chr	start	end	name	score	strand	gc	gc_bin	chrom	feature_id	feature_bin	feature_type_top	feature_types	gene_name	gene_id	transcript_ids	gene_type_top	transcript_type_top	gene_types	transcript_types	input_sum	clip_sum	enrichment_n	enrichment_l2or_min	enrichment_l2or_mean	enrichment_l2or_max	p_max	p_min	q_max	q_min
chr14	73588825	73588925	5919651	0	-	0.37	(0.35,0.378]	chr14	562273	305	INTRON	INTRON	ENSG00000258603	ENSG00000258603.5	ENST00000664243.1	lncRNA	lncRNA	lncRNA	lncRNA	1	701	2	7.08588	7.8598099999999995	8.63374	7.15628e-12	1e-12	1.76317e-7	5.45623e-8
chr2	169595714	169595813	906584	0	+	0.262626	[0,0.28]	chr2	100021	26	INTRON	INTRON	PPIG	ENSG00000138398.17	ENST00000678088.1:ENST00000677392.1:ENST00000433207.6:ENST00000679324.1:ENST00000414307.6:ENST00000676508.1:ENST00000260970.8:ENST00000678695.1:ENST00000409714.7:ENST00000530152.5:ENST00000677750.1:ENST00000676557.1:ENST00000678721.1:ENST00000462903.6:ENST00000676756.1:ENST00000679107.1:ENST00000678499.1:ENST00000678638.1:ENST00000448752.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	276	2	7.36622	7.47487	7.58352	1.59269e-6	1.73806e-8	8.36186e-4	4.7949e-5
chr10	24889233	24889333	4582365	0	-	0.57	(0.515,0.57]	chr10	422255	168	INTRON	INTRON	PRTFDC1	ENSG00000099256.19	ENST00000320152.11:ENST00000376378.5	protein_coding	protein_coding	protein_coding	protein_coding	0	191	2	7.02521	7.167630000000001	7.31005	1.92296e-8	2.38941e-10	4.48172e-5	2.60743e-6
chr3	9405444	9405544	1358962	0	+	0.31	(0.28,0.32]	chr3	142655	71	INTRON	INTRON	SETD5	ENSG00000168137.20	ENST00000402198.7:ENST00000431285.5:ENST00000683012.1:ENST00000463180.5:ENST00000478475.5:ENST00000415650.5:ENST00000682536.1:ENST00000663774.1:ENST00000665872.1:ENST00000666307.1:ENST00000693430.1:ENST00000691925.1:ENST00000684606.1:ENST00000691175.1:ENST00000688835.1:ENST00000683262.1:ENST00000443339.5:ENST00000406341.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	193	2	6.9241	7.011085	7.09807	3.72987e-6	8.54681e-8	0.00138787	1.25522e-4
chr21	36358678	36358775	7404088	0	+	0.536082	(0.515,0.57]	chr21	754334	16	INTRON	INTRON	MORC3	ENSG00000159256.13	ENST00000400485.6:ENST00000487909.5:ENST00000485299.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	172	2	6.72201	7.001835	7.28166	1.65475e-7	3.05912e-10	1.98188e-4	3.17503e-6
chr4	82666458	82666558	2178010	0	-	0.48	(0.476,0.515]	chr4	214214	50	INTRON	INTRON	SCD5	ENSG00000145284.12	ENST00000319540.9:ENST00000273908.4	protein_coding	protein_coding	protein_coding	protein_coding	0	164	2	6.67777	6.862489999999999	7.04721	1.61185e-7	9.62235e-8	1.84933e-4	1.38228e-4
chr22	19508891	19508991	7477138	0	+	0.22	[0,0.28]	chr22	762457	2	SS5_PROX	SS5_PROX:INTRON	CDC45	ENSG00000093009.11	ENST00000407835.6:ENST00000437685.6:ENST00000438587.6:ENST00000672837.1:ENST00000263201.7:ENST00000404724.7:ENST00000471470.1:ENST00000671972.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	173	2	6.50944	6.77388	7.03832	9.67809e-6	7.90414e-6	0.00225238	0.00212728
chr5	54021309	54021409	2618017	0	-	0.25	[0,0.28]	chr5	248835	1093	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	166	2	6.63014	6.7396650000000005	6.84919	1.90225e-5	5.1103e-6	0.00354138	0.00154619
chr7	1451487	1451587	3462200	0	-	0.56	(0.515,0.57]	chr7	323713	8	INTRON	INTRON	MICALL2	ENSG00000164877.19	ENST00000472100.5:ENST00000297508.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	140	2	6.72201	6.725820000000001	6.72963	1.65475e-7	2.81483e-8	1.98188e-4	6.45913e-5
chr9	131135191	131135284	4215721	0	+	0.408602	(0.408,0.44]	chr9	386540	3	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NUP214	ENSG00000126883.19	ENST00000695497.1:ENST00000695498.1:ENST00000695496.1:ENST00000695495.1:ENST00000695494.1:ENST00000695493.1:ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000525561.2:ENST00000651022.1:ENST00000695499.1:ENST00000530843.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	315	2	5.60251	6.68938	7.77625	6.51243e-9	2.58992e-11	2.06088e-5	5.5296e-7
chr7	140461637	140461737	3661448	0	-	0.43	(0.408,0.44]	chr7	339916	10	INTRON	INTRON	MKRN1	ENSG00000133606.11	ENST00000255977.7:ENST00000475010.5:ENST00000495305.5:ENST00000474576.5:ENST00000480552.5:ENST00000496169.5:ENST00000443720.6:ENST00000471104.5:ENST00000467513.5:ENST00000494939.1:ENST00000498535.1:ENST00000473444.1:ENST00000475180.5:ENST00000481705.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	141	2	6.42268	6.649495	6.87631	5.98696e-6	3.53255e-8	0.00183779	7.47714e-5
chr9	131445315	131445412	4217488	0	+	0.505155	(0.476,0.515]	chr9	386752	6	INTRON	INTRON	PRRC2B	ENSG00000288701.1	ENST00000684596.1:ENST00000683519.1:ENST00000682501.1	protein_coding	protein_coding	protein_coding	protein_coding	0	142	2	6.32804	6.632845	6.93765	1.63105e-6	1.96667e-7	7.7386e-4	2.22283e-4
chr7	152318730	152318830	3680116	0	-	0.31	(0.28,0.32]	chr7	341641	30	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000684262.1:ENST00000682301.1:ENST00000452749.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	152	2	6.13317	6.60835	7.08353	1.54938e-4	9.403e-8	0.0113252	1.33068e-4
chr15	66353455	66353554	6210151	0	-	0.575758	(0.57,1]	chr15	592670	1	INTRON	INTRON	TIPIN	ENSG00000075131.10	ENST00000261881.9:ENST00000566524.5:ENST00000562124.5:ENST00000568216.5:ENST00000570251.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	104	2	6.4251	6.580909999999999	6.73672	7.70773e-9	1.03575e-9	2.98029e-5	5.17777e-6
chr1	88688025	88688125	155806	0	+	0.42	(0.408,0.44]	chr1	17045	30	INTRON	INTRON	PKN2	ENSG00000065243.20	ENST00000316005.11:ENST00000370521.8:ENST00000370513.9	protein_coding	protein_coding	protein_coding	protein_coding	0	133	2	6.43495	6.564665	6.69438	1.25828e-6	7.5397499999999995e-07	7.25792e-4	4.87215e-4
chr15	68092086	68092186	6056334	0	+	0.25	[0,0.28]	chr15	576567	38	INTRON	INTRON	PIAS1	ENSG00000033800.14	ENST00000564915.5:ENST00000249636.11:ENST00000562190.1:ENST00000545237.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	140	2	6.28586	6.495604999999999	6.70535	2.0925e-4	3.39918e-6	0.0131276	0.00120209
chr4	1719528	1719628	2095278	0	-	0.31	(0.28,0.32]	chr4	207254	3	SS3_PROX	SS3_PROX:INTRON	TMEM129	ENSG00000168936.11	ENST00000303277.6:ENST00000382936.8:ENST00000536901.1:ENST00000480360.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	135	2	6.35848	6.489365	6.62025	1.70645e-5	7.51258e-6	0.00330681	0.00195296
chr12	62369908	62370007	5150663	0	+	0.414141	(0.408,0.44]	chr12	487365	141	INTRON	INTRON	USP15	ENSG00000135655.16	ENST00000353364.7:ENST00000280377.10:ENST00000547317.5:ENST00000549268.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	125	2	6.38492	6.48011	6.5753	2.52667e-6	1.04342e-6	0.0011145	5.86115e-4
chr12	110303325	110303425	5226323	0	+	0.45	(0.44,0.476]	chr12	495250	62	INTRON	INTRON	ATP2A2	ENSG00000174437.18	ENST00000308664.10:ENST00000539276.7:ENST00000377685.9:ENST00000548169.2:ENST00000550248.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	125	2	6.23273	6.47791	6.72309	1.47185e-5	1.07471e-7	0.00307878	1.44986e-4
chr16	68086316	68086416	6370229	0	+	0.33	(0.32,0.35]	chr16	612177	4	SS5_PROX	SS5_PROX:INTRON	ENSG00000261864:NFATC3	ENSG00000261864.1:ENSG00000072736.19	ENST00000548144.1:ENST00000563319.5:ENST00000569766.5:ENST00000553077.5:ENST00000566301.5:ENST00000549350.5:ENST00000566893.5:ENST00000575270.5:ENST00000561714.5:ENST00000346183.8:ENST00000568466.6:ENST00000539828.6:ENST00000562171.1:ENST00000349223.9:ENST00000329524.8:ENST00000379165.8:ENST00000562926.5:ENST00000570212.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA:processed_transcript	0	127	2	6.42824	6.446415	6.46459	2.1132e-5	2.06686e-6	0.00376117	8.86423e-4
chr11	103090915	103091015	5026567	0	-	0.29	(0.28,0.32]	chr11	473960	12	INTRON	INTRON	DCUN1D5	ENSG00000137692.12	ENST00000260247.10:ENST00000531571.5:ENST00000531543.1:ENST00000529281.5:ENST00000529294.5:ENST00000527576.5:ENST00000527779.1:ENST00000525420.1:ENST00000529076.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	130	2	6.42918	6.445345	6.46151	3.61671e-5	5.07227e-6	0.00508987	0.00153943
chr2	96863041	96863136	1181884	0	-	0.463158	(0.44,0.476]	chr2	126653	13	EXON_MRNA	EXON_MRNA:INTRON	SEMA4C	ENSG00000168758.11	ENST00000305476.10:ENST00000482925.5:ENST00000467747.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	121	2	6.12323	6.42316	6.72309	2.60698e-5	1.07471e-7	0.0042231	1.44986e-4
chr19	34398821	34398917	7052841	0	+	0.479167	(0.476,0.515]	chr19	703425	17	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	GPI	ENSG00000105220.17	ENST00000415930.8:ENST00000588991.7:ENST00000356487.11:ENST00000647446.1:ENST00000586425.2:ENST00000643067.1:ENST00000586392.1:ENST00000586077.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	119	2	6.39059	6.422435	6.45428	5.37054e-6	7.25621e-7	0.00172277	4.76348e-4
chr13	106543898	106543995	5648688	0	-	0.257732	[0,0.28]	chr13	538141	24	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ARGLU1	ENSG00000134884.15	ENST00000400198.8:ENST00000472226.2:ENST00000375926.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	404	2	5.06829	6.411335	7.75438	2.12513e-7	1.1027e-8	2.37829e-4	3.58435e-5
chr14	69434046	69434146	5775415	0	+	0.41	(0.408,0.44]	chr14	547257	47	INTRON	INTRON	SLC39A9	ENSG00000029364.12	ENST00000556125.5:ENST00000555245.5:ENST00000538956.5:ENST00000556605.5:ENST00000336643.10:ENST00000031146.8:ENST00000628474.2:ENST00000555840.5:ENST00000557046.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	118	2	6.3995	6.404825	6.41015	6.80425e-6	8.86228e-7	0.00195911	5.3595e-4
chr18	188672	188771	6855131	0	+	0.474747	(0.44,0.476]	chr18	679521	80	INTRON	INTRON	USP14	ENSG00000101557.15	ENST00000582707.5:ENST00000400266.7:ENST00000261601.8:ENST00000578942.5:ENST00000383589.6:ENST00000583119.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	119	2	6.03529	6.3891849999999994	6.74308	4.06961e-5	9.33114e-8	0.00539487	1.32816e-4
chr13	111182142	111182242	5544979	0	+	0.61	(0.57,1]	chr13	529753	227	INTRON	INTRON	ARHGEF7	ENSG00000102606.19	ENST00000317133.9:ENST00000375739.6:ENST00000375741.6:ENST00000646102.2:ENST00000449979.5:ENST00000491775.5:ENST00000469877.5:ENST00000466143.5:ENST00000218789.9:ENST00000375736.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	96	2	5.82044	6.38544	6.95044	1.81133e-6	4.82276e-11	9.08125e-4	7.89424e-7
chr5	79619893	79619993	2398803	0	+	0.21	[0,0.28]	chr5	231695	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TENT2	ENSG00000164329.14	ENST00000505571.5:ENST00000423041.6:ENST00000504233.5:ENST00000453514.6:ENST00000428308.6:ENST00000515807.5:ENST00000296783.7:ENST00000514095.5:ENST00000503620.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	129	2	6.21525	6.38303	6.55081	2.75841e-4	7.79298e-6	0.0152235	0.00200253
chr3	160413066	160413160	1544738	0	+	0.308511	(0.28,0.32]	chr3	160703	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SMC4	ENSG00000113810.16	ENST00000357388.8:ENST00000469762.5:ENST00000468653.5:ENST00000469858.5:ENST00000489573.5:ENST00000462787.5:ENST00000344722.5:ENST00000497984.5:ENST00000487747.5:ENST00000465563.5:ENST00000494612.1:ENST00000467263.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	124	2	6.25919	6.377885	6.49658	9.00783e-5	3.46319e-6	0.00844245	0.00120947
chr13	95992172	95992272	5641833	0	-	0.29	(0.28,0.32]	chr13	537388	3	INTRON	INTRON	UGGT2	ENSG00000102595.21	ENST00000376747.8:ENST00000465196.5:ENST00000376714.7:ENST00000461329.5:ENST00000397618.7:ENST00000467305.1:ENST00000376712.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	125	2	6.15102	6.366595	6.58217	2.27393e-5	2.04903e-5	0.00372337	0.00367732
chr3	197950623	197950691	1598728	0	+	0.411765	(0.408,0.44]	chr3	165694	2	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPL35A	ENSG00000182899.17	ENST00000647248.2:ENST00000448864.6:ENST00000485439.5:ENST00000642387.1:ENST00000642148.1:ENST00000329092.12:ENST00000496582.5:ENST00000429437.5:ENST00000442341.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	121	2	5.87047	6.3462	6.82193	2.24671e-5	5.82898e-7	0.0036973	4.48872e-4
chr3	14470706	14470806	1370092	0	+	0.53	(0.515,0.57]	chr3	144371	21	INTRON	INTRON	SLC6A6	ENSG00000131389.18	ENST00000613060.4:ENST00000618278.4:ENST00000610642.4:ENST00000649500.1:ENST00000622186.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	108	2	6.17221	6.34035	6.50849	1.49517e-6	6.86908e-7	7.32023e-4	4.95106e-4
chr3	185768990	185769090	1885788	0	-	0.54	(0.515,0.57]	chr3	188573	703	INTRON	INTRON	IGF2BP2	ENSG00000073792.16	ENST00000382199.7:ENST00000346192.7:ENST00000457616.6:ENST00000421047.3:ENST00000461957.5:ENST00000493302.5:ENST00000466476.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	105	2	6.23278	6.310675	6.38857	1.47549e-6	1.00111e-6	0.00079897500000000005	5.70307e-4
chr1	100364122	100364222	172741	0	+	0.21	[0,0.28]	chr1	18804	5	INTRON	INTRON	CDC14A	ENSG00000079335.20	ENST00000646665.1:ENST00000644844.1:ENST00000635056.2:ENST00000647005.1:ENST00000647203.1:ENST00000644676.1:ENST00000361544.11:ENST00000370124.8:ENST00000336454.5:ENST00000646583.1:ENST00000644813.1:ENST00000455467.6:ENST00000646563.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	122	2	6.16618	6.305625	6.44507	3.33131e-4	1.34946e-5	0.016912	0.00274251
chr6	28099606	28099706	3073710	0	-	0.42	(0.408,0.44]	chr6	285702	186	INTRON	INTRON	ZSCAN16-AS1	ENSG00000269293.4	ENST00000660873.1	lncRNA	lncRNA	lncRNA	lncRNA	0	112	2	5.90216	6.292495000000001	6.68283	8.66425e-5	1.40986e-7	0.00836204	1.69668e-4
chr17	42506624	42506722	6611790	0	+	0.387755	(0.378,0.408]	chr17	644172	34	INTRON	INTRON	ATP6V0A1	ENSG00000033627.17	ENST00000393829.6:ENST00000343619.9:ENST00000537728.5:ENST00000264649.10:ENST00000585525.5:ENST00000544137.5:ENST00000587510.5:ENST00000586201.5:ENST00000588138.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	110	2	6.236	6.291245	6.34649	2.20111e-5	1.6514e-6	0.00381911	7.76759e-4
chr19	17082470	17082570	7028013	0	+	0.58	(0.57,1]	chr19	699580	62	INTRON	INTRON	MYO9B	ENSG00000099331.14	ENST00000682292.1:ENST00000595618.5:ENST00000594824.5	protein_coding	protein_coding	protein_coding	protein_coding	2	272	2	6.24348	6.291065	6.33865	1e-12	1e-12	5.45623e-8	4.97648e-8
chr12	76829588	76829687	5174522	0	+	0.242424	[0,0.28]	chr12	490143	7	INTRON	INTRON	ZDHHC17	ENSG00000186908.15	ENST00000426126.7	protein_coding	protein_coding	protein_coding	protein_coding	0	119	2	6.16618	6.27194	6.3777	3.33131e-4	1.8994e-5	0.016912	0.00333235
chr20	62936395	62936495	7362555	0	-	0.59	(0.57,1]	chr20	751216	72	INTRON	INTRON	DIDO1	ENSG00000101191.17	ENST00000266070.8:ENST00000370371.8	protein_coding	protein_coding	protein_coding	protein_coding	0	82	2	6.22123	6.2533	6.28537	5.36563e-8	4.52125e-8	9.25393e-5	8.74098e-5
chr15	55247256	55247355	6180476	0	-	0.484848	(0.476,0.515]	chr15	589150	84	INTRON	INTRON	RAB27A	ENSG00000069974.16	ENST00000336787.6:ENST00000396307.6:ENST00000564609.5:ENST00000569493.5:ENST00000566877.5:ENST00000567380.5:ENST00000565972.5:ENST00000563262.5:ENST00000568803.1:ENST00000567639.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	107	2	5.94937	6.24862	6.54787	5.50774e-5	3.90664e-7	0.0065165	3.24054e-4
chr1	167937652	167937752	248498	0	+	0.34	(0.32,0.35]	chr1	29535	4	SS5_PROX	SS5_PROX:INTRON	DCAF6	ENSG00000143164.16	ENST00000450548.5:ENST00000470919.5:ENST00000432587.6:ENST00000367843.7:ENST00000470721.5:ENST00000367840.4:ENST00000312263.10:ENST00000455334.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	109	2	6.13758	6.228535	6.31949	8.35107e-5	4.85347e-6	0.00815123	0.0015018
chr22	46678618	46678715	7535166	0	+	0.309278	(0.28,0.32]	chr22	770527	15	UTR3	UTR3:EXON_MRNA	GRAMD4	ENSG00000075240.17	ENST00000406902.6:ENST00000361034.7:ENST00000408031.1	protein_coding	protein_coding	protein_coding	protein_coding	0	113	2	5.97315	6.2173300000000005	6.46151	5.56637e-5	3.61671e-5	0.0061014	0.00508987
chr10	96134321	96134408	4502238	0	+	0.505747	(0.476,0.515]	chr10	414475	3	INTRON	INTRON	ZNF518A	ENSG00000177853.15	ENST00000614149.2:ENST00000488700.5:ENST00000624776.4:ENST00000539666.5:ENST00000563195.1:ENST00000316045.10	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	103	2	6.16036	6.21349	6.26662	1.06599e-5	4.57104e-6	0.00256951	0.00144313
chr17	17225888	17225984	6735954	0	-	0.302083	(0.28,0.32]	chr17	660909	15	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	FLCN	ENSG00000154803.13	ENST00000285071.9:ENST00000389169.9:ENST00000417064.1:ENST00000389171.4:ENST00000389168.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	110	2	6.05192	6.2052	6.35848	2.17456e-4	7.51258e-6	0.0135077	0.00195296
chr2	231459651	231459751	1341771	0	-	0.49	(0.476,0.515]	chr2	140516	1	SS5_PROX	SS5_PROX:INTRON	NCL	ENSG00000115053.17	ENST00000322723.9:ENST00000676514.1:ENST00000677703.1:ENST00000678828.1:ENST00000676798.1:ENST00000678246.1:ENST00000679348.1:ENST00000417652.6:ENST00000453992.6:ENST00000678729.1:ENST00000678849.1:ENST00000678405.1:ENST00000676913.1:ENST00000678131.1:ENST00000678364.1:ENST00000676690.1:ENST00000461347.5:ENST00000356936.6:ENST00000454824.6:ENST00000436894.2:ENST00000677786.1:ENST00000494618.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	117	2	5.39709	6.175455	6.95382	2.55871e-4	1.77162e-7	0.0142249	2.0715e-4
chr12	56350017	56350096	5334765	0	-	0.379747	(0.378,0.408]	chr12	509788	3	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	STAT2	ENSG00000170581.14	ENST00000314128.9:ENST00000651301.1:ENST00000651915.1:ENST00000651934.1:ENST00000652091.1:ENST00000651805.1:ENST00000651078.1:ENST00000650805.1:ENST00000652741.1:ENST00000652624.1:ENST00000556140.6:ENST00000652398.1:ENST00000651967.1:ENST00000557235.5:ENST00000418572.7:ENST00000555519.5:ENST00000557252.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	101	2	6.01248	6.166415000000001	6.32035	6.62964e-5	1.94432e-6	0.00717086	8.47188e-4
chr10	27134524	27134622	4586085	0	-	0.377551	(0.35,0.378]	chr10	422747	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	YME1L1	ENSG00000136758.20	ENST00000376016.8:ENST00000613434.4:ENST00000326799.7:ENST00000491542.6:ENST00000463270.1:ENST00000427324.5:ENST00000396296.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	104	2	5.83362	6.163945	6.49427	2.04087e-4	9.79905e-7	0.0129859	5.60831e-4
chr18	779408	779508	6940376	0	-	0.16	[0,0.28]	chr18	686519	39	INTRON	INTRON	YES1	ENSG00000176105.14	ENST00000584307.5:ENST00000314574.5:ENST00000577611.1:ENST00000581960.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	111	2	6.01352	6.161085	6.30865	1.91171e-4	1.07908e-4	0.0126567	0.00878438
chr1	224009520	224009619	321096	0	+	0.282828	(0.28,0.32]	chr1	36990	9	EXON_MRNA	EXON_MRNA:EXON_LNCRNA	SEPTIN7P13	ENSG00000185495.10	ENST00000449219.2:ENST00000572124.2:ENST00000540997.2	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript	0	107	2	5.90542	6.15571	6.406	3.92169e-4	5.77445e-6	0.0184748	0.00167887
chr3	17733943	17734043	1630347	0	-	0.38	(0.378,0.408]	chr3	168275	317	INTRON	INTRON	TBC1D5	ENSG00000131374.15	ENST00000253692.11:ENST00000696125.1:ENST00000414318.2:ENST00000429383.8:ENST00000415814.6:ENST00000452492.6:ENST00000412981.5:ENST00000428355.5:ENST00000425944.5:ENST00000430169.5:ENST00000445294.5:ENST00000414349.5:ENST00000443499.6:ENST00000444756.5:ENST00000497531.5:ENST00000443386.5:ENST00000446863.5:ENST00000444471.5:ENST00000481396.5:ENST00000423331.6:ENST00000485432.1:ENST00000471679.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	100	2	6.15268	6.15443	6.15618	3.2917e-5	5.3788e-6	0.00483774	0.00160484
chr7	73510435	73510535	3554981	0	-	0.39	(0.378,0.408]	chr7	330808	3	SS5_PROX	SS5_PROX:INTRON	BAZ1B	ENSG00000009954.11	ENST00000339594.9:ENST00000404251.1	protein_coding	protein_coding	protein_coding	protein_coding	0	100	2	5.95074	6.1486149999999995	6.34649	8.87003e-5	1.6514e-6	0.00842626	7.76759e-4
chr13	102854216	102854287	5533404	0	+	0.464789	(0.44,0.476]	chr13	528946	2	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ERCC5	ENSG00000134899.24	ENST00000651002.1:ENST00000535557.5:ENST00000652613.1:ENST00000683246.1:ENST00000682632.1:ENST00000652225.2:ENST00000682869.1:ENST00000684184.1:ENST00000651470.1:ENST00000651055.1:ENST00000651281.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	102	2	5.69608	6.1465250000000005	6.59697	2.01872e-4	2.57871e-7	0.0129814	2.48783e-4
chr8	102859785	102859883	4013196	0	-	0.438776	(0.408,0.44]	chr8	367346	2	INTRON	INTRON	AZIN1	ENSG00000155096.15	ENST00000681985.1:ENST00000684566.1:ENST00000682725.1:ENST00000337198.10:ENST00000684459.1:ENST00000683787.1:ENST00000682014.1:ENST00000682969.1:ENST00000684721.1:ENST00000683965.1:ENST00000347770.8:ENST00000520402.5:ENST00000518353.5:ENST00000517581.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	98	2	6.05834	6.140915	6.22349	4.06336e-5	2.88416e-6	0.00539487	0.0010903
chr1	198183874	198183974	287923	0	+	0.28	[0,0.28]	chr1	33146	262	INTRON	INTRON	NEK7	ENSG00000151414.15	ENST00000442588.5:ENST00000367385.9:ENST00000538004.5:ENST00000367383.5	protein_coding	protein_coding	protein_coding	protein_coding	0	110	2	5.83049	6.13778	6.44507	0.00112548	1.34946e-5	0.0306963	0.00274251
chr7	157206497	157206597	3454628	0	+	0.45	(0.44,0.476]	chr7	322965	43	INTRON	INTRON	UBE3C	ENSG00000009335.18	ENST00000348165.10	protein_coding	protein_coding	protein_coding	protein_coding	0	99	2	5.80647	6.1326149999999995	6.45876	1.22335e-4	6.51301e-7	0.00993581	4.42976e-4
chr11	67269173	67269271	4813897	0	+	0.581633	(0.57,1]	chr11	448237	20	INTRON	INTRON	GRK2	ENSG00000173020.11	ENST00000308595.10:ENST00000526285.1	protein_coding	protein_coding	protein_coding	protein_coding	0	76	2	5.94005	6.129085	6.31812	4.29946e-7	4.10026e-8	3.43012e-4	7.91408e-5
chr12	68630758	68630858	5161405	0	+	0.58	(0.57,1]	chr12	488585	55	INTRON	INTRON	RAP1B	ENSG00000127314.18	ENST00000460800.5:ENST00000393436.9:ENST00000250559.14:ENST00000425247.6:ENST00000501412.2:ENST00000450214.6:ENST00000463493.5:ENST00000537460.5:ENST00000341355.9:ENST00000538283.5:ENST00000541167.5:ENST00000422358.6:ENST00000489473.6:ENST00000545270.5:ENST00000538980.5:ENST00000543393.5:ENST00000542018.5:ENST00000540209.5:ENST00000378985.7:ENST00000453560.6:ENST00000534899.5:ENST00000542145.5:ENST00000539091.5:ENST00000535492.5:ENST00000540781.5:ENST00000485252.6:ENST00000538877.5:ENST00000541386.5:ENST00000543697.5:ENST00000545720.6:ENST00000541216.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	75	2	5.99261	6.1249400000000005	6.25727	5.25293e-7	3.33449e-8	4.21981e-4	7.18174e-5
chr6	90555999	90556099	3162481	0	-	0.39	(0.378,0.408]	chr6	294956	1	SS5_PROX	SS5_PROX:INTRON	MAP3K7	ENSG00000135341.18	ENST00000369332.7:ENST00000369327.7:ENST00000369325.7:ENST00000369329.8	protein_coding	protein_coding	protein_coding	protein_coding	0	98	2	5.88624	6.116365	6.34649	1.19481e-4	1.6514e-6	0.00988798	7.76759e-4
chr2	128123940	128124037	862810	0	+	0.494845	(0.476,0.515]	chr2	96723	3	INTRON	INTRON	UGGT1	ENSG00000136731.13	ENST00000259253.11:ENST00000438277.5:ENST00000376723.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	96	2	6.09984	6.1154150000000005	6.13099	2.19436e-5	6.54592e-6	0.00381314	0.00180994
chr16	10452126	10452226	6286946	0	+	0.46	(0.44,0.476]	chr16	602005	113	INTRON	INTRON	ATF7IP2	ENSG00000166669.14	ENST00000396559.5:ENST00000396560.6:ENST00000543967.5:ENST00000562102.6:ENST00000535850.5:ENST00000568027.5:ENST00000324570.9:ENST00000356427.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	99	2	5.69608	6.1128	6.52952	2.01872e-4	4.07049e-7	0.0129814	3.32589e-4
chr9	37191349	37191449	4118370	0	+	0.21	[0,0.28]	chr9	375389	44	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000461038.5:ENST00000488607.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	107	2	5.98362	6.111395	6.23917	2.51349e-4	1.23405e-4	0.0146599	0.00949832
chr7	139383238	139383337	3437829	0	+	0.474747	(0.44,0.476]	chr7	320340	67	INTRON	INTRON	LUC7L2:FMC1-LUC7L2	ENSG00000146963.18:ENSG00000269955.2	ENST00000541170.7:ENST00000541515.3:ENST00000608368.5:ENST00000619796.4:ENST00000354926.9:ENST00000456182.5:ENST00000263545.7:ENST00000463912.5:ENST00000498518.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	96	2	6.04113	6.110075	6.17902	1.95288e-5	8.64562e-6	0.00358497	0.00211124
chr4	1890870	1890970	1910765	0	+	0.55	(0.515,0.57]	chr4	191711	28	INTRON	INTRON	NSD2	ENSG00000109685.19	ENST00000508803.6:ENST00000507820.5:ENST00000508355.5:ENST00000514045.5:ENST00000515806.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	91	2	6.00864	6.105295	6.20195	4.60806e-6	4.25301e-6	0.00157843	0.00138219
chr1	23519015	23519072	400430	0	-	0.631579	(0.57,1]	chr1	48060	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	E2F2	ENSG00000007968.7	ENST00000361729.3:ENST00000487237.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	74	2	5.95145	6.10436	6.25727	7.11114e-7	3.33449e-8	5.07841e-4	7.18174e-5
chr2	126668134	126668233	862129	0	+	0.323232	(0.32,0.35]	chr2	96613	95	INTRON	INTRON	GYPC	ENSG00000136732.16	ENST00000459787.1:ENST00000259254.9:ENST00000409836.3:ENST00000356887.12	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	101	2	5.87628	6.09522	6.31416	5.28936e-5	3.67371e-5	0.00592337	0.00515117
chr7	12336887	12336987	3484734	0	-	0.36	(0.35,0.378]	chr7	325816	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	VWDE	ENSG00000146530.15	ENST00000275358.8:ENST00000452576.6:ENST00000521169.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	206	2	4.84634	6.09495	7.34356	5.00929e-7	5.91514e-8	3.78502e-4	1.00155e-4
chr10	68601134	68601234	4441295	0	+	0.33	(0.32,0.35]	chr10	409529	1	SS5_PROX	SS5_PROX:INTRON	TET1	ENSG00000138336.9	ENST00000373644.5	protein_coding	protein_coding	protein_coding	protein_coding	0	99	2	6.05475	6.092090000000001	6.12943	1.2096e-4	1.4081e-5	0.00992813	0.00279379
chrX	11241058	11241158	7759760	0	-	0.4	(0.378,0.408]	chrX	793496	437	INTRON	INTRON	ARHGAP6	ENSG00000047648.23	ENST00000657361.1:ENST00000380736.5:ENST00000337414.9:ENST00000495242.5:ENST00000303025.10:ENST00000489330.6:ENST00000380718.1:ENST00000380717.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	101	2	5.6635	6.0904	6.5173	7.77533e-5	4.93978e-6	0.00735438	0.00163836
chr3	136259535	136259635	1511253	0	+	0.29	(0.28,0.32]	chr3	158085	3	SS5_PROX	SS5_PROX:INTRON	PCCB	ENSG00000114054.14	ENST00000251654.9:ENST00000490504.5:ENST00000483687.5:ENST00000468777.5:ENST00000462637.5:ENST00000466072.5:ENST00000484181.5:ENST00000482086.5:ENST00000471595.5:ENST00000469217.5:ENST00000465423.5:ENST00000478469.5:ENST00000474833.5:ENST00000462542.5:ENST00000494742.5:ENST00000459873.1:ENST00000475214.5:ENST00000465176.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	109	2	5.47779	6.089345	6.7009	0.00187048	1.04437e-6	0.0390476	5.86115e-4
chr22	20022994	20023094	7477762	0	+	0.48	(0.476,0.515]	chr22	762628	13	INTRON	INTRON	TANGO2	ENSG00000183597.16	ENST00000401886.5:ENST00000471707.5:ENST00000432198.5:ENST00000475446.5:ENST00000420290.6:ENST00000432883.5:ENST00000434570.6:ENST00000447208.6:ENST00000456048.5:ENST00000411907.5:ENST00000398042.6:ENST00000399807.7:ENST00000450664.5:ENST00000450019.5:ENST00000327374.9:ENST00000479679.5:ENST00000430807.5:ENST00000401833.5:ENST00000434168.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	95	2	5.93639	6.088445	6.2405	1.66809e-5	1.22785e-5	0.00308061	0.00278588
chr18	13024682	13024782	6876912	0	+	0.49	(0.476,0.515]	chr18	681391	51	INTRON	INTRON	CEP192	ENSG00000101639.19	ENST00000325971.12:ENST00000506447.5:ENST00000589596.5:ENST00000513432.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	93	2	6.04304	6.071440000000001	6.09984	3.44951e-5	6.54592e-6	0.00495154	0.00180994
chr15	50570655	50570752	6172078	0	-	0.412371	(0.408,0.44]	chr15	588197	1	INTRON	INTRON	TRPM7	ENSG00000092439.16	ENST00000561267.5:ENST00000646667.1:ENST00000560955.5:ENST00000561443.5:ENST00000560516.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	94	2	5.94142	6.07034	6.19926	1.98542e-5	1.51568e-5	0.00360253	0.00293131
chr7	148857904	148858004	3670499	0	-	0.16	[0,0.28]	chr7	340628	102	INTRON	INTRON	EZH2	ENSG00000106462.12	ENST00000683292.1:ENST00000320356.7:ENST00000492143.5:ENST00000478654.5:ENST00000350995.6:ENST00000460911.5:ENST00000683744.1:ENST00000682317.1:ENST00000682263.1:ENST00000684300.1:ENST00000476773.5:ENST00000483967.5:ENST00000498186.5:ENST00000483012.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	104	2	5.83049	6.06876	6.30703	0.00112548	2.7002e-5	0.0306963	0.00409374
chr1	236550801	236550901	665179	0	-	0.36	(0.35,0.378]	chr1	78750	19	UTR3	UTR3:EXON_MRNA	HEATR1	ENSG00000119285.11	ENST00000366582.8:ENST00000366581.6	protein_coding	protein_coding	protein_coding	protein_coding	1	205	2	4.7234	6.06818	7.41296	1.14635e-6	3.7917e-8	6.1522e-4	7.51658e-5
chr7	152405644	152405744	3680990	0	-	0.39	(0.378,0.408]	chr7	341660	466	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000682301.1:ENST00000452749.2:ENST00000680867.1:ENST00000683800.1:ENST00000684278.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	94	2	6.01248	6.067605	6.12273	6.62964e-5	6.41562e-6	0.00717086	0.00178496
chrX	47144102	47144199	7814153	0	-	0.391753	(0.378,0.408]	chrX	796412	15	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	NDUFB11	ENSG00000147123.12	ENST00000687244.1:ENST00000276062.9:ENST00000692649.1:ENST00000377811.4:ENST00000690053.1:ENST00000690204.1:ENST00000685599.1:ENST00000688286.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	98	2	5.70451	6.067	6.42949	6.32265e-5	7.97499e-6	0.00658818	0.00213244
chr10	3121729	3121828	4382090	0	+	0.222222	[0,0.28]	chr10	404146	13	INTRON	INTRON	PFKP	ENSG00000067057.18	ENST00000381125.9:ENST00000381075.7:ENST00000678206.1:ENST00000678089.1:ENST00000676796.1:ENST00000415005.6:ENST00000413079.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	103	2	5.95127	6.066115	6.18096	7.37141e-4	4.96998e-5	0.02495	0.00577648
chr19	55657974	55658070	7101543	0	+	0.375	(0.35,0.378]	chr19	712494	25	INTRON	INTRON	U2AF2	ENSG00000063244.13	ENST00000450554.6:ENST00000308924.9:ENST00000588850.5:ENST00000587196.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	96	2	5.93999	6.065275	6.19056	3.96164e-5	2.49725e-5	0.00537148	0.00392542
chr22	38389850	38389950	7587756	0	-	0.52	(0.515,0.57]	chr22	776703	11	INTRON	INTRON	TPTEP2	ENSG00000244627.5	ENST00000428294.5:ENST00000407491.6:ENST00000443042.5:ENST00000457665.5:ENST00000381645.7:ENST00000443658.5:ENST00000455209.5:ENST00000454577.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	88	2	6.02019	6.064590000000001	6.10899	1.31473e-5	2.25436e-6	0.00286967	9.42151e-4
chr15	40212748	40212831	6001786	0	+	0.26506	[0,0.28]	chr15	570681	1	SS5_PROX	SS5_PROX:INTRON	BUB1B	ENSG00000156970.13	ENST00000412359.7:ENST00000287598.11	protein_coding	protein_coding	protein_coding	protein_coding	0	103	2	5.86165	6.059785	6.25792	0.00101071	3.43383e-5	0.0291154	0.0046762
chr1	162579803	162579903	238503	0	+	0.3	(0.28,0.32]	chr1	28715	2	SS5_PROX	SS5_PROX:INTRON	UAP1	ENSG00000117143.14	ENST00000367925.6:ENST00000367926.9	protein_coding	protein_coding	protein_coding	protein_coding	0	99	2	5.99509	6.05897	6.12285	2.74247e-4	2.62905e-5	0.0151711	0.00402941
chr18	12824910	12825010	6950141	0	-	0.43	(0.408,0.44]	chr18	687562	31	INTRON	INTRON	PTPN2	ENSG00000175354.20	ENST00000327283.7:ENST00000591115.5:ENST00000353319.8:ENST00000587703.5:ENST00000309660.10:ENST00000591497.5:ENST00000646492.1:ENST00000645191.1:ENST00000645816.1:ENST00000591305.5:ENST00000592776.1:ENST00000589216.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	92	2	6.02843	6.05103	6.07363	4.71156e-5	7.09547e-6	0.00593131	0.00188852
chr10	18651491	18651587	4570716	0	-	0.4375	(0.408,0.44]	chr10	421535	4	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7:ENST00000606425.2:ENST00000456217.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	92	2	5.90216	6.048450000000001	6.19474	8.66425e-5	3.43916e-6	0.00836204	0.00120545
chr15	75932484	75932584	6065954	0	+	0.37	(0.35,0.378]	chr15	577663	4	SS3_PROX	SS3_PROX:INTRON	FBXO22	ENSG00000167196.14	ENST00000308275.8:ENST00000569022.1:ENST00000565036.5:ENST00000561885.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	94	2	6.0231	6.046145	6.06919	8.75017e-5	1.23263e-5	0.00840733	0.00261354
chr9	33818234	33818334	4110234	0	+	0.63	(0.57,1]	chr9	374683	3	SS5_PROX	SS5_PROX:INTRON	UBE2R2	ENSG00000107341.5	ENST00000263228.4	protein_coding	protein_coding	protein_coding	protein_coding	0	71	2	5.895	6.03871	6.18242	6.04397e-7	1.22751e-7	4.21585e-4	1.67176e-4
chr2	111241086	111241185	1209247	0	-	0.333333	(0.32,0.35]	chr2	128823	7	INTRON	INTRON	MIR4435-2HG	ENSG00000172965.17	ENST00000645030.2:ENST00000642191.1:ENST00000673798.1:ENST00000645051.2:ENST00000673649.1:ENST00000673962.1:ENST00000674132.1:ENST00000669658.1:ENST00000669917.1:ENST00000661559.1:ENST00000653687.1:ENST00000667670.1:ENST00000609220.2:ENST00000656760.1:ENST00000609902.6:ENST00000666683.1:ENST00000674070.1:ENST00000662335.1:ENST00000664422.1:ENST00000673775.1:ENST00000662889.1:ENST00000665096.1:ENST00000674092.1:ENST00000673958.1:ENST00000673770.1:ENST00000673961.1:ENST00000658936.1:ENST00000662635.1:ENST00000666204.1:ENST00000659458.1:ENST00000664443.1:ENST00000670295.1:ENST00000661655.1:ENST00000666390.1:ENST00000659079.1:ENST00000660442.1:ENST00000664009.1:ENST00000439362.6:ENST00000654473.1:ENST00000664999.1:ENST00000673728.1:ENST00000659791.1:ENST00000666144.1:ENST00000659933.1:ENST00000670715.1:ENST00000656303.1:ENST00000666367.1:ENST00000666652.1:ENST00000669050.1:ENST00000667218.1:ENST00000656067.1:ENST00000653568.1:ENST00000643013.1:ENST00000673866.1:ENST00000673700.1:ENST00000443467.6:ENST00000451884.6:ENST00000669875.1:ENST00000673653.1:ENST00000673988.1:ENST00000661945.1:ENST00000669515.1:ENST00000431385.6:ENST00000655573.1	lncRNA	lncRNA	lncRNA	lncRNA	0	95	2	6.0084	6.031575	6.05475	1.2096e-4	2.68752e-5	0.00992813	0.00408175
chr5	54310530	54310582	2620922	0	-	0.557692	(0.515,0.57]	chr5	248874	2	UTR5	UTR5:EXON_MRNA	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000507646.2:ENST00000505630.5:ENST00000505383.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	275	2	4.79622	6.0291250000000005	7.26203	3.23538e-9	1.56356e-10	1.2263700000000001e-05	1.96873e-6
chr11	105487316	105487416	5030095	0	-	0.38	(0.378,0.408]	chr11	474023	285	INTRON	INTRON	CARD18	ENSG00000255501.3	ENST00000649856.1:ENST00000528811.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	202	2	4.85754	6.022065	7.18659	1.23484e-6	4.61627e-9	7.18278e-4	2.15892e-5
chr10	63358569	63358668	4634316	0	-	0.212121	[0,0.28]	chr10	426226	895	INTRON	INTRON	JMJD1C	ENSG00000171988.20	ENST00000399262.7:ENST00000633035.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	99	2	5.95127	6.011395	6.07152	7.37141e-4	8.28707e-5	0.02495	0.00766104
chr7	128749204	128749304	3408479	0	+	0.31	(0.28,0.32]	chr7	318434	4	SS5_PROX	SS5_PROX:INTRON	CALU	ENSG00000128595.17	ENST00000535011.6:ENST00000542996.6:ENST00000249364.9:ENST00000449187.6:ENST00000479257.5	protein_coding	protein_coding	protein_coding	protein_coding	0	96	2	5.94125	6.010384999999999	6.07952	1.93993e-4	6.50094e-5	0.0127226	0.00668837
chr16	24023046	24023145	6325633	0	+	0.474747	(0.44,0.476]	chr16	605711	341	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000498739.1:ENST00000647422.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	89	2	5.94163	6.007350000000001	6.07307	6.45088e-5	7.17687e-6	0.00711194	0.00189988
chr8	144753082	144753182	4086912	0	-	0.44	(0.408,0.44]	chr8	372200	293	INTRON	INTRON	ZNF251	ENSG00000198169.9	ENST00000524394.2:ENST00000292562.12	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	89	2	5.96668	6.0041899999999995	6.0417	6.36685e-5	8.54902e-6	0.00711194	0.00210871
chr22	47710747	47710847	7540155	0	+	0.37	(0.35,0.378]	chr22	770717	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ENSG00000224271	ENSG00000224271.7	ENST00000664761.1:ENST00000651071.1:ENST00000650683.1:ENST00000651536.1:ENST00000652499.1:ENST00000652656.1:ENST00000652072.1:ENST00000651445.1:ENST00000423737.5:ENST00000650660.1:ENST00000651056.1:ENST00000652611.1:ENST00000652399.1:ENST00000652123.1:ENST00000651311.1:ENST00000651458.1:ENST00000652505.1:ENST00000652702.2:ENST00000652334.1:ENST00000652030.2:ENST00000651403.1:ENST00000652228.1:ENST00000651124.1:ENST00000650972.1:ENST00000651985.1:ENST00000651637.1:ENST00000650924.1:ENST00000651003.1:ENST00000652168.1:ENST00000651948.2:ENST00000651293.1:ENST00000651939.1:ENST00000650787.1:ENST00000651517.1:ENST00000651662.1:ENST00000652690.1:ENST00000651638.1:ENST00000670853.1:ENST00000652750.1:ENST00000652080.1:ENST00000651294.1:ENST00000652164.1:ENST00000651538.1:ENST00000650775.1:ENST00000651983.1:ENST00000651033.1:ENST00000651584.1:ENST00000650884.1:ENST00000651270.1	lncRNA	lncRNA	lncRNA	lncRNA	0	92	2	5.7645	6.004045	6.24359	2.7432e-4	4.53314e-6	0.0151711	0.00143802
chr10	42806112	42806212	4428268	0	+	0.41	(0.408,0.44]	chr10	408133	35	INTRON	INTRON	BMS1	ENSG00000165733.8	ENST00000374518.6	protein_coding	protein_coding	protein_coding	protein_coding	0	89	2	5.99788	6.0034600000000005	6.00904	5.47233e-5	1.03233e-5	0.00651589	0.00235018
chrX	153451200	153451300	7910201	0	-	0.53	(0.515,0.57]	chrX	804959	29	INTRON	INTRON	HAUS7	ENSG00000213397.12	ENST00000370211.10:ENST00000484394.5:ENST00000435662.1:ENST00000460898.5:ENST00000437046.6:ENST00000491286.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	254	2	5.47458	6.00295	6.53132	5.92153e-7	5.8018e-12	4.50891e-4	2.03503e-7
chr21	31698134	31698233	7437482	0	-	0.252525	[0,0.28]	chr21	758655	10	INTRON	INTRON	SCAF4	ENSG00000156304.15	ENST00000286835.12:ENST00000399804.5:ENST00000434667.3:ENST00000467731.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	100	2	5.69866	6.002845000000001	6.30703	0.00175225	2.7002e-5	0.0376491	0.00409374
chr1	16322520	16322619	382320	0	-	0.373737	(0.35,0.378]	chr1	44888	67	INTRON	INTRON	FBXO42	ENSG00000037637.11	ENST00000375592.8	protein_coding	protein_coding	protein_coding	protein_coding	0	91	2	5.89959	5.999675	6.09976	1.52893e-4	1.03844e-5	0.0112857	0.00235262
chr13	105712410	105712509	5533745	0	+	0.333333	(0.32,0.35]	chr13	529031	42	INTRON	INTRON	LINC00343	ENSG00000226620.8	ENST00000599179.2:ENST00000667582.1:ENST00000671026.1:ENST00000596398.6:ENST00000656290.1:ENST00000601607.6:ENST00000663594.1:ENST00000667429.1:ENST00000653178.1:ENST00000660821.1:ENST00000598478.2:ENST00000454555.2:ENST00000667492.1:ENST00000669807.1:ENST00000655625.1:ENST00000671060.1:ENST00000653504.1:ENST00000659258.1:ENST00000656920.1:ENST00000670771.1:ENST00000655201.1:ENST00000670433.1:ENST00000668581.1:ENST00000668362.1:ENST00000667217.1:ENST00000608426.2:ENST00000663744.1:ENST00000660976.1:ENST00000658308.1:ENST00000661872.1:ENST00000663287.1:ENST00000655741.1:ENST00000665747.1:ENST00000669706.1:ENST00000656267.1:ENST00000670308.1:ENST00000660236.1:ENST00000659016.1:ENST00000665309.1:ENST00000670977.1:ENST00000661301.1:ENST00000660560.1:ENST00000660294.1:ENST00000659909.1:ENST00000662500.1:ENST00000663045.1:ENST00000667987.1:ENST00000668272.1:ENST00000666696.1:ENST00000658024.1:ENST00000670430.1:ENST00000666948.1:ENST00000663761.1:ENST00000670555.1:ENST00000661817.1:ENST00000669887.1:ENST00000667685.1:ENST00000667106.1:ENST00000664201.1:ENST00000669675.1:ENST00000655062.1:ENST00000658095.1:ENST00000658711.1:ENST00000654132.1:ENST00000658692.1:ENST00000661079.1:ENST00000671053.1:ENST00000666322.1:ENST00000656646.1:ENST00000669035.1:ENST00000663194.1:ENST00000669655.1:ENST00000664695.1:ENST00000659496.1:ENST00000658169.1:ENST00000664522.1:ENST00000669540.1:ENST00000655448.1:ENST00000671561.1:ENST00000663969.1:ENST00000668396.1:ENST00000656539.1:ENST00000657599.1:ENST00000599264.2:ENST00000668939.1:ENST00000653600.1:ENST00000670303.1:ENST00000670821.1:ENST00000670530.1:ENST00000656615.1:ENST00000670114.1:ENST00000664140.1:ENST00000669886.1:ENST00000654919.1:ENST00000655173.1:ENST00000666040.1:ENST00000669959.1:ENST00000661976.1:ENST00000669507.1:ENST00000659165.1:ENST00000654352.1:ENST00000669144.1:ENST00000654086.1:ENST00000654904.1:ENST00000671516.1:ENST00000661782.1:ENST00000670546.1:ENST00000669264.1:ENST00000664090.1:ENST00000668080.1:ENST00000664796.1:ENST00000656479.1:ENST00000671402.1:ENST00000669497.1:ENST00000668279.1:ENST00000653082.1:ENST00000657690.1:ENST00000415294.3:ENST00000655206.1:ENST00000657324.1:ENST00000669840.1:ENST00000670429.1:ENST00000658151.1:ENST00000667534.1:ENST00000668966.1	lncRNA	lncRNA	lncRNA	lncRNA	0	95	2	5.62795	5.998725	6.3695	7.01392e-4	3.63071e-6	0.024224	0.00124237
chr19	21173859	21173958	7040280	0	+	0.20202	[0,0.28]	chr19	701950	36	INTRON	INTRON	ZNF431	ENSG00000196705.8	ENST00000600692.5:ENST00000599296.5:ENST00000594425.5:ENST00000311048.11:ENST00000598331.1	protein_coding	protein_coding	protein_coding	protein_coding	0	98	2	5.83049	5.992430000000001	6.15437	0.00112548	5.63626e-5	0.0306963	0.00613846
chr14	39477704	39477802	5702260	0	+	0.397959	(0.378,0.408]	chr14	542151	24	INTRON	INTRON	ENSG00000258526	ENSG00000258526.8	ENST00000650949.2:ENST00000659455.1:ENST00000652126.1:ENST00000662464.1:ENST00000651829.1:ENST00000665100.1:ENST00000655630.1:ENST00000650911.1:ENST00000656325.1:ENST00000662828.1:ENST00000666800.1:ENST00000657790.1:ENST00000556620.2:ENST00000554328.5:ENST00000661572.1:ENST00000654145.1:ENST00000557197.1	lncRNA	lncRNA	lncRNA	lncRNA	0	89	2	5.91885	5.989885	6.06092	1.02858e-4	9.1834e-6	0.00915589	0.00217645
chr22	16799370	16799470	7546393	0	-	0.34	(0.32,0.35]	chr22	771316	2	SS5_PROX	SS5_PROX:INTRON	XKR3	ENSG00000172967.8	ENST00000331428.5:ENST00000684488.1	protein_coding	protein_coding	protein_coding	protein_coding	0	93	2	5.84127	5.989425	6.13758	8.35107e-5	6.29724e-5	0.00815123	0.00658818
chr1	203806213	203806313	296786	0	+	0.41	(0.408,0.44]	chr1	34134	28	INTRON	INTRON	ZC3H11A:ZBED6	ENSG00000058673.17:ENSG00000257315.3	ENST00000367210.3:ENST00000453771.5:ENST00000432282.5:ENST00000638800.1:ENST00000367214.5:ENST00000639812.1:ENST00000367212.7:ENST00000332127.8:ENST00000550078.2:ENST00000495527.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	88	2	5.93478	5.988239999999999	6.0417	7.42058e-5	8.54902e-6	0.00770735	0.00210871
chr11	6484189	6484287	4727793	0	+	0.510204	(0.476,0.515]	chr11	437617	21	UTR3	UTR3:EXON_MRNA	TIMM10B	ENSG00000132286.12	ENST00000254616.11	protein_coding	protein_coding	protein_coding	protein_coding	0	88	2	5.74155	5.98	6.21845	1.47804e-4	3.2177e-6	0.0111067	0.0011644
chr11	68094140	68094239	4972323	0	-	0.313131	(0.28,0.32]	chr11	469432	44	INTRON	INTRON	CHKA	ENSG00000110721.12	ENST00000265689.9:ENST00000356135.9:ENST00000531341.1	protein_coding	protein_coding	protein_coding	protein_coding	0	94	2	5.84109	5.97384	6.10659	1.73268e-4	1.04715e-4	0.0120833	0.00863456
chr6	156966947	156967047	3009060	0	+	0.42	(0.408,0.44]	chr6	281124	232	INTRON	INTRON	ARID1B	ENSG00000049618.24	ENST00000346085.10:ENST00000636930.2:ENST00000647938.1:ENST00000350026.10:ENST00000674298.1:ENST00000674190.1:ENST00000414678.7:ENST00000638000.1:ENST00000319584.11:ENST00000452544.2:ENST00000637887.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	87	2	5.94142	5.96965	5.99788	5.47233e-5	1.51568e-5	0.00651589	0.00293131
chr12	8776606	8776704	5072779	0	+	0.214286	[0,0.28]	chr12	479573	30	UTR3	UTR3:EXON_MRNA:INTRON	RIMKLB	ENSG00000166532.16	ENST00000544257.5:ENST00000357529.7:ENST00000535829.6:ENST00000299673.5:ENST00000538135.5:ENST00000619374.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	96	2	5.89214	5.967475	6.04281	9.08725e-4	9.4496e-5	0.0278396	0.00815237
chr21	37371912	37372011	7406272	0	+	0.222222	[0,0.28]	chr21	754846	34	INTRON	INTRON	DYRK1A	ENSG00000157540.22	ENST00000646523.1:ENST00000647425.1:ENST00000647188.2:ENST00000647504.1:ENST00000644942.1:ENST00000338785.8:ENST00000643624.1:ENST00000643551.1:ENST00000426672.6	protein_coding	protein_coding	protein_coding	protein_coding	2	291	2	4.51337	5.95058	7.38779	1.42866e-6	4.32177e-7	7.79027e-4	3.43963e-4
chr19	28517720	28517820	7166272	0	-	0.16	[0,0.28]	chr19	724189	495	INTRON	INTRON	ENSG00000283403:ENSG00000267243	ENSG00000283403.1:ENSG00000267243.6	ENST00000592347.5:ENST00000593065.5	lncRNA	lncRNA	lncRNA	lncRNA	1	217	2	4.6585	5.9499949999999995	7.24149	5.68659e-6	2.96304e-6	0.00165922	0.00120829
chr5	36898482	36898582	2338647	0	+	0.41	(0.408,0.44]	chr5	225949	121	INTRON	INTRON	NIPBL	ENSG00000164190.19	ENST00000282516.13:ENST00000448238.2:ENST00000652901.1	protein_coding	protein_coding	protein_coding	protein_coding	0	86	2	5.87047	5.949450000000001	6.02843	4.71156e-5	2.24671e-5	0.00593131	0.0036973
chr12	22663702	22663802	5095137	0	+	0.25	[0,0.28]	chr12	481256	21	INTRON	INTRON	ETNK1	ENSG00000139163.16	ENST00000671733.1:ENST00000266517.9:ENST00000538218.2:ENST00000673406.1:ENST00000673188.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	96	2	5.62793	5.942925000000001	6.25792	0.0022037	3.43383e-5	0.0417893	0.0046762
chr15	63830322	63830422	6200869	0	-	0.3	(0.28,0.32]	chr15	591445	494	INTRON	INTRON	HERC1	ENSG00000103657.14	ENST00000443617.7:ENST00000561400.1:ENST00000559886.1:ENST00000558532.1:ENST00000560462.1:ENST00000560316.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	92	2	5.67157	5.9386600000000005	6.20575	9.48957e-4	1.70903e-5	0.0281755	0.00314439
chr1	35187751	35187811	420546	0	-	0.216667	[0,0.28]	chr1	50665	1	SS5_PROX	SS5_PROX:INTRON	SFPQ	ENSG00000116560.12	ENST00000470472.5:ENST00000460428.5:ENST00000696553.1:ENST00000357214.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	98	2	5.56611	5.93738	6.30865	7.02173e-4	1.91171e-4	0.0241881	0.0126567
chr18	9917218	9917317	6873373	0	+	0.151515	[0,0.28]	chr18	680866	10	INTRON	INTRON	VAPA	ENSG00000101558.14	ENST00000400000.7:ENST00000577901.5:ENST00000340541.4:ENST00000585042.5:ENST00000578314.1:ENST00000584796.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	288	2	4.29669	5.93735	7.57801	1.65595e-6	5.38613e-7	7.78157e-4	4.28078e-4
chrX	77899439	77899496	7684940	0	+	0.45614	(0.44,0.476]	chrX	786803	1	UTR5	UTR5:EXON_MRNA	COX7B	ENSG00000131174.7	ENST00000373335.4:ENST00000475465.1:ENST00000650309.2:ENST00000647835.1	protein_coding	protein_coding	protein_coding	protein_coding	0	86	2	5.6175	5.93431	6.25112	2.84938e-4	2.45362e-6	0.015495	9.94123e-4
chr9	19091219	19091316	4236483	0	-	0.515464	(0.515,0.57]	chr9	389416	13	INTRON	INTRON	HAUS6	ENSG00000147874.11	ENST00000380502.8:ENST00000380496.5	protein_coding	protein_coding	protein_coding	protein_coding	0	81	2	5.69575	5.93398	6.17221	7.34886e-5	1.49517e-6	0.00767614	7.32023e-4
chr2	87801486	87801584	1172952	0	-	0.27551	[0,0.28]	chr2	125238	4	INTRON	INTRON	RGPD2	ENSG00000185304.16	ENST00000398146.5	protein_coding	protein_coding	protein_coding	protein_coding	0	94	2	5.76608	5.932874999999999	6.09967	0.00140074	7.27783e-5	0.0340865	0.00711523
chr10	119078929	119079028	4704908	0	-	0.414141	(0.408,0.44]	chr10	434016	46	INTRON	INTRON	EIF3A	ENSG00000107581.13	ENST00000369144.8:ENST00000541549.2	protein_coding	protein_coding	protein_coding	protein_coding	0	86	2	5.71717	5.9308499999999995	6.14453	5.09043e-5	2.6318e-5	0.00585477	0.00424204
chr4	78816357	78816457	1981785	0	+	0.27	[0,0.28]	chr4	198463	393	INTRON	INTRON	BMP2K	ENSG00000138756.19	ENST00000389010.7:ENST00000502613.3:ENST00000502871.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	94	2	5.73276	5.93002	6.12728	0.00156565	6.40034e-5	0.0360583	0.00661396
chr1	108948676	108948768	519026	0	-	0.304348	(0.28,0.32]	chr1	60913	6	INTRON	INTRON	CLCC1	ENSG00000121940.17	ENST00000690509.1:ENST00000687328.1:ENST00000685014.1:ENST00000685540.1:ENST00000686576.1:ENST00000688070.1:ENST00000691513.1:ENST00000686821.1:ENST00000692511.1:ENST00000689479.1:ENST00000687646.1:ENST00000687998.1:ENST00000687226.1:ENST00000693336.1:ENST00000689991.1:ENST00000687591.1:ENST00000691777.1:ENST00000690756.1:ENST00000688778.1:ENST00000685104.1:ENST00000689103.1:ENST00000687734.1:ENST00000686434.1:ENST00000685497.1:ENST00000691342.1:ENST00000686776.1:ENST00000692342.1:ENST00000689351.1:ENST00000692584.1:ENST00000692775.1:ENST00000687134.1:ENST00000675018.1:ENST00000690781.1:ENST00000691556.1:ENST00000689189.1:ENST00000687099.1:ENST00000685791.1:ENST00000687865.1:ENST00000687449.1:ENST00000688285.1:ENST00000686817.1:ENST00000369968.7:ENST00000674992.1:ENST00000675001.1:ENST00000369969.7:ENST00000356970.6:ENST00000688610.1:ENST00000675128.1:ENST00000693089.1:ENST00000675571.1:ENST00000675650.1:ENST00000369970.8:ENST00000674561.2:ENST00000675451.1:ENST00000675654.1:ENST00000675790.1:ENST00000675584.1:ENST00000692795.1:ENST00000691731.1:ENST00000689359.1:ENST00000676392.2:ENST00000676391.2:ENST00000676454.1:ENST00000674849.1:ENST00000675956.1:ENST00000302500.5:ENST00000675508.1:ENST00000688168.1:ENST00000693673.1:ENST00000692404.1:ENST00000686078.1:ENST00000690874.1:ENST00000692732.1:ENST00000685628.1:ENST00000676306.1:ENST00000348264.6:ENST00000675247.2:ENST00000676059.2:ENST00000674527.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	91	2	5.70739	5.929205	6.15102	8.32651e-4	2.27393e-5	0.0266389	0.00372337
chr6	24665894	24665986	3070564	0	-	0.380435	(0.378,0.408]	chr6	285331	4	SS5_PROX	SS5_PROX:INTRON	TDP2	ENSG00000111802.14	ENST00000378198.9:ENST00000341060.3:ENST00000478507.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	86	2	5.78318	5.927435	6.07169	4.98726e-5	4.21479e-5	0.00611327	0.0052571
chr15	89246930	89247029	6095758	0	+	0.464646	(0.44,0.476]	chr15	580074	7	INTRON	INTRON	FANCI	ENSG00000140525.20	ENST00000674831.1:ENST00000300027.12:ENST00000568670.5:ENST00000567891.5:ENST00000310775.12:ENST00000696717.1:ENST00000676003.1:ENST00000565255.5:ENST00000564920.5:ENST00000696718.1:ENST00000447611.6:ENST00000570110.1:ENST00000696719.1:ENST00000567996.5:ENST00000563250.5:ENST00000565522.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	84	2	5.84147	5.92497	6.00847	1.03947e-4	1.04381e-5	0.00915599	0.00235341
chr17	76561705	76561751	6677378	0	+	0.347826	(0.32,0.35]	chr17	652146	1	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	SNHG16	ENSG00000163597.16	ENST00000661348.2:ENST00000670737.2:ENST00000653677.2:ENST00000493536.7:ENST00000667091.1:ENST00000586942.7:ENST00000591956.1:ENST00000586846.2:ENST00000692197.1:ENST00000448136.5:ENST00000668511.1:ENST00000590435.5:ENST00000587838.2:ENST00000686755.1	lncRNA	lncRNA	lncRNA	lncRNA	0	88	2	5.90515	5.9245	5.94385	2.30541e-4	3.75519e-5	0.013917	0.00490694
chr17	81686214	81686311	6691017	0	+	0.412371	(0.408,0.44]	chr17	654014	6	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	HGS	ENSG00000185359.14	ENST00000677161.1:ENST00000678096.1:ENST00000679191.1:ENST00000676546.1:ENST00000678387.1:ENST00000679170.1:ENST00000677109.1:ENST00000677484.1:ENST00000678115.1:ENST00000677243.1:ENST00000677044.1:ENST00000679336.1:ENST00000678196.1:ENST00000676462.1:ENST00000576393.5:ENST00000576498.5:ENST00000678105.1:ENST00000676478.1:ENST00000329138.9:ENST00000676721.1:ENST00000677209.1:ENST00000677225.1:ENST00000678866.1:ENST00000679275.1:ENST00000678541.1:ENST00000676729.1:ENST00000572392.2:ENST00000677012.1:ENST00000577012.1:ENST00000571518.6:ENST00000678846.1:ENST00000678658.1:ENST00000576087.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	172	2	5.00858	5.923920000000001	6.83926	5.24082e-7	1.10884e-7	4.21981e-4	1.47965e-4
chr1	25316570	25316669	403051	0	-	0.40404	(0.378,0.408]	chr1	48398	93	INTRON	INTRON	RSRP1	ENSG00000117616.18	ENST00000473314.6:ENST00000561867.1:ENST00000568996.1:ENST00000568399.1:ENST00000562018.1:ENST00000567741.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	85	2	5.89369	5.922215	5.95074	8.87003e-5	2.33849e-5	0.00842626	0.00378116
chr5	33445965	33446065	2335174	0	+	0.37	(0.35,0.378]	chr5	225408	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	TARS1	ENSG00000113407.14	ENST00000502553.5:ENST00000514259.5:ENST00000502508.5:ENST00000508361.5:ENST00000265112.8:ENST00000455217.6:ENST00000507716.5:ENST00000509731.5:ENST00000505012.5:ENST00000513066.3:ENST00000627006.2:ENST00000626210.1:ENST00000506040.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	89	2	5.49258	5.920865	6.34915	8.19894e-4	2.4104600000000002e-06	0.0264086	9.83942e-4
chr17	37329872	37329972	6762276	0	-	0.47	(0.44,0.476]	chr17	664951	3	SS5_PROX	SS5_PROX:INTRON	ACACA	ENSG00000278540.5	ENST00000616317.5:ENST00000614428.4:ENST00000613146.4:ENST00000615229.4:ENST00000621960.1:ENST00000617548.1:ENST00000616352.4:ENST00000614789.4:ENST00000614438.1:ENST00000612007.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:non_stop_decay:nonsense_mediated_decay	0	84	2	5.73383	5.91907	6.10431	1.70474e-4	5.97057e-6	0.0119761	0.00171457
chr4	32048190	32048289	1941930	0	+	0.242424	[0,0.28]	chr4	194727	500	INTRON	INTRON	LINC02506	ENSG00000251129.3	ENST00000662669.1:ENST00000665582.2:ENST00000667252.2:ENST00000660373.2:ENST00000684849.1:ENST00000513211.2:ENST00000659613.1:ENST00000657576.1:ENST00000686730.1:ENST00000685407.1:ENST00000685455.1:ENST00000655951.1	lncRNA	lncRNA	lncRNA	lncRNA	0	93	2	5.76608	5.918799999999999	6.07152	0.00140074	8.28707e-5	0.0340865	0.00766104
chr16	75544361	75544459	6529624	0	-	0.520408	(0.515,0.57]	chr16	632421	10	INTRON	INTRON	TMEM231	ENSG00000205084.12	ENST00000258173.11:ENST00000562410.5:ENST00000692097.1:ENST00000686680.1:ENST00000688195.1:ENST00000692689.1:ENST00000688270.1:ENST00000568377.5:ENST00000693682.1:ENST00000693457.1:ENST00000689040.1:ENST00000685935.1:ENST00000688618.1:ENST00000565067.5:ENST00000570006.5:ENST00000569294.1:ENST00000686547.1:ENST00000564576.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	159	2	5.25503	5.91548	6.57593	4.41924e-7	8.14876e-9	3.81087e-4	3.10197e-5
chr21	6494799	6494898	7425425	0	-	0.363636	(0.35,0.378]	chr21	757479	18	EXON_MRNA	EXON_MRNA:INTRON	ENSG00000275895	ENSG00000275895.7	ENST00000610664.5:ENST00000623375.3:ENST00000639996.1:ENST00000620065.4:ENST00000624739.1:ENST00000619610.2:ENST00000636315.1:ENST00000637031.1:ENST00000636177.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	86	2	5.79808	5.91059	6.0231	8.75017e-5	5.23926e-5	0.00840733	0.00590498
chr5	458608	458691	2313225	0	+	0.53012	(0.515,0.57]	chr5	223779	2	INTRON	INTRON	EXOC3	ENSG00000180104.16	ENST00000512944.6:ENST00000515601.6:ENST00000315013.9:ENST00000503889.2:ENST00000510028.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	79	2	5.86296	5.908545	5.95413	1.89589e-5	1.02967e-5	0.00354138	0.00235018
chr4	76125256	76125355	2164196	0	-	0.444444	(0.44,0.476]	chr4	213444	1	INTRON	INTRON	NUP54	ENSG00000138750.16	ENST00000695546.1:ENST00000695547.1:ENST00000695552.1:ENST00000508604.5:ENST00000507257.6:ENST00000264883.8:ENST00000510569.6:ENST00000515460.6:ENST00000695554.1:ENST00000695553.1:ENST00000695548.1:ENST00000695551.1:ENST00000695556.1:ENST00000695549.1:ENST00000695550.1:ENST00000695555.1:ENST00000514313.2:ENST00000514987.6:ENST00000502850.5:ENST00000508465.6:ENST00000512151.5:ENST00000504173.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	83	2	5.77061	5.90587	6.04113	1.44264e-4	8.64562e-6	0.0109794	0.00211124
chr8	102267292	102267387	4011233	0	-	0.368421	(0.35,0.378]	chr8	366984	4	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	UBR5	ENSG00000104517.13	ENST00000520539.6:ENST00000220959.8:ENST00000521922.5:ENST00000518205.5:ENST00000521767.1:ENST00000521312.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	85	2	5.86698	5.903485	5.93999	1.76496e-4	2.49725e-5	0.01216	0.00392542
chr9	89329080	89329178	4153132	0	+	0.428571	(0.408,0.44]	chr9	378815	3	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	SECISBP2	ENSG00000187742.15	ENST00000375807.8:ENST00000339901.8:ENST00000534113.6:ENST00000470305.1:ENST00000425851.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	83	2	5.76377	5.902735	6.0417	1.64089e-4	8.54902e-6	0.0116917	0.00210871
chr19	28516316	28516415	7046852	0	+	0.59596	(0.57,1]	chr19	702495	66	INTRON	INTRON	ENSG00000267423	ENSG00000267423.1	ENST00000592931.1	lncRNA	lncRNA	lncRNA	lncRNA	0	64	2	5.82044	5.902085	5.98373	1.81133e-6	3.07374e-7	9.08125e-4	2.76446e-4
chr17	48913321	48913421	6624428	0	+	0.49	(0.476,0.515]	chr17	646554	3	SS5_PROX	SS5_PROX:INTRON	UBE2Z	ENSG00000159202.18	ENST00000360943.10:ENST00000508468.2:ENST00000506498.5:ENST00000511373.1:ENST00000504684.5:ENST00000513342.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	85	2	5.49867	5.90004	6.30141	4.28561e-4	1.92774e-6	0.0189958	8.42956e-4
chr19	11824468	11824568	7019004	0	+	0.26	[0,0.28]	chr19	697799	69	INTRON	INTRON	ZNF440	ENSG00000171295.13	ENST00000304060.10:ENST00000457526.1:ENST00000427505.5:ENST00000588954.5	protein_coding	protein_coding	protein_coding	protein_coding	0	97	2	5.43968	5.8964300000000005	6.35318	0.00113119	1.59966e-4	0.0308465	0.0115755
chr7	128080959	128081059	3406718	0	+	0.49	(0.476,0.515]	chr7	318205	2	SS3_PROX	SS3_PROX:INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000486037.1:ENST00000470723.5:ENST00000470463.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	82	2	5.8142	5.892395	5.97059	1.0551e-4	1.37724e-5	0.00920724	0.00276767
chr10	73777943	73778039	4454109	0	+	0.5	(0.476,0.515]	chr10	411177	19	INTRON	INTRON	FUT11	ENSG00000196968.11	ENST00000489264.2	protein_coding	processed_transcript	protein_coding	processed_transcript	0	82	2	5.88337	5.89236	5.90135	7.59355e-5	2.02515e-5	0.00777694	0.00348937
chr5	98912675	98912774	2683911	0	-	0.313131	(0.28,0.32]	chr5	253957	72	INTRON	INTRON	CHD1	ENSG00000153922.11	ENST00000614616.5:ENST00000284049.7	protein_coding	protein_coding	protein_coding	protein_coding	0	88	2	5.87424	5.8914349999999995	5.90863	4.43011e-4	7.60626e-5	0.0194241	0.00731806
chrX	114049947	114050047	7868541	0	-	0.35	(0.32,0.35]	chrX	801557	71	INTRON	INTRON	XACT	ENSG00000241743.4	ENST00000468762.3:ENST00000649506.1	lncRNA	lncRNA	lncRNA	lncRNA	0	86	2	5.87628	5.890715	5.90515	2.30541e-4	5.28936e-5	0.013917	0.00592337
chr18	14124121	14124197	6952545	0	-	0.381579	(0.378,0.408]	chr18	687751	2	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	ZNF519	ENSG00000175322.12	ENST00000592345.5:ENST00000589203.5:ENST00000587419.5:ENST00000592049.5:ENST00000592411.5:ENST00000591393.1:ENST00000590202.3:ENST00000589498.5:ENST00000588435.1:ENST00000587512.5:ENST00000586507.1:ENST00000591987.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	87	2	5.48672	5.8867899999999995	6.28686	1.83012e-4	1.69472e-5	0.01176	0.00330681
chr17	59129391	59129490	6802140	0	-	0.333333	(0.32,0.35]	chr17	671849	46	INTRON	INTRON	SKA2	ENSG00000182628.13	ENST00000330137.12:ENST00000580541.1:ENST00000578105.1:ENST00000578519.5:ENST00000583927.1:ENST00000581068.5:ENST00000437036.6:ENST00000583380.5:ENST00000583976.1:ENST00000584089.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	92	2	5.2845	5.885955	6.48741	0.00240071	1.80145e-6	0.0440612	8.11578e-4
chrX	24160216	24160315	7631106	0	+	0.141414	[0,0.28]	chrX	781525	70	INTRON	INTRON	ZFX	ENSG00000005889.16	ENST00000428571.5:ENST00000539115.5:ENST00000379188.7:ENST00000304543.10:ENST00000419690.5:ENST00000379177.5:ENST00000459724.1:ENST00000480195.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	96	2	5.3489	5.88593	6.42296	0.00514751	1.51071e-5	0.062965	0.00293131
chr19	16872367	16872467	7027816	0	+	0.5	(0.476,0.515]	chr19	699541	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	SIN3B	ENSG00000127511.10	ENST00000248054.10:ENST00000379803.5:ENST00000595541.1:ENST00000595900.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	81	2	5.74155	5.8727800000000006	6.00401	1.47804e-4	1.13973e-5	0.0111067	0.00249332
chr5	69574241	69574340	2381533	0	+	0.323232	(0.32,0.35]	chr5	229499	13	INTRON	INTRON	GTF2H2C	ENSG00000183474.16	ENST00000380729.8:ENST00000514069.6:ENST00000502619.5:ENST00000506129.5:ENST00000510979.5:ENST00000514162.5:ENST00000446221.6:ENST00000507595.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	85	2	5.7024	5.87101	6.03962	5.25722e-4	2.28019e-5	0.0210958	0.0037274
chrX	23837312	23837412	7774248	0	-	0.34	(0.32,0.35]	chrX	794722	33	INTRON	INTRON	APOO	ENSG00000184831.14	ENST00000379226.9:ENST00000633432.1:ENST00000634086.1:ENST00000476598.1:ENST00000439528.5:ENST00000490078.2:ENST00000633609.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	85	2	5.7024	5.87101	6.03962	5.25722e-4	2.28019e-5	0.0210958	0.0037274
chr12	22645541	22645636	5094949	0	+	0.189474	[0,0.28]	chr12	481232	11	INTRON	INTRON	ETNK1	ENSG00000139163.16	ENST00000671733.1:ENST00000266517.9:ENST00000538218.2:ENST00000673496.1:ENST00000673406.1:ENST00000672995.1:ENST00000539974.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	90	2	5.66373	5.867625	6.07152	0.00196371	8.28707e-5	0.0401678	0.00766104
chr6	68686420	68686520	2886830	0	+	0.39	(0.378,0.408]	chr6	273730	466	INTRON	INTRON	ADGRB3	ENSG00000135298.15	ENST00000370598.6:ENST00000684661.1:ENST00000546190.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	83	2	5.6635	5.867595	6.07169	7.77533e-5	4.98726e-5	0.00735438	0.00611327
chr7	141746243	141746337	3440181	0	+	0.5	(0.476,0.515]	chr7	320694	8	EXON_MRNA	EXON_MRNA:INTRON	SSBP1	ENSG00000106028.11	ENST00000612337.4:ENST00000265304.11:ENST00000498107.5:ENST00000489378.5:ENST00000469123.5:ENST00000467681.5:ENST00000465582.5:ENST00000465167.1:ENST00000484178.5:ENST00000481508.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	82	2	5.5421	5.8659	6.1897	3.56777e-4	3.83137e-6	0.0175154	0.00129308
chr9	130076640	130076719	4211183	0	+	0.455696	(0.44,0.476]	chr9	386003	2	SS5_PROX	SS5_PROX:INTRON	GPR107	ENSG00000148358.20	ENST00000372406.5:ENST00000372410.7:ENST00000347136.11:ENST00000493417.5:ENST00000610997.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	81	2	5.6175	5.860905	6.10431	2.84938e-4	5.97057e-6	0.015495	0.00171457
chr14	96867298	96867397	5811579	0	+	0.262626	[0,0.28]	chr14	551089	25	EXON_MRNA	EXON_MRNA:INTRON	VRK1	ENSG00000100749.9	ENST00000553683.2:ENST00000680538.1:ENST00000681195.1:ENST00000681524.1:ENST00000680084.1:ENST00000679533.1:ENST00000681598.1:ENST00000679727.1:ENST00000679758.1:ENST00000679977.1:ENST00000680387.1:ENST00000680335.1:ENST00000680683.1:ENST00000681474.1:ENST00000216639.8:ENST00000681363.1:ENST00000681538.1:ENST00000680922.1:ENST00000679903.1:ENST00000681101.1:ENST00000681419.1:ENST00000679941.1:ENST00000680849.1:ENST00000679770.1:ENST00000681493.1:ENST00000681778.1:ENST00000680993.1:ENST00000681355.1:ENST00000681695.1:ENST00000681344.1:ENST00000680007.1:ENST00000679918.1:ENST00000679816.1:ENST00000680756.1:ENST00000681249.1:ENST00000680526.1:ENST00000679365.1:ENST00000680851.1:ENST00000679506.1:ENST00000679650.1:ENST00000679462.1:ENST00000680724.1:ENST00000681061.1:ENST00000681677.1:ENST00000679843.1:ENST00000555067.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	89	2	5.83049	5.860255	5.89002	0.00112548	1.86278e-4	0.0306963	0.0119078
chr10	69381986	69382086	4446521	0	+	0.29	(0.28,0.32]	chr10	410278	1	SS3_PROX	SS3_PROX:INTRON	HK1	ENSG00000156515.24	ENST00000436817.6:ENST00000360289.6:ENST00000448642.6:ENST00000643399.2:ENST00000298649.8:ENST00000359426.7:ENST00000493591.6:ENST00000494253.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	87	2	5.69571	5.85975	6.02379	2.44054e-4	2.03259e-4	0.0144024	0.0124395
chr7	121194127	121194227	3395710	0	+	0.52	(0.515,0.57]	chr7	317781	441	INTRON	INTRON	CPED1	ENSG00000106034.18	ENST00000310396.10:ENST00000450913.6:ENST00000423795.5:ENST00000466055.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	78	2	5.56617	5.85502	6.14387	5.44229e-5	6.48417e-6	0.00603408	0.00192811
chr16	89487738	89487838	6543574	0	-	0.36	(0.35,0.378]	chr16	634281	561	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	171	2	4.87962	5.85027	6.82092	1.40262e-6	3.98606e-7	7.74096e-4	3.26778e-4
chr3	143039060	143039160	1529482	0	+	0.33	(0.32,0.35]	chr3	159452	1	SS5_PROX	SS5_PROX:INTRON	U2SURP	ENSG00000163714.18	ENST00000488497.7:ENST00000473835.7:ENST00000493598.6:ENST00000463563.6:ENST00000480029.5:ENST00000467348.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	84	2	5.58923	5.84467	6.10011	8.12357e-4	1.65055e-5	0.0263656	0.00306436
chr16	22467788	22467879	6322252	0	+	0.285714	(0.28,0.32]	chr16	605344	1	INTRON	INTRON	SMG1P1	ENSG00000237296.10	ENST00000381231.5:ENST00000309865.11:ENST00000687936.1:ENST00000691423.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	85	2	5.84109	5.841735	5.84238	5.0114e-4	1.04715e-4	0.0206993	0.00863456
chr8	125004525	125004625	3853286	0	+	0.25	[0,0.28]	chr8	355142	7	INTRON	INTRON	SQLE	ENSG00000104549.12	ENST00000523430.5:ENST00000265896.10:ENST00000521232.1	protein_coding	protein_coding	protein_coding	protein_coding	0	88	2	5.62793	5.83537	6.04281	0.0022037	9.4496e-5	0.0417893	0.00815237
chr3	6586347	6586447	1357107	0	+	0.28	[0,0.28]	chr3	142522	19	INTRON	INTRON	ENSG00000189229	ENSG00000189229.12	ENST00000433639.1:ENST00000655754.1:ENST00000658468.1:ENST00000669512.1:ENST00000667028.1:ENST00000655541.1:ENST00000668643.1:ENST00000671568.1:ENST00000671036.1:ENST00000669798.1:ENST00000655753.1:ENST00000655856.1:ENST00000658398.1:ENST00000661518.1:ENST00000661279.1:ENST00000655495.1:ENST00000663041.1:ENST00000659827.1:ENST00000667716.1:ENST00000668416.1:ENST00000658133.1:ENST00000342990.4:ENST00000660054.1:ENST00000671370.1	lncRNA	lncRNA	lncRNA	lncRNA	0	89	2	5.60591	5.834315	6.06272	6.01442e-4	4.91495e-4	0.0223465	0.0205704
chr3	187012214	187012313	1586999	0	+	0.414141	(0.408,0.44]	chr3	164349	58	INTRON	INTRON	ST6GAL1	ENSG00000073849.16	ENST00000676786.1:ENST00000169298.8:ENST00000457772.6:ENST00000455441.5:ENST00000427315.5:ENST00000677292.1:ENST00000458216.5:ENST00000430309.5:ENST00000417392.5:ENST00000438590.5:ENST00000448408.5:ENST00000676633.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	162	2	4.72506	5.832085	6.93911	8.36161e-7	2.81692e-7	5.18092e-4	2.88324e-4
chr2	32167299	32167399	729791	0	+	0.52	(0.515,0.57]	chr2	84142	10	INTRON	INTRON	SLC30A6	ENSG00000152683.14	ENST00000357055.7:ENST00000435660.5:ENST00000282587.9:ENST00000449777.5:ENST00000454324.5:ENST00000379343.6:ENST00000440718.5:ENST00000406369.2:ENST00000457724.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	75	2	5.61254	5.827705	6.04287	1.10757e-4	3.43305e-6	0.00945003	0.00120545
chr3	33832958	33833058	1394743	0	+	0.27	[0,0.28]	chr3	146077	36	INTRON	INTRON	PDCD6IP	ENSG00000170248.15	ENST00000457054.6:ENST00000648706.1:ENST00000307296.8:ENST00000412887.5:ENST00000482561.1:ENST00000487821.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	87	2	5.73276	5.82733	5.9219	0.00156565	1.62133e-4	0.0360583	0.0109774
chr17	49048158	49048257	6625135	0	+	0.252525	[0,0.28]	chr17	646677	14	INTRON	INTRON	IGF2BP1	ENSG00000159217.10	ENST00000290341.8:ENST00000431824.2	protein_coding	protein_coding	protein_coding	protein_coding	0	88	2	5.64464	5.8263549999999995	6.00807	6.0063e-4	5.16173e-4	0.0226059	0.0203753
chr10	101364939	101365035	4679439	0	-	0.354167	(0.35,0.378]	chr10	431839	2	EXON_SMALL	EXON_SMALL	RNU2-59P	ENSG00000222414.1	ENST00000410482.1	snRNA	snRNA	snRNA	snRNA	3	296	2	4.81013	5.823985	6.83784	1.27274e-6	6.65331e-10	7.31684e-4	5.41199e-6
chr1	40731461	40731561	82763	0	+	0.58	(0.57,1]	chr1	10736	73	INTRON	INTRON	NFYC	ENSG00000066136.21	ENST00000467203.5:ENST00000424419.6:ENST00000427410.6:ENST00000447388.8:ENST00000425457.6:ENST00000453631.5:ENST00000456393.6:ENST00000372654.5:ENST00000534399.5:ENST00000372653.5:ENST00000372669.8:ENST00000372652.5:ENST00000372651.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	62	2	5.45864	5.8214500000000005	6.18426	1.90577e-5	6.15547e-8	0.00354138	1.07836e-4
chr8	129532659	129532759	4060609	0	-	0.4	(0.378,0.408]	chr8	369648	221	INTRON	INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1:ENST00000676273.1:ENST00000667643.1:ENST00000668791.1:ENST00000663716.1:ENST00000663572.1:ENST00000676148.1:ENST00000667962.1:ENST00000674877.1:ENST00000675316.1:ENST00000674656.1:ENST00000446592.7:ENST00000667341.1:ENST00000675186.1:ENST00000652971.1:ENST00000661447.1:ENST00000674863.1:ENST00000675498.1:ENST00000675527.1:ENST00000676108.1:ENST00000657647.1:ENST00000675589.1:ENST00000675913.1:ENST00000675109.1:ENST00000671632.1:ENST00000671311.1:ENST00000676099.1:ENST00000660652.1:ENST00000675522.1:ENST00000675183.1:ENST00000658861.1:ENST00000663991.1:ENST00000675044.1:ENST00000675435.1:ENST00000674639.1:ENST00000676069.1:ENST00000675532.1:ENST00000674762.1:ENST00000523151.6:ENST00000675948.1:ENST00000665364.1:ENST00000657251.1:ENST00000675166.1:ENST00000674883.1:ENST00000675867.1:ENST00000674580.1:ENST00000675393.1:ENST00000520048.1:ENST00000674906.1:ENST00000676030.1:ENST00000670588.1:ENST00000675072.1:ENST00000664936.1:ENST00000652914.1:ENST00000657069.1	lncRNA	lncRNA	lncRNA	lncRNA	0	79	2	5.78373	5.82076	5.85779	1.89312e-4	2.83884e-5	0.012565	0.00422437
chr13	19682904	19683003	5551934	0	-	0.464646	(0.44,0.476]	chr13	530672	39	INTRON	INTRON	PSPC1	ENSG00000121390.19	ENST00000471658.5:ENST00000492741.5:ENST00000635562.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	0	79	2	5.63338	5.81906	6.00474	7.86121e-5	4.73674e-5	0.00738014	0.00593269
chr12	19158440	19158540	5088558	0	+	0.4	(0.378,0.408]	chr12	480740	256	INTRON	INTRON	PLEKHA5	ENSG00000052126.15	ENST00000429027.7:ENST00000540972.5:ENST00000299275.10:ENST00000539256.5:ENST00000538714.5:ENST00000535357.5:ENST00000538034.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	79	2	5.78318	5.8180250000000004	5.85287	1.39037e-4	4.21479e-5	0.0107072	0.0052571
chr6	111266263	111266357	2939848	0	+	0.37234	(0.35,0.378]	chr6	276921	4	CDS	CDS:UTR3:EXON_MRNA	MFSD4B	ENSG00000173214.7	ENST00000672303.1:ENST00000671876.2:ENST00000672750.1:ENST00000672191.1:ENST00000368847.5:ENST00000672554.1:ENST00000673024.1:ENST00000671883.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	80	2	5.79808	5.815849999999999	5.83362	2.04087e-4	5.23926e-5	0.0129859	0.00590498
chr21	46204139	46204239	7470616	0	-	0.56	(0.515,0.57]	chr21	761464	75	INTRON	INTRON	LSS	ENSG00000160285.15	ENST00000356396.8:ENST00000397728.8:ENST00000457828.6:ENST00000522411.5	protein_coding	protein_coding	protein_coding	protein_coding	0	75	2	5.56617	5.809145	6.05212	5.44229e-5	1.09838e-5	0.00603408	0.00262193
chr15	65557888	65557985	6046913	0	+	0.319588	(0.28,0.32]	chr15	575827	6	INTRON	INTRON	HACD3	ENSG00000074696.13	ENST00000562901.5:ENST00000261875.10:ENST00000442729.6:ENST00000565299.5:ENST00000568793.5:ENST00000566074.5:ENST00000566511.5:ENST00000569894.5:ENST00000562832.1	protein_coding	protein_coding	protein_coding	protein_coding	0	83	2	5.77646	5.808775000000001	5.84109	6.44045e-4	1.04715e-4	0.0231685	0.00863456
chr3	41211863	41211963	1403148	0	+	0.36	(0.35,0.378]	chr3	147417	111	INTRON	INTRON	CTNNB1	ENSG00000168036.18	ENST00000643541.1:ENST00000426215.5:ENST00000645210.1:ENST00000646381.1:ENST00000405570.6:ENST00000642248.1:ENST00000433400.6:ENST00000642992.1:ENST00000431914.6:ENST00000642836.1:ENST00000396185.8:ENST00000642986.1:ENST00000644678.1:ENST00000643031.1:ENST00000396183.7:ENST00000645982.1:ENST00000453024.6:ENST00000645900.1:ENST00000647264.1:ENST00000646174.1:ENST00000643992.1:ENST00000642886.1:ENST00000647390.1:ENST00000643052.1:ENST00000488914.2:ENST00000349496.11:ENST00000642426.1:ENST00000646074.1:ENST00000645276.1:ENST00000644138.1:ENST00000646116.1:ENST00000644873.1:ENST00000643865.1:ENST00000644867.1:ENST00000646725.1:ENST00000645493.1:ENST00000646369.1:ENST00000643977.1:ENST00000647413.1:ENST00000644524.1:ENST00000645305.1:ENST00000643297.1:ENST00000450969.6:ENST00000642315.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	80	2	5.57564	5.8068	6.03796	5.93654e-4	1.46604e-5	0.0225024	0.00286704
chr9	130733854	130733954	4214063	0	+	0.46	(0.44,0.476]	chr9	386427	190	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000393293.4	protein_coding	protein_coding	protein_coding	protein_coding	1	161	2	4.53562	5.8024249999999995	7.06923	2.98409e-6	1.02222e-7	0.0011135	1.43918e-4
chr18	13667706	13667804	6951266	0	-	0.459184	(0.44,0.476]	chr18	687656	6	INTRON	INTRON	FAM210A	ENSG00000177150.13	ENST00000322247.7:ENST00000651643.1:ENST00000402563.5:ENST00000585785.1:ENST00000588475.1:ENST00000589346.1:ENST00000592976.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	77	2	5.73383	5.80187	5.86991	1.70474e-4	2.27008e-5	0.0119761	0.00372337
chr10	11555707	11555807	4555504	0	-	0.31	(0.28,0.32]	chr10	420447	236	INTRON	INTRON	USP6NL	ENSG00000148429.15	ENST00000609104.6:ENST00000379237.6	protein_coding	protein_coding	protein_coding	protein_coding	0	85	2	5.39235	5.79905	6.20575	0.0024844	1.70903e-5	0.0446195	0.00314439
chr4	174289471	174289571	2082635	0	+	0.25	[0,0.28]	chr4	205805	35	INTRON	INTRON	CEP44	ENSG00000164118.13	ENST00000505124.5:ENST00000457424.6:ENST00000396791.7:ENST00000503780.6:ENST00000514712.5:ENST00000515299.5:ENST00000503053.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	85	2	5.73276	5.79509	5.85742	0.00156565	2.14364e-4	0.0360583	0.0128514
chr17	40144300	40144400	6609166	0	+	0.33	(0.32,0.35]	chr17	643675	23	INTRON	INTRON	CASC3	ENSG00000108349.17	ENST00000418132.7:ENST00000264645.12:ENST00000581849.1:ENST00000584997.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	81	2	5.54944	5.79453	6.03962	9.42646e-4	2.28019e-5	0.0280811	0.0037274
chr2	218594662	218594759	1018465	0	+	0.371134	(0.35,0.378]	chr2	108484	5	UTR3	UTR3:EXON_MRNA	CNOT9	ENSG00000144580.14	ENST00000542068.5:ENST00000273064.11:ENST00000418808.1	protein_coding	protein_coding	protein_coding	protein_coding	0	79	2	5.72151	5.794245	5.86698	1.76496e-4	7.69755e-5	0.01216	0.00735438
chr16	58610796	58610896	6496192	0	-	0.42	(0.408,0.44]	chr16	628638	109	INTRON	INTRON	CNOT1	ENSG00000125107.19	ENST00000317147.10:ENST00000569240.5:ENST00000567188.5:ENST00000441024.6:ENST00000565605.5:ENST00000564557.1:ENST00000569916.1:ENST00000565697.1:ENST00000569020.5:ENST00000568158.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	77	2	5.61068	5.793150000000001	5.97562	3.21002e-4	1.24941e-5	0.0165409	0.00263887
chr14	21510732	21510814	5836647	0	-	0.47561	(0.44,0.476]	chr14	554877	3	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	METTL3	ENSG00000165819.12	ENST00000298717.9:ENST00000537163.5:ENST00000543235.5:ENST00000544248.1:ENST00000536201.5:ENST00000542054.5:ENST00000538267.5:ENST00000367606.7:ENST00000545319.1:ENST00000545788.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	77	2	5.67559	5.7923	5.90901	7.5486e-5	6.34721e-5	0.00777227	0.00658818
chr12	104287931	104288030	5210015	0	+	0.292929	(0.28,0.32]	chr12	493194	1	INTRON	INTRON	TXNRD1	ENSG00000198431.17	ENST00000525566.6:ENST00000526266.5:ENST00000503506.6:ENST00000526691.5:ENST00000531691.5:ENST00000526390.5:ENST00000531689.5:ENST00000529546.5:ENST00000529751.1:ENST00000526207.1:ENST00000528079.6:ENST00000526580.5:ENST00000529784.5:ENST00000524698.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	85	2	5.44583	5.7895	6.13317	5.8721e-4	1.54938e-4	0.0220073	0.0113252
chr2	111431607	111431707	1211166	0	-	0.47	(0.44,0.476]	chr2	128899	8	INTRON	INTRON	MIR4435-2HG	ENSG00000172965.17	ENST00000645030.2:ENST00000642191.1:ENST00000673798.1:ENST00000645051.2:ENST00000673649.1:ENST00000669658.1:ENST00000669917.1:ENST00000661559.1:ENST00000653687.1:ENST00000667670.1:ENST00000609220.2:ENST00000656760.1:ENST00000609902.6:ENST00000666683.1:ENST00000674070.1:ENST00000662335.1:ENST00000664422.1:ENST00000673775.1:ENST00000674092.1:ENST00000673958.1:ENST00000658936.1:ENST00000662635.1:ENST00000666204.1:ENST00000659458.1:ENST00000664443.1:ENST00000670295.1:ENST00000661655.1:ENST00000666390.1:ENST00000659079.1:ENST00000660442.1:ENST00000664009.1:ENST00000439362.6:ENST00000654473.1:ENST00000664999.1:ENST00000673728.1:ENST00000659791.1:ENST00000666144.1:ENST00000659933.1:ENST00000670715.1:ENST00000653568.1:ENST00000643013.1:ENST00000673866.1:ENST00000443467.6:ENST00000669875.1:ENST00000673653.1:ENST00000673988.1:ENST00000661945.1:ENST00000669515.1:ENST00000431385.6:ENST00000656416.1:ENST00000674037.1:ENST00000432818.5:ENST00000674013.1:ENST00000444301.5:ENST00000673964.1:ENST00000673845.1:ENST00000673756.1:ENST00000673960.1:ENST00000673804.1:ENST00000673632.1:ENST00000453478.2:ENST00000673937.1:ENST00000673654.1:ENST00000409569.2:ENST00000674087.1:ENST00000419736.5:ENST00000673840.1:ENST00000674045.1:ENST00000673821.1:ENST00000643766.1:ENST00000308604.5:ENST00000674026.1:ENST00000604981.5:ENST00000603310.5:ENST00000673894.1:ENST00000442293.5:ENST00000441075.1	lncRNA	lncRNA	lncRNA	lncRNA	0	77	2	5.53439	5.7877600000000005	6.04113	4.05863e-4	8.64562e-6	0.0185763	0.00211124
chr21	43790062	43790162	7413615	0	+	0.42	(0.408,0.44]	chr21	755604	3	SS5_PROX	SS5_PROX:INTRON	RRP1	ENSG00000160214.13	ENST00000475534.5:ENST00000483896.5:ENST00000497547.2:ENST00000492638.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	80	2	5.40208	5.787115	6.17215	2.37882e-4	2.28416e-5	0.0136195	0.00389868
chr6	75647378	75647466	2905410	0	+	0.352273	(0.35,0.378]	chr6	274526	2	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	SENP6	ENSG00000112701.18	ENST00000370010.6:ENST00000447266.7:ENST00000327284.12:ENST00000483859.6:ENST00000424947.6:ENST00000436928.7:ENST00000485497.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	79	2	5.53471	5.786334999999999	6.03796	6.96925e-4	1.46604e-5	0.024224	0.00286704
chr9	128227949	128228047	4203308	0	+	0.479592	(0.476,0.515]	chr9	384064	14	INTRON	INTRON	DNM1	ENSG00000106976.21	ENST00000372923.8:ENST00000341179.11:ENST00000475805.5:ENST00000393594.7:ENST00000628346.2:ENST00000486160.3:ENST00000627543.2:ENST00000627061.2:ENST00000634267.2:ENST00000637999.1:ENST00000441149.6:ENST00000482638.6:ENST00000637317.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	78	2	5.49434	5.78365	6.07296	1.62782e-4	2.96173e-5	0.0109774	0.00451038
chr9	137668881	137668980	4223979	0	+	0.565657	(0.515,0.57]	chr9	388187	10	INTRON	INTRON	EHMT1	ENSG00000181090.21	ENST00000462484.5:ENST00000371394.6:ENST00000630754.2:ENST00000460843.6:ENST00000626216.2:ENST00000629335.2:ENST00000637335.1:ENST00000636376.1:ENST00000637655.1:ENST00000636027.1:ENST00000492232.5:ENST00000460486.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	73	2	5.61249	5.78331	5.95413	4.24748e-5	1.89589e-5	0.00526976	0.00354138
chr11	31504073	31504173	4939186	0	-	0.27	[0,0.28]	chr11	462601	155	INTRON	INTRON	IMMP1L	ENSG00000148950.11	ENST00000532287.6:ENST00000534812.5:ENST00000526776.5:ENST00000278200.5:ENST00000648582.1:ENST00000533642.1:ENST00000527184.5:ENST00000528161.5:ENST00000532624.5:ENST00000529749.5:ENST00000530023.5:ENST00000531693.1:ENST00000532668.1:ENST00000533921.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	84	2	5.69866	5.778040000000001	5.85742	0.00175225	2.14364e-4	0.0376491	0.0128514
chr14	30605004	30605104	5674863	0	+	0.53	(0.515,0.57]	chr14	540576	1	SS3_PROX	SS3_PROX:INTRON	G2E3	ENSG00000092140.16	ENST00000206595.11:ENST00000438909.6:ENST00000544007.5:ENST00000648008.1:ENST00000553504.5:ENST00000552515.5:ENST00000548934.1:ENST00000547638.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	72	2	5.74316	5.777675	5.81219	4.05175e-5	2.06122e-5	0.00539487	0.00352433
chr6	157897597	157897697	3016512	0	+	0.52	(0.515,0.57]	chr6	281391	2	INTRON	INTRON	SNX9	ENSG00000130340.17	ENST00000680863.1:ENST00000679814.1:ENST00000680464.1:ENST00000681186.1:ENST00000679732.1:ENST00000681183.1:ENST00000681534.1:ENST00000681651.1:ENST00000680089.1:ENST00000680078.1:ENST00000680974.1:ENST00000680095.1:ENST00000680015.1:ENST00000681138.1:ENST00000392185.8:ENST00000679790.1:ENST00000680495.1:ENST00000679691.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	72	2	5.7009	5.774955	5.84901	3.33916e-5	2.61423e-5	0.00487221	0.00402177
chr2	38353866	38353966	1099110	0	-	0.5	(0.476,0.515]	chr2	117863	4	SS5_PROX	SS5_PROX:INTRON	ATL2	ENSG00000119787.14	ENST00000378954.9:ENST00000406122.5:ENST00000405384.6:ENST00000402054.5:ENST00000419554.6:ENST00000651368.1:ENST00000452935.6:ENST00000449130.5:ENST00000443098.5:ENST00000456736.5:ENST00000472097.1:ENST00000451483.1:ENST00000486927.1:ENST00000416222.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	78	2	5.35995	5.774825	6.1897	7.54256e-4	3.83137e-6	0.0251179	0.00129308
chr1	96728781	96728881	168011	0	+	0.27	[0,0.28]	chr1	18215	48	INTRON	INTRON	PTBP2	ENSG00000117569.19	ENST00000482253.5:ENST00000675735.1:ENST00000609116.5:ENST00000674951.1:ENST00000675080.1:ENST00000426398.3:ENST00000460706.5:ENST00000370197.5:ENST00000370198.5:ENST00000476419.5:ENST00000676292.1:ENST00000676096.1:ENST00000675365.1:ENST00000674579.1:ENST00000675401.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	84	2	5.7191	5.774795	5.83049	0.00112548	3.82357e-4	0.0306963	0.0176949
chr15	28245480	28245580	6123272	0	-	0.43	(0.408,0.44]	chr15	583286	2	SS5_PROX	SS5_PROX:INTRON	HERC2	ENSG00000128731.18	ENST00000261609.13	protein_coding	protein_coding	protein_coding	protein_coding	0	77	2	5.4394	5.7721350000000005	6.10487	6.50925e-4	5.90186e-6	0.0232863	0.00170648
chr7	32533900	32533999	3303618	0	+	0.343434	(0.32,0.35]	chr7	306761	24	EXON_LNCRNA	EXON_LNCRNA:INTRON	AVL9	ENSG00000105778.20	ENST00000485228.1:ENST00000318709.9:ENST00000459629.1:ENST00000409301.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	79	2	5.7686	5.7709	5.7732	3.96807e-4	8.9843e-5	0.0185763	0.0079464
chr9	91874761	91874861	4284510	0	-	0.51	(0.476,0.515]	chr9	393909	986	INTRON	INTRON	ROR2	ENSG00000169071.15	ENST00000375715.5:ENST00000375708.4:ENST00000550066.5:ENST00000495386.5:ENST00000546883.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	77	2	5.49434	5.76869	6.04304	1.62782e-4	3.44951e-5	0.0109774	0.00495154
chr16	2225417	2225516	6277722	0	+	0.464646	(0.44,0.476]	chr16	600294	11	INTRON	INTRON	E4F1	ENSG00000167967.16	ENST00000565090.5:ENST00000301727.9:ENST00000564139.5:ENST00000562589.5:ENST00000565413.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	76	2	5.58989	5.76576	5.94163	9.76499e-5	6.45088e-5	0.00830626	0.00711194
chr2	53909974	53910074	1119942	0	-	0.31	(0.28,0.32]	chr2	119989	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	PSME4	ENSG00000068878.15	ENST00000404125.6:ENST00000389993.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	82	2	5.4357	5.764915	6.09413	0.00215368	3.04445e-5	0.0417866	0.00440486
chr11	43395263	43395363	4776916	0	+	0.5	(0.476,0.515]	chr11	441712	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	TTC17:ENSG00000254577	ENSG00000052841.15:ENSG00000254577.1	ENST00000039989.9:ENST00000299240.10:ENST00000394183.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	3	244	2	4.13962	5.760795	7.38197	9.89344e-8	9.80114e-9	1.37407e-4	2.7046e-5
chr3	101371107	101371207	1757149	0	-	0.48	(0.476,0.515]	chr3	178305	27	INTRON	INTRON	SENP7	ENSG00000138468.16	ENST00000394095.7:ENST00000314261.11:ENST00000394094.6:ENST00000394091.5:ENST00000348610.3	protein_coding	protein_coding	protein_coding	protein_coding	0	75	2	5.67114	5.7601700000000005	5.8492	8.94204e-5	6.83906e-5	0.00844245	0.00684369
chr15	50600487	50600586	6172399	0	-	0.292929	(0.28,0.32]	chr15	588282	8	INTRON	INTRON	TRPM7	ENSG00000092439.16	ENST00000646667.1:ENST00000560955.5	protein_coding	protein_coding	protein_coding	protein_coding	0	84	2	5.25388	5.756175	6.25847	0.00385849	1.29215e-5	0.0542786	0.00266147
chr7	152356394	152356494	3680497	0	-	0.5	(0.476,0.515]	chr7	341654	118	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000682301.1:ENST00000452749.2:ENST00000680867.1:ENST00000683800.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	76	2	5.40769	5.753765	6.09984	6.23078e-4	6.54592e-6	0.0229151	0.00180994
chr19	5649599	5649683	7005570	0	+	0.309524	(0.28,0.32]	chr19	694983	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SAFB	ENSG00000160633.13	ENST00000589863.5:ENST00000588852.2:ENST00000292123.9:ENST00000592224.5:ENST00000586934.5:ENST00000454510.5:ENST00000592707.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	239	2	4.58337	5.753735000000001	6.9241	3.72987e-6	1.25777e-7	0.00138787	1.60844e-4
chr19	631255	631353	7110063	0	-	0.602041	(0.57,1]	chr19	713933	7	INTRON	INTRON	POLRMT	ENSG00000099821.14	ENST00000588649.7:ENST00000592863.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	107	2	5.14604	5.753165	6.36029	1.3694e-8	4.58687e-9	3.96402e-5	1.61446e-5
chr10	3134782	3134882	4382226	0	+	0.45	(0.44,0.476]	chr10	404174	2	SS5_PROX	SS5_PROX:INTRON	PFKP	ENSG00000067057.18	ENST00000381125.9:ENST00000381075.7:ENST00000678206.1:ENST00000678089.1:ENST00000676796.1:ENST00000415005.6:ENST00000381072.5:ENST00000433193.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	76	2	5.49878	5.75176	6.00474	1.52058e-4	4.73674e-5	0.0106137	0.00593269
chr5	39070411	39070511	2605608	0	-	0.49	(0.476,0.515]	chr5	247896	489	INTRON	INTRON	RICTOR	ENSG00000164327.13	ENST00000357387.8:ENST00000511516.5:ENST00000296782.9:ENST00000510711.5:ENST00000513566.1:ENST00000514735.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	74	2	5.74155	5.746790000000001	5.75203	1.47804e-4	4.51048e-5	0.0111067	0.0054649
chr7	105163597	105163696	3601640	0	-	0.393939	(0.378,0.408]	chr7	336108	26	INTRON	INTRON	SRPK2	ENSG00000135250.17	ENST00000393651.8:ENST00000357311.7:ENST00000485455.1:ENST00000489828.5:ENST00000476117.1:ENST00000482897.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	75	2	5.74438	5.746124999999999	5.74787	2.21531e-4	5.15539e-5	0.0136064	0.00585477
chr14	30709215	30709311	5675936	0	+	0.21875	[0,0.28]	chr14	540741	13	EXON_MRNA	EXON_MRNA:INTRON	SCFD1	ENSG00000092108.22	ENST00000678760.1:ENST00000677690.1:ENST00000678124.1:ENST00000678716.1:ENST00000678402.1:ENST00000679153.1:ENST00000678516.1:ENST00000678802.1:ENST00000679096.1:ENST00000679102.1:ENST00000678475.1:ENST00000676509.1:ENST00000676750.1:ENST00000679165.1:ENST00000676658.1:ENST00000678399.1:ENST00000678185.1:ENST00000677413.1:ENST00000555259.5:ENST00000554437.6:ENST00000676834.1:ENST00000678858.1:ENST00000553693.6:ENST00000676914.1:ENST00000676465.1:ENST00000676812.1:ENST00000678669.1:ENST00000676520.1:ENST00000676876.1:ENST00000677617.1:ENST00000676954.1:ENST00000677456.1:ENST00000678735.1:ENST00000679342.1:ENST00000678637.1:ENST00000677176.1:ENST00000557076.6:ENST00000677637.1:ENST00000677974.1:ENST00000458591.7:ENST00000484733.6:ENST00000556768.5:ENST00000544052.6:ENST00000463622.6:ENST00000676674.1:ENST00000677340.1:ENST00000311943.11:ENST00000679075.1:ENST00000678396.1:ENST00000676473.1:ENST00000396629.6:ENST00000678579.1:ENST00000678104.1:ENST00000676817.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	82	2	5.73276	5.743855	5.75495	0.00156565	3.2999e-4	0.0360583	0.0161352
chr1	186324766	186324866	603870	0	-	0.41	(0.408,0.44]	chr1	71988	5	INTRON	INTRON	TPR	ENSG00000047410.14	ENST00000367478.9	protein_coding	protein_coding	protein_coding	protein_coding	0	74	2	5.72699	5.74202	5.75705	1.93446e-4	4.13252e-5	0.0127226	0.00519938
chr5	39023335	39023435	2605137	0	-	0.3	(0.28,0.32]	chr5	247896	18	INTRON	INTRON	RICTOR	ENSG00000164327.13	ENST00000357387.8:ENST00000511516.5:ENST00000296782.9:ENST00000510711.5:ENST00000513566.1:ENST00000514735.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	80	2	5.47779	5.741075	6.00436	0.00187048	4.77464e-5	0.0390476	0.00563886
chr7	105038299	105038384	3374860	0	+	0.235294	[0,0.28]	chr7	315860	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	KMT2E	ENSG00000005483.22	ENST00000622386.2:ENST00000257745.9:ENST00000334884.9:ENST00000311117.8:ENST00000478990.5:ENST00000480368.5:ENST00000495267.5:ENST00000476671.5:ENST00000667857.1:ENST00000474203.5:ENST00000482560.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	84	2	5.3489	5.73809	6.12728	0.00514751	6.40034e-5	0.062965	0.00661396
chr9	83706300	83706400	4273066	0	-	0.34	(0.32,0.35]	chr9	392981	198	INTRON	INTRON	UBQLN1	ENSG00000135018.14	ENST00000376395.9:ENST00000257468.11:ENST00000529923.1	protein_coding	protein_coding	protein_coding	protein_coding	0	78	2	5.46642	5.737410000000001	6.0084	0.00127669	2.68752e-5	0.0326395	0.00408175
chr1	21764675	21764775	396685	0	-	0.43	(0.408,0.44]	chr1	47345	65	INTRON	INTRON	USP48	ENSG00000090686.16	ENST00000400301.5:ENST00000308271.14:ENST00000529637.5:ENST00000421625.6:ENST00000527823.5:ENST00000532737.1:ENST00000489108.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	255	2	4.61599	5.736190000000001	6.85639	4.71601e-7	1.95414e-9	3.94833e-4	1.23872e-5
chr14	37129583	37129683	5877583	0	-	0.29	(0.28,0.32]	chr14	558013	2542	INTRON	INTRON	SLC25A21	ENSG00000183032.12	ENST00000331299.6:ENST00000555449.5:ENST00000557611.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	79	2	5.69571	5.736085	5.77646	6.44045e-4	2.03259e-4	0.0231685	0.0124395
chr11	117216878	117216978	5045139	0	-	0.33	(0.32,0.35]	chr11	475556	80	EXON_MRNA	EXON_MRNA:INTRON	PCSK7	ENSG00000160613.15	ENST00000320934.8:ENST00000676339.1:ENST00000524507.6:ENST00000534529.5:ENST00000527037.5:ENST00000533135.1:ENST00000528973.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	77	2	5.65222	5.72978	5.80734	3.45606e-4	1.55757e-4	0.0173197	0.0106835
chr1	2241328	2241427	2296	0	+	0.414141	(0.408,0.44]	chr1	553	83	INTRON	INTRON	SKI	ENSG00000157933.10	ENST00000378536.5:ENST00000508416.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	161	2	4.58287	5.72959	6.87631	5.4058e-6	3.53255e-8	0.00172973	7.47714e-5
chr20	38430459	38430528	7342263	0	-	0.492754	(0.476,0.515]	chr20	748319	1	SS5_PROX	SS5_PROX:INTRON	SNHG17	ENSG00000196756.14	ENST00000654008.2:ENST00000658076.1:ENST00000662982.2:ENST00000456953.7:ENST00000654183.2:ENST00000663540.2:ENST00000651115.2:ENST00000660885.2:ENST00000662213.1:ENST00000665233.2:ENST00000666268.2:ENST00000665735.1:ENST00000660558.2:ENST00000691280.1:ENST00000658488.2:ENST00000688336.1:ENST00000668054.2:ENST00000690441.1:ENST00000655520.2:ENST00000687490.1:ENST00000664626.1:ENST00000658051.1:ENST00000668042.1:ENST00000686971.1:ENST00000663187.1:ENST00000657868.1:ENST00000663534.1:ENST00000689917.1:ENST00000664073.2:ENST00000653697.1:ENST00000656320.1:ENST00000686814.1:ENST00000417578.7:ENST00000654853.1:ENST00000436764.7:ENST00000668482.2:ENST00000671249.1:ENST00000655692.1:ENST00000693250.1:ENST00000691368.1:ENST00000693227.1:ENST00000690361.1:ENST00000670051.1:ENST00000667912.1:ENST00000693665.1:ENST00000665181.1:ENST00000687532.1:ENST00000691386.1:ENST00000693684.1:ENST00000666331.1:ENST00000669480.1:ENST00000658905.1:ENST00000661252.1:ENST00000669137.1:ENST00000688133.1:ENST00000689414.1:ENST00000691314.1:ENST00000669033.1:ENST00000686145.1:ENST00000653938.1:ENST00000663784.1:ENST00000665003.1:ENST00000656023.1:ENST00000692262.1:ENST00000414142.5:ENST00000670958.1:ENST00000657216.2:ENST00000664636.1:ENST00000657843.1:ENST00000423536.6:ENST00000666419.1:ENST00000413755.5	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	1	157	2	4.30769	5.72836	7.14903	1.28603e-5	4.87899e-8	0.00266147	8.81115e-5
chr12	113164685	113164785	5417990	0	-	0.52	(0.515,0.57]	chr12	517741	4	SS3_PROX	SS3_PROX:INTRON	DDX54	ENSG00000123064.13	ENST00000306014.10:ENST00000314045.11:ENST00000546898.1:ENST00000550016.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	71	2	5.46881	5.728175	5.98754	9.03271e-5	1.57707e-5	0.00795396	0.00318411
chr2	87455386	87455472	825916	0	+	0.476744	(0.476,0.515]	chr2	92399	3	EXON_LNCRNA	EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CYTOR	ENSG00000222041.12	ENST00000642796.1:ENST00000643589.1:ENST00000642451.1:ENST00000646386.1:ENST00000644478.1:ENST00000409139.6:ENST00000331944.10:ENST00000644125.1:ENST00000643743.1:ENST00000644577.1	lncRNA	lncRNA	lncRNA	lncRNA	0	73	2	5.71215	5.726850000000001	5.74155	1.47804e-4	5.54639e-5	0.0111067	0.00609037
chr4	78872255	78872327	1982363	0	+	0.222222	[0,0.28]	chr4	198541	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	BMP2K	ENSG00000138756.19	ENST00000389010.7:ENST00000502613.3:ENST00000502871.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	81	2	5.66373	5.726825	5.78992	0.00196371	2.85302e-4	0.0401678	0.0150568
chr13	41319504	41319599	5474299	0	+	0.442105	(0.44,0.476]	chr13	524441	2	INTRON	INTRON	NAA16	ENSG00000172766.19	ENST00000379406.8:ENST00000403412.7:ENST00000476980.5:ENST00000464857.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	73	2	5.65733	5.72631	5.79529	2.3957e-4	3.3977e-5	0.0142132	0.0046443
chr14	102619615	102619715	5822803	0	+	0.46	(0.44,0.476]	chr14	552490	259	INTRON	INTRON	RCOR1	ENSG00000089902.10	ENST00000262241.7	protein_coding	protein_coding	protein_coding	protein_coding	0	73	2	5.65733	5.72631	5.79529	2.3957e-4	3.3977e-5	0.0142132	0.0046443
chr3	197119930	197120030	1901703	0	-	0.47	(0.44,0.476]	chr3	190570	4	SS3_PROX	SS3_PROX:INTRON	DLG1	ENSG00000075711.21	ENST00000667157.1:ENST00000346964.6:ENST00000656428.1:ENST00000663148.1:ENST00000655488.1:ENST00000357674.9:ENST00000671185.1:ENST00000658701.1:ENST00000667104.1:ENST00000661336.1:ENST00000669565.1:ENST00000670455.1:ENST00000656087.1:ENST00000670366.1:ENST00000653583.1:ENST00000653795.1:ENST00000671246.1:ENST00000661453.1:ENST00000665728.1:ENST00000664564.1:ENST00000653331.1:ENST00000660432.1:ENST00000660898.1:ENST00000657381.1:ENST00000659221.1:ENST00000654737.1:ENST00000669332.1:ENST00000659716.1:ENST00000660553.1:ENST00000664991.1:ENST00000419354.5:ENST00000661440.1:ENST00000667971.1:ENST00000670935.1:ENST00000668578.1:ENST00000666007.1:ENST00000661229.1:ENST00000660237.1:ENST00000657098.1:ENST00000661013.1:ENST00000436682.6:ENST00000452595.5:ENST00000662727.1:ENST00000422288.6:ENST00000448528.6:ENST00000443183.5:ENST00000656944.1:ENST00000392382.6:ENST00000450955.5:ENST00000658155.1:ENST00000669714.1:ENST00000654733.1:ENST00000469073.2:ENST00000419227.5:ENST00000392381.7:ENST00000471733.5:ENST00000419553.6:ENST00000447466.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	73	2	5.6175	5.725289999999999	5.83308	2.84938e-4	2.77366e-5	0.015495	0.00415129
chr7	98186005	98186098	3358404	0	+	0.430108	(0.408,0.44]	chr7	313275	5	INTRON	INTRON	LMTK2	ENSG00000164715.6	ENST00000297293.6	protein_coding	protein_coding	protein_coding	protein_coding	0	73	2	5.68926	5.723155	5.75705	2.2853e-4	4.13252e-5	0.0138641	0.00519938
chr19	538444	538544	6991786	0	+	0.44	(0.408,0.44]	chr19	692123	9	INTRON	INTRON	CDC34	ENSG00000099804.9	ENST00000215574.9:ENST00000586283.6:ENST00000607527.5:ENST00000606065.3:ENST00000606400.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	73	2	5.71717	5.72208	5.72699	1.93446e-4	5.09043e-5	0.0127226	0.00585477
chr10	15840925	15841025	4564975	0	-	0.3	(0.28,0.32]	chr10	421245	1	SS5_PROX	SS5_PROX:INTRON	MINDY3	ENSG00000148481.14	ENST00000477891.1:ENST00000277632.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	78	2	5.67157	5.7209	5.77023	9.48957e-4	1.45293e-4	0.0281755	0.0104769
chr18	802328	802427	6940607	0	-	0.515152	(0.476,0.515]	chr18	686527	43	INTRON	INTRON	YES1	ENSG00000176105.14	ENST00000584307.5:ENST00000314574.5:ENST00000577611.1:ENST00000581960.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	259	2	4.1904	5.720745	7.25109	1.89244e-7	2.30255e-9	2.16148e-4	1.31476e-5
chr20	37518412	37518511	7340702	0	-	0.444444	(0.44,0.476]	chr20	748112	11	UTR3	UTR3:EXON_MRNA:INTRON	BLCAP	ENSG00000166619.15	ENST00000467603.1:ENST00000373537.7:ENST00000397137.5:ENST00000414542.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	149	2	4.66361	5.719575000000001	6.77554	1.27655e-6	6.57827e-7	6.61338e-4	4.79925e-4
chr2	241657225	241657323	1055674	0	+	0.489796	(0.476,0.515]	chr2	112516	15	INTRON	INTRON	ATG4B	ENSG00000168397.17	ENST00000405546.7:ENST00000402096.5:ENST00000494465.5:ENST00000483778.5:ENST00000404914.8:ENST00000468018.5:ENST00000482507.5:ENST00000493618.5:ENST00000425239.5:ENST00000400771.7:ENST00000430617.6:ENST00000344376.9:ENST00000429899.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	80	2	5.12072	5.719110000000001	6.3175	8.42139e-4	8.0696e-6	0.0263691	0.00214775
chr19	938828	938927	6992618	0	+	0.313131	(0.28,0.32]	chr19	692392	57	INTRON	INTRON	ARID3A	ENSG00000116017.11	ENST00000263620.8:ENST00000587532.5:ENST00000457152.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	78	2	5.55845	5.71685	5.87525	0.00141854	8.91612e-5	0.0340865	0.00793468
chr3	6572867	6572966	1356971	0	+	0.222222	[0,0.28]	chr3	142512	142	INTRON	INTRON	ENSG00000189229	ENSG00000189229.12	ENST00000433639.1:ENST00000655754.1:ENST00000653839.1:ENST00000662846.1:ENST00000414438.2:ENST00000658468.1:ENST00000669512.1:ENST00000667028.1:ENST00000655541.1:ENST00000668643.1:ENST00000671568.1:ENST00000671036.1:ENST00000669798.1:ENST00000655753.1:ENST00000655856.1:ENST00000658398.1:ENST00000661518.1:ENST00000661279.1:ENST00000655495.1:ENST00000663041.1:ENST00000659827.1:ENST00000667716.1:ENST00000662508.1:ENST00000668416.1:ENST00000658133.1:ENST00000342990.4:ENST00000660054.1:ENST00000671370.1	lncRNA	lncRNA	lncRNA	lncRNA	1	185	2	4.37974	5.715815	7.05189	2.59829e-5	7.41155e-6	0.00401359	0.00205092
chr4	169010182	169010275	2294683	0	-	0.419355	(0.408,0.44]	chr4	222093	2	UTR5	UTR5:EXON_MRNA	CBR4	ENSG00000145439.12	ENST00000510042.5:ENST00000306193.8:ENST00000504480.5:ENST00000506808.1:ENST00000507752.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	198	2	4.47307	5.714085	6.9551	2.54707e-7	8.49997e-8	2.695e-4	1.25346e-4
chr8	105538566	105538666	3839448	0	+	0.31	(0.28,0.32]	chr8	354067	92	INTRON	INTRON	ZFPM2	ENSG00000169946.14	ENST00000407775.7:ENST00000520492.5:ENST00000520027.5:ENST00000524235.5:ENST00000511341.6:ENST00000517361.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	79	2	5.39235	5.71363	6.03491	0.0024844	4.10265e-5	0.0446195	0.00519615
chr10	28553942	28554042	4414013	0	+	0.55	(0.515,0.57]	chr10	407148	155	INTRON	INTRON	WAC	ENSG00000095787.24	ENST00000680735.1:ENST00000375664.8:ENST00000428935.6:ENST00000651598.1:ENST00000628285.3:ENST00000681112.1:ENST00000679570.1:ENST00000375646.5:ENST00000354911.9:ENST00000347934.8:ENST00000420266.6:ENST00000651885.1:ENST00000651441.1:ENST00000679398.1:ENST00000424454.5:ENST00000442148.6:ENST00000448193.5:ENST00000414108.6:ENST00000679428.1:ENST00000439676.5:ENST00000345541.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	144	2	4.41118	5.71296	7.01474	7.5736e-6	2.91811e-9	0.00206677	1.56744e-5
chr1	100906851	100906908	174445	0	+	0.421053	(0.408,0.44]	chr1	18931	1	CDS	CDS:EXON_MRNA	SLC30A7	ENSG00000162695.12	ENST00000370112.8:ENST00000357650.9	protein_coding	protein_coding	protein_coding	protein_coding	0	73	2	5.48416	5.71279	5.94142	5.43528e-4	1.51568e-5	0.0215026	0.00293131
chr1	23041808	23041908	43982	0	+	0.23	[0,0.28]	chr1	5258	108	INTRON	INTRON	KDM1A	ENSG00000004487.18	ENST00000692214.1:ENST00000686934.1:ENST00000689853.1:ENST00000465864.2:ENST00000691256.1:ENST00000688122.1:ENST00000692056.1:ENST00000692853.1:ENST00000689366.1:ENST00000686270.1:ENST00000685102.1:ENST00000690627.1:ENST00000686771.1:ENST00000692209.1:ENST00000686339.1:ENST00000691813.1:ENST00000693156.1:ENST00000688235.1:ENST00000692975.1:ENST00000687202.1:ENST00000691682.1:ENST00000691404.1:ENST00000691694.1:ENST00000688680.1:ENST00000356634.7:ENST00000400181.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	81	2	5.43428	5.70895	5.98362	0.00400834	1.23405e-4	0.0551303	0.00949832
chr2	218285063	218285162	1328641	0	-	0.393939	(0.378,0.408]	chr2	139090	4	INTRON	INTRON	TMBIM1	ENSG00000135926.15	ENST00000258412.8:ENST00000444881.5:ENST00000396809.6:ENST00000445635.5:ENST00000437694.6:ENST00000466012.5:ENST00000429501.5:ENST00000495113.5:ENST00000418569.5:ENST00000440422.5:ENST00000444183.5:ENST00000453776.5:ENST00000444000.5:ENST00000453281.5:ENST00000451181.5:ENST00000434015.2:ENST00000413976.1:ENST00000420341.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	73	2	5.70451	5.70781	5.71111	2.59738e-4	6.32265e-5	0.0148796	0.00658818
chr8	98394510	98394610	3995821	0	-	0.24	[0,0.28]	chr8	365989	31	INTRON	INTRON	STK3	ENSG00000104375.17	ENST00000649151.1	protein_coding	processed_transcript	protein_coding	processed_transcript	0	87	2	5.05748	5.706004999999999	6.35453	0.0113653	2.13329e-5	0.0886611	0.00357657
chr2	148692833	148692932	892236	0	+	0.191919	[0,0.28]	chr2	98796	1	INTRON	INTRON	EPC2	ENSG00000135999.12	ENST00000457184.5:ENST00000258484.11:ENST00000397424.2	protein_coding	protein_coding	protein_coding	protein_coding	0	80	2	5.64464	5.70536	5.76608	0.00140074	5.16173e-4	0.0340865	0.0203753
chr19	12535159	12535258	7139793	0	-	0.484848	(0.476,0.515]	chr19	720329	23	INTRON	INTRON	ZNF564	ENSG00000249709.8	ENST00000339282.12:ENST00000427105.1:ENST00000596193.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	72	2	5.5421	5.703775	5.86545	3.56777e-4	2.46461e-5	0.0175154	0.00389532
chr3	49030357	49030451	1691590	0	-	0.414894	(0.408,0.44]	chr3	173116	8	UTR3	UTR3:EXON_MRNA	QRICH1	ENSG00000198218.11	ENST00000395443.7:ENST00000498392.1:ENST00000357496.6:ENST00000424300.5:ENST00000489642.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	152	2	4.37185	5.702170000000001	7.03249	8.42461e-6	1.55679e-7	0.00209893	1.9247e-4
chr13	29573138	29573238	5568159	0	-	0.29	(0.28,0.32]	chr13	532223	189	INTRON	INTRON	SLC7A1	ENSG00000139514.13	ENST00000380752.10:ENST00000450494.1	protein_coding	protein_coding	protein_coding	protein_coding	0	77	2	5.59715	5.70162	5.80609	0.00123856	1.23223e-4	0.0322669	0.00949625
chr16	30988279	30988375	6340040	0	+	0.53125	(0.515,0.57]	chr16	608120	2	UTR3	UTR3:EXON_MRNA	HSD3B7	ENSG00000099377.14	ENST00000297679.10:ENST00000262520.10	protein_coding	protein_coding	protein_coding	protein_coding	0	69	2	5.51831	5.70161	5.88491	6.99834e-5	2.75856e-5	0.00692586	0.00430942
chr2	10149530	10149630	690998	0	+	0.35	(0.32,0.35]	chr2	81105	35	INTRON	INTRON	RRM2	ENSG00000171848.16	ENST00000641498.1:ENST00000646978.1:ENST00000381786.7	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	2	221	2	3.88241	5.69914	7.51587	8.72772e-6	4.80983e-8	0.00212305	8.75593e-5
chr2	126662952	126663051	862077	0	+	0.515152	(0.476,0.515]	chr2	96613	43	INTRON	INTRON	GYPC	ENSG00000136732.16	ENST00000459787.1:ENST00000259254.9:ENST00000409836.3:ENST00000356887.12	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	148	2	4.52384	5.69747	6.8711	3.3232e-6	3.01123e-7	0.00118585	2.98561e-4
chr6	35875737	35875837	3088363	0	-	0.32	(0.28,0.32]	chr6	288860	10	INTRON	INTRON	SRPK1	ENSG00000096063.16	ENST00000373825.7:ENST00000423325.6:ENST00000346162.10:ENST00000361690.7:ENST00000510290.5:ENST00000373821.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	77	2	5.51868	5.6969650000000005	5.87525	0.00162747	8.91612e-5	0.0367966	0.00793468
chr9	5001895	5001995	4095989	0	+	0.3	(0.28,0.32]	chr9	373235	155	INTRON	INTRON	JAK2	ENSG00000096968.14	ENST00000636127.1:ENST00000476574.5:ENST00000381652.4	protein_coding	protein_coding	protein_coding	protein_coding	0	77	2	5.51868	5.6969650000000005	5.87525	0.00162747	8.91612e-5	0.0367966	0.00793468
chr6	151000850	151000949	2999234	0	+	0.414141	(0.408,0.44]	chr6	280599	153	INTRON	INTRON	MTHFD1L	ENSG00000120254.16	ENST00000611279.4:ENST00000367321.8:ENST00000618312.4:ENST00000478643.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	72	2	5.59045	5.69504	5.79963	1.39468e-4	9.6776e-5	0.0107072	0.00826486
chr12	56668415	56668512	5335876	0	-	0.453608	(0.44,0.476]	chr12	510168	18	INTRON	INTRON	PTGES3	ENSG00000110958.16	ENST00000537473.2:ENST00000614328.4:ENST00000262033.11:ENST00000414274.7:ENST00000436399.6:ENST00000448157.6:ENST00000456859.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	72	2	5.54506	5.693265	5.84147	1.21665e-4	1.03947e-4	0.00942499	0.00915599
chr2	197909285	197909385	970149	0	+	0.32	(0.28,0.32]	chr2	104858	986	INTRON	INTRON	PLCL1	ENSG00000115896.16	ENST00000428675.6:ENST00000435320.1:ENST00000487695.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	77	2	5.57617	5.692985	5.8098	5.67703e-4	3.41866e-4	0.0220072	0.0164909
chr1	150554831	150554928	223205	0	+	0.484536	(0.476,0.515]	chr1	25279	2	SS5_PROX	SS5_PROX:INTRON	ADAMTSL4	ENSG00000143382.16	ENST00000369039.9:ENST00000271643.9:ENST00000369041.9:ENST00000674043.1:ENST00000674058.1:ENST00000369038.6	protein_coding	protein_coding	protein_coding	protein_coding	0	73	2	5.39709	5.689185	5.98128	2.55871e-4	4.70386e-5	0.0142249	0.00593131
chr20	58986298	58986389	7291284	0	+	0.395604	(0.378,0.408]	chr20	741879	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NELFCD	ENSG00000101158.15	ENST00000602795.6:ENST00000492016.5:ENST00000471621.5:ENST00000652272.2:ENST00000460601.5:ENST00000482747.1:ENST00000464363.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	72	2	5.67338	5.688945	5.70451	3.05145e-4	6.32265e-5	0.0161236	0.00658818
chr10	74068275	74068375	4455206	0	+	0.36	(0.35,0.378]	chr10	411401	45	INTRON	INTRON	VCL	ENSG00000035403.18	ENST00000623461.3:ENST00000372755.7:ENST00000624354.3:ENST00000211998.10:ENST00000478896.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	73	2	5.65417	5.68784	5.72151	4.33402e-4	7.69755e-5	0.0190829	0.00735438
chr4	186482970	186483070	2308542	0	-	0.49	(0.476,0.515]	chr4	223310	504	INTRON	INTRON	F11-AS1	ENSG00000251165.6	ENST00000505103.5:ENST00000657917.1:ENST00000508110.5:ENST00000508287.1	lncRNA	lncRNA	lncRNA	lncRNA	0	75	2	5.15143	5.68494	6.21845	0.00166579	3.2177e-6	0.0369207	0.0011644
chr3	158118102	158118202	1538354	0	+	0.47	(0.44,0.476]	chr3	160248	71	INTRON	INTRON	RSRC1	ENSG00000174891.14	ENST00000480820.5:ENST00000494002.5:ENST00000295930.7:ENST00000471994.5:ENST00000683733.1:ENST00000682221.1:ENST00000683831.1:ENST00000683516.1:ENST00000482822.3:ENST00000476899.6:ENST00000464171.5:ENST00000611884.5:ENST00000682164.1:ENST00000684604.1:ENST00000683899.1:ENST00000682500.1:ENST00000684683.1:ENST00000684512.1:ENST00000683394.1:ENST00000684156.1:ENST00000312179.10:ENST00000475278.6:ENST00000480119.5:ENST00000468344.5:ENST00000471911.5:ENST00000683137.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	71	2	5.53439	5.683735	5.83308	4.05863e-4	2.77366e-5	0.0185763	0.00415129
chr3	177173013	177173112	1872204	0	-	0.484848	(0.476,0.515]	chr3	187438	17	INTRON	INTRON	TBL1XR1	ENSG00000177565.18	ENST00000457928.7:ENST00000430069.5:ENST00000673974.1:ENST00000352800.10:ENST00000422442.6:ENST00000428970.5:ENST00000424913.5:ENST00000437738.5:ENST00000431421.5:ENST00000635794.1:ENST00000630796.2:ENST00000450267.5:ENST00000630833.2:ENST00000431674.5:ENST00000422066.5:ENST00000443315.5:ENST00000627825.2:ENST00000427349.5:ENST00000413084.5:ENST00000637137.1:ENST00000491623.2:ENST00000637544.1:ENST00000636187.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	72	2	5.35995	5.68198	6.00401	7.54256e-4	1.13973e-5	0.0251179	0.00249332
chr21	46422524	46422624	7422241	0	+	0.42	(0.408,0.44]	chr21	756885	4	SS5_PROX	SS5_PROX:INTRON	PCNT	ENSG00000160299.18	ENST00000695558.1:ENST00000359568.10:ENST00000480896.5:ENST00000695527.1:ENST00000695528.1:ENST00000695529.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	71	2	5.52758	5.68061	5.83364	4.54953e-4	2.74563e-5	0.0196892	0.00414215
chr16	8922254	8922346	6442330	0	-	0.51087	(0.476,0.515]	chr16	620557	6	INTRON	INTRON	USP7	ENSG00000187555.16	ENST00000673704.1:ENST00000344836.9:ENST00000563961.5:ENST00000381886.8:ENST00000565455.5:ENST00000563085.5:ENST00000542333.5:ENST00000566004.5:ENST00000569230.5:ENST00000566273.5:ENST00000564117.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	71	2	5.54061	5.677405	5.8142	1.30462e-4	1.0551e-4	0.00983066	0.00920724
chr19	43587747	43587847	7187434	0	-	0.53	(0.515,0.57]	chr19	727431	35	UTR3	UTR3:EXON_MRNA:INTRON	IRGQ	ENSG00000167378.10	ENST00000422989.6:ENST00000602269.2:ENST00000601520.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	67	2	5.65738	5.676565	5.69575	7.34886e-5	3.32659e-5	0.00767614	0.00461719
chr3	47959093	47959193	1686195	0	-	0.32	(0.28,0.32]	chr3	172245	273	INTRON	INTRON	MAP4	ENSG00000047849.22	ENST00000683076.1:ENST00000395734.7:ENST00000426837.6:ENST00000360240.10:ENST00000423088.5:ENST00000633710.1	protein_coding	protein_coding	protein_coding	protein_coding	0	76	2	5.4357	5.672165	5.90863	0.00215368	7.60626e-5	0.0417866	0.00731806
chr17	50395288	50395388	6795132	0	-	0.5	(0.476,0.515]	chr17	670758	3	SS3_PROX	SS3_PROX:INTRON	LRRC59	ENSG00000108829.10	ENST00000225972.8	protein_coding	protein_coding	protein_coding	protein_coding	0	73	2	5.29281	5.667925	6.04304	4.07635e-4	3.44951e-5	0.0181306	0.00495154
chr9	135877732	135877832	4371969	0	-	0.52	(0.515,0.57]	chr9	402479	108	INTRON	INTRON	CAMSAP1	ENSG00000130559.19	ENST00000389532.9:ENST00000312405.10:ENST00000409386.3:ENST00000468150.1:ENST00000460094.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	67	2	5.43019	5.665485	5.90078	2.60422e-4	8.21951e-6	0.0148796	0.00206883
chr14	55064002	55064098	5725500	0	+	0.395833	(0.378,0.408]	chr14	543392	1	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	MAPK1IP1L:ENSG00000289523	ENSG00000168175.15:ENSG00000289523.1	ENST00000395468.9:ENST00000622254.1:ENST00000553976.1:ENST00000689806.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA:processed_transcript	0	76	2	5.06412	5.665355	6.26659	0.0030522	2.70944e-6	0.0493883	0.00105261
chr2	111829997	111830095	1214320	0	-	0.428571	(0.408,0.44]	chr2	129124	38	INTRON	INTRON	ANAPC1	ENSG00000153107.13	ENST00000427997.5:ENST00000341068.8	protein_coding	protein_coding	protein_coding	protein_coding	0	73	2	5.29779	5.66311	6.02843	3.80479e-4	4.71156e-5	0.0176313	0.00593131
chr8	129570121	129570221	4060988	0	-	0.55	(0.515,0.57]	chr8	369672	130	INTRON	INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1:ENST00000676273.1:ENST00000667643.1:ENST00000668791.1:ENST00000663716.1:ENST00000663572.1:ENST00000676148.1:ENST00000667962.1:ENST00000674877.1:ENST00000675316.1:ENST00000674656.1:ENST00000446592.7:ENST00000667341.1:ENST00000675186.1:ENST00000652971.1:ENST00000661447.1:ENST00000674863.1:ENST00000675498.1:ENST00000675527.1:ENST00000676108.1:ENST00000657647.1:ENST00000675589.1:ENST00000675913.1:ENST00000675109.1:ENST00000671632.1:ENST00000671311.1:ENST00000676099.1:ENST00000660652.1:ENST00000675522.1:ENST00000675044.1:ENST00000675435.1:ENST00000674639.1:ENST00000676069.1:ENST00000675532.1:ENST00000674762.1:ENST00000523151.6:ENST00000675948.1:ENST00000665364.1:ENST00000657251.1:ENST00000675166.1:ENST00000674883.1:ENST00000675867.1:ENST00000674580.1:ENST00000675393.1:ENST00000520048.1:ENST00000674906.1:ENST00000676030.1:ENST00000670588.1:ENST00000675072.1:ENST00000664936.1:ENST00000652914.1:ENST00000657069.1:ENST00000674882.1	lncRNA	lncRNA	lncRNA	lncRNA	1	131	2	4.70505	5.662125	6.6192	5.88804e-7	3.31621e-7	4.17661e-4	3.12285e-4
chr22	41839852	41839952	7526065	0	+	0.29	(0.28,0.32]	chr22	769353	61	INTRON	INTRON	SREBF2	ENSG00000198911.12	ENST00000612482.4:ENST00000361204.9:ENST00000424354.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	75	2	5.47779	5.65944	5.84109	0.00187048	1.04715e-4	0.0390476	0.00863456
chr11	86002307	86002400	5014160	0	-	0.322581	(0.32,0.35]	chr11	472964	8	INTRON	INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000630913.2:ENST00000528398.5:ENST00000356360.9:ENST00000534412.5:ENST00000533350.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	73	2	5.54944	5.65902	5.7686	9.42646e-4	8.9843e-5	0.0280811	0.0079464
chr7	65752063	65752163	3322741	0	+	0.34	(0.32,0.35]	chr7	308948	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	CCT6P1	ENSG00000228409.7	ENST00000686363.1:ENST00000688735.1:ENST00000689814.1:ENST00000690196.1:ENST00000690636.1:ENST00000687809.1:ENST00000688944.1:ENST00000691983.1:ENST00000688184.1:ENST00000688478.1:ENST00000443108.7:ENST00000686689.1:ENST00000689785.1:ENST00000685316.1:ENST00000442266.3:ENST00000685398.1:ENST00000434500.6	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	73	2	5.65222	5.658939999999999	5.66566	6.06695e-4	1.55757e-4	0.0226059	0.0106835
chr7	24601783	24601883	3291000	0	+	0.34	(0.32,0.35]	chr7	305717	42	INTRON	INTRON	PALS2	ENSG00000105926.16	ENST00000432190.5:ENST00000409761.5:ENST00000222644.10:ENST00000396475.6:ENST00000430180.5:ENST00000426450.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	73	2	5.50853	5.65696	5.80539	0.0010959399999999999	7.5134e-5	0.0304174	0.00725287
chr7	848867	848943	3268806	0	+	0.289474	(0.28,0.32]	chr7	303586	3	SS5_PROX	SS5_PROX:INTRON	SUN1	ENSG00000164828.18	ENST00000452783.6:ENST00000389574.7:ENST00000401592.6:ENST00000413171.6:ENST00000405266.5:ENST00000340926.7:ENST00000425407.6:ENST00000450881.5:ENST00000419312.5:ENST00000429178.5:ENST00000433212.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	178	2	4.27229	5.65565	7.03901	7.17184e-5	1.25735e-7	0.00761173	1.60844e-4
chr7	10768085	10768185	3484461	0	-	0.42	(0.408,0.44]	chr7	325772	2062	INTRON	INTRON	MGC4859	ENSG00000283117.1	ENST00000634803.1	lncRNA	lncRNA	lncRNA	lncRNA	0	70	2	5.4394	5.654935	5.87047	6.50925e-4	2.24671e-5	0.0232863	0.0036973
chr6	88833974	88834073	3157833	0	-	0.343434	(0.32,0.35]	chr6	294197	320	INTRON	INTRON	RNGTT	ENSG00000111880.16	ENST00000369485.9:ENST00000369475.7:ENST00000627296.1:ENST00000538899.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	74	2	5.4346	5.65394	5.87328	4.09682e-4	2.6344e-4	0.0181306	0.0149561
chr2	182948149	182948248	1285100	0	-	0.181818	[0,0.28]	chr2	135311	11	INTRON	INTRON	NCKAP1	ENSG00000061676.15	ENST00000361354.9:ENST00000360982.2	protein_coding	protein_coding	protein_coding	protein_coding	1	180	2	4.86643	5.65237	6.43831	1.13087e-4	1.71233e-6	0.00956778	7.91024e-4
chr22	19395991	19396089	7554062	0	-	0.540816	(0.515,0.57]	chr22	772280	11	INTRON	INTRON	HIRA:C22orf39	ENSG00000100084.14:ENSG00000242259.9	ENST00000263208.5:ENST00000340170.8:ENST00000509549.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	67	2	5.41755	5.65123	5.88491	1.1703e-4	2.75856e-5	0.00929802	0.00430942
chr6	34886053	34886150	3086318	0	-	0.536082	(0.515,0.57]	chr6	288722	9	INTRON	INTRON	TAF11	ENSG00000064995.19	ENST00000361288.9:ENST00000650109.1:ENST00000693593.1:ENST00000420584.3:ENST00000689560.1:ENST00000685682.1:ENST00000686190.1:ENST00000687970.1:ENST00000688059.1:ENST00000690161.1:ENST00000693481.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	67	2	5.41755	5.65123	5.88491	1.1703e-4	2.75856e-5	0.00929802	0.00430942
chr1	35388180	35388256	69501	0	+	0.315789	(0.28,0.32]	chr1	8789	2	INTRON	INTRON	ZMYM4	ENSG00000146463.12	ENST00000314607.11:ENST00000457946.1	protein_coding	protein_coding	protein_coding	protein_coding	0	75	2	5.4906	5.6502	5.8098	5.67703e-4	4.89126e-4	0.0220072	0.0199693
chr2	131091319	131091418	1229072	0	-	0.414141	(0.408,0.44]	chr2	130994	83	INTRON	INTRON	FAM168B	ENSG00000152102.18	ENST00000389915.4:ENST00000409185.5	protein_coding	protein_coding	protein_coding	protein_coding	0	70	2	5.3932	5.64979	5.90638	7.81492e-4	1.84308e-5	0.0257168	0.00328489
chr3	168090249	168090349	1854883	0	-	0.33	(0.32,0.35]	chr3	186419	415	INTRON	INTRON	GOLIM4	ENSG00000173905.9	ENST00000470487.6:ENST00000309027.4	protein_coding	protein_coding	protein_coding	protein_coding	0	73	2	5.42305	5.649665000000001	5.87628	0.00149027	5.28936e-5	0.035	0.00592337
chr10	17693412	17693512	4399764	0	+	0.36	(0.35,0.378]	chr10	406185	1	SS5_PROX	SS5_PROX:INTRON	STAM	ENSG00000136738.15	ENST00000377524.8:ENST00000377500.1	protein_coding	protein_coding	protein_coding	protein_coding	0	72	2	5.35828	5.649134999999999	5.93999	0.00135282	2.49725e-5	0.0336321	0.00392542
chr5	616211	616310	2313414	0	+	0.282828	(0.28,0.32]	chr5	223834	34	INTRON	INTRON	CEP72	ENSG00000112877.8	ENST00000264935.6	protein_coding	protein_coding	protein_coding	protein_coding	0	77	2	5.30253	5.64881	5.99509	0.0010319	2.74247e-4	0.0294094	0.0151711
chr16	69648382	69648481	6380840	0	+	0.252525	[0,0.28]	chr16	613192	4	INTRON	INTRON	NFAT5	ENSG00000102908.22	ENST00000426654.6:ENST00000349945.7:ENST00000354436.6:ENST00000627621.3:ENST00000650987.1:ENST00000567990.5:ENST00000567239.5:ENST00000393742.7:ENST00000565301.2:ENST00000566899.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	77	2	5.43428	5.64585	5.85742	0.00400834	2.14364e-4	0.0551303	0.0128514
chr13	51947164	51947262	5596251	0	-	0.387755	(0.378,0.408]	chr13	534915	8	EXON_MRNA	EXON_MRNA:INTRON	ATP7B	ENSG00000123191.16	ENST00000242839.10:ENST00000344297.9:ENST00000674147.1:ENST00000634810.1:ENST00000673867.1:ENST00000448424.7:ENST00000634620.1:ENST00000634296.1:ENST00000400370.8:ENST00000634844.1:ENST00000673772.1:ENST00000634308.1:ENST00000418097.7:ENST00000400366.6:ENST00000674126.1:ENST00000635406.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	70	2	5.57782	5.644465	5.71111	2.59738e-4	1.18586e-4	0.0148796	0.00930884
chr7	139416312	139416406	3438167	0	+	0.329787	(0.32,0.35]	chr7	320378	3	EXON_LNCRNA	EXON_LNCRNA:INTRON	LUC7L2:FMC1-LUC7L2	ENSG00000146963.18:ENSG00000269955.2	ENST00000541170.7:ENST00000541515.3:ENST00000619796.4:ENST00000354926.9:ENST00000456182.5:ENST00000263545.7:ENST00000498518.1:ENST00000482860.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	167	2	4.3902	5.64431	6.89842	2.90857e-5	1.31534e-7	0.00448686	1.63937e-4
chr13	83056415	83056514	5633811	0	-	0.313131	(0.28,0.32]	chr13	536804	2775	INTRON	INTRON	ENSG00000286385	ENSG00000286385.1	ENST00000663739.1	lncRNA	lncRNA	lncRNA	lncRNA	0	76	2	5.35189	5.64391	5.93593	8.52844e-4	3.47635e-4	0.0264928	0.017378
chr14	61738873	61738967	5745158	0	+	0.468085	(0.44,0.476]	chr14	545330	1	INTRON	INTRON	HIF1A	ENSG00000100644.17	ENST00000337138.9:ENST00000394997.5:ENST00000323441.10:ENST00000539097.2:ENST00000557538.5:ENST00000555014.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	69	2	5.58989	5.6429849999999995	5.69608	2.01872e-4	9.76499e-5	0.0129814	0.00830626
chr17	17260788	17260881	6736227	0	-	0.301075	(0.28,0.32]	chr17	660965	2	SS3_PROX	SS3_PROX:INTRON	COPS3	ENSG00000141030.13	ENST00000268717.10:ENST00000539941.6:ENST00000578317.5:ENST00000439936.6:ENST00000486810.5:ENST00000577210.5:ENST00000417352.5:ENST00000584216.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	74	2	5.57617	5.641780000000001	5.70739	8.32651e-4	3.41866e-4	0.0266389	0.0164909
chr2	151435680	151435780	893472	0	+	0.25	[0,0.28]	chr2	98925	1	SS5_PROX	SS5_PROX:INTRON	RIF1	ENSG00000080345.18	ENST00000453091.6:ENST00000428287.6:ENST00000444746.7:ENST00000243326.9:ENST00000414861.6:ENST00000430328.6	protein_coding	protein_coding	protein_coding	protein_coding	0	77	2	5.39222	5.64112	5.89002	0.00453865	1.86278e-4	0.0595107	0.0119078
chr1	23783596	23783694	44832	0	+	0.459184	(0.44,0.476]	chr1	5454	33	INTRON	INTRON	PITHD1	ENSG00000057757.10	ENST00000246151.9:ENST00000415372.1	protein_coding	protein_coding	protein_coding	protein_coding	0	73	2	5.08659	5.64038	6.19417	0.00226401	3.48092e-6	0.0425438	0.00120947
chr1	77595353	77595453	492584	0	-	0.33	(0.32,0.35]	chr1	58292	103	INTRON	INTRON	ZZZ3	ENSG00000036549.13	ENST00000370801.8:ENST00000481346.5:ENST00000476275.5:ENST00000370798.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	73	2	5.33218	5.638015	5.94385	0.00204346	3.75519e-5	0.04086	0.00490694
chr7	127770890	127770990	3403599	0	+	0.35	(0.32,0.35]	chr7	318134	491	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000468166.5:ENST00000465900.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	73	2	5.33218	5.638015	5.94385	0.00204346	3.75519e-5	0.04086	0.00490694
chr17	35597234	35597333	6599634	0	+	0.363636	(0.35,0.378]	chr17	642232	28	INTRON	INTRON	AP2B1	ENSG00000006125.18	ENST00000589774.5:ENST00000616784.4:ENST00000621914.4:ENST00000620039.4:ENST00000616681.4:ENST00000621668.4:ENST00000610402.5:ENST00000612035.4:ENST00000591610.5:ENST00000590538.5:ENST00000614600.4:ENST00000590432.5:ENST00000612116.5:ENST00000618940.4:ENST00000588093.1:ENST00000592167.5:ENST00000593014.3:ENST00000628168.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	71	2	5.40445	5.637615	5.87078	0.00114224	3.6006e-5	0.0307966	0.00481059
chr5	54095838	54095938	2618765	0	-	0.12	[0,0.28]	chr5	248841	199	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	76	2	5.56611	5.632385	5.69866	0.00175225	7.02173e-4	0.0376491	0.0241881
chr9	131202813	131202912	4216430	0	+	0.40404	(0.378,0.408]	chr9	386673	7	INTRON	INTRON	NUP214	ENSG00000126883.19	ENST00000695497.1:ENST00000695498.1:ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000524578.6:ENST00000453861.6:ENST00000483497.6:ENST00000695500.1:ENST00000650694.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	69	2	5.59482	5.629160000000001	5.6635	4.23783e-4	7.77533e-5	0.0189958	0.00735438
chr2	108567511	108567610	846177	0	+	0.40404	(0.378,0.408]	chr2	94661	326	INTRON	INTRON	LIMS1	ENSG00000169756.17	ENST00000695516.1:ENST00000544547.6:ENST00000695517.1	protein_coding	protein_coding	protein_coding	protein_coding	0	70	2	5.43892	5.628815	5.81871	2.28412e-4	1.62088e-4	0.0133228	0.0116382
chr19	45710723	45710819	7192981	0	-	0.354167	(0.35,0.378]	chr19	728452	2	UTR3	UTR3:EXON_MRNA	FBXO46	ENSG00000177051.6	ENST00000317683.4	protein_coding	protein_coding	protein_coding	protein_coding	0	70	2	5.53471	5.6281099999999995	5.72151	6.96925e-4	7.69755e-5	0.024224	0.00735438
chr1	213004832	213004932	634982	0	-	0.35	(0.32,0.35]	chr1	75010	4	SS5_PROX	SS5_PROX:INTRON	ANGEL2	ENSG00000174606.14	ENST00000366962.8:ENST00000360506.6:ENST00000535388.2	protein_coding	protein_coding	protein_coding	protein_coding	0	72	2	5.48083	5.627015	5.7732	3.96807e-4	3.35843e-4	0.0185763	0.0162819
chr19	1361432	1361532	6994767	0	+	0.36	(0.35,0.378]	chr19	693059	4	SS5_PROX	SS5_PROX:INTRON	PWWP3A	ENSG00000160953.17	ENST00000591337.7:ENST00000591433.6:ENST00000591806.6:ENST00000652273.1:ENST00000415183.7:ENST00000587460.6:ENST00000627377.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	70	2	5.49258	5.6264400000000006	5.7603	8.19894e-4	6.3427e-5	0.0264086	0.00658818
chr2	182945238	182945337	1285070	0	-	0.424242	(0.408,0.44]	chr2	135307	27	INTRON	INTRON	NCKAP1	ENSG00000061676.15	ENST00000361354.9:ENST00000360982.2:ENST00000478449.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	69	2	5.34548	5.62593	5.90638	9.40657e-4	1.84308e-5	0.0280776	0.00328489
chr1	12311053	12311153	29065	0	+	0.47	(0.44,0.476]	chr1	3525	2	SS3_PROX	SS3_PROX:INTRON	VPS13D	ENSG00000048707.15	ENST00000620676.6:ENST00000613099.4:ENST00000011700.10:ENST00000646917.1:ENST00000460333.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	68	2	5.49097	5.62373	5.75649	4.8612e-4	4.17314e-5	0.0203841	0.00523306
chr5	32423094	32423194	2599112	0	-	0.46	(0.44,0.476]	chr5	246966	26	INTRON	INTRON	ZFR	ENSG00000056097.16	ENST00000265069.13:ENST00000505366.1:ENST00000505204.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	68	2	5.58989	5.623609999999999	5.65733	2.3957e-4	9.76499e-5	0.0142132	0.00830626
chr15	64347959	64348059	6204749	0	-	0.43	(0.408,0.44]	chr15	591775	2	SS5_PROX	SS5_PROX:INTRON	CSNK1G1:ENSG00000259316	ENSG00000169118.18:ENSG00000259316.12	ENST00000303052.13:ENST00000607537.6:ENST00000634654.1:ENST00000634811.1:ENST00000606793.3:ENST00000634251.1:ENST00000634847.3:ENST00000635529.1:ENST00000634318.1:ENST00000635160.1:ENST00000635704.1:ENST00000634529.1:ENST00000635511.1:ENST00000635605.1:ENST00000635593.1:ENST00000634259.2:ENST00000560278.2:ENST00000635413.1:ENST00000634538.1:ENST00000635320.1:ENST00000558783.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	68	2	5.61068	5.622310000000001	5.63394	3.21002e-4	7.78928e-5	0.0165409	0.00735438
chr7	129621698	129621798	3412221	0	+	0.23	[0,0.28]	chr7	319009	95	INTRON	INTRON	NRF1	ENSG00000106459.15	ENST00000393232.6:ENST00000477428.5:ENST00000454688.5:ENST00000223190.8:ENST00000311967.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	75	2	5.55356	5.617955	5.68235	0.00278704	4.43841e-4	0.0469265	0.0190552
chr9	65716306	65716406	4132231	0	+	0.44	(0.408,0.44]	chr9	376527	70	INTRON	INTRON	CBWD5	ENSG00000147996.17	ENST00000377392.9:ENST00000377389.5:ENST00000476161.5:ENST00000497250.5:ENST00000480229.5:ENST00000430059.6:ENST00000382405.8:ENST00000429800.6:ENST00000486221.5:ENST00000465474.5:ENST00000377395.8:ENST00000476797.5:ENST00000489273.1:ENST00000485088.5:ENST00000468066.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	68	2	5.54561	5.617435	5.68926	2.2853e-4	1.20601e-4	0.0138641	0.00938389
chr11	118451291	118451391	4872269	0	+	0.49	(0.476,0.515]	chr11	454987	14	INTRON	INTRON	ENSG00000285827:KMT2A	ENSG00000285827.1:ENSG00000118058.24	ENST00000648261.1:ENST00000389506.10:ENST00000534358.8:ENST00000533790.3:ENST00000527869.7:ENST00000649690.2:ENST00000691053.1:ENST00000531904.6:ENST00000649699.1:ENST00000648029.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	68	2	5.35995	5.6127	5.86545	7.54256e-4	2.46461e-5	0.0251179	0.00389532
chr16	66617358	66617457	6501114	0	-	0.323232	(0.32,0.35]	chr16	628951	1	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	CMTM4	ENSG00000183723.13	ENST00000394106.7:ENST00000330687.8:ENST00000581487.1:ENST00000561680.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	71	2	5.48083	5.6095299999999995	5.73823	4.5635e-4	3.35843e-4	0.0196892	0.0162819
chr2	233846056	233846135	1343774	0	-	0.35443	(0.35,0.378]	chr2	140839	4	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	HJURP	ENSG00000123485.12	ENST00000432087.5:ENST00000441687.5:ENST00000411486.7:ENST00000414924.5:ENST00000454020.1:ENST00000453122.1:ENST00000373395.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	70	2	5.31058	5.6081900000000005	5.9058	0.00160599	2.99525e-5	0.0364977	0.0043593700000000004
chr19	41283458	41283557	7071242	0	+	0.525253	(0.515,0.57]	chr19	706761	18	INTRON	INTRON	HNRNPUL1	ENSG00000105323.18	ENST00000352456.7:ENST00000595018.5:ENST00000599719.5:ENST00000392006.8:ENST00000378215.8:ENST00000595196.5:ENST00000617774.1:ENST00000602130.5:ENST00000593587.5:ENST00000263367.7:ENST00000599614.5:ENST00000600596.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	64	2	5.43019	5.6072	5.78421	2.60422e-4	1.63043e-5	0.0148796	0.00304426
chr14	101792957	101793056	5818809	0	+	0.494949	(0.476,0.515]	chr14	551829	32	INTRON	INTRON	PPP2R5C	ENSG00000078304.20	ENST00000694906.1:ENST00000422945.6:ENST00000554442.5:ENST00000556068.5:ENST00000328724.9:ENST00000554504.1:ENST00000553890.1:ENST00000553554.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	67	2	5.5421	5.6066199999999995	5.67114	3.56777e-4	6.83906e-5	0.0175154	0.00684369
chr16	15150850	15150949	6450964	0	-	0.515152	(0.476,0.515]	chr16	621698	120	INTRON	INTRON	PKD1P6	ENSG00000250251.6	ENST00000343738.10	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	0	68	2	5.39709	5.605645	5.8142	2.55871e-4	1.0551e-4	0.0142249	0.00920724
chr7	152038513	152038613	3449639	0	+	0.51	(0.476,0.515]	chr7	322435	104	INTRON	INTRON	GALNT11	ENSG00000178234.13	ENST00000430044.7:ENST00000482812.1:ENST00000431668.1:ENST00000446096.5:ENST00000447778.5:ENST00000423337.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	67	2	5.49867	5.60541	5.71215	4.28561e-4	5.54639e-5	0.0189958	0.00609037
chr17	2601572	2601671	6547513	0	+	0.484848	(0.476,0.515]	chr17	635203	68	INTRON	INTRON	PAFAH1B1	ENSG00000007168.14	ENST00000576586.5:ENST00000397195.10:ENST00000676201.1:ENST00000575477.5:ENST00000675621.1:ENST00000676353.1:ENST00000674717.1:ENST00000675202.1:ENST00000675764.1:ENST00000674608.1:ENST00000676077.1:ENST00000676098.1:ENST00000572915.6:ENST00000570400.1:ENST00000571289.1:ENST00000675430.1:ENST00000675331.1:ENST00000676188.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	67	2	5.58545	5.605335	5.62522	2.4907e-4	1.04881e-4	0.0145812	0.00863456
chr20	41089106	41089205	7274115	0	+	0.494949	(0.476,0.515]	chr20	739249	42	INTRON	INTRON	TOP1	ENSG00000198900.7	ENST00000361337.3:ENST00000681113.1:ENST00000681058.1:ENST00000681392.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	67	2	5.58545	5.605335	5.62522	2.4907e-4	1.04881e-4	0.0145812	0.00863456
chr21	6498028	6498128	7425458	0	-	0.31	(0.28,0.32]	chr21	757482	12	INTRON	INTRON	ENSG00000275895	ENSG00000275895.7	ENST00000610664.5:ENST00000639996.1:ENST00000620065.4:ENST00000624739.1:ENST00000619610.2:ENST00000636315.1:ENST00000636177.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	74	2	5.30253	5.603975	5.90542	0.0010319	3.92169e-4	0.0294094	0.0184748
chr3	44438989	44439089	1676332	0	-	0.45	(0.44,0.476]	chr3	171106	74	UTR3	UTR3:EXON_MRNA:INTRON	C3orf86:ZNF445	ENSG00000225873.4:ENSG00000185219.18	ENST00000636468.1:ENST00000637612.1:ENST00000396077.8	protein_coding	protein_coding	protein_coding:transcribed_unitary_pseudogene	protein_coding:processed_transcript	0	67	2	5.49097	5.60379	5.71661	4.8612e-4	5.13947e-5	0.0203841	0.00585477
chr3	179370884	179370983	1567171	0	+	0.282828	(0.28,0.32]	chr3	162115	6	EXON_LNCRNA	EXON_LNCRNA:INTRON	MFN1:ENSG00000289574	ENSG00000171109.19:ENSG00000289574.1	ENST00000471841.6:ENST00000357390.8:ENST00000263969.9:ENST00000474903.1:ENST00000686574.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:nonsense_mediated_decay:lncRNA	0	72	2	5.4357	5.602964999999999	5.77023	0.00215368	1.45293e-4	0.0417866	0.0104769
chr2	202274413	202274512	984997	0	+	0.525253	(0.515,0.57]	chr2	105703	81	INTRON	INTRON	NOP58	ENSG00000055044.11	ENST00000488403.5:ENST00000426814.5:ENST00000264279.10:ENST00000472050.5:ENST00000492740.5:ENST00000467734.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	64	2	5.38076	5.60244	5.82412	3.24968e-4	1.29371e-5	0.0165891	0.00266147
chr19	12529576	12529671	7139736	0	-	0.357895	(0.35,0.378]	chr19	720321	5	INTRON	INTRON	ZNF564	ENSG00000249709.8	ENST00000339282.12:ENST00000427105.1:ENST00000596193.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	69	2	5.40445	5.601265	5.79808	0.00114224	5.23926e-5	0.0307966	0.00590498
chr17	62490993	62491093	6653000	0	+	0.43	(0.408,0.44]	chr17	649307	45	INTRON	INTRON	TLK2	ENSG00000146872.19	ENST00000582809.5:ENST00000684213.1:ENST00000583843.5:ENST00000579450.5:ENST00000577616.1:ENST00000582195.6:ENST00000682085.1:ENST00000580705.5:ENST00000346027.10:ENST00000326270.13:ENST00000682203.1:ENST00000343388.11:ENST00000683536.1:ENST00000684440.1:ENST00000684772.1:ENST00000682274.1:ENST00000682827.1:ENST00000583690.6:ENST00000682075.1:ENST00000683104.1:ENST00000684012.1:ENST00000581041.5:ENST00000684553.1:ENST00000683737.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	68	2	5.29612	5.60125	5.90638	0.00113523	1.84308e-5	0.0307488	0.00328489
chr5	43130811	43130910	2349126	0	+	0.575758	(0.57,1]	chr5	226661	59	INTRON	INTRON	ZNF131	ENSG00000172262.12	ENST00000515326.5:ENST00000682664.1:ENST00000510026.5:ENST00000504359.1:ENST00000509156.5:ENST00000508259.5:ENST00000507218.5:ENST00000306938.8:ENST00000505606.6:ENST00000509634.5:ENST00000509341.5:ENST00000511736.5:ENST00000509931.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	54	2	5.13021	5.59876	6.06731	1.21664e-4	1.59372e-7	0.00992813	1.84145e-4
chr6	89082935	89083035	2916417	0	+	0.33	(0.32,0.35]	chr6	275587	2	SS5_PROX	SS5_PROX:INTRON	PNRC1	ENSG00000146278.11	ENST00000336032.4:ENST00000369472.1:ENST00000354922.3	protein_coding	protein_coding	protein_coding	protein_coding	0	70	2	5.46642	5.59863	5.73084	0.00127669	1.07676e-4	0.0326395	0.00878438
chr11	61301501	61301596	4956155	0	-	0.442105	(0.44,0.476]	chr11	465664	7	EXON_MRNA	EXON_MRNA:INTRON	DDB1	ENSG00000167986.15	ENST00000301764.12:ENST00000680367.1:ENST00000681803.1:ENST00000680717.1:ENST00000679712.1:ENST00000680357.1:ENST00000680075.1:ENST00000679588.1:ENST00000680602.1:ENST00000680881.1:ENST00000681188.1:ENST00000535283.6:ENST00000680452.1:ENST00000681935.1:ENST00000680250.1:ENST00000680959.1:ENST00000681815.1:ENST00000681580.1:ENST00000680345.1:ENST00000451943.6:ENST00000545894.1:ENST00000540166.5:ENST00000538470.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	67	2	5.49878	5.59743	5.69608	2.01872e-4	1.52058e-4	0.0129814	0.0106137
chr1	8877878	8877971	374302	0	-	0.548387	(0.515,0.57]	chr1	43662	5	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	ENO1	ENSG00000074800.16	ENST00000234590.10:ENST00000647408.1:ENST00000646370.2:ENST00000645609.1:ENST00000497492.1:ENST00000646660.1:ENST00000646680.1:ENST00000646906.1:ENST00000646156.1:ENST00000643438.1:ENST00000489867.2:ENST00000486051.5:ENST00000492343.2:ENST00000414948.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	169	2	3.97222	5.596355	7.22049	2.13673e-6	4.45013e-9	9.07669e-4	1.58248e-5
chr9	131158982	131159082	4215969	0	+	0.36	(0.35,0.378]	chr9	386592	2	SS3_PROX	SS3_PROX:INTRON	NUP214	ENSG00000126883.19	ENST00000695497.1:ENST00000695498.1:ENST00000695496.1:ENST00000695495.1:ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000651022.1:ENST00000525980.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	69	2	5.46394	5.596295	5.72865	3.18898e-4	2.60035e-4	0.016499	0.014326
chr21	37380310	37380410	7406357	0	+	0.24	[0,0.28]	chr21	754850	48	INTRON	INTRON	DYRK1A	ENSG00000157540.22	ENST00000646523.1:ENST00000647425.1:ENST00000647188.2:ENST00000647504.1:ENST00000644942.1:ENST00000338785.8:ENST00000643624.1:ENST00000643551.1:ENST00000426672.6:ENST00000398960.7	protein_coding	protein_coding	protein_coding	protein_coding	0	74	2	5.43428	5.594615	5.75495	0.00400834	3.2999e-4	0.0551303	0.0161352
chr7	121127819	121127881	3395039	0	+	0.177419	[0,0.28]	chr7	317741	2	INTRON	INTRON	CPED1	ENSG00000106034.18	ENST00000310396.10:ENST00000428526.5:ENST00000450913.6:ENST00000423795.5:ENST00000443817.1	protein_coding	protein_coding	protein_coding	protein_coding	0	74	2	5.52519	5.59446	5.66373	0.00196371	8.21427e-4	0.0401678	0.0261674
chr1	3785795	3785887	363928	0	-	0.282609	(0.28,0.32]	chr1	42627	2	INTRON	INTRON	LRRC47	ENSG00000130764.10	ENST00000378251.3	protein_coding	protein_coding	protein_coding	protein_coding	0	74	2	5.15358	5.594245	6.03491	0.0052282	4.10265e-5	0.0633615	0.00519615
chr3	17736942	17737042	1630377	0	-	0.46	(0.44,0.476]	chr3	168275	347	INTRON	INTRON	TBC1D5	ENSG00000131374.15	ENST00000253692.11:ENST00000696125.1:ENST00000414318.2:ENST00000429383.8:ENST00000415814.6:ENST00000452492.6:ENST00000412981.5:ENST00000428355.5:ENST00000425944.5:ENST00000430169.5:ENST00000445294.5:ENST00000414349.5:ENST00000443499.6:ENST00000444756.5:ENST00000497531.5:ENST00000443386.5:ENST00000446863.5:ENST00000444471.5:ENST00000481396.5:ENST00000423331.6:ENST00000485432.1:ENST00000471679.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	67	2	5.45097	5.5924	5.73383	1.90652e-4	1.70474e-4	0.0120089	0.0119761
chr16	69453491	69453589	6379864	0	+	0.377551	(0.35,0.378]	chr16	613140	34	INTRON	INTRON	CYB5B	ENSG00000103018.18	ENST00000686649.1:ENST00000684784.1:ENST00000691260.1:ENST00000689149.1:ENST00000692677.1:ENST00000686167.1:ENST00000307892.13:ENST00000688840.1:ENST00000515314.7:ENST00000687677.1:ENST00000568237.2:ENST00000561792.7:ENST00000687780.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	69	2	5.41615	5.590325	5.7645	3.21724e-4	2.7432e-4	0.0159645	0.0151711
chr9	91876660	91876760	4284529	0	-	0.3	(0.28,0.32]	chr9	393909	1005	INTRON	INTRON	ROR2	ENSG00000169071.15	ENST00000375715.5:ENST00000375708.4:ENST00000550066.5:ENST00000495386.5:ENST00000546883.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	71	2	5.55845	5.58779	5.61713	0.00141854	2.86819e-4	0.0340865	0.0150568
chr1	65421130	65421227	137187	0	+	0.474227	(0.44,0.476]	chr1	15466	4	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	LEPROT:LEPR	ENSG00000213625.9:ENSG00000116678.20	ENST00000475108.5:ENST00000371060.7:ENST00000371059.7:ENST00000349533.11:ENST00000371065.9:ENST00000497874.5:ENST00000488747.5:ENST00000484243.1:ENST00000613538.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	68	2	5.1988	5.586930000000001	5.97506	0.00151532	1.26309e-5	0.0352794	0.00264613
chr18	36020589	36020689	6963066	0	-	0.31	(0.28,0.32]	chr18	689044	269	INTRON	INTRON	RPRD1A	ENSG00000141425.18	ENST00000399022.9:ENST00000590898.5:ENST00000357384.8:ENST00000588737.5	protein_coding	protein_coding	protein_coding	protein_coding	0	71	2	5.57617	5.58666	5.59715	0.00123856	3.41866e-4	0.0322669	0.0164909
chr2	135872196	135872296	1233848	0	-	0.52	(0.515,0.57]	chr2	131340	1	SS5_PROX	SS5_PROX:INTRON	MCM6	ENSG00000076003.5	ENST00000264156.3	protein_coding	protein_coding	protein_coding	protein_coding	0	63	2	5.51831	5.586525	5.65474	9.00945e-5	6.99834e-5	0.00844245	0.00692586
chr15	57022772	57022872	6033154	0	+	0.4	(0.378,0.408]	chr15	574669	210	INTRON	INTRON	TCF12	ENSG00000140262.18	ENST00000438423.6:ENST00000267811.9:ENST00000333725.10:ENST00000560190.5:ENST00000559609.5:ENST00000558908.5:ENST00000557843.5:ENST00000557947.5:ENST00000561152.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	67	2	5.57782	5.586320000000001	5.59482	4.23783e-4	1.18586e-4	0.0189958	0.00930884
chr17	57301563	57301662	6633203	0	+	0.373737	(0.35,0.378]	chr17	648017	64	INTRON	INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000581776.5:ENST00000674961.1:ENST00000582453.5:ENST00000675656.1:ENST00000322684.7:ENST00000579590.5:ENST00000676073.1:ENST00000675822.1:ENST00000442934.6:ENST00000579180.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	69	2	5.3667299999999996	5.5831	5.79947	3.99274e-4	2.36402e-4	0.0179401	0.0140941
chr17	78404289	78404389	6682559	0	+	0.48	(0.476,0.515]	chr17	652825	2	SS5_PROX	SS5_PROX:INTRON	PGS1	ENSG00000087157.19	ENST00000262764.11:ENST00000589425.5:ENST00000589426.5:ENST00000588169.5:ENST00000585521.2:ENST00000588281.5:ENST00000591996.1:ENST00000586019.1:ENST00000586355.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	66	2	5.54061	5.582915	5.62522	2.4907e-4	1.30462e-4	0.0145812	0.00983066
chr8	17220748	17220847	3707082	0	+	0.373737	(0.35,0.378]	chr8	343710	6	UTR3	UTR3:EXON_MRNA	ZDHHC2	ENSG00000104219.13	ENST00000262096.13	protein_coding	protein_coding	protein_coding	protein_coding	0	68	2	5.51019	5.582179999999999	5.65417	4.33402e-4	2.10803e-4	0.0190829	0.0126882
chr6	38010572	38010672	2858942	0	+	0.45	(0.44,0.476]	chr6	270237	64	INTRON	INTRON	ZFAND3	ENSG00000156639.12	ENST00000287218.9:ENST00000373391.6:ENST00000474522.5:ENST00000373389.5	protein_coding	protein_coding	protein_coding	protein_coding	0	66	2	5.4462	5.581405	5.71661	5.83686e-4	5.13947e-5	0.0223753	0.00585477
chr13	25303355	25303455	5457181	0	+	0.31	(0.28,0.32]	chr13	522870	2	SS5_PROX	SS5_PROX:INTRON	NUP58	ENSG00000139496.17	ENST00000481980.2:ENST00000490231.6:ENST00000695571.1:ENST00000477876.2:ENST00000695572.1:ENST00000463407.6:ENST00000695573.1:ENST00000381736.8:ENST00000695583.1:ENST00000465068.5:ENST00000460326.5:ENST00000480187.5:ENST00000466694.6:ENST00000381718.8:ENST00000695575.1:ENST00000695574.1:ENST00000495460.2:ENST00000381747.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	71	2	5.39235	5.58129	5.77023	0.0024844	1.45293e-4	0.0446195	0.0104769
chr12	45989255	45989354	5315612	0	-	0.30303	(0.28,0.32]	chr12	505641	132	INTRON	INTRON	SCAF11	ENSG00000139218.18	ENST00000369367.8:ENST00000547018.5:ENST00000266589.10:ENST00000395454.6:ENST00000395453.2:ENST00000474828.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:non_stop_decay	0	71	2	5.4906	5.581085	5.67157	9.48957e-4	4.89126e-4	0.0281755	0.0199693
chr17	60378188	60378288	6805736	0	-	0.29	(0.28,0.32]	chr17	672366	322	INTRON	INTRON	USP32	ENSG00000170832.13	ENST00000300896.9:ENST00000590133.5:ENST00000589335.5:ENST00000393003.7:ENST00000588898.1:ENST00000589761.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	71	2	5.4906	5.581085	5.67157	9.48957e-4	4.89126e-4	0.0281755	0.0199693
chr16	30699574	30699658	6338647	0	+	0.452381	(0.44,0.476]	chr16	607710	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SRCAP	ENSG00000080603.17	ENST00000411466.6:ENST00000262518.9	protein_coding	protein_coding	protein_coding	protein_coding	1	135	2	4.68388	5.57936	6.47484	3.88959e-6	1.11281e-6	0.00142343	6.05355e-4
chr12	69244474	69244573	5163546	0	+	0.323232	(0.32,0.35]	chr12	488988	44	INTRON	INTRON	CPSF6	ENSG00000111605.18	ENST00000435070.7:ENST00000550075.5:ENST00000650046.1:ENST00000456847.7:ENST00000266679.8:ENST00000550987.5:ENST00000551516.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	69	2	5.46642	5.579245	5.69207	0.00127669	1.29349e-4	0.0326395	0.00979769
chr1	16626644	16626732	383638	0	-	0.522727	(0.515,0.57]	chr1	45187	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CROCCP2	ENSG00000215908.10	ENST00000639594.1:ENST00000640476.1:ENST00000639456.1:ENST00000412962.4:ENST00000635081.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	64	2	5.30921	5.57911	5.84901	1.98811e-4	3.33916e-5	0.0122787	0.00487221
chr13	79397204	79397304	5626319	0	-	0.29	(0.28,0.32]	chr13	536667	179	INTRON	INTRON	RBM26	ENSG00000139746.16	ENST00000438737.3:ENST00000438724.5:ENST00000622611.4:ENST00000267229.11:ENST00000472143.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	73	2	5.15358	5.57897	6.00436	0.0052282	4.77464e-5	0.0633615	0.00563886
chr17	65014156	65014256	6817994	0	-	0.25	[0,0.28]	chr17	674118	50	UTR3	UTR3:EXON_MRNA	GNA13	ENSG00000120063.10	ENST00000439174.7:ENST00000541118.1	protein_coding	protein_coding	protein_coding	protein_coding	0	77	2	5.05748	5.578575	6.09967	0.0113653	7.27783e-5	0.0886611	0.00711523
chr17	75383789	75383889	6837579	0	-	0.44	(0.408,0.44]	chr17	675716	506	INTRON	INTRON	GRB2	ENSG00000177885.15	ENST00000316615.9:ENST00000316804.10:ENST00000392562.5:ENST00000392564.5:ENST00000392563.5:ENST00000648046.1:ENST00000578961.5:ENST00000582582.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	66	2	5.4394	5.578285	5.71717	6.50925e-4	5.09043e-5	0.0232863	0.00585477
chr1	19166721	19166821	386366	0	-	0.37	(0.35,0.378]	chr1	45999	3	SS5_PROX	SS5_PROX:INTRON	UBR4	ENSG00000127481.15	ENST00000375254.8:ENST00000417040.1:ENST00000419533.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	68	2	5.35828	5.57818	5.79808	0.00135282	5.23926e-5	0.0336321	0.00590498
chr12	50982602	50982701	5324320	0	-	0.464646	(0.44,0.476]	chr12	507638	4	INTRON	INTRON	SLC11A2	ENSG00000110911.17	ENST00000551215.5:ENST00000547688.7:ENST00000644495.1:ENST00000643884.1:ENST00000546636.5:ENST00000547198.5:ENST00000646264.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	66	2	5.35227	5.573779999999999	5.79529	8.47974e-4	3.3977e-5	0.0267232	0.0046443
chrX	48935518	48935604	7815850	0	-	0.44186	(0.44,0.476]	chrX	796854	1	INTRON	INTRON	OTUD5	ENSG00000068308.15	ENST00000376488.8:ENST00000396743.7:ENST00000455452.5:ENST00000156084.8:ENST00000428668.2:ENST00000484499.5:ENST00000481142.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	66	2	5.35227	5.573779999999999	5.79529	8.47974e-4	3.3977e-5	0.0267232	0.0046443
chr8	6717702	6717802	3695095	0	+	0.34	(0.32,0.35]	chr8	342828	78	INTRON	INTRON	AGPAT5	ENSG00000155189.12	ENST00000285518.11:ENST00000523234.5:ENST00000518327.1:ENST00000523586.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	69	2	5.37833	5.573465000000001	5.7686	0.00174321	8.9843e-5	0.0375363	0.0079464
chr3	47162427	47162527	1681589	0	-	0.33	(0.32,0.35]	chr3	171624	354	INTRON	INTRON	SETD2	ENSG00000181555.22	ENST00000691544.1:ENST00000638947.2:ENST00000409792.4:ENST00000412450.1	protein_coding	protein_coding	protein_coding	protein_coding	0	69	2	5.48083	5.573245	5.66566	6.06695e-4	3.35843e-4	0.0226059	0.0162819
chr8	65683641	65683739	3773830	0	+	0.367347	(0.35,0.378]	chr8	349979	8	INTRON	INTRON	MTFR1	ENSG00000066855.16	ENST00000262146.9:ENST00000522239.5:ENST00000523222.5:ENST00000523170.5:ENST00000424808.6:ENST00000517944.5:ENST00000458689.2:ENST00000518800.5:ENST00000518636.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	68	2	5.31058	5.572735	5.83489	0.00160599	4.33823e-5	0.0364977	0.00532052
chr1	43751806	43751906	86529	0	+	0.48	(0.476,0.515]	chr1	11652	126	INTRON	INTRON	ST3GAL3	ENSG00000126091.21	ENST00000646096.1:ENST00000532911.6:ENST00000643597.1:ENST00000643886.1:ENST00000372372.7:ENST00000545417.5:ENST00000330208.6:ENST00000335430.10:ENST00000361400.9:ENST00000347631.8:ENST00000642331.1:ENST00000647237.1:ENST00000643252.1:ENST00000372374.7:ENST00000361392.9:ENST00000646109.1:ENST00000533997.6:ENST00000353126.8:ENST00000645640.1:ENST00000642934.1:ENST00000643283.1:ENST00000351035.8:ENST00000642949.1:ENST00000489897.6:ENST00000646971.1:ENST00000645142.1:ENST00000645705.1:ENST00000530154.5:ENST00000646027.1:ENST00000646069.1:ENST00000642504.1:ENST00000647148.1:ENST00000262915.8:ENST00000479383.6:ENST00000647482.1:ENST00000645394.1:ENST00000647128.1:ENST00000484868.2:ENST00000461066.6:ENST00000361746.9:ENST00000645034.1:ENST00000645165.1:ENST00000647134.1:ENST00000644195.1:ENST00000642194.1:ENST00000372368.7:ENST00000646686.1:ENST00000372366.6:ENST00000361812.9:ENST00000469715.6:ENST00000372369.5:ENST00000372367.5:ENST00000372365.5:ENST00000528371.5:ENST00000533212.5:ENST00000530581.5:ENST00000531816.1:ENST00000531993.6:ENST00000490541.6:ENST00000372362.6:ENST00000531451.5:ENST00000646416.1:ENST00000645117.1:ENST00000533933.6:ENST00000332628.11:ENST00000643813.1:ENST00000644922.1:ENST00000644287.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	142	2	4.48197	5.569445	6.65692	8.52746e-6	1.86174e-7	0.00223681	2.00929e-4
chr2	151826081	151826181	1243719	0	-	0.38	(0.378,0.408]	chr2	132064	105	INTRON	INTRON	ARL5A:ENSG00000283228	ENSG00000162980.17:ENSG00000283228.1	ENST00000446896.7:ENST00000295087.13:ENST00000636024.1:ENST00000637224.1:ENST00000458140.6:ENST00000428992.2:ENST00000637559.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	67	2	5.28033	5.56906	5.85779	0.00143651	2.83884e-5	0.0340925	0.00422437
chr7	91968974	91969074	3351295	0	+	0.53	(0.515,0.57]	chr7	312180	275	INTRON	INTRON	AKAP9	ENSG00000127914.19	ENST00000680534.1:ENST00000680513.1:ENST00000680072.1:ENST00000679821.1:ENST00000679554.1:ENST00000356239.8:ENST00000679521.1:ENST00000680181.1:ENST00000681722.1:ENST00000680766.1:ENST00000679448.1:ENST00000681412.1:ENST00000680047.1:ENST00000679474.1:ENST00000680952.1:ENST00000679457.1:ENST00000679722.1:ENST00000680074.1:ENST00000493453.1:ENST00000394564.5:ENST00000674381.2:ENST00000359028.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	62	2	5.52425	5.56837	5.61249	1.68822e-4	4.24748e-5	0.0119215	0.00526976
chr1	12318537	12318637	29144	0	+	0.56	(0.515,0.57]	chr1	3545	2	SS5_PROX	SS5_PROX:INTRON	VPS13D	ENSG00000048707.15	ENST00000620676.6:ENST00000613099.4:ENST00000011700.10:ENST00000646917.1:ENST00000460333.5:ENST00000487188.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	62	2	5.47799	5.567685	5.65738	2.09356e-4	3.32659e-5	0.0131276	0.00461719
chr1	21763577	21763676	396674	0	-	0.515152	(0.476,0.515]	chr1	47345	54	INTRON	INTRON	USP48	ENSG00000090686.16	ENST00000400301.5:ENST00000308271.14:ENST00000529637.5:ENST00000421625.6:ENST00000527823.5:ENST00000532737.1:ENST00000489108.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	69	2	5.03466	5.56725	6.09984	0.00252065	6.54592e-6	0.0446195	0.00180994
chr19	21178651	21178750	7040329	0	+	0.383838	(0.378,0.408]	chr19	701956	28	INTRON	INTRON	ZNF431	ENSG00000196705.8	ENST00000600692.5:ENST00000599296.5:ENST00000594425.5:ENST00000311048.11:ENST00000598331.1	protein_coding	protein_coding	protein_coding	protein_coding	0	66	2	5.51174	5.56652	5.6213	5.93655e-4	9.58854e-5	0.0225024	0.00822887
chr2	61362946	61363046	1129465	0	-	0.25	[0,0.28]	chr2	121448	119	INTRON	INTRON	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000453133.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	74	2	5.21054	5.5662199999999995	5.9219	0.00758653	1.62133e-4	0.0749063	0.0109774
chr1	22054117	22054216	42214	0	+	0.212121	[0,0.28]	chr1	5065	16	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	ENSG00000289694:CDC42	ENSG00000289694.1:ENSG00000070831.18	ENST00000695855.1:ENST00000695856.1:ENST00000344548.8:ENST00000400259.5:ENST00000667384.2:ENST00000411827.2:ENST00000695858.1:ENST00000695857.1:ENST00000315554.14:ENST00000695859.1:ENST00000498236.1:ENST00000656825.1:ENST00000651171.1:ENST00000652582.1:ENST00000695860.1:ENST00000695796.1:ENST00000695797.1:ENST00000662562.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	167	2	4.207	5.565945	6.92489	6.30898e-5	1.34406e-5	0.00658818	0.00289395
chr14	23070286	23070370	5842724	0	-	0.392857	(0.378,0.408]	chr14	555611	3	INTRON	INTRON	ACIN1	ENSG00000100813.15	ENST00000605057.6:ENST00000557515.5:ENST00000262710.5:ENST00000457657.5:ENST00000357481.6:ENST00000338631.10:ENST00000397341.7:ENST00000555053.5:ENST00000555566.1:ENST00000553721.5:ENST00000557432.2:ENST00000555352.2:ENST00000553501.1:ENST00000554979.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	66	2	5.55388	5.56585	5.57782	5.01023e-4	1.18586e-4	0.0206993	0.00930884
chr9	131151894	131151994	4215898	0	+	0.31	(0.28,0.32]	chr9	386589	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	NUP214	ENSG00000126883.19	ENST00000695497.1:ENST00000695498.1:ENST00000695496.1:ENST00000695495.1:ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000651022.1:ENST00000525980.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	70	2	5.53402	5.5655850000000004	5.59715	0.00123856	4.0843e-4	0.0322669	0.0181306
chr12	131937686	131937785	5250090	0	+	0.373737	(0.35,0.378]	chr12	499261	29	INTRON	INTRON	PUS1	ENSG00000177192.14	ENST00000443358.6:ENST00000322060.9:ENST00000376649.8:ENST00000542167.2:ENST00000538037.5:ENST00000535067.5:ENST00000537484.1	protein_coding	protein_coding	protein_coding	protein_coding	0	69	2	5.26251	5.564745	5.86698	6.20882e-4	1.76496e-4	0.0223951	0.01216
chr11	61965977	61966077	4958188	0	-	0.57	(0.515,0.57]	chr11	466166	4	SS3_PROX	SS3_PROX:INTRON	FTH1	ENSG00000167996.16	ENST00000529191.5:ENST00000529631.5:ENST00000530019.5:ENST00000273550.12:ENST00000534180.1:ENST00000532829.5:ENST00000620041.4:ENST00000526640.5:ENST00000532601.1:ENST00000534719.1:ENST00000533138.1:ENST00000529548.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	123	2	4.48877	5.56456	6.64035	2.68161e-6	2.87843e-7	0.00105178	2.89707e-4
chr4	2241897	2241992	2098050	0	-	0.663158	(0.57,1]	chr4	207592	5	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HAUS3	ENSG00000214367.9	ENST00000672739.1:ENST00000672725.1:ENST00000506763.5:ENST00000243706.8:ENST00000443786.3:ENST00000514395.1:ENST00000502440.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	118	2	4.60041	5.564515	6.52862	6.81445e-9	3.31508e-9	2.1176e-5	1.71359e-5
chr5	612943	613042	2313381	0	+	0.353535	(0.35,0.378]	chr5	223834	1	INTRON	INTRON	CEP72	ENSG00000112877.8	ENST00000264935.6	protein_coding	protein_coding	protein_coding	protein_coding	0	67	2	5.51019	5.5628150000000005	5.61544	5.06729e-4	2.10803e-4	0.020816	0.0126882
chr6	149575367	149575465	2995760	0	+	0.408163	(0.378,0.408]	chr6	280288	24	INTRON	INTRON	GINM1	ENSG00000055211.14	ENST00000650599.1:ENST00000367419.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	67	2	5.33829	5.56101	5.78373	3.59275e-4	1.89312e-4	0.0169207	0.012565
chr8	55777489	55777588	3753830	0	+	0.383838	(0.378,0.408]	chr8	349174	34	INTRON	INTRON	TGS1	ENSG00000137574.11	ENST00000260129.6:ENST00000523948.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	66	2	5.48672	5.560675	5.63463	3.59226e-4	1.83012e-4	0.0175484	0.01176
chr10	89714854	89714954	4484692	0	+	0.3	(0.28,0.32]	chr10	412729	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	KIF20B	ENSG00000138182.15	ENST00000371728.8:ENST00000260753.8	protein_coding	protein_coding	protein_coding	protein_coding	0	70	2	5.34765	5.55894	5.77023	0.00287138	1.45293e-4	0.0474836	0.0104769
chr1	42178718	42178817	430853	0	-	0.464646	(0.44,0.476]	chr1	52259	23	UTR3	UTR3:EXON_MRNA	FOXJ3	ENSG00000198815.9	ENST00000372573.5:ENST00000372572.5:ENST00000372571.5:ENST00000361776.5:ENST00000545068.5:ENST00000361346.6	protein_coding	protein_coding	protein_coding	protein_coding	0	65	2	5.4	5.558305000000001	5.71661	7.02611e-4	5.13947e-5	0.024224	0.00585477
chr5	65993407	65993500	2371519	0	+	0.333333	(0.32,0.35]	chr5	228498	1	INTRON	INTRON	ERBIN	ENSG00000112851.15	ENST00000380943.6:ENST00000416865.6:ENST00000380935.5:ENST00000284037.10:ENST00000380938.6:ENST00000511297.5:ENST00000506030.5:ENST00000508515.1	protein_coding	protein_coding	protein_coding	protein_coding	0	71	2	5.07629	5.557955	6.03962	0.00468114	2.28019e-5	0.0600108	0.0037274
chr7	139416406	139416500	3438168	0	+	0.287234	(0.28,0.32]	chr7	320378	4	EXON_LNCRNA	EXON_LNCRNA:INTRON	LUC7L2:FMC1-LUC7L2	ENSG00000146963.18:ENSG00000269955.2	ENST00000541170.7:ENST00000541515.3:ENST00000619796.4:ENST00000354926.9:ENST00000456182.5:ENST00000263545.7:ENST00000498518.1:ENST00000482860.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	152	2	4.45663	5.55699	6.65735	1.42548e-5	1.06049e-5	0.003011	0.002379
chr7	5604610	5604690	3272542	0	+	0.35	(0.32,0.35]	chr7	304185	2	INTRON	INTRON	FSCN1	ENSG00000075618.18	ENST00000382361.8:ENST00000473330.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	68	2	5.48083	5.55439	5.62795	7.01392e-4	3.35843e-4	0.024224	0.0162819
chr11	78416945	78417045	5000379	0	-	0.72	(0.57,1]	chr11	472472	525	INTRON	INTRON	GAB2	ENSG00000033327.13	ENST00000361507.5:ENST00000526030.1:ENST00000528886.5:ENST00000530915.1:ENST00000534823.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	50	2	5.45864	5.55227	5.6459	1.90577e-5	3.59512e-6	0.00354138	0.00123456
chr1	23074501	23074598	44327	0	+	0.42268	(0.408,0.44]	chr1	5322	1	UTR3	UTR3:EXON_MRNA:INTRON	KDM1A	ENSG00000004487.18	ENST00000692214.1:ENST00000686934.1:ENST00000689853.1:ENST00000465864.2:ENST00000691256.1:ENST00000688122.1:ENST00000692056.1:ENST00000692853.1:ENST00000689366.1:ENST00000686270.1:ENST00000685102.1:ENST00000690627.1:ENST00000686771.1:ENST00000692209.1:ENST00000686339.1:ENST00000691813.1:ENST00000693156.1:ENST00000688235.1:ENST00000692975.1:ENST00000687202.1:ENST00000691682.1:ENST00000691404.1:ENST00000691694.1:ENST00000688680.1:ENST00000356634.7:ENST00000400181.9:ENST00000689677.1:ENST00000686793.1:ENST00000689971.1:ENST00000688943.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	65	2	5.45153	5.551015	5.6505	2.70553e-4	1.89064e-4	0.0150813	0.0119565
chr3	42218196	42218296	1405730	0	+	0.42	(0.408,0.44]	chr3	147607	57	INTRON	INTRON	TRAK1	ENSG00000182606.17	ENST00000487159.5:ENST00000672026.1:ENST00000673621.2:ENST00000327628.10:ENST00000396175.5	protein_coding	protein_coding	protein_coding	protein_coding	0	66	2	5.29779	5.54871	5.79963	3.80479e-4	1.39468e-4	0.0176313	0.0107072
chr4	98361871	98361971	2001867	0	+	0.32	(0.28,0.32]	chr4	199710	89	INTRON	INTRON	RAP1GDS1	ENSG00000138698.15	ENST00000408927.8:ENST00000509011.5:ENST00000380158.8:ENST00000264572.11:ENST00000505378.5:ENST00000508213.5:ENST00000512857.5:ENST00000511379.5:ENST00000514122.5:ENST00000453712.6:ENST00000511212.5:ENST00000510870.5:ENST00000507303.5:ENST00000408900.7:ENST00000339360.9:ENST00000503745.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	71	2	5.25141	5.546895	5.84238	0.00125199	5.0114e-4	0.0328543	0.0206993
chr11	28096450	28096546	4938330	0	-	0.302083	(0.28,0.32]	chr11	462517	13	INTRON	INTRON	KIF18A	ENSG00000121621.7	ENST00000263181.7:ENST00000533466.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	69	2	5.53402	5.546234999999999	5.55845	0.00141854	4.0843e-4	0.0340865	0.0181306
chr2	53915283	53915382	1119996	0	-	0.535354	(0.515,0.57]	chr2	119993	48	INTRON	INTRON	PSME4	ENSG00000068878.15	ENST00000404125.6:ENST00000389993.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	61	2	5.52425	5.54521	5.56617	1.68822e-4	5.44229e-5	0.0119215	0.00603408
chr7	65752903	65752997	3322750	0	+	0.404255	(0.378,0.408]	chr7	308952	2	INTRON	INTRON	CCT6P1	ENSG00000228409.7	ENST00000686363.1:ENST00000688735.1:ENST00000689814.1:ENST00000690196.1:ENST00000690636.1:ENST00000687809.1:ENST00000688944.1:ENST00000691983.1:ENST00000688184.1:ENST00000688478.1:ENST00000443108.7:ENST00000686689.1:ENST00000689785.1:ENST00000685316.1:ENST00000442266.3:ENST00000685398.1:ENST00000434500.6	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	65	2	5.46833	5.544815	5.6213	7.05018e-4	9.58854e-5	0.024224	0.00822887
chr7	45106764	45106864	3528908	0	-	0.38	(0.378,0.408]	chr7	329180	11	EXON_MRNA	EXON_MRNA:INTRON	TBRG4	ENSG00000136270.14	ENST00000395655.8:ENST00000361278.7:ENST00000258770.8:ENST00000494076.5:ENST00000495973.5:ENST00000478532.5:ENST00000461363.1:ENST00000477328.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	65	2	5.51174	5.544779999999999	5.57782	5.93655e-4	1.18586e-4	0.0225024	0.00930884
chr17	59914903	59915003	6643989	0	+	0.33	(0.32,0.35]	chr17	648826	2	SS5_PROX	SS5_PROX:INTRON	RPS6KB1	ENSG00000108443.14	ENST00000393021.7:ENST00000472940.5:ENST00000225577.9:ENST00000443572.6:ENST00000489824.1:ENST00000406116.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	68	2	5.38684	5.54462	5.7024	5.25722e-4	5.01164e-4	0.0210958	0.020217099999999998
chr6	7211166	7211260	2799405	0	+	0.351064	(0.35,0.378]	chr6	263767	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RREB1	ENSG00000124782.21	ENST00000379933.7:ENST00000379938.7:ENST00000349384.10:ENST00000334984.10:ENST00000475946.5:ENST00000483150.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	138	2	4.56873	5.543895	6.51906	7.44219e-6	3.13066e-6	0.00205207	0.00114282
chr7	883542	883636	3269179	0	+	0.606383	(0.57,1]	chr7	303675	1	UTR5	UTR5:EXON_MRNA:INTRON	SUN1:GET4	ENSG00000164828.18:ENSG00000239857.7	ENST00000457861.1:ENST00000265857.8:ENST00000412734.6:ENST00000407192.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	50	2	5.33608	5.543419999999999	5.75076	3.92497e-5	1.73259e-6	0.00533644	7.91759e-4
chrX	3905079	3905179	7747646	0	-	0.55	(0.515,0.57]	chrX	793155	4	SS5_PROX	SS5_PROX:INTRON	ENSG00000285756	ENSG00000285756.2	ENST00000650538.1:ENST00000451781.1	lncRNA	lncRNA	lncRNA	lncRNA	0	64	2	5.12974	5.5419350000000005	5.95413	4.54392e-4	1.89589e-5	0.0192381	0.00354138
chr17	49749552	49749652	6794010	0	-	0.37	(0.35,0.378]	chr17	670428	24	INTRON	INTRON	FAM117A	ENSG00000121104.8	ENST00000240364.7:ENST00000513602.5:ENST00000503855.5:ENST00000514018.5:ENST00000505159.5:ENST00000506156.1:ENST00000509347.5:ENST00000503720.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	66	2	5.35828	5.539895	5.72151	0.00135282	7.69755e-5	0.0336321	0.00735438
chr7	157171940	157172039	3454273	0	+	0.454545	(0.44,0.476]	chr7	322918	11	INTRON	INTRON	UBE3C	ENSG00000009335.18	ENST00000611269.4:ENST00000348165.10:ENST00000389103.4	protein_coding	protein_coding	protein_coding	protein_coding	0	64	2	5.4462	5.53979	5.63338	5.83686e-4	7.86121e-5	0.0223753	0.00738014
chr5	154434861	154434960	2755961	0	-	0.50505	(0.476,0.515]	chr5	259910	12	EXON_LNCRNA	EXON_LNCRNA:INTRON	SAP30L-AS1	ENSG00000245275.8	ENST00000658072.1:ENST00000519727.5:ENST00000652933.1:ENST00000524264.6:ENST00000652895.1:ENST00000501280.4	lncRNA	lncRNA	lncRNA	lncRNA	0	64	2	5.49434	5.539295	5.58425	2.97744e-4	1.62782e-4	0.0160246	0.0109774
chr15	73599586	73599686	6220841	0	-	0.43	(0.408,0.44]	chr15	593918	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	NPTN	ENSG00000156642.17	ENST00000351217.10:ENST00000345330.9:ENST00000565325.5:ENST00000562924.5:ENST00000563691.5:ENST00000565282.5:ENST00000564551.1:ENST00000563753.1:ENST00000567198.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	66	2	5.24267	5.538645000000001	5.83462	4.83767e-4	1.18776e-4	0.0199261	0.00987467
chr2	47895106	47895206	1116010	0	-	0.33	(0.32,0.35]	chr2	119694	65	INTRON	INTRON	FBXO11	ENSG00000138081.22	ENST00000684712.1:ENST00000682451.1:ENST00000403359.8:ENST00000683894.1:ENST00000681999.1:ENST00000682975.1:ENST00000684085.1:ENST00000492225.5:ENST00000424163.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	254	2	3.40501	5.5379950000000004	7.67098	5.66233e-5	4.94658e-10	0.00655354	4.50896e-6
chr10	96134148	96134234	4502236	0	+	0.325581	(0.32,0.35]	chr10	414475	1	INTRON	INTRON	ZNF518A	ENSG00000177853.15	ENST00000614149.2:ENST00000488700.5:ENST00000624776.4:ENST00000539666.5:ENST00000563195.1:ENST00000316045.10	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	67	2	5.42305	5.537635	5.65222	0.00149027	1.55757e-4	0.035	0.0106835
chr17	57301762	57301861	6633205	0	+	0.323232	(0.32,0.35]	chr17	648017	66	INTRON	INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000581776.5:ENST00000674961.1:ENST00000582453.5:ENST00000675656.1:ENST00000322684.7:ENST00000579590.5:ENST00000676073.1:ENST00000675822.1:ENST00000442934.6:ENST00000579180.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	67	2	5.52562	5.53753	5.54944	9.42646e-4	2.76065e-4	0.0280811	0.0147997
chr17	82181557	82181624	6852126	0	-	0.402985	(0.378,0.408]	chr17	679024	1	UTR3	UTR3:EXON_MRNA:INTRON	CCDC57	ENSG00000176155.21	ENST00000694881.1:ENST00000389641.9:ENST00000694882.1:ENST00000665763.1:ENST00000578910.2:ENST00000327026.7:ENST00000392343.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	65	2	5.32968	5.53703	5.74438	0.00119786	5.15539e-5	0.0315806	0.00585477
chrX	123657155	123657254	7878286	0	-	0.383838	(0.378,0.408]	chrX	802527	114	INTRON	INTRON	THOC2	ENSG00000125676.20	ENST00000245838.13:ENST00000355725.8:ENST00000491737.5	protein_coding	protein_coding	protein_coding	protein_coding	0	65	2	5.32968	5.53703	5.74438	0.00119786	5.15539e-5	0.0315806	0.00585477
chr19	9143480	9143580	7011269	0	+	0.29	(0.28,0.32]	chr19	696234	25	INTRON	INTRON	ZNF317	ENSG00000130803.15	ENST00000247956.11:ENST00000360385.7:ENST00000591278.5:ENST00000419608.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	71	2	5.19842	5.5363299999999995	5.87424	0.00152333	4.43011e-4	0.0360297	0.0194241
chr11	77716113	77716213	4994922	0	-	0.37	(0.35,0.378]	chr11	472017	127	INTRON	INTRON	RSF1	ENSG00000048649.14	ENST00000308488.11:ENST00000526324.5:ENST00000528095.5:ENST00000534794.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	66	2	5.31058	5.5354399999999995	5.7603	0.00160599	6.3427e-5	0.0364977	0.00658818
chr3	179323844	179323944	1566761	0	+	0.35	(0.32,0.35]	chr3	162011	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ZNF639	ENSG00000121864.10	ENST00000496856.6:ENST00000491818.5:ENST00000481587.5:ENST00000326361.7	protein_coding	protein_coding	protein_coding	protein_coding	0	67	2	5.37833	5.5352	5.69207	0.00174321	1.29349e-4	0.0375363	0.00979769
chr6	169648533	169648615	3266563	0	-	0.487805	(0.476,0.515]	chr6	303155	3	INTRON	INTRON	WDR27	ENSG00000184465.16	ENST00000448612.6:ENST00000479310.5:ENST00000648472.1:ENST00000423258.5:ENST00000647790.1:ENST00000546525.5:ENST00000441385.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	67	2	5.12072	5.535045	5.94937	8.42139e-4	5.50774e-5	0.0263691	0.0065165
chr7	32515453	32515553	3303433	0	+	0.39	(0.378,0.408]	chr7	306758	193	INTRON	INTRON	AVL9	ENSG00000105778.20	ENST00000485228.1:ENST00000318709.9:ENST00000459629.1:ENST00000409301.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	66	2	5.17627	5.53498	5.89369	0.00208234	2.33849e-5	0.0411801	0.00378116
chr16	58593574	58593673	6496017	0	-	0.474747	(0.44,0.476]	chr16	628630	43	INTRON	INTRON	CNOT1	ENSG00000125107.19	ENST00000317147.10:ENST00000569240.5:ENST00000567188.5:ENST00000441024.6:ENST00000565605.5:ENST00000564557.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	64	2	5.35227	5.53444	5.71661	8.47974e-4	5.13947e-5	0.0267232	0.00585477
chr1	179967788	179967888	267566	0	+	0.27	[0,0.28]	chr1	31297	123	INTRON	INTRON	CEP350	ENSG00000135837.16	ENST00000491495.2:ENST00000367607.8	protein_coding	protein_coding	protein_coding	protein_coding	0	71	2	5.43968	5.533805	5.62793	0.0022037	0.00113119	0.0417893	0.0308465
chr9	137104229	137104328	4222830	0	+	0.494949	(0.476,0.515]	chr9	387932	27	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	MAN1B1	ENSG00000177239.16	ENST00000682881.1:ENST00000683324.1:ENST00000684138.1:ENST00000683135.1:ENST00000542372.2:ENST00000371587.9:ENST00000684366.1:ENST00000684229.1:ENST00000683355.1:ENST00000682117.1:ENST00000683475.1:ENST00000682425.1:ENST00000684645.1:ENST00000683979.1:ENST00000371589.9:ENST00000535144.6:ENST00000684272.1:ENST00000475449.7:ENST00000684759.1:ENST00000545539.6:ENST00000684144.1:ENST00000683987.1:ENST00000682212.1:ENST00000544448.6:ENST00000684297.1:ENST00000474902.5:ENST00000682964.1:ENST00000535028.6:ENST00000536349.6:ENST00000684336.1:ENST00000540391.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	174	2	4.21325	5.53361	6.85397	6.07314e-7	3.35672e-7	4.21822e-4	3.12932e-4
chr1	235158351	235158449	662127	0	-	0.418367	(0.408,0.44]	chr1	78399	13	INTRON	INTRON	RBM34:ARID4B	ENSG00000188739.15:ENSG00000054267.22	ENST00000408888.8:ENST00000474953.5:ENST00000447801.5:ENST00000474086.5:ENST00000476261.5:ENST00000468751.5:ENST00000429912.1:ENST00000475960.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	131	2	4.46858	5.53221	6.59584	4.5816e-6	2.24371e-6	0.00144313	0.00104218
chr1	21735529	21735629	396380	0	-	0.49	(0.476,0.515]	chr1	47298	28	INTRON	INTRON	USP48	ENSG00000090686.16	ENST00000400301.5:ENST00000308271.14:ENST00000529637.5:ENST00000421625.6:ENST00000374730.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	64	2	5.39709	5.53107	5.66505	2.55871e-4	2.08835e-4	0.0142249	0.0131276
chr18	2955693	2955792	6944519	0	-	0.555556	(0.515,0.57]	chr18	686816	7	INTRON	INTRON	LPIN2	ENSG00000101577.10	ENST00000261596.8:ENST00000677752.1:ENST00000584915.1	protein_coding	protein_coding	protein_coding	protein_coding	0	61	2	5.27651	5.53036	5.78421	5.11033e-4	1.63043e-5	0.020816	0.00304426
chr12	111523715	111523813	5412469	0	-	0.377551	(0.35,0.378]	chr12	516910	24	INTRON	INTRON	ATXN2	ENSG00000204842.18	ENST00000642389.2:ENST00000608853.5:ENST00000672613.1:ENST00000673436.1:ENST00000643669.2:ENST00000616825.4:ENST00000389153.10:ENST00000550104.5:ENST00000483311.6:ENST00000672335.1:ENST00000492467.6:ENST00000673557.1:ENST00000673283.1:ENST00000673449.1:ENST00000535949.5:ENST00000542287.6:ENST00000644883.1:ENST00000647305.1:ENST00000671792.1:ENST00000392645.6:ENST00000672105.1:ENST00000471866.5:ENST00000549455.1:ENST00000548492.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	66	2	5.26125	5.529665	5.79808	0.00191117	5.23926e-5	0.03947	0.00590498
chr8	52685692	52685764	3950817	0	-	0.263889	[0,0.28]	chr8	362378	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RB1CC1	ENSG00000023287.13	ENST00000025008.10:ENST00000435644.6:ENST00000521611.1:ENST00000518710.5:ENST00000517963.1:ENST00000518211.1:ENST00000518468.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	71	2	5.30424	5.5295950000000005	5.75495	0.00584781	3.2999e-4	0.0667594	0.0161352
chr1	227305904	227306004	651595	0	-	0.42	(0.408,0.44]	chr1	77110	408	INTRON	INTRON	CDC42BPA	ENSG00000143776.20	ENST00000366766.8:ENST00000366769.7:ENST00000334218.9:ENST00000366767.7:ENST00000366764.8:ENST00000478573.6:ENST00000682551.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	66	2	5.18536	5.527075	5.86879	6.17381e-4	1.0135e-4	0.0223951	0.00906611
chr5	104204688	104204788	2442462	0	+	0.44	(0.408,0.44]	chr5	234410	994	INTRON	INTRON	LINC02163	ENSG00000251026.2	ENST00000662211.1:ENST00000666145.1	lncRNA	lncRNA	lncRNA	lncRNA	0	64	2	5.29612	5.526585	5.75705	0.00113523	4.13252e-5	0.0307488	0.00519938
chr10	69384032	69384132	4446543	0	+	0.4	(0.378,0.408]	chr10	410284	3	SS3_PROX	SS3_PROX:INTRON	HK1	ENSG00000156515.24	ENST00000436817.6:ENST00000360289.6:ENST00000448642.6:ENST00000643399.2:ENST00000298649.8:ENST00000359426.7:ENST00000493591.6:ENST00000494253.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	65	2	5.33829	5.524699999999999	5.71111	3.59275e-4	2.59738e-4	0.0169207	0.0148796
chr16	18878608	18878707	6457618	0	-	0.292929	(0.28,0.32]	chr16	622829	15	EXON_MRNA	EXON_MRNA:INTRON	SMG1	ENSG00000157106.18	ENST00000446231.7:ENST00000565324.5:ENST00000561947.5:ENST00000565224.5:ENST00000568239.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	68	2	5.39235	5.52465	5.65695	0.0024844	2.41184e-4	0.0446195	0.0136674
chr11	59153695	59153791	4794496	0	+	0.46875	(0.44,0.476]	chr11	443923	3	UTR3	UTR3:EXON_MRNA	FAM111A	ENSG00000166801.17	ENST00000528737.5:ENST00000676459.1:ENST00000675163.1:ENST00000676340.1:ENST00000674617.1:ENST00000361723.7:ENST00000420244.6:ENST00000533703.1:ENST00000531147.1	protein_coding	protein_coding	protein_coding	protein_coding	0	65	2	5.24211	5.524290000000001	5.80647	4.87398e-4	1.22335e-4	0.0199652	0.00993581
chr1	52437960	52438039	457382	0	-	0.189873	[0,0.28]	chr1	54956	3	SS3_PROX	SS3_PROX:SS5_PROX:INTRON	TUT4	ENSG00000134744.14	ENST00000371544.7:ENST00000257177.9:ENST00000531722.5:ENST00000474453.6:ENST00000469810.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	71	2	5.34879	5.523725000000001	5.69866	0.00175225	0.00157139	0.0376491	0.0365659
chr19	799625	799716	6992116	0	+	0.604396	(0.57,1]	chr19	692236	3	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	PTBP1	ENSG00000011304.22	ENST00000635647.1:ENST00000627714.2:ENST00000676227.1:ENST00000677277.1:ENST00000592804.2:ENST00000349038.8:ENST00000590887.5:ENST00000586481.5:ENST00000586944.5:ENST00000356948.11:ENST00000394601.8:ENST00000677717.1:ENST00000589575.5:ENST00000587191.3:ENST00000679114.1:ENST00000350092.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	114	2	4.23802	5.522819999999999	6.80762	1.00206e-7	5.31977e-10	1.37836e-4	3.16374e-6
chr6	150999156	150999256	2999217	0	+	0.36	(0.35,0.378]	chr6	280599	136	INTRON	INTRON	MTHFD1L	ENSG00000120254.16	ENST00000611279.4:ENST00000367321.8:ENST00000618312.4:ENST00000478643.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	66	2	5.21018	5.5225349999999995	5.83489	0.00228003	4.33823e-5	0.0426265	0.00532052
chr2	10142875	10142972	690930	0	+	0.536082	(0.515,0.57]	chr2	81101	1	INTRON	INTRON	RRM2	ENSG00000171848.16	ENST00000641498.1:ENST00000646978.1:ENST00000381786.7:ENST00000642996.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	0	61	2	5.30921	5.5224150000000005	5.73562	1.98811e-4	6.01042e-5	0.0122787	0.00680853
chr17	19964820	19964920	6741962	0	-	0.52	(0.515,0.57]	chr17	661936	14	INTRON	INTRON	AKAP10	ENSG00000108599.15	ENST00000225737.11:ENST00000395536.7:ENST00000582611.5:ENST00000572155.1:ENST00000572341.5:ENST00000576896.5:ENST00000571858.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	247	2	5.21497	5.5207250000000005	5.82648	3.02197e-8	5.33286e-11	6.2794e-5	8.20494e-7
chr10	5718815	5718910	4384689	0	+	0.368421	(0.35,0.378]	chr10	404495	7	INTRON	INTRON	TASOR2	ENSG00000108021.21	ENST00000695832.1:ENST00000328090.9:ENST00000695737.1:ENST00000695833.1:ENST00000695834.1:ENST00000695835.1:ENST00000695836.1:ENST00000496681.5:ENST00000480839.6:ENST00000645567.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	67	2	5.20743	5.520524999999999	5.83362	7.78116e-4	2.04087e-4	0.0256531	0.0129859
chr20	32524092	32524191	7326302	0	-	0.50505	(0.476,0.515]	chr20	746117	28	INTRON	INTRON	NOL4L	ENSG00000197183.15	ENST00000621426.7:ENST00000375678.7:ENST00000201961.6	protein_coding	protein_coding	protein_coding	protein_coding	0	66	2	5.12072	5.518735	5.91675	8.42139e-4	6.46096e-5	0.0263691	0.00711194
chr6	131625676	131625770	3221651	0	-	0.202128	[0,0.28]	chr6	299469	3	INTRON	INTRON	MED23	ENSG00000112282.18	ENST00000354577.8:ENST00000368068.8:ENST00000368060.7:ENST00000368058.5:ENST00000368053.8:ENST00000539158.1	protein_coding	protein_coding	protein_coding	protein_coding	0	71	2	5.21054	5.5173000000000005	5.82406	0.00758653	2.47093e-4	0.0749063	0.0139149
chr17	51284545	51284644	6627820	0	+	0.343434	(0.32,0.35]	chr17	647383	37	INTRON	INTRON	UTP18	ENSG00000011260.14	ENST00000225298.12:ENST00000508506.3:ENST00000583725.5:ENST00000583205.5:ENST00000579261.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	66	2	5.42305	5.517144999999999	5.61124	0.00149027	1.88018e-4	0.035	0.011951
chr14	58261120	58261220	5731072	0	+	0.3	(0.28,0.32]	chr14	544105	1	SS5_PROX	SS5_PROX:INTRON	PSMA3	ENSG00000100567.13	ENST00000216455.9:ENST00000554812.5:ENST00000557087.5:ENST00000555931.5:ENST00000412908.6:ENST00000555743.1:ENST00000557508.5:ENST00000553677.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	150	2	4.70437	5.5171	6.32983	6.58821e-5	2.43842e-6	0.0071649	9.91237e-4
chr1	51453635	51453735	453690	0	-	0.26	[0,0.28]	chr1	54395	51	INTRON	INTRON	EPS15	ENSG00000085832.17	ENST00000371733.8:ENST00000371730.6	protein_coding	protein_coding	protein_coding	protein_coding	0	72	2	5.11033	5.516115	5.9219	0.00991388	1.62133e-4	0.0838372	0.0109774
chrX	24774996	24775096	7632527	0	+	0.23	[0,0.28]	chrX	781726	4	SS3_PROX	SS3_PROX:INTRON	POLA1	ENSG00000101868.13	ENST00000672178.1:ENST00000379068.8:ENST00000379059.7:ENST00000611764.2:ENST00000480125.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	70	2	5.43968	5.5154499999999995	5.59122	0.00247649	0.00113119	0.0446195	0.0308465
chr10	17230997	17231093	4398589	0	+	0.333333	(0.32,0.35]	chr10	406072	4	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	VIM	ENSG00000026025.16	ENST00000544301.7:ENST00000224237.9:ENST00000487938.5:ENST00000485947.1:ENST00000469543.5:ENST00000421459.2:ENST00000637053.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	70	2	5.06139	5.514125	5.96686	0.00179023	1.77352e-4	0.0392749	0.0121697
chr16	58557684	58557780	6495637	0	-	0.5625	(0.515,0.57]	chr16	628544	3	INTRON	INTRON	CNOT1	ENSG00000125107.19	ENST00000317147.10:ENST00000569240.5:ENST00000567188.5:ENST00000441024.6:ENST00000569732.1:ENST00000562046.1:ENST00000569882.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	118	2	4.65971	5.511525	6.36334	1.72735e-6	8.15659e-7	8.78167e-4	5.09591e-4
chr2	101292721	101292820	1199388	0	-	0.474747	(0.44,0.476]	chr2	128169	33	INTRON	INTRON	RNF149	ENSG00000163162.9	ENST00000424632.5:ENST00000295317.4:ENST00000478404.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	64	2	5.14378	5.506845	5.86991	0.00184943	2.27008e-5	0.0388609	0.00372337
chr1	205729471	205729571	623681	0	-	0.3	(0.28,0.32]	chr1	74192	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	NUCKS1	ENSG00000069275.13	ENST00000367142.5	protein_coding	protein_coding	protein_coding	protein_coding	0	67	2	5.47779	5.505905	5.53402	0.00187048	4.0843e-4	0.0390476	0.0181306
chr1	185306749	185306819	603602	0	-	0.242857	[0,0.28]	chr1	71896	1	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	IVNS1ABP	ENSG00000116679.16	ENST00000367498.8:ENST00000459929.5:ENST00000422754.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	158	2	4.3431	5.505134999999999	6.66717	4.28223e-5	3.14738e-5	0.00556133	0.00449886
chr22	23266359	23266456	7484071	0	+	0.525773	(0.515,0.57]	chr22	763569	15	INTRON	INTRON	BCR	ENSG00000186716.21	ENST00000359540.7:ENST00000305877.13:ENST00000427791.1	protein_coding	protein_coding	protein_coding	protein_coding	7	292	2	3.18186	5.503285	7.82471	2.19866e-6	2.17759e-12	0.00103079	1.06933e-7
chr10	92526774	92526873	4664929	0	-	0.454545	(0.44,0.476]	chr10	429856	114	INTRON	INTRON	IDE	ENSG00000119912.18	ENST00000265986.11:ENST00000679312.1:ENST00000650060.1:ENST00000679089.1:ENST00000677569.1:ENST00000677096.1:ENST00000679222.1:ENST00000676540.1:ENST00000678026.1:ENST00000676626.1:ENST00000679069.1:ENST00000678977.1:ENST00000679232.1:ENST00000678844.1:ENST00000679174.1:ENST00000678673.1:ENST00000676816.1:ENST00000678715.1:ENST00000678458.1:ENST00000677079.1:ENST00000677434.1:ENST00000678248.1:ENST00000478361.6:ENST00000677978.1:ENST00000677196.1:ENST00000677953.1:ENST00000436178.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	66	2	5.06288	5.502255	5.94163	0.00102416	6.45088e-5	0.0294041	0.00711194
chr1	198289348	198289447	288993	0	+	0.30303	(0.28,0.32]	chr1	33206	99	INTRON	INTRON	NEK7	ENSG00000151414.15	ENST00000367385.9:ENST00000538004.5:ENST00000493790.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	67	2	5.44583	5.50214	5.55845	0.00141854	5.8721e-4	0.0340865	0.0220073
chr17	43050590	43050690	6775091	0	-	0.49	(0.476,0.515]	chr17	667705	4	SS3_PROX	SS3_PROX:SS5_PROX:INTRON	BRCA1	ENSG00000012048.23	ENST00000471181.7:ENST00000352993.7:ENST00000357654.9:ENST00000468300.5:ENST00000644379.1:ENST00000586385.5:ENST00000591534.5:ENST00000591849.5:ENST00000493795.5:ENST00000491747.6:ENST00000461221.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	65	2	5.12072	5.502045000000001	5.88337	8.42139e-4	7.59355e-5	0.0263691	0.00777694
chr11	114450051	114450127	4869081	0	+	0.421053	(0.408,0.44]	chr11	454428	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	REXO2	ENSG00000076043.11	ENST00000265881.10:ENST00000539275.5:ENST00000543131.5:ENST00000539119.5:ENST00000544827.5:ENST00000546316.5:ENST00000539788.5:ENST00000538403.5:ENST00000538791.3:ENST00000544507.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	63	2	5.24501	5.50103	5.75705	0.00137378	4.13252e-5	0.0336718	0.00519938
chr4	20727833	20727931	1927753	0	+	0.459184	(0.44,0.476]	chr4	193897	6	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	PACRGL	ENSG00000163138.19	ENST00000471979.6:ENST00000360916.9:ENST00000295290.12:ENST00000444671.6:ENST00000503585.6:ENST00000506702.5:ENST00000507634.5:ENST00000513459.5:ENST00000467997.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	65	2	5.12513	5.50038	5.87563	7.96486e-4	8.84961e-5	0.0258804	0.00842626
chr2	187504568	187504667	1289022	0	-	0.272727	[0,0.28]	chr2	135604	4	INTRON	INTRON	TFPI	ENSG00000003436.16	ENST00000233156.9:ENST00000392365.5:ENST00000481132.5:ENST00000435414.5:ENST00000409676.5:ENST00000339091.8:ENST00000421427.5:ENST00000437725.5:ENST00000453013.5:ENST00000417013.5:ENST00000420747.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	70	2	5.3011	5.49988	5.69866	0.00185843	0.00175225	0.039946	0.0376491
chr4	110193549	110193649	2227684	0	-	0.4	(0.378,0.408]	chr4	218024	876	INTRON	INTRON	ELOVL6	ENSG00000170522.10	ENST00000394607.7:ENST00000302274.8:ENST00000514184.5:ENST00000506625.5:ENST00000506461.1:ENST00000503885.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	63	2	5.37739	5.499345	5.6213	0.0010014	9.58854e-5	0.0288906	0.00822887
chr11	64214119	64214217	4802324	0	+	0.316327	(0.28,0.32]	chr11	445346	20	INTRON	INTRON	FERMT3	ENSG00000149781.13	ENST00000544997.5:ENST00000345728.10:ENST00000279227.9:ENST00000541326.5:ENST00000546255.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	68	2	5.25141	5.496875	5.7423400000000004	0.00125199	7.31742e-4	0.0328543	0.0248722
chr8	90469153	90469252	3794793	0	+	0.464646	(0.44,0.476]	chr8	351816	114	INTRON	INTRON	LINC00534	ENSG00000253394.7	ENST00000655523.1:ENST00000658299.1:ENST00000663329.1:ENST00000655219.1:ENST00000662692.1:ENST00000667296.1:ENST00000667565.1:ENST00000653734.1:ENST00000654785.1:ENST00000524361.5:ENST00000668745.1:ENST00000671657.1	lncRNA	lncRNA	lncRNA	lncRNA	0	63	2	5.29723	5.4966550000000005	5.69608	3.83422e-4	2.01872e-4	0.017699199999999998	0.0129814
chr16	87746101	87746199	6538473	0	-	0.520408	(0.515,0.57]	chr16	633538	32	INTRON	INTRON	KLHDC4	ENSG00000104731.14	ENST00000567298.5:ENST00000270583.10:ENST00000347925.9:ENST00000353170.9:ENST00000316853.10:ENST00000562155.5:ENST00000622456.4:ENST00000562261.1:ENST00000566661.5:ENST00000564484.5:ENST00000565328.5:ENST00000569747.5:ENST00000564396.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	59	2	5.46881	5.49653	5.52425	1.68822e-4	9.03271e-5	0.0119215	0.00795396
chr12	79815497	79815596	5375323	0	-	0.353535	(0.35,0.378]	chr12	512736	46	INTRON	INTRON	PPP1R12A	ENSG00000058272.19	ENST00000261207.9:ENST00000450142.7:ENST00000437004.6:ENST00000546369.5:ENST00000550107.5:ENST00000553081.5:ENST00000547330.5:ENST00000547131.1:ENST00000650220.1	protein_coding	protein_coding	protein_coding	protein_coding	0	68	2	4.92355	5.49637	6.06919	0.00573514	1.23263e-5	0.0657377	0.00261354
chr20	35345589	35345688	7334530	0	-	0.343434	(0.32,0.35]	chr20	747141	16	UTR3	UTR3:EXON_MRNA:INTRON	UQCC1	ENSG00000101019.22	ENST00000374380.6:ENST00000374394.7:ENST00000374384.6:ENST00000359226.6:ENST00000349714.9:ENST00000457259.5:ENST00000374385.10:ENST00000453855.5:ENST00000397556.7:ENST00000424405.5:ENST00000497717.5:ENST00000443429.5:ENST00000438533.5:ENST00000397554.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	65	2	5.46642	5.49602	5.52562	0.00127669	2.76065e-4	0.0326395	0.0147997
chr14	22918798	22918898	5841621	0	-	0.37	(0.35,0.378]	chr14	555214	4	SS5_PROX	SS5_PROX:INTRON	RBM23	ENSG00000100461.18	ENST00000359890.8:ENST00000555209.5:ENST00000399922.6:ENST00000557667.5:ENST00000346528.9:ENST00000542016.6:ENST00000307814.10:ENST00000557403.5:ENST00000555722.5:ENST00000553920.5:ENST00000557227.5:ENST00000555714.5:ENST00000554256.5:ENST00000556687.5:ENST00000553902.5:ENST00000554955.5:ENST00000556984.5:ENST00000557549.5:ENST00000555676.5:ENST00000557571.5:ENST00000556862.5:ENST00000557464.5:ENST00000554618.5:ENST00000556365.1:ENST00000553777.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	68	2	5.02832	5.49549	5.96266	0.00156444	1.153e-4	0.0365263	0.00968369
chr10	125090414	125090514	4713634	0	-	0.34	(0.32,0.35]	chr10	434903	17	INTRON	INTRON	CTBP2	ENSG00000175029.17	ENST00000337195.9:ENST00000411419.6:ENST00000494626.6:ENST00000531469.5:ENST00000460976.5:ENST00000476817.1:ENST00000530884.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	65	2	5.37833	5.494785	5.61124	0.00174321	1.88018e-4	0.0375363	0.011951
chr20	35718190	35718288	7336304	0	-	0.244898	[0,0.28]	chr20	747446	10	INTRON	INTRON	RBM39	ENSG00000131051.24	ENST00000253363.11:ENST00000639702.1:ENST00000656873.1:ENST00000463004.5:ENST00000361162.10:ENST00000461283.5:ENST00000403542.6:ENST00000338163.10:ENST00000528062.7:ENST00000429968.5:ENST00000444878.5:ENST00000665058.1:ENST00000492779.5:ENST00000448303.5:ENST00000615771.5:ENST00000490484.7:ENST00000494274.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	74	2	4.88625	5.49296	6.09967	0.0173315	7.27783e-5	0.104099	0.00711523
chr5	140563223	140563280	2738150	0	-	0.315789	(0.28,0.32]	chr5	257899	1	SS5_PROX	SS5_PROX:INTRON	APBB3	ENSG00000113108.20	ENST00000357560.9:ENST00000358580.9:ENST00000510241.5:ENST00000509914.5:ENST00000354402.9:ENST00000356738.6:ENST00000467078.5:ENST00000511896.5:ENST00000412920.7:ENST00000511201.2:ENST00000506289.5:ENST00000513507.5:ENST00000505617.5:ENST00000506958.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	69	2	5.14341	5.492895000000001	5.84238	0.00185891	5.0114e-4	0.039946	0.0206993
chr1	180792932	180793032	271207	0	+	0.27	[0,0.28]	chr1	31626	47	INTRON	INTRON	XPR1	ENSG00000143324.14	ENST00000367590.9:ENST00000367589.3	protein_coding	protein_coding	protein_coding	protein_coding	0	70	2	5.1613	5.49268	5.82406	0.00866441	2.47093e-4	0.0787025	0.0139149
chr7	7222334	7222433	3274991	0	+	0.323232	(0.32,0.35]	chr7	304579	119	INTRON	INTRON	C1GALT1	ENSG00000106392.11	ENST00000429911.5:ENST00000436587.7:ENST00000476068.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	65	2	5.33218	5.4922	5.65222	0.00204346	1.55757e-4	0.04086	0.0106835
chr7	143297434	143297532	3441381	0	+	0.387755	(0.378,0.408]	chr7	320927	23	INTRON	INTRON	CASP2	ENSG00000106144.20	ENST00000619992.4:ENST00000310447.10:ENST00000350623.7:ENST00000493642.5:ENST00000472067.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	63	2	5.38948	5.4921500000000005	5.59482	4.23783e-4	2.85992e-4	0.0189958	0.0150568
chr12	91589235	91589335	5385109	0	-	0.38	(0.378,0.408]	chr12	513485	820	INTRON	INTRON	ENSG00000289605	ENSG00000289605.1	ENST00000685093.1	lncRNA	lncRNA	lncRNA	lncRNA	1	141	2	4.51368	5.49211	6.47054	9.43478e-6	7.48237e-7	0.00236268	4.86019e-4
chr2	95861369	95861469	1178375	0	-	0.33	(0.32,0.35]	chr2	125761	9	INTRON	INTRON	ANKRD36C	ENSG00000174501.15	ENST00000295246.7:ENST00000456556.5:ENST00000531153.5:ENST00000534304.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	65	2	5.4346	5.49202	5.54944	9.42646e-4	4.09682e-4	0.0280811	0.0181306
chr1	207345057	207345156	303510	0	+	0.353535	(0.35,0.378]	chr1	34926	41	INTRON	INTRON	CD55	ENSG00000196352.18	ENST00000695822.1:ENST00000695823.1:ENST00000695826.1:ENST00000695825.1:ENST00000695827.1:ENST00000645323.1:ENST00000391921.9:ENST00000367064.9:ENST00000314754.12:ENST00000644836.1:ENST00000476590.1:ENST00000465534.5:ENST00000618707.2:ENST00000635614.2:ENST00000695831.1:ENST00000634386.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	64	2	5.3667299999999996	5.491085	5.61544	5.06729e-4	3.99274e-4	0.020816	0.0179401
chr15	89256907	89257007	6095861	0	+	0.53	(0.515,0.57]	chr15	580086	17	INTRON	INTRON	FANCI	ENSG00000140525.20	ENST00000674831.1:ENST00000300027.12:ENST00000568670.5:ENST00000567891.5:ENST00000310775.12:ENST00000696717.1:ENST00000676003.1:ENST00000565255.5:ENST00000564920.5:ENST00000696718.1:ENST00000447611.6:ENST00000570110.1:ENST00000696719.1:ENST00000567996.5:ENST00000563250.5:ENST00000565522.5:ENST00000564636.1:ENST00000696720.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	59	2	5.3644	5.4884699999999995	5.61254	1.52226e-4	1.10757e-4	0.0106137	0.00945003
chrX	123704298	123704396	7878769	0	-	0.346939	(0.32,0.35]	chrX	802582	4	INTRON	INTRON	THOC2	ENSG00000125676.20	ENST00000245838.13:ENST00000355725.8:ENST00000433883.1:ENST00000419789.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	65	2	5.38684	5.488035	5.58923	8.12357e-4	5.01164e-4	0.0263656	0.020217099999999998
chr9	123210284	123210384	4339894	0	-	0.3	(0.28,0.32]	chr9	398947	256	INTRON	INTRON	STRBP	ENSG00000165209.19	ENST00000348403.10:ENST00000360998.3:ENST00000407982.6:ENST00000479114.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	67	2	5.2046	5.487415	5.77023	0.00448664	1.45293e-4	0.0593175	0.0104769
chr22	21495285	21495385	7560043	0	-	0.48	(0.476,0.515]	chr22	773318	28	INTRON	INTRON	PI4KAP2	ENSG00000183506.17	ENST00000450651.5:ENST00000467443.5:ENST00000479693.1:ENST00000476537.1:ENST00000491562.5	transcribed_unitary_pseudogene	retained_intron	transcribed_unitary_pseudogene	retained_intron:processed_transcript	0	62	2	5.25945	5.4858	5.71215	0.00111445	5.54639e-5	0.0306328	0.00609037
chr1	41219694	41219794	430604	0	-	0.51	(0.476,0.515]	chr1	52255	331	INTRON	INTRON	SCMH1	ENSG00000010803.17	ENST00000695335.1:ENST00000372596.5:ENST00000372597.5:ENST00000337495.9:ENST00000488592.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	62	2	5.34589	5.485555	5.62522	3.224e-4	2.4907e-4	0.0159645	0.0145812
chr17	57990390	57990489	6799880	0	-	0.252525	[0,0.28]	chr17	671422	7	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	ENSG00000266086:ENSG00000264112	ENSG00000266086.3:ENSG00000264112.1	ENST00000578794.2:ENST00000665125.1:ENST00000582096.1:ENST00000577267.1:ENST00000585065.1	protein_coding	nonsense_mediated_decay	protein_coding:lncRNA	nonsense_mediated_decay:lncRNA:processed_transcript	0	70	2	5.20071	5.483395	5.76608	0.00261806	0.00140074	0.0470772	0.0340865
chr7	130179525	130179625	3638489	0	-	0.27	[0,0.28]	chr7	338371	6	INTRON	INTRON	TMEM209	ENSG00000146842.17	ENST00000397622.7:ENST00000473456.5:ENST00000462753.5:ENST00000467599.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	69	2	5.21054	5.4827449999999995	5.75495	0.00758653	3.2999e-4	0.0749063	0.0161352
chr2	241335640	241335707	1053818	0	+	0.328358	(0.32,0.35]	chr2	112230	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SEPTIN2	ENSG00000168385.18	ENST00000391973.6:ENST00000428282.5:ENST00000492978.5:ENST00000360051.7:ENST00000407017.5:ENST00000469434.5:ENST00000616972.4:ENST00000495463.5:ENST00000475474.5:ENST00000401990.5:ENST00000469175.5:ENST00000407971.5:ENST00000457335.5:ENST00000436795.5:ENST00000494824.5:ENST00000411484.5:ENST00000462147.5:ENST00000434955.5:ENST00000466211.5:ENST00000391971.7:ENST00000402092.6:ENST00000473479.5:ENST00000464128.5:ENST00000467971.5:ENST00000425899.5:ENST00000443492.5:ENST00000437066.5:ENST00000475823.5:ENST00000449239.5:ENST00000366210.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	65	2	5.33745	5.4826999999999995	5.62795	7.01392e-4	6.1485e-4	0.024224	0.0223951
chr14	36997594	36997694	5876263	0	-	0.44	(0.408,0.44]	chr14	558013	1222	INTRON	INTRON	SLC25A21	ENSG00000183032.12	ENST00000331299.6:ENST00000555449.5:ENST00000557611.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	62	2	5.35087	5.4807749999999995	5.61068	3.21002e-4	3.00323e-4	0.0165409	0.0155054
chr20	58365926	58366025	7289525	0	+	0.414141	(0.408,0.44]	chr20	741657	64	UTR3	UTR3:EXON_MRNA	RAB22A	ENSG00000124209.4	ENST00000244040.4	protein_coding	protein_coding	protein_coding	protein_coding	0	62	2	5.35087	5.4807749999999995	5.61068	3.21002e-4	3.00323e-4	0.0165409	0.0155054
chr1	77697126	77697221	493485	0	-	0.252632	[0,0.28]	chr1	58327	13	UTR3	UTR3:EXON_MRNA	USP33	ENSG00000077254.14	ENST00000370794.7:ENST00000370793.5:ENST00000357428.5:ENST00000481579.5	protein_coding	protein_coding	protein_coding	protein_coding	0	68	2	5.43428	5.479735	5.52519	0.00400834	8.21427e-4	0.0551303	0.0261674
chr20	50584075	50584172	7286661	0	+	0.484536	(0.476,0.515]	chr20	741290	15	UTR3	UTR3:EXON_MRNA	PTPN1	ENSG00000196396.10	ENST00000541713.5:ENST00000371621.5	protein_coding	protein_coding	protein_coding	protein_coding	0	63	2	5.18039	5.47936	5.77833	6.58744e-4	1.24749e-4	0.0232396	0.010049
chr7	131338081	131338181	3416544	0	+	0.38	(0.378,0.408]	chr7	319187	97	INTRON	INTRON	MKLN1	ENSG00000128585.18	ENST00000421797.6:ENST00000416992.6:ENST00000429546.5:ENST00000446815.5:ENST00000494286.5:ENST00000352689.11:ENST00000494785.5:ENST00000458153.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	143	2	3.90863	5.47935	7.05007	2.19981e-4	1.2996e-8	0.0135522	3.91523e-5
chr8	55771075	55771175	3954646	0	-	0.48	(0.476,0.515]	chr8	362702	67	INTRON	INTRON	TMEM68	ENSG00000167904.16	ENST00000334667.6:ENST00000434581.7:ENST00000519784.5:ENST00000523073.5:ENST00000519780.5:ENST00000522090.5:ENST00000523423.5:ENST00000520414.5:ENST00000521229.5:ENST00000522576.5:ENST00000523180.5	protein_coding	protein_coding	protein_coding	protein_coding	0	62	2	5.20645	5.479240000000001	5.75203	0.00136049	4.51048e-5	0.0336321	0.0054649
chr2	23780873	23780973	1079461	0	-	0.3	(0.28,0.32]	chr2	115203	149	INTRON	INTRON	ATAD2B	ENSG00000119778.15	ENST00000238789.10:ENST00000381024.4:ENST00000474583.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	66	2	5.30153	5.47924	5.65695	0.00332518	2.41184e-4	0.0512081	0.0136674
chr9	4729890	4729989	4228816	0	-	0.30303	(0.28,0.32]	chr9	388786	69	INTRON	INTRON	AK3	ENSG00000147853.17	ENST00000381809.8:ENST00000611749.4:ENST00000359883.6:ENST00000447596.4	protein_coding	protein_coding	protein_coding	protein_coding	0	66	2	5.30153	5.47924	5.65695	0.00332518	2.41184e-4	0.0512081	0.0136674
chr2	107728446	107728546	1205834	0	-	0.25	[0,0.28]	chr2	128532	108	INTRON	INTRON	LINC01885:ENSG00000286769	ENSG00000237880.2:ENSG00000286769.1	ENST00000654481.1:ENST00000669817.1	lncRNA	lncRNA	lncRNA	lncRNA	0	68	2	5.47514	5.479105	5.48307	0.00354561	9.62922e-4	0.0529186	0.0285195
chr3	179167778	179167878	1565995	0	+	0.29	(0.28,0.32]	chr3	161904	177	INTRON	INTRON	PIK3CA	ENSG00000121879.6	ENST00000477735.1:ENST00000263967.4:ENST00000643187.1:ENST00000675786.1:ENST00000468036.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	68	2	5.04579	5.4772099999999995	5.90863	0.00714672	7.60626e-5	0.0723634	0.00731806
chr8	140757385	140757485	4077605	0	-	0.24	[0,0.28]	chr8	370429	47	INTRON	INTRON	PTK2	ENSG00000169398.20	ENST00000696786.1:ENST00000522684.5:ENST00000395218.3:ENST00000519654.5:ENST00000521059.5:ENST00000517887.5:ENST00000519465.5:ENST00000519993.5:ENST00000340930.7:ENST00000523539.5:ENST00000519419.5:ENST00000524202.5:ENST00000521986.5:ENST00000521250.5:ENST00000521981.5:ENST00000521029.5:ENST00000520151.5:ENST00000523670.5:ENST00000519024.5:ENST00000523746.5:ENST00000523474.5:ENST00000519899.5:ENST00000519361.5:ENST00000520843.5:ENST00000521172.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	69	2	5.1613	5.47561	5.78992	0.00866441	2.85302e-4	0.0787025	0.0150568
chr3	154277806	154277894	1843046	0	-	0.238636	[0,0.28]	chr3	185355	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	DHX36	ENSG00000174953.14	ENST00000496811.6:ENST00000308361.10:ENST00000495598.1:ENST00000329463.9:ENST00000477549.1:ENST00000479934.5:ENST00000481941.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	172	2	3.90364	5.475	7.04636	5.45367e-4	4.88299e-7	0.0215432	3.7525e-4
chr21	34842099	34842199	7446802	0	-	0.29	(0.28,0.32]	chr21	759836	71	INTRON	INTRON	RUNX1	ENSG00000159216.19	ENST00000300305.7:ENST00000675419.1:ENST00000437180.5:ENST00000344691.8:ENST00000482318.5:ENST00000399240.5:ENST00000358356.9:ENST00000469087.1:ENST00000399237.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	66	2	5.25388	5.474795	5.69571	0.00385849	2.03259e-4	0.0542786	0.0124395
chr16	75057571	75057671	6390005	0	+	0.35	(0.32,0.35]	chr16	614488	103	INTRON	INTRON	ZNRF1	ENSG00000186187.12	ENST00000335325.9:ENST00000320619.10:ENST00000567962.5:ENST00000566250.5:ENST00000564320.1:ENST00000568511.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	64	2	5.42305	5.474335	5.52562	0.00149027	2.76065e-4	0.035	0.0147997
chr20	36767241	36767341	7337813	0	-	0.44	(0.408,0.44]	chr20	747673	4	SS3_PROX	SS3_PROX:INTRON	DSN1	ENSG00000149636.16	ENST00000426836.5:ENST00000373734.8:ENST00000480153.5:ENST00000473615.5:ENST00000373750.9:ENST00000448110.6:ENST00000373740.7:ENST00000447406.1:ENST00000438549.5:ENST00000492703.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	62	2	5.29779	5.474145	5.6505	3.80479e-4	2.70553e-4	0.0176313	0.0150813
chr17	78804378	78804478	6846017	0	-	0.52	(0.515,0.57]	chr17	677384	4	SS3_PROX	SS3_PROX:INTRON	USP36	ENSG00000055483.20	ENST00000589225.5:ENST00000592231.6:ENST00000449938.7:ENST00000542802.7:ENST00000693020.1:ENST00000312010.10:ENST00000588086.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	59	2	5.25183	5.47379	5.69575	2.6074e-4	7.34886e-5	0.014326	0.00767614
chr17	82554846	82554946	6692956	0	+	0.46	(0.44,0.476]	chr17	654627	342	INTRON	INTRON	FOXK2	ENSG00000141568.21	ENST00000473637.6:ENST00000335255.10:ENST00000527313.6:ENST00000570585.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	61	2	5.4462	5.4724900000000005	5.49878	5.83686e-4	1.52058e-4	0.0223753	0.0106137
chr6	12043439	12043539	2814540	0	+	0.54	(0.515,0.57]	chr6	264800	43	INTRON	INTRON	HIVEP1	ENSG00000095951.17	ENST00000491710.5:ENST00000487103.5:ENST00000379388.7:ENST00000627968.2:ENST00000541134.5:ENST00000442081.6:ENST00000478545.1	protein_coding	protein_coding	protein_coding	protein_coding	0	58	2	5.41755	5.4709	5.52425	1.68822e-4	1.1703e-4	0.0119215	0.00929802
chr2	47897900	47898000	1116038	0	-	0.31	(0.28,0.32]	chr2	119694	93	INTRON	INTRON	FBXO11	ENSG00000138081.22	ENST00000684712.1:ENST00000682451.1:ENST00000403359.8:ENST00000683894.1:ENST00000681999.1:ENST00000682975.1:ENST00000684085.1:ENST00000492225.5:ENST00000424163.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	67	2	5.10069	5.470890000000001	5.84109	0.00610574	1.04715e-4	0.0676501	0.00863456
chr17	66715731	66715831	6666440	0	+	0.42	(0.408,0.44]	chr17	650379	120	INTRON	INTRON	PRKCA	ENSG00000154229.12	ENST00000413366.8:ENST00000284384.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	61	2	5.4394	5.46937	5.49934	6.50925e-4	1.5076e-4	0.0232863	0.0106137
chr3	43428712	43428812	1673500	0	-	0.29	(0.28,0.32]	chr3	170966	555	INTRON	INTRON	ANO10	ENSG00000160746.13	ENST00000292246.8:ENST00000350459.8:ENST00000396091.7:ENST00000414522.6:ENST00000451430.6:ENST00000448045.1	protein_coding	protein_coding	protein_coding	protein_coding	0	66	2	5.2046	5.469025	5.73345	0.00448664	1.71668e-4	0.0593175	0.0113605
chr1	92711734	92711833	507434	0	-	0.30303	(0.28,0.32]	chr1	59878	66	INTRON	INTRON	EVI5	ENSG00000067208.16	ENST00000370331.5:ENST00000540033.2:ENST00000684568.2:ENST00000474806.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	66	2	5.30253	5.468685	5.63484	0.00108324	0.0010319	0.0303015	0.0294094
chr10	68074371	68074460	4637944	0	-	0.325843	(0.32,0.35]	chr10	426458	3	SS5_PROX	SS5_PROX:INTRON	HERC4	ENSG00000148634.16	ENST00000373700.9:ENST00000412272.6:ENST00000395198.7:ENST00000473533.6:ENST00000513996.5:ENST00000395185.7:ENST00000505760.5:ENST00000492996.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	64	2	5.2845	5.4683600000000006	5.65222	0.00240071	1.55757e-4	0.0440612	0.0106835
chr9	37439840	37439937	4250760	0	-	0.329897	(0.32,0.35]	chr9	391476	19	UTR3	UTR3:EXON_MRNA	ZBTB5	ENSG00000168795.5	ENST00000307750.5	protein_coding	protein_coding	protein_coding	protein_coding	0	64	2	5.38684	5.46814	5.54944	9.42646e-4	5.01164e-4	0.0280811	0.020217099999999998
chr1	9554305	9554404	17281	0	+	0.424242	(0.408,0.44]	chr1	1576	1	INTRON	INTRON	SLC25A33	ENSG00000171612.7	ENST00000302692.7	protein_coding	protein_coding	protein_coding	protein_coding	0	61	2	5.34548	5.4679649999999995	5.59045	9.40657e-4	9.6776e-5	0.0280776	0.00826486
chr6	166330160	166330247	3262994	0	-	0.425287	(0.408,0.44]	chr6	302938	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SFT2D1	ENSG00000198818.10	ENST00000361731.4:ENST00000487841.5:ENST00000478705.5:ENST00000488773.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	167	2	4.25879	5.4670000000000005	6.67521	1.40976e-6	4.19844e-7	7.75185e-4	3.37394e-4
chr3	179362682	179362782	1567082	0	+	0.52	(0.515,0.57]	chr3	162091	2	SS5_PROX	SS5_PROX:INTRON	MFN1	ENSG00000171109.19	ENST00000471841.6:ENST00000357390.8:ENST00000263969.9:ENST00000489329.5:ENST00000474903.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	59	2	5.10448	5.4643	5.82412	0.0010345	1.29371e-5	0.029231300000000002	0.00266147
chr19	11932572	11932672	7019828	0	+	0.3	(0.28,0.32]	chr19	697884	69	INTRON	INTRON	ZNF700	ENSG00000196757.8	ENST00000622593.4:ENST00000254321.10	protein_coding	protein_coding	protein_coding	protein_coding	0	66	2	5.25141	5.4614899999999995	5.67157	0.00125199	9.48957e-4	0.0328543	0.0281755
chr11	118630030	118630082	4873656	0	+	0.423077	(0.408,0.44]	chr11	455283	2	EXON_LNCRNA	EXON_LNCRNA:INTRON	PHLDB1	ENSG00000019144.20	ENST00000361417.6:ENST00000530994.5:ENST00000600882.6:ENST00000528594.5:ENST00000621027.4:ENST00000356063.9:ENST00000532517.5:ENST00000614369.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	61	2	5.35087	5.4603	5.56973	3.81714e-4	3.00323e-4	0.0181283	0.0155054
chr4	68338884	68338983	2154776	0	-	0.363636	(0.35,0.378]	chr4	212284	1	INTRON	INTRON	YTHDC1	ENSG00000083896.13	ENST00000344157.9:ENST00000355665.7:ENST00000579690.5:ENST00000510746.1	protein_coding	protein_coding	protein_coding	protein_coding	0	68	2	4.79079	5.4602450000000005	6.1297	0.00846427	8.76545e-6	0.0776969	0.00212811
chr17	48934078	48934178	6791660	0	-	0.4	(0.378,0.408]	chr17	670084	2	SS5_PROX	SS5_PROX:INTRON	SNF8	ENSG00000159210.10	ENST00000502492.6:ENST00000510558.6:ENST00000509995.5:ENST00000290330.7:ENST00000514089.5:ENST00000509989.5:ENST00000573795.5:ENST00000576353.5:ENST00000514929.1:ENST00000507302.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	62	2	5.28521	5.45992	5.63463	4.52877e-4	3.59226e-4	0.0192381	0.0175484
chr1	100392423	100392523	173029	0	+	0.36	(0.35,0.378]	chr1	18824	12	INTRON	INTRON	CDC14A	ENSG00000079335.20	ENST00000646665.1:ENST00000644844.1:ENST00000635056.2:ENST00000647005.1:ENST00000647203.1:ENST00000644676.1:ENST00000361544.11:ENST00000370124.8:ENST00000336454.5:ENST00000644813.1:ENST00000455467.6:ENST00000646563.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	208	2	3.72374	5.458795	7.19385	2.64872e-6	1.51516e-7	0.00104389	1.87996e-4
chr16	56400933	56401032	6491026	0	-	0.272727	[0,0.28]	chr16	627689	112	INTRON	INTRON	AMFR	ENSG00000159461.15	ENST00000290649.10:ENST00000492830.5:ENST00000567738.1:ENST00000568762.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	67	2	5.43428	5.4586749999999995	5.48307	0.00400834	9.62922e-4	0.0551303	0.0285195
chr8	100937837	100937936	4005827	0	-	0.575758	(0.57,1]	chr8	366668	29	INTRON	INTRON	YWHAZ	ENSG00000164924.18	ENST00000395958.6:ENST00000395957.6:ENST00000457309.2:ENST00000395956.7:ENST00000353245.7:ENST00000521309.5:ENST00000522542.5:ENST00000395953.6:ENST00000395948.6:ENST00000395951.7:ENST00000419477.6:ENST00000521607.5:ENST00000480304.5:ENST00000518736.5:ENST00000517727.5:ENST00000521328.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	49	2	4.97458	5.4573149999999995	5.94005	2.67728e-4	4.29946e-7	0.0149989	3.43012e-4
chr2	87518966	87519055	826566	0	+	0.561798	(0.515,0.57]	chr2	92451	5	EXON_LNCRNA	EXON_LNCRNA:INTRON	CYTOR:ENSG00000284879	ENSG00000222041.12:ENSG00000284879.1	ENST00000642796.1:ENST00000643589.1:ENST00000642451.1:ENST00000646386.1:ENST00000644478.1:ENST00000409139.6:ENST00000331944.10:ENST00000644125.1:ENST00000643743.1:ENST00000644577.1:ENST00000643276.1:ENST00000409898.2:ENST00000419680.6:ENST00000644976.1:ENST00000643070.1:ENST00000646855.1:ENST00000414584.1:ENST00000455131.5:ENST00000646636.1:ENST00000642293.1:ENST00000423846.5:ENST00000644040.1:ENST00000645138.1:ENST00000437561.2:ENST00000629257.1:ENST00000645729.1:ENST00000413202.1:ENST00000643509.1:ENST00000409054.2:ENST00000643321.1	lncRNA	lncRNA	lncRNA	lncRNA	0	65	2	4.76984	5.456855	6.14387	0.00198034	6.48417e-6	0.0411469	0.00192811
chr12	132580353	132580450	5251717	0	+	0.546392	(0.515,0.57]	chr12	499518	31	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1:ENST00000542306.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	60	2	5.06459	5.456799999999999	5.84901	6.03964e-4	3.33916e-5	0.0223465	0.00487221
chr10	49972762	49972845	4432941	0	+	0.385542	(0.378,0.408]	chr10	408707	1	EXON_LNCRNA	EXON_LNCRNA:SS3_PROX:INTRON	TIMM23B:TIMM23B-AGAP6	ENSG00000204152.14:ENSG00000178440.8	ENST00000478381.5:ENST00000651259.3:ENST00000651763.1:ENST00000651208.1:ENST00000652716.1:ENST00000483296.5:ENST00000429104.1:ENST00000444438.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	61	2	5.37739	5.45519	5.53299	0.0010014	1.47095e-4	0.0288906	0.0105341
chr2	38594134	38594233	1099690	0	-	0.393939	(0.378,0.408]	chr2	117957	21	INTRON	INTRON	HNRNPLL	ENSG00000143889.16	ENST00000449105.8:ENST00000409636.5:ENST00000358367.8:ENST00000608859.5:ENST00000378915.7:ENST00000409328.5:ENST00000410076.5:ENST00000425682.1:ENST00000498516.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	61	2	5.42358	5.45515	5.48672	8.39231e-4	1.83012e-4	0.0266487	0.01176
chr2	43939270	43939370	1110021	0	-	0.19	[0,0.28]	chr2	119016	40	INTRON	INTRON	LRPPRC	ENSG00000138095.20	ENST00000260665.12:ENST00000682308.1:ENST00000683459.1:ENST00000683623.1:ENST00000683125.1:ENST00000683994.1:ENST00000684619.1:ENST00000683833.1:ENST00000682546.1:ENST00000682585.1:ENST00000683220.1:ENST00000683796.1:ENST00000682607.1:ENST00000683590.1:ENST00000684306.1:ENST00000683213.1:ENST00000682779.1:ENST00000682885.1:ENST00000684743.1:ENST00000683346.1:ENST00000683072.1:ENST00000682303.1:ENST00000683329.1:ENST00000682933.1:ENST00000684383.1:ENST00000682480.1:ENST00000684290.1:ENST00000684341.1:ENST00000682595.1:ENST00000683645.1:ENST00000683802.1:ENST00000682845.1:ENST00000684397.1:ENST00000681961.1:ENST00000683694.1:ENST00000683989.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	67	2	5.30424	5.455075	5.60591	0.00584781	6.01442e-4	0.0667594	0.0223465
chr20	50192469	50192568	7285910	0	+	0.333333	(0.32,0.35]	chr20	741236	5	UTR3	UTR3:EXON_MRNA	CEBPB	ENSG00000172216.6	ENST00000303004.5	protein_coding	protein_coding	protein_coding	protein_coding	2	183	2	4.27676	5.454610000000001	6.63246	7.52228e-6	6.74233e-7	0.00206091	4.54793e-4
chr1	113467537	113467637	189484	0	+	0.47	(0.44,0.476]	chr1	20964	632	INTRON	INTRON	MAGI3	ENSG00000081026.19	ENST00000307546.14:ENST00000369617.8:ENST00000369615.5:ENST00000369611.4:ENST00000486456.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	64	2	4.99782	5.453415	5.90901	0.0013223	7.5486e-5	0.0333932	0.00777227
chr14	31020123	31020222	5857811	0	-	0.292929	(0.28,0.32]	chr14	556512	50	INTRON	INTRON	STRN3	ENSG00000196792.12	ENST00000355683.9:ENST00000357479.10:ENST00000555358.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	66	2	5.10069	5.453390000000001	5.80609	0.00610574	1.23223e-4	0.0676501	0.00949625
chr8	129332249	129332349	4058581	0	-	0.29	(0.28,0.32]	chr8	369539	286	INTRON	INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000657400.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1	lncRNA	lncRNA	lncRNA	lncRNA	0	66	2	5.19842	5.4529049999999994	5.70739	0.00152333	8.32651e-4	0.0360297	0.0266389
chr4	39926193	39926274	2131685	0	-	0.395062	(0.378,0.408]	chr4	210229	3	SS3_PROX	SS3_PROX:INTRON	PDS5A	ENSG00000121892.15	ENST00000303538.13:ENST00000503396.5:ENST00000513798.1	protein_coding	protein_coding	protein_coding	protein_coding	1	129	2	4.8043	5.452355	6.10041	4.33573e-5	5.39334e-7	0.00561811	3.95293e-4
chr5	32160760	32160860	2597380	0	-	0.59	(0.57,1]	chr5	246744	165	INTRON	INTRON	GOLPH3	ENSG00000113384.14	ENST00000265070.7:ENST00000503610.5:ENST00000512668.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	47	2	5.20215	5.450715	5.69928	8.28896e-5	2.48853e-6	0.00812487	0.00100001
chr20	2143882	2143981	7221859	0	+	0.323232	(0.32,0.35]	chr20	733806	2	UTR3	UTR3:EXON_MRNA:INTRON	STK35	ENSG00000125834.13	ENST00000381482.8:ENST00000493263.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	63	2	5.33218	5.4506250000000005	5.56907	0.00204346	2.27532e-4	0.04086	0.0133228
chr9	63987279	63987378	4262690	0	-	0.353535	(0.35,0.378]	chr9	392254	6	INTRON	INTRON	ENSG00000204790	ENSG00000204790.9	ENST00000485382.3	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	0	63	2	5.20743	5.44966	5.69189	7.78116e-4	3.71413e-4	0.0256531	0.0178698
chr1	241854072	241854172	344433	0	+	0.45	(0.44,0.476]	chr1	40104	1	SS3_PROX	SS3_PROX:INTRON	EXO1	ENSG00000174371.17	ENST00000366548.8:ENST00000423131.5:ENST00000348581.9:ENST00000518483.5:ENST00000437497.5:ENST00000493702.5:ENST00000469419.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	133	2	4.51461	5.44948	6.38435	7.55571e-6	1.05723e-6	0.00206677	5.88623e-4
chrX	48464739	48464836	7815405	0	-	0.42268	(0.408,0.44]	chrX	796682	14	INTRON	INTRON	SLC38A5	ENSG00000017483.16	ENST00000595796.5:ENST00000619100.4:ENST00000620913.5:ENST00000497336.1:ENST00000494034.5:ENST00000440085.5:ENST00000441948.5:ENST00000413668.5:ENST00000416711.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	124	2	4.32093	5.448115	6.5753	1.15245e-5	2.52667e-6	0.00250519	0.0011145
chr1	246909252	246909351	681732	0	-	0.484848	(0.476,0.515]	chr1	80023	11	INTRON	INTRON	AHCTF1	ENSG00000153207.16	ENST00000648844.2:ENST00000326225.3:ENST00000366508.5	protein_coding	protein_coding	protein_coding	protein_coding	0	60	2	5.31058	5.448015	5.58545	9.15544e-4	1.04881e-4	0.0278396	0.00863456
chr15	85088437	85088537	6090003	0	+	0.34	(0.32,0.35]	chr15	579535	44	INTRON	INTRON	PDE8A	ENSG00000073417.15	ENST00000310298.8:ENST00000557957.5:ENST00000394553.6:ENST00000339708.9:ENST00000478717.5:ENST00000485596.5:ENST00000559742.5:ENST00000559086.5:ENST00000560789.5:ENST00000557819.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	63	2	5.2845	5.44787	5.61124	0.00240071	1.88018e-4	0.0440612	0.011951
chr15	34388748	34388846	6132766	0	-	0.44898	(0.44,0.476]	chr15	584235	4	INTRON	INTRON	GOLGA8A	ENSG00000175265.18	ENST00000359187.5:ENST00000473125.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	66	2	4.76068	5.447785	6.13489	0.00653414	4.97756e-6	0.0699952	0.00151644
chr4	183102621	183102721	2083814	0	+	0.47	(0.44,0.476]	chr4	205959	26	INTRON	INTRON	WWC2	ENSG00000151718.16	ENST00000403733.8:ENST00000508614.5:ENST00000448232.6:ENST00000513834.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	60	2	5.3029	5.446395	5.58989	0.00102616	9.76499e-5	0.029231300000000002	0.00830626
chr17	37617791	37617891	6764135	0	-	0.42	(0.408,0.44]	chr17	665162	1	SS5_PROX	SS5_PROX:INTRON	DDX52	ENSG00000278053.5	ENST00000617633.5:ENST00000616646.4:ENST00000620209.4:ENST00000614307.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	60	2	5.3932	5.44627	5.49934	7.81492e-4	1.5076e-4	0.0257168	0.0106137
chr7	128808135	128808225	3408916	0	+	0.444444	(0.44,0.476]	chr7	318519	2	INTRON	INTRON	CCDC136	ENSG00000128596.17	ENST00000378685.8:ENST00000464832.5:ENST00000297788.9:ENST00000487361.5:ENST00000480137.1:ENST00000494552.5:ENST00000528772.1:ENST00000464672.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	277	2	3.6322	5.4439	7.2556	8.63784e-7	1.98332e-9	5.74603e-4	1.23872e-5
chr4	70954394	70954493	1971028	0	+	0.313131	(0.28,0.32]	chr4	197584	32	INTRON	INTRON	MOB1B	ENSG00000173542.9	ENST00000502869.5:ENST00000509041.5:ENST00000309395.7:ENST00000396051.2:ENST00000511449.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	65	2	5.15358	5.443515	5.73345	0.0052282	1.71668e-4	0.0633615	0.0113605
chr6	135202773	135202847	2962385	0	+	0.310811	(0.28,0.32]	chr6	278652	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MYB	ENSG00000118513.20	ENST00000341911.10:ENST00000442647.7:ENST00000316528.12:ENST00000616088.4:ENST00000339290.9:ENST00000367812.6:ENST00000463282.6:ENST00000525477.5:ENST00000533837.5:ENST00000367814.8:ENST00000527615.5:ENST00000525369.5:ENST00000438901.6:ENST00000525514.5:ENST00000526320.5:ENST00000526889.5:ENST00000529586.5:ENST00000531519.5:ENST00000533808.5:ENST00000528343.5:ENST00000524588.5:ENST00000525002.5:ENST00000525940.5:ENST00000526187.5:ENST00000526565.5:ENST00000528015.5:ENST00000528140.5:ENST00000528345.5:ENST00000528774.5:ENST00000529262.5:ENST00000531634.5:ENST00000531737.5:ENST00000533384.5:ENST00000533624.5:ENST00000534044.5:ENST00000534121.5:ENST00000531845.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	65	2	5.25141	5.443125	5.63484	0.00125199	0.00108324	0.0328543	0.0303015
chr19	43775303	43775395	7188301	0	-	0.434783	(0.408,0.44]	chr19	727630	3	INTRON	INTRON	KCNN4	ENSG00000104783.15	ENST00000648319.1:ENST00000599720.5:ENST00000599107.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	60	2	5.40208	5.44312	5.48416	5.43528e-4	2.37882e-4	0.0215026	0.0136195
chr1	167952161	167952261	248644	0	+	0.37	(0.35,0.378]	chr1	29541	3	SS5_PROX	SS5_PROX:INTRON	DCAF6	ENSG00000143164.16	ENST00000450548.5:ENST00000470919.5:ENST00000432587.6:ENST00000367843.7:ENST00000470721.5:ENST00000367840.4:ENST00000312263.10:ENST00000455334.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	63	2	5.04512	5.440004999999999	5.83489	0.00393262	4.33823e-5	0.0548259	0.00532052
chrX	154741672	154741772	7915226	0	-	0.36	(0.35,0.378]	chrX	806107	250	INTRON	INTRON	GAB3	ENSG00000160219.12	ENST00000496390.5:ENST00000424127.3:ENST00000369575.7:ENST00000369568.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	63	2	5.15016	5.439405	5.72865	9.78549e-4	3.18898e-4	0.0287765	0.016499
chr22	19337427	19337527	7553457	0	-	0.28	[0,0.28]	chr22	772184	55	INTRON	INTRON	HIRA	ENSG00000100084.14	ENST00000263208.5:ENST00000340170.8	protein_coding	protein_coding	protein_coding	protein_coding	0	66	2	5.39222	5.437645	5.48307	0.00453865	9.62922e-4	0.0595107	0.0285195
chr8	70574454	70574550	3966850	0	-	0.25	[0,0.28]	chr8	363907	14	UTR3	UTR3:EXON_MRNA	TRAM1	ENSG00000067167.8	ENST00000262213.7:ENST00000521425.5	protein_coding	protein_coding	protein_coding	protein_coding	0	66	2	5.3489	5.437045	5.52519	0.00514751	8.21427e-4	0.062965	0.0261674
chr5	119131083	119131180	2460374	0	+	0.268041	[0,0.28]	chr5	235644	13	INTRON	INTRON	DMXL1	ENSG00000172869.15	ENST00000539542.6:ENST00000503802.5:ENST00000311085.8:ENST00000504031.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	66	2	5.43428	5.43698	5.43968	0.00400834	0.00113119	0.0551303	0.0308465
chr6	34677953	34678053	3086032	0	-	0.29	(0.28,0.32]	chr6	288696	61	INTRON	INTRON	ILRUN	ENSG00000196821.10	ENST00000374026.7:ENST00000374023.8	protein_coding	protein_coding	protein_coding	protein_coding	0	64	2	5.25388	5.435505	5.61713	0.00385849	2.86819e-4	0.0542786	0.0150568
chr2	97501513	97501613	1183327	0	-	0.32	(0.28,0.32]	chr2	126861	83	INTRON	INTRON	ANKRD36B	ENSG00000196912.13	ENST00000359901.9:ENST00000488634.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	68	2	4.96454	5.43498	5.90542	0.00344078	3.92169e-4	0.0539802	0.0184748
chr14	103136673	103136768	5825461	0	+	0.463158	(0.44,0.476]	chr14	552715	8	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TNFAIP2	ENSG00000185215.11	ENST00000333007.8:ENST00000560869.6:ENST00000559255.1:ENST00000561217.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	62	2	5.06288	5.434675	5.80647	0.00102416	1.22335e-4	0.0294041	0.00993581
chr20	35790801	35790901	7263071	0	+	0.44	(0.408,0.44]	chr20	738060	78	INTRON	INTRON	PHF20	ENSG00000025293.17	ENST00000461122.5:ENST00000461405.1:ENST00000374012.8:ENST00000452270.5:ENST00000374000.8:ENST00000339089.10:ENST00000481202.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	60	2	5.29779	5.4337599999999995	5.56973	3.81714e-4	3.80479e-4	0.0181283	0.0176313
chr7	152825222	152825322	3451183	0	+	0.23	[0,0.28]	chr7	322566	1	SS5_PROX	SS5_PROX:INTRON	ACTR3B	ENSG00000133627.18	ENST00000377776.7:ENST00000256001.13:ENST00000397282.2:ENST00000479402.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	69	2	5.03568	5.433085	5.83049	0.00446141	0.00112548	0.0610799	0.0306963
chr15	89876408	89876507	6257665	0	-	0.373737	(0.35,0.378]	chr15	597081	45	INTRON	INTRON	AP3S2:ARPIN-AP3S2	ENSG00000157823.17:ENSG00000250021.7	ENST00000336418.9:ENST00000398333.7:ENST00000423566.6:ENST00000558011.5:ENST00000560940.5:ENST00000557999.5:ENST00000558806.5:ENST00000559162.5:ENST00000558999.5:ENST00000559629.1:ENST00000558648.5:ENST00000560184.5:ENST00000560224.1:ENST00000560251.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	61	2	5.31058	5.43279	5.555	0.00160599	1.71389e-4	0.0364977	0.0113605
chr18	46815536	46815623	6965695	0	-	0.367816	(0.35,0.378]	chr18	689445	2	SS3_PROX	SS3_PROX:INTRON	PIAS2	ENSG00000078043.16	ENST00000585916.6:ENST00000398654.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	61	2	5.31058	5.43279	5.555	0.00160599	1.71389e-4	0.0364977	0.0113605
chr6	99536373	99536473	2917833	0	+	0.37	(0.35,0.378]	chr6	275834	33	INTRON	INTRON	TSTD3	ENSG00000279170.3	ENST00000623858.2:ENST00000607332.2:ENST00000651400.1:ENST00000652704.1	protein_coding	processed_transcript	protein_coding	processed_transcript	0	61	2	5.31058	5.43279	5.555	0.00160599	1.71389e-4	0.0364977	0.0113605
chr16	89962704	89962783	6423222	0	+	0.240506	[0,0.28]	chr16	616964	2	INTRON	INTRON	DEF8	ENSG00000140995.17	ENST00000617948.4:ENST00000563594.6:ENST00000268676.11:ENST00000569453.5:ENST00000570182.5:ENST00000567874.5:ENST00000561959.5:ENST00000563795.1:ENST00000563805.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	66	2	5.34879	5.4318349999999995	5.51488	0.00314116	0.00157139	0.0500389	0.0365659
chr6	3077417	3077487	2788202	0	+	0.4	(0.378,0.408]	chr6	263306	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RIPK1	ENSG00000137275.16	ENST00000678809.1:ENST00000678874.1:ENST00000380409.3:ENST00000677799.1:ENST00000677261.1:ENST00000676758.1:ENST00000676995.1:ENST00000679118.1:ENST00000479389.1:ENST00000676591.1:ENST00000259808.9:ENST00000676618.1:ENST00000678084.1:ENST00000677361.1:ENST00000676965.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	60	2	5.32968	5.431335	5.53299	0.00119786	1.47095e-4	0.0315806	0.0105341
chr7	72880981	72881080	3329805	0	+	0.383838	(0.378,0.408]	chr7	309555	7	INTRON	INTRON	POM121	ENSG00000196313.13	ENST00000627934.3:ENST00000395270.5	protein_coding	protein_coding	protein_coding	protein_coding	0	60	2	5.32968	5.431335	5.53299	0.00119786	1.47095e-4	0.0315806	0.0105341
chr3	123263666	123263766	1491335	0	+	0.49	(0.476,0.515]	chr3	155784	37	INTRON	INTRON	SEC22A	ENSG00000121542.12	ENST00000492595.6:ENST00000473494.6:ENST00000481965.6:ENST00000309934.4	protein_coding	protein_coding	protein_coding	protein_coding	0	61	2	5.12072	5.431135	5.74155	8.42139e-4	1.47804e-4	0.0263691	0.0111067
chr10	22667465	22667565	4580031	0	-	0.29	(0.28,0.32]	chr10	422040	52	INTRON	INTRON	PIP4K2A	ENSG00000150867.14	ENST00000376573.9:ENST00000545335.5:ENST00000605011.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	64	2	5.30253	5.43049	5.55845	0.00141854	0.0010319	0.0340865	0.0294094
chr8	25443306	25443403	3926193	0	-	0.340206	(0.32,0.35]	chr8	359437	23	INTRON	INTRON	KCTD9	ENSG00000104756.16	ENST00000221200.9:ENST00000519665.5:ENST00000523140.5:ENST00000522493.5:ENST00000518067.5:ENST00000518997.5:ENST00000523294.5:ENST00000521458.5:ENST00000524217.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	62	2	5.37833	5.42958	5.48083	0.00174321	3.35843e-4	0.0375363	0.0162819
chr9	91343433	91343533	4281039	0	-	0.39	(0.378,0.408]	chr9	393806	2	SS3_PROX	SS3_PROX:INTRON	AUH	ENSG00000148090.12	ENST00000303617.5:ENST00000375731.9:ENST00000478465.5:ENST00000475023.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	60	2	5.28033	5.429075	5.57782	0.00143651	1.18586e-4	0.0340925	0.00930884
chr3	10048251	10048351	1362416	0	+	0.38	(0.378,0.408]	chr3	143501	2	SS5_PROX	SS5_PROX:INTRON	FANCD2	ENSG00000144554.13	ENST00000682647.1:ENST00000287647.7:ENST00000676013.1:ENST00000675286.1:ENST00000419585.5:ENST00000681997.1:ENST00000683263.1:ENST00000464934.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	60	2	5.38948	5.428905	5.46833	7.05018e-4	2.85992e-4	0.024224	0.0150568
chr2	175088848	175088948	1271528	0	-	0.35	(0.32,0.35]	chr2	134392	77	INTRON	INTRON	ATF2	ENSG00000115966.18	ENST00000345739.9:ENST00000426833.7:ENST00000264110.7:ENST00000409437.5:ENST00000409635.5:ENST00000435004.6:ENST00000428760.5:ENST00000392544.5:ENST00000417080.5:ENST00000456655.5:ENST00000421438.5:ENST00000429579.5:ENST00000415955.5:ENST00000409499.5:ENST00000478905.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	62	2	5.33218	5.4289000000000005	5.52562	0.00204346	2.76065e-4	0.04086	0.0147997
chr1	1800743	1800842	361924	0	-	0.212121	[0,0.28]	chr1	42263	67	INTRON	INTRON	GNB1	ENSG00000078369.18	ENST00000610897.4:ENST00000615252.4:ENST00000378609.9:ENST00000471354.1:ENST00000439272.6:ENST00000434686.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	66	2	5.21054	5.42759	5.64464	0.00758653	5.16173e-4	0.0749063	0.0203753
chr21	36324585	36324684	7403731	0	+	0.262626	[0,0.28]	chr21	754279	39	INTRON	INTRON	MORC3	ENSG00000159256.13	ENST00000492336.5:ENST00000400485.6:ENST00000487909.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	66	2	5.21054	5.42759	5.64464	0.00758653	5.16173e-4	0.0749063	0.0203753
chr4	70791124	70791224	1970316	0	+	0.28	[0,0.28]	chr4	197525	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	RUFY3	ENSG00000018189.13	ENST00000381006.8:ENST00000226328.8:ENST00000502653.5:ENST00000504805.6:ENST00000512103.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	66	2	5.21054	5.42759	5.64464	0.00758653	5.16173e-4	0.0749063	0.0203753
chr13	99265000	99265100	5525082	0	+	0.28	[0,0.28]	chr13	528241	200	INTRON	INTRON	UBAC2	ENSG00000134882.16	ENST00000355700.9:ENST00000403766.8:ENST00000468067.5:ENST00000473091.5:ENST00000376440.6:ENST00000494576.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	66	2	5.3011	5.4273299999999995	5.55356	0.00278704	0.00185843	0.0469265	0.039946
chr19	9142485	9142584	7011259	0	+	0.313131	(0.28,0.32]	chr19	696234	15	INTRON	INTRON	ZNF317	ENSG00000130803.15	ENST00000247956.11:ENST00000360385.7:ENST00000591278.5:ENST00000419608.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	65	2	5.14341	5.4254	5.70739	0.00185891	8.32651e-4	0.039946	0.0266389
chr1	27600400	27600500	407441	0	-	0.45	(0.44,0.476]	chr1	49026	323	INTRON	INTRON	AHDC1	ENSG00000126705.15	ENST00000247087.10:ENST00000673934.1:ENST00000644989.1:ENST00000374011.6:ENST00000642416.1:ENST00000642245.1:ENST00000643308.1:ENST00000490295.2:ENST00000645669.1:ENST00000480033.3:ENST00000644119.1:ENST00000643219.1:ENST00000646921.1:ENST00000646642.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	162	2	4.22605	5.424519999999999	6.62299	1.64806e-6	5.345e-7	8.57425e-4	3.94695e-4
chr10	131911361	131911461	4536968	0	+	0.43	(0.408,0.44]	chr10	418859	4	SS3_PROX	SS3_PROX:INTRON	PPP2R2D	ENSG00000175470.20	ENST00000455566.6:ENST00000616467.4:ENST00000482010.6:ENST00000470416.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	130	2	4.25101	5.424275	6.59754	3.50592e-5	2.54176e-7	0.00499276	2.46133e-4
chr2	171068269	171068369	1263168	0	-	0.47	(0.44,0.476]	chr2	133896	14	INTRON	INTRON	TLK1	ENSG00000198586.14	ENST00000431350.7:ENST00000360843.7:ENST00000359766.7:ENST00000521943.5:ENST00000409443.6:ENST00000413010.5:ENST00000486857.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	59	2	5.3029	5.42398	5.54506	0.00102616	1.21665e-4	0.029231300000000002	0.00942499
chr22	20119649	20119745	7478611	0	+	0.489583	(0.476,0.515]	chr22	762785	1	INTRON	INTRON	RANBP1	ENSG00000099901.17	ENST00000435265.5:ENST00000432879.5:ENST00000430524.6:ENST00000402752.5:ENST00000488484.1:ENST00000331821.7:ENST00000411892.5:ENST00000416427.5:ENST00000421656.5:ENST00000423859.5:ENST00000418705.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	60	2	5.18039	5.42272	5.66505	6.58744e-4	2.08835e-4	0.0232396	0.0131276
chr17	81255339	81255439	6847698	0	-	0.5	(0.476,0.515]	chr17	677886	17	INTRON	INTRON	SLC38A10	ENSG00000157637.13	ENST00000374759.8:ENST00000542075.5:ENST00000288439.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	59	2	5.34589	5.42228	5.49867	4.28561e-4	3.224e-4	0.0189958	0.0159645
chr2	128171488	128171587	863309	0	+	0.494949	(0.476,0.515]	chr2	96822	2	SS5_PROX	SS5_PROX:INTRON	UGGT1	ENSG00000136731.13	ENST00000259253.11:ENST00000376723.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	59	2	5.34589	5.42228	5.49867	4.28561e-4	3.224e-4	0.0189958	0.0159645
chr5	34657835	34657929	2335446	0	+	0.478723	(0.476,0.515]	chr5	225519	5	INTRON	INTRON	RAI14	ENSG00000039560.14	ENST00000265109.8:ENST00000514527.5:ENST00000510319.5:ENST00000514931.5:ENST00000513974.5:ENST00000512629.5:ENST00000428746.6:ENST00000514873.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	126	2	4.8605	5.42089	5.98128	4.70386e-5	3.39408e-7	0.00593131	2.94567e-4
chr7	140894084	140894184	3663427	0	-	0.43	(0.408,0.44]	chr7	340105	435	INTRON	INTRON	BRAF	ENSG00000157764.14	ENST00000496384.7:ENST00000644969.2:ENST00000646891.1:ENST00000644905.1:ENST00000642228.1:ENST00000288602.11:ENST00000646730.1:ENST00000497784.2:ENST00000642272.1:ENST00000642808.1:ENST00000643790.1:ENST00000469930.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	59	2	5.29612	5.420865	5.54561	0.00113523	1.20601e-4	0.0307488	0.00938389
chr3	49785669	49785756	1694878	0	-	0.344828	(0.32,0.35]	chr3	173824	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	IP6K1	ENSG00000176095.12	ENST00000321599.9:ENST00000395238.5:ENST00000613416.4:ENST00000468463.5:ENST00000460540.1:ENST00000498149.1:ENST00000495152.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	65	2	4.89768	5.420765	5.94385	0.00793135	3.75519e-5	0.076155	0.00490694
chr5	131745090	131745190	2720225	0	-	0.27	[0,0.28]	chr5	255729	4	SS3_PROX	SS3_PROX:INTRON	FNIP1	ENSG00000217128.13	ENST00000510461.6:ENST00000307954.12:ENST00000307968.11:ENST00000511848.1	protein_coding	protein_coding	protein_coding	protein_coding	0	69	2	4.88625	5.41967	5.95309	0.0173315	1.4134e-4	0.104099	0.0102551
chr11	108226633	108226732	4857121	0	+	0.373737	(0.35,0.378]	chr11	453073	37	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	ATM	ENSG00000149311.20	ENST00000683488.1:ENST00000675843.1:ENST00000683174.1:ENST00000527805.6:ENST00000675595.1:ENST00000683468.1:ENST00000532931.5:ENST00000530958.5:ENST00000452508.6:ENST00000683914.1:ENST00000683150.1:ENST00000640388.1:ENST00000639953.1:ENST00000639240.1:ENST00000278616.9:ENST00000526567.5:ENST00000682430.1:ENST00000601453.2:ENST00000684037.1:ENST00000682516.1:ENST00000684061.1:ENST00000684179.1:ENST00000682956.1:ENST00000684029.1:ENST00000682147.1:ENST00000682465.1:ENST00000638443.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	61	2	5.15723	5.41944	5.68165	0.00272706	9.36553e-5	0.0467523	0.00811835
chr22	21597656	21597756	7482004	0	+	0.31	(0.28,0.32]	chr22	763238	43	INTRON	INTRON	UBE2L3	ENSG00000185651.16	ENST00000458578.6:ENST00000545681.2:ENST00000696046.1:ENST00000342192.9:ENST00000496722.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	63	2	5.39235	5.419090000000001	5.44583	0.0024844	5.8721e-4	0.0446195	0.0220073
chr22	20567217	20567317	7479967	0	+	0.29	(0.28,0.32]	chr22	763015	4	SS5_PROX	SS5_PROX:INTRON	MED15	ENSG00000099917.17	ENST00000433831.5:ENST00000292733.11:ENST00000263205.11:ENST00000406969.5:ENST00000382974.6:ENST00000492381.5:ENST00000478831.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	63	2	5.39962	5.41766	5.4357	0.00215368	7.06751e-4	0.0417866	0.0241881
chr7	139401343	139401440	3438012	0	+	0.28866000000000003	(0.28,0.32]	chr7	320347	23	INTRON	INTRON	LUC7L2:FMC1-LUC7L2	ENSG00000146963.18:ENSG00000269955.2	ENST00000541170.7:ENST00000541515.3:ENST00000619796.4:ENST00000354926.9:ENST00000456182.5:ENST00000263545.7:ENST00000463912.5:ENST00000498518.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	64	2	5.10069	5.417070000000001	5.73345	0.00610574	1.71668e-4	0.0676501	0.0113605
chr17	1662553	1662653	6701305	0	-	0.54	(0.515,0.57]	chr17	656012	4	SS3_PROX	SS3_PROX:INTRON	PRPF8	ENSG00000174231.17	ENST00000304992.11:ENST00000572621.5	protein_coding	protein_coding	protein_coding	protein_coding	0	56	2	5.22141	5.41695	5.61249	6.44141e-4	4.24748e-5	0.0231685	0.00526976
chr16	84777010	84777108	6410696	0	+	0.459184	(0.44,0.476]	chr16	615352	14	INTRON	INTRON	USP10	ENSG00000103194.16	ENST00000540269.6:ENST00000219473.12:ENST00000570191.5:ENST00000563048.5:ENST00000569925.1:ENST00000567526.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	59	2	5.1988	5.4160900000000005	5.63338	0.00151532	7.86121e-5	0.0352794	0.00738014
chr16	81467500	81467600	6405224	0	+	0.28	[0,0.28]	chr16	615026	216	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8	protein_coding	protein_coding	protein_coding	protein_coding	0	65	2	5.3489	5.415985	5.48307	0.00514751	9.62922e-4	0.062965	0.0285195
chr3	185666767	185666867	1884753	0	-	0.22	[0,0.28]	chr3	188520	80	INTRON	INTRON	IGF2BP2	ENSG00000073792.16	ENST00000382199.7:ENST00000346192.7:ENST00000457616.6:ENST00000421047.3:ENST00000494906.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	65	2	5.3489	5.415985	5.48307	0.00514751	9.62922e-4	0.062965	0.0285195
chr7	32508171	32508271	3303360	0	+	0.3	(0.28,0.32]	chr7	306758	120	INTRON	INTRON	AVL9	ENSG00000105778.20	ENST00000485228.1:ENST00000318709.9:ENST00000459629.1:ENST00000409301.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	63	2	5.35189	5.41484	5.47779	0.00187048	8.52844e-4	0.0390476	0.0264928
chr9	83977955	83978024	4274326	0	-	0.289855	(0.28,0.32]	chr9	393175	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HNRNPK	ENSG00000165119.21	ENST00000376281.8:ENST00000376263.8:ENST00000351839.7:ENST00000360384.9:ENST00000457156.5:ENST00000472778.5:ENST00000483135.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	63	2	5.35189	5.41484	5.47779	0.00187048	8.52844e-4	0.0390476	0.0264928
chr12	91449246	91449346	5383708	0	-	0.24	[0,0.28]	chr12	513479	495	INTRON	INTRON	ENSG00000289605	ENSG00000289605.1	ENST00000685093.1	lncRNA	lncRNA	lncRNA	lncRNA	0	65	2	5.30424	5.414715	5.52519	0.00584781	8.21427e-4	0.0667594	0.0261674
chr7	116865142	116865241	3385388	0	+	0.373737	(0.35,0.378]	chr7	317031	21	INTRON	INTRON	CAPZA2	ENSG00000198898.15	ENST00000464223.5:ENST00000484325.1:ENST00000414148.6:ENST00000361183.8:ENST00000449080.5:ENST00000639546.1:ENST00000426421.5:ENST00000490693.5:ENST00000417431.5:ENST00000461878.5:ENST00000466023.1:ENST00000464669.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	168	2	4.04214	5.4143	6.78646	2.51283e-6	1.70745e-6	0.00100731	8.76426e-4
chr11	83160631	83160728	4840829	0	+	0.42268	(0.408,0.44]	chr11	451494	19	INTRON	INTRON	PCF11	ENSG00000165494.12	ENST00000298281.8:ENST00000530660.5:ENST00000690938.1:ENST00000530304.5:ENST00000533018.1	protein_coding	protein_coding	protein_coding	protein_coding	0	61	2	5.06343	5.413600000000001	5.76377	0.00101725	1.64089e-4	0.0293497	0.0116917
chr22	19817415	19817515	7555250	0	-	0.42	(0.408,0.44]	chr22	772431	46	INTRON	INTRON	GNB1L	ENSG00000185838.14	ENST00000329517.11:ENST00000403325.5:ENST00000405009.5:ENST00000460402.5:ENST00000481086.1:ENST00000453108.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	59	2	5.29779	5.412685	5.52758	4.54953e-4	3.80479e-4	0.0196892	0.0176313
chr2	55387177	55387277	1124064	0	-	0.18	[0,0.28]	chr2	120560	119	INTRON	INTRON	CCDC88A	ENSG00000115355.18	ENST00000263630.13:ENST00000436346.7:ENST00000336838.10:ENST00000642200.1:ENST00000413716.7:ENST00000643413.1:ENST00000647401.1:ENST00000645311.1:ENST00000646796.1:ENST00000645571.1:ENST00000645477.1:ENST00000645072.1:ENST00000644890.1:ENST00000644630.1:ENST00000647098.1:ENST00000646324.1:ENST00000642890.1:ENST00000647517.1:ENST00000645031.1:ENST00000645484.1:ENST00000645529.1:ENST00000644033.1:ENST00000644193.1:ENST00000645168.1:ENST00000647341.1:ENST00000430086.1:ENST00000644127.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	65	2	5.25815	5.412129999999999	5.56611	0.0066548	7.02173e-4	0.0703807	0.0241881
chr6	135205142	135205241	2962412	0	+	0.353535	(0.35,0.378]	chr6	278661	13	INTRON	INTRON	MYB	ENSG00000118513.20	ENST00000341911.10:ENST00000442647.7:ENST00000316528.12:ENST00000616088.4:ENST00000339290.9:ENST00000367812.6:ENST00000463282.6:ENST00000525477.5:ENST00000533837.5:ENST00000367814.8:ENST00000525369.5:ENST00000438901.6:ENST00000525514.5:ENST00000526320.5:ENST00000526889.5:ENST00000529586.5:ENST00000531519.5:ENST00000533808.5:ENST00000528343.5:ENST00000524588.5:ENST00000525002.5:ENST00000525940.5:ENST00000526187.5:ENST00000526565.5:ENST00000528015.5:ENST00000528140.5:ENST00000528345.5:ENST00000528774.5:ENST00000529262.5:ENST00000531634.5:ENST00000531737.5:ENST00000533384.5:ENST00000533624.5:ENST00000534044.5:ENST00000534121.5:ENST00000531845.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	60	2	5.35828	5.41111	5.46394	0.00135282	2.60035e-4	0.0336321	0.014326
chr9	63988667	63988767	4262704	0	-	0.26	[0,0.28]	chr9	392254	20	INTRON	INTRON	ENSG00000204790	ENSG00000204790.9	ENST00000485382.3	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	0	65	2	5.3011	5.40799	5.51488	0.00314116	0.00185843	0.0500389	0.039946
chr12	70312015	70312115	5167131	0	+	0.29	(0.28,0.32]	chr12	489427	6	INTRON	INTRON	CNOT2	ENSG00000111596.14	ENST00000418359.7:ENST00000552319.5:ENST00000550160.5:ENST00000551661.5:ENST00000551132.5:ENST00000548021.5:ENST00000550641.6:ENST00000229195.8:ENST00000552915.5:ENST00000549443.5:ENST00000552483.5:ENST00000547321.5:ENST00000553020.5:ENST00000548159.5:ENST00000549750.5:ENST00000551043.5:ENST00000548599.5:ENST00000550194.5:ENST00000551873.5:ENST00000547867.5:ENST00000552151.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	70	2	4.66359	5.407305	6.15102	0.0193496	2.27393e-5	0.108861	0.00372337
chr17	48847643	48847723	6624118	0	+	0.4125	(0.408,0.44]	chr17	646449	2	SS3_PROX	SS3_PROX:INTRON	CALCOCO2	ENSG00000136436.15	ENST00000503463.5:ENST00000509507.5:ENST00000448105.6:ENST00000258947.8:ENST00000508679.5:ENST00000416445.6:ENST00000513119.5:ENST00000509415.5:ENST00000570513.5:ENST00000575560.5:ENST00000576582.5:ENST00000505071.5:ENST00000507076.1:ENST00000502761.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	59	2	5.13702	5.406585	5.67615	0.00202889	6.28788e-5	0.04086	0.00658818
chr7	100035495	100035595	3363296	0	+	0.38	(0.378,0.408]	chr7	314249	14	UTR3	UTR3:EXON_MRNA	ZKSCAN1	ENSG00000106261.17	ENST00000535170.5:ENST00000324306.11:ENST00000620510.1	protein_coding	protein_coding	protein_coding	protein_coding	1	122	2	4.54735	5.4045000000000005	6.26165	1.93011e-5	3.0154e-6	0.00356593	0.00111586
chr2	84974044	84974144	820292	0	+	0.59	(0.57,1]	chr2	91419	14	INTRON	INTRON	KCMF1	ENSG00000176407.18	ENST00000456682.1:ENST00000409785.9:ENST00000428691.5:ENST00000453448.1	protein_coding	protein_coding	protein_coding	protein_coding	0	45	2	5.33608	5.404425	5.47277	3.92497e-5	1.12467e-5	0.00533644	0.0024806
chr17	67189882	67189969	6825266	0	-	0.356322	(0.35,0.378]	chr17	674501	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HELZ	ENSG00000198265.12	ENST00000358691.10:ENST00000579953.5:ENST00000580168.5:ENST00000417253.7	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:nonsense_mediated_decay	0	61	2	5.04512	5.40271	5.7603	0.00393262	6.3427e-5	0.0548259	0.00658818
chr19	15252409	15252506	7146585	0	-	0.525773	(0.515,0.57]	chr19	721885	28	INTRON	INTRON	BRD4	ENSG00000141867.19	ENST00000679869.1:ENST00000263377.6:ENST00000371835.8	protein_coding	protein_coding	protein_coding	protein_coding	0	56	2	5.10448	5.40269	5.7009	0.0010345	2.61423e-5	0.029231300000000002	0.00402177
chr1	35271979	35272079	68320	0	+	0.21	[0,0.28]	chr1	8717	25	INTRON	INTRON	ZMYM4	ENSG00000146463.12	ENST00000314607.11:ENST00000441447.1	protein_coding	protein_coding	protein_coding	protein_coding	0	65	2	5.25178	5.4026700000000005	5.55356	0.00278704	0.0022031	0.0469265	0.0435144
chr9	72151580	72151679	4141287	0	+	0.383838	(0.378,0.408]	chr9	377412	15	INTRON	INTRON	GDA	ENSG00000119125.17	ENST00000545168.5:ENST00000238018.8:ENST00000358399.8:ENST00000376986.5:ENST00000475764.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	64	2	4.84627	5.398505	5.95074	0.00254319	8.87003e-5	0.0465056	0.00842626
chr2	69352270	69352369	1146947	0	-	0.363636	(0.35,0.378]	chr2	122477	17	INTRON	INTRON	GFPT1	ENSG00000198380.13	ENST00000361060.5:ENST00000357308.9:ENST00000674507.1:ENST00000674438.1	protein_coding	protein_coding	protein_coding	protein_coding	0	64	2	4.79079	5.398415	6.00604	0.00846427	1.74719e-5	0.0776969	0.00318005
chr19	36545285	36545383	7174616	0	-	0.510204	(0.476,0.515]	chr19	725059	16	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	ZNF529	ENSG00000186020.13	ENST00000452073.2:ENST00000591340.6:ENST00000590656.1:ENST00000334116.7	protein_coding	protein_coding	protein_coding	protein_coding	5	242	2	3.23434	5.39793	7.56152	5.54146e-6	2.71607e-9	0.00163632	1.08938e-5
chr3	158131285	158131385	1538488	0	+	0.29	(0.28,0.32]	chr3	160262	69	INTRON	INTRON	RSRC1	ENSG00000174891.14	ENST00000480820.5:ENST00000494002.5:ENST00000295930.7:ENST00000471994.5:ENST00000683733.1:ENST00000682221.1:ENST00000683831.1:ENST00000683516.1:ENST00000482822.3:ENST00000476899.6:ENST00000464171.5:ENST00000611884.5:ENST00000682164.1:ENST00000684604.1:ENST00000683899.1:ENST00000682500.1:ENST00000684683.1:ENST00000684512.1:ENST00000683394.1:ENST00000684156.1:ENST00000312179.10:ENST00000475278.6:ENST00000480119.5:ENST00000468344.5:ENST00000471911.5:ENST00000683137.1:ENST00000477788.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	63	2	5.19842	5.397785	5.59715	0.00152333	0.00123856	0.0360297	0.0322669
chr1	21680507	21680607	395802	0	-	0.43	(0.408,0.44]	chr1	47195	3	SS5_PROX	SS5_PROX:INTRON	USP48	ENSG00000090686.16	ENST00000400301.5:ENST00000308271.14:ENST00000374732.7:ENST00000479177.1:ENST00000529637.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	58	2	5.24501	5.39531	5.54561	0.00137378	1.20601e-4	0.0336718	0.00938389
chr8	123373979	123374078	4042415	0	-	0.282828	(0.28,0.32]	chr8	368782	9	INTRON	INTRON	ATAD2	ENSG00000156802.13	ENST00000287394.10:ENST00000517666.5:ENST00000521903.5:ENST00000519124.5:ENST00000521496.5:ENST00000530065.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	62	2	5.25388	5.39395	5.53402	0.00385849	4.0843e-4	0.0542786	0.0181306
chr18	13057293	13057388	6877251	0	+	0.357895	(0.35,0.378]	chr18	681449	2	SS3_PROX	SS3_PROX:INTRON	CEP192	ENSG00000101639.19	ENST00000325971.12:ENST00000506447.5:ENST00000589596.5:ENST00000513432.5:ENST00000511820.6:ENST00000510237.5:ENST00000585938.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	60	2	5.10226	5.391955	5.68165	0.00327038	9.36553e-5	0.0508595	0.00811835
chr1	206607159	206607255	624817	0	-	0.197917	[0,0.28]	chr1	74407	13	INTRON	INTRON	EIF2D	ENSG00000143486.16	ENST00000271764.7:ENST00000367114.7:ENST00000613435.1:ENST00000437518.1:ENST00000461334.1:ENST00000620382.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	64	2	5.34879	5.391535	5.43428	0.00400834	0.00157139	0.0551303	0.0365659
chr2	167917743	167917843	1258980	0	-	0.27	[0,0.28]	chr2	133340	166	INTRON	INTRON	B3GALT1-AS1	ENSG00000235335.3	ENST00000430546.2:ENST00000657553.1:ENST00000670221.1:ENST00000436982.2	lncRNA	lncRNA	lncRNA	lncRNA	0	64	2	5.34879	5.391535	5.43428	0.00400834	0.00157139	0.0551303	0.0365659
chr11	71913589	71913688	4975854	0	-	0.424242	(0.408,0.44]	chr11	469940	92	INTRON	INTRON	XNDC1N	ENSG00000254469.10	ENST00000679695.1:ENST00000532852.5:ENST00000679412.2:ENST00000528511.6:ENST00000528560.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	58	2	5.29779	5.390975	5.48416	5.43528e-4	3.80479e-4	0.0215026	0.0176313
chr16	18130864	18130964	6453942	0	-	0.51	(0.476,0.515]	chr16	621960	1271	INTRON	INTRON	ENSG00000259929:ENSG00000260242	ENSG00000259929.5:ENSG00000260242.1	ENST00000567304.1:ENST00000563866.1	lncRNA	lncRNA	lncRNA	lncRNA	0	58	2	5.23769	5.389894999999999	5.5421	5.17244e-4	3.56777e-4	0.0203753	0.0175154
chr3	193628108	193628208	1592217	0	+	0.31	(0.28,0.32]	chr3	164768	2	SS3_PROX	SS3_PROX:INTRON	OPA1	ENSG00000198836.11	ENST00000361828.7:ENST00000361715.6:ENST00000361150.6:ENST00000361908.8:ENST00000361510.8:ENST00000642445.1:ENST00000646277.1:ENST00000644595.1:ENST00000643737.1:ENST00000644841.1:ENST00000392436.7:ENST00000646085.1:ENST00000643329.1:ENST00000646793.1:ENST00000392437.6:ENST00000645553.1:ENST00000642593.1:ENST00000644959.1:ENST00000642289.1:ENST00000646699.1:ENST00000644629.1:ENST00000434811.2:ENST00000497189.5:ENST00000495476.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	63	2	5.14341	5.389125	5.63484	0.00185891	0.00108324	0.039946	0.0303015
chrX	123644274	123644374	7878152	0	-	0.3	(0.28,0.32]	chrX	802514	3	SS5_PROX	SS5_PROX:INTRON	THOC2	ENSG00000125676.20	ENST00000245838.13:ENST00000355725.8:ENST00000491737.5	protein_coding	protein_coding	protein_coding	protein_coding	0	65	2	4.86731	5.387969999999999	5.90863	0.0116253	7.60626e-5	0.0889104	0.00731806
chr10	98134806	98134906	4505547	0	+	0.63	(0.57,1]	chr10	414844	1	SS5_PROX	SS5_PROX:INTRON	R3HCC1L	ENSG00000166024.14	ENST00000370584.7:ENST00000298999.8	protein_coding	protein_coding	protein_coding	protein_coding	0	46	2	5.0481	5.3870450000000005	5.72599	1.32594e-4	3.45794e-6	0.00992554	0.00131943
chr15	28213162	28213241	6122928	0	-	0.379747	(0.378,0.408]	chr15	583196	2	INTRON	INTRON	HERC2	ENSG00000128731.18	ENST00000261609.13	protein_coding	protein_coding	protein_coding	protein_coding	1	132	2	3.90863	5.386075	6.86352	2.19981e-4	5.0964e-8	0.0135522	9.40844e-5
chr13	60079053	60079153	5603524	0	-	0.31	(0.28,0.32]	chr13	535529	359	INTRON	INTRON	DIAPH3	ENSG00000139734.19	ENST00000400324.9:ENST00000377908.6:ENST00000400319.5:ENST00000400320.5:ENST00000267215.8	protein_coding	protein_coding	protein_coding	protein_coding	0	62	2	5.15358	5.385355000000001	5.61713	0.0052282	2.86819e-4	0.0633615	0.0150568
chr18	1279630	1279730	6940974	0	-	0.31	(0.28,0.32]	chr18	686573	4	INTRON	INTRON	LINC00470	ENSG00000132204.14	ENST00000657423.1:ENST00000657618.1:ENST00000584090.5:ENST00000660947.1:ENST00000669242.1:ENST00000660475.1:ENST00000653775.1:ENST00000661931.1:ENST00000412816.7:ENST00000577867.5:ENST00000584492.5:ENST00000667416.1:ENST00000661852.1:ENST00000657919.1:ENST00000661646.1:ENST00000667776.1:ENST00000654559.1:ENST00000661233.1:ENST00000653213.1:ENST00000659094.1:ENST00000660964.1:ENST00000577403.6:ENST00000660358.1:ENST00000669153.1:ENST00000657121.1:ENST00000655957.1:ENST00000659289.1:ENST00000665133.1:ENST00000671558.1:ENST00000666542.1:ENST00000663512.1:ENST00000582862.6:ENST00000578835.5:ENST00000669312.1:ENST00000581430.5:ENST00000581212.1	lncRNA	lncRNA	lncRNA	lncRNA	1	138	2	4.00726	5.385249999999999	6.76324	1.18967e-4	8.45413e-6	0.00932482	0.00222262
chr6	149793769	149793869	2996487	0	+	0.26	[0,0.28]	chr6	280385	1	SS5_PROX	SS5_PROX:INTRON	PCMT1	ENSG00000120265.19	ENST00000367384.7:ENST00000367378.6:ENST00000484601.6:ENST00000367380.9:ENST00000544496.5:ENST00000649295.1:ENST00000464889.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	66	2	4.94561	5.384835000000001	5.82406	0.0150263	2.47093e-4	0.0994339	0.0139149
chr17	62529205	62529305	6653390	0	+	0.35	(0.32,0.35]	chr17	649344	45	INTRON	INTRON	TLK2	ENSG00000146872.19	ENST00000582809.5:ENST00000684213.1:ENST00000583843.5:ENST00000582195.6:ENST00000682085.1:ENST00000580705.5:ENST00000346027.10:ENST00000326270.13:ENST00000682203.1:ENST00000343388.11:ENST00000683536.1:ENST00000684440.1:ENST00000684772.1:ENST00000682274.1:ENST00000682827.1:ENST00000682075.1:ENST00000683104.1:ENST00000684012.1:ENST00000581041.5:ENST00000684553.1:ENST00000683737.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	61	2	5.07629	5.384180000000001	5.69207	0.00468114	1.29349e-4	0.0600108	0.00979769
chr1	55091028	55091127	464587	0	-	0.444444	(0.44,0.476]	chr1	55997	9	INTRON	INTRON	USP24	ENSG00000162402.14	ENST00000294383.7	protein_coding	protein_coding	protein_coding	protein_coding	1	118	2	4.29331	5.384075	6.47484	1.36744e-5	3.88959e-6	0.00275994	0.00142343
chr9	3526465	3526543	4092866	0	+	0.589744	(0.57,1]	chr9	373025	1	EXON_LNCRNA	EXON_LNCRNA	RFX3-DT	ENSG00000232104.4	ENST00000691391.1:ENST00000691026.1	lncRNA	lncRNA	lncRNA	lncRNA	2	106	2	4.00439	5.38349	6.76259	8.29998e-7	3.21731e-10	5.58079e-4	3.22427e-6
chr1	100097781	100097881	515502	0	-	0.34	(0.32,0.35]	chr1	60434	92	INTRON	INTRON	SASS6	ENSG00000156876.10	ENST00000462159.1:ENST00000287482.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	60	2	5.33218	5.38339	5.4346	0.00204346	4.09682e-4	0.04086	0.0181306
chr11	108508461	108508559	5035499	0	-	0.367347	(0.35,0.378]	chr11	474530	32	UTR3	UTR3:EXON_MRNA	EXPH5	ENSG00000110723.12	ENST00000265843.9	protein_coding	protein_coding	protein_coding	protein_coding	0	60	2	5.15016	5.3828	5.61544	9.78549e-4	5.06729e-4	0.0287765	0.020816
chr3	172049444	172049543	1559642	0	+	0.343434	(0.32,0.35]	chr3	161527	21	INTRON	INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000421757.5:ENST00000469491.5:ENST00000336824.8:ENST00000423424.5:ENST00000416957.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	60	2	5.2845	5.382665	5.48083	0.00240071	3.35843e-4	0.0440612	0.0162819
chr2	38306691	38306790	1098623	0	-	0.353535	(0.35,0.378]	chr2	117813	60	INTRON	INTRON	ATL2	ENSG00000119787.14	ENST00000378954.9:ENST00000406122.5:ENST00000405384.6:ENST00000402054.5:ENST00000419554.6:ENST00000651368.1:ENST00000452935.6:ENST00000629272.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	59	2	5.21018	5.38259	5.555	0.00228003	1.71389e-4	0.0426265	0.0113605
chr17	37316653	37316753	6762142	0	-	0.33	(0.32,0.35]	chr17	664944	170	INTRON	INTRON	ACACA	ENSG00000278540.5	ENST00000616317.5:ENST00000614428.4:ENST00000613146.4:ENST00000615229.4:ENST00000621960.1:ENST00000617548.1:ENST00000616352.4:ENST00000614789.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	60	2	5.37833	5.382585000000001	5.38684	0.00174321	5.01164e-4	0.0375363	0.020217099999999998
chr4	56408427	56408527	2151387	0	-	0.38	(0.378,0.408]	chr4	211799	2	INTRON	INTRON	PPAT	ENSG00000128059.8	ENST00000264220.6:ENST00000510643.5:ENST00000507724.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	58	2	5.22924	5.381114999999999	5.53299	0.00172721	1.47095e-4	0.0374701	0.0105341
chr3	101665714	101665808	1758761	0	-	0.393617	(0.378,0.408]	chr3	178394	9	CDS	CDS:UTR3:EXON_MRNA	ZBTB11	ENSG00000066422.6	ENST00000312938.5:ENST00000689142.1:ENST00000690624.1:ENST00000688910.1:ENST00000690651.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	58	2	5.33829	5.380935	5.42358	8.39231e-4	3.59275e-4	0.0266487	0.0169207
chr22	29285828	29285927	7496242	0	+	0.535354	(0.515,0.57]	chr22	764824	29	INTRON	INTRON	EWSR1	ENSG00000182944.18	ENST00000629659.2:ENST00000332050.10:ENST00000397938.7:ENST00000406548.5:ENST00000437155.6:ENST00000415761.5:ENST00000331029.11:ENST00000483415.5:ENST00000414183.6:ENST00000333395.10:ENST00000332035.10:ENST00000455726.5:ENST00000479135.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	55	2	5.10448	5.380929999999999	5.65738	0.0010345	3.32659e-5	0.029231300000000002	0.00461719
chr20	32372852	32372952	7255971	0	+	0.37	(0.35,0.378]	chr20	737076	4	INTRON	INTRON	ASXL1	ENSG00000171456.21	ENST00000651418.1:ENST00000375687.10:ENST00000613218.4:ENST00000644587.1:ENST00000620121.4:ENST00000646985.1:ENST00000643168.1:ENST00000306058.9:ENST00000645688.1:ENST00000470145.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	59	2	5.15723	5.3778500000000005	5.59847	0.00272706	1.39739e-4	0.0467523	0.0101825
chr5	69664455	69664554	2637378	0	-	0.353535	(0.35,0.378]	chr5	250516	180	INTRON	INTRON	GUSBP3	ENSG00000253203.6	ENST00000513408.6:ENST00000509348.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	59	2	5.15723	5.3778500000000005	5.59847	0.00272706	1.39739e-4	0.0467523	0.0101825
chr17	62479913	62480013	6652887	0	+	0.37	(0.35,0.378]	chr17	649293	3	SS5_PROX	SS5_PROX:INTRON	TLK2	ENSG00000146872.19	ENST00000582809.5:ENST00000684213.1:ENST00000583843.5:ENST00000579450.5:ENST00000577616.1:ENST00000582195.6:ENST00000682085.1:ENST00000580705.5:ENST00000346027.10:ENST00000326270.13:ENST00000682203.1:ENST00000343388.11:ENST00000683536.1:ENST00000684440.1:ENST00000684772.1:ENST00000682274.1:ENST00000682827.1:ENST00000583690.6:ENST00000682075.1:ENST00000683104.1:ENST00000684012.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	59	2	5.26251	5.377545	5.49258	8.19894e-4	6.20882e-4	0.0264086	0.0223951
chr11	2982961	2983055	4891904	0	-	0.43617	(0.408,0.44]	chr11	458359	8	INTRON	INTRON	NAP1L4	ENSG00000205531.13	ENST00000620138.4:ENST00000380542.9:ENST00000526115.5:ENST00000532325.6:ENST00000448187.5:ENST00000399614.6:ENST00000430811.5:ENST00000529361.5:ENST00000528968.5:ENST00000530064.5:ENST00000526842.5:ENST00000531291.5:ENST00000455338.6:ENST00000534372.1	protein_coding	protein_coding	protein_coding	protein_coding	2	157	2	4.17966	5.37748	6.5753	2.52667e-6	7.41962e-7	0.0011145	4.83221e-4
chr6	116704571	116704671	2945224	0	+	0.48	(0.476,0.515]	chr6	277223	1	SS3_PROX	SS3_PROX:INTRON	KPNA5	ENSG00000196911.11	ENST00000368564.7:ENST00000356348.6	protein_coding	protein_coding	protein_coding	protein_coding	0	57	2	5.25945	5.376895	5.49434	0.00111445	1.62782e-4	0.0306328	0.0109774
chr1	28904091	28904191	58850	0	+	0.45	(0.44,0.476]	chr1	7617	99	INTRON	INTRON	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000647918.1:ENST00000646800.1:ENST00000644342.1:ENST00000646189.1:ENST00000482464.6:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000646260.1:ENST00000373798.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	57	2	5.35227	5.376894999999999	5.40152	8.47974e-4	2.39829e-4	0.0267232	0.0136403
chr6	169699953	169700052	3267109	0	-	0.444444	(0.44,0.476]	chr6	303259	45	INTRON	INTRON	WDR27	ENSG00000184465.16	ENST00000448612.6:ENST00000648472.1:ENST00000423258.5:ENST00000647790.1:ENST00000647873.1:ENST00000649303.1:ENST00000647889.1:ENST00000648017.1:ENST00000650296.1:ENST00000546953.1:ENST00000649806.1:ENST00000474018.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	57	2	5.35227	5.376894999999999	5.40152	8.47974e-4	2.39829e-4	0.0267232	0.0136403
chr19	808084	808176	6992213	0	+	0.576087	(0.57,1]	chr19	692263	3	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PTBP1	ENSG00000011304.22	ENST00000635647.1:ENST00000627714.2:ENST00000676227.1:ENST00000677277.1:ENST00000349038.8:ENST00000586944.5:ENST00000356948.11:ENST00000394601.8:ENST00000587191.3:ENST00000679114.1:ENST00000350092.8:ENST00000585535.2:ENST00000621737.4:ENST00000585956.5:ENST00000585932.5:ENST00000585856.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	79	2	4.50156	5.376709999999999	6.25186	9.2042e-7	7.04531e-8	5.44557e-4	1.11989e-4
chr1	156330662	156330761	566633	0	-	0.333333	(0.32,0.35]	chr1	68009	52	INTRON	INTRON	CCT3	ENSG00000163468.15	ENST00000295688.8:ENST00000368258.7:ENST00000368259.6:ENST00000368262.7:ENST00000472765.6:ENST00000413555.5:ENST00000496684.6:ENST00000533194.5:ENST00000463132.5:ENST00000446905.5:ENST00000490221.5:ENST00000478640.6:ENST00000415548.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	60	2	5.2863	5.37636	5.46642	0.00127669	7.56575e-4	0.0326395	0.0251966
chr21	21166164	21166264	7380671	0	+	0.42	(0.408,0.44]	chr21	752602	1672	INTRON	INTRON	NCAM2	ENSG00000154654.15	ENST00000400546.6	protein_coding	protein_coding	protein_coding	protein_coding	0	59	2	5.06343	5.376345000000001	5.68926	0.00101725	2.2853e-4	0.0293497	0.0138641
chr1	3851902	3851999	364478	0	-	0.463918	(0.44,0.476]	chr1	42771	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CEP104	ENSG00000116198.14	ENST00000674558.1:ENST00000676052.1:ENST00000378230.8:ENST00000674623.1:ENST00000675200.1:ENST00000674985.1:ENST00000674879.1:ENST00000675677.1:ENST00000675750.1:ENST00000676009.1:ENST00000675108.1:ENST00000675666.1:ENST00000675375.1:ENST00000674544.1:ENST00000428079.6:ENST00000461667.2:ENST00000494653.5:ENST00000675520.1:ENST00000378223.3:ENST00000676046.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	57	2	5.25179	5.375285	5.49878	0.00124521	1.52058e-4	0.0322969	0.0106137
chr2	165874164	165874262	1253133	0	-	0.469388	(0.44,0.476]	chr2	132786	33	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	TTC21B	ENSG00000123607.16	ENST00000392695.6:ENST00000680904.1:ENST00000680888.1:ENST00000680947.1:ENST00000681083.1:ENST00000681024.1:ENST00000680690.1:ENST00000679676.1:ENST00000679967.1:ENST00000679356.1:ENST00000680327.1:ENST00000681502.1:ENST00000681167.1:ENST00000681483.1:ENST00000680657.1:ENST00000679931.1:ENST00000681952.1:ENST00000652557.1:ENST00000679799.1:ENST00000681819.1:ENST00000243344.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	57	2	5.25179	5.375285	5.49878	0.00124521	1.52058e-4	0.0322969	0.0106137
chr18	9186101	9186200	6869425	0	+	0.434343	(0.408,0.44]	chr18	680568	32	INTRON	INTRON	ANKRD12	ENSG00000101745.17	ENST00000585234.5:ENST00000262126.9:ENST00000540578.6:ENST00000581635.5:ENST00000400020.7:ENST00000581758.1:ENST00000546007.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	57	2	5.29612	5.373825	5.45153	0.00113523	1.89064e-4	0.0307488	0.0119565
chr7	140088910	140089010	3659302	0	-	0.29	(0.28,0.32]	chr7	339635	43	UTR3	UTR3:EXON_MRNA	KDM7A	ENSG00000006459.11	ENST00000397560.7:ENST00000472616.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	61	2	5.30153	5.37368	5.44583	0.00332518	5.8721e-4	0.0512081	0.0220073
chr19	34177047	34177146	7050848	0	+	0.282828	(0.28,0.32]	chr19	703187	39	INTRON	INTRON	LSM14A	ENSG00000257103.9	ENST00000544216.8:ENST00000589878.5:ENST00000540746.6:ENST00000433627.9:ENST00000586157.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	61	2	5.35189	5.372120000000001	5.39235	0.0024844	8.52844e-4	0.0446195	0.0264928
chr1	21696716	21696816	395969	0	-	0.44	(0.408,0.44]	chr1	47217	11	INTRON	INTRON	USP48	ENSG00000090686.16	ENST00000400301.5:ENST00000308271.14:ENST00000374732.7:ENST00000529637.5:ENST00000464577.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	57	2	5.35087	5.372035	5.3932	7.81492e-4	3.00323e-4	0.0257168	0.0155054
chr19	15311241	15311341	7147193	0	-	0.44	(0.408,0.44]	chr19	721965	309	INTRON	INTRON	BRD4	ENSG00000141867.19	ENST00000679869.1:ENST00000360016.9:ENST00000594841.5:ENST00000597315.5:ENST00000601941.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	117	2	4.49179	5.371885	6.25198	1.50663e-5	3.94825e-6	0.00311444	0.00131614
chr15	92989255	92989354	6104618	0	+	0.555556	(0.515,0.57]	chr15	581558	32	INTRON	INTRON	CHD2	ENSG00000173575.22	ENST00000626874.2:ENST00000394196.9:ENST00000635856.1:ENST00000637572.1:ENST00000636881.1:ENST00000636306.1:ENST00000637789.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	55	2	5.04225	5.371575	5.7009	0.00131841	2.61423e-5	0.0331539	0.00402177
chr16	23948323	23948423	6324884	0	+	0.29	(0.28,0.32]	chr16	605701	546	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000498739.1	protein_coding	protein_coding	protein_coding	protein_coding	0	62	2	5.04579	5.37075	5.69571	0.00714672	2.03259e-4	0.0723634	0.0124395
chr2	191683464	191683552	960418	0	+	0.215909	[0,0.28]	chr2	104292	3	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	NABP1	ENSG00000173559.15	ENST00000307834.9:ENST00000674262.1:ENST00000674360.1:ENST00000674406.1:ENST00000674414.1:ENST00000410026.7:ENST00000674172.1:ENST00000674187.1:ENST00000307849.7:ENST00000425611.9:ENST00000451500.5:ENST00000409510.5:ENST00000435931.1:ENST00000462824.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	63	2	5.34879	5.370505	5.39222	0.00453865	0.00157139	0.0595107	0.0365659
chr1	34989917	34990016	419979	0	-	0.232323	[0,0.28]	chr1	50548	11	EXON_LNCRNA	EXON_LNCRNA:INTRON	ENSG00000271741:ZMYM6	ENSG00000271741.1:ENSG00000163867.17	ENST00000487874.1:ENST00000357182.9:ENST00000493328.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	64	2	5.05748	5.369915	5.68235	0.0113653	4.43841e-4	0.0886611	0.0190552
chr8	129458493	129458593	4059859	0	-	0.24	[0,0.28]	chr8	369602	12	INTRON	INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1:ENST00000676273.1:ENST00000667643.1:ENST00000668791.1:ENST00000663716.1:ENST00000663572.1:ENST00000676148.1:ENST00000667962.1:ENST00000674877.1:ENST00000675316.1:ENST00000674656.1:ENST00000446592.7:ENST00000667341.1:ENST00000675186.1:ENST00000652971.1:ENST00000661447.1:ENST00000674863.1:ENST00000675498.1:ENST00000675527.1:ENST00000676108.1:ENST00000657647.1:ENST00000675589.1:ENST00000675913.1:ENST00000675109.1:ENST00000671632.1:ENST00000671311.1:ENST00000676099.1:ENST00000660652.1:ENST00000675522.1:ENST00000675183.1:ENST00000658861.1:ENST00000663991.1:ENST00000675044.1:ENST00000675435.1:ENST00000674639.1:ENST00000676069.1:ENST00000675532.1:ENST00000674762.1:ENST00000523151.6:ENST00000675948.1:ENST00000665364.1:ENST00000657251.1:ENST00000675166.1:ENST00000674883.1:ENST00000675867.1:ENST00000674580.1:ENST00000675393.1:ENST00000520048.1:ENST00000674906.1:ENST00000676030.1:ENST00000670588.1:ENST00000675072.1:ENST00000664936.1:ENST00000652914.1:ENST00000657069.1	lncRNA	lncRNA	lncRNA	lncRNA	1	160	2	4.24959	5.368945	6.4883	1.29139e-4	1.08012e-5	0.0103343	0.00241753
chr5	176938936	176939036	2776247	0	-	0.49	(0.476,0.515]	chr5	261526	193	INTRON	INTRON	UIMC1	ENSG00000087206.17	ENST00000377227.8:ENST00000511320.6:ENST00000506128.5:ENST00000512031.5:ENST00000510698.2:ENST00000503273.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	57	2	5.23769	5.36818	5.49867	5.17244e-4	4.28561e-4	0.0203753	0.0189958
chr10	70411830	70411930	4447152	0	+	0.25	[0,0.28]	chr10	410345	69	INTRON	INTRON	EIF4EBP2	ENSG00000148730.7	ENST00000373218.5	protein_coding	protein_coding	protein_coding	protein_coding	0	65	2	4.94561	5.367765	5.78992	0.0150263	2.85302e-4	0.0994339	0.0150568
chr11	46801478	46801553	4948306	0	-	0.453333	(0.44,0.476]	chr11	463808	2	SS3_PROX	SS3_PROX:INTRON	CKAP5	ENSG00000175216.15	ENST00000529230.6:ENST00000312055.9:ENST00000354558.7:ENST00000532321.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	57	2	5.14378	5.366835	5.58989	0.00184943	9.76499e-5	0.0388609	0.00830626
chr1	171521577	171521676	253581	0	+	0.464646	(0.44,0.476]	chr1	30123	34	INTRON	INTRON	PRRC2C	ENSG00000117523.18	ENST00000647382.2:ENST00000367742.7:ENST00000476522.5:ENST00000338920.8:ENST00000426496.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	124	2	4.92433	5.3654	5.80647	1.22335e-4	2.06234e-7	0.00993581	2.15018e-4
chr1	246920370	246920470	681847	0	-	0.27	[0,0.28]	chr1	80043	16	INTRON	INTRON	AHCTF1	ENSG00000153207.16	ENST00000648844.2:ENST00000326225.3:ENST00000366508.5	protein_coding	protein_coding	protein_coding	protein_coding	0	63	2	5.25178	5.36346	5.47514	0.00354561	0.0022031	0.0529186	0.0435144
chr19	52210459	52210559	7094468	0	+	0.44	(0.408,0.44]	chr19	711187	40	INTRON	INTRON	PPP2R1A	ENSG00000105568.18	ENST00000490868.5:ENST00000454220.6:ENST00000322088.11:ENST00000468280.5:ENST00000462990.5:ENST00000495876.5:ENST00000473455.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	57	2	5.24267	5.363415	5.48416	5.43528e-4	4.83767e-4	0.0215026	0.0199261
chr16	88629444	88629534	6418873	0	+	0.355556	(0.35,0.378]	chr16	615865	2	INTRON	INTRON	ZC3H18	ENSG00000158545.16	ENST00000301011.10:ENST00000452588.6:ENST00000564341.1:ENST00000566496.5:ENST00000565583.1:ENST00000566317.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	58	2	5.31058	5.363365	5.41615	0.00160599	3.21724e-4	0.0364977	0.0159645
chr22	47836335	47836434	7541424	0	+	0.484848	(0.476,0.515]	chr22	770774	54	INTRON	INTRON	ENSG00000224271	ENSG00000224271.7	ENST00000664761.1:ENST00000650683.1:ENST00000651536.1:ENST00000652656.1:ENST00000651445.1:ENST00000423737.5:ENST00000650660.1:ENST00000651056.1:ENST00000652611.1:ENST00000652399.1:ENST00000652123.1:ENST00000652505.1:ENST00000652030.2:ENST00000651403.1:ENST00000652228.1:ENST00000651124.1:ENST00000651003.1:ENST00000651948.2:ENST00000651293.1:ENST00000651939.1:ENST00000650787.1:ENST00000651517.1:ENST00000651638.1:ENST00000670853.1:ENST00000652080.1:ENST00000651294.1:ENST00000652164.1:ENST00000651538.1:ENST00000651033.1:ENST00000651584.1	lncRNA	lncRNA	lncRNA	lncRNA	0	57	2	5.18039	5.361245	5.5421	6.58744e-4	3.56777e-4	0.0232396	0.0175154
chrX	19357227	19357304	7629331	0	+	0.480519	(0.476,0.515]	chrX	781200	2	SS3_PROX	SS3_PROX:INTRON	PDHA1	ENSG00000131828.14	ENST00000540249.5:ENST00000696704.1:ENST00000696705.1:ENST00000422285.7:ENST00000423505.6:ENST00000355808.10:ENST00000379805.4:ENST00000417819.6:ENST00000481733.2:ENST00000379804.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	57	2	5.18039	5.361245	5.5421	6.58744e-4	3.56777e-4	0.0232396	0.0175154
chr14	49670098	49670195	5886322	0	-	0.494845	(0.476,0.515]	chr14	558602	1	INTRON	INTRON	POLE2	ENSG00000100479.13	ENST00000216367.10:ENST00000539565.6:ENST00000556584.5:ENST00000554396.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	116	2	4.30769	5.360925	6.41416	1.28603e-5	4.70143e-6	0.00266147	0.00158989
chr10	21547433	21547533	4404541	0	+	0.45	(0.44,0.476]	chr10	406427	57	INTRON	INTRON	MLLT10	ENSG00000078403.17	ENST00000651097.1:ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000377100.8:ENST00000377091.7:ENST00000650772.1:ENST00000651298.1:ENST00000652497.1:ENST00000495130.5:ENST00000377059.7:ENST00000621220.4:ENST00000476557.5:ENST00000462999.5:ENST00000430455.2:ENST00000479634.1:ENST00000480415.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	58	2	4.96491	5.3607	5.75649	0.0034249	4.17314e-5	0.0517761	0.00523306
chr16	89875249	89875345	6422449	0	+	0.375	(0.35,0.378]	chr16	616715	1	INTRON	INTRON	TCF25	ENSG00000141002.20	ENST00000640279.1:ENST00000263347.11:ENST00000263346.13:ENST00000561585.1:ENST00000561958.5:ENST00000614813.4:ENST00000565196.5:ENST00000564652.5:ENST00000568412.5:ENST00000563406.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	58	2	5.31556	5.360004999999999	5.40445	0.00114224	4.97087e-4	0.0307966	0.0201536
chr15	66526398	66526495	6050533	0	+	0.381443	(0.378,0.408]	chr15	576158	23	INTRON	INTRON	ZWILCH	ENSG00000174442.12	ENST00000535141.6:ENST00000613446.4:ENST00000446801.6:ENST00000565627.5:ENST00000307897.10:ENST00000561583.5:ENST00000562645.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	57	2	5.28033	5.359625	5.43892	0.00143651	2.28412e-4	0.0340925	0.0133228
chr16	70569417	70569505	6385630	0	+	0.329545	(0.32,0.35]	chr16	613999	3	SS5_PROX	SS5_PROX:INTRON	SF3B3	ENSG00000189091.13	ENST00000302516.10	protein_coding	protein_coding	protein_coding	protein_coding	0	59	2	5.33218	5.35951	5.38684	0.00204346	5.01164e-4	0.04086	0.020217099999999998
chrX	101046852	101046952	7855232	0	-	0.57	(0.515,0.57]	chrX	800835	28	INTRON	INTRON	TRMT2B:TRMT2B-AS1	ENSG00000188917.15:ENSG00000225839.2	ENST00000545398.5:ENST00000372936.4:ENST00000372939.5:ENST00000372935.5:ENST00000478422.1:ENST00000443801.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA:processed_transcript	2	148	2	3.83027	5.359465	6.88866	9.0334e-6	8.10109e-9	0.00231495	3.10197e-5
chr15	72487999	72488099	6059297	0	+	0.44	(0.408,0.44]	chr15	576852	126	INTRON	INTRON	ARIH1	ENSG00000166233.15	ENST00000379887.9:ENST00000570085.5:ENST00000564062.1:ENST00000567762.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	116	2	4.49179	5.3588249999999995	6.22586	1.7283e-5	3.94825e-6	0.00333191	0.00131614
chr11	117245931	117246025	4869569	0	+	0.393617	(0.378,0.408]	chr11	454506	10	INTRON	INTRON	RNF214	ENSG00000167257.11	ENST00000300650.9:ENST00000529869.1:ENST00000531452.5:ENST00000531287.5:ENST00000530849.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	57	2	5.33829	5.3578399999999995	5.37739	0.0010014	3.59275e-4	0.0288906	0.0169207
chr9	131183180	131183279	4216221	0	+	0.464646	(0.44,0.476]	chr9	386630	44	INTRON	INTRON	NUP214	ENSG00000126883.19	ENST00000695497.1:ENST00000695498.1:ENST00000695496.1:ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000525980.5:ENST00000526346.5:ENST00000531929.5:ENST00000651334.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	168	2	4.05184	5.356625	6.66141	4.11e-6	1.6547e-7	0.00146847	1.8594e-4
chr1	54345947	54346047	463155	0	-	0.43	(0.408,0.44]	chr1	55780	102	INTRON	INTRON	SSBP3	ENSG00000157216.16	ENST00000610401.5:ENST00000357475.9:ENST00000371319.8:ENST00000417664.7:ENST00000533946.6:ENST00000326956.12:ENST00000371320.8:ENST00000525990.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	57	2	5.18536	5.35647	5.52758	6.17381e-4	4.54953e-4	0.0223951	0.0196892
chr1	112655466	112655565	186692	0	+	0.252525	[0,0.28]	chr1	20663	4	INTRON	INTRON	CAPZA1	ENSG00000116489.13	ENST00000476936.5:ENST00000263168.4:ENST00000498626.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	159	2	3.73812	5.35515	6.97218	0.00103473	7.54048e-7	0.029231300000000002	4.87215e-4
chr7	10726704	10726804	3484047	0	-	0.51	(0.476,0.515]	chr7	325772	1648	INTRON	INTRON	MGC4859	ENSG00000283117.1	ENST00000634803.1	lncRNA	lncRNA	lncRNA	lncRNA	0	56	2	5.31058	5.353835	5.39709	9.15544e-4	2.55871e-4	0.0278396	0.0142249
chr10	21554966	21555064	4404618	0	+	0.520408	(0.515,0.57]	chr10	406433	27	INTRON	INTRON	MLLT10	ENSG00000078403.17	ENST00000651097.1:ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000377100.8:ENST00000377091.7:ENST00000650772.1:ENST00000651298.1:ENST00000652497.1:ENST00000495130.5:ENST00000377059.7:ENST00000621220.4:ENST00000476557.5:ENST00000462999.5:ENST00000430455.2:ENST00000479634.1:ENST00000480415.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	111	2	4.3876	5.3533550000000005	6.31911	8.75303e-6	5.57818e-7	0.00227522	4.00823e-4
chr1	155755967	155756065	563403	0	-	0.367347	(0.35,0.378]	chr1	67239	11	INTRON	INTRON	GON4L	ENSG00000116580.20	ENST00000368331.6:ENST00000615926.4:ENST00000437809.5:ENST00000271883.9:ENST00000460075.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	59	2	5.09052	5.3529800000000005	5.61544	0.00123501	5.06729e-4	0.0326215	0.020816
chr16	23588904	23589003	6465172	0	-	0.484848	(0.476,0.515]	chr16	624016	12	INTRON	INTRON	NDUFAB1	ENSG00000004779.10	ENST00000007516.8:ENST00000562133.5:ENST00000484769.1:ENST00000570319.5:ENST00000567761.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	57	2	5.12072	5.352485	5.58425	8.42139e-4	2.97744e-4	0.0263691	0.0160246
chr1	1406257	1406350	359970	0	-	0.591398	(0.57,1]	chr1	41824	5	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	MRPL20	ENSG00000242485.6	ENST00000344843.12:ENST00000487659.1:ENST00000493287.5:ENST00000492508.1:ENST00000482352.1:ENST00000477686.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	44	2	5.12813	5.34986	5.57159	8.62401e-5	9.47307e-6	0.00783027	0.00236268
chr1	50736763	50736863	450016	0	-	0.22	[0,0.28]	chr1	54237	305	INTRON	INTRON	FAF1	ENSG00000185104.21	ENST00000396153.7:ENST00000487898.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	62	2	5.30424	5.349595	5.39495	0.00584781	0.00133175	0.0667594	0.0335129
chr1	77654628	77654728	493183	0	-	0.38	(0.378,0.408]	chr1	58315	126	INTRON	INTRON	ZZZ3	ENSG00000036549.13	ENST00000370801.8:ENST00000370798.5:ENST00000433749.5:ENST00000414381.5:ENST00000463166.5:ENST00000469944.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	57	2	5.12128	5.34955	5.57782	0.00251746	1.18586e-4	0.0446195	0.00930884
chr1	9736997	9737097	374562	0	-	0.54	(0.515,0.57]	chr1	43724	1	SS5_PROX	SS5_PROX:INTRON	CLSTN1	ENSG00000171603.18	ENST00000377298.9:ENST00000650348.1:ENST00000361311.4:ENST00000435891.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	54	2	5.12974	5.349405	5.56907	4.54392e-4	1.36543e-4	0.0192381	0.0106702
chr14	96810856	96810956	5810989	0	+	0.31	(0.28,0.32]	chr14	551001	107	INTRON	INTRON	VRK1	ENSG00000100749.9	ENST00000553683.2:ENST00000680538.1:ENST00000555351.2:ENST00000681195.1:ENST00000681524.1:ENST00000680084.1:ENST00000679533.1:ENST00000681598.1:ENST00000679727.1:ENST00000679758.1:ENST00000680509.1:ENST00000557222.6:ENST00000679977.1:ENST00000680387.1:ENST00000680335.1:ENST00000680683.1:ENST00000681474.1:ENST00000216639.8:ENST00000681363.1:ENST00000681538.1:ENST00000679736.1:ENST00000681176.1:ENST00000680922.1:ENST00000679903.1:ENST00000557352.2:ENST00000681101.1:ENST00000681419.1:ENST00000680348.1:ENST00000679941.1:ENST00000679452.1:ENST00000680849.1:ENST00000679770.1:ENST00000681493.1:ENST00000681778.1:ENST00000680993.1:ENST00000681355.1:ENST00000681695.1:ENST00000681344.1:ENST00000680007.1:ENST00000679918.1:ENST00000681785.1:ENST00000679816.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	62	2	5.02666	5.349114999999999	5.67157	0.0027935	9.48957e-4	0.0488769	0.0281755
chr14	73303155	73303254	5917744	0	-	0.414141	(0.408,0.44]	chr14	562223	39	INTRON	INTRON	NUMB	ENSG00000133961.21	ENST00000554546.5:ENST00000535282.5:ENST00000359560.7:ENST00000355058.7:ENST00000544991.7:ENST00000555238.6:ENST00000557597.5:ENST00000356296.8:ENST00000555394.5:ENST00000559312.5:ENST00000560335.5:ENST00000555738.6:ENST00000554521.6:ENST00000555859.5:ENST00000554394.5:ENST00000555307.5:ENST00000554315.5:ENST00000555987.5:ENST00000556112.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	56	2	5.29612	5.3491	5.40208	0.00113523	2.37882e-4	0.0307488	0.0136195
chr8	28891399	28891484	3724864	0	+	0.458824	(0.44,0.476]	chr8	346244	2	UTR5	UTR5:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HMBOX1	ENSG00000147421.18	ENST00000287701.15:ENST00000558662.5:ENST00000519662.5:ENST00000397358.7:ENST00000560599.5:ENST00000523613.5:ENST00000560357.5:ENST00000521516.5:ENST00000519047.5:ENST00000560269.1:ENST00000355231.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	56	2	5.29723	5.348615000000001	5.4	7.02611e-4	3.83422e-4	0.024224	0.017699199999999998
chr9	131445120	131445217	4217486	0	+	0.474227	(0.44,0.476]	chr9	386752	4	INTRON	INTRON	PRRC2B	ENSG00000288701.1	ENST00000684596.1:ENST00000683519.1:ENST00000682501.1	protein_coding	protein_coding	protein_coding	protein_coding	0	56	2	5.29723	5.348615000000001	5.4	7.02611e-4	3.83422e-4	0.024224	0.017699199999999998
chr12	111453031	111453127	5411732	0	-	0.427083	(0.408,0.44]	chr12	516792	3	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	ATXN2	ENSG00000204842.18	ENST00000642389.2:ENST00000608853.5:ENST00000672613.1:ENST00000673436.1:ENST00000643669.2:ENST00000389154.7:ENST00000616825.4:ENST00000389153.10:ENST00000550104.5:ENST00000483311.6:ENST00000672335.1:ENST00000484991.1:ENST00000647445.1:ENST00000482777.5:ENST00000492467.6:ENST00000673557.1:ENST00000673283.1:ENST00000673273.1:ENST00000673449.1:ENST00000535949.5:ENST00000542287.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	57	2	5.02028	5.348215	5.67615	0.00303216	6.28788e-5	0.0493883	0.00658818
chr5	39023435	39023535	2605138	0	-	0.42	(0.408,0.44]	chr5	247896	19	INTRON	INTRON	RICTOR	ENSG00000164327.13	ENST00000357387.8:ENST00000511516.5:ENST00000296782.9:ENST00000510711.5:ENST00000513566.1:ENST00000514735.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	57	2	5.02028	5.348215	5.67615	0.00303216	6.28788e-5	0.0493883	0.00658818
chr7	22618920	22619020	3499560	0	-	0.23	[0,0.28]	chr7	326644	458	INTRON	INTRON	STEAP1B	ENSG00000105889.16	ENST00000439708.1:ENST00000442252.1:ENST00000650428.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	62	2	5.21054	5.346805	5.48307	0.00758653	9.62922e-4	0.0749063	0.0285195
chr1	171498893	171498993	253348	0	+	0.48	(0.476,0.515]	chr1	30096	128	INTRON	INTRON	PRRC2C	ENSG00000117523.18	ENST00000647382.2:ENST00000367742.7:ENST00000476522.5:ENST00000338920.8:ENST00000467601.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	56	2	5.23769	5.345795	5.4539	5.17244e-4	5.16081e-4	0.0208667	0.0203753
chr18	723053	723151	6939797	0	-	0.408163	(0.378,0.408]	chr18	686450	16	UTR3	UTR3:EXON_MRNA	YES1	ENSG00000176105.14	ENST00000584307.5:ENST00000314574.5:ENST00000577961.5	protein_coding	protein_coding	protein_coding	protein_coding	1	117	2	4.26113	5.34531	6.42949	1.77623e-5	7.97499e-6	0.00320912	0.00213244
chr16	12054872	12054971	6292107	0	+	0.333333	(0.32,0.35]	chr16	602404	17	INTRON	INTRON	SNX29	ENSG00000048471.14	ENST00000566228.6:ENST00000563308.1	protein_coding	protein_coding	protein_coding	protein_coding	0	59	2	5.07629	5.343764999999999	5.61124	0.00468114	1.88018e-4	0.0600108	0.011951
chr13	95172522	95172622	5638575	0	-	0.43	(0.408,0.44]	chr13	537099	15	INTRON	INTRON	ABCC4	ENSG00000125257.16	ENST00000645237.2:ENST00000643051.1:ENST00000643842.1:ENST00000646439.1:ENST00000643816.1:ENST00000536256.3:ENST00000643556.1:ENST00000629385.1:ENST00000642524.1:ENST00000645532.1:ENST00000644471.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	123	2	4.08856	5.34305	6.59754	8.21424e-5	2.54176e-7	0.00812487	2.46133e-4
chr10	17448962	17449062	4568962	0	-	0.18	[0,0.28]	chr10	421387	580	INTRON	INTRON	ST8SIA6	ENSG00000148488.17	ENST00000377602.5:ENST00000648997.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	62	2	5.25178	5.343030000000001	5.43428	0.00400834	0.0022031	0.0551303	0.0435144
chr2	15431584	15431684	1071850	0	-	0.25	[0,0.28]	chr2	114368	34	INTRON	INTRON	NBAS	ENSG00000151779.13	ENST00000281513.10	protein_coding	protein_coding	protein_coding	protein_coding	0	62	2	5.25178	5.343030000000001	5.43428	0.00400834	0.0022031	0.0551303	0.0435144
chr1	202149635	202149722	619611	0	-	0.37931	(0.378,0.408]	chr1	73439	6	INTRON	INTRON	PTPN7	ENSG00000143851.16	ENST00000309017.8:ENST00000367279.8:ENST00000495688.5:ENST00000691036.1:ENST00000462815.5:ENST00000496197.5:ENST00000480836.5:ENST00000477554.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	58	2	5.05091	5.34277	5.63463	0.00118558	3.59226e-4	0.031662	0.0175484
chr12	64443681	64443780	5153302	0	+	0.484848	(0.476,0.515]	chr12	487839	40	INTRON	INTRON	XPOT	ENSG00000184575.12	ENST00000332707.10	protein_coding	protein_coding	protein_coding	protein_coding	0	57	2	4.97253	5.34234	5.71215	0.00311573	5.54639e-5	0.0498063	0.00609037
chr20	35729111	35729211	7336417	0	-	0.3	(0.28,0.32]	chr20	747463	4	SS5_PROX	SS5_PROX:INTRON	RBM39	ENSG00000131051.24	ENST00000253363.11:ENST00000639702.1:ENST00000656873.1:ENST00000463004.5:ENST00000361162.10:ENST00000461283.5:ENST00000403542.6:ENST00000338163.10:ENST00000528062.7:ENST00000429968.5:ENST00000444878.5:ENST00000665058.1:ENST00000492779.5:ENST00000448303.5:ENST00000374038.7:ENST00000412738.5:ENST00000434927.5:ENST00000425184.5:ENST00000481037.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	61	2	4.98872	5.3422149999999995	5.69571	0.00838468	2.03259e-4	0.0774402	0.0124395
chr1	45829781	45829881	94075	0	+	0.37	(0.35,0.378]	chr1	12695	2	SS5_PROX	SS5_PROX:INTRON	MAST2	ENSG00000086015.23	ENST00000470809.1:ENST00000361297.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	59	2	4.92355	5.341925	5.7603	0.00573514	6.3427e-5	0.0657377	0.00658818
chr11	61304235	61304335	4956188	0	-	0.42	(0.408,0.44]	chr11	465676	2	SS3_PROX	SS3_PROX:INTRON	DDB1	ENSG00000167986.15	ENST00000301764.12:ENST00000680367.1:ENST00000681803.1:ENST00000680717.1:ENST00000679712.1:ENST00000680357.1:ENST00000680075.1:ENST00000679588.1:ENST00000680602.1:ENST00000680881.1:ENST00000681188.1:ENST00000535283.6:ENST00000680452.1:ENST00000681935.1:ENST00000680250.1:ENST00000680959.1:ENST00000540166.5:ENST00000679855.1:ENST00000539332.2:ENST00000681368.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	56	2	5.13702	5.341315	5.54561	0.00202889	1.20601e-4	0.04086	0.00938389
chr11	67197441	67197540	4813235	0	+	0.434343	(0.408,0.44]	chr11	448134	152	INTRON	INTRON	KDM2A	ENSG00000173120.15	ENST00000529006.7:ENST00000398645.6:ENST00000308783.9	protein_coding	protein_coding	protein_coding	protein_coding	0	56	2	5.13702	5.341315	5.54561	0.00202889	1.20601e-4	0.04086	0.00938389
chr17	76401563	76401654	6842605	0	-	0.516484	(0.515,0.57]	chr17	676826	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	UBE2O	ENSG00000175931.13	ENST00000319380.12:ENST00000586409.5:ENST00000590658.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	53	2	5.16413	5.34122	5.51831	8.14815e-4	6.99834e-5	0.0263656	0.00692586
chr5	111107939	111108036	2451295	0	+	0.350515	(0.35,0.378]	chr5	234839	1	INTRON	INTRON	WDR36	ENSG00000134987.13	ENST00000505303.5:ENST00000513710.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	57	2	5.31058	5.338654999999999	5.3667299999999996	0.00160599	3.99274e-4	0.0364977	0.0179401
chr6	44155428	44155519	2872645	0	+	0.252747	[0,0.28]	chr6	272499	7	UTR3	UTR3:EXON_MRNA	TMEM63B	ENSG00000137216.19	ENST00000259746.13:ENST00000323267.11:ENST00000371893.6:ENST00000533121.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	62	2	5.11033	5.33822	5.56611	0.00991388	7.02173e-4	0.0838372	0.0241881
chr6	140286039	140286139	2969316	0	+	0.29	(0.28,0.32]	chr6	279015	1370	INTRON	INTRON	ENSG00000288714	ENSG00000288714.1	ENST00000683950.1	lncRNA	lncRNA	lncRNA	lncRNA	0	60	2	5.19842	5.338105	5.47779	0.00187048	0.00152333	0.0390476	0.0360297
chr6	37332270	37332370	2856068	0	+	0.59	(0.57,1]	chr6	270012	12	UTR3	UTR3:EXON_MRNA	TBC1D22B	ENSG00000065491.8	ENST00000373491.3	protein_coding	protein_coding	protein_coding	protein_coding	0	43	2	5.27601	5.3373349999999995	5.39866	3.73525e-5	2.7267e-5	0.00489903	0.00430583
chr17	1452787	1452887	6699937	0	-	0.41	(0.408,0.44]	chr17	655571	153	INTRON	INTRON	CRK	ENSG00000167193.8	ENST00000398970.5:ENST00000300574.3:ENST00000574295.1:ENST00000572145.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	57	2	5.06343	5.337055	5.61068	0.00101725	3.21002e-4	0.0293497	0.0165409
chr6	20410529	20410629	2827534	0	+	0.4	(0.378,0.408]	chr6	265575	63	INTRON	INTRON	E2F3	ENSG00000112242.16	ENST00000346618.8:ENST00000535432.2	protein_coding	protein_coding	protein_coding	protein_coding	4	211	2	3.47036	5.33523	7.2001	3.13246e-6	8.25709e-8	0.00114282	1.24919e-4
chr16	89503244	89503343	6420281	0	+	0.525253	(0.515,0.57]	chr16	616180	41	INTRON	INTRON	SPG7	ENSG00000197912.16	ENST00000647079.1	protein_coding	protein_coding	protein_coding	protein_coding	0	53	2	5.19208	5.3350349999999995	5.47799	3.4344e-4	2.09356e-4	0.0164987	0.0131276
chr19	19406618	19406718	7035355	0	+	0.52	(0.515,0.57]	chr19	701433	2	INTRON	INTRON	GATAD2A	ENSG00000167491.18	ENST00000494516.6:ENST00000360315.7:ENST00000609040.5:ENST00000417582.6:ENST00000683918.1:ENST00000448576.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	53	2	5.19208	5.3350349999999995	5.47799	3.4344e-4	2.09356e-4	0.0164987	0.0131276
chr7	23194593	23194689	3289758	0	+	0.541667	(0.515,0.57]	chr7	305557	3	EXON_MRNA	EXON_MRNA:INTRON	NUP42	ENSG00000136243.18	ENST00000485250.5:ENST00000438012.5:ENST00000258742.10:ENST00000487595.5:ENST00000413919.1:ENST00000437140.5:ENST00000486136.5:ENST00000477844.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	53	2	5.19208	5.3350349999999995	5.47799	3.4344e-4	2.09356e-4	0.0164987	0.0131276
chr2	151796101	151796200	1243411	0	-	0.343434	(0.32,0.35]	chr2	132026	38	INTRON	INTRON	ARL5A	ENSG00000162980.17	ENST00000446896.7	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	0	58	2	5.2352	5.334899999999999	5.4346	0.0028268	4.09682e-4	0.0472361	0.0181306
chr2	161339332	161339432	901421	0	+	0.33	(0.32,0.35]	chr2	99704	201	INTRON	INTRON	PSMD14	ENSG00000115233.12	ENST00000409682.8:ENST00000437630.1	protein_coding	protein_coding	protein_coding	protein_coding	0	60	2	4.89768	5.33314	5.7686	0.00793135	8.9843e-5	0.076155	0.0079464
chr2	99383121	99383221	835284	0	+	0.33	(0.32,0.35]	chr2	93731	2	SS5_PROX	SS5_PROX:INTRON	EIF5B	ENSG00000158417.11	ENST00000617677.1:ENST00000289371.11	protein_coding	protein_coding	protein_coding	protein_coding	0	58	2	5.18415	5.33249	5.48083	0.00333629	3.35843e-4	0.0512081	0.0162819
chrX	41172656	41172756	7644957	0	+	0.28	[0,0.28]	chrX	782342	3	INTRON	INTRON	USP9X	ENSG00000124486.14	ENST00000324545.9:ENST00000378308.7	protein_coding	protein_coding	protein_coding	protein_coding	0	63	2	4.94561	5.332355	5.7191	0.0150263	3.82357e-4	0.0994339	0.0176949
chr3	141916774	141916874	1526486	0	+	0.41	(0.408,0.44]	chr3	159045	2	SS5_PROX	SS5_PROX:INTRON	ATP1B3	ENSG00000069849.11	ENST00000465172.5:ENST00000286371.8:ENST00000466678.5:ENST00000462082.1:ENST00000482635.1:ENST00000487199.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	114	2	4.49179	5.33197	6.17215	2.28416e-5	3.94825e-6	0.00389868	0.00131614
chr12	25207519	25207618	5297938	0	-	0.292929	(0.28,0.32]	chr12	503893	24	UTR3	UTR3:EXON_MRNA	KRAS	ENSG00000133703.14	ENST00000256078.10:ENST00000311936.8:ENST00000690406.1:ENST00000686877.1:ENST00000685328.1:ENST00000693229.1:ENST00000687356.1:ENST00000692768.1:ENST00000688940.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	174	2	3.88372	5.33194	6.78016	1.14218e-5	7.76778e-6	0.00249392	0.00209982
chr1	47336814	47336914	97604	0	+	0.28	[0,0.28]	chr1	13138	23	INTRON	INTRON	CMPK1	ENSG00000162368.14	ENST00000371873.10:ENST00000371871.8:ENST00000471289.2:ENST00000450808.2:ENST00000371870.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	63	2	5.03568	5.331805	5.62793	0.00446141	0.0022037	0.0610799	0.0417893
chr14	102715316	102715416	5823769	0	+	0.5	(0.476,0.515]	chr14	552528	3	INTRON	INTRON	RCOR1	ENSG00000089902.10	ENST00000262241.7	protein_coding	protein_coding	protein_coding	protein_coding	0	56	2	5.03466	5.331795	5.62893	0.00252065	8.45697e-5	0.0446195	0.00776967
chr3	185587113	185587213	1585279	0	+	0.47	(0.44,0.476]	chr3	164117	2	INTRON	INTRON	SENP2	ENSG00000163904.13	ENST00000430355.5:ENST00000465201.5:ENST00000453532.5:ENST00000296257.10:ENST00000413407.5:ENST00000439684.5:ENST00000458551.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	58	2	4.92968	5.331755	5.73383	0.00171443	1.70474e-4	0.0381936	0.0119761
chr6	36601448	36601534	2854493	0	+	0.476744	(0.476,0.515]	chr6	269795	4	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SRSF3	ENSG00000112081.17	ENST00000373715.11:ENST00000477442.6:ENST00000620941.1:ENST00000620389.1:ENST00000614136.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	394	2	4.59269	5.3315850000000005	6.07048	2.55307e-9	1.38784e-10	1.42467e-5	1.29974e-6
chr4	2625732	2625820	1913412	0	+	0.579545	(0.57,1]	chr4	191990	2	SS5_PROX	SS5_PROX:INTRON	FAM193A	ENSG00000125386.16	ENST00000637812.2:ENST00000324666.9:ENST00000382839.7:ENST00000512465.5:ENST00000545951.5:ENST00000502458.5:ENST00000513898.5:ENST00000505311.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	43	2	5.20396	5.331300000000001	5.45864	5.65393e-5	1.90577e-5	0.00613846	0.00354138
chr15	64078616	64078715	6202651	0	-	0.363636	(0.35,0.378]	chr15	591577	27	INTRON	INTRON	CIAO2A	ENSG00000166797.11	ENST00000300030.8:ENST00000380290.7:ENST00000559705.1:ENST00000557835.5:ENST00000559950.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	57	2	5.20743	5.32831	5.44919	9.66659e-4	7.78116e-4	0.0282401	0.0256531
chr4	82899026	82899119	2180193	0	-	0.333333	(0.32,0.35]	chr4	214424	6	INTRON	INTRON	SEC31A:THAP9-AS1	ENSG00000138674.17:ENSG00000251022.6	ENST00000355196.6:ENST00000503210.5:ENST00000507676.5:ENST00000506495.5:ENST00000507051.1:ENST00000504520.6:ENST00000504792.6:ENST00000512932.5:ENST00000511271.5:ENST00000508772.5:ENST00000513581.5:ENST00000504718.5:ENST00000505028.5:ENST00000507660.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	2	167	2	3.65627	5.32826	7.00025	3.36806e-5	1.02452e-6	0.00464062	6.27692e-4
chr1	10506373	10506472	23291	0	+	0.484848	(0.476,0.515]	chr1	2503	107	INTRON	INTRON	PEX14	ENSG00000142655.13	ENST00000472851.1:ENST00000356607.9:ENST00000491661.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	55	2	5.31058	5.328234999999999	5.34589	9.15544e-4	3.224e-4	0.0278396	0.0159645
chr10	60779451	60779545	4435776	0	+	0.287234	(0.28,0.32]	chr10	409163	4	INTRON	INTRON	CDK1	ENSG00000170312.17	ENST00000519078.6:ENST00000475504.6:ENST00000316629.8:ENST00000519760.1:ENST00000395284.8:ENST00000448257.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	178	2	4.17402	5.32818	6.48234	3.28303e-5	1.91567e-6	0.00483531	8.42932e-4
chr1	35388609	35388709	69506	0	+	0.33	(0.32,0.35]	chr1	8790	3	SS3_PROX	SS3_PROX:INTRON	ZMYM4	ENSG00000146463.12	ENST00000314607.11:ENST00000457946.1	protein_coding	protein_coding	protein_coding	protein_coding	0	58	2	5.23327	5.3281600000000005	5.42305	0.00149027	9.33826e-4	0.035	0.0278746
chr10	17230901	17230997	4398588	0	+	0.53125	(0.515,0.57]	chr10	406072	3	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	VIM	ENSG00000026025.16	ENST00000544301.7:ENST00000224237.9:ENST00000487938.5:ENST00000485947.1:ENST00000469543.5:ENST00000421459.2:ENST00000637053.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	57	2	4.76984	5.327375	5.88491	0.00198034	2.75856e-5	0.0411469	0.00430942
chr22	26583072	26583171	7564998	0	-	0.40404	(0.378,0.408]	chr22	774054	175	INTRON	INTRON	TPST2	ENSG00000128294.16	ENST00000338754.9:ENST00000403880.5:ENST00000442495.5:ENST00000440953.5:ENST00000450022.1	protein_coding	protein_coding	protein_coding	protein_coding	0	56	2	5.12128	5.327135	5.53299	0.00251746	1.47095e-4	0.0446195	0.0105341
chr11	67429791	67429890	4815098	0	+	0.434343	(0.408,0.44]	chr11	448443	3	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	RPS6KB2	ENSG00000175634.15	ENST00000530623.5:ENST00000556575.5:ENST00000312629.10:ENST00000524814.5:ENST00000524934.5:ENST00000420069.3:ENST00000528964.5:ENST00000525088.5:ENST00000525996.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	56	2	5.02028	5.327109999999999	5.63394	0.00303216	7.78928e-5	0.0493883	0.00735438
chrX	23863413	23863513	7774517	0	-	0.4	(0.378,0.408]	chrX	794746	43	INTRON	INTRON	APOO	ENSG00000184831.14	ENST00000379226.9:ENST00000633432.1:ENST00000634086.1:ENST00000439528.5:ENST00000490078.2:ENST00000634188.1:ENST00000633372.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	56	2	5.23011	5.3268450000000005	5.42358	8.39231e-4	5.72873e-4	0.0266487	0.0217398
chr11	87202466	87202566	4844461	0	+	0.43	(0.408,0.44]	chr11	451862	447	INTRON	INTRON	TMEM135	ENSG00000166575.17	ENST00000340353.11:ENST00000305494.6:ENST00000532959.5:ENST00000525018.5	protein_coding	protein_coding	protein_coding	protein_coding	0	56	2	5.12568	5.32663	5.52758	7.90919e-4	4.54953e-4	0.0258324	0.0196892
chr1	43726565	43726665	86275	0	+	0.46	(0.44,0.476]	chr1	11645	167	INTRON	INTRON	ST3GAL3	ENSG00000126091.21	ENST00000646096.1:ENST00000532911.6:ENST00000643597.1:ENST00000643886.1:ENST00000372372.7:ENST00000545417.5:ENST00000330208.6:ENST00000335430.10:ENST00000361400.9:ENST00000347631.8:ENST00000642331.1:ENST00000647237.1:ENST00000643252.1:ENST00000372374.7:ENST00000361392.9:ENST00000646109.1:ENST00000533997.6:ENST00000353126.8:ENST00000645640.1:ENST00000642934.1:ENST00000643283.1:ENST00000351035.8:ENST00000642949.1:ENST00000489897.6:ENST00000646971.1:ENST00000645142.1:ENST00000645705.1:ENST00000530154.5:ENST00000646027.1:ENST00000646069.1:ENST00000642504.1:ENST00000647148.1:ENST00000262915.8:ENST00000479383.6:ENST00000647482.1:ENST00000646776.1:ENST00000645394.1:ENST00000647128.1:ENST00000484868.2:ENST00000461066.6:ENST00000361746.9:ENST00000645034.1:ENST00000645165.1:ENST00000647134.1:ENST00000644195.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	55	2	5.3029	5.3266100000000005	5.35032	0.00102616	3.02713e-4	0.029231300000000002	0.0155054
chr11	34101529	34101627	4768173	0	+	0.255102	[0,0.28]	chr11	441041	23	UTR3	UTR3:EXON_MRNA	CAPRIN1	ENSG00000135387.21	ENST00000341394.9	protein_coding	protein_coding	protein_coding	protein_coding	0	61	2	5.30424	5.3265150000000006	5.34879	0.00584781	0.00157139	0.0667594	0.0365659
chr3	49767996	49768096	1694698	0	-	0.28	[0,0.28]	chr3	173818	192	INTRON	INTRON	IP6K1	ENSG00000176095.12	ENST00000321599.9:ENST00000395238.5:ENST00000613416.4:ENST00000468463.5:ENST00000460540.1:ENST00000498149.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	61	2	5.21054	5.3251100000000005	5.43968	0.00758653	0.00113119	0.0749063	0.0308465
chr1	65349506	65349606	136491	0	+	0.24	[0,0.28]	chr1	15358	34	INTRON	INTRON	DNAJC6	ENSG00000116675.16	ENST00000463018.5:ENST00000494710.6:ENST00000263441.11:ENST00000395325.7:ENST00000483402.1:ENST00000371069.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	61	2	5.3011	5.325	5.3489	0.00514751	0.00185843	0.062965	0.039946
chr3	115125347	115125447	1780530	0	-	0.27	[0,0.28]	chr3	179652	252	INTRON	INTRON	ZBTB20	ENSG00000181722.17	ENST00000675478.1:ENST00000357258.8:ENST00000488663.1:ENST00000470186.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	61	2	5.3011	5.325	5.3489	0.00514751	0.00185843	0.062965	0.039946
chr10	29455573	29455673	4415247	0	+	0.45	(0.44,0.476]	chr10	407249	333	INTRON	INTRON	SVIL-AS1	ENSG00000224597.11	ENST00000430295.5:ENST00000684815.1:ENST00000413405.6:ENST00000646086.2:ENST00000423223.6:ENST00000414457.6:ENST00000686070.1:ENST00000687838.1:ENST00000445521.6:ENST00000686207.1:ENST00000446807.5:ENST00000438202.5:ENST00000455774.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	55	2	5.1988	5.324885	5.45097	0.00151532	1.90652e-4	0.0352794	0.0120089
chr6	34368167	34368267	3084529	0	-	0.41	(0.408,0.44]	chr6	288633	258	INTRON	INTRON	NUDT3:RPS10-NUDT3	ENSG00000272325.2:ENSG00000270800.3	ENST00000607016.2:ENST00000639725.1:ENST00000639877.1:ENST00000605528.2	protein_coding	protein_coding	protein_coding	protein_coding	0	55	2	5.24501	5.323544999999999	5.40208	0.00137378	2.37882e-4	0.0336718	0.0136195
chr15	65768992	65769091	6209563	0	-	0.30303	(0.28,0.32]	chr15	592617	17	INTRON	INTRON	DENND4A	ENSG00000174485.16	ENST00000443035.8:ENST00000431932.6:ENST00000564674.5:ENST00000568515.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	60	2	4.98872	5.3228349999999995	5.65695	0.00838468	2.41184e-4	0.0774402	0.0136674
chr7	17799749	17799845	3495127	0	-	0.34375	(0.32,0.35]	chr7	326373	2	INTRON	INTRON	SNX13	ENSG00000071189.21	ENST00000428135.7:ENST00000611725.4:ENST00000409076.6:ENST00000496855.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	58	2	5.07629	5.32268	5.56907	0.00468114	2.27532e-4	0.0600108	0.0133228
chr7	32873129	32873227	3515434	0	-	0.285714	(0.28,0.32]	chr7	327768	19	INTRON	INTRON	KBTBD2	ENSG00000170852.12	ENST00000304056.9:ENST00000485611.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	60	2	5.08622	5.322335	5.55845	0.00227525	0.00141854	0.0437013	0.0340865
chr7	152655230	152655329	3681410	0	-	0.313131	(0.28,0.32]	chr7	341677	55	INTRON	INTRON	XRCC2	ENSG00000196584.3	ENST00000359321.2:ENST00000495707.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	59	2	5.15358	5.322089999999999	5.4906	0.0052282	4.89126e-4	0.0633615	0.0199693
chr6	17682827	17682927	3065972	0	-	0.49	(0.476,0.515]	chr6	284866	67	INTRON	INTRON	NUP153	ENSG00000124789.12	ENST00000613258.4:ENST00000537253.5:ENST00000262077.3	protein_coding	protein_coding	protein_coding	protein_coding	0	56	2	4.97253	5.321835	5.67114	0.00311573	6.83906e-5	0.0498063	0.00684369
chr6	97229233	97229318	3164220	0	-	0.447059	(0.44,0.476]	chr6	295092	5	CDS	CDS:EXON_MRNA	MMS22L	ENSG00000146263.12	ENST00000683635.1:ENST00000275053.8:ENST00000369251.6	protein_coding	protein_coding	protein_coding	protein_coding	0	55	2	5.14378	5.32128	5.49878	0.00184943	1.52058e-4	0.0388609	0.0106137
chr4	1724467	1724565	1910162	0	+	0.622449	(0.57,1]	chr4	191575	2	INTRON	INTRON	TACC3	ENSG00000013810.21	ENST00000458173.4:ENST00000651472.1:ENST00000612220.5:ENST00000484651.5:ENST00000313288.9:ENST00000467746.6:ENST00000493975.5:ENST00000652770.1:ENST00000651251.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	44	2	4.96336	5.319845	5.67633	2.05554e-4	4.81335e-6	0.0124557	0.00161664
chr1	92665140	92665239	506956	0	-	0.444444	(0.44,0.476]	chr1	59821	13	INTRON	INTRON	EVI5	ENSG00000067208.16	ENST00000370331.5:ENST00000540033.2:ENST00000684568.2:ENST00000491940.5:ENST00000468580.5:ENST00000492613.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	56	2	5.06288	5.319715	5.57655	0.00102416	3.3967e-4	0.0294041	0.0170719
chr2	38748330	38748404	1099848	0	-	0.486486	(0.476,0.515]	chr2	117996	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SRSF7	ENSG00000115875.19	ENST00000446327.6:ENST00000313117.11:ENST00000425778.5:ENST00000425941.6:ENST00000452806.5:ENST00000409276.5:ENST00000432873.5:ENST00000431066.5:ENST00000443213.5:ENST00000487773.1:ENST00000415527.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	548	2	4.82086	5.31971	5.81856	1.82681e-10	9.25291e-11	2.13589e-6	9.97388e-7
chr12	76063979	76064078	5370011	0	-	0.525253	(0.515,0.57]	chr12	512308	25	INTRON	INTRON	NAP1L1	ENSG00000187109.15	ENST00000618691.5:ENST00000552056.5:ENST00000393263.7:ENST00000431879.7:ENST00000552147.5:ENST00000547773.5:ENST00000544816.5:ENST00000542344.5:ENST00000535020.6:ENST00000549596.5:ENST00000552342.5:ENST00000547529.6:ENST00000548044.5:ENST00000550934.5:ENST00000551992.5:ENST00000548273.5:ENST00000551600.5:ENST00000547704.5:ENST00000551524.5:ENST00000549988.5:ENST00000547479.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	52	2	5.22141	5.31948	5.41755	6.44141e-4	1.1703e-4	0.0231685	0.00929802
chr9	128979627	128979727	4208184	0	+	0.54	(0.515,0.57]	chr9	385313	3	SS5_PROX	SS5_PROX:INTRON	NUP188	ENSG00000095319.14	ENST00000372577.2	protein_coding	protein_coding	protein_coding	protein_coding	0	52	2	5.30921	5.31939	5.32957	4.06834e-4	1.98811e-4	0.0185763	0.0122787
chr1	37584433	37584532	424468	0	-	0.282828	(0.28,0.32]	chr1	51359	1	INTRON	INTRON	GNL2	ENSG00000134697.13	ENST00000373062.8	protein_coding	protein_coding	protein_coding	protein_coding	0	61	2	4.86731	5.31877	5.77023	0.0116253	1.45293e-4	0.0889104	0.0104769
chr3	9818371	9818462	1361197	0	+	0.56044	(0.515,0.57]	chr3	143166	1	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	ARPC4-TTLL3:TTLL3	ENSG00000250151.9:ENSG00000214021.17	ENST00000397256.5:ENST00000417065.5:ENST00000427220.5:ENST00000426895.10:ENST00000431204.5:ENST00000685419.1:ENST00000422738.5:ENST00000430390.5:ENST00000483051.5:ENST00000310252.11:ENST00000496526.5:ENST00000496246.5:ENST00000452823.5:ENST00000474948.5:ENST00000443148.5:ENST00000383827.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	145	2	4.01623	5.318375	6.62052	2.68927e-6	6.43188e-8	0.00115663	1.09668e-4
chrX	154742071	154742171	7915230	0	-	0.29	(0.28,0.32]	chrX	806107	254	INTRON	INTRON	GAB3	ENSG00000160219.12	ENST00000496390.5:ENST00000424127.3:ENST00000369575.7:ENST00000369568.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	129	2	4.13339	5.318125	6.50286	6.24069e-5	2.9827e-5	0.00657207	0.00453231
chr3	48256011	48256110	1420626	0	+	0.424242	(0.408,0.44]	chr3	149305	80	INTRON	INTRON	ZNF589	ENSG00000164048.14	ENST00000427617.6:ENST00000412564.5:ENST00000354698.8:ENST00000440261.6:ENST00000448461.5:ENST00000457782.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	55	2	5.24267	5.317935	5.3932	7.81492e-4	4.83767e-4	0.0257168	0.0199261
chr2	15489222	15489322	1072439	0	-	0.2	[0,0.28]	chr2	114428	2	SS3_PROX	SS3_PROX:INTRON	NBAS	ENSG00000151779.13	ENST00000281513.10:ENST00000427792.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	67	2	4.62084	5.3171800000000005	6.01352	0.0313633	1.07908e-4	0.13151	0.00878438
chr4	94261722	94261821	1998061	0	+	0.535354	(0.515,0.57]	chr4	199451	77	INTRON	INTRON	SMARCAD1	ENSG00000163104.18	ENST00000359052.8:ENST00000457823.6:ENST00000354268.9:ENST00000510105.5:ENST00000394961.6:ENST00000509418.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	52	2	5.16413	5.316470000000001	5.46881	8.14815e-4	9.03271e-5	0.0263656	0.00795396
chr7	22983154	22983253	3501723	0	-	0.525253	(0.515,0.57]	chr7	326782	30	EXON_MRNA	EXON_MRNA:INTRON	FAM126A	ENSG00000122591.13	ENST00000465661.2:ENST00000432176.7:ENST00000440481.6:ENST00000679826.1:ENST00000681402.1:ENST00000681237.1:ENST00000679789.1:ENST00000409923.5:ENST00000681766.1:ENST00000681079.1:ENST00000477349.5:ENST00000409763.1:ENST00000467005.6:ENST00000681468.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	52	2	5.16413	5.316470000000001	5.46881	8.14815e-4	9.03271e-5	0.0263656	0.00795396
chr11	61443040	61443140	4796657	0	+	0.35	(0.32,0.35]	chr11	444313	43	INTRON	INTRON	ENSG00000256591:SDHAF2	ENSG00000256591.5:ENSG00000167985.7	ENST00000544025.5:ENST00000542794.5:ENST00000541135.5:ENST00000542074.1:ENST00000536670.5:ENST00000301761.7:ENST00000538594.5:ENST00000537782.5:ENST00000359614.9:ENST00000544801.5:ENST00000544880.1:ENST00000543265.1:ENST00000543044.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	58	2	5.01917	5.315205	5.61124	0.0055659	1.88018e-4	0.0648867	0.011951
chr19	11123744	11123844	7017181	0	+	0.4	(0.378,0.408]	chr19	697501	4	SS5_PROX	SS5_PROX:INTRON	LDLR	ENSG00000130164.14	ENST00000557933.5:ENST00000558518.6:ENST00000545707.5:ENST00000535915.5:ENST00000455727.6:ENST00000558013.5:ENST00000252444.9	protein_coding	protein_coding	protein_coding	protein_coding	0	59	2	4.84627	5.3149999999999995	5.78373	0.00254319	1.89312e-4	0.0465056	0.012565
chr9	77916760	77916860	4270797	0	-	0.4	(0.378,0.408]	chr9	392874	1006	INTRON	INTRON	GNAQ	ENSG00000156052.11	ENST00000286548.9:ENST00000411677.1	protein_coding	protein_coding	protein_coding	protein_coding	0	58	2	4.91776	5.314435	5.71111	0.00196368	2.59738e-4	0.0411469	0.0148796
chr13	28148083	28148182	5460924	0	+	0.484848	(0.476,0.515]	chr13	523235	86	INTRON	INTRON	PAN3	ENSG00000152520.14	ENST00000503791.5:ENST00000380958.8:ENST00000399613.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	113	2	4.52384	5.313055	6.10227	2.54722e-5	3.3232e-6	0.00416607	0.00118585
chr6	17625520	17625613	3065380	0	-	0.322581	(0.32,0.35]	chr6	284771	3	SS5_PROX	SS5_PROX:INTRON	NUP153	ENSG00000124789.12	ENST00000613258.4:ENST00000537253.5:ENST00000262077.3	protein_coding	protein_coding	protein_coding	protein_coding	4	247	2	3.28876	5.312285	7.33581	3.78266e-5	6.15065e-9	0.00524425	2.62225e-5
chr19	34282059	34282158	7051662	0	+	0.262626	[0,0.28]	chr19	703254	161	INTRON	INTRON	GARRE1	ENSG00000166398.14	ENST00000588470.5:ENST00000299505.8:ENST00000589583.5:ENST00000588338.6:ENST00000592124.1:ENST00000585833.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	61	2	5.05748	5.311795	5.56611	0.0113653	7.02173e-4	0.0886611	0.0241881
chr7	152068699	152068799	3449941	0	+	0.26	[0,0.28]	chr7	322435	406	INTRON	INTRON	GALNT11	ENSG00000178234.13	ENST00000430044.7:ENST00000482812.1:ENST00000431668.1:ENST00000446096.5:ENST00000447778.5:ENST00000423337.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	61	2	5.05748	5.311795	5.56611	0.0113653	7.02173e-4	0.0886611	0.0241881
chr1	109354166	109354266	520573	0	-	0.36	(0.35,0.378]	chr1	61168	4	SS5_PROX	SS5_PROX:INTRON	SORT1	ENSG00000134243.12	ENST00000538502.5:ENST00000256637.8:ENST00000493736.5	protein_coding	protein_coding	protein_coding	protein_coding	1	122	2	4.7234	5.311495	5.89959	1.52893e-4	1.14635e-6	0.0112857	6.1522e-4
chr21	15731237	15731337	7370107	0	+	0.35	(0.32,0.35]	chr21	752186	4	INTRON	INTRON	USP25	ENSG00000155313.16	ENST00000400183.7:ENST00000285681.6:ENST00000285679.10:ENST00000351097.9	protein_coding	protein_coding	protein_coding	protein_coding	0	57	2	5.2845	5.310975	5.33745	0.00240071	6.1485e-4	0.0440612	0.0223951
chr1	247188334	247188430	683887	0	-	0.291667	(0.28,0.32]	chr1	80179	12	EXON_LNCRNA	EXON_LNCRNA	ENSG00000259865	ENSG00000259865.1	ENST00000566446.1	lncRNA	lncRNA	lncRNA	lncRNA	0	59	2	5.14341	5.3106	5.47779	0.00187048	0.00185891	0.039946	0.0390476
chr7	152143216	152143315	3678281	0	-	0.373737	(0.35,0.378]	chr7	341376	21	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000360104.8:ENST00000262189.11:ENST00000418061.2:ENST00000680877.1:ENST00000424877.6:ENST00000679560.1:ENST00000682040.1:ENST00000683640.1:ENST00000682116.1:ENST00000683120.1:ENST00000681923.1:ENST00000679393.1:ENST00000683200.1:ENST00000684768.1:ENST00000680029.1:ENST00000683337.1:ENST00000682629.1:ENST00000683178.1:ENST00000682137.1:ENST00000683502.1:ENST00000684261.1:ENST00000682283.1:ENST00000473186.5:ENST00000684649.1:ENST00000679882.1:ENST00000683621.1:ENST00000679567.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	56	2	5.15723	5.310585	5.46394	0.00272706	2.60035e-4	0.0467523	0.014326
chr2	121593578	121593678	1221830	0	-	0.36	(0.35,0.378]	chr2	130051	629	INTRON	INTRON	CLASP1	ENSG00000074054.20	ENST00000263710.8:ENST00000397587.7:ENST00000541377.5:ENST00000409078.8:ENST00000455322.6	protein_coding	protein_coding	protein_coding	protein_coding	0	56	2	5.26251	5.310395	5.35828	0.00135282	6.20882e-4	0.0336321	0.0223951
chr1	174407724	174407824	259607	0	+	0.38	(0.378,0.408]	chr1	30818	132	INTRON	INTRON	RABGAP1L	ENSG00000152061.24	ENST00000357444.10:ENST00000251507.8:ENST00000681986.1:ENST00000367690.5:ENST00000526253.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	57	2	4.98587	5.31025	5.63463	0.00152268	3.59226e-4	0.0360297	0.0175484
chr4	159105530	159105630	2073524	0	+	0.36	(0.35,0.378]	chr4	205172	9	INTRON	INTRON	RAPGEF2	ENSG00000109756.10	ENST00000644474.1:ENST00000691494.1:ENST00000505478.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	58	2	4.8587	5.3095	5.7603	0.00695662	6.3427e-5	0.0718189	0.00658818
chr19	55019023	55019123	7100348	0	+	0.34	(0.32,0.35]	chr19	712212	116	INTRON	INTRON	GP6-AS1	ENSG00000267265.6	ENST00000593060.5:ENST00000586845.1	lncRNA	lncRNA	lncRNA	lncRNA	0	57	2	5.18415	5.309374999999999	5.4346	0.00333629	4.09682e-4	0.0512081	0.0181306
chr2	107724246	107724346	1205792	0	-	0.51	(0.476,0.515]	chr2	128532	66	INTRON	INTRON	LINC01885:ENSG00000286769	ENSG00000237880.2:ENSG00000286769.1	ENST00000654481.1:ENST00000669817.1	lncRNA	lncRNA	lncRNA	lncRNA	0	56	2	4.99342	5.30932	5.62522	0.00139274	2.4907e-4	0.0341261	0.0145812
chr7	75429443	75429542	3558357	0	-	0.494949	(0.476,0.515]	chr7	331515	26	INTRON	INTRON	POM121C	ENSG00000272391.6	ENST00000615331.5:ENST00000607367.5:ENST00000473168.1:ENST00000439629.2:ENST00000479864.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	56	2	4.99342	5.30932	5.62522	0.00139274	2.4907e-4	0.0341261	0.0145812
chr17	5461609	5461678	6714726	0	-	0.405797	(0.378,0.408]	chr17	658316	1	INTRON	INTRON	DHX33	ENSG00000005100.13	ENST00000225296.8:ENST00000433302.7:ENST00000572490.1:ENST00000574023.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	55	2	5.28033	5.30931	5.33829	0.00143651	3.59275e-4	0.0340925	0.0169207
chr1	11742832	11742932	25313	0	+	0.59	(0.57,1]	chr1	2739	62	INTRON	INTRON	AGTRAP	ENSG00000177674.16	ENST00000376637.7:ENST00000476512.5:ENST00000400895.6:ENST00000494437.1:ENST00000314340.10:ENST00000491346.5:ENST00000376629.8:ENST00000376627.6:ENST00000452018.6:ENST00000510878.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	42	2	5.27067	5.307645	5.34462	5.68536e-5	2.48598e-5	0.00655354	0.00391773
chr2	20300777	20300877	1076274	0	-	0.39	(0.378,0.408]	chr2	114994	27	INTRON	INTRON	PUM2	ENSG00000055917.16	ENST00000338086.9:ENST00000361078.7:ENST00000440577.5	protein_coding	protein_coding	protein_coding	protein_coding	0	55	2	5.17627	5.307595	5.43892	0.00208234	2.28412e-4	0.0411801	0.0133228
chr15	89296373	89296470	6096283	0	+	0.340206	(0.32,0.35]	chr15	580203	9	INTRON	INTRON	FANCI	ENSG00000140525.20	ENST00000674831.1:ENST00000300027.12:ENST00000310775.12:ENST00000696717.1:ENST00000676003.1:ENST00000696718.1:ENST00000447611.6:ENST00000696719.1:ENST00000565522.5:ENST00000561894.1:ENST00000566895.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	163	2	3.99962	5.306455	6.61329	8.30729e-6	4.1872e-6	0.00219576	0.00136409
chr3	186802291	186802391	1889657	0	-	0.37	(0.35,0.378]	chr3	189042	7	INTRON	INTRON	RFC4	ENSG00000163918.12	ENST00000433496.5:ENST00000392481.6:ENST00000296273.7:ENST00000494047.5:ENST00000418288.5:ENST00000449502.5:ENST00000427785.5:ENST00000448497.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	56	2	5.10226	5.3062249999999995	5.51019	0.00327038	2.10803e-4	0.0508595	0.0126882
chr3	196809300	196809399	1596195	0	+	0.353535	(0.35,0.378]	chr3	165338	10	INTRON	INTRON	PAK2	ENSG00000180370.10	ENST00000327134.7	protein_coding	protein_coding	protein_coding	protein_coding	0	56	2	5.10226	5.3062249999999995	5.51019	0.00327038	2.10803e-4	0.0508595	0.0126882
chr1	244675305	244675405	347933	0	+	0.33	(0.32,0.35]	chr1	40357	189	INTRON	INTRON	DESI2	ENSG00000121644.19	ENST00000263831.11:ENST00000302550.16:ENST00000418162.1	protein_coding	protein_coding	protein_coding	protein_coding	0	58	2	4.95971	5.3059650000000005	5.65222	0.00663522	1.55757e-4	0.0703181	0.0106835
chr20	58982162	58982260	7291241	0	+	0.530612	(0.515,0.57]	chr20	741875	4	INTRON	INTRON	NELFCD	ENSG00000101158.15	ENST00000602795.6:ENST00000492016.5:ENST00000471621.5:ENST00000652272.2:ENST00000460601.5:ENST00000482747.1:ENST00000464363.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	53	2	4.99635	5.304444999999999	5.61254	8.06602e-4	1.10757e-4	0.0258804	0.00945003
chr9	124744240	124744340	4348945	0	-	0.21	[0,0.28]	chr9	399261	105	INTRON	INTRON	NR6A1	ENSG00000148200.17	ENST00000487099.7:ENST00000373584.7:ENST00000416460.6:ENST00000344523.8	protein_coding	protein_coding	protein_coding	protein_coding	0	61	2	5.00263	5.30427	5.60591	0.013055	6.01442e-4	0.093385	0.0223465
chr2	61275264	61275364	1128545	0	-	0.4	(0.378,0.408]	chr2	121280	87	INTRON	INTRON	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000472706.5:ENST00000453734.1:ENST00000484179.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	55	2	5.23011	5.30375	5.37739	0.0010014	5.72873e-4	0.0288906	0.0217398
chr1	167957847	167957947	248701	0	+	0.32	(0.28,0.32]	chr1	29542	56	INTRON	INTRON	DCAF6	ENSG00000143164.16	ENST00000450548.5:ENST00000470919.5:ENST00000432587.6:ENST00000367843.7:ENST00000470721.5:ENST00000367840.4:ENST00000312263.10:ENST00000455334.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	59	2	4.98872	5.302925	5.61713	0.00838468	2.86819e-4	0.0774402	0.0150568
chr1	207345455	207345554	303514	0	+	0.252525	[0,0.28]	chr1	34926	45	INTRON	INTRON	CD55	ENSG00000196352.18	ENST00000695822.1:ENST00000695823.1:ENST00000695826.1:ENST00000695825.1:ENST00000695827.1:ENST00000645323.1:ENST00000391921.9:ENST00000367064.9:ENST00000314754.12:ENST00000644836.1:ENST00000476590.1:ENST00000465534.5:ENST00000618707.2:ENST00000635614.2:ENST00000695831.1:ENST00000634386.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	60	2	5.3011	5.30267	5.30424	0.00584781	0.00185843	0.0667594	0.039946
chr2	32451417	32451516	731745	0	+	0.282828	(0.28,0.32]	chr2	84393	21	INTRON	INTRON	BIRC6	ENSG00000115760.15	ENST00000421745.7:ENST00000648282.1	protein_coding	protein_coding	protein_coding	protein_coding	0	63	2	4.66359	5.30242	5.94125	0.0193496	6.50094e-5	0.108861	0.00668837
chr1	244665113	244665213	347831	0	+	0.29	(0.28,0.32]	chr1	40357	87	INTRON	INTRON	DESI2	ENSG00000121644.19	ENST00000263831.11:ENST00000302550.16:ENST00000418162.1	protein_coding	protein_coding	protein_coding	protein_coding	0	58	2	5.2046	5.30211	5.39962	0.00448664	7.06751e-4	0.0593175	0.0241881
chr2	71337067	71337166	807063	0	+	0.292929	(0.28,0.32]	chr2	90134	21	INTRON	INTRON	ZNF638	ENSG00000075292.19	ENST00000494621.5:ENST00000410075.5:ENST00000466975.5:ENST00000466330.5:ENST00000437658.2:ENST00000464375.5:ENST00000475743.1:ENST00000409544.5:ENST00000455226.5:ENST00000454278.5:ENST00000264447.9:ENST00000454122.1:ENST00000417778.5:ENST00000487707.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	58	2	5.30153	5.30203	5.30253	0.00332518	0.0010319	0.0512081	0.0294094
chr10	70674155	70674255	4447339	0	+	0.51	(0.476,0.515]	chr10	410361	2	SS3_PROX	SS3_PROX:INTRON	ADAMTS14	ENSG00000138316.11	ENST00000373207.2:ENST00000373208.5	protein_coding	protein_coding	protein_coding	protein_coding	0	54	2	5.20645	5.30177	5.39709	0.00136049	2.55871e-4	0.0336321	0.0142249
chr7	151369290	151369387	3449362	0	+	0.484536	(0.476,0.515]	chr7	322389	2	SS5_PROX	SS5_PROX:INTRON	NUB1	ENSG00000013374.17	ENST00000413040.7:ENST00000568733.6:ENST00000470229.6:ENST00000460712.1:ENST00000480714.1	protein_coding	protein_coding	protein_coding	protein_coding	0	54	2	5.20645	5.30177	5.39709	0.00136049	2.55871e-4	0.0336321	0.0142249
chr3	17700708	17700806	1630014	0	-	0.459184	(0.44,0.476]	chr3	168271	8	INTRON	INTRON	TBC1D5	ENSG00000131374.15	ENST00000253692.11:ENST00000696125.1:ENST00000414318.2:ENST00000429383.8:ENST00000415814.6:ENST00000452492.6:ENST00000412981.5:ENST00000428355.5:ENST00000425944.5:ENST00000430169.5:ENST00000445294.5:ENST00000414349.5:ENST00000443499.6:ENST00000444756.5:ENST00000497531.5:ENST00000443386.5:ENST00000446863.5:ENST00000444471.5:ENST00000433533.5:ENST00000481396.5:ENST00000423331.6:ENST00000485432.1:ENST00000471679.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	54	2	5.25179	5.301055	5.35032	0.00124521	3.02713e-4	0.0322969	0.0155054
chr1	16317431	16317531	382269	0	-	0.48	(0.476,0.515]	chr1	44888	16	INTRON	INTRON	FBXO42	ENSG00000037637.11	ENST00000375592.8	protein_coding	protein_coding	protein_coding	protein_coding	1	113	2	4.58925	5.30087	6.01249	4.02459e-5	2.16839e-6	0.00539487	9.17941e-4
chr1	202789091	202789191	620557	0	-	0.35	(0.32,0.35]	chr1	73670	116	INTRON	INTRON	KDM5B	ENSG00000117139.18	ENST00000367265.9:ENST00000648338.1:ENST00000649542.1:ENST00000647757.1:ENST00000367264.7:ENST00000648473.1:ENST00000650569.1:ENST00000648056.1:ENST00000649770.1:ENST00000648469.1:ENST00000650417.1:ENST00000235790.9:ENST00000648738.1:ENST00000648958.1:ENST00000602511.1:ENST00000650368.1:ENST00000649200.1:ENST00000648354.1:ENST00000650493.1:ENST00000470573.5:ENST00000467487.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	57	2	5.17822	5.300635	5.42305	0.00149027	0.00115625	0.035	0.0313436
chr12	57388852	57388951	5338836	0	-	0.343434	(0.32,0.35]	chr12	510710	475	INTRON	INTRON	R3HDM2	ENSG00000179912.21	ENST00000402412.6:ENST00000347140.7:ENST00000634871.1:ENST00000448732.1	protein_coding	protein_coding	protein_coding	protein_coding	0	57	2	5.17822	5.300635	5.42305	0.00149027	0.00115625	0.035	0.0313436
chr7	111147724	111147824	3619959	0	-	0.34	(0.32,0.35]	chr7	337093	1838	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	57	2	5.17822	5.300635	5.42305	0.00149027	0.00115625	0.035	0.0313436
chr21	34842499	34842599	7446806	0	-	0.25	[0,0.28]	chr21	759836	75	INTRON	INTRON	RUNX1	ENSG00000159216.19	ENST00000300305.7:ENST00000675419.1:ENST00000437180.5:ENST00000344691.8:ENST00000482318.5:ENST00000399240.5:ENST00000358356.9:ENST00000469087.1:ENST00000399237.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	60	2	5.1613	5.30049	5.43968	0.00866441	0.00113119	0.0787025	0.0308465
chr13	50049188	50049282	5594260	0	-	0.255319	[0,0.28]	chr13	534696	1	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	DLEU2	ENSG00000231607.14	ENST00000621282.4:ENST00000688690.1:ENST00000668305.1:ENST00000425586.5:ENST00000686946.1:ENST00000458725.7:ENST00000692504.1:ENST00000443587.6:ENST00000686700.1:ENST00000691340.1:ENST00000433070.7:ENST00000659339.1:ENST00000662092.1:ENST00000666359.2:ENST00000449579.2:ENST00000421758.6:ENST00000690259.1	lncRNA	lncRNA	lncRNA	lncRNA	0	60	2	5.25178	5.30034	5.3489	0.00514751	0.0022031	0.062965	0.0435144
chr20	41082995	41083091	7274052	0	+	0.375	(0.35,0.378]	chr20	739242	14	INTRON	INTRON	TOP1	ENSG00000198900.7	ENST00000361337.3:ENST00000681113.1:ENST00000681058.1:ENST00000681392.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	56	2	5.15016	5.299675	5.44919	9.78549e-4	9.66659e-4	0.0287765	0.0282401
chr3	154307678	154307777	1843366	0	-	0.40404	(0.378,0.408]	chr3	185450	10	INTRON	INTRON	DHX36	ENSG00000174953.14	ENST00000496811.6:ENST00000308361.10:ENST00000329463.9:ENST00000481941.5	protein_coding	protein_coding	protein_coding	protein_coding	0	55	2	5.17281	5.298195	5.42358	8.39231e-4	7.27294e-4	0.0266487	0.0245647
chr10	133465756	133465851	4540636	0	+	0.431579	(0.408,0.44]	chr10	419137	3	EXON_MRNA	EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SCART1	ENSG00000214279.13	ENST00000482993.6:ENST00000463137.5:ENST00000640237.1:ENST00000488261.6:ENST00000462252.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	120	2	3.93309	5.297535	6.66198	1.78185e-4	1.63034e-7	0.0121697	1.85753e-4
chr16	70384226	70384325	6510910	0	-	0.363636	(0.35,0.378]	chr16	630663	6	INTRON	INTRON	ST3GAL2	ENSG00000157350.13	ENST00000342907.3:ENST00000393640.8:ENST00000567822.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	126	2	3.94738	5.29718	6.64698	2.06843e-4	3.65548e-7	0.0131276	3.09494e-4
chr11	32585464	32585561	4764484	0	+	0.371134	(0.35,0.378]	chr11	440546	8	INTRON	INTRON	EIF3M	ENSG00000149100.13	ENST00000531921.5:ENST00000531120.6:ENST00000525782.5:ENST00000531186.5:ENST00000524896.5:ENST00000532444.5:ENST00000323213.9:ENST00000524711.5:ENST00000530026.5:ENST00000532054.1:ENST00000533439.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	117	2	4.11715	5.29681	6.47647	4.60289e-5	9.324e-6	0.00552588	0.00235825
chr4	79923217	79923317	2169036	0	-	0.28	[0,0.28]	chr4	213845	27	INTRON	INTRON	ANTXR2	ENSG00000163297.18	ENST00000403729.7:ENST00000449651.5:ENST00000679571.1:ENST00000681710.1:ENST00000680913.1:ENST00000681115.1:ENST00000482406.1:ENST00000491345.1:ENST00000404191.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	60	2	5.11033	5.2966999999999995	5.48307	0.00991388	9.62922e-4	0.0838372	0.0285195
chr1	55097497	55097597	464661	0	-	0.28	[0,0.28]	chr1	56031	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	USP24	ENSG00000162402.14	ENST00000294383.7	protein_coding	protein_coding	protein_coding	protein_coding	0	60	2	5.20071	5.2964649999999995	5.39222	0.00453865	0.00261806	0.0595107	0.0470772
chr14	102552463	102552560	5822496	0	+	0.474227	(0.44,0.476]	chr14	552479	16	INTRON	INTRON	LINC02323	ENSG00000259230.1	ENST00000559946.1	lncRNA	lncRNA	lncRNA	lncRNA	0	57	2	4.85817	5.296	5.73383	0.00223254	1.70474e-4	0.0435144	0.0119761
chr16	70247853	70247950	6510042	0	-	0.474227	(0.44,0.476]	chr16	630495	12	UTR3	UTR3:EXON_MRNA	EXOSC6	ENSG00000223496.3	ENST00000435634.3	protein_coding	protein_coding	protein_coding	protein_coding	0	57	2	4.85817	5.296	5.73383	0.00223254	1.70474e-4	0.0435144	0.0119761
chr1	41182732	41182831	430231	0	-	0.313131	(0.28,0.32]	chr1	52248	199	INTRON	INTRON	SCMH1	ENSG00000010803.17	ENST00000695335.1:ENST00000372596.5:ENST00000372597.5:ENST00000337495.9:ENST00000695336.1	protein_coding	protein_coding	protein_coding	protein_coding	1	127	2	4.10903	5.295685	6.48234	7.08337e-5	3.28303e-5	0.00695952	0.00483531
chr2	69858512	69858610	805045	0	+	0.306122	(0.28,0.32]	chr2	89835	32	INTRON	INTRON	GMCL1	ENSG00000087338.5	ENST00000282570.4	protein_coding	protein_coding	protein_coding	protein_coding	0	58	2	5.19842	5.295385	5.39235	0.0024844	0.00152333	0.0446195	0.0360297
chr3	9426965	9427062	1359184	0	+	0.515464	(0.515,0.57]	chr3	142683	4	INTRON	INTRON	SETD5	ENSG00000168137.20	ENST00000402198.7:ENST00000431285.5:ENST00000683012.1:ENST00000463180.5:ENST00000478475.5:ENST00000415650.5:ENST00000682536.1:ENST00000663774.1:ENST00000665872.1:ENST00000666307.1:ENST00000693430.1:ENST00000691925.1:ENST00000684606.1:ENST00000691175.1:ENST00000688835.1:ENST00000683262.1:ENST00000443339.5:ENST00000406341.5:ENST00000670063.1:ENST00000468208.2:ENST00000691299.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	52	2	4.97722	5.294855	5.61249	0.00168681	4.24748e-5	0.0370386	0.00526976
chr7	16652468	16652567	3286558	0	+	0.383838	(0.378,0.408]	chr7	305237	58	INTRON	INTRON	BZW2	ENSG00000136261.16	ENST00000415365.5:ENST00000630952.2:ENST00000433922.6:ENST00000437745.5:ENST00000432311.5:ENST00000436868.5:ENST00000258761.8:ENST00000405202.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	62	2	4.60771	5.2948249999999994	5.98194	0.00567576	7.66211e-5	0.0678837	0.00781006
chrX	121219926	121220026	7715389	0	+	0.39	(0.378,0.408]	chrX	789390	337	INTRON	INTRON	ENSG00000286163	ENSG00000286163.1	ENST00000651788.1	lncRNA	lncRNA	lncRNA	lncRNA	2	150	2	3.98868	5.294375	6.60007	3.11297e-6	3.04165e-6	0.00125281	0.00112184
chr11	13690173	13690273	4742521	0	+	0.33	(0.32,0.35]	chr11	439155	202	INTRON	INTRON	FAR1	ENSG00000197601.13	ENST00000354817.8:ENST00000532701.1	protein_coding	protein_coding	protein_coding	protein_coding	0	58	2	4.99922	5.294225	5.58923	0.00223907	8.12357e-4	0.0435144	0.0263656
chr1	36177042	36177142	72873	0	+	0.58	(0.57,1]	chr1	9325	2	SS5_PROX	SS5_PROX:INTRON	MAP7D1	ENSG00000116871.16	ENST00000316156.8:ENST00000474796.2:ENST00000373150.8:ENST00000373151.6:ENST00000530975.4:ENST00000487131.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	43	2	4.96336	5.294135	5.62491	2.05554e-4	6.73465e-6	0.0124557	0.00194394
chr4	53242338	53242438	2144101	0	-	0.42	(0.408,0.44]	chr4	211165	964	INTRON	INTRON	SCFD2	ENSG00000184178.17	ENST00000401642.8:ENST00000388940.8	protein_coding	protein_coding	protein_coding	protein_coding	0	54	2	5.24267	5.294075	5.34548	9.40657e-4	4.83767e-4	0.0280776	0.0199261
chr7	99049062	99049162	3582181	0	-	0.42	(0.408,0.44]	chr7	333647	1	SS5_PROX	SS5_PROX:INTRON	SMURF1	ENSG00000198742.10	ENST00000361368.7:ENST00000361125.1	protein_coding	protein_coding	protein_coding	protein_coding	0	54	2	5.24267	5.294075	5.34548	9.40657e-4	4.83767e-4	0.0280776	0.0199261
chr5	139316376	139316464	2499615	0	+	0.522727	(0.515,0.57]	chr5	238932	2	SS5_PROX	SS5_PROX:INTRON	MATR3	ENSG00000280987.4:ENSG00000015479.20	ENST00000509990.5:ENST00000361059.7:ENST00000394800.6:ENST00000502929.5:ENST00000504203.5:ENST00000509644.5:ENST00000512876.5:ENST00000513678.5:ENST00000504045.5:ENST00000504311.5:ENST00000502499.5:ENST00000510056.5:ENST00000511249.5:ENST00000394805.8:ENST00000509918.5:ENST00000503811.5:ENST00000511978.5:ENST00000618441.5:ENST00000514528.5:ENST00000504643.5:ENST00000515833.2:ENST00000505625.5:ENST00000511333.5:ENST00000502422.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	58	2	4.51	5.2931550000000005	6.07631	0.00809449	2.77842e-6	0.0766625	0.00107208
chr5	28968670	28968770	2331439	0	+	0.55	(0.515,0.57]	chr5	225139	415	INTRON	INTRON	LINC02109	ENSG00000259786.7	ENST00000658190.1	lncRNA	lncRNA	lncRNA	lncRNA	0	51	2	5.22141	5.292904999999999	5.3644	6.44141e-4	1.52226e-4	0.0231685	0.0106137
chr6	110990553	110990652	2939387	0	+	0.535354	(0.515,0.57]	chr6	276852	11	INTRON	INTRON	RPF2	ENSG00000197498.13	ENST00000368864.8:ENST00000441448.7:ENST00000607388.1:ENST00000425871.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	51	2	5.22141	5.292904999999999	5.3644	6.44141e-4	1.52226e-4	0.0231685	0.0106137
chr6	136681567	136681667	3234525	0	-	0.52	(0.515,0.57]	chr6	300664	118	INTRON	INTRON	MAP3K5	ENSG00000197442.10	ENST00000359015.5	protein_coding	protein_coding	protein_coding	protein_coding	0	51	2	5.22141	5.292904999999999	5.3644	6.44141e-4	1.52226e-4	0.0231685	0.0106137
chr19	38672931	38673031	7065981	0	+	0.46	(0.44,0.476]	chr19	705486	243	INTRON	INTRON	ACTN4	ENSG00000130402.13	ENST00000252699.7:ENST00000588618.5:ENST00000440400.2:ENST00000424234.7:ENST00000589528.1:ENST00000390009.7:ENST00000495553.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	54	2	5.08659	5.2926850000000005	5.49878	0.00226401	1.52058e-4	0.0425438	0.0106137
chr12	122225219	122225314	5439709	0	-	0.557895	(0.515,0.57]	chr12	520192	6	EXON_MRNA	EXON_MRNA:SS3_PROX:SS5_PROX:INTRON	DIABLO	ENSG00000184047.20	ENST00000443649.9:ENST00000650715.1:ENST00000464942.7:ENST00000353548.11:ENST00000644227.1:ENST00000644509.1:ENST00000342392.3:ENST00000645569.1:ENST00000267169.11:ENST00000540535.6:ENST00000541273.6:ENST00000541656.6:ENST00000446652.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	135	2	3.76626	5.292125	6.81799	8.82219e-6	8.5099e-8	0.00213621	1.25981e-4
chr2	148055362	148055460	887095	0	+	0.265306	[0,0.28]	chr2	98626	11	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	MBD5	ENSG00000204406.14	ENST00000407073.5:ENST00000488372.5:ENST00000496158.5:ENST00000642680.2:ENST00000638130.1:ENST00000637308.1:ENST00000473478.5:ENST00000635796.1:ENST00000637997.1:ENST00000470063.5:ENST00000638043.2:ENST00000638090.1:ENST00000637445.1:ENST00000637242.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	63	2	4.75964	5.29185	5.82406	0.0232081	2.47093e-4	0.118148	0.0139149
chr7	119667864	119667964	3628015	0	-	0.32	(0.28,0.32]	chr7	337315	1674	INTRON	INTRON	LINC02476	ENSG00000225546.6	ENST00000660268.1	lncRNA	lncRNA	lncRNA	lncRNA	1	140	2	4.27229	5.290815	6.30934	7.17184e-5	9.82559e-6	0.00761173	0.00227957
chr17	81613125	81613217	6849365	0	-	0.23913	[0,0.28]	chr17	678221	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NPLOC4	ENSG00000182446.14	ENST00000331134.11:ENST00000374747.9:ENST00000574897.5:ENST00000570324.1:ENST00000574344.5:ENST00000625705.1:ENST00000570300.1:ENST00000571562.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	62	2	4.82433	5.28964	5.75495	0.0200334	3.2999e-4	0.109608	0.0161352
chr7	107100775	107100875	3377729	0	+	0.27	[0,0.28]	chr7	316252	85	INTRON	INTRON	PRKAR2B	ENSG00000005249.13	ENST00000265717.5:ENST00000393613.6:ENST00000488792.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	62	2	4.82433	5.28964	5.75495	0.0200334	3.2999e-4	0.109608	0.0161352
chrX	135892250	135892349	7895487	0	-	0.313131	(0.28,0.32]	chrX	803847	33	INTRON	INTRON	CT45A10	ENSG00000269586.8	ENST00000682849.1	protein_coding	protein_coding	protein_coding	protein_coding	0	58	2	5.14341	5.289555	5.4357	0.00215368	0.00185891	0.0417866	0.039946
chr22	17757354	17757454	7548067	0	-	0.48	(0.476,0.515]	chr22	771498	68	INTRON	INTRON	BID	ENSG00000015475.19	ENST00000622694.5:ENST00000317361.11:ENST00000614949.4:ENST00000399765.5:ENST00000399767.6:ENST00000342111.9:ENST00000551952.5:ENST00000550946.5:ENST00000473439.5:ENST00000552886.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	55	2	4.99342	5.288835000000001	5.58425	0.00139274	2.97744e-4	0.0341261	0.0160246
chr5	127523757	127523845	2479856	0	+	0.272727	[0,0.28]	chr5	236780	3	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	PRRC1	ENSG00000164244.21	ENST00000296666.13:ENST00000512871.1:ENST00000442138.6:ENST00000512635.2:ENST00000507774.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	65	2	4.62084	5.286965	5.95309	0.0313633	1.4134e-4	0.13151	0.0102551
chr7	149246689	149246788	3445720	0	+	0.353535	(0.35,0.378]	chr7	321412	63	INTRON	INTRON	ZNF212	ENSG00000170260.9	ENST00000335870.7:ENST00000486371.1:ENST00000462724.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	55	2	5.15723	5.28669	5.41615	0.00272706	3.21724e-4	0.0467523	0.0159645
chr1	44632727	44632811	92095	0	+	0.452381	(0.44,0.476]	chr1	12198	2	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	RNF220	ENSG00000187147.18	ENST00000355387.6:ENST00000361799.7:ENST00000372247.6:ENST00000453863.5:ENST00000440132.2:ENST00000335497.11:ENST00000474064.5:ENST00000471494.5:ENST00000488865.2:ENST00000497469.5:ENST00000475378.5:ENST00000484745.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	54	2	5.12513	5.285665	5.4462	7.96486e-4	5.83686e-4	0.0258804	0.0223753
chr4	48347413	48347513	1957081	0	+	0.47	(0.44,0.476]	chr4	196116	49	INTRON	INTRON	SLAIN2	ENSG00000109171.15	ENST00000264313.11	protein_coding	protein_coding	protein_coding	protein_coding	0	54	2	5.12513	5.285665	5.4462	7.96486e-4	5.83686e-4	0.0258804	0.0223753
chr2	99380120	99380216	835252	0	+	0.302083	(0.28,0.32]	chr2	93722	3	INTRON	INTRON	EIF5B	ENSG00000158417.11	ENST00000617677.1:ENST00000289371.11	protein_coding	protein_coding	protein_coding	protein_coding	0	60	2	4.89962	5.285595	5.67157	0.00425206	9.48957e-4	0.0595557	0.0281755
chr3	72411713	72411813	1745572	0	-	0.39	(0.378,0.408]	chr3	177368	312	INTRON	INTRON	RYBP	ENSG00000163602.12	ENST00000477973.5	protein_coding	protein_coding	protein_coding	protein_coding	0	54	2	5.22924	5.283765	5.33829	0.00172721	3.59275e-4	0.0374701	0.0169207
chr21	10446137	10446237	7368456	0	+	0.35	(0.32,0.35]	chr21	751975	309	INTRON	INTRON	BAGE2	ENSG00000187172.15	ENST00000474011.5:ENST00000470054.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	56	2	5.13123	5.282915	5.4346	0.00394704	4.09682e-4	0.0548259	0.0181306
chr6	161008933	161009033	3024662	0	+	0.33	(0.32,0.35]	chr6	282304	165	INTRON	INTRON	MAP3K4	ENSG00000085511.20	ENST00000366919.6:ENST00000392142.9:ENST00000542952.5:ENST00000366920.6:ENST00000348824.11:ENST00000544041.5:ENST00000490904.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	56	2	5.13123	5.282915	5.4346	0.00394704	4.09682e-4	0.0548259	0.0181306
chr7	133645036	133645136	3422101	0	+	0.41	(0.408,0.44]	chr7	319395	145	INTRON	INTRON	EXOC4	ENSG00000131558.15	ENST00000253861.5:ENST00000479839.6:ENST00000483800.5:ENST00000469115.5:ENST00000489931.5:ENST00000482089.5:ENST00000460346.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	54	2	5.12568	5.28254	5.4394	7.90919e-4	6.50925e-4	0.0258324	0.0232863
chr22	26538831	26538928	7564548	0	-	0.505155	(0.476,0.515]	chr22	774014	20	INTRON	INTRON	TPST2	ENSG00000128294.16	ENST00000338754.9:ENST00000403880.5:ENST00000398110.6:ENST00000445720.1	protein_coding	protein_coding	protein_coding	protein_coding	1	122	2	4.59339	5.28199	5.97059	1.37724e-5	4.40584e-6	0.00276767	0.00153974
chr17	74209920	74210012	6672440	0	+	0.445652	(0.44,0.476]	chr17	651059	2	UTR3	UTR3:EXON_MRNA	RPL38	ENSG00000172809.13	ENST00000311111.11	protein_coding	protein_coding	protein_coding	protein_coding	1	119	2	3.71727	5.281715	6.84616	3.2089e-4	4.25088e-7	0.0159645	3.70271e-4
chr2	32283710	32283810	730440	0	+	0.49	(0.476,0.515]	chr2	84236	51	INTRON	INTRON	YIPF4	ENSG00000119820.11	ENST00000238831.9:ENST00000495355.1:ENST00000437765.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	116	2	4.08435	5.2813	6.47825	7.63877e-5	6.2013e-7	0.0078038	4.27699e-4
chr7	5686181	5686281	3473997	0	-	0.38	(0.378,0.408]	chr7	324821	333	INTRON	INTRON	RNF216	ENSG00000011275.19	ENST00000425013.6:ENST00000389902.8:ENST00000389900.8:ENST00000484458.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	54	2	5.23011	5.279895	5.32968	0.00119786	5.72873e-4	0.0315806	0.0217398
chr4	102819354	102819453	2213278	0	-	0.252525	[0,0.28]	chr4	216759	65	INTRON	INTRON	UBE2D3	ENSG00000109332.20	ENST00000453744.7:ENST00000394804.6:ENST00000394803.9:ENST00000394801.8:ENST00000343106.9:ENST00000503742.5:ENST00000321805.11:ENST00000350435.11:ENST00000338145.7:ENST00000349311.12:ENST00000504211.5:ENST00000357194.10:ENST00000505207.5:ENST00000507845.5:ENST00000502404.5:ENST00000508635.5:ENST00000505307.5:ENST00000510129.5:ENST00000508476.5:ENST00000502563.5:ENST00000508238.5:ENST00000514755.5:ENST00000508974.5:ENST00000502690.5:ENST00000508818.5:ENST00000503418.5:ENST00000508249.1:ENST00000513098.5:ENST00000503282.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	59	2	5.1613	5.278124999999999	5.39495	0.00866441	0.00133175	0.0787025	0.0335129
chr6	147389982	147390081	2990593	0	+	0.383838	(0.378,0.408]	chr6	280154	54	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	STXBP5	ENSG00000164506.15	ENST00000321680.11:ENST00000367481.7:ENST00000443556.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	58	2	4.77105	5.2773900000000005	5.78373	0.00330823	1.89312e-4	0.0527031	0.012565
chr9	128974731	128974830	4208134	0	+	0.444444	(0.44,0.476]	chr9	385308	11	INTRON	INTRON	NUP188	ENSG00000095319.14	ENST00000372577.2	protein_coding	protein_coding	protein_coding	protein_coding	0	56	2	4.85817	5.277125	5.69608	0.00223254	2.01872e-4	0.0435144	0.0129814
chr20	63675183	63675281	7300049	0	+	0.489796	(0.476,0.515]	chr20	742901	7	INTRON	INTRON	RTEL1	ENSG00000258366.11	ENST00000370018.7:ENST00000684971.1:ENST00000692658.1:ENST00000360203.11:ENST00000508582.7:ENST00000686756.1:ENST00000318100.9:ENST00000482936.6:ENST00000687123.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	53	2	5.25945	5.27613	5.29281	0.00111445	4.07635e-4	0.0306328	0.0181306
chr7	92582004	92582103	3570846	0	-	0.484848	(0.476,0.515]	chr7	332757	3	SS3_PROX	SS3_PROX:INTRON	FAM133B	ENSG00000234545.8	ENST00000445716.6:ENST00000438306.5:ENST00000415397.6:ENST00000481407.5:ENST00000427372.5:ENST00000480397.5:ENST00000456502.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	53	2	5.25945	5.27613	5.29281	0.00111445	4.07635e-4	0.0306328	0.0181306
chr7	111382271	111382371	3622305	0	-	0.26	[0,0.28]	chr7	337093	4184	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	136	2	3.93888	5.2760750000000005	6.61327	2.29361e-4	5.40977e-5	0.013345	0.00648822
chr3	52944291	52944390	1702625	0	-	0.444444	(0.44,0.476]	chr3	175414	3	INTRON	INTRON	SFMBT1	ENSG00000163935.14	ENST00000394752.8:ENST00000482396.5:ENST00000483069.5:ENST00000497586.5	protein_coding	protein_coding	protein_coding	protein_coding	1	112	2	4.64305	5.27603	5.90901	7.5486e-5	1.46612e-6	0.00777227	7.23574e-4
chr4	165340968	165341062	2079771	0	+	0.276596	[0,0.28]	chr4	205588	2	INTRON	INTRON	MSMO1	ENSG00000052802.13	ENST00000261507.11:ENST00000393766.6	protein_coding	protein_coding	protein_coding	protein_coding	5	304	2	3.73427	5.276015	6.81776	2.19365e-5	9.22176e-7	0.00381314	5.4494e-4
chr3	152327718	152327818	1535576	0	+	0.2	[0,0.28]	chr3	159996	254	INTRON	INTRON	MBNL1	ENSG00000152601.18	ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000495875.6:ENST00000324210.10:ENST00000493459.5:ENST00000459747.1:ENST00000460591.5:ENST00000545754.5:ENST00000357472.7:ENST00000324196.9:ENST00000498502.5:ENST00000463374.5:ENST00000485910.5:ENST00000465907.6:ENST00000492948.5:ENST00000485509.5:ENST00000464596.5	protein_coding	protein_coding	protein_coding	protein_coding	0	60	2	4.94561	5.27576	5.60591	0.0150263	6.01442e-4	0.0994339	0.0223465
chr15	48777113	48777212	6166337	0	-	0.40404	(0.378,0.408]	chr15	587640	37	INTRON	INTRON	CEP152	ENSG00000103995.14	ENST00000380950.7:ENST00000399334.7:ENST00000325747.9:ENST00000560322.5	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay	0	54	2	5.06412	5.2754200000000004	5.48672	0.0030522	1.83012e-4	0.0493883	0.01176
chr16	70666935	70667035	6511995	0	-	0.4	(0.378,0.408]	chr16	630830	10	INTRON	INTRON	MTSS2	ENSG00000132613.16	ENST00000338779.11	protein_coding	protein_coding	protein_coding	protein_coding	0	54	2	5.17281	5.2751	5.37739	0.0010014	7.27294e-4	0.0288906	0.0245647
chr4	127932980	127933036	2238228	0	-	0.321429	(0.32,0.35]	chr4	219055	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	MFSD8	ENSG00000164073.11	ENST00000296468.8:ENST00000641686.2:ENST00000641186.1:ENST00000641774.1:ENST00000641748.1:ENST00000641508.1:ENST00000641690.1:ENST00000641928.1:ENST00000641464.1:ENST00000641092.1:ENST00000641397.1:ENST00000641393.1:ENST00000641025.1:ENST00000641509.1:ENST00000642034.1:ENST00000641178.1:ENST00000641147.1:ENST00000641753.1:ENST00000641434.1:ENST00000641482.1:ENST00000641133.1:ENST00000641146.1:ENST00000641869.1:ENST00000515130.6:ENST00000641332.1:ENST00000641870.1:ENST00000641949.1:ENST00000641228.1:ENST00000641590.1:ENST00000641843.1:ENST00000642078.1:ENST00000641882.1:ENST00000641742.1:ENST00000641658.1:ENST00000513559.6:ENST00000642012.1:ENST00000509826.2:ENST00000642042.1:ENST00000641340.1:ENST00000641388.1:ENST00000641830.1:ENST00000641538.1:ENST00000641003.1:ENST00000641369.1:ENST00000642121.1:ENST00000641243.1:ENST00000505284.6:ENST00000641134.1:ENST00000641695.1:ENST00000641503.1:ENST00000641743.1:ENST00000641776.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	57	2	4.89768	5.2749500000000005	5.65222	0.00793135	1.55757e-4	0.076155	0.0106835
chr10	30337926	30338026	4587529	0	-	0.41	(0.408,0.44]	chr10	422975	5	INTRON	INTRON	MTPAP	ENSG00000107951.15	ENST00000263063.9:ENST00000488290.5:ENST00000417581.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	110	2	4.1271	5.27489	6.42268	3.62655e-5	5.98696e-6	0.00482747	0.00183779
chrX	48522652	48522752	7658422	0	+	0.46	(0.44,0.476]	chrX	783761	4	SS5_PROX	SS5_PROX:INTRON	EBP	ENSG00000147155.11	ENST00000276096.10:ENST00000498425.1:ENST00000495186.6:ENST00000446158.5:ENST00000414061.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	53	2	5.25179	5.274509999999999	5.29723	0.00124521	3.83422e-4	0.0322969	0.017699199999999998
chr6	167903184	167903284	3035112	0	+	0.43	(0.408,0.44]	chr6	282779	4	INTRON	INTRON	AFDN	ENSG00000130396.21	ENST00000683244.1:ENST00000351017.9:ENST00000344191.8:ENST00000392112.5:ENST00000392108.7:ENST00000400822.7:ENST00000447894.6:ENST00000366809.6:ENST00000366806.6:ENST00000423229.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	54	2	4.95817	5.27431	5.59045	0.00372419	9.6776e-5	0.0535094	0.00826486
chr2	37575291	37575391	745953	0	+	0.48	(0.476,0.515]	chr2	85455	37	INTRON	INTRON	ENSG00000236213	ENSG00000236213.3	ENST00000659653.1	lncRNA	lncRNA	lncRNA	lncRNA	0	53	2	5.15143	5.27426	5.39709	0.00166579	2.55871e-4	0.0369207	0.0142249
chr3	177182190	177182290	1872296	0	-	0.5	(0.476,0.515]	chr3	187438	109	INTRON	INTRON	TBL1XR1	ENSG00000177565.18	ENST00000457928.7:ENST00000430069.5:ENST00000673974.1:ENST00000352800.10:ENST00000422442.6:ENST00000428970.5:ENST00000424913.5:ENST00000437738.5:ENST00000431421.5:ENST00000635794.1:ENST00000630796.2:ENST00000450267.5:ENST00000630833.2:ENST00000431674.5:ENST00000422066.5:ENST00000443315.5:ENST00000627825.2:ENST00000427349.5:ENST00000413084.5:ENST00000637137.1:ENST00000491623.2:ENST00000637544.1:ENST00000636187.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	155	2	3.82841	5.273505	6.7186	1.48377e-5	1.21292e-7	0.00309621	1.5757e-4
chr6	7213305	7213404	2799428	0	+	0.474747	(0.44,0.476]	chr6	263771	17	EXON_MRNA	EXON_MRNA:INTRON	RREB1	ENSG00000124782.21	ENST00000379933.7:ENST00000379938.7:ENST00000349384.10:ENST00000334984.10:ENST00000475946.5:ENST00000483150.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	109	2	4.2119	5.2732	6.3345	2.22282e-5	8.50647e-6	0.00367645	0.00223301
chr1	155665566	155665664	563076	0	-	0.5	(0.476,0.515]	chr1	67145	38	INTRON	INTRON	YY1AP1	ENSG00000163374.20	ENST00000368339.9:ENST00000295566.8:ENST00000368330.6:ENST00000436865.5:ENST00000359205.9:ENST00000407221.5:ENST00000404643.5:ENST00000361140.8:ENST00000361831.9:ENST00000347088.9:ENST00000354691.9:ENST00000368340.9:ENST00000311573.9:ENST00000442834.6:ENST00000355499.9:ENST00000405763.7:ENST00000488784.5:ENST00000493625.5:ENST00000477470.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	109	2	4.3586	5.27269	6.18678	1.63637e-5	9.42612e-6	0.00324999	0.00222322
chr18	46094040	46094128	6965459	0	-	0.454545	(0.44,0.476]	chr18	689409	3	INTRON	INTRON	ATP5F1A	ENSG00000152234.16	ENST00000398752.11:ENST00000282050.6:ENST00000593152.6:ENST00000586592.5:ENST00000590665.5:ENST00000590156.5:ENST00000592364.5:ENST00000589252.5:ENST00000589869.5:ENST00000590406.5:ENST00000590324.5:ENST00000590448.5:ENST00000592989.1:ENST00000591981.5:ENST00000585650.1:ENST00000591267.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	53	2	5.14378	5.27265	5.40152	0.00184943	2.39829e-4	0.0388609	0.0136403
chr7	65890044	65890144	3323045	0	+	0.46	(0.44,0.476]	chr7	309012	161	INTRON	INTRON	VKORC1L1	ENSG00000196715.7	ENST00000360768.5:ENST00000648187.1:ENST00000648179.1:ENST00000434382.2	protein_coding	protein_coding	protein_coding	protein_coding	0	53	2	5.14378	5.27265	5.40152	0.00184943	2.39829e-4	0.0388609	0.0136403
chr11	70421189	70421279	4821855	0	+	0.411111	(0.408,0.44]	chr11	449643	3	SS3_PROX	SS3_PROX:INTRON	CTTN	ENSG00000085733.16	ENST00000346329.7:ENST00000301843.13:ENST00000376561.7:ENST00000527962.5:ENST00000483662.2:ENST00000498223.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	53	2	5.24501	5.2714	5.29779	0.00137378	3.80479e-4	0.0336718	0.0176313
chr7	148843378	148843478	3670351	0	-	0.45	(0.44,0.476]	chr7	340616	60	INTRON	INTRON	EZH2	ENSG00000106462.12	ENST00000683292.1:ENST00000320356.7:ENST00000492143.5:ENST00000478654.5:ENST00000350995.6:ENST00000460911.5:ENST00000683744.1:ENST00000682317.1:ENST00000682263.1:ENST00000684300.1:ENST00000476773.5:ENST00000483967.5:ENST00000498186.5:ENST00000483012.1:ENST00000682401.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	109	2	4.41955	5.27139	6.12323	2.60698e-5	6.27516e-6	0.0042231	0.00175994
chr5	160115307	160115407	2759759	0	-	0.48	(0.476,0.515]	chr5	260442	63	INTRON	INTRON	PWWP2A	ENSG00000170234.13	ENST00000456329.7:ENST00000523662.1:ENST00000307063.9:ENST00000520662.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	53	2	5.09423	5.270379999999999	5.44653	0.00204588	2.03754e-4	0.04086	0.0124395
chr7	105244114	105244214	3602451	0	-	0.48	(0.476,0.515]	chr7	336137	372	INTRON	INTRON	SRPK2	ENSG00000135250.17	ENST00000393651.8:ENST00000357311.7:ENST00000489828.5:ENST00000482897.5:ENST00000460391.5:ENST00000462282.5:ENST00000465112.5:ENST00000482862.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	53	2	5.09423	5.270379999999999	5.44653	0.00204588	2.03754e-4	0.04086	0.0124395
chr17	50745142	50745219	6627243	0	+	0.467532	(0.44,0.476]	chr17	647234	4	SS5_PROX	SS5_PROX:INTRON	LUC7L3	ENSG00000108848.16	ENST00000393227.6:ENST00000505658.6:ENST00000240304.5:ENST00000508482.5:ENST00000504065.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	173	2	3.67746	5.270375	6.86329	2.82837e-6	3.81963e-7	0.001075	3.44559e-4
chr8	97712274	97712372	3809748	0	+	0.510204	(0.476,0.515]	chr8	352878	52	INTRON	INTRON	MTDH	ENSG00000147649.10	ENST00000336273.8:ENST00000519934.5:ENST00000519293.1:ENST00000521933.1:ENST00000522104.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	53	2	5.18039	5.27017	5.35995	7.54256e-4	6.58744e-4	0.0251179	0.0232396
chr18	36159004	36159080	6891730	0	+	0.315789	(0.28,0.32]	chr18	683043	1	SS5_PROX	SS5_PROX:INTRON	ELP2	ENSG00000134759.14	ENST00000351393.10:ENST00000442325.6:ENST00000358232.11:ENST00000423854.6:ENST00000539560.5:ENST00000350494.10:ENST00000542824.5:ENST00000540799.1:ENST00000542050.5:ENST00000543861.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	61	2	4.66359	5.26942	5.87525	0.0193496	8.91612e-5	0.108861	0.00793468
chr1	19156594	19156666	386251	0	-	0.291667	(0.28,0.32]	chr1	45943	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	UBR4	ENSG00000127481.15	ENST00000375254.8:ENST00000417040.1:ENST00000419533.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	57	2	5.04579	5.268195	5.4906	0.00714672	4.89126e-4	0.0723634	0.0199693
chr19	39984471	39984571	7068502	0	+	0.49	(0.476,0.515]	chr19	706035	2	SS5_PROX	SS5_PROX:INTRON	ZNF546	ENSG00000187187.14	ENST00000597363.5	protein_coding	processed_transcript	protein_coding	processed_transcript	0	54	2	4.99342	5.26776	5.5421	0.00139274	3.56777e-4	0.0341261	0.0175154
chr3	48165036	48165135	1687590	0	-	0.444444	(0.44,0.476]	chr3	172300	2	INTRON	INTRON	CDC25A	ENSG00000164045.12	ENST00000302506.8:ENST00000351231.7:ENST00000459900.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	54	2	4.99782	5.266105	5.53439	0.0013223	4.05863e-4	0.0333932	0.0185763
chr1	115664007	115664094	193979	0	+	0.471264	(0.44,0.476]	chr1	21448	5	CDS	CDS:EXON_MRNA	VANGL1	ENSG00000173218.15	ENST00000355485.7:ENST00000369510.8:ENST00000310260.7:ENST00000369509.1	protein_coding	protein_coding	protein_coding	protein_coding	1	109	2	4.12562	5.266	6.40638	3.66727e-5	5.71935e-6	0.00484751	0.00177762
chr17	40409918	40410016	6768290	0	-	0.438776	(0.408,0.44]	chr17	665968	9	INTRON	INTRON	TOP2A	ENSG00000131747.15	ENST00000423485.6	protein_coding	protein_coding	protein_coding	protein_coding	0	53	2	5.07983	5.26568	5.45153	0.00247652	1.89064e-4	0.0446195	0.0119565
chr10	22572415	22572514	4579070	0	-	0.50505	(0.476,0.515]	chr10	421992	30	INTRON	INTRON	PIP4K2A	ENSG00000150867.14	ENST00000376573.9:ENST00000323883.11:ENST00000545335.5:ENST00000604912.1:ENST00000422321.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	53	2	5.03466	5.2645	5.49434	0.00252065	1.62782e-4	0.0446195	0.0109774
chr4	2598125	2598225	1913133	0	+	0.53	(0.515,0.57]	chr4	191983	14	INTRON	INTRON	RNF4:FAM193A	ENSG00000063978.16:ENSG00000125386.16	ENST00000508235.1:ENST00000637812.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	50	2	5.16413	5.264265	5.3644	8.14815e-4	1.52226e-4	0.0263656	0.0106137
chr3	33829269	33829369	1394706	0	+	0.26	[0,0.28]	chr3	146076	3	SS5_PROX	SS5_PROX:INTRON	PDCD6IP	ENSG00000170248.15	ENST00000457054.6:ENST00000648706.1:ENST00000307296.8:ENST00000412887.5:ENST00000482561.1:ENST00000487821.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	59	2	5.00263	5.26391	5.52519	0.013055	8.21427e-4	0.093385	0.0261674
chr7	77557456	77557556	3342215	0	+	0.25	[0,0.28]	chr7	311312	113	INTRON	INTRON	PTPN12	ENSG00000127947.16	ENST00000248594.11:ENST00000460731.5:ENST00000523952.5:ENST00000433369.6:ENST00000415482.6:ENST00000435495.6:ENST00000418110.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	59	2	5.00263	5.26391	5.52519	0.013055	8.21427e-4	0.093385	0.0261674
chr16	67797939	67798039	6505597	0	-	0.42	(0.408,0.44]	chr16	629654	255	INTRON	INTRON	RANBP10	ENSG00000141084.12	ENST00000317506.8:ENST00000448631.6:ENST00000602506.5:ENST00000602677.5:ENST00000602525.5:ENST00000602638.5:ENST00000602815.5:ENST00000602887.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	54	2	4.89327	5.263605	5.63394	0.00458906	7.78928e-5	0.0595107	0.00735438
chr12	6580699	6580726	5259358	0	-	0.074074	[0,0.28]	chr12	500704	1	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CHD4	ENSG00000111642.16	ENST00000645022.1:ENST00000544040.7:ENST00000544484.6:ENST00000357008.7:ENST00000647112.1:ENST00000642810.1:ENST00000642637.1:ENST00000643335.1:ENST00000643815.1:ENST00000647535.1:ENST00000646806.1:ENST00000644137.1:ENST00000642879.1:ENST00000646462.1:ENST00000644652.1:ENST00000645645.1:ENST00000642594.1:ENST00000646360.1:ENST00000646268.1:ENST00000645095.1:ENST00000644352.1:ENST00000647483.1:ENST00000646608.1:ENST00000644077.1:ENST00000643538.1:ENST00000645005.1:ENST00000644801.1:ENST00000644289.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	59	2	5.09281	5.263545000000001	5.43428	0.00400834	0.00372534	0.0561984	0.0551303
chr18	3002234	3002334	6944991	0	-	0.29	(0.28,0.32]	chr18	686840	195	INTRON	INTRON	LPIN2	ENSG00000101577.10	ENST00000261596.8:ENST00000677752.1	protein_coding	protein_coding	protein_coding	protein_coding	0	58	2	4.86731	5.26213	5.65695	0.0116253	2.41184e-4	0.0889104	0.0136674
chr18	35241596	35241690	6889358	0	+	0.351064	(0.35,0.378]	chr18	682769	7	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	ZNF397	ENSG00000186812.13	ENST00000589630.1:ENST00000330501.12:ENST00000601719.1:ENST00000591206.5:ENST00000589420.1:ENST00000355632.8:ENST00000261333.10:ENST00000585800.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	54	2	5.26125	5.26188	5.26251	0.00191117	6.20882e-4	0.03947	0.0223951
chr1	36292197	36292297	73616	0	+	0.3	(0.28,0.32]	chr1	9404	2	SS3_PROX	SS3_PROX:INTRON	THRAP3	ENSG00000054118.15	ENST00000469141.6:ENST00000648638.1:ENST00000354618.10:ENST00000466743.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	57	2	4.98872	5.261369999999999	5.53402	0.00838468	4.0843e-4	0.0774402	0.0181306
chr3	43514821	43514921	1674362	0	-	0.31	(0.28,0.32]	chr3	170972	817	INTRON	INTRON	ANO10	ENSG00000160746.13	ENST00000292246.8:ENST00000350459.8:ENST00000396091.7:ENST00000414522.6:ENST00000451430.6:ENST00000448045.1	protein_coding	protein_coding	protein_coding	protein_coding	0	57	2	4.98872	5.261369999999999	5.53402	0.00838468	4.0843e-4	0.0774402	0.0181306
chr7	23351786	23351886	3502468	0	-	0.37	(0.35,0.378]	chr7	326861	2	SS3_PROX	SS3_PROX:INTRON	IGF2BP3	ENSG00000136231.14	ENST00000258729.8:ENST00000421467.6:ENST00000468263.5:ENST00000492771.5:ENST00000479504.5:ENST00000466809.6:ENST00000491719.5:ENST00000465058.5:ENST00000469723.5:ENST00000474105.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	181	2	3.57125	5.261150000000001	6.95105	7.29801e-6	6.58111e-7	0.00191858	4.79925e-4
chr13	110878838	110878937	5650270	0	-	0.282828	(0.28,0.32]	chr13	538327	4	UTR3	UTR3:EXON_MRNA	ANKRD10	ENSG00000088448.14	ENST00000267339.6	protein_coding	protein_coding	protein_coding	protein_coding	0	57	2	5.08622	5.26096	5.4357	0.00227525	0.00215368	0.0437013	0.0417866
chr15	42853519	42853619	6158329	0	-	0.38	(0.378,0.408]	chr15	586277	127	INTRON	INTRON	TTBK2	ENSG00000128881.18	ENST00000267890.11:ENST00000567840.5:ENST00000567274.5:ENST00000564431.5:ENST00000562880.5:ENST00000566931.1	protein_coding	protein_coding	protein_coding	protein_coding	0	56	2	4.73839	5.260785	5.78318	0.00837252	4.21479e-5	0.0774402	0.0052571
chr3	48300996	48301082	1687953	0	-	0.523256	(0.515,0.57]	chr3	172398	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NME6	ENSG00000172113.10	ENST00000451657.6:ENST00000442597.6:ENST00000643011.1:ENST00000421967.5:ENST00000643457.1:ENST00000642710.1:ENST00000452211.5:ENST00000444069.5:ENST00000415644.5:ENST00000415053.5:ENST00000447314.5:ENST00000418431.5:ENST00000435684.5:ENST00000425930.5:ENST00000456495.5:ENST00000454531.1:ENST00000494209.1:ENST00000447724.1:ENST00000484959.1:ENST00000302378.2:ENST00000495734.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	51	2	4.99635	5.2603	5.52425	8.06602e-4	1.68822e-4	0.0258804	0.0119215
chr1	31927051	31927151	414322	0	-	0.38	(0.378,0.408]	chr1	49920	25	INTRON	INTRON	PTP4A2	ENSG00000184007.22	ENST00000647444.2:ENST00000649841.1:ENST00000468531.1:ENST00000534796.5:ENST00000532289.1:ENST00000526960.1:ENST00000524384.5:ENST00000528840.1:ENST00000494444.2:ENST00000529477.5:ENST00000533408.1:ENST00000475464.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	54	2	4.9425	5.26016	5.57782	0.00452675	1.18586e-4	0.0595107	0.00930884
chr1	279788	279888	353393	0	-	0.38	(0.378,0.408]	chr1	40903	106	INTRON	INTRON	ENSG00000228463	ENSG00000228463.10	ENST00000441866.2:ENST00000424587.7	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	0	54	2	5.05091	5.25962	5.46833	0.00118558	7.05018e-4	0.031662	0.024224
chr3	17508073	17508173	1628069	0	-	0.33	(0.32,0.35]	chr3	168187	2	SS5_PROX	SS5_PROX:INTRON	TBC1D5	ENSG00000131374.15	ENST00000253692.11:ENST00000696125.1:ENST00000414318.2:ENST00000429383.8:ENST00000446818.6:ENST00000415814.6:ENST00000452492.6:ENST00000412981.5:ENST00000428355.5:ENST00000425944.5:ENST00000430169.5:ENST00000445294.5:ENST00000414349.5:ENST00000443499.6:ENST00000444756.5:ENST00000497531.5:ENST00000443386.5:ENST00000507877.5:ENST00000446863.5:ENST00000434420.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	55	2	5.23327	5.258885	5.2845	0.00240071	9.33826e-4	0.0440612	0.0278746
chr2	117826041	117826099	855113	0	+	0.362069	(0.35,0.378]	chr2	96010	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DDX18	ENSG00000088205.13	ENST00000263239.7:ENST00000415038.1:ENST00000476149.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	57	2	4.82377	5.25783	5.69189	0.00325499	3.71413e-4	0.0524329	0.0178698
chr15	51830434	51830533	6027145	0	+	0.40404	(0.378,0.408]	chr15	574275	2	INTRON	INTRON	TMOD3	ENSG00000138594.14	ENST00000558455.1:ENST00000308580.12	protein_coding	protein_coding	protein_coding	protein_coding	0	53	2	5.17627	5.25728	5.33829	0.00208234	3.59275e-4	0.0411801	0.0169207
chr3	136190497	136190597	1824181	0	-	0.39	(0.378,0.408]	chr3	183518	374	INTRON	INTRON	MSL2	ENSG00000174579.4	ENST00000309993.3:ENST00000434835.2:ENST00000481989.1:ENST00000491050.1:ENST00000473093.1	protein_coding	protein_coding	protein_coding	protein_coding	0	53	2	5.17627	5.25728	5.33829	0.00208234	3.59275e-4	0.0411801	0.0169207
chr8	39074881	39074978	3739084	0	+	0.402062	(0.378,0.408]	chr8	347558	21	EXON_LNCRNA	EXON_LNCRNA:INTRON	ADAM9	ENSG00000168615.13	ENST00000678474.1:ENST00000676765.1:ENST00000676936.1:ENST00000677908.1:ENST00000677004.1:ENST00000677165.1:ENST00000481058.2:ENST00000676643.1:ENST00000676669.1:ENST00000679268.1:ENST00000677582.1:ENST00000676617.1:ENST00000677137.1:ENST00000678540.1:ENST00000677359.1:ENST00000678730.1:ENST00000487273.7:ENST00000678253.1:ENST00000676489.1:ENST00000379917.7:ENST00000468065.5:ENST00000481873.7:ENST00000676919.1:ENST00000678863.1:ENST00000484143.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	53	2	5.17627	5.25728	5.33829	0.00208234	3.59275e-4	0.0411801	0.0169207
chr12	62342456	62342555	5150385	0	+	0.393939	(0.378,0.408]	chr12	487350	59	INTRON	INTRON	USP15	ENSG00000135655.16	ENST00000353364.7:ENST00000550632.5:ENST00000280377.10	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	55	2	4.80968	5.257095	5.70451	0.00679828	6.32265e-5	0.0711802	0.00658818
chr5	173107823	173107923	2549211	0	+	0.49	(0.476,0.515]	chr5	243340	156	INTRON	INTRON	CREBRF	ENSG00000164463.12	ENST00000296953.6:ENST00000520464.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	53	2	5.05847	5.256185	5.4539	0.00108081	5.16081e-4	0.0300133	0.0208667
chr5	97199188	97199288	2436965	0	+	0.27	[0,0.28]	chr5	234107	149	INTRON	INTRON	LIX1-AS1:ENSG00000286828	ENSG00000251513.2:ENSG00000286828.1	ENST00000504578.2:ENST00000654632.1	lncRNA	lncRNA	lncRNA	lncRNA	0	58	2	5.21054	5.25582	5.3011	0.00758653	0.00185843	0.0749063	0.039946
chr4	78938046	78938145	2167787	0	-	0.434343	(0.408,0.44]	chr4	213803	24	INTRON	INTRON	PAQR3	ENSG00000163291.14	ENST00000342820.10:ENST00000512760.5:ENST00000511594.5:ENST00000512733.5:ENST00000395594.2:ENST00000515853.5:ENST00000512299.5:ENST00000508599.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	55	2	4.75398	5.255515	5.75705	0.00703931	4.13252e-5	0.0718189	0.00519938
chr11	3744008	3744108	4894626	0	-	0.35	(0.32,0.35]	chr11	458865	1	SS5_PROX	SS5_PROX:INTRON	NUP98	ENSG00000110713.17	ENST00000359171.8:ENST00000324932.12:ENST00000650171.1:ENST00000355260.7:ENST00000397004.8:ENST00000397007.8:ENST00000527104.5:ENST00000529379.1:ENST00000397013.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	55	2	5.07629	5.255445	5.4346	0.00468114	4.09682e-4	0.0600108	0.0181306
chr15	50359835	50359935	6022089	0	+	0.55	(0.515,0.57]	chr15	573922	50	EXON_LNCRNA	EXON_LNCRNA:INTRON	GABPB1-AS1	ENSG00000244879.9	ENST00000668321.1:ENST00000499624.3:ENST00000648591.1:ENST00000558593.1	lncRNA	lncRNA	lncRNA	lncRNA	0	50	2	5.12974	5.25525	5.38076	4.54392e-4	3.24968e-4	0.0192381	0.0165891
chr7	149586703	149586803	3672243	0	-	0.4	(0.378,0.408]	chr7	340834	227	INTRON	INTRON	ZNF767P	ENSG00000133624.14	ENST00000463567.5:ENST00000472212.5:ENST00000684939.1:ENST00000690388.1:ENST00000486492.5:ENST00000481762.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	53	2	5.23011	5.25522	5.28033	0.00143651	5.72873e-4	0.0340925	0.0217398
chr12	91560951	91561051	5384826	0	-	0.26	[0,0.28]	chr12	513485	537	INTRON	INTRON	ENSG00000289605	ENSG00000289605.1	ENST00000685093.1	lncRNA	lncRNA	lncRNA	lncRNA	0	58	2	5.25178	5.254965	5.25815	0.0066548	0.0022031	0.0703807	0.0435144
chr6	57133592	57133692	2878502	0	+	0.25	[0,0.28]	chr6	273276	4	SS5_PROX	SS5_PROX:INTRON	ZNF451	ENSG00000112200.17	ENST00000357489.7:ENST00000444273.6:ENST00000370706.9:ENST00000491832.6:ENST00000502749.1:ENST00000504603.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	58	2	5.25178	5.254965	5.25815	0.0066548	0.0022031	0.0703807	0.0435144
chr17	37313855	37313955	6762114	0	-	0.32	(0.28,0.32]	chr17	664944	142	INTRON	INTRON	ACACA	ENSG00000278540.5	ENST00000616317.5:ENST00000614428.4:ENST00000613146.4:ENST00000615229.4:ENST00000621960.1:ENST00000617548.1:ENST00000616352.4:ENST00000614789.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	56	2	5.15358	5.2527349999999995	5.35189	0.0052282	8.52844e-4	0.0633615	0.0264928
chr16	69574943	69575043	6380099	0	+	0.39	(0.378,0.408]	chr16	613167	60	INTRON	INTRON	NFAT5	ENSG00000102908.22	ENST00000426654.6:ENST00000349945.7:ENST00000354436.6:ENST00000627621.3:ENST00000650987.1:ENST00000567990.5:ENST00000567239.5:ENST00000393742.7:ENST00000565301.2:ENST00000566899.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	53	2	5.06412	5.25152	5.43892	0.0030522	2.28412e-4	0.0493883	0.0133228
chr7	43642561	43642661	3525498	0	-	0.38	(0.378,0.408]	chr7	328735	5	INTRON	INTRON	COA1	ENSG00000106603.20	ENST00000415076.6:ENST00000446330.6:ENST00000446564.5:ENST00000438444.5:ENST00000490251.1:ENST00000223336.11:ENST00000310564.10:ENST00000395879.5:ENST00000415798.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	53	2	5.17281	5.251245	5.32968	0.00119786	7.27294e-4	0.0315806	0.0245647
chr14	39116008	39116108	5699847	0	+	0.46	(0.44,0.476]	chr14	541814	7	INTRON	INTRON	GEMIN2	ENSG00000092208.19	ENST00000525153.6:ENST00000250379.13:ENST00000412033.7:ENST00000396249.7:ENST00000650481.1:ENST00000531684.6:ENST00000308317.12:ENST00000534684.7:ENST00000525430.1:ENST00000527381.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	115	2	3.92712	5.25098	6.57484	1.7642e-4	2.99813e-7	0.01216	2.73247e-4
chr1	55115122	55115221	464850	0	-	0.363636	(0.35,0.378]	chr1	56085	45	INTRON	INTRON	USP24	ENSG00000162402.14	ENST00000294383.7	protein_coding	protein_coding	protein_coding	protein_coding	1	122	2	4.17778	5.250625	6.32347	6.753e-5	2.81578e-6	0.00724876	0.00107271
chr20	63886626	63886711	7300904	0	+	0.541176	(0.515,0.57]	chr20	743120	2	INTRON	INTRON	TPD52L2	ENSG00000101150.18	ENST00000611972.4:ENST00000615907.4:ENST00000369927.8:ENST00000346249.9:ENST00000348257.9:ENST00000352482.8:ENST00000351424.8:ENST00000217121.9:ENST00000358548.4	protein_coding	protein_coding	protein_coding	protein_coding	1	103	2	4.09909	5.24983	6.40057	4.72555e-5	3.168e-7	0.00593159	2.82994e-4
chr15	68811045	68811145	6214878	0	-	0.39	(0.378,0.408]	chr15	593024	189	INTRON	INTRON	ANP32A	ENSG00000140350.15	ENST00000465139.6:ENST00000409628.6:ENST00000267918.9:ENST00000560303.1:ENST00000495420.5:ENST00000495764.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	174	2	3.60884	5.2496849999999995	6.89053	4.89042e-6	5.70514e-7	0.00150861	4.47249e-4
chr19	21758044	21758143	7159210	0	-	0.333333	(0.32,0.35]	chr19	723737	41	INTRON	INTRON	ZNF100	ENSG00000197020.12	ENST00000358296.11:ENST00000598026.1:ENST00000596452.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	55	2	5.12099	5.24966	5.37833	0.00174321	0.00143632	0.0375363	0.0347139
chr21	33463857	33463955	7440815	0	-	0.397959	(0.378,0.408]	chr21	759350	30	INTRON	INTRON	TMEM50B	ENSG00000142188.17	ENST00000420455.5:ENST00000542230.7:ENST00000441128.5:ENST00000442441.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	54	2	4.87762	5.24946	5.6213	0.00553849	9.58854e-5	0.0648867	0.00822887
chr3	12579323	12579422	1368108	0	+	0.484848	(0.476,0.515]	chr3	144101	22	INTRON	INTRON	MKRN2	ENSG00000075975.17	ENST00000677816.1:ENST00000677941.1:ENST00000676544.1:ENST00000677237.1:ENST00000679143.1:ENST00000676701.1:ENST00000170447.12:ENST00000411987.5:ENST00000448482.1:ENST00000677142.1:ENST00000676541.1:ENST00000677798.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	52	2	5.15143	5.24866	5.34589	0.00166579	3.224e-4	0.0369207	0.0159645
chr1	23283399	23283499	399130	0	-	0.28	[0,0.28]	chr1	47822	22	EXON_LNCRNA	EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	LINC01355	ENSG00000261326.4	ENST00000655082.1:ENST00000647667.1:ENST00000566551.1:ENST00000660265.1:ENST00000666981.1	lncRNA	lncRNA	lncRNA	lncRNA	0	58	2	5.05748	5.2485800000000005	5.43968	0.0113653	0.00113119	0.0886611	0.0308465
chr4	183211821	183211921	2084911	0	+	0.49	(0.476,0.515]	chr4	205983	24	INTRON	INTRON	WWC2	ENSG00000151718.16	ENST00000403733.8:ENST00000508614.5:ENST00000448232.6:ENST00000513834.5:ENST00000427431.5:ENST00000438543.5:ENST00000504005.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	52	2	5.23769	5.24857	5.25945	0.00111445	5.17244e-4	0.0306328	0.0203753
chr8	27441227	27441323	3720972	0	+	0.229167	[0,0.28]	chr8	345749	4	INTRON	INTRON	PTK2B	ENSG00000120899.18	ENST00000397501.5:ENST00000346049.10:ENST00000420218.3:ENST00000517339.5:ENST00000397497.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	64	2	4.63523	5.24844	5.86165	0.0139836	0.00101071	0.10247	0.0291154
chr5	54039807	54039907	2618202	0	-	0.18	[0,0.28]	chr5	248835	1278	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	58	2	5.14777	5.248335000000001	5.3489	0.00514751	0.00311898	0.062965	0.0512673
chr6	45353218	45353318	3103742	0	-	0.24	[0,0.28]	chr6	290493	299	INTRON	INTRON	SUPT3H	ENSG00000196284.17	ENST00000475057.5:ENST00000371459.6:ENST00000371460.5:ENST00000459689.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	58	2	5.14777	5.248335000000001	5.3489	0.00514751	0.00311898	0.062965	0.0512673
chr12	11170467	11170567	5269504	0	-	0.59	(0.57,1]	chr12	502268	37	INTRON	INTRON	ENSG00000275778:PRH1:ENSG00000256712	ENSG00000275778.2:ENSG00000231887.8:ENSG00000256712.1	ENST00000536668.2:ENST00000535024.6:ENST00000541977.5:ENST00000546265.1:ENST00000541175.1:ENST00000543969.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:nonsense_mediated_decay:lncRNA:processed_transcript	2	133	2	5.06678	5.24799	5.4292	7.01257e-9	2.9744e-10	2.82262e-5	2.23037e-6
chr1	6219407	6219506	5289	0	+	0.474747	(0.44,0.476]	chr1	1016	1	UTR3	UTR3:EXON_MRNA	RNF207	ENSG00000158286.13	ENST00000377939.5:ENST00000496676.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	58	2	4.61954	5.247585	5.87563	0.00506805	8.84961e-5	0.0646039	0.00842626
chr2	44419818	44419918	765918	0	+	0.36	(0.35,0.378]	chr2	86775	188	INTRON	INTRON	CAMKMT	ENSG00000143919.15	ENST00000378494.8:ENST00000402247.5:ENST00000407131.5:ENST00000403853.7:ENST00000428993.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	54	2	5.09052	5.247484999999999	5.40445	0.00123501	0.00114224	0.0326215	0.0307966
chr6	170364012	170364112	3036938	0	+	0.41	(0.408,0.44]	chr6	283078	53	INTRON	INTRON	FAM120B	ENSG00000112584.14	ENST00000630384.2:ENST00000537664.5:ENST00000476287.4:ENST00000625626.1	protein_coding	protein_coding	protein_coding	protein_coding	1	107	2	4.24103	5.246505	6.25198	1.8653e-5	1.50663e-5	0.00329969	0.00311444
chr5	69315843	69315943	2636749	0	-	0.32	(0.28,0.32]	chr5	250448	14	INTRON	INTRON	CCDC125	ENSG00000183323.13	ENST00000396496.7:ENST00000396499.5:ENST00000460090.5:ENST00000383374.6:ENST00000511257.1:ENST00000512045.5:ENST00000513172.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	56	2	5.14341	5.2455300000000005	5.34765	0.00287138	0.00185891	0.0474836	0.039946
chr7	158750023	158750123	3689006	0	-	0.22	[0,0.28]	chr7	342346	3	SS3_PROX	SS3_PROX:INTRON	ESYT2	ENSG00000117868.18	ENST00000251527.10:ENST00000275418.13:ENST00000652148.1	protein_coding	protein_coding	protein_coding	protein_coding	1	133	2	4.32443	5.245305	6.16618	3.33131e-4	3.46792e-5	0.016912	0.00469264
chr7	87178249	87178348	3345894	0	+	0.252525	[0,0.28]	chr7	311675	32	INTRON	INTRON	DMTF1	ENSG00000135164.19	ENST00000413276.6:ENST00000447863.5:ENST00000579677.5:ENST00000425406.5:ENST00000547146.6:ENST00000579850.5:ENST00000331242.12:ENST00000430405.7:ENST00000432937.6:ENST00000584619.5:ENST00000394703.9:ENST00000412139.6:ENST00000425705.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	58	2	5.00263	5.24285	5.48307	0.013055	9.62922e-4	0.093385	0.0285195
chr2	231078747	231078847	1031649	0	+	0.33	(0.32,0.35]	chr2	110164	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	PSMD1	ENSG00000173692.14	ENST00000677180.1:ENST00000677259.1:ENST00000676818.1:ENST00000679034.1:ENST00000677230.1:ENST00000678241.1:ENST00000676740.1:ENST00000678460.1:ENST00000619128.5:ENST00000677000.1:ENST00000678679.1:ENST00000678112.1:ENST00000409643.6:ENST00000677724.1:ENST00000679095.1:ENST00000676739.1:ENST00000678632.1:ENST00000677233.1:ENST00000678837.1:ENST00000676506.1:ENST00000431051.6:ENST00000308696.11:ENST00000678140.1:ENST00000373635.9:ENST00000677158.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	55	2	4.95971	5.242665000000001	5.52562	0.00663522	2.76065e-4	0.0703181	0.0147997
chr1	15628658	15628755	33592	0	+	0.257732	[0,0.28]	chr1	4084	15	INTRON	INTRON	DDI2	ENSG00000197312.12	ENST00000480945.6:ENST00000486680.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	58	2	5.09281	5.242515	5.39222	0.00453865	0.00372534	0.0595107	0.0561984
chr12	19518915	19519013	5091959	0	+	0.214286	[0,0.28]	chr12	481017	3	UTR3	UTR3:EXON_MRNA:INTRON	AEBP2	ENSG00000139154.16	ENST00000266508.14:ENST00000398864.7:ENST00000360995.8:ENST00000512223.6:ENST00000398731.3	protein_coding	protein_coding	protein_coding	protein_coding	0	58	2	5.09281	5.242515	5.39222	0.00453865	0.00372534	0.0595107	0.0561984
chr10	74058501	74058600	4455107	0	+	0.282828	(0.28,0.32]	chr10	411397	150	INTRON	INTRON	VCL	ENSG00000035403.18	ENST00000623461.3:ENST00000372755.7:ENST00000624354.3:ENST00000211998.10:ENST00000478896.2:ENST00000461383.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	180	2	3.57103	5.24207	6.91311	1.43295e-4	2.81828e-7	0.010957100000000001	2.63609e-4
chr1	179967390	179967490	267562	0	+	0.44	(0.408,0.44]	chr1	31297	119	INTRON	INTRON	CEP350	ENSG00000135837.16	ENST00000491495.2:ENST00000367607.8	protein_coding	protein_coding	protein_coding	protein_coding	0	53	2	4.89327	5.24186	5.59045	0.00458906	9.6776e-5	0.0595107	0.00826486
chr4	1294366	1294466	1909552	0	+	0.32	(0.28,0.32]	chr4	191466	40	INTRON	INTRON	MAEA	ENSG00000090316.16	ENST00000505177.6:ENST00000513301.5:ENST00000303400.9:ENST00000264750.10:ENST00000503653.5:ENST00000512308.5:ENST00000502558.5:ENST00000509254.5:ENST00000514708.5:ENST00000508634.1:ENST00000503693.1:ENST00000509531.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	57	2	4.96454	5.24161	5.51868	0.00344078	0.00162747	0.0539802	0.0367966
chr17	78815343	78815441	6846134	0	-	0.428571	(0.408,0.44]	chr17	677414	4	INTRON	INTRON	USP36	ENSG00000055483.20	ENST00000589225.5:ENST00000592231.6:ENST00000449938.7:ENST00000542802.7:ENST00000693020.1:ENST00000312010.10:ENST00000588086.6:ENST00000588467.5:ENST00000586066.3:ENST00000590312.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	52	2	5.18536	5.240740000000001	5.29612	0.00113523	6.17381e-4	0.0307488	0.0223951
chr16	72092372	72092471	6514979	0	-	0.383838	(0.378,0.408]	chr16	631255	12	INTRON	INTRON	TXNL4B	ENSG00000140830.9	ENST00000562153.5:ENST00000268483.8:ENST00000423037.5:ENST00000426362.6:ENST00000565171.5:ENST00000569767.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	55	2	4.84627	5.240449999999999	5.63463	0.00254319	3.59226e-4	0.0465056	0.0175484
chr17	38852225	38852319	6765123	0	-	0.393617	(0.378,0.408]	chr17	665397	7	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	RPL23	ENSG00000125691.14	ENST00000479035.7:ENST00000394333.5:ENST00000394332.5:ENST00000584912.5:ENST00000245857.9:ENST00000577407.5:ENST00000470646.1:ENST00000378096.3:ENST00000577760.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	55	2	4.84627	5.240449999999999	5.63463	0.00254319	3.59226e-4	0.0465056	0.0175484
chr6	151002543	151002643	2999251	0	+	0.49	(0.476,0.515]	chr6	280599	170	INTRON	INTRON	MTHFD1L	ENSG00000120254.16	ENST00000611279.4:ENST00000367321.8:ENST00000618312.4:ENST00000478643.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	113	2	3.97885	5.24034	6.50183	1.30749e-4	5.30801e-7	0.0103941	3.93146e-4
chr4	55431658	55431756	2148727	0	-	0.285714	(0.28,0.32]	chr4	211415	39	UTR3	UTR3:EXON_MRNA	CLOCK	ENSG00000134852.15	ENST00000513440.6:ENST00000309964.8	protein_coding	protein_coding	protein_coding	protein_coding	0	56	2	4.98872	5.23966	5.4906	0.00838468	4.89126e-4	0.0774402	0.0199693
chr2	24551388	24551488	709858	0	+	0.21	[0,0.28]	chr2	82200	588	INTRON	INTRON	NCOA1	ENSG00000084676.16	ENST00000348332.8:ENST00000496333.5:ENST00000406961.5:ENST00000469850.5:ENST00000405141.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	60	2	4.75964	5.23937	5.7191	0.0232081	3.82357e-4	0.118148	0.0176949
chr3	9652223	9652323	1359793	0	+	0.45	(0.44,0.476]	chr3	142842	13	INTRON	INTRON	MTMR14	ENSG00000163719.20	ENST00000353332.9:ENST00000420925.5:ENST00000447144.5:ENST00000296003.9:ENST00000430020.5:ENST00000351233.9:ENST00000416864.5:ENST00000437997.1:ENST00000480578.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	52	2	5.12513	5.2387	5.35227	8.47974e-4	7.96486e-4	0.0267232	0.0258804
chr6	98937068	98937167	3165481	0	-	0.444444	(0.44,0.476]	chr6	295225	18	INTRON	INTRON	FBXL4	ENSG00000112234.9	ENST00000369244.7:ENST00000229971.2	protein_coding	protein_coding	protein_coding	protein_coding	0	52	2	5.12513	5.2387	5.35227	8.47974e-4	7.96486e-4	0.0267232	0.0258804
chr19	4425869	4425969	7002000	0	+	0.27	[0,0.28]	chr19	694544	16	INTRON	INTRON	CHAF1A	ENSG00000167670.16	ENST00000301280.10:ENST00000587739.1:ENST00000585371.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	60	2	4.84931	5.23862	5.62793	0.00779241	0.0022037	0.0787356	0.0417893
chr5	104110302	104110402	2441518	0	+	0.26	[0,0.28]	chr5	234410	50	INTRON	INTRON	LINC02163	ENSG00000251026.2	ENST00000662211.1:ENST00000666145.1	lncRNA	lncRNA	lncRNA	lncRNA	1	131	2	4.12304	5.23811	6.35318	1.59966e-4	9.55979e-5	0.0115755	0.00822576
chr9	123165220	123165318	4339435	0	-	0.459184	(0.44,0.476]	chr9	398906	38	INTRON	INTRON	STRBP	ENSG00000165209.19	ENST00000348403.10:ENST00000447404.6:ENST00000360998.3:ENST00000407982.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	54	2	4.85817	5.2378350000000005	5.6175	0.00223254	2.84938e-4	0.0435144	0.015495
chr2	99474857	99474957	1189730	0	-	0.4	(0.378,0.408]	chr2	127721	95	INTRON	INTRON	REV1	ENSG00000135945.10	ENST00000393445.7:ENST00000258428.8:ENST00000413697.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	53	2	4.9425	5.237745	5.53299	0.00452675	1.47095e-4	0.0595107	0.0105341
chr19	57832157	57832257	7105849	0	+	0.57	(0.515,0.57]	chr19	713206	12	INTRON	INTRON	ENSG00000268750:ZNF587B	ENSG00000268750.7:ENSG00000269343.9	ENST00000597134.5:ENST00000651253.2:ENST00000596498.2:ENST00000593873.6:ENST00000603271.1:ENST00000594328.1:ENST00000598031.1:ENST00000442832.8:ENST00000594901.2:ENST00000604231.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	49	2	5.16413	5.23667	5.30921	8.14815e-4	1.98811e-4	0.0263656	0.0122787
chr20	32423176	32423276	7256475	0	+	0.43	(0.408,0.44]	chr20	737076	508	INTRON	INTRON	ASXL1	ENSG00000171456.21	ENST00000651418.1:ENST00000375687.10:ENST00000613218.4:ENST00000644587.1:ENST00000620121.4:ENST00000646985.1:ENST00000643168.1:ENST00000306058.9:ENST00000645688.1:ENST00000470145.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	52	2	5.02028	5.235905	5.45153	0.00303216	1.89064e-4	0.0493883	0.0119565
chr16	20834413	20834512	6318249	0	+	0.40404	(0.378,0.408]	chr16	604760	9	INTRON	INTRON	REXO5	ENSG00000005189.20	ENST00000566993.5:ENST00000348433.10:ENST00000261377.11:ENST00000564274.5:ENST00000561474.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	54	2	4.91776	5.23582	5.55388	0.00196368	5.01023e-4	0.0411469	0.0206993
chr3	196078597	196078695	1897525	0	-	0.418367	(0.408,0.44]	chr3	189991	11	INTRON	INTRON	TFRC	ENSG00000072274.13	ENST00000420415.5:ENST00000360110.9:ENST00000392396.7:ENST00000421258.1:ENST00000464011.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	54	2	4.75398	5.235575000000001	5.71717	0.00703931	5.09043e-5	0.0718189	0.00585477
chr15	44579725	44579825	6163891	0	-	0.33	(0.32,0.35]	chr15	587255	43	INTRON	INTRON	SPG11	ENSG00000104133.16	ENST00000684235.1:ENST00000261866.12:ENST00000559511.6:ENST00000682065.1:ENST00000682669.1:ENST00000683496.1:ENST00000682460.1:ENST00000682495.1:ENST00000684038.1:ENST00000683186.1:ENST00000683734.1:ENST00000683753.1:ENST00000535302.6:ENST00000427534.6:ENST00000561391.2:ENST00000558319.5:ENST00000684676.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	54	2	5.18415	5.235225	5.2863	0.00333629	7.56575e-4	0.0512081	0.0251966
chr16	21962966	21963048	6319640	0	+	0.341463	(0.32,0.35]	chr16	604983	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	UQCRC2	ENSG00000140740.11	ENST00000268379.9:ENST00000561553.5:ENST00000567757.1:ENST00000563898.5:ENST00000565331.5:ENST00000567597.1:ENST00000563711.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	54	2	5.18415	5.235225	5.2863	0.00333629	7.56575e-4	0.0512081	0.0251966
chr10	915295	915395	4542423	0	-	0.26	[0,0.28]	chr10	419304	119	INTRON	INTRON	LARP4B	ENSG00000107929.16	ENST00000316157.8:ENST00000690516.1:ENST00000476529.5:ENST00000406525.6:ENST00000481118.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	58	2	5.03568	5.23498	5.43428	0.00446141	0.00400834	0.0610799	0.0551303
chr15	78297180	78297278	6239912	0	-	0.377551	(0.35,0.378]	chr15	595628	10	INTRON	INTRON	WDR61	ENSG00000140395.9	ENST00000267973.7:ENST00000558311.5:ENST00000558459.5:ENST00000560569.5:ENST00000560610.5:ENST00000559848.1:ENST00000560063.5:ENST00000559700.5:ENST00000558840.1:ENST00000560946.1:ENST00000561347.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	53	2	5.10226	5.234495	5.3667299999999996	0.00327038	3.99274e-4	0.0508595	0.0179401
chr17	30391121	30391220	6588232	0	+	0.373737	(0.35,0.378]	chr17	640647	55	INTRON	INTRON	CPD	ENSG00000108582.12	ENST00000225719.9:ENST00000543464.6	protein_coding	protein_coding	protein_coding	protein_coding	0	53	2	5.10226	5.234495	5.3667299999999996	0.00327038	3.99274e-4	0.0508595	0.0179401
chr16	47663078	47663176	6345348	0	+	0.326531	(0.32,0.35]	chr16	609002	9	INTRON	INTRON	PHKB	ENSG00000102893.17	ENST00000566044.5:ENST00000299167.12:ENST00000696809.1:ENST00000323584.10:ENST00000568171.1:ENST00000566275.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	54	2	5.13123	5.2343399999999995	5.33745	0.00394704	6.1485e-4	0.0548259	0.0223951
chr19	55193422	55193520	7213307	0	-	0.377551	(0.35,0.378]	chr19	732652	13	INTRON	INTRON	PTPRH	ENSG00000080031.10	ENST00000376350.8:ENST00000263434.5	protein_coding	protein_coding	protein_coding	protein_coding	0	53	2	5.20743	5.2343399999999995	5.26125	0.00191117	7.78116e-4	0.03947	0.0256531
chr22	20491557	20491644	7557485	0	-	0.367816	(0.35,0.378]	chr22	772813	1	SS3_PROX	SS3_PROX:SS5_PROX:INTRON	KLHL22	ENSG00000099910.17	ENST00000328879.9:ENST00000479601.5:ENST00000451553.1:ENST00000444967.5:ENST00000458248.5:ENST00000443285.5:ENST00000494929.5:ENST00000431430.1:ENST00000470335.1:ENST00000490556.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	53	2	5.20743	5.2343399999999995	5.26125	0.00191117	7.78116e-4	0.03947	0.0256531
chr9	122291448	122291548	4194379	0	+	0.35	(0.32,0.35]	chr9	382694	3	SS3_PROX	SS3_PROX:INTRON	MRRF	ENSG00000148187.18	ENST00000297908.7:ENST00000344641.8:ENST00000373723.9:ENST00000373729.5:ENST00000373728.6:ENST00000470366.5:ENST00000467864.5:ENST00000489572.5:ENST00000394315.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	54	2	5.13123	5.2343399999999995	5.33745	0.00394704	6.1485e-4	0.0548259	0.0223951
chr19	2122957	2123057	7115248	0	-	0.51	(0.476,0.515]	chr19	715207	2	SS5_PROX	SS5_PROX:INTRON	AP3D1	ENSG00000065000.19	ENST00000643116.3:ENST00000345016.9:ENST00000644728.1:ENST00000643010.1:ENST00000590683.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	53	2	4.83962	5.234275	5.62893	0.00480934	8.45697e-5	0.0602209	0.00776967
chr7	98934294	98934392	3359835	0	+	0.346939	(0.32,0.35]	chr7	313502	5	INTRON	INTRON	TRRAP	ENSG00000196367.14	ENST00000355540.7:ENST00000359863.8:ENST00000628380.2:ENST00000456197.2:ENST00000446306.7	protein_coding	protein_coding	protein_coding	protein_coding	0	54	2	5.23327	5.234235	5.2352	0.0028268	9.33826e-4	0.0472361	0.0278746
chr19	58393670	58393762	7107647	0	+	0.304348	(0.28,0.32]	chr19	713453	3	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	RPS5	ENSG00000083845.9	ENST00000601521.5:ENST00000596314.5:ENST00000598098.5:ENST00000196551.8:ENST00000598495.5:ENST00000598807.1:ENST00000596046.1:ENST00000599232.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	59	2	4.76031	5.23385	5.70739	0.00656106	8.32651e-4	0.0735539	0.0266389
chr19	10170432	10170530	7134619	0	-	0.489796	(0.476,0.515]	chr19	719202	17	INTRON	INTRON	DNMT1	ENSG00000130816.17	ENST00000340748.8:ENST00000359526.9:ENST00000592705.5:ENST00000679103.1:ENST00000677634.1:ENST00000676820.1:ENST00000677250.1:ENST00000677013.1:ENST00000677685.1:ENST00000677616.1:ENST00000676604.1:ENST00000678024.1:ENST00000676610.1:ENST00000678804.1:ENST00000679313.1:ENST00000677946.1:ENST00000586988.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	52	2	5.05847	5.233079999999999	5.40769	0.00108081	6.23078e-4	0.0300133	0.0229151
chr18	21786952	21787052	6880199	0	+	0.34	(0.32,0.35]	chr18	681898	69	INTRON	INTRON	MIB1	ENSG00000101752.13	ENST00000578646.5:ENST00000261537.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	55	2	4.99922	5.23282	5.46642	0.00223907	0.00127669	0.0435144	0.0326395
chr20	4002361	4002461	7309276	0	-	0.32	(0.28,0.32]	chr20	744300	276	INTRON	INTRON	RNF24	ENSG00000101236.17	ENST00000336095.10:ENST00000358395.11:ENST00000545616.2	protein_coding	protein_coding	protein_coding	protein_coding	0	56	2	4.92929	5.231655	5.53402	0.0098607	4.0843e-4	0.0838128	0.0181306
chr3	158272353	158272453	1539906	0	+	0.33	(0.32,0.35]	chr3	160296	407	INTRON	INTRON	RSRC1	ENSG00000174891.14	ENST00000480820.5:ENST00000295930.7:ENST00000471994.5:ENST00000683733.1:ENST00000682221.1:ENST00000683831.1:ENST00000683516.1:ENST00000482822.3:ENST00000476899.6:ENST00000464171.5:ENST00000611884.5:ENST00000682164.1:ENST00000684604.1:ENST00000683899.1:ENST00000682500.1:ENST00000684683.1:ENST00000312179.10:ENST00000475278.6:ENST00000480119.5:ENST00000471911.5:ENST00000683137.1:ENST00000477788.5:ENST00000496268.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	54	2	5.17822	5.2313600000000005	5.2845	0.00240071	0.00115625	0.0440612	0.0313436
chr7	156796440	156796493	3687042	0	-	0.339623	(0.32,0.35]	chr7	342061	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	LMBR1	ENSG00000105983.23	ENST00000353442.10:ENST00000448926.5:ENST00000415428.5:ENST00000454132.5:ENST00000434503.5:ENST00000430278.5:ENST00000434278.5:ENST00000444719.5:ENST00000461469.5:ENST00000414218.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	54	2	5.17822	5.2313600000000005	5.2845	0.00240071	0.00115625	0.0440612	0.0313436
chr15	94898614	94898713	6105615	0	+	0.20202	[0,0.28]	chr15	581666	414	INTRON	INTRON	ENSG00000277654	ENSG00000277654.6	ENST00000618611.4:ENST00000648065.1:ENST00000618377.1:ENST00000621842.4:ENST00000615751.4:ENST00000614581.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	0	57	2	5.21054	5.23116	5.25178	0.00758653	0.0022031	0.0749063	0.0435144
chr3	138655089	138655188	1829670	0	-	0.363636	(0.35,0.378]	chr3	183912	25	UTR3	UTR3:EXON_MRNA	PIK3CB	ENSG00000051382.9	ENST00000674063.1:ENST00000289153.6:ENST00000477593.5:ENST00000469284.6:ENST00000544716.5:ENST00000462898.5:ENST00000481749.5:ENST00000493568.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	111	2	4.32474	5.230805	6.13687	5.13037e-5	1.40122e-5	0.0062158	0.00279368
chr6	33407866	33407965	2847116	0	+	0.565657	(0.515,0.57]	chr6	268696	6	INTRON	INTRON	KIFC1	ENSG00000237649.8	ENST00000428849.7	protein_coding	protein_coding	protein_coding	protein_coding	1	102	2	4.28924	5.230725	6.17221	1.58313e-5	1.49517e-6	0.00318411	7.32023e-4
chr6	16289318	16289417	2826486	0	+	0.373737	(0.35,0.378]	chr6	265384	31	INTRON	INTRON	GMPR	ENSG00000137198.10	ENST00000259727.5:ENST00000543191.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	53	2	5.15016	5.23037	5.31058	0.00160599	9.78549e-4	0.0364977	0.0287765
chr6	38680530	38680628	3090047	0	-	0.357143	(0.35,0.378]	chr6	289103	28	INTRON	INTRON	GLO1	ENSG00000124767.7	ENST00000373365.5:ENST00000470973.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	53	2	5.15016	5.23037	5.31058	0.00160599	9.78549e-4	0.0364977	0.0287765
chr18	742129	742225	6939994	0	-	0.40625	(0.378,0.408]	chr18	686473	20	INTRON	INTRON	YES1	ENSG00000176105.14	ENST00000584307.5:ENST00000314574.5:ENST00000577961.5	protein_coding	protein_coding	protein_coding	protein_coding	0	52	2	5.12128	5.229785	5.33829	0.00251746	3.59275e-4	0.0446195	0.0169207
chr13	51959204	51959298	5596380	0	-	0.404255	(0.378,0.408]	chr13	534936	8	EXON_MRNA	EXON_MRNA:INTRON	ATP7B	ENSG00000123191.16	ENST00000242839.10:ENST00000344297.9:ENST00000674147.1:ENST00000634810.1:ENST00000448424.7:ENST00000634620.1:ENST00000634296.1:ENST00000400370.8:ENST00000634844.1:ENST00000673772.1:ENST00000634308.1:ENST00000418097.7:ENST00000400366.6:ENST00000635406.1:ENST00000482841.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	52	2	5.22924	5.229675	5.23011	0.00172721	5.72873e-4	0.0374701	0.0217398
chr4	76147113	76147204	2164437	0	-	0.417582	(0.408,0.44]	chr4	213502	4	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	NUP54	ENSG00000138750.16	ENST00000695546.1:ENST00000695547.1:ENST00000695552.1:ENST00000507257.6:ENST00000264883.8:ENST00000515460.6:ENST00000695554.1:ENST00000695553.1:ENST00000695551.1:ENST00000695556.1:ENST00000695549.1:ENST00000695550.1:ENST00000695555.1:ENST00000514987.6:ENST00000502850.5:ENST00000508465.6:ENST00000512151.5:ENST00000504173.1:ENST00000695557.1:ENST00000514307.5:ENST00000508583.6:ENST00000506098.5:ENST00000510884.5:ENST00000513352.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	107	2	4.03533	5.229005	6.42268	6.08082e-5	5.98696e-6	0.00644153	0.00183779
chr1	180476491	180476591	595572	0	-	0.41	(0.408,0.44]	chr1	71198	459	INTRON	INTRON	ACBD6	ENSG00000230124.8	ENST00000645415.1:ENST00000642319.1:ENST00000367595.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	52	2	4.95817	5.228755	5.49934	0.00372419	1.5076e-4	0.0535094	0.0106137
chr2	199407220	199407320	1308742	0	-	0.43	(0.408,0.44]	chr2	136882	90	INTRON	INTRON	SATB2	ENSG00000119042.17	ENST00000614512.4:ENST00000417098.6:ENST00000260926.9:ENST00000443023.5:ENST00000428695.5:ENST00000457245.5:ENST00000484124.1:ENST00000440919.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	52	2	4.95817	5.228755	5.49934	0.00372419	1.5076e-4	0.0535094	0.0106137
chr20	6028075	6028171	7230772	0	+	0.302083	(0.28,0.32]	chr20	734852	15	INTRON	INTRON	CRLS1	ENSG00000088766.12	ENST00000452938.5:ENST00000378863.9:ENST00000378868.4:ENST00000489345.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	55	2	5.15358	5.2280549999999995	5.30253	0.0052282	0.0010319	0.0633615	0.0294094
chrX	44906485	44906585	7648935	0	+	0.31	(0.28,0.32]	chrX	782726	321	INTRON	INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000675440.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000621147.5:ENST00000475233.1:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	55	2	5.15358	5.2280549999999995	5.30253	0.0052282	0.0010319	0.0633615	0.0294094
chr17	59958297	59958397	6803179	0	-	0.31	(0.28,0.32]	chr17	671999	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	RNFT1	ENSG00000189050.16	ENST00000305783.13:ENST00000482446.5:ENST00000466544.5:ENST00000486103.6:ENST00000484257.1:ENST00000589113.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	55	2	5.2046	5.228005	5.25141	0.00448664	0.00125199	0.0593175	0.0328543
chr10	38394792	38394891	4603006	0	-	0.383838	(0.378,0.408]	chr10	424056	13	INTRON	INTRON	SEPTIN7P9	ENSG00000120555.14	ENST00000475691.5:ENST00000686819.1:ENST00000489259.5:ENST00000604116.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	53	2	4.87762	5.22772	5.57782	0.00553849	1.18586e-4	0.0648867	0.00930884
chr21	38034313	38034413	7463224	0	-	0.38	(0.378,0.408]	chr21	760277	238	INTRON	INTRON	DSCR4	ENSG00000184029.9	ENST00000398948.5	lncRNA	lncRNA	lncRNA	lncRNA	0	53	2	4.87762	5.22772	5.57782	0.00553849	1.18586e-4	0.0648867	0.00930884
chrX	24159417	24159517	7631098	0	+	0.34	(0.32,0.35]	chrX	781525	62	INTRON	INTRON	ZFX	ENSG00000005889.16	ENST00000428571.5:ENST00000539115.5:ENST00000379188.7:ENST00000304543.10:ENST00000419690.5:ENST00000379177.5:ENST00000459724.1:ENST00000480195.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	54	2	5.01917	5.226884999999999	5.4346	0.0055659	4.09682e-4	0.0648867	0.0181306
chr19	49819950	49820049	7091287	0	+	0.393939	(0.378,0.408]	chr19	710433	1	INTRON	INTRON	MED25	ENSG00000104973.19	ENST00000593767.3:ENST00000312865.10:ENST00000538643.5:ENST00000595185.5	protein_coding	protein_coding	protein_coding	protein_coding	0	52	2	5.06412	5.2268	5.38948	0.0030522	2.85992e-4	0.0493883	0.0150568
chrX	121207332	121207432	7715263	0	+	0.32	(0.28,0.32]	chrX	789390	211	INTRON	INTRON	ENSG00000286163	ENSG00000286163.1	ENST00000651788.1	lncRNA	lncRNA	lncRNA	lncRNA	0	55	2	5.10069	5.2262900000000005	5.35189	0.00610574	8.52844e-4	0.0676501	0.0264928
chr15	58899204	58899292	6193778	0	-	0.272727	[0,0.28]	chr15	590077	5	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SLTM	ENSG00000137776.17	ENST00000380516.7:ENST00000492526.5:ENST00000557924.5:ENST00000558756.5:ENST00000249736.11:ENST00000559305.5:ENST00000480144.5:ENST00000628684.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	57	2	5.05748	5.226215	5.39495	0.0113653	0.00133175	0.0886611	0.0335129
chr16	18158169	18158269	6454216	0	-	0.18	[0,0.28]	chr16	621964	67	INTRON	INTRON	ENSG00000260242	ENSG00000260242.1	ENST00000563866.1	lncRNA	lncRNA	lncRNA	lncRNA	0	57	2	5.05748	5.226215	5.39495	0.0113653	0.00133175	0.0886611	0.0335129
chr21	46423107	46423203	7422247	0	+	0.177083	[0,0.28]	chr21	756886	6	INTRON	INTRON	PCNT	ENSG00000160299.18	ENST00000695558.1:ENST00000359568.10:ENST00000480896.5:ENST00000695527.1:ENST00000695528.1:ENST00000695529.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	57	2	5.05748	5.226215	5.39495	0.0113653	0.00133175	0.0886611	0.0335129
chr3	155880049	155880149	1537221	0	+	0.31	(0.28,0.32]	chr3	160082	88	INTRON	INTRON	GMPS	ENSG00000163655.16	ENST00000496455.7:ENST00000295920.7	protein_coding	protein_coding	protein_coding	protein_coding	0	55	2	5.19842	5.22615	5.25388	0.00385849	0.00152333	0.0542786	0.0360297
chr1	175954425	175954525	589164	0	-	0.21	[0,0.28]	chr1	70870	68	INTRON	INTRON	COP1	ENSG00000143207.21	ENST00000367669.8:ENST00000367667.5:ENST00000461830.6:ENST00000367666.5:ENST00000649803.1:ENST00000308769.12	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	57	2	5.14777	5.226005000000001	5.30424	0.00584781	0.00311898	0.0667594	0.0512673
chr10	17671679	17671778	4399542	0	+	0.232323	[0,0.28]	chr10	406156	108	INTRON	INTRON	STAM	ENSG00000136738.15	ENST00000377524.8:ENST00000377500.1:ENST00000445846.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	64	2	4.46726	5.22544	5.98362	0.0427997	1.23405e-4	0.148082	0.00949832
chr12	120192688	120192787	5433240	0	-	0.525253	(0.515,0.57]	chr12	519339	19	INTRON	INTRON	GCN1	ENSG00000089154.11	ENST00000300648.7	protein_coding	protein_coding	protein_coding	protein_coding	0	50	2	4.83764	5.225065000000001	5.61249	0.00279527	4.24748e-5	0.0469265	0.00526976
chr18	36170296	36170379	6891857	0	+	0.409639	(0.408,0.44]	chr18	683081	1	SS5_PROX	SS5_PROX:INTRON	ELP2	ENSG00000134759.14	ENST00000351393.10:ENST00000442325.6:ENST00000358232.11:ENST00000423854.6:ENST00000539560.5:ENST00000350494.10:ENST00000542824.5:ENST00000540766.5:ENST00000545302.5:ENST00000541748.5:ENST00000536830.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	106	2	4.42103	5.22473	6.02843	4.71156e-5	6.19506e-6	0.00593131	0.00174887
chr7	77554766	77554866	3342188	0	+	0.49	(0.476,0.515]	chr7	311312	86	INTRON	INTRON	PTPN12	ENSG00000127947.16	ENST00000248594.11:ENST00000460731.5:ENST00000523952.5:ENST00000433369.6:ENST00000415482.6:ENST00000435495.6:ENST00000418110.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	52	2	4.90761	5.22411	5.54061	0.00386428	1.30462e-4	0.0542786	0.00983066
chr1	160321051	160321150	572090	0	-	0.252525	[0,0.28]	chr1	69341	66	INTRON	INTRON	COPA	ENSG00000122218.17	ENST00000241704.8:ENST00000696204.1:ENST00000696203.1:ENST00000696202.1:ENST00000649963.1:ENST00000696208.1:ENST00000696207.1:ENST00000696206.1:ENST00000649676.1:ENST00000368069.7:ENST00000647693.1:ENST00000649787.1:ENST00000650154.1:ENST00000647799.1:ENST00000648805.1:ENST00000647683.1:ENST00000649231.1:ENST00000648501.1:ENST00000696209.1:ENST00000696210.1:ENST00000696211.1:ENST00000647899.1:ENST00000696212.1:ENST00000696214.1:ENST00000696213.1:ENST00000696215.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	60	2	4.69191	5.2234300000000005	5.75495	0.0269474	3.2999e-4	0.123442	0.0161352
chr6	37848700	37848800	2857322	0	+	0.28	[0,0.28]	chr6	270225	283	INTRON	INTRON	ZFAND3	ENSG00000156639.12	ENST00000287218.9:ENST00000373391.6:ENST00000474522.5	protein_coding	protein_coding	protein_coding	protein_coding	0	60	2	4.69191	5.2234300000000005	5.75495	0.0269474	3.2999e-4	0.123442	0.0161352
chr15	84683029	84683129	6251693	0	-	0.3	(0.28,0.32]	chr15	596666	18	INTRON	INTRON	SEC11A	ENSG00000140612.14	ENST00000559729.5:ENST00000268220.12:ENST00000560266.5:ENST00000558134.5:ENST00000558217.5:ENST00000455959.7:ENST00000560409.5:ENST00000558196.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	55	2	5.04579	5.2227049999999995	5.39962	0.00714672	7.06751e-4	0.0723634	0.0241881
chr16	15073280	15073380	6450226	0	-	0.52	(0.515,0.57]	chr16	621482	2	SS3_PROX	SS3_PROX:INTRON	RRN3	ENSG00000085721.13	ENST00000198767.11:ENST00000563559.5:ENST00000429751.6:ENST00000327307.11	protein_coding	protein_coding	protein_coding	protein_coding	0	49	2	5.06459	5.222675000000001	5.38076	6.03964e-4	3.24968e-4	0.0223465	0.0165891
chr17	78184461	78184554	6844657	0	-	0.516129	(0.515,0.57]	chr17	677225	3	INTRON	INTRON	TK1	ENSG00000167900.12	ENST00000301634.12:ENST00000588734.5:ENST00000590862.5:ENST00000590430.5:ENST00000586613.1:ENST00000592126.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	49	2	5.06459	5.222675000000001	5.38076	6.03964e-4	3.24968e-4	0.0223465	0.0165891
chr2	70231254	70231354	1152293	0	-	0.51	(0.476,0.515]	chr2	123101	4	SS3_PROX	SS3_PROX:INTRON	C2orf42:TIA1	ENSG00000115998.8:ENSG00000116001.17	ENST00000470096.1:ENST00000415783.6:ENST00000433529.7:ENST00000282574.8:ENST00000445587.5:ENST00000416149.6:ENST00000474809.6:ENST00000477044.6:ENST00000361692.4:ENST00000496452.5:ENST00000481650.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	51	2	5.15143	5.22212	5.29281	0.00166579	4.07635e-4	0.0369207	0.0181306
chr5	6735709	6735809	2316058	0	+	0.46	(0.44,0.476]	chr5	224267	202	INTRON	INTRON	TENT4A	ENSG00000112941.14	ENST00000230859.8:ENST00000515721.1:ENST00000631941.2	protein_coding	protein_coding	protein_coding	protein_coding	1	112	2	4.03457	5.22208	6.40959	1.03446e-4	8.98096e-7	0.00915599	5.37848e-4
chr4	184701381	184701450	2304555	0	-	0.376812	(0.35,0.378]	chr4	222912	1	INTRON	INTRON	CENPU	ENSG00000151725.12	ENST00000281453.10:ENST00000510146.5:ENST00000508095.1:ENST00000506535.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	119	2	4.044	5.2215799999999994	6.39916	1.3063e-4	1.77488e-6	0.0103941	8.01078e-4
chr16	90187582	90187682	6424767	0	+	0.16	[0,0.28]	chr16	617261	3	SS5_PROX	SS5_PROX:INTRON	LINC02193	ENSG00000260923.7	ENST00000568418.1:ENST00000656587.1:ENST00000668099.1:ENST00000569162.2:ENST00000665776.1:ENST00000669853.1:ENST00000668039.1:ENST00000658135.1:ENST00000663101.1:ENST00000663757.1:ENST00000568947.2	lncRNA	lncRNA	lncRNA	lncRNA	0	61	2	4.71017	5.221465	5.73276	0.0114708	0.00156565	0.0956037	0.0360583
chr11	134183553	134183653	5054760	0	-	0.29	(0.28,0.32]	chr11	477153	4	SS3_PROX	SS3_PROX:INTRON	NCAPD3	ENSG00000151503.14	ENST00000534548.7:ENST00000692494.1:ENST00000688672.1:ENST00000534532.7:ENST00000689387.1:ENST00000688263.1:ENST00000525964.7:ENST00000690149.1:ENST00000687480.1:ENST00000690743.1:ENST00000685324.1:ENST00000689205.1:ENST00000525432.2:ENST00000687155.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	56	2	4.96454	5.221165	5.47779	0.00344078	0.00187048	0.0539802	0.0390476
chr16	22492524	22492624	6322530	0	+	0.31	(0.28,0.32]	chr16	605439	3	INTRON	INTRON	NPIPB5	ENSG00000243716.11	ENST00000415654.5:ENST00000415833.6:ENST00000546168.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	249	2	2.90609	5.2207	7.53531	8.42669e-5	1.29547e-7	0.00775927	1.72161e-4
chr19	45837571	45837668	7193595	0	-	0.402062	(0.378,0.408]	chr19	728610	20	INTRON	INTRON	SYMPK	ENSG00000125755.19	ENST00000245934.12:ENST00000593504.5:ENST00000600237.5:ENST00000599460.5:ENST00000599814.5:ENST00000598896.5:ENST00000593899.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	54	2	4.84627	5.2205449999999995	5.59482	0.00254319	4.23783e-4	0.0465056	0.0189958
chr15	72578541	72578640	6060217	0	+	0.333333	(0.32,0.35]	chr15	576921	58	INTRON	INTRON	ARIH1	ENSG00000166233.15	ENST00000379887.9:ENST00000561987.5:ENST00000565950.1:ENST00000561770.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	54	2	4.95971	5.22027	5.48083	0.00663522	3.35843e-4	0.0703181	0.0162819
chr1	96790336	96790436	168638	0	+	0.33	(0.32,0.35]	chr1	18249	47	INTRON	INTRON	PTBP2	ENSG00000117569.19	ENST00000482253.5:ENST00000675735.1:ENST00000609116.5:ENST00000674951.1:ENST00000675080.1:ENST00000426398.3:ENST00000370197.5:ENST00000370198.5:ENST00000476419.5:ENST00000676292.1:ENST00000676096.1:ENST00000675365.1:ENST00000674579.1:ENST00000675401.1:ENST00000459735.5:ENST00000476783.5:ENST00000492905.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	54	2	5.06139	5.219860000000001	5.37833	0.00179023	0.00174321	0.0392749	0.0375363
chr7	4708154	4708254	3270174	0	+	0.47	(0.44,0.476]	chr7	303884	249	INTRON	INTRON	FOXK1	ENSG00000164916.11	ENST00000328914.5	protein_coding	protein_coding	protein_coding	protein_coding	1	105	2	4.34514	5.219825	6.09451	3.01924e-5	9.96891e-6	0.00456171	0.00229529
chr1	108935538	108935634	518874	0	-	0.458333	(0.44,0.476]	chr1	60860	2	INTRON	INTRON	CLCC1	ENSG00000121940.17	ENST00000690509.1:ENST00000687328.1:ENST00000685014.1:ENST00000685540.1:ENST00000686576.1:ENST00000688070.1:ENST00000691513.1:ENST00000686821.1:ENST00000692511.1:ENST00000689479.1:ENST00000687646.1:ENST00000687998.1:ENST00000687226.1:ENST00000693336.1:ENST00000689991.1:ENST00000687591.1:ENST00000691777.1:ENST00000690756.1:ENST00000688778.1:ENST00000685104.1:ENST00000689103.1:ENST00000687734.1:ENST00000686434.1:ENST00000685497.1:ENST00000691342.1:ENST00000686776.1:ENST00000692342.1:ENST00000689351.1:ENST00000692584.1:ENST00000692775.1:ENST00000687134.1:ENST00000690707.1:ENST00000687675.1:ENST00000688298.1:ENST00000675018.1:ENST00000690781.1:ENST00000691556.1:ENST00000689189.1:ENST00000687099.1:ENST00000685791.1:ENST00000687865.1:ENST00000687449.1:ENST00000688285.1:ENST00000686817.1:ENST00000369968.7:ENST00000674992.1:ENST00000675001.1:ENST00000369969.7:ENST00000356970.6:ENST00000692184.1:ENST00000482889.2:ENST00000369976.6:ENST00000688610.1:ENST00000675128.1:ENST00000693089.1:ENST00000675571.1:ENST00000675650.1:ENST00000369970.8:ENST00000674561.2:ENST00000675451.1:ENST00000675654.1:ENST00000675790.1:ENST00000675584.1:ENST00000692795.1:ENST00000691731.1:ENST00000689359.1:ENST00000676392.2:ENST00000676391.2:ENST00000676454.1:ENST00000674849.1:ENST00000675956.1:ENST00000302500.5:ENST00000675508.1:ENST00000688168.1:ENST00000693673.1:ENST00000692404.1:ENST00000686078.1:ENST00000690874.1:ENST00000686961.1:ENST00000692732.1:ENST00000685628.1:ENST00000676306.1:ENST00000348264.6:ENST00000675247.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	51	2	5.18481	5.218299999999999	5.25179	0.00124521	6.21872e-4	0.0322969	0.0223951
chr19	50797686	50797760	7203115	0	-	0.459459	(0.44,0.476]	chr19	730896	1	EXON_LNCRNA	EXON_LNCRNA	C19orf48	ENSG00000167747.16	ENST00000641834.2:ENST00000596287.6:ENST00000597705.6:ENST00000693315.1:ENST00000597493.6:ENST00000692421.1:ENST00000598463.5	transcribed_unitary_pseudogene	processed_transcript	transcribed_unitary_pseudogene	processed_transcript	0	53	2	4.85817	5.21736	5.57655	0.00223254	3.3967e-4	0.0435144	0.0170719
chr18	13049991	13050091	6877175	0	+	0.29	(0.28,0.32]	chr18	681435	1	SS5_PROX	SS5_PROX:INTRON	CEP192	ENSG00000101639.19	ENST00000325971.12:ENST00000506447.5:ENST00000589596.5:ENST00000513432.5:ENST00000511820.6:ENST00000510237.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	55	2	5.08622	5.216934999999999	5.34765	0.00287138	0.00227525	0.0474836	0.0437013
chr1	229534379	229534477	653522	0	-	0.418367	(0.408,0.44]	chr1	77456	23	INTRON	INTRON	ABCB10	ENSG00000135776.5	ENST00000344517.5	protein_coding	protein_coding	protein_coding	protein_coding	0	51	2	5.18536	5.215185	5.24501	0.00137378	6.17381e-4	0.0336718	0.0223951
chr19	53077912	53078010	7210307	0	-	0.438776	(0.408,0.44]	chr19	731876	1	INTRON	INTRON	ZNF160	ENSG00000170949.18	ENST00000599056.5:ENST00000418871.5:ENST00000429604.5:ENST00000683776.1:ENST00000599247.5:ENST00000601982.5:ENST00000355147.9:ENST00000599729.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	51	2	5.18536	5.215185	5.24501	0.00137378	6.17381e-4	0.0336718	0.0223951
chr3	48976159	48976257	1422053	0	+	0.438776	(0.408,0.44]	chr3	149556	8	INTRON	INTRON	ARIH2	ENSG00000177479.20	ENST00000449376.5:ENST00000490095.5:ENST00000356401.9:ENST00000452385.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	51	2	5.18536	5.215185	5.24501	0.00137378	6.17381e-4	0.0336718	0.0223951
chr7	140872697	140872797	3663213	0	-	0.42	(0.408,0.44]	chr7	340105	221	INTRON	INTRON	BRAF	ENSG00000157764.14	ENST00000496384.7:ENST00000644969.2:ENST00000646891.1:ENST00000644905.1:ENST00000642228.1:ENST00000288602.11:ENST00000646730.1:ENST00000497784.2:ENST00000642272.1:ENST00000642808.1:ENST00000643790.1:ENST00000469930.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	51	2	5.18536	5.215185	5.24501	0.00137378	6.17381e-4	0.0336718	0.0223951
chr7	101943009	101943109	3367623	0	+	0.37	(0.35,0.378]	chr7	315229	100	INTRON	INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000497815.5:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000558469.5:ENST00000560541.5:ENST00000558836.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	54	2	4.89523	5.214969999999999	5.53471	0.00253947	6.96925e-4	0.0465056	0.024224
chr16	31183252	31183350	6340585	0	+	0.27551	[0,0.28]	chr16	608323	7	EXON_MRNA	EXON_MRNA:INTRON	FUS	ENSG00000089280.19	ENST00000566605.5:ENST00000254108.12:ENST00000380244.7:ENST00000487045.6:ENST00000487509.6:ENST00000568685.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	143	2	4.05211	5.214905	6.3777	2.98802e-4	1.8994e-5	0.0160416	0.00333235
chr19	4996287	4996387	7003688	0	+	0.45	(0.44,0.476]	chr19	694800	267	INTRON	INTRON	KDM4B	ENSG00000127663.15	ENST00000159111.9:ENST00000611640.4:ENST00000588337.5:ENST00000381759.8	protein_coding	protein_coding	protein_coding	protein_coding	0	51	2	5.02703	5.214275	5.40152	0.00278015	2.39829e-4	0.0469265	0.0136403
chr19	47171612	47171712	7084291	0	+	0.39	(0.378,0.408]	chr19	708798	13	INTRON	INTRON	SAE1	ENSG00000142230.13	ENST00000413379.7:ENST00000270225.12:ENST00000598840.5:ENST00000414294.6:ENST00000660039.1:ENST00000664120.1:ENST00000596995.1:ENST00000392776.3:ENST00000659110.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	52	2	5.05091	5.21415	5.37739	0.00118558	0.0010014	0.031662	0.0288906
chr16	31183350	31183357	6340586	0	+	0	[0,0.28]	chr16	608324	1	INTRON	INTRON	FUS	ENSG00000089280.19	ENST00000566605.5:ENST00000254108.12:ENST00000380244.7:ENST00000487509.6:ENST00000568685.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	57	2	5.03568	5.2139500000000005	5.39222	0.00453865	0.00446141	0.0610799	0.0595107
chr2	171954097	171954196	918678	0	+	0.30303	(0.28,0.32]	chr2	101196	7	INTRON	INTRON	HAT1	ENSG00000128708.13	ENST00000412731.5:ENST00000264108.5:ENST00000457761.6:ENST00000494601.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	120	2	4.00726	5.2131	6.41894	1.18967e-4	4.40085e-5	0.00932482	0.00569607
chr17	81609709	81609809	6849328	0	-	0.46	(0.44,0.476]	chr17	678210	1	SS5_PROX	SS5_PROX:INTRON	NPLOC4	ENSG00000182446.14	ENST00000331134.11:ENST00000374747.9:ENST00000574897.5:ENST00000570324.1:ENST00000574344.5:ENST00000625705.1:ENST00000570300.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	139	2	3.94935	5.212095	6.47484	3.88959e-6	3.65694e-6	0.00142343	0.00124794
chr6	34371266	34371366	3084560	0	-	0.52	(0.515,0.57]	chr6	288633	289	INTRON	INTRON	NUDT3:RPS10-NUDT3	ENSG00000272325.2:ENSG00000270800.3	ENST00000607016.2:ENST00000639725.1:ENST00000639877.1:ENST00000605528.2	protein_coding	protein_coding	protein_coding	protein_coding	1	96	2	4.13835	5.211625	6.2849	2.53131e-5	2.79922e-6	0.00394111	0.00118618
chr2	152720004	152720092	894262	0	+	0.375	(0.35,0.378]	chr2	99113	1	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ARL6IP6	ENSG00000177917.12	ENST00000690727.1:ENST00000685752.1:ENST00000688293.1:ENST00000686839.1:ENST00000689155.1:ENST00000690703.1:ENST00000691702.1:ENST00000691523.1:ENST00000688012.1:ENST00000687504.1:ENST00000455875.6:ENST00000692124.1:ENST00000693573.1:ENST00000686951.1:ENST00000692399.1:ENST00000425034.6:ENST00000686080.1:ENST00000326446.10:ENST00000688171.1:ENST00000463690.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	52	2	5.15723	5.2098700000000004	5.26251	0.00272706	6.20882e-4	0.0467523	0.0223951
chr15	34177620	34177720	6131070	0	-	0.31	(0.28,0.32]	chr15	583936	4	SS5_PROX	SS5_PROX:INTRON	KATNBL1	ENSG00000134152.11	ENST00000256544.8:ENST00000560247.5:ENST00000540594.5:ENST00000560671.5:ENST00000557877.5:ENST00000559462.1:ENST00000560108.5:ENST00000559515.1:ENST00000559464.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	55	2	5.02666	5.209505	5.39235	0.0027935	0.0024844	0.0488769	0.0446195
chr11	483565	483664	4719240	0	+	0.343434	(0.32,0.35]	chr11	436026	31	INTRON	INTRON	PTDSS2	ENSG00000174915.12	ENST00000532614.5:ENST00000308020.6:ENST00000531520.5:ENST00000526878.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	53	2	5.13123	5.208765	5.2863	0.00394704	7.56575e-4	0.0548259	0.0251966
chr9	33837071	33837171	4110424	0	+	0.33	(0.32,0.35]	chr9	374686	61	INTRON	INTRON	UBE2R2	ENSG00000107341.5	ENST00000263228.4	protein_coding	protein_coding	protein_coding	protein_coding	0	53	2	5.13123	5.208765	5.2863	0.00394704	7.56575e-4	0.0548259	0.0251966
chr12	112076488	112076588	5415096	0	-	0.34	(0.32,0.35]	chr12	517213	3	INTRON	INTRON	NAA25	ENSG00000111300.10	ENST00000261745.9:ENST00000552527.5:ENST00000549711.5:ENST00000551858.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	55	2	4.76501	5.208615	5.65222	0.0114287	1.55757e-4	0.0886611	0.0106835
chr7	44983509	44983607	3528785	0	-	0.459184	(0.44,0.476]	chr7	329133	6	EXON_LNCRNA	EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SNHG15	ENSG00000232956.10	ENST00000578968.6:ENST00000668580.1:ENST00000582727.3:ENST00000585030.6:ENST00000577700.5:ENST00000667823.2:ENST00000579383.6:ENST00000580458.5:ENST00000580528.2:ENST00000667119.1:ENST00000438705.3:ENST00000653305.1:ENST00000584327.5	lncRNA	lncRNA	lncRNA	lncRNA	0	51	2	4.96491	5.20794	5.45097	0.0034249	1.90652e-4	0.0517761	0.0120089
chr1	211270831	211270931	305811	0	+	0.42	(0.408,0.44]	chr1	35245	2	SS3_PROX	SS3_PROX:INTRON	RCOR3	ENSG00000117625.14	ENST00000534478.5:ENST00000533469.5:ENST00000367006.8:ENST00000419091.7:ENST00000452621.6:ENST00000528926.5:ENST00000528408.5:ENST00000529572.5:ENST00000367005.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	52	2	4.8253	5.207875	5.59045	0.0056738	9.6776e-5	0.0653997	0.00826486
chr3	43533020	43533120	1674544	0	-	0.41	(0.408,0.44]	chr3	170972	999	INTRON	INTRON	ANO10	ENSG00000160746.13	ENST00000292246.8:ENST00000350459.8:ENST00000396091.7:ENST00000414522.6:ENST00000451430.6:ENST00000448045.1	protein_coding	protein_coding	protein_coding	protein_coding	0	52	2	4.8253	5.207875	5.59045	0.0056738	9.6776e-5	0.0653997	0.00826486
chr20	38949476	38949573	7272656	0	+	0.43299	(0.408,0.44]	chr20	739066	11	INTRON	INTRON	FAM83D	ENSG00000101447.15	ENST00000619304.4:ENST00000619850.2	protein_coding	protein_coding	protein_coding	protein_coding	0	52	2	4.93024	5.2072	5.48416	0.00170369	5.43528e-4	0.0381936	0.0215026
chr13	108217472	108217572	5649041	0	-	0.52	(0.515,0.57]	chr13	538185	21	UTR5	UTR5:EXON_MRNA:INTRON	LIG4	ENSG00000174405.15	ENST00000405925.2:ENST00000688455.1:ENST00000692222.1:ENST00000688396.1:ENST00000688595.1:ENST00000686204.1	protein_coding	protein_coding	protein_coding	protein_coding	0	48	2	5.19208	5.206745	5.22141	6.44141e-4	3.4344e-4	0.0231685	0.0164987
chr1	63411238	63411331	132911	0	+	0.344086	(0.32,0.35]	chr1	15078	2	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SS5_ADJ:SS3_PROX:SS5_PROX:INTRON	ALG6	ENSG00000088035.18	ENST00000647818.1:ENST00000603108.6:ENST00000648964.1:ENST00000263440.6:ENST00000650494.1:ENST00000649570.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	53	2	5.17822	5.206709999999999	5.2352	0.0028268	0.00115625	0.0472361	0.0313436
chr18	36056704	36056803	6963438	0	-	0.333333	(0.32,0.35]	chr18	689080	34	INTRON	INTRON	RPRD1A	ENSG00000141425.18	ENST00000399022.9:ENST00000590898.5:ENST00000357384.8:ENST00000588737.5:ENST00000589050.1:ENST00000592674.1:ENST00000588459.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:nonsense_mediated_decay:processed_transcript	0	53	2	5.17822	5.206709999999999	5.2352	0.0028268	0.00115625	0.0472361	0.0313436
chr7	107553685	107553784	3612928	0	-	0.242424	[0,0.28]	chr7	336716	46	INTRON	INTRON	COG5	ENSG00000164597.15	ENST00000297135.9:ENST00000347053.8:ENST00000393603.7:ENST00000605888.1	protein_coding	protein_coding	protein_coding	protein_coding	0	56	2	5.1613	5.20654	5.25178	0.00866441	0.0022031	0.0787025	0.0435144
chr7	87859051	87859151	3566205	0	-	0.21	[0,0.28]	chr7	332331	3	SS3_PROX	SS3_PROX:INTRON	SLC25A40	ENSG00000075303.13	ENST00000341119.10:ENST00000429674.5:ENST00000444363.5:ENST00000491499.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	57	2	4.88625	5.20572	5.52519	0.0173315	8.21427e-4	0.104099	0.0261674
chr2	55387277	55387377	1124065	0	-	0.27	[0,0.28]	chr2	120560	120	INTRON	INTRON	CCDC88A	ENSG00000115355.18	ENST00000263630.13:ENST00000436346.7:ENST00000336838.10:ENST00000642200.1:ENST00000413716.7:ENST00000643413.1:ENST00000647401.1:ENST00000645311.1:ENST00000646796.1:ENST00000645571.1:ENST00000645477.1:ENST00000645072.1:ENST00000644890.1:ENST00000644630.1:ENST00000647098.1:ENST00000646324.1:ENST00000642890.1:ENST00000647517.1:ENST00000645031.1:ENST00000645484.1:ENST00000645529.1:ENST00000644033.1:ENST00000644193.1:ENST00000645168.1:ENST00000647341.1:ENST00000430086.1:ENST00000644127.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	56	2	5.11033	5.205715	5.3011	0.00991388	0.00185843	0.0838372	0.039946
chr3	50017111	50017211	1423731	0	+	0.27	[0,0.28]	chr3	149994	172	INTRON	INTRON	RBM6	ENSG00000004534.15	ENST00000442092.5:ENST00000443081.5:ENST00000419610.5:ENST00000441115.5:ENST00000422955.5:ENST00000454079.5:ENST00000266022.9:ENST00000425608.5:ENST00000434592.5:ENST00000464013.5:ENST00000483350.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	56	2	5.11033	5.205715	5.3011	0.00991388	0.00185843	0.0838372	0.039946
chr6	35872828	35872928	3088332	0	-	0.25	[0,0.28]	chr6	288853	1	SS3_PROX	SS3_PROX:INTRON	SRPK1	ENSG00000096063.16	ENST00000373825.7:ENST00000423325.6:ENST00000346162.10:ENST00000361690.7:ENST00000510290.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	56	2	5.20071	5.2056249999999995	5.21054	0.00758653	0.00261806	0.0749063	0.0470772
chr11	68499054	68499154	4817716	0	+	0.23	[0,0.28]	chr11	448907	379	INTRON	INTRON	PPP6R3	ENSG00000110075.15	ENST00000530427.5:ENST00000528635.5:ENST00000529907.5:ENST00000533127.5:ENST00000534534.5:ENST00000529344.5:ENST00000524845.5:ENST00000393800.7:ENST00000265637.8:ENST00000524904.5:ENST00000393801.7:ENST00000265636.9:ENST00000529710.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	60	2	4.62084	5.20538	5.78992	0.0313633	2.85302e-4	0.13151	0.0150568
chr13	77265677	77265774	5624364	0	-	0.381443	(0.378,0.408]	chr13	536457	17	EXON_LNCRNA	EXON_LNCRNA:INTRON	MYCBP2	ENSG00000005810.20	ENST00000683823.1:ENST00000684354.1:ENST00000682321.1:ENST00000695079.1:ENST00000683697.1:ENST00000357337.11:ENST00000544440.7:ENST00000695080.1:ENST00000695081.1:ENST00000695090.1:ENST00000695091.1:ENST00000695094.1:ENST00000695095.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	52	2	4.87762	5.205305	5.53299	0.00553849	1.47095e-4	0.0648867	0.0105341
chr10	73096265	73096365	4647841	0	-	0.63	(0.57,1]	chr10	427558	1	SS5_PROX	SS5_PROX:INTRON	P4HA1	ENSG00000122884.13	ENST00000394890.7:ENST00000307116.6:ENST00000373008.6:ENST00000440381.5:ENST00000263556.3	protein_coding	protein_coding	protein_coding	protein_coding	4	123	2	3.48818	5.203365	6.91855	7.21041e-7	1.83041e-10	4.73996e-4	1.6615e-6
chr1	10307531	10307628	21656	0	+	0.525773	(0.515,0.57]	chr1	2188	9	UTR3	UTR3:EXON_MRNA:INTRON	KIF1B	ENSG00000054523.20	ENST00000676179.1:ENST00000377093.9:ENST00000696500.1:ENST00000263934.10:ENST00000696502.1:ENST00000696503.1:ENST00000696504.1:ENST00000377086.5:ENST00000377081.5:ENST00000620295.2:ENST00000622724.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	48	2	5.04225	5.2033249999999995	5.3644	0.00131841	1.52226e-4	0.0331539	0.0106137
chr8	38142448	38142547	3735059	0	+	0.393939	(0.378,0.408]	chr8	347033	25	INTRON	INTRON	ASH2L	ENSG00000129691.16	ENST00000521808.5	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	0	51	2	5.17627	5.203189999999999	5.23011	0.00208234	5.72873e-4	0.0411801	0.0217398
chr6	30919102	30919195	2842317	0	+	0.526882	(0.515,0.57]	chr6	267325	3	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	VARS2	ENSG00000137411.19	ENST00000321897.9:ENST00000672801.1:ENST00000625423.2:ENST00000676266.1:ENST00000541562.6:ENST00000469358.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	48	2	5.12974	5.203125	5.27651	5.11033e-4	4.54392e-4	0.020816	0.0192381
chr7	6058465	6058557	3476245	0	-	0.391304	(0.378,0.408]	chr7	325251	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	EIF2AK1	ENSG00000086232.13	ENST00000199389.11:ENST00000431744.5:ENST00000463213.5:ENST00000446699.1:ENST00000461493.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	55	2	4.58427	5.20262	5.82097	0.0128325	3.45471e-5	0.0926667	0.00467863
chr5	160427015	160427114	2529335	0	+	0.282828	(0.28,0.32]	chr5	242019	23	INTRON	INTRON	PTTG1	ENSG00000164611.13	ENST00000352433.10:ENST00000520452.5:ENST00000393964.1:ENST00000519287.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	54	2	5.15358	5.202495	5.25141	0.0052282	0.00125199	0.0633615	0.0328543
chr21	37186274	37186365	7406010	0	+	0.362637	(0.35,0.378]	chr21	754772	1	INTRON	INTRON	TTC3	ENSG00000182670.14	ENST00000492275.6:ENST00000418766.6:ENST00000450533.6:ENST00000696812.1:ENST00000696811.1:ENST00000463216.6:ENST00000411496.2:ENST00000399017.6:ENST00000354749.6:ENST00000479930.5:ENST00000476784.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	55	2	4.64457	5.2024349999999995	5.7603	0.012652	6.3427e-5	0.0926667	0.00658818
chr3	101682204	101682286	1758896	0	-	0.560976	(0.515,0.57]	chr3	178424	3	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	RPL24	ENSG00000114391.13	ENST00000394077.8:ENST00000464595.1:ENST00000495401.5:ENST00000488288.1:ENST00000469605.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	49	2	4.92473	5.20136	5.47799	0.00108255	2.09356e-4	0.0300133	0.0131276
chr19	1598726	1598826	7112589	0	-	0.62	(0.57,1]	chr19	714553	4	SS3_PROX	SS3_PROX:INTRON	ENSG00000267059:UQCR11	ENSG00000267059.2:ENSG00000127540.12	ENST00000585937.1:ENST00000591899.8:ENST00000593029.1:ENST00000589880.1:ENST00000593264.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	41	2	4.7773	5.201105	5.62491	5.07088e-4	6.73465e-6	0.0202328	0.00194394
chr15	66602127	66602227	6050982	0	+	0.49	(0.476,0.515]	chr15	576221	195	INTRON	INTRON	LINC01169	ENSG00000259471.1	ENST00000558797.1	lncRNA	lncRNA	lncRNA	lncRNA	0	51	2	4.90761	5.200975	5.49434	0.00386428	1.62782e-4	0.0542786	0.0109774
chr20	32720415	32720515	7327815	0	-	0.5	(0.476,0.515]	chr20	746205	133	INTRON	INTRON	ENSG00000285382:COMMD7	ENSG00000285382.1:ENSG00000149600.12	ENST00000645058.1:ENST00000642484.1:ENST00000642630.1:ENST00000646357.1:ENST00000278980.11:ENST00000446419.6:ENST00000610160.1:ENST00000474815.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	51	2	4.90761	5.200975	5.49434	0.00386428	1.62782e-4	0.0542786	0.0109774
chr1	31259819	31259903	412907	0	-	0.416667	(0.408,0.44]	chr1	49758	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	SNRNP40	ENSG00000060688.13	ENST00000263694.9:ENST00000486941.1:ENST00000489853.1:ENST00000373720.3:ENST00000491106.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	366	2	4.24576	5.20097	6.15618	1.58063e-7	8.55438e-12	1.94719e-4	2.58826e-7
chrX	121227023	121227123	7715460	0	+	0.38	(0.378,0.408]	chrX	789390	408	INTRON	INTRON	ENSG00000286163	ENSG00000286163.1	ENST00000651788.1	lncRNA	lncRNA	lncRNA	lncRNA	0	53	2	4.73839	5.200945	5.6635	0.00837252	7.77533e-5	0.0774402	0.00735438
chr7	131092473	131092573	3642524	0	-	0.36	(0.35,0.378]	chr7	338763	41	INTRON	INTRON	LINC-PINT	ENSG00000231721.7	ENST00000647388.1:ENST00000423414.5:ENST00000433079.5:ENST00000642156.1:ENST00000646429.1:ENST00000451786.5:ENST00000645248.1:ENST00000642602.1:ENST00000644804.1:ENST00000647288.1:ENST00000643135.1:ENST00000643855.1:ENST00000643874.1:ENST00000644188.1:ENST00000431189.1:ENST00000642483.1:ENST00000429901.2	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	0	52	2	4.98561	5.20088	5.41615	0.00474226	3.21724e-4	0.0600445	0.0159645
chr5	54029808	54029908	2618102	0	-	0.52	(0.515,0.57]	chr5	248835	1178	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	95	2	4.17103	5.20058	6.23013	2.07632e-5	3.89558e-6	0.00353137	0.00142343
chr20	52188939	52189037	7357537	0	-	0.377551	(0.35,0.378]	chr20	750248	15	INTRON	INTRON	ZFP64	ENSG00000020256.20	ENST00000371518.6:ENST00000361387.6:ENST00000216923.5:ENST00000371515.8:ENST00000346617.8:ENST00000461898.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	52	2	5.09052	5.20055	5.31058	0.00160599	0.00123501	0.0364977	0.0326215
chr17	9530303	9530403	6724871	0	-	0.33	(0.32,0.35]	chr17	659731	248	INTRON	INTRON	STX8	ENSG00000170310.15	ENST00000306357.9:ENST00000575858.5:ENST00000574431.5:ENST00000575294.6:ENST00000573016.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	54	2	4.93425	5.200335	5.46642	0.00281048	0.00127669	0.0488779	0.0326395
chr20	384279	384375	7219031	0	+	0.3125	(0.28,0.32]	chr20	733506	13	INTRON	INTRON	TRIB3	ENSG00000101255.12	ENST00000615226.4:ENST00000217233.9:ENST00000449710.5:ENST00000422053.3	protein_coding	protein_coding	protein_coding	protein_coding	0	54	2	5.04579	5.198840000000001	5.35189	0.00714672	8.52844e-4	0.0723634	0.0264928
chrX	124030360	124030460	7717445	0	+	0.3	(0.28,0.32]	chrX	789500	33	INTRON	INTRON	STAG2	ENSG00000101972.20	ENST00000394477.5:ENST00000218089.13:ENST00000455404.5:ENST00000483575.5:ENST00000687810.1:ENST00000687071.1:ENST00000469481.1:ENST00000371160.5:ENST00000435103.5:ENST00000687852.1:ENST00000371145.8:ENST00000692982.1:ENST00000371157.7:ENST00000691035.1:ENST00000686802.1:ENST00000691383.1:ENST00000686127.1:ENST00000371144.7:ENST00000458176.5:ENST00000466748.5:ENST00000471107.1:ENST00000428941.5:ENST00000435215.5:ENST00000394478.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	54	2	5.04579	5.198840000000001	5.35189	0.00714672	8.52844e-4	0.0723634	0.0264928
chr4	2567525	2567625	1912825	0	+	0.25	[0,0.28]	chr4	191976	300	INTRON	INTRON	RNF4:FAM193A	ENSG00000063978.16:ENSG00000125386.16	ENST00000508235.1:ENST00000637812.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	56	2	5.00263	5.19879	5.39495	0.013055	0.00133175	0.093385	0.0335129
chr9	137638024	137638124	4223663	0	+	0.28	[0,0.28]	chr9	388157	4	SS5_PROX	SS5_PROX:INTRON	EHMT1	ENSG00000181090.21	ENST00000462484.5:ENST00000371394.6:ENST00000630754.2:ENST00000460843.6:ENST00000626216.2:ENST00000637593.1:ENST00000629335.2:ENST00000637335.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	56	2	5.09281	5.198525	5.30424	0.00584781	0.00372534	0.0667594	0.0561984
chrX	44920384	44920484	7649074	0	+	0.31	(0.28,0.32]	chrX	782726	460	INTRON	INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000675440.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000621147.5:ENST00000475233.1:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	57	2	4.66359	5.19852	5.73345	0.0193496	1.71668e-4	0.108861	0.0113605
chr21	44032472	44032572	7415234	0	+	0.51	(0.476,0.515]	chr21	755788	3	SS5_PROX	SS5_PROX:INTRON	TRAPPC10	ENSG00000160218.13	ENST00000291574.9:ENST00000380221.7:ENST00000422875.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	52	2	4.85379	5.197945	5.5421	0.00234214	3.56777e-4	0.0442989	0.0175154
chr17	22068337	22068437	6743414	0	-	0.47	(0.44,0.476]	chr17	662110	58	INTRON	INTRON	NCOR1P2	ENSG00000265019.1	ENST00000584728.1	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	0	52	2	4.76068	5.19703	5.63338	0.00653414	7.86121e-5	0.0699952	0.00738014
chr21	10453541	10453633	7368532	0	+	0.326087	(0.32,0.35]	chr21	751979	12	INTRON	INTRON	BAGE2	ENSG00000187172.15	ENST00000470054.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	53	2	5.06139	5.196785	5.33218	0.00204346	0.00179023	0.04086	0.0392749
chr16	58577919	58578012	6495848	0	-	0.311828	(0.28,0.32]	chr16	628576	10	INTRON	INTRON	CNOT1	ENSG00000125107.19	ENST00000317147.10:ENST00000569240.5:ENST00000567188.5:ENST00000441024.6:ENST00000565605.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	56	2	4.73474	5.195845	5.65695	0.0162835	2.41184e-4	0.101453	0.0136674
chr7	107198975	107199073	3378671	0	+	0.265306	[0,0.28]	chr7	316368	20	INTRON	INTRON	HBP1	ENSG00000105856.14	ENST00000468410.5:ENST00000222574.9:ENST00000485846.5:ENST00000463202.5:ENST00000461963.1:ENST00000607681.1:ENST00000463790.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	57	2	4.82433	5.19522	5.56611	0.0200334	7.02173e-4	0.109608	0.0241881
chr21	44862525	44862623	7469012	0	-	0.510204	(0.476,0.515]	chr21	761242	7	INTRON	INTRON	PTTG1IP	ENSG00000183255.12	ENST00000397887.7:ENST00000445724.3:ENST00000330938.8:ENST00000474737.5:ENST00000494690.5:ENST00000480234.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	209	2	3.31328	5.1951599999999996	7.07704	3.18128e-6	7.89762e-8	0.00115633	1.20268e-4
chr13	111282540	111282638	5546008	0	+	0.510204	(0.476,0.515]	chr13	529867	15	INTRON	INTRON	ARHGEF7	ENSG00000102606.19	ENST00000317133.9:ENST00000375739.6:ENST00000375741.6:ENST00000646102.2:ENST00000469877.5:ENST00000466143.5:ENST00000218789.9:ENST00000375736.8:ENST00000426073.6:ENST00000375723.5:ENST00000478679.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	50	2	5.15143	5.19456	5.23769	0.00166579	5.17244e-4	0.0369207	0.0203753
chr19	5709343	5709439	7124601	0	-	0.5	(0.476,0.515]	chr19	717144	5	INTRON	INTRON	LONP1	ENSG00000196365.12	ENST00000360614.8:ENST00000587552.5:ENST00000540670.6:ENST00000593119.5:ENST00000585374.5:ENST00000590558.5:ENST00000590729.5:ENST00000587365.1:ENST00000586617.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	50	2	5.15143	5.19456	5.23769	0.00166579	5.17244e-4	0.0369207	0.0203753
chr19	13835547	13835647	7143275	0	-	0.5	(0.476,0.515]	chr19	721118	118	EXON_LNCRNA	EXON_LNCRNA	MIR23AHG	ENSG00000267519.6	ENST00000587762.2	lncRNA	lncRNA	lncRNA	lncRNA	0	50	2	5.15143	5.19456	5.23769	0.00166579	5.17244e-4	0.0369207	0.0203753
chr4	70824795	70824868	2155665	0	-	0.493151	(0.476,0.515]	chr4	212365	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GRSF1	ENSG00000132463.15	ENST00000254799.11:ENST00000505068.5:ENST00000499044.6:ENST00000502323.5:ENST00000514161.5:ENST00000506453.1:ENST00000508091.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	50	2	5.15143	5.19456	5.23769	0.00166579	5.17244e-4	0.0369207	0.0203753
chr10	1162346	1162446	4380207	0	+	0.43	(0.408,0.44]	chr10	404009	4	SS3_PROX	SS3_PROX:INTRON	LINC00200	ENSG00000229205.5	ENST00000425630.2:ENST00000652683.1:ENST00000655745.1:ENST00000647993.1:ENST00000666348.1	lncRNA	lncRNA	lncRNA	lncRNA	1	111	2	3.90547	5.1943850000000005	6.4833	2.03612e-4	5.48396e-7	0.0129859	3.98367e-4
chr1	246423901	246424001	679888	0	-	0.29	(0.28,0.32]	chr1	79777	66	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000490107.6:ENST00000462422.5:ENST00000403792.7:ENST00000470863.1:ENST00000455277.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	54	2	4.98872	5.19417	5.39962	0.00838468	7.06751e-4	0.0774402	0.0241881
chr7	130191624	130191723	3638614	0	-	0.30303	(0.28,0.32]	chr7	338389	59	INTRON	INTRON	TMEM209	ENSG00000146842.17	ENST00000397622.7:ENST00000473456.5:ENST00000462753.5	protein_coding	protein_coding	protein_coding	protein_coding	0	54	2	4.98872	5.19417	5.39962	0.00838468	7.06751e-4	0.0774402	0.0241881
chr2	197814220	197814320	969198	0	+	0.37	(0.35,0.378]	chr2	104858	35	INTRON	INTRON	PLCL1	ENSG00000115896.16	ENST00000428675.6:ENST00000435320.1:ENST00000487695.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	53	2	4.89523	5.193905	5.49258	0.00253947	8.19894e-4	0.0465056	0.0264086
chr6	110809166	110809265	3190395	0	-	0.494949	(0.476,0.515]	chr6	297127	349	INTRON	INTRON	CDK19	ENSG00000155111.15	ENST00000323817.7:ENST00000368911.8:ENST00000413605.6:ENST00000457688.5:ENST00000460913.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	50	2	5.09423	5.1935199999999995	5.29281	0.00204588	4.07635e-4	0.04086	0.0181306
chr3	48077079	48077179	1687382	0	-	0.48	(0.476,0.515]	chr3	172280	608	INTRON	INTRON	MAP4	ENSG00000047849.22	ENST00000395734.7:ENST00000426837.6:ENST00000360240.10:ENST00000423088.5:ENST00000439356.2:ENST00000468075.2	protein_coding	protein_coding	protein_coding	protein_coding	0	50	2	5.18039	5.19342	5.20645	0.00136049	6.58744e-4	0.0336321	0.0232396
chr6	156970339	156970439	3009094	0	+	0.36	(0.35,0.378]	chr6	281124	266	INTRON	INTRON	ARID1B	ENSG00000049618.24	ENST00000346085.10:ENST00000636930.2:ENST00000647938.1:ENST00000350026.10:ENST00000674298.1:ENST00000674190.1:ENST00000414678.7:ENST00000638000.1:ENST00000319584.11:ENST00000452544.2:ENST00000637887.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	52	2	5.02832	5.1933	5.35828	0.00156444	0.00135282	0.0365263	0.0336321
chr1	64897339	64897439	473853	0	-	0.5	(0.476,0.515]	chr1	57202	106	INTRON	INTRON	JAK1	ENSG00000162434.13	ENST00000342505.5:ENST00000672247.1:ENST00000673046.1:ENST00000672434.1:ENST00000671746.1:ENST00000673254.1:ENST00000673314.1:ENST00000671954.1:ENST00000672179.1:ENST00000673220.1:ENST00000671929.1:ENST00000673502.1:ENST00000672751.1:ENST00000672099.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	103	2	4.17194	5.192915	6.21389	2.87271e-5	1.41639e-5	0.00424646	0.00299745
chr19	58388537	58388594	7107593	0	+	0.350877	(0.35,0.378]	chr19	713445	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	RPS5	ENSG00000083845.9	ENST00000601521.5:ENST00000596314.5:ENST00000598098.5:ENST00000196551.8:ENST00000598495.5:ENST00000599909.1:ENST00000598807.1:ENST00000596046.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	57	2	4.58537	5.19242	5.79947	0.00703328	2.36402e-4	0.0754576	0.0140941
chr9	124662007	124662107	4348122	0	-	0.28	[0,0.28]	chr9	399255	663	INTRON	INTRON	NR6A1	ENSG00000148200.17	ENST00000487099.7:ENST00000373584.7:ENST00000416460.6:ENST00000344523.8	protein_coding	protein_coding	protein_coding	protein_coding	0	56	2	5.03568	5.19229	5.3489	0.00514751	0.00446141	0.062965	0.0610799
chr15	67095490	67095589	6052145	0	+	0.444444	(0.44,0.476]	chr15	576260	171	INTRON	INTRON	SMAD3	ENSG00000166949.17	ENST00000559460.5:ENST00000327367.9:ENST00000679624.1:ENST00000559937.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	50	2	5.08659	5.19191	5.29723	0.00226401	3.83422e-4	0.0425438	0.017699199999999998
chr1	86895887	86895987	498929	0	-	0.46	(0.44,0.476]	chr1	59196	83	INTRON	INTRON	SELENOF	ENSG00000183291.18	ENST00000331835.10:ENST00000370554.5:ENST00000648872.1:ENST00000469566.5:ENST00000401030.4:ENST00000497861.5:ENST00000467557.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	50	2	5.18481	5.1918050000000004	5.1988	0.00151532	6.21872e-4	0.0352794	0.0223951
chr7	102132673	102132773	3369529	0	+	0.46	(0.44,0.476]	chr7	315274	70	INTRON	INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000560541.5:ENST00000558836.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	50	2	5.18481	5.1918050000000004	5.1988	0.00151532	6.21872e-4	0.0352794	0.0223951
chr11	592258	592358	4719733	0	+	0.58	(0.57,1]	chr11	436183	3	SS3_PROX	SS3_PROX:INTRON	PHRF1	ENSG00000070047.13	ENST00000264555.10:ENST00000416188.3:ENST00000534320.5:ENST00000413872.6:ENST00000533464.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	90	2	4.06304	5.190580000000001	6.31812	4.54556e-7	4.10026e-8	3.5553e-4	7.91408e-5
chr11	33157303	33157402	4940938	0	-	0.393939	(0.378,0.408]	chr11	462884	1	INTRON	INTRON	CSTF3	ENSG00000176102.13	ENST00000323959.9:ENST00000524827.6:ENST00000526480.1:ENST00000438862.6:ENST00000431742.2:ENST00000524556.1:ENST00000524775.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	51	2	5.05091	5.190295	5.32968	0.00119786	0.00118558	0.031662	0.0315806
chr3	10142287	10142373	1363116	0	+	0.453488	(0.44,0.476]	chr3	143664	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	VHL	ENSG00000134086.9	ENST00000696153.1:ENST00000256474.3:ENST00000696142.1:ENST00000345392.2:ENST00000696143.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	103	2	4.34514	5.190215	6.03529	4.06961e-5	9.96891e-6	0.00539487	0.00229529
chr4	3079171	3079271	1917102	0	+	0.41	(0.408,0.44]	chr4	192501	37	INTRON	INTRON	HTT	ENSG00000197386.14	ENST00000680956.1:ENST00000680360.1:ENST00000681528.1:ENST00000680239.1:ENST00000649900.1:ENST00000355072.11:ENST00000680291.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	50	2	5.13702	5.189845	5.24267	0.00202889	4.83767e-4	0.04086	0.0199261
chr6	31650313	31650407	3079005	0	-	0.425532	(0.408,0.44]	chr6	286870	3	INTRON	INTRON	BAG6	ENSG00000204463.14	ENST00000211379.9:ENST00000679119.1:ENST00000375964.11:ENST00000676571.1:ENST00000676615.2:ENST00000375976.8:ENST00000362049.10:ENST00000439687.6:ENST00000437771.5:ENST00000435080.5:ENST00000456622.5:ENST00000452994.5:ENST00000434444.5:ENST00000428326.5:ENST00000451898.5:ENST00000433828.5:ENST00000424480.5:ENST00000424176.5:ENST00000441054.5:ENST00000456286.5:ENST00000454165.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	50	2	5.13702	5.189845	5.24267	0.00202889	4.83767e-4	0.04086	0.0199261
chr17	46131832	46131932	6784254	0	-	0.52	(0.515,0.57]	chr17	669216	106	INTRON	INTRON	KANSL1	ENSG00000120071.15	ENST00000574590.6:ENST00000572904.6:ENST00000432791.7:ENST00000575318.6:ENST00000638275.1:ENST00000262419.10:ENST00000648792.1:ENST00000639531.1:ENST00000639150.1:ENST00000639853.1:ENST00000571698.2:ENST00000639375.1:ENST00000638269.1:ENST00000576248.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	48	2	4.90912	5.188965	5.46881	0.0021669	9.03271e-5	0.0417866	0.00795396
chr10	5689046	5689145	4384383	0	+	0.323232	(0.32,0.35]	chr10	404456	35	INTRON	INTRON	TASOR2	ENSG00000108021.21	ENST00000695832.1:ENST00000328090.9:ENST00000695737.1:ENST00000695833.1:ENST00000695834.1:ENST00000695835.1:ENST00000695836.1:ENST00000473789.5:ENST00000477043.5:ENST00000496681.5:ENST00000480839.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	53	2	4.99922	5.188775	5.37833	0.00223907	0.00174321	0.0435144	0.0375363
chr7	101834566	101834666	3366534	0	+	0.44	(0.408,0.44]	chr7	315215	152	INTRON	INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000497815.5:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000607092.1:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000558469.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	50	2	5.18536	5.18869	5.19202	0.0016671	6.17381e-4	0.0369207	0.0223951
chr9	37275769	37275869	4119215	0	+	0.42	(0.408,0.44]	chr9	375389	889	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000461038.5:ENST00000488607.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	50	2	5.18536	5.18869	5.19202	0.0016671	6.17381e-4	0.0369207	0.0223951
chr12	22679701	22679800	5095301	0	+	0.454545	(0.44,0.476]	chr12	481274	57	INTRON	INTRON	ETNK1	ENSG00000139163.16	ENST00000671733.1:ENST00000266517.9:ENST00000538218.2:ENST00000673406.1:ENST00000673188.1:ENST00000544191.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	51	2	4.83202	5.18854	5.54506	0.00525002	1.21665e-4	0.0633615	0.00942499
chr19	1439515	1439605	6995408	0	+	0.5	(0.476,0.515]	chr19	693237	8	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	RPS15	ENSG00000115268.10	ENST00000233609.8:ENST00000586686.6:ENST00000592588.7:ENST00000591032.1:ENST00000592623.5:ENST00000589656.6:ENST00000586656.5:ENST00000591804.6:ENST00000593052.5:ENST00000592700.2:ENST00000586096.3:ENST00000585665.2:ENST00000617694.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	114	2	3.53895	5.18779	6.83663	0.00075485700000000005	3.74514e-7	0.0251966	3.40851e-4
chr1	45654929	45655009	440266	0	-	0.2625	[0,0.28]	chr1	53344	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GPBP1L1	ENSG00000159592.11	ENST00000290795.7:ENST00000355105.8:ENST00000498128.1:ENST00000496278.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	58	2	4.69191	5.18713	5.68235	0.0269474	4.43841e-4	0.123442	0.0190552
chr7	22855649	22855742	3288697	0	+	0.333333	(0.32,0.35]	chr7	305426	3	INTRON	INTRON	SNHG26	ENSG00000228649.10	ENST00000415611.8:ENST00000667557.1:ENST00000422542.4:ENST00000656301.1:ENST00000661147.1:ENST00000656687.2:ENST00000662021.1:ENST00000691516.1:ENST00000685098.1:ENST00000689892.1:ENST00000663057.1:ENST00000657608.1:ENST00000688000.1:ENST00000690219.1:ENST00000658124.1:ENST00000661582.1:ENST00000671680.1	lncRNA	lncRNA	lncRNA	lncRNA	0	60	2	4.46758	5.186365	5.90515	0.0119306	2.30541e-4	0.0962115	0.013917
chr11	74252015	74252115	4827346	0	+	0.5	(0.476,0.515]	chr11	450517	3	SS5_PROX	SS5_PROX:INTRON	PPME1	ENSG00000214517.10	ENST00000328257.13:ENST00000398427.6:ENST00000543525.3:ENST00000541340.5:ENST00000538501.5:ENST00000539021.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	50	2	4.97253	5.184810000000001	5.39709	0.00311573	2.55871e-4	0.0498063	0.0142249
chr8	143826728	143826828	4084051	0	-	0.51	(0.476,0.515]	chr8	371337	3	SS5_PROX	SS5_PROX:INTRON	PUF60	ENSG00000179950.14	ENST00000526683.6:ENST00000349157.10:ENST00000456095.6:ENST00000313352.11:ENST00000453551.6:ENST00000527197.5:ENST00000526459.5:ENST00000527744.5:ENST00000531951.5:ENST00000529999.5:ENST00000531897.5:ENST00000533162.1:ENST00000532127.5:ENST00000526151.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	50	2	5.05847	5.184525	5.31058	0.00108081	9.15544e-4	0.0300133	0.0278396
chr2	101271569	101271656	1199168	0	-	0.298851	(0.28,0.32]	chr2	128133	5	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	RNF149	ENSG00000163162.9	ENST00000485752.1:ENST00000424632.5	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	1	128	2	3.78535	5.18358	6.58181	6.21154e-4	2.11644e-6	0.0229151	9.04525e-4
chr6	149538388	149538486	3245491	0	-	0.408163	(0.378,0.408]	chr6	301526	23	INTRON	INTRON	PPIL4	ENSG00000131013.4	ENST00000253329.3	protein_coding	protein_coding	protein_coding	protein_coding	0	53	2	4.77105	5.1829350000000005	5.59482	0.00330823	4.23783e-4	0.0527031	0.0189958
chr6	156991135	156991234	3009304	0	+	0.454545	(0.44,0.476]	chr6	281130	56	INTRON	INTRON	ARID1B	ENSG00000049618.24	ENST00000346085.10:ENST00000636930.2:ENST00000647938.1:ENST00000350026.10:ENST00000674298.1:ENST00000674190.1:ENST00000414678.7:ENST00000319584.11:ENST00000452544.2:ENST00000637887.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	50	2	5.06288	5.18289	5.3029	0.00102616	0.00102416	0.0294041	0.029231300000000002
chr5	54329012	54329112	2353911	0	+	0.4	(0.378,0.408]	chr5	227055	57	INTRON	INTRON	LINC01033	ENSG00000249069.8	ENST00000665899.1:ENST00000653566.1:ENST00000655801.1:ENST00000654906.1:ENST00000667636.1:ENST00000665869.1:ENST00000664079.1:ENST00000659703.1:ENST00000662351.1:ENST00000523194.7:ENST00000665795.1:ENST00000667992.1:ENST00000662022.1:ENST00000657771.1:ENST00000517934.1	lncRNA	lncRNA	lncRNA	lncRNA	1	114	2	4.24264	5.182684999999999	6.12273	4.14843e-5	6.41562e-6	0.00546267	0.00178496
chr6	53083616	53083715	2877740	0	+	0.363636	(0.35,0.378]	chr6	273154	6	INTRON	INTRON	FBXO9	ENSG00000112146.17	ENST00000370939.7:ENST00000323557.12:ENST00000244426.10:ENST00000480463.6:ENST00000484812.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	51	2	5.15723	5.18233	5.20743	0.00272706	7.78116e-4	0.0467523	0.0256531
chr2	241683815	241683915	1349409	0	-	0.5	(0.476,0.515]	chr2	141811	5	INTRON	INTRON	DTYMK	ENSG00000168393.13	ENST00000400770.6:ENST00000305784.7:ENST00000445261.5:ENST00000432348.5:ENST00000420144.1:ENST00000493095.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	53	2	4.69918	5.182115	5.66505	0.00400966	2.08835e-4	0.057767	0.0131276
chr11	62645062	62645162	4960358	0	-	0.45	(0.44,0.476]	chr11	466618	46	INTRON	INTRON	GANAB	ENSG00000089597.18	ENST00000346178.8:ENST00000532402.5:ENST00000356638.8:ENST00000540933.5:ENST00000648273.1:ENST00000534779.5:ENST00000534613.5:ENST00000525994.1:ENST00000526210.1:ENST00000526392.1:ENST00000529737.5:ENST00000534419.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	102	2	4.2119	5.181649999999999	6.1514	2.2546e-5	2.22282e-5	0.00386909	0.00367645
chr4	77759541	77759640	2166432	0	-	0.373737	(0.35,0.378]	chr4	213697	22	INTRON	INTRON	CNOT6L	ENSG00000138767.14	ENST00000504123.7:ENST00000649644.1:ENST00000515506.6:ENST00000512485.6:ENST00000504804.7:ENST00000506166.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	51	2	5.04512	5.180339999999999	5.31556	0.00393262	4.97087e-4	0.0548259	0.0201536
chrX	77902949	77903031	7684982	0	+	0.353659	(0.35,0.378]	chrX	786820	3	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	COX7B	ENSG00000131174.7	ENST00000373335.4:ENST00000475465.1:ENST00000650309.2:ENST00000647835.1	protein_coding	protein_coding	protein_coding	protein_coding	0	51	2	5.04512	5.180339999999999	5.31556	0.00393262	4.97087e-4	0.0548259	0.0201536
chr5	75713051	75713151	2644342	0	-	0.37	(0.35,0.378]	chr5	251417	1	SS3_PROX	SS3_PROX:INTRON	POC5	ENSG00000152359.15	ENST00000428202.7:ENST00000514838.6:ENST00000503835.5:ENST00000515285.5:ENST00000502826.5:ENST00000506164.5:ENST00000512125.5:ENST00000508467.5:ENST00000507421.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	53	2	4.71953	5.180095	5.64066	0.0103314	1.14247e-4	0.0850389	0.0091431
chr19	1206723	1206818	6994201	0	+	0.389474	(0.378,0.408]	chr19	692885	11	UTR5	UTR5:EXON_MRNA:INTRON	STK11	ENSG00000118046.17	ENST00000585748.2:ENST00000326873.12:ENST00000652231.1:ENST00000593219.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	306	2	4.99153	5.17958	5.36763	4.53088e-8	1.57405e-9	8.46643e-5	1.07355e-5
chr9	78011519	78011619	4271745	0	-	0.26	[0,0.28]	chr9	392880	888	INTRON	INTRON	GNAQ	ENSG00000156052.11	ENST00000286548.9:ENST00000411677.1	protein_coding	protein_coding	protein_coding	protein_coding	0	55	2	5.05748	5.17929	5.3011	0.0113653	0.00185843	0.0886611	0.039946
chr1	25461784	25461884	48261	0	+	0.23	[0,0.28]	chr1	5949	25	INTRON	INTRON	MACO1	ENSG00000204178.11	ENST00000399766.7:ENST00000374343.5:ENST00000647928.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	55	2	5.14777	5.179155	5.21054	0.00758653	0.00311898	0.0749063	0.0512673
chr1	36295888	36295985	73658	0	+	0.329897	(0.32,0.35]	chr1	9418	16	INTRON	INTRON	THRAP3	ENSG00000054118.15	ENST00000469141.6:ENST00000648638.1:ENST00000354618.10	protein_coding	protein_coding	protein_coding	protein_coding	0	52	2	5.01917	5.17831	5.33745	0.0055659	6.1485e-4	0.0648867	0.0223951
chr19	21406256	21406356	7040914	0	+	0.35	(0.32,0.35]	chr19	702026	4	SS5_PROX	SS5_PROX:INTRON	ZNF493	ENSG00000196268.12	ENST00000596302.5:ENST00000392288.7:ENST00000355504.4:ENST00000594390.5:ENST00000339914.6:ENST00000598152.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	52	2	5.01917	5.17831	5.33745	0.0055659	6.1485e-4	0.0648867	0.0223951
chr6	30304265	30304365	3076766	0	-	0.43	(0.408,0.44]	chr6	286142	36	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	HCG18	ENSG00000231074.10	ENST00000665953.1:ENST00000670397.1:ENST00000659132.1:ENST00000659836.1:ENST00000669374.1:ENST00000653541.1:ENST00000670071.1:ENST00000666294.1:ENST00000657247.1:ENST00000654996.1:ENST00000653301.1:ENST00000657595.1:ENST00000658695.1:ENST00000664861.1:ENST00000668974.1:ENST00000654915.1:ENST00000660593.1:ENST00000687430.1:ENST00000656629.1:ENST00000602550.5:ENST00000687815.1:ENST00000449544.6:ENST00000426882.6:ENST00000438412.6:ENST00000602698.6:ENST00000454129.5:ENST00000444126.5:ENST00000602290.2:ENST00000412685.8:ENST00000602861.6:ENST00000454269.6:ENST00000686575.1:ENST00000687471.1:ENST00000691282.1:ENST00000668243.1:ENST00000413358.6:ENST00000602516.1:ENST00000602498.1	lncRNA	lncRNA	lncRNA	lncRNA	0	53	2	4.7041	5.177300000000001	5.6505	0.00381677	2.70553e-4	0.0562562	0.0150813
chr8	81720986	81721065	3979571	0	-	0.506329	(0.476,0.515]	chr8	364649	4	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	ZFAND1	ENSG00000104231.11	ENST00000220669.10:ENST00000523096.5:ENST00000522520.5:ENST00000519464.5:ENST00000521895.5:ENST00000521287.5:ENST00000523431.5:ENST00000520635.5:ENST00000519523.5:ENST00000517588.5:ENST00000520604.5:ENST00000523361.5:ENST00000521742.5:ENST00000517450.5:ENST00000518419.5:ENST00000520076.5:ENST00000524339.5:ENST00000517353.5:ENST00000519820.5:ENST00000521885.5:ENST00000520941.5:ENST00000523012.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	51	2	4.85379	5.17623	5.49867	0.00234214	4.28561e-4	0.0442989	0.0189958
chr7	43652979	43653077	3525608	0	-	0.367347	(0.35,0.378]	chr7	328755	19	INTRON	INTRON	COA1	ENSG00000106603.20	ENST00000415076.6:ENST00000446330.6:ENST00000446564.5:ENST00000438444.5:ENST00000223336.11:ENST00000310564.10:ENST00000415798.5:ENST00000431651.5:ENST00000451651.5:ENST00000418140.5:ENST00000448704.5:ENST00000470156.1:ENST00000457939.1:ENST00000420441.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	51	2	4.98561	5.17617	5.3667299999999996	0.00474226	3.99274e-4	0.0600445	0.0179401
chr1	90997361	90997461	502281	0	-	0.32	(0.28,0.32]	chr1	59504	146	INTRON	INTRON	ZNF644	ENSG00000122482.22	ENST00000370440.5:ENST00000337393.10:ENST00000347275.9:ENST00000361321.5:ENST00000467231.5:ENST00000498303.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	53	2	5.10069	5.17605	5.25141	0.00610574	0.00125199	0.0676501	0.0328543
chr10	94602610	94602710	4500211	0	+	0.3	(0.28,0.32]	chr10	414337	6	INTRON	INTRON	ENSG00000244332:HELLS	ENSG00000244332.1:ENSG00000119969.15	ENST00000432120.1:ENST00000371327.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	0	53	2	5.10069	5.17605	5.25141	0.00610574	0.00125199	0.0676501	0.0328543
chrX	45012114	45012213	7649996	0	+	0.282828	(0.28,0.32]	chrX	782751	7	INTRON	INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000675440.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000621147.5:ENST00000475233.1:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	53	2	5.10069	5.17605	5.25141	0.00610574	0.00125199	0.0676501	0.0328543
chr1	70217328	70217428	142546	0	+	0.53	(0.515,0.57]	chr1	15965	112	INTRON	INTRON	SRSF11	ENSG00000116754.14	ENST00000370951.5:ENST00000463877.1:ENST00000687381.1:ENST00000370950.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	47	2	5.04225	5.17573	5.30921	0.00131841	1.98811e-4	0.0331539	0.0122787
chr1	155545179	155545279	562720	0	-	0.21	[0,0.28]	chr1	67117	232	INTRON	INTRON	ASH1L	ENSG00000116539.14	ENST00000676814.1:ENST00000392403.8:ENST00000368346.7:ENST00000677213.1:ENST00000678117.1:ENST00000679097.1:ENST00000679333.1:ENST00000679133.1:ENST00000548830.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	55	2	5.00263	5.1757100000000005	5.34879	0.013055	0.00157139	0.093385	0.0365659
chr1	176136747	176136847	591002	0	-	0.28	[0,0.28]	chr1	70943	2	SS3_PROX	SS3_PROX:INTRON	COP1	ENSG00000143207.21	ENST00000367669.8:ENST00000367667.5:ENST00000367666.5:ENST00000649803.1:ENST00000308769.12:ENST00000498306.5:ENST00000491600.5:ENST00000474194.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	55	2	5.00263	5.1757100000000005	5.34879	0.013055	0.00157139	0.093385	0.0365659
chr8	140970882	140970981	4079773	0	-	0.272727	[0,0.28]	chr8	370582	162	INTRON	INTRON	PTK2	ENSG00000169398.20	ENST00000696786.1:ENST00000522684.5:ENST00000395218.3:ENST00000521059.5:ENST00000519993.5:ENST00000340930.7:ENST00000524357.5:ENST00000521791.5:ENST00000523067.5:ENST00000520828.5:ENST00000519881.5:ENST00000520892.5:ENST00000523803.5:ENST00000521907.5:ENST00000517453.5:ENST00000520045.5:ENST00000521332.5:ENST00000524040.5:ENST00000523679.1:ENST00000524257.5:ENST00000523797.1:ENST00000519635.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	55	2	5.00263	5.1757100000000005	5.34879	0.013055	0.00157139	0.093385	0.0365659
chr17	49816775	49816866	6625604	0	+	0.450549	(0.44,0.476]	chr17	646765	5	INTRON	INTRON	KAT7	ENSG00000136504.13	ENST00000675278.1:ENST00000259021.9:ENST00000454930.6:ENST00000509773.5:ENST00000510819.5:ENST00000424009.6:ENST00000435742.2:ENST00000513171.5:ENST00000514540.5:ENST00000513980.5:ENST00000512616.5:ENST00000508594.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	50	2	4.9	5.175485	5.45097	0.00423315	1.90652e-4	0.0572185	0.0120089
chr1	28955249	28955348	59363	0	+	0.262626	[0,0.28]	chr1	7621	401	INTRON	INTRON	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000647918.1:ENST00000646800.1:ENST00000644342.1:ENST00000646189.1:ENST00000482464.6:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000646260.1:ENST00000373798.5:ENST00000644600.1:ENST00000649674.1:ENST00000643173.1:ENST00000343067.9:ENST00000644780.1:ENST00000650265.1:ENST00000648181.1:ENST00000643604.1:ENST00000648891.1:ENST00000373797.2:ENST00000349460.9:ENST00000645184.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	55	2	5.09281	5.17548	5.25815	0.0066548	0.00372534	0.0703807	0.0561984
chr9	100311378	100311477	4308749	0	-	0.393939	(0.378,0.408]	chr9	395838	6	INTRON	INTRON	TEX10	ENSG00000136891.14	ENST00000535814.5:ENST00000374902.9	protein_coding	protein_coding	protein_coding	protein_coding	0	50	2	5.06412	5.174665	5.28521	0.0030522	4.52877e-4	0.0493883	0.0192381
chr1	111136526	111136625	522444	0	-	0.383838	(0.378,0.408]	chr1	61420	46	INTRON	INTRON	DRAM2	ENSG00000156171.15	ENST00000484310.6:ENST00000539140.6:ENST00000286692.8:ENST00000496430.6:ENST00000480600.6:ENST00000490780.5:ENST00000463682.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	50	2	5.17281	5.17454	5.17627	0.00208234	7.27294e-4	0.0411801	0.0245647
chr7	43640901	43640985	3525480	0	-	0.392857	(0.378,0.408]	chr7	328730	4	EXON_LNCRNA	EXON_LNCRNA:SS3_PROX:INTRON	COA1	ENSG00000106603.20	ENST00000415076.6:ENST00000446330.6:ENST00000446564.5:ENST00000438444.5:ENST00000490251.1:ENST00000223336.11:ENST00000310564.10:ENST00000395879.5:ENST00000488813.1:ENST00000415798.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	50	2	5.17281	5.17454	5.17627	0.00208234	7.27294e-4	0.0411801	0.0245647
chr15	65785132	65785232	6209725	0	-	0.32	(0.28,0.32]	chr15	592617	179	INTRON	INTRON	DENND4A	ENSG00000174485.16	ENST00000443035.8:ENST00000431932.6:ENST00000564674.5:ENST00000568515.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	156	2	3.61981	5.174305	6.7288	5.16208e-5	1.00343e-5	0.00585477	0.00246874
chr15	56968268	56968368	6032608	0	+	0.29	(0.28,0.32]	chr15	574663	468	INTRON	INTRON	TCF12	ENSG00000140262.18	ENST00000438423.6:ENST00000267811.9:ENST00000333725.10:ENST00000560190.5:ENST00000559609.5:ENST00000558908.5:ENST00000557843.5:ENST00000557947.5:ENST00000561152.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	53	2	5.04579	5.1741600000000005	5.30253	0.00714672	0.0010319	0.0723634	0.0294094
chr16	75037263	75037363	6389801	0	+	0.33	(0.32,0.35]	chr16	614482	345	INTRON	INTRON	ZNRF1	ENSG00000186187.12	ENST00000335325.9:ENST00000320619.10:ENST00000567962.5:ENST00000566250.5:ENST00000564320.1:ENST00000568511.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	52	2	4.95971	5.173275	5.38684	0.00663522	5.01164e-4	0.0703181	0.020217099999999998
chr12	49371390	49371490	5132987	0	+	0.35	(0.32,0.35]	chr12	483962	1	SS5_PROX	SS5_PROX:INTRON	SPATS2	ENSG00000123352.18	ENST00000550997.5:ENST00000549538.5:ENST00000549412.5:ENST00000550643.5:ENST00000548654.5:ENST00000548710.5:ENST00000549179.5:ENST00000548377.5:ENST00000549298.5:ENST00000552918.6:ENST00000549375.5:ENST00000553127.5:ENST00000321898.10:ENST00000551540.5:ENST00000548777.5:ENST00000552171.1:ENST00000547865.5:ENST00000548388.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	52	2	5.06139	5.172945	5.2845	0.00240071	0.00179023	0.0440612	0.0392749
chr16	24741658	24741757	6329333	0	+	0.333333	(0.32,0.35]	chr16	605933	110	INTRON	INTRON	TNRC6A	ENSG00000090905.19	ENST00000566108.2:ENST00000395799.8:ENST00000315183.11:ENST00000562829.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	52	2	5.06139	5.172945	5.2845	0.00240071	0.00179023	0.0440612	0.0392749
chr16	70431958	70432058	6511394	0	-	0.34	(0.32,0.35]	chr16	630693	90	INTRON	INTRON	ST3GAL2	ENSG00000157350.13	ENST00000342907.3:ENST00000566097.1:ENST00000567586.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	52	2	5.06139	5.172945	5.2845	0.00240071	0.00179023	0.0440612	0.0392749
chr3	197696481	197696574	1904363	0	-	0.354839	(0.35,0.378]	chr3	190850	1	SS5_PROX	SS5_PROX:INTRON	RUBCN	ENSG00000145016.16	ENST00000296343.10:ENST00000273582.9:ENST00000413360.5:ENST00000415452.5:ENST00000447048.1	protein_coding	protein_coding	protein_coding	protein_coding	0	52	2	4.79079	5.1728950000000005	5.555	0.00846427	1.71389e-4	0.0776969	0.0113605
chr5	140403571	140403671	2502843	0	+	0.43	(0.408,0.44]	chr5	239166	9	INTRON	INTRON	ANKHD1	ENSG00000131503.21	ENST00000297183.10:ENST00000616482.4:ENST00000360839.7:ENST00000421134.5:ENST00000394723.7:ENST00000511151.5:ENST00000394722.7	protein_coding	protein_coding	protein_coding	protein_coding	0	50	2	4.99837	5.171925	5.34548	0.00131369	9.40657e-4	0.0333932	0.0280776
chr14	31017433	31017533	5857784	0	-	0.48	(0.476,0.515]	chr14	556512	23	INTRON	INTRON	STRN3	ENSG00000196792.12	ENST00000355683.9:ENST00000357479.10:ENST00000555358.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	109	2	3.77334	5.171845	6.57035	3.52709e-4	3.35892e-7	0.0174637	2.93494e-4
chr6	154809298	154809370	3002585	0	+	0.402778	(0.378,0.408]	chr6	280795	1	INTRON	INTRON	SCAF8	ENSG00000213079.10	ENST00000367186.7:ENST00000417268.3:ENST00000367178.8	protein_coding	protein_coding	protein_coding	protein_coding	0	50	2	5.00459	5.1714400000000005	5.33829	0.00371142	3.59275e-4	0.0535094	0.0169207
chr19	1492271	1492368	6995435	0	+	0.515464	(0.515,0.57]	chr19	693253	5	INTRON	INTRON	REEP6	ENSG00000115255.12	ENST00000591735.2:ENST00000233596.8:ENST00000395479.10	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	47	2	5.06459	5.17055	5.27651	6.03964e-4	5.11033e-4	0.0223465	0.020816
chr2	33041200	33041300	736403	0	+	0.27	[0,0.28]	chr2	84882	196	INTRON	INTRON	LTBP1	ENSG00000049323.16	ENST00000404816.7	protein_coding	protein_coding	protein_coding	protein_coding	0	55	2	4.94561	5.17028	5.39495	0.0150263	0.00133175	0.0994339	0.0335129
chr5	881376	881474	2564507	0	-	0.469388	(0.44,0.476]	chr5	245484	3	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	BRD9	ENSG00000028310.18	ENST00000467963.6:ENST00000495265.5:ENST00000490814.6:ENST00000495794.5:ENST00000489816.5:ENST00000483173.5:ENST00000475706.5:ENST00000466684.5:ENST00000519838.5:ENST00000494422.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	108	2	4.03457	5.170235	6.3059	1.03446e-4	1.74264e-6	0.00915599	7.93825e-4
chr11	87294085	87294185	4845379	0	+	0.31	(0.28,0.32]	chr11	451872	168	INTRON	INTRON	TMEM135	ENSG00000166575.17	ENST00000340353.11:ENST00000305494.6:ENST00000532959.5	protein_coding	protein_coding	protein_coding	protein_coding	0	53	2	5.08622	5.17005	5.25388	0.00385849	0.00227525	0.0542786	0.0437013
chrX	154463190	154463290	7738827	0	+	0.59	(0.57,1]	chrX	792200	4	SS3_PROX	SS3_PROX:INTRON	PLXNA3	ENSG00000130827.6	ENST00000369682.4	protein_coding	protein_coding	protein_coding	protein_coding	3	161	2	4.87222	5.168845	5.46547	2.06614e-10	2.03235e-10	2.32095e-6	1.74811e-6
chr1	29016267	29016364	59980	0	+	0.443299	(0.44,0.476]	chr1	7661	1	INTRON	INTRON	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000647918.1:ENST00000646800.1:ENST00000644342.1:ENST00000646189.1:ENST00000482464.6:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000646260.1:ENST00000373798.5:ENST00000644600.1:ENST00000649674.1:ENST00000643173.1:ENST00000343067.9:ENST00000644780.1:ENST00000650265.1:ENST00000648181.1:ENST00000643604.1:ENST00000648891.1:ENST00000373797.2:ENST00000349460.9:ENST00000645184.1:ENST00000645111.1:ENST00000643302.1:ENST00000645999.1:ENST00000642643.1:ENST00000636666.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	137	2	4.07698	5.167915	6.25885	1.28061e-5	1.53311e-6	0.00283726	7.41369e-4
chr16	85478598	85478698	6414616	0	+	0.41	(0.408,0.44]	chr16	615465	1193	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	1	107	2	3.71874	5.16742	6.6161	3.17998e-4	1.99454e-6	0.0159645	9.6763e-4
chr16	8080722	8080822	6441316	0	-	0.3	(0.28,0.32]	chr16	620351	731	INTRON	INTRON	ENSG00000260289	ENSG00000260289.2	ENST00000670665.1:ENST00000654046.1:ENST00000567103.2	lncRNA	lncRNA	lncRNA	lncRNA	2	155	2	3.69504	5.16698	6.63892	3.39708e-5	1.55907e-5	0.0046443	0.0031803
chr1	96729878	96729978	168022	0	+	0.5	(0.476,0.515]	chr1	18215	59	INTRON	INTRON	PTBP2	ENSG00000117569.19	ENST00000482253.5:ENST00000675735.1:ENST00000609116.5:ENST00000674951.1:ENST00000675080.1:ENST00000426398.3:ENST00000460706.5:ENST00000370197.5:ENST00000370198.5:ENST00000476419.5:ENST00000676292.1:ENST00000676096.1:ENST00000675365.1:ENST00000674579.1:ENST00000675401.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	50	2	4.92529	5.16649	5.40769	0.00180221	6.23078e-4	0.0392772	0.0229151
chr1	113089918	113090018	188261	0	+	0.54	(0.515,0.57]	chr1	20854	159	INTRON	INTRON	LRIG2	ENSG00000198799.12	ENST00000361127.6	protein_coding	protein_coding	protein_coding	protein_coding	1	98	2	3.88003	5.16623	6.45243	1.52864e-4	2.19442e-7	0.0112857	2.22455e-4
chr2	121577190	121577290	1221666	0	-	0.29	(0.28,0.32]	chr2	130051	465	INTRON	INTRON	CLASP1	ENSG00000074054.20	ENST00000263710.8:ENST00000397587.7:ENST00000541377.5:ENST00000409078.8:ENST00000455322.6	protein_coding	protein_coding	protein_coding	protein_coding	0	53	2	4.92929	5.164455	5.39962	0.0098607	7.06751e-4	0.0838128	0.0241881
chr13	113186838	113186936	5651831	0	-	0.346939	(0.32,0.35]	chr13	538587	14	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	PCID2	ENSG00000126226.22	ENST00000337344.9:ENST00000622406.4:ENST00000375479.6:ENST00000375477.5:ENST00000246505.9:ENST00000375459.5:ENST00000493650.5:ENST00000375457.2:ENST00000473462.5:ENST00000475433.5:ENST00000480971.5:ENST00000484641.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	110	2	4.19118	5.1643799999999995	6.13758	8.35107e-5	3.63425e-5	0.00815123	0.00482856
chr19	19474414	19474514	7036040	0	+	0.54	(0.515,0.57]	chr19	701470	13	INTRON	INTRON	GATAD2A	ENSG00000167491.18	ENST00000360315.7:ENST00000609040.5:ENST00000417582.6:ENST00000683918.1:ENST00000432704.5:ENST00000404158.5:ENST00000429242.7:ENST00000358713.7:ENST00000444839.1:ENST00000418032.3:ENST00000473184.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	48	2	4.84936	5.163675	5.47799	0.00146032	2.09356e-4	0.0349875	0.0131276
chr2	227545669	227545768	1026406	0	+	0.484848	(0.476,0.515]	chr2	109623	83	INTRON	INTRON	AGFG1	ENSG00000173744.18	ENST00000409979.6:ENST00000310078.13:ENST00000409315.5:ENST00000373671.7:ENST00000409171.5:ENST00000458212.1	protein_coding	protein_coding	protein_coding	protein_coding	0	49	2	5.12072	5.163585	5.20645	0.00136049	8.42139e-4	0.0336321	0.0263691
chr4	39711067	39711167	1953121	0	+	0.18	[0,0.28]	chr4	195630	123	INTRON	INTRON	UBE2K	ENSG00000078140.14	ENST00000510934.5:ENST00000261427.10:ENST00000438068.6:ENST00000513231.5:ENST00000503368.5:ENST00000445950.2:ENST00000510719.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	55	2	4.88625	5.162965	5.43968	0.0173315	0.00113119	0.104099	0.0308465
chr7	50318105	50318205	3316834	0	+	0.56	(0.515,0.57]	chr7	308247	88	INTRON	INTRON	IKZF1	ENSG00000185811.20	ENST00000642219.1:ENST00000645066.1:ENST00000484847.6:ENST00000646110.1:ENST00000331340.8:ENST00000413698.5:ENST00000349824.8:ENST00000343574.9:ENST00000357364.8:ENST00000440768.6:ENST00000346667.8:ENST00000615491.4:ENST00000359197.9:ENST00000439701.2:ENST00000438033.5:ENST00000492782.6:ENST00000462201.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	47	2	4.99635	5.16296	5.32957	8.06602e-4	4.06834e-4	0.0258804	0.0185763
chr2	58180850	58180949	1126132	0	-	0.242424	[0,0.28]	chr2	120899	81	INTRON	INTRON	FANCL	ENSG00000115392.13	ENST00000696400.1:ENST00000403295.8:ENST00000696492.1:ENST00000427708.7:ENST00000696314.1:ENST00000696315.1:ENST00000696454.1:ENST00000696508.1:ENST00000696548.1:ENST00000696542.1:ENST00000696432.1:ENST00000696319.1:ENST00000403676.6:ENST00000696433.1:ENST00000696434.1:ENST00000696499.1:ENST00000696564.1:ENST00000402135.8:ENST00000696546.1:ENST00000233741.9:ENST00000696316.1:ENST00000696378.1:ENST00000696435.1:ENST00000696493.1:ENST00000696543.1:ENST00000696544.1:ENST00000696545.1:ENST00000696565.1:ENST00000696620.1:ENST00000696621.1:ENST00000696635.1:ENST00000696364.1:ENST00000696634.1:ENST00000696619.1:ENST00000696317.1:ENST00000696622.1:ENST00000696467.1:ENST00000696547.1:ENST00000449070.6:ENST00000696305.1:ENST00000417361.2:ENST00000696338.1:ENST00000696361.1:ENST00000696318.1:ENST00000696371.1:ENST00000696409.1:ENST00000696410.1:ENST00000696455.1:ENST00000696468.1:ENST00000696527.1:ENST00000696567.1:ENST00000696324.1:ENST00000696566.1:ENST00000696623.1:ENST00000446381.6:ENST00000696469.1:ENST00000696624.1:ENST00000696411.1:ENST00000696475.1:ENST00000470506.2:ENST00000696358.1:ENST00000696373.1:ENST00000696394.1:ENST00000696320.1:ENST00000696339.1:ENST00000696395.1:ENST00000696341.1:ENST00000696340.1:ENST00000696374.1:ENST00000696396.1:ENST00000696412.1:ENST00000696342.1:ENST00000696325.1:ENST00000696399.1:ENST00000696398.1:ENST00000696306.1:ENST00000696397.1:ENST00000696360.1:ENST00000696344.1:ENST00000696343.1:ENST00000696637.1:ENST00000696362.1:ENST00000696528.1:ENST00000696497.1:ENST00000696326.1:ENST00000696638.1:ENST00000696625.1:ENST00000696510.1:ENST00000696438.1:ENST00000696496.1:ENST00000696509.1:ENST00000696569.1:ENST00000696457.1:ENST00000696458.1:ENST00000696473.1:ENST00000696495.1:ENST00000696415.1:ENST00000696472.1:ENST00000696494.1:ENST00000696363.1:ENST00000696414.1:ENST00000696529.1:ENST00000696471.1:ENST00000696459.1:ENST00000696498.1:ENST00000696532.1:ENST00000696416.1:ENST00000696530.1:ENST00000696460.1:ENST00000696570.1:ENST00000696531.1:ENST00000696307.1:ENST00000696401.1:ENST00000696345.1:ENST00000696377.1:ENST00000696417.1:ENST00000696594.1:ENST00000696595.1:ENST00000696379.1:ENST00000696346.1:ENST00000696380.1:ENST00000696347.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	55	2	4.97619	5.162545	5.3489	0.00535756	0.00514751	0.0663076	0.062965
chr12	45899973	45900072	5124441	0	+	0.272727	[0,0.28]	chr12	483398	59	INTRON	INTRON	ARID2	ENSG00000189079.17	ENST00000334344.11:ENST00000479608.5:ENST00000444670.5:ENST00000457135.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	56	2	4.84931	5.162224999999999	5.47514	0.00779241	0.00354561	0.0787356	0.0529186
chr16	30736624	30736724	6339056	0	+	0.49	(0.476,0.515]	chr16	607854	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SRCAP	ENSG00000080603.17	ENST00000262518.9:ENST00000395059.6	protein_coding	protein_coding	protein_coding	protein_coding	0	52	2	4.69918	5.1622	5.62522	0.00400966	2.4907e-4	0.057767	0.0145812
chr3	38013836	38013934	1658501	0	-	0.377551	(0.35,0.378]	chr3	170164	18	INTRON	INTRON	PLCD1	ENSG00000187091.14	ENST00000334661.5:ENST00000461445.5:ENST00000463876.5:ENST00000479619.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	53	2	4.7486	5.16212	5.57564	0.00418965	5.93654e-4	0.0591344	0.0225024
chr10	12157327	12157407	4394225	0	+	0.475	(0.44,0.476]	chr10	405392	3	SS5_PROX	SS5_PROX:INTRON	SEC61A2	ENSG00000065665.21	ENST00000379033.7:ENST00000441368.5:ENST00000298428.14:ENST00000475268.5:ENST00000495368.1:ENST00000304267.12:ENST00000472221.5:ENST00000379020.8:ENST00000418772.1:ENST00000419021.1:ENST00000466451.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	52	2	4.60647	5.1615400000000005	5.71661	0.0102339	5.13947e-5	0.0850389	0.00585477
chr19	16095710	16095801	7026176	0	+	0.417582	(0.408,0.44]	chr19	699222	5	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TPM4	ENSG00000167460.17	ENST00000646974.2:ENST00000586499.6:ENST00000647464.2:ENST00000668959.1:ENST00000590180.3:ENST00000655004.1:ENST00000642789.1:ENST00000653979.1:ENST00000645471.1:ENST00000659595.1:ENST00000647037.1:ENST00000643579.2:ENST00000586193.6:ENST00000643494.1:ENST00000670382.1:ENST00000300933.9:ENST00000646575.1:ENST00000586833.7:ENST00000642221.1:ENST00000658224.1:ENST00000344824.11:ENST00000657915.1:ENST00000588483.2:ENST00000664983.1:ENST00000663894.1:ENST00000588032.6:ENST00000653961.1:ENST00000591645.3:ENST00000658489.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	49	2	5.07983	5.161250000000001	5.24267	0.00247652	4.83767e-4	0.0446195	0.0199261
chr19	3967879	3967978	7119026	0	-	0.494949	(0.476,0.515]	chr19	716043	25	INTRON	INTRON	DAPK3	ENSG00000167657.14	ENST00000545797.7:ENST00000301264.7:ENST00000596311.5:ENST00000601824.1:ENST00000593844.1	protein_coding	protein_coding	protein_coding	protein_coding	0	51	2	4.6932	5.161065000000001	5.62893	0.00753088	8.45697e-5	0.074841	0.00776967
chr3	150415288	150415388	1533494	0	+	0.29	(0.28,0.32]	chr3	159801	36	INTRON	INTRON	TSC22D2	ENSG00000196428.13	ENST00000361875.8:ENST00000688009.1:ENST00000480589.1:ENST00000466814.1:ENST00000485421.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	55	2	4.66359	5.160270000000001	5.65695	0.0193496	2.41184e-4	0.108861	0.0136674
chr20	34293465	34293552	7329774	0	-	0.494253	(0.476,0.515]	chr20	746570	1	EXON_MRNA	EXON_MRNA:INTRON	AHCY	ENSG00000101444.13	ENST00000217426.7:ENST00000538132.1:ENST00000480653.5:ENST00000468908.1:ENST00000606061.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	53	2	4.61519	5.1594999999999995	5.70381	0.00528365	1.75496e-4	0.0656295	0.01216
chr13	95201933	95202033	5638873	0	-	0.48	(0.476,0.515]	chr13	537127	66	INTRON	INTRON	ABCC4	ENSG00000125257.16	ENST00000645237.2:ENST00000643051.1:ENST00000643842.1:ENST00000646439.1:ENST00000643816.1:ENST00000536256.3:ENST00000643556.1:ENST00000629385.1:ENST00000642524.1:ENST00000645532.1:ENST00000644471.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	49	2	4.97253	5.15921	5.34589	0.00311573	3.224e-4	0.0498063	0.0159645
chr14	30980987	30981087	5857419	0	-	0.5	(0.476,0.515]	chr14	556508	166	INTRON	INTRON	STRN3	ENSG00000196792.12	ENST00000355683.9:ENST00000357479.10:ENST00000555358.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	49	2	4.97253	5.15921	5.34589	0.00311573	3.224e-4	0.0498063	0.0159645
chr3	60194932	60195032	1711563	0	-	0.48	(0.476,0.515]	chr3	176138	1142	INTRON	INTRON	FHIT	ENSG00000189283.10	ENST00000492590.6:ENST00000476844.5:ENST00000468189.5:ENST00000488467.5	protein_coding	protein_coding	protein_coding	protein_coding	0	49	2	5.05847	5.15896	5.25945	0.00111445	0.00108081	0.0306328	0.0300133
chr2	241298049	241298149	1348393	0	-	0.41	(0.408,0.44]	chr2	141648	251	INTRON	INTRON	HDLBP	ENSG00000115677.18	ENST00000310931.10:ENST00000391976.6:ENST00000428482.5:ENST00000430918.5:ENST00000441124.5:ENST00000413241.5:ENST00000423693.5:ENST00000425989.5:ENST00000420451.5:ENST00000417540.5:ENST00000462130.1:ENST00000496569.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	49	2	5.12568	5.15885	5.19202	0.0016671	7.90919e-4	0.0369207	0.0258324
chr3	172782825	172782920	1563550	0	+	0.410526	(0.408,0.44]	chr3	161789	2	INTRON	INTRON	ECT2	ENSG00000114346.14	ENST00000232458.9:ENST00000540509.5:ENST00000392692.8:ENST00000417960.5:ENST00000441497.6:ENST00000444250.1	protein_coding	protein_coding	protein_coding	protein_coding	1	108	2	4.74451	5.15712	5.56973	3.81714e-4	7.3131e-7	0.0181283	4.77393e-4
chr9	124669107	124669207	4348193	0	-	0.33	(0.32,0.35]	chr9	399255	734	INTRON	INTRON	NR6A1	ENSG00000148200.17	ENST00000487099.7:ENST00000373584.7:ENST00000416460.6:ENST00000344523.8	protein_coding	protein_coding	protein_coding	protein_coding	0	52	2	4.93425	5.15629	5.37833	0.00281048	0.00174321	0.0488779	0.0375363
chr2	127741850	127741950	1225181	0	-	0.41	(0.408,0.44]	chr2	130486	34	INTRON	INTRON	WDR33	ENSG00000136709.12	ENST00000322313.9:ENST00000436787.5:ENST00000393006.5	protein_coding	protein_coding	protein_coding	protein_coding	0	51	2	4.78348	5.155530000000001	5.52758	0.00290352	4.54953e-4	0.0494641	0.0196892
chr19	23657901	23657997	7163666	0	-	0.270833	[0,0.28]	chr19	724026	7	INTRON	INTRON	ZNF675	ENSG00000197372.10	ENST00000601935.5:ENST00000600313.5:ENST00000596211.5:ENST00000359788.9:ENST00000599535.1:ENST00000597074.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	54	2	5.11033	5.15552	5.20071	0.00991388	0.00261806	0.0838372	0.0470772
chr2	39079067	39079167	1101918	0	-	0.28	[0,0.28]	chr2	118302	105	INTRON	INTRON	SOS1	ENSG00000115904.15	ENST00000692089.1:ENST00000402219.8:ENST00000690876.1:ENST00000395038.6:ENST00000691229.1:ENST00000689668.1:ENST00000690679.1:ENST00000461545.2:ENST00000451331.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	54	2	5.11033	5.15552	5.20071	0.00991388	0.00261806	0.0838372	0.0470772
chr2	11452596	11452693	1068804	0	-	0.28866000000000003	(0.28,0.32]	chr2	114126	4	INTRON	INTRON	E2F6	ENSG00000169016.17	ENST00000307236.8:ENST00000542100.5:ENST00000546212.2:ENST00000381525.8:ENST00000444832.5:ENST00000428221.5:ENST00000455198.5:ENST00000437573.5:ENST00000421117.1:ENST00000468775.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	54	2	4.73474	5.155455	5.57617	0.0162835	3.41866e-4	0.101453	0.0164909
chr1	202804589	202804689	620712	0	-	0.34	(0.32,0.35]	chr1	73670	271	INTRON	INTRON	KDM5B	ENSG00000117139.18	ENST00000367265.9:ENST00000648338.1:ENST00000649542.1:ENST00000647757.1:ENST00000367264.7:ENST00000648473.1:ENST00000650569.1:ENST00000648056.1:ENST00000649770.1:ENST00000648469.1:ENST00000650417.1:ENST00000235790.9:ENST00000648738.1:ENST00000648958.1:ENST00000602511.1:ENST00000650368.1:ENST00000649200.1:ENST00000648354.1:ENST00000650493.1:ENST00000470573.5:ENST00000467487.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	51	2	5.07629	5.154780000000001	5.23327	0.00468114	9.33826e-4	0.0600108	0.0278746
chr2	238079055	238079153	1051518	0	+	0.336735	(0.32,0.35]	chr2	111827	6	EXON_MRNA	EXON_MRNA:INTRON	SCLY	ENSG00000132330.18	ENST00000651534.1:ENST00000480357.5:ENST00000254663.12:ENST00000413463.6:ENST00000446202.5:ENST00000409736.6:ENST00000423324.5:ENST00000412508.6:ENST00000443532.5:ENST00000480859.5:ENST00000482031.5:ENST00000431487.5:ENST00000437134.5:ENST00000497951.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	51	2	5.13123	5.154725	5.17822	0.00394704	0.00115625	0.0548259	0.0313436
chr2	128152904	128153004	863109	0	+	0.32	(0.28,0.32]	chr2	96769	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	UGGT1	ENSG00000136731.13	ENST00000259253.11:ENST00000438277.5:ENST00000376723.7:ENST00000488439.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	54	2	4.83165	5.154719999999999	5.47779	0.00527257	0.00187048	0.0656295	0.0390476
chr1	153767073	153767173	227291	0	+	0.28	[0,0.28]	chr1	26115	7	EXON_MRNA	EXON_MRNA:INTRON	INTS3	ENSG00000143624.14	ENST00000318967.7:ENST00000435409.6:ENST00000481797.5:ENST00000512605.4:ENST00000476843.5:ENST00000503133.5:ENST00000368670.5:ENST00000368669.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	54	2	5.05748	5.15463	5.25178	0.0113653	0.0022031	0.0886611	0.0435144
chr18	9928155	9928254	6873485	0	+	0.272727	[0,0.28]	chr18	680874	28	INTRON	INTRON	VAPA	ENSG00000101558.14	ENST00000400000.7:ENST00000577901.5:ENST00000340541.4:ENST00000585042.5:ENST00000584796.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	54	2	5.14777	5.154535	5.1613	0.00866441	0.00311898	0.0787025	0.0512673
chr21	22369796	22369896	7386066	0	+	0.17	[0,0.28]	chr21	752727	1566	INTRON	INTRON	ENSG00000226043	ENSG00000226043.2	ENST00000667099.1:ENST00000654607.1:ENST00000444130.1	lncRNA	lncRNA	lncRNA	lncRNA	0	54	2	5.14777	5.154535	5.1613	0.00866441	0.00311898	0.0787025	0.0512673
chr9	111668768	111668868	4184435	0	+	0.44	(0.408,0.44]	chr9	381677	1	SS3_PROX	SS3_PROX:INTRON	DNAJC25-GNG10:GNG10	ENSG00000244115.1:ENSG00000242616.4	ENST00000374294.3:ENST00000374293.5	protein_coding	protein_coding	protein_coding	protein_coding	0	49	2	4.95817	5.15452	5.35087	0.00372419	3.00323e-4	0.0535094	0.0155054
chr1	89526179	89526273	157412	0	+	0.468085	(0.44,0.476]	chr1	17159	8	INTRON	INTRON	LRRC8B	ENSG00000197147.15	ENST00000330947.7:ENST00000439853.6:ENST00000449440.5:ENST00000640258.1:ENST00000639264.1	protein_coding	protein_coding	protein_coding	protein_coding	1	107	2	4.08544	5.154185	6.22293	7.98065e-5	2.91965e-6	0.00801397	0.00109445
chr1	12278238	12278338	28729	0	+	0.36	(0.35,0.378]	chr1	3475	2	SS5_PROX	SS5_PROX:INTRON	VPS13D	ENSG00000048707.15	ENST00000620676.6:ENST00000613099.4:ENST00000011700.10	protein_coding	protein_coding	protein_coding	protein_coding	0	50	2	5.04512	5.153815	5.26251	0.00393262	6.20882e-4	0.0548259	0.0223951
chr5	111107839	111107939	2451294	0	+	0.37	(0.35,0.378]	chr5	234838	4	SS5_PROX	SS5_PROX:INTRON	WDR36	ENSG00000134987.13	ENST00000505303.5:ENST00000513710.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	50	2	5.04512	5.153815	5.26251	0.00393262	6.20882e-4	0.0548259	0.0223951
chr19	27791901	27792001	7165304	0	-	0.28	[0,0.28]	chr19	724140	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	LINC00662	ENSG00000261824.8	ENST00000671282.1:ENST00000666409.1:ENST00000667518.1:ENST00000665996.1:ENST00000666003.1:ENST00000655465.1:ENST00000670572.1:ENST00000662487.1:ENST00000666658.1:ENST00000658694.1:ENST00000588027.5:ENST00000656086.1:ENST00000658434.1:ENST00000663775.1:ENST00000656191.1:ENST00000654098.1:ENST00000659785.1:ENST00000664720.1:ENST00000665102.1:ENST00000667396.1:ENST00000653317.1:ENST00000590677.6:ENST00000655166.2:ENST00000656647.1:ENST00000654565.1:ENST00000687807.1:ENST00000668933.1:ENST00000659995.1:ENST00000664383.1:ENST00000657677.1:ENST00000654443.1:ENST00000654151.1:ENST00000659922.1:ENST00000668560.1:ENST00000659734.1:ENST00000657730.1:ENST00000664688.1:ENST00000661680.2:ENST00000668513.1:ENST00000670305.1:ENST00000671152.1:ENST00000665874.1:ENST00000670973.1:ENST00000660820.1:ENST00000669191.1:ENST00000656170.1:ENST00000657659.2:ENST00000666734.1:ENST00000668068.1:ENST00000655567.1:ENST00000690384.1:ENST00000690193.1:ENST00000655066.1:ENST00000653459.1:ENST00000664444.1:ENST00000666841.1:ENST00000671227.1:ENST00000586248.5:ENST00000654892.1:ENST00000656728.1:ENST00000664204.1:ENST00000656221.1:ENST00000591338.2:ENST00000658794.1:ENST00000586954.1:ENST00000667678.1:ENST00000663492.1:ENST00000656708.1:ENST00000658654.1:ENST00000659364.1:ENST00000659422.1:ENST00000590523.2:ENST00000660418.1:ENST00000591458.1	lncRNA	lncRNA	lncRNA	lncRNA	0	55	2	4.82433	5.1537	5.48307	0.0200334	9.62922e-4	0.109608	0.0285195
chr16	89788824	89788923	6544526	0	-	0.242424	[0,0.28]	chr16	634547	33	INTRON	INTRON	FANCA	ENSG00000187741.16	ENST00000561667.2:ENST00000389301.8:ENST00000568369.6:ENST00000564475.6:ENST00000696275.1:ENST00000696287.1:ENST00000696286.1:ENST00000696274.1:ENST00000696291.1:ENST00000696276.1:ENST00000567205.2:ENST00000567284.7:ENST00000696277.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	55	2	4.91414	5.15318	5.39222	0.0064519	0.00453865	0.0730725	0.0595107
chr5	177266977	177267074	2555051	0	+	0.546392	(0.515,0.57]	chr5	244024	13	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NSD1	ENSG00000165671.22	ENST00000689549.1:ENST00000354179.9:ENST00000686993.1:ENST00000439151.7:ENST00000689345.1:ENST00000347982.9:ENST00000687453.1:ENST00000685206.1:ENST00000688613.1:ENST00000508029.6:ENST00000692024.1:ENST00000503056.6:ENST00000504457.5:ENST00000505395.5:ENST00000687095.1:ENST00000515735.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	47	2	4.92473	5.152745	5.38076	0.00108255	3.24968e-4	0.0300133	0.0165891
chr1	168051732	168051832	249661	0	+	0.33	(0.32,0.35]	chr1	29648	4	INTRON	INTRON	DCAF6	ENSG00000143164.16	ENST00000432587.6:ENST00000367843.7:ENST00000367840.4:ENST00000312263.10:ENST00000489398.1:ENST00000478668.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	51	2	5.01917	5.152735	5.2863	0.0055659	7.56575e-4	0.0648867	0.0251966
chr14	30678848	30678948	5675625	0	+	0.34	(0.32,0.35]	chr14	540720	16	INTRON	INTRON	SCFD1	ENSG00000092108.22	ENST00000678760.1:ENST00000677690.1:ENST00000678124.1:ENST00000678716.1:ENST00000678402.1:ENST00000679153.1:ENST00000678516.1:ENST00000678802.1:ENST00000679096.1:ENST00000679102.1:ENST00000678475.1:ENST00000676509.1:ENST00000676750.1:ENST00000679165.1:ENST00000676658.1:ENST00000678399.1:ENST00000678185.1:ENST00000677027.1:ENST00000678006.1:ENST00000677413.1:ENST00000555259.5:ENST00000554437.6:ENST00000676834.1:ENST00000678858.1:ENST00000553693.6:ENST00000676914.1:ENST00000676465.1:ENST00000676812.1:ENST00000678669.1:ENST00000676520.1:ENST00000676876.1:ENST00000677617.1:ENST00000676954.1:ENST00000677456.1:ENST00000678735.1:ENST00000679342.1:ENST00000678637.1:ENST00000677176.1:ENST00000557076.6:ENST00000677637.1:ENST00000677974.1:ENST00000458591.7:ENST00000484733.6:ENST00000556768.5:ENST00000544052.6:ENST00000463622.6:ENST00000676674.1:ENST00000677340.1:ENST00000311943.11:ENST00000679075.1:ENST00000678396.1:ENST00000676473.1:ENST00000396629.6:ENST00000678579.1:ENST00000678104.1:ENST00000554819.5:ENST00000554486.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	51	2	5.01917	5.152735	5.2863	0.0055659	7.56575e-4	0.0648867	0.0251966
chr9	5752400	5752499	4098549	0	+	0.323232	(0.32,0.35]	chr9	373441	33	INTRON	INTRON	RIC1	ENSG00000107036.12	ENST00000251879.10:ENST00000414202.7:ENST00000418622.7:ENST00000545641.5:ENST00000276898.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	51	2	5.01917	5.152735	5.2863	0.0055659	7.56575e-4	0.0648867	0.0251966
chr12	25207321	25207420	5297936	0	-	0.50505	(0.476,0.515]	chr12	503893	22	UTR3	UTR3:EXON_MRNA	KRAS	ENSG00000133703.14	ENST00000256078.10:ENST00000311936.8:ENST00000690406.1:ENST00000686877.1:ENST00000685328.1:ENST00000693229.1:ENST00000687356.1:ENST00000692768.1:ENST00000688940.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	106	2	3.95123	5.15271	6.35419	1.50038e-4	1.38245e-6	0.011202	6.96275e-4
chr14	69663711	69663811	5776233	0	+	0.5	(0.476,0.515]	chr14	547310	46	INTRON	INTRON	SUSD6	ENSG00000100647.8	ENST00000342745.5:ENST00000556993.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	49	2	4.99342	5.152	5.31058	0.00139274	9.15544e-4	0.0341261	0.0278396
chr11	3785136	3785236	4895051	0	-	0.24	[0,0.28]	chr11	458931	26	INTRON	INTRON	NUP98	ENSG00000110713.17	ENST00000359171.8:ENST00000324932.12:ENST00000650171.1:ENST00000355260.7:ENST00000397004.8:ENST00000397007.8:ENST00000532475.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	54	2	5.09281	5.151675	5.21054	0.00758653	0.00372534	0.0749063	0.0561984
chr4	152466556	152466656	2274394	0	-	0.19	[0,0.28]	chr4	221120	144	INTRON	INTRON	FBXW7	ENSG00000109670.16	ENST00000281708.10:ENST00000603548.6:ENST00000604872.6:ENST00000647166.1:ENST00000643834.1:ENST00000642901.1	protein_coding	protein_coding	protein_coding	protein_coding	0	57	2	4.71017	5.150695	5.59122	0.0114708	0.00247649	0.0956037	0.0446195
chr1	193038751	193038851	612662	0	-	0.46	(0.44,0.476]	chr1	72474	87	INTRON	INTRON	UCHL5	ENSG00000116750.14	ENST00000367455.8:ENST00000367454.6:ENST00000367450.7:ENST00000367451.8:ENST00000367449.5:ENST00000367448.5:ENST00000421683.1	protein_coding	protein_coding	protein_coding	protein_coding	0	49	2	4.99782	5.15036	5.3029	0.0013223	0.00102616	0.0333932	0.029231300000000002
chr9	112089615	112089714	4315912	0	-	0.474747	(0.44,0.476]	chr9	396924	91	INTRON	INTRON	SUSD1	ENSG00000106868.17	ENST00000374270.8:ENST00000374263.7:ENST00000355396.7:ENST00000374264.6:ENST00000529933.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	49	2	4.99782	5.15036	5.3029	0.0013223	0.00102616	0.0333932	0.029231300000000002
chr1	23507518	23507617	400314	0	-	0.373737	(0.35,0.378]	chr1	48046	12	UTR3	UTR3:EXON_MRNA	E2F2	ENSG00000007968.7	ENST00000361729.3	protein_coding	protein_coding	protein_coding	protein_coding	0	51	2	4.89523	5.149839999999999	5.40445	0.00253947	0.00114224	0.0465056	0.0307966
chr21	15792463	15792563	7370724	0	+	0.29	(0.28,0.32]	chr21	752214	4	INTRON	INTRON	USP25	ENSG00000155313.16	ENST00000400183.7:ENST00000285681.6:ENST00000285679.10:ENST00000351097.9:ENST00000547201.5:ENST00000549362.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	52	2	5.10069	5.149554999999999	5.19842	0.00610574	0.00152333	0.0676501	0.0360297
chr12	108717857	108717957	5406649	0	-	0.41	(0.408,0.44]	chr12	516035	149	INTRON	INTRON	CORO1C	ENSG00000110880.11	ENST00000261401.8:ENST00000541050.5:ENST00000549384.5:ENST00000550542.5:ENST00000552871.5:ENST00000551550.5:ENST00000546571.5:ENST00000551044.1:ENST00000551059.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	50	2	4.85872	5.14906	5.4394	0.00221911	6.50925e-4	0.0435144	0.0232863
chr17	19188614	19188714	6570512	0	+	0.47	(0.44,0.476]	chr17	638907	7	EXON_SMALL	EXON_SMALL	SNORD3A	ENSG00000263934.5	ENST00000584923.1	snoRNA	snoRNA	snoRNA	snoRNA	2	203	2	4.84649	5.1487300000000005	5.45097	1.90652e-4	1.93653e-8	0.0120089	4.48305e-5
chr13	112699999	112700099	5546350	0	+	0.35	(0.32,0.35]	chr13	529917	27	INTRON	INTRON	ATP11A	ENSG00000068650.19	ENST00000375645.8:ENST00000375630.6:ENST00000487903.5:ENST00000419448.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	51	2	4.95971	5.14858	5.33745	0.00663522	6.1485e-4	0.0703181	0.0223951
chr17	82207313	82207396	6852402	0	-	0.337349	(0.32,0.35]	chr17	679087	2	SS5_PROX	SS5_PROX:INTRON	CCDC57	ENSG00000176155.21	ENST00000694881.1:ENST00000389641.9:ENST00000694882.1:ENST00000665763.1:ENST00000578910.2:ENST00000392343.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	51	2	4.95971	5.14858	5.33745	0.00663522	6.1485e-4	0.0703181	0.0223951
chr2	113717154	113717252	1216414	0	-	0.285714	(0.28,0.32]	chr2	129452	16	INTRON	INTRON	SLC35F5	ENSG00000115084.15	ENST00000469702.5:ENST00000245680.7:ENST00000409106.5:ENST00000420066.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	52	2	5.14341	5.1484950000000005	5.15358	0.0052282	0.00185891	0.0633615	0.039946
chr1	109334151	109334251	520367	0	-	0.35	(0.32,0.35]	chr1	61131	62	INTRON	INTRON	SORT1	ENSG00000134243.12	ENST00000538502.5:ENST00000256637.8:ENST00000466471.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	51	2	5.06139	5.148295	5.2352	0.0028268	0.00179023	0.0472361	0.0392749
chr7	111371474	111371574	3622197	0	-	0.33	(0.32,0.35]	chr7	337093	4076	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	51	2	5.06139	5.148295	5.2352	0.0028268	0.00179023	0.0472361	0.0392749
chr3	48534017	48534116	1688678	0	-	0.323232	(0.32,0.35]	chr3	172531	80	INTRON	INTRON	PFKFB4	ENSG00000114268.12	ENST00000232375.8:ENST00000490115.5:ENST00000383734.6:ENST00000416568.5:ENST00000417753.5:ENST00000445633.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	118	2	3.92708	5.14829	6.3695	2.71709e-4	3.63071e-6	0.0151189	0.00124237
chr5	28869931	28870031	2330449	0	+	0.24	[0,0.28]	chr5	225135	594	INTRON	INTRON	LINC02109	ENSG00000259786.7	ENST00000658190.1	lncRNA	lncRNA	lncRNA	lncRNA	1	123	2	4.01072	5.148289999999999	6.28586	2.0925e-4	1.64007e-4	0.0131276	0.0110295
chr3	12651477	12651577	1617306	0	-	0.6	(0.57,1]	chr3	166996	20	INTRON	INTRON	RAF1	ENSG00000132155.14	ENST00000688543.1:ENST00000685348.1:ENST00000251849.9:ENST00000442415.7:ENST00000688444.1:ENST00000692093.1:ENST00000691724.1:ENST00000423275.6:ENST00000687326.1:ENST00000688803.1:ENST00000689876.1:ENST00000686455.1:ENST00000684903.1:ENST00000693312.1:ENST00000690460.1:ENST00000692773.1:ENST00000688625.1:ENST00000693664.1:ENST00000686762.1:ENST00000692311.1:ENST00000692558.1:ENST00000691779.1:ENST00000685738.1:ENST00000690397.1:ENST00000687923.1:ENST00000688269.1:ENST00000693705.1:ENST00000689097.1:ENST00000691899.1:ENST00000689914.1:ENST00000690625.1:ENST00000689389.1:ENST00000687257.1:ENST00000686409.1:ENST00000685653.1:ENST00000689540.1:ENST00000691396.1:ENST00000685437.1:ENST00000689418.1:ENST00000687940.1:ENST00000689481.1:ENST00000491290.2:ENST00000686479.1:ENST00000689033.1:ENST00000692777.1:ENST00000689226.1:ENST00000691718.1:ENST00000692959.1:ENST00000685740.1:ENST00000688753.1:ENST00000688779.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	39	2	4.70427	5.1473700000000004	5.59047	9.25341e-4	5.22506e-6	0.0278396	0.00156931
chr8	27537801	27537890	3721661	0	+	0.404494	(0.378,0.408]	chr8	345886	6	INTRON	INTRON	EPHX2	ENSG00000120915.14	ENST00000517536.5:ENST00000520623.5:ENST00000521400.6:ENST00000521780.5:ENST00000380476.7:ENST00000518379.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	49	2	5.06412	5.147114999999999	5.23011	0.0030522	5.72873e-4	0.0493883	0.0217398
chr8	92789358	92789458	3989999	0	-	0.38	(0.378,0.408]	chr8	365358	29	INTRON	INTRON	FLJ46284	ENSG00000248858.7	ENST00000504861.2	lncRNA	lncRNA	lncRNA	lncRNA	0	49	2	5.06412	5.147114999999999	5.23011	0.0030522	5.72873e-4	0.0493883	0.0217398
chr16	16501018	16501118	6310872	0	+	0.56	(0.515,0.57]	chr16	604098	10	INTRON	INTRON	ENSG00000260126	ENSG00000260126.2	ENST00000567465.2	lncRNA	lncRNA	lncRNA	lncRNA	0	48	2	4.76984	5.147045	5.52425	0.00198034	1.68822e-4	0.0411469	0.0119215
chr6	87224734	87224834	2913957	0	+	0.39	(0.378,0.408]	chr6	275311	9	INTRON	INTRON	ZNF292	ENSG00000188994.13	ENST00000369577.8:ENST00000518845.1:ENST00000339907.8:ENST00000496806.2	protein_coding	protein_coding	protein_coding	protein_coding	0	49	2	5.12128	5.147045	5.17281	0.00251746	7.27294e-4	0.0446195	0.0245647
chr17	59044291	59044391	6801288	0	-	0.55	(0.515,0.57]	chr17	671719	20	INTRON	INTRON	TRIM37	ENSG00000108395.14	ENST00000393066.7:ENST00000577554.5:ENST00000262294.12:ENST00000393065.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	46	2	5.12974	5.146935	5.16413	8.14815e-4	4.54392e-4	0.0263656	0.0192381
chr17	61828542	61828642	6808584	0	-	0.21	[0,0.28]	chr17	672605	194	INTRON	INTRON	BRIP1	ENSG00000136492.10	ENST00000259008.7:ENST00000682755.1:ENST00000682453.1:ENST00000683039.1:ENST00000682989.1:ENST00000682589.1:ENST00000683235.1:ENST00000682477.1:ENST00000684584.1:ENST00000577598.5:ENST00000682066.1:ENST00000584322.2:ENST00000683381.1:ENST00000579028.2:ENST00000682611.1:ENST00000683692.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	54	2	5.03568	5.146915	5.25815	0.0066548	0.00446141	0.0703807	0.0610799
chr8	11865556	11865650	3908838	0	-	0.446809	(0.44,0.476]	chr8	358227	2	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	CTSB	ENSG00000164733.22	ENST00000677671.1:ENST00000678092.1:ENST00000679128.1:ENST00000677873.1:ENST00000676691.1:ENST00000678598.1:ENST00000353047.11:ENST00000677650.1:ENST00000526481.7:ENST00000676825.1:ENST00000678242.1:ENST00000677366.1:ENST00000677544.1:ENST00000530640.7:ENST00000677418.1:ENST00000677047.1:ENST00000676502.1:ENST00000531089.6:ENST00000678629.1:ENST00000678145.1:ENST00000678929.1:ENST00000677819.1:ENST00000677415.1:ENST00000678357.1:ENST00000676755.1:ENST00000679051.1:ENST00000453527.7:ENST00000678067.1:ENST00000679140.1:ENST00000677082.1:ENST00000533455.6:ENST00000531551.5:ENST00000534382.6:ENST00000679214.1:ENST00000531502.6:ENST00000534510.6:ENST00000677865.1:ENST00000533572.6:ENST00000345125.8:ENST00000526645.6:ENST00000534149.6:ENST00000505496.7:ENST00000532392.2:ENST00000676843.1:ENST00000524500.6:ENST00000525076.6:ENST00000527215.7:ENST00000528965.2:ENST00000532656.7:ENST00000526195.6:ENST00000678615.1:ENST00000527243.6:ENST00000530296.6:ENST00000534636.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	107	2	3.81101	5.146875	6.48274	3.0729e-4	5.55982e-7	0.0161362	4.00823e-4
chr6	157908184	157908283	3016620	0	+	0.30303	(0.28,0.32]	chr6	281403	21	EXON_MRNA	EXON_MRNA:INTRON	SNX9	ENSG00000130340.17	ENST00000680863.1:ENST00000679814.1:ENST00000680464.1:ENST00000681186.1:ENST00000679732.1:ENST00000681183.1:ENST00000681534.1:ENST00000681651.1:ENST00000680089.1:ENST00000680078.1:ENST00000680974.1:ENST00000680095.1:ENST00000680015.1:ENST00000681138.1:ENST00000392185.8:ENST00000679790.1:ENST00000680495.1:ENST00000679691.1:ENST00000681881.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	52	2	5.08622	5.14541	5.2046	0.00448664	0.00227525	0.0593175	0.0437013
chr5	1479386	1479475	2565202	0	-	0.393258	(0.378,0.408]	chr5	245692	4	SS5_PROX	SS5_PROX:INTRON	LPCAT1	ENSG00000153395.10	ENST00000475622.5:ENST00000283415.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	49	2	5.00459	5.1449	5.28521	0.00371142	4.52877e-4	0.0535094	0.0192381
chr1	227265406	227265506	651190	0	-	0.53	(0.515,0.57]	chr1	77110	3	INTRON	INTRON	CDC42BPA	ENSG00000143776.20	ENST00000366766.8:ENST00000366769.7:ENST00000334218.9:ENST00000366767.7:ENST00000366764.8:ENST00000478573.6:ENST00000682551.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	46	2	4.97722	5.143215	5.30921	0.00168681	1.98811e-4	0.0370386	0.0122787
chrX	111690670	111690770	7702113	0	+	0.57	(0.515,0.57]	chrX	788221	6	INTRON	INTRON	ALG13	ENSG00000101901.12	ENST00000487141.5:ENST00000394780.8:ENST00000251943.8:ENST00000610588.4:ENST00000621367.4:ENST00000622997.3:ENST00000624161.3:ENST00000636363.1:ENST00000624881.3:ENST00000495283.5:ENST00000486353.5:ENST00000623144.3:ENST00000470971.5:ENST00000623148.3:ENST00000471924.5:ENST00000436609.5:ENST00000470704.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	46	2	5.06459	5.143	5.22141	6.44141e-4	6.03964e-4	0.0231685	0.0223465
chr2	238079644	238079743	1051524	0	+	0.353535	(0.35,0.378]	chr2	111827	12	EXON_MRNA	EXON_MRNA:INTRON	SCLY	ENSG00000132330.18	ENST00000651534.1:ENST00000480357.5:ENST00000254663.12:ENST00000413463.6:ENST00000446202.5:ENST00000409736.6:ENST00000423324.5:ENST00000412508.6:ENST00000443532.5:ENST00000480859.5:ENST00000482031.5:ENST00000431487.5:ENST00000437134.5:ENST00000497951.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	53	2	4.66929	5.142365	5.61544	0.00541617	5.06729e-4	0.066545000000000007	0.020816
chr16	46956439	46956537	6479751	0	-	0.244898	[0,0.28]	chr16	626839	12	UTR3	UTR3:EXON_MRNA	DNAJA2	ENSG00000069345.12	ENST00000317089.10	protein_coding	protein_coding	protein_coding	protein_coding	2	165	2	3.5826	5.14231	6.70202	9.06684e-5	3.67574e-5	0.00796627	0.00515191
chr9	130608693	130608793	4213385	0	+	0.34	(0.32,0.35]	chr9	386279	3	SS5_PROX	SS5_PROX:INTRON	FUBP3	ENSG00000107164.16	ENST00000319725.10:ENST00000650723.1:ENST00000465949.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	51	2	4.89768	5.14226	5.38684	0.00793135	5.01164e-4	0.076155	0.020217099999999998
chr10	133299026	133299126	4717577	0	-	0.33	(0.32,0.35]	chr10	435493	2	SS5_PROX	SS5_PROX:INTRON	TUBGCP2	ENSG00000130640.15	ENST00000252936.8:ENST00000682123.1:ENST00000683612.1:ENST00000683786.1:ENST00000682515.1:ENST00000682905.1:ENST00000682256.1:ENST00000684478.1:ENST00000682161.1:ENST00000682332.1:ENST00000684487.1:ENST00000683673.1:ENST00000682093.1:ENST00000683014.1:ENST00000682631.1:ENST00000683829.1:ENST00000683060.1:ENST00000683383.1:ENST00000682990.1:ENST00000417178.7:ENST00000482278.5:ENST00000543663.6:ENST00000683704.1:ENST00000683552.1:ENST00000684421.1:ENST00000424450.2:ENST00000470829.2:ENST00000683031.1:ENST00000487796.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	51	2	4.99922	5.14186	5.2845	0.00240071	0.00223907	0.0440612	0.0435144
chr15	90542736	90542836	6099856	0	+	0.34	(0.32,0.35]	chr15	580749	22	INTRON	INTRON	CRTC3	ENSG00000140577.17	ENST00000268184.11:ENST00000420329.6:ENST00000691029.1:ENST00000686240.1:ENST00000560098.5:ENST00000561218.5:ENST00000692149.1:ENST00000558619.5:ENST00000560927.1:ENST00000687075.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	51	2	4.99922	5.14186	5.2845	0.00240071	0.00223907	0.0440612	0.0435144
chr7	152310575	152310665	3680030	0	-	0.444444	(0.44,0.476]	chr7	341629	1	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000684262.1:ENST00000490130.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	49	2	4.83202	5.141495	5.45097	0.00525002	1.90652e-4	0.0633615	0.0120089
chr1	197140171	197140271	613644	0	-	0.38	(0.378,0.408]	chr1	72674	3	SS3_PROX	SS3_PROX:INTRON	ASPM	ENSG00000066279.19	ENST00000367409.9:ENST00000680265.1:ENST00000294732.11:ENST00000680710.1:ENST00000681879.1:ENST00000679766.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	102	2	3.96977	5.1407	6.31163	9.19167e-5	1.48999e-5	0.00801007	0.00310543
chr2	180911285	180911384	935772	0	+	0.393939	(0.378,0.408]	chr2	102588	112	INTRON	INTRON	SCHLAP1	ENSG00000281131.1	ENST00000629145.1	lncRNA	lncRNA	lncRNA	lncRNA	0	49	2	4.9425	5.140395	5.33829	0.00452675	3.59275e-4	0.0595107	0.0169207
chr17	32350752	32350852	6597979	0	+	0.29	(0.28,0.32]	chr17	641876	4	SS5_PROX	SS5_PROX:INTRON	ZNF207	ENSG00000010244.19	ENST00000321233.10:ENST00000394673.6:ENST00000394670.9:ENST00000579634.5:ENST00000580759.5:ENST00000342555.10:ENST00000577908.5:ENST00000394679.9:ENST00000582165.1:ENST00000577324.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	218	2	2.78411	5.1395	7.49489	3.40018e-4	1.63631e-7	0.0164308	1.98188e-4
chr16	7952048	7952148	6440028	0	-	0.5	(0.476,0.515]	chr16	620339	573	INTRON	INTRON	ENSG00000260289	ENSG00000260289.2	ENST00000670665.1:ENST00000654046.1:ENST00000567103.2	lncRNA	lncRNA	lncRNA	lncRNA	0	50	2	4.77856	5.138615	5.49867	0.00305743	4.28561e-4	0.0509893	0.0189958
chr6	34824645	34824745	2848725	0	+	0.41	(0.408,0.44]	chr6	269139	9	INTRON	INTRON	UHRF1BP1	ENSG00000065060.18	ENST00000192788.6	protein_coding	protein_coding	protein_coding	protein_coding	0	49	2	4.8253	5.138415	5.45153	0.0056738	1.89064e-4	0.0653997	0.0119565
chr12	22662304	22662404	5095123	0	+	0.56	(0.515,0.57]	chr12	481256	7	INTRON	INTRON	ETNK1	ENSG00000139163.16	ENST00000671733.1:ENST00000266517.9:ENST00000538218.2:ENST00000673406.1:ENST00000673188.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	93	2	4.53971	5.137665	5.73562	6.01042e-5	1.89301e-6	0.00680853	8.35956e-4
chr3	69045581	69045679	1734652	0	-	0.489796	(0.476,0.515]	chr3	176796	6	INTRON	INTRON	TMF1	ENSG00000144747.17	ENST00000398559.7:ENST00000646304.1:ENST00000646708.1:ENST00000488010.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	48	2	5.09423	5.137309999999999	5.18039	0.00204588	6.58744e-4	0.04086	0.0232396
chr3	158377592	158377692	1540964	0	+	0.37	(0.35,0.378]	chr3	160318	223	INTRON	INTRON	RSRC1	ENSG00000174891.14	ENST00000480820.5:ENST00000295930.7:ENST00000471994.5:ENST00000683733.1:ENST00000682221.1:ENST00000683831.1:ENST00000683516.1:ENST00000482822.3:ENST00000476899.6:ENST00000464171.5:ENST00000611884.5:ENST00000682164.1:ENST00000684604.1:ENST00000683899.1:ENST00000682500.1:ENST00000684683.1:ENST00000312179.10:ENST00000475278.6:ENST00000480119.5:ENST00000471911.5:ENST00000683137.1:ENST00000684353.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	51	2	4.71953	5.137264999999999	5.555	0.0103314	1.71389e-4	0.0850389	0.0113605
chr15	65666750	65666849	6208506	0	-	0.363636	(0.35,0.378]	chr15	592450	9	INTRON	INTRON	DENND4A	ENSG00000174485.16	ENST00000443035.8:ENST00000431932.6:ENST00000635620.2	protein_coding	protein_coding	protein_coding	protein_coding	0	50	2	4.9633	5.13694	5.31058	0.00198929	0.00160599	0.0411469	0.0364977
chr17	46544114	46544214	6786371	0	-	0.42	(0.408,0.44]	chr17	669348	53	INTRON	INTRON	ARL17A	ENSG00000185829.18	ENST00000445552.6:ENST00000622488.6:ENST00000329240.10	protein_coding	protein_coding	protein_coding	protein_coding	0	51	2	4.7041	5.136915	5.56973	0.00381677	3.81714e-4	0.0562562	0.0181283
chr7	130076305	130076405	3413652	0	+	0.39	(0.378,0.408]	chr7	319098	51	INTRON	INTRON	KLHDC10	ENSG00000128607.14	ENST00000335420.10:ENST00000463413.1:ENST00000468226.1	protein_coding	protein_coding	protein_coding	protein_coding	1	102	2	4.38735	5.136794999999999	5.88624	1.19481e-4	8.28223e-6	0.00988798	0.0020761
chr5	69116117	69116214	2379810	0	+	0.494845	(0.476,0.515]	chr5	229099	3	CDS	CDS:EXON_MRNA	SLC30A5	ENSG00000145740.20	ENST00000396591.8:ENST00000507354.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	48	2	5.12072	5.136075	5.15143	0.00166579	8.42139e-4	0.0369207	0.0263691
chr10	119522649	119522748	4705554	0	-	0.454545	(0.44,0.476]	chr10	434153	63	INTRON	INTRON	RGS10	ENSG00000148908.15	ENST00000369103.3:ENST00000392865.5:ENST00000369101.7:ENST00000469575.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	48	2	5.08659	5.1357	5.18481	0.00226401	6.21872e-4	0.0425438	0.0223951
chr12	51017363	51017463	5324704	0	-	0.38	(0.378,0.408]	chr12	507738	62	INTRON	INTRON	SLC11A2	ENSG00000110911.17	ENST00000547688.7:ENST00000644495.1:ENST00000643884.1:ENST00000546636.5:ENST00000547198.5:ENST00000394904.9:ENST00000262052.9:ENST00000643123.1:ENST00000646740.1:ENST00000642227.1:ENST00000541174.6:ENST00000546743.5:ENST00000547510.5:ENST00000546488.5:ENST00000547579.5:ENST00000550714.5:ENST00000547732.5:ENST00000548193.5:ENST00000646988.1:ENST00000549625.1:ENST00000681324.1:ENST00000550995.5:ENST00000550329.1:ENST00000548150.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	54	2	4.41169	5.13474	5.85779	0.0199606	2.83884e-5	0.109608	0.00422437
chr1	108178747	108178846	517740	0	-	0.464646	(0.44,0.476]	chr1	60726	171	INTRON	INTRON	SLC25A24	ENSG00000085491.17	ENST00000565488.6:ENST00000264128.13:ENST00000370041.4:ENST00000648874.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	48	2	5.02703	5.13457	5.24211	0.00278015	4.87398e-4	0.0469265	0.0199652
chr10	38027482	38027582	4427066	0	+	0.47	(0.44,0.476]	chr10	408004	97	INTRON	INTRON	ZNF33A	ENSG00000189180.16	ENST00000307441.13:ENST00000374618.7:ENST00000628825.2:ENST00000458705.6:ENST00000432900.7:ENST00000469037.2:ENST00000478556.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	48	2	5.12513	5.134455	5.14378	0.00184943	7.96486e-4	0.0388609	0.0258804
chr5	66172946	66173045	2372788	0	+	0.444444	(0.44,0.476]	chr5	228690	16	INTRON	INTRON	SREK1	ENSG00000153914.16	ENST00000334121.11:ENST00000520953.5:ENST00000522912.5:ENST00000380918.7:ENST00000284041.7:ENST00000519259.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	48	2	5.12513	5.134455	5.14378	0.00184943	7.96486e-4	0.0388609	0.0258804
chr11	75405351	75405448	4831889	0	+	0.43299	(0.408,0.44]	chr11	450864	6	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPS3	ENSG00000149273.15	ENST00000531188.6:ENST00000528439.5:ENST00000530721.5:ENST00000422465.6:ENST00000532872.5:ENST00000278572.10:ENST00000527446.5:ENST00000534440.5:ENST00000526248.5:ENST00000525690.1:ENST00000525933.1:ENST00000530170.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	118	2	4.63425	5.134095	5.63394	7.78928e-5	3.98613e-6	0.00735438	0.00143823
chr8	103404575	103404675	4013607	0	-	0.31	(0.28,0.32]	chr8	367387	4	SS5_PROX	SS5_PROX:INTRON	SLC25A32	ENSG00000164933.12	ENST00000521645.5:ENST00000523256.6:ENST00000297578.9:ENST00000523866.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	113	2	4.13339	5.13328	6.13317	1.54938e-4	6.24069e-5	0.0113252	0.00657207
chr8	129434791	129434890	4059619	0	-	0.343434	(0.32,0.35]	chr8	369584	322	INTRON	INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1:ENST00000676273.1:ENST00000667643.1:ENST00000668791.1:ENST00000663716.1:ENST00000663572.1:ENST00000676148.1:ENST00000667962.1:ENST00000674877.1:ENST00000675316.1:ENST00000674656.1:ENST00000446592.7:ENST00000667341.1:ENST00000675186.1:ENST00000652971.1:ENST00000661447.1:ENST00000674863.1:ENST00000675498.1:ENST00000675527.1:ENST00000676108.1:ENST00000657647.1:ENST00000675589.1:ENST00000675913.1:ENST00000675109.1:ENST00000671632.1:ENST00000671311.1:ENST00000676099.1:ENST00000660652.1:ENST00000675522.1:ENST00000675183.1:ENST00000658861.1:ENST00000663991.1:ENST00000675044.1:ENST00000675435.1:ENST00000674639.1:ENST00000676069.1:ENST00000675532.1:ENST00000674762.1:ENST00000523151.6:ENST00000675948.1:ENST00000665364.1:ENST00000657251.1:ENST00000675166.1:ENST00000674883.1:ENST00000675867.1:ENST00000674580.1:ENST00000675393.1:ENST00000520048.1:ENST00000674906.1:ENST00000676030.1:ENST00000670588.1:ENST00000675072.1:ENST00000664936.1:ENST00000652914.1:ENST00000657069.1	lncRNA	lncRNA	lncRNA	lncRNA	0	51	2	4.93425	5.133215	5.33218	0.00281048	0.00204346	0.0488779	0.04086
chr17	40221137	40221237	6609482	0	+	0.38	(0.378,0.408]	chr17	643734	2	INTRON	INTRON	WIPF2	ENSG00000171475.14	ENST00000323571.9:ENST00000583268.1:ENST00000494757.5:ENST00000582781.5:ENST00000585043.5:ENST00000394103.7:ENST00000583130.5:ENST00000584296.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	49	2	4.98587	5.133100000000001	5.28033	0.00152268	0.00143651	0.0360297	0.0340925
chr18	224200	224300	6938584	0	-	0.24	[0,0.28]	chr18	686249	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	THOC1	ENSG00000079134.13	ENST00000261600.11:ENST00000579232.5:ENST00000580038.5:ENST00000578529.5:ENST00000583228.5:ENST00000631280.2:ENST00000584470.5:ENST00000579891.5:ENST00000577552.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	54	2	4.91414	5.13152	5.3489	0.0064519	0.00514751	0.0730725	0.062965
chr7	99448373	99448473	3361949	0	+	0.43	(0.408,0.44]	chr7	313991	1	SS5_PROX	SS5_PROX:INTRON	CPSF4	ENSG00000160917.15	ENST00000436336.6:ENST00000292476.10:ENST00000451876.5:ENST00000430038.5:ENST00000441580.5:ENST00000412686.5:ENST00000484112.5:ENST00000452047.1:ENST00000471455.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	48	2	5.02028	5.131475	5.24267	0.00303216	4.83767e-4	0.0493883	0.0199261
chr13	27160391	27160491	5566452	0	-	0.34	(0.32,0.35]	chr13	532032	434	INTRON	INTRON	USP12	ENSG00000152484.14	ENST00000282344.11	protein_coding	protein_coding	protein_coding	protein_coding	0	52	2	4.6938	5.131435	5.56907	0.0137794	2.27532e-4	0.0949306	0.0133228
chr12	120528739	120528839	5434376	0	-	0.43	(0.408,0.44]	chr12	519576	4	SS5_PROX	SS5_PROX:INTRON	COQ5	ENSG00000110871.15	ENST00000288532.11:ENST00000445328.6:ENST00000552443.5:ENST00000547943.5:ENST00000551769.1:ENST00000547736.1:ENST00000547448.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	48	2	5.12568	5.131349999999999	5.13702	0.00202889	7.90919e-4	0.04086	0.0258324
chr5	157853331	157853431	2758597	0	-	0.36	(0.35,0.378]	chr5	260304	354	INTRON	INTRON	CLINT1	ENSG00000113282.14	ENST00000523094.5:ENST00000411809.7:ENST00000530742.5:ENST00000523908.5	protein_coding	protein_coding	protein_coding	protein_coding	1	104	2	3.9704	5.1313450000000005	6.29229	1.01653e-4	2.39969e-5	0.00850967	0.00402226
chrX	44922284	44922384	7649093	0	+	0.45	(0.44,0.476]	chrX	782726	479	INTRON	INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000675440.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000621147.5:ENST00000475233.1:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	48	2	4.96491	5.131069999999999	5.29723	0.0034249	3.83422e-4	0.0517761	0.017699199999999998
chr1	43751906	43752006	86530	0	+	0.49	(0.476,0.515]	chr1	11652	127	INTRON	INTRON	ST3GAL3	ENSG00000126091.21	ENST00000646096.1:ENST00000532911.6:ENST00000643597.1:ENST00000643886.1:ENST00000372372.7:ENST00000545417.5:ENST00000330208.6:ENST00000335430.10:ENST00000361400.9:ENST00000347631.8:ENST00000642331.1:ENST00000647237.1:ENST00000643252.1:ENST00000372374.7:ENST00000361392.9:ENST00000646109.1:ENST00000533997.6:ENST00000353126.8:ENST00000645640.1:ENST00000642934.1:ENST00000643283.1:ENST00000351035.8:ENST00000642949.1:ENST00000489897.6:ENST00000646971.1:ENST00000645142.1:ENST00000645705.1:ENST00000530154.5:ENST00000646027.1:ENST00000646069.1:ENST00000642504.1:ENST00000647148.1:ENST00000262915.8:ENST00000479383.6:ENST00000647482.1:ENST00000645394.1:ENST00000647128.1:ENST00000484868.2:ENST00000461066.6:ENST00000361746.9:ENST00000645034.1:ENST00000645165.1:ENST00000647134.1:ENST00000644195.1:ENST00000642194.1:ENST00000372368.7:ENST00000646686.1:ENST00000372366.6:ENST00000361812.9:ENST00000469715.6:ENST00000372369.5:ENST00000372367.5:ENST00000372365.5:ENST00000528371.5:ENST00000533212.5:ENST00000530581.5:ENST00000531816.1:ENST00000531993.6:ENST00000490541.6:ENST00000372362.6:ENST00000531451.5:ENST00000646416.1:ENST00000645117.1:ENST00000533933.6:ENST00000332628.11:ENST00000643813.1:ENST00000644922.1:ENST00000644287.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	49	2	4.85379	5.130739999999999	5.40769	0.00234214	6.23078e-4	0.0442989	0.0229151
chr10	73737428	73737518	4453731	0	+	0.511111	(0.476,0.515]	chr10	411048	3	EXON_LNCRNA	EXON_LNCRNA	GLUD1P3	ENSG00000250959.3	ENST00000690102.1:ENST00000686626.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	49	2	4.85379	5.130739999999999	5.40769	0.00234214	6.23078e-4	0.0442989	0.0229151
chr2	148649547	148649646	891800	0	+	0.333333	(0.32,0.35]	chr2	98781	36	INTRON	INTRON	EPC2	ENSG00000135999.12	ENST00000457184.5:ENST00000258484.11:ENST00000409654.5:ENST00000397424.2	protein_coding	protein_coding	protein_coding	protein_coding	0	52	2	4.79482	5.13062	5.46642	0.00447781	0.00127669	0.0610799	0.0326395
chr16	15959185	15959285	6307854	0	+	0.41	(0.408,0.44]	chr16	603510	90	INTRON	INTRON	ABCC1	ENSG00000103222.20	ENST00000574224.2:ENST00000678422.1:ENST00000677164.1:ENST00000399408.7:ENST00000572882.3:ENST00000399410.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	99	2	4.03533	5.130595	6.22586	6.08082e-5	1.7283e-5	0.00644153	0.00333191
chr4	48746386	48746485	2139285	0	-	0.585859	(0.57,1]	chr4	211018	185	INTRON	INTRON	FRYL	ENSG00000075539.15	ENST00000358350.9:ENST00000503238.6:ENST00000507711.5:ENST00000502520.5:ENST00000505437.5:ENST00000514783.5:ENST00000509886.5:ENST00000515684.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	37	2	5.05449	5.129225	5.20396	1.79828e-4	5.65393e-5	0.0121697	0.00613846
chr10	101809883	101809983	4680889	0	-	0.54	(0.515,0.57]	chr10	432007	3	SS5_PROX	SS5_PROX:INTRON	OGA	ENSG00000198408.14	ENST00000439817.5:ENST00000361464.8:ENST00000357797.9:ENST00000370094.7:ENST00000429860.1	protein_coding	protein_coding	protein_coding	protein_coding	2	121	2	4.05511	5.12853	6.20195	4.60806e-6	1.177e-6	0.00157843	6.26877e-4
chr3	108052958	108053057	1768902	0	-	0.323232	(0.32,0.35]	chr3	178921	11	EXON_MRNA	EXON_MRNA:INTRON	CD47	ENSG00000196776.17	ENST00000361309.6:ENST00000355354.13:ENST00000471694.1:ENST00000517766.5:ENST00000398258.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	158	2	3.29183	5.128410000000001	6.96499	4.15812e-4	8.4008e-8	0.0188225	1.25006e-4
chr22	19407574	19407674	7554180	0	-	0.32	(0.28,0.32]	chr22	772303	3	SS3_PROX	SS3_PROX:INTRON	HIRA:C22orf39	ENSG00000100084.14:ENSG00000242259.9	ENST00000263208.5:ENST00000340170.8:ENST00000509549.5:ENST00000464189.5:ENST00000452818.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	151	2	3.71324	5.12815	6.54306	3.06557e-5	2.46815e-5	0.00441979	0.00408713
chr4	103142947	103143047	2215021	0	-	0.42	(0.408,0.44]	chr4	217032	3	SS5_PROX	SS5_PROX:INTRON	CENPE	ENSG00000138778.14	ENST00000380026.8:ENST00000265148.9	protein_coding	protein_coding	protein_coding	protein_coding	0	48	2	4.95817	5.12798	5.29779	0.00372419	3.80479e-4	0.0535094	0.0176313
chr1	224317094	224317193	644791	0	-	0.363636	(0.35,0.378]	chr1	76193	36	INTRON	INTRON	NVL	ENSG00000143748.18	ENST00000391875.6:ENST00000469968.5:ENST00000482491.5:ENST00000281701.11:ENST00000469075.5:ENST00000340871.8:ENST00000467882.5:ENST00000492281.5:ENST00000488718.5:ENST00000436927.5:ENST00000470989.5:ENST00000470903.5:ENST00000461466.5:ENST00000461546.2:ENST00000468673.5:ENST00000487758.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	50	2	4.79079	5.127365	5.46394	0.00846427	2.60035e-4	0.0776969	0.014326
chr2	48371493	48371593	777891	0	+	0.35	(0.32,0.35]	chr2	87489	84	INTRON	INTRON	FOXN2	ENSG00000170802.17	ENST00000413569.5:ENST00000340553.8	protein_coding	protein_coding	protein_coding	protein_coding	0	50	2	5.07629	5.127255	5.17822	0.00468114	0.00115625	0.0600108	0.0313436
chr15	84989743	84989843	6089009	0	+	0.26	[0,0.28]	chr15	579504	70	INTRON	INTRON	PDE8A	ENSG00000073417.15	ENST00000310298.8:ENST00000557957.5:ENST00000394553.6:ENST00000339708.9:ENST00000478717.5:ENST00000485596.5:ENST00000559742.5:ENST00000559086.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	53	2	5.00263	5.127205	5.25178	0.013055	0.0022031	0.093385	0.0435144
chr8	111031228	111031328	4027513	0	-	0.27	[0,0.28]	chr8	367865	34	INTRON	INTRON	LINC01608	ENSG00000253877.6	ENST00000669893.1:ENST00000669744.1	lncRNA	lncRNA	lncRNA	lncRNA	0	53	2	5.00263	5.127205	5.25178	0.013055	0.0022031	0.093385	0.0435144
chr17	16044168	16044267	6733462	0	-	0.262626	[0,0.28]	chr17	660500	33	INTRON	INTRON	NCOR1	ENSG00000141027.22	ENST00000268712.8:ENST00000395851.5:ENST00000470782.5:ENST00000464381.5:ENST00000395849.6:ENST00000579573.2:ENST00000580554.1:ENST00000579606.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	53	2	5.09281	5.127055	5.1613	0.00866441	0.00372534	0.0787025	0.0561984
chr10	92968270	92968370	4492834	0	+	0.48	(0.476,0.515]	chr10	413795	122	INTRON	INTRON	EXOC6	ENSG00000138190.17	ENST00000671701.1:ENST00000672817.1:ENST00000371552.8:ENST00000443748.6:ENST00000260762.10:ENST00000495132.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	48	2	4.99342	5.126435000000001	5.25945	0.00139274	0.00111445	0.0341261	0.0306328
chr8	123249138	123249237	4041565	0	-	0.353535	(0.35,0.378]	chr8	368600	8	UTR3	UTR3:EXON_MRNA:INTRON	ZHX1-C8orf76:ZHX1	ENSG00000259305.6:ENSG00000165156.15	ENST00000357082.8:ENST00000622816.2:ENST00000297857.3:ENST00000395571.8	protein_coding	protein_coding	protein_coding	protein_coding	0	49	2	5.04512	5.126275	5.20743	0.00393262	7.78116e-4	0.0548259	0.0256531
chr1	204555836	204555936	297827	0	+	0.34	(0.32,0.35]	chr1	34331	63	UTR3	UTR3:EXON_MRNA	MDM4	ENSG00000198625.14	ENST00000367183.7:ENST00000391947.6:ENST00000454264.6:ENST00000612738.4:ENST00000614459.4:ENST00000616250.4:ENST00000367182.8	protein_coding	protein_coding	protein_coding	protein_coding	0	50	2	5.01917	5.12622	5.23327	0.0055659	9.33826e-4	0.0648867	0.0278746
chr17	1368517	1368616	6699291	0	-	0.373737	(0.35,0.378]	chr17	655546	31	INTRON	INTRON	YWHAE	ENSG00000108953.17	ENST00000264335.13:ENST00000571732.5:ENST00000573026.1:ENST00000573196.5:ENST00000575977.1:ENST00000469398.5:ENST00000486241.1:ENST00000489287.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	49	2	5.10226	5.12621	5.15016	0.00327038	9.78549e-4	0.0508595	0.0287765
chr1	93081519	93081618	162561	0	+	0.333333	(0.32,0.35]	chr1	17567	1	INTRON	INTRON	MTF2	ENSG00000143033.18	ENST00000540243.5:ENST00000545708.5:ENST00000474314.6:ENST00000370298.9:ENST00000473430.5:ENST00000494963.5:ENST00000471953.5:ENST00000370303.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	50	2	5.12099	5.126110000000001	5.13123	0.00394704	0.00143632	0.0548259	0.0347139
chr3	42629276	42629373	1406267	0	+	0.206186	[0,0.28]	chr3	147680	22	EXON_MRNA	EXON_MRNA:INTRON	NKTR	ENSG00000114857.19	ENST00000468735.6:ENST00000429888.5:ENST00000232978.13:ENST00000465584.5:ENST00000466553.1:ENST00000498730.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	296	2	2.88588	5.12605	7.36622	5.12919e-5	1.59269e-6	0.00585477	8.36186e-4
chr3	42117528	42117628	1404700	0	+	0.52	(0.515,0.57]	chr3	147510	256	INTRON	INTRON	TRAK1	ENSG00000182606.17	ENST00000487159.5:ENST00000672026.1:ENST00000673621.2:ENST00000484786.5:ENST00000327628.10	protein_coding	protein_coding	protein_coding	protein_coding	1	96	2	4.7272	5.125725	5.52425	1.68822e-4	5.01379e-7	0.0119215	3.78502e-4
chr11	118770548	118770648	5046161	0	-	0.46	(0.44,0.476]	chr11	475786	18	INTRON	INTRON	DDX6	ENSG00000110367.14	ENST00000534980.7:ENST00000620157.4:ENST00000526070.2:ENST00000525082.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	48	2	4.9	5.12516	5.35032	0.00423315	3.02713e-4	0.0572185	0.0155054
chr19	10135149	10135243	7134222	0	-	0.457447	(0.44,0.476]	chr19	719066	10	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	DNMT1	ENSG00000130816.17	ENST00000586667.2:ENST00000586588.5:ENST00000340748.8:ENST00000359526.9:ENST00000592705.5:ENST00000591798.5:ENST00000679103.1:ENST00000677634.1:ENST00000676820.1:ENST00000677250.1:ENST00000677013.1:ENST00000677685.1:ENST00000677616.1:ENST00000676604.1:ENST00000678024.1:ENST00000676868.1:ENST00000677783.1:ENST00000678694.1:ENST00000679100.1:ENST00000589351.6:ENST00000678957.1:ENST00000678107.1:ENST00000678647.1:ENST00000677038.1:ENST00000676610.1:ENST00000678851.1:ENST00000588913.5:ENST00000678804.1:ENST00000679313.1:ENST00000677946.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	48	2	4.99782	5.124805	5.25179	0.0013223	0.00124521	0.0333932	0.0322969
chr19	35541130	35541229	7172449	0	-	0.474747	(0.44,0.476]	chr19	724801	5	EXON_LNCRNA	EXON_LNCRNA	TMEM147-AS1	ENSG00000236144.9	ENST00000589137.5:ENST00000444728.3:ENST00000590717.2:ENST00000660248.1:ENST00000670097.1:ENST00000667891.1:ENST00000660839.1:ENST00000590125.2	lncRNA	lncRNA	lncRNA	lncRNA	0	48	2	4.99782	5.124805	5.25179	0.0013223	0.00124521	0.0333932	0.0322969
chr4	126731831	126731931	2238029	0	-	0.53	(0.515,0.57]	chr4	219029	332	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	0	47	2	4.6831	5.124635	5.56617	0.00471288	5.44229e-5	0.0600108	0.00603408
chr7	2219031	2219131	3466800	0	-	0.52	(0.515,0.57]	chr7	324099	3	SS5_PROX	SS5_PROX:INTRON	MAD1L1	ENSG00000002822.16	ENST00000406869.5:ENST00000399654.6:ENST00000402746.5:ENST00000265854.12:ENST00000445959.5:ENST00000429625.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	90	2	4.29482	5.124475	5.95413	1.89589e-5	9.59903e-6	0.00354138	0.00224473
chr17	28890720	28890819	6745612	0	-	0.373737	(0.35,0.378]	chr17	662823	13	INTRON	INTRON	FLOT2	ENSG00000132589.16	ENST00000394906.6:ENST00000394908.9:ENST00000580805.5:ENST00000577789.5:ENST00000585169.5:ENST00000586827.6:ENST00000593158.1:ENST00000582174.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	49	2	4.98561	5.12406	5.26251	0.00474226	6.20882e-4	0.0600445	0.0223951
chr17	17809539	17809621	6566783	0	+	0.792683	(0.57,1]	chr17	638232	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RAI1	ENSG00000108557.20	ENST00000353383.6:ENST00000582514.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	39	2	4.60161	5.123755	5.6459	0.00142229	3.59512e-6	0.0340865	0.00123456
chr10	58269704	58269804	4435045	0	+	0.4	(0.378,0.408]	chr10	409057	4	SS5_PROX	SS5_PROX:INTRON	CISD1	ENSG00000122873.12	ENST00000333926.6:ENST00000464703.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	49	2	4.91776	5.1237200000000005	5.32968	0.00196368	0.00119786	0.0411469	0.0315806
chr12	57343580	57343680	5338383	0	-	0.31	(0.28,0.32]	chr12	510710	22	INTRON	INTRON	R3HDM2	ENSG00000179912.21	ENST00000402412.6:ENST00000347140.7:ENST00000634871.1:ENST00000448732.1	protein_coding	protein_coding	protein_coding	protein_coding	0	52	2	4.89962	5.123635	5.34765	0.00425206	0.00287138	0.0595557	0.0474836
chr3	16276299	16276399	1374989	0	+	0.3	(0.28,0.32]	chr3	144974	36	INTRON	INTRON	OXNAD1	ENSG00000154814.14	ENST00000627468.2:ENST00000605932.5:ENST00000442255.5:ENST00000435829.6:ENST00000285083.10:ENST00000452581.5:ENST00000606098.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	52	2	4.89962	5.123635	5.34765	0.00425206	0.00287138	0.0595557	0.0474836
chr12	62520920	62521020	5151711	0	+	0.17	[0,0.28]	chr12	487506	119	INTRON	INTRON	MON2	ENSG00000061987.16	ENST00000641654.1:ENST00000546600.5:ENST00000393630.8:ENST00000547095.5:ENST00000552738.5:ENST00000393629.6:ENST00000552115.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	53	2	4.94561	5.123355	5.3011	0.0150263	0.00185843	0.0994339	0.039946
chr17	22161253	22161353	6579276	0	+	0.21	[0,0.28]	chr17	639556	700	INTRON	INTRON	UBBP4	ENSG00000263563.7	ENST00000648259.1:ENST00000688301.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	53	2	4.94561	5.123355	5.3011	0.0150263	0.00185843	0.0994339	0.039946
chr1	32385124	32385220	415100	0	-	0.333333	(0.32,0.35]	chr1	50082	7	INTRON	INTRON	BSDC1	ENSG00000160058.19	ENST00000455895.7:ENST00000444377.5:ENST00000341071.11:ENST00000526031.5:ENST00000419121.6:ENST00000446293.6:ENST00000373520.8:ENST00000527513.5:ENST00000527163.5:ENST00000530485.1:ENST00000474414.5:ENST00000530876.5:ENST00000530753.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	50	2	4.95971	5.123005	5.2863	0.00663522	7.56575e-4	0.0703181	0.0251966
chr7	110821905	110822005	3616696	0	-	0.34	(0.32,0.35]	chr7	337078	962	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000487733.5:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	50	2	4.95971	5.123005	5.2863	0.00663522	7.56575e-4	0.0703181	0.0251966
chr5	139584479	139584579	2500735	0	+	0.33	(0.32,0.35]	chr5	239026	217	INTRON	INTRON	UBE2D2	ENSG00000131508.16	ENST00000511725.5:ENST00000505007.5:ENST00000398733.8:ENST00000510470.1:ENST00000398734.8:ENST00000505548.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	51	2	4.76501	5.122920000000001	5.48083	0.0114287	3.35843e-4	0.0886611	0.0162819
chr17	82898565	82898664	6695700	0	+	0.343434	(0.32,0.35]	chr17	654985	22	INTRON	INTRON	TBCD	ENSG00000141556.22	ENST00000682479.1:ENST00000682722.1:ENST00000684464.1:ENST00000684544.1:ENST00000681983.1:ENST00000684361.1:ENST00000683184.1:ENST00000683282.1:ENST00000684408.1:ENST00000355528.9:ENST00000683444.1:ENST00000684776.1:ENST00000683041.1:ENST00000684760.1:ENST00000684349.1:ENST00000682213.1:ENST00000683009.1:ENST00000682921.1:ENST00000539345.6:ENST00000684000.1:ENST00000684188.1:ENST00000684429.1:ENST00000682610.1:ENST00000683821.1:ENST00000682654.1:ENST00000576160.6:ENST00000571712.5:ENST00000576996.5:ENST00000574801.5:ENST00000683584.1:ENST00000682099.1:ENST00000684559.1:ENST00000571316.5:ENST00000576760.5:ENST00000572984.5:ENST00000683839.1:ENST00000574975.5:ENST00000572953.5:ENST00000571796.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	51	2	4.86622	5.122275	5.37833	0.00354075	0.00174321	0.0546236	0.0375363
chr16	71899092	71899191	6386641	0	+	0.30303	(0.28,0.32]	chr16	614074	31	INTRON	INTRON	IST1	ENSG00000182149.21	ENST00000568581.5:ENST00000540296.5:ENST00000544564.5:ENST00000541571.6:ENST00000538104.5:ENST00000535424.5:ENST00000606369.5:ENST00000537613.5:ENST00000424485.6:ENST00000566536.5:ENST00000378799.11:ENST00000538565.5:ENST00000329908.12:ENST00000538850.5:ENST00000541918.5:ENST00000378798.9:ENST00000534994.5:ENST00000539186.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	51	2	5.04579	5.1221049999999995	5.19842	0.00714672	0.00152333	0.0723634	0.0360297
chr17	82641955	82642055	6853628	0	-	0.31	(0.28,0.32]	chr17	679384	55	INTRON	INTRON	WDR45B	ENSG00000141580.16	ENST00000392325.9:ENST00000572583.5:ENST00000573616.5:ENST00000571817.5:ENST00000574828.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	51	2	5.04579	5.1221049999999995	5.19842	0.00714672	0.00152333	0.0723634	0.0360297
chr7	139415436	139415534	3438158	0	+	0.306122	(0.28,0.32]	chr7	320377	25	INTRON	INTRON	LUC7L2:FMC1-LUC7L2	ENSG00000146963.18:ENSG00000269955.2	ENST00000541170.7:ENST00000541515.3:ENST00000619796.4:ENST00000354926.9:ENST00000456182.5:ENST00000263545.7:ENST00000498518.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	51	2	5.10069	5.12205	5.14341	0.00610574	0.00185891	0.0676501	0.039946
chr8	129489905	129490005	4060177	0	-	0.29	(0.28,0.32]	chr8	369623	2	SS3_PROX	SS3_PROX:INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1:ENST00000676273.1:ENST00000667643.1:ENST00000668791.1:ENST00000663716.1:ENST00000663572.1:ENST00000676148.1:ENST00000667962.1:ENST00000674877.1:ENST00000675316.1:ENST00000674656.1:ENST00000446592.7:ENST00000667341.1:ENST00000675186.1:ENST00000652971.1:ENST00000661447.1:ENST00000674863.1:ENST00000675498.1:ENST00000675527.1:ENST00000676108.1:ENST00000657647.1:ENST00000675589.1:ENST00000675913.1:ENST00000675109.1:ENST00000671632.1:ENST00000671311.1:ENST00000676099.1:ENST00000660652.1:ENST00000675522.1:ENST00000675183.1:ENST00000658861.1:ENST00000663991.1:ENST00000675044.1:ENST00000675435.1:ENST00000674639.1:ENST00000676069.1:ENST00000675532.1:ENST00000674762.1:ENST00000523151.6:ENST00000675948.1:ENST00000665364.1:ENST00000657251.1:ENST00000675166.1:ENST00000674883.1:ENST00000675867.1:ENST00000674580.1:ENST00000675393.1:ENST00000520048.1:ENST00000674906.1:ENST00000676030.1:ENST00000670588.1:ENST00000675072.1:ENST00000664936.1:ENST00000652914.1:ENST00000657069.1	lncRNA	lncRNA	lncRNA	lncRNA	0	51	2	5.10069	5.12205	5.14341	0.00610574	0.00185891	0.0676501	0.039946
chr7	156855879	156855979	3687645	0	-	0.43	(0.408,0.44]	chr7	342096	186	INTRON	INTRON	LMBR1	ENSG00000105983.23	ENST00000353442.10:ENST00000415428.5:ENST00000454132.5:ENST00000434503.5:ENST00000430278.5:ENST00000434278.5:ENST00000444719.5:ENST00000461469.5:ENST00000414218.1:ENST00000434453.1:ENST00000498034.5:ENST00000433968.5:ENST00000485985.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	48	2	4.99837	5.12169	5.24501	0.00137378	0.00131369	0.0336718	0.0333932
chr3	183745779	183745878	1580776	0	+	0.393939	(0.378,0.408]	chr3	163062	86	INTRON	INTRON	YEATS2	ENSG00000163872.16	ENST00000305135.10	protein_coding	protein_coding	protein_coding	protein_coding	0	50	2	4.66338	5.1206	5.57782	0.0103469	1.18586e-4	0.0850389	0.00930884
chr1	108791086	108791185	178702	0	+	0.30303	(0.28,0.32]	chr1	19433	80	INTRON	INTRON	STXBP3	ENSG00000116266.11	ENST00000370008.4:ENST00000495245.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	51	2	4.98872	5.120065	5.25141	0.00838468	0.00125199	0.0774402	0.0328543
chr17	28663738	28663837	6584390	0	+	0.363636	(0.35,0.378]	chr17	640008	10	INTRON	INTRON	SUPT6H	ENSG00000109111.15	ENST00000347486.8:ENST00000314616.11	protein_coding	protein_coding	protein_coding	protein_coding	0	49	2	5.02832	5.11925	5.21018	0.00228003	0.00156444	0.0426265	0.0365263
chr3	52458249	52458337	1428284	0	+	0.375	(0.35,0.378]	chr3	150826	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NISCH	ENSG00000010322.16	ENST00000479054.5:ENST00000345716.9:ENST00000420808.2:ENST00000488380.5	protein_coding	protein_coding	protein_coding	protein_coding	0	49	2	5.02832	5.11925	5.21018	0.00228003	0.00156444	0.0426265	0.0365263
chr3	186797234	186797334	1889604	0	-	0.37	(0.35,0.378]	chr3	189031	3	SS5_PROX	SS5_PROX:INTRON	RFC4	ENSG00000163918.12	ENST00000433496.5:ENST00000392481.6:ENST00000296273.7:ENST00000494047.5:ENST00000418288.5:ENST00000449502.5:ENST00000489028.1:ENST00000427785.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	49	2	5.02832	5.11925	5.21018	0.00228003	0.00156444	0.0426265	0.0365263
chr6	105397152	105397252	3174771	0	-	0.37	(0.35,0.378]	chr6	296104	193	INTRON	INTRON	PREP	ENSG00000085377.15	ENST00000652536.2:ENST00000369110.8	protein_coding	protein_coding	protein_coding	protein_coding	0	49	2	5.02832	5.11925	5.21018	0.00228003	0.00156444	0.0426265	0.0365263
chr7	8075219	8075319	3280064	0	+	0.37	(0.35,0.378]	chr7	304788	37	INTRON	INTRON	GLCCI1	ENSG00000106415.13	ENST00000223145.10:ENST00000489405.5:ENST00000438949.1:ENST00000496617.2:ENST00000482540.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	49	2	5.02832	5.11925	5.21018	0.00228003	0.00156444	0.0426265	0.0365263
chrX	11404660	11404760	7761401	0	-	0.36	(0.35,0.378]	chrX	793522	689	INTRON	INTRON	ARHGAP6	ENSG00000047648.23	ENST00000380736.5:ENST00000337414.9:ENST00000495242.5:ENST00000489330.6:ENST00000380718.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	49	2	5.02832	5.11925	5.21018	0.00228003	0.00156444	0.0426265	0.0365263
chr9	133271163	133271262	4369991	0	-	0.363636	(0.35,0.378]	chr9	402068	86	INTRON	INTRON	ABO	ENSG00000175164.16	ENST00000679909.1:ENST00000453660.4:ENST00000647353.1:ENST00000611156.4:ENST00000538324.2:ENST00000651471.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	153	2	3.81389	5.11871	6.42353	2.44966e-5	1.52654e-6	0.00406237	7.40003e-4
chr1	96801394	96801494	168749	0	+	0.38	(0.378,0.408]	chr1	18249	158	INTRON	INTRON	PTBP2	ENSG00000117569.19	ENST00000482253.5:ENST00000675735.1:ENST00000609116.5:ENST00000674951.1:ENST00000675080.1:ENST00000426398.3:ENST00000370197.5:ENST00000370198.5:ENST00000476419.5:ENST00000676292.1:ENST00000676096.1:ENST00000675365.1:ENST00000674579.1:ENST00000675401.1:ENST00000459735.5:ENST00000476783.5:ENST00000492905.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	48	2	5.06412	5.1184650000000005	5.17281	0.0030522	7.27294e-4	0.0493883	0.0245647
chr8	143857891	143857986	4084089	0	-	0.4	(0.378,0.408]	chr8	371356	7	UTR3	UTR3:EXON_MRNA	EPPK1	ENSG00000261150.3	ENST00000615648.2:ENST00000568225.2	protein_coding	protein_coding	protein_coding	protein_coding	0	48	2	5.06412	5.1184650000000005	5.17281	0.0030522	7.27294e-4	0.0493883	0.0245647
chr11	77807925	77808025	4995849	0	-	0.33	(0.32,0.35]	chr11	472047	429	INTRON	INTRON	RSF1	ENSG00000048649.14	ENST00000308488.11:ENST00000528095.5:ENST00000440064.2:ENST00000467567.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	50	2	4.89768	5.117565	5.33745	0.00793135	6.1485e-4	0.076155	0.0223951
chr16	18159066	18159166	6454225	0	-	0.38	(0.378,0.408]	chr16	621964	76	INTRON	INTRON	ENSG00000260242	ENSG00000260242.1	ENST00000563866.1	lncRNA	lncRNA	lncRNA	lncRNA	0	48	2	5.00459	5.11735	5.23011	0.00371142	5.72873e-4	0.0535094	0.0217398
chr16	74361391	74361490	6523481	0	-	0.383838	(0.378,0.408]	chr16	631626	1	INTRON	INTRON	PDPR2P	ENSG00000214331.8	ENST00000566802.5:ENST00000429810.2	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron	0	48	2	5.11315	5.117215	5.12128	0.00251746	9.26795e-4	0.0446195	0.0278442
chr5	28867531	28867631	2330425	0	+	0.21	[0,0.28]	chr5	225135	570	INTRON	INTRON	LINC02109	ENSG00000259786.7	ENST00000658190.1	lncRNA	lncRNA	lncRNA	lncRNA	0	53	2	4.97619	5.11717	5.25815	0.0066548	0.00535756	0.0703807	0.0663076
chr7	156822636	156822735	3687305	0	-	0.171717	[0,0.28]	chr7	342065	5	UTR3	UTR3:EXON_MRNA:INTRON	LMBR1	ENSG00000105983.23	ENST00000353442.10:ENST00000415428.5:ENST00000454132.5:ENST00000434503.5:ENST00000430278.5:ENST00000434278.5:ENST00000444719.5:ENST00000461469.5:ENST00000414218.1:ENST00000434453.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	53	2	4.97619	5.11717	5.25815	0.0066548	0.00535756	0.0703807	0.0663076
chr12	57537252	57537346	5339615	0	-	0.531915	(0.515,0.57]	chr12	510872	16	EXON_MRNA	EXON_MRNA:INTRON	DCTN2	ENSG00000175203.17	ENST00000676646.1:ENST00000679307.1:ENST00000548249.6:ENST00000678505.1:ENST00000552390.6:ENST00000676956.1:ENST00000678521.1:ENST00000678322.1:ENST00000543672.6:ENST00000678653.1:ENST00000434715.7:ENST00000550201.5:ENST00000549394.5:ENST00000550750.2:ENST00000551611.6:ENST00000550954.5:ENST00000546670.5:ENST00000546965.5:ENST00000547345.5:ENST00000551400.5:ENST00000547480.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	45	2	5.04225	5.117165	5.19208	0.00131841	3.4344e-4	0.0331539	0.0164987
chr2	151442858	151442958	893549	0	+	0.53	(0.515,0.57]	chr2	98955	2	SS3_PROX	SS3_PROX:INTRON	RIF1	ENSG00000080345.18	ENST00000453091.6:ENST00000428287.6:ENST00000444746.7:ENST00000243326.9:ENST00000414861.6:ENST00000430328.6	protein_coding	protein_coding	protein_coding	protein_coding	0	45	2	5.10448	5.11711	5.12974	0.0010345	4.54392e-4	0.029231300000000002	0.0192381
chr3	177078778	177078878	1871245	0	-	0.55	(0.515,0.57]	chr3	187371	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	TBL1XR1	ENSG00000177565.18	ENST00000457928.7:ENST00000430069.5:ENST00000673974.1:ENST00000631253.2:ENST00000352800.10:ENST00000422442.6:ENST00000428970.5:ENST00000424913.5:ENST00000437738.5:ENST00000431421.5:ENST00000635794.1:ENST00000630796.2:ENST00000450267.5:ENST00000630833.2:ENST00000431674.5:ENST00000422066.5:ENST00000443315.5:ENST00000627825.2:ENST00000427349.5:ENST00000413084.5:ENST00000637137.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	45	2	5.10448	5.11711	5.12974	0.0010345	4.54392e-4	0.029231300000000002	0.0192381
chr6	31787029	31787128	3079733	0	-	0.484848	(0.476,0.515]	chr6	287219	9	INTRON	INTRON	VARS1	ENSG00000204394.13	ENST00000375663.8:ENST00000495010.5:ENST00000489979.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	49	2	4.6932	5.116905	5.54061	0.00753088	1.30462e-4	0.074841	0.00983066
chr11	72779533	72779633	4979653	0	-	0.46	(0.44,0.476]	chr11	470596	198	INTRON	INTRON	ARAP1:STARD10	ENSG00000186635.15:ENSG00000214530.10	ENST00000359373.9:ENST00000334805.11:ENST00000543304.5:ENST00000538536.5:ENST00000538437.5:ENST00000545082.5:ENST00000537947.5:ENST00000542989.5:ENST00000546314.5:ENST00000535267.1:ENST00000539138.1:ENST00000535054.1:ENST00000536290.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	48	2	4.83202	5.11677	5.40152	0.00525002	2.39829e-4	0.0633615	0.0136403
chr7	152136544	152136640	3678209	0	-	0.354167	(0.35,0.378]	chr7	341365	18	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	KMT2C	ENSG00000055609.21	ENST00000360104.8:ENST00000262189.11:ENST00000418061.2:ENST00000680877.1:ENST00000424877.6:ENST00000679560.1:ENST00000682040.1:ENST00000683640.1:ENST00000682116.1:ENST00000683120.1:ENST00000682824.1:ENST00000681923.1:ENST00000679393.1:ENST00000683200.1:ENST00000684768.1:ENST00000680029.1:ENST00000683337.1:ENST00000682629.1:ENST00000683178.1:ENST00000682137.1:ENST00000683502.1:ENST00000684261.1:ENST00000684685.1:ENST00000682283.1:ENST00000473186.5:ENST00000684649.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	231	2	4.83373	5.116355	5.39898	1.82773e-6	8.98557e-9	9.15015e-4	3.26849e-5
chr5	74745177	74745277	2642117	0	-	0.47	(0.44,0.476]	chr5	251153	1	SS5_PROX	SS5_PROX:INTRON	GFM2	ENSG00000164347.18	ENST00000345239.6:ENST00000296805.8:ENST00000509430.5:ENST00000427854.6:ENST00000509097.1	protein_coding	protein_coding	protein_coding	protein_coding	0	48	2	4.92968	5.11629	5.3029	0.00171443	0.00102616	0.0381936	0.029231300000000002
chr12	47780478	47780577	5130449	0	+	0.373737	(0.35,0.378]	chr12	483587	3	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	SLC48A1	ENSG00000211584.14	ENST00000442892.2:ENST00000551301.1:ENST00000442218.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	103	2	3.93917	5.11573	6.29229	1.19694e-4	2.39969e-5	0.00936986	0.00402226
chr12	62362443	62362543	5150588	0	+	0.31	(0.28,0.32]	chr12	487365	66	INTRON	INTRON	USP15	ENSG00000135655.16	ENST00000353364.7:ENST00000280377.10:ENST00000547317.5:ENST00000549268.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	51	2	5.02666	5.1156299999999995	5.2046	0.00448664	0.0027935	0.0593175	0.0488769
chr7	5224344	5224442	3272314	0	+	0.530612	(0.515,0.57]	chr7	304133	13	INTRON	INTRON	WIPI2	ENSG00000157954.15	ENST00000401525.7:ENST00000288828.9:ENST00000404704.7:ENST00000466014.5:ENST00000382384.6:ENST00000484262.1:ENST00000480238.5:ENST00000488359.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	46	2	4.76244	5.115625	5.46881	0.00362147	9.03271e-5	0.0533855	0.00795396
chr7	43046786	43046884	3524470	0	-	0.561224	(0.515,0.57]	chr7	328659	18	INTRON	INTRON	ENSG00000232006	ENSG00000232006.9	ENST00000585996.5:ENST00000629291.2:ENST00000653897.1:ENST00000657132.1:ENST00000666102.1:ENST00000609382.3:ENST00000630282.2:ENST00000628246.2:ENST00000631088.1:ENST00000631050.2:ENST00000628203.2	lncRNA	lncRNA	lncRNA	lncRNA	0	46	2	4.76244	5.115625	5.46881	0.00362147	9.03271e-5	0.0533855	0.00795396
chr1	20762206	20762304	389608	0	-	0.367347	(0.35,0.378]	chr1	46537	46	INTRON	INTRON	HP1BP3	ENSG00000127483.19	ENST00000438032.6:ENST00000312239.10:ENST00000375003.6:ENST00000419948.5:ENST00000424732.5	protein_coding	protein_coding	protein_coding	protein_coding	1	104	2	4.39548	5.1145499999999995	5.83362	2.04087e-4	9.17511e-6	0.0129859	0.00217645
chr8	73657991	73658091	3970024	0	-	0.39	(0.378,0.408]	chr8	364130	37	INTRON	INTRON	STAU2	ENSG00000040341.18	ENST00000524300.6:ENST00000522695.5:ENST00000523558.5:ENST00000521210.5:ENST00000355780.9:ENST00000519961.5:ENST00000521727.5:ENST00000521451.5:ENST00000522509.5:ENST00000517542.5:ENST00000518981.5:ENST00000518767.5:ENST00000518502.5:ENST00000521293.5:ENST00000521447.5:ENST00000524104.5:ENST00000522962.5:ENST00000521419.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	48	2	4.9425	5.113855	5.28521	0.00452675	4.52877e-4	0.0595107	0.0192381
chr21	21197054	21197154	7380980	0	+	0.37	(0.35,0.378]	chr21	752602	1981	INTRON	INTRON	NCAM2	ENSG00000154654.15	ENST00000400546.6	protein_coding	protein_coding	protein_coding	protein_coding	2	149	2	3.60098	5.113555	6.62613	7.66584e-5	4.19202e-7	0.00781154	3.37394e-4
chr19	9419872	9419968	7132404	0	-	0.416667	(0.408,0.44]	chr19	718741	7	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	ZNF266	ENSG00000174652.20	ENST00000592904.7:ENST00000588221.5:ENST00000588933.5:ENST00000648978.1:ENST00000590306.5:ENST00000651268.1:ENST00000592292.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	48	2	4.93024	5.11318	5.29612	0.00170369	0.00113523	0.0381936	0.0307488
chr6	151389229	151389328	3247729	0	-	0.363636	(0.35,0.378]	chr6	301777	113	INTRON	INTRON	ZBTB2	ENSG00000181472.5	ENST00000325144.5	protein_coding	protein_coding	protein_coding	protein_coding	0	54	2	4.49626	5.112455000000001	5.72865	0.00917582	3.18898e-4	0.0855292	0.016499
chr16	89345116	89345216	6542128	0	-	0.38	(0.378,0.408]	chr16	634215	14	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000647238.1:ENST00000644045.1:ENST00000643147.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	132	2	3.79522	5.112355	6.42949	1.07161e-5	7.97499e-6	0.00239957	0.00213244
chrX	134474411	134474501	7724214	0	+	0.433333	(0.408,0.44]	chrX	790160	6	INTRON	INTRON	HPRT1	ENSG00000165704.15	ENST00000298556.8:ENST00000462974.5:ENST00000475720.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	49	2	4.67894	5.112275	5.54561	0.0087648	1.20601e-4	0.0788605	0.00938389
chr7	75526507	75526599	3559136	0	-	0.413043	(0.408,0.44]	chr7	331609	1	INTRON	INTRON	PMS2P3	ENSG00000127957.19	ENST00000693762.1:ENST00000394921.8:ENST00000430602.5:ENST00000418756.5:ENST00000437568.6:ENST00000533167.5:ENST00000691440.1:ENST00000422064.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	4	179	2	3.50873	5.11102	6.71331	2.184e-6	1.12417e-6	9.21373e-4	6.65117e-4
chr16	16632268	16632368	6312186	0	+	0.32	(0.28,0.32]	chr16	604102	194	INTRON	INTRON	ENSG00000260126:ENSG00000287905	ENSG00000260126.2:ENSG00000287905.1	ENST00000567465.2:ENST00000660246.1	lncRNA	lncRNA	lncRNA	lncRNA	1	123	2	4.06923	5.110125	6.15102	1.83227e-4	2.27393e-5	0.0122816	0.00372337
chr1	246279520	246279620	678430	0	-	0.37	(0.35,0.378]	chr1	79733	859	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000453676.5:ENST00000462422.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	110	2	3.89653	5.11	6.32347	2.61932e-4	2.81578e-6	0.0149313	0.00107271
chr10	87243961	87244061	4660395	0	-	0.28	[0,0.28]	chr10	429433	39	EXON_LNCRNA	EXON_LNCRNA:INTRON	NUTM2A-AS1	ENSG00000223482.9	ENST00000692417.1:ENST00000688214.1:ENST00000659257.1:ENST00000671543.1:ENST00000451940.6:ENST00000687947.1:ENST00000663644.1:ENST00000684884.1:ENST00000664664.1:ENST00000446751.6:ENST00000456104.5:ENST00000433530.7:ENST00000688257.1:ENST00000433920.5:ENST00000687925.1:ENST00000666515.2:ENST00000688926.1:ENST00000447424.6:ENST00000690598.1:ENST00000663113.1:ENST00000667520.2	lncRNA	lncRNA	lncRNA	lncRNA	0	57	2	4.55618	5.109955	5.66373	0.0171034	0.00196371	0.110899	0.0401678
chr3	179375541	179375641	1567219	0	+	0.34	(0.32,0.35]	chr3	162121	2	SS5_PROX	SS5_PROX:INTRON	MFN1	ENSG00000171109.19	ENST00000471841.6:ENST00000357390.8:ENST00000263969.9:ENST00000474903.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	51	2	4.6938	5.10971	5.52562	0.0137794	2.76065e-4	0.0949306	0.0147997
chr17	47085946	47086046	6788500	0	-	0.26	[0,0.28]	chr17	669501	32	INTRON	INTRON	ENSG00000262879	ENSG00000262879.6	ENST00000668245.1:ENST00000573341.6:ENST00000572864.5:ENST00000576938.1:ENST00000574741.1	lncRNA	lncRNA	lncRNA	lncRNA	0	53	2	4.82433	5.10964	5.39495	0.0200334	0.00133175	0.109608	0.0335129
chr1	168059723	168059823	249741	0	+	0.53	(0.515,0.57]	chr1	29648	84	INTRON	INTRON	DCAF6	ENSG00000143164.16	ENST00000432587.6:ENST00000367843.7:ENST00000367840.4:ENST00000312263.10:ENST00000489398.1:ENST00000478668.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	45	2	4.90912	5.109165	5.30921	0.0021669	1.98811e-4	0.0417866	0.0122787
chr21	5143491	5143590	7424647	0	-	0.525253	(0.515,0.57]	chr21	757361	2	SS3_PROX	SS3_PROX:INTRON	ENSG00000275464	ENSG00000275464.5	ENST00000617716.4:ENST00000633593.1:ENST00000633442.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	45	2	4.90912	5.109165	5.30921	0.0021669	1.98811e-4	0.0417866	0.0122787
chr10	14933624	14933709	4561687	0	-	0.329412	(0.32,0.35]	chr10	420980	3	INTRON	INTRON	DCLRE1C	ENSG00000152457.18	ENST00000378289.8:ENST00000378278.7:ENST00000378246.6:ENST00000357717.6:ENST00000378258.5:ENST00000378249.5:ENST00000396817.6:ENST00000378255.5:ENST00000378254.5:ENST00000418843.5	protein_coding	protein_coding	protein_coding	protein_coding	0	51	2	4.79482	5.108935	5.42305	0.00447781	0.00149027	0.0610799	0.035
chr7	151368963	151369040	3449358	0	+	0.402597	(0.378,0.408]	chr7	322388	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	NUB1	ENSG00000013374.17	ENST00000413040.7:ENST00000568733.6:ENST00000470229.6:ENST00000497987.1:ENST00000460712.1:ENST00000480714.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	48	2	4.87762	5.1079550000000005	5.33829	0.00553849	3.59275e-4	0.0648867	0.0169207
chr10	68763789	68763889	4442714	0	+	0.35	(0.32,0.35]	chr10	409684	22	INTRON	INTRON	CCAR1	ENSG00000060339.14	ENST00000630771.2:ENST00000543719.5:ENST00000541012.5:ENST00000265872.11:ENST00000539539.5:ENST00000543229.5:ENST00000536012.5:ENST00000543225.5:ENST00000540210.5:ENST00000479143.2:ENST00000543706.1:ENST00000539250.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	115	2	3.75051	5.10755	6.46459	5.8762e-4	2.06686e-6	0.0224695	8.86423e-4
chrX	120443749	120443846	7876231	0	-	0.484536	(0.476,0.515]	chrX	802113	7	INTRON	INTRON	LAMP2	ENSG00000005893.16	ENST00000200639.9:ENST00000434600.6:ENST00000486593.5:ENST00000371335.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	48	2	4.76827	5.1074	5.44653	0.00600704	2.03754e-4	0.0674604	0.0124395
chr1	161116452	161116552	573819	0	-	0.48	(0.476,0.515]	chr1	69586	137	INTRON	INTRON	PFDN2	ENSG00000143256.5	ENST00000468311.1:ENST00000368010.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	48	2	4.85379	5.106870000000001	5.35995	0.00234214	7.54256e-4	0.0442989	0.0251179
chr9	112313778	112313878	4317762	0	-	0.32	(0.28,0.32]	chr9	397079	155	INTRON	INTRON	PTBP3	ENSG00000119314.16	ENST00000334318.10:ENST00000458258.5:ENST00000374257.6:ENST00000374255.6:ENST00000343327.6:ENST00000487997.1:ENST00000210227.4:ENST00000450374.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	149	2	3.73123	5.106785	6.48234	3.28303e-5	2.76848e-5	0.00483531	0.00415129
chr9	105723819	105723919	4182837	0	+	0.51	(0.476,0.515]	chr9	381513	8	INTRON	INTRON	TMEM38B	ENSG00000095209.12	ENST00000374692.8:ENST00000374688.5:ENST00000435034.5:ENST00000451560.1	protein_coding	protein_coding	protein_coding	protein_coding	0	47	2	5.05847	5.1049500000000005	5.15143	0.00166579	0.00108081	0.0369207	0.0300133
chr12	24916960	24917060	5297591	0	-	0.28	[0,0.28]	chr12	503884	140	INTRON	INTRON	BCAT1	ENSG00000060982.15	ENST00000261192.12:ENST00000342945.9:ENST00000539780.5:ENST00000546285.1	protein_coding	protein_coding	protein_coding	protein_coding	0	58	2	4.38387	5.1039650000000005	5.82406	0.0501911	2.47093e-4	0.156383	0.0139149
chr10	68664750	68664850	4441934	0	+	0.47	(0.44,0.476]	chr10	409546	118	INTRON	INTRON	TET1	ENSG00000138336.9	ENST00000373644.5	protein_coding	protein_coding	protein_coding	protein_coding	0	47	2	4.96491	5.10351	5.24211	0.0034249	4.87398e-4	0.0517761	0.0199652
chr21	6258844	6258944	7425227	0	-	0.29	(0.28,0.32]	chr21	757453	36	INTRON	INTRON	ENSG00000275496	ENSG00000275496.4	ENST00000621924.4:ENST00000617746.4:ENST00000624446.1:ENST00000623405.3:ENST00000623575.3:ENST00000623506.1	lncRNA	lncRNA	lncRNA	lncRNA	0	53	2	4.58875	5.10294	5.61713	0.0230574	2.86819e-4	0.118056	0.0150568
chr19	9619074	9619163	7133140	0	-	0.426966	(0.408,0.44]	chr19	718869	1	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	ZNF561	ENSG00000171469.11	ENST00000444802.5:ENST00000424629.5:ENST00000302851.8:ENST00000326044.9:ENST00000444611.5:ENST00000495503.5:ENST00000443819.5:ENST00000465974.5:ENST00000457965.5:ENST00000479943.5:ENST00000444519.5:ENST00000421525.5:ENST00000470932.5:ENST00000435550.5:ENST00000471053.5:ENST00000480167.5:ENST00000490893.5:ENST00000485150.1:ENST00000497409.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	47	2	5.02028	5.1028199999999995	5.18536	0.00303216	6.17381e-4	0.0493883	0.0223951
chr1	51763453	51763552	100879	0	+	0.414141	(0.408,0.44]	chr1	13345	11	INTRON	INTRON	OSBPL9	ENSG00000117859.19	ENST00000371714.5:ENST00000428468.6:ENST00000447887.5:ENST00000495776.5:ENST00000435274.6:ENST00000453295.5:ENST00000489990.5:ENST00000532975.5:ENST00000531828.5:ENST00000361556.9:ENST00000526917.5:ENST00000462759.5:ENST00000486942.5:ENST00000528603.5:ENST00000475697.5:ENST00000531061.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	47	2	5.07983	5.102755	5.12568	0.00247652	7.90919e-4	0.0446195	0.0258324
chr1	151626228	151626327	225862	0	+	0.272727	[0,0.28]	chr1	25862	114	INTRON	INTRON	SNX27	ENSG00000143376.14	ENST00000642376.1:ENST00000368843.8:ENST00000458013.7:ENST00000368841.7:ENST00000642479.1:ENST00000642349.1:ENST00000643179.1:ENST00000643814.1:ENST00000642582.1:ENST00000644970.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	52	2	5.05748	5.102625	5.14777	0.0113653	0.00311898	0.0886611	0.0512673
chr21	39344845	39344945	7465659	0	-	0.2	[0,0.28]	chr21	760595	3	SS5_PROX	SS5_PROX:INTRON	HMGN1	ENSG00000205581.11	ENST00000492280.5:ENST00000431390.5:ENST00000486741.5:ENST00000380749.10:ENST00000288344.14:ENST00000652622.1:ENST00000436324.5:ENST00000380748.5:ENST00000419378.5:ENST00000489072.5:ENST00000482192.5:ENST00000380747.5:ENST00000485550.5:ENST00000490032.5:ENST00000443046.5:ENST00000464078.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	52	2	5.05748	5.102625	5.14777	0.0113653	0.00311898	0.0886611	0.0512673
chr4	144012953	144013053	2251686	0	-	0.28	[0,0.28]	chr4	219991	2	SS3_PROX	SS3_PROX:INTRON	GYPB	ENSG00000250361.9	ENST00000502664.6:ENST00000506679.5:ENST00000429670.3:ENST00000507009.5:ENST00000513128.5:ENST00000505583.5:ENST00000506516.6:ENST00000513557.5:ENST00000513677.5:ENST00000511198.5:ENST00000504951.6:ENST00000510196.6:ENST00000503255.5:ENST00000638448.1:ENST00000508618.5:ENST00000508841.1:ENST00000642935.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	52	2	5.05748	5.102625	5.14777	0.0113653	0.00311898	0.0886611	0.0512673
chr11	33267067	33267166	4766718	0	+	0.424242	(0.408,0.44]	chr11	440839	80	INTRON	INTRON	HIPK3	ENSG00000110422.12	ENST00000525975.5:ENST00000303296.9:ENST00000379016.7:ENST00000456517.2:ENST00000531504.5	protein_coding	protein_coding	protein_coding	protein_coding	0	48	2	4.85872	5.1021	5.34548	0.00221911	9.40657e-4	0.0435144	0.0280776
chr1	243226820	243226920	668434	0	-	0.53	(0.515,0.57]	chr1	79325	11	INTRON	INTRON	CEP170	ENSG00000143702.16	ENST00000366544.5:ENST00000366543.5:ENST00000366542.6:ENST00000522191.5:ENST00000523424.5:ENST00000522522.5:ENST00000522995.1:ENST00000523581.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	117	2	3.79065	5.102005	6.41336	7.49445e-6	1.26238e-6	0.00195238	7.26942e-4
chr2	165934641	165934740	1253775	0	-	0.272727	[0,0.28]	chr2	132918	17	EXON_MRNA	EXON_MRNA:INTRON	TTC21B	ENSG00000123607.16	ENST00000680888.1:ENST00000680947.1:ENST00000681083.1:ENST00000681024.1:ENST00000680690.1:ENST00000679676.1:ENST00000679967.1:ENST00000679356.1:ENST00000680327.1:ENST00000681502.1:ENST00000681483.1:ENST00000680657.1:ENST00000679931.1:ENST00000681952.1:ENST00000652557.1:ENST00000679799.1:ENST00000681819.1:ENST00000243344.8:ENST00000679840.1:ENST00000680448.1:ENST00000681606.1:ENST00000679671.1:ENST00000464374.5:ENST00000680698.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	52	2	5.09281	5.101570000000001	5.11033	0.00991388	0.00372534	0.0838372	0.0561984
chr3	12626226	12626326	1617050	0	-	0.31	(0.28,0.32]	chr3	166982	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	RAF1	ENSG00000132155.14	ENST00000688543.1:ENST00000685348.1:ENST00000251849.9:ENST00000442415.7:ENST00000688444.1:ENST00000692093.1:ENST00000691724.1:ENST00000423275.6:ENST00000687326.1:ENST00000688803.1:ENST00000689876.1:ENST00000686455.1:ENST00000684903.1:ENST00000693312.1:ENST00000690460.1:ENST00000692773.1:ENST00000688625.1:ENST00000693664.1:ENST00000686762.1:ENST00000692311.1:ENST00000692558.1:ENST00000691779.1:ENST00000685738.1:ENST00000690397.1:ENST00000687923.1:ENST00000688269.1:ENST00000693705.1:ENST00000689097.1:ENST00000691899.1:ENST00000689914.1:ENST00000690625.1:ENST00000689389.1:ENST00000687257.1:ENST00000686409.1:ENST00000685653.1:ENST00000689540.1:ENST00000691396.1:ENST00000685437.1:ENST00000689418.1:ENST00000687940.1:ENST00000689481.1:ENST00000491290.2:ENST00000686479.1:ENST00000689033.1:ENST00000685959.1:ENST00000692777.1:ENST00000689226.1:ENST00000691718.1:ENST00000692959.1:ENST00000685740.1:ENST00000688753.1:ENST00000688779.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	51	2	4.80255	5.101084999999999	5.39962	0.0137406	7.06751e-4	0.0949306	0.0241881
chr1	19236641	19236741	387070	0	-	0.52	(0.515,0.57]	chr1	46206	1	SS5_PROX	SS5_PROX:INTRON	EMC1	ENSG00000127463.16	ENST00000477853.6:ENST00000688219.1:ENST00000690732.1:ENST00000690451.1:ENST00000688667.1:ENST00000685099.1:ENST00000685594.1:ENST00000690823.1:ENST00000692207.1:ENST00000688332.1:ENST00000375199.7:ENST00000375208.7:ENST00000486405.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	45	2	4.92473	5.10062	5.27651	0.00108255	5.11033e-4	0.0300133	0.020816
chr1	174269024	174269124	258211	0	+	0.56	(0.515,0.57]	chr1	30773	161	INTRON	INTRON	RABGAP1L	ENSG00000152061.24	ENST00000357444.10:ENST00000251507.8:ENST00000681986.1:ENST00000457696.1	protein_coding	protein_coding	protein_coding	protein_coding	0	45	2	4.92473	5.10062	5.27651	0.00108255	5.11033e-4	0.0300133	0.020816
chr3	197174001	197174101	1902258	0	-	0.53	(0.515,0.57]	chr3	190636	119	INTRON	INTRON	DLG1	ENSG00000075711.21	ENST00000667157.1:ENST00000346964.6:ENST00000656428.1:ENST00000663148.1:ENST00000655488.1:ENST00000357674.9:ENST00000671185.1:ENST00000658701.1:ENST00000667104.1:ENST00000661336.1:ENST00000669565.1:ENST00000670455.1:ENST00000656087.1:ENST00000670366.1:ENST00000653583.1:ENST00000653795.1:ENST00000671246.1:ENST00000661453.1:ENST00000665728.1:ENST00000664564.1:ENST00000653331.1:ENST00000660432.1:ENST00000660898.1:ENST00000657381.1:ENST00000659221.1:ENST00000654737.1:ENST00000669332.1:ENST00000659716.1:ENST00000660553.1:ENST00000664991.1:ENST00000419354.5:ENST00000661440.1:ENST00000667971.1:ENST00000670935.1:ENST00000668578.1:ENST00000666007.1:ENST00000661229.1:ENST00000660237.1:ENST00000657098.1:ENST00000661013.1:ENST00000436682.6:ENST00000452595.5:ENST00000662727.1:ENST00000422288.6:ENST00000448528.6:ENST00000443183.5:ENST00000656944.1:ENST00000392382.6:ENST00000450955.5:ENST00000658155.1:ENST00000669714.1:ENST00000654733.1:ENST00000469073.2:ENST00000419227.5:ENST00000392381.7:ENST00000471733.5:ENST00000419553.6:ENST00000447466.1:ENST00000661808.1:ENST00000453607.5:ENST00000456699.6:ENST00000392380.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	45	2	4.92473	5.10062	5.27651	0.00108255	5.11033e-4	0.0300133	0.020816
chr6	30591856	30591954	2841084	0	+	0.530612	(0.515,0.57]	chr6	266985	3	INTRON	INTRON	ABCF1	ENSG00000204574.14	ENST00000475993.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	0	45	2	4.92473	5.10062	5.27651	0.00108255	5.11033e-4	0.0300133	0.020816
chr9	96601713	96601813	4296516	0	-	0.53	(0.515,0.57]	chr9	395079	346	INTRON	INTRON	CDC14B	ENSG00000081377.17	ENST00000474602.5:ENST00000412285.6:ENST00000375241.6:ENST00000375240.7:ENST00000463569.5:ENST00000415608.1:ENST00000496750.5:ENST00000463547.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	45	2	4.92473	5.10062	5.27651	0.00108255	5.11033e-4	0.0300133	0.020816
chr7	105313868	105313968	3603155	0	-	0.29	(0.28,0.32]	chr7	336161	69	INTRON	INTRON	SRPK2	ENSG00000135250.17	ENST00000393651.8:ENST00000482897.5:ENST00000460391.5:ENST00000462282.5:ENST00000465112.5:ENST00000482862.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	51	2	4.89962	5.100574999999999	5.30153	0.00425206	0.00332518	0.0595557	0.0512081
chr16	67779173	67779273	6505409	0	-	0.44	(0.408,0.44]	chr16	629654	67	INTRON	INTRON	RANBP10	ENSG00000141084.12	ENST00000317506.8:ENST00000448631.6:ENST00000602506.5:ENST00000602677.5:ENST00000602525.5:ENST00000602638.5:ENST00000602815.5:ENST00000602887.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	47	2	4.95817	5.10042	5.24267	0.00372419	4.83767e-4	0.0535094	0.0199261
chr11	12966111	12966211	4915833	0	-	0.44	(0.408,0.44]	chr11	460662	5	INTRON	INTRON	LINC00958	ENSG00000251381.8	ENST00000658243.1:ENST00000527945.2	lncRNA	lncRNA	lncRNA	lncRNA	0	47	2	5.06343	5.100225	5.13702	0.00202889	0.00101725	0.04086	0.0293497
chr1	226940880	226940980	328567	0	+	0.5	(0.476,0.515]	chr1	37903	3	SS5_PROX	SS5_PROX:INTRON	COQ8A	ENSG00000163050.18	ENST00000366778.5:ENST00000366777.4:ENST00000478406.5:ENST00000489044.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	47	2	4.90761	5.100210000000001	5.29281	0.00386428	4.07635e-4	0.0542786	0.0181306
chr3	67495597	67495697	1732355	0	-	0.48	(0.476,0.515]	chr3	176555	4	SS5_PROX	SS5_PROX:INTRON	SUCLG2	ENSG00000172340.15	ENST00000493112.5:ENST00000307227.10:ENST00000460567.5:ENST00000492795.1	protein_coding	protein_coding	protein_coding	protein_coding	0	47	2	4.90761	5.100210000000001	5.29281	0.00386428	4.07635e-4	0.0542786	0.0181306
chr5	19024201	19024301	2569304	0	-	0.35	(0.32,0.35]	chr5	246196	576	INTRON	INTRON	ENSG00000249174	ENSG00000249174.1	ENST00000504827.1	lncRNA	lncRNA	lncRNA	lncRNA	0	50	2	4.76501	5.099805	5.4346	0.0114287	4.09682e-4	0.0886611	0.0181306
chr10	27146362	27146459	4586209	0	-	0.360825	(0.35,0.378]	chr10	422770	9	UTR3	UTR3:EXON_MRNA:INTRON	YME1L1	ENSG00000136758.20	ENST00000376016.8:ENST00000613434.4:ENST00000326799.7:ENST00000491542.6:ENST00000427324.5:ENST00000396296.7:ENST00000477432.1	protein_coding	protein_coding	protein_coding	protein_coding	0	50	2	4.64457	5.099785	5.555	0.012652	1.71389e-4	0.0926667	0.0113605
chr20	35061248	35061347	7332588	0	-	0.242424	[0,0.28]	chr20	746961	33	INTRON	INTRON	TRPC4AP	ENSG00000100991.12	ENST00000252015.3:ENST00000451813.6	protein_coding	protein_coding	protein_coding	protein_coding	0	53	2	4.75964	5.09966	5.43968	0.0232081	0.00113119	0.118148	0.0308465
chrX	40671262	40671360	7806107	0	-	0.397959	(0.378,0.408]	chrX	795899	41	INTRON	INTRON	MED14	ENSG00000180182.11	ENST00000324817.6	protein_coding	protein_coding	protein_coding	protein_coding	0	48	2	4.80968	5.09958	5.38948	0.00679828	2.85992e-4	0.0711802	0.0150568
chr1	212375800	212375898	633578	0	-	0.489796	(0.476,0.515]	chr1	74863	1	INTRON	INTRON	PACC1	ENSG00000065600.13	ENST00000261455.9:ENST00000535273.2:ENST00000478166.5:ENST00000467822.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	49	2	4.69918	5.0989249999999995	5.49867	0.00400966	4.28561e-4	0.057767	0.0189958
chr2	9504765	9504865	1063958	0	-	0.32	(0.28,0.32]	chr2	113477	2	SS5_PROX	SS5_PROX:INTRON	ADAM17	ENSG00000151694.14	ENST00000310823.8:ENST00000648548.1:ENST00000649227.1:ENST00000648857.1:ENST00000647979.1:ENST00000647610.1:ENST00000650116.1:ENST00000649686.1:ENST00000649068.1:ENST00000647622.1:ENST00000649972.1:ENST00000650241.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	52	2	4.66359	5.0988050000000005	5.53402	0.0193496	4.0843e-4	0.108861	0.0181306
chr6	122432220	122432319	2947658	0	+	0.262626	[0,0.28]	chr6	277511	1	UTR3	UTR3:EXON_MRNA	HSF2	ENSG00000025156.13	ENST00000452194.5:ENST00000368455.9	protein_coding	protein_coding	protein_coding	protein_coding	0	52	2	4.94561	5.098695	5.25178	0.0150263	0.0022031	0.0994339	0.0435144
chr1	35969055	35969154	71525	0	+	0.343434	(0.32,0.35]	chr1	9144	16	INTRON	INTRON	AGO3	ENSG00000126070.20	ENST00000324350.9:ENST00000397828.3:ENST00000634486.1:ENST00000373191.9:ENST00000246314.10:ENST00000491443.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	49	2	5.01917	5.098694999999999	5.17822	0.0055659	0.00115625	0.0648867	0.0313436
chr1	212052107	212052206	307505	0	+	0.323232	(0.32,0.35]	chr1	35478	43	INTRON	INTRON	DTL	ENSG00000143476.18	ENST00000542077.5:ENST00000366991.5:ENST00000475419.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	49	2	5.01917	5.098694999999999	5.17822	0.0055659	0.00115625	0.0648867	0.0313436
chr15	55369098	55369198	6181506	0	-	0.33	(0.32,0.35]	chr15	589222	34	INTRON	INTRON	CCPG1	ENSG00000260916.8	ENST00000442196.8:ENST00000310958.10:ENST00000425574.7:ENST00000568808.5:ENST00000568372.5:ENST00000569205.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	49	2	5.07629	5.09864	5.12099	0.00468114	0.00143632	0.0600108	0.0347139
chr6	156945297	156945397	3008843	0	+	0.45	(0.44,0.476]	chr6	281124	15	INTRON	INTRON	ARID1B	ENSG00000049618.24	ENST00000346085.10:ENST00000636930.2:ENST00000647938.1:ENST00000350026.10:ENST00000674298.1:ENST00000674190.1:ENST00000414678.7:ENST00000638000.1:ENST00000319584.11:ENST00000452544.2:ENST00000637887.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	47	2	4.99782	5.09831	5.1988	0.00151532	0.0013223	0.0352794	0.0333932
chr2	169803988	169804086	908045	0	+	0.459184	(0.44,0.476]	chr2	100172	26	INTRON	INTRON	SSB	ENSG00000138385.16	ENST00000422006.5:ENST00000260956.9:ENST00000417292.5:ENST00000413002.5:ENST00000461708.1:ENST00000409333.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	49	2	4.60647	5.098179999999999	5.58989	0.0102339	9.76499e-5	0.0850389	0.00830626
chr1	150365918	150366018	221714	0	+	0.32	(0.28,0.32]	chr1	25051	6	INTRON	INTRON	RPRD2	ENSG00000163125.16	ENST00000492220.1:ENST00000369068.5:ENST00000401000.8:ENST00000369067.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	148	2	3.5199	5.0977250000000005	6.67555	8.86821e-5	1.30429e-5	0.00792076	0.00286967
chr2	177318092	177318187	1276394	0	-	0.368421	(0.35,0.378]	chr2	134748	5	EXON_LNCRNA	EXON_LNCRNA:INTRON	NFE2L2:ENSG00000213963:ENSG00000280374	ENSG00000116044.16:ENSG00000213963.6:ENSG00000280374.1	ENST00000464747.5:ENST00000397057.6:ENST00000456746.5:ENST00000430416.5:ENST00000624891.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	0	48	2	5.04512	5.09764	5.15016	0.00393262	9.78549e-4	0.0548259	0.0287765
chr17	47136154	47136253	6788837	0	-	0.343434	(0.32,0.35]	chr17	669537	34	INTRON	INTRON	CDC27	ENSG00000004897.12	ENST00000066544.8:ENST00000531206.5:ENST00000533415.5:ENST00000571643.5:ENST00000527547.5:ENST00000526866.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	52	2	4.53988	5.09605	5.65222	0.0202178	1.55757e-4	0.109913	0.0106835
chr17	1830733	1830833	6545985	0	+	0.58	(0.57,1]	chr17	634926	2	INTRON	INTRON	RPA1	ENSG00000132383.12	ENST00000571058.5:ENST00000570451.5:ENST00000254719.10	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.60161	5.09604	5.59047	0.00142229	5.22506e-6	0.0340865	0.00156931
chr10	72399643	72399743	4644647	0	-	0.42	(0.408,0.44]	chr10	427373	197	INTRON	INTRON	MICU1	ENSG00000107745.20	ENST00000361114.10:ENST00000476605.7:ENST00000642044.1:ENST00000635239.1:ENST00000418483.6:ENST00000398763.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	47	2	4.99837	5.095195	5.19202	0.0016671	0.00131369	0.0369207	0.0333932
chr2	241746851	241746949	1056428	0	+	0.326531	(0.32,0.35]	chr2	112660	16	INTRON	INTRON	D2HGDH	ENSG00000180902.18	ENST00000403782.5:ENST00000436747.5:ENST00000321264.9:ENST00000400769.6:ENST00000437164.1:ENST00000454048.1:ENST00000417686.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	52	2	4.64046	5.09495	5.54944	0.00724767	9.42646e-4	0.0756327	0.0280811
chr8	108248702	108248802	4023278	0	-	0.46	(0.44,0.476]	chr8	367692	1	UTR5	UTR5:EXON_MRNA:INTRON	EIF3E	ENSG00000104408.11	ENST00000678042.1:ENST00000678773.1:ENST00000677409.1:ENST00000676892.1:ENST00000523674.2:ENST00000677674.1:ENST00000220849.10:ENST00000678937.1:ENST00000677084.1:ENST00000676706.1:ENST00000518100.6:ENST00000677040.1:ENST00000676698.1:ENST00000522352.6:ENST00000521297.2:ENST00000519030.6:ENST00000519627.2:ENST00000518345.2:ENST00000522445.6:ENST00000678334.1:ENST00000678023.1:ENST00000678797.1:ENST00000677614.1:ENST00000676642.1:ENST00000677965.1:ENST00000678901.1:ENST00000678243.1:ENST00000676663.1:ENST00000679198.1:ENST00000678004.1:ENST00000678881.1:ENST00000677272.1:ENST00000677746.1:ENST00000677447.1:ENST00000676548.1:ENST00000676487.1:ENST00000521440.6:ENST00000518442.5:ENST00000522887.1:ENST00000518634.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	374	2	4.77019	5.09488	5.41957	3.35474e-8	3.17012e-11	6.76704e-5	6.22689e-7
chr1	84499595	84499692	495953	0	-	0.309278	(0.28,0.32]	chr1	58754	14	UTR3	UTR3:EXON_MRNA:INTRON	GNG5	ENSG00000174021.12	ENST00000689285.1:ENST00000370645.9:ENST00000487806.5:ENST00000370641.3:ENST00000686161.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	50	2	5.04579	5.0946	5.14341	0.00714672	0.00185891	0.0723634	0.039946
chr17	42267517	42267617	6772136	0	-	0.18	[0,0.28]	chr17	666964	350	INTRON	INTRON	STAT5B	ENSG00000173757.10	ENST00000293328.8:ENST00000468312.1:ENST00000415845.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	55	2	4.63523	5.0943950000000005	5.55356	0.0139836	0.00278704	0.10247	0.0469265
chr1	45592739	45592836	93287	0	+	0.587629	(0.57,1]	chr1	12572	11	INTRON	INTRON	NASP	ENSG00000132780.17	ENST00000437901.6:ENST00000537798.5:ENST00000437362.6:ENST00000350030.8:ENST00000464190.6:ENST00000527359.5:ENST00000528084.5:ENST00000453748.5:ENST00000525515.5:ENST00000527470.5:ENST00000529333.5:ENST00000531532.5:ENST00000530840.5:ENST00000528238.5:ENST00000534101.1:ENST00000470768.5:ENST00000372052.8:ENST00000351223.7:ENST00000629893.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	39	2	4.56365	5.0942799999999995	5.62491	0.00129848	6.73465e-6	0.0333764	0.00194394
chr15	68793747	68793847	6214705	0	-	0.45	(0.44,0.476]	chr15	593024	16	INTRON	INTRON	ANP32A	ENSG00000140350.15	ENST00000465139.6:ENST00000409628.6:ENST00000267918.9:ENST00000560303.1:ENST00000495420.5:ENST00000495764.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	96	2	4.0651	5.094165	6.12323	5.16491e-5	2.60698e-5	0.00585477	0.0042231
chr1	161168576	161168676	234084	0	+	0.42	(0.408,0.44]	chr1	28074	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PPOX	ENSG00000143224.18	ENST00000352210.9:ENST00000367999.9:ENST00000497522.5:ENST00000470607.5:ENST00000651150.1:ENST00000539753.5:ENST00000652182.1:ENST00000652473.1:ENST00000544598.5:ENST00000495483.5:ENST00000535223.5:ENST00000462866.5:ENST00000652103.1:ENST00000650741.1:ENST00000652297.1:ENST00000494216.1:ENST00000462977.1:ENST00000460611.1:ENST00000537523.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	49	2	4.7041	5.09413	5.48416	0.00381677	5.43528e-4	0.0562562	0.0215026
chr12	19524432	19524532	5092015	0	+	0.47	(0.44,0.476]	chr12	481018	23	INTRON	INTRON	AEBP2	ENSG00000139154.16	ENST00000512223.6:ENST00000398731.3	protein_coding	protein_coding	protein_coding	protein_coding	0	51	2	4.53034	5.093835	5.65733	0.00672609	2.3957e-4	0.0738715	0.0142132
chr1	12349233	12349303	29469	0	+	0.5	(0.476,0.515]	chr1	3628	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	VPS13D	ENSG00000048707.15	ENST00000620676.6:ENST00000613099.4:ENST00000011700.10:ENST00000646917.1:ENST00000460333.5:ENST00000469054.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	48	2	4.6932	5.09377	5.49434	0.00753088	1.62782e-4	0.074841	0.0109774
chr17	62515804	62515903	6653252	0	+	0.262626	[0,0.28]	chr17	649320	69	INTRON	INTRON	TLK2	ENSG00000146872.19	ENST00000582809.5:ENST00000684213.1:ENST00000583843.5:ENST00000579450.5:ENST00000582195.6:ENST00000682085.1:ENST00000580705.5:ENST00000346027.10:ENST00000326270.13:ENST00000682203.1:ENST00000343388.11:ENST00000683536.1:ENST00000684440.1:ENST00000684772.1:ENST00000682274.1:ENST00000682827.1:ENST00000583690.6:ENST00000682075.1:ENST00000683104.1:ENST00000684012.1:ENST00000581041.5:ENST00000684553.1:ENST00000683737.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	52	2	4.88625	5.093675	5.3011	0.0173315	0.00185843	0.104099	0.039946
chr13	95239610	95239710	5639255	0	-	0.31	(0.28,0.32]	chr13	537157	44	INTRON	INTRON	ABCC4	ENSG00000125257.16	ENST00000645237.2:ENST00000643051.1:ENST00000643842.1:ENST00000646439.1:ENST00000643816.1:ENST00000536256.3:ENST00000643556.1:ENST00000629385.1:ENST00000642524.1:ENST00000645532.1:ENST00000644471.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	50	2	4.98872	5.09357	5.19842	0.00838468	0.00152333	0.0774402	0.0360297
chr17	30758990	30759090	6590079	0	+	0.29	(0.28,0.32]	chr17	640865	1	SS3_PROX	SS3_PROX:INTRON	SUZ12P1	ENSG00000264538.7	ENST00000578070.5:ENST00000579526.5:ENST00000690405.1:ENST00000578195.6:ENST00000582557.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	50	2	4.98872	5.09357	5.19842	0.00838468	0.00152333	0.0774402	0.0360297
chr17	59912085	59912183	6643955	0	+	0.306122	(0.28,0.32]	chr17	648809	11	INTRON	INTRON	RPS6KB1	ENSG00000108443.14	ENST00000393021.7:ENST00000472940.5:ENST00000225577.9:ENST00000477179.5:ENST00000443572.6:ENST00000489824.1:ENST00000406116.7:ENST00000592726.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	50	2	4.98872	5.09357	5.19842	0.00838468	0.00152333	0.0774402	0.0360297
chr1	212063835	212063932	307623	0	+	0.319588	(0.28,0.32]	chr1	35484	5	INTRON	INTRON	DTL	ENSG00000143476.18	ENST00000542077.5:ENST00000366991.5:ENST00000475419.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	50	2	5.08622	5.0934550000000005	5.10069	0.00610574	0.00227525	0.0676501	0.0437013
chr16	23966918	23967018	6325071	0	+	0.37	(0.35,0.378]	chr16	605705	27	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000498739.1:ENST00000647422.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	48	2	5.02832	5.092775	5.15723	0.00272706	0.00156444	0.0467523	0.0365263
chr9	136417714	136417781	4221361	0	+	0.373134	(0.35,0.378]	chr9	387539	1	SS3_PROX	SS3_PROX:INTRON	PMPCA	ENSG00000165688.12	ENST00000371717.8:ENST00000399219.7:ENST00000462616.1:ENST00000444897.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	48	2	5.02832	5.092775	5.15723	0.00272706	0.00156444	0.0467523	0.0365263
chr21	37390795	37390895	7406462	0	+	0.59	(0.57,1]	chr21	754850	153	INTRON	INTRON	DYRK1A	ENSG00000157540.22	ENST00000646523.1:ENST00000647425.1:ENST00000647188.2:ENST00000647504.1:ENST00000644942.1:ENST00000338785.8:ENST00000643624.1:ENST00000643551.1:ENST00000426672.6:ENST00000398960.7	protein_coding	protein_coding	protein_coding	protein_coding	2	84	2	3.93336	5.09261	6.25186	1.31607e-6	7.04531e-8	6.75311e-4	1.11989e-4
chr14	91476465	91476524	5955839	0	-	0.355932	(0.35,0.378]	chr14	565458	2	CDS	CDS:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PPP4R3A	ENSG00000100796.18	ENST00000554943.6:ENST00000554684.5:ENST00000555462.5:ENST00000554308.5:ENST00000554390.5:ENST00000555029.5:ENST00000554574.1:ENST00000555470.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:non_stop_decay:nonsense_mediated_decay	0	49	2	4.71953	5.091735	5.46394	0.0103314	2.60035e-4	0.0850389	0.014326
chr16	16031908	16032008	6308585	0	+	0.33	(0.32,0.35]	chr16	603534	149	INTRON	INTRON	ABCC1	ENSG00000103222.20	ENST00000574224.2:ENST00000678422.1:ENST00000677164.1:ENST00000399408.7:ENST00000572882.3:ENST00000399410.8:ENST00000679043.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	49	2	4.99922	5.091685	5.18415	0.00333629	0.00223907	0.0512081	0.0435144
chr15	70094131	70094231	6215468	0	-	0.34	(0.32,0.35]	chr15	593116	2	SS5_PROX	SS5_PROX:INTRON	TLE3	ENSG00000140332.18	ENST00000558939.5:ENST00000451782.7:ENST00000317509.12:ENST00000557919.5:ENST00000560525.6:ENST00000559929.5:ENST00000560589.5:ENST00000561453.5:ENST00000557997.5:ENST00000560939.5:ENST00000559048.5:ENST00000440567.7:ENST00000558201.5:ENST00000654081.1:ENST00000559191.5:ENST00000557907.5:ENST00000558379.5:ENST00000557984.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	105	2	4.21597	5.091415	5.96686	1.77352e-4	3.16804e-5	0.0121697	0.00449886
chr1	246328129	246328226	678923	0	-	0.453608	(0.44,0.476]	chr1	79753	4	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000453676.5:ENST00000462422.5:ENST00000403792.7:ENST00000470863.1:ENST00000455277.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	47	2	4.83202	5.09117	5.35032	0.00525002	3.02713e-4	0.0633615	0.0155054
chr1	51762667	51762765	100871	0	+	0.285714	(0.28,0.32]	chr1	13345	3	INTRON	INTRON	OSBPL9	ENSG00000117859.19	ENST00000371714.5:ENST00000428468.6:ENST00000447887.5:ENST00000495776.5:ENST00000435274.6:ENST00000453295.5:ENST00000489990.5:ENST00000532975.5:ENST00000531828.5:ENST00000361556.9:ENST00000526917.5:ENST00000462759.5:ENST00000486942.5:ENST00000528603.5:ENST00000475697.5:ENST00000531061.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	50	2	4.92929	5.09035	5.25141	0.0098607	0.00125199	0.0838128	0.0328543
chr4	80019971	80020070	2170013	0	-	0.30303	(0.28,0.32]	chr4	213885	6	INTRON	INTRON	ANTXR2	ENSG00000163297.18	ENST00000403729.7:ENST00000449651.5:ENST00000679571.1:ENST00000681710.1:ENST00000680913.1:ENST00000681115.1:ENST00000404191.5:ENST00000346652.10:ENST00000307333.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	51	2	4.73474	5.090285	5.44583	0.0162835	5.8721e-4	0.101453	0.0220073
chr2	131301557	131301654	866404	0	+	0.298969	(0.28,0.32]	chr2	97318	19	INTRON	INTRON	PLEKHB2:FAR2P4	ENSG00000115762.17:ENSG00000231431.7	ENST00000404460.5:ENST00000425399.1	protein_coding	protein_coding	protein_coding:transcribed_unprocessed_pseudogene	protein_coding:transcribed_unprocessed_pseudogene	0	50	2	5.02666	5.09012	5.15358	0.0052282	0.0027935	0.0633615	0.0488769
chr20	35407449	35407548	7335164	0	-	0.282828	(0.28,0.32]	chr20	747197	129	INTRON	INTRON	UQCC1	ENSG00000101019.22	ENST00000374380.6:ENST00000374394.7:ENST00000374384.6:ENST00000359226.6:ENST00000349714.9:ENST00000457259.5:ENST00000374385.10:ENST00000453855.5:ENST00000424405.5:ENST00000443429.5:ENST00000438533.5:ENST00000397554.5:ENST00000491125.5:ENST00000491040.5:ENST00000397553.6:ENST00000495752.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	51	2	4.83165	5.08965	5.34765	0.00527257	0.00287138	0.0656295	0.0474836
chr4	78809268	78809368	1981714	0	+	0.31	(0.28,0.32]	chr4	198463	322	INTRON	INTRON	BMP2K	ENSG00000138756.19	ENST00000389010.7:ENST00000502613.3:ENST00000502871.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	51	2	4.83165	5.08965	5.34765	0.00527257	0.00287138	0.0656295	0.0474836
chr2	55233833	55233917	781606	0	+	0.488095	(0.476,0.515]	chr2	87986	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPS27A	ENSG00000143947.15	ENST00000402285.7:ENST00000449323.5:ENST00000404735.1:ENST00000272317.11:ENST00000478196.6:ENST00000495843.1:ENST00000468810.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	54	2	4.32915	5.089175	5.8492	0.0124637	8.94204e-5	0.0973643	0.00844245
chr7	27820337	27820437	3294169	0	+	0.39	(0.378,0.408]	chr7	306038	29	INTRON	INTRON	TAX1BP1	ENSG00000106052.14	ENST00000543117.5:ENST00000433216.6:ENST00000265393.10:ENST00000409980.5:ENST00000416801.6:ENST00000396319.7:ENST00000457186.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	47	2	5.00459	5.0887	5.17281	0.00371142	7.27294e-4	0.0535094	0.0245647
chr3	172141439	172141539	1560568	0	+	0.39	(0.378,0.408]	chr3	161547	75	INTRON	INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000421757.5:ENST00000469491.5:ENST00000336824.8:ENST00000423424.5:ENST00000416957.5:ENST00000478016.1:ENST00000443501.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	48	2	4.73839	5.088655	5.43892	0.00837252	2.28412e-4	0.0774402	0.0133228
chr5	178784725	178784822	2779319	0	-	0.381443	(0.378,0.408]	chr5	262246	20	INTRON	INTRON	AACSP1	ENSG00000250420.8	ENST00000503486.6:ENST00000521412.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	47	2	5.06412	5.088635	5.11315	0.0030522	9.26795e-4	0.0493883	0.0278442
chr8	52658540	52658624	3950534	0	-	0.380952	(0.378,0.408]	chr8	362320	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RB1CC1	ENSG00000023287.13	ENST00000025008.10:ENST00000435644.6:ENST00000521611.1:ENST00000523594.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	47	2	5.06412	5.088635	5.11315	0.0030522	9.26795e-4	0.0493883	0.0278442
chr17	19112250	19112334	6740859	0	-	0.52381	(0.515,0.57]	chr17	661757	4	EXON_LNCRNA	EXON_LNCRNA	ENSG00000262202	ENSG00000262202.4	ENST00000573866.2	lncRNA	lncRNA	lncRNA	lncRNA	6	461	2	4.98425	5.08849	5.19273	1.36248e-8	3.79385e-12	3.96402e-5	1.09052e-7
chr2	130368632	130368720	864005	0	+	0.397727	(0.378,0.408]	chr2	97029	1	SS3_PROX	SS3_PROX:INTRON	PTPN18	ENSG00000072135.13	ENST00000347849.7:ENST00000489215.5:ENST00000175756.10:ENST00000428843.5:ENST00000483617.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	48	2	4.84627	5.087975	5.32968	0.00254319	0.00119786	0.0465056	0.0315806
chr11	5424356	5424456	4897463	0	-	0.44	(0.408,0.44]	chr11	459187	771	INTRON	INTRON	HBG2:ENSG00000239920:HBE1:OR51B5	ENSG00000196565.15:ENSG00000239920.2:ENSG00000213931.7:ENSG00000167355.8	ENST00000380252.6:ENST00000380259.7:ENST00000292896.3:ENST00000380237.5:ENST00000420726.6:ENST00000420465.6:ENST00000415970.6:ENST00000418729.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:nonsense_mediated_decay:processed_transcript	0	47	2	4.93024	5.087625	5.24501	0.00170369	0.00137378	0.0381936	0.0336718
chr3	141564957	141565056	1525432	0	+	0.434343	(0.408,0.44]	chr3	158870	46	INTRON	INTRON	RASA2	ENSG00000155903.14	ENST00000286364.9	protein_coding	protein_coding	protein_coding	protein_coding	0	47	2	4.93024	5.087625	5.24501	0.00170369	0.00137378	0.0381936	0.0336718
chr7	64799967	64800067	3320400	0	+	0.34	(0.32,0.35]	chr7	308703	50	INTRON	INTRON	ZNF138	ENSG00000197008.10	ENST00000359735.7:ENST00000440155.6:ENST00000494380.5:ENST00000307355.12:ENST00000437743.1:ENST00000440598.2:ENST00000430838.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	50	2	4.6938	5.087315	5.48083	0.0137794	3.35843e-4	0.0949306	0.0162819
chr11	19131595	19131695	4750229	0	+	0.37	(0.35,0.378]	chr11	439833	129	INTRON	INTRON	ZDHHC13	ENSG00000177054.14	ENST00000532026.5:ENST00000399351.7:ENST00000525490.5:ENST00000446113.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	48	2	4.8587	5.08713	5.31556	0.00695662	4.97087e-4	0.0718189	0.0201536
chr13	52470041	52470141	5504205	0	+	0.26	[0,0.28]	chr13	526676	13	INTRON	INTRON	CKAP2	ENSG00000136108.15	ENST00000378037.9:ENST00000258607.10:ENST00000490903.5	protein_coding	protein_coding	protein_coding	protein_coding	0	57	2	4.38387	5.086895	5.78992	0.0501911	2.85302e-4	0.156383	0.0150568
chr7	77743424	77743524	3343540	0	+	0.22	[0,0.28]	chr7	311438	65	INTRON	INTRON	RSBN1L	ENSG00000187257.16	ENST00000334955.13:ENST00000445288.5	protein_coding	protein_coding	protein_coding	protein_coding	0	52	2	4.82433	5.08656	5.34879	0.0200334	0.00157139	0.109608	0.0365659
chr13	45340359	45340447	5585186	0	-	0.488636	(0.476,0.515]	chr13	533749	3	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TPT1	ENSG00000133112.17	ENST00000616577.4:ENST00000530705.6:ENST00000379056.5:ENST00000529421.5:ENST00000490277.1:ENST00000379060.8:ENST00000379055.5:ENST00000309246.9:ENST00000527226.2:ENST00000442760.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	97	2	3.85485	5.086175	6.3175	1.63076e-4	8.0696e-6	0.0109774	0.00214775
chr3	50020910	50021010	1423769	0	+	0.28	[0,0.28]	chr3	149994	210	INTRON	INTRON	RBM6	ENSG00000004534.15	ENST00000442092.5:ENST00000443081.5:ENST00000419610.5:ENST00000441115.5:ENST00000422955.5:ENST00000454079.5:ENST00000266022.9:ENST00000425608.5:ENST00000434592.5:ENST00000464013.5:ENST00000483350.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	52	2	4.91414	5.086145	5.25815	0.0066548	0.0064519	0.0730725	0.0703807
chr2	172558949	172559049	919927	0	+	0.57	(0.515,0.57]	chr2	101329	1	SS5_PROX	SS5_PROX:INTRON	PDK1	ENSG00000152256.14	ENST00000443353.5:ENST00000436490.5:ENST00000392571.6:ENST00000410055.5:ENST00000282077.8:ENST00000431718.5:ENST00000416991.5:ENST00000439519.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	44	2	5.04225	5.0859950000000005	5.12974	0.00131841	4.54392e-4	0.0331539	0.0192381
chr21	7439028	7439128	7365693	0	+	0.29	(0.28,0.32]	chr21	751728	78	INTRON	INTRON	ENSG00000276077	ENSG00000276077.4	ENST00000617062.4:ENST00000625096.3:ENST00000624791.1:ENST00000624907.3:ENST00000624461.3:ENST00000625115.1	lncRNA	lncRNA	lncRNA	lncRNA	0	50	2	4.86731	5.08492	5.30253	0.0116253	0.0010319	0.0889104	0.0294094
chr3	143990229	143990326	1529942	0	+	0.319588	(0.28,0.32]	chr3	159523	5	UTR3	UTR3:EXON_MRNA:INTRON	DIPK2A	ENSG00000181744.9	ENST00000315691.8:ENST00000493396.1:ENST00000495414.5:ENST00000441925.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	177	2	3.50996	5.083655	6.65735	1.72961e-5	1.42548e-5	0.00316166	0.003011
chr12	122049727	122049826	5239677	0	+	0.585859	(0.57,1]	chr12	497461	53	INTRON	INTRON	BCL7A	ENSG00000110987.9	ENST00000538010.5:ENST00000261822.5	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.96336	5.082755	5.20215	2.05554e-4	8.28896e-5	0.0124557	0.00812487
chr21	43801381	43801479	7413741	0	+	0.561224	(0.515,0.57]	chr21	755659	1	INTRON	INTRON	RRP1	ENSG00000160214.13	ENST00000497547.2:ENST00000467112.5:ENST00000471909.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	47	2	4.5963	5.082685	5.56907	0.00370287	1.36543e-4	0.0561162	0.0106702
chr1	203808011	203808111	296804	0	+	0.32	(0.28,0.32]	chr1	34134	46	INTRON	INTRON	ZC3H11A:ZBED6	ENSG00000058673.17:ENSG00000257315.3	ENST00000367210.3:ENST00000453771.5:ENST00000432282.5:ENST00000638800.1:ENST00000367214.5:ENST00000639812.1:ENST00000367212.7:ENST00000332127.8:ENST00000550078.2:ENST00000495527.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	52	2	4.58875	5.08246	5.57617	0.0230574	3.41866e-4	0.118056	0.0164909
chr15	72717946	72718045	6060797	0	+	0.515152	(0.476,0.515]	chr15	576994	7	INTRON	INTRON	BBS4	ENSG00000140463.14	ENST00000395205.6:ENST00000566400.5:ENST00000565160.5:ENST00000561914.5:ENST00000268057.9:ENST00000567279.5:ENST00000566938.5:ENST00000569440.5:ENST00000563600.5:ENST00000562084.5:ENST00000569338.5:ENST00000564239.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	47	2	4.85379	5.082185	5.31058	0.00234214	9.15544e-4	0.0442989	0.0278396
chr1	66954683	66954782	139740	0	+	0.40404	(0.378,0.408]	chr1	15662	66	INTRON	INTRON	MIER1	ENSG00000198160.15	ENST00000355977.10:ENST00000371018.7:ENST00000357692.6:ENST00000371016.5:ENST00000371014.5:ENST00000401041.6:ENST00000355356.3:ENST00000401042.7:ENST00000479067.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	47	2	4.87762	5.081415	5.28521	0.00553849	4.52877e-4	0.0648867	0.0192381
chr13	112564610	112564710	5651484	0	-	0.38	(0.378,0.408]	chr13	538525	1	SS5_PROX	SS5_PROX:INTRON	TUBGCP3	ENSG00000126216.15	ENST00000261965.8:ENST00000649778.1:ENST00000375669.7:ENST00000464139.5:ENST00000483532.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	47	2	4.87762	5.081415	5.28521	0.00553849	4.52877e-4	0.0648867	0.0192381
chr3	101730197	101730292	1468971	0	+	0.378947	(0.378,0.408]	chr3	154001	9	INTRON	INTRON	CEP97	ENSG00000182504.11	ENST00000489172.5:ENST00000341893.8:ENST00000494050.5:ENST00000465011.1:ENST00000467655.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	47	2	4.87762	5.081415	5.28521	0.00553849	4.52877e-4	0.0648867	0.0192381
chr10	125832495	125832592	4536105	0	+	0.381443	(0.378,0.408]	chr10	418750	5	INTRON	INTRON	BCCIP	ENSG00000107949.17	ENST00000368759.5:ENST00000299130.7:ENST00000278100.11	protein_coding	protein_coding	protein_coding	protein_coding	0	47	2	4.98587	5.08107	5.17627	0.00208234	0.00152268	0.0411801	0.0360297
chr6	31535585	31535685	3078774	0	-	0.38	(0.378,0.408]	chr6	286744	1	SS3_PROX	SS3_PROX:INTRON	DDX39B	ENSG00000198563.14	ENST00000458640.5:ENST00000462256.5:ENST00000376177.6:ENST00000396172.6:ENST00000482195.5:ENST00000431908.5:ENST00000481456.1:ENST00000427214.5:ENST00000428098.5:ENST00000419338.5:ENST00000456662.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	47	2	4.98587	5.08107	5.17627	0.00208234	0.00152268	0.0411801	0.0360297
chr6	163493092	163493192	3032496	0	+	0.34	(0.32,0.35]	chr6	282586	138	INTRON	INTRON	QKI	ENSG00000112531.17	ENST00000361758.8:ENST00000453779.6:ENST00000275262.11:ENST00000392127.6:ENST00000361752.8:ENST00000361195.6:ENST00000424802.7:ENST00000545607.5:ENST00000544436.5:ENST00000537041.5:ENST00000545346.1:ENST00000544823.5:ENST00000537883.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	105	2	4.28787	5.080575	5.87328	2.6344e-4	2.11436e-5	0.0149561	0.00355554
chr3	75761736	75761836	1748144	0	-	0.52	(0.515,0.57]	chr3	177549	195	INTRON	INTRON	ZNF717	ENSG00000227124.11	ENST00000648506.1:ENST00000491507.1:ENST00000477374.5:ENST00000652011.2:ENST00000478296.5:ENST00000471541.2:ENST00000468296.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	44	2	4.99635	5.08024	5.16413	8.14815e-4	8.06602e-4	0.0263656	0.0258804
chr7	72912166	72912266	3330120	0	+	0.53	(0.515,0.57]	chr7	309565	207	INTRON	INTRON	POM121	ENSG00000196313.13	ENST00000627934.3:ENST00000395270.5	protein_coding	protein_coding	protein_coding	protein_coding	0	44	2	4.99635	5.08024	5.16413	8.14815e-4	8.06602e-4	0.0263656	0.0258804
chr9	136457243	136457343	4374762	0	-	0.53	(0.515,0.57]	chr9	403012	4	SS5_PROX	SS5_PROX:INTRON	SEC16A	ENSG00000148396.19	ENST00000290037.10:ENST00000313050.11:ENST00000371706.8:ENST00000453963.5:ENST00000277537.10:ENST00000684901.1:ENST00000690691.1:ENST00000431893.3	protein_coding	protein_coding	protein_coding	protein_coding	0	44	2	4.99635	5.08024	5.16413	8.14815e-4	8.06602e-4	0.0263656	0.0258804
chr6	137201607	137201706	3235687	0	-	0.424242	(0.408,0.44]	chr6	300718	2	INTRON	INTRON	IFNGR1	ENSG00000027697.16	ENST00000458076.6:ENST00000696695.1:ENST00000367739.9:ENST00000696694.1:ENST00000645045.1:ENST00000643119.1:ENST00000696693.1:ENST00000414770.6:ENST00000696696.1:ENST00000644894.1:ENST00000646898.1:ENST00000646036.1:ENST00000645753.1:ENST00000642390.1:ENST00000647124.1:ENST00000696697.1:ENST00000696698.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	130	2	4.04326	5.079815	6.11637	3.037e-5	1.92737e-6	0.00456454	8.42956e-4
chr17	44925785	44925883	6781569	0	-	0.316327	(0.28,0.32]	chr17	668898	12	UTR3	UTR3:EXON_MRNA	KIF18B	ENSG00000186185.14	ENST00000587309.5:ENST00000593135.6	protein_coding	protein_coding	protein_coding	protein_coding	4	204	2	2.87294	5.079330000000001	7.28572	2.13258e-4	5.34659e-7	0.0128205	4.25917e-4
chr6	107931711	107931811	3182582	0	-	0.37	(0.35,0.378]	chr6	296463	18	INTRON	INTRON	SEC63	ENSG00000025796.14	ENST00000369002.9:ENST00000429168.1:ENST00000484803.5:ENST00000446496.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	48	2	4.79079	5.07876	5.3667299999999996	0.00846427	3.99274e-4	0.0776969	0.0179401
chr7	72919299	72919394	3330192	0	+	0.284211	(0.28,0.32]	chr7	309572	2	EXON_LNCRNA	EXON_LNCRNA:INTRON	POM121:ENSG00000289042	ENSG00000196313.13:ENSG00000289042.1	ENST00000627934.3:ENST00000395270.5:ENST00000689827.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	1	109	2	3.89776	5.078475	6.25919	2.03846e-4	9.00783e-5	0.0124395	0.00844245
chr1	19162238	19162319	386315	0	-	0.493827	(0.476,0.515]	chr1	45971	4	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	UBR4	ENSG00000127481.15	ENST00000375254.8:ENST00000417040.1:ENST00000419533.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	95	2	4.08391	5.078435000000001	6.07296	4.74551e-5	2.96173e-5	0.00562068	0.00451038
chr3	5170848	5170937	1354063	0	+	0.438202	(0.408,0.44]	chr3	142366	4	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	ARL8B	ENSG00000134108.14	ENST00000429403.5:ENST00000256496.8:ENST00000455168.5:ENST00000444332.1:ENST00000419534.2:ENST00000468010.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	47	2	4.75398	5.07803	5.40208	0.00703931	2.37882e-4	0.0718189	0.0136195
chr4	159127006	159127106	2073739	0	+	0.43	(0.408,0.44]	chr4	205172	224	INTRON	INTRON	RAPGEF2	ENSG00000109756.10	ENST00000644474.1:ENST00000691494.1:ENST00000505478.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	96	2	4.32093	5.077775	5.83462	1.18776e-4	1.15245e-5	0.00987467	0.00250519
chr7	2732550	2732650	3468328	0	-	0.44	(0.408,0.44]	chr7	324319	4	INTRON	INTRON	GNA12	ENSG00000146535.14	ENST00000275364.8:ENST00000407904.7:ENST00000491117.5:ENST00000407653.1:ENST00000496740.6:ENST00000471281.5:ENST00000485329.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	47	2	4.85872	5.07742	5.29612	0.00221911	0.00113523	0.0435144	0.0307488
chr8	42040385	42040485	3941190	0	-	0.42	(0.408,0.44]	chr8	361223	525	INTRON	INTRON	KAT6A	ENSG00000083168.11	ENST00000406337.6:ENST00000265713.8:ENST00000396930.4:ENST00000648335.1:ENST00000649827.1:ENST00000485568.5:ENST00000647809.1:ENST00000648030.1:ENST00000650356.1:ENST00000470574.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	47	2	4.85872	5.07742	5.29612	0.00221911	0.00113523	0.0435144	0.0307488
chr4	79219060	79219159	1985618	0	+	0.252525	[0,0.28]	chr4	198605	69	INTRON	INTRON	LINC01088	ENSG00000249307.8	ENST00000671503.1:ENST00000509088.6:ENST00000658852.1:ENST00000651041.1:ENST00000510667.5:ENST00000513153.5:ENST00000515597.1:ENST00000507761.1:ENST00000507476.5:ENST00000512130.5:ENST00000653314.1:ENST00000692734.1:ENST00000437737.3:ENST00000511895.1	lncRNA	lncRNA	lncRNA	lncRNA	0	52	2	4.75964	5.0772949999999994	5.39495	0.0232081	0.00133175	0.118148	0.0335129
chr15	58708079	58708179	6193098	0	-	0.29	(0.28,0.32]	chr15	589982	3	INTRON	INTRON	ADAM10	ENSG00000137845.15	ENST00000260408.8:ENST00000402627.5:ENST00000561288.1:ENST00000559053.1:ENST00000558733.5:ENST00000439637.5:ENST00000497846.5:ENST00000558004.1:ENST00000560608.5:ENST00000561149.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	51	2	4.66359	5.077095	5.4906	0.0193496	4.89126e-4	0.108861	0.0199693
chr7	92131872	92131972	3568989	0	-	0.29	(0.28,0.32]	chr7	332487	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	CYP51A1:ENSG00000289027	ENSG00000001630.18:ENSG00000289027.1	ENST00000691309.1:ENST00000003100.13:ENST00000692281.1:ENST00000693096.1:ENST00000450723.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	51	2	4.66359	5.077095	5.4906	0.0193496	4.89126e-4	0.108861	0.0199693
chr3	172168855	172168955	1560843	0	+	0.51	(0.476,0.515]	chr3	161551	199	INTRON	INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000421757.5:ENST00000469491.5:ENST00000336824.8:ENST00000423424.5:ENST00000416957.5:ENST00000478016.1:ENST00000443501.1:ENST00000476794.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	95	2	4.17194	5.0766100000000005	5.98128	4.70386e-5	2.87271e-5	0.00593131	0.00424646
chr1	147084685	147084756	542184	0	-	0.43662	(0.408,0.44]	chr1	63572	2	EXON_SMALL	EXON_SMALL	RNVU1-8	ENSG00000286172.1	ENST00000651973.1	snRNA	snRNA	snRNA	snRNA	6	449	2	3.67917	5.076255	6.47334	1.99231e-7	8.41949e-12	2.09496e-4	1.93611e-7
chr6	166329506	166329589	3262987	0	-	0.518072	(0.515,0.57]	chr6	302934	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SFT2D1	ENSG00000198818.10	ENST00000361731.4:ENST00000487841.5:ENST00000478705.5:ENST00000488773.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	175	2	3.31598	5.07621	6.83644	1.97806e-6	7.47542e-8	8.55184e-4	1.1615e-4
chr12	122612047	122612141	5241500	0	+	0.425532	(0.408,0.44]	chr12	497859	4	INTRON	INTRON	KNTC1	ENSG00000184445.12	ENST00000450485.6:ENST00000333479.12:ENST00000436959.7:ENST00000546125.1:ENST00000542727.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	102	2	3.9868	5.0761	6.1654	1.3698e-4	4.10908e-6	0.0106749	0.001347
chr1	220162841	220162936	639697	0	-	0.2	[0,0.28]	chr1	75437	7	EXON_MRNA	EXON_MRNA:INTRON	RAB3GAP2	ENSG00000118873.17	ENST00000358951.7:ENST00000687065.1:ENST00000686381.1:ENST00000687647.1:ENST00000692972.1:ENST00000690315.1:ENST00000691862.1:ENST00000691661.1:ENST00000690373.1:ENST00000693602.1:ENST00000692813.1:ENST00000685286.1:ENST00000688035.1:ENST00000474966.2:ENST00000685664.1:ENST00000690824.1:ENST00000687394.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	54	2	4.5461	5.076005	5.60591	0.0365918	6.01442e-4	0.138959	0.0223465
chr2	131078995	131079095	1228947	0	-	0.28	[0,0.28]	chr2	130987	67	INTRON	INTRON	FAM168B	ENSG00000152102.18	ENST00000389915.4:ENST00000409185.5	protein_coding	protein_coding	protein_coding	protein_coding	0	54	2	4.5461	5.076005	5.60591	0.0365918	6.01442e-4	0.138959	0.0223465
chr1	28279835	28279930	55728	0	+	0.515789	(0.515,0.57]	chr1	7236	2	INTRON	INTRON	SESN2	ENSG00000130766.5	ENST00000253063.4	protein_coding	protein_coding	protein_coding	protein_coding	0	45	2	4.6831	5.075955	5.46881	0.00471288	9.03271e-5	0.0600108	0.00795396
chr16	58571916	58572016	6495783	0	-	0.45	(0.44,0.476]	chr16	628558	112	INTRON	INTRON	CNOT1	ENSG00000125107.19	ENST00000317147.10:ENST00000569240.5:ENST00000567188.5:ENST00000441024.6:ENST00000569882.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	102	2	3.71735	5.075865	6.43438	4.72844e-4	7.64184e-7	0.0201458	4.90537e-4
chr8	104565236	104565336	4014484	0	-	0.33	(0.32,0.35]	chr8	367439	329	INTRON	INTRON	LRP12	ENSG00000147650.12	ENST00000424843.6:ENST00000276654.10:ENST00000520770.1:ENST00000519675.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	51	2	4.53988	5.075559999999999	5.61124	0.0202178	1.88018e-4	0.109913	0.011951
chr6	4898964	4899064	2792090	0	+	0.35	(0.32,0.35]	chr6	263614	62	INTRON	INTRON	CDYL	ENSG00000153046.18	ENST00000328908.9:ENST00000440139.5:ENST00000397588.8:ENST00000472453.5:ENST00000449732.6:ENST00000343762.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	49	2	4.86622	5.07536	5.2845	0.00354075	0.00240071	0.0546236	0.0440612
chr1	100427388	100427488	173380	0	+	0.27	[0,0.28]	chr1	18830	27	INTRON	INTRON	CDC14A	ENSG00000079335.20	ENST00000646665.1:ENST00000644844.1:ENST00000635056.2:ENST00000647005.1:ENST00000647203.1:ENST00000644676.1:ENST00000361544.11:ENST00000370124.8:ENST00000336454.5:ENST00000644813.1:ENST00000455467.6:ENST00000646563.1:ENST00000469387.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	51	2	5.00263	5.075200000000001	5.14777	0.013055	0.00311898	0.093385	0.0512673
chr14	49655570	49655670	5886171	0	-	0.23	[0,0.28]	chr14	558569	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	POLE2	ENSG00000100479.13	ENST00000216367.10:ENST00000539565.6:ENST00000556584.5:ENST00000554396.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	51	2	5.00263	5.075200000000001	5.14777	0.013055	0.00311898	0.093385	0.0512673
chrX	44947683	44947783	7649347	0	+	0.28	[0,0.28]	chrX	782726	733	INTRON	INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000675440.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000621147.5:ENST00000475233.1:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	51	2	5.05748	5.075145	5.09281	0.0113653	0.00372534	0.0886611	0.0561984
chr15	85132449	85132548	6090468	0	+	0.434343	(0.408,0.44]	chr15	579620	57	INTRON	INTRON	PDE8A	ENSG00000073417.15	ENST00000310298.8:ENST00000557957.5:ENST00000394553.6:ENST00000339708.9:ENST00000478717.5:ENST00000485596.5:ENST00000559742.5:ENST00000560789.5:ENST00000561024.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	49	2	4.51604	5.07499	5.63394	0.0137419	7.78928e-5	0.0949306	0.00735438
chr3	5124380	5124479	1353594	0	+	0.343434	(0.32,0.35]	chr3	142354	14	INTRON	INTRON	ARL8B	ENSG00000134108.14	ENST00000429403.5:ENST00000256496.8:ENST00000455168.5:ENST00000444332.1:ENST00000419534.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	108	2	4.48428	5.07497	5.66566	6.06695e-4	6.69334e-6	0.0226059	0.00183039
chr11	119114950	119115048	4874669	0	+	0.459184	(0.44,0.476]	chr11	455619	7	EXON_MRNA	EXON_MRNA:INTRON	C2CD2L	ENSG00000172375.14	ENST00000648610.2:ENST00000336702.7:ENST00000525598.1:ENST00000528586.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	48	2	4.70355	5.0748750000000005	5.4462	0.00383786	5.83686e-4	0.0562562	0.0223753
chr6	10926532	10926601	2812157	0	+	0.449275	(0.44,0.476]	chr6	264631	1	SS5_PROX	SS5_PROX:INTRON	SYCP2L	ENSG00000153157.13	ENST00000341041.8:ENST00000283141.11:ENST00000543878.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	48	2	4.70355	5.0748750000000005	5.4462	0.00383786	5.83686e-4	0.0562562	0.0223753
chr6	44429112	44429212	2873343	0	+	0.45	(0.44,0.476]	chr6	272701	20	INTRON	INTRON	CDC5L	ENSG00000096401.8	ENST00000371477.4	protein_coding	protein_coding	protein_coding	protein_coding	0	46	2	5.06288	5.074735	5.08659	0.00226401	0.00102416	0.0425438	0.0294041
chr17	22096803	22096903	6578631	0	+	0.24	[0,0.28]	chr17	639556	55	INTRON	INTRON	UBBP4	ENSG00000263563.7	ENST00000648259.1:ENST00000688301.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	2	175	2	3.19247	5.07467	6.95687	0.00107103	8.2408e-7	0.0300793	5.13545e-4
chr4	4456190	4456290	2101464	0	-	0.44	(0.408,0.44]	chr4	208129	173	INTRON	INTRON	STX18	ENSG00000168818.10	ENST00000505286.5:ENST00000306200.7:ENST00000503861.5:ENST00000512195.5:ENST00000507908.5:ENST00000512780.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	102	2	4.01292	5.074185	6.13545	1.20325e-4	4.91945e-6	0.00992311	0.00150985
chr19	9145272	9145371	7011287	0	+	0.474747	(0.44,0.476]	chr19	696234	43	INTRON	INTRON	ZNF317	ENSG00000130803.15	ENST00000247956.11:ENST00000360385.7:ENST00000591278.5:ENST00000419608.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	50	2	4.53034	5.073919999999999	5.6175	0.00672609	2.84938e-4	0.0738715	0.015495
chr1	176093972	176094072	590570	0	-	0.39	(0.378,0.408]	chr1	70920	77	INTRON	INTRON	COP1	ENSG00000143207.21	ENST00000367669.8:ENST00000367667.5:ENST00000367666.5:ENST00000649803.1:ENST00000308769.12:ENST00000459744.5:ENST00000498306.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	47	2	4.91776	5.0735	5.22924	0.00196368	0.00172721	0.0411469	0.0374701
chr7	16660119	16660219	3286635	0	+	0.38	(0.378,0.408]	chr7	305237	135	INTRON	INTRON	BZW2	ENSG00000136261.16	ENST00000415365.5:ENST00000630952.2:ENST00000433922.6:ENST00000437745.5:ENST00000432311.5:ENST00000436868.5:ENST00000258761.8:ENST00000405202.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	47	2	4.91776	5.0735	5.22924	0.00196368	0.00172721	0.0411469	0.0374701
chr1	58662660	58662755	467437	0	-	0.273684	[0,0.28]	chr1	56401	13	UTR3	UTR3:EXON_MRNA:INTRON	MYSM1	ENSG00000162601.11	ENST00000655340.1:ENST00000493821.6:ENST00000472487.6:ENST00000622766.1:ENST00000665648.1:ENST00000659812.1:ENST00000659108.1:ENST00000401044.7:ENST00000660611.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	51	2	5.03568	5.073005	5.11033	0.00991388	0.00446141	0.0838372	0.0610799
chr2	151412732	151412831	893233	0	+	0.484848	(0.476,0.515]	chr2	98878	10	INTRON	INTRON	RIF1	ENSG00000080345.18	ENST00000453091.6:ENST00000428287.6:ENST00000494333.1:ENST00000444746.7:ENST00000243326.9:ENST00000414861.6:ENST00000430328.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	46	2	4.90761	5.072649999999999	5.23769	0.00386428	5.17244e-4	0.0542786	0.0203753
chr20	3967890	3967989	7308929	0	-	0.494949	(0.476,0.515]	chr20	744293	35	INTRON	INTRON	RNF24	ENSG00000101236.17	ENST00000336095.10:ENST00000358395.11:ENST00000432261.6:ENST00000545616.2	protein_coding	protein_coding	protein_coding	protein_coding	0	46	2	4.90761	5.072649999999999	5.23769	0.00386428	5.17244e-4	0.0542786	0.0203753
chr21	44960468	44960568	7417666	0	+	0.44	(0.408,0.44]	chr21	756230	3	SS5_PROX	SS5_PROX:INTRON	SLX9	ENSG00000160256.13	ENST00000397826.7:ENST00000458015.1:ENST00000291634.11:ENST00000479127.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	46	2	4.95817	5.071765	5.18536	0.00372419	6.17381e-4	0.0535094	0.0223951
chr7	22590844	22590944	3499279	0	-	0.46	(0.44,0.476]	chr7	326644	177	INTRON	INTRON	STEAP1B	ENSG00000105889.16	ENST00000439708.1:ENST00000442252.1:ENST00000650428.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	46	2	4.9	5.071055	5.24211	0.00423315	4.87398e-4	0.0572185	0.0199652
chr7	138468499	138468599	3434723	0	+	0.3	(0.28,0.32]	chr7	319959	68	INTRON	INTRON	TRIM24	ENSG00000122779.18	ENST00000343526.9:ENST00000415680.6:ENST00000497516.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	109	2	4.20409	5.07001	5.93593	3.47635e-4	4.29699e-5	0.017378	0.00530629
chr15	43797309	43797407	6012548	0	+	0.510204	(0.476,0.515]	chr15	572720	13	UTR5	UTR5:EXON_MRNA:INTRON	SERF2:HYPK	ENSG00000140264.21:ENSG00000242028.8	ENST00000630046.2:ENST00000409646.5:ENST00000409291.5:ENST00000409617.6:ENST00000448830.2:ENST00000430901.1:ENST00000406925.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	126	2	3.79654	5.0694099999999995	6.34228	1.01833e-5	7.03585e-6	0.00233783	0.00198457
chr2	207616783	207616882	1318298	0	-	0.494949	(0.476,0.515]	chr2	138221	7	INTRON	INTRON	METTL21A	ENSG00000144401.14	ENST00000432416.5:ENST00000458426.5:ENST00000425132.5:ENST00000448007.6:ENST00000272839.7:ENST00000448823.2:ENST00000411432.6:ENST00000406927.6:ENST00000426075.5:ENST00000442521.1:ENST00000461419.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	47	2	4.77856	5.069255	5.35995	0.00305743	7.54256e-4	0.0509893	0.0251179
chr1	207778240	207778340	305173	0	+	0.35	(0.32,0.35]	chr1	35129	21	INTRON	INTRON	CD46	ENSG00000117335.21	ENST00000695779.1:ENST00000695777.1:ENST00000695778.1:ENST00000496723.2:ENST00000695782.1:ENST00000695781.1:ENST00000695780.1:ENST00000636114.2:ENST00000367042.6:ENST00000322875.8:ENST00000322918.9:ENST00000354848.5:ENST00000357714.5:ENST00000358170.6:ENST00000367041.5:ENST00000367047.5:ENST00000695783.1:ENST00000695784.1:ENST00000469535.5:ENST00000360212.6:ENST00000480003.5:ENST00000695786.1:ENST00000490278.2:ENST00000488596.5:ENST00000471987.1:ENST00000462968.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	48	2	4.95971	5.068965	5.17822	0.00663522	0.00115625	0.0703181	0.0313436
chr2	71139148	71139240	806333	0	+	0.347826	(0.32,0.35]	chr2	90080	5	UTR3	UTR3:EXON_MRNA:INTRON	MPHOSPH10	ENSG00000124383.10	ENST00000468427.2:ENST00000695482.1:ENST00000695483.1:ENST00000498451.3:ENST00000695484.1:ENST00000694907.1:ENST00000244230.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	48	2	4.95971	5.068965	5.17822	0.00663522	0.00115625	0.0703181	0.0313436
chr12	91415568	91415668	5383371	0	-	0.35	(0.32,0.35]	chr12	513479	158	INTRON	INTRON	ENSG00000289605	ENSG00000289605.1	ENST00000685093.1	lncRNA	lncRNA	lncRNA	lncRNA	0	48	2	5.06139	5.06884	5.07629	0.00468114	0.00179023	0.0600108	0.0392749
chr12	22683124	22683220	5095336	0	+	0.364583	(0.35,0.378]	chr12	481280	4	INTRON	INTRON	ETNK1	ENSG00000139163.16	ENST00000671733.1:ENST00000266517.9:ENST00000538218.2:ENST00000673406.1:ENST00000673188.1:ENST00000544191.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	47	2	4.98561	5.067885	5.15016	0.00474226	9.78549e-4	0.0600445	0.0287765
chr19	21176073	21176172	7040303	0	+	0.363636	(0.35,0.378]	chr19	701956	2	INTRON	INTRON	ZNF431	ENSG00000196705.8	ENST00000600692.5:ENST00000599296.5:ENST00000594425.5:ENST00000311048.11:ENST00000598331.1	protein_coding	protein_coding	protein_coding	protein_coding	0	47	2	4.98561	5.067885	5.15016	0.00474226	9.78549e-4	0.0600445	0.0287765
chr16	30365980	30366076	6473523	0	-	0.354167	(0.35,0.378]	chr16	625762	5	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	TBC1D10B	ENSG00000169221.14	ENST00000409939.8:ENST00000478158.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	47	2	5.04512	5.067819999999999	5.09052	0.00393262	0.00123501	0.0548259	0.0326215
chr3	48531037	48531136	1688648	0	-	0.373737	(0.35,0.378]	chr3	172531	50	INTRON	INTRON	PFKFB4	ENSG00000114268.12	ENST00000232375.8:ENST00000490115.5:ENST00000383734.6:ENST00000416568.5:ENST00000417753.5:ENST00000445633.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	47	2	5.04512	5.067819999999999	5.09052	0.00393262	0.00123501	0.0548259	0.0326215
chr20	47326459	47326559	7349209	0	-	0.43	(0.408,0.44]	chr20	749346	75	INTRON	INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000435836.5:ENST00000446894.5:ENST00000441977.1	protein_coding	protein_coding	protein_coding	protein_coding	0	46	2	4.99837	5.0676950000000005	5.13702	0.00202889	0.00131369	0.04086	0.0333932
chr8	140548321	140548418	4075673	0	-	0.412371	(0.408,0.44]	chr8	370212	3	INTRON	INTRON	AGO2	ENSG00000123908.12	ENST00000220592.10:ENST00000519980.5:ENST00000523609.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	46	2	4.99837	5.0676950000000005	5.13702	0.00202889	0.00131369	0.04086	0.0333932
chr20	17951890	17951988	7320392	0	-	0.459184	(0.44,0.476]	chr20	745302	3	SS3_PROX	SS3_PROX:INTRON	SNX5	ENSG00000089006.17	ENST00000377768.7:ENST00000490175.5:ENST00000483485.5:ENST00000377759.9:ENST00000476648.5:ENST00000431277.5:ENST00000419004.2:ENST00000494401.5:ENST00000474883.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	47	2	4.78293	5.0676000000000005	5.35227	0.00292033	8.47974e-4	0.0494641	0.0267232
chr19	51582282	51582382	7093666	0	+	0.43	(0.408,0.44]	chr19	711047	4	SS5_PROX	SS5_PROX:INTRON	ZNF175	ENSG00000105497.8	ENST00000262259.7:ENST00000436511.2:ENST00000600460.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	126	2	3.83178	5.067315000000001	6.30285	1.14977e-5	7.89896e-6	0.00268333	0.00201919
chrX	154687134	154687233	7914672	0	-	0.373737	(0.35,0.378]	chrX	806068	65	INTRON	INTRON	GAB3	ENSG00000160219.12	ENST00000496390.5:ENST00000424127.3:ENST00000369575.7:ENST00000369568.8:ENST00000475685.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	48	2	4.82377	5.067175	5.31058	0.00325499	0.00160599	0.0524329	0.0364977
chr9	124519742	124519840	4346689	0	-	0.602041	(0.57,1]	chr9	399204	26	UTR3	UTR3:EXON_MRNA	NR6A1	ENSG00000148200.17	ENST00000487099.7	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	4.67443	5.066535	5.45864	8.07515e-4	1.90577e-5	0.0258804	0.00354138
chr10	87085270	87085369	4659743	0	-	0.484848	(0.476,0.515]	chr10	429378	55	INTRON	INTRON	GLUD1	ENSG00000148672.10	ENST00000277865.5:ENST00000684699.1:ENST00000682396.1:ENST00000683022.1:ENST00000683269.1:ENST00000683256.1:ENST00000681987.1:ENST00000684032.1:ENST00000684338.1:ENST00000684201.1:ENST00000682507.1:ENST00000683783.1:ENST00000681988.1:ENST00000682622.1:ENST00000684546.1:ENST00000684372.1:ENST00000682833.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	46	2	4.83962	5.066215	5.29281	0.00480934	4.07635e-4	0.0602209	0.0181306
chr12	95160955	95161054	5392647	0	-	0.50505	(0.476,0.515]	chr12	514166	76	INTRON	INTRON	FGD6	ENSG00000180263.14	ENST00000343958.9:ENST00000451107.3:ENST00000546711.5:ENST00000549499.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	46	2	4.83962	5.066215	5.29281	0.00480934	4.07635e-4	0.0602209	0.0181306
chr17	81625455	81625554	6849493	0	-	0.30303	(0.28,0.32]	chr17	678237	28	INTRON	INTRON	NPLOC4	ENSG00000182446.14	ENST00000331134.11:ENST00000374747.9:ENST00000574897.5:ENST00000625705.1:ENST00000570300.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	49	2	4.98872	5.066065	5.14341	0.00838468	0.00185891	0.0774402	0.039946
chr2	32206585	32206685	730200	0	+	0.3	(0.28,0.32]	chr2	84215	3	SS3_PROX	SS3_PROX:INTRON	SLC30A6	ENSG00000152683.14	ENST00000357055.7:ENST00000435660.5:ENST00000282587.9:ENST00000449777.5:ENST00000454324.5:ENST00000379343.6:ENST00000406369.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	49	2	4.98872	5.066065	5.14341	0.00838468	0.00185891	0.0774402	0.039946
chr21	38117310	38117409	7464059	0	-	0.313131	(0.28,0.32]	chr21	760303	176	INTRON	INTRON	DSCR4	ENSG00000184029.9	ENST00000398948.5:ENST00000328264.7:ENST00000482032.1	lncRNA	lncRNA	lncRNA	lncRNA	0	49	2	4.98872	5.066065	5.14341	0.00838468	0.00185891	0.0774402	0.039946
chr5	146498235	146498335	2516032	0	+	0.29	(0.28,0.32]	chr5	240377	3	SS3_PROX	SS3_PROX:INTRON	TCERG1	ENSG00000113649.13	ENST00000296702.9:ENST00000679501.2:ENST00000394421.7:ENST00000549332.1:ENST00000506524.5:ENST00000505285.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	49	2	4.98872	5.066065	5.14341	0.00838468	0.00185891	0.0774402	0.039946
chr8	28969442	28969542	3725649	0	+	0.31	(0.28,0.32]	chr8	346264	52	INTRON	INTRON	HMBOX1	ENSG00000147421.18	ENST00000287701.15:ENST00000558662.5:ENST00000519662.5:ENST00000397358.7:ENST00000560599.5:ENST00000523613.5:ENST00000560357.5:ENST00000521516.5:ENST00000519047.5:ENST00000560269.1:ENST00000355231.9:ENST00000524238.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	49	2	4.98872	5.066065	5.14341	0.00838468	0.00185891	0.0774402	0.039946
chr2	197824916	197825016	969305	0	+	0.3	(0.28,0.32]	chr2	104858	142	INTRON	INTRON	PLCL1	ENSG00000115896.16	ENST00000428675.6:ENST00000435320.1:ENST00000487695.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	49	2	5.04579	5.0660050000000005	5.08622	0.00714672	0.00227525	0.0723634	0.0437013
chr3	142161423	142161523	1835492	0	-	0.3	(0.28,0.32]	chr3	184380	40	UTR3	UTR3:EXON_MRNA	GK5	ENSG00000175066.16	ENST00000392993.7	protein_coding	protein_coding	protein_coding	protein_coding	0	49	2	5.04579	5.0660050000000005	5.08622	0.00714672	0.00227525	0.0723634	0.0437013
chr18	9222399	9222499	6869797	0	+	0.25	[0,0.28]	chr18	680610	4	SS5_PROX	SS5_PROX:INTRON	ANKRD12	ENSG00000101745.17	ENST00000262126.9:ENST00000540578.6:ENST00000400020.7:ENST00000546007.6:ENST00000359158.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	52	2	4.69191	5.065795	5.43968	0.0269474	0.00113119	0.123442	0.0308465
chr6	34850623	34850723	2848989	0	+	0.37	(0.35,0.378]	chr6	269159	139	INTRON	INTRON	UHRF1BP1	ENSG00000065060.18	ENST00000192788.6	protein_coding	protein_coding	protein_coding	protein_coding	0	47	2	4.92355	5.06549	5.20743	0.00573514	7.78116e-4	0.0657377	0.0256531
chr10	68023252	68023351	4637416	0	-	0.323232	(0.32,0.35]	chr10	426398	87	INTRON	INTRON	HERC4	ENSG00000148634.16	ENST00000277817.10:ENST00000373700.9:ENST00000412272.6:ENST00000395198.7:ENST00000473533.6:ENST00000427635.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	48	2	4.89768	5.065475	5.23327	0.00793135	9.33826e-4	0.076155	0.0278746
chr18	2758832	2758929	6865939	0	+	0.340206	(0.32,0.35]	chr18	680135	21	INTRON	INTRON	SMCHD1	ENSG00000101596.17	ENST00000320876.11:ENST00000688342.1:ENST00000693213.1:ENST00000577880.5:ENST00000584897.5:ENST00000686763.1:ENST00000686864.1:ENST00000688708.1:ENST00000645355.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	48	2	4.89768	5.065475	5.23327	0.00793135	9.33826e-4	0.076155	0.0278746
chr15	56963671	56963771	6032562	0	+	0.36	(0.35,0.378]	chr15	574663	422	INTRON	INTRON	TCF12	ENSG00000140262.18	ENST00000438423.6:ENST00000267811.9:ENST00000333725.10:ENST00000560190.5:ENST00000559609.5:ENST00000558908.5:ENST00000557843.5:ENST00000557947.5:ENST00000561152.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	47	2	5.02832	5.06529	5.10226	0.00327038	0.00156444	0.0508595	0.0365263
chr10	3778357	3778455	4543128	0	-	0.336735	(0.32,0.35]	chr10	419496	25	UTR3	UTR3:EXON_MRNA:INTRON	KLF6	ENSG00000067082.15	ENST00000497571.6:ENST00000461124.1:ENST00000542957.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	48	2	4.99922	5.065225	5.13123	0.00394704	0.00223907	0.0548259	0.0435144
chr10	79761712	79761811	4657031	0	-	0.343434	(0.32,0.35]	chr10	429003	153	INTRON	INTRON	NUTM2B-AS1	ENSG00000225484.7	ENST00000671459.1:ENST00000596088.5:ENST00000600376.5:ENST00000601369.6:ENST00000662025.1:ENST00000670682.1:ENST00000619625.4:ENST00000658528.1:ENST00000477192.6	lncRNA	lncRNA	lncRNA	lncRNA	0	48	2	4.99922	5.065225	5.13123	0.00394704	0.00223907	0.0548259	0.0435144
chr2	108595718	108595818	846465	0	+	0.33	(0.32,0.35]	chr2	94686	7	INTRON	INTRON	LIMS1	ENSG00000169756.17	ENST00000695516.1:ENST00000544547.6:ENST00000695517.1:ENST00000695518.1:ENST00000695519.1:ENST00000332345.10:ENST00000695520.1:ENST00000393310.5:ENST00000695521.1	protein_coding	protein_coding	protein_coding	protein_coding	0	48	2	4.99922	5.065225	5.13123	0.00394704	0.00223907	0.0548259	0.0435144
chr4	150674389	150674489	2268315	0	-	0.27	[0,0.28]	chr4	220713	749	INTRON	INTRON	LRBA	ENSG00000198589.14	ENST00000357115.9:ENST00000651943.2:ENST00000510413.5:ENST00000509835.5:ENST00000651695.1:ENST00000651035.1:ENST00000507224.5:ENST00000513021.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	52	2	4.78142	5.0651600000000006	5.3489	0.00943974	0.00514751	0.0861183	0.062965
chr1	202513089	202513189	294435	0	+	0.47	(0.44,0.476]	chr1	33886	103	INTRON	INTRON	PPP1R12B	ENSG00000077157.22	ENST00000391959.5:ENST00000608999.6:ENST00000290419.9:ENST00000491336.5:ENST00000466273.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	46	2	4.83202	5.0646249999999995	5.29723	0.00525002	3.83422e-4	0.0633615	0.017699199999999998
chr3	172190795	172190895	1561065	0	+	0.47	(0.44,0.476]	chr3	161562	36	INTRON	INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000469491.5:ENST00000336824.8:ENST00000416957.5:ENST00000478016.1:ENST00000443501.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	46	2	4.83202	5.0646249999999995	5.29723	0.00525002	3.83422e-4	0.0633615	0.017699199999999998
chr17	57107445	57107522	6632573	0	+	0.337662	(0.32,0.35]	chr17	647899	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	AKAP1	ENSG00000121057.13	ENST00000337714.8:ENST00000571629.5:ENST00000621116.4:ENST00000572557.5:ENST00000481416.5:ENST00000539273.5:ENST00000314126.4:ENST00000576295.5:ENST00000573326.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	105	2	3.72276	5.064445	6.40613	3.96144e-4	2.35543e-5	0.0178616	0.00396325
chr1	176122868	176122968	590860	0	-	0.35	(0.32,0.35]	chr1	70926	58	INTRON	INTRON	COP1	ENSG00000143207.21	ENST00000367669.8:ENST00000367667.5:ENST00000367666.5:ENST00000649803.1:ENST00000308769.12:ENST00000459744.5:ENST00000498306.5:ENST00000491600.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	49	2	4.6938	5.0642	5.4346	0.0137794	4.09682e-4	0.0949306	0.0181306
chr12	31298823	31298922	5302581	0	-	0.30303	(0.28,0.32]	chr12	504664	2	INTRON	INTRON	SINHCAF	ENSG00000139146.14	ENST00000337682.9:ENST00000539409.5:ENST00000454658.6:ENST00000542983.1:ENST00000539004.5:ENST00000543615.1	protein_coding	protein_coding	protein_coding	protein_coding	0	49	2	4.92929	5.063855	5.19842	0.0098607	0.00152333	0.0838128	0.0360297
chr1	224946884	224946984	322524	0	+	0.39	(0.378,0.408]	chr1	37105	167	INTRON	INTRON	DNAH14	ENSG00000185842.16	ENST00000445597.6:ENST00000430092.5:ENST00000366850.7:ENST00000400952.7:ENST00000682510.1:ENST00000366849.5:ENST00000498360.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	47	2	4.84627	5.0633	5.28033	0.00254319	0.00143651	0.0465056	0.0340925
chr3	172139741	172139841	1560551	0	+	0.4	(0.378,0.408]	chr3	161547	58	INTRON	INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000421757.5:ENST00000469491.5:ENST00000336824.8:ENST00000423424.5:ENST00000416957.5:ENST00000478016.1:ENST00000443501.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	96	2	4.20738	5.063115	5.91885	1.02858e-4	2.43547e-5	0.00915589	0.00386122
chr1	100928538	100928638	174668	0	+	0.21	[0,0.28]	chr1	18964	63	INTRON	INTRON	SLC30A7	ENSG00000162695.12	ENST00000370112.8:ENST00000357650.9	protein_coding	protein_coding	protein_coding	protein_coding	0	51	2	4.82433	5.062715	5.3011	0.0200334	0.00185843	0.109608	0.039946
chr1	158632463	158632562	570060	0	-	0.252525	[0,0.28]	chr1	68772	44	INTRON	INTRON	SPTA1	ENSG00000163554.15	ENST00000643759.2:ENST00000461624.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	51	2	4.82433	5.062715	5.3011	0.0200334	0.00185843	0.109608	0.039946
chr10	35129255	35129354	4422727	0	+	0.262626	[0,0.28]	chr10	407755	13	INTRON	INTRON	CREM	ENSG00000095794.20	ENST00000474362.5:ENST00000374721.7:ENST00000496626.5:ENST00000685392.1:ENST00000482646.5:ENST00000489388.5:ENST00000374726.7:ENST00000461968.5:ENST00000490460.5:ENST00000466251.5:ENST00000482633.5:ENST00000495960.5:ENST00000686585.1:ENST00000429130.7:ENST00000469949.6:ENST00000460270.5:ENST00000496019.5:ENST00000354759.7:ENST00000489321.5:ENST00000374728.7:ENST00000427847.6:ENST00000345491.7:ENST00000487132.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	51	2	4.82433	5.062715	5.3011	0.0200334	0.00185843	0.109608	0.039946
chr7	50342033	50342133	3317078	0	+	0.27	[0,0.28]	chr7	308261	132	INTRON	INTRON	IKZF1	ENSG00000185811.20	ENST00000642219.1:ENST00000645066.1:ENST00000646110.1:ENST00000331340.8:ENST00000413698.5:ENST00000349824.8:ENST00000343574.9:ENST00000357364.8:ENST00000440768.6:ENST00000346667.8:ENST00000615491.4:ENST00000359197.9:ENST00000439701.2:ENST00000438033.5:ENST00000492782.6:ENST00000462201.1:ENST00000471793.1:ENST00000426121.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	51	2	4.91414	5.06234	5.21054	0.00758653	0.0064519	0.0749063	0.0730725
chr19	5587079	5587160	7123974	0	-	0.271605	[0,0.28]	chr19	716938	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	SAFB2	ENSG00000130254.12	ENST00000252542.9:ENST00000587802.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	117	2	4.14449	5.06222	5.97995	6.65031e-4	8.60514e-5	0.023496	0.00783027
chr12	118402748	118402829	5234670	0	+	0.432099	(0.408,0.44]	chr12	496649	1	SS5_PROX	SS5_PROX:INTRON	SUDS3	ENSG00000111707.12	ENST00000543473.2:ENST00000541591.5:ENST00000541280.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	46	2	4.8253	5.061545000000001	5.29779	0.0056738	3.80479e-4	0.0653997	0.0176313
chr16	15989840	15989940	6308161	0	+	0.42	(0.408,0.44]	chr16	603510	397	INTRON	INTRON	ABCC1	ENSG00000103222.20	ENST00000574224.2:ENST00000678422.1:ENST00000677164.1:ENST00000399408.7:ENST00000572882.3:ENST00000399410.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	46	2	4.8253	5.061545000000001	5.29779	0.0056738	3.80479e-4	0.0653997	0.0176313
chr11	13692464	13692564	4742544	0	+	0.36	(0.35,0.378]	chr11	439155	225	INTRON	INTRON	FAR1	ENSG00000197601.13	ENST00000354817.8:ENST00000532701.1	protein_coding	protein_coding	protein_coding	protein_coding	0	47	2	4.8587	5.060605	5.26251	0.00695662	6.20882e-4	0.0718189	0.0223951
chr7	92814502	92814602	3573040	0	-	0.31	(0.28,0.32]	chr7	332810	393	INTRON	INTRON	CDK6	ENSG00000105810.10	ENST00000424848.3:ENST00000265734.8	protein_coding	protein_coding	protein_coding	protein_coding	1	117	2	3.78535	5.059735	6.33412	6.21154e-4	8.58582e-6	0.0229151	0.00210871
chr3	45006005	45006096	1413706	0	+	0.340659	(0.32,0.35]	chr3	148397	2	INTRON	INTRON	EXOSC7	ENSG00000075914.13	ENST00000461361.5:ENST00000265564.8:ENST00000468667.5:ENST00000491476.5:ENST00000481405.1:ENST00000486727.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	48	2	4.93425	5.0592	5.18415	0.00333629	0.00281048	0.0512081	0.0488779
chr7	43678815	43678915	3525871	0	-	0.39	(0.378,0.408]	chr7	328779	127	INTRON	INTRON	COA1	ENSG00000106603.20	ENST00000415076.6:ENST00000446330.6:ENST00000446564.5:ENST00000438444.5:ENST00000223336.11:ENST00000310564.10:ENST00000415798.5:ENST00000431651.5:ENST00000451651.5:ENST00000418140.5:ENST00000448704.5:ENST00000470156.1:ENST00000457939.1:ENST00000420441.1:ENST00000478504.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	46	2	5.00459	5.058870000000001	5.11315	0.00371142	9.26795e-4	0.0535094	0.0278442
chr1	36177242	36177342	72875	0	+	0.4	(0.378,0.408]	chr1	9325	4	SS5_PROX	SS5_PROX:INTRON	MAP7D1	ENSG00000116871.16	ENST00000316156.8:ENST00000474796.2:ENST00000373150.8:ENST00000373151.6:ENST00000530975.4:ENST00000487131.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	48	2	4.58427	5.05863	5.53299	0.0128325	1.47095e-4	0.0926667	0.0105341
chr6	33270636	33270709	3082428	0	-	0.520548	(0.515,0.57]	chr6	288240	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	VPS52	ENSG00000223501.9	ENST00000478934.5:ENST00000482399.5:ENST00000445902.3:ENST00000463486.5:ENST00000464425.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	45	2	4.68568	5.057935	5.43019	0.00270027	2.60422e-4	0.0479115	0.0148796
chr10	11992794	11992893	4557276	0	-	0.40404	(0.378,0.408]	chr10	420588	133	INTRON	INTRON	UPF2	ENSG00000151461.20	ENST00000357604.10:ENST00000356352.6:ENST00000397053.6	protein_coding	protein_coding	protein_coding	protein_coding	0	46	2	5.05091	5.057515	5.06412	0.0030522	0.00118558	0.0493883	0.031662
chr7	36438205	36438305	3307508	0	+	0.39	(0.378,0.408]	chr7	307191	95	INTRON	INTRON	ANLN	ENSG00000011426.11	ENST00000396068.6:ENST00000265748.7:ENST00000428612.5:ENST00000457743.1	protein_coding	protein_coding	protein_coding	protein_coding	0	46	2	5.05091	5.057515	5.06412	0.0030522	0.00118558	0.0493883	0.031662
chr1	67421755	67421852	477542	0	-	0.515464	(0.515,0.57]	chr1	57477	12	INTRON	INTRON	SERBP1	ENSG00000142864.15	ENST00000370994.8:ENST00000361219.11:ENST00000370995.6:ENST00000370990.5:ENST00000493607.1:ENST00000484880.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	117	2	3.37276	5.057245	6.7417299999999996	1.02064e-4	1.44531e-7	0.00853098	1.81948e-4
chr2	201195055	201195150	982289	0	+	0.484211	(0.476,0.515]	chr2	105477	7	INTRON	INTRON	CASP10	ENSG00000003400.16	ENST00000374650.8:ENST00000492363.6:ENST00000460140.5:ENST00000313728.12:ENST00000272879.9:ENST00000346817.10:ENST00000696199.1:ENST00000286186.11:ENST00000438843.6:ENST00000471191.2:ENST00000448480.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	46	2	4.76827	5.05708	5.34589	0.00600704	3.224e-4	0.0674604	0.0159645
chr16	87741345	87741440	6538424	0	-	0.589474	(0.57,1]	chr16	633534	5	INTRON	INTRON	KLHDC4	ENSG00000104731.14	ENST00000567298.5:ENST00000270583.10:ENST00000347925.9:ENST00000353170.9:ENST00000316853.10:ENST00000566349.5:ENST00000562155.5:ENST00000622456.4:ENST00000562261.1:ENST00000566661.5:ENST00000564484.5:ENST00000565328.5:ENST00000569747.5:ENST00000564396.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	36	2	4.7773	5.05669	5.33608	5.07088e-4	3.92497e-5	0.0202328	0.00533644
chr4	908275	908375	2094048	0	-	0.58	(0.57,1]	chr4	206964	31	INTRON	INTRON	GAK	ENSG00000178950.18	ENST00000314167.9:ENST00000511163.5:ENST00000505819.5:ENST00000507580.5:ENST00000502656.5:ENST00000512325.3:ENST00000510022.5:ENST00000511229.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	36	2	4.7773	5.05669	5.33608	5.07088e-4	3.92497e-5	0.0202328	0.00533644
chr9	130819853	130819953	4214923	0	+	0.38	(0.378,0.408]	chr9	386427	1050	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000393293.4	protein_coding	protein_coding	protein_coding	protein_coding	8	242	2	2.66959	5.056635	7.44368	4.37003e-5	1.65989e-8	0.00534484	4.11909e-5
chr15	83473866	83473966	6082245	0	+	0.46	(0.44,0.476]	chr15	579031	259	INTRON	INTRON	SH3GL3	ENSG00000140600.17	ENST00000492099.1:ENST00000427482.7:ENST00000563901.5:ENST00000324537.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	46	2	4.76068	5.0555	5.35032	0.00653414	3.02713e-4	0.0699952	0.0155054
chr7	92211939	92212035	3569798	0	-	0.458333	(0.44,0.476]	chr7	332517	5	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	ENSG00000289027:KRIT1	ENSG00000289027.1:ENSG00000001631.17	ENST00000692281.1:ENST00000693096.1:ENST00000688180.1:ENST00000394507.5:ENST00000692807.1:ENST00000340022.6:ENST00000394505.7:ENST00000486261.5:ENST00000458177.7:ENST00000684808.1:ENST00000444960.6:ENST00000691239.1:ENST00000686094.1:ENST00000686527.1:ENST00000690529.1:ENST00000689411.1:ENST00000688665.1:ENST00000692157.1:ENST00000686043.1:ENST00000690720.1:ENST00000692690.1:ENST00000690908.1:ENST00000691827.1:ENST00000690751.1:ENST00000425073.2:ENST00000687876.1:ENST00000690904.1:ENST00000688781.1:ENST00000686785.1:ENST00000689556.1:ENST00000688314.1:ENST00000688404.1:ENST00000690292.1:ENST00000687135.1:ENST00000689082.1:ENST00000686149.1:ENST00000475770.6:ENST00000454017.6:ENST00000692361.1:ENST00000689778.1:ENST00000686619.1:ENST00000688766.1:ENST00000688580.1:ENST00000693563.1:ENST00000685431.1:ENST00000689539.1:ENST00000412043.6:ENST00000394503.6:ENST00000433016.6:ENST00000445516.2:ENST00000686233.1:ENST00000692205.1:ENST00000687627.1:ENST00000688196.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	46	2	4.76068	5.0555	5.35032	0.00653414	3.02713e-4	0.0699952	0.0155054
chr20	5972826	5972890	7230266	0	+	0.203125	[0,0.28]	chr20	734772	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MCM8	ENSG00000125885.13	ENST00000610722.4:ENST00000378883.5:ENST00000378896.7:ENST00000378886.6:ENST00000265187.4	protein_coding	protein_coding	protein_coding	protein_coding	0	53	2	4.63523	5.055185	5.47514	0.0139836	0.00354561	0.10247	0.0529186
chr2	68184778	68184877	1145841	0	-	0.474747	(0.44,0.476]	chr2	122371	34	INTRON	INTRON	PPP3R1	ENSG00000221823.11	ENST00000234310.8:ENST00000409752.5:ENST00000409377.1	protein_coding	protein_coding	protein_coding	protein_coding	0	46	2	4.85817	5.0549800000000005	5.25179	0.00223254	0.00124521	0.0435144	0.0322969
chr8	73963914	73963986	3972521	0	-	0.472222	(0.44,0.476]	chr8	364284	2	INTRON	INTRON	ELOC	ENSG00000154582.18	ENST00000602840.5:ENST00000518127.5:ENST00000520242.6:ENST00000687224.1:ENST00000622804.2:ENST00000688584.1:ENST00000685938.1:ENST00000520210.1:ENST00000284811.12:ENST00000519487.6:ENST00000522337.5:ENST00000523815.5:ENST00000519082.5	protein_coding	protein_coding	protein_coding	protein_coding	0	46	2	4.85817	5.0549800000000005	5.25179	0.00223254	0.00124521	0.0435144	0.0322969
chr1	180821460	180821559	271496	0	+	0.292929	(0.28,0.32]	chr1	31648	96	INTRON	INTRON	XPR1	ENSG00000143324.14	ENST00000367590.9:ENST00000367589.3	protein_coding	protein_coding	protein_coding	protein_coding	0	50	2	4.66359	5.05471	5.44583	0.0193496	5.8721e-4	0.108861	0.0220073
chr7	107557775	107557875	3612970	0	-	0.29	(0.28,0.32]	chr7	336723	4	SS5_PROX	SS5_PROX:INTRON	COG5	ENSG00000164597.15	ENST00000297135.9:ENST00000347053.8:ENST00000393603.7:ENST00000605888.1	protein_coding	protein_coding	protein_coding	protein_coding	0	50	2	4.66359	5.05471	5.44583	0.0193496	5.8721e-4	0.108861	0.0220073
chr15	55233082	55233182	6180330	0	-	0.37	(0.35,0.378]	chr15	589130	22	INTRON	INTRON	RAB27A	ENSG00000069974.16	ENST00000336787.6:ENST00000396307.6:ENST00000564609.5:ENST00000569493.5:ENST00000566877.5:ENST00000567380.5:ENST00000565972.5:ENST00000563262.5:ENST00000568803.1	protein_coding	protein_coding	protein_coding	protein_coding	1	108	2	3.54684	5.054275	6.56171	0.00119142	6.37078e-7	0.0315806	4.36324e-4
chr9	113234448	113234548	4189213	0	+	0.34	(0.32,0.35]	chr9	381956	69	INTRON	INTRON	SLC31A1	ENSG00000136868.11	ENST00000374212.5	protein_coding	protein_coding	protein_coding	protein_coding	0	51	2	4.45629	5.0542549999999995	5.65222	0.0246089	1.55757e-4	0.12011	0.0106835
chr19	5934462	5934552	7125160	0	-	0.244444	[0,0.28]	chr19	717341	1	INTRON	INTRON	RANBP3	ENSG00000031823.14	ENST00000340578.10:ENST00000439268.6:ENST00000592771.5:ENST00000591092.5:ENST00000034275.12:ENST00000587479.2:ENST00000592621.5:ENST00000590623.5:ENST00000591736.5:ENST00000590953.5:ENST00000588879.5:ENST00000587159.5:ENST00000586117.5:ENST00000589353.5:ENST00000587463.5:ENST00000588010.5:ENST00000591124.5:ENST00000585339.5:ENST00000592133.5:ENST00000591881.5:ENST00000589886.5:ENST00000587263.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	51	2	4.75964	5.054215	5.34879	0.0232081	0.00157139	0.118148	0.0365659
chr4	73227608	73227708	2160515	0	-	0.25	[0,0.28]	chr4	212799	46	INTRON	INTRON	ANKRD17	ENSG00000132466.20	ENST00000358602.9:ENST00000558247.5:ENST00000330838.10:ENST00000561029.1	protein_coding	protein_coding	protein_coding	protein_coding	0	51	2	4.75964	5.054215	5.34879	0.0232081	0.00157139	0.118148	0.0365659
chr14	34457596	34457696	5866091	0	-	0.4	(0.378,0.408]	chr14	557089	219	INTRON	INTRON	EGLN3:SPTSSA	ENSG00000129521.15:ENSG00000165389.7	ENST00000551935.5:ENST00000298130.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	46	2	4.87762	5.053865	5.23011	0.00553849	5.72873e-4	0.0648867	0.0217398
chr18	9590820	9590918	6946076	0	-	0.397959	(0.378,0.408]	chr18	687020	16	INTRON	INTRON	PPP4R1	ENSG00000154845.16	ENST00000400555.7:ENST00000400556.8:ENST00000285124.12:ENST00000580583.5:ENST00000578875.5:ENST00000578178.5:ENST00000583903.5:ENST00000579638.5:ENST00000584074.5:ENST00000579415.5:ENST00000581250.5:ENST00000580745.5:ENST00000582933.5:ENST00000580182.5:ENST00000582240.5:ENST00000581835.1:ENST00000583092.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	46	2	4.87762	5.053865	5.23011	0.00553849	5.72873e-4	0.0648867	0.0217398
chr5	146502874	146502952	2516080	0	+	0.24359	[0,0.28]	chr5	240387	1	SS3_PROX	SS3_PROX:INTRON	TCERG1	ENSG00000113649.13	ENST00000296702.9:ENST00000679501.2:ENST00000394421.7:ENST00000549332.1:ENST00000506524.5:ENST00000505285.5:ENST00000504116.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	51	2	4.84931	5.05373	5.25815	0.00779241	0.0066548	0.0787356	0.0703807
chr18	3452882	3452981	6867129	0	+	0.40404	(0.378,0.408]	chr18	680329	1	INTRON	INTRON	TGIF1	ENSG00000177426.22	ENST00000552383.5:ENST00000401449.5:ENST00000550958.5:ENST00000548489.6:ENST00000618001.4:ENST00000549780.5:ENST00000549253.5:ENST00000405385.7:ENST00000407501.6:ENST00000546979.5:ENST00000343820.10:ENST00000551402.1:ENST00000577543.5:ENST00000551541.5:ENST00000345133.9:ENST00000330513.10:ENST00000549546.5	protein_coding	protein_coding	protein_coding	protein_coding	0	46	2	4.98587	5.053575	5.12128	0.00251746	0.00152268	0.0446195	0.0360297
chr18	46175229	46175329	6899093	0	+	0.39	(0.378,0.408]	chr18	683605	5	INTRON	INTRON	C18orf25	ENSG00000152242.11	ENST00000588730.1:ENST00000587591.5:ENST00000619230.1:ENST00000615052.5:ENST00000619301.4:ENST00000615553.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	46	2	4.98587	5.053575	5.12128	0.00251746	0.00152268	0.0446195	0.0360297
chr8	144229500	144229599	3881150	0	+	0.40404	(0.378,0.408]	chr8	356723	59	INTRON	INTRON	MROH1	ENSG00000179832.18	ENST00000326134.10:ENST00000532255.5:ENST00000534366.5:ENST00000527552.5:ENST00000528919.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	46	2	4.98587	5.053575	5.12128	0.00251746	0.00152268	0.0446195	0.0360297
chr22	17906048	17906148	7549484	0	-	0.52	(0.515,0.57]	chr22	771749	1	SS5_PROX	SS5_PROX:INTRON	MICAL3	ENSG00000243156.9	ENST00000441493.7:ENST00000672019.1:ENST00000400561.6:ENST00000495076.5:ENST00000414725.6:ENST00000383094.7:ENST00000585038.1:ENST00000424046.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	43	2	4.97722	5.05348	5.12974	0.00168681	4.54392e-4	0.0370386	0.0192381
chr17	5489575	5489670	6551902	0	+	0.336842	(0.32,0.35]	chr17	636047	2	UTR3	UTR3:EXON_MRNA	MIS12	ENSG00000167842.16	ENST00000573759.1:ENST00000611091.5:ENST00000381165.3	protein_coding	protein_coding	protein_coding	protein_coding	0	50	2	4.64046	5.05344	5.46642	0.00724767	0.00127669	0.0756327	0.0326395
chr5	177519788	177519886	2778071	0	-	0.285714	(0.28,0.32]	chr5	261908	1	UTR3	UTR3:EXON_MRNA	FAM193B	ENSG00000146067.16	ENST00000514747.6:ENST00000505569.5:ENST00000513282.5:ENST00000506955.5:ENST00000510479.5:ENST00000510163.5:ENST00000506879.5:ENST00000524677.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	224	2	3.27704	5.053395	6.82975	9.00444e-6	6.04891e-6	0.00216015	0.00184807
chr19	28472079	28472179	7165815	0	-	0.39	(0.378,0.408]	chr19	724189	38	INTRON	INTRON	ENSG00000283403:ENSG00000267243	ENSG00000283403.1:ENSG00000267243.6	ENST00000592347.5:ENST00000593065.5	lncRNA	lncRNA	lncRNA	lncRNA	1	96	2	4.28727	5.05299	5.81871	1.62088e-4	1.52039e-5	0.0116382	0.00293131
chr11	668161	668260	4889205	0	-	0.363636	(0.35,0.378]	chr11	457709	80	INTRON	INTRON	DEAF1	ENSG00000177030.19	ENST00000382409.4:ENST00000527170.5:ENST00000685854.1:ENST00000683307.1:ENST00000528864.6:ENST00000525626.6:ENST00000682936.1:ENST00000690068.1:ENST00000692634.1:ENST00000687329.1:ENST00000686001.1:ENST00000689835.1:ENST00000525904.5:ENST00000530813.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	107	2	3.61133	5.0528	6.49427	9.14099e-4	9.79905e-7	0.0278396	5.60831e-4
chr5	88211973	88212073	2669166	0	-	0.32	(0.28,0.32]	chr5	252658	44	INTRON	INTRON	TMEM161B	ENSG00000164180.14	ENST00000514135.5:ENST00000296595.11:ENST00000511087.5:ENST00000510089.5:ENST00000506536.5:ENST00000511218.5:ENST00000512429.5:ENST00000507872.1:ENST00000509387.5:ENST00000503755.5:ENST00000513487.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	49	2	4.89962	5.05211	5.2046	0.00448664	0.00425206	0.0595557	0.0593175
chr2	15351491	15351591	1071033	0	-	0.5	(0.476,0.515]	chr2	114280	1	SS5_PROX	SS5_PROX:INTRON	NBAS	ENSG00000151779.13	ENST00000281513.10:ENST00000442506.5	protein_coding	protein_coding	protein_coding	protein_coding	1	94	2	4.25491	5.052054999999999	5.8492	8.94204e-5	1.76524e-5	0.00844245	0.0031975
chr5	137995105	137995205	2730416	0	-	0.41	(0.408,0.44]	chr5	256973	64	INTRON	INTRON	FAM13B	ENSG00000031003.11	ENST00000689681.1:ENST00000033079.7:ENST00000425075.6:ENST00000420893.6	protein_coding	protein_coding	protein_coding	protein_coding	0	46	2	4.85872	5.051864999999999	5.24501	0.00221911	0.00137378	0.0435144	0.0336718
chr9	91880158	91880258	4284564	0	-	0.46	(0.44,0.476]	chr9	393909	1040	INTRON	INTRON	ROR2	ENSG00000169071.15	ENST00000375715.5:ENST00000375708.4:ENST00000550066.5:ENST00000495386.5:ENST00000546883.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	47	2	4.70355	5.051775	5.4	0.00383786	7.02611e-4	0.0562562	0.024224
chr18	2766002	2766101	6866017	0	+	0.575758	(0.57,1]	chr18	680155	15	INTRON	INTRON	SMCHD1	ENSG00000101596.17	ENST00000320876.11:ENST00000688342.1:ENST00000693213.1:ENST00000577880.5:ENST00000584897.5:ENST00000686763.1:ENST00000686864.1:ENST00000688708.1:ENST00000645355.1:ENST00000688964.1:ENST00000685656.1:ENST00000689034.1:ENST00000693522.1:ENST00000583344.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	35	2	4.97458	5.051354999999999	5.12813	2.67728e-4	8.62401e-5	0.0149989	0.00783027
chr1	8673609	8673709	372341	0	-	0.33	(0.32,0.35]	chr1	43541	168	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000656437.1:ENST00000659924.1:ENST00000480342.5:ENST00000468247.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	48	2	4.76501	5.05123	5.33745	0.0114287	6.1485e-4	0.0886611	0.0223951
chr4	139064233	139064332	2246204	0	-	0.545455	(0.515,0.57]	chr4	219542	18	INTRON	INTRON	ELF2	ENSG00000109381.21	ENST00000394235.6:ENST00000686138.1:ENST00000379550.5:ENST00000358635.7:ENST00000379549.7:ENST00000510408.5:ENST00000512627.1:ENST00000514577.5:ENST00000504314.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	122	2	3.86943	5.051105	6.23278	7.03652e-6	1.00111e-6	0.00198457	5.70307e-4
chr8	38317762	38317858	3936768	0	-	0.322917	(0.32,0.35]	chr8	360773	15	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	NSD3	ENSG00000147548.17	ENST00000317025.13:ENST00000433384.6:ENST00000527502.5:ENST00000316985.7:ENST00000525081.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	163	2	3.32434	5.05081	6.77728	4.06293e-5	3.50024e-6	0.00518085	0.00133262
chr3	141877762	141877862	1526086	0	+	0.33	(0.32,0.35]	chr3	159004	2	SS5_PROX	SS5_PROX:INTRON	ATP1B3	ENSG00000069849.11	ENST00000475483.5:ENST00000465172.5:ENST00000286371.8:ENST00000466678.5:ENST00000462082.1:ENST00000495216.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	48	2	4.86622	5.0507100000000005	5.2352	0.00354075	0.0028268	0.0546236	0.0472361
chr1	235439964	235440059	340424	0	+	0.536842	(0.515,0.57]	chr1	39633	6	INTRON	INTRON	TBCE	ENSG00000285053.1:ENSG00000284770.2	ENST00000644055.1:ENST00000645655.1:ENST00000647428.1:ENST00000646624.1:ENST00000647186.1:ENST00000646528.1:ENST00000645351.1:ENST00000643410.1:ENST00000645205.1:ENST00000645836.1:ENST00000642503.1:ENST00000644680.1:ENST00000645578.1:ENST00000642431.1:ENST00000644604.1:ENST00000651186.1:ENST00000643125.1:ENST00000406207.5:ENST00000642463.1:ENST00000645899.1:ENST00000647233.1:ENST00000644578.1:ENST00000647418.1:ENST00000645582.1:ENST00000643994.1:ENST00000642610.2:ENST00000644037.1:ENST00000646463.1:ENST00000366601.8:ENST00000643524.1:ENST00000646536.1:ENST00000643142.1:ENST00000644838.1:ENST00000646286.1:ENST00000646186.1:ENST00000643615.1:ENST00000543662.4:ENST00000646848.1:ENST00000645551.1:ENST00000646821.1:ENST00000472011.6:ENST00000643238.1:ENST00000646104.1:ENST00000643993.1:ENST00000645964.1:ENST00000642339.1:ENST00000644217.1:ENST00000644265.1:ENST00000644910.1:ENST00000646842.1:ENST00000647322.1:ENST00000644126.1:ENST00000643487.1:ENST00000642764.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	43	2	4.99635	5.050414999999999	5.10448	0.0010345	8.06602e-4	0.029231300000000002	0.0258804
chr10	119049400	119049500	4704588	0	-	0.53	(0.515,0.57]	chr10	433934	2	SS5_PROX	SS5_PROX:INTRON	EIF3A	ENSG00000107581.13	ENST00000369144.8:ENST00000541549.2	protein_coding	protein_coding	protein_coding	protein_coding	0	43	2	4.99635	5.050414999999999	5.10448	0.0010345	8.06602e-4	0.029231300000000002	0.0258804
chrX	154545750	154545845	7914506	0	-	0.568421	(0.515,0.57]	chrX	806027	1	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	G6PD	ENSG00000160211.20	ENST00000696420.1:ENST00000696421.1:ENST00000393564.7:ENST00000439227.6:ENST00000696426.1:ENST00000393562.10:ENST00000696425.1:ENST00000696427.1:ENST00000696430.1:ENST00000696429.1:ENST00000696428.1:ENST00000369620.6:ENST00000440967.5:ENST00000433845.1:ENST00000497281.5:ENST00000696431.1:ENST00000488434.1:ENST00000647501.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	43	2	4.99635	5.050414999999999	5.10448	0.0010345	8.06602e-4	0.029231300000000002	0.0258804
chr8	127945140	127945240	3861570	0	+	0.38	(0.378,0.408]	chr8	355467	18	INTRON	INTRON	PVT1	ENSG00000249859.13	ENST00000667305.1:ENST00000690350.1:ENST00000653522.1:ENST00000661830.1:ENST00000657289.1:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000656880.1:ENST00000660200.1:ENST00000657211.1:ENST00000653845.1:ENST00000517525.2:ENST00000651587.1:ENST00000692980.1:ENST00000666353.1:ENST00000654324.1:ENST00000657693.1:ENST00000666080.1:ENST00000667539.1:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000664293.1:ENST00000662410.1:ENST00000670795.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000654091.1:ENST00000657356.1:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000662061.1:ENST00000656491.1:ENST00000667714.1:ENST00000654105.1:ENST00000665721.1:ENST00000660438.1:ENST00000659326.1:ENST00000666842.1:ENST00000517790.2:ENST00000654369.1:ENST00000664995.1:ENST00000656532.1:ENST00000661988.1:ENST00000670714.1:ENST00000669951.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000656693.1:ENST00000668123.1:ENST00000666776.1:ENST00000664299.1:ENST00000659912.1:ENST00000670532.1:ENST00000660896.1:ENST00000523068.2:ENST00000519481.6:ENST00000669082.1:ENST00000671088.1:ENST00000670204.1:ENST00000652695.1:ENST00000517838.6:ENST00000663461.1:ENST00000513868.6:ENST00000670626.1	lncRNA	lncRNA	lncRNA	lncRNA	0	47	2	4.77105	5.050364999999999	5.32968	0.00330823	0.00119786	0.0527031	0.0315806
chr12	104308859	104308958	5210229	0	+	0.343434	(0.32,0.35]	chr12	493210	174	INTRON	INTRON	TXNRD1	ENSG00000198431.17	ENST00000525566.6:ENST00000526266.5:ENST00000503506.6:ENST00000526691.5:ENST00000531691.5:ENST00000526390.5:ENST00000531689.5:ENST00000529546.5:ENST00000529751.1:ENST00000528079.6:ENST00000526580.5:ENST00000529784.5:ENST00000524698.5:ENST00000527688.5:ENST00000527335.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	49	2	4.61889	5.049860000000001	5.48083	0.0166646	3.35843e-4	0.102621	0.0162819
chr8	116862829	116862929	4034531	0	-	0.39	(0.378,0.408]	chr8	368140	3	SS5_PROX	SS5_PROX:INTRON	RAD21	ENSG00000164754.16	ENST00000297338.7:ENST00000517485.6:ENST00000519837.6:ENST00000522699.2:ENST00000687358.1:ENST00000520992.6:ENST00000517749.2:ENST00000687122.1:ENST00000685972.1:ENST00000687902.1:ENST00000690166.1:ENST00000523547.2:ENST00000686622.1:ENST00000688033.1:ENST00000690189.1:ENST00000689504.1:ENST00000519469.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	96	2	4.31295	5.04834	5.78373	1.89312e-4	1.30334e-5	0.012565	0.0026712
chr2	191678126	191678223	960359	0	+	0.628866	(0.57,1]	chr2	104274	1	UTR5	UTR5:EXON_MRNA	NABP1	ENSG00000173559.15	ENST00000491331.5:ENST00000307834.9:ENST00000674262.1:ENST00000674360.1:ENST00000674406.1:ENST00000674414.1:ENST00000410026.7:ENST00000674172.1:ENST00000674187.1:ENST00000307849.7:ENST00000425611.9:ENST00000462712.5:ENST00000451500.5:ENST00000409510.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	115	2	3.60932	5.04822	6.48712	2.84175e-7	4.3995e-9	2.89133e-4	2.0975e-5
chr1	243156821	243156888	667714	0	-	0.253731	[0,0.28]	chr1	79241	1	SS3_PROX	SS3_PROX:INTRON	CEP170	ENSG00000143702.16	ENST00000366544.5:ENST00000366543.5:ENST00000366542.6:ENST00000336415.8:ENST00000490813.5:ENST00000413359.6:ENST00000464936.5:ENST00000492145.1	protein_coding	protein_coding	protein_coding	protein_coding	0	50	2	5.00263	5.04772	5.09281	0.013055	0.00372534	0.093385	0.0561984
chr9	120571090	120571186	4333805	0	-	0.4375	(0.408,0.44]	chr9	398165	3	INTRON	INTRON	CDK5RAP2	ENSG00000136861.19	ENST00000349780.9:ENST00000360190.8:ENST00000687279.1:ENST00000687633.1:ENST00000690814.1:ENST00000693714.1:ENST00000693386.1:ENST00000686376.1:ENST00000692155.1:ENST00000690646.1:ENST00000693433.1:ENST00000473282.6:ENST00000480112.5:ENST00000685866.1:ENST00000689688.1:ENST00000416449.6:ENST00000691504.1:ENST00000360822.8:ENST00000693728.1:ENST00000690474.1:ENST00000693137.1:ENST00000481266.2:ENST00000472883.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	135	2	3.27443	5.047685	6.82094	3.21517e-4	5.28402e-8	0.0165575	9.68199e-5
chr11	70353800	70353900	4821274	0	+	0.38	(0.378,0.408]	chr11	449510	1	SS3_PROX	SS3_PROX:INTRON	PPFIA1	ENSG00000131626.19	ENST00000253925.12:ENST00000389547.7:ENST00000532504.5:ENST00000648755.1:ENST00000644155.1:ENST00000526262.5:ENST00000530798.5:ENST00000526347.5:ENST00000530294.5:ENST00000526074.5:ENST00000528750.1:ENST00000533894.5:ENST00000530390.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	46	2	4.80968	5.047445	5.28521	0.00679828	4.52877e-4	0.0711802	0.0192381
chr12	111870170	111870270	5229014	0	+	0.38	(0.378,0.408]	chr12	495660	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	MAPKAPK5	ENSG00000089022.14	ENST00000550735.7:ENST00000553053.5:ENST00000546394.1:ENST00000551404.6:ENST00000549875.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	46	2	4.91776	5.047015	5.17627	0.00208234	0.00196368	0.0411801	0.0411469
chr1	193024246	193024346	612511	0	-	0.22	[0,0.28]	chr1	72453	3	SS3_PROX	SS3_PROX:INTRON	UCHL5	ENSG00000116750.14	ENST00000367455.8:ENST00000367454.6:ENST00000420791.5:ENST00000367450.7:ENST00000367451.8:ENST00000367449.5:ENST00000367448.5:ENST00000443327.5:ENST00000421683.1	protein_coding	protein_coding	protein_coding	protein_coding	0	50	2	4.94561	5.04669	5.14777	0.0150263	0.00311898	0.0994339	0.0512673
chr18	1326980	1327080	6941449	0	-	0.22	[0,0.28]	chr18	686579	30	INTRON	INTRON	LINC00470	ENSG00000132204.14	ENST00000657423.1:ENST00000657618.1:ENST00000584090.5:ENST00000660947.1:ENST00000669242.1:ENST00000660475.1:ENST00000653775.1:ENST00000661931.1:ENST00000412816.7:ENST00000577867.5:ENST00000584492.5:ENST00000667416.1:ENST00000661852.1:ENST00000657919.1:ENST00000661646.1:ENST00000667776.1:ENST00000654559.1:ENST00000661233.1:ENST00000653213.1:ENST00000659094.1:ENST00000660964.1:ENST00000577403.6:ENST00000660358.1:ENST00000669153.1:ENST00000657121.1:ENST00000655957.1:ENST00000659289.1:ENST00000665133.1:ENST00000671558.1:ENST00000666542.1:ENST00000663512.1:ENST00000582862.6:ENST00000578835.5:ENST00000669312.1:ENST00000581430.5:ENST00000581212.1:ENST00000658090.1	lncRNA	lncRNA	lncRNA	lncRNA	0	50	2	4.94561	5.04669	5.14777	0.0150263	0.00311898	0.0994339	0.0512673
chr22	20936340	20936440	7480707	0	+	0.49	(0.476,0.515]	chr22	763096	17	INTRON	INTRON	CRKL	ENSG00000099942.13	ENST00000354336.8:ENST00000411769.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	45	2	4.97253	5.046625000000001	5.12072	0.00311573	8.42139e-4	0.0498063	0.0263691
chr6	84036077	84036176	2912672	0	+	0.262626	[0,0.28]	chr6	275240	18	INTRON	INTRON	MRAP2	ENSG00000135324.6	ENST00000257776.5	protein_coding	protein_coding	protein_coding	protein_coding	0	50	2	5.03568	5.0465800000000005	5.05748	0.0113653	0.00446141	0.0886611	0.0610799
chr19	21740678	21740778	7159029	0	-	0.28	[0,0.28]	chr19	723706	123	INTRON	INTRON	ZNF100	ENSG00000197020.12	ENST00000358296.11:ENST00000305570.10:ENST00000594401.1	protein_coding	protein_coding	protein_coding	protein_coding	1	115	2	4.0567	5.04618	6.03566	5.43045e-4	1.31789e-4	0.0215026	0.00990153
chr20	35033840	35033937	7332310	0	-	0.536082	(0.515,0.57]	chr20	746931	36	INTRON	INTRON	TRPC4AP	ENSG00000100991.12	ENST00000252015.3:ENST00000451813.6	protein_coding	protein_coding	protein_coding	protein_coding	0	43	2	4.83764	5.044735	5.25183	0.00279527	2.6074e-4	0.0469265	0.014326
chr7	98972045	98972145	3360248	0	+	0.55	(0.515,0.57]	chr7	313639	1	SS5_PROX	SS5_PROX:INTRON	TRRAP	ENSG00000196367.14	ENST00000355540.7:ENST00000359863.8:ENST00000628380.2:ENST00000456197.2:ENST00000446306.7:ENST00000360902.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	43	2	4.83764	5.044735	5.25183	0.00279527	2.6074e-4	0.0469265	0.014326
chrX	153789377	153789455	7911414	0	-	0.551282	(0.515,0.57]	chrX	805172	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	IDH3G	ENSG00000067829.20	ENST00000370092.7:ENST00000370093.5:ENST00000217901.10:ENST00000427365.6:ENST00000444450.5:ENST00000444338.1:ENST00000497043.5:ENST00000495356.5:ENST00000461215.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	43	2	4.83764	5.044735	5.25183	0.00279527	2.6074e-4	0.0469265	0.014326
chr1	223975510	223975607	643629	0	-	0.484536	(0.476,0.515]	chr1	76000	11	INTRON	INTRON	GTF2IP20	ENSG00000272645.4	ENST00000634905.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	46	2	4.77856	5.04457	5.31058	0.00305743	9.15544e-4	0.0509893	0.0278396
chr18	3252269	3252322	6866482	0	+	0.509434	(0.476,0.515]	chr18	680239	2	UTR5	UTR5:EXON_MRNA:INTRON	MYL12A	ENSG00000101608.13	ENST00000579226.5:ENST00000217652.8:ENST00000580353.1:ENST00000578611.5:ENST00000583449.1:ENST00000578562.6:ENST00000536605.1:ENST00000580887.5:ENST00000577510.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	46	2	4.77856	5.04457	5.31058	0.00305743	9.15544e-4	0.0509893	0.0278396
chr21	46224900	46224997	7470841	0	-	0.463918	(0.44,0.476]	chr21	761544	18	INTRON	INTRON	LSS	ENSG00000160285.15	ENST00000356396.8:ENST00000397728.8:ENST00000457828.6:ENST00000522411.5:ENST00000464357.1:ENST00000450351.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	160	2	3.32633	5.044565	6.7628	5.01735e-5	8.11187e-8	0.00612726	1.23205e-4
chrX	101047052	101047152	7855234	0	-	0.52	(0.515,0.57]	chrX	800835	30	INTRON	INTRON	TRMT2B:TRMT2B-AS1	ENSG00000188917.15:ENSG00000225839.2	ENST00000545398.5:ENST00000372936.4:ENST00000372939.5:ENST00000372935.5:ENST00000478422.1:ENST00000443801.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA:processed_transcript	2	120	2	3.33839	5.04444	6.75049	1.61956e-4	2.39707e-8	0.0116382	5.79662e-5
chr14	103693703	103693789	5828314	0	+	0.569767	(0.515,0.57]	chr14	553143	2	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	KLC1	ENSG00000126214.22	ENST00000348520.10:ENST00000334553.11:ENST00000555836.5:ENST00000347839.10:ENST00000452929.6:ENST00000554280.5:ENST00000557450.5:ENST00000554228.5:ENST00000634686.1:ENST00000246489.11:ENST00000535194.2:ENST00000538504.6:ENST00000557143.1:ENST00000557686.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	43	2	4.92473	5.04443	5.16413	0.00108255	8.14815e-4	0.0300133	0.0263656
chr17	66556078	66556178	6664834	0	+	0.48	(0.476,0.515]	chr17	650338	11	INTRON	INTRON	PRKCA	ENSG00000154229.12	ENST00000413366.8:ENST00000578063.5:ENST00000284384.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	45	2	4.99342	5.043825	5.09423	0.00204588	0.00139274	0.04086	0.0341261
chr3	47181891	47181991	1418258	0	+	0.49	(0.476,0.515]	chr3	148980	45	INTRON	INTRON	KIF9-AS1	ENSG00000227398.5	ENST00000429315.3	lncRNA	lncRNA	lncRNA	lncRNA	0	45	2	4.99342	5.043825	5.09423	0.00204588	0.00139274	0.04086	0.0341261
chrX	47172530	47172627	7655353	0	+	0.474227	(0.44,0.476]	chrX	783097	9	INTRON	INTRON	RBM10	ENSG00000182872.16	ENST00000377604.8:ENST00000345781.10:ENST00000628161.2:ENST00000329236.8	protein_coding	protein_coding	protein_coding	protein_coding	0	46	2	4.68564	5.04358	5.40152	0.00816201	2.39829e-4	0.0766625	0.0136403
chr2	8987990	8988090	1063412	0	-	0.25	[0,0.28]	chr2	113387	132	INTRON	INTRON	MBOAT2	ENSG00000143797.12	ENST00000305997.8:ENST00000486484.5:ENST00000477073.5:ENST00000462696.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	51	2	4.69191	5.04343	5.39495	0.0269474	0.00133175	0.123442	0.0335129
chr3	100301914	100301990	1465990	0	+	0.355263	(0.35,0.378]	chr3	153647	2	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	TBC1D23	ENSG00000036054.13	ENST00000394144.9:ENST00000344949.9:ENST00000486274.5:ENST00000475134.1:ENST00000496167.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	47	2	4.71953	5.04313	5.3667299999999996	0.0103314	3.99274e-4	0.0850389	0.0179401
chr20	35741556	35741626	7336558	0	-	0.585714	(0.57,1]	chr20	747515	2	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	RBM39	ENSG00000131051.24	ENST00000253363.11:ENST00000639702.1:ENST00000656873.1:ENST00000463004.5:ENST00000361162.10:ENST00000403542.6:ENST00000338163.10:ENST00000528062.7:ENST00000429968.5:ENST00000444878.5:ENST00000665058.1:ENST00000374038.7:ENST00000412738.5:ENST00000434927.5:ENST00000455343.5:ENST00000416108.5:ENST00000442447.5:ENST00000433027.5:ENST00000453310.5:ENST00000416529.5:ENST00000397370.3:ENST00000463098.5:ENST00000461849.1:ENST00000493853.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	116	2	4.81168	5.042965000000001	5.27425	7.08487e-8	1.36174e-9	1.16358e-4	6.52376e-6
chrX	48913560	48913655	7815641	0	-	0.452632	(0.44,0.476]	chrX	796797	5	UTR3	UTR3:EXON_MRNA	PIM2	ENSG00000102096.9	ENST00000376509.4	protein_coding	protein_coding	protein_coding	protein_coding	6	406	2	4.17382	5.042815	5.91181	3.49593e-9	5.6795e-10	1.76981e-5	3.32043e-6
chr18	9549438	9549494	6945639	0	-	0.303571	(0.28,0.32]	chr18	686938	1	SS3_PROX	SS3_PROX:INTRON	PPP4R1	ENSG00000154845.16	ENST00000400555.7:ENST00000400556.8:ENST00000582594.5:ENST00000285124.12:ENST00000579609.5:ENST00000578329.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	49	2	4.83165	5.042764999999999	5.25388	0.00527257	0.00385849	0.0656295	0.0542786
chr11	87127364	87127464	4843708	0	+	0.46	(0.44,0.476]	chr11	451856	356	INTRON	INTRON	TMEM135	ENSG00000166575.17	ENST00000340353.11:ENST00000529023.5:ENST00000526733.5:ENST00000305494.6:ENST00000532959.5:ENST00000525018.5:ENST00000531800.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	45	2	4.9	5.0424050000000005	5.18481	0.00423315	6.21872e-4	0.0572185	0.0223951
chr15	40743646	40743746	6151241	0	-	0.42	(0.408,0.44]	chr15	585115	2	SS5_PROX	SS5_PROX:INTRON	RMDN3	ENSG00000137824.16	ENST00000260385.10:ENST00000338376.8:ENST00000558777.5:ENST00000558232.5:ENST00000560779.5:ENST00000558560.1:ENST00000560460.5:ENST00000558364.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	45	2	5.02028	5.041855	5.06343	0.00303216	0.00101725	0.0493883	0.0293497
chr17	58816013	58816113	6638245	0	+	0.44	(0.408,0.44]	chr17	648237	592	INTRON	INTRON	PPM1E	ENSG00000175175.6	ENST00000308249.4	protein_coding	protein_coding	protein_coding	protein_coding	0	45	2	5.02028	5.041855	5.06343	0.00303216	0.00101725	0.0493883	0.0293497
chr21	43023589	43023687	7412042	0	+	0.428571	(0.408,0.44]	chr21	755364	18	INTRON	INTRON	PKNOX1	ENSG00000160199.15	ENST00000432907.6:ENST00000291547.10:ENST00000560448.5:ENST00000607049.5:ENST00000557820.5:ENST00000474336.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	45	2	5.02028	5.041855	5.06343	0.00303216	0.00101725	0.0493883	0.0293497
chr5	38942562	38942647	2604280	0	-	0.435294	(0.408,0.44]	chr5	247706	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RICTOR	ENSG00000164327.13	ENST00000357387.8:ENST00000511516.5:ENST00000296782.9:ENST00000505927.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	45	2	5.02028	5.041855	5.06343	0.00303216	0.00101725	0.0493883	0.0293497
chr1	19162158	19162238	386314	0	-	0.35	(0.32,0.35]	chr1	45971	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	UBR4	ENSG00000127481.15	ENST00000375254.8:ENST00000417040.1:ENST00000419533.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	48	2	4.6938	5.04032	5.38684	0.0137794	5.01164e-4	0.0949306	0.020217099999999998
chr16	53468445	53468542	6353894	0	+	0.329897	(0.32,0.35]	chr16	610019	9	INTRON	INTRON	RBL2	ENSG00000103479.17	ENST00000680543.1:ENST00000262133.11:ENST00000544405.6:ENST00000379935.8:ENST00000562837.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	48	2	4.6938	5.04032	5.38684	0.0137794	5.01164e-4	0.0949306	0.020217099999999998
chr20	50951740	50951838	7356066	0	-	0.357143	(0.35,0.378]	chr20	750154	24	INTRON	INTRON	DPM1	ENSG00000000419.14	ENST00000371582.8:ENST00000466152.5:ENST00000683048.1:ENST00000371588.10:ENST00000371584.9:ENST00000683466.1:ENST00000681979.1:ENST00000684708.1:ENST00000413082.1:ENST00000682754.1:ENST00000683010.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	97	2	4.11715	5.039904999999999	5.96266	1.153e-4	4.60289e-5	0.00968369	0.00552588
chr1	11088988	11089085	376785	0	-	0.42268	(0.408,0.44]	chr1	44036	4	INTRON	INTRON	EXOSC10	ENSG00000171824.14	ENST00000304457.11:ENST00000376936.9	protein_coding	protein_coding	protein_coding	protein_coding	0	46	2	4.78348	5.0398	5.29612	0.00290352	0.00113523	0.0494641	0.0307488
chr19	57293391	57293488	7103661	0	+	0.309278	(0.28,0.32]	chr19	712862	13	UTR3	UTR3:EXON_MRNA	ZNF460	ENSG00000197714.9	ENST00000360338.4	protein_coding	protein_coding	protein_coding	protein_coding	0	50	2	4.58875	5.039675	5.4906	0.0230574	4.89126e-4	0.118056	0.0199693
chr2	110660336	110660436	1206681	0	-	0.35	(0.32,0.35]	chr2	128687	3	SS3_PROX	SS3_PROX:INTRON	BUB1	ENSG00000169679.15	ENST00000302759.11:ENST00000535254.6:ENST00000409311.5:ENST00000466333.5:ENST00000666956.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	233	2	4.99928	5.038634999999999	5.07799	1.00058e-6	1.40698e-7	6.19632e-4	1.69668e-4
chr15	41232445	41232545	6003873	0	+	0.51	(0.476,0.515]	chr15	571184	6	INTRON	INTRON	CHP1	ENSG00000187446.12	ENST00000558351.5:ENST00000560411.5:ENST00000560784.5:ENST00000392151.6:ENST00000561280.5:ENST00000334660.10:ENST00000560397.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	45	2	4.92529	5.038360000000001	5.15143	0.00180221	0.00166579	0.0392772	0.0369207
chr7	156821641	156821741	3687295	0	-	0.37	(0.35,0.378]	chr7	342064	248	INTRON	INTRON	LMBR1	ENSG00000105983.23	ENST00000353442.10:ENST00000415428.5:ENST00000454132.5:ENST00000434503.5:ENST00000430278.5:ENST00000434278.5:ENST00000444719.5:ENST00000461469.5:ENST00000414218.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	46	2	4.98561	5.038065	5.09052	0.00474226	0.00123501	0.0600445	0.0326215
chr4	67471520	67471618	2152755	0	-	0.204082	[0,0.28]	chr4	211903	29	UTR3	UTR3:EXON_MRNA	CENPC	ENSG00000145241.11	ENST00000273853.11	protein_coding	protein_coding	protein_coding	protein_coding	0	50	2	4.82433	5.038055	5.25178	0.0200334	0.0022031	0.109608	0.0435144
chr9	131214228	131214326	4216545	0	+	0.387755	(0.378,0.408]	chr9	386674	17	EXON_MRNA	EXON_MRNA:INTRON	NUP214	ENSG00000126883.19	ENST00000695497.1:ENST00000695498.1:ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000524578.6:ENST00000453861.6:ENST00000483497.6:ENST00000695500.1:ENST00000650694.1:ENST00000695501.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	48	2	4.60771	5.0380199999999995	5.46833	0.00567576	7.05018e-4	0.0678837	0.024224
chr2	74177810	74177908	1157120	0	-	0.336735	(0.32,0.35]	chr2	123721	3	SS5_PROX	SS5_PROX:INTRON	MOB1A	ENSG00000114978.18	ENST00000396049.5:ENST00000497054.5:ENST00000495286.5:ENST00000463975.1:ENST00000488006.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	47	2	4.89768	5.03795	5.17822	0.00793135	0.00115625	0.076155	0.0313436
chr3	14162918	14163017	1619009	0	-	0.333333	(0.32,0.35]	chr3	167323	27	INTRON	INTRON	XPC	ENSG00000154767.15	ENST00000285021.12:ENST00000476581.6:ENST00000477324.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	47	2	4.99922	5.037755000000001	5.07629	0.00468114	0.00223907	0.0600108	0.0435144
chr2	208284236	208284335	992184	0	+	0.393939	(0.378,0.408]	chr2	106617	62	INTRON	INTRON	PIKFYVE	ENSG00000115020.17	ENST00000264380.9:ENST00000443896.5:ENST00000392202.7:ENST00000407449.5:ENST00000308862.10:ENST00000422495.5:ENST00000452564.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	46	2	4.84627	5.037755	5.22924	0.00254319	0.00172721	0.0465056	0.0374701
chr1	201856595	201856695	292040	0	+	0.24	[0,0.28]	chr1	33574	1	SS3_PROX	SS3_PROX:INTRON	IPO9	ENSG00000198700.10	ENST00000361565.9	protein_coding	protein_coding	protein_coding	protein_coding	0	50	2	4.91414	5.03772	5.1613	0.00866441	0.0064519	0.0787025	0.0730725
chr1	227049895	227049994	649007	0	-	0.222222	[0,0.28]	chr1	76972	15	INTRON	INTRON	CDC42BPA	ENSG00000143776.20	ENST00000366766.8:ENST00000366769.7:ENST00000334218.9:ENST00000366767.7:ENST00000448940.5:ENST00000442054.5:ENST00000366764.8:ENST00000441725.1	protein_coding	protein_coding	protein_coding	protein_coding	0	50	2	4.91414	5.03772	5.1613	0.00866441	0.0064519	0.0787025	0.0730725
chr20	31693077	31693177	7325074	0	-	0.17	[0,0.28]	chr20	745996	81	INTRON	INTRON	BCL2L1	ENSG00000171552.14	ENST00000376055.9:ENST00000376062.6:ENST00000307677.5:ENST00000420488.6:ENST00000439267.2:ENST00000678563.1:ENST00000456404.6:ENST00000676942.1:ENST00000676582.1:ENST00000434194.2:ENST00000677194.1:ENST00000678671.1:ENST00000677494.1:ENST00000422920.2:ENST00000450273.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	50	2	4.91414	5.03772	5.1613	0.00866441	0.0064519	0.0787025	0.0730725
chr17	46180026	46180126	6784741	0	-	0.31	(0.28,0.32]	chr17	669245	74	INTRON	INTRON	KANSL1	ENSG00000120071.15	ENST00000574590.6:ENST00000572904.6:ENST00000432791.7:ENST00000575318.6:ENST00000638275.1:ENST00000262419.10:ENST00000648792.1:ENST00000639150.1:ENST00000571698.2:ENST00000639375.1:ENST00000638269.1:ENST00000639356.1:ENST00000574655.6:ENST00000639099.1:ENST00000638902.1:ENST00000576739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	48	2	4.98872	5.03747	5.08622	0.00838468	0.00227525	0.0774402	0.0437013
chr5	109383920	109384020	2702110	0	-	0.3	(0.28,0.32]	chr5	254359	4	SS3_PROX	SS3_PROX:INTRON	PJA2	ENSG00000198961.10	ENST00000361189.7:ENST00000511624.1:ENST00000512822.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	48	2	4.98872	5.03747	5.08622	0.00838468	0.00227525	0.0774402	0.0437013
chr21	43738861	43738958	7413353	0	+	0.443299	(0.44,0.476]	chr21	755532	1	INTRON	INTRON	PDXK	ENSG00000160209.19	ENST00000468090.5:ENST00000291565.9:ENST00000398085.7:ENST00000470029.5:ENST00000498040.5:ENST00000472777.5:ENST00000481512.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	45	2	4.83202	5.037065	5.24211	0.00525002	4.87398e-4	0.0633615	0.0199652
chr12	42363394	42363493	5118602	0	+	0.353535	(0.35,0.378]	chr12	482951	18	INTRON	INTRON	PPHLN1	ENSG00000134283.18	ENST00000549190.5:ENST00000337898.10:ENST00000395580.7:ENST00000610488.4:ENST00000619544.4:ENST00000613154.4:ENST00000551723.5:ENST00000552429.5:ENST00000395568.6:ENST00000256678.12:ENST00000358314.12:ENST00000449194.6:ENST00000552761.5:ENST00000551406.5:ENST00000317560.13:ENST00000432191.6:ENST00000552202.5:ENST00000546750.5:ENST00000547847.1:ENST00000552794.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	46	2	4.92355	5.036854999999999	5.15016	0.00573514	9.78549e-4	0.0657377	0.0287765
chr17	57310626	57310726	6633295	0	+	0.46	(0.44,0.476]	chr17	648023	3	SS5_PROX	SS5_PROX:INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000581776.5:ENST00000674961.1:ENST00000582453.5:ENST00000675656.1:ENST00000322684.7:ENST00000579590.5:ENST00000676073.1:ENST00000675822.1:ENST00000442934.6:ENST00000579180.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	45	2	4.92968	5.03673	5.14378	0.00184943	0.00171443	0.0388609	0.0381936
chr10	73237969	73238069	4648853	0	-	0.36	(0.35,0.378]	chr10	427670	540	INTRON	INTRON	DNAJC9	ENSG00000213551.7	ENST00000469143.1	protein_coding	processed_transcript	protein_coding	processed_transcript	0	46	2	5.02832	5.03672	5.04512	0.00393262	0.00156444	0.0548259	0.0365263
chr12	27028959	27029059	5097758	0	+	0.37	(0.35,0.378]	chr12	481660	6	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	MED21	ENSG00000152944.9	ENST00000546323.5:ENST00000536503.5:ENST00000282892.4:ENST00000538186.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	46	2	5.02832	5.03672	5.04512	0.00393262	0.00156444	0.0548259	0.0365263
chr12	46361012	46361110	5316570	0	-	0.387755	(0.378,0.408]	chr12	505763	30	UTR3	UTR3:EXON_MRNA	SLC38A2	ENSG00000134294.14	ENST00000256689.10:ENST00000549258.5:ENST00000551374.5:ENST00000552703.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	94	2	4.0017	5.036695	6.07169	7.73853e-5	4.98726e-5	0.00735438	0.00611327
chr3	195318912	195319011	1894661	0	-	0.59596	(0.57,1]	chr3	189624	56	INTRON	INTRON	ACAP2	ENSG00000114331.16	ENST00000326793.11:ENST00000635383.1:ENST00000439758.3	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.67443	5.036545	5.39866	8.07515e-4	2.7267e-5	0.0258804	0.00430583
chrX	20152304	20152404	7772235	0	-	0.29	(0.28,0.32]	chrX	794449	25	UTR3	UTR3:EXON_MRNA	RPS6KA3	ENSG00000177189.14	ENST00000379565.9	protein_coding	protein_coding	protein_coding	protein_coding	0	48	2	4.92929	5.0363500000000005	5.14341	0.0098607	0.00185891	0.0838128	0.039946
chr18	26089158	26089257	6959728	0	-	0.282828	(0.28,0.32]	chr18	688514	12	INTRON	INTRON	SS18	ENSG00000141380.14	ENST00000415083.7:ENST00000542420.6:ENST00000579640.5:ENST00000269138.9:ENST00000269137.11:ENST00000585121.5:ENST00000539244.6:ENST00000585241.5:ENST00000578954.5:ENST00000579061.5:ENST00000577636.5:ENST00000584083.5:ENST00000578700.5:ENST00000582792.5:ENST00000581021.5:ENST00000577572.5:ENST00000582448.5:ENST00000581570.5:ENST00000577751.5:ENST00000580751.5:ENST00000580642.2:ENST00000578595.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	48	2	5.02666	5.036225	5.04579	0.00714672	0.0027935	0.0723634	0.0488769
chr3	185921761	185921835	1886433	0	-	0.22973	[0,0.28]	chr3	188618	2	SS5_PROX	SS5_PROX:INTRON	TRA2B	ENSG00000136527.19	ENST00000453386.7:ENST00000492417.5:ENST00000463328.5:ENST00000259043.11:ENST00000414862.5:ENST00000487615.5:ENST00000466832.5:ENST00000456380.5:ENST00000382191.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	125	2	3.69359	5.035645	6.3777	0.00122246	1.8994e-5	0.0320622	0.00333235
chr1	201989931	201990031	292580	0	+	0.55	(0.515,0.57]	chr1	33705	4	SS5_PROX	SS5_PROX:INTRON	RNPEP	ENSG00000176393.11	ENST00000481780.5:ENST00000295640.9:ENST00000367286.7:ENST00000487116.5:ENST00000492587.5:ENST00000471105.5:ENST00000447312.5:ENST00000478617.5:ENST00000479726.5:ENST00000492849.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	118	2	3.59354	5.035605	6.47767	3.84354e-5	1.83161e-7	0.00528498	1.99431e-4
chr11	19235654	19235751	4933977	0	-	0.391753	(0.378,0.408]	chr11	462169	2	INTRON	INTRON	E2F8	ENSG00000129173.13	ENST00000527884.5:ENST00000250024.9:ENST00000620009.4	protein_coding	protein_coding	protein_coding	protein_coding	0	52	2	4.32174	5.034805	5.74787	0.0132362	2.21531e-4	0.0999551	0.0136064
chr5	1321058	1321134	2564688	0	-	0.631579	(0.57,1]	chr5	245552	4	SS3_PROX	SS3_PROX:INTRON	CLPTM1L	ENSG00000049656.14	ENST00000320895.10:ENST00000507807.3:ENST00000503042.5:ENST00000630539.1:ENST00000503534.5:ENST00000515719.5:ENST00000506641.5:ENST00000511268.6:ENST00000512451.5:ENST00000507195.5:ENST00000505914.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	38	2	4.44366	5.034285000000001	5.62491	0.00210922	6.73465e-6	0.0425419	0.00194394
chr1	944202	944300	358259	0	-	0.387755	(0.378,0.408]	chr1	41227	1	UTR3	UTR3:EXON_MRNA	NOC2L	ENSG00000188976.11	ENST00000327044.7:ENST00000483767.5:ENST00000477976.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	136	2	3.35676	5.03382	6.71088	2.33175e-4	1.49347e-7	0.013966	1.76521e-4
chr4	126557511	126557611	2236284	0	-	0.42	(0.408,0.44]	chr4	219023	920	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	0	45	2	4.93024	5.0336300000000005	5.13702	0.00202889	0.00170369	0.04086	0.0381936
chr12	111432263	111432363	5227851	0	+	0.56	(0.515,0.57]	chr12	495494	130	INTRON	INTRON	SH2B3	ENSG00000111252.11	ENST00000341259.7:ENST00000550925.2	protein_coding	protein_coding	protein_coding	protein_coding	0	44	2	4.68568	5.03322	5.38076	0.00270027	3.24968e-4	0.0479115	0.0165891
chr3	33664913	33665013	1653470	0	-	0.47	(0.44,0.476]	chr3	169658	10	INTRON	INTRON	CLASP2	ENSG00000163539.18	ENST00000399362.8:ENST00000682230.1:ENST00000468888.6:ENST00000359576.9	protein_coding	protein_coding	protein_coding	protein_coding	4	181	2	3.05237	5.033075	7.01378	7.94657e-5	1.28771e-8	0.00801397	3.90337e-5
chr16	12053681	12053780	6292095	0	+	0.343434	(0.32,0.35]	chr16	602404	5	INTRON	INTRON	SNX29	ENSG00000048471.14	ENST00000566228.6:ENST00000563308.1	protein_coding	protein_coding	protein_coding	protein_coding	0	47	2	4.83287	5.03307	5.23327	0.0095071	9.33826e-4	0.0817766	0.0278746
chr17	30860712	30860812	6590720	0	+	0.35	(0.32,0.35]	chr17	640971	1	SS5_PROX	SS5_PROX:INTRON	ATAD5	ENSG00000176208.9	ENST00000321990.5:ENST00000578295.5:ENST00000585133.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:non_stop_decay	0	47	2	4.83287	5.03307	5.23327	0.0095071	9.33826e-4	0.0817766	0.0278746
chr1	85669249	85669349	497655	0	-	0.37	(0.35,0.378]	chr1	59001	109	INTRON	INTRON	ZNHIT6	ENSG00000117174.11	ENST00000370574.4:ENST00000431532.6	protein_coding	protein_coding	protein_coding	protein_coding	0	46	2	4.8587	5.033065	5.20743	0.00695662	7.78116e-4	0.0718189	0.0256531
chr17	22145765	22145865	6579121	0	+	0.5	(0.476,0.515]	chr17	639556	545	INTRON	INTRON	UBBP4	ENSG00000263563.7	ENST00000648259.1:ENST00000688301.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	1	92	2	4.05333	5.032909999999999	6.01249	5.62932e-5	4.02459e-5	0.00613846	0.00539487
chr13	113638490	113638584	5550382	0	+	0.478723	(0.476,0.515]	chr13	530426	2	INTRON	INTRON	TFDP1	ENSG00000198176.13	ENST00000375370.10:ENST00000544902.5:ENST00000494812.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	101	2	4.27469	5.0327649999999995	5.79084	3.67793e-5	2.76255e-5	0.00485247	0.0043098
chr14	39071841	39071940	5878425	0	-	0.323232	(0.32,0.35]	chr14	558077	42	INTRON	INTRON	SEC23A	ENSG00000100934.15	ENST00000307712.11:ENST00000537403.5:ENST00000545328.6	protein_coding	protein_coding	protein_coding	protein_coding	0	47	2	4.93425	5.03274	5.13123	0.00394704	0.00281048	0.0548259	0.0488779
chr16	16026413	16026513	6308530	0	+	0.3	(0.28,0.32]	chr16	603534	94	INTRON	INTRON	ABCC1	ENSG00000103222.20	ENST00000574224.2:ENST00000678422.1:ENST00000677164.1:ENST00000399408.7:ENST00000572882.3:ENST00000399410.8:ENST00000679043.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	48	2	4.96454	5.032615	5.10069	0.00610574	0.00344078	0.0676501	0.0539802
chr7	27525537	27525634	3509562	0	-	0.309278	(0.28,0.32]	chr7	327307	2	UTR3	UTR3:EXON_MRNA	HIBADH	ENSG00000106049.9	ENST00000265395.7:ENST00000428288.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	48	2	4.96454	5.032615	5.10069	0.00610574	0.00344078	0.0676501	0.0539802
chr19	1598826	1598911	7112590	0	-	0.623529	(0.57,1]	chr19	714554	1	INTRON	INTRON	ENSG00000267059:UQCR11	ENSG00000267059.2:ENSG00000127540.12	ENST00000585937.1:ENST00000591899.8:ENST00000593029.1:ENST00000589880.1:ENST00000593264.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	62	2	4.15569	5.0323899999999995	5.90909	1.16266e-5	9.66825e-7	0.00251847	6.0856e-4
chr6	33272313	33272404	2846774	0	+	0.571429	(0.57,1]	chr6	268607	3	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPS18	ENSG00000231500.7	ENST00000439602.7:ENST00000474973.5:ENST00000474626.5:ENST00000476222.5:ENST00000496813.5:ENST00000490191.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	64	2	4.36457	5.031924999999999	5.69928	2.99869e-6	2.48853e-6	0.00121975	0.00100001
chr9	131184566	131184663	4216235	0	+	0.474227	(0.44,0.476]	chr9	386631	3	EXON_MRNA	EXON_MRNA:INTRON	NUP214	ENSG00000126883.19	ENST00000695497.1:ENST00000695498.1:ENST00000695496.1:ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000525980.5:ENST00000526346.5:ENST00000531929.5:ENST00000651334.1:ENST00000524578.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	123	2	3.48044	5.031315	6.58219	6.78832e-5	2.09464e-6	0.00682671	0.00100071
chr4	173372096	173372195	2082518	0	+	0.494949	(0.476,0.515]	chr4	205780	2	INTRON	INTRON	SAP30	ENSG00000164105.4	ENST00000296504.4	protein_coding	protein_coding	protein_coding	protein_coding	0	45	2	4.76827	5.03054	5.29281	0.00600704	4.07635e-4	0.0674604	0.0181306
chr7	158682899	158682999	3688572	0	-	0.22	[0,0.28]	chr7	342234	2	SS5_PROX	SS5_PROX:INTRON	NCAPG2	ENSG00000146918.20	ENST00000356309.8:ENST00000432615.5:ENST00000409423.5:ENST00000441982.5:ENST00000467785.5:ENST00000409339.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	50	2	4.75964	5.03037	5.3011	0.0232081	0.00185843	0.118148	0.039946
chr8	140912519	140912619	4079184	0	-	0.26	[0,0.28]	chr8	370549	25	INTRON	INTRON	PTK2	ENSG00000169398.20	ENST00000696786.1:ENST00000522684.5:ENST00000395218.3:ENST00000521059.5:ENST00000517887.5:ENST00000519993.5:ENST00000340930.7:ENST00000519419.5:ENST00000524357.5:ENST00000521791.5:ENST00000523067.5:ENST00000520828.5:ENST00000520475.5:ENST00000519881.5:ENST00000520892.5:ENST00000523803.5:ENST00000521907.5:ENST00000517453.5:ENST00000520045.5:ENST00000521395.5:ENST00000523675.1:ENST00000521332.5:ENST00000524040.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	50	2	4.75964	5.03037	5.3011	0.0232081	0.00185843	0.118148	0.039946
chr17	62058483	62058582	6810813	0	-	0.353535	(0.35,0.378]	chr17	672952	54	INTRON	INTRON	MED13	ENSG00000108510.10	ENST00000397786.7	protein_coding	protein_coding	protein_coding	protein_coding	0	47	2	4.64457	5.03036	5.41615	0.012652	3.21724e-4	0.0926667	0.0159645
chr14	101828908	101829008	5819180	0	+	0.51	(0.476,0.515]	chr14	551860	36	INTRON	INTRON	PPP2R5C	ENSG00000078304.20	ENST00000694906.1:ENST00000422945.6:ENST00000554442.5:ENST00000328724.9:ENST00000553890.1:ENST00000350249.7:ENST00000557621.5:ENST00000556946.1:ENST00000556307.5:ENST00000553730.5:ENST00000557714.1:ENST00000334743.9:ENST00000445439.7:ENST00000557095.5:ENST00000556493.1:ENST00000553842.1:ENST00000556373.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	46	2	4.61402	5.030275	5.44653	0.00947755	2.03754e-4	0.0817766	0.0124395
chr7	64909876	64909975	3321154	0	+	0.333333	(0.32,0.35]	chr7	308781	61	INTRON	INTRON	ZNF273	ENSG00000198039.12	ENST00000527278.5:ENST00000489672.5:ENST00000476120.2:ENST00000395375.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	51	2	4.36755	5.0298099999999994	5.69207	0.0300552	1.29349e-4	0.129138	0.00979769
chr12	69273567	69273666	5163858	0	+	0.353535	(0.35,0.378]	chr12	489054	42	UTR3	UTR3:EXON_MRNA	CPSF6	ENSG00000111605.18	ENST00000435070.7:ENST00000650046.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	154	2	3.32642	5.029805	6.73319	3.39815e-5	2.30714e-6	0.0046443	0.00105685
chr5	154438317	154438416	2755996	0	-	0.414141	(0.408,0.44]	chr5	259913	16	INTRON	INTRON	SAP30L-AS1	ENSG00000245275.8	ENST00000658072.1:ENST00000519727.5:ENST00000652933.1:ENST00000524264.6:ENST00000652895.1:ENST00000501280.4	lncRNA	lncRNA	lncRNA	lncRNA	0	47	2	4.62009	5.029745	5.4394	0.00504155	6.50925e-4	0.0646039	0.0232863
chr7	44646943	44647043	3314692	0	+	0.43	(0.408,0.44]	chr7	307904	1	SS3_PROX	SS3_PROX:INTRON	OGDH	ENSG00000105953.16	ENST00000439616.6:ENST00000443864.6:ENST00000449767.5:ENST00000447398.5:ENST00000419661.5:ENST00000222673.6:ENST00000444676.5	protein_coding	protein_coding	protein_coding	protein_coding	0	47	2	4.62009	5.029745	5.4394	0.00504155	6.50925e-4	0.0646039	0.0232863
chr4	73254778	73254878	2160787	0	-	0.22	[0,0.28]	chr4	212799	318	INTRON	INTRON	ANKRD17	ENSG00000132466.20	ENST00000358602.9:ENST00000558247.5:ENST00000330838.10:ENST00000561029.1	protein_coding	protein_coding	protein_coding	protein_coding	0	51	2	4.71017	5.029535	5.3489	0.0114708	0.00514751	0.0956037	0.062965
chr9	69185304	69185404	4138228	0	+	0.5	(0.476,0.515]	chr9	377084	1	SS5_PROX	SS5_PROX:INTRON	TJP2	ENSG00000119139.21	ENST00000643713.1:ENST00000606364.5:ENST00000648087.1:ENST00000423935.6:ENST00000647986.1:ENST00000636438.1:ENST00000377259.5:ENST00000377245.9:ENST00000348208.9:ENST00000649114.1:ENST00000649943.1:ENST00000636247.1:ENST00000650333.1:ENST00000650522.1:ENST00000649783.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	49	2	4.34648	5.029315	5.71215	0.0193566	5.54639e-5	0.108861	0.00609037
chr9	34041661	34041760	4245779	0	-	0.474747	(0.44,0.476]	chr9	390499	84	INTRON	INTRON	UBAP2	ENSG00000137073.24	ENST00000379238.7:ENST00000683659.1:ENST00000682239.1:ENST00000683140.1:ENST00000682209.1:ENST00000681980.1:ENST00000360802.6:ENST00000683252.1:ENST00000684158.1:ENST00000682914.1:ENST00000683717.1:ENST00000379239.9:ENST00000683084.1:ENST00000684754.1:ENST00000629575.2:ENST00000684298.1:ENST00000480885.5:ENST00000459988.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	45	2	4.76068	5.028955	5.29723	0.00653414	3.83422e-4	0.0699952	0.017699199999999998
chr15	74901255	74901353	6222762	0	-	0.397959	(0.378,0.408]	chr15	594237	14	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	FAM219B	ENSG00000178761.15	ENST00000569524.5:ENST00000357635.10:ENST00000563119.5:ENST00000563671.5:ENST00000566132.5:ENST00000566894.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	282	2	4.69084	5.0288450000000005	5.36685	8.46104e-8	8.38481e-9	1.25981e-4	3.16727e-5
chr2	73249279	73249318	808482	0	+	0.282051	(0.28,0.32]	chr2	90488	1	SS5_PROX	SS5_PROX:INTRON	CCT7	ENSG00000135624.17	ENST00000540468.5:ENST00000539919.5:ENST00000258091.10:ENST00000398422.2:ENST00000473786.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	105	2	4.03338	5.028585	6.02379	2.44054e-4	1.04313e-4	0.0144024	0.00863456
chr19	2043882	2043982	7114656	0	-	0.54	(0.515,0.57]	chr19	715061	3	SS3_PROX	SS3_PROX:INTRON	MKNK2	ENSG00000099875.16	ENST00000309340.11:ENST00000250896.9:ENST00000586828.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	47	2	4.31326	5.02821	5.74316	0.0141817	2.06122e-5	0.0959618	0.00352433
chr19	38405733	38405831	7065495	0	+	0.469388	(0.44,0.476]	chr19	705421	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	FAM98C	ENSG00000130244.13	ENST00000252530.10:ENST00000588262.5:ENST00000588348.5:ENST00000343358.11:ENST00000586372.5:ENST00000592992.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	46	2	4.70355	5.02791	5.35227	0.00383786	8.47974e-4	0.0562562	0.0267232
chr7	56076430	56076527	3319306	0	+	0.453608	(0.44,0.476]	chr7	308568	2	SS3_PROX	SS3_PROX:INTRON	SUMF2	ENSG00000129103.19	ENST00000395436.7:ENST00000651354.1:ENST00000651586.1:ENST00000652303.1:ENST00000275607.13:ENST00000650735.1:ENST00000395435.7:ENST00000342190.11:ENST00000413952.7:ENST00000452216.5:ENST00000436782.5:ENST00000437307.6:ENST00000434526.8:ENST00000413756.5:ENST00000423763.5:ENST00000438133.5:ENST00000447501.5:ENST00000451338.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	46	2	4.70355	5.02791	5.35227	0.00383786	8.47974e-4	0.0562562	0.0267232
chr10	133407547	133407646	4540354	0	+	0.393939	(0.378,0.408]	chr10	419095	44	INTRON	INTRON	MTG1	ENSG00000148824.19	ENST00000477902.6:ENST00000317502.11:ENST00000432508.3:ENST00000460848.5:ENST00000473735.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	45	2	4.9425	5.027825	5.11315	0.00452675	9.26795e-4	0.0595107	0.0278442
chr11	61417883	61417979	4956931	0	-	0.385417	(0.378,0.408]	chr11	465866	10	INTRON	INTRON	CPSF7	ENSG00000149532.16	ENST00000340437.8:ENST00000394888.8:ENST00000439958.8:ENST00000448745.5:ENST00000537641.5:ENST00000477890.6:ENST00000544669.5:ENST00000539952.5:ENST00000535222.5:ENST00000544990.5:ENST00000544585.5:ENST00000413232.5:ENST00000537162.5:ENST00000543545.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	45	2	4.9425	5.027825	5.11315	0.00452675	9.26795e-4	0.0595107	0.0278442
chr7	127987251	127987351	3405774	0	+	0.38	(0.378,0.408]	chr7	318177	377	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000486037.1:ENST00000484767.5:ENST00000492840.1:ENST00000470723.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	45	2	4.9425	5.027825	5.11315	0.00452675	9.26795e-4	0.0595107	0.0278442
chr16	18883869	18883969	6457673	0	-	0.4	(0.378,0.408]	chr16	622840	4	SS5_PROX	SS5_PROX:INTRON	SMG1	ENSG00000157106.18	ENST00000446231.7:ENST00000565324.5:ENST00000561947.5:ENST00000565224.5	protein_coding	protein_coding	protein_coding	protein_coding	0	45	2	5.00459	5.02775	5.05091	0.00371142	0.00118558	0.0535094	0.031662
chr17	19963122	19963222	6741945	0	-	0.29	(0.28,0.32]	chr17	661935	1	SS3_PROX	SS3_PROX:INTRON	AKAP10	ENSG00000108599.15	ENST00000225737.11:ENST00000395536.7:ENST00000582611.5:ENST00000572155.1:ENST00000572341.5:ENST00000576896.5:ENST00000571858.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	48	2	4.80255	5.02698	5.25141	0.0137406	0.00125199	0.0949306	0.0328543
chr19	21104067	21104166	7039737	0	+	0.282828	(0.28,0.32]	chr19	701897	48	INTRON	INTRON	ZNF714	ENSG00000160352.16	ENST00000616183.1:ENST00000596053.5:ENST00000618422.1:ENST00000456283.7:ENST00000613286.4:ENST00000425625.5:ENST00000618008.4:ENST00000610902.4:ENST00000620627.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	48	2	4.80255	5.02698	5.25141	0.0137406	0.00125199	0.0949306	0.0328543
chr1	46359306	46359405	96865	0	+	0.373737	(0.35,0.378]	chr1	13015	59	INTRON	INTRON	NSUN4	ENSG00000117481.11	ENST00000307089.7:ENST00000486270.5:ENST00000474844.6:ENST00000537428.2:ENST00000498008.5:ENST00000495427.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	46	2	4.79079	5.02665	5.26251	0.00846427	6.20882e-4	0.0776969	0.0223951
chr7	92103910	92104007	3352716	0	+	0.360825	(0.35,0.378]	chr7	312456	7	INTRON	INTRON	AKAP9	ENSG00000127914.19	ENST00000680534.1:ENST00000680513.1:ENST00000680072.1:ENST00000679821.1:ENST00000356239.8:ENST00000679521.1:ENST00000680181.1:ENST00000681722.1:ENST00000680766.1:ENST00000679448.1:ENST00000681412.1:ENST00000680047.1:ENST00000679474.1:ENST00000680952.1:ENST00000679457.1:ENST00000359028.7:ENST00000491695.2:ENST00000681216.1:ENST00000680365.1:ENST00000394534.7:ENST00000487692.2:ENST00000487258.5:ENST00000486313.2:ENST00000463118.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	46	2	4.79079	5.02665	5.26251	0.00846427	6.20882e-4	0.0776969	0.0223951
chr11	65172683	65172765	4804347	0	+	0.646341	(0.57,1]	chr11	446214	1	CDS	CDS:EXON_MRNA	SPDYC	ENSG00000204710.3	ENST00000377185.3	protein_coding	protein_coding	protein_coding	protein_coding	3	101	2	3.14704	5.02638	6.90572	4.92991e-5	7.63946e-11	0.00608708	1.10336e-6
chr8	80028896	80028987	3978960	0	-	0.450549	(0.44,0.476]	chr8	364508	1	SS3_PROX	SS3_PROX:INTRON	MRPS28	ENSG00000147586.10	ENST00000276585.9:ENST00000519386.5:ENST00000521434.5:ENST00000521605.1:ENST00000519120.1:ENST00000520946.1:ENST00000518271.1:ENST00000522987.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	49	2	4.43525	5.026375	5.6175	0.00897296	2.84938e-4	0.0849778	0.015495
chr18	23374361	23374459	6957471	0	-	0.367347	(0.35,0.378]	chr18	688203	2	INTRON	INTRON	TMEM241	ENSG00000134490.14	ENST00000581444.5:ENST00000383233.8:ENST00000473688.5:ENST00000477053.5:ENST00000460322.5:ENST00000542162.5:ENST00000578520.5:ENST00000482411.5:ENST00000497608.5:ENST00000577531.5:ENST00000582336.5:ENST00000580025.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	46	2	4.89523	5.02623	5.15723	0.00272706	0.00253947	0.0467523	0.0465056
chr16	16072428	16072528	6309000	0	+	0.41	(0.408,0.44]	chr16	603590	3	INTRON	INTRON	ABCC1	ENSG00000103222.20	ENST00000678422.1:ENST00000677164.1:ENST00000399408.7:ENST00000572882.3:ENST00000399410.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	45	2	4.85872	5.025370000000001	5.19202	0.00221911	0.0016671	0.0435144	0.0369207
chr10	74253723	74253823	4456796	0	+	0.35	(0.32,0.35]	chr10	411553	103	INTRON	INTRON	ADK	ENSG00000156110.15	ENST00000672429.1:ENST00000539909.6:ENST00000286621.7:ENST00000673352.1:ENST00000673310.1:ENST00000672920.1:ENST00000672394.1:ENST00000372734.5:ENST00000673027.1:ENST00000541550.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	47	2	4.86622	5.0251850000000005	5.18415	0.00354075	0.00333629	0.0546236	0.0512081
chr3	160422638	160422733	1544846	0	+	0.378947	(0.378,0.408]	chr3	160739	14	INTRON	INTRON	SMC4	ENSG00000113810.16	ENST00000357388.8:ENST00000469762.5:ENST00000469858.5:ENST00000462787.5:ENST00000344722.5:ENST00000462668.5:ENST00000497203.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	45	2	4.98587	5.0249950000000005	5.06412	0.0030522	0.00152268	0.0493883	0.0360297
chr1	151457565	151457664	554948	0	-	0.606061	(0.57,1]	chr1	65564	25	INTRON	INTRON	POGZ	ENSG00000143442.22	ENST00000271715.7:ENST00000358476.7:ENST00000368863.6:ENST00000409503.5:ENST00000531094.5:ENST00000491586.5:ENST00000485040.5:ENST00000467287.5:ENST00000533351.5:ENST00000476128.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	35	2	4.7773	5.023985	5.27067	5.07088e-4	5.68536e-5	0.0202328	0.00655354
chr3	198185758	198185853	1600016	0	+	0.410526	(0.408,0.44]	chr3	165873	2	SS5_PROX	SS5_PROX:INTRON	FAM157A	ENSG00000236438.7	ENST00000634862.1:ENST00000615155.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	2	139	2	3.909	5.022225	6.13545	1.03919e-5	4.91945e-6	0.00252528	0.00150985
chr11	602974	603071	4719846	0	+	0.56701	(0.515,0.57]	chr11	436210	9	INTRON	INTRON	PHRF1	ENSG00000070047.13	ENST00000264555.10:ENST00000416188.3:ENST00000534320.5:ENST00000413872.6:ENST00000533464.5:ENST00000532550.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	42	2	4.97722	5.020905	5.06459	0.00168681	6.03964e-4	0.0370386	0.0223465
chr6	158560732	158560831	3021605	0	+	0.454545	(0.44,0.476]	chr6	281792	1	INTRON	INTRON	TMEM181	ENSG00000146433.10	ENST00000367090.4:ENST00000684151.1	protein_coding	protein_coding	protein_coding	protein_coding	2	122	2	3.48044	5.020895	6.56135	6.78832e-5	2.36529e-6	0.00682671	0.00107098
chr2	101297970	101298070	1199442	0	-	0.39	(0.378,0.408]	chr2	128179	24	INTRON	INTRON	RNF149	ENSG00000163162.9	ENST00000424632.5:ENST00000295317.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	45	2	4.80968	5.019895	5.23011	0.00679828	5.72873e-4	0.0711802	0.0217398
chr20	47644478	47644578	7282444	0	+	0.38	(0.378,0.408]	chr20	740560	17	INTRON	INTRON	NCOA3	ENSG00000124151.19	ENST00000371998.8:ENST00000372004.7:ENST00000371997.3	protein_coding	protein_coding	protein_coding	protein_coding	0	45	2	4.80968	5.019895	5.23011	0.00679828	5.72873e-4	0.0711802	0.0217398
chr12	113285329	113285388	5232189	0	+	0.525424	(0.515,0.57]	chr12	496205	2	INTRON	INTRON	TPCN1	ENSG00000186815.13	ENST00000550785.5:ENST00000335509.11:ENST00000552077.5:ENST00000541517.5:ENST00000392569.8:ENST00000428632.7:ENST00000546781.5:ENST00000551127.5:ENST00000550543.1:ENST00000547955.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	42	2	4.90912	5.01943	5.12974	0.0021669	4.54392e-4	0.0417866	0.0192381
chr15	41694675	41694775	6007200	0	+	0.54	(0.515,0.57]	chr15	571640	101	INTRON	INTRON	MGA	ENSG00000174197.18	ENST00000566718.6:ENST00000545763.6:ENST00000570161.6:ENST00000566586.6:ENST00000219905.13	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	42	2	4.99635	5.019299999999999	5.04225	0.00131841	8.06602e-4	0.0331539	0.0258804
chr15	68122960	68123060	6056643	0	+	0.24	[0,0.28]	chr15	576567	347	INTRON	INTRON	PIAS1	ENSG00000033800.14	ENST00000564915.5:ENST00000249636.11:ENST00000562190.1:ENST00000545237.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	49	2	4.94561	5.01921	5.09281	0.0150263	0.00372534	0.0994339	0.0561984
chr1	96787646	96787746	168611	0	+	0.22	[0,0.28]	chr1	18249	20	INTRON	INTRON	PTBP2	ENSG00000117569.19	ENST00000482253.5:ENST00000675735.1:ENST00000609116.5:ENST00000674951.1:ENST00000675080.1:ENST00000426398.3:ENST00000370197.5:ENST00000370198.5:ENST00000476419.5:ENST00000676292.1:ENST00000676096.1:ENST00000675365.1:ENST00000674579.1:ENST00000675401.1:ENST00000459735.5:ENST00000476783.5:ENST00000492905.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	49	2	5.00263	5.019155	5.03568	0.013055	0.00446141	0.093385	0.0610799
chrX	72487936	72488035	7835454	0	-	0.313131	(0.28,0.32]	chrX	799327	32	UTR3	UTR3:EXON_MRNA:INTRON	HDAC8	ENSG00000147099.21	ENST00000373583.6:ENST00000373573.9:ENST00000648850.1:ENST00000648452.1:ENST00000649097.1:ENST00000647886.1:ENST00000648855.1:ENST00000647654.1:ENST00000648939.1:ENST00000648504.1:ENST00000648459.1:ENST00000373589.9:ENST00000650604.1:ENST00000647594.1:ENST00000647980.1:ENST00000647859.1:ENST00000650076.1:ENST00000648731.1:ENST00000649181.1:ENST00000649274.1:ENST00000650471.1:ENST00000647641.1:ENST00000649543.1:ENST00000373568.7:ENST00000648139.1:ENST00000648834.1:ENST00000648711.1:ENST00000436675.6:ENST00000647606.1:ENST00000415409.6:ENST00000478743.2:ENST00000648298.1:ENST00000648870.1:ENST00000649116.1:ENST00000649752.1:ENST00000647718.1:ENST00000649242.1:ENST00000649518.1:ENST00000648285.1:ENST00000412342.6:ENST00000373571.6:ENST00000439122.7:ENST00000648962.1:ENST00000650126.1:ENST00000648036.1:ENST00000647974.1:ENST00000373560.7:ENST00000373559.8:ENST00000648577.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	48	2	4.73474	5.018635	5.30253	0.0162835	0.0010319	0.101453	0.0294094
chr6	89789096	89789187	3161725	0	-	0.362637	(0.35,0.378]	chr6	294856	8	INTRON	INTRON	MDN1	ENSG00000112159.12	ENST00000369393.8:ENST00000629399.2:ENST00000439638.1	protein_coding	protein_coding	protein_coding	protein_coding	0	46	2	4.71953	5.017545	5.31556	0.0103314	4.97087e-4	0.0850389	0.0201536
chr3	197125936	197126034	1901764	0	-	0.285714	(0.28,0.32]	chr3	190571	61	INTRON	INTRON	DLG1	ENSG00000075711.21	ENST00000667157.1:ENST00000346964.6:ENST00000656428.1:ENST00000663148.1:ENST00000655488.1:ENST00000357674.9:ENST00000671185.1:ENST00000658701.1:ENST00000667104.1:ENST00000661336.1:ENST00000669565.1:ENST00000670455.1:ENST00000656087.1:ENST00000670366.1:ENST00000653583.1:ENST00000653795.1:ENST00000671246.1:ENST00000661453.1:ENST00000665728.1:ENST00000664564.1:ENST00000653331.1:ENST00000660432.1:ENST00000660898.1:ENST00000657381.1:ENST00000659221.1:ENST00000654737.1:ENST00000669332.1:ENST00000659716.1:ENST00000660553.1:ENST00000664991.1:ENST00000419354.5:ENST00000661440.1:ENST00000667971.1:ENST00000670935.1:ENST00000668578.1:ENST00000666007.1:ENST00000661229.1:ENST00000660237.1:ENST00000657098.1:ENST00000661013.1:ENST00000436682.6:ENST00000452595.5:ENST00000662727.1:ENST00000422288.6:ENST00000448528.6:ENST00000443183.5:ENST00000656944.1:ENST00000392382.6:ENST00000450955.5:ENST00000658155.1:ENST00000669714.1:ENST00000654733.1:ENST00000469073.2:ENST00000419227.5:ENST00000392381.7:ENST00000471733.5:ENST00000419553.6:ENST00000447466.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	168	2	3.34135	5.017435	6.69352	4.61914e-5	1.19428e-5	0.00553779	0.00274631
chr1	118441	118540	352564	0	-	0.262626	[0,0.28]	chr1	40784	53	INTRON	INTRON	ENSG00000238009	ENSG00000238009.6	ENST00000466430.5:ENST00000477740.5:ENST00000471248.1	lncRNA	lncRNA	lncRNA	lncRNA	0	49	2	4.88625	5.017010000000001	5.14777	0.0173315	0.00311898	0.104099	0.0512673
chr10	92508022	92508112	4664736	0	-	0.266667	[0,0.28]	chr10	429836	5	EXON_MRNA	EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	IDE	ENSG00000119912.18	ENST00000265986.11:ENST00000679312.1:ENST00000650060.1:ENST00000679089.1:ENST00000677569.1:ENST00000677096.1:ENST00000679222.1:ENST00000676540.1:ENST00000678026.1:ENST00000676626.1:ENST00000679069.1:ENST00000678977.1:ENST00000679232.1:ENST00000678844.1:ENST00000679174.1:ENST00000678673.1:ENST00000676816.1:ENST00000678715.1:ENST00000678458.1:ENST00000677193.1:ENST00000679304.1:ENST00000677079.1:ENST00000677434.1:ENST00000678248.1:ENST00000478361.6:ENST00000677978.1:ENST00000677196.1:ENST00000677953.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	49	2	4.88625	5.017010000000001	5.14777	0.0173315	0.00311898	0.104099	0.0512673
chr12	50022562	50022661	5322653	0	-	0.262626	[0,0.28]	chr12	507420	10	INTRON	INTRON	RACGAP1	ENSG00000161800.13	ENST00000312377.10:ENST00000427314.6:ENST00000454520.6:ENST00000547905.5:ENST00000548320.5:ENST00000548598.5:ENST00000552310.5:ENST00000550149.5:ENST00000546786.5:ENST00000546595.5:ENST00000551145.5:ENST00000548824.5:ENST00000548644.5:ENST00000551260.5:ENST00000546723.5:ENST00000552921.5:ENST00000548247.1:ENST00000552157.5:ENST00000546764.5:ENST00000549777.5:ENST00000550651.5:ENST00000552004.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	49	2	4.88625	5.017010000000001	5.14777	0.0173315	0.00311898	0.104099	0.0512673
chr14	101871942	101872042	5819615	0	+	0.14	[0,0.28]	chr14	551879	147	INTRON	INTRON	PPP2R5C	ENSG00000078304.20	ENST00000694906.1:ENST00000422945.6:ENST00000328724.9:ENST00000350249.7:ENST00000557621.5:ENST00000556307.5:ENST00000553730.5:ENST00000334743.9:ENST00000445439.7:ENST00000557095.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	49	2	4.88625	5.017010000000001	5.14777	0.0173315	0.00311898	0.104099	0.0512673
chr6	20424524	20424624	2827674	0	+	0.26	[0,0.28]	chr6	265575	203	INTRON	INTRON	E2F3	ENSG00000112242.16	ENST00000346618.8:ENST00000535432.2	protein_coding	protein_coding	protein_coding	protein_coding	0	49	2	4.97619	5.016835	5.05748	0.0113653	0.00535756	0.0886611	0.0663076
chr7	75211578	75211678	3557547	0	-	0.38	(0.378,0.408]	chr7	331373	1	SS5_PROX	SS5_PROX:INTRON	GTF2IP1	ENSG00000277053.4	ENST00000622829.4:ENST00000616377.4:ENST00000614592.4:ENST00000622399.4	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	47	2	4.50056	5.016775	5.53299	0.015974	1.47095e-4	0.101453	0.0105341
chr14	31009051	31009151	5857700	0	-	0.17	[0,0.28]	chr14	556508	447	INTRON	INTRON	STRN3	ENSG00000196792.12	ENST00000355683.9:ENST00000357479.10:ENST00000555358.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	52	2	4.46726	5.016685	5.56611	0.0427997	7.02173e-4	0.148082	0.0241881
chr6	47530504	47530604	2874093	0	+	0.27	[0,0.28]	chr6	272731	267	INTRON	INTRON	CD2AP	ENSG00000198087.7	ENST00000359314.5	protein_coding	protein_coding	protein_coding	protein_coding	0	52	2	4.46726	5.016685	5.56611	0.0427997	7.02173e-4	0.148082	0.0241881
chr2	86159035	86159128	1170788	0	-	0.354839	(0.35,0.378]	chr2	124949	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	IMMT	ENSG00000132305.22	ENST00000449247.6:ENST00000254636.9:ENST00000410111.8:ENST00000442664.6:ENST00000419070.6:ENST00000409051.6:ENST00000474969.5:ENST00000490238.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	103	2	3.84382	5.015795000000001	6.18777	3.33157e-4	6.28074e-6	0.016912	0.00175994
chr5	168509490	168509589	2540660	0	+	0.343434	(0.32,0.35]	chr5	242505	23	INTRON	INTRON	RARS1	ENSG00000113643.9	ENST00000231572.8:ENST00000520013.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	47	2	4.6938	5.015625	5.33745	0.0137794	6.1485e-4	0.0949306	0.0223951
chr6	163541415	163541514	3032981	0	+	0.333333	(0.32,0.35]	chr6	282593	59	INTRON	INTRON	QKI	ENSG00000112531.17	ENST00000361758.8:ENST00000453779.6:ENST00000275262.11:ENST00000392127.6:ENST00000361752.8:ENST00000361195.6:ENST00000424802.7:ENST00000545607.5:ENST00000537041.5:ENST00000544823.5:ENST00000537883.5:ENST00000540719.1:ENST00000544361.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	47	2	4.6938	5.015625	5.33745	0.0137794	6.1485e-4	0.0949306	0.0223951
chr6	26883042	26883142	3071530	0	-	0.48	(0.476,0.515]	chr6	285527	3	SS5_PROX	SS5_PROX:INTRON	GUSBP2	ENSG00000241549.8	ENST00000479900.5:ENST00000463434.5:ENST00000492832.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	44	2	4.97253	5.015499999999999	5.05847	0.00311573	0.00108081	0.0498063	0.0300133
chr10	5975854	5975953	4545846	0	-	0.424242	(0.408,0.44]	chr10	419943	66	INTRON	INTRON	IL15RA	ENSG00000134470.21	ENST00000620345.4:ENST00000397251.7:ENST00000525219.6:ENST00000397248.6:ENST00000379977.8:ENST00000534292.5:ENST00000379972.6:ENST00000532948.5:ENST00000528354.5:ENST00000379974.1:ENST00000397250.6:ENST00000379971.5:ENST00000397246.7:ENST00000397255.7:ENST00000530685.5:ENST00000622442.4:ENST00000620865.4:ENST00000429135.2:ENST00000453922.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	45	2	4.67894	5.014905	5.35087	0.0087648	3.00323e-4	0.0788605	0.0155054
chr5	146236897	146236997	2514454	0	+	0.44	(0.408,0.44]	chr5	240189	2	SS3_PROX	SS3_PROX:INTRON	ENSG00000275740:RBM27	ENSG00000275740.1:ENSG00000091009.8	ENST00000506502.2:ENST00000265271.7	protein_coding	protein_coding	protein_coding	protein_coding	0	45	2	4.67894	5.014905	5.35087	0.0087648	3.00323e-4	0.0788605	0.0155054
chr16	12509819	12509919	6296671	0	+	0.56	(0.515,0.57]	chr16	602480	316	INTRON	INTRON	SNX29	ENSG00000048471.14	ENST00000566228.6:ENST00000564791.5	protein_coding	protein_coding	protein_coding	protein_coding	0	42	2	4.83764	5.0148600000000005	5.19208	0.00279527	3.4344e-4	0.0469265	0.0164987
chr7	148807806	148807906	3669972	0	-	0.36	(0.35,0.378]	chr7	340538	1	SS3_PROX	SS3_PROX:INTRON	EZH2	ENSG00000106462.12	ENST00000683292.1:ENST00000320356.7:ENST00000492143.5:ENST00000478654.5:ENST00000350995.6:ENST00000460911.5:ENST00000684400.1:ENST00000683744.1:ENST00000684510.1:ENST00000682317.1:ENST00000683293.1:ENST00000682263.1:ENST00000684300.1:ENST00000476773.5:ENST00000483967.5:ENST00000684436.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	47	2	4.5655	5.0147200000000005	5.46394	0.0155464	2.60035e-4	0.100909	0.014326
chr4	67621730	67621830	2153635	0	-	0.49	(0.476,0.515]	chr4	212026	22	INTRON	INTRON	UBA6	ENSG00000033178.13	ENST00000322244.10:ENST00000514261.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	44	2	4.90761	5.014165	5.12072	0.00386428	8.42139e-4	0.0542786	0.0263691
chrX	41132533	41132632	7644535	0	+	0.494949	(0.476,0.515]	chrX	782249	6	INTRON	INTRON	USP9X	ENSG00000124486.14	ENST00000324545.9:ENST00000378308.7	protein_coding	protein_coding	protein_coding	protein_coding	0	44	2	4.90761	5.014165	5.12072	0.00386428	8.42139e-4	0.0542786	0.0263691
chr1	148144780	148144879	545438	0	-	0.494949	(0.476,0.515]	chr1	63795	7	INTRON	INTRON	NBPF11	ENSG00000263956.8	ENST00000615281.4:ENST00000682118.1:ENST00000614506.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	44	2	4.99342	5.01404	5.03466	0.00252065	0.00139274	0.0446195	0.0341261
chr16	88750278	88750378	6539872	0	-	0.5	(0.476,0.515]	chr16	633998	4	INTRON	INTRON	PIEZO1	ENSG00000103335.22	ENST00000301015.14	protein_coding	protein_coding	protein_coding	protein_coding	0	44	2	4.99342	5.01404	5.03466	0.00252065	0.00139274	0.0446195	0.0341261
chr16	70525017	70525117	6385145	0	+	0.5	(0.476,0.515]	chr16	613857	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	SF3B3	ENSG00000189091.13	ENST00000566095.6:ENST00000577085.1:ENST00000302516.10:ENST00000567654.1:ENST00000564899.1	protein_coding	protein_coding	protein_coding	protein_coding	3	155	2	3.26855	5.013425	6.7583	6.60703e-5	9.17344e-8	0.0071649	1.31459e-4
chr5	71201752	71201852	2639663	0	-	0.49	(0.476,0.515]	chr5	250871	1	SS5_PROX	SS5_PROX:INTRON	GUSBP9	ENSG00000215630.6	ENST00000510138.2	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	0	47	2	4.44128	5.013365	5.58545	0.0151924	1.04881e-4	0.0994339	0.00863456
chr22	26548709	26548808	7564651	0	-	0.535354	(0.515,0.57]	chr22	774040	7	INTRON	INTRON	TPST2	ENSG00000128294.16	ENST00000338754.9:ENST00000403880.5:ENST00000398110.6:ENST00000442495.5:ENST00000454778.5:ENST00000440953.5:ENST00000453117.1:ENST00000450022.1	protein_coding	protein_coding	protein_coding	protein_coding	0	44	2	4.5963	5.0132449999999995	5.43019	0.00370287	2.60422e-4	0.0561162	0.0148796
chr8	81681187	81681283	3979285	0	-	0.46875	(0.44,0.476]	chr8	364580	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	IMPA1	ENSG00000133731.10	ENST00000256108.10:ENST00000311489.8:ENST00000449740.6:ENST00000523942.5:ENST00000518188.5:ENST00000523710.5:ENST00000519964.5:ENST00000521360.5:ENST00000521979.5:ENST00000522997.5:ENST00000518202.5:ENST00000519816.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	91	2	4.18371	5.012589999999999	5.84147	1.03947e-4	2.6221e-5	0.00915599	0.00402631
chr1	19085465	19085554	385441	0	-	0.47191	(0.44,0.476]	chr1	45622	4	INTRON	INTRON	UBR4	ENSG00000127481.15	ENST00000375254.8:ENST00000375224.1	protein_coding	protein_coding	protein_coding	protein_coding	0	44	2	4.9	5.012565	5.12513	0.00423315	7.96486e-4	0.0572185	0.0258804
chr19	52882283	52882383	7208722	0	-	0.24	[0,0.28]	chr19	731656	3	SS3_PROX	SS3_PROX:INTRON	ZNF320	ENSG00000182986.15	ENST00000673631.1:ENST00000594408.3:ENST00000391781.6:ENST00000600930.1:ENST00000682928.1:ENST00000595635.5:ENST00000597091.5:ENST00000593618.5:ENST00000594741.5:ENST00000597265.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	49	2	4.82433	5.01252	5.20071	0.0200334	0.00261806	0.109608	0.0470772
chr19	49002581	49002679	7088213	0	+	0.469388	(0.44,0.476]	chr19	709457	6	INTRON	INTRON	RUVBL2	ENSG00000183207.14	ENST00000601968.5:ENST00000596837.5:ENST00000595090.6:ENST00000595811.5:ENST00000594017.5:ENST00000596247.5:ENST00000221413.10:ENST00000593570.5:ENST00000640699.1:ENST00000594338.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	44	2	4.99782	5.012425	5.02703	0.00278015	0.0013223	0.0469265	0.0333932
chr9	137637001	137637101	4223652	0	+	0.5	(0.476,0.515]	chr9	388153	1	SS3_PROX	SS3_PROX:INTRON	EHMT1	ENSG00000181090.21	ENST00000462484.5:ENST00000371394.6:ENST00000630754.2:ENST00000460843.6:ENST00000626216.2:ENST00000637593.1:ENST00000629335.2:ENST00000637335.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	47	2	4.526	5.012335	5.49867	0.00699701	4.28561e-4	0.0754576	0.0189958
chr2	70210336	70210435	1152057	0	-	0.272727	[0,0.28]	chr2	123027	10	UTR3	UTR3:EXON_MRNA:INTRON	C2orf42:TIA1	ENSG00000115998.8:ENSG00000116001.17	ENST00000470096.1:ENST00000415783.6:ENST00000433529.7:ENST00000282574.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	49	2	4.91414	5.012235	5.11033	0.00991388	0.0064519	0.0838372	0.0730725
chr7	143896862	143896962	3665437	0	-	0.18	[0,0.28]	chr7	340344	116	INTRON	INTRON	TCAF1	ENSG00000198420.10	ENST00000479870.6:ENST00000355951.2:ENST00000478172.1	protein_coding	protein_coding	protein_coding	protein_coding	0	49	2	4.91414	5.012235	5.11033	0.00991388	0.0064519	0.0838372	0.0730725
chr1	205106559	205106658	622276	0	-	0.40404	(0.378,0.408]	chr1	74008	10	INTRON	INTRON	RBBP5	ENSG00000117222.14	ENST00000367164.1:ENST00000264515.11:ENST00000484379.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	45	2	4.73839	5.0118	5.28521	0.00837252	4.52877e-4	0.0774402	0.0192381
chr19	19659400	19659500	7155062	0	-	0.34	(0.32,0.35]	chr19	723456	4	SS5_PROX	SS5_PROX:INTRON	ATP13A1	ENSG00000105726.17	ENST00000357324.11:ENST00000291503.9:ENST00000474955.5:ENST00000492774.1:ENST00000455627.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	49	2	4.55661	5.011515	5.46642	0.00927858	0.00127669	0.0855292	0.0326395
chr10	80470183	80470283	4476391	0	+	0.48	(0.476,0.515]	chr10	412074	11	INTRON	INTRON	TSPAN14	ENSG00000108219.15	ENST00000429989.7:ENST00000481124.5:ENST00000372158.6:ENST00000372157.6:ENST00000469149.1:ENST00000372164.7:ENST00000341863.10:ENST00000372156.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	46	2	4.61519	5.01144	5.40769	0.00528365	6.23078e-4	0.0656295	0.0229151
chr19	1118810	1118910	7111346	0	-	0.49	(0.476,0.515]	chr19	714349	4	SS5_PROX	SS5_PROX:INTRON	SBNO2	ENSG00000064932.16	ENST00000438103.6:ENST00000361757.8:ENST00000587024.5:ENST00000592222.5:ENST00000590446.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	46	2	4.61519	5.01144	5.40769	0.00528365	6.23078e-4	0.0656295	0.0229151
chr2	130132569	130132668	863598	0	+	0.313131	(0.28,0.32]	chr2	96903	24	INTRON	INTRON	MED15P9	ENSG00000223760.4	ENST00000427638.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	1	105	2	3.71616	5.01141	6.30666	4.76221e-4	7.30494e-5	0.0197443	0.00767614
chr2	24563496	24563595	709981	0	+	0.414141	(0.408,0.44]	chr2	82212	71	INTRON	INTRON	NCOA1	ENSG00000084676.16	ENST00000348332.8:ENST00000496333.5:ENST00000406961.5:ENST00000469850.5:ENST00000405141.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	44	2	4.95817	5.0108	5.06343	0.00372419	0.00101725	0.0535094	0.0293497
chr20	33814751	33814851	7257534	0	+	0.44	(0.408,0.44]	chr20	737292	27	INTRON	INTRON	CHMP4B	ENSG00000101421.4	ENST00000217402.3	protein_coding	protein_coding	protein_coding	protein_coding	0	44	2	4.95817	5.0108	5.06343	0.00372419	0.00101725	0.0535094	0.0293497
chr18	3452981	3453080	6867130	0	+	0.454545	(0.44,0.476]	chr18	680329	2	INTRON	INTRON	TGIF1	ENSG00000177426.22	ENST00000552383.5:ENST00000401449.5:ENST00000550958.5:ENST00000548489.6:ENST00000618001.4:ENST00000549780.5:ENST00000549253.5:ENST00000405385.7:ENST00000407501.6:ENST00000546979.5:ENST00000343820.10:ENST00000551402.1:ENST00000577543.5:ENST00000551541.5:ENST00000345133.9:ENST00000330513.10:ENST00000549546.5	protein_coding	protein_coding	protein_coding	protein_coding	0	46	2	4.5227	5.01074	5.49878	0.0128818	1.52058e-4	0.0926667	0.0106137
chr5	96988753	96988852	2435352	0	+	0.40404	(0.378,0.408]	chr5	234000	17	INTRON	INTRON	LNPEP	ENSG00000113441.16	ENST00000231368.10:ENST00000395770.3	protein_coding	protein_coding	protein_coding	protein_coding	0	46	2	4.69169	5.0106850000000005	5.32968	0.00432302	0.00119786	0.0599409	0.0315806
chr1	147985598	147985698	213373	0	+	0.33	(0.32,0.35]	chr1	23682	153	INTRON	INTRON	GPR89B	ENSG00000188092.15	ENST00000478307.5:ENST00000488165.5:ENST00000314163.12:ENST00000491975.5:ENST00000461786.5:ENST00000488603.5:ENST00000490955.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	46	2	4.95971	5.01055	5.06139	0.00663522	0.00179023	0.0703181	0.0392749
chr5	81304459	81304558	2402601	0	+	0.333333	(0.32,0.35]	chr5	232067	30	UTR5	UTR5:EXON_MRNA:SS3_PROX:INTRON	ZCCHC9	ENSG00000131732.12	ENST00000407610.8:ENST00000507402.5:ENST00000254037.6:ENST00000506458.5:ENST00000380199.9:ENST00000438268.2:ENST00000504502.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	46	2	4.95971	5.01055	5.06139	0.00663522	0.00179023	0.0703181	0.0392749
chr17	40225232	40225332	6609523	0	+	0.35	(0.32,0.35]	chr17	643734	43	INTRON	INTRON	WIPF2	ENSG00000171475.14	ENST00000323571.9:ENST00000583268.1:ENST00000494757.5:ENST00000582781.5:ENST00000585043.5:ENST00000394103.7:ENST00000583130.5:ENST00000584296.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	48	2	4.53988	5.010355000000001	5.48083	0.0202178	3.35843e-4	0.109913	0.0162819
chr2	9545938	9546037	1064393	0	-	0.50505	(0.476,0.515]	chr2	113556	18	INTRON	INTRON	ADAM17	ENSG00000151694.14	ENST00000310823.8:ENST00000648548.1:ENST00000649227.1:ENST00000648857.1:ENST00000647979.1:ENST00000647610.1:ENST00000650116.1:ENST00000647622.1:ENST00000649972.1:ENST00000650241.1:ENST00000618923.2:ENST00000478059.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	44	2	4.83962	5.010005	5.18039	0.00480934	6.58744e-4	0.0602209	0.0232396
chr7	27633442	27633541	3510647	0	-	0.50505	(0.476,0.515]	chr7	327343	6	INTRON	INTRON	HIBADH	ENSG00000106049.9	ENST00000265395.7:ENST00000428288.2:ENST00000425715.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	44	2	4.83962	5.010005	5.18039	0.00480934	6.58744e-4	0.0602209	0.0232396
chr6	26539400	26539500	2838151	0	+	0.45	(0.44,0.476]	chr6	266270	1	SS3_PROX	SS3_PROX:INTRON	HMGN4	ENSG00000182952.5	ENST00000377575.3:ENST00000477243.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	46	2	4.61954	5.00977	5.4	0.00506805	7.02611e-4	0.0646039	0.024224
chr8	47799490	47799590	3944070	0	-	0.46	(0.44,0.476]	chr8	361586	1	SS3_PROX	SS3_PROX:INTRON	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7	protein_coding	protein_coding	protein_coding	protein_coding	0	46	2	4.61954	5.00977	5.4	0.00506805	7.02611e-4	0.0646039	0.024224
chr18	9123479	9123578	6868807	0	+	0.454545	(0.44,0.476]	chr18	680531	4	INTRON	INTRON	NDUFV2	ENSG00000178127.13	ENST00000318388.11:ENST00000400033.1:ENST00000465096.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	290	2	2.83616	5.00945	7.18274	3.32528e-6	4.82303e-8	0.00118585	8.75593e-5
chr7	151505347	151505447	3674780	0	-	0.33	(0.32,0.35]	chr7	341207	68	INTRON	INTRON	RHEB	ENSG00000106615.10	ENST00000262187.10:ENST00000472642.5:ENST00000478470.5:ENST00000496004.5:ENST00000470370.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	46	2	4.89768	5.009335	5.12099	0.00793135	0.00143632	0.076155	0.0347139
chr4	39756239	39756338	1953575	0	+	0.414141	(0.408,0.44]	chr4	195648	1	INTRON	INTRON	UBE2K	ENSG00000078140.14	ENST00000510934.5:ENST00000261427.10:ENST00000438068.6:ENST00000513231.5:ENST00000503368.5:ENST00000445950.2:ENST00000510719.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	44	2	4.99837	5.0093250000000005	5.02028	0.00303216	0.00131369	0.0493883	0.0333932
chr18	9597740	9597839	6946150	0	-	0.323232	(0.32,0.35]	chr18	687037	22	INTRON	INTRON	PPP4R1	ENSG00000154845.16	ENST00000400555.7:ENST00000400556.8:ENST00000285124.12:ENST00000578875.5:ENST00000578178.5:ENST00000583903.5:ENST00000579638.5:ENST00000584074.5:ENST00000579415.5:ENST00000581250.5:ENST00000580745.5:ENST00000582933.5:ENST00000580182.5:ENST00000582240.5:ENST00000581835.1:ENST00000583092.1:ENST00000577779.1:ENST00000580283.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	46	2	4.99922	5.009195	5.01917	0.0055659	0.00223907	0.0648867	0.0435144
chr19	10800526	10800623	7014616	0	+	0.608247	(0.57,1]	chr19	697005	16	INTRON	INTRON	DNM2	ENSG00000079805.19	ENST00000683738.1:ENST00000682285.1:ENST00000355667.11:ENST00000389253.9:ENST00000585892.5:ENST00000359692.10:ENST00000408974.8:ENST00000587830.2:ENST00000587329.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	34	2	4.88998	5.009055	5.12813	4.016e-4	8.62401e-5	0.0185763	0.00783027
chr1	113109543	113109642	188477	0	+	0.575758	(0.57,1]	chr1	20919	14	INTRON	INTRON	LRIG2	ENSG00000198799.12	ENST00000361127.6:ENST00000492207.5:ENST00000466161.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	34	2	4.96336	5.008925	5.05449	2.05554e-4	1.79828e-4	0.0124557	0.0121697
chr15	83473766	83473866	6082244	0	+	0.59	(0.57,1]	chr15	579031	258	INTRON	INTRON	SH3GL3	ENSG00000140600.17	ENST00000492099.1:ENST00000427482.7:ENST00000563901.5:ENST00000324537.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	34	2	4.96336	5.008925	5.05449	2.05554e-4	1.79828e-4	0.0124557	0.0121697
chr12	109962282	109962380	5408032	0	-	0.459184	(0.44,0.476]	chr12	516285	2	INTRON	INTRON	GIT2	ENSG00000139436.22	ENST00000355312.8:ENST00000361006.9:ENST00000457474.6:ENST00000553118.5:ENST00000551209.5:ENST00000550186.5:ENST00000547815.5:ENST00000320063.10:ENST00000551455.5:ENST00000551721.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	44	2	4.92968	5.008135	5.08659	0.00226401	0.00171443	0.0425438	0.0381936
chr17	29411696	29411796	6585849	0	+	0.28	[0,0.28]	chr17	640377	77	INTRON	INTRON	TAOK1	ENSG00000160551.12	ENST00000261716.8:ENST00000583121.5:ENST00000587277.1:ENST00000536202.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	50	2	4.62084	5.0078949999999995	5.39495	0.0313633	0.00133175	0.13151	0.0335129
chr2	158668154	158668253	899287	0	+	0.393939	(0.378,0.408]	chr2	99464	12	INTRON	INTRON	PKP4	ENSG00000144283.23	ENST00000389759.8:ENST00000426248.7:ENST00000389757.7:ENST00000480171.7:ENST00000495123.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	147	2	3.41545	5.007759999999999	6.60007	1.73194e-5	3.11297e-6	0.00316166	0.00125281
chr1	52816729	52816829	104795	0	+	0.29	(0.28,0.32]	chr1	13709	1	SS5_PROX	SS5_PROX:INTRON	ZYG11B	ENSG00000162378.13	ENST00000294353.7	protein_coding	protein_coding	protein_coding	protein_coding	0	47	2	4.92929	5.0077549999999995	5.08622	0.0098607	0.00227525	0.0838128	0.0437013
chr20	34910132	34910231	7261323	0	+	0.292929	(0.28,0.32]	chr20	737659	8	INTRON	INTRON	ACSS2	ENSG00000131069.20	ENST00000481971.5:ENST00000488172.5:ENST00000481284.5:ENST00000475459.6:ENST00000484354.1:ENST00000480274.1:ENST00000477932.5:ENST00000473172.5:ENST00000493805.6:ENST00000480978.5:ENST00000360596.7:ENST00000467019.5:ENST00000253382.5:ENST00000476922.5:ENST00000464399.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	47	2	4.92929	5.0077549999999995	5.08622	0.0098607	0.00227525	0.0838128	0.0437013
chr7	112474831	112474929	3382044	0	+	0.316327	(0.28,0.32]	chr7	316829	16	INTRON	INTRON	IFRD1	ENSG00000006652.15	ENST00000675578.1:ENST00000621379.4:ENST00000005558.8:ENST00000403825.8:ENST00000674915.1:ENST00000674887.1:ENST00000675041.1:ENST00000675717.1:ENST00000535603.5:ENST00000489994.5:ENST00000462155.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	48	2	4.66359	5.00774	5.35189	0.0193496	8.52844e-4	0.108861	0.0264928
chr20	32831424	32831524	7257282	0	+	0.31	(0.28,0.32]	chr20	737257	50	INTRON	INTRON	MAPRE1	ENSG00000101367.9	ENST00000375571.6	protein_coding	protein_coding	protein_coding	protein_coding	0	47	2	4.98872	5.00769	5.02666	0.00838468	0.0027935	0.0774402	0.0488769
chr22	20091034	20091134	7478341	0	+	0.61	(0.57,1]	chr22	762719	2	SS3_PROX	SS3_PROX:INTRON	DGCR8	ENSG00000128191.16	ENST00000383024.6:ENST00000351989.8:ENST00000495826.5:ENST00000407755.1:ENST00000498171.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	37	2	4.44366	5.007625	5.57159	0.00210922	9.47307e-6	0.0425419	0.00236268
chr11	130083014	130083114	4885839	0	+	0.36	(0.35,0.378]	chr11	456911	119	INTRON	INTRON	APLP2	ENSG00000084234.18	ENST00000650012.1:ENST00000533616.5:ENST00000532456.5:ENST00000534761.5:ENST00000338167.10:ENST00000528499.5:ENST00000529701.1:ENST00000526330.5:ENST00000534001.1:ENST00000527702.5:ENST00000534582.5:ENST00000529235.5:ENST00000533713.5:ENST00000533618.5:ENST00000533195.5:ENST00000530132.5:ENST00000533532.5:ENST00000263574.9:ENST00000345598.9:ENST00000278756.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	45	2	4.92355	5.007035	5.09052	0.00573514	0.00123501	0.0657377	0.0326215
chr22	19391208	19391306	7554012	0	-	0.377551	(0.35,0.378]	chr22	772268	23	INTRON	INTRON	HIRA:C22orf39	ENSG00000100084.14:ENSG00000242259.9	ENST00000263208.5:ENST00000340170.8:ENST00000509549.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	45	2	4.98561	5.006965	5.02832	0.00474226	0.00156444	0.0600445	0.0365263
chr11	86066752	86066852	5014820	0	-	0.32	(0.28,0.32]	chr11	473022	348	INTRON	INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000630913.2:ENST00000528398.5:ENST00000356360.9:ENST00000534412.5:ENST00000531558.1:ENST00000531930.5:ENST00000532041.5:ENST00000525162.5:ENST00000528256.1:ENST00000528411.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	187	2	2.76456	5.00679	7.24902	0.00147147	3.12037e-8	0.0348192	6.96497e-5
chr7	152844053	152844152	3451372	0	+	0.414141	(0.408,0.44]	chr7	322567	186	INTRON	INTRON	ACTR3B	ENSG00000133627.18	ENST00000377776.7:ENST00000256001.13:ENST00000397282.2:ENST00000479402.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	46	2	4.62009	5.006645000000001	5.3932	0.00504155	7.81492e-4	0.0646039	0.0257168
chr5	32591687	32591785	2334815	0	+	0.459184	(0.44,0.476]	chr5	225362	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	SUB1	ENSG00000113387.12	ENST00000506237.5:ENST00000512913.5:ENST00000513013.5:ENST00000265073.9:ENST00000511615.5:ENST00000515355.5:ENST00000502897.5:ENST00000504789.5:ENST00000504016.1:ENST00000511175.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	147	2	3.06553	5.00577	6.94601	1.35514e-4	2.26532e-7	0.0100405	2.45719e-4
chr16	8825694	8825794	6284944	0	+	0.24	[0,0.28]	chr16	601851	122	INTRON	INTRON	PMM2	ENSG00000140650.13	ENST00000566983.5:ENST00000683435.1:ENST00000683094.1:ENST00000566604.5:ENST00000570134.5:ENST00000268261.9:ENST00000683274.1:ENST00000682393.1:ENST00000566540.5:ENST00000562318.5:ENST00000570076.5:ENST00000569958.5:ENST00000565221.5:ENST00000567697.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	49	2	4.75964	5.0057100000000005	5.25178	0.0232081	0.0022031	0.118148	0.0435144
chr3	15714309	15714393	1622976	0	-	0.27381	[0,0.28]	chr3	167964	3	SS5_PROX	SS5_PROX:INTRON	ANKRD28	ENSG00000206560.12	ENST00000399451.6:ENST00000624145.3:ENST00000683139.1:ENST00000412318.5:ENST00000497037.5:ENST00000451422.1:ENST00000498524.5:ENST00000492895.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	49	2	4.75964	5.0057100000000005	5.25178	0.0232081	0.0022031	0.118148	0.0435144
chr2	44211709	44211808	764990	0	+	0.353535	(0.35,0.378]	chr2	86699	20	INTRON	INTRON	PPM1B	ENSG00000138032.21	ENST00000419807.5:ENST00000282412.9:ENST00000378540.8:ENST00000378551.6:ENST00000409432.7:ENST00000345249.8:ENST00000409473.2:ENST00000459690.5:ENST00000487286.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	46	2	4.64457	5.005649999999999	5.3667299999999996	0.012652	3.99274e-4	0.0926667	0.0179401
chr21	43072301	43072401	7468134	0	-	0.5	(0.476,0.515]	chr21	761079	1	SS3_PROX	SS3_PROX:INTRON	CBS	ENSG00000160200.18	ENST00000352178.9:ENST00000359624.7:ENST00000398165.8:ENST00000398158.5:ENST00000441030.5:ENST00000470912.5:ENST00000465732.5:ENST00000488526.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	45	2	4.61402	5.005555	5.39709	0.00947755	2.55871e-4	0.0817766	0.0142249
chr10	87878847	87878925	4483081	0	+	0.294872	(0.28,0.32]	chr10	412550	3	EXON_MRNA	EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PTEN	ENSG00000171862.12	ENST00000688308.1:ENST00000693560.1:ENST00000371953.8:ENST00000688158.1:ENST00000686459.1:ENST00000462694.1:ENST00000416679.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	47	2	4.86731	5.00536	5.14341	0.0116253	0.00185891	0.0889104	0.039946
chr1	96771671	96771770	168446	0	+	0.212121	[0,0.28]	chr1	18234	3	INTRON	INTRON	PTBP2	ENSG00000117569.19	ENST00000482253.5:ENST00000675735.1:ENST00000609116.5:ENST00000674951.1:ENST00000675080.1:ENST00000426398.3:ENST00000370197.5:ENST00000370198.5:ENST00000476419.5:ENST00000676292.1:ENST00000676096.1:ENST00000675365.1:ENST00000674579.1:ENST00000675401.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	49	2	4.84931	5.005305	5.1613	0.00866441	0.00779241	0.0787356	0.0787025
chr6	167016945	167017044	3033546	0	+	0.222222	[0,0.28]	chr6	282656	30	INTRON	INTRON	CEP43	ENSG00000213066.13	ENST00000622353.4:ENST00000366847.9:ENST00000349556.4	protein_coding	protein_coding	protein_coding	protein_coding	0	49	2	4.84931	5.005305	5.1613	0.00866441	0.00779241	0.0787356	0.0787025
chrX	136920349	136920447	7727571	0	+	0.581633	(0.57,1]	chrX	790760	58	INTRON	INTRON	TM9SF5P	ENSG00000234062.9	ENST00000650669.2:ENST00000687469.1:ENST00000431464.6:ENST00000685550.1:ENST00000685929.1:ENST00000424306.5:ENST00000687978.1:ENST00000688713.1:ENST00000693626.1:ENST00000686432.1:ENST00000693698.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	35	2	4.67443	5.005255	5.33608	8.07515e-4	3.92497e-5	0.0258804	0.00533644
chr10	63216706	63216806	4632891	0	-	0.29	(0.28,0.32]	chr10	426202	1	SS5_PROX	SS5_PROX:INTRON	JMJD1C	ENSG00000171988.20	ENST00000399262.7:ENST00000402544.5:ENST00000542921.5:ENST00000469152.5:ENST00000489372.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	139	2	3.39009	5.00517	6.62025	1.74666e-4	1.70645e-5	0.0114806	0.00330681
chr1	161168820	161168892	234087	0	+	0.430556	(0.408,0.44]	chr1	28075	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PPOX	ENSG00000143224.18	ENST00000352210.9:ENST00000367999.9:ENST00000497522.5:ENST00000470607.5:ENST00000651150.1:ENST00000539753.5:ENST00000652182.1:ENST00000652473.1:ENST00000544598.5:ENST00000495483.5:ENST00000535223.5:ENST00000462866.5:ENST00000652103.1:ENST00000650741.1:ENST00000652297.1:ENST00000494216.1:ENST00000462977.1:ENST00000460611.1:ENST00000537523.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	44	2	4.93024	5.005035	5.07983	0.00247652	0.00170369	0.0446195	0.0381936
chr20	32516232	32516331	7326222	0	-	0.414141	(0.408,0.44]	chr20	746111	44	INTRON	INTRON	NOL4L	ENSG00000197183.15	ENST00000621426.7:ENST00000375678.7:ENST00000201961.6:ENST00000419612.1	protein_coding	protein_coding	protein_coding	protein_coding	0	44	2	4.93024	5.005035	5.07983	0.00247652	0.00170369	0.0446195	0.0381936
chr9	37570927	37571027	4251636	0	-	0.42	(0.408,0.44]	chr9	391555	288	INTRON	INTRON	FBXO10	ENSG00000147912.13	ENST00000432825.7:ENST00000276960.7:ENST00000541607.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	44	2	4.93024	5.005035	5.07983	0.00247652	0.00170369	0.0446195	0.0381936
chr7	102091474	102091574	3369110	0	+	0.48	(0.476,0.515]	chr7	315245	207	INTRON	INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000497815.5:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000558469.5:ENST00000560541.5:ENST00000558836.5:ENST00000606749.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	45	2	4.69918	5.00488	5.31058	0.00400966	9.15544e-4	0.057767	0.0278396
chr3	5140261	5140361	1353755	0	+	0.42	(0.408,0.44]	chr3	142361	113	INTRON	INTRON	ARL8B	ENSG00000134108.14	ENST00000429403.5:ENST00000256496.8:ENST00000455168.5:ENST00000444332.1:ENST00000419534.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	48	2	4.33238	5.004265	5.67615	0.0218901	6.28788e-5	0.11491	0.00658818
chr7	107458224	107458324	3611967	0	-	0.37	(0.35,0.378]	chr7	336694	452	INTRON	INTRON	COG5	ENSG00000164597.15	ENST00000297135.9:ENST00000347053.8:ENST00000393603.7:ENST00000484237.5:ENST00000475638.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	45	2	4.9633	5.0042100000000005	5.04512	0.00393262	0.00198929	0.0548259	0.0411469
chr14	90788125	90788225	5951463	0	-	0.52	(0.515,0.57]	chr14	565050	14	INTRON	INTRON	TTC7B	ENSG00000165914.15	ENST00000328459.11:ENST00000553948.1	protein_coding	protein_coding	protein_coding	protein_coding	1	87	2	4.06976	5.0037	5.93764	5.5596e-5	6.58036e-6	0.00651834	0.00181159
chr2	55662326	55662426	1125439	0	-	0.47	(0.44,0.476]	chr2	120770	3	SS3_PROX	SS3_PROX:INTRON	PNPT1	ENSG00000138035.15	ENST00000447944.7:ENST00000415374.5:ENST00000260604.8:ENST00000415489.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	45	2	4.70355	5.0032250000000005	5.3029	0.00383786	0.00102616	0.0562562	0.029231300000000002
chr17	75206682	75206779	6674265	0	+	0.494845	(0.476,0.515]	chr17	651337	5	INTRON	INTRON	NUP85	ENSG00000125450.11	ENST00000583569.5:ENST00000245544.9:ENST00000583948.5:ENST00000579324.5:ENST00000582833.5:ENST00000449421.6:ENST00000581104.5:ENST00000579298.5:ENST00000583548.1:ENST00000577208.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	44	2	4.76827	5.00298	5.23769	0.00600704	5.17244e-4	0.0674604	0.0203753
chr8	100299728	100299827	4004322	0	-	0.343434	(0.32,0.35]	chr8	366469	111	INTRON	INTRON	RNF19A	ENSG00000034677.13	ENST00000519449.5:ENST00000341084.7:ENST00000519527.5:ENST00000523167.1:ENST00000522369.5:ENST00000517584.5:ENST00000432381.2:ENST00000523481.5	protein_coding	protein_coding	protein_coding	protein_coding	0	47	2	4.61889	5.002865	5.38684	0.0166646	5.01164e-4	0.102621	0.020217099999999998
chr19	47140041	47140140	7083961	0	+	0.454545	(0.44,0.476]	chr19	708741	41	INTRON	INTRON	SAE1	ENSG00000142230.13	ENST00000594144.5:ENST00000594526.5:ENST00000597808.5:ENST00000413379.7:ENST00000600706.5:ENST00000270225.12:ENST00000598840.5:ENST00000414294.6:ENST00000600753.1:ENST00000660039.1:ENST00000664120.1:ENST00000596995.1:ENST00000392776.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	44	2	4.85817	5.000975	5.14378	0.00223254	0.00184943	0.0435144	0.0388609
chr1	17047675	17047775	384578	0	-	0.42	(0.408,0.44]	chr1	45423	24	INTRON	INTRON	SDHB	ENSG00000117118.10	ENST00000375499.8:ENST00000485515.5:ENST00000463045.2:ENST00000466613.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	45	2	4.59979	5.000935	5.40208	0.0109537	2.37882e-4	0.0873034	0.0136195
chr17	2623227	2623327	6547733	0	+	0.42	(0.408,0.44]	chr17	635219	90	INTRON	INTRON	PAFAH1B1	ENSG00000007168.14	ENST00000576586.5:ENST00000397195.10:ENST00000676201.1:ENST00000575477.5:ENST00000675621.1:ENST00000676353.1:ENST00000674717.1:ENST00000675202.1:ENST00000675764.1:ENST00000674608.1:ENST00000676077.1:ENST00000676098.1:ENST00000572915.6:ENST00000570400.1:ENST00000571289.1:ENST00000675430.1:ENST00000675331.1:ENST00000676188.1:ENST00000574816.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	45	2	4.59979	5.000935	5.40208	0.0109537	2.37882e-4	0.0873034	0.0136195
chrX	154062545	154062645	7912745	0	-	0.4	(0.378,0.408]	chrX	805631	23	INTRON	INTRON	MECP2	ENSG00000169057.24	ENST00000303391.11:ENST00000453960.7:ENST00000628176.2:ENST00000407218.5:ENST00000369957.5:ENST00000631210.1:ENST00000496908.5:ENST00000415944.3:ENST00000630151.2:ENST00000676382.1:ENST00000611468.2:ENST00000637533.1:ENST00000675526.1:ENST00000637791.1:ENST00000675841.1:ENST00000674996.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	45	2	4.66338	5.000835	5.33829	0.0103469	3.59275e-4	0.0850389	0.0169207
chr17	39382086	39382186	6766457	0	-	0.32	(0.28,0.32]	chr17	665497	385	INTRON	INTRON	FBXL20	ENSG00000108306.13	ENST00000264658.11:ENST00000583610.5:ENST00000394294.7:ENST00000577399.5:ENST00000647139.1	protein_coding	protein_coding	protein_coding	protein_coding	0	47	2	4.80255	5.000484999999999	5.19842	0.0137406	0.00152333	0.0949306	0.0360297
chr11	62798438	62798538	4961361	0	-	0.3	(0.28,0.32]	chr11	466913	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	NXF1	ENSG00000162231.14	ENST00000531709.6:ENST00000294172.7:ENST00000532297.5:ENST00000530875.5:ENST00000531872.5:ENST00000531579.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	47	2	4.89962	5.0001549999999995	5.10069	0.00610574	0.00425206	0.0676501	0.0595557
chr16	18871079	18871171	6457533	0	-	0.293478	(0.28,0.32]	chr16	622804	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SMG1	ENSG00000157106.18	ENST00000446231.7:ENST00000565324.5:ENST00000563235.5:ENST00000568038.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	47	2	4.89962	5.0001549999999995	5.10069	0.00610574	0.00425206	0.0676501	0.0595557
chr16	53182115	53182215	6351995	0	+	0.3	(0.28,0.32]	chr16	609688	242	INTRON	INTRON	CHD9	ENSG00000177200.18	ENST00000447540.6:ENST00000566029.5:ENST00000615216.4:ENST00000565832.5:ENST00000564845.5:ENST00000398510.7:ENST00000564255.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	47	2	4.89962	5.0001549999999995	5.10069	0.00610574	0.00425206	0.0676501	0.0595557
chr2	39056401	39056501	1101687	0	-	0.3	(0.28,0.32]	chr2	118285	3	SS5_PROX	SS5_PROX:INTRON	SOS1	ENSG00000115904.15	ENST00000692089.1:ENST00000402219.8:ENST00000690876.1:ENST00000395038.6:ENST00000691229.1:ENST00000689668.1:ENST00000690679.1:ENST00000461545.2:ENST00000685782.1:ENST00000688189.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	47	2	4.89962	5.0001549999999995	5.10069	0.00610574	0.00425206	0.0676501	0.0595557
chr20	56380334	56380433	7358761	0	-	0.333333	(0.32,0.35]	chr20	750346	64	INTRON	INTRON	AURKA	ENSG00000087586.18	ENST00000395914.5:ENST00000395913.7:ENST00000312783.10:ENST00000395911.5:ENST00000395915.8:ENST00000347343.6:ENST00000371356.6:ENST00000395907.5:ENST00000441357.5	protein_coding	protein_coding	protein_coding	protein_coding	0	46	2	4.76501	4.999140000000001	5.23327	0.0114287	9.33826e-4	0.0886611	0.0278746
chr3	158137597	158137697	1538553	0	+	0.36	(0.35,0.378]	chr3	160273	8	INTRON	INTRON	RSRC1	ENSG00000174891.14	ENST00000480820.5:ENST00000494002.5:ENST00000295930.7:ENST00000471994.5:ENST00000683733.1:ENST00000682221.1:ENST00000683831.1:ENST00000683516.1:ENST00000482822.3:ENST00000476899.6:ENST00000464171.5:ENST00000611884.5:ENST00000682164.1:ENST00000684604.1:ENST00000683899.1:ENST00000682500.1:ENST00000684683.1:ENST00000684512.1:ENST00000683394.1:ENST00000684156.1:ENST00000312179.10:ENST00000475278.6:ENST00000480119.5:ENST00000471911.5:ENST00000683137.1:ENST00000477788.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	45	2	4.89523	4.9987449999999995	5.10226	0.00327038	0.00253947	0.0508595	0.0465056
chr1	40280019	40280119	81001	0	+	0.33	(0.32,0.35]	chr1	10503	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	ZMPSTE24	ENSG00000084073.10	ENST00000675937.1:ENST00000674703.1:ENST00000372759.4:ENST00000675754.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	46	2	4.86622	4.998725	5.13123	0.00394704	0.00354075	0.0548259	0.0546236
chrX	9548366	9548466	7619492	0	+	0.35	(0.32,0.35]	chrX	779959	47	INTRON	INTRON	TBL1X	ENSG00000101849.18	ENST00000407597.7:ENST00000380961.5:ENST00000424279.6:ENST00000645353.2:ENST00000422314.5:ENST00000645686.1:ENST00000646640.1:ENST00000647172.1:ENST00000452824.5:ENST00000415293.6:ENST00000683056.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	46	2	4.86622	4.998725	5.13123	0.00394704	0.00354075	0.0548259	0.0546236
chr15	82497791	82497891	6247227	0	-	0.43	(0.408,0.44]	chr15	596152	195	INTRON	INTRON	GOLGA2P10	ENSG00000255769.7	ENST00000618004.4:ENST00000614347.4:ENST00000618267.4:ENST00000612379.4:ENST00000619738.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	44	2	4.75398	4.998325	5.24267	0.00703931	4.83767e-4	0.0718189	0.0199261
chr19	21456093	21456192	7158765	0	-	0.242424	[0,0.28]	chr19	723692	42	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ENSG00000268119	ENSG00000268119.7	ENST00000596705.5:ENST00000597444.6:ENST00000594557.1:ENST00000599993.7:ENST00000600469.7:ENST00000656526.1:ENST00000663704.1:ENST00000593653.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	4	206	2	3.07102	4.997955	6.92489	1.04921e-4	1.34406e-5	0.00863456	0.00289395
chr15	90196760	90196860	6098053	0	+	0.43	(0.408,0.44]	chr15	580416	33	INTRON	INTRON	SEMA4B	ENSG00000185033.15	ENST00000559322.5:ENST00000559300.5:ENST00000561085.1:ENST00000332496.10:ENST00000558895.5:ENST00000559792.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	44	2	4.85872	4.99787	5.13702	0.00221911	0.00202889	0.0435144	0.04086
chr8	23432825	23432925	3925735	0	-	0.41	(0.408,0.44]	chr8	359305	38	UTR3	UTR3:EXON_MRNA:INTRON	ENTPD4	ENSG00000197217.13	ENST00000356206.10:ENST00000518471.5:ENST00000521321.5:ENST00000358689.9:ENST00000522255.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	91	2	4.26816	4.997574999999999	5.72699	1.93446e-4	1.58618e-5	0.0127226	0.00300937
chr20	41576640	41576740	7344127	0	-	0.49	(0.476,0.515]	chr20	748566	121	INTRON	INTRON	CHD6	ENSG00000124177.16	ENST00000373233.8:ENST00000373222.3:ENST00000482596.1:ENST00000440647.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	95	2	3.89433	4.997085	6.09984	1.98377e-4	6.54592e-6	0.0129156	0.00180994
chr1	51248170	51248270	98296	0	+	0.39	(0.378,0.408]	chr1	13196	109	INTRON	INTRON	RNF11	ENSG00000123091.5	ENST00000242719.4:ENST00000494873.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	123	2	3.83604	4.99611	6.15618	3.2917e-5	8.26408e-6	0.00483774	0.00207261
chr19	48120951	48121049	7197285	0	-	0.387755	(0.378,0.408]	chr19	729420	9	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	LIG1	ENSG00000105486.14	ENST00000263274.12:ENST00000536218.5:ENST00000427526.6:ENST00000594759.5:ENST00000594067.5:ENST00000601091.5:ENST00000613670.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	44	2	4.87762	4.995385000000001	5.11315	0.00553849	9.26795e-4	0.0648867	0.0278442
chr5	176970207	176970296	2776568	0	-	0.393258	(0.378,0.408]	chr5	261563	4	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	UIMC1	ENSG00000087206.17	ENST00000377227.8:ENST00000511320.6:ENST00000506128.5:ENST00000512031.5:ENST00000510698.2:ENST00000509236.5:ENST00000417486.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	44	2	4.87762	4.995385000000001	5.11315	0.00553849	9.26795e-4	0.0648867	0.0278442
chr4	107990663	107990763	2017815	0	+	0.39	(0.378,0.408]	chr4	200622	2	INTRON	INTRON	HADH	ENSG00000138796.18	ENST00000603302.5:ENST00000505878.4:ENST00000639335.1:ENST00000639146.1:ENST00000640752.2:ENST00000507260.3:ENST00000640201.2:ENST00000682197.1:ENST00000638621.1:ENST00000511742.1:ENST00000639013.1:ENST00000684696.1:ENST00000309522.8:ENST00000403312.6:ENST00000681992.1:ENST00000640060.1:ENST00000638559.1:ENST00000682373.1:ENST00000640586.1:ENST00000639698.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	92	2	3.83447	4.995325	6.15618	1.86403e-4	3.2917e-5	0.0119078	0.00483774
chr11	118574879	118574978	4873106	0	+	0.393939	(0.378,0.408]	chr11	455175	7	INTRON	INTRON	ARCN1	ENSG00000095139.15	ENST00000392859.7:ENST00000264028.5:ENST00000359415.8:ENST00000534182.2	protein_coding	protein_coding	protein_coding	protein_coding	0	44	2	4.98587	4.99523	5.00459	0.00371142	0.00152268	0.0535094	0.0360297
chr17	59884260	59884360	6803010	0	-	0.38	(0.378,0.408]	chr17	671935	2	SS5_PROX	SS5_PROX:INTRON	TUBD1	ENSG00000108423.15	ENST00000325752.8:ENST00000613721.4:ENST00000346141.10:ENST00000340993.10:ENST00000394239.7:ENST00000376094.8:ENST00000592426.5:ENST00000539018.5:ENST00000591548.5:ENST00000593110.5:ENST00000591611.5:ENST00000590498.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	44	2	4.98587	4.99523	5.00459	0.00371142	0.00152268	0.0535094	0.0360297
chr5	109398041	109398141	2702253	0	-	0.38	(0.378,0.408]	chr5	254366	69	INTRON	INTRON	PJA2	ENSG00000198961.10	ENST00000361189.7:ENST00000511624.1:ENST00000512822.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	44	2	4.98587	4.99523	5.00459	0.00371142	0.00152268	0.0535094	0.0360297
chr4	888055	888154	2093835	0	-	0.535354	(0.515,0.57]	chr4	206923	24	EXON_MRNA	EXON_MRNA:INTRON	GAK	ENSG00000178950.18	ENST00000314167.9:ENST00000511163.5:ENST00000504435.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	82	2	4.13835	4.9936799999999995	5.84901	3.33916e-5	2.53131e-5	0.00487221	0.00394111
chr6	10899835	10899933	2811875	0	+	0.306122	(0.28,0.32]	chr6	264568	6	INTRON	INTRON	SYCP2L	ENSG00000153157.13	ENST00000341041.8:ENST00000283141.11:ENST00000543878.5:ENST00000487561.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	48	2	4.68527	4.993399999999999	5.30153	0.00819419	0.00332518	0.0810802	0.0512081
chr11	9503555	9503654	4730529	0	+	0.30303	(0.28,0.32]	chr11	438046	19	INTRON	INTRON	ZNF143	ENSG00000166478.10	ENST00000396604.5:ENST00000530463.5:ENST00000396597.7:ENST00000396602.7:ENST00000299606.6	protein_coding	protein_coding	protein_coding	protein_coding	0	47	2	4.73474	4.993075	5.25141	0.0162835	0.00125199	0.101453	0.0328543
chr1	77737040	77737136	493915	0	-	0.229167	[0,0.28]	chr1	58434	5	INTRON	INTRON	USP33	ENSG00000077254.14	ENST00000370794.7:ENST00000370793.5:ENST00000357428.5:ENST00000370792.7:ENST00000524536.5	protein_coding	protein_coding	protein_coding	protein_coding	0	50	2	4.5461	4.99289	5.43968	0.0365918	0.00113119	0.138959	0.0308465
chr17	30516067	30516166	6589455	0	+	0.222222	[0,0.28]	chr17	640823	48	INTRON	INTRON	GOSR1	ENSG00000108587.16	ENST00000225724.9:ENST00000451249.7:ENST00000427274.6:ENST00000467337.6:ENST00000581721.5:ENST00000414833.2:ENST00000494918.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	50	2	4.5461	4.99289	5.43968	0.0365918	0.00113119	0.138959	0.0308465
chr1	9555802	9555902	17296	0	+	0.51	(0.476,0.515]	chr1	1576	16	INTRON	INTRON	SLC25A33	ENSG00000171612.7	ENST00000302692.7	protein_coding	protein_coding	protein_coding	protein_coding	0	44	2	4.77856	4.9925049999999995	5.20645	0.00305743	0.00136049	0.0509893	0.0336321
chr12	122113258	122113358	5240207	0	+	0.51	(0.476,0.515]	chr12	497496	336	INTRON	INTRON	MLXIP	ENSG00000175727.14	ENST00000319080.12	protein_coding	protein_coding	protein_coding	protein_coding	0	44	2	4.77856	4.9925049999999995	5.20645	0.00305743	0.00136049	0.0509893	0.0336321
chr21	43064069	43064148	7468041	0	-	0.493671	(0.476,0.515]	chr21	761046	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	CBS	ENSG00000160200.18	ENST00000352178.9:ENST00000359624.7:ENST00000398165.8:ENST00000398158.5:ENST00000461686.5:ENST00000496485.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	44	2	4.77856	4.9925049999999995	5.20645	0.00305743	0.00136049	0.0509893	0.0336321
chr9	4814370	4814470	4095080	0	+	0.53	(0.515,0.57]	chr9	373155	208	INTRON	INTRON	RCL1	ENSG00000120158.12	ENST00000381750.9:ENST00000381732.3:ENST00000442869.5:ENST00000473230.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	82	2	4.17103	4.99161	5.81219	4.05175e-5	2.07632e-5	0.00539487	0.00353137
chr15	58609916	58610011	6192099	0	-	0.315789	(0.28,0.32]	chr15	589893	9	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	ADAM10	ENSG00000137845.15	ENST00000260408.8:ENST00000402627.5:ENST00000561288.1:ENST00000482945.5:ENST00000396136.6:ENST00000470269.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	196	2	3.45947	4.991285	6.5231	2.71213e-5	6.98514e-6	0.00430583	0.00187943
chr13	108229770	108229860	5534725	0	+	0.388889	(0.378,0.408]	chr13	529093	6	CDS	CDS:EXON_MRNA	ABHD13	ENSG00000139826.6	ENST00000375898.4	protein_coding	protein_coding	protein_coding	protein_coding	0	44	2	4.80968	4.991245	5.17281	0.00679828	7.27294e-4	0.0711802	0.0245647
chrX	123867940	123868040	7716265	0	+	0.39	(0.378,0.408]	chrX	789403	70	INTRON	INTRON	XIAP	ENSG00000101966.13	ENST00000422098.5:ENST00000481776.5:ENST00000434753.7:ENST00000497906.5:ENST00000468691.5:ENST00000430625.1:ENST00000371199.8:ENST00000497640.1:ENST00000355640.3:ENST00000468503.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	44	2	4.80968	4.991245	5.17281	0.00679828	7.27294e-4	0.0711802	0.0245647
chr1	30989502	30989602	412127	0	-	0.39	(0.378,0.408]	chr1	49701	75	INTRON	INTRON	PUM1	ENSG00000134644.16	ENST00000426105.7:ENST00000373747.7:ENST00000257075.9:ENST00000424085.6:ENST00000525843.5:ENST00000440538.6:ENST00000498419.5:ENST00000373741.8:ENST00000373742.6:ENST00000532678.1:ENST00000526215.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	91	2	3.96977	4.991125	6.01248	9.19167e-5	6.62964e-5	0.00801007	0.00717086
chr12	79775435	79775533	5374893	0	-	0.306122	(0.28,0.32]	chr12	512630	20	UTR3	UTR3:EXON_MRNA	PPP1R12A	ENSG00000058272.19	ENST00000261207.9:ENST00000450142.7:ENST00000437004.6	protein_coding	protein_coding	protein_coding	protein_coding	3	165	2	3.16884	4.991125	6.81341	1.20164e-4	6.5706e-6	0.00938389	0.00194043
chr6	3067699	3067798	2788099	0	+	0.383838	(0.378,0.408]	chr6	263285	26	INTRON	INTRON	RIPK1	ENSG00000137275.16	ENST00000678809.1:ENST00000678874.1:ENST00000380409.3:ENST00000677799.1:ENST00000677261.1:ENST00000676758.1:ENST00000676995.1:ENST00000679118.1:ENST00000479389.1:ENST00000676591.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	44	2	4.91776	4.99094	5.06412	0.0030522	0.00196368	0.0493883	0.0411469
chr7	119688559	119688659	3628222	0	-	0.4	(0.378,0.408]	chr7	337315	1881	INTRON	INTRON	LINC02476	ENSG00000225546.6	ENST00000660268.1	lncRNA	lncRNA	lncRNA	lncRNA	0	44	2	4.91776	4.99094	5.06412	0.0030522	0.00196368	0.0493883	0.0411469
chr2	113480226	113480325	853906	0	+	0.464646	(0.44,0.476]	chr2	95830	88	INTRON	INTRON	CBWD2	ENSG00000136682.16	ENST00000259199.9:ENST00000416503.6:ENST00000358604.7:ENST00000456188.5:ENST00000479583.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	44	2	4.78293	4.990865	5.1988	0.00292033	0.00151532	0.0494641	0.0352794
chr10	74016131	74016231	4454681	0	+	0.28	[0,0.28]	chr10	411385	174	INTRON	INTRON	VCL	ENSG00000035403.18	ENST00000623461.3:ENST00000372755.7:ENST00000624354.3:ENST00000211998.10:ENST00000478896.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	48	2	4.94561	4.990645000000001	5.03568	0.0150263	0.00446141	0.0994339	0.0610799
chr9	94294877	94294974	4161781	0	+	0.237113	[0,0.28]	chr9	379457	15	UTR3	UTR3:EXON_MRNA:INTRON	ZNF169	ENSG00000175787.17	ENST00000395395.7:ENST00000340911.8:ENST00000480716.1	protein_coding	protein_coding	protein_coding	protein_coding	0	48	2	4.94561	4.990645000000001	5.03568	0.0150263	0.00446141	0.0994339	0.0610799
chr5	163438575	163438665	2531025	0	+	0.366667	(0.35,0.378]	chr5	242122	4	INTRON	INTRON	CCNG1	ENSG00000113328.19	ENST00000512163.5:ENST00000393929.5:ENST00000506186.1:ENST00000340828.7:ENST00000510097.5:ENST00000511490.4:ENST00000510664.5:ENST00000511683.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	45	2	4.82377	4.9905	5.15723	0.00325499	0.00272706	0.0524329	0.0467523
chr1	1658247	1658330	360611	0	-	0.578313	(0.57,1]	chr1	41965	4	INTRON	INTRON	CDK11B	ENSG00000248333.9	ENST00000341832.11:ENST00000407249.7:ENST00000340677.9:ENST00000611150.3:ENST00000615951.4:ENST00000626918.2:ENST00000629289.2:ENST00000629312.2:ENST00000341028.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	34	2	4.7773	4.989725	5.20215	5.07088e-4	8.28896e-5	0.0202328	0.00812487
chr5	140683961	140684060	2738398	0	-	0.575758	(0.57,1]	chr5	257970	4	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	HARS1	ENSG00000170445.16	ENST00000431330.7:ENST00000675366.1:ENST00000674523.1:ENST00000676327.1:ENST00000675094.1:ENST00000506579.6:ENST00000675851.1:ENST00000675698.1:ENST00000675763.1:ENST00000457527.6:ENST00000675827.1:ENST00000504156.7:ENST00000307633.7:ENST00000504366.5:ENST00000509087.2:ENST00000438307.6:ENST00000512396.6:ENST00000645491.1:ENST00000675204.1:ENST00000643686.1:ENST00000646229.1:ENST00000507746.7:ENST00000415192.6:ENST00000518126.6:ENST00000502888.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	34	2	4.7773	4.989725	5.20215	5.07088e-4	8.28896e-5	0.0202328	0.00812487
chrX	16168180	16168280	7768247	0	-	0.62	(0.57,1]	chrX	793931	1	SS5_PROX	SS5_PROX:INTRON	ENSG00000238178	ENSG00000238178.7	ENST00000435789.1	lncRNA	lncRNA	lncRNA	lncRNA	2	110	2	4.90182	4.989605	5.07739	3.19465e-8	8.64114e-9	7.06652e-5	2.50472e-5
chr11	32585754	32585851	4764487	0	+	0.340206	(0.32,0.35]	chr11	440546	11	INTRON	INTRON	EIF3M	ENSG00000149100.13	ENST00000531921.5:ENST00000531120.6:ENST00000525782.5:ENST00000531186.5:ENST00000524896.5:ENST00000532444.5:ENST00000323213.9:ENST00000524711.5:ENST00000530026.5:ENST00000532054.1:ENST00000533439.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	46	2	4.79482	4.989485	5.18415	0.00447781	0.00333629	0.0610799	0.0512081
chr8	73744425	73744523	3970904	0	-	0.346939	(0.32,0.35]	chr8	364191	17	INTRON	INTRON	STAU2:ENSG00000258677	ENSG00000040341.18:ENSG00000258677.2	ENST00000524300.6:ENST00000523558.5:ENST00000521210.5:ENST00000355780.9:ENST00000521727.5:ENST00000521451.5:ENST00000522509.5:ENST00000517542.5:ENST00000518981.5:ENST00000518767.5:ENST00000518502.5:ENST00000521293.5:ENST00000521447.5:ENST00000524104.5:ENST00000522962.5:ENST00000521419.5:ENST00000524191.5:ENST00000524113.5:ENST00000520945.5:ENST00000521736.5:ENST00000521845.5:ENST00000520872.5:ENST00000358757.5:ENST00000519818.5:ENST00000522061.5:ENST00000523160.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	46	2	4.79482	4.989485	5.18415	0.00447781	0.00333629	0.0610799	0.0512081
chr3	17728845	17728945	1630296	0	-	0.19	[0,0.28]	chr3	168275	266	INTRON	INTRON	TBC1D5	ENSG00000131374.15	ENST00000253692.11:ENST00000696125.1:ENST00000414318.2:ENST00000429383.8:ENST00000415814.6:ENST00000452492.6:ENST00000412981.5:ENST00000428355.5:ENST00000425944.5:ENST00000430169.5:ENST00000445294.5:ENST00000414349.5:ENST00000443499.6:ENST00000444756.5:ENST00000497531.5:ENST00000443386.5:ENST00000446863.5:ENST00000444471.5:ENST00000481396.5:ENST00000423331.6:ENST00000485432.1:ENST00000471679.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	48	2	4.97619	4.9894099999999995	5.00263	0.013055	0.00535756	0.093385	0.0663076
chr7	7206235	7206335	3274827	0	+	0.23	[0,0.28]	chr7	304569	231	INTRON	INTRON	C1GALT1	ENSG00000106392.11	ENST00000429911.5:ENST00000436587.7:ENST00000467716.1:ENST00000476068.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	48	2	4.97619	4.9894099999999995	5.00263	0.013055	0.00535756	0.093385	0.0663076
chr9	37207434	37207534	4118531	0	+	0.26	[0,0.28]	chr9	375389	205	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000461038.5:ENST00000488607.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	121	2	3.60019	4.988945	6.3777	0.00172089	1.8994e-5	0.0374701	0.00333235
chr8	41705942	41706042	3938130	0	-	0.42	(0.408,0.44]	chr8	361032	4	SS5_PROX	SS5_PROX:INTRON	ANK1	ENSG00000029534.21	ENST00000347528.8:ENST00000265709.13:ENST00000289734.13:ENST00000520299.5	protein_coding	protein_coding	protein_coding	protein_coding	0	44	2	4.67894	4.988365	5.29779	0.0087648	3.80479e-4	0.0788605	0.0176313
chr7	66116066	66116166	3323971	0	+	0.41	(0.408,0.44]	chr7	309095	7	INTRON	INTRON	CRCP	ENSG00000241258.7	ENST00000360415.7:ENST00000431089.6:ENST00000398684.6:ENST00000395326.8:ENST00000338592.5:ENST00000486848.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	44	2	4.78348	4.98775	5.19202	0.00290352	0.0016671	0.0494641	0.0369207
chrX	155884119	155884218	7740822	0	+	0.414141	(0.408,0.44]	chrX	792614	23	INTRON	INTRON	VAMP7	ENSG00000124333.16	ENST00000286448.12:ENST00000479687.6:ENST00000488344.6:ENST00000463317.6:ENST00000262640.11:ENST00000460621.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	44	2	4.78348	4.98775	5.19202	0.00290352	0.0016671	0.0494641	0.0369207
chr13	45340271	45340359	5585185	0	-	0.340909	(0.32,0.35]	chr13	533749	2	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TPT1	ENSG00000133112.17	ENST00000616577.4:ENST00000530705.6:ENST00000379056.5:ENST00000529421.5:ENST00000490277.1:ENST00000379060.8:ENST00000379055.5:ENST00000309246.9:ENST00000527226.2:ENST00000442760.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	111	2	4.20679	4.987695	5.7686	8.9843e-5	7.30399e-5	0.0079464	0.00767614
chr7	99501887	99501984	3362356	0	+	0.402062	(0.378,0.408]	chr7	314071	10	INTRON	INTRON	ZNF789	ENSG00000198556.14	ENST00000493485.5	protein_coding	protein_coding	protein_coding	protein_coding	0	45	2	4.58427	4.9868749999999995	5.38948	0.0128325	2.85992e-4	0.0926667	0.0150568
chr1	10275911	10276003	21320	0	+	0.532609	(0.515,0.57]	chr1	2108	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	KIF1B	ENSG00000054523.20	ENST00000676179.1:ENST00000377093.9:ENST00000696500.1:ENST00000263934.10:ENST00000696502.1:ENST00000696503.1:ENST00000696504.1:ENST00000377086.5:ENST00000377083.5:ENST00000377081.5:ENST00000620295.2:ENST00000622724.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	41	2	4.90912	4.986855	5.06459	0.0021669	6.03964e-4	0.0417866	0.0223465
chr16	81540182	81540282	6405953	0	+	0.52	(0.515,0.57]	chr16	615031	443	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	4.90912	4.986855	5.06459	0.0021669	6.03964e-4	0.0417866	0.0223465
chr15	75427498	75427598	6223828	0	-	0.52	(0.515,0.57]	chr15	594504	43	INTRON	INTRON	SIN3A	ENSG00000169375.16	ENST00000394947.8:ENST00000360439.8:ENST00000394949.8:ENST00000564778.5:ENST00000562776.5:ENST00000568431.5:ENST00000567289.5:ENST00000570115.5:ENST00000568309.5:ENST00000568190.1	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	4.97722	4.986784999999999	4.99635	0.00168681	8.06602e-4	0.0370386	0.0258804
chr20	47535503	47535603	7281333	0	+	0.54	(0.515,0.57]	chr20	740469	331	INTRON	INTRON	NCOA3	ENSG00000124151.19	ENST00000371998.8:ENST00000372004.7:ENST00000371997.3	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	4.97722	4.986784999999999	4.99635	0.00168681	8.06602e-4	0.0370386	0.0258804
chr3	138948843	138948927	1515369	0	+	0.535714	(0.515,0.57]	chr3	158472	5	INTRON	INTRON	FOXL2NB	ENSG00000206262.9	ENST00000383165.4:ENST00000470680.5:ENST00000498709.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	41	2	4.97722	4.986784999999999	4.99635	0.00168681	8.06602e-4	0.0370386	0.0258804
chr5	69251331	69251428	2380617	0	+	0.536082	(0.515,0.57]	chr5	229278	1	INTRON	INTRON	CDK7	ENSG00000134058.12	ENST00000629350.2:ENST00000506563.5:ENST00000512687.5:ENST00000515391.5:ENST00000256443.8:ENST00000515180.5:ENST00000506789.5:ENST00000510106.5:ENST00000514676.5:ENST00000504147.5:ENST00000508726.5:ENST00000502604.5:ENST00000513629.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	41	2	4.97722	4.986784999999999	4.99635	0.00168681	8.06602e-4	0.0370386	0.0258804
chr9	36593828	36593928	4116683	0	+	0.56	(0.515,0.57]	chr9	375257	38	INTRON	INTRON	MELK	ENSG00000165304.8	ENST00000543751.5:ENST00000536860.5:ENST00000541717.4:ENST00000536329.5:ENST00000627766.2:ENST00000298048.7:ENST00000536987.5:ENST00000545008.5:ENST00000495529.5:ENST00000489766.5:ENST00000625974.2:ENST00000487398.3:ENST00000626154.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	41	2	4.97722	4.986784999999999	4.99635	0.00168681	8.06602e-4	0.0370386	0.0258804
chr1	28622365	28622465	409799	0	-	0.28	[0,0.28]	chr1	49348	2	SS3_PROX	SS3_PROX:INTRON	TAF12	ENSG00000120656.14	ENST00000685589.1:ENST00000693642.1:ENST00000688108.1:ENST00000692098.1:ENST00000691563.1:ENST00000471683.6:ENST00000495422.2:ENST00000373824.9:ENST00000685312.1:ENST00000690860.1:ENST00000691050.1:ENST00000689843.1:ENST00000263974.4:ENST00000693729.1:ENST00000690492.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	48	2	4.82433	4.9860500000000005	5.14777	0.0200334	0.00311898	0.109608	0.0512673
chr7	40049899	40049998	3311628	0	+	0.262626	[0,0.28]	chr7	307518	8	INTRON	INTRON	CDK13	ENSG00000065883.17	ENST00000340829.10:ENST00000181839.10:ENST00000613626.4:ENST00000646039.1:ENST00000643859.1:ENST00000484589.2:ENST00000643915.1:ENST00000645470.1:ENST00000642592.1	protein_coding	protein_coding	protein_coding	protein_coding	0	48	2	4.82433	4.9860500000000005	5.14777	0.0200334	0.00311898	0.109608	0.0512673
chr20	836711	836809	7219465	0	+	0.387755	(0.378,0.408]	chr20	733614	2	INTRON	INTRON	FAM110A	ENSG00000125898.13	ENST00000381941.8:ENST00000304189.6:ENST00000381939.1:ENST00000246100.3	protein_coding	protein_coding	protein_coding	protein_coding	0	45	2	4.69169	4.98601	5.28033	0.00432302	0.00143651	0.0599409	0.0340925
chr22	35997951	35998051	7583693	0	-	0.39	(0.378,0.408]	chr22	775907	364	INTRON	INTRON	RBFOX2	ENSG00000100320.24	ENST00000438146.7:ENST00000695854.1	protein_coding	protein_coding	protein_coding	protein_coding	0	45	2	4.69169	4.98601	5.28033	0.00432302	0.00143651	0.0599409	0.0340925
chr4	145146093	145146179	2255137	0	-	0.197674	[0,0.28]	chr4	220188	1	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	OTUD4	ENSG00000164164.17	ENST00000455611.6:ENST00000454497.6:ENST00000447906.8:ENST00000509517.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	48	2	4.91414	4.98581	5.05748	0.0113653	0.0064519	0.0886611	0.0730725
chr16	16334872	16334969	6310681	0	+	0.556701	(0.515,0.57]	chr16	604034	6	INTRON	INTRON	ENSG00000183889	ENSG00000183889.12	ENST00000537112.5:ENST00000381497.6:ENST00000538085.5:ENST00000534258.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	108	2	3.74144	4.985785	6.23013	1.04004e-5	3.89558e-6	0.00235262	0.00142343
chr20	62024806	62024906	7360507	0	-	0.48	(0.476,0.515]	chr20	750714	97	INTRON	INTRON	TAF4	ENSG00000130699.20	ENST00000252996.9:ENST00000608887.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	89	2	4.02209	4.98573	5.94937	6.68973e-5	5.50774e-5	0.00677892	0.0065165
chr18	23473726	23473826	6883737	0	+	0.38	(0.378,0.408]	chr18	682201	1	SS5_PROX	SS5_PROX:INTRON	RIOK3	ENSG00000101782.15	ENST00000339486.8:ENST00000581585.5:ENST00000581302.5:ENST00000577501.5:ENST00000584130.1:ENST00000581339.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	97	2	4.54735	4.985465	5.42358	8.39231e-4	3.0154e-6	0.0266487	0.00111586
chr4	26373224	26373324	1937201	0	+	0.23	[0,0.28]	chr4	194383	52	INTRON	INTRON	RBPJ	ENSG00000168214.22	ENST00000512351.5:ENST00000681799.1:ENST00000681403.1:ENST00000342295.6:ENST00000512671.6:ENST00000506956.5:ENST00000345843.8:ENST00000361572.10:ENST00000514380.5:ENST00000514807.5:ENST00000348160.9:ENST00000681506.1:ENST00000509158.6:ENST00000691085.1:ENST00000692303.1:ENST00000681856.1:ENST00000513182.5:ENST00000681025.1:ENST00000681679.1:ENST00000680210.1:ENST00000355476.8:ENST00000680140.1:ENST00000511401.5:ENST00000680511.1:ENST00000510778.7:ENST00000679698.1:ENST00000679469.1:ENST00000681484.1:ENST00000505958.6:ENST00000507561.5:ENST00000514730.5:ENST00000507574.5:ENST00000514675.5:ENST00000515573.5:ENST00000689192.1:ENST00000680928.1:ENST00000681260.1:ENST00000681093.1:ENST00000504423.2:ENST00000511546.5:ENST00000342320.8:ENST00000504907.5:ENST00000511451.5:ENST00000681264.1:ENST00000504938.1:ENST00000680204.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	49	2	4.62084	4.984815	5.34879	0.0313633	0.00157139	0.13151	0.0365659
chr17	31141495	31141595	6591599	0	+	0.39	(0.378,0.408]	chr17	641057	126	INTRON	INTRON	NF1	ENSG00000196712.20	ENST00000696138.1:ENST00000356175.7:ENST00000487476.5:ENST00000691014.1:ENST00000358273.9:ENST00000431387.8:ENST00000579081.5:ENST00000489712.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	44	2	4.73839	4.984249999999999	5.23011	0.00837252	5.72873e-4	0.0774402	0.0217398
chr17	82844685	82844784	6695142	0	+	0.383838	(0.378,0.408]	chr17	654907	136	INTRON	INTRON	TBCD	ENSG00000141556.22	ENST00000682479.1:ENST00000682722.1:ENST00000684464.1:ENST00000684544.1:ENST00000681983.1:ENST00000684361.1:ENST00000683184.1:ENST00000683282.1:ENST00000684408.1:ENST00000355528.9:ENST00000683444.1:ENST00000684776.1:ENST00000683041.1:ENST00000684760.1:ENST00000684349.1:ENST00000682213.1:ENST00000683009.1:ENST00000682921.1:ENST00000539345.6:ENST00000684000.1:ENST00000684188.1:ENST00000684429.1:ENST00000682610.1:ENST00000683821.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	44	2	4.73839	4.984249999999999	5.23011	0.00837252	5.72873e-4	0.0774402	0.0217398
chr10	42805713	42805813	4428264	0	+	0.25	[0,0.28]	chr10	408133	31	INTRON	INTRON	BMS1	ENSG00000165733.8	ENST00000374518.6	protein_coding	protein_coding	protein_coding	protein_coding	0	49	2	4.71017	4.984159999999999	5.25815	0.0114708	0.0066548	0.0956037	0.0703807
chr4	56399498	56399597	2151283	0	-	0.272727	[0,0.28]	chr4	211753	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	PPAT	ENSG00000128059.8	ENST00000264220.6:ENST00000425339.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	49	2	4.71017	4.984159999999999	5.25815	0.0114708	0.0066548	0.0956037	0.0703807
chr5	60754329	60754427	2627544	0	-	0.255102	[0,0.28]	chr5	249613	27	UTR3	UTR3:EXON_MRNA	ELOVL7	ENSG00000164181.14	ENST00000508821.6:ENST00000425382.5:ENST00000505959.5	protein_coding	protein_coding	protein_coding	protein_coding	0	49	2	4.71017	4.984159999999999	5.25815	0.0114708	0.0066548	0.0956037	0.0703807
chr6	147778039	147778139	2991779	0	+	0.34	(0.32,0.35]	chr6	280177	406	INTRON	INTRON	ENSG00000227681	ENSG00000227681.5	ENST00000427015.1	lncRNA	lncRNA	lncRNA	lncRNA	1	101	2	3.53854	4.98339	6.42824	9.09596e-4	2.1132e-5	0.0277043	0.00376117
chr19	43842169	43842269	7075696	0	+	0.3	(0.28,0.32]	chr19	707322	8	INTRON	INTRON	ZNF283	ENSG00000167637.18	ENST00000618787.5:ENST00000588797.6:ENST00000650832.1:ENST00000324461.9	protein_coding	protein_coding	protein_coding	protein_coding	0	47	2	4.66359	4.98306	5.30253	0.0193496	0.0010319	0.108861	0.0294094
chr6	127305995	127306095	3211478	0	-	0.31	(0.28,0.32]	chr6	298724	114	INTRON	INTRON	ECHDC1	ENSG00000093144.19	ENST00000454859.8:ENST00000531967.5:ENST00000474289.6:ENST00000368295.8:ENST00000454591.6:ENST00000528402.5:ENST00000479525.6:ENST00000368291.6:ENST00000475319.1:ENST00000430841.6:ENST00000368289.6:ENST00000417628.6:ENST00000368292.10:ENST00000436638.5:ENST00000460558.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	47	2	4.66359	4.98306	5.30253	0.0193496	0.0010319	0.108861	0.0294094
chr11	33159599	33159699	4940961	0	-	0.5	(0.476,0.515]	chr11	462884	24	INTRON	INTRON	CSTF3	ENSG00000176102.13	ENST00000323959.9:ENST00000524827.6:ENST00000526480.1:ENST00000438862.6:ENST00000431742.2:ENST00000524556.1:ENST00000524775.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	43	2	4.90761	4.98304	5.05847	0.00386428	0.00108081	0.0542786	0.0300133
chr11	87152543	87152643	4843960	0	+	0.5	(0.476,0.515]	chr11	451856	608	INTRON	INTRON	TMEM135	ENSG00000166575.17	ENST00000340353.11:ENST00000529023.5:ENST00000526733.5:ENST00000305494.6:ENST00000532959.5:ENST00000525018.5:ENST00000531800.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	43	2	4.90761	4.98304	5.05847	0.00386428	0.00108081	0.0542786	0.0300133
chr4	145097968	145098050	2254766	0	-	0.487805	(0.476,0.515]	chr4	220137	2	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ANAPC10	ENSG00000164162.14	ENST00000641499.1:ENST00000506851.5:ENST00000613466.4:ENST00000507656.6:ENST00000502651.5:ENST00000309439.9:ENST00000451299.6:ENST00000510270.5:ENST00000511466.5:ENST00000514390.5:ENST00000513054.5:ENST00000502562.5:ENST00000508087.5:ENST00000514704.5:ENST00000507134.5:ENST00000502847.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	43	2	4.90761	4.98304	5.05847	0.00386428	0.00108081	0.0542786	0.0300133
chr9	124661907	124662007	4348121	0	-	0.42	(0.408,0.44]	chr9	399255	662	INTRON	INTRON	NR6A1	ENSG00000148200.17	ENST00000487099.7:ENST00000373584.7:ENST00000416460.6:ENST00000344523.8	protein_coding	protein_coding	protein_coding	protein_coding	0	45	2	4.62009	4.982785	5.34548	0.00504155	9.40657e-4	0.0646039	0.0280776
chr17	19062290	19062384	6570502	0	+	0.574468	(0.57,1]	chr17	638906	5	EXON_SMALL	EXON_SMALL	SNORD3B-1	ENSG00000265185.6	ENST00000577988.2	snoRNA	snoRNA	snoRNA	snoRNA	12	421	2	4.61479	4.981920000000001	5.34905	4.40864e-10	1e-12	4.19015e-6	4.97648e-8
chr19	10922729	10922820	7136652	0	-	0.406593	(0.378,0.408]	chr19	719735	7	UTR3	UTR3:EXON_MRNA	YIPF2	ENSG00000130733.11	ENST00000253031.6:ENST00000586748.6:ENST00000592646.5	protein_coding	protein_coding	protein_coding	protein_coding	1	91	2	4.17973	4.981730000000001	5.78373	1.89312e-4	2.85856e-5	0.012565	0.00423319
chr20	44499704	44499802	7344826	0	-	0.387755	(0.378,0.408]	chr20	748624	24	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	SERINC3	ENSG00000132824.14	ENST00000411544.5:ENST00000255175.5:ENST00000342374.5	protein_coding	protein_coding	protein_coding	protein_coding	1	91	2	4.17973	4.981730000000001	5.78373	1.89312e-4	2.85856e-5	0.012565	0.00423319
chr10	74425673	74425773	4458520	0	+	0.41	(0.408,0.44]	chr10	411580	267	INTRON	INTRON	ADK	ENSG00000156110.15	ENST00000672429.1:ENST00000539909.6:ENST00000286621.7:ENST00000673352.1:ENST00000673310.1:ENST00000672920.1:ENST00000672394.1:ENST00000372734.5:ENST00000673027.1:ENST00000541550.6:ENST00000672604.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	47	2	4.4358	4.98169	5.52758	0.00893097	4.54953e-4	0.0849778	0.0196892
chr19	4846491	4846590	7121661	0	-	0.474747	(0.44,0.476]	chr19	716662	13	INTRON	INTRON	PLIN3	ENSG00000105355.9	ENST00000221957.9:ENST00000592528.5:ENST00000589163.5:ENST00000585479.5	protein_coding	protein_coding	protein_coding	protein_coding	0	43	2	4.9	4.98144	5.06288	0.00423315	0.00102416	0.0572185	0.0294041
chr3	88156354	88156444	1457963	0	+	0.444444	(0.44,0.476]	chr3	153229	3	CDS	CDS:UTR3:EXON_MRNA	C3orf38	ENSG00000179021.10	ENST00000318887.8:ENST00000486971.1	protein_coding	protein_coding	protein_coding	protein_coding	0	43	2	4.9	4.98144	5.06288	0.00423315	0.00102416	0.0572185	0.0294041
chr8	140703207	140703303	4077043	0	-	0.447917	(0.44,0.476]	chr8	370361	1	INTRON	INTRON	PTK2	ENSG00000169398.20	ENST00000696786.1:ENST00000522684.5:ENST00000395218.3:ENST00000519654.5:ENST00000521059.5:ENST00000517887.5:ENST00000519465.5:ENST00000519993.5:ENST00000340930.7:ENST00000523539.5:ENST00000519419.5:ENST00000524202.5:ENST00000430260.6:ENST00000521986.5:ENST00000518173.5:ENST00000522424.5:ENST00000521562.5:ENST00000521250.5:ENST00000523388.5:ENST00000521981.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	43	2	4.96491	4.981365	4.99782	0.0034249	0.0013223	0.0517761	0.0333932
chr17	81258237	81258337	6847727	0	-	0.66	(0.57,1]	chr17	677886	46	INTRON	INTRON	SLC38A10	ENSG00000157637.13	ENST00000374759.8:ENST00000542075.5:ENST00000288439.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	35	2	4.56365	4.981154999999999	5.39866	0.00129848	2.7267e-5	0.0333764	0.00430583
chr2	62302436	62302536	790351	0	+	0.52	(0.515,0.57]	chr2	88708	46	INTRON	INTRON	ENSG00000228541	ENSG00000228541.2	ENST00000688476.1:ENST00000689590.1:ENST00000687402.1:ENST00000687773.1	lncRNA	lncRNA	lncRNA	lncRNA	0	42	2	4.68568	4.981095	5.27651	0.00270027	5.11033e-4	0.0479115	0.020816
chr6	75653580	75653680	2905473	0	+	0.26	[0,0.28]	chr6	274530	54	INTRON	INTRON	SENP6	ENSG00000112701.18	ENST00000370010.6:ENST00000447266.7:ENST00000327284.12:ENST00000483859.6:ENST00000424947.6:ENST00000436928.7:ENST00000485497.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	48	2	4.75964	4.980175	5.20071	0.0232081	0.00261806	0.118148	0.0470772
chr22	50235519	50235619	7603708	0	-	0.51	(0.476,0.515]	chr22	778832	16	INTRON	INTRON	TUBGCP6	ENSG00000128159.12	ENST00000498611.5:ENST00000439308.6:ENST00000248846.10:ENST00000434349.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	43	2	4.83962	4.98017	5.12072	0.00480934	8.42139e-4	0.0602209	0.0263691
chr7	152038413	152038513	3449638	0	+	0.48	(0.476,0.515]	chr7	322435	103	INTRON	INTRON	GALNT11	ENSG00000178234.13	ENST00000430044.7:ENST00000482812.1:ENST00000431668.1:ENST00000446096.5:ENST00000447778.5:ENST00000423337.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	43	2	4.83962	4.98017	5.12072	0.00480934	8.42139e-4	0.0602209	0.0263691
chr1	206207631	206207730	297900	0	+	0.363636	(0.35,0.378]	chr1	34341	17	EXON_MRNA	EXON_MRNA:INTRON	SRGAP2	ENSG00000266028.8	ENST00000573034.8:ENST00000624686.1:ENST00000419187.6:ENST00000605610.5:ENST00000624873.3	protein_coding	protein_coding	protein_coding	protein_coding:TEC	0	45	2	4.64457	4.980065	5.31556	0.012652	4.97087e-4	0.0926667	0.0201536
chr17	59001197	59001297	6800852	0	-	0.24	[0,0.28]	chr17	671678	2	SS5_PROX	SS5_PROX:INTRON	TRIM37	ENSG00000108395.14	ENST00000585287.5:ENST00000393066.7:ENST00000583945.5:ENST00000577554.5:ENST00000262294.12:ENST00000393065.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	48	2	4.84931	4.97982	5.11033	0.00991388	0.00779241	0.0838372	0.0787356
chr11	119085157	119085221	4874413	0	+	0.265625	[0,0.28]	chr11	455520	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	HMBS	ENSG00000256269.11	ENST00000536185.5:ENST00000652429.1:ENST00000545621.5:ENST00000545901.5:ENST00000442944.7:ENST00000542729.5:ENST00000537841.5:ENST00000543821.5:ENST00000640813.1:ENST00000546302.6:ENST00000542822.5:ENST00000542044.5:ENST00000536813.6:ENST00000544387.5:ENST00000535793.5:ENST00000543090.5:ENST00000649868.1:ENST00000534956.2:ENST00000648026.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	113	2	3.48025	4.97966	6.47907	0.00162172	9.55204e-5	0.0369782	0.00873495
chr5	72164872	72164972	2386157	0	+	0.34	(0.32,0.35]	chr5	230228	481	INTRON	INTRON	MAP1B	ENSG00000131711.15	ENST00000512974.5:ENST00000296755.12:ENST00000513526.6:ENST00000511641.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	45	2	4.89768	4.979535	5.06139	0.00793135	0.00179023	0.076155	0.0392749
chr5	109399837	109399937	2702271	0	-	0.33	(0.32,0.35]	chr5	254366	87	INTRON	INTRON	PJA2	ENSG00000198961.10	ENST00000361189.7:ENST00000511624.1:ENST00000512822.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	45	2	4.95971	4.979465	4.99922	0.00663522	0.00223907	0.0703181	0.0435144
chr9	72160467	72160567	4141376	0	+	0.34	(0.32,0.35]	chr9	377412	104	INTRON	INTRON	GDA	ENSG00000119125.17	ENST00000545168.5:ENST00000238018.8:ENST00000358399.8:ENST00000376986.5:ENST00000475764.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	45	2	4.95971	4.979465	4.99922	0.00663522	0.00223907	0.0703181	0.0435144
chr6	34636101	34636201	3085611	0	-	0.46	(0.44,0.476]	chr6	288679	288	INTRON	INTRON	ILRUN	ENSG00000196821.10	ENST00000374026.7:ENST00000374023.8:ENST00000374021.1	protein_coding	protein_coding	protein_coding	protein_coding	0	43	2	4.83202	4.978575	5.12513	0.00525002	7.96486e-4	0.0633615	0.0258804
chr7	96146996	96147096	3574488	0	-	0.45	(0.44,0.476]	chr7	332993	3	SS3_PROX	SS3_PROX:INTRON	SLC25A13	ENSG00000004864.14	ENST00000265631.10:ENST00000416240.6:ENST00000490072.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	44	2	4.60647	4.978395	5.35032	0.0102339	3.02713e-4	0.0850389	0.0155054
chr20	53590958	53591057	7358456	0	-	0.454545	(0.44,0.476]	chr20	750309	74	INTRON	INTRON	ZNF217	ENSG00000171940.14	ENST00000371471.7:ENST00000431687.5:ENST00000540425.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	43	2	4.92968	4.9783550000000005	5.02703	0.00278015	0.00171443	0.0469265	0.0381936
chr1	169828677	169828762	252424	0	+	0.435294	(0.408,0.44]	chr1	29920	5	INTRON	INTRON	C1orf112	ENSG00000000460.17	ENST00000498289.5:ENST00000359326.9:ENST00000459772.5:ENST00000286031.10:ENST00000413811.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	43	2	4.89327	4.978350000000001	5.06343	0.00458906	0.00101725	0.0595107	0.0293497
chr2	147953119	147953215	1242090	0	-	0.4375	(0.408,0.44]	chr2	131841	2	INTRON	INTRON	ORC4	ENSG00000115947.14	ENST00000392857.10:ENST00000264169.6:ENST00000536575.5:ENST00000535373.5:ENST00000540442.5:ENST00000478904.5:ENST00000461711.5:ENST00000496670.6:ENST00000490200.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	43	2	4.89327	4.978350000000001	5.06343	0.00458906	0.00101725	0.0595107	0.0293497
chr7	4693962	4694062	3270032	0	+	0.44	(0.408,0.44]	chr7	303884	107	INTRON	INTRON	FOXK1	ENSG00000164916.11	ENST00000328914.5	protein_coding	protein_coding	protein_coding	protein_coding	0	43	2	4.95817	4.97827	4.99837	0.00372419	0.00131369	0.0535094	0.0333932
chr1	246846621	246846721	681069	0	-	0.3	(0.28,0.32]	chr1	79852	23	INTRON	INTRON	AHCTF1	ENSG00000153207.16	ENST00000648844.2:ENST00000326225.3:ENST00000366508.5:ENST00000470300.5:ENST00000498601.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	46	2	4.92929	4.977975	5.02666	0.0098607	0.0027935	0.0838128	0.0488769
chr15	63821527	63821627	6200781	0	-	0.46	(0.44,0.476]	chr15	591445	406	INTRON	INTRON	HERC1	ENSG00000103657.14	ENST00000443617.7:ENST00000561400.1:ENST00000559886.1:ENST00000558532.1:ENST00000560462.1:ENST00000560316.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	44	2	4.70355	4.97767	5.25179	0.00383786	0.00124521	0.0562562	0.0322969
chr12	122491053	122491153	5441892	0	-	0.4	(0.378,0.408]	chr12	520507	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	ZCCHC8	ENSG00000033030.15	ENST00000672018.1:ENST00000633063.3:ENST00000543897.5:ENST00000536306.5:ENST00000536663.5:ENST00000540586.1	protein_coding	protein_coding	protein_coding	protein_coding	1	91	2	4.20738	4.977625	5.74787	2.21531e-4	2.43547e-5	0.0136064	0.00386122
chr5	146115010	146115110	2746695	0	-	0.41	(0.408,0.44]	chr5	258737	3	INTRON	INTRON	LARS1	ENSG00000133706.19	ENST00000674174.1:ENST00000674170.1:ENST00000674479.1:ENST00000674309.1:ENST00000674218.1:ENST00000674467.1:ENST00000674290.1:ENST00000674447.1:ENST00000674270.1:ENST00000674383.1:ENST00000674191.1:ENST00000674158.1:ENST00000506231.6:ENST00000674471.1:ENST00000674181.1:ENST00000394434.7:ENST00000674398.1:ENST00000674277.1:ENST00000274562.13:ENST00000510191.5:ENST00000504323.6:ENST00000674310.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	95	2	3.81928	4.977365	6.13545	3.06208e-4	4.91945e-6	0.0161362	0.00150985
chr3	14478901	14478984	1370179	0	+	0.325301	(0.32,0.35]	chr3	144390	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SLC6A6	ENSG00000131389.18	ENST00000613060.4:ENST00000618278.4:ENST00000649500.1:ENST00000622186.5:ENST00000452151.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	45	2	4.83287	4.976929999999999	5.12099	0.0095071	0.00143632	0.0817766	0.0347139
chr7	128330121	128330219	3635117	0	-	0.346939	(0.32,0.35]	chr7	337871	39	INTRON	INTRON	RBM28	ENSG00000106344.8	ENST00000223073.6:ENST00000415472.6:ENST00000487602.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	45	2	4.83287	4.976929999999999	5.12099	0.0095071	0.00143632	0.0817766	0.0347139
chr19	4100263	4100357	7119297	0	-	0.553191	(0.515,0.57]	chr19	716149	10	EXON_MRNA	EXON_MRNA:INTRON	MAP2K2	ENSG00000126934.15	ENST00000262948.10:ENST00000689792.1:ENST00000601786.5:ENST00000600584.5:ENST00000394867.9:ENST00000597263.5:ENST00000688002.1:ENST00000599021.1:ENST00000687128.1:ENST00000593364.5:ENST00000602167.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	41	2	4.84936	4.97692	5.10448	0.00146032	0.0010345	0.0349875	0.029231300000000002
chr9	93511870	93511970	4158650	0	+	0.53	(0.515,0.57]	chr9	379151	126	INTRON	INTRON	FAM120A	ENSG00000048828.17	ENST00000277165.11:ENST00000375389.7:ENST00000446420.2	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	4.84936	4.97692	5.10448	0.00146032	0.0010345	0.0349875	0.029231300000000002
chr10	89747954	89748053	4485044	0	+	0.292929	(0.28,0.32]	chr10	412815	16	INTRON	INTRON	KIF20B	ENSG00000138182.15	ENST00000371728.8:ENST00000260753.8:ENST00000478929.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	46	2	4.86731	4.976765	5.08622	0.0116253	0.00227525	0.0889104	0.0437013
chr4	53233143	53233242	2144009	0	-	0.292929	(0.28,0.32]	chr4	211165	872	INTRON	INTRON	SCFD2	ENSG00000184178.17	ENST00000401642.8:ENST00000388940.8	protein_coding	protein_coding	protein_coding	protein_coding	0	46	2	4.86731	4.976765	5.08622	0.0116253	0.00227525	0.0889104	0.0437013
chr7	4984341	4984409	3271142	0	+	0.338235	(0.32,0.35]	chr7	304023	2	INTRON	INTRON	RNF216P1	ENSG00000196204.12	ENST00000406089.6:ENST00000493407.5:ENST00000477090.5:ENST00000404006.5:ENST00000403969.5:ENST00000494947.5:ENST00000429902.5:ENST00000406608.2:ENST00000405396.2	lncRNA	lncRNA	lncRNA	lncRNA	0	45	2	4.93425	4.97671	5.01917	0.0055659	0.00281048	0.0648867	0.0488779
chr15	28632036	28632136	5988341	0	+	0.31	(0.28,0.32]	chr15	569276	22	INTRON	INTRON	HERC2P9	ENSG00000206149.11	ENST00000689985.1:ENST00000688694.1:ENST00000529537.2:ENST00000529624.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	46	2	4.96454	4.97663	4.98872	0.00838468	0.00344078	0.0774402	0.0539802
chr3	149083921	149084008	1840975	0	-	0.298851	(0.28,0.32]	chr3	185200	2	SS3_PROX	SS3_PROX:INTRON	HLTF	ENSG00000071794.16	ENST00000310053.10:ENST00000465259.5:ENST00000392912.6:ENST00000494055.5:ENST00000481663.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	46	2	4.96454	4.97663	4.98872	0.00838468	0.00344078	0.0774402	0.0539802
chr5	44811254	44811334	2352018	0	+	0.3125	(0.28,0.32]	chr5	226931	1	SS5_PROX	SS5_PROX:INTRON	MRPS30	ENSG00000112996.11	ENST00000507110.6:ENST00000515647.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	46	2	4.96454	4.97663	4.98872	0.00838468	0.00344078	0.0774402	0.0539802
chr8	129570221	129570321	4060989	0	-	0.55	(0.515,0.57]	chr8	369672	131	INTRON	INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1:ENST00000676273.1:ENST00000667643.1:ENST00000668791.1:ENST00000663716.1:ENST00000663572.1:ENST00000676148.1:ENST00000667962.1:ENST00000674877.1:ENST00000675316.1:ENST00000674656.1:ENST00000446592.7:ENST00000667341.1:ENST00000675186.1:ENST00000652971.1:ENST00000661447.1:ENST00000674863.1:ENST00000675498.1:ENST00000675527.1:ENST00000676108.1:ENST00000657647.1:ENST00000675589.1:ENST00000675913.1:ENST00000675109.1:ENST00000671632.1:ENST00000671311.1:ENST00000676099.1:ENST00000660652.1:ENST00000675522.1:ENST00000675044.1:ENST00000675435.1:ENST00000674639.1:ENST00000676069.1:ENST00000675532.1:ENST00000674762.1:ENST00000523151.6:ENST00000675948.1:ENST00000665364.1:ENST00000657251.1:ENST00000675166.1:ENST00000674883.1:ENST00000675867.1:ENST00000674580.1:ENST00000675393.1:ENST00000520048.1:ENST00000674906.1:ENST00000676030.1:ENST00000670588.1:ENST00000675072.1:ENST00000664936.1:ENST00000652914.1:ENST00000657069.1:ENST00000674882.1	lncRNA	lncRNA	lncRNA	lncRNA	1	86	2	4.12784	4.97598	5.82412	4.0232e-5	1.29371e-5	0.00539487	0.00266147
chr14	103055400	103055500	5972035	0	-	0.37	(0.35,0.378]	chr14	567588	429	INTRON	INTRON	CDC42BPB	ENSG00000198752.11	ENST00000361246.7	protein_coding	protein_coding	protein_coding	protein_coding	0	44	2	4.92355	4.975935	5.02832	0.00573514	0.00156444	0.0657377	0.0365263
chr2	241727896	241727995	1056282	0	+	0.434343	(0.408,0.44]	chr2	112621	30	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	ING5	ENSG00000168395.16	ENST00000313552.11:ENST00000486061.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	43	2	4.8253	4.975490000000001	5.12568	0.0056738	7.90919e-4	0.0653997	0.0258324
chr20	37229670	37229769	7266649	0	+	0.424242	(0.408,0.44]	chr20	738458	3	SS3_PROX	SS3_PROX:INTRON	RPN2	ENSG00000118705.17	ENST00000373622.9:ENST00000237530.11:ENST00000437329.5:ENST00000456400.1	protein_coding	protein_coding	protein_coding	protein_coding	0	43	2	4.8253	4.975490000000001	5.12568	0.0056738	7.90919e-4	0.0653997	0.0258324
chr7	152299469	152299569	3679917	0	-	0.43	(0.408,0.44]	chr7	341623	127	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000684262.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	43	2	4.8253	4.975490000000001	5.12568	0.0056738	7.90919e-4	0.0653997	0.0258324
chr1	213101060	213101159	311202	0	+	0.424242	(0.408,0.44]	chr1	35919	229	INTRON	INTRON	RPS6KC1	ENSG00000136643.12	ENST00000615329.4:ENST00000543354.5:ENST00000614059.4:ENST00000543470.5:ENST00000366960.8:ENST00000366959.4:ENST00000490299.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	44	2	4.59979	4.97533	5.35087	0.0109537	3.00323e-4	0.0873034	0.0155054
chr17	42481154	42481249	6611522	0	+	0.431579	(0.408,0.44]	chr17	644111	3	SS5_PROX	SS5_PROX:INTRON	ATP6V0A1	ENSG00000033627.17	ENST00000393829.6:ENST00000343619.9:ENST00000537728.5:ENST00000264649.10:ENST00000585525.5:ENST00000544137.5:ENST00000589727.5:ENST00000587882.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	44	2	4.59979	4.97533	5.35087	0.0109537	3.00323e-4	0.0873034	0.0155054
chr10	67817829	67817928	4636169	0	-	0.424242	(0.408,0.44]	chr10	426269	13	INTRON	INTRON	DNAJC12	ENSG00000108176.15	ENST00000225171.7:ENST00000483798.6:ENST00000480963.5:ENST00000339758.7:ENST00000480180.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	43	2	4.93024	4.9752600000000005	5.02028	0.00303216	0.00170369	0.0493883	0.0381936
chr14	35792723	35792823	5872213	0	-	0.43	(0.408,0.44]	chr14	557848	166	INTRON	INTRON	RALGAPA1	ENSG00000174373.17	ENST00000307138.10:ENST00000389698.7:ENST00000680220.1:ENST00000554259.6:ENST00000637992.1:ENST00000382366.7:ENST00000553892.2	protein_coding	protein_coding	protein_coding	protein_coding	0	43	2	4.93024	4.9752600000000005	5.02028	0.00303216	0.00170369	0.0493883	0.0381936
chr2	86118039	86118134	822497	0	+	0.431579	(0.408,0.44]	chr2	91765	5	INTRON	INTRON	PTCD3	ENSG00000132300.19	ENST00000465560.5:ENST00000409783.6:ENST00000254630.12:ENST00000483925.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	43	2	4.93024	4.9752600000000005	5.02028	0.00303216	0.00170369	0.0493883	0.0381936
chr7	139100538	139100638	3656329	0	-	0.28	[0,0.28]	chr7	339450	104	INTRON	INTRON	ZC3HAV1	ENSG00000105939.14	ENST00000242351.10:ENST00000464606.5:ENST00000680309.1:ENST00000471652.1	protein_coding	protein_coding	protein_coding	protein_coding	0	50	2	4.46726	4.975165	5.48307	0.0427997	9.62922e-4	0.148082	0.0285195
chr19	10755588	10755688	7014145	0	+	0.37	(0.35,0.378]	chr19	696923	1	SS5_PROX	SS5_PROX:INTRON	DNM2	ENSG00000079805.19	ENST00000683738.1:ENST00000682285.1:ENST00000682524.1:ENST00000355667.11:ENST00000389253.9:ENST00000585892.5:ENST00000359692.10:ENST00000408974.8:ENST00000586939.5:ENST00000588976.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	44	2	4.8587	4.97461	5.09052	0.00695662	0.00123501	0.0718189	0.0326215
chr6	31754719	31754818	2843642	0	+	0.353535	(0.35,0.378]	chr6	267818	7	INTRON	INTRON	MSH5:MSH5-SAPCD1	ENSG00000204410.16:ENSG00000255152.8	ENST00000375755.8:ENST00000375750.9:ENST00000650702.1:ENST00000493662.6:ENST00000375703.7:ENST00000375740.7:ENST00000423982.6:ENST00000463144.5:ENST00000450148.5:ENST00000468602.5:ENST00000468136.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	44	2	4.8587	4.97461	5.09052	0.00695662	0.00123501	0.0718189	0.0326215
chr7	135210338	135210437	3647445	0	-	0.363636	(0.35,0.378]	chr7	339103	4	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	WDR91	ENSG00000105875.15	ENST00000354475.5:ENST00000423565.5:ENST00000683848.1:ENST00000682802.1:ENST00000683947.1:ENST00000684339.1:ENST00000684322.1:ENST00000682759.1:ENST00000682339.1:ENST00000682250.1:ENST00000485942.2:ENST00000466182.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	44	2	4.8587	4.97461	5.09052	0.00695662	0.00123501	0.0718189	0.0326215
chr6	30721148	30721233	2841345	0	+	0.411765	(0.408,0.44]	chr6	267064	2	INTRON	INTRON	TUBB	ENSG00000196230.14	ENST00000681435.1:ENST00000327892.13	protein_coding	protein_coding	protein_coding	protein_coding	0	44	2	4.7041	4.9745550000000005	5.24501	0.00381677	0.00137378	0.0562562	0.0336718
chr1	180393717	180393817	594741	0	-	0.37	(0.35,0.378]	chr1	71180	668	INTRON	INTRON	ACBD6	ENSG00000230124.8	ENST00000645415.1:ENST00000642319.1:ENST00000496993.5:ENST00000475338.2:ENST00000367595.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	44	2	4.9633	4.974455000000001	4.98561	0.00474226	0.00198929	0.0600445	0.0411469
chr12	70311816	70311915	5167129	0	+	0.292929	(0.28,0.32]	chr12	489427	4	INTRON	INTRON	CNOT2	ENSG00000111596.14	ENST00000418359.7:ENST00000552319.5:ENST00000550160.5:ENST00000551661.5:ENST00000551132.5:ENST00000548021.5:ENST00000550641.6:ENST00000229195.8:ENST00000552915.5:ENST00000549443.5:ENST00000552483.5:ENST00000547321.5:ENST00000553020.5:ENST00000548159.5:ENST00000549750.5:ENST00000551043.5:ENST00000548599.5:ENST00000550194.5:ENST00000551873.5:ENST00000547867.5:ENST00000552151.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	53	2	4.14214	4.974115	5.80609	0.0579756	1.23223e-4	0.167723	0.00949625
chr11	65391599	65391697	4805538	0	+	0.489796	(0.476,0.515]	chr11	446508	17	INTRON	INTRON	FRMD8	ENSG00000126391.14	ENST00000528854.1:ENST00000317568.10:ENST00000355991.9:ENST00000533782.5:ENST00000416776.6:ENST00000526201.1:ENST00000525156.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	43	2	4.85379	4.97401	5.09423	0.00234214	0.00204588	0.0442989	0.04086
chr3	195978646	195978745	1896851	0	-	0.484848	(0.476,0.515]	chr3	189844	10	INTRON	INTRON	SDHAP1	ENSG00000185485.14	ENST00000427841.5:ENST00000440850.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	43	2	4.85379	4.97401	5.09423	0.00234214	0.00204588	0.0442989	0.04086
chr7	116980451	116980551	3386256	0	+	0.51	(0.476,0.515]	chr7	317132	120	INTRON	INTRON	ST7:ST7-OT4	ENSG00000004866.22:ENSG00000214188.9	ENST00000393446.6:ENST00000265437.9:ENST00000393451.7:ENST00000438863.5:ENST00000393449.5:ENST00000443979.5:ENST00000323984.8:ENST00000417919.5:ENST00000446490.5:ENST00000471110.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:nonsense_mediated_decay:lncRNA	0	43	2	4.85379	4.97401	5.09423	0.00234214	0.00204588	0.0442989	0.04086
chr4	145059330	145059429	2254368	0	-	0.383838	(0.378,0.408]	chr4	220103	52	INTRON	INTRON	ANAPC10	ENSG00000164162.14	ENST00000641499.1:ENST00000506851.5:ENST00000613466.4:ENST00000507656.6:ENST00000502651.5:ENST00000309439.9:ENST00000451299.6:ENST00000510270.5:ENST00000511466.5:ENST00000514390.5:ENST00000513054.5:ENST00000502562.5:ENST00000512680.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	44	2	4.77105	4.97366	5.17627	0.00330823	0.00208234	0.0527031	0.0411801
chr7	96247910	96248010	3575513	0	-	0.4	(0.378,0.408]	chr7	333065	126	INTRON	INTRON	SLC25A13	ENSG00000004864.14	ENST00000265631.10:ENST00000416240.6:ENST00000472162.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	44	2	4.77105	4.97366	5.17627	0.00330823	0.00208234	0.0527031	0.0411801
chr7	6036923	6037023	3476012	0	-	0.47	(0.44,0.476]	chr7	325181	1	SS5_PROX	SS5_PROX:INTRON	EIF2AK1	ENSG00000086232.13	ENST00000199389.11	protein_coding	protein_coding	protein_coding	protein_coding	1	91	2	4.37037	4.97346	5.57655	3.3967e-4	8.53106e-6	0.0170719	0.00210871
chr1	182861973	182862073	273219	0	+	0.31	(0.28,0.32]	chr1	31923	14	INTRON	INTRON	DHX9	ENSG00000135829.17	ENST00000367549.4	protein_coding	protein_coding	protein_coding	protein_coding	0	46	2	4.80255	4.97298	5.14341	0.0137406	0.00185891	0.0949306	0.039946
chr10	63361466	63361566	4634345	0	-	0.32	(0.28,0.32]	chr10	426226	924	INTRON	INTRON	JMJD1C	ENSG00000171988.20	ENST00000399262.7:ENST00000633035.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	46	2	4.80255	4.97298	5.14341	0.0137406	0.00185891	0.0949306	0.039946
chr10	89726921	89727021	4484825	0	+	0.45	(0.44,0.476]	chr10	412774	4	SS5_PROX	SS5_PROX:INTRON	KIF20B	ENSG00000138182.15	ENST00000371728.8:ENST00000260753.8:ENST00000478929.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	43	2	4.76068	4.972745	5.18481	0.00653414	6.21872e-4	0.0699952	0.0223951
chr20	50527680	50527780	7286087	0	+	0.36	(0.35,0.378]	chr20	741241	167	INTRON	INTRON	PTPN1	ENSG00000196396.10	ENST00000541713.5:ENST00000371621.5	protein_coding	protein_coding	protein_coding	protein_coding	0	47	2	4.49626	4.9727250000000005	5.44919	0.00917582	9.66659e-4	0.0855292	0.0282401
chr2	11826051	11826148	694769	0	+	0.298969	(0.28,0.32]	chr2	81445	14	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	LPIN1	ENSG00000134324.12	ENST00000425416.6:ENST00000396097.5:ENST00000256720.6:ENST00000674199.1:ENST00000404113.6:ENST00000475922.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	46	2	4.89962	4.9727049999999995	5.04579	0.00714672	0.00425206	0.0723634	0.0595557
chr20	17965514	17965612	7320539	0	-	0.602041	(0.57,1]	chr20	745337	27	INTRON	INTRON	SNX5	ENSG00000089006.17	ENST00000377768.7:ENST00000490175.5:ENST00000377759.9:ENST00000431277.5:ENST00000419004.2:ENST00000474883.5:ENST00000469704.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	34	2	4.67443	4.97255	5.27067	8.07515e-4	5.68536e-5	0.0258804	0.00655354
chr7	75484756	75484842	3558919	0	-	0.372093	(0.35,0.378]	chr7	331561	1	INTRON	INTRON	POM121C:ENSG00000242073	ENSG00000272391.6:ENSG00000242073.2	ENST00000615331.5:ENST00000415277.2	protein_coding	protein_coding	protein_coding:transcribed_unprocessed_pseudogene	protein_coding:transcribed_unprocessed_pseudogene	2	125	2	3.80776	4.972315	6.13687	5.13037e-5	1.13445e-5	0.0062158	0.00249255
chr2	32515086	32515184	732427	0	+	0.438776	(0.408,0.44]	chr2	84577	2	CDS	CDS:EXON_MRNA	BIRC6	ENSG00000115760.15	ENST00000421745.7:ENST00000648282.1	protein_coding	protein_coding	protein_coding	protein_coding	3	142	2	3.5443	4.9719	6.3995	6.97353e-6	6.80425e-6	0.00195911	0.00187943
chr17	46116970	46117070	6784104	0	-	0.26	[0,0.28]	chr17	669208	219	INTRON	INTRON	KANSL1	ENSG00000120071.15	ENST00000574590.6:ENST00000572904.6:ENST00000432791.7:ENST00000575318.6:ENST00000638275.1:ENST00000262419.10:ENST00000648792.1:ENST00000639531.1:ENST00000639150.1:ENST00000639853.1:ENST00000571698.2:ENST00000639375.1:ENST00000577114.2:ENST00000638269.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	48	2	4.69191	4.971845	5.25178	0.0269474	0.0022031	0.123442	0.0435144
chr4	174297165	174297265	2082712	0	+	0.25	[0,0.28]	chr4	205805	112	INTRON	INTRON	CEP44	ENSG00000164118.13	ENST00000505124.5:ENST00000457424.6:ENST00000396791.7:ENST00000503780.6:ENST00000514712.5:ENST00000515299.5:ENST00000503053.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	48	2	4.69191	4.971845	5.25178	0.0269474	0.0022031	0.123442	0.0435144
chr1	40380489	40380589	81511	0	+	0.4	(0.378,0.408]	chr1	10553	54	INTRON	INTRON	SMAP2	ENSG00000084070.12	ENST00000435168.6:ENST00000372718.8:ENST00000372708.5	protein_coding	protein_coding	protein_coding	protein_coding	2	120	2	3.44551	4.970675	6.49584	8.68398e-5	5.55891e-6	0.00783027	0.00176075
chr18	50392247	50392343	6900584	0	+	0.260417	[0,0.28]	chr18	683701	1	UTR3	UTR3:EXON_MRNA	SKA1	ENSG00000154839.10	ENST00000417656.6:ENST00000285116.8:ENST00000488454.5	protein_coding	protein_coding	protein_coding	protein_coding	0	49	2	4.5461	4.970525	5.39495	0.0365918	0.00133175	0.138959	0.0335129
chr15	44580423	44580523	6163898	0	-	0.36	(0.35,0.378]	chr15	587255	50	INTRON	INTRON	SPG11	ENSG00000104133.16	ENST00000684235.1:ENST00000261866.12:ENST00000559511.6:ENST00000682065.1:ENST00000682669.1:ENST00000683496.1:ENST00000682460.1:ENST00000682495.1:ENST00000684038.1:ENST00000683186.1:ENST00000683734.1:ENST00000683753.1:ENST00000535302.6:ENST00000427534.6:ENST00000561391.2:ENST00000558319.5:ENST00000684676.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	44	2	4.79079	4.970475	5.15016	0.00846427	9.78549e-4	0.0776969	0.0287765
chr12	98598703	98598803	5199039	0	+	0.19	[0,0.28]	chr12	491867	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	SLC25A3	ENSG00000075415.15	ENST00000401722.7:ENST00000188376.9:ENST00000551917.5:ENST00000546766.5:ENST00000228318.8:ENST00000552981.6:ENST00000551123.5:ENST00000549338.5:ENST00000548847.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	120	2	3.75988	4.97042	6.18096	9.5295e-4	4.96998e-5	0.0282335	0.00577648
chr8	67208187	67208287	3962428	0	-	0.32	(0.28,0.32]	chr8	363563	11	INTRON	INTRON	ARFGEF1	ENSG00000066777.9	ENST00000520381.5:ENST00000518789.5:ENST00000262215.8:ENST00000518230.5	protein_coding	protein_coding	protein_coding	protein_coding	0	47	2	4.58875	4.97032	5.35189	0.0230574	8.52844e-4	0.118056	0.0264928
chr1	234476581	234476680	661410	0	-	0.353535	(0.35,0.378]	chr1	78262	34	INTRON	INTRON	TARBP1	ENSG00000059588.10	ENST00000040877.2	protein_coding	protein_coding	protein_coding	protein_coding	0	44	2	4.89523	4.970174999999999	5.04512	0.00393262	0.00253947	0.0548259	0.0465056
chr10	14913597	14913696	4561478	0	-	0.30303	(0.28,0.32]	chr10	420946	24	INTRON	INTRON	DCLRE1C	ENSG00000152457.18	ENST00000378289.8:ENST00000378278.7:ENST00000378246.6:ENST00000357717.6:ENST00000378258.5:ENST00000378249.5:ENST00000396817.6:ENST00000378255.5:ENST00000378254.5:ENST00000378242.1:ENST00000492201.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	47	2	4.68527	4.969575	5.25388	0.00819419	0.00385849	0.0810802	0.0542786
chr11	74903741	74903841	4988748	0	-	0.31	(0.28,0.32]	chr11	471326	398	INTRON	INTRON	XRRA1	ENSG00000166435.16	ENST00000530562.5:ENST00000340360.10:ENST00000321448.12:ENST00000684022.1:ENST00000531849.5:ENST00000527087.5:ENST00000531449.5:ENST00000529926.1:ENST00000528819.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	47	2	4.68527	4.969575	5.25388	0.00819419	0.00385849	0.0810802	0.0542786
chr5	62588500	62588599	2364804	0	+	0.434343	(0.408,0.44]	chr5	228027	72	INTRON	INTRON	IPO11	ENSG00000086200.17	ENST00000325324.11:ENST00000409296.7:ENST00000511713.5:ENST00000511133.1:ENST00000409534.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	43	2	4.85872	4.969275	5.07983	0.00247652	0.00221911	0.0446195	0.0435144
chr15	43162382	43162481	6010746	0	+	0.585859	(0.57,1]	chr15	572308	12	INTRON	INTRON	TMEM62	ENSG00000137842.7	ENST00000260403.7:ENST00000564494.1:ENST00000566308.1:ENST00000563859.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	33	2	4.96336	4.96897	4.97458	2.67728e-4	2.05554e-4	0.0149989	0.0124557
chr2	10364878	10364978	692251	0	+	0.59	(0.57,1]	chr2	81139	101	INTRON	INTRON	HPCAL1	ENSG00000115756.13	ENST00000423674.5:ENST00000307845.8:ENST00000381765.7:ENST00000419810.6:ENST00000622018.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	33	2	4.96336	4.96897	4.97458	2.67728e-4	2.05554e-4	0.0149989	0.0124557
chr3	172084891	172084991	1559997	0	+	0.34	(0.32,0.35]	chr3	161527	376	INTRON	INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000421757.5:ENST00000469491.5:ENST00000336824.8:ENST00000423424.5:ENST00000416957.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	47	2	4.45629	4.96856	5.48083	0.0246089	3.35843e-4	0.12011	0.0162819
chr13	105718074	105718174	5533802	0	+	0.42	(0.408,0.44]	chr13	529032	2	SS3_PROX	SS3_PROX:INTRON	LINC00343	ENSG00000226620.8	ENST00000599179.2:ENST00000667582.1:ENST00000671026.1:ENST00000596398.6:ENST00000656290.1:ENST00000601607.6:ENST00000663594.1:ENST00000667429.1:ENST00000653178.1:ENST00000660821.1:ENST00000598478.2:ENST00000454555.2:ENST00000667492.1:ENST00000669807.1:ENST00000655625.1:ENST00000671060.1:ENST00000653504.1:ENST00000659258.1:ENST00000656920.1:ENST00000670771.1:ENST00000655201.1:ENST00000670433.1:ENST00000668581.1:ENST00000668362.1:ENST00000667217.1:ENST00000608426.2:ENST00000663744.1:ENST00000660976.1:ENST00000658308.1:ENST00000661872.1:ENST00000663287.1:ENST00000655741.1:ENST00000665747.1:ENST00000669706.1:ENST00000656267.1:ENST00000670308.1:ENST00000660236.1:ENST00000659016.1:ENST00000665309.1:ENST00000670977.1:ENST00000661301.1:ENST00000660560.1:ENST00000660294.1:ENST00000659909.1:ENST00000662500.1:ENST00000663045.1:ENST00000667987.1:ENST00000668272.1:ENST00000666696.1:ENST00000658024.1:ENST00000670430.1:ENST00000666948.1:ENST00000663761.1:ENST00000670555.1:ENST00000661817.1:ENST00000669887.1:ENST00000667685.1:ENST00000667106.1:ENST00000664201.1:ENST00000669675.1:ENST00000655062.1:ENST00000658095.1:ENST00000658711.1:ENST00000654132.1:ENST00000658692.1:ENST00000661079.1:ENST00000671053.1:ENST00000666322.1:ENST00000656646.1:ENST00000669035.1:ENST00000663194.1:ENST00000669655.1:ENST00000664695.1:ENST00000659496.1:ENST00000658169.1:ENST00000664522.1:ENST00000669540.1:ENST00000655448.1:ENST00000671561.1:ENST00000663969.1:ENST00000668396.1:ENST00000656539.1:ENST00000657599.1:ENST00000599264.2:ENST00000668939.1:ENST00000653600.1:ENST00000670303.1:ENST00000670821.1:ENST00000670530.1:ENST00000656615.1:ENST00000670114.1:ENST00000664140.1:ENST00000669886.1:ENST00000654919.1:ENST00000655173.1:ENST00000666040.1:ENST00000669959.1:ENST00000661976.1:ENST00000669507.1:ENST00000659165.1:ENST00000654352.1:ENST00000669144.1:ENST00000654086.1:ENST00000654904.1:ENST00000671516.1:ENST00000661782.1:ENST00000670546.1:ENST00000669264.1:ENST00000664090.1:ENST00000668080.1:ENST00000664796.1:ENST00000656479.1:ENST00000671402.1:ENST00000669497.1:ENST00000668279.1:ENST00000653082.1:ENST00000657690.1:ENST00000415294.3:ENST00000655206.1:ENST00000657324.1:ENST00000669840.1:ENST00000670429.1:ENST00000658151.1:ENST00000667534.1:ENST00000668966.1	lncRNA	lncRNA	lncRNA	lncRNA	1	88	2	4.06657	4.96768	5.86879	1.0135e-4	5.10925e-5	0.00906611	0.00585477
chr22	46822399	46822499	7535791	0	+	0.43	(0.408,0.44]	chr22	770583	244	INTRON	INTRON	TBC1D22A	ENSG00000054611.14	ENST00000380995.5:ENST00000337137.9:ENST00000407381.7:ENST00000355704.7:ENST00000394449.6:ENST00000441162.5:ENST00000406733.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	117	2	3.63226	4.967555	6.30285	2.75919e-5	1.14977e-5	0.00414987	0.00268333
chr1	66934503	66934601	139532	0	+	0.479592	(0.476,0.515]	chr1	15646	13	INTRON	INTRON	MIER1	ENSG00000198160.15	ENST00000355977.10:ENST00000371018.7:ENST00000357692.6:ENST00000371016.5:ENST00000371014.5:ENST00000371012.6:ENST00000401041.6:ENST00000355356.3:ENST00000401042.7:ENST00000479067.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	118	2	3.77538	4.96727	6.15916	1.89343e-5	1.16476e-5	0.00354138	0.00251968
chr15	90195861	90195961	6098044	0	+	0.5	(0.476,0.515]	chr15	580416	24	INTRON	INTRON	SEMA4B	ENSG00000185033.15	ENST00000559322.5:ENST00000559300.5:ENST00000561085.1:ENST00000332496.10:ENST00000558895.5:ENST00000559792.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	45	2	4.526	4.966844999999999	5.40769	0.00699701	6.23078e-4	0.0754576	0.0229151
chr5	66017423	66017523	2371763	0	+	0.31	(0.28,0.32]	chr5	228522	23	INTRON	INTRON	ERBIN	ENSG00000112851.15	ENST00000380943.6:ENST00000416865.6:ENST00000380935.5:ENST00000284037.10:ENST00000380938.6:ENST00000511297.5:ENST00000506030.5:ENST00000508515.1	protein_coding	protein_coding	protein_coding	protein_coding	0	46	2	4.73474	4.96658	5.19842	0.0162835	0.00152333	0.101453	0.0360297
chr5	113528982	113529082	2454011	0	+	0.3	(0.28,0.32]	chr5	235157	18	INTRON	INTRON	YTHDC2	ENSG00000047188.16	ENST00000161863.9:ENST00000503857.5:ENST00000515883.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	46	2	4.83165	4.96617	5.10069	0.00610574	0.00527257	0.0676501	0.0656295
chr12	122578383	122578476	5241127	0	+	0.419355	(0.408,0.44]	chr12	497735	2	INTRON	INTRON	KNTC1	ENSG00000184445.12	ENST00000450485.6:ENST00000333479.12	protein_coding	protein_coding	protein_coding	protein_coding	1	88	2	4.09715	4.965885	5.83462	1.18776e-4	4.3007e-5	0.00987467	0.00530629
chr10	77840685	77840785	4653922	0	-	0.48	(0.476,0.515]	chr10	428726	44	INTRON	INTRON	DLG5	ENSG00000151208.17	ENST00000372391.7:ENST00000475613.6:ENST00000468332.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	43	2	4.6932	4.965445	5.23769	0.00753088	5.17244e-4	0.074841	0.0203753
chr4	72568853	72568945	2158741	0	-	0.369565	(0.35,0.378]	chr4	212554	2	UTR5	UTR5:EXON_MRNA	ADAMTS3	ENSG00000156140.10	ENST00000286657.10	protein_coding	protein_coding	protein_coding	protein_coding	0	45	2	4.66929	4.96527	5.26125	0.00541617	0.00191117	0.066545000000000007	0.03947
chr1	202367926	202368026	292951	0	+	0.4	(0.378,0.408]	chr1	33758	184	INTRON	INTRON	PPP1R12B	ENSG00000077157.22	ENST00000391959.5:ENST00000608999.6:ENST00000480184.5:ENST00000356764.6:ENST00000476364.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	43	2	4.87762	4.964265	5.05091	0.00553849	0.00118558	0.0648867	0.031662
chr5	139401254	139401322	2736468	0	-	0.397059	(0.378,0.408]	chr5	257642	1	SS5_PROX	SS5_PROX:INTRON	SPATA24	ENSG00000170469.11	ENST00000302091.9:ENST00000450845.7:ENST00000512761.5:ENST00000514983.5	protein_coding	protein_coding	protein_coding	protein_coding	0	43	2	4.9425	4.9641850000000005	4.98587	0.00452675	0.00152268	0.0595107	0.0360297
chrX	44931184	44931284	7649182	0	+	0.51	(0.476,0.515]	chrX	782726	568	INTRON	INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000675440.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000621147.5:ENST00000475233.1:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	44	2	4.53023	4.963660000000001	5.39709	0.0119748	2.55871e-4	0.0899583	0.0142249
chr7	136132478	136132578	3431578	0	+	0.36	(0.35,0.378]	chr7	319911	149	INTRON	INTRON	ENSG00000232053	ENSG00000232053.7	ENST00000657456.1:ENST00000668062.1:ENST00000668668.1:ENST00000445293.6:ENST00000659747.1:ENST00000668896.1:ENST00000435996.1	lncRNA	lncRNA	lncRNA	lncRNA	1	92	2	4.06023	4.963604999999999	5.86698	1.76496e-4	6.28901e-5	0.01216	0.00658818
chr16	69385210	69385290	6508197	0	-	0.45	(0.44,0.476]	chr16	630133	1	SS5_PROX	SS5_PROX:INTRON	TERF2	ENSG00000132604.11	ENST00000254942.8:ENST00000566750.5:ENST00000569611.6:ENST00000567296.6:ENST00000569280.1:ENST00000567841.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	43	2	4.78293	4.963355	5.14378	0.00292033	0.00184943	0.0494641	0.0388609
chr7	6049504	6049597	3476151	0	-	0.408602	(0.408,0.44]	chr7	325233	2	SS5_PROX	SS5_PROX:INTRON	EIF2AK1	ENSG00000086232.13	ENST00000199389.11:ENST00000431744.5:ENST00000463213.5:ENST00000446699.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	45	2	4.42713	4.963235	5.49934	0.0173083	1.5076e-4	0.104099	0.0106137
chrX	3851737	3851836	7747101	0	-	0.444444	(0.44,0.476]	chrX	793099	10	INTRON	INTRON	ENSG00000285756	ENSG00000285756.2	ENST00000648217.1:ENST00000650456.1:ENST00000657698.1	lncRNA	lncRNA	lncRNA	lncRNA	0	46	2	4.43525	4.96311	5.49097	0.00897296	4.8612e-4	0.0849778	0.0203841
chr1	246553192	246553291	680854	0	-	0.363636	(0.35,0.378]	chr1	79810	15	INTRON	INTRON	TFB2M	ENSG00000162851.8	ENST00000366514.5	protein_coding	protein_coding	protein_coding	protein_coding	0	44	2	4.82377	4.963015	5.10226	0.00327038	0.00325499	0.0524329	0.0508595
chr4	34325630	34325730	2125562	0	-	0.37	(0.35,0.378]	chr4	209578	560	INTRON	INTRON	LINC02484	ENSG00000248685.6	ENST00000658479.1	lncRNA	lncRNA	lncRNA	lncRNA	0	44	2	4.82377	4.963015	5.10226	0.00327038	0.00325499	0.0524329	0.0508595
chr10	32344711	32344811	4591620	0	-	0.51	(0.476,0.515]	chr10	423379	384	INTRON	INTRON	EPC1	ENSG00000120616.16	ENST00000375110.6:ENST00000319778.11:ENST00000667706.1:ENST00000263062.8:ENST00000479380.2:ENST00000495790.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	44	2	4.61519	4.962885	5.31058	0.00528365	9.15544e-4	0.0656295	0.0278396
chr2	32413181	32413280	731347	0	+	0.474747	(0.44,0.476]	chr2	84319	63	INTRON	INTRON	BIRC6	ENSG00000115760.15	ENST00000421745.7:ENST00000648282.1	protein_coding	protein_coding	protein_coding	protein_coding	0	44	2	4.5227	4.96211	5.40152	0.0128818	2.39829e-4	0.0926667	0.0136403
chr12	53467666	53467704	5143054	0	+	0.210526	[0,0.28]	chr12	485434	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PCBP2	ENSG00000197111.16	ENST00000546463.6:ENST00000437231.5:ENST00000447282.5:ENST00000359282.9:ENST00000549863.5:ENST00000359462.9:ENST00000552296.6:ENST00000552819.5:ENST00000455667.7:ENST00000439930.7:ENST00000548933.5:ENST00000562264.5:ENST00000550585.5:ENST00000553064.6:ENST00000547859.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	48	2	4.62084	4.96097	5.3011	0.0313633	0.00185843	0.13151	0.039946
chrX	45047530	45047629	7650355	0	+	0.222222	[0,0.28]	chrX	782770	95	INTRON	INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000675440.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000621147.5:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1:ENST00000675525.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	47	2	4.88625	4.960965	5.03568	0.0173315	0.00446141	0.104099	0.0610799
chr1	42189904	42190003	430971	0	-	0.383838	(0.378,0.408]	chr1	52280	1	INTRON	INTRON	FOXJ3	ENSG00000198815.9	ENST00000372573.5:ENST00000372572.5:ENST00000361776.5:ENST00000545068.5:ENST00000361346.6	protein_coding	protein_coding	protein_coding	protein_coding	1	91	2	4.28727	4.96095	5.63463	3.59226e-4	1.52039e-5	0.0175484	0.00293131
chr3	49373842	49373940	1693679	0	-	0.27551	[0,0.28]	chr3	173699	1	INTRON	INTRON	RHOA	ENSG00000067560.14	ENST00000678200.1:ENST00000422781.6:ENST00000676712.2:ENST00000678921.2:ENST00000445425.6:ENST00000454011.7:ENST00000418115.6:ENST00000679208.1:ENST00000677684.1:ENST00000431929.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	47	2	4.94561	4.9609000000000005	4.97619	0.0150263	0.00535756	0.0994339	0.0663076
chr7	105133900	105133999	3601336	0	-	0.414141	(0.408,0.44]	chr7	336081	4	INTRON	INTRON	SRPK2	ENSG00000135250.17	ENST00000393651.8:ENST00000357311.7:ENST00000466917.1:ENST00000485455.1:ENST00000477925.5:ENST00000489828.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	43	2	4.67894	4.960805000000001	5.24267	0.0087648	4.83767e-4	0.0788605	0.0199261
chr2	183125196	183125295	938488	0	+	0.383838	(0.378,0.408]	chr2	102970	3	INTRON	INTRON	NUP35	ENSG00000163002.13	ENST00000442895.6:ENST00000409798.5:ENST00000446612.5:ENST00000455063.5:ENST00000497330.5:ENST00000374930.7:ENST00000479162.5:ENST00000295119.9:ENST00000452137.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	44	2	4.69169	4.960465	5.22924	0.00432302	0.00172721	0.0599409	0.0374701
chr16	16627783	16627883	6312141	0	+	0.42	(0.408,0.44]	chr16	604102	149	INTRON	INTRON	ENSG00000260126:ENSG00000287905	ENSG00000260126.2:ENSG00000287905.1	ENST00000567465.2:ENST00000660246.1	lncRNA	lncRNA	lncRNA	lncRNA	0	43	2	4.78348	4.96025	5.13702	0.00290352	0.00202889	0.0494641	0.04086
chr3	185597993	185598093	1585389	0	+	0.42	(0.408,0.44]	chr3	164124	2	SS3_PROX	SS3_PROX:INTRON	SENP2	ENSG00000163904.13	ENST00000430355.5:ENST00000465201.5:ENST00000453532.5:ENST00000296257.10:ENST00000413407.5:ENST00000439684.5:ENST00000458551.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	43	2	4.78348	4.96025	5.13702	0.00290352	0.00202889	0.0494641	0.04086
chrX	134462425	134462525	7724092	0	+	0.52	(0.515,0.57]	chrX	790154	15	INTRON	INTRON	HPRT1	ENSG00000165704.15	ENST00000298556.8:ENST00000462974.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	84	2	3.8108	4.959895	6.10899	2.17298e-4	2.25436e-6	0.0135077	9.42151e-4
chr19	36749530	36749628	7175631	0	-	0.428571	(0.408,0.44]	chr19	725127	18	CDS	CDS:EXON_MRNA:INTRON	ZNF850	ENSG00000267041.6	ENST00000589390.5:ENST00000614887.4:ENST00000591344.2	protein_coding	protein_coding	protein_coding	protein_coding	0	44	2	4.51604	4.95906	5.40208	0.0137419	2.37882e-4	0.0949306	0.0136195
chr2	169804086	169804185	908046	0	+	0.292929	(0.28,0.32]	chr2	100172	27	INTRON	INTRON	SSB	ENSG00000138385.16	ENST00000422006.5:ENST00000260956.9:ENST00000417292.5:ENST00000413002.5:ENST00000461708.1:ENST00000409333.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	48	2	4.4263	4.95845	5.4906	0.0330296	4.89126e-4	0.133816	0.0199693
chr4	139473822	139473922	2051116	0	+	0.16	[0,0.28]	chr4	203443	8	UTR3	UTR3:EXON_MRNA	RAB33B	ENSG00000172007.7	ENST00000652268.1:ENST00000305626.6	protein_coding	protein_coding	protein_coding	protein_coding	0	47	2	4.91414	4.958385	5.00263	0.013055	0.0064519	0.093385	0.0730725
chr2	86131306	86131406	822642	0	+	0.58	(0.57,1]	chr2	91819	2	SS5_PROX	SS5_PROX:INTRON	PTCD3	ENSG00000132300.19	ENST00000254630.12:ENST00000464541.5:ENST00000476215.5:ENST00000487043.5:ENST00000469585.5:ENST00000493430.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	61	2	4.32564	4.958055	5.59047	5.22506e-6	3.96927e-6	0.00156931	0.00143365
chr3	33050076	33050174	1650678	0	-	0.346939	(0.32,0.35]	chr3	169237	35	INTRON	INTRON	GLB1	ENSG00000170266.16	ENST00000399402.7:ENST00000307363.10:ENST00000307377.12:ENST00000482097.5:ENST00000485698.5:ENST00000498537.5:ENST00000415454.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	154	2	3.44434	4.9579	6.47146	1.98095e-5	1.70601e-5	0.00343249	0.00330681
chr2	101720633	101720733	836288	0	+	0.32	(0.28,0.32]	chr2	93900	217	INTRON	INTRON	MAP4K4	ENSG00000071054.17	ENST00000427603.5:ENST00000324219.9:ENST00000350878.9:ENST00000425019.6:ENST00000625522.3:ENST00000413150.6:ENST00000634702.1:ENST00000456652.5:ENST00000347699.8:ENST00000417294.5	protein_coding	protein_coding	protein_coding	protein_coding	0	46	2	4.76031	4.956944999999999	5.15358	0.00656106	0.0052282	0.0735539	0.0633615
chr7	149552419	149552513	3671898	0	-	0.308511	(0.28,0.32]	chr7	340817	2	SS5_PROX	SS5_PROX:INTRON	ZNF767P	ENSG00000133624.14	ENST00000463567.5:ENST00000472212.5:ENST00000684939.1:ENST00000690388.1:ENST00000486492.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	46	2	4.76031	4.956944999999999	5.15358	0.00656106	0.0052282	0.0735539	0.0633615
chr1	112955175	112955275	524134	0	-	0.3	(0.28,0.32]	chr1	61696	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	SLC16A1	ENSG00000155380.13	ENST00000679803.1:ENST00000369626.8:ENST00000538576.5:ENST00000429288.2:ENST00000458229.6:ENST00000679846.1:ENST00000478835.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	138	2	3.11673	4.956805	6.79688	6.61685e-4	7.14184e-6	0.0232856	0.00201099
chrY	11198769	11198868	7930000	0	-	0.292929	(0.28,0.32]	chrY	807176	353	INTRON	INTRON	ENSG00000278212	ENSG00000278212.3	ENST00000652671.1:ENST00000651211.2:ENST00000687423.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	49	2	4.4334	4.955595	5.47779	0.0163355	0.00187048	0.109464	0.0390476
chr1	47296742	47296840	445931	0	-	0.489796	(0.476,0.515]	chr1	54045	5	INTRON	INTRON	STIL	ENSG00000123473.17	ENST00000360380.7:ENST00000371877.8:ENST00000337817.10:ENST00000682977.1:ENST00000396221.6:ENST00000447475.7:ENST00000436811.2:ENST00000682165.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	159	2	3.20158	4.95533	6.70908	1.82809e-5	8.26993e-7	0.00327543	5.58079e-4
chr17	70019026	70019091	6827632	0	-	0.4	(0.378,0.408]	chr17	674983	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ENSG00000230258	ENSG00000230258.6	ENST00000435112.5:ENST00000587325.1	lncRNA	lncRNA	lncRNA	lncRNA	0	43	2	4.84627	4.955195	5.06412	0.0030522	0.00254319	0.0493883	0.0465056
chr21	44014355	44014454	7415052	0	+	0.454545	(0.44,0.476]	chr21	755783	14	INTRON	INTRON	TRAPPC10	ENSG00000160218.13	ENST00000291574.9:ENST00000380221.7:ENST00000422875.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	87	2	4.03385	4.95474	5.87563	8.84961e-5	6.14604e-5	0.00842626	0.0064891
chr1	109218324	109218423	179636	0	+	0.313131	(0.28,0.32]	chr1	19612	33	INTRON	INTRON	SARS1	ENSG00000031698.13	ENST00000234677.7:ENST00000477544.5:ENST00000369923.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	47	2	4.50981	4.954715	5.39962	0.0275554	7.06751e-4	0.123904	0.0241881
chr1	243213558	243213658	668298	0	-	0.3	(0.28,0.32]	chr1	79311	12	INTRON	INTRON	CEP170	ENSG00000143702.16	ENST00000366544.5:ENST00000366543.5:ENST00000366542.6:ENST00000522191.5:ENST00000523424.5:ENST00000522522.5:ENST00000522995.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	47	2	4.50981	4.954715	5.39962	0.0275554	7.06751e-4	0.123904	0.0241881
chr10	70413726	70413825	4447171	0	+	0.242424	[0,0.28]	chr10	410345	88	INTRON	INTRON	EIF4EBP2	ENSG00000148730.7	ENST00000373218.5	protein_coding	protein_coding	protein_coding	protein_coding	0	47	2	4.75964	4.953705	5.14777	0.0232081	0.00311898	0.118148	0.0512673
chr7	75459610	75459710	3558663	0	-	0.18	[0,0.28]	chr7	331545	170	INTRON	INTRON	POM121C	ENSG00000272391.6	ENST00000615331.5:ENST00000398379.2	protein_coding	protein_coding	protein_coding	protein_coding	0	47	2	4.75964	4.953705	5.14777	0.0232081	0.00311898	0.118148	0.0512673
chr20	49708777	49708877	7353577	0	-	0.57	(0.515,0.57]	chr20	749846	517	INTRON	INTRON	B4GALT5	ENSG00000158470.5	ENST00000371711.4	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	4.68568	4.953545	5.22141	0.00270027	6.44141e-4	0.0479115	0.0231685
chr12	121797033	121797130	5439440	0	-	0.505155	(0.476,0.515]	chr12	520128	4	INTRON	INTRON	RHOF:LINC01089	ENSG00000139725.8:ENSG00000212694.8	ENST00000546227.5:ENST00000541657.5:ENST00000545544.1:ENST00000429892.5:ENST00000542933.5:ENST00000537157.5:ENST00000428029.6:ENST00000541694.5:ENST00000543167.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA:processed_transcript	1	87	2	3.99016	4.953455	5.91675	7.96444e-5	6.46096e-5	0.00742553	0.00711194
chr1	32195892	32195992	64330	0	+	0.31	(0.28,0.32]	chr1	8208	8	UTR3	UTR3:EXON_MRNA	TXLNA	ENSG00000084652.16	ENST00000373610.8:ENST00000373609.1	protein_coding	protein_coding	protein_coding	protein_coding	1	110	2	3.43158	4.9530199999999995	6.47446	0.00244075	3.92821e-6	0.0445752	0.00131614
chr16	11904734	11904833	6446299	0	-	0.353535	(0.35,0.378]	chr16	621130	7	INTRON	INTRON	GSPT1	ENSG00000103342.13	ENST00000434724.7:ENST00000439887.6:ENST00000420576.6:ENST00000568849.5:ENST00000562169.1	protein_coding	protein_coding	protein_coding	protein_coding	0	44	2	4.7486	4.952915	5.15723	0.00418965	0.00272706	0.0591344	0.0467523
chr17	32350552	32350652	6597977	0	+	0.6	(0.57,1]	chr17	641876	2	SS5_PROX	SS5_PROX:INTRON	ZNF207	ENSG00000010244.19	ENST00000321233.10:ENST00000394673.6:ENST00000394670.9:ENST00000579634.5:ENST00000580759.5:ENST00000342555.10:ENST00000577908.5:ENST00000394679.9:ENST00000582165.1:ENST00000577324.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	96	2	3.79832	4.95284	6.10736	3.47703e-7	1.15554e-7	3.20681e-4	1.51318e-4
chr4	53242138	53242238	2144099	0	-	0.48	(0.476,0.515]	chr4	211165	962	INTRON	INTRON	SCFD2	ENSG00000184178.17	ENST00000401642.8:ENST00000388940.8	protein_coding	protein_coding	protein_coding	protein_coding	0	43	2	4.69918	4.952815	5.20645	0.00400966	0.00136049	0.057767	0.0336321
chr6	105167656	105167756	3173391	0	-	0.51	(0.476,0.515]	chr6	296021	40	INTRON	INTRON	POPDC3	ENSG00000132429.10	ENST00000254765.4:ENST00000474760.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	43	2	4.69918	4.952815	5.20645	0.00400966	0.00136049	0.057767	0.0336321
chr1	52402628	52402728	457055	0	-	0.53	(0.515,0.57]	chr1	54917	4	SS3_PROX	SS3_PROX:INTRON	ORC1	ENSG00000085840.13	ENST00000371568.8:ENST00000371566.1	protein_coding	protein_coding	protein_coding	protein_coding	0	40	2	4.90912	4.952735	4.99635	0.0021669	8.06602e-4	0.0417866	0.0258804
chr1	29069585	29069682	60530	0	+	0.206186	[0,0.28]	chr1	7745	4	UTR3	UTR3:EXON_MRNA:INTRON	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000647918.1:ENST00000646800.1:ENST00000644342.1:ENST00000646189.1:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000373798.5:ENST00000644600.1:ENST00000649674.1:ENST00000643173.1:ENST00000343067.9:ENST00000644780.1:ENST00000650265.1:ENST00000643604.1:ENST00000349460.9:ENST00000645111.1:ENST00000643302.1:ENST00000636666.1:ENST00000644848.1:ENST00000646871.1:ENST00000488277.1:ENST00000490308.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	174	2	3.1358	4.952545	6.76929	1.97979e-4	2.72755e-5	0.0122787	0.00430583
chr1	213137482	213137582	311569	0	+	0.51	(0.476,0.515]	chr1	35945	72	INTRON	INTRON	RPS6KC1	ENSG00000136643.12	ENST00000615329.4:ENST00000543354.5:ENST00000614059.4:ENST00000543470.5:ENST00000366960.8:ENST00000366959.4:ENST00000490299.5:ENST00000468069.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	149	2	2.97991	4.952235	6.92456	3.10641e-4	2.76616e-8	0.0162055	6.40733e-5
chrX	70135216	70135316	7674985	0	+	0.34	(0.32,0.35]	chrX	785534	4	SS5_PROX	SS5_PROX:INTRON	IGBP1	ENSG00000089289.16	ENST00000356413.5:ENST00000342206.10	protein_coding	protein_coding	protein_coding	protein_coding	0	45	2	4.7197	4.951924999999999	5.18415	0.00568521	0.00333629	0.0678837	0.0512081
chr3	25748906	25749005	1642491	0	-	0.242424	[0,0.28]	chr3	168658	81	INTRON	INTRON	NGLY1	ENSG00000151092.18	ENST00000280700.10:ENST00000428257.5:ENST00000675217.1:ENST00000676225.1:ENST00000493324.5:ENST00000396649.7:ENST00000675178.1:ENST00000675680.1:ENST00000308710.9:ENST00000280699.13:ENST00000674841.1:ENST00000675234.1:ENST00000463611.2:ENST00000417874.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	118	2	3.52594	4.95182	6.3777	0.00224145	1.8994e-5	0.0423923	0.00333235
chr7	44879858	44879957	3528722	0	-	0.292929	(0.28,0.32]	chr7	329128	37	UTR3	UTR3:EXON_MRNA	PURB	ENSG00000146676.10	ENST00000395699.5	protein_coding	protein_coding	protein_coding	protein_coding	1	109	2	3.8092800000000002	4.9517050000000005	6.09413	5.62738e-4	3.04445e-5	0.0219303	0.00440486
chr12	93384123	93384223	5189002	0	+	0.46	(0.44,0.476]	chr12	490788	27	INTRON	INTRON	NUDT4	ENSG00000173598.14	ENST00000337179.9:ENST00000415493.7:ENST00000549992.5:ENST00000550056.5:ENST00000547014.5:ENST00000548662.5:ENST00000546925.1	protein_coding	protein_coding	protein_coding	protein_coding	4	161	2	3.40619	4.951575	6.49696	4.5072e-6	3.42881e-6	0.00143349	0.00131852
chr5	141588023	141588123	2739878	0	-	0.43	(0.408,0.44]	chr5	258163	4	SS5_PROX	SS5_PROX:INTRON	DIAPH1	ENSG00000131504.18	ENST00000647433.1:ENST00000389054.8:ENST00000518047.5:ENST00000523100.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	88	2	4.21338	4.95132	5.68926	2.2853e-4	2.19708e-5	0.0138641	0.00364987
chr10	86807484	86807584	4479906	0	+	0.47	(0.44,0.476]	chr10	412292	502	INTRON	INTRON	BMPR1A	ENSG00000107779.14	ENST00000638429.1:ENST00000372037.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	43	2	4.70355	4.951175	5.1988	0.00383786	0.00151532	0.0562562	0.0352794
chr12	103793836	103793936	5401329	0	-	0.46	(0.44,0.476]	chr12	515246	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NT5DC3	ENSG00000111696.12	ENST00000392876.8	protein_coding	protein_coding	protein_coding	protein_coding	0	43	2	4.70355	4.951175	5.1988	0.00383786	0.00151532	0.0562562	0.0352794
chr17	57308833	57308932	6633276	0	+	0.464646	(0.44,0.476]	chr17	648017	137	INTRON	INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000581776.5:ENST00000674961.1:ENST00000582453.5:ENST00000675656.1:ENST00000322684.7:ENST00000579590.5:ENST00000676073.1:ENST00000675822.1:ENST00000442934.6:ENST00000579180.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	43	2	4.70355	4.951175	5.1988	0.00383786	0.00151532	0.0562562	0.0352794
chr19	9837431	9837527	7011955	0	+	0.520833	(0.515,0.57]	chr19	696358	22	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	PIN1	ENSG00000127445.14	ENST00000247970.9:ENST00000587625.5:ENST00000586025.5:ENST00000590540.5:ENST00000588695.5:ENST00000586352.5:ENST00000585442.5:ENST00000589058.5:ENST00000380889.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	40	2	4.92473	4.950975	4.97722	0.00168681	0.00108255	0.0370386	0.0300133
chr18	2673914	2674014	6865046	0	+	0.26	[0,0.28]	chr18	679960	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	SMCHD1	ENSG00000101596.17	ENST00000320876.11:ENST00000688342.1:ENST00000684915.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	51	2	4.29536	4.950635	5.60591	0.0590175	6.01442e-4	0.167915	0.0223465
chr7	106277877	106277977	3608540	0	-	0.21	[0,0.28]	chr7	336542	3	INTRON	INTRON	NAMPT	ENSG00000105835.13	ENST00000681491.1:ENST00000222553.8:ENST00000681494.1:ENST00000680708.1:ENST00000681653.1:ENST00000681391.1:ENST00000680991.1:ENST00000680077.1:ENST00000681456.1:ENST00000680675.1:ENST00000681550.1:ENST00000680864.1:ENST00000680584.1:ENST00000680669.1:ENST00000424768.2:ENST00000681255.1:ENST00000679873.1:ENST00000679643.1:ENST00000681878.1:ENST00000489732.2:ENST00000679951.1:ENST00000680823.1:ENST00000680468.1:ENST00000681936.1:ENST00000680152.1:ENST00000681887.1:ENST00000680129.1:ENST00000680786.1:ENST00000681223.1:ENST00000679717.1:ENST00000354289.9:ENST00000491027.6:ENST00000393618.6:ENST00000489358.5:ENST00000441045.6:ENST00000417537.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	51	2	4.29536	4.950635	5.60591	0.0590175	6.01442e-4	0.167915	0.0223465
chr8	55947823	55947923	3755020	0	+	0.51	(0.476,0.515]	chr8	349272	1	SS5_PROX	SS5_PROX:INTRON	LYN	ENSG00000254087.8	ENST00000519728.6:ENST00000520220.6:ENST00000520050.1	protein_coding	protein_coding	protein_coding	protein_coding	0	42	2	4.90761	4.950515	4.99342	0.00386428	0.00139274	0.0542786	0.0341261
chr21	37075061	37075160	7404838	0	+	0.242424	[0,0.28]	chr21	754521	12	INTRON	INTRON	TTC3	ENSG00000182670.14	ENST00000492275.6:ENST00000418766.6:ENST00000485402.5:ENST00000450533.6:ENST00000438055.5:ENST00000696812.1:ENST00000696811.1:ENST00000463216.6:ENST00000481605.6:ENST00000540756.5:ENST00000494243.5:ENST00000399010.5:ENST00000411496.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	107	2	3.86326	4.94946	6.03566	5.43045e-4	3.23716e-4	0.0215026	0.0159645
chr10	69169582	69169672	4445012	0	+	0.477778	(0.476,0.515]	chr10	410060	6	INTRON	INTRON	VPS26A	ENSG00000122958.15	ENST00000373382.5:ENST00000395098.5:ENST00000263559.11:ENST00000490696.5:ENST00000489794.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	92	2	3.70882	4.94926	6.1897	4.74495e-4	3.83137e-6	0.0201638	0.00129308
chr1	145783638	145783738	540250	0	-	0.38	(0.378,0.408]	chr1	63364	99	INTRON	INTRON	RNF115	ENSG00000265491.5	ENST00000582693.5	protein_coding	protein_coding	protein_coding	protein_coding	0	45	2	4.41169	4.949205	5.48672	0.0199606	1.83012e-4	0.109608	0.01176
chr11	120421438	120421526	4877056	0	+	0.477273	(0.476,0.515]	chr11	455822	2	SS3_PROX	SS3_PROX:INTRON	ARHGEF12	ENSG00000196914.9	ENST00000397843.7:ENST00000356641.7:ENST00000532993.5:ENST00000529970.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	42	2	4.83962	4.949045	5.05847	0.00480934	0.00108081	0.0602209	0.0300133
chr22	20399510	20399594	7479129	0	+	0.261905	[0,0.28]	chr22	762915	1	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	ZNF74	ENSG00000185252.19	ENST00000611540.4:ENST00000403682.7:ENST00000400451.7:ENST00000357502.5:ENST00000493734.5:ENST00000420626.1:ENST00000437275.5:ENST00000405993.2:ENST00000476678.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	274	2	2.66208	4.948955	7.23583	6.04805e-4	1.56229e-7	0.0226059	1.81796e-4
chr10	133307537	133307635	4717669	0	-	0.459184	(0.44,0.476]	chr10	435513	42	INTRON	INTRON	TUBGCP2	ENSG00000130640.15	ENST00000252936.8:ENST00000682123.1:ENST00000683612.1:ENST00000683786.1:ENST00000682515.1:ENST00000682905.1:ENST00000684478.1:ENST00000682161.1:ENST00000682332.1:ENST00000684487.1:ENST00000683673.1:ENST00000682093.1:ENST00000683014.1:ENST00000682631.1:ENST00000683060.1:ENST00000683383.1:ENST00000682990.1:ENST00000417178.7:ENST00000482278.5:ENST00000543663.6:ENST00000683704.1:ENST00000683552.1:ENST00000684421.1:ENST00000424450.2:ENST00000470829.2:ENST00000683031.1:ENST00000487796.2:ENST00000480198.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	42	2	4.9	4.94891	4.99782	0.00423315	0.0013223	0.0572185	0.0333932
chr16	89514495	89514571	6420401	0	+	0.513158	(0.476,0.515]	chr16	616210	3	EXON_LNCRNA	EXON_LNCRNA:INTRON	SPG7	ENSG00000197912.16	ENST00000647079.1:ENST00000646303.1:ENST00000643649.1:ENST00000643307.1:ENST00000566371.6:ENST00000644498.1:ENST00000645897.1:ENST00000643668.1:ENST00000644225.1:ENST00000645818.2:ENST00000645977.1:ENST00000645063.1:ENST00000646263.1:ENST00000643724.1:ENST00000644781.1:ENST00000644901.1:ENST00000645042.1:ENST00000646531.1:ENST00000646930.1:ENST00000569363.2:ENST00000642436.1:ENST00000644210.1:ENST00000564047.2:ENST00000646589.1:ENST00000268704.7:ENST00000646826.1:ENST00000646716.1:ENST00000643345.1:ENST00000341316.6:ENST00000645533.1:ENST00000646958.1:ENST00000642371.1:ENST00000643105.1:ENST00000645354.1:ENST00000643957.1:ENST00000642334.1:ENST00000647227.1:ENST00000562775.2:ENST00000568151.1:ENST00000646445.1:ENST00000564409.2:ENST00000643954.1:ENST00000646399.1:ENST00000644671.1:ENST00000643178.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	42	2	4.92529	4.94891	4.97253	0.00311573	0.00180221	0.0498063	0.0392772
chr16	89648078	89648178	6543683	0	-	0.71	(0.57,1]	chr16	634307	5	CDS	CDS:UTR3:EXON_MRNA:INTRON	CHMP1A	ENSG00000131165.16	ENST00000675909.1:ENST00000397901.8:ENST00000676355.1:ENST00000675161.1:ENST00000676402.1:ENST00000675016.1:ENST00000551981.6:ENST00000675309.1:ENST00000675952.1:ENST00000676342.1:ENST00000535997.7:ENST00000674799.1:ENST00000675536.1:ENST00000549328.2:ENST00000675778.1:ENST00000676118.1:ENST00000675076.1:ENST00000549139.5:ENST00000550102.5:ENST00000548650.1:ENST00000547614.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	59	2	4.38136	4.94879	5.51622	1.33983e-5	2.30973e-6	0.00288846	0.00095233100000000005
chr3	158127688	158127788	1538452	0	+	0.33	(0.32,0.35]	chr3	160262	33	INTRON	INTRON	RSRC1	ENSG00000174891.14	ENST00000480820.5:ENST00000494002.5:ENST00000295930.7:ENST00000471994.5:ENST00000683733.1:ENST00000682221.1:ENST00000683831.1:ENST00000683516.1:ENST00000482822.3:ENST00000476899.6:ENST00000464171.5:ENST00000611884.5:ENST00000682164.1:ENST00000684604.1:ENST00000683899.1:ENST00000682500.1:ENST00000684683.1:ENST00000684512.1:ENST00000683394.1:ENST00000684156.1:ENST00000312179.10:ENST00000475278.6:ENST00000480119.5:ENST00000468344.5:ENST00000471911.5:ENST00000683137.1:ENST00000477788.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	44	2	4.89768	4.94845	4.99922	0.00793135	0.00223907	0.076155	0.0435144
chr8	111003051	111003151	4027226	0	-	0.36	(0.35,0.378]	chr8	367844	6	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	LINC01608	ENSG00000253877.6	ENST00000670392.1:ENST00000658597.1:ENST00000662310.1:ENST00000671489.1:ENST00000668858.1:ENST00000669698.1:ENST00000665803.1:ENST00000658028.1:ENST00000664704.1:ENST00000661954.1:ENST00000661561.1:ENST00000658081.1:ENST00000667145.1:ENST00000658119.1:ENST00000524283.5:ENST00000669893.1:ENST00000660015.1:ENST00000668956.1:ENST00000657323.1:ENST00000663408.1:ENST00000653924.1:ENST00000659834.1:ENST00000658508.1:ENST00000669744.1:ENST00000658733.1:ENST00000657532.1:ENST00000665011.1:ENST00000523557.2:ENST00000669997.1	lncRNA	lncRNA	lncRNA	lncRNA	0	47	2	4.29839	4.94843	5.59847	0.0294717	1.39739e-4	0.128055	0.0101825
chr21	43876644	43876744	7413904	0	+	0.4	(0.378,0.408]	chr21	755688	89	INTRON	INTRON	AGPAT3	ENSG00000160216.21	ENST00000291572.13:ENST00000448287.5	protein_coding	protein_coding	protein_coding	protein_coding	0	45	2	4.51854	4.947965	5.37739	0.00748824	0.0010014	0.0772645	0.0288906
chr3	33430638	33430738	1651615	0	-	0.46	(0.44,0.476]	chr3	169400	45	INTRON	INTRON	UBP1	ENSG00000153560.12	ENST00000283629.8:ENST00000447368.6:ENST00000283628.9:ENST00000456378.1:ENST00000496310.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	42	2	4.83202	4.94745	5.06288	0.00525002	0.00102416	0.0633615	0.0294041
chr7	44207722	44207812	3314209	0	+	0.455556	(0.44,0.476]	chr7	307861	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	YKT6	ENSG00000106636.9	ENST00000679020.1:ENST00000678497.1:ENST00000496112.5:ENST00000678359.1:ENST00000447123.6:ENST00000223369.3:ENST00000478411.2:ENST00000679209.1:ENST00000677851.1:ENST00000679310.1:ENST00000677436.1:ENST00000677090.1:ENST00000421621.3:ENST00000463014.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	42	2	4.83202	4.94745	5.06288	0.00525002	0.00102416	0.0633615	0.0294041
chr7	151063701	151063801	3448187	0	+	0.47	(0.44,0.476]	chr7	322076	1	SS3_PROX	SS3_PROX:INTRON	SLC4A2	ENSG00000164889.15	ENST00000483786.5:ENST00000485713.5:ENST00000413384.7:ENST00000494125.1:ENST00000490898.5:ENST00000482950.5:ENST00000463414.5:ENST00000488420.1:ENST00000677246.1:ENST00000392826.6:ENST00000461735.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	42	2	4.92968	4.9472950000000004	4.96491	0.0034249	0.00171443	0.0517761	0.0381936
chr2	151459010	151459110	893721	0	+	0.32	(0.28,0.32]	chr2	99005	1	SS5_PROX	SS5_PROX:INTRON	RIF1	ENSG00000080345.18	ENST00000453091.6:ENST00000428287.6:ENST00000444746.7:ENST00000243326.9:ENST00000430328.6	protein_coding	protein_coding	protein_coding	protein_coding	0	45	2	4.86731	4.946985	5.02666	0.0116253	0.0027935	0.0889104	0.0488769
chr7	104167874	104167972	3600037	0	-	0.295918	(0.28,0.32]	chr7	335963	6	INTRON	INTRON	ORC5	ENSG00000164815.11	ENST00000297431.9:ENST00000422497.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	45	2	4.86731	4.946985	5.02666	0.0116253	0.0027935	0.0889104	0.0488769
chr1	45847474	45847574	94252	0	+	0.34	(0.32,0.35]	chr1	12696	175	INTRON	INTRON	MAST2	ENSG00000086015.23	ENST00000470809.1:ENST00000361297.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	44	2	4.93425	4.94698	4.95971	0.00663522	0.00281048	0.0703181	0.0488779
chr1	207352516	207352615	303586	0	+	0.343434	(0.32,0.35]	chr1	34932	46	INTRON	INTRON	CD55	ENSG00000196352.18	ENST00000695822.1:ENST00000695823.1:ENST00000695826.1:ENST00000695825.1:ENST00000695827.1:ENST00000645323.1:ENST00000391921.9:ENST00000367064.9:ENST00000314754.12:ENST00000644836.1:ENST00000476590.1:ENST00000465534.5:ENST00000618707.2:ENST00000635614.2:ENST00000695831.1:ENST00000634386.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	44	2	4.93425	4.94698	4.95971	0.00663522	0.00281048	0.0703181	0.0488779
chr2	235584824	235584924	1042245	0	+	0.34	(0.32,0.35]	chr2	111222	599	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1:ENST00000402604.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	44	2	4.93425	4.94698	4.95971	0.00663522	0.00281048	0.0703181	0.0488779
chr1	35371226	35371325	69322	0	+	0.525253	(0.515,0.57]	chr1	8759	2	INTRON	INTRON	ZMYM4	ENSG00000146463.12	ENST00000314607.11:ENST00000457946.1	protein_coding	protein_coding	protein_coding	protein_coding	1	84	2	4.06976	4.94694	5.82412	5.5596e-5	1.29371e-5	0.00651834	0.00266147
chr21	21489263	21489363	7383920	0	+	0.32	(0.28,0.32]	chr21	752699	114	INTRON	INTRON	NCAM2	ENSG00000154654.15	ENST00000400546.6:ENST00000284894.8	protein_coding	protein_coding	protein_coding	protein_coding	0	45	2	4.92929	4.946915000000001	4.96454	0.0098607	0.00344078	0.0838128	0.0539802
chr6	85534630	85534722	3150314	0	-	0.315217	(0.28,0.32]	chr6	293728	10	EXON_MRNA	EXON_MRNA:INTRON	ENSG00000271793:SNX14	ENSG00000271793.2:ENSG00000135317.14	ENST00000682083.1:ENST00000683074.1:ENST00000681965.1:ENST00000682171.1:ENST00000684150.1:ENST00000683785.1:ENST00000682497.1:ENST00000684647.1:ENST00000683643.1:ENST00000682023.1:ENST00000682022.1:ENST00000683542.1:ENST00000683126.1:ENST00000683857.1:ENST00000683898.1:ENST00000682854.1:ENST00000682491.1:ENST00000682174.1:ENST00000684239.1:ENST00000682939.1:ENST00000684570.1:ENST00000682057.1:ENST00000682878.1:ENST00000683880.1:ENST00000684422.1:ENST00000682504.1:ENST00000683726.1:ENST00000684680.1:ENST00000683196.1:ENST00000683458.1:ENST00000683803.1:ENST00000684281.1:ENST00000682991.1:ENST00000683754.1:ENST00000683481.1:ENST00000682455.1:ENST00000682034.1:ENST00000684451.1:ENST00000683583.1:ENST00000682776.1:ENST00000683873.1:ENST00000683878.1:ENST00000683195.1:ENST00000682995.1:ENST00000682374.1:ENST00000683698.1:ENST00000682454.1:ENST00000682694.1:ENST00000682412.1:ENST00000514801.2:ENST00000682926.1:ENST00000682682.1:ENST00000346348.7:ENST00000314673.8:ENST00000682633.1:ENST00000683085.1:ENST00000682688.1:ENST00000684319.1:ENST00000683577.1:ENST00000682709.1:ENST00000684299.1:ENST00000682133.1:ENST00000682594.1:ENST00000683473.1:ENST00000682106.1:ENST00000683364.1:ENST00000683436.1:ENST00000684220.1:ENST00000683909.1:ENST00000684118.1:ENST00000681981.1:ENST00000682738.1:ENST00000509338.6:ENST00000684717.1:ENST00000682660.1:ENST00000683073.1:ENST00000515216.6:ENST00000684581.1:ENST00000683479.1:ENST00000682464.1:ENST00000684108.1:ENST00000682514.1:ENST00000684017.1:ENST00000684273.1:ENST00000513865.5:ENST00000505648.5:ENST00000508980.5:ENST00000369627.6:ENST00000503491.5:ENST00000508658.6:ENST00000683097.1:ENST00000683541.1:ENST00000683759.1:ENST00000369635.7:ENST00000506182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	45	2	4.92929	4.946915000000001	4.96454	0.0098607	0.00344078	0.0838128	0.0539802
chr9	83666629	83666727	4272663	0	-	0.306122	(0.28,0.32]	chr9	392949	3	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	UBQLN1	ENSG00000135018.14	ENST00000376395.9:ENST00000533705.5:ENST00000257468.11:ENST00000526134.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	45	2	4.92929	4.946915000000001	4.96454	0.0098607	0.00344078	0.0838128	0.0539802
chr1	153906477	153906577	557602	0	-	0.24	[0,0.28]	chr1	65995	71	INTRON	INTRON	GATAD2B	ENSG00000143614.10	ENST00000368655.5:ENST00000634544.1:ENST00000634408.1:ENST00000634401.1:ENST00000634791.1:ENST00000637331.1:ENST00000636008.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	48	2	4.63523	4.94669	5.25815	0.0139836	0.0066548	0.10247	0.0703807
chr6	140383099	140383199	2970287	0	+	0.28	[0,0.28]	chr6	279019	676	INTRON	INTRON	ENSG00000288714	ENSG00000288714.1	ENST00000684511.1	lncRNA	lncRNA	lncRNA	lncRNA	0	48	2	4.63523	4.94669	5.25815	0.0139836	0.0066548	0.10247	0.0703807
chr13	112544455	112544555	5651270	0	-	0.4	(0.378,0.408]	chr13	538478	166	INTRON	INTRON	TUBGCP3	ENSG00000126216.15	ENST00000261965.8:ENST00000649778.1:ENST00000375669.7:ENST00000462580.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	43	2	4.77105	4.946165	5.12128	0.00330823	0.00251746	0.0527031	0.0446195
chr17	45268952	45269049	6618109	0	+	0.391753	(0.378,0.408]	chr17	645410	20	EXON_LNCRNA	EXON_LNCRNA	MAP3K14-AS1	ENSG00000267278.6	ENST00000657572.1:ENST00000655903.1:ENST00000590100.6:ENST00000586450.6	lncRNA	lncRNA	lncRNA	lncRNA	0	43	2	4.77105	4.946165	5.12128	0.00330823	0.00251746	0.0527031	0.0446195
chr6	87223158	87223255	2913941	0	+	0.556701	(0.515,0.57]	chr6	275310	5	EXON_LNCRNA	EXON_LNCRNA:INTRON	ZNF292	ENSG00000188994.13	ENST00000369577.8:ENST00000369578.6:ENST00000518845.1:ENST00000339907.8:ENST00000496806.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	40	2	4.76244	4.94609	5.12974	0.00362147	4.54392e-4	0.0533855	0.0192381
chr11	77808025	77808125	4995850	0	-	0.45	(0.44,0.476]	chr11	472047	430	INTRON	INTRON	RSF1	ENSG00000048649.14	ENST00000308488.11:ENST00000528095.5:ENST00000440064.2:ENST00000467567.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	115	2	3.5823	4.94601	6.30972	3.73617e-5	9.73578e-6	0.00489903	0.00240387
chr2	96621654	96621753	1181024	0	-	0.242424	[0,0.28]	chr2	126496	15	INTRON	INTRON	KANSL3	ENSG00000114982.19	ENST00000354204.10:ENST00000431828.6:ENST00000487070.5:ENST00000447759.5:ENST00000420155.5:ENST00000670907.1:ENST00000666923.1:ENST00000597150.5:ENST00000444759.5:ENST00000452268.5:ENST00000425656.5:ENST00000448075.1:ENST00000451819.5:ENST00000416138.1:ENST00000418735.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	47	2	4.78142	4.945875	5.11033	0.00991388	0.00943974	0.0861183	0.0838372
chr1	37942564	37942664	426136	0	-	0.42	(0.408,0.44]	chr1	51639	3	SS3_PROX	SS3_PROX:INTRON	INPP5B	ENSG00000204084.13	ENST00000373023.6:ENST00000373024.8:ENST00000458109.6:ENST00000373026.5:ENST00000373021.1:ENST00000491406.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	42	2	4.89327	4.94582	4.99837	0.00458906	0.00131369	0.0595107	0.0333932
chr5	140470743	140470843	2503528	0	+	0.43	(0.408,0.44]	chr5	239218	56	INTRON	INTRON	ANKHD1	ENSG00000131503.21	ENST00000297183.10:ENST00000616482.4:ENST00000360839.7:ENST00000421134.5:ENST00000394723.7:ENST00000394722.7:ENST00000246149.10	protein_coding	protein_coding	protein_coding	protein_coding	0	42	2	4.89327	4.94582	4.99837	0.00458906	0.00131369	0.0595107	0.0333932
chr6	150204950	150205050	2997395	0	+	0.41	(0.408,0.44]	chr6	280443	611	INTRON	INTRON	PPP1R14C	ENSG00000198729.5	ENST00000361131.5	protein_coding	protein_coding	protein_coding	protein_coding	0	42	2	4.89327	4.94582	4.99837	0.00458906	0.00131369	0.0595107	0.0333932
chr5	6719517	6719617	2315896	0	+	0.54	(0.515,0.57]	chr5	224267	40	INTRON	INTRON	TENT4A	ENSG00000112941.14	ENST00000230859.8:ENST00000515721.1:ENST00000631941.2	protein_coding	protein_coding	protein_coding	protein_coding	0	40	2	4.84936	4.945805	5.04225	0.00146032	0.00131841	0.0349875	0.0331539
chr6	136727881	136727981	3234995	0	-	0.52	(0.515,0.57]	chr6	300700	69	INTRON	INTRON	MAP3K5	ENSG00000197442.10	ENST00000359015.5	protein_coding	protein_coding	protein_coding	protein_coding	0	40	2	4.84936	4.945805	5.04225	0.00146032	0.00131841	0.0349875	0.0331539
chr6	156794157	156794257	3007323	0	+	0.29	(0.28,0.32]	chr6	281094	143	INTRON	INTRON	ARID1B	ENSG00000049618.24	ENST00000346085.10:ENST00000636930.2:ENST00000647938.1:ENST00000350026.10:ENST00000674298.1:ENST00000674190.1:ENST00000636748.1:ENST00000494260.2:ENST00000637910.1:ENST00000636607.1:ENST00000414678.7:ENST00000638000.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	46	2	4.58875	4.94564	5.30253	0.0230574	0.0010319	0.118056	0.0294094
chr3	180967650	180967750	1569172	0	+	0.34	(0.32,0.35]	chr3	162434	2	SS3_PROX	SS3_PROX:INTRON	FXR1	ENSG00000114416.18	ENST00000305586.11:ENST00000475315.5:ENST00000357559.9:ENST00000468861.5:ENST00000491062.5:ENST00000445140.6:ENST00000472339.5:ENST00000480918.5:ENST00000498658.5:ENST00000476672.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	46	2	4.45629	4.945444999999999	5.4346	0.0246089	4.09682e-4	0.12011	0.0181306
chr19	23807025	23807125	7042876	0	+	0.3	(0.28,0.32]	chr19	702227	197	INTRON	INTRON	RPSAP58	ENSG00000288920.1	ENST00000471224.5:ENST00000692590.1:ENST00000475499.2:ENST00000686829.1:ENST00000689525.1:ENST00000691397.1:ENST00000688405.1:ENST00000687994.1:ENST00000484897.4:ENST00000685490.1:ENST00000462186.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	46	2	4.68527	4.944935	5.2046	0.00819419	0.00448664	0.0810802	0.0593175
chr5	119293095	119293195	2461841	0	+	0.32	(0.28,0.32]	chr5	235842	238	INTRON	INTRON	TNFAIP8	ENSG00000145779.8	ENST00000274456.6:ENST00000388882.5	protein_coding	protein_coding	protein_coding	protein_coding	0	46	2	4.68527	4.944935	5.2046	0.00819419	0.00448664	0.0810802	0.0593175
chr8	73550371	73550467	3968933	0	-	0.302083	(0.28,0.32]	chr8	364074	9	UTR3	UTR3:EXON_MRNA:INTRON	STAU2	ENSG00000040341.18	ENST00000524300.6:ENST00000522695.5:ENST00000523558.5:ENST00000521210.5:ENST00000523533.5:ENST00000355780.9:ENST00000519961.5:ENST00000521727.5	protein_coding	protein_coding	protein_coding	protein_coding	0	46	2	4.68527	4.944935	5.2046	0.00819419	0.00448664	0.0810802	0.0593175
chr4	128855897	128855997	2044736	0	+	0.48	(0.476,0.515]	chr4	203034	1	SS5_PROX	SS5_PROX:INTRON	JADE1	ENSG00000077684.16	ENST00000226319.11:ENST00000511647.5:ENST00000452328.6:ENST00000512960.5:ENST00000610919.4:ENST00000413543.6:ENST00000611140.4	protein_coding	protein_coding	protein_coding	protein_coding	0	42	2	4.76827	4.944495	5.12072	0.00600704	8.42139e-4	0.0674604	0.0263691
chr2	191938239	191938339	961922	0	+	0.34	(0.32,0.35]	chr2	104337	148	INTRON	INTRON	CAVIN2-AS1	ENSG00000233766.8	ENST00000424116.7:ENST00000428980.6	lncRNA	lncRNA	lncRNA	lncRNA	0	46	2	4.55661	4.944395	5.33218	0.00927858	0.00204346	0.0855292	0.04086
chr2	61464658	61464758	1130493	0	-	0.42	(0.408,0.44]	chr2	121499	435	INTRON	INTRON	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000453133.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	42	2	4.8253	4.944365	5.06343	0.0056738	0.00101725	0.0653997	0.0293497
chr2	73248326	73248426	808472	0	+	0.51	(0.476,0.515]	chr2	90482	4	SS5_PROX	SS5_PROX:INTRON	CCT7	ENSG00000135624.17	ENST00000540468.5:ENST00000539919.5:ENST00000258091.10:ENST00000398422.2:ENST00000473786.5:ENST00000488856.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	42	2	4.85379	4.944224999999999	5.03466	0.00252065	0.00234214	0.0446195	0.0442989
chr4	88258713	88258813	2199297	0	-	0.41	(0.408,0.44]	chr4	215792	12	UTR3	UTR3:EXON_MRNA	PPM1K	ENSG00000163644.15	ENST00000608933.6	protein_coding	protein_coding	protein_coding	protein_coding	0	42	2	4.93024	4.944205	4.95817	0.00372419	0.00170369	0.0535094	0.0381936
chr10	133311129	133311215	4540183	0	+	0.290698	(0.28,0.32]	chr10	419043	5	INTRON	INTRON	ZNF511	ENSG00000198546.15	ENST00000361518.10:ENST00000359035.4:ENST00000463816.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	45	2	4.89962	4.94417	4.98872	0.00838468	0.00425206	0.0774402	0.0595557
chr3	149033741	149033837	1840449	0	-	0.28125	(0.28,0.32]	chr3	185071	10	INTRON	INTRON	HLTF	ENSG00000071794.16	ENST00000310053.10:ENST00000465259.5:ENST00000392912.6:ENST00000494055.5	protein_coding	protein_coding	protein_coding	protein_coding	0	45	2	4.89962	4.94417	4.98872	0.00838468	0.00425206	0.0774402	0.0595557
chr12	133006552	133006650	5252297	0	+	0.397959	(0.378,0.408]	chr12	499634	23	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	ZNF26	ENSG00000198393.8	ENST00000328654.10:ENST00000540238.5:ENST00000544181.5:ENST00000534834.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	44	2	4.60771	4.94402	5.28033	0.00567576	0.00143651	0.0678837	0.0340925
chr14	99972756	99972856	5813040	0	+	0.37	(0.35,0.378]	chr14	551194	3	INTRON	INTRON	EVL	ENSG00000196405.13	ENST00000402714.6	protein_coding	protein_coding	protein_coding	protein_coding	0	43	2	4.8587	4.94351	5.02832	0.00695662	0.00156444	0.0718189	0.0365263
chr15	34398829	34398904	6132870	0	-	0.373333	(0.35,0.378]	chr15	584253	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GOLGA8A	ENSG00000175265.18	ENST00000359187.5:ENST00000473125.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	43	2	4.8587	4.94351	5.02832	0.00695662	0.00156444	0.0718189	0.0365263
chr1	17432078	17432177	384910	0	-	0.353535	(0.35,0.378]	chr1	45493	25	INTRON	INTRON	RCC2	ENSG00000179051.14	ENST00000375436.9:ENST00000375433.3	protein_coding	protein_coding	protein_coding	protein_coding	0	43	2	4.92355	4.9434249999999995	4.9633	0.00573514	0.00198929	0.0657377	0.0411469
chr19	36063063	36063163	7056680	0	+	0.49	(0.476,0.515]	chr19	704371	5	INTRON	INTRON	WDR62	ENSG00000075702.19	ENST00000680489.1:ENST00000378860.8:ENST00000401500.7:ENST00000680564.1:ENST00000680590.1:ENST00000679682.1:ENST00000679714.1:ENST00000680403.1:ENST00000680359.1:ENST00000644764.2:ENST00000680321.1:ENST00000681542.1:ENST00000427823.3:ENST00000589953.2:ENST00000681809.1:ENST00000679757.1:ENST00000680806.1:ENST00000679858.1:ENST00000681625.1:ENST00000587391.6:ENST00000270301.12	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	44	2	4.526	4.942975000000001	5.35995	0.00699701	7.54256e-4	0.0754576	0.0251179
chr10	73735718	73735818	4453713	0	+	0.47	(0.44,0.476]	chr10	411044	1	SS5_PROX	SS5_PROX:INTRON	GLUD1P3	ENSG00000250959.3	ENST00000690102.1:ENST00000686626.1:ENST00000508551.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	42	2	4.85817	4.9426000000000005	5.02703	0.00278015	0.00223254	0.0469265	0.0435144
chr3	94063052	94063126	1458870	0	+	0.445946	(0.44,0.476]	chr3	153336	2	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	NSUN3	ENSG00000178694.10	ENST00000483378.1:ENST00000477077.1:ENST00000476588.5:ENST00000485793.5:ENST00000461625.1:ENST00000314622.9:ENST00000468555.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	42	2	4.85817	4.9426000000000005	5.02703	0.00278015	0.00223254	0.0469265	0.0435144
chr1	111169555	111169655	184025	0	+	0.26	[0,0.28]	chr1	20432	79	INTRON	INTRON	CEPT1	ENSG00000134255.15	ENST00000545121.5:ENST00000498239.5:ENST00000357172.9:ENST00000460443.5:ENST00000478042.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	110	2	4.18646	4.94256	5.69866	0.00175225	6.99068e-5	0.0376491	0.00692586
chr19	6535828	6535924	7006637	0	+	0.34375	(0.32,0.35]	chr19	695211	9	UTR3	UTR3:EXON_MRNA	TNFSF9	ENSG00000125657.5	ENST00000245817.5	protein_coding	protein_coding	protein_coding	protein_coding	3	186	2	3.69862	4.942475	6.18633	1.13266e-5	1.03016e-5	0.00266684	0.00235018
chrX	154765806	154765906	7739312	0	+	0.42	(0.408,0.44]	chrX	792390	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DKC1	ENSG00000130826.19	ENST00000620277.4:ENST00000413910.6:ENST00000426673.6:ENST00000696575.1:ENST00000369550.10:ENST00000696579.1:ENST00000696578.1:ENST00000696577.1:ENST00000696576.1:ENST00000696580.1:ENST00000696581.1:ENST00000696582.1:ENST00000696583.1:ENST00000696627.1:ENST00000473552.1:ENST00000696628.1:ENST00000696584.1:ENST00000696585.1:ENST00000696586.1:ENST00000696587.1:ENST00000696588.1:ENST00000437719.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	139	2	3.50854	4.942235	6.37593	8.84313e-6	7.74278e-6	0.00213707	0.00209799
chr2	24503688	24503788	709381	0	+	0.33	(0.32,0.35]	chr2	82200	111	INTRON	INTRON	NCOA1	ENSG00000084676.16	ENST00000348332.8:ENST00000496333.5:ENST00000406961.5:ENST00000469850.5:ENST00000405141.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	126	2	3.59372	4.9419699999999995	6.29022	4.81573e-5	4.1166e-5	0.00566695	0.00544123
chr16	21902856	21902948	6462300	0	-	0.293478	(0.28,0.32]	chr16	623562	8	INTRON	INTRON	SMG1P4	ENSG00000185710.9	ENST00000523028.5:ENST00000381448.8	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	1	108	2	3.76101	4.94193	6.12285	6.8623e-4	2.62905e-5	0.0240041	0.00402941
chr2	31982293	31982393	1090834	0	-	0.54	(0.515,0.57]	chr2	116913	191	INTRON	INTRON	MEMO1:DPY30	ENSG00000162959.14:ENSG00000162961.14	ENST00000295065.9:ENST00000446765.5:ENST00000404530.6:ENST00000490459.5:ENST00000426310.6:ENST00000413686.1:ENST00000407893.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	84	2	3.62164	4.941885	6.26213	5.41944e-4	8.21984e-7	0.0215026	5.1289e-4
chr12	103774674	103774772	5401126	0	-	0.397959	(0.378,0.408]	chr12	515204	25	UTR3	UTR3:EXON_MRNA:INTRON	NT5DC3	ENSG00000111696.12	ENST00000447799.5:ENST00000392876.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	118	2	3.36411	4.9407049999999995	6.5173	1.36472e-4	4.93978e-6	0.010058	0.00163836
chr7	100354512	100354577	3364535	0	+	0.353846	(0.35,0.378]	chr7	314674	1	INTRON	INTRON	STAG3L5P-PVRIG2P-PILRB:PILRB	ENSG00000272752.6:ENSG00000121716.21	ENST00000310771.8:ENST00000444874.5:ENST00000472646.1:ENST00000452089.5:ENST00000493091.5:ENST00000457519.5:ENST00000448382.5:ENST00000419749.5:ENST00000422808.5:ENST00000438028.5:ENST00000443526.5:ENST00000455145.5:ENST00000431140.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	1	91	2	3.77198	4.94062	6.10926	2.78147e-4	5.85033e-5	0.0148626	0.00668534
chr9	131724511	131724611	4363754	0	-	0.59	(0.57,1]	chr9	401281	149	INTRON	INTRON	RAPGEF1	ENSG00000107263.19	ENST00000372195.5:ENST00000372189.7:ENST00000683357.1:ENST00000438647.3	protein_coding	protein_coding	protein_coding	protein_coding	1	59	2	3.88806	4.940335	5.99261	6.56297e-5	5.25293e-7	0.0067007	4.21981e-4
chr4	24582124	24582221	2118989	0	-	0.350515	(0.35,0.378]	chr4	209262	8	INTRON	INTRON	DHX15	ENSG00000109606.13	ENST00000336812.5:ENST00000511553.5:ENST00000513092.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	44	2	4.66929	4.939735000000001	5.21018	0.00541617	0.00228003	0.066545000000000007	0.0426265
chr3	47470397	47470495	1682803	0	-	0.428571	(0.408,0.44]	chr3	171881	36	INTRON	INTRON	SCAP	ENSG00000114650.21	ENST00000265565.10:ENST00000441517.6:ENST00000320017.10:ENST00000648151.1:ENST00000416208.5:ENST00000416847.5:ENST00000448217.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	42	2	4.85872	4.9395	5.02028	0.00303216	0.00221911	0.0493883	0.0435144
chr3	195379611	195379710	1895277	0	-	0.424242	(0.408,0.44]	chr3	189674	215	INTRON	INTRON	ACAP2	ENSG00000114331.16	ENST00000326793.11:ENST00000635383.1:ENST00000480906.5:ENST00000481463.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	42	2	4.85872	4.9395	5.02028	0.00303216	0.00221911	0.0493883	0.0435144
chr10	24622332	24622432	4580921	0	-	0.44	(0.408,0.44]	chr10	422154	2	SS5_PROX	SS5_PROX:INTRON	ARHGAP21	ENSG00000107863.20	ENST00000612832.4:ENST00000396432.7:ENST00000680286.1:ENST00000376410.7:ENST00000636789.1:ENST00000446003.5:ENST00000483114.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	44	2	4.42713	4.93933	5.45153	0.0173083	1.89064e-4	0.104099	0.0119565
chr13	79388805	79388905	5626235	0	-	0.31	(0.28,0.32]	chr13	536667	95	INTRON	INTRON	RBM26	ENSG00000139746.16	ENST00000438737.3:ENST00000438724.5:ENST00000622611.4:ENST00000267229.11:ENST00000472143.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	45	2	4.73474	4.939075000000001	5.14341	0.0162835	0.00185891	0.101453	0.039946
chrX	20256132	20256231	7773304	0	-	0.292929	(0.28,0.32]	chrX	794587	141	INTRON	INTRON	RPS6KA3	ENSG00000177189.14	ENST00000379565.9:ENST00000643085.1:ENST00000645270.1:ENST00000643402.1:ENST00000644368.1:ENST00000647265.1:ENST00000645268.1:ENST00000646610.1:ENST00000643337.1:ENST00000642835.1:ENST00000644893.1:ENST00000438357.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	45	2	4.73474	4.939075000000001	5.14341	0.0162835	0.00185891	0.101453	0.039946
chr4	2551649	2551748	1912666	0	+	0.30303	(0.28,0.32]	chr4	191976	141	INTRON	INTRON	RNF4:FAM193A	ENSG00000063978.16:ENSG00000125386.16	ENST00000508235.1:ENST00000637812.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	45	2	4.83165	4.93872	5.04579	0.00714672	0.00527257	0.0723634	0.0656295
chr22	50259850	50259946	7603991	0	-	0.53125	(0.515,0.57]	chr22	778939	12	INTRON	INTRON	MAPK12	ENSG00000188130.14	ENST00000497036.5:ENST00000215659.13:ENST00000622558.4:ENST00000488504.5:ENST00000395780.5:ENST00000467891.5:ENST00000482969.5:ENST00000492218.1:ENST00000395778.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	43	2	4.399	4.938495	5.47799	0.00708863	2.09356e-4	0.0754923	0.0131276
chr9	130863734	130863834	4215364	0	+	0.42	(0.408,0.44]	chr9	386448	3	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000318560.6	protein_coding	protein_coding	protein_coding	protein_coding	0	44	2	4.53088	4.93818	5.34548	0.00669275	9.40657e-4	0.0738715	0.0280776
chr1	153626119	153626219	556190	0	-	0.51	(0.476,0.515]	chr1	65798	4	SS5_PROX	SS5_PROX:INTRON	S100A13	ENSG00000189171.15	ENST00000440685.7:ENST00000339556.8:ENST00000476133.6:ENST00000392623.5:ENST00000392622.3:ENST00000491177.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	43	2	4.61519	4.93732	5.25945	0.00528365	0.00111445	0.0656295	0.0306328
chr6	158007625	158007725	3017269	0	+	0.49	(0.476,0.515]	chr6	281468	252	INTRON	INTRON	SYNJ2	ENSG00000078269.15	ENST00000355585.9:ENST00000640338.1:ENST00000367113.5	protein_coding	protein_coding	protein_coding	protein_coding	0	43	2	4.61519	4.93732	5.25945	0.00528365	0.00111445	0.0656295	0.0306328
chr1	15836094	15836192	34541	0	+	0.561224	(0.515,0.57]	chr1	4238	1	UTR5	UTR5:EXON_MRNA	SPEN	ENSG00000065526.12	ENST00000673875.1	protein_coding	protein_coding	protein_coding	protein_coding	0	40	2	4.76984	4.93716	5.10448	0.00198034	0.0010345	0.0411469	0.029231300000000002
chr5	134855566	134855665	2491382	0	+	0.414141	(0.408,0.44]	chr5	238030	2	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	C5orf24	ENSG00000181904.9	ENST00000338051.4:ENST00000394976.4:ENST00000504727.1:ENST00000507390.1	protein_coding	protein_coding	protein_coding	protein_coding	1	87	2	3.75755	4.93696	6.11637	2.62433e-4	3.037e-5	0.0143317	0.00456454
chr7	6044361	6044461	3476092	0	-	0.5	(0.476,0.515]	chr7	325205	4	SS5_PROX	SS5_PROX:INTRON	EIF2AK1	ENSG00000086232.13	ENST00000199389.11:ENST00000495565.5:ENST00000474029.5:ENST00000470168.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	42	2	4.6932	4.936795	5.18039	0.00753088	6.58744e-4	0.074841	0.0232396
chrX	71292279	71292374	7678091	0	+	0.526316	(0.515,0.57]	chrX	786085	4	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	NONO	ENSG00000147140.17	ENST00000677446.1:ENST00000677274.1:ENST00000535149.5:ENST00000420903.6:ENST00000678335.1:ENST00000678830.1:ENST00000677826.1:ENST00000473525.2:ENST00000678437.1:ENST00000676499.1:ENST00000676495.1:ENST00000678323.1:ENST00000677766.1:ENST00000679267.1:ENST00000373856.8:ENST00000679254.1:ENST00000677879.1:ENST00000677245.1:ENST00000373841.5:ENST00000276079.13:ENST00000679029.1:ENST00000677218.1:ENST00000676797.1:ENST00000679062.1:ENST00000678660.1:ENST00000677014.1:ENST00000678231.1:ENST00000474431.5:ENST00000677612.1:ENST00000677977.1:ENST00000471419.7:ENST00000472185.1:ENST00000413858.5:ENST00000486613.6:ENST00000450092.6:ENST00000454976.2:ENST00000418921.1:ENST00000490044.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	41	2	4.5963	4.936405000000001	5.27651	0.00370287	5.11033e-4	0.0561162	0.020816
chr22	49822450	49822550	7603173	0	-	0.51	(0.476,0.515]	chr22	778664	1	SS5_PROX	SS5_PROX:INTRON	BRD1	ENSG00000100425.19	ENST00000404760.6:ENST00000404034.5:ENST00000216267.12:ENST00000438393.5:ENST00000457780.3:ENST00000459821.1:ENST00000494833.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	42	2	4.77856	4.936394999999999	5.09423	0.00305743	0.00204588	0.0509893	0.04086
chr8	54069903	54070003	3953558	0	-	0.34	(0.32,0.35]	chr8	362624	37	INTRON	INTRON	LYPLA1	ENSG00000120992.18	ENST00000316963.8:ENST00000618914.4:ENST00000618741.1:ENST00000343231.10:ENST00000519272.5:ENST00000518546.5:ENST00000522007.5:ENST00000519891.5:ENST00000521352.5:ENST00000521898.5:ENST00000519926.5:ENST00000517297.5:ENST00000520896.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	44	2	4.6938	4.93601	5.17822	0.0137794	0.00115625	0.0949306	0.0313436
chr1	207329520	207329619	303347	0	+	0.40404	(0.378,0.408]	chr1	34907	21	INTRON	INTRON	CD55	ENSG00000196352.18	ENST00000695822.1:ENST00000695823.1:ENST00000695826.1:ENST00000695825.1:ENST00000695824.1:ENST00000367063.6:ENST00000695827.1:ENST00000695828.1:ENST00000645323.1:ENST00000391921.9:ENST00000695829.1:ENST00000367064.9:ENST00000314754.12:ENST00000644836.1:ENST00000343420.6:ENST00000476590.1:ENST00000465534.5:ENST00000488171.6:ENST00000618707.2:ENST00000635614.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	95	2	3.90863	4.93578	5.96293	2.19981e-4	1.59815e-5	0.0135522	0.00301858
chr3	180976987	180977087	1569275	0	+	0.27	[0,0.28]	chr3	162461	8	UTR3	UTR3:EXON_MRNA	FXR1	ENSG00000114416.18	ENST00000305586.11:ENST00000357559.9:ENST00000445140.6	protein_coding	protein_coding	protein_coding	protein_coding	0	47	2	4.71017	4.935734999999999	5.1613	0.0114708	0.00866441	0.0956037	0.0787025
chr15	30717629	30717727	5993201	0	+	0.44898	(0.44,0.476]	chr15	569779	9	INTRON	INTRON	ENSG00000284906:ENSG00000285035:ENSG00000187951	ENSG00000284906.3:ENSG00000285035.2:ENSG00000187951.11	ENST00000685924.1:ENST00000566548.5:ENST00000602616.6:ENST00000562954.1	protein_coding	protein_coding	protein_coding:lncRNA:transcribed_unprocessed_pseudogene	protein_coding:lncRNA:processed_transcript	0	43	2	4.61954	4.935665	5.25179	0.00506805	0.00124521	0.0646039	0.0322969
chr6	42880784	42880860	2867663	0	+	0.447368	(0.44,0.476]	chr6	271374	4	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	RPL7L1	ENSG00000146223.16	ENST00000493763.7:ENST00000483998.6:ENST00000397415.7:ENST00000304734.9:ENST00000487619.1:ENST00000492836.1:ENST00000497417.1:ENST00000602561.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	43	2	4.61954	4.935665	5.25179	0.00506805	0.00124521	0.0646039	0.0322969
chr1	174528443	174528543	260816	0	+	0.35	(0.32,0.35]	chr1	30824	790	INTRON	INTRON	RABGAP1L	ENSG00000152061.24	ENST00000357444.10:ENST00000251507.8:ENST00000681986.1:ENST00000367690.5:ENST00000526253.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	44	2	4.79482	4.935555	5.07629	0.00468114	0.00447781	0.0610799	0.0600108
chr22	20617235	20617333	7557691	0	-	0.326531	(0.32,0.35]	chr22	772882	4	INTRON	INTRON	SMPD4P1	ENSG00000223553.6	ENST00000416717.6:ENST00000443839.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	44	2	4.79482	4.935555	5.07629	0.00468114	0.00447781	0.0610799	0.0600108
chr13	95125799	95125899	5638098	0	-	0.46	(0.44,0.476]	chr13	537056	94	INTRON	INTRON	ABCC4	ENSG00000125257.16	ENST00000645237.2:ENST00000643051.1:ENST00000643842.1:ENST00000646439.1:ENST00000644880.1:ENST00000643816.1:ENST00000536256.3:ENST00000643556.1:ENST00000629385.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	42	2	4.68564	4.935225	5.18481	0.00816201	6.21872e-4	0.0766625	0.0223951
chr20	32378344	32378444	7256026	0	+	0.46	(0.44,0.476]	chr20	737076	59	INTRON	INTRON	ASXL1	ENSG00000171456.21	ENST00000651418.1:ENST00000375687.10:ENST00000613218.4:ENST00000644587.1:ENST00000620121.4:ENST00000646985.1:ENST00000643168.1:ENST00000306058.9:ENST00000645688.1:ENST00000470145.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	42	2	4.68564	4.935225	5.18481	0.00816201	6.21872e-4	0.0766625	0.0223951
chr6	170553129	170553142	3267678	0	-	0.461538	(0.44,0.476]	chr6	303387	1	CDS	CDS:EXON_MRNA	PSMB1	ENSG00000008018.9	ENST00000262193.7	protein_coding	protein_coding	protein_coding	protein_coding	0	42	2	4.78293	4.934760000000001	5.08659	0.00292033	0.00226401	0.0494641	0.0425438
chr16	22468246	22468338	6322257	0	+	0.391304	(0.378,0.408]	chr16	605344	6	INTRON	INTRON	SMG1P1	ENSG00000237296.10	ENST00000381231.5:ENST00000309865.11:ENST00000687936.1:ENST00000691423.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	43	2	4.69169	4.93398	5.17627	0.00432302	0.00208234	0.0599409	0.0411801
chr3	5124181	5124280	1353592	0	+	0.272727	[0,0.28]	chr3	142354	12	INTRON	INTRON	ARL8B	ENSG00000134108.14	ENST00000429403.5:ENST00000256496.8:ENST00000455168.5:ENST00000444332.1:ENST00000419534.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	148	2	3.77796	4.933625	6.08929	4.45295e-4	3.25157e-5	0.0194896	0.00454906
chr4	103164552	103164651	2215258	0	-	0.242424	[0,0.28]	chr4	217118	6	INTRON	INTRON	CENPE	ENSG00000138778.14	ENST00000380026.8:ENST00000265148.9	protein_coding	protein_coding	protein_coding	protein_coding	0	49	2	4.38387	4.93347	5.48307	0.0501911	9.62922e-4	0.156383	0.0285195
chr19	48617020	48617118	7199067	0	-	0.520408	(0.515,0.57]	chr19	729801	3	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPL18	ENSG00000063177.13	ENST00000552347.5:ENST00000547897.5:ENST00000551749.5:ENST00000552588.5:ENST00000549920.6:ENST00000550645.5:ENST00000084795.9:ENST00000547892.1:ENST00000546623.5:ENST00000549370.5:ENST00000549273.5:ENST00000550973.5:ENST00000552705.5:ENST00000552851.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:non_stop_decay:nonsense_mediated_decay	0	46	2	4.17037	4.93306	5.69575	0.0139194	7.34886e-5	0.10247	0.00767614
chr3	38371562	38371660	1399732	0	+	0.44898	(0.44,0.476]	chr3	146824	10	INTRON	INTRON	XYLB	ENSG00000093217.11	ENST00000207870.8:ENST00000650590.1:ENST00000424034.5:ENST00000649234.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	156	2	3.12719	4.93304	6.73889	2.88504e-5	8.22801e-7	0.00425445	5.56494e-4
chr1	1484058	1484153	1696	0	+	0.421053	(0.408,0.44]	chr1	397	7	EXON_MRNA	EXON_MRNA:INTRON	ATAD3B	ENSG00000160072.20	ENST00000673477.1:ENST00000308647.8:ENST00000472194.6:ENST00000485748.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	86	2	3.86808	4.932980000000001	5.99788	1.49394e-4	5.47233e-5	0.0106137	0.00651589
chr1	231367989	231368078	655712	0	-	0.438202	(0.408,0.44]	chr1	77791	5	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	EGLN1:ENSG00000287856	ENSG00000135766.9:ENSG00000287856.1	ENST00000667629.1:ENST00000366641.4:ENST00000653908.1:ENST00000653198.1:ENST00000658954.1:ENST00000670301.1:ENST00000662216.1:ENST00000654803.1:ENST00000476717.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	43	2	4.62009	4.93255	5.24501	0.00504155	0.00137378	0.0646039	0.0336718
chr16	48377739	48377838	6483985	0	-	0.424242	(0.408,0.44]	chr16	627085	120	INTRON	INTRON	SIAH1	ENSG00000196470.12	ENST00000568007.5:ENST00000394725.3:ENST00000563745.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	43	2	4.62009	4.93255	5.24501	0.00504155	0.00137378	0.0646039	0.0336718
chr5	37402862	37402962	2340626	0	+	0.43	(0.408,0.44]	chr5	226227	59	INTRON	INTRON	WDR70	ENSG00000082068.9	ENST00000504564.1:ENST00000511906.5:ENST00000265107.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	43	2	4.62009	4.93255	5.24501	0.00504155	0.00137378	0.0646039	0.0336718
chr9	137573707	137573807	4377568	0	-	0.42	(0.408,0.44]	chr9	403638	1	SS5_PROX	SS5_PROX:INTRON	DPH7	ENSG00000148399.13	ENST00000277540.7:ENST00000479650.5:ENST00000475100.5:ENST00000472113.5:ENST00000485189.5:ENST00000467768.5:ENST00000477690.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	43	2	4.62009	4.93255	5.24501	0.00504155	0.00137378	0.0646039	0.0336718
chr10	96569691	96569790	4674257	0	-	0.434343	(0.408,0.44]	chr10	430721	39	INTRON	INTRON	TM9SF3	ENSG00000077147.16	ENST00000371142.9:ENST00000649367.1:ENST00000443638.1:ENST00000464654.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	42	2	4.67894	4.93215	5.18536	0.0087648	6.17381e-4	0.0788605	0.0223951
chr16	68121286	68121386	6370583	0	+	0.38	(0.378,0.408]	chr16	612188	317	INTRON	INTRON	ENSG00000261864:NFATC3	ENSG00000261864.1:ENSG00000072736.19	ENST00000548144.1:ENST00000563319.5:ENST00000569766.5:ENST00000553077.5:ENST00000566301.5:ENST00000549350.5:ENST00000566893.5:ENST00000575270.5:ENST00000561714.5:ENST00000346183.8:ENST00000568466.6:ENST00000539828.6:ENST00000562171.1:ENST00000349223.9:ENST00000329524.8:ENST00000379165.8:ENST00000562926.5:ENST00000570212.5:ENST00000563796.5:ENST00000567152.5:ENST00000563288.5:ENST00000535127.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA:processed_transcript	0	42	2	4.87762	4.931745	4.98587	0.00553849	0.00152268	0.0648867	0.0360297
chr7	75210335	75210427	3557534	0	-	0.413043	(0.408,0.44]	chr7	331367	4	SS5_PROX	SS5_PROX:INTRON	GTF2IP1	ENSG00000277053.4	ENST00000622829.4:ENST00000616377.4:ENST00000614592.4:ENST00000622399.4	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	42	2	4.78348	4.931655	5.07983	0.00290352	0.00247652	0.0494641	0.0446195
chr2	55371456	55371555	1123905	0	-	0.292929	(0.28,0.32]	chr2	120548	71	INTRON	INTRON	CCDC88A	ENSG00000115355.18	ENST00000263630.13:ENST00000436346.7:ENST00000336838.10:ENST00000642200.1:ENST00000413716.7:ENST00000643413.1:ENST00000647401.1:ENST00000645311.1:ENST00000646796.1:ENST00000645571.1:ENST00000645477.1:ENST00000645072.1:ENST00000644890.1:ENST00000644630.1:ENST00000647098.1:ENST00000646324.1:ENST00000642890.1:ENST00000647517.1:ENST00000645031.1:ENST00000645484.1:ENST00000645529.1:ENST00000644033.1:ENST00000644193.1:ENST00000645168.1:ENST00000647341.1:ENST00000430086.1:ENST00000644127.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	45	2	4.66359	4.931005	5.19842	0.0193496	0.00152333	0.108861	0.0360297
chr18	13076171	13076271	6877454	0	+	0.32	(0.28,0.32]	chr18	681498	26	INTRON	INTRON	CEP192	ENSG00000101639.19	ENST00000325971.12:ENST00000506447.5:ENST00000513432.5:ENST00000511820.6:ENST00000510237.5:ENST00000589993.5:ENST00000507254.6:ENST00000540847.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	45	2	4.76031	4.9305	5.10069	0.00656106	0.00610574	0.0735539	0.0676501
chr19	40455721	40455820	7184480	0	-	0.282828	(0.28,0.32]	chr19	726746	39	INTRON	INTRON	BLVRB	ENSG00000090013.11	ENST00000643519.1:ENST00000263368.9:ENST00000595483.5:ENST00000643596.1:ENST00000601346.5:ENST00000597870.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	45	2	4.76031	4.9305	5.10069	0.00656106	0.00610574	0.0735539	0.0676501
chr7	121366265	121366363	3630596	0	-	0.306122	(0.28,0.32]	chr7	337365	17	INTRON	INTRON	FAM3C	ENSG00000196937.11	ENST00000359943.8:ENST00000412653.5:ENST00000426156.1	protein_coding	protein_coding	protein_coding	protein_coding	0	49	2	4.2432	4.930165000000001	5.61713	0.0479043	2.86819e-4	0.153019	0.0150568
chr12	32705863	32705942	5110013	0	+	0.379747	(0.378,0.408]	chr12	482442	1	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	DNM1L	ENSG00000087470.19	ENST00000414834.6:ENST00000452533.6:ENST00000358214.9:ENST00000553257.6:ENST00000549701.6:ENST00000548671.5:ENST00000266481.10:ENST00000551076.5:ENST00000550011.5:ENST00000546649.5:ENST00000547312.5:ENST00000413295.6:ENST00000434676.6:ENST00000547932.5:ENST00000550154.5:ENST00000551476.5:ENST00000551643.5:ENST00000381000.8:ENST00000548750.5:ENST00000549926.5:ENST00000546757.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	42	2	4.91776	4.93013	4.9425	0.00452675	0.00196368	0.0595107	0.0411469
chr7	127923868	127923968	3405136	0	+	0.39	(0.378,0.408]	chr7	318161	187	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000465900.5:ENST00000486037.1:ENST00000484767.5:ENST00000492840.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	42	2	4.91776	4.93013	4.9425	0.00452675	0.00196368	0.0595107	0.0411469
chr16	7964138	7964238	6440149	0	-	0.3	(0.28,0.32]	chr16	620339	694	INTRON	INTRON	ENSG00000260289	ENSG00000260289.2	ENST00000670665.1:ENST00000654046.1:ENST00000567103.2	lncRNA	lncRNA	lncRNA	lncRNA	1	99	2	3.65016	4.930125	6.21009	6.39301e-4	1.11538e-4	0.0228666	0.00945289
chr15	70091235	70091335	6215439	0	-	0.5	(0.476,0.515]	chr15	593115	147	INTRON	INTRON	TLE3	ENSG00000140332.18	ENST00000558939.5:ENST00000451782.7:ENST00000317509.12:ENST00000557919.5:ENST00000560525.6:ENST00000559929.5:ENST00000560589.5:ENST00000561453.5:ENST00000557997.5:ENST00000560939.5:ENST00000559048.5:ENST00000440567.7:ENST00000558201.5:ENST00000654081.1:ENST00000559191.5:ENST00000557907.5:ENST00000558379.5:ENST00000557984.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	92	2	3.40003	4.930095	6.46016	0.00139193	3.61681e-6	0.0341261	0.0013551
chr4	51893338	51893437	1959068	0	+	0.262626	[0,0.28]	chr4	196342	11	INTRON	INTRON	DCUN1D4	ENSG00000109184.15	ENST00000509376.5:ENST00000381441.7:ENST00000334635.10:ENST00000507741.5:ENST00000477560.5:ENST00000451288.6:ENST00000510587.5:ENST00000507659.5:ENST00000505634.5:ENST00000510808.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	46	2	4.82433	4.9300049999999995	5.03568	0.0200334	0.00446141	0.109608	0.0610799
chr7	92572792	92572892	3570741	0	-	0.27	[0,0.28]	chr7	332720	25	INTRON	INTRON	FAM133B	ENSG00000234545.8	ENST00000445716.6:ENST00000438306.5:ENST00000415397.6:ENST00000481407.5:ENST00000427372.5:ENST00000494079.1:ENST00000468931.1:ENST00000490747.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	46	2	4.91414	4.929875	4.94561	0.0150263	0.0064519	0.0994339	0.0730725
chr5	6616226	6616326	2566603	0	-	0.37	(0.35,0.378]	chr5	245926	1	SS5_PROX	SS5_PROX:INTRON	NSUN2	ENSG00000037474.15	ENST00000264670.11:ENST00000504374.5:ENST00000505892.5:ENST00000506139.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	45	2	4.39303	4.928485	5.46394	0.0237246	2.60035e-4	0.118716	0.014326
chr1	148777151	148777250	547201	0	-	0.484848	(0.476,0.515]	chr1	64248	6	INTRON	INTRON	SEC22B3P	ENSG00000275140.1	ENST00000616023.1	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	1	86	2	3.78212	4.9275400000000005	6.07296	2.36145e-4	2.96173e-5	0.0136195	0.00451038
chr12	53596259	53596359	5328714	0	-	0.39	(0.378,0.408]	chr12	508398	433	INTRON	INTRON	ATF7	ENSG00000170653.19	ENST00000548446.6:ENST00000420353.7:ENST00000456903.8:ENST00000588232.5:ENST00000551480.2:ENST00000588078.5:ENST00000591397.1:ENST00000548118.6	protein_coding	protein_coding	protein_coding	protein_coding	1	87	2	4.0017	4.9272849999999995	5.85287	1.39037e-4	7.73853e-5	0.0107072	0.00735438
chr4	23101101	23101200	1929140	0	+	0.232323	[0,0.28]	chr4	193971	52	INTRON	INTRON	ENSG00000248837	ENSG00000248837.7	ENST00000659942.1:ENST00000655325.1:ENST00000652324.1:ENST00000653008.1:ENST00000666412.1:ENST00000667179.1:ENST00000661585.1:ENST00000653872.1:ENST00000667156.1:ENST00000653188.1:ENST00000666579.1:ENST00000663348.1	lncRNA	lncRNA	lncRNA	lncRNA	0	46	2	4.75964	4.9262250000000005	5.09281	0.0232081	0.00372534	0.118148	0.0561984
chr7	32517747	32517847	3303456	0	+	0.27	[0,0.28]	chr7	306758	216	INTRON	INTRON	AVL9	ENSG00000105778.20	ENST00000485228.1:ENST00000318709.9:ENST00000459629.1:ENST00000409301.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	46	2	4.75964	4.9262250000000005	5.09281	0.0232081	0.00372534	0.118148	0.0561984
chr2	61448785	61448885	1130334	0	-	0.34	(0.32,0.35]	chr2	121499	276	INTRON	INTRON	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000453133.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	44	2	4.61889	4.926080000000001	5.23327	0.0166646	9.33826e-4	0.102621	0.0278746
chr13	39028890	39028960	5576116	0	-	0.357143	(0.35,0.378]	chr13	533075	2	SS5_PROX	SS5_PROX:INTRON	PROSER1	ENSG00000120685.20	ENST00000352251.8:ENST00000625998.2:ENST00000436678.1:ENST00000418503.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	43	2	4.64457	4.926	5.20743	0.012652	7.78116e-4	0.0926667	0.0256531
chr16	68170793	68170892	6371085	0	+	0.272727	[0,0.28]	chr16	612221	34	INTRON	INTRON	NFATC3	ENSG00000072736.19	ENST00000563319.5:ENST00000569766.5:ENST00000553077.5:ENST00000566301.5:ENST00000549350.5:ENST00000575270.5:ENST00000346183.8:ENST00000568466.6:ENST00000539828.6:ENST00000349223.9:ENST00000329524.8:ENST00000379165.8:ENST00000562926.5:ENST00000570212.5:ENST00000563796.5:ENST00000567152.5:ENST00000563288.5:ENST00000535127.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	46	2	4.84931	4.9259699999999995	5.00263	0.013055	0.00779241	0.093385	0.0787356
chr21	29040068	29040108	7390126	0	+	0.25	[0,0.28]	chr21	753003	1	INTRON	INTRON	USP16	ENSG00000156256.15	ENST00000399975.7:ENST00000334352.8:ENST00000474835.5:ENST00000399976.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	46	2	4.84931	4.9259699999999995	5.00263	0.013055	0.00779241	0.093385	0.0787356
chr3	138559426	138559526	1829285	0	-	0.51	(0.476,0.515]	chr3	183871	217	INTRON	INTRON	CEP70	ENSG00000114107.9	ENST00000264982.8:ENST00000489254.5:ENST00000484888.5:ENST00000474781.5:ENST00000481834.5:ENST00000468900.5:ENST00000462419.5:ENST00000478673.5:ENST00000464035.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	42	2	4.61402	4.925855	5.23769	0.00947755	5.17244e-4	0.0817766	0.0203753
chr10	37840808	37840908	4602431	0	-	0.4	(0.378,0.408]	chr10	423985	23	INTRON	INTRON	ZNF248	ENSG00000198105.16	ENST00000615949.6:ENST00000485560.5:ENST00000395867.8:ENST00000357328.8:ENST00000611278.4:ENST00000374648.7:ENST00000395873.7:ENST00000395874.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	42	2	4.73839	4.92577	5.11315	0.00837252	9.26795e-4	0.0774402	0.0278442
chr11	70276210	70276309	4820465	0	+	0.40404	(0.378,0.408]	chr11	449381	34	INTRON	INTRON	PPFIA1	ENSG00000131626.19	ENST00000253925.12:ENST00000389547.7:ENST00000532504.5:ENST00000530746.1:ENST00000532024.1:ENST00000648755.1:ENST00000644155.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	42	2	4.73839	4.92577	5.11315	0.00837252	9.26795e-4	0.0774402	0.0278442
chr14	102653303	102653403	5823140	0	+	0.55	(0.515,0.57]	chr14	552490	596	INTRON	INTRON	RCOR1	ENSG00000089902.10	ENST00000262241.7	protein_coding	protein_coding	protein_coding	protein_coding	0	40	2	4.59914	4.925485	5.25183	0.00616166	2.6074e-4	0.0676501	0.014326
chr4	75658567	75658654	2161957	0	-	0.517241	(0.515,0.57]	chr4	213005	3	SS5_PROX	SS5_PROX:INTRON	G3BP2	ENSG00000138757.15	ENST00000676666.1:ENST00000678062.1:ENST00000678100.1:ENST00000678122.1:ENST00000677265.1:ENST00000678971.1:ENST00000679281.1:ENST00000677333.1:ENST00000676470.1:ENST00000677620.1:ENST00000677606.1:ENST00000678798.1:ENST00000677583.1:ENST00000678447.1:ENST00000678875.1:ENST00000678244.1:ENST00000676974.1:ENST00000677003.1:ENST00000677889.1:ENST00000678329.1:ENST00000676584.1:ENST00000678552.1:ENST00000677192.1:ENST00000677727.1:ENST00000678265.1:ENST00000676839.1:ENST00000677876.1:ENST00000678123.1:ENST00000678578.1:ENST00000677171.1:ENST00000395719.7:ENST00000359707.9:ENST00000677060.1:ENST00000679294.1:ENST00000677201.1:ENST00000677952.1:ENST00000677125.1:ENST00000678273.1:ENST00000357854.7:ENST00000677162.1:ENST00000677566.1:ENST00000677970.1:ENST00000503660.5:ENST00000678670.1:ENST00000677733.1:ENST00000676926.1:ENST00000502654.5:ENST00000509100.6:ENST00000515457.6:ENST00000507745.5:ENST00000513927.1:ENST00000511146.5:ENST00000507252.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	40	2	4.59914	4.925485	5.25183	0.00616166	2.6074e-4	0.0676501	0.014326
chr1	149860529	149860626	549566	0	-	0.319588	(0.28,0.32]	chr1	64521	7	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	H4C15	ENSG00000270276.3	ENST00000621520.1:ENST00000612061.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	5	446	2	4.21079	4.925465	5.64014	2.79367e-7	4.36654e-9	2.87652e-4	2.0975e-5
chr17	75359093	75359193	6837332	0	-	0.39	(0.378,0.408]	chr17	675716	259	INTRON	INTRON	GRB2	ENSG00000177885.15	ENST00000316615.9:ENST00000316804.10:ENST00000392562.5:ENST00000392564.5:ENST00000392563.5:ENST00000648046.1:ENST00000578961.5:ENST00000582582.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	42	2	4.84627	4.92543	5.00459	0.00371142	0.00254319	0.0535094	0.0465056
chr7	2226932	2227030	3466887	0	-	0.479592	(0.476,0.515]	chr7	324128	10	INTRON	INTRON	MAD1L1	ENSG00000002822.16	ENST00000406869.5:ENST00000399654.6:ENST00000402746.5:ENST00000265854.12:ENST00000455998.5:ENST00000429779.1	protein_coding	protein_coding	protein_coding	protein_coding	0	42	2	4.69918	4.925305	5.15143	0.00400966	0.00166579	0.057767	0.0369207
chr10	75221563	75221657	4464451	0	+	0.404255	(0.378,0.408]	chr10	411838	2	INTRON	INTRON	VDAC2	ENSG00000165637.14	ENST00000543351.5:ENST00000298468.9:ENST00000472137.5:ENST00000332211.11:ENST00000313132.8:ENST00000498394.5:ENST00000447677.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	94	2	3.85391	4.92512	5.99633	2.84248e-4	1.32573e-5	0.015495	0.00270432
chr2	173960887	173960986	1269027	0	-	0.535354	(0.515,0.57]	chr2	134219	43	INTRON	INTRON	SP3	ENSG00000172845.18	ENST00000310015.12:ENST00000416195.1:ENST00000418194.7:ENST00000652005.2:ENST00000462904.1:ENST00000483084.1:ENST00000490182.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	40	2	4.68568	4.924905	5.16413	0.00270027	8.14815e-4	0.0479115	0.0263656
chr7	121131474	121131571	3395078	0	+	0.309278	(0.28,0.32]	chr7	317753	8	INTRON	INTRON	CPED1	ENSG00000106034.18	ENST00000310396.10:ENST00000428526.5:ENST00000450913.6:ENST00000423795.5:ENST00000443817.1	protein_coding	protein_coding	protein_coding	protein_coding	2	131	2	3.5199	4.9248650000000005	6.32983	8.86821e-5	6.58821e-5	0.00792076	0.0071649
chr15	73568450	73568550	6220523	0	-	0.46	(0.44,0.476]	chr15	593882	48	INTRON	INTRON	NPTN	ENSG00000156642.17	ENST00000351217.10:ENST00000345330.9:ENST00000565325.5:ENST00000562924.5:ENST00000563691.5	protein_coding	protein_coding	protein_coding	protein_coding	0	42	2	4.60647	4.92429	5.24211	0.0102339	4.87398e-4	0.0850389	0.0199652
chr2	202886132	202886231	1315202	0	-	0.454545	(0.44,0.476]	chr2	137954	12	INTRON	INTRON	WDR12	ENSG00000138442.11	ENST00000688520.1:ENST00000261015.5:ENST00000477727.5:ENST00000475611.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	42	2	4.60647	4.92429	5.24211	0.0102339	4.87398e-4	0.0850389	0.0199652
chr8	70597594	70597694	3967092	0	-	0.47	(0.44,0.476]	chr8	363949	3	SS5_PROX	SS5_PROX:INTRON	TRAM1	ENSG00000067167.8	ENST00000262213.7:ENST00000521425.5:ENST00000521049.5:ENST00000520700.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	42	2	4.60647	4.92429	5.24211	0.0102339	4.87398e-4	0.0850389	0.0199652
chr5	180532181	180532280	2562243	0	+	0.323232	(0.32,0.35]	chr5	245090	24	INTRON	INTRON	CNOT6	ENSG00000113300.13	ENST00000261951.9:ENST00000393356.7:ENST00000507016.1:ENST00000618123.4:ENST00000502447.1:ENST00000504343.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	46	2	4.36755	4.924189999999999	5.48083	0.0300552	3.35843e-4	0.129138	0.0162819
chr1	100121725	100121802	515750	0	-	0.324675	(0.32,0.35]	chr1	60483	2	SS3_PROX	SS3_PROX:INTRON	SASS6	ENSG00000156876.10	ENST00000462159.1:ENST00000287482.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	156	2	3.65799	4.924135	6.19028	6.56527e-5	5.18065e-6	0.00715734	0.0015617
chr16	50288450	50288540	6348814	0	+	0.4	(0.378,0.408]	chr16	609399	1	SS5_PROX	SS5_PROX:INTRON	ADCY7	ENSG00000121281.13	ENST00000564965.5:ENST00000564044.5:ENST00000394697.7:ENST00000673801.1:ENST00000566433.6:ENST00000563677.1:ENST00000566761.2:ENST00000673973.1:ENST00000537579.5:ENST00000254235.7:ENST00000567277.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	44	2	4.51854	4.92411	5.32968	0.00748824	0.00119786	0.0772645	0.0315806
chrX	11381474	11381573	7761169	0	-	0.40404	(0.378,0.408]	chrX	793522	457	INTRON	INTRON	ARHGAP6	ENSG00000047648.23	ENST00000380736.5:ENST00000337414.9:ENST00000495242.5:ENST00000489330.6:ENST00000380718.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	44	2	4.51854	4.92411	5.32968	0.00748824	0.00119786	0.0772645	0.0315806
chr1	185054786	185054886	275651	0	+	0.58	(0.57,1]	chr1	32263	81	INTRON	INTRON	RNF2	ENSG00000121481.11	ENST00000367509.8:ENST00000498201.1:ENST00000367510.8:ENST00000453650.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	32	2	4.87333	4.923954999999999	4.97458	3.21412e-4	2.67728e-4	0.0159645	0.0149989
chr7	103310673	103310770	3373250	0	+	0.474227	(0.44,0.476]	chr7	315745	2	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	PMPCB	ENSG00000105819.14	ENST00000249269.9:ENST00000428154.5:ENST00000443722.5:ENST00000444457.5:ENST00000453466.1:ENST00000469560.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	42	2	4.70355	4.923665	5.14378	0.00383786	0.00184943	0.0562562	0.0388609
chr12	68822350	68822444	5163124	0	+	0.191489	[0,0.28]	chr12	488916	11	INTRON	INTRON	MDM2	ENSG00000135679.27	ENST00000258149.11:ENST00000393412.7:ENST00000311420.13:ENST00000393417.8:ENST00000258148.11:ENST00000539479.6:ENST00000523991.5:ENST00000543323.5:ENST00000393415.7:ENST00000393416.7:ENST00000481186.6:ENST00000545204.2:ENST00000544561.6:ENST00000665020.1:ENST00000666617.1:ENST00000671567.1:ENST00000393410.5:ENST00000496959.5:ENST00000299252.8:ENST00000360430.6:ENST00000517852.5:ENST00000546048.5:ENST00000540352.5:ENST00000542502.5:ENST00000537182.5:ENST00000536089.5:ENST00000393413.7:ENST00000350057.9:ENST00000348801.7:ENST00000478070.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	47	2	4.5461	4.9236	5.3011	0.0365918	0.00185843	0.138959	0.039946
chr2	26379223	26379322	715349	0	+	0.323232	(0.32,0.35]	chr2	82601	37	INTRON	INTRON	SELENOI	ENSG00000138018.19	ENST00000260585.12:ENST00000447170.1	protein_coding	protein_coding	protein_coding	protein_coding	0	45	2	4.45629	4.921565	5.38684	0.0246089	5.01164e-4	0.12011	0.020217099999999998
chr6	167017540	167017640	3033552	0	+	0.25	[0,0.28]	chr6	282656	36	INTRON	INTRON	CEP43	ENSG00000213066.13	ENST00000622353.4:ENST00000366847.9:ENST00000349556.4	protein_coding	protein_coding	protein_coding	protein_coding	2	263	2	4.60254	4.921125	5.23971	2.59854e-5	1.73957e-7	0.0042231	1.91532e-4
chr16	14987577	14987677	6305261	0	+	0.41	(0.408,0.44]	chr16	603267	103	INTRON	INTRON	PDXDC1	ENSG00000179889.20	ENST00000563679.5:ENST00000563667.5:ENST00000563522.5:ENST00000535621.6:ENST00000396410.9:ENST00000566426.1:ENST00000455313.6:ENST00000562119.5:ENST00000570001.5:ENST00000569715.5:ENST00000627450.2:ENST00000565362.5:ENST00000567306.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	42	2	4.7041	4.92056	5.13702	0.00381677	0.00202889	0.0562562	0.04086
chr15	99641963	99642063	6114912	0	+	0.36	(0.35,0.378]	chr15	582076	84	INTRON	INTRON	MEF2A	ENSG00000068305.18	ENST00000560493.5:ENST00000354410.9:ENST00000558812.5:ENST00000558856.5:ENST00000685785.1:ENST00000559036.5:ENST00000557785.5:ENST00000558983.5:ENST00000557942.6:ENST00000338042.11:ENST00000558049.5:ENST00000449277.6:ENST00000690055.1:ENST00000691492.1:ENST00000686611.1:ENST00000559903.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	91	2	4.22468	4.92006	5.61544	5.06729e-4	2.51082e-5	0.020816	0.00392664
chr10	21552221	21552321	4404590	0	+	0.25	[0,0.28]	chr10	406432	3	SS5_PROX	SS5_PROX:INTRON	MLLT10	ENSG00000078403.17	ENST00000651097.1:ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000377100.8:ENST00000377091.7:ENST00000650772.1:ENST00000651298.1:ENST00000652497.1:ENST00000495130.5:ENST00000377059.7:ENST00000621220.4:ENST00000476557.5:ENST00000462999.5:ENST00000430455.2:ENST00000479634.1:ENST00000480415.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	46	2	4.69191	4.919840000000001	5.14777	0.0269474	0.00311898	0.123442	0.0512673
chr12	64429362	64429455	5153149	0	+	0.27957	[0,0.28]	chr12	487799	9	INTRON	INTRON	XPOT	ENSG00000184575.12	ENST00000332707.10:ENST00000542958.5:ENST00000538086.5:ENST00000541842.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	46	2	4.69191	4.919840000000001	5.14777	0.0269474	0.00311898	0.123442	0.0512673
chr9	77201807	77201907	4145160	0	+	0.27	[0,0.28]	chr9	377751	4	SS5_PROX	SS5_PROX:INTRON	VPS13A	ENSG00000197969.14	ENST00000376636.7:ENST00000360280.8:ENST00000643348.1:ENST00000645632.1	protein_coding	protein_coding	protein_coding	protein_coding	0	46	2	4.69191	4.919840000000001	5.14777	0.0269474	0.00311898	0.123442	0.0512673
chrX	130408856	130408956	7722669	0	+	0.25	[0,0.28]	chrX	789988	2	SS3_PROX	SS3_PROX:INTRON	RBMX2	ENSG00000134597.17	ENST00000305536.11:ENST00000469953.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	46	2	4.69191	4.919840000000001	5.14777	0.0269474	0.00311898	0.123442	0.0512673
chr4	2726517	2726616	1914446	0	+	0.40404	(0.378,0.408]	chr4	192115	61	INTRON	INTRON	FAM193A	ENSG00000125386.16	ENST00000637812.2:ENST00000324666.9:ENST00000382839.7:ENST00000512465.5:ENST00000502458.5:ENST00000513898.5:ENST00000505311.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	43	2	4.50056	4.919425	5.33829	0.015974	3.59275e-4	0.101453	0.0169207
chr13	50064806	50064906	5594417	0	-	0.5	(0.476,0.515]	chr13	534699	148	INTRON	INTRON	DLEU2	ENSG00000231607.14	ENST00000621282.4:ENST00000688690.1:ENST00000668305.1:ENST00000425586.5:ENST00000686946.1:ENST00000458725.7:ENST00000692504.1:ENST00000443587.6:ENST00000686700.1:ENST00000691340.1:ENST00000433070.7:ENST00000659339.1:ENST00000662092.1:ENST00000666359.2:ENST00000449579.2:ENST00000421758.6:ENST00000690259.1	lncRNA	lncRNA	lncRNA	lncRNA	0	43	2	4.44128	4.919185000000001	5.39709	0.0151924	2.55871e-4	0.0994339	0.0142249
chr9	120817222	120817319	4335487	0	-	0.350515	(0.35,0.378]	chr9	398271	13	UTR3	UTR3:EXON_MRNA:INTRON	PSMD5	ENSG00000095261.14	ENST00000373920.6:ENST00000210313.8	protein_coding	protein_coding	protein_coding	protein_coding	1	90	2	4.14479	4.918340000000001	5.69189	3.71413e-4	3.94692e-5	0.0178698	0.00509511
chr6	157410151	157410251	3011832	0	+	0.48	(0.476,0.515]	chr6	281268	275	INTRON	INTRON	ZDHHC14	ENSG00000175048.17	ENST00000414563.6:ENST00000359775.10	protein_coding	protein_coding	protein_coding	protein_coding	0	43	2	4.526	4.91829	5.31058	0.00699701	9.15544e-4	0.0754576	0.0278396
chr1	172582043	172582142	255197	0	+	0.40404	(0.378,0.408]	chr1	30433	24	INTRON	INTRON	SUCO	ENSG00000094975.14	ENST00000367723.8:ENST00000608151.5:ENST00000616058.4:ENST00000263688.4:ENST00000610051.5	protein_coding	protein_coding	protein_coding	protein_coding	0	42	2	4.66338	4.918095	5.17281	0.0103469	7.27294e-4	0.0850389	0.0245647
chr10	841346	841444	4541671	0	-	0.387755	(0.378,0.408]	chr10	419249	45	INTRON	INTRON	LARP4B	ENSG00000107929.16	ENST00000688365.1:ENST00000316157.8:ENST00000690516.1:ENST00000689323.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	42	2	4.66338	4.918095	5.17281	0.0103469	7.27294e-4	0.0850389	0.0245647
chr8	128049109	128049151	3862635	0	+	0.571429	(0.57,1]	chr8	355559	1	INTRON	INTRON	PVT1	ENSG00000249859.13	ENST00000667305.1:ENST00000690350.1:ENST00000653522.1:ENST00000661830.1:ENST00000657289.1:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000657211.1:ENST00000653845.1:ENST00000651587.1:ENST00000692980.1:ENST00000654324.1:ENST00000657693.1:ENST00000666080.1:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000662410.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000657356.1:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000667714.1:ENST00000654105.1:ENST00000664995.1:ENST00000670714.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000668123.1:ENST00000666776.1:ENST00000659912.1:ENST00000670532.1:ENST00000523068.2:ENST00000671088.1:ENST00000663461.1:ENST00000513868.6:ENST00000692433.1:ENST00000523190.7:ENST00000685606.1:ENST00000690788.1:ENST00000685634.1:ENST00000653990.1:ENST00000655783.1:ENST00000656411.1:ENST00000664742.1:ENST00000655099.1:ENST00000662709.1:ENST00000512617.7:ENST00000660122.1:ENST00000666452.1:ENST00000659666.1:ENST00000659892.1:ENST00000521600.5:ENST00000522875.5:ENST00000653497.1:ENST00000668098.1:ENST00000659106.1:ENST00000666147.1:ENST00000658350.1:ENST00000656999.1:ENST00000664610.1:ENST00000671092.1:ENST00000653853.1:ENST00000652492.1:ENST00000658429.1:ENST00000660781.1:ENST00000660912.1:ENST00000650930.1:ENST00000663715.1:ENST00000652883.1:ENST00000657844.1:ENST00000660659.1:ENST00000661391.1:ENST00000660146.1:ENST00000671587.1:ENST00000658018.1:ENST00000666878.1:ENST00000652993.1:ENST00000658305.1:ENST00000656077.1:ENST00000666039.1:ENST00000668619.1:ENST00000668479.1:ENST00000660069.1	lncRNA	lncRNA	lncRNA	lncRNA	0	33	2	4.56365	4.91716	5.27067	0.00129848	5.68536e-5	0.0333764	0.00655354
chr17	82924231	82924331	6695977	0	+	0.39	(0.378,0.408]	chr17	655052	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	TBCD	ENSG00000141556.22	ENST00000682479.1:ENST00000682722.1:ENST00000684464.1:ENST00000684544.1:ENST00000681983.1:ENST00000684361.1:ENST00000683184.1:ENST00000683282.1:ENST00000684408.1:ENST00000355528.9:ENST00000683444.1:ENST00000684776.1:ENST00000683041.1:ENST00000684760.1:ENST00000684349.1:ENST00000682213.1:ENST00000539345.6:ENST00000684000.1:ENST00000684188.1:ENST00000684429.1:ENST00000682610.1:ENST00000683821.1:ENST00000682654.1:ENST00000683584.1:ENST00000682099.1:ENST00000684559.1:ENST00000576760.5:ENST00000683839.1:ENST00000574975.5:ENST00000571796.5:ENST00000682315.1:ENST00000574422.1:ENST00000576677.6:ENST00000571618.5:ENST00000574886.2:ENST00000574818.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	115	2	3.54736	4.91711	6.28686	4.84094e-5	1.69472e-5	0.00567485	0.00330681
chr19	1227964	1228058	6994431	0	+	0.553191	(0.515,0.57]	chr19	692939	5	UTR3	UTR3:EXON_MRNA	STK11	ENSG00000118046.17	ENST00000326873.12:ENST00000589152.5:ENST00000585465.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	39	2	4.83764	4.916995	4.99635	0.00279527	8.06602e-4	0.0469265	0.0258804
chr19	10974863	10974963	7015696	0	+	0.53	(0.515,0.57]	chr19	697168	92	INTRON	INTRON	SMARCA4	ENSG00000127616.20	ENST00000644737.1:ENST00000642726.1:ENST00000646484.1:ENST00000643549.1:ENST00000643296.1:ENST00000647230.1:ENST00000642628.1:ENST00000646510.1:ENST00000429416.8:ENST00000644760.1:ENST00000344626.10:ENST00000646693.2:ENST00000645460.1:ENST00000541122.6:ENST00000589677.5:ENST00000444061.8:ENST00000590574.6	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	4.83764	4.916995	4.99635	0.00279527	8.06602e-4	0.0469265	0.0258804
chr17	77320448	77320548	6679834	0	+	0.4	(0.378,0.408]	chr17	652487	1	SS5_PROX	SS5_PROX:INTRON	SEPTIN9	ENSG00000184640.20	ENST00000589070.1:ENST00000591833.5:ENST00000591198.5:ENST00000427177.6:ENST00000590576.5:ENST00000431235.6:ENST00000449803.6:ENST00000587237.1:ENST00000329047.13:ENST00000588575.1:ENST00000590595.1:ENST00000590294.6:ENST00000591934.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	91	2	3.47377	4.91685	6.35993	0.00103087	1.15614e-5	0.0294094	0.00268546
chr15	78543689	78543753	6068503	0	+	0.46875	(0.44,0.476]	chr15	578093	1	SS3_PROX	SS3_PROX:INTRON	PSMA4	ENSG00000041357.16	ENST00000560217.5:ENST00000559082.5:ENST00000413382.6:ENST00000559948.5:ENST00000559146.5:ENST00000044462.12:ENST00000559934.5:ENST00000558639.5:ENST00000560099.5:ENST00000557929.5:ENST00000558281.5:ENST00000559365.5:ENST00000558341.5:ENST00000559437.5:ENST00000560737.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	43	2	4.53034	4.91662	5.3029	0.00672609	0.00102616	0.0738715	0.029231300000000002
chr1	40204111	40204211	80396	0	+	0.49	(0.476,0.515]	chr1	10431	11	INTRON	INTRON	RLF	ENSG00000117000.9	ENST00000372771.5	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	4.83962	4.91652	4.99342	0.00480934	0.00139274	0.0602209	0.0341261
chr2	31986392	31986492	1090875	0	-	0.49	(0.476,0.515]	chr2	116913	232	INTRON	INTRON	MEMO1:DPY30	ENSG00000162959.14:ENSG00000162961.14	ENST00000295065.9:ENST00000446765.5:ENST00000404530.6:ENST00000490459.5:ENST00000426310.6:ENST00000413686.1:ENST00000407893.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	41	2	4.90761	4.91645	4.92529	0.00386428	0.00180221	0.0542786	0.0392772
chr6	35413595	35413694	2852691	0	+	0.494949	(0.476,0.515]	chr6	269505	20	INTRON	INTRON	PPARD	ENSG00000112033.14	ENST00000418635.6:ENST00000448077.6:ENST00000360694.8:ENST00000311565.4:ENST00000337400.6	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	4.90761	4.91645	4.92529	0.00386428	0.00180221	0.0542786	0.0392772
chr16	87732640	87732740	6538336	0	-	0.35	(0.32,0.35]	chr16	633530	16	INTRON	INTRON	KLHDC4	ENSG00000104731.14	ENST00000567298.5:ENST00000270583.10:ENST00000347925.9:ENST00000353170.9:ENST00000316853.10:ENST00000566349.5:ENST00000562155.5:ENST00000622456.4:ENST00000562261.1:ENST00000566661.5:ENST00000567513.1:ENST00000564484.5:ENST00000565328.5:ENST00000569747.5:ENST00000564396.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	43	2	4.83287	4.9160450000000004	4.99922	0.0095071	0.00223907	0.0817766	0.0435144
chr1	193172190	193172290	285123	0	+	0.32	(0.28,0.32]	chr1	32819	106	INTRON	INTRON	CDC73	ENSG00000134371.14	ENST00000649895.1:ENST00000643006.1:ENST00000367435.5:ENST00000650197.1:ENST00000648071.1:ENST00000635846.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	44	2	4.86731	4.915925	4.96454	0.0116253	0.00344078	0.0889104	0.0539802
chr1	205089612	205089711	622095	0	-	0.313131	(0.28,0.32]	chr1	73958	4	INTRON	INTRON	RBBP5	ENSG00000117222.14	ENST00000367164.1:ENST00000264515.11	protein_coding	protein_coding	protein_coding	protein_coding	0	44	2	4.86731	4.915925	4.96454	0.0116253	0.00344078	0.0889104	0.0539802
chr16	2259145	2259243	6431602	0	-	0.316327	(0.28,0.32]	chr16	618787	5	INTRON	INTRON	RNPS1	ENSG00000205937.12	ENST00000397086.6:ENST00000566458.5:ENST00000320225.10:ENST00000566397.5:ENST00000565678.5:ENST00000561718.5:ENST00000568631.5:ENST00000569598.6:ENST00000301730.12:ENST00000567147.5:ENST00000565870.5:ENST00000561518.5:ENST00000564311.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	44	2	4.86731	4.915925	4.96454	0.0116253	0.00344078	0.0889104	0.0539802
chr21	9100816	9100916	7426347	0	-	0.29	(0.28,0.32]	chr21	757579	125	INTRON	INTRON	TEKT4P2	ENSG00000188681.12	ENST00000690061.1:ENST00000689141.1:ENST00000688310.1:ENST00000687537.1:ENST00000690096.1:ENST00000687888.1:ENST00000690389.1:ENST00000684989.1:ENST00000416067.6:ENST00000693307.1:ENST00000692383.1:ENST00000685666.1:ENST00000688451.1:ENST00000691190.1:ENST00000685532.1:ENST00000687488.1:ENST00000690713.1:ENST00000691834.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	44	2	4.86731	4.915925	4.96454	0.0116253	0.00344078	0.0889104	0.0539802
chr3	38384929	38385029	1399874	0	+	0.29	(0.28,0.32]	chr3	146865	52	INTRON	INTRON	XYLB	ENSG00000093217.11	ENST00000207870.8:ENST00000650590.1:ENST00000424034.5:ENST00000649234.1:ENST00000472721.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	44	2	4.86731	4.915925	4.96454	0.0116253	0.00344078	0.0889104	0.0539802
chr7	105303052	105303152	3603046	0	-	0.42	(0.408,0.44]	chr7	336154	44	INTRON	INTRON	SRPK2	ENSG00000135250.17	ENST00000393651.8:ENST00000482897.5:ENST00000460391.5:ENST00000462282.5:ENST00000465112.5:ENST00000482862.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	91	2	3.69572	4.915585	6.13545	5.37849e-4	4.91945e-6	0.0214775	0.00150985
chr7	75518915	75519015	3559059	0	-	0.36	(0.35,0.378]	chr7	331602	23	INTRON	INTRON	PMS2P3	ENSG00000127957.19	ENST00000693762.1:ENST00000394921.8:ENST00000430602.5:ENST00000418756.5:ENST00000437568.6:ENST00000533167.5:ENST00000691440.1:ENST00000422064.1:ENST00000438326.2	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript	1	89	2	4.0309	4.915185	5.79947	2.36402e-4	7.36864e-5	0.0140941	0.00714826
chr1	247077293	247077393	683298	0	-	0.45	(0.44,0.476]	chr1	80116	374	INTRON	INTRON	ZNF670-ZNF695:ZNF670	ENSG00000135747.11:ENSG00000277462.2	ENST00000465049.6:ENST00000474541.1:ENST00000366503.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	41	2	4.9	4.91484	4.92968	0.00423315	0.00171443	0.0572185	0.0381936
chrX	2391753	2391853	7744521	0	-	0.47	(0.44,0.476]	chrX	792947	534	INTRON	INTRON	DHRSX	ENSG00000169084.15	ENST00000334651.11:ENST00000412516.7:ENST00000444280.6:ENST00000441131.7:ENST00000478825.7:ENST00000430536.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	41	2	4.9	4.91484	4.92968	0.00423315	0.00171443	0.0572185	0.0381936
chr18	10550904	10551002	6874084	0	+	0.316327	(0.28,0.32]	chr18	680975	8	UTR3	UTR3:EXON_MRNA	NAPG	ENSG00000134265.13	ENST00000322897.11:ENST00000583367.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	44	2	4.80255	4.914605	5.02666	0.0137406	0.0027935	0.0949306	0.0488769
chr3	154290613	154290709	1843184	0	-	0.302083	(0.28,0.32]	chr3	185394	4	INTRON	INTRON	DHX36	ENSG00000174953.14	ENST00000496811.6:ENST00000308361.10:ENST00000329463.9:ENST00000481941.5:ENST00000469977.1:ENST00000481332.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	44	2	4.80255	4.914605	5.02666	0.0137406	0.0027935	0.0949306	0.0488769
chr1	161881761	161881861	237021	0	+	0.29	(0.28,0.32]	chr1	28615	103	INTRON	INTRON	ATF6	ENSG00000118217.7	ENST00000680688.1:ENST00000679853.1:ENST00000681738.1:ENST00000681801.1:ENST00000681779.1:ENST00000367942.4:ENST00000681001.1:ENST00000679886.1:ENST00000681169.1:ENST00000681492.1:ENST00000680481.1:ENST00000680180.1:ENST00000681187.1:ENST00000681557.1:ENST00000681912.1:ENST00000681541.1:ENST00000681036.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	44	2	4.89962	4.914455	4.92929	0.0098607	0.00425206	0.0838128	0.0595557
chr12	50422382	50422482	5136551	0	+	0.31	(0.28,0.32]	chr12	484374	11	INTRON	INTRON	LARP4	ENSG00000161813.23	ENST00000550522.5:ENST00000293618.12:ENST00000429001.7:ENST00000398473.7:ENST00000548174.5:ENST00000548697.5:ENST00000548993.5:ENST00000522085.5:ENST00000518444.5:ENST00000551886.5:ENST00000523389.5:ENST00000518561.5:ENST00000347328.9:ENST00000550260.1:ENST00000517559.5:ENST00000552445.1	protein_coding	protein_coding	protein_coding	protein_coding	0	44	2	4.89962	4.914455	4.92929	0.0098607	0.00425206	0.0838128	0.0595557
chr13	95208325	95208425	5638939	0	-	0.45	(0.44,0.476]	chr13	537138	4	SS3_PROX	SS3_PROX:INTRON	ABCC4	ENSG00000125257.16	ENST00000645237.2:ENST00000643051.1:ENST00000643842.1:ENST00000646439.1:ENST00000643816.1:ENST00000536256.3:ENST00000643556.1:ENST00000629385.1:ENST00000642524.1:ENST00000645532.1:ENST00000644471.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	146	2	2.95304	4.91439	6.87574	3.68938e-4	3.59025e-8	0.0178272	7.53432e-5
chr7	136196694	136196794	3432221	0	+	0.31	(0.28,0.32]	chr7	319917	189	INTRON	INTRON	ENSG00000232053	ENSG00000232053.7	ENST00000657456.1:ENST00000668062.1:ENST00000668668.1:ENST00000445293.6:ENST00000659747.1:ENST00000668896.1:ENST00000435996.1	lncRNA	lncRNA	lncRNA	lncRNA	0	47	2	4.33765	4.914125	5.4906	0.039714	4.89126e-4	0.143072	0.0199693
chr11	74977242	74977341	4830391	0	+	0.353535	(0.35,0.378]	chr11	450695	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	SPCS2	ENSG00000118363.13	ENST00000526361.1:ENST00000263672.11:ENST00000528265.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	43	2	4.5655	4.9140049999999995	5.26251	0.0155464	6.20882e-4	0.100909	0.0223951
chr15	55882083	55882183	6182490	0	-	0.37	(0.35,0.378]	chr15	589399	77	INTRON	INTRON	NEDD4	ENSG00000069869.17	ENST00000435532.8:ENST00000338963.6:ENST00000508342.5:ENST00000503468.5:ENST00000508871.5:ENST00000648451.1:ENST00000506154.1:ENST00000502612.5:ENST00000514893.5:ENST00000507063.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	43	2	4.5655	4.9140049999999995	5.26251	0.0155464	6.20882e-4	0.100909	0.0223951
chr17	37266379	37266478	6761625	0	-	0.373737	(0.35,0.378]	chr17	664888	21	INTRON	INTRON	ACACA	ENSG00000278540.5	ENST00000616317.5:ENST00000614428.4:ENST00000612895.4:ENST00000617649.4:ENST00000613146.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	43	2	4.5655	4.9140049999999995	5.26251	0.0155464	6.20882e-4	0.100909	0.0223951
chr16	30250230	30250329	6472611	0	-	0.353535	(0.35,0.378]	chr16	625566	40	INTRON	INTRON	NPIPB13	ENSG00000198064.14	ENST00000568053.5	protein_coding	protein_coding	protein_coding	protein_coding	2	119	2	3.35098	4.9137249999999995	6.47647	1.59604e-4	9.324e-6	0.0108718	0.00235825
chr17	32867620	32867719	6757021	0	-	0.525253	(0.515,0.57]	chr17	664079	47	INTRON	INTRON	MYO1D	ENSG00000176658.17	ENST00000318217.10:ENST00000579584.5:ENST00000583621.1	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	4.76244	4.913515	5.06459	0.00362147	6.03964e-4	0.0533855	0.0223465
chr6	125204477	125204577	2953653	0	+	0.52	(0.515,0.57]	chr6	277765	3	INTRON	INTRON	TPD52L1	ENSG00000111907.21	ENST00000534368.5:ENST00000304877.17:ENST00000368402.9:ENST00000368388.6:ENST00000534000.6:ENST00000527711.5:ENST00000392483.6:ENST00000528193.5:ENST00000532429.5:ENST00000532978.5:ENST00000534199.5:ENST00000392482.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	39	2	4.76244	4.913515	5.06459	0.00362147	6.03964e-4	0.0533855	0.0223465
chr7	74192066	74192156	3332408	0	+	0.544444	(0.515,0.57]	chr7	310057	4	INTRON	INTRON	EIF4H	ENSG00000106682.16	ENST00000678438.1:ENST00000677998.1:ENST00000495187.2:ENST00000265753.13:ENST00000353999.6:ENST00000677570.1:ENST00000677681.1:ENST00000678815.1:ENST00000679266.1:ENST00000679287.1:ENST00000678341.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	39	2	4.76244	4.913515	5.06459	0.00362147	6.03964e-4	0.0533855	0.0223465
chr2	9585745	9585845	1064525	0	-	0.5	(0.476,0.515]	chr2	113579	4	SS3_PROX	SS3_PROX:INTRON	YWHAQ	ENSG00000134308.14	ENST00000238081.8:ENST00000381844.8:ENST00000474715.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	41	2	4.76827	4.9133700000000005	5.05847	0.00600704	0.00108081	0.0674604	0.0300133
chr6	116650182	116650281	3197768	0	-	0.515152	(0.476,0.515]	chr6	297846	22	INTRON	INTRON	ZUP1	ENSG00000153975.10	ENST00000368576.8	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	4.76827	4.9133700000000005	5.05847	0.00600704	0.00108081	0.0674604	0.0300133
chr1	2250367	2250467	2387	0	+	0.57	(0.515,0.57]	chr1	557	19	INTRON	INTRON	SKI	ENSG00000157933.10	ENST00000378536.5:ENST00000508416.1:ENST00000478223.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	39	2	4.84936	4.91329	4.97722	0.00168681	0.00146032	0.0370386	0.0349875
chr6	89832837	89832937	2916473	0	+	0.55	(0.515,0.57]	chr6	275600	11	INTRON	INTRON	CASP8AP2	ENSG00000118412.13	ENST00000552401.5:ENST00000419040.6:ENST00000547893.5:ENST00000237177.10:ENST00000551025.4:ENST00000548224.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	39	2	4.84936	4.91329	4.97722	0.00168681	0.00146032	0.0370386	0.0349875
chr15	49318871	49318971	6020619	0	+	0.35	(0.32,0.35]	chr15	573767	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	GALK2	ENSG00000156958.15	ENST00000327171.7:ENST00000396509.6:ENST00000560031.6:ENST00000560119.5:ENST00000544523.5:ENST00000559454.5:ENST00000561014.1:ENST00000558399.5:ENST00000559580.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	43	2	4.76501	4.9132	5.06139	0.0114287	0.00179023	0.0886611	0.0392749
chr2	28935120	28935220	725596	0	+	0.35	(0.32,0.35]	chr2	83855	2	SS3_PROX	SS3_PROX:INTRON	WDR43	ENSG00000163811.12	ENST00000407426.8:ENST00000466067.1:ENST00000446643.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	43	2	4.76501	4.9132	5.06139	0.0114287	0.00179023	0.0886611	0.0392749
chr12	100084175	100084275	5396222	0	-	0.51	(0.476,0.515]	chr12	514569	3	SS5_PROX	SS5_PROX:INTRON	UHRF1BP1L	ENSG00000111647.13	ENST00000279907.12:ENST00000545232.6:ENST00000356828.7:ENST00000548045.5:ENST00000551973.5:ENST00000550544.5	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	4.85379	4.9131599999999995	4.97253	0.00311573	0.00234214	0.0498063	0.0442989
chr16	47682772	47682872	6345550	0	+	0.48	(0.476,0.515]	chr16	609026	65	INTRON	INTRON	PHKB	ENSG00000102893.17	ENST00000566044.5:ENST00000299167.12:ENST00000696809.1:ENST00000323584.10:ENST00000566319.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	41	2	4.85379	4.9131599999999995	4.97253	0.00311573	0.00234214	0.0498063	0.0442989
chr19	47371532	47371632	7085616	0	+	0.48	(0.476,0.515]	chr19	708993	40	INTRON	INTRON	DHX34	ENSG00000134815.19	ENST00000328771.9:ENST00000471451.1:ENST00000486327.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	41	2	4.85379	4.9131599999999995	4.97253	0.00311573	0.00234214	0.0498063	0.0442989
chr6	167964010	167964105	3035749	0	+	0.494737	(0.476,0.515]	chr6	282889	16	UTR3	UTR3:EXON_MRNA:INTRON	AFDN	ENSG00000130396.21	ENST00000683244.1:ENST00000351017.9:ENST00000392112.5:ENST00000392108.7:ENST00000400822.7:ENST00000447894.6:ENST00000366806.6:ENST00000511637.5:ENST00000485634.7:ENST00000507704.5:ENST00000515794.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	41	2	4.85379	4.9131599999999995	4.97253	0.00311573	0.00234214	0.0498063	0.0442989
chr5	66159434	66159534	2372645	0	+	0.3	(0.28,0.32]	chr5	228667	1	SS5_PROX	SS5_PROX:INTRON	SREK1	ENSG00000153914.16	ENST00000521691.5:ENST00000334121.11:ENST00000520953.5:ENST00000522912.5:ENST00000524111.5:ENST00000380918.7:ENST00000284041.7:ENST00000518110.1:ENST00000520580.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	106	2	3.49198	4.91305	6.33412	0.00195595	8.58582e-6	0.0400756	0.00210871
chr11	66783972	66784072	4811740	0	+	0.33	(0.32,0.35]	chr11	447956	212	INTRON	INTRON	C11orf80	ENSG00000173715.18	ENST00000524551.5:ENST00000525908.6:ENST00000540737.7:ENST00000527634.5:ENST00000527368.5:ENST00000531400.6:ENST00000642265.1:ENST00000532565.6:ENST00000525449.6:ENST00000360962.10:ENST00000532727.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	43	2	4.86622	4.912965	4.95971	0.00663522	0.00354075	0.0703181	0.0546236
chr10	68052835	68052934	4637721	0	-	0.292929	(0.28,0.32]	chr10	426436	79	INTRON	INTRON	HERC4	ENSG00000148634.16	ENST00000373700.9:ENST00000412272.6:ENST00000395198.7:ENST00000473533.6:ENST00000427635.6:ENST00000513996.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	46	2	4.4263	4.91296	5.39962	0.0330296	7.06751e-4	0.133816	0.0241881
chr1	162523048	162523148	238251	0	+	0.32	(0.28,0.32]	chr1	28688	6	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	UHMK1	ENSG00000152332.16	ENST00000545294.5:ENST00000538489.5:ENST00000489294.2:ENST00000282169.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	179	2	2.85561	4.912335	6.96906	2.33841e-4	2.95203e-6	0.0135358	0.00120829
chr9	37588312	37588412	4251752	0	-	0.33	(0.32,0.35]	chr9	391573	1	SS5_PROX	SS5_PROX:INTRON	TOMM5	ENSG00000175768.13	ENST00000540941.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	0	44	2	4.64046	4.912305	5.18415	0.00724767	0.00333629	0.0756327	0.0512081
chr1	226296928	226297025	647733	0	-	0.505155	(0.476,0.515]	chr1	76739	6	INTRON	INTRON	LIN9	ENSG00000183814.16	ENST00000460719.5:ENST00000366808.6:ENST00000328205.9:ENST00000681046.1:ENST00000481685.1:ENST00000359525.2	protein_coding	protein_coding	protein_coding	protein_coding	1	90	2	3.92306	4.912205	5.90135	1.72405e-4	2.02515e-5	0.0120625	0.00348937
chr10	67887933	67888033	4440433	0	+	0.3	(0.28,0.32]	chr10	409427	4	SS5_PROX	SS5_PROX:INTRON	SIRT1	ENSG00000096717.12	ENST00000212015.11:ENST00000432464.5:ENST00000497639.5:ENST00000473922.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	46	2	4.52233	4.91193	5.30153	0.0129279	0.00332518	0.0990564	0.0512081
chr1	35086929	35087029	67982	0	+	0.44	(0.408,0.44]	chr1	8657	71	INTRON	INTRON	ZMYM1	ENSG00000197056.11	ENST00000650449.1:ENST00000611874.4:ENST00000417119.5:ENST00000466390.5:ENST00000359858.9:ENST00000488455.5:ENST00000373330.1:ENST00000373329.5:ENST00000475654.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	41	2	4.8253	4.911835	4.99837	0.0056738	0.00131369	0.0653997	0.0333932
chr22	22552128	22552218	7562393	0	-	0.2	[0,0.28]	chr22	773608	7	INTRON	INTRON	PRAME	ENSG00000185686.18	ENST00000492657.5:ENST00000398743.6:ENST00000405655.8:ENST00000543184.5:ENST00000398741.5:ENST00000402697.5:ENST00000439106.5:ENST00000438888.5:ENST00000420709.5:ENST00000476336.5:ENST00000485532.1:ENST00000406503.1:ENST00000442481.5:ENST00000403441.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	195	2	2.73175	4.911804999999999	7.09186	5.82315e-4	6.12602e-6	0.0219289	0.00185846
chr10	21620590	21620689	4405285	0	+	0.232323	[0,0.28]	chr10	406483	30	INTRON	INTRON	MLLT10	ENSG00000078403.17	ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000651298.1:ENST00000377059.7:ENST00000652258.1:ENST00000651382.1:ENST00000438473.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	48	2	4.38387	4.9117750000000004	5.43968	0.0501911	0.00113119	0.156383	0.0308465
chr7	129026256	129026356	3636294	0	-	0.43	(0.408,0.44]	chr7	338142	77	INTRON	INTRON	TNPO3	ENSG00000064419.14	ENST00000627585.2:ENST00000265388.10:ENST00000471234.5:ENST00000482320.5:ENST00000471166.1	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	4.89327	4.911755	4.93024	0.00458906	0.00170369	0.0595107	0.0381936
chr7	105150345	105150444	3601505	0	-	0.484848	(0.476,0.515]	chr7	336102	33	INTRON	INTRON	SRPK2	ENSG00000135250.17	ENST00000393651.8:ENST00000357311.7:ENST00000485455.1:ENST00000489828.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	42	2	4.53023	4.91152	5.29281	0.0119748	4.07635e-4	0.0899583	0.0181306
chr1	246048056	246048156	676111	0	-	0.3	(0.28,0.32]	chr1	79713	596	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000391836.3:ENST00000464398.1:ENST00000453676.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	97	2	3.71616	4.911375	6.10659	4.76221e-4	1.73268e-4	0.0197443	0.0120833
chr1	8815470	8815569	373766	0	-	0.383838	(0.378,0.408]	chr1	43563	86	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000656437.1:ENST00000659924.1	protein_coding	protein_coding	protein_coding	protein_coding	1	86	2	3.96977	4.91132	5.85287	1.39037e-4	9.19167e-5	0.0107072	0.00801007
chr1	9561392	9561492	17352	0	+	0.36	(0.35,0.378]	chr1	1576	72	INTRON	INTRON	SLC25A33	ENSG00000171612.7	ENST00000302692.7	protein_coding	protein_coding	protein_coding	protein_coding	0	42	2	4.8587	4.911	4.9633	0.00695662	0.00198929	0.0718189	0.0411469
chr12	64419287	64419381	5153034	0	+	0.351064	(0.35,0.378]	chr12	487750	2	SS5_PROX	SS5_PROX:INTRON	XPOT	ENSG00000184575.12	ENST00000332707.10:ENST00000400935.2	protein_coding	protein_coding	protein_coding	protein_coding	0	42	2	4.8587	4.911	4.9633	0.00695662	0.00198929	0.0718189	0.0411469
chr12	94365397	94365497	5389150	0	-	0.36	(0.35,0.378]	chr12	513815	294	INTRON	INTRON	CEP83	ENSG00000173588.16	ENST00000397809.10:ENST00000339839.9:ENST00000547232.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	42	2	4.8587	4.911	4.9633	0.00695662	0.00198929	0.0718189	0.0411469
chr15	57018374	57018474	6033110	0	+	0.36	(0.35,0.378]	chr15	574669	166	INTRON	INTRON	TCF12	ENSG00000140262.18	ENST00000438423.6:ENST00000267811.9:ENST00000333725.10:ENST00000560190.5:ENST00000559609.5:ENST00000558908.5:ENST00000557843.5:ENST00000557947.5:ENST00000561152.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	42	2	4.8587	4.911	4.9633	0.00695662	0.00198929	0.0718189	0.0411469
chr16	28956935	28957034	6334865	0	+	0.363636	(0.35,0.378]	chr16	606675	2	INTRON	INTRON	NFATC2IP	ENSG00000176953.13	ENST00000564978.5:ENST00000320805.9:ENST00000562977.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	42	2	4.8587	4.911	4.9633	0.00695662	0.00198929	0.0718189	0.0411469
chr4	48387966	48388064	1957497	0	+	0.367347	(0.35,0.378]	chr4	196157	1	INTRON	INTRON	SLAIN2	ENSG00000109171.15	ENST00000264313.11:ENST00000512093.5:ENST00000505131.1:ENST00000510595.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	42	2	4.8587	4.911	4.9633	0.00695662	0.00198929	0.0718189	0.0411469
chr2	186497028	186497127	942922	0	+	0.323232	(0.32,0.35]	chr2	103246	13	INTRON	INTRON	ZC3H15	ENSG00000065548.18	ENST00000421536.5:ENST00000337859.11:ENST00000437396.1:ENST00000481101.5:ENST00000468120.5:ENST00000496289.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	92	2	3.91666	4.910905	5.90515	2.30541e-4	1.54585e-4	0.013917	0.0106835
chr11	14676844	14676944	4743947	0	+	0.27	[0,0.28]	chr11	439279	314	INTRON	INTRON	PDE3B	ENSG00000152270.9	ENST00000282096.9:ENST00000455098.2:ENST00000534317.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	46	2	4.62084	4.910775	5.20071	0.0313633	0.00261806	0.13151	0.0470772
chr3	136874111	136874210	1512556	0	+	0.262626	[0,0.28]	chr3	158193	62	INTRON	INTRON	NCK1	ENSG00000158092.7	ENST00000481752.6:ENST00000288986.6:ENST00000491539.5:ENST00000485096.5:ENST00000476286.1:ENST00000478862.1:ENST00000460960.1:ENST00000488930.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	46	2	4.62084	4.910775	5.20071	0.0313633	0.00261806	0.13151	0.0470772
chr7	105535071	105535171	3375712	0	+	0.27	[0,0.28]	chr7	316041	1	SS3_PROX	SS3_PROX:INTRON	RINT1	ENSG00000135249.8	ENST00000467392.5:ENST00000482041.5:ENST00000493041.5:ENST00000257700.7:ENST00000497979.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	46	2	4.62084	4.910775	5.20071	0.0313633	0.00261806	0.13151	0.0470772
chr10	32054047	32054147	4590806	0	-	0.29	(0.28,0.32]	chr10	423310	51	INTRON	INTRON	KIF5B	ENSG00000170759.11	ENST00000302418.5	protein_coding	protein_coding	protein_coding	protein_coding	0	44	2	4.73474	4.91048	5.08622	0.0162835	0.00227525	0.101453	0.0437013
chr16	3684905	3685003	6434142	0	-	0.285714	(0.28,0.32]	chr16	619345	48	INTRON	INTRON	TRAP1	ENSG00000126602.11	ENST00000246957.10:ENST00000538171.5:ENST00000576335.5:ENST00000571804.5:ENST00000574941.5:ENST00000576106.5:ENST00000571538.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	44	2	4.73474	4.91048	5.08622	0.0162835	0.00227525	0.101453	0.0437013
chr2	95866342	95866441	1178425	0	-	0.282828	(0.28,0.32]	chr2	125761	59	INTRON	INTRON	ANKRD36C	ENSG00000174501.15	ENST00000295246.7:ENST00000456556.5:ENST00000531153.5:ENST00000534304.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	44	2	4.73474	4.91048	5.08622	0.0162835	0.00227525	0.101453	0.0437013
chr2	182944743	182944842	1285065	0	-	0.30303	(0.28,0.32]	chr2	135307	22	INTRON	INTRON	NCKAP1	ENSG00000061676.15	ENST00000361354.9:ENST00000360982.2:ENST00000478449.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	44	2	4.73474	4.91048	5.08622	0.0162835	0.00227525	0.101453	0.0437013
chr20	533623	533723	7303879	0	-	0.32	(0.28,0.32]	chr20	743573	52	INTRON	INTRON	CSNK2A1	ENSG00000101266.19	ENST00000646561.1:ENST00000217244.9:ENST00000643660.1:ENST00000645623.1:ENST00000400227.8:ENST00000349736.10:ENST00000644170.1:ENST00000643700.1:ENST00000645910.1:ENST00000645840.1:ENST00000646305.1:ENST00000645260.1:ENST00000642689.1:ENST00000645234.1:ENST00000646814.1:ENST00000646477.1:ENST00000644885.1:ENST00000644710.1:ENST00000647155.1:ENST00000644003.1:ENST00000645249.1:ENST00000647026.1:ENST00000400217.7:ENST00000647348.1:ENST00000643600.1:ENST00000643680.1:ENST00000460062.7:ENST00000643968.1:ENST00000644177.1:ENST00000609525.2:ENST00000645091.1:ENST00000609606.6:ENST00000608066.6:ENST00000646908.1:ENST00000645187.1:ENST00000642160.1:ENST00000608490.2:ENST00000643910.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	44	2	4.73474	4.91048	5.08622	0.0162835	0.00227525	0.101453	0.0437013
chr3	183854344	183854443	1881295	0	-	0.292929	(0.28,0.32]	chr3	188011	97	INTRON	INTRON	PARL	ENSG00000175193.14	ENST00000639100.1:ENST00000317096.9:ENST00000638817.1:ENST00000311101.9:ENST00000435888.5:ENST00000639900.1:ENST00000421484.5:ENST00000449306.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	44	2	4.73474	4.91048	5.08622	0.0162835	0.00227525	0.101453	0.0437013
chr6	24715847	24715947	3070693	0	-	0.31	(0.28,0.32]	chr6	285359	3	SS5_PROX	SS5_PROX:INTRON	C6orf62	ENSG00000112308.13	ENST00000378119.9:ENST00000378102.3	protein_coding	protein_coding	protein_coding	protein_coding	0	44	2	4.73474	4.91048	5.08622	0.0162835	0.00227525	0.101453	0.0437013
chr7	127861914	127862014	3404511	0	+	0.32	(0.28,0.32]	chr7	318146	171	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000468166.5:ENST00000465900.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	44	2	4.73474	4.91048	5.08622	0.0162835	0.00227525	0.101453	0.0437013
chr9	91931021	91931121	4285076	0	-	0.33	(0.32,0.35]	chr9	393926	67	INTRON	INTRON	ROR2	ENSG00000169071.15	ENST00000375715.5:ENST00000375708.4:ENST00000495386.5:ENST00000546883.1:ENST00000476440.1:ENST00000493846.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	100	2	3.57979	4.910435	6.24108	0.00118589	7.58731e-6	0.0315652	0.00196822
chr15	84553262	84553362	6251197	0	-	0.22	[0,0.28]	chr15	596581	66	INTRON	INTRON	UBE2Q2P1	ENSG00000189136.9	ENST00000354771.8:ENST00000339094.5:ENST00000561403.6:ENST00000558251.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	49	2	4.29536	4.910275	5.52519	0.0590175	8.21427e-4	0.167915	0.0261674
chr6	7238147	7238246	2799680	0	+	0.151515	[0,0.28]	chr6	263786	56	INTRON	INTRON	RREB1	ENSG00000124782.21	ENST00000379933.7:ENST00000379938.7:ENST00000349384.10:ENST00000334984.10	protein_coding	protein_coding	protein_coding	protein_coding	0	46	2	4.71017	4.91025	5.11033	0.0114708	0.00991388	0.0956037	0.0838372
chr15	73594927	73595027	6220792	0	-	0.4	(0.378,0.408]	chr15	593906	24	INTRON	INTRON	NPTN	ENSG00000156642.17	ENST00000351217.10:ENST00000345330.9:ENST00000565325.5:ENST00000562924.5:ENST00000563691.5:ENST00000565282.5:ENST00000564551.1:ENST00000563753.1:ENST00000567198.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	86	2	4.0017	4.9102049999999995	5.81871	1.62088e-4	7.73853e-5	0.0116382	0.00735438
chr6	78970378	78970476	3140973	0	-	0.295918	(0.28,0.32]	chr6	292772	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PHIP	ENSG00000146247.14	ENST00000275034.5:ENST00000479165.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	44	2	4.83165	4.910185	4.98872	0.00838468	0.00527257	0.0774402	0.0656295
chr1	65272816	65272916	135721	0	+	0.34	(0.32,0.35]	chr1	15346	75	INTRON	INTRON	DNAJC6	ENSG00000116675.16	ENST00000463018.5:ENST00000494710.6:ENST00000263441.11:ENST00000395325.7:ENST00000483402.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	92	2	3.82296	4.90986	5.99676	2.45656e-4	1.55894e-4	0.0138769	0.0113565
chr7	66713922	66714022	3325207	0	+	0.31	(0.28,0.32]	chr7	309227	13	INTRON	INTRON	RABGEF1	ENSG00000154710.18	ENST00000607882.5	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	0	48	2	4.2432	4.909685	5.57617	0.0479043	3.41866e-4	0.153019	0.0164909
chr8	55982272	55982371	3755373	0	+	0.282828	(0.28,0.32]	chr8	349311	121	INTRON	INTRON	LYN	ENSG00000254087.8	ENST00000519728.6:ENST00000520220.6:ENST00000420292.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	48	2	4.2432	4.909685	5.57617	0.0479043	3.41866e-4	0.153019	0.0164909
chr1	206645795	206645894	301746	0	+	0.353535	(0.35,0.378]	chr1	34677	64	INTRON	INTRON	DYRK3	ENSG00000143479.18	ENST00000367109.8:ENST00000367108.7:ENST00000489878.1:ENST00000649163.1:ENST00000441486.5:ENST00000367106.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	42	2	4.79079	4.909555	5.02832	0.00846427	0.00156444	0.0776969	0.0365263
chr15	48778904	48779003	6166355	0	-	0.363636	(0.35,0.378]	chr15	587640	55	INTRON	INTRON	CEP152	ENSG00000103995.14	ENST00000380950.7:ENST00000399334.7:ENST00000325747.9:ENST00000560322.5	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay	0	42	2	4.79079	4.909555	5.02832	0.00846427	0.00156444	0.0776969	0.0365263
chr2	177478129	177478227	926954	0	+	0.367347	(0.35,0.378]	chr2	101851	10	INTRON	INTRON	AGPS	ENSG00000018510.18	ENST00000679459.1:ENST00000637633.2:ENST00000680770.1:ENST00000680705.1:ENST00000681752.1:ENST00000681565.1:ENST00000680893.1:ENST00000681032.1:ENST00000679421.1:ENST00000680910.1:ENST00000409888.1:ENST00000642466.2:ENST00000264167.11:ENST00000680155.1:ENST00000679478.1:ENST00000681449.1:ENST00000681891.1:ENST00000681028.1:ENST00000680028.1:ENST00000679994.1:ENST00000680390.1:ENST00000681300.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	42	2	4.79079	4.909555	5.02832	0.00846427	0.00156444	0.0776969	0.0365263
chr5	176508902	176509000	2552788	0	+	0.377551	(0.35,0.378]	chr5	243725	21	UTR3	UTR3:EXON_MRNA	FAF2	ENSG00000113194.13	ENST00000261942.7	protein_coding	protein_coding	protein_coding	protein_coding	0	42	2	4.79079	4.909555	5.02832	0.00846427	0.00156444	0.0776969	0.0365263
chr8	129914914	129915014	4062913	0	-	0.36	(0.35,0.378]	chr8	369828	20	INTRON	INTRON	CYRIB	ENSG00000153310.21	ENST00000694912.1:ENST00000519824.6:ENST00000523288.5:ENST00000519110.5:ENST00000401979.6:ENST00000523509.5:ENST00000522746.5:ENST00000517654.5:ENST00000522250.5:ENST00000519540.5:ENST00000522941.5:ENST00000519142.5:ENST00000518879.5:ENST00000522702.5:ENST00000521223.5:ENST00000520204.5:ENST00000518283.5:ENST00000523993.5:ENST00000520254.5:ENST00000519020.5:ENST00000518167.5:ENST00000517672.5:ENST00000519070.5:ENST00000522361.1:ENST00000518344.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	42	2	4.79079	4.909555	5.02832	0.00846427	0.00156444	0.0776969	0.0365263
chr21	29040108	29040208	7390127	0	+	0.36	(0.35,0.378]	chr21	753004	1	SS3_PROX	SS3_PROX:INTRON	USP16	ENSG00000156256.15	ENST00000399975.7:ENST00000334352.8:ENST00000474835.5:ENST00000399976.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	42	2	4.89523	4.90939	4.92355	0.00573514	0.00253947	0.0657377	0.0465056
chr20	3919394	3919492	7227207	0	+	0.326531	(0.32,0.35]	chr20	734522	2	INTRON	INTRON	PANK2	ENSG00000125779.24	ENST00000497424.5:ENST00000316562.9:ENST00000610179.7:ENST00000643504.2:ENST00000336066.8:ENST00000646394.1:ENST00000621507.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	94	2	3.57731	4.90921	6.24111	7.67492e-4	5.18656e-5	0.0254532	0.00626846
chr3	64023179	64023274	1724089	0	-	0.694737	(0.57,1]	chr3	176324	5	EXON_MRNA	EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PSMD6	ENSG00000163636.11	ENST00000394431.6:ENST00000295901.9:ENST00000492933.5:ENST00000476464.5:ENST00000482510.5:ENST00000475036.1:ENST00000497323.5:ENST00000478185.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	58	2	4.067	4.90888	5.75076	2.30559e-5	1.73259e-6	0.00391568	7.91759e-4
chr1	193058195	193058293	612861	0	-	0.418367	(0.408,0.44]	chr1	72488	9	INTRON	INTRON	UCHL5	ENSG00000116750.14	ENST00000367455.8:ENST00000367454.6:ENST00000367450.7:ENST00000367451.8:ENST00000367449.5:ENST00000367448.5:ENST00000421683.1:ENST00000483156.1:ENST00000417752.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	41	2	4.85872	4.908445	4.95817	0.00372419	0.00221911	0.0535094	0.0435144
chr7	65974094	65974194	3538139	0	-	0.41	(0.408,0.44]	chr7	330007	4	SS5_PROX	SS5_PROX:INTRON	GUSB	ENSG00000169919.17	ENST00000304895.9:ENST00000466883.5:ENST00000430730.5:ENST00000447929.5:ENST00000421103.5:ENST00000462371.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	41	2	4.85872	4.908445	4.95817	0.00372419	0.00221911	0.0535094	0.0435144
chr3	138826608	138826708	1831419	0	-	0.29	(0.28,0.32]	chr3	184062	297	INTRON	INTRON	PIK3CB	ENSG00000051382.9	ENST00000674063.1:ENST00000477593.5:ENST00000462898.5:ENST00000483968.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	97	2	3.68354	4.908355	6.13317	5.5135e-4	1.54938e-4	0.0213455	0.0113252
chr9	136471474	136471574	4374921	0	-	0.46	(0.44,0.476]	chr9	403080	1	SS5_PROX	SS5_PROX:INTRON	SEC16A	ENSG00000148396.19	ENST00000290037.10:ENST00000313050.11:ENST00000371706.8:ENST00000684901.1:ENST00000690691.1:ENST00000431893.3	protein_coding	protein_coding	protein_coding	protein_coding	3	146	2	3.24166	4.90825	6.57484	8.05642e-5	2.99813e-7	0.00804467	2.73247e-4
chr12	48834918	48834997	5319651	0	-	0.417722	(0.408,0.44]	chr12	506473	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DDX23	ENSG00000174243.10	ENST00000308025.8:ENST00000550834.1:ENST00000552802.5:ENST00000547135.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	85	2	4.1271	4.90818	5.68926	2.2853e-4	3.62655e-5	0.0138641	0.00482747
chr14	102002266	102002351	5820633	0	+	0.423529	(0.408,0.44]	chr14	552084	2	SS3_PROX	SS3_PROX:INTRON	DYNC1H1	ENSG00000197102.14	ENST00000360184.10:ENST00000684561.1:ENST00000680313.1:ENST00000679720.1:ENST00000680715.1:ENST00000681283.1:ENST00000681822.1:ENST00000679910.1:ENST00000681574.1:ENST00000645039.2:ENST00000645149.2:ENST00000680200.1:ENST00000680120.1:ENST00000644881.2:ENST00000681066.1:ENST00000680423.1:ENST00000681536.1:ENST00000679486.1:ENST00000681010.1:ENST00000679629.1:ENST00000681123.1:ENST00000680874.1:ENST00000680137.1:ENST00000643508.2:ENST00000680808.1:ENST00000681311.1:ENST00000681859.1:ENST00000643684.1:ENST00000643958.2:ENST00000680001.1:ENST00000681668.1:ENST00000645114.2:ENST00000681751.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	85	2	3.75755	4.907945	6.05834	2.62433e-4	4.06336e-5	0.0143317	0.00539487
chr2	108745026	108745125	847673	0	+	0.343434	(0.32,0.35]	chr2	94821	40	INTRON	INTRON	RANBP2	ENSG00000153201.16	ENST00000283195.11	protein_coding	protein_coding	protein_coding	protein_coding	0	43	2	4.6938	4.907395	5.12099	0.0137794	0.00143632	0.0949306	0.0347139
chr3	14657103	14657200	1370345	0	+	0.340206	(0.32,0.35]	chr3	144423	11	INTRON	INTRON	CCDC174	ENSG00000154781.17	ENST00000383794.7:ENST00000303688.8:ENST00000463438.5:ENST00000465759.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	43	2	4.6938	4.907395	5.12099	0.0137794	0.00143632	0.0949306	0.0347139
chr4	150582803	150582902	2267394	0	-	0.474747	(0.44,0.476]	chr4	220688	4	EXON_LNCRNA	EXON_LNCRNA:INTRON	LRBA	ENSG00000198589.14	ENST00000357115.9:ENST00000651943.2:ENST00000510413.5:ENST00000509835.5:ENST00000648626.1:ENST00000651695.1:ENST00000651035.1:ENST00000507224.5:ENST00000513021.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	97	2	4.31592	4.90735	5.49878	1.52058e-4	2.33496e-5	0.0106137	0.00395389
chr10	928229	928329	4542553	0	-	0.28	[0,0.28]	chr10	419310	34	INTRON	INTRON	LARP4B	ENSG00000107929.16	ENST00000316157.8:ENST00000690516.1:ENST00000476529.5:ENST00000406525.6:ENST00000481118.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	173	2	2.76264	4.907265000000001	7.05189	0.00115414	7.41155e-6	0.0313436	0.00205092
chr1	212084134	212084234	307835	0	+	0.28	[0,0.28]	chr1	35527	30	INTRON	INTRON	DTL	ENSG00000143476.18	ENST00000542077.5:ENST00000366991.5:ENST00000475419.5:ENST00000489149.1:ENST00000463791.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	47	2	4.55618	4.907165	5.25815	0.0171034	0.0066548	0.110899	0.0703807
chr17	37300966	37301065	6761985	0	-	0.333333	(0.32,0.35]	chr17	664944	13	INTRON	INTRON	ACACA	ENSG00000278540.5	ENST00000616317.5:ENST00000614428.4:ENST00000613146.4:ENST00000615229.4:ENST00000621960.1:ENST00000617548.1:ENST00000616352.4:ENST00000614789.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	43	2	4.79482	4.906995	5.01917	0.0055659	0.00447781	0.0648867	0.0610799
chr7	17911433	17911533	3496276	0	-	0.49	(0.476,0.515]	chr7	326520	37	INTRON	INTRON	SNX13	ENSG00000071189.21	ENST00000428135.7:ENST00000611725.4:ENST00000409076.6:ENST00000444712.5:ENST00000482558.5:ENST00000409604.1:ENST00000475800.5:ENST00000474067.5:ENST00000471744.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	41	2	4.77856	4.90661	5.03466	0.00305743	0.00252065	0.0509893	0.0446195
chr5	60838925	60839025	2628405	0	-	0.53	(0.515,0.57]	chr5	249688	359	INTRON	INTRON	ELOVL7	ENSG00000164181.14	ENST00000508821.6:ENST00000425382.5:ENST00000505959.5:ENST00000507047.5:ENST00000511799.5:ENST00000514809.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	39	2	4.6831	4.90642	5.12974	0.00471288	4.54392e-4	0.0600108	0.0192381
chr6	21199463	21199558	2835045	0	+	0.515789	(0.515,0.57]	chr6	265709	10	INTRON	INTRON	CDKAL1	ENSG00000145996.11	ENST00000274695.8:ENST00000378610.1	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	4.6831	4.90642	5.12974	0.00471288	4.54392e-4	0.0600108	0.0192381
chr13	52218343	52218443	5597742	0	-	0.41	(0.408,0.44]	chr13	535139	240	INTRON	INTRON	ENSG00000217576	ENSG00000217576.7	ENST00000451298.1	lncRNA	lncRNA	lncRNA	lncRNA	0	42	2	4.62009	4.906055	5.19202	0.00504155	0.0016671	0.0646039	0.0369207
chr20	64018327	64018425	7301763	0	+	0.520408	(0.515,0.57]	chr20	743234	11	INTRON	INTRON	PRPF6	ENSG00000101161.8	ENST00000266079.5	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	4.76984	4.906045000000001	5.04225	0.00198034	0.00131841	0.0411469	0.0331539
chr6	35352145	35352245	2852074	0	+	0.46	(0.44,0.476]	chr6	269491	46	INTRON	INTRON	PPARD	ENSG00000112033.14	ENST00000418635.6:ENST00000448077.6:ENST00000360694.8:ENST00000311565.4:ENST00000337400.6	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	4.68564	4.905385000000001	5.12513	0.00816201	7.96486e-4	0.0766625	0.0258804
chr3	138169906	138170006	1828559	0	-	0.32	(0.28,0.32]	chr3	183772	4	SS5_PROX	SS5_PROX:INTRON	DBR1	ENSG00000138231.13	ENST00000260803.9:ENST00000477557.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	45	2	4.6061	4.90535	5.2046	0.0102724	0.00448664	0.089002	0.0593175
chr2	53874894	53874994	1119563	0	-	0.45	(0.44,0.476]	chr2	119870	4	SS3_PROX	SS3_PROX:INTRON	PSME4	ENSG00000068878.15	ENST00000404125.6:ENST00000389993.7:ENST00000476586.5:ENST00000466539.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	134	2	3.22811	4.90515	6.58219	5.22147e-5	2.09464e-6	0.00590253	0.00100071
chr18	26016729	26016825	6958970	0	-	0.364583	(0.35,0.378]	chr18	688400	6	UTR3	UTR3:EXON_MRNA	SS18	ENSG00000141380.14	ENST00000415083.7	protein_coding	protein_coding	protein_coding	protein_coding	4	162	2	2.90638	4.905	6.90362	1.28984e-4	8.69337e-7	0.00979119	5.74603e-4
chr19	52839269	52839366	7208306	0	-	0.474227	(0.44,0.476]	chr19	731593	14	UTR3	UTR3:EXON_MRNA:INTRON	ZNF28:ZNF468	ENSG00000198538.11:ENSG00000204604.13	ENST00000596559.5:ENST00000594602.5:ENST00000595646.6:ENST00000243639.8	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	4.78293	4.90498	5.02703	0.00292033	0.00278015	0.0494641	0.0469265
chr19	58189339	58189439	7106266	0	+	0.45	(0.44,0.476]	chr19	713269	19	INTRON	INTRON	ZNF274	ENSG00000171606.18	ENST00000424679.6:ENST00000617501.5:ENST00000621145.4:ENST00000345813.7:ENST00000619307.4:ENST00000615675.4:ENST00000326804.8:ENST00000610905.4:ENST00000594839.5:ENST00000601995.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	41	2	4.78293	4.90498	5.02703	0.00292033	0.00278015	0.0494641	0.0469265
chr6	4028360	4028460	2789768	0	+	0.47	(0.44,0.476]	chr6	263481	65	INTRON	INTRON	PRPF4B	ENSG00000112739.17	ENST00000480058.5:ENST00000337659.11	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	41	2	4.78293	4.90498	5.02703	0.00292033	0.00278015	0.0494641	0.0469265
chr8	100919897	100919997	4005644	0	-	0.3	(0.28,0.32]	chr8	366642	35	UTR3	UTR3:EXON_MRNA:INTRON	YWHAZ	ENSG00000164924.18	ENST00000395958.6:ENST00000395957.6:ENST00000457309.2:ENST00000395956.7:ENST00000353245.7:ENST00000523848.5:ENST00000521309.5:ENST00000522542.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	229	2	4.81189	4.90476	4.99763	4.64569e-6	3.80483e-7	0.00158097	3.17977e-4
chr6	122414541	122414639	2947470	0	+	0.357143	(0.35,0.378]	chr6	277462	5	INTRON	INTRON	HSF2	ENSG00000025156.13	ENST00000452194.5:ENST00000368455.9	protein_coding	protein_coding	protein_coding	protein_coding	0	42	2	4.82377	4.90469	4.98561	0.00474226	0.00325499	0.0600445	0.0524329
chr6	140897987	140898087	3241131	0	-	0.6	(0.57,1]	chr6	301068	4	SS5_PROX	SS5_PROX:INTRON	ENSG00000234147	ENSG00000234147.3	ENST00000650553.2:ENST00000692940.1:ENST00000683641.1:ENST00000682196.1:ENST00000684320.1:ENST00000683889.1:ENST00000683062.1:ENST00000682608.1:ENST00000455011.2:ENST00000682812.1:ENST00000683340.1:ENST00000683841.1:ENST00000683589.1:ENST00000684268.1:ENST00000683480.1:ENST00000684120.1	lncRNA	lncRNA	lncRNA	lncRNA	3	135	2	4.59363	4.9042200000000005	5.21481	4.63535e-9	1.68786e-9	1.61504e-5	1.12005e-5
chr11	31669031	31669130	4762416	0	+	0.282828	(0.28,0.32]	chr11	440407	47	INTRON	INTRON	ELP4	ENSG00000109911.19	ENST00000639878.1:ENST00000379163.10:ENST00000350638.10:ENST00000638347.1:ENST00000640961.2:ENST00000640081.1:ENST00000640342.1:ENST00000640231.1:ENST00000638917.1:ENST00000395934.2:ENST00000640954.1:ENST00000638184.1:ENST00000638984.1:ENST00000640790.1:ENST00000639097.1:ENST00000638828.1:ENST00000639182.1:ENST00000638317.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	44	2	4.66359	4.9035	5.14341	0.0193496	0.00185891	0.108861	0.039946
chr7	92567448	92567547	3570686	0	-	0.313131	(0.28,0.32]	chr7	332714	10	INTRON	INTRON	FAM133B	ENSG00000234545.8	ENST00000445716.6:ENST00000438306.5:ENST00000415397.6:ENST00000481407.5:ENST00000427372.5:ENST00000494079.1:ENST00000468931.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	44	2	4.66359	4.9035	5.14341	0.0193496	0.00185891	0.108861	0.039946
chr9	4814869	4814969	4095085	0	+	0.32	(0.28,0.32]	chr9	373155	213	INTRON	INTRON	RCL1	ENSG00000120158.12	ENST00000381750.9:ENST00000381732.3:ENST00000442869.5:ENST00000473230.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	44	2	4.66359	4.9035	5.14341	0.0193496	0.00185891	0.108861	0.039946
chr1	109405760	109405859	521093	0	-	0.353535	(0.35,0.378]	chr1	61220	33	INTRON	INTRON	PSMA5	ENSG00000143106.13	ENST00000271308.9:ENST00000490870.5:ENST00000538610.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	44	2	4.49626	4.9034200000000006	5.31058	0.00917582	0.00160599	0.0855292	0.0364977
chr7	121127981	121128081	3395041	0	+	0.37	(0.35,0.378]	chr7	317742	2	SS3_PROX	SS3_PROX:INTRON	CPED1	ENSG00000106034.18	ENST00000310396.10:ENST00000428526.5:ENST00000450913.6:ENST00000423795.5:ENST00000443817.1	protein_coding	protein_coding	protein_coding	protein_coding	1	88	2	3.93917	4.903074999999999	5.86698	1.76496e-4	1.19694e-4	0.01216	0.00936986
chr10	87100186	87100286	4481294	0	+	0.29	(0.28,0.32]	chr10	412411	28	INTRON	INTRON	SHLD2	ENSG00000122376.12	ENST00000437629.6:ENST00000298784.5:ENST00000298786.5	protein_coding	protein_coding	protein_coding	protein_coding	0	44	2	4.76031	4.90305	5.04579	0.00714672	0.00656106	0.0735539	0.0723634
chr20	1450211	1450309	7305461	0	-	0.316327	(0.28,0.32]	chr20	743716	37	INTRON	INTRON	NSFL1C	ENSG00000088833.18	ENST00000476071.5:ENST00000555944.5:ENST00000353088.6:ENST00000461211.5:ENST00000216879.9:ENST00000381653.9:ENST00000555568.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	44	2	4.76031	4.90305	5.04579	0.00714672	0.00656106	0.0735539	0.0723634
chr22	50363827	50363927	7544394	0	+	0.31	(0.28,0.32]	chr22	771015	199	INTRON	INTRON	PPP6R2	ENSG00000100239.16	ENST00000359139.7:ENST00000395741.7:ENST00000612753.5:ENST00000395744.7	protein_coding	protein_coding	protein_coding	protein_coding	0	44	2	4.76031	4.90305	5.04579	0.00714672	0.00656106	0.0735539	0.0723634
chr9	137100442	137100536	4222790	0	+	0.43617	(0.408,0.44]	chr9	387926	7	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	MAN1B1	ENSG00000177239.16	ENST00000682881.1:ENST00000683324.1:ENST00000684138.1:ENST00000683135.1:ENST00000542372.2:ENST00000371587.9:ENST00000684366.1:ENST00000684229.1:ENST00000683355.1:ENST00000682117.1:ENST00000683475.1:ENST00000682425.1:ENST00000682210.1:ENST00000684645.1:ENST00000683979.1:ENST00000371589.9:ENST00000535144.6:ENST00000684272.1:ENST00000475449.7:ENST00000684759.1:ENST00000545539.6:ENST00000684144.1:ENST00000683987.1:ENST00000682212.1:ENST00000544448.6:ENST00000684297.1:ENST00000474902.5:ENST00000682964.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	41	2	4.78348	4.90188	5.02028	0.00303216	0.00290352	0.0494641	0.0493883
chr7	24886203	24886302	3504885	0	-	0.40404	(0.378,0.408]	chr7	327103	138	INTRON	INTRON	OSBPL3	ENSG00000070882.13	ENST00000313367.7:ENST00000409863.5:ENST00000396431.5:ENST00000409452.5:ENST00000409759.5:ENST00000409555.5:ENST00000396429.5:ENST00000409069.5:ENST00000415162.5:ENST00000441059.5:ENST00000415952.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	44	2	4.42349	4.90044	5.37739	0.00992961	0.0010014	0.0877296	0.0288906
chr1	65311137	65311237	136106	0	+	0.28	[0,0.28]	chr1	15352	8	INTRON	INTRON	DNAJC6	ENSG00000116675.16	ENST00000463018.5:ENST00000494710.6:ENST00000263441.11:ENST00000395325.7:ENST00000483402.1:ENST00000371069.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	104	2	3.93888	4.900265	5.86165	0.00101071	2.29361e-4	0.0291154	0.013345
chr1	176118877	176118977	590820	0	-	0.28	[0,0.28]	chr1	70926	18	INTRON	INTRON	COP1	ENSG00000143207.21	ENST00000367669.8:ENST00000367667.5:ENST00000367666.5:ENST00000649803.1:ENST00000308769.12:ENST00000459744.5:ENST00000498306.5:ENST00000491600.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	45	2	4.82433	4.900259999999999	4.97619	0.0200334	0.00535756	0.109608	0.0663076
chr14	52469337	52469436	5893645	0	-	0.212121	[0,0.28]	chr14	559676	60	INTRON	INTRON	TXNDC16	ENSG00000087301.9	ENST00000281741.9:ENST00000554399.1:ENST00000555312.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	45	2	4.82433	4.900259999999999	4.97619	0.0200334	0.00535756	0.109608	0.0663076
chr2	8823363	8823462	1061892	0	-	0.181818	[0,0.28]	chr2	113284	42	INTRON	INTRON	KIDINS220	ENSG00000134313.17	ENST00000569008.2:ENST00000689369.1:ENST00000693394.1:ENST00000689852.1:ENST00000693432.1:ENST00000256707.8:ENST00000687912.1:ENST00000685097.1:ENST00000473731.5:ENST00000687894.1:ENST00000691030.1:ENST00000686906.1:ENST00000488729.5:ENST00000489024.5:ENST00000459813.2:ENST00000692419.1:ENST00000689531.1:ENST00000686179.1:ENST00000692889.1:ENST00000687240.1:ENST00000690607.1:ENST00000319688.5:ENST00000689114.1:ENST00000685274.1:ENST00000693366.1:ENST00000693249.1:ENST00000687526.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	45	2	4.82433	4.900259999999999	4.97619	0.0200334	0.00535756	0.109608	0.0663076
chr4	39500042	39500142	2129368	0	-	0.25	[0,0.28]	chr4	209936	14	UTR3	UTR3:EXON_MRNA	UGDH	ENSG00000109814.12	ENST00000316423.11:ENST00000501493.6:ENST00000506179.5:ENST00000507089.5	protein_coding	protein_coding	protein_coding	protein_coding	0	45	2	4.82433	4.900259999999999	4.97619	0.0200334	0.00535756	0.109608	0.0663076
chr7	105495753	105495852	3604593	0	-	0.242424	[0,0.28]	chr7	336252	1	INTRON	INTRON	PUS7	ENSG00000091127.14	ENST00000481939.5:ENST00000469408.6:ENST00000356362.6:ENST00000482157.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	45	2	4.82433	4.900259999999999	4.97619	0.0200334	0.00535756	0.109608	0.0663076
chr8	104564936	104565036	4014481	0	-	0.18	[0,0.28]	chr8	367439	326	INTRON	INTRON	LRP12	ENSG00000147650.12	ENST00000424843.6:ENST00000276654.10:ENST00000520770.1:ENST00000519675.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	45	2	4.82433	4.900259999999999	4.97619	0.0200334	0.00535756	0.109608	0.0663076
chr7	152279337	152279436	3679715	0	-	0.242424	[0,0.28]	chr7	341617	51	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000684262.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	45	2	4.88625	4.900195	4.91414	0.0173315	0.0064519	0.104099	0.0730725
chr4	83011801	83011899	2181261	0	-	0.326531	(0.32,0.35]	chr4	214525	11	INTRON	INTRON	LIN54	ENSG00000189308.11	ENST00000510557.5:ENST00000505397.1:ENST00000509748.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	45	2	4.46758	4.89988	5.33218	0.0119306	0.00204346	0.0962115	0.04086
chr2	216523472	216523572	1016325	0	+	0.33	(0.32,0.35]	chr2	108200	23	INTRON	INTRON	RPL37A	ENSG00000197756.10	ENST00000600880.5:ENST00000446558.5:ENST00000598925.5:ENST00000427280.6:ENST00000441179.2	protein_coding	protein_coding	protein_coding	protein_coding	0	46	2	4.273	4.89931	5.52562	0.0368357	2.76065e-4	0.138959	0.0147997
chr3	185749805	185749905	1885596	0	-	0.42	(0.408,0.44]	chr3	188573	511	INTRON	INTRON	IGF2BP2	ENSG00000073792.16	ENST00000382199.7:ENST00000346192.7:ENST00000457616.6:ENST00000421047.3:ENST00000461957.5:ENST00000493302.5:ENST00000466476.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	121	2	3.20009	4.898815	6.59754	4.59843e-4	2.54176e-7	0.01978	2.46133e-4
chr1	185140622	185140722	603289	0	-	0.36	(0.35,0.378]	chr1	71822	4	SS3_PROX	SS3_PROX:INTRON	TRMT1L	ENSG00000121486.12	ENST00000367506.10	protein_coding	protein_coding	protein_coding	protein_coding	0	43	2	4.48184	4.8987	5.31556	0.0191702	4.97087e-4	0.108861	0.0201536
chr15	51562281	51562380	6175826	0	-	0.343434	(0.32,0.35]	chr15	588745	145	INTRON	INTRON	DMXL2	ENSG00000104093.14	ENST00000251076.9:ENST00000543779.6:ENST00000560891.6:ENST00000449909.7:ENST00000560421.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	43	2	4.61889	4.898555	5.17822	0.0166646	0.00115625	0.102621	0.0313436
chr5	146257751	146257849	2514665	0	+	0.336735	(0.32,0.35]	chr5	240206	23	INTRON	INTRON	ENSG00000275740:RBM27	ENSG00000275740.1:ENSG00000091009.8	ENST00000506502.2:ENST00000265271.7	protein_coding	protein_coding	protein_coding	protein_coding	0	43	2	4.61889	4.898555	5.17822	0.0166646	0.00115625	0.102621	0.0313436
chr1	113410353	113410453	188912	0	+	0.23	[0,0.28]	chr1	20964	60	INTRON	INTRON	MAGI3	ENSG00000081026.19	ENST00000307546.14:ENST00000369617.8:ENST00000369615.5:ENST00000369611.4:ENST00000486456.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	46	2	4.63523	4.898265	5.1613	0.0139836	0.00866441	0.10247	0.0787025
chr3	187058431	187058531	1587475	0	+	0.26	[0,0.28]	chr3	164399	67	INTRON	INTRON	ST6GAL1	ENSG00000073849.16	ENST00000169298.8:ENST00000457772.6:ENST00000455441.5:ENST00000427315.5:ENST00000677292.1:ENST00000676633.1:ENST00000448044.5:ENST00000416235.6:ENST00000448449.1:ENST00000442023.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	46	2	4.63523	4.898265	5.1613	0.0139836	0.00866441	0.10247	0.0787025
chr3	47597114	47597213	1683193	0	-	0.484848	(0.476,0.515]	chr3	171963	59	INTRON	INTRON	SMARCC1	ENSG00000173473.11	ENST00000254480.10:ENST00000425518.5:ENST00000492896.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	86	2	3.58243	4.89816	6.21389	6.18479e-4	1.41639e-5	0.0223951	0.00299745
chr11	77700320	77700420	4994762	0	-	0.34	(0.32,0.35]	chr11	472011	2	SS5_PROX	SS5_PROX:INTRON	RSF1	ENSG00000048649.14	ENST00000308488.11:ENST00000480887.5:ENST00000526324.5:ENST00000531768.1:ENST00000532556.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	43	2	4.7197	4.897995	5.07629	0.00568521	0.00468114	0.0678837	0.0600108
chr6	35913768	35913868	3088753	0	-	0.35	(0.32,0.35]	chr6	288898	84	INTRON	INTRON	SRPK1	ENSG00000096063.16	ENST00000373825.7:ENST00000423325.6:ENST00000346162.10:ENST00000361690.7:ENST00000510290.5:ENST00000508473.5:ENST00000512445.5:ENST00000513367.1:ENST00000507909.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	43	2	4.7197	4.897995	5.07629	0.00568521	0.00468114	0.0678837	0.0600108
chr3	67486700	67486800	1732266	0	-	0.37	(0.35,0.378]	chr3	176554	773	INTRON	INTRON	SUCLG2	ENSG00000172340.15	ENST00000493112.5:ENST00000307227.10:ENST00000460567.5:ENST00000492795.1	protein_coding	protein_coding	protein_coding	protein_coding	0	43	2	4.58537	4.897775	5.21018	0.00703328	0.00228003	0.0754576	0.0426265
chr5	88232123	88232223	2669373	0	-	0.36	(0.35,0.378]	chr5	252687	32	INTRON	INTRON	TMEM161B	ENSG00000164180.14	ENST00000514135.5:ENST00000296595.11:ENST00000511087.5:ENST00000510089.5:ENST00000506536.5:ENST00000512429.5:ENST00000507872.1:ENST00000509387.5:ENST00000503755.5:ENST00000513487.5:ENST00000515477.5:ENST00000503943.5:ENST00000503194.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	43	2	4.58537	4.897775	5.21018	0.00703328	0.00228003	0.0754576	0.0426265
chr1	21701297	21701397	396015	0	-	0.41	(0.408,0.44]	chr1	47218	4	SS5_PROX	SS5_PROX:INTRON	USP48	ENSG00000090686.16	ENST00000400301.5:ENST00000308271.14:ENST00000374732.7:ENST00000529637.5:ENST00000464577.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	112	2	3.67904	4.897705	6.11637	3.037e-5	2.07254e-5	0.00456454	0.00353137
chr1	100922241	100922341	174605	0	+	0.4	(0.378,0.408]	chr1	18963	4	SS5_PROX	SS5_PROX:INTRON	SLC30A7	ENSG00000162695.12	ENST00000370112.8:ENST00000357650.9	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	4.87762	4.897690000000001	4.91776	0.00553849	0.00196368	0.0648867	0.0411469
chr16	53270125	53270225	6352907	0	+	0.4	(0.378,0.408]	chr16	609817	16	INTRON	INTRON	CHD9	ENSG00000177200.18	ENST00000447540.6:ENST00000566029.5:ENST00000615216.4:ENST00000564845.5:ENST00000398510.7:ENST00000565803.2:ENST00000219084.10	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	41	2	4.87762	4.897690000000001	4.91776	0.00553849	0.00196368	0.0648867	0.0411469
chr6	160106466	160106565	3024414	0	+	0.20202	[0,0.28]	chr6	282288	15	UTR3	UTR3:EXON_MRNA:INTRON	IGF2R	ENSG00000197081.16	ENST00000676781.1:ENST00000677704.1:ENST00000356956.6:ENST00000650503.1:ENST00000677628.1:ENST00000569097.2:ENST00000475584.1:ENST00000678224.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	45	2	4.75964	4.89766	5.03568	0.0232081	0.00446141	0.118148	0.0610799
chr1	90992264	90992364	502230	0	-	0.22	[0,0.28]	chr1	59504	95	INTRON	INTRON	ZNF644	ENSG00000122482.22	ENST00000370440.5:ENST00000337393.10:ENST00000347275.9:ENST00000361321.5:ENST00000467231.5:ENST00000498303.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	45	2	4.84931	4.897460000000001	4.94561	0.0150263	0.00779241	0.0994339	0.0787356
chr2	99483133	99483233	1189813	0	-	0.23	[0,0.28]	chr2	127721	178	INTRON	INTRON	REV1	ENSG00000135945.10	ENST00000393445.7:ENST00000258428.8:ENST00000413697.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	45	2	4.84931	4.897460000000001	4.94561	0.0150263	0.00779241	0.0994339	0.0787356
chr2	47866192	47866292	1115720	0	-	0.37	(0.35,0.378]	chr2	119689	3	SS3_PROX	SS3_PROX:INTRON	FBXO11	ENSG00000138081.22	ENST00000684712.1:ENST00000682451.1:ENST00000403359.8:ENST00000402508.5:ENST00000683894.1:ENST00000681999.1:ENST00000682975.1:ENST00000684085.1:ENST00000492225.5:ENST00000424163.2:ENST00000480038.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	42	2	4.64457	4.897365	5.15016	0.012652	9.78549e-4	0.0926667	0.0287765
chr9	4810082	4810182	4095037	0	+	0.36	(0.35,0.378]	chr9	373155	165	INTRON	INTRON	RCL1	ENSG00000120158.12	ENST00000381750.9:ENST00000381732.3:ENST00000442869.5:ENST00000473230.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	42	2	4.64457	4.897365	5.15016	0.012652	9.78549e-4	0.0926667	0.0287765
chr20	47648604	47648704	7282486	0	+	0.48	(0.476,0.515]	chr20	740567	2	SS3_PROX	SS3_PROX:INTRON	NCOA3	ENSG00000124151.19	ENST00000371998.8:ENST00000372004.7:ENST00000371997.3	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	4.61402	4.897205	5.18039	0.00947755	6.58744e-4	0.0817766	0.0232396
chr7	100023018	100023118	3363165	0	+	0.48	(0.476,0.515]	chr7	314221	2	SS3_PROX	SS3_PROX:INTRON	ZKSCAN1	ENSG00000106261.17	ENST00000535170.5:ENST00000324306.11:ENST00000426572.5:ENST00000482979.5:ENST00000432317.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	41	2	4.61402	4.897205	5.18039	0.00947755	6.58744e-4	0.0817766	0.0232396
chr1	150830301	150830382	552509	0	-	0.432099	(0.408,0.44]	chr1	64962	5	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	ARNT	ENSG00000143437.21	ENST00000358595.10:ENST00000471844.6:ENST00000354396.6:ENST00000515192.5:ENST00000505755.5:ENST00000478972.2:ENST00000512296.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	84	2	4.06657	4.89678	5.72699	1.93446e-4	5.10925e-5	0.0127226	0.00585477
chr7	116234919	116235019	3382356	0	+	0.39	(0.378,0.408]	chr7	316853	3	SS5_PROX	SS5_PROX:INTRON	TES	ENSG00000135269.18	ENST00000461440.5:ENST00000358204.9:ENST00000455989.1:ENST00000492891.5:ENST00000496871.1:ENST00000393481.6:ENST00000485009.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	45	2	4.21563	4.896725	5.57782	0.0315429	1.18586e-4	0.13151	0.00930884
chr2	241133802	241133899	1347449	0	-	0.505155	(0.476,0.515]	chr2	141421	9	EXON_MRNA	EXON_MRNA:INTRON	PASK	ENSG00000115687.14	ENST00000234040.9:ENST00000544142.5:ENST00000405260.5:ENST00000358649.8:ENST00000403638.7:ENST00000493544.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	41	2	4.69918	4.896705	5.09423	0.00400966	0.00204588	0.057767	0.04086
chr4	183699980	183700077	2086595	0	+	0.505155	(0.476,0.515]	chr4	206268	18	INTRON	INTRON	TRAPPC11	ENSG00000168538.16	ENST00000357207.8:ENST00000334690.11:ENST00000505676.5:ENST00000512476.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	41	2	4.69918	4.896705	5.09423	0.00400966	0.00204588	0.057767	0.04086
chr10	48307420	48307507	4430994	0	+	0.609195	(0.57,1]	chr10	408556	3	SS5_PROX	SS5_PROX:INTRON	MAPK8	ENSG00000107643.17	ENST00000395611.7:ENST00000432379.5:ENST00000374189.6:ENST00000429041.6:ENST00000374179.8:ENST00000426557.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	158	2	4.32773	4.896599999999999	5.46547	1.99281e-9	2.06614e-10	1.23872e-5	1.74811e-6
chr3	47689186	47689286	1684136	0	-	0.3	(0.28,0.32]	chr3	172047	4	SS5_PROX	SS5_PROX:INTRON	SMARCC1	ENSG00000173473.11	ENST00000254480.10:ENST00000425518.5:ENST00000462198.5:ENST00000485737.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	177	2	3.08117	4.89622	6.71127	6.76674e-5	1.09432e-5	0.00681897	0.00261949
chr15	89196908	89197007	6095666	0	+	0.373737	(0.35,0.378]	chr15	580055	16	UTR3	UTR3:EXON_MRNA	ABHD2	ENSG00000140526.18	ENST00000352732.10	protein_coding	protein_coding	protein_coding	protein_coding	0	46	2	4.29961	4.896095000000001	5.49258	0.0158483	8.19894e-4	0.109464	0.0264086
chr1	202340498	202340597	619845	0	-	0.343434	(0.32,0.35]	chr1	73518	43	INTRON	INTRON	UBE2T	ENSG00000077152.11	ENST00000487227.6:ENST00000646595.1:ENST00000646651.1:ENST00000643045.1:ENST00000460852.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	44	2	4.55661	4.895905	5.2352	0.00927858	0.0028268	0.0855292	0.0472361
chr7	96228324	96228424	3575316	0	-	0.35	(0.32,0.35]	chr7	333059	82	INTRON	INTRON	SLC25A13	ENSG00000004864.14	ENST00000265631.10:ENST00000416240.6:ENST00000472162.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	44	2	4.55661	4.895905	5.2352	0.00927858	0.0028268	0.0855292	0.0472361
chr15	72249617	72249715	6219422	0	-	0.469388	(0.44,0.476]	chr15	593621	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PARP6	ENSG00000137817.17	ENST00000569795.6:ENST00000569173.5:ENST00000287196.13:ENST00000413097.6:ENST00000260376.11:ENST00000616176.4:ENST00000569972.5:ENST00000565443.5:ENST00000544520.5:ENST00000567974.5:ENST00000564610.5:ENST00000567440.5:ENST00000567263.5:ENST00000566831.5:ENST00000419739.7:ENST00000567042.1:ENST00000569890.1:ENST00000568213.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	41	2	4.60647	4.89564	5.18481	0.0102339	6.21872e-4	0.0850389	0.0223951
chr1	206604108	206604208	624783	0	-	0.55	(0.515,0.57]	chr1	74399	1	SS5_PROX	SS5_PROX:INTRON	EIF2D	ENSG00000143486.16	ENST00000271764.7:ENST00000367114.7:ENST00000613435.1:ENST00000437518.1:ENST00000461334.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	39	2	4.59914	4.89561	5.19208	0.00616166	3.4344e-4	0.0676501	0.0164987
chr11	73759847	73759947	4985781	0	-	0.53	(0.515,0.57]	chr11	470893	4	SS5_PROX	SS5_PROX:INTRON	RAB6A	ENSG00000175582.20	ENST00000310653.10:ENST00000336083.8:ENST00000541973.5:ENST00000536566.5:ENST00000541588.5:ENST00000545625.5:ENST00000540771.5:ENST00000537446.5:ENST00000400470.3:ENST00000541795.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	39	2	4.59914	4.89561	5.19208	0.00616166	3.4344e-4	0.0676501	0.0164987
chr13	99251916	99252015	5524951	0	+	0.494949	(0.476,0.515]	chr13	528241	69	INTRON	INTRON	UBAC2	ENSG00000134882.16	ENST00000355700.9:ENST00000403766.8:ENST00000468067.5:ENST00000473091.5:ENST00000376440.6:ENST00000494576.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	43	2	4.43093	4.895440000000001	5.35995	0.00931369	7.54256e-4	0.0855292	0.0251179
chr11	66660661	66660761	4811257	0	+	0.55	(0.515,0.57]	chr11	447918	84	INTRON	INTRON	RBM4	ENSG00000173933.21	ENST00000396053.9	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	4.68568	4.89508	5.10448	0.00270027	0.0010345	0.0479115	0.029231300000000002
chr18	23525174	23525270	6884114	0	+	0.53125	(0.515,0.57]	chr18	682307	3	INTRON	INTRON	RMC1	ENSG00000141452.10	ENST00000615148.4:ENST00000269221.8:ENST00000589215.5:ENST00000590868.5:ENST00000590870.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	39	2	4.68568	4.89508	5.10448	0.00270027	0.0010345	0.0479115	0.029231300000000002
chr6	17787475	17787575	3066515	0	-	0.52	(0.515,0.57]	chr6	284948	3	SS5_PROX	SS5_PROX:INTRON	KIF13A	ENSG00000137177.20	ENST00000378814.9:ENST00000502297.5:ENST00000259711.11:ENST00000378826.6:ENST00000378843.6:ENST00000636847.1:ENST00000358380.10:ENST00000506044.1:ENST00000514714.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	39	2	4.68568	4.89508	5.10448	0.00270027	0.0010345	0.0479115	0.029231300000000002
chr15	84548273	84548373	6251147	0	-	0.45	(0.44,0.476]	chr15	596581	16	INTRON	INTRON	UBE2Q2P1	ENSG00000189136.9	ENST00000354771.8:ENST00000339094.5:ENST00000561403.6:ENST00000558251.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	41	2	4.70355	4.8950700000000005	5.08659	0.00383786	0.00226401	0.0562562	0.0425438
chr22	42268964	42269057	7593551	0	-	0.451613	(0.44,0.476]	chr22	777721	8	UTR5	UTR5:EXON_MRNA:INTRON	TCF20	ENSG00000100207.21	ENST00000359486.8:ENST00000677622.1:ENST00000683686.1:ENST00000675876.1:ENST00000515426.1	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	4.70355	4.8950700000000005	5.08659	0.00383786	0.00226401	0.0562562	0.0425438
chr19	55133674	55133774	7212708	0	-	0.38	(0.378,0.408]	chr19	732394	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TNNT1	ENSG00000105048.18	ENST00000588981.6:ENST00000356783.9:ENST00000291901.12:ENST00000588426.5:ENST00000587758.5:ENST00000593194.5:ENST00000589745.5:ENST00000587465.6:ENST00000585321.6:ENST00000587089.6:ENST00000586649.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	95	2	4.08528	4.894895	5.70451	9.30621e-5	6.32265e-5	0.00857086	0.00658818
chr12	69270404	69270503	5163826	0	+	0.30303	(0.28,0.32]	chr12	489054	10	UTR3	UTR3:EXON_MRNA	CPSF6	ENSG00000111605.18	ENST00000435070.7:ENST00000650046.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	154	2	3.1504	4.89466	6.63892	1.32696e-4	1.55907e-5	0.00992715	0.0031803
chr2	175940887	175940987	1272583	0	-	0.4	(0.378,0.408]	chr2	134540	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	LNPK	ENSG00000144320.14	ENST00000272748.9:ENST00000544803.5:ENST00000409660.5:ENST00000431754.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	41	2	4.73839	4.89465	5.05091	0.00837252	0.00118558	0.0774402	0.031662
chr4	2837018	2837117	1914981	0	+	0.40404	(0.378,0.408]	chr4	192238	33	UTR3	UTR3:EXON_MRNA	SH3BP2	ENSG00000087266.17	ENST00000503393.8:ENST00000435136.8:ENST00000356331.9	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	4.73839	4.89465	5.05091	0.00837252	0.00118558	0.0774402	0.031662
chr8	47816354	47816453	3944242	0	-	0.393939	(0.378,0.408]	chr8	361605	87	INTRON	INTRON	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	4.73839	4.89465	5.05091	0.00837252	0.00118558	0.0774402	0.031662
chr12	123391131	123391217	5242647	0	+	0.406977	(0.378,0.408]	chr12	498186	5	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	KMT5A	ENSG00000183955.14	ENST00000402868.8:ENST00000437519.5:ENST00000478781.6:ENST00000461103.5:ENST00000462311.1:ENST00000437502.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	157	2	3.29291	4.894375	6.49584	1.04781e-5	5.55891e-6	0.0023592	0.00176075
chr16	53082365	53082465	6350992	0	+	0.45	(0.44,0.476]	chr16	609666	269	INTRON	INTRON	CHD9	ENSG00000177200.18	ENST00000447540.6:ENST00000566029.5:ENST00000615216.4:ENST00000561869.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	43	2	4.43525	4.89376	5.35227	0.00897296	8.47974e-4	0.0849778	0.0267232
chr10	79765737	79765835	4657072	0	-	0.295918	(0.28,0.32]	chr10	429004	32	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	NUTM2B-AS1	ENSG00000225484.7	ENST00000671459.1:ENST00000596088.5:ENST00000600376.5:ENST00000601369.6:ENST00000662025.1:ENST00000670682.1:ENST00000619625.4:ENST00000658528.1:ENST00000477192.6:ENST00000610681.1:ENST00000665716.1:ENST00000483080.6:ENST00000661316.1	lncRNA	lncRNA	lncRNA	lncRNA	0	44	2	4.58875	4.893585	5.19842	0.0230574	0.00152333	0.118056	0.0360297
chr18	31922767	31922867	6961194	0	-	0.51	(0.476,0.515]	chr18	688780	47	INTRON	INTRON	TRAPPC8	ENSG00000153339.15	ENST00000283351.10:ENST00000580104.5:ENST00000582539.5:ENST00000582513.5:ENST00000578658.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	42	2	4.44128	4.893585	5.34589	0.0151924	3.224e-4	0.0994339	0.0159645
chr2	85016642	85016741	820719	0	+	0.313131	(0.28,0.32]	chr2	91425	22	INTRON	INTRON	KCMF1	ENSG00000176407.18	ENST00000456682.1:ENST00000409785.9:ENST00000428691.5:ENST00000453448.1	protein_coding	protein_coding	protein_coding	protein_coding	0	44	2	4.58875	4.893585	5.19842	0.0230574	0.00152333	0.118056	0.0360297
chr17	19189760	19189857	6740865	0	-	0.587629	(0.57,1]	chr17	661759	2	EXON_SMALL	EXON_SMALL	SNORD3C	ENSG00000264940.5	ENST00000580533.1	snoRNA	snoRNA	snoRNA	snoRNA	10	356	2	4.64397	4.893330000000001	5.14269	3.40333e-9	1e-12	1.74088e-5	4.97648e-8
chr7	139383637	139383736	3437833	0	+	0.535354	(0.515,0.57]	chr7	320340	71	INTRON	INTRON	LUC7L2:FMC1-LUC7L2	ENSG00000146963.18:ENSG00000269955.2	ENST00000541170.7:ENST00000541515.3:ENST00000608368.5:ENST00000619796.4:ENST00000354926.9:ENST00000456182.5:ENST00000263545.7:ENST00000463912.5:ENST00000498518.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	44	2	4.08538	4.89314	5.7009	0.0253843	2.61423e-5	0.12011	0.00402177
chr1	70174009	70174109	479576	0	-	0.3	(0.28,0.32]	chr1	57652	3	SS3_PROX	SS3_PROX:INTRON	LRRC40	ENSG00000066557.6	ENST00000370952.4	protein_coding	protein_coding	protein_coding	protein_coding	0	44	2	4.68527	4.89298	5.10069	0.00819419	0.00610574	0.0810802	0.0676501
chr13	64059178	64059278	5606464	0	-	0.3	(0.28,0.32]	chr13	535589	243	INTRON	INTRON	LINC00355	ENSG00000227674.3	ENST00000650541.1:ENST00000456627.1:ENST00000669788.1:ENST00000654282.1	lncRNA	lncRNA	lncRNA	lncRNA	0	44	2	4.68527	4.89298	5.10069	0.00819419	0.00610574	0.0810802	0.0676501
chrX	154705445	154705545	7914860	0	-	0.32	(0.28,0.32]	chrX	806091	50	INTRON	INTRON	GAB3	ENSG00000160219.12	ENST00000496390.5:ENST00000424127.3:ENST00000369575.7:ENST00000369568.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	44	2	4.68527	4.89298	5.10069	0.00819419	0.00610574	0.0810802	0.0676501
chr15	49218206	49218304	6019597	0	+	0.316327	(0.28,0.32]	chr15	573707	5	INTRON	INTRON	GALK2	ENSG00000156958.15	ENST00000559883.5:ENST00000559963.5:ENST00000327171.7:ENST00000560654.5:ENST00000558775.5:ENST00000559040.1:ENST00000396509.6:ENST00000558956.5:ENST00000559208.5:ENST00000560031.6:ENST00000560119.5:ENST00000558145.5:ENST00000544523.5:ENST00000560138.5:ENST00000559423.5:ENST00000559454.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	154	2	3.22279	4.8927700000000005	6.56275	8.95937e-5	2.24795e-5	0.0079464	0.00386909
chr1	161796891	161796990	236161	0	+	0.262626	[0,0.28]	chr1	28552	42	INTRON	INTRON	ATF6	ENSG00000118217.7	ENST00000680688.1:ENST00000679853.1:ENST00000681738.1:ENST00000681801.1:ENST00000681779.1:ENST00000367942.4:ENST00000681001.1:ENST00000679886.1:ENST00000681169.1:ENST00000681492.1:ENST00000680481.1:ENST00000680180.1:ENST00000681187.1:ENST00000680462.1:ENST00000681557.1:ENST00000681912.1:ENST00000679833.1:ENST00000681541.1:ENST00000681036.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	45	2	4.69191	4.89236	5.09281	0.0269474	0.00372534	0.123442	0.0561984
chr10	84148229	84148329	4477128	0	+	0.24	[0,0.28]	chr10	412144	1	SS3_PROX	SS3_PROX:INTRON	GHITM	ENSG00000165678.22	ENST00000691609.1:ENST00000372134.6:ENST00000690587.1:ENST00000686583.1:ENST00000690067.1:ENST00000691751.1:ENST00000687085.1:ENST00000692871.1:ENST00000691155.1:ENST00000690920.1:ENST00000688802.1:ENST00000686247.1:ENST00000690283.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	45	2	4.69191	4.89236	5.09281	0.0269474	0.00372534	0.123442	0.0561984
chr9	37823798	37823898	4121910	0	+	0.19	[0,0.28]	chr9	375756	40	INTRON	INTRON	DCAF10	ENSG00000122741.16	ENST00000242323.8:ENST00000377724.8:ENST00000461549.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	45	2	4.69191	4.89236	5.09281	0.0269474	0.00372534	0.123442	0.0561984
chr22	18548927	18549027	7550839	0	-	0.4	(0.378,0.408]	chr22	771822	1	SS3_PROX	SS3_PROX:INTRON	PI4KAP1	ENSG00000274602.5	ENST00000652586.1:ENST00000612500.4:ENST00000611748.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	2	113	2	3.49733	4.892094999999999	6.28686	6.46714e-5	1.69472e-5	0.00666922	0.00330681
chr14	64513648	64513746	5751604	0	+	0.397959	(0.378,0.408]	chr14	546357	19	INTRON	INTRON	ZBTB1	ENSG00000126804.14	ENST00000553583.1:ENST00000556965.1:ENST00000554015.5:ENST00000358738.3:ENST00000555321.1:ENST00000683701.1	protein_coding	protein_coding	protein_coding	protein_coding	0	42	2	4.60771	4.89199	5.17627	0.00567576	0.00208234	0.0678837	0.0411801
chr7	130050898	130050988	3638328	0	-	0.422222	(0.408,0.44]	chr7	338334	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ZC3HC1	ENSG00000091732.17	ENST00000311873.9:ENST00000358303.9:ENST00000360708.9:ENST00000467642.5:ENST00000648450.1:ENST00000481503.5:ENST00000471022.5:ENST00000483827.1:ENST00000480193.5:ENST00000470651.1:ENST00000484432.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	41	2	4.7041	4.891965000000001	5.07983	0.00381677	0.00247652	0.0562562	0.0446195
chr5	53600258	53600358	2352887	0	+	0.46	(0.44,0.476]	chr5	226995	262	INTRON	INTRON	NDUFS4	ENSG00000164258.12	ENST00000507026.5:ENST00000502423.5:ENST00000296684.10:ENST00000506974.5:ENST00000506765.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	44	2	4.23755	4.891305	5.54506	0.0263357	1.21665e-4	0.122221	0.00942499
chr1	77977288	77977387	494514	0	-	0.444444	(0.44,0.476]	chr1	58567	69	INTRON	INTRON	FUBP1	ENSG00000162613.17	ENST00000370768.7:ENST00000294623.8:ENST00000370767.5:ENST00000421641.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	42	2	4.53034	4.891064999999999	5.25179	0.00672609	0.00124521	0.0738715	0.0322969
chr7	121120239	121120339	3394961	0	+	0.37	(0.35,0.378]	chr7	317723	198	INTRON	INTRON	CPED1	ENSG00000106034.18	ENST00000310396.10:ENST00000428526.5:ENST00000450913.6:ENST00000423795.5:ENST00000443817.1	protein_coding	protein_coding	protein_coding	protein_coding	1	88	2	4.08897	4.89043	5.69189	3.71413e-4	5.3761e-5	0.0178698	0.00600135
chr3	31533786	31533886	1391405	0	+	0.6	(0.57,1]	chr3	145685	1	SS5_PROX	SS5_PROX:INTRON	STT3B	ENSG00000163527.10	ENST00000453168.5:ENST00000295770.4:ENST00000423527.5:ENST00000462235.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	56	2	4.05452	4.890255	5.72599	2.28989e-5	3.45794e-6	0.00373083	0.00131943
chr16	23509816	23509916	6464581	0	-	0.45	(0.44,0.476]	chr16	623901	1	SS5_PROX	SS5_PROX:INTRON	GGA2	ENSG00000103365.15	ENST00000309859.8:ENST00000567468.5:ENST00000570111.5:ENST00000568799.1:ENST00000563494.5:ENST00000569300.5:ENST00000569189.2:ENST00000563047.1:ENST00000562944.5:ENST00000562117.1:ENST00000566547.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	112	2	3.74489	4.89009	6.03529	4.06961e-5	1.37916e-5	0.00539487	0.00276767
chr7	128333462	128333562	3635152	0	-	0.52	(0.515,0.57]	chr7	337882	1	SS3_PROX	SS3_PROX:INTRON	RBM28	ENSG00000106344.8	ENST00000223073.6:ENST00000415472.6:ENST00000487602.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	41	2	4.399	4.88988	5.38076	0.00708863	3.24968e-4	0.0754923	0.0165891
chr3	33437535	33437635	1651684	0	-	0.28	[0,0.28]	chr3	169400	114	INTRON	INTRON	UBP1	ENSG00000153560.12	ENST00000283629.8:ENST00000447368.6:ENST00000283628.9:ENST00000456378.1:ENST00000496310.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	47	2	4.47254	4.88839	5.30424	0.020991	0.00584781	0.122348	0.0667594
chr1	28575118	28575218	57778	0	+	0.38	(0.378,0.408]	chr1	7504	4	SS5_PROX	SS5_PROX:INTRON	TRNAU1AP	ENSG00000180098.9	ENST00000373830.4:ENST00000480930.5:ENST00000491577.5:ENST00000484775.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	41	2	4.66338	4.8882650000000005	5.11315	0.0103469	9.26795e-4	0.0850389	0.0278442
chr1	243222608	243222706	668390	0	-	0.387755	(0.378,0.408]	chr1	79317	4	INTRON	INTRON	CEP170	ENSG00000143702.16	ENST00000366544.5:ENST00000366543.5:ENST00000366542.6:ENST00000522191.5:ENST00000523424.5:ENST00000522522.5:ENST00000522995.1:ENST00000523581.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	41	2	4.66338	4.8882650000000005	5.11315	0.0103469	9.26795e-4	0.0850389	0.0278442
chr7	105381249	105381349	3603829	0	-	0.4	(0.378,0.408]	chr7	336161	743	INTRON	INTRON	SRPK2	ENSG00000135250.17	ENST00000393651.8:ENST00000482897.5:ENST00000460391.5:ENST00000462282.5:ENST00000465112.5:ENST00000482862.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	41	2	4.66338	4.8882650000000005	5.11315	0.0103469	9.26795e-4	0.0850389	0.0278442
chr11	47815034	47815090	4951823	0	-	0.410714	(0.408,0.44]	chr11	464577	2	SS5_PROX	SS5_PROX:INTRON	NUP160	ENSG00000030066.14	ENST00000694866.1:ENST00000378460.7:ENST00000530326.5:ENST00000528071.5:ENST00000528501.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	42	2	4.53088	4.887945	5.24501	0.00669275	0.00137378	0.0738715	0.0336718
chr12	123335401	123335500	5444907	0	-	0.40404	(0.378,0.408]	chr12	521085	8	INTRON	INTRON	SBNO1	ENSG00000139697.14	ENST00000602398.3:ENST00000267176.8:ENST00000420886.6	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	4.77105	4.88782	5.00459	0.00371142	0.00330823	0.0535094	0.0527031
chr20	4687535	4687635	7228010	0	+	0.4	(0.378,0.408]	chr20	734591	4	INTRON	INTRON	PRNP	ENSG00000171867.18	ENST00000430350.2:ENST00000379440.9:ENST00000424424.2:ENST00000457586.2	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	4.77105	4.88782	5.00459	0.00371142	0.00330823	0.0535094	0.0527031
chr20	50957507	50957596	7356125	0	-	0.404494	(0.378,0.408]	chr20	750158	5	INTRON	INTRON	DPM1	ENSG00000000419.14	ENST00000371582.8:ENST00000466152.5:ENST00000683048.1:ENST00000371588.10:ENST00000371584.9:ENST00000683466.1:ENST00000681979.1:ENST00000684708.1:ENST00000413082.1:ENST00000682754.1:ENST00000684628.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	86	2	4.17973	4.887275000000001	5.59482	4.23783e-4	2.85856e-5	0.0189958	0.00423319
chr1	41229178	41229278	430699	0	-	0.32	(0.28,0.32]	chr1	52255	426	INTRON	INTRON	SCMH1	ENSG00000010803.17	ENST00000695335.1:ENST00000372596.5:ENST00000372597.5:ENST00000337495.9:ENST00000488592.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	154	2	3.29173	4.887035	6.48234	6.11276e-5	3.28303e-5	0.00646768	0.00483531
chr10	37856688	37856783	4602591	0	-	0.336842	(0.32,0.35]	chr10	423989	5	UTR5	UTR5:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ZNF248	ENSG00000198105.16	ENST00000615949.6:ENST00000485560.5:ENST00000395867.8:ENST00000357328.8:ENST00000611278.4:ENST00000374648.7:ENST00000395873.7:ENST00000395874.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	121	2	3.43629	4.8870000000000005	6.33771	1.14798e-4	3.28209e-5	0.00917224	0.00483531
chr19	23771625	23771725	7042515	0	+	0.42	(0.408,0.44]	chr19	702194	81	INTRON	INTRON	RPSAP58	ENSG00000288920.1	ENST00000471224.5:ENST00000692590.1:ENST00000475499.2:ENST00000686829.1:ENST00000689525.1:ENST00000691397.1:ENST00000688405.1:ENST00000692739.1:ENST00000687994.1:ENST00000484897.4:ENST00000685013.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	44	2	4.334	4.886699999999999	5.4394	0.011982	6.50925e-4	0.0962115	0.0232863
chr15	63615567	63615667	6198614	0	-	0.35	(0.32,0.35]	chr15	591001	4	SS5_PROX	SS5_PROX:INTRON	HERC1	ENSG00000103657.14	ENST00000443617.7	protein_coding	protein_coding	protein_coding	protein_coding	0	43	2	4.53988	4.886575000000001	5.23327	0.0202178	9.33826e-4	0.109913	0.0278746
chr10	48417357	48417457	4432103	0	+	0.33	(0.32,0.35]	chr10	408600	68	INTRON	INTRON	MAPK8	ENSG00000107643.17	ENST00000395611.7:ENST00000374189.6:ENST00000429041.6:ENST00000374179.8:ENST00000360332.7:ENST00000374182.7:ENST00000374176.8:ENST00000374174.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	43	2	4.64046	4.885845	5.13123	0.00724767	0.00394704	0.0756327	0.0548259
chr10	69381886	69381986	4446520	0	+	0.37	(0.35,0.378]	chr10	410277	14	INTRON	INTRON	HK1	ENSG00000156515.24	ENST00000436817.6:ENST00000360289.6:ENST00000448642.6:ENST00000643399.2:ENST00000298649.8:ENST00000359426.7:ENST00000493591.6:ENST00000494253.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	42	2	4.66929	4.885775000000001	5.10226	0.00541617	0.00327038	0.066545000000000007	0.0508595
chr3	101371307	101371407	1757151	0	-	0.36	(0.35,0.378]	chr3	178305	29	INTRON	INTRON	SENP7	ENSG00000138468.16	ENST00000394095.7:ENST00000314261.11:ENST00000394094.6:ENST00000394091.5:ENST00000348610.3	protein_coding	protein_coding	protein_coding	protein_coding	0	42	2	4.66929	4.885775000000001	5.10226	0.00541617	0.00327038	0.066545000000000007	0.0508595
chr20	62134348	62134441	7297471	0	+	0.365591	(0.35,0.378]	chr20	742239	3	UTR3	UTR3:EXON_MRNA	LSM14B	ENSG00000149657.20	ENST00000279068.11	protein_coding	protein_coding	protein_coding	protein_coding	2	116	2	3.45464	4.8856399999999995	6.31664	9.07166e-5	2.12364e-5	0.00796627	0.00377197
chr4	73241693	73241792	2160656	0	-	0.171717	[0,0.28]	chr4	212799	187	INTRON	INTRON	ANKRD17	ENSG00000132466.20	ENST00000358602.9:ENST00000558247.5:ENST00000330838.10:ENST00000561029.1	protein_coding	protein_coding	protein_coding	protein_coding	0	45	2	4.62084	4.884305	5.14777	0.0313633	0.00311898	0.13151	0.0512673
chr10	38042477	38042577	4427216	0	+	0.21	[0,0.28]	chr10	408004	247	INTRON	INTRON	ZNF33A	ENSG00000189180.16	ENST00000307441.13:ENST00000374618.7:ENST00000628825.2:ENST00000458705.6:ENST00000432900.7:ENST00000469037.2:ENST00000478556.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	46	2	4.46726	4.88418	5.3011	0.0427997	0.00185843	0.148082	0.039946
chr1	108948585	108948676	519025	0	-	0.296703	(0.28,0.32]	chr1	60913	5	INTRON	INTRON	CLCC1	ENSG00000121940.17	ENST00000690509.1:ENST00000687328.1:ENST00000685014.1:ENST00000685540.1:ENST00000686576.1:ENST00000688070.1:ENST00000691513.1:ENST00000686821.1:ENST00000692511.1:ENST00000689479.1:ENST00000687646.1:ENST00000687998.1:ENST00000687226.1:ENST00000693336.1:ENST00000689991.1:ENST00000687591.1:ENST00000691777.1:ENST00000690756.1:ENST00000688778.1:ENST00000685104.1:ENST00000689103.1:ENST00000687734.1:ENST00000686434.1:ENST00000685497.1:ENST00000691342.1:ENST00000686776.1:ENST00000692342.1:ENST00000689351.1:ENST00000692584.1:ENST00000692775.1:ENST00000687134.1:ENST00000675018.1:ENST00000690781.1:ENST00000691556.1:ENST00000689189.1:ENST00000687099.1:ENST00000685791.1:ENST00000687865.1:ENST00000687449.1:ENST00000688285.1:ENST00000686817.1:ENST00000369968.7:ENST00000674992.1:ENST00000675001.1:ENST00000369969.7:ENST00000356970.6:ENST00000688610.1:ENST00000675128.1:ENST00000693089.1:ENST00000675571.1:ENST00000675650.1:ENST00000369970.8:ENST00000674561.2:ENST00000675451.1:ENST00000675654.1:ENST00000675790.1:ENST00000675584.1:ENST00000692795.1:ENST00000691731.1:ENST00000689359.1:ENST00000676392.2:ENST00000676391.2:ENST00000676454.1:ENST00000674849.1:ENST00000675956.1:ENST00000302500.5:ENST00000675508.1:ENST00000688168.1:ENST00000693673.1:ENST00000692404.1:ENST00000686078.1:ENST00000690874.1:ENST00000692732.1:ENST00000685628.1:ENST00000676306.1:ENST00000348264.6:ENST00000675247.2:ENST00000676059.2:ENST00000674527.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	97	2	4.13339	4.8841149999999995	5.63484	0.00108324	6.24069e-5	0.0303015	0.00657207
chr10	7288953	7289053	4551712	0	-	0.49	(0.476,0.515]	chr10	420230	26	INTRON	INTRON	SFMBT2	ENSG00000198879.13	ENST00000397167.6:ENST00000361972.8:ENST00000684547.1:ENST00000683762.1:ENST00000673876.1:ENST00000682896.1:ENST00000379713.8:ENST00000682101.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	84	2	3.66565	4.88396	6.10227	4.18031e-4	2.54722e-5	0.0182827	0.00416607
chr5	72220486	72220585	2639784	0	-	0.424242	(0.408,0.44]	chr5	250886	57	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MRPS27	ENSG00000113048.18	ENST00000694990.1:ENST00000694989.1:ENST00000522042.2:ENST00000694988.1:ENST00000261413.10:ENST00000513900.6:ENST00000695403.1:ENST00000523654.6:ENST00000694998.1:ENST00000694997.1:ENST00000695298.1:ENST00000694996.1:ENST00000694995.1:ENST00000519143.6:ENST00000694994.1:ENST00000695297.1:ENST00000695296.1:ENST00000694993.1:ENST00000694992.1:ENST00000694991.1:ENST00000694999.1:ENST00000457646.9:ENST00000515226.5:ENST00000695404.1:ENST00000519874.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	85	2	3.59564	4.883895	6.17215	5.73354e-4	2.28416e-5	0.0217398	0.00389868
chr15	100572450	100572546	6268724	0	-	0.21875	[0,0.28]	chr15	597865	5	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	LINS1	ENSG00000140471.17	ENST00000560783.1:ENST00000314742.13:ENST00000559169.1:ENST00000559149.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	45	2	4.71017	4.883825	5.05748	0.0114708	0.0113653	0.0956037	0.0886611
chr19	14167030	14167130	7144026	0	-	0.27	[0,0.28]	chr19	721308	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	ADGRL1	ENSG00000072071.17	ENST00000340736.10:ENST00000361434.8:ENST00000591528.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	45	2	4.71017	4.883825	5.05748	0.0114708	0.0113653	0.0956037	0.0886611
chr16	81510590	81510690	6405657	0	+	0.35	(0.32,0.35]	chr16	615031	147	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6	protein_coding	protein_coding	protein_coding	protein_coding	0	42	2	4.83287	4.883559999999999	4.93425	0.0095071	0.00281048	0.0817766	0.0488779
chr18	79265662	79265762	6935984	0	+	0.29	(0.28,0.32]	chr18	685923	105	INTRON	INTRON	ATP9B	ENSG00000166377.21	ENST00000426216.6:ENST00000307671.12:ENST00000590271.5:ENST00000490210.6:ENST00000585674.1:ENST00000587878.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	43	2	4.80255	4.883545	4.96454	0.0137406	0.00344078	0.0949306	0.0539802
chr1	63453689	63453765	470983	0	-	0.289474	(0.28,0.32]	chr1	56958	2	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	ITGB3BP	ENSG00000142856.17	ENST00000271002.15:ENST00000489099.5:ENST00000371092.7:ENST00000461681.5:ENST00000463803.5:ENST00000476508.5:ENST00000460394.5:ENST00000462285.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	43	2	4.86731	4.883464999999999	4.89962	0.0116253	0.00425206	0.0889104	0.0595557
chr19	1431053	1431149	6995341	0	+	0.302083	(0.28,0.32]	chr19	693220	3	INTRON	INTRON	DAZAP1	ENSG00000071626.17	ENST00000336761.10:ENST00000233078.9:ENST00000592522.5:ENST00000587079.5:ENST00000592453.2:ENST00000589484.5:ENST00000585485.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	43	2	4.86731	4.883464999999999	4.89962	0.0116253	0.00425206	0.0889104	0.0595557
chr2	32374997	32375097	730958	0	+	0.29	(0.28,0.32]	chr2	84274	172	INTRON	INTRON	BIRC6	ENSG00000115760.15	ENST00000421745.7:ENST00000648282.1	protein_coding	protein_coding	protein_coding	protein_coding	0	43	2	4.86731	4.883464999999999	4.89962	0.0116253	0.00425206	0.0889104	0.0595557
chr6	85624711	85624811	3151264	0	-	0.32	(0.28,0.32]	chr6	293889	2	INTRON	INTRON	ENSG00000271793:SYNCRIP	ENSG00000271793.2:ENSG00000135316.19	ENST00000682083.1:ENST00000683074.1:ENST00000681965.1:ENST00000682504.1:ENST00000682106.1:ENST00000683364.1:ENST00000683436.1:ENST00000684220.1:ENST00000683909.1:ENST00000684462.1:ENST00000616122.5:ENST00000678528.1:ENST00000676637.1:ENST00000677771.1:ENST00000355238.11:ENST00000678878.1:ENST00000677481.1:ENST00000677646.1:ENST00000676630.1:ENST00000678618.1:ENST00000676542.1:ENST00000677059.1:ENST00000444272.2:ENST00000678899.1:ENST00000369622.8:ENST00000678355.1:ENST00000676688.1:ENST00000677514.1:ENST00000678816.1:ENST00000678930.1:ENST00000678589.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	43	2	4.86731	4.883464999999999	4.89962	0.0116253	0.00425206	0.0889104	0.0595557
chr18	700031	700130	6939652	0	-	0.484848	(0.476,0.515]	chr18	686437	23	INTRON	INTRON	ENOSF1	ENSG00000132199.20	ENST00000647584.2:ENST00000383578.7:ENST00000340116.12:ENST00000581475.5:ENST00000580982.5:ENST00000585128.6:ENST00000584453.5:ENST00000578651.5:ENST00000585004.5:ENST00000579053.5:ENST00000583771.1:ENST00000580605.5:ENST00000581332.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	41	2	4.61519	4.88331	5.15143	0.00528365	0.00166579	0.0656295	0.0369207
chr5	456388	456488	2313201	0	+	0.59	(0.57,1]	chr5	223772	1	SS3_PROX	SS3_PROX:INTRON	EXOC3	ENSG00000180104.16	ENST00000512944.6:ENST00000515601.6:ENST00000315013.9:ENST00000503889.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	32	2	4.56365	4.882899999999999	5.20215	0.00129848	8.28896e-5	0.0333764	0.00812487
chr1	21755559	21755656	396589	0	-	0.28866000000000003	(0.28,0.32]	chr1	47332	21	INTRON	INTRON	USP48	ENSG00000090686.16	ENST00000400301.5:ENST00000308271.14:ENST00000529637.5:ENST00000421625.6:ENST00000527823.5:ENST00000532737.1	protein_coding	protein_coding	protein_coding	protein_coding	2	130	2	3.71324	4.88258	6.05192	2.17456e-4	3.06557e-5	0.0135077	0.00441979
chr12	55809502	55809601	5332749	0	-	0.50505	(0.476,0.515]	chr12	509170	54	INTRON	INTRON	SARNP	ENSG00000205323.9	ENST00000546604.5:ENST00000552884.5:ENST00000336133.8:ENST00000552080.1:ENST00000552207.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	40	2	4.83962	4.882455	4.92529	0.00480934	0.00180221	0.0602209	0.0392772
chr17	45025923	45026023	6616996	0	+	0.49	(0.476,0.515]	chr17	645285	675	INTRON	INTRON	NMT1	ENSG00000136448.13	ENST00000678938.1	protein_coding	protein_coding	protein_coding	protein_coding	0	40	2	4.83962	4.882455	4.92529	0.00480934	0.00180221	0.0602209	0.0392772
chr1	65557658	65557758	138562	0	+	0.45	(0.44,0.476]	chr1	15499	315	INTRON	INTRON	LEPR	ENSG00000116678.20	ENST00000371060.7:ENST00000371059.7:ENST00000349533.11:ENST00000616738.4:ENST00000344610.12:ENST00000462765.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	41	2	4.5227	4.882405	5.24211	0.0128818	4.87398e-4	0.0926667	0.0199652
chr11	77705829	77705929	4994819	0	-	0.34	(0.32,0.35]	chr11	472017	24	INTRON	INTRON	RSF1	ENSG00000048649.14	ENST00000308488.11:ENST00000526324.5:ENST00000528095.5:ENST00000534794.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	42	2	4.76501	4.882115000000001	4.99922	0.0114287	0.00223907	0.0886611	0.0435144
chr18	36137074	36137173	6891489	0	+	0.343434	(0.32,0.35]	chr18	682965	3	INTRON	INTRON	ELP2	ENSG00000134759.14	ENST00000543127.5:ENST00000544267.5:ENST00000351393.10:ENST00000545632.5:ENST00000442325.6:ENST00000358232.11:ENST00000423854.6:ENST00000539560.5:ENST00000535488.5:ENST00000540135.5:ENST00000542430.5:ENST00000350494.10:ENST00000542824.5:ENST00000540799.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	42	2	4.76501	4.882115000000001	4.99922	0.0114287	0.00223907	0.0886611	0.0435144
chr3	14975386	14975486	1372059	0	+	0.33	(0.32,0.35]	chr3	144608	125	INTRON	INTRON	NR2C2	ENSG00000177463.16	ENST00000425241.6:ENST00000413118.5:ENST00000435454.5:ENST00000323373.10:ENST00000475707.5:ENST00000393102.7:ENST00000437120.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	42	2	4.76501	4.882115000000001	4.99922	0.0114287	0.00223907	0.0886611	0.0435144
chr8	94860643	94860742	3800509	0	+	0.343434	(0.32,0.35]	chr8	352417	4	INTRON	INTRON	INTS8	ENSG00000164941.14	ENST00000523731.6:ENST00000524333.5:ENST00000343161.8:ENST00000523206.5:ENST00000520526.5:ENST00000520845.5:ENST00000520315.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	42	2	4.76501	4.882115000000001	4.99922	0.0114287	0.00223907	0.0886611	0.0435144
chr4	67652101	67652200	2153962	0	-	0.272727	[0,0.28]	chr4	212133	25	INTRON	INTRON	UBA6	ENSG00000033178.13	ENST00000322244.10	protein_coding	protein_coding	protein_coding	protein_coding	1	102	2	3.75586	4.881965	6.00807	6.0063e-4	5.203e-4	0.0226059	0.0204523
chr10	73447668	73447767	4649657	0	-	0.323232	(0.32,0.35]	chr10	427870	7	INTRON	INTRON	PPP3CB	ENSG00000107758.16	ENST00000360663.10:ENST00000394828.6:ENST00000394829.6:ENST00000430762.6:ENST00000342558.3	protein_coding	protein_coding	protein_coding	protein_coding	0	42	2	4.86622	4.88195	4.89768	0.00793135	0.00354075	0.076155	0.0546236
chr13	79545659	79545758	5516609	0	+	0.343434	(0.32,0.35]	chr13	527539	16	INTRON	INTRON	NDFIP2	ENSG00000102471.15	ENST00000612570.4:ENST00000218652.12:ENST00000650134.1:ENST00000487865.5:ENST00000465762.5:ENST00000620924.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	42	2	4.86622	4.88195	4.89768	0.00793135	0.00354075	0.076155	0.0546236
chr5	179721047	179721145	2560927	0	+	0.510204	(0.476,0.515]	chr5	244936	6	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	CANX	ENSG00000127022.16	ENST00000681674.1:ENST00000681712.1:ENST00000681903.1:ENST00000680406.1:ENST00000502296.6:ENST00000504734.5:ENST00000452673.6:ENST00000679719.1:ENST00000679523.1:ENST00000679395.1:ENST00000681504.1:ENST00000679642.1:ENST00000681894.1:ENST00000680504.1:ENST00000681265.1:ENST00000680894.1:ENST00000680812.1:ENST00000680614.1:ENST00000680985.1:ENST00000680837.1:ENST00000680827.1:ENST00000681576.1:ENST00000680984.1:ENST00000680042.1:ENST00000681762.1:ENST00000681476.1:ENST00000681072.1:ENST00000247461.9:ENST00000513246.6:ENST00000680618.1:ENST00000502673.6:ENST00000680092.1:ENST00000506654.6:ENST00000514032.5:ENST00000681733.1:ENST00000679471.1:ENST00000679527.1:ENST00000680006.1:ENST00000681398.1:ENST00000681431.1:ENST00000680013.1:ENST00000681076.1:ENST00000681168.1:ENST00000509563.2:ENST00000681342.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	83	2	4.02209	4.88182	5.74155	1.47804e-4	6.68973e-5	0.0111067	0.00677892
chr2	167914152	167914251	1258944	0	-	0.525253	(0.515,0.57]	chr2	133340	130	INTRON	INTRON	B3GALT1-AS1	ENSG00000235335.3	ENST00000430546.2:ENST00000657553.1:ENST00000670221.1:ENST00000436982.2	lncRNA	lncRNA	lncRNA	lncRNA	0	38	2	4.83764	4.881185	4.92473	0.00279527	0.00108255	0.0469265	0.0300133
chr16	16042758	16042857	6308696	0	+	0.363636	(0.35,0.378]	chr16	603546	58	INTRON	INTRON	ABCC1	ENSG00000103222.20	ENST00000574224.2:ENST00000678422.1:ENST00000677164.1:ENST00000399408.7:ENST00000572882.3:ENST00000399410.8:ENST00000679043.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	44	2	4.29839	4.881165	5.46394	0.0294717	2.60035e-4	0.128055	0.014326
chr5	173087822	173087922	2549010	0	+	0.55	(0.515,0.57]	chr5	243334	8	INTRON	INTRON	CREBRF	ENSG00000164463.12	ENST00000296953.6:ENST00000522692.5:ENST00000520420.5:ENST00000520464.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	39	2	4.51	4.880915	5.25183	0.00809449	2.6074e-4	0.0766625	0.014326
chr6	43227187	43227284	3096022	0	-	0.484536	(0.476,0.515]	chr6	289833	4	INTRON	INTRON	DNPH1	ENSG00000112667.13	ENST00000230431.11:ENST00000509253.5:ENST00000393987.2	protein_coding	protein_coding	protein_coding	protein_coding	0	45	2	4.21964	4.88087	5.5421	0.0167715	3.56777e-4	0.110511	0.0175154
chr20	345904	346004	7302802	0	-	0.45	(0.44,0.476]	chr20	743423	208	INTRON	INTRON	NRSN2-AS1	ENSG00000225377.6	ENST00000442637.2:ENST00000662580.1	lncRNA	lncRNA	lncRNA	lncRNA	0	40	2	4.83202	4.880850000000001	4.92968	0.00525002	0.00171443	0.0633615	0.0381936
chr13	95681435	95681535	5517238	0	+	0.49	(0.476,0.515]	chr13	527643	37	INTRON	INTRON	DNAJC3	ENSG00000102580.15	ENST00000602402.6:ENST00000376795.6	protein_coding	protein_coding	protein_coding	protein_coding	0	40	2	4.76827	4.880845000000001	4.99342	0.00600704	0.00139274	0.0674604	0.0341261
chr22	39952147	39952246	7516619	0	+	0.484848	(0.476,0.515]	chr22	768030	38	INTRON	INTRON	GRAP2	ENSG00000100351.17	ENST00000344138.9:ENST00000420971.5:ENST00000478445.1:ENST00000407075.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	40	2	4.76827	4.880845000000001	4.99342	0.00600704	0.00139274	0.0674604	0.0341261
chr3	128643740	128643838	1813939	0	-	0.489796	(0.476,0.515]	chr3	182322	13	INTRON	INTRON	RPN1	ENSG00000163902.12	ENST00000296255.8:ENST00000497289.5:ENST00000495462.5:ENST00000476931.1:ENST00000497415.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	40	2	4.76827	4.880845000000001	4.99342	0.00600704	0.00139274	0.0674604	0.0341261
chr5	72850804	72850904	2387467	0	+	0.21	[0,0.28]	chr5	230366	2	SS3_PROX	SS3_PROX:INTRON	TNPO1	ENSG00000083312.19	ENST00000680533.1:ENST00000515483.5:ENST00000520850.5:ENST00000337273.10:ENST00000680025.1:ENST00000523768.5:ENST00000681711.1:ENST00000518279.5:ENST00000679378.1:ENST00000513944.5:ENST00000506351.6:ENST00000506528.5:ENST00000511754.5:ENST00000509030.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	103	2	3.54621	4.88073	6.21525	0.00124865	2.75841e-4	0.0328543	0.0152235
chr1	179222743	179222843	593010	0	-	0.31	(0.28,0.32]	chr1	71074	798	INTRON	INTRON	ABL2	ENSG00000143322.21	ENST00000502732.6:ENST00000367623.8:ENST00000507173.5:ENST00000511413.5:ENST00000668691.1:ENST00000392043.4:ENST00000660584.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	43	2	4.73474	4.8807	5.02666	0.0162835	0.0027935	0.101453	0.0488769
chr6	161016111	161016211	3024734	0	+	0.3	(0.28,0.32]	chr6	282304	237	INTRON	INTRON	MAP3K4	ENSG00000085511.20	ENST00000366919.6:ENST00000392142.9:ENST00000542952.5:ENST00000366920.6:ENST00000348824.11:ENST00000544041.5:ENST00000490904.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	43	2	4.73474	4.8807	5.02666	0.0162835	0.0027935	0.101453	0.0488769
chrX	107127720	107127820	7859696	0	-	0.29	(0.28,0.32]	chrX	801266	30	INTRON	INTRON	NUP62CL	ENSG00000198088.10	ENST00000372466.8:ENST00000484614.5:ENST00000432145.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	43	2	4.73474	4.8807	5.02666	0.0162835	0.0027935	0.101453	0.0488769
chr9	111930375	111930474	4184797	0	+	0.30303	(0.28,0.32]	chr9	381721	3	INTRON	INTRON	UGCG	ENSG00000148154.10	ENST00000374279.4:ENST00000474306.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	44	2	4.50981	4.88061	5.25141	0.0275554	0.00125199	0.123904	0.0328543
chr10	14879899	14879983	4397091	0	+	0.297619	(0.28,0.32]	chr10	405951	2	UTR5	UTR5:EXON_MRNA:INTRON	SUV39H2	ENSG00000152455.16	ENST00000378331.5:ENST00000433779.5:ENST00000378325.7:ENST00000354919.11:ENST00000313519.9:ENST00000420416.1:ENST00000412254.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	43	2	4.83165	4.88047	4.92929	0.0098607	0.00527257	0.0838128	0.0656295
chr6	24778585	24778683	2836497	0	+	0.265306	[0,0.28]	chr6	265897	9	INTRON	INTRON	GMNN	ENSG00000112312.10	ENST00000356509.7:ENST00000230056.8:ENST00000620958.4:ENST00000378054.6:ENST00000476555.5:ENST00000378059.3	protein_coding	protein_coding	protein_coding	protein_coding	2	138	2	3.47402	4.8799399999999995	6.28586	2.0925e-4	1.56484e-4	0.0131276	0.0107129
chr8	42530177	42530277	3942464	0	-	0.3	(0.28,0.32]	chr8	361320	277	INTRON	INTRON	SLC20A2	ENSG00000168575.10	ENST00000342228.7:ENST00000520179.5:ENST00000524211.1:ENST00000518717.1:ENST00000518384.1:ENST00000524237.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	44	2	4.6061	4.87984	5.15358	0.0102724	0.0052282	0.089002	0.0633615
chr16	71909638	71909737	6386748	0	+	0.292929	(0.28,0.32]	chr16	614084	56	INTRON	INTRON	IST1	ENSG00000182149.21	ENST00000568581.5:ENST00000540296.5:ENST00000544564.5:ENST00000541571.6:ENST00000538104.5:ENST00000535424.5:ENST00000606369.5:ENST00000537613.5:ENST00000424485.6:ENST00000566536.5:ENST00000378799.11:ENST00000538565.5:ENST00000329908.12:ENST00000538850.5:ENST00000541918.5:ENST00000378798.9:ENST00000534994.5:ENST00000539186.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	48	2	4.14214	4.879635	5.61713	0.0579756	2.86819e-4	0.167723	0.0150568
chr3	12577241	12577340	1368087	0	+	0.424242	(0.408,0.44]	chr3	144101	1	INTRON	INTRON	MKRN2	ENSG00000075975.17	ENST00000677816.1:ENST00000677941.1:ENST00000676544.1:ENST00000677237.1:ENST00000679143.1:ENST00000676701.1:ENST00000170447.12:ENST00000411987.5:ENST00000448482.1:ENST00000677142.1:ENST00000676541.1:ENST00000677798.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	41	2	4.51604	4.879355	5.24267	0.0137419	4.83767e-4	0.0949306	0.0199261
chr17	21014008	21014104	6742868	0	-	0.479167	(0.476,0.515]	chr17	662034	7	INTRON	INTRON	USP22	ENSG00000124422.12	ENST00000261497.9:ENST00000537526.6:ENST00000455117.6:ENST00000579645.5:ENST00000582335.1:ENST00000577610.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	110	2	3.44103	4.879265	6.3175	8.64735e-5	8.0696e-6	0.00783027	0.00214775
chr21	45124927	45125026	7418360	0	+	0.444444	(0.44,0.476]	chr21	756281	36	INTRON	INTRON	ADARB1	ENSG00000197381.17	ENST00000462214.5:ENST00000460734.5:ENST00000348831.9:ENST00000389861.7:ENST00000389863.8:ENST00000492414.5:ENST00000496664.5:ENST00000437626.5:ENST00000449478.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	40	2	4.76068	4.87925	4.99782	0.00653414	0.0013223	0.0699952	0.0333932
chr10	87517967	87518066	4482552	0	+	0.525253	(0.515,0.57]	chr10	412510	44	INTRON	INTRON	MINPP1	ENSG00000107789.16	ENST00000371994.8:ENST00000371996.9:ENST00000536010.1	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.84936	4.879239999999999	4.90912	0.0021669	0.00146032	0.0417866	0.0349875
chr5	31505433	31505533	2596736	0	-	0.46	(0.44,0.476]	chr5	246668	4	INTRON	INTRON	DROSHA	ENSG00000113360.17	ENST00000344624.8:ENST00000511367.6:ENST00000513349.5:ENST00000512076.1	protein_coding	protein_coding	protein_coding	protein_coding	0	40	2	4.85817	4.879085	4.9	0.00423315	0.00223254	0.0572185	0.0435144
chr6	35364631	35364731	2852199	0	+	0.47	(0.44,0.476]	chr6	269491	171	INTRON	INTRON	PPARD	ENSG00000112033.14	ENST00000418635.6:ENST00000448077.6:ENST00000360694.8:ENST00000311565.4:ENST00000337400.6	protein_coding	protein_coding	protein_coding	protein_coding	2	111	2	3.72275	4.87902	6.03529	4.06961e-5	1.58448e-5	0.00539487	0.00300937
chr22	39421626	39421726	7515332	0	+	0.41	(0.408,0.44]	chr22	767874	4	SS3_PROX	SS3_PROX:INTRON	TAB1	ENSG00000100324.14	ENST00000216160.11:ENST00000331454.3	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	4.62009	4.878555	5.13702	0.00504155	0.00202889	0.0646039	0.04086
chr6	136786314	136786414	3235580	0	-	0.41	(0.408,0.44]	chr6	300700	654	INTRON	INTRON	MAP3K5	ENSG00000197442.10	ENST00000359015.5	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	4.62009	4.878555	5.13702	0.00504155	0.00202889	0.0646039	0.04086
chr8	1782043	1782141	3691168	0	+	0.397959	(0.378,0.408]	chr8	342602	16	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	CLN8	ENSG00000182372.10	ENST00000331222.6:ENST00000636934.1:ENST00000635970.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	41	2	4.58427	4.87854	5.17281	0.0128325	7.27294e-4	0.0926667	0.0245647
chr3	19966648	19966747	1376231	0	+	0.383838	(0.378,0.408]	chr3	145051	134	INTRON	INTRON	RAB5A	ENSG00000144566.11	ENST00000273047.9:ENST00000412966.5:ENST00000446547.5:ENST00000422242.1:ENST00000469122.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	43	2	4.31699	4.877955	5.43892	0.0250408	2.28412e-4	0.12011	0.0133228
chr10	35420933	35421033	4425348	0	+	0.41	(0.408,0.44]	chr10	407905	257	INTRON	INTRON	CCNY	ENSG00000108100.18	ENST00000374706.5:ENST00000490012.6:ENST00000493157.6:ENST00000374704.8:ENST00000265375.13:ENST00000339497.7:ENST00000492478.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	40	2	4.8253	4.87777	4.93024	0.0056738	0.00170369	0.0653997	0.0381936
chr15	55265192	55265292	6180657	0	-	0.44	(0.408,0.44]	chr15	589160	48	INTRON	INTRON	RAB27A	ENSG00000069974.16	ENST00000336787.6:ENST00000396307.6:ENST00000564609.5:ENST00000569493.5:ENST00000567380.5:ENST00000565972.5:ENST00000563262.5:ENST00000568803.1:ENST00000567639.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	40	2	4.8253	4.87777	4.93024	0.0056738	0.00170369	0.0653997	0.0381936
chr16	75379975	75380054	6528756	0	-	0.43038	(0.408,0.44]	chr16	632310	3	EXON_LNCRNA	EXON_LNCRNA:INTRON	CFDP1:ENSG00000261783	ENSG00000153774.9:ENSG00000261783.1	ENST00000283882.4:ENST00000612761.1:ENST00000569341.1:ENST00000561956.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:nonsense_mediated_decay:lncRNA	0	40	2	4.8253	4.87777	4.93024	0.0056738	0.00170369	0.0653997	0.0381936
chr17	44149227	44149327	6615544	0	+	0.41	(0.408,0.44]	chr17	645085	2	SS5_PROX	SS5_PROX:INTRON	HROB	ENSG00000125319.15	ENST00000319977.8:ENST00000585683.6:ENST00000245382.6:ENST00000588434.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	40	2	4.8253	4.87777	4.93024	0.0056738	0.00170369	0.0653997	0.0381936
chr20	56441544	56441643	7287748	0	+	0.414141	(0.408,0.44]	chr20	741432	36	INTRON	INTRON	CASS4	ENSG00000087589.17	ENST00000360314.7:ENST00000679887.1:ENST00000434344.2:ENST00000497244.1:ENST00000679529.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	40	2	4.8253	4.87777	4.93024	0.0056738	0.00170369	0.0653997	0.0381936
chr3	11842648	11842746	1616046	0	-	0.438776	(0.408,0.44]	chr3	166812	30	INTRON	INTRON	TAMM41	ENSG00000144559.11	ENST00000273037.9:ENST00000455809.6:ENST00000457498.5:ENST00000444133.6:ENST00000411947.1:ENST00000417723.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	40	2	4.8253	4.87777	4.93024	0.0056738	0.00170369	0.0653997	0.0381936
chr7	75717966	75718066	3561041	0	-	0.44	(0.408,0.44]	chr7	331784	629	INTRON	INTRON	HIP1	ENSG00000127946.17	ENST00000336926.11:ENST00000434438.6:ENST00000485723.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	40	2	4.8253	4.87777	4.93024	0.0056738	0.00170369	0.0653997	0.0381936
chr9	93467847	93467947	4158207	0	+	0.43	(0.408,0.44]	chr9	379127	151	INTRON	INTRON	FAM120A	ENSG00000048828.17	ENST00000277165.11:ENST00000375389.7:ENST00000446420.2	protein_coding	protein_coding	protein_coding	protein_coding	0	40	2	4.8253	4.87777	4.93024	0.0056738	0.00170369	0.0653997	0.0381936
chr3	172160861	172160961	1560763	0	+	0.25	[0,0.28]	chr3	161551	119	INTRON	INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000421757.5:ENST00000469491.5:ENST00000336824.8:ENST00000423424.5:ENST00000416957.5:ENST00000478016.1:ENST00000443501.1:ENST00000476794.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	104	2	4.0567	4.87768	5.69866	0.00175225	1.31789e-4	0.0376491	0.00990153
chr17	16044962	16045061	6733470	0	-	0.333333	(0.32,0.35]	chr17	660500	41	INTRON	INTRON	NCOR1	ENSG00000141027.22	ENST00000268712.8:ENST00000395851.5:ENST00000470782.5:ENST00000464381.5:ENST00000395849.6:ENST00000579573.2:ENST00000580554.1:ENST00000579606.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	42	2	4.6938	4.877595	5.06139	0.0137794	0.00179023	0.0949306	0.0392749
chr7	127811867	127811967	3404009	0	+	0.34	(0.32,0.35]	chr7	318140	39	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000468166.5:ENST00000465900.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	42	2	4.6938	4.877595	5.06139	0.0137794	0.00179023	0.0949306	0.0392749
chr20	49705278	49705378	7353542	0	-	0.31	(0.28,0.32]	chr20	749846	482	INTRON	INTRON	B4GALT5	ENSG00000158470.5	ENST00000371711.4	protein_coding	protein_coding	protein_coding	protein_coding	2	127	2	3.5199	4.877375	6.23485	1.00183e-4	8.86821e-5	0.00904854	0.00792076
chr10	63286936	63287036	4633599	0	-	0.37	(0.35,0.378]	chr10	426226	178	INTRON	INTRON	JMJD1C	ENSG00000171988.20	ENST00000399262.7:ENST00000633035.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	41	2	4.79079	4.877045000000001	4.9633	0.00846427	0.00198929	0.0776969	0.0411469
chr17	66379317	66379417	6663065	0	+	0.37	(0.35,0.378]	chr17	650326	151	INTRON	INTRON	PRKCA	ENSG00000154229.12	ENST00000413366.8:ENST00000578063.5:ENST00000284384.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	41	2	4.8587	4.876965	4.89523	0.00695662	0.00253947	0.0718189	0.0465056
chr7	157374225	157374325	3455687	0	+	0.47	(0.44,0.476]	chr7	323102	21	INTRON	INTRON	DNAJB6	ENSG00000105993.15	ENST00000441561.5:ENST00000429029.6:ENST00000262177.9:ENST00000417758.5:ENST00000459889.5:ENST00000443280.5:ENST00000441291.5:ENST00000412557.5:ENST00000634080.1:ENST00000468928.5:ENST00000465908.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	83	2	4.09568	4.876505	5.65733	2.3957e-4	4.34828e-5	0.0142132	0.00532088
chr11	64217666	64217764	4802360	0	+	0.520408	(0.515,0.57]	chr11	445346	56	INTRON	INTRON	FERMT3	ENSG00000149781.13	ENST00000544997.5:ENST00000345728.10:ENST00000279227.9:ENST00000541326.5:ENST00000546255.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	80	2	4.00925	4.876205	5.74316	7.7342e-5	2.06122e-5	0.00784644	0.00352433
chr21	28977327	28977427	7436537	0	-	0.41	(0.408,0.44]	chr21	758418	55	INTRON	INTRON	LTN1	ENSG00000198862.14	ENST00000614971.4:ENST00000389194.7:ENST00000361371.10:ENST00000389195.7:ENST00000483326.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	40	2	4.75398	4.876175	4.99837	0.00703931	0.00131369	0.0718189	0.0333932
chr5	140403271	140403371	2502840	0	+	0.43	(0.408,0.44]	chr5	239166	6	INTRON	INTRON	ANKHD1	ENSG00000131503.21	ENST00000297183.10:ENST00000616482.4:ENST00000360839.7:ENST00000421134.5:ENST00000394723.7:ENST00000511151.5:ENST00000394722.7	protein_coding	protein_coding	protein_coding	protein_coding	0	40	2	4.75398	4.876175	4.99837	0.00703931	0.00131369	0.0718189	0.0333932
chr6	12008761	12008818	2814183	0	+	0.438596	(0.408,0.44]	chr6	264767	1	UTR5	UTR5:EXON_MRNA	HIVEP1	ENSG00000095951.17	ENST00000491710.5	protein_coding	protein_coding	protein_coding	protein_coding	0	40	2	4.75398	4.876175	4.99837	0.00703931	0.00131369	0.0718189	0.0333932
chr3	101681857	101681949	1758892	0	-	0.413043	(0.408,0.44]	chr3	178423	8	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	RPL24	ENSG00000114391.13	ENST00000394077.8:ENST00000464595.1:ENST00000495401.5:ENST00000488288.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	45	2	4.22447	4.876025	5.52758	0.0161655	4.54953e-4	0.109464	0.0196892
chr10	100373512	100373607	4507844	0	+	0.578947	(0.57,1]	chr10	415081	1	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	OLMALINC	ENSG00000235823.4	ENST00000668904.1:ENST00000641708.1:ENST00000659159.1:ENST00000654233.1:ENST00000641799.1:ENST00000641571.1:ENST00000608396.2:ENST00000641087.1:ENST00000663103.1:ENST00000657502.1:ENST00000686136.1:ENST00000690014.1:ENST00000666713.1:ENST00000661158.1:ENST00000664100.1:ENST00000657262.1:ENST00000666154.1:ENST00000666045.1:ENST00000662712.1:ENST00000654563.1:ENST00000662018.1:ENST00000667278.1:ENST00000658059.1:ENST00000659770.1:ENST00000656449.1:ENST00000665022.1:ENST00000659075.1:ENST00000661096.1:ENST00000668101.1:ENST00000668316.1:ENST00000664224.1:ENST00000665755.1	lncRNA	lncRNA	lncRNA	lncRNA	11	420	2	4.856	4.87595	4.8959	1e-12	1e-12	5.45623e-8	4.97648e-8
chr7	44426479	44426579	3527646	0	-	0.58	(0.57,1]	chr7	328970	2	SS3_PROX	SS3_PROX:INTRON	NUDCD3	ENSG00000015676.18	ENST00000355451.8:ENST00000460110.5:ENST00000472246.5:ENST00000464812.1:ENST00000478769.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	31	2	4.7773	4.87594	4.97458	5.07088e-4	2.67728e-4	0.0202328	0.0149989
chr2	11334301	11334401	1068574	0	-	0.49	(0.476,0.515]	chr2	114093	462	INTRON	INTRON	ROCK2	ENSG00000134318.15	ENST00000315872.11:ENST00000261535.7:ENST00000462366.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	40	2	4.6932	4.875835	5.05847	0.00753088	0.00108081	0.074841	0.0300133
chr3	172080497	172080597	1559953	0	+	0.51	(0.476,0.515]	chr3	161527	332	INTRON	INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000421757.5:ENST00000469491.5:ENST00000336824.8:ENST00000423424.5:ENST00000416957.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	40	2	4.6932	4.875835	5.05847	0.00753088	0.00108081	0.074841	0.0300133
chr3	195375624	195375724	1895237	0	-	0.48	(0.476,0.515]	chr3	189674	175	INTRON	INTRON	ACAP2	ENSG00000114331.16	ENST00000326793.11:ENST00000635383.1:ENST00000480906.5:ENST00000481463.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	40	2	4.6932	4.875835	5.05847	0.00753088	0.00108081	0.074841	0.0300133
chr19	10406888	10406988	7136089	0	-	0.5	(0.476,0.515]	chr19	719577	29	INTRON	INTRON	CDC37	ENSG00000105401.9	ENST00000593124.1	protein_coding	protein_coding	protein_coding	protein_coding	0	40	2	4.77856	4.875545	4.97253	0.00311573	0.00305743	0.0509893	0.0498063
chr10	42540857	42540957	4603736	0	-	0.33	(0.32,0.35]	chr10	424114	148	INTRON	INTRON	ZNF37BP	ENSG00000234420.8	ENST00000452075.7:ENST00000692055.1:ENST00000689225.1:ENST00000686311.1:ENST00000686673.1:ENST00000688789.1:ENST00000690905.1:ENST00000435805.7:ENST00000687308.1:ENST00000692559.1:ENST00000690442.1:ENST00000473592.1:ENST00000691808.1:ENST00000692594.1:ENST00000691366.1:ENST00000689409.1:ENST00000685241.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	0	45	2	4.37269	4.87551	5.37833	0.0154102	0.00174321	0.108569	0.0375363
chr3	47088747	47088845	1680838	0	-	0.367347	(0.35,0.378]	chr3	171569	1	INTRON	INTRON	SETD2	ENSG00000181555.22	ENST00000691544.1:ENST00000638947.2:ENST00000686876.1:ENST00000431180.5:ENST00000409792.4:ENST00000330022.11:ENST00000686773.1:ENST00000685005.1:ENST00000690461.1:ENST00000685505.1:ENST00000692883.1:ENST00000693321.1:ENST00000688290.1:ENST00000691902.1:ENST00000690157.1:ENST00000692362.1:ENST00000685237.1:ENST00000445387.5:ENST00000685399.1:ENST00000484689.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	116	2	3.29622	4.8754550000000005	6.45469	2.133e-4	1.04528e-5	0.0128205	0.00253375
chr15	82539531	82539583	6247426	0	-	0.5	(0.476,0.515]	chr15	596173	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPS17	ENSG00000182774.13	ENST00000647841.1:ENST00000561157.5:ENST00000558397.1:ENST00000561068.5:ENST00000560612.1:ENST00000560639.1:ENST00000559776.1:ENST00000560229.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:non_stop_decay:nonsense_mediated_decay	0	49	2	3.97201	4.875170000000001	5.77833	0.030904	1.24749e-4	0.143385	0.010049
chr6	17919250	17919350	3067868	0	-	0.38	(0.378,0.408]	chr6	285100	207	INTRON	INTRON	KIF13A	ENSG00000137177.20	ENST00000378814.9:ENST00000259711.11:ENST00000378826.6:ENST00000378843.6:ENST00000636847.1:ENST00000507576.1:ENST00000505588.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	42	2	4.41169	4.87499	5.33829	0.0199606	3.59275e-4	0.109608	0.0169207
chr3	47640574	47640674	1683635	0	-	0.31	(0.28,0.32]	chr3	171996	14	INTRON	INTRON	SMARCC1	ENSG00000173473.11	ENST00000254480.10:ENST00000425518.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	43	2	4.66359	4.874905	5.08622	0.0193496	0.00227525	0.108861	0.0437013
chr1	51442906	51443005	453579	0	-	0.30303	(0.28,0.32]	chr1	54377	21	INTRON	INTRON	EPS15	ENSG00000085832.17	ENST00000371733.8:ENST00000371730.6	protein_coding	protein_coding	protein_coding	protein_coding	0	43	2	4.76031	4.874515	4.98872	0.00838468	0.00656106	0.0774402	0.0735539
chr17	57973301	57973399	6799704	0	-	0.285714	(0.28,0.32]	chr17	671372	19	UTR3	UTR3:EXON_MRNA	VEZF1	ENSG00000136451.9	ENST00000258963.7:ENST00000581208.2	protein_coding	protein_coding	protein_coding	protein_coding	0	43	2	4.76031	4.874515	4.98872	0.00838468	0.00656106	0.0774402	0.0735539
chr6	170540618	170540718	3267549	0	-	0.32	(0.28,0.32]	chr6	303367	29	INTRON	INTRON	PSMB1	ENSG00000008018.9	ENST00000262193.7:ENST00000462957.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	43	2	4.76031	4.874515	4.98872	0.00838468	0.00656106	0.0774402	0.0735539
chr21	38052810	38052910	7463409	0	-	0.47	(0.44,0.476]	chr21	760277	423	INTRON	INTRON	DSCR4	ENSG00000184029.9	ENST00000398948.5	lncRNA	lncRNA	lncRNA	lncRNA	0	40	2	4.68564	4.87426	5.06288	0.00816201	0.00102416	0.0766625	0.0294041
chr11	62867246	62867345	4799439	0	+	0.373737	(0.35,0.378]	chr11	444781	104	INTRON	INTRON	SLC3A2	ENSG00000168003.18	ENST00000680729.1:ENST00000680002.1:ENST00000681467.1:ENST00000377890.6:ENST00000538084.2:ENST00000681569.1:ENST00000680725.1:ENST00000377891.6:ENST00000377889.6:ENST00000681215.1:ENST00000535296.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	41	2	4.71953	4.873925	5.02832	0.0103314	0.00156444	0.0850389	0.0365263
chr1	19392104	19392204	387970	0	-	0.45	(0.44,0.476]	chr1	46371	61	INTRON	INTRON	CAPZB	ENSG00000077549.19	ENST00000264202.8:ENST00000264203.7:ENST00000375142.5:ENST00000482808.2:ENST00000674449.1:ENST00000674390.1:ENST00000375144.6:ENST00000674432.1:ENST00000433834.5:ENST00000674228.1:ENST00000459967.6:ENST00000489607.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	40	2	4.78293	4.87392	4.96491	0.0034249	0.00292033	0.0517761	0.0494641
chr1	45599393	45599491	93356	0	+	0.459184	(0.44,0.476]	chr1	12579	43	INTRON	INTRON	NASP	ENSG00000132780.17	ENST00000437901.6:ENST00000537798.5:ENST00000437362.6:ENST00000350030.8:ENST00000464190.6:ENST00000527359.5:ENST00000528084.5:ENST00000453748.5:ENST00000525515.5:ENST00000527470.5:ENST00000529333.5:ENST00000531532.5:ENST00000530840.5:ENST00000528238.5:ENST00000534101.1:ENST00000470768.5:ENST00000372052.8:ENST00000351223.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	40	2	4.78293	4.87392	4.96491	0.0034249	0.00292033	0.0517761	0.0494641
chr6	78942423	78942522	3140677	0	-	0.454545	(0.44,0.476]	chr6	292704	7	INTRON	INTRON	PHIP	ENSG00000146247.14	ENST00000275034.5:ENST00000479165.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	40	2	4.78293	4.87392	4.96491	0.0034249	0.00292033	0.0517761	0.0494641
chr9	34242608	34242707	4111912	0	+	0.474747	(0.44,0.476]	chr9	374742	1	INTRON	INTRON	UBAP1	ENSG00000165006.14	ENST00000625521.2:ENST00000379186.8:ENST00000297661.9:ENST00000626262.2:ENST00000359544.2	protein_coding	protein_coding	protein_coding	protein_coding	0	40	2	4.78293	4.87392	4.96491	0.0034249	0.00292033	0.0517761	0.0494641
chr1	246903648	246903748	681673	0	-	0.57	(0.515,0.57]	chr1	80006	3	SS5_PROX	SS5_PROX:INTRON	AHCTF1	ENSG00000153207.16	ENST00000648844.2:ENST00000326225.3:ENST00000366508.5	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.6831	4.873844999999999	5.06459	0.00471288	6.03964e-4	0.0600108	0.0223465
chr4	6831277	6831377	1922075	0	+	0.57	(0.515,0.57]	chr4	192999	62	INTRON	INTRON	KIAA0232	ENSG00000170871.12	ENST00000307659.6:ENST00000425103.5	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.6831	4.873844999999999	5.06459	0.00471288	6.03964e-4	0.0600108	0.0223465
chr22	49479496	49479596	7600874	0	-	0.44	(0.408,0.44]	chr22	778566	379	INTRON	INTRON	MIR3667HG	ENSG00000188511.13	ENST00000414287.5:ENST00000416411.1	lncRNA	lncRNA	lncRNA	lncRNA	1	83	2	4.09715	4.873825	5.6505	2.70553e-4	4.3007e-5	0.0150813	0.00530629
chr15	87349922	87350022	6253046	0	-	0.39	(0.378,0.408]	chr15	596790	227	INTRON	INTRON	ENSG00000259560	ENSG00000259560.2	ENST00000665121.1:ENST00000656130.1	lncRNA	lncRNA	lncRNA	lncRNA	1	91	2	3.85391	4.8738	5.89369	2.84248e-4	2.33849e-5	0.015495	0.00378116
chr1	61250367	61250467	129077	0	+	0.36	(0.35,0.378]	chr1	14788	152	INTRON	INTRON	NFIA	ENSG00000162599.17	ENST00000371191.5:ENST00000664495.1:ENST00000476646.5:ENST00000407417.7:ENST00000479364.1:ENST00000371189.8:ENST00000670151.1:ENST00000664149.1:ENST00000662015.1:ENST00000403491.8:ENST00000371187.7:ENST00000485903.6:ENST00000371185.6:ENST00000371184.6:ENST00000663597.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	41	2	4.82377	4.873659999999999	4.92355	0.00573514	0.00325499	0.0657377	0.0524329
chr18	46206014	46206114	6899401	0	+	0.37	(0.35,0.378]	chr18	683605	313	INTRON	INTRON	C18orf25	ENSG00000152242.11	ENST00000588730.1:ENST00000587591.5:ENST00000619230.1:ENST00000615052.5:ENST00000619301.4:ENST00000615553.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	41	2	4.82377	4.873659999999999	4.92355	0.00573514	0.00325499	0.0657377	0.0524329
chr1	246998650	246998748	682505	0	-	0.530612	(0.515,0.57]	chr1	80087	21	INTRON	INTRON	ZNF670-ZNF695:ZNF695	ENSG00000135747.11:ENSG00000197472.15	ENST00000465049.6:ENST00000479214.5:ENST00000366504.6:ENST00000491337.6:ENST00000487338.6:ENST00000498046.2:ENST00000474541.1:ENST00000339986.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	38	2	4.76984	4.873530000000001	4.97722	0.00198034	0.00168681	0.0411469	0.0370386
chr10	7800191	7800291	4387642	0	+	0.54	(0.515,0.57]	chr10	405051	1	SS5_PROX	SS5_PROX:INTRON	ATP5F1C	ENSG00000165629.20	ENST00000493053.5:ENST00000335698.4:ENST00000356708.12:ENST00000465936.5:ENST00000473809.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	38	2	4.76984	4.873530000000001	4.97722	0.00198034	0.00168681	0.0411469	0.0370386
chr7	100126506	100126606	3585613	0	-	0.57	(0.515,0.57]	chr7	334241	1	SS5_PROX	SS5_PROX:INTRON	ENSG00000242798	ENSG00000242798.1	ENST00000494221.1	lncRNA	lncRNA	lncRNA	lncRNA	0	38	2	4.76984	4.873530000000001	4.97722	0.00198034	0.00168681	0.0411469	0.0370386
chr3	19972705	19972804	1376293	0	+	0.272727	[0,0.28]	chr3	145058	16	INTRON	INTRON	RAB5A	ENSG00000144566.11	ENST00000273047.9:ENST00000412966.5:ENST00000446547.5:ENST00000422242.1:ENST00000469122.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	45	2	4.5461	4.873405	5.20071	0.0365918	0.00261806	0.138959	0.0470772
chr4	15680679	15680779	2115123	0	-	0.26	[0,0.28]	chr4	208898	204	INTRON	INTRON	FBXL5	ENSG00000118564.15	ENST00000510802.5:ENST00000507899.1:ENST00000515679.1:ENST00000514541.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	45	2	4.5461	4.873405	5.20071	0.0365918	0.00261806	0.138959	0.0470772
chr9	99118785	99118885	4175571	0	+	0.39	(0.378,0.408]	chr9	380654	131	INTRON	INTRON	TGFBR1	ENSG00000106799.13	ENST00000547314.5:ENST00000552573.6:ENST00000374990.6:ENST00000374994.9:ENST00000552516.5:ENST00000549766.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	86	2	4.2345	4.87312	5.51174	5.93655e-4	2.07828e-5	0.0225024	0.00353137
chr5	95756558	95756657	2431500	0	+	0.383838	(0.378,0.408]	chr5	233666	4	INTRON	INTRON	RHOBTB3	ENSG00000164292.13	ENST00000379982.8:ENST00000502541.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	153	2	2.95788	4.873105	6.78833	8.6542e-5	1.05031e-6	0.00783027	6.32938e-4
chr6	18261567	18261665	3069221	0	-	0.357143	(0.35,0.378]	chr6	285214	28	INTRON	INTRON	DEK	ENSG00000124795.17	ENST00000652689.1:ENST00000651624.1:ENST00000515770.2:ENST00000651992.1:ENST00000507591.2:ENST00000505224.5:ENST00000244776.11:ENST00000652576.1:ENST00000503715.5:ENST00000515742.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	138	2	3.2481	4.87301	6.49792	5.42695e-5	8.32584e-6	0.00603408	0.00219713
chr3	160406867	160406966	1544670	0	+	0.30303	(0.28,0.32]	chr3	160690	18	INTRON	INTRON	SMC4	ENSG00000113810.16	ENST00000472282.5:ENST00000472991.5:ENST00000357388.8:ENST00000469762.5:ENST00000468653.5:ENST00000467468.5:ENST00000469858.5:ENST00000489573.5:ENST00000462787.5:ENST00000344722.5:ENST00000470240.5:ENST00000497984.5:ENST00000487747.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	94	2	3.83973	4.872575	5.90542	3.92169e-4	2.68965e-4	0.0184748	0.0145349
chr11	1008531	1008630	4721944	0	+	0.373737	(0.35,0.378]	chr11	436746	5	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	AP2A2	ENSG00000183020.15	ENST00000332231.9:ENST00000448903.7:ENST00000529858.6:ENST00000693238.1:ENST00000687890.1:ENST00000687792.1:ENST00000528815.5:ENST00000525891.5:ENST00000688963.1:ENST00000529438.5:ENST00000526401.6:ENST00000685443.1:ENST00000687570.1:ENST00000689772.1:ENST00000689771.1:ENST00000686734.1:ENST00000531497.2:ENST00000688472.1:ENST00000691652.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	42	2	4.48184	4.872175	5.26251	0.0191702	6.20882e-4	0.108861	0.0223951
chr2	152689767	152689866	1246240	0	-	0.313131	(0.28,0.32]	chr2	132338	81	INTRON	INTRON	PRPF40A	ENSG00000196504.20	ENST00000410080.8:ENST00000545856.8:ENST00000696382.1:ENST00000696381.1:ENST00000354363.11:ENST00000493468.7:ENST00000448428.2:ENST00000467114.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	94	2	3.74806	4.871575	5.99509	4.11943e-4	2.74247e-4	0.0181365	0.0151711
chr20	48936900	48937000	7282727	0	+	0.33	(0.32,0.35]	chr20	740596	145	INTRON	INTRON	ARFGEF2	ENSG00000124198.10	ENST00000371917.5:ENST00000681399.1:ENST00000679436.1:ENST00000681885.1:ENST00000681021.1:ENST00000680871.1:ENST00000681656.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	43	2	4.45629	4.871295	5.2863	0.0246089	7.56575e-4	0.12011	0.0251966
chr7	92449019	92449091	3354392	0	+	0.347222	(0.32,0.35]	chr7	312619	3	EXON_MRNA	EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GATAD1	ENSG00000157259.8	ENST00000287957.5:ENST00000645746.1:ENST00000644160.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	43	2	4.45629	4.871295	5.2863	0.0246089	7.56575e-4	0.12011	0.0251966
chr17	40053924	40054008	6767937	0	-	0.488095	(0.476,0.515]	chr17	665837	4	UTR5	UTR5:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MED24	ENSG00000008838.21	ENST00000394126.5:ENST00000356271.7:ENST00000394128.7:ENST00000394127.6:ENST00000535508.6:ENST00000535071.6:ENST00000580885.5:ENST00000479829.5:ENST00000543759.6:ENST00000585306.5:ENST00000537674.6:ENST00000582023.5:ENST00000580517.5:ENST00000578161.2:ENST00000581054.1:ENST00000580302.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	42	2	4.43093	4.870755	5.31058	0.00931369	9.15544e-4	0.0855292	0.0278396
chr9	78019716	78019816	4271827	0	-	0.5	(0.476,0.515]	chr9	392880	970	INTRON	INTRON	GNAQ	ENSG00000156052.11	ENST00000286548.9:ENST00000411677.1	protein_coding	protein_coding	protein_coding	protein_coding	0	42	2	4.43093	4.870755	5.31058	0.00931369	9.15544e-4	0.0855292	0.0278396
chr21	22396793	22396893	7386336	0	+	0.41	(0.408,0.44]	chr21	752727	1836	INTRON	INTRON	ENSG00000226043	ENSG00000226043.2	ENST00000667099.1:ENST00000654607.1:ENST00000444130.1	lncRNA	lncRNA	lncRNA	lncRNA	3	131	2	3.29421	4.869855	6.4455	3.47956e-5	5.2743e-6	0.00469546	0.00170345
chr15	65701384	65701476	6208864	0	-	0.521739	(0.515,0.57]	chr15	592514	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DENND4A	ENSG00000174485.16	ENST00000443035.8:ENST00000431932.6:ENST00000635620.2:ENST00000564674.5:ENST00000562028.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	105	2	3.41978	4.869445	6.31911	1.03805e-4	5.57818e-7	0.00915599	4.00823e-4
chr2	55571534	55571633	1124650	0	-	0.333333	(0.32,0.35]	chr2	120617	28	INTRON	INTRON	PPP4R3B	ENSG00000275052.5	ENST00000616407.2:ENST00000611717.4:ENST00000616288.4:ENST00000482826.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	42	2	4.7197	4.869434999999999	5.01917	0.00568521	0.0055659	0.0678837	0.0648867
chr6	5641214	5641314	2796474	0	+	0.35	(0.32,0.35]	chr6	263693	275	INTRON	INTRON	FARS2	ENSG00000145982.13	ENST00000324331.10:ENST00000648580.1:ENST00000274680.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	42	2	4.7197	4.869434999999999	5.01917	0.00568521	0.0055659	0.0678837	0.0648867
chr7	135564009	135564109	3428377	0	+	0.35	(0.32,0.35]	chr7	319623	54	INTRON	INTRON	NUP205	ENSG00000155561.15	ENST00000285968.11:ENST00000489493.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	42	2	4.7197	4.869434999999999	5.01917	0.00568521	0.0055659	0.0678837	0.0648867
chr1	88806100	88806184	156999	0	+	0.27381	[0,0.28]	chr1	17098	2	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	PKN2	ENSG00000065243.20	ENST00000316005.11:ENST00000370521.8:ENST00000370513.9	protein_coding	protein_coding	protein_coding	protein_coding	0	44	2	4.82433	4.869235	4.91414	0.0200334	0.0064519	0.109608	0.0730725
chr7	132959725	132959825	3644660	0	-	0.23	[0,0.28]	chr7	338848	724	INTRON	INTRON	CHCHD3	ENSG00000106554.13	ENST00000262570.10:ENST00000448878.6:ENST00000496427.5:ENST00000423635.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	44	2	4.82433	4.869235	4.91414	0.0200334	0.0064519	0.109608	0.0730725
chr9	112315275	112315375	4317777	0	-	0.19	[0,0.28]	chr9	397079	170	INTRON	INTRON	PTBP3	ENSG00000119314.16	ENST00000334318.10:ENST00000458258.5:ENST00000374257.6:ENST00000374255.6:ENST00000343327.6:ENST00000487997.1:ENST00000210227.4:ENST00000450374.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	44	2	4.82433	4.869235	4.91414	0.0200334	0.0064519	0.109608	0.0730725
chr3	196428827	196428927	1899630	0	-	0.32	(0.28,0.32]	chr3	190226	127	INTRON	INTRON	UBXN7	ENSG00000163960.12	ENST00000296328.9:ENST00000429160.1:ENST00000428095.1:ENST00000381887.7:ENST00000493566.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	45	2	4.33765	4.868634999999999	5.39962	0.039714	7.06751e-4	0.143072	0.0241881
chr1	110893231	110893330	183646	0	+	0.282828	(0.28,0.32]	chr1	20372	3	INTRON	INTRON	CD53	ENSG00000143119.14	ENST00000648608.1:ENST00000271324.6:ENST00000476408.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	128	2	3.11673	4.86849	6.62025	6.61685e-4	1.70645e-5	0.0232856	0.00330681
chr3	10310469	10310568	1613208	0	-	0.393939	(0.378,0.408]	chr3	166596	44	INTRON	INTRON	SEC13	ENSG00000157020.18	ENST00000350697.8:ENST00000337354.8:ENST00000397109.7:ENST00000479868.6:ENST00000397117.5:ENST00000383801.6:ENST00000477547.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	84	2	4.06352	4.868449999999999	5.67338	3.05145e-4	5.51462e-5	0.0161236	0.00608953
chrX	71540569	71540669	7680022	0	+	0.25	[0,0.28]	chrX	786397	21	INTRON	INTRON	OGT	ENSG00000147162.14	ENST00000373719.8:ENST00000488174.5:ENST00000373701.7:ENST00000498566.3:ENST00000444774.3:ENST00000455587.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	188	2	2.91866	4.8682099999999995	6.81776	2.31603e-4	2.19365e-5	0.013445	0.00381314
chr11	646755	646855	4888984	0	-	0.27	[0,0.28]	chr11	457675	2	SS3_PROX	SS3_PROX:INTRON	DEAF1	ENSG00000177030.19	ENST00000382409.4:ENST00000527170.5:ENST00000685854.1:ENST00000683307.1:ENST00000528864.6:ENST00000525626.6:ENST00000682936.1:ENST00000690068.1:ENST00000692634.1:ENST00000687329.1:ENST00000686001.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	44	2	4.75964	4.867915	4.97619	0.0232081	0.00535756	0.118148	0.0663076
chr3	183760235	183760331	1580925	0	+	0.260417	[0,0.28]	chr3	163092	9	INTRON	INTRON	YEATS2	ENSG00000163872.16	ENST00000305135.10	protein_coding	protein_coding	protein_coding	protein_coding	0	44	2	4.75964	4.867915	4.97619	0.0232081	0.00535756	0.118148	0.0663076
chr7	74184620	74184719	3332330	0	+	0.242424	[0,0.28]	chr7	310037	3	INTRON	INTRON	EIF4H	ENSG00000106682.16	ENST00000678438.1:ENST00000489484.5:ENST00000677998.1:ENST00000495187.2:ENST00000265753.13:ENST00000353999.6:ENST00000677570.1:ENST00000677681.1:ENST00000678815.1:ENST00000679266.1:ENST00000679287.1:ENST00000479338.5:ENST00000678341.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	44	2	4.75964	4.867915	4.97619	0.0232081	0.00535756	0.118148	0.0663076
chrX	121370871	121370971	7716175	0	+	0.27	[0,0.28]	chrX	789394	5	PRIMIRNA	PRIMIRNA	MIR3672	ENSG00000265456.1	ENST00000584290.1	miRNA	primary_miRNA	miRNA	primary_miRNA	0	44	2	4.75964	4.867915	4.97619	0.0232081	0.00535756	0.118148	0.0663076
chr1	8658737	8658837	372192	0	-	0.28	[0,0.28]	chr1	43541	19	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000656437.1:ENST00000659924.1:ENST00000480342.5:ENST00000468247.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	44	2	4.84931	4.86778	4.88625	0.0173315	0.00779241	0.104099	0.0787356
chr1	229555956	229556055	653746	0	-	0.262626	[0,0.28]	chr1	77488	62	INTRON	INTRON	ABCB10	ENSG00000135776.5	ENST00000344517.5	protein_coding	protein_coding	protein_coding	protein_coding	0	44	2	4.84931	4.86778	4.88625	0.0173315	0.00779241	0.104099	0.0787356
chr16	7913280	7913379	6439640	0	-	0.262626	[0,0.28]	chr16	620339	185	INTRON	INTRON	ENSG00000260289	ENSG00000260289.2	ENST00000670665.1:ENST00000654046.1:ENST00000567103.2	lncRNA	lncRNA	lncRNA	lncRNA	0	44	2	4.84931	4.86778	4.88625	0.0173315	0.00779241	0.104099	0.0787356
chr18	26076782	26076881	6959589	0	-	0.20202	[0,0.28]	chr18	688461	79	INTRON	INTRON	SS18	ENSG00000141380.14	ENST00000415083.7:ENST00000542420.6:ENST00000579640.5:ENST00000269138.9:ENST00000269137.11:ENST00000585121.5:ENST00000539244.6:ENST00000585241.5:ENST00000578954.5:ENST00000579061.5:ENST00000577636.5:ENST00000584083.5:ENST00000578700.5:ENST00000582792.5:ENST00000581021.5:ENST00000577572.5:ENST00000582448.5:ENST00000581570.5:ENST00000577751.5:ENST00000580003.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	44	2	4.84931	4.86778	4.88625	0.0173315	0.00779241	0.104099	0.0787356
chr20	49131459	49131558	7351803	0	-	0.262626	[0,0.28]	chr20	749646	65	INTRON	INTRON	STAU1	ENSG00000124214.21	ENST00000371856.7:ENST00000371828.7:ENST00000340954.11:ENST00000347458.9:ENST00000360426.8:ENST00000371792.5:ENST00000371802.5:ENST00000437404.2	protein_coding	protein_coding	protein_coding	protein_coding	0	44	2	4.84931	4.86778	4.88625	0.0173315	0.00779241	0.104099	0.0787356
chr13	32611976	32612076	5465563	0	+	0.37	(0.35,0.378]	chr13	523717	250	INTRON	INTRON	PDS5B	ENSG00000083642.19	ENST00000315596.15:ENST00000482955.5:ENST00000498550.5:ENST00000450460.5:ENST00000493653.1:ENST00000466078.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	41	2	4.64457	4.867545	5.09052	0.012652	0.00123501	0.0926667	0.0326215
chr4	82961443	82961543	2180752	0	-	0.37	(0.35,0.378]	chr4	214500	146	INTRON	INTRON	LIN54	ENSG00000189308.11	ENST00000340417.8:ENST00000510877.5:ENST00000446851.6:ENST00000442461.6:ENST00000510557.5:ENST00000508171.5:ENST00000506560.5:ENST00000505397.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	41	2	4.64457	4.867545	5.09052	0.012652	0.00123501	0.0926667	0.0326215
chr11	108022334	108022433	4855863	0	+	0.212121	[0,0.28]	chr11	452870	126	INTRON	INTRON	CUL5	ENSG00000166266.14	ENST00000393094.7:ENST00000532064.5:ENST00000526303.1:ENST00000531427.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	47	2	4.29536	4.86752	5.43968	0.0590175	0.00113119	0.167915	0.0308465
chr1	230991792	230991891	336924	0	+	0.494949	(0.476,0.515]	chr1	39152	7	INTRON	INTRON	ARV1	ENSG00000173409.14	ENST00000497753.1:ENST00000310256.7:ENST00000366658.6:ENST00000480519.5:ENST00000450711.5:ENST00000435927.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	40	2	4.61402	4.86737	5.12072	0.00947755	8.42139e-4	0.0817766	0.0263691
chr12	54473345	54473445	5331722	0	-	0.51	(0.476,0.515]	chr12	508919	4	SS5_PROX	SS5_PROX:INTRON	GTSF1	ENSG00000170627.11	ENST00000546931.5:ENST00000305879.8:ENST00000552395.5:ENST00000546739.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	40	2	4.61402	4.86737	5.12072	0.00947755	8.42139e-4	0.0817766	0.0263691
chr3	136182706	136182806	1824103	0	-	0.41	(0.408,0.44]	chr3	183518	296	INTRON	INTRON	MSL2	ENSG00000174579.4	ENST00000309993.3:ENST00000434835.2:ENST00000481989.1:ENST00000491050.1:ENST00000473093.1	protein_coding	protein_coding	protein_coding	protein_coding	1	88	2	3.62972	4.867295	6.10487	7.19047e-4	5.90186e-6	0.0246202	0.00170648
chr17	8456466	8456564	6555582	0	+	0.367347	(0.35,0.378]	chr17	637348	12	INTRON	INTRON	NDEL1	ENSG00000166579.16	ENST00000334527.12:ENST00000585098.5:ENST00000380025.8:ENST00000402554.7:ENST00000582277.5:ENST00000581679.1	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	4.7486	4.8671050000000005	4.98561	0.00474226	0.00418965	0.0600445	0.0591344
chr2	173117359	173117459	920864	0	+	0.48	(0.476,0.515]	chr2	101411	258	INTRON	INTRON	MAP3K20	ENSG00000091436.17	ENST00000539448.5:ENST00000409176.6:ENST00000468408.5:ENST00000338983.7:ENST00000375213.8:ENST00000476618.5:ENST00000422149.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	40	2	4.69918	4.86692	5.03466	0.00400966	0.00252065	0.057767	0.0446195
chr22	41262179	41262278	7590909	0	-	0.50505	(0.476,0.515]	chr22	777349	2	INTRON	INTRON	RANGAP1	ENSG00000100401.20	ENST00000356244.8:ENST00000405486.5:ENST00000455915.6:ENST00000446258.5	protein_coding	protein_coding	protein_coding	protein_coding	0	40	2	4.69918	4.86692	5.03466	0.00400966	0.00252065	0.057767	0.0446195
chr5	131556082	131556182	2718378	0	-	0.48	(0.476,0.515]	chr5	255602	75	INTRON	INTRON	RAPGEF6	ENSG00000158987.22	ENST00000509018.6:ENST00000507093.5:ENST00000296859.10:ENST00000627212.2:ENST00000308008.10:ENST00000515170.5:ENST00000510071.5:ENST00000503398.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	40	2	4.69918	4.86692	5.03466	0.00400966	0.00252065	0.057767	0.0446195
chr5	176924947	176925047	2776107	0	-	0.49	(0.476,0.515]	chr5	261526	53	INTRON	INTRON	UIMC1	ENSG00000087206.17	ENST00000377227.8:ENST00000511320.6:ENST00000506128.5:ENST00000512031.5:ENST00000510698.2:ENST00000503273.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	40	2	4.69918	4.86692	5.03466	0.00400966	0.00252065	0.057767	0.0446195
chr7	128959807	128959906	3635610	0	-	0.50505	(0.476,0.515]	chr7	338022	21	INTRON	INTRON	TNPO3	ENSG00000064419.14	ENST00000627585.2:ENST00000265388.10:ENST00000471234.5:ENST00000482320.5:ENST00000471166.1	protein_coding	protein_coding	protein_coding	protein_coding	0	40	2	4.69918	4.86692	5.03466	0.00400966	0.00252065	0.057767	0.0446195
chr19	2135538	2135635	7115386	0	-	0.453608	(0.44,0.476]	chr19	715251	17	INTRON	INTRON	AP3D1	ENSG00000065000.19	ENST00000643116.3:ENST00000345016.9:ENST00000643010.1:ENST00000591284.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	43	2	4.33346	4.8667300000000004	5.4	0.0120349	7.02611e-4	0.0962115	0.024224
chr13	95225735	95225835	5639115	0	-	0.18	[0,0.28]	chr13	537151	146	INTRON	INTRON	ABCC4	ENSG00000125257.16	ENST00000645237.2:ENST00000643051.1:ENST00000643842.1:ENST00000646439.1:ENST00000643816.1:ENST00000536256.3:ENST00000643556.1:ENST00000629385.1:ENST00000642524.1:ENST00000645532.1:ENST00000644471.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	46	2	4.38387	4.86633	5.34879	0.0501911	0.00157139	0.156383	0.0365659
chr21	39202945	39203045	7464394	0	-	0.32	(0.28,0.32]	chr21	760378	4	SS3_PROX	SS3_PROX:INTRON	BRWD1	ENSG00000185658.14	ENST00000333229.6:ENST00000342449.8:ENST00000446924.5:ENST00000380800.7:ENST00000424441.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	43	2	4.58875	4.86608	5.14341	0.0230574	0.00185891	0.118056	0.039946
chr3	33599922	33600022	1652801	0	-	0.3	(0.28,0.32]	chr3	169573	28	INTRON	INTRON	CLASP2	ENSG00000163539.18	ENST00000399362.8:ENST00000682230.1:ENST00000468888.6:ENST00000359576.9:ENST00000650653.1:ENST00000480013.6:ENST00000461133.8:ENST00000635664.1	protein_coding	protein_coding	protein_coding	protein_coding	0	43	2	4.58875	4.86608	5.14341	0.0230574	0.00185891	0.118056	0.039946
chr7	75484097	75484197	3558911	0	-	0.28	[0,0.28]	chr7	331557	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	POM121C:ENSG00000242073	ENSG00000272391.6:ENSG00000242073.2	ENST00000615331.5:ENST00000398379.2:ENST00000415277.2	protein_coding	protein_coding	protein_coding:transcribed_unprocessed_pseudogene	protein_coding:transcribed_unprocessed_pseudogene	1	111	2	3.55112	4.86604	6.18096	0.00205086	4.96998e-5	0.0409264	0.00577648
chr1	31350570	31350670	61705	0	+	0.41	(0.408,0.44]	chr1	7865	12	INTRON	INTRON	ZCCHC17	ENSG00000121766.16	ENST00000618216.4:ENST00000546109.5:ENST00000616393.4:ENST00000616859.4:ENST00000615916.4:ENST00000373714.5:ENST00000344147.10:ENST00000627541.1	protein_coding	protein_coding	protein_coding	protein_coding	0	42	2	4.4358	4.86596	5.29612	0.00893097	0.00113523	0.0849778	0.0307488
chr1	119150753	119150848	199841	0	+	0.421053	(0.408,0.44]	chr1	22182	3	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	WARS2-AS1	ENSG00000231365.7	ENST00000667138.1:ENST00000425884.6:ENST00000688395.1:ENST00000440150.5:ENST00000670000.1:ENST00000418015.1:ENST00000413531.5:ENST00000667936.1:ENST00000685192.1:ENST00000445565.2	lncRNA	lncRNA	lncRNA	lncRNA	0	42	2	4.4358	4.86596	5.29612	0.00893097	0.00113523	0.0849778	0.0307488
chr2	196163827	196163927	1301891	0	-	0.43	(0.408,0.44]	chr2	136276	4	SS3_PROX	SS3_PROX:INTRON	STK17B	ENSG00000081320.11	ENST00000263955.9:ENST00000409228.5:ENST00000420683.1:ENST00000449152.1	protein_coding	protein_coding	protein_coding	protein_coding	0	42	2	4.4358	4.86596	5.29612	0.00893097	0.00113523	0.0849778	0.0307488
chr3	32770162	32770262	1393989	0	+	0.44	(0.408,0.44]	chr3	145962	2	SS5_PROX	SS5_PROX:INTRON	CNOT10	ENSG00000182973.20	ENST00000331889.10:ENST00000328834.10:ENST00000435630.5:ENST00000454516.7:ENST00000416457.5:ENST00000476967.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	42	2	4.4358	4.86596	5.29612	0.00893097	0.00113523	0.0849778	0.0307488
chr1	148145671	148145770	545447	0	-	0.454545	(0.44,0.476]	chr1	63795	16	INTRON	INTRON	NBPF11	ENSG00000263956.8	ENST00000615281.4:ENST00000682118.1:ENST00000614506.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	40	2	4.60647	4.8658	5.12513	0.0102339	7.96486e-4	0.0850389	0.0258804
chr13	113473823	113473923	5652660	0	-	0.47	(0.44,0.476]	chr13	538699	3	SS5_PROX	SS5_PROX:INTRON	DCUN1D2	ENSG00000150401.15	ENST00000478244.6:ENST00000332592.7:ENST00000375403.6:ENST00000438545.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	40	2	4.60647	4.8658	5.12513	0.0102339	7.96486e-4	0.0850389	0.0258804
chr10	125089217	125089317	4713622	0	-	0.32	(0.28,0.32]	chr10	434903	5	INTRON	INTRON	CTBP2	ENSG00000175029.17	ENST00000337195.9:ENST00000411419.6:ENST00000494626.6:ENST00000531469.5:ENST00000460976.5:ENST00000476817.1:ENST00000530884.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	43	2	4.68527	4.86553	5.04579	0.00819419	0.00714672	0.0810802	0.0723634
chr17	42962295	42962395	6774708	0	-	0.3	(0.28,0.32]	chr17	667593	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	PTGES3L-AARSD1:AARSD1	ENSG00000108825.18:ENSG00000266967.7	ENST00000360221.8:ENST00000427569.7:ENST00000409399.6:ENST00000409103.5:ENST00000421990.7:ENST00000423601.2:ENST00000450475.5:ENST00000441280.7:ENST00000430739.5:ENST00000591910.5:ENST00000436545.5:ENST00000416949.5:ENST00000492036.1:ENST00000452752.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	43	2	4.68527	4.86553	5.04579	0.00819419	0.00714672	0.0810802	0.0723634
chr3	42161371	42161471	1405144	0	+	0.52	(0.515,0.57]	chr3	147534	5	INTRON	INTRON	TRAK1	ENSG00000182606.17	ENST00000487159.5:ENST00000672026.1:ENST00000673621.2:ENST00000484786.5:ENST00000327628.10:ENST00000613405.4:ENST00000449246.5:ENST00000418790.5:ENST00000396175.5:ENST00000341421.7:ENST00000469506.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	40	2	4.31326	4.865405	5.41755	0.0141817	1.1703e-4	0.0959618	0.00929802
chr8	46583912	46584011	3943206	0	-	0.393939	(0.378,0.408]	chr8	361438	33	INTRON	INTRON	ASNSP1	ENSG00000248498.4	ENST00000641977.1:ENST00000641079.1:ENST00000518311.3:ENST00000641735.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	41	2	4.50056	4.865335	5.23011	0.015974	5.72873e-4	0.101453	0.0217398
chr3	47894519	47894619	1685539	0	-	0.46	(0.44,0.476]	chr3	172201	18	INTRON	INTRON	MAP4	ENSG00000047849.22	ENST00000429422.5:ENST00000683076.1:ENST00000395734.7:ENST00000426837.6:ENST00000360240.10:ENST00000383736.3:ENST00000482752.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	40	2	4.70355	4.86529	5.02703	0.00383786	0.00278015	0.0562562	0.0469265
chr7	65275536	65275636	3322021	0	+	0.46	(0.44,0.476]	chr7	308900	56	INTRON	INTRON	ENSG00000282381	ENSG00000282381.2	ENST00000687368.1:ENST00000632111.1:ENST00000685802.1	lncRNA	lncRNA	lncRNA	lncRNA	0	40	2	4.70355	4.86529	5.02703	0.00383786	0.00278015	0.0562562	0.0469265
chr21	43877444	43877544	7413912	0	+	0.46	(0.44,0.476]	chr21	755688	97	INTRON	INTRON	AGPAT3	ENSG00000160216.21	ENST00000291572.13:ENST00000448287.5	protein_coding	protein_coding	protein_coding	protein_coding	3	133	2	2.93704	4.86528	6.79352	2.76819e-4	5.89008e-7	0.0148174	4.50486e-4
chr12	91381833	91381933	5383030	0	-	0.3	(0.28,0.32]	chr12	513463	115	INTRON	INTRON	ENSG00000289605	ENSG00000289605.1	ENST00000685093.1	lncRNA	lncRNA	lncRNA	lncRNA	1	96	2	3.47062	4.864905	6.25919	0.00137212	9.00783e-5	0.0340241	0.00844245
chr11	86339125	86339224	4842735	0	+	0.575758	(0.57,1]	chr11	451825	12	INTRON	INTRON	HIKESHI	ENSG00000149196.17	ENST00000533986.5:ENST00000278483.8:ENST00000531485.5:ENST00000528004.5:ENST00000530208.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	31	2	4.60161	4.86487	5.12813	0.00142229	8.62401e-5	0.0340865	0.00783027
chr12	132143353	132143448	5448468	0	-	0.578947	(0.57,1]	chr12	521651	6	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DDX51	ENSG00000185163.10	ENST00000397333.4:ENST00000329073.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	31	2	4.60161	4.86487	5.12813	0.00142229	8.62401e-5	0.0340865	0.00783027
chr1	224947483	224947582	322530	0	+	0.262626	[0,0.28]	chr1	37105	173	INTRON	INTRON	DNAH14	ENSG00000185842.16	ENST00000445597.6:ENST00000430092.5:ENST00000366850.7:ENST00000400952.7:ENST00000682510.1:ENST00000366849.5:ENST00000498360.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	101	2	3.83715	4.864645	5.89214	9.08725e-4	3.63888e-4	0.0278396	0.0170637
chr2	215322899	215322998	1014022	0	+	0.40404	(0.378,0.408]	chr2	107833	28	INTRON	INTRON	ATIC	ENSG00000138363.15	ENST00000444305.5:ENST00000488712.5:ENST00000236959.14:ENST00000443953.5:ENST00000435675.5:ENST00000427397.5:ENST00000413174.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	41	2	4.60771	4.864495	5.12128	0.00567576	0.00251746	0.0678837	0.0446195
chr14	68479594	68479694	5771985	0	+	0.31	(0.28,0.32]	chr14	547113	16	INTRON	INTRON	RAD51B	ENSG00000182185.19	ENST00000487861.5:ENST00000487270.5:ENST00000488612.5:ENST00000553595.5:ENST00000497460.5:ENST00000554244.5:ENST00000478014.5:ENST00000469165.6:ENST00000460526.5:ENST00000557045.5:ENST00000554183.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	44	2	4.4263	4.864415	5.30253	0.0330296	0.0010319	0.133816	0.0294094
chr22	49605254	49605354	7602133	0	-	0.34	(0.32,0.35]	chr22	778570	96	INTRON	INTRON	MIR3667HG	ENSG00000188511.13	ENST00000414287.5:ENST00000416411.1:ENST00000689875.1	lncRNA	lncRNA	lncRNA	lncRNA	1	89	2	3.82296	4.8640550000000005	5.90515	2.45656e-4	2.30541e-4	0.013917	0.0138769
chr3	105834627	105834727	1760769	0	-	0.38	(0.378,0.408]	chr3	178561	100	INTRON	INTRON	CBLB	ENSG00000114423.23	ENST00000645759.1:ENST00000394030.8:ENST00000646499.1:ENST00000645425.1:ENST00000646825.1:ENST00000643322.1:ENST00000403724.5:ENST00000405772.5:ENST00000447441.6:ENST00000643403.1:ENST00000438603.6:ENST00000443752.2:ENST00000643192.1:ENST00000642907.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	84	2	4.09346	4.864045	5.63463	3.59226e-4	4.66745e-5	0.0175484	0.00555772
chr12	21657214	21657314	5278031	0	-	0.54	(0.515,0.57]	chr12	503027	1	SS3_ADJ	SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	LDHB	ENSG00000111716.14	ENST00000350669.5:ENST00000673047.2:ENST00000396076.5:ENST00000396075.5:ENST00000450584.5:ENST00000539782.1:ENST00000544151.1:ENST00000535112.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	38	2	4.68568	4.863965	5.04225	0.00270027	0.00131841	0.0479115	0.0331539
chr1	50774522	50774622	450395	0	-	0.24	[0,0.28]	chr1	54249	294	INTRON	INTRON	FAF1	ENSG00000185104.21	ENST00000396153.7:ENST00000487898.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	44	2	4.69191	4.863795	5.03568	0.0269474	0.00446141	0.123442	0.0610799
chr3	172807369	172807469	1563803	0	+	0.27	[0,0.28]	chr3	161824	2	SS3_PROX	SS3_PROX:INTRON	ECT2	ENSG00000114346.14	ENST00000232458.9:ENST00000540509.5:ENST00000392692.8:ENST00000417960.5:ENST00000441497.6:ENST00000437296.1	protein_coding	protein_coding	protein_coding	protein_coding	0	44	2	4.69191	4.863795	5.03568	0.0269474	0.00446141	0.123442	0.0610799
chr11	125658245	125658345	4883323	0	+	0.4	(0.378,0.408]	chr11	456613	12	INTRON	INTRON	CHEK1	ENSG00000149554.14	ENST00000428830.6:ENST00000524737.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	40	2	4.80968	4.863720000000001	4.91776	0.00679828	0.00196368	0.0711802	0.0411469
chr13	51966015	51966111	5596452	0	-	0.385417	(0.378,0.408]	chr13	534953	6	INTRON	INTRON	ATP7B	ENSG00000123191.16	ENST00000242839.10:ENST00000344297.9:ENST00000674147.1:ENST00000448424.7:ENST00000634620.1:ENST00000400370.8:ENST00000634844.1:ENST00000673772.1:ENST00000634308.1:ENST00000418097.7:ENST00000400366.6:ENST00000635406.1:ENST00000482841.6:ENST00000483772.2:ENST00000673864.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	40	2	4.80968	4.863720000000001	4.91776	0.00679828	0.00196368	0.0711802	0.0411469
chr1	183484272	183484372	273625	0	+	0.14	[0,0.28]	chr1	32019	100	INTRON	INTRON	SMG7	ENSG00000116698.22	ENST00000440812.7:ENST00000367537.7:ENST00000688051.1:ENST00000685780.1:ENST00000508461.5:ENST00000347615.6:ENST00000419169.5:ENST00000444547.6:ENST00000507469.5:ENST00000515829.6:ENST00000367538.1:ENST00000502375.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	44	2	4.78142	4.863515	4.94561	0.0150263	0.00943974	0.0994339	0.0861183
chr12	11011054	11011153	5267896	0	-	0.272727	[0,0.28]	chr12	502221	44	INTRON	INTRON	ENSG00000275778:PRH1	ENSG00000275778.2:ENSG00000231887.8	ENST00000536668.2:ENST00000535024.6:ENST00000539853.5:ENST00000541977.5:ENST00000536086.2:ENST00000534923.1:ENST00000541456.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	44	2	4.78142	4.863515	4.94561	0.0150263	0.00943974	0.0994339	0.0861183
chr6	154409443	154409543	3250067	0	-	0.31	(0.28,0.32]	chr6	302003	24	INTRON	INTRON	CNKSR3	ENSG00000153721.19	ENST00000607772.6:ENST00000433165.6:ENST00000479339.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	44	2	4.52233	4.863465	5.2046	0.0129279	0.00448664	0.0990564	0.0593175
chr6	17953425	17953525	3068211	0	-	0.42	(0.408,0.44]	chr6	285105	16	INTRON	INTRON	KIF13A	ENSG00000137177.20	ENST00000378814.9:ENST00000259711.11:ENST00000378826.6:ENST00000378843.6:ENST00000636847.1:ENST00000507576.1:ENST00000505588.1:ENST00000502704.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	83	2	4.15643	4.86308	5.56973	3.81714e-4	3.06341e-5	0.0181283	0.00441979
chr2	87802271	87802369	1172960	0	-	0.336735	(0.32,0.35]	chr2	125238	12	INTRON	INTRON	RGPD2	ENSG00000185304.16	ENST00000398146.5	protein_coding	protein_coding	protein_coding	protein_coding	1	90	2	4.06044	4.863049999999999	5.66566	6.06695e-4	7.3644e-5	0.0226059	0.00714826
chr19	34397666	34397763	7052829	0	+	0.494845	(0.476,0.515]	chr19	703425	5	EXON_MRNA	EXON_MRNA:INTRON	GPI	ENSG00000105220.17	ENST00000415930.8:ENST00000588991.7:ENST00000356487.11:ENST00000647446.1:ENST00000586425.2:ENST00000643067.1:ENST00000586392.1:ENST00000586077.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	82	2	4.02209	4.86295	5.70381	1.75496e-4	6.68973e-5	0.01216	0.00677892
chr22	19902147	19902246	7555917	0	-	0.434343	(0.408,0.44]	chr22	772518	27	INTRON	INTRON	TXNRD2	ENSG00000184470.21	ENST00000400518.5:ENST00000542719.6:ENST00000494454.5:ENST00000474308.5:ENST00000400525.6:ENST00000400521.7:ENST00000400519.6:ENST00000635155.1:ENST00000491939.6:ENST00000334363.14:ENST00000475995.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	88	2	3.81928	4.862830000000001	5.90638	3.06208e-4	1.84308e-5	0.0161362	0.00328489
chr19	11664941	11665040	7018500	0	+	0.434343	(0.408,0.44]	chr19	697745	122	INTRON	INTRON	ENSG00000197332	ENSG00000197332.9	ENST00000666937.1:ENST00000344893.4	lncRNA	lncRNA	lncRNA	lncRNA	0	41	2	4.42713	4.8624600000000004	5.29779	0.0173083	3.80479e-4	0.104099	0.0176313
chr7	92252815	92252915	3352860	0	+	0.44	(0.408,0.44]	chr7	312479	59	INTRON	INTRON	ANKIB1	ENSG00000001629.10	ENST00000265742.8	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	4.42713	4.8624600000000004	5.29779	0.0173083	3.80479e-4	0.104099	0.0176313
chr3	47690506	47690603	1684150	0	-	0.412371	(0.408,0.44]	chr3	172052	7	INTRON	INTRON	SMARCC1	ENSG00000173473.11	ENST00000254480.10:ENST00000425518.5:ENST00000462198.5:ENST00000485737.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	40	2	4.7041	4.86219	5.02028	0.00381677	0.00303216	0.0562562	0.0493883
chr1	22072063	22072161	42399	0	+	0.397959	(0.378,0.408]	chr1	5090	24	INTRON	INTRON	ENSG00000289694:CDC42	ENSG00000289694.1:ENSG00000070831.18	ENST00000695855.1:ENST00000695856.1:ENST00000344548.8:ENST00000400259.5:ENST00000667384.2:ENST00000411827.2:ENST00000695858.1:ENST00000695857.1:ENST00000315554.14:ENST00000695859.1:ENST00000498236.1:ENST00000656825.1:ENST00000651171.1:ENST00000652582.1:ENST00000695860.1:ENST00000695796.1:ENST00000695797.1:ENST00000662562.2:ENST00000695798.1:ENST00000695799.1:ENST00000695800.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	40	2	4.73839	4.8621300000000005	4.98587	0.00837252	0.00152268	0.0774402	0.0360297
chr1	212861653	212861751	309870	0	+	0.408163	(0.378,0.408]	chr1	35783	21	INTRON	INTRON	FLVCR1	ENSG00000162769.13	ENST00000366971.9:ENST00000419102.1	protein_coding	protein_coding	protein_coding	protein_coding	0	40	2	4.73839	4.8621300000000005	4.98587	0.00837252	0.00152268	0.0774402	0.0360297
chr14	32126978	32127078	5681786	0	+	0.4	(0.378,0.408]	chr14	541053	93	INTRON	INTRON	ARHGAP5	ENSG00000100852.14	ENST00000556611.5:ENST00000539826.6:ENST00000396582.6:ENST00000345122.8:ENST00000433497.5:ENST00000554090.1:ENST00000557643.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	40	2	4.73839	4.8621300000000005	4.98587	0.00837252	0.00152268	0.0774402	0.0360297
chr3	48255416	48255515	1420620	0	+	0.40404	(0.378,0.408]	chr3	149305	74	INTRON	INTRON	ZNF589	ENSG00000164048.14	ENST00000427617.6:ENST00000412564.5:ENST00000354698.8:ENST00000440261.6:ENST00000448461.5:ENST00000457782.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	40	2	4.73839	4.8621300000000005	4.98587	0.00837252	0.00152268	0.0774402	0.0360297
chr4	159277607	159277707	2075258	0	+	0.4	(0.378,0.408]	chr4	205230	90	INTRON	INTRON	RAPGEF2	ENSG00000109756.10	ENST00000644474.1:ENST00000691494.1:ENST00000505478.5:ENST00000504604.5:ENST00000644902.1:ENST00000511336.5:ENST00000510510.5:ENST00000264431.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	40	2	4.73839	4.8621300000000005	4.98587	0.00837252	0.00152268	0.0774402	0.0360297
chr9	93453387	93453487	4158062	0	+	0.38	(0.378,0.408]	chr9	379127	6	INTRON	INTRON	FAM120A	ENSG00000048828.17	ENST00000277165.11:ENST00000375389.7:ENST00000446420.2	protein_coding	protein_coding	protein_coding	protein_coding	0	40	2	4.73839	4.8621300000000005	4.98587	0.00837252	0.00152268	0.0774402	0.0360297
chr10	26815737	26815837	4584047	0	-	0.54	(0.515,0.57]	chr10	422397	381	INTRON	INTRON	ABI1	ENSG00000136754.18	ENST00000376138.7:ENST00000376166.5:ENST00000376160.5:ENST00000376139.6:ENST00000376142.6:ENST00000359188.8:ENST00000376170.8:ENST00000536334.5:ENST00000490841.6:ENST00000376137.8:ENST00000376140.4:ENST00000346832.10:ENST00000473481.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	39	2	4.41498	4.862095	5.30921	0.0106866	1.98811e-4	0.0861859	0.0122787
chr16	82160311	82160411	6531434	0	-	0.4	(0.378,0.408]	chr16	632770	84	INTRON	INTRON	MPHOSPH6	ENSG00000135698.10	ENST00000563100.5:ENST00000258169.9:ENST00000563504.5:ENST00000568016.1:ENST00000569599.5:ENST00000566748.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	45	2	4.21226	4.862	5.51174	0.0177403	5.93655e-4	0.11319	0.0225024
chr14	31171360	31171460	5858643	0	-	0.39	(0.378,0.408]	chr14	556692	1	SS5_PROX	SS5_PROX:INTRON	HECTD1	ENSG00000092148.14	ENST00000399332.6:ENST00000553700.5:ENST00000693685.1:ENST00000692835.1:ENST00000554882.6:ENST00000611816.5:ENST00000688933.1:ENST00000691390.1:ENST00000553957.6:ENST00000687002.1:ENST00000554471.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	40	2	4.84627	4.861945	4.87762	0.00553849	0.00254319	0.0648867	0.0465056
chr17	44040955	44041055	6778137	0	-	0.4	(0.378,0.408]	chr17	668123	3	INTRON	INTRON	LSM12	ENSG00000161654.10	ENST00000591247.6:ENST00000293406.8:ENST00000585388.2	protein_coding	protein_coding	protein_coding	protein_coding	0	40	2	4.84627	4.861945	4.87762	0.00553849	0.00254319	0.0648867	0.0465056
chr4	1708085	1708185	2095183	0	-	0.49	(0.476,0.515]	chr4	207220	40	INTRON	INTRON	SLBP	ENSG00000163950.13	ENST00000489418.6:ENST00000429429.6:ENST00000318386.8:ENST00000483348.5:ENST00000488267.5:ENST00000480936.1	protein_coding	protein_coding	protein_coding	protein_coding	1	87	2	3.89433	4.861475	5.82862	1.98377e-4	3.00692e-5	0.0129156	0.00436729
chr12	122585135	122585223	5241200	0	+	0.409091	(0.408,0.44]	chr12	497763	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	KNTC1	ENSG00000184445.12	ENST00000450485.6:ENST00000333479.12	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	4.53088	4.86145	5.19202	0.00669275	0.0016671	0.0738715	0.0369207
chr14	69770104	69770194	5777197	0	+	0.188889	[0,0.28]	chr14	547360	7	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SRSF5	ENSG00000100650.16	ENST00000553521.5:ENST00000554465.5:ENST00000394366.6:ENST00000557154.6:ENST00000553635.5:ENST00000556184.5:ENST00000557460.5:ENST00000556587.5:ENST00000555547.5:ENST00000556330.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	246	2	2.62766	4.85976	7.09186	2.13091e-4	6.12602e-6	0.0128158	0.00185846
chr2	197488823	197488901	1307051	0	-	0.423077	(0.408,0.44]	chr2	136767	4	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HSPD1	ENSG00000144381.18	ENST00000388968.8:ENST00000426480.2:ENST00000345042.6:ENST00000452200.6:ENST00000679291.1:ENST00000677403.1:ENST00000678621.1:ENST00000678545.1:ENST00000676933.1:ENST00000678170.1:ENST00000476746.6:ENST00000678969.1:ENST00000428204.6:ENST00000418022.2:ENST00000439605.2:ENST00000440114.2:ENST00000461097.2:ENST00000677792.1:ENST00000678761.1:ENST00000677913.1:ENST00000677454.1:ENST00000491249.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	88	2	3.84859	4.85953	5.87047	2.66911e-4	2.24671e-5	0.0149989	0.0036973
chr16	30085297	30085376	6336878	0	+	0.189873	[0,0.28]	chr16	607230	4	UTR3	UTR3:EXON_MRNA	PPP4C	ENSG00000149923.14	ENST00000279387.12:ENST00000563200.5:ENST00000566749.5:ENST00000627746.2:ENST00000561610.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	45	2	4.46726	4.85952	5.25178	0.0427997	0.0022031	0.148082	0.0435144
chr5	81294586	81294686	2662849	0	-	0.32	(0.28,0.32]	chr5	252321	434	INTRON	INTRON	CKMT2-AS1	ENSG00000247572.9	ENST00000663674.1:ENST00000503483.6:ENST00000511495.1:ENST00000512287.1:ENST00000502041.3:ENST00000690798.1:ENST00000670957.1:ENST00000660242.1:ENST00000500148.6:ENST00000669977.1:ENST00000656836.1:ENST00000501927.2:ENST00000505295.1	lncRNA	lncRNA	lncRNA	lncRNA	1	95	2	3.50836	4.859225	6.21009	0.00117393	1.11538e-4	0.0316446	0.00945289
chr2	60923133	60923233	786043	0	+	0.4	(0.378,0.408]	chr2	88435	7	UTR3	UTR3:EXON_MRNA	REL	ENSG00000162924.15	ENST00000295025.12:ENST00000394479.4	protein_coding	protein_coding	protein_coding	protein_coding	1	91	2	3.93523	4.859204999999999	5.78318	1.93873e-4	4.21479e-5	0.0127226	0.0052571
chr15	58888121	58888202	6193651	0	-	0.333333	(0.32,0.35]	chr15	590028	2	SS5_PROX	SS5_PROX:INTRON	SLTM	ENSG00000137776.17	ENST00000380516.7:ENST00000432750.5:ENST00000492526.5:ENST00000557924.5:ENST00000558052.1:ENST00000560695.1:ENST00000557791.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	42	2	4.53988	4.85905	5.17822	0.0202178	0.00115625	0.109913	0.0313436
chr20	37198681	37198770	7266328	0	+	0.325843	(0.32,0.35]	chr20	738398	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPN2	ENSG00000118705.17	ENST00000456102.5:ENST00000373622.9:ENST00000373632.8:ENST00000237530.11:ENST00000462163.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	42	2	4.53988	4.85905	5.17822	0.0202178	0.00115625	0.109913	0.0313436
chr3	64016455	64016553	1724013	0	-	0.326531	(0.32,0.35]	chr3	176303	30	EXON_MRNA	EXON_MRNA:INTRON	PSMD6	ENSG00000163636.11	ENST00000394431.6:ENST00000295901.9:ENST00000480205.5:ENST00000467853.5:ENST00000492933.5:ENST00000476464.5:ENST00000482510.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	42	2	4.53988	4.85905	5.17822	0.0202178	0.00115625	0.109913	0.0313436
chr10	119072299	119072389	4704839	0	-	0.211111	[0,0.28]	chr10	434002	9	INTRON	INTRON	EIF3A	ENSG00000107581.13	ENST00000369144.8:ENST00000541549.2	protein_coding	protein_coding	protein_coding	protein_coding	0	45	2	4.55618	4.85874	5.1613	0.0171034	0.00866441	0.110899	0.0787025
chr4	98909377	98909477	2208323	0	-	0.33	(0.32,0.35]	chr4	216177	3	SS5_PROX	SS5_PROX:INTRON	EIF4E	ENSG00000151247.13	ENST00000450253.7:ENST00000280892.10:ENST00000515638.5:ENST00000504432.5:ENST00000511644.5:ENST00000505992.1:ENST00000507665.5:ENST00000504472.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	42	2	4.64046	4.8583750000000006	5.07629	0.00724767	0.00468114	0.0756327	0.0600108
chr10	48410767	48410867	4432037	0	+	0.36	(0.35,0.378]	chr10	408600	2	INTRON	INTRON	MAPK8	ENSG00000107643.17	ENST00000395611.7:ENST00000374189.6:ENST00000429041.6:ENST00000374179.8:ENST00000360332.7:ENST00000374182.7:ENST00000374176.8:ENST00000374174.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	41	2	4.5655	4.85783	5.15016	0.0155464	9.78549e-4	0.100909	0.0287765
chr3	138573583	138573683	1829432	0	-	0.36	(0.35,0.378]	chr3	183892	2	INTRON	INTRON	CEP70	ENSG00000114107.9	ENST00000264982.8:ENST00000489254.5:ENST00000484888.5:ENST00000474781.5:ENST00000481834.5:ENST00000468900.5:ENST00000462419.5:ENST00000478673.5:ENST00000464035.5:ENST00000470159.5:ENST00000485115.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	41	2	4.5655	4.85783	5.15016	0.0155464	9.78549e-4	0.100909	0.0287765
chr15	39312362	39312462	6149483	0	-	0.35	(0.32,0.35]	chr15	584987	125	INTRON	INTRON	ENSG00000259345	ENSG00000259345.7	ENST00000560484.1:ENST00000558209.1:ENST00000559318.1	lncRNA	lncRNA	lncRNA	lncRNA	0	47	2	4.06299	4.8576049999999995	5.65222	0.0559439	1.55757e-4	0.165463	0.0106835
chr6	10702739	10702821	2810497	0	+	0.341463	(0.32,0.35]	chr6	264398	1	SS5_PROX	SS5_PROX:INTRON	PAK1IP1	ENSG00000111845.5	ENST00000379568.4	protein_coding	protein_coding	protein_coding	protein_coding	1	97	2	3.8032	4.856835	5.91047	4.69031e-4	4.45216e-5	0.0200452	0.00541025
chr10	27152128	27152228	4586269	0	-	0.19	[0,0.28]	chr10	422781	27	INTRON	INTRON	YME1L1	ENSG00000136758.20	ENST00000376016.8:ENST00000613434.4:ENST00000326799.7:ENST00000491542.6:ENST00000427324.5:ENST00000396296.7:ENST00000477432.1	protein_coding	protein_coding	protein_coding	protein_coding	0	44	2	4.62084	4.856825000000001	5.09281	0.0313633	0.00372534	0.13151	0.0561984
chr5	79657700	79657800	2399195	0	+	0.28	[0,0.28]	chr5	231745	3	INTRON	INTRON	TENT2	ENSG00000164329.14	ENST00000423041.6:ENST00000504233.5:ENST00000453514.6:ENST00000428308.6:ENST00000296783.7:ENST00000504982.1:ENST00000513735.5:ENST00000515298.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	44	2	4.62084	4.856825000000001	5.09281	0.0313633	0.00372534	0.13151	0.0561984
chr20	6022879	6022979	7230718	0	+	0.39	(0.378,0.408]	chr20	734841	1	SS3_PROX	SS3_PROX:INTRON	CRLS1	ENSG00000088766.12	ENST00000452938.5:ENST00000378863.9:ENST00000378868.4:ENST00000489345.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	40	2	4.77105	4.856775	4.9425	0.00452675	0.00330823	0.0595107	0.0527031
chr7	105106103	105106182	3375576	0	+	0.379747	(0.378,0.408]	chr7	315987	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	KMT2E	ENSG00000005483.22	ENST00000257745.9:ENST00000334884.9:ENST00000311117.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	40	2	4.77105	4.856775	4.9425	0.00452675	0.00330823	0.0595107	0.0527031
chr18	14109106	14109206	6952392	0	-	0.28	[0,0.28]	chr18	687741	23	INTRON	INTRON	ZNF519	ENSG00000175322.12	ENST00000592345.5:ENST00000589203.5:ENST00000587419.5:ENST00000592049.5:ENST00000592411.5:ENST00000591393.1:ENST00000590202.3:ENST00000589498.5:ENST00000588435.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	44	2	4.71017	4.8564	5.00263	0.013055	0.0114708	0.0956037	0.093385
chr2	176312035	176312135	925644	0	+	0.25	[0,0.28]	chr2	101688	73	INTRON	INTRON	MTX2	ENSG00000128654.14	ENST00000420864.5:ENST00000249442.11:ENST00000423461.6:ENST00000443241.5:ENST00000452865.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	44	2	4.71017	4.8564	5.00263	0.013055	0.0114708	0.0956037	0.093385
chr7	64343625	64343724	3319740	0	+	0.242424	[0,0.28]	chr7	308636	63	INTRON	INTRON	ZNF736	ENSG00000234444.10	ENST00000355095.8:ENST00000423484.3	protein_coding	protein_coding	protein_coding	protein_coding	0	44	2	4.71017	4.8564	5.00263	0.013055	0.0114708	0.0956037	0.093385
chr8	105478935	105479035	3838851	0	+	0.24	[0,0.28]	chr8	354063	273	INTRON	INTRON	ZFPM2	ENSG00000169946.14	ENST00000407775.7:ENST00000520492.5:ENST00000520027.5:ENST00000524235.5:ENST00000511341.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	44	2	4.71017	4.8564	5.00263	0.013055	0.0114708	0.0956037	0.093385
chr7	99127282	99127382	3582977	0	-	0.38	(0.378,0.408]	chr7	333710	57	INTRON	INTRON	SMURF1	ENSG00000198742.10	ENST00000361368.7:ENST00000361125.1:ENST00000472627.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	83	2	3.76175	4.8562449999999995	5.95074	2.68579e-4	8.87003e-5	0.0145349	0.00842626
chr11	68492068	68492167	4817646	0	+	0.353535	(0.35,0.378]	chr11	448907	309	INTRON	INTRON	PPP6R3	ENSG00000110075.15	ENST00000530427.5:ENST00000528635.5:ENST00000529907.5:ENST00000533127.5:ENST00000534534.5:ENST00000529344.5:ENST00000524845.5:ENST00000393800.7:ENST00000265637.8:ENST00000524904.5:ENST00000393801.7:ENST00000265636.9:ENST00000529710.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	43	2	4.40128	4.85593	5.31058	0.0120289	0.00160599	0.0962115	0.0364977
chr5	177169293	177169393	2554055	0	+	0.39	(0.378,0.408]	chr5	243929	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	NSD1	ENSG00000165671.22	ENST00000508896.6:ENST00000689549.1:ENST00000354179.9:ENST00000686993.1:ENST00000689326.1:ENST00000439151.7:ENST00000510954.6:ENST00000689345.1:ENST00000347982.9:ENST00000687453.1:ENST00000685206.1:ENST00000638627.3:ENST00000644863.2:ENST00000688613.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	90	2	3.85391	4.85585	5.85779	2.84248e-4	2.83884e-5	0.015495	0.00422437
chr1	160309545	160309637	571968	0	-	0.315217	(0.28,0.32]	chr1	69322	5	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	COPA	ENSG00000122218.17	ENST00000241704.8:ENST00000696204.1:ENST00000696203.1:ENST00000696202.1:ENST00000649963.1:ENST00000696208.1:ENST00000696207.1:ENST00000696206.1:ENST00000649676.1:ENST00000368069.7:ENST00000647693.1:ENST00000649787.1:ENST00000650154.1:ENST00000647799.1:ENST00000648805.1:ENST00000647683.1:ENST00000649231.1:ENST00000648501.1:ENST00000696209.1:ENST00000696210.1:ENST00000696211.1:ENST00000647899.1:ENST00000696212.1:ENST00000481040.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	43	2	4.50981	4.854115	5.19842	0.0275554	0.00152333	0.123904	0.0360297
chr3	44802393	44802474	1412644	0	+	0.308642	(0.28,0.32]	chr3	148226	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	KIF15	ENSG00000163808.17	ENST00000438321.5:ENST00000326047.9:ENST00000481166.6:ENST00000425755.5:ENST00000493134.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	43	2	4.50981	4.854115	5.19842	0.0275554	0.00152333	0.123904	0.0360297
chr16	89689597	89689692	6421496	0	+	0.494737	(0.476,0.515]	chr16	616486	2	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	CDK10	ENSG00000185324.22	ENST00000331006.12:ENST00000505473.5:ENST00000508723.5:ENST00000511415.5:ENST00000502547.5:ENST00000353379.12:ENST00000505733.5:ENST00000512912.5:ENST00000510811.6:ENST00000507205.5:ENST00000472018.5:ENST00000625631.1:ENST00000564192.5:ENST00000378277.8:ENST00000514965.5:ENST00000503560.1:ENST00000504473.5:ENST00000568456.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	84	2	3.49411	4.854	6.21389	9.23453e-4	1.41639e-5	0.0278392	0.00299745
chr19	2196251	2196349	6996501	0	+	0.530612	(0.515,0.57]	chr19	693461	13	INTRON	INTRON	DOT1L	ENSG00000104885.19	ENST00000398665.8:ENST00000686010.1:ENST00000452696.5	protein_coding	protein_coding	protein_coding	protein_coding	3	120	2	2.98563	4.85382	6.72201	1.77567e-4	1.65475e-7	0.0116289	1.98188e-4
chr12	57371363	57371463	5338661	0	-	0.33	(0.32,0.35]	chr12	510710	300	INTRON	INTRON	R3HDM2	ENSG00000179912.21	ENST00000402412.6:ENST00000347140.7:ENST00000634871.1:ENST00000448732.1	protein_coding	protein_coding	protein_coding	protein_coding	0	44	2	4.273	4.8538	5.4346	0.0368357	4.09682e-4	0.138959	0.0181306
chr1	180718590	180718690	270462	0	+	0.32	(0.28,0.32]	chr1	31620	358	INTRON	INTRON	XPR1	ENSG00000143324.14	ENST00000367590.9:ENST00000367589.3	protein_coding	protein_coding	protein_coding	protein_coding	1	93	2	3.89776	4.85378	5.8098	5.67703e-4	2.03846e-4	0.0220072	0.0124395
chr21	46373718	46373818	7421727	0	+	0.52	(0.515,0.57]	chr21	756785	62	INTRON	INTRON	PCNT	ENSG00000160299.18	ENST00000466474.6:ENST00000695525.1:ENST00000695558.1:ENST00000359568.10:ENST00000480896.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	118	2	3.15342	4.85361	6.5538	6.53448e-5	5.11196e-7	0.00669181	4.19831e-4
chr17	32010430	32010530	6596359	0	+	0.39	(0.378,0.408]	chr17	641626	19	INTRON	INTRON	LRRC37B	ENSG00000185158.12	ENST00000583342.1:ENST00000579206.5:ENST00000543378.6:ENST00000581370.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	42	2	4.31699	4.853235	5.38948	0.0250408	2.85992e-4	0.12011	0.0150568
chr16	30276863	30276963	6472759	0	-	0.37	(0.35,0.378]	chr16	625607	2	SS5_PROX	SS5_PROX:INTRON	SMG1P5	ENSG00000183604.15	ENST00000529428.5:ENST00000532983.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	42	2	4.49626	4.85322	5.21018	0.00917582	0.00228003	0.0855292	0.0426265
chr2	159260243	159260343	1249233	0	-	0.37	(0.35,0.378]	chr2	132473	4	SS3_PROX	SS3_PROX:INTRON	WDSUB1	ENSG00000196151.11	ENST00000359774.9:ENST00000358147.8:ENST00000409990.7:ENST00000392796.7:ENST00000409124.1	protein_coding	protein_coding	protein_coding	protein_coding	0	42	2	4.49626	4.85322	5.21018	0.00917582	0.00228003	0.0855292	0.0426265
chr1	149860336	149860433	549564	0	-	0.443299	(0.44,0.476]	chr1	64521	5	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	H4C15	ENSG00000270276.3	ENST00000621520.1:ENST00000612061.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	0	40	2	4.61954	4.853065	5.08659	0.00506805	0.00226401	0.0646039	0.0425438
chr2	113731183	113731283	1216563	0	-	0.33	(0.32,0.35]	chr2	129489	2	SS5_PROX	SS5_PROX:INTRON	SLC35F5	ENSG00000115084.15	ENST00000245680.7:ENST00000409106.5:ENST00000447673.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	43	2	4.36755	4.852499999999999	5.33745	0.0300552	6.1485e-4	0.129138	0.0223951
chr3	43310686	43310786	1409006	0	+	0.33	(0.32,0.35]	chr3	147857	65	INTRON	INTRON	SNRK	ENSG00000163788.14	ENST00000454177.5:ENST00000429705.6:ENST00000296088.12:ENST00000437827.1:ENST00000462810.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	44	2	4.37269	4.852435	5.33218	0.0154102	0.00204346	0.108569	0.04086
chr4	150907090	150907183	2270678	0	-	0.419355	(0.408,0.44]	chr4	220875	3	INTRON	INTRON	LRBA	ENSG00000198589.14	ENST00000357115.9:ENST00000651943.2:ENST00000510413.5:ENST00000651035.1:ENST00000507224.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	87	2	3.62972	4.851675	6.07363	7.19047e-4	7.09547e-6	0.0246202	0.00188852
chr14	76179022	76179122	5796248	0	+	0.32	(0.28,0.32]	chr14	549173	8	EXON_MRNA	EXON_MRNA:INTRON	GPATCH2L	ENSG00000089916.18	ENST00000554375.5:ENST00000261530.12:ENST00000554125.5:ENST00000312858.9:ENST00000621494.1:ENST00000554799.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	42	2	4.80255	4.851084999999999	4.89962	0.0137406	0.00425206	0.0949306	0.0595557
chr2	170959501	170959598	916706	0	+	0.28866000000000003	(0.28,0.32]	chr2	100906	26	INTRON	INTRON	GORASP2	ENSG00000115806.13	ENST00000234160.5:ENST00000493692.5:ENST00000442798.5:ENST00000486498.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	42	2	4.80255	4.851084999999999	4.89962	0.0137406	0.00425206	0.0949306	0.0595557
chr2	226920536	226920635	1024519	0	+	0.313131	(0.28,0.32]	chr2	109473	58	INTRON	INTRON	RHBDD1	ENSG00000144468.17	ENST00000341329.7:ENST00000392062.7:ENST00000409053.1:ENST00000491490.5:ENST00000493526.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	42	2	4.80255	4.851084999999999	4.89962	0.0137406	0.00425206	0.0949306	0.0595557
chr5	79665893	79665993	2399277	0	+	0.3	(0.28,0.32]	chr5	231745	85	INTRON	INTRON	TENT2	ENSG00000164329.14	ENST00000423041.6:ENST00000504233.5:ENST00000453514.6:ENST00000428308.6:ENST00000296783.7:ENST00000504982.1:ENST00000513735.5:ENST00000515298.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	42	2	4.80255	4.851084999999999	4.89962	0.0137406	0.00425206	0.0949306	0.0595557
chr5	131745589	131745689	2720230	0	-	0.31	(0.28,0.32]	chr5	255730	5	INTRON	INTRON	FNIP1	ENSG00000217128.13	ENST00000510461.6:ENST00000307954.12:ENST00000307968.11:ENST00000511848.1	protein_coding	protein_coding	protein_coding	protein_coding	0	42	2	4.80255	4.851084999999999	4.89962	0.0137406	0.00425206	0.0949306	0.0595557
chr8	140805542	140805641	4078101	0	-	0.30303	(0.28,0.32]	chr8	370493	15	INTRON	INTRON	PTK2	ENSG00000169398.20	ENST00000696786.1:ENST00000522684.5:ENST00000395218.3:ENST00000519654.5:ENST00000521059.5:ENST00000517887.5:ENST00000519993.5:ENST00000340930.7:ENST00000519419.5:ENST00000524202.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	42	2	4.80255	4.851084999999999	4.89962	0.0137406	0.00425206	0.0949306	0.0595557
chrX	18281700	18281800	7770320	0	-	0.32	(0.28,0.32]	chrX	794172	155	INTRON	INTRON	SCML2	ENSG00000102098.19	ENST00000251900.9:ENST00000665583.1	protein_coding	protein_coding	protein_coding	protein_coding	0	42	2	4.80255	4.851084999999999	4.89962	0.0137406	0.00425206	0.0949306	0.0595557
chrX	24067463	24067563	7630867	0	+	0.29	(0.28,0.32]	chrX	781476	1	SS3_PROX	SS3_PROX:INTRON	EIF2S3	ENSG00000130741.11	ENST00000253039.9	protein_coding	protein_coding	protein_coding	protein_coding	0	42	2	4.80255	4.851084999999999	4.89962	0.0137406	0.00425206	0.0949306	0.0595557
chr8	129927210	129927310	4063036	0	-	0.52	(0.515,0.57]	chr8	369828	143	INTRON	INTRON	CYRIB	ENSG00000153310.21	ENST00000694912.1:ENST00000519824.6:ENST00000523288.5:ENST00000519110.5:ENST00000401979.6:ENST00000523509.5:ENST00000522746.5:ENST00000517654.5:ENST00000522250.5:ENST00000519540.5:ENST00000522941.5:ENST00000519142.5:ENST00000518879.5:ENST00000522702.5:ENST00000521223.5:ENST00000520204.5:ENST00000518283.5:ENST00000523993.5:ENST00000520254.5:ENST00000519020.5:ENST00000518167.5:ENST00000517672.5:ENST00000519070.5:ENST00000522361.1:ENST00000518344.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	38	2	4.51	4.851039999999999	5.19208	0.00809449	3.4344e-4	0.0766625	0.0164987
chr12	93487897	93487984	5189460	0	+	0.413793	(0.408,0.44]	chr12	490853	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MRPL42	ENSG00000198015.14	ENST00000549982.6:ENST00000552217.6:ENST00000393128.8:ENST00000552326.5:ENST00000358678.7:ENST00000547098.5:ENST00000551396.5:ENST00000549561.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	81	2	3.83217	4.85048	5.86879	1.79883e-4	1.0135e-4	0.0116696	0.00906611
chr15	83022478	83022578	6248984	0	-	0.52	(0.515,0.57]	chr15	596378	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	BTBD1:ENSG00000259767	ENSG00000064726.10:ENSG00000259767.1	ENST00000261721.9:ENST00000379403.2:ENST00000559652.5:ENST00000558344.1:ENST00000560450.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA	0	38	2	4.5963	4.85039	5.10448	0.00370287	0.0010345	0.0561162	0.029231300000000002
chr20	50676142	50676242	7355289	0	-	0.55	(0.515,0.57]	chr20	750067	394	INTRON	INTRON	RIPOR3	ENSG00000042062.13	ENST00000327979.8	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.5963	4.85039	5.10448	0.00370287	0.0010345	0.0561162	0.029231300000000002
chr6	35879332	35879432	3088399	0	-	0.51	(0.476,0.515]	chr6	288860	46	INTRON	INTRON	SRPK1	ENSG00000096063.16	ENST00000373825.7:ENST00000423325.6:ENST00000346162.10:ENST00000361690.7:ENST00000510290.5:ENST00000373821.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	108	2	3.35807	4.850175	6.34228	1.37324e-4	7.03585e-6	0.0100829	0.00198457
chr17	3822132	3822213	6707958	0	-	0.419753	(0.408,0.44]	chr17	656996	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	NCBP3	ENSG00000074356.17	ENST00000389005.6:ENST00000574911.5:ENST00000575815.5:ENST00000574379.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	87	2	3.75882	4.85012	5.94142	4.04678e-4	1.51568e-5	0.0185763	0.00293131
chr7	128316676	128316772	3634973	0	-	0.427083	(0.408,0.44]	chr7	337835	13	INTRON	INTRON	RBM28	ENSG00000106344.8	ENST00000223073.6:ENST00000481788.1:ENST00000415472.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	87	2	3.75882	4.85012	5.94142	4.04678e-4	1.51568e-5	0.0185763	0.00293131
chr20	21330380	21330480	7248412	0	+	0.34	(0.32,0.35]	chr20	735901	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	XRN2	ENSG00000088930.8	ENST00000377191.5	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	4.76501	4.849629999999999	4.93425	0.0114287	0.00281048	0.0886611	0.0488779
chr4	123141772	123141872	2037832	0	+	0.33	(0.32,0.35]	chr4	202384	396	INTRON	INTRON	SPATA5	ENSG00000145375.9	ENST00000675612.1:ENST00000274008.5	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	4.76501	4.849629999999999	4.93425	0.0114287	0.00281048	0.0886611	0.0488779
chr6	37258870	37258969	2855321	0	+	0.343434	(0.32,0.35]	chr6	269945	5	INTRON	INTRON	TBC1D22B	ENSG00000065491.8	ENST00000373491.3	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	4.76501	4.849629999999999	4.93425	0.0114287	0.00281048	0.0886611	0.0488779
chr12	76041660	76041759	5369761	0	-	0.393939	(0.378,0.408]	chr12	512241	52	UTR3	UTR3:EXON_MRNA	NAP1L1	ENSG00000187109.15	ENST00000618691.5	protein_coding	protein_coding	protein_coding	protein_coding	0	43	2	4.32174	4.849565	5.37739	0.0132362	0.0010014	0.0999551	0.0288906
chr16	2250227	2250325	6431515	0	-	0.357143	(0.35,0.378]	chr16	618769	29	INTRON	INTRON	ECI1	ENSG00000167969.13	ENST00000301729.9:ENST00000562238.5:ENST00000570258.5:ENST00000566379.1:ENST00000563029.5:ENST00000561688.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	115	2	3.18004	4.84955	6.51906	3.8703e-4	7.44219e-6	0.0177751	0.00205207
chr15	58603697	58603797	6192036	0	-	0.35	(0.32,0.35]	chr15	589892	36	INTRON	INTRON	ADAM10	ENSG00000137845.15	ENST00000260408.8:ENST00000402627.5:ENST00000561288.1:ENST00000482945.5:ENST00000396136.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	41	2	4.83287	4.849545	4.86622	0.0095071	0.00354075	0.0817766	0.0546236
chr17	31888221	31888314	6752780	0	-	0.344086	(0.32,0.35]	chr17	663789	1	INTRON	INTRON	UTP6	ENSG00000108651.10	ENST00000261708.9:ENST00000583408.5:ENST00000490218.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	41	2	4.83287	4.849545	4.86622	0.0095071	0.00354075	0.0817766	0.0546236
chr12	57747680	57747778	5148494	0	+	0.285714	(0.28,0.32]	chr12	487107	5	UTR3	UTR3:EXON_MRNA	TSPAN31	ENSG00000135452.10	ENST00000547992.5:ENST00000257910.8:ENST00000546993.5:ENST00000550791.1:ENST00000546922.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	42	2	4.83165	4.84948	4.86731	0.0116253	0.00527257	0.0889104	0.0656295
chr13	50449418	50449518	5494678	0	+	0.31	(0.28,0.32]	chr13	526158	155	INTRON	INTRON	DLEU1	ENSG00000176124.15	ENST00000467721.5:ENST00000468522.5:ENST00000490577.5:ENST00000491341.5:ENST00000491615.5:ENST00000463474.7:ENST00000468168.5:ENST00000476738.5:ENST00000461527.7:ENST00000485007.5:ENST00000475913.5:ENST00000470726.7:ENST00000479420.5:ENST00000474630.6:ENST00000491482.5:ENST00000647700.1:ENST00000484869.6:ENST00000469095.6:ENST00000462427.2:ENST00000470593.5:ENST00000472136.5:ENST00000498557.5:ENST00000460525.6	lncRNA	lncRNA	lncRNA	lncRNA	0	42	2	4.83165	4.84948	4.86731	0.0116253	0.00527257	0.0889104	0.0656295
chr16	8025523	8025623	6440764	0	-	0.3	(0.28,0.32]	chr16	620351	179	INTRON	INTRON	ENSG00000260289	ENSG00000260289.2	ENST00000670665.1:ENST00000654046.1:ENST00000567103.2	lncRNA	lncRNA	lncRNA	lncRNA	0	42	2	4.83165	4.84948	4.86731	0.0116253	0.00527257	0.0889104	0.0656295
chr17	37249659	37249756	6761450	0	-	0.28866000000000003	(0.28,0.32]	chr17	664854	6	INTRON	INTRON	ACACA	ENSG00000278540.5	ENST00000616317.5:ENST00000614428.4:ENST00000612895.4:ENST00000617649.4:ENST00000613146.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	42	2	4.83165	4.84948	4.86731	0.0116253	0.00527257	0.0889104	0.0656295
chr22	35132259	35132359	7580077	0	-	0.32	(0.28,0.32]	chr22	775756	118	INTRON	INTRON	LINC01399	ENSG00000233080.3	ENST00000423311.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	0	42	2	4.83165	4.84948	4.86731	0.0116253	0.00527257	0.0889104	0.0656295
chr12	98599003	98599103	5199042	0	+	0.5	(0.476,0.515]	chr12	491868	3	SS5_PROX	SS5_PROX:INTRON	SLC25A3	ENSG00000075415.15	ENST00000401722.7:ENST00000188376.9:ENST00000551917.5:ENST00000546766.5:ENST00000228318.8:ENST00000552981.6:ENST00000551123.5:ENST00000549338.5:ENST00000548847.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	83	2	3.53895	4.849055	6.15916	0.00075485700000000005	1.89343e-5	0.0251966	0.00354138
chr2	99408221	99408312	1189037	0	-	0.340659	(0.32,0.35]	chr2	127616	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	REV1	ENSG00000135945.10	ENST00000393445.7:ENST00000258428.8:ENST00000413697.5:ENST00000482595.5:ENST00000465835.5:ENST00000438366.1:ENST00000477121.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	45	2	4.17181	4.848715	5.52562	0.04531	2.76065e-4	0.149888	0.0147997
chr19	34455250	34455348	7053399	0	+	0.397959	(0.378,0.408]	chr19	703551	3	INTRON	INTRON	UBA2	ENSG00000126261.13	ENST00000586313.1:ENST00000246548.9:ENST00000439527.6:ENST00000591016.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	40	2	4.58427	4.8487100000000005	5.11315	0.0128325	9.26795e-4	0.0926667	0.0278442
chr7	74735632	74735723	3336048	0	+	0.406593	(0.378,0.408]	chr7	310443	1	SS5_PROX	SS5_PROX:INTRON	GTF2I	ENSG00000263001.8	ENST00000650807.1:ENST00000690345.1:ENST00000573035.6:ENST00000614986.4:ENST00000620879.4:ENST00000621734.4:ENST00000620631.4:ENST00000615596.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	40	2	4.58427	4.8487100000000005	5.11315	0.0128325	9.26795e-4	0.0926667	0.0278442
chr1	223828966	223829066	643209	0	-	0.4	(0.378,0.408]	chr1	75964	30	INTRON	INTRON	TP53BP2	ENSG00000143514.17	ENST00000343537.12:ENST00000391878.6:ENST00000465119.1:ENST00000472180.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	41	2	4.41169	4.84845	5.28521	0.0199606	4.52877e-4	0.109608	0.0192381
chr4	67515384	67515483	2153209	0	-	0.515152	(0.476,0.515]	chr4	211979	3	INTRON	INTRON	CENPC	ENSG00000145241.11	ENST00000273853.11:ENST00000513216.5:ENST00000506882.5:ENST00000510189.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	129	2	3.23673	4.848445	6.46016	5.05074e-5	3.61681e-6	0.00582942	0.0013551
chr6	34904787	34904887	2849427	0	+	0.39	(0.378,0.408]	chr6	269222	148	INTRON	INTRON	ANKS1A	ENSG00000064999.15	ENST00000360359.5:ENST00000649117.1:ENST00000650178.1	protein_coding	protein_coding	protein_coding	protein_coding	0	40	2	4.69169	4.848140000000001	5.00459	0.00432302	0.00371142	0.0599409	0.0535094
chr6	154503567	154503667	3251023	0	-	0.39	(0.378,0.408]	chr6	302076	252	INTRON	INTRON	CNKSR3	ENSG00000153721.19	ENST00000607772.6	protein_coding	protein_coding	protein_coding	protein_coding	0	40	2	4.69169	4.848140000000001	5.00459	0.00432302	0.00371142	0.0599409	0.0535094
chr5	75373645	75373744	2642520	0	-	0.343434	(0.32,0.35]	chr5	251219	53	UTR3	UTR3:EXON_MRNA:INTRON	CERT1	ENSG00000113163.19	ENST00000646172.1:ENST00000644912.1:ENST00000644072.2:ENST00000644445.1:ENST00000357457.9:ENST00000261415.12:ENST00000642809.1:ENST00000647512.2:ENST00000380494.10:ENST00000642556.1:ENST00000646713.1:ENST00000644516.1:ENST00000645866.1:ENST00000645483.1:ENST00000642225.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	88	2	3.85487	4.847775	5.84068	3.015e-4	2.10176e-4	0.0160895	0.0126699
chr21	28963492	28963589	7436390	0	-	0.329897	(0.32,0.35]	chr21	758379	16	INTRON	INTRON	LTN1	ENSG00000198862.14	ENST00000614971.4:ENST00000389194.7:ENST00000361371.10:ENST00000389195.7	protein_coding	protein_coding	protein_coding	protein_coding	1	88	2	3.79033	4.84774	5.90515	2.87593e-4	2.30541e-4	0.0150609	0.013917
chr1	42257524	42257624	431654	0	-	0.4	(0.378,0.408]	chr1	52311	292	INTRON	INTRON	FOXJ3	ENSG00000198815.9	ENST00000372573.5:ENST00000372572.5:ENST00000361776.5:ENST00000545068.5:ENST00000361346.6:ENST00000445886.5	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	4.51854	4.847405	5.17627	0.00748824	0.00208234	0.0772645	0.0411801
chr3	11315993	11316092	1364836	0	+	0.40404	(0.378,0.408]	chr3	143872	1	INTRON	INTRON	ATG7	ENSG00000197548.13	ENST00000693202.1:ENST00000435760.6:ENST00000685771.1:ENST00000354449.7:ENST00000354956.9:ENST00000446450.6:ENST00000488924.5:ENST00000424071.5:ENST00000434066.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	41	2	4.51854	4.847405	5.17627	0.00748824	0.00208234	0.0772645	0.0411801
chr7	103298067	103298163	3373110	0	+	0.40625	(0.378,0.408]	chr7	315697	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PMPCB	ENSG00000105819.14	ENST00000249269.9:ENST00000428154.5:ENST00000456433.5:ENST00000443722.5:ENST00000444457.5:ENST00000498530.5:ENST00000453466.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	41	2	4.51854	4.847405	5.17627	0.00748824	0.00208234	0.0772645	0.0411801
chr15	20438011	20438091	6118231	0	-	0.375	(0.35,0.378]	chr15	582370	2	INTRON	INTRON	HERC2P3	ENSG00000180229.12	ENST00000426501.5:ENST00000428453.5:ENST00000437318.5:ENST00000430598.5:ENST00000429257.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	2	113	2	3.50381	4.847185	6.19056	6.889e-5	3.96164e-5	0.00688351	0.00537148
chr4	159249188	159249288	2074970	0	+	0.29	(0.28,0.32]	chr4	205218	50	INTRON	INTRON	RAPGEF2	ENSG00000109756.10	ENST00000644474.1:ENST00000691494.1:ENST00000505478.5:ENST00000504604.5:ENST00000644902.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	104	2	3.19774	4.84716	6.49658	0.00548491	3.46319e-6	0.0648867	0.00120947
chr14	52715537	52715635	5716782	0	+	0.234694	[0,0.28]	chr14	542993	12	INTRON	INTRON	PSMC6	ENSG00000100519.12	ENST00000612399.4:ENST00000458604.6:ENST00000557240.5:ENST00000445930.7:ENST00000554044.5:ENST00000555339.5:ENST00000556813.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	44	2	4.5461	4.846935	5.14777	0.0365918	0.00311898	0.138959	0.0512673
chr15	80071271	80071371	6071149	0	+	0.27	[0,0.28]	chr15	578304	102	INTRON	INTRON	ZFAND6	ENSG00000086666.19	ENST00000613266.4:ENST00000561060.5:ENST00000559157.5:ENST00000261749.11:ENST00000561012.5:ENST00000564367.5:ENST00000558494.5:ENST00000618205.4:ENST00000560470.5	protein_coding	protein_coding	protein_coding	protein_coding	0	44	2	4.5461	4.846935	5.14777	0.0365918	0.00311898	0.138959	0.0512673
chrX	41101093	41101193	7644218	0	+	0.2	[0,0.28]	chrX	782230	146	INTRON	INTRON	USP9X	ENSG00000124486.14	ENST00000324545.9:ENST00000378308.7	protein_coding	protein_coding	protein_coding	protein_coding	0	44	2	4.5461	4.846935	5.14777	0.0365918	0.00311898	0.138959	0.0512673
chr15	40382935	40382989	6001911	0	+	0.574074	(0.57,1]	chr15	570714	1	CDS	CDS:UTR5:EXON_MRNA	KNSTRN	ENSG00000128944.14	ENST00000249776.13:ENST00000560981.5:ENST00000416151.6:ENST00000559604.1:ENST00000448395.6:ENST00000560321.5:ENST00000608100.5:ENST00000559591.5:ENST00000560220.5:ENST00000561196.5:ENST00000561169.5:ENST00000559304.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	31	2	4.56365	4.84693	5.13021	0.00129848	1.21664e-4	0.0333764	0.00992813
chr1	12361634	12361731	29599	0	+	0.494845	(0.476,0.515]	chr1	3654	27	INTRON	INTRON	VPS13D	ENSG00000048707.15	ENST00000620676.6:ENST00000613099.4:ENST00000011700.10:ENST00000646917.1:ENST00000460333.5:ENST00000646411.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	39	2	4.76827	4.846780000000001	4.92529	0.00600704	0.00180221	0.0674604	0.0392772
chr1	67212787	67212887	140842	0	+	0.48	(0.476,0.515]	chr1	15770	47	INTRON	INTRON	IL23R	ENSG00000162594.16	ENST00000637002.1:ENST00000347310.10:ENST00000425614.3:ENST00000473881.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	39	2	4.76827	4.846780000000001	4.92529	0.00600704	0.00180221	0.0674604	0.0392772
chr1	93310719	93310818	509054	0	-	0.494949	(0.476,0.515]	chr1	59970	7	EXON_LNCRNA	EXON_LNCRNA:INTRON	CCDC18-AS1	ENSG00000223745.8	ENST00000413606.5:ENST00000457025.5:ENST00000451302.6:ENST00000668257.1:ENST00000446528.6:ENST00000415150.5:ENST00000455474.5:ENST00000447577.5:ENST00000414430.5:ENST00000429859.5:ENST00000424517.3:ENST00000427669.5:ENST00000661111.1:ENST00000450843.5:ENST00000440778.5:ENST00000659026.1:ENST00000669506.1:ENST00000657560.1	lncRNA	lncRNA	lncRNA	lncRNA	0	39	2	4.76827	4.846780000000001	4.92529	0.00600704	0.00180221	0.0674604	0.0392772
chr13	79481624	79481724	5515961	0	+	0.48	(0.476,0.515]	chr13	527503	1	SS5_PROX	SS5_PROX:INTRON	NDFIP2	ENSG00000102471.15	ENST00000612570.4:ENST00000218652.12:ENST00000650134.1:ENST00000487865.5:ENST00000465762.5:ENST00000620924.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	39	2	4.76827	4.846780000000001	4.92529	0.00600704	0.00180221	0.0674604	0.0392772
chr2	25841889	25841988	1085172	0	-	0.50505	(0.476,0.515]	chr2	115952	60	INTRON	INTRON	ASXL2	ENSG00000143970.18	ENST00000435504.9:ENST00000336112.9	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	4.76827	4.846780000000001	4.92529	0.00600704	0.00180221	0.0674604	0.0392772
chr3	40526264	40526364	1402477	0	+	0.48	(0.476,0.515]	chr3	147371	4	SS5_PROX	SS5_PROX:INTRON	ZNF621	ENSG00000172888.12	ENST00000310898.5:ENST00000403205.6:ENST00000431278.5:ENST00000339296.10:ENST00000490457.5:ENST00000462161.5:ENST00000453351.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	39	2	4.76827	4.846780000000001	4.92529	0.00600704	0.00180221	0.0674604	0.0392772
chr7	152234716	152234816	3679255	0	-	0.49	(0.476,0.515]	chr7	341561	40	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000683200.1:ENST00000682283.1:ENST00000473186.5:ENST00000679882.1:ENST00000680969.1:ENST00000681033.1:ENST00000679645.1:ENST00000684550.1:ENST00000489110.2:ENST00000681838.1:ENST00000683490.1:ENST00000418673.2:ENST00000684140.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	39	2	4.76827	4.846780000000001	4.92529	0.00600704	0.00180221	0.0674604	0.0392772
chr5	172930293	172930393	2547813	0	+	0.37	(0.35,0.378]	chr5	243242	33	INTRON	INTRON	ERGIC1	ENSG00000113719.17	ENST00000393784.8:ENST00000690799.1:ENST00000686615.1:ENST00000684928.1:ENST00000691612.1:ENST00000687901.1:ENST00000689975.1:ENST00000693299.1:ENST00000687702.1:ENST00000685391.1:ENST00000686955.1:ENST00000692557.1:ENST00000686449.1:ENST00000693572.1:ENST00000519796.5:ENST00000523650.5:ENST00000521392.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	192	2	4.84634	4.84676	4.84718	1.68694e-6	5.00929e-7	8.71081e-4	3.78502e-4
chr19	52278139	52278238	7094772	0	+	0.50505	(0.476,0.515]	chr19	711269	2	INTRON	INTRON	ZNF766	ENSG00000196214.11	ENST00000439461.6:ENST00000593703.1:ENST00000599581.5:ENST00000601711.5:ENST00000593612.1:ENST00000595000.5:ENST00000595149.5:ENST00000600821.5:ENST00000600016.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	39	2	4.83962	4.846705	4.85379	0.00480934	0.00234214	0.0602209	0.0442989
chr2	8801665	8801761	1061665	0	-	0.489583	(0.476,0.515]	chr2	113246	8	INTRON	INTRON	KIDINS220	ENSG00000134313.17	ENST00000569008.2:ENST00000689369.1:ENST00000693394.1:ENST00000689852.1:ENST00000693432.1:ENST00000496383.5:ENST00000256707.8:ENST00000687912.1:ENST00000685097.1:ENST00000473731.5:ENST00000687894.1:ENST00000691030.1:ENST00000686906.1:ENST00000488729.5:ENST00000489024.5:ENST00000459813.2:ENST00000692419.1:ENST00000689531.1:ENST00000686179.1:ENST00000692889.1:ENST00000687240.1:ENST00000690607.1:ENST00000319688.5:ENST00000689114.1:ENST00000685274.1:ENST00000693366.1:ENST00000691349.1:ENST00000693249.1:ENST00000687526.1:ENST00000471275.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	39	2	4.83962	4.846705	4.85379	0.00480934	0.00234214	0.0602209	0.0442989
chr2	38297288	38297377	1098522	0	-	0.337079	(0.32,0.35]	chr2	117795	2	INTRON	INTRON	ATL2	ENSG00000119787.14	ENST00000378954.9:ENST00000406122.5:ENST00000405384.6:ENST00000402054.5:ENST00000419554.6:ENST00000651368.1:ENST00000452935.6:ENST00000629272.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	88	2	3.75694	4.846640000000001	5.93634	3.37248e-4	2.02056e-4	0.0163178	0.0129814
chr19	9577527	9577626	7132912	0	-	0.323232	(0.32,0.35]	chr19	718825	81	INTRON	INTRON	ZNF121	ENSG00000197961.12	ENST00000320451.7:ENST00000586602.5	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	4.6938	4.84651	4.99922	0.0137794	0.00223907	0.0949306	0.0435144
chr8	127816427	127816527	3860262	0	+	0.35	(0.32,0.35]	chr8	355387	2	SS3_PROX	SS3_PROX:INTRON	PVT1	ENSG00000249859.13	ENST00000667305.1:ENST00000690350.1:ENST00000653522.1:ENST00000664214.1:ENST00000664139.1:ENST00000661830.1:ENST00000657289.1:ENST00000504719.7:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000656880.1:ENST00000660200.1:ENST00000669132.1:ENST00000657211.1:ENST00000653845.1:ENST00000517525.2:ENST00000665856.1:ENST00000651587.1:ENST00000692980.1:ENST00000666353.1:ENST00000657183.1:ENST00000654324.1:ENST00000658556.1:ENST00000657693.1:ENST00000666080.1:ENST00000667539.1:ENST00000521951.1:ENST00000524165.6:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000664293.1:ENST00000657297.1:ENST00000662410.1:ENST00000670795.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000654091.1:ENST00000523328.6:ENST00000657356.1:ENST00000523427.2:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000662061.1:ENST00000667204.1:ENST00000656491.1:ENST00000667714.1:ENST00000654105.1:ENST00000665721.1:ENST00000518528.2:ENST00000669416.1:ENST00000660438.1:ENST00000661160.1:ENST00000659326.1:ENST00000665246.1:ENST00000657384.1:ENST00000666842.1:ENST00000517790.2:ENST00000522963.6:ENST00000654369.1:ENST00000661625.1:ENST00000657596.1:ENST00000664995.1:ENST00000656532.1:ENST00000656168.1:ENST00000661988.1:ENST00000657517.1:ENST00000670714.1:ENST00000669951.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000656693.1:ENST00000668123.1:ENST00000666776.1:ENST00000664299.1:ENST00000669272.1:ENST00000659912.1:ENST00000670532.1:ENST00000660896.1:ENST00000667149.1:ENST00000656396.1:ENST00000523068.2	lncRNA	lncRNA	lncRNA	lncRNA	0	41	2	4.6938	4.84651	4.99922	0.0137794	0.00223907	0.0949306	0.0435144
chr1	174527143	174527243	260803	0	+	0.26	[0,0.28]	chr1	30824	777	INTRON	INTRON	RABGAP1L	ENSG00000152061.24	ENST00000357444.10:ENST00000251507.8:ENST00000681986.1:ENST00000367690.5:ENST00000526253.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	44	2	4.63523	4.846355	5.05748	0.0139836	0.0113653	0.10247	0.0886611
chr16	29585401	29585501	6471454	0	-	0.27	[0,0.28]	chr16	625297	157	INTRON	INTRON	ENSG00000288632:SMG1P2	ENSG00000288632.1:ENSG00000205534.6	ENST00000675579.1:ENST00000566127.1	lncRNA	lncRNA	lncRNA:transcribed_unprocessed_pseudogene	lncRNA:transcribed_unprocessed_pseudogene	0	44	2	4.63523	4.846355	5.05748	0.0139836	0.0113653	0.10247	0.0886611
chr13	98001145	98001245	5520989	0	+	0.34	(0.32,0.35]	chr13	527900	1	INTRON	INTRON	IPO5	ENSG00000065150.21	ENST00000651721.2:ENST00000261574.10:ENST00000357602.7:ENST00000490680.5:ENST00000469360.5	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	4.79482	4.8462499999999995	4.89768	0.00793135	0.00447781	0.076155	0.0610799
chr2	20277186	20277286	1076031	0	-	0.33	(0.32,0.35]	chr2	114960	134	INTRON	INTRON	PUM2	ENSG00000055917.16	ENST00000338086.9:ENST00000361078.7:ENST00000440577.5	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	4.79482	4.8462499999999995	4.89768	0.00793135	0.00447781	0.076155	0.0610799
chr2	171732452	171732552	918174	0	+	0.33	(0.32,0.35]	chr2	101153	22	INTRON	INTRON	DYNC1I2	ENSG00000077380.16	ENST00000340296.8:ENST00000397119.8:ENST00000410079.7:ENST00000508530.5:ENST00000409197.5:ENST00000409317.5:ENST00000409773.5:ENST00000409453.5:ENST00000482454.5:ENST00000479806.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	41	2	4.79482	4.8462499999999995	4.89768	0.00793135	0.00447781	0.076155	0.0610799
chr3	108577522	108577619	1770235	0	-	0.340206	(0.32,0.35]	chr3	179122	8	INTRON	INTRON	CIP2A	ENSG00000163507.15	ENST00000295746.13:ENST00000491772.5:ENST00000481530.5:ENST00000487834.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	41	2	4.79482	4.8462499999999995	4.89768	0.00793135	0.00447781	0.076155	0.0610799
chr7	5505830	5505930	3472859	0	-	0.34	(0.32,0.35]	chr7	324745	2	SS3_PROX	SS3_PROX:INTRON	FBXL18	ENSG00000155034.20	ENST00000415009.5:ENST00000382368.8:ENST00000453700.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	41	2	4.79482	4.8462499999999995	4.89768	0.00793135	0.00447781	0.076155	0.0610799
chr13	99520429	99520529	5527065	0	+	0.51	(0.476,0.515]	chr13	528350	3	SS5_PROX	SS5_PROX:INTRON	TM9SF2	ENSG00000125304.10	ENST00000642475.1:ENST00000376387.5:ENST00000463709.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	41	2	4.34648	4.846185	5.34589	0.0193566	3.224e-4	0.108861	0.0159645
chr16	71786879	71786979	6514255	0	-	0.49	(0.476,0.515]	chr16	631200	119	INTRON	INTRON	AP1G1	ENSG00000166747.13	ENST00000299980.9:ENST00000569748.5:ENST00000393512.7:ENST00000565009.5:ENST00000568327.5:ENST00000450149.6:ENST00000563259.5:ENST00000563104.5:ENST00000569185.5:ENST00000566161.5:ENST00000567583.1:ENST00000565412.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	42	2	4.24501	4.84577	5.44653	0.0247713	2.03754e-4	0.12011	0.0124395
chr22	47708551	47708648	7540132	0	+	0.237113	[0,0.28]	chr22	770713	11	INTRON	INTRON	ENSG00000224271	ENSG00000224271.7	ENST00000664761.1:ENST00000651071.1:ENST00000650683.1:ENST00000651536.1:ENST00000652499.1:ENST00000652656.1:ENST00000652072.1:ENST00000651445.1:ENST00000423737.5:ENST00000650660.1:ENST00000651056.1:ENST00000652611.1:ENST00000652399.1:ENST00000652123.1:ENST00000651311.1:ENST00000651458.1:ENST00000652505.1:ENST00000652702.2:ENST00000652334.1:ENST00000652030.2:ENST00000651403.1:ENST00000652228.1:ENST00000651124.1:ENST00000650972.1:ENST00000651985.1:ENST00000651637.1:ENST00000650924.1:ENST00000651003.1:ENST00000652168.1:ENST00000651948.2:ENST00000651293.1:ENST00000651939.1:ENST00000650787.1:ENST00000651517.1:ENST00000651662.1:ENST00000652690.1:ENST00000651638.1:ENST00000670853.1:ENST00000652750.1:ENST00000652080.1:ENST00000651294.1:ENST00000652164.1:ENST00000651538.1:ENST00000650775.1:ENST00000651983.1:ENST00000651033.1:ENST00000651584.1:ENST00000650884.1:ENST00000651270.1	lncRNA	lncRNA	lncRNA	lncRNA	1	110	2	3.33621	4.84537	6.35453	0.00427056	2.13329e-5	0.0573912	0.00357657
chr18	9172800	9172899	6869291	0	+	0.313131	(0.28,0.32]	chr18	680561	346	INTRON	INTRON	ANKRD12	ENSG00000101745.17	ENST00000585234.5:ENST00000262126.9:ENST00000577992.1:ENST00000540578.6:ENST00000581635.5:ENST00000400020.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	48	2	4.03345	4.8452	5.65695	0.0704058	2.41184e-4	0.184298	0.0136674
chr10	21567788	21567887	4404750	0	+	0.464646	(0.44,0.476]	chr10	406446	96	INTRON	INTRON	MLLT10	ENSG00000078403.17	ENST00000651097.1:ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000650772.1:ENST00000651298.1:ENST00000495130.5:ENST00000377059.7:ENST00000476557.5:ENST00000462999.5:ENST00000430455.2:ENST00000479634.1:ENST00000480415.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	39	2	4.76068	4.84518	4.92968	0.00653414	0.00171443	0.0699952	0.0381936
chrX	376130	376229	7742086	0	-	0.454545	(0.44,0.476]	chrX	792802	22	INTRON	INTRON	PPP2R3B	ENSG00000167393.18	ENST00000390665.9:ENST00000445792.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	39	2	4.76068	4.84518	4.92968	0.00653414	0.00171443	0.0699952	0.0381936
chr16	18074401	18074501	6453377	0	-	0.3	(0.28,0.32]	chr16	621960	706	INTRON	INTRON	ENSG00000259929:ENSG00000260242	ENSG00000259929.5:ENSG00000260242.1	ENST00000567304.1:ENST00000563866.1	lncRNA	lncRNA	lncRNA	lncRNA	0	42	2	4.66359	4.8451249999999995	5.02666	0.0193496	0.0027935	0.108861	0.0488769
chr8	103043800	103043900	3821745	0	+	0.3	(0.28,0.32]	chr8	353611	10	INTRON	INTRON	ATP6V1C1	ENSG00000155097.12	ENST00000395862.7:ENST00000518857.5:ENST00000518738.2:ENST00000521514.5	protein_coding	protein_coding	protein_coding	protein_coding	0	42	2	4.66359	4.8451249999999995	5.02666	0.0193496	0.0027935	0.108861	0.0488769
chr9	131185441	131185538	4216244	0	+	0.309278	(0.28,0.32]	chr9	386631	12	EXON_MRNA	EXON_MRNA:INTRON	NUP214	ENSG00000126883.19	ENST00000695497.1:ENST00000695498.1:ENST00000695496.1:ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000525980.5:ENST00000526346.5:ENST00000531929.5:ENST00000651334.1:ENST00000524578.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	42	2	4.66359	4.8451249999999995	5.02666	0.0193496	0.0027935	0.108861	0.0488769
chr1	114446819	114446919	527250	0	-	0.47	(0.44,0.476]	chr1	62137	127	INTRON	INTRON	TRIM33	ENSG00000197323.12	ENST00000358465.7:ENST00000369543.6:ENST00000448034.5	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	4.83202	4.845095000000001	4.85817	0.00525002	0.00223254	0.0633615	0.0435144
chr22	19343396	19343495	7553517	0	-	0.525253	(0.515,0.57]	chr22	772184	115	INTRON	INTRON	HIRA	ENSG00000100084.14	ENST00000263208.5:ENST00000340170.8	protein_coding	protein_coding	protein_coding	protein_coding	1	74	2	3.8052	4.845055	5.88491	1.67082e-4	2.75856e-5	0.0111796	0.00430942
chr7	152204133	152204228	3678936	0	-	0.536842	(0.515,0.57]	chr7	341517	6	UTR3	UTR3:EXON_MRNA:INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000683200.1:ENST00000682283.1:ENST00000473186.5:ENST00000679882.1:ENST00000680969.1:ENST00000681033.1:ENST00000682176.1:ENST00000679645.1:ENST00000683254.1:ENST00000684550.1:ENST00000489110.2:ENST00000681838.1:ENST00000683490.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	74	2	3.8052	4.845055	5.88491	1.67082e-4	2.75856e-5	0.0111796	0.00430942
chr15	65610748	65610817	6208402	0	-	0.318841	(0.28,0.32]	chr15	592418	1	UTR3	UTR3:UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	INTS14	ENSG00000138614.16	ENST00000573314.5:ENST00000313182.7:ENST00000652388.1:ENST00000567744.5:ENST00000431261.6:ENST00000569491.5:ENST00000420799.7:ENST00000442903.3:ENST00000564306.5:ENST00000561769.1:ENST00000567923.2:ENST00000568573.1:ENST00000567940.1:ENST00000562830.1:ENST00000569565.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	42	2	4.76031	4.844799999999999	4.92929	0.0098607	0.00656106	0.0838128	0.0735539
chr11	63696460	63696559	4800063	0	+	0.454545	(0.44,0.476]	chr11	444936	143	INTRON	INTRON	RTN3	ENSG00000133318.14	ENST00000341307.6:ENST00000356000.7:ENST00000542238.5:ENST00000538995.1:ENST00000339997.8:ENST00000540798.5:ENST00000537981.5:ENST00000377819.10:ENST00000536011.5:ENST00000543123.1:ENST00000543552.5:ENST00000545432.5:ENST00000338850.5:ENST00000354497.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	178	2	2.84246	4.84431	6.84616	3.61441e-5	4.25088e-7	0.00482177	3.70271e-4
chr5	69356453	69356552	2636981	0	-	0.444444	(0.44,0.476]	chr5	250479	1	INTRON	INTRON	AK6	ENSG00000085231.14	ENST00000380822.9:ENST00000502819.5:ENST00000380818.7:ENST00000512561.5:ENST00000618980.1	protein_coding	protein_coding	protein_coding	protein_coding	0	42	2	4.23755	4.84426	5.45097	0.0263357	1.90652e-4	0.122221	0.0120089
chr3	33404101	33404201	1651339	0	-	0.49	(0.476,0.515]	chr3	169355	8	INTRON	INTRON	UBP1	ENSG00000153560.12	ENST00000283629.8:ENST00000447368.6:ENST00000283628.9:ENST00000486388.5:ENST00000411650.5:ENST00000467613.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	84	2	3.44784	4.84417	6.2405	0.00113238	1.22785e-5	0.0308465	0.00278588
chrX	136929568	136929667	7727665	0	+	0.515152	(0.476,0.515]	chrX	790772	38	INTRON	INTRON	TM9SF5P	ENSG00000234062.9	ENST00000650669.2:ENST00000687469.1:ENST00000431464.6:ENST00000685550.1:ENST00000685929.1:ENST00000424306.5:ENST00000687978.1:ENST00000688713.1:ENST00000693626.1:ENST00000686432.1:ENST00000693698.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	1	84	2	3.44784	4.84417	6.2405	0.00113238	1.22785e-5	0.0308465	0.00278588
chr18	801130	801229	6940595	0	-	0.363636	(0.35,0.378]	chr18	686527	31	INTRON	INTRON	YES1	ENSG00000176105.14	ENST00000584307.5:ENST00000314574.5:ENST00000577611.1:ENST00000581960.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	123	2	3.26464	4.844085	6.42353	4.0384e-4	1.52654e-6	0.0185763	7.40003e-4
chr2	206159894	206159979	990827	0	+	0.6	(0.57,1]	chr2	106401	1	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	EEF1B2	ENSG00000114942.14	ENST00000236957.9:ENST00000392221.5:ENST00000445505.5:ENST00000479587.1:ENST00000429769.5:ENST00000460760.1:ENST00000392222.7:ENST00000415904.1:ENST00000455150.1:ENST00000435123.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	141	2	2.95102	4.84387	6.73672	8.41947e-7	1.03575e-9	5.20059e-4	5.17777e-6
chr19	10799750	10799847	7014608	0	+	0.546392	(0.515,0.57]	chr19	697005	8	INTRON	INTRON	DNM2	ENSG00000079805.19	ENST00000683738.1:ENST00000682285.1:ENST00000355667.11:ENST00000389253.9:ENST00000585892.5:ENST00000359692.10:ENST00000408974.8:ENST00000587830.2:ENST00000587329.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	37	2	4.76244	4.843585	4.92473	0.00362147	0.00108255	0.0533855	0.0300133
chr22	50202482	50202580	7544027	0	+	0.530612	(0.515,0.57]	chr22	770973	5	INTRON	INTRON	SELENOO	ENSG00000073169.15	ENST00000380903.7	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	4.76244	4.843585	4.92473	0.00362147	0.00108255	0.0533855	0.0300133
chr6	110809365	110809465	3190397	0	-	0.52	(0.515,0.57]	chr6	297127	351	INTRON	INTRON	CDK19	ENSG00000155111.15	ENST00000323817.7:ENST00000368911.8:ENST00000413605.6:ENST00000457688.5:ENST00000460913.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	37	2	4.76244	4.843585	4.92473	0.00362147	0.00108255	0.0533855	0.0300133
chr12	104534382	104534482	5211458	0	+	0.47	(0.44,0.476]	chr12	493315	765	INTRON	INTRON	CHST11	ENSG00000171310.11	ENST00000303694.6:ENST00000547956.1:ENST00000549260.5:ENST00000546689.1	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	4.43525	4.84352	5.25179	0.00897296	0.00124521	0.0849778	0.0322969
chr7	152172338	152172438	3678599	0	-	0.46	(0.44,0.476]	chr7	341450	6	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000360104.8:ENST00000262189.11:ENST00000680877.1:ENST00000679560.1:ENST00000683120.1:ENST00000679393.1:ENST00000683200.1:ENST00000684261.1:ENST00000682283.1:ENST00000473186.5:ENST00000679882.1:ENST00000683397.1:ENST00000684307.1:ENST00000683625.1:ENST00000684398.1:ENST00000683670.1:ENST00000680969.1:ENST00000681033.1:ENST00000682176.1:ENST00000683159.1:ENST00000558665.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	41	2	4.43525	4.84352	5.25179	0.00897296	0.00124521	0.0849778	0.0322969
chr11	62723323	62723403	4960959	0	-	0.525	(0.515,0.57]	chr11	466806	4	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HNRNPUL2-BSCL2:HNRNPUL2	ENSG00000234857.2:ENSG00000214753.4	ENST00000403734.2:ENST00000301785.7:ENST00000540127.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	37	2	4.83764	4.843500000000001	4.84936	0.00279527	0.00146032	0.0469265	0.0349875
chr15	82393737	82393836	6075919	0	+	0.535354	(0.515,0.57]	chr15	578731	14	INTRON	INTRON	UBE2Q2P2	ENSG00000259429.5	ENST00000618775.4:ENST00000613592.4	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	37	2	4.83764	4.843500000000001	4.84936	0.00279527	0.00146032	0.0469265	0.0349875
chr1	15547371	15547470	33007	0	+	0.494949	(0.476,0.515]	chr1	4007	1	INTRON	INTRON	DNAJC16	ENSG00000116138.13	ENST00000375849.5:ENST00000475133.5:ENST00000616884.4:ENST00000375838.5:ENST00000375847.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	39	2	4.6932	4.843310000000001	4.99342	0.00753088	0.00139274	0.074841	0.0341261
chr1	186405483	186405582	277852	0	+	0.292929	(0.28,0.32]	chr1	32482	61	INTRON	INTRON	ODR4	ENSG00000157181.16	ENST00000367470.8:ENST00000287859.11:ENST00000419367.8:ENST00000478571.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	45	2	4.33863	4.84314	5.34765	0.0207276	0.00287138	0.122348	0.0474836
chr17	42298264	42298362	6611125	0	+	0.479592	(0.476,0.515]	chr17	643999	21	INTRON	INTRON	STAT5A	ENSG00000126561.18	ENST00000345506.8:ENST00000546010.6:ENST00000677893.1:ENST00000676631.1:ENST00000590726.7:ENST00000678903.1:ENST00000590949.6:ENST00000676585.1:ENST00000588868.5:ENST00000677301.1	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	4.77856	4.843085	4.90761	0.00386428	0.00305743	0.0542786	0.0509893
chr19	13134201	13134300	7022809	0	+	0.50505	(0.476,0.515]	chr19	698372	19	INTRON	INTRON	NACC1	ENSG00000160877.6	ENST00000586171.2:ENST00000292431.5	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	4.77856	4.843085	4.90761	0.00386428	0.00305743	0.0542786	0.0509893
chr7	99133659	99133759	3583041	0	-	0.37	(0.35,0.378]	chr7	333710	121	INTRON	INTRON	SMURF1	ENSG00000198742.10	ENST00000361368.7:ENST00000361125.1:ENST00000472627.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	40	2	4.79079	4.84301	4.89523	0.00846427	0.00253947	0.0776969	0.0465056
chr15	65777660	65777759	6209650	0	-	0.272727	[0,0.28]	chr15	592617	104	INTRON	INTRON	DENND4A	ENSG00000174485.16	ENST00000443035.8:ENST00000431932.6:ENST00000564674.5:ENST00000568515.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	102	2	4.0567	4.842315	5.62793	0.0022037	1.31789e-4	0.0417893	0.00990153
chr12	24886995	24887094	5297286	0	-	0.343434	(0.32,0.35]	chr12	503865	52	INTRON	INTRON	BCAT1	ENSG00000060982.15	ENST00000261192.12:ENST00000538118.5:ENST00000342945.9:ENST00000539282.5:ENST00000539780.5:ENST00000544418.1:ENST00000546285.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	130	2	2.94814	4.842255	6.73637	0.00182605	3.80962e-7	0.0386492	3.17977e-4
chr1	8590284	8590384	371503	0	-	0.43	(0.408,0.44]	chr1	43518	1	SS5_PROX	SS5_PROX:INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000400907.6:ENST00000656437.1:ENST00000659924.1:ENST00000480342.5:ENST00000469251.1:ENST00000514428.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	39	2	4.75398	4.84211	4.93024	0.00703931	0.00170369	0.0718189	0.0381936
chr1	226280732	226280832	647567	0	-	0.42	(0.408,0.44]	chr1	76721	24	INTRON	INTRON	LIN9	ENSG00000183814.16	ENST00000460719.5:ENST00000366808.6:ENST00000328205.9:ENST00000681046.1:ENST00000481685.1	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	4.75398	4.84211	4.93024	0.00703931	0.00170369	0.0718189	0.0381936
chr18	62717759	62717858	6922587	0	+	0.424242	(0.408,0.44]	chr18	685172	1	INTRON	INTRON	PHLPP1	ENSG00000081913.14	ENST00000262719.10	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	4.75398	4.84211	4.93024	0.00703931	0.00170369	0.0718189	0.0381936
chr9	94349002	94349102	4162021	0	+	0.44	(0.408,0.44]	chr9	379476	96	INTRON	INTRON	ENSG00000232063	ENSG00000232063.2	ENST00000454869.2	lncRNA	lncRNA	lncRNA	lncRNA	0	39	2	4.75398	4.84211	4.93024	0.00703931	0.00170369	0.0718189	0.0381936
chr4	67635352	67635452	2153788	0	-	0.24	[0,0.28]	chr4	212093	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	UBA6	ENSG00000033178.13	ENST00000322244.10:ENST00000505673.2	protein_coding	protein_coding	protein_coding	protein_coding	0	47	2	4.20106	4.842065	5.48307	0.0695895	9.62922e-4	0.184298	0.0285195
chr14	55273886	55273984	5725818	0	+	0.581633	(0.57,1]	chr14	543446	12	INTRON	INTRON	FBXO34	ENSG00000178974.11	ENST00000681400.1:ENST00000681904.1:ENST00000679934.1:ENST00000681074.1:ENST00000680682.1:ENST00000680658.1:ENST00000313833.5:ENST00000554940.1:ENST00000440021.1:ENST00000555087.1:ENST00000557647.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	71	2	3.50161	4.842015	6.18242	3.17447e-5	1.22751e-7	0.00449886	1.67176e-4
chr1	26251191	26251290	49657	0	+	0.434343	(0.408,0.44]	chr1	6205	65	INTRON	INTRON	CEP85	ENSG00000130695.16	ENST00000451429.8:ENST00000640292.2:ENST00000252992.8	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	4.8253	4.84201	4.85872	0.0056738	0.00221911	0.0653997	0.0435144
chr1	156787773	156787873	232141	0	+	0.43	(0.408,0.44]	chr1	27494	2	INTRON	INTRON	PRCC	ENSG00000143294.15	ENST00000491853.5:ENST00000271526.9:ENST00000526188.5:ENST00000454659.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	39	2	4.8253	4.84201	4.85872	0.0056738	0.00221911	0.0653997	0.0435144
chr10	67973982	67974081	4636910	0	-	0.424242	(0.408,0.44]	chr10	426348	68	INTRON	INTRON	HERC4	ENSG00000148634.16	ENST00000277817.10:ENST00000373700.9:ENST00000412272.6:ENST00000395198.7:ENST00000473533.6:ENST00000427635.6:ENST00000460168.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	39	2	4.8253	4.84201	4.85872	0.0056738	0.00221911	0.0653997	0.0435144
chr3	33395861	33395961	1651250	0	-	0.43	(0.408,0.44]	chr3	169328	3	SS5_PROX	SS5_PROX:INTRON	UBP1	ENSG00000153560.12	ENST00000283629.8:ENST00000492136.1:ENST00000447368.6:ENST00000466441.5:ENST00000283628.9:ENST00000486388.5:ENST00000464787.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	39	2	4.8253	4.84201	4.85872	0.0056738	0.00221911	0.0653997	0.0435144
chr1	29000010	29000109	59816	0	+	0.464646	(0.44,0.476]	chr1	7649	23	INTRON	INTRON	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000647918.1:ENST00000646800.1:ENST00000644342.1:ENST00000646189.1:ENST00000482464.6:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000646260.1:ENST00000373798.5:ENST00000644600.1:ENST00000649674.1:ENST00000643173.1:ENST00000343067.9:ENST00000644780.1:ENST00000650265.1:ENST00000648181.1:ENST00000643604.1:ENST00000648891.1:ENST00000373797.2:ENST00000349460.9:ENST00000645184.1:ENST00000645111.1:ENST00000643302.1:ENST00000645999.1:ENST00000642643.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	39	2	4.68564	4.84173	4.99782	0.00816201	0.0013223	0.0766625	0.0333932
chr9	94375427	94375526	4162172	0	+	0.464646	(0.44,0.476]	chr9	379485	1	INTRON	INTRON	MFSD14B	ENSG00000148110.17	ENST00000375344.8	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	4.68564	4.84173	4.99782	0.00816201	0.0013223	0.0766625	0.0333932
chr14	68054277	68054377	5767720	0	+	0.28	[0,0.28]	chr14	547066	536	INTRON	INTRON	RAD51B	ENSG00000182185.19	ENST00000487861.5:ENST00000471583.6:ENST00000479335.5:ENST00000487270.5:ENST00000488612.5:ENST00000553595.5:ENST00000497460.5:ENST00000492236.5:ENST00000554244.5:ENST00000478014.5:ENST00000469165.6:ENST00000460526.5:ENST00000468382.5:ENST00000557045.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	45	2	4.47254	4.84154	5.21054	0.020991	0.00758653	0.122348	0.0749063
chr7	119729637	119729737	3628634	0	-	0.27	[0,0.28]	chr7	337319	243	INTRON	INTRON	LINC02476	ENSG00000225546.6	ENST00000660268.1:ENST00000431071.5	lncRNA	lncRNA	lncRNA	lncRNA	3	161	2	3.01587	4.84152	6.66717	3.5739e-4	4.28223e-5	0.0169202	0.00556133
chr17	44862412	44862512	6781161	0	-	0.45	(0.44,0.476]	chr17	668791	3	SS5_PROX	SS5_PROX:INTRON	EFTUD2	ENSG00000108883.13	ENST00000426333.7:ENST00000586276.5:ENST00000592576.5:ENST00000591382.5:ENST00000590367.5:ENST00000402521.7:ENST00000585616.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	39	2	4.78293	4.841465	4.9	0.00423315	0.00292033	0.0572185	0.0494641
chr10	68389583	68389681	4638977	0	-	0.377551	(0.35,0.378]	chr10	426582	31	INTRON	INTRON	RUFY2	ENSG00000204130.14	ENST00000466493.5:ENST00000602465.6:ENST00000388768.6:ENST00000399200.7:ENST00000454950.6:ENST00000472394.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	40	2	4.71953	4.841415	4.9633	0.0103314	0.00198929	0.0850389	0.0411469
chr17	51179984	51180082	6797046	0	-	0.367347	(0.35,0.378]	chr17	671030	27	UTR3	UTR3:EXON_MRNA	MBTD1	ENSG00000011258.16	ENST00000586178.6:ENST00000415868.5	protein_coding	protein_coding	protein_coding	protein_coding	0	40	2	4.71953	4.841415	4.9633	0.0103314	0.00198929	0.0850389	0.0411469
chr5	134619003	134619098	2727859	0	-	0.368421	(0.35,0.378]	chr5	256722	3	INTRON	INTRON	SAR1B	ENSG00000152700.14	ENST00000402673.7:ENST00000507419.5:ENST00000439578.5:ENST00000503318.5:ENST00000505758.5:ENST00000502286.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	40	2	4.71953	4.841415	4.9633	0.0103314	0.00198929	0.0850389	0.0411469
chr1	42672558	42672657	83897	0	+	0.373737	(0.35,0.378]	chr1	11005	35	INTRON	INTRON	PPIH	ENSG00000171960.12	ENST00000372550.6:ENST00000678038.1:ENST00000677900.1:ENST00000676675.1:ENST00000304979.8:ENST00000678193.1:ENST00000678333.1:ENST00000677307.1:ENST00000677356.1:ENST00000679245.1:ENST00000677312.1:ENST00000461351.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	45	2	4.19022	4.8414	5.49258	0.0209891	8.19894e-4	0.122348	0.0264086
chr12	6495425	6495525	5069233	0	+	0.36	(0.35,0.378]	chr12	478655	2	SS5_PROX	SS5_PROX:INTRON	NCAPD2	ENSG00000010292.13	ENST00000541399.1:ENST00000539714.5:ENST00000382457.8:ENST00000539084.5:ENST00000315579.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	40	2	4.82377	4.841234999999999	4.8587	0.00695662	0.00325499	0.0718189	0.0524329
chr20	35486639	35486739	7262327	0	+	0.37	(0.35,0.378]	chr20	737887	61	INTRON	INTRON	CEP250	ENSG00000126001.16	ENST00000397527.6	protein_coding	protein_coding	protein_coding	protein_coding	0	40	2	4.82377	4.841234999999999	4.8587	0.00695662	0.00325499	0.0718189	0.0524329
chrX	14839595	14839693	7766145	0	-	0.377551	(0.35,0.378]	chrX	793658	30	INTRON	INTRON	FANCB	ENSG00000181544.16	ENST00000696351.1:ENST00000696352.1:ENST00000696353.1:ENST00000696354.1:ENST00000696322.1:ENST00000452869.2:ENST00000696311.1:ENST00000643728.2:ENST00000696355.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	40	2	4.82377	4.841234999999999	4.8587	0.00695662	0.00325499	0.0718189	0.0524329
chr12	56608377	56608472	5335417	0	-	0.326316	(0.32,0.35]	chr12	510035	13	INTRON	INTRON	BAZ2A	ENSG00000076108.12	ENST00000379441.7:ENST00000549884.6:ENST00000551812.5:ENST00000549763.1:ENST00000547650.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	41	2	4.61889	4.84014	5.06139	0.0166646	0.00179023	0.102621	0.0392749
chr5	134168129	134168226	2726266	0	-	0.340206	(0.32,0.35]	chr5	256494	5	INTRON	INTRON	SKP1	ENSG00000113558.19	ENST00000353411.11:ENST00000522552.5:ENST00000521216.5:ENST00000517625.5:ENST00000523966.5:ENST00000522855.5:ENST00000328392.10:ENST00000519054.5:ENST00000519321.5:ENST00000520417.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	41	2	4.61889	4.84014	5.06139	0.0166646	0.00179023	0.102621	0.0392749
chr10	22700437	22700537	4580363	0	-	0.52	(0.515,0.57]	chr10	422046	59	INTRON	INTRON	PIP4K2A	ENSG00000150867.14	ENST00000376573.9:ENST00000545335.5	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	4.6831	4.839725	4.99635	0.00471288	8.06602e-4	0.0600108	0.0258804
chr1	180975085	180975184	595863	0	-	0.343434	(0.32,0.35]	chr1	71216	25	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	STX6	ENSG00000135823.14	ENST00000542060.5:ENST00000258301.6:ENST00000469135.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	41	2	4.7197	4.839705	4.95971	0.00663522	0.00568521	0.0703181	0.0678837
chr2	44435995	44436095	766080	0	+	0.34	(0.32,0.35]	chr2	86775	350	INTRON	INTRON	CAMKMT	ENSG00000143919.15	ENST00000378494.8:ENST00000402247.5:ENST00000407131.5:ENST00000403853.7:ENST00000428993.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	41	2	4.7197	4.839705	4.95971	0.00663522	0.00568521	0.0703181	0.0678837
chr4	152496608	152496708	2274695	0	-	0.34	(0.32,0.35]	chr4	221124	68	INTRON	INTRON	FBXW7	ENSG00000109670.16	ENST00000281708.10:ENST00000603548.6:ENST00000604872.6:ENST00000647166.1:ENST00000643834.1:ENST00000642901.1	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	4.7197	4.839705	4.95971	0.00663522	0.00568521	0.0703181	0.0678837
chr20	50547369	50547469	7286284	0	+	0.49	(0.476,0.515]	chr20	741241	364	INTRON	INTRON	PTPN1	ENSG00000196396.10	ENST00000541713.5:ENST00000371621.5	protein_coding	protein_coding	protein_coding	protein_coding	0	40	2	4.44128	4.839485	5.23769	0.0151924	5.17244e-4	0.0994339	0.0203753
chr6	158059637	158059737	3017800	0	+	0.51	(0.476,0.515]	chr6	281514	1	SS5_PROX	SS5_PROX:INTRON	SYNJ2	ENSG00000078269.15	ENST00000355585.9:ENST00000640338.1:ENST00000638626.1:ENST00000485863.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	40	2	4.44128	4.839485	5.23769	0.0151924	5.17244e-4	0.0994339	0.0203753
chr12	1304897	1304997	5060989	0	+	0.57	(0.515,0.57]	chr12	477741	145	INTRON	INTRON	ERC1	ENSG00000082805.21	ENST00000543086.7:ENST00000360905.9:ENST00000690948.1:ENST00000542302.6:ENST00000546231.6:ENST00000347735.10:ENST00000397203.7:ENST00000440394.7:ENST00000545948.5:ENST00000589028.6:ENST00000355446.9:ENST00000538971.6:ENST00000588412.5:ENST00000543263.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	37	2	4.76984	4.83948	4.90912	0.0021669	0.00198034	0.0417866	0.0411469
chr6	17697496	17697596	3066120	0	-	0.52	(0.515,0.57]	chr6	284872	85	INTRON	INTRON	NUP153	ENSG00000124789.12	ENST00000613258.4:ENST00000537253.5:ENST00000262077.3	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	4.76984	4.83948	4.90912	0.0021669	0.00198034	0.0417866	0.0411469
chr8	63211096	63211196	3773419	0	+	0.3	(0.28,0.32]	chr8	349952	15	UTR3	UTR3:EXON_MRNA	YTHDF3	ENSG00000185728.17	ENST00000617200.1:ENST00000623280.3:ENST00000539294.6:ENST00000517371.5:ENST00000615676.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	43	2	4.4263	4.838855000000001	5.25141	0.0330296	0.00125199	0.133816	0.0328543
chr11	67429890	67429988	4815099	0	+	0.540816	(0.515,0.57]	chr11	448443	4	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	RPS6KB2	ENSG00000175634.15	ENST00000530623.5:ENST00000556575.5:ENST00000312629.10:ENST00000524814.5:ENST00000524934.5:ENST00000420069.3:ENST00000528964.5:ENST00000525088.5:ENST00000525996.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	39	2	4.31326	4.83883	5.3644	0.0141817	1.52226e-4	0.0959618	0.0106137
chr16	29550022	29550117	6471092	0	-	0.494737	(0.476,0.515]	chr16	625241	9	INTRON	INTRON	ENSG00000288632:SMG1P2	ENSG00000288632.1:ENSG00000205534.6	ENST00000675579.1:ENST00000566127.1	lncRNA	lncRNA	lncRNA:transcribed_unprocessed_pseudogene	lncRNA:transcribed_unprocessed_pseudogene	0	40	2	4.526	4.8387150000000005	5.15143	0.00699701	0.00166579	0.0754576	0.0369207
chr1	160030761	160030859	571015	0	-	0.418367	(0.408,0.44]	chr1	69055	3	CDS	CDS:EXON_MRNA	PIGM	ENSG00000143315.8	ENST00000368090.5	protein_coding	protein_coding	protein_coding	protein_coding	1	81	2	4.06657	4.838625	5.61068	3.21002e-4	5.10925e-5	0.0165409	0.00585477
chr10	26859247	26859347	4584484	0	-	0.3	(0.28,0.32]	chr10	422409	191	INTRON	INTRON	ABI1	ENSG00000136754.18	ENST00000376138.7:ENST00000376166.5:ENST00000376160.5:ENST00000376139.6:ENST00000376142.6:ENST00000359188.8:ENST00000376170.8:ENST00000536334.5:ENST00000490841.6:ENST00000376137.8:ENST00000376140.4:ENST00000346832.10	protein_coding	protein_coding	protein_coding	protein_coding	0	43	2	4.52233	4.837955	5.15358	0.0129279	0.0052282	0.0990564	0.0633615
chr2	156236858	156236958	1248800	0	-	0.3	(0.28,0.32]	chr2	132427	85	INTRON	INTRON	LINC01876	ENSG00000226383.7	ENST00000635799.1:ENST00000662073.1:ENST00000659502.1:ENST00000428651.2:ENST00000661513.1:ENST00000657334.1:ENST00000638047.1:ENST00000637554.1:ENST00000636956.1:ENST00000637665.1:ENST00000637476.1:ENST00000637324.1	lncRNA	lncRNA	lncRNA	lncRNA	0	43	2	4.52233	4.837955	5.15358	0.0129279	0.0052282	0.0990564	0.0633615
chr12	107065242	107065342	5404749	0	-	0.55	(0.515,0.57]	chr12	515735	150	INTRON	INTRON	CRY1	ENSG00000008405.12	ENST00000008527.10	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	4.399	4.837755	5.27651	0.00708863	5.11033e-4	0.0754923	0.020816
chr16	85432917	85433017	6414159	0	+	0.52	(0.515,0.57]	chr16	615465	736	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	4.399	4.837755	5.27651	0.00708863	5.11033e-4	0.0754923	0.020816
chr5	236031	236130	2312396	0	+	0.515152	(0.476,0.515]	chr5	223664	8	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	SDHA	ENSG00000073578.18	ENST00000504309.5:ENST00000505555.5:ENST00000510361.5:ENST00000264932.11:ENST00000514027.5:ENST00000515752.5:ENST00000512962.5:ENST00000511810.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	85	2	3.60627	4.837435	6.0686	7.49088e-4	7.85791e-6	0.0251179	0.00201289
chr17	80760290	80760390	6686948	0	+	0.46	(0.44,0.476]	chr17	653441	53	INTRON	INTRON	RPTOR	ENSG00000141564.15	ENST00000574767.5:ENST00000577161.5:ENST00000306801.8:ENST00000570891.5:ENST00000544334.6:ENST00000575542.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	40	2	4.53034	4.837059999999999	5.14378	0.00672609	0.00184943	0.0738715	0.0388609
chr3	100390764	100390863	1756552	0	-	0.464646	(0.44,0.476]	chr3	178197	34	INTRON	INTRON	TOMM70	ENSG00000154174.8	ENST00000284320.6	protein_coding	protein_coding	protein_coding	protein_coding	0	40	2	4.53034	4.837059999999999	5.14378	0.00672609	0.00184943	0.0738715	0.0388609
chr1	65527615	65527715	138261	0	+	0.3	(0.28,0.32]	chr1	15499	14	INTRON	INTRON	LEPR	ENSG00000116678.20	ENST00000371060.7:ENST00000371059.7:ENST00000349533.11:ENST00000616738.4:ENST00000344610.12:ENST00000462765.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	42	2	4.68527	4.836995	4.98872	0.00838468	0.00819419	0.0810802	0.0774402
chr7	23348332	23348431	3502433	0	-	0.30303	(0.28,0.32]	chr7	326856	2	INTRON	INTRON	IGF2BP3	ENSG00000136231.14	ENST00000258729.8:ENST00000421467.6:ENST00000468263.5:ENST00000492771.5:ENST00000479504.5:ENST00000466809.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	42	2	4.68527	4.836995	4.98872	0.00838468	0.00819419	0.0810802	0.0774402
chr10	97747473	97747571	4505394	0	+	0.265306	[0,0.28]	chr10	414790	22	INTRON	INTRON	ZFYVE27	ENSG00000155256.18	ENST00000337540.11:ENST00000370613.7:ENST00000370610.7:ENST00000357540.8:ENST00000393677.8:ENST00000423811.3:ENST00000684270.1:ENST00000359980.5	protein_coding	protein_coding	protein_coding	protein_coding	0	43	2	4.75964	4.83689	4.91414	0.0232081	0.0064519	0.118148	0.0730725
chr11	86341415	86341515	4842758	0	+	0.26	[0,0.28]	chr11	451825	35	INTRON	INTRON	HIKESHI	ENSG00000149196.17	ENST00000533986.5:ENST00000278483.8:ENST00000531485.5:ENST00000528004.5:ENST00000530208.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	43	2	4.75964	4.83689	4.91414	0.0232081	0.0064519	0.118148	0.0730725
chr11	93678028	93678126	4847938	0	+	0.244898	[0,0.28]	chr11	452095	20	INTRON	INTRON	CEP295	ENSG00000166004.15	ENST00000325212.11	protein_coding	protein_coding	protein_coding	protein_coding	0	43	2	4.75964	4.83689	4.91414	0.0232081	0.0064519	0.118148	0.0730725
chr11	9212620	9212720	4908544	0	-	0.25	[0,0.28]	chr11	460107	46	INTRON	INTRON	DENND5A	ENSG00000184014.9	ENST00000328194.8:ENST00000681203.1:ENST00000530780.2:ENST00000679999.1:ENST00000680470.1:ENST00000680554.1:ENST00000681425.1:ENST00000679568.1:ENST00000679446.1:ENST00000680294.1:ENST00000680742.1:ENST00000680885.1:ENST00000530044.5:ENST00000526707.5:ENST00000532696.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	43	2	4.82433	4.8368199999999995	4.84931	0.0200334	0.00779241	0.109608	0.0787356
chr17	31197501	31197601	6592170	0	+	0.27	[0,0.28]	chr17	641101	142	INTRON	INTRON	NF1	ENSG00000196712.20	ENST00000696138.1:ENST00000356175.7:ENST00000487476.5:ENST00000691014.1:ENST00000358273.9:ENST00000431387.8:ENST00000579081.5:ENST00000495910.6:ENST00000686189.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	43	2	4.82433	4.8368199999999995	4.84931	0.0200334	0.00779241	0.109608	0.0787356
chr19	55102518	55102615	7212538	0	-	0.237113	[0,0.28]	chr19	732365	31	INTRON	INTRON	PPP1R12C	ENSG00000125503.13	ENST00000263433.8:ENST00000435544.6:ENST00000592993.1	protein_coding	protein_coding	protein_coding	protein_coding	0	43	2	4.82433	4.8368199999999995	4.84931	0.0200334	0.00779241	0.109608	0.0787356
chr19	28516217	28516316	7046851	0	+	0.50505	(0.476,0.515]	chr19	702495	65	INTRON	INTRON	ENSG00000267423	ENSG00000267423.1	ENST00000592931.1	lncRNA	lncRNA	lncRNA	lncRNA	0	43	2	4.21964	4.83677	5.4539	0.0167715	5.16081e-4	0.110511	0.0208667
chr1	2268536	2268636	2569	0	+	0.58	(0.57,1]	chr1	557	201	INTRON	INTRON	SKI	ENSG00000157933.10	ENST00000378536.5:ENST00000508416.1:ENST00000478223.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	30	2	4.80011	4.83672	4.87333	6.07135e-4	3.21412e-4	0.0226059	0.0159645
chr22	46158862	46158960	7532329	0	+	0.571429	(0.57,1]	chr22	770129	24	INTRON	INTRON	PPARA	ENSG00000186951.17	ENST00000440343.5:ENST00000407236.6:ENST00000415785.5:ENST00000420804.5	protein_coding	protein_coding	protein_coding	protein_coding	0	30	2	4.80011	4.83672	4.87333	6.07135e-4	3.21412e-4	0.0226059	0.0159645
chr11	102347664	102347754	4855157	0	+	0.4	(0.378,0.408]	chr11	452771	6	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	BIRC2	ENSG00000110330.10	ENST00000527808.1:ENST00000227758.7:ENST00000530675.5:ENST00000532832.5:ENST00000534646.5:ENST00000533742.5:ENST00000532672.5:ENST00000531259.5:ENST00000527465.1:ENST00000527910.5:ENST00000613397.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	40	2	4.50056	4.836685	5.17281	0.015974	7.27294e-4	0.101453	0.0245647
chr17	18899808	18899907	6570172	0	+	0.353535	(0.35,0.378]	chr17	638865	96	INTRON	INTRON	PRPSAP2	ENSG00000141127.15	ENST00000610773.4:ENST00000432893.6:ENST00000492129.5:ENST00000419071.6:ENST00000487101.5:ENST00000536323.5:ENST00000412418.5:ENST00000268835.7:ENST00000395656.6:ENST00000455992.6:ENST00000422237.5:ENST00000542013.5:ENST00000574451.5:ENST00000575337.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	40	2	4.64457	4.836444999999999	5.02832	0.012652	0.00156444	0.0926667	0.0365263
chr17	75962667	75962767	6839706	0	-	0.36	(0.35,0.378]	chr17	676367	19	INTRON	INTRON	ACOX1	ENSG00000161533.12	ENST00000293217.10:ENST00000572047.5:ENST00000573078.5:ENST00000301608.8:ENST00000591857.5:ENST00000588176.5:ENST00000589301.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	40	2	4.64457	4.836444999999999	5.02832	0.012652	0.00156444	0.0926667	0.0365263
chr21	6648128	6648227	7425653	0	-	0.353535	(0.35,0.378]	chr21	757494	99	INTRON	INTRON	ENSG00000280145	ENSG00000280145.3	ENST00000625185.3:ENST00000623106.3:ENST00000624846.3:ENST00000623313.1:ENST00000624965.1	lncRNA	lncRNA	lncRNA	lncRNA	0	40	2	4.64457	4.836444999999999	5.02832	0.012652	0.00156444	0.0926667	0.0365263
chr17	38883951	38884050	6606545	0	+	0.494949	(0.476,0.515]	chr17	643195	54	INTRON	INTRON	LASP1	ENSG00000002834.18	ENST00000433206.6:ENST00000585841.5:ENST00000318008.11:ENST00000443937.7:ENST00000584106.1:ENST00000435347.7:ENST00000419929.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	39	2	4.61402	4.836245	5.05847	0.00947755	0.00108081	0.0817766	0.0300133
chr2	26788670	26788769	715774	0	+	0.50505	(0.476,0.515]	chr2	82664	20	INTRON	INTRON	CENPA	ENSG00000115163.15	ENST00000475662.5:ENST00000472719.5:ENST00000335756.9:ENST00000233505.12:ENST00000419525.5:ENST00000460030.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	39	2	4.61402	4.836245	5.05847	0.00947755	0.00108081	0.0817766	0.0300133
chr8	43104114	43104209	3746270	0	+	0.484211	(0.476,0.515]	chr8	348604	4	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	POMK	ENSG00000185900.11	ENST00000676193.1:ENST00000331373.10:ENST00000674727.1:ENST00000674937.1:ENST00000614426.2:ENST00000674782.1:ENST00000676178.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	39	2	4.61402	4.836245	5.05847	0.00947755	0.00108081	0.0817766	0.0300133
chr4	73208192	73208292	2160320	0	-	0.25	[0,0.28]	chr4	212794	303	INTRON	INTRON	ANKRD17	ENSG00000132466.20	ENST00000358602.9:ENST00000558247.5:ENST00000330838.10:ENST00000509867.6:ENST00000561029.1:ENST00000559367.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	99	2	3.60928	4.836	6.06272	9.66382e-4	4.91495e-4	0.0285961	0.0205704
chr16	67756686	67756785	6505177	0	-	0.40404	(0.378,0.408]	chr16	629626	119	INTRON	INTRON	RANBP10	ENSG00000141084.12	ENST00000317506.8:ENST00000448631.6:ENST00000602506.5:ENST00000602677.5:ENST00000602525.5:ENST00000602638.5:ENST00000602815.5:ENST00000602887.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	40	2	4.60771	4.835915	5.06412	0.00567576	0.0030522	0.0678837	0.0493883
chr22	50427691	50427790	7545045	0	+	0.50505	(0.476,0.515]	chr22	771081	37	INTRON	INTRON	PPP6R2	ENSG00000100239.16	ENST00000359139.7:ENST00000395741.7:ENST00000612753.5:ENST00000395744.7:ENST00000216061.9:ENST00000401672.7:ENST00000427222.2	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	4.69918	4.8358550000000005	4.97253	0.00400966	0.00311573	0.057767	0.0498063
chr12	770967	771067	5056361	0	+	0.42	(0.408,0.44]	chr12	477423	163	INTRON	INTRON	WNK1	ENSG00000060237.19	ENST00000315939.11:ENST00000340908.9:ENST00000535572.5:ENST00000537687.5:ENST00000530271.6:ENST00000447667.2	protein_coding	protein_coding	protein_coding	protein_coding	1	86	2	3.69572	4.83567	5.97562	5.37849e-4	1.24941e-5	0.0214775	0.00263887
chr2	175094362	175094461	1271587	0	-	0.333333	(0.32,0.35]	chr2	134403	7	INTRON	INTRON	ATF2	ENSG00000115966.18	ENST00000345739.9:ENST00000426833.7:ENST00000264110.7:ENST00000409437.5:ENST00000409635.5:ENST00000435004.6:ENST00000428760.5:ENST00000392544.5:ENST00000417080.5:ENST00000456655.5:ENST00000421438.5:ENST00000429579.5:ENST00000415955.5:ENST00000409499.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	88	2	4.00463	4.835145	5.66566	6.06695e-4	9.86358e-5	0.0226059	0.00835539
chr15	68103277	68103377	6056446	0	+	0.29	(0.28,0.32]	chr15	576567	150	INTRON	INTRON	PIAS1	ENSG00000033800.14	ENST00000564915.5:ENST00000249636.11:ENST00000562190.1:ENST00000545237.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	123	2	3.27221	4.83469	6.39717	3.15212e-4	4.86111e-5	0.0159645	0.00605189
chr1	207340644	207340705	303464	0	+	0.459016	(0.44,0.476]	chr1	34924	1	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	CD55	ENSG00000196352.18	ENST00000695822.1:ENST00000695823.1:ENST00000695826.1:ENST00000695825.1:ENST00000695824.1:ENST00000367063.6:ENST00000695827.1:ENST00000695828.1:ENST00000645323.1:ENST00000391921.9:ENST00000367064.9:ENST00000314754.12:ENST00000644836.1:ENST00000476590.1:ENST00000465534.5:ENST00000618707.2:ENST00000635614.2:ENST00000695831.1:ENST00000634386.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	39	2	4.60647	4.834675	5.06288	0.0102339	0.00102416	0.0850389	0.0294041
chr16	29695399	29695499	6335544	0	+	0.42	(0.408,0.44]	chr16	606818	2	SS5_PROX	SS5_PROX:INTRON	QPRT	ENSG00000103485.19	ENST00000449759.2:ENST00000219771.7:ENST00000395384.9:ENST00000562473.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	82	2	3.55215	4.8342600000000004	6.11637	7.01039e-4	3.037e-5	0.0241881	0.00456454
chr16	74327372	74327471	6523122	0	-	0.474747	(0.44,0.476]	chr16	631552	141	INTRON	INTRON	ENSG00000259972	ENSG00000259972.3	ENST00000565313.1:ENST00000561921.1	lncRNA	lncRNA	lncRNA	lncRNA	0	39	2	4.70355	4.83423	4.96491	0.00383786	0.0034249	0.0562562	0.0517761
chr17	665934	666032	6698072	0	-	0.469388	(0.44,0.476]	chr17	655340	37	INTRON	INTRON	VPS53	ENSG00000141252.21	ENST00000437048.7:ENST00000681160.1:ENST00000680465.1:ENST00000681661.1:ENST00000680872.1:ENST00000681317.1:ENST00000681510.1:ENST00000680641.1:ENST00000681946.1:ENST00000576149.5:ENST00000681917.1:ENST00000681096.1:ENST00000573028.5:ENST00000571805.6:ENST00000681478.1:ENST00000680128.1:ENST00000291074.10:ENST00000389040.9:ENST00000401468.7:ENST00000680704.1:ENST00000572334.7:ENST00000680069.1:ENST00000681902.1:ENST00000679361.1:ENST00000681154.1:ENST00000680958.1:ENST00000680274.1:ENST00000681229.1:ENST00000681035.1:ENST00000681133.1:ENST00000679680.1:ENST00000576019.6:ENST00000679961.1:ENST00000681120.1:ENST00000575207.6:ENST00000680660.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	39	2	4.70355	4.83423	4.96491	0.00383786	0.0034249	0.0562562	0.0517761
chr5	83113602	83113702	2407226	0	+	0.45	(0.44,0.476]	chr5	232277	20	INTRON	INTRON	XRCC4	ENSG00000152422.16	ENST00000282268.7:ENST00000338635.10:ENST00000396027.9:ENST00000542685.5:ENST00000511817.1:ENST00000509268.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	39	2	4.70355	4.83423	4.96491	0.00383786	0.0034249	0.0562562	0.0517761
chr16	68102995	68103095	6370400	0	+	0.3	(0.28,0.32]	chr16	612188	134	INTRON	INTRON	ENSG00000261864:NFATC3	ENSG00000261864.1:ENSG00000072736.19	ENST00000548144.1:ENST00000563319.5:ENST00000569766.5:ENST00000553077.5:ENST00000566301.5:ENST00000549350.5:ENST00000566893.5:ENST00000575270.5:ENST00000561714.5:ENST00000346183.8:ENST00000568466.6:ENST00000539828.6:ENST00000562171.1:ENST00000349223.9:ENST00000329524.8:ENST00000379165.8:ENST00000562926.5:ENST00000570212.5:ENST00000563796.5:ENST00000567152.5:ENST00000563288.5:ENST00000535127.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA:processed_transcript	1	93	2	4.03338	4.83411	5.63484	0.00108324	1.04313e-4	0.0303015	0.00863456
chr11	66658963	66659063	4811240	0	+	0.25	[0,0.28]	chr11	447918	67	INTRON	INTRON	RBM4	ENSG00000173933.21	ENST00000396053.9	protein_coding	protein_coding	protein_coding	protein_coding	0	43	2	4.69191	4.8340499999999995	4.97619	0.0269474	0.00535756	0.123442	0.0663076
chr7	152400947	152401047	3680943	0	-	0.28	[0,0.28]	chr7	341660	419	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000682301.1:ENST00000452749.2:ENST00000680867.1:ENST00000683800.1:ENST00000684278.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	43	2	4.69191	4.8340499999999995	4.97619	0.0269474	0.00535756	0.123442	0.0663076
chr9	99118385	99118485	4175567	0	+	0.25	[0,0.28]	chr9	380654	127	INTRON	INTRON	TGFBR1	ENSG00000106799.13	ENST00000547314.5:ENST00000552573.6:ENST00000374990.6:ENST00000374994.9:ENST00000552516.5:ENST00000549766.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	43	2	4.69191	4.8340499999999995	4.97619	0.0269474	0.00535756	0.123442	0.0663076
chrX	45103923	45104023	7650946	0	+	0.28	[0,0.28]	chrX	782860	127	INTRON	INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1:ENST00000675525.1:ENST00000414389.5:ENST00000675546.1:ENST00000431196.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	43	2	4.69191	4.8340499999999995	4.97619	0.0269474	0.00535756	0.123442	0.0663076
chr22	46349990	46350090	7534030	0	+	0.25	[0,0.28]	chr22	770388	3	SS3_PROX	SS3_PROX:INTRON	TRMU	ENSG00000100416.15	ENST00000486620.5:ENST00000441818.5:ENST00000381021.7:ENST00000453630.5:ENST00000456595.5:ENST00000457572.5:ENST00000645190.1:ENST00000645026.1:ENST00000647301.1:ENST00000642562.1:ENST00000381019.3:ENST00000642923.1:ENST00000496831.5:ENST00000465378.6:ENST00000644006.1:ENST00000485175.5:ENST00000643137.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	44	2	4.46726	4.833985	5.20071	0.0427997	0.00261806	0.148082	0.0470772
chr4	110148190	110148290	2227230	0	-	0.28	[0,0.28]	chr4	218024	422	INTRON	INTRON	ELOVL6	ENSG00000170522.10	ENST00000394607.7:ENST00000302274.8:ENST00000514184.5:ENST00000506625.5:ENST00000506461.1:ENST00000503885.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	44	2	4.46726	4.833985	5.20071	0.0427997	0.00261806	0.148082	0.0470772
chr5	32262612	32262712	2597888	0	-	0.23	[0,0.28]	chr5	246813	1	SS5_PROX	SS5_PROX:INTRON	MTMR12	ENSG00000150712.11	ENST00000280285.9:ENST00000382142.8:ENST00000264934.5	protein_coding	protein_coding	protein_coding	protein_coding	0	44	2	4.46726	4.833985	5.20071	0.0427997	0.00261806	0.148082	0.0470772
chr12	12359307	12359406	5079097	0	+	0.424242	(0.408,0.44]	chr12	480111	14	INTRON	INTRON	BORCS5	ENSG00000165714.11	ENST00000314565.9:ENST00000542728.5:ENST00000543990.1:ENST00000298571.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	40	2	4.53088	4.83395	5.13702	0.00669275	0.00202889	0.0738715	0.04086
chr2	96727024	96727124	1181470	0	-	0.42	(0.408,0.44]	chr2	126570	135	INTRON	INTRON	LMAN2L	ENSG00000114988.12	ENST00000264963.9:ENST00000434524.5:ENST00000377079.8:ENST00000446780.5:ENST00000434865.5:ENST00000440610.5:ENST00000449221.5:ENST00000480869.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	40	2	4.53088	4.83395	5.13702	0.00669275	0.00202889	0.0738715	0.04086
chr1	90028593	90028692	161034	0	+	0.20202	[0,0.28]	chr1	17365	10	UTR3	UTR3:EXON_MRNA	ZNF326	ENSG00000162664.17	ENST00000340281.9:ENST00000370447.3	protein_coding	protein_coding	protein_coding	protein_coding	0	43	2	4.78142	4.8338350000000005	4.88625	0.0173315	0.00943974	0.104099	0.0861183
chr11	31501982	31502082	4939165	0	-	0.24	[0,0.28]	chr11	462601	134	INTRON	INTRON	IMMP1L	ENSG00000148950.11	ENST00000532287.6:ENST00000534812.5:ENST00000526776.5:ENST00000278200.5:ENST00000648582.1:ENST00000533642.1:ENST00000527184.5:ENST00000528161.5:ENST00000532624.5:ENST00000529749.5:ENST00000530023.5:ENST00000531693.1:ENST00000532668.1:ENST00000533921.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	43	2	4.78142	4.8338350000000005	4.88625	0.0173315	0.00943974	0.104099	0.0861183
chr5	53605295	53605395	2352939	0	+	0.28	[0,0.28]	chr5	227008	4	SS5_PROX	SS5_PROX:INTRON	NDUFS4	ENSG00000164258.12	ENST00000507026.5:ENST00000502423.5:ENST00000296684.10:ENST00000506974.5:ENST00000506765.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	43	2	4.78142	4.8338350000000005	4.88625	0.0173315	0.00943974	0.104099	0.0861183
chr10	17420190	17420290	4568674	0	-	0.53	(0.515,0.57]	chr10	421387	292	INTRON	INTRON	ST8SIA6	ENSG00000148488.17	ENST00000377602.5:ENST00000648997.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	38	2	4.41498	4.833405	5.25183	0.0106866	2.6074e-4	0.0861859	0.014326
chr1	108323797	108323897	176875	0	+	0.25	[0,0.28]	chr1	19165	92	INTRON	INTRON	SLC25A24P1	ENSG00000241361.8	ENST00000411846.6:ENST00000434803.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	44	2	4.55618	4.833255	5.11033	0.0171034	0.00991388	0.110899	0.0838372
chr20	25419583	25419683	7250586	0	+	0.26	[0,0.28]	chr20	736353	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	GINS1	ENSG00000101003.11	ENST00000696810.1:ENST00000696806.1:ENST00000262460.5:ENST00000696862.1:ENST00000696807.1:ENST00000696874.1:ENST00000696870.1:ENST00000696804.1:ENST00000696893.1:ENST00000696805.1:ENST00000696894.1:ENST00000696875.1:ENST00000696876.1:ENST00000696814.1:ENST00000696878.1:ENST00000696813.1:ENST00000696793.1:ENST00000696877.1:ENST00000484893.2:ENST00000696895.1:ENST00000696803.1:ENST00000696896.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	44	2	4.55618	4.833255	5.11033	0.0171034	0.00991388	0.110899	0.0838372
chr3	44625543	44625643	1411770	0	+	0.24	[0,0.28]	chr3	148063	4	SS5_PROX	SS5_PROX:INTRON	ZNF197	ENSG00000186448.15	ENST00000412641.1:ENST00000383744.8:ENST00000344387.9:ENST00000383745.6:ENST00000334075.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	44	2	4.55618	4.833255	5.11033	0.0171034	0.00991388	0.110899	0.0838372
chr12	123292507	123292607	5444452	0	-	0.45	(0.44,0.476]	chr12	520952	35	UTR3	UTR3:EXON_MRNA	SBNO1	ENSG00000139697.14	ENST00000602398.3:ENST00000267176.8:ENST00000420886.6	protein_coding	protein_coding	protein_coding	protein_coding	1	86	2	3.4718	4.832985	6.19417	0.00136358	3.48092e-6	0.0336321	0.00120947
chr10	97460506	97460594	4676083	0	-	0.454545	(0.44,0.476]	chr10	431074	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MMS19	ENSG00000155229.21	ENST00000370782.6:ENST00000438925.7:ENST00000415383.5:ENST00000434538.5:ENST00000495415.5:ENST00000355839.10:ENST00000327238.14:ENST00000480108.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	86	2	3.87023	4.8327599999999995	5.79529	2.32199e-4	3.3977e-5	0.0139633	0.0046443
chr1	61187823	61187923	128450	0	+	0.56	(0.515,0.57]	chr1	14778	549	INTRON	INTRON	NFIA	ENSG00000162599.17	ENST00000371191.5:ENST00000664495.1:ENST00000476646.5:ENST00000407417.7:ENST00000479364.1:ENST00000371189.8:ENST00000670151.1:ENST00000664149.1:ENST00000662015.1:ENST00000403491.8:ENST00000371187.7:ENST00000485903.6:ENST00000371185.6:ENST00000371184.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	77	2	3.88003	4.83212	5.78421	1.52864e-4	1.63043e-5	0.0112857	0.00304426
chr11	78395369	78395468	5000163	0	-	0.535354	(0.515,0.57]	chr11	472472	309	INTRON	INTRON	GAB2	ENSG00000033327.13	ENST00000361507.5:ENST00000526030.1:ENST00000528886.5:ENST00000530915.1:ENST00000534823.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	37	2	4.59914	4.8318650000000005	5.06459	0.00616166	6.03964e-4	0.0676501	0.0223465
chr2	20039499	20039598	1075611	0	-	0.545455	(0.515,0.57]	chr2	114903	15	INTRON	INTRON	LAPTM4A	ENSG00000068697.7	ENST00000175091.5	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	4.59914	4.8318650000000005	5.06459	0.00616166	6.03964e-4	0.0676501	0.0223465
chr9	129064425	129064523	4208801	0	+	0.55102	(0.515,0.57]	chr9	385533	4	INTRON	INTRON	MIGA2	ENSG00000148343.19	ENST00000684074.1:ENST00000439290.5:ENST00000445183.5:ENST00000358369.8:ENST00000474639.5:ENST00000495975.1:ENST00000414342.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	37	2	4.59914	4.8318650000000005	5.06459	0.00616166	6.03964e-4	0.0676501	0.0223465
chr16	81451430	81451530	6405063	0	+	0.35	(0.32,0.35]	chr16	615026	55	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8	protein_coding	protein_coding	protein_coding	protein_coding	1	87	2	3.82296	4.8318200000000004	5.84068	3.015e-4	2.45656e-4	0.0160895	0.0138769
chr12	9309647	9309747	5073274	0	+	0.44	(0.408,0.44]	chr12	479696	3	SS3_PROX	SS3_PROX:INTRON	ENSG00000111788	ENSG00000111788.10	ENST00000539757.1	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	0	39	2	4.59979	4.8316099999999995	5.06343	0.0109537	0.00101725	0.0873034	0.0293497
chr5	71491631	71491728	2383941	0	+	0.412371	(0.408,0.44]	chr5	229911	1	INTRON	INTRON	BDP1	ENSG00000145734.20	ENST00000358731.9:ENST00000508917.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	39	2	4.59979	4.8316099999999995	5.06343	0.0109537	0.00101725	0.0873034	0.0293497
chr8	38190592	38190692	3735218	0	+	0.42	(0.408,0.44]	chr8	347043	131	INTRON	INTRON	BAG4	ENSG00000156735.11	ENST00000521282.1:ENST00000432471.6:ENST00000287322.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	39	2	4.59979	4.8316099999999995	5.06343	0.0109537	0.00101725	0.0873034	0.0293497
chr1	92578626	92578725	506083	0	-	0.535354	(0.515,0.57]	chr1	59781	145	INTRON	INTRON	EVI5	ENSG00000067208.16	ENST00000370331.5:ENST00000540033.2:ENST00000684568.2:ENST00000491940.5	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	4.68568	4.83145	4.97722	0.00270027	0.00168681	0.0479115	0.0370386
chr22	19883840	19883935	7555726	0	-	0.547368	(0.515,0.57]	chr22	772492	5	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	TXNRD2	ENSG00000184470.21	ENST00000400518.5:ENST00000542719.6:ENST00000494454.5:ENST00000474308.5:ENST00000400525.6:ENST00000400521.7:ENST00000400519.6:ENST00000634537.1:ENST00000487165.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:non_stop_decay:nonsense_mediated_decay	0	37	2	4.68568	4.83145	4.97722	0.00270027	0.00168681	0.0479115	0.0370386
chr6	15505064	15505164	2825545	0	+	0.56	(0.515,0.57]	chr6	265242	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	JARID2	ENSG00000008083.14	ENST00000341776.7:ENST00000397311.4:ENST00000474854.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	37	2	4.68568	4.83145	4.97722	0.00270027	0.00168681	0.0479115	0.0370386
chr16	3825546	3825646	6435534	0	-	0.37	(0.35,0.378]	chr16	619576	121	INTRON	INTRON	CREBBP	ENSG00000005339.15	ENST00000262367.10:ENST00000382070.7:ENST00000636895.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	42	2	4.40128	4.831265	5.26125	0.0120289	0.00191117	0.0962115	0.03947
chr1	186372482	186372576	604403	0	-	0.404255	(0.378,0.408]	chr1	72189	11	INTRON	INTRON	TPR	ENSG00000047410.14	ENST00000367478.9:ENST00000474852.1:ENST00000613151.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	132	2	3.45259	4.8312349999999995	6.20988	2.51359e-5	1.36611e-5	0.00413384	0.00275994
chr6	160033407	160033507	3023619	0	+	0.44	(0.408,0.44]	chr6	282058	3	SS5_PROX	SS5_PROX:INTRON	IGF2R	ENSG00000197081.16	ENST00000676781.1:ENST00000677704.1:ENST00000356956.6:ENST00000649737.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	39	2	4.7041	4.831135	4.95817	0.00381677	0.00372419	0.0562562	0.0535094
chr3	160410924	160411023	1544711	0	+	0.353535	(0.35,0.378]	chr3	160690	59	INTRON	INTRON	SMC4	ENSG00000113810.16	ENST00000472282.5:ENST00000472991.5:ENST00000357388.8:ENST00000469762.5:ENST00000468653.5:ENST00000467468.5:ENST00000469858.5:ENST00000489573.5:ENST00000462787.5:ENST00000344722.5:ENST00000470240.5:ENST00000497984.5:ENST00000487747.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	84	2	3.69928	4.83097	5.96266	3.94786e-4	1.153e-4	0.0178567	0.00968369
chr15	82503781	82503881	6247287	0	-	0.34	(0.32,0.35]	chr15	596152	255	INTRON	INTRON	GOLGA2P10	ENSG00000255769.7	ENST00000618004.4:ENST00000614347.4:ENST00000618267.4:ENST00000612379.4:ENST00000619738.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	41	2	4.53988	4.830435	5.12099	0.0202178	0.00143632	0.109913	0.0347139
chr7	65894239	65894339	3323087	0	+	0.33	(0.32,0.35]	chr7	309012	203	INTRON	INTRON	VKORC1L1	ENSG00000196715.7	ENST00000360768.5:ENST00000648187.1:ENST00000648179.1:ENST00000434382.2	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	4.53988	4.830435	5.12099	0.0202178	0.00143632	0.109913	0.0347139
chr7	129856473	129856573	3636995	0	-	0.34	(0.32,0.35]	chr7	338182	168	INTRON	INTRON	UBE2H	ENSG00000186591.13	ENST00000355621.8:ENST00000649897.1:ENST00000473814.6:ENST00000496698.5:ENST00000472396.5:ENST00000480245.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	41	2	4.53988	4.830435	5.12099	0.0202178	0.00143632	0.109913	0.0347139
chr8	19849639	19849739	3709894	0	+	0.33	(0.32,0.35]	chr8	344218	4	SS5_PROX	SS5_PROX:INTRON	INTS10	ENSG00000104613.12	ENST00000397977.8:ENST00000520670.1:ENST00000521008.1:ENST00000523772.1:ENST00000520827.1:ENST00000517546.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	41	2	4.53988	4.830435	5.12099	0.0202178	0.00143632	0.109913	0.0347139
chr7	152327905	152328005	3680208	0	-	0.4	(0.378,0.408]	chr7	341641	122	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000684262.1:ENST00000682301.1:ENST00000452749.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	167	2	3.09839	4.828835	6.55928	1.46545e-5	3.91326e-6	0.00286704	0.00142759
chr9	36385088	36385187	4249688	0	-	0.323232	(0.32,0.35]	chr9	391443	86	INTRON	INTRON	RNF38	ENSG00000137075.18	ENST00000353739.8:ENST00000259605.11:ENST00000377885.6:ENST00000357058.7:ENST00000350199.8:ENST00000611646.4:ENST00000377877.4:ENST00000491349.5:ENST00000484621.1:ENST00000488058.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	43	2	4.37269	4.828595	5.2845	0.0154102	0.00240071	0.108569	0.0440612
chr12	115978810	115978907	5422528	0	-	0.268041	[0,0.28]	chr12	518166	6	EXON_MRNA	EXON_MRNA:INTRON	MED13L	ENSG00000123066.9	ENST00000281928.9:ENST00000648379.1:ENST00000650226.1:ENST00000649607.1:ENST00000648737.1:ENST00000649775.1:ENST00000648825.1:ENST00000648916.1:ENST00000548694.2:ENST00000649378.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	43	2	4.62084	4.82826	5.03568	0.0313633	0.00446141	0.13151	0.0610799
chr8	51840634	51840734	3946003	0	-	0.25	[0,0.28]	chr8	362016	6	INTRON	INTRON	PCMTD1	ENSG00000168300.14	ENST00000544451.2:ENST00000360540.9:ENST00000522514.6:ENST00000519559.1:ENST00000519554.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	43	2	4.62084	4.82826	5.03568	0.0313633	0.00446141	0.13151	0.0610799
chr1	46688253	46688352	444132	0	-	0.40404	(0.378,0.408]	chr1	53880	15	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	EFCAB14	ENSG00000159658.15	ENST00000674268.1:ENST00000371933.8:ENST00000672422.2:ENST00000674435.1:ENST00000479745.6:ENST00000481623.2:ENST00000674495.1:ENST00000674263.1:ENST00000487741.6:ENST00000459797.2:ENST00000674415.1:ENST00000484461.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	39	2	4.73839	4.828075	4.91776	0.00837252	0.00196368	0.0774402	0.0411469
chr11	3934187	3934287	4724252	0	+	0.38	(0.378,0.408]	chr11	437144	119	INTRON	INTRON	STIM1	ENSG00000167323.12	ENST00000525403.5:ENST00000526596.2:ENST00000300737.8:ENST00000616714.4:ENST00000527651.5:ENST00000532610.5:ENST00000532919.5:ENST00000530554.5:ENST00000524822.5:ENST00000528656.5:ENST00000525055.5	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	4.73839	4.828075	4.91776	0.00837252	0.00196368	0.0774402	0.0411469
chr11	72713820	72713897	4978978	0	-	0.38961	(0.378,0.408]	chr11	470539	2	SS5_PROX	SS5_PROX:INTRON	ARAP1	ENSG00000186635.15	ENST00000359373.9:ENST00000393609.8:ENST00000465814.5:ENST00000334211.12:ENST00000426523.5:ENST00000429686.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	39	2	4.73839	4.828075	4.91776	0.00837252	0.00196368	0.0774402	0.0411469
chr4	1695140	1695240	2095048	0	-	0.39	(0.378,0.408]	chr4	207197	3	SS3_PROX	SS3_PROX:INTRON	SLBP	ENSG00000163950.13	ENST00000489418.6:ENST00000429429.6:ENST00000318386.8:ENST00000483348.5:ENST00000488267.5	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	4.73839	4.828075	4.91776	0.00837252	0.00196368	0.0774402	0.0411469
chr10	21603734	21603834	4405114	0	+	0.37	(0.35,0.378]	chr10	406466	79	INTRON	INTRON	MLLT10	ENSG00000078403.17	ENST00000651097.1:ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000650772.1:ENST00000651298.1:ENST00000495130.5:ENST00000377059.7:ENST00000652258.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	40	2	4.5655	4.82801	5.09052	0.0155464	0.00123501	0.100909	0.0326215
chr11	62833231	62833326	4961748	0	-	0.357895	(0.35,0.378]	chr11	467037	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	WDR74	ENSG00000133316.16	ENST00000278856.9:ENST00000311713.11:ENST00000525239.5:ENST00000529106.5:ENST00000525752.5:ENST00000544831.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	40	2	4.5655	4.82801	5.09052	0.0155464	0.00123501	0.100909	0.0326215
chr16	3669947	3670045	6433976	0	-	0.377551	(0.35,0.378]	chr16	619294	35	INTRON	INTRON	TRAP1	ENSG00000126602.11	ENST00000246957.10:ENST00000538171.5:ENST00000575671.5:ENST00000573872.5:ENST00000576335.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	40	2	4.5655	4.82801	5.09052	0.0155464	0.00123501	0.100909	0.0326215
chr15	22850045	22850145	5976637	0	+	0.39	(0.378,0.408]	chr15	568409	44	INTRON	INTRON	NIPA2	ENSG00000140157.16	ENST00000560205.5:ENST00000398014.7:ENST00000359727.8:ENST00000674173.1:ENST00000560762.5:ENST00000337451.8:ENST00000559571.1:ENST00000674289.1:ENST00000674477.1:ENST00000398013.7:ENST00000674330.1:ENST00000560039.1:ENST00000539711.2:ENST00000561072.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	39	2	4.80968	4.827975	4.84627	0.00679828	0.00254319	0.0711802	0.0465056
chr1	174419906	174420005	259729	0	+	0.272727	[0,0.28]	chr1	30818	254	INTRON	INTRON	RABGAP1L	ENSG00000152061.24	ENST00000357444.10:ENST00000251507.8:ENST00000681986.1:ENST00000367690.5:ENST00000526253.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	43	2	4.71017	4.82789	4.94561	0.0150263	0.0114708	0.0994339	0.0956037
chr2	151442669	151442758	893547	0	+	0.269663	[0,0.28]	chr2	98954	3	INTRON	INTRON	RIF1	ENSG00000080345.18	ENST00000453091.6:ENST00000428287.6:ENST00000444746.7:ENST00000243326.9:ENST00000414861.6:ENST00000430328.6	protein_coding	protein_coding	protein_coding	protein_coding	0	43	2	4.71017	4.82789	4.94561	0.0150263	0.0114708	0.0994339	0.0956037
chr22	40350461	40350559	7519834	0	+	0.367347	(0.35,0.378]	chr22	768253	3	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	ADSL	ENSG00000239900.14	ENST00000623632.4:ENST00000679723.1:ENST00000623063.3:ENST00000637666.2:ENST00000680978.1:ENST00000625194.4:ENST00000681159.1:ENST00000342312.9:ENST00000636714.1:ENST00000680444.1:ENST00000480775.3:ENST00000624503.1:ENST00000637669.1:ENST00000216194.11:ENST00000675622.1:ENST00000679656.1:ENST00000636265.1:ENST00000623978.3:ENST00000477111.2:ENST00000623287.4:ENST00000679609.1:ENST00000624474.1:ENST00000680378.1:ENST00000636124.1:ENST00000638161.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	40	2	4.66929	4.827450000000001	4.98561	0.00541617	0.00474226	0.066545000000000007	0.0600445
chr4	2480240	2480337	1911935	0	+	0.371134	(0.35,0.378]	chr4	191915	5	UTR5	UTR5:EXON_MRNA:INTRON	RNF4	ENSG00000063978.16	ENST00000503659.5:ENST00000504224.5:ENST00000541204.5:ENST00000502316.5:ENST00000509388.5:ENST00000507247.5:ENST00000314289.13:ENST00000511843.5:ENST00000509258.5:ENST00000513284.5:ENST00000504782.5:ENST00000507784.5:ENST00000513578.5:ENST00000511859.5:ENST00000511892.5:ENST00000513643.5:ENST00000503123.5:ENST00000509206.1:ENST00000506706.5:ENST00000511600.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	40	2	4.66929	4.827450000000001	4.98561	0.00541617	0.00474226	0.066545000000000007	0.0600445
chr12	108683085	108683185	5406290	0	-	0.4	(0.378,0.408]	chr12	516011	43	INTRON	INTRON	CORO1C	ENSG00000110880.11	ENST00000261401.8:ENST00000420959.6:ENST00000541050.5:ENST00000549384.5:ENST00000421578.6:ENST00000550542.5:ENST00000549772.5:ENST00000552871.5:ENST00000547294.5:ENST00000550032.5:ENST00000551550.5:ENST00000546571.5:ENST00000551044.1:ENST00000547170.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	42	2	4.21563	4.827275	5.43892	0.0315429	2.28412e-4	0.13151	0.0133228
chr11	481386	481485	4719218	0	+	0.414141	(0.408,0.44]	chr11	436026	9	INTRON	INTRON	PTDSS2	ENSG00000174915.12	ENST00000532614.5:ENST00000308020.6:ENST00000531520.5:ENST00000526878.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	80	2	4.00339	4.826945	5.6505	2.70553e-4	7.25052e-5	0.0150813	0.00709818
chr6	37978893	37978992	2858625	0	+	0.313131	(0.28,0.32]	chr6	270231	485	INTRON	INTRON	ZFAND3	ENSG00000156639.12	ENST00000287218.9:ENST00000373391.6:ENST00000474522.5:ENST00000373389.5	protein_coding	protein_coding	protein_coding	protein_coding	1	91	2	3.77927	4.826755	5.87424	4.43011e-4	3.56863e-4	0.0194241	0.0169148
chr22	41095587	41095687	7521523	0	+	0.3	(0.28,0.32]	chr22	768515	21	INTRON	INTRON	EP300	ENSG00000100393.14	ENST00000263253.9:ENST00000674155.1	protein_coding	protein_coding	protein_coding	protein_coding	0	42	2	4.50981	4.8266100000000005	5.14341	0.0275554	0.00185891	0.123904	0.039946
chr5	151794249	151794343	2522036	0	+	0.297872	(0.28,0.32]	chr5	241335	1	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	G3BP1	ENSG00000145907.16	ENST00000678070.1:ENST00000678964.1:ENST00000678925.1:ENST00000394123.7:ENST00000676978.1:ENST00000679289.1:ENST00000677493.1:ENST00000676644.1:ENST00000677757.1:ENST00000522761.6:ENST00000676827.1:ENST00000520177.6:ENST00000676634.1:ENST00000678854.1:ENST00000676911.1:ENST00000356245.8:ENST00000678646.1:ENST00000677381.1:ENST00000678904.1:ENST00000678910.1:ENST00000678101.1:ENST00000677105.1:ENST00000676813.1:ENST00000522367.6:ENST00000517947.5:ENST00000507878.7:ENST00000678369.1:ENST00000677433.1:ENST00000678564.1:ENST00000677923.1:ENST00000677323.1:ENST00000522666.1:ENST00000679057.1:ENST00000678750.1:ENST00000677687.1:ENST00000678372.1:ENST00000677211.1:ENST00000676590.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	42	2	4.50981	4.8266100000000005	5.14341	0.0275554	0.00185891	0.123904	0.039946
chr7	152359674	152359774	3680530	0	-	0.3	(0.28,0.32]	chr7	341660	6	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000682301.1:ENST00000452749.2:ENST00000680867.1:ENST00000683800.1:ENST00000684278.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	42	2	4.50981	4.8266100000000005	5.14341	0.0275554	0.00185891	0.123904	0.039946
chr2	61391078	61391177	1129750	0	-	0.424242	(0.408,0.44]	chr2	121474	74	INTRON	INTRON	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000453133.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	138	2	2.92893	4.826295	6.72366	4.29493e-4	1.05848e-7	0.0190249	1.43585e-4
chr1	77972009	77972108	494461	0	-	0.30303	(0.28,0.32]	chr1	58567	16	INTRON	INTRON	FUBP1	ENSG00000162613.17	ENST00000370768.7:ENST00000294623.8:ENST00000370767.5:ENST00000421641.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	42	2	4.6061	4.825945	5.04579	0.0102724	0.00714672	0.089002	0.0723634
chr1	220017127	220017227	638886	0	-	0.5	(0.476,0.515]	chr1	75264	57	INTRON	INTRON	EPRS1	ENSG00000136628.18	ENST00000366923.8:ENST00000609181.5:ENST00000477030.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	39	2	4.53023	4.825475000000001	5.12072	0.0119748	8.42139e-4	0.0899583	0.0263691
chr12	24841581	24841681	5296828	0	-	0.51	(0.476,0.515]	chr12	503842	1	SS5_PROX	SS5_PROX:INTRON	BCAT1	ENSG00000060982.15	ENST00000261192.12:ENST00000538118.5:ENST00000342945.9:ENST00000539282.5:ENST00000539780.5:ENST00000544418.1:ENST00000612790.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:processed_transcript	0	39	2	4.53023	4.825475000000001	5.12072	0.0119748	8.42139e-4	0.0899583	0.0263691
chr15	66515025	66515125	6050411	0	+	0.5	(0.476,0.515]	chr15	576127	1	SS3_PROX	SS3_PROX:INTRON	ZWILCH	ENSG00000174442.12	ENST00000535141.6:ENST00000613446.4:ENST00000446801.6:ENST00000565627.5:ENST00000563698.5:ENST00000564179.5:ENST00000567926.5:ENST00000307897.10:ENST00000565960.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	39	2	4.53023	4.825475000000001	5.12072	0.0119748	8.42139e-4	0.0899583	0.0263691
chrX	71299566	71299660	7678177	0	+	0.329787	(0.32,0.35]	chrX	786115	9	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	NONO	ENSG00000147140.17	ENST00000677446.1:ENST00000677274.1:ENST00000535149.5:ENST00000420903.6:ENST00000678335.1:ENST00000678830.1:ENST00000677826.1:ENST00000473525.2:ENST00000678437.1:ENST00000676499.1:ENST00000676495.1:ENST00000678323.1:ENST00000677766.1:ENST00000679267.1:ENST00000373856.8:ENST00000677879.1:ENST00000677245.1:ENST00000373841.5:ENST00000276079.13:ENST00000679029.1:ENST00000677218.1:ENST00000676797.1:ENST00000678660.1:ENST00000677014.1:ENST00000678231.1:ENST00000474431.5:ENST00000677612.1:ENST00000677977.1:ENST00000472185.1:ENST00000450092.6:ENST00000454976.2:ENST00000490044.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	200	2	4.68513	4.825345	4.96556	6.02562e-6	3.04975e-7	0.00184586	2.75296e-4
chr9	131141203	131141302	4215784	0	+	0.323232	(0.32,0.35]	chr9	386554	6	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	NUP214	ENSG00000126883.19	ENST00000695497.1:ENST00000695498.1:ENST00000695496.1:ENST00000695495.1:ENST00000695494.1:ENST00000695493.1:ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000525561.2:ENST00000651022.1:ENST00000695499.1:ENST00000530863.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	539	2	3.55118	4.82496	6.09874	8.38499e-8	8.4268e-10	1.25006e-4	4.33834e-6
chr4	53122135	53122235	2142898	0	-	0.51	(0.476,0.515]	chr4	211159	2009	INTRON	INTRON	SCFD2	ENSG00000184178.17	ENST00000401642.8:ENST00000388940.8	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	4.61519	4.824925	5.03466	0.00528365	0.00252065	0.0656295	0.0446195
chr7	64693244	64693342	3320157	0	+	0.489796	(0.476,0.515]	chr7	308689	9	INTRON	INTRON	ZNF107	ENSG00000196247.13	ENST00000395391.2:ENST00000684016.1:ENST00000620827.6:ENST00000423627.6:ENST00000613690.5:ENST00000344930.7:ENST00000682671.1:ENST00000683971.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	39	2	4.61519	4.824925	5.03466	0.00528365	0.00252065	0.0656295	0.0446195
chr3	196749050	196749150	1595585	0	+	0.33	(0.32,0.35]	chr3	165300	85	INTRON	INTRON	PAK2	ENSG00000180370.10	ENST00000327134.7	protein_coding	protein_coding	protein_coding	protein_coding	0	44	2	4.27113	4.824730000000001	5.37833	0.0199982	0.00174321	0.120668	0.0375363
chr6	110809465	110809565	3190398	0	-	0.4	(0.378,0.408]	chr6	297127	352	INTRON	INTRON	CDK19	ENSG00000155111.15	ENST00000323817.7:ENST00000368911.8:ENST00000413605.6:ENST00000457688.5:ENST00000460913.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	39	2	4.66338	4.824625	4.98587	0.0103469	0.00152268	0.0850389	0.0360297
chr6	34348470	34348570	3084332	0	-	0.58	(0.57,1]	chr6	288633	61	INTRON	INTRON	NUDT3:RPS10-NUDT3	ENSG00000272325.2:ENSG00000270800.3	ENST00000607016.2:ENST00000639725.1:ENST00000639877.1:ENST00000605528.2	protein_coding	protein_coding	protein_coding	protein_coding	0	30	2	4.67443	4.824505	4.97458	8.07515e-4	2.67728e-4	0.0258804	0.0149989
chr21	29049691	29049791	7390227	0	+	0.46	(0.44,0.476]	chr21	753034	2	SS3_PROX	SS3_PROX:INTRON	USP16	ENSG00000156256.15	ENST00000399975.7:ENST00000334352.8:ENST00000474835.5:ENST00000399976.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	129	2	2.90991	4.8244	6.73889	3.20441e-4	8.22801e-7	0.0159645	5.56494e-4
chr22	19911071	19911171	7556008	0	-	0.39	(0.378,0.408]	chr22	772521	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TXNRD2	ENSG00000184470.21	ENST00000400518.5:ENST00000542719.6:ENST00000494454.5:ENST00000474308.5:ENST00000400525.6:ENST00000400521.7:ENST00000400519.6:ENST00000635155.1:ENST00000491939.6:ENST00000334363.14:ENST00000475995.3:ENST00000484672.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	39	2	4.77105	4.824335	4.87762	0.00553849	0.00330823	0.0648867	0.0527031
chr22	30414763	30414863	7576803	0	-	0.39	(0.378,0.408]	chr22	775161	261	INTRON	INTRON	RNF215	ENSG00000099999.15	ENST00000431544.2	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	4.77105	4.824335	4.87762	0.00553849	0.00330823	0.0648867	0.0527031
chr6	84752540	84752639	3149857	0	-	0.393939	(0.378,0.408]	chr6	293636	41	INTRON	INTRON	TBX18	ENSG00000112837.17	ENST00000606784.5:ENST00000369663.10:ENST00000606521.1:ENST00000606325.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	39	2	4.77105	4.824335	4.87762	0.00553849	0.00330823	0.0648867	0.0527031
chr7	39959714	39959814	3310716	0	+	0.39	(0.378,0.408]	chr7	307478	69	INTRON	INTRON	CDK13	ENSG00000065883.17	ENST00000340829.10:ENST00000181839.10:ENST00000613626.4:ENST00000646039.1:ENST00000643859.1	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	4.77105	4.824335	4.87762	0.00553849	0.00330823	0.0648867	0.0527031
chr9	96389252	96389350	4295077	0	-	0.408163	(0.378,0.408]	chr9	394952	4	INTRON	INTRON	ZNF367	ENSG00000165244.7	ENST00000375256.5	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	4.77105	4.824335	4.87762	0.00553849	0.00330823	0.0648867	0.0527031
chr11	9390208	9390307	4729464	0	+	0.323232	(0.32,0.35]	chr11	437819	50	INTRON	INTRON	IPO7	ENSG00000205339.10	ENST00000379719.8:ENST00000533233.1:ENST00000527431.1:ENST00000630083.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	87	2	3.65187	4.824315	5.99676	5.49434e-4	1.55894e-4	0.0213049	0.0113565
chr20	41358961	41359056	7275354	0	+	0.568421	(0.515,0.57]	chr20	739585	2	UTR3	UTR3:EXON_MRNA	LPIN3	ENSG00000132793.12	ENST00000373257.8:ENST00000632009.1	protein_coding	protein_coding	protein_coding	protein_coding	1	74	2	3.62821	4.8242	6.02019	4.12866e-4	1.31473e-5	0.0181365	0.00286967
chr1	227250468	227250568	651039	0	-	0.28	[0,0.28]	chr1	77102	307	INTRON	INTRON	CDC42BPA	ENSG00000143776.20	ENST00000366766.8:ENST00000366769.7:ENST00000334218.9:ENST00000366767.7:ENST00000366764.8:ENST00000478573.6:ENST00000682551.1:ENST00000462553.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	98	2	3.63981	4.82394	6.00807	8.51767e-4	6.0063e-4	0.0264928	0.0226059
chr7	5200656	5200755	3272066	0	+	0.585859	(0.57,1]	chr7	304097	6	INTRON	INTRON	WIPI2	ENSG00000157954.15	ENST00000401525.7:ENST00000288828.9:ENST00000404704.7:ENST00000466014.5:ENST00000485854.5:ENST00000382384.6:ENST00000496867.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	31	2	4.37136	4.823685	5.27601	0.00345135	3.73525e-5	0.0517761	0.00489903
chr1	168013881	168013981	249271	0	+	0.45	(0.44,0.476]	chr1	29602	87	INTRON	INTRON	DCAF6	ENSG00000143164.16	ENST00000432587.6:ENST00000367843.7:ENST00000470721.5:ENST00000367840.4:ENST00000312263.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	469	2	4.5369	4.8233999999999995	5.1099	2.76371e-9	1.43807e-10	1.09574e-5	1.85837e-6
chr2	241750569	241750657	1056468	0	+	0.363636	(0.35,0.378]	chr2	112668	3	SS5_PROX	SS5_PROX:INTRON	D2HGDH	ENSG00000180902.18	ENST00000403782.5:ENST00000436747.5:ENST00000321264.9:ENST00000400769.6:ENST00000454048.1:ENST00000432449.1:ENST00000496252.5:ENST00000467427.5:ENST00000486953.5:ENST00000470343.5:ENST00000473126.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	90	2	3.67306	4.82323	5.9734	7.05001e-4	2.0866e-5	0.024224	0.00353198
chr2	26796370	26796469	715857	0	+	0.242424	[0,0.28]	chr2	82684	19	INTRON	INTRON	CENPA	ENSG00000115163.15	ENST00000460030.1	protein_coding	processed_transcript	protein_coding	processed_transcript	0	45	2	4.29536	4.822075	5.34879	0.0590175	0.00157139	0.167915	0.0365659
chr4	173377395	173377463	2082574	0	+	0.25	[0,0.28]	chr4	205795	2	UTR3	UTR3:EXON_MRNA	SAP30	ENSG00000164105.4	ENST00000296504.4	protein_coding	protein_coding	protein_coding	protein_coding	0	45	2	4.29536	4.822075	5.34879	0.0590175	0.00157139	0.167915	0.0365659
chr2	26234016	26234116	1085998	0	-	0.47	(0.44,0.476]	chr2	116061	4	SS5_PROX	SS5_PROX:INTRON	HADHA	ENSG00000084754.12	ENST00000380649.8:ENST00000644428.1:ENST00000492433.2:ENST00000643057.1:ENST00000645274.1:ENST00000643233.1:ENST00000643063.1:ENST00000646483.1:ENST00000471743.2:ENST00000461025.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	85	2	3.81101	4.822045	5.83308	3.0729e-4	2.77366e-5	0.0161362	0.00415129
chrX	65733780	65733878	7671754	0	+	0.5	(0.476,0.515]	chrX	785182	1	INTRON	INTRON	MSN	ENSG00000147065.17	ENST00000360270.7	protein_coding	protein_coding	protein_coding	protein_coding	0	44	2	4.10113	4.8216149999999995	5.5421	0.0226984	3.56777e-4	0.124921	0.0175154
chr1	62437800	62437900	131238	0	+	0.39	(0.378,0.408]	chr1	14889	4	SS5_PROX	SS5_PROX:INTRON	USP1	ENSG00000162607.13	ENST00000452143.5:ENST00000442679.5:ENST00000371146.5:ENST00000339950.5	protein_coding	protein_coding	protein_coding	protein_coding	1	81	2	3.72397	4.82141	5.91885	3.23378e-4	1.02858e-4	0.0159645	0.00915589
chr7	148701428	148701527	3443712	0	+	0.323232	(0.32,0.35]	chr7	321168	9	INTRON	INTRON	CUL1	ENSG00000055130.18	ENST00000409469.5:ENST00000662716.1:ENST00000665936.1:ENST00000663044.1:ENST00000602748.5:ENST00000663835.1:ENST00000655324.1:ENST00000662132.1:ENST00000325222.9:ENST00000656001.1:ENST00000666124.1:ENST00000671421.1:ENST00000671397.1:ENST00000662670.1:ENST00000660240.1:ENST00000662975.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	129	2	3.42792	4.820945	6.21397	2.20344e-4	8.83367e-6	0.0135673	0.00213707
chr1	100397823	100397923	173083	0	+	0.38	(0.378,0.408]	chr1	18824	66	INTRON	INTRON	CDC14A	ENSG00000079335.20	ENST00000646665.1:ENST00000644844.1:ENST00000635056.2:ENST00000647005.1:ENST00000647203.1:ENST00000644676.1:ENST00000361544.11:ENST00000370124.8:ENST00000336454.5:ENST00000644813.1:ENST00000455467.6:ENST00000646563.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	40	2	4.41169	4.8209	5.23011	0.0199606	5.72873e-4	0.109608	0.0217398
chr2	9494967	9495067	1063856	0	-	0.38	(0.378,0.408]	chr2	113464	2	SS3_PROX	SS3_PROX:INTRON	ADAM17	ENSG00000151694.14	ENST00000310823.8:ENST00000648548.1:ENST00000649227.1:ENST00000648857.1:ENST00000647979.1:ENST00000647610.1:ENST00000650116.1:ENST00000649686.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	40	2	4.41169	4.8209	5.23011	0.0199606	5.72873e-4	0.109608	0.0217398
chr4	88273649	88273747	2199452	0	-	0.397959	(0.378,0.408]	chr4	215820	21	INTRON	INTRON	PPM1K	ENSG00000163644.15	ENST00000608933.6:ENST00000295908.11:ENST00000508256.5:ENST00000510548.6:ENST00000511506.1:ENST00000506423.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	40	2	4.41169	4.8209	5.23011	0.0199606	5.72873e-4	0.109608	0.0217398
chr5	88220562	88220627	2669252	0	-	0.384615	(0.378,0.408]	chr5	252661	1	CDS_START	CDS_START:CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA	TMEM161B	ENSG00000164180.14	ENST00000514135.5:ENST00000296595.11:ENST00000511087.5:ENST00000510089.5:ENST00000506536.5:ENST00000511218.5:ENST00000512429.5:ENST00000507872.1:ENST00000509387.5:ENST00000503755.5:ENST00000513487.5:ENST00000515477.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	40	2	4.41169	4.8209	5.23011	0.0199606	5.72873e-4	0.109608	0.0217398
chr11	34896904	34897004	4942495	0	-	0.41	(0.408,0.44]	chr11	463112	14	INTRON	INTRON	APIP	ENSG00000149089.13	ENST00000395787.4:ENST00000527830.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	39	2	4.51604	4.82086	5.12568	0.0137419	7.90919e-4	0.0949306	0.0258324
chr11	78391073	78391173	5000120	0	-	0.42	(0.408,0.44]	chr11	472472	266	INTRON	INTRON	GAB2	ENSG00000033327.13	ENST00000361507.5:ENST00000526030.1:ENST00000528886.5:ENST00000530915.1:ENST00000534823.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	39	2	4.51604	4.82086	5.12568	0.0137419	7.90919e-4	0.0949306	0.0258324
chr1	151057485	151057584	553367	0	-	0.50505	(0.476,0.515]	chr1	65183	3	INTRON	INTRON	CDC42SE1	ENSG00000197622.13	ENST00000439374.6:ENST00000540998.5:ENST00000357235.6:ENST00000483763.5:ENST00000492796.5:ENST00000470278.5:ENST00000491825.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	113	2	3.39465	4.820645	6.24664	1.63554e-4	2.70752e-6	0.0116917	0.00105261
chr13	114258374	114258466	5550666	0	+	0.369565	(0.35,0.378]	chr13	530502	8	INTRON	INTRON	CDC16	ENSG00000130177.16	ENST00000360383.7:ENST00000628084.2:ENST00000356221.8:ENST00000650489.1:ENST00000375310.5:ENST00000252457.9:ENST00000375308.5:ENST00000252458.6:ENST00000484907.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	83	2	3.8412	4.820335	5.79947	2.36402e-4	1.97447e-4	0.0140941	0.0122531
chr9	125348391	125348490	4199147	0	+	0.424242	(0.408,0.44]	chr9	383269	10	INTRON	INTRON	GAPVD1	ENSG00000165219.23	ENST00000297933.11:ENST00000470056.5:ENST00000394105.6:ENST00000394083.6:ENST00000495955.5:ENST00000394104.6:ENST00000312123.13:ENST00000474637.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	39	2	4.62009	4.820185	5.02028	0.00504155	0.00303216	0.0646039	0.0493883
chrX	110044421	110044521	7700451	0	+	0.44	(0.408,0.44]	chrX	788130	399	INTRON	INTRON	TMEM164	ENSG00000157600.12	ENST00000372072.7:ENST00000471255.5:ENST00000372073.5:ENST00000372068.7:ENST00000288381.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	39	2	4.62009	4.820185	5.02028	0.00504155	0.00303216	0.0646039	0.0493883
chr15	28314845	28314945	6123994	0	-	0.32	(0.28,0.32]	chr15	583407	150	INTRON	INTRON	HERC2	ENSG00000128731.18	ENST00000261609.13:ENST00000564734.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	91	2	3.89776	4.82005	5.7423400000000004	7.31742e-4	2.03846e-4	0.0248722	0.0124395
chr5	159272521	159272621	2528548	0	+	0.39	(0.378,0.408]	chr5	241910	4	SS5_PROX	SS5_PROX:INTRON	UBLCP1	ENSG00000164332.8	ENST00000296786.8	protein_coding	protein_coding	protein_coding	protein_coding	0	40	2	4.51854	4.81991	5.12128	0.00748824	0.00251746	0.0772645	0.0446195
chr5	10366134	10366234	2317771	0	+	0.52	(0.515,0.57]	chr5	224612	111	INTRON	INTRON	MARCHF6	ENSG00000145495.16	ENST00000274140.10:ENST00000449913.6:ENST00000502795.5:ENST00000511802.5:ENST00000503788.5:ENST00000640713.1:ENST00000510872.5:ENST00000507863.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	37	2	4.51	4.81987	5.12974	0.00809449	4.54392e-4	0.0766625	0.0192381
chr7	5416370	5416469	3472009	0	-	0.494949	(0.476,0.515]	chr7	324678	91	INTRON	INTRON	TNRC18	ENSG00000182095.15	ENST00000399537.8:ENST00000430969.6:ENST00000399434.2	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	4.32915	4.819865	5.31058	0.0124637	9.15544e-4	0.0973643	0.0278396
chrX	49175284	49175381	7816995	0	-	0.494845	(0.476,0.515]	chrX	797177	6	UTR3	UTR3:EXON_MRNA	PRICKLE3	ENSG00000012211.13	ENST00000599218.6:ENST00000540849.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	41	2	4.32915	4.819865	5.31058	0.0124637	9.15544e-4	0.0973643	0.0278396
chr21	9113585	9113685	7426475	0	-	0.45	(0.44,0.476]	chr21	757579	253	INTRON	INTRON	TEKT4P2	ENSG00000188681.12	ENST00000690061.1:ENST00000689141.1:ENST00000688310.1:ENST00000687537.1:ENST00000690096.1:ENST00000687888.1:ENST00000690389.1:ENST00000684989.1:ENST00000416067.6:ENST00000693307.1:ENST00000692383.1:ENST00000685666.1:ENST00000688451.1:ENST00000691190.1:ENST00000685532.1:ENST00000687488.1:ENST00000690713.1:ENST00000691834.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	41	2	4.23755	4.819535	5.40152	0.0263357	2.39829e-4	0.122221	0.0136403
chr5	79655660	79655760	2399173	0	+	0.28	[0,0.28]	chr5	231738	61	INTRON	INTRON	TENT2	ENSG00000164329.14	ENST00000423041.6:ENST00000504233.5:ENST00000453514.6:ENST00000428308.6:ENST00000296783.7:ENST00000504982.1:ENST00000513735.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	43	2	4.5461	4.819455	5.09281	0.0365918	0.00372534	0.138959	0.0561984
chr6	79059377	79059477	3141890	0	-	0.28	[0,0.28]	chr6	292878	160	INTRON	INTRON	PHIP	ENSG00000146247.14	ENST00000275034.5	protein_coding	protein_coding	protein_coding	protein_coding	0	43	2	4.5461	4.819455	5.09281	0.0365918	0.00372534	0.138959	0.0561984
chr11	68496958	68497058	4817695	0	+	0.49	(0.476,0.515]	chr11	448907	358	INTRON	INTRON	PPP6R3	ENSG00000110075.15	ENST00000530427.5:ENST00000528635.5:ENST00000529907.5:ENST00000533127.5:ENST00000534534.5:ENST00000529344.5:ENST00000524845.5:ENST00000393800.7:ENST00000265637.8:ENST00000524904.5:ENST00000393801.7:ENST00000265636.9:ENST00000529710.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	84	2	3.77334	4.819395	5.86545	3.52709e-4	2.46461e-5	0.0174637	0.00389532
chr15	63711087	63711186	6199644	0	-	0.434343	(0.408,0.44]	chr15	591306	39	INTRON	INTRON	HERC1	ENSG00000103657.14	ENST00000443617.7:ENST00000561400.1	protein_coding	protein_coding	protein_coding	protein_coding	1	85	2	3.62972	4.81938	6.00904	7.19047e-4	1.03233e-5	0.0246202	0.00235018
chr17	57338023	57338123	6633569	0	+	0.3	(0.28,0.32]	chr17	648024	273	INTRON	INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000581776.5:ENST00000674961.1:ENST00000582453.5:ENST00000675656.1:ENST00000322684.7:ENST00000579590.5:ENST00000676073.1:ENST00000675822.1:ENST00000442934.6:ENST00000579180.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	43	2	4.4334	4.819	5.2046	0.0163355	0.00448664	0.109464	0.0593175
chr1	225416026	225416123	645632	0	-	0.515464	(0.515,0.57]	chr1	76363	3	INTRON	INTRON	LBR	ENSG00000143815.15	ENST00000272163.9:ENST00000338179.6:ENST00000651341.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	76	2	3.7003	4.81897	5.93764	3.73715e-4	6.58036e-6	0.0179087	0.00181159
chr19	5620220	5620318	7124338	0	-	0.214286	[0,0.28]	chr19	717040	34	INTRON	INTRON	SAFB2	ENSG00000130254.12	ENST00000252542.9:ENST00000591120.1:ENST00000590262.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	43	2	4.63523	4.81893	5.00263	0.0139836	0.013055	0.10247	0.093385
chr17	81069911	81070010	6689603	0	+	0.414141	(0.408,0.44]	chr17	653707	57	INTRON	INTRON	BAIAP2	ENSG00000175866.16	ENST00000321280.11:ENST00000576470.5:ENST00000575750.5:ENST00000428708.7:ENST00000572329.5:ENST00000575989.5:ENST00000570913.5:ENST00000575712.5:ENST00000575245.5:ENST00000321300.10:ENST00000435091.7:ENST00000573894.5:ENST00000571530.5:ENST00000572918.5:ENST00000573017.5:ENST00000575958.5:ENST00000573659.5:ENST00000572073.5:ENST00000573677.5:ENST00000574804.5:ENST00000576364.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	44	2	4.00385	4.8188949999999995	5.63394	0.0454568	7.78928e-5	0.149888	0.00735438
chr1	155789064	155789164	563755	0	-	0.47	(0.44,0.476]	chr1	67318	33	INTRON	INTRON	GON4L	ENSG00000116580.20	ENST00000368331.6:ENST00000615926.4:ENST00000437809.5:ENST00000271883.9:ENST00000361040.9:ENST00000622608.2:ENST00000471341.5:ENST00000482386.5:ENST00000467009.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	79	2	3.8307	4.818585000000001	5.80647	1.81621e-4	1.22335e-4	0.0117212	0.00993581
chr1	61188023	61188123	128452	0	+	0.48	(0.476,0.515]	chr1	14778	551	INTRON	INTRON	NFIA	ENSG00000162599.17	ENST00000371191.5:ENST00000664495.1:ENST00000476646.5:ENST00000407417.7:ENST00000479364.1:ENST00000371189.8:ENST00000670151.1:ENST00000664149.1:ENST00000662015.1:ENST00000403491.8:ENST00000371187.7:ENST00000485903.6:ENST00000371185.6:ENST00000371184.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	80	2	3.62464	4.8185649999999995	6.01249	5.079e-4	4.02459e-5	0.0202328	0.00539487
chr19	19014625	19014725	7153622	0	-	0.45	(0.44,0.476]	chr19	723055	39	INTRON	INTRON	SUGP2	ENSG00000064607.17	ENST00000594773.5:ENST00000337018.10:ENST00000452918.7:ENST00000330854.15:ENST00000601879.5:ENST00000600239.5:ENST00000600377.1:ENST00000598240.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	41	2	4.33346	4.81818	5.3029	0.0120349	0.00102616	0.0962115	0.029231300000000002
chr22	19397591	19397691	7554079	0	-	0.47	(0.44,0.476]	chr22	772287	2	SS5_PROX	SS5_PROX:INTRON	HIRA:C22orf39	ENSG00000100084.14:ENSG00000242259.9	ENST00000263208.5:ENST00000340170.8:ENST00000509549.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	41	2	4.33346	4.81818	5.3029	0.0120349	0.00102616	0.0962115	0.029231300000000002
chr2	151798696	151798796	1243437	0	-	0.29	(0.28,0.32]	chr2	132026	64	INTRON	INTRON	ARL5A	ENSG00000162980.17	ENST00000446896.7	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	7	219	2	2.60939	4.818145	7.0269	1.61727e-4	2.1778e-6	0.0109774	0.00102673
chr18	77979737	77979837	6990152	0	-	0.56	(0.515,0.57]	chr18	691893	1	SS3_PROX	SS3_PROX:INTRON	LINC01029	ENSG00000265843.3	ENST00000657337.1:ENST00000669341.1:ENST00000671271.1:ENST00000668585.1:ENST00000666771.1:ENST00000667842.1:ENST00000661306.1:ENST00000662598.1:ENST00000662109.1:ENST00000662085.1:ENST00000583106.1:ENST00000582805.1:ENST00000656930.1	lncRNA	lncRNA	lncRNA	lncRNA	4	138	2	2.57912	4.818075	7.05703	6.01485e-4	1.52107e-8	0.0223465	3.85787e-5
chr6	157878376	157878476	3016319	0	+	0.38	(0.378,0.408]	chr6	281379	15	INTRON	INTRON	SNX9	ENSG00000130340.17	ENST00000680863.1:ENST00000679814.1:ENST00000680464.1:ENST00000681186.1:ENST00000679732.1:ENST00000681183.1:ENST00000681534.1:ENST00000681651.1:ENST00000680089.1:ENST00000680078.1:ENST00000680974.1:ENST00000680095.1:ENST00000680015.1:ENST00000681138.1:ENST00000392185.8:ENST00000679790.1:ENST00000680495.1:ENST00000679691.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	161	2	2.80865	4.817745	6.82684	3.37643e-4	6.62222e-8	0.0170719	1.10609e-4
chr19	34184018	34184117	7050918	0	+	0.393939	(0.378,0.408]	chr19	703187	109	INTRON	INTRON	LSM14A	ENSG00000257103.9	ENST00000544216.8:ENST00000589878.5:ENST00000540746.6:ENST00000433627.9:ENST00000586157.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	39	2	4.58427	4.81759	5.05091	0.0128325	0.00118558	0.0926667	0.031662
chr3	119448357	119448455	1791829	0	-	0.387755	(0.378,0.408]	chr3	179934	8	INTRON	INTRON	TMEM39A	ENSG00000176142.13	ENST00000319172.10:ENST00000438581.6:ENST00000491685.5:ENST00000486159.5:ENST00000486235.5:ENST00000468676.5:ENST00000490099.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	39	2	4.58427	4.81759	5.05091	0.0128325	0.00118558	0.0926667	0.031662
chr7	135484688	135484788	3648707	0	-	0.38	(0.378,0.408]	chr7	339187	459	INTRON	INTRON	CNOT4	ENSG00000080802.20	ENST00000541284.6:ENST00000451834.5:ENST00000423368.6:ENST00000361528.8:ENST00000428680.6:ENST00000315544.6:ENST00000491203.5:ENST00000498534.5:ENST00000465721.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	39	2	4.58427	4.81759	5.05091	0.0128325	0.00118558	0.0926667	0.031662
chr7	157340756	157340856	3455338	0	+	0.52	(0.515,0.57]	chr7	323052	3	INTRON	INTRON	DNAJB6	ENSG00000105993.15	ENST00000441561.5:ENST00000429029.6:ENST00000262177.9:ENST00000486083.6:ENST00000417758.5:ENST00000459889.5:ENST00000443280.5:ENST00000488001.5:ENST00000441291.5:ENST00000437030.5:ENST00000412557.5:ENST00000453383.5:ENST00000439402.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	76	2	3.66151	4.817545	5.97358	4.49566e-4	5.28296e-6	0.0196044	0.00158573
chr17	2625020	2625120	6547751	0	+	0.35	(0.32,0.35]	chr17	635219	108	INTRON	INTRON	PAFAH1B1	ENSG00000007168.14	ENST00000576586.5:ENST00000397195.10:ENST00000676201.1:ENST00000575477.5:ENST00000675621.1:ENST00000676353.1:ENST00000674717.1:ENST00000675202.1:ENST00000675764.1:ENST00000674608.1:ENST00000676077.1:ENST00000676098.1:ENST00000572915.6:ENST00000570400.1:ENST00000571289.1:ENST00000675430.1:ENST00000675331.1:ENST00000676188.1:ENST00000574816.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	41	2	4.45629	4.817254999999999	5.17822	0.0246089	0.00115625	0.12011	0.0313436
chr3	138711217	138711315	1830254	0	-	0.326531	(0.32,0.35]	chr3	183999	36	INTRON	INTRON	PIK3CB	ENSG00000051382.9	ENST00000674063.1:ENST00000289153.6:ENST00000477593.5:ENST00000469284.6:ENST00000544716.5:ENST00000462898.5:ENST00000493568.5:ENST00000473435.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	41	2	4.45629	4.817254999999999	5.17822	0.0246089	0.00115625	0.12011	0.0313436
chr1	167944525	167944625	248567	0	+	0.31	(0.28,0.32]	chr1	29536	69	INTRON	INTRON	DCAF6	ENSG00000143164.16	ENST00000450548.5:ENST00000470919.5:ENST00000432587.6:ENST00000367843.7:ENST00000470721.5:ENST00000367840.4:ENST00000312263.10:ENST00000455334.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	41	2	4.73474	4.8171800000000005	4.89962	0.0162835	0.00425206	0.101453	0.0595557
chr12	108540482	108540581	5405547	0	-	0.292929	(0.28,0.32]	chr12	515889	10	INTRON	INTRON	SART3	ENSG00000075856.12	ENST00000546815.6:ENST00000651280.1:ENST00000228284.8:ENST00000546728.5:ENST00000431469.6:ENST00000547528.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	41	2	4.73474	4.8171800000000005	4.89962	0.0162835	0.00425206	0.101453	0.0595557
chr16	74964032	74964128	6527082	0	-	0.3125	(0.28,0.32]	chr16	632153	4	INTRON	INTRON	WDR59	ENSG00000103091.15	ENST00000262144.11:ENST00000616369.4:ENST00000536050.5:ENST00000568462.5:ENST00000568323.5:ENST00000563111.2:ENST00000562331.5:ENST00000564859.1:ENST00000569421.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	41	2	4.73474	4.8171800000000005	4.89962	0.0162835	0.00425206	0.101453	0.0595557
chr5	105386660	105386760	2696293	0	-	0.29	(0.28,0.32]	chr5	254248	1404	INTRON	INTRON	ENSG00000251574	ENSG00000251574.8	ENST00000503650.1	lncRNA	lncRNA	lncRNA	lncRNA	0	41	2	4.73474	4.8171800000000005	4.89962	0.0162835	0.00425206	0.101453	0.0595557
chr8	67164701	67164797	3777683	0	+	0.291667	(0.28,0.32]	chr8	350438	3	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	CSPP1	ENSG00000104218.16	ENST00000676113.1:ENST00000675306.2:ENST00000678156.1:ENST00000262210.11:ENST00000678017.1:ENST00000675869.1:ENST00000678542.1:ENST00000677619.1:ENST00000676605.1:ENST00000676471.1:ENST00000677256.1:ENST00000676847.1:ENST00000677009.1:ENST00000676317.1:ENST00000677592.1:ENST00000676573.1:ENST00000678318.1:ENST00000677473.1:ENST00000674993.1:ENST00000679226.1:ENST00000676882.1:ENST00000675955.1:ENST00000677430.1:ENST00000678616.1:ENST00000679112.1:ENST00000678645.1:ENST00000677845.1:ENST00000676858.1:ENST00000678747.1:ENST00000519668.1:ENST00000677855.1:ENST00000677052.1:ENST00000679274.1:ENST00000678635.1:ENST00000676804.1:ENST00000679295.1:ENST00000677964.1:ENST00000676968.1:ENST00000678895.1:ENST00000678723.1:ENST00000677131.1:ENST00000521324.3:ENST00000675990.1:ENST00000521168.5:ENST00000677697.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	41	2	4.73474	4.8171800000000005	4.89962	0.0162835	0.00425206	0.101453	0.0595557
chr13	94583933	94584032	5636890	0	-	0.313131	(0.28,0.32]	chr13	536949	3	INTRON	INTRON	TGDS	ENSG00000088451.11	ENST00000261296.7:ENST00000498294.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	41	2	4.80255	4.8171	4.83165	0.0137406	0.00527257	0.0949306	0.0656295
chr6	2888865	2888964	3047325	0	-	0.313131	(0.28,0.32]	chr6	283507	17	UTR3	UTR3:EXON_MRNA	SERPINB9	ENSG00000170542.6	ENST00000380698.5	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	4.80255	4.8171	4.83165	0.0137406	0.00527257	0.0949306	0.0656295
chr17	5579266	5579366	6715797	0	-	0.38	(0.378,0.408]	chr17	658470	189	INTRON	INTRON	NLRP1	ENSG00000091592.16	ENST00000544378.6:ENST00000262467.10:ENST00000613500.4:ENST00000572272.6:ENST00000571451.6:ENST00000269280.8:ENST00000619223.4:ENST00000617618.4:ENST00000345221.7:ENST00000354411.7:ENST00000577119.5:ENST00000571307.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	39	2	4.69169	4.817095	4.9425	0.00452675	0.00432302	0.0599409	0.0595107
chr11	68923717	68923816	4819225	0	+	0.474747	(0.44,0.476]	chr11	449187	55	INTRON	INTRON	IGHMBP2	ENSG00000132740.10	ENST00000675615.1:ENST00000676228.1:ENST00000255078.8:ENST00000676173.1:ENST00000674955.1:ENST00000675118.1:ENST00000675305.1:ENST00000675648.1:ENST00000674775.1:ENST00000675684.1:ENST00000675493.1:ENST00000674745.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	40	2	4.43525	4.817025	5.1988	0.00897296	0.00151532	0.0849778	0.0352794
chr19	10257225	10257325	7012347	0	+	0.47	(0.44,0.476]	chr19	696496	4	SS5_PROX	SS5_PROX:INTRON	MRPL4	ENSG00000105364.14	ENST00000592514.5:ENST00000591054.5:ENST00000307422.9:ENST00000590150.5:ENST00000590669.5:ENST00000253099.11:ENST00000393733.6:ENST00000588502.5:ENST00000590702.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	40	2	4.43525	4.817025	5.1988	0.00897296	0.00151532	0.0849778	0.0352794
chr2	135345461	135345549	1231638	0	-	0.261364	[0,0.28]	chr2	131215	1	SSB_ADJ	SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ZRANB3	ENSG00000121988.18	ENST00000264159.11:ENST00000401392.5:ENST00000536680.5:ENST00000403017.2:ENST00000452187.6:ENST00000472452.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	44	2	4.47254	4.81692	5.1613	0.020991	0.00866441	0.122348	0.0787025
chr11	108225444	108225543	4857109	0	+	0.414141	(0.408,0.44]	chr11	453073	25	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	ATM	ENSG00000149311.20	ENST00000683488.1:ENST00000675843.1:ENST00000683174.1:ENST00000527805.6:ENST00000675595.1:ENST00000683468.1:ENST00000532931.5:ENST00000530958.5:ENST00000452508.6:ENST00000683914.1:ENST00000683150.1:ENST00000640388.1:ENST00000639953.1:ENST00000639240.1:ENST00000278616.9:ENST00000526567.5:ENST00000682430.1:ENST00000601453.2:ENST00000684037.1:ENST00000682516.1:ENST00000684061.1:ENST00000684179.1:ENST00000682956.1:ENST00000684029.1:ENST00000682147.1:ENST00000682465.1:ENST00000638443.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	114	2	3.17443	4.816879999999999	6.45933	5.19132e-4	6.42507e-7	0.0209322	4.38818e-4
chr7	20194239	20194339	3497319	0	-	0.33	(0.32,0.35]	chr7	326593	93	INTRON	INTRON	MACC1	ENSG00000183742.13	ENST00000400331.10:ENST00000332878.8:ENST00000471019.1:ENST00000483317.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	41	2	4.55661	4.81645	5.07629	0.00927858	0.00468114	0.0855292	0.0600108
chrX	53419025	53419123	7820164	0	-	0.326531	(0.32,0.35]	chrX	797770	35	INTRON	INTRON	SMC1A	ENSG00000072501.19	ENST00000375340.10:ENST00000322213.9:ENST00000675504.1:ENST00000674590.1:ENST00000675065.1:ENST00000463684.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	41	2	4.55661	4.81645	5.07629	0.00927858	0.00468114	0.0855292	0.0600108
chr2	174359036	174359135	1270978	0	-	0.333333	(0.32,0.35]	chr2	134338	1	INTRON	INTRON	CIR1	ENSG00000138433.16	ENST00000342016.8:ENST00000377973.4	protein_coding	protein_coding	protein_coding	protein_coding	0	45	2	4.06299	4.81603	5.56907	0.0559439	2.27532e-4	0.165463	0.0133228
chr1	201853497	201853597	292004	0	+	0.37	(0.35,0.378]	chr1	33555	4	SS5_PROX	SS5_PROX:INTRON	IPO9	ENSG00000198700.10	ENST00000361565.9	protein_coding	protein_coding	protein_coding	protein_coding	0	40	2	4.48184	4.816	5.15016	0.0191702	9.78549e-4	0.108861	0.0287765
chr7	54752249	54752329	3534270	0	-	0.25	[0,0.28]	chr7	329611	1	UTR3	UTR3:EXON_MRNA	SEC61G	ENSG00000132432.14	ENST00000395535.7:ENST00000415949.5:ENST00000352861.9:ENST00000450622.1	protein_coding	protein_coding	protein_coding	protein_coding	1	108	2	3.27708	4.815805	6.35453	0.00517359	2.13329e-5	0.0631676	0.00357657
chr1	70288002	70288101	480194	0	-	0.343434	(0.32,0.35]	chr1	57720	108	INTRON	INTRON	ANKRD13C	ENSG00000118454.13	ENST00000370944.9:ENST00000262346.6	protein_coding	protein_coding	protein_coding	protein_coding	0	40	2	4.76501	4.815615	4.86622	0.0114287	0.00354075	0.0886611	0.0546236
chr15	20382892	20382992	6117673	0	-	0.34	(0.32,0.35]	chr15	582343	35	EXON_LNCRNA	EXON_LNCRNA	HERC2P3	ENSG00000180229.12	ENST00000426501.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	40	2	4.76501	4.815615	4.86622	0.0114287	0.00354075	0.0886611	0.0546236
chr3	183985935	183986031	1882300	0	-	0.427083	(0.408,0.44]	chr3	188197	6	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	ABCC5	ENSG00000114770.17	ENST00000334444.11:ENST00000265586.10:ENST00000437205.5:ENST00000382494.6:ENST00000392579.6:ENST00000443376.5:ENST00000427120.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	160	2	2.79191	4.8155850000000004	6.83926	9.68352e-5	5.24082e-7	0.00826847	4.21981e-4
chr10	28553443	28553543	4414008	0	+	0.2	[0,0.28]	chr10	407148	150	INTRON	INTRON	WAC	ENSG00000095787.24	ENST00000680735.1:ENST00000375664.8:ENST00000428935.6:ENST00000651598.1:ENST00000628285.3:ENST00000681112.1:ENST00000679570.1:ENST00000375646.5:ENST00000354911.9:ENST00000347934.8:ENST00000420266.6:ENST00000651885.1:ENST00000651441.1:ENST00000679398.1:ENST00000424454.5:ENST00000442148.6:ENST00000448193.5:ENST00000414108.6:ENST00000679428.1:ENST00000439676.5:ENST00000345541.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	164	2	3.39127	4.81522	6.23917	2.51349e-4	5.23054e-5	0.0146599	0.00590498
chr3	179184642	179184742	1566164	0	+	0.43	(0.408,0.44]	chr3	161904	346	INTRON	INTRON	PIK3CA	ENSG00000121879.6	ENST00000477735.1:ENST00000263967.4:ENST00000643187.1:ENST00000675786.1:ENST00000468036.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	40	2	4.33238	4.815085	5.29779	0.0218901	3.80479e-4	0.11491	0.0176313
chr2	176294363	176294463	925462	0	+	0.53	(0.515,0.57]	chr2	101669	236	INTRON	INTRON	MTX2	ENSG00000128654.14	ENST00000420864.5:ENST00000249442.11:ENST00000423461.6:ENST00000443241.5:ENST00000452865.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	76	2	3.84583	4.81502	5.78421	1.82082e-4	1.63043e-5	0.0122264	0.00304426
chr20	21316219	21316319	7248266	0	+	0.35	(0.32,0.35]	chr20	735885	124	INTRON	INTRON	XRN2	ENSG00000088930.8	ENST00000377191.5	protein_coding	protein_coding	protein_coding	protein_coding	0	40	2	4.6938	4.814025	4.93425	0.0137794	0.00281048	0.0949306	0.0488779
chr4	48602705	48602789	2137828	0	-	0.321429	(0.32,0.35]	chr4	210924	2	INTRON	INTRON	FRYL	ENSG00000075539.15	ENST00000358350.9:ENST00000503238.6:ENST00000507711.5:ENST00000673760.1:ENST00000506685.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	40	2	4.6938	4.814025	4.93425	0.0137794	0.00281048	0.0949306	0.0488779
chr5	177163095	177163194	2553993	0	+	0.323232	(0.32,0.35]	chr5	243927	258	INTRON	INTRON	NSD1	ENSG00000165671.22	ENST00000508896.6:ENST00000689549.1:ENST00000354179.9:ENST00000686993.1:ENST00000689326.1:ENST00000439151.7:ENST00000510954.6:ENST00000689345.1:ENST00000347982.9:ENST00000687453.1:ENST00000685206.1:ENST00000638627.3:ENST00000644863.2:ENST00000688613.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	40	2	4.6938	4.814025	4.93425	0.0137794	0.00281048	0.0949306	0.0488779
chr8	53971957	53972056	3952788	0	-	0.323232	(0.32,0.35]	chr8	362510	11	INTRON	INTRON	TCEA1	ENSG00000187735.15	ENST00000396401.7:ENST00000521604.7:ENST00000521086.6:ENST00000522635.5:ENST00000522397.5:ENST00000640382.1:ENST00000640041.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	40	2	4.6938	4.814025	4.93425	0.0137794	0.00281048	0.0949306	0.0488779
chr8	119750326	119750426	4039205	0	-	0.33	(0.32,0.35]	chr8	368254	28	INTRON	INTRON	TAF2	ENSG00000064313.13	ENST00000378164.7:ENST00000685503.1:ENST00000690808.1:ENST00000692707.1:ENST00000685202.1:ENST00000688645.1:ENST00000685684.1:ENST00000689399.1:ENST00000685876.1:ENST00000689341.1:ENST00000691057.1:ENST00000686098.1:ENST00000690922.1:ENST00000685663.1:ENST00000692518.1:ENST00000688037.1:ENST00000691237.1:ENST00000684862.1:ENST00000685755.1:ENST00000691880.1:ENST00000523904.2:ENST00000689919.1:ENST00000685824.1:ENST00000685993.1:ENST00000692829.1:ENST00000692916.1:ENST00000692711.1:ENST00000529653.2:ENST00000686879.1:ENST00000685235.1:ENST00000690144.1:ENST00000689164.1:ENST00000691847.1:ENST00000519355.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	40	2	4.6938	4.814025	4.93425	0.0137794	0.00281048	0.0949306	0.0488779
chr4	123129978	123130078	2037714	0	+	0.41	(0.408,0.44]	chr4	202384	278	INTRON	INTRON	SPATA5	ENSG00000145375.9	ENST00000675612.1:ENST00000274008.5	protein_coding	protein_coding	protein_coding	protein_coding	0	40	2	4.4358	4.81391	5.19202	0.00893097	0.0016671	0.0849778	0.0369207
chr15	29820674	29820774	6125405	0	-	0.35	(0.32,0.35]	chr15	583585	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	TJP1	ENSG00000104067.17	ENST00000346128.10:ENST00000614355.5:ENST00000400011.6:ENST00000356107.11:ENST00000677774.1:ENST00000545208.6:ENST00000495972.6:ENST00000473741.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	40	2	4.79482	4.813845	4.83287	0.0095071	0.00447781	0.0817766	0.0610799
chr16	89106234	89106333	6419345	0	+	0.333333	(0.32,0.35]	chr16	616037	31	INTRON	INTRON	ACSF3	ENSG00000176715.17	ENST00000537895.5:ENST00000317447.9:ENST00000614302.5:ENST00000540697.5:ENST00000406948.7:ENST00000378345.8:ENST00000542688.5:ENST00000649953.1:ENST00000544543.5:ENST00000538340.5:ENST00000543676.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	40	2	4.79482	4.813845	4.83287	0.0095071	0.00447781	0.0817766	0.0610799
chr2	229888789	229888889	1341330	0	-	0.35	(0.32,0.35]	chr2	140456	83	INTRON	INTRON	TRIP12	ENSG00000153827.14	ENST00000675453.1:ENST00000675903.1:ENST00000283943.9:ENST00000675423.1:ENST00000389044.8:ENST00000389045.7:ENST00000479037.5:ENST00000409677.5:ENST00000435716.5:ENST00000428959.5:ENST00000430954.5:ENST00000343290.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	40	2	4.79482	4.813845	4.83287	0.0095071	0.00447781	0.0817766	0.0610799
chr9	77253248	77253347	4145700	0	+	0.323232	(0.32,0.35]	chr9	377856	5	INTRON	INTRON	VPS13A	ENSG00000197969.14	ENST00000376636.7:ENST00000360280.8:ENST00000643348.1:ENST00000645632.1	protein_coding	protein_coding	protein_coding	protein_coding	0	40	2	4.79482	4.813845	4.83287	0.0095071	0.00447781	0.0817766	0.0610799
chr21	36879662	36879762	7460690	0	-	0.46	(0.44,0.476]	chr21	760114	1120	INTRON	INTRON	HLCS	ENSG00000159267.17	ENST00000674895.3:ENST00000336648.8:ENST00000612277.4:ENST00000399120.5:ENST00000675307.1:ENST00000675057.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	42	2	4.12843	4.813605	5.49878	0.0337192	1.52058e-4	0.134145	0.0106137
chr1	230086491	230086591	334271	0	+	0.41	(0.408,0.44]	chr1	38926	187	INTRON	INTRON	GALNT2	ENSG00000143641.10	ENST00000494106.1:ENST00000366672.5:ENST00000488903.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	105	2	3.40063	4.813245	6.22586	1.06576e-4	1.7283e-5	0.00874587	0.00333191
chr1	149202089	149202189	547912	0	-	0.29	(0.28,0.32]	chr1	64451	6	INTRON	INTRON	ENSG00000215861	ENSG00000215861.7	ENST00000685012.1:ENST00000313342.8:ENST00000663163.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	42	2	4.4263	4.81236	5.19842	0.0330296	0.00152333	0.133816	0.0360297
chr16	89478053	89478153	6543477	0	-	0.3	(0.28,0.32]	chr16	634281	464	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	148	2	3.34135	4.812235	6.28312	8.10771e-5	4.61914e-5	0.00807106	0.00553779
chr10	73442984	73443083	4649608	0	-	0.323232	(0.32,0.35]	chr10	427858	27	INTRON	INTRON	PPP3CB	ENSG00000107758.16	ENST00000360663.10:ENST00000394828.6:ENST00000394829.6:ENST00000430762.6	protein_coding	protein_coding	protein_coding	protein_coding	1	86	2	3.8861	4.812165	5.73823	4.5635e-4	1.80108e-4	0.0196892	0.0116696
chr1	21135500	21135600	393216	0	-	0.24	[0,0.28]	chr1	46836	225	INTRON	INTRON	EIF4G3	ENSG00000075151.24	ENST00000374935.7:ENST00000602326.6:ENST00000685872.1:ENST00000686579.1:ENST00000688741.1:ENST00000400422.6:ENST00000634879.2:ENST00000693470.1:ENST00000685814.1:ENST00000356916.7:ENST00000682284.1:ENST00000438975.5:ENST00000411888.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	107	2	3.55112	4.81132	6.07152	0.00205086	8.28707e-5	0.0409264	0.00766104
chr1	19365655	19365755	387702	0	-	0.51	(0.476,0.515]	chr1	46359	77	INTRON	INTRON	CAPZB	ENSG00000077549.19	ENST00000264202.8:ENST00000264203.7:ENST00000375142.5:ENST00000482808.2:ENST00000674449.1:ENST00000674390.1:ENST00000375144.6:ENST00000674432.1:ENST00000433834.5:ENST00000674228.1:ENST00000459967.6:ENST00000457768.6:ENST00000489607.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	38	2	4.76827	4.811030000000001	4.85379	0.00600704	0.00234214	0.0674604	0.0442989
chr19	2729922	2730021	7116345	0	-	0.515152	(0.476,0.515]	chr19	715421	7	INTRON	INTRON	ENSG00000267001	ENSG00000267001.1	ENST00000586572.1	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.76827	4.811030000000001	4.85379	0.00600704	0.00234214	0.0674604	0.0442989
chr5	71470589	71470689	2383727	0	+	0.49	(0.476,0.515]	chr5	229886	1	SS5_PROX	SS5_PROX:INTRON	BDP1	ENSG00000145734.20	ENST00000358731.9:ENST00000508917.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	38	2	4.76827	4.811030000000001	4.85379	0.00600704	0.00234214	0.0674604	0.0442989
chr22	20986967	20987064	7480936	0	+	0.340206	(0.32,0.35]	chr22	763117	12	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	LZTR1	ENSG00000099949.21	ENST00000414985.5:ENST00000646124.2:ENST00000493460.2:ENST00000443265.5:ENST00000645935.1:ENST00000644435.1:ENST00000642151.1:ENST00000480895.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	115	2	3.48305	4.810315	6.13758	8.91094e-5	8.35107e-5	0.00815123	0.00793468
chr1	35840068	35840167	70315	0	+	0.525253	(0.515,0.57]	chr1	8994	37	INTRON	INTRON	AGO4	ENSG00000134698.11	ENST00000373210.4	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.399	4.810205	5.22141	0.00708863	6.44141e-4	0.0754923	0.0231685
chr17	4203735	4203834	6710764	0	-	0.545455	(0.515,0.57]	chr17	657639	58	INTRON	INTRON	ANKFY1	ENSG00000185722.18	ENST00000341657.9:ENST00000648043.1:ENST00000570535.5:ENST00000574367.5:ENST00000572412.5:ENST00000570934.5:ENST00000573250.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	38	2	4.399	4.810205	5.22141	0.00708863	6.44141e-4	0.0754923	0.0231685
chr7	72831101	72831171	3329720	0	+	0.414286	(0.408,0.44]	chr7	309535	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SBDSP1	ENSG00000225648.6	ENST00000423945.5:ENST00000685034.1:ENST00000453858.2:ENST00000691023.1:ENST00000415772.5:ENST00000456312.5:ENST00000437201.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	2	175	2	4.72506	4.81015	4.89524	8.36161e-7	7.99231e-7	5.45905e-4	5.18092e-4
chr7	100706396	100706496	3365291	0	+	0.5	(0.476,0.515]	chr7	314901	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	POP7	ENSG00000172336.5	ENST00000303151.5:ENST00000457480.1	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	4.526	4.810115	5.09423	0.00699701	0.00204588	0.0754576	0.04086
chr2	169596011	169596110	906587	0	+	0.606061	(0.57,1]	chr2	100021	29	INTRON	INTRON	PPIG	ENSG00000138398.17	ENST00000678088.1:ENST00000677392.1:ENST00000433207.6:ENST00000679324.1:ENST00000414307.6:ENST00000676508.1:ENST00000260970.8:ENST00000678695.1:ENST00000409714.7:ENST00000530152.5:ENST00000677750.1:ENST00000676557.1:ENST00000678721.1:ENST00000462903.6:ENST00000676756.1:ENST00000679107.1:ENST00000678499.1:ENST00000678638.1:ENST00000448752.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	30	2	4.49107	4.8096	5.12813	0.00220544	8.62401e-5	0.0417893	0.00783027
chr17	7686623	7686707	6719548	0	-	0.464286	(0.44,0.476]	chr17	659196	4	INTRON	INTRON	TP53	ENSG00000141510.18	ENST00000635293.1:ENST00000620739.4:ENST00000610292.4:ENST00000420246.6:ENST00000455263.6:ENST00000610538.4:ENST00000622645.4:ENST00000269305.9:ENST00000445888.6:ENST00000619485.4:ENST00000509690.5:ENST00000514944.5:ENST00000505014.5:ENST00000604348.5:ENST00000503591.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	38	2	4.76068	4.809425	4.85817	0.00653414	0.00223254	0.0699952	0.0435144
chr18	13101012	13101111	6877716	0	+	0.474747	(0.44,0.476]	chr18	681548	1	INTRON	INTRON	CEP192	ENSG00000101639.19	ENST00000325971.12:ENST00000506447.5:ENST00000513432.5:ENST00000511820.6:ENST00000510237.5:ENST00000589993.5:ENST00000540847.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	38	2	4.76068	4.809425	4.85817	0.00653414	0.00223254	0.0699952	0.0435144
chr2	99473162	99473262	1189713	0	-	0.47	(0.44,0.476]	chr2	127721	78	INTRON	INTRON	REV1	ENSG00000135945.10	ENST00000393445.7:ENST00000258428.8:ENST00000413697.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	38	2	4.76068	4.809425	4.85817	0.00653414	0.00223254	0.0699952	0.0435144
chr6	170366809	170366909	3036966	0	+	0.47	(0.44,0.476]	chr6	283078	81	INTRON	INTRON	FAM120B	ENSG00000112584.14	ENST00000630384.2:ENST00000537664.5:ENST00000476287.4:ENST00000625626.1	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.76068	4.809425	4.85817	0.00653414	0.00223254	0.0699952	0.0435144
chr7	101863343	101863443	3366822	0	+	0.45	(0.44,0.476]	chr7	315215	440	INTRON	INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000497815.5:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000607092.1:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000558469.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	38	2	4.76068	4.809425	4.85817	0.00653414	0.00223254	0.0699952	0.0435144
chr1	161128518	161128617	573920	0	-	0.525253	(0.515,0.57]	chr1	69614	36	INTRON	INTRON	DEDD	ENSG00000158796.17	ENST00000368006.8:ENST00000472996.1:ENST00000545495.5:ENST00000458050.6:ENST00000489249.5:ENST00000490843.6:ENST00000486041.5:ENST00000368005.5:ENST00000464113.1:ENST00000473679.6:ENST00000463227.5:ENST00000496632.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	39	2	4.28921	4.8093900000000005	5.32957	0.00990051	4.06834e-4	0.0877296	0.0185763
chr11	33026717	33026810	4765849	0	+	0.44086	(0.44,0.476]	chr11	440710	1	INTRON	INTRON	DEPDC7	ENSG00000121690.11	ENST00000241051.8:ENST00000532078.1:ENST00000311388.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	39	2	4.43377	4.80929	5.18481	0.0162803	6.21872e-4	0.101453	0.0223951
chr11	46558345	46558445	4946903	0	-	0.48	(0.476,0.515]	chr11	463525	89	INTRON	INTRON	AMBRA1	ENSG00000110497.15	ENST00000683756.1:ENST00000534300.5:ENST00000533727.5:ENST00000314845.7:ENST00000458649.6:ENST00000528950.1:ENST00000531542.1:ENST00000526606.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	38	2	4.6932	4.809245000000001	4.92529	0.00753088	0.00180221	0.074841	0.0392772
chr3	51491134	51491234	1697192	0	-	0.48	(0.476,0.515]	chr3	174424	69	INTRON	INTRON	DCAF1	ENSG00000145041.16	ENST00000504652.5:ENST00000423656.5:ENST00000684031.1	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.6932	4.809245000000001	4.92529	0.00753088	0.00180221	0.074841	0.0392772
chr8	47280317	47280417	3747414	0	+	0.48	(0.476,0.515]	chr8	348774	3	SS5_PROX	SS5_PROX:INTRON	SPIDR	ENSG00000164808.17	ENST00000541342.2:ENST00000523814.5:ENST00000518074.5:ENST00000522900.5:ENST00000297423.9:ENST00000521550.5:ENST00000517824.5:ENST00000524126.5:ENST00000524141.5:ENST00000519661.5:ENST00000522222.5:ENST00000522117.5:ENST00000524033.5:ENST00000524006.5:ENST00000521214.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	38	2	4.6932	4.809245000000001	4.92529	0.00753088	0.00180221	0.074841	0.0392772
chr1	16317331	16317431	382268	0	-	0.51	(0.476,0.515]	chr1	44888	15	INTRON	INTRON	FBXO42	ENSG00000037637.11	ENST00000375592.8	protein_coding	protein_coding	protein_coding	protein_coding	8	210	2	2.96759	4.809175	6.65076	5.38218e-6	1.17844e-6	0.00160484	6.90126e-4
chr12	104483313	104483413	5210947	0	+	0.49	(0.476,0.515]	chr12	493315	254	INTRON	INTRON	CHST11	ENSG00000171310.11	ENST00000303694.6:ENST00000547956.1:ENST00000549260.5:ENST00000546689.1	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.77856	4.809089999999999	4.83962	0.00480934	0.00305743	0.0602209	0.0509893
chr12	122122456	122122555	5240299	0	+	0.50505	(0.476,0.515]	chr12	497496	428	INTRON	INTRON	MLXIP	ENSG00000175727.14	ENST00000319080.12	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.77856	4.809089999999999	4.83962	0.00480934	0.00305743	0.0602209	0.0509893
chr14	37071988	37072088	5877007	0	-	0.5	(0.476,0.515]	chr14	558013	1966	INTRON	INTRON	SLC25A21	ENSG00000183032.12	ENST00000331299.6:ENST00000555449.5:ENST00000557611.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	38	2	4.77856	4.809089999999999	4.83962	0.00480934	0.00305743	0.0602209	0.0509893
chr17	2509870	2509969	6706203	0	-	0.50505	(0.476,0.515]	chr17	656607	72	INTRON	INTRON	METTL16	ENSG00000127804.13	ENST00000263092.11:ENST00000571669.6:ENST00000576556.5:ENST00000574752.5:ENST00000576976.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	38	2	4.77856	4.809089999999999	4.83962	0.00480934	0.00305743	0.0602209	0.0509893
chr8	42541646	42541711	3942588	0	-	0.753846	(0.57,1]	chr8	361346	2	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	SLC20A2	ENSG00000168575.10	ENST00000342228.7:ENST00000524237.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	30	2	4.56365	4.80907	5.05449	0.00129848	1.79828e-4	0.0333764	0.0121697
chr15	32521189	32521284	6127849	0	-	0.326316	(0.32,0.35]	chr15	583701	6	INTRON	INTRON	WHAMMP1	ENSG00000223509.8	ENST00000604301.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	0	40	2	4.61889	4.809055000000001	4.99922	0.0166646	0.00223907	0.102621	0.0435144
chr5	38997579	38997678	2604876	0	-	0.343434	(0.32,0.35]	chr5	247878	3	INTRON	INTRON	RICTOR	ENSG00000164327.13	ENST00000357387.8:ENST00000511516.5:ENST00000296782.9:ENST00000510711.5:ENST00000513566.1:ENST00000514735.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	40	2	4.61889	4.809055000000001	4.99922	0.0166646	0.00223907	0.102621	0.0435144
chr6	147947719	147947819	2993477	0	+	0.35	(0.32,0.35]	chr6	280182	2	SS5_PROX	SS5_PROX:INTRON	ENSG00000227681	ENSG00000227681.5	ENST00000427015.1	lncRNA	lncRNA	lncRNA	lncRNA	0	40	2	4.61889	4.809055000000001	4.99922	0.0166646	0.00223907	0.102621	0.0435144
chr8	28976587	28976686	3725722	0	+	0.323232	(0.32,0.35]	chr8	346270	57	INTRON	INTRON	HMBOX1	ENSG00000147421.18	ENST00000287701.15:ENST00000558662.5:ENST00000397358.7:ENST00000560599.5:ENST00000523613.5:ENST00000521516.5:ENST00000519047.5:ENST00000355231.9:ENST00000524238.3:ENST00000518080.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	40	2	4.61889	4.809055000000001	4.99922	0.0166646	0.00223907	0.102621	0.0435144
chr5	97184116	97184216	2436814	0	+	0.49	(0.476,0.515]	chr5	234106	2	SS5_PROX	SS5_PROX:INTRON	LIX1-AS1:ENSG00000286828	ENSG00000251513.2:ENSG00000286828.1	ENST00000504578.2:ENST00000654632.1	lncRNA	lncRNA	lncRNA	lncRNA	1	86	2	4.03257	4.80901	5.58545	1.04881e-4	9.96835e-5	0.00903184	0.00863456
chr1	77674087	77674186	493378	0	-	0.333333	(0.32,0.35]	chr1	58315	321	INTRON	INTRON	ZZZ3	ENSG00000036549.13	ENST00000370801.8:ENST00000370798.5:ENST00000433749.5:ENST00000414381.5:ENST00000463166.5:ENST00000469944.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	40	2	4.7197	4.80869	4.89768	0.00793135	0.00568521	0.076155	0.0678837
chr5	178218879	178218978	2778615	0	-	0.343434	(0.32,0.35]	chr5	262050	15	INTRON	INTRON	PHYKPL	ENSG00000175309.15	ENST00000308158.10:ENST00000481436.5:ENST00000489262.5:ENST00000481811.5:ENST00000474052.5:ENST00000393488.2:ENST00000493197.5:ENST00000494126.6:ENST00000510991.5:ENST00000476487.5:ENST00000506045.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	40	2	4.7197	4.80869	4.89768	0.00793135	0.00568521	0.076155	0.0678837
chr11	57306226	57306324	4952700	0	-	0.469388	(0.44,0.476]	chr11	464753	29	INTRON	INTRON	TNKS1BP1	ENSG00000149115.14	ENST00000528882.5:ENST00000358252.8:ENST00000532437.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	85	2	3.89895	4.80778	5.71661	2.02261e-4	5.13947e-5	0.0129814	0.00585477
chr21	46640064	46640163	7423718	0	+	0.292929	(0.28,0.32]	chr21	757179	27	INTRON	INTRON	PRMT2	ENSG00000160310.19	ENST00000451211.6:ENST00000458387.6:ENST00000397638.6:ENST00000291705.11:ENST00000397637.5:ENST00000334494.8:ENST00000355680.8:ENST00000397628.5:ENST00000440086.5	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	4.58875	4.807705	5.02666	0.0230574	0.0027935	0.118056	0.0488769
chr5	19120265	19120365	2570268	0	-	0.31	(0.28,0.32]	chr5	246210	816	INTRON	INTRON	ENSG00000249174	ENSG00000249174.1	ENST00000504827.1	lncRNA	lncRNA	lncRNA	lncRNA	0	41	2	4.58875	4.807705	5.02666	0.0230574	0.0027935	0.118056	0.0488769
chr1	180102064	180102163	268958	0	+	0.444444	(0.44,0.476]	chr1	31532	27	INTRON	INTRON	CEP350	ENSG00000135837.16	ENST00000367607.8:ENST00000429851.5:ENST00000490141.5:ENST00000417046.1:ENST00000496440.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	38	2	4.68564	4.80766	4.92968	0.00816201	0.00171443	0.0766625	0.0381936
chr8	22486712	22486812	3713777	0	+	0.46	(0.44,0.476]	chr8	344885	107	INTRON	INTRON	PPP3CC	ENSG00000120910.15	ENST00000518852.5:ENST00000240139.10:ENST00000289963.12:ENST00000397775.7:ENST00000522034.5	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.68564	4.80766	4.92968	0.00816201	0.00171443	0.0766625	0.0381936
chr2	167921933	167922033	1259022	0	-	0.17	[0,0.28]	chr2	133340	208	INTRON	INTRON	B3GALT1-AS1	ENSG00000235335.3	ENST00000430546.2:ENST00000657553.1:ENST00000670221.1:ENST00000436982.2	lncRNA	lncRNA	lncRNA	lncRNA	0	43	2	4.46726	4.807515	5.14777	0.0427997	0.00311898	0.148082	0.0512673
chr1	24802833	24802933	46639	0	+	0.46	(0.44,0.476]	chr1	5776	46	INTRON	INTRON	CLIC4	ENSG00000169504.15	ENST00000488683.1:ENST00000497755.1:ENST00000374379.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	38	2	4.78293	4.807475	4.83202	0.00525002	0.00292033	0.0633615	0.0494641
chr20	49289904	49289999	7284721	0	+	0.452632	(0.44,0.476]	chr20	741068	10	EXON_LNCRNA	EXON_LNCRNA:INTRON	ZFAS1	ENSG00000177410.13	ENST00000371743.8:ENST00000620594.2:ENST00000652916.1	lncRNA	lncRNA	lncRNA	lncRNA	0	38	2	4.78293	4.807475	4.83202	0.00525002	0.00292033	0.0633615	0.0494641
chr22	31425539	31425634	7503274	0	+	0.473684	(0.44,0.476]	chr22	765625	18	INTRON	INTRON	DRG1	ENSG00000185721.13	ENST00000331457.9	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.78293	4.807475	4.83202	0.00525002	0.00292033	0.0633615	0.0494641
chr4	902243	902343	2093985	0	-	0.47	(0.44,0.476]	chr4	206956	37	INTRON	INTRON	GAK	ENSG00000178950.18	ENST00000314167.9:ENST00000511163.5:ENST00000505819.5:ENST00000507580.5:ENST00000502656.5:ENST00000507991.1:ENST00000512325.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	38	2	4.78293	4.807475	4.83202	0.00525002	0.00292033	0.0633615	0.0494641
chr11	108205220	108205320	5035012	0	-	0.37	(0.35,0.378]	chr11	474461	74	INTRON	INTRON	NPAT	ENSG00000149308.17	ENST00000278612.9:ENST00000610253.5:ENST00000531384.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	39	2	4.71953	4.80738	4.89523	0.0103314	0.00253947	0.0850389	0.0465056
chr19	12632346	12632446	7021867	0	+	0.37	(0.35,0.378]	chr19	698093	32	UTR3	UTR3:EXON_MRNA	ZNF791	ENSG00000173875.14	ENST00000446165.2:ENST00000343325.9	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	4.71953	4.80738	4.89523	0.0103314	0.00253947	0.0850389	0.0465056
chr19	52079949	52080047	7205708	0	-	0.367347	(0.35,0.378]	chr19	731297	25	INTRON	INTRON	ZNF432:ZNF841	ENSG00000256087.7:ENSG00000197608.12	ENST00000598446.1:ENST00000594440.6:ENST00000426391.6:ENST00000594295.5:ENST00000389534.8:ENST00000599430.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	39	2	4.71953	4.80738	4.89523	0.0103314	0.00253947	0.0850389	0.0465056
chr21	46638579	46638678	7423703	0	+	0.363636	(0.35,0.378]	chr21	757179	12	INTRON	INTRON	PRMT2	ENSG00000160310.19	ENST00000451211.6:ENST00000458387.6:ENST00000397638.6:ENST00000291705.11:ENST00000397637.5:ENST00000334494.8:ENST00000355680.8:ENST00000397628.5:ENST00000440086.5	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	4.71953	4.80738	4.89523	0.0103314	0.00253947	0.0850389	0.0465056
chr5	70244187	70244287	2638228	0	-	0.36	(0.35,0.378]	chr5	250619	180	INTRON	INTRON	GUSBP14	ENSG00000253816.3	ENST00000514522.2	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	0	39	2	4.71953	4.80738	4.89523	0.0103314	0.00253947	0.0850389	0.0465056
chr8	143458917	143459017	4082213	0	-	0.37	(0.35,0.378]	chr8	370865	174	INTRON	INTRON	ZC3H3	ENSG00000014164.7	ENST00000262577.6	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	4.71953	4.80738	4.89523	0.0103314	0.00253947	0.0850389	0.0465056
chr12	77022037	77022136	5372395	0	-	0.353535	(0.35,0.378]	chr12	512513	9	UTR3	UTR3:EXON_MRNA	E2F7	ENSG00000165891.16	ENST00000416496.6:ENST00000322886.12	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	4.79079	4.80728	4.82377	0.00846427	0.00325499	0.0776969	0.0524329
chr12	89455339	89455439	5379999	0	-	0.36	(0.35,0.378]	chr12	513232	260	INTRON	INTRON	POC1B	ENSG00000139323.14	ENST00000313546.8:ENST00000393179.8:ENST00000546740.5:ENST00000549035.1:ENST00000547496.5:ENST00000548715.5:ENST00000549504.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	39	2	4.79079	4.80728	4.82377	0.00846427	0.00325499	0.0776969	0.0524329
chr3	33705522	33705622	1653884	0	-	0.29	(0.28,0.32]	chr3	169693	82	INTRON	INTRON	CLASP2	ENSG00000163539.18	ENST00000399362.8:ENST00000682230.1:ENST00000468888.6:ENST00000359576.9:ENST00000467956.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	41	2	4.68527	4.80728	4.92929	0.0098607	0.00819419	0.0838128	0.0810802
chr4	2705280	2705378	1914229	0	+	0.367347	(0.35,0.378]	chr4	192092	44	INTRON	INTRON	FAM193A	ENSG00000125386.16	ENST00000637812.2:ENST00000324666.9:ENST00000382839.7:ENST00000512465.5:ENST00000545951.5:ENST00000502458.5:ENST00000513898.5:ENST00000505311.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	39	2	4.79079	4.80728	4.82377	0.00846427	0.00325499	0.0776969	0.0524329
chr6	111427953	111428053	3191807	0	-	0.37	(0.35,0.378]	chr6	297346	111	INTRON	INTRON	REV3L	ENSG00000009413.16	ENST00000422377.5:ENST00000434009.5:ENST00000368802.8:ENST00000435970.5:ENST00000358835.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	39	2	4.79079	4.80728	4.82377	0.00846427	0.00325499	0.0776969	0.0524329
chr7	99117647	99117747	3582879	0	-	0.29	(0.28,0.32]	chr7	333700	364	INTRON	INTRON	SMURF1	ENSG00000198742.10	ENST00000361368.7:ENST00000361125.1:ENST00000472627.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	41	2	4.68527	4.80728	4.92929	0.0098607	0.00819419	0.0838128	0.0810802
chrX	11373278	11373378	7761087	0	-	0.31	(0.28,0.32]	chrX	793522	375	INTRON	INTRON	ARHGAP6	ENSG00000047648.23	ENST00000380736.5:ENST00000337414.9:ENST00000495242.5:ENST00000489330.6:ENST00000380718.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	41	2	4.68527	4.80728	4.92929	0.0098607	0.00819419	0.0838128	0.0810802
chr21	39261166	39261266	7465002	0	-	0.38	(0.378,0.408]	chr21	760495	21	INTRON	INTRON	BRWD1	ENSG00000185658.14	ENST00000333229.6:ENST00000342449.8:ENST00000446924.5:ENST00000380800.7:ENST00000430093.5:ENST00000445245.5:ENST00000445668.5:ENST00000412604.1:ENST00000455867.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	39	2	4.50056	4.8068550000000005	5.11315	0.015974	9.26795e-4	0.101453	0.0278442
chr10	87280171	87280271	4660758	0	-	0.27	[0,0.28]	chr10	429440	336	INTRON	INTRON	NUTM2A-AS1	ENSG00000223482.9	ENST00000692417.1:ENST00000688214.1:ENST00000659257.1:ENST00000671543.1:ENST00000451940.6:ENST00000687947.1:ENST00000663644.1:ENST00000684884.1:ENST00000664664.1:ENST00000446751.6:ENST00000456104.5:ENST00000433530.7:ENST00000688257.1:ENST00000433920.5:ENST00000687925.1:ENST00000666515.2:ENST00000688926.1:ENST00000447424.6:ENST00000690598.1:ENST00000663113.1:ENST00000667520.2:ENST00000693252.1:ENST00000687827.1:ENST00000687141.1	lncRNA	lncRNA	lncRNA	lncRNA	0	43	2	4.55618	4.80683	5.05748	0.0171034	0.0113653	0.110899	0.0886611
chr2	26227106	26227205	1085926	0	-	0.262626	[0,0.28]	chr2	116048	116	INTRON	INTRON	HADHA	ENSG00000084754.12	ENST00000380649.8:ENST00000644428.1:ENST00000492433.2:ENST00000643057.1:ENST00000645274.1:ENST00000643233.1:ENST00000643063.1:ENST00000646483.1:ENST00000471743.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	43	2	4.55618	4.80683	5.05748	0.0171034	0.0113653	0.110899	0.0886611
chr6	87175258	87175358	2913455	0	+	0.3	(0.28,0.32]	chr6	275281	50	INTRON	INTRON	ZNF292	ENSG00000188994.13	ENST00000369577.8:ENST00000369578.6:ENST00000518845.1:ENST00000339907.8:ENST00000496806.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	98	2	3.57808	4.806495	6.03491	0.00141407	4.10265e-5	0.0340865	0.00519615
chr3	33591116	33591215	1652707	0	-	0.424242	(0.408,0.44]	chr3	169551	20	INTRON	INTRON	CLASP2	ENSG00000163539.18	ENST00000399362.8:ENST00000682230.1:ENST00000468888.6:ENST00000359576.9:ENST00000650653.1:ENST00000480013.6:ENST00000461133.8:ENST00000635664.1	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.75398	4.80635	4.85872	0.00703931	0.00221911	0.0718189	0.0435144
chr5	901531	901631	2314038	0	+	0.42	(0.408,0.44]	chr5	223964	1	SS5_PROX	SS5_PROX:INTRON	TRIP13	ENSG00000071539.14	ENST00000166345.8:ENST00000512024.5:ENST00000513435.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	38	2	4.75398	4.80635	4.85872	0.00703931	0.00221911	0.0718189	0.0435144
chr6	34889999	34890099	2849279	0	+	0.44	(0.408,0.44]	chr6	269221	4	SS5_PROX	SS5_PROX:INTRON	ANKS1A	ENSG00000064999.15	ENST00000360359.5:ENST00000649117.1:ENST00000650178.1	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.75398	4.80635	4.85872	0.00703931	0.00221911	0.0718189	0.0435144
chr11	36489538	36489638	4942962	0	-	0.43	(0.408,0.44]	chr11	463152	59	UTR3	UTR3:EXON_MRNA	TRAF6	ENSG00000175104.15	ENST00000526995.6:ENST00000348124.5	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	4.42713	4.8062450000000005	5.18536	0.0173083	6.17381e-4	0.104099	0.0223951
chr11	95799688	95799788	4853624	0	+	0.41	(0.408,0.44]	chr11	452697	3	SS5_PROX	SS5_PROX:INTRON	CEP57	ENSG00000166037.11	ENST00000537677.5:ENST00000325486.9:ENST00000325542.10:ENST00000538095.1:ENST00000544522.5:ENST00000539855.5:ENST00000541365.5:ENST00000535497.1:ENST00000540830.5:ENST00000538658.5:ENST00000541150.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	39	2	4.42713	4.8062450000000005	5.18536	0.0173083	6.17381e-4	0.104099	0.0223951
chr15	41052843	41052940	6152584	0	-	0.42268	(0.408,0.44]	chr15	585325	24	INTRON	INTRON	INO80	ENSG00000128908.18	ENST00000648947.1:ENST00000401393.7:ENST00000558357.6:ENST00000559995.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	39	2	4.42713	4.8062450000000005	5.18536	0.0173083	6.17381e-4	0.104099	0.0223951
chr15	55261715	55261814	6180622	0	-	0.424242	(0.408,0.44]	chr15	589160	13	INTRON	INTRON	RAB27A	ENSG00000069974.16	ENST00000336787.6:ENST00000396307.6:ENST00000564609.5:ENST00000569493.5:ENST00000567380.5:ENST00000565972.5:ENST00000563262.5:ENST00000568803.1:ENST00000567639.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	39	2	4.42713	4.8062450000000005	5.18536	0.0173083	6.17381e-4	0.104099	0.0223951
chr1	174990996	174991096	265480	0	+	0.38	(0.378,0.408]	chr1	30971	11	UTR3	UTR3:EXON_MRNA:INTRON	RABGAP1L	ENSG00000152061.24	ENST00000681986.1:ENST00000489615.5:ENST00000392064.6:ENST00000485114.1	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	4.60771	4.806150000000001	5.00459	0.00567576	0.00371142	0.0678837	0.0535094
chr8	47815858	47815957	3944237	0	-	0.363636	(0.35,0.378]	chr8	361605	82	INTRON	INTRON	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	4.40128	4.8057300000000005	5.21018	0.0120289	0.00228003	0.0962115	0.0426265
chr17	70125568	70125668	6828704	0	-	0.45	(0.44,0.476]	chr17	675009	524	INTRON	INTRON	ENSG00000230258	ENSG00000230258.6	ENST00000435112.5	lncRNA	lncRNA	lncRNA	lncRNA	4	144	2	3.18051	4.805035	6.42956	2.04793e-5	5.02337e-6	0.00351769	0.00165971
chr4	2241708	2241802	2098048	0	-	0.606383	(0.57,1]	chr4	207592	3	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HAUS3	ENSG00000214367.9	ENST00000672739.1:ENST00000672725.1:ENST00000506763.5:ENST00000243706.8:ENST00000443786.3:ENST00000514395.1:ENST00000502440.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	70	2	3.35736	4.80461	6.25186	8.14057e-5	7.04531e-8	0.00755207	1.11989e-4
chr15	41345285	41345385	6004896	0	+	0.41	(0.408,0.44]	chr15	571297	4	SS3_PROX	SS3_PROX:INTRON	NUSAP1	ENSG00000137804.14	ENST00000668273.1:ENST00000260359.10:ENST00000558123.5:ENST00000559046.5:ENST00000414849.6:ENST00000450592.6:ENST00000559596.6:ENST00000558582.5:ENST00000560747.5:ENST00000559659.1:ENST00000560177.5:ENST00000557840.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	38	2	4.67894	4.80459	4.93024	0.0087648	0.00170369	0.0788605	0.0381936
chr15	75905757	75905857	6065677	0	+	0.41	(0.408,0.44]	chr15	577630	1	SS5_PROX	SS5_PROX:INTRON	FBXO22	ENSG00000167196.14	ENST00000569749.5:ENST00000308275.8:ENST00000569022.1:ENST00000453211.6:ENST00000565131.5:ENST00000565036.5:ENST00000569054.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	38	2	4.67894	4.80459	4.93024	0.0087648	0.00170369	0.0788605	0.0381936
chr16	70263597	70263692	6510220	0	-	0.410526	(0.408,0.44]	chr16	630546	7	INTRON	INTRON	AARS1	ENSG00000090861.17	ENST00000674963.1:ENST00000675643.1:ENST00000675917.1:ENST00000674691.1:ENST00000261772.13:ENST00000675569.1:ENST00000676209.1:ENST00000676211.1:ENST00000676040.1:ENST00000675953.1:ENST00000675691.1:ENST00000676004.1:ENST00000675270.1:ENST00000675403.1:ENST00000676212.1:ENST00000675045.1:ENST00000675035.1:ENST00000676168.1:ENST00000674652.1:ENST00000675133.1:ENST00000675120.1:ENST00000674811.1:ENST00000674512.1:ENST00000675853.1:ENST00000565361.3:ENST00000676247.1:ENST00000674848.1:ENST00000674962.1:ENST00000675371.1:ENST00000675986.1:ENST00000674768.1:ENST00000675297.1:ENST00000675751.1:ENST00000564359.6:ENST00000569790.2:ENST00000566969.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	38	2	4.67894	4.80459	4.93024	0.0087648	0.00170369	0.0788605	0.0381936
chr22	38497584	38497684	7588002	0	-	0.41	(0.408,0.44]	chr22	776750	1	SS5_PROX	SS5_PROX:INTRON	DDX17	ENSG00000100201.23	ENST00000403230.3:ENST00000396821.8:ENST00000216019.11:ENST00000432525.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	38	2	4.67894	4.80459	4.93024	0.0087648	0.00170369	0.0788605	0.0381936
chr1	235119999	235120099	661747	0	-	0.26	[0,0.28]	chr1	78331	1	SS3_PROX	SS3_PROX:INTRON	TOMM20	ENSG00000173726.11	ENST00000366607.5:ENST00000473132.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	42	2	4.75964	4.804475	4.84931	0.0232081	0.00779241	0.118148	0.0787356
chr19	21168828	21168923	7040228	0	+	0.2	[0,0.28]	chr19	701943	8	INTRON	INTRON	ZNF431	ENSG00000196705.8	ENST00000600692.5:ENST00000599296.5:ENST00000594425.5:ENST00000311048.11:ENST00000598331.1	protein_coding	protein_coding	protein_coding	protein_coding	0	42	2	4.75964	4.804475	4.84931	0.0232081	0.00779241	0.118148	0.0787356
chr7	111356577	111356677	3622048	0	-	0.28	[0,0.28]	chr7	337093	3927	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	42	2	4.75964	4.804475	4.84931	0.0232081	0.00779241	0.118148	0.0787356
chr9	131188852	131188952	4216279	0	+	0.25	[0,0.28]	chr9	386636	4	SS3_PROX	SS3_PROX:INTRON	NUP214	ENSG00000126883.19	ENST00000695497.1:ENST00000695498.1:ENST00000695496.1:ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000525980.5:ENST00000526346.5:ENST00000531929.5:ENST00000651334.1:ENST00000524578.6:ENST00000453861.6:ENST00000470765.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	42	2	4.75964	4.804475	4.84931	0.0232081	0.00779241	0.118148	0.0787356
chr16	4838107	4838207	6438929	0	-	0.42	(0.408,0.44]	chr16	620202	48	INTRON	INTRON	GLYR1	ENSG00000140632.17	ENST00000321919.14:ENST00000436648.9:ENST00000588732.5:ENST00000589389.5:ENST00000591451.5:ENST00000588297.5:ENST00000587875.1:ENST00000591159.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	38	2	4.78348	4.80439	4.8253	0.0056738	0.00290352	0.0653997	0.0494641
chr3	6608541	6608641	1357329	0	+	0.44	(0.408,0.44]	chr3	142522	241	INTRON	INTRON	ENSG00000189229	ENSG00000189229.12	ENST00000433639.1:ENST00000655754.1:ENST00000658468.1:ENST00000669512.1:ENST00000667028.1:ENST00000655541.1:ENST00000668643.1:ENST00000671568.1:ENST00000671036.1:ENST00000669798.1:ENST00000655753.1:ENST00000655856.1:ENST00000658398.1:ENST00000661518.1:ENST00000661279.1:ENST00000655495.1:ENST00000663041.1:ENST00000659827.1:ENST00000667716.1:ENST00000668416.1:ENST00000658133.1:ENST00000342990.4:ENST00000660054.1:ENST00000671370.1	lncRNA	lncRNA	lncRNA	lncRNA	0	38	2	4.78348	4.80439	4.8253	0.0056738	0.00290352	0.0653997	0.0494641
chr7	36401292	36401392	3307114	0	+	0.44	(0.408,0.44]	chr7	307087	15	INTRON	INTRON	ANLN	ENSG00000011426.11	ENST00000396068.6:ENST00000265748.7:ENST00000424865.1	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.78348	4.80439	4.8253	0.0056738	0.00290352	0.0653997	0.0494641
chr7	92720044	92720144	3572093	0	-	0.41	(0.408,0.44]	chr7	332798	184	INTRON	INTRON	CDK6	ENSG00000105810.10	ENST00000424848.3:ENST00000265734.8:ENST00000473078.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	38	2	4.78348	4.80439	4.8253	0.0056738	0.00290352	0.0653997	0.0494641
chr12	122516026	122516126	5442139	0	-	0.25	[0,0.28]	chr12	520568	4	INTRON	INTRON	RSRC2	ENSG00000111011.18	ENST00000331738.12:ENST00000532695.5:ENST00000433877.6:ENST00000527173.6:ENST00000525335.6:ENST00000344591.8:ENST00000528263.1:ENST00000527399.3:ENST00000524399.1:ENST00000527796.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	134	2	3.59993	4.804	6.00807	6.0063e-4	8.2971e-5	0.0226059	0.00766582
chr3	47829634	47829726	1420244	0	+	0.358696	(0.35,0.378]	chr3	149234	1	INTRON	INTRON	DHX30	ENSG00000132153.15	ENST00000395745.6:ENST00000445061.6:ENST00000441384.5:ENST00000348968.8:ENST00000446256.6:ENST00000619982.4:ENST00000457607.1:ENST00000470959.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	39	2	4.64457	4.803935	4.9633	0.012652	0.00198929	0.0926667	0.0411469
chr7	129621399	129621499	3412218	0	+	0.36	(0.35,0.378]	chr7	319009	92	INTRON	INTRON	NRF1	ENSG00000106459.15	ENST00000393232.6:ENST00000477428.5:ENST00000454688.5:ENST00000223190.8:ENST00000311967.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	39	2	4.64457	4.803935	4.9633	0.012652	0.00198929	0.0926667	0.0411469
chr15	90101676	90101775	6258252	0	-	0.545455	(0.515,0.57]	chr15	597198	11	INTRON	INTRON	IDH2	ENSG00000182054.10	ENST00000330062.8:ENST00000560061.1:ENST00000559482.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	36	2	4.6831	4.803915	4.92473	0.00471288	0.00108255	0.0600108	0.0300133
chr5	146150780	146150876	2747079	0	-	0.53125	(0.515,0.57]	chr5	258830	7	INTRON	INTRON	LARS1	ENSG00000133706.19	ENST00000674174.1:ENST00000674170.1:ENST00000674479.1:ENST00000674309.1:ENST00000674218.1:ENST00000674467.1:ENST00000674290.1:ENST00000674447.1:ENST00000674270.1:ENST00000674383.1:ENST00000674191.1:ENST00000674158.1:ENST00000394434.7:ENST00000674398.1:ENST00000674277.1:ENST00000274562.13:ENST00000510191.5:ENST00000674310.1:ENST00000512412.2:ENST00000508667.5:ENST00000507095.1:ENST00000674417.1:ENST00000674450.1:ENST00000674412.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	36	2	4.6831	4.803915	4.92473	0.00471288	0.00108255	0.0600108	0.0300133
chrX	139823114	139823214	7904803	0	-	0.54	(0.515,0.57]	chrX	804446	33	INTRON	INTRON	ATP11C	ENSG00000101974.15	ENST00000370557.5:ENST00000682941.1:ENST00000327569.7:ENST00000361648.6:ENST00000485626.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	36	2	4.6831	4.803915	4.92473	0.00471288	0.00108255	0.0600108	0.0300133
chr11	47531259	47531359	4950184	0	-	0.53	(0.515,0.57]	chr11	464246	66	INTRON	INTRON	CELF1	ENSG00000149187.19	ENST00000310513.10:ENST00000687097.1:ENST00000531165.5:ENST00000530151.5:ENST00000525841.5:ENST00000526419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.76984	4.80374	4.83764	0.00279527	0.00198034	0.0469265	0.0411469
chr19	40755247	40755346	7070128	0	+	0.373737	(0.35,0.378]	chr19	706486	34	INTRON	INTRON	SNRPA	ENSG00000077312.9	ENST00000601545.5:ENST00000601253.5:ENST00000597353.5:ENST00000599362.5:ENST00000599570.5:ENST00000243563.8:ENST00000601393.1:ENST00000598923.1:ENST00000600456.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	39	2	4.7486	4.803649999999999	4.8587	0.00695662	0.00418965	0.0718189	0.0591344
chr2	131508136	131508236	867109	0	+	0.37	(0.35,0.378]	chr2	97372	2	SS3_PROX	SS3_PROX:INTRON	SMPD4BP	ENSG00000152117.18	ENST00000438378.2:ENST00000415574.6	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript:transcribed_processed_pseudogene	0	39	2	4.7486	4.803649999999999	4.8587	0.00695662	0.00418965	0.0718189	0.0591344
chr1	112682338	112682438	186957	0	+	0.5	(0.476,0.515]	chr1	20706	52	INTRON	INTRON	MOV10	ENSG00000155363.19	ENST00000413052.6:ENST00000369645.6:ENST00000686097.1:ENST00000690243.1:ENST00000686428.1:ENST00000369644.5:ENST00000496577.5:ENST00000475429.5:ENST00000468624.5:ENST00000465579.1:ENST00000357443.2:ENST00000687509.1:ENST00000689955.1:ENST00000685268.1:ENST00000686923.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	38	2	4.69918	4.803395	4.90761	0.00400966	0.00386428	0.057767	0.0542786
chr15	87580191	87580291	6255356	0	-	0.49	(0.476,0.515]	chr15	596826	368	INTRON	INTRON	ENSG00000259560	ENSG00000259560.2	ENST00000665121.1:ENST00000560439.1	lncRNA	lncRNA	lncRNA	lncRNA	0	38	2	4.69918	4.803395	4.90761	0.00400966	0.00386428	0.057767	0.0542786
chr3	17440312	17440412	1627391	0	-	0.48	(0.476,0.515]	chr3	168186	114	INTRON	INTRON	TBC1D5	ENSG00000131374.15	ENST00000253692.11:ENST00000696125.1:ENST00000414318.2:ENST00000429383.8:ENST00000446818.6:ENST00000415814.6:ENST00000452492.6:ENST00000412981.5:ENST00000428355.5:ENST00000425944.5:ENST00000430169.5:ENST00000445294.5:ENST00000414349.5:ENST00000443499.6:ENST00000444756.5:ENST00000497531.5:ENST00000443386.5:ENST00000507877.5:ENST00000446863.5:ENST00000434420.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	38	2	4.69918	4.803395	4.90761	0.00400966	0.00386428	0.057767	0.0542786
chr7	30299776	30299876	3300581	0	+	0.51	(0.476,0.515]	chr7	306473	109	INTRON	INTRON	ZNRF2	ENSG00000180233.11	ENST00000323037.5	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.69918	4.803395	4.90761	0.00400966	0.00386428	0.057767	0.0542786
chr2	235559730	235559830	1041994	0	+	0.23	[0,0.28]	chr2	111222	348	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1:ENST00000402604.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	42	2	4.69191	4.803025	4.91414	0.0269474	0.0064519	0.123442	0.0730725
chr5	54039307	54039407	2618197	0	-	0.23	[0,0.28]	chr5	248835	1273	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	42	2	4.69191	4.803025	4.91414	0.0269474	0.0064519	0.123442	0.0730725
chr9	111383926	111384021	4314249	0	-	0.263158	[0,0.28]	chr9	396658	2	INTRON	INTRON	ECPAS	ENSG00000136813.15	ENST00000684092.1:ENST00000338205.9:ENST00000259335.8	protein_coding	protein_coding	protein_coding	protein_coding	0	42	2	4.69191	4.803025	4.91414	0.0269474	0.0064519	0.123442	0.0730725
chr1	175976894	175976993	589390	0	-	0.232323	[0,0.28]	chr1	70872	85	INTRON	INTRON	COP1	ENSG00000143207.21	ENST00000367669.8:ENST00000367667.5:ENST00000461830.6:ENST00000367666.5:ENST00000649803.1:ENST00000308769.12	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	42	2	4.78142	4.802875	4.82433	0.0200334	0.00943974	0.109608	0.0861183
chr13	102651697	102651797	5532563	0	+	0.22	[0,0.28]	chr13	528765	3	SS5_PROX	SS5_PROX:INTRON	TPP2	ENSG00000134900.12	ENST00000376052.5:ENST00000651448.1:ENST00000376065.8:ENST00000652308.1:ENST00000651544.1:ENST00000651748.1:ENST00000651921.1:ENST00000490420.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	42	2	4.78142	4.802875	4.82433	0.0200334	0.00943974	0.109608	0.0861183
chr15	63672095	63672195	6199238	0	-	0.25	[0,0.28]	chr15	591223	2	SS5_PROX	SS5_PROX:INTRON	HERC1	ENSG00000103657.14	ENST00000443617.7	protein_coding	protein_coding	protein_coding	protein_coding	0	42	2	4.78142	4.802875	4.82433	0.0200334	0.00943974	0.109608	0.0861183
chr18	35335758	35335857	6961960	0	-	0.20202	[0,0.28]	chr18	688889	37	UTR3	UTR3:EXON_MRNA	ZNF24	ENSG00000172466.16	ENST00000399061.3:ENST00000261332.11:ENST00000589881.5	protein_coding	protein_coding	protein_coding	protein_coding	0	42	2	4.78142	4.802875	4.82433	0.0200334	0.00943974	0.109608	0.0861183
chr8	31082824	31082917	3728432	0	+	0.27957	[0,0.28]	chr8	346570	12	INTRON	INTRON	WRN	ENSG00000165392.11	ENST00000650667.1:ENST00000298139.7:ENST00000651642.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	42	2	4.78142	4.802875	4.82433	0.0200334	0.00943974	0.109608	0.0861183
chr4	152790817	152790916	2065234	0	+	0.525253	(0.515,0.57]	chr4	204403	102	INTRON	INTRON	ARFIP1	ENSG00000164144.16	ENST00000451320.6:ENST00000429148.6:ENST00000353617.7:ENST00000405727.6:ENST00000356064.3:ENST00000510831.5:ENST00000509413.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	37	2	4.50102	4.80275	5.10448	0.00510768	0.0010345	0.0646039	0.029231300000000002
chr22	41304170	41304269	7522729	0	+	0.454545	(0.44,0.476]	chr22	768798	20	INTRON	INTRON	ZC3H7B	ENSG00000100403.12	ENST00000352645.5:ENST00000486331.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	38	2	4.70355	4.801775	4.9	0.00423315	0.00383786	0.0572185	0.0562562
chr3	141545390	141545490	1525232	0	+	0.45	(0.44,0.476]	chr3	158846	44	INTRON	INTRON	RASA2	ENSG00000155903.14	ENST00000286364.9	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.70355	4.801775	4.9	0.00423315	0.00383786	0.0572185	0.0562562
chr6	135035557	135035656	3225275	0	-	0.464646	(0.44,0.476]	chr6	299841	85	INTRON	INTRON	HBS1L	ENSG00000112339.15	ENST00000367837.10:ENST00000415177.6:ENST00000367826.6:ENST00000533274.5:ENST00000526100.5:ENST00000314674.7:ENST00000524715.5:ENST00000529882.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	38	2	4.70355	4.801775	4.9	0.00423315	0.00383786	0.0572185	0.0562562
chr1	202519178	202519277	294496	0	+	0.323232	(0.32,0.35]	chr1	33886	164	INTRON	INTRON	PPP1R12B	ENSG00000077157.22	ENST00000391959.5:ENST00000608999.6:ENST00000290419.9:ENST00000491336.5:ENST00000466273.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	114	2	3.31229	4.801254999999999	6.29022	2.2038e-4	4.1166e-5	0.0130276	0.00544123
chr11	67274465	67274564	4813951	0	+	0.40404	(0.378,0.408]	chr11	448241	31	INTRON	INTRON	GRK2	ENSG00000173020.11	ENST00000308595.10:ENST00000526285.1:ENST00000530291.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	40	2	4.31699	4.8011	5.28521	0.0250408	4.52877e-4	0.12011	0.0192381
chr1	153976263	153976334	558110	0	-	0.478873	(0.476,0.515]	chr1	66165	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	JTB	ENSG00000143543.15	ENST00000271843.9:ENST00000368589.5:ENST00000356648.5:ENST00000428469.1:ENST00000461365.1:ENST00000471173.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	83	2	3.77334	4.80098	5.82862	3.52709e-4	3.00692e-5	0.0174637	0.00436729
chr12	50418709	50418807	5136514	0	+	0.44898	(0.44,0.476]	chr12	484368	19	INTRON	INTRON	LARP4	ENSG00000161813.23	ENST00000550522.5:ENST00000293618.12:ENST00000429001.7:ENST00000398473.7:ENST00000548174.5:ENST00000548697.5:ENST00000548993.5:ENST00000522085.5:ENST00000518444.5:ENST00000551886.5:ENST00000523389.5:ENST00000518561.5:ENST00000347328.9:ENST00000550260.1:ENST00000517559.5:ENST00000552445.1	protein_coding	protein_coding	protein_coding	protein_coding	1	78	2	3.8307	4.800655	5.77061	1.81621e-4	1.44264e-4	0.0117212	0.0109794
chr1	229336715	229336815	652551	0	-	0.34	(0.32,0.35]	chr1	77248	88	INTRON	INTRON	CCSAP	ENSG00000154429.11	ENST00000366687.5:ENST00000284617.7:ENST00000366686.1:ENST00000483092.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	40	2	4.53988	4.800635	5.06139	0.0202178	0.00179023	0.109913	0.0392749
chr12	64492696	64492779	5153837	0	+	0.349398	(0.32,0.35]	chr12	488009	2	INTRON	INTRON	TBK1	ENSG00000183735.11	ENST00000676684.1:ENST00000677499.1:ENST00000677641.1:ENST00000676654.1:ENST00000652537.1:ENST00000676809.1:ENST00000650790.1:ENST00000652657.1:ENST00000676912.1:ENST00000677686.1:ENST00000652389.1:ENST00000331710.10:ENST00000651262.1:ENST00000677632.1:ENST00000650997.1:ENST00000678180.1:ENST00000676930.1:ENST00000650762.1:ENST00000650786.1:ENST00000677831.1:ENST00000651014.1:ENST00000651878.1:ENST00000678197.1:ENST00000650708.1:ENST00000677435.1:ENST00000676587.1:ENST00000678567.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	40	2	4.53988	4.800635	5.06139	0.0202178	0.00179023	0.109913	0.0392749
chr1	93352020	93352119	164258	0	+	0.343434	(0.32,0.35]	chr1	17840	48	INTRON	INTRON	DR1	ENSG00000117505.13	ENST00000370272.9:ENST00000370267.1	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	4.36755	4.800409999999999	5.23327	0.0300552	9.33826e-4	0.129138	0.0278746
chr3	138810540	138810640	1831258	0	-	0.34	(0.32,0.35]	chr3	184062	136	INTRON	INTRON	PIK3CB	ENSG00000051382.9	ENST00000674063.1:ENST00000477593.5:ENST00000462898.5:ENST00000483968.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	41	2	4.36755	4.800409999999999	5.23327	0.0300552	9.33826e-4	0.129138	0.0278746
chr1	10285208	10285307	21418	0	+	0.353535	(0.35,0.378]	chr1	2130	23	INTRON	INTRON	KIF1B	ENSG00000054523.20	ENST00000676179.1:ENST00000377093.9:ENST00000696500.1:ENST00000263934.10:ENST00000696502.1:ENST00000696503.1:ENST00000696504.1:ENST00000377086.5:ENST00000377083.5:ENST00000377081.5:ENST00000620295.2:ENST00000622724.3:ENST00000696507.1:ENST00000497835.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	40	2	4.39303	4.80023	5.20743	0.0237246	7.78116e-4	0.118716	0.0256531
chr19	42231764	42231864	7186172	0	-	0.36	(0.35,0.378]	chr19	727111	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GSK3A	ENSG00000105723.13	ENST00000677025.1:ENST00000222330.8:ENST00000398249.8:ENST00000453535.1:ENST00000677702.1:ENST00000493059.1:ENST00000679279.1:ENST00000678692.1:ENST00000678008.1:ENST00000677575.1:ENST00000677897.1:ENST00000677464.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	40	2	4.39303	4.80023	5.20743	0.0237246	7.78116e-4	0.118716	0.0256531
chr8	1781944	1782043	3691167	0	+	0.323232	(0.32,0.35]	chr8	342602	15	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	CLN8	ENSG00000182372.10	ENST00000331222.6:ENST00000636934.1:ENST00000635970.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	40	2	4.64046	4.800085	4.95971	0.00724767	0.00663522	0.0756327	0.0703181
chr22	19906412	19906511	7555960	0	-	0.525253	(0.515,0.57]	chr22	772518	70	INTRON	INTRON	TXNRD2	ENSG00000184470.21	ENST00000400518.5:ENST00000542719.6:ENST00000494454.5:ENST00000474308.5:ENST00000400525.6:ENST00000400521.7:ENST00000400519.6:ENST00000635155.1:ENST00000491939.6:ENST00000334363.14:ENST00000475995.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	236	2	4.00678	4.79998	5.59318	3.16416e-7	4.43708e-10	3.0658e-4	4.19015e-6
chr2	62302236	62302336	790349	0	+	0.41	(0.408,0.44]	chr2	88708	44	INTRON	INTRON	ENSG00000228541	ENSG00000228541.2	ENST00000688476.1:ENST00000689590.1:ENST00000687402.1:ENST00000687773.1	lncRNA	lncRNA	lncRNA	lncRNA	2	104	2	3.40063	4.799945	6.19926	1.06576e-4	1.98542e-5	0.00874587	0.00360253
chr1	151210133	151210232	224985	0	+	0.606061	(0.57,1]	chr1	25634	106	INTRON	INTRON	PIP5K1A	ENSG00000143398.20	ENST00000447555.5:ENST00000349792.9:ENST00000368888.9:ENST00000409426.5:ENST00000368890.8:ENST00000441902.6:ENST00000424999.1:ENST00000454769.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	54	2	4.067	4.799910000000001	5.53282	2.30559e-5	7.64124e-6	0.00391568	0.00197283
chr3	122411563	122411660	1487780	0	+	0.505155	(0.476,0.515]	chr3	155407	19	UTR3	UTR3:EXON_MRNA	FAM162A	ENSG00000114023.16	ENST00000692876.1:ENST00000693245.1:ENST00000477892.5:ENST00000686831.1:ENST00000688631.1:ENST00000684791.1:ENST00000689215.1:ENST00000686446.1:ENST00000688900.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	43	2	4.10113	4.7999	5.49867	0.0226984	4.28561e-4	0.124921	0.0189958
chr6	31667288	31667385	2843392	0	+	0.505155	(0.476,0.515]	chr6	267723	5	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CSNK2B	ENSG00000204435.15	ENST00000677388.1:ENST00000677536.1:ENST00000677758.1:ENST00000375885.8:ENST00000375882.7:ENST00000468255.5:ENST00000465481.6:ENST00000481269.1:ENST00000475875.2:ENST00000375865.6:ENST00000375866.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	43	2	4.10113	4.7999	5.49867	0.0226984	4.28561e-4	0.124921	0.0189958
chr14	34956949	34957048	5868913	0	-	0.40404	(0.378,0.408]	chr14	557461	16	INTRON	INTRON	SRP54-AS1	ENSG00000258704.7	ENST00000692503.1:ENST00000690110.1:ENST00000690001.1:ENST00000688072.1:ENST00000693002.1:ENST00000556355.5:ENST00000555015.5:ENST00000693259.1:ENST00000636540.1	transcribed_unitary_pseudogene	processed_transcript	transcribed_unitary_pseudogene	processed_transcript:transcribed_unitary_pseudogene	0	40	2	4.42349	4.79988	5.17627	0.00992961	0.00208234	0.0877296	0.0411801
chr5	27480837	27480935	2329675	0	+	0.255102	[0,0.28]	chr5	225110	27	INTRON	INTRON	PURPL	ENSG00000250337.8	ENST00000651409.1:ENST00000650981.1:ENST00000655107.1:ENST00000657375.2:ENST00000659077.1:ENST00000653835.1:ENST00000657173.1:ENST00000514844.6:ENST00000657424.1:ENST00000660307.1:ENST00000669423.1:ENST00000659860.1:ENST00000652841.1:ENST00000686605.1:ENST00000690628.1:ENST00000510165.6:ENST00000670554.1:ENST00000665451.1:ENST00000667624.1:ENST00000667420.1:ENST00000660639.1:ENST00000668406.1:ENST00000656783.1:ENST00000512067.5:ENST00000664566.1:ENST00000659489.1:ENST00000667264.1:ENST00000670840.1:ENST00000503107.2:ENST00000654039.1:ENST00000687778.1:ENST00000505775.5:ENST00000668103.1:ENST00000664501.1:ENST00000661698.1:ENST00000655438.1:ENST00000514255.1	lncRNA	lncRNA	lncRNA	lncRNA	1	102	2	3.18138	4.799440000000001	6.4175	0.00487606	1.23186e-4	0.0640618	0.00998846
chr11	12965714	12965813	4915829	0	-	0.363636	(0.35,0.378]	chr11	460662	1	INTRON	INTRON	LINC00958	ENSG00000251381.8	ENST00000658243.1:ENST00000527945.2	lncRNA	lncRNA	lncRNA	lncRNA	1	82	2	3.69928	4.799435	5.89959	3.94786e-4	1.52893e-4	0.0178567	0.0112857
chr19	24094204	24094303	7044479	0	+	0.333333	(0.32,0.35]	chr19	702396	18	INTRON	INTRON	ZNF254	ENSG00000213096.11	ENST00000613065.4:ENST00000611359.3:ENST00000616028.2:ENST00000594886.5:ENST00000339642.10:ENST00000357002.5:ENST00000595187.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	41	2	4.46758	4.799405	5.13123	0.0119306	0.00394704	0.0962115	0.0548259
chr2	30468910	30469010	727036	0	+	0.34	(0.32,0.35]	chr2	83971	88	INTRON	INTRON	LCLAT1	ENSG00000172954.14	ENST00000466477.5:ENST00000465200.5:ENST00000319406.8:ENST00000379509.8:ENST00000491680.6:ENST00000488144.5:ENST00000465538.5:ENST00000309052.8:ENST00000478015.5:ENST00000476038.5:ENST00000497423.1:ENST00000476535.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	41	2	4.46758	4.799405	5.13123	0.0119306	0.00394704	0.0962115	0.0548259
chr20	62056204	62056304	7360821	0	-	0.43	(0.408,0.44]	chr20	750714	411	INTRON	INTRON	TAF4	ENSG00000130699.20	ENST00000252996.9:ENST00000608887.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	104	2	3.48204	4.799205	6.11637	6.71132e-5	3.037e-5	0.00678102	0.00456454
chr2	9608471	9608571	1064756	0	-	0.41	(0.408,0.44]	chr2	113598	166	INTRON	INTRON	YWHAQ	ENSG00000134308.14	ENST00000238081.8:ENST00000381844.8:ENST00000474715.1:ENST00000446619.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	38	2	4.59979	4.79908	4.99837	0.0109537	0.00131369	0.0873034	0.0333932
chr3	37129748	37129848	1656166	0	-	0.43	(0.408,0.44]	chr3	170007	2	INTRON	INTRON	LRRFIP2	ENSG00000093167.18	ENST00000336686.9:ENST00000354379.8:ENST00000421276.6:ENST00000396428.6:ENST00000440230.5:ENST00000416425.5:ENST00000461672.5:ENST00000438374.5:ENST00000452742.5:ENST00000436858.5:ENST00000434749.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	38	2	4.59979	4.79908	4.99837	0.0109537	0.00131369	0.0873034	0.0333932
chr16	16548500	16548600	6311347	0	+	0.41	(0.408,0.44]	chr16	604098	485	INTRON	INTRON	ENSG00000260126	ENSG00000260126.2	ENST00000567465.2	lncRNA	lncRNA	lncRNA	lncRNA	3	234	2	4.51082	4.798835	5.08685	2.26408e-7	6.19267e-8	2.45719e-4	1.07836e-4
chr4	20732855	20732955	1927804	0	+	0.33	(0.32,0.35]	chr4	193898	4	INTRON	INTRON	PACRGL	ENSG00000163138.19	ENST00000471979.6:ENST00000506702.5:ENST00000507634.5:ENST00000467997.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	85	2	3.75694	4.79881	5.84068	3.37248e-4	3.015e-4	0.0163178	0.0160895
chr1	113736714	113736813	525196	0	-	0.414141	(0.408,0.44]	chr1	61795	98	INTRON	INTRON	PHTF1	ENSG00000116793.16	ENST00000369604.6:ENST00000393357.6:ENST00000369600.5:ENST00000369598.5:ENST00000357783.6:ENST00000472612.5:ENST00000486855.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	38	2	4.7041	4.798685000000001	4.89327	0.00458906	0.00381677	0.0595107	0.0562562
chr2	96600744	96600844	1180782	0	-	0.41	(0.408,0.44]	chr2	126399	22	INTRON	INTRON	KANSL3	ENSG00000114982.19	ENST00000354204.10:ENST00000431828.6:ENST00000487070.5:ENST00000447759.5:ENST00000420155.5:ENST00000670907.1:ENST00000666923.1:ENST00000484020.1:ENST00000597150.5:ENST00000444759.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	38	2	4.7041	4.798685000000001	4.89327	0.00458906	0.00381677	0.0595107	0.0562562
chr8	47827161	47827261	3944358	0	-	0.27	[0,0.28]	chr8	361640	3	SS3_PROX	SS3_PROX:INTRON	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7	protein_coding	protein_coding	protein_coding	protein_coding	0	42	2	4.62084	4.798515	4.97619	0.0313633	0.00535756	0.13151	0.0663076
chr9	131474288	131474353	4217788	0	+	0.2	[0,0.28]	chr9	386803	2	SS3_PROX	SS3_PROX:INTRON	PRRC2B	ENSG00000288701.1	ENST00000684596.1:ENST00000683519.1:ENST00000682501.1	protein_coding	protein_coding	protein_coding	protein_coding	0	44	2	4.29536	4.79823	5.3011	0.0590175	0.00185843	0.167915	0.039946
chr5	79618559	79618651	2398787	0	+	0.293478	(0.28,0.32]	chr5	231687	6	INTRON	INTRON	TENT2	ENSG00000164329.14	ENST00000505571.5:ENST00000423041.6:ENST00000504233.5:ENST00000453514.6:ENST00000428308.6:ENST00000515807.5:ENST00000296783.7:ENST00000514095.5:ENST00000508620.5:ENST00000503620.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	144	2	3.01425	4.79821	6.58217	2.70987e-4	2.04903e-5	0.0146168	0.00367732
chr1	51724626	51724725	100470	0	+	0.313131	(0.28,0.32]	chr1	13265	102	INTRON	INTRON	OSBPL9	ENSG00000117859.19	ENST00000371714.5:ENST00000428468.6:ENST00000447887.5:ENST00000495776.5:ENST00000435274.6:ENST00000453295.5:ENST00000489990.5:ENST00000484890.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	41	2	4.50981	4.7980149999999995	5.08622	0.0275554	0.00227525	0.123904	0.0437013
chr1	180979819	180979918	595911	0	-	0.30303	(0.28,0.32]	chr1	71220	28	INTRON	INTRON	STX6	ENSG00000135823.14	ENST00000542060.5:ENST00000258301.6:ENST00000469135.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	41	2	4.50981	4.7980149999999995	5.08622	0.0275554	0.00227525	0.123904	0.0437013
chr20	62915899	62915998	7362348	0	-	0.282828	(0.28,0.32]	chr20	751210	11	INTRON	INTRON	DIDO1	ENSG00000101191.17	ENST00000266070.8:ENST00000395343.6:ENST00000395340.5:ENST00000370371.8:ENST00000370368.5:ENST00000354665.8	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	4.50981	4.7980149999999995	5.08622	0.0275554	0.00227525	0.123904	0.0437013
chr10	48430192	48430292	4432238	0	+	0.53	(0.515,0.57]	chr10	408627	4	EXON_MRNA	EXON_MRNA:INTRON	MAPK8	ENSG00000107643.17	ENST00000395611.7:ENST00000374189.6:ENST00000374179.8:ENST00000360332.7:ENST00000374182.7:ENST00000374176.8:ENST00000469879.6:ENST00000469110.1:ENST00000459755.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	36	2	4.59914	4.797745	4.99635	0.00616166	8.06602e-4	0.0676501	0.0258804
chr17	44480787	44480887	6780614	0	-	0.52	(0.515,0.57]	chr17	668697	55	INTRON	INTRON	GPATCH8	ENSG00000186566.13	ENST00000591680.6:ENST00000587228.5:ENST00000585614.1:ENST00000590041.5:ENST00000592746.5:ENST00000586037.5:ENST00000592154.1:ENST00000588554.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	36	2	4.59914	4.797745	4.99635	0.00616166	8.06602e-4	0.0676501	0.0258804
chr6	57155041	57155140	2878728	0	+	0.282828	(0.28,0.32]	chr6	273319	6	INTRON	INTRON	ZNF451	ENSG00000112200.17	ENST00000357489.7:ENST00000370706.9:ENST00000504603.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	43	2	4.2432	4.7975449999999995	5.35189	0.0479043	8.52844e-4	0.153019	0.0264928
chr1	174478144	174478244	260313	0	+	0.32	(0.28,0.32]	chr1	30824	287	INTRON	INTRON	RABGAP1L	ENSG00000152061.24	ENST00000357444.10:ENST00000251507.8:ENST00000681986.1:ENST00000367690.5:ENST00000526253.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	41	2	4.6061	4.797409999999999	4.98872	0.0102724	0.00838468	0.089002	0.0774402
chr8	38306735	38306834	3936652	0	-	0.292929	(0.28,0.32]	chr8	360757	9	INTRON	INTRON	NSD3	ENSG00000147548.17	ENST00000317025.13:ENST00000433384.6:ENST00000527502.5	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	4.6061	4.797409999999999	4.98872	0.0102724	0.00838468	0.089002	0.0774402
chr16	323073	323173	6426560	0	-	0.52	(0.515,0.57]	chr16	617500	80	INTRON	INTRON	AXIN1	ENSG00000103126.15	ENST00000262320.8:ENST00000461023.5:ENST00000354866.7:ENST00000481769.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	36	2	4.68568	4.7974	4.90912	0.00270027	0.0021669	0.0479115	0.0417866
chr17	76636502	76636601	6843598	0	-	0.555556	(0.515,0.57]	chr17	676980	23	INTRON	INTRON	ST6GALNAC1	ENSG00000070526.15	ENST00000592042.5:ENST00000156626.12:ENST00000359088.9:ENST00000590878.1:ENST00000589813.5:ENST00000590915.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	36	2	4.68568	4.7974	4.90912	0.00270027	0.0021669	0.0479115	0.0417866
chr2	197953768	197953868	970594	0	+	0.26	[0,0.28]	chr2	104858	1431	INTRON	INTRON	PLCL1	ENSG00000115896.16	ENST00000428675.6:ENST00000435320.1:ENST00000487695.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	48	2	4.07901	4.796945	5.51488	0.0494049	0.00314116	0.174117	0.0500389
chr16	21625519	21625615	6319206	0	+	0.333333	(0.32,0.35]	chr16	604936	4	SS5_PROX	SS5_PROX:INTRON	METTL9	ENSG00000197006.15	ENST00000567404.5:ENST00000396014.8:ENST00000358154.8:ENST00000568826.1	protein_coding	protein_coding	protein_coding	protein_coding	4	162	2	3.30318	4.7966999999999995	6.29022	4.1166e-5	1.39114e-5	0.00544123	0.00278603
chr5	28934081	28934181	2331093	0	+	0.26	[0,0.28]	chr5	225139	69	INTRON	INTRON	LINC02109	ENSG00000259786.7	ENST00000658190.1	lncRNA	lncRNA	lncRNA	lncRNA	0	45	2	4.28915	4.796695	5.30424	0.0319595	0.00584781	0.14477	0.0667594
chr16	209495	209588	6425988	0	-	0.376344	(0.35,0.378]	chr16	617436	10	EXON_MRNA	EXON_MRNA:INTRON	LUC7L	ENSG00000007392.17	ENST00000337351.8:ENST00000426094.5:ENST00000397783.5:ENST00000629543.2:ENST00000490762.5:ENST00000293872.13:ENST00000464711.5:ENST00000419516.5:ENST00000397780.5:ENST00000418978.5:ENST00000430864.5:ENST00000443357.5:ENST00000494366.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	109	2	3.42942	4.79669	6.16396	1.04286e-4	4.50523e-5	0.00863456	0.00579854
chr9	123167391	123167490	4339457	0	-	0.464646	(0.44,0.476]	chr9	398906	60	INTRON	INTRON	STRBP	ENSG00000165209.19	ENST00000348403.10:ENST00000447404.6:ENST00000360998.3:ENST00000407982.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	78	2	3.71727	4.79645	5.87563	3.2089e-4	8.84961e-5	0.0159645	0.00842626
chr9	123210784	123210884	4339899	0	-	0.35	(0.32,0.35]	chr9	398947	261	INTRON	INTRON	STRBP	ENSG00000165209.19	ENST00000348403.10:ENST00000360998.3:ENST00000407982.6:ENST00000479114.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	85	2	3.68775	4.79645	5.90515	4.66127e-4	2.30541e-4	0.0195589	0.013917
chr5	72227275	72227367	2639859	0	-	0.282609	(0.28,0.32]	chr5	250916	1	EXON_MRNA	EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MRPS27	ENSG00000113048.18	ENST00000694990.1:ENST00000694989.1:ENST00000522042.2:ENST00000694988.1:ENST00000261413.10:ENST00000513900.6:ENST00000695403.1:ENST00000523654.6:ENST00000694998.1:ENST00000694997.1:ENST00000695298.1:ENST00000694996.1:ENST00000694995.1:ENST00000519143.6:ENST00000694994.1:ENST00000695297.1:ENST00000695296.1:ENST00000694993.1:ENST00000694992.1:ENST00000694991.1:ENST00000694999.1:ENST00000457646.9:ENST00000515226.5:ENST00000695404.1:ENST00000508863.6:ENST00000522562.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	43	2	4.33863	4.796255	5.25388	0.0207276	0.00385849	0.122348	0.0542786
chr8	129348230	129348329	4058742	0	-	0.313131	(0.28,0.32]	chr8	369545	31	INTRON	INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000657400.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1	lncRNA	lncRNA	lncRNA	lncRNA	0	43	2	4.33863	4.796255	5.25388	0.0207276	0.00385849	0.122348	0.0542786
chr9	124683907	124684007	4348341	0	-	0.32	(0.28,0.32]	chr9	399255	882	INTRON	INTRON	NR6A1	ENSG00000148200.17	ENST00000487099.7:ENST00000373584.7:ENST00000416460.6:ENST00000344523.8	protein_coding	protein_coding	protein_coding	protein_coding	0	43	2	4.33863	4.796255	5.25388	0.0207276	0.00385849	0.122348	0.0542786
chr3	13347396	13347496	1617852	0	-	0.44	(0.408,0.44]	chr3	167134	37	INTRON	INTRON	NUP210	ENSG00000132182.13	ENST00000254508.7:ENST00000695490.1:ENST00000695491.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	144	2	2.73586	4.796125	6.85639	2.9686e-4	4.71601e-7	0.0154293	3.94833e-4
chr16	29602638	29602737	6471627	0	-	0.484848	(0.476,0.515]	chr16	625301	78	INTRON	INTRON	ENSG00000288632	ENSG00000288632.1	ENST00000675579.1	lncRNA	lncRNA	lncRNA	lncRNA	0	40	2	4.24501	4.79545	5.34589	0.0247713	3.224e-4	0.12011	0.0159645
chr1	39573840	39573937	427767	0	-	0.43299	(0.408,0.44]	chr1	51951	14	EXON_MRNA	EXON_MRNA:INTRON	PABPC4	ENSG00000090621.15	ENST00000677006.1:ENST00000372858.8:ENST00000372856.7:ENST00000372857.7:ENST00000372862.7:ENST00000676523.1:ENST00000677548.1:ENST00000678980.1:ENST00000677244.1:ENST00000677609.1:ENST00000679246.1:ENST00000678287.1:ENST00000678625.1:ENST00000470443.6:ENST00000451091.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	146	2	3.51579	4.79471	6.07363	1.76194e-5	7.09547e-6	0.00338392	0.00188852
chr1	235398906	235399006	339989	0	+	0.5	(0.476,0.515]	chr1	39551	184	INTRON	INTRON	TBCE	ENSG00000285053.1:ENSG00000284770.2	ENST00000644055.1:ENST00000645655.1:ENST00000647428.1:ENST00000643418.1:ENST00000646624.1:ENST00000647186.1:ENST00000646528.1:ENST00000645351.1:ENST00000643410.1:ENST00000645205.1:ENST00000645836.1:ENST00000642503.1:ENST00000646281.1:ENST00000645069.1:ENST00000644680.1:ENST00000643758.1:ENST00000645578.1:ENST00000642431.1:ENST00000644604.1:ENST00000651186.1:ENST00000643125.1:ENST00000406207.5:ENST00000642463.1:ENST00000645899.1:ENST00000647233.1:ENST00000642926.1:ENST00000644578.1:ENST00000647418.1:ENST00000645372.1:ENST00000645582.1:ENST00000643994.1:ENST00000647407.1:ENST00000642610.2:ENST00000644037.1:ENST00000646463.1:ENST00000366601.8:ENST00000643524.1:ENST00000646536.1:ENST00000643142.1:ENST00000644838.1:ENST00000646286.1:ENST00000646186.1:ENST00000643615.1:ENST00000543662.4:ENST00000646848.1:ENST00000647332.1:ENST00000647489.1:ENST00000644625.1:ENST00000646384.1:ENST00000645551.1:ENST00000646821.1:ENST00000472011.6:ENST00000643238.1:ENST00000646104.1:ENST00000645662.1:ENST00000643993.1:ENST00000645964.1:ENST00000642339.1:ENST00000644217.1:ENST00000642372.1:ENST00000646929.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	38	2	4.53023	4.79435	5.05847	0.0119748	0.00108081	0.0899583	0.0300133
chr16	16329960	16330060	6310627	0	+	0.5	(0.476,0.515]	chr16	604014	4	SS5_PROX	SS5_PROX:INTRON	ENSG00000183889	ENSG00000183889.12	ENST00000537112.5	protein_coding	processed_transcript	protein_coding	processed_transcript	0	38	2	4.53023	4.79435	5.05847	0.0119748	0.00108081	0.0899583	0.0300133
chr19	37233353	37233453	7060346	0	+	0.51	(0.476,0.515]	chr19	704895	25	INTRON	INTRON	ZNF383	ENSG00000188283.12	ENST00000586068.5:ENST00000590503.5:ENST00000684119.1:ENST00000589413.5:ENST00000352998.7:ENST00000588371.1:ENST00000588250.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	38	2	4.53023	4.79435	5.05847	0.0119748	0.00108081	0.0899583	0.0300133
chr2	86166107	86166207	1170865	0	-	0.49	(0.476,0.515]	chr2	124965	2	SS5_PROX	SS5_PROX:INTRON	IMMT	ENSG00000132305.22	ENST00000449247.6:ENST00000254636.9:ENST00000410111.8:ENST00000442664.6:ENST00000419070.6:ENST00000409051.6:ENST00000474969.5:ENST00000490238.5:ENST00000409258.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	38	2	4.53023	4.79435	5.05847	0.0119748	0.00108081	0.0899583	0.0300133
chr9	114373692	114373792	4320688	0	-	0.43	(0.408,0.44]	chr9	397668	2	SS5_PROX	SS5_PROX:INTRON	AKNA	ENSG00000106948.17	ENST00000307564.8:ENST00000374088.8:ENST00000374075.9:ENST00000223791.7:ENST00000312033.3	protein_coding	protein_coding	protein_coding	protein_coding	1	84	2	4.39665	4.794335	5.19202	0.0016671	7.2191e-6	0.0369207	0.00190592
chr1	38017870	38017963	74320	0	+	0.505376	(0.476,0.515]	chr1	9599	1	SS5_PROX	SS5_PROX:INTRON	UTP11	ENSG00000183520.12	ENST00000483182.5:ENST00000373014.5:ENST00000488453.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	40	2	4.32915	4.7943	5.25945	0.0124637	0.00111445	0.0973643	0.0306328
chr5	40718689	40718789	2610389	0	-	0.48	(0.476,0.515]	chr5	248191	18	INTRON	INTRON	TTC33	ENSG00000113638.14	ENST00000636863.1:ENST00000637375.1:ENST00000636106.1:ENST00000337702.5:ENST00000503936.6:ENST00000504251.6:ENST00000511730.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	38	2	4.61519	4.7938600000000005	4.97253	0.00528365	0.00311573	0.0656295	0.0498063
chr6	150890975	150891075	2998116	0	+	0.49	(0.476,0.515]	chr6	280505	26	INTRON	INTRON	MTHFD1L	ENSG00000120254.16	ENST00000611279.4:ENST00000367321.8:ENST00000367307.8:ENST00000367308.8:ENST00000618312.4:ENST00000441122.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	38	2	4.61519	4.7938600000000005	4.97253	0.00528365	0.00311573	0.0656295	0.0498063
chr9	128979527	128979627	4208183	0	+	0.48	(0.476,0.515]	chr9	385313	2	SS5_PROX	SS5_PROX:INTRON	NUP188	ENSG00000095319.14	ENST00000372577.2	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.61519	4.7938600000000005	4.97253	0.00528365	0.00311573	0.0656295	0.0498063
chr1	2264742	2264842	2531	0	+	0.42	(0.408,0.44]	chr1	557	163	INTRON	INTRON	SKI	ENSG00000157933.10	ENST00000378536.5:ENST00000508416.1:ENST00000478223.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	78	2	3.71874	4.793765	5.86879	3.17998e-4	1.0135e-4	0.0159645	0.00906611
chr22	16784211	16784310	7546241	0	-	0.434343	(0.408,0.44]	chr22	771312	6	CDS	CDS:EXON_MRNA	XKR3	ENSG00000172967.8	ENST00000331428.5:ENST00000684488.1	protein_coding	protein_coding	protein_coding	protein_coding	1	78	2	3.71874	4.793765	5.86879	3.17998e-4	1.0135e-4	0.0159645	0.00906611
chr19	9669247	9669347	7133446	0	-	0.29	(0.28,0.32]	chr19	718911	80	INTRON	INTRON	ZNF562	ENSG00000171466.10	ENST00000453372.7:ENST00000293648.8:ENST00000590155.5:ENST00000585688.5:ENST00000587392.5:ENST00000588653.5:ENST00000589542.1:ENST00000585350.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	42	2	4.4334	4.79349	5.15358	0.0163355	0.0052282	0.109464	0.0633615
chr7	148875540	148875640	3670676	0	-	0.37	(0.35,0.378]	chr7	340632	43	INTRON	INTRON	EZH2	ENSG00000106462.12	ENST00000683292.1:ENST00000320356.7:ENST00000492143.5:ENST00000478654.5:ENST00000350995.6:ENST00000460911.5:ENST00000683744.1:ENST00000682317.1:ENST00000682263.1:ENST00000476773.5:ENST00000483967.5:ENST00000498186.5:ENST00000483012.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	143	2	2.82068	4.7934	6.76612	0.00084924900000000005	1.64835e-7	0.0267232	1.8594e-4
chr19	48808711	48808811	7199475	0	-	0.46	(0.44,0.476]	chr19	729939	4	SS3_PROX	SS3_PROX:INTRON	BCAT2	ENSG00000105552.15	ENST00000545387.6:ENST00000316273.11:ENST00000402551.5:ENST00000597011.5:ENST00000599246.5:ENST00000598162.5:ENST00000601681.5:ENST00000601496.5:ENST00000596981.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	78	2	3.67739	4.793200000000001	5.90901	3.8961e-4	7.5486e-5	0.0177751	0.00777227
chr2	26349385	26349484	715043	0	+	0.575758	(0.57,1]	chr2	82572	26	INTRON	INTRON	SELENOI	ENSG00000138018.19	ENST00000442141.5:ENST00000260585.12:ENST00000447170.1	protein_coding	protein_coding	protein_coding	protein_coding	1	53	2	4.25024	4.79316	5.33608	3.92497e-5	6.01239e-6	0.00533644	0.0017156
chr11	5309773	5309872	4896308	0	-	0.454545	(0.44,0.476]	chr11	459154	37	INTRON	INTRON	HBG2:ENSG00000239920:HBE1:OR51B5	ENSG00000196565.15:ENSG00000239920.2:ENSG00000213931.7:ENSG00000167355.8	ENST00000380252.6:ENST00000380259.7:ENST00000646569.1:ENST00000643199.1:ENST00000292896.3:ENST00000380237.5:ENST00000420726.6:ENST00000420465.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	38	2	4.5227	4.79279	5.06288	0.0128818	0.00102416	0.0926667	0.0294041
chr20	3909692	3909788	7227104	0	+	0.46875	(0.44,0.476]	chr20	734495	4	INTRON	INTRON	PANK2	ENSG00000125779.24	ENST00000497424.5:ENST00000316562.9:ENST00000495692.5:ENST00000610179.7:ENST00000643504.2:ENST00000336066.8:ENST00000646394.1:ENST00000621507.1:ENST00000471830.1:ENST00000464452.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	38	2	4.5227	4.79279	5.06288	0.0128818	0.00102416	0.0926667	0.0294041
chr4	94465570	94465670	1998519	0	+	0.47	(0.44,0.476]	chr4	199549	85	INTRON	INTRON	PDLIM5	ENSG00000163110.15	ENST00000437932.5:ENST00000615540.4:ENST00000318007.9:ENST00000380180.7:ENST00000514830.5:ENST00000509333.5:ENST00000503974.5:ENST00000317968.9:ENST00000627587.2:ENST00000542407.5:ENST00000514743.5:ENST00000508216.5:ENST00000511767.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	38	2	4.5227	4.79279	5.06288	0.0128818	0.00102416	0.0926667	0.0294041
chr4	185212452	185212551	2087402	0	+	0.454545	(0.44,0.476]	chr4	206413	18	INTRON	INTRON	SNX25	ENSG00000109762.17	ENST00000504273.5:ENST00000618785.4:ENST00000652585.2:ENST00000264694.13:ENST00000506896.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	40	2	4.33346	4.792624999999999	5.25179	0.0120349	0.00124521	0.0962115	0.0322969
chr1	19883928	19884028	40751	0	+	0.39	(0.378,0.408]	chr1	4790	8	INTRON	INTRON	OTUD3	ENSG00000169914.6	ENST00000375120.4	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.73839	4.79233	4.84627	0.00837252	0.00254319	0.0774402	0.0465056
chr10	32020821	32020921	4590452	0	-	0.24	[0,0.28]	chr10	423219	4	SS5_PROX	SS5_PROX:INTRON	KIF5B	ENSG00000170759.11	ENST00000302418.5:ENST00000493889.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	43	2	4.38387	4.7922899999999995	5.20071	0.0501911	0.00261806	0.156383	0.0470772
chr3	128757935	128758035	1497528	0	+	0.47	(0.44,0.476]	chr3	156330	312	INTRON	INTRON	RAB7A	ENSG00000075785.14	ENST00000676214.1:ENST00000675864.1:ENST00000675712.1:ENST00000676425.1:ENST00000490093.6:ENST00000675342.1:ENST00000265062.8:ENST00000674748.1:ENST00000493186.6:ENST00000482525.5:ENST00000491681.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	38	2	4.61954	4.792225	4.96491	0.00506805	0.0034249	0.0646039	0.0517761
chr8	66833092	66833191	3776297	0	+	0.50505	(0.476,0.515]	chr8	350168	14	INTRON	INTRON	SGK3	ENSG00000104205.16	ENST00000521198.7:ENST00000396596.2:ENST00000522398.5:ENST00000522629.5:ENST00000520976.5:ENST00000345714.8:ENST00000519396.5:ENST00000521152.5	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	4.34648	4.792085	5.23769	0.0193566	5.17244e-4	0.108861	0.0203753
chr12	76768972	76769072	5173894	0	+	0.27	[0,0.28]	chr12	490060	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	ZDHHC17	ENSG00000186908.15	ENST00000546778.5:ENST00000426126.7:ENST00000552453.5:ENST00000547620.5:ENST00000550876.1:ENST00000547604.1:ENST00000551407.5:ENST00000550163.5:ENST00000549682.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	43	2	4.47254	4.791435	5.11033	0.020991	0.00991388	0.122348	0.0838372
chr7	99010253	99010352	3360653	0	+	0.40404	(0.378,0.408]	chr7	313732	13	INTRON	INTRON	TRRAP	ENSG00000196367.14	ENST00000355540.7:ENST00000359863.8:ENST00000628380.2:ENST00000456197.2:ENST00000446306.7:ENST00000360902.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	39	2	4.51854	4.79133	5.06412	0.00748824	0.0030522	0.0772645	0.0493883
chr2	20321218	20321317	1076484	0	-	0.484848	(0.476,0.515]	chr2	115021	22	INTRON	INTRON	PUM2	ENSG00000055917.16	ENST00000338086.9:ENST00000361078.7:ENST00000442400.5:ENST00000420234.5:ENST00000429419.6:ENST00000432105.5:ENST00000446940.5:ENST00000424110.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	78	2	3.66565	4.7912	5.91675	4.18031e-4	6.46096e-5	0.0182827	0.00711194
chrX	136952002	136952101	7727890	0	+	0.484848	(0.476,0.515]	chrX	790772	263	INTRON	INTRON	TM9SF5P	ENSG00000234062.9	ENST00000650669.2:ENST00000687469.1:ENST00000431464.6:ENST00000685550.1:ENST00000685929.1:ENST00000424306.5:ENST00000687978.1:ENST00000688713.1:ENST00000693626.1:ENST00000686432.1:ENST00000693698.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	39	2	4.43093	4.791180000000001	5.15143	0.00931369	0.00166579	0.0855292	0.0369207
chr7	138528319	138528418	3435327	0	+	0.414141	(0.408,0.44]	chr7	319985	26	INTRON	INTRON	TRIM24	ENSG00000122779.18	ENST00000343526.9:ENST00000415680.6:ENST00000497516.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	40	2	4.23096	4.790915	5.35087	0.0278028	3.00323e-4	0.123904	0.0155054
chr6	117694580	117694680	2946992	0	+	0.25	[0,0.28]	chr6	277406	4	SS5_PROX	SS5_PROX:INTRON	NUS1	ENSG00000153989.8	ENST00000368494.4	protein_coding	protein_coding	protein_coding	protein_coding	0	42	2	4.5461	4.79089	5.03568	0.0365918	0.00446141	0.138959	0.0610799
chr3	43586758	43586857	1675088	0	-	0.383838	(0.378,0.408]	chr3	171020	59	INTRON	INTRON	ANO10	ENSG00000160746.13	ENST00000292246.8:ENST00000350459.8:ENST00000396091.7:ENST00000414522.6:ENST00000451430.6:ENST00000427171.5:ENST00000428472.5	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.66338	4.790570000000001	4.91776	0.0103469	0.00196368	0.0850389	0.0411469
chr6	30339113	30339211	2840604	0	+	0.387755	(0.378,0.408]	chr6	266790	28	INTRON	INTRON	TRIM39	ENSG00000204599.15	ENST00000396551.8:ENST00000376656.8:ENST00000396548.5:ENST00000376659.9:ENST00000396547.5:ENST00000420746.1	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.66338	4.790570000000001	4.91776	0.0103469	0.00196368	0.0850389	0.0411469
chr9	124744440	124744540	4348947	0	-	0.39	(0.378,0.408]	chr9	399261	107	INTRON	INTRON	NR6A1	ENSG00000148200.17	ENST00000487099.7:ENST00000373584.7:ENST00000416460.6:ENST00000344523.8	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.66338	4.790570000000001	4.91776	0.0103469	0.00196368	0.0850389	0.0411469
chr2	130133162	130133261	863604	0	+	0.20202	[0,0.28]	chr2	96903	30	INTRON	INTRON	MED15P9	ENSG00000223760.4	ENST00000427638.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	42	2	4.63523	4.79042	4.94561	0.0150263	0.0139836	0.10247	0.0994339
chr6	63579831	63579893	2883245	0	+	0.258065	[0,0.28]	chr6	273538	1	SS3_PROX	SS3_PROX:INTRON	PTP4A1:ENSG00000285976	ENSG00000112245.13:ENSG00000285976.2	ENST00000648894.1:ENST00000673199.1:ENST00000672924.1:ENST00000370651.7:ENST00000626021.3:ENST00000673217.1:ENST00000627002.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	42	2	4.63523	4.79042	4.94561	0.0150263	0.0139836	0.10247	0.0994339
chr8	73550852	73550948	3968938	0	-	0.260417	[0,0.28]	chr8	364074	14	UTR3	UTR3:EXON_MRNA:INTRON	STAU2	ENSG00000040341.18	ENST00000524300.6:ENST00000522695.5:ENST00000523558.5:ENST00000521210.5:ENST00000523533.5:ENST00000355780.9:ENST00000519961.5:ENST00000521727.5:ENST00000521451.5	protein_coding	protein_coding	protein_coding	protein_coding	0	42	2	4.63523	4.79042	4.94561	0.0150263	0.0139836	0.10247	0.0994339
chr11	58597655	58597755	4793929	0	+	0.38	(0.378,0.408]	chr11	443838	124	INTRON	INTRON	ZFP91	ENSG00000186660.15	ENST00000316059.7	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.77105	4.7903649999999995	4.80968	0.00679828	0.00330823	0.0711802	0.0527031
chr19	11020770	11020866	7016187	0	+	0.395833	(0.378,0.408]	chr19	697286	3	EXON_MRNA	EXON_MRNA:INTRON	SMARCA4	ENSG00000127616.20	ENST00000644737.1:ENST00000642726.1:ENST00000646484.1:ENST00000643549.1:ENST00000643296.1:ENST00000647230.1:ENST00000642628.1:ENST00000646510.1:ENST00000429416.8:ENST00000344626.10:ENST00000646693.2:ENST00000645460.1:ENST00000541122.6:ENST00000589677.5:ENST00000444061.8:ENST00000590574.6:ENST00000591545.6:ENST00000643995.1:ENST00000644327.1:ENST00000644065.1:ENST00000644963.1:ENST00000643208.1:ENST00000645061.1:ENST00000642350.1:ENST00000644290.1:ENST00000647268.1:ENST00000643857.1:ENST00000644267.1:ENST00000646183.1:ENST00000646746.1:ENST00000643534.1:ENST00000646513.1:ENST00000646593.1:ENST00000645648.1:ENST00000592604.6:ENST00000586122.5:ENST00000587988.5:ENST00000591595.5:ENST00000646236.1:ENST00000585799.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	79	2	3.86951	4.79031	5.71111	2.59738e-4	1.55755e-4	0.0148796	0.0106835
chr15	90392731	90392831	6098570	0	+	0.44	(0.408,0.44]	chr15	580527	9	INTRON	INTRON	IQGAP1	ENSG00000140575.13	ENST00000268182.10:ENST00000633485.1:ENST00000560738.1:ENST00000560418.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	38	2	4.51604	4.789735	5.06343	0.0137419	0.00101725	0.0949306	0.0293497
chr12	57373461	57373561	5338682	0	-	0.47	(0.44,0.476]	chr12	510710	321	INTRON	INTRON	R3HDM2	ENSG00000179912.21	ENST00000402412.6:ENST00000347140.7:ENST00000634871.1:ENST00000448732.1	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	4.43525	4.789515	5.14378	0.00897296	0.00184943	0.0849778	0.0388609
chr1	51876983	51877082	455280	0	-	0.525253	(0.515,0.57]	chr1	54631	142	INTRON	INTRON	NRDC	ENSG00000078618.23	ENST00000354831.11:ENST00000539524.5:ENST00000352171.12:ENST00000491410.1:ENST00000468722.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	136	2	2.84923	4.78943	6.72963	1.68834e-4	2.81483e-8	0.0119215	6.45913e-5
chr3	3174586	3174662	1600710	0	-	0.447368	(0.44,0.476]	chr3	165981	4	SS3_PROX	SS3_PROX:INTRON	CRBN	ENSG00000113851.16	ENST00000639284.1:ENST00000491834.5:ENST00000432408.6:ENST00000231948.9:ENST00000424814.5:ENST00000450014.1:ENST00000498700.5:ENST00000492178.1:ENST00000478353.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	78	2	4.00192	4.789235	5.57655	3.3967e-4	7.32704e-5	0.0170719	0.00714177
chr15	42853819	42853919	6158332	0	-	0.43	(0.408,0.44]	chr15	586277	130	INTRON	INTRON	TTBK2	ENSG00000128881.18	ENST00000267890.11:ENST00000567840.5:ENST00000567274.5:ENST00000564431.5:ENST00000562880.5:ENST00000566931.1	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.62009	4.78913	4.95817	0.00504155	0.00372419	0.0646039	0.0535094
chr2	113923963	113924063	854586	0	+	0.32	(0.28,0.32]	chr2	95910	66	INTRON	INTRON	ACTR3	ENSG00000115091.12	ENST00000443297.5:ENST00000263238.7:ENST00000415792.5:ENST00000446821.5:ENST00000535589.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	91	2	4.05904	4.78886	5.51868	0.00162747	9.15765e-5	0.0367966	0.00800742
chr8	94838262	94838362	3800271	0	+	0.59	(0.57,1]	chr8	352364	4	SS3_PROX	SS3_PROX:INTRON	INTS8	ENSG00000164941.14	ENST00000523731.6:ENST00000524333.5:ENST00000523321.5:ENST00000343161.8:ENST00000523206.5:ENST00000520526.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	29	2	4.7773	4.788705	4.80011	6.07135e-4	5.07088e-4	0.0226059	0.0202328
chr2	169572420	169572495	1261689	0	-	0.32	(0.28,0.32]	chr2	133685	3	SS3_PROX	SS3_PROX:INTRON	FASTKD1	ENSG00000138399.18	ENST00000453153.7:ENST00000453929.6:ENST00000445210.1:ENST00000438035.5	protein_coding	protein_coding	protein_coding	protein_coding	2	119	2	3.36727	4.78868	6.21009	1.9618e-4	1.11538e-4	0.0122528	0.00945289
chr12	112495363	112495463	5230582	0	+	0.33	(0.32,0.35]	chr12	495914	42	INTRON	INTRON	PTPN11	ENSG00000179295.19	ENST00000688597.1:ENST00000692624.1:ENST00000685487.1:ENST00000690210.1:ENST00000639857.2:ENST00000687906.1:ENST00000351677.7:ENST00000635625.1:ENST00000690472.1:ENST00000688701.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	40	2	4.45629	4.78864	5.12099	0.0246089	0.00143632	0.12011	0.0347139
chr3	101513185	101513241	1758578	0	-	0.339286	(0.32,0.35]	chr3	178348	2	UTR5	UTR5:EXON_MRNA	SENP7	ENSG00000138468.16	ENST00000394095.7:ENST00000314261.11:ENST00000394094.6:ENST00000348610.3	protein_coding	protein_coding	protein_coding	protein_coding	0	40	2	4.45629	4.78864	5.12099	0.0246089	0.00143632	0.12011	0.0347139
chr7	111183815	111183915	3620320	0	-	0.33	(0.32,0.35]	chr7	337093	2199	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	40	2	4.45629	4.78864	5.12099	0.0246089	0.00143632	0.12011	0.0347139
chr17	82581940	82582040	6693234	0	+	0.39	(0.378,0.408]	chr17	654652	97	INTRON	INTRON	FOXK2	ENSG00000141568.21	ENST00000473637.6:ENST00000335255.10:ENST00000531030.5:ENST00000526383.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	79	2	3.72397	4.78842	5.85287	3.23378e-4	1.39037e-4	0.0159645	0.0107072
chr6	105058838	105058938	2930870	0	+	0.33	(0.32,0.35]	chr6	276116	320	INTRON	INTRON	LIN28B	ENSG00000187772.8	ENST00000635857.1:ENST00000637759.1:ENST00000345080.5	protein_coding	protein_coding	protein_coding	protein_coding	0	40	2	4.55661	4.78789	5.01917	0.00927858	0.0055659	0.0855292	0.0648867
chr6	158811700	158811799	3253261	0	-	0.525253	(0.515,0.57]	chr6	302380	220	INTRON	INTRON	EZR	ENSG00000092820.19	ENST00000337147.11:ENST00000367075.4:ENST00000476189.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	76	2	4.00925	4.78771	5.56617	7.7342e-5	5.44229e-5	0.00784644	0.00603408
chrX	77764973	77765073	7847258	0	-	0.56	(0.515,0.57]	chrX	800211	474	INTRON	INTRON	ATRX	ENSG00000085224.23	ENST00000373344.11:ENST00000395603.7:ENST00000480283.5:ENST00000624166.3:ENST00000624032.3:ENST00000623321.3:ENST00000624668.3:ENST00000622960.1:ENST00000624193.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	36	2	4.51	4.787295	5.06459	0.00809449	6.03964e-4	0.0766625	0.0223465
chr12	113327733	113327833	5418533	0	-	0.51	(0.476,0.515]	chr12	517896	60	INTRON	INTRON	SLC8B1	ENSG00000089060.12	ENST00000552014.5:ENST00000202831.7:ENST00000680972.1:ENST00000546737.5:ENST00000553238.5:ENST00000551230.1:ENST00000548477.5:ENST00000549181.5:ENST00000549605.5:ENST00000552613.1:ENST00000548186.5:ENST00000549372.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	82	2	3.5704	4.787205	6.00401	8.75056e-4	1.13973e-5	0.0270926	0.00249332
chr18	807120	807220	6940655	0	-	0.52	(0.515,0.57]	chr18	686527	91	INTRON	INTRON	YES1	ENSG00000176105.14	ENST00000584307.5:ENST00000314574.5:ENST00000577611.1:ENST00000581960.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	36	2	4.5963	4.78676	4.97722	0.00370287	0.00168681	0.0561162	0.0370386
chr2	62299837	62299937	790325	0	+	0.53	(0.515,0.57]	chr2	88708	20	INTRON	INTRON	ENSG00000228541	ENSG00000228541.2	ENST00000688476.1:ENST00000689590.1:ENST00000687402.1:ENST00000687773.1	lncRNA	lncRNA	lncRNA	lncRNA	0	36	2	4.5963	4.78676	4.97722	0.00370287	0.00168681	0.0561162	0.0370386
chr7	10741597	10741697	3484196	0	-	0.53	(0.515,0.57]	chr7	325772	1797	INTRON	INTRON	MGC4859	ENSG00000283117.1	ENST00000634803.1	lncRNA	lncRNA	lncRNA	lncRNA	0	36	2	4.5963	4.78676	4.97722	0.00370287	0.00168681	0.0561162	0.0370386
chr12	131713001	131713098	5249105	0	+	0.278351	[0,0.28]	chr12	499138	17	EXON_MRNA	EXON_MRNA:INTRON	SFSWAP	ENSG00000061936.10	ENST00000540469.5:ENST00000261674.9:ENST00000538548.5:ENST00000535399.1:ENST00000535236.5:ENST00000541286.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	107	2	3.71603	4.786725000000001	5.85742	0.0011243	2.14364e-4	0.0306963	0.0128514
chr14	103661715	103661815	5827974	0	+	0.43	(0.408,0.44]	chr14	553070	2	SS3_PROX	SS3_PROX:INTRON	KLC1	ENSG00000126214.22	ENST00000348520.10:ENST00000380038.7:ENST00000334553.11:ENST00000389744.8:ENST00000555836.5:ENST00000347839.10:ENST00000553286.5:ENST00000557575.5:ENST00000452929.6:ENST00000554280.5:ENST00000557450.5:ENST00000554228.5:ENST00000634686.1:ENST00000246489.11:ENST00000445352.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	41	2	4.12187	4.7867	5.45153	0.0354689	1.89064e-4	0.137535	0.0119565
chr1	32164609	32164708	64031	0	+	0.292929	(0.28,0.32]	chr1	8127	9	INTRON	INTRON	KPNA6	ENSG00000025800.14	ENST00000373625.8:ENST00000471599.5:ENST00000446515.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	93	2	4.18091	4.786630000000001	5.39235	0.0024844	4.86075e-5	0.0446195	0.00568992
chr19	23771924	23772024	7042518	0	+	0.51	(0.476,0.515]	chr19	702194	84	INTRON	INTRON	RPSAP58	ENSG00000288920.1	ENST00000471224.5:ENST00000692590.1:ENST00000475499.2:ENST00000686829.1:ENST00000689525.1:ENST00000691397.1:ENST00000688405.1:ENST00000692739.1:ENST00000687994.1:ENST00000484897.4:ENST00000685013.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	85	2	4.03257	4.78659	5.54061	1.30462e-4	9.96835e-5	0.00983066	0.00903184
chr12	57537346	57537427	5339616	0	-	0.358025	(0.35,0.378]	chr12	510873	1	INTRON	INTRON	DCTN2	ENSG00000175203.17	ENST00000676646.1:ENST00000548249.6:ENST00000678505.1:ENST00000552390.6:ENST00000678521.1:ENST00000678322.1:ENST00000543672.6:ENST00000678653.1:ENST00000434715.7:ENST00000550201.5:ENST00000549394.5:ENST00000550750.2:ENST00000551611.6:ENST00000550954.5:ENST00000546670.5:ENST00000546965.5:ENST00000547345.5:ENST00000551400.5:ENST00000547480.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	39	2	4.48184	4.78618	5.09052	0.0191702	0.00123501	0.108861	0.0326215
chr14	30916996	30917094	5856770	0	-	0.357143	(0.35,0.378]	chr14	556453	30	INTRON	INTRON	STRN3	ENSG00000196792.12	ENST00000355683.9:ENST00000357479.10:ENST00000555358.5:ENST00000366206.2:ENST00000556577.1:ENST00000554991.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	39	2	4.48184	4.78618	5.09052	0.0191702	0.00123501	0.108861	0.0326215
chr14	49671957	49672055	5886341	0	-	0.367347	(0.35,0.378]	chr14	558602	20	INTRON	INTRON	POLE2	ENSG00000100479.13	ENST00000216367.10:ENST00000539565.6:ENST00000556584.5:ENST00000554396.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	39	2	4.48184	4.78618	5.09052	0.0191702	0.00123501	0.108861	0.0326215
chr5	181241436	181241491	2783896	0	-	0.4	(0.378,0.408]	chr5	262933	1	EXON_MRNA	EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RACK1	ENSG00000204628.12	ENST00000512805.6:ENST00000511473.5:ENST00000504325.5:ENST00000507756.5:ENST00000502905.5:ENST00000511566.5:ENST00000376817.8:ENST00000508682.5:ENST00000504128.5:ENST00000504726.1:ENST00000511900.5:ENST00000513060.5:ENST00000512968.5:ENST00000510199.5:ENST00000502844.5:ENST00000507000.5:ENST00000514183.5:ENST00000502548.5:ENST00000502890.5:ENST00000503494.5:ENST00000506312.3:ENST00000503081.1:ENST00000515417.5:ENST00000513027.3:ENST00000626067.1:ENST00000505461.5:ENST00000507261.1:ENST00000508963.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	87	2	3.90863	4.786065	5.6635	2.19981e-4	7.77533e-5	0.0135522	0.00735438
chr21	18634280	18634380	7434145	0	-	0.36	(0.35,0.378]	chr21	758112	216	INTRON	INTRON	MIR548XHG	ENSG00000224141.6	ENST00000671206.1:ENST00000437492.6:ENST00000355189.7:ENST00000653218.1:ENST00000656413.1:ENST00000414582.1	lncRNA	lncRNA	lncRNA	lncRNA	0	39	2	4.58537	4.78549	4.98561	0.00703328	0.00474226	0.0754576	0.0600445
chr1	165750502	165750602	575795	0	-	0.32	(0.28,0.32]	chr1	69840	68	INTRON	INTRON	TMCO1	ENSG00000143183.18	ENST00000612311.4:ENST00000367881.11:ENST00000580248.5:ENST00000464650.5:ENST00000476143.7:ENST00000481278.5:ENST00000465705.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	41	2	4.4263	4.784855	5.14341	0.0330296	0.00185891	0.133816	0.039946
chr10	133461357	133461455	4540588	0	+	0.387755	(0.378,0.408]	chr10	419129	8	INTRON	INTRON	SCART1	ENSG00000214279.13	ENST00000482993.6:ENST00000463137.5:ENST00000640237.1:ENST00000488261.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	38	2	4.69169	4.784655000000001	4.87762	0.00553849	0.00432302	0.0648867	0.0599409
chr19	18866805	18866900	7033701	0	+	0.4	(0.378,0.408]	chr19	701087	4	UTR3	UTR3:EXON_MRNA	UPF1	ENSG00000005007.13	ENST00000262803.10:ENST00000599848.5:ENST00000596842.5:ENST00000600689.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	38	2	4.69169	4.784655000000001	4.87762	0.00553849	0.00432302	0.0648867	0.0599409
chr5	28908120	28908220	2330831	0	+	0.38	(0.378,0.408]	chr5	225135	976	INTRON	INTRON	LINC02109	ENSG00000259786.7	ENST00000658190.1	lncRNA	lncRNA	lncRNA	lncRNA	2	105	2	3.49733	4.78451	6.07169	6.46714e-5	4.98726e-5	0.00666922	0.00611327
chr8	26316005	26316105	3716341	0	+	0.55	(0.515,0.57]	chr8	345372	110	INTRON	INTRON	PPP2R2A	ENSG00000221914.11	ENST00000380737.8:ENST00000520329.5:ENST00000518254.5:ENST00000524169.5:ENST00000518397.5:ENST00000522535.5:ENST00000665949.1:ENST00000522150.5:ENST00000523473.5:ENST00000521095.5:ENST00000660435.1:ENST00000523925.5:ENST00000524099.5:ENST00000315985.7:ENST00000519636.5:ENST00000522482.5:ENST00000521557.5:ENST00000519439.5:ENST00000521484.5:ENST00000523964.5:ENST00000667651.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	204	2	2.75088	4.784435	6.81799	7.35212e-6	8.5099e-8	0.00192654	1.25981e-4
chr16	21874163	21874262	6461985	0	-	0.545455	(0.515,0.57]	chr16	623467	80	INTRON	INTRON	NPIPB4	ENSG00000185864.18	ENST00000543449.1:ENST00000538859.1	protein_coding	processed_transcript	protein_coding	processed_transcript	1	71	2	3.71942	4.784215	5.84901	2.61221e-4	3.33916e-5	0.014326	0.00487221
chr14	102007308	102007408	5820690	0	+	0.29	(0.28,0.32]	chr14	552112	2	SS5_PROX	SS5_PROX:INTRON	DYNC1H1	ENSG00000197102.14	ENST00000360184.10:ENST00000684561.1:ENST00000680313.1:ENST00000679720.1:ENST00000680715.1:ENST00000681283.1:ENST00000681822.1:ENST00000679910.1:ENST00000681574.1:ENST00000645039.2:ENST00000645149.2:ENST00000680200.1:ENST00000680120.1:ENST00000644881.2:ENST00000681066.1:ENST00000680423.1:ENST00000681536.1:ENST00000679486.1:ENST00000681010.1:ENST00000679629.1:ENST00000681123.1:ENST00000680874.1:ENST00000680137.1:ENST00000643508.2:ENST00000680808.1:ENST00000681311.1:ENST00000681859.1:ENST00000643684.1:ENST00000645114.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	41	2	4.52233	4.78406	5.04579	0.0129279	0.00714672	0.0990564	0.0723634
chr5	81988765	81988862	2402869	0	+	0.309278	(0.28,0.32]	chr5	232114	7	INTRON	INTRON	ATG10	ENSG00000152348.16	ENST00000282185.8:ENST00000355178.8:ENST00000458350.7:ENST00000513443.5:ENST00000504770.5:ENST00000513634.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	41	2	4.52233	4.78406	5.04579	0.0129279	0.00714672	0.0990564	0.0723634
chr1	89850555	89850655	159821	0	+	0.37	(0.35,0.378]	chr1	17285	35	INTRON	INTRON	LRRC8D	ENSG00000171492.14	ENST00000525774.5:ENST00000337338.9:ENST00000394593.7:ENST00000532201.5:ENST00000414841.1:ENST00000527156.1:ENST00000441269.2	protein_coding	protein_coding	protein_coding	protein_coding	1	88	2	3.40851	4.78377	6.15903	0.00205747	7.41293e-6	0.0409869	0.00193636
chr7	156887570	156887670	3687962	0	-	0.36	(0.35,0.378]	chr7	342096	503	INTRON	INTRON	LMBR1	ENSG00000105983.23	ENST00000353442.10:ENST00000415428.5:ENST00000454132.5:ENST00000434503.5:ENST00000430278.5:ENST00000434278.5:ENST00000444719.5:ENST00000461469.5:ENST00000414218.1:ENST00000434453.1:ENST00000498034.5:ENST00000433968.5:ENST00000485985.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	81	2	3.8746	4.783245	5.69189	3.71413e-4	1.66811e-4	0.0178698	0.0111796
chr1	173891400	173891500	256980	0	+	0.31	(0.28,0.32]	chr1	30716	54	UTR3	UTR3:EXON_MRNA	ZBTB37	ENSG00000185278.16	ENST00000367701.10	protein_coding	protein_coding	protein_coding	protein_coding	0	40	2	4.73474	4.783195	4.83165	0.0162835	0.00527257	0.101453	0.0656295
chr9	86021717	86021800	4149760	0	+	0.301205	(0.28,0.32]	chr9	378524	4	SS3_PROX	SS3_PROX:INTRON	NAA35	ENSG00000135040.16	ENST00000361671.10	protein_coding	protein_coding	protein_coding	protein_coding	0	40	2	4.73474	4.783195	4.83165	0.0162835	0.00527257	0.101453	0.0656295
chr19	35540835	35540933	7172446	0	-	0.540816	(0.515,0.57]	chr19	724801	2	EXON_LNCRNA	EXON_LNCRNA	TMEM147-AS1	ENSG00000236144.9	ENST00000589137.5:ENST00000444728.3:ENST00000590717.2:ENST00000660248.1:ENST00000670097.1:ENST00000667891.1	lncRNA	lncRNA	lncRNA	lncRNA	0	38	2	4.28921	4.7828599999999994	5.27651	0.00990051	5.11033e-4	0.0877296	0.020816
chr16	2446022	2446122	6278091	0	+	0.61	(0.57,1]	chr16	600408	4	SS5_PROX	SS5_PROX:INTRON	CCNF	ENSG00000162063.13	ENST00000293968.11:ENST00000397066.9:ENST00000564236.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	29	2	4.60161	4.782484999999999	4.96336	0.00142229	2.05554e-4	0.0340865	0.0124557
chr8	111039708	111039808	4027599	0	-	0.65	(0.57,1]	chr8	367870	2	SS5_PROX	SS5_PROX:INTRON	LINC01608	ENSG00000253877.6	ENST00000669893.1	lncRNA	lncRNA	lncRNA	lncRNA	0	29	2	4.60161	4.782484999999999	4.96336	0.00142229	2.05554e-4	0.0340865	0.0124557
chr2	241748031	241748129	1056440	0	+	0.571429	(0.57,1]	chr2	112660	28	INTRON	INTRON	D2HGDH	ENSG00000180902.18	ENST00000403782.5:ENST00000436747.5:ENST00000321264.9:ENST00000400769.6:ENST00000437164.1:ENST00000454048.1:ENST00000417686.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	29	2	4.67443	4.782205	4.88998	8.07515e-4	4.016e-4	0.0258804	0.0185763
chr3	60210531	60210631	1711719	0	-	0.37	(0.35,0.378]	chr3	176138	1298	INTRON	INTRON	FHIT	ENSG00000189283.10	ENST00000492590.6:ENST00000476844.5:ENST00000468189.5:ENST00000488467.5	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	4.1971	4.781915	5.3667299999999996	0.0367539	3.99274e-4	0.138959	0.0179401
chr6	80025780	80025877	2907799	0	+	0.350515	(0.35,0.378]	chr6	274740	30	INTRON	INTRON	TTK	ENSG00000112742.10	ENST00000509894.5:ENST00000230510.7:ENST00000369798.7:ENST00000515751.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	41	2	4.1971	4.781915	5.3667299999999996	0.0367539	3.99274e-4	0.138959	0.0179401
chr8	115567122	115567222	4030640	0	-	0.36	(0.35,0.378]	chr8	367954	515	INTRON	INTRON	TRPS1	ENSG00000104447.13	ENST00000395715.8:ENST00000640765.1:ENST00000220888.9:ENST00000519076.5:ENST00000520276.5:ENST00000519674.1	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	4.1971	4.781915	5.3667299999999996	0.0367539	3.99274e-4	0.138959	0.0179401
chr5	54408921	54409021	2354717	0	+	0.33	(0.32,0.35]	chr5	227094	4	SS5_PROX	SS5_PROX:INTRON	LINC01033	ENSG00000249069.8	ENST00000653566.1:ENST00000655801.1:ENST00000654906.1:ENST00000659703.1:ENST00000662351.1:ENST00000523194.7:ENST00000665795.1:ENST00000667992.1:ENST00000657771.1:ENST00000658828.1:ENST00000670528.1:ENST00000657274.1:ENST00000504609.3	lncRNA	lncRNA	lncRNA	lncRNA	1	84	2	3.72276	4.78172	5.84068	3.96144e-4	3.015e-4	0.0178616	0.0160895
chr1	213157165	213157265	311766	0	+	0.3	(0.28,0.32]	chr1	35945	269	INTRON	INTRON	RPS6KC1	ENSG00000136643.12	ENST00000615329.4:ENST00000543354.5:ENST00000614059.4:ENST00000543470.5:ENST00000366960.8:ENST00000366959.4:ENST00000490299.5:ENST00000468069.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	40	2	4.66359	4.781605	4.89962	0.0193496	0.00425206	0.108861	0.0595557
chr7	77806761	77806861	3344029	0	+	0.3	(0.28,0.32]	chr7	311483	74	INTRON	INTRON	PHTF2	ENSG00000006576.17	ENST00000422959.7:ENST00000416283.6:ENST00000307305.12:ENST00000424760.5:ENST00000415251.6:ENST00000275575.11	protein_coding	protein_coding	protein_coding	protein_coding	0	40	2	4.66359	4.781605	4.89962	0.0193496	0.00425206	0.108861	0.0595557
chr7	135500476	135500576	3648865	0	-	0.3	(0.28,0.32]	chr7	339187	617	INTRON	INTRON	CNOT4	ENSG00000080802.20	ENST00000541284.6:ENST00000451834.5:ENST00000423368.6:ENST00000361528.8:ENST00000428680.6:ENST00000315544.6:ENST00000491203.5:ENST00000498534.5:ENST00000465721.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	40	2	4.66359	4.781605	4.89962	0.0193496	0.00425206	0.108861	0.0595557
chr9	131449598	131449697	4217535	0	+	0.30303	(0.28,0.32]	chr9	386766	14	INTRON	INTRON	PRRC2B	ENSG00000288701.1	ENST00000684596.1:ENST00000683519.1:ENST00000682501.1	protein_coding	protein_coding	protein_coding	protein_coding	0	40	2	4.66359	4.781605	4.89962	0.0193496	0.00425206	0.108861	0.0595557
chr17	57529475	57529575	6635493	0	+	0.3	(0.28,0.32]	chr17	648067	4	SS3_PROX	SS3_PROX:INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000674961.1:ENST00000582453.5:ENST00000675656.1:ENST00000322684.7:ENST00000442934.6:ENST00000579180.2:ENST00000579205.5:ENST00000579505.5:ENST00000582772.1:ENST00000674898.1:ENST00000676345.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	40	2	4.76031	4.78143	4.80255	0.0137406	0.00656106	0.0949306	0.0735539
chr6	158629229	158629329	3022303	0	+	0.32	(0.28,0.32]	chr6	281870	1	SS3_PROX	SS3_PROX:INTRON	TMEM181	ENSG00000146433.10	ENST00000367090.4:ENST00000684151.1	protein_coding	protein_coding	protein_coding	protein_coding	0	40	2	4.76031	4.78143	4.80255	0.0137406	0.00656106	0.0949306	0.0735539
chr7	5201950	5202050	3272079	0	+	0.32	(0.28,0.32]	chr7	304097	19	INTRON	INTRON	WIPI2	ENSG00000157954.15	ENST00000401525.7:ENST00000288828.9:ENST00000404704.7:ENST00000466014.5:ENST00000485854.5:ENST00000382384.6:ENST00000496867.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	40	2	4.76031	4.78143	4.80255	0.0137406	0.00656106	0.0949306	0.0735539
chr7	7232206	7232306	3275090	0	+	0.29	(0.28,0.32]	chr7	304579	218	INTRON	INTRON	C1GALT1	ENSG00000106392.11	ENST00000429911.5:ENST00000436587.7:ENST00000476068.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	40	2	4.76031	4.78143	4.80255	0.0137406	0.00656106	0.0949306	0.0735539
chr1	212750895	212750995	634371	0	-	0.41	(0.408,0.44]	chr1	74949	109	INTRON	INTRON	NSL1	ENSG00000117697.15	ENST00000366977.8:ENST00000366978.5:ENST00000366976.3:ENST00000626725.1	protein_coding	protein_coding	protein_coding	protein_coding	4	154	2	2.90058	4.78128	6.66198	1.90873e-4	1.63034e-7	0.0126443	1.85753e-4
chr21	42852905	42852986	7467637	0	-	0.407407	(0.378,0.408]	chr21	760937	2	INTRON	INTRON	WDR4	ENSG00000160193.12	ENST00000330317.6:ENST00000476326.5:ENST00000398208.3:ENST00000492742.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	43	2	4.09379	4.78106	5.46833	0.023912	7.05018e-4	0.129075	0.024224
chr3	49980167	49980267	1423360	0	+	0.49	(0.476,0.515]	chr3	149984	44	INTRON	INTRON	RBM6	ENSG00000004534.15	ENST00000442092.5:ENST00000443081.5:ENST00000419610.5:ENST00000441115.5:ENST00000422955.5:ENST00000454079.5:ENST00000266022.9:ENST00000425608.5:ENST00000434592.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	38	2	4.526	4.780329999999999	5.03466	0.00699701	0.00252065	0.0754576	0.0446195
chr1	145649861	145649961	210416	0	+	0.27	[0,0.28]	chr1	22991	22	INTRON	INTRON	GPR89A	ENSG00000117262.19	ENST00000313835.14:ENST00000460277.5:ENST00000534502.5:ENST00000462900.2:ENST00000478703.5:ENST00000493684.5:ENST00000465185.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	42	2	4.46726	4.780035	5.09281	0.0427997	0.00372534	0.148082	0.0561984
chr2	20305477	20305577	1076321	0	-	0.28	[0,0.28]	chr2	114994	74	INTRON	INTRON	PUM2	ENSG00000055917.16	ENST00000338086.9:ENST00000361078.7:ENST00000440577.5	protein_coding	protein_coding	protein_coding	protein_coding	0	42	2	4.46726	4.780035	5.09281	0.0427997	0.00372534	0.148082	0.0561984
chr2	241325147	241325244	1053707	0	+	0.226804	[0,0.28]	chr2	112214	6	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	SEPTIN2	ENSG00000168385.18	ENST00000391973.6:ENST00000428282.5:ENST00000492978.5:ENST00000360051.7:ENST00000407017.5:ENST00000445030.5:ENST00000428524.5:ENST00000469434.5:ENST00000616972.4:ENST00000495463.5:ENST00000482304.5:ENST00000475474.5:ENST00000401990.5:ENST00000469175.5:ENST00000407971.5:ENST00000461048.5:ENST00000457335.5:ENST00000436795.5:ENST00000494824.5:ENST00000411484.5:ENST00000462147.5:ENST00000434955.5:ENST00000466211.5:ENST00000391971.7:ENST00000402092.6:ENST00000484740.1:ENST00000473479.5:ENST00000464128.5:ENST00000441533.5:ENST00000467971.5:ENST00000425899.5:ENST00000443492.5:ENST00000437066.5:ENST00000429791.5:ENST00000420786.5:ENST00000475823.5:ENST00000449239.5:ENST00000366210.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	42	2	4.46726	4.780035	5.09281	0.0427997	0.00372534	0.148082	0.0561984
chr3	20134143	20134243	1377377	0	+	0.24	[0,0.28]	chr3	145151	62	INTRON	INTRON	KAT2B	ENSG00000114166.8	ENST00000263754.5:ENST00000468111.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	42	2	4.46726	4.780035	5.09281	0.0427997	0.00372534	0.148082	0.0561984
chr1	224400449	224400549	645086	0	-	0.33	(0.32,0.35]	chr1	76240	1	SS5_PROX	SS5_PROX:INTRON	WDR26	ENSG00000162923.17	ENST00000414423.9:ENST00000678917.1:ENST00000651911.2:ENST00000678879.1:ENST00000480676.2:ENST00000486652.5:ENST00000678555.1:ENST00000479727.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	39	2	4.6938	4.780010000000001	4.86622	0.0137794	0.00354075	0.0949306	0.0546236
chr10	63142731	63142830	4436075	0	+	0.343434	(0.32,0.35]	chr10	409213	89	INTRON	INTRON	NRBF2	ENSG00000148572.16	ENST00000435510.6:ENST00000277746.11	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	4.6938	4.780010000000001	4.86622	0.0137794	0.00354075	0.0949306	0.0546236
chr19	38968985	38969085	7181705	0	-	0.34	(0.32,0.35]	chr19	726150	164	INTRON	INTRON	FBXO17	ENSG00000269190.6	ENST00000292852.9:ENST00000596025.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	39	2	4.6938	4.780010000000001	4.86622	0.0137794	0.00354075	0.0949306	0.0546236
chr20	8486440	8486539	7235000	0	+	0.343434	(0.32,0.35]	chr20	734917	1144	INTRON	INTRON	PLCB1	ENSG00000182621.18	ENST00000637919.1:ENST00000625874.2:ENST00000630495.2:ENST00000378641.7:ENST00000338037.11:ENST00000629992.2:ENST00000636319.1:ENST00000626161.1:ENST00000404098.6:ENST00000378637.6:ENST00000636825.1:ENST00000635830.1:ENST00000636784.1:ENST00000626114.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	39	2	4.6938	4.780010000000001	4.86622	0.0137794	0.00354075	0.0949306	0.0546236
chr1	108938405	108938503	518907	0	-	0.326531	(0.32,0.35]	chr1	60877	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	CLCC1	ENSG00000121940.17	ENST00000690509.1:ENST00000687328.1:ENST00000685014.1:ENST00000685540.1:ENST00000686576.1:ENST00000688070.1:ENST00000691513.1:ENST00000686821.1:ENST00000692511.1:ENST00000689479.1:ENST00000687646.1:ENST00000687998.1:ENST00000687226.1:ENST00000693336.1:ENST00000689991.1:ENST00000687591.1:ENST00000691777.1:ENST00000690756.1:ENST00000688778.1:ENST00000685104.1:ENST00000689103.1:ENST00000687734.1:ENST00000686434.1:ENST00000685497.1:ENST00000691342.1:ENST00000686776.1:ENST00000692342.1:ENST00000689351.1:ENST00000692584.1:ENST00000692775.1:ENST00000687134.1:ENST00000690707.1:ENST00000687675.1:ENST00000688298.1:ENST00000675018.1:ENST00000690781.1:ENST00000691556.1:ENST00000689189.1:ENST00000687099.1:ENST00000685791.1:ENST00000687865.1:ENST00000687449.1:ENST00000688285.1:ENST00000686817.1:ENST00000369968.7:ENST00000674992.1:ENST00000675001.1:ENST00000369969.7:ENST00000356970.6:ENST00000692184.1:ENST00000482889.2:ENST00000369976.6:ENST00000688610.1:ENST00000675128.1:ENST00000693089.1:ENST00000675571.1:ENST00000675650.1:ENST00000369970.8:ENST00000674561.2:ENST00000675451.1:ENST00000675654.1:ENST00000675790.1:ENST00000675584.1:ENST00000692795.1:ENST00000691731.1:ENST00000689359.1:ENST00000676392.2:ENST00000676391.2:ENST00000676454.1:ENST00000674849.1:ENST00000675956.1:ENST00000302500.5:ENST00000675508.1:ENST00000688168.1:ENST00000693673.1:ENST00000692404.1:ENST00000686078.1:ENST00000690874.1:ENST00000686961.1:ENST00000692732.1:ENST00000685628.1:ENST00000676306.1:ENST00000348264.6:ENST00000675247.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	39	2	4.76501	4.779915	4.79482	0.0114287	0.00447781	0.0886611	0.0610799
chr12	48087019	48087118	5318256	0	-	0.323232	(0.32,0.35]	chr12	506179	29	INTRON	INTRON	SENP1	ENSG00000079387.14	ENST00000549518.6:ENST00000552189.5:ENST00000448372.5:ENST00000549595.5:ENST00000547886.5:ENST00000551592.5:ENST00000551798.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	39	2	4.76501	4.779915	4.79482	0.0114287	0.00447781	0.0886611	0.0610799
chr3	195414600	195414698	1895633	0	-	0.326531	(0.32,0.35]	chr3	189706	13	INTRON	INTRON	ACAP2	ENSG00000114331.16	ENST00000326793.11:ENST00000635383.1:ENST00000480906.5:ENST00000481463.5:ENST00000439666.1:ENST00000447662.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	39	2	4.76501	4.779915	4.79482	0.0114287	0.00447781	0.0886611	0.0610799
chr5	119355614	119355707	2462470	0	+	0.311828	(0.28,0.32]	chr5	235858	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TNFAIP8	ENSG00000145779.8	ENST00000274456.6:ENST00000388882.5:ENST00000513374.1:ENST00000503646.1:ENST00000504642.1	protein_coding	protein_coding	protein_coding	protein_coding	2	132	2	3.30115	4.7798099999999994	6.25847	4.91009e-4	1.29215e-5	0.0205691	0.00266147
chr17	35635642	35635741	6600031	0	+	0.444444	(0.44,0.476]	chr17	642282	76	INTRON	INTRON	AP2B1	ENSG00000006125.18	ENST00000616784.4:ENST00000621914.4:ENST00000620039.4:ENST00000616681.4:ENST00000621668.4:ENST00000610402.5:ENST00000612035.4:ENST00000614600.4:ENST00000612116.5:ENST00000618940.4:ENST00000619183.1:ENST00000588116.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	38	2	4.43377	4.779450000000001	5.12513	0.0162803	7.96486e-4	0.101453	0.0258804
chr7	831230	831326	3268613	0	+	0.458333	(0.44,0.476]	chr7	303537	2	SS5_PROX	SS5_PROX:INTRON	SUN1	ENSG00000164828.18	ENST00000452783.6:ENST00000389574.7:ENST00000457378.6:ENST00000450538.5:ENST00000427969.5:ENST00000435699.5:ENST00000440380.5:ENST00000439679.5:ENST00000424128.5:ENST00000457598.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	38	2	4.43377	4.779450000000001	5.12513	0.0162803	7.96486e-4	0.101453	0.0258804
chr1	46299890	46299988	442883	0	-	0.265306	[0,0.28]	chr1	53650	1	EXON_LNCRNA	EXON_LNCRNA:INTRON	LRRC41	ENSG00000132128.18	ENST00000617190.5:ENST00000343304.10:ENST00000615587.4:ENST00000498402.2:ENST00000469150.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	42	2	4.55618	4.779405000000001	5.00263	0.0171034	0.013055	0.110899	0.093385
chr12	131714240	131714336	5249118	0	+	0.25	[0,0.28]	chr12	499140	1	EXON_MRNA	EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SFSWAP	ENSG00000061936.10	ENST00000540469.5:ENST00000261674.9:ENST00000538548.5:ENST00000535399.1:ENST00000535236.5:ENST00000541286.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	42	2	4.55618	4.779405000000001	5.00263	0.0171034	0.013055	0.110899	0.093385
chr19	24067023	24067121	7044203	0	+	0.27551	[0,0.28]	chr19	702380	17	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	ZNF254:ENSG00000268362	ENSG00000213096.11:ENSG00000268362.6	ENST00000613065.4:ENST00000654353.1:ENST00000662140.1:ENST00000668169.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	0	42	2	4.55618	4.779405000000001	5.00263	0.0171034	0.013055	0.110899	0.093385
chr2	200976101	200976201	1310921	0	-	0.27	[0,0.28]	chr2	137226	25	UTR3	UTR3:EXON_MRNA	FAM126B	ENSG00000155744.10	ENST00000681958.1:ENST00000418596.7	protein_coding	protein_coding	protein_coding	protein_coding	0	42	2	4.55618	4.779405000000001	5.00263	0.0171034	0.013055	0.110899	0.093385
chr21	6659592	6659666	7425768	0	-	0.256757	[0,0.28]	chr21	757497	2	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	ENSG00000280145	ENSG00000280145.3	ENST00000625185.3:ENST00000623106.3:ENST00000624846.3:ENST00000623313.1:ENST00000624965.1	lncRNA	lncRNA	lncRNA	lncRNA	0	42	2	4.55618	4.779405000000001	5.00263	0.0171034	0.013055	0.110899	0.093385
chr21	44800387	44800486	7468717	0	-	0.252525	[0,0.28]	chr21	761178	5	EXON_MRNA	EXON_MRNA:INTRON	UBE2G2	ENSG00000184787.19	ENST00000345496.7:ENST00000497630.5:ENST00000477954.5:ENST00000491513.5:ENST00000330942.9:ENST00000478200.1:ENST00000497664.5:ENST00000462569.5:ENST00000490450.5:ENST00000496395.2:ENST00000490091.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	42	2	4.55618	4.779405000000001	5.00263	0.0171034	0.013055	0.110899	0.093385
chr8	119807894	119807993	4039814	0	-	0.252525	[0,0.28]	chr8	368390	11	INTRON	INTRON	TAF2	ENSG00000064313.13	ENST00000378164.7:ENST00000685503.1:ENST00000690808.1:ENST00000692707.1:ENST00000685202.1:ENST00000688645.1:ENST00000685684.1:ENST00000689399.1:ENST00000685876.1:ENST00000689341.1:ENST00000691057.1:ENST00000686098.1:ENST00000690922.1:ENST00000685663.1:ENST00000692518.1:ENST00000688037.1:ENST00000691237.1:ENST00000684862.1:ENST00000685755.1:ENST00000691880.1:ENST00000523904.2:ENST00000689919.1:ENST00000685824.1:ENST00000685993.1:ENST00000692829.1:ENST00000692916.1:ENST00000686879.1:ENST00000685235.1:ENST00000690144.1:ENST00000689164.1:ENST00000691847.1:ENST00000688215.1:ENST00000690031.1:ENST00000689867.1:ENST00000689873.1:ENST00000521007.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	42	2	4.55618	4.779405000000001	5.00263	0.0171034	0.013055	0.110899	0.093385
chr15	87421399	87421499	6253761	0	-	0.37	(0.35,0.378]	chr15	596790	942	INTRON	INTRON	ENSG00000259560	ENSG00000259560.2	ENST00000665121.1:ENST00000656130.1	lncRNA	lncRNA	lncRNA	lncRNA	0	40	2	4.40128	4.779255	5.15723	0.0120289	0.00272706	0.0962115	0.0467523
chr16	89509191	89509291	6420344	0	+	0.45	(0.44,0.476]	chr16	616193	2	SS5_PROX	SS5_PROX:INTRON	SPG7	ENSG00000197912.16	ENST00000647079.1:ENST00000646303.1:ENST00000643649.1:ENST00000643307.1:ENST00000566371.6:ENST00000644498.1:ENST00000645897.1:ENST00000643668.1:ENST00000644225.1:ENST00000645818.2:ENST00000645977.1:ENST00000645063.1:ENST00000646263.1:ENST00000643724.1:ENST00000644781.1:ENST00000644901.1:ENST00000645042.1:ENST00000646531.1:ENST00000646930.1:ENST00000569363.2:ENST00000642436.1:ENST00000644210.1:ENST00000564047.2:ENST00000646589.1:ENST00000268704.7:ENST00000646826.1:ENST00000646716.1:ENST00000643345.1:ENST00000341316.6:ENST00000645533.1:ENST00000646958.1:ENST00000642371.1:ENST00000643105.1:ENST00000645354.1:ENST00000643957.1:ENST00000642334.1:ENST00000647227.1:ENST00000562775.2:ENST00000568151.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	83	2	3.84092	4.778765	5.71661	2.66933e-4	5.13947e-5	0.0149989	0.00585477
chr11	78400663	78400763	5000216	0	-	0.47	(0.44,0.476]	chr11	472472	362	INTRON	INTRON	GAB2	ENSG00000033327.13	ENST00000361507.5:ENST00000526030.1:ENST00000528886.5:ENST00000530915.1:ENST00000534823.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	38	2	4.53034	4.778684999999999	5.02703	0.00672609	0.00278015	0.0738715	0.0469265
chr16	20740337	20740433	6459069	0	-	0.46875	(0.44,0.476]	chr16	623048	9	INTRON	INTRON	THUMPD1	ENSG00000066654.14	ENST00000636554.1:ENST00000381337.6:ENST00000396083.7:ENST00000565248.1:ENST00000569768.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	38	2	4.53034	4.778684999999999	5.02703	0.00672609	0.00278015	0.0738715	0.0469265
chr9	37199242	37199342	4118449	0	+	0.28	[0,0.28]	chr9	375389	123	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000461038.5:ENST00000488607.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	129	2	3.0385	4.7786	6.5187	0.00116412	8.0918e-5	0.0314524	0.00806221
chr1	151893319	151893418	555496	0	-	0.393939	(0.378,0.408]	chr1	65713	20	INTRON	INTRON	THEM4	ENSG00000159445.13	ENST00000368814.8:ENST00000471464.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	79	2	4.0017	4.7777899999999995	5.55388	5.01023e-4	7.73853e-5	0.0206993	0.00735438
chr4	159123809	159123909	2073707	0	+	0.39	(0.378,0.408]	chr4	205172	192	INTRON	INTRON	RAPGEF2	ENSG00000109756.10	ENST00000644474.1:ENST00000691494.1:ENST00000505478.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	79	2	4.0017	4.7777899999999995	5.55388	5.01023e-4	7.73853e-5	0.0206993	0.00735438
chr10	998006	998105	4379093	0	+	0.272727	[0,0.28]	chr10	403833	3	INTRON	INTRON	GTPBP4	ENSG00000107937.19	ENST00000360803.9:ENST00000491635.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	95	2	3.54621	4.77714	6.00807	0.00124865	6.0063e-4	0.0328543	0.0226059
chr7	73204956	73205030	3331532	0	+	0.378378	(0.378,0.408]	chr7	309852	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GTF2IP4	ENSG00000233369.7	ENST00000544802.5:ENST00000453092.3	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript:transcribed_processed_pseudogene	0	40	2	4.21563	4.77696	5.33829	0.0315429	3.59275e-4	0.13151	0.0169207
chr17	65041501	65041601	6818269	0	-	0.3	(0.28,0.32]	chr17	674129	228	INTRON	INTRON	GNA13	ENSG00000120063.10	ENST00000439174.7:ENST00000541118.1	protein_coding	protein_coding	protein_coding	protein_coding	0	40	2	4.58875	4.776645	4.96454	0.0230574	0.00344078	0.118056	0.0539802
chr5	105297462	105297562	2695401	0	-	0.29	(0.28,0.32]	chr5	254248	512	INTRON	INTRON	ENSG00000251574	ENSG00000251574.8	ENST00000503650.1	lncRNA	lncRNA	lncRNA	lncRNA	0	40	2	4.58875	4.776645	4.96454	0.0230574	0.00344078	0.118056	0.0539802
chr6	110724629	110724729	3189547	0	-	0.31	(0.28,0.32]	chr6	297114	537	INTRON	INTRON	CDK19	ENSG00000155111.15	ENST00000323817.7:ENST00000368911.8:ENST00000413605.6:ENST00000457688.5:ENST00000463016.1:ENST00000460913.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	40	2	4.58875	4.776645	4.96454	0.0230574	0.00344078	0.118056	0.0539802
chrX	155579951	155580051	7918167	0	-	0.32	(0.28,0.32]	chrX	806317	343	INTRON	INTRON	TMLHE	ENSG00000185973.12	ENST00000334398.8:ENST00000675642.1:ENST00000369439.4	protein_coding	protein_coding	protein_coding	protein_coding	0	40	2	4.58875	4.776645	4.96454	0.0230574	0.00344078	0.118056	0.0539802
chr20	21316319	21316418	7248267	0	+	0.323232	(0.32,0.35]	chr20	735885	125	INTRON	INTRON	XRN2	ENSG00000088930.8	ENST00000377191.5	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	4.61889	4.7765699999999995	4.93425	0.0166646	0.00281048	0.102621	0.0488779
chr10	130167964	130168060	4536651	0	+	0.427083	(0.408,0.44]	chr10	418810	6	INTRON	INTRON	GLRX3	ENSG00000108010.12	ENST00000331244.10:ENST00000481034.1:ENST00000368644.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	38	2	4.42713	4.7764050000000005	5.12568	0.0173083	7.90919e-4	0.104099	0.0258324
chr5	131759865	131759965	2720373	0	-	0.41	(0.408,0.44]	chr5	255730	148	INTRON	INTRON	FNIP1	ENSG00000217128.13	ENST00000510461.6:ENST00000307954.12:ENST00000307968.11:ENST00000511848.1	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.42713	4.7764050000000005	5.12568	0.0173083	7.90919e-4	0.104099	0.0258324
chr12	22652240	22652340	5095017	0	+	0.31	(0.28,0.32]	chr12	481236	58	INTRON	INTRON	ETNK1	ENSG00000139163.16	ENST00000671733.1:ENST00000266517.9:ENST00000538218.2:ENST00000673496.1:ENST00000673406.1:ENST00000672995.1:ENST00000539974.1:ENST00000673188.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	40	2	4.68527	4.7762899999999995	4.86731	0.0116253	0.00819419	0.0889104	0.0810802
chr17	57257769	57257861	6632752	0	+	0.293478	(0.28,0.32]	chr17	647975	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000581776.5:ENST00000581523.5:ENST00000674961.1:ENST00000582453.5:ENST00000675656.1:ENST00000322684.7:ENST00000579590.5:ENST00000579531.5:ENST00000676073.1:ENST00000676105.1:ENST00000584476.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	40	2	4.68527	4.7762899999999995	4.86731	0.0116253	0.00819419	0.0889104	0.0810802
chr2	96337335	96337434	830216	0	+	0.313131	(0.28,0.32]	chr2	92795	11	INTRON	INTRON	NCAPH	ENSG00000121152.10	ENST00000240423.9:ENST00000427946.5:ENST00000435975.5:ENST00000477409.1:ENST00000456906.5:ENST00000455200.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	40	2	4.68527	4.7762899999999995	4.86731	0.0116253	0.00819419	0.0889104	0.0810802
chr4	163127615	163127710	2280908	0	-	0.294737	(0.28,0.32]	chr4	221554	1	INTRON	INTRON	NAF1	ENSG00000145414.9	ENST00000509434.5:ENST00000422287.6	protein_coding	protein_coding	protein_coding	protein_coding	0	40	2	4.68527	4.7762899999999995	4.86731	0.0116253	0.00819419	0.0889104	0.0810802
chr7	7683566	7683665	3276134	0	+	0.323232	(0.32,0.35]	chr7	304695	70	INTRON	INTRON	UMAD1	ENSG00000219545.12	ENST00000493246.5:ENST00000682710.1:ENST00000463725.5:ENST00000638342.1:ENST00000636849.1:ENST00000639343.1:ENST00000639110.1:ENST00000471760.5:ENST00000482067.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	39	2	4.7197	4.776285	4.83287	0.0095071	0.00568521	0.0817766	0.0678837
chr1	185061079	185061179	275714	0	+	0.49	(0.476,0.515]	chr1	32263	144	INTRON	INTRON	RNF2	ENSG00000121481.11	ENST00000367509.8:ENST00000498201.1:ENST00000367510.8:ENST00000453650.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	167	2	4.5572	4.776255	4.99531	5.47163e-6	1.2861e-7	0.0017411	1.62193e-4
chr10	50500130	50500230	4619451	0	-	0.42	(0.408,0.44]	chr10	425446	328	INTRON	INTRON	SGMS1	ENSG00000198964.14	ENST00000429490.5:ENST00000361781.7:ENST00000619438.4:ENST00000609445.5:ENST00000608287.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	38	2	4.53088	4.77558	5.02028	0.00669275	0.00303216	0.0738715	0.0493883
chr19	32642739	32642833	7169289	0	-	0.43617	(0.408,0.44]	chr19	724438	2	SS5_PROX	SS5_PROX:INTRON	ANKRD27	ENSG00000105186.16	ENST00000306065.9:ENST00000591100.6:ENST00000587352.5	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.53088	4.77558	5.02028	0.00669275	0.00303216	0.0738715	0.0493883
chr6	109166354	109166454	2936122	0	+	0.39	(0.378,0.408]	chr6	276442	35	UTR3	UTR3:EXON_MRNA	CEP57L1	ENSG00000183137.15	ENST00000517392.6	protein_coding	protein_coding	protein_coding	protein_coding	1	85	2	3.76774	4.77546	5.78318	4.21442e-4	4.21479e-5	0.0189827	0.0052571
chr10	1165411	1165511	4380238	0	+	0.38	(0.378,0.408]	chr10	404012	4	INTRON	INTRON	LINC00200	ENSG00000229205.5	ENST00000652683.1:ENST00000655745.1:ENST00000666348.1	lncRNA	lncRNA	lncRNA	lncRNA	0	38	2	4.60771	4.775105	4.9425	0.00567576	0.00452675	0.0678837	0.0595107
chr18	55907940	55908040	6910174	0	+	0.4	(0.378,0.408]	chr18	684213	141	INTRON	INTRON	ENSG00000267327	ENSG00000267327.2	ENST00000589440.1	lncRNA	lncRNA	lncRNA	lncRNA	0	38	2	4.60771	4.775105	4.9425	0.00567576	0.00452675	0.0678837	0.0595107
chr3	10304532	10304602	1613144	0	-	0.385714	(0.378,0.408]	chr3	166588	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SEC13	ENSG00000157020.18	ENST00000492602.5:ENST00000350697.8:ENST00000337354.8:ENST00000397109.7:ENST00000479868.6:ENST00000397117.5:ENST00000383801.6:ENST00000477547.6:ENST00000476597.1:ENST00000490283.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	38	2	4.60771	4.775105	4.9425	0.00567576	0.00452675	0.0678837	0.0595107
chr2	17749315	17749414	1074062	0	-	0.323232	(0.32,0.35]	chr2	114655	30	INTRON	INTRON	SMC6	ENSG00000163029.16	ENST00000351948.8:ENST00000448223.7:ENST00000402989.5:ENST00000446852.5:ENST00000621152.4:ENST00000428868.1	protein_coding	protein_coding	protein_coding	protein_coding	1	91	2	3.63897	4.77472	5.91047	9.34231e-4	4.45216e-5	0.0280484	0.00541025
chr6	15057677	15057777	3063512	0	-	0.56	(0.515,0.57]	chr6	284666	41	INTRON	INTRON	ENSG00000234261	ENSG00000234261.5	ENST00000653525.1:ENST00000656468.1:ENST00000656344.1:ENST00000437648.1:ENST00000656807.1	lncRNA	lncRNA	lncRNA	lncRNA	1	71	2	3.62821	4.774075	5.91994	4.12866e-4	2.28427e-5	0.0181365	0.00389868
chr1	22083180	22083278	42518	0	+	0.265306	[0,0.28]	chr1	5116	10	INTRON	INTRON	ENSG00000289694:CDC42	ENSG00000289694.1:ENSG00000070831.18	ENST00000695855.1:ENST00000695856.1:ENST00000344548.8:ENST00000400259.5:ENST00000667384.2:ENST00000411827.2:ENST00000695858.1:ENST00000695857.1:ENST00000315554.14:ENST00000695859.1:ENST00000498236.1:ENST00000656825.1:ENST00000651171.1:ENST00000652582.1:ENST00000695860.1:ENST00000695796.1:ENST00000695797.1:ENST00000662562.2:ENST00000695798.1:ENST00000695799.1:ENST00000695800.1:ENST00000695801.1:ENST00000695802.1:ENST00000695861.1:ENST00000695862.1:ENST00000695863.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	43	2	4.29536	4.773569999999999	5.25178	0.0590175	0.0022031	0.167915	0.0435144
chr4	55872656	55872755	1961381	0	+	0.232323	[0,0.28]	chr4	196637	3	INTRON	INTRON	EXOC1	ENSG00000090989.18	ENST00000381295.7:ENST00000346134.11:ENST00000349598.6	protein_coding	protein_coding	protein_coding	protein_coding	0	43	2	4.29536	4.773569999999999	5.25178	0.0590175	0.0022031	0.167915	0.0435144
chr1	89906021	89906121	160376	0	+	0.49	(0.476,0.515]	chr1	17285	590	INTRON	INTRON	LRRC8D	ENSG00000171492.14	ENST00000525774.5:ENST00000337338.9:ENST00000394593.7:ENST00000532201.5:ENST00000414841.1:ENST00000527156.1:ENST00000441269.2	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	4.6932	4.7734950000000005	4.85379	0.00753088	0.00234214	0.074841	0.0442989
chr16	24121540	24121640	6326626	0	+	0.49	(0.476,0.515]	chr16	605747	81	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	4.6932	4.7734950000000005	4.85379	0.00753088	0.00234214	0.074841	0.0442989
chr20	3943884	3943983	7308685	0	-	0.494949	(0.476,0.515]	chr20	744273	85	INTRON	INTRON	RNF24	ENSG00000101236.17	ENST00000336095.10:ENST00000358395.11:ENST00000432261.6:ENST00000545616.2	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	4.6932	4.7734950000000005	4.85379	0.00753088	0.00234214	0.074841	0.0442989
chr1	151871159	151871257	555265	0	-	0.489796	(0.476,0.515]	chr1	65686	4	UTR3	UTR3:EXON_MRNA	THEM4	ENSG00000159445.13	ENST00000368814.8	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	4.76827	4.773415	4.77856	0.00600704	0.00305743	0.0674604	0.0509893
chr11	70369927	70370027	4821447	0	+	0.5	(0.476,0.515]	chr11	449547	19	INTRON	INTRON	PPFIA1	ENSG00000131626.19	ENST00000253925.12:ENST00000389547.7:ENST00000532504.5:ENST00000648755.1:ENST00000644155.1:ENST00000526262.5:ENST00000638133.1:ENST00000530548.5:ENST00000525922.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	37	2	4.76827	4.773415	4.77856	0.00600704	0.00305743	0.0674604	0.0509893
chr14	68594603	68594702	5773141	0	+	0.494949	(0.476,0.515]	chr14	547136	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	RAD51B	ENSG00000182185.19	ENST00000487861.5:ENST00000487270.5:ENST00000488612.5:ENST00000553595.5:ENST00000554244.5:ENST00000478014.5:ENST00000556251.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	37	2	4.76827	4.773415	4.77856	0.00600704	0.00305743	0.0674604	0.0509893
chr18	790069	790168	6940483	0	-	0.484848	(0.476,0.515]	chr18	686525	17	INTRON	INTRON	YES1	ENSG00000176105.14	ENST00000584307.5:ENST00000314574.5:ENST00000577611.1:ENST00000581960.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	37	2	4.76827	4.773415	4.77856	0.00600704	0.00305743	0.0674604	0.0509893
chr3	49768595	49768695	1694704	0	-	0.5	(0.476,0.515]	chr3	173818	198	INTRON	INTRON	IP6K1	ENSG00000176095.12	ENST00000321599.9:ENST00000395238.5:ENST00000613416.4:ENST00000468463.5:ENST00000460540.1:ENST00000498149.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	37	2	4.76827	4.773415	4.77856	0.00600704	0.00305743	0.0674604	0.0509893
chr12	132797660	132797749	5449896	0	-	0.460674	(0.44,0.476]	chr12	522055	6	INTRON	INTRON	GOLGA3	ENSG00000090615.16	ENST00000204726.9:ENST00000450791.8:ENST00000693666.1:ENST00000688114.1:ENST00000687190.1:ENST00000690511.1:ENST00000685283.1:ENST00000691696.1:ENST00000691636.1:ENST00000690897.1:ENST00000690465.1:ENST00000456883.7:ENST00000692253.1:ENST00000687502.1:ENST00000688772.1:ENST00000687479.1:ENST00000690709.1:ENST00000545875.4:ENST00000688251.1:ENST00000690573.1:ENST00000685195.1:ENST00000686425.1:ENST00000693437.1:ENST00000692831.1:ENST00000688068.1:ENST00000692951.1:ENST00000689441.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	77	2	3.96926	4.772905	5.57655	3.3967e-4	8.75142e-5	0.0170719	0.00785215
chr3	180926551	180926650	1568744	0	+	0.323232	(0.32,0.35]	chr3	162365	106	INTRON	INTRON	FXR1	ENSG00000114416.18	ENST00000469882.5:ENST00000484790.5:ENST00000465551.5:ENST00000305586.11:ENST00000475315.5:ENST00000491674.1:ENST00000357559.9:ENST00000468861.5:ENST00000491062.5:ENST00000479176.5:ENST00000445140.6:ENST00000472339.5:ENST00000484958.5:ENST00000480918.5:ENST00000484042.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	40	2	4.36755	4.772885	5.17822	0.0300552	0.00115625	0.129138	0.0313436
chr5	60682070	60682170	2627333	0	-	0.34	(0.32,0.35]	chr5	249590	341	INTRON	INTRON	DEPDC1B	ENSG00000035499.13	ENST00000265036.10:ENST00000453022.6:ENST00000512078.5:ENST00000512452.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	40	2	4.36755	4.772885	5.17822	0.0300552	0.00115625	0.129138	0.0313436
chr22	29273237	29273337	7496111	0	+	0.34	(0.32,0.35]	chr22	764804	1	SS3_PROX	SS3_PROX:INTRON	EWSR1	ENSG00000182944.18	ENST00000629659.2:ENST00000332050.10:ENST00000444626.5:ENST00000447973.5:ENST00000436425.5:ENST00000397938.7:ENST00000406548.5:ENST00000485037.5:ENST00000437155.6:ENST00000415761.5:ENST00000331029.11:ENST00000483415.5:ENST00000414183.6:ENST00000333395.10:ENST00000332035.10:ENST00000455726.5:ENST00000493426.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	154	2	3.01123	4.772595	6.53396	8.14476e-5	1.24644e-5	0.00755207	0.00280854
chr10	72618119	72618219	4646852	0	-	0.45	(0.44,0.476]	chr10	427462	510	INTRON	INTRON	MICU1	ENSG00000107745.20	ENST00000361114.10:ENST00000642044.1:ENST00000635239.1:ENST00000604238.2:ENST00000603011.5:ENST00000604025.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	37	2	4.68564	4.771905	4.85817	0.00816201	0.00223254	0.0766625	0.0435144
chr11	74990458	74990557	4830436	0	+	0.474747	(0.44,0.476]	chr11	450709	4	INTRON	INTRON	NEU3	ENSG00000162139.10	ENST00000531509.5:ENST00000529024.1:ENST00000294064.9:ENST00000532963.1:ENST00000531619.1:ENST00000534628.1	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	4.68564	4.771905	4.85817	0.00816201	0.00223254	0.0766625	0.0435144
chr3	195983421	195983516	1896900	0	-	0.463158	(0.44,0.476]	chr3	189856	7	INTRON	INTRON	SDHAP1	ENSG00000185485.14	ENST00000427841.5:ENST00000440850.5:ENST00000413474.5:ENST00000435731.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	37	2	4.68564	4.771905	4.85817	0.00816201	0.00223254	0.0766625	0.0435144
chr1	150855366	150855465	552775	0	-	0.444444	(0.44,0.476]	chr1	65018	17	INTRON	INTRON	ARNT	ENSG00000143437.21	ENST00000358595.10:ENST00000471844.6:ENST00000354396.6:ENST00000515192.5:ENST00000505755.5:ENST00000497108.6:ENST00000505979.5:ENST00000504358.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	37	2	4.76068	4.7718050000000005	4.78293	0.00653414	0.00292033	0.0699952	0.0494641
chr13	50250774	50250874	5492674	0	+	0.45	(0.44,0.476]	chr13	526063	20	INTRON	INTRON	DLEU1	ENSG00000176124.15	ENST00000467721.5:ENST00000468522.5:ENST00000490577.5:ENST00000491341.5:ENST00000491615.5:ENST00000463474.7:ENST00000468168.5:ENST00000476738.5:ENST00000461527.7:ENST00000486895.5:ENST00000485007.5:ENST00000475913.5:ENST00000484529.5:ENST00000473075.3:ENST00000483444.5	lncRNA	lncRNA	lncRNA	lncRNA	0	37	2	4.76068	4.7718050000000005	4.78293	0.00653414	0.00292033	0.0699952	0.0494641
chr14	49824092	49824190	5886962	0	-	0.44898	(0.44,0.476]	chr14	558728	33	INTRON	INTRON	NEMF	ENSG00000165525.18	ENST00000298310.10:ENST00000556925.5:ENST00000555970.5:ENST00000555411.1:ENST00000557380.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	37	2	4.76068	4.7718050000000005	4.78293	0.00653414	0.00292033	0.0699952	0.0494641
chr2	135855451	135855548	1233671	0	-	0.463918	(0.44,0.476]	chr2	131287	22	INTRON	INTRON	MCM6	ENSG00000076003.5	ENST00000264156.3:ENST00000492091.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	37	2	4.76068	4.7718050000000005	4.78293	0.00653414	0.00292033	0.0699952	0.0494641
chr2	178616403	178616491	931909	0	+	0.443182	(0.44,0.476]	chr2	102421	7	INTRON	INTRON	TTN-AS1	ENSG00000237298.10	ENST00000630096.2:ENST00000659121.1:ENST00000456053.5:ENST00000590773.6:ENST00000592600.6:ENST00000592630.5:ENST00000592750.5:ENST00000653807.1:ENST00000585451.5:ENST00000657023.1:ENST00000626117.2:ENST00000590807.5:ENST00000626954.2:ENST00000625480.2:ENST00000628826.2:ENST00000628296.2:ENST00000626138.2:ENST00000625536.2:ENST00000589907.5:ENST00000589830.1:ENST00000671355.1:ENST00000589487.5:ENST00000627527.1	lncRNA	lncRNA	lncRNA	lncRNA	0	37	2	4.76068	4.7718050000000005	4.78293	0.00653414	0.00292033	0.0699952	0.0494641
chr1	212308195	212308294	308304	0	+	0.363636	(0.35,0.378]	chr1	35566	9	INTRON	INTRON	PPP2R5A	ENSG00000066027.12	ENST00000261461.7:ENST00000537030.3:ENST00000498129.6:ENST00000479259.1:ENST00000498123.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	38	2	4.71953	4.771649999999999	4.82377	0.0103314	0.00325499	0.0850389	0.0524329
chr2	214807111	214807211	1326163	0	-	0.36	(0.35,0.378]	chr2	138639	96	INTRON	INTRON	BARD1	ENSG00000138376.11	ENST00000260947.9:ENST00000617164.5:ENST00000619009.5:ENST00000613374.5:ENST00000613706.5:ENST00000421162.2:ENST00000613192.2:ENST00000620057.4:ENST00000455743.5:ENST00000471787.1:ENST00000479904.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	38	2	4.71953	4.771649999999999	4.82377	0.0103314	0.00325499	0.0850389	0.0524329
chr22	40223922	40224022	7518644	0	+	0.37	(0.35,0.378]	chr22	768108	454	INTRON	INTRON	TNRC6B	ENSG00000100354.21	ENST00000301923.13:ENST00000402203.5:ENST00000454349.7:ENST00000489500.1:ENST00000335727.13	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	38	2	4.71953	4.771649999999999	4.82377	0.0103314	0.00325499	0.0850389	0.0524329
chr6	159784266	159784366	3254644	0	-	0.37	(0.35,0.378]	chr6	302527	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TCP1	ENSG00000120438.12	ENST00000321394.12:ENST00000544255.5:ENST00000420894.6:ENST00000392168.6:ENST00000539756.1:ENST00000536807.1:ENST00000543532.5:ENST00000538530.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	38	2	4.71953	4.771649999999999	4.82377	0.0103314	0.00325499	0.0850389	0.0524329
chr20	47320360	47320460	7349148	0	-	0.57	(0.515,0.57]	chr20	749346	14	INTRON	INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000435836.5:ENST00000446894.5:ENST00000441977.1	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.50102	4.771635	5.04225	0.00510768	0.00131841	0.0646039	0.0331539
chr2	128099928	128100026	862557	0	+	0.316327	(0.28,0.32]	chr2	96661	20	INTRON	INTRON	UGGT1	ENSG00000136731.13	ENST00000259253.11:ENST00000430075.5:ENST00000438277.5:ENST00000376723.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	42	2	4.33863	4.771615000000001	5.2046	0.0207276	0.00448664	0.122348	0.0593175
chr1	243163157	243163248	667779	0	-	0.362637	(0.35,0.378]	chr1	79245	1	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	CEP170	ENSG00000143702.16	ENST00000366544.5:ENST00000366543.5:ENST00000366542.6:ENST00000336415.8:ENST00000490813.5:ENST00000413359.6:ENST00000464936.5:ENST00000492145.1	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	4.39303	4.771595	5.15016	0.0237246	9.78549e-4	0.118716	0.0287765
chr18	13012373	13012472	6876783	0	+	0.30303	(0.28,0.32]	chr18	681363	34	INTRON	INTRON	CEP192	ENSG00000101639.19	ENST00000325971.12:ENST00000506447.5:ENST00000589596.5:ENST00000513432.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	43	2	4.14214	4.77088	5.39962	0.0579756	7.06751e-4	0.167723	0.0241881
chr2	37152039	37152139	1096361	0	-	0.37	(0.35,0.378]	chr2	117534	24	INTRON	INTRON	EIF2AK2	ENSG00000055332.19	ENST00000681329.1:ENST00000681507.1:ENST00000681463.1:ENST00000679507.1:ENST00000233057.9:ENST00000679979.1:ENST00000680273.1:ENST00000395127.6:ENST00000411537.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	39	2	4.49626	4.77069	5.04512	0.00917582	0.00393262	0.0855292	0.0548259
chr1	114750607	114750707	528562	0	-	0.26	[0,0.28]	chr1	62354	4	SS3_PROX	SS3_PROX:INTRON	CSDE1	ENSG00000009307.17	ENST00000339438.10:ENST00000610726.5:ENST00000692719.1:ENST00000358528.9:ENST00000688211.1:ENST00000438362.7:ENST00000689217.1:ENST00000689989.1:ENST00000686025.1:ENST00000686781.1:ENST00000686123.1:ENST00000684913.1:ENST00000686235.1:ENST00000693467.1:ENST00000689732.1:ENST00000693644.1:ENST00000687759.1:ENST00000692044.1:ENST00000689885.1:ENST00000691403.1:ENST00000692629.1:ENST00000690013.1:ENST00000690420.1:ENST00000692950.1:ENST00000686667.1:ENST00000691032.1:ENST00000685676.1:ENST00000529046.6:ENST00000692672.1:ENST00000691377.1:ENST00000688611.1:ENST00000690207.1:ENST00000693311.1:ENST00000689510.1:ENST00000686581.1:ENST00000689727.1:ENST00000690784.1:ENST00000483030.2:ENST00000687548.1:ENST00000261443.9:ENST00000530886.5:ENST00000369530.5:ENST00000534699.5:ENST00000524652.2:ENST00000525132.1:ENST00000525878.5:ENST00000525970.5:ENST00000533818.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	41	2	4.69191	4.77061	4.84931	0.0269474	0.00779241	0.123442	0.0787356
chr12	45906164	45906262	5124506	0	+	0.265306	[0,0.28]	chr12	483408	12	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ARID2	ENSG00000189079.17	ENST00000334344.11:ENST00000479608.5:ENST00000444670.5:ENST00000457135.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	41	2	4.69191	4.77061	4.84931	0.0269474	0.00779241	0.123442	0.0787356
chr19	52091177	52091275	7205823	0	-	0.265306	[0,0.28]	chr19	731310	18	INTRON	INTRON	ZNF432:ZNF841	ENSG00000256087.7:ENSG00000197608.12	ENST00000598446.1:ENST00000594440.6:ENST00000426391.6:ENST00000594295.5:ENST00000599430.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	41	2	4.69191	4.77061	4.84931	0.0269474	0.00779241	0.123442	0.0787356
chr2	95938228	95938328	1179188	0	-	0.28	[0,0.28]	chr2	126007	22	INTRON	INTRON	ANKRD36C	ENSG00000174501.15	ENST00000295246.7:ENST00000456556.5:ENST00000534304.5:ENST00000528268.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	41	2	4.69191	4.77061	4.84931	0.0269474	0.00779241	0.123442	0.0787356
chr4	139381543	139381643	2050513	0	+	0.21	[0,0.28]	chr4	203388	23	INTRON	INTRON	NAA15	ENSG00000164134.13	ENST00000296543.10:ENST00000398947.1	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	4.69191	4.77061	4.84931	0.0269474	0.00779241	0.123442	0.0787356
chr6	159789041	159789128	3254701	0	-	0.678161	(0.57,1]	chr6	302553	3	EXON_LNCRNA	EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TCP1	ENSG00000120438.12	ENST00000321394.12:ENST00000544255.5:ENST00000420894.6:ENST00000392168.6:ENST00000539756.1:ENST00000543532.5:ENST00000538530.5:ENST00000538128.5:ENST00000543517.5:ENST00000537390.5:ENST00000536607.1:ENST00000546023.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	159	2	4.72309	4.77061	4.81813	1.3151e-9	3.59739e-10	6.38906e-6	3.53307e-6
chr7	90388253	90388353	3347686	0	+	0.24	[0,0.28]	chr7	312031	32	UTR3	UTR3:EXON_MRNA:INTRON	GTPBP10:CLDN12	ENSG00000105793.16:ENSG00000157224.16	ENST00000380058.7:ENST00000222511.11:ENST00000416322.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	41	2	4.69191	4.77061	4.84931	0.0269474	0.00779241	0.123442	0.0787356
chr1	63453614	63453689	470982	0	-	0.213333	[0,0.28]	chr1	56958	1	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	ITGB3BP	ENSG00000142856.17	ENST00000271002.15:ENST00000489099.5:ENST00000371092.7:ENST00000461681.5:ENST00000463803.5:ENST00000476508.5:ENST00000460394.5:ENST00000462285.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	41	2	4.75964	4.77053	4.78142	0.0232081	0.00943974	0.118148	0.0861183
chr16	14947162	14947260	6305067	0	+	0.255102	[0,0.28]	chr16	603227	8	INTRON	INTRON	NPIPA1	ENSG00000183426.17	ENST00000472413.5:ENST00000541836.5:ENST00000328085.10:ENST00000424549.7:ENST00000534720.1:ENST00000537062.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	41	2	4.75964	4.77053	4.78142	0.0232081	0.00943974	0.118148	0.0861183
chr1	20779212	20779311	389785	0	-	0.353535	(0.35,0.378]	chr1	46569	21	INTRON	INTRON	HP1BP3	ENSG00000127483.19	ENST00000438032.6:ENST00000312239.10:ENST00000424732.5:ENST00000417710.5:ENST00000487117.1:ENST00000375000.5:ENST00000437575.5:ENST00000419490.5:ENST00000414993.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	38	2	4.64457	4.7699	4.89523	0.012652	0.00253947	0.0926667	0.0465056
chr2	38369747	38369847	1099273	0	-	0.36	(0.35,0.378]	chr2	117880	103	INTRON	INTRON	ATL2	ENSG00000119787.14	ENST00000378954.9:ENST00000406122.5:ENST00000405384.6:ENST00000402054.5:ENST00000419554.6:ENST00000651368.1:ENST00000452935.6:ENST00000449130.5:ENST00000443098.5:ENST00000456736.5:ENST00000472097.1:ENST00000451483.1:ENST00000416222.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	38	2	4.64457	4.7699	4.89523	0.012652	0.00253947	0.0926667	0.0465056
chrX	123637742	123637842	7878083	0	-	0.36	(0.35,0.378]	chrX	802496	3	SS5_PROX	SS5_PROX:INTRON	THOC2	ENSG00000125676.20	ENST00000245838.13:ENST00000355725.8:ENST00000491737.5	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.64457	4.7699	4.89523	0.012652	0.00253947	0.0926667	0.0465056
chr1	153677	153776	352844	0	-	0.363636	(0.35,0.378]	chr1	40807	41	INTRON	INTRON	ENSG00000241860	ENSG00000241860.7	ENST00000466557.6	lncRNA	lncRNA	lncRNA	lncRNA	0	38	2	4.7486	4.7696950000000005	4.79079	0.00846427	0.00418965	0.0776969	0.0591344
chr1	100509408	100509508	174220	0	+	0.36	(0.35,0.378]	chr1	18914	41	INTRON	INTRON	CDC14A	ENSG00000079335.20	ENST00000647005.1:ENST00000336454.5:ENST00000644813.1	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.7486	4.7696950000000005	4.79079	0.00846427	0.00418965	0.0776969	0.0591344
chr10	42800477	42800573	4428211	0	+	0.375	(0.35,0.378]	chr10	408127	15	INTRON	INTRON	BMS1	ENSG00000165733.8	ENST00000374518.6	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.7486	4.7696950000000005	4.79079	0.00846427	0.00418965	0.0776969	0.0591344
chr12	32737233	32737306	5110350	0	+	0.356164	(0.35,0.378]	chr12	482531	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	DNM1L	ENSG00000087470.19	ENST00000414834.6:ENST00000452533.6:ENST00000358214.9:ENST00000553257.6:ENST00000549701.6:ENST00000266481.10:ENST00000546649.5:ENST00000547312.5:ENST00000381000.8:ENST00000546757.5:ENST00000550093.5:ENST00000547078.5:ENST00000548151.1:ENST00000552743.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	38	2	4.7486	4.7696950000000005	4.79079	0.00846427	0.00418965	0.0776969	0.0591344
chr16	21412228	21412325	6460425	0	-	0.360825	(0.35,0.378]	chr16	623178	5	INTRON	INTRON	NPIPB3	ENSG00000169246.16	ENST00000504841.6:ENST00000419180.6:ENST00000448012.6:ENST00000542953.1:ENST00000519305.6:ENST00000521589.5:ENST00000534903.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	38	2	4.7486	4.7696950000000005	4.79079	0.00846427	0.00418965	0.0776969	0.0591344
chr6	158017390	158017464	3017368	0	+	0.364865	(0.35,0.378]	chr6	281473	1	SS5_PROX	SS5_PROX:INTRON	SYNJ2	ENSG00000078269.15	ENST00000355585.9:ENST00000640338.1:ENST00000367113.5:ENST00000638626.1	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.7486	4.7696950000000005	4.79079	0.00846427	0.00418965	0.0776969	0.0591344
chr7	24950688	24950788	3505532	0	-	0.37	(0.35,0.378]	chr7	327114	327	INTRON	INTRON	OSBPL3	ENSG00000070882.13	ENST00000313367.7:ENST00000415952.1	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.7486	4.7696950000000005	4.79079	0.00846427	0.00418965	0.0776969	0.0591344
chr12	133152404	133152503	5253350	0	+	0.494949	(0.476,0.515]	chr12	499777	1	INTRON	INTRON	ZNF10	ENSG00000256223.6	ENST00000248211.11:ENST00000426665.6:ENST00000402932.2:ENST00000537119.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	37	2	4.61402	4.769655	4.92529	0.00947755	0.00180221	0.0817766	0.0392772
chr22	26509763	26509863	7564338	0	-	0.49	(0.476,0.515]	chr22	773970	3	SS5_PROX	SS5_PROX:INTRON	TFIP11	ENSG00000100109.17	ENST00000619735.4:ENST00000407690.6:ENST00000407148.5:ENST00000407431.5:ENST00000405938.5:ENST00000479489.5:ENST00000472918.5:ENST00000455080.5:ENST00000418876.5:ENST00000420242.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	37	2	4.61402	4.769655	4.92529	0.00947755	0.00180221	0.0817766	0.0392772
chrX	123904888	123904988	7716640	0	+	0.51	(0.476,0.515]	chrX	789435	38	INTRON	INTRON	XIAP	ENSG00000101966.13	ENST00000481776.5:ENST00000434753.7:ENST00000468691.5:ENST00000371199.8:ENST00000497640.1:ENST00000355640.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	37	2	4.61402	4.769655	4.92529	0.00947755	0.00180221	0.0817766	0.0392772
chr8	90546594	90546694	3795572	0	+	0.61	(0.57,1]	chr8	351838	72	INTRON	INTRON	LINC00534	ENSG00000253394.7	ENST00000655523.1:ENST00000658299.1:ENST00000662692.1:ENST00000667296.1:ENST00000653734.1:ENST00000654785.1:ENST00000524361.5	lncRNA	lncRNA	lncRNA	lncRNA	0	29	2	4.49107	4.769584999999999	5.0481	0.00220544	1.32594e-4	0.0417893	0.00992554
chr1	224131180	224131280	321281	0	+	0.33	(0.32,0.35]	chr1	37002	2	INTRON	INTRON	FBXO28	ENSG00000143756.12	ENST00000366862.10:ENST00000424254.6:ENST00000523990.1:ENST00000483773.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	39	2	4.53988	4.769550000000001	4.99922	0.0202178	0.00223907	0.109913	0.0435144
chr4	143366927	143367027	2054374	0	+	0.33	(0.32,0.35]	chr4	203721	230	INTRON	INTRON	GAB1	ENSG00000109458.9	ENST00000262995.8:ENST00000262994.9:ENST00000514639.5	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	4.53988	4.769550000000001	4.99922	0.0202178	0.00223907	0.109913	0.0435144
chr14	75929441	75929541	5794389	0	+	0.5	(0.476,0.515]	chr14	549052	224	INTRON	INTRON	TTLL5:IFT43	ENSG00000119685.20:ENSG00000119650.13	ENST00000298832.14:ENST00000554972.1:ENST00000555677.5:ENST00000554487.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	37	2	4.69918	4.7694	4.83962	0.00480934	0.00400966	0.0602209	0.057767
chr17	42504946	42505045	6611773	0	+	0.30303	(0.28,0.32]	chr17	644172	17	INTRON	INTRON	ATP6V0A1	ENSG00000033627.17	ENST00000393829.6:ENST00000343619.9:ENST00000537728.5:ENST00000264649.10:ENST00000585525.5:ENST00000544137.5:ENST00000587510.5:ENST00000586201.5:ENST00000588138.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	43	2	4.23719	4.76936	5.30153	0.0264147	0.00332518	0.133676	0.0512081
chr22	49525178	49525278	7601331	0	-	0.41	(0.408,0.44]	chr22	778566	836	INTRON	INTRON	MIR3667HG	ENSG00000188511.13	ENST00000414287.5:ENST00000416411.1	lncRNA	lncRNA	lncRNA	lncRNA	2	168	2	4.52958	4.769080000000001	5.00858	7.38293e-6	1.10884e-7	0.00205092	1.47965e-4
chr10	34620795	34620895	4598347	0	-	0.34	(0.32,0.35]	chr10	423718	1033	INTRON	INTRON	PARD3	ENSG00000148498.17	ENST00000545260.5:ENST00000545693.5:ENST00000346874.9:ENST00000350537.9:ENST00000374788.8:ENST00000374789.8:ENST00000374790.8:ENST00000374794.8:ENST00000696673.1:ENST00000374776.6:ENST00000340077.9:ENST00000374773.6	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	4.64046	4.76907	4.89768	0.00793135	0.00724767	0.076155	0.0756327
chr3	186955414	186955514	1586423	0	+	0.33	(0.32,0.35]	chr3	164326	61	INTRON	INTRON	ST6GAL1	ENSG00000073849.16	ENST00000676786.1:ENST00000463542.1:ENST00000169298.8:ENST00000457772.6:ENST00000455441.5:ENST00000427315.5:ENST00000677292.1:ENST00000468614.1:ENST00000458216.5:ENST00000430309.5:ENST00000417392.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	39	2	4.64046	4.76907	4.89768	0.00793135	0.00724767	0.076155	0.0756327
chr9	96398614	96398714	4295174	0	-	0.33	(0.32,0.35]	chr9	394969	3	SS3_PROX	SS3_PROX:INTRON	ZNF367	ENSG00000165244.7	ENST00000375256.5	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	4.64046	4.76907	4.89768	0.00793135	0.00724767	0.076155	0.0756327
chr1	111161225	111161296	183941	0	+	0.422535	(0.408,0.44]	chr1	20429	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CEPT1	ENSG00000134255.15	ENST00000545121.5:ENST00000498239.5:ENST00000357172.9:ENST00000460443.5:ENST00000478042.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	106	2	3.81093	4.76896	5.72699	1.93446e-4	9.03544e-6	0.0127226	0.00216015
chr19	49013390	49013489	7088334	0	+	0.424242	(0.408,0.44]	chr19	709500	17	INTRON	INTRON	RUVBL2	ENSG00000183207.14	ENST00000601968.5:ENST00000595090.6:ENST00000596247.5:ENST00000221413.10:ENST00000594338.1:ENST00000627972.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	37	2	4.67894	4.7688299999999995	4.85872	0.0087648	0.00221911	0.0788605	0.0435144
chr7	151234622	151234698	3448992	0	+	0.421053	(0.408,0.44]	chr7	322287	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CHPF2	ENSG00000033100.17	ENST00000035307.7:ENST00000495645.5:ENST00000482173.6:ENST00000691224.1:ENST00000685322.1:ENST00000692651.1:ENST00000690577.1:ENST00000690444.1:ENST00000689322.1:ENST00000465601.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	37	2	4.67894	4.7688299999999995	4.85872	0.0087648	0.00221911	0.0788605	0.0435144
chr2	19899831	19899930	1074678	0	-	0.262626	[0,0.28]	chr2	114709	14	INTRON	INTRON	TTC32	ENSG00000183891.6	ENST00000333610.4:ENST00000402414.1:ENST00000431392.1	protein_coding	protein_coding	protein_coding	protein_coding	2	128	2	3.0385	4.76876	6.49902	0.00116412	8.78851e-5	0.0314524	0.00842539
chr12	132678569	132678669	5449099	0	-	0.41	(0.408,0.44]	chr12	521856	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	POLE	ENSG00000177084.18	ENST00000320574.10:ENST00000672742.1:ENST00000537064.5:ENST00000535270.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	37	2	4.75398	4.76873	4.78348	0.00703931	0.00290352	0.0718189	0.0494641
chr16	30727986	30728081	6338960	0	+	0.410526	(0.408,0.44]	chr16	607822	19	INTRON	INTRON	SRCAP	ENSG00000080603.17	ENST00000262518.9:ENST00000395059.6	protein_coding	protein_coding	protein_coding	protein_coding	3	122	2	3.18515	4.768565000000001	6.35198	6.73915e-5	8.82199e-6	0.00679256	0.00228454
chr14	60092519	60092619	5735380	0	+	0.3	(0.28,0.32]	chr14	544734	1	SS5_PROX	SS5_PROX:INTRON	PCNX4	ENSG00000126773.13	ENST00000317623.8:ENST00000391611.6:ENST00000406854.6:ENST00000406949.5:ENST00000556907.1:ENST00000555569.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	40	2	4.50981	4.768235	5.02666	0.0275554	0.0027935	0.123904	0.0488769
chr16	30287662	30287761	6472884	0	-	0.292929	(0.28,0.32]	chr16	625657	10	INTRON	INTRON	SMG1P5	ENSG00000183604.15	ENST00000529428.5:ENST00000411546.4:ENST00000691460.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	40	2	4.50981	4.768235	5.02666	0.0275554	0.0027935	0.123904	0.0488769
chr6	89831054	89831149	2916455	0	+	0.315789	(0.28,0.32]	chr6	275597	11	EXON_MRNA	EXON_MRNA:INTRON	CASP8AP2	ENSG00000118412.13	ENST00000552401.5:ENST00000419040.6:ENST00000547893.5:ENST00000237177.10:ENST00000551025.4:ENST00000548224.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	40	2	4.50981	4.768235	5.02666	0.0275554	0.0027935	0.123904	0.0488769
chr11	28107663	28107763	4938445	0	-	0.46	(0.44,0.476]	chr11	462526	2	SS5_PROX	SS5_PROX:INTRON	KIF18A	ENSG00000121621.7	ENST00000263181.7:ENST00000526288.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	37	2	4.60647	4.768075	4.92968	0.0102339	0.00171443	0.0850389	0.0381936
chr19	45416572	45416655	7190945	0	-	0.46988	(0.44,0.476]	chr19	728107	2	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	ERCC1	ENSG00000012061.16	ENST00000423698.6:ENST00000300853.8:ENST00000340192.11:ENST00000590701.5:ENST00000591636.5:ENST00000589165.5:ENST00000013807.9:ENST00000592444.5:ENST00000589381.5:ENST00000587888.5:ENST00000592083.5:ENST00000592905.5:ENST00000592023.5:ENST00000588300.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	37	2	4.60647	4.768075	4.92968	0.0102339	0.00171443	0.0850389	0.0381936
chr22	24025976	24026076	7485307	0	+	0.46	(0.44,0.476]	chr22	763741	139	INTRON	INTRON	CABIN1	ENSG00000099991.18	ENST00000454754.5:ENST00000263119.10:ENST00000617531.4:ENST00000405822.6:ENST00000445422.5:ENST00000398319.6	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	4.60647	4.768075	4.92968	0.0102339	0.00171443	0.0850389	0.0381936
chr7	138473898	138473998	3434777	0	+	0.44	(0.408,0.44]	chr7	319959	122	INTRON	INTRON	TRIM24	ENSG00000122779.18	ENST00000343526.9:ENST00000415680.6:ENST00000497516.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	82	2	3.62972	4.768050000000001	5.90638	7.19047e-4	1.84308e-5	0.0246202	0.00328489
chr2	70210137	70210236	1152055	0	-	0.30303	(0.28,0.32]	chr2	123027	8	UTR3	UTR3:EXON_MRNA:INTRON	C2orf42:TIA1	ENSG00000115998.8:ENSG00000116001.17	ENST00000470096.1:ENST00000415783.6:ENST00000433529.7:ENST00000282574.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	90	2	3.35108	4.767995	6.18491	0.00221345	1.24314e-4	0.0435144	0.0100328
chr1	226389055	226389155	648184	0	-	0.51	(0.476,0.515]	chr1	76845	3	SS3_PROX	SS3_PROX:INTRON	PARP1	ENSG00000143799.14	ENST00000366794.10:ENST00000677203.1:ENST00000677884.1:ENST00000678560.1:ENST00000677091.1:ENST00000678144.1:ENST00000678781.1:ENST00000676685.1:ENST00000679276.1:ENST00000676709.1:ENST00000469663.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	39	2	4.32915	4.7678	5.20645	0.0124637	0.00136049	0.0973643	0.0336321
chr10	97650240	97650340	4504959	0	+	0.45	(0.44,0.476]	chr10	414704	87	INTRON	INTRON	PI4K2A	ENSG00000155252.13	ENST00000370631.3	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	4.70355	4.767785	4.83202	0.00525002	0.00383786	0.0633615	0.0562562
chr16	29607819	29607918	6471679	0	-	0.444444	(0.44,0.476]	chr16	625301	130	INTRON	INTRON	ENSG00000288632	ENSG00000288632.1	ENST00000675579.1	lncRNA	lncRNA	lncRNA	lncRNA	0	37	2	4.70355	4.767785	4.83202	0.00525002	0.00383786	0.0633615	0.0562562
chr16	85367845	85367945	6413508	0	+	0.46	(0.44,0.476]	chr16	615465	85	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	4.70355	4.767785	4.83202	0.00525002	0.00383786	0.0633615	0.0562562
chr6	34675254	34675354	3086005	0	-	0.31	(0.28,0.32]	chr6	288696	34	INTRON	INTRON	ILRUN	ENSG00000196821.10	ENST00000374026.7:ENST00000374023.8	protein_coding	protein_coding	protein_coding	protein_coding	0	40	2	4.6061	4.767695	4.92929	0.0102724	0.0098607	0.089002	0.0838128
chr1	179999474	179999574	267892	0	+	0.24	[0,0.28]	chr1	31331	19	INTRON	INTRON	CEP350	ENSG00000135837.16	ENST00000367607.8	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	4.62084	4.7674900000000004	4.91414	0.0313633	0.0064519	0.13151	0.0730725
chr1	155956437	155956534	564977	0	-	0.247423	[0,0.28]	chr1	67558	11	INTRON	INTRON	ARHGEF2	ENSG00000116584.22	ENST00000313695.11:ENST00000361247.9:ENST00000477754.2:ENST00000673475.1:ENST00000462460.6:ENST00000696600.1:ENST00000696601.1:ENST00000313667.8:ENST00000474428.6:ENST00000470975.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	41	2	4.71017	4.76725	4.82433	0.0200334	0.0114708	0.109608	0.0956037
chr10	68752262	68752361	4442585	0	+	0.242424	[0,0.28]	chr10	409640	22	INTRON	INTRON	CCAR1	ENSG00000060339.14	ENST00000630771.2:ENST00000543719.5:ENST00000541012.5:ENST00000265872.11:ENST00000539539.5:ENST00000543229.5:ENST00000536012.5:ENST00000543225.5:ENST00000540210.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	41	2	4.71017	4.76725	4.82433	0.0200334	0.0114708	0.109608	0.0956037
chr12	50455360	50455459	5136895	0	+	0.272727	[0,0.28]	chr12	484429	5	INTRON	INTRON	LARP4	ENSG00000161813.23	ENST00000293618.12:ENST00000429001.7:ENST00000398473.7:ENST00000522085.5:ENST00000518444.5:ENST00000518561.5:ENST00000347328.9:ENST00000520064.2	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	4.71017	4.76725	4.82433	0.0200334	0.0114708	0.109608	0.0956037
chr6	35915966	35916066	3088775	0	-	0.28	[0,0.28]	chr6	288898	106	INTRON	INTRON	SRPK1	ENSG00000096063.16	ENST00000373825.7:ENST00000423325.6:ENST00000346162.10:ENST00000361690.7:ENST00000510290.5:ENST00000508473.5:ENST00000512445.5:ENST00000513367.1:ENST00000507909.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	41	2	4.71017	4.76725	4.82433	0.0200334	0.0114708	0.109608	0.0956037
chr7	30366326	30366423	3301250	0	+	0.268041	[0,0.28]	chr7	306495	4	UTR3	UTR3:EXON_MRNA	ZNRF2	ENSG00000180233.11	ENST00000323037.5	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	4.71017	4.76725	4.82433	0.0200334	0.0114708	0.109608	0.0956037
chr15	65785032	65785132	6209724	0	-	0.54	(0.515,0.57]	chr15	592617	178	INTRON	INTRON	DENND4A	ENSG00000174485.16	ENST00000443035.8:ENST00000431932.6:ENST00000564674.5:ENST00000568515.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	419	2	4.11508	4.767215	5.41935	8.00311e-10	4.7342e-11	6.23812e-6	6.0481e-7
chr2	151428184	151428283	893394	0	+	0.373737	(0.35,0.378]	chr2	98908	46	INTRON	INTRON	RIF1	ENSG00000080345.18	ENST00000453091.6:ENST00000428287.6:ENST00000444746.7:ENST00000243326.9:ENST00000414861.6:ENST00000430328.6	protein_coding	protein_coding	protein_coding	protein_coding	1	80	2	3.8412	4.766545	5.69189	3.71413e-4	1.97447e-4	0.0178698	0.0122531
chr1	148922920	148923019	214981	0	+	0.515152	(0.476,0.515]	chr1	23784	73	INTRON	INTRON	PDE4DIP	ENSG00000178104.20	ENST00000695768.1:ENST00000695767.1:ENST00000695766.1:ENST00000530472.5:ENST00000695794.1:ENST00000524974.5:ENST00000585156.5:ENST00000695769.1:ENST00000618462.4:ENST00000695795.1:ENST00000617031.4:ENST00000617527.4:ENST00000533259.1:ENST00000619981.4:ENST00000617454.4:ENST00000613995.4:ENST00000621371.4:ENST00000534536.5:ENST00000528129.5:ENST00000369356.8:ENST00000533845.1:ENST00000526445.1:ENST00000369354.7:ENST00000369347.8:ENST00000369349.7:ENST00000369351.7:ENST00000612094.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	40	2	4.13586	4.766475	5.39709	0.031846	2.55871e-4	0.13151	0.0142249
chr11	3737321	3737420	4894559	0	-	0.494949	(0.476,0.515]	chr11	458864	16	INTRON	INTRON	NUP98	ENSG00000110713.17	ENST00000359171.8:ENST00000324932.12:ENST00000650171.1:ENST00000355260.7:ENST00000397004.8:ENST00000397007.8:ENST00000527104.5:ENST00000529379.1:ENST00000397013.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	40	2	4.13586	4.766475	5.39709	0.031846	2.55871e-4	0.13151	0.0142249
chr19	40354753	40354853	7068946	0	+	0.51	(0.476,0.515]	chr19	706105	56	INTRON	INTRON	PLD3	ENSG00000105223.20	ENST00000599685.5:ENST00000600479.5:ENST00000392032.6:ENST00000598962.5:ENST00000409419.5:ENST00000409587.5:ENST00000602131.5:ENST00000594085.5:ENST00000409735.9:ENST00000356508.9:ENST00000600948.5:ENST00000594908.5:ENST00000596682.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	40	2	4.13586	4.766475	5.39709	0.031846	2.55871e-4	0.13151	0.0142249
chr17	28640215	28640305	6745117	0	-	0.511111	(0.476,0.515]	chr17	662663	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	KIAA0100	ENSG00000007202.15	ENST00000528896.7:ENST00000544884.5:ENST00000389003.7:ENST00000580882.5:ENST00000581267.1:ENST00000577417.5:ENST00000583403.5:ENST00000577580.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	81	2	3.74144	4.76614	5.79084	4.08784e-4	3.67793e-5	0.0185763	0.00485247
chr6	41920699	41920799	3094156	0	-	0.47	(0.44,0.476]	chr6	289480	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	MED20	ENSG00000124641.16	ENST00000265350.9:ENST00000467535.5:ENST00000482361.1:ENST00000409312.5:ENST00000409060.1:ENST00000434077.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	39	2	4.33346	4.76613	5.1988	0.0120349	0.00151532	0.0962115	0.0352794
chr1	224005268	224005363	321051	0	+	0.252632	[0,0.28]	chr1	36983	6	INTRON	INTRON	SEPTIN7P13	ENSG00000185495.10	ENST00000449219.2:ENST00000572124.2	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript	0	42	2	4.38387	4.76582	5.14777	0.0501911	0.00311898	0.156383	0.0512673
chr10	14850633	14850714	4396857	0	+	0.259259	[0,0.28]	chr10	405901	5	INTRON	INTRON	HSPA14	ENSG00000187522.16	ENST00000378372.8	protein_coding	protein_coding	protein_coding	protein_coding	0	42	2	4.38387	4.76582	5.14777	0.0501911	0.00311898	0.156383	0.0512673
chr11	103066767	103066867	5026320	0	-	0.28	[0,0.28]	chr11	473934	2	SS3_PROX	SS3_PROX:INTRON	DCUN1D5	ENSG00000137692.12	ENST00000260247.10:ENST00000527260.5:ENST00000531571.5:ENST00000531543.1:ENST00000529281.5:ENST00000529294.5:ENST00000527576.5:ENST00000527779.1:ENST00000583974.1:ENST00000525420.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	42	2	4.38387	4.76582	5.14777	0.0501911	0.00311898	0.156383	0.0512673
chr3	172084791	172084891	1559996	0	+	0.26	[0,0.28]	chr3	161527	375	INTRON	INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000421757.5:ENST00000469491.5:ENST00000336824.8:ENST00000423424.5:ENST00000416957.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	42	2	4.38387	4.76582	5.14777	0.0501911	0.00311898	0.156383	0.0512673
chr6	129627152	129627252	3217975	0	-	0.25	[0,0.28]	chr6	299107	79	INTRON	INTRON	ARHGAP18	ENSG00000146376.11	ENST00000368149.3	protein_coding	protein_coding	protein_coding	protein_coding	0	42	2	4.38387	4.76582	5.14777	0.0501911	0.00311898	0.156383	0.0512673
chr6	4903753	4903852	2792138	0	+	0.40404	(0.378,0.408]	chr6	263614	110	INTRON	INTRON	CDYL	ENSG00000153046.18	ENST00000328908.9:ENST00000440139.5:ENST00000397588.8:ENST00000472453.5:ENST00000449732.6:ENST00000343762.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	78	2	3.64529	4.765765	5.88624	4.71767e-4	1.19481e-4	0.0196294	0.00988798
chr1	193233354	193233454	285740	0	+	0.28	[0,0.28]	chr1	32845	2	SS5_PROX	SS5_PROX:INTRON	CDC73	ENSG00000134371.14	ENST00000649895.1:ENST00000643006.1:ENST00000367435.5:ENST00000650197.1:ENST00000648071.1:ENST00000635846.1:ENST00000649613.1:ENST00000477868.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	94	2	3.66971	4.76568	5.86165	0.00101071	7.51669e-4	0.0291154	0.0251578
chr10	11554411	11554510	4555491	0	-	0.414141	(0.408,0.44]	chr10	420447	223	INTRON	INTRON	USP6NL	ENSG00000148429.15	ENST00000609104.6:ENST00000379237.6	protein_coding	protein_coding	protein_coding	protein_coding	1	77	2	4.00339	4.765485	5.52758	4.54953e-4	7.25052e-5	0.0196892	0.00709818
chr14	103658963	103659061	5827946	0	+	0.418367	(0.408,0.44]	chr14	553069	8	INTRON	INTRON	KLC1	ENSG00000126214.22	ENST00000348520.10:ENST00000380038.7:ENST00000334553.11:ENST00000389744.8:ENST00000555836.5:ENST00000347839.10:ENST00000553286.5:ENST00000557575.5:ENST00000452929.6:ENST00000554280.5:ENST00000557450.5:ENST00000554228.5:ENST00000634686.1:ENST00000246489.11:ENST00000445352.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	37	2	4.59979	4.765015	4.93024	0.0109537	0.00170369	0.0873034	0.0381936
chr2	3467329	3467429	686643	0	+	0.41	(0.408,0.44]	chr2	80551	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	TRAPPC12	ENSG00000171853.16	ENST00000382110.6:ENST00000324266.10:ENST00000417243.5:ENST00000469147.5:ENST00000433382.5:ENST00000415624.5:ENST00000497597.5:ENST00000473348.5:ENST00000461577.5:ENST00000489032.5:ENST00000437733.5:ENST00000416918.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	37	2	4.59979	4.765015	4.93024	0.0109537	0.00170369	0.0873034	0.0381936
chr12	123191689	123191789	5443636	0	-	0.45	(0.44,0.476]	chr12	520806	101	INTRON	INTRON	MPHOSPH9	ENSG00000051825.15	ENST00000606320.6:ENST00000541076.6:ENST00000545556.6:ENST00000302373.8:ENST00000539024.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	40	2	4.12843	4.764975	5.40152	0.0337192	2.39829e-4	0.134145	0.0136403
chr7	10748094	10748194	3484261	0	-	0.41	(0.408,0.44]	chr7	325772	1862	INTRON	INTRON	MGC4859	ENSG00000283117.1	ENST00000634803.1	lncRNA	lncRNA	lncRNA	lncRNA	1	82	2	3.48793	4.764815	6.0417	0.00130904	8.54902e-6	0.0331539	0.00210871
chr2	96920564	96920664	1182435	0	-	0.48	(0.476,0.515]	chr2	126741	175	INTRON	INTRON	FAM178B	ENSG00000168754.15	ENST00000490605.3	protein_coding	protein_coding	protein_coding	protein_coding	2	168	2	4.63127	4.764805	4.89834	1.64137e-6	6.55915e-7	7.75014e-4	4.79925e-4
chr1	31065315	31065415	412896	0	-	0.64	(0.57,1]	chr1	49753	3	SS5_PROX	SS5_PROX:INTRON	PUM1	ENSG00000134644.16	ENST00000426105.7:ENST00000373747.7:ENST00000257075.9:ENST00000424085.6:ENST00000525843.5:ENST00000440538.6:ENST00000373741.8:ENST00000373742.6:ENST00000526215.5:ENST00000525948.5:ENST00000480602.1:ENST00000524516.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	55	2	4.32564	4.7648	5.20396	5.65393e-5	3.96927e-6	0.00613846	0.00143365
chr12	120259340	120259440	5433838	0	-	0.42	(0.408,0.44]	chr12	519470	93	INTRON	INTRON	PXN	ENSG00000089159.17	ENST00000267257.11:ENST00000228307.11:ENST00000424649.6:ENST00000637617.2:ENST00000323871.9:ENST00000547983.5:ENST00000440827.3:ENST00000547746.1:ENST00000547772.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	37	2	4.7041	4.7647	4.8253	0.0056738	0.00381677	0.0653997	0.0562562
chr15	20476224	20476324	6118641	0	-	0.42	(0.408,0.44]	chr15	582467	95	INTRON	INTRON	HERC2P3	ENSG00000180229.12	ENST00000428453.5:ENST00000437318.5:ENST00000430598.5:ENST00000429257.5:ENST00000414804.5:ENST00000412154.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	37	2	4.7041	4.7647	4.8253	0.0056738	0.00381677	0.0653997	0.0562562
chr2	111447111	111447211	1211322	0	-	0.41	(0.408,0.44]	chr2	128905	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	MIR4435-2HG	ENSG00000172965.17	ENST00000645030.2:ENST00000642191.1:ENST00000673798.1:ENST00000645051.2:ENST00000673649.1:ENST00000669658.1:ENST00000669917.1:ENST00000661559.1:ENST00000653687.1:ENST00000667670.1:ENST00000609220.2:ENST00000656760.1:ENST00000609902.6:ENST00000666683.1:ENST00000674070.1:ENST00000662335.1:ENST00000664422.1:ENST00000673775.1:ENST00000674092.1:ENST00000673958.1:ENST00000658936.1:ENST00000662635.1:ENST00000666204.1:ENST00000659458.1:ENST00000664443.1:ENST00000670295.1:ENST00000661655.1:ENST00000666390.1:ENST00000659079.1:ENST00000660442.1:ENST00000664009.1:ENST00000439362.6:ENST00000654473.1:ENST00000664999.1:ENST00000673728.1:ENST00000659791.1:ENST00000666144.1:ENST00000659933.1:ENST00000670715.1:ENST00000653568.1:ENST00000643013.1:ENST00000673866.1:ENST00000443467.6:ENST00000669875.1:ENST00000673653.1:ENST00000673988.1:ENST00000661945.1:ENST00000669515.1:ENST00000431385.6:ENST00000656416.1:ENST00000674037.1:ENST00000432818.5:ENST00000674013.1:ENST00000444301.5:ENST00000673964.1:ENST00000673845.1:ENST00000673756.1:ENST00000673960.1:ENST00000673804.1:ENST00000673632.1:ENST00000453478.2:ENST00000673937.1:ENST00000673654.1:ENST00000409569.2:ENST00000674087.1:ENST00000419736.5:ENST00000673840.1:ENST00000674045.1:ENST00000673821.1:ENST00000643766.1:ENST00000308604.5:ENST00000674026.1:ENST00000604981.5:ENST00000673894.1:ENST00000442293.5:ENST00000441075.1	lncRNA	lncRNA	lncRNA	lncRNA	0	37	2	4.7041	4.7647	4.8253	0.0056738	0.00381677	0.0653997	0.0562562
chr5	126964955	126965054	2713902	0	-	0.292929	(0.28,0.32]	chr5	255278	182	INTRON	INTRON	MARCHF3	ENSG00000173926.6	ENST00000308660.6:ENST00000502289.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	117	2	3.34408	4.764495	6.18491	2.20552e-4	1.24314e-4	0.0130309	0.0100328
chr19	10652059	10652158	7136574	0	-	0.373737	(0.35,0.378]	chr19	719707	3	EXON_LNCRNA	EXON_LNCRNA	ILF3-DT	ENSG00000267100.1	ENST00000591501.1	lncRNA	lncRNA	lncRNA	lncRNA	0	38	2	4.5655	4.7644	4.9633	0.0155464	0.00198929	0.100909	0.0411469
chr5	131567037	131567136	2718488	0	-	0.353535	(0.35,0.378]	chr5	255608	46	INTRON	INTRON	RAPGEF6	ENSG00000158987.22	ENST00000509018.6:ENST00000507093.5:ENST00000296859.10:ENST00000627212.2:ENST00000308008.10:ENST00000515170.5:ENST00000510071.5:ENST00000503398.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	38	2	4.5655	4.7644	4.9633	0.0155464	0.00198929	0.100909	0.0411469
chr19	5937534	5937633	7125193	0	-	0.373737	(0.35,0.378]	chr19	717348	13	INTRON	INTRON	RANBP3	ENSG00000031823.14	ENST00000340578.10:ENST00000439268.6:ENST00000592771.5:ENST00000591092.5:ENST00000034275.12:ENST00000587479.2:ENST00000592621.5:ENST00000590623.5:ENST00000591736.5:ENST00000590953.5:ENST00000588879.5:ENST00000587159.5:ENST00000586117.5:ENST00000589353.5:ENST00000587463.5:ENST00000588010.5:ENST00000591124.5:ENST00000585339.5:ENST00000592133.5:ENST00000591881.5:ENST00000589886.5:ENST00000587263.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	38	2	4.66929	4.7639949999999995	4.8587	0.00695662	0.00541617	0.0718189	0.066545000000000007
chr3	155849537	155849636	1844300	0	-	0.353535	(0.35,0.378]	chr3	185563	41	INTRON	INTRON	SLC33A1	ENSG00000169359.16	ENST00000643144.2:ENST00000359479.7:ENST00000468581.2:ENST00000646424.1:ENST00000644094.1:ENST00000642438.1:ENST00000644855.1:ENST00000475842.5:ENST00000460729.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	38	2	4.66929	4.7639949999999995	4.8587	0.00695662	0.00541617	0.0718189	0.066545000000000007
chr3	177108913	177109012	1871554	0	-	0.353535	(0.35,0.378]	chr3	187402	96	INTRON	INTRON	TBL1XR1	ENSG00000177565.18	ENST00000457928.7:ENST00000430069.5:ENST00000673974.1:ENST00000352800.10:ENST00000422442.6:ENST00000428970.5:ENST00000424913.5:ENST00000437738.5:ENST00000431421.5:ENST00000635794.1:ENST00000630796.2:ENST00000450267.5:ENST00000630833.2:ENST00000431674.5:ENST00000422066.5:ENST00000443315.5:ENST00000627825.2:ENST00000427349.5:ENST00000413084.5:ENST00000637137.1:ENST00000491623.2:ENST00000637544.1:ENST00000636478.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	38	2	4.66929	4.7639949999999995	4.8587	0.00695662	0.00541617	0.0718189	0.066545000000000007
chr7	72983065	72983163	3553946	0	-	0.377551	(0.35,0.378]	chr7	330644	27	INTRON	INTRON	STAG3L3	ENSG00000174353.17	ENST00000436857.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	38	2	4.66929	4.7639949999999995	4.8587	0.00695662	0.00541617	0.0718189	0.066545000000000007
chr7	129049675	129049774	3636529	0	-	0.353535	(0.35,0.378]	chr7	338148	76	INTRON	INTRON	TNPO3	ENSG00000064419.14	ENST00000627585.2:ENST00000265388.10:ENST00000471234.5:ENST00000482320.5:ENST00000471166.1	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.66929	4.7639949999999995	4.8587	0.00695662	0.00541617	0.0718189	0.066545000000000007
chr5	139580385	139580484	2500694	0	+	0.444444	(0.44,0.476]	chr5	239026	176	INTRON	INTRON	UBE2D2	ENSG00000131508.16	ENST00000511725.5:ENST00000505007.5:ENST00000398733.8:ENST00000510470.1:ENST00000398734.8:ENST00000505548.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	131	2	2.95304	4.76394	6.57484	3.68938e-4	2.99813e-7	0.0178272	2.73247e-4
chr3	33038019	33038118	1650555	0	-	0.262626	[0,0.28]	chr3	169229	1	INTRON	INTRON	GLB1	ENSG00000170266.16	ENST00000399402.7:ENST00000307363.10:ENST00000307377.12:ENST00000482097.5:ENST00000485698.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	95	2	3.86326	4.763495	5.66373	0.00196371	3.23716e-4	0.0401678	0.0159645
chr7	30598295	30598395	3301461	0	+	0.26	[0,0.28]	chr7	306516	1	SS3_PROX	SS3_PROX:INTRON	GARS1	ENSG00000106105.15	ENST00000675051.1:ENST00000470392.2:ENST00000674643.1:ENST00000675529.1:ENST00000674807.1:ENST00000675810.1:ENST00000676088.1:ENST00000674815.1:ENST00000676403.1:ENST00000485784.2:ENST00000676210.1:ENST00000478124.6:ENST00000454308.6:ENST00000389266.8:ENST00000675693.1:ENST00000676259.1:ENST00000675651.1:ENST00000674616.1:ENST00000674737.1:ENST00000675859.1:ENST00000676140.1:ENST00000674969.1:ENST00000676164.1:ENST00000675886.1:ENST00000444666.6:ENST00000675587.1:ENST00000674851.1:ENST00000675863.1:ENST00000675025.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	95	2	3.86326	4.763495	5.66373	0.00196371	3.23716e-4	0.0401678	0.0159645
chr6	47518520	47518620	2873973	0	+	0.34	(0.32,0.35]	chr6	272731	147	INTRON	INTRON	CD2AP	ENSG00000198087.7	ENST00000359314.5	protein_coding	protein_coding	protein_coding	protein_coding	1	85	2	4.06044	4.76343	5.46642	0.00127669	7.3644e-5	0.0326395	0.00714826
chr17	48995582	48995682	6791787	0	-	0.46	(0.44,0.476]	chr17	670127	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	ENSG00000250838	ENSG00000250838.1	ENST00000505903.1	lncRNA	lncRNA	lncRNA	lncRNA	0	40	2	4.22393	4.763415	5.3029	0.0162322	0.00102616	0.109464	0.029231300000000002
chr7	27621472	27621572	3510525	0	-	0.47	(0.44,0.476]	chr7	327330	780	INTRON	INTRON	HIBADH	ENSG00000106049.9	ENST00000265395.7:ENST00000428288.2:ENST00000425715.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	40	2	4.22393	4.763415	5.3029	0.0162322	0.00102616	0.109464	0.029231300000000002
chr8	41793354	41793453	3939019	0	-	0.414141	(0.408,0.44]	chr8	361127	37	INTRON	INTRON	ANK1	ENSG00000029534.21	ENST00000347528.8:ENST00000265709.13:ENST00000289734.13:ENST00000521407.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	132	2	2.86357	4.7627749999999995	6.66198	5.90913e-4	1.63034e-7	0.0225024	1.85753e-4
chr14	69614220	69614320	5775734	0	+	0.49	(0.476,0.515]	chr14	547295	20	INTRON	INTRON	SUSD6	ENSG00000100647.8	ENST00000342745.5:ENST00000553497.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	38	2	4.43093	4.76258	5.09423	0.00931369	0.00204588	0.0855292	0.04086
chr3	186970783	186970883	1586579	0	+	0.33	(0.32,0.35]	chr3	164332	65	INTRON	INTRON	ST6GAL1	ENSG00000073849.16	ENST00000676786.1:ENST00000169298.8:ENST00000457772.6:ENST00000455441.5:ENST00000427315.5:ENST00000677292.1:ENST00000458216.5:ENST00000430309.5:ENST00000417392.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	83	2	3.65187	4.762575	5.87328	5.49434e-4	2.6344e-4	0.0213049	0.0149561
chr10	118743701	118743801	4704308	0	-	0.38	(0.378,0.408]	chr10	433898	129	INTRON	INTRON	CACUL1	ENSG00000151893.15	ENST00000369151.8:ENST00000493518.5:ENST00000477583.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	38	2	4.41169	4.7624200000000005	5.11315	0.0199606	9.26795e-4	0.109608	0.0278442
chr15	28168787	28168885	6122456	0	-	0.397959	(0.378,0.408]	chr15	583079	2	SS3_PROX	SS3_PROX:INTRON	HERC2	ENSG00000128731.18	ENST00000261609.13:ENST00000650509.1:ENST00000569772.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	38	2	4.41169	4.7624200000000005	5.11315	0.0199606	9.26795e-4	0.109608	0.0278442
chr16	84735675	84735774	6410268	0	+	0.393939	(0.378,0.408]	chr16	615290	18	INTRON	INTRON	USP10	ENSG00000103194.16	ENST00000562743.5:ENST00000540269.6:ENST00000563892.5:ENST00000562092.1:ENST00000219473.12:ENST00000570191.5:ENST00000563048.5:ENST00000562283.5:ENST00000563386.5:ENST00000569038.5:ENST00000570053.1:ENST00000566512.1:ENST00000563023.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	38	2	4.41169	4.7624200000000005	5.11315	0.0199606	9.26795e-4	0.109608	0.0278442
chr3	119437254	119437328	1791714	0	-	0.432432	(0.408,0.44]	chr3	179922	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TMEM39A	ENSG00000176142.13	ENST00000319172.10:ENST00000438581.6:ENST00000468545.1:ENST00000491685.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	40	2	4.12187	4.761975	5.40208	0.0354689	2.37882e-4	0.137535	0.0136195
chr16	258787	258884	6271858	0	+	0.525773	(0.515,0.57]	chr16	598403	38	INTRON	INTRON	FAM234A	ENSG00000167930.17	ENST00000301679.7:ENST00000666018.1:ENST00000653392.1:ENST00000659283.1:ENST00000654053.1:ENST00000419173.5:ENST00000399932.8:ENST00000438220.5:ENST00000453430.5:ENST00000449945.5:ENST00000420046.5:ENST00000301678.7:ENST00000420500.5:ENST00000600536.1:ENST00000496874.1:ENST00000421000.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	35	2	4.59914	4.761935	4.92473	0.00616166	0.00108255	0.0676501	0.0300133
chr19	29964532	29964632	7047777	0	+	0.55	(0.515,0.57]	chr19	702663	61	INTRON	INTRON	URI1	ENSG00000105176.18	ENST00000360605.8:ENST00000570564.5:ENST00000574233.5:ENST00000392271.6:ENST00000574110.5:ENST00000574666.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	35	2	4.59914	4.761935	4.92473	0.00616166	0.00108255	0.0676501	0.0300133
chr6	110810463	110810563	3190408	0	-	0.53	(0.515,0.57]	chr6	297127	362	INTRON	INTRON	CDK19	ENSG00000155111.15	ENST00000323817.7:ENST00000368911.8:ENST00000413605.6:ENST00000457688.5:ENST00000460913.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	35	2	4.59914	4.761935	4.92473	0.00616166	0.00108255	0.0676501	0.0300133
chr13	64044813	64044913	5606320	0	-	0.46	(0.44,0.476]	chr13	535589	99	INTRON	INTRON	LINC00355	ENSG00000227674.3	ENST00000650541.1:ENST00000456627.1:ENST00000669788.1:ENST00000654282.1	lncRNA	lncRNA	lncRNA	lncRNA	0	38	2	4.33899	4.7619	5.18481	0.0206616	6.21872e-4	0.110999	0.0223951
chr2	216511458	216511558	1016202	0	+	0.45	(0.44,0.476]	chr2	108187	75	INTRON	INTRON	RPL37A	ENSG00000197756.10	ENST00000600880.5:ENST00000446558.5:ENST00000598925.5:ENST00000427280.6:ENST00000441179.2	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.33899	4.7619	5.18481	0.0206616	6.21872e-4	0.110999	0.0223951
chr13	32683179	32683278	5466287	0	+	0.494949	(0.476,0.515]	chr13	523769	39	INTRON	INTRON	PDS5B	ENSG00000083642.19	ENST00000315596.15:ENST00000498550.5:ENST00000450460.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	37	2	4.53023	4.761825	4.99342	0.0119748	0.00139274	0.0899583	0.0341261
chr19	10185655	10185755	7134787	0	-	0.48	(0.476,0.515]	chr19	719261	12	INTRON	INTRON	DNMT1	ENSG00000130816.17	ENST00000340748.8:ENST00000359526.9:ENST00000592705.5:ENST00000679103.1:ENST00000677634.1:ENST00000676820.1:ENST00000677250.1:ENST00000677013.1:ENST00000677685.1:ENST00000676610.1:ENST00000678804.1:ENST00000679313.1:ENST00000677946.1:ENST00000586988.5:ENST00000588952.5:ENST00000588118.5:ENST00000592342.5:ENST00000592054.5:ENST00000586800.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	37	2	4.53023	4.761825	4.99342	0.0119748	0.00139274	0.0899583	0.0341261
chr2	53880155	53880255	1119617	0	-	0.51	(0.476,0.515]	chr2	119877	40	INTRON	INTRON	PSME4	ENSG00000068878.15	ENST00000404125.6:ENST00000389993.7:ENST00000476586.5:ENST00000466539.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	37	2	4.53023	4.761825	4.99342	0.0119748	0.00139274	0.0899583	0.0341261
chr10	63242466	63242566	4633152	0	-	0.53	(0.515,0.57]	chr10	426215	221	INTRON	INTRON	JMJD1C	ENSG00000171988.20	ENST00000399262.7:ENST00000402544.5:ENST00000542921.5:ENST00000469152.5:ENST00000489372.4:ENST00000633035.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	35	2	4.68568	4.76166	4.83764	0.00279527	0.00270027	0.0479115	0.0469265
chrX	18300494	18300594	7770509	0	-	0.52	(0.515,0.57]	chrX	794176	118	INTRON	INTRON	SCML2	ENSG00000102098.19	ENST00000251900.9	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.68568	4.76166	4.83764	0.00279527	0.00270027	0.0479115	0.0469265
chrX	71466346	71466425	7679273	0	+	0.518987	(0.515,0.57]	chrX	786346	2	EXON_LNCRNA	EXON_LNCRNA:INTRON	TAF1	ENSG00000147133.17	ENST00000683668.1:ENST00000373775.8:ENST00000485087.6:ENST00000437147.8:ENST00000683358.1:ENST00000682124.1:ENST00000461764.6:ENST00000462588.5:ENST00000468167.6:ENST00000482544.5:ENST00000467309.5	protein_coding	retained_intron	protein_coding	retained_intron:nonsense_mediated_decay:processed_transcript	0	35	2	4.68568	4.76166	4.83764	0.00279527	0.00270027	0.0479115	0.0469265
chr17	42981910	42982003	6613004	0	+	0.397849	(0.378,0.408]	chr17	644650	10	EXON_MRNA	EXON_MRNA:INTRON	RUNDC1	ENSG00000198863.8	ENST00000361677.6:ENST00000590836.1:ENST00000589705.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	38	2	4.51854	4.761565	5.00459	0.00748824	0.00371142	0.0772645	0.0535094
chr6	88290103	88290202	3154050	0	-	0.383838	(0.378,0.408]	chr6	294133	88	INTRON	INTRON	ENSG00000234426	ENSG00000234426.3	ENST00000648572.1	lncRNA	lncRNA	lncRNA	lncRNA	0	38	2	4.51854	4.761565	5.00459	0.00748824	0.00371142	0.0772645	0.0535094
chr12	64647318	64647418	5155366	0	+	0.51	(0.476,0.515]	chr12	488093	358	INTRON	INTRON	RASSF3	ENSG00000153179.13	ENST00000637125.1:ENST00000542104.6:ENST00000283172.8:ENST00000336061.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	37	2	4.61519	4.7614	4.90761	0.00528365	0.00386428	0.0656295	0.0542786
chr8	55898282	55898382	3754519	0	+	0.49	(0.476,0.515]	chr8	349249	178	INTRON	INTRON	LYN	ENSG00000254087.8	ENST00000519728.6:ENST00000520220.6	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	4.61519	4.7614	4.90761	0.00528365	0.00386428	0.0656295	0.0542786
chr11	73691892	73691991	4985091	0	-	0.50505	(0.476,0.515]	chr11	470855	118	INTRON	INTRON	RAB6A	ENSG00000175582.20	ENST00000310653.10:ENST00000336083.8:ENST00000541973.5:ENST00000536566.5:ENST00000541588.5:ENST00000545625.5:ENST00000540771.5:ENST00000537446.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	140	2	3.13177	4.76118	6.39059	2.86358e-5	5.37054e-6	0.00423808	0.00172277
chr1	215618701	215618793	314708	0	+	0.206522	[0,0.28]	chr1	36279	6	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	KCTD3	ENSG00000136636.13	ENST00000259154.9:ENST00000452413.1:ENST00000495537.1:ENST00000465650.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	41	2	4.63523	4.76074	4.88625	0.0173315	0.0139836	0.104099	0.10247
chr1	224274641	224274739	644343	0	-	0.214286	[0,0.28]	chr1	76099	49	INTRON	INTRON	NVL	ENSG00000143748.18	ENST00000391875.6:ENST00000469968.5:ENST00000482491.5:ENST00000281701.11:ENST00000469075.5:ENST00000340871.8	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	4.63523	4.76074	4.88625	0.0173315	0.0139836	0.104099	0.10247
chr7	100350387	100350478	3364485	0	+	0.505495	(0.476,0.515]	chr7	314654	1	INTRON	INTRON	STAG3L5P:STAG3L5P-PVRIG2P-PILRB	ENSG00000242294.6:ENSG00000272752.6	ENST00000473757.5:ENST00000470714.5:ENST00000310771.8:ENST00000483329.6:ENST00000444874.5	lncRNA	retained_intron	lncRNA:transcribed_unprocessed_pseudogene	retained_intron:lncRNA	2	108	2	3.27481	4.760725	6.24664	2.99781e-4	2.70752e-6	0.0160591	0.00105261
chr2	241251580	241251677	1347903	0	-	0.474227	(0.44,0.476]	chr2	141567	7	INTRON	INTRON	HDLBP	ENSG00000115677.18	ENST00000391975.5:ENST00000427183.6:ENST00000310931.10:ENST00000391976.6:ENST00000373292.8:ENST00000498595.5:ENST00000477477.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	37	2	4.5227	4.760260000000001	4.99782	0.0128818	0.0013223	0.0926667	0.0333932
chr22	47862684	47862783	7541694	0	+	0.454545	(0.44,0.476]	chr22	770797	8	EXON_LNCRNA	EXON_LNCRNA:INTRON	ENSG00000224271	ENSG00000224271.7	ENST00000664761.1:ENST00000650683.1:ENST00000651536.1:ENST00000651445.1:ENST00000650660.1:ENST00000651056.1:ENST00000652399.1:ENST00000652123.1:ENST00000652030.2:ENST00000651403.1:ENST00000652228.1:ENST00000651124.1:ENST00000651003.1:ENST00000651948.2:ENST00000651939.1:ENST00000651638.1:ENST00000670853.1:ENST00000652080.1:ENST00000651294.1:ENST00000651538.1:ENST00000651033.1:ENST00000651584.1:ENST00000449941.2	lncRNA	lncRNA	lncRNA	lncRNA	0	37	2	4.61954	4.75977	4.9	0.00506805	0.00423315	0.0646039	0.0572185
chr3	170298408	170298494	1558077	0	+	0.465116	(0.44,0.476]	chr3	161407	7	INTRON	INTRON	PRKCI	ENSG00000163558.13	ENST00000295797.5:ENST00000476635.5:ENST00000485837.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	37	2	4.61954	4.75977	4.9	0.00506805	0.00423315	0.0646039	0.0572185
chr1	155818531	155818630	564055	0	-	0.343434	(0.32,0.35]	chr1	67348	19	INTRON	INTRON	GON4L	ENSG00000116580.20	ENST00000368331.6:ENST00000615926.4:ENST00000437809.5:ENST00000271883.9:ENST00000361040.9:ENST00000622608.2:ENST00000471341.5:ENST00000467009.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	39	2	4.45629	4.75884	5.06139	0.0246089	0.00179023	0.12011	0.0392749
chr2	235615416	235615516	1042551	0	+	0.34	(0.32,0.35]	chr2	111222	905	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1:ENST00000402604.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	39	2	4.45629	4.75884	5.06139	0.0246089	0.00179023	0.12011	0.0392749
chr2	108745815	108745914	847681	0	+	0.262626	[0,0.28]	chr2	94821	48	INTRON	INTRON	RANBP2	ENSG00000153201.16	ENST00000283195.11	protein_coding	protein_coding	protein_coding	protein_coding	1	103	2	3.33621	4.758585	6.18096	0.00427056	4.96998e-5	0.0573912	0.00577648
chr17	46101791	46101891	6783952	0	-	0.28	[0,0.28]	chr17	669208	67	INTRON	INTRON	KANSL1	ENSG00000120071.15	ENST00000574590.6:ENST00000572904.6:ENST00000432791.7:ENST00000575318.6:ENST00000638275.1:ENST00000262419.10:ENST00000648792.1:ENST00000639531.1:ENST00000639150.1:ENST00000639853.1:ENST00000571698.2:ENST00000639375.1:ENST00000577114.2:ENST00000638269.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	96	2	3.96322	4.75839	5.55356	0.00278704	2.04896e-4	0.0469265	0.0124557
chr10	94605409	94605509	4500239	0	+	0.35	(0.32,0.35]	chr10	414337	34	INTRON	INTRON	ENSG00000244332:HELLS	ENSG00000244332.1:ENSG00000119969.15	ENST00000432120.1:ENST00000371327.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	0	39	2	4.55661	4.75816	4.95971	0.00927858	0.00663522	0.0855292	0.0703181
chr9	26888899	26888998	4237577	0	-	0.323232	(0.32,0.35]	chr9	389570	10	INTRON	INTRON	CAAP1	ENSG00000120159.13	ENST00000333916.8:ENST00000650615.1:ENST00000625311.1:ENST00000520187.1:ENST00000483493.6:ENST00000495958.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	39	2	4.55661	4.75816	4.95971	0.00927858	0.00663522	0.0855292	0.0703181
chr6	36476351	36476449	2854254	0	+	0.22449	[0,0.28]	chr6	269732	9	INTRON	INTRON	KCTD20	ENSG00000112078.14	ENST00000536244.5:ENST00000373731.7:ENST00000474988.5:ENST00000481911.5:ENST00000449081.6:ENST00000265344.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	94	2	3.78347	4.758115	5.73276	0.00156565	4.61323e-4	0.0360583	0.0194611
chr2	135602573	135602673	874667	0	+	0.39	(0.378,0.408]	chr2	97899	1	CDS_START	CDS_START:CDS:UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	R3HDM1	ENSG00000048991.17	ENST00000483021.5:ENST00000463230.5:ENST00000683871.1:ENST00000409478.5:ENST00000264160.8:ENST00000438014.5:ENST00000488035.5:ENST00000410054.5:ENST00000628915.2:ENST00000436436.5:ENST00000409606.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	81	2	4.2345	4.757415	5.28033	0.00143651	2.07828e-5	0.0340925	0.00353137
chr17	36578763	36578859	6602200	0	+	0.4375	(0.408,0.44]	chr17	642574	7	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	GGNBP2	ENSG00000278311.5	ENST00000613102.5:ENST00000617860.4:ENST00000618837.4:ENST00000619573.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	37	2	4.51604	4.757205000000001	4.99837	0.0137419	0.00131369	0.0949306	0.0333932
chr3	42573473	42573547	1670701	0	-	0.418919	(0.408,0.44]	chr3	170762	2	UTR5	UTR5:EXON_MRNA:INTRON	SEC22C	ENSG00000093183.14	ENST00000264454.8:ENST00000423701.6:ENST00000273156.11:ENST00000417572.5:ENST00000449617.5:ENST00000456515.5:ENST00000493107.5:ENST00000383750.8:ENST00000450981.5:ENST00000445388.5:ENST00000454141.5:ENST00000416880.5:ENST00000420163.1:ENST00000456222.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	37	2	4.51604	4.757205000000001	4.99837	0.0137419	0.00131369	0.0949306	0.0333932
chr3	119449238	119449336	1791838	0	-	0.438776	(0.408,0.44]	chr3	179934	17	INTRON	INTRON	TMEM39A	ENSG00000176142.13	ENST00000319172.10:ENST00000438581.6:ENST00000491685.5:ENST00000486159.5:ENST00000486235.5:ENST00000468676.5:ENST00000490099.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	37	2	4.51604	4.757205000000001	4.99837	0.0137419	0.00131369	0.0949306	0.0333932
chr1	51507602	51507702	454241	0	-	0.41	(0.408,0.44]	chr1	54447	259	INTRON	INTRON	EPS15	ENSG00000085832.17	ENST00000371733.8:ENST00000371730.6:ENST00000371727.5:ENST00000471391.1:ENST00000465467.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	37	2	4.62009	4.75668	4.89327	0.00504155	0.00458906	0.0646039	0.0595107
chr15	75488563	75488658	6224387	0	-	0.410526	(0.408,0.44]	chr15	594591	4	INTRON	INTRON	PTPN9	ENSG00000169410.11	ENST00000618819.5:ENST00000564970.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	37	2	4.62009	4.75668	4.89327	0.00504155	0.00458906	0.0646039	0.0595107
chr17	28069759	28069859	6582792	0	+	0.3	(0.28,0.32]	chr17	639837	78	INTRON	INTRON	NLK	ENSG00000087095.13	ENST00000407008.8:ENST00000496808.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	40	2	4.4263	4.75626	5.08622	0.0330296	0.00227525	0.133816	0.0437013
chr4	67651902	67652001	2153960	0	-	0.292929	(0.28,0.32]	chr4	212133	23	INTRON	INTRON	UBA6	ENSG00000033178.13	ENST00000322244.10	protein_coding	protein_coding	protein_coding	protein_coding	0	40	2	4.4263	4.75626	5.08622	0.0330296	0.00227525	0.133816	0.0437013
chr7	6261984	6262084	3477278	0	-	0.29	(0.28,0.32]	chr7	325332	494	INTRON	INTRON	CYTH3	ENSG00000008256.16	ENST00000396741.3:ENST00000350796.8:ENST00000482460.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	40	2	4.4263	4.75626	5.08622	0.0330296	0.00227525	0.133816	0.0437013
chr17	32450422	32450522	6598403	0	+	0.46	(0.44,0.476]	chr17	641971	30	INTRON	INTRON	PSMD11	ENSG00000108671.11	ENST00000578213.5:ENST00000649012.1:ENST00000457654.6:ENST00000578397.5:ENST00000579451.1:ENST00000261712.8:ENST00000580904.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	76	2	3.93585	4.7562	5.57655	3.3967e-4	1.04728e-4	0.0170719	0.00863456
chr5	146153480	146153556	2747109	0	-	0.289474	(0.28,0.32]	chr5	258841	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	LARS1	ENSG00000133706.19	ENST00000674174.1:ENST00000674170.1:ENST00000674479.1:ENST00000674309.1:ENST00000674218.1:ENST00000674467.1:ENST00000674290.1:ENST00000674447.1:ENST00000674270.1:ENST00000674383.1:ENST00000674191.1:ENST00000674158.1:ENST00000394434.7:ENST00000674398.1:ENST00000674277.1:ENST00000274562.13:ENST00000510191.5:ENST00000674310.1:ENST00000512412.2:ENST00000674417.1:ENST00000674450.1:ENST00000674412.1:ENST00000618084.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	40	2	4.52233	4.7555250000000004	4.98872	0.0129279	0.00838468	0.0990564	0.0774402
chr9	65706432	65706528	4132129	0	+	0.28125	(0.28,0.32]	chr9	376519	1	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	CBWD5	ENSG00000147996.17	ENST00000377392.9:ENST00000377389.5:ENST00000476161.5:ENST00000497250.5:ENST00000480229.5:ENST00000430059.6:ENST00000382405.8:ENST00000429800.6:ENST00000486221.5:ENST00000465474.5:ENST00000377395.8:ENST00000476797.5:ENST00000496364.6:ENST00000489273.1:ENST00000485088.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	40	2	4.52233	4.7555250000000004	4.98872	0.0129279	0.00838468	0.0990564	0.0774402
chr15	83029542	83029622	6249058	0	-	0.5375	(0.515,0.57]	chr15	596391	1	EXON_LNCRNA	EXON_LNCRNA:INTRON	BTBD1	ENSG00000064726.10	ENST00000261721.9:ENST00000379403.2:ENST00000559652.5:ENST00000558344.1:ENST00000560015.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	37	2	4.28921	4.75531	5.22141	0.00990051	6.44141e-4	0.0877296	0.0231685
chr2	199338885	199338985	1308049	0	-	0.37	(0.35,0.378]	chr2	136850	96	INTRON	INTRON	SATB2	ENSG00000119042.17	ENST00000614512.4:ENST00000417098.6:ENST00000260926.9:ENST00000443023.5:ENST00000428695.5:ENST00000457245.5	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.48184	4.7550799999999995	5.02832	0.0191702	0.00156444	0.108861	0.0365263
chrX	134466996	134467095	7724138	0	+	0.353535	(0.35,0.378]	chrX	790154	61	INTRON	INTRON	HPRT1	ENSG00000165704.15	ENST00000298556.8:ENST00000462974.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	38	2	4.48184	4.7550799999999995	5.02832	0.0191702	0.00156444	0.108861	0.0365263
chr1	21161467	21161567	393476	0	-	0.37	(0.35,0.378]	chr1	46836	485	INTRON	INTRON	EIF4G3	ENSG00000075151.24	ENST00000374935.7:ENST00000602326.6:ENST00000685872.1:ENST00000686579.1:ENST00000688741.1:ENST00000400422.6:ENST00000634879.2:ENST00000693470.1:ENST00000685814.1:ENST00000356916.7:ENST00000682284.1:ENST00000438975.5:ENST00000411888.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	40	2	4.29961	4.754895	5.21018	0.0158483	0.00228003	0.109464	0.0426265
chr14	101895755	101895854	5819864	0	+	0.353535	(0.35,0.378]	chr14	551917	8	INTRON	INTRON	PPP2R5C	ENSG00000078304.20	ENST00000694906.1:ENST00000422945.6:ENST00000328724.9:ENST00000350249.7:ENST00000334743.9:ENST00000445439.7:ENST00000557095.5:ENST00000556218.5:ENST00000557534.1:ENST00000557716.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	40	2	4.29961	4.754895	5.21018	0.0158483	0.00228003	0.109464	0.0426265
chr1	88825185	88825285	157195	0	+	0.39	(0.378,0.408]	chr1	17128	4	INTRON	INTRON	PKN2	ENSG00000065243.20	ENST00000370521.8:ENST00000370513.9:ENST00000449189.1	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	4.66338	4.754825	4.84627	0.0103469	0.00254319	0.0850389	0.0465056
chr15	41238007	41238106	6003929	0	+	0.393939	(0.378,0.408]	chr15	571190	34	INTRON	INTRON	CHP1	ENSG00000187446.12	ENST00000558351.5:ENST00000560411.5:ENST00000560784.5:ENST00000392151.6:ENST00000561280.5:ENST00000334660.10:ENST00000560397.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	37	2	4.66338	4.754825	4.84627	0.0103469	0.00254319	0.0850389	0.0465056
chr17	15507882	15507982	6731906	0	-	0.39	(0.378,0.408]	chr17	660295	5	INTRON	INTRON	TVP23C-CDRT4:TVP23C	ENSG00000259024.6:ENSG00000175106.17	ENST00000522212.6:ENST00000557349.5:ENST00000481756.7:ENST00000518506.4:ENST00000225576.7:ENST00000581273.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	37	2	4.66338	4.754825	4.84627	0.0103469	0.00254319	0.0850389	0.0465056
chrX	121196138	121196238	7715151	0	+	0.38	(0.378,0.408]	chrX	789390	99	INTRON	INTRON	ENSG00000286163	ENSG00000286163.1	ENST00000651788.1	lncRNA	lncRNA	lncRNA	lncRNA	0	37	2	4.66338	4.754825	4.84627	0.0103469	0.00254319	0.0850389	0.0465056
chr8	144403064	144403163	4085884	0	-	0.353535	(0.35,0.378]	chr8	371910	10	INTRON	INTRON	CPSF1	ENSG00000071894.17	ENST00000616140.2:ENST00000620219.4:ENST00000531042.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	38	2	4.58537	4.75446	4.92355	0.00703328	0.00573514	0.0754576	0.0657377
chr20	62945109	62945208	7299589	0	+	0.575758	(0.57,1]	chr20	742734	3	UTR3	UTR3:EXON_MRNA	GID8	ENSG00000101193.8	ENST00000266069.5	protein_coding	protein_coding	protein_coding	protein_coding	1	52	2	3.80923	4.754255	5.69928	1.11529e-4	2.48853e-6	0.00945289	0.00100001
chr1	245908236	245908336	674706	0	-	0.32	(0.28,0.32]	chr1	79681	440	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000366517.5:ENST00000366516.5:ENST00000490107.6:ENST00000470510.5:ENST00000493441.5:ENST00000488153.5:ENST00000492487.5:ENST00000391836.3:ENST00000464398.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	95	2	3.63276	4.754005	5.87525	0.00114475	8.91612e-5	0.0308149	0.00793468
chr4	84226617	84226717	2187479	0	-	0.48	(0.476,0.515]	chr4	214872	770	INTRON	INTRON	ENSG00000250546	ENSG00000250546.6	ENST00000513489.5:ENST00000508406.1:ENST00000657959.1:ENST00000668493.1	lncRNA	lncRNA	lncRNA	lncRNA	1	76	2	3.62464	4.754005	5.88337	5.079e-4	7.59355e-5	0.0202328	0.00777694
chr10	118683449	118683549	4703690	0	-	0.48	(0.476,0.515]	chr10	433843	72	UTR3	UTR3:EXON_MRNA:INTRON	CACUL1	ENSG00000151893.15	ENST00000544392.5:ENST00000369151.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	80	2	3.64127	4.75336	5.86545	6.42302e-4	2.46461e-5	0.0231685	0.00389532
chr9	97991051	97991150	4173116	0	+	0.515152	(0.476,0.515]	chr9	380269	60	INTRON	INTRON	ANP32B	ENSG00000136938.9	ENST00000339399.5:ENST00000473205.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	292	2	4.70656	4.7532250000000005	4.79989	4.6866e-8	6.8432e-9	8.59876e-5	2.82262e-5
chr1	52852165	52852265	105000	0	+	0.55	(0.515,0.57]	chr1	13720	88	INTRON	INTRON	ZYG11A	ENSG00000203995.10	ENST00000371532.5:ENST00000612017.4:ENST00000371528.2	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.51	4.753175	4.99635	0.00809449	8.06602e-4	0.0766625	0.0258804
chr4	2694274	2694374	1914113	0	+	0.53	(0.515,0.57]	chr4	192069	4	SS5_PROX	SS5_PROX:INTRON	FAM193A	ENSG00000125386.16	ENST00000637812.2:ENST00000324666.9:ENST00000382839.7:ENST00000512465.5:ENST00000545951.5:ENST00000502458.5:ENST00000513898.5:ENST00000505311.5:ENST00000513350.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	35	2	4.51	4.753175	4.99635	0.00809449	8.06602e-4	0.0766625	0.0258804
chr17	82591819	82591918	6693340	0	+	0.474747	(0.44,0.476]	chr17	654683	42	INTRON	INTRON	FOXK2	ENSG00000141568.21	ENST00000473637.6:ENST00000335255.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	78	2	3.41176	4.753135	6.09451	0.00130987	3.01924e-5	0.0333932	0.00456171
chr14	101886820	101886919	5819768	0	+	0.464646	(0.44,0.476]	chr14	551895	29	INTRON	INTRON	PPP2R5C	ENSG00000078304.20	ENST00000694906.1:ENST00000422945.6:ENST00000328724.9:ENST00000350249.7:ENST00000557621.5:ENST00000334743.9:ENST00000445439.7:ENST00000557095.5:ENST00000554137.5:ENST00000556218.5:ENST00000557534.1:ENST00000557716.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	81	2	3.74925	4.75287	5.75649	4.08974e-4	4.17314e-5	0.0185763	0.00523306
chr2	27439565	27439665	717889	0	+	0.37	(0.35,0.378]	chr2	83315	4	SS3_PROX	SS3_PROX:INTRON	NRBP1	ENSG00000115216.14	ENST00000233557.7:ENST00000379852.8:ENST00000379863.7:ENST00000460499.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	41	2	4.08816	4.752155	5.41615	0.046021	3.21724e-4	0.149888	0.0159645
chr16	78536840	78536940	6397038	0	+	0.33	(0.32,0.35]	chr16	614809	6	INTRON	INTRON	WWOX	ENSG00000186153.18	ENST00000683929.1:ENST00000684632.1:ENST00000627394.3:ENST00000569332.5:ENST00000402655.6:ENST00000406884.6:ENST00000539474.6:ENST00000566780.6:ENST00000408984.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	40	2	4.37269	4.75196	5.13123	0.0154102	0.00394704	0.108569	0.0548259
chr6	3137853	3137940	2788800	0	+	0.333333	(0.32,0.35]	chr6	263401	4	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	BPHL	ENSG00000137274.13	ENST00000434640.5:ENST00000430655.6:ENST00000424847.6:ENST00000433912.5:ENST00000380379.10:ENST00000490918.5:ENST00000380368.6:ENST00000380375.4:ENST00000488487.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	40	2	4.37269	4.75196	5.13123	0.0154102	0.00394704	0.108569	0.0548259
chr16	84975455	84975553	6533800	0	-	0.459184	(0.44,0.476]	chr16	633102	14	UTR3	UTR3:EXON_MRNA	ZDHHC7	ENSG00000153786.13	ENST00000313732.9:ENST00000344861.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	121	2	2.96367	4.75194	6.54021	2.39417e-4	2.67389e-6	0.0136403	0.00115578
chr2	152733159	152733255	894398	0	+	0.354167	(0.35,0.378]	chr2	99120	7	EXON_MRNA	EXON_MRNA:INTRON	ARL6IP6	ENSG00000177917.12	ENST00000690727.1:ENST00000685752.1:ENST00000688293.1:ENST00000686839.1:ENST00000689155.1:ENST00000691702.1:ENST00000691523.1:ENST00000688012.1:ENST00000687504.1:ENST00000455875.6:ENST00000692124.1:ENST00000693573.1:ENST00000692399.1:ENST00000425034.6:ENST00000686080.1:ENST00000326446.10:ENST00000463690.2:ENST00000688130.1:ENST00000495469.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	39	2	4.40128	4.7517700000000005	5.10226	0.0120289	0.00327038	0.0962115	0.0508595
chr7	825060	825160	3268550	0	+	0.53	(0.515,0.57]	chr7	303534	72	INTRON	INTRON	SUN1	ENSG00000164828.18	ENST00000452783.6:ENST00000389574.7:ENST00000457378.6:ENST00000450538.5:ENST00000427969.5:ENST00000435699.5:ENST00000440380.5:ENST00000439679.5:ENST00000424128.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	36	2	4.399	4.75174	5.10448	0.00708863	0.0010345	0.0754923	0.029231300000000002
chr7	11073947	11074047	3283612	0	+	0.54	(0.515,0.57]	chr7	304989	110	INTRON	INTRON	PHF14	ENSG00000106443.17	ENST00000642461.1:ENST00000634607.2:ENST00000403050.7:ENST00000521747.5:ENST00000423760.6:ENST00000481418.5:ENST00000470665.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	36	2	4.399	4.75174	5.10448	0.00708863	0.0010345	0.0754923	0.029231300000000002
chr1	23050620	23050720	44073	0	+	0.18	[0,0.28]	chr1	5271	1	SS5_PROX	SS5_PROX:INTRON	KDM1A	ENSG00000004487.18	ENST00000692214.1:ENST00000686934.1:ENST00000689853.1:ENST00000465864.2:ENST00000691256.1:ENST00000688122.1:ENST00000692056.1:ENST00000692853.1:ENST00000689366.1:ENST00000686270.1:ENST00000685102.1:ENST00000690627.1:ENST00000686771.1:ENST00000692209.1:ENST00000686339.1:ENST00000691813.1:ENST00000693156.1:ENST00000688235.1:ENST00000692975.1:ENST00000687202.1:ENST00000691682.1:ENST00000691404.1:ENST00000691694.1:ENST00000688680.1:ENST00000356634.7:ENST00000400181.9:ENST00000481879.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	41	2	4.46726	4.751469999999999	5.03568	0.0427997	0.00446141	0.148082	0.0610799
chr15	44452790	44452890	6014603	0	+	0.23	[0,0.28]	chr15	572914	243	INTRON	INTRON	CTDSPL2	ENSG00000137770.14	ENST00000558791.5:ENST00000260327.9:ENST00000560834.1:ENST00000558966.5:ENST00000559793.5:ENST00000558968.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	41	2	4.46726	4.751469999999999	5.03568	0.0427997	0.00446141	0.148082	0.0610799
chr4	163516748	163516840	2078382	0	+	0.206522	[0,0.28]	chr4	205417	8	INTRON	INTRON	TMA16	ENSG00000198498.10	ENST00000509657.5:ENST00000513272.5:ENST00000513134.5:ENST00000358572.10:ENST00000508268.1:ENST00000506214.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	41	2	4.46726	4.751469999999999	5.03568	0.0427997	0.00446141	0.148082	0.0610799
chr7	158819250	158819350	3689711	0	-	0.24	[0,0.28]	chr7	342421	198	INTRON	INTRON	ESYT2	ENSG00000117868.18	ENST00000251527.10:ENST00000275418.13:ENST00000652148.1:ENST00000483958.5:ENST00000497111.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	41	2	4.46726	4.751469999999999	5.03568	0.0427997	0.00446141	0.148082	0.0610799
chrX	77634161	77634251	7845922	0	-	0.2	[0,0.28]	chrX	800094	6	UTR5	UTR5:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ATRX	ENSG00000085224.23	ENST00000373344.11:ENST00000395603.7:ENST00000480283.5:ENST00000675732.1:ENST00000675908.1:ENST00000623242.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	41	2	4.46726	4.751469999999999	5.03568	0.0427997	0.00446141	0.148082	0.0610799
chr15	82500786	82500886	6247257	0	-	0.37	(0.35,0.378]	chr15	596152	225	INTRON	INTRON	GOLGA2P10	ENSG00000255769.7	ENST00000618004.4:ENST00000614347.4:ENST00000618267.4:ENST00000612379.4:ENST00000619738.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	8	427	2	3.83897	4.75128	5.66359	1.61558e-8	8.73706e-9	4.53341e-5	2.51142e-5
chr15	44469469	44469569	6014771	0	+	0.25	[0,0.28]	chr15	572922	99	INTRON	INTRON	CTDSPL2	ENSG00000137770.14	ENST00000558791.5:ENST00000260327.9:ENST00000560834.1:ENST00000558966.5:ENST00000559793.5:ENST00000558968.1:ENST00000558373.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	43	2	4.20106	4.75108	5.3011	0.0695895	0.00185843	0.184298	0.039946
chr21	33579762	33579862	7441626	0	-	0.27	[0,0.28]	chr21	759541	2	SS3_PROX	SS3_PROX:INTRON	DONSON	ENSG00000159147.18	ENST00000303113.10:ENST00000453626.5:ENST00000303071.10:ENST00000457359.5:ENST00000417871.5:ENST00000442660.5:ENST00000444517.5:ENST00000437395.5:ENST00000432378.5:ENST00000440810.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	43	2	4.20106	4.75108	5.3011	0.0695895	0.00185843	0.184298	0.039946
chr9	128973349	128973449	4208120	0	+	0.4	(0.378,0.408]	chr9	385307	1	SS5_PROX	SS5_PROX:INTRON	NUP188	ENSG00000095319.14	ENST00000372577.2	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	4.58427	4.751015000000001	4.91776	0.0128325	0.00196368	0.0926667	0.0411469
chr1	23974873	23974973	402110	0	-	0.27	[0,0.28]	chr1	48287	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	SRSF10	ENSG00000188529.15	ENST00000492112.3:ENST00000344989.10:ENST00000341154.10:ENST00000453840.7:ENST00000484146.6:ENST00000473858.5:ENST00000374452.9:ENST00000374453.7:ENST00000343255.9:ENST00000485841.5:ENST00000338597.9:ENST00000495785.1:ENST00000473754.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	41	2	4.55618	4.750895	4.94561	0.0171034	0.0150263	0.110899	0.0994339
chr5	131779733	131779832	2720572	0	-	0.232323	[0,0.28]	chr5	255730	347	INTRON	INTRON	FNIP1	ENSG00000217128.13	ENST00000510461.6:ENST00000307954.12:ENST00000307968.11:ENST00000511848.1	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	4.55618	4.750895	4.94561	0.0171034	0.0150263	0.110899	0.0994339
chr7	111324784	111324884	3621730	0	-	0.28	[0,0.28]	chr7	337093	3609	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	41	2	4.55618	4.750895	4.94561	0.0171034	0.0150263	0.110899	0.0994339
chr12	125137164	125137264	5246195	0	+	0.38	(0.378,0.408]	chr12	498841	3	SS5_PROX	SS5_PROX:INTRON	AACS	ENSG00000081760.17	ENST00000316519.11:ENST00000316543.14:ENST00000539251.5:ENST00000545511.5:ENST00000543665.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	37	2	4.69169	4.750685000000001	4.80968	0.00679828	0.00432302	0.0711802	0.0599409
chr17	75677734	75677834	6676078	0	+	0.38	(0.378,0.408]	chr17	651838	55	INTRON	INTRON	SAP30BP	ENSG00000161526.15	ENST00000583170.5:ENST00000584667.6:ENST00000355423.7:ENST00000578354.5:ENST00000577292.5:ENST00000542343.5:ENST00000579877.5:ENST00000293208.13:ENST00000579864.5:ENST00000583737.5:ENST00000578288.5:ENST00000580484.5:ENST00000582022.5:ENST00000580322.5:ENST00000583536.5:ENST00000578909.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	37	2	4.69169	4.750685000000001	4.80968	0.00679828	0.00432302	0.0711802	0.0599409
chr17	80657395	80657495	6685913	0	+	0.39	(0.378,0.408]	chr17	653415	132	INTRON	INTRON	RPTOR	ENSG00000141564.15	ENST00000574767.5:ENST00000577161.5:ENST00000306801.8:ENST00000649732.1:ENST00000570891.5:ENST00000544334.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	37	2	4.69169	4.750685000000001	4.80968	0.00679828	0.00432302	0.0711802	0.0599409
chr18	50381728	50381828	6900474	0	+	0.53	(0.515,0.57]	chr18	683676	2	SS3_PROX	SS3_PROX:INTRON	SKA1	ENSG00000154839.10	ENST00000398452.6:ENST00000417656.6:ENST00000285116.8:ENST00000488454.5:ENST00000494518.1	protein_coding	protein_coding	protein_coding	protein_coding	1	69	2	3.84625	4.750495	5.65474	1.34155e-4	9.00945e-5	0.00998237	0.00844245
chr16	29610210	29610310	6471703	0	-	0.49	(0.476,0.515]	chr16	625301	154	INTRON	INTRON	ENSG00000288632	ENSG00000288632.1	ENST00000675579.1	lncRNA	lncRNA	lncRNA	lncRNA	6	167	2	2.73539	4.75026	6.76513	7.3112e-5	5.85597e-7	0.00713767	4.48872e-4
chr10	69143829	69143929	4444747	0	+	0.49	(0.476,0.515]	chr10	410023	104	INTRON	INTRON	VPS26A	ENSG00000122958.15	ENST00000373382.5:ENST00000395098.5:ENST00000489656.5:ENST00000263559.11:ENST00000497564.5:ENST00000490696.5:ENST00000467852.1:ENST00000489794.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	37	2	4.44128	4.749874999999999	5.05847	0.0151924	0.00108081	0.0994339	0.0300133
chr15	65774671	65774770	6209620	0	-	0.131313	[0,0.28]	chr15	592617	74	INTRON	INTRON	DENND4A	ENSG00000174485.16	ENST00000443035.8:ENST00000431932.6:ENST00000564674.5:ENST00000568515.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	43	2	4.28915	4.7498450000000005	5.21054	0.0319595	0.00758653	0.14477	0.0749063
chr4	88751235	88751334	2199885	0	-	0.353535	(0.35,0.378]	chr4	215911	2	INTRON	INTRON	FAM13A	ENSG00000138640.15	ENST00000395002.6:ENST00000264344.10:ENST00000511573.5:ENST00000503556.5:ENST00000511976.5:ENST00000508369.5:ENST00000513837.5:ENST00000504836.5:ENST00000507352.1:ENST00000515155.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	79	2	3.69928	4.749375000000001	5.79947	3.94786e-4	2.36402e-4	0.0178567	0.0140941
chr12	1742107	1742207	5064680	0	+	0.48	(0.476,0.515]	chr12	477870	112	INTRON	INTRON	ADIPOR2	ENSG00000006831.10	ENST00000537545.1:ENST00000357103.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	37	2	4.526	4.749264999999999	4.97253	0.00699701	0.00311573	0.0754576	0.0498063
chr3	12486352	12486447	1367295	0	+	0.484211	(0.476,0.515]	chr3	143968	8	INTRON	INTRON	TSEN2	ENSG00000154743.19	ENST00000681482.1:ENST00000446004.6:ENST00000679699.1:ENST00000681713.1:ENST00000680458.1:ENST00000680923.1:ENST00000679670.1:ENST00000680817.1:ENST00000412698.3:ENST00000455118.6:ENST00000680765.1:ENST00000415684.6:ENST00000681343.1:ENST00000679424.1:ENST00000680126.1:ENST00000679756.1:ENST00000475595.2:ENST00000681433.1:ENST00000680376.1:ENST00000680873.1:ENST00000681073.1:ENST00000679537.1:ENST00000454502.6:ENST00000284995.11:ENST00000402228.7:ENST00000680275.1:ENST00000679995.1:ENST00000681676.1:ENST00000473755.5:ENST00000679492.1:ENST00000681042.1:ENST00000680857.1:ENST00000679690.1:ENST00000679555.1:ENST00000681140.1:ENST00000679425.1:ENST00000680264.1:ENST00000680449.1:ENST00000681471.1:ENST00000680598.1:ENST00000679693.1:ENST00000679876.1:ENST00000444864.6:ENST00000679367.1:ENST00000681268.1:ENST00000680421.1:ENST00000680555.1:ENST00000679785.1:ENST00000679835.1:ENST00000680943.1:ENST00000681227.1:ENST00000680419.1:ENST00000680172.1:ENST00000490981.2:ENST00000680986.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	37	2	4.526	4.749264999999999	4.97253	0.00699701	0.00311573	0.0754576	0.0498063
chr8	128064386	128064485	3862789	0	+	0.50505	(0.476,0.515]	chr8	355563	143	INTRON	INTRON	PVT1	ENSG00000249859.13	ENST00000667305.1:ENST00000690350.1:ENST00000653522.1:ENST00000661830.1:ENST00000657289.1:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000657211.1:ENST00000653845.1:ENST00000651587.1:ENST00000692980.1:ENST00000654324.1:ENST00000657693.1:ENST00000666080.1:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000662410.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000657356.1:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000667714.1:ENST00000654105.1:ENST00000664995.1:ENST00000670714.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000668123.1:ENST00000666776.1:ENST00000659912.1:ENST00000670532.1:ENST00000523068.2:ENST00000671088.1:ENST00000663461.1:ENST00000513868.6:ENST00000692433.1:ENST00000523190.7:ENST00000685606.1:ENST00000690788.1:ENST00000685634.1:ENST00000653990.1:ENST00000655783.1:ENST00000656411.1:ENST00000664742.1:ENST00000655099.1:ENST00000662709.1:ENST00000512617.7:ENST00000660122.1:ENST00000666452.1:ENST00000659666.1:ENST00000659892.1:ENST00000521600.5:ENST00000522875.5:ENST00000653497.1:ENST00000668098.1:ENST00000659106.1:ENST00000666147.1:ENST00000658350.1:ENST00000656999.1:ENST00000664610.1:ENST00000671092.1:ENST00000653853.1:ENST00000652492.1:ENST00000658429.1:ENST00000660781.1:ENST00000660912.1:ENST00000650930.1:ENST00000663715.1:ENST00000652883.1:ENST00000657844.1:ENST00000660659.1:ENST00000661391.1:ENST00000660146.1:ENST00000671587.1:ENST00000658018.1:ENST00000666878.1:ENST00000652993.1:ENST00000658305.1:ENST00000656077.1:ENST00000666039.1:ENST00000668619.1:ENST00000668479.1:ENST00000660069.1:ENST00000658158.1:ENST00000652728.1:ENST00000653608.1:ENST00000669509.1:ENST00000522414.2:ENST00000670535.1:ENST00000670009.1:ENST00000668215.1:ENST00000668351.1:ENST00000657682.1:ENST00000657945.1:ENST00000658065.1:ENST00000655148.1:ENST00000666223.1:ENST00000666105.1:ENST00000668480.1	lncRNA	lncRNA	lncRNA	lncRNA	0	37	2	4.526	4.749264999999999	4.97253	0.00699701	0.00311573	0.0754576	0.0498063
chr14	102009493	102009580	5820713	0	+	0.390805	(0.378,0.408]	chr14	552120	3	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	DYNC1H1	ENSG00000197102.14	ENST00000360184.10:ENST00000684561.1:ENST00000680313.1:ENST00000679720.1:ENST00000680715.1:ENST00000681283.1:ENST00000681822.1:ENST00000679910.1:ENST00000681574.1:ENST00000645039.2:ENST00000645149.2:ENST00000680200.1:ENST00000680120.1:ENST00000644881.2:ENST00000681066.1:ENST00000680423.1:ENST00000681536.1:ENST00000679486.1:ENST00000681010.1:ENST00000679629.1:ENST00000681123.1:ENST00000680874.1:ENST00000680137.1:ENST00000643508.2:ENST00000680808.1:ENST00000681311.1:ENST00000681859.1:ENST00000643684.1:ENST00000645114.2:ENST00000643764.1:ENST00000643565.1:ENST00000644206.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	39	2	4.32174	4.749005	5.17627	0.0132362	0.00208234	0.0999551	0.0411801
chr2	54993894	54993994	1120838	0	-	0.34	(0.32,0.35]	chr2	120142	58	INTRON	INTRON	RTN4	ENSG00000115310.19	ENST00000394609.6:ENST00000404909.5:ENST00000394611.6:ENST00000317610.11:ENST00000357732.8:ENST00000337526.11:ENST00000357376.7:ENST00000405240.5:ENST00000438462.1	protein_coding	protein_coding	protein_coding	protein_coding	0	42	2	4.06299	4.748794999999999	5.4346	0.0559439	4.09682e-4	0.165463	0.0181306
chr16	791562	791658	6273845	0	+	0.59375	(0.57,1]	chr16	599128	3	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CHTF18	ENSG00000127586.17	ENST00000631357.2:ENST00000262315.14:ENST00000464728.5:ENST00000455171.6:ENST00000317063.10:ENST00000440239.5:ENST00000471202.5:ENST00000569270.5:ENST00000567620.1:ENST00000565787.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	146	2	3.8788	4.748530000000001	5.61826	1.49898e-7	4.3046e-11	1.76521e-4	5.88809e-7
chr12	64492863	64492946	5153839	0	+	0.457831	(0.44,0.476]	chr12	488009	4	INTRON	INTRON	TBK1	ENSG00000183735.11	ENST00000676684.1:ENST00000677499.1:ENST00000677641.1:ENST00000676654.1:ENST00000652537.1:ENST00000676809.1:ENST00000650790.1:ENST00000652657.1:ENST00000676912.1:ENST00000677686.1:ENST00000652389.1:ENST00000331710.10:ENST00000651262.1:ENST00000677632.1:ENST00000650997.1:ENST00000678180.1:ENST00000676930.1:ENST00000650762.1:ENST00000650786.1:ENST00000677831.1:ENST00000651014.1:ENST00000651878.1:ENST00000678197.1:ENST00000650708.1:ENST00000677435.1:ENST00000676587.1:ENST00000678567.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	37	2	4.43377	4.7483249999999995	5.06288	0.0162803	0.00102416	0.101453	0.0294041
chr6	157942935	157943032	3016988	0	+	0.319588	(0.28,0.32]	chr6	281462	2	UTR3	UTR3:EXON_MRNA	SNX9	ENSG00000130340.17	ENST00000680863.1:ENST00000679814.1:ENST00000680464.1:ENST00000681186.1:ENST00000679732.1:ENST00000681651.1:ENST00000680089.1:ENST00000680078.1:ENST00000680974.1:ENST00000681138.1:ENST00000392185.8:ENST00000679790.1:ENST00000680495.1:ENST00000679691.1:ENST00000681469.1:ENST00000680680.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	139	2	3.01425	4.748295	6.48234	2.70987e-4	3.28303e-5	0.0146168	0.00483531
chr3	143021825	143021910	1529288	0	+	0.388235	(0.378,0.408]	chr3	159375	3	SS5_PROX	SS5_PROX:INTRON	U2SURP	ENSG00000163714.18	ENST00000488497.7:ENST00000473835.7:ENST00000461591.5:ENST00000493598.6:ENST00000463563.6:ENST00000488587.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	40	2	4.10661	4.748044999999999	5.38948	0.0399023	2.85992e-4	0.143072	0.0150568
chr7	91978637	91978736	3351394	0	+	0.232323	[0,0.28]	chr7	312192	43	INTRON	INTRON	AKAP9	ENSG00000127914.19	ENST00000680534.1:ENST00000680513.1:ENST00000680072.1:ENST00000679821.1:ENST00000679554.1:ENST00000356239.8:ENST00000679521.1:ENST00000680181.1:ENST00000681722.1:ENST00000680766.1:ENST00000679448.1:ENST00000681412.1:ENST00000680047.1:ENST00000679474.1:ENST00000680952.1:ENST00000679457.1:ENST00000679722.1:ENST00000680074.1:ENST00000493453.1:ENST00000394564.5:ENST00000674381.2:ENST00000359028.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	42	2	4.29536	4.748035	5.20071	0.0590175	0.00261806	0.167915	0.0470772
chr18	80111507	80111605	6938110	0	+	0.285714	(0.28,0.32]	chr18	686188	11	INTRON	INTRON	ADNP2	ENSG00000101544.9	ENST00000262198.9:ENST00000560752.5:ENST00000559951.5	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	4.66359	4.7476199999999995	4.83165	0.0193496	0.00527257	0.108861	0.0656295
chr6	34995321	34995420	2850343	0	+	0.292929	(0.28,0.32]	chr6	269278	5	INTRON	INTRON	ANKS1A	ENSG00000064999.15	ENST00000360359.5:ENST00000649117.1	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	4.66359	4.7476199999999995	4.83165	0.0193496	0.00527257	0.108861	0.0656295
chr6	107884837	107884937	3182094	0	-	0.3	(0.28,0.32]	chr6	296380	13	INTRON	INTRON	SEC63	ENSG00000025796.14	ENST00000369002.9	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	4.66359	4.7476199999999995	4.83165	0.0193496	0.00527257	0.108861	0.0656295
chr7	138463701	138463801	3434675	0	+	0.29	(0.28,0.32]	chr7	319959	20	INTRON	INTRON	TRIM24	ENSG00000122779.18	ENST00000343526.9:ENST00000415680.6:ENST00000497516.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	39	2	4.66359	4.7476199999999995	4.83165	0.0193496	0.00527257	0.108861	0.0656295
chr15	65711496	65711596	6208970	0	-	0.31	(0.28,0.32]	chr15	592533	49	INTRON	INTRON	DENND4A	ENSG00000174485.16	ENST00000443035.8:ENST00000431932.6:ENST00000635620.2:ENST00000564674.5	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	4.73474	4.7475249999999996	4.76031	0.0162835	0.00656106	0.101453	0.0735539
chr3	183760620	183760717	1580929	0	+	0.298969	(0.28,0.32]	chr3	163092	13	INTRON	INTRON	YEATS2	ENSG00000163872.16	ENST00000305135.10	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	4.73474	4.7475249999999996	4.76031	0.0162835	0.00656106	0.101453	0.0735539
chr6	147217760	147217860	2988841	0	+	0.29	(0.28,0.32]	chr6	280001	113	INTRON	INTRON	STXBP5	ENSG00000164506.15	ENST00000321680.11:ENST00000367481.7:ENST00000546097.5:ENST00000367480.7	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	4.73474	4.7475249999999996	4.76031	0.0162835	0.00656106	0.101453	0.0735539
chr7	17937487	17937586	3496537	0	-	0.30303	(0.28,0.32]	chr7	326520	298	INTRON	INTRON	SNX13	ENSG00000071189.21	ENST00000428135.7:ENST00000611725.4:ENST00000409076.6:ENST00000444712.5:ENST00000482558.5:ENST00000409604.1:ENST00000475800.5:ENST00000474067.5:ENST00000471744.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	41	2	4.2432	4.747305	5.25141	0.0479043	0.00125199	0.153019	0.0328543
chr6	31198059	31198137	2842521	0	+	0.628205	(0.57,1]	chr6	267429	2	SS5_PROX	SS5_PROX:INTRON	HCG27	ENSG00000206344.8	ENST00000383331.4:ENST00000638546.1	lncRNA	lncRNA	lncRNA	lncRNA	2	66	2	3.50161	4.74711	5.99261	3.17447e-5	5.25293e-7	0.00449886	4.21981e-4
chr21	10339536	10339630	7427416	0	-	0.159574	[0,0.28]	chr21	757675	6	INTRON	INTRON	ENSG00000277693	ENSG00000277693.2	ENST00000622592.1:ENST00000616952.1:ENST00000667012.1	lncRNA	lncRNA	lncRNA	lncRNA	0	42	2	4.38376	4.747045	5.11033	0.0258536	0.00991388	0.133676	0.0838372
chr2	134952240	134952340	872584	0	+	0.29	(0.28,0.32]	chr2	97704	2	SS3_PROX	SS3_PROX:INTRON	CCNT2	ENSG00000082258.13	ENST00000419781.5:ENST00000446247.5:ENST00000264157.10:ENST00000452839.5:ENST00000295238.10:ENST00000452521.1:ENST00000438691.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	42	2	4.14214	4.747015	5.35189	0.0579756	8.52844e-4	0.167723	0.0264928
chr21	36058715	36058815	7458706	0	-	0.29	(0.28,0.32]	chr21	760017	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	SETD4	ENSG00000185917.14	ENST00000399212.5:ENST00000332131.9:ENST00000481477.5:ENST00000399215.5:ENST00000399201.5:ENST00000399208.6:ENST00000399205.5:ENST00000399207.5:ENST00000424303.5:ENST00000429161.5:ENST00000446166.5:ENST00000442559.5:ENST00000443703.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	42	2	4.14214	4.747015	5.35189	0.0579756	8.52844e-4	0.167723	0.0264928
chr6	107947292	107947392	3182738	0	-	0.3	(0.28,0.32]	chr6	296463	174	INTRON	INTRON	SEC63	ENSG00000025796.14	ENST00000369002.9:ENST00000429168.1:ENST00000484803.5:ENST00000446496.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	42	2	4.14214	4.747015	5.35189	0.0579756	8.52844e-4	0.167723	0.0264928
chr2	61461364	61461463	1130460	0	-	0.282828	(0.28,0.32]	chr2	121499	402	INTRON	INTRON	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000453133.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	86	2	3.65016	4.74627	5.84238	6.39301e-4	5.0114e-4	0.0228666	0.0206993
chr20	21310245	21310345	7248206	0	+	0.3	(0.28,0.32]	chr20	735885	64	INTRON	INTRON	XRN2	ENSG00000088930.8	ENST00000377191.5	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	4.33863	4.746105	5.15358	0.0207276	0.0052282	0.122348	0.0633615
chr2	216116040	216116137	1014410	0	+	0.28866000000000003	(0.28,0.32]	chr2	107943	26	INTRON	INTRON	XRCC5	ENSG00000079246.16	ENST00000392133.7:ENST00000429133.5:ENST00000476360.1:ENST00000392132.7:ENST00000417391.1:ENST00000451695.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	94	2	3.54995	4.7456	5.94125	0.00157396	6.50094e-5	0.0361918	0.00668837
chr8	90349041	90349141	3793584	0	+	0.32	(0.28,0.32]	chr8	351786	1019	INTRON	INTRON	LINC00534	ENSG00000253394.7	ENST00000662145.1:ENST00000655523.1:ENST00000517400.6:ENST00000658299.1:ENST00000663329.1:ENST00000658342.1:ENST00000523283.6:ENST00000655219.1:ENST00000662692.1:ENST00000667296.1:ENST00000667565.1:ENST00000523406.2:ENST00000659030.1:ENST00000653734.1:ENST00000654785.1:ENST00000524361.5:ENST00000668745.1:ENST00000666641.2:ENST00000661519.1:ENST00000671657.1:ENST00000655123.1:ENST00000663098.1:ENST00000670903.1:ENST00000654946.1	lncRNA	lncRNA	lncRNA	lncRNA	0	42	2	4.23719	4.745535	5.25388	0.0264147	0.00385849	0.133676	0.0542786
chr1	93084011	93084110	162586	0	+	0.272727	[0,0.28]	chr1	17567	26	INTRON	INTRON	MTF2	ENSG00000143033.18	ENST00000540243.5:ENST00000545708.5:ENST00000474314.6:ENST00000370298.9:ENST00000473430.5:ENST00000494963.5:ENST00000471953.5:ENST00000370303.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	94	2	3.3753	4.745340000000001	6.11538	0.00242466	4.03843e-4	0.0454587	0.0185763
chr3	15841588	15841688	1624263	0	-	0.34	(0.32,0.35]	chr3	168034	269	INTRON	INTRON	ANKRD28	ENSG00000206560.12	ENST00000399451.6:ENST00000412318.5:ENST00000439830.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	89	2	3.42026	4.74522	6.07018	0.00219805	1.93822e-5	0.0417893	0.00338472
chr15	64529950	64530050	6044783	0	+	0.54	(0.515,0.57]	chr15	575696	270	INTRON	INTRON	ZNF609	ENSG00000180357.10	ENST00000326648.5:ENST00000558680.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	109	2	3.20527	4.745085	6.2849	4.73488e-5	2.79922e-6	0.00562068	0.00118618
chr15	63707627	63707726	6199609	0	-	0.585859	(0.57,1]	chr15	591306	4	INTRON	INTRON	HERC1	ENSG00000103657.14	ENST00000443617.7:ENST00000561400.1	protein_coding	protein_coding	protein_coding	protein_coding	1	54	2	4.28563	4.744795	5.20396	5.65393e-5	5.27255e-6	0.00613846	0.00170345
chr21	38108723	38108823	7463973	0	-	0.46	(0.44,0.476]	chr21	760303	90	INTRON	INTRON	DSCR4	ENSG00000184029.9	ENST00000398948.5:ENST00000328264.7:ENST00000482032.1	lncRNA	lncRNA	lncRNA	lncRNA	2	100	2	3.45381	4.74455	6.03529	7.90762e-5	4.06961e-5	0.00739361	0.00539487
chr1	50823657	50823757	450889	0	-	0.34	(0.32,0.35]	chr1	54261	216	INTRON	INTRON	FAF1	ENSG00000185104.21	ENST00000396153.7:ENST00000487898.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	38	2	4.6938	4.7443100000000005	4.79482	0.0137794	0.00447781	0.0949306	0.0610799
chr2	45558091	45558191	1112822	0	-	0.34	(0.32,0.35]	chr2	119321	40	INTRON	INTRON	SRBD1	ENSG00000068784.13	ENST00000263736.5:ENST00000493649.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	38	2	4.6938	4.7443100000000005	4.79482	0.0137794	0.00447781	0.0949306	0.0610799
chr8	60574660	60574758	3758385	0	+	0.326531	(0.32,0.35]	chr8	349516	22	INTRON	INTRON	RAB2A	ENSG00000104388.15	ENST00000531289.5:ENST00000262646.12:ENST00000529579.5:ENST00000466595.5:ENST00000429861.5:ENST00000534260.5:ENST00000525529.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	38	2	4.6938	4.7443100000000005	4.79482	0.0137794	0.00447781	0.0949306	0.0610799
chrX	123662545	123662645	7878340	0	-	0.34	(0.32,0.35]	chrX	802527	168	INTRON	INTRON	THOC2	ENSG00000125676.20	ENST00000245838.13:ENST00000355725.8:ENST00000491737.5	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.6938	4.7443100000000005	4.79482	0.0137794	0.00447781	0.0949306	0.0610799
chr1	86875676	86875776	498725	0	-	0.34	(0.32,0.35]	chr1	59184	72	INTRON	INTRON	SELENOF	ENSG00000183291.18	ENST00000331835.10:ENST00000370554.5:ENST00000648872.1:ENST00000469566.5:ENST00000401030.4:ENST00000497861.5:ENST00000467557.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	39	2	4.36755	4.74427	5.12099	0.0300552	0.00143632	0.129138	0.0347139
chr4	105411235	105411334	2216048	0	-	0.333333	(0.32,0.35]	chr4	217232	49	INTRON	INTRON	PPA2	ENSG00000138777.20	ENST00000341695.10:ENST00000348706.9:ENST00000509031.5:ENST00000351450.10:ENST00000354147.7:ENST00000432483.6:ENST00000515567.5:ENST00000503171.5:ENST00000510015.5:ENST00000509426.5:ENST00000508518.5:ENST00000514209.5:ENST00000506815.5:ENST00000457404.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	39	2	4.36755	4.74427	5.12099	0.0300552	0.00143632	0.129138	0.0347139
chr9	37306712	37306811	4119528	0	+	0.343434	(0.32,0.35]	chr9	375411	6	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000461038.5:ENST00000488607.5:ENST00000463625.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	39	2	4.36755	4.74427	5.12099	0.0300552	0.00143632	0.129138	0.0347139
chrX	155920180	155920280	7741190	0	+	0.35	(0.32,0.35]	chrX	792647	3	SS5_PROX	SS5_PROX:INTRON	VAMP7	ENSG00000124333.16	ENST00000286448.12:ENST00000479687.6:ENST00000488344.6:ENST00000463317.6:ENST00000262640.11:ENST00000460621.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	39	2	4.36755	4.74427	5.12099	0.0300552	0.00143632	0.129138	0.0347139
chr12	70311915	70312015	5167130	0	+	0.3	(0.28,0.32]	chr12	489427	5	INTRON	INTRON	CNOT2	ENSG00000111596.14	ENST00000418359.7:ENST00000552319.5:ENST00000550160.5:ENST00000551661.5:ENST00000551132.5:ENST00000548021.5:ENST00000550641.6:ENST00000229195.8:ENST00000552915.5:ENST00000549443.5:ENST00000552483.5:ENST00000547321.5:ENST00000553020.5:ENST00000548159.5:ENST00000549750.5:ENST00000551043.5:ENST00000548599.5:ENST00000550194.5:ENST00000551873.5:ENST00000547867.5:ENST00000552151.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	39	2	4.58875	4.744185	4.89962	0.0230574	0.00425206	0.118056	0.0595557
chr15	57092690	57092790	6033858	0	+	0.29	(0.28,0.32]	chr15	574689	4	INTRON	INTRON	TCF12	ENSG00000140262.18	ENST00000438423.6:ENST00000267811.9:ENST00000333725.10:ENST00000560190.5:ENST00000559609.5:ENST00000557843.5:ENST00000557947.5:ENST00000561152.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	39	2	4.58875	4.744185	4.89962	0.0230574	0.00425206	0.118056	0.0595557
chr4	57021295	57021395	1964376	0	+	0.3	(0.28,0.32]	chr4	197187	3	SS5_PROX	SS5_PROX:INTRON	POLR2B	ENSG00000047315.17	ENST00000381227.5:ENST00000431623.6:ENST00000441246.6:ENST00000314595.6:ENST00000478188.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	39	2	4.58875	4.744185	4.89962	0.0230574	0.00425206	0.118056	0.0595557
chr8	98657617	98657717	3998475	0	-	0.29	(0.28,0.32]	chr8	366070	60	INTRON	INTRON	STK3	ENSG00000104375.17	ENST00000617590.1:ENST00000419617.7:ENST00000523601.5:ENST00000518165.5:ENST00000521649.5:ENST00000424861.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	39	2	4.58875	4.744185	4.89962	0.0230574	0.00425206	0.118056	0.0595557
chr3	172150369	172150468	1560658	0	+	0.474747	(0.44,0.476]	chr3	161551	14	INTRON	INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000421757.5:ENST00000469491.5:ENST00000336824.8:ENST00000423424.5:ENST00000416957.5:ENST00000478016.1:ENST00000443501.1:ENST00000476794.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	75	2	3.8307	4.744015	5.65733	2.3957e-4	1.81621e-4	0.0142132	0.0117212
chr7	135482389	135482489	3648684	0	-	0.47	(0.44,0.476]	chr7	339187	436	INTRON	INTRON	CNOT4	ENSG00000080802.20	ENST00000541284.6:ENST00000451834.5:ENST00000423368.6:ENST00000361528.8:ENST00000428680.6:ENST00000315544.6:ENST00000491203.5:ENST00000498534.5:ENST00000465721.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	75	2	3.8307	4.744015	5.65733	2.3957e-4	1.81621e-4	0.0142132	0.0117212
chr12	71848493	71848592	5169278	0	+	0.282828	(0.28,0.32]	chr12	489691	69	INTRON	INTRON	TBC1D15	ENSG00000121749.16	ENST00000482439.6:ENST00000550746.5:ENST00000485960.7:ENST00000462788.6:ENST00000319106.12:ENST00000491063.5:ENST00000472611.6:ENST00000549402.5:ENST00000474468.5:ENST00000498482.5:ENST00000468049.2:ENST00000546932.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	39	2	4.68527	4.74391	4.80255	0.0137406	0.00819419	0.0949306	0.0810802
chr13	19715980	19716080	5552270	0	-	0.29	(0.28,0.32]	chr13	530696	60	INTRON	INTRON	PSPC1	ENSG00000121390.19	ENST00000471658.5:ENST00000492741.5:ENST00000635562.1:ENST00000338910.9:ENST00000619300.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	39	2	4.68527	4.74391	4.80255	0.0137406	0.00819419	0.0949306	0.0810802
chr2	222938436	222938534	1022016	0	+	0.295918	(0.28,0.32]	chr2	109357	34	INTRON	INTRON	ACSL3	ENSG00000123983.15	ENST00000392066.7:ENST00000407441.5:ENST00000680251.1:ENST00000679541.1:ENST00000681906.1:ENST00000679545.1:ENST00000679932.1:ENST00000680100.1:ENST00000680475.1:ENST00000680525.1:ENST00000680420.1:ENST00000681326.1:ENST00000681292.1:ENST00000680395.1:ENST00000680736.1:ENST00000680147.1:ENST00000357430.8:ENST00000681009.1:ENST00000679514.1:ENST00000681697.1:ENST00000680921.1:ENST00000681383.1:ENST00000679558.1:ENST00000680684.1:ENST00000680424.1:ENST00000495541.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	39	2	4.68527	4.74391	4.80255	0.0137406	0.00819419	0.0949306	0.0810802
chr20	50750882	50750980	7286870	0	+	0.285714	(0.28,0.32]	chr20	741306	5	UTR3	UTR3:EXON_MRNA:INTRON	PARD6B	ENSG00000124171.9	ENST00000371610.7:ENST00000396039.1	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	4.68527	4.74391	4.80255	0.0137406	0.00819419	0.0949306	0.0810802
chr4	25266345	25266444	1933228	0	+	0.282828	(0.28,0.32]	chr4	194086	21	INTRON	INTRON	PI4K2B	ENSG00000038210.14	ENST00000512921.4:ENST00000264864.8	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	4.68527	4.74391	4.80255	0.0137406	0.00819419	0.0949306	0.0810802
chr12	57378258	57378358	5338730	0	-	0.38	(0.378,0.408]	chr12	510710	369	INTRON	INTRON	R3HDM2	ENSG00000179912.21	ENST00000402412.6:ENST00000347140.7:ENST00000634871.1:ENST00000448732.1	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.42349	4.743805	5.06412	0.00992961	0.0030522	0.0877296	0.0493883
chr18	35621344	35621444	6890413	0	+	0.4	(0.378,0.408]	chr18	682836	292	INTRON	INTRON	GALNT1	ENSG00000141429.14	ENST00000586725.1:ENST00000269195.6:ENST00000591924.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	38	2	4.42349	4.743805	5.06412	0.00992961	0.0030522	0.0877296	0.0493883
chr2	227531555	227531637	1026260	0	+	0.414634	(0.408,0.44]	chr2	109594	4	SS5_PROX	SS5_PROX:INTRON	AGFG1	ENSG00000173744.18	ENST00000409979.6:ENST00000310078.13:ENST00000409315.5:ENST00000373671.7:ENST00000409171.5:ENST00000456594.1	protein_coding	protein_coding	protein_coding	protein_coding	1	76	2	4.00339	4.743774999999999	5.48416	5.43528e-4	7.25052e-5	0.0215026	0.00709818
chr21	5122600	5122700	7424431	0	-	0.5	(0.476,0.515]	chr21	757270	4	SS3_PROX	SS3_PROX:INTRON	ENSG00000280071	ENSG00000280071.4	ENST00000624810.3:ENST00000625036.3:ENST00000620528.5:ENST00000620015.4:ENST00000624120.3:ENST00000624648.3:ENST00000624748.2:ENST00000623810.2:ENST00000624714.3:ENST00000623390.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	80	2	3.2463	4.7434	6.2405	0.00262374	1.22785e-5	0.0470772	0.00278588
chr3	42645190	42645288	1406440	0	+	0.336735	(0.32,0.35]	chr3	147728	8	INTRON	INTRON	NKTR	ENSG00000114857.19	ENST00000429888.5:ENST00000232978.13:ENST00000490189.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	39	2	4.46758	4.743375	5.01917	0.0119306	0.0055659	0.0962115	0.0648867
chr11	93802864	93802962	4848943	0	+	0.397959	(0.378,0.408]	chr11	452330	5	INTRON	INTRON	MED17	ENSG00000042429.12	ENST00000640583.1:ENST00000640804.1:ENST00000638487.1:ENST00000639596.1:ENST00000251871.9:ENST00000640027.1:ENST00000639189.1:ENST00000525026.6:ENST00000533133.6:ENST00000639724.1:ENST00000639457.1:ENST00000640451.1:ENST00000507258.4:ENST00000640521.1:ENST00000638518.1:ENST00000638790.1:ENST00000639523.1:ENST00000640077.1:ENST00000529626.2:ENST00000525613.2:ENST00000640411.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	37	2	4.50056	4.743215	4.98587	0.015974	0.00152268	0.101453	0.0360297
chr15	68168276	68168375	6057104	0	+	0.383838	(0.378,0.408]	chr15	576602	31	INTRON	INTRON	PIAS1	ENSG00000033800.14	ENST00000249636.11:ENST00000545237.1	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	4.50056	4.743215	4.98587	0.015974	0.00152268	0.101453	0.0360297
chr17	50979445	50979545	6795555	0	-	0.39	(0.378,0.408]	chr17	670842	3	SS5_PROX	SS5_PROX:INTRON	SPAG9	ENSG00000008294.22	ENST00000262013.12:ENST00000510283.5:ENST00000505279.5:ENST00000357122.8:ENST00000513746.6:ENST00000511312.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	37	2	4.50056	4.743215	4.98587	0.015974	0.00152268	0.101453	0.0360297
chr14	37113784	37113884	5877425	0	-	0.4	(0.378,0.408]	chr14	558013	2384	INTRON	INTRON	SLC25A21	ENSG00000183032.12	ENST00000331299.6:ENST00000555449.5:ENST00000557611.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	37	2	4.60771	4.742665000000001	4.87762	0.00567576	0.00553849	0.0678837	0.0648867
chr20	41544229	41544329	7343799	0	-	0.38	(0.378,0.408]	chr20	748551	103	INTRON	INTRON	CHD6	ENSG00000124177.16	ENST00000373233.8:ENST00000373222.3:ENST00000482596.1:ENST00000440647.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	37	2	4.60771	4.742665000000001	4.87762	0.00567576	0.00553849	0.0678837	0.0648867
chr6	7140147	7140247	2798688	0	+	0.39	(0.378,0.408]	chr6	263728	1	SS3_PROX	SS3_PROX:INTRON	RREB1	ENSG00000124782.21	ENST00000379933.7:ENST00000491191.5:ENST00000471433.5:ENST00000379938.7:ENST00000467782.5:ENST00000349384.10:ENST00000334984.10:ENST00000475946.5:ENST00000483150.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	37	2	4.60771	4.742665000000001	4.87762	0.00567576	0.00553849	0.0678837	0.0648867
chr14	37157281	37157381	5877860	0	-	0.46	(0.44,0.476]	chr14	558013	2819	INTRON	INTRON	SLC25A21	ENSG00000183032.12	ENST00000331299.6:ENST00000555449.5:ENST00000557611.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	100	2	3.25222	4.742475	6.23273	2.39476e-4	1.47185e-5	0.0136403	0.00307878
chr5	39022935	39023035	2605133	0	-	0.33	(0.32,0.35]	chr5	247896	14	INTRON	INTRON	RICTOR	ENSG00000164327.13	ENST00000357387.8:ENST00000511516.5:ENST00000296782.9:ENST00000510711.5:ENST00000513566.1:ENST00000514735.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	38	2	4.7197	4.742355	4.76501	0.0114287	0.00568521	0.0886611	0.0678837
chr11	62829185	62829281	4961704	0	-	0.53125	(0.515,0.57]	chr11	467011	12	INTRON	INTRON	STX5	ENSG00000162236.13	ENST00000294179.8:ENST00000377897.8:ENST00000394690.5:ENST00000492066.5:ENST00000491231.5:ENST00000488303.5:ENST00000486437.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	72	2	3.62164	4.7423	5.86296	5.41944e-4	1.02967e-5	0.0215026	0.00235018
chr1	51262660	51262760	98441	0	+	0.37	(0.35,0.378]	chr1	13196	254	INTRON	INTRON	RNF11	ENSG00000123091.5	ENST00000242719.4:ENST00000494873.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	38	2	4.39303	4.7417750000000005	5.09052	0.0237246	0.00123501	0.118716	0.0326215
chr1	165666611	165666709	575199	0	-	0.357143	(0.35,0.378]	chr1	69777	11	INTRON	INTRON	ALDH9A1	ENSG00000143149.13	ENST00000354775.5	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.39303	4.7417750000000005	5.09052	0.0237246	0.00123501	0.118716	0.0326215
chr2	71120453	71120551	1154543	0	-	0.357143	(0.35,0.378]	chr2	123385	22	INTRON	INTRON	MCEE	ENSG00000124370.11	ENST00000413592.5:ENST00000244217.6	protein_coding	protein_coding	protein_coding	protein_coding	1	82	2	4.17192	4.74125	5.31058	0.00160599	3.38953e-5	0.0364977	0.0046443
chr1	47369900	47369998	97937	0	+	0.520408	(0.515,0.57]	chr1	13149	9	INTRON	INTRON	CMPK1	ENSG00000162368.14	ENST00000371873.10:ENST00000371871.8:ENST00000450808.2:ENST00000371870.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	151	2	2.86278	4.74099	6.6192	2.32879e-5	3.31621e-7	0.00378116	3.12285e-4
chr17	47454026	47454124	6789436	0	-	0.377551	(0.35,0.378]	chr17	669651	28	INTRON	INTRON	MRPL45P2	ENSG00000228782.8	ENST00000425159.7	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	38	2	4.49626	4.740935	4.98561	0.00917582	0.00474226	0.0855292	0.0600445
chr2	235541334	235541434	1041810	0	+	0.31	(0.28,0.32]	chr2	111222	164	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1:ENST00000402604.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	115	2	3.22222	4.740705	6.25919	4.01934e-4	9.00783e-5	0.0180102	0.00844245
chr11	43360908	43361008	4776563	0	+	0.3	(0.28,0.32]	chr11	441679	14	INTRON	INTRON	TTC17	ENSG00000052841.15	ENST00000039989.9:ENST00000299240.10:ENST00000534347.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	40	2	4.33765	4.74053	5.14341	0.039714	0.00185891	0.143072	0.039946
chr6	7122176	7122276	2798507	0	+	0.4	(0.378,0.408]	chr6	263723	131	INTRON	INTRON	RREB1	ENSG00000124782.21	ENST00000379933.7:ENST00000491191.5:ENST00000471433.5:ENST00000379938.7:ENST00000467782.5:ENST00000349384.10:ENST00000334984.10:ENST00000475946.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	174	2	4.56882	4.74047	4.91212	2.62346e-6	8.80819e-7	0.00103643	5.75788e-4
chr14	92140400	92140497	5807021	0	+	0.494845	(0.476,0.515]	chr14	550349	17	INTRON	INTRON	CPSF2	ENSG00000165934.13	ENST00000298875.9	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.32915	4.74029	5.15143	0.0124637	0.00166579	0.0973643	0.0369207
chr19	11935472	11935572	7019857	0	+	0.45	(0.44,0.476]	chr19	697884	98	INTRON	INTRON	ZNF700	ENSG00000196757.8	ENST00000622593.4:ENST00000254321.10	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.23755	4.7398299999999995	5.24211	0.0263357	4.87398e-4	0.122221	0.0199652
chr19	17239293	17239390	7151167	0	-	0.515464	(0.515,0.57]	chr19	722562	29	INTRON	INTRON	NR2F6	ENSG00000160113.6	ENST00000291442.4:ENST00000596878.1	protein_coding	protein_coding	protein_coding	protein_coding	2	96	2	3.16037	4.73974	6.31911	4.09074e-4	5.57818e-7	0.0185763	4.00823e-4
chr3	120075394	120075494	1795267	0	-	0.3	(0.28,0.32]	chr3	180286	7	INTRON	INTRON	GSK3B	ENSG00000082701.17	ENST00000264235.13:ENST00000316626.6:ENST00000678439.1:ENST00000650344.2:ENST00000677788.1:ENST00000678245.1:ENST00000677169.1:ENST00000677128.1:ENST00000677530.1:ENST00000677034.1:ENST00000679131.1:ENST00000676743.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	40	2	4.4334	4.739595	5.04579	0.0163355	0.00714672	0.109464	0.0723634
chr9	137561661	137561759	4377444	0	-	0.295918	(0.28,0.32]	chr9	403627	45	INTRON	INTRON	DPH7	ENSG00000148399.13	ENST00000277540.7:ENST00000479650.5:ENST00000467243.5:ENST00000497237.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	40	2	4.4334	4.739595	5.04579	0.0163355	0.00714672	0.109464	0.0723634
chrX	2374667	2374767	7744350	0	-	0.49	(0.476,0.515]	chrX	792947	363	INTRON	INTRON	DHRSX	ENSG00000169084.15	ENST00000334651.11:ENST00000412516.7:ENST00000444280.6:ENST00000441131.7:ENST00000478825.7:ENST00000430536.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	39	2	4.21964	4.739545	5.25945	0.0167715	0.00111445	0.110511	0.0306328
chr1	39365061	39365160	77566	0	+	0.474747	(0.44,0.476]	chr1	9959	30	INTRON	INTRON	MACF1	ENSG00000127603.32	ENST00000361689.7:ENST00000567887.5:ENST00000372915.8:ENST00000564288.6:ENST00000671089.2:ENST00000372925.6:ENST00000476350.1:ENST00000289893.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	39	2	4.12843	4.739375	5.35032	0.0337192	3.02713e-4	0.134145	0.0155054
chr22	19091187	19091287	7551702	0	-	0.48	(0.476,0.515]	chr22	771903	13	INTRON	INTRON	DGCR2	ENSG00000070413.20	ENST00000537045.5:ENST00000545799.5:ENST00000263196.12:ENST00000389262.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	107	2	3.3479	4.73916	6.13042	2.07787e-4	5.46446e-6	0.0131276	0.00162138
chr22	46293071	46293165	7533462	0	+	0.531915	(0.515,0.57]	chr22	770285	3	UTR3	UTR3:EXON_MRNA	TTC38	ENSG00000075234.17	ENST00000381031.8	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.50102	4.73912	4.97722	0.00510768	0.00168681	0.0646039	0.0370386
chr9	95146309	95146407	4290311	0	-	0.530612	(0.515,0.57]	chr9	394705	4	INTRON	INTRON	FANCC	ENSG00000158169.14	ENST00000289081.8:ENST00000375305.6:ENST00000649334.1:ENST00000490972.7:ENST00000649701.1:ENST00000696261.1:ENST00000493098.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	35	2	4.50102	4.73912	4.97722	0.00510768	0.00168681	0.0646039	0.0370386
chr12	76065175	76065275	5370023	0	-	0.24	[0,0.28]	chr12	512308	37	INTRON	INTRON	NAP1L1	ENSG00000187109.15	ENST00000618691.5:ENST00000552056.5:ENST00000393263.7:ENST00000431879.7:ENST00000552147.5:ENST00000547773.5:ENST00000544816.5:ENST00000542344.5:ENST00000535020.6:ENST00000549596.5:ENST00000552342.5:ENST00000547529.6:ENST00000548044.5:ENST00000550934.5:ENST00000551992.5:ENST00000548273.5:ENST00000551600.5:ENST00000547704.5:ENST00000551524.5:ENST00000549988.5:ENST00000547479.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	41	2	4.38387	4.73834	5.09281	0.0501911	0.00372534	0.156383	0.0561984
chr5	72896955	72897055	2387954	0	+	0.28	[0,0.28]	chr5	230473	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TNPO1	ENSG00000083312.19	ENST00000680533.1:ENST00000337273.10:ENST00000680025.1:ENST00000523768.5:ENST00000681711.1:ENST00000679378.1:ENST00000506351.6:ENST00000605210.1:ENST00000680111.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	41	2	4.38387	4.73834	5.09281	0.0501911	0.00372534	0.156383	0.0561984
chr16	47462666	47462763	6343314	0	+	0.319588	(0.28,0.32]	chr16	608845	1	UTR5	UTR5:EXON_MRNA:SS3_PROX:SS5_PROX:INTRON	PHKB	ENSG00000102893.17	ENST00000566037.6:ENST00000566044.5:ENST00000299167.12:ENST00000696809.1:ENST00000566721.1:ENST00000323584.10:ENST00000565424.2:ENST00000567402.5:ENST00000563376.5:ENST00000567200.1:ENST00000564873.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	158	2	2.85561	4.73793	6.62025	2.33841e-4	1.70645e-5	0.0135358	0.00330681
chr7	53778672	53778769	3533933	0	-	0.453608	(0.44,0.476]	chr7	329593	17	INTRON	INTRON	LINC01446	ENSG00000205628.5	ENST00000670902.1:ENST00000380970.2:ENST00000663138.2:ENST00000660945.1:ENST00000662931.1:ENST00000661502.1:ENST00000670945.1:ENST00000666213.1:ENST00000663312.1:ENST00000660413.1:ENST00000652440.1:ENST00000665927.1:ENST00000659794.1:ENST00000670507.1:ENST00000659481.1:ENST00000659250.1:ENST00000662259.1:ENST00000669638.1:ENST00000650830.1:ENST00000668489.1:ENST00000652104.1:ENST00000656718.1:ENST00000652029.1:ENST00000663872.1:ENST00000660958.1:ENST00000656885.1:ENST00000654050.1:ENST00000651858.1:ENST00000651506.1:ENST00000658338.1:ENST00000651951.1	lncRNA	lncRNA	lncRNA	lncRNA	0	39	2	4.22393	4.7378599999999995	5.25179	0.0162322	0.00124521	0.109464	0.0322969
chr1	246568285	246568385	350001	0	+	0.28	[0,0.28]	chr1	40488	11	INTRON	INTRON	CNST	ENSG00000162852.14	ENST00000483271.1:ENST00000366513.9:ENST00000366512.7:ENST00000366511.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	41	2	4.47254	4.737585	5.00263	0.020991	0.013055	0.122348	0.093385
chr16	29438492	29438579	6469910	0	-	0.252874	[0,0.28]	chr16	625029	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SMG1P6	ENSG00000254634.4	ENST00000532337.1	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	0	41	2	4.47254	4.737585	5.00263	0.020991	0.013055	0.122348	0.093385
chr16	47334408	47334508	6482428	0	-	0.28	[0,0.28]	chr16	626999	202	INTRON	INTRON	ITFG1	ENSG00000129636.13	ENST00000320640.11:ENST00000542691.5:ENST00000544001.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	41	2	4.47254	4.737585	5.00263	0.020991	0.013055	0.122348	0.093385
chr17	30140116	30140216	6587623	0	+	0.27	[0,0.28]	chr17	640563	120	INTRON	INTRON	NSRP1	ENSG00000126653.18	ENST00000540900.7:ENST00000612959.4:ENST00000247026.10:ENST00000577289.6:ENST00000584154.5:ENST00000394826.8:ENST00000475652.5:ENST00000584317.5:ENST00000583301.5:ENST00000585881.5:ENST00000467446.6:ENST00000580103.6:ENST00000581048.5:ENST00000588614.1:ENST00000589608.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	41	2	4.47254	4.737585	5.00263	0.020991	0.013055	0.122348	0.093385
chr5	38956961	38957056	2604443	0	-	0.284211	(0.28,0.32]	chr5	247775	9	INTRON	INTRON	RICTOR	ENSG00000164327.13	ENST00000357387.8:ENST00000511516.5:ENST00000296782.9:ENST00000503698.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	86	2	3.83973	4.737285	5.63484	0.00108324	2.68965e-4	0.0303015	0.0145349
chr16	29578612	29578712	6471386	0	-	0.31	(0.28,0.32]	chr16	625297	89	INTRON	INTRON	ENSG00000288632:SMG1P2	ENSG00000288632.1:ENSG00000205534.6	ENST00000675579.1:ENST00000566127.1	lncRNA	lncRNA	lncRNA:transcribed_unprocessed_pseudogene	lncRNA:transcribed_unprocessed_pseudogene	0	39	2	4.50981	4.737175000000001	4.96454	0.0275554	0.00344078	0.123904	0.0539802
chr7	152238009	152238107	3679289	0	-	0.285714	(0.28,0.32]	chr7	341567	17	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000473186.5:ENST00000679882.1:ENST00000681033.1:ENST00000679645.1:ENST00000684550.1:ENST00000489110.2:ENST00000683490.1:ENST00000680479.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	39	2	4.50981	4.737175000000001	4.96454	0.0275554	0.00344078	0.123904	0.0539802
chr9	87728490	87728584	4152001	0	+	0.297872	(0.28,0.32]	chr9	378698	2	EXON_MRNA	EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CTSL	ENSG00000135047.16	ENST00000678442.1:ENST00000679149.1:ENST00000679157.1:ENST00000676946.1:ENST00000676531.1:ENST00000677935.1:ENST00000677345.1:ENST00000677821.1:ENST00000678752.1:ENST00000677019.1:ENST00000343150.10:ENST00000678367.1:ENST00000677864.1:ENST00000482054.2:ENST00000342020.6:ENST00000677262.1:ENST00000678649.1:ENST00000679141.1:ENST00000676881.1:ENST00000340342.11:ENST00000495822.2:ENST00000677955.1:ENST00000676769.1:ENST00000679030.1:ENST00000678596.1:ENST00000676961.1:ENST00000676576.1:ENST00000678599.1:ENST00000677638.1:ENST00000677615.1:ENST00000679252.1:ENST00000676466.1:ENST00000677349.1:ENST00000677761.1:ENST00000678654.1:ENST00000676480.1:ENST00000678965.1:ENST00000676909.1:ENST00000679028.1:ENST00000678259.1:ENST00000679025.1:ENST00000677523.1:ENST00000375894.10	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	39	2	4.50981	4.737175000000001	4.96454	0.0275554	0.00344078	0.123904	0.0539802
chr13	95681335	95681435	5517237	0	+	0.4	(0.378,0.408]	chr13	527643	36	INTRON	INTRON	DNAJC3	ENSG00000102580.15	ENST00000602402.6:ENST00000376795.6	protein_coding	protein_coding	protein_coding	protein_coding	2	169	2	4.61587	4.736745	4.85762	5.24685e-6	3.71822e-7	0.00170345	3.13185e-4
chr1	99765871	99765949	515330	0	-	0.294872	(0.28,0.32]	chr1	60413	2	INTRON	INTRON	FRRS1	ENSG00000156869.14	ENST00000646001.2:ENST00000370176.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	39	2	4.6061	4.736705	4.86731	0.0116253	0.0102724	0.089002	0.0889104
chr12	108707769	108707869	5406548	0	-	0.29	(0.28,0.32]	chr12	516035	48	INTRON	INTRON	CORO1C	ENSG00000110880.11	ENST00000261401.8:ENST00000541050.5:ENST00000549384.5:ENST00000550542.5:ENST00000552871.5:ENST00000551550.5:ENST00000546571.5:ENST00000551044.1:ENST00000551059.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	39	2	4.6061	4.736705	4.86731	0.0116253	0.0102724	0.089002	0.0889104
chr13	41319788	41319882	5474302	0	+	0.308511	(0.28,0.32]	chr13	524441	5	INTRON	INTRON	NAA16	ENSG00000172766.19	ENST00000379406.8:ENST00000403412.7:ENST00000476980.5:ENST00000464857.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	39	2	4.6061	4.736705	4.86731	0.0116253	0.0102724	0.089002	0.0889104
chr14	102671997	102672097	5823327	0	+	0.32	(0.28,0.32]	chr14	552490	783	INTRON	INTRON	RCOR1	ENSG00000089902.10	ENST00000262241.7	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	4.6061	4.736705	4.86731	0.0116253	0.0102724	0.089002	0.0889104
chr1	171536970	171537066	253744	0	+	0.260417	[0,0.28]	chr1	30169	3	SS3_PROX	SS3_PROX:INTRON	PRRC2C	ENSG00000117523.18	ENST00000647382.2:ENST00000367742.7:ENST00000338920.8:ENST00000426496.6	protein_coding	protein_coding	protein_coding	protein_coding	0	40	2	4.69191	4.736665	4.78142	0.0269474	0.00943974	0.123442	0.0861183
chr14	61733024	61733111	5745095	0	+	0.229885	[0,0.28]	chr14	545312	1	INTRON	INTRON	HIF1A	ENSG00000100644.17	ENST00000337138.9:ENST00000394997.5:ENST00000323441.10:ENST00000539097.2:ENST00000557538.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	40	2	4.69191	4.736665	4.78142	0.0269474	0.00943974	0.123442	0.0861183
chr3	99875530	99875630	1462477	0	+	0.25	[0,0.28]	chr3	153488	571	INTRON	INTRON	CMSS1	ENSG00000184220.12	ENST00000463526.1:ENST00000421999.8:ENST00000491299.5:ENST00000496116.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	40	2	4.69191	4.736665	4.78142	0.0269474	0.00943974	0.123442	0.0861183
chr5	37359637	37359736	2602652	0	-	0.323232	(0.32,0.35]	chr5	247515	11	INTRON	INTRON	NUP155	ENSG00000113569.16	ENST00000231498.8:ENST00000381843.6:ENST00000513532.1	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.64046	4.736665	4.83287	0.0095071	0.00724767	0.0817766	0.0756327
chr1	202524867	202524967	294553	0	+	0.46	(0.44,0.476]	chr1	33886	221	INTRON	INTRON	PPP1R12B	ENSG00000077157.22	ENST00000391959.5:ENST00000608999.6:ENST00000290419.9:ENST00000491336.5:ENST00000466273.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	119	2	3.06553	4.735955000000001	6.40638	1.35514e-4	5.71935e-6	0.0100405	0.00177762
chr16	2592992	2593092	6279431	0	+	0.51	(0.476,0.515]	chr16	600689	57	INTRON	INTRON	PDPK1	ENSG00000140992.19	ENST00000441549.7:ENST00000268673.11:ENST00000342085.9:ENST00000389224.7	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.6932	4.73588	4.77856	0.00753088	0.00305743	0.074841	0.0509893
chr2	53874694	53874794	1119561	0	-	0.5	(0.476,0.515]	chr2	119870	2	SS3_PROX	SS3_PROX:INTRON	PSME4	ENSG00000068878.15	ENST00000404125.6:ENST00000389993.7:ENST00000476586.5:ENST00000466539.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	36	2	4.6932	4.73588	4.77856	0.00753088	0.00305743	0.074841	0.0509893
chr3	45606725	45606825	1416225	0	+	0.48	(0.476,0.515]	chr3	148594	101	INTRON	INTRON	LIMD1	ENSG00000144791.10	ENST00000465039.5:ENST00000440097.5:ENST00000273317.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	36	2	4.6932	4.73588	4.77856	0.00753088	0.00305743	0.074841	0.0509893
chr7	67007593	67007692	3326748	0	+	0.484848	(0.476,0.515]	chr7	309398	83	INTRON	INTRON	TYW1	ENSG00000198874.14	ENST00000442959.5:ENST00000359626.10:ENST00000475392.1:ENST00000361660.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	36	2	4.6932	4.73588	4.77856	0.00753088	0.00305743	0.074841	0.0509893
chr17	75230281	75230374	6674526	0	+	0.462366	(0.44,0.476]	chr17	651408	8	INTRON	INTRON	NUP85	ENSG00000125450.11	ENST00000245544.9:ENST00000579324.5:ENST00000581104.5:ENST00000579298.5:ENST00000578830.5:ENST00000579557.5:ENST00000577645.5:ENST00000583070.5:ENST00000580879.5:ENST00000540768.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	101	2	3.08877	4.73579	6.38281	5.52878e-4	6.52002e-6	0.021371	0.00193507
chr16	8108622	8108722	6441595	0	-	0.27	[0,0.28]	chr16	620351	1010	INTRON	INTRON	ENSG00000260289	ENSG00000260289.2	ENST00000670665.1:ENST00000654046.1:ENST00000567103.2	lncRNA	lncRNA	lncRNA	lncRNA	0	45	2	4.07901	4.735615	5.39222	0.0494049	0.00453865	0.174117	0.0595107
chr2	20302777	20302877	1076294	0	-	0.33	(0.32,0.35]	chr2	114994	47	INTRON	INTRON	PUM2	ENSG00000055917.16	ENST00000338086.9:ENST00000361078.7:ENST00000440577.5	protein_coding	protein_coding	protein_coding	protein_coding	0	43	2	3.94529	4.735455	5.52562	0.0693433	2.76065e-4	0.184298	0.0147997
chr1	91016649	91016749	502474	0	-	0.21	[0,0.28]	chr1	59504	339	INTRON	INTRON	ZNF644	ENSG00000122482.22	ENST00000370440.5:ENST00000337393.10:ENST00000347275.9:ENST00000361321.5:ENST00000467231.5:ENST00000498303.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	40	2	4.62084	4.735075	4.84931	0.0313633	0.00779241	0.13151	0.0787356
chr17	82797902	82798002	6694667	0	+	0.24	[0,0.28]	chr17	654870	1	SS5_PROX	SS5_PROX:INTRON	TBCD	ENSG00000141556.22	ENST00000682479.1:ENST00000682722.1:ENST00000684464.1:ENST00000684544.1:ENST00000681983.1:ENST00000684361.1:ENST00000683184.1:ENST00000683282.1:ENST00000684408.1:ENST00000355528.9:ENST00000683444.1:ENST00000684776.1:ENST00000683041.1:ENST00000684760.1:ENST00000684349.1:ENST00000682213.1:ENST00000683009.1:ENST00000682921.1:ENST00000682107.1:ENST00000539345.6:ENST00000684000.1:ENST00000684188.1:ENST00000684429.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	40	2	4.71017	4.7349049999999995	4.75964	0.0232081	0.0114708	0.118148	0.0956037
chr3	43673622	43673722	1675968	0	-	0.23	[0,0.28]	chr3	171074	202	INTRON	INTRON	ANO10	ENSG00000160746.13	ENST00000413397.5:ENST00000439141.5:ENST00000428831.1:ENST00000436073.1:ENST00000495772.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	40	2	4.71017	4.7349049999999995	4.75964	0.0232081	0.0114708	0.118148	0.0956037
chrX	48903652	48903746	7815543	0	-	0.255319	[0,0.28]	chrX	796761	3	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SLC35A2	ENSG00000102100.16	ENST00000635285.1:ENST00000247138.11:ENST00000376521.6:ENST00000376529.8:ENST00000635628.1:ENST00000635460.1:ENST00000445167.7:ENST00000413561.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	40	2	4.71017	4.7349049999999995	4.75964	0.0232081	0.0114708	0.118148	0.0956037
chr4	126466741	126466841	2235376	0	-	0.28	[0,0.28]	chr4	219023	12	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	2	128	2	3.54731	4.73466	5.92201	8.17983e-4	1.08476e-4	0.0264086	0.00880907
chr6	42663062	42663157	2866089	0	+	0.178947	[0,0.28]	chr6	271190	4	SS3_PROX	SS3_PROX:INTRON	UBR2	ENSG00000024048.11	ENST00000372899.6:ENST00000372901.2	protein_coding	protein_coding	protein_coding	protein_coding	2	124	2	3.20629	4.734500000000001	6.26271	5.56536e-4	2.29235e-4	0.0214853	0.0138892
chr11	130075136	130075236	4885760	0	+	0.46	(0.44,0.476]	chr11	456911	40	INTRON	INTRON	APLP2	ENSG00000084234.18	ENST00000650012.1:ENST00000533616.5:ENST00000532456.5:ENST00000534761.5:ENST00000338167.10:ENST00000528499.5:ENST00000529701.1:ENST00000526330.5:ENST00000534001.1:ENST00000527702.5:ENST00000534582.5:ENST00000529235.5:ENST00000533713.5:ENST00000533618.5:ENST00000533195.5:ENST00000530132.5:ENST00000533532.5:ENST00000263574.9:ENST00000345598.9:ENST00000278756.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	36	2	4.68564	4.734285	4.78293	0.00816201	0.00292033	0.0766625	0.0494641
chr12	912221	912319	5255101	0	-	0.469388	(0.44,0.476]	chr12	500056	6	UTR3	UTR3:EXON_MRNA	RAD52	ENSG00000002016.18	ENST00000358495.8:ENST00000228345.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	36	2	4.68564	4.734285	4.78293	0.00816201	0.00292033	0.0766625	0.0494641
chr16	3848099	3848199	6435760	0	-	0.45	(0.44,0.476]	chr16	619576	347	INTRON	INTRON	CREBBP	ENSG00000005339.15	ENST00000262367.10:ENST00000382070.7:ENST00000636895.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	36	2	4.68564	4.734285	4.78293	0.00816201	0.00292033	0.0766625	0.0494641
chr2	62347710	62347809	790805	0	+	0.464646	(0.44,0.476]	chr2	88712	13	INTRON	INTRON	ENSG00000228541	ENSG00000228541.2	ENST00000689590.1:ENST00000687402.1:ENST00000687773.1	lncRNA	lncRNA	lncRNA	lncRNA	0	36	2	4.68564	4.734285	4.78293	0.00816201	0.00292033	0.0766625	0.0494641
chr7	111014153	111014253	3618623	0	-	0.47	(0.44,0.476]	chr7	337093	502	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	36	2	4.68564	4.734285	4.78293	0.00816201	0.00292033	0.0766625	0.0494641
chr1	35899401	35899500	70812	0	+	0.353535	(0.35,0.378]	chr1	9067	38	INTRON	INTRON	AGO1	ENSG00000092847.13	ENST00000373206.5:ENST00000373204.6:ENST00000674426.1:ENST00000674304.1:ENST00000635259.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	37	2	4.64457	4.73417	4.82377	0.012652	0.00325499	0.0926667	0.0524329
chr1	236277374	236277474	665112	0	-	0.37	(0.35,0.378]	chr1	78741	18	INTRON	INTRON	ERO1B	ENSG00000086619.15	ENST00000354619.10:ENST00000689343.1:ENST00000691519.1:ENST00000686625.1:ENST00000366589.1:ENST00000687604.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	37	2	4.64457	4.73417	4.82377	0.012652	0.00325499	0.0926667	0.0524329
chr11	83073230	83073329	4840438	0	+	0.363636	(0.35,0.378]	chr11	451463	13	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RAB30-DT	ENSG00000246067.9	ENST00000656330.1:ENST00000658004.1:ENST00000527627.5:ENST00000669459.2:ENST00000689041.1:ENST00000526795.1:ENST00000501011.8:ENST00000663168.1:ENST00000533528.1:ENST00000655468.1:ENST00000533708.1:ENST00000669058.1:ENST00000528156.1:ENST00000530270.2:ENST00000658917.1	lncRNA	lncRNA	lncRNA	lncRNA	0	37	2	4.64457	4.73417	4.82377	0.012652	0.00325499	0.0926667	0.0524329
chr2	177501622	177501722	927195	0	+	0.37	(0.35,0.378]	chr2	101879	15	INTRON	INTRON	AGPS	ENSG00000018510.18	ENST00000679459.1:ENST00000637633.2:ENST00000680770.1:ENST00000680705.1:ENST00000681752.1:ENST00000681565.1:ENST00000680893.1:ENST00000681032.1:ENST00000679421.1:ENST00000409888.1:ENST00000642466.2:ENST00000264167.11:ENST00000680155.1:ENST00000679478.1:ENST00000681449.1:ENST00000681891.1:ENST00000681028.1:ENST00000680028.1:ENST00000679994.1:ENST00000680390.1:ENST00000681300.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	37	2	4.64457	4.73417	4.82377	0.012652	0.00325499	0.0926667	0.0524329
chr1	6548671	6548770	368062	0	-	0.222222	[0,0.28]	chr1	43225	31	INTRON	INTRON	NOL9	ENSG00000162408.11	ENST00000377705.6	protein_coding	protein_coding	protein_coding	protein_coding	1	92	2	3.54621	4.73411	5.92201	0.00124865	8.17983e-4	0.0328543	0.0264086
chrX	77991612	77991712	7685857	0	+	0.36	(0.35,0.378]	chrX	786878	9	INTRON	INTRON	ATP7A:PGK1	ENSG00000165240.22:ENSG00000102144.15	ENST00000693051.1:ENST00000341514.11:ENST00000688746.1:ENST00000688338.1:ENST00000685264.1:ENST00000686515.1:ENST00000687086.1:ENST00000689530.1:ENST00000686999.1:ENST00000644362.1:ENST00000343533.10:ENST00000686543.1:ENST00000686033.1:ENST00000692908.1:ENST00000686688.1:ENST00000686480.1:ENST00000689649.1:ENST00000686416.1:ENST00000682742.2:ENST00000685434.1:ENST00000693387.1:ENST00000688249.1:ENST00000686133.1:ENST00000645094.1:ENST00000689541.1:ENST00000693398.1:ENST00000692110.1:ENST00000689767.1:ENST00000687628.1:ENST00000691456.1:ENST00000687416.1:ENST00000689872.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	37	2	4.71953	4.734064999999999	4.7486	0.0103314	0.00418965	0.0850389	0.0591344
chr14	36302411	36302510	5872857	0	-	0.50505	(0.476,0.515]	chr14	557894	12	INTRON	INTRON	MBIP	ENSG00000151332.20	ENST00000416007.9:ENST00000318473.11:ENST00000359527.11:ENST00000604768.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	36	2	4.61402	4.733905	4.85379	0.00947755	0.00234214	0.0817766	0.0442989
chr7	130523032	130523131	3639493	0	-	0.50505	(0.476,0.515]	chr7	338574	140	INTRON	INTRON	COPG2	ENSG00000158623.14	ENST00000425248.5:ENST00000617523.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	36	2	4.61402	4.733905	4.85379	0.00947755	0.00234214	0.0817766	0.0442989
chr9	111927568	111927663	4184767	0	+	0.494737	(0.476,0.515]	chr9	381715	7	INTRON	INTRON	UGCG	ENSG00000148154.10	ENST00000374279.4:ENST00000495085.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	36	2	4.61402	4.733905	4.85379	0.00947755	0.00234214	0.0817766	0.0442989
chr1	224328411	224328508	644908	0	-	0.484536	(0.476,0.515]	chr1	76209	16	INTRON	INTRON	NVL	ENSG00000143748.18	ENST00000391875.6:ENST00000469968.5:ENST00000482491.5:ENST00000281701.11:ENST00000469075.5:ENST00000340871.8:ENST00000467882.5:ENST00000492281.5:ENST00000488718.5:ENST00000436927.5:ENST00000470989.5:ENST00000470903.5:ENST00000461466.5:ENST00000461546.2:ENST00000468673.5:ENST00000487758.5:ENST00000468088.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	36	2	4.69918	4.733725	4.76827	0.00600704	0.00400966	0.0674604	0.057767
chr2	20264158	20264258	1075900	0	-	0.5	(0.476,0.515]	chr2	114960	3	INTRON	INTRON	PUM2	ENSG00000055917.16	ENST00000338086.9:ENST00000361078.7:ENST00000440577.5	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.69918	4.733725	4.76827	0.00600704	0.00400966	0.0674604	0.057767
chr2	105283117	105283216	1199981	0	-	0.454545	(0.44,0.476]	chr2	128270	20	INTRON	INTRON	TGFBRAP1	ENSG00000135966.13	ENST00000595531.5:ENST00000393359.7:ENST00000258449.2	protein_coding	protein_coding	protein_coding	protein_coding	1	80	2	3.39322	4.733145	6.07307	0.00187283	7.17687e-6	0.0390476	0.00189988
chr2	46628093	46628193	770596	0	+	0.42	(0.408,0.44]	chr2	86971	40	UTR3	UTR3:EXON_MRNA	CRIPT	ENSG00000119878.6	ENST00000238892.4	protein_coding	protein_coding	protein_coding	protein_coding	1	80	2	3.52471	4.733065	5.94142	0.00112428	1.51568e-5	0.0306963	0.00293131
chr16	70512932	70513022	6511816	0	-	0.422222	(0.408,0.44]	chr16	630776	1	INTRON	INTRON	COG4	ENSG00000103051.20	ENST00000564415.6:ENST00000323786.10:ENST00000530314.5:ENST00000393612.8:ENST00000674443.1:ENST00000482252.5:ENST00000562200.5:ENST00000564653.6:ENST00000534772.1:ENST00000530160.2:ENST00000524584.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	80	2	3.59556	4.733015	5.87047	8.33275e-4	2.24671e-5	0.0266389	0.0036973
chr10	48307247	48307333	4430992	0	+	0.593023	(0.57,1]	chr10	408556	1	SS5_PROX	SS5_PROX:INTRON	MAPK8	ENSG00000107643.17	ENST00000395611.7:ENST00000432379.5:ENST00000374189.6:ENST00000429041.6:ENST00000374179.8:ENST00000426557.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	67	2	3.39829	4.7328	6.06731	6.42666e-5	1.59372e-7	0.00711194	1.84145e-4
chr1	223962573	223962673	643498	0	-	0.55	(0.515,0.57]	chr1	75993	3	SS3_PROX	SS3_PROX:INTRON	GTF2IP20	ENSG00000272645.4	ENST00000634905.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	1	69	2	3.58035	4.73263	5.88491	5.21239e-4	2.75856e-5	0.0204523	0.00430942
chr17	62549923	62550022	6653599	0	+	0.474747	(0.44,0.476]	chr17	649353	3	EXON_LNCRNA	EXON_LNCRNA:INTRON	TLK2:ENSG00000264546	ENSG00000146872.19:ENSG00000264546.1	ENST00000582809.5:ENST00000684213.1:ENST00000583843.5:ENST00000582195.6:ENST00000682085.1:ENST00000580705.5:ENST00000346027.10:ENST00000326270.13:ENST00000682203.1:ENST00000343388.11:ENST00000683536.1:ENST00000684440.1:ENST00000684772.1:ENST00000682274.1:ENST00000682827.1:ENST00000682075.1:ENST00000683104.1:ENST00000684012.1:ENST00000581041.5:ENST00000684553.1:ENST00000683737.1:ENST00000583426.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA:processed_transcript	0	36	2	4.60647	4.73232	4.85817	0.0102339	0.00223254	0.0850389	0.0435144
chr8	47954946	47955031	3945710	0	-	0.458824	(0.44,0.476]	chr8	361963	1	INTRON	INTRON	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7:ENST00000540819.1	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.60647	4.73232	4.85817	0.0102339	0.00223254	0.0850389	0.0435144
chr21	33449168	33449265	7440662	0	-	0.329897	(0.32,0.35]	chr21	759328	5	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TMEM50B	ENSG00000142188.17	ENST00000420455.5:ENST00000470682.5:ENST00000468874.2:ENST00000542230.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	307	2	4.53432	4.732105000000001	4.92989	1.50256e-6	1.00389e-8	8.03394e-4	3.51053e-5
chr1	16343772	16343871	382533	0	-	0.474747	(0.44,0.476]	chr1	44888	280	INTRON	INTRON	FBXO42	ENSG00000037637.11	ENST00000375592.8	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	4.33899	4.732060000000001	5.12513	0.0206616	7.96486e-4	0.110999	0.0258804
chr21	44791193	44791293	7468625	0	-	0.36	(0.35,0.378]	chr21	761177	27	INTRON	INTRON	UBE2G2	ENSG00000184787.19	ENST00000345496.7:ENST00000497630.5:ENST00000477954.5:ENST00000491513.5:ENST00000330942.9:ENST00000478200.1:ENST00000497664.5:ENST00000462569.5:ENST00000490450.5:ENST00000496395.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	80	2	3.41139	4.731895	6.0524	0.00143263	7.64013e-5	0.0347139	0.0078038
chr2	169954549	169954649	909437	0	+	0.4	(0.378,0.408]	chr2	100344	41	INTRON	INTRON	UBR3	ENSG00000144357.18	ENST00000272793.11:ENST00000430321.5:ENST00000392632.6:ENST00000487689.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	37	2	4.41169	4.7313	5.05091	0.0199606	0.00118558	0.109608	0.031662
chr21	29037563	29037653	7390098	0	+	0.388889	(0.378,0.408]	chr21	752988	1	SS5_PROX	SS5_PROX:INTRON	USP16	ENSG00000156256.15	ENST00000399975.7:ENST00000334352.8:ENST00000474835.5:ENST00000399976.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	37	2	4.41169	4.7313	5.05091	0.0199606	0.00118558	0.109608	0.031662
chr1	51254266	51254366	98357	0	+	0.44	(0.408,0.44]	chr1	13196	170	INTRON	INTRON	RNF11	ENSG00000123091.5	ENST00000242719.4:ENST00000494873.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	36	2	4.67894	4.73121	4.78348	0.0087648	0.00290352	0.0788605	0.0494641
chr1	226942979	226943079	328588	0	+	0.42	(0.408,0.44]	chr1	37904	20	INTRON	INTRON	COQ8A	ENSG00000163050.18	ENST00000366778.5:ENST00000366777.4:ENST00000478406.5:ENST00000489044.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	36	2	4.67894	4.73121	4.78348	0.0087648	0.00290352	0.0788605	0.0494641
chr15	40984548	40984644	6151882	0	-	0.4375	(0.408,0.44]	chr15	585237	2	SS3_PROX	SS3_PROX:INTRON	INO80	ENSG00000128908.18	ENST00000648947.1:ENST00000401393.7:ENST00000558357.6:ENST00000559995.2:ENST00000560799.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	36	2	4.67894	4.73121	4.78348	0.0087648	0.00290352	0.0788605	0.0494641
chr17	34996373	34996473	6599219	0	+	0.44	(0.408,0.44]	chr17	642158	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	LIG3	ENSG00000005156.12	ENST00000378526.9:ENST00000262327.9:ENST00000590630.5:ENST00000586058.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	36	2	4.67894	4.73121	4.78348	0.0087648	0.00290352	0.0788605	0.0494641
chr18	3448597	3448697	6867082	0	+	0.44	(0.408,0.44]	chr18	680315	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	TGIF1	ENSG00000177426.22	ENST00000552383.5:ENST00000401449.5:ENST00000550958.5:ENST00000548489.6:ENST00000618001.4:ENST00000549780.5	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.67894	4.73121	4.78348	0.0087648	0.00290352	0.0788605	0.0494641
chr8	67124756	67124856	3777258	0	+	0.43	(0.408,0.44]	chr8	350363	12	INTRON	INTRON	CSPP1	ENSG00000104218.16	ENST00000676113.1:ENST00000675306.2:ENST00000678156.1:ENST00000262210.11:ENST00000678017.1:ENST00000675869.1:ENST00000678542.1:ENST00000677619.1:ENST00000676605.1:ENST00000676471.1:ENST00000677256.1:ENST00000676847.1:ENST00000677009.1:ENST00000675820.1:ENST00000676317.1:ENST00000677592.1:ENST00000676573.1:ENST00000678318.1:ENST00000677473.1:ENST00000674993.1:ENST00000678553.1:ENST00000679226.1:ENST00000676882.1:ENST00000675955.1:ENST00000678728.1:ENST00000677430.1:ENST00000677455.1:ENST00000678616.1:ENST00000678362.1:ENST00000679112.1:ENST00000678645.1:ENST00000676567.1:ENST00000677845.1:ENST00000519163.6:ENST00000676858.1:ENST00000678747.1:ENST00000519668.1:ENST00000676697.1:ENST00000678216.1:ENST00000677855.1:ENST00000676695.1:ENST00000677836.1:ENST00000677070.1:ENST00000678444.1:ENST00000676534.1:ENST00000678138.1:ENST00000678807.1:ENST00000677052.1:ENST00000679274.1:ENST00000679042.1:ENST00000678345.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	36	2	4.67894	4.73121	4.78348	0.0087648	0.00290352	0.0788605	0.0494641
chr17	73205301	73205385	6672153	0	+	0.404762	(0.378,0.408]	chr17	650986	3	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	COG1	ENSG00000166685.13	ENST00000299886.9:ENST00000438720.7:ENST00000577844.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	37	2	4.51854	4.73052	4.9425	0.00748824	0.00452675	0.0772645	0.0595107
chr2	23924155	23924254	1080927	0	-	0.393939	(0.378,0.408]	chr2	115373	278	INTRON	INTRON	ATAD2B	ENSG00000119778.15	ENST00000238789.10:ENST00000439915.1	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	4.51854	4.73052	4.9425	0.00748824	0.00452675	0.0772645	0.0595107
chr7	102843725	102843825	3590055	0	-	0.4	(0.378,0.408]	chr7	335153	104	INTRON	INTRON	FBXL13	ENSG00000161040.18	ENST00000694871.1:ENST00000694870.1:ENST00000448002.6:ENST00000379305.7:ENST00000440067.3:ENST00000456695.6:ENST00000313221.8:ENST00000436908.5:ENST00000455112.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	37	2	4.51854	4.73052	4.9425	0.00748824	0.00452675	0.0772645	0.0595107
chr12	120869915	120870015	5435563	0	-	0.36	(0.35,0.378]	chr12	519663	344	INTRON	INTRON	SPPL3	ENSG00000157837.16	ENST00000353487.7:ENST00000536996.5:ENST00000543608.5:ENST00000543854.5	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	4.5655	4.730365	4.89523	0.0155464	0.00253947	0.100909	0.0465056
chr14	68005010	68005110	5767227	0	+	0.37	(0.35,0.378]	chr14	547066	43	INTRON	INTRON	RAD51B	ENSG00000182185.19	ENST00000487861.5:ENST00000471583.6:ENST00000479335.5:ENST00000487270.5:ENST00000488612.5:ENST00000553595.5:ENST00000497460.5:ENST00000492236.5:ENST00000554244.5:ENST00000478014.5:ENST00000469165.6:ENST00000460526.5:ENST00000468382.5:ENST00000557045.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	37	2	4.5655	4.730365	4.89523	0.0155464	0.00253947	0.100909	0.0465056
chr2	11195288	11195367	1067150	0	-	0.35443	(0.35,0.378]	chr2	113950	2	SS3_PROX	SS3_PROX:INTRON	ROCK2	ENSG00000134318.15	ENST00000315872.11:ENST00000401753.5	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	4.5655	4.730365	4.89523	0.0155464	0.00253947	0.100909	0.0465056
chr2	202291020	202291051	985175	0	+	0.354839	(0.35,0.378]	chr2	105749	1	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	NOP58	ENSG00000055044.11	ENST00000264279.10:ENST00000492688.5:ENST00000433543.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	37	2	4.5655	4.730365	4.89523	0.0155464	0.00253947	0.100909	0.0465056
chr5	31427900	31427997	2595932	0	-	0.371134	(0.35,0.378]	chr5	246550	31	INTRON	INTRON	DROSHA	ENSG00000113360.17	ENST00000344624.8:ENST00000511367.6:ENST00000513349.5:ENST00000504133.5:ENST00000510178.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	37	2	4.5655	4.730365	4.89523	0.0155464	0.00253947	0.100909	0.0465056
chr10	27522954	27523053	4413561	0	+	0.262626	[0,0.28]	chr10	407073	82	INTRON	INTRON	RAB18	ENSG00000099246.18	ENST00000682082.1:ENST00000611151.5:ENST00000621805.5:ENST00000535776.6:ENST00000684501.1:ENST00000683042.1:ENST00000683797.1:ENST00000682518.1:ENST00000356940.11:ENST00000682852.1:ENST00000683419.1:ENST00000683816.1:ENST00000682389.1:ENST00000684393.1:ENST00000682368.1:ENST00000683755.1:ENST00000682181.1:ENST00000682963.1:ENST00000375802.7:ENST00000465772.5:ENST00000682668.1:ENST00000683538.1:ENST00000423465.2:ENST00000682173.1:ENST00000682138.1:ENST00000683088.1:ENST00000683574.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	40	2	4.5461	4.730119999999999	4.91414	0.0365918	0.0064519	0.138959	0.0730725
chr6	107949489	107949589	3182760	0	-	0.23	[0,0.28]	chr6	296463	196	INTRON	INTRON	SEC63	ENSG00000025796.14	ENST00000369002.9:ENST00000429168.1:ENST00000484803.5:ENST00000446496.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	40	2	4.5461	4.730119999999999	4.91414	0.0365918	0.0064519	0.138959	0.0730725
chr9	112290258	112290358	4317525	0	-	0.23	[0,0.28]	chr9	397072	139	INTRON	INTRON	PTBP3	ENSG00000119314.16	ENST00000334318.10:ENST00000458258.5:ENST00000374257.6:ENST00000374255.6:ENST00000343327.6:ENST00000487997.1:ENST00000210227.4:ENST00000450374.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	40	2	4.5461	4.730119999999999	4.91414	0.0365918	0.0064519	0.138959	0.0730725
chr2	15393439	15393538	1071460	0	-	0.363636	(0.35,0.378]	chr2	114321	98	INTRON	INTRON	NBAS	ENSG00000151779.13	ENST00000281513.10:ENST00000442506.5:ENST00000441755.5	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	4.66929	4.730040000000001	4.79079	0.00846427	0.00541617	0.0776969	0.066545000000000007
chr11	71993733	71993830	4824186	0	+	0.278351	[0,0.28]	chr11	449954	27	INTRON	INTRON	RNF121	ENSG00000137522.18	ENST00000530655.5:ENST00000533380.5:ENST00000393713.7:ENST00000361756.8:ENST00000490867.5:ENST00000526549.5:ENST00000525243.5:ENST00000530137.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	40	2	4.63523	4.72978	4.82433	0.0200334	0.0139836	0.109608	0.10247
chr15	42520418	42520517	6009857	0	+	0.272727	[0,0.28]	chr15	572172	47	INTRON	INTRON	SNAP23	ENSG00000092531.10	ENST00000561526.5:ENST00000568451.5:ENST00000563765.5:ENST00000349777.5:ENST00000249647.8:ENST00000564153.5:ENST00000567094.5:ENST00000566327.5:ENST00000568331.5:ENST00000566035.5:ENST00000568859.5:ENST00000568514.5:ENST00000397138.5:ENST00000563873.5:ENST00000563830.2:ENST00000568841.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	40	2	4.63523	4.72978	4.82433	0.0200334	0.0139836	0.109608	0.10247
chr1	167785766	167785866	248413	0	+	0.44	(0.408,0.44]	chr1	29517	92	INTRON	INTRON	MPZL1	ENSG00000197965.12	ENST00000359523.7:ENST00000448405.5:ENST00000392121.7:ENST00000474859.5:ENST00000474729.5:ENST00000367853.3:ENST00000403379.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	80	2	3.45019	4.729615	6.00904	0.00152664	1.03233e-5	0.0353936	0.00235018
chr17	47099234	47099334	6788633	0	-	0.42	(0.408,0.44]	chr17	669501	165	INTRON	INTRON	ENSG00000262879	ENSG00000262879.6	ENST00000668245.1:ENST00000573341.6:ENST00000572864.5:ENST00000576938.1:ENST00000574741.1	lncRNA	lncRNA	lncRNA	lncRNA	0	36	2	4.7041	4.72904	4.75398	0.00703931	0.00381677	0.0718189	0.0562562
chr18	2748346	2748445	6865829	0	+	0.424242	(0.408,0.44]	chr18	680110	3	INTRON	INTRON	SMCHD1	ENSG00000101596.17	ENST00000320876.11:ENST00000688342.1:ENST00000693213.1:ENST00000577880.5:ENST00000584897.5:ENST00000583441.2:ENST00000690757.1:ENST00000686763.1:ENST00000686864.1:ENST00000688708.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	36	2	4.7041	4.72904	4.75398	0.00703931	0.00381677	0.0718189	0.0562562
chr2	47457837	47457937	774080	0	+	0.44	(0.408,0.44]	chr2	87279	118	INTRON	INTRON	MSH2	ENSG00000095002.15	ENST00000543555.6:ENST00000644092.1:ENST00000645339.1:ENST00000646415.1:ENST00000645506.1:ENST00000406134.5:ENST00000233146.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	36	2	4.7041	4.72904	4.75398	0.00703931	0.00381677	0.0718189	0.0562562
chr11	130911150	130911250	5054342	0	-	0.45	(0.44,0.476]	chr11	477045	3	SS5_PROX	SS5_PROX:INTRON	SNX19	ENSG00000120451.11	ENST00000265909.9:ENST00000533318.5:ENST00000528555.5:ENST00000530356.5:ENST00000533214.1:ENST00000531608.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	40	2	4.1054	4.728835	5.35227	0.0220205	8.47974e-4	0.123836	0.0267232
chr19	21173759	21173859	7040279	0	+	0.49	(0.476,0.515]	chr19	701950	35	INTRON	INTRON	ZNF431	ENSG00000196705.8	ENST00000600692.5:ENST00000599296.5:ENST00000594425.5:ENST00000311048.11:ENST00000598331.1	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.53023	4.72776	4.92529	0.0119748	0.00180221	0.0899583	0.0392772
chr3	38169836	38169936	1398587	0	+	0.5	(0.476,0.515]	chr3	146661	35	INTRON	INTRON	OXSR1	ENSG00000172939.9	ENST00000492714.1:ENST00000446845.5:ENST00000311806.8:ENST00000426620.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	36	2	4.53023	4.72776	4.92529	0.0119748	0.00180221	0.0899583	0.0392772
chr3	185591955	185592054	1585328	0	+	0.323232	(0.32,0.35]	chr3	164123	14	INTRON	INTRON	SENP2	ENSG00000163904.13	ENST00000430355.5:ENST00000465201.5:ENST00000453532.5:ENST00000296257.10:ENST00000413407.5:ENST00000439684.5:ENST00000458551.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	38	2	4.45629	4.727755	4.99922	0.0246089	0.00223907	0.12011	0.0435144
chr3	49374731	49374830	1693688	0	-	0.292929	(0.28,0.32]	chr3	173699	10	INTRON	INTRON	RHOA	ENSG00000067560.14	ENST00000678200.1:ENST00000422781.6:ENST00000676712.2:ENST00000678921.2:ENST00000445425.6:ENST00000454011.7:ENST00000418115.6:ENST00000679208.1:ENST00000677684.1:ENST00000431929.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	85	2	3.74806	4.727725	5.70739	8.32651e-4	4.11943e-4	0.0266389	0.0181365
chr8	43126830	43126929	3746505	0	+	0.323232	(0.32,0.35]	chr8	348632	41	UTR3	UTR3:EXON_MRNA:INTRON	POMK	ENSG00000185900.11	ENST00000676193.1:ENST00000674676.1	protein_coding	protein_coding	protein_coding	protein_coding	0	40	2	4.27113	4.72764	5.18415	0.0199982	0.00333629	0.120668	0.0512081
chr2	151450810	151450908	893634	0	+	0.530612	(0.515,0.57]	chr2	98976	39	INTRON	INTRON	RIF1	ENSG00000080345.18	ENST00000453091.6:ENST00000428287.6:ENST00000444746.7:ENST00000243326.9:ENST00000414861.6:ENST00000430328.6	protein_coding	protein_coding	protein_coding	protein_coding	1	68	2	3.88616	4.727615	5.56907	1.36543e-4	1.07993e-4	0.0106702	0.00878438
chr22	20947813	20947913	7480822	0	+	0.53	(0.515,0.57]	chr22	763096	132	INTRON	INTRON	CRKL	ENSG00000099942.13	ENST00000354336.8:ENST00000411769.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	68	2	3.71942	4.72752	5.73562	2.61221e-4	6.01042e-5	0.014326	0.00680853
chr11	67164692	67164792	4812902	0	+	0.51	(0.476,0.515]	chr11	448116	156	INTRON	INTRON	KDM2A	ENSG00000173120.15	ENST00000529006.7:ENST00000398645.6:ENST00000527157.1:ENST00000308783.9	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	36	2	4.61519	4.727405	4.83962	0.00528365	0.00480934	0.0656295	0.0602209
chr11	87291694	87291794	4845355	0	+	0.51	(0.476,0.515]	chr11	451872	144	INTRON	INTRON	TMEM135	ENSG00000166575.17	ENST00000340353.11:ENST00000305494.6:ENST00000532959.5	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.61519	4.727405	4.83962	0.00528365	0.00480934	0.0656295	0.0602209
chr12	71624888	71624985	5363172	0	-	0.505155	(0.476,0.515]	chr12	511928	2	INTRON	INTRON	ZFC3H1	ENSG00000133858.17	ENST00000378743.9:ENST00000552994.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	36	2	4.61519	4.727405	4.83962	0.00528365	0.00480934	0.0656295	0.0602209
chr19	57843958	57844057	7105970	0	+	0.50505	(0.476,0.515]	chr19	713218	15	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	ENSG00000268750:ZNF587B	ENSG00000268750.7:ENSG00000269343.9	ENST00000597134.5:ENST00000596498.2:ENST00000593873.6:ENST00000603271.1:ENST00000598031.1:ENST00000442832.8:ENST00000594901.2:ENST00000604231.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	36	2	4.61519	4.727405	4.83962	0.00528365	0.00480934	0.0656295	0.0602209
chr5	134961269	134961368	2492276	0	+	0.484848	(0.476,0.515]	chr5	238098	7	UTR3	UTR3:EXON_MRNA:INTRON	PCBD2	ENSG00000132570.15	ENST00000512783.5:ENST00000254908.11:ENST00000504352.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	36	2	4.61519	4.727405	4.83962	0.00528365	0.00480934	0.0656295	0.0602209
chr9	122904509	122904609	4338627	0	-	0.5	(0.476,0.515]	chr9	398791	65	INTRON	INTRON	RC3H2	ENSG00000056586.16	ENST00000357244.7:ENST00000498479.5:ENST00000423239.6:ENST00000335387.9:ENST00000478216.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	36	2	4.61519	4.727405	4.83962	0.00528365	0.00480934	0.0656295	0.0602209
chr11	1008432	1008531	4721943	0	+	0.676768	(0.57,1]	chr11	436746	4	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	AP2A2	ENSG00000183020.15	ENST00000332231.9:ENST00000448903.7:ENST00000529858.6:ENST00000693238.1:ENST00000687890.1:ENST00000687792.1:ENST00000528815.5:ENST00000525891.5:ENST00000688963.1:ENST00000529438.5:ENST00000526401.6:ENST00000685443.1:ENST00000687570.1:ENST00000689772.1:ENST00000689771.1:ENST00000686734.1:ENST00000531497.2:ENST00000688472.1:ENST00000691652.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	28	2	4.49107	4.727214999999999	4.96336	0.00220544	2.05554e-4	0.0417893	0.0124557
chr2	235770375	235770475	1044111	0	+	0.6	(0.57,1]	chr2	111266	195	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1:ENST00000409538.5:ENST00000614409.4:ENST00000619456.4:ENST00000428334.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	28	2	4.49107	4.727214999999999	4.96336	0.00220544	2.05554e-4	0.0417893	0.0124557
chr17	78387280	78387380	6682379	0	+	0.55	(0.515,0.57]	chr17	652785	41	INTRON	INTRON	PGS1	ENSG00000087157.19	ENST00000262764.11:ENST00000589425.5:ENST00000586510.6:ENST00000586325.5:ENST00000589689.5:ENST00000589426.5:ENST00000588169.5:ENST00000592043.5:ENST00000587356.1:ENST00000585521.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	36	2	4.28921	4.72667	5.16413	0.00990051	8.14815e-4	0.0877296	0.0263656
chr16	50247500	50247600	6348400	0	+	0.41	(0.408,0.44]	chr16	609379	9	INTRON	INTRON	ADCY7	ENSG00000121281.13	ENST00000564965.5:ENST00000564044.5	protein_coding	protein_coding	protein_coding	protein_coding	2	99	2	3.2538299999999998	4.726545	6.19926	2.37059e-4	1.98542e-5	0.0136195	0.00360253
chr1	50781310	50781409	450463	0	-	0.313131	(0.28,0.32]	chr1	54249	362	INTRON	INTRON	FAF1	ENSG00000185104.21	ENST00000396153.7:ENST00000487898.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	39	2	4.4263	4.7264800000000005	5.02666	0.0330296	0.0027935	0.133816	0.0488769
chr5	154434960	154435058	2755962	0	-	0.295918	(0.28,0.32]	chr5	259910	13	EXON_LNCRNA	EXON_LNCRNA:INTRON	SAP30L-AS1	ENSG00000245275.8	ENST00000658072.1:ENST00000519727.5:ENST00000652933.1:ENST00000524264.6:ENST00000652895.1:ENST00000501280.4	lncRNA	lncRNA	lncRNA	lncRNA	0	39	2	4.4263	4.7264800000000005	5.02666	0.0330296	0.0027935	0.133816	0.0488769
chr5	157795656	157795754	2758010	0	-	0.306122	(0.28,0.32]	chr5	260260	8	EXON_MRNA	EXON_MRNA:INTRON	CLINT1	ENSG00000113282.14	ENST00000523094.5:ENST00000411809.7:ENST00000530742.5:ENST00000518855.5:ENST00000523908.5:ENST00000530302.1:ENST00000521615.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	39	2	4.4263	4.7264800000000005	5.02666	0.0330296	0.0027935	0.133816	0.0488769
chr1	45529921	45530021	439830	0	-	0.53	(0.515,0.57]	chr1	53279	70	INTRON	INTRON	PRDX1	ENSG00000117450.15	ENST00000676549.1	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.6831	4.72647	4.76984	0.00471288	0.00198034	0.0600108	0.0411469
chr2	10360579	10360679	692208	0	+	0.52	(0.515,0.57]	chr2	81139	58	INTRON	INTRON	HPCAL1	ENSG00000115756.13	ENST00000423674.5:ENST00000307845.8:ENST00000381765.7:ENST00000419810.6:ENST00000622018.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	34	2	4.6831	4.72647	4.76984	0.00471288	0.00198034	0.0600108	0.0411469
chr2	47821526	47821621	1115257	0	-	0.536842	(0.515,0.57]	chr2	119631	7	INTRON	INTRON	FBXO11	ENSG00000138081.22	ENST00000684712.1:ENST00000682451.1:ENST00000403359.8:ENST00000402508.5:ENST00000683894.1:ENST00000681999.1:ENST00000682975.1:ENST00000684085.1:ENST00000493962.6:ENST00000492225.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	34	2	4.6831	4.72647	4.76984	0.00471288	0.00198034	0.0600108	0.0411469
chr13	46045916	46046016	5586142	0	-	0.28	[0,0.28]	chr13	533866	4	SS3_PROX	SS3_PROX:INTRON	ZC3H13	ENSG00000123200.17	ENST00000242848.8:ENST00000679008.1:ENST00000282007.7:ENST00000428921.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	42	2	4.20106	4.72642	5.25178	0.0695895	0.0022031	0.184298	0.0435144
chr14	101895655	101895755	5819863	0	+	0.37	(0.35,0.378]	chr14	551917	7	INTRON	INTRON	PPP2R5C	ENSG00000078304.20	ENST00000694906.1:ENST00000422945.6:ENST00000328724.9:ENST00000350249.7:ENST00000334743.9:ENST00000445439.7:ENST00000557095.5:ENST00000556218.5:ENST00000557534.1:ENST00000557716.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	87	2	3.12905	4.72626	6.32347	0.00566312	2.81578e-6	0.0653997	0.00107271
chr3	183724731	183724831	1580563	0	+	0.46	(0.44,0.476]	chr3	163049	2	SS5_PROX	SS5_PROX:INTRON	YEATS2	ENSG00000163872.16	ENST00000305135.10	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.5227	4.726190000000001	4.92968	0.0128818	0.00171443	0.0926667	0.0381936
chr19	16373435	16373534	7148664	0	-	0.282828	(0.28,0.32]	chr19	722210	111	INTRON	INTRON	EPS15L1	ENSG00000127527.14	ENST00000602022.5:ENST00000455140.7:ENST00000592031.5:ENST00000248070.10:ENST00000535753.6:ENST00000594975.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	39	2	4.52233	4.72581	4.92929	0.0129279	0.0098607	0.0990564	0.0838128
chr2	86087023	86087120	1170426	0	-	0.28866000000000003	(0.28,0.32]	chr2	124882	9	EXON_MRNA	EXON_MRNA:INTRON	POLR1A	ENSG00000068654.17	ENST00000263857.11:ENST00000409681.1:ENST00000683266.1:ENST00000684556.1:ENST00000486964.5:ENST00000684177.1:ENST00000424089.5:ENST00000409024.3:ENST00000684026.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	39	2	4.52233	4.72581	4.92929	0.0129279	0.0098607	0.0990564	0.0838128
chr10	68381599	68381699	4638892	0	-	0.47	(0.44,0.476]	chr10	426565	2	SS3_PROX	SS3_PROX:INTRON	RUFY2	ENSG00000204130.14	ENST00000466493.5:ENST00000602465.6:ENST00000388768.6:ENST00000399200.7:ENST00000454950.6:ENST00000472394.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	36	2	4.61954	4.72578	4.83202	0.00525002	0.00506805	0.0646039	0.0633615
chr10	124677210	124677310	4711427	0	-	0.47	(0.44,0.476]	chr10	434762	94	INTRON	INTRON	FAM53B	ENSG00000189319.14	ENST00000337318.8:ENST00000392754.7:ENST00000280780.6	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.61954	4.72578	4.83202	0.00525002	0.00506805	0.0646039	0.0633615
chr14	74711155	74711255	5923000	0	-	0.46	(0.44,0.476]	chr14	562834	90	INTRON	INTRON	AREL1	ENSG00000119682.18	ENST00000557401.5:ENST00000356357.9:ENST00000681099.1:ENST00000681535.1:ENST00000681599.1:ENST00000680030.1:ENST00000556202.5:ENST00000469797.5:ENST00000556589.5:ENST00000555249.1:ENST00000554525.1:ENST00000556860.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	36	2	4.61954	4.72578	4.83202	0.00525002	0.00506805	0.0646039	0.0633615
chr16	23472632	23472730	6464187	0	-	0.44898	(0.44,0.476]	chr16	623825	21	INTRON	INTRON	GGA2	ENSG00000103365.15	ENST00000309859.8:ENST00000567468.5	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.61954	4.72578	4.83202	0.00525002	0.00506805	0.0646039	0.0633615
chr17	4837236	4837336	6549551	0	+	0.45	(0.44,0.476]	chr17	635578	32	INTRON	INTRON	MINK1	ENSG00000141503.17	ENST00000355280.11:ENST00000572330.5:ENST00000347992.11:ENST00000574453.5:ENST00000453408.7:ENST00000664602.1:ENST00000577021.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	36	2	4.61954	4.72578	4.83202	0.00525002	0.00506805	0.0646039	0.0633615
chr1	52479945	52480042	457821	0	-	0.42268	(0.408,0.44]	chr1	55030	17	INTRON	INTRON	TUT4	ENSG00000134744.14	ENST00000371544.7:ENST00000257177.9:ENST00000528642.5:ENST00000484723.6:ENST00000371541.5:ENST00000473856.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	40	2	4.10594	4.72571	5.34548	0.0219367	9.40657e-4	0.123836	0.0280776
chr2	186500582	186500677	942961	0	+	0.336842	(0.32,0.35]	chr2	103256	3	SS5_PROX	SS5_PROX:INTRON	ZC3H15	ENSG00000065548.18	ENST00000421536.5:ENST00000337859.11:ENST00000437396.1:ENST00000481101.5:ENST00000468120.5:ENST00000496289.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	39	2	4.273	4.72561	5.17822	0.0368357	0.00115625	0.138959	0.0313436
chr6	31746793	31746886	2843555	0	+	0.44086	(0.44,0.476]	chr6	267796	6	INTRON	INTRON	MSH5:MSH5-SAPCD1	ENSG00000204410.16:ENSG00000255152.8	ENST00000375755.8:ENST00000375750.9:ENST00000650702.1:ENST00000493662.6:ENST00000375703.7:ENST00000375740.7:ENST00000423982.6:ENST00000463144.5:ENST00000450148.5:ENST00000497269.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	162	2	4.45782	4.72437	4.99092	1.04976e-5	1.26982e-7	0.00253642	1.6131e-4
chr3	49389754	49389854	1693840	0	-	0.54	(0.515,0.57]	chr3	173707	138	INTRON	INTRON	RHOA	ENSG00000067560.14	ENST00000678200.1:ENST00000422781.6:ENST00000676712.2:ENST00000678921.2:ENST00000445425.6:ENST00000454011.7:ENST00000418115.6:ENST00000679208.1:ENST00000677684.1:ENST00000431929.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	34	2	4.59914	4.72425	4.84936	0.00616166	0.00146032	0.0676501	0.0349875
chr9	131427892	131427992	4217308	0	+	0.4	(0.378,0.408]	chr9	386720	333	INTRON	INTRON	PRRC2B	ENSG00000288701.1	ENST00000682525.1:ENST00000684596.1:ENST00000683519.1:ENST00000682501.1	protein_coding	protein_coding	protein_coding	protein_coding	1	76	2	3.56208	4.7241599999999995	5.88624	6.94246e-4	1.19481e-4	0.0240761	0.00988798
chr10	6091168	6091267	4385711	0	+	0.525253	(0.515,0.57]	chr10	404761	8	INTRON	INTRON	RBM17	ENSG00000134453.16	ENST00000379888.9:ENST00000437845.6:ENST00000432931.5:ENST00000446108.5	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.68568	4.72406	4.76244	0.00362147	0.00270027	0.0533855	0.0479115
chr14	103727200	103727289	5828645	0	+	0.539326	(0.515,0.57]	chr14	553166	5	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ZFYVE21	ENSG00000100711.14	ENST00000216602.10:ENST00000554255.5:ENST00000311141.7:ENST00000553512.5:ENST00000554630.5:ENST00000556610.5:ENST00000555501.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	34	2	4.68568	4.72406	4.76244	0.00362147	0.00270027	0.0533855	0.0479115
chr2	24516188	24516288	709506	0	+	0.54	(0.515,0.57]	chr2	82200	236	INTRON	INTRON	NCOA1	ENSG00000084676.16	ENST00000348332.8:ENST00000496333.5:ENST00000406961.5:ENST00000469850.5:ENST00000405141.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	34	2	4.68568	4.72406	4.76244	0.00362147	0.00270027	0.0533855	0.0479115
chr6	15511569	15511638	2825617	0	+	0.550725	(0.515,0.57]	chr6	265265	2	SS5_PROX	SS5_PROX:INTRON	JARID2	ENSG00000008083.14	ENST00000341776.7:ENST00000397311.4	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.68568	4.72406	4.76244	0.00362147	0.00270027	0.0533855	0.0479115
chr6	20807328	20807428	2831118	0	+	0.53	(0.515,0.57]	chr6	265673	257	INTRON	INTRON	CDKAL1	ENSG00000145996.11	ENST00000274695.8:ENST00000378610.1	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.68568	4.72406	4.76244	0.00362147	0.00270027	0.0533855	0.0479115
chr19	2776801	2776899	7116695	0	-	0.561224	(0.515,0.57]	chr19	715508	62	INTRON	INTRON	SGTA	ENSG00000104969.11	ENST00000221566.7:ENST00000678109.1:ENST00000676984.1:ENST00000677513.1:ENST00000676943.1:ENST00000677731.1:ENST00000679138.1:ENST00000677562.1:ENST00000678595.1:ENST00000677754.1:ENST00000677149.1:ENST00000678577.1:ENST00000589251.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	37	2	4.17037	4.72344	5.27651	0.0139194	5.11033e-4	0.10247	0.020816
chr2	97163686	97163782	831362	0	+	0.520833	(0.515,0.57]	chr2	93024	12	INTRON	INTRON	ANKRD36	ENSG00000135976.21	ENST00000420699.9:ENST00000652721.1:ENST00000461153.7	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	4.17037	4.72344	5.27651	0.0139194	5.11033e-4	0.10247	0.020816
chr16	75376144	75376244	6528717	0	-	0.43	(0.408,0.44]	chr16	632309	32	INTRON	INTRON	CFDP1	ENSG00000153774.9	ENST00000283882.4:ENST00000612761.1:ENST00000569341.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	74	2	3.75755	4.723405	5.68926	2.62433e-4	2.2853e-4	0.0143317	0.0138641
chr1	246292919	246293018	678564	0	-	0.353535	(0.35,0.378]	chr1	79733	993	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000453676.5:ENST00000462422.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	38	2	4.40128	4.7232	5.04512	0.0120289	0.00393262	0.0962115	0.0548259
chr17	6902604	6902704	6717229	0	-	0.41	(0.408,0.44]	chr17	658643	209	INTRON	INTRON	ALOX12-AS1	ENSG00000215067.11	ENST00000653385.1:ENST00000659418.1:ENST00000572385.5:ENST00000570562.5:ENST00000575889.5	lncRNA	lncRNA	lncRNA	lncRNA	0	36	2	4.51604	4.723140000000001	4.93024	0.0137419	0.00170369	0.0949306	0.0381936
chr3	33818088	33818187	1394581	0	+	0.414141	(0.408,0.44]	chr3	146042	41	INTRON	INTRON	PDCD6IP	ENSG00000170248.15	ENST00000457054.6:ENST00000648706.1:ENST00000435909.5:ENST00000430877.5:ENST00000413073.1:ENST00000307296.8:ENST00000477798.5:ENST00000498147.5:ENST00000484478.5:ENST00000494810.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	36	2	4.51604	4.723140000000001	4.93024	0.0137419	0.00170369	0.0949306	0.0381936
chr3	48975479	48975576	1422046	0	+	0.412371	(0.408,0.44]	chr3	149556	1	INTRON	INTRON	ARIH2	ENSG00000177479.20	ENST00000449376.5:ENST00000490095.5:ENST00000356401.9:ENST00000452385.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	36	2	4.51604	4.723140000000001	4.93024	0.0137419	0.00170369	0.0949306	0.0381936
chr8	91082319	91082418	3797119	0	+	0.434343	(0.408,0.44]	chr8	351901	12	INTRON	INTRON	OTUD6B	ENSG00000155100.11	ENST00000285420.8:ENST00000617869.4:ENST00000615618.1:ENST00000522894.5:ENST00000404789.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	36	2	4.51604	4.723140000000001	4.93024	0.0137419	0.00170369	0.0949306	0.0381936
chr5	151791651	151791749	2522005	0	+	0.530612	(0.515,0.57]	chr5	241325	7	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	G3BP1	ENSG00000145907.16	ENST00000678070.1:ENST00000678964.1:ENST00000678925.1:ENST00000394123.7:ENST00000676978.1:ENST00000679289.1:ENST00000677493.1:ENST00000676644.1:ENST00000677757.1:ENST00000522761.6:ENST00000676827.1:ENST00000520177.6:ENST00000676634.1:ENST00000678854.1:ENST00000677602.1:ENST00000519832.1:ENST00000676911.1:ENST00000356245.8:ENST00000678646.1:ENST00000677381.1:ENST00000678904.1:ENST00000678910.1:ENST00000678101.1:ENST00000677105.1:ENST00000676813.1:ENST00000522367.6:ENST00000517947.5:ENST00000507878.7:ENST00000678369.1:ENST00000677433.1:ENST00000678564.1:ENST00000677923.1:ENST00000677323.1:ENST00000522666.1:ENST00000679057.1:ENST00000678750.1:ENST00000677687.1:ENST00000678372.1:ENST00000677211.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	71	2	3.62164	4.72288	5.82412	5.41944e-4	1.29371e-5	0.0215026	0.00266147
chr14	58246363	58246461	5730917	0	+	0.418367	(0.408,0.44]	chr14	544076	10	INTRON	INTRON	PSMA3	ENSG00000100567.13	ENST00000216455.9:ENST00000554812.5:ENST00000553665.5:ENST00000557087.5:ENST00000555931.5:ENST00000412908.6:ENST00000555743.1:ENST00000557508.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	74	2	3.71874	4.722865	5.72699	3.17998e-4	1.93446e-4	0.0159645	0.0127226
chr19	11379078	11379178	7137403	0	-	0.43	(0.408,0.44]	chr19	719912	3	SS3_PROX	SS3_PROX:INTRON	EPOR	ENSG00000187266.14	ENST00000222139.11:ENST00000592375.6:ENST00000588681.5:ENST00000588859.5:ENST00000591958.5:ENST00000586890.5:ENST00000590927.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	36	2	4.62009	4.722695	4.8253	0.0056738	0.00504155	0.0653997	0.0646039
chr2	108850417	108850517	848760	0	+	0.42	(0.408,0.44]	chr2	95004	31	INTRON	INTRON	CCDC138	ENSG00000163006.12	ENST00000412964.6:ENST00000409529.6:ENST00000295124.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	36	2	4.62009	4.722695	4.8253	0.0056738	0.00504155	0.0653997	0.0646039
chr10	97482130	97482228	4676334	0	-	0.367347	(0.35,0.378]	chr10	431183	7	INTRON	INTRON	MMS19	ENSG00000155229.21	ENST00000370782.6:ENST00000438925.7:ENST00000415383.5:ENST00000355839.10:ENST00000327238.14:ENST00000437002.5:ENST00000441194.5:ENST00000483626.5:ENST00000422685.5:ENST00000448660.5:ENST00000439048.1:ENST00000477575.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	37	2	4.48184	4.72257	4.9633	0.0191702	0.00198929	0.108861	0.0411469
chr20	49116925	49117025	7351651	0	-	0.37	(0.35,0.378]	chr20	749615	4	SS5_PROX	SS5_PROX:INTRON	STAU1	ENSG00000124214.21	ENST00000371856.7:ENST00000371828.7:ENST00000340954.11:ENST00000347458.9:ENST00000360426.8:ENST00000371792.5:ENST00000371802.5	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	4.48184	4.72257	4.9633	0.0191702	0.00198929	0.108861	0.0411469
chr5	96728418	96728518	2434261	0	+	0.36	(0.35,0.378]	chr5	233804	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	CAST	ENSG00000153113.24	ENST00000505143.5:ENST00000675107.1:ENST00000338252.7:ENST00000508830.5:ENST00000511097.6:ENST00000395812.6:ENST00000674702.1:ENST00000675179.1:ENST00000674984.1:ENST00000421689.6:ENST00000512620.5:ENST00000514845.5:ENST00000675663.1:ENST00000508608.6:ENST00000514055.5:ENST00000506811.5:ENST00000675267.1:ENST00000341926.7:ENST00000675266.1:ENST00000675614.1:ENST00000395813.5:ENST00000511049.5:ENST00000675858.1:ENST00000309190.9:ENST00000510156.5:ENST00000508117.6:ENST00000674587.1:ENST00000504465.5:ENST00000511782.5:ENST00000509903.5:ENST00000675033.1:ENST00000513666.5:ENST00000508197.1:ENST00000675479.1:ENST00000510756.6:ENST00000348386.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	37	2	4.48184	4.72257	4.9633	0.0191702	0.00198929	0.108861	0.0411469
chr6	158250088	158250188	3018719	0	+	0.37	(0.35,0.378]	chr6	281677	174	INTRON	INTRON	TULP4	ENSG00000130338.13	ENST00000620026.1	protein_coding	processed_transcript	protein_coding	processed_transcript	0	37	2	4.48184	4.72257	4.9633	0.0191702	0.00198929	0.108861	0.0411469
chr12	1783379	1783479	5065101	0	+	0.47	(0.44,0.476]	chr12	477904	1	SS3_PROX	SS3_PROX:INTRON	ADIPOR2	ENSG00000006831.10	ENST00000357103.5	protein_coding	protein_coding	protein_coding	protein_coding	1	80	2	3.31011	4.7225	6.13489	0.00259023	4.97756e-6	0.0452934	0.00151644
chr3	142379282	142379382	1836918	0	-	0.34	(0.32,0.35]	chr3	184595	23	INTRON	INTRON	XRN1	ENSG00000114127.11	ENST00000264951.8:ENST00000392981.7:ENST00000498077.6:ENST00000472697.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	88	2	3.31533	4.72238	6.12943	0.00323121	1.4081e-5	0.0507087	0.00279379
chr11	68572940	68573035	4818477	0	+	0.368421	(0.35,0.378]	chr11	449001	15	INTRON	INTRON	PPP6R3	ENSG00000110075.15	ENST00000534534.5:ENST00000524845.5:ENST00000393800.7:ENST00000265637.8:ENST00000524904.5:ENST00000393801.7:ENST00000265636.9:ENST00000529710.5:ENST00000527403.6:ENST00000534190.5:ENST00000525421.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	37	2	4.58537	4.722035	4.8587	0.00703328	0.00695662	0.0754576	0.0718189
chr13	46144041	46144141	5586401	0	-	0.36	(0.35,0.378]	chr13	533908	2	SS5_PROX	SS5_PROX:INTRON	LCP1	ENSG00000136167.15	ENST00000398576.6:ENST00000323076.7	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	4.58537	4.722035	4.8587	0.00703328	0.00695662	0.0754576	0.0718189
chr4	32139361	32139461	1942843	0	+	0.28	[0,0.28]	chr4	194733	341	INTRON	INTRON	LINC02506	ENSG00000251129.3	ENST00000662669.1:ENST00000665582.2:ENST00000667252.2:ENST00000660373.2:ENST00000684849.1:ENST00000513211.2:ENST00000659613.1:ENST00000657576.1:ENST00000686730.1:ENST00000685407.1:ENST00000685455.1:ENST00000655951.1	lncRNA	lncRNA	lncRNA	lncRNA	0	40	2	4.46726	4.721724999999999	4.97619	0.0427997	0.00535756	0.148082	0.0663076
chr4	55892214	55892314	1961585	0	+	0.24	[0,0.28]	chr4	196670	2	SS3_PROX	SS3_PROX:INTRON	EXOC1	ENSG00000090989.18	ENST00000381295.7:ENST00000346134.11:ENST00000349598.6:ENST00000511971.5:ENST00000509302.5:ENST00000504321.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	40	2	4.46726	4.721724999999999	4.97619	0.0427997	0.00535756	0.148082	0.0663076
chr5	151488941	151489039	2521745	0	+	0.27551	[0,0.28]	chr5	241267	8	UTR3	UTR3:EXON_MRNA	SLC36A1	ENSG00000123643.13	ENST00000243389.8	protein_coding	protein_coding	protein_coding	protein_coding	0	40	2	4.46726	4.721724999999999	4.97619	0.0427997	0.00535756	0.148082	0.0663076
chr9	95892377	95892476	4166904	0	+	0.383838	(0.378,0.408]	chr9	379726	92	INTRON	INTRON	ERCC6L2	ENSG00000182150.19	ENST00000402838.3:ENST00000288985.13:ENST00000683937.1:ENST00000682748.1:ENST00000683991.1:ENST00000682983.1:ENST00000456993.7:ENST00000682394.1:ENST00000683350.1:ENST00000670016.1:ENST00000653738.2:ENST00000659728.1:ENST00000683156.1:ENST00000683176.1:ENST00000683227.1:ENST00000683128.1:ENST00000653324.2:ENST00000661047.1:ENST00000426805.2:ENST00000466840.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	38	2	4.32174	4.72151	5.12128	0.0132362	0.00251746	0.0999551	0.0446195
chr14	90602500	90602600	5949581	0	-	0.52	(0.515,0.57]	chr14	564918	3	SS3_PROX	SS3_PROX:INTRON	TTC7B	ENSG00000165914.15	ENST00000328459.11:ENST00000555005.5:ENST00000554654.5:ENST00000553972.5:ENST00000555894.5:ENST00000557292.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	35	2	4.31326	4.7215	5.12974	0.0141817	4.54392e-4	0.0959618	0.0192381
chr5	177540141	177540240	2778298	0	-	0.545455	(0.515,0.57]	chr5	261979	6	INTRON	INTRON	FAM193B	ENSG00000146067.16	ENST00000514747.6:ENST00000506955.5:ENST00000508298.5:ENST00000510429.1:ENST00000506432.1:ENST00000507587.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	35	2	4.31326	4.7215	5.12974	0.0141817	4.54392e-4	0.0959618	0.0192381
chr11	17076342	17076442	4927720	0	-	0.53	(0.515,0.57]	chr11	461298	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	RPS13	ENSG00000110700.7	ENST00000525634.6:ENST00000526895.5:ENST00000228140.6:ENST00000525828.1:ENST00000533969.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	191	2	4.0751	4.721245	5.36739	1.01707e-6	9.40345e-9	5.76724e-4	2.61578e-5
chr1	112572442	112572541	523104	0	-	0.252525	[0,0.28]	chr1	61534	7	INTRON	INTRON	ST7L	ENSG00000007341.19	ENST00000358039.9:ENST00000490715.5:ENST00000360743.8:ENST00000361846.7:ENST00000480988.5:ENST00000369669.5:ENST00000490067.5:ENST00000343210.11:ENST00000369666.5:ENST00000497457.5:ENST00000463235.5:ENST00000418497.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	40	2	4.55618	4.721215000000001	4.88625	0.0173315	0.0171034	0.110899	0.104099
chr4	56433353	56433453	2151637	0	-	0.23	[0,0.28]	chr4	211799	252	INTRON	INTRON	PPAT	ENSG00000128059.8	ENST00000264220.6:ENST00000510643.5:ENST00000507724.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	40	2	4.55618	4.721215000000001	4.88625	0.0173315	0.0171034	0.110899	0.104099
chrX	102836630	102836729	7696583	0	+	0.232323	[0,0.28]	chrX	787630	14	INTRON	INTRON	LINC00630	ENSG00000223546.8	ENST00000431616.5:ENST00000440496.5:ENST00000420471.5:ENST00000658813.1:ENST00000656628.1	lncRNA	lncRNA	lncRNA	lncRNA	0	40	2	4.55618	4.721215000000001	4.88625	0.0173315	0.0171034	0.110899	0.104099
chr2	135918859	135918958	1234034	0	-	0.282828	(0.28,0.32]	chr2	131383	21	INTRON	INTRON	DARS1	ENSG00000115866.11	ENST00000264161.9:ENST00000422708.3	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	4.23719	4.7208950000000005	5.2046	0.0264147	0.00448664	0.133676	0.0593175
chr7	111347879	111347979	3621961	0	-	0.3	(0.28,0.32]	chr7	337093	3840	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	41	2	4.23719	4.7208950000000005	5.2046	0.0264147	0.00448664	0.133676	0.0593175
chr19	29992010	29992110	7048061	0	+	0.29	(0.28,0.32]	chr19	702695	52	INTRON	INTRON	URI1	ENSG00000105176.18	ENST00000360605.8:ENST00000574233.5:ENST00000392271.6:ENST00000574110.5:ENST00000574666.5:ENST00000576442.1:ENST00000570704.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	40	2	4.2432	4.72081	5.19842	0.0479043	0.00152333	0.153019	0.0360297
chr22	21590161	21590261	7481929	0	+	0.37	(0.35,0.378]	chr22	763232	214	INTRON	INTRON	UBE2L3	ENSG00000185651.16	ENST00000458578.6:ENST00000545681.2:ENST00000696046.1:ENST00000342192.9:ENST00000496722.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	124	2	3.07741	4.720775	6.36414	1.44425e-4	1.66911e-5	0.010445	0.00328054
chr2	9527285	9527356	1064194	0	-	0.323944	(0.32,0.35]	chr2	113517	1	SS5_PROX	SS5_PROX:INTRON	ADAM17	ENSG00000151694.14	ENST00000310823.8:ENST00000648548.1:ENST00000649227.1:ENST00000648857.1:ENST00000647979.1:ENST00000647610.1:ENST00000650116.1:ENST00000649686.1:ENST00000647622.1:ENST00000649972.1:ENST00000650241.1:ENST00000618923.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	131	2	3.25101	4.720644999999999	6.19028	6.56527e-5	6.22233e-5	0.00715734	0.00655977
chr16	406588	406684	6272132	0	+	0.552083	(0.515,0.57]	chr16	598517	3	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NME4:DECR2	ENSG00000103202.13:ENSG00000242612.7	ENST00000444498.5:ENST00000627716.2:ENST00000424398.6:ENST00000633923.1:ENST00000219481.10:ENST00000631605.1:ENST00000439661.5:ENST00000437024.5:ENST00000633348.1:ENST00000445291.5:ENST00000633025.1:ENST00000461802.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	35	2	4.399	4.720625	5.04225	0.00708863	0.00131841	0.0754923	0.0331539
chr3	14971888	14971988	1372024	0	+	0.57	(0.515,0.57]	chr3	144608	90	INTRON	INTRON	NR2C2	ENSG00000177463.16	ENST00000425241.6:ENST00000413118.5:ENST00000435454.5:ENST00000323373.10:ENST00000475707.5:ENST00000393102.7:ENST00000437120.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	35	2	4.399	4.720625	5.04225	0.00708863	0.00131841	0.0754923	0.0331539
chr1	77788445	77788545	147638	0	+	0.28	[0,0.28]	chr1	16483	47	INTRON	INTRON	MIGA1	ENSG00000180488.16	ENST00000443751.3:ENST00000643390.1:ENST00000643143.1:ENST00000645756.1:ENST00000642959.1:ENST00000370791.8:ENST00000646892.1:ENST00000645526.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	41	2	4.38376	4.72062	5.05748	0.0258536	0.0113653	0.133676	0.0886611
chr11	47317712	47317811	4788760	0	+	0.272727	[0,0.28]	chr11	443128	20	INTRON	INTRON	MADD	ENSG00000110514.19	ENST00000342922.8:ENST00000402799.5:ENST00000406482.5:ENST00000349238.7:ENST00000311027.9:ENST00000407859.7:ENST00000395344.7:ENST00000395336.7:ENST00000402192.6:ENST00000405573.2:ENST00000634938.1	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	4.38376	4.72062	5.05748	0.0258536	0.0113653	0.133676	0.0886611
chr12	27727962	27728062	5099166	0	+	0.26	[0,0.28]	chr12	481823	19	INTRON	INTRON	MRPS35	ENSG00000061794.13	ENST00000536569.1:ENST00000081029.8:ENST00000538315.5:ENST00000542791.1:ENST00000542199.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	41	2	4.38376	4.72062	5.05748	0.0258536	0.0113653	0.133676	0.0886611
chr16	8046923	8047023	6440978	0	-	0.32	(0.28,0.32]	chr16	620351	393	INTRON	INTRON	ENSG00000260289	ENSG00000260289.2	ENST00000670665.1:ENST00000654046.1:ENST00000567103.2	lncRNA	lncRNA	lncRNA	lncRNA	0	40	2	4.33863	4.71966	5.10069	0.0207276	0.00610574	0.122348	0.0676501
chr10	50335299	50335399	4617791	0	-	0.51	(0.476,0.515]	chr10	425400	76	INTRON	INTRON	SGMS1	ENSG00000198964.14	ENST00000429490.5:ENST00000361781.7:ENST00000602619.1:ENST00000361543.3:ENST00000626236.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	74	2	3.62464	4.7194199999999995	5.8142	5.079e-4	1.0551e-4	0.0202328	0.00920724
chr17	66331898	66331998	6662590	0	+	0.3	(0.28,0.32]	chr17	650320	254	INTRON	INTRON	PRKCA	ENSG00000154229.12	ENST00000413366.8:ENST00000578063.5:ENST00000583361.1:ENST00000284384.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	85	2	3.47062	4.71822	5.96582	0.00137212	3.08567e-4	0.0340241	0.0161584
chr5	37370977	37371041	2602770	0	-	0.421875	(0.408,0.44]	chr5	247534	1	UTR5	UTR5:EXON_MRNA	NUP155	ENSG00000113569.16	ENST00000231498.8:ENST00000513532.1:ENST00000507675.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	219	2	4.34822	4.717535	5.08685	6.69108e-7	6.19267e-8	4.85216e-4	1.07836e-4
chr22	46958603	46958703	7537160	0	+	0.54	(0.515,0.57]	chr22	770616	448	INTRON	INTRON	TBC1D22A	ENSG00000054611.14	ENST00000380995.5:ENST00000337137.9:ENST00000407381.7:ENST00000355704.7:ENST00000394449.6:ENST00000441162.5:ENST00000406733.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	34	2	4.51	4.717365	4.92473	0.00809449	0.00108255	0.0766625	0.0300133
chr7	66548585	66548685	3539672	0	-	0.54	(0.515,0.57]	chr7	330242	25	INTRON	INTRON	RABGEF1P1	ENSG00000229180.8	ENST00000639011.1:ENST00000692299.1:ENST00000686269.1:ENST00000649635.1:ENST00000686397.1:ENST00000690339.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	34	2	4.51	4.717365	4.92473	0.00809449	0.00108255	0.0766625	0.0300133
chr8	3090231	3090329	3887036	0	-	0.540816	(0.515,0.57]	chr8	357594	26	INTRON	INTRON	CSMD1	ENSG00000183117.20	ENST00000335551.11:ENST00000635120.2:ENST00000520002.5:ENST00000602557.5:ENST00000400186.7:ENST00000602723.5	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.51	4.717365	4.92473	0.00809449	0.00108255	0.0766625	0.0300133
chr1	235170832	235170931	662261	0	-	0.484848	(0.476,0.515]	chr1	78419	18	INTRON	INTRON	ARID4B	ENSG00000054267.22	ENST00000474953.5:ENST00000349213.7:ENST00000366603.6:ENST00000264183.9:ENST00000421364.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	36	2	4.44128	4.71735	4.99342	0.0151924	0.00139274	0.0994339	0.0341261
chr19	21850567	21850657	7159783	0	-	0.4	(0.378,0.408]	chr19	723811	2	SS5_PROX	SS5_PROX:INTRON	ZNF43	ENSG00000198521.12	ENST00000357491.10:ENST00000594012.5:ENST00000595461.5:ENST00000598381.5:ENST00000596899.1:ENST00000599414.5:ENST00000594312.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	36	2	4.66338	4.7172149999999995	4.77105	0.0103469	0.00330823	0.0850389	0.0527031
chr2	38360996	38361095	1099185	0	-	0.393939	(0.378,0.408]	chr2	117880	15	INTRON	INTRON	ATL2	ENSG00000119787.14	ENST00000378954.9:ENST00000406122.5:ENST00000405384.6:ENST00000402054.5:ENST00000419554.6:ENST00000651368.1:ENST00000452935.6:ENST00000449130.5:ENST00000443098.5:ENST00000456736.5:ENST00000472097.1:ENST00000451483.1:ENST00000416222.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	36	2	4.66338	4.7172149999999995	4.77105	0.0103469	0.00330823	0.0850389	0.0527031
chr2	60801396	60801494	785607	0	+	0.397959	(0.378,0.408]	chr2	88376	44	UTR3	UTR3:EXON_MRNA	PAPOLG	ENSG00000115421.13	ENST00000238714.8:ENST00000412217.1	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.66338	4.7172149999999995	4.77105	0.0103469	0.00330823	0.0850389	0.0527031
chr7	135945101	135945201	3649147	0	-	0.4	(0.378,0.408]	chr7	339202	147	INTRON	INTRON	MTPN	ENSG00000105887.11	ENST00000393085.4:ENST00000435723.1	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.66338	4.7172149999999995	4.77105	0.0103469	0.00330823	0.0850389	0.0527031
chr3	75770323	75770423	1748230	0	-	0.52	(0.515,0.57]	chr3	177549	281	INTRON	INTRON	ZNF717	ENSG00000227124.11	ENST00000648506.1:ENST00000491507.1:ENST00000477374.5:ENST00000652011.2:ENST00000478296.5:ENST00000471541.2:ENST00000468296.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	74	2	4.06976	4.717079999999999	5.3644	1.52226e-4	5.5596e-5	0.0106137	0.00651834
chr2	10178024	10178124	691284	0	+	0.53	(0.515,0.57]	chr2	81109	219	INTRON	INTRON	RRM2	ENSG00000171848.16	ENST00000641498.1:ENST00000381786.7	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	0	34	2	4.5963	4.71697	4.83764	0.00370287	0.00279527	0.0561162	0.0469265
chr2	131304801	131304901	866439	0	+	0.53	(0.515,0.57]	chr2	97330	13	INTRON	INTRON	PLEKHB2:FAR2P4:ENSG00000284604	ENSG00000115762.17:ENSG00000231431.7:ENSG00000284604.1	ENST00000404460.5:ENST00000425399.1:ENST00000641806.1	protein_coding	protein_coding	protein_coding:lncRNA:transcribed_unprocessed_pseudogene	protein_coding:lncRNA:transcribed_unprocessed_pseudogene	0	34	2	4.5963	4.71697	4.83764	0.00370287	0.00279527	0.0561162	0.0469265
chr5	172927697	172927797	2547787	0	+	0.52	(0.515,0.57]	chr5	243242	7	INTRON	INTRON	ERGIC1	ENSG00000113719.17	ENST00000393784.8:ENST00000690799.1:ENST00000686615.1:ENST00000684928.1:ENST00000691612.1:ENST00000687901.1:ENST00000689975.1:ENST00000693299.1:ENST00000687702.1:ENST00000685391.1:ENST00000686955.1:ENST00000692557.1:ENST00000686449.1:ENST00000693572.1:ENST00000519796.5:ENST00000523650.5:ENST00000521392.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	34	2	4.5963	4.71697	4.83764	0.00370287	0.00279527	0.0561162	0.0469265
chr9	122889900	122889990	4338475	0	-	0.533333	(0.515,0.57]	chr9	398772	2	SS5_PROX	SS5_PROX:INTRON	RC3H2	ENSG00000056586.16	ENST00000357244.7:ENST00000373670.5:ENST00000498479.5:ENST00000423239.6:ENST00000335387.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	34	2	4.5963	4.71697	4.83764	0.00370287	0.00279527	0.0561162	0.0469265
chr20	62325802	62325880	7361242	0	-	0.384615	(0.378,0.408]	chr20	750910	3	SS3_PROX	SS3_PROX:INTRON	LAMA5	ENSG00000130702.15	ENST00000252999.7:ENST00000497363.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	75	2	3.79857	4.7166	5.63463	3.59226e-4	2.23525e-4	0.0175484	0.0131533
chr17	57258654	57258754	6632762	0	+	0.53	(0.515,0.57]	chr17	647980	3	SS5_PROX	SS5_PROX:INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000581776.5:ENST00000581523.5:ENST00000674961.1:ENST00000582453.5:ENST00000675656.1:ENST00000322684.7:ENST00000579590.5:ENST00000579531.5:ENST00000676073.1:ENST00000676105.1:ENST00000584476.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	71	2	3.49496	4.7163	5.93764	9.61701e-4	6.58036e-6	0.0282401	0.00181159
chr15	28672627	28672718	5988779	0	+	0.483516	(0.476,0.515]	chr15	569396	4	INTRON	INTRON	HERC2P9	ENSG00000206149.11	ENST00000529624.5:ENST00000530420.5:ENST00000528584.5:ENST00000569226.1	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript:transcribed_unprocessed_pseudogene	1	74	2	3.88989	4.7159949999999995	5.5421	3.56777e-4	1.35929e-4	0.0175154	0.0100405
chr9	88405207	88405307	4152214	0	+	0.47	(0.44,0.476]	chr9	378721	154	INTRON	INTRON	SPIN1	ENSG00000106723.17	ENST00000485804.5:ENST00000469017.6:ENST00000375859.4:ENST00000462844.5:ENST00000485565.6:ENST00000483785.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	36	2	4.43377	4.715795	4.99782	0.0162803	0.0013223	0.101453	0.0333932
chr12	116171101	116171201	5424480	0	-	0.43	(0.408,0.44]	chr12	518263	592	INTRON	INTRON	MED13L	ENSG00000123066.9	ENST00000281928.9:ENST00000650226.1:ENST00000548743.2:ENST00000647567.1:ENST00000551197.2	protein_coding	protein_coding	protein_coding	protein_coding	1	74	2	3.90311	4.715345	5.52758	4.54953e-4	1.24325e-4	0.0196892	0.00952291
chr22	49506585	49506685	7601145	0	-	0.42	(0.408,0.44]	chr22	778566	650	INTRON	INTRON	MIR3667HG	ENSG00000188511.13	ENST00000414287.5:ENST00000416411.1	lncRNA	lncRNA	lncRNA	lncRNA	1	74	2	3.90311	4.715345	5.52758	4.54953e-4	1.24325e-4	0.0196892	0.00952291
chr6	2954091	2954191	3047542	0	-	0.4	(0.378,0.408]	chr6	283562	1	SS5_PROX	SS5_PROX:INTRON	SERPINB6	ENSG00000124570.21	ENST00000643098.1:ENST00000380546.7:ENST00000380539.7:ENST00000380529.5:ENST00000380524.5:ENST00000643314.1:ENST00000646722.1:ENST00000649845.1:ENST00000644178.1:ENST00000612421.3:ENST00000647157.1:ENST00000644697.1:ENST00000616722.4:ENST00000642543.1:ENST00000644388.1:ENST00000380520.6:ENST00000645580.1:ENST00000644693.1:ENST00000644828.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	36	2	4.58427	4.71527	4.84627	0.0128325	0.00254319	0.0926667	0.0465056
chr12	98600527	98600627	5199059	0	+	0.51	(0.476,0.515]	chr12	491875	4	SS5_PROX	SS5_PROX:INTRON	SLC25A3	ENSG00000075415.15	ENST00000401722.7:ENST00000188376.9:ENST00000551917.5:ENST00000546766.5:ENST00000228318.8:ENST00000552981.6:ENST00000551123.5:ENST00000549338.5:ENST00000548847.1:ENST00000548480.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	77	2	3.29939	4.71519	6.13099	0.00211868	2.19436e-5	0.0425644	0.00381314
chr2	169585399	169585498	906480	0	+	0.50505	(0.476,0.515]	chr2	100017	1	INTRON	INTRON	PPIG	ENSG00000138398.17	ENST00000678088.1:ENST00000677392.1:ENST00000433207.6:ENST00000679324.1:ENST00000414307.6:ENST00000676508.1:ENST00000260970.8:ENST00000678695.1:ENST00000409714.7:ENST00000530152.5:ENST00000677750.1:ENST00000676557.1:ENST00000678721.1:ENST00000462903.6:ENST00000676756.1:ENST00000679107.1:ENST00000678499.1:ENST00000678638.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	77	2	3.29939	4.71519	6.13099	0.00211868	2.19436e-5	0.0425644	0.00381314
chr1	31304572	31304671	61235	0	+	0.454545	(0.44,0.476]	chr1	7820	70	INTRON	INTRON	ZCCHC17	ENSG00000121766.16	ENST00000618216.4:ENST00000546109.5:ENST00000616393.4:ENST00000616859.4:ENST00000615916.4:ENST00000479629.5:ENST00000373714.5:ENST00000344147.10:ENST00000627541.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	36	2	4.53034	4.7151700000000005	4.9	0.00672609	0.00423315	0.0738715	0.0572185
chr17	80797107	80797207	6687317	0	+	0.47	(0.44,0.476]	chr17	653447	52	INTRON	INTRON	RPTOR	ENSG00000141564.15	ENST00000574767.5:ENST00000577161.5:ENST00000306801.8:ENST00000570891.5:ENST00000544334.6:ENST00000575542.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	36	2	4.53034	4.7151700000000005	4.9	0.00672609	0.00423315	0.0738715	0.0572185
chr8	17995512	17995611	3708496	0	+	0.323232	(0.32,0.35]	chr8	343990	15	INTRON	INTRON	PCM1	ENSG00000078674.19	ENST00000325083.13:ENST00000519253.5:ENST00000524226.5:ENST00000522275.5	protein_coding	protein_coding	protein_coding	protein_coding	3	129	2	2.9371	4.71485	6.4926	3.44654e-4	1.53509e-5	0.0165103	0.00314621
chr3	101337008	101337068	1756794	0	-	0.35	(0.32,0.35]	chr3	178242	1	SS5_PROX	SS5_PROX:INTRON	SENP7	ENSG00000138468.16	ENST00000394095.7:ENST00000314261.11:ENST00000394094.6:ENST00000394091.5:ENST00000348610.3	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.36755	4.71447	5.06139	0.0300552	0.00179023	0.129138	0.0392749
chr4	128854046	128854145	2044717	0	+	0.343434	(0.32,0.35]	chr4	203029	14	INTRON	INTRON	JADE1	ENSG00000077684.16	ENST00000226319.11:ENST00000511647.5:ENST00000452328.6:ENST00000512960.5:ENST00000610919.4:ENST00000413543.6:ENST00000611140.4	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.36755	4.71447	5.06139	0.0300552	0.00179023	0.129138	0.0392749
chr9	120864416	120864516	4335852	0	-	0.34	(0.32,0.35]	chr9	398359	3	SS3_PROX	SS3_PROX:INTRON	PHF19	ENSG00000119403.15	ENST00000373896.8:ENST00000419155.5:ENST00000616568.5:ENST00000487555.5:ENST00000464712.1:ENST00000453868.5:ENST00000474402.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	38	2	4.36755	4.71447	5.06139	0.0300552	0.00179023	0.129138	0.0392749
chr21	38075756	38075856	7463639	0	-	0.2	[0,0.28]	chr21	760281	206	INTRON	INTRON	DSCR4	ENSG00000184029.9	ENST00000398948.5:ENST00000328264.7	lncRNA	lncRNA	lncRNA	lncRNA	4	169	2	2.79678	4.714119999999999	6.63146	4.25186e-4	5.00112e-5	0.018441	0.00611722
chr3	191449476	191449575	1590422	0	+	0.40404	(0.378,0.408]	chr3	164637	235	INTRON	INTRON	ENSG00000223812	ENSG00000223812.8	ENST00000657540.1:ENST00000439804.6:ENST00000663647.1:ENST00000668751.1:ENST00000666632.1:ENST00000664732.1:ENST00000662007.1:ENST00000641158.1:ENST00000664994.1:ENST00000669884.1:ENST00000642133.1:ENST00000656380.1:ENST00000641055.1:ENST00000662578.1:ENST00000661668.1:ENST00000658347.1:ENST00000661029.1:ENST00000651548.2:ENST00000669360.1:ENST00000653490.1:ENST00000656942.1:ENST00000666456.1:ENST00000668276.1:ENST00000671595.1:ENST00000660290.1	lncRNA	lncRNA	lncRNA	lncRNA	0	37	2	4.42349	4.714040000000001	5.00459	0.00992961	0.00371142	0.0877296	0.0535094
chrX	3840346	3840446	7746984	0	-	0.38	(0.378,0.408]	chrX	793085	106	INTRON	INTRON	ENSG00000285756	ENSG00000285756.2	ENST00000648217.1:ENST00000425492.5:ENST00000662024.1:ENST00000490920.2:ENST00000475317.5:ENST00000671583.1	lncRNA	lncRNA	lncRNA	lncRNA	0	37	2	4.42349	4.714040000000001	5.00459	0.00992961	0.00371142	0.0877296	0.0535094
chr11	5304477	5304577	4896254	0	-	0.35	(0.32,0.35]	chr11	459148	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	HBG2:ENSG00000239920:HBE1:OR51B5	ENSG00000196565.15:ENSG00000239920.2:ENSG00000213931.7:ENSG00000167355.8	ENST00000380252.6:ENST00000380259.7:ENST00000646569.1:ENST00000643199.1:ENST00000292896.3:ENST00000380237.5:ENST00000420726.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	38	2	4.46758	4.713645	4.95971	0.0119306	0.00663522	0.0962115	0.0703181
chr17	61898929	61899027	6809306	0	-	0.326531	(0.32,0.35]	chr17	672733	8	INTRON	INTRON	INTS2	ENSG00000108506.13	ENST00000251334.7:ENST00000617492.4:ENST00000444766.7:ENST00000646745.1:ENST00000647009.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	38	2	4.46758	4.713645	4.95971	0.0119306	0.00663522	0.0962115	0.0703181
chr2	42179533	42179633	758594	0	+	0.34	(0.32,0.35]	chr2	86121	95	INTRON	INTRON	EML4	ENSG00000143924.19	ENST00000318522.10:ENST00000402711.6:ENST00000409040.1:ENST00000482660.1:ENST00000401738.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	38	2	4.46758	4.713645	4.95971	0.0119306	0.00663522	0.0962115	0.0703181
chr6	170710906	170711006	3038562	0	+	0.33	(0.32,0.35]	chr6	283181	723	INTRON	INTRON	ENSG00000230423	ENSG00000230423.3	ENST00000656791.1:ENST00000426839.2	lncRNA	lncRNA	lncRNA	lncRNA	1	82	2	3.3721	4.713425	6.05475	0.00182912	1.2096e-4	0.0396683	0.00992813
chr20	32151863	32151961	7254744	0	+	0.5	(0.476,0.515]	chr20	736904	6	INTRON	INTRON	TM9SF4	ENSG00000101337.16	ENST00000398022.7:ENST00000217315.9	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.21964	4.713045	5.20645	0.0167715	0.00136049	0.110511	0.0336321
chr22	16648725	16648825	7473840	0	+	0.48	(0.476,0.515]	chr22	762026	3	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	TPTEP1	ENSG00000100181.22	ENST00000558085.6:ENST00000400593.6:ENST00000426585.5:ENST00000383140.7	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	38	2	4.21964	4.713045	5.20645	0.0167715	0.00136049	0.110511	0.0336321
chr7	96182680	96182780	3574851	0	-	0.34	(0.32,0.35]	chr7	333015	108	INTRON	INTRON	SLC25A13	ENSG00000004864.14	ENST00000265631.10:ENST00000416240.6:ENST00000490072.5:ENST00000484495.5:ENST00000492869.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	87	2	3.54926	4.71277	5.87628	0.00133843	5.28936e-5	0.0335491	0.00592337
chr10	18660183	18660282	4404084	0	+	0.313131	(0.28,0.32]	chr10	406367	1	INTRON	INTRON	ARL5B	ENSG00000165997.5	ENST00000377275.4	protein_coding	protein_coding	protein_coding	protein_coding	3	138	2	3.24034	4.712625	6.18491	1.24314e-4	8.13486e-5	0.0100328	0.00755207
chr17	37309858	37309958	6762074	0	-	0.45	(0.44,0.476]	chr17	664944	102	INTRON	INTRON	ACACA	ENSG00000278540.5	ENST00000616317.5:ENST00000614428.4:ENST00000613146.4:ENST00000615229.4:ENST00000621960.1:ENST00000617548.1:ENST00000616352.4:ENST00000614789.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	79	2	3.74925	4.71242	5.67559	4.08974e-4	6.34721e-5	0.0185763	0.00658818
chr2	127492188	127492288	1224391	0	-	0.43	(0.408,0.44]	chr2	130340	1	SS3_PROX	SS3_PROX:INTRON	IWS1	ENSG00000163166.15	ENST00000637187.1:ENST00000295321.9	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.53088	4.7120750000000005	4.89327	0.00669275	0.00458906	0.0738715	0.0595107
chr3	50049999	50050097	1424064	0	+	0.428571	(0.408,0.44]	chr3	150005	13	INTRON	INTRON	RBM6	ENSG00000004534.15	ENST00000442092.5:ENST00000443081.5:ENST00000419610.5:ENST00000441115.5:ENST00000422955.5:ENST00000454079.5:ENST00000266022.9:ENST00000425608.5:ENST00000434592.5:ENST00000464013.5:ENST00000483350.1:ENST00000446471.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	36	2	4.53088	4.7120750000000005	4.89327	0.00669275	0.00458906	0.0738715	0.0595107
chr7	128318406	128318506	3634992	0	-	0.42	(0.408,0.44]	chr7	337844	3	SS3_PROX	SS3_PROX:INTRON	RBM28	ENSG00000106344.8	ENST00000223073.6:ENST00000481788.1:ENST00000415472.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	36	2	4.53088	4.7120750000000005	4.89327	0.00669275	0.00458906	0.0738715	0.0595107
chr16	209126	209218	6425984	0	-	0.467391	(0.44,0.476]	chr16	617436	6	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	LUC7L	ENSG00000007392.17	ENST00000337351.8:ENST00000426094.5:ENST00000397783.5:ENST00000629543.2:ENST00000490762.5:ENST00000293872.13:ENST00000464711.5:ENST00000419516.5:ENST00000397780.5:ENST00000418978.5:ENST00000430864.5:ENST00000443357.5:ENST00000494366.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	342	2	4.35298	4.712014999999999	5.07105	6.69154e-8	6.72282e-10	1.09911e-4	5.41199e-6
chr1	54383383	54383483	463531	0	-	0.36	(0.35,0.378]	chr1	55784	267	INTRON	INTRON	SSBP3	ENSG00000157216.16	ENST00000610401.5:ENST00000357475.9:ENST00000371319.8:ENST00000417664.7:ENST00000533946.6:ENST00000371320.8:ENST00000525990.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	124	2	3.20728	4.711975	6.21667	6.89387e-5	3.48826e-5	0.00688351	0.00499276
chr6	57153275	57153360	2878708	0	+	0.305882	(0.28,0.32]	chr6	273312	6	INTRON	INTRON	ZNF451	ENSG00000112200.17	ENST00000357489.7:ENST00000370706.9:ENST00000491832.6:ENST00000504603.1:ENST00000508548.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	39	2	4.33765	4.711935	5.08622	0.039714	0.00227525	0.143072	0.0437013
chr1	3878122	3878221	3530	0	+	0.484848	(0.476,0.515]	chr1	757	46	INTRON	INTRON	DFFB	ENSG00000169598.17	ENST00000338895.7:ENST00000491998.5:ENST00000468793.5:ENST00000339350.7:ENST00000477548.5:ENST00000378209.8:ENST00000378206.5:ENST00000475969.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	37	2	4.32915	4.71169	5.09423	0.0124637	0.00204588	0.0973643	0.04086
chr19	57825025	57825124	7105776	0	+	0.494949	(0.476,0.515]	chr19	713201	41	INTRON	INTRON	ENSG00000268750:ZNF587B	ENSG00000268750.7:ENSG00000269343.9	ENST00000597134.5:ENST00000651253.2:ENST00000596498.2:ENST00000593873.6:ENST00000603271.1:ENST00000594328.1:ENST00000598031.1	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	4.32915	4.71169	5.09423	0.0124637	0.00204588	0.0973643	0.04086
chr3	150612042	150612141	1534534	0	+	0.50505	(0.476,0.515]	chr3	159930	80	INTRON	INTRON	SELENOT	ENSG00000198843.14	ENST00000480740.5:ENST00000477889.5:ENST00000471696.6:ENST00000492132.1:ENST00000485923.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	37	2	4.32915	4.71169	5.09423	0.0124637	0.00204588	0.0973643	0.04086
chr8	129455383	129455482	4059827	0	-	0.30303	(0.28,0.32]	chr8	369596	113	INTRON	INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1:ENST00000676273.1:ENST00000667643.1:ENST00000668791.1:ENST00000663716.1:ENST00000663572.1:ENST00000676148.1:ENST00000667962.1:ENST00000674877.1:ENST00000675316.1:ENST00000674656.1:ENST00000446592.7:ENST00000667341.1:ENST00000675186.1:ENST00000652971.1:ENST00000661447.1:ENST00000674863.1:ENST00000675498.1:ENST00000675527.1:ENST00000676108.1:ENST00000657647.1:ENST00000675589.1:ENST00000675913.1:ENST00000675109.1:ENST00000671632.1:ENST00000671311.1:ENST00000676099.1:ENST00000660652.1:ENST00000675522.1:ENST00000675183.1:ENST00000658861.1:ENST00000663991.1:ENST00000675044.1:ENST00000675435.1:ENST00000674639.1:ENST00000676069.1:ENST00000675532.1:ENST00000674762.1:ENST00000523151.6:ENST00000675948.1:ENST00000665364.1:ENST00000657251.1:ENST00000675166.1:ENST00000674883.1:ENST00000675867.1:ENST00000674580.1:ENST00000675393.1:ENST00000520048.1:ENST00000674906.1:ENST00000676030.1:ENST00000670588.1:ENST00000675072.1:ENST00000664936.1:ENST00000652914.1:ENST00000657069.1	lncRNA	lncRNA	lncRNA	lncRNA	1	84	2	3.581	4.71169	5.84238	8.63544e-4	5.0114e-4	0.0266494	0.0206993
chr10	18638377	18638477	4570583	0	-	0.46	(0.44,0.476]	chr10	421519	217	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7:ENST00000606425.2	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.22393	4.711365000000001	5.1988	0.0162322	0.00151532	0.109464	0.0352794
chr8	124510776	124510876	4043879	0	-	0.45	(0.44,0.476]	chr8	368890	17	INTRON	INTRON	TATDN1	ENSG00000147687.19	ENST00000522927.5:ENST00000276692.11:ENST00000630259.1:ENST00000523214.5:ENST00000519548.5:ENST00000522810.5:ENST00000517678.5:ENST00000519776.5:ENST00000521546.5:ENST00000521973.5:ENST00000605953.5:ENST00000522310.5:ENST00000520321.5:ENST00000519232.5:ENST00000520938.3:ENST00000523888.5:ENST00000523152.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	38	2	4.22393	4.711365000000001	5.1988	0.0162322	0.00151532	0.109464	0.0352794
chr21	36879862	36879962	7460692	0	-	0.37	(0.35,0.378]	chr21	760114	1122	INTRON	INTRON	HLCS	ENSG00000159267.17	ENST00000674895.3:ENST00000336648.8:ENST00000612277.4:ENST00000399120.5:ENST00000675307.1:ENST00000675057.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	77	2	3.80701	4.711225000000001	5.61544	5.06729e-4	2.34133e-4	0.020816	0.0135358
chr13	112878898	112878994	5548177	0	+	0.28125	(0.28,0.32]	chr13	530090	2	INTRON	INTRON	ATP11A	ENSG00000068650.19	ENST00000375645.8:ENST00000375630.6:ENST00000487903.5:ENST00000471555.5:ENST00000415301.2:ENST00000419631.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	39	2	4.4334	4.71106	4.98872	0.0163355	0.00838468	0.109464	0.0774402
chr22	26533440	26533538	7564491	0	-	0.418367	(0.408,0.44]	chr22	774007	3	INTRON	INTRON	TPST2	ENSG00000128294.16	ENST00000338754.9:ENST00000403880.5:ENST00000398110.6	protein_coding	protein_coding	protein_coding	protein_coding	1	76	2	3.36378	4.71106	6.05834	0.0016048	4.06336e-5	0.0367961	0.00539487
chr3	177098365	177098465	1871446	0	-	0.31	(0.28,0.32]	chr3	187394	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	TBL1XR1	ENSG00000177565.18	ENST00000457928.7:ENST00000430069.5:ENST00000673974.1:ENST00000631253.2:ENST00000352800.10:ENST00000422442.6:ENST00000428970.5:ENST00000424913.5:ENST00000437738.5:ENST00000431421.5:ENST00000635794.1:ENST00000630796.2:ENST00000450267.5:ENST00000630833.2:ENST00000431674.5:ENST00000422066.5:ENST00000443315.5:ENST00000627825.2:ENST00000427349.5:ENST00000413084.5:ENST00000637137.1:ENST00000491623.2:ENST00000637544.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	39	2	4.4334	4.71106	4.98872	0.0163355	0.00838468	0.109464	0.0774402
chr20	1453812	1453912	7305499	0	-	0.36	(0.35,0.378]	chr20	743727	2	SS5_PROX	SS5_PROX:INTRON	NSFL1C	ENSG00000088833.18	ENST00000476071.5:ENST00000555944.5:ENST00000353088.6:ENST00000461211.5:ENST00000216879.9:ENST00000381653.9:ENST00000555568.5:ENST00000470376.5:ENST00000553571.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	37	2	4.39303	4.710675	5.02832	0.0237246	0.00156444	0.118716	0.0365263
chr12	28256378	28256478	5100933	0	+	0.31	(0.28,0.32]	chr12	481923	3	SS5_PROX	SS5_PROX:INTRON	CCDC91	ENSG00000123106.11	ENST00000540794.5:ENST00000538586.5:ENST00000536154.5:ENST00000535520.5:ENST00000539107.5:ENST00000544649.5:ENST00000545336.5:ENST00000536442.6:ENST00000543534.5:ENST00000543809.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	38	2	4.58875	4.7102	4.83165	0.0230574	0.00527257	0.118056	0.0656295
chr12	62469703	62469803	5151188	0	+	0.32	(0.28,0.32]	chr12	487451	20	INTRON	INTRON	MON2	ENSG00000061987.16	ENST00000641654.1:ENST00000546600.5:ENST00000393630.8:ENST00000549378.5:ENST00000547095.5:ENST00000552738.5:ENST00000393629.6:ENST00000552115.5:ENST00000549286.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	38	2	4.58875	4.7102	4.83165	0.0230574	0.00527257	0.118056	0.0656295
chr12	96377116	96377216	5395052	0	-	0.32	(0.28,0.32]	chr12	514463	419	INTRON	INTRON	CDK17	ENSG00000059758.8	ENST00000261211.8:ENST00000543119.6:ENST00000542666.5:ENST00000551816.5:ENST00000552496.5:ENST00000552262.1	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.58875	4.7102	4.83165	0.0230574	0.00527257	0.118056	0.0656295
chr5	54190822	54190922	2619720	0	-	0.32	(0.28,0.32]	chr5	248860	185	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2:ENST00000505630.5:ENST00000505383.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	38	2	4.58875	4.7102	4.83165	0.0230574	0.00527257	0.118056	0.0656295
chr6	90526872	90526972	3162180	0	-	0.32	(0.28,0.32]	chr6	294916	27	INTRON	INTRON	MAP3K7	ENSG00000135341.18	ENST00000369332.7:ENST00000369327.7:ENST00000369325.7:ENST00000369329.8:ENST00000479630.1:ENST00000369320.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	38	2	4.58875	4.7102	4.83165	0.0230574	0.00527257	0.118056	0.0656295
chr2	111840811	111840911	1214430	0	-	0.47	(0.44,0.476]	chr2	129148	19	INTRON	INTRON	ANAPC1	ENSG00000153107.13	ENST00000427997.5:ENST00000341068.8	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	4.33346	4.710025	5.08659	0.0120349	0.00226401	0.0962115	0.0425438
chr3	47512374	47512474	1683056	0	-	0.45	(0.44,0.476]	chr3	171945	1	SS3_PROX	SS3_PROX:INTRON	ELP6	ENSG00000163832.16	ENST00000296149.9:ENST00000442215.6:ENST00000439305.5:ENST00000444760.5:ENST00000445044.5:ENST00000494161.1:ENST00000449409.5:ENST00000414236.5:ENST00000485029.5:ENST00000483205.1:ENST00000460502.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	37	2	4.33346	4.710025	5.08659	0.0120349	0.00226401	0.0962115	0.0425438
chr3	197738067	197738166	1597203	0	+	0.313131	(0.28,0.32]	chr3	165480	4	INTRON	INTRON	FYTTD1	ENSG00000122068.13	ENST00000428738.5	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.68527	4.710005000000001	4.73474	0.0162835	0.00819419	0.101453	0.0810802
chr1	19314853	19314951	39104	0	+	0.377551	(0.35,0.378]	chr1	4683	16	INTRON	INTRON	SLC66A1	ENSG00000040487.13	ENST00000375153.8:ENST00000375155.7:ENST00000469076.5:ENST00000400548.6:ENST00000497827.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	37	2	4.49626	4.709905	4.92355	0.00917582	0.00573514	0.0855292	0.0657377
chr2	61493333	61493426	1130752	0	-	0.376344	(0.35,0.378]	chr2	121561	4	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	XPO1	ENSG00000082898.19	ENST00000677110.1:ENST00000678113.1:ENST00000676553.1:ENST00000677556.1:ENST00000677814.1:ENST00000676771.1:ENST00000677803.1:ENST00000677239.1:ENST00000678790.1:ENST00000677928.1:ENST00000678182.1:ENST00000677150.1:ENST00000678172.1:ENST00000678360.1:ENST00000678081.1:ENST00000676889.1:ENST00000676783.1:ENST00000679035.1:ENST00000677422.1:ENST00000677417.1:ENST00000677813.1:ENST00000676999.1:ENST00000676667.1:ENST00000678263.1:ENST00000678877.1:ENST00000677933.1:ENST00000680228.1:ENST00000677289.1:ENST00000677190.1:ENST00000481073.6:ENST00000677476.1:ENST00000469337.2:ENST00000401558.7:ENST00000428210.5:ENST00000677290.1:ENST00000677850.1:ENST00000676778.1:ENST00000451765.6:ENST00000676789.1:ENST00000678741.1:ENST00000404992.6:ENST00000406957.5:ENST00000677157.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	37	2	4.49626	4.709905	4.92355	0.00917582	0.00573514	0.0855292	0.0657377
chrX	24727474	24727571	7632033	0	+	0.371134	(0.35,0.378]	chrX	781653	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	POLA1	ENSG00000101868.13	ENST00000672178.1:ENST00000379068.8:ENST00000677890.1:ENST00000379059.7:ENST00000611764.2:ENST00000493342.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	37	2	4.49626	4.709905	4.92355	0.00917582	0.00573514	0.0855292	0.0657377
chr1	149990964	149991064	550206	0	-	0.41	(0.408,0.44]	chr1	64628	130	INTRON	INTRON	OTUD7B	ENSG00000264522.6	ENST00000581312.6:ENST00000417191.2	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.12187	4.70983	5.29779	0.0354689	3.80479e-4	0.137535	0.0176313
chr1	171527844	171527944	253649	0	+	0.24	[0,0.28]	chr1	30150	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	PRRC2C	ENSG00000117523.18	ENST00000647382.2:ENST00000367742.7:ENST00000476522.5:ENST00000338920.8:ENST00000426496.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	40	2	4.38387	4.7097750000000005	5.03568	0.0501911	0.00446141	0.156383	0.0610799
chr11	68476597	68476697	4817491	0	+	0.21	[0,0.28]	chr11	448907	154	INTRON	INTRON	PPP6R3	ENSG00000110075.15	ENST00000530427.5:ENST00000528635.5:ENST00000529907.5:ENST00000533127.5:ENST00000534534.5:ENST00000529344.5:ENST00000524845.5:ENST00000393800.7:ENST00000265637.8:ENST00000524904.5:ENST00000393801.7:ENST00000265636.9:ENST00000529710.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	40	2	4.38387	4.7097750000000005	5.03568	0.0501911	0.00446141	0.156383	0.0610799
chr16	20838068	20838167	6318286	0	+	0.252525	[0,0.28]	chr16	604760	46	INTRON	INTRON	REXO5	ENSG00000005189.20	ENST00000566993.5:ENST00000348433.10:ENST00000261377.11:ENST00000564274.5:ENST00000561474.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	40	2	4.38387	4.7097750000000005	5.03568	0.0501911	0.00446141	0.156383	0.0610799
chr5	79649190	79649290	2399108	0	+	0.28	[0,0.28]	chr5	231736	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	TENT2	ENSG00000164329.14	ENST00000423041.6:ENST00000504233.5:ENST00000453514.6:ENST00000428308.6:ENST00000296783.7:ENST00000504982.1:ENST00000513735.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	40	2	4.38387	4.7097750000000005	5.03568	0.0501911	0.00446141	0.156383	0.0610799
chr20	17969470	17969555	7243215	0	+	0.611765	(0.57,1]	chr20	735408	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MGME1	ENSG00000125871.14	ENST00000377710.10:ENST00000377709.1:ENST00000377704.4	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.37136	4.70973	5.0481	0.00345135	1.32594e-4	0.0517761	0.00992554
chr19	4434631	4434730	7002099	0	+	0.353535	(0.35,0.378]	chr19	694580	7	INTRON	INTRON	CHAF1A	ENSG00000167670.16	ENST00000301280.10	protein_coding	protein_coding	protein_coding	protein_coding	1	83	2	3.51348	4.70964	5.9058	0.00136294	2.99525e-5	0.0336321	0.0043593700000000004
chr11	66791931	66792029	4811821	0	+	0.489796	(0.476,0.515]	chr11	447962	33	INTRON	INTRON	C11orf80	ENSG00000173715.18	ENST00000524551.5:ENST00000525908.6:ENST00000540737.7:ENST00000527634.5:ENST00000527368.5:ENST00000531400.6:ENST00000642265.1:ENST00000532565.6:ENST00000525449.6:ENST00000360962.10:ENST00000532727.5:ENST00000532089.5:ENST00000526260.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	117	2	3.05234	4.709490000000001	6.36664	1.48283e-4	6.14294e-6	0.0105822	0.00185892
chr1	155666944	155667042	563090	0	-	0.326531	(0.32,0.35]	chr1	67145	52	INTRON	INTRON	YY1AP1	ENSG00000163374.20	ENST00000368339.9:ENST00000295566.8:ENST00000368330.6:ENST00000436865.5:ENST00000359205.9:ENST00000407221.5:ENST00000404643.5:ENST00000361140.8:ENST00000361831.9:ENST00000347088.9:ENST00000354691.9:ENST00000368340.9:ENST00000311573.9:ENST00000442834.6:ENST00000355499.9:ENST00000405763.7:ENST00000488784.5:ENST00000493625.5:ENST00000477470.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	83	2	3.28107	4.709325	6.13758	0.00262488	8.35107e-5	0.0470772	0.00815123
chr1	25483016	25483116	48474	0	+	0.39	(0.378,0.408]	chr1	5949	238	INTRON	INTRON	MACO1	ENSG00000204178.11	ENST00000399766.7:ENST00000374343.5:ENST00000647928.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	36	2	4.50056	4.709160000000001	4.91776	0.015974	0.00196368	0.101453	0.0411469
chr17	42484021	42484118	6611552	0	+	0.391753	(0.378,0.408]	chr17	644122	5	INTRON	INTRON	ATP6V0A1	ENSG00000033627.17	ENST00000393829.6:ENST00000343619.9:ENST00000537728.5:ENST00000264649.10:ENST00000585525.5:ENST00000544137.5:ENST00000587882.5:ENST00000589759.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	36	2	4.50056	4.709160000000001	4.91776	0.015974	0.00196368	0.101453	0.0411469
chr3	32687836	32687936	1393133	0	+	0.38	(0.378,0.408]	chr3	145836	1	SS5_PROX	SS5_PROX:INTRON	CNOT10	ENSG00000182973.20	ENST00000331889.10:ENST00000328834.10:ENST00000435630.5:ENST00000494439.5:ENST00000556853.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	36	2	4.50056	4.709160000000001	4.91776	0.015974	0.00196368	0.101453	0.0411469
chr3	88165955	88166055	1458060	0	+	0.4	(0.378,0.408]	chr3	153232	81	INTRON	INTRON	C3orf38	ENSG00000179021.10	ENST00000485219.1	protein_coding	processed_transcript	protein_coding	processed_transcript	0	36	2	4.50056	4.709160000000001	4.91776	0.015974	0.00196368	0.101453	0.0411469
chr6	107458589	107458689	3181904	0	-	0.38	(0.378,0.408]	chr6	296347	2	SS5_PROX	SS5_PROX:INTRON	PDSS2	ENSG00000164494.12	ENST00000369037.9:ENST00000369031.4	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.50056	4.709160000000001	4.91776	0.015974	0.00196368	0.101453	0.0411469
chr7	22687809	22687909	3500257	0	-	0.4	(0.378,0.408]	chr7	326683	224	INTRON	INTRON	STEAP1B	ENSG00000105889.16	ENST00000650428.1	protein_coding	processed_transcript	protein_coding	processed_transcript	0	36	2	4.50056	4.709160000000001	4.91776	0.015974	0.00196368	0.101453	0.0411469
chr19	9674818	9674912	7133502	0	-	0.638298	(0.57,1]	chr19	718914	3	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	ZNF562	ENSG00000171466.10	ENST00000453372.7:ENST00000293648.8:ENST00000590155.5:ENST00000585688.5:ENST00000587392.5:ENST00000588653.5:ENST00000589542.1:ENST00000585350.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	28	2	4.44366	4.70912	4.97458	0.00210922	2.67728e-4	0.0425419	0.0149989
chr6	170630035	170630135	3037752	0	+	0.24	[0,0.28]	chr6	283177	23	INTRON	INTRON	ENSG00000287411:ENSG00000230423	ENSG00000287411.1:ENSG00000230423.3	ENST00000667394.1:ENST00000656791.1:ENST00000426839.2	lncRNA	lncRNA	lncRNA	lncRNA	0	40	2	4.47254	4.709075	4.94561	0.020991	0.0150263	0.122348	0.0994339
chr7	105041722	105041822	3374899	0	+	0.22	[0,0.28]	chr7	315877	3	INTRON	INTRON	KMT2E	ENSG00000005483.22	ENST00000622386.2:ENST00000257745.9:ENST00000334884.9:ENST00000311117.8:ENST00000478990.5:ENST00000495267.5:ENST00000476671.5:ENST00000667857.1:ENST00000474203.5:ENST00000482560.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	236	2	2.3659	4.708895	7.05189	6.02968e-4	7.41155e-6	0.0223465	0.00205092
chr10	15161016	15161116	4562650	0	-	0.39	(0.378,0.408]	chr10	421125	191	INTRON	INTRON	NMT2	ENSG00000152465.18	ENST00000378165.9:ENST00000378150.1	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.60771	4.7086950000000005	4.80968	0.00679828	0.00567576	0.0711802	0.0678837
chr18	21537466	21537563	6954468	0	-	0.381443	(0.378,0.408]	chr18	687974	9	INTRON	INTRON	ESCO1	ENSG00000141446.11	ENST00000269214.10:ENST00000383276.1:ENST00000622333.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	36	2	4.60771	4.7086950000000005	4.80968	0.00679828	0.00567576	0.0711802	0.0678837
chr15	50909623	50909721	6023156	0	+	0.428571	(0.408,0.44]	chr15	574061	3	INTRON	INTRON	AP4E1	ENSG00000081014.11	ENST00000561441.5:ENST00000561393.5:ENST00000558439.5:ENST00000261842.10:ENST00000560508.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	38	2	4.22447	4.708245	5.19202	0.0161655	0.0016671	0.109464	0.0369207
chr17	47177262	47177362	6789273	0	-	0.43	(0.408,0.44]	chr17	669633	48	INTRON	INTRON	CDC27	ENSG00000004897.12	ENST00000066544.8:ENST00000531206.5:ENST00000533415.5:ENST00000527547.5:ENST00000526866.5:ENST00000525495.6:ENST00000573550.5:ENST00000575483.5:ENST00000532893.5:ENST00000528748.5:ENST00000532575.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	37	2	4.23096	4.7081599999999995	5.18536	0.0278028	6.17381e-4	0.123904	0.0223951
chr8	55768477	55768577	3954620	0	-	0.43	(0.408,0.44]	chr8	362702	41	INTRON	INTRON	TMEM68	ENSG00000167904.16	ENST00000334667.6:ENST00000434581.7:ENST00000519784.5:ENST00000523073.5:ENST00000519780.5:ENST00000522090.5:ENST00000523423.5:ENST00000520414.5:ENST00000521229.5:ENST00000522576.5:ENST00000523180.5	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	4.23096	4.7081599999999995	5.18536	0.0278028	6.17381e-4	0.123904	0.0223951
chr9	131509742	131509756	4218153	0	+	0.428571	(0.408,0.44]	chr9	386920	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	POMT1	ENSG00000130714.19	ENST00000372228.9:ENST00000341012.13:ENST00000677216.1:ENST00000676640.1:ENST00000402686.8:ENST00000441334.5:ENST00000677029.1:ENST00000677729.1:ENST00000684579.1:ENST00000678833.1:ENST00000677853.1:ENST00000683392.1:ENST00000678548.1:ENST00000679023.1:ENST00000679111.1:ENST00000676803.1:ENST00000678942.2:ENST00000676915.1:ENST00000677586.1:ENST00000677293.1:ENST00000677626.1:ENST00000678303.1:ENST00000678707.1:ENST00000372220.5:ENST00000676835.1:ENST00000678546.1:ENST00000683712.1:ENST00000415075.6:ENST00000430619.2:ENST00000448212.5:ENST00000404875.7:ENST00000677028.1:ENST00000678366.1:ENST00000677295.2:ENST00000677099.1:ENST00000682070.1:ENST00000678739.1:ENST00000678626.1:ENST00000679189.1:ENST00000677677.1:ENST00000678264.2:ENST00000682813.1:ENST00000423007.6:ENST00000683900.1:ENST00000679076.1:ENST00000684062.1:ENST00000462375.7:ENST00000677444.1:ENST00000677944.1:ENST00000678693.1:ENST00000683134.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	37	2	4.23096	4.7081599999999995	5.18536	0.0278028	6.17381e-4	0.123904	0.0223951
chr1	1855676	1855776	362487	0	-	0.39	(0.378,0.408]	chr1	42311	156	INTRON	INTRON	GNB1	ENSG00000078369.18	ENST00000610897.4:ENST00000615252.4:ENST00000378609.9:ENST00000439272.6:ENST00000434686.6:ENST00000472614.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	75	2	3.56208	4.7074750000000005	5.85287	6.94246e-4	1.39037e-4	0.0240761	0.0107072
chr1	151628320	151628420	225883	0	+	0.34	(0.32,0.35]	chr1	25862	135	INTRON	INTRON	SNX27	ENSG00000143376.14	ENST00000642376.1:ENST00000368843.8:ENST00000458013.7:ENST00000368841.7:ENST00000642479.1:ENST00000642349.1:ENST00000643179.1:ENST00000643814.1:ENST00000642582.1:ENST00000644970.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	37	2	4.61889	4.706855	4.79482	0.0166646	0.00447781	0.102621	0.0610799
chr10	103405372	103405428	4516293	0	+	0.321429	(0.32,0.35]	chr10	416376	1	SS5_PROX	SS5_PROX:INTRON	PDCD11	ENSG00000148843.15	ENST00000369797.8:ENST00000649849.1	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	4.61889	4.706855	4.79482	0.0166646	0.00447781	0.102621	0.0610799
chr17	82841492	82841592	6695110	0	+	0.35	(0.32,0.35]	chr17	654907	104	INTRON	INTRON	TBCD	ENSG00000141556.22	ENST00000682479.1:ENST00000682722.1:ENST00000684464.1:ENST00000684544.1:ENST00000681983.1:ENST00000684361.1:ENST00000683184.1:ENST00000683282.1:ENST00000684408.1:ENST00000355528.9:ENST00000683444.1:ENST00000684776.1:ENST00000683041.1:ENST00000684760.1:ENST00000684349.1:ENST00000682213.1:ENST00000683009.1:ENST00000682921.1:ENST00000539345.6:ENST00000684000.1:ENST00000684188.1:ENST00000684429.1:ENST00000682610.1:ENST00000683821.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	37	2	4.61889	4.706855	4.79482	0.0166646	0.00447781	0.102621	0.0610799
chr2	30562990	30563089	727983	0	+	0.333333	(0.32,0.35]	chr2	84011	3	INTRON	INTRON	LCLAT1	ENSG00000172954.14	ENST00000319406.8:ENST00000379509.8:ENST00000491680.6:ENST00000309052.8:ENST00000478015.5:ENST00000476038.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	37	2	4.61889	4.706855	4.79482	0.0166646	0.00447781	0.102621	0.0610799
chr22	28728701	28728781	7573378	0	-	0.3375	(0.32,0.35]	chr22	774404	2	INTRON	INTRON	CHEK2	ENSG00000183765.23	ENST00000416671.5:ENST00000348295.7:ENST00000404276.6:ENST00000425190.7:ENST00000402731.6:ENST00000649563.1:ENST00000405598.5:ENST00000382580.6:ENST00000650281.1:ENST00000417588.5:ENST00000433728.5:ENST00000448511.5:ENST00000403642.5:ENST00000433028.6:ENST00000439200.5:ENST00000454252.1:ENST00000650233.1:ENST00000398017.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	37	2	4.61889	4.706855	4.79482	0.0166646	0.00447781	0.102621	0.0610799
chr17	66356837	66356937	6662840	0	+	0.49	(0.476,0.515]	chr17	650324	169	INTRON	INTRON	PRKCA	ENSG00000154229.12	ENST00000413366.8:ENST00000578063.5:ENST00000284384.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	75	2	3.40003	4.70626	6.01249	0.00139193	4.02459e-5	0.0341261	0.00539487
chr11	78395069	78395169	5000160	0	-	0.47	(0.44,0.476]	chr11	472472	306	INTRON	INTRON	GAB2	ENSG00000033327.13	ENST00000361507.5:ENST00000526030.1:ENST00000528886.5:ENST00000530915.1:ENST00000534823.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	73	2	3.79387	4.705685	5.6175	2.84938e-4	2.19099e-4	0.015495	0.0129737
chr17	1841304	1841404	6546091	0	+	0.53	(0.515,0.57]	chr17	634926	108	INTRON	INTRON	RPA1	ENSG00000132383.12	ENST00000571058.5:ENST00000570451.5:ENST00000254719.10	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.41498	4.705665	4.99635	0.0106866	8.06602e-4	0.0861859	0.0258804
chr19	1821018	1821118	7113549	0	-	0.53	(0.515,0.57]	chr19	714861	1	SS5_PROX	SS5_PROX:INTRON	REXO1	ENSG00000079313.15	ENST00000170168.9:ENST00000643515.1:ENST00000586343.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	34	2	4.41498	4.705665	4.99635	0.0106866	8.06602e-4	0.0861859	0.0258804
chr1	247322197	247322297	684362	0	-	0.47	(0.44,0.476]	chr1	80225	1	SS5_PROX	SS5_PROX:INTRON	ZNF496	ENSG00000162714.13	ENST00000294753.8:ENST00000682384.1:ENST00000461277.2	protein_coding	protein_coding	protein_coding	protein_coding	4	133	2	2.8917	4.705225	6.51875	1.22121e-4	3.02616e-6	0.00944529	0.00122849
chr12	64492383	64492483	5153833	0	+	0.55	(0.515,0.57]	chr12	488006	4	SS3_PROX	SS3_PROX:INTRON	TBK1	ENSG00000183735.11	ENST00000676684.1:ENST00000677499.1:ENST00000677641.1:ENST00000676654.1:ENST00000652537.1:ENST00000676809.1:ENST00000650790.1:ENST00000652657.1:ENST00000676912.1:ENST00000677686.1:ENST00000652389.1:ENST00000331710.10:ENST00000651262.1:ENST00000677632.1:ENST00000650997.1:ENST00000678180.1:ENST00000676930.1:ENST00000650762.1:ENST00000650786.1:ENST00000677831.1:ENST00000651014.1:ENST00000651878.1:ENST00000678197.1:ENST00000650708.1:ENST00000677435.1:ENST00000676587.1:ENST00000678567.1:ENST00000677714.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	34	2	4.50102	4.705069999999999	4.90912	0.00510768	0.0021669	0.0646039	0.0417866
chr16	48334458	48334558	6346659	0	+	0.56	(0.515,0.57]	chr16	609128	1	SS5_PROX	SS5_PROX:INTRON	LONP2	ENSG00000102910.14	ENST00000285737.9:ENST00000535754.5:ENST00000416006.7:ENST00000566755.5:ENST00000565867.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	34	2	4.50102	4.705069999999999	4.90912	0.00510768	0.0021669	0.0646039	0.0417866
chr19	2777839	2777926	7116706	0	-	0.54023	(0.515,0.57]	chr19	715509	5	EXON_LNCRNA	EXON_LNCRNA:INTRON	SGTA	ENSG00000104969.11	ENST00000221566.7:ENST00000678109.1:ENST00000676984.1:ENST00000677513.1:ENST00000676943.1:ENST00000677731.1:ENST00000679138.1:ENST00000677562.1:ENST00000678595.1:ENST00000677754.1:ENST00000677149.1:ENST00000678577.1:ENST00000589251.5:ENST00000586711.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	34	2	4.50102	4.705069999999999	4.90912	0.00510768	0.0021669	0.0646039	0.0417866
chr13	27094705	27094803	5565793	0	-	0.306122	(0.28,0.32]	chr13	532014	42	INTRON	INTRON	USP12	ENSG00000152484.14	ENST00000282344.11:ENST00000612674.1	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.50981	4.704715	4.89962	0.0275554	0.00425206	0.123904	0.0595557
chr3	100302337	100302437	1465995	0	+	0.29	(0.28,0.32]	chr3	153650	1	SS5_PROX	SS5_PROX:INTRON	TBC1D23	ENSG00000036054.13	ENST00000394144.9:ENST00000344949.9:ENST00000486274.5:ENST00000475134.1:ENST00000496167.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	38	2	4.50981	4.704715	4.89962	0.0275554	0.00425206	0.123904	0.0595557
chr1	474463	474563	355294	0	-	0.31	(0.28,0.32]	chr1	40950	942	INTRON	INTRON	ENSG00000237094	ENSG00000237094.12	ENST00000455207.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	38	2	4.6061	4.704325	4.80255	0.0137406	0.0102724	0.0949306	0.089002
chr5	146506202	146506283	2516118	0	+	0.308642	(0.28,0.32]	chr5	240406	2	INTRON	INTRON	TCERG1	ENSG00000113649.13	ENST00000296702.9:ENST00000679501.2:ENST00000394421.7:ENST00000549332.1:ENST00000506524.5:ENST00000514567.5:ENST00000514719.1:ENST00000503741.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	38	2	4.6061	4.704325	4.80255	0.0137406	0.0102724	0.0949306	0.089002
chr6	157655026	157655126	3014297	0	+	0.47	(0.44,0.476]	chr6	281317	10	INTRON	INTRON	ZDHHC14	ENSG00000175048.17	ENST00000414563.6:ENST00000359775.10:ENST00000518214.5:ENST00000341375.12:ENST00000523706.5:ENST00000517432.5:ENST00000422910.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	39	2	4.1054	4.70415	5.3029	0.0220205	0.00102616	0.123836	0.029231300000000002
chr19	19387435	19387534	7035162	0	+	0.515152	(0.476,0.515]	chr19	701429	9	INTRON	INTRON	GATAD2A	ENSG00000167491.18	ENST00000494516.6:ENST00000360315.7:ENST00000609040.5:ENST00000417582.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	73	2	3.78212	4.70367	5.62522	2.4907e-4	2.36145e-4	0.0145812	0.0136195
chr7	96168068	96168166	3574700	0	-	0.346939	(0.32,0.35]	chr7	333000	7	INTRON	INTRON	SLC25A13	ENSG00000004864.14	ENST00000265631.10:ENST00000416240.6:ENST00000490072.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	37	2	4.64046	4.7027350000000006	4.76501	0.0114287	0.00724767	0.0886611	0.0756327
chr17	59837930	59838021	6643712	0	+	0.417582	(0.408,0.44]	chr17	648782	1	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	VMP1	ENSG00000062716.13	ENST00000262291.9:ENST00000592619.5:ENST00000591877.1:ENST00000591782.1:ENST00000588617.1:ENST00000592790.1:ENST00000587470.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	23	1224	2	3.99259	4.702719999999999	5.41285	3.8514e-11	1.15419e-12	6.75454e-7	4.97648e-8
chr16	70149643	70149741	6383813	0	+	0.326531	(0.32,0.35]	chr16	613553	7	INTRON	INTRON	PDPR	ENSG00000090857.14	ENST00000288050.9:ENST00000568530.5:ENST00000398122.7:ENST00000565186.5:ENST00000562100.5:ENST00000569042.5:ENST00000567046.5:ENST00000563930.5:ENST00000564563.1:ENST00000567896.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	39	2	4.17181	4.70254	5.23327	0.04531	9.33826e-4	0.149888	0.0278746
chr18	9179785	9179885	6869361	0	+	0.34	(0.32,0.35]	chr18	680561	416	INTRON	INTRON	ANKRD12	ENSG00000101745.17	ENST00000585234.5:ENST00000262126.9:ENST00000577992.1:ENST00000540578.6:ENST00000581635.5:ENST00000400020.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	39	2	4.17181	4.70254	5.23327	0.04531	9.33826e-4	0.149888	0.0278746
chr4	25409791	25409891	1934305	0	+	0.35	(0.32,0.35]	chr4	194276	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ANAPC4	ENSG00000053900.11	ENST00000315368.8:ENST00000510092.5:ENST00000505842.5:ENST00000504256.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	39	2	4.17181	4.70254	5.23327	0.04531	9.33826e-4	0.149888	0.0278746
chr11	31456786	31456886	4938704	0	-	0.5	(0.476,0.515]	chr11	462564	4	SS3_PROX	SS3_PROX:INTRON	IMMP1L	ENSG00000148950.11	ENST00000532287.6:ENST00000534812.5:ENST00000526776.5:ENST00000278200.5:ENST00000648582.1:ENST00000533642.1:ENST00000527184.5:ENST00000528161.5:ENST00000532624.5:ENST00000529749.5:ENST00000530023.5:ENST00000531693.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	36	2	4.34648	4.702475	5.05847	0.0193566	0.00108081	0.108861	0.0300133
chr2	215323196	215323295	1014025	0	+	0.515152	(0.476,0.515]	chr2	107833	31	INTRON	INTRON	ATIC	ENSG00000138363.15	ENST00000444305.5:ENST00000488712.5:ENST00000236959.14:ENST00000443953.5:ENST00000435675.5:ENST00000427397.5:ENST00000413174.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	36	2	4.34648	4.702475	5.05847	0.0193566	0.00108081	0.108861	0.0300133
chr4	139150088	139150188	2247076	0	-	0.48	(0.476,0.515]	chr4	219601	102	INTRON	INTRON	ELF2	ENSG00000109381.21	ENST00000394235.6:ENST00000686138.1:ENST00000511184.5:ENST00000511006.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	36	2	4.34648	4.702475	5.05847	0.0193566	0.00108081	0.108861	0.0300133
chr11	13728029	13728111	4742921	0	+	0.353659	(0.35,0.378]	chr11	439222	4	SS5_PROX	SS5_PROX:INTRON	FAR1	ENSG00000197601.13	ENST00000354817.8:ENST00000532502.1	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.1971	4.702265	5.20743	0.0367539	7.78116e-4	0.138959	0.0256531
chr6	136288915	136289014	3231119	0	-	0.616162	(0.57,1]	chr6	300408	59	INTRON	INTRON	BCLAF1	ENSG00000029363.17	ENST00000640069.1:ENST00000531224.6:ENST00000353331.8:ENST00000527536.5:ENST00000527613.5:ENST00000530767.5:ENST00000527759.5:ENST00000534269.5:ENST00000532384.5:ENST00000530429.5:ENST00000628517.2:ENST00000529826.5:ENST00000528229.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	49	2	3.88806	4.70214	5.51622	6.56297e-5	1.33983e-5	0.0067007	0.00288846
chr11	62763718	62763814	4799071	0	+	0.479167	(0.476,0.515]	chr11	444678	3	INTRON	INTRON	POLR2G	ENSG00000168002.12	ENST00000533442.5:ENST00000301788.12:ENST00000525455.5:ENST00000524819.5:ENST00000531944.5:ENST00000527435.5:ENST00000531996.5:ENST00000526368.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	36	2	4.43093	4.7017299999999995	4.97253	0.00931369	0.00311573	0.0855292	0.0498063
chr12	121210994	121211093	5236692	0	+	0.484848	(0.476,0.515]	chr12	497063	3	INTRON	INTRON	P2RX4	ENSG00000135124.16	ENST00000359949.11:ENST00000543430.5:ENST00000337233.9:ENST00000543984.5:ENST00000499638.6:ENST00000543318.5:ENST00000540930.5:ENST00000538701.5:ENST00000542067.5:ENST00000541187.5:ENST00000538417.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	36	2	4.43093	4.7017299999999995	4.97253	0.00931369	0.00311573	0.0855292	0.0498063
chr22	19362930	19363030	7553723	0	-	0.51	(0.476,0.515]	chr22	772232	6	INTRON	INTRON	HIRA:C22orf39	ENSG00000100084.14:ENSG00000242259.9	ENST00000263208.5:ENST00000340170.8:ENST00000509549.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	36	2	4.43093	4.7017299999999995	4.97253	0.00931369	0.00311573	0.0855292	0.0498063
chr19	4109909	4110008	7119399	0	-	0.50505	(0.476,0.515]	chr19	716170	53	INTRON	INTRON	MAP2K2	ENSG00000126934.15	ENST00000262948.10:ENST00000394867.9:ENST00000687128.1:ENST00000599345.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	73	2	3.81894	4.701595	5.58425	2.97744e-4	1.96038e-4	0.0160246	0.0122528
chr3	197625317	197625414	1904017	0	-	0.340206	(0.32,0.35]	chr3	190769	2	INTRON	INTRON	SDHAP4	ENSG00000214135.9	ENST00000685600.1:ENST00000688268.1:ENST00000689716.1:ENST00000689038.1:ENST00000414207.5:ENST00000686003.1:ENST00000418868.6:ENST00000685331.1:ENST00000690701.1:ENST00000685536.1:ENST00000449003.6:ENST00000440535.5:ENST00000454517.1:ENST00000437008.5	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript:transcribed_unprocessed_pseudogene	2	107	2	3.08864	4.7014	6.31416	6.64579e-4	3.67371e-5	0.0233423	0.00515117
chr2	131065769	131065868	1228814	0	-	0.262626	[0,0.28]	chr2	130981	97	INTRON	INTRON	FAM168B	ENSG00000152102.18	ENST00000389915.4:ENST00000409185.5	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	4.62084	4.70113	4.78142	0.0313633	0.00943974	0.13151	0.0861183
chr21	37500927	37501027	7407583	0	+	0.27	[0,0.28]	chr21	754944	43	INTRON	INTRON	DYRK1A	ENSG00000157540.22	ENST00000646523.1:ENST00000647425.1:ENST00000647188.2:ENST00000647504.1:ENST00000644942.1:ENST00000338785.8:ENST00000643624.1:ENST00000398960.7:ENST00000646548.1:ENST00000645424.1:ENST00000643854.1:ENST00000642309.1:ENST00000645774.1:ENST00000398956.2:ENST00000643808.1:ENST00000644367.1:ENST00000646224.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	39	2	4.62084	4.70113	4.78142	0.0313633	0.00943974	0.13151	0.0861183
chr3	141879760	141879859	1526106	0	+	0.242424	[0,0.28]	chr3	159005	18	INTRON	INTRON	ATP1B3	ENSG00000069849.11	ENST00000475483.5:ENST00000465172.5:ENST00000286371.8:ENST00000466678.5:ENST00000462082.1:ENST00000495216.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	39	2	4.62084	4.70113	4.78142	0.0313633	0.00943974	0.13151	0.0861183
chr4	150887252	150887352	2270474	0	-	0.27	[0,0.28]	chr4	220841	141	INTRON	INTRON	LRBA	ENSG00000198589.14	ENST00000357115.9:ENST00000651943.2:ENST00000510413.5:ENST00000651035.1:ENST00000507224.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	39	2	4.62084	4.70113	4.78142	0.0313633	0.00943974	0.13151	0.0861183
chr7	92336257	92336356	3353703	0	+	0.252525	[0,0.28]	chr7	312518	80	INTRON	INTRON	ANKIB1	ENSG00000001629.10	ENST00000265742.8:ENST00000439883.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	39	2	4.62084	4.70113	4.78142	0.0313633	0.00943974	0.13151	0.0861183
chr8	28121236	28121335	3722512	0	+	0.141414	[0,0.28]	chr8	346068	18	INTRON	INTRON	ELP3	ENSG00000134014.17	ENST00000521015.5:ENST00000380353.8:ENST00000537665.2:ENST00000523687.5:ENST00000524103.5:ENST00000256398.13:ENST00000518112.5:ENST00000519261.5:ENST00000520110.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	39	2	4.62084	4.70113	4.78142	0.0313633	0.00943974	0.13151	0.0861183
chr1	145656943	145657042	210487	0	+	0.272727	[0,0.28]	chr1	22991	93	INTRON	INTRON	GPR89A	ENSG00000117262.19	ENST00000313835.14:ENST00000460277.5:ENST00000534502.5:ENST00000462900.2:ENST00000478703.5:ENST00000493684.5:ENST00000465185.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	39	2	4.69191	4.70104	4.71017	0.0269474	0.0114708	0.123442	0.0956037
chr1	201864783	201864879	292127	0	+	0.177083	[0,0.28]	chr1	33597	8	INTRON	INTRON	IPO9	ENSG00000198700.10	ENST00000361565.9	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	4.69191	4.70104	4.71017	0.0269474	0.0114708	0.123442	0.0956037
chr17	60291282	60291382	6804861	0	-	0.28	[0,0.28]	chr17	672342	22	INTRON	INTRON	USP32	ENSG00000170832.13	ENST00000300896.9:ENST00000590133.5:ENST00000589335.5:ENST00000393003.7	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	4.69191	4.70104	4.71017	0.0269474	0.0114708	0.123442	0.0956037
chr19	46381115	46381214	7081661	0	+	0.252525	[0,0.28]	chr19	708540	42	INTRON	INTRON	PPP5C	ENSG00000011485.15	ENST00000012443.9:ENST00000478046.5:ENST00000391919.1:ENST00000527193.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	39	2	4.69191	4.70104	4.71017	0.0269474	0.0114708	0.123442	0.0956037
chr20	49689186	49689286	7353381	0	-	0.27	[0,0.28]	chr20	749846	321	INTRON	INTRON	B4GALT5	ENSG00000158470.5	ENST00000371711.4	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	4.69191	4.70104	4.71017	0.0269474	0.0114708	0.123442	0.0956037
chr3	23850081	23850181	1388171	0	+	0.21	[0,0.28]	chr3	145385	382	INTRON	INTRON	UBE2E1	ENSG00000170142.12	ENST00000306627.8:ENST00000346855.7:ENST00000495141.5:ENST00000442670.5:ENST00000424381.5:ENST00000467766.5:ENST00000475680.5:ENST00000452012.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	39	2	4.69191	4.70104	4.71017	0.0269474	0.0114708	0.123442	0.0956037
chr10	67885399	67885499	4440406	0	+	0.36	(0.35,0.378]	chr10	409420	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	SIRT1	ENSG00000096717.12	ENST00000212015.11:ENST00000432464.5:ENST00000497639.5:ENST00000473922.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	38	2	4.29961	4.700935	5.10226	0.0158483	0.00327038	0.109464	0.0508595
chr17	75167256	75167354	6836221	0	-	0.367347	(0.35,0.378]	chr17	675497	18	UTR3	UTR3:EXON_MRNA:INTRON	JPT1:SUMO2	ENSG00000189159.16:ENSG00000188612.12	ENST00000580380.1:ENST00000584079.5:ENST00000420826.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	38	2	4.29961	4.700935	5.10226	0.0158483	0.00327038	0.109464	0.0508595
chr7	128587564	128587664	3407924	0	+	0.46	(0.44,0.476]	chr7	318358	71	INTRON	INTRON	ENSG00000280828:ENSG00000242588	ENSG00000280828.1:ENSG00000242588.6	ENST00000479267.2:ENST00000605862.5	lncRNA	lncRNA	lncRNA:unprocessed_pseudogene	lncRNA:unprocessed_pseudogene	0	36	2	4.33899	4.700934999999999	5.06288	0.0206616	0.00102416	0.110999	0.0294041
chr12	119854543	119854642	5432045	0	-	0.464646	(0.44,0.476]	chr12	519004	39	INTRON	INTRON	CIT	ENSG00000122966.17	ENST00000392521.7:ENST00000261833.11:ENST00000612548.4:ENST00000536325.1	protein_coding	protein_coding	protein_coding	protein_coding	1	79	2	3.26669	4.7007900000000005	6.13489	0.00305435	4.97756e-6	0.0493883	0.00151644
chr1	19123360	19123460	385872	0	-	0.49	(0.476,0.515]	chr1	45798	3	SS3_PROX	SS3_PROX:INTRON	UBR4	ENSG00000127481.15	ENST00000375254.8:ENST00000425413.5:ENST00000417040.1	protein_coding	protein_coding	protein_coding	protein_coding	2	97	2	3.27004	4.700514999999999	6.13099	2.20887e-4	2.19436e-5	0.0130309	0.00381314
chrX	107075699	107075799	7859211	0	-	0.36	(0.35,0.378]	chrX	801229	49	INTRON	INTRON	RBM41	ENSG00000089682.17	ENST00000685964.1:ENST00000372487.5:ENST00000495517.5:ENST00000372479.7:ENST00000434854.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	39	2	4.19022	4.700200000000001	5.21018	0.0209891	0.00228003	0.122348	0.0426265
chrX	155577153	155577253	7918139	0	-	0.36	(0.35,0.378]	chrX	806317	315	INTRON	INTRON	TMLHE	ENSG00000185973.12	ENST00000334398.8:ENST00000675642.1:ENST00000369439.4	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	4.19022	4.700200000000001	5.21018	0.0209891	0.00228003	0.122348	0.0426265
chr18	77981523	77981622	6990170	0	-	0.454545	(0.44,0.476]	chr18	691894	15	INTRON	INTRON	LINC01029	ENSG00000265843.3	ENST00000657337.1:ENST00000669341.1:ENST00000671271.1:ENST00000668585.1:ENST00000666771.1:ENST00000667842.1:ENST00000661306.1:ENST00000662598.1:ENST00000662109.1:ENST00000662085.1:ENST00000583106.1:ENST00000582805.1:ENST00000656930.1	lncRNA	lncRNA	lncRNA	lncRNA	0	36	2	4.43525	4.70008	4.96491	0.00897296	0.0034249	0.0849778	0.0517761
chr6	15026459	15026558	3063197	0	-	0.464646	(0.44,0.476]	chr6	284657	46	INTRON	INTRON	ENSG00000234261	ENSG00000234261.5	ENST00000653525.1:ENST00000656468.1:ENST00000656344.1:ENST00000437648.1	lncRNA	lncRNA	lncRNA	lncRNA	0	36	2	4.43525	4.70008	4.96491	0.00897296	0.0034249	0.0849778	0.0517761
chr1	32663834	32663934	65958	0	+	0.36	(0.35,0.378]	chr1	8429	11	INTRON	INTRON	RBBP4	ENSG00000162521.19	ENST00000414241.7:ENST00000527118.5:ENST00000373493.10:ENST00000401893.7:ENST00000524393.5:ENST00000492348.6:ENST00000526193.5:ENST00000373485.5:ENST00000477563.6:ENST00000458695.6:ENST00000445722.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	77	2	3.90724	4.69991	5.49258	8.19894e-4	1.41179e-4	0.0264086	0.0102551
chr1	154226781	154226881	227587	0	+	0.36	(0.35,0.378]	chr1	26238	1	SS3_PROX	SS3_PROX:INTRON	UBAP2L	ENSG00000143569.19	ENST00000343815.10:ENST00000271877.11:ENST00000613315.4:ENST00000441890.5:ENST00000412596.5:ENST00000368504.5:ENST00000428931.6:ENST00000437652.5:ENST00000456325.5:ENST00000361546.6	protein_coding	protein_coding	protein_coding	protein_coding	1	85	2	3.12905	4.69988	6.27071	0.00566312	3.86129e-6	0.0653997	0.00129961
chr1	473463	473563	355284	0	-	0.26	[0,0.28]	chr1	40950	932	INTRON	INTRON	ENSG00000237094	ENSG00000237094.12	ENST00000455207.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	41	2	4.28915	4.69974	5.11033	0.0319595	0.00991388	0.14477	0.0838372
chr15	30668682	30668781	5992708	0	+	0.222222	[0,0.28]	chr15	569767	95	INTRON	INTRON	ENSG00000284906:ENSG00000285035:ENSG00000187951	ENSG00000284906.3:ENSG00000285035.2:ENSG00000187951.11	ENST00000685924.1:ENST00000563110.6:ENST00000566548.5:ENST00000602616.6:ENST00000562954.1	protein_coding	protein_coding	protein_coding:lncRNA:transcribed_unprocessed_pseudogene	protein_coding:nonsense_mediated_decay:lncRNA:processed_transcript	0	41	2	4.28915	4.69974	5.11033	0.0319595	0.00991388	0.14477	0.0838372
chr16	81000451	81000549	6530633	0	-	0.387755	(0.378,0.408]	chr16	632671	16	INTRON	INTRON	CMC2	ENSG00000103121.9	ENST00000219400.8:ENST00000486645.5:ENST00000570195.5:ENST00000569187.5:ENST00000570086.5:ENST00000565650.5:ENST00000567593.5:ENST00000568228.5:ENST00000565914.5:ENST00000565108.5:ENST00000565925.5:ENST00000564174.5:ENST00000565613.5:ENST00000562713.3:ENST00000562828.5:ENST00000630396.1:ENST00000565514.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	80	2	3.57821	4.69959	5.82097	9.60401e-4	3.45471e-5	0.0282401	0.00467863
chr17	61788910	61789010	6808181	0	-	0.49	(0.476,0.515]	chr17	672569	41	INTRON	INTRON	BRIP1	ENSG00000136492.10	ENST00000259008.7:ENST00000682755.1:ENST00000682453.1:ENST00000683039.1:ENST00000682989.1:ENST00000682589.1:ENST00000683235.1:ENST00000682477.1:ENST00000684584.1:ENST00000577598.5:ENST00000682066.1:ENST00000584322.2:ENST00000683381.1:ENST00000579028.2:ENST00000682611.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	77	2	3.5704	4.69951	5.82862	8.75056e-4	3.00692e-5	0.0270926	0.00436729
chr8	47730062	47730160	3751952	0	+	0.367347	(0.35,0.378]	chr8	348925	2	INTRON	INTRON	SPIDR	ENSG00000164808.17	ENST00000541342.2:ENST00000518074.5:ENST00000297423.9:ENST00000524126.5:ENST00000522117.5:ENST00000521214.5:ENST00000519401.5:ENST00000519141.5:ENST00000517693.5:ENST00000519362.5:ENST00000517619.5:ENST00000518060.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	85	2	3.84382	4.69941	5.555	3.33157e-4	1.71389e-4	0.016912	0.0113605
chr21	22222911	22223011	7384597	0	+	0.24	[0,0.28]	chr21	752727	97	INTRON	INTRON	ENSG00000226043	ENSG00000226043.2	ENST00000667099.1:ENST00000654607.1:ENST00000444130.1	lncRNA	lncRNA	lncRNA	lncRNA	0	42	2	4.1879	4.69922	5.21054	0.0396579	0.00758653	0.161534	0.0749063
chr9	131421705	131421805	4217246	0	+	0.46	(0.44,0.476]	chr9	386720	271	INTRON	INTRON	PRRC2B	ENSG00000288701.1	ENST00000682525.1:ENST00000684596.1:ENST00000683519.1:ENST00000682501.1	protein_coding	protein_coding	protein_coding	protein_coding	1	75	2	3.36231	4.6988	6.03529	0.00161678	4.06961e-5	0.0369204	0.00539487
chr1	40162334	40162434	79972	0	+	0.39	(0.378,0.408]	chr1	10405	3	INTRON	INTRON	RLF	ENSG00000117000.9	ENST00000372771.5	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.41169	4.69878	4.98587	0.0199606	0.00152268	0.109608	0.0360297
chr14	95540176	95540276	5808541	0	+	0.4	(0.378,0.408]	chr14	550660	44	INTRON	INTRON	GLRX5	ENSG00000182512.5	ENST00000553672.1:ENST00000331334.5:ENST00000557731.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	36	2	4.41169	4.69878	4.98587	0.0199606	0.00152268	0.109608	0.0360297
chr16	85007399	85007499	6534131	0	-	0.38	(0.378,0.408]	chr16	633155	25	INTRON	INTRON	ZDHHC7	ENSG00000153786.13	ENST00000313732.9:ENST00000344861.9:ENST00000564466.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	36	2	4.41169	4.69878	4.98587	0.0199606	0.00152268	0.109608	0.0360297
chr17	44037738	44037838	6778102	0	-	0.39	(0.378,0.408]	chr17	668115	2	SS3_PROX	SS3_PROX:INTRON	LSM12	ENSG00000161654.10	ENST00000591247.6:ENST00000293406.8:ENST00000590563.1:ENST00000585388.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	36	2	4.41169	4.69878	4.98587	0.0199606	0.00152268	0.109608	0.0360297
chr2	61387109	61387209	1129710	0	-	0.38	(0.378,0.408]	chr2	121474	34	INTRON	INTRON	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000453133.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	36	2	4.41169	4.69878	4.98587	0.0199606	0.00152268	0.109608	0.0360297
chr6	107896165	107896263	3182209	0	-	0.510204	(0.476,0.515]	chr6	296388	19	INTRON	INTRON	SEC63	ENSG00000025796.14	ENST00000369002.9:ENST00000466419.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	73	2	3.58243	4.698315	5.8142	6.18479e-4	1.0551e-4	0.0223951	0.00920724
chr16	1757051	1757150	6275982	0	+	0.383838	(0.378,0.408]	chr16	599594	42	INTRON	INTRON	MAPK8IP3	ENSG00000138834.15	ENST00000250894.8:ENST00000673691.1:ENST00000356010.9:ENST00000610761.2:ENST00000567849.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	74	2	3.76175	4.69819	5.63463	3.59226e-4	2.68579e-4	0.0175484	0.0145349
chr1	96729978	96730078	168023	0	+	0.46	(0.44,0.476]	chr1	18215	60	INTRON	INTRON	PTBP2	ENSG00000117569.19	ENST00000482253.5:ENST00000675735.1:ENST00000609116.5:ENST00000674951.1:ENST00000675080.1:ENST00000426398.3:ENST00000460706.5:ENST00000370197.5:ENST00000370198.5:ENST00000476419.5:ENST00000676292.1:ENST00000676096.1:ENST00000675365.1:ENST00000674579.1:ENST00000675401.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	104	2	3.14512	4.69812	6.25112	5.78837e-4	2.45362e-6	0.0223209	9.94123e-4
chr1	36316175	36316275	73872	0	+	0.38	(0.378,0.408]	chr1	9484	62	INTRON	INTRON	SH3D21	ENSG00000214193.11	ENST00000453908.8:ENST00000505871.7:ENST00000480549.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	36	2	4.51854	4.69808	4.87762	0.00748824	0.00553849	0.0772645	0.0648867
chr7	23321944	23322044	3502162	0	-	0.4	(0.378,0.408]	chr7	326829	23	INTRON	INTRON	IGF2BP3	ENSG00000136231.14	ENST00000258729.8:ENST00000619562.4:ENST00000421467.6:ENST00000467592.5:ENST00000497563.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	36	2	4.51854	4.69808	4.87762	0.00748824	0.00553849	0.0772645	0.0648867
chr21	46479967	46480067	7422711	0	+	0.41	(0.408,0.44]	chr21	756967	204	INTRON	INTRON	DIP2A	ENSG00000160305.18	ENST00000417564.3:ENST00000651436.1:ENST00000400274.5:ENST00000457905.7:ENST00000466639.5:ENST00000435722.7	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.33238	4.697905	5.06343	0.0218901	0.00101725	0.11491	0.0293497
chr6	13692688	13692788	3059034	0	-	0.46	(0.44,0.476]	chr6	284542	335	INTRON	INTRON	RANBP9	ENSG00000010017.13	ENST00000011619.6	protein_coding	protein_coding	protein_coding	protein_coding	2	97	2	3.45381	4.69772	5.94163	7.90762e-5	6.45088e-5	0.00739361	0.00711194
chr1	28044628	28044727	408565	0	-	0.212121	[0,0.28]	chr1	49209	16	INTRON	INTRON	EYA3	ENSG00000158161.16	ENST00000373871.8:ENST00000540618.5:ENST00000436342.6:ENST00000373864.5:ENST00000373863.3:ENST00000471498.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	39	2	4.5461	4.697705	4.84931	0.0365918	0.00779241	0.138959	0.0787356
chr10	130176968	130177067	4536744	0	+	0.262626	[0,0.28]	chr10	418830	15	INTRON	INTRON	GLRX3	ENSG00000108010.12	ENST00000331244.10:ENST00000481034.1:ENST00000368644.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	39	2	4.5461	4.697705	4.84931	0.0365918	0.00779241	0.138959	0.0787356
chr21	46392069	46392166	7421919	0	+	0.268041	[0,0.28]	chr21	756818	3	INTRON	INTRON	PCNT	ENSG00000160299.18	ENST00000695558.1:ENST00000359568.10:ENST00000480896.5	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	4.5461	4.697705	4.84931	0.0365918	0.00779241	0.138959	0.0787356
chr4	25776954	25777048	2119751	0	-	0.180851	[0,0.28]	chr4	209380	2	INTRON	INTRON	SEL1L3	ENSG00000091490.11	ENST00000264868.9:ENST00000399878.8:ENST00000502949.5	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	4.5461	4.697705	4.84931	0.0365918	0.00779241	0.138959	0.0787356
chr6	44130349	44130448	2872358	0	+	0.232323	[0,0.28]	chr6	272384	21	INTRON	INTRON	TMEM63B	ENSG00000137216.19	ENST00000259746.13:ENST00000323267.11:ENST00000532634.5:ENST00000534326.5:ENST00000525294.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	39	2	4.5461	4.697705	4.84931	0.0365918	0.00779241	0.138959	0.0787356
chr5	141566558	141566657	2739635	0	-	0.515152	(0.476,0.515]	chr5	258073	60	INTRON	INTRON	DIAPH1	ENSG00000131504.18	ENST00000647433.1:ENST00000389054.8:ENST00000518047.5	protein_coding	protein_coding	protein_coding	protein_coding	2	97	2	3.4139	4.69759	5.98128	1.00747e-4	4.70386e-5	0.00847812	0.00593131
chr1	243220426	243220526	668367	0	-	0.26	[0,0.28]	chr1	79311	81	INTRON	INTRON	CEP170	ENSG00000143702.16	ENST00000366544.5:ENST00000366543.5:ENST00000366542.6:ENST00000522191.5:ENST00000523424.5:ENST00000522522.5:ENST00000522995.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	39	2	4.63523	4.6974350000000005	4.75964	0.0232081	0.0139836	0.118148	0.10247
chr12	69591460	69591558	5165441	0	+	0.326531	(0.32,0.35]	chr12	489244	14	INTRON	INTRON	CCT2	ENSG00000166226.13	ENST00000299300.11:ENST00000544368.6:ENST00000550010.5:ENST00000543146.2:ENST00000548787.1:ENST00000546850.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	38	2	4.273	4.696994999999999	5.12099	0.0368357	0.00143632	0.138959	0.0347139
chr2	86481429	86481529	823352	0	+	0.34	(0.32,0.35]	chr2	91985	1	SS3_PROX	SS3_PROX:INTRON	KDM3A	ENSG00000115548.17	ENST00000409556.5:ENST00000312912.10:ENST00000441719.5:ENST00000409064.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	38	2	4.273	4.696994999999999	5.12099	0.0368357	0.00143632	0.138959	0.0347139
chr8	8235423	8235521	3906236	0	-	0.346939	(0.32,0.35]	chr8	357950	12	EXON_LNCRNA	EXON_LNCRNA	ALG1L13P	ENSG00000253981.6	ENST00000689104.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	38	2	4.273	4.696994999999999	5.12099	0.0368357	0.00143632	0.138959	0.0347139
chr1	8408637	8408737	369667	0	-	0.41	(0.408,0.44]	chr1	43438	423	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000377464.5:ENST00000400907.6:ENST00000476556.5:ENST00000656437.1:ENST00000488215.5:ENST00000460659.5:ENST00000492766.5:ENST00000465125.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	36	2	4.4358	4.696985	4.95817	0.00893097	0.00372419	0.0849778	0.0535094
chr11	108055853	108055952	4856205	0	+	0.545455	(0.515,0.57]	chr11	452903	5	INTRON	INTRON	CUL5	ENSG00000166266.14	ENST00000393094.7:ENST00000531427.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	35	2	4.28921	4.696845	5.10448	0.00990051	0.0010345	0.0877296	0.029231300000000002
chr1	21758382	21758482	396622	0	-	0.33	(0.32,0.35]	chr1	47345	2	INTRON	INTRON	USP48	ENSG00000090686.16	ENST00000400301.5:ENST00000308271.14:ENST00000529637.5:ENST00000421625.6:ENST00000527823.5:ENST00000532737.1:ENST00000489108.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	95	2	2.79707	4.69674	6.59641	0.0170923	9.23642e-7	0.104099	5.4515e-4
chr1	47283503	47283598	445795	0	-	0.442105	(0.44,0.476]	chr1	54020	12	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	STIL	ENSG00000123473.17	ENST00000360380.7:ENST00000371877.8:ENST00000337817.10:ENST00000683977.1:ENST00000682977.1:ENST00000396221.6:ENST00000447475.7:ENST00000418131.1:ENST00000436811.2:ENST00000682165.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	78	2	3.35227	4.6967	6.04113	0.0022005699999999998	8.64562e-6	0.0417893	0.00211124
chr2	229819311	229819411	1340625	0	-	0.49	(0.476,0.515]	chr2	140409	4	INTRON	INTRON	TRIP12	ENSG00000153827.14	ENST00000675453.1:ENST00000675903.1:ENST00000283943.9:ENST00000675423.1:ENST00000389044.8:ENST00000389045.7:ENST00000479037.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	77	2	3.64127	4.69665	5.75203	6.42302e-4	4.51048e-5	0.0231685	0.0054649
chr10	96526313	96526413	4673811	0	-	0.37	(0.35,0.378]	chr10	430652	36	INTRON	INTRON	TM9SF3	ENSG00000077147.16	ENST00000371142.9:ENST00000649367.1:ENST00000485093.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	36	2	4.64457	4.696585	4.7486	0.012652	0.00418965	0.0926667	0.0591344
chr8	129534755	129534855	4060630	0	-	0.37	(0.35,0.378]	chr8	369648	242	INTRON	INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1:ENST00000676273.1:ENST00000667643.1:ENST00000668791.1:ENST00000663716.1:ENST00000663572.1:ENST00000676148.1:ENST00000667962.1:ENST00000674877.1:ENST00000675316.1:ENST00000674656.1:ENST00000446592.7:ENST00000667341.1:ENST00000675186.1:ENST00000652971.1:ENST00000661447.1:ENST00000674863.1:ENST00000675498.1:ENST00000675527.1:ENST00000676108.1:ENST00000657647.1:ENST00000675589.1:ENST00000675913.1:ENST00000675109.1:ENST00000671632.1:ENST00000671311.1:ENST00000676099.1:ENST00000660652.1:ENST00000675522.1:ENST00000675183.1:ENST00000658861.1:ENST00000663991.1:ENST00000675044.1:ENST00000675435.1:ENST00000674639.1:ENST00000676069.1:ENST00000675532.1:ENST00000674762.1:ENST00000523151.6:ENST00000675948.1:ENST00000665364.1:ENST00000657251.1:ENST00000675166.1:ENST00000674883.1:ENST00000675867.1:ENST00000674580.1:ENST00000675393.1:ENST00000520048.1:ENST00000674906.1:ENST00000676030.1:ENST00000670588.1:ENST00000675072.1:ENST00000664936.1:ENST00000652914.1:ENST00000657069.1	lncRNA	lncRNA	lncRNA	lncRNA	0	36	2	4.64457	4.696585	4.7486	0.012652	0.00418965	0.0926667	0.0591344
chr5	39011086	39011185	2605014	0	-	0.555556	(0.515,0.57]	chr5	247890	71	INTRON	INTRON	RICTOR	ENSG00000164327.13	ENST00000357387.8:ENST00000511516.5:ENST00000296782.9:ENST00000510711.5:ENST00000513566.1:ENST00000514735.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	67	2	3.96282	4.696505	5.43019	2.60422e-4	7.05073e-5	0.0148796	0.00694412
chr11	66286640	66286740	4968087	0	-	0.49	(0.476,0.515]	chr11	468407	3	SS5_PROX	SS5_PROX:INTRON	YIF1A	ENSG00000174851.16	ENST00000359461.10:ENST00000376901.9:ENST00000471387.6:ENST00000484814.1:ENST00000431556.6:ENST00000528575.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	35	2	4.61402	4.696289999999999	4.77856	0.00947755	0.00305743	0.0817766	0.0509893
chr11	95841909	95842009	5019831	0	-	0.51	(0.476,0.515]	chr11	473665	2	SS3_PROX	SS3_PROX:INTRON	MTMR2	ENSG00000087053.20	ENST00000675896.1:ENST00000346299.10:ENST00000675495.1:ENST00000676272.1:ENST00000675910.1:ENST00000393223.8:ENST00000676177.1:ENST00000675022.1:ENST00000675362.1:ENST00000674974.1:ENST00000675320.1:ENST00000675174.1:ENST00000674950.1:ENST00000674989.1:ENST00000675030.1:ENST00000676388.1:ENST00000675848.1:ENST00000675652.1:ENST00000676146.1:ENST00000675922.1:ENST00000676268.1:ENST00000675024.1:ENST00000675767.1:ENST00000676432.1:ENST00000676027.1:ENST00000675196.1:ENST00000675957.1:ENST00000675981.1:ENST00000674924.1:ENST00000676166.1:ENST00000676440.1:ENST00000675454.1:ENST00000674968.1:ENST00000676378.1:ENST00000675288.1:ENST00000675636.1:ENST00000675237.1:ENST00000674528.1:ENST00000675477.1:ENST00000674901.1:ENST00000675034.1:ENST00000676393.1:ENST00000675413.1:ENST00000675933.1:ENST00000675660.1:ENST00000674610.1:ENST00000409459.5:ENST00000352297.11:ENST00000675807.1:ENST00000675438.1:ENST00000675489.1:ENST00000676261.1:ENST00000481642.6:ENST00000495134.6:ENST00000484818.6:ENST00000470293.6:ENST00000497683.6:ENST00000444541.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	35	2	4.61402	4.696289999999999	4.77856	0.00947755	0.00305743	0.0817766	0.0509893
chr16	75456377	75456476	6529445	0	-	0.515152	(0.476,0.515]	chr16	632385	33	INTRON	INTRON	TMEM170A	ENSG00000166822.13	ENST00000357613.8:ENST00000561878.2:ENST00000568559.1:ENST00000569540.5:ENST00000567796.1:ENST00000566980.1:ENST00000569276.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	35	2	4.61402	4.696289999999999	4.77856	0.00947755	0.00305743	0.0817766	0.0509893
chr17	75853506	75853599	6838822	0	-	0.483871	(0.476,0.515]	chr17	676068	3	INTRON	INTRON	WBP2	ENSG00000132471.12	ENST00000626827.2:ENST00000254806.8:ENST00000585462.5:ENST00000591399.5:ENST00000591831.5:ENST00000590221.5:ENST00000588373.5:ENST00000433525.6:ENST00000416574.6:ENST00000589642.5:ENST00000587374.5:ENST00000593002.1:ENST00000589241.5:ENST00000590450.5:ENST00000589834.1:ENST00000592802.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	35	2	4.61402	4.696289999999999	4.77856	0.00947755	0.00305743	0.0817766	0.0509893
chr2	167928917	167929017	1259092	0	-	0.5	(0.476,0.515]	chr2	133340	278	INTRON	INTRON	B3GALT1-AS1	ENSG00000235335.3	ENST00000430546.2:ENST00000657553.1:ENST00000670221.1:ENST00000436982.2	lncRNA	lncRNA	lncRNA	lncRNA	0	35	2	4.61402	4.696289999999999	4.77856	0.00947755	0.00305743	0.0817766	0.0509893
chr3	4408665	4408765	1607856	0	-	0.48	(0.476,0.515]	chr3	166067	319	INTRON	INTRON	SUMF1	ENSG00000144455.14	ENST00000448413.5:ENST00000272902.10:ENST00000383843.9:ENST00000458465.6:ENST00000405420.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	35	2	4.6932	4.69619	4.69918	0.00753088	0.00400966	0.074841	0.057767
chr9	35071456	35071556	4247483	0	-	0.48	(0.476,0.515]	chr9	390815	3	SS5_PROX	SS5_PROX:INTRON	VCP	ENSG00000165280.18	ENST00000679902.1:ENST00000678465.1:ENST00000677257.1:ENST00000679800.1:ENST00000678018.1:ENST00000678650.1:ENST00000448530.6:ENST00000358901.11:ENST00000679647.1:ENST00000681335.1:ENST00000417448.2:ENST00000680916.1:ENST00000679599.1:ENST00000679862.1:ENST00000681690.1:ENST00000679204.2:ENST00000676836.2:ENST00000493886.5:ENST00000480327.2:ENST00000680079.1:ENST00000681386.1:ENST00000679392.1:ENST00000680575.1:ENST00000680108.1:ENST00000679901.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	35	2	4.6932	4.69619	4.69918	0.00753088	0.00400966	0.074841	0.057767
chr9	136919833	136919933	4222530	0	+	0.49	(0.476,0.515]	chr9	387840	2	SS3_PROX	SS3_PROX:INTRON	TRAF2	ENSG00000127191.18	ENST00000247668.7:ENST00000482854.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	35	2	4.6932	4.69619	4.69918	0.00753088	0.00400966	0.074841	0.057767
chr4	110094032	110094132	2226687	0	-	0.53	(0.515,0.57]	chr4	218018	5	INTRON	INTRON	ELOVL6	ENSG00000170522.10	ENST00000394607.7:ENST00000302274.8:ENST00000514184.5:ENST00000506625.5:ENST00000506461.1:ENST00000503885.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	88	2	3.40472	4.69613	5.98754	8.47527e-5	1.57707e-5	0.0077763	0.00318411
chr18	21783170	21783270	6880161	0	+	0.35	(0.32,0.35]	chr18	681898	31	INTRON	INTRON	MIB1	ENSG00000101752.13	ENST00000578646.5:ENST00000261537.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	38	2	4.37269	4.695930000000001	5.01917	0.0154102	0.0055659	0.108569	0.0648867
chr2	53933353	53933447	1120191	0	-	0.404255	(0.378,0.408]	chr2	120056	2	INTRON	INTRON	PSME4	ENSG00000068878.15	ENST00000404125.6:ENST00000389993.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	38	2	4.10661	4.69591	5.28521	0.0399023	4.52877e-4	0.143072	0.0192381
chr2	183019868	183019968	1285844	0	-	0.4	(0.378,0.408]	chr2	135424	162	INTRON	INTRON	NCKAP1	ENSG00000061676.15	ENST00000361354.9:ENST00000360982.2	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.10661	4.69591	5.28521	0.0399023	4.52877e-4	0.143072	0.0192381
chr9	15484717	15484815	4235813	0	-	0.408163	(0.378,0.408]	chr9	389300	47	INTRON	INTRON	PSIP1	ENSG00000164985.15	ENST00000380738.8:ENST00000380733.9:ENST00000380716.8:ENST00000380715.5:ENST00000397519.6	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.10661	4.69591	5.28521	0.0399023	4.52877e-4	0.143072	0.0192381
chr17	77193200	77193300	6679165	0	+	0.3	(0.28,0.32]	chr17	652374	4	SS3_PROX	SS3_PROX:INTRON	SEC14L1	ENSG00000129657.16	ENST00000392476.6:ENST00000589827.5:ENST00000430767.8:ENST00000585618.5:ENST00000436233.9:ENST00000443798.8:ENST00000591786.5:ENST00000591437.5:ENST00000588616.6:ENST00000431431.6:ENST00000590483.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	38	2	4.4263	4.69542	4.96454	0.0330296	0.00344078	0.133816	0.0539802
chr2	172586688	172586788	920214	0	+	0.31	(0.28,0.32]	chr2	101379	3	SS5_PROX	SS5_PROX:INTRON	PDK1	ENSG00000152256.14	ENST00000392571.6:ENST00000410055.5:ENST00000282077.8:ENST00000466437.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	38	2	4.4263	4.69542	4.96454	0.0330296	0.00344078	0.133816	0.0539802
chr1	120280933	120281033	202943	0	+	0.33	(0.32,0.35]	chr1	22366	25	INTRON	INTRON	ENSG00000274642	ENSG00000274642.1	ENST00000612320.1	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	0	37	2	4.45629	4.69527	4.93425	0.0246089	0.00281048	0.12011	0.0488779
chr10	96881403	96881503	4503457	0	+	0.35	(0.32,0.35]	chr10	414536	226	INTRON	INTRON	LCOR	ENSG00000196233.14	ENST00000676067.1:ENST00000676257.1:ENST00000676187.1:ENST00000675151.1:ENST00000675687.1:ENST00000675251.1:ENST00000676123.1:ENST00000371103.8:ENST00000675471.1:ENST00000421806.4:ENST00000675902.1:ENST00000540664.6:ENST00000676414.1:ENST00000675537.1:ENST00000675117.1:ENST00000675125.1:ENST00000356016.7:ENST00000371097.8:ENST00000676381.1:ENST00000674796.1:ENST00000674725.1:ENST00000675971.1:ENST00000676373.1:ENST00000676314.1:ENST00000675915.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	37	2	4.45629	4.69527	4.93425	0.0246089	0.00281048	0.12011	0.0488779
chr14	96803766	96803866	5810918	0	+	0.33	(0.32,0.35]	chr14	551001	36	INTRON	INTRON	VRK1	ENSG00000100749.9	ENST00000553683.2:ENST00000680538.1:ENST00000555351.2:ENST00000681195.1:ENST00000681524.1:ENST00000680084.1:ENST00000679533.1:ENST00000681598.1:ENST00000679727.1:ENST00000679758.1:ENST00000680509.1:ENST00000557222.6:ENST00000679977.1:ENST00000680387.1:ENST00000680335.1:ENST00000680683.1:ENST00000681474.1:ENST00000216639.8:ENST00000681363.1:ENST00000681538.1:ENST00000679736.1:ENST00000681176.1:ENST00000680922.1:ENST00000679903.1:ENST00000557352.2:ENST00000681101.1:ENST00000681419.1:ENST00000680348.1:ENST00000679941.1:ENST00000679452.1:ENST00000680849.1:ENST00000679770.1:ENST00000681493.1:ENST00000681778.1:ENST00000680993.1:ENST00000681355.1:ENST00000681695.1:ENST00000681344.1:ENST00000680007.1:ENST00000679918.1:ENST00000681785.1:ENST00000679816.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	37	2	4.45629	4.69527	4.93425	0.0246089	0.00281048	0.12011	0.0488779
chr7	92070726	92070813	3352353	0	+	0.344828	(0.32,0.35]	chr7	312354	7	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	AKAP9	ENSG00000127914.19	ENST00000680534.1:ENST00000680513.1:ENST00000680072.1:ENST00000679821.1:ENST00000679554.1:ENST00000356239.8:ENST00000679521.1:ENST00000680181.1:ENST00000681722.1:ENST00000680766.1:ENST00000679448.1:ENST00000681412.1:ENST00000680047.1:ENST00000679474.1:ENST00000680952.1:ENST00000679457.1:ENST00000679722.1:ENST00000680074.1:ENST00000674381.2:ENST00000359028.7:ENST00000491695.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	37	2	4.45629	4.69527	4.93425	0.0246089	0.00281048	0.12011	0.0488779
chr1	26463916	26464015	50522	0	+	0.313131	(0.28,0.32]	chr1	6360	34	INTRON	INTRON	DHDDS	ENSG00000117682.17	ENST00000434391.6:ENST00000236342.12:ENST00000525682.6:ENST00000526219.5:ENST00000360009.6:ENST00000431933.5:ENST00000416052.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	38	2	4.52233	4.69482	4.86731	0.0129279	0.0116253	0.0990564	0.0889104
chr1	62438798	62438898	131248	0	+	0.29	(0.28,0.32]	chr1	14890	10	INTRON	INTRON	USP1	ENSG00000162607.13	ENST00000452143.5:ENST00000442679.5:ENST00000371146.5:ENST00000339950.5	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.52233	4.69482	4.86731	0.0129279	0.0116253	0.0990564	0.0889104
chr5	32372824	32372923	2598591	0	-	0.282828	(0.28,0.32]	chr5	246875	80	INTRON	INTRON	ZFR	ENSG00000056097.16	ENST00000265069.13:ENST00000514356.5:ENST00000510369.5:ENST00000507465.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	38	2	4.52233	4.69482	4.86731	0.0129279	0.0116253	0.0990564	0.0889104
chr5	79648416	79648516	2399098	0	+	0.32	(0.28,0.32]	chr5	231730	4	SS3_PROX	SS3_PROX:INTRON	TENT2	ENSG00000164329.14	ENST00000423041.6:ENST00000504233.5:ENST00000453514.6:ENST00000428308.6:ENST00000296783.7:ENST00000509227.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	38	2	4.52233	4.69482	4.86731	0.0129279	0.0116253	0.0990564	0.0889104
chr7	119552695	119552795	3626863	0	-	0.31	(0.28,0.32]	chr7	337315	522	INTRON	INTRON	LINC02476	ENSG00000225546.6	ENST00000660268.1	lncRNA	lncRNA	lncRNA	lncRNA	0	38	2	4.52233	4.69482	4.86731	0.0129279	0.0116253	0.0990564	0.0889104
chrX	155883626	155883724	7740817	0	+	0.285714	(0.28,0.32]	chrX	792614	18	INTRON	INTRON	VAMP7	ENSG00000124333.16	ENST00000286448.12:ENST00000479687.6:ENST00000488344.6:ENST00000463317.6:ENST00000262640.11:ENST00000460621.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	38	2	4.52233	4.69482	4.86731	0.0129279	0.0116253	0.0990564	0.0889104
chr10	21551215	21551315	4404579	0	+	0.35	(0.32,0.35]	chr10	406427	95	INTRON	INTRON	MLLT10	ENSG00000078403.17	ENST00000651097.1:ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000377100.8:ENST00000377091.7:ENST00000650772.1:ENST00000651298.1:ENST00000652497.1:ENST00000495130.5:ENST00000377059.7:ENST00000621220.4:ENST00000476557.5:ENST00000462999.5:ENST00000430455.2:ENST00000479634.1:ENST00000480415.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	37	2	4.55661	4.6947399999999995	4.83287	0.0095071	0.00927858	0.0855292	0.0817766
chr2	230343668	230343767	1028187	0	+	0.333333	(0.32,0.35]	chr2	109716	11	INTRON	INTRON	SP140L	ENSG00000185404.17	ENST00000444636.5:ENST00000415673.7:ENST00000243810.10:ENST00000396563.8:ENST00000458341.1	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	4.55661	4.6947399999999995	4.83287	0.0095071	0.00927858	0.0855292	0.0817766
chr21	36410264	36410363	7404636	0	+	0.333333	(0.32,0.35]	chr21	754474	4	INTRON	INTRON	CHAF1B	ENSG00000159259.8	ENST00000314103.6:ENST00000481458.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	37	2	4.55661	4.6947399999999995	4.83287	0.0095071	0.00927858	0.0855292	0.0817766
chr6	68835782	68835882	2888324	0	+	0.34	(0.32,0.35]	chr6	273730	1960	INTRON	INTRON	ADGRB3	ENSG00000135298.15	ENST00000370598.6:ENST00000684661.1:ENST00000546190.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	37	2	4.55661	4.6947399999999995	4.83287	0.0095071	0.00927858	0.0855292	0.0817766
chr11	78395269	78395369	5000162	0	-	0.46	(0.44,0.476]	chr11	472472	308	INTRON	INTRON	GAB2	ENSG00000033327.13	ENST00000361507.5:ENST00000526030.1:ENST00000528886.5:ENST00000530915.1:ENST00000534823.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	35	2	4.60647	4.6947	4.78293	0.0102339	0.00292033	0.0850389	0.0494641
chr16	30229371	30229469	6472392	0	-	0.469388	(0.44,0.476]	chr16	625529	5	INTRON	INTRON	NPIPB13	ENSG00000198064.14	ENST00000520915.5:ENST00000562937.5:ENST00000618637.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	35	2	4.60647	4.6947	4.78293	0.0102339	0.00292033	0.0850389	0.0494641
chr8	102384701	102384801	4012476	0	-	0.45	(0.44,0.476]	chr8	367237	227	INTRON	INTRON	UBR5	ENSG00000104517.13	ENST00000520539.6:ENST00000220959.8:ENST00000521922.5	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.60647	4.6947	4.78293	0.0102339	0.00292033	0.0850389	0.0494641
chr6	15456566	15456666	2825055	0	+	0.37	(0.35,0.378]	chr6	265210	40	INTRON	INTRON	JARID2	ENSG00000008083.14	ENST00000341776.7:ENST00000397311.4	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.5655	4.694635	4.82377	0.0155464	0.00325499	0.100909	0.0524329
chr9	83681971	83682067	4272820	0	-	0.354167	(0.35,0.378]	chr9	392969	16	INTRON	INTRON	UBQLN1	ENSG00000135018.14	ENST00000376395.9:ENST00000533705.5:ENST00000257468.11:ENST00000529923.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	36	2	4.5655	4.694635	4.82377	0.0155464	0.00325499	0.100909	0.0524329
chr1	151258271	151258370	225447	0	+	0.474747	(0.44,0.476]	chr1	25737	31	INTRON	INTRON	PSMD4	ENSG00000159352.16	ENST00000368881.8:ENST00000368884.8:ENST00000461434.1:ENST00000462970.5:ENST00000476855.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	35	2	4.68564	4.694595	4.70355	0.00816201	0.00383786	0.0766625	0.0562562
chr1	226397814	226397913	648279	0	-	0.454545	(0.44,0.476]	chr1	76867	45	INTRON	INTRON	PARP1	ENSG00000143799.14	ENST00000366794.10:ENST00000677203.1:ENST00000677884.1:ENST00000678560.1:ENST00000677091.1:ENST00000678144.1:ENST00000678781.1:ENST00000676685.1:ENST00000679276.1:ENST00000676709.1:ENST00000366792.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	35	2	4.68564	4.694595	4.70355	0.00816201	0.00383786	0.0766625	0.0562562
chr10	119055551	119055649	4704653	0	-	0.44898	(0.44,0.476]	chr10	433947	39	INTRON	INTRON	EIF3A	ENSG00000107581.13	ENST00000369144.8:ENST00000541549.2	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.68564	4.694595	4.70355	0.00816201	0.00383786	0.0766625	0.0562562
chr16	30229175	30229273	6472390	0	-	0.44898	(0.44,0.476]	chr16	625529	3	INTRON	INTRON	NPIPB13	ENSG00000198064.14	ENST00000520915.5:ENST00000562937.5:ENST00000618637.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	35	2	4.68564	4.694595	4.70355	0.00816201	0.00383786	0.0766625	0.0562562
chr17	19255920	19256020	6570925	0	+	0.46	(0.44,0.476]	chr17	638938	60	INTRON	INTRON	EPN2	ENSG00000072134.16	ENST00000582015.5:ENST00000584707.5:ENST00000584633.1:ENST00000441293.2:ENST00000314728.10:ENST00000347697.6:ENST00000395618.7:ENST00000580579.5:ENST00000577692.5:ENST00000583197.5:ENST00000582659.5:ENST00000395628.6:ENST00000575595.5:ENST00000494192.6:ENST00000582234.5:ENST00000581024.5:ENST00000577244.5:ENST00000582969.5:ENST00000584150.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	35	2	4.68564	4.694595	4.70355	0.00816201	0.00383786	0.0766625	0.0562562
chr8	30711078	30711174	3932579	0	-	0.354167	(0.35,0.378]	chr8	360263	8	INTRON	INTRON	GSR	ENSG00000104687.14	ENST00000221130.11:ENST00000643653.1:ENST00000643525.1:ENST00000537535.5:ENST00000541648.5:ENST00000546342.5:ENST00000523295.5:ENST00000521479.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	78	2	4.0309	4.69459	5.35828	0.00135282	7.36864e-5	0.0336321	0.00714826
chr12	56342591	56342691	5334678	0	-	0.45	(0.44,0.476]	chr12	509746	11	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	STAT2	ENSG00000170581.14	ENST00000314128.9:ENST00000556539.5:ENST00000651301.1:ENST00000651915.1:ENST00000651934.1:ENST00000652091.1:ENST00000651805.1:ENST00000651078.1:ENST00000650805.1:ENST00000652741.1:ENST00000652624.1:ENST00000556140.6:ENST00000652398.1:ENST00000651967.1:ENST00000651339.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	97	2	3.15639	4.69456	6.23273	3.93757e-4	1.47185e-5	0.0178567	0.00307878
chr14	54429760	54429859	5897780	0	-	0.373737	(0.35,0.378]	chr14	560114	1	SS5_PROX	SS5_PROX:INTRON	CNIH1	ENSG00000100528.12	ENST00000216416.9:ENST00000395573.8:ENST00000557659.5:ENST00000553660.5:ENST00000557690.5:ENST00000554683.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	37	2	4.29839	4.694455	5.09052	0.0294717	0.00123501	0.128055	0.0326215
chr1	15631752	15631851	33624	0	+	0.363636	(0.35,0.378]	chr1	4090	8	INTRON	INTRON	DDI2	ENSG00000197312.12	ENST00000480945.6:ENST00000486680.1:ENST00000320153.10:ENST00000483899.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	36	2	4.66929	4.6944099999999995	4.71953	0.0103314	0.00541617	0.0850389	0.066545000000000007
chr10	42821192	42821292	4428423	0	+	0.37	(0.35,0.378]	chr10	408156	2	SS5_PROX	SS5_PROX:INTRON	BMS1	ENSG00000165733.8	ENST00000374518.6	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.66929	4.6944099999999995	4.71953	0.0103314	0.00541617	0.0850389	0.066545000000000007
chr12	16349684	16349780	5085651	0	+	0.375	(0.35,0.378]	chr12	480656	7	INTRON	INTRON	MGST1	ENSG00000008394.13	ENST00000010404.6:ENST00000536371.5:ENST00000396210.8:ENST00000543076.5:ENST00000539036.5:ENST00000542256.5:ENST00000537878.5:ENST00000539708.5:ENST00000535309.5:ENST00000396209.5:ENST00000540056.5:ENST00000540126.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	36	2	4.66929	4.6944099999999995	4.71953	0.0103314	0.00541617	0.0850389	0.066545000000000007
chr5	134785121	134785202	2490654	0	+	0.37037	(0.35,0.378]	chr5	237931	2	SS3_PROX	SS3_PROX:INTRON	DDX46	ENSG00000145833.16	ENST00000628477.2:ENST00000452510.7:ENST00000507392.5:ENST00000354283.8:ENST00000513592.5:ENST00000509178.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	36	2	4.66929	4.6944099999999995	4.71953	0.0103314	0.00541617	0.0850389	0.066545000000000007
chr8	89601398	89601497	3983697	0	-	0.353535	(0.35,0.378]	chr8	364919	23	INTRON	INTRON	RIPK2-DT	ENSG00000251136.10	ENST00000688654.1:ENST00000690564.1:ENST00000661105.1	lncRNA	lncRNA	lncRNA	lncRNA	0	36	2	4.66929	4.6944099999999995	4.71953	0.0103314	0.00541617	0.0850389	0.066545000000000007
chr3	49009623	49009723	1422194	0	+	0.39	(0.378,0.408]	chr3	149598	2	INTRON	INTRON	WDR6	ENSG00000178252.19	ENST00000395474.7:ENST00000610967.4:ENST00000429900.6:ENST00000488572.6:ENST00000489684.2:ENST00000462064.5:ENST00000608424.6:ENST00000438660.5:ENST00000473238.6:ENST00000415265.6:ENST00000452875.5:ENST00000471162.5:ENST00000420783.7:ENST00000627177.1:ENST00000448293.5:ENST00000472878.5:ENST00000419837.1:ENST00000461687.1:ENST00000489427.1:ENST00000491365.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	38	2	4.21226	4.694265	5.17627	0.0177403	0.00208234	0.11319	0.0411801
chr6	83189848	83189940	3145849	0	-	0.347826	(0.32,0.35]	chr6	293319	7	INTRON	INTRON	PGM3	ENSG00000013375.16	ENST00000513973.6:ENST00000512866.5:ENST00000650640.1:ENST00000616566.5:ENST00000283977.9:ENST00000651425.1:ENST00000650642.1:ENST00000651204.1:ENST00000506587.5:ENST00000509219.2:ENST00000652468.1:ENST00000510258.1:ENST00000505470.5:ENST00000507554.1:ENST00000508748.5:ENST00000503094.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	87	2	3.20216	4.6942450000000004	6.18633	0.00480708	1.03016e-5	0.0602209	0.00235018
chr13	99556534	99556631	5527442	0	+	0.391753	(0.378,0.408]	chr13	528424	5	INTRON	INTRON	TM9SF2	ENSG00000125304.10	ENST00000642475.1:ENST00000376387.5	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	4.21563	4.69422	5.17281	0.0315429	7.27294e-4	0.13151	0.0245647
chr4	169682905	169683004	2080506	0	+	0.393939	(0.378,0.408]	chr4	205626	23	INTRON	INTRON	CLCN3	ENSG00000109572.15	ENST00000511092.5:ENST00000347613.8:ENST00000360642.7:ENST00000512813.5:ENST00000513761.6:ENST00000613795.4:ENST00000507875.5	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	4.21563	4.69422	5.17281	0.0315429	7.27294e-4	0.13151	0.0245647
chr1	157045083	157045177	569570	0	-	0.265957	[0,0.28]	chr1	68661	9	UTR5	UTR5:EXON_MRNA	ARHGEF11	ENSG00000132694.19	ENST00000368194.8	protein_coding	protein_coding	protein_coding	protein_coding	0	40	2	4.29536	4.694084999999999	5.09281	0.0590175	0.00372534	0.167915	0.0561984
chr1	193141242	193141295	284805	0	+	0.264151	[0,0.28]	chr1	32781	1	SS5_PROX	SS5_PROX:INTRON	CDC73	ENSG00000134371.14	ENST00000649895.1:ENST00000643006.1:ENST00000367435.5:ENST00000650197.1:ENST00000643784.1:ENST00000648071.1:ENST00000635846.1:ENST00000649606.1:ENST00000647662.1:ENST00000649706.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	40	2	4.29536	4.694084999999999	5.09281	0.0590175	0.00372534	0.167915	0.0561984
chr10	22317259	22317356	4406552	0	+	0.278351	[0,0.28]	chr10	406615	3	SS5_PROX	SS5_PROX:INTRON	COMMD3:COMMD3-BMI1	ENSG00000148444.16:ENSG00000269897.5	ENST00000602574.5:ENST00000475460.6:ENST00000376836.8:ENST00000468179.6:ENST00000602390.5:ENST00000479958.6:ENST00000470045.1:ENST00000456711.5:ENST00000444869.5:ENST00000472610.5:ENST00000496071.5:ENST00000489125.2:ENST00000463409.6:ENST00000463688.6:ENST00000448361.5:ENST00000417470.1:ENST00000468469.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	40	2	4.29536	4.694084999999999	5.09281	0.0590175	0.00372534	0.167915	0.0561984
chr2	15410465	15410565	1071635	0	-	0.28	[0,0.28]	chr2	114344	78	INTRON	INTRON	NBAS	ENSG00000151779.13	ENST00000281513.10:ENST00000442506.5:ENST00000441755.5:ENST00000429842.1	protein_coding	protein_coding	protein_coding	protein_coding	0	40	2	4.29536	4.694084999999999	5.09281	0.0590175	0.00372534	0.167915	0.0561984
chr17	36961586	36961686	6602637	0	+	0.37	(0.35,0.378]	chr17	642673	73	INTRON	INTRON	AATF	ENSG00000275700.6	ENST00000680340.1:ENST00000680356.1:ENST00000616434.2:ENST00000680579.1:ENST00000681800.1:ENST00000680330.1:ENST00000680807.1:ENST00000679985.1:ENST00000679508.1:ENST00000619387.5:ENST00000679997.1:ENST00000613840.1:ENST00000681062.1:ENST00000679881.1:ENST00000680782.1:ENST00000679600.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	37	2	4.40128	4.6934450000000005	4.98561	0.0120289	0.00474226	0.0962115	0.0600445
chr7	143901660	143901760	3665485	0	-	0.55	(0.515,0.57]	chr7	340345	3	SS5_PROX	SS5_PROX:INTRON	TCAF1	ENSG00000198420.10	ENST00000479870.6:ENST00000355951.2:ENST00000478172.1	protein_coding	protein_coding	protein_coding	protein_coding	2	93	2	3.0958	4.69335	6.2909	5.63557e-4	6.76407e-7	0.0219303	4.55248e-4
chrX	121225623	121225723	7715446	0	+	0.32	(0.28,0.32]	chrX	789390	394	INTRON	INTRON	ENSG00000286163	ENSG00000286163.1	ENST00000651788.1	lncRNA	lncRNA	lncRNA	lncRNA	0	39	2	4.2432	4.6933050000000005	5.14341	0.0479043	0.00185891	0.153019	0.039946
chr14	73069752	73069852	5784192	0	+	0.17	[0,0.28]	chr14	547816	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	RBM25	ENSG00000119707.14	ENST00000527432.5:ENST00000531500.5:ENST00000261973.12:ENST00000532683.5:ENST00000525321.5:ENST00000526754.5:ENST00000525161.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	40	2	4.38376	4.693194999999999	5.00263	0.0258536	0.013055	0.133676	0.093385
chr16	18158468	18158568	6454219	0	-	0.19	[0,0.28]	chr16	621964	70	INTRON	INTRON	ENSG00000260242	ENSG00000260242.1	ENST00000563866.1	lncRNA	lncRNA	lncRNA	lncRNA	0	40	2	4.38376	4.693194999999999	5.00263	0.0258536	0.013055	0.133676	0.093385
chr22	20318388	20318478	7556949	0	-	0.4	(0.378,0.408]	chr22	772743	4	EXON_LNCRNA	EXON_LNCRNA:INTRON	DGCR6L:ENSG00000273343	ENSG00000128185.10:ENSG00000273343.1	ENST00000248879.8:ENST00000405465.3:ENST00000443409.1:ENST00000608275.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:nonsense_mediated_decay:lncRNA	0	37	2	4.32174	4.6929300000000005	5.06412	0.0132362	0.0030522	0.0999551	0.0493883
chr8	58600696	58600784	3955319	0	-	0.295455	(0.28,0.32]	chr8	362848	3	INTRON	INTRON	NSMAF	ENSG00000035681.9	ENST00000038176.8:ENST00000649465.1:ENST00000427130.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	39	2	4.33863	4.69221	5.04579	0.0207276	0.00714672	0.122348	0.0723634
chr5	177327372	177327472	2777356	0	-	0.51	(0.476,0.515]	chr5	261667	92	INTRON	INTRON	LMAN2	ENSG00000169223.16	ENST00000694903.1	protein_coding	processed_transcript	protein_coding	processed_transcript	0	35	2	4.53023	4.69201	4.85379	0.0119748	0.00234214	0.0899583	0.0442989
chr7	138466000	138466100	3434698	0	+	0.52	(0.515,0.57]	chr7	319959	43	INTRON	INTRON	TRIM24	ENSG00000122779.18	ENST00000343526.9:ENST00000415680.6:ENST00000497516.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	94	2	2.9572600000000002	4.691995	6.42673	0.00108918	2.63409e-7	0.0303873	2.52144e-4
chr1	30970182	30970281	411927	0	-	0.272727	[0,0.28]	chr1	49679	13	INTRON	INTRON	PUM1	ENSG00000134644.16	ENST00000426105.7:ENST00000373747.7:ENST00000257075.9:ENST00000424085.6:ENST00000525843.5:ENST00000440538.6:ENST00000498419.5:ENST00000373741.8:ENST00000373742.6:ENST00000471894.1:ENST00000490546.1:ENST00000532678.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	90	2	3.75586	4.691895000000001	5.62793	0.0022037	5.203e-4	0.0417893	0.0204523
chr4	55601574	55601674	2150346	0	-	0.19	[0,0.28]	chr4	211609	6	INTRON	INTRON	NMU	ENSG00000109255.11	ENST00000511469.5:ENST00000264218.7:ENST00000505262.5:ENST00000507338.1:ENST00000515325.5:ENST00000509371.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	99	2	3.15102	4.69187	6.23272	0.00767596	3.87936e-5	0.0753665	0.00503037
chr12	27012829	27012921	5299178	0	-	0.51087	(0.476,0.515]	chr12	504150	2	UTR5	UTR5:EXON_MRNA:INTRON	TM7SF3	ENSG00000064115.11	ENST00000343028.9:ENST00000542667.5:ENST00000535819.1:ENST00000543803.5:ENST00000542019.1:ENST00000539741.5:ENST00000543088.5:ENST00000535423.5:ENST00000512808.2:ENST00000545600.1:ENST00000539399.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	35	2	4.61519	4.69173	4.76827	0.00600704	0.00528365	0.0674604	0.0656295
chr15	43833561	43833660	6012699	0	+	0.484848	(0.476,0.515]	chr15	572754	48	INTRON	INTRON	WDR76	ENSG00000092470.12	ENST00000381246.6:ENST00000452115.1:ENST00000263795.11	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.61519	4.69173	4.76827	0.00600704	0.00528365	0.0674604	0.0656295
chr9	36667152	36667250	4117429	0	+	0.5	(0.476,0.515]	chr9	375324	12	INTRON	INTRON	MELK	ENSG00000165304.8	ENST00000543751.5:ENST00000536860.5:ENST00000541717.4:ENST00000536329.5:ENST00000627766.2:ENST00000298048.7:ENST00000536987.5:ENST00000545008.5:ENST00000626154.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	35	2	4.61519	4.69173	4.76827	0.00600704	0.00528365	0.0674604	0.0656295
chr2	107724046	107724146	1205790	0	-	0.28	[0,0.28]	chr2	128532	64	INTRON	INTRON	LINC01885:ENSG00000286769	ENSG00000237880.2:ENSG00000286769.1	ENST00000654481.1:ENST00000669817.1	lncRNA	lncRNA	lncRNA	lncRNA	1	90	2	3.3753	4.691685	6.00807	0.00242466	6.0063e-4	0.0454587	0.0226059
chr1	53829745	53829843	460525	0	-	0.428571	(0.408,0.44]	chr1	55439	12	INTRON	INTRON	NDC1	ENSG00000058804.12	ENST00000371429.4:ENST00000480952.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	35	2	4.59979	4.691635	4.78348	0.0109537	0.00290352	0.0873034	0.0494641
chr1	223719829	223719928	320328	0	+	0.424242	(0.408,0.44]	chr1	36860	16	INTRON	INTRON	CAPN2	ENSG00000162909.18	ENST00000433674.6:ENST00000434648.5:ENST00000295006.6	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.59979	4.691635	4.78348	0.0109537	0.00290352	0.0873034	0.0494641
chr16	29569428	29569528	6471294	0	-	0.42	(0.408,0.44]	chr16	625296	1	SS3_PROX	SS3_PROX:INTRON	ENSG00000288632:SMG1P2	ENSG00000288632.1:ENSG00000205534.6	ENST00000675579.1:ENST00000566127.1	lncRNA	lncRNA	lncRNA:transcribed_unprocessed_pseudogene	lncRNA:transcribed_unprocessed_pseudogene	0	35	2	4.59979	4.691635	4.78348	0.0109537	0.00290352	0.0873034	0.0494641
chr19	27727684	27727784	7164653	0	-	0.44	(0.408,0.44]	chr19	724108	4	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	LINC00662	ENSG00000261824.8	ENST00000671282.1:ENST00000666409.1:ENST00000667518.1:ENST00000665996.1:ENST00000666003.1:ENST00000655465.1:ENST00000670572.1:ENST00000662487.1:ENST00000666658.1:ENST00000658694.1:ENST00000588027.5:ENST00000656086.1:ENST00000658434.1:ENST00000663775.1:ENST00000656191.1:ENST00000654098.1:ENST00000659785.1:ENST00000664720.1:ENST00000665102.1:ENST00000667396.1:ENST00000653317.1:ENST00000590677.6:ENST00000655166.2:ENST00000656647.1:ENST00000654565.1:ENST00000687807.1:ENST00000668933.1:ENST00000659995.1:ENST00000664383.1:ENST00000657677.1:ENST00000654443.1:ENST00000653471.1:ENST00000654151.1:ENST00000588150.5:ENST00000659922.1:ENST00000668560.1:ENST00000659734.1:ENST00000657730.1:ENST00000664688.1:ENST00000661680.2	lncRNA	lncRNA	lncRNA	lncRNA	0	35	2	4.59979	4.691635	4.78348	0.0109537	0.00290352	0.0873034	0.0494641
chr20	50087941	50088041	7353701	0	-	0.44	(0.408,0.44]	chr20	749863	33	INTRON	INTRON	UBE2V1	ENSG00000244687.13	ENST00000340309.7:ENST00000371677.7:ENST00000415862.6:ENST00000557021.5:ENST00000617119.4:ENST00000625172.3:ENST00000396059.7:ENST00000371674.8:ENST00000371657.9:ENST00000483534.5:ENST00000492371.6:ENST00000486653.5:ENST00000490555.1:ENST00000493090.5:ENST00000467839.5:ENST00000472923.5:ENST00000432266.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	35	2	4.59979	4.691635	4.78348	0.0109537	0.00290352	0.0873034	0.0494641
chr4	77818473	77818573	2167027	0	-	0.43	(0.408,0.44]	chr4	213720	1	SS5_PROX	SS5_PROX:INTRON	CNOT6L	ENSG00000138767.14	ENST00000504123.7:ENST00000649644.1:ENST00000515506.6:ENST00000512485.6:ENST00000504804.7:ENST00000506166.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	35	2	4.59979	4.691635	4.78348	0.0109537	0.00290352	0.0873034	0.0494641
chr6	12060718	12060817	2814713	0	+	0.414141	(0.408,0.44]	chr6	264800	216	INTRON	INTRON	HIVEP1	ENSG00000095951.17	ENST00000491710.5:ENST00000487103.5:ENST00000379388.7:ENST00000627968.2:ENST00000541134.5:ENST00000442081.6:ENST00000478545.1	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.59979	4.691635	4.78348	0.0109537	0.00290352	0.0873034	0.0494641
chr7	121053307	121053406	3394287	0	+	0.343434	(0.32,0.35]	chr7	317696	14	INTRON	INTRON	CPED1	ENSG00000106034.18	ENST00000310396.10:ENST00000428526.5:ENST00000450913.6:ENST00000520801.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	80	2	3.91666	4.69154	5.46642	0.00127669	1.54585e-4	0.0326395	0.0106835
chr11	108057147	108057247	4856218	0	+	0.43	(0.408,0.44]	chr11	452903	18	INTRON	INTRON	CUL5	ENSG00000166266.14	ENST00000393094.7:ENST00000531427.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	35	2	4.67894	4.691520000000001	4.7041	0.0087648	0.00381677	0.0788605	0.0562562
chr1	243189518	243189618	668054	0	-	0.3	(0.28,0.32]	chr1	79286	27	INTRON	INTRON	CEP170	ENSG00000143702.16	ENST00000366544.5:ENST00000366543.5:ENST00000366542.6:ENST00000336415.8	protein_coding	protein_coding	protein_coding	protein_coding	1	83	2	3.74806	4.69145	5.63484	0.00108324	4.11943e-4	0.0303015	0.0181365
chr1	150573921	150573972	551027	0	-	0.333333	(0.32,0.35]	chr1	64758	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MCL1	ENSG00000143384.14	ENST00000617352.1:ENST00000678770.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	81	2	3.3273	4.691025	6.05475	0.00218894	1.2096e-4	0.0435144	0.00992813
chr7	76354522	76354622	3562497	0	-	0.32	(0.28,0.32]	chr7	331942	239	INTRON	INTRON	YWHAG	ENSG00000170027.7	ENST00000307630.5	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	4.12807	4.690975	5.25388	0.0338135	0.00385849	0.146709	0.0542786
chrX	134771942	134772040	7893242	0	-	0.367347	(0.35,0.378]	chrX	803513	7	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	PABIR2	ENSG00000156504.17	ENST00000343004.10:ENST00000370790.5:ENST00000298090.10:ENST00000478384.5:ENST00000486347.5:ENST00000465128.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	82	2	3.54684	4.690865	5.83489	0.00119142	4.33823e-5	0.0315806	0.00532052
chr3	179369894	179369993	1567161	0	+	0.272727	[0,0.28]	chr3	162114	14	INTRON	INTRON	MFN1	ENSG00000171109.19	ENST00000471841.6:ENST00000357390.8:ENST00000263969.9:ENST00000474903.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	39	2	4.46726	4.6907	4.91414	0.0427997	0.0064519	0.148082	0.0730725
chr5	34943769	34943869	2337506	0	+	0.28	[0,0.28]	chr5	225763	22	INTRON	INTRON	DNAJC21	ENSG00000168724.17	ENST00000648817.1:ENST00000382021.2:ENST00000642851.1:ENST00000642675.1:ENST00000644357.1:ENST00000642285.1:ENST00000646714.1:ENST00000514237.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	39	2	4.46726	4.6907	4.91414	0.0427997	0.0064519	0.148082	0.0730725
chr5	37297686	37297783	2601996	0	-	0.216495	[0,0.28]	chr5	247346	29	INTRON	INTRON	NUP155	ENSG00000113569.16	ENST00000231498.8:ENST00000502533.5:ENST00000381843.6:ENST00000513532.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	39	2	4.46726	4.6907	4.91414	0.0427997	0.0064519	0.148082	0.0730725
chr8	81710824	81710924	3979462	0	-	0.27	[0,0.28]	chr8	364623	16	INTRON	INTRON	ZFAND1	ENSG00000104231.11	ENST00000524305.5:ENST00000220669.10:ENST00000523096.5:ENST00000522520.5:ENST00000522032.1:ENST00000519464.5:ENST00000521895.5:ENST00000521287.5:ENST00000523431.5:ENST00000520635.5:ENST00000519523.5:ENST00000517588.5:ENST00000520604.5:ENST00000523361.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	39	2	4.46726	4.6907	4.91414	0.0427997	0.0064519	0.148082	0.0730725
chr8	104537758	104537858	4014209	0	-	0.24	[0,0.28]	chr8	367439	54	INTRON	INTRON	LRP12	ENSG00000147650.12	ENST00000424843.6:ENST00000276654.10:ENST00000520770.1:ENST00000519675.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	39	2	4.46726	4.6907	4.91414	0.0427997	0.0064519	0.148082	0.0730725
chr1	16200994	16201090	381325	0	-	0.447917	(0.44,0.476]	chr1	44753	14	INTRON	INTRON	ARHGEF19	ENSG00000142632.17	ENST00000270747.8:ENST00000478117.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	35	2	4.5227	4.690435000000001	4.85817	0.0128818	0.00223254	0.0926667	0.0435144
chr21	38161778	38161878	7408256	0	+	0.46	(0.44,0.476]	chr21	754990	43	INTRON	INTRON	KCNJ15	ENSG00000157551.19	ENST00000472602.1:ENST00000549805.5:ENST00000547341.5:ENST00000549932.5:ENST00000547595.5:ENST00000548700.5:ENST00000551422.5:ENST00000549158.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	35	2	4.5227	4.690435000000001	4.85817	0.0128818	0.00223254	0.0926667	0.0435144
chr4	122950331	122950428	2035910	0	+	0.474227	(0.44,0.476]	chr4	202340	25	INTRON	INTRON	SPATA5	ENSG00000145375.9	ENST00000675612.1:ENST00000274008.5:ENST00000674886.1:ENST00000422835.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	35	2	4.5227	4.690435000000001	4.85817	0.0128818	0.00223254	0.0926667	0.0435144
chr8	15565084	15565184	3704385	0	+	0.47	(0.44,0.476]	chr8	343556	30	INTRON	INTRON	TUSC3	ENSG00000104723.21	ENST00000503191.5:ENST00000382020.8:ENST00000515859.5:ENST00000506802.5:ENST00000503731.6:ENST00000510836.5:ENST00000509380.5:ENST00000507400.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	35	2	4.5227	4.690435000000001	4.85817	0.0128818	0.00223254	0.0926667	0.0435144
chr4	75667292	75667391	2162051	0	-	0.262626	[0,0.28]	chr4	213024	41	INTRON	INTRON	G3BP2	ENSG00000138757.15	ENST00000676666.1:ENST00000678062.1:ENST00000678100.1:ENST00000678122.1:ENST00000677265.1:ENST00000678971.1:ENST00000679281.1:ENST00000677333.1:ENST00000676470.1:ENST00000677620.1:ENST00000677606.1:ENST00000678798.1:ENST00000677583.1:ENST00000678447.1:ENST00000678875.1:ENST00000678244.1:ENST00000676974.1:ENST00000677003.1:ENST00000677889.1:ENST00000678329.1:ENST00000676584.1:ENST00000678552.1:ENST00000677192.1:ENST00000677727.1:ENST00000678265.1:ENST00000676839.1:ENST00000677876.1:ENST00000678123.1:ENST00000678578.1:ENST00000677171.1:ENST00000395719.7:ENST00000359707.9:ENST00000677060.1:ENST00000679294.1:ENST00000677201.1:ENST00000677952.1:ENST00000677125.1:ENST00000678273.1:ENST00000357854.7:ENST00000677162.1:ENST00000677566.1:ENST00000677970.1:ENST00000503660.5:ENST00000678670.1:ENST00000502654.5:ENST00000507745.5:ENST00000513927.1:ENST00000511146.5:ENST00000507252.5:ENST00000507701.1:ENST00000499709.3:ENST00000511868.6:ENST00000508510.6:ENST00000676702.1:ENST00000677145.1:ENST00000509561.6:ENST00000677489.1:ENST00000678389.1:ENST00000676485.1:ENST00000678908.1:ENST00000678843.1:ENST00000676641.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	39	2	4.55618	4.6902550000000005	4.82433	0.0200334	0.0171034	0.110899	0.109608
chr16	15872492	15872592	6451789	0	-	0.45	(0.44,0.476]	chr16	621907	46	INTRON	INTRON	CEP20	ENSG00000133393.13	ENST00000255759.11:ENST00000573968.5:ENST00000573087.5:ENST00000573396.5:ENST00000575744.5:ENST00000572415.5:ENST00000575073.5:ENST00000573429.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	35	2	4.61954	4.69011	4.76068	0.00653414	0.00506805	0.0699952	0.0646039
chr19	10151097	10151197	7134401	0	-	0.46	(0.44,0.476]	chr19	719132	3	SS5_PROX	SS5_PROX:INTRON	DNMT1	ENSG00000130816.17	ENST00000586667.2:ENST00000340748.8:ENST00000359526.9:ENST00000592705.5:ENST00000679103.1:ENST00000677634.1:ENST00000676820.1:ENST00000677250.1:ENST00000677013.1:ENST00000677685.1:ENST00000677616.1:ENST00000676604.1:ENST00000678024.1:ENST00000676868.1:ENST00000677783.1:ENST00000678694.1:ENST00000679100.1:ENST00000678647.1:ENST00000676610.1:ENST00000678804.1:ENST00000679313.1:ENST00000677946.1:ENST00000586799.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	35	2	4.61954	4.69011	4.76068	0.00653414	0.00506805	0.0699952	0.0646039
chr1	223983109	223983197	643708	0	-	0.409091	(0.408,0.44]	chr1	76010	5	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GTF2IP20	ENSG00000272645.4	ENST00000634905.2:ENST00000431663.1:ENST00000685304.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	3	216	2	4.37098	4.689780000000001	5.00858	5.76123e-7	1.10884e-7	4.48558e-4	1.47965e-4
chr6	31624990	31625080	2843137	0	+	0.6	(0.57,1]	chr6	267594	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PRRC2A	ENSG00000204469.13	ENST00000376033.3:ENST00000376007.8:ENST00000469577.5:ENST00000464079.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	27	2	4.60161	4.689455000000001	4.7773	0.00142229	5.07088e-4	0.0340865	0.0202328
chr20	35741626	35741697	7336559	0	-	0.605634	(0.57,1]	chr20	747516	1	SS5_PROX	SS5_PROX:INTRON	RBM39	ENSG00000131051.24	ENST00000253363.11:ENST00000639702.1:ENST00000656873.1:ENST00000463004.5:ENST00000361162.10:ENST00000403542.6:ENST00000338163.10:ENST00000528062.7:ENST00000429968.5:ENST00000444878.5:ENST00000665058.1:ENST00000374038.7:ENST00000412738.5:ENST00000455343.5:ENST00000442447.5:ENST00000433027.5:ENST00000453310.5:ENST00000416529.5:ENST00000397370.3:ENST00000463098.5:ENST00000461849.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	27	2	4.67443	4.68935	4.70427	9.25341e-4	8.07515e-4	0.0278396	0.0258804
chrX	44913385	44913485	7649004	0	+	0.47	(0.44,0.476]	chrX	782726	390	INTRON	INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000675440.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000621147.5:ENST00000475233.1:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	96	2	3.31275	4.688975	6.0652	1.73222e-4	3.50238e-5	0.0114086	0.00499276
chr2	44322000	44322076	1110697	0	-	0.355263	(0.35,0.378]	chr2	119160	1	SS3_PROX	SS3_PROX:INTRON	PREPL	ENSG00000138078.16	ENST00000425263.5:ENST00000409411.6:ENST00000426481.5:ENST00000541738.5:ENST00000409957.5:ENST00000409936.5:ENST00000444696.5:ENST00000409272.5:ENST00000260648.10:ENST00000410081.5:ENST00000378520.7:ENST00000378511.7:ENST00000420756.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	82	2	4.27557	4.688915	5.10226	0.00327038	1.87054e-5	0.0508595	0.00330057
chr10	71828469	71828563	4642607	0	-	0.43617	(0.408,0.44]	chr10	427154	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PSAP	ENSG00000197746.15	ENST00000394936.8	protein_coding	protein_coding	protein_coding	protein_coding	1	76	2	4.18519	4.688605000000001	5.19202	0.0016671	2.59215e-5	0.0369207	0.00400663
chr10	63622651	63622750	4437225	0	+	0.373737	(0.35,0.378]	chr10	409280	19	UTR3	UTR3:EXON_MRNA	REEP3	ENSG00000165476.14	ENST00000373758.5	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.48184	4.688535	4.89523	0.0191702	0.00253947	0.108861	0.0465056
chr18	35049048	35049147	6888396	0	+	0.363636	(0.35,0.378]	chr18	682731	69	INTRON	INTRON	MAPRE2	ENSG00000166974.13	ENST00000413393.5:ENST00000591734.5:ENST00000589180.5:ENST00000587359.5:ENST00000436190.6:ENST00000588349.6:ENST00000538170.6:ENST00000300249.10:ENST00000588910.5:ENST00000585592.1:ENST00000589699.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	36	2	4.48184	4.688535	4.89523	0.0191702	0.00253947	0.108861	0.0465056
chr14	30965507	30965607	5857264	0	-	0.51	(0.476,0.515]	chr14	556508	11	INTRON	INTRON	STRN3	ENSG00000196792.12	ENST00000355683.9:ENST00000357479.10:ENST00000555358.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	80	2	3.10264	4.688465	6.27429	0.00543163	2.2825e-6	0.0645052	9.46989e-4
chr1	100282357	100282456	172436	0	+	0.353535	(0.35,0.378]	chr1	18762	47	INTRON	INTRON	RTCA	ENSG00000137996.13	ENST00000370128.9:ENST00000260563.4	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.58537	4.68808	4.79079	0.00846427	0.00703328	0.0776969	0.0754576
chr1	243236513	243236612	668531	0	-	0.363636	(0.35,0.378]	chr1	79325	108	INTRON	INTRON	CEP170	ENSG00000143702.16	ENST00000366544.5:ENST00000366543.5:ENST00000366542.6:ENST00000522191.5:ENST00000523424.5:ENST00000522522.5:ENST00000522995.1:ENST00000523581.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	36	2	4.58537	4.68808	4.79079	0.00846427	0.00703328	0.0776969	0.0754576
chr2	85379163	85379262	821422	0	+	0.363636	(0.35,0.378]	chr2	91518	13	INTRON	INTRON	ELMOD3	ENSG00000115459.18	ENST00000490508.5:ENST00000446464.7:ENST00000423095.7:ENST00000409344.7:ENST00000393852.8:ENST00000409013.8:ENST00000429764.5:ENST00000315658.11:ENST00000409890.6:ENST00000414593.5:ENST00000444108.7:ENST00000410106.5:ENST00000496957.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	36	2	4.58537	4.68808	4.79079	0.00846427	0.00703328	0.0776969	0.0754576
chr5	81292986	81293086	2662833	0	-	0.37	(0.35,0.378]	chr5	252321	418	INTRON	INTRON	CKMT2-AS1	ENSG00000247572.9	ENST00000663674.1:ENST00000503483.6:ENST00000511495.1:ENST00000512287.1:ENST00000502041.3:ENST00000690798.1:ENST00000670957.1:ENST00000660242.1:ENST00000500148.6:ENST00000669977.1:ENST00000656836.1:ENST00000501927.2:ENST00000505295.1	lncRNA	lncRNA	lncRNA	lncRNA	0	36	2	4.58537	4.68808	4.79079	0.00846427	0.00703328	0.0776969	0.0754576
chr2	107716802	107716902	1205717	0	-	0.24	[0,0.28]	chr2	128527	3	SS5_PROX	SS5_PROX:INTRON	LINC01885:ENSG00000286769	ENSG00000237880.2:ENSG00000286769.1	ENST00000654481.1:ENST00000669817.1	lncRNA	lncRNA	lncRNA	lncRNA	4	408	2	4.62692	4.688005	4.74909	1.24779e-6	9.4463e-8	7.24588e-4	1.33296e-4
chr2	239969021	239969120	1345147	0	-	0.373737	(0.35,0.378]	chr2	141026	44	INTRON	INTRON	NDUFA10	ENSG00000130414.13	ENST00000419408.5:ENST00000679183.1:ENST00000677057.1:ENST00000676782.1:ENST00000677407.1:ENST00000676929.1:ENST00000678455.1:ENST00000252711.7:ENST00000677692.1:ENST00000476216.6:ENST00000677395.1:ENST00000678188.1:ENST00000677979.1:ENST00000678914.1:ENST00000678562.1:ENST00000678832.1:ENST00000677155.1:ENST00000677764.1:ENST00000677294.1:ENST00000678468.1:ENST00000677324.1:ENST00000678158.1:ENST00000676491.1:ENST00000471378.1:ENST00000677114.1:ENST00000404554.5:ENST00000620965.5:ENST00000485344.6:ENST00000679308.1:ENST00000677567.1:ENST00000679158.1:ENST00000443626.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	76	2	3.54186	4.68774	5.83362	8.14353e-4	2.04087e-4	0.02604	0.0129859
chr1	173958492	173958591	587390	0	-	0.424242	(0.408,0.44]	chr1	70687	60	INTRON	INTRON	RC3H1	ENSG00000135870.12	ENST00000367696.7:ENST00000258349.8:ENST00000367694.2	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.51604	4.68738	4.85872	0.0137419	0.00221911	0.0949306	0.0435144
chr19	52655460	52655560	7206780	0	-	0.44	(0.408,0.44]	chr19	731400	7	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	ZNF83:ENSG00000269825	ENSG00000167766.20:ENSG00000269825.2	ENST00000600714.5:ENST00000601257.5:ENST00000594682.6:ENST00000687234.1:ENST00000598536.5:ENST00000595171.5:ENST00000596440.5:ENST00000602232.5:ENST00000598322.2:ENST00000598190.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	35	2	4.51604	4.68738	4.85872	0.0137419	0.00221911	0.0949306	0.0435144
chr3	47399789	47399888	1419790	0	+	0.434343	(0.408,0.44]	chr3	149091	32	INTRON	INTRON	PTPN23	ENSG00000076201.16	ENST00000602307.5:ENST00000456221.5:ENST00000265562.5:ENST00000683323.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	35	2	4.51604	4.68738	4.85872	0.0137419	0.00221911	0.0949306	0.0435144
chr3	172142139	172142239	1560575	0	+	0.42	(0.408,0.44]	chr3	161547	82	INTRON	INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000421757.5:ENST00000469491.5:ENST00000336824.8:ENST00000423424.5:ENST00000416957.5:ENST00000478016.1:ENST00000443501.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	35	2	4.51604	4.68738	4.85872	0.0137419	0.00221911	0.0949306	0.0435144
chr6	15404827	15404926	2824536	0	+	0.414141	(0.408,0.44]	chr6	265198	302	INTRON	INTRON	JARID2	ENSG00000008083.14	ENST00000341776.7:ENST00000397311.4	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.51604	4.68738	4.85872	0.0137419	0.00221911	0.0949306	0.0435144
chr6	142175198	142175297	2974610	0	+	0.414141	(0.408,0.44]	chr6	279088	44	INTRON	INTRON	VTA1	ENSG00000009844.16	ENST00000452973.6:ENST00000620996.4:ENST00000367621.1:ENST00000367630.9:ENST00000491881.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	35	2	4.51604	4.68738	4.85872	0.0137419	0.00221911	0.0949306	0.0435144
chr8	97815557	97815643	3810339	0	+	0.430233	(0.408,0.44]	chr8	352920	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	LAPTM4B	ENSG00000104341.17	ENST00000445593.6:ENST00000619747.1:ENST00000521545.7:ENST00000517924.5	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.51604	4.68738	4.85872	0.0137419	0.00221911	0.0949306	0.0435144
chr1	160250615	160250714	571492	0	-	0.414141	(0.408,0.44]	chr1	69176	62	INTRON	INTRON	DCAF8	ENSG00000132716.19	ENST00000326837.6:ENST00000368073.7:ENST00000368074.6:ENST00000461888.5:ENST00000475733.5:ENST00000610139.5:ENST00000447377.5:ENST00000495887.1:ENST00000440682.5:ENST00000407642.6:ENST00000419626.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	35	2	4.62009	4.687035	4.75398	0.00703931	0.00504155	0.0718189	0.0646039
chr3	138540144	138540244	1829092	0	-	0.41	(0.408,0.44]	chr3	183871	24	INTRON	INTRON	CEP70	ENSG00000114107.9	ENST00000264982.8:ENST00000489254.5:ENST00000484888.5:ENST00000474781.5:ENST00000481834.5:ENST00000468900.5:ENST00000462419.5:ENST00000478673.5:ENST00000464035.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	35	2	4.62009	4.687035	4.75398	0.00703931	0.00504155	0.0718189	0.0646039
chr5	157135628	157135728	2757567	0	-	0.42	(0.408,0.44]	chr5	260202	226	INTRON	INTRON	HAVCR2	ENSG00000135077.10	ENST00000524219.2	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.62009	4.687035	4.75398	0.00703931	0.00504155	0.0718189	0.0646039
chr7	10637343	10637443	3483153	0	-	0.44	(0.408,0.44]	chr7	325772	754	INTRON	INTRON	MGC4859	ENSG00000283117.1	ENST00000634803.1	lncRNA	lncRNA	lncRNA	lncRNA	0	35	2	4.62009	4.687035	4.75398	0.00703931	0.00504155	0.0718189	0.0646039
chr6	43568310	43568410	3097258	0	-	0.46	(0.44,0.476]	chr6	290104	2	SS5_PROX	SS5_PROX:INTRON	XPO5	ENSG00000124571.18	ENST00000265351.12	protein_coding	protein_coding	protein_coding	protein_coding	2	97	2	3.53227	4.68687	5.84147	1.03947e-4	5.02287e-5	0.00915599	0.00581045
chr15	43054042	43054141	6160161	0	-	0.464646	(0.44,0.476]	chr15	586519	52	INTRON	INTRON	UBR1	ENSG00000159459.12	ENST00000290650.9:ENST00000546274.6:ENST00000569971.5:ENST00000563239.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	72	2	3.75608	4.68679	5.6175	2.84938e-4	2.6487e-4	0.015495	0.0144071
chr10	27143373	27143470	4586177	0	-	0.494845	(0.476,0.515]	chr10	422765	5	INTRON	INTRON	YME1L1	ENSG00000136758.20	ENST00000376016.8:ENST00000613434.4:ENST00000326799.7:ENST00000491542.6:ENST00000427324.5:ENST00000396296.7	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	4.13586	4.686775	5.23769	0.031846	5.17244e-4	0.13151	0.0203753
chr1	28048282	28048382	408602	0	-	0.33	(0.32,0.35]	chr1	49211	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	EYA3	ENSG00000158161.16	ENST00000373871.8:ENST00000540618.5:ENST00000436342.6:ENST00000373864.5:ENST00000373863.3:ENST00000471498.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	79	2	3.82296	4.6861999999999995	5.54944	9.42646e-4	2.45656e-4	0.0280811	0.0138769
chrX	111705631	111705730	7702263	0	+	0.363636	(0.35,0.378]	chrX	788221	156	INTRON	INTRON	ALG13	ENSG00000101901.12	ENST00000487141.5:ENST00000394780.8:ENST00000251943.8:ENST00000610588.4:ENST00000621367.4:ENST00000622997.3:ENST00000624161.3:ENST00000636363.1:ENST00000624881.3:ENST00000495283.5:ENST00000486353.5:ENST00000623144.3:ENST00000470971.5:ENST00000623148.3:ENST00000471924.5:ENST00000436609.5:ENST00000470704.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	110	2	3.07438	4.685855	6.29733	9.54868e-4	3.29461e-6	0.0282401	0.00118351
chr2	58171834	58171932	1126041	0	-	0.510204	(0.476,0.515]	chr2	120898	27	EXON_MRNA	EXON_MRNA:INTRON	FANCL	ENSG00000115392.13	ENST00000696400.1:ENST00000403295.8:ENST00000696492.1:ENST00000427708.7:ENST00000696314.1:ENST00000696315.1:ENST00000696454.1:ENST00000696508.1:ENST00000696548.1:ENST00000696542.1:ENST00000696432.1:ENST00000696319.1:ENST00000403676.6:ENST00000696433.1:ENST00000696434.1:ENST00000696499.1:ENST00000696564.1:ENST00000402135.8:ENST00000696546.1:ENST00000233741.9:ENST00000696316.1:ENST00000696378.1:ENST00000696435.1:ENST00000696493.1:ENST00000696543.1:ENST00000696544.1:ENST00000696545.1:ENST00000696565.1:ENST00000696620.1:ENST00000696621.1:ENST00000696635.1:ENST00000696364.1:ENST00000696634.1:ENST00000696619.1:ENST00000696317.1:ENST00000696622.1:ENST00000696467.1:ENST00000696547.1:ENST00000449070.6:ENST00000696305.1:ENST00000417361.2:ENST00000696338.1:ENST00000696361.1:ENST00000696318.1:ENST00000696371.1:ENST00000696409.1:ENST00000696410.1:ENST00000696455.1:ENST00000696468.1:ENST00000696527.1:ENST00000696567.1:ENST00000696324.1:ENST00000696566.1:ENST00000696623.1:ENST00000446381.6:ENST00000696469.1:ENST00000696624.1:ENST00000696411.1:ENST00000696475.1:ENST00000470506.2:ENST00000696358.1:ENST00000696373.1:ENST00000696394.1:ENST00000696320.1:ENST00000696339.1:ENST00000696395.1:ENST00000696341.1:ENST00000696340.1:ENST00000696374.1:ENST00000696396.1:ENST00000696412.1:ENST00000696375.1:ENST00000696342.1:ENST00000696325.1:ENST00000696399.1:ENST00000696398.1:ENST00000696306.1:ENST00000696397.1:ENST00000696360.1:ENST00000696344.1:ENST00000696343.1:ENST00000696637.1:ENST00000696362.1:ENST00000696528.1:ENST00000696497.1:ENST00000696326.1:ENST00000696638.1:ENST00000696625.1:ENST00000696510.1:ENST00000696438.1:ENST00000696496.1:ENST00000696509.1:ENST00000696569.1:ENST00000696457.1:ENST00000696458.1:ENST00000696473.1:ENST00000696495.1:ENST00000696415.1:ENST00000696472.1:ENST00000696494.1:ENST00000696363.1:ENST00000696414.1:ENST00000696529.1:ENST00000696471.1:ENST00000696459.1:ENST00000696498.1:ENST00000696532.1:ENST00000696416.1:ENST00000696530.1:ENST00000696460.1:ENST00000696570.1:ENST00000696531.1:ENST00000696307.1:ENST00000696401.1:ENST00000696345.1:ENST00000696377.1:ENST00000696417.1:ENST00000696594.1:ENST00000696595.1:ENST00000696379.1:ENST00000696346.1:ENST00000696380.1:ENST00000696347.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	37	2	4.21964	4.685535	5.15143	0.0167715	0.00166579	0.110511	0.0369207
chr1	235271046	235271146	663291	0	-	0.46	(0.44,0.476]	chr1	78552	99	INTRON	INTRON	ARID4B	ENSG00000054267.22	ENST00000349213.7:ENST00000366603.6:ENST00000264183.9:ENST00000421364.5:ENST00000491632.5:ENST00000418304.1:ENST00000466653.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	37	2	4.12843	4.68527	5.24211	0.0337192	4.87398e-4	0.134145	0.0199652
chr2	10124028	10124117	690724	0	+	0.438202	(0.408,0.44]	chr2	81058	3	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	RRM2	ENSG00000171848.16	ENST00000641198.1:ENST00000360566.6:ENST00000459969.5:ENST00000652660.1:ENST00000641498.1:ENST00000304567.10:ENST00000491447.1:ENST00000615152.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	40	2	3.97679	4.684995	5.3932	0.0299485	7.81492e-4	0.142135	0.0257168
chr16	89519977	89520042	6420457	0	+	0.538462	(0.515,0.57]	chr16	616213	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA:INTRON	SPG7	ENSG00000197912.16	ENST00000647079.1:ENST00000646303.1:ENST00000643649.1:ENST00000643307.1:ENST00000566371.6:ENST00000644498.1:ENST00000645897.1:ENST00000643668.1:ENST00000644225.1:ENST00000645818.2:ENST00000645977.1:ENST00000645063.1:ENST00000646263.1:ENST00000643724.1:ENST00000644781.1:ENST00000644901.1:ENST00000645042.1:ENST00000646531.1:ENST00000646930.1:ENST00000642436.1:ENST00000644210.1:ENST00000564047.2:ENST00000646589.1:ENST00000268704.7:ENST00000646826.1:ENST00000646716.1:ENST00000643345.1:ENST00000341316.6:ENST00000645533.1:ENST00000646958.1:ENST00000642371.1:ENST00000643105.1:ENST00000645354.1:ENST00000643957.1:ENST00000642334.1:ENST00000647227.1:ENST00000562775.2:ENST00000568151.1:ENST00000646445.1:ENST00000564409.2:ENST00000643954.1:ENST00000646399.1:ENST00000644671.1:ENST00000643178.1:ENST00000611189.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	33	2	4.59914	4.68449	4.76984	0.00616166	0.00198034	0.0676501	0.0411469
chr17	49295739	49295838	6791879	0	-	0.545455	(0.515,0.57]	chr17	670140	67	UTR3	UTR3:EXON_MRNA:INTRON	ZNF652	ENSG00000198740.9	ENST00000430262.3:ENST00000508237.5:ENST00000362063.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	33	2	4.59914	4.68449	4.76984	0.00616166	0.00198034	0.0676501	0.0411469
chr2	231798261	231798358	1032900	0	+	0.536082	(0.515,0.57]	chr2	110351	16	INTRON	INTRON	COPS7B	ENSG00000144524.18	ENST00000611614.4:ENST00000410024.5:ENST00000409295.5:ENST00000409091.5:ENST00000620578.4:ENST00000413197.5:ENST00000412591.5:ENST00000350033.8:ENST00000412922.6:ENST00000410017.5:ENST00000373608.7:ENST00000461350.5:ENST00000474042.5:ENST00000488111.1:ENST00000449174.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	33	2	4.59914	4.68449	4.76984	0.00616166	0.00198034	0.0676501	0.0411469
chr1	202370624	202370724	292978	0	+	0.52	(0.515,0.57]	chr1	33758	211	INTRON	INTRON	PPP1R12B	ENSG00000077157.22	ENST00000391959.5:ENST00000608999.6:ENST00000480184.5:ENST00000356764.6:ENST00000476364.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	33	2	4.6831	4.68439	4.68568	0.00471288	0.00270027	0.0600108	0.0479115
chr3	179354797	179354895	1567000	0	+	0.520408	(0.515,0.57]	chr3	162075	24	INTRON	INTRON	MFN1	ENSG00000171109.19	ENST00000471841.6:ENST00000357390.8:ENST00000467174.6:ENST00000263969.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	33	2	4.6831	4.68439	4.68568	0.00471288	0.00270027	0.0600108	0.0479115
chr5	134910866	134910966	2491771	0	+	0.56	(0.515,0.57]	chr5	238087	4	SS5_PROX	SS5_PROX:INTRON	PCBD2	ENSG00000132570.15	ENST00000512783.5:ENST00000254908.11:ENST00000504352.1:ENST00000510013.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	33	2	4.6831	4.68439	4.68568	0.00471288	0.00270027	0.0600108	0.0479115
chr6	20807228	20807328	2831117	0	+	0.53	(0.515,0.57]	chr6	265673	256	INTRON	INTRON	CDKAL1	ENSG00000145996.11	ENST00000274695.8:ENST00000378610.1	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.6831	4.68439	4.68568	0.00471288	0.00270027	0.0600108	0.0479115
chr3	185801464	185801564	1886113	0	-	0.38	(0.378,0.408]	chr3	188573	1028	INTRON	INTRON	IGF2BP2	ENSG00000073792.16	ENST00000382199.7:ENST00000346192.7:ENST00000457616.6:ENST00000421047.3:ENST00000461957.5:ENST00000493302.5:ENST00000466476.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	36	2	4.31699	4.683949999999999	5.05091	0.0250408	0.00118558	0.12011	0.031662
chr1	187094145	187094245	278253	0	+	0.46	(0.44,0.476]	chr1	32518	8	INTRON	INTRON	LINC01036	ENSG00000230426.5	ENST00000643891.1:ENST00000609113.2:ENST00000657376.1:ENST00000670356.1:ENST00000645691.1:ENST00000458683.1	lncRNA	lncRNA	lncRNA	lncRNA	0	37	2	4.22393	4.683854999999999	5.14378	0.0162322	0.00184943	0.109464	0.0388609
chr10	68725476	68725576	4442308	0	+	0.26	[0,0.28]	chr10	409595	25	INTRON	INTRON	CCAR1	ENSG00000060339.14	ENST00000536391.5:ENST00000630771.2:ENST00000538031.5:ENST00000543719.5:ENST00000541012.5:ENST00000265872.11:ENST00000539539.5:ENST00000543229.5:ENST00000536012.5:ENST00000543225.5:ENST00000494903.2:ENST00000540210.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	134	2	2.69869	4.68346	6.66823	0.00643225	4.16067e-6	0.0697113	0.0013576
chr2	191689266	191689366	960479	0	+	0.29	(0.28,0.32]	chr2	104307	36	UTR3	UTR3:EXON_MRNA	NABP1	ENSG00000173559.15	ENST00000674262.1:ENST00000674360.1:ENST00000674406.1:ENST00000674414.1:ENST00000410026.7:ENST00000674172.1:ENST00000674187.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	94	2	3.83283	4.683425	5.53402	5.10252e-4	4.0843e-4	0.020816	0.0181306
chr1	35981131	35981229	71651	0	+	0.326531	(0.32,0.35]	chr1	9158	73	INTRON	INTRON	AGO3	ENSG00000126070.20	ENST00000324350.9:ENST00000397828.3:ENST00000634486.1:ENST00000373191.9:ENST00000246314.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	37	2	4.36755	4.6833849999999995	4.99922	0.0300552	0.00223907	0.129138	0.0435144
chr22	17891184	17891284	7549322	0	-	0.33	(0.32,0.35]	chr22	771689	3	SS5_PROX	SS5_PROX:INTRON	MICAL3	ENSG00000243156.9	ENST00000441493.7:ENST00000672019.1:ENST00000400561.6:ENST00000495076.5:ENST00000414725.6:ENST00000383094.7:ENST00000461307.5:ENST00000585038.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	37	2	4.36755	4.6833849999999995	4.99922	0.0300552	0.00223907	0.129138	0.0435144
chr6	110763784	110763884	3189940	0	-	0.35	(0.32,0.35]	chr6	297121	172	INTRON	INTRON	CDK19	ENSG00000155111.15	ENST00000323817.7:ENST00000368911.8:ENST00000413605.6:ENST00000457688.5:ENST00000460913.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	37	2	4.36755	4.6833849999999995	4.99922	0.0300552	0.00223907	0.129138	0.0435144
chr8	30799855	30799955	3933021	0	-	0.33	(0.32,0.35]	chr8	360325	1	SS3_PROX	SS3_PROX:INTRON	PPP2CB	ENSG00000104695.13	ENST00000221138.9:ENST00000518564.1:ENST00000518243.5:ENST00000520056.1:ENST00000520500.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	37	2	4.36755	4.6833849999999995	4.99922	0.0300552	0.00223907	0.129138	0.0435144
chr1	27796711	27796811	54745	0	+	0.51	(0.476,0.515]	chr1	7062	27	INTRON	INTRON	STX12	ENSG00000117758.14	ENST00000373943.9:ENST00000440806.2:ENST00000468761.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	35	2	4.44128	4.683285	4.92529	0.0151924	0.00180221	0.0994339	0.0392772
chr11	77987698	77987798	4997156	0	-	0.5	(0.476,0.515]	chr11	472218	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	INTS4	ENSG00000149262.18	ENST00000695303.1:ENST00000695096.1:ENST00000695097.1:ENST00000695099.1:ENST00000695100.1:ENST00000695101.1:ENST00000695102.1:ENST00000695098.1:ENST00000525931.2:ENST00000695310.1:ENST00000524766.6:ENST00000695306.1:ENST00000695307.1:ENST00000695308.1:ENST00000695309.1:ENST00000695305.1:ENST00000695103.1:ENST00000695316.1:ENST00000695315.1:ENST00000433818.6:ENST00000534064.6:ENST00000535943.2:ENST00000695104.1:ENST00000695317.1:ENST00000695105.1:ENST00000529807.5:ENST00000695320.1:ENST00000534408.5:ENST00000695321.1:ENST00000527522.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	35	2	4.44128	4.683285	4.92529	0.0151924	0.00180221	0.0994339	0.0392772
chr11	82910421	82910519	4839933	0	+	0.408163	(0.378,0.408]	chr11	451412	7	INTRON	INTRON	DDIAS	ENSG00000165490.13	ENST00000532277.5:ENST00000525361.5:ENST00000528759.5:ENST00000524921.5:ENST00000532764.5:ENST00000533655.6:ENST00000528189.5:ENST00000532589.5:ENST00000525388.5:ENST00000528262.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	36	2	4.42349	4.682995	4.9425	0.00992961	0.00452675	0.0877296	0.0595107
chr20	10569110	10569210	7241218	0	+	0.4	(0.378,0.408]	chr20	735181	79	INTRON	INTRON	SLX4IP	ENSG00000149346.15	ENST00000334534.10	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.42349	4.682995	4.9425	0.00992961	0.00452675	0.0877296	0.0595107
chr9	33122504	33122604	4243578	0	-	0.4	(0.378,0.408]	chr9	390110	15	INTRON	INTRON	B4GALT1	ENSG00000086062.13	ENST00000535206.5:ENST00000379731.5	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.42349	4.682995	4.9425	0.00992961	0.00452675	0.0877296	0.0595107
chr15	42516250	42516350	6009815	0	+	0.49	(0.476,0.515]	chr15	572172	5	INTRON	INTRON	SNAP23	ENSG00000092531.10	ENST00000561526.5:ENST00000568451.5:ENST00000563765.5:ENST00000349777.5:ENST00000249647.8:ENST00000564153.5:ENST00000567094.5:ENST00000566327.5:ENST00000568331.5:ENST00000566035.5:ENST00000568859.5:ENST00000568514.5:ENST00000397138.5:ENST00000563873.5:ENST00000563830.2:ENST00000568841.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	36	2	4.24501	4.682865	5.12072	0.0247713	8.42139e-4	0.12011	0.0263691
chr16	89555035	89555129	6420841	0	+	0.478723	(0.476,0.515]	chr16	616300	5	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	SPG7	ENSG00000197912.16	ENST00000647079.1:ENST00000646303.1:ENST00000643649.1:ENST00000644498.1:ENST00000645897.1:ENST00000643668.1:ENST00000644225.1:ENST00000645818.2:ENST00000645977.1:ENST00000645063.1:ENST00000646263.1:ENST00000643724.1:ENST00000644781.1:ENST00000644901.1:ENST00000645042.1:ENST00000646531.1:ENST00000646930.1:ENST00000644210.1:ENST00000646589.1:ENST00000268704.7:ENST00000646826.1:ENST00000646716.1:ENST00000643105.1:ENST00000642334.1:ENST00000647227.1:ENST00000646445.1:ENST00000643954.1:ENST00000646399.1:ENST00000644671.1:ENST00000643496.1:ENST00000647032.1:ENST00000644751.1:ENST00000645886.1:ENST00000644171.1:ENST00000645842.1:ENST00000642814.1:ENST00000643350.1:ENST00000645392.1:ENST00000647302.1:ENST00000647123.1:ENST00000643409.1:ENST00000642226.1:ENST00000646005.1:ENST00000642984.1:ENST00000647491.1:ENST00000645952.1:ENST00000569820.6:ENST00000645742.1:ENST00000644464.1:ENST00000561911.5:ENST00000561702.6:ENST00000647476.1:ENST00000644281.1:ENST00000569720.2:ENST00000565891.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	35	2	4.526	4.68281	4.83962	0.00699701	0.00480934	0.0754576	0.0602209
chr19	3059208	3059305	7117505	0	-	0.484536	(0.476,0.515]	chr19	715688	11	INTRON	INTRON	TLE5	ENSG00000104964.15	ENST00000221561.12:ENST00000327141.9:ENST00000586742.5:ENST00000592330.5:ENST00000586839.1:ENST00000585557.1:ENST00000585782.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	35	2	4.526	4.68281	4.83962	0.00699701	0.00480934	0.0754576	0.0602209
chr20	31716846	31716946	7325312	0	-	0.51	(0.476,0.515]	chr20	745996	319	INTRON	INTRON	BCL2L1	ENSG00000171552.14	ENST00000376055.9:ENST00000376062.6:ENST00000307677.5:ENST00000420488.6:ENST00000439267.2:ENST00000678563.1:ENST00000456404.6:ENST00000676942.1:ENST00000676582.1:ENST00000434194.2:ENST00000677194.1:ENST00000678671.1:ENST00000677494.1:ENST00000422920.2:ENST00000450273.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	35	2	4.526	4.68281	4.83962	0.00699701	0.00480934	0.0754576	0.0602209
chr17	30885902	30886000	6590984	0	+	0.336735	(0.32,0.35]	chr17	641016	61	INTRON	INTRON	ATAD5	ENSG00000176208.9	ENST00000321990.5	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	4.46758	4.68263	4.89768	0.0119306	0.00793135	0.0962115	0.076155
chrX	120556064	120556160	7877035	0	-	0.333333	(0.32,0.35]	chrX	802263	6	INTRON	INTRON	CUL4B	ENSG00000158290.19	ENST00000680673.1:ENST00000681253.1:ENST00000679927.1:ENST00000371322.11:ENST00000681189.1:ENST00000681080.1:ENST00000680918.1:ENST00000336592.11:ENST00000681333.1:ENST00000679405.1:ENST00000371323.3:ENST00000681206.1:ENST00000680577.1:ENST00000680324.1:ENST00000674137.11:ENST00000680165.1:ENST00000673919.1:ENST00000681090.1:ENST00000674073.2:ENST00000679844.1:ENST00000681908.1:ENST00000681652.1:ENST00000679432.1:ENST00000680474.1:ENST00000404115.8:ENST00000681869.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:non_stop_decay:nonsense_mediated_decay	0	37	2	4.46758	4.68263	4.89768	0.0119306	0.00793135	0.0962115	0.076155
chr8	9005489	9005588	3695583	0	+	0.424242	(0.408,0.44]	chr8	342900	8	INTRON	INTRON	ERI1	ENSG00000104626.15	ENST00000519292.5:ENST00000521844.1:ENST00000250263.8:ENST00000520684.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	72	2	3.79534	4.682535	5.56973	3.81714e-4	2.17043e-4	0.0181283	0.0129235
chr11	78410752	78410851	5000317	0	-	0.292929	(0.28,0.32]	chr11	472472	463	INTRON	INTRON	GAB2	ENSG00000033327.13	ENST00000361507.5:ENST00000526030.1:ENST00000528886.5:ENST00000530915.1:ENST00000534823.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	38	2	4.33765	4.682155	5.02666	0.039714	0.0027935	0.143072	0.0488769
chr15	50439774	50439872	6022372	0	+	0.306122	(0.28,0.32]	chr15	573944	2	INTRON	INTRON	USP8	ENSG00000138592.14	ENST00000560297.5:ENST00000396444.7:ENST00000560954.5:ENST00000425032.7:ENST00000558892.1:ENST00000307179.9:ENST00000559329.5:ENST00000560885.5:ENST00000560730.5:ENST00000625664.2:ENST00000560982.5:ENST00000561211.5:ENST00000558091.5:ENST00000559242.5:ENST00000561330.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:nonsense_mediated_decay:processed_transcript	0	38	2	4.33765	4.682155	5.02666	0.039714	0.0027935	0.143072	0.0488769
chr6	104855431	104855529	3172455	0	-	0.285714	(0.28,0.32]	chr6	295945	27	INTRON	INTRON	HACE1	ENSG00000085382.12	ENST00000262903.9:ENST00000416605.6:ENST00000369125.6:ENST00000519645.5:ENST00000524020.1:ENST00000521962.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	38	2	4.33765	4.682155	5.02666	0.039714	0.0027935	0.143072	0.0488769
chr1	21697313	21697413	395975	0	-	0.42	(0.408,0.44]	chr1	47217	17	INTRON	INTRON	USP48	ENSG00000090686.16	ENST00000400301.5:ENST00000308271.14:ENST00000374732.7:ENST00000529637.5:ENST00000464577.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	73	2	3.97074	4.68197	5.3932	7.81492e-4	8.66152e-5	0.0257168	0.00783027
chr1	174258866	174258965	258109	0	+	0.50505	(0.476,0.515]	chr1	30773	59	INTRON	INTRON	RABGAP1L	ENSG00000152061.24	ENST00000357444.10:ENST00000251507.8:ENST00000681986.1:ENST00000457696.1	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.32915	4.681905	5.03466	0.0124637	0.00252065	0.0973643	0.0446195
chr16	1613549	1613647	6274530	0	+	0.489796	(0.476,0.515]	chr16	599378	5	INTRON	INTRON	CRAMP1	ENSG00000007545.16	ENST00000674071.1:ENST00000397412.8	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.32915	4.681905	5.03466	0.0124637	0.00252065	0.0973643	0.0446195
chr16	90205400	90205500	6424947	0	+	0.48	(0.476,0.515]	chr16	617268	108	INTRON	INTRON	LINC02193	ENSG00000260923.7	ENST00000568418.1:ENST00000656587.1:ENST00000668099.1:ENST00000569162.2:ENST00000665776.1:ENST00000669853.1:ENST00000668039.1:ENST00000658135.1:ENST00000663101.1:ENST00000663757.1:ENST00000568947.2	lncRNA	lncRNA	lncRNA	lncRNA	0	36	2	4.32915	4.681905	5.03466	0.0124637	0.00252065	0.0973643	0.0446195
chr19	52212185	52212261	7094487	0	+	0.5	(0.476,0.515]	chr19	711194	1	SS3_PROX	SS3_PROX:INTRON	PPP2R1A	ENSG00000105568.18	ENST00000454220.6:ENST00000322088.11:ENST00000462990.5:ENST00000473455.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	36	2	4.32915	4.681905	5.03466	0.0124637	0.00252065	0.0973643	0.0446195
chr3	47835006	47835105	1420299	0	+	0.50505	(0.476,0.515]	chr3	149238	40	INTRON	INTRON	DHX30	ENSG00000132153.15	ENST00000395745.6:ENST00000445061.6:ENST00000441384.5:ENST00000348968.8:ENST00000446256.6:ENST00000619982.4:ENST00000457607.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	36	2	4.32915	4.681905	5.03466	0.0124637	0.00252065	0.0973643	0.0446195
chr5	62531481	62531579	2364220	0	+	0.510204	(0.476,0.515]	chr5	227979	3	INTRON	INTRON	IPO11	ENSG00000086200.17	ENST00000424533.5:ENST00000325324.11:ENST00000409296.7:ENST00000511713.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	36	2	4.32915	4.681905	5.03466	0.0124637	0.00252065	0.0973643	0.0446195
chr7	132961124	132961224	3644674	0	-	0.51	(0.476,0.515]	chr7	338848	738	INTRON	INTRON	CHCHD3	ENSG00000106554.13	ENST00000262570.10:ENST00000448878.6:ENST00000496427.5:ENST00000423635.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	36	2	4.32915	4.681905	5.03466	0.0124637	0.00252065	0.0973643	0.0446195
chr15	99637868	99637968	6114871	0	+	0.59	(0.57,1]	chr15	582076	43	INTRON	INTRON	MEF2A	ENSG00000068305.18	ENST00000560493.5:ENST00000354410.9:ENST00000558812.5:ENST00000558856.5:ENST00000685785.1:ENST00000559036.5:ENST00000557785.5:ENST00000558983.5:ENST00000557942.6:ENST00000338042.11:ENST00000558049.5:ENST00000449277.6:ENST00000690055.1:ENST00000691492.1:ENST00000686611.1:ENST00000559903.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	27	2	4.56365	4.68188	4.80011	0.00129848	6.07135e-4	0.0333764	0.0226059
chr4	39766770	39766870	1953681	0	+	0.58	(0.57,1]	chr4	195650	56	INTRON	INTRON	UBE2K	ENSG00000078140.14	ENST00000510934.5:ENST00000261427.10:ENST00000438068.6:ENST00000513231.5:ENST00000503368.5:ENST00000445950.2:ENST00000510719.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	27	2	4.56365	4.68188	4.80011	0.00129848	6.07135e-4	0.0333764	0.0226059
chr9	130108616	130108713	4211516	0	+	0.57732000000000006	(0.57,1]	chr9	386069	7	INTRON	INTRON	GPR107	ENSG00000148358.20	ENST00000372406.5:ENST00000372410.7:ENST00000347136.11:ENST00000493417.5:ENST00000610997.1:ENST00000483935.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	27	2	4.56365	4.68188	4.80011	0.00129848	6.07135e-4	0.0333764	0.0226059
chr19	16649044	16649142	7150674	0	-	0.44898	(0.44,0.476]	chr19	722447	14	INTRON	INTRON	SMIM7	ENSG00000214046.9	ENST00000465250.6:ENST00000481671.6:ENST00000594662.5:ENST00000597781.5:ENST00000598278.5:ENST00000593409.5:ENST00000487803.5:ENST00000627144.2:ENST00000487416.7:ENST00000593404.5:ENST00000597711.5:ENST00000599310.5:ENST00000397349.6:ENST00000602194.5:ENST00000600740.5:ENST00000461488.5:ENST00000463051.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	35	2	4.43377	4.681725	4.92968	0.0162803	0.00171443	0.101453	0.0381936
chr12	69242191	69242290	5163523	0	+	0.282828	(0.28,0.32]	chr12	488988	21	INTRON	INTRON	CPSF6	ENSG00000111605.18	ENST00000435070.7:ENST00000550075.5:ENST00000650046.1:ENST00000456847.7:ENST00000266679.8:ENST00000550987.5:ENST00000551516.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	38	2	4.4334	4.681345	4.92929	0.0163355	0.0098607	0.109464	0.0838128
chr3	33615143	33615242	1652961	0	-	0.30303	(0.28,0.32]	chr3	169611	27	INTRON	INTRON	CLASP2	ENSG00000163539.18	ENST00000399362.8:ENST00000682230.1:ENST00000468888.6:ENST00000359576.9:ENST00000650653.1:ENST00000480013.6:ENST00000461133.8:ENST00000635664.1:ENST00000313350.10:ENST00000487200.5:ENST00000333778.10:ENST00000485378.6	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.4334	4.681345	4.92929	0.0163355	0.0098607	0.109464	0.0838128
chr12	119840108	119840207	5431899	0	-	0.454545	(0.44,0.476]	chr12	518998	55	INTRON	INTRON	CIT	ENSG00000122966.17	ENST00000392521.7:ENST00000261833.11:ENST00000612548.4:ENST00000536325.1	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.23755	4.6813400000000005	5.12513	0.0263357	7.96486e-4	0.122221	0.0258804
chr5	179887404	179887503	2780594	0	-	0.464646	(0.44,0.476]	chr5	262556	25	INTRON	INTRON	TBC1D9B	ENSG00000197226.13	ENST00000356834.7:ENST00000355235.8:ENST00000524222.2:ENST00000522029.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	35	2	4.53034	4.6811799999999995	4.83202	0.00672609	0.00525002	0.0738715	0.0633615
chr5	181295249	181295322	2563657	0	+	0.493151	(0.476,0.515]	chr5	245345	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ENSG00000274525	ENSG00000274525.1	ENST00000622195.1	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	4	133	2	2.59672	4.680925	6.76513	6.3664e-4	5.85597e-7	0.0228285	4.48872e-4
chr12	131930535	131930635	5250014	0	+	0.42	(0.408,0.44]	chr12	499247	4	SS5_PROX	SS5_PROX:INTRON	PUS1	ENSG00000177192.14	ENST00000443358.6:ENST00000322060.9:ENST00000376649.8:ENST00000542167.2:ENST00000538037.5:ENST00000544662.1:ENST00000456665.6:ENST00000544213.5:ENST00000535067.5:ENST00000537484.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	83	2	4.06379	4.68079	5.29779	3.80479e-4	9.31794e-5	0.0176313	0.00857086
chr16	50217863	50217963	6348198	0	+	0.42	(0.408,0.44]	chr16	609335	2	SS5_PROX	SS5_PROX:INTRON	TENT4B	ENSG00000121274.14	ENST00000436909.8:ENST00000561678.7:ENST00000562717.1:ENST00000357464.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	37	2	4.22447	4.680745	5.13702	0.0161655	0.00202889	0.109464	0.04086
chr6	87517365	87517462	3151876	0	-	0.42268	(0.408,0.44]	chr6	293971	6	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	RARS2	ENSG00000146282.19	ENST00000691533.1:ENST00000493269.2:ENST00000497828.2:ENST00000685069.1:ENST00000691725.1:ENST00000369536.10:ENST00000693431.1:ENST00000688808.1:ENST00000685408.1:ENST00000693327.1:ENST00000691205.1:ENST00000689174.1:ENST00000692684.1:ENST00000686988.1:ENST00000690622.1:ENST00000689206.1:ENST00000688532.1:ENST00000686154.1:ENST00000686407.1:ENST00000685701.1:ENST00000689561.1:ENST00000689594.1:ENST00000691238.1:ENST00000685336.1:ENST00000686284.1:ENST00000687586.1:ENST00000685376.1:ENST00000691634.1:ENST00000685881.1:ENST00000691815.1:ENST00000687090.1:ENST00000451155.2:ENST00000687437.1:ENST00000692394.1:ENST00000687729.1:ENST00000693605.1:ENST00000687909.1:ENST00000688391.1:ENST00000690884.1:ENST00000692843.1:ENST00000684790.1:ENST00000692270.1:ENST00000685219.1:ENST00000689952.1:ENST00000687579.1:ENST00000686857.1:ENST00000690205.1:ENST00000690705.1:ENST00000686371.1:ENST00000686142.1:ENST00000688106.1:ENST00000686196.1:ENST00000688842.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	37	2	4.22447	4.680745	5.13702	0.0161655	0.00202889	0.109464	0.04086
chr19	38849599	38849699	7180845	0	-	0.63	(0.57,1]	chr19	725902	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	HNRNPL	ENSG00000104824.18	ENST00000221419.10:ENST00000388749.7:ENST00000601449.5:ENST00000600873.5:ENST00000598985.5:ENST00000601047.5:ENST00000601813.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	119	2	4.61285	4.6805699999999995	4.74829	1.22349e-7	3.85472e-9	1.58108e-4	1.4297e-5
chr7	11102696	11102795	3283901	0	+	0.30303	(0.28,0.32]	chr7	304993	3	UTR3	UTR3:EXON_MRNA:INTRON	PHF14	ENSG00000106443.17	ENST00000642461.1:ENST00000634607.2:ENST00000403050.7:ENST00000423760.6:ENST00000481418.5:ENST00000470665.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	196	2	4.60868	4.680515	4.75235	1.35506e-5	1.8148e-6	0.00291218	8.16846e-4
chr1	32786175	32786268	415843	0	-	0.354839	(0.35,0.378]	chr1	50175	2	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	YARS1	ENSG00000134684.13	ENST00000373477.9:ENST00000676297.1:ENST00000674654.1:ENST00000674629.1:ENST00000675785.2:ENST00000478828.1:ENST00000481895.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	101	2	3.42942	4.680445	5.93147	1.32665e-4	1.04286e-4	0.0104884	0.00863456
chr13	98568494	98568594	5643707	0	-	0.5	(0.476,0.515]	chr13	537505	466	INTRON	INTRON	STK24	ENSG00000102572.15	ENST00000539966.6:ENST00000397517.6:ENST00000491878.5:ENST00000481288.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	38	2	4.10113	4.68029	5.25945	0.0226984	0.00111445	0.124921	0.0306328
chr14	34854261	34854360	5868233	0	-	0.474747	(0.44,0.476]	chr14	557409	252	INTRON	INTRON	BAZ1A	ENSG00000198604.11	ENST00000358716.8:ENST00000360310.6:ENST00000382422.6:ENST00000553573.1:ENST00000553853.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	36	2	4.33346	4.680244999999999	5.02703	0.0120349	0.00278015	0.0962115	0.0469265
chr15	30925291	30925390	5994132	0	+	0.474747	(0.44,0.476]	chr15	569882	1	EXON_MRNA	EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	FAN1	ENSG00000198690.10	ENST00000667837.1:ENST00000656435.1:ENST00000654056.1:ENST00000657391.1:ENST00000568145.6:ENST00000670849.1:ENST00000655421.1:ENST00000664070.1:ENST00000664837.1:ENST00000670074.1:ENST00000565280.5:ENST00000656307.1:ENST00000362065.9:ENST00000602886.2:ENST00000661974.1:ENST00000562881.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	36	2	4.33346	4.680244999999999	5.02703	0.0120349	0.00278015	0.0962115	0.0469265
chr1	213176099	213176199	311957	0	+	0.25	[0,0.28]	chr1	35952	3	SS3_PROX	SS3_PROX:INTRON	RPS6KC1	ENSG00000136643.12	ENST00000615329.4:ENST00000543354.5:ENST00000614059.4:ENST00000543470.5:ENST00000366960.8:ENST00000366959.4:ENST00000490299.5:ENST00000468069.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	39	2	4.38387	4.68003	4.97619	0.0501911	0.00535756	0.156383	0.0663076
chr1	243307488	243307586	345388	0	+	0.27551	[0,0.28]	chr1	40234	1	SS3_PROX	SS3_PROX:INTRON	SDCCAG8	ENSG00000054282.16	ENST00000366541.8:ENST00000435549.1	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	4.38387	4.68003	4.97619	0.0501911	0.00535756	0.156383	0.0663076
chr10	48037260	48037357	4609498	0	-	0.257732	[0,0.28]	chr10	424699	7	EXON_LNCRNA	EXON_LNCRNA	ENSG00000289444	ENSG00000289444.1	ENST00000687180.1	lncRNA	lncRNA	lncRNA	lncRNA	0	39	2	4.38387	4.68003	4.97619	0.0501911	0.00535756	0.156383	0.0663076
chr2	214800915	214801015	1326101	0	-	0.22	[0,0.28]	chr2	138639	34	INTRON	INTRON	BARD1	ENSG00000138376.11	ENST00000260947.9:ENST00000617164.5:ENST00000619009.5:ENST00000613374.5:ENST00000613706.5:ENST00000421162.2:ENST00000613192.2:ENST00000620057.4:ENST00000455743.5:ENST00000471787.1:ENST00000479904.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	39	2	4.38387	4.68003	4.97619	0.0501911	0.00535756	0.156383	0.0663076
chr7	97154415	97154515	3357328	0	+	0.28	[0,0.28]	chr7	313218	112	INTRON	INTRON	SDHAF3	ENSG00000196636.8	ENST00000432641.3:ENST00000360382.4:ENST00000479853.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	39	2	4.38387	4.68003	4.97619	0.0501911	0.00535756	0.156383	0.0663076
chrX	12975877	12975973	7622120	0	+	0.395833	(0.378,0.408]	chrX	780223	9	UTR5	UTR5:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TMSB4X	ENSG00000205542.11	ENST00000380636.1:ENST00000451311.7:ENST00000380635.5:ENST00000380633.1	protein_coding	protein_coding	protein_coding	protein_coding	1	74	2	3.47377	4.6800049999999995	5.88624	0.00103087	1.19481e-4	0.0294094	0.00988798
chr16	75051481	75051581	6389944	0	+	0.56	(0.515,0.57]	chr16	614488	42	INTRON	INTRON	ZNRF1	ENSG00000186187.12	ENST00000335325.9:ENST00000320619.10:ENST00000567962.5:ENST00000566250.5:ENST00000564320.1:ENST00000568511.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	33	2	4.51	4.679679999999999	4.84936	0.00809449	0.00146032	0.0766625	0.0349875
chr3	138723391	138723491	1830377	0	-	0.57	(0.515,0.57]	chr3	184011	83	INTRON	INTRON	PIK3CB	ENSG00000051382.9	ENST00000674063.1:ENST00000289153.6:ENST00000477593.5:ENST00000462898.5:ENST00000462294.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	33	2	4.51	4.679679999999999	4.84936	0.00809449	0.00146032	0.0766625	0.0349875
chr7	4748785	4748884	3270581	0	+	0.535354	(0.515,0.57]	chr7	303890	74	INTRON	INTRON	FOXK1	ENSG00000164916.11	ENST00000328914.5:ENST00000460979.2	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.51	4.679679999999999	4.84936	0.00809449	0.00146032	0.0766625	0.0349875
chr1	246053868	246053968	676170	0	-	0.21	[0,0.28]	chr1	79717	4	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000391836.3:ENST00000464398.1:ENST00000453676.5:ENST00000462422.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	39	2	4.47254	4.679395	4.88625	0.020991	0.0173315	0.122348	0.104099
chr10	74323144	74323244	4457491	0	+	0.28	[0,0.28]	chr10	411559	80	INTRON	INTRON	ADK	ENSG00000156110.15	ENST00000672429.1:ENST00000539909.6:ENST00000286621.7:ENST00000673352.1:ENST00000673310.1:ENST00000672920.1:ENST00000672394.1:ENST00000372734.5:ENST00000673027.1:ENST00000541550.6:ENST00000672604.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	39	2	4.47254	4.679395	4.88625	0.020991	0.0173315	0.122348	0.104099
chr15	60459893	60459993	6195817	0	-	0.25	[0,0.28]	chr15	590445	27	INTRON	INTRON	ICE2	ENSG00000128915.12	ENST00000261520.9:ENST00000558181.5:ENST00000561114.5:ENST00000558512.5:ENST00000560895.5:ENST00000561446.5:ENST00000560668.5:ENST00000561087.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	39	2	4.47254	4.679395	4.88625	0.020991	0.0173315	0.122348	0.104099
chr16	72603091	72603191	6518696	0	-	0.27	[0,0.28]	chr16	631372	322	INTRON	INTRON	LINC01572	ENSG00000261008.8	ENST00000624829.4:ENST00000561611.2:ENST00000656218.1:ENST00000666555.2:ENST00000664155.1:ENST00000657725.1:ENST00000563770.5:ENST00000668081.1:ENST00000570152.2:ENST00000662171.1:ENST00000691892.1:ENST00000659470.1:ENST00000655530.1:ENST00000570035.5:ENST00000563823.6	lncRNA	lncRNA	lncRNA	lncRNA	0	39	2	4.47254	4.679395	4.88625	0.020991	0.0173315	0.122348	0.104099
chr1	161115853	161115953	573813	0	-	0.52	(0.515,0.57]	chr1	69586	131	INTRON	INTRON	PFDN2	ENSG00000143256.5	ENST00000468311.1:ENST00000368010.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	33	2	4.5963	4.6793700000000005	4.76244	0.00370287	0.00362147	0.0561162	0.0533855
chr21	5236916	5237015	7424817	0	-	0.545455	(0.515,0.57]	chr21	757417	36	INTRON	INTRON	ENSG00000279669	ENSG00000279669.1	ENST00000623753.1	lncRNA	lncRNA	lncRNA	lncRNA	0	33	2	4.5963	4.6793700000000005	4.76244	0.00370287	0.00362147	0.0561162	0.0533855
chr22	20622226	20622305	7557749	0	-	0.531646	(0.515,0.57]	chr22	772899	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SMPD4P1	ENSG00000223553.6	ENST00000416717.6:ENST00000443839.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	33	2	4.5963	4.6793700000000005	4.76244	0.00370287	0.00362147	0.0561162	0.0533855
chr10	35500203	35500303	4426147	0	+	0.38	(0.378,0.408]	chr10	407925	164	INTRON	INTRON	CCNY	ENSG00000108100.18	ENST00000374706.5:ENST00000490012.6:ENST00000493157.6:ENST00000374704.8:ENST00000265375.13:ENST00000339497.7:ENST00000492478.5:ENST00000470025.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	73	2	3.68517	4.679275	5.67338	3.90172e-4	3.05145e-4	0.0177751	0.0161236
chrX	12975781	12975877	7622119	0	+	0.552083	(0.515,0.57]	chrX	780223	8	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TMSB4X	ENSG00000205542.11	ENST00000380636.1:ENST00000451311.7:ENST00000380635.5:ENST00000380633.1	protein_coding	protein_coding	protein_coding	protein_coding	1	69	2	3.7003	4.67884	5.65738	3.73715e-4	3.32659e-5	0.0179087	0.00461719
chr7	149718435	149718534	3446227	0	+	0.30303	(0.28,0.32]	chr7	321525	27	INTRON	INTRON	KRBA1	ENSG00000133619.18	ENST00000486744.3:ENST00000496259.6:ENST00000319551.12	protein_coding	protein_coding	protein_coding	protein_coding	1	82	2	3.65016	4.678775	5.70739	8.32651e-4	6.39301e-4	0.0266389	0.0228666
chr19	1386417	1386517	6994986	0	+	0.42	(0.408,0.44]	chr19	693126	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	NDUFS7	ENSG00000115286.21	ENST00000546283.5:ENST00000545446.5:ENST00000543289.5:ENST00000539480.5:ENST00000538662.5:ENST00000313408.11:ENST00000436115.6:ENST00000233627.14:ENST00000534853.5:ENST00000546172.7:ENST00000414651.3:ENST00000538929.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	35	2	4.42713	4.678685	4.93024	0.0173083	0.00170369	0.104099	0.0381936
chr21	34115409	34115509	7401514	0	+	0.44	(0.408,0.44]	chr21	753975	93	INTRON	INTRON	MRPS6	ENSG00000243927.6	ENST00000488492.5:ENST00000477091.5:ENST00000399312.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	35	2	4.42713	4.678685	4.93024	0.0173083	0.00170369	0.104099	0.0381936
chr6	167947576	167947664	3035578	0	+	0.431818	(0.408,0.44]	chr6	282863	3	SS3_PROX	SS3_PROX:INTRON	AFDN	ENSG00000130396.21	ENST00000683244.1:ENST00000351017.9:ENST00000344191.8:ENST00000392112.5:ENST00000392108.7:ENST00000400822.7:ENST00000447894.6:ENST00000366809.6:ENST00000366806.6:ENST00000511637.5:ENST00000485634.7:ENST00000507679.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	35	2	4.42713	4.678685	4.93024	0.0173083	0.00170369	0.104099	0.0381936
chr12	45246767	45246867	5120321	0	+	0.52	(0.515,0.57]	chr12	483127	181	INTRON	INTRON	ANO6	ENSG00000177119.17	ENST00000426898.2:ENST00000425752.6:ENST00000423947.7:ENST00000320560.13:ENST00000680498.1:ENST00000550630.5:ENST00000680201.1:ENST00000681156.1:ENST00000679761.1:ENST00000680371.1:ENST00000681817.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	88	2	3.58288	4.6786449999999995	5.77441	4.92858e-5	2.88277e-5	0.00608708	0.00425384
chr11	74173517	74173617	4826543	0	+	0.37	(0.35,0.378]	chr11	450450	16	INTRON	INTRON	PPME1	ENSG00000214517.10	ENST00000542710.3:ENST00000328257.13:ENST00000398427.6:ENST00000544401.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	36	2	4.39303	4.678165	4.9633	0.0237246	0.00198929	0.118716	0.0411469
chr13	48304742	48304839	5484010	0	+	0.360825	(0.35,0.378]	chr13	525440	3	INTRON	INTRON	RB1	ENSG00000139687.16	ENST00000646097.1:ENST00000650461.1:ENST00000267163.6:ENST00000525036.1:ENST00000467505.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	36	2	4.39303	4.678165	4.9633	0.0237246	0.00198929	0.118716	0.0411469
chr15	52031768	52031867	6029148	0	+	0.363636	(0.35,0.378]	chr15	574427	35	INTRON	INTRON	MAPK6	ENSG00000069956.14	ENST00000560802.1:ENST00000691380.1:ENST00000558063.5:ENST00000560254.1:ENST00000681888.1:ENST00000261845.7:ENST00000680066.1:ENST00000680777.1:ENST00000558100.1:ENST00000680652.1:ENST00000558841.1:ENST00000558891.1:ENST00000560774.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	36	2	4.39303	4.678165	4.9633	0.0237246	0.00198929	0.118716	0.0411469
chr4	2538169	2538269	1912531	0	+	0.42	(0.408,0.44]	chr4	191976	6	INTRON	INTRON	RNF4:FAM193A	ENSG00000063978.16:ENSG00000125386.16	ENST00000508235.1:ENST00000637812.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	158	2	4.65099	4.678165	4.70534	3.60667e-6	9.57119e-7	0.0013551	5.54959e-4
chr2	189580623	189580704	1296581	0	-	0.419753	(0.408,0.44]	chr2	135734	3	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	SLC40A1	ENSG00000138449.11	ENST00000261024.7:ENST00000427241.5:ENST00000479598.5:ENST00000418714.1:ENST00000455320.5:ENST00000440626.1:ENST00000427419.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	35	2	4.53088	4.67809	4.8253	0.00669275	0.0056738	0.0738715	0.0653997
chr3	20175736	20175827	1640761	0	-	0.428571	(0.408,0.44]	chr3	168349	3	INTRON	INTRON	SGO1	ENSG00000129810.15	ENST00000306698.6:ENST00000419233.6:ENST00000263753.8:ENST00000425061.5:ENST00000443724.5:ENST00000421451.5:ENST00000452020.5:ENST00000442720.5:ENST00000412997.6:ENST00000437051.5:ENST00000417364.1:ENST00000456624.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	35	2	4.53088	4.67809	4.8253	0.00669275	0.0056738	0.0738715	0.0653997
chr3	42029514	42029614	1403817	0	+	0.44	(0.408,0.44]	chr3	147497	150	INTRON	INTRON	TRAK1	ENSG00000182606.17	ENST00000487159.5:ENST00000672026.1:ENST00000673621.2	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.53088	4.67809	4.8253	0.00669275	0.0056738	0.0738715	0.0653997
chr15	55195105	55195203	6180002	0	-	0.387755	(0.378,0.408]	chr15	589092	2	SS5_PROX	SS5_PROX:INTRON	RSL24D1	ENSG00000137876.11	ENST00000260443.9:ENST00000569386.2:ENST00000677147.1:ENST00000562895.2:ENST00000677989.1:ENST00000677730.1:ENST00000677092.1:ENST00000562993.5:ENST00000564344.5:ENST00000565854.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	35	2	4.58427	4.6776599999999995	4.77105	0.0128325	0.00330823	0.0926667	0.0527031
chr6	31496291	31496391	2842763	0	+	0.38	(0.378,0.408]	chr6	267484	9	INTRON	INTRON	MICB	ENSG00000204516.10	ENST00000538442.5	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.58427	4.6776599999999995	4.77105	0.0128325	0.00330823	0.0926667	0.0527031
chr11	85981407	85981486	5013940	0	-	0.493671	(0.476,0.515]	chr11	472928	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000530692.5:ENST00000630913.2:ENST00000529760.5:ENST00000528398.5:ENST00000532603.5:ENST00000356360.9:ENST00000529016.5:ENST00000526961.5:ENST00000530542.1:ENST00000534375.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	156	2	4.66316	4.67762	4.69208	2.88507e-6	1.09059e-6	0.00119813	5.99786e-4
chr2	70048388	70048487	1150858	0	-	0.40404	(0.378,0.408]	chr2	122864	12	INTRON	INTRON	PCBP1-AS1	ENSG00000179818.16	ENST00000419542.5:ENST00000682294.1:ENST00000684630.1:ENST00000630975.3:ENST00000435880.6:ENST00000629339.3:ENST00000667874.1:ENST00000628659.2:ENST00000628308.2:ENST00000626515.2:ENST00000625447.2:ENST00000628305.2:ENST00000625625.2:ENST00000625864.2:ENST00000630522.2:ENST00000628837.2:ENST00000627325.2:ENST00000629084.2:ENST00000629603.2:ENST00000625215.2:ENST00000627189.2:ENST00000629836.2:ENST00000626898.2:ENST00000628883.2:ENST00000629533.2:ENST00000627181.2:ENST00000630214.2:ENST00000627918.2:ENST00000628374.2:ENST00000627327.2:ENST00000626495.2:ENST00000629605.2:ENST00000626370.2:ENST00000626842.2:ENST00000630457.2:ENST00000629184.2:ENST00000628551.2:ENST00000630746.2:ENST00000627398.2:ENST00000457076.5:ENST00000625783.2:ENST00000625490.2:ENST00000627050.2:ENST00000630759.2:ENST00000628667.2:ENST00000626632.2:ENST00000631110.2:ENST00000626609.2:ENST00000629506.2:ENST00000630985.2:ENST00000413436.5:ENST00000628147.2:ENST00000631107.2:ENST00000629415.2:ENST00000418564.5:ENST00000630280.2:ENST00000415222.5:ENST00000628322.2:ENST00000626440.2:ENST00000665708.1:ENST00000655086.1:ENST00000420309.6:ENST00000627487.3:ENST00000670036.1:ENST00000655096.1:ENST00000685127.1:ENST00000684907.1:ENST00000685079.1:ENST00000687866.1:ENST00000692564.1:ENST00000686517.1:ENST00000689138.1:ENST00000688056.1:ENST00000594376.6:ENST00000692333.1:ENST00000688045.1:ENST00000657291.1:ENST00000691987.1:ENST00000664483.1:ENST00000601431.6:ENST00000685803.1:ENST00000690200.1:ENST00000686800.1:ENST00000684857.1:ENST00000627037.2:ENST00000629212.2:ENST00000688473.1:ENST00000456161.5:ENST00000627074.2:ENST00000419963.5:ENST00000625227.2:ENST00000599673.5:ENST00000629407.2:ENST00000418308.5:ENST00000630283.2:ENST00000629178.2:ENST00000627542.2:ENST00000626574.2:ENST00000596028.5:ENST00000629485.2:ENST00000630685.2:ENST00000452431.5:ENST00000629374.2:ENST00000423402.5:ENST00000411429.5:ENST00000629188.2:ENST00000434781.5:ENST00000626162.2:ENST00000654878.1:ENST00000659586.1:ENST00000457770.6:ENST00000415742.5:ENST00000627540.2:ENST00000628263.2:ENST00000657575.2:ENST00000689275.1:ENST00000687961.1:ENST00000416395.6:ENST00000692733.1:ENST00000654336.1:ENST00000686055.1:ENST00000626509.3:ENST00000425601.6:ENST00000653064.1:ENST00000656326.1:ENST00000668711.1:ENST00000665172.1:ENST00000630520.3:ENST00000663209.1:ENST00000659305.1:ENST00000654601.1:ENST00000663375.1:ENST00000654958.1:ENST00000665838.1:ENST00000653606.1:ENST00000659941.1:ENST00000669583.1:ENST00000660903.1:ENST00000653596.1:ENST00000656308.1:ENST00000449178.6:ENST00000625955.3:ENST00000655140.1:ENST00000661989.1:ENST00000664419.1:ENST00000670785.1:ENST00000664773.1:ENST00000661703.1:ENST00000658454.1:ENST00000664049.1:ENST00000655058.1:ENST00000366234.7:ENST00000599427.5:ENST00000597318.5:ENST00000625518.2:ENST00000425333.5:ENST00000429599.6:ENST00000432604.5:ENST00000421843.5:ENST00000458686.5:ENST00000421255.5:ENST00000413069.5:ENST00000685037.1:ENST00000458698.6:ENST00000670786.1:ENST00000657164.1:ENST00000665264.1:ENST00000603347.5:ENST00000604346.5	lncRNA	lncRNA	lncRNA	lncRNA	0	35	2	4.66338	4.677535000000001	4.69169	0.0103469	0.00432302	0.0850389	0.0599409
chr2	95112994	95113092	1177530	0	-	0.397959	(0.378,0.408]	chr2	125649	26	INTRON	INTRON	MRPS5	ENSG00000289685.1	ENST00000272418.7:ENST00000345084.10:ENST00000695437.1:ENST00000695436.1:ENST00000695435.1:ENST00000695434.1:ENST00000695433.1:ENST00000695432.1:ENST00000695439.1:ENST00000461916.6:ENST00000475895.6:ENST00000695440.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	35	2	4.66338	4.677535000000001	4.69169	0.0103469	0.00432302	0.0850389	0.0599409
chr11	119115828	119115926	4874678	0	+	0.377551	(0.35,0.378]	chr11	455619	16	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	C2CD2L	ENSG00000172375.14	ENST00000648610.2:ENST00000336702.7:ENST00000525598.1:ENST00000528586.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	36	2	4.49626	4.67748	4.8587	0.00917582	0.00695662	0.0855292	0.0718189
chr4	150793085	150793184	2269510	0	-	0.363636	(0.35,0.378]	chr4	220739	309	INTRON	INTRON	LRBA	ENSG00000198589.14	ENST00000357115.9:ENST00000651943.2:ENST00000510413.5:ENST00000509835.5:ENST00000651695.1:ENST00000651035.1:ENST00000507224.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	36	2	4.49626	4.67748	4.8587	0.00917582	0.00695662	0.0855292	0.0718189
chr14	100294061	100294158	5968321	0	-	0.42268	(0.408,0.44]	chr14	567017	8	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	SLC25A29	ENSG00000197119.13	ENST00000359232.8:ENST00000554912.1:ENST00000392908.7:ENST00000556505.5:ENST00000555927.5:ENST00000554224.5:ENST00000556715.6:ENST00000554291.5:ENST00000554060.1:ENST00000556868.1:ENST00000555475.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	36	2	4.334	4.67714	5.02028	0.011982	0.00303216	0.0962115	0.0493883
chr7	12347048	12347146	3484841	0	-	0.44898	(0.44,0.476]	chr7	325854	7	INTRON	INTRON	VWDE	ENSG00000146530.15	ENST00000275358.8:ENST00000452576.6:ENST00000521169.5:ENST00000649524.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	285	2	3.8187	4.67712	5.53554	2.20719e-7	9.28201e-9	2.23018e-4	2.61578e-5
chr1	35013545	35013638	420227	0	-	0.344086	(0.32,0.35]	chr1	50599	6	INTRON	INTRON	ENSG00000271741:ZMYM6	ENSG00000271741.1:ENSG00000163867.17	ENST00000487874.1:ENST00000357182.9:ENST00000493328.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	78	2	3.68775	4.676705	5.66566	6.06695e-4	4.66127e-4	0.0226059	0.0195589
chr11	74839920	74840020	4830073	0	+	0.24	[0,0.28]	chr11	450654	33	UTR3	UTR3:EXON_MRNA:INTRON	RNF169	ENSG00000166439.6	ENST00000299563.5:ENST00000527301.1	protein_coding	protein_coding	protein_coding	protein_coding	1	90	2	3.2621000000000002	4.675695	6.08929	0.00367113	4.45295e-4	0.056059199999999997	0.0194896
chr20	32447496	32447595	7325515	0	-	0.59596	(0.57,1]	chr20	746038	46	UTR3	UTR3:EXON_MRNA	NOL4L	ENSG00000197183.15	ENST00000621426.7:ENST00000359676.9	protein_coding	protein_coding	protein_coding	protein_coding	1	52	2	3.31859	4.675605	6.03262	0.00137292	3.89657e-7	0.0340241	3.48202e-4
chr3	168085251	168085351	1854833	0	-	0.37	(0.35,0.378]	chr3	186419	365	INTRON	INTRON	GOLIM4	ENSG00000173905.9	ENST00000470487.6:ENST00000309027.4	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.08816	4.6753350000000005	5.26251	0.046021	6.20882e-4	0.149888	0.0223951
chr12	104457729	104457829	5210691	0	+	0.48	(0.476,0.515]	chr12	493314	2	SS5_PROX	SS5_PROX:INTRON	CHST11	ENSG00000171310.11	ENST00000303694.6:ENST00000547956.1:ENST00000549260.5:ENST00000546689.1	protein_coding	protein_coding	protein_coding	protein_coding	1	73	2	3.99016	4.675055	5.35995	7.54256e-4	7.96444e-5	0.0251179	0.00742553
chr11	47544915	47545015	4950321	0	-	0.41	(0.408,0.44]	chr11	464246	203	INTRON	INTRON	CELF1	ENSG00000149187.19	ENST00000310513.10:ENST00000687097.1:ENST00000531165.5:ENST00000530151.5:ENST00000525841.5:ENST00000526419.1	protein_coding	protein_coding	protein_coding	protein_coding	5	145	2	2.65567	4.675025	6.69438	2.17278e-4	1.25828e-6	0.0129235	7.25792e-4
chr20	44974396	44974495	7278537	0	+	0.333333	(0.32,0.35]	chr20	740045	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	STK4	ENSG00000101109.12	ENST00000499879.6:ENST00000372806.8:ENST00000372801.5:ENST00000480745.5:ENST00000487587.2:ENST00000474717.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	38	2	4.17181	4.675015	5.17822	0.04531	0.00115625	0.149888	0.0313436
chr6	149330087	149330187	2994836	0	+	0.33	(0.32,0.35]	chr6	280212	83	INTRON	INTRON	TAB2	ENSG00000055208.19	ENST00000606202.1:ENST00000636456.1:ENST00000637181.2:ENST00000461481.5:ENST00000367456.5:ENST00000606797.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	38	2	4.17181	4.675015	5.17822	0.04531	0.00115625	0.149888	0.0313436
chr16	11736233	11736333	6445136	0	-	0.31	(0.28,0.32]	chr16	620835	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	TXNDC11	ENSG00000153066.13	ENST00000283033.10:ENST00000356957.7:ENST00000576969.5:ENST00000573174.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	37	2	4.58875	4.67453	4.76031	0.0230574	0.00656106	0.118056	0.0735539
chr17	59832116	59832216	6643652	0	+	0.32	(0.28,0.32]	chr17	648772	140	INTRON	INTRON	VMP1	ENSG00000062716.13	ENST00000262291.9:ENST00000592619.5:ENST00000591877.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	37	2	4.58875	4.67453	4.76031	0.0230574	0.00656106	0.118056	0.0735539
chr2	95146193	95146293	1177637	0	-	0.31	(0.28,0.32]	chr2	125669	13	UTR3	UTR3:EXON_MRNA	ZNF514	ENSG00000144026.13	ENST00000695481.1:ENST00000295208.7	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	4.58875	4.67453	4.76031	0.0230574	0.00656106	0.118056	0.0735539
chr3	197859083	197859172	1598416	0	+	0.303371	(0.28,0.32]	chr3	165648	3	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	LRCH3	ENSG00000186001.14	ENST00000438796.6:ENST00000428136.2:ENST00000425562.7:ENST00000441090.6:ENST00000414675.6:ENST00000334859.8:ENST00000461674.5:ENST00000452660.5:ENST00000433298.5:ENST00000481048.5:ENST00000466845.1:ENST00000471667.5:ENST00000483442.5:ENST00000473177.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	37	2	4.58875	4.67453	4.76031	0.0230574	0.00656106	0.118056	0.0735539
chr6	45166584	45166684	3101872	0	-	0.31	(0.28,0.32]	chr6	290476	602	INTRON	INTRON	SUPT3H	ENSG00000196284.17	ENST00000475057.5:ENST00000371459.6:ENST00000371460.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	37	2	4.58875	4.67453	4.76031	0.0230574	0.00656106	0.118056	0.0735539
chrX	24722654	24722754	7631979	0	+	0.32	(0.28,0.32]	chrX	781635	1	SS3_PROX	SS3_PROX:INTRON	POLA1	ENSG00000101868.13	ENST00000678847.1:ENST00000672178.1:ENST00000379068.8:ENST00000677890.1:ENST00000379059.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	37	2	4.58875	4.67453	4.76031	0.0230574	0.00656106	0.118056	0.0735539
chr1	114731403	114731503	528352	0	-	0.29	(0.28,0.32]	chr1	62287	1	EXON_MRNA	EXON_MRNA:INTRON	CSDE1	ENSG00000009307.17	ENST00000339438.10:ENST00000610726.5:ENST00000692719.1:ENST00000358528.9:ENST00000688211.1:ENST00000438362.7:ENST00000689217.1:ENST00000689989.1:ENST00000686025.1:ENST00000686781.1:ENST00000686123.1:ENST00000684913.1:ENST00000686235.1:ENST00000693467.1:ENST00000689732.1:ENST00000693644.1:ENST00000687759.1:ENST00000692044.1:ENST00000689885.1:ENST00000691403.1:ENST00000692629.1:ENST00000690013.1:ENST00000690420.1:ENST00000692950.1:ENST00000686667.1:ENST00000691032.1:ENST00000685676.1:ENST00000529046.6:ENST00000692672.1:ENST00000691377.1:ENST00000688611.1:ENST00000690207.1:ENST00000693311.1:ENST00000689510.1:ENST00000686581.1:ENST00000689727.1:ENST00000690784.1:ENST00000483030.2:ENST00000687548.1:ENST00000261443.9:ENST00000530886.5:ENST00000369530.5:ENST00000534699.5:ENST00000524652.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	37	2	4.66359	4.67443	4.68527	0.0193496	0.00819419	0.108861	0.0810802
chr18	51184845	51184944	6973889	0	-	0.292929	(0.28,0.32]	chr18	690175	69	INTRON	INTRON	MEX3C	ENSG00000176624.12	ENST00000406189.4:ENST00000591040.2	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	4.66359	4.67443	4.68527	0.0193496	0.00819419	0.108861	0.0810802
chr7	87835255	87835354	3565946	0	-	0.292929	(0.28,0.32]	chr7	332265	18	UTR3	UTR3:EXON_MRNA	SLC25A40	ENSG00000075303.13	ENST00000341119.10	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	4.66359	4.67443	4.68527	0.0193496	0.00819419	0.108861	0.0810802
chr3	5128784	5128884	1353640	0	+	0.25	[0,0.28]	chr3	142360	2	SS5_PROX	SS5_PROX:INTRON	ARL8B	ENSG00000134108.14	ENST00000429403.5:ENST00000256496.8:ENST00000455168.5:ENST00000444332.1:ENST00000419534.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	40	2	4.20106	4.674415	5.14777	0.0695895	0.00311898	0.184298	0.0512673
chr4	98898719	98898817	2208215	0	-	0.183673	[0,0.28]	chr4	216170	28	INTRON	INTRON	EIF4E	ENSG00000151247.13	ENST00000450253.7:ENST00000280892.10:ENST00000515638.5:ENST00000504432.5:ENST00000511644.5:ENST00000505992.1:ENST00000507665.5:ENST00000504472.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	40	2	4.20106	4.674415	5.14777	0.0695895	0.00311898	0.184298	0.0512673
chr11	33274146	33274246	4766789	0	+	0.37	(0.35,0.378]	chr11	440839	151	INTRON	INTRON	HIPK3	ENSG00000110422.12	ENST00000525975.5:ENST00000303296.9:ENST00000379016.7:ENST00000456517.2:ENST00000531504.5	protein_coding	protein_coding	protein_coding	protein_coding	1	75	2	3.77198	4.67381	5.57564	5.93654e-4	2.78147e-4	0.0225024	0.0148626
chr7	66142649	66142748	3324241	0	+	0.373737	(0.35,0.378]	chr7	309118	79	INTRON	INTRON	CRCP	ENSG00000241258.7	ENST00000360415.7:ENST00000431089.6:ENST00000398684.6:ENST00000395326.8:ENST00000338592.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	38	2	4.19022	4.673725	5.15723	0.0209891	0.00272706	0.122348	0.0467523
chr6	105002128	105002228	2930302	0	+	0.34	(0.32,0.35]	chr6	276110	435	INTRON	INTRON	LIN28B	ENSG00000187772.8	ENST00000635857.1:ENST00000637759.1:ENST00000345080.5	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.27113	4.67371	5.07629	0.0199982	0.00468114	0.120668	0.0600108
chr22	19817812	19817912	7555254	0	-	0.4	(0.378,0.408]	chr22	772431	50	INTRON	INTRON	GNB1L	ENSG00000185838.14	ENST00000329517.11:ENST00000403325.5:ENST00000405009.5:ENST00000460402.5:ENST00000481086.1:ENST00000453108.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	35	2	4.50056	4.673415	4.84627	0.015974	0.00254319	0.101453	0.0465056
chr17	31281128	31281228	6593053	0	+	0.4	(0.378,0.408]	chr17	641260	154	INTRON	INTRON	NF1	ENSG00000196712.20	ENST00000696138.1:ENST00000356175.7:ENST00000691014.1:ENST00000358273.9:ENST00000579081.5:ENST00000456735.6:ENST00000493220.5:ENST00000687863.1:ENST00000696140.1:ENST00000696141.1:ENST00000581113.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	35	2	4.60771	4.67305	4.73839	0.00837252	0.00567576	0.0774402	0.0678837
chr5	171886986	171887085	2771535	0	-	0.383838	(0.378,0.408]	chr5	260913	85	INTRON	INTRON	FBXW11	ENSG00000072803.18	ENST00000296933.10:ENST00000517395.6:ENST00000265094.9:ENST00000393802.6:ENST00000523843.5:ENST00000522891.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	35	2	4.60771	4.67305	4.73839	0.00837252	0.00567576	0.0774402	0.0678837
chr5	88218763	88218863	2669234	0	-	0.29	(0.28,0.32]	chr5	252658	112	INTRON	INTRON	TMEM161B	ENSG00000164180.14	ENST00000514135.5:ENST00000296595.11:ENST00000511087.5:ENST00000510089.5:ENST00000506536.5:ENST00000511218.5:ENST00000512429.5:ENST00000507872.1:ENST00000509387.5:ENST00000503755.5:ENST00000513487.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	82	2	3.47062	4.67243	5.87424	0.00137212	4.43011e-4	0.0340241	0.0194241
chr17	49676974	49677065	6793488	0	-	0.351648	(0.35,0.378]	chr17	670321	6	INTRON	INTRON	SPOP	ENSG00000121067.19	ENST00000393328.6:ENST00000504102.6:ENST00000347630.6:ENST00000665825.1:ENST00000514121.6:ENST00000509079.6:ENST00000513080.6:ENST00000505581.5:ENST00000506399.5:ENST00000507970.5:ENST00000515508.6:ENST00000504212.5:ENST00000508805.5:ENST00000451526.6:ENST00000502385.1:ENST00000509765.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	37	2	4.29961	4.672365	5.04512	0.0158483	0.00393262	0.109464	0.0548259
chr7	156883171	156883271	3687918	0	-	0.5	(0.476,0.515]	chr7	342096	459	INTRON	INTRON	LMBR1	ENSG00000105983.23	ENST00000353442.10:ENST00000415428.5:ENST00000454132.5:ENST00000434503.5:ENST00000430278.5:ENST00000434278.5:ENST00000444719.5:ENST00000461469.5:ENST00000414218.1:ENST00000434453.1:ENST00000498034.5:ENST00000433968.5:ENST00000485985.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	146	2	2.48997	4.67197	6.85397	5.57267e-4	3.35672e-7	0.021494	3.12932e-4
chr7	10643740	10643840	3483217	0	-	0.37	(0.35,0.378]	chr7	325772	818	INTRON	INTRON	MGC4859	ENSG00000283117.1	ENST00000634803.1	lncRNA	lncRNA	lncRNA	lncRNA	1	76	2	3.41139	4.67143	5.93147	0.00143263	1.32665e-4	0.0347139	0.0104884
chr16	81491954	81492054	6405469	0	+	0.41	(0.408,0.44]	chr16	615026	461	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8	protein_coding	protein_coding	protein_coding	protein_coding	2	95	2	3.28441	4.671375	6.05834	2.01433e-4	4.06336e-5	0.0124157	0.00539487
chr18	2663057	2663157	6864933	0	+	0.37	(0.35,0.378]	chr18	679940	64	INTRON	INTRON	SMCHD1	ENSG00000101596.17	ENST00000320876.11:ENST00000688342.1:ENST00000684915.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	142	2	3.20584	4.671355	6.13687	5.13037e-5	2.11423e-5	0.0062158	0.00355554
chr1	54395867	54395967	463656	0	-	0.59	(0.57,1]	chr1	55784	392	INTRON	INTRON	SSBP3	ENSG00000157216.16	ENST00000610401.5:ENST00000357475.9:ENST00000371319.8:ENST00000417664.7:ENST00000533946.6:ENST00000371320.8:ENST00000525990.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	49	2	3.80923	4.671025	5.53282	1.11529e-4	7.64124e-6	0.00945289	0.00197283
chr3	60266127	60266227	1712275	0	-	0.3	(0.28,0.32]	chr3	176138	1854	INTRON	INTRON	FHIT	ENSG00000189283.10	ENST00000492590.6:ENST00000476844.5:ENST00000468189.5:ENST00000488467.5	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	4.50981	4.67073	4.83165	0.0275554	0.00527257	0.123904	0.0656295
chr4	18000253	18000353	2118084	0	-	0.32	(0.28,0.32]	chr4	209157	270	INTRON	INTRON	LCORL	ENSG00000178177.17	ENST00000635767.2:ENST00000326877.8:ENST00000675131.1:ENST00000675143.1:ENST00000637787.1:ENST00000675605.1:ENST00000510451.5:ENST00000675927.1:ENST00000382224.5:ENST00000382226.5:ENST00000676061.1:ENST00000674942.1:ENST00000512376.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	37	2	4.50981	4.67073	4.83165	0.0275554	0.00527257	0.123904	0.0656295
chr9	37227715	37227815	4118734	0	+	0.29	(0.28,0.32]	chr9	375389	408	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000461038.5:ENST00000488607.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	37	2	4.50981	4.67073	4.83165	0.0275554	0.00527257	0.123904	0.0656295
chr2	175154153	175154253	1272201	0	-	0.35	(0.32,0.35]	chr2	134482	26	INTRON	INTRON	ATF2	ENSG00000115966.18	ENST00000345739.9:ENST00000426833.7:ENST00000264110.7:ENST00000409635.5:ENST00000428760.5:ENST00000392544.5:ENST00000417080.5:ENST00000456655.5:ENST00000421438.5:ENST00000429579.5:ENST00000415955.5:ENST00000409499.5:ENST00000435231.6:ENST00000437522.5:ENST00000409833.5:ENST00000413123.5:ENST00000445349.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	105	2	3.43629	4.67072	5.90515	2.30541e-4	1.14798e-4	0.013917	0.00917224
chr19	10175039	10175139	7134668	0	-	0.32	(0.28,0.32]	chr19	719215	1	SS5_PROX	SS5_PROX:INTRON	DNMT1	ENSG00000130816.17	ENST00000340748.8:ENST00000359526.9:ENST00000592705.5:ENST00000679103.1:ENST00000677634.1:ENST00000676820.1:ENST00000677250.1:ENST00000677013.1:ENST00000677685.1:ENST00000677616.1:ENST00000676604.1:ENST00000678024.1:ENST00000676610.1:ENST00000678804.1:ENST00000679313.1:ENST00000677946.1:ENST00000586988.5:ENST00000588952.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	37	2	4.6061	4.67042	4.73474	0.0162835	0.0102724	0.101453	0.089002
chr3	14946203	14946298	1619447	0	-	0.305263	(0.28,0.32]	chr3	167396	1	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	FGD5-AS1	ENSG00000225733.7	ENST00000430166.5:ENST00000424349.1:ENST00000655923.1:ENST00000665449.1:ENST00000665738.1:ENST00000661022.1:ENST00000417835.1:ENST00000426200.1:ENST00000440079.1:ENST00000687714.1:ENST00000693748.1	lncRNA	lncRNA	lncRNA	lncRNA	0	37	2	4.6061	4.67042	4.73474	0.0162835	0.0102724	0.101453	0.089002
chr7	38734687	38734787	3521174	0	-	0.31	(0.28,0.32]	chr7	328360	55	INTRON	INTRON	VPS41	ENSG00000006715.16	ENST00000310301.9:ENST00000395969.6:ENST00000448833.5:ENST00000482217.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	37	2	4.6061	4.67042	4.73474	0.0162835	0.0102724	0.101453	0.089002
chr4	17918730	17918830	2117260	0	-	0.3	(0.28,0.32]	chr4	209129	90	INTRON	INTRON	LCORL	ENSG00000178177.17	ENST00000635767.2:ENST00000326877.8:ENST00000675131.1:ENST00000675143.1:ENST00000637787.1:ENST00000675605.1:ENST00000510451.5:ENST00000510121.5:ENST00000675927.1:ENST00000382224.5:ENST00000382226.5:ENST00000676061.1:ENST00000674942.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	39	2	4.14214	4.67028	5.19842	0.0579756	0.00152333	0.167723	0.0360297
chr1	173831185	173831261	256443	0	+	0.5	(0.476,0.515]	chr1	30609	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DARS2	ENSG00000117593.12	ENST00000648807.1:ENST00000648960.1:ENST00000647788.1:ENST00000647730.1:ENST00000649067.1:ENST00000649689.2:ENST00000648271.1:ENST00000647645.1:ENST00000471476.2:ENST00000650297.1:ENST00000648458.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	35	2	4.34648	4.66995	4.99342	0.0193566	0.00139274	0.108861	0.0341261
chr17	81056877	81056977	6689468	0	+	0.5	(0.476,0.515]	chr17	653691	4	SS5_PROX	SS5_PROX:INTRON	BAIAP2	ENSG00000175866.16	ENST00000321280.11:ENST00000576470.5:ENST00000575750.5:ENST00000428708.7:ENST00000572329.5:ENST00000575989.5:ENST00000570913.5:ENST00000575712.5:ENST00000575245.5:ENST00000321300.10:ENST00000435091.7:ENST00000573894.5:ENST00000571530.5:ENST00000572918.5:ENST00000573017.5:ENST00000575958.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	35	2	4.34648	4.66995	4.99342	0.0193566	0.00139274	0.108861	0.0341261
chr18	46093665	46093765	6965455	0	-	0.51	(0.476,0.515]	chr18	689408	3	SS3_PROX	SS3_PROX:INTRON	ATP5F1A	ENSG00000152234.16	ENST00000398752.11:ENST00000282050.6:ENST00000593152.6:ENST00000586592.5:ENST00000590665.5:ENST00000590156.5:ENST00000592364.5:ENST00000589252.5:ENST00000589869.5:ENST00000590406.5:ENST00000590324.5:ENST00000590448.5:ENST00000592989.1:ENST00000591981.5:ENST00000585650.1:ENST00000591267.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	35	2	4.34648	4.66995	4.99342	0.0193566	0.00139274	0.108861	0.0341261
chr7	2291267	2291366	3467453	0	-	0.494949	(0.476,0.515]	chr7	324232	126	INTRON	INTRON	SNX8	ENSG00000106266.11	ENST00000222990.8:ENST00000435060.5:ENST00000457286.5:ENST00000435336.5:ENST00000494722.1:ENST00000447136.1:ENST00000419693.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	35	2	4.34648	4.66995	4.99342	0.0193566	0.00139274	0.108861	0.0341261
chr6	17641446	17641544	3065544	0	-	0.540816	(0.515,0.57]	chr6	284800	10	INTRON	INTRON	NUP153	ENSG00000124789.12	ENST00000613258.4:ENST00000537253.5:ENST00000262077.3	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.41498	4.669855	4.92473	0.0106866	0.00108255	0.0861859	0.0300133
chrX	70290150	70290242	7675302	0	+	0.521739	(0.515,0.57]	chrX	785560	1	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	KIF4A	ENSG00000090889.12	ENST00000374403.4:ENST00000485406.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	33	2	4.41498	4.669855	4.92473	0.0106866	0.00108255	0.0861859	0.0300133
chrX	71402338	71402438	7678603	0	+	0.52	(0.515,0.57]	chrX	786253	2	INTRON	INTRON	TAF1	ENSG00000147133.17	ENST00000683202.1:ENST00000373790.9:ENST00000423759.6:ENST00000683782.1:ENST00000683668.1:ENST00000276072.9:ENST00000483985.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	33	2	4.41498	4.669855	4.92473	0.0106866	0.00108255	0.0861859	0.0300133
chr15	50359536	50359636	6022086	0	+	0.49	(0.476,0.515]	chr15	573922	47	EXON_LNCRNA	EXON_LNCRNA:INTRON	GABPB1-AS1	ENSG00000244879.9	ENST00000668321.1:ENST00000499624.3:ENST00000648591.1:ENST00000558593.1	lncRNA	lncRNA	lncRNA	lncRNA	2	95	2	3.20821	4.6696	6.13099	3.05489e-4	2.19436e-5	0.0155972	0.00381314
chr12	111987466	111987566	5414305	0	-	0.41	(0.408,0.44]	chr12	517083	83	INTRON	INTRON	TMEM116	ENSG00000198270.13	ENST00000550831.7:ENST00000552374.7:ENST00000355445.7:ENST00000547878.6:ENST00000549537.6:ENST00000552801.6:ENST00000548283.6:ENST00000550800.6:ENST00000550037.5:ENST00000551297.6:ENST00000550020.6:ENST00000546537.6:ENST00000549425.5:ENST00000552839.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	81	2	3.00595	4.66952	6.33309	0.00781452	1.45384e-6	0.0759016	7.22593e-4
chr16	89420336	89420424	6542897	0	-	0.534091	(0.515,0.57]	chr16	634268	4	EXON_LNCRNA	EXON_LNCRNA:INTRON	ANKRD11:ENSG00000261692	ENSG00000167522.17:ENSG00000261692.1	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1:ENST00000567166.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA:processed_transcript	0	33	2	4.50102	4.66933	4.83764	0.00510768	0.00279527	0.0646039	0.0469265
chr19	18519120	18519220	7152985	0	-	0.55	(0.515,0.57]	chr19	722886	433	INTRON	INTRON	ELL	ENSG00000105656.13	ENST00000262809.9:ENST00000594635.6:ENST00000596915.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	33	2	4.50102	4.66933	4.83764	0.00510768	0.00279527	0.0646039	0.0469265
chr9	91814795	91814895	4283910	0	-	0.56	(0.515,0.57]	chr9	393909	386	INTRON	INTRON	ROR2	ENSG00000169071.15	ENST00000375715.5:ENST00000375708.4:ENST00000550066.5:ENST00000495386.5:ENST00000546883.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	33	2	4.50102	4.66933	4.83764	0.00510768	0.00279527	0.0646039	0.0469265
chr1	207341578	207341678	303475	0	+	0.34	(0.32,0.35]	chr1	34926	6	INTRON	INTRON	CD55	ENSG00000196352.18	ENST00000695822.1:ENST00000695823.1:ENST00000695826.1:ENST00000695825.1:ENST00000695827.1:ENST00000645323.1:ENST00000391921.9:ENST00000367064.9:ENST00000314754.12:ENST00000644836.1:ENST00000476590.1:ENST00000465534.5:ENST00000618707.2:ENST00000635614.2:ENST00000695831.1:ENST00000634386.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	36	2	4.61889	4.669295	4.7197	0.0166646	0.00568521	0.102621	0.0678837
chr4	70988366	70988465	1971372	0	+	0.333333	(0.32,0.35]	chr4	197612	3	INTRON	INTRON	MOB1B	ENSG00000173542.9	ENST00000511449.1	protein_coding	processed_transcript	protein_coding	processed_transcript	0	36	2	4.61889	4.669295	4.7197	0.0166646	0.00568521	0.102621	0.0678837
chr5	109738782	109738882	2449502	0	+	0.33	(0.32,0.35]	chr5	234602	89	INTRON	INTRON	MAN2A1	ENSG00000112893.10	ENST00000261483.5	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.61889	4.669295	4.7197	0.0166646	0.00568521	0.102621	0.0678837
chr6	35631930	35632030	3086947	0	-	0.34	(0.32,0.35]	chr6	288775	113	INTRON	INTRON	FKBP5	ENSG00000096060.15	ENST00000536438.5:ENST00000539068.5:ENST00000357266.9:ENST00000542713.1	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.61889	4.669295	4.7197	0.0166646	0.00568521	0.102621	0.0678837
chr12	132101299	132101399	5250357	0	+	0.49	(0.476,0.515]	chr12	499298	94	INTRON	INTRON	EP400P1	ENSG00000185684.16	ENST00000407361.8:ENST00000446190.5:ENST00000690966.1:ENST00000689047.1:ENST00000454179.7:ENST00000689533.1:ENST00000688036.1:ENST00000688136.1:ENST00000488030.5:ENST00000389560.6:ENST00000689403.1:ENST00000443539.6:ENST00000392352.5:ENST00000539205.5:ENST00000332441.7	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	35	2	4.43093	4.66927	4.90761	0.00931369	0.00386428	0.0855292	0.0542786
chr19	32404590	32404690	7168792	0	-	0.48	(0.476,0.515]	chr19	724318	2	SS5_PROX	SS5_PROX:INTRON	DPY19L3-DT	ENSG00000267213.4	ENST00000592680.2	lncRNA	lncRNA	lncRNA	lncRNA	0	35	2	4.43093	4.66927	4.90761	0.00931369	0.00386428	0.0855292	0.0542786
chr2	168704526	168704626	904646	0	+	0.48	(0.476,0.515]	chr2	99790	91	INTRON	INTRON	CERS6	ENSG00000172292.15	ENST00000392687.4:ENST00000305747.11	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.43093	4.66927	4.90761	0.00931369	0.00386428	0.0855292	0.0542786
chr22	46791141	46791238	7535472	0	+	0.505155	(0.476,0.515]	chr22	770560	13	INTRON	INTRON	TBC1D22A	ENSG00000054611.14	ENST00000380995.5:ENST00000337137.9:ENST00000441936.5:ENST00000486163.5:ENST00000407381.7:ENST00000355704.7:ENST00000394449.6:ENST00000496139.5:ENST00000472791.5:ENST00000441162.5:ENST00000406733.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	35	2	4.43093	4.66927	4.90761	0.00931369	0.00386428	0.0855292	0.0542786
chr8	48016769	48016869	3752320	0	+	0.48	(0.476,0.515]	chr8	349044	78	INTRON	INTRON	UBE2V2	ENSG00000169139.12	ENST00000523432.5:ENST00000521346.5:ENST00000523111.7:ENST00000518360.5:ENST00000517630.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	35	2	4.43093	4.66927	4.90761	0.00931369	0.00386428	0.0855292	0.0542786
chr9	136444551	136444651	4374619	0	-	0.5	(0.476,0.515]	chr9	402949	1	SS5_PROX	SS5_PROX:INTRON	SEC16A	ENSG00000148396.19	ENST00000290037.10:ENST00000313050.11:ENST00000371706.8:ENST00000453963.5:ENST00000277537.10:ENST00000313084.9:ENST00000684901.1:ENST00000689049.1:ENST00000689439.1:ENST00000688461.1:ENST00000688052.1:ENST00000690691.1:ENST00000431893.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	35	2	4.43093	4.66927	4.90761	0.00931369	0.00386428	0.0855292	0.0542786
chrX	123659550	123659650	7878310	0	-	0.39	(0.378,0.408]	chrX	802527	138	INTRON	INTRON	THOC2	ENSG00000125676.20	ENST00000245838.13:ENST00000355725.8:ENST00000491737.5	protein_coding	protein_coding	protein_coding	protein_coding	2	97	2	3.41888	4.668865	5.91885	1.02858e-4	1.00827e-4	0.00915589	0.00847812
chr3	52687616	52687686	1429199	0	+	0.385714	(0.378,0.408]	chr3	150980	1	EXON_MRNA	EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GNL3	ENSG00000163938.17	ENST00000479230.5:ENST00000468146.5:ENST00000394799.6:ENST00000418458.6:ENST00000492349.5:ENST00000462550.5:ENST00000496254.5:ENST00000460073.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	116	2	2.95379	4.66864	6.38349	2.62263e-4	1.0203e-5	0.0143317	0.00248543
chr4	32078870	32078970	1942237	0	+	0.33	(0.32,0.35]	chr4	194727	807	INTRON	INTRON	LINC02506	ENSG00000251129.3	ENST00000662669.1:ENST00000665582.2:ENST00000667252.2:ENST00000660373.2:ENST00000684849.1:ENST00000513211.2:ENST00000659613.1:ENST00000657576.1:ENST00000686730.1:ENST00000685407.1:ENST00000685455.1:ENST00000655951.1	lncRNA	lncRNA	lncRNA	lncRNA	1	80	2	4.00463	4.668405	5.33218	0.00204346	9.86358e-5	0.04086	0.00835539
chr4	102801253	102801353	2213086	0	-	0.29	(0.28,0.32]	chr4	216735	4	SS5_PROX	SS5_PROX:INTRON	UBE2D3	ENSG00000109332.20	ENST00000453744.7:ENST00000394804.6:ENST00000618836.4:ENST00000394803.9:ENST00000394801.8:ENST00000343106.9:ENST00000508474.5:ENST00000503742.5:ENST00000321805.11:ENST00000350435.11:ENST00000338145.7:ENST00000349311.12:ENST00000504211.5:ENST00000505009.5:ENST00000357194.10:ENST00000505207.5:ENST00000507845.5:ENST00000502404.5:ENST00000508635.5:ENST00000505307.5:ENST00000510129.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	40	2	4.03345	4.66799	5.30253	0.0704058	0.0010319	0.184298	0.0294094
chr19	40606705	40606784	7069559	0	+	0.455696	(0.44,0.476]	chr19	706315	2	SS5_PROX	SS5_PROX:INTRON	LTBP4	ENSG00000090006.18	ENST00000204005.13:ENST00000308370.11:ENST00000598717.5:ENST00000396819.8:ENST00000595529.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	35	2	4.43525	4.667625	4.9	0.00897296	0.00423315	0.0849778	0.0572185
chr22	40348831	40348928	7519814	0	+	0.463918	(0.44,0.476]	chr22	768244	3	EXON_LNCRNA	EXON_LNCRNA:INTRON	ADSL	ENSG00000239900.14	ENST00000623632.4:ENST00000679723.1:ENST00000623063.3:ENST00000637666.2:ENST00000680978.1:ENST00000625194.4:ENST00000681159.1:ENST00000342312.9:ENST00000636714.1:ENST00000680444.1:ENST00000480775.3:ENST00000624503.1:ENST00000466863.1:ENST00000637669.1:ENST00000216194.11:ENST00000675622.1:ENST00000679656.1:ENST00000636265.1:ENST00000623978.3:ENST00000477111.2:ENST00000623287.4:ENST00000679609.1:ENST00000624474.1:ENST00000680378.1:ENST00000636124.1:ENST00000638161.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	35	2	4.43525	4.667625	4.9	0.00897296	0.00423315	0.0849778	0.0572185
chr1	6533179	6533279	367904	0	-	0.44	(0.408,0.44]	chr1	43205	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NOL9	ENSG00000162408.11	ENST00000377705.6:ENST00000464383.1:ENST00000462798.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	78	2	3.78937	4.66749	5.54561	3.51772e-4	1.20601e-4	0.0174637	0.00938389
chr12	132794348	132794446	5449859	0	-	0.622449	(0.57,1]	chr12	522042	27	INTRON	INTRON	GOLGA3	ENSG00000090615.16	ENST00000204726.9:ENST00000450791.8:ENST00000693666.1:ENST00000688114.1:ENST00000687190.1:ENST00000690511.1:ENST00000685283.1:ENST00000691696.1:ENST00000691636.1:ENST00000690897.1:ENST00000690465.1:ENST00000456883.7:ENST00000692253.1:ENST00000687502.1:ENST00000688772.1:ENST00000687479.1:ENST00000690709.1:ENST00000545875.4:ENST00000688251.1:ENST00000690573.1:ENST00000685195.1:ENST00000686425.1:ENST00000693437.1:ENST00000692831.1:ENST00000688068.1:ENST00000692951.1:ENST00000689441.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	27	2	4.37136	4.66736	4.96336	0.00345135	2.05554e-4	0.0517761	0.0124557
chr16	89761448	89761548	6544229	0	-	0.35	(0.32,0.35]	chr16	634451	1	SS5_PROX	SS5_PROX:INTRON	FANCA	ENSG00000187741.16	ENST00000561667.2:ENST00000389301.8:ENST00000568369.6:ENST00000564475.6:ENST00000696275.1:ENST00000696287.1:ENST00000696286.1:ENST00000696274.1:ENST00000567510.2:ENST00000696291.1:ENST00000305699.15:ENST00000567988.5:ENST00000561660.1:ENST00000563510.5:ENST00000563318.1:ENST00000696276.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	36	2	4.53988	4.66735	4.79482	0.0202178	0.00447781	0.109913	0.0610799
chr2	159268710	159268810	1249318	0	-	0.34	(0.32,0.35]	chr2	132474	85	INTRON	INTRON	WDSUB1	ENSG00000196151.11	ENST00000359774.9:ENST00000358147.8:ENST00000409990.7:ENST00000392796.7:ENST00000409124.1	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.53988	4.66735	4.79482	0.0202178	0.00447781	0.109913	0.0610799
chr2	174230450	174230550	1270674	0	-	0.34	(0.32,0.35]	chr2	134298	6	INTRON	INTRON	OLA1	ENSG00000138430.16	ENST00000284719.8:ENST00000344357.9:ENST00000428402.6:ENST00000409546.5:ENST00000427472.2	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.53988	4.66735	4.79482	0.0202178	0.00447781	0.109913	0.0610799
chr2	229918273	229918373	1341628	0	-	0.34	(0.32,0.35]	chr2	140468	88	INTRON	INTRON	TRIP12	ENSG00000153827.14	ENST00000675453.1:ENST00000675903.1:ENST00000283943.9:ENST00000675423.1:ENST00000389044.8:ENST00000389045.7:ENST00000479037.5:ENST00000409677.5:ENST00000435716.5:ENST00000428959.5:ENST00000430954.5:ENST00000343290.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	36	2	4.53988	4.66735	4.79482	0.0202178	0.00447781	0.109913	0.0610799
chr22	47862883	47862982	7541696	0	+	0.323232	(0.32,0.35]	chr22	770797	10	EXON_LNCRNA	EXON_LNCRNA:INTRON	ENSG00000224271	ENSG00000224271.7	ENST00000664761.1:ENST00000650683.1:ENST00000651536.1:ENST00000651445.1:ENST00000650660.1:ENST00000651056.1:ENST00000652399.1:ENST00000652123.1:ENST00000652030.2:ENST00000651403.1:ENST00000652228.1:ENST00000651124.1:ENST00000651003.1:ENST00000651948.2:ENST00000651939.1:ENST00000651638.1:ENST00000670853.1:ENST00000652080.1:ENST00000651294.1:ENST00000651538.1:ENST00000651033.1:ENST00000651584.1:ENST00000449941.2	lncRNA	lncRNA	lncRNA	lncRNA	0	36	2	4.53988	4.66735	4.79482	0.0202178	0.00447781	0.109913	0.0610799
chr3	43466324	43466424	1673877	0	-	0.35	(0.32,0.35]	chr3	170972	332	INTRON	INTRON	ANO10	ENSG00000160746.13	ENST00000292246.8:ENST00000350459.8:ENST00000396091.7:ENST00000414522.6:ENST00000451430.6:ENST00000448045.1	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.53988	4.66735	4.79482	0.0202178	0.00447781	0.109913	0.0610799
chr8	73671985	73672084	3970165	0	-	0.343434	(0.32,0.35]	chr8	364137	25	INTRON	INTRON	STAU2	ENSG00000040341.18	ENST00000524300.6:ENST00000522695.5:ENST00000523558.5:ENST00000521210.5:ENST00000355780.9:ENST00000519961.5:ENST00000521727.5:ENST00000521451.5:ENST00000522509.5:ENST00000517542.5:ENST00000518981.5:ENST00000518767.5:ENST00000518502.5:ENST00000521293.5:ENST00000521447.5:ENST00000524104.5:ENST00000522962.5:ENST00000521419.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	36	2	4.53988	4.66735	4.79482	0.0202178	0.00447781	0.109913	0.0610799
chr14	63516235	63516335	5907634	0	-	0.35	(0.32,0.35]	chr14	561136	81	INTRON	INTRON	PPP2R5E	ENSG00000154001.14	ENST00000337537.8:ENST00000555899.1:ENST00000553266.5:ENST00000556878.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	37	2	4.273	4.6671949999999995	5.06139	0.0368357	0.00179023	0.138959	0.0392749
chr18	9153540	9153640	6869098	0	+	0.33	(0.32,0.35]	chr18	680561	153	INTRON	INTRON	ANKRD12	ENSG00000101745.17	ENST00000585234.5:ENST00000262126.9:ENST00000577992.1:ENST00000540578.6:ENST00000581635.5:ENST00000400020.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	37	2	4.273	4.6671949999999995	5.06139	0.0368357	0.00179023	0.138959	0.0392749
chr10	74321244	74321344	4457472	0	+	0.37	(0.35,0.378]	chr10	411559	61	INTRON	INTRON	ADK	ENSG00000156110.15	ENST00000672429.1:ENST00000539909.6:ENST00000286621.7:ENST00000673352.1:ENST00000673310.1:ENST00000672920.1:ENST00000672394.1:ENST00000372734.5:ENST00000673027.1:ENST00000541550.6:ENST00000672604.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	84	2	3.87042	4.66718	5.46394	2.9524e-4	2.60035e-4	0.0159581	0.014326
chr10	74638686	74638786	4460657	0	+	0.34	(0.32,0.35]	chr10	411605	378	INTRON	INTRON	ADK	ENSG00000156110.15	ENST00000672429.1:ENST00000539909.6:ENST00000286621.7:ENST00000673352.1:ENST00000673310.1:ENST00000672920.1:ENST00000672394.1:ENST00000372734.5:ENST00000673027.1:ENST00000541550.6:ENST00000672604.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	36	2	4.64046	4.66713	4.6938	0.0137794	0.00724767	0.0949306	0.0756327
chr14	102635110	102635210	5822958	0	+	0.33	(0.32,0.35]	chr14	552490	414	INTRON	INTRON	RCOR1	ENSG00000089902.10	ENST00000262241.7	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.64046	4.66713	4.6938	0.0137794	0.00724767	0.0949306	0.0756327
chr21	9330241	9330339	7367433	0	+	0.459184	(0.44,0.476]	chr21	751920	26	INTRON	INTRON	ENSG00000278932	ENSG00000278932.5	ENST00000622961.3:ENST00000686553.1:ENST00000691955.1:ENST00000625153.3:ENST00000692626.1:ENST00000685951.1:ENST00000686510.1:ENST00000692884.1	lncRNA	lncRNA	lncRNA	lncRNA	1	76	2	3.39322	4.667035	5.94085	0.00187283	1.53199e-5	0.0390476	0.00293868
chr12	113364250	113364349	5232400	0	+	0.585859	(0.57,1]	chr12	496272	50	INTRON	INTRON	PLBD2	ENSG00000151176.8	ENST00000545182.6:ENST00000280800.5:ENST00000548997.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	27	2	4.44366	4.66682	4.88998	0.00210922	4.016e-4	0.0425419	0.0185763
chr19	2352157	2352253	6997410	0	+	0.614583	(0.57,1]	chr19	693760	1	INTRON	INTRON	SPPL2B	ENSG00000005206.17	ENST00000613503.5:ENST00000610743.4:ENST00000589515.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	27	2	4.44366	4.66682	4.88998	0.00210922	4.016e-4	0.0425419	0.0185763
chr22	24285699	24285799	7487033	0	+	0.59	(0.57,1]	chr22	763984	85	INTRON	INTRON	SPECC1L	ENSG00000100014.20	ENST00000437398.5:ENST00000421374.5:ENST00000314328.14:ENST00000651059.1:ENST00000541492.1:ENST00000416735.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	27	2	4.44366	4.66682	4.88998	0.00210922	4.016e-4	0.0425419	0.0185763
chr1	39451797	39451883	78486	0	+	0.290698	(0.28,0.32]	chr1	10163	2	SS3_PROX	SS3_PROX:INTRON	MACF1	ENSG00000127603.32	ENST00000361689.7:ENST00000567887.5:ENST00000372915.8:ENST00000564288.6:ENST00000671089.2:ENST00000372925.6:ENST00000289893.8:ENST00000686067.1:ENST00000687997.1:ENST00000683517.1:ENST00000691623.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	83	2	3.30893	4.66636	6.02379	0.00260504	2.44054e-4	0.0470772	0.0144024
chr6	89767292	89767391	3161497	0	-	0.343434	(0.32,0.35]	chr6	294808	44	INTRON	INTRON	MDN1	ENSG00000112159.12	ENST00000369393.8:ENST00000629399.2:ENST00000439638.1	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	4.37269	4.6662	4.95971	0.0154102	0.00663522	0.108569	0.0703181
chr22	29290315	29290412	7496289	0	+	0.340206	(0.32,0.35]	chr22	764836	14	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	EWSR1	ENSG00000182944.18	ENST00000629659.2:ENST00000332050.10:ENST00000397938.7:ENST00000406548.5:ENST00000331029.11:ENST00000483415.5:ENST00000414183.6:ENST00000333395.10:ENST00000332035.10:ENST00000479135.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	199	2	2.40737	4.66594	6.92451	2.8781e-4	1.56562e-6	0.0150627	8.28276e-4
chr12	123358517	123358617	5445145	0	-	0.54	(0.515,0.57]	chr12	521118	77	INTRON	INTRON	SBNO1	ENSG00000139697.14	ENST00000602398.3:ENST00000267176.8	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.28921	4.66573	5.04225	0.00990051	0.00131841	0.0877296	0.0331539
chr16	85092064	85092163	6411500	0	+	0.545455	(0.515,0.57]	chr16	615446	39	UTR3	UTR3:EXON_MRNA	KIAA0513	ENSG00000135709.14	ENST00000538274.6:ENST00000683363.1:ENST00000566428.5	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.28921	4.66573	5.04225	0.00990051	0.00131841	0.0877296	0.0331539
chr17	42464553	42464651	6611344	0	+	0.530612	(0.515,0.57]	chr17	644074	32	INTRON	INTRON	ATP6V0A1	ENSG00000033627.17	ENST00000393829.6:ENST00000588629.1:ENST00000343619.9:ENST00000537728.5:ENST00000588901.5:ENST00000264649.10:ENST00000585525.5:ENST00000544137.5:ENST00000589727.5:ENST00000587824.5:ENST00000589213.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	34	2	4.28921	4.66573	5.04225	0.00990051	0.00131841	0.0877296	0.0331539
chr8	9022649	9022748	3695762	0	+	0.424242	(0.408,0.44]	chr8	342937	18	INTRON	INTRON	ERI1	ENSG00000104626.15	ENST00000519292.5:ENST00000250263.8:ENST00000520332.5:ENST00000518663.1:ENST00000522612.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	73	2	4.03533	4.665725	5.29612	0.00113523	6.08082e-5	0.0307488	0.00644153
chr4	126470740	126470840	2235416	0	-	0.19	[0,0.28]	chr4	219023	52	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	0	39	2	4.29536	4.66552	5.03568	0.0590175	0.00446141	0.167915	0.0610799
chr1	224948878	224948978	322544	0	+	0.28	[0,0.28]	chr1	37105	187	INTRON	INTRON	DNAH14	ENSG00000185842.16	ENST00000445597.6:ENST00000430092.5:ENST00000366850.7:ENST00000400952.7:ENST00000682510.1:ENST00000366849.5:ENST00000498360.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	38	2	4.62084	4.665505	4.71017	0.0313633	0.0114708	0.13151	0.0956037
chr19	2760515	2760568	7116521	0	-	0.150943	[0,0.28]	chr19	715464	2	INTRON	INTRON	SGTA	ENSG00000104969.11	ENST00000221566.7:ENST00000678109.1:ENST00000676984.1:ENST00000677513.1:ENST00000676943.1:ENST00000677731.1:ENST00000679138.1:ENST00000677562.1:ENST00000678595.1:ENST00000677754.1:ENST00000677149.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	38	2	4.62084	4.665505	4.71017	0.0313633	0.0114708	0.13151	0.0956037
chr22	27902476	27902576	7565700	0	-	0.27	[0,0.28]	chr22	774128	42	INTRON	INTRON	PITPNB	ENSG00000180957.19	ENST00000335272.10:ENST00000320996.14:ENST00000634017.1:ENST00000415296.5:ENST00000436663.1:ENST00000460566.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	38	2	4.62084	4.665505	4.71017	0.0313633	0.0114708	0.13151	0.0956037
chr4	152534140	152534240	2275071	0	-	0.26	[0,0.28]	chr4	221128	29	INTRON	INTRON	FBXW7	ENSG00000109670.16	ENST00000281708.10:ENST00000603548.6:ENST00000604872.6:ENST00000647166.1:ENST00000643834.1:ENST00000642901.1:ENST00000604095.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	38	2	4.62084	4.665505	4.71017	0.0313633	0.0114708	0.13151	0.0956037
chr5	37318781	37318879	2602224	0	-	0.265306	[0,0.28]	chr5	247417	3	INTRON	INTRON	NUP155	ENSG00000113569.16	ENST00000231498.8:ENST00000381843.6:ENST00000513532.1	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.62084	4.665505	4.71017	0.0313633	0.0114708	0.13151	0.0956037
chr6	170630531	170630631	3037757	0	+	0.18	[0,0.28]	chr6	283177	28	INTRON	INTRON	ENSG00000287411:ENSG00000230423	ENSG00000287411.1:ENSG00000230423.3	ENST00000667394.1:ENST00000656791.1:ENST00000426839.2	lncRNA	lncRNA	lncRNA	lncRNA	0	38	2	4.62084	4.665505	4.71017	0.0313633	0.0114708	0.13151	0.0956037
chr7	27624971	27625071	3510560	0	-	0.24	[0,0.28]	chr7	327330	815	INTRON	INTRON	HIBADH	ENSG00000106049.9	ENST00000265395.7:ENST00000428288.2:ENST00000425715.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	38	2	4.62084	4.665505	4.71017	0.0313633	0.0114708	0.13151	0.0956037
chr7	50320195	50320295	3316857	0	+	0.16	[0,0.28]	chr7	308256	7	INTRON	INTRON	IKZF1	ENSG00000185811.20	ENST00000642219.1:ENST00000645066.1:ENST00000484847.6:ENST00000646110.1:ENST00000331340.8:ENST00000413698.5:ENST00000349824.8:ENST00000343574.9:ENST00000357364.8:ENST00000440768.6:ENST00000346667.8:ENST00000615491.4:ENST00000359197.9:ENST00000439701.2:ENST00000438033.5:ENST00000492782.6:ENST00000462201.1:ENST00000641948.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	38	2	4.62084	4.665505	4.71017	0.0313633	0.0114708	0.13151	0.0956037
chr9	78018317	78018417	4271813	0	-	0.24	[0,0.28]	chr9	392880	956	INTRON	INTRON	GNAQ	ENSG00000156052.11	ENST00000286548.9:ENST00000411677.1	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.62084	4.665505	4.71017	0.0313633	0.0114708	0.13151	0.0956037
chr15	92933353	92933452	6104028	0	+	0.434343	(0.408,0.44]	chr15	581428	39	INTRON	INTRON	ENSG00000279765:CHD2	ENSG00000279765.3:ENSG00000173575.22	ENST00000630790.1:ENST00000626874.2:ENST00000394196.9:ENST00000635856.1:ENST00000420239.7:ENST00000628375.2:ENST00000625990.3:ENST00000626782.2:ENST00000629136.1:ENST00000637572.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	35	2	4.33238	4.665375	4.99837	0.0218901	0.00131369	0.11491	0.0333932
chr2	33079989	33080089	736791	0	+	0.43	(0.408,0.44]	chr2	84882	584	INTRON	INTRON	LTBP1	ENSG00000049323.16	ENST00000404816.7	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.33238	4.665375	4.99837	0.0218901	0.00131369	0.11491	0.0333932
chr2	55663616	55663715	1125452	0	-	0.373737	(0.35,0.378]	chr2	120771	12	INTRON	INTRON	PNPT1	ENSG00000138035.15	ENST00000447944.7:ENST00000415374.5:ENST00000260604.8:ENST00000415489.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	82	2	3.73225	4.66536	5.59847	5.46487e-4	1.39739e-4	0.0215463	0.0101825
chr19	11133532	11133628	7017286	0	+	0.385417	(0.378,0.408]	chr19	697523	22	UTR3	UTR3:EXON_MRNA	LDLR	ENSG00000130164.14	ENST00000558518.6:ENST00000252444.9	protein_coding	protein_coding	protein_coding	protein_coding	1	74	2	3.3797	4.66522	5.95074	0.00154501	8.87003e-5	0.0362716	0.00842626
chr10	124937159	124937259	4535461	0	+	0.39	(0.378,0.408]	chr10	418562	195	INTRON	INTRON	ENSG00000249456	ENSG00000249456.1	ENST00000508096.1	lncRNA	lncRNA	lncRNA	lncRNA	0	35	2	4.41169	4.664725000000001	4.91776	0.0199606	0.00196368	0.109608	0.0411469
chr11	63866774	63866874	4801148	0	+	0.4	(0.378,0.408]	chr11	445036	164	INTRON	INTRON	MARK2	ENSG00000072518.22	ENST00000377810.8:ENST00000361128.9:ENST00000508192.5:ENST00000350490.11:ENST00000402010.8:ENST00000502399.7:ENST00000425897.3:ENST00000679216.1:ENST00000513765.7:ENST00000543220.5	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.41169	4.664725000000001	4.91776	0.0199606	0.00196368	0.109608	0.0411469
chr9	99152496	99152596	4175921	0	+	0.38	(0.378,0.408]	chr9	380709	33	UTR3	UTR3:EXON_MRNA	TGFBR1	ENSG00000106799.13	ENST00000374990.6:ENST00000374994.9:ENST00000552516.5	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.41169	4.664725000000001	4.91776	0.0199606	0.00196368	0.109608	0.0411469
chr1	235289734	235289834	663478	0	-	0.3	(0.28,0.32]	chr1	78552	286	INTRON	INTRON	ARID4B	ENSG00000054267.22	ENST00000349213.7:ENST00000366603.6:ENST00000264183.9:ENST00000421364.5:ENST00000491632.5:ENST00000418304.1:ENST00000466653.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	38	2	4.2432	4.6647099999999995	5.08622	0.0479043	0.00227525	0.153019	0.0437013
chr15	63734949	63735049	6199897	0	-	0.32	(0.28,0.32]	chr15	591370	1	SS3_PROX	SS3_PROX:INTRON	HERC1	ENSG00000103657.14	ENST00000443617.7:ENST00000561400.1:ENST00000560519.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	38	2	4.2432	4.6647099999999995	5.08622	0.0479043	0.00227525	0.153019	0.0437013
chr10	43404324	43404424	4605458	0	-	0.26	[0,0.28]	chr10	424262	71	INTRON	INTRON	HNRNPF	ENSG00000169813.17	ENST00000356053.7:ENST00000357065.8:ENST00000682386.1:ENST00000337970.7	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	4.38376	4.664685	4.94561	0.0258536	0.0150263	0.133676	0.0994339
chr2	58190598	58190696	1126233	0	-	0.234694	[0,0.28]	chr2	120909	5	EXON_LNCRNA	EXON_LNCRNA:INTRON	FANCL	ENSG00000115392.13	ENST00000696400.1:ENST00000403295.8:ENST00000696492.1:ENST00000427708.7:ENST00000696314.1:ENST00000696315.1:ENST00000696454.1:ENST00000696508.1:ENST00000696548.1:ENST00000696542.1:ENST00000696432.1:ENST00000696319.1:ENST00000403676.6:ENST00000696433.1:ENST00000696434.1:ENST00000696499.1:ENST00000696564.1:ENST00000402135.8:ENST00000696546.1:ENST00000233741.9:ENST00000696316.1:ENST00000696378.1:ENST00000696435.1:ENST00000696493.1:ENST00000696543.1:ENST00000696544.1:ENST00000696545.1:ENST00000696565.1:ENST00000696620.1:ENST00000696621.1:ENST00000696635.1:ENST00000696364.1:ENST00000696634.1:ENST00000696317.1:ENST00000696622.1:ENST00000696467.1:ENST00000696547.1:ENST00000449070.6:ENST00000696305.1:ENST00000417361.2:ENST00000696338.1:ENST00000696361.1:ENST00000696318.1:ENST00000696371.1:ENST00000696409.1:ENST00000696410.1:ENST00000696455.1:ENST00000696468.1:ENST00000696527.1:ENST00000696567.1:ENST00000696324.1:ENST00000696566.1:ENST00000696623.1:ENST00000446381.6:ENST00000696469.1:ENST00000696624.1:ENST00000696411.1:ENST00000696475.1:ENST00000470506.2:ENST00000696358.1:ENST00000696373.1:ENST00000696394.1:ENST00000696320.1:ENST00000696339.1:ENST00000696395.1:ENST00000696341.1:ENST00000696340.1:ENST00000696374.1:ENST00000696396.1:ENST00000696342.1:ENST00000696325.1:ENST00000696399.1:ENST00000696398.1:ENST00000696306.1:ENST00000696397.1:ENST00000696360.1:ENST00000696344.1:ENST00000696343.1:ENST00000696637.1:ENST00000696362.1:ENST00000696528.1:ENST00000696497.1:ENST00000696326.1:ENST00000696638.1:ENST00000696625.1:ENST00000696510.1:ENST00000696438.1:ENST00000696496.1:ENST00000696509.1:ENST00000696569.1:ENST00000696457.1:ENST00000696458.1:ENST00000696473.1:ENST00000696495.1:ENST00000696415.1:ENST00000696472.1:ENST00000696494.1:ENST00000696363.1:ENST00000696414.1:ENST00000696459.1:ENST00000696498.1:ENST00000696532.1:ENST00000696416.1:ENST00000696530.1:ENST00000696460.1:ENST00000696570.1:ENST00000696531.1:ENST00000696307.1:ENST00000696401.1:ENST00000696345.1:ENST00000696377.1:ENST00000696417.1:ENST00000696594.1:ENST00000696595.1:ENST00000696379.1:ENST00000696346.1:ENST00000696380.1:ENST00000696347.1:ENST00000696461.1:ENST00000696596.1:ENST00000696549.1:ENST00000696597.1:ENST00000696550.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	39	2	4.38376	4.664685	4.94561	0.0258536	0.0150263	0.133676	0.0994339
chr2	176283888	176283988	925357	0	+	0.27	[0,0.28]	chr2	101669	131	INTRON	INTRON	MTX2	ENSG00000128654.14	ENST00000420864.5:ENST00000249442.11:ENST00000423461.6:ENST00000443241.5:ENST00000452865.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	39	2	4.38376	4.664685	4.94561	0.0258536	0.0150263	0.133676	0.0994339
chr3	185818146	185818245	1886281	0	-	0.252525	[0,0.28]	chr3	188577	37	INTRON	INTRON	IGF2BP2	ENSG00000073792.16	ENST00000382199.7:ENST00000346192.7:ENST00000457616.6:ENST00000421047.3:ENST00000461957.5:ENST00000493302.5:ENST00000466476.1:ENST00000466214.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	39	2	4.38376	4.664685	4.94561	0.0258536	0.0150263	0.133676	0.0994339
chr8	55928746	55928846	3754824	0	+	0.25	[0,0.28]	chr8	349249	483	INTRON	INTRON	LYN	ENSG00000254087.8	ENST00000519728.6:ENST00000520220.6	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	4.38376	4.664685	4.94561	0.0258536	0.0150263	0.133676	0.0994339
chr7	4689264	4689364	3269985	0	+	0.55	(0.515,0.57]	chr7	303884	60	INTRON	INTRON	FOXK1	ENSG00000164916.11	ENST00000328914.5	protein_coding	protein_coding	protein_coding	protein_coding	1	65	2	3.67453	4.6646350000000005	5.65474	3.27949e-4	9.00945e-5	0.0160995	0.00844245
chr16	29452203	29452298	6470062	0	-	0.421053	(0.408,0.44]	chr16	625075	2	UTR3	UTR3:EXON_MRNA:INTRON	ENSG00000288632:BOLA2-SMG1P6	ENSG00000288632.1:ENSG00000261740.7	ENST00000675579.1:ENST00000569622.6:ENST00000565417.6:ENST00000568556.2:ENST00000380596.10	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:nonsense_mediated_decay:lncRNA	0	35	2	4.4358	4.664535000000001	4.89327	0.00893097	0.00458906	0.0849778	0.0595107
chr2	231099170	231099270	1031861	0	+	0.42	(0.408,0.44]	chr2	110198	116	INTRON	INTRON	PSMD1	ENSG00000173692.14	ENST00000677180.1:ENST00000677259.1:ENST00000676818.1:ENST00000679034.1:ENST00000677230.1:ENST00000678241.1:ENST00000676740.1:ENST00000678460.1:ENST00000619128.5:ENST00000677000.1:ENST00000678679.1:ENST00000678112.1:ENST00000409643.6:ENST00000677724.1:ENST00000679095.1:ENST00000676739.1:ENST00000678632.1:ENST00000677233.1:ENST00000676506.1:ENST00000431051.6:ENST00000308696.11:ENST00000678140.1:ENST00000373635.9:ENST00000677158.1:ENST00000677195.1:ENST00000447633.1:ENST00000488354.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	35	2	4.4358	4.664535000000001	4.89327	0.00893097	0.00458906	0.0849778	0.0595107
chr3	138764254	138764354	1830792	0	-	0.44	(0.408,0.44]	chr3	184051	45	INTRON	INTRON	PIK3CB	ENSG00000051382.9	ENST00000674063.1:ENST00000477593.5:ENST00000462898.5:ENST00000483968.5:ENST00000465581.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	35	2	4.4358	4.664535000000001	4.89327	0.00893097	0.00458906	0.0849778	0.0595107
chr9	133364392	133364478	4370326	0	-	0.569767	(0.515,0.57]	chr9	402175	1	SS5_PROX	SS5_PROX:INTRON	SURF4	ENSG00000148248.14	ENST00000545297.5:ENST00000613129.4:ENST00000618229.4:ENST00000371989.8:ENST00000485435.6:ENST00000465565.1:ENST00000467910.5:ENST00000371991.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	89	2	3.7162	4.66437	5.61254	1.10757e-4	1.22791e-5	0.00945003	0.0026103
chr16	68100696	68100796	6370377	0	+	0.29	(0.28,0.32]	chr16	612188	111	INTRON	INTRON	ENSG00000261864:NFATC3	ENSG00000261864.1:ENSG00000072736.19	ENST00000548144.1:ENST00000563319.5:ENST00000569766.5:ENST00000553077.5:ENST00000566301.5:ENST00000549350.5:ENST00000566893.5:ENST00000575270.5:ENST00000561714.5:ENST00000346183.8:ENST00000568466.6:ENST00000539828.6:ENST00000562171.1:ENST00000349223.9:ENST00000329524.8:ENST00000379165.8:ENST00000562926.5:ENST00000570212.5:ENST00000563796.5:ENST00000567152.5:ENST00000563288.5:ENST00000535127.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA:processed_transcript	1	82	2	3.80982	4.66425	5.51868	0.00162747	3.09593e-4	0.0367966	0.0157609
chr4	152533144	152533243	2275061	0	-	0.383838	(0.378,0.408]	chr4	221128	19	INTRON	INTRON	FBXW7	ENSG00000109670.16	ENST00000281708.10:ENST00000603548.6:ENST00000604872.6:ENST00000647166.1:ENST00000643834.1:ENST00000642901.1:ENST00000604095.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	35	2	4.51854	4.66411	4.80968	0.00748824	0.00679828	0.0772645	0.0711802
chr1	475263	475363	355302	0	-	0.17	[0,0.28]	chr1	40950	950	INTRON	INTRON	ENSG00000237094	ENSG00000237094.12	ENST00000455207.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	38	2	4.5461	4.66376	4.78142	0.0365918	0.00943974	0.138959	0.0861183
chr1	61223038	61223138	128803	0	+	0.22	[0,0.28]	chr1	14782	191	INTRON	INTRON	NFIA	ENSG00000162599.17	ENST00000371191.5:ENST00000664495.1:ENST00000476646.5:ENST00000407417.7:ENST00000479364.1:ENST00000371189.8:ENST00000670151.1:ENST00000664149.1:ENST00000662015.1:ENST00000403491.8:ENST00000371187.7:ENST00000485903.6:ENST00000371185.6:ENST00000371184.6:ENST00000663597.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	38	2	4.5461	4.66376	4.78142	0.0365918	0.00943974	0.138959	0.0861183
chr10	35525563	35525663	4426404	0	+	0.26	[0,0.28]	chr10	407938	2	SS3_PROX	SS3_PROX:INTRON	CCNY	ENSG00000108100.18	ENST00000374706.5:ENST00000493157.6:ENST00000374704.8:ENST00000265375.13:ENST00000339497.7:ENST00000492478.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	38	2	4.5461	4.66376	4.78142	0.0365918	0.00943974	0.138959	0.0861183
chr14	37163480	37163580	5877922	0	-	0.24	[0,0.28]	chr14	558013	2881	INTRON	INTRON	SLC25A21	ENSG00000183032.12	ENST00000331299.6:ENST00000555449.5:ENST00000557611.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	38	2	4.5461	4.66376	4.78142	0.0365918	0.00943974	0.138959	0.0861183
chr2	74210698	74210798	813359	0	+	0.24	[0,0.28]	chr2	90955	1	SS3_PROX	SS3_PROX:INTRON	MTHFD2	ENSG00000065911.13	ENST00000677997.1:ENST00000677170.1:ENST00000678684.1:ENST00000409804.5:ENST00000489041.2:ENST00000470592.5:ENST00000678955.1:ENST00000394053.7:ENST00000677377.1:ENST00000679055.1:ENST00000678340.1:ENST00000409601.1:ENST00000678228.1:ENST00000462026.2:ENST00000678623.1:ENST00000678731.1:ENST00000677299.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	38	2	4.5461	4.66376	4.78142	0.0365918	0.00943974	0.138959	0.0861183
chr2	180997240	180997340	936138	0	+	0.26	[0,0.28]	chr2	102627	73	INTRON	INTRON	UBE2E3	ENSG00000170035.16	ENST00000602303.5:ENST00000602959.5:ENST00000602479.5:ENST00000392415.6:ENST00000602291.5:ENST00000410062.9:ENST00000602499.5:ENST00000602710.5:ENST00000602762.5:ENST00000602888.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	38	2	4.5461	4.66376	4.78142	0.0365918	0.00943974	0.138959	0.0861183
chr4	143898580	143898680	2251424	0	-	0.27	[0,0.28]	chr4	219936	177	INTRON	INTRON	GYPE	ENSG00000197465.14	ENST00000358615.9:ENST00000506264.5:ENST00000437468.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	38	2	4.5461	4.66376	4.78142	0.0365918	0.00943974	0.138959	0.0861183
chr1	41185983	41186051	430264	0	-	0.308824	(0.28,0.32]	chr1	52250	1	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	SCMH1	ENSG00000010803.17	ENST00000695335.1:ENST00000372596.5:ENST00000372597.5:ENST00000337495.9:ENST00000695336.1:ENST00000488592.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	89	2	3.52126	4.663675	5.80609	0.00175369	1.23223e-4	0.0376491	0.00949625
chr1	67424695	67424787	477574	0	-	0.293478	(0.28,0.32]	chr1	57483	4	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SERBP1	ENSG00000142864.15	ENST00000370994.8:ENST00000361219.11:ENST00000370995.6:ENST00000370990.5:ENST00000484880.1:ENST00000490406.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	38	2	4.33863	4.663675	4.98872	0.0207276	0.00838468	0.122348	0.0774402
chr2	191910949	191911048	961649	0	+	0.30303	(0.28,0.32]	chr2	104333	638	INTRON	INTRON	CAVIN2-AS1	ENSG00000233766.8	ENST00000424116.7	lncRNA	lncRNA	lncRNA	lncRNA	0	38	2	4.33863	4.663675	4.98872	0.0207276	0.00838468	0.122348	0.0774402
chr7	102073112	102073212	3368926	0	+	0.29	(0.28,0.32]	chr7	315245	23	INTRON	INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000497815.5:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000558469.5:ENST00000560541.5:ENST00000558836.5:ENST00000606749.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	38	2	4.33863	4.663675	4.98872	0.0207276	0.00838468	0.122348	0.0774402
chr8	116724715	116724815	4033916	0	-	0.32	(0.28,0.32]	chr8	368058	271	INTRON	INTRON	EIF3H	ENSG00000147677.12	ENST00000521861.6:ENST00000276682.8:ENST00000518949.5:ENST00000518995.5:ENST00000522800.5:ENST00000518034.5:ENST00000517974.1:ENST00000522453.1:ENST00000519046.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	38	2	4.33863	4.663675	4.98872	0.0207276	0.00838468	0.122348	0.0774402
chr12	76064477	76064577	5370016	0	-	0.26	[0,0.28]	chr12	512308	30	INTRON	INTRON	NAP1L1	ENSG00000187109.15	ENST00000618691.5:ENST00000552056.5:ENST00000393263.7:ENST00000431879.7:ENST00000552147.5:ENST00000547773.5:ENST00000544816.5:ENST00000542344.5:ENST00000535020.6:ENST00000549596.5:ENST00000552342.5:ENST00000547529.6:ENST00000548044.5:ENST00000550934.5:ENST00000551992.5:ENST00000548273.5:ENST00000551600.5:ENST00000547704.5:ENST00000551524.5:ENST00000549988.5:ENST00000547479.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	38	2	4.63523	4.66357	4.69191	0.0269474	0.0139836	0.123442	0.10247
chr13	97467133	97467233	5520463	0	+	0.26	[0,0.28]	chr13	527787	28	UTR3	UTR3:EXON_MRNA	RAP2A	ENSG00000125249.7	ENST00000245304.5	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.63523	4.66357	4.69191	0.0269474	0.0139836	0.123442	0.10247
chr16	21625814	21625913	6319209	0	+	0.171717	[0,0.28]	chr16	604937	3	INTRON	INTRON	METTL9	ENSG00000197006.15	ENST00000567404.5:ENST00000396014.8:ENST00000358154.8:ENST00000568826.1	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.63523	4.66357	4.69191	0.0269474	0.0139836	0.123442	0.10247
chr18	13044905	13045004	6877122	0	+	0.242424	[0,0.28]	chr18	681428	22	INTRON	INTRON	CEP192	ENSG00000101639.19	ENST00000325971.12:ENST00000506447.5:ENST00000589596.5:ENST00000513432.5:ENST00000511820.6:ENST00000510237.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	38	2	4.63523	4.66357	4.69191	0.0269474	0.0139836	0.123442	0.10247
chr2	27046735	27046835	716644	0	+	0.26	[0,0.28]	chr2	82815	38	INTRON	INTRON	AGBL5	ENSG00000084693.16	ENST00000421915.5	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.63523	4.66357	4.69191	0.0269474	0.0139836	0.123442	0.10247
chr2	70702633	70702731	1153658	0	-	0.27551	[0,0.28]	chr2	123272	59	INTRON	INTRON	ADD2	ENSG00000075340.23	ENST00000403045.6:ENST00000264436.9:ENST00000407644.6:ENST00000355733.7:ENST00000522886.5:ENST00000456320.7:ENST00000413157.6:ENST00000430656.5:ENST00000415348.5:ENST00000425976.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	38	2	4.63523	4.66357	4.69191	0.0269474	0.0139836	0.123442	0.10247
chr3	108574279	108574379	1770202	0	-	0.28	[0,0.28]	chr3	179116	43	INTRON	INTRON	CIP2A	ENSG00000163507.15	ENST00000295746.13:ENST00000491772.5:ENST00000481530.5:ENST00000487834.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	38	2	4.63523	4.66357	4.69191	0.0269474	0.0139836	0.123442	0.10247
chr6	96534821	96534913	2917376	0	+	0.26087	[0,0.28]	chr6	275744	1	INTRON	INTRON	UFL1	ENSG00000014123.10	ENST00000369278.5	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.63523	4.66357	4.69191	0.0269474	0.0139836	0.123442	0.10247
chr7	22857023	22857075	3288713	0	+	0.25	[0,0.28]	chr7	305433	2	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	SNHG26	ENSG00000228649.10	ENST00000415611.8:ENST00000667557.1:ENST00000422542.4:ENST00000656301.1:ENST00000661147.1:ENST00000656687.2:ENST00000662021.1:ENST00000691516.1:ENST00000685098.1:ENST00000689892.1:ENST00000663057.1:ENST00000657608.1:ENST00000688000.1:ENST00000690219.1:ENST00000658124.1:ENST00000661582.1:ENST00000671680.1:ENST00000432668.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	0	38	2	4.63523	4.66357	4.69191	0.0269474	0.0139836	0.123442	0.10247
chr7	64909777	64909876	3321153	0	+	0.272727	[0,0.28]	chr7	308781	60	INTRON	INTRON	ZNF273	ENSG00000198039.12	ENST00000527278.5:ENST00000489672.5:ENST00000476120.2:ENST00000395375.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	38	2	4.63523	4.66357	4.69191	0.0269474	0.0139836	0.123442	0.10247
chr17	19063641	19063740	6740851	0	-	0.585859	(0.57,1]	chr17	661756	4	EXON_SMALL	EXON_SMALL	SNORD3B-2	ENSG00000262074.7	ENST00000571722.3	snoRNA	snoRNA	snoRNA	snoRNA	23	466	2	3.77872	4.663494999999999	5.54827	5.51383e-11	1.531e-12	8.20494e-7	5.28093e-8
chr15	40707082	40707178	6003302	0	+	0.354167	(0.35,0.378]	chr15	571022	4	INTRON	INTRON	RAD51	ENSG00000051180.17	ENST00000527860.5:ENST00000423169.6:ENST00000557850.5:ENST00000267868.8:ENST00000645673.2:ENST00000382643.7:ENST00000525066.5:ENST00000532743.6:ENST00000531277.2:ENST00000533741.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	36	2	4.29839	4.663355	5.02832	0.0294717	0.00156444	0.128055	0.0365263
chr14	49687241	49687339	5886500	0	-	0.387755	(0.378,0.408]	chr14	558625	32	INTRON	INTRON	POLE2	ENSG00000100479.13	ENST00000216367.10:ENST00000539565.6:ENST00000556584.5:ENST00000554396.5:ENST00000553805.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	36	2	4.32174	4.663165	5.00459	0.0132362	0.00371142	0.0999551	0.0535094
chr1	176028188	176028287	589907	0	-	0.313131	(0.28,0.32]	chr1	70892	1	INTRON	INTRON	COP1	ENSG00000143207.21	ENST00000367669.8:ENST00000367667.5:ENST00000461830.6:ENST00000367666.5:ENST00000649803.1:ENST00000308769.12	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	37	2	4.4263	4.66296	4.89962	0.0330296	0.00425206	0.133816	0.0595557
chr10	48325296	48325396	4431175	0	+	0.32	(0.28,0.32]	chr10	408563	167	INTRON	INTRON	MAPK8	ENSG00000107643.17	ENST00000395611.7:ENST00000432379.5:ENST00000374189.6:ENST00000429041.6:ENST00000374179.8:ENST00000426557.5:ENST00000476134.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	37	2	4.4263	4.66296	4.89962	0.0330296	0.00425206	0.133816	0.0595557
chr11	61431471	61431571	4796531	0	+	0.3	(0.28,0.32]	chr11	444286	14	EXON_MRNA	EXON_MRNA:INTRON	ENSG00000256591:SDHAF2	ENSG00000256591.5:ENSG00000167985.7	ENST00000544025.5:ENST00000542794.5:ENST00000541135.5:ENST00000542074.1:ENST00000536670.5:ENST00000301761.7:ENST00000534878.5:ENST00000623232.1:ENST00000538594.5:ENST00000537782.5:ENST00000359614.9:ENST00000544801.5:ENST00000536250.1:ENST00000544880.1:ENST00000543265.1:ENST00000543044.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:TEC:processed_transcript	0	37	2	4.4263	4.66296	4.89962	0.0330296	0.00425206	0.133816	0.0595557
chr16	47182330	47182430	6480898	0	-	0.32	(0.28,0.32]	chr16	626957	193	INTRON	INTRON	ITFG1	ENSG00000129636.13	ENST00000568047.5:ENST00000320640.11:ENST00000537184.6:ENST00000542691.5:ENST00000567957.1:ENST00000544001.6:ENST00000565262.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	37	2	4.4263	4.66296	4.89962	0.0330296	0.00425206	0.133816	0.0595557
chr4	39769158	39769258	1953705	0	+	0.31	(0.28,0.32]	chr4	195650	80	INTRON	INTRON	UBE2K	ENSG00000078140.14	ENST00000510934.5:ENST00000261427.10:ENST00000438068.6:ENST00000513231.5:ENST00000503368.5:ENST00000445950.2:ENST00000510719.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	37	2	4.4263	4.66296	4.89962	0.0330296	0.00425206	0.133816	0.0595557
chr7	105119814	105119913	3601187	0	-	0.313131	(0.28,0.32]	chr7	336054	14	INTRON	INTRON	SRPK2	ENSG00000135250.17	ENST00000465072.5:ENST00000393651.8:ENST00000357311.7:ENST00000466917.1:ENST00000485455.1:ENST00000477925.5:ENST00000489828.5:ENST00000474770.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	37	2	4.4263	4.66296	4.89962	0.0330296	0.00425206	0.133816	0.0595557
chr8	31146163	31146260	3729086	0	+	0.298969	(0.28,0.32]	chr8	346676	22	INTRON	INTRON	WRN	ENSG00000165392.11	ENST00000650667.1:ENST00000298139.7:ENST00000521620.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	37	2	4.4263	4.66296	4.89962	0.0330296	0.00425206	0.133816	0.0595557
chr2	121633974	121634074	1222235	0	-	0.51	(0.476,0.515]	chr2	130061	274	INTRON	INTRON	CLASP1	ENSG00000074054.20	ENST00000263710.8:ENST00000397587.7:ENST00000541377.5:ENST00000409078.8:ENST00000455322.6	protein_coding	protein_coding	protein_coding	protein_coding	5	334	2	4.52567	4.66278	4.79989	1.67479e-8	6.8432e-9	4.12636e-5	2.82262e-5
chr22	30967726	30967821	7577673	0	-	0.378947	(0.378,0.408]	chr22	775378	8	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	MORC2	ENSG00000133422.14	ENST00000397641.8:ENST00000215862.8	protein_coding	protein_coding	protein_coding	protein_coding	2	101	2	2.82967	4.662755000000001	6.49584	0.00189968	5.55891e-6	0.0402736	0.00176075
chr16	195394	195493	6425841	0	-	0.464646	(0.44,0.476]	chr16	617415	20	INTRON	INTRON	LUC7L	ENSG00000007392.17	ENST00000337351.8:ENST00000426094.5:ENST00000397783.5:ENST00000629543.2:ENST00000490762.5:ENST00000293872.13:ENST00000429378.5:ENST00000464711.5:ENST00000419516.5:ENST00000397780.5:ENST00000495349.5:ENST00000418978.5:ENST00000430864.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	113	2	3.04073	4.66262	6.28451	1.55969e-4	1.11581e-5	0.0106835	0.00263978
chr18	2668818	2668917	6864993	0	+	0.313131	(0.28,0.32]	chr18	679952	14	INTRON	INTRON	SMCHD1	ENSG00000101596.17	ENST00000320876.11:ENST00000688342.1:ENST00000684915.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	118	2	3.76653	4.66249	5.55845	0.00141854	2.26286e-5	0.0340865	0.00371897
chr13	51732074	51732174	5502998	0	+	0.32	(0.28,0.32]	chr13	526557	39	INTRON	INTRON	WDFY2	ENSG00000139668.9	ENST00000298125.7	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	4.52233	4.66244	4.80255	0.0137406	0.0129279	0.0990564	0.0949306
chr4	110127408	110127508	2227022	0	-	0.31	(0.28,0.32]	chr4	218024	214	INTRON	INTRON	ELOVL6	ENSG00000170522.10	ENST00000394607.7:ENST00000302274.8:ENST00000514184.5:ENST00000506625.5:ENST00000506461.1:ENST00000503885.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	37	2	4.52233	4.66244	4.80255	0.0137406	0.0129279	0.0990564	0.0949306
chr8	17956972	17957067	3708082	0	+	0.305263	(0.28,0.32]	chr8	343881	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PCM1	ENSG00000078674.19	ENST00000325083.13:ENST00000517730.5:ENST00000519253.5:ENST00000524226.5	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	4.52233	4.66244	4.80255	0.0137406	0.0129279	0.0990564	0.0949306
chr1	42216125	42216224	431239	0	-	0.373737	(0.35,0.378]	chr1	52305	99	INTRON	INTRON	FOXJ3	ENSG00000198815.9	ENST00000372573.5:ENST00000372572.5:ENST00000361776.5:ENST00000545068.5:ENST00000361346.6:ENST00000445886.5	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.40128	4.662414999999999	4.92355	0.0120289	0.00573514	0.0962115	0.0657377
chr14	27600637	27600737	5848858	0	-	0.36	(0.35,0.378]	chr14	556260	2781	INTRON	INTRON	ENSG00000258932	ENSG00000258932.5	ENST00000553392.5:ENST00000554904.5:ENST00000556890.1:ENST00000555797.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	0	36	2	4.40128	4.662414999999999	4.92355	0.0120289	0.00573514	0.0962115	0.0657377
chr3	195963521	195963621	1896691	0	-	0.37	(0.35,0.378]	chr3	189799	1	SS3_PROX	SS3_PROX:INTRON	SDHAP1	ENSG00000185485.14	ENST00000427149.5:ENST00000427841.5:ENST00000354559.9:ENST00000440850.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	36	2	4.40128	4.662414999999999	4.92355	0.0120289	0.00573514	0.0962115	0.0657377
chr1	65276309	65276409	135756	0	+	0.35	(0.32,0.35]	chr1	15346	110	INTRON	INTRON	DNAJC6	ENSG00000116675.16	ENST00000463018.5:ENST00000494710.6:ENST00000263441.11:ENST00000395325.7:ENST00000483402.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	142	2	2.79085	4.662405	6.53396	2.78537e-4	1.24644e-5	0.0148769	0.00280854
chr10	26759338	26759438	4583474	0	-	0.27	[0,0.28]	chr10	422360	1	SS3_PROX	SS3_PROX:INTRON	ABI1	ENSG00000136754.18	ENST00000376138.7:ENST00000376166.5:ENST00000376160.5:ENST00000376139.6:ENST00000376142.6:ENST00000359188.8:ENST00000376170.8:ENST00000536334.5:ENST00000490841.6:ENST00000376137.8:ENST00000376140.4:ENST00000346832.10	protein_coding	protein_coding	protein_coding	protein_coding	3	144	2	3.08562	4.662395	6.23917	2.54178e-4	2.51349e-4	0.0146599	0.0142045
chr1	180821161	180821260	271493	0	+	0.323232	(0.32,0.35]	chr1	31648	93	INTRON	INTRON	XPR1	ENSG00000143324.14	ENST00000367590.9:ENST00000367589.3	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.45629	4.661255000000001	4.86622	0.0246089	0.00354075	0.12011	0.0546236
chr6	17682927	17683026	3065973	0	-	0.333333	(0.32,0.35]	chr6	284866	68	INTRON	INTRON	NUP153	ENSG00000124789.12	ENST00000613258.4:ENST00000537253.5:ENST00000262077.3	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.45629	4.661255000000001	4.86622	0.0246089	0.00354075	0.12011	0.0546236
chr16	58523169	58523269	6495246	0	-	0.5	(0.476,0.515]	chr16	628382	4	SS5_PROX	SS5_PROX:INTRON	CNOT1	ENSG00000125107.19	ENST00000317147.10:ENST00000563130.5:ENST00000569240.5:ENST00000567188.5:ENST00000569924.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	75	2	3.19119	4.66109	6.13099	0.00325748	2.19436e-5	0.0524329	0.00381314
chr1	2234860	2234960	2231	0	+	0.62	(0.57,1]	chr1	553	18	INTRON	INTRON	SKI	ENSG00000157933.10	ENST00000378536.5:ENST00000508416.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	87	2	4.64767	4.661075	4.67448	2.84519e-7	2.78232e-7	2.87652e-4	2.65117e-4
chr6	158563129	158563229	3021629	0	+	0.51	(0.476,0.515]	chr6	281792	25	INTRON	INTRON	TMEM181	ENSG00000146433.10	ENST00000367090.4:ENST00000684151.1	protein_coding	protein_coding	protein_coding	protein_coding	3	116	2	2.69104	4.6609099999999994	6.63078	9.94264e-4	1.32886e-6	0.0290397	7.49696e-4
chr14	101765663	101765762	5818534	0	+	0.40404	(0.378,0.408]	chr14	551818	5	UTR3	UTR3:EXON_MRNA:INTRON	PPP2R5C	ENSG00000078304.20	ENST00000694906.1:ENST00000422945.6:ENST00000554442.5:ENST00000556068.5:ENST00000556260.6:ENST00000328724.9:ENST00000554504.1:ENST00000553890.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	213	2	4.40966	4.66089	4.91212	8.80819e-7	1.55106e-7	5.75788e-4	1.80918e-4
chr1	19188631	19188729	386610	0	-	0.357143	(0.35,0.378]	chr1	46093	7	INTRON	INTRON	UBR4	ENSG00000127481.15	ENST00000375254.8	protein_coding	protein_coding	protein_coding	protein_coding	2	100	2	3.45464	4.66081	5.86698	1.76496e-4	9.07166e-5	0.01216	0.00796627
chr10	96846215	96846315	4503104	0	+	0.34	(0.32,0.35]	chr10	414529	120	INTRON	INTRON	LCOR	ENSG00000196233.14	ENST00000676067.1:ENST00000676257.1:ENST00000676187.1:ENST00000675151.1:ENST00000675687.1:ENST00000675251.1:ENST00000676123.1:ENST00000371103.8:ENST00000675471.1:ENST00000421806.4:ENST00000675902.1:ENST00000540664.6:ENST00000676414.1:ENST00000675537.1:ENST00000675117.1:ENST00000675125.1:ENST00000356016.7:ENST00000371097.8:ENST00000676381.1:ENST00000674796.1:ENST00000674725.1:ENST00000675971.1:ENST00000676373.1:ENST00000676314.1:ENST00000675915.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	36	2	4.55661	4.66081	4.76501	0.0114287	0.00927858	0.0886611	0.0855292
chr17	47053425	47053524	6788168	0	-	0.333333	(0.32,0.35]	chr17	669478	54	EXON_LNCRNA	EXON_LNCRNA:INTRON	ENSG00000262879	ENSG00000262879.6	ENST00000668245.1:ENST00000670688.1:ENST00000655083.1:ENST00000656035.1:ENST00000663416.1:ENST00000575930.5:ENST00000663847.1:ENST00000571901.5:ENST00000660267.1:ENST00000570314.2:ENST00000660600.1:ENST00000669500.1:ENST00000660448.1:ENST00000662706.1:ENST00000655133.1:ENST00000571143.2:ENST00000663210.1:ENST00000653193.1:ENST00000668766.1:ENST00000661492.1:ENST00000575173.2:ENST00000666536.1:ENST00000653065.1:ENST00000668604.1:ENST00000658121.1:ENST00000573341.6:ENST00000667718.1	lncRNA	lncRNA	lncRNA	lncRNA	0	36	2	4.55661	4.66081	4.76501	0.0114287	0.00927858	0.0886611	0.0855292
chr3	38392211	38392310	1399947	0	+	0.323232	(0.32,0.35]	chr3	146865	125	INTRON	INTRON	XYLB	ENSG00000093217.11	ENST00000207870.8:ENST00000650590.1:ENST00000424034.5:ENST00000649234.1:ENST00000472721.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	36	2	4.55661	4.66081	4.76501	0.0114287	0.00927858	0.0886611	0.0855292
chr10	3131380	3131480	4382189	0	+	0.37	(0.35,0.378]	chr10	404157	10	INTRON	INTRON	PFKP	ENSG00000067057.18	ENST00000381125.9:ENST00000381075.7:ENST00000678206.1:ENST00000678089.1:ENST00000676796.1:ENST00000415005.6:ENST00000381072.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	77	2	3.26794	4.66017	6.0524	0.00257067	7.64013e-5	0.0466761	0.0078038
chr7	133514153	133514252	3420787	0	+	0.50505	(0.476,0.515]	chr7	319376	301	INTRON	INTRON	EXOC4	ENSG00000131558.15	ENST00000486013.5:ENST00000253861.5:ENST00000486409.6:ENST00000479839.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	78	2	3.92306	4.660075	5.39709	2.55871e-4	1.72405e-4	0.0142249	0.0120625
chr6	31541582	31541633	3078844	0	-	0.54902	(0.515,0.57]	chr6	286774	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DDX39B	ENSG00000198563.14	ENST00000458640.5:ENST00000462256.5:ENST00000396172.6:ENST00000482195.5:ENST00000431908.5:ENST00000481456.1:ENST00000428098.5:ENST00000456662.5:ENST00000428450.5:ENST00000449757.5:ENST00000456976.5:ENST00000418897.5:ENST00000419020.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	73	2	4.12784	4.65996	5.19208	3.4344e-4	4.0232e-5	0.0164987	0.00539487
chr17	48575208	48575307	6791017	0	-	0.40404	(0.378,0.408]	chr17	669986	1	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	HOXB3	ENSG00000120093.12	ENST00000498678.6:ENST00000472863.5:ENST00000460160.5:ENST00000489475.5:ENST00000476342.1:ENST00000465120.3:ENST00000464266.1:ENST00000552000.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	72	2	3.72397	4.659395	5.59482	4.23783e-4	3.23378e-4	0.0189958	0.0159645
chr11	18351281	18351380	4749506	0	+	0.494949	(0.476,0.515]	chr11	439674	26	INTRON	INTRON	GTF2H1	ENSG00000110768.12	ENST00000453096.6:ENST00000418116.6:ENST00000265963.9:ENST00000534641.5:ENST00000530496.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	75	2	3.60627	4.65921	5.71215	7.49088e-4	5.54639e-5	0.0251179	0.00609037
chr21	44015550	44015650	7415064	0	+	0.34	(0.32,0.35]	chr21	755783	26	INTRON	INTRON	TRAPPC10	ENSG00000160218.13	ENST00000291574.9:ENST00000380221.7:ENST00000422875.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	84	2	3.54926	4.65893	5.7686	0.00133843	8.9843e-5	0.0335491	0.0079464
chr10	73716680	73716766	4651925	0	-	0.325581	(0.32,0.35]	chr10	428193	1	INTRON	INTRON	BMS1P4	ENSG00000271816.1:ENSG00000242338.6	ENST00000580790.1:ENST00000584747.5	lncRNA	lncRNA	lncRNA:transcribed_unprocessed_pseudogene	lncRNA:processed_transcript	1	77	2	3.65187	4.658765	5.66566	6.06695e-4	5.49434e-4	0.0226059	0.0213049
chr20	35627913	35628009	7335390	0	-	0.53125	(0.515,0.57]	chr20	747243	1	INTRON	INTRON	CPNE1	ENSG00000214078.13	ENST00000352393.8:ENST00000397443.7:ENST00000317677.9:ENST00000415920.5:ENST00000483359.5:ENST00000397442.5:ENST00000483495.5:ENST00000401607.6:ENST00000437340.5:ENST00000430570.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	138	2	2.62996	4.658465	6.68697	2.71392e-4	3.8991e-8	0.015111	7.9448e-5
chr16	16084736	16084835	6309126	0	+	0.50505	(0.476,0.515]	chr16	603608	8	INTRON	INTRON	ABCC1	ENSG00000103222.20	ENST00000678422.1:ENST00000677164.1:ENST00000399408.7:ENST00000572882.3:ENST00000399410.8:ENST00000575422.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	72	2	3.40003	4.658390000000001	5.91675	0.00139193	6.46096e-5	0.0341261	0.00711194
chr17	16176201	16176301	6734841	0	-	0.28	[0,0.28]	chr17	660738	38	INTRON	INTRON	NCOR1	ENSG00000141027.22	ENST00000268712.8:ENST00000395851.5:ENST00000395848.5:ENST00000411510.5:ENST00000582357.5:ENST00000436828.5:ENST00000460276.5:ENST00000585296.1:ENST00000579974.1:ENST00000430577.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	38	2	4.46726	4.658284999999999	4.84931	0.0427997	0.00779241	0.148082	0.0787356
chr2	171084844	171084944	1263336	0	-	0.27	[0,0.28]	chr2	133909	16	INTRON	INTRON	TLK1	ENSG00000198586.14	ENST00000431350.7:ENST00000360843.7:ENST00000359766.7:ENST00000521943.5:ENST00000409443.6:ENST00000413010.5:ENST00000486857.5:ENST00000470340.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	38	2	4.46726	4.658284999999999	4.84931	0.0427997	0.00779241	0.148082	0.0787356
chr7	99559715	99559812	3362699	0	+	0.43299	(0.408,0.44]	chr7	314120	3	INTRON	INTRON	ZNF655	ENSG00000197343.11	ENST00000320583.9:ENST00000626122.2:ENST00000467680.5:ENST00000357864.6:ENST00000489320.1:ENST00000452314.5:ENST00000416144.5:ENST00000454654.5:ENST00000412636.5:ENST00000252713.9:ENST00000449244.5:ENST00000423973.5:ENST00000493947.5:ENST00000425063.5:ENST00000493277.5:ENST00000422422.5:ENST00000488751.1:ENST00000422164.5:ENST00000427931.5:ENST00000422647.5:ENST00000424881.5:ENST00000440391.5:ENST00000394163.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	71	2	3.55215	4.65796	5.76377	7.01039e-4	1.64089e-4	0.0241881	0.0116917
chr4	67483770	67483870	2152880	0	-	0.2	[0,0.28]	chr4	211913	84	INTRON	INTRON	CENPC	ENSG00000145241.11	ENST00000273853.11:ENST00000513216.5:ENST00000506882.5:ENST00000515140.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	38	2	4.55618	4.65791	4.75964	0.0232081	0.0171034	0.118148	0.110899
chr6	7596989	7597088	2800201	0	+	0.242424	[0,0.28]	chr6	263918	15	INTRON	INTRON	SNRNP48	ENSG00000168566.13	ENST00000342415.6:ENST00000634363.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	38	2	4.55618	4.65791	4.75964	0.0232081	0.0171034	0.118148	0.110899
chr6	45200072	45200172	3102207	0	-	0.24	[0,0.28]	chr6	290476	937	INTRON	INTRON	SUPT3H	ENSG00000196284.17	ENST00000475057.5:ENST00000371459.6:ENST00000371460.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	38	2	4.55618	4.65791	4.75964	0.0232081	0.0171034	0.118148	0.110899
chr6	147344063	147344163	2990125	0	+	0.2	[0,0.28]	chr6	280116	43	INTRON	INTRON	STXBP5	ENSG00000164506.15	ENST00000321680.11:ENST00000367481.7:ENST00000367480.7:ENST00000367475.6:ENST00000392291.2	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.55618	4.65791	4.75964	0.0232081	0.0171034	0.118148	0.110899
chr6	158058169	158058266	3017784	0	+	0.278351	[0,0.28]	chr6	281507	28	INTRON	INTRON	SYNJ2	ENSG00000078269.15	ENST00000355585.9:ENST00000640338.1:ENST00000638626.1:ENST00000485863.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	38	2	4.55618	4.65791	4.75964	0.0232081	0.0171034	0.118148	0.110899
chr9	4728099	4728198	4228798	0	-	0.323232	(0.32,0.35]	chr9	388786	51	INTRON	INTRON	AK3	ENSG00000147853.17	ENST00000381809.8:ENST00000611749.4:ENST00000359883.6:ENST00000447596.4	protein_coding	protein_coding	protein_coding	protein_coding	1	77	2	3.68775	4.65785	5.62795	7.01392e-4	4.66127e-4	0.024224	0.0195589
chr5	10357264	10357363	2317682	0	+	0.333333	(0.32,0.35]	chr5	224612	22	INTRON	INTRON	MARCHF6	ENSG00000145495.16	ENST00000274140.10:ENST00000449913.6:ENST00000502795.5:ENST00000511802.5:ENST00000503788.5:ENST00000640713.1:ENST00000510872.5:ENST00000507863.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	126	2	3.23208	4.657484999999999	6.08289	1.06767e-4	6.93502e-5	0.00924854	0.00690574
chr11	78407255	78407355	5000282	0	-	0.34	(0.32,0.35]	chr11	472472	428	INTRON	INTRON	GAB2	ENSG00000033327.13	ENST00000361507.5:ENST00000526030.1:ENST00000528886.5:ENST00000530915.1:ENST00000534823.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	103	2	3.25954	4.657145	6.05475	2.88334e-4	1.2096e-4	0.0150627	0.00992813
chr10	96920031	96920131	4503849	0	+	0.37	(0.35,0.378]	chr10	414561	119	INTRON	INTRON	LCOR	ENSG00000196233.14	ENST00000676067.1:ENST00000676257.1:ENST00000676187.1:ENST00000675151.1:ENST00000675687.1:ENST00000675251.1:ENST00000676123.1:ENST00000371103.8:ENST00000675471.1:ENST00000421806.4:ENST00000675902.1:ENST00000540664.6:ENST00000676414.1:ENST00000675537.1:ENST00000675117.1:ENST00000675125.1:ENST00000356016.7:ENST00000371097.8:ENST00000676381.1:ENST00000674796.1:ENST00000674725.1:ENST00000675971.1:ENST00000676373.1:ENST00000493486.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	35	2	4.5655	4.65705	4.7486	0.0155464	0.00418965	0.100909	0.0591344
chr16	24138829	24138929	6326800	0	+	0.37	(0.35,0.378]	chr16	605753	145	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.5655	4.65705	4.7486	0.0155464	0.00418965	0.100909	0.0591344
chr3	142378884	142378984	1836914	0	-	0.36	(0.35,0.378]	chr3	184595	19	INTRON	INTRON	XRN1	ENSG00000114127.11	ENST00000264951.8:ENST00000392981.7:ENST00000498077.6:ENST00000472697.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	35	2	4.5655	4.65705	4.7486	0.0155464	0.00418965	0.100909	0.0591344
chr1	17418432	17418531	384768	0	-	0.515152	(0.476,0.515]	chr1	45465	14	INTRON	INTRON	RCC2	ENSG00000179051.14	ENST00000375436.9:ENST00000375433.3	protein_coding	protein_coding	protein_coding	protein_coding	1	76	2	3.77334	4.656975	5.54061	3.52709e-4	1.30462e-4	0.0174637	0.00983066
chr1	35876358	35876458	70568	0	+	0.51	(0.476,0.515]	chr1	9024	61	INTRON	INTRON	AGO1	ENSG00000092847.13	ENST00000373206.5	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.21964	4.656935	5.09423	0.0167715	0.00204588	0.110511	0.04086
chr12	68725998	68726097	5162257	0	+	0.515152	(0.476,0.515]	chr12	488747	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NUP107	ENSG00000111581.10	ENST00000378905.6:ENST00000229179.9:ENST00000535718.5:ENST00000539906.5:ENST00000538993.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	36	2	4.21964	4.656935	5.09423	0.0167715	0.00204588	0.110511	0.04086
chr1	173852477	173852570	256669	0	+	0.354839	(0.35,0.378]	chr1	30669	6	INTRON	INTRON	DARS2	ENSG00000117593.12	ENST00000648807.1:ENST00000648960.1:ENST00000647788.1:ENST00000647730.1:ENST00000649067.1:ENST00000649689.2:ENST00000648271.1:ENST00000647645.1:ENST00000471476.2:ENST00000650297.1:ENST00000649106.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	35	2	4.64457	4.65693	4.66929	0.012652	0.00541617	0.0926667	0.066545000000000007
chr11	102446636	102446736	5025907	0	-	0.36	(0.35,0.378]	chr11	473887	441	INTRON	INTRON	TMEM123	ENSG00000152558.15	ENST00000361236.7:ENST00000398136.7:ENST00000532161.5:ENST00000528969.5:ENST00000529492.5:ENST00000525577.5:ENST00000531103.5:ENST00000526676.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	35	2	4.64457	4.65693	4.66929	0.012652	0.00541617	0.0926667	0.066545000000000007
chr15	91002584	91002682	6259758	0	-	0.377551	(0.35,0.378]	chr15	597381	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ENSG00000284946:VPS33B	ENSG00000284946.1:ENSG00000184056.15	ENST00000643536.1:ENST00000647331.1:ENST00000333371.8:ENST00000535906.1:ENST00000574755.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	35	2	4.64457	4.65693	4.66929	0.012652	0.00541617	0.0926667	0.066545000000000007
chr3	9936971	9937061	1361859	0	+	0.366667	(0.35,0.378]	chr3	143333	9	INTRON	INTRON	CRELD1	ENSG00000163703.20	ENST00000683279.1:ENST00000684493.1:ENST00000673935.2:ENST00000683239.1:ENST00000673737.2:ENST00000682403.1:ENST00000683232.1:ENST00000683970.1:ENST00000683316.1:ENST00000683547.1:ENST00000683083.1:ENST00000383811.8:ENST00000452070.6:ENST00000682798.1:ENST00000467713.6:ENST00000683888.1:ENST00000683189.1:ENST00000684181.1:ENST00000674057.1:ENST00000682642.1:ENST00000682120.1:ENST00000683603.1:ENST00000684291.1:ENST00000683127.1:ENST00000684648.1:ENST00000465716.2:ENST00000674067.2:ENST00000682907.1:ENST00000682906.1:ENST00000683891.1:ENST00000682318.1:ENST00000682200.1:ENST00000684629.1:ENST00000684243.1:ENST00000326434.9:ENST00000683835.1:ENST00000682783.1:ENST00000682790.1:ENST00000682355.1:ENST00000682570.1:ENST00000684613.1:ENST00000683601.1:ENST00000682397.1:ENST00000683301.1:ENST00000682884.1:ENST00000683507.1:ENST00000683982.1:ENST00000683921.1:ENST00000684212.1:ENST00000682929.1:ENST00000684526.1:ENST00000673677.2:ENST00000684318.1:ENST00000684601.1:ENST00000397170.8:ENST00000683849.1:ENST00000682771.1:ENST00000673635.2:ENST00000684532.1:ENST00000414117.6:ENST00000683736.1:ENST00000682866.1:ENST00000683122.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	35	2	4.64457	4.65693	4.66929	0.012652	0.00541617	0.0926667	0.066545000000000007
chr4	99010550	99010649	2002858	0	+	0.353535	(0.35,0.378]	chr4	199803	43	INTRON	INTRON	METAP1	ENSG00000164024.12	ENST00000510209.5:ENST00000296411.11:ENST00000507537.5:ENST00000506238.5:ENST00000503247.5:ENST00000510107.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	35	2	4.64457	4.65693	4.66929	0.012652	0.00541617	0.0926667	0.066545000000000007
chr1	247161564	247161664	683770	0	-	0.23	[0,0.28]	chr1	80174	13	INTRON	INTRON	ZNF124	ENSG00000196418.13	ENST00000472531.5:ENST00000491356.5:ENST00000543802.3:ENST00000340684.10:ENST00000491848.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	93	2	3.00498	4.656815	6.30865	0.00876063	1.91171e-4	0.0846118	0.0126567
chr5	131363655	131363755	2485637	0	+	0.46	(0.44,0.476]	chr5	237134	37	INTRON	INTRON	CDC42SE2	ENSG00000158985.14	ENST00000395246.5:ENST00000505065.2:ENST00000503291.5:ENST00000360515.7	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.12843	4.65662	5.18481	0.0337192	6.21872e-4	0.134145	0.0223951
chr10	73413118	73413216	4649413	0	-	0.489796	(0.476,0.515]	chr10	427804	49	INTRON	INTRON	ANXA7	ENSG00000138279.16	ENST00000372921.10:ENST00000372919.8:ENST00000492380.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	34	2	4.61402	4.6566	4.69918	0.00947755	0.00400966	0.0817766	0.057767
chr10	103346184	103346276	4684774	0	-	0.48913	(0.476,0.515]	chr10	432491	7	INTRON	INTRON	PCGF6	ENSG00000156374.16	ENST00000369847.4:ENST00000337211.8:ENST00000490296.1:ENST00000647574.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	34	2	4.61402	4.6566	4.69918	0.00947755	0.00400966	0.0817766	0.057767
chr12	1769551	1769650	5064957	0	+	0.50505	(0.476,0.515]	chr12	477882	82	INTRON	INTRON	ADIPOR2	ENSG00000006831.10	ENST00000537545.1:ENST00000357103.5:ENST00000543456.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	34	2	4.61402	4.6566	4.69918	0.00947755	0.00400966	0.0817766	0.057767
chr13	21458453	21458553	5557480	0	-	0.49	(0.476,0.515]	chr13	531171	324	INTRON	INTRON	ZDHHC20	ENSG00000180776.16	ENST00000400590.8:ENST00000542645.5:ENST00000382466.7:ENST00000320220.13:ENST00000415724.2	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.61402	4.6566	4.69918	0.00947755	0.00400966	0.0817766	0.057767
chr6	34612203	34612303	3085372	0	-	0.48	(0.476,0.515]	chr6	288679	49	INTRON	INTRON	ILRUN	ENSG00000196821.10	ENST00000374026.7:ENST00000374023.8:ENST00000374021.1	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.61402	4.6566	4.69918	0.00947755	0.00400966	0.0817766	0.057767
chr7	23428180	23428279	3503243	0	-	0.50505	(0.476,0.515]	chr7	326906	90	INTRON	INTRON	IGF2BP3	ENSG00000136231.14	ENST00000258729.8:ENST00000421467.6:ENST00000468263.5:ENST00000479504.5:ENST00000466809.6:ENST00000491719.5:ENST00000465058.5:ENST00000469723.5:ENST00000476938.5:ENST00000468005.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	34	2	4.61402	4.6566	4.69918	0.00947755	0.00400966	0.0817766	0.057767
chrX	40080360	40080460	7804677	0	-	0.48	(0.476,0.515]	chrX	795798	20	INTRON	INTRON	BCOR	ENSG00000183337.18	ENST00000378455.8:ENST00000397354.7:ENST00000342274.8:ENST00000615339.2:ENST00000680831.1:ENST00000378444.9:ENST00000679513.1:ENST00000672922.2:ENST00000673391.1:ENST00000406200.4:ENST00000412952.1	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.61402	4.6566	4.69918	0.00947755	0.00400966	0.0817766	0.057767
chr17	44055419	44055519	6778282	0	-	0.48	(0.476,0.515]	chr17	668123	148	INTRON	INTRON	LSM12	ENSG00000161654.10	ENST00000591247.6:ENST00000293406.8:ENST00000585388.2	protein_coding	protein_coding	protein_coding	protein_coding	1	75	2	3.64127	4.656205	5.67114	6.42302e-4	6.83906e-5	0.0231685	0.00684369
chr3	185761596	185761696	1885714	0	-	0.47	(0.44,0.476]	chr3	188573	629	INTRON	INTRON	IGF2BP2	ENSG00000073792.16	ENST00000382199.7:ENST00000346192.7:ENST00000457616.6:ENST00000421047.3:ENST00000461957.5:ENST00000493302.5:ENST00000466476.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	36	2	4.22393	4.65526	5.08659	0.0162322	0.00226401	0.109464	0.0425438
chr7	149203021	149203120	3445403	0	+	0.464646	(0.44,0.476]	chr7	321367	39	INTRON	INTRON	ZNF282	ENSG00000170265.12	ENST00000610704.5:ENST00000479907.1	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.60647	4.65501	4.70355	0.0102339	0.00383786	0.0850389	0.0562562
chr14	96803266	96803366	5810913	0	+	0.53	(0.515,0.57]	chr14	551001	31	INTRON	INTRON	VRK1	ENSG00000100749.9	ENST00000553683.2:ENST00000680538.1:ENST00000555351.2:ENST00000681195.1:ENST00000681524.1:ENST00000680084.1:ENST00000679533.1:ENST00000681598.1:ENST00000679727.1:ENST00000679758.1:ENST00000680509.1:ENST00000557222.6:ENST00000679977.1:ENST00000680387.1:ENST00000680335.1:ENST00000680683.1:ENST00000681474.1:ENST00000216639.8:ENST00000681363.1:ENST00000681538.1:ENST00000679736.1:ENST00000681176.1:ENST00000680922.1:ENST00000679903.1:ENST00000557352.2:ENST00000681101.1:ENST00000681419.1:ENST00000680348.1:ENST00000679941.1:ENST00000679452.1:ENST00000680849.1:ENST00000679770.1:ENST00000681493.1:ENST00000681778.1:ENST00000680993.1:ENST00000681355.1:ENST00000681695.1:ENST00000681344.1:ENST00000680007.1:ENST00000679918.1:ENST00000681785.1:ENST00000679816.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	33	2	4.31326	4.654805	4.99635	0.0141817	8.06602e-4	0.0959618	0.0258804
chr11	47750121	47750219	4951237	0	-	0.510204	(0.476,0.515]	chr11	464424	34	INTRON	INTRON	FNBP4	ENSG00000109920.13	ENST00000263773.10:ENST00000534003.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	34	2	4.53023	4.654395	4.77856	0.0119748	0.00305743	0.0899583	0.0509893
chr19	3617285	3617384	7118236	0	-	0.494949	(0.476,0.515]	chr19	715856	7	INTRON	INTRON	CACTIN	ENSG00000105298.14	ENST00000429344.7:ENST00000585942.5:ENST00000248420.9:ENST00000221899.7:ENST00000587175.1:ENST00000589321.5:ENST00000588749.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	34	2	4.53023	4.654395	4.77856	0.0119748	0.00305743	0.0899583	0.0509893
chr19	42319916	42320016	7072857	0	+	0.51	(0.476,0.515]	chr19	707184	2	SS3_PROX	SS3_PROX:INTRON	TMEM145	ENSG00000167619.13	ENST00000301204.8:ENST00000673205.1:ENST00000673187.1:ENST00000598766.1	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.53023	4.654395	4.77856	0.0119748	0.00305743	0.0899583	0.0509893
chr2	218284865	218284964	1328639	0	-	0.50505	(0.476,0.515]	chr2	139090	2	INTRON	INTRON	TMBIM1	ENSG00000135926.15	ENST00000258412.8:ENST00000444881.5:ENST00000396809.6:ENST00000445635.5:ENST00000437694.6:ENST00000466012.5:ENST00000429501.5:ENST00000495113.5:ENST00000418569.5:ENST00000440422.5:ENST00000444183.5:ENST00000453776.5:ENST00000444000.5:ENST00000453281.5:ENST00000451181.5:ENST00000434015.2:ENST00000413976.1:ENST00000420341.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	34	2	4.53023	4.654395	4.77856	0.0119748	0.00305743	0.0899583	0.0509893
chr6	150867930	150868030	2997878	0	+	0.51	(0.476,0.515]	chr6	280472	9	INTRON	INTRON	MTHFD1L	ENSG00000120254.16	ENST00000611279.4:ENST00000367321.8:ENST00000367307.8:ENST00000367308.8:ENST00000618312.4:ENST00000441122.5:ENST00000423867.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	34	2	4.53023	4.654395	4.77856	0.0119748	0.00305743	0.0899583	0.0509893
chrX	139087216	139087316	7902438	0	-	0.49	(0.476,0.515]	chrX	804252	962	INTRON	INTRON	FGF13	ENSG00000129682.16	ENST00000441825.8:ENST00000626909.2:ENST00000436198.5:ENST00000448673.1:ENST00000421460.1	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.53023	4.654395	4.77856	0.0119748	0.00305743	0.0899583	0.0509893
chr11	46588525	46588625	4947205	0	-	0.49	(0.476,0.515]	chr11	463525	391	INTRON	INTRON	AMBRA1	ENSG00000110497.15	ENST00000683756.1:ENST00000534300.5:ENST00000533727.5:ENST00000314845.7:ENST00000458649.6:ENST00000528950.1:ENST00000531542.1:ENST00000526606.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	34	2	4.61519	4.654195	4.6932	0.00753088	0.00528365	0.074841	0.0656295
chr11	3928399	3928498	4724194	0	+	0.545455	(0.515,0.57]	chr11	437144	61	INTRON	INTRON	STIM1	ENSG00000167323.12	ENST00000525403.5:ENST00000526596.2:ENST00000300737.8:ENST00000616714.4:ENST00000527651.5:ENST00000532610.5:ENST00000532919.5:ENST00000530554.5:ENST00000524822.5:ENST00000528656.5:ENST00000525055.5	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.399	4.654059999999999	4.90912	0.00708863	0.0021669	0.0754923	0.0417866
chr20	49220951	49221051	7284338	0	+	0.56	(0.515,0.57]	chr20	740948	1	SS3_PROX	SS3_PROX:INTRON	DDX27	ENSG00000124228.15	ENST00000484427.5:ENST00000618172.5:ENST00000462328.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	33	2	4.399	4.654059999999999	4.90912	0.00708863	0.0021669	0.0754923	0.0417866
chr1	40402060	40402160	81728	0	+	0.28	[0,0.28]	chr1	10562	48	INTRON	INTRON	SMAP2	ENSG00000084070.12	ENST00000435168.6:ENST00000372718.8:ENST00000372708.5:ENST00000614549.4:ENST00000539317.2	protein_coding	protein_coding	protein_coding	protein_coding	1	87	2	3.60928	4.65397	5.69866	0.00175225	9.66382e-4	0.0376491	0.0285961
chr14	69659612	69659712	5776192	0	+	0.49	(0.476,0.515]	chr14	547310	5	INTRON	INTRON	SUSD6	ENSG00000100647.8	ENST00000342745.5:ENST00000556993.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	37	2	4.10113	4.653790000000001	5.20645	0.0226984	0.00136049	0.124921	0.0336321
chr11	76882942	76883042	4836993	0	+	0.44	(0.408,0.44]	chr11	451195	143	INTRON	INTRON	ACER3	ENSG00000078124.13	ENST00000679754.1:ENST00000534206.5:ENST00000679866.1:ENST00000680842.1:ENST00000681257.1:ENST00000681354.1:ENST00000681732.1:ENST00000680583.1:ENST00000532485.6:ENST00000681375.1:ENST00000681004.1:ENST00000525194.5:ENST00000525861.5:ENST00000530182.6:ENST00000531461.5:ENST00000681955.1:ENST00000681411.1:ENST00000679611.1:ENST00000679924.1:ENST00000526597.5:ENST00000681251.1:ENST00000530334.6:ENST00000533873.1:ENST00000531352.5:ENST00000278544.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	71	2	3.86808	4.65374	5.4394	6.50925e-4	1.49394e-4	0.0232863	0.0106137
chr18	21659256	21659343	6955207	0	-	0.436782	(0.408,0.44]	chr18	688063	2	CDS	CDS:UTR3:EXON_MRNA	ABHD3	ENSG00000158201.10	ENST00000289119.7:ENST00000580981.5:ENST00000578270.5:ENST00000577564.1:ENST00000577891.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	36	2	4.12187	4.653615	5.18536	0.0354689	6.17381e-4	0.137535	0.0223951
chr3	132454457	132454557	1504689	0	+	0.44	(0.408,0.44]	chr3	157437	3	SS5_PROX	SS5_PROX:INTRON	DNAJC13	ENSG00000138246.17	ENST00000260818.11:ENST00000650455.1:ENST00000486798.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	36	2	4.12187	4.653615	5.18536	0.0354689	6.17381e-4	0.137535	0.0223951
chr16	31180824	31180922	6340559	0	+	0.561224	(0.515,0.57]	chr16	608317	2	INTRON	INTRON	FUS	ENSG00000089280.19	ENST00000566605.5:ENST00000254108.12:ENST00000380244.7:ENST00000487045.6:ENST00000487509.6:ENST00000568685.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	257	2	4.16246	4.653315	5.14417	2.02374e-8	1.86068e-8	5.20305e-5	4.36606e-5
chrX	41208343	41208441	7645334	0	+	0.377551	(0.35,0.378]	chrX	782409	25	INTRON	INTRON	USP9X	ENSG00000124486.14	ENST00000324545.9:ENST00000378308.7:ENST00000487625.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	74	2	3.54186	4.65318	5.7645	8.14353e-4	2.7432e-4	0.02604	0.0151711
chr17	81889969	81890069	6850230	0	-	0.54	(0.515,0.57]	chr17	678419	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	ALYREF	ENSG00000183684.8	ENST00000505490.3:ENST00000512673.1:ENST00000511412.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	68	2	3.25412	4.65312	6.05212	0.00224554	1.09838e-5	0.0435144	0.00262193
chr1	19310035	19310134	387404	0	-	0.454545	(0.44,0.476]	chr1	46331	10	INTRON	INTRON	AKR7A2	ENSG00000053371.13	ENST00000235835.8:ENST00000330072.9:ENST00000489286.5:ENST00000492217.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	34	2	4.5227	4.652815	4.78293	0.0128818	0.00292033	0.0926667	0.0494641
chr16	18086993	18087093	6453503	0	-	0.45	(0.44,0.476]	chr16	621960	832	INTRON	INTRON	ENSG00000259929:ENSG00000260242	ENSG00000259929.5:ENSG00000260242.1	ENST00000567304.1:ENST00000563866.1	lncRNA	lncRNA	lncRNA	lncRNA	0	34	2	4.5227	4.652815	4.78293	0.0128818	0.00292033	0.0926667	0.0494641
chr19	10188049	10188148	7134811	0	-	0.464646	(0.44,0.476]	chr19	719261	36	INTRON	INTRON	DNMT1	ENSG00000130816.17	ENST00000340748.8:ENST00000359526.9:ENST00000592705.5:ENST00000679103.1:ENST00000677634.1:ENST00000676820.1:ENST00000677250.1:ENST00000677013.1:ENST00000677685.1:ENST00000676610.1:ENST00000678804.1:ENST00000679313.1:ENST00000677946.1:ENST00000586988.5:ENST00000588952.5:ENST00000588118.5:ENST00000592342.5:ENST00000592054.5:ENST00000586800.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	34	2	4.5227	4.652815	4.78293	0.0128818	0.00292033	0.0926667	0.0494641
chr8	23029002	23029102	3923539	0	-	0.47	(0.44,0.476]	chr8	359084	4	SS3_PROX	SS3_PROX:INTRON	TNFRSF10B	ENSG00000120889.13	ENST00000276431.9:ENST00000347739.3:ENST00000523504.5:ENST00000518531.5:ENST00000519910.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	34	2	4.5227	4.652815	4.78293	0.0128818	0.00292033	0.0926667	0.0494641
chr18	47146267	47146366	6967176	0	-	0.353535	(0.35,0.378]	chr18	689609	86	INTRON	INTRON	HDHD2:ENSG00000267228	ENSG00000167220.12:ENSG00000267228.7	ENST00000588183.5:ENST00000300605.11:ENST00000602459.6:ENST00000587841.5:ENST00000590815.5:ENST00000591480.5:ENST00000586546.5:ENST00000590481.5:ENST00000588940.5:ENST00000587388.5:ENST00000591268.1:ENST00000592591.1:ENST00000591671.1:ENST00000588705.1:ENST00000602926.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	35	2	4.48184	4.652805	4.82377	0.0191702	0.00325499	0.108861	0.0524329
chr2	97224405	97224505	832007	0	+	0.37	(0.35,0.378]	chr2	93222	2	SS3_PROX	SS3_PROX:INTRON	ANKRD36	ENSG00000135976.21	ENST00000420699.9:ENST00000652721.1:ENST00000461153.7:ENST00000421946.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	35	2	4.48184	4.652805	4.82377	0.0191702	0.00325499	0.108861	0.0524329
chr20	31741272	31741368	7253679	0	+	0.375	(0.35,0.378]	chr20	736725	13	INTRON	INTRON	TPX2	ENSG00000088325.16	ENST00000340513.4:ENST00000300403.11	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.48184	4.652805	4.82377	0.0191702	0.00325499	0.108861	0.0524329
chr8	38200451	38200550	3735318	0	+	0.363636	(0.35,0.378]	chr8	347049	73	INTRON	INTRON	BAG4	ENSG00000156735.11	ENST00000521282.1:ENST00000432471.6:ENST00000287322.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	35	2	4.48184	4.652805	4.82377	0.0191702	0.00325499	0.108861	0.0524329
chr11	71967587	71967687	4823914	0	+	0.46	(0.44,0.476]	chr11	449921	49	INTRON	INTRON	RNF121	ENSG00000137522.18	ENST00000530058.5:ENST00000530655.5:ENST00000393711.7:ENST00000533380.5:ENST00000393713.7:ENST00000361756.8:ENST00000490867.5:ENST00000528683.5:ENST00000526549.5:ENST00000525243.5:ENST00000530137.1:ENST00000526903.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	34	2	4.61954	4.65259	4.68564	0.00816201	0.00506805	0.0766625	0.0646039
chr16	29489205	29489303	6470445	0	-	0.44898	(0.44,0.476]	chr16	625108	3	INTRON	INTRON	ENSG00000288632:NPIPB12	ENSG00000288632.1:ENSG00000169203.17	ENST00000675579.1:ENST00000550665.5:ENST00000549733.5:ENST00000551448.5:ENST00000552123.1:ENST00000617311.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:nonsense_mediated_decay:lncRNA	0	34	2	4.61954	4.65259	4.68564	0.00816201	0.00506805	0.0766625	0.0646039
chr16	85281962	85282062	6412648	0	+	0.46	(0.44,0.476]	chr16	615455	967	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.61954	4.65259	4.68564	0.00816201	0.00506805	0.0766625	0.0646039
chr19	21757349	21757448	7159203	0	-	0.474747	(0.44,0.476]	chr19	723737	34	INTRON	INTRON	ZNF100	ENSG00000197020.12	ENST00000358296.11:ENST00000598026.1:ENST00000596452.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	34	2	4.61954	4.65259	4.68564	0.00816201	0.00506805	0.0766625	0.0646039
chr20	62305430	62305519	7298834	0	+	0.449438	(0.44,0.476]	chr20	742521	5	INTRON	INTRON	ADRM1	ENSG00000130706.13	ENST00000491935.5:ENST00000620230.4:ENST00000253003.7:ENST00000462554.2:ENST00000465805.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	34	2	4.61954	4.65259	4.68564	0.00816201	0.00506805	0.0766625	0.0646039
chr13	95793404	95793503	5518371	0	+	0.353535	(0.35,0.378]	chr13	527702	25	UTR3	UTR3:EXON_MRNA	DNAJC3	ENSG00000102580.15	ENST00000602402.6	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.58537	4.65245	4.71953	0.0103314	0.00703328	0.0850389	0.0754576
chr2	159609799	159609899	1252468	0	-	0.37	(0.35,0.378]	chr2	132736	536	INTRON	INTRON	BAZ2B	ENSG00000123636.19	ENST00000392782.5:ENST00000392783.7:ENST00000541068.6:ENST00000437839.5:ENST00000483316.1:ENST00000552327.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	35	2	4.58537	4.65245	4.71953	0.0103314	0.00703328	0.0850389	0.0754576
chr6	158254485	158254584	3018763	0	+	0.373737	(0.35,0.378]	chr6	281677	218	INTRON	INTRON	TULP4	ENSG00000130338.13	ENST00000620026.1	protein_coding	processed_transcript	protein_coding	processed_transcript	0	35	2	4.58537	4.65245	4.71953	0.0103314	0.00703328	0.0850389	0.0754576
chrX	135891953	135892052	7895484	0	-	0.363636	(0.35,0.378]	chrX	803847	30	INTRON	INTRON	CT45A10	ENSG00000269586.8	ENST00000682849.1	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.58537	4.65245	4.71953	0.0103314	0.00703328	0.0850389	0.0754576
chr1	39746290	39746389	79423	0	+	0.434343	(0.408,0.44]	chr1	10283	9	UTR3	UTR3:EXON_MRNA:INTRON	PPIE	ENSG00000084072.17	ENST00000324379.10:ENST00000356511.6:ENST00000495526.5:ENST00000482751.5:ENST00000372830.5:ENST00000372835.9:ENST00000470213.5:ENST00000497370.5:ENST00000474804.5:ENST00000475350.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	36	2	4.22447	4.652150000000001	5.07983	0.0161655	0.00247652	0.109464	0.0446195
chr1	246565725	246565825	680983	0	-	0.42	(0.408,0.44]	chr1	79830	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	TFB2M	ENSG00000162851.8	ENST00000366514.5	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.22447	4.652150000000001	5.07983	0.0161655	0.00247652	0.109464	0.0446195
chr12	113331324	113331424	5418569	0	-	0.41	(0.408,0.44]	chr12	517896	96	INTRON	INTRON	SLC8B1	ENSG00000089060.12	ENST00000552014.5:ENST00000202831.7:ENST00000680972.1:ENST00000546737.5:ENST00000553238.5:ENST00000551230.1:ENST00000548477.5:ENST00000549181.5:ENST00000549605.5:ENST00000552613.1:ENST00000548186.5:ENST00000549372.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	36	2	4.22447	4.652150000000001	5.07983	0.0161655	0.00247652	0.109464	0.0446195
chr2	135339364	135339464	1231576	0	-	0.43	(0.408,0.44]	chr2	131212	235	INTRON	INTRON	ZRANB3	ENSG00000121988.18	ENST00000264159.11:ENST00000401392.5:ENST00000536680.5:ENST00000403017.2:ENST00000452187.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	36	2	4.22447	4.652150000000001	5.07983	0.0161655	0.00247652	0.109464	0.0446195
chr17	36535601	36535701	6601814	0	+	0.47	(0.44,0.476]	chr17	642529	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	PIGW	ENSG00000277161.2	ENST00000614443.2:ENST00000619326.1:ENST00000620233.1	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	4.1054	4.652100000000001	5.1988	0.0220205	0.00151532	0.123836	0.0352794
chr1	92352397	92352497	161915	0	+	0.41	(0.408,0.44]	chr1	17497	61	INTRON	INTRON	RPAP2	ENSG00000122484.9	ENST00000610020.2:ENST00000477322.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	34	2	4.59979	4.6519449999999996	4.7041	0.0109537	0.00381677	0.0873034	0.0562562
chr11	70312115	70312215	4820826	0	+	0.43	(0.408,0.44]	chr11	449385	277	INTRON	INTRON	PPFIA1	ENSG00000131626.19	ENST00000253925.12:ENST00000389547.7:ENST00000532504.5:ENST00000530746.1:ENST00000532024.1:ENST00000648755.1:ENST00000644155.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	34	2	4.59979	4.6519449999999996	4.7041	0.0109537	0.00381677	0.0873034	0.0562562
chr12	123187198	123187298	5443591	0	-	0.41	(0.408,0.44]	chr12	520806	56	INTRON	INTRON	MPHOSPH9	ENSG00000051825.15	ENST00000606320.6:ENST00000541076.6:ENST00000545556.6:ENST00000302373.8:ENST00000539024.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	34	2	4.59979	4.6519449999999996	4.7041	0.0109537	0.00381677	0.0873034	0.0562562
chr15	76256034	76256134	6227779	0	-	0.42	(0.408,0.44]	chr15	594907	104	INTRON	INTRON	ETFA	ENSG00000140374.17	ENST00000690610.1:ENST00000557943.6:ENST00000692691.1:ENST00000688389.1:ENST00000687293.1:ENST00000691695.1:ENST00000685863.1:ENST00000689730.1:ENST00000687975.1:ENST00000693064.1:ENST00000688908.1:ENST00000691021.1:ENST00000433983.6:ENST00000267950.12:ENST00000685548.1:ENST00000565910.6:ENST00000688154.1:ENST00000560595.6:ENST00000560726.5:ENST00000559602.5:ENST00000560044.6:ENST00000559973.5:ENST00000559386.2:ENST00000560899.5:ENST00000685118.1:ENST00000688637.1:ENST00000559075.5:ENST00000689739.1:ENST00000691071.1:ENST00000560816.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	34	2	4.59979	4.6519449999999996	4.7041	0.0109537	0.00381677	0.0873034	0.0562562
chr5	131429991	131430082	2717077	0	-	0.417582	(0.408,0.44]	chr5	255434	4	INTRON	INTRON	RAPGEF6	ENSG00000158987.22	ENST00000509018.6:ENST00000671916.1:ENST00000512611.5:ENST00000507093.5:ENST00000296859.10:ENST00000627212.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	34	2	4.59979	4.6519449999999996	4.7041	0.0109537	0.00381677	0.0873034	0.0562562
chr6	88301791	88301890	3154168	0	-	0.424242	(0.408,0.44]	chr6	294139	24	INTRON	INTRON	ENSG00000234426	ENSG00000234426.3	ENST00000648572.1:ENST00000429137.1	lncRNA	lncRNA	lncRNA	lncRNA	0	34	2	4.59979	4.6519449999999996	4.7041	0.0109537	0.00381677	0.0873034	0.0562562
chr7	42924186	42924283	3523444	0	-	0.43299	(0.408,0.44]	chr7	328574	9	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	ENSG00000256646:PSMA2	ENSG00000256646.8:ENSG00000106588.12	ENST00000442788.5:ENST00000677234.1:ENST00000677660.1:ENST00000676779.1:ENST00000431882.4:ENST00000677768.1:ENST00000433579.1:ENST00000679247.1:ENST00000677581.1:ENST00000223321.9:ENST00000457444.6:ENST00000436986.5:ENST00000678407.1:ENST00000677578.1:ENST00000677139.1:ENST00000678034.1:ENST00000445517.1:ENST00000411875.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	34	2	4.59979	4.6519449999999996	4.7041	0.0109537	0.00381677	0.0873034	0.0562562
chr1	202378717	202378817	293059	0	+	0.5	(0.476,0.515]	chr1	33758	292	INTRON	INTRON	PPP1R12B	ENSG00000077157.22	ENST00000391959.5:ENST00000608999.6:ENST00000480184.5:ENST00000356764.6:ENST00000476364.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	35	2	4.24501	4.65174	5.05847	0.0247713	0.00108081	0.12011	0.0300133
chr16	50193333	50193433	6347948	0	+	0.5	(0.476,0.515]	chr16	609312	387	INTRON	INTRON	TENT4B	ENSG00000121274.14	ENST00000436909.8:ENST00000561678.7:ENST00000562717.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	35	2	4.24501	4.65174	5.05847	0.0247713	0.00108081	0.12011	0.0300133
chr18	12860524	12860620	6950504	0	-	0.489583	(0.476,0.515]	chr18	687603	9	INTRON	INTRON	PTPN2	ENSG00000175354.20	ENST00000327283.7:ENST00000591115.5:ENST00000353319.8:ENST00000309660.10:ENST00000646492.1:ENST00000645191.1:ENST00000645816.1:ENST00000591305.5:ENST00000592776.1:ENST00000589216.1:ENST00000592059.5:ENST00000589086.1:ENST00000643397.1:ENST00000644814.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	35	2	4.24501	4.65174	5.05847	0.0247713	0.00108081	0.12011	0.0300133
chr4	126434620	126434720	2235050	0	-	0.48	(0.476,0.515]	chr4	219000	4	SS5_PROX	SS5_PROX:INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1:ENST00000651327.1	lncRNA	lncRNA	lncRNA	lncRNA	0	35	2	4.24501	4.65174	5.05847	0.0247713	0.00108081	0.12011	0.0300133
chr16	1849847	1849947	6430125	0	-	0.28	[0,0.28]	chr16	618357	45	INTRON	INTRON	MEIOB	ENSG00000162039.17	ENST00000325962.9:ENST00000470044.5:ENST00000397344.7:ENST00000496541.6	protein_coding	protein_coding	protein_coding	protein_coding	1	87	2	3.41114	4.65164	5.89214	0.00211753	9.08725e-4	0.0425644	0.0278396
chr3	5137666	5137766	1353729	0	+	0.43	(0.408,0.44]	chr3	142361	87	INTRON	INTRON	ARL8B	ENSG00000134108.14	ENST00000429403.5:ENST00000256496.8:ENST00000455168.5:ENST00000444332.1:ENST00000419534.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	106	2	4.00704	4.65158	5.29612	0.00113523	2.46892e-6	0.0307488	9.98676e-4
chr1	37879884	37879984	425494	0	-	0.39	(0.378,0.408]	chr1	51575	4	SS5_PROX	SS5_PROX:INTRON	INPP5B	ENSG00000204084.13	ENST00000373023.6:ENST00000373024.8:ENST00000458109.6:ENST00000373027.5:ENST00000373026.5	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.31699	4.6514299999999995	4.98587	0.0250408	0.00152268	0.12011	0.0360297
chr22	37881742	37881841	7512025	0	+	0.383838	(0.378,0.408]	chr22	767214	37	EXON_LNCRNA	EXON_LNCRNA:INTRON	EIF3L:ENSG00000279738	ENSG00000100129.18:ENSG00000279738.1	ENST00000412331.6:ENST00000624234.3:ENST00000381683.10:ENST00000652021.1:ENST00000477256.5:ENST00000406934.5:ENST00000482600.5:ENST00000623726.1:ENST00000450376.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	0	35	2	4.31699	4.6514299999999995	4.98587	0.0250408	0.00152268	0.12011	0.0360297
chr22	40076373	40076473	7517163	0	+	0.38	(0.378,0.408]	chr22	768084	304	INTRON	INTRON	TNRC6B	ENSG00000100354.21	ENST00000301923.13:ENST00000441751.5:ENST00000402203.5	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.31699	4.6514299999999995	4.98587	0.0250408	0.00152268	0.12011	0.0360297
chr5	138175696	138175794	2731406	0	-	0.408163	(0.378,0.408]	chr5	257187	25	INTRON	INTRON	BRD8	ENSG00000112983.18	ENST00000254900.10:ENST00000402931.5:ENST00000230901.9:ENST00000454473.5:ENST00000418329.5:ENST00000441656.5:ENST00000411594.6:ENST00000512140.5:ENST00000428808.5:ENST00000432618.5:ENST00000425764.5:ENST00000450756.5:ENST00000515254.1:ENST00000430331.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	35	2	4.31699	4.6514299999999995	4.98587	0.0250408	0.00152268	0.12011	0.0360297
chr21	43023882	43023979	7412045	0	+	0.505155	(0.476,0.515]	chr21	755364	21	INTRON	INTRON	PKNOX1	ENSG00000160199.15	ENST00000432907.6:ENST00000291547.10:ENST00000560448.5:ENST00000607049.5:ENST00000557820.5:ENST00000474336.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	94	2	3.14363	4.651395	6.15916	4.25082e-4	1.89343e-5	0.018441	0.00354138
chr20	62331971	62332071	7361323	0	-	0.47	(0.44,0.476]	chr20	750960	2	SS5_PROX	SS5_PROX:INTRON	LAMA5	ENSG00000130702.15	ENST00000252999.7	protein_coding	protein_coding	protein_coding	protein_coding	2	96	2	3.60668	4.65138	5.69608	2.01872e-4	3.22849e-5	0.0129814	0.00453487
chr1	42292462	42292562	432007	0	-	0.3	(0.28,0.32]	chr1	52324	134	INTRON	INTRON	FOXJ3	ENSG00000198815.9	ENST00000372573.5:ENST00000372572.5:ENST00000361776.5:ENST00000545068.5:ENST00000361346.6:ENST00000445886.5	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	4.33765	4.651095	4.96454	0.039714	0.00344078	0.143072	0.0539802
chr12	116211656	116211755	5424888	0	-	0.30303	(0.28,0.32]	chr12	518271	305	INTRON	INTRON	MED13L	ENSG00000123066.9	ENST00000281928.9:ENST00000650226.1:ENST00000548743.2:ENST00000647567.1:ENST00000551197.2	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	4.33765	4.651095	4.96454	0.039714	0.00344078	0.143072	0.0539802
chr3	37079672	37079771	1655647	0	-	0.282828	(0.28,0.32]	chr3	169908	42	INTRON	INTRON	LRRFIP2	ENSG00000093167.18	ENST00000336686.9:ENST00000354379.8:ENST00000421276.6:ENST00000396428.6:ENST00000440230.5:ENST00000440742.2:ENST00000416425.5	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	4.33765	4.651095	4.96454	0.039714	0.00344078	0.143072	0.0539802
chr5	134605670	134605769	2727716	0	-	0.30303	(0.28,0.32]	chr5	256688	47	UTR3	UTR3:EXON_MRNA	SAR1B	ENSG00000152700.14	ENST00000402673.7	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	4.33765	4.651095	4.96454	0.039714	0.00344078	0.143072	0.0539802
chr1	161335872	161335972	234753	0	+	0.38	(0.378,0.408]	chr1	28276	70	INTRON	INTRON	SDHC	ENSG00000143252.16	ENST00000367975.7:ENST00000342751.8:ENST00000432287.6:ENST00000513009.5:ENST00000392169.6:ENST00000504963.5:ENST00000470743.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	35	2	4.42349	4.650555000000001	4.87762	0.00992961	0.00553849	0.0877296	0.0648867
chr14	96512974	96513074	5810273	0	+	0.4	(0.378,0.408]	chr14	550883	79	INTRON	INTRON	PAPOLA	ENSG00000090060.19	ENST00000554887.5:ENST00000618976.2:ENST00000216277.13:ENST00000553357.5:ENST00000553689.5:ENST00000557320.5:ENST00000554130.5:ENST00000557471.5:ENST00000556619.5:ENST00000392990.6:ENST00000555626.5:ENST00000556248.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	76	2	4.17973	4.650505	5.12128	0.00251746	2.85856e-5	0.0446195	0.00423319
chr12	11062194	11062294	5268416	0	-	0.32	(0.28,0.32]	chr12	502250	1	CDS_START	CDS_START:CDS:EXON_MRNA:INTRON	ENSG00000275778:PRH1:TAS2R46	ENSG00000275778.2:ENSG00000231887.8:ENSG00000226761.3	ENST00000536668.2:ENST00000535024.6:ENST00000541977.5:ENST00000546265.1:ENST00000533467.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	37	2	4.4334	4.650354999999999	4.86731	0.0163355	0.0116253	0.109464	0.0889104
chr3	99824741	99824841	1461969	0	+	0.32	(0.28,0.32]	chr3	153488	63	INTRON	INTRON	CMSS1	ENSG00000184220.12	ENST00000463526.1:ENST00000421999.8:ENST00000491299.5:ENST00000496116.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	37	2	4.4334	4.650354999999999	4.86731	0.0163355	0.0116253	0.109464	0.0889104
chr4	106231134	106231228	2220754	0	-	0.308511	(0.28,0.32]	chr4	217437	3	INTRON	INTRON	TBCK	ENSG00000145348.17	ENST00000273980.10:ENST00000394708.7:ENST00000510927.5:ENST00000361687.8:ENST00000394706.7:ENST00000467183.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	37	2	4.4334	4.650354999999999	4.86731	0.0163355	0.0116253	0.109464	0.0889104
chr16	68212247	68212346	6371510	0	+	0.333333	(0.32,0.35]	chr16	612252	26	INTRON	INTRON	NFATC3	ENSG00000072736.19	ENST00000563319.5:ENST00000569766.5:ENST00000566301.5:ENST00000575270.5:ENST00000346183.8:ENST00000349223.9:ENST00000329524.8:ENST00000562926.5:ENST00000570212.5:ENST00000563796.5:ENST00000567152.5:ENST00000563288.5:ENST00000535127.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	36	2	4.46758	4.650225	4.83287	0.0119306	0.0095071	0.0962115	0.0817766
chr10	31836931	31837030	4589395	0	-	0.454545	(0.44,0.476]	chr10	423129	48	INTRON	INTRON	ARHGAP12	ENSG00000165322.18	ENST00000344936.7:ENST00000375245.8:ENST00000396144.8:ENST00000375250.9:ENST00000311380.8:ENST00000497103.1:ENST00000454919.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	35	2	4.23755	4.650214999999999	5.06288	0.0263357	0.00102416	0.122221	0.0294041
chr3	16281865	16281964	1375045	0	+	0.313131	(0.28,0.32]	chr3	144974	92	INTRON	INTRON	OXNAD1	ENSG00000154814.14	ENST00000627468.2:ENST00000605932.5:ENST00000442255.5:ENST00000435829.6:ENST00000285083.10:ENST00000452581.5:ENST00000606098.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	83	2	3.22074	4.65013	6.07952	0.00362783	1.93993e-4	0.055479	0.0127226
chr1	180018157	180018256	268084	0	+	0.414141	(0.408,0.44]	chr1	31361	18	INTRON	INTRON	CEP350	ENSG00000135837.16	ENST00000367607.8	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.51604	4.649760000000001	4.78348	0.0137419	0.00290352	0.0949306	0.0494641
chr10	63335091	63335191	4634081	0	-	0.44	(0.408,0.44]	chr10	426226	660	INTRON	INTRON	JMJD1C	ENSG00000171988.20	ENST00000399262.7:ENST00000633035.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	34	2	4.51604	4.649760000000001	4.78348	0.0137419	0.00290352	0.0949306	0.0494641
chr19	10785965	10786063	7014460	0	+	0.428571	(0.408,0.44]	chr19	696972	25	INTRON	INTRON	DNM2	ENSG00000079805.19	ENST00000683738.1:ENST00000682285.1:ENST00000682524.1:ENST00000355667.11:ENST00000389253.9:ENST00000585892.5:ENST00000359692.10:ENST00000408974.8:ENST00000591701.5:ENST00000587485.1:ENST00000587830.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	34	2	4.51604	4.649760000000001	4.78348	0.0137419	0.00290352	0.0949306	0.0494641
chr20	32151668	32151766	7254742	0	+	0.428571	(0.408,0.44]	chr20	736904	4	INTRON	INTRON	TM9SF4	ENSG00000101337.16	ENST00000398022.7:ENST00000217315.9	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.51604	4.649760000000001	4.78348	0.0137419	0.00290352	0.0949306	0.0494641
chr3	33065262	33065362	1650839	0	-	0.42	(0.408,0.44]	chr3	169270	4	SS5_PROX	SS5_PROX:INTRON	GLB1	ENSG00000170266.16	ENST00000399402.7:ENST00000307363.10:ENST00000307377.12:ENST00000482097.5:ENST00000485698.5:ENST00000498537.5:ENST00000415454.1:ENST00000446732.5:ENST00000438227.1:ENST00000440656.1:ENST00000464355.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	34	2	4.51604	4.649760000000001	4.78348	0.0137419	0.00290352	0.0949306	0.0494641
chr1	201830967	201831067	291770	0	+	0.41	(0.408,0.44]	chr1	33518	12	INTRON	INTRON	IPO9	ENSG00000198700.10	ENST00000464348.5:ENST00000361565.9	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	34	2	4.62009	4.649515	4.67894	0.0087648	0.00504155	0.0788605	0.0646039
chr3	187064916	187065016	1587540	0	+	0.43	(0.408,0.44]	chr3	164404	3	SS5_PROX	SS5_PROX:INTRON	ST6GAL1	ENSG00000073849.16	ENST00000169298.8:ENST00000457772.6:ENST00000455441.5:ENST00000427315.5:ENST00000677292.1:ENST00000676633.1:ENST00000448044.5:ENST00000416235.6:ENST00000448449.1:ENST00000442023.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	34	2	4.62009	4.649515	4.67894	0.0087648	0.00504155	0.0788605	0.0646039
chr6	17888294	17888394	3067557	0	-	0.41	(0.408,0.44]	chr6	285094	145	INTRON	INTRON	KIF13A	ENSG00000137177.20	ENST00000378814.9:ENST00000259711.11:ENST00000378826.6:ENST00000378843.6:ENST00000636847.1:ENST00000507576.1:ENST00000505588.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	34	2	4.62009	4.649515	4.67894	0.0087648	0.00504155	0.0788605	0.0646039
chrX	107095527	107095627	7859411	0	-	0.44	(0.408,0.44]	chrX	801235	63	INTRON	INTRON	RBM41	ENSG00000089682.17	ENST00000685964.1:ENST00000372487.5:ENST00000495517.5:ENST00000372479.7:ENST00000434854.1:ENST00000475556.1:ENST00000485676.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	34	2	4.62009	4.649515	4.67894	0.0087648	0.00504155	0.0788605	0.0646039
chr20	49278888	49278939	7284604	0	+	0.588235	(0.57,1]	chr20	741048	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ZFAS1	ENSG00000177410.13	ENST00000371743.8:ENST00000417721.5:ENST00000441722.5:ENST00000450535.5:ENST00000458653.5:ENST00000428008.6:ENST00000620594.2:ENST00000652916.1:ENST00000326677.9:ENST00000667889.1:ENST00000663883.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	0	28	2	4.16881	4.649509999999999	5.13021	0.00574776	1.21664e-4	0.0681402	0.00992813
chr1	246922362	246922462	681867	0	-	0.39	(0.378,0.408]	chr1	80043	36	INTRON	INTRON	AHCTF1	ENSG00000153207.16	ENST00000648844.2:ENST00000326225.3:ENST00000366508.5	protein_coding	protein_coding	protein_coding	protein_coding	1	73	2	3.3797	4.649275	5.91885	0.00154501	1.02858e-4	0.0362716	0.00915589
chr1	45685815	45685911	440581	0	-	0.458333	(0.44,0.476]	chr1	53366	2	SS3_PROX	SS3_PROX:INTRON	GPBP1L1	ENSG00000159592.11	ENST00000290795.7:ENST00000355105.8:ENST00000488278.5:ENST00000480941.1:ENST00000480083.5:ENST00000493083.5:ENST00000460859.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	35	2	4.33346	4.649184999999999	4.96491	0.0120349	0.0034249	0.0962115	0.0517761
chr12	6572429	6572529	5259262	0	-	0.47	(0.44,0.476]	chr12	500672	1	SS5_PROX	SS5_PROX:INTRON	CHD4	ENSG00000111642.16	ENST00000645022.1:ENST00000544040.7:ENST00000544484.6:ENST00000357008.7:ENST00000647112.1:ENST00000642810.1:ENST00000642637.1:ENST00000642686.1:ENST00000645143.1:ENST00000647394.1:ENST00000643335.1:ENST00000643815.1:ENST00000647535.1:ENST00000646806.1:ENST00000644137.1:ENST00000642879.1:ENST00000646462.1:ENST00000644652.1:ENST00000645645.1:ENST00000642594.1:ENST00000646360.1:ENST00000646268.1:ENST00000645095.1:ENST00000644352.1:ENST00000645991.1:ENST00000642860.1:ENST00000647483.1:ENST00000646608.1:ENST00000644077.1:ENST00000643538.1:ENST00000645005.1:ENST00000645199.1:ENST00000642893.1:ENST00000643367.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	35	2	4.33346	4.649184999999999	4.96491	0.0120349	0.0034249	0.0962115	0.0517761
chr14	54965878	54965974	5899419	0	-	0.447917	(0.44,0.476]	chr14	560278	24	INTRON	INTRON	WDHD1	ENSG00000198554.12	ENST00000360586.8:ENST00000420358.2:ENST00000567693.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	35	2	4.33346	4.649184999999999	4.96491	0.0120349	0.0034249	0.0962115	0.0517761
chr14	67941826	67941926	5766594	0	+	0.45	(0.44,0.476]	chr14	547062	326	INTRON	INTRON	RAD51B	ENSG00000182185.19	ENST00000487861.5:ENST00000471583.6:ENST00000479335.5:ENST00000487270.5:ENST00000488612.5:ENST00000553595.5:ENST00000497460.5:ENST00000492236.5:ENST00000554244.5:ENST00000478014.5:ENST00000469165.6:ENST00000460526.5:ENST00000468382.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	35	2	4.33346	4.649184999999999	4.96491	0.0120349	0.0034249	0.0962115	0.0517761
chr1	77673189	77673288	493369	0	-	0.272727	[0,0.28]	chr1	58315	312	INTRON	INTRON	ZZZ3	ENSG00000036549.13	ENST00000370801.8:ENST00000370798.5:ENST00000433749.5:ENST00000414381.5:ENST00000463166.5:ENST00000469944.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	40	2	4.1879	4.649115	5.11033	0.0396579	0.00991388	0.161534	0.0838372
chr1	90949195	90949295	501797	0	-	0.2	[0,0.28]	chr1	59492	75	INTRON	INTRON	ZNF644	ENSG00000122482.22	ENST00000370440.5:ENST00000337393.10:ENST00000347275.9:ENST00000361321.5:ENST00000467231.5:ENST00000498303.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	40	2	4.1879	4.649115	5.11033	0.0396579	0.00991388	0.161534	0.0838372
chr1	212774971	212775071	634612	0	-	0.18	[0,0.28]	chr1	74955	83	INTRON	INTRON	NSL1	ENSG00000117697.15	ENST00000366977.8:ENST00000366978.5:ENST00000366976.3:ENST00000626725.1	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.38387	4.649005	4.91414	0.0501911	0.0064519	0.156383	0.0730725
chr15	49147666	49147765	6167749	0	-	0.272727	[0,0.28]	chr15	587899	22	INTRON	INTRON	COPS2	ENSG00000166200.15	ENST00000388901.10:ENST00000299259.10:ENST00000542928.5:ENST00000558843.5:ENST00000561248.1:ENST00000558545.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	38	2	4.38387	4.649005	4.91414	0.0501911	0.0064519	0.156383	0.0730725
chr18	49235711	49235811	6970732	0	-	0.28	[0,0.28]	chr18	689779	256	INTRON	INTRON	DYM	ENSG00000141627.14	ENST00000675505.1:ENST00000269445.10:ENST00000442713.6	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.38387	4.649005	4.91414	0.0501911	0.0064519	0.156383	0.0730725
chr3	15772084	15772184	1623561	0	-	0.26	[0,0.28]	chr3	168009	54	INTRON	INTRON	ANKRD28	ENSG00000206560.12	ENST00000399451.6:ENST00000624145.3:ENST00000683139.1:ENST00000412318.5:ENST00000497037.5:ENST00000451422.1:ENST00000498524.5:ENST00000439830.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	38	2	4.38387	4.649005	4.91414	0.0501911	0.0064519	0.156383	0.0730725
chr8	25455214	25455313	3926319	0	-	0.181818	[0,0.28]	chr8	359463	33	INTRON	INTRON	KCTD9	ENSG00000104756.16	ENST00000221200.9:ENST00000519665.5:ENST00000523140.5:ENST00000522493.5:ENST00000518067.5:ENST00000518997.5:ENST00000523294.5:ENST00000521458.5:ENST00000524217.1:ENST00000517914.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	38	2	4.38387	4.649005	4.91414	0.0501911	0.0064519	0.156383	0.0730725
chr8	67114234	67114328	3777142	0	+	0.202128	[0,0.28]	chr8	350328	5	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CSPP1	ENSG00000104218.16	ENST00000676113.1:ENST00000675306.2:ENST00000678156.1:ENST00000262210.11:ENST00000678017.1:ENST00000675869.1:ENST00000678542.1:ENST00000677619.1:ENST00000676605.1:ENST00000676471.1:ENST00000677256.1:ENST00000676847.1:ENST00000677009.1:ENST00000675820.1:ENST00000676317.1:ENST00000677592.1:ENST00000676573.1:ENST00000678318.1:ENST00000677473.1:ENST00000674993.1:ENST00000678553.1:ENST00000678204.1:ENST00000679226.1:ENST00000676882.1:ENST00000675955.1:ENST00000678728.1:ENST00000677430.1:ENST00000677455.1:ENST00000678616.1:ENST00000678362.1:ENST00000679112.1:ENST00000678645.1:ENST00000676567.1:ENST00000677845.1:ENST00000519163.6:ENST00000676858.1:ENST00000678747.1:ENST00000678821.1:ENST00000519668.1:ENST00000676697.1:ENST00000678216.1:ENST00000677855.1:ENST00000676695.1:ENST00000677836.1:ENST00000677070.1:ENST00000678444.1:ENST00000676534.1:ENST00000678138.1:ENST00000678807.1:ENST00000677052.1:ENST00000679274.1:ENST00000679042.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	38	2	4.38387	4.649005	4.91414	0.0501911	0.0064519	0.156383	0.0730725
chrX	18240281	18240377	7769894	0	-	0.229167	[0,0.28]	chrX	794120	11	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	SCML2	ENSG00000102098.19	ENST00000251900.9:ENST00000420857.6:ENST00000398048.4:ENST00000491988.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	38	2	4.38387	4.649005	4.91414	0.0501911	0.0064519	0.156383	0.0730725
chr3	179603934	179604026	1879069	0	-	0.271739	[0,0.28]	chr3	187744	8	INTRON	INTRON	MRPL47	ENSG00000136522.14	ENST00000476781.6:ENST00000259038.6:ENST00000392659.2	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.47254	4.648435	4.82433	0.020991	0.0200334	0.122348	0.109608
chr5	79644435	79644528	2399056	0	+	0.182796	[0,0.28]	chr5	231723	12	INTRON	INTRON	TENT2	ENSG00000164329.14	ENST00000423041.6:ENST00000504233.5:ENST00000453514.6:ENST00000428308.6:ENST00000296783.7	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.47254	4.648435	4.82433	0.020991	0.0200334	0.122348	0.109608
chr1	215618335	215618427	314704	0	+	0.326087	(0.32,0.35]	chr1	36279	2	EXON_LNCRNA	EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	KCTD3	ENSG00000136636.13	ENST00000259154.9:ENST00000452413.1:ENST00000495537.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	83	2	3.42026	4.64827	5.87628	0.00219805	5.28936e-5	0.0417893	0.00592337
chr4	48856352	48856448	1958477	0	+	0.333333	(0.32,0.35]	chr4	196255	5	EXON_MRNA	EXON_MRNA:INTRON	OCIAD1	ENSG00000109180.15	ENST00000509122.5:ENST00000505922.6:ENST00000396448.6:ENST00000381473.7:ENST00000264312.12:ENST00000444354.6:ENST00000506801.5:ENST00000503016.5:ENST00000425583.6:ENST00000508293.5:ENST00000513391.2:ENST00000508329.1:ENST00000502972.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	83	2	3.42026	4.64827	5.87628	0.00219805	5.28936e-5	0.0417893	0.00592337
chr2	241237659	241237757	1347743	0	-	0.346939	(0.32,0.35]	chr2	141514	5	INTRON	INTRON	HDLBP	ENSG00000115677.18	ENST00000391975.5:ENST00000427183.6:ENST00000310931.10:ENST00000391976.6:ENST00000373292.8:ENST00000487169.5:ENST00000483086.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	38	2	4.06299	4.64813	5.23327	0.0559439	9.33826e-4	0.165463	0.0278746
chr4	159145186	159145286	2073921	0	+	0.35	(0.32,0.35]	chr4	205172	406	INTRON	INTRON	RAPGEF2	ENSG00000109756.10	ENST00000644474.1:ENST00000691494.1:ENST00000505478.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	38	2	4.06299	4.64813	5.23327	0.0559439	9.33826e-4	0.165463	0.0278746
chr4	1698389	1698485	2095082	0	-	0.34375	(0.32,0.35]	chr4	207204	17	INTRON	INTRON	SLBP	ENSG00000163950.13	ENST00000489418.6:ENST00000429429.6:ENST00000318386.8:ENST00000483348.5:ENST00000488267.5:ENST00000480936.1	protein_coding	protein_coding	protein_coding	protein_coding	2	106	2	3.59372	4.64806	5.7024	5.25722e-4	4.81573e-5	0.0210958	0.00566695
chr9	86000917	86001016	4149539	0	+	0.363636	(0.35,0.378]	chr9	378467	40	INTRON	INTRON	NAA35	ENSG00000135040.16	ENST00000361671.10	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	4.08816	4.647795	5.20743	0.046021	7.78116e-4	0.149888	0.0256531
chr12	48104204	48104304	5318440	0	-	0.51	(0.476,0.515]	chr12	506217	23	INTRON	INTRON	SENP1	ENSG00000079387.14	ENST00000549518.6:ENST00000552189.5:ENST00000448372.5:ENST00000551798.1:ENST00000547181.5:ENST00000549882.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	34	2	4.44128	4.6475349999999995	4.85379	0.0151924	0.00234214	0.0994339	0.0442989
chr15	42514045	42514144	6009792	0	+	0.484848	(0.476,0.515]	chr15	572166	2	INTRON	INTRON	SNAP23	ENSG00000092531.10	ENST00000561526.5:ENST00000568451.5:ENST00000563765.5:ENST00000349777.5:ENST00000249647.8:ENST00000564153.5:ENST00000567094.5:ENST00000566327.5:ENST00000568331.5:ENST00000566035.5:ENST00000568859.5:ENST00000568514.5:ENST00000397138.5:ENST00000563873.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	34	2	4.44128	4.6475349999999995	4.85379	0.0151924	0.00234214	0.0994339	0.0442989
chr17	75231037	75231137	6674534	0	+	0.51	(0.476,0.515]	chr17	651409	3	SS3_PROX	SS3_PROX:INTRON	NUP85	ENSG00000125450.11	ENST00000245544.9:ENST00000579324.5:ENST00000581104.5:ENST00000579298.5:ENST00000578830.5:ENST00000579557.5:ENST00000577645.5:ENST00000583070.5:ENST00000580879.5:ENST00000540768.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	34	2	4.44128	4.6475349999999995	4.85379	0.0151924	0.00234214	0.0994339	0.0442989
chr21	34095395	34095493	7401312	0	+	0.510204	(0.476,0.515]	chr21	753972	2	CDS	CDS:EXON_MRNA:INTRON	MRPS6:SLC5A3	ENSG00000243927.6:ENSG00000198743.7	ENST00000488492.5:ENST00000477091.5:ENST00000399312.3:ENST00000381151.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	34	2	4.44128	4.6475349999999995	4.85379	0.0151924	0.00234214	0.0994339	0.0442989
chr16	58554850	58554950	6495605	0	-	0.51	(0.476,0.515]	chr16	628529	2	SS5_PROX	SS5_PROX:INTRON	CNOT1	ENSG00000125107.19	ENST00000317147.10:ENST00000569240.5:ENST00000567188.5:ENST00000441024.6:ENST00000569732.1:ENST00000562046.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	74	2	4.14319	4.64731	5.15143	0.00166579	3.39012e-5	0.0369207	0.0046443
chr10	117367364	117367464	4702627	0	-	0.44	(0.408,0.44]	chr10	433752	259	INTRON	INTRON	PDZD8	ENSG00000165650.12	ENST00000334464.7:ENST00000489491.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	35	2	4.23096	4.647195	5.06343	0.0278028	0.00101725	0.123904	0.0293497
chrX	154042795	154042895	7912542	0	-	0.42	(0.408,0.44]	chrX	805608	25	INTRON	INTRON	MECP2	ENSG00000169057.24	ENST00000303391.11:ENST00000453960.7:ENST00000628176.2:ENST00000407218.5:ENST00000486506.5:ENST00000369957.5:ENST00000631210.1:ENST00000496908.5:ENST00000415944.3:ENST00000460227.4:ENST00000463644.5:ENST00000488293.4:ENST00000630151.2:ENST00000676382.1:ENST00000611468.2:ENST00000637533.1:ENST00000675526.1:ENST00000637791.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	35	2	4.23096	4.647195	5.06343	0.0278028	0.00101725	0.123904	0.0293497
chr10	58392758	58392858	4435697	0	+	0.49	(0.476,0.515]	chr10	409149	15	INTRON	INTRON	TFAM	ENSG00000108064.11	ENST00000373899.3:ENST00000487519.6:ENST00000373895.7:ENST00000395377.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	34	2	4.526	4.6471350000000005	4.76827	0.00699701	0.00600704	0.0754576	0.0674604
chr16	24068114	24068214	6326087	0	+	0.5	(0.476,0.515]	chr16	605723	322	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000498739.1:ENST00000647422.1:ENST00000486868.1:ENST00000482000.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	34	2	4.526	4.6471350000000005	4.76827	0.00699701	0.00600704	0.0754576	0.0674604
chr19	8451606	8451706	7010830	0	+	0.48	(0.476,0.515]	chr19	696137	61	INTRON	INTRON	HNRNPM	ENSG00000099783.12	ENST00000348943.7:ENST00000597813.5:ENST00000600092.5:ENST00000325495.9:ENST00000600806.5:ENST00000620401.4:ENST00000594907.5:ENST00000596984.5:ENST00000601645.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	34	2	4.526	4.6471350000000005	4.76827	0.00699701	0.00600704	0.0754576	0.0674604
chr2	38591748	38591848	1099666	0	-	0.49	(0.476,0.515]	chr2	117956	1	SS3_PROX	SS3_PROX:INTRON	HNRNPLL	ENSG00000143889.16	ENST00000449105.8:ENST00000409636.5:ENST00000358367.8:ENST00000608859.5:ENST00000378915.7:ENST00000409328.5:ENST00000410076.5:ENST00000425682.1:ENST00000498516.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	34	2	4.526	4.6471350000000005	4.76827	0.00699701	0.00600704	0.0754576	0.0674604
chrX	74245672	74245770	7841132	0	-	0.5	(0.476,0.515]	chrX	799716	7	EXON_LNCRNA	EXON_LNCRNA:INTRON	FTX	ENSG00000230590.12	ENST00000603672.5:ENST00000430772.6:ENST00000602776.6:ENST00000638681.1:ENST00000652319.1:ENST00000661133.1:ENST00000652071.1:ENST00000602812.6:ENST00000651703.1:ENST00000653018.1:ENST00000658448.1:ENST00000662240.1:ENST00000652527.1:ENST00000651451.1:ENST00000657611.1:ENST00000660481.1:ENST00000659574.1:ENST00000661084.1:ENST00000662494.1:ENST00000670936.1:ENST00000602420.6:ENST00000658203.1:ENST00000638985.1:ENST00000691187.1:ENST00000603037.2:ENST00000687056.1:ENST00000654870.2:ENST00000652540.1:ENST00000652331.2:ENST00000652013.1:ENST00000669263.1:ENST00000657070.1:ENST00000665069.1:ENST00000651936.1:ENST00000652496.1:ENST00000653874.2:ENST00000661335.1:ENST00000664123.1:ENST00000658439.1:ENST00000666535.1:ENST00000652970.1:ENST00000423992.3:ENST00000665313.2:ENST00000651140.1:ENST00000660100.1:ENST00000693483.1:ENST00000656041.1:ENST00000657327.1	lncRNA	lncRNA	lncRNA	lncRNA	0	34	2	4.526	4.6471350000000005	4.76827	0.00699701	0.00600704	0.0754576	0.0674604
chr6	97275456	97275556	3164698	0	-	0.49	(0.476,0.515]	chr6	295147	20	INTRON	INTRON	MMS22L	ENSG00000146263.12	ENST00000683635.1:ENST00000275053.8:ENST00000369251.6:ENST00000509383.5:ENST00000510018.5:ENST00000508976.5:ENST00000508820.1:ENST00000496119.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	75	2	3.70882	4.647135	5.58545	4.74495e-4	1.04881e-4	0.0201638	0.00863456
chr8	37887495	37887595	3935825	0	-	0.4	(0.378,0.408]	chr8	360576	95	INTRON	INTRON	RAB11FIP1	ENSG00000156675.16	ENST00000330843.9:ENST00000287263.8:ENST00000522727.5	protein_coding	protein_coding	protein_coding	protein_coding	3	125	2	2.66588	4.64696	6.62804	0.00156732	2.6325e-7	0.0360728	2.52144e-4
chr1	184066223	184066323	274964	0	+	0.28	[0,0.28]	chr1	32204	76	INTRON	INTRON	TSEN15	ENSG00000198860.14	ENST00000423085.7:ENST00000361641.6:ENST00000485209.6:ENST00000643231.1:ENST00000533373.6:ENST00000647437.1:ENST00000647465.1:ENST00000367518.4:ENST00000643916.1:ENST00000645668.2:ENST00000644145.1:ENST00000644592.1:ENST00000646297.2:ENST00000645963.2:ENST00000644479.1:ENST00000462677.3:ENST00000643702.1:ENST00000644815.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	39	2	4.20106	4.646935	5.09281	0.0695895	0.00372534	0.184298	0.0561984
chr10	5704533	5704633	4384541	0	+	0.24	[0,0.28]	chr10	404466	44	INTRON	INTRON	TASOR2	ENSG00000108021.21	ENST00000695832.1:ENST00000328090.9:ENST00000695737.1:ENST00000695833.1:ENST00000695834.1:ENST00000695835.1:ENST00000695836.1:ENST00000473789.5:ENST00000477043.5:ENST00000496681.5:ENST00000480839.6:ENST00000645567.1:ENST00000482419.1:ENST00000463468.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	39	2	4.20106	4.646935	5.09281	0.0695895	0.00372534	0.184298	0.0561984
chr6	37975293	37975393	2858589	0	+	0.21	[0,0.28]	chr6	270231	449	INTRON	INTRON	ZFAND3	ENSG00000156639.12	ENST00000287218.9:ENST00000373391.6:ENST00000474522.5:ENST00000373389.5	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	4.20106	4.646935	5.09281	0.0695895	0.00372534	0.184298	0.0561984
chr6	75631098	75631197	2905239	0	+	0.252525	[0,0.28]	chr6	274500	68	INTRON	INTRON	SENP6	ENSG00000112701.18	ENST00000370010.6:ENST00000447266.7:ENST00000327284.12:ENST00000493959.6:ENST00000483859.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	39	2	4.20106	4.646935	5.09281	0.0695895	0.00372534	0.184298	0.0561984
chr11	14475015	14475115	4918069	0	-	0.47	(0.44,0.476]	chr11	460900	4	SS3_PROX	SS3_PROX:INTRON	COPB1	ENSG00000129083.13	ENST00000249923.7:ENST00000439561.7:ENST00000526191.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	70	2	3.71727	4.64691	5.57655	3.3967e-4	3.2089e-4	0.0170719	0.0159645
chr15	101289139	101289226	6269983	0	-	0.367816	(0.35,0.378]	chr15	598012	6	INTRON	INTRON	SNRPA1	ENSG00000131876.18	ENST00000254193.11:ENST00000558036.5:ENST00000559309.5:ENST00000394082.8:ENST00000540017.6:ENST00000560496.5:ENST00000560383.5:ENST00000558059.5:ENST00000560987.5:ENST00000560856.5:ENST00000558020.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	80	2	3.25549	4.646725	6.03796	0.00363602	1.46604e-5	0.0535085	0.00286704
chr1	92704145	92704237	507357	0	-	0.445652	(0.44,0.476]	chr1	59872	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	EVI5	ENSG00000067208.16	ENST00000370331.5:ENST00000540033.2:ENST00000684568.2:ENST00000474806.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	75	2	3.35227	4.64656	5.94085	0.0022005699999999998	1.53199e-5	0.0417893	0.00293868
chr3	160448283	160448342	1849855	0	-	0.322034	(0.32,0.35]	chr3	186030	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ENSG00000248710:TRIM59	ENSG00000248710.1:ENSG00000213186.8	ENST00000483754.1:ENST00000543469.1:ENST00000309784.9:ENST00000479460.5:ENST00000471396.1:ENST00000496222.1:ENST00000471155.5:ENST00000494486.1:ENST00000468542.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	38	2	4.16186	4.646545	5.13123	0.026079	0.00394704	0.133676	0.0548259
chr1	155783585	155783685	563698	0	-	0.35	(0.32,0.35]	chr1	67311	2	SS5_PROX	SS5_PROX:INTRON	GON4L	ENSG00000116580.20	ENST00000368331.6:ENST00000615926.4:ENST00000437809.5:ENST00000271883.9:ENST00000361040.9:ENST00000622608.2:ENST00000471341.5:ENST00000482386.5:ENST00000466224.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	37	2	4.17181	4.6464	5.12099	0.04531	0.00143632	0.149888	0.0347139
chr1	108951032	108951131	519052	0	-	0.40404	(0.378,0.408]	chr1	60921	7	UTR5	UTR5:EXON_MRNA:INTRON	CLCC1	ENSG00000121940.17	ENST00000690509.1:ENST00000687328.1:ENST00000685014.1:ENST00000685540.1:ENST00000686576.1:ENST00000688070.1:ENST00000691513.1:ENST00000686821.1:ENST00000692511.1:ENST00000689479.1:ENST00000687646.1:ENST00000687998.1:ENST00000687226.1:ENST00000693336.1:ENST00000689991.1:ENST00000687591.1:ENST00000691777.1:ENST00000690756.1:ENST00000688778.1:ENST00000685104.1:ENST00000689103.1:ENST00000687734.1:ENST00000686434.1:ENST00000685497.1:ENST00000691342.1:ENST00000686776.1:ENST00000692342.1:ENST00000689351.1:ENST00000692584.1:ENST00000692775.1:ENST00000687134.1:ENST00000675018.1:ENST00000690781.1:ENST00000691556.1:ENST00000689189.1:ENST00000687099.1:ENST00000685791.1:ENST00000687865.1:ENST00000687449.1:ENST00000688285.1:ENST00000686817.1:ENST00000369968.7:ENST00000674992.1:ENST00000675001.1:ENST00000369969.7:ENST00000356970.6:ENST00000688610.1:ENST00000675128.1:ENST00000693089.1:ENST00000675571.1:ENST00000675650.1:ENST00000369970.8:ENST00000674561.2:ENST00000675451.1:ENST00000675654.1:ENST00000675790.1:ENST00000675584.1:ENST00000692795.1:ENST00000691731.1:ENST00000689359.1:ENST00000676392.2:ENST00000676391.2:ENST00000676454.1:ENST00000674849.1:ENST00000675956.1:ENST00000302500.5:ENST00000675508.1:ENST00000688168.1:ENST00000693673.1:ENST00000692404.1:ENST00000686078.1:ENST00000690874.1:ENST00000692732.1:ENST00000685628.1:ENST00000676306.1:ENST00000676059.2:ENST00000674527.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	77	2	3.39872	4.646205	5.89369	0.0019852	2.33849e-5	0.0404516	0.00378116
chr15	42993002	42993101	6159525	0	-	0.444444	(0.44,0.476]	chr15	586395	25	INTRON	INTRON	UBR1	ENSG00000159459.12	ENST00000290650.9:ENST00000566493.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	34	2	4.43377	4.64597	4.85817	0.0162803	0.00223254	0.101453	0.0435144
chr17	30815958	30816058	6752152	0	-	0.45	(0.44,0.476]	chr17	663628	61	INTRON	INTRON	CRLF3	ENSG00000176390.12	ENST00000324238.7:ENST00000578692.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	34	2	4.43377	4.64597	4.85817	0.0162803	0.00223254	0.101453	0.0435144
chr17	78405288	78405388	6682569	0	+	0.46	(0.44,0.476]	chr17	652826	8	INTRON	INTRON	PGS1	ENSG00000087157.19	ENST00000262764.11:ENST00000589425.5:ENST00000589426.5:ENST00000588169.5:ENST00000585521.2:ENST00000588281.5:ENST00000591996.1:ENST00000586019.1:ENST00000586355.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	34	2	4.43377	4.64597	4.85817	0.0162803	0.00223254	0.101453	0.0435144
chr2	197869999	197870099	969756	0	+	0.45	(0.44,0.476]	chr2	104858	593	INTRON	INTRON	PLCL1	ENSG00000115896.16	ENST00000428675.6:ENST00000435320.1:ENST00000487695.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	34	2	4.43377	4.64597	4.85817	0.0162803	0.00223254	0.101453	0.0435144
chr15	64368269	64368369	6204956	0	-	0.35	(0.32,0.35]	chr15	591787	18	INTRON	INTRON	ENSG00000259316:PCLAF	ENSG00000259316.12:ENSG00000166803.14	ENST00000634251.1:ENST00000634847.3:ENST00000634318.1:ENST00000635160.1:ENST00000635704.1:ENST00000634529.1:ENST00000635511.1:ENST00000635605.1:ENST00000635593.1:ENST00000634259.2:ENST00000560278.2:ENST00000635413.1:ENST00000634538.1:ENST00000635320.1:ENST00000558783.2:ENST00000300035.9:ENST00000380258.6:ENST00000559519.5:ENST00000558008.3:ENST00000558043.5:ENST00000560234.1:ENST00000559280.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	83	2	3.31533	4.64591	5.97649	0.00323121	3.1737e-5	0.0507087	0.00449886
chr1	10418246	10418325	22674	0	+	0.265823	[0,0.28]	chr1	2426	4	INTRON	INTRON	PGD	ENSG00000142657.21	ENST00000270776.13:ENST00000498356.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	39	2	4.28915	4.64589	5.00263	0.0319595	0.013055	0.14477	0.093385
chr6	147683430	147683529	2990830	0	+	0.232323	[0,0.28]	chr6	280163	69	INTRON	INTRON	ENSG00000227681	ENSG00000227681.5	ENST00000427015.1:ENST00000432506.5:ENST00000442094.5	lncRNA	lncRNA	lncRNA	lncRNA	0	39	2	4.28915	4.64589	5.00263	0.0319595	0.013055	0.14477	0.093385
chr14	69713755	69713854	5776739	0	+	0.323232	(0.32,0.35]	chr14	547332	29	UTR3	UTR3:EXON_MRNA	SUSD6	ENSG00000100647.8	ENST00000342745.5	protein_coding	protein_coding	protein_coding	protein_coding	1	84	2	3.63897	4.645595	5.65222	9.34231e-4	1.55757e-4	0.0280484	0.0106835
chr10	5925172	5925263	4385554	0	+	0.450549	(0.44,0.476]	chr10	404723	4	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	FBH1	ENSG00000134452.20	ENST00000397269.7:ENST00000362091.9:ENST00000379999.6:ENST00000461504.5:ENST00000485290.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	34	2	4.53034	4.64551	4.76068	0.00672609	0.00653414	0.0738715	0.0699952
chr15	67179251	67179350	6052997	0	+	0.454545	(0.44,0.476]	chr15	576318	43	INTRON	INTRON	SMAD3	ENSG00000166949.17	ENST00000327367.9:ENST00000679624.1:ENST00000540846.6:ENST00000558894.5:ENST00000439724.7:ENST00000681239.1:ENST00000537194.6:ENST00000558827.1:ENST00000558428.5:ENST00000560402.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	34	2	4.53034	4.64551	4.76068	0.00672609	0.00653414	0.0738715	0.0699952
chr2	181010729	181010829	936273	0	+	0.31	(0.28,0.32]	chr2	102627	208	INTRON	INTRON	UBE2E3	ENSG00000170035.16	ENST00000602303.5:ENST00000602959.5:ENST00000602479.5:ENST00000392415.6:ENST00000602291.5:ENST00000410062.9:ENST00000602499.5:ENST00000602710.5:ENST00000602762.5:ENST00000602888.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	82	2	3.89776	4.645055	5.39235	0.0024844	2.03846e-4	0.0446195	0.0124395
chr7	139078051	139078151	3656099	0	-	0.51	(0.476,0.515]	chr7	339428	1	SS5_PROX	SS5_PROX:INTRON	ZC3HAV1	ENSG00000105939.14	ENST00000242351.10:ENST00000464606.5:ENST00000680309.1:ENST00000471652.1:ENST00000460845.5	protein_coding	protein_coding	protein_coding	protein_coding	1	70	2	3.62464	4.644845	5.66505	5.079e-4	2.08835e-4	0.0202328	0.0131276
chr5	28815646	28815746	2329906	0	+	0.22	[0,0.28]	chr5	225135	51	INTRON	INTRON	LINC02109	ENSG00000259786.7	ENST00000658190.1	lncRNA	lncRNA	lncRNA	lncRNA	0	41	2	4.07901	4.644775	5.21054	0.0494049	0.00758653	0.174117	0.0749063
chr21	28979920	28980019	7436563	0	-	0.434343	(0.408,0.44]	chr21	758418	81	INTRON	INTRON	LTN1	ENSG00000198862.14	ENST00000614971.4:ENST00000389194.7:ENST00000361371.10:ENST00000389195.7:ENST00000483326.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	77	2	3.78937	4.644355	5.49934	3.51772e-4	1.5076e-4	0.0174637	0.0106137
chr9	72128899	72128999	4141057	0	+	0.34	(0.32,0.35]	chr9	377405	137	INTRON	INTRON	GDA	ENSG00000119125.17	ENST00000545168.5	protein_coding	protein_coding	protein_coding	protein_coding	1	87	2	3.85404	4.64432	5.4346	4.09682e-4	3.75908e-4	0.0181306	0.0179813
chr16	14870921	14871020	6304392	0	+	0.363636	(0.35,0.378]	chr16	602994	19	INTRON	INTRON	NOMO1	ENSG00000103512.16	ENST00000287667.12	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.39303	4.6441300000000005	4.89523	0.0237246	0.00253947	0.118716	0.0465056
chr4	169682807	169682905	2080505	0	+	0.377551	(0.35,0.378]	chr4	205626	22	INTRON	INTRON	CLCN3	ENSG00000109572.15	ENST00000511092.5:ENST00000347613.8:ENST00000360642.7:ENST00000512813.5:ENST00000513761.6:ENST00000613795.4:ENST00000507875.5	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.39303	4.6441300000000005	4.89523	0.0237246	0.00253947	0.118716	0.0465056
chr2	131077704	131077803	1228934	0	-	0.373737	(0.35,0.378]	chr2	130987	54	INTRON	INTRON	FAM168B	ENSG00000152102.18	ENST00000389915.4:ENST00000409185.5	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.1971	4.64381	5.09052	0.0367539	0.00123501	0.138959	0.0326215
chr9	33047193	33047292	4243075	0	-	0.282828	(0.28,0.32]	chr9	390017	56	UTR3	UTR3:EXON_MRNA	SMU1	ENSG00000122692.9	ENST00000397149.4	protein_coding	protein_coding	protein_coding	protein_coding	1	80	2	3.616	4.643785	5.67157	9.48957e-4	7.42427e-4	0.0281755	0.024913
chr9	97993732	97993832	4173143	0	+	0.5	(0.476,0.515]	chr9	380269	87	INTRON	INTRON	ANP32B	ENSG00000136938.9	ENST00000339399.5:ENST00000473205.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	112	2	3.10069	4.6437349999999995	6.18678	1.12565e-4	1.63637e-5	0.0090528	0.00324999
chr2	235634611	235634711	1042743	0	+	0.46	(0.44,0.476]	chr2	111222	1097	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1:ENST00000402604.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	71	2	3.41176	4.643695	5.87563	0.00130987	8.84961e-5	0.0333932	0.00842626
chr1	223965648	223965747	643529	0	-	0.373737	(0.35,0.378]	chr1	75994	30	INTRON	INTRON	GTF2IP20	ENSG00000272645.4	ENST00000634905.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	35	2	4.49626	4.643525	4.79079	0.00917582	0.00846427	0.0855292	0.0776969
chr6	42662967	42663062	2866088	0	+	0.410526	(0.408,0.44]	chr6	271190	3	SS3_PROX	SS3_PROX:INTRON	UBR2	ENSG00000024048.11	ENST00000372899.6:ENST00000372901.2	protein_coding	protein_coding	protein_coding	protein_coding	2	95	2	3.5591	4.643045	5.72699	1.93446e-4	4.27819e-5	0.0127226	0.00529798
chr15	83488796	83488893	6082396	0	+	0.350515	(0.35,0.378]	chr15	579038	1	SS3_PROX	SS3_PROX:INTRON	SH3GL3	ENSG00000140600.17	ENST00000492099.1:ENST00000427482.7:ENST00000563901.5:ENST00000324537.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	38	2	3.97032	4.642939999999999	5.31556	0.0578667	4.97087e-4	0.167723	0.0201536
chr19	34191487	34191586	7050993	0	+	0.373737	(0.35,0.378]	chr19	703187	184	INTRON	INTRON	LSM14A	ENSG00000257103.9	ENST00000544216.8:ENST00000589878.5:ENST00000540746.6:ENST00000433627.9:ENST00000586157.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	38	2	3.97032	4.642939999999999	5.31556	0.0578667	4.97087e-4	0.167723	0.0201536
chr5	128055499	128055598	2716024	0	-	0.424242	(0.408,0.44]	chr5	255357	2	EXON_LNCRNA	EXON_LNCRNA:INTRON	SLC12A2-DT	ENSG00000245937.9	ENST00000499346.7:ENST00000514409.6:ENST00000661296.1:ENST00000657475.2:ENST00000689029.1:ENST00000687795.1:ENST00000661552.2:ENST00000660408.1:ENST00000501652.5:ENST00000501173.6:ENST00000514573.5:ENST00000508353.5:ENST00000660180.1:ENST00000665302.1:ENST00000659990.1:ENST00000665599.1:ENST00000501702.7:ENST00000668567.1:ENST00000657683.1:ENST00000668265.1:ENST00000659415.1:ENST00000508878.5:ENST00000656154.1	lncRNA	lncRNA	lncRNA	lncRNA	0	34	2	4.42713	4.642925	4.85872	0.0173083	0.00221911	0.104099	0.0435144
chrX	111701940	111702040	7702226	0	+	0.31	(0.28,0.32]	chrX	788221	119	INTRON	INTRON	ALG13	ENSG00000101901.12	ENST00000487141.5:ENST00000394780.8:ENST00000251943.8:ENST00000610588.4:ENST00000621367.4:ENST00000622997.3:ENST00000624161.3:ENST00000636363.1:ENST00000624881.3:ENST00000495283.5:ENST00000486353.5:ENST00000623144.3:ENST00000470971.5:ENST00000623148.3:ENST00000471924.5:ENST00000436609.5:ENST00000470704.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	38	2	4.14214	4.642775	5.14341	0.0579756	0.00185891	0.167723	0.039946
chr5	139564405	139564504	2500534	0	+	0.545455	(0.515,0.57]	chr5	239026	16	INTRON	INTRON	UBE2D2	ENSG00000131508.16	ENST00000511725.5:ENST00000505007.5:ENST00000398733.8:ENST00000510470.1:ENST00000398734.8:ENST00000505548.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	116	2	2.97398	4.6427499999999995	6.31152	5.90767e-5	2.37911e-6	0.00631069	0.00107133
chr1	212315802	212315902	308381	0	+	0.41	(0.408,0.44]	chr1	35572	16	INTRON	INTRON	PPP2R5A	ENSG00000066027.12	ENST00000261461.7:ENST00000537030.3:ENST00000498129.6:ENST00000479259.1:ENST00000498123.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	70	2	3.59564	4.64245	5.68926	5.73354e-4	2.2853e-4	0.0217398	0.0138641
chr1	229505839	229505939	653308	0	-	0.44	(0.408,0.44]	chr1	77406	4	SS5_PROX	SS5_PROX:INTRON	NUP133	ENSG00000069248.12	ENST00000261396.6:ENST00000366678.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	34	2	4.53088	4.64243	4.75398	0.00703931	0.00669275	0.0738715	0.0718189
chr11	32927369	32927461	4765060	0	+	0.423913	(0.408,0.44]	chr11	440618	1	SS5_PROX	SS5_PROX:INTRON	QSER1	ENSG00000060749.16	ENST00000650167.2:ENST00000399302.7:ENST00000527250.5:ENST00000527788.5:ENST00000528155.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	34	2	4.53088	4.64243	4.75398	0.00703931	0.00669275	0.0738715	0.0718189
chr17	31236602	31236702	6592595	0	+	0.41	(0.408,0.44]	chr17	641212	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	NF1	ENSG00000196712.20	ENST00000696138.1:ENST00000356175.7:ENST00000691014.1:ENST00000358273.9:ENST00000579081.5:ENST00000495910.6:ENST00000456735.6:ENST00000493220.5:ENST00000696139.1:ENST00000466819.5:ENST00000479614.1:ENST00000687863.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	34	2	4.53088	4.64243	4.75398	0.00703931	0.00669275	0.0738715	0.0718189
chr17	82910483	82910580	6695830	0	+	0.412371	(0.408,0.44]	chr17	655020	8	INTRON	INTRON	TBCD	ENSG00000141556.22	ENST00000682479.1:ENST00000682722.1:ENST00000684464.1:ENST00000684544.1:ENST00000681983.1:ENST00000684361.1:ENST00000683184.1:ENST00000683282.1:ENST00000684408.1:ENST00000355528.9:ENST00000683444.1:ENST00000684776.1:ENST00000683041.1:ENST00000684760.1:ENST00000684349.1:ENST00000682213.1:ENST00000539345.6:ENST00000684000.1:ENST00000684188.1:ENST00000684429.1:ENST00000682610.1:ENST00000683821.1:ENST00000682654.1:ENST00000576160.6:ENST00000571712.5:ENST00000576996.5:ENST00000574801.5:ENST00000683584.1:ENST00000682099.1:ENST00000684559.1:ENST00000571316.5:ENST00000576760.5:ENST00000572984.5:ENST00000683839.1:ENST00000574975.5:ENST00000572953.5:ENST00000571796.5:ENST00000682315.1:ENST00000574422.1:ENST00000576677.6:ENST00000571618.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	34	2	4.53088	4.64243	4.75398	0.00703931	0.00669275	0.0738715	0.0718189
chr19	6266195	6266294	7128289	0	-	0.434343	(0.408,0.44]	chr19	717613	35	INTRON	INTRON	MLLT1	ENSG00000130382.9	ENST00000252674.9	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.53088	4.64243	4.75398	0.00703931	0.00669275	0.0738715	0.0718189
chr20	32505686	32505786	7326114	0	-	0.43	(0.408,0.44]	chr20	746100	185	INTRON	INTRON	NOL4L	ENSG00000197183.15	ENST00000621426.7:ENST00000375678.7:ENST00000375677.5:ENST00000201961.6	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.53088	4.64243	4.75398	0.00703931	0.00669275	0.0738715	0.0718189
chr3	141993137	141993237	1833871	0	-	0.42	(0.408,0.44]	chr3	184314	2	SS5_PROX	SS5_PROX:INTRON	TFDP2	ENSG00000114126.18	ENST00000489671.6:ENST00000499676.5:ENST00000486111.5:ENST00000477292.5:ENST00000495310.5:ENST00000467072.5:ENST00000487734.5:ENST00000479040.5:ENST00000467667.5:ENST00000478006.5:ENST00000497579.5:ENST00000492919.1:ENST00000464782.5:ENST00000488107.6:ENST00000494656.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	34	2	4.53088	4.64243	4.75398	0.00703931	0.00669275	0.0738715	0.0718189
chr3	177210500	177210599	1872584	0	-	0.434343	(0.408,0.44]	chr3	187458	88	INTRON	INTRON	TBL1XR1	ENSG00000177565.18	ENST00000635794.1	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.53088	4.64243	4.75398	0.00703931	0.00669275	0.0738715	0.0718189
chr1	36227958	36228057	72966	0	+	0.545455	(0.515,0.57]	chr1	9371	21	INTRON	INTRON	THRAP3	ENSG00000054118.15	ENST00000469141.6:ENST00000648638.1:ENST00000354618.10	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.59914	4.64241	4.68568	0.00616166	0.00270027	0.0676501	0.0479115
chr20	31558811	31558911	7253434	0	+	0.52	(0.515,0.57]	chr20	736659	36	INTRON	INTRON	HM13	ENSG00000101294.18	ENST00000335574.10:ENST00000674240.1:ENST00000340852.9:ENST00000398174.9:ENST00000649820.1:ENST00000466766.2:ENST00000650367.1:ENST00000344042.5:ENST00000649374.1:ENST00000469126.5:ENST00000492709.5:ENST00000469097.5:ENST00000487964.5:ENST00000649583.1:ENST00000460389.5:ENST00000494153.5:ENST00000483310.5:ENST00000472128.5:ENST00000474466.5:ENST00000468559.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	32	2	4.59914	4.64241	4.68568	0.00616166	0.00270027	0.0676501	0.0479115
chr8	55809589	55809688	3754162	0	+	0.545455	(0.515,0.57]	chr8	349228	42	INTRON	INTRON	TGS1	ENSG00000137574.11	ENST00000260129.6:ENST00000523948.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	32	2	4.59914	4.64241	4.68568	0.00616166	0.00270027	0.0676501	0.0479115
chr10	75227557	75227657	4464512	0	+	0.37	(0.35,0.378]	chr10	411844	48	INTRON	INTRON	VDAC2	ENSG00000165637.14	ENST00000543351.5:ENST00000298468.9:ENST00000332211.11:ENST00000313132.8	protein_coding	protein_coding	protein_coding	protein_coding	1	80	2	3.64252	4.64159	5.64066	8.02255e-4	1.14247e-4	0.0262199	0.0091431
chr13	46583702	46583802	5481786	0	+	0.31	(0.28,0.32]	chr13	525230	296	INTRON	INTRON	LRCH1	ENSG00000136141.15	ENST00000311191.10:ENST00000389797.8:ENST00000443945.6:ENST00000389798.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	38	2	4.23719	4.64149	5.04579	0.0264147	0.00714672	0.133676	0.0723634
chr1	52080755	52080854	101503	0	+	0.525253	(0.515,0.57]	chr1	13441	91	INTRON	INTRON	BTF3L4	ENSG00000134717.18	ENST00000477828.6:ENST00000489308.6:ENST00000526132.5:ENST00000313334.13:ENST00000472944.6:ENST00000484036.1:ENST00000533836.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	64	2	3.62821	4.641475	5.65474	4.12866e-4	9.00945e-5	0.0181365	0.00844245
chr17	28933063	28933162	6746045	0	-	0.424242	(0.408,0.44]	chr17	662925	49	INTRON	INTRON	PHF12	ENSG00000109118.14	ENST00000332830.9:ENST00000577226.5:ENST00000582436.5:ENST00000378879.7:ENST00000268756.7:ENST00000583524.5:ENST00000483934.5:ENST00000584685.1:ENST00000582853.5:ENST00000584236.1:ENST00000583747.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	71	2	3.93732	4.6414	5.34548	9.40657e-4	1.0367e-4	0.0280776	0.00863144
chr11	48038303	48038403	4789796	0	+	0.51	(0.476,0.515]	chr11	443265	569	INTRON	INTRON	PTPRJ	ENSG00000149177.14	ENST00000418331.7:ENST00000440289.6:ENST00000527952.1:ENST00000534219.5	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	3.97201	4.6412949999999995	5.31058	0.030904	9.15544e-4	0.143385	0.0278396
chr7	158740741	158740835	3688910	0	-	0.5	(0.476,0.515]	chr7	342324	13	INTRON	INTRON	ESYT2	ENSG00000117868.18	ENST00000251527.10:ENST00000275418.13:ENST00000652148.1:ENST00000435514.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	76	2	3.15202	4.64122	6.13042	0.00455841	5.46446e-6	0.0595107	0.00162138
chr5	145658105	145658205	2744862	0	-	0.36	(0.35,0.378]	chr5	258670	1844	INTRON	INTRON	PRELID2	ENSG00000186314.12	ENST00000510259.5	protein_coding	processed_transcript	protein_coding	processed_transcript	0	38	2	4.07186	4.64102	5.21018	0.0279478	0.00228003	0.137011	0.0426265
chr17	44425091	44425191	6780044	0	-	0.31	(0.28,0.32]	chr17	668649	2	INTRON	INTRON	GPATCH8	ENSG00000186566.13	ENST00000591680.6:ENST00000335500.8:ENST00000635257.1:ENST00000587228.5:ENST00000585614.1:ENST00000590041.5:ENST00000586265.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	39	2	4.12807	4.6408249999999995	5.15358	0.0338135	0.0052282	0.146709	0.0633615
chr7	101949501	101949601	3367688	0	+	0.4	(0.378,0.408]	chr7	315229	165	INTRON	INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000497815.5:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000558469.5:ENST00000560541.5:ENST00000558836.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	72	2	3.90371	4.64055	5.37739	0.0010014	1.30398e-4	0.0288906	0.00983066
chr10	69365792	69365889	4446352	0	+	0.515464	(0.515,0.57]	chr10	410249	5	INTRON	INTRON	HK1	ENSG00000156515.24	ENST00000436817.6:ENST00000360289.6:ENST00000448642.6:ENST00000643399.2:ENST00000298649.8:ENST00000359426.7:ENST00000493591.6:ENST00000494253.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	32	2	4.51	4.63992	4.76984	0.00809449	0.00198034	0.0766625	0.0411469
chr11	591767	591867	4719728	0	+	0.53	(0.515,0.57]	chr11	436181	3	SS5_PROX	SS5_PROX:INTRON	PHRF1	ENSG00000070047.13	ENST00000264555.10:ENST00000416188.3:ENST00000534320.5:ENST00000413872.6:ENST00000533464.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	32	2	4.51	4.63992	4.76984	0.00809449	0.00198034	0.0766625	0.0411469
chr3	152389172	152389272	1536193	0	+	0.52	(0.515,0.57]	chr3	160003	536	INTRON	INTRON	MBNL1	ENSG00000152601.18	ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000495875.6:ENST00000324210.10:ENST00000493459.5:ENST00000459747.1:ENST00000460591.5:ENST00000545754.5:ENST00000357472.7:ENST00000324196.9:ENST00000498502.5:ENST00000463374.5:ENST00000485910.5:ENST00000465907.6:ENST00000492948.5:ENST00000485509.5:ENST00000464596.5	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.51	4.63992	4.76984	0.00809449	0.00198034	0.0766625	0.0411469
chr6	140193373	140193473	2968389	0	+	0.35	(0.32,0.35]	chr6	279015	443	INTRON	INTRON	ENSG00000288714	ENSG00000288714.1	ENST00000683950.1	lncRNA	lncRNA	lncRNA	lncRNA	1	76	2	3.57731	4.639855	5.7024	7.67492e-4	5.25722e-4	0.0254532	0.0210958
chr11	67152903	67153003	4812784	0	+	0.4	(0.378,0.408]	chr11	448116	38	INTRON	INTRON	KDM2A	ENSG00000173120.15	ENST00000529006.7:ENST00000398645.6:ENST00000527157.1:ENST00000308783.9	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	36	2	4.10661	4.63971	5.17281	0.0399023	7.27294e-4	0.143072	0.0245647
chr7	107542621	107542721	3612813	0	-	0.39	(0.378,0.408]	chr7	336704	149	INTRON	INTRON	COG5	ENSG00000164597.15	ENST00000297135.9:ENST00000347053.8:ENST00000393603.7:ENST00000475638.6:ENST00000605888.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	36	2	4.10661	4.63971	5.17281	0.0399023	7.27294e-4	0.143072	0.0245647
chr1	45614777	45614866	93526	0	+	0.52809	(0.515,0.57]	chr1	12629	4	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NASP	ENSG00000132780.17	ENST00000437901.6:ENST00000537798.5:ENST00000437362.6:ENST00000350030.8:ENST00000527359.5:ENST00000453748.5:ENST00000528238.5:ENST00000372052.8:ENST00000351223.7:ENST00000530073.5:ENST00000481782.1:ENST00000531612.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	32	2	4.5963	4.6396999999999995	4.6831	0.00471288	0.00370287	0.0600108	0.0561162
chr14	31002959	31003059	5857639	0	-	0.55	(0.515,0.57]	chr14	556508	386	INTRON	INTRON	STRN3	ENSG00000196792.12	ENST00000355683.9:ENST00000357479.10:ENST00000555358.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	32	2	4.5963	4.6396999999999995	4.6831	0.00471288	0.00370287	0.0600108	0.0561162
chr14	31175538	31175638	5858688	0	-	0.54	(0.515,0.57]	chr14	556709	4	SS3_PROX	SS3_PROX:INTRON	HECTD1	ENSG00000092148.14	ENST00000399332.6:ENST00000553700.5:ENST00000693685.1:ENST00000692835.1:ENST00000554882.6:ENST00000611816.5:ENST00000688933.1:ENST00000691390.1:ENST00000553957.6:ENST00000687002.1:ENST00000554471.3:ENST00000556224.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	32	2	4.5963	4.6396999999999995	4.6831	0.00471288	0.00370287	0.0600108	0.0561162
chr15	78472582	78472661	6067840	0	+	0.531646	(0.515,0.57]	chr15	577958	3	INTRON	INTRON	IREB2	ENSG00000136381.13	ENST00000258886.13:ENST00000560440.5:ENST00000558570.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	32	2	4.5963	4.6396999999999995	4.6831	0.00471288	0.00370287	0.0600108	0.0561162
chr18	21595367	21595466	6955062	0	-	0.545455	(0.515,0.57]	chr18	688032	15	INTRON	INTRON	ESCO1	ENSG00000141446.11	ENST00000269214.10:ENST00000383276.1:ENST00000580101.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	32	2	4.5963	4.6396999999999995	4.6831	0.00471288	0.00370287	0.0600108	0.0561162
chr19	1846505	1846605	7113812	0	-	0.45	(0.44,0.476]	chr19	714891	153	INTRON	INTRON	REXO1	ENSG00000079313.15	ENST00000170168.9:ENST00000587524.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	38	2	3.97626	4.6395800000000005	5.3029	0.0300538	0.00102616	0.142135	0.029231300000000002
chr10	45987537	45987637	4430536	0	+	0.26	[0,0.28]	chr10	408486	17	INTRON	INTRON	TIMM23	ENSG00000265354.4	ENST00000580018.4	protein_coding	protein_coding	protein_coding	protein_coding	2	116	2	3.0637	4.639475	6.21525	0.00104498	2.75841e-4	0.0297408	0.0152235
chr5	64808005	64808105	2365646	0	+	0.35	(0.32,0.35]	chr5	228120	3	UTR3	UTR3:EXON_MRNA:INTRON	CWC27	ENSG00000153015.17	ENST00000685023.1:ENST00000508024.2:ENST00000693640.1:ENST00000693303.1:ENST00000381070.8:ENST00000691921.1:ENST00000688318.1:ENST00000688896.1:ENST00000688107.1:ENST00000692660.1:ENST00000689574.1:ENST00000693660.1:ENST00000687314.1:ENST00000692763.1:ENST00000693121.1:ENST00000689534.1:ENST00000692005.1:ENST00000686041.1:ENST00000607786.2:ENST00000692572.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	39	2	4.04364	4.639419999999999	5.2352	0.034181	0.0028268	0.146815	0.0472361
chr11	47235894	47235990	4787958	0	+	0.40625	(0.378,0.408]	chr11	442882	6	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	DDB2	ENSG00000134574.12	ENST00000256996.9:ENST00000378601.7:ENST00000612309.4:ENST00000617022.4:ENST00000616278.4:ENST00000378600.7:ENST00000378603.7:ENST00000617847.4:ENST00000614394.1:ENST00000620515.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	95	2	3.39176	4.639	5.88624	1.19481e-4	1.17224e-4	0.00988798	0.00929802
chr21	43103121	43103220	7468299	0	-	0.363636	(0.35,0.378]	chr21	761118	18	EXON_MRNA	EXON_MRNA:INTRON	U2AF1	ENSG00000160201.12	ENST00000291552.9:ENST00000380276.6:ENST00000464750.5:ENST00000475639.5:ENST00000459639.5:ENST00000486519.5:ENST00000463599.5:ENST00000496462.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	73	2	3.62272	4.638445	5.65417	5.64719e-4	4.33402e-4	0.021704	0.0190829
chr6	5253772	5253872	3050010	0	-	0.36	(0.35,0.378]	chr6	283848	127	INTRON	INTRON	LYRM4	ENSG00000214113.11	ENST00000330636.9:ENST00000468929.5:ENST00000464010.5:ENST00000480566.5:ENST00000500576.4:ENST00000455814.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	73	2	3.62272	4.638445	5.65417	5.64719e-4	4.33402e-4	0.021704	0.0190829
chr14	81382168	81382268	5937140	0	-	0.4	(0.378,0.408]	chr14	564218	106	INTRON	INTRON	STON2	ENSG00000140022.14	ENST00000553821.3:ENST00000614646.5:ENST00000555447.5:ENST00000649389.1:ENST00000652748.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	36	2	4.21226	4.63819	5.06412	0.0177403	0.0030522	0.11319	0.0493883
chr15	28288087	28288187	6123722	0	-	0.38	(0.378,0.408]	chr15	583388	74	INTRON	INTRON	HERC2	ENSG00000128731.18	ENST00000261609.13:ENST00000564734.5:ENST00000564383.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	36	2	4.21226	4.63819	5.06412	0.0177403	0.0030522	0.11319	0.0493883
chr19	41317667	41317767	7185133	0	-	0.38	(0.378,0.408]	chr19	726872	146	INTRON	INTRON	TGFB1	ENSG00000105329.11	ENST00000598758.5	protein_coding	processed_transcript	protein_coding	processed_transcript	0	36	2	4.21226	4.63819	5.06412	0.0177403	0.0030522	0.11319	0.0493883
chr10	73096465	73096565	4647843	0	-	0.66	(0.57,1]	chr10	427558	3	SS5_PROX	SS5_PROX:INTRON	P4HA1	ENSG00000122884.13	ENST00000394890.7:ENST00000307116.6:ENST00000373008.6:ENST00000440381.5:ENST00000263556.3	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.60161	4.63802	4.67443	0.00142229	8.07515e-4	0.0340865	0.0258804
chr12	119677849	119677948	5234938	0	+	0.585859	(0.57,1]	chr12	496714	6	EXON_MRNA	EXON_MRNA:INTRON	PRKAB1	ENSG00000111725.11	ENST00000541640.5:ENST00000229328.10:ENST00000540121.5:ENST00000545223.1:ENST00000545870.1:ENST00000542698.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	26	2	4.60161	4.63802	4.67443	0.00142229	8.07515e-4	0.0340865	0.0258804
chr21	43907108	43907208	7414211	0	+	0.6	(0.57,1]	chr21	755698	27	INTRON	INTRON	AGPAT3	ENSG00000160216.21	ENST00000291572.13:ENST00000448287.5:ENST00000398061.5:ENST00000327505.6	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.60161	4.63802	4.67443	0.00142229	8.07515e-4	0.0340865	0.0258804
chr1	35909197	35909296	70915	0	+	0.393939	(0.378,0.408]	chr1	9087	17	INTRON	INTRON	AGO1	ENSG00000092847.13	ENST00000373206.5:ENST00000373204.6:ENST00000674426.1:ENST00000674304.1:ENST00000635259.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	34	2	4.58427	4.637980000000001	4.69169	0.0128325	0.00432302	0.0926667	0.0599409
chr1	52072025	52072124	101415	0	+	0.40404	(0.378,0.408]	chr1	13441	3	INTRON	INTRON	BTF3L4	ENSG00000134717.18	ENST00000477828.6:ENST00000489308.6:ENST00000526132.5:ENST00000313334.13:ENST00000472944.6:ENST00000484036.1:ENST00000533836.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	34	2	4.58427	4.637980000000001	4.69169	0.0128325	0.00432302	0.0926667	0.0599409
chr7	20157703	20157803	3496945	0	-	0.4	(0.378,0.408]	chr7	326563	1	SS5_PROX	SS5_PROX:INTRON	MACC1	ENSG00000183742.13	ENST00000400331.10:ENST00000332878.8:ENST00000589011.1	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.58427	4.637980000000001	4.69169	0.0128325	0.00432302	0.0926667	0.0599409
chrX	53652572	53652671	7821566	0	-	0.313131	(0.28,0.32]	chrX	798227	39	INTRON	INTRON	HUWE1	ENSG00000086758.16	ENST00000262854.11:ENST00000342160.7:ENST00000612484.4:ENST00000218328.12:ENST00000446750.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	81	2	3.83973	4.637715	5.4357	0.00215368	2.68965e-4	0.0417866	0.0145349
chr15	84695209	84695308	6251818	0	-	0.535354	(0.515,0.57]	chr15	596683	27	INTRON	INTRON	SEC11A	ENSG00000140612.14	ENST00000559729.5:ENST00000268220.12:ENST00000560266.5:ENST00000558134.5:ENST00000558217.5:ENST00000455959.7:ENST00000560409.5:ENST00000558196.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	34	2	4.17037	4.637425	5.10448	0.0139194	0.0010345	0.10247	0.029231300000000002
chr7	111364875	111364975	3622131	0	-	0.5	(0.476,0.515]	chr7	337093	4010	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	154	2	2.50945	4.63729	6.76513	2.84218e-4	5.85597e-7	0.0150568	4.48872e-4
chr11	63946132	63946230	4801693	0	+	0.408163	(0.378,0.408]	chr11	445150	3	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NAA40	ENSG00000110583.13	ENST00000338447.10:ENST00000536939.1:ENST00000534965.5:ENST00000377793.9:ENST00000544138.5:ENST00000539656.5:ENST00000542163.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	216	2	4.34862	4.637195	4.92577	8.16224e-7	2.29473e-7	5.54219e-4	2.29753e-4
chr1	226287463	226287563	647636	0	-	0.32	(0.28,0.32]	chr1	76728	4	SS5_PROX	SS5_PROX:INTRON	LIN9	ENSG00000183814.16	ENST00000460719.5:ENST00000366808.6:ENST00000328205.9:ENST00000681046.1:ENST00000481685.1	protein_coding	protein_coding	protein_coding	protein_coding	1	80	2	3.43186	4.63712	5.84238	0.00160646	5.0114e-4	0.0367961	0.0206993
chr12	102076596	102076696	5399538	0	-	0.32	(0.28,0.32]	chr12	515083	4	SS5_PROX	SS5_PROX:INTRON	NUP37	ENSG00000075188.9	ENST00000552283.6:ENST00000546385.5:ENST00000251074.5:ENST00000547269.1:ENST00000551744.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	36	2	4.58875	4.63701	4.68527	0.0230574	0.00819419	0.118056	0.0810802
chr13	19981566	19981666	5452658	0	+	0.31	(0.28,0.32]	chr13	522446	111	INTRON	INTRON	ZMYM2	ENSG00000121741.17	ENST00000382881.7:ENST00000382874.6:ENST00000610343.5:ENST00000382871.3:ENST00000620447.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	36	2	4.58875	4.63701	4.68527	0.0230574	0.00819419	0.118056	0.0810802
chr13	49019688	49019788	5487432	0	+	0.31	(0.28,0.32]	chr13	525612	130	INTRON	INTRON	FNDC3A	ENSG00000102531.16	ENST00000492622.6:ENST00000378383.5:ENST00000541916.5:ENST00000484074.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	36	2	4.58875	4.63701	4.68527	0.0230574	0.00819419	0.118056	0.0810802
chr5	54240207	54240307	2620214	0	-	0.29	(0.28,0.32]	chr5	248860	679	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2:ENST00000505630.5:ENST00000505383.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	36	2	4.58875	4.63701	4.68527	0.0230574	0.00819419	0.118056	0.0810802
chr8	55978977	55979077	3755340	0	+	0.3	(0.28,0.32]	chr8	349311	88	INTRON	INTRON	LYN	ENSG00000254087.8	ENST00000519728.6:ENST00000520220.6:ENST00000420292.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	36	2	4.58875	4.63701	4.68527	0.0230574	0.00819419	0.118056	0.0810802
chr12	108663155	108663254	5406088	0	-	0.424242	(0.408,0.44]	chr12	516004	6	INTRON	INTRON	CORO1C	ENSG00000110880.11	ENST00000261401.8:ENST00000420959.6:ENST00000541050.5:ENST00000549384.5:ENST00000421578.6:ENST00000550542.5:ENST00000549772.5:ENST00000552871.5:ENST00000547294.5:ENST00000550032.5:ENST00000551550.5:ENST00000546571.5:ENST00000551044.1:ENST00000547170.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	76	2	3.20034	4.636985	6.07363	0.00398025	7.09547e-6	0.0549214	0.00188852
chr17	5508262	5508362	6715070	0	-	0.38	(0.378,0.408]	chr17	658393	19	INTRON	INTRON	NLRP1	ENSG00000091592.16	ENST00000544378.6:ENST00000262467.10:ENST00000613500.4:ENST00000574512.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	71	2	3.76175	4.6367449999999995	5.51174	5.93655e-4	2.68579e-4	0.0225024	0.0145349
chr4	121815943	121816043	2032496	0	+	0.44	(0.408,0.44]	chr4	201767	20	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	EXOSC9	ENSG00000123737.13	ENST00000379663.7:ENST00000243498.10:ENST00000513654.5:ENST00000512454.5:ENST00000503236.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	76	2	3.72761	4.63661	5.54561	4.662e-4	1.20601e-4	0.0199613	0.00938389
chr2	58219115	58219214	1126528	0	-	0.141414	[0,0.28]	chr2	120943	13	INTRON	INTRON	FANCL	ENSG00000115392.13	ENST00000696400.1:ENST00000403295.8:ENST00000696492.1:ENST00000427708.7:ENST00000696314.1:ENST00000696315.1:ENST00000696454.1:ENST00000696508.1:ENST00000696548.1:ENST00000696542.1:ENST00000696319.1:ENST00000403676.6:ENST00000696433.1:ENST00000696434.1:ENST00000696499.1:ENST00000696564.1:ENST00000402135.8:ENST00000696546.1:ENST00000233741.9:ENST00000696316.1:ENST00000696378.1:ENST00000696435.1:ENST00000696493.1:ENST00000696543.1:ENST00000696544.1:ENST00000696545.1:ENST00000696565.1:ENST00000696620.1:ENST00000696621.1:ENST00000696635.1:ENST00000696364.1:ENST00000696634.1:ENST00000696317.1:ENST00000696622.1:ENST00000696467.1:ENST00000696547.1:ENST00000449070.6:ENST00000696305.1:ENST00000417361.2:ENST00000696338.1:ENST00000696361.1:ENST00000696318.1:ENST00000696371.1:ENST00000696409.1:ENST00000696410.1:ENST00000696455.1:ENST00000696468.1:ENST00000696527.1:ENST00000696567.1:ENST00000696324.1:ENST00000696566.1:ENST00000696623.1:ENST00000446381.6:ENST00000696469.1:ENST00000696624.1:ENST00000696411.1:ENST00000470506.2:ENST00000696358.1:ENST00000696373.1:ENST00000696394.1:ENST00000696320.1:ENST00000696395.1:ENST00000696341.1:ENST00000696340.1:ENST00000696374.1:ENST00000696396.1:ENST00000696342.1:ENST00000696325.1:ENST00000696399.1:ENST00000696398.1:ENST00000696306.1:ENST00000696397.1:ENST00000696360.1:ENST00000696344.1:ENST00000696343.1:ENST00000696362.1:ENST00000696528.1:ENST00000696326.1:ENST00000696625.1:ENST00000696510.1:ENST00000696438.1:ENST00000696496.1:ENST00000696509.1:ENST00000696569.1:ENST00000696457.1:ENST00000696458.1:ENST00000696473.1:ENST00000696495.1:ENST00000696415.1:ENST00000696472.1:ENST00000696459.1:ENST00000696416.1:ENST00000696530.1:ENST00000696460.1:ENST00000696570.1:ENST00000696531.1:ENST00000696307.1:ENST00000696345.1:ENST00000696377.1:ENST00000696417.1:ENST00000696594.1:ENST00000696595.1:ENST00000696379.1:ENST00000696346.1:ENST00000696380.1:ENST00000696347.1:ENST00000696461.1:ENST00000696596.1:ENST00000696549.1:ENST00000696597.1:ENST00000696550.1:ENST00000696598.1:ENST00000696321.1:ENST00000696476.1:ENST00000696477.1:ENST00000696511.1:ENST00000481670.3:ENST00000696403.1:ENST00000696551.1:ENST00000696308.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	86	2	3.60928	4.636505	5.66373	0.00196371	9.66382e-4	0.0401678	0.0285961
chr11	27073261	27073361	4934526	0	-	0.39	(0.378,0.408]	chr11	462244	62	INTRON	INTRON	BBOX1-AS1	ENSG00000254560.6	ENST00000526061.5:ENST00000525302.5:ENST00000530430.1	lncRNA	lncRNA	lncRNA	lncRNA	1	80	2	3.00568	4.6361349999999995	6.26659	0.00811866	2.70944e-6	0.0766625	0.00105261
chr16	23867416	23867516	6324073	0	+	0.35	(0.32,0.35]	chr16	605693	297	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000498058.1:ENST00000645517.1:ENST00000498739.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	36	2	4.273	4.63611	4.99922	0.0368357	0.00223907	0.138959	0.0435144
chr18	36055808	36055908	6963429	0	-	0.34	(0.32,0.35]	chr18	689080	25	INTRON	INTRON	RPRD1A	ENSG00000141425.18	ENST00000399022.9:ENST00000590898.5:ENST00000357384.8:ENST00000588737.5:ENST00000589050.1:ENST00000592674.1:ENST00000588459.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:nonsense_mediated_decay:processed_transcript	0	36	2	4.273	4.63611	4.99922	0.0368357	0.00223907	0.138959	0.0435144
chr6	31694802	31694899	3079222	0	-	0.329897	(0.32,0.35]	chr6	286966	10	INTRON	INTRON	ABHD16A	ENSG00000204427.12	ENST00000395952.8:ENST00000492084.5:ENST00000495769.5:ENST00000440843.2:ENST00000498420.5:ENST00000477462.5:ENST00000482224.5:ENST00000468037.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	36	2	4.273	4.63611	4.99922	0.0368357	0.00223907	0.138959	0.0435144
chr6	157915182	157915281	3016695	0	+	0.333333	(0.32,0.35]	chr6	281411	48	INTRON	INTRON	SNX9	ENSG00000130340.17	ENST00000680863.1:ENST00000679814.1:ENST00000680464.1:ENST00000681186.1:ENST00000679732.1:ENST00000681183.1:ENST00000681534.1:ENST00000681651.1:ENST00000680089.1:ENST00000680078.1:ENST00000680974.1:ENST00000680095.1:ENST00000681138.1:ENST00000392185.8:ENST00000679790.1:ENST00000680495.1:ENST00000679691.1:ENST00000681881.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	36	2	4.273	4.63611	4.99922	0.0368357	0.00223907	0.138959	0.0435144
chr2	27593680	27593780	718040	0	+	0.33	(0.32,0.35]	chr2	83352	96	INTRON	INTRON	ZNF512	ENSG00000243943.10	ENST00000413371.6:ENST00000416005.6:ENST00000556601.5:ENST00000379717.5:ENST00000355467.6:ENST00000494548.1:ENST00000461705.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	76	2	3.72276	4.6361	5.54944	9.42646e-4	3.96144e-4	0.0280811	0.0178616
chr18	13758642	13758741	6878307	0	+	0.333333	(0.32,0.35]	chr18	681663	41	INTRON	INTRON	RNMT	ENSG00000101654.18	ENST00000543302.6:ENST00000588457.5:ENST00000383314.7:ENST00000592764.5:ENST00000589866.5:ENST00000262173.7:ENST00000593007.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	76	2	3.49869	4.6359449999999995	5.7732	0.00108004	3.96807e-4	0.0300133	0.0185763
chr2	219215438	219215528	1331120	0	-	0.477778	(0.476,0.515]	chr2	139474	5	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ABCB6	ENSG00000115657.14	ENST00000295750.5:ENST00000265316.9:ENST00000497882.5:ENST00000448398.5:ENST00000492953.5:ENST00000417678.5:ENST00000452545.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	34	2	4.34648	4.635885	4.92529	0.0193566	0.00180221	0.108861	0.0392772
chr1	16375292	16375391	35841	0	+	0.40404	(0.378,0.408]	chr1	4353	69	INTRON	INTRON	SZRD1	ENSG00000055070.17	ENST00000475078.1:ENST00000471507.5:ENST00000401089.3:ENST00000486763.5:ENST00000401088.9:ENST00000475554.5:ENST00000476423.5:ENST00000472351.5:ENST00000492354.1:ENST00000472461.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	34	2	4.50056	4.6358049999999995	4.77105	0.015974	0.00330823	0.101453	0.0527031
chr17	61819149	61819249	6808490	0	-	0.4	(0.378,0.408]	chr17	672605	100	INTRON	INTRON	BRIP1	ENSG00000136492.10	ENST00000259008.7:ENST00000682755.1:ENST00000682453.1:ENST00000683039.1:ENST00000682989.1:ENST00000682589.1:ENST00000683235.1:ENST00000682477.1:ENST00000684584.1:ENST00000577598.5:ENST00000682066.1:ENST00000584322.2:ENST00000683381.1:ENST00000579028.2:ENST00000682611.1:ENST00000683692.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	34	2	4.50056	4.6358049999999995	4.77105	0.015974	0.00330823	0.101453	0.0527031
chr3	57642247	57642344	1706479	0	-	0.402062	(0.378,0.408]	chr3	176004	1	INTRON	INTRON	DENND6A	ENSG00000174839.13	ENST00000311128.10:ENST00000477344.1	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.50056	4.6358049999999995	4.77105	0.015974	0.00330823	0.101453	0.0527031
chr4	67658375	67658475	2154025	0	-	0.38	(0.378,0.408]	chr4	212133	88	INTRON	INTRON	UBA6	ENSG00000033178.13	ENST00000322244.10	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.50056	4.6358049999999995	4.77105	0.015974	0.00330823	0.101453	0.0527031
chr1	70233159	70233253	142720	0	+	0.223404	[0,0.28]	chr1	16002	4	INTRON	INTRON	SRSF11	ENSG00000116754.14	ENST00000370951.5:ENST00000687381.1:ENST00000370950.7:ENST00000475204.5:ENST00000370949.2:ENST00000395136.7:ENST00000486667.5:ENST00000481648.5:ENST00000484162.5:ENST00000463859.6:ENST00000690370.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	38	2	4.29536	4.635775	4.97619	0.0590175	0.00535756	0.167915	0.0663076
chr1	150693207	150693307	551865	0	-	0.26	[0,0.28]	chr1	64826	291	INTRON	INTRON	GOLPH3L	ENSG00000143457.11	ENST00000271732.8:ENST00000427665.1	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.29536	4.635775	4.97619	0.0590175	0.00535756	0.167915	0.0663076
chr10	87505952	87506052	4482430	0	+	0.27	[0,0.28]	chr10	412496	4	SS5_PROX	SS5_PROX:INTRON	MINPP1	ENSG00000107789.16	ENST00000371994.8:ENST00000371996.9	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.29536	4.635775	4.97619	0.0590175	0.00535756	0.167915	0.0663076
chr11	86260385	86260485	4842156	0	+	0.4	(0.378,0.408]	chr11	451765	24	INTRON	INTRON	EED	ENSG00000074266.22	ENST00000263360.11:ENST00000528180.5:ENST00000672825.1:ENST00000673233.2:ENST00000327320.8:ENST00000351625.10:ENST00000534595.1:ENST00000525244.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	34	2	4.60771	4.6355450000000005	4.66338	0.0103469	0.00567576	0.0850389	0.0678837
chr20	2882950	2883050	7222658	0	+	0.4	(0.378,0.408]	chr20	733945	88	INTRON	INTRON	PTPRA	ENSG00000132670.21	ENST00000455631.5:ENST00000399903.7:ENST00000216877.10:ENST00000431048.5:ENST00000318266.9:ENST00000430705.5	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.60771	4.6355450000000005	4.66338	0.0103469	0.00567576	0.0850389	0.0678837
chr9	111403307	111403407	4314457	0	-	0.41	(0.408,0.44]	chr9	396714	58	INTRON	INTRON	ECPAS	ENSG00000136813.15	ENST00000684092.1:ENST00000338205.9:ENST00000259335.8	protein_coding	protein_coding	protein_coding	protein_coding	1	70	2	3.50731	4.63554	5.76377	8.5918e-4	1.64089e-4	0.0265787	0.0116917
chr1	6529371	6529471	367863	0	-	0.51	(0.476,0.515]	chr1	43194	2	SS3_PROX	SS3_PROX:INTRON	NOL9	ENSG00000162408.11	ENST00000377705.6	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.43093	4.635275	4.83962	0.00931369	0.00480934	0.0855292	0.0602209
chr10	72711219	72711318	4450277	0	+	0.484848	(0.476,0.515]	chr10	410733	25	INTRON	INTRON	MCU	ENSG00000156026.15	ENST00000373053.8:ENST00000357157.10:ENST00000604679.5:ENST00000604372.5:ENST00000603649.5:ENST00000605597.5:ENST00000536019.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	34	2	4.43093	4.635275	4.83962	0.00931369	0.00480934	0.0855292	0.0602209
chr14	58279414	58279514	5904554	0	-	0.51	(0.476,0.515]	chr14	560819	49	INTRON	INTRON	PSMA3-AS1	ENSG00000257621.9	ENST00000554360.5:ENST00000556002.5:ENST00000555275.5:ENST00000554378.5:ENST00000555707.5:ENST00000556400.5:ENST00000557660.5:ENST00000553657.5	lncRNA	lncRNA	lncRNA	lncRNA	0	34	2	4.43093	4.635275	4.83962	0.00931369	0.00480934	0.0855292	0.0602209
chr15	65709508	65709607	6208950	0	-	0.494949	(0.476,0.515]	chr15	592533	29	INTRON	INTRON	DENND4A	ENSG00000174485.16	ENST00000443035.8:ENST00000431932.6:ENST00000635620.2:ENST00000564674.5	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.43093	4.635275	4.83962	0.00931369	0.00480934	0.0855292	0.0602209
chr19	5124520	5124619	7004991	0	+	0.515152	(0.476,0.515]	chr19	694878	43	INTRON	INTRON	KDM4B	ENSG00000127663.15	ENST00000159111.9:ENST00000611640.4:ENST00000536461.5:ENST00000589104.5:ENST00000588361.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	34	2	4.43093	4.635275	4.83962	0.00931369	0.00480934	0.0855292	0.0602209
chr3	185804261	185804361	1886141	0	-	0.48	(0.476,0.515]	chr3	188573	1056	INTRON	INTRON	IGF2BP2	ENSG00000073792.16	ENST00000382199.7:ENST00000346192.7:ENST00000457616.6:ENST00000421047.3:ENST00000461957.5:ENST00000493302.5:ENST00000466476.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	34	2	4.43093	4.635275	4.83962	0.00931369	0.00480934	0.0855292	0.0602209
chr4	123089578	123089678	2037308	0	+	0.5	(0.476,0.515]	chr4	202374	319	INTRON	INTRON	SPATA5	ENSG00000145375.9	ENST00000675612.1:ENST00000274008.5:ENST00000422835.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	34	2	4.43093	4.635275	4.83962	0.00931369	0.00480934	0.0855292	0.0602209
chr5	128082294	128082379	2716296	0	-	0.482353	(0.476,0.515]	chr5	255379	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SLC12A2-DT	ENSG00000245937.9	ENST00000499346.7:ENST00000514409.6:ENST00000657475.2:ENST00000689029.1:ENST00000687795.1:ENST00000661552.2:ENST00000660408.1:ENST00000501652.5:ENST00000501173.6:ENST00000514573.5:ENST00000508353.5:ENST00000660180.1:ENST00000659990.1:ENST00000665599.1:ENST00000501702.7:ENST00000668567.1:ENST00000657683.1:ENST00000508878.5:ENST00000656154.1:ENST00000656563.1:ENST00000663976.1:ENST00000664006.1:ENST00000663841.1:ENST00000655628.1:ENST00000654888.1:ENST00000606251.2	lncRNA	lncRNA	lncRNA	lncRNA	0	34	2	4.43093	4.635275	4.83962	0.00931369	0.00480934	0.0855292	0.0602209
chr10	50581859	50581959	4620269	0	-	0.33	(0.32,0.35]	chr10	425452	616	INTRON	INTRON	SGMS1	ENSG00000198964.14	ENST00000429490.5:ENST00000361781.7:ENST00000619438.4:ENST00000609445.5:ENST00000608287.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	36	2	4.37269	4.635185	4.89768	0.0154102	0.00793135	0.108569	0.076155
chr2	69880888	69880987	805273	0	+	0.323232	(0.32,0.35]	chr2	89863	20	UTR3	UTR3:EXON_MRNA	GMCL1	ENSG00000087338.5	ENST00000282570.4	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.37269	4.635185	4.89768	0.0154102	0.00793135	0.108569	0.076155
chr7	105780420	105780520	3607013	0	-	0.34	(0.32,0.35]	chr7	336405	186	INTRON	INTRON	ATXN7L1	ENSG00000146776.15	ENST00000419735.8:ENST00000318724.8:ENST00000478915.1	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.37269	4.635185	4.89768	0.0154102	0.00793135	0.108569	0.076155
chr1	77991655	77991755	148692	0	+	0.29	(0.28,0.32]	chr1	16574	100	INTRON	INTRON	DNAJB4	ENSG00000162616.9	ENST00000487931.1:ENST00000477671.2:ENST00000484662.1:ENST00000426517.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	36	2	4.50981	4.635059999999999	4.76031	0.0275554	0.00656106	0.123904	0.0735539
chr10	87933663	87933751	4483640	0	+	0.295455	(0.28,0.32]	chr10	412594	3	SS5_PROX	SS5_PROX:INTRON	PTEN	ENSG00000171862.12	ENST00000688308.1:ENST00000693560.1:ENST00000371953.8:ENST00000688158.1:ENST00000686459.1:ENST00000688922.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	36	2	4.50981	4.635059999999999	4.76031	0.0275554	0.00656106	0.123904	0.0735539
chr11	5673942	5674041	4899982	0	-	0.282828	(0.28,0.32]	chr11	459258	55	INTRON	INTRON	ENSG00000239920:TRIM5	ENSG00000239920.2:ENSG00000132256.20	ENST00000380259.7:ENST00000380034.8:ENST00000380027.5:ENST00000433961.5:ENST00000684655.1:ENST00000396847.7:ENST00000682968.1:ENST00000438025.5:ENST00000483835.5:ENST00000492086.5:ENST00000684417.1:ENST00000465634.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	36	2	4.50981	4.635059999999999	4.76031	0.0275554	0.00656106	0.123904	0.0735539
chr14	102631711	102631811	5822924	0	+	0.29	(0.28,0.32]	chr14	552490	380	INTRON	INTRON	RCOR1	ENSG00000089902.10	ENST00000262241.7	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.50981	4.635059999999999	4.76031	0.0275554	0.00656106	0.123904	0.0735539
chr3	184840728	184840824	1583060	0	+	0.3125	(0.28,0.32]	chr3	163842	3	INTRON	INTRON	VPS8	ENSG00000156931.16	ENST00000287546.8:ENST00000625842.3:ENST00000436792.6:ENST00000446204.6:ENST00000422105.5:ENST00000452666.3:ENST00000469479.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	36	2	4.50981	4.635059999999999	4.76031	0.0275554	0.00656106	0.123904	0.0735539
chr3	197294645	197294745	1903474	0	-	0.31	(0.28,0.32]	chr3	190678	114	INTRON	INTRON	DLG1	ENSG00000075711.21	ENST00000667157.1:ENST00000346964.6:ENST00000663148.1:ENST00000655488.1:ENST00000357674.9:ENST00000671185.1:ENST00000658701.1:ENST00000667104.1:ENST00000661336.1:ENST00000669565.1:ENST00000670455.1:ENST00000656087.1:ENST00000661453.1:ENST00000664564.1:ENST00000660432.1:ENST00000660898.1:ENST00000657381.1:ENST00000659221.1:ENST00000654737.1:ENST00000659716.1:ENST00000664991.1:ENST00000419354.5:ENST00000661440.1:ENST00000667971.1:ENST00000670935.1:ENST00000666007.1:ENST00000661229.1:ENST00000661013.1:ENST00000436682.6:ENST00000662727.1:ENST00000422288.6:ENST00000448528.6:ENST00000656944.1:ENST00000392382.6:ENST00000450955.5:ENST00000419227.5:ENST00000392381.7:ENST00000471733.5:ENST00000419553.6:ENST00000456699.6:ENST00000392380.6:ENST00000485409.5:ENST00000486877.1:ENST00000412364.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	36	2	4.50981	4.635059999999999	4.76031	0.0275554	0.00656106	0.123904	0.0735539
chrX	123872238	123872337	7716308	0	+	0.313131	(0.28,0.32]	chrX	789403	113	INTRON	INTRON	XIAP	ENSG00000101966.13	ENST00000422098.5:ENST00000481776.5:ENST00000434753.7:ENST00000497906.5:ENST00000468691.5:ENST00000430625.1:ENST00000371199.8:ENST00000497640.1:ENST00000355640.3:ENST00000468503.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	36	2	4.50981	4.635059999999999	4.76031	0.0275554	0.00656106	0.123904	0.0735539
chr12	111979785	111979885	5414228	0	-	0.32	(0.28,0.32]	chr12	517083	6	INTRON	INTRON	TMEM116	ENSG00000198270.13	ENST00000550831.7:ENST00000552374.7:ENST00000355445.7:ENST00000547878.6:ENST00000549537.6:ENST00000552801.6:ENST00000548283.6:ENST00000550800.6:ENST00000550037.5:ENST00000551297.6:ENST00000550020.6:ENST00000546537.6:ENST00000549425.5:ENST00000552839.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	37	2	4.2432	4.63493	5.02666	0.0479043	0.0027935	0.153019	0.0488769
chr15	63512965	63513065	6041984	0	+	0.3	(0.28,0.32]	chr15	575351	78	INTRON	INTRON	USP3	ENSG00000140455.17	ENST00000540797.5:ENST00000380324.8:ENST00000561442.5:ENST00000560070.5:ENST00000557884.5:ENST00000558157.5:ENST00000561326.5:ENST00000559873.5:ENST00000559192.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	37	2	4.2432	4.63493	5.02666	0.0479043	0.0027935	0.153019	0.0488769
chr1	215587583	215587683	314388	0	+	0.29	(0.28,0.32]	chr1	36239	5	INTRON	INTRON	KCTD3	ENSG00000136636.13	ENST00000259154.9	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.6061	4.634845	4.66359	0.0193496	0.0102724	0.108861	0.089002
chr12	1541029	1541128	5063065	0	+	0.313131	(0.28,0.32]	chr12	477805	97	INTRON	INTRON	WNT5B	ENSG00000111186.13	ENST00000539198.5:ENST00000545811.5	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.6061	4.634845	4.66359	0.0193496	0.0102724	0.108861	0.089002
chr12	49513305	49513405	5134424	0	+	0.32	(0.28,0.32]	chr12	484050	4	SS5_PROX	SS5_PROX:INTRON	SPATS2	ENSG00000123352.18	ENST00000549412.5:ENST00000552918.6:ENST00000553127.5:ENST00000321898.10:ENST00000552557.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	36	2	4.6061	4.634845	4.66359	0.0193496	0.0102724	0.108861	0.089002
chr12	111986369	111986469	5414294	0	-	0.31	(0.28,0.32]	chr12	517083	72	INTRON	INTRON	TMEM116	ENSG00000198270.13	ENST00000550831.7:ENST00000552374.7:ENST00000355445.7:ENST00000547878.6:ENST00000549537.6:ENST00000552801.6:ENST00000548283.6:ENST00000550800.6:ENST00000550037.5:ENST00000551297.6:ENST00000550020.6:ENST00000546537.6:ENST00000549425.5:ENST00000552839.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	36	2	4.6061	4.634845	4.66359	0.0193496	0.0102724	0.108861	0.089002
chr17	2452121	2452220	6705614	0	-	0.30303	(0.28,0.32]	chr17	656562	102	INTRON	INTRON	METTL16	ENSG00000127804.13	ENST00000263092.11:ENST00000571669.6:ENST00000576556.5:ENST00000574752.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	36	2	4.6061	4.634845	4.66359	0.0193496	0.0102724	0.108861	0.089002
chr20	62189597	62189695	7297955	0	+	0.295918	(0.28,0.32]	chr20	742320	4	INTRON	INTRON	MTG2	ENSG00000101181.18	ENST00000370823.8:ENST00000466933.1:ENST00000471352.5:ENST00000467101.5:ENST00000448254.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	36	2	4.6061	4.634845	4.66359	0.0193496	0.0102724	0.108861	0.089002
chr4	55535511	55535611	2149795	0	-	0.32	(0.28,0.32]	chr4	211545	251	INTRON	INTRON	CLOCK	ENSG00000134852.15	ENST00000513440.6:ENST00000381322.5:ENST00000435527.6:ENST00000506923.5:ENST00000509151.5:ENST00000513033.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	36	2	4.6061	4.634845	4.66359	0.0193496	0.0102724	0.108861	0.089002
chr7	134008236	134008335	3425747	0	+	0.292929	(0.28,0.32]	chr7	319452	4	SS5_PROX	SS5_PROX:INTRON	EXOC4	ENSG00000131558.15	ENST00000253861.5	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.6061	4.634845	4.66359	0.0193496	0.0102724	0.108861	0.089002
chr8	102308737	102308836	4011694	0	-	0.30303	(0.28,0.32]	chr8	367143	31	INTRON	INTRON	UBR5	ENSG00000104517.13	ENST00000520539.6:ENST00000220959.8:ENST00000521922.5	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.6061	4.634845	4.66359	0.0193496	0.0102724	0.108861	0.089002
chr20	35404161	35404260	7335131	0	-	0.515152	(0.476,0.515]	chr20	747197	96	INTRON	INTRON	UQCC1	ENSG00000101019.22	ENST00000374380.6:ENST00000374394.7:ENST00000374384.6:ENST00000359226.6:ENST00000349714.9:ENST00000457259.5:ENST00000374385.10:ENST00000453855.5:ENST00000424405.5:ENST00000443429.5:ENST00000438533.5:ENST00000397554.5:ENST00000491125.5:ENST00000491040.5:ENST00000397553.6:ENST00000495752.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	93	2	3.11021	4.634685	6.15916	5.02606e-4	1.89343e-5	0.020217099999999998	0.00354138
chr7	107529453	107529552	3612681	0	-	0.464646	(0.44,0.476]	chr7	336704	17	INTRON	INTRON	COG5	ENSG00000164597.15	ENST00000297135.9:ENST00000347053.8:ENST00000393603.7:ENST00000475638.6:ENST00000605888.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	34	2	4.33899	4.634335	4.92968	0.0206616	0.00171443	0.110999	0.0381936
chr15	65745881	65745981	6209325	0	-	0.56	(0.515,0.57]	chr15	592591	37	INTRON	INTRON	DENND4A	ENSG00000174485.16	ENST00000443035.8:ENST00000431932.6:ENST00000635620.2:ENST00000564674.5:ENST00000568515.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	33	2	4.20381	4.6342	5.06459	0.0189208	6.03964e-4	0.108861	0.0223465
chr13	41356113	41356212	5474674	0	+	0.585859	(0.57,1]	chr13	524487	5	INTRON	INTRON	NAA16	ENSG00000172766.19	ENST00000379406.8:ENST00000403412.7:ENST00000476980.5:ENST00000464857.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	26	2	4.49107	4.6341850000000004	4.7773	0.00220544	5.07088e-4	0.0417893	0.0202328
chr11	31485711	31485811	4939001	0	-	0.35	(0.32,0.35]	chr11	462597	76	INTRON	INTRON	IMMP1L	ENSG00000148950.11	ENST00000532287.6:ENST00000534812.5:ENST00000526776.5:ENST00000278200.5:ENST00000648582.1:ENST00000533642.1:ENST00000527184.5:ENST00000528161.5:ENST00000532624.5:ENST00000529749.5:ENST00000530023.5:ENST00000531693.1:ENST00000532668.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	102	2	3.36317	4.63416	5.90515	2.30541e-4	1.69213e-4	0.013917	0.0112853
chr7	131333089	131333189	3416494	0	+	0.44	(0.408,0.44]	chr7	319187	47	INTRON	INTRON	MKLN1	ENSG00000128585.18	ENST00000421797.6:ENST00000416992.6:ENST00000429546.5:ENST00000446815.5:ENST00000494286.5:ENST00000352689.11:ENST00000494785.5:ENST00000458153.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	111	2	2.96532	4.634085000000001	6.30285	2.36857e-4	1.14977e-5	0.0136195	0.00268333
chr1	28907276	28907376	58882	0	+	0.58	(0.57,1]	chr1	7617	131	INTRON	INTRON	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000647918.1:ENST00000646800.1:ENST00000644342.1:ENST00000646189.1:ENST00000482464.6:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000646260.1:ENST00000373798.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	26	2	4.56365	4.63396	4.70427	0.00129848	9.25341e-4	0.0333764	0.0278396
chr2	167871278	167871378	1258514	0	-	0.29	(0.28,0.32]	chr2	133334	9	INTRON	INTRON	B3GALT1-AS1	ENSG00000235335.3	ENST00000430546.2:ENST00000657553.1:ENST00000670221.1:ENST00000436982.2	lncRNA	lncRNA	lncRNA	lncRNA	0	37	2	4.33863	4.63396	4.92929	0.0207276	0.0098607	0.122348	0.0838128
chr4	902442	902542	2093987	0	-	0.61	(0.57,1]	chr4	206956	39	INTRON	INTRON	GAK	ENSG00000178950.18	ENST00000314167.9:ENST00000511163.5:ENST00000505819.5:ENST00000507580.5:ENST00000502656.5:ENST00000507991.1:ENST00000512325.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	26	2	4.56365	4.63396	4.70427	0.00129848	9.25341e-4	0.0333764	0.0278396
chr9	137782497	137782597	4225144	0	+	0.58	(0.57,1]	chr9	388314	1	SS5_PROX	SS5_PROX:INTRON	EHMT1	ENSG00000181090.21	ENST00000462484.5:ENST00000371394.6:ENST00000460843.6:ENST00000636027.1:ENST00000637161.1:ENST00000637261.1:ENST00000462942.3:ENST00000637891.1:ENST00000637949.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	26	2	4.56365	4.63396	4.70427	0.00129848	9.25341e-4	0.0333764	0.0278396
chr5	62529517	62529616	2364200	0	+	0.232323	[0,0.28]	chr5	227973	29	INTRON	INTRON	IPO11	ENSG00000086200.17	ENST00000424533.5:ENST00000325324.11:ENST00000409296.7:ENST00000511713.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	86	2	3.63981	4.63387	5.62793	0.0022037	8.51767e-4	0.0417893	0.0264928
chr13	30621239	30621339	5462665	0	+	0.25	[0,0.28]	chr13	523392	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	USPL1	ENSG00000132952.12	ENST00000465952.5:ENST00000255304.9:ENST00000614860.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	86	2	3.3753	4.63372	5.89214	0.00242466	9.08725e-4	0.0454587	0.0278396
chr19	36089406	36089506	7056970	0	+	0.46	(0.44,0.476]	chr19	704460	1	SS5_PROX	SS5_PROX:INTRON	WDR62	ENSG00000075702.19	ENST00000680489.1:ENST00000401500.7:ENST00000680564.1:ENST00000680590.1:ENST00000679682.1:ENST00000679714.1:ENST00000680403.1:ENST00000679757.1:ENST00000680806.1:ENST00000679858.1:ENST00000681625.1:ENST00000587391.6:ENST00000270301.12:ENST00000680858.1:ENST00000680377.1:ENST00000681302.1:ENST00000679489.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	34	2	4.43525	4.633635	4.83202	0.00897296	0.00525002	0.0849778	0.0633615
chr3	124745281	124745381	1491604	0	+	0.46	(0.44,0.476]	chr3	155843	13	UTR3	UTR3:EXON_MRNA	UMPS	ENSG00000114491.14	ENST00000232607.7	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.43525	4.633635	4.83202	0.00897296	0.00525002	0.0849778	0.0633615
chr3	172092979	172093079	1560078	0	+	0.47	(0.44,0.476]	chr3	161527	457	INTRON	INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000421757.5:ENST00000469491.5:ENST00000336824.8:ENST00000423424.5:ENST00000416957.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	34	2	4.43525	4.633635	4.83202	0.00897296	0.00525002	0.0849778	0.0633615
chr7	40030568	40030667	3311433	0	+	0.474747	(0.44,0.476]	chr7	307507	282	INTRON	INTRON	CDK13	ENSG00000065883.17	ENST00000340829.10:ENST00000181839.10:ENST00000613626.4:ENST00000646039.1:ENST00000643859.1:ENST00000484589.2:ENST00000643915.1:ENST00000647453.1:ENST00000645470.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	34	2	4.43525	4.633635	4.83202	0.00897296	0.00525002	0.0849778	0.0633615
chr12	121327822	121327920	5436929	0	-	0.418367	(0.408,0.44]	chr12	519876	7	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	ANAPC5	ENSG00000089053.13	ENST00000261819.8:ENST00000535641.5:ENST00000541887.5:ENST00000534976.5:ENST00000441917.6:ENST00000539079.5:ENST00000544314.5:ENST00000535482.1:ENST00000545218.5:ENST00000535472.5:ENST00000538334.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	71	2	3.97074	4.633430000000001	5.29612	0.00113523	8.66152e-5	0.0307488	0.00783027
chr11	20406726	20406825	4751115	0	+	0.383838	(0.378,0.408]	chr11	440011	14	EXON_MRNA	EXON_MRNA:INTRON	PRMT3	ENSG00000185238.13	ENST00000330796.9:ENST00000331079.11:ENST00000437750.2:ENST00000529592.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	72	2	3.93712	4.6334	5.32968	0.00119786	1.09377e-4	0.0315806	0.00884858
chr6	36443626	36443723	2853919	0	+	0.381443	(0.378,0.408]	chr6	269698	2	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	KCTD20	ENSG00000112078.14	ENST00000536244.5:ENST00000373731.7:ENST00000483557.5:ENST00000443316.2:ENST00000474988.5:ENST00000498267.5:ENST00000481911.5:ENST00000449081.6:ENST00000265344.8:ENST00000460983.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	72	2	3.93712	4.6334	5.32968	0.00119786	1.09377e-4	0.0315806	0.00884858
chr9	131466765	131466864	4217709	0	+	0.464646	(0.44,0.476]	chr9	386784	13	INTRON	INTRON	PRRC2B	ENSG00000288701.1	ENST00000684596.1:ENST00000683519.1:ENST00000682501.1:ENST00000684736.1	protein_coding	protein_coding	protein_coding	protein_coding	1	70	2	3.8666	4.6333	5.4	7.02611e-4	1.50865e-4	0.024224	0.0106137
chr22	37872777	37872877	7511932	0	+	0.4	(0.378,0.408]	chr22	767200	16	INTRON	INTRON	EIF3L	ENSG00000100129.18	ENST00000412331.6:ENST00000624234.3:ENST00000381683.10:ENST00000652021.1:ENST00000477256.5:ENST00000406934.5:ENST00000482600.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	35	2	4.21563	4.6332699999999996	5.05091	0.0315429	0.00118558	0.13151	0.031662
chr11	134346859	134346953	4887099	0	+	0.56383	(0.515,0.57]	chr11	457148	6	EXON_LNCRNA	EXON_LNCRNA:SS3_PROX:INTRON	GLB1L2	ENSG00000149328.15	ENST00000339772.9:ENST00000535456.7:ENST00000529077.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	33	2	4.28921	4.633215	4.97722	0.00990051	0.00168681	0.0877296	0.0370386
chr9	131422304	131422404	4217252	0	+	0.52	(0.515,0.57]	chr9	386720	277	INTRON	INTRON	PRRC2B	ENSG00000288701.1	ENST00000682525.1:ENST00000684596.1:ENST00000683519.1:ENST00000682501.1	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.28921	4.633215	4.97722	0.00990051	0.00168681	0.0877296	0.0370386
chr16	23497970	23498069	6464462	0	-	0.474747	(0.44,0.476]	chr16	623900	18	INTRON	INTRON	GGA2	ENSG00000103365.15	ENST00000309859.8:ENST00000567468.5:ENST00000570111.5:ENST00000568799.1:ENST00000563494.5:ENST00000569300.5:ENST00000569189.2:ENST00000563047.1:ENST00000562944.5:ENST00000562117.1:ENST00000566547.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	70	2	3.45957	4.63302	5.80647	0.00106385	1.22335e-4	0.0300133	0.00993581
chr1	247155382	247155480	683703	0	-	0.204082	[0,0.28]	chr1	80156	5	UTR3	UTR3:EXON_MRNA:INTRON	ZNF124	ENSG00000196418.13	ENST00000472531.5:ENST00000491356.5:ENST00000543802.3	protein_coding	protein_coding	protein_coding	protein_coding	0	42	2	3.96122	4.6327300000000005	5.30424	0.0617993	0.00584781	0.193423	0.0667594
chr1	31029862	31029962	412537	0	-	0.44	(0.408,0.44]	chr1	49733	6	INTRON	INTRON	PUM1	ENSG00000134644.16	ENST00000426105.7:ENST00000373747.7:ENST00000257075.9:ENST00000424085.6:ENST00000525843.5:ENST00000440538.6:ENST00000373741.8:ENST00000373742.6:ENST00000526215.5:ENST00000525948.5:ENST00000480602.1:ENST00000524516.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	74	2	4.18519	4.63251	5.07983	0.00247652	2.59215e-5	0.0446195	0.00400663
chr6	110996782	110996882	2939451	0	+	0.4	(0.378,0.408]	chr6	276860	2	SS3_PROX	SS3_PROX:INTRON	RPF2	ENSG00000197498.13	ENST00000368864.8:ENST00000441448.7:ENST00000607388.1:ENST00000425871.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	124	2	2.89268	4.632425	6.37217	5.52484e-4	1.40499e-6	0.0216254	7.04076e-4
chr1	2232087	2232185	2203	0	+	0.55102	(0.515,0.57]	chr1	549	20	INTRON	INTRON	SKI	ENSG00000157933.10	ENST00000378536.5	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.41498	4.63217	4.84936	0.0106866	0.00146032	0.0861859	0.0349875
chrX	41117775	41117875	7644385	0	+	0.53	(0.515,0.57]	chrX	782230	313	INTRON	INTRON	USP9X	ENSG00000124486.14	ENST00000324545.9:ENST00000378308.7	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.41498	4.63217	4.84936	0.0106866	0.00146032	0.0861859	0.0349875
chr7	56042647	56042747	3536412	0	-	0.4	(0.378,0.408]	chr7	329832	1	SS5_PROX	SS5_PROX:INTRON	PSPH	ENSG00000146733.14	ENST00000437355.6:ENST00000275605.8:ENST00000395471.7:ENST00000421312.5:ENST00000419984.6:ENST00000424596.1:ENST00000416592.1:ENST00000413218.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	35	2	4.32174	4.6321200000000005	4.9425	0.0132362	0.00452675	0.0999551	0.0595107
chrX	283823	283914	7605288	0	+	0.362637	(0.35,0.378]	chrX	779385	2	UTR5	UTR5:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PLCXD1	ENSG00000182378.15	ENST00000399012.6:ENST00000484611.7:ENST00000430923.7:ENST00000445062.6:ENST00000429181.6:ENST00000381657.8:ENST00000443019.6:ENST00000415337.6:ENST00000447472.6:ENST00000448477.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	73	2	3.49967	4.632085	5.7645	9.80974e-4	2.7432e-4	0.0287765	0.0151711
chr17	67191435	67191531	6825282	0	-	0.416667	(0.408,0.44]	chr17	674506	7	INTRON	INTRON	HELZ	ENSG00000198265.12	ENST00000358691.10:ENST00000579953.5:ENST00000580168.5:ENST00000417253.7:ENST00000580662.5	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:nonsense_mediated_decay:processed_transcript	1	73	2	4.1271	4.63206	5.13702	0.00202889	3.62655e-5	0.04086	0.00482747
chr7	74759250	74759349	3336317	0	+	0.363636	(0.35,0.378]	chr7	310546	5	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GTF2I	ENSG00000263001.8	ENST00000650807.1:ENST00000690345.1:ENST00000573035.6:ENST00000614986.4:ENST00000620879.4:ENST00000621734.4:ENST00000621040.4:ENST00000614048.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	110	2	2.59656	4.632045	6.66753	0.00638551	3.19157e-7	0.0693551	2.83872e-4
chr1	86992626	86992726	154375	0	+	0.41	(0.408,0.44]	chr1	16969	172	INTRON	INTRON	HS2ST1	ENSG00000153936.18	ENST00000370550.10:ENST00000370551.8:ENST00000687893.1:ENST00000693745.1:ENST00000689904.1:ENST00000690674.1:ENST00000591456.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	75	2	3.62972	4.63183	5.63394	7.19047e-4	7.78928e-5	0.0246202	0.00735438
chr15	82604128	82604228	6248067	0	-	0.52	(0.515,0.57]	chr15	596252	203	INTRON	INTRON	CPEB1	ENSG00000214575.10	ENST00000684509.1:ENST00000614918.4:ENST00000611031.4:ENST00000617958.4:ENST00000615198.4:ENST00000620182.4:ENST00000617522.4:ENST00000569257.5:ENST00000567678.1	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.50102	4.631729999999999	4.76244	0.00510768	0.00362147	0.0646039	0.0533855
chr6	4907444	4907544	2792175	0	+	0.55	(0.515,0.57]	chr6	263614	147	INTRON	INTRON	CDYL	ENSG00000153046.18	ENST00000328908.9:ENST00000440139.5:ENST00000397588.8:ENST00000472453.5:ENST00000449732.6:ENST00000343762.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	32	2	4.50102	4.631729999999999	4.76244	0.00510768	0.00362147	0.0646039	0.0533855
chr5	33456627	33456727	2335292	0	+	0.29	(0.28,0.32]	chr5	225454	4	SS5_PROX	SS5_PROX:INTRON	TARS1	ENSG00000113407.14	ENST00000502553.5:ENST00000508361.5:ENST00000265112.8:ENST00000455217.6:ENST00000507716.5:ENST00000509731.5:ENST00000504698.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	164	2	3.38892	4.6315800000000005	5.87424	4.43011e-4	1.08543e-5	0.0194241	0.00242168
chr1	150852261	150852361	552741	0	-	0.43	(0.408,0.44]	chr1	65007	1	SS5_PROX	SS5_PROX:INTRON	ARNT	ENSG00000143437.21	ENST00000358595.10:ENST00000471844.6:ENST00000354396.6:ENST00000515192.5:ENST00000505755.5:ENST00000497108.6:ENST00000505979.5:ENST00000504358.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	34	2	4.33238	4.63131	4.93024	0.0218901	0.00170369	0.11491	0.0381936
chr17	57674717	57674817	6636960	0	+	0.44	(0.408,0.44]	chr17	648124	4	SS3_PROX	SS3_PROX:INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000675656.1:ENST00000442934.6:ENST00000579505.5:ENST00000675379.1:ENST00000675127.1:ENST00000579466.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	34	2	4.33238	4.63131	4.93024	0.0218901	0.00170369	0.11491	0.0381936
chr2	36887425	36887525	1093806	0	-	0.41	(0.408,0.44]	chr2	117185	2	INTRON	INTRON	STRN	ENSG00000115808.12	ENST00000263918.9:ENST00000379213.3:ENST00000495595.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	34	2	4.33238	4.63131	4.93024	0.0218901	0.00170369	0.11491	0.0381936
chr5	103262652	103262750	2441044	0	+	0.418367	(0.408,0.44]	chr5	234371	25	INTRON	INTRON	MACIR	ENSG00000181751.10	ENST00000319933.7:ENST00000515669.5:ENST00000510890.1	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.33238	4.63131	4.93024	0.0218901	0.00170369	0.11491	0.0381936
chr22	28546360	28546460	7571599	0	-	0.55	(0.515,0.57]	chr22	774287	1034	INTRON	INTRON	TTC28	ENSG00000100154.15	ENST00000397906.7	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.04086	4.6311350000000004	5.22141	0.0197045	6.44141e-4	0.120063	0.0231685
chrX	3841840	3841939	7746999	0	-	0.545455	(0.515,0.57]	chrX	793085	121	INTRON	INTRON	ENSG00000285756	ENSG00000285756.2	ENST00000648217.1:ENST00000425492.5:ENST00000662024.1:ENST00000490920.2:ENST00000475317.5:ENST00000671583.1	lncRNA	lncRNA	lncRNA	lncRNA	0	35	2	4.04086	4.6311350000000004	5.22141	0.0197045	6.44141e-4	0.120063	0.0231685
chr2	71408513	71408601	807813	0	+	0.352273	(0.35,0.378]	chr2	90282	4	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	ZNF638	ENSG00000075292.19	ENST00000409544.5:ENST00000264447.9:ENST00000487638.5:ENST00000494241.5:ENST00000409407.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	75	2	4.00097	4.63111	5.26125	0.00191117	8.64759e-5	0.03947	0.00783027
chr4	82897579	82897670	2180177	0	-	0.483516	(0.476,0.515]	chr4	214419	2	SS5_PROX	SS5_PROX:INTRON	SEC31A:THAP9-AS1	ENSG00000138674.17:ENSG00000251022.6	ENST00000355196.6:ENST00000503210.5:ENST00000507676.5:ENST00000506495.5:ENST00000507051.1:ENST00000504520.6:ENST00000504792.6:ENST00000512932.5:ENST00000511271.5:ENST00000508772.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	1	70	2	3.44784	4.6310199999999995	5.8142	0.00113238	1.0551e-4	0.0308465	0.00920724
chr12	24894975	24895074	5297367	0	-	0.373737	(0.35,0.378]	chr12	503871	1	INTRON	INTRON	BCAT1	ENSG00000060982.15	ENST00000261192.12:ENST00000538118.5:ENST00000342945.9:ENST00000539282.5:ENST00000539780.5:ENST00000544418.1:ENST00000546285.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	35	2	4.29839	4.630845000000001	4.9633	0.0294717	0.00198929	0.128055	0.0411469
chr1	70308676	70308775	480406	0	-	0.424242	(0.408,0.44]	chr1	57746	20	INTRON	INTRON	ANKRD13C	ENSG00000118454.13	ENST00000370944.9:ENST00000262346.6:ENST00000490846.5:ENST00000498735.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	34	2	4.4358	4.63055	4.8253	0.00893097	0.0056738	0.0849778	0.0653997
chr11	10802535	10802633	4915225	0	-	0.428571	(0.408,0.44]	chr11	460563	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	EIF4G2	ENSG00000110321.19	ENST00000526148.6:ENST00000525681.6:ENST00000339995.11:ENST00000532383.5:ENST00000396525.7:ENST00000531416.6:ENST00000531647.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	34	2	4.4358	4.63055	4.8253	0.00893097	0.0056738	0.0849778	0.0653997
chr13	95078346	95078446	5637621	0	-	0.43	(0.408,0.44]	chr13	537039	24	INTRON	INTRON	ABCC4	ENSG00000125257.16	ENST00000645237.2:ENST00000643051.1:ENST00000643842.1:ENST00000646439.1:ENST00000644880.1:ENST00000643816.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	34	2	4.4358	4.63055	4.8253	0.00893097	0.0056738	0.0849778	0.0653997
chr16	81485067	81485167	6405400	0	+	0.42	(0.408,0.44]	chr16	615026	392	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.4358	4.63055	4.8253	0.00893097	0.0056738	0.0849778	0.0653997
chr17	8483260	8483357	6720515	0	-	0.43299	(0.408,0.44]	chr17	659480	20	EXON_MRNA	EXON_MRNA:INTRON	MYH10	ENSG00000133026.14	ENST00000379980.8:ENST00000269243.8:ENST00000688902.1:ENST00000684843.1:ENST00000687178.1:ENST00000692526.1:ENST00000688497.1:ENST00000685418.1:ENST00000693441.1:ENST00000686654.1:ENST00000360416.8:ENST00000691566.1:ENST00000686521.1:ENST00000685631.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	34	2	4.4358	4.63055	4.8253	0.00893097	0.0056738	0.0849778	0.0653997
chr17	75370591	75370691	6837447	0	-	0.43	(0.408,0.44]	chr17	675716	374	INTRON	INTRON	GRB2	ENSG00000177885.15	ENST00000316615.9:ENST00000316804.10:ENST00000392562.5:ENST00000392564.5:ENST00000392563.5:ENST00000648046.1:ENST00000578961.5:ENST00000582582.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	34	2	4.4358	4.63055	4.8253	0.00893097	0.0056738	0.0849778	0.0653997
chr19	52272197	52272296	7094706	0	+	0.414141	(0.408,0.44]	chr19	711251	22	INTRON	INTRON	ZNF766	ENSG00000196214.11	ENST00000439461.6:ENST00000593703.1:ENST00000599581.5:ENST00000601711.5	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.4358	4.63055	4.8253	0.00893097	0.0056738	0.0849778	0.0653997
chr7	149483534	149483634	3671691	0	-	0.44	(0.408,0.44]	chr7	340777	54	INTRON	INTRON	ZNF746	ENSG00000181220.18	ENST00000644635.1:ENST00000340622.8:ENST00000458143.7:ENST00000685153.1	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.4358	4.63055	4.8253	0.00893097	0.0056738	0.0849778	0.0653997
chr8	9676271	9676371	3700710	0	+	0.43	(0.408,0.44]	chr8	343207	47	INTRON	INTRON	TNKS	ENSG00000173273.16	ENST00000310430.11:ENST00000520408.5:ENST00000518281.5:ENST00000518027.5:ENST00000521039.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	34	2	4.4358	4.63055	4.8253	0.00893097	0.0056738	0.0849778	0.0653997
chrX	123896336	123896434	7716553	0	+	0.428571	(0.408,0.44]	chrX	789429	32	INTRON	INTRON	XIAP	ENSG00000101966.13	ENST00000481776.5:ENST00000434753.7:ENST00000497906.5:ENST00000468691.5:ENST00000371199.8:ENST00000497640.1:ENST00000355640.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	34	2	4.4358	4.63055	4.8253	0.00893097	0.0056738	0.0849778	0.0653997
chr1	37543176	37543275	424155	0	-	0.353535	(0.35,0.378]	chr1	51278	17	INTRON	INTRON	SNIP1	ENSG00000163877.11	ENST00000296215.8:ENST00000468040.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	35	2	4.40128	4.629989999999999	4.8587	0.0120289	0.00695662	0.0962115	0.0718189
chr6	36485420	36485516	2854351	0	+	0.364583	(0.35,0.378]	chr6	269758	2	INTRON	INTRON	KCTD20	ENSG00000112078.14	ENST00000536244.5:ENST00000373731.7:ENST00000474988.5:ENST00000481911.5:ENST00000449081.6:ENST00000265344.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	35	2	4.40128	4.629989999999999	4.8587	0.0120289	0.00695662	0.0962115	0.0718189
chr6	122504073	122504173	2947992	0	+	0.36	(0.35,0.378]	chr6	277524	107	INTRON	INTRON	PKIB	ENSG00000135549.16	ENST00000615438.4:ENST00000392491.6:ENST00000608895.5:ENST00000618977.4:ENST00000583007.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	35	2	4.40128	4.629989999999999	4.8587	0.0120289	0.00695662	0.0962115	0.0718189
chr1	197142130	197142230	613664	0	-	0.34	(0.32,0.35]	chr1	72676	4	SS5_PROX	SS5_PROX:INTRON	ASPM	ENSG00000066279.19	ENST00000367409.9:ENST00000680265.1:ENST00000294732.11:ENST00000680710.1:ENST00000681879.1:ENST00000679766.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	35	2	4.53988	4.62979	4.7197	0.0202178	0.00568521	0.109913	0.0678837
chr10	87510429	87510528	4482476	0	+	0.333333	(0.32,0.35]	chr10	412504	15	INTRON	INTRON	MINPP1	ENSG00000107789.16	ENST00000371994.8:ENST00000371996.9:ENST00000536010.1	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.53988	4.62979	4.7197	0.0202178	0.00568521	0.109913	0.0678837
chr2	189567279	189567377	1296439	0	-	0.346939	(0.32,0.35]	chr2	135702	13	INTRON	INTRON	SLC40A1	ENSG00000138449.11	ENST00000261024.7:ENST00000427241.5	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.53988	4.62979	4.7197	0.0202178	0.00568521	0.109913	0.0678837
chr3	179175162	179175262	1566069	0	+	0.34	(0.32,0.35]	chr3	161904	251	INTRON	INTRON	PIK3CA	ENSG00000121879.6	ENST00000477735.1:ENST00000263967.4:ENST00000643187.1:ENST00000675786.1:ENST00000468036.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	35	2	4.53988	4.62979	4.7197	0.0202178	0.00568521	0.109913	0.0678837
chr8	99157243	99157342	3812716	0	+	0.333333	(0.32,0.35]	chr8	353158	1	INTRON	INTRON	VPS13B	ENSG00000132549.20	ENST00000496144.5:ENST00000683334.1:ENST00000682853.1:ENST00000357162.7:ENST00000358544.7:ENST00000683619.1:ENST00000683869.1:ENST00000682153.1:ENST00000682358.1:ENST00000682145.1:ENST00000355155.6:ENST00000682234.1:ENST00000683486.1:ENST00000684308.1:ENST00000521932.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	35	2	4.53988	4.62979	4.7197	0.0202178	0.00568521	0.109913	0.0678837
chrX	44904385	44904485	7648914	0	+	0.35	(0.32,0.35]	chrX	782726	300	INTRON	INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000675440.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000621147.5:ENST00000475233.1:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	105	2	3.59372	4.62969	5.66566	6.06695e-4	4.81573e-5	0.0226059	0.00566695
chr11	105447342	105447441	5029694	0	-	0.343434	(0.32,0.35]	chr11	474017	1787	INTRON	INTRON	CARD18	ENSG00000255501.3	ENST00000649856.1:ENST00000528811.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	35	2	4.61889	4.629675000000001	4.64046	0.0166646	0.00724767	0.102621	0.0756327
chr5	105182899	105182999	2694255	0	-	0.35	(0.32,0.35]	chr5	254244	1736	INTRON	INTRON	ENSG00000251574:ENSG00000253584	ENSG00000251574.8:ENSG00000253584.1	ENST00000503650.1:ENST00000522464.1	lncRNA	lncRNA	lncRNA	lncRNA	0	35	2	4.61889	4.629675000000001	4.64046	0.0166646	0.00724767	0.102621	0.0756327
chr5	128064236	128064336	2716113	0	-	0.34	(0.32,0.35]	chr5	255363	1	SS5_PROX	SS5_PROX:INTRON	SLC12A2-DT	ENSG00000245937.9	ENST00000499346.7:ENST00000514409.6:ENST00000661296.1:ENST00000657475.2:ENST00000689029.1:ENST00000687795.1:ENST00000661552.2:ENST00000660408.1:ENST00000501652.5:ENST00000501173.6:ENST00000514573.5:ENST00000508353.5:ENST00000660180.1:ENST00000659990.1:ENST00000665599.1:ENST00000501702.7:ENST00000668567.1:ENST00000657683.1:ENST00000668265.1:ENST00000508878.5:ENST00000656154.1:ENST00000656563.1:ENST00000663976.1:ENST00000664006.1:ENST00000663841.1:ENST00000655628.1:ENST00000654888.1:ENST00000606251.2	lncRNA	lncRNA	lncRNA	lncRNA	0	35	2	4.61889	4.629675000000001	4.64046	0.0166646	0.00724767	0.102621	0.0756327
chrX	41098496	41098596	7644192	0	+	0.35	(0.32,0.35]	chrX	782230	120	INTRON	INTRON	USP9X	ENSG00000124486.14	ENST00000324545.9:ENST00000378308.7	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.61889	4.629675000000001	4.64046	0.0166646	0.00724767	0.102621	0.0756327
chrX	119850394	119850494	7874443	0	-	0.34	(0.32,0.35]	chrX	801945	47	INTRON	INTRON	UPF3B	ENSG00000125351.13	ENST00000276201.7:ENST00000345865.6	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.61889	4.629675000000001	4.64046	0.0166646	0.00724767	0.102621	0.0756327
chr5	138469115	138469209	2495861	0	+	0.329787	(0.32,0.35]	chr5	238660	12	UTR3	UTR3:EXON_MRNA	EGR1	ENSG00000120738.8	ENST00000239938.5	protein_coding	protein_coding	protein_coding	protein_coding	1	82	2	3.31533	4.62959	5.94385	0.00323121	3.75519e-5	0.0507087	0.00490694
chr7	105539127	105539226	3375755	0	+	0.353535	(0.35,0.378]	chr7	316053	20	INTRON	INTRON	RINT1	ENSG00000135249.8	ENST00000467392.5:ENST00000482041.5:ENST00000493041.5:ENST00000257700.7:ENST00000497979.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	117	2	3.12201	4.62944	6.13687	1.12452e-4	5.13037e-5	0.00904963	0.0062158
chr1	8576201	8576300	371362	0	-	0.383838	(0.378,0.408]	chr1	43517	183	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000400907.6:ENST00000656437.1:ENST00000659924.1:ENST00000480342.5:ENST00000469251.1:ENST00000514428.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	34	2	4.41169	4.62898	4.84627	0.0199606	0.00254319	0.109608	0.0465056
chr11	3911367	3911467	4724023	0	+	0.4	(0.378,0.408]	chr11	437138	74	INTRON	INTRON	STIM1	ENSG00000167323.12	ENST00000525403.5:ENST00000526596.2:ENST00000300737.8:ENST00000616714.4:ENST00000527651.5:ENST00000532610.5:ENST00000532919.5:ENST00000530554.5:ENST00000524822.5:ENST00000528656.5:ENST00000525055.5	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.41169	4.62898	4.84627	0.0199606	0.00254319	0.109608	0.0465056
chr15	40166782	40166882	6001305	0	+	0.38	(0.378,0.408]	chr15	570586	3	SS5_PROX	SS5_PROX:INTRON	BUB1B	ENSG00000156970.13	ENST00000560120.5:ENST00000559414.5:ENST00000412359.7:ENST00000558715.5:ENST00000287598.11	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	34	2	4.41169	4.62898	4.84627	0.0199606	0.00254319	0.109608	0.0465056
chr6	125809138	125809238	2954555	0	+	0.38	(0.378,0.408]	chr6	277835	120	INTRON	INTRON	NCOA7	ENSG00000111912.20	ENST00000368357.7:ENST00000417494.5:ENST00000453302.5:ENST00000392477.7:ENST00000229634.13	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.41169	4.62898	4.84627	0.0199606	0.00254319	0.109608	0.0465056
chr1	90972152	90972252	502027	0	-	0.31	(0.28,0.32]	chr1	59492	305	INTRON	INTRON	ZNF644	ENSG00000122482.22	ENST00000370440.5:ENST00000337393.10:ENST00000347275.9:ENST00000361321.5:ENST00000467231.5:ENST00000498303.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	36	2	4.4263	4.6289750000000005	4.83165	0.0330296	0.00527257	0.133816	0.0656295
chr10	93507156	93507256	4493862	0	+	0.32	(0.28,0.32]	chr10	413854	1	SS5_PROX	SS5_PROX:INTRON	CEP55	ENSG00000138180.16	ENST00000371485.8:ENST00000445435.1	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.4263	4.6289750000000005	4.83165	0.0330296	0.00527257	0.133816	0.0656295
chr16	74638669	74638769	6525515	0	-	0.3	(0.28,0.32]	chr16	631890	3	INTRON	INTRON	RFWD3	ENSG00000168411.14	ENST00000361070.9:ENST00000571750.5:ENST00000575281.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	36	2	4.4263	4.6289750000000005	4.83165	0.0330296	0.00527257	0.133816	0.0656295
chr2	167880164	167880263	1258603	0	-	0.30303	(0.28,0.32]	chr2	133334	98	INTRON	INTRON	B3GALT1-AS1	ENSG00000235335.3	ENST00000430546.2:ENST00000657553.1:ENST00000670221.1:ENST00000436982.2	lncRNA	lncRNA	lncRNA	lncRNA	0	36	2	4.4263	4.6289750000000005	4.83165	0.0330296	0.00527257	0.133816	0.0656295
chr7	10699016	10699116	3483770	0	-	0.32	(0.28,0.32]	chr7	325772	1371	INTRON	INTRON	MGC4859	ENSG00000283117.1	ENST00000634803.1	lncRNA	lncRNA	lncRNA	lncRNA	0	36	2	4.4263	4.6289750000000005	4.83165	0.0330296	0.00527257	0.133816	0.0656295
chr7	92323457	92323556	3353572	0	+	0.282828	(0.28,0.32]	chr7	312505	36	INTRON	INTRON	ANKIB1	ENSG00000001629.10	ENST00000265742.8:ENST00000439883.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	36	2	4.4263	4.6289750000000005	4.83165	0.0330296	0.00527257	0.133816	0.0656295
chr4	82373118	82373150	2177531	0	-	0.625	(0.57,1]	chr4	214155	1	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	HNRNPD	ENSG00000138668.19	ENST00000313899.12:ENST00000353341.8:ENST00000352301.8:ENST00000513584.1:ENST00000509263.5:ENST00000507010.5:ENST00000515432.1:ENST00000503822.1:ENST00000509107.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	61	2	3.63273	4.62882	5.62491	1.27941e-5	6.73465e-6	0.00265999	0.00194394
chr2	235983516	235983616	1046250	0	+	0.3	(0.28,0.32]	chr2	111314	145	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000336665.9:ENST00000635100.1:ENST00000409538.5:ENST00000614409.4:ENST00000428334.6:ENST00000448025.5:ENST00000418654.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	36	2	4.52233	4.628535	4.73474	0.0162835	0.0129279	0.101453	0.0990564
chr4	150333895	150333995	2264893	0	-	0.31	(0.28,0.32]	chr4	220626	76	INTRON	INTRON	LRBA	ENSG00000198589.14	ENST00000357115.9:ENST00000651943.2:ENST00000510413.5:ENST00000503716.5:ENST00000509835.5:ENST00000648823.1:ENST00000648626.1:ENST00000651695.1:ENST00000648878.1:ENST00000651035.1:ENST00000507224.5:ENST00000649874.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	36	2	4.52233	4.628535	4.73474	0.0162835	0.0129279	0.101453	0.0990564
chr5	171937200	171937300	2772044	0	-	0.3	(0.28,0.32]	chr5	260947	224	INTRON	INTRON	FBXW11	ENSG00000072803.18	ENST00000296933.10:ENST00000517395.6:ENST00000265094.9:ENST00000393802.6:ENST00000523843.5:ENST00000519693.5:ENST00000520376.1:ENST00000518752.1:ENST00000522507.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	36	2	4.52233	4.628535	4.73474	0.0162835	0.0129279	0.101453	0.0990564
chr1	22070891	22070989	42387	0	+	0.397959	(0.378,0.408]	chr1	5090	12	INTRON	INTRON	ENSG00000289694:CDC42	ENSG00000289694.1:ENSG00000070831.18	ENST00000695855.1:ENST00000695856.1:ENST00000344548.8:ENST00000400259.5:ENST00000667384.2:ENST00000411827.2:ENST00000695858.1:ENST00000695857.1:ENST00000315554.14:ENST00000695859.1:ENST00000498236.1:ENST00000656825.1:ENST00000651171.1:ENST00000652582.1:ENST00000695860.1:ENST00000695796.1:ENST00000695797.1:ENST00000662562.2:ENST00000695798.1:ENST00000695799.1:ENST00000695800.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	34	2	4.51854	4.628465	4.73839	0.00837252	0.00748824	0.0774402	0.0772645
chr10	874298	874398	4542009	0	-	0.38	(0.378,0.408]	chr10	419281	12	INTRON	INTRON	LARP4B	ENSG00000107929.16	ENST00000316157.8:ENST00000690516.1:ENST00000476529.5:ENST00000406525.6:ENST00000481118.1:ENST00000412411.1:ENST00000693234.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	34	2	4.51854	4.628465	4.73839	0.00837252	0.00748824	0.0774402	0.0772645
chr15	57279849	57279949	6035756	0	+	0.38	(0.378,0.408]	chr15	574805	62	INTRON	INTRON	TCF12	ENSG00000140262.18	ENST00000438423.6:ENST00000267811.9:ENST00000333725.10:ENST00000560190.5:ENST00000559609.5:ENST00000557843.5:ENST00000543579.5:ENST00000537840.5:ENST00000343827.7:ENST00000559710.5:ENST00000559703.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	34	2	4.51854	4.628465	4.73839	0.00837252	0.00748824	0.0774402	0.0772645
chr17	60606935	60607034	6644534	0	+	0.393939	(0.378,0.408]	chr17	648916	18	INTRON	INTRON	PPM1D	ENSG00000170836.13	ENST00000305921.8:ENST00000693102.1:ENST00000685212.1:ENST00000693196.1:ENST00000392995.7:ENST00000685582.1:ENST00000688505.1:ENST00000629650.3:ENST00000687355.1:ENST00000686064.1:ENST00000689445.1:ENST00000590418.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	34	2	4.51854	4.628465	4.73839	0.00837252	0.00748824	0.0774402	0.0772645
chr2	226959781	226959881	1024913	0	+	0.39	(0.378,0.408]	chr2	109477	240	INTRON	INTRON	RHBDD1	ENSG00000144468.17	ENST00000341329.7:ENST00000392062.7:ENST00000409053.1:ENST00000491490.5:ENST00000493526.1:ENST00000483268.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	34	2	4.51854	4.628465	4.73839	0.00837252	0.00748824	0.0774402	0.0772645
chr5	39015762	39015861	2605061	0	-	0.383838	(0.378,0.408]	chr5	247890	118	INTRON	INTRON	RICTOR	ENSG00000164327.13	ENST00000357387.8:ENST00000511516.5:ENST00000296782.9:ENST00000510711.5:ENST00000513566.1:ENST00000514735.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	34	2	4.51854	4.628465	4.73839	0.00837252	0.00748824	0.0774402	0.0772645
chr8	116750870	116750970	4034183	0	-	0.4	(0.378,0.408]	chr8	368079	132	INTRON	INTRON	EIF3H	ENSG00000147677.12	ENST00000521861.6:ENST00000276682.8:ENST00000518949.5:ENST00000518995.5:ENST00000522800.5:ENST00000518034.5:ENST00000517974.1:ENST00000522453.1:ENST00000519046.5:ENST00000520813.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	34	2	4.51854	4.628465	4.73839	0.00837252	0.00748824	0.0774402	0.0772645
chr7	128330219	128330318	3635118	0	-	0.323232	(0.32,0.35]	chr7	337871	40	INTRON	INTRON	RBM28	ENSG00000106344.8	ENST00000223073.6:ENST00000415472.6:ENST00000487602.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	76	2	3.79033	4.628375	5.46642	0.00127669	2.87593e-4	0.0326395	0.0150609
chr19	40243167	40243263	7183314	0	-	0.5	(0.476,0.515]	chr19	726478	6	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	AKT2	ENSG00000105221.18	ENST00000392038.7:ENST00000424901.5:ENST00000476266.5:ENST00000391844.8:ENST00000584288.5:ENST00000311278.10:ENST00000579047.5:ENST00000578615.6:ENST00000601166.5:ENST00000492463.6:ENST00000537834.5:ENST00000491778.6:ENST00000578975.1:ENST00000487537.3:ENST00000441941.6:ENST00000672879.1:ENST00000486368.6:ENST00000596634.5:ENST00000452077.5:ENST00000392037.5:ENST00000416362.5:ENST00000578123.5:ENST00000672890.1:ENST00000423127.5:ENST00000358335.9:ENST00000456441.5:ENST00000583859.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	35	2	4.13586	4.62829	5.12072	0.031846	8.42139e-4	0.13151	0.0263691
chr1	474363	474463	355293	0	-	0.23	[0,0.28]	chr1	40950	941	INTRON	INTRON	ENSG00000237094	ENSG00000237094.12	ENST00000455207.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	37	2	4.5461	4.628135	4.71017	0.0365918	0.0114708	0.138959	0.0956037
chr1	15920669	15920769	35401	0	+	0.24	[0,0.28]	chr1	4301	4	SS3_PROX	SS3_PROX:INTRON	SPEN	ENSG00000065526.12	ENST00000673875.1:ENST00000375759.8:ENST00000442985.1	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	4.5461	4.628135	4.71017	0.0365918	0.0114708	0.138959	0.0956037
chr10	96907918	96908004	4503727	0	+	0.267442	[0,0.28]	chr10	414559	3	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	LCOR	ENSG00000196233.14	ENST00000676067.1:ENST00000676257.1:ENST00000676187.1:ENST00000675151.1:ENST00000675687.1:ENST00000675251.1:ENST00000676123.1:ENST00000371103.8:ENST00000675471.1:ENST00000421806.4:ENST00000675902.1:ENST00000540664.6:ENST00000676414.1:ENST00000675537.1:ENST00000675117.1:ENST00000675125.1:ENST00000356016.7:ENST00000371097.8:ENST00000676381.1:ENST00000674796.1:ENST00000674725.1:ENST00000675971.1:ENST00000676373.1:ENST00000493486.1:ENST00000469510.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	37	2	4.5461	4.628135	4.71017	0.0365918	0.0114708	0.138959	0.0956037
chr12	112091858	112091957	5415257	0	-	0.262626	[0,0.28]	chr12	517242	6	INTRON	INTRON	NAA25	ENSG00000111300.10	ENST00000261745.9:ENST00000552527.5:ENST00000549711.5:ENST00000551858.1:ENST00000547133.1:ENST00000548627.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	37	2	4.5461	4.628135	4.71017	0.0365918	0.0114708	0.138959	0.0956037
chr3	32741868	32741968	1393695	0	+	0.19	[0,0.28]	chr3	145926	40	INTRON	INTRON	CNOT10	ENSG00000182973.20	ENST00000331889.10:ENST00000328834.10:ENST00000435630.5:ENST00000454516.7:ENST00000416457.5:ENST00000430408.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	37	2	4.5461	4.628135	4.71017	0.0365918	0.0114708	0.138959	0.0956037
chr4	75791994	75792093	1975199	0	+	0.252525	[0,0.28]	chr4	197998	8	INTRON	INTRON	USO1	ENSG00000138768.15	ENST00000514213.7:ENST00000264904.8	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	4.5461	4.628135	4.71017	0.0365918	0.0114708	0.138959	0.0956037
chr4	159244890	159244990	2074927	0	+	0.24	[0,0.28]	chr4	205218	7	INTRON	INTRON	RAPGEF2	ENSG00000109756.10	ENST00000644474.1:ENST00000691494.1:ENST00000505478.5:ENST00000504604.5:ENST00000644902.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	37	2	4.5461	4.628135	4.71017	0.0365918	0.0114708	0.138959	0.0956037
chr1	54719890	54719986	108233	0	+	0.354167	(0.35,0.378]	chr1	14114	19	INTRON	INTRON	TTC4	ENSG00000243725.7	ENST00000371281.4:ENST00000371284.9	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	73	2	3.80701	4.6281	5.44919	9.66659e-4	2.34133e-4	0.0282401	0.0135358
chr1	111638358	111638458	185301	0	+	0.26	[0,0.28]	chr1	20514	104	INTRON	INTRON	RAP1A	ENSG00000116473.15	ENST00000356415.5:ENST00000687939.1:ENST00000369709.4:ENST00000494982.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	37	2	4.62084	4.628035000000001	4.63523	0.0313633	0.0139836	0.13151	0.10247
chr10	63194454	63194534	4632656	0	-	0.25	[0,0.28]	chr10	426159	2	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	JMJD1C	ENSG00000171988.20	ENST00000399262.7:ENST00000402544.5:ENST00000542921.5:ENST00000327520.7:ENST00000483298.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	37	2	4.62084	4.628035000000001	4.63523	0.0313633	0.0139836	0.13151	0.10247
chr12	32737712	32737764	5110356	0	+	0.269231	[0,0.28]	chr12	482534	2	SS3_PROX	SS3_PROX:INTRON	DNM1L	ENSG00000087470.19	ENST00000414834.6:ENST00000452533.6:ENST00000358214.9:ENST00000553257.6:ENST00000549701.6:ENST00000266481.10:ENST00000546649.5:ENST00000547312.5:ENST00000381000.8:ENST00000546757.5:ENST00000550093.5:ENST00000547078.5:ENST00000552743.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	37	2	4.62084	4.628035000000001	4.63523	0.0313633	0.0139836	0.13151	0.10247
chr16	21970927	21971024	6319725	0	+	0.257732	[0,0.28]	chr16	604998	19	INTRON	INTRON	UQCRC2	ENSG00000140740.11	ENST00000268379.9:ENST00000561553.5:ENST00000563898.5:ENST00000563711.5:ENST00000567810.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	37	2	4.62084	4.628035000000001	4.63523	0.0313633	0.0139836	0.13151	0.10247
chr2	23793941	23794041	1079595	0	-	0.26	[0,0.28]	chr2	115224	49	INTRON	INTRON	ATAD2B	ENSG00000119778.15	ENST00000238789.10:ENST00000381024.4:ENST00000474583.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	37	2	4.62084	4.628035000000001	4.63523	0.0313633	0.0139836	0.13151	0.10247
chr2	202298879	202298974	985262	0	+	0.231579	[0,0.28]	chr2	105780	6	INTRON	INTRON	NOP58	ENSG00000055044.11	ENST00000264279.10	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	4.62084	4.628035000000001	4.63523	0.0313633	0.0139836	0.13151	0.10247
chr6	52278341	52278441	3105847	0	-	0.26	[0,0.28]	chr6	290804	2	SS5_PROX	SS5_PROX:INTRON	MCM3	ENSG00000112118.20	ENST00000616552.4:ENST00000229854.12:ENST00000596288.7:ENST00000419835.8:ENST00000476448.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	37	2	4.62084	4.628035000000001	4.63523	0.0313633	0.0139836	0.13151	0.10247
chr6	109102962	109103061	2935468	0	+	0.262626	[0,0.28]	chr6	276349	23	INTRON	INTRON	CEP57L1	ENSG00000183137.15	ENST00000521277.5:ENST00000521737.5:ENST00000407272.5:ENST00000519286.5:ENST00000518329.5:ENST00000522461.5:ENST00000518853.5:ENST00000521522.5:ENST00000524064.5:ENST00000522608.5:ENST00000517392.6:ENST00000519407.5:ENST00000521503.5:ENST00000519095.5:ENST00000520610.5:ENST00000368968.6:ENST00000522490.5:ENST00000523209.5:ENST00000368970.6:ENST00000520883.5:ENST00000520761.1:ENST00000523787.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	37	2	4.62084	4.628035000000001	4.63523	0.0313633	0.0139836	0.13151	0.10247
chr7	497910	498003	3457590	0	-	0.172043	[0,0.28]	chr7	323343	8	UTR3	UTR3:EXON_MRNA	PDGFA	ENSG00000197461.13	ENST00000402802.7	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	4.62084	4.628035000000001	4.63523	0.0313633	0.0139836	0.13151	0.10247
chr1	247166156	247166256	683816	0	-	0.36	(0.35,0.378]	chr1	80174	59	INTRON	INTRON	ZNF124	ENSG00000196418.13	ENST00000472531.5:ENST00000491356.5:ENST00000543802.3:ENST00000340684.10:ENST00000491848.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	73	2	3.45621	4.62784	5.79947	0.0011842	2.36402e-4	0.031662	0.0140941
chr3	47655713	47655813	1683787	0	-	0.25	[0,0.28]	chr3	171996	166	INTRON	INTRON	SMARCC1	ENSG00000173473.11	ENST00000254480.10:ENST00000425518.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	95	2	3.50032	4.627635	5.75495	0.00245166	3.2999e-4	0.0446188	0.0161352
chr1	30990994	30991093	412142	0	-	0.222222	[0,0.28]	chr1	49701	90	INTRON	INTRON	PUM1	ENSG00000134644.16	ENST00000426105.7:ENST00000373747.7:ENST00000257075.9:ENST00000424085.6:ENST00000525843.5:ENST00000440538.6:ENST00000498419.5:ENST00000373741.8:ENST00000373742.6:ENST00000532678.1:ENST00000526215.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	140	2	3.01587	4.62752	6.23917	3.5739e-4	2.51349e-4	0.0169202	0.0146599
chr18	73253999	73254099	6988515	0	-	0.25	[0,0.28]	chr18	691712	10	INTRON	INTRON	LINC02864	ENSG00000263711.6	ENST00000584544.5:ENST00000581011.5:ENST00000581862.6:ENST00000669547.1:ENST00000661525.1:ENST00000583405.5:ENST00000582571.2:ENST00000667943.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	7	212	2	2.51894	4.627495	6.73605	3.76495e-4	3.16268e-5	0.0175593	0.0047002
chr9	100311178	100311278	4308747	0	-	0.45	(0.44,0.476]	chr9	395838	4	INTRON	INTRON	TEX10	ENSG00000136891.14	ENST00000535814.5:ENST00000374902.9	protein_coding	protein_coding	protein_coding	protein_coding	1	69	2	3.67739	4.62697	5.57655	3.8961e-4	3.3967e-4	0.0177751	0.0170719
chr2	191683376	191683464	960417	0	+	0.386364	(0.378,0.408]	chr2	104292	2	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	NABP1	ENSG00000173559.15	ENST00000307834.9:ENST00000674262.1:ENST00000674360.1:ENST00000674406.1:ENST00000674414.1:ENST00000410026.7:ENST00000674172.1:ENST00000674187.1:ENST00000307849.7:ENST00000425611.9:ENST00000451500.5:ENST00000409510.5:ENST00000435931.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	77	2	3.67609	4.626955	5.57782	6.32264e-4	1.18586e-4	0.0231174	0.00930884
chr3	185742611	185742711	1885524	0	-	0.38	(0.378,0.408]	chr3	188573	439	INTRON	INTRON	IGF2BP2	ENSG00000073792.16	ENST00000382199.7:ENST00000346192.7:ENST00000457616.6:ENST00000421047.3:ENST00000461957.5:ENST00000493302.5:ENST00000466476.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	76	2	3.35998	4.626835	5.89369	0.00230615	2.33849e-5	0.0428247	0.00378116
chr17	31187153	31187253	6592066	0	+	0.46	(0.44,0.476]	chr17	641101	38	INTRON	INTRON	NF1	ENSG00000196712.20	ENST00000696138.1:ENST00000356175.7:ENST00000487476.5:ENST00000691014.1:ENST00000358273.9:ENST00000431387.8:ENST00000579081.5:ENST00000495910.6:ENST00000686189.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	35	2	4.12843	4.62678	5.12513	0.0337192	7.96486e-4	0.134145	0.0258804
chr4	39846277	39846376	2130850	0	-	0.515152	(0.476,0.515]	chr4	210084	5	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	PDS5A	ENSG00000121892.15	ENST00000303538.13:ENST00000507766.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	36	2	4.10113	4.62628	5.15143	0.0226984	0.00166579	0.124921	0.0369207
chr14	31004457	31004557	5857654	0	-	0.45	(0.44,0.476]	chr14	556508	401	INTRON	INTRON	STRN3	ENSG00000196792.12	ENST00000355683.9:ENST00000357479.10:ENST00000555358.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	36	2	4.01038	4.626245	5.24211	0.0433743	4.87398e-4	0.148082	0.0199652
chr6	42216809	42216907	3095440	0	-	0.44898	(0.44,0.476]	chr6	289565	21	INTRON	INTRON	MRPS10	ENSG00000048544.6	ENST00000053468.4	protein_coding	protein_coding	protein_coding	protein_coding	1	69	2	3.59417	4.62575	5.65733	5.78231e-4	2.3957e-4	0.0218253	0.0142132
chr19	19336287	19336382	7034894	0	+	0.578947	(0.57,1]	chr19	701342	1	SS5_PROX	SS5_PROX:INTRON	MAU2	ENSG00000129933.21	ENST00000262815.13:ENST00000609122.5:ENST00000586189.7:ENST00000592069.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	74	2	3.18398	4.6256450000000005	6.06731	3.84422e-5	1.59372e-7	0.00528498	1.84145e-4
chr1	77799731	77799831	147751	0	+	0.35	(0.32,0.35]	chr1	16483	160	INTRON	INTRON	MIGA1	ENSG00000180488.16	ENST00000443751.3:ENST00000643390.1:ENST00000643143.1:ENST00000645756.1:ENST00000642959.1:ENST00000370791.8:ENST00000646892.1:ENST00000645526.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	35	2	4.45629	4.625555	4.79482	0.0246089	0.00447781	0.12011	0.0610799
chr3	197135643	197135742	1901863	0	-	0.323232	(0.32,0.35]	chr3	190584	46	INTRON	INTRON	DLG1	ENSG00000075711.21	ENST00000667157.1:ENST00000346964.6:ENST00000656428.1:ENST00000663148.1:ENST00000655488.1:ENST00000357674.9:ENST00000671185.1:ENST00000658701.1:ENST00000667104.1:ENST00000661336.1:ENST00000669565.1:ENST00000670455.1:ENST00000656087.1:ENST00000670366.1:ENST00000653583.1:ENST00000653795.1:ENST00000671246.1:ENST00000661453.1:ENST00000665728.1:ENST00000664564.1:ENST00000653331.1:ENST00000660432.1:ENST00000660898.1:ENST00000657381.1:ENST00000659221.1:ENST00000654737.1:ENST00000669332.1:ENST00000659716.1:ENST00000660553.1:ENST00000664991.1:ENST00000419354.5:ENST00000661440.1:ENST00000667971.1:ENST00000670935.1:ENST00000668578.1:ENST00000666007.1:ENST00000661229.1:ENST00000660237.1:ENST00000657098.1:ENST00000661013.1:ENST00000436682.6:ENST00000452595.5:ENST00000662727.1:ENST00000422288.6:ENST00000448528.6:ENST00000443183.5:ENST00000656944.1:ENST00000392382.6:ENST00000450955.5:ENST00000658155.1:ENST00000669714.1:ENST00000654733.1:ENST00000469073.2:ENST00000419227.5:ENST00000392381.7:ENST00000471733.5:ENST00000419553.6:ENST00000447466.1:ENST00000661808.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	35	2	4.45629	4.625555	4.79482	0.0246089	0.00447781	0.12011	0.0610799
chr5	173136118	173136217	2549498	0	+	0.343434	(0.32,0.35]	chr5	243364	25	UTR3	UTR3:EXON_MRNA	CREBRF	ENSG00000164463.12	ENST00000296953.6	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.45629	4.625555	4.79482	0.0246089	0.00447781	0.12011	0.0610799
chr22	26539705	26539802	7564557	0	-	0.463918	(0.44,0.476]	chr22	774014	29	INTRON	INTRON	TPST2	ENSG00000128294.16	ENST00000338754.9:ENST00000403880.5:ENST00000398110.6:ENST00000445720.1	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.22393	4.62548	5.02703	0.0162322	0.00278015	0.109464	0.0469265
chr5	146273966	146274065	2514838	0	+	0.454545	(0.44,0.476]	chr5	240255	19	INTRON	INTRON	ENSG00000275740:RBM27	ENSG00000275740.1:ENSG00000091009.8	ENST00000506502.2:ENST00000265271.7	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.22393	4.62548	5.02703	0.0162322	0.00278015	0.109464	0.0469265
chr22	19094081	19094181	7551731	0	-	0.47	(0.44,0.476]	chr22	771903	42	INTRON	INTRON	DGCR2	ENSG00000070413.20	ENST00000537045.5:ENST00000545799.5:ENST00000263196.12:ENST00000389262.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	92	2	3.15639	4.62545	6.09451	3.93757e-4	3.01924e-5	0.0178567	0.00456171
chr8	89746734	89746834	3985172	0	-	0.35	(0.32,0.35]	chr8	364998	207	INTRON	INTRON	RIPK2-DT	ENSG00000251136.10	ENST00000688654.1:ENST00000690564.1:ENST00000661105.1:ENST00000685145.1:ENST00000519655.6:ENST00000656898.2:ENST00000685787.1:ENST00000693018.1:ENST00000691313.1:ENST00000691446.1:ENST00000524190.2:ENST00000691897.1:ENST00000685988.1:ENST00000691595.1:ENST00000688855.1:ENST00000504145.6:ENST00000685619.1:ENST00000653574.1:ENST00000687824.1:ENST00000521996.2:ENST00000692782.1:ENST00000655144.2:ENST00000687204.1:ENST00000689241.1:ENST00000686009.1:ENST00000685448.1	lncRNA	lncRNA	lncRNA	lncRNA	1	83	2	3.12146	4.625445	6.12943	0.00630799	1.4081e-5	0.0687526	0.00279379
chr10	110090159	110090259	4519218	0	+	0.34	(0.32,0.35]	chr10	416781	105	INTRON	INTRON	ADD3	ENSG00000148700.15	ENST00000468251.5:ENST00000360162.7:ENST00000277900.12:ENST00000356080.9:ENST00000484622.5:ENST00000487085.5:ENST00000459738.5:ENST00000497125.5:ENST00000495661.5:ENST00000475954.5:ENST00000496517.5:ENST00000468345.1:ENST00000473669.5:ENST00000486014.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	35	2	4.55661	4.625205	4.6938	0.0137794	0.00927858	0.0949306	0.0855292
chr12	104499104	104499204	5211105	0	+	0.35	(0.32,0.35]	chr12	493315	412	INTRON	INTRON	CHST11	ENSG00000171310.11	ENST00000303694.6:ENST00000547956.1:ENST00000549260.5:ENST00000546689.1	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.55661	4.625205	4.6938	0.0137794	0.00927858	0.0949306	0.0855292
chr2	15189167	15189266	1069392	0	-	0.343434	(0.32,0.35]	chr2	114196	19	INTRON	INTRON	NBAS	ENSG00000151779.13	ENST00000417461.5:ENST00000281513.10:ENST00000442506.5:ENST00000433283.5:ENST00000423602.1	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.55661	4.625205	4.6938	0.0137794	0.00927858	0.0949306	0.0855292
chr21	43886206	43886305	7414000	0	+	0.333333	(0.32,0.35]	chr21	755692	32	INTRON	INTRON	AGPAT3	ENSG00000160216.21	ENST00000291572.13:ENST00000448287.5:ENST00000398061.5	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.55661	4.625205	4.6938	0.0137794	0.00927858	0.0949306	0.0855292
chr21	46261711	46261811	7471175	0	-	0.33	(0.32,0.35]	chr21	761642	3	SS3_PROX	SS3_PROX:INTRON	MCM3AP	ENSG00000160294.11	ENST00000397708.1:ENST00000291688.6:ENST00000486937.5:ENST00000496607.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	35	2	4.55661	4.625205	4.6938	0.0137794	0.00927858	0.0949306	0.0855292
chr5	138354086	138354186	2494865	0	+	0.35	(0.32,0.35]	chr5	238471	7	INTRON	INTRON	KDM3B	ENSG00000120733.14	ENST00000314358.10	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.55661	4.625205	4.6938	0.0137794	0.00927858	0.0949306	0.0855292
chr10	74053917	74054016	4455061	0	+	0.151515	[0,0.28]	chr10	411397	104	INTRON	INTRON	VCL	ENSG00000035403.18	ENST00000623461.3:ENST00000372755.7:ENST00000624354.3:ENST00000211998.10:ENST00000478896.2:ENST00000461383.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	37	2	4.46726	4.62434	4.78142	0.0427997	0.00943974	0.148082	0.0861183
chr10	124398602	124398698	4710620	0	-	0.260417	[0,0.28]	chr10	434682	1	INTRON	INTRON	OAT	ENSG00000065154.12	ENST00000539214.5:ENST00000368845.6:ENST00000471127.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	37	2	4.46726	4.62434	4.78142	0.0427997	0.00943974	0.148082	0.0861183
chr11	67192358	67192458	4813184	0	+	0.24	[0,0.28]	chr11	448134	101	INTRON	INTRON	KDM2A	ENSG00000173120.15	ENST00000529006.7:ENST00000398645.6:ENST00000308783.9	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	4.46726	4.62434	4.78142	0.0427997	0.00943974	0.148082	0.0861183
chr15	20481417	20481516	6118695	0	-	0.222222	[0,0.28]	chr15	582475	40	INTRON	INTRON	HERC2P3	ENSG00000180229.12	ENST00000428453.5:ENST00000437318.5:ENST00000430598.5:ENST00000429257.5:ENST00000414804.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	37	2	4.46726	4.62434	4.78142	0.0427997	0.00943974	0.148082	0.0861183
chr6	43003651	43003750	2868153	0	+	0.272727	[0,0.28]	chr6	271466	136	INTRON	INTRON	PPP2R5D	ENSG00000112640.16	ENST00000394110.7:ENST00000472118.5:ENST00000485511.6:ENST00000230402.10:ENST00000461010.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	37	2	4.46726	4.62434	4.78142	0.0427997	0.00943974	0.148082	0.0861183
chr8	38371160	38371260	3937315	0	-	0.18	[0,0.28]	chr8	360833	69	INTRON	INTRON	NSD3	ENSG00000147548.17	ENST00000317025.13:ENST00000433384.6:ENST00000527502.5:ENST00000316985.7:ENST00000529223.1:ENST00000534155.1:ENST00000534539.1	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	4.46726	4.62434	4.78142	0.0427997	0.00943974	0.148082	0.0861183
chr13	112759649	112759749	5546948	0	+	0.27	[0,0.28]	chr13	529925	421	INTRON	INTRON	ATP11A	ENSG00000068650.19	ENST00000375645.8:ENST00000375630.6:ENST00000487903.5:ENST00000466946.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	37	2	4.55618	4.624045000000001	4.69191	0.0269474	0.0171034	0.123442	0.110899
chr5	54280994	54281094	2620622	0	-	0.17	[0,0.28]	chr5	248860	1087	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2:ENST00000505630.5:ENST00000505383.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	37	2	4.55618	4.624045000000001	4.69191	0.0269474	0.0171034	0.123442	0.110899
chr6	89790999	89791097	3161746	0	-	0.27551	[0,0.28]	chr6	294866	2	INTRON	INTRON	MDN1	ENSG00000112159.12	ENST00000369393.8:ENST00000629399.2:ENST00000439638.1	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	4.55618	4.624045000000001	4.69191	0.0269474	0.0171034	0.123442	0.110899
chr6	136786614	136786714	3235583	0	-	0.25	[0,0.28]	chr6	300700	657	INTRON	INTRON	MAP3K5	ENSG00000197442.10	ENST00000359015.5	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	4.55618	4.624045000000001	4.69191	0.0269474	0.0171034	0.123442	0.110899
chr1	16310990	16311090	382203	0	-	0.42	(0.408,0.44]	chr1	44880	47	INTRON	INTRON	FBXO42	ENSG00000037637.11	ENST00000375592.8:ENST00000478089.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	35	2	4.12187	4.623775	5.12568	0.0354689	7.90919e-4	0.137535	0.0258324
chr18	12644020	12644120	6949153	0	-	0.44	(0.408,0.44]	chr18	687396	78	INTRON	INTRON	SPIRE1	ENSG00000134278.16	ENST00000409402.9:ENST00000410092.7:ENST00000309836.9:ENST00000453447.6:ENST00000449797.5:ENST00000497844.6:ENST00000462226.1	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.12187	4.623775	5.12568	0.0354689	7.90919e-4	0.137535	0.0258324
chr7	152172438	152172537	3678600	0	-	0.50505	(0.476,0.515]	chr7	341450	7	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000360104.8:ENST00000262189.11:ENST00000680877.1:ENST00000679560.1:ENST00000683120.1:ENST00000679393.1:ENST00000683200.1:ENST00000684261.1:ENST00000682283.1:ENST00000473186.5:ENST00000679882.1:ENST00000683397.1:ENST00000684307.1:ENST00000683625.1:ENST00000684398.1:ENST00000683670.1:ENST00000680969.1:ENST00000681033.1:ENST00000682176.1:ENST00000683159.1:ENST00000558665.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	69	2	3.58243	4.62374	5.66505	6.18479e-4	2.08835e-4	0.0223951	0.0131276
chr1	154248345	154248443	227813	0	+	0.408163	(0.378,0.408]	chr1	26287	16	INTRON	INTRON	UBAP2L	ENSG00000143569.19	ENST00000343815.10:ENST00000271877.11:ENST00000613315.4:ENST00000428931.6:ENST00000361546.6:ENST00000466173.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	71	2	3.86951	4.62345	5.37739	0.0010014	1.55755e-4	0.0288906	0.0106835
chr12	56667348	56667445	5335865	0	-	0.278351	[0,0.28]	chr12	510168	7	INTRON	INTRON	PTGES3	ENSG00000110958.16	ENST00000537473.2:ENST00000614328.4:ENST00000262033.11:ENST00000414274.7:ENST00000436399.6:ENST00000448157.6:ENST00000456859.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	85	2	3.51361	4.623184999999999	5.73276	0.00156565	0.00142208	0.0360583	0.0346633
chr3	172783298	172783398	1563555	0	+	0.25	[0,0.28]	chr3	161790	1	SS3_PROX	SS3_PROX:INTRON	ECT2	ENSG00000114346.14	ENST00000232458.9:ENST00000540509.5:ENST00000392692.8:ENST00000417960.5:ENST00000441497.6:ENST00000444250.1	protein_coding	protein_coding	protein_coding	protein_coding	2	121	2	3.54731	4.622985	5.69866	0.00175225	1.08476e-4	0.0376491	0.00880907
chr2	165912113	165912213	1253532	0	-	0.3	(0.28,0.32]	chr2	132859	2	SS5_PROX	SS5_PROX:INTRON	TTC21B	ENSG00000123607.16	ENST00000680888.1:ENST00000680947.1:ENST00000681083.1:ENST00000681024.1:ENST00000680690.1:ENST00000679676.1:ENST00000679967.1:ENST00000679356.1:ENST00000680327.1:ENST00000681502.1:ENST00000681167.1:ENST00000681483.1:ENST00000680657.1:ENST00000679931.1:ENST00000681952.1:ENST00000652557.1:ENST00000679799.1:ENST00000681819.1:ENST00000243344.8:ENST00000679840.1:ENST00000680448.1:ENST00000681606.1:ENST00000679671.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	80	2	3.80982	4.6227599999999995	5.4357	0.00215368	3.09593e-4	0.0417866	0.0157609
chr15	87690374	87690474	6256458	0	-	0.26	[0,0.28]	chr15	596826	1470	INTRON	INTRON	ENSG00000259560	ENSG00000259560.2	ENST00000665121.1:ENST00000560439.1	lncRNA	lncRNA	lncRNA	lncRNA	0	39	2	4.1879	4.62269	5.05748	0.0396579	0.0113653	0.161534	0.0886611
chr10	74105853	74105950	4455601	0	+	0.43299	(0.408,0.44]	chr10	411485	1	INTRON	INTRON	VCL	ENSG00000035403.18	ENST00000623461.3:ENST00000372755.7:ENST00000624354.3:ENST00000211998.10:ENST00000472585.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	74	2	3.41144	4.62254	5.83364	0.00178336	2.74563e-5	0.0379201	0.00414215
chr4	152508595	152508695	2274815	0	-	0.41	(0.408,0.44]	chr4	221124	188	INTRON	INTRON	FBXW7	ENSG00000109670.16	ENST00000281708.10:ENST00000603548.6:ENST00000604872.6:ENST00000647166.1:ENST00000643834.1:ENST00000642901.1	protein_coding	protein_coding	protein_coding	protein_coding	1	74	2	3.48793	4.62249	5.75705	0.00130904	4.13252e-5	0.0331539	0.00519938
chr3	196245787	196245885	1897887	0	-	0.571429	(0.57,1]	chr3	190028	28	INTRON	INTRON	PCYT1A	ENSG00000161217.12	ENST00000441879.5:ENST00000419333.5:ENST00000431016.6:ENST00000292823.6:ENST00000411591.5:ENST00000433733.5:ENST00000430755.5:ENST00000473978.5:ENST00000488235.1:ENST00000460677.5:ENST00000444822.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	26	2	4.37136	4.622345	4.87333	0.00345135	3.21412e-4	0.0517761	0.0159645
chr16	85417824	85417924	6414008	0	+	0.54	(0.515,0.57]	chr16	615465	585	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	2	90	2	3.41978	4.62195	5.82412	1.03805e-4	1.29371e-5	0.00915599	0.00266147
chr11	768941	769039	4889643	0	-	0.55102	(0.515,0.57]	chr11	457802	17	UTR3	UTR3:EXON_MRNA:INTRON	GATD1	ENSG00000177225.17	ENST00000465313.6:ENST00000319863.13:ENST00000397472.6:ENST00000528309.5:ENST00000354286.8:ENST00000526325.5:ENST00000526650.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	89	2	2.78208	4.621895	6.46171	0.00209264	9.28395e-7	0.0424943	5.99691e-4
chr22	41512287	41512377	7523982	0	+	0.411111	(0.408,0.44]	chr22	768983	1	SS5_PROX	SS5_PROX:INTRON	ACO2	ENSG00000100412.17	ENST00000676748.1:ENST00000677554.1:ENST00000679320.1:ENST00000678600.1:ENST00000678394.1:ENST00000676792.1:ENST00000678688.1:ENST00000677516.1:ENST00000678788.1:ENST00000677007.1:ENST00000676959.1:ENST00000679311.1:ENST00000216254.9:ENST00000676714.1:ENST00000466237.2:ENST00000677427.1:ENST00000678454.1:ENST00000677153.1:ENST00000678819.1:ENST00000396512.3:ENST00000678269.1:ENST00000677532.1:ENST00000679264.1:ENST00000677698.1:ENST00000676822.1:ENST00000676664.1:ENST00000478010.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	36	2	4.10594	4.62148	5.13702	0.0219367	0.00202889	0.123836	0.04086
chrX	110058706	110058806	7700594	0	+	0.43	(0.408,0.44]	chrX	788130	542	INTRON	INTRON	TMEM164	ENSG00000157600.12	ENST00000372072.7:ENST00000471255.5:ENST00000372073.5:ENST00000372068.7:ENST00000288381.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	36	2	4.10594	4.62148	5.13702	0.0219367	0.00202889	0.123836	0.04086
chr15	82500886	82500986	6247258	0	-	0.43	(0.408,0.44]	chr15	596152	226	INTRON	INTRON	GOLGA2P10	ENSG00000255769.7	ENST00000618004.4:ENST00000614347.4:ENST00000618267.4:ENST00000612379.4:ENST00000619738.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	1	74	2	3.52471	4.62094	5.71717	0.00112428	5.09043e-5	0.0306963	0.00585477
chr4	121822992	121823069	2233625	0	-	0.415584	(0.408,0.44]	chr4	218797	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CCNA2	ENSG00000145386.11	ENST00000274026.10	protein_coding	protein_coding	protein_coding	protein_coding	1	69	2	3.55215	4.620705	5.68926	7.01039e-4	2.2853e-4	0.0241881	0.0138641
chr12	96349648	96349748	5394777	0	-	0.34	(0.32,0.35]	chr12	514463	144	INTRON	INTRON	CDK17	ENSG00000059758.8	ENST00000261211.8:ENST00000543119.6:ENST00000542666.5:ENST00000551816.5:ENST00000552496.5:ENST00000552262.1	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	4.06299	4.620604999999999	5.17822	0.0559439	0.00115625	0.165463	0.0313436
chr8	97839122	97839222	3810578	0	+	0.33	(0.32,0.35]	chr8	352938	136	INTRON	INTRON	LAPTM4B	ENSG00000104341.17	ENST00000445593.6:ENST00000619747.1:ENST00000521545.7	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	4.06299	4.620604999999999	5.17822	0.0559439	0.00115625	0.165463	0.0313436
chr10	42813901	42814001	4428346	0	+	0.34	(0.32,0.35]	chr10	408133	113	INTRON	INTRON	BMS1	ENSG00000165733.8	ENST00000374518.6	protein_coding	protein_coding	protein_coding	protein_coding	1	75	2	3.53854	4.62047	5.7024	9.09596e-4	5.25722e-4	0.0277043	0.0210958
chr4	3529305	3529404	2100500	0	-	0.444444	(0.44,0.476]	chr4	207968	38	INTRON	INTRON	LRPAP1	ENSG00000163956.13	ENST00000650182.1:ENST00000296325.9:ENST00000648517.1:ENST00000515119.5:ENST00000509198.1:ENST00000650633.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	93	2	2.981	4.619925	6.25885	9.31193e-4	1.28061e-5	0.0278746	0.00283726
chr7	105119317	105119416	3601182	0	-	0.40404	(0.378,0.408]	chr7	336054	9	INTRON	INTRON	SRPK2	ENSG00000135250.17	ENST00000465072.5:ENST00000393651.8:ENST00000357311.7:ENST00000466917.1:ENST00000485455.1:ENST00000477925.5:ENST00000489828.5:ENST00000474770.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	73	2	4.06352	4.619895	5.17627	0.00208234	5.51462e-5	0.0411801	0.00608953
chr1	24819714	24819814	46809	0	+	0.5	(0.476,0.515]	chr1	5782	51	INTRON	INTRON	CLIC4	ENSG00000169504.15	ENST00000488683.1:ENST00000497755.1:ENST00000374379.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	34	2	4.24501	4.6192150000000005	4.99342	0.0247713	0.00139274	0.12011	0.0341261
chr12	101820858	101820958	5398883	0	-	0.51	(0.476,0.515]	chr12	514990	98	INTRON	INTRON	GNPTAB	ENSG00000111670.16	ENST00000299314.12:ENST00000549940.5:ENST00000647144.1:ENST00000392919.4:ENST00000549165.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	34	2	4.24501	4.6192150000000005	4.99342	0.0247713	0.00139274	0.12011	0.0341261
chr16	67788956	67789055	6505507	0	-	0.50505	(0.476,0.515]	chr16	629654	165	INTRON	INTRON	RANBP10	ENSG00000141084.12	ENST00000317506.8:ENST00000448631.6:ENST00000602506.5:ENST00000602677.5:ENST00000602525.5:ENST00000602638.5:ENST00000602815.5:ENST00000602887.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	34	2	4.24501	4.6192150000000005	4.99342	0.0247713	0.00139274	0.12011	0.0341261
chr3	197060298	197060398	1901082	0	-	0.5	(0.476,0.515]	chr3	190484	3	SS3_PROX	SS3_PROX:INTRON	DLG1	ENSG00000075711.21	ENST00000667157.1:ENST00000346964.6:ENST00000656428.1:ENST00000663148.1:ENST00000655488.1:ENST00000357674.9:ENST00000671185.1:ENST00000658701.1:ENST00000667104.1:ENST00000661336.1:ENST00000669565.1:ENST00000670455.1:ENST00000656087.1:ENST00000670366.1:ENST00000653583.1:ENST00000653795.1:ENST00000671246.1:ENST00000661453.1:ENST00000665728.1:ENST00000664564.1:ENST00000653331.1:ENST00000660432.1:ENST00000660898.1:ENST00000657381.1:ENST00000659221.1:ENST00000654737.1:ENST00000469371.5:ENST00000669332.1:ENST00000659716.1:ENST00000660553.1:ENST00000664991.1:ENST00000419354.5:ENST00000661440.1:ENST00000667971.1:ENST00000670935.1:ENST00000668578.1:ENST00000666007.1:ENST00000661229.1:ENST00000660237.1:ENST00000657098.1:ENST00000661013.1:ENST00000436682.6:ENST00000452595.5:ENST00000662727.1:ENST00000422288.6:ENST00000448528.6:ENST00000443183.5:ENST00000656944.1:ENST00000392382.6:ENST00000450955.5:ENST00000658155.1:ENST00000669714.1:ENST00000654733.1:ENST00000475394.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	34	2	4.24501	4.6192150000000005	4.99342	0.0247713	0.00139274	0.12011	0.0341261
chr5	119454617	119454717	2462941	0	+	0.5	(0.476,0.515]	chr5	235885	14	INTRON	INTRON	HSD17B4	ENSG00000133835.18	ENST00000683936.1:ENST00000511186.5:ENST00000509514.6:ENST00000682996.1:ENST00000684214.1:ENST00000683974.1:ENST00000414835.7:ENST00000442060.7:ENST00000510025.7:ENST00000515320.5:ENST00000646590.1:ENST00000646058.1:ENST00000682445.1:ENST00000515235.6:ENST00000518349.6:ENST00000683371.1:ENST00000683390.1:ENST00000512841.6:ENST00000645832.1:ENST00000644146.1:ENST00000519184.5:ENST00000646355.1:ENST00000647335.1:ENST00000682531.1:ENST00000683265.1:ENST00000646554.1:ENST00000684160.1:ENST00000682626.1:ENST00000647342.1:ENST00000643250.1:ENST00000508750.1:ENST00000503168.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	34	2	4.24501	4.6192150000000005	4.99342	0.0247713	0.00139274	0.12011	0.0341261
chr11	3017482	3017575	4892179	0	-	0.569892	(0.515,0.57]	chr11	458429	3	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CARS1	ENSG00000110619.18	ENST00000397111.9:ENST00000531387.5:ENST00000380525.9:ENST00000278224.13:ENST00000529772.5:ENST00000526890.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	32	2	4.31326	4.618995	4.92473	0.0141817	0.00108255	0.0959618	0.0300133
chr2	188287616	188287691	1295399	0	-	0.52	(0.515,0.57]	chr2	135676	3	EXON_LNCRNA	EXON_LNCRNA:INTRON	LINC01090	ENSG00000231689.3	ENST00000434418.2:ENST00000632331.1:ENST00000415357.1	lncRNA	lncRNA	lncRNA	lncRNA	0	32	2	4.31326	4.618995	4.92473	0.0141817	0.00108255	0.0959618	0.0300133
chr20	34419566	34419665	7259683	0	+	0.525253	(0.515,0.57]	chr20	737453	9	EXON_LNCRNA	EXON_LNCRNA:INTRON	ITCH	ENSG00000078747.16	ENST00000374864.10:ENST00000535650.7:ENST00000670516.1:ENST00000658310.1:ENST00000665484.1:ENST00000664852.1:ENST00000660337.1:ENST00000665428.1:ENST00000262650.10:ENST00000662871.1:ENST00000665346.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	32	2	4.31326	4.618995	4.92473	0.0141817	0.00108255	0.0959618	0.0300133
chr17	46351920	46352020	6785990	0	-	0.51	(0.476,0.515]	chr17	669312	118	INTRON	INTRON	ARL17B	ENSG00000228696.10	ENST00000570618.5:ENST00000656849.1:ENST00000434041.6:ENST00000572991.5:ENST00000622877.4:ENST00000575698.5:ENST00000575960.5:ENST00000571246.5:ENST00000450673.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	39	2	3.83018	4.618935	5.40769	0.0423385	6.23078e-4	0.161744	0.0229151
chr16	53473304	53473403	6353944	0	+	0.292929	(0.28,0.32]	chr16	610029	20	INTRON	INTRON	RBL2	ENSG00000103479.17	ENST00000680543.1:ENST00000262133.11:ENST00000379935.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	36	2	4.33765	4.618634999999999	4.89962	0.039714	0.00425206	0.143072	0.0595557
chr6	169770312	169770412	3036071	0	+	0.32	(0.28,0.32]	chr6	282992	2	INTRON	INTRON	ERMARD	ENSG00000130023.16	ENST00000366773.8:ENST00000366772.6:ENST00000392095.8:ENST00000418781.7:ENST00000588451.1:ENST00000366771.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	36	2	4.33765	4.618634999999999	4.89962	0.039714	0.00425206	0.143072	0.0595557
chr9	112499309	112499409	4185913	0	+	0.31	(0.28,0.32]	chr9	381813	118	INTRON	INTRON	KIAA1958	ENSG00000165185.15	ENST00000337530.11:ENST00000536272.5:ENST00000374244.3	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.33765	4.618634999999999	4.89962	0.039714	0.00425206	0.143072	0.0595557
chr9	124745139	124745239	4348954	0	-	0.3	(0.28,0.32]	chr9	399261	114	INTRON	INTRON	NR6A1	ENSG00000148200.17	ENST00000487099.7:ENST00000373584.7:ENST00000416460.6:ENST00000344523.8	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.33765	4.618634999999999	4.89962	0.039714	0.00425206	0.143072	0.0595557
chr7	74191694	74191794	3332404	0	+	0.33	(0.32,0.35]	chr7	310056	5	PRIMIRNA	PRIMIRNA:INTRON	EIF4H:MIR590	ENSG00000106682.16:ENSG00000207741.1	ENST00000678438.1:ENST00000677998.1:ENST00000495187.2:ENST00000265753.13:ENST00000353999.6:ENST00000677570.1:ENST00000677681.1:ENST00000678815.1:ENST00000679266.1:ENST00000679287.1:ENST00000678341.1:ENST00000385008.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:primary_miRNA	1	75	2	3.68775	4.618595	5.54944	9.42646e-4	4.66127e-4	0.0280811	0.0195589
chr1	19234808	19234881	387050	0	-	0.424658	(0.408,0.44]	chr1	46200	1	SS5_PROX	SS5_PROX:INTRON	EMC1	ENSG00000127463.16	ENST00000477853.6:ENST00000688219.1:ENST00000690732.1:ENST00000690451.1:ENST00000688667.1:ENST00000685099.1:ENST00000685594.1:ENST00000690823.1:ENST00000692207.1:ENST00000688332.1:ENST00000375199.7:ENST00000375208.7:ENST00000486405.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	74	2	3.33067	4.618525	5.90638	0.0024459	1.84308e-5	0.0445752	0.00328489
chr16	4472432	4472528	6437601	0	-	0.479167	(0.476,0.515]	chr16	619909	6	INTRON	INTRON	NMRAL1	ENSG00000153406.14	ENST00000574733.5:ENST00000283429.11:ENST00000404295.7:ENST00000574425.5:ENST00000571291.5:ENST00000573520.5:ENST00000573571.1:ENST00000575002.5:ENST00000575557.5:ENST00000576935.5:ENST00000575995.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	34	2	4.32915	4.61838	4.90761	0.0124637	0.00386428	0.0973643	0.0542786
chr2	233255107	233255206	1039385	0	+	0.515152	(0.476,0.515]	chr2	110865	28	INTRON	INTRON	ATG16L1	ENSG00000085978.22	ENST00000431917.5:ENST00000347464.9:ENST00000444735.5:ENST00000373525.9:ENST00000392021.7:ENST00000392017.9:ENST00000419681.5:ENST00000479942.5:ENST00000485623.5:ENST00000474148.5:ENST00000417017.5:ENST00000392020.8:ENST00000392018.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	34	2	4.32915	4.61838	4.90761	0.0124637	0.00386428	0.0973643	0.0542786
chr4	78809568	78809668	1981717	0	+	0.49	(0.476,0.515]	chr4	198463	325	INTRON	INTRON	BMP2K	ENSG00000138756.19	ENST00000389010.7:ENST00000502613.3:ENST00000502871.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	34	2	4.32915	4.61838	4.90761	0.0124637	0.00386428	0.0973643	0.0542786
chr5	119159111	119159211	2460668	0	+	0.48	(0.476,0.515]	chr5	235696	40	INTRON	INTRON	DMXL1	ENSG00000172869.15	ENST00000539542.6:ENST00000311085.8	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.32915	4.61838	4.90761	0.0124637	0.00386428	0.0973643	0.0542786
chr10	37840409	37840509	4602427	0	-	0.26	[0,0.28]	chr10	423985	19	INTRON	INTRON	ZNF248	ENSG00000198105.16	ENST00000615949.6:ENST00000485560.5:ENST00000395867.8:ENST00000357328.8:ENST00000611278.4:ENST00000374648.7:ENST00000395873.7:ENST00000395874.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	38	2	4.20106	4.6183700000000005	5.03568	0.0695895	0.00446141	0.184298	0.0610799
chr21	44777817	44777917	7468485	0	-	0.27	[0,0.28]	chr21	761154	4	SS3_PROX	SS3_PROX:INTRON	UBE2G2	ENSG00000184787.19	ENST00000345496.7:ENST00000497630.5:ENST00000477954.5:ENST00000491513.5:ENST00000330942.9:ENST00000478200.1:ENST00000497664.5:ENST00000462569.5:ENST00000490450.5:ENST00000496395.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	38	2	4.20106	4.6183700000000005	5.03568	0.0695895	0.00446141	0.184298	0.0610799
chr10	69136342	69136442	4444672	0	+	0.54	(0.515,0.57]	chr10	410023	29	INTRON	INTRON	VPS26A	ENSG00000122958.15	ENST00000373382.5:ENST00000395098.5:ENST00000489656.5:ENST00000263559.11:ENST00000497564.5:ENST00000490696.5:ENST00000467852.1:ENST00000489794.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	32	2	4.399	4.618320000000001	4.83764	0.00708863	0.00279527	0.0754923	0.0469265
chr16	12156324	12156424	6293128	0	+	0.52	(0.515,0.57]	chr16	602439	207	INTRON	INTRON	SNX29	ENSG00000048471.14	ENST00000566228.6:ENST00000564791.5	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.399	4.618320000000001	4.83764	0.00708863	0.00279527	0.0754923	0.0469265
chr19	16452116	16452216	7149487	0	-	0.52	(0.515,0.57]	chr19	722342	95	INTRON	INTRON	EPS15L1	ENSG00000127527.14	ENST00000602022.5:ENST00000455140.7:ENST00000592031.5:ENST00000248070.10:ENST00000535753.6:ENST00000594975.5:ENST00000597937.5:ENST00000593760.5:ENST00000596037.5:ENST00000597559.5:ENST00000602151.1:ENST00000595845.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	32	2	4.399	4.618320000000001	4.83764	0.00708863	0.00279527	0.0754923	0.0469265
chr22	21679003	21679103	7482582	0	+	0.52	(0.515,0.57]	chr22	763345	35	INTRON	INTRON	PPIL2	ENSG00000100023.20	ENST00000679795.1:ENST00000679540.1:ENST00000679580.1:ENST00000681286.1:ENST00000680061.1:ENST00000681338.1:ENST00000681956.1:ENST00000679827.1:ENST00000679534.1:ENST00000679479.1:ENST00000680393.1:ENST00000680463.1:ENST00000680426.1:ENST00000335025.12:ENST00000498109.2:ENST00000496819.2:ENST00000398831.8:ENST00000681394.1:ENST00000679477.1:ENST00000626352.2:ENST00000417788.5:ENST00000458567.5:ENST00000681791.1:ENST00000679692.1:ENST00000680962.1:ENST00000679857.1:ENST00000679586.1:ENST00000680094.1:ENST00000484439.5:ENST00000680434.1:ENST00000680109.1:ENST00000406385.1:ENST00000680022.1:ENST00000681137.1:ENST00000680860.1:ENST00000680183.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	32	2	4.399	4.618320000000001	4.83764	0.00708863	0.00279527	0.0754923	0.0469265
chr3	14420434	14420533	1369571	0	+	0.383838	(0.378,0.408]	chr3	144318	36	INTRON	INTRON	SLC6A6	ENSG00000131389.18	ENST00000613060.4:ENST00000618278.4:ENST00000610642.4:ENST00000649500.1:ENST00000622186.5:ENST00000621751.4:ENST00000613930.4:ENST00000622176.4:ENST00000615188.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	97	2	2.82967	4.61817	6.40667	0.00189968	9.01514e-6	0.0402736	0.00231371
chr15	64543747	64543847	6044921	0	+	0.29	(0.28,0.32]	chr15	575696	408	INTRON	INTRON	ZNF609	ENSG00000180357.10	ENST00000326648.5:ENST00000558680.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	36	2	4.4334	4.6179749999999995	4.80255	0.0163355	0.0137406	0.109464	0.0949306
chr19	21093930	21094029	7039634	0	+	0.30303	(0.28,0.32]	chr19	701886	23	INTRON	INTRON	ZNF714	ENSG00000160352.16	ENST00000616183.1:ENST00000596053.5:ENST00000618422.1:ENST00000456283.7:ENST00000613286.4:ENST00000425625.5:ENST00000618008.4:ENST00000610902.4:ENST00000620627.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	36	2	4.4334	4.6179749999999995	4.80255	0.0163355	0.0137406	0.109464	0.0949306
chr5	179571909	179572009	2559992	0	+	0.3	(0.28,0.32]	chr5	244735	21	INTRON	INTRON	RUFY1	ENSG00000176783.15	ENST00000319449.9:ENST00000393448.6:ENST00000393438.6:ENST00000437570.6:ENST00000508609.5:ENST00000514238.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	36	2	4.4334	4.6179749999999995	4.80255	0.0163355	0.0137406	0.109464	0.0949306
chr7	92587973	92588072	3570906	0	-	0.313131	(0.28,0.32]	chr7	332764	22	INTRON	INTRON	FAM133B	ENSG00000234545.8	ENST00000445716.6:ENST00000438306.5:ENST00000415397.6:ENST00000481407.5:ENST00000427372.5:ENST00000480397.5:ENST00000456502.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	36	2	4.4334	4.6179749999999995	4.80255	0.0163355	0.0137406	0.109464	0.0949306
chr6	36976798	36976898	3089716	0	-	0.49	(0.476,0.515]	chr6	289045	3	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MTCH1	ENSG00000137409.21	ENST00000695055.1:ENST00000695048.1:ENST00000695049.1:ENST00000695050.1:ENST00000695051.1:ENST00000695052.1:ENST00000695053.1:ENST00000695054.1:ENST00000695046.1:ENST00000695047.1:ENST00000695045.1:ENST00000695044.1:ENST00000695043.1:ENST00000373616.9:ENST00000373627.10:ENST00000695059.1:ENST00000695060.1:ENST00000695058.1:ENST00000695066.1:ENST00000695067.1:ENST00000695068.1:ENST00000695069.1:ENST00000695063.1:ENST00000695064.1:ENST00000695065.1:ENST00000695062.1:ENST00000695072.1:ENST00000695070.1:ENST00000695071.1:ENST00000695073.1:ENST00000695074.1:ENST00000695075.1:ENST00000695076.1:ENST00000418541.6:ENST00000460219.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	111	2	3.19279	4.617915	6.04304	6.57024e-5	3.44951e-5	0.0067007	0.00495154
chr2	159614793	159614893	1252518	0	-	0.36	(0.35,0.378]	chr2	132736	586	INTRON	INTRON	BAZ2B	ENSG00000123636.19	ENST00000392782.5:ENST00000392783.7:ENST00000541068.6:ENST00000437839.5:ENST00000483316.1:ENST00000552327.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	36	2	4.19022	4.61767	5.04512	0.0209891	0.00393262	0.122348	0.0548259
chr21	25591627	25591725	7435498	0	-	0.357143	(0.35,0.378]	chr21	758152	24	INTRON	INTRON	MRPL39	ENSG00000154719.14	ENST00000307301.11:ENST00000352957.9	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.5655	4.617395	4.66929	0.0155464	0.00541617	0.100909	0.066545000000000007
chr6	34309777	34309877	3083944	0	-	0.37	(0.35,0.378]	chr6	288627	137	INTRON	INTRON	NUDT3:RPS10-NUDT3	ENSG00000272325.2:ENSG00000270800.3	ENST00000607016.2:ENST00000639725.1:ENST00000639877.1:ENST00000605528.2	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.5655	4.617395	4.66929	0.0155464	0.00541617	0.100909	0.066545000000000007
chr13	83049817	83049917	5633745	0	-	0.23	[0,0.28]	chr13	536804	2709	INTRON	INTRON	ENSG00000286385	ENSG00000286385.1	ENST00000663739.1	lncRNA	lncRNA	lncRNA	lncRNA	0	38	2	4.28915	4.617380000000001	4.94561	0.0319595	0.0150263	0.14477	0.0994339
chr17	1393133	1393233	6699538	0	-	0.21	[0,0.28]	chr17	655552	230	INTRON	INTRON	YWHAE	ENSG00000108953.17	ENST00000264335.13:ENST00000571732.5:ENST00000573026.1:ENST00000573196.5:ENST00000575977.1:ENST00000469398.5:ENST00000486241.1:ENST00000489287.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	38	2	4.28915	4.617380000000001	4.94561	0.0319595	0.0150263	0.14477	0.0994339
chr2	17755663	17755758	706562	0	+	0.263158	[0,0.28]	chr2	81834	15	EXON_LNCRNA	EXON_LNCRNA:INTRON	GEN1	ENSG00000178295.15	ENST00000317402.11:ENST00000614478.1:ENST00000381254.7:ENST00000524465.5:ENST00000532257.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	38	2	4.28915	4.617380000000001	4.94561	0.0319595	0.0150263	0.14477	0.0994339
chr2	42173235	42173335	758531	0	+	0.24	[0,0.28]	chr2	86121	32	INTRON	INTRON	EML4	ENSG00000143924.19	ENST00000318522.10:ENST00000402711.6:ENST00000409040.1:ENST00000482660.1:ENST00000401738.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	38	2	4.28915	4.617380000000001	4.94561	0.0319595	0.0150263	0.14477	0.0994339
chr2	187552703	187552802	1289509	0	-	0.272727	[0,0.28]	chr2	135627	77	INTRON	INTRON	TFPI	ENSG00000003436.16	ENST00000233156.9:ENST00000409676.5:ENST00000339091.8:ENST00000421427.5:ENST00000437725.5:ENST00000453013.5:ENST00000417013.5:ENST00000420747.1	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.28915	4.617380000000001	4.94561	0.0319595	0.0150263	0.14477	0.0994339
chr21	9332385	9332484	7367455	0	+	0.272727	[0,0.28]	chr21	751926	7	INTRON	INTRON	ENSG00000278932	ENSG00000278932.5	ENST00000622961.3:ENST00000686553.1:ENST00000691955.1:ENST00000625153.3:ENST00000692626.1:ENST00000685951.1:ENST00000686510.1:ENST00000692884.1	lncRNA	lncRNA	lncRNA	lncRNA	0	38	2	4.28915	4.617380000000001	4.94561	0.0319595	0.0150263	0.14477	0.0994339
chr11	118785352	118785451	5046312	0	-	0.393939	(0.378,0.408]	chr11	475799	38	INTRON	INTRON	DDX6	ENSG00000110367.14	ENST00000534980.7:ENST00000620157.4:ENST00000526070.2:ENST00000525082.1:ENST00000531971.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	34	2	4.31699	4.617375	4.91776	0.0250408	0.00196368	0.12011	0.0411469
chr5	32300666	32300766	2598277	0	-	0.39	(0.378,0.408]	chr5	246856	38	INTRON	INTRON	MTMR12	ENSG00000150712.11	ENST00000280285.9:ENST00000382142.8:ENST00000264934.5:ENST00000505419.5:ENST00000513622.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	34	2	4.31699	4.617375	4.91776	0.0250408	0.00196368	0.12011	0.0411469
chr6	70677410	70677510	2895837	0	+	0.4	(0.378,0.408]	chr6	274092	83	INTRON	INTRON	SMAP1	ENSG00000112305.15	ENST00000370452.7:ENST00000316999.9:ENST00000370455.8:ENST00000619054.4	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.31699	4.617375	4.91776	0.0250408	0.00196368	0.12011	0.0411469
chr6	4799703	4799803	2791095	0	+	0.37	(0.35,0.378]	chr6	263598	225	INTRON	INTRON	CDYL	ENSG00000153046.18	ENST00000328908.9:ENST00000491864.1:ENST00000440139.5:ENST00000483019.1:ENST00000397588.8:ENST00000472453.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	72	2	3.69928	4.616994999999999	5.53471	6.96925e-4	3.94786e-4	0.024224	0.0178567
chr12	49753872	49753969	5135059	0	+	0.340206	(0.32,0.35]	chr12	484147	4	INTRON	INTRON	TMBIM6	ENSG00000139644.13	ENST00000546796.5:ENST00000549966.5:ENST00000547832.5:ENST00000547187.5:ENST00000267115.10:ENST00000552699.5:ENST00000552635.5:ENST00000546914.5:ENST00000549445.5:ENST00000549385.5:ENST00000548201.5:ENST00000423828.5:ENST00000550445.5:ENST00000549130.5:ENST00000552370.5:ENST00000395006.8:ENST00000547798.1:ENST00000553022.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	35	2	4.36755	4.616885	4.86622	0.0300552	0.00354075	0.129138	0.0546236
chr1	231536812	231536912	337684	0	+	0.41	(0.408,0.44]	chr1	39314	28	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	TSNAX	ENSG00000116918.15	ENST00000413309.3:ENST00000602825.5:ENST00000366639.9:ENST00000476913.1:ENST00000475168.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	70	2	3.93732	4.61672	5.29612	0.00113523	1.0367e-4	0.0307488	0.00863144
chr3	156545334	156545433	1844412	0	-	0.343434	(0.32,0.35]	chr3	185581	5	INTRON	INTRON	SSR3	ENSG00000114850.7	ENST00000265044.7:ENST00000467789.5:ENST00000476217.5:ENST00000498205.5:ENST00000478842.5:ENST00000464138.1:ENST00000463503.5:ENST00000496050.1:ENST00000467733.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	36	2	4.17181	4.6166	5.06139	0.04531	0.00179023	0.149888	0.0392749
chr5	66027773	66027873	2371876	0	+	0.35	(0.32,0.35]	chr5	228555	1	SS3_PROX	SS3_PROX:INTRON	ERBIN	ENSG00000112851.15	ENST00000380943.6:ENST00000416865.6:ENST00000380935.5:ENST00000284037.10:ENST00000380938.6:ENST00000511297.5:ENST00000506030.5:ENST00000508515.1	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.17181	4.6166	5.06139	0.04531	0.00179023	0.149888	0.0392749
chrX	77924034	77924128	7685167	0	+	0.340426	(0.32,0.35]	chrX	786838	10	EXON_LNCRNA	EXON_LNCRNA:INTRON	ENSG00000248503:ATP7A:PGK1	ENSG00000248503.3:ENSG00000165240.22:ENSG00000102144.15	ENST00000686088.1:ENST00000693051.1:ENST00000341514.11:ENST00000688746.1:ENST00000688338.1:ENST00000685264.1:ENST00000686515.1:ENST00000687086.1:ENST00000689530.1:ENST00000686999.1:ENST00000642523.1:ENST00000644362.1:ENST00000343533.10:ENST00000686543.1:ENST00000686033.1:ENST00000692908.1:ENST00000686688.1:ENST00000686480.1:ENST00000689649.1:ENST00000686416.1:ENST00000682742.2:ENST00000685434.1:ENST00000693387.1:ENST00000688249.1:ENST00000689891.1:ENST00000691152.1:ENST00000688889.1:ENST00000687984.1:ENST00000685208.1:ENST00000687599.1:ENST00000685885.1:ENST00000687082.1:ENST00000693167.1:ENST00000692729.1:ENST00000645454.1:ENST00000686896.1:ENST00000689731.1:ENST00000684798.1:ENST00000686560.1:ENST00000686464.1:ENST00000686050.1:ENST00000602791.2:ENST00000686133.1:ENST00000645094.1:ENST00000689541.1:ENST00000642651.1:ENST00000693398.1:ENST00000688165.1:ENST00000692110.1:ENST00000687325.1:ENST00000689767.1:ENST00000687628.1:ENST00000691456.1	protein_coding	protein_coding	protein_coding:transcribed_processed_pseudogene	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	36	2	4.17181	4.6166	5.06139	0.04531	0.00179023	0.149888	0.0392749
chr1	176118977	176119076	590821	0	-	0.252525	[0,0.28]	chr1	70926	19	INTRON	INTRON	COP1	ENSG00000143207.21	ENST00000367669.8:ENST00000367667.5:ENST00000367666.5:ENST00000649803.1:ENST00000308769.12:ENST00000459744.5:ENST00000498306.5:ENST00000491600.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	37	2	4.38387	4.61659	4.84931	0.0501911	0.00779241	0.156383	0.0787356
chr11	31665942	31666042	4762385	0	+	0.26	[0,0.28]	chr11	440407	16	INTRON	INTRON	ELP4	ENSG00000109911.19	ENST00000639878.1:ENST00000379163.10:ENST00000350638.10:ENST00000638347.1:ENST00000640961.2:ENST00000640081.1:ENST00000640342.1:ENST00000640231.1:ENST00000638917.1:ENST00000395934.2:ENST00000640954.1:ENST00000638184.1:ENST00000638984.1:ENST00000640790.1:ENST00000639097.1:ENST00000638828.1:ENST00000639182.1:ENST00000638317.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	37	2	4.38387	4.61659	4.84931	0.0501911	0.00779241	0.156383	0.0787356
chr4	17836369	17836465	1927322	0	+	0.21875	[0,0.28]	chr4	193778	15	INTRON	INTRON	NCAPG	ENSG00000109805.10	ENST00000251496.7:ENST00000514176.5:ENST00000510063.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	37	2	4.38387	4.61659	4.84931	0.0501911	0.00779241	0.156383	0.0787356
chr9	123210384	123210484	4339895	0	-	0.26	[0,0.28]	chr9	398947	257	INTRON	INTRON	STRBP	ENSG00000165209.19	ENST00000348403.10:ENST00000360998.3:ENST00000407982.6:ENST00000479114.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	37	2	4.38387	4.61659	4.84931	0.0501911	0.00779241	0.156383	0.0787356
chr1	53807455	53807555	460295	0	-	0.39	(0.378,0.408]	chr1	55409	4	SS5_PROX	SS5_PROX:INTRON	NDC1	ENSG00000058804.12	ENST00000371429.4	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.42349	4.616585000000001	4.80968	0.00992961	0.00679828	0.0877296	0.0711802
chr16	89754209	89754308	6544154	0	-	0.383838	(0.378,0.408]	chr16	634440	16	INTRON	INTRON	FANCA	ENSG00000187741.16	ENST00000561667.2:ENST00000389301.8:ENST00000568369.6:ENST00000564475.6:ENST00000696275.1:ENST00000696287.1:ENST00000696286.1:ENST00000696274.1:ENST00000567510.2:ENST00000696291.1:ENST00000305699.15:ENST00000567988.5:ENST00000561660.1:ENST00000563510.5:ENST00000563318.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	34	2	4.42349	4.616585000000001	4.80968	0.00992961	0.00679828	0.0877296	0.0711802
chr2	55233749	55233833	781605	0	+	0.428571	(0.408,0.44]	chr2	87985	5	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPS27A	ENSG00000143947.15	ENST00000402285.7:ENST00000449323.5:ENST00000404735.1:ENST00000272317.11:ENST00000471772.6:ENST00000478196.6:ENST00000495843.1:ENST00000468810.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	72	2	3.20437	4.6164000000000005	6.02843	0.00306596	4.71156e-5	0.0509893	0.00593131
chr11	495936	496032	4888757	0	-	0.34375	(0.32,0.35]	chr11	457575	5	INTRON	INTRON	RNH1	ENSG00000023191.17	ENST00000534797.5:ENST00000397614.5:ENST00000397604.7:ENST00000354420.7:ENST00000397615.6:ENST00000525522.5:ENST00000525701.5:ENST00000529768.5:ENST00000533410.5:ENST00000438658.6:ENST00000356187.9:ENST00000524464.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	35	2	4.46758	4.616295	4.76501	0.0119306	0.0114287	0.0962115	0.0886611
chr15	20464198	20464298	6118520	0	-	0.35	(0.32,0.35]	chr15	582461	8	INTRON	INTRON	HERC2P3	ENSG00000180229.12	ENST00000428453.5:ENST00000437318.5:ENST00000430598.5:ENST00000429257.5:ENST00000414804.5:ENST00000412154.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	35	2	4.46758	4.616295	4.76501	0.0119306	0.0114287	0.0962115	0.0886611
chr21	36036751	36036850	7458474	0	-	0.323232	(0.32,0.35]	chr21	759961	1	INTRON	INTRON	SETD4	ENSG00000185917.14	ENST00000399212.5:ENST00000332131.9:ENST00000481477.5:ENST00000399215.5:ENST00000487297.5:ENST00000469482.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	35	2	4.46758	4.616295	4.76501	0.0119306	0.0114287	0.0962115	0.0886611
chr12	45900171	45900270	5124443	0	+	0.50505	(0.476,0.515]	chr12	483398	61	INTRON	INTRON	ARID2	ENSG00000189079.17	ENST00000334344.11:ENST00000479608.5:ENST00000444670.5:ENST00000457135.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	75	2	3.83511	4.6161	5.39709	2.63754e-4	2.55871e-4	0.0149561	0.0142249
chr15	72480907	72481007	6059226	0	+	0.27	[0,0.28]	chr15	576852	55	INTRON	INTRON	ARIH1	ENSG00000166233.15	ENST00000379887.9:ENST00000570085.5:ENST00000564062.1:ENST00000567762.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	37	2	4.47254	4.61609	4.75964	0.0232081	0.020991	0.122348	0.118148
chr9	85977946	85978019	4149305	0	+	0.273973	[0,0.28]	chr9	378451	1	SS3_PROX	SS3_PROX:INTRON	NAA35	ENSG00000135040.16	ENST00000361671.10:ENST00000376040.2	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	4.47254	4.61609	4.75964	0.0232081	0.020991	0.122348	0.118148
chr10	28582698	28582798	4414301	0	+	0.32	(0.28,0.32]	chr10	407148	443	INTRON	INTRON	WAC	ENSG00000095787.24	ENST00000680735.1:ENST00000375664.8:ENST00000428935.6:ENST00000651598.1:ENST00000628285.3:ENST00000681112.1:ENST00000679570.1:ENST00000375646.5:ENST00000354911.9:ENST00000347934.8:ENST00000420266.6:ENST00000651885.1:ENST00000651441.1:ENST00000679398.1:ENST00000424454.5:ENST00000442148.6:ENST00000448193.5:ENST00000414108.6:ENST00000679428.1:ENST00000439676.5:ENST00000345541.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	92	2	2.78004	4.61602	6.452	0.0193244	4.46102e-6	0.108861	0.00142156
chr11	3750425	3750525	4894691	0	-	0.31	(0.28,0.32]	chr11	458870	54	INTRON	INTRON	NUP98	ENSG00000110713.17	ENST00000359171.8:ENST00000324932.12:ENST00000650171.1:ENST00000355260.7:ENST00000397004.8:ENST00000397007.8:ENST00000527104.5:ENST00000529379.1:ENST00000397013.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	38	2	4.03345	4.615935	5.19842	0.0704058	0.00152333	0.184298	0.0360297
chr7	130191823	130191922	3638616	0	-	0.30303	(0.28,0.32]	chr7	338389	61	INTRON	INTRON	TMEM209	ENSG00000146842.17	ENST00000397622.7:ENST00000473456.5:ENST00000462753.5	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.03345	4.615935	5.19842	0.0704058	0.00152333	0.184298	0.0360297
chr1	51497607	51497707	454141	0	-	0.35	(0.32,0.35]	chr1	54447	159	INTRON	INTRON	EPS15	ENSG00000085832.17	ENST00000371733.8:ENST00000371730.6:ENST00000371727.5:ENST00000471391.1:ENST00000465467.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	36	2	4.27113	4.61542	4.95971	0.0199982	0.00663522	0.120668	0.0703181
chr5	81733129	81733229	2666184	0	-	0.35	(0.32,0.35]	chr5	252440	220	INTRON	INTRON	SSBP2	ENSG00000145687.17	ENST00000320672.9:ENST00000615665.4:ENST00000509053.5:ENST00000514493.5:ENST00000505980.5:ENST00000515395.5:ENST00000507655.5:ENST00000507472.5:ENST00000509013.2:ENST00000504174.5:ENST00000512098.5:ENST00000506960.5:ENST00000508912.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	36	2	4.27113	4.61542	4.95971	0.0199982	0.00663522	0.120668	0.0703181
chr6	68660226	68660326	2886568	0	+	0.14	[0,0.28]	chr6	273730	204	INTRON	INTRON	ADGRB3	ENSG00000135298.15	ENST00000370598.6:ENST00000684661.1:ENST00000546190.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	85	2	3.33854	4.61534	5.89214	0.00278022	9.08725e-4	0.0488412	0.0278396
chr1	220132808	220132907	319175	0	+	0.363636	(0.35,0.378]	chr1	36543	56	INTRON	INTRON	IARS2	ENSG00000067704.10	ENST00000366922.3:ENST00000490891.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	34	2	4.48184	4.61522	4.7486	0.0191702	0.00418965	0.108861	0.0591344
chr13	19691490	19691590	5552020	0	-	0.37	(0.35,0.378]	chr13	530672	125	INTRON	INTRON	PSPC1	ENSG00000121390.19	ENST00000471658.5:ENST00000492741.5:ENST00000635562.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	0	34	2	4.48184	4.61522	4.7486	0.0191702	0.00418965	0.108861	0.0591344
chr2	48495478	48495578	778545	0	+	0.36	(0.35,0.378]	chr2	87598	4	SS3_PROX	SS3_PROX:INTRON	PPP1R21	ENSG00000162869.16	ENST00000431614.5:ENST00000294952.13:ENST00000449090.6:ENST00000281394.8:ENST00000416913.5:ENST00000455978.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	34	2	4.48184	4.61522	4.7486	0.0191702	0.00418965	0.108861	0.0591344
chr22	20842221	20842320	7559518	0	-	0.353535	(0.35,0.378]	chr22	773216	31	INTRON	INTRON	PI4KA	ENSG00000241973.11	ENST00000255882.11:ENST00000485963.5:ENST00000449120.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	34	2	4.48184	4.61522	4.7486	0.0191702	0.00418965	0.108861	0.0591344
chr22	24018604	24018703	7485233	0	+	0.373737	(0.35,0.378]	chr22	763741	65	INTRON	INTRON	CABIN1	ENSG00000099991.18	ENST00000454754.5:ENST00000263119.10:ENST00000617531.4:ENST00000405822.6:ENST00000445422.5:ENST00000398319.6	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.48184	4.61522	4.7486	0.0191702	0.00418965	0.108861	0.0591344
chr3	183853848	183853947	1881290	0	-	0.373737	(0.35,0.378]	chr3	188011	92	INTRON	INTRON	PARL	ENSG00000175193.14	ENST00000639100.1:ENST00000317096.9:ENST00000638817.1:ENST00000311101.9:ENST00000435888.5:ENST00000639900.1:ENST00000421484.5:ENST00000449306.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	34	2	4.48184	4.61522	4.7486	0.0191702	0.00418965	0.108861	0.0591344
chr5	139679598	139679682	2501516	0	+	0.369048	(0.35,0.378]	chr5	239089	4	SS3_PROX	SS3_PROX:INTRON	CXXC5	ENSG00000171604.12	ENST00000502295.1:ENST00000504944.1:ENST00000302517.8:ENST00000507139.5:ENST00000504844.1:ENST00000502336.5:ENST00000520967.1:ENST00000511048.1:ENST00000512816.1:ENST00000509238.1:ENST00000502716.1:ENST00000503511.1:ENST00000511457.1	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.48184	4.61522	4.7486	0.0191702	0.00418965	0.108861	0.0591344
chr22	49560863	49560963	7601688	0	-	0.55	(0.515,0.57]	chr22	778566	1193	INTRON	INTRON	MIR3667HG	ENSG00000188511.13	ENST00000414287.5:ENST00000416411.1	lncRNA	lncRNA	lncRNA	lncRNA	2	90	2	3.44592	4.6150649999999995	5.78421	8.97344e-5	1.63043e-5	0.00844245	0.00304426
chr12	131779619	131779717	5249788	0	+	0.367347	(0.35,0.378]	chr12	499215	9	INTRON	INTRON	SFSWAP	ENSG00000061936.10	ENST00000261674.9:ENST00000538548.5:ENST00000541286.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	34	2	4.58537	4.61497	4.64457	0.012652	0.00703328	0.0926667	0.0754576
chr3	23952938	23953038	1388762	0	+	0.36	(0.35,0.378]	chr3	145444	63	INTRON	INTRON	NR1D2	ENSG00000174738.13	ENST00000312521.9:ENST00000383773.8:ENST00000492552.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	34	2	4.58537	4.61497	4.64457	0.012652	0.00703328	0.0926667	0.0754576
chr1	19123260	19123360	385871	0	-	0.51	(0.476,0.515]	chr1	45798	2	SS3_PROX	SS3_PROX:INTRON	UBR4	ENSG00000127481.15	ENST00000375254.8:ENST00000425413.5:ENST00000417040.1	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.53023	4.614705000000001	4.69918	0.0119748	0.00400966	0.0899583	0.057767
chr10	68510493	68510592	4640111	0	-	0.50505	(0.476,0.515]	chr10	426794	34	INTRON	INTRON	SLC25A16	ENSG00000122912.15	ENST00000609923.6:ENST00000265870.7:ENST00000493963.5:ENST00000491102.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	33	2	4.53023	4.614705000000001	4.69918	0.0119748	0.00400966	0.0899583	0.057767
chr11	67180819	67180919	4813067	0	+	0.48	(0.476,0.515]	chr11	448125	1	SS3_PROX	SS3_PROX:INTRON	KDM2A	ENSG00000173120.15	ENST00000529006.7:ENST00000398645.6:ENST00000308783.9	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.53023	4.614705000000001	4.69918	0.0119748	0.00400966	0.0899583	0.057767
chr13	50228963	50229062	5492455	0	+	0.50505	(0.476,0.515]	chr13	526057	42	INTRON	INTRON	DLEU1	ENSG00000176124.15	ENST00000467721.5:ENST00000468522.5:ENST00000490577.5:ENST00000491341.5:ENST00000491615.5:ENST00000463474.7:ENST00000468168.5:ENST00000476738.5:ENST00000461527.7:ENST00000486895.5:ENST00000485007.5:ENST00000475913.5:ENST00000484529.5:ENST00000473075.3:ENST00000483444.5	lncRNA	lncRNA	lncRNA	lncRNA	0	33	2	4.53023	4.614705000000001	4.69918	0.0119748	0.00400966	0.0899583	0.057767
chr6	35070300	35070399	2851097	0	+	0.484848	(0.476,0.515]	chr6	269300	97	INTRON	INTRON	ANKS1A	ENSG00000064999.15	ENST00000360359.5:ENST00000649117.1:ENST00000470698.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	33	2	4.53023	4.614705000000001	4.69918	0.0119748	0.00400966	0.0899583	0.057767
chr1	26470416	26470515	50589	0	+	0.494949	(0.476,0.515]	chr1	6370	14	UTR3	UTR3:EXON_MRNA	DHDDS	ENSG00000117682.17	ENST00000434391.6:ENST00000236342.12:ENST00000360009.6:ENST00000431933.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	33	2	4.61402	4.614605	4.61519	0.00947755	0.00528365	0.0817766	0.0656295
chr10	74076472	74076570	4455294	0	+	0.510204	(0.476,0.515]	chr10	411422	17	EXON_LNCRNA	EXON_LNCRNA:INTRON	VCL	ENSG00000035403.18	ENST00000623461.3:ENST00000372755.7:ENST00000624354.3:ENST00000211998.10:ENST00000478896.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	33	2	4.61402	4.614605	4.61519	0.00947755	0.00528365	0.0817766	0.0656295
chr14	67925239	67925339	5766428	0	+	0.48	(0.476,0.515]	chr14	547062	160	INTRON	INTRON	RAD51B	ENSG00000182185.19	ENST00000487861.5:ENST00000471583.6:ENST00000479335.5:ENST00000487270.5:ENST00000488612.5:ENST00000553595.5:ENST00000497460.5:ENST00000492236.5:ENST00000554244.5:ENST00000478014.5:ENST00000469165.6:ENST00000460526.5:ENST00000468382.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	33	2	4.61402	4.614605	4.61519	0.00947755	0.00528365	0.0817766	0.0656295
chr18	9161524	9161623	6869178	0	+	0.515152	(0.476,0.515]	chr18	680561	233	INTRON	INTRON	ANKRD12	ENSG00000101745.17	ENST00000585234.5:ENST00000262126.9:ENST00000577992.1:ENST00000540578.6:ENST00000581635.5:ENST00000400020.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	33	2	4.61402	4.614605	4.61519	0.00947755	0.00528365	0.0817766	0.0656295
chr3	60417017	60417117	1713784	0	-	0.49	(0.476,0.515]	chr3	176138	3363	INTRON	INTRON	FHIT	ENSG00000189283.10	ENST00000492590.6:ENST00000476844.5:ENST00000468189.5:ENST00000488467.5	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.61402	4.614605	4.61519	0.00947755	0.00528365	0.0817766	0.0656295
chrX	11215979	11216079	7759509	0	-	0.49	(0.476,0.515]	chrX	793496	186	INTRON	INTRON	ARHGAP6	ENSG00000047648.23	ENST00000657361.1:ENST00000380736.5:ENST00000337414.9:ENST00000495242.5:ENST00000303025.10:ENST00000489330.6:ENST00000380718.1:ENST00000380717.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	33	2	4.61402	4.614605	4.61519	0.00947755	0.00528365	0.0817766	0.0656295
chr15	27131386	27131486	5983757	0	+	0.32	(0.28,0.32]	chr15	569164	1042	INTRON	INTRON	GABRG3	ENSG00000182256.13	ENST00000615808.5:ENST00000555083.5	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.12807	4.614380000000001	5.10069	0.0338135	0.00610574	0.146709	0.0676501
chr7	138560192	138560291	3435652	0	+	0.373737	(0.35,0.378]	chr7	320015	34	INTRON	INTRON	TRIM24	ENSG00000122779.18	ENST00000343526.9:ENST00000415680.6:ENST00000497516.5:ENST00000493595.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	99	2	3.57455	4.61436	5.65417	4.33402e-4	4.59859e-5	0.0190829	0.00552588
chr2	27217101	27217178	717125	0	+	0.298701	(0.28,0.32]	chr2	82979	3	UTR3	UTR3:EXON_MRNA	ATRAID	ENSG00000138085.18	ENST00000380171.9:ENST00000405489.7:ENST00000472515.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	37	2	4.14214	4.61418	5.08622	0.0579756	0.00227525	0.167723	0.0437013
chr5	88196310	88196377	2668999	0	-	0.328358	(0.32,0.35]	chr5	252622	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	TMEM161B	ENSG00000164180.14	ENST00000514135.5:ENST00000296595.11:ENST00000511087.5:ENST00000510089.5:ENST00000506536.5:ENST00000511218.5:ENST00000512429.5:ENST00000515293.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	173	2	4.33758	4.614075	4.89057	3.80568e-5	5.05559e-7	0.00525714	3.80768e-4
chr12	42415159	42415258	5119132	0	+	0.424242	(0.408,0.44]	chr12	482988	148	INTRON	INTRON	PPHLN1	ENSG00000134283.18	ENST00000549190.5:ENST00000337898.10:ENST00000395580.7:ENST00000610488.4:ENST00000619544.4:ENST00000613154.4:ENST00000395568.6:ENST00000256678.12:ENST00000358314.12:ENST00000449194.6:ENST00000552761.5:ENST00000317560.13:ENST00000432191.6	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.334	4.613635	4.89327	0.011982	0.00458906	0.0962115	0.0595107
chr16	14981692	14981792	6305202	0	+	0.44	(0.408,0.44]	chr16	603267	44	INTRON	INTRON	PDXDC1	ENSG00000179889.20	ENST00000563679.5:ENST00000563667.5:ENST00000563522.5:ENST00000535621.6:ENST00000396410.9:ENST00000566426.1:ENST00000455313.6:ENST00000562119.5:ENST00000570001.5:ENST00000569715.5:ENST00000627450.2:ENST00000565362.5:ENST00000567306.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	34	2	4.334	4.613635	4.89327	0.011982	0.00458906	0.0962115	0.0595107
chr2	108632245	108632345	846834	0	+	0.42	(0.408,0.44]	chr2	94698	104	INTRON	INTRON	LIMS1	ENSG00000169756.17	ENST00000695516.1:ENST00000544547.6:ENST00000695517.1:ENST00000695518.1:ENST00000695519.1:ENST00000332345.10:ENST00000695520.1:ENST00000393310.5:ENST00000695521.1:ENST00000410093.5:ENST00000449684.6:ENST00000409441.5:ENST00000422797.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	34	2	4.334	4.613635	4.89327	0.011982	0.00458906	0.0962115	0.0595107
chr22	47836236	47836335	7541423	0	+	0.424242	(0.408,0.44]	chr22	770774	53	INTRON	INTRON	ENSG00000224271	ENSG00000224271.7	ENST00000664761.1:ENST00000650683.1:ENST00000651536.1:ENST00000652656.1:ENST00000651445.1:ENST00000423737.5:ENST00000650660.1:ENST00000651056.1:ENST00000652611.1:ENST00000652399.1:ENST00000652123.1:ENST00000652505.1:ENST00000652030.2:ENST00000651403.1:ENST00000652228.1:ENST00000651124.1:ENST00000651003.1:ENST00000651948.2:ENST00000651293.1:ENST00000651939.1:ENST00000650787.1:ENST00000651517.1:ENST00000651638.1:ENST00000670853.1:ENST00000652080.1:ENST00000651294.1:ENST00000652164.1:ENST00000651538.1:ENST00000651033.1:ENST00000651584.1	lncRNA	lncRNA	lncRNA	lncRNA	0	34	2	4.334	4.613635	4.89327	0.011982	0.00458906	0.0962115	0.0595107
chr2	74209479	74209571	813345	0	+	0.48913	(0.476,0.515]	chr2	90950	6	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	MTHFD2	ENSG00000065911.13	ENST00000677997.1:ENST00000677170.1:ENST00000678684.1:ENST00000409804.5:ENST00000489041.2:ENST00000470592.5:ENST00000678955.1:ENST00000394053.7:ENST00000677377.1:ENST00000679055.1:ENST00000678340.1:ENST00000409601.1:ENST00000678228.1:ENST00000462026.2:ENST00000678623.1:ENST00000678731.1:ENST00000677299.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	69	2	3.81894	4.613315	5.40769	6.23078e-4	1.96038e-4	0.0229151	0.0122528
chr10	67834747	67834846	4636341	0	-	0.454545	(0.44,0.476]	chr10	426284	67	INTRON	INTRON	DNAJC12	ENSG00000108176.15	ENST00000225171.7:ENST00000483798.6:ENST00000480963.5:ENST00000339758.7:ENST00000480180.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	33	2	4.5227	4.613125	4.70355	0.0128818	0.00383786	0.0926667	0.0562562
chr15	49218992	49219090	6019605	0	+	0.44898	(0.44,0.476]	chr15	573707	13	INTRON	INTRON	GALK2	ENSG00000156958.15	ENST00000559883.5:ENST00000559963.5:ENST00000327171.7:ENST00000560654.5:ENST00000558775.5:ENST00000559040.1:ENST00000396509.6:ENST00000558956.5:ENST00000559208.5:ENST00000560031.6:ENST00000560119.5:ENST00000558145.5:ENST00000544523.5:ENST00000560138.5:ENST00000559423.5:ENST00000559454.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	33	2	4.5227	4.613125	4.70355	0.0128818	0.00383786	0.0926667	0.0562562
chr16	595517	595616	6272761	0	+	0.454545	(0.44,0.476]	chr16	598723	47	INTRON	INTRON	RAB40C	ENSG00000197562.10	ENST00000535977.5:ENST00000569575.5:ENST00000539661.5:ENST00000566290.5:ENST00000248139.8:ENST00000568586.5:ENST00000538492.5:ENST00000565511.5:ENST00000509637.6:ENST00000563109.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	33	2	4.5227	4.613125	4.70355	0.0128818	0.00383786	0.0926667	0.0562562
chr5	6747303	6747397	2316183	0	+	0.457447	(0.44,0.476]	chr5	224304	5	INTRON	INTRON	TENT4A	ENSG00000112941.14	ENST00000230859.8:ENST00000631941.2:ENST00000511764.5:ENST00000514697.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	33	2	4.5227	4.613125	4.70355	0.0128818	0.00383786	0.0926667	0.0562562
chr7	101864142	101864242	3366830	0	+	0.45	(0.44,0.476]	chr7	315215	448	INTRON	INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000497815.5:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000607092.1:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000558469.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	33	2	4.5227	4.613125	4.70355	0.0128818	0.00383786	0.0926667	0.0562562
chr8	115536458	115536558	4030333	0	-	0.47	(0.44,0.476]	chr8	367954	208	INTRON	INTRON	TRPS1	ENSG00000104447.13	ENST00000395715.8:ENST00000640765.1:ENST00000220888.9:ENST00000519076.5:ENST00000520276.5:ENST00000519674.1	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.5227	4.613125	4.70355	0.0128818	0.00383786	0.0926667	0.0562562
chr9	134065356	134065455	4370956	0	-	0.474747	(0.44,0.476]	chr9	402333	95	INTRON	INTRON	BRD3	ENSG00000169925.17	ENST00000303407.12:ENST00000371834.6	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.5227	4.613125	4.70355	0.0128818	0.00383786	0.0926667	0.0562562
chr1	227736687	227736787	330294	0	+	0.46	(0.44,0.476]	chr1	38031	2	SS5_PROX	SS5_PROX:INTRON	SNAP47	ENSG00000143740.15	ENST00000681827.1:ENST00000679575.1:ENST00000475930.1:ENST00000680854.1:ENST00000681006.1:ENST00000366760.5:ENST00000681447.1:ENST00000680992.1:ENST00000680695.1:ENST00000366759.9:ENST00000315781.10:ENST00000681685.1:ENST00000681678.1:ENST00000681242.1:ENST00000681149.1:ENST00000418653.6:ENST00000617596.5:ENST00000681929.1:ENST00000478768.3:ENST00000426344.6:ENST00000680202.1:ENST00000679561.1:ENST00000470038.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	33	2	4.60647	4.613004999999999	4.61954	0.0102339	0.00506805	0.0850389	0.0646039
chr3	49090884	49090984	1692208	0	-	0.46	(0.44,0.476]	chr3	173166	34	INTRON	INTRON	QRICH1	ENSG00000198218.11	ENST00000395443.7:ENST00000357496.6:ENST00000424300.5:ENST00000411682.1:ENST00000450685.5:ENST00000437939.5:ENST00000430979.1	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.60647	4.613004999999999	4.61954	0.0102339	0.00506805	0.0850389	0.0646039
chr6	118614656	118614756	3199950	0	-	0.47	(0.44,0.476]	chr6	298014	407	INTRON	INTRON	CEP85L	ENSG00000111860.14	ENST00000368491.8:ENST00000368488.9:ENST00000434604.5:ENST00000392500.7:ENST00000360290.7:ENST00000419517.2:ENST00000483035.5:ENST00000476150.5:ENST00000462101.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	33	2	4.60647	4.613004999999999	4.61954	0.0102339	0.00506805	0.0850389	0.0646039
chr19	9667951	9668051	7133433	0	-	0.31	(0.28,0.32]	chr19	718911	67	INTRON	INTRON	ZNF562	ENSG00000171466.10	ENST00000453372.7:ENST00000293648.8:ENST00000590155.5:ENST00000585688.5:ENST00000587392.5:ENST00000588653.5:ENST00000589542.1:ENST00000585350.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	37	2	4.23719	4.6129549999999995	4.98872	0.0264147	0.00838468	0.133676	0.0774402
chr2	9623763	9623861	1064910	0	-	0.295918	(0.28,0.32]	chr2	113602	32	INTRON	INTRON	YWHAQ	ENSG00000134308.14	ENST00000238081.8:ENST00000381844.8:ENST00000446619.1	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	4.23719	4.6129549999999995	4.98872	0.0264147	0.00838468	0.133676	0.0774402
chrX	153758697	153758796	7911283	0	-	0.282828	(0.28,0.32]	chrX	805122	198	INTRON	INTRON	PLXNB3-AS1	ENSG00000232725.1	ENST00000434284.1	lncRNA	lncRNA	lncRNA	lncRNA	0	37	2	4.23719	4.6129549999999995	4.98872	0.0264147	0.00838468	0.133676	0.0774402
chr15	58704435	58704534	6193061	0	-	0.373737	(0.35,0.378]	chr15	589976	57	INTRON	INTRON	ADAM10	ENSG00000137845.15	ENST00000260408.8:ENST00000402627.5:ENST00000561288.1:ENST00000559053.1:ENST00000558733.5:ENST00000439637.5:ENST00000497846.5:ENST00000558004.1:ENST00000560608.5:ENST00000561149.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	35	2	4.1971	4.61271	5.02832	0.0367539	0.00156444	0.138959	0.0365263
chrX	147923934	147924031	7729333	0	+	0.371134	(0.35,0.378]	chrX	790893	16	INTRON	INTRON	FMR1	ENSG00000102081.16	ENST00000370475.9:ENST00000440235.6:ENST00000218200.12:ENST00000370471.7:ENST00000616614.4:ENST00000370477.5:ENST00000439526.6:ENST00000334557.10:ENST00000687593.1:ENST00000691214.1:ENST00000692108.1:ENST00000691111.1:ENST00000685491.1:ENST00000691793.1:ENST00000492846.2:ENST00000689570.1:ENST00000495717.6:ENST00000616382.5:ENST00000621453.5:ENST00000693452.1:ENST00000690137.1:ENST00000689517.1:ENST00000690216.1:ENST00000693512.1:ENST00000686086.1:ENST00000692091.1:ENST00000475038.3:ENST00000621987.5:ENST00000370470.5:ENST00000693079.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	35	2	4.1971	4.61271	5.02832	0.0367539	0.00156444	0.138959	0.0365263
chr1	26846907	26847007	52416	0	+	0.6	(0.57,1]	chr1	6697	139	INTRON	INTRON	ZDHHC18	ENSG00000204160.12	ENST00000374142.9:ENST00000374141.6:ENST00000534643.5	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.16881	4.61165	5.05449	0.00574776	1.79828e-4	0.0681402	0.0121697
chr19	10961483	10961565	7015560	0	+	0.621951	(0.57,1]	chr19	697159	3	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	SMARCA4	ENSG00000127616.20	ENST00000644737.1:ENST00000642726.1:ENST00000646484.1:ENST00000643549.1:ENST00000643296.1:ENST00000647230.1:ENST00000642628.1:ENST00000646510.1:ENST00000429416.8:ENST00000644760.1:ENST00000344626.10:ENST00000646693.2:ENST00000645460.1:ENST00000541122.6:ENST00000589677.5:ENST00000444061.8:ENST00000590574.6	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.16881	4.61165	5.05449	0.00574776	1.79828e-4	0.0681402	0.0121697
chr12	10721624	10721720	5265997	0	-	0.375	(0.35,0.378]	chr12	502142	3	SS5_PROX	SS5_PROX:INTRON	YBX3	ENSG00000060138.13	ENST00000228251.9:ENST00000279550.11:ENST00000540447.5:ENST00000546298.5:ENST00000536107.5:ENST00000540747.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	35	2	4.29961	4.61158	4.92355	0.0158483	0.00573514	0.109464	0.0657377
chr2	45521931	45522031	1112455	0	-	0.36	(0.35,0.378]	chr2	119293	332	INTRON	INTRON	SRBD1	ENSG00000068784.13	ENST00000263736.5:ENST00000475073.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	35	2	4.29961	4.61158	4.92355	0.0158483	0.00573514	0.109464	0.0657377
chr5	62498202	62498301	2363878	0	+	0.363636	(0.35,0.378]	chr5	227945	37	INTRON	INTRON	IPO11	ENSG00000086200.17	ENST00000424533.5:ENST00000325324.11:ENST00000409296.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	35	2	4.29961	4.61158	4.92355	0.0158483	0.00573514	0.109464	0.0657377
chr5	178625375	178625472	2779022	0	-	0.360825	(0.35,0.378]	chr5	262176	16	INTRON	INTRON	CLK4	ENSG00000113240.14	ENST00000520878.5:ENST00000316308.9:ENST00000522136.5:ENST00000521621.5:ENST00000519583.5:ENST00000520199.5:ENST00000520909.5:ENST00000520126.1:ENST00000522556.1:ENST00000520957.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	35	2	4.29961	4.61158	4.92355	0.0158483	0.00573514	0.109464	0.0657377
chr19	16078049	16078139	7025983	0	+	0.577778	(0.57,1]	chr19	699177	2	UTR3	UTR3:UTR5:EXON_MRNA:INTRON	TPM4	ENSG00000167460.17	ENST00000646974.2:ENST00000586499.6:ENST00000647464.2:ENST00000668959.1:ENST00000590180.3:ENST00000655004.1:ENST00000642789.1:ENST00000653979.1:ENST00000645471.1:ENST00000659595.1:ENST00000647037.1:ENST00000587201.6:ENST00000643579.2:ENST00000586193.6:ENST00000643494.1:ENST00000670382.1:ENST00000300933.9:ENST00000646575.1:ENST00000586833.7:ENST00000642221.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	48	2	4.019	4.61148	5.20396	5.65393e-5	3.13356e-5	0.00613846	0.00467101
chr17	60264515	60264614	6804588	0	-	0.363636	(0.35,0.378]	chr17	672314	80	INTRON	INTRON	USP32	ENSG00000170832.13	ENST00000300896.9:ENST00000590133.5:ENST00000589335.5:ENST00000393003.7	protein_coding	protein_coding	protein_coding	protein_coding	1	72	2	3.45621	4.610355	5.7645	0.0011842	2.7432e-4	0.031662	0.0151711
chr1	19169034	19169134	386392	0	-	0.42	(0.408,0.44]	chr1	46011	2	SS5_PROX	SS5_PROX:INTRON	UBR4	ENSG00000127481.15	ENST00000375254.8:ENST00000419533.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	33	2	4.51604	4.61007	4.7041	0.0137419	0.00381677	0.0949306	0.0562562
chr2	151458227	151458310	893712	0	+	0.433735	(0.408,0.44]	chr2	98999	3	SS5_PROX	SS5_PROX:INTRON	RIF1	ENSG00000080345.18	ENST00000453091.6:ENST00000428287.6:ENST00000444746.7:ENST00000243326.9:ENST00000430328.6	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.51604	4.61007	4.7041	0.0137419	0.00381677	0.0949306	0.0562562
chr7	50658935	50659034	3531320	0	-	0.414141	(0.408,0.44]	chr7	329446	316	INTRON	INTRON	GRB10	ENSG00000106070.20	ENST00000335866.7:ENST00000398812.6:ENST00000398810.6:ENST00000401949.6:ENST00000402578.5:ENST00000644769.1:ENST00000403097.6:ENST00000644879.1:ENST00000406641.5:ENST00000402497.6:ENST00000357271.9:ENST00000643299.1:ENST00000407526.6:ENST00000645075.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	33	2	4.51604	4.61007	4.7041	0.0137419	0.00381677	0.0949306	0.0562562
chr10	80164443	80164543	4657837	0	-	0.44	(0.408,0.44]	chr10	429093	3	SS3_PROX	SS3_PROX:INTRON	ANXA11	ENSG00000122359.18	ENST00000372231.7:ENST00000438331.5:ENST00000422982.8:ENST00000265447.8	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.59979	4.60994	4.62009	0.0109537	0.00504155	0.0873034	0.0646039
chr13	113344662	113344762	5652270	0	-	0.42	(0.408,0.44]	chr13	538643	4	SS5_PROX	SS5_PROX:INTRON	GRTP1	ENSG00000139835.14	ENST00000375431.9:ENST00000620217.4:ENST00000375430.8:ENST00000326039.3	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.59979	4.60994	4.62009	0.0109537	0.00504155	0.0873034	0.0646039
chr17	17304581	17304681	6564864	0	+	0.42	(0.408,0.44]	chr17	638140	1	SS5_PROX	SS5_PROX:INTRON	NT5M	ENSG00000205309.14	ENST00000616989.1:ENST00000478373.6:ENST00000389022.9:ENST00000470418.5:ENST00000483704.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	33	2	4.59979	4.60994	4.62009	0.0109537	0.00504155	0.0873034	0.0646039
chr2	24798977	24799075	712146	0	+	0.428571	(0.408,0.44]	chr2	82362	47	INTRON	INTRON	CENPO	ENSG00000138092.11	ENST00000473476.5:ENST00000473706.5:ENST00000491031.5:ENST00000380834.7:ENST00000486527.6:ENST00000260662.2:ENST00000498362.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	33	2	4.59979	4.60994	4.62009	0.0109537	0.00504155	0.0873034	0.0646039
chr3	17319816	17319915	1626171	0	-	0.434343	(0.408,0.44]	chr3	168115	113	INTRON	INTRON	TBC1D5	ENSG00000131374.15	ENST00000253692.11:ENST00000696125.1:ENST00000414318.2:ENST00000429383.8:ENST00000446818.6:ENST00000429924.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	33	2	4.59979	4.60994	4.62009	0.0109537	0.00504155	0.0873034	0.0646039
chr3	158269754	158269854	1539880	0	+	0.42	(0.408,0.44]	chr3	160296	381	INTRON	INTRON	RSRC1	ENSG00000174891.14	ENST00000480820.5:ENST00000295930.7:ENST00000471994.5:ENST00000683733.1:ENST00000682221.1:ENST00000683831.1:ENST00000683516.1:ENST00000482822.3:ENST00000476899.6:ENST00000464171.5:ENST00000611884.5:ENST00000682164.1:ENST00000684604.1:ENST00000683899.1:ENST00000682500.1:ENST00000684683.1:ENST00000312179.10:ENST00000475278.6:ENST00000480119.5:ENST00000471911.5:ENST00000683137.1:ENST00000477788.5:ENST00000496268.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	33	2	4.59979	4.60994	4.62009	0.0109537	0.00504155	0.0873034	0.0646039
chr7	140024468	140024559	3658845	0	-	0.43956	(0.408,0.44]	chr7	339550	9	UTR3	UTR3:EXON_MRNA	PARP12	ENSG00000059378.13	ENST00000263549.8:ENST00000473341.5:ENST00000488726.5:ENST00000489809.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	33	2	4.59979	4.60994	4.62009	0.0109537	0.00504155	0.0873034	0.0646039
chr18	174506	174606	6854987	0	+	0.48	(0.476,0.515]	chr18	679508	73	INTRON	INTRON	USP14	ENSG00000101557.15	ENST00000582707.5:ENST00000400266.7:ENST00000261601.8:ENST00000578942.5:ENST00000383589.6:ENST00000583119.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	33	2	4.44128	4.60992	4.77856	0.0151924	0.00305743	0.0994339	0.0509893
chr18	9493217	9493317	6871311	0	+	0.49	(0.476,0.515]	chr18	680716	134	INTRON	INTRON	RALBP1	ENSG00000017797.13	ENST00000019317.8:ENST00000585015.6:ENST00000383432.8:ENST00000609094.2:ENST00000458039.3:ENST00000577221.1	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.44128	4.60992	4.77856	0.0151924	0.00305743	0.0994339	0.0509893
chr19	40450187	40450283	7184423	0	-	0.479167	(0.476,0.515]	chr19	726739	18	INTRON	INTRON	BLVRB	ENSG00000090013.11	ENST00000643519.1:ENST00000263368.9:ENST00000595483.5:ENST00000643596.1:ENST00000601346.5:ENST00000597870.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	33	2	4.44128	4.60992	4.77856	0.0151924	0.00305743	0.0994339	0.0509893
chr4	39854140	39854239	2130931	0	-	0.515152	(0.476,0.515]	chr4	210094	41	INTRON	INTRON	PDS5A	ENSG00000121892.15	ENST00000303538.13	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.44128	4.60992	4.77856	0.0151924	0.00305743	0.0994339	0.0509893
chr5	138510064	138510164	2732326	0	-	0.51	(0.476,0.515]	chr5	257370	1	SS5_PROX	SS5_PROX:INTRON	ETF1	ENSG00000120705.13	ENST00000360541.10:ENST00000499810.6:ENST00000503014.5	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.44128	4.60992	4.77856	0.0151924	0.00305743	0.0994339	0.0509893
chr1	20782917	20783016	389825	0	-	0.393939	(0.378,0.408]	chr1	46582	20	INTRON	INTRON	HP1BP3	ENSG00000127483.19	ENST00000438032.6:ENST00000312239.10:ENST00000424732.5:ENST00000417710.5:ENST00000375000.5:ENST00000437575.5:ENST00000419490.5:ENST00000414993.1:ENST00000443615.1	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.10661	4.60988	5.11315	0.0399023	9.26795e-4	0.143072	0.0278442
chr12	9673127	9673225	5075575	0	+	0.397959	(0.378,0.408]	chr12	479882	30	INTRON	INTRON	CLEC2D	ENSG00000069493.15	ENST00000536355.5:ENST00000487752.1:ENST00000290855.11:ENST00000325960.11:ENST00000261340.11:ENST00000444971.6:ENST00000492359.6:ENST00000479877.5:ENST00000261339.10:ENST00000543300.5:ENST00000545918.5:ENST00000466035.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	35	2	4.10661	4.60988	5.11315	0.0399023	9.26795e-4	0.143072	0.0278442
chr13	50549037	50549136	5495683	0	+	0.383838	(0.378,0.408]	chr13	526202	153	INTRON	INTRON	DLEU1	ENSG00000176124.15	ENST00000470726.7:ENST00000479420.5:ENST00000647700.1:ENST00000484869.6	lncRNA	lncRNA	lncRNA	lncRNA	0	35	2	4.10661	4.60988	5.11315	0.0399023	9.26795e-4	0.143072	0.0278442
chr8	104532263	104532363	4014154	0	-	0.4	(0.378,0.408]	chr8	367438	3	SS3_PROX	SS3_PROX:INTRON	LRP12	ENSG00000147650.12	ENST00000424843.6:ENST00000276654.10:ENST00000520770.1:ENST00000519675.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	35	2	4.10661	4.60988	5.11315	0.0399023	9.26795e-4	0.143072	0.0278442
chr1	8516013	8516113	370753	0	-	0.51	(0.476,0.515]	chr1	43487	42	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000377464.5:ENST00000400907.6:ENST00000656437.1:ENST00000464972.5:ENST00000659924.1:ENST00000480342.5:ENST00000507012.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	33	2	4.526	4.6096	4.6932	0.00753088	0.00699701	0.0754576	0.074841
chr1	206703666	206703766	302323	0	+	0.49	(0.476,0.515]	chr1	34692	178	INTRON	INTRON	MAPKAPK2	ENSG00000162889.11	ENST00000367103.4:ENST00000294981.8	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.526	4.6096	4.6932	0.00753088	0.00699701	0.0754576	0.074841
chr15	22927105	22927205	6119578	0	-	0.51	(0.476,0.515]	chr15	582606	6	INTRON	INTRON	CYFIP1	ENSG00000273749.5	ENST00000617928.5:ENST00000610365.4	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.526	4.6096	4.6932	0.00753088	0.00699701	0.0754576	0.074841
chr16	258884	258982	6271859	0	+	0.479592	(0.476,0.515]	chr16	598403	39	INTRON	INTRON	FAM234A	ENSG00000167930.17	ENST00000301679.7:ENST00000666018.1:ENST00000653392.1:ENST00000659283.1:ENST00000654053.1:ENST00000419173.5:ENST00000399932.8:ENST00000438220.5:ENST00000453430.5:ENST00000449945.5:ENST00000420046.5:ENST00000301678.7:ENST00000420500.5:ENST00000600536.1:ENST00000496874.1:ENST00000421000.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	33	2	4.526	4.6096	4.6932	0.00753088	0.00699701	0.0754576	0.074841
chr4	150970335	150970435	2271322	0	-	0.51	(0.476,0.515]	chr4	220921	409	INTRON	INTRON	LRBA	ENSG00000198589.14	ENST00000357115.9:ENST00000651943.2:ENST00000510413.5:ENST00000651035.1:ENST00000507224.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	33	2	4.526	4.6096	4.6932	0.00753088	0.00699701	0.0754576	0.074841
chr5	146228445	146228545	2514365	0	+	0.5	(0.476,0.515]	chr5	240165	1	SS3_PROX	SS3_PROX:INTRON	ENSG00000275740:RBM27	ENSG00000275740.1:ENSG00000091009.8	ENST00000506502.2:ENST00000265271.7	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.526	4.6096	4.6932	0.00753088	0.00699701	0.0754576	0.074841
chr6	150222854	150222954	2997575	0	+	0.49	(0.476,0.515]	chr6	280455	56	INTRON	INTRON	PPP1R14C	ENSG00000198729.5	ENST00000361131.5	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.526	4.6096	4.6932	0.00753088	0.00699701	0.0754576	0.074841
chr8	56214237	56214332	3755724	0	+	0.484211	(0.476,0.515]	chr8	349333	15	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	CHCHD7	ENSG00000170791.18	ENST00000521831.5:ENST00000303759.3:ENST00000355315.8:ENST00000522166.1:ENST00000521982.5:ENST00000523667.5:ENST00000523532.5:ENST00000517933.5:ENST00000517636.5:ENST00000522366.5:ENST00000523975.5:ENST00000518801.5:ENST00000396723.9:ENST00000523061.5:ENST00000521524.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	33	2	4.526	4.6096	4.6932	0.00753088	0.00699701	0.0754576	0.074841
chr9	132983292	132983391	4218988	0	+	0.484848	(0.476,0.515]	chr9	387083	41	INTRON	INTRON	GFI1B	ENSG00000165702.15	ENST00000339463.7:ENST00000636137.1:ENST00000372122.4:ENST00000372123.5	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.526	4.6096	4.6932	0.00753088	0.00699701	0.0754576	0.074841
chr3	37012884	37012979	1395347	0	+	0.368421	(0.35,0.378]	chr3	146220	4	INTRON	INTRON	MLH1	ENSG00000076242.16	ENST00000536378.5:ENST00000673899.1:ENST00000674111.1:ENST00000673972.1:ENST00000457004.5:ENST00000673713.1:ENST00000231790.8:ENST00000673715.1:ENST00000432299.6:ENST00000673897.1:ENST00000442249.6:ENST00000673947.1:ENST00000456676.6:ENST00000673673.1:ENST00000674019.1:ENST00000458205.6:ENST00000413212.2:ENST00000447829.6:ENST00000673990.1:ENST00000455445.6:ENST00000435176.5:ENST00000539477.6:ENST00000441265.6:ENST00000674107.1:ENST00000458009.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	73	2	3.90724	4.60891	5.31058	0.00160599	1.41179e-4	0.0364977	0.0102551
chr17	31941183	31941282	6595718	0	+	0.393939	(0.378,0.408]	chr17	641548	3	INTRON	INTRON	SUZ12	ENSG00000178691.11	ENST00000322652.10:ENST00000580398.1	protein_coding	protein_coding	protein_coding	protein_coding	1	75	2	3.47322	4.6088	5.74438	0.00147803	5.15539e-5	0.0348908	0.00585477
chr10	24601230	24601330	4580699	0	-	0.38	(0.378,0.408]	chr10	422115	3	SS3_PROX	SS3_PROX:INTRON	ARHGAP21	ENSG00000107863.20	ENST00000612832.4:ENST00000396432.7:ENST00000680286.1:ENST00000486374.5:ENST00000376410.7:ENST00000638156.1:ENST00000636789.1:ENST00000446003.5:ENST00000493154.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	35	2	4.21226	4.608425	5.00459	0.0177403	0.00371142	0.11319	0.0535094
chr12	111591254	111591354	5413152	0	-	0.39	(0.378,0.408]	chr12	516941	265	INTRON	INTRON	ATXN2	ENSG00000204842.18	ENST00000642389.2:ENST00000608853.5:ENST00000672613.1:ENST00000673436.1:ENST00000643669.2:ENST00000616825.4:ENST00000389153.10:ENST00000550104.5:ENST00000483311.6:ENST00000672335.1:ENST00000673557.1:ENST00000673283.1:ENST00000673449.1:ENST00000535949.5:ENST00000542287.6:ENST00000644883.1:ENST00000647305.1:ENST00000671792.1:ENST00000392645.6:ENST00000672105.1:ENST00000549455.1:ENST00000548492.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	35	2	4.21226	4.608425	5.00459	0.0177403	0.00371142	0.11319	0.0535094
chr1	61084006	61084105	127405	0	+	0.353535	(0.35,0.378]	chr1	14764	8	INTRON	INTRON	NFIA	ENSG00000162599.17	ENST00000371191.5:ENST00000664495.1:ENST00000476646.5:ENST00000407417.7:ENST00000479364.1:ENST00000371189.8:ENST00000670151.1:ENST00000664149.1:ENST00000662015.1:ENST00000403491.8:ENST00000371187.7:ENST00000485903.6:ENST00000371185.6:ENST00000371184.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	34	2	4.39303	4.6084	4.82377	0.0237246	0.00325499	0.118716	0.0524329
chr11	693208	693298	4889479	0	-	0.377778	(0.35,0.378]	chr11	457780	3	SS5_PROX	SS5_PROX:INTRON	DEAF1	ENSG00000177030.19	ENST00000382409.4:ENST00000685854.1:ENST00000683307.1:ENST00000528864.6:ENST00000690068.1:ENST00000692634.1:ENST00000687329.1:ENST00000686001.1:ENST00000689835.1:ENST00000530813.2:ENST00000693164.1:ENST00000529717.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	34	2	4.39303	4.6084	4.82377	0.0237246	0.00325499	0.118716	0.0524329
chr2	227502595	227502694	1025963	0	+	0.363636	(0.35,0.378]	chr2	109562	106	INTRON	INTRON	AGFG1	ENSG00000173744.18	ENST00000409979.6:ENST00000310078.13:ENST00000409315.5:ENST00000373671.7:ENST00000409171.5	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.39303	4.6084	4.82377	0.0237246	0.00325499	0.118716	0.0524329
chr15	42350550	42350642	6009518	0	+	0.467391	(0.44,0.476]	chr15	572117	7	INTRON	INTRON	GANC	ENSG00000214013.10	ENST00000318010.13:ENST00000567596.5:ENST00000566690.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	33	2	4.43377	4.60835	4.78293	0.0162803	0.00292033	0.101453	0.0494641
chr5	19070685	19070785	2569772	0	-	0.46	(0.44,0.476]	chr5	246210	320	INTRON	INTRON	ENSG00000249174	ENSG00000249174.1	ENST00000504827.1	lncRNA	lncRNA	lncRNA	lncRNA	0	33	2	4.43377	4.60835	4.78293	0.0162803	0.00292033	0.101453	0.0494641
chr12	113370001	113370099	5232458	0	+	0.459184	(0.44,0.476]	chr12	496278	4	INTRON	INTRON	PLBD2	ENSG00000151176.8	ENST00000545182.6:ENST00000280800.5:ENST00000548997.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	33	2	4.53034	4.60799	4.68564	0.00816201	0.00672609	0.0766625	0.0738715
chr16	75327218	75327318	6528225	0	-	0.45	(0.44,0.476]	chr16	632300	208	INTRON	INTRON	CFDP1	ENSG00000153774.9	ENST00000283882.4:ENST00000564793.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	33	2	4.53034	4.60799	4.68564	0.00816201	0.00672609	0.0766625	0.0738715
chr16	31895627	31895727	6342026	0	+	0.37	(0.35,0.378]	chr16	608570	50	INTRON	INTRON	ZNF267	ENSG00000185947.15	ENST00000300870.15:ENST00000394846.7:ENST00000566541.5:ENST00000561814.1:ENST00000562971.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	34	2	4.49626	4.607895	4.71953	0.0103314	0.00917582	0.0855292	0.0850389
chr3	155801431	155801531	1843952	0	-	0.36	(0.35,0.378]	chr3	185505	252	INTRON	INTRON	C3orf33	ENSG00000174928.16	ENST00000340171.7:ENST00000482061.6:ENST00000534941.2:ENST00000465810.1:ENST00000486435.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	34	2	4.49626	4.607895	4.71953	0.0103314	0.00917582	0.0855292	0.0850389
chrX	110108379	110108479	7701095	0	+	0.37	(0.35,0.378]	chrX	788144	258	INTRON	INTRON	TMEM164	ENSG00000157600.12	ENST00000372072.7:ENST00000372073.5:ENST00000372068.7:ENST00000288381.4:ENST00000461715.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	34	2	4.49626	4.607895	4.71953	0.0103314	0.00917582	0.0855292	0.0850389
chr13	95117300	95117400	5638013	0	-	0.48	(0.476,0.515]	chr13	537056	9	INTRON	INTRON	ABCC4	ENSG00000125257.16	ENST00000645237.2:ENST00000643051.1:ENST00000643842.1:ENST00000646439.1:ENST00000644880.1:ENST00000643816.1:ENST00000536256.3:ENST00000643556.1:ENST00000629385.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	69	2	3.85485	4.6074	5.35995	7.54256e-4	1.63076e-4	0.0251179	0.0109774
chrX	123867341	123867441	7716259	0	+	0.48	(0.476,0.515]	chrX	789403	64	INTRON	INTRON	XIAP	ENSG00000101966.13	ENST00000422098.5:ENST00000481776.5:ENST00000434753.7:ENST00000497906.5:ENST00000468691.5:ENST00000430625.1:ENST00000371199.8:ENST00000497640.1:ENST00000355640.3:ENST00000468503.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	69	2	3.85485	4.6074	5.35995	7.54256e-4	1.63076e-4	0.0251179	0.0109774
chr7	72950887	72950982	3553764	0	-	0.589474	(0.57,1]	chr7	330613	3	INTRON	INTRON	NSUN5P2	ENSG00000106133.18	ENST00000602348.5:ENST00000444583.6:ENST00000388955.8:ENST00000485741.6:ENST00000457352.4	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	6	194	2	4.32459	4.607195	4.8898	2.78322e-10	1.68524e-10	2.15055e-6	2.06889e-6
chr2	55231203	55231303	1122652	0	-	0.45	(0.44,0.476]	chr2	120299	26	INTRON	INTRON	CLHC1	ENSG00000162994.16	ENST00000401408.6:ENST00000428621.5:ENST00000494539.5:ENST00000407122.5:ENST00000406076.5:ENST00000487320.5:ENST00000466020.1:ENST00000451916.1:ENST00000464243.1:ENST00000463300.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	138	2	2.90834	4.60712	6.3059	1.76007e-4	1.74264e-6	0.01216	7.93825e-4
chr1	37501303	37501358	423924	0	-	0.236364	[0,0.28]	chr1	51242	1	SS5_PROX	SS5_PROX:PRIMIRNA:INTRON	MEAF6:MIR5581	ENSG00000163875.16:ENSG00000263675.1	ENST00000296214.10:ENST00000373075.6:ENST00000373074.5:ENST00000475828.5:ENST00000487788.5:ENST00000373073.8:ENST00000487792.5:ENST00000448519.2:ENST00000580821.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:processed_transcript:primary_miRNA	1	85	2	3.699	4.60694	5.51488	0.00314116	6.64135e-4	0.0500389	0.0233423
chr16	107547	107646	6425447	0	-	0.333333	(0.32,0.35]	chr16	617341	67	INTRON	INTRON	NPRL3	ENSG00000103148.17	ENST00000611875.5:ENST00000622194.4:ENST00000621703.4:ENST00000399953.7:ENST00000473674.5:ENST00000457916.5:ENST00000483663.5:ENST00000422814.5:ENST00000468260.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	183	2	2.24874	4.606865	6.96499	0.00215831	8.4008e-8	0.0417866	1.25006e-4
chr11	66136849	66136949	4808537	0	+	0.54	(0.515,0.57]	chr11	447345	154	INTRON	INTRON	PACS1	ENSG00000175115.13	ENST00000320580.9:ENST00000527224.1:ENST00000533756.5:ENST00000527380.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	33	2	4.17037	4.606310000000001	5.04225	0.0139194	0.00131841	0.10247	0.0331539
chr2	135596001	135596101	874601	0	+	0.57	(0.515,0.57]	chr2	97895	91	INTRON	INTRON	R3HDM1	ENSG00000048991.17	ENST00000483021.5:ENST00000463230.5:ENST00000683871.1:ENST00000409478.5:ENST00000264160.8:ENST00000438014.5:ENST00000488035.5:ENST00000410054.5:ENST00000628915.2:ENST00000436436.5:ENST00000409606.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	33	2	4.17037	4.606310000000001	5.04225	0.0139194	0.00131841	0.10247	0.0331539
chr2	131113031	131113131	864473	0	+	0.44	(0.408,0.44]	chr2	97119	46	INTRON	INTRON	PLEKHB2	ENSG00000115762.17	ENST00000403716.5:ENST00000439822.6:ENST00000409158.5:ENST00000234115.10:ENST00000628582.2:ENST00000482225.1:ENST00000693505.1:ENST00000438882.6:ENST00000404460.5:ENST00000409612.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	91	2	3.12458	4.606115	6.08765	4.61817e-4	3.51008e-5	0.0194611	0.00499276
chr3	141885353	141885453	1526162	0	+	0.37	(0.35,0.378]	chr3	159005	74	INTRON	INTRON	ATP1B3	ENSG00000069849.11	ENST00000475483.5:ENST00000465172.5:ENST00000286371.8:ENST00000466678.5:ENST00000462082.1:ENST00000495216.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	72	2	3.80701	4.605729999999999	5.40445	0.00114224	2.34133e-4	0.0307966	0.0135358
chr7	2358613	2358712	3269658	0	+	0.484848	(0.476,0.515]	chr7	303797	28	INTRON	INTRON	EIF3B	ENSG00000106263.19	ENST00000431643.5:ENST00000360876.9:ENST00000413917.5:ENST00000397011.2	protein_coding	protein_coding	protein_coding	protein_coding	1	75	2	3.86502	4.605455	5.34589	3.224e-4	2.2858e-4	0.0159645	0.0138641
chr10	21139947	21140047	4574656	0	-	0.41	(0.408,0.44]	chr10	421839	131	INTRON	INTRON	NEBL	ENSG00000078114.19	ENST00000675702.1:ENST00000675700.1:ENST00000417816.2:ENST00000675747.1:ENST00000676018.1:ENST00000529198.1:ENST00000649437.1:ENST00000534331.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	33	2	4.42713	4.6053049999999995	4.78348	0.0173083	0.00290352	0.104099	0.0494641
chr10	121889593	121889693	4709442	0	-	0.43	(0.408,0.44]	chr10	434486	7	UTR3	UTR3:EXON_MRNA:INTRON	ATE1	ENSG00000107669.19	ENST00000369043.8:ENST00000224652.12:ENST00000693411.1:ENST00000540606.7:ENST00000690773.1:ENST00000686894.1:ENST00000685890.1:ENST00000687583.1:ENST00000693276.1:ENST00000686451.1:ENST00000687319.1:ENST00000686786.1:ENST00000684967.1:ENST00000689057.1:ENST00000692329.1:ENST00000689393.1:ENST00000689571.1:ENST00000692718.1:ENST00000688526.1:ENST00000692034.1:ENST00000690128.1:ENST00000690748.1:ENST00000692491.1:ENST00000369040.9:ENST00000691087.1:ENST00000691830.1:ENST00000687089.1:ENST00000693486.1:ENST00000690355.1:ENST00000691765.1:ENST00000691226.1:ENST00000692743.1:ENST00000691108.1:ENST00000689297.1:ENST00000685427.1:ENST00000692513.1:ENST00000688057.1:ENST00000684876.1:ENST00000687607.1:ENST00000688424.1:ENST00000692255.1:ENST00000690706.1:ENST00000693395.1:ENST00000690324.1:ENST00000692278.1:ENST00000687144.1:ENST00000691573.1:ENST00000685289.1:ENST00000686907.1:ENST00000687206.1:ENST00000685007.1:ENST00000686811.1:ENST00000691041.1:ENST00000423243.7:ENST00000689834.1:ENST00000689455.1:ENST00000693655.1:ENST00000690488.1:ENST00000687458.1:ENST00000685072.1:ENST00000692087.1:ENST00000690415.1:ENST00000687935.1:ENST00000687251.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	33	2	4.42713	4.6053049999999995	4.78348	0.0173083	0.00290352	0.104099	0.0494641
chr14	96331549	96331637	5966037	0	-	0.409091	(0.408,0.44]	chr14	566813	3	CDS	CDS:EXON_MRNA	ATG2B	ENSG00000066739.12	ENST00000359933.6	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.42713	4.6053049999999995	4.78348	0.0173083	0.00290352	0.104099	0.0494641
chr5	177324178	177324278	2777324	0	-	0.43	(0.408,0.44]	chr5	261667	60	INTRON	INTRON	LMAN2	ENSG00000169223.16	ENST00000694903.1	protein_coding	processed_transcript	protein_coding	processed_transcript	0	33	2	4.42713	4.6053049999999995	4.78348	0.0173083	0.00290352	0.104099	0.0494641
chr6	1928302	1928402	3044016	0	-	0.41	(0.408,0.44]	chr6	283417	1854	INTRON	INTRON	GMDS	ENSG00000112699.11	ENST00000380815.5:ENST00000530927.5:ENST00000380805.6:ENST00000531690.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	33	2	4.42713	4.6053049999999995	4.78348	0.0173083	0.00290352	0.104099	0.0494641
chrX	3828223	3828320	7746862	0	-	0.546392	(0.515,0.57]	chrX	793082	12	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	ENSG00000285756	ENSG00000285756.2	ENST00000648217.1:ENST00000425492.5:ENST00000662024.1:ENST00000490920.2:ENST00000475317.5:ENST00000483854.6:ENST00000671495.1:ENST00000486571.1:ENST00000671583.1	lncRNA	lncRNA	lncRNA	lncRNA	1	67	2	3.84583	4.605115	5.3644	1.82082e-4	1.52226e-4	0.0122264	0.0106137
chr1	35902936	35903036	70852	0	+	0.33	(0.32,0.35]	chr1	9081	2	INTRON	INTRON	AGO1	ENSG00000092847.13	ENST00000373206.5:ENST00000373204.6:ENST00000674426.1:ENST00000674304.1:ENST00000635259.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	77	2	3.18392	4.60498	6.02604	0.00379806	1.37226e-4	0.0562562	0.0106749
chr11	33879424	33879524	4941917	0	-	0.42	(0.408,0.44]	chr11	463055	90	INTRON	INTRON	LMO2	ENSG00000135363.12	ENST00000257818.3	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.53088	4.60491	4.67894	0.0087648	0.00669275	0.0788605	0.0738715
chr12	120807714	120807814	5434938	0	-	0.41	(0.408,0.44]	chr12	519651	158	INTRON	INTRON	SPPL3	ENSG00000157837.16	ENST00000353487.7:ENST00000536996.5:ENST00000543608.5:ENST00000543854.5:ENST00000543181.5:ENST00000540091.1	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.53088	4.60491	4.67894	0.0087648	0.00669275	0.0788605	0.0738715
chr17	82841193	82841293	6695107	0	+	0.41	(0.408,0.44]	chr17	654907	101	INTRON	INTRON	TBCD	ENSG00000141556.22	ENST00000682479.1:ENST00000682722.1:ENST00000684464.1:ENST00000684544.1:ENST00000681983.1:ENST00000684361.1:ENST00000683184.1:ENST00000683282.1:ENST00000684408.1:ENST00000355528.9:ENST00000683444.1:ENST00000684776.1:ENST00000683041.1:ENST00000684760.1:ENST00000684349.1:ENST00000682213.1:ENST00000683009.1:ENST00000682921.1:ENST00000539345.6:ENST00000684000.1:ENST00000684188.1:ENST00000684429.1:ENST00000682610.1:ENST00000683821.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	33	2	4.53088	4.60491	4.67894	0.0087648	0.00669275	0.0788605	0.0738715
chr3	48035607	48035707	1686967	0	-	0.44	(0.408,0.44]	chr3	172280	193	INTRON	INTRON	MAP4	ENSG00000047849.22	ENST00000395734.7:ENST00000426837.6:ENST00000360240.10:ENST00000423088.5:ENST00000439356.2:ENST00000468075.2	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.53088	4.60491	4.67894	0.0087648	0.00669275	0.0788605	0.0738715
chr5	65542301	65542401	2634079	0	-	0.43	(0.408,0.44]	chr5	250169	1	SS5_PROX	SS5_PROX:INTRON	CENPK	ENSG00000123219.13	ENST00000514814.5:ENST00000396679.6:ENST00000242872.7:ENST00000508421.5:ENST00000510693.5:ENST00000506282.6:ENST00000511841.5:ENST00000505960.5:ENST00000509397.5:ENST00000515497.5:ENST00000515873.5:ENST00000510768.5:ENST00000502997.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	33	2	4.53088	4.60491	4.67894	0.0087648	0.00669275	0.0788605	0.0738715
chr6	20586847	20586947	2828909	0	+	0.43	(0.408,0.44]	chr6	265649	273	INTRON	INTRON	CDKAL1	ENSG00000145996.11	ENST00000274695.8:ENST00000378610.1	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.53088	4.60491	4.67894	0.0087648	0.00669275	0.0788605	0.0738715
chr21	33528684	33528764	7441250	0	-	0.2	[0,0.28]	chr21	759454	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GART	ENSG00000159131.17	ENST00000381839.7:ENST00000381831.7:ENST00000424203.5:ENST00000381815.9:ENST00000467575.1:ENST00000361093.9:ENST00000366093.6:ENST00000466882.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	84	2	3.41114	4.60489	5.79864	0.00211753	0.00125481	0.0425644	0.0323608
chr13	79405303	79405403	5626400	0	-	0.37	(0.35,0.378]	chr13	536668	2	SS5_PROX	SS5_PROX:INTRON	RBM26	ENSG00000139746.16	ENST00000438737.3:ENST00000438724.5:ENST00000622611.4:ENST00000267229.11:ENST00000472143.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	116	2	3.18643	4.604765	6.0231	8.75017e-5	7.78029e-5	0.00840733	0.00735438
chr10	27171771	27171865	4413193	0	+	0.244681	[0,0.28]	chr10	407015	3	INTRON	INTRON	MASTL	ENSG00000120539.15	ENST00000375946.8:ENST00000375940.9:ENST00000342386.10:ENST00000477034.2	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	4.29536	4.604749999999999	4.91414	0.0590175	0.0064519	0.167915	0.0730725
chr21	33466309	33466409	7440841	0	-	0.19	[0,0.28]	chr21	759356	5	INTRON	INTRON	TMEM50B	ENSG00000142188.17	ENST00000420455.5:ENST00000542230.7:ENST00000441128.5:ENST00000442441.5:ENST00000474272.1:ENST00000432504.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	37	2	4.29536	4.604749999999999	4.91414	0.0590175	0.0064519	0.167915	0.0730725
chr5	41787919	41788019	2611865	0	-	0.28	[0,0.28]	chr5	248318	254	INTRON	INTRON	OXCT1	ENSG00000083720.13	ENST00000196371.10:ENST00000512084.5:ENST00000510634.5:ENST00000509987.1:ENST00000508557.5:ENST00000513081.5:ENST00000514723.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	37	2	4.29536	4.604749999999999	4.91414	0.0590175	0.0064519	0.167915	0.0730725
chr8	92832439	92832539	3990430	0	-	0.26	[0,0.28]	chr8	365358	460	INTRON	INTRON	FLJ46284	ENSG00000248858.7	ENST00000504861.2	lncRNA	lncRNA	lncRNA	lncRNA	0	37	2	4.29536	4.604749999999999	4.91414	0.0590175	0.0064519	0.167915	0.0730725
chr9	136224612	136224686	4373710	0	-	0.243243	[0,0.28]	chr9	402659	1	SS5_PROX	SS5_PROX:INTRON	QSOX2	ENSG00000165661.17	ENST00000358701.10:ENST00000455222.1	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	4.29536	4.604749999999999	4.91414	0.0590175	0.0064519	0.167915	0.0730725
chr1	16304902	16305002	382141	0	-	0.41	(0.408,0.44]	chr1	44874	96	INTRON	INTRON	FBXO42	ENSG00000037637.11	ENST00000375592.8:ENST00000478089.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	74	2	3.20034	4.60469	6.00904	0.00398025	1.03233e-5	0.0549214	0.00235018
chr1	151202771	151202870	224911	0	+	0.50505	(0.476,0.515]	chr1	25634	32	INTRON	INTRON	PIP5K1A	ENSG00000143398.20	ENST00000447555.5:ENST00000349792.9:ENST00000368888.9:ENST00000409426.5:ENST00000368890.8:ENST00000441902.6:ENST00000424999.1:ENST00000454769.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	72	2	3.45711	4.604570000000001	5.75203	0.00140905	4.51048e-5	0.0340865	0.0054649
chr20	36045911	36046009	7336632	0	-	0.357143	(0.35,0.378]	chr20	747533	4	EXON_LNCRNA	EXON_LNCRNA	NORAD	ENSG00000260032.2	ENST00000565493.2	lncRNA	lncRNA	lncRNA	lncRNA	3	217	2	4.57804	4.604475	4.63091	5.94706e-6	5.63017e-8	0.00183483	1.02398e-4
chr7	150331425	150331524	3447003	0	+	0.393939	(0.378,0.408]	chr7	321727	29	EXON_LNCRNA	EXON_LNCRNA:INTRON	ZBED6CL:LRRC61	ENSG00000188707.7:ENSG00000127399.15	ENST00000343855.6:ENST00000323078.7:ENST00000493307.1:ENST00000359623.9	protein_coding	protein_coding	protein_coding:transcribed_unitary_pseudogene	protein_coding:processed_transcript	12	720	2	4.17982	4.60413	5.02844	3.06513e-10	1.39379e-10	3.17503e-6	1.29974e-6
chr10	87782981	87783080	4662224	0	-	0.252525	[0,0.28]	chr10	429580	39	INTRON	INTRON	ATAD1	ENSG00000138138.14	ENST00000680024.1:ENST00000308448.11:ENST00000681308.1:ENST00000328142.3:ENST00000681602.1:ENST00000680388.1:ENST00000681629.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	37	2	4.38376	4.604044999999999	4.82433	0.0258536	0.0200334	0.133676	0.109608
chr15	72526829	72526929	6059687	0	+	0.23	[0,0.28]	chr15	576864	83	INTRON	INTRON	ARIH1	ENSG00000166233.15	ENST00000379887.9:ENST00000570085.5:ENST00000564062.1:ENST00000567762.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	37	2	4.38376	4.604044999999999	4.82433	0.0258536	0.0200334	0.133676	0.109608
chr4	55540933	55541031	2149850	0	-	0.234694	[0,0.28]	chr4	211547	2	INTRON	INTRON	CLOCK	ENSG00000134852.15	ENST00000513440.6:ENST00000381322.5:ENST00000435527.6:ENST00000506923.5:ENST00000509151.5:ENST00000513033.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	37	2	4.38376	4.604044999999999	4.82433	0.0258536	0.0200334	0.133676	0.109608
chr5	34936266	34936366	2337428	0	+	0.28	[0,0.28]	chr5	225741	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	DNAJC21	ENSG00000168724.17	ENST00000648817.1:ENST00000382021.2:ENST00000642851.1:ENST00000642675.1:ENST00000644357.1:ENST00000642285.1:ENST00000646714.1:ENST00000514237.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	37	2	4.38376	4.604044999999999	4.82433	0.0258536	0.0200334	0.133676	0.109608
chr17	61833638	61833738	6808635	0	-	0.39	(0.378,0.408]	chr17	672605	245	INTRON	INTRON	BRIP1	ENSG00000136492.10	ENST00000259008.7:ENST00000682755.1:ENST00000682453.1:ENST00000683039.1:ENST00000682989.1:ENST00000682589.1:ENST00000683235.1:ENST00000682477.1:ENST00000684584.1:ENST00000577598.5:ENST00000682066.1:ENST00000584322.2:ENST00000683381.1:ENST00000579028.2:ENST00000682611.1:ENST00000683692.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	72	2	3.22599	4.603965	5.98194	0.00288652	7.66211e-5	0.0494641	0.00781006
chr12	112057908	112058006	5414901	0	-	0.489796	(0.476,0.515]	chr12	517177	30	INTRON	INTRON	NAA25	ENSG00000111300.10	ENST00000261745.9:ENST00000552527.5:ENST00000549711.5:ENST00000551858.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	68	2	3.66565	4.6038749999999995	5.5421	4.18031e-4	3.56777e-4	0.0182827	0.0175154
chr15	29743778	29743877	6124622	0	-	0.30303	(0.28,0.32]	chr15	583536	6	INTRON	INTRON	TJP1	ENSG00000104067.17	ENST00000346128.10:ENST00000614355.5:ENST00000400011.6:ENST00000356107.11:ENST00000677774.1:ENST00000545208.6	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.2432	4.603870000000001	4.96454	0.0479043	0.00344078	0.153019	0.0539802
chr5	66023634	66023719	2371828	0	+	0.305882	(0.28,0.32]	chr5	228533	3	SS5_PROX	SS5_PROX:INTRON	ERBIN	ENSG00000112851.15	ENST00000380943.6:ENST00000416865.6:ENST00000380935.5:ENST00000284037.10:ENST00000380938.6:ENST00000511297.5:ENST00000506030.5:ENST00000508515.1:ENST00000507128.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	36	2	4.2432	4.603870000000001	4.96454	0.0479043	0.00344078	0.153019	0.0539802
chr22	19493528	19493627	7476972	0	+	0.515152	(0.476,0.515]	chr22	762407	92	INTRON	INTRON	CDC45	ENSG00000093009.11	ENST00000407835.6:ENST00000437685.6:ENST00000483431.5:ENST00000438587.6:ENST00000672837.1:ENST00000263201.7:ENST00000404724.7:ENST00000487669.5:ENST00000428937.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	96	2	2.72507	4.60385	6.48263	0.0029369	3.17823e-6	0.0496505	0.00127469
chr16	47507476	47507576	6343765	0	+	0.33	(0.32,0.35]	chr16	608867	40	INTRON	INTRON	PHKB	ENSG00000102893.17	ENST00000566037.6:ENST00000566044.5:ENST00000299167.12:ENST00000696809.1:ENST00000323584.10:ENST00000565424.2:ENST00000567402.5:ENST00000563376.5:ENST00000570047.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	35	2	4.273	4.603624999999999	4.93425	0.0368357	0.00281048	0.138959	0.0488779
chr6	132785370	132785468	3222690	0	-	0.346939	(0.32,0.35]	chr6	299624	9	INTRON	INTRON	SLC18B1	ENSG00000146409.12	ENST00000275227.9:ENST00000647932.1:ENST00000650278.1:ENST00000650136.1:ENST00000650298.1:ENST00000367918.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	35	2	4.273	4.603624999999999	4.93425	0.0368357	0.00281048	0.138959	0.0488779
chr7	136254210	136254310	3432797	0	+	0.34	(0.32,0.35]	chr7	319921	106	INTRON	INTRON	ENSG00000232053	ENSG00000232053.7	ENST00000657456.1:ENST00000668062.1:ENST00000668668.1:ENST00000445293.6:ENST00000435996.1	lncRNA	lncRNA	lncRNA	lncRNA	0	35	2	4.273	4.603624999999999	4.93425	0.0368357	0.00281048	0.138959	0.0488779
chr9	112065519	112065619	4315669	0	-	0.34	(0.32,0.35]	chr9	396912	21	INTRON	INTRON	SUSD1	ENSG00000106868.17	ENST00000374270.8:ENST00000374263.7:ENST00000355396.7:ENST00000374264.6	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.273	4.603624999999999	4.93425	0.0368357	0.00281048	0.138959	0.0488779
chr19	40452875	40452973	7184451	0	-	0.418367	(0.408,0.44]	chr19	726746	10	INTRON	INTRON	BLVRB	ENSG00000090013.11	ENST00000643519.1:ENST00000263368.9:ENST00000595483.5:ENST00000643596.1:ENST00000601346.5:ENST00000597870.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	68	2	3.67886	4.60322	5.52758	4.54953e-4	3.86173e-4	0.0196892	0.017761
chr10	74283594	74283694	4457095	0	+	0.29	(0.28,0.32]	chr10	411553	402	INTRON	INTRON	ADK	ENSG00000156110.15	ENST00000672429.1:ENST00000539909.6:ENST00000286621.7:ENST00000673352.1:ENST00000673310.1:ENST00000672920.1:ENST00000672394.1:ENST00000372734.5:ENST00000673027.1:ENST00000541550.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	36	2	4.33863	4.60297	4.86731	0.0207276	0.0116253	0.122348	0.0889104
chr3	38350708	38350807	1399514	0	+	0.282828	(0.28,0.32]	chr3	146778	17	INTRON	INTRON	XYLB	ENSG00000093217.11	ENST00000427323.5:ENST00000207870.8:ENST00000650590.1:ENST00000424034.5:ENST00000649234.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	36	2	4.33863	4.60297	4.86731	0.0207276	0.0116253	0.122348	0.0889104
chr7	124856489	124856587	3633024	0	-	0.336735	(0.32,0.35]	chr7	337662	30	INTRON	INTRON	POT1	ENSG00000128513.16	ENST00000430927.6:ENST00000357628.8:ENST00000393329.5:ENST00000653274.1:ENST00000661898.1:ENST00000664330.1:ENST00000657892.1:ENST00000662531.1:ENST00000653241.1:ENST00000653892.1:ENST00000664366.1:ENST00000655761.1:ENST00000668382.1:ENST00000654766.1:ENST00000657333.1:ENST00000653819.1:ENST00000609106.5:ENST00000607932.5:ENST00000608057.5:ENST00000446993.6:ENST00000610141.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	35	2	4.37269	4.60278	4.83287	0.0154102	0.0095071	0.108569	0.0817766
chr7	156954598	156954698	3453737	0	+	0.57	(0.515,0.57]	chr7	322843	3	SS5_PROX	SS5_PROX:INTRON	NOM1	ENSG00000146909.8	ENST00000275820.4:ENST00000460332.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	34	2	4.04086	4.602495	5.16413	0.0197045	8.14815e-4	0.120063	0.0263656
chr15	64349072	64349171	6204761	0	-	0.454545	(0.44,0.476]	chr15	591778	8	INTRON	INTRON	CSNK1G1:ENSG00000259316	ENSG00000169118.18:ENSG00000259316.12	ENST00000303052.13:ENST00000607537.6:ENST00000634654.1:ENST00000634811.1:ENST00000634251.1:ENST00000634847.3:ENST00000635529.1:ENST00000634318.1:ENST00000635160.1:ENST00000635704.1:ENST00000634529.1:ENST00000635511.1:ENST00000635605.1:ENST00000635593.1:ENST00000634259.2:ENST00000560278.2:ENST00000635413.1:ENST00000634538.1:ENST00000635320.1:ENST00000558783.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	69	2	3.36231	4.60189	5.84147	0.00161678	1.03947e-4	0.0369204	0.00915599
chr13	39036220	39036315	5576193	0	-	0.231579	[0,0.28]	chr13	533093	17	INTRON	INTRON	PROSER1	ENSG00000120685.20	ENST00000352251.8:ENST00000625998.2:ENST00000418503.1:ENST00000602534.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	85	2	3.72771	4.601425	5.47514	0.00354561	5.87492e-4	0.0529186	0.0220073
chr19	3466141	3466241	7000638	0	+	0.44	(0.408,0.44]	chr19	694235	35	UTR3	UTR3:EXON_MRNA	NFIC	ENSG00000141905.19	ENST00000641145.1:ENST00000589123.5:ENST00000443272.3	protein_coding	protein_coding	protein_coding	protein_coding	1	68	2	3.55215	4.601325	5.6505	7.01039e-4	2.70553e-4	0.0241881	0.0150813
chr3	139358648	139358743	1831832	0	-	0.410526	(0.408,0.44]	chr3	184085	5	EXON_MRNA	EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	COPB2	ENSG00000184432.11	ENST00000503326.6:ENST00000677882.1:ENST00000677601.1:ENST00000677309.1:ENST00000677073.1:ENST00000502734.2:ENST00000676700.1:ENST00000512242.6:ENST00000507777.6:ENST00000514508.2:ENST00000333188.10:ENST00000510181.6:ENST00000512309.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	101	2	2.64944	4.60118	6.55292	0.00481947	3.44175e-7	0.060277	2.98079e-4
chr1	32625520	32625619	415458	0	-	0.383838	(0.378,0.408]	chr1	50106	32	INTRON	INTRON	ZBTB8OS	ENSG00000176261.16	ENST00000341885.6:ENST00000468695.6:ENST00000492007.6:ENST00000373506.8:ENST00000436661.6:ENST00000473294.7:ENST00000373501.6:ENST00000498691.5:ENST00000467652.5:ENST00000476493.6:ENST00000465588.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	34	2	4.21563	4.60075	4.98587	0.0315429	0.00152268	0.13151	0.0360297
chr14	99505505	99505602	5812725	0	+	0.381443	(0.378,0.408]	chr14	551173	15	INTRON	INTRON	CCNK	ENSG00000090061.17	ENST00000389879.9:ENST00000555049.5:ENST00000553865.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	34	2	4.21563	4.60075	4.98587	0.0315429	0.00152268	0.13151	0.0360297
chr20	21235611	21235710	7248024	0	+	0.393939	(0.378,0.408]	chr20	735874	24	INTRON	INTRON	KIZ	ENSG00000088970.16	ENST00000619574.4:ENST00000620891.4:ENST00000611685.4:ENST00000616848.4:ENST00000619189.5:ENST00000616679.4:ENST00000619179.4:ENST00000621366.1:ENST00000451772.5:ENST00000419359.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	34	2	4.21563	4.60075	4.98587	0.0315429	0.00152268	0.13151	0.0360297
chr3	88138801	88138899	1457833	0	+	0.387755	(0.378,0.408]	chr3	153204	2	CDS	CDS:EXON_MRNA	ZNF654	ENSG00000175105.8	ENST00000636215.2	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.21563	4.60075	4.98587	0.0315429	0.00152268	0.13151	0.0360297
chr9	120457849	120457949	4332638	0	-	0.39	(0.378,0.408]	chr9	398023	36	INTRON	INTRON	CDK5RAP2	ENSG00000136861.19	ENST00000349780.9:ENST00000360190.8:ENST00000687279.1:ENST00000687633.1:ENST00000684780.1:ENST00000687311.1:ENST00000479584.2:ENST00000690814.1:ENST00000686842.1:ENST00000693714.1:ENST00000693386.1:ENST00000692746.1:ENST00000686376.1:ENST00000692155.1:ENST00000690646.1:ENST00000693433.1:ENST00000688923.1:ENST00000473282.6:ENST00000480112.5:ENST00000685866.1:ENST00000689688.1:ENST00000416449.6:ENST00000691504.1:ENST00000360822.8:ENST00000693728.1:ENST00000483412.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	34	2	4.21563	4.60075	4.98587	0.0315429	0.00152268	0.13151	0.0360297
chr7	151500172	151500272	3674728	0	-	0.34	(0.32,0.35]	chr7	341207	16	INTRON	INTRON	RHEB	ENSG00000106615.10	ENST00000262187.10:ENST00000472642.5:ENST00000478470.5:ENST00000496004.5:ENST00000470370.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	99	2	3.11857	4.60073	6.08289	5.76454e-4	1.06767e-4	0.0218153	0.00924854
chr2	148016114	148016214	1242731	0	-	0.36	(0.35,0.378]	chr2	131884	337	INTRON	INTRON	ORC4	ENSG00000115947.14	ENST00000392857.10:ENST00000264169.6:ENST00000536575.5:ENST00000535373.5:ENST00000540442.5:ENST00000461711.5:ENST00000490200.5:ENST00000416719.5:ENST00000457954.5:ENST00000440042.1:ENST00000495601.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	114	2	2.88378	4.60021	6.31664	4.08693e-4	2.12364e-5	0.0181306	0.00377197
chr1	10570564	10570664	23938	0	+	0.5	(0.476,0.515]	chr1	2518	339	INTRON	INTRON	PEX14	ENSG00000142655.13	ENST00000356607.9:ENST00000491661.2	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.34648	4.600135	4.85379	0.0193566	0.00234214	0.108861	0.0442989
chr1	246219524	246219624	677830	0	-	0.51	(0.476,0.515]	chr1	79733	259	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000453676.5:ENST00000462422.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	33	2	4.34648	4.600135	4.85379	0.0193566	0.00234214	0.108861	0.0442989
chr11	62863148	62863248	4799398	0	+	0.49	(0.476,0.515]	chr11	444781	63	INTRON	INTRON	SLC3A2	ENSG00000168003.18	ENST00000680729.1:ENST00000680002.1:ENST00000681467.1:ENST00000377890.6:ENST00000538084.2:ENST00000681569.1:ENST00000680725.1:ENST00000377891.6:ENST00000377889.6:ENST00000681215.1:ENST00000535296.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	33	2	4.34648	4.600135	4.85379	0.0193566	0.00234214	0.108861	0.0442989
chr11	71993830	71993927	4824187	0	+	0.494845	(0.476,0.515]	chr11	449954	28	INTRON	INTRON	RNF121	ENSG00000137522.18	ENST00000530655.5:ENST00000533380.5:ENST00000393713.7:ENST00000361756.8:ENST00000490867.5:ENST00000526549.5:ENST00000525243.5:ENST00000530137.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	33	2	4.34648	4.600135	4.85379	0.0193566	0.00234214	0.108861	0.0442989
chr17	1381737	1381837	6699424	0	-	0.51	(0.476,0.515]	chr17	655552	116	INTRON	INTRON	YWHAE	ENSG00000108953.17	ENST00000264335.13:ENST00000571732.5:ENST00000573026.1:ENST00000573196.5:ENST00000575977.1:ENST00000469398.5:ENST00000486241.1:ENST00000489287.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	33	2	4.34648	4.600135	4.85379	0.0193566	0.00234214	0.108861	0.0442989
chr17	17267288	17267384	6736295	0	-	0.5	(0.476,0.515]	chr17	660982	20	INTRON	INTRON	COPS3	ENSG00000141030.13	ENST00000268717.10:ENST00000539941.6:ENST00000578317.5:ENST00000439936.6:ENST00000486810.5:ENST00000577210.5:ENST00000417352.5:ENST00000584216.5:ENST00000583160.5:ENST00000492672.5:ENST00000477299.5:ENST00000577246.5:ENST00000495640.1:ENST00000462236.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	33	2	4.34648	4.600135	4.85379	0.0193566	0.00234214	0.108861	0.0442989
chr17	46569859	46569959	6786634	0	-	0.5	(0.476,0.515]	chr17	669366	107	INTRON	INTRON	ARL17A	ENSG00000185829.18	ENST00000445552.6:ENST00000622488.6:ENST00000329240.10:ENST00000573185.5:ENST00000570550.5:ENST00000336125.6	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.34648	4.600135	4.85379	0.0193566	0.00234214	0.108861	0.0442989
chr5	146176152	146176251	2747349	0	-	0.515152	(0.476,0.515]	chr5	258893	30	INTRON	INTRON	LARS1	ENSG00000133706.19	ENST00000674174.1:ENST00000674170.1:ENST00000674479.1:ENST00000674309.1:ENST00000674218.1:ENST00000674467.1:ENST00000674290.1:ENST00000674447.1:ENST00000674270.1:ENST00000674383.1:ENST00000674191.1:ENST00000674158.1:ENST00000394434.7:ENST00000674398.1:ENST00000674277.1:ENST00000274562.13:ENST00000510191.5:ENST00000674310.1:ENST00000512412.2:ENST00000674417.1:ENST00000674450.1:ENST00000674412.1:ENST00000618084.2:ENST00000511505.5:ENST00000505223.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	33	2	4.34648	4.600135	4.85379	0.0193566	0.00234214	0.108861	0.0442989
chr9	136444082	136444161	4374613	0	-	0.481013	(0.476,0.515]	chr9	402947	1	SS3_PROX	SS3_PROX:INTRON	SEC16A	ENSG00000148396.19	ENST00000290037.10:ENST00000313050.11:ENST00000371706.8:ENST00000453963.5:ENST00000277537.10:ENST00000313084.9:ENST00000684901.1:ENST00000689049.1:ENST00000689439.1:ENST00000688461.1:ENST00000688052.1:ENST00000690691.1:ENST00000431893.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	33	2	4.34648	4.600135	4.85379	0.0193566	0.00234214	0.108861	0.0442989
chr7	106274845	106274945	3608507	0	-	0.29	(0.28,0.32]	chr7	336534	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	NAMPT	ENSG00000105835.13	ENST00000681491.1:ENST00000222553.8:ENST00000681494.1:ENST00000680708.1:ENST00000681653.1:ENST00000681391.1:ENST00000680991.1:ENST00000680077.1:ENST00000681456.1:ENST00000680675.1:ENST00000681550.1:ENST00000680864.1:ENST00000680584.1:ENST00000680669.1:ENST00000424768.2:ENST00000681255.1:ENST00000679873.1:ENST00000679643.1:ENST00000681878.1:ENST00000489732.2:ENST00000679951.1:ENST00000680823.1:ENST00000680468.1:ENST00000681936.1:ENST00000680152.1:ENST00000681887.1:ENST00000680129.1:ENST00000680786.1:ENST00000681223.1:ENST00000679717.1:ENST00000484527.6:ENST00000354289.9:ENST00000491027.6:ENST00000393618.6:ENST00000486949.6:ENST00000489358.5:ENST00000441045.6:ENST00000417537.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	127	2	3.09361	4.600099999999999	6.10659	1.79432e-4	1.73268e-4	0.0120833	0.0116696
chr14	69713061	69713160	5776732	0	+	0.323232	(0.32,0.35]	chr14	547332	22	UTR3	UTR3:EXON_MRNA	SUSD6	ENSG00000100647.8	ENST00000342745.5	protein_coding	protein_coding	protein_coding	protein_coding	1	76	2	3.23331	4.600085	5.96686	0.00315414	1.77352e-4	0.0515261	0.0121697
chr20	32411394	32411494	7256357	0	+	0.53	(0.515,0.57]	chr20	737076	390	INTRON	INTRON	ASXL1	ENSG00000171456.21	ENST00000651418.1:ENST00000375687.10:ENST00000613218.4:ENST00000644587.1:ENST00000620121.4:ENST00000646985.1:ENST00000643168.1:ENST00000306058.9:ENST00000645688.1:ENST00000470145.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	32	2	4.20381	4.60008	4.99635	0.0189208	8.06602e-4	0.108861	0.0258804
chr9	127789927	127790023	4202123	0	+	0.416667	(0.408,0.44]	chr9	383811	5	UTR3	UTR3:EXON_MRNA	CDK9	ENSG00000136807.14	ENST00000373264.5	protein_coding	protein_coding	protein_coding	protein_coding	2	91	2	3.05533	4.59993	6.14453	6.50769e-4	2.6318e-5	0.0231135	0.00424204
chr4	39726238	39726338	1953273	0	+	0.44	(0.408,0.44]	chr4	195630	275	INTRON	INTRON	UBE2K	ENSG00000078140.14	ENST00000510934.5:ENST00000261427.10:ENST00000438068.6:ENST00000513231.5:ENST00000503368.5:ENST00000445950.2:ENST00000510719.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	240	2	3.75083	4.599825	5.44882	4.19582e-6	3.67498e-9	0.00148744	1.82057e-5
chr5	179661176	179661276	2560433	0	+	0.4	(0.378,0.408]	chr5	244833	23	INTRON	INTRON	ENSG00000250999	ENSG00000250999.2	ENST00000508188.2:ENST00000661598.1:ENST00000514793.1:ENST00000503428.1	lncRNA	lncRNA	lncRNA	lncRNA	0	34	2	4.32174	4.59968	4.87762	0.0132362	0.00553849	0.0999551	0.0648867
chr1	51717065	51717165	100394	0	+	0.49	(0.476,0.515]	chr1	13265	26	INTRON	INTRON	OSBPL9	ENSG00000117859.19	ENST00000371714.5:ENST00000428468.6:ENST00000447887.5:ENST00000495776.5:ENST00000435274.6:ENST00000453295.5:ENST00000489990.5:ENST00000484890.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	33	2	4.43093	4.599600000000001	4.76827	0.00931369	0.00600704	0.0855292	0.0674604
chr12	51158819	51158918	5325732	0	-	0.484848	(0.476,0.515]	chr12	507890	333	INTRON	INTRON	TFCP2	ENSG00000135457.11	ENST00000257915.10:ENST00000685804.1:ENST00000549867.5:ENST00000548115.5:ENST00000548108.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	33	2	4.43093	4.599600000000001	4.76827	0.00931369	0.00600704	0.0855292	0.0674604
chr17	81691108	81691205	6691088	0	+	0.494845	(0.476,0.515]	chr17	654065	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HGS	ENSG00000185359.14	ENST00000677161.1:ENST00000678096.1:ENST00000679191.1:ENST00000676546.1:ENST00000678387.1:ENST00000677109.1:ENST00000677484.1:ENST00000678115.1:ENST00000677243.1:ENST00000677044.1:ENST00000679336.1:ENST00000678196.1:ENST00000676462.1:ENST00000576498.5:ENST00000678105.1:ENST00000676478.1:ENST00000329138.9:ENST00000677225.1:ENST00000678866.1:ENST00000679275.1:ENST00000678541.1:ENST00000676729.1:ENST00000572392.2:ENST00000678846.1:ENST00000678658.1:ENST00000678893.1:ENST00000677818.1:ENST00000678313.1:ENST00000677402.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	33	2	4.43093	4.599600000000001	4.76827	0.00931369	0.00600704	0.0855292	0.0674604
chr2	63590402	63590497	795763	0	+	0.505263	(0.476,0.515]	chr2	88903	1	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	MDH1	ENSG00000014641.21	ENST00000544381.4:ENST00000485781.5:ENST00000409908.5:ENST00000233114.13:ENST00000539945.7:ENST00000442225.5:ENST00000409476.5:ENST00000485155.1:ENST00000436321.5:ENST00000462944.1:ENST00000454035.5:ENST00000472098.5:ENST00000421012.2:ENST00000432309.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	33	2	4.43093	4.599600000000001	4.76827	0.00931369	0.00600704	0.0855292	0.0674604
chr4	461696	461795	2092796	0	-	0.515152	(0.476,0.515]	chr4	206783	169	INTRON	INTRON	ABCA11P:ZNF721	ENSG00000251595.7:ENSG00000182903.16	ENST00000451020.6:ENST00000514396.5:ENST00000507854.1:ENST00000515578.5:ENST00000506646.5:ENST00000507078.1:ENST00000511833.3:ENST00000338977.5:ENST00000505900.1	protein_coding	protein_coding	protein_coding:transcribed_processed_pseudogene	protein_coding:nonsense_mediated_decay:processed_transcript	0	33	2	4.43093	4.599600000000001	4.76827	0.00931369	0.00600704	0.0855292	0.0674604
chr8	65618987	65619086	3959560	0	-	0.484848	(0.476,0.515]	chr8	363270	52	INTRON	INTRON	ARMC1	ENSG00000104442.10	ENST00000276569.8:ENST00000458464.3:ENST00000528721.5:ENST00000518908.5:ENST00000523384.1:ENST00000519352.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	33	2	4.43093	4.599600000000001	4.76827	0.00931369	0.00600704	0.0855292	0.0674604
chr9	125702484	125702583	4355179	0	-	0.484848	(0.476,0.515]	chr9	399738	57	INTRON	INTRON	MAPKAP1	ENSG00000119487.17	ENST00000373511.6:ENST00000394063.5:ENST00000373503.7:ENST00000265960.8:ENST00000350766.7:ENST00000394060.7:ENST00000427078.5:ENST00000373496.3:ENST00000433483.1	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.43093	4.599600000000001	4.76827	0.00931369	0.00600704	0.0855292	0.0674604
chr17	37244287	37244387	6761389	0	-	0.52	(0.515,0.57]	chr17	664828	3	SS5_PROX	SS5_PROX:INTRON	ACACA	ENSG00000278540.5	ENST00000616317.5:ENST00000614428.4:ENST00000612895.4:ENST00000617649.4:ENST00000613146.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	32	2	4.28921	4.599164999999999	4.90912	0.00990051	0.0021669	0.0877296	0.0417866
chr4	70925134	70925234	1970733	0	+	0.48	(0.476,0.515]	chr4	197571	222	INTRON	INTRON	MOB1B	ENSG00000173542.9	ENST00000502869.5:ENST00000509041.5:ENST00000309395.7:ENST00000396051.2:ENST00000511449.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	35	2	4.01777	4.59908	5.18039	0.0411361	6.58744e-4	0.1451	0.0232396
chr7	91968077	91968176	3351286	0	+	0.494949	(0.476,0.515]	chr7	312180	266	INTRON	INTRON	AKAP9	ENSG00000127914.19	ENST00000680534.1:ENST00000680513.1:ENST00000680072.1:ENST00000679821.1:ENST00000679554.1:ENST00000356239.8:ENST00000679521.1:ENST00000680181.1:ENST00000681722.1:ENST00000680766.1:ENST00000679448.1:ENST00000681412.1:ENST00000680047.1:ENST00000679474.1:ENST00000680952.1:ENST00000679457.1:ENST00000679722.1:ENST00000680074.1:ENST00000493453.1:ENST00000394564.5:ENST00000674381.2:ENST00000359028.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	35	2	4.01777	4.59908	5.18039	0.0411361	6.58744e-4	0.1451	0.0232396
chr1	244421661	244421757	672534	0	-	0.46875	(0.44,0.476]	chr1	79547	10	INTRON	INTRON	ADSS2	ENSG00000035687.10	ENST00000366535.4:ENST00000462358.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	33	2	4.33899	4.59858	4.85817	0.0206616	0.00223254	0.110999	0.0435144
chr11	64201188	64201287	4802197	0	+	0.464646	(0.44,0.476]	chr11	445296	5	INTRON	INTRON	STIP1	ENSG00000168439.17	ENST00000358794.9:ENST00000305218.9:ENST00000536973.5:ENST00000538945.5:ENST00000540887.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	33	2	4.33899	4.59858	4.85817	0.0206616	0.00223254	0.110999	0.0435144
chr14	35299442	35299541	5694026	0	+	0.454545	(0.44,0.476]	chr14	541488	58	INTRON	INTRON	ENSG00000258790:PSMA6	ENSG00000258790.1:ENSG00000100902.11	ENST00000557565.1:ENST00000540871.5:ENST00000622405.4:ENST00000627895.2:ENST00000554541.5:ENST00000261479.9:ENST00000554843.5:ENST00000554961.5:ENST00000554620.5:ENST00000556167.1:ENST00000553809.5:ENST00000553688.5:ENST00000555764.5:ENST00000556506.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	33	2	4.33899	4.59858	4.85817	0.0206616	0.00223254	0.110999	0.0435144
chr2	131048173	131048273	1228632	0	-	0.46	(0.44,0.476]	chr2	130962	4	UTR3	UTR3:EXON_MRNA	FAM168B	ENSG00000152102.18	ENST00000389915.4:ENST00000409185.5	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.33899	4.59858	4.85817	0.0206616	0.00223254	0.110999	0.0435144
chr21	42907366	42907466	7411478	0	+	0.47	(0.44,0.476]	chr21	755308	27	INTRON	INTRON	NDUFV3	ENSG00000160194.18	ENST00000460259.1:ENST00000340344.4:ENST00000354250.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	33	2	4.33899	4.59858	4.85817	0.0206616	0.00223254	0.110999	0.0435144
chr21	44797890	44797990	7468692	0	-	0.46	(0.44,0.476]	chr21	761177	94	INTRON	INTRON	UBE2G2	ENSG00000184787.19	ENST00000345496.7:ENST00000497630.5:ENST00000477954.5:ENST00000491513.5:ENST00000330942.9:ENST00000478200.1:ENST00000497664.5:ENST00000462569.5:ENST00000490450.5:ENST00000496395.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	33	2	4.43525	4.597965	4.76068	0.00897296	0.00653414	0.0849778	0.0699952
chr4	55531619	55531719	2149756	0	-	0.47	(0.44,0.476]	chr4	211545	212	INTRON	INTRON	CLOCK	ENSG00000134852.15	ENST00000513440.6:ENST00000381322.5:ENST00000435527.6:ENST00000506923.5:ENST00000509151.5:ENST00000513033.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	33	2	4.43525	4.597965	4.76068	0.00897296	0.00653414	0.0849778	0.0699952
chr5	37359933	37360032	2602655	0	-	0.444444	(0.44,0.476]	chr5	247515	14	INTRON	INTRON	NUP155	ENSG00000113569.16	ENST00000231498.8:ENST00000381843.6:ENST00000513532.1	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.43525	4.597965	4.76068	0.00897296	0.00653414	0.0849778	0.0699952
chr15	64404457	64404555	6043565	0	+	0.540816	(0.515,0.57]	chr15	575628	33	INTRON	INTRON	TRIP4	ENSG00000103671.10	ENST00000559565.5:ENST00000261884.8:ENST00000558820.5:ENST00000560567.5:ENST00000561265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	31	2	4.51	4.59784	4.68568	0.00809449	0.00270027	0.0766625	0.0479115
chr20	62940596	62940694	7299540	0	+	0.55102	(0.515,0.57]	chr20	742711	19	INTRON	INTRON	GID8	ENSG00000101193.8	ENST00000266069.5	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.51	4.59784	4.68568	0.00809449	0.00270027	0.0766625	0.0479115
chr9	124922392	124922459	4349736	0	-	0.522388	(0.515,0.57]	chr9	399372	1	INTRON	INTRON	GOLGA1	ENSG00000136935.14	ENST00000373555.9:ENST00000475407.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	31	2	4.51	4.59784	4.68568	0.00809449	0.00270027	0.0766625	0.0479115
chr5	159189728	159189828	2758988	0	-	0.36	(0.35,0.378]	chr5	260356	73	INTRON	INTRON	RNF145	ENSG00000145860.12	ENST00000424310.7:ENST00000519865.5:ENST00000274542.6:ENST00000611185.4:ENST00000521606.6:ENST00000518802.5:ENST00000520638.1:ENST00000520548.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	99	2	3.61985	4.597745	5.57564	5.93654e-4	3.53207e-5	0.0225024	0.00474674
chr1	229543951	229544050	653622	0	-	0.525253	(0.515,0.57]	chr1	77476	12	INTRON	INTRON	ABCB10	ENSG00000135776.5	ENST00000344517.5	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.5963	4.597720000000001	4.59914	0.00616166	0.00370287	0.0676501	0.0561162
chr6	52509027	52509127	3106046	0	-	0.53	(0.515,0.57]	chr6	290867	1	SS5_PROX	SS5_PROX:INTRON	TRAM2	ENSG00000065308.5	ENST00000182527.4	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.5963	4.597720000000001	4.59914	0.00616166	0.00370287	0.0676501	0.0561162
chr7	99511652	99511752	3362448	0	+	0.52	(0.515,0.57]	chr7	314086	48	INTRON	INTRON	ZKSCAN5	ENSG00000196652.12	ENST00000326775.10:ENST00000451158.5:ENST00000394170.6:ENST00000454175.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	31	2	4.5963	4.597720000000001	4.59914	0.00616166	0.00370287	0.0676501	0.0561162
chr1	65447704	65447804	137461	0	+	0.46	(0.44,0.476]	chr1	15495	118	INTRON	INTRON	LEPR	ENSG00000116678.20	ENST00000371060.7:ENST00000371059.7:ENST00000349533.11	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.01038	4.597595	5.18481	0.0433743	6.21872e-4	0.148082	0.0223951
chr16	58577640	58577733	6495845	0	-	0.44086	(0.44,0.476]	chr16	628576	7	INTRON	INTRON	CNOT1	ENSG00000125107.19	ENST00000317147.10:ENST00000569240.5:ENST00000567188.5:ENST00000441024.6:ENST00000565605.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	35	2	4.01038	4.597595	5.18481	0.0433743	6.21872e-4	0.148082	0.0223951
chr10	133407945	133408044	4540358	0	+	0.313131	(0.28,0.32]	chr10	419095	48	INTRON	INTRON	MTG1	ENSG00000148824.19	ENST00000477902.6:ENST00000317502.11:ENST00000432508.3:ENST00000460848.5:ENST00000473735.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	35	2	4.50981	4.59754	4.68527	0.0275554	0.00819419	0.123904	0.0810802
chr12	53164230	53164328	5327385	0	-	0.295918	(0.28,0.32]	chr12	508175	25	INTRON	INTRON	CSAD	ENSG00000139631.20	ENST00000444623.6:ENST00000267085.8:ENST00000475890.5:ENST00000379850.7:ENST00000379846.5:ENST00000453446.6:ENST00000490923.5:ENST00000490589.5:ENST00000485004.5:ENST00000548698.5:ENST00000483632.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	35	2	4.50981	4.59754	4.68527	0.0275554	0.00819419	0.123904	0.0810802
chr2	55385278	55385378	1124045	0	-	0.3	(0.28,0.32]	chr2	120560	100	INTRON	INTRON	CCDC88A	ENSG00000115355.18	ENST00000263630.13:ENST00000436346.7:ENST00000336838.10:ENST00000642200.1:ENST00000413716.7:ENST00000643413.1:ENST00000647401.1:ENST00000645311.1:ENST00000646796.1:ENST00000645571.1:ENST00000645477.1:ENST00000645072.1:ENST00000644890.1:ENST00000644630.1:ENST00000647098.1:ENST00000646324.1:ENST00000642890.1:ENST00000647517.1:ENST00000645031.1:ENST00000645484.1:ENST00000645529.1:ENST00000644033.1:ENST00000644193.1:ENST00000645168.1:ENST00000647341.1:ENST00000430086.1:ENST00000644127.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	35	2	4.50981	4.59754	4.68527	0.0275554	0.00819419	0.123904	0.0810802
chr2	152657588	152657688	1245891	0	-	0.29	(0.28,0.32]	chr2	132240	3	SS5_PROX	SS5_PROX:INTRON	PRPF40A	ENSG00000196504.20	ENST00000410080.8:ENST00000545856.8:ENST00000696382.1:ENST00000696381.1	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.50981	4.59754	4.68527	0.0275554	0.00819419	0.123904	0.0810802
chr3	43620277	43620376	1675428	0	-	0.292929	(0.28,0.32]	chr3	171046	18	INTRON	INTRON	ANO10	ENSG00000160746.13	ENST00000292246.8:ENST00000350459.8:ENST00000396091.7:ENST00000414522.6:ENST00000451430.6:ENST00000427171.5:ENST00000428472.5:ENST00000444344.5:ENST00000456438.5:ENST00000413397.5:ENST00000439141.5:ENST00000428831.1:ENST00000436073.1	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.50981	4.59754	4.68527	0.0275554	0.00819419	0.123904	0.0810802
chr4	84914389	84914489	2190736	0	-	0.32	(0.28,0.32]	chr4	215298	170	INTRON	INTRON	WDFY3	ENSG00000163625.16	ENST00000295888.9:ENST00000509172.1:ENST00000502713.1	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.50981	4.59754	4.68527	0.0275554	0.00819419	0.123904	0.0810802
chr1	218316699	218316798	317483	0	+	0.292929	(0.28,0.32]	chr1	36399	87	INTRON	INTRON	RRP15	ENSG00000067533.6	ENST00000366932.4	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.58875	4.597424999999999	4.6061	0.0230574	0.0102724	0.118056	0.089002
chr1	225424489	225424589	645723	0	-	0.31	(0.28,0.32]	chr1	76392	4	SS3_PROX	SS3_PROX:INTRON	LBR	ENSG00000143815.15	ENST00000272163.9:ENST00000338179.6:ENST00000651341.1:ENST00000425080.1:ENST00000421383.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	35	2	4.58875	4.597424999999999	4.6061	0.0230574	0.0102724	0.118056	0.089002
chr11	57809641	57809741	4793634	0	+	0.31	(0.28,0.32]	chr11	443800	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ENSG00000288534:CTNND1	ENSG00000288534.1:ENSG00000198561.16	ENST00000673781.1:ENST00000673810.1:ENST00000674116.1:ENST00000674060.1:ENST00000524630.5:ENST00000529919.5:ENST00000682741.1:ENST00000358694.10:ENST00000361332.8:ENST00000361391.10:ENST00000361796.9:ENST00000415361.6:ENST00000426142.6:ENST00000428599.6:ENST00000525902.5:ENST00000526357.5:ENST00000526772.5:ENST00000527467.5:ENST00000528232.5:ENST00000528621.5:ENST00000529526.5:ENST00000529873.5:ENST00000529986.5:ENST00000530094.5:ENST00000530748.5:ENST00000531014.5:ENST00000532245.5:ENST00000532463.5:ENST00000532649.5:ENST00000532787.5:ENST00000532844.5:ENST00000533667.5:ENST00000534579.5:ENST00000399050.10:ENST00000526938.5:ENST00000531007.2:ENST00000674015.1:ENST00000673826.1:ENST00000673683.1:ENST00000674106.1:ENST00000681984.1:ENST00000683906.1:ENST00000673661.1:ENST00000682621.1:ENST00000683201.1:ENST00000682974.1:ENST00000684035.1:ENST00000683510.1:ENST00000683769.1:ENST00000530720.2:ENST00000684704.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	35	2	4.58875	4.597424999999999	4.6061	0.0230574	0.0102724	0.118056	0.089002
chr2	151797298	151797398	1243423	0	-	0.29	(0.28,0.32]	chr2	132026	50	INTRON	INTRON	ARL5A	ENSG00000162980.17	ENST00000446896.7	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	0	35	2	4.58875	4.597424999999999	4.6061	0.0230574	0.0102724	0.118056	0.089002
chr22	21965475	21965575	7561842	0	-	0.31	(0.28,0.32]	chr22	773506	1	SS3_PROX	SS3_PROX:INTRON	TOP3B	ENSG00000100038.20	ENST00000357179.10:ENST00000457179.5:ENST00000457270.5:ENST00000444502.5:ENST00000398793.6:ENST00000436282.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	35	2	4.58875	4.597424999999999	4.6061	0.0230574	0.0102724	0.118056	0.089002
chr7	2752158	2752258	3468525	0	-	0.3	(0.28,0.32]	chr7	324325	183	INTRON	INTRON	GNA12	ENSG00000146535.14	ENST00000275364.8:ENST00000407904.7:ENST00000491117.5:ENST00000407653.1:ENST00000496740.6:ENST00000471281.5:ENST00000485329.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	35	2	4.58875	4.597424999999999	4.6061	0.0230574	0.0102724	0.118056	0.089002
chr10	86503930	86504030	4659186	0	-	0.51	(0.476,0.515]	chr10	429294	28	INTRON	INTRON	WAPL	ENSG00000062650.20	ENST00000298767.10	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.13586	4.597165	5.05847	0.031846	0.00108081	0.13151	0.0300133
chr2	27661493	27661591	1087989	0	-	0.357143	(0.35,0.378]	chr2	116728	2	UTR5	UTR5:EXON_MRNA:SS3_PROX:INTRON	SUPT7L	ENSG00000119760.16	ENST00000337768.10:ENST00000404798.6:ENST00000406540.5:ENST00000405491.5:ENST00000464789.2	protein_coding	protein_coding	protein_coding	protein_coding	2	104	2	2.79472	4.59694	6.39916	0.00303911	1.77488e-6	0.0493883	8.01078e-4
chr1	185306725	185306749	603601	0	-	0.375	(0.35,0.378]	chr1	71895	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	IVNS1ABP	ENSG00000116679.16	ENST00000367498.8:ENST00000459929.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	34	2	4.29839	4.59681	4.89523	0.0294717	0.00253947	0.128055	0.0465056
chr4	25844997	25845097	2120449	0	-	0.37	(0.35,0.378]	chr4	209468	93	INTRON	INTRON	SEL1L3	ENSG00000091490.11	ENST00000264868.9:ENST00000399878.8:ENST00000502949.5:ENST00000513364.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	34	2	4.29839	4.59681	4.89523	0.0294717	0.00253947	0.128055	0.0465056
chr7	101914036	101914135	3367330	0	+	0.373737	(0.35,0.378]	chr7	315219	2	INTRON	INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000497815.5:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000607092.1:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000558469.5:ENST00000560541.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	34	2	4.29839	4.59681	4.89523	0.0294717	0.00253947	0.128055	0.0465056
chr8	106731467	106731567	3846760	0	+	0.37	(0.35,0.378]	chr8	354232	48	INTRON	INTRON	OXR1	ENSG00000164830.19	ENST00000517566.7:ENST00000531443.6:ENST00000442977.6:ENST00000435082.1:ENST00000312046.10:ENST00000519415.6:ENST00000449762.6:ENST00000297447.10:ENST00000521592.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	34	2	4.29839	4.59681	4.89523	0.0294717	0.00253947	0.128055	0.0465056
chrX	118435233	118435329	7708012	0	+	0.375	(0.35,0.378]	chrX	788606	20	INTRON	INTRON	WDR44	ENSG00000131725.14	ENST00000371822.9:ENST00000254029.8:ENST00000371825.7:ENST00000371848.3	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.29839	4.59681	4.89523	0.0294717	0.00253947	0.128055	0.0465056
chr6	2969394	2969492	3047711	0	-	0.173469	[0,0.28]	chr6	283599	7	UTR5	UTR5:EXON_MRNA:SS3_PROX:INTRON	SERPINB6	ENSG00000124570.21	ENST00000643098.1:ENST00000380546.7:ENST00000380539.7:ENST00000380529.5:ENST00000649845.1:ENST00000644178.1:ENST00000612421.3:ENST00000616722.4:ENST00000642543.1:ENST00000644388.1:ENST00000380520.6:ENST00000645580.1:ENST00000644693.1:ENST00000646775.1:ENST00000645421.1:ENST00000643227.1:ENST00000646688.1:ENST00000644777.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	84	2	3.63981	4.596685	5.55356	0.00278704	8.51767e-4	0.0469265	0.0264928
chr1	90971254	90971354	502018	0	-	0.28	[0,0.28]	chr1	59492	296	INTRON	INTRON	ZNF644	ENSG00000122482.22	ENST00000370440.5:ENST00000337393.10:ENST00000347275.9:ENST00000361321.5:ENST00000467231.5:ENST00000498303.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	84	2	3.30083	4.596485	5.89214	0.00319246	9.08725e-4	0.0520345	0.0278396
chr1	113759192	113759290	525427	0	-	0.663265	(0.57,1]	chr1	61819	6	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	PHTF1	ENSG00000116793.16	ENST00000369604.6:ENST00000369600.5:ENST00000369598.5:ENST00000357783.6:ENST00000493212.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	61	2	3.44193	4.5963449999999995	5.75076	4.86135e-5	1.73259e-6	0.00605189	7.91759e-4
chr1	113724158	113724258	525067	0	-	0.38	(0.378,0.408]	chr1	61782	91	INTRON	INTRON	PHTF1	ENSG00000116793.16	ENST00000369604.6:ENST00000393357.6:ENST00000369600.5:ENST00000369598.5:ENST00000357783.6	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.50056	4.596125000000001	4.69169	0.015974	0.00432302	0.101453	0.0599409
chr11	62818866	62818966	4961588	0	-	0.4	(0.378,0.408]	chr11	466978	29	INTRON	INTRON	STX5	ENSG00000162236.13	ENST00000294179.8:ENST00000377897.8:ENST00000394690.5:ENST00000492066.5:ENST00000491231.5:ENST00000677401.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	33	2	4.50056	4.596125000000001	4.69169	0.015974	0.00432302	0.101453	0.0599409
chr17	32448141	32448240	6598380	0	+	0.40404	(0.378,0.408]	chr17	641971	7	INTRON	INTRON	PSMD11	ENSG00000108671.11	ENST00000578213.5:ENST00000649012.1:ENST00000457654.6:ENST00000578397.5:ENST00000579451.1:ENST00000261712.8:ENST00000580904.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	33	2	4.50056	4.596125000000001	4.69169	0.015974	0.00432302	0.101453	0.0599409
chr2	27237017	27237104	717362	0	+	0.402299	(0.378,0.408]	chr2	83094	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CAD	ENSG00000084774.14	ENST00000264705.9:ENST00000403525.5:ENST00000458503.1	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.50056	4.596125000000001	4.69169	0.015974	0.00432302	0.101453	0.0599409
chr21	36891659	36891759	7460810	0	-	0.39	(0.378,0.408]	chr21	760114	1240	INTRON	INTRON	HLCS	ENSG00000159267.17	ENST00000674895.3:ENST00000336648.8:ENST00000612277.4:ENST00000399120.5:ENST00000675307.1:ENST00000675057.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	33	2	4.50056	4.596125000000001	4.69169	0.015974	0.00432302	0.101453	0.0599409
chr22	38067294	38067385	7513631	0	+	0.395604	(0.378,0.408]	chr22	767436	2	SS3_PROX	SS3_PROX:INTRON	PICK1	ENSG00000100151.16	ENST00000404072.7:ENST00000424694.5:ENST00000484021.5:ENST00000437453.5:ENST00000356976.8:ENST00000426258.5:ENST00000468288.5:ENST00000466374.1:ENST00000435166.1:ENST00000432756.6:ENST00000472724.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	33	2	4.50056	4.596125000000001	4.69169	0.015974	0.00432302	0.101453	0.0599409
chr3	138227620	138227719	1514360	0	+	0.383838	(0.378,0.408]	chr3	158318	35	INTRON	INTRON	ARMC8	ENSG00000114098.18	ENST00000538260.5:ENST00000481646.5:ENST00000469044.6:ENST00000491704.5:ENST00000461600.5:ENST00000466749.5:ENST00000358441.6:ENST00000489213.5:ENST00000461822.5:ENST00000485396.5:ENST00000471453.5:ENST00000470821.5:ENST00000471709.5:ENST00000463485.5:ENST00000470842.1:ENST00000469860.2:ENST00000470549.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	33	2	4.50056	4.596125000000001	4.69169	0.015974	0.00432302	0.101453	0.0599409
chr7	111277395	111277495	3621256	0	-	0.4	(0.378,0.408]	chr7	337093	3135	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	33	2	4.50056	4.596125000000001	4.69169	0.015974	0.00432302	0.101453	0.0599409
chr9	85648799	85648898	4275391	0	-	0.383838	(0.378,0.408]	chr9	393279	20	INTRON	INTRON	AGTPBP1	ENSG00000135049.16	ENST00000357081.8:ENST00000376083.7:ENST00000337006.8:ENST00000628899.1	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.50056	4.596125000000001	4.69169	0.015974	0.00432302	0.101453	0.0599409
chr14	71365003	71365103	5779912	0	+	0.5	(0.476,0.515]	chr14	547500	431	INTRON	INTRON	SIPA1L1	ENSG00000197555.10	ENST00000555989.5:ENST00000553453.5:ENST00000556408.5:ENST00000381232.8:ENST00000554362.5:ENST00000556780.5:ENST00000554126.5:ENST00000555652.5:ENST00000557151.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	34	2	4.21964	4.596085	4.97253	0.0167715	0.00311573	0.110511	0.0498063
chr19	5961355	5961454	7125440	0	-	0.484848	(0.476,0.515]	chr19	717377	30	INTRON	INTRON	RANBP3	ENSG00000031823.14	ENST00000340578.10:ENST00000439268.6:ENST00000592771.5:ENST00000591092.5:ENST00000034275.12:ENST00000587479.2:ENST00000592621.5:ENST00000590623.5:ENST00000591736.5:ENST00000590953.5:ENST00000588879.5:ENST00000587159.5:ENST00000586117.5:ENST00000589353.5:ENST00000587463.5:ENST00000588010.5:ENST00000591124.5:ENST00000585339.5:ENST00000592133.5:ENST00000591881.5:ENST00000589886.5:ENST00000587263.5:ENST00000587956.5:ENST00000591333.5:ENST00000592266.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	34	2	4.21964	4.596085	4.97253	0.0167715	0.00311573	0.110511	0.0498063
chr9	131489187	131489285	4217955	0	+	0.5	(0.476,0.515]	chr9	386870	7	INTRON	INTRON	PRRC2B	ENSG00000288701.1	ENST00000684596.1:ENST00000683519.1:ENST00000682501.1:ENST00000682662.1:ENST00000683161.1	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.21964	4.596085	4.97253	0.0167715	0.00311573	0.110511	0.0498063
chr11	48000906	48001006	4789422	0	+	0.36	(0.35,0.378]	chr11	443265	195	INTRON	INTRON	PTPRJ	ENSG00000149177.14	ENST00000418331.7:ENST00000440289.6:ENST00000527952.1:ENST00000534219.5	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.40128	4.5960350000000005	4.79079	0.0120289	0.00846427	0.0962115	0.0776969
chr14	102608319	102608419	5822690	0	+	0.36	(0.35,0.378]	chr14	552490	146	INTRON	INTRON	RCOR1	ENSG00000089902.10	ENST00000262241.7	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.40128	4.5960350000000005	4.79079	0.0120289	0.00846427	0.0962115	0.0776969
chr20	58440015	58440114	7290058	0	+	0.363636	(0.35,0.378]	chr20	741694	11	EXON_MRNA	EXON_MRNA:INTRON	VAPB	ENSG00000124164.16	ENST00000475243.6:ENST00000395802.7:ENST00000520497.1:ENST00000265619.6:ENST00000463370.5:ENST00000476395.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	34	2	4.40128	4.5960350000000005	4.79079	0.0120289	0.00846427	0.0962115	0.0776969
chr6	36896671	36896769	2854912	0	+	0.367347	(0.35,0.378]	chr6	269872	17	INTRON	INTRON	C6orf89	ENSG00000198663.17	ENST00000359359.6:ENST00000355190.7:ENST00000373685.1:ENST00000480824.7	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.40128	4.5960350000000005	4.79079	0.0120289	0.00846427	0.0962115	0.0776969
chr8	22408796	22408896	3713049	0	+	0.43	(0.408,0.44]	chr8	344824	3	SS5_PROX	SS5_PROX:INTRON	SLC39A14	ENSG00000104635.15	ENST00000359741.10:ENST00000381237.6:ENST00000240095.10:ENST00000289952.9:ENST00000522881.2	protein_coding	protein_coding	protein_coding	protein_coding	2	91	2	3.42828	4.596025	5.76377	1.64089e-4	9.1223e-5	0.0116917	0.00798362
chr8	30599256	30599356	3931628	0	-	0.45	(0.44,0.476]	chr8	360124	137	INTRON	INTRON	GTF2E2	ENSG00000197265.9	ENST00000355904.9:ENST00000522833.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	35	2	4.1054	4.595995	5.08659	0.0220205	0.00226401	0.123836	0.0425438
chr11	93742241	93742335	4848501	0	+	0.393617	(0.378,0.408]	chr11	452223	1	SS3_PROX	SS3_PROX:SS5_PROX:INTRON	C11orf54	ENSG00000182919.15	ENST00000528288.5:ENST00000617482.4:ENST00000540113.5:ENST00000531516.1:ENST00000331239.8:ENST00000533585.5:ENST00000528099.5:ENST00000530620.5:ENST00000354421.8:ENST00000527003.5:ENST00000531650.5:ENST00000530279.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	33	2	4.58427	4.5959900000000005	4.60771	0.0128325	0.00567576	0.0926667	0.0678837
chr12	120901077	120901177	5435875	0	-	0.39	(0.378,0.408]	chr12	519663	656	INTRON	INTRON	SPPL3	ENSG00000157837.16	ENST00000353487.7:ENST00000536996.5:ENST00000543608.5:ENST00000543854.5	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.58427	4.5959900000000005	4.60771	0.0128325	0.00567576	0.0926667	0.0678837
chr21	44940586	44940686	7417465	0	+	0.38	(0.378,0.408]	chr21	756214	4	SS5_PROX	SS5_PROX:INTRON	SLX9	ENSG00000160256.13	ENST00000397826.7:ENST00000458015.1:ENST00000291634.11	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.58427	4.5959900000000005	4.60771	0.0128325	0.00567576	0.0926667	0.0678837
chr7	24693794	24693893	3291940	0	+	0.383838	(0.378,0.408]	chr7	305802	63	UTR3	UTR3:EXON_MRNA	PALS2	ENSG00000105926.16	ENST00000222644.10	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.58427	4.5959900000000005	4.60771	0.0128325	0.00567576	0.0926667	0.0678837
chr7	75360101	75360198	3337661	0	+	0.463918	(0.44,0.476]	chr7	310719	3	INTRON	INTRON	STAG3L1	ENSG00000205583.14	ENST00000619870.4:ENST00000687422.1:ENST00000684904.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	34	2	4.12843	4.595655	5.06288	0.0337192	0.00102416	0.134145	0.0294041
chr4	139063839	139063937	2246200	0	-	0.367347	(0.35,0.378]	chr4	219542	14	INTRON	INTRON	ELF2	ENSG00000109381.21	ENST00000394235.6:ENST00000686138.1:ENST00000379550.5:ENST00000358635.7:ENST00000379549.7:ENST00000510408.5:ENST00000512627.1:ENST00000514577.5:ENST00000504314.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	114	2	2.80389	4.595605	6.38732	6.14024e-4	1.48233e-5	0.0223951	0.00309621
chr1	167996785	167996883	249097	0	+	0.428571	(0.408,0.44]	chr1	29582	30	INTRON	INTRON	DCAF6	ENSG00000143164.16	ENST00000432587.6:ENST00000367843.7:ENST00000470721.5:ENST00000367840.4:ENST00000312263.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	33	2	4.33238	4.595549999999999	4.85872	0.0218901	0.00221911	0.11491	0.0435144
chr13	97224431	97224531	5518419	0	+	0.41	(0.408,0.44]	chr13	527710	15	INTRON	INTRON	MBNL2	ENSG00000139793.20	ENST00000397601.5:ENST00000343600.9:ENST00000376673.8:ENST00000679496.1:ENST00000685165.1:ENST00000345429.10:ENST00000469707.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	33	2	4.33238	4.595549999999999	4.85872	0.0218901	0.00221911	0.11491	0.0435144
chr6	83187475	83187575	3145819	0	-	0.41	(0.408,0.44]	chr6	293307	4	SS3_PROX	SS3_PROX:INTRON	PGM3	ENSG00000013375.16	ENST00000513973.6:ENST00000512866.5:ENST00000650640.1:ENST00000616566.5:ENST00000283977.9:ENST00000651425.1:ENST00000650642.1:ENST00000651204.1:ENST00000652222.1:ENST00000506587.5:ENST00000509219.2:ENST00000652468.1:ENST00000510258.1:ENST00000505470.5:ENST00000507554.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	33	2	4.33238	4.595549999999999	4.85872	0.0218901	0.00221911	0.11491	0.0435144
chr2	86968334	86968432	824686	0	+	0.27551	[0,0.28]	chr2	92143	48	INTRON	INTRON	RGPD1	ENSG00000187627.17	ENST00000409776.6:ENST00000398193.8:ENST00000641458.2	protein_coding	protein_coding	protein_coding	protein_coding	1	85	2	3.75586	4.59507	5.43428	0.00400834	5.203e-4	0.0551303	0.0204523
chr12	11660948	11661048	5076713	0	+	0.43	(0.408,0.44]	chr12	480040	104	INTRON	INTRON	ETV6	ENSG00000139083.11	ENST00000396373.9:ENST00000541426.1:ENST00000544715.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	33	2	4.4358	4.59489	4.75398	0.00893097	0.00703931	0.0849778	0.0718189
chr8	144174789	144174888	3880588	0	+	0.414141	(0.408,0.44]	chr8	356662	60	INTRON	INTRON	MROH1	ENSG00000179832.18	ENST00000326134.10:ENST00000532255.5:ENST00000525287.5:ENST00000423230.6:ENST00000534366.5:ENST00000527552.5:ENST00000528919.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	33	2	4.4358	4.59489	4.75398	0.00893097	0.00703931	0.0849778	0.0718189
chr9	124764124	124764224	4349144	0	-	0.43	(0.408,0.44]	chr9	399261	304	INTRON	INTRON	NR6A1	ENSG00000148200.17	ENST00000487099.7:ENST00000373584.7:ENST00000416460.6:ENST00000344523.8	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.4358	4.59489	4.75398	0.00893097	0.00703931	0.0849778	0.0718189
chr12	45902750	45902849	5124469	0	+	0.434343	(0.408,0.44]	chr12	483398	87	INTRON	INTRON	ARID2	ENSG00000189079.17	ENST00000334344.11:ENST00000479608.5:ENST00000444670.5:ENST00000457135.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	35	2	4.00385	4.594605	5.18536	0.0454568	6.17381e-4	0.149888	0.0223951
chr1	28579444	28579532	409397	0	-	0.454545	(0.44,0.476]	chr1	49294	6	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	SNHG12	ENSG00000197989.15	ENST00000648127.1:ENST00000470977.6:ENST00000531126.7:ENST00000461832.2:ENST00000481368.6:ENST00000692541.1:ENST00000693199.1:ENST00000461448.6:ENST00000481220.6:ENST00000464612.5:ENST00000474814.1:ENST00000475441.6:ENST00000488745.5:ENST00000483436.5:ENST00000650259.1:ENST00000650239.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	0	34	2	4.22393	4.5944199999999995	4.96491	0.0162322	0.0034249	0.109464	0.0517761
chr15	27250347	27250446	5984947	0	+	0.464646	(0.44,0.476]	chr15	569164	2232	INTRON	INTRON	GABRG3	ENSG00000182256.13	ENST00000615808.5:ENST00000555083.5	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.22393	4.5944199999999995	4.96491	0.0162322	0.0034249	0.109464	0.0517761
chr16	8031723	8031823	6440826	0	-	0.46	(0.44,0.476]	chr16	620351	241	INTRON	INTRON	ENSG00000260289	ENSG00000260289.2	ENST00000670665.1:ENST00000654046.1:ENST00000567103.2	lncRNA	lncRNA	lncRNA	lncRNA	0	34	2	4.22393	4.5944199999999995	4.96491	0.0162322	0.0034249	0.109464	0.0517761
chr19	24065852	24065949	7044191	0	+	0.463918	(0.44,0.476]	chr19	702380	5	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ZNF254:ENSG00000268362	ENSG00000213096.11:ENSG00000268362.6	ENST00000613065.4:ENST00000666101.1:ENST00000653003.1:ENST00000666488.1:ENST00000594934.6:ENST00000654353.1:ENST00000662140.1:ENST00000668060.1:ENST00000660137.1:ENST00000652968.1:ENST00000670905.1:ENST00000658858.1:ENST00000654594.1:ENST00000654372.1:ENST00000652837.1:ENST00000654611.1:ENST00000597683.1:ENST00000671141.1:ENST00000653308.1:ENST00000661386.1:ENST00000668656.1:ENST00000668169.1:ENST00000663458.1:ENST00000662903.1:ENST00000665638.1:ENST00000668701.1:ENST00000655664.1:ENST00000666861.1:ENST00000664627.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	0	34	2	4.22393	4.5944199999999995	4.96491	0.0162322	0.0034249	0.109464	0.0517761
chr5	138400810	138400909	2495347	0	+	0.464646	(0.44,0.476]	chr5	238535	4	INTRON	INTRON	KDM3B	ENSG00000120733.14	ENST00000314358.10:ENST00000510866.5:ENST00000542866.2:ENST00000507996.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	34	2	4.22393	4.5944199999999995	4.96491	0.0162322	0.0034249	0.109464	0.0517761
chr9	95228912	95229011	4291149	0	-	0.464646	(0.44,0.476]	chr9	394741	75	INTRON	INTRON	FANCC	ENSG00000158169.14	ENST00000289081.8:ENST00000375305.6:ENST00000649334.1:ENST00000490972.7:ENST00000649701.1:ENST00000696261.1:ENST00000636777.1:ENST00000474949.1:ENST00000647778.1:ENST00000433829.1:ENST00000647882.1:ENST00000649519.1:ENST00000650176.1:ENST00000648415.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	34	2	4.22393	4.5944199999999995	4.96491	0.0162322	0.0034249	0.109464	0.0517761
chr1	156337418	156337497	566710	0	-	0.405063	(0.378,0.408]	chr1	68040	2	SS3_PROX	SS3_PROX:SS5_PROX:INTRON	CCT3	ENSG00000163468.15	ENST00000295688.8:ENST00000368258.7:ENST00000368259.6:ENST00000368262.7:ENST00000472765.6:ENST00000413555.5:ENST00000496684.6:ENST00000533194.5:ENST00000463132.5:ENST00000446905.5:ENST00000478640.6:ENST00000415548.1:ENST00000368256.3:ENST00000489870.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	92	2	3.08809	4.59425	6.10041	5.71831e-4	4.33573e-5	0.0217398	0.00561811
chr2	99415839	99415938	1189117	0	-	0.414141	(0.408,0.44]	chr2	127631	25	INTRON	INTRON	REV1	ENSG00000135945.10	ENST00000393445.7:ENST00000258428.8:ENST00000413697.5:ENST00000465835.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	68	2	3.46104	4.594015	5.72699	0.00105552	1.93446e-4	0.0299229	0.0127226
chr1	246031657	246031757	675947	0	-	0.53	(0.515,0.57]	chr1	79713	432	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000391836.3:ENST00000464398.1:ENST00000453676.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	130	2	4.46261	4.5939	4.72519	3.19991e-6	1.00012e-6	0.00115967	6.19632e-4
chr11	75405156	75405253	4831887	0	+	0.515464	(0.515,0.57]	chr11	450864	4	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPS3	ENSG00000149273.15	ENST00000531188.6:ENST00000528439.5:ENST00000530721.5:ENST00000422465.6:ENST00000532872.5:ENST00000278572.10:ENST00000527446.5:ENST00000534440.5:ENST00000526248.5:ENST00000525690.1:ENST00000525933.1:ENST00000530170.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	85	2	2.87626	4.59389	6.31152	0.00136224	2.37911e-6	0.0339121	0.00107133
chr3	172325755	172325855	1562425	0	+	0.3	(0.28,0.32]	chr3	161613	145	INTRON	INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000469491.5:ENST00000336824.8:ENST00000416957.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	79	2	3.83973	4.59369	5.34765	0.00287138	2.68965e-4	0.0474836	0.0145349
chr9	128227262	128227360	4203301	0	+	0.438776	(0.408,0.44]	chr9	384064	7	INTRON	INTRON	DNM1	ENSG00000106976.21	ENST00000372923.8:ENST00000341179.11:ENST00000475805.5:ENST00000393594.7:ENST00000628346.2:ENST00000486160.3:ENST00000627543.2:ENST00000627061.2:ENST00000634267.2:ENST00000637999.1:ENST00000441149.6:ENST00000482638.6:ENST00000637317.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	124	2	2.6118	4.5935500000000005	6.5753	5.80745e-4	2.52667e-6	0.0218949	0.0011145
chr4	152508495	152508595	2274814	0	-	0.47	(0.44,0.476]	chr4	221124	187	INTRON	INTRON	FBXW7	ENSG00000109670.16	ENST00000281708.10:ENST00000603548.6:ENST00000604872.6:ENST00000647166.1:ENST00000643834.1:ENST00000642901.1	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	3.8344	4.593335	5.35227	0.041276	8.47974e-4	0.161534	0.0267232
chr11	94468984	94469082	5018312	0	-	0.285714	(0.28,0.32]	chr11	473387	7	INTRON	INTRON	MRE11	ENSG00000020922.13	ENST00000323929.8:ENST00000407439.7:ENST00000323977.7:ENST00000393241.8	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.4263	4.593305	4.76031	0.0330296	0.00656106	0.133816	0.0735539
chr16	80994538	80994637	6530570	0	-	0.282828	(0.28,0.32]	chr16	632657	22	INTRON	INTRON	CMC2	ENSG00000103121.9	ENST00000219400.8:ENST00000563779.5:ENST00000486645.5:ENST00000570195.5:ENST00000566047.5:ENST00000561614.5:ENST00000569187.5:ENST00000570086.5:ENST00000564249.5:ENST00000565650.5:ENST00000567593.5:ENST00000568228.5:ENST00000565914.5:ENST00000565108.5:ENST00000565925.5:ENST00000564174.5:ENST00000565613.5:ENST00000569666.5:ENST00000562713.3:ENST00000562828.5:ENST00000630396.1:ENST00000565514.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	35	2	4.4263	4.593305	4.76031	0.0330296	0.00656106	0.133816	0.0735539
chr2	48378603	48378702	777964	0	+	0.292929	(0.28,0.32]	chr2	87500	33	UTR3	UTR3:EXON_MRNA	FOXN2	ENSG00000170802.17	ENST00000340553.8	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.4263	4.593305	4.76031	0.0330296	0.00656106	0.133816	0.0735539
chr5	145593708	145593808	2744218	0	-	0.32	(0.28,0.32]	chr5	258670	1200	INTRON	INTRON	PRELID2	ENSG00000186314.12	ENST00000510259.5	protein_coding	processed_transcript	protein_coding	processed_transcript	1	79	2	3.22074	4.59328	5.96582	0.00362783	3.08567e-4	0.055479	0.0161584
chr10	77820307	77820404	4653709	0	-	0.463918	(0.44,0.476]	chr10	428684	4	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	DLG5	ENSG00000151208.17	ENST00000372391.7:ENST00000475613.6:ENST00000424842.5:ENST00000459739.5:ENST00000468332.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	97	2	3.14512	4.593125	6.04113	5.78837e-4	8.64562e-6	0.0223209	0.00211124
chr19	52650047	52650147	7206724	0	-	0.37	(0.35,0.378]	chr19	731394	118	INTRON	INTRON	ZNF83	ENSG00000167766.20	ENST00000600714.5:ENST00000601257.5:ENST00000594682.6:ENST00000687234.1:ENST00000598536.5:ENST00000595171.5:ENST00000596440.5:ENST00000602232.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	81	2	3.87042	4.59299	5.31556	4.97087e-4	2.9524e-4	0.0201536	0.0159581
chr1	186328551	186328649	603912	0	-	0.306122	(0.28,0.32]	chr1	72004	5	INTRON	INTRON	TPR	ENSG00000047410.14	ENST00000367478.9	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.52233	4.59296	4.66359	0.0193496	0.0129279	0.108861	0.0990564
chr1	241851350	241851438	344402	0	+	0.284091	(0.28,0.32]	chr1	40091	4	INTRON	INTRON	EXO1	ENSG00000174371.17	ENST00000366548.8:ENST00000423131.5:ENST00000523590.5:ENST00000348581.9:ENST00000518483.5:ENST00000437497.5:ENST00000450748.1:ENST00000493702.5:ENST00000469419.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	35	2	4.52233	4.59296	4.66359	0.0193496	0.0129279	0.108861	0.0990564
chr10	32021955	32022039	4590466	0	-	0.309524	(0.28,0.32]	chr10	423227	3	SS5_PROX	SS5_PROX:INTRON	KIF5B	ENSG00000170759.11	ENST00000302418.5	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.52233	4.59296	4.66359	0.0193496	0.0129279	0.108861	0.0990564
chr3	138829203	138829303	1831445	0	-	0.32	(0.28,0.32]	chr3	184062	323	INTRON	INTRON	PIK3CB	ENSG00000051382.9	ENST00000674063.1:ENST00000477593.5:ENST00000462898.5:ENST00000483968.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	35	2	4.52233	4.59296	4.66359	0.0193496	0.0129279	0.108861	0.0990564
chr5	60957827	60957927	2359346	0	+	0.31	(0.28,0.32]	chr5	227644	120	INTRON	INTRON	NDUFAF2	ENSG00000164182.12	ENST00000678452.1:ENST00000677756.1:ENST00000296597.10:ENST00000511107.1:ENST00000677932.1:ENST00000502658.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	35	2	4.52233	4.59296	4.66359	0.0193496	0.0129279	0.108861	0.0990564
chr14	77557564	77557646	5927547	0	-	0.439024	(0.408,0.44]	chr14	563703	4	SS3_PROX	SS3_PROX:INTRON	SPTLC2	ENSG00000100596.8	ENST00000216484.7:ENST00000692906.1:ENST00000687688.1:ENST00000554901.1:ENST00000691887.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	35	2	4.10594	4.592885000000001	5.07983	0.0219367	0.00247652	0.123836	0.0446195
chr17	31880072	31880126	6752693	0	-	0.388889	(0.378,0.408]	chr17	663764	1	SS5_PROX	SS5_PROX:INTRON	UTP6	ENSG00000108651.10	ENST00000261708.9:ENST00000477128.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	69	2	3.76175	4.592665	5.42358	8.39231e-4	2.68579e-4	0.0266487	0.0145349
chr5	33443445	33443544	2335147	0	+	0.383838	(0.378,0.408]	chr5	225400	12	INTRON	INTRON	TARS1	ENSG00000113407.14	ENST00000502553.5:ENST00000514259.5:ENST00000502508.5:ENST00000508361.5:ENST00000265112.8:ENST00000455217.6:ENST00000507716.5:ENST00000509731.5:ENST00000505012.5:ENST00000513066.3:ENST00000627006.2:ENST00000626210.1:ENST00000506040.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	69	2	3.76175	4.592665	5.42358	8.39231e-4	2.68579e-4	0.0266487	0.0145349
chr1	13787109	13787206	32036	0	+	0.391753	(0.378,0.408]	chr1	3887	7	UTR3	UTR3:EXON_MRNA:INTRON	PRDM2	ENSG00000116731.23	ENST00000311066.10:ENST00000376048.9:ENST00000235372.11:ENST00000413440.5:ENST00000343137.8:ENST00000503842.5:ENST00000505823.5	protein_coding	protein_coding	protein_coding	protein_coding	1	69	2	3.47377	4.59244	5.71111	0.00103087	2.59738e-4	0.0294094	0.0148796
chr1	92665041	92665140	506955	0	-	0.535354	(0.515,0.57]	chr1	59821	12	INTRON	INTRON	EVI5	ENSG00000067208.16	ENST00000370331.5:ENST00000540033.2:ENST00000684568.2:ENST00000491940.5:ENST00000468580.5:ENST00000492613.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	31	2	4.41498	4.59241	4.76984	0.0106866	0.00198034	0.0861859	0.0411469
chr11	703833	703932	4720056	0	+	0.535354	(0.515,0.57]	chr11	436277	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	EPS8L2:TMEM80	ENSG00000177106.17:ENSG00000177042.16	ENST00000524763.5:ENST00000608174.6:ENST00000397512.8:ENST00000526170.6:ENST00000492023.1:ENST00000397510.9:ENST00000528024.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	31	2	4.41498	4.59241	4.76984	0.0106866	0.00198034	0.0861859	0.0411469
chr12	54273186	54273282	5330829	0	-	0.520833	(0.515,0.57]	chr12	508634	15	EXON_LNCRNA	EXON_LNCRNA:INTRON	CBX5	ENSG00000094916.16	ENST00000209875.9:ENST00000618078.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	31	2	4.41498	4.59241	4.76984	0.0106866	0.00198034	0.0861859	0.0411469
chr6	70455863	70455962	2894430	0	+	0.565657	(0.515,0.57]	chr6	273963	29	INTRON	INTRON	FAM135A	ENSG00000082269.17	ENST00000505769.5:ENST00000515323.5:ENST00000418814.7:ENST00000457062.6:ENST00000361499.7:ENST00000370479.7:ENST00000194672.11:ENST00000505868.1:ENST00000393299.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	31	2	4.41498	4.59241	4.76984	0.0106866	0.00198034	0.0861859	0.0411469
chr7	128747052	128747152	3408453	0	+	0.33	(0.32,0.35]	chr7	318423	1	SS3_PROX	SS3_PROX:INTRON	CALU	ENSG00000128595.17	ENST00000535011.6:ENST00000542996.6:ENST00000249364.9:ENST00000449187.6:ENST00000479257.5	protein_coding	protein_coding	protein_coding	protein_coding	7	179	2	2.55208	4.59227	6.63246	1.81746e-4	7.52228e-6	0.0117278	0.00206091
chr19	40268885	40268985	7183583	0	-	0.53	(0.515,0.57]	chr19	726516	3	EXON_LNCRNA	EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	AKT2	ENSG00000105221.18	ENST00000392038.7:ENST00000424901.5:ENST00000391844.8:ENST00000584288.5:ENST00000579047.5:ENST00000537834.5:ENST00000487537.3:ENST00000486368.6:ENST00000596634.5:ENST00000452077.5:ENST00000416362.5:ENST00000578123.5:ENST00000672890.1:ENST00000423127.5:ENST00000358335.9:ENST00000456441.5:ENST00000583859.5:ENST00000416994.6:ENST00000427375.1:ENST00000498350.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	31	2	4.50102	4.59206	4.6831	0.00510768	0.00471288	0.0646039	0.0600108
chr2	27606361	27606459	718174	0	+	0.530612	(0.515,0.57]	chr2	83389	27	INTRON	INTRON	ZNF512	ENSG00000243943.10	ENST00000413371.6:ENST00000416005.6:ENST00000556601.5:ENST00000379717.5:ENST00000355467.6	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.50102	4.59206	4.6831	0.00510768	0.00471288	0.0646039	0.0600108
chr7	44467571	44467670	3528058	0	-	0.535354	(0.515,0.57]	chr7	328977	395	INTRON	INTRON	NUDCD3	ENSG00000015676.18	ENST00000355451.8:ENST00000460110.5:ENST00000472246.5:ENST00000464812.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	31	2	4.50102	4.59206	4.6831	0.00510768	0.00471288	0.0646039	0.0600108
chr10	63267962	63268062	4633408	0	-	0.35	(0.32,0.35]	chr10	426221	28	INTRON	INTRON	JMJD1C	ENSG00000171988.20	ENST00000399262.7:ENST00000402544.5:ENST00000542921.5:ENST00000469152.5:ENST00000489372.4:ENST00000633035.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	36	2	4.06299	4.59199	5.12099	0.0559439	0.00143632	0.165463	0.0347139
chr3	172764900	172765000	1563367	0	+	0.33	(0.32,0.35]	chr3	161770	4	SS5_PROX	SS5_PROX:INTRON	ECT2	ENSG00000114346.14	ENST00000232458.9:ENST00000540509.5:ENST00000392692.8:ENST00000417960.5:ENST00000441497.6:ENST00000444250.1	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.06299	4.59199	5.12099	0.0559439	0.00143632	0.165463	0.0347139
chr5	19040798	19040898	2569473	0	-	0.35	(0.32,0.35]	chr5	246210	21	INTRON	INTRON	ENSG00000249174	ENSG00000249174.1	ENST00000504827.1	lncRNA	lncRNA	lncRNA	lncRNA	0	36	2	4.06299	4.59199	5.12099	0.0559439	0.00143632	0.165463	0.0347139
chr12	94365596	94365696	5389152	0	-	0.45	(0.44,0.476]	chr12	513815	296	INTRON	INTRON	CEP83	ENSG00000173588.16	ENST00000397809.10:ENST00000339839.9:ENST00000547232.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	73	2	3.68473	4.591755	5.49878	5.47507e-4	1.52058e-4	0.0215463	0.0106137
chr11	108067902	108068001	4856326	0	+	0.40404	(0.378,0.408]	chr11	452903	126	INTRON	INTRON	CUL5	ENSG00000166266.14	ENST00000393094.7:ENST00000531427.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	33	2	4.41169	4.5913699999999995	4.77105	0.0199606	0.00330823	0.109608	0.0527031
chr19	45615301	45615379	7192563	0	-	0.397436	(0.378,0.408]	chr19	728269	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	EML2	ENSG00000125746.18	ENST00000589876.5:ENST00000587152.6:ENST00000245925.8:ENST00000586195.5:ENST00000588308.5:ENST00000536630.5:ENST00000592433.5:ENST00000586405.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	33	2	4.41169	4.5913699999999995	4.77105	0.0199606	0.00330823	0.109608	0.0527031
chr20	39025459	39025559	7273354	0	+	0.39	(0.378,0.408]	chr20	739183	1	SS5_PROX	SS5_PROX:INTRON	DHX35	ENSG00000101452.15	ENST00000373325.6:ENST00000252011.8:ENST00000373323.8:ENST00000652169.1:ENST00000484417.5:ENST00000449559.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	33	2	4.41169	4.5913699999999995	4.77105	0.0199606	0.00330823	0.109608	0.0527031
chr3	142450892	142450988	1837659	0	-	0.40625	(0.378,0.408]	chr3	184738	4	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	ATR	ENSG00000175054.16	ENST00000658083.1:ENST00000656114.1:ENST00000350721.9:ENST00000656590.1:ENST00000515810.1:ENST00000513291.2:ENST00000654170.1:ENST00000653893.1:ENST00000666943.1:ENST00000666447.1:ENST00000665483.1:ENST00000661310.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	33	2	4.41169	4.5913699999999995	4.77105	0.0199606	0.00330823	0.109608	0.0527031
chr8	104569732	104569832	4014529	0	-	0.4	(0.378,0.408]	chr8	367439	374	INTRON	INTRON	LRP12	ENSG00000147650.12	ENST00000424843.6:ENST00000276654.10:ENST00000520770.1:ENST00000519675.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	33	2	4.41169	4.5913699999999995	4.77105	0.0199606	0.00330823	0.109608	0.0527031
chr2	111834103	111834203	1214362	0	-	0.42	(0.408,0.44]	chr2	129137	1	SS5_PROX	SS5_PROX:INTRON	ANAPC1	ENSG00000153107.13	ENST00000427997.5:ENST00000341068.8	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.22447	4.59132	4.95817	0.0161655	0.00372419	0.109464	0.0535094
chr22	17747707	17747807	7547969	0	-	0.43	(0.408,0.44]	chr22	771491	33	INTRON	INTRON	BID	ENSG00000015475.19	ENST00000622694.5:ENST00000317361.11:ENST00000614949.4:ENST00000399765.5:ENST00000399767.6:ENST00000342111.9:ENST00000551952.5:ENST00000550946.5:ENST00000473439.5:ENST00000552886.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	34	2	4.22447	4.59132	4.95817	0.0161655	0.00372419	0.109464	0.0535094
chr5	37312617	37312715	2602161	0	-	0.438776	(0.408,0.44]	chr5	247405	15	INTRON	INTRON	NUP155	ENSG00000113569.16	ENST00000231498.8:ENST00000381843.6:ENST00000513532.1	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.22447	4.59132	4.95817	0.0161655	0.00372419	0.109464	0.0535094
chr16	58533646	58533746	6495363	0	-	0.45	(0.44,0.476]	chr16	628427	1	SS5_PROX	SS5_PROX:INTRON	CNOT1	ENSG00000125107.19	ENST00000317147.10:ENST00000569240.5:ENST00000567188.5:ENST00000568917.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	71	2	4.09568	4.5911349999999995	5.08659	0.00226401	4.34828e-5	0.0425438	0.00532088
chr1	113486631	113486731	189675	0	+	0.38	(0.378,0.408]	chr1	20964	823	INTRON	INTRON	MAGI3	ENSG00000081026.19	ENST00000307546.14:ENST00000369617.8:ENST00000369615.5:ENST00000369611.4:ENST00000486456.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	33	2	4.51854	4.59096	4.66338	0.0103469	0.00748824	0.0850389	0.0772645
chr10	45879181	45879281	4607723	0	-	0.4	(0.378,0.408]	chr10	424444	157	INTRON	INTRON	PARGP1	ENSG00000239883.9	ENST00000440803.7:ENST00000688192.1:ENST00000686367.1:ENST00000693310.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	33	2	4.51854	4.59096	4.66338	0.0103469	0.00748824	0.0850389	0.0772645
chr4	140535132	140535232	2053315	0	+	0.38	(0.378,0.408]	chr4	203549	73	INTRON	INTRON	ELMOD2	ENSG00000179387.10	ENST00000323570.8:ENST00000502397.5:ENST00000513606.1	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.51854	4.59096	4.66338	0.0103469	0.00748824	0.0850389	0.0772645
chr10	45476597	45476696	4605979	0	-	0.232323	[0,0.28]	chr10	424339	119	INTRON	INTRON	MARCHF8	ENSG00000165406.16	ENST00000453424.7:ENST00000319836.7:ENST00000395769.6:ENST00000602712.2:ENST00000453980.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	36	2	4.5461	4.5906649999999996	4.63523	0.0365918	0.0139836	0.138959	0.10247
chr10	47539910	47539993	4609343	0	-	0.216867	[0,0.28]	chr10	424645	4	INTRON	INTRON	ENSG00000254929:BMS1P2	ENSG00000254929.6:ENSG00000251079.6	ENST00000605970.5:ENST00000431840.2:ENST00000532854.5	lncRNA	lncRNA	lncRNA:transcribed_unprocessed_pseudogene	lncRNA:processed_transcript	0	36	2	4.5461	4.5906649999999996	4.63523	0.0365918	0.0139836	0.138959	0.10247
chr2	170017219	170017319	910078	0	+	0.24	[0,0.28]	chr2	100411	3	SS5_PROX	SS5_PROX:INTRON	UBR3	ENSG00000144357.18	ENST00000272793.11:ENST00000430321.5:ENST00000392632.6:ENST00000439681.1:ENST00000444475.5:ENST00000465630.1:ENST00000474426.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	36	2	4.5461	4.5906649999999996	4.63523	0.0365918	0.0139836	0.138959	0.10247
chr3	28261104	28261203	1390740	0	+	0.232323	[0,0.28]	chr3	145636	70	INTRON	INTRON	CMC1	ENSG00000187118.14	ENST00000477739.1:ENST00000423894.5:ENST00000466830.6:ENST00000334841.10:ENST00000418849.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	36	2	4.5461	4.5906649999999996	4.63523	0.0365918	0.0139836	0.138959	0.10247
chr4	24546383	24546481	2118625	0	-	0.214286	[0,0.28]	chr4	209224	30	INTRON	INTRON	DHX15	ENSG00000109606.13	ENST00000336812.5	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.5461	4.5906649999999996	4.63523	0.0365918	0.0139836	0.138959	0.10247
chr6	127308683	127308783	3211505	0	-	0.28	[0,0.28]	chr6	298724	141	INTRON	INTRON	ECHDC1	ENSG00000093144.19	ENST00000454859.8:ENST00000531967.5:ENST00000474289.6:ENST00000368295.8:ENST00000454591.6:ENST00000528402.5:ENST00000479525.6:ENST00000368291.6:ENST00000475319.1:ENST00000430841.6:ENST00000368289.6:ENST00000417628.6:ENST00000368292.10:ENST00000436638.5:ENST00000460558.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	36	2	4.5461	4.5906649999999996	4.63523	0.0365918	0.0139836	0.138959	0.10247
chr7	140738128	140738226	3661830	0	-	0.27551	[0,0.28]	chr7	339967	30	INTRON	INTRON	BRAF	ENSG00000157764.14	ENST00000496384.7:ENST00000644969.2:ENST00000644120.1:ENST00000642875.1:ENST00000646891.1:ENST00000644905.1:ENST00000642228.1:ENST00000288602.11:ENST00000646730.1:ENST00000645443.1:ENST00000479537.6:ENST00000644650.1:ENST00000647434.1:ENST00000497784.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	36	2	4.5461	4.5906649999999996	4.63523	0.0365918	0.0139836	0.138959	0.10247
chr4	87338348	87338445	2198743	0	-	0.329897	(0.32,0.35]	chr4	215740	6	INTRON	INTRON	HSD17B11	ENSG00000198189.11	ENST00000358290.9:ENST00000507518.5:ENST00000512344.5:ENST00000502576.5:ENST00000507286.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	34	2	4.53988	4.5901700000000005	4.64046	0.0202178	0.00724767	0.109913	0.0756327
chr11	2951503	2951591	4891568	0	-	0.284091	(0.28,0.32]	chr11	458277	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NAP1L4	ENSG00000205531.13	ENST00000620138.4:ENST00000380542.9:ENST00000469805.5:ENST00000526115.5:ENST00000492594.6:ENST00000526023.5:ENST00000492685.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	163	2	2.85044	4.590135	6.32983	1.15542e-4	6.58821e-5	0.0092182299999999991	0.0071649
chr5	79643876	79643969	2399050	0	+	0.290323	(0.28,0.32]	chr5	231723	6	INTRON	INTRON	TENT2	ENSG00000164329.14	ENST00000423041.6:ENST00000504233.5:ENST00000453514.6:ENST00000428308.6:ENST00000296783.7	protein_coding	protein_coding	protein_coding	protein_coding	1	77	2	3.50836	4.589965	5.67157	0.00117393	9.48957e-4	0.0316446	0.0281755
chr5	132931777	132931877	2724947	0	-	0.51	(0.476,0.515]	chr5	256328	2	SS5_PROX	SS5_PROX:INTRON	AFF4	ENSG00000072364.13	ENST00000265343.10:ENST00000378595.7:ENST00000425658.1:ENST00000378593.6:ENST00000491831.5:ENST00000465484.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	68	2	3.81894	4.589445	5.35995	7.54256e-4	1.96038e-4	0.0251179	0.0122528
chr1	179208951	179209051	592872	0	-	0.34	(0.32,0.35]	chr1	71074	660	INTRON	INTRON	ABL2	ENSG00000143322.21	ENST00000502732.6:ENST00000367623.8:ENST00000507173.5:ENST00000511413.5:ENST00000668691.1:ENST00000392043.4:ENST00000660584.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	80	2	3.20216	4.5893250000000005	5.97649	0.00480708	3.1737e-5	0.0602209	0.00449886
chr17	76179381	76179481	6841083	0	-	0.5	(0.476,0.515]	chr17	676689	52	INTRON	INTRON	RNF157	ENSG00000141576.16	ENST00000647930.1:ENST00000269391.11:ENST00000319945.10	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	3.97201	4.589230000000001	5.20645	0.030904	0.00136049	0.143385	0.0336321
chr17	82761080	82761178	6694287	0	+	0.479592	(0.476,0.515]	chr17	654822	11	INTRON	INTRON	TBCD	ENSG00000141556.22	ENST00000682479.1:ENST00000682722.1:ENST00000684464.1:ENST00000684544.1:ENST00000681983.1:ENST00000684361.1:ENST00000683184.1:ENST00000683282.1:ENST00000684408.1:ENST00000355528.9:ENST00000683444.1:ENST00000684776.1:ENST00000683041.1:ENST00000684760.1:ENST00000684349.1:ENST00000682213.1:ENST00000683009.1:ENST00000682921.1:ENST00000682107.1:ENST00000539345.6:ENST00000684000.1:ENST00000684188.1:ENST00000684429.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	36	2	3.97201	4.589230000000001	5.20645	0.030904	0.00136049	0.143385	0.0336321
chr19	3540819	3540916	7117682	0	-	0.484536	(0.476,0.515]	chr19	715736	9	INTRON	INTRON	MFSD12	ENSG00000161091.14	ENST00000615073.4:ENST00000398558.8:ENST00000589157.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	36	2	3.97201	4.589230000000001	5.20645	0.030904	0.00136049	0.143385	0.0336321
chr10	50415065	50415165	4618596	0	-	0.49	(0.476,0.515]	chr10	425422	704	INTRON	INTRON	SGMS1	ENSG00000198964.14	ENST00000429490.5:ENST00000361781.7:ENST00000619438.4:ENST00000492601.2:ENST00000609445.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	68	2	3.40003	4.589180000000001	5.77833	0.00139193	1.24749e-4	0.0341261	0.010049
chr16	89542379	89542479	6420702	0	+	0.42	(0.408,0.44]	chr16	616268	1	SS5_PROX	SS5_PROX:INTRON	SPG7	ENSG00000197912.16	ENST00000647079.1:ENST00000646303.1:ENST00000643649.1:ENST00000644498.1:ENST00000645897.1:ENST00000643668.1:ENST00000644225.1:ENST00000645818.2:ENST00000645977.1:ENST00000645063.1:ENST00000646263.1:ENST00000643724.1:ENST00000644781.1:ENST00000644901.1:ENST00000645042.1:ENST00000646531.1:ENST00000646930.1:ENST00000644210.1:ENST00000646589.1:ENST00000268704.7:ENST00000646826.1:ENST00000646716.1:ENST00000643345.1:ENST00000646958.1:ENST00000643105.1:ENST00000645354.1:ENST00000642334.1:ENST00000647227.1:ENST00000646445.1:ENST00000643954.1:ENST00000646399.1:ENST00000644671.1:ENST00000644748.1:ENST00000643496.1:ENST00000647032.1:ENST00000644751.1:ENST00000642427.1:ENST00000643370.1:ENST00000645886.1:ENST00000646454.1:ENST00000561945.2:ENST00000644171.1:ENST00000566682.2:ENST00000645258.1:ENST00000644044.1:ENST00000642263.1:ENST00000644556.1:ENST00000645842.1:ENST00000643734.1:ENST00000642814.1:ENST00000644061.1:ENST00000643350.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	90	2	3.09037	4.58901	6.08765	5.47766e-4	3.51008e-5	0.0212924	0.00499276
chr20	41035144	41035244	7273569	0	+	0.41	(0.408,0.44]	chr20	739216	53	INTRON	INTRON	TOP1	ENSG00000198900.7	ENST00000361337.3:ENST00000681113.1:ENST00000681058.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	93	2	3.60828	4.589005	5.56973	3.81714e-4	3.18952e-5	0.0181283	0.00450719
chr18	13046977	13047075	6877143	0	+	0.316327	(0.28,0.32]	chr18	681428	43	INTRON	INTRON	CEP192	ENSG00000101639.19	ENST00000325971.12:ENST00000506447.5:ENST00000589596.5:ENST00000513432.5:ENST00000511820.6:ENST00000510237.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	104	2	3.27221	4.588815	5.90542	3.92169e-4	3.15212e-4	0.0184748	0.0159645
chr1	45639011	45639111	440100	0	-	0.25	[0,0.28]	chr1	53319	34	INTRON	INTRON	GPBP1L1	ENSG00000159592.11	ENST00000290795.7:ENST00000355105.8	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.46726	4.588715	4.71017	0.0427997	0.0114708	0.148082	0.0956037
chr17	59659401	59659499	6641969	0	+	0.255102	[0,0.28]	chr17	648563	2	INTRON	INTRON	CLTC	ENSG00000141367.12	ENST00000621829.4:ENST00000393043.5:ENST00000269122.8:ENST00000579456.5:ENST00000483176.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	36	2	4.46726	4.588715	4.71017	0.0427997	0.0114708	0.148082	0.0956037
chr2	95846164	95846263	1178214	0	-	0.212121	[0,0.28]	chr2	125722	87	INTRON	INTRON	ANKRD36C	ENSG00000174501.15	ENST00000612359.4	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.46726	4.588715	4.71017	0.0427997	0.0114708	0.148082	0.0956037
chr3	43514321	43514421	1674357	0	-	0.28	[0,0.28]	chr3	170972	812	INTRON	INTRON	ANO10	ENSG00000160746.13	ENST00000292246.8:ENST00000350459.8:ENST00000396091.7:ENST00000414522.6:ENST00000451430.6:ENST00000448045.1	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.46726	4.588715	4.71017	0.0427997	0.0114708	0.148082	0.0956037
chr3	138756379	138756479	1830712	0	-	0.26	[0,0.28]	chr3	184042	4	SS3_PROX	SS3_PROX:INTRON	PIK3CB	ENSG00000051382.9	ENST00000674063.1:ENST00000289153.6:ENST00000477593.5:ENST00000462898.5:ENST00000483968.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	36	2	4.46726	4.588715	4.71017	0.0427997	0.0114708	0.148082	0.0956037
chr3	177084095	177084194	1871301	0	-	0.262626	[0,0.28]	chr3	187380	38	INTRON	INTRON	TBL1XR1	ENSG00000177565.18	ENST00000457928.7:ENST00000430069.5:ENST00000673974.1:ENST00000631253.2:ENST00000352800.10:ENST00000422442.6:ENST00000428970.5:ENST00000424913.5:ENST00000437738.5:ENST00000431421.5:ENST00000635794.1:ENST00000630796.2:ENST00000450267.5:ENST00000630833.2:ENST00000431674.5:ENST00000422066.5:ENST00000443315.5:ENST00000627825.2:ENST00000427349.5:ENST00000413084.5:ENST00000637137.1:ENST00000491623.2:ENST00000637544.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	36	2	4.46726	4.588715	4.71017	0.0427997	0.0114708	0.148082	0.0956037
chr7	152346446	152346545	3680397	0	-	0.222222	[0,0.28]	chr7	341654	18	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000682301.1:ENST00000452749.2:ENST00000680867.1:ENST00000683800.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	37	2	4.20106	4.588625	4.97619	0.0695895	0.00535756	0.184298	0.0663076
chr15	50567691	50567790	6172045	0	-	0.252525	[0,0.28]	chr15	588187	55	INTRON	INTRON	TRPM7	ENSG00000092439.16	ENST00000561267.5:ENST00000646667.1:ENST00000560955.5:ENST00000561443.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	36	2	4.55618	4.58851	4.62084	0.0313633	0.0171034	0.13151	0.110899
chr2	95111424	95111522	1177514	0	-	0.255102	[0,0.28]	chr2	125649	10	INTRON	INTRON	MRPS5	ENSG00000289685.1	ENST00000272418.7:ENST00000345084.10:ENST00000695437.1:ENST00000695436.1:ENST00000695435.1:ENST00000695434.1:ENST00000695433.1:ENST00000695432.1:ENST00000695439.1:ENST00000461916.6:ENST00000475895.6:ENST00000695440.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	36	2	4.55618	4.58851	4.62084	0.0313633	0.0171034	0.13151	0.110899
chr5	32421799	32421898	2599099	0	-	0.262626	[0,0.28]	chr5	246966	13	INTRON	INTRON	ZFR	ENSG00000056097.16	ENST00000265069.13:ENST00000505366.1:ENST00000505204.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	36	2	4.55618	4.58851	4.62084	0.0313633	0.0171034	0.13151	0.110899
chr5	104105502	104105602	2441470	0	+	0.26	[0,0.28]	chr5	234410	2	INTRON	INTRON	LINC02163	ENSG00000251026.2	ENST00000662211.1:ENST00000666145.1	lncRNA	lncRNA	lncRNA	lncRNA	0	36	2	4.55618	4.58851	4.62084	0.0313633	0.0171034	0.13151	0.110899
chr8	86432533	86432629	3790168	0	+	0.25	[0,0.28]	chr8	351393	4	INTRON	INTRON	WWP1	ENSG00000123124.14	ENST00000517970.6:ENST00000265428.4:ENST00000518683.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	36	2	4.55618	4.58851	4.62084	0.0313633	0.0171034	0.13151	0.110899
chrX	136235743	136235843	7895886	0	-	0.25	[0,0.28]	chrX	803946	1	SS5_PROX	SS5_PROX:INTRON	MAP7D3	ENSG00000129680.16	ENST00000370661.5:ENST00000316077.14:ENST00000370663.9:ENST00000370660.3	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.55618	4.58851	4.62084	0.0313633	0.0171034	0.13151	0.110899
chr11	9146842	9146935	4907860	0	-	0.462366	(0.44,0.476]	chr11	460006	12	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	DENND5A	ENSG00000184014.9	ENST00000328194.8:ENST00000681203.1:ENST00000530780.2:ENST00000680358.1:ENST00000679999.1:ENST00000679458.1:ENST00000531747.2:ENST00000680470.1:ENST00000680599.1:ENST00000680554.1:ENST00000679745.1:ENST00000679926.1:ENST00000680252.1:ENST00000681425.1:ENST00000681158.1:ENST00000679460.1:ENST00000681371.1:ENST00000680791.1:ENST00000679568.1:ENST00000679446.1:ENST00000680294.1:ENST00000680742.1:ENST00000680885.1:ENST00000680576.1:ENST00000530044.5:ENST00000527700.5:ENST00000524446.2:ENST00000526707.5:ENST00000531580.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	90	2	3.05373	4.588480000000001	6.12323	6.56725e-4	2.60698e-5	0.0232396	0.0042231
chr19	55013625	55013725	7100294	0	+	0.45	(0.44,0.476]	chr19	712212	62	INTRON	INTRON	GP6-AS1	ENSG00000267265.6	ENST00000593060.5:ENST00000586845.1	lncRNA	lncRNA	lncRNA	lncRNA	2	90	2	3.05373	4.588480000000001	6.12323	6.56725e-4	2.60698e-5	0.0232396	0.0042231
chr1	148778640	148778740	547216	0	-	0.35	(0.32,0.35]	chr1	64249	4	SS5_PROX	SS5_PROX:INTRON	SEC22B3P	ENSG00000275140.1	ENST00000616023.1	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	0	34	2	4.45629	4.587994999999999	4.7197	0.0246089	0.00568521	0.12011	0.0678837
chr11	46764130	46764230	4947905	0	-	0.33	(0.32,0.35]	chr11	463697	1	INTRON	INTRON	CKAP5	ENSG00000175216.15	ENST00000529230.6:ENST00000312055.9:ENST00000354558.7:ENST00000533413.5:ENST00000526943.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	34	2	4.45629	4.587994999999999	4.7197	0.0246089	0.00568521	0.12011	0.0678837
chr15	74029030	74029128	6061366	0	+	0.326531	(0.32,0.35]	chr15	577071	7	INTRON	INTRON	PML	ENSG00000140464.20	ENST00000395135.7:ENST00000268058.8:ENST00000395132.6:ENST00000268059.10:ENST00000354026.10:ENST00000565898.5:ENST00000569477.5:ENST00000569965.5:ENST00000564428.5:ENST00000359928.8:ENST00000436891.7:ENST00000435786.6:ENST00000567543.5:ENST00000563500.5:ENST00000569161.1:ENST00000565239.5:ENST00000567606.5:ENST00000566068.1:ENST00000562086.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	34	2	4.45629	4.587994999999999	4.7197	0.0246089	0.00568521	0.12011	0.0678837
chr2	171039755	171039854	1262873	0	-	0.323232	(0.32,0.35]	chr2	133843	110	INTRON	INTRON	TLK1	ENSG00000198586.14	ENST00000431350.7:ENST00000360843.7:ENST00000359766.7:ENST00000521943.5:ENST00000434911.6:ENST00000409443.6:ENST00000413010.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	34	2	4.45629	4.587994999999999	4.7197	0.0246089	0.00568521	0.12011	0.0678837
chr6	169753472	169753569	3035887	0	+	0.340206	(0.32,0.35]	chr6	282927	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ERMARD	ENSG00000130023.16	ENST00000366773.8:ENST00000366772.6:ENST00000590711.5:ENST00000592367.5:ENST00000392095.8:ENST00000592315.5:ENST00000592745.5:ENST00000418781.7:ENST00000586341.5:ENST00000592580.5:ENST00000588437.5:ENST00000588451.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	34	2	4.45629	4.587994999999999	4.7197	0.0246089	0.00568521	0.12011	0.0678837
chr6	44430509	44430609	2873357	0	+	0.41	(0.408,0.44]	chr6	272707	2	INTRON	INTRON	CDC5L	ENSG00000096401.8	ENST00000371477.4	protein_coding	protein_coding	protein_coding	protein_coding	1	73	2	3.20034	4.58798	5.97562	0.00398025	1.24941e-5	0.0549214	0.00263887
chr3	37254576	37254675	1395867	0	+	0.545455	(0.515,0.57]	chr3	146319	27	INTRON	INTRON	GOLGA4	ENSG00000144674.17	ENST00000435830.6:ENST00000444882.5:ENST00000356847.8:ENST00000450863.6:ENST00000361924.7:ENST00000429018.5:ENST00000431105.1:ENST00000419177.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	62	2	3.84625	4.58791	5.32957	4.06834e-4	1.34155e-4	0.0185763	0.00998237
chr12	28291660	28291760	5101292	0	+	0.33	(0.32,0.35]	chr12	481941	226	INTRON	INTRON	CCDC91	ENSG00000123106.11	ENST00000540794.5:ENST00000538586.5:ENST00000536154.5:ENST00000535520.5:ENST00000539107.5:ENST00000544649.5:ENST00000545336.5:ENST00000536442.6:ENST00000543534.5:ENST00000543809.5:ENST00000545737.5:ENST00000381259.5:ENST00000540401.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	34	2	4.55661	4.58775	4.61889	0.0166646	0.00927858	0.102621	0.0855292
chr14	101912625	101912712	5820039	0	+	0.344828	(0.32,0.35]	chr14	551941	1	SS5_PROX	SS5_PROX:INTRON	PPP2R5C	ENSG00000078304.20	ENST00000694906.1:ENST00000422945.6:ENST00000328724.9:ENST00000350249.7:ENST00000334743.9:ENST00000555237.5:ENST00000557071.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	34	2	4.55661	4.58775	4.61889	0.0166646	0.00927858	0.102621	0.0855292
chr19	2321519	2321599	7115767	0	-	0.3375	(0.32,0.35]	chr19	715300	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	LSM7	ENSG00000130332.15	ENST00000587502.2:ENST00000585409.2:ENST00000252622.15:ENST00000585395.6:ENST00000589532.5:ENST00000591515.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	34	2	4.55661	4.58775	4.61889	0.0166646	0.00927858	0.102621	0.0855292
chr6	129677368	129677468	3218481	0	-	0.35	(0.32,0.35]	chr6	299131	350	INTRON	INTRON	ARHGAP18	ENSG00000146376.11	ENST00000368149.3	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.55661	4.58775	4.61889	0.0166646	0.00927858	0.102621	0.0855292
chr10	993159	993257	4379041	0	+	0.438776	(0.408,0.44]	chr10	403823	1	INTRON	INTRON	GTPBP4	ENSG00000107937.19	ENST00000360803.9:ENST00000491635.1:ENST00000360059.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	71	2	3.14706	4.587745	6.02843	0.00382411	4.71156e-5	0.0562562	0.00593131
chr15	57126893	57126993	6034202	0	+	0.25	[0,0.28]	chr15	574697	81	INTRON	INTRON	TCF12	ENSG00000140262.18	ENST00000438423.6:ENST00000267811.9:ENST00000333725.10:ENST00000560190.5:ENST00000559609.5:ENST00000557843.5:ENST00000557947.5:ENST00000561152.1:ENST00000561346.5:ENST00000559216.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	37	2	4.28915	4.5877	4.88625	0.0319595	0.0173315	0.14477	0.104099
chr6	36605014	36605112	2854531	0	+	0.27551	[0,0.28]	chr6	269799	32	UTR3	UTR3:EXON_MRNA	SRSF3	ENSG00000112081.17	ENST00000373715.11	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	4.28915	4.5877	4.88625	0.0319595	0.0173315	0.14477	0.104099
chr7	22619619	22619719	3499567	0	-	0.23	[0,0.28]	chr7	326644	465	INTRON	INTRON	STEAP1B	ENSG00000105889.16	ENST00000439708.1:ENST00000442252.1:ENST00000650428.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	37	2	4.28915	4.5877	4.88625	0.0319595	0.0173315	0.14477	0.104099
chr7	45013239	45013339	3316041	0	+	0.27	[0,0.28]	chr7	308173	125	INTRON	INTRON	CCM2	ENSG00000136280.17	ENST00000461377.5:ENST00000544363.5:ENST00000541586.5:ENST00000478582.5:ENST00000258781.11:ENST00000488727.5:ENST00000648329.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	37	2	4.28915	4.5877	4.88625	0.0319595	0.0173315	0.14477	0.104099
chr14	69767637	69767709	5777162	0	+	0.680556	(0.57,1]	chr14	547342	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SRSF5	ENSG00000100650.16	ENST00000553521.5:ENST00000554465.5:ENST00000394366.6:ENST00000553369.5:ENST00000553548.5:ENST00000557435.1:ENST00000557154.6:ENST00000553635.5:ENST00000556184.5:ENST00000557460.5:ENST00000556587.5:ENST00000555547.5:ENST00000556436.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	62	2	3.6423	4.58756	5.53282	1.26117e-5	7.64124e-6	0.00281675	0.00197283
chr5	177328970	177329070	2777372	0	-	0.6	(0.57,1]	chr5	261667	108	INTRON	INTRON	LMAN2	ENSG00000169223.16	ENST00000694903.1	protein_coding	processed_transcript	protein_coding	processed_transcript	3	70	2	3.14233	4.5874749999999995	6.03262	4.99296e-5	3.89657e-7	0.00578948	3.48202e-4
chr22	17767924	17768023	7548173	0	-	0.30303	(0.28,0.32]	chr22	771498	174	INTRON	INTRON	BID	ENSG00000015475.19	ENST00000622694.5:ENST00000317361.11:ENST00000614949.4:ENST00000399765.5:ENST00000399767.6:ENST00000342111.9:ENST00000551952.5:ENST00000550946.5:ENST00000473439.5:ENST00000552886.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	37	2	4.12807	4.586930000000001	5.04579	0.0338135	0.00714672	0.146709	0.0723634
chr12	6499122	6499222	5069270	0	+	0.35	(0.32,0.35]	chr12	478656	35	INTRON	INTRON	NCAPD2	ENSG00000010292.13	ENST00000541399.1:ENST00000539714.5:ENST00000382457.8:ENST00000539084.5:ENST00000315579.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	35	2	4.17181	4.585515	4.99922	0.04531	0.00223907	0.149888	0.0435144
chr19	538544	538644	6991787	0	+	0.29	(0.28,0.32]	chr19	692123	10	INTRON	INTRON	CDC34	ENSG00000099804.9	ENST00000215574.9:ENST00000586283.6:ENST00000607527.5:ENST00000606065.3:ENST00000606400.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	104	2	3.29657	4.585405	5.87424	4.43011e-4	2.79563e-4	0.0194241	0.0148832
chr1	17424661	17424756	384834	0	-	0.452632	(0.44,0.476]	chr1	45481	15	INTRON	INTRON	RCC2	ENSG00000179051.14	ENST00000375436.9:ENST00000375433.3	protein_coding	protein_coding	protein_coding	protein_coding	3	195	2	4.22605	4.5854	4.94475	5.345e-7	5.34164e-7	4.25917e-4	3.94695e-4
chr19	11116446	11116535	7017103	0	+	0.438202	(0.408,0.44]	chr19	697479	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	LDLR	ENSG00000130164.14	ENST00000557933.5:ENST00000558518.6:ENST00000545707.5:ENST00000535915.5:ENST00000455727.6:ENST00000558013.5:ENST00000252444.9:ENST00000559340.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	91	2	2.94481	4.585335	6.22586	0.00110214	1.7283e-5	0.03038	0.00333191
chr7	152318830	152318929	3680117	0	-	0.30303	(0.28,0.32]	chr7	341641	31	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000684262.1:ENST00000682301.1:ENST00000452749.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	79	2	3.86904	4.585285	5.30153	0.00332518	2.33993e-4	0.0512081	0.0135358
chr1	70313344	70313444	480453	0	-	0.48	(0.476,0.515]	chr1	57747	2	SS5_PROX	SS5_PROX:INTRON	ANKRD13C	ENSG00000118454.13	ENST00000370944.9:ENST00000262346.6:ENST00000490846.5:ENST00000498735.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	33	2	4.24501	4.5851500000000005	4.92529	0.0247713	0.00180221	0.12011	0.0392772
chr1	99972122	99972220	170920	0	+	0.510204	(0.476,0.515]	chr1	18516	11	INTRON	INTRON	SLC35A3:ENSG00000283761	ENSG00000117620.15:ENSG00000283761.1	ENST00000638371.1:ENST00000427993.7:ENST00000533028.8:ENST00000639221.1:ENST00000639807.1:ENST00000638336.1:ENST00000638792.1:ENST00000638968.1:ENST00000465289.6:ENST00000640715.1:ENST00000640726.1:ENST00000639040.1:ENST00000639037.1:ENST00000639994.1:ENST00000640360.1:ENST00000640178.1:ENST00000638988.1:ENST00000640732.1:ENST00000638779.1:ENST00000638929.1:ENST00000639088.1:ENST00000640600.1:ENST00000638338.1:ENST00000639171.1:ENST00000638876.1:ENST00000640238.1:ENST00000370155.9:ENST00000640357.1:ENST00000370153.6:ENST00000532693.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	33	2	4.24501	4.5851500000000005	4.92529	0.0247713	0.00180221	0.12011	0.0392772
chr15	66443079	66443179	6049801	0	+	0.48	(0.476,0.515]	chr15	576049	4	SS3_PROX	SS3_PROX:INTRON	MAP2K1	ENSG00000169032.11	ENST00000425818.2:ENST00000689951.1:ENST00000685763.1:ENST00000307102.10:ENST00000691576.1:ENST00000686347.1:ENST00000691077.1:ENST00000687191.1:ENST00000691937.1:ENST00000692487.1:ENST00000685172.1:ENST00000692683.1:ENST00000684779.1:ENST00000693150.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	33	2	4.24501	4.5851500000000005	4.92529	0.0247713	0.00180221	0.12011	0.0392772
chr17	78109676	78109775	6844284	0	-	0.484848	(0.476,0.515]	chr17	677097	24	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TMC6	ENSG00000141524.18	ENST00000590602.6:ENST00000589217.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	33	2	4.24501	4.5851500000000005	4.92529	0.0247713	0.00180221	0.12011	0.0392772
chr19	3197354	3197450	6998961	0	+	0.5	(0.476,0.515]	chr19	694100	7	INTRON	INTRON	NCLN	ENSG00000125912.11	ENST00000590671.5:ENST00000246117.9:ENST00000588428.5	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.24501	4.5851500000000005	4.92529	0.0247713	0.00180221	0.12011	0.0392772
chr7	22986628	22986726	3501760	0	-	0.479592	(0.476,0.515]	chr7	326792	5	INTRON	INTRON	FAM126A	ENSG00000122591.13	ENST00000465661.2:ENST00000432176.7:ENST00000440481.6:ENST00000679826.1:ENST00000681402.1:ENST00000681237.1:ENST00000679789.1:ENST00000409923.5:ENST00000681766.1:ENST00000681079.1:ENST00000477349.5:ENST00000409763.1:ENST00000467005.6:ENST00000681468.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	33	2	4.24501	4.5851500000000005	4.92529	0.0247713	0.00180221	0.12011	0.0392772
chr9	111468108	111468208	4315130	0	-	0.45	(0.44,0.476]	chr9	396838	162	INTRON	INTRON	ECPAS	ENSG00000136813.15	ENST00000684092.1:ENST00000338205.9:ENST00000259335.8:ENST00000602447.5:ENST00000602978.1	protein_coding	protein_coding	protein_coding	protein_coding	3	109	2	3.22811	4.5848700000000004	5.94163	6.45088e-5	5.22147e-5	0.00711194	0.00590253
chr7	139257394	139257493	3436847	0	+	0.454545	(0.44,0.476]	chr7	320202	50	INTRON	INTRON	UBN2	ENSG00000157741.15	ENST00000486663.5:ENST00000473989.8	protein_coding	protein_coding	protein_coding	protein_coding	1	68	2	3.8666	4.58475	5.3029	0.00102616	1.50865e-4	0.029231300000000002	0.0106137
chr1	14371604	14371704	379885	0	-	0.32	(0.28,0.32]	chr1	44580	202	INTRON	INTRON	KAZN-AS1	ENSG00000234593.3	ENST00000666654.1:ENST00000661613.1:ENST00000665002.1:ENST00000657979.1:ENST00000447908.3	lncRNA	lncRNA	lncRNA	lncRNA	0	35	2	4.33765	4.58465	4.83165	0.039714	0.00527257	0.143072	0.0656295
chr12	31076765	31076862	5106240	0	+	0.28866000000000003	(0.28,0.32]	chr12	482160	21	INTRON	INTRON	DDX11	ENSG00000013573.17	ENST00000542838.6:ENST00000228264.10:ENST00000542129.5:ENST00000438391.6:ENST00000435753.6:ENST00000540935.5:ENST00000539049.5:ENST00000536265.5:ENST00000415475.6:ENST00000545668.5:ENST00000350437.8:ENST00000535158.5:ENST00000543756.5:ENST00000542244.5:ENST00000535317.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	35	2	4.33765	4.58465	4.83165	0.039714	0.00527257	0.143072	0.0656295
chr12	50456454	50456554	5136906	0	+	0.31	(0.28,0.32]	chr12	484429	16	INTRON	INTRON	LARP4	ENSG00000161813.23	ENST00000293618.12:ENST00000429001.7:ENST00000398473.7:ENST00000522085.5:ENST00000518444.5:ENST00000518561.5:ENST00000347328.9:ENST00000520064.2	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.33765	4.58465	4.83165	0.039714	0.00527257	0.143072	0.0656295
chr15	82398677	82398775	6075969	0	+	0.295918	(0.28,0.32]	chr15	578731	64	INTRON	INTRON	UBE2Q2P2	ENSG00000259429.5	ENST00000618775.4:ENST00000613592.4	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	35	2	4.33765	4.58465	4.83165	0.039714	0.00527257	0.143072	0.0656295
chr11	68516842	68516940	4817896	0	+	0.316327	(0.28,0.32]	chr11	448919	13	INTRON	INTRON	PPP6R3	ENSG00000110075.15	ENST00000530427.5:ENST00000528635.5:ENST00000529907.5:ENST00000533127.5:ENST00000534534.5:ENST00000529344.5:ENST00000524845.5:ENST00000393800.7:ENST00000265637.8:ENST00000524904.5:ENST00000393801.7:ENST00000265636.9:ENST00000529710.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	77	2	3.65016	4.58442	5.51868	0.00162747	6.39301e-4	0.0367966	0.0228666
chr16	69989555	69989655	6508930	0	-	0.34	(0.32,0.35]	chr16	630261	2	SS5_PROX	SS5_PROX:INTRON	PDXDC2P-NPIPB14P	ENSG00000196696.13	ENST00000531894.5:ENST00000530079.5	lncRNA	lncRNA	lncRNA	lncRNA	0	35	2	4.27113	4.584405	4.89768	0.0199982	0.00793135	0.120668	0.076155
chr22	37856822	37856918	7511765	0	+	0.333333	(0.32,0.35]	chr22	767173	8	INTRON	INTRON	EIF3L	ENSG00000100129.18	ENST00000412331.6:ENST00000624234.3:ENST00000439997.5:ENST00000381683.10:ENST00000476955.5:ENST00000652021.1:ENST00000436452.6:ENST00000414316.5:ENST00000477256.5:ENST00000406934.5:ENST00000451427.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	35	2	4.27113	4.584405	4.89768	0.0199982	0.00793135	0.120668	0.076155
chr5	177143701	177143801	2553799	0	+	0.33	(0.32,0.35]	chr5	243927	64	INTRON	INTRON	NSD1	ENSG00000165671.22	ENST00000508896.6:ENST00000689549.1:ENST00000354179.9:ENST00000686993.1:ENST00000689326.1:ENST00000439151.7:ENST00000510954.6:ENST00000689345.1:ENST00000347982.9:ENST00000687453.1:ENST00000685206.1:ENST00000638627.3:ENST00000644863.2:ENST00000688613.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	35	2	4.27113	4.584405	4.89768	0.0199982	0.00793135	0.120668	0.076155
chr7	75919984	75920082	3338943	0	+	0.336735	(0.32,0.35]	chr7	310880	9	INTRON	INTRON	POR	ENSG00000127948.16	ENST00000453773.5:ENST00000439963.5:ENST00000448410.5:ENST00000461988.6:ENST00000471238.5:ENST00000421059.1:ENST00000394893.5:ENST00000412521.5:ENST00000414186.5:ENST00000432753.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	35	2	4.27113	4.584405	4.89768	0.0199982	0.00793135	0.120668	0.076155
chr7	102570224	102570324	3588857	0	-	0.43	(0.408,0.44]	chr7	335051	3	SS3_PROX	SS3_PROX:INTRON	POLR2J3	ENSG00000168255.20:ENSG00000285437.2	ENST00000489144.5:ENST00000464525.5:ENST00000379340.9:ENST00000486319.5:ENST00000513506.6:ENST00000508848.5:ENST00000506060.5:ENST00000502415.5:ENST00000507355.5:ENST00000608621.5:ENST00000511313.5:ENST00000504157.5:ENST00000508910.5:ENST00000621093.4:ENST00000443430.2:ENST00000513438.1:ENST00000504101.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	36	2	3.97679	4.584405	5.19202	0.0299485	0.0016671	0.142135	0.0369207
chrX	24066979	24067075	7630862	0	+	0.333333	(0.32,0.35]	chrX	781475	5	INTRON	INTRON	EIF2S3	ENSG00000130741.11	ENST00000253039.9	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.27113	4.584405	4.89768	0.0199982	0.00793135	0.120668	0.076155
chr12	70266761	70266860	5166665	0	+	0.313131	(0.28,0.32]	chr12	489374	221	INTRON	INTRON	CNOT2	ENSG00000111596.14	ENST00000547780.5:ENST00000418359.7:ENST00000552319.5:ENST00000550160.5:ENST00000551661.5:ENST00000551132.5:ENST00000553078.5:ENST00000548021.5:ENST00000550641.6:ENST00000229195.8:ENST00000552915.5:ENST00000549443.5:ENST00000548741.5:ENST00000552483.5:ENST00000552422.5:ENST00000551179.1:ENST00000547321.5:ENST00000553020.5:ENST00000548159.5:ENST00000549750.5:ENST00000551043.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	36	2	4.14214	4.5844000000000005	5.02666	0.0579756	0.0027935	0.167723	0.0488769
chr2	15347206	15347306	1070990	0	-	0.31	(0.28,0.32]	chr2	114279	161	INTRON	INTRON	NBAS	ENSG00000151779.13	ENST00000281513.10:ENST00000442506.5	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.14214	4.5844000000000005	5.02666	0.0579756	0.0027935	0.167723	0.0488769
chr6	38838242	38838342	2861660	0	+	0.32	(0.28,0.32]	chr6	270472	2	SS5_PROX	SS5_PROX:INTRON	DNAH8	ENSG00000124721.18	ENST00000327475.11:ENST00000449981.6:ENST00000359357.7	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.14214	4.5844000000000005	5.02666	0.0579756	0.0027935	0.167723	0.0488769
chr10	21553498	21553596	4404603	0	+	0.5	(0.476,0.515]	chr10	406433	12	INTRON	INTRON	MLLT10	ENSG00000078403.17	ENST00000651097.1:ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000377100.8:ENST00000377091.7:ENST00000650772.1:ENST00000651298.1:ENST00000652497.1:ENST00000495130.5:ENST00000377059.7:ENST00000621220.4:ENST00000476557.5:ENST00000462999.5:ENST00000430455.2:ENST00000479634.1:ENST00000480415.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	33	2	4.32915	4.584385	4.83962	0.0124637	0.00480934	0.0973643	0.0602209
chr3	10087764	10087856	1362839	0	+	0.5	(0.476,0.515]	chr3	143602	1	INTRON	INTRON	FANCD2	ENSG00000144554.13	ENST00000287647.7:ENST00000676013.1:ENST00000675286.1:ENST00000419585.5:ENST00000681997.1:ENST00000683263.1:ENST00000421731.5:ENST00000683933.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	33	2	4.32915	4.584385	4.83962	0.0124637	0.00480934	0.0973643	0.0602209
chr11	63759191	63759291	4800705	0	+	0.37	(0.35,0.378]	chr11	444991	9	UTR3	UTR3:EXON_MRNA	RTN3	ENSG00000133318.14	ENST00000341307.6:ENST00000356000.7:ENST00000339997.8:ENST00000537981.5:ENST00000377819.10	protein_coding	protein_coding	protein_coding	protein_coding	5	144	2	2.73593	4.584255	6.43258	1.56828e-4	1.17308e-5	0.0107349	0.00271029
chr1	8701456	8701555	372620	0	-	0.30303	(0.28,0.32]	chr1	43541	447	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000656437.1:ENST00000659924.1:ENST00000480342.5:ENST00000468247.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	35	2	4.4334	4.5840700000000005	4.73474	0.0163355	0.0162835	0.109464	0.101453
chr12	112076988	112077087	5415101	0	-	0.292929	(0.28,0.32]	chr12	517213	8	INTRON	INTRON	NAA25	ENSG00000111300.10	ENST00000261745.9:ENST00000552527.5:ENST00000549711.5:ENST00000551858.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	35	2	4.4334	4.5840700000000005	4.73474	0.0163355	0.0162835	0.109464	0.101453
chr14	101998821	101998916	5820588	0	+	0.305263	(0.28,0.32]	chr14	552058	12	INTRON	INTRON	DYNC1H1	ENSG00000197102.14	ENST00000360184.10:ENST00000684561.1:ENST00000680313.1:ENST00000679720.1:ENST00000680715.1:ENST00000681283.1:ENST00000681822.1:ENST00000679910.1:ENST00000681574.1:ENST00000645039.2:ENST00000645149.2:ENST00000680200.1:ENST00000680120.1:ENST00000644881.2:ENST00000681066.1:ENST00000680423.1:ENST00000681536.1:ENST00000679486.1:ENST00000681010.1:ENST00000679629.1:ENST00000681123.1:ENST00000680874.1:ENST00000680137.1:ENST00000643508.2:ENST00000680808.1:ENST00000681311.1:ENST00000681859.1:ENST00000643684.1:ENST00000643958.2:ENST00000680001.1:ENST00000681668.1:ENST00000645114.2:ENST00000681751.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	35	2	4.4334	4.5840700000000005	4.73474	0.0163355	0.0162835	0.109464	0.101453
chr19	32483030	32483129	7049569	0	+	0.282828	(0.28,0.32]	chr19	702923	9	UTR3	UTR3:EXON_MRNA	DPY19L3	ENSG00000178904.19	ENST00000392250.7:ENST00000586987.5:ENST00000342179.9:ENST00000588648.7:ENST00000592142.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	35	2	4.4334	4.5840700000000005	4.73474	0.0163355	0.0162835	0.109464	0.101453
chr21	44782787	44782886	7468537	0	-	0.292929	(0.28,0.32]	chr21	761162	32	INTRON	INTRON	UBE2G2	ENSG00000184787.19	ENST00000345496.7:ENST00000497630.5:ENST00000477954.5:ENST00000491513.5:ENST00000330942.9:ENST00000478200.1:ENST00000497664.5:ENST00000462569.5:ENST00000490450.5:ENST00000496395.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	35	2	4.4334	4.5840700000000005	4.73474	0.0163355	0.0162835	0.109464	0.101453
chr6	8018256	8018355	3054090	0	-	0.313131	(0.28,0.32]	chr6	284067	3	INTRON	INTRON	BLOC1S5	ENSG00000188428.20	ENST00000397457.7:ENST00000244777.6:ENST00000627748.2:ENST00000486432.1:ENST00000543936.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	35	2	4.4334	4.5840700000000005	4.73474	0.0163355	0.0162835	0.109464	0.101453
chr7	64924625	64924722	3321305	0	+	0.309278	(0.28,0.32]	chr7	308800	3	INTRON	INTRON	ZNF273	ENSG00000198039.12	ENST00000527278.5:ENST00000476120.2:ENST00000395375.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	35	2	4.4334	4.5840700000000005	4.73474	0.0163355	0.0162835	0.109464	0.101453
chr10	72464213	72464313	4645295	0	-	0.45	(0.44,0.476]	chr10	427385	405	INTRON	INTRON	MICU1	ENSG00000107745.20	ENST00000361114.10:ENST00000476605.7:ENST00000642044.1:ENST00000635239.1:ENST00000418483.6:ENST00000398763.8:ENST00000489666.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	33	2	4.23755	4.583615	4.92968	0.0263357	0.00171443	0.122221	0.0381936
chr13	45514446	45514546	5481247	0	+	0.47	(0.44,0.476]	chr13	525177	22	INTRON	INTRON	COG3	ENSG00000136152.15	ENST00000349995.10	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.23755	4.583615	4.92968	0.0263357	0.00171443	0.122221	0.0381936
chr21	39302570	39302670	7465432	0	-	0.46	(0.44,0.476]	chr21	760568	36	INTRON	INTRON	BRWD1	ENSG00000185658.14	ENST00000333229.6:ENST00000342449.8:ENST00000380800.7:ENST00000341322.4:ENST00000470108.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	33	2	4.23755	4.583615	4.92968	0.0263357	0.00171443	0.122221	0.0381936
chr2	135724976	135725074	875924	0	+	0.306122	(0.28,0.32]	chr2	98042	8	UTR3	UTR3:EXON_MRNA	R3HDM1	ENSG00000048991.17	ENST00000683871.1:ENST00000409478.5:ENST00000264160.8:ENST00000410054.5:ENST00000628915.2:ENST00000429703.6	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.23719	4.58324	4.92929	0.0264147	0.0098607	0.133676	0.0838128
chr1	213087593	213087692	311067	0	+	0.424242	(0.408,0.44]	chr1	35919	94	INTRON	INTRON	RPS6KC1	ENSG00000136643.12	ENST00000615329.4:ENST00000543354.5:ENST00000614059.4:ENST00000543470.5:ENST00000366960.8:ENST00000366959.4:ENST00000490299.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	79	2	2.78122	4.58307	6.38492	0.015812	1.04342e-6	0.101453	5.86115e-4
chr10	45568975	45569074	4606907	0	-	0.575758	(0.57,1]	chr10	424363	154	INTRON	INTRON	MARCHF8	ENSG00000165406.16	ENST00000319836.7:ENST00000602712.2:ENST00000453980.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	25	2	4.49107	4.58275	4.67443	0.00220544	8.07515e-4	0.0417893	0.0258804
chr3	122471716	122471816	1801186	0	-	0.58	(0.57,1]	chr3	181026	39	INTRON	INTRON	KPNA1	ENSG00000114030.13	ENST00000344337.11:ENST00000485027.5:ENST00000494339.5:ENST00000465882.5:ENST00000482287.5:ENST00000476916.5:ENST00000493510.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	25	2	4.49107	4.58275	4.67443	0.00220544	8.07515e-4	0.0417893	0.0258804
chr3	184363674	184363774	1582699	0	+	0.58	(0.57,1]	chr3	163751	1	SS5_PROX	SS5_PROX:INTRON	POLR2H	ENSG00000163882.10	ENST00000456318.6:ENST00000438240.5:ENST00000455712.5:ENST00000430783.5:ENST00000443489.5:ENST00000452961.5:ENST00000429568.1	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	4.49107	4.58275	4.67443	0.00220544	8.07515e-4	0.0417893	0.0258804
chr4	8470583	8470668	1924729	0	+	0.6	(0.57,1]	chr4	193279	1	SS3_PROX	SS3_PROX:INTRON	TRMT44	ENSG00000155275.19	ENST00000389737.5:ENST00000532477.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	25	2	4.49107	4.58275	4.67443	0.00220544	8.07515e-4	0.0417893	0.0258804
chr1	32149503	32149602	63869	0	+	0.464646	(0.44,0.476]	chr1	8075	61	INTRON	INTRON	KPNA6	ENSG00000025800.14	ENST00000373625.8:ENST00000471599.5:ENST00000469790.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	33	2	4.33346	4.582739999999999	4.83202	0.0120349	0.00525002	0.0962115	0.0633615
chr10	87904876	87904975	4483346	0	+	0.474747	(0.44,0.476]	chr10	412570	104	INTRON	INTRON	PTEN	ENSG00000171862.12	ENST00000688308.1:ENST00000693560.1:ENST00000371953.8:ENST00000688158.1:ENST00000686459.1:ENST00000688922.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	33	2	4.33346	4.582739999999999	4.83202	0.0120349	0.00525002	0.0962115	0.0633615
chr21	46259428	46259509	7471149	0	-	0.469136	(0.44,0.476]	chr21	761632	3	SS3_PROX	SS3_PROX:INTRON	MCM3AP	ENSG00000160294.11	ENST00000397708.1:ENST00000291688.6:ENST00000486937.5:ENST00000496607.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	33	2	4.33346	4.582739999999999	4.83202	0.0120349	0.00525002	0.0962115	0.0633615
chr9	92471757	92471857	4155904	0	+	0.47	(0.44,0.476]	chr9	379002	915	INTRON	INTRON	CENPP	ENSG00000188312.14	ENST00000375587.8	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.33346	4.582739999999999	4.83202	0.0120349	0.00525002	0.0962115	0.0633615
chr10	843749	843840	4541697	0	-	0.43956	(0.408,0.44]	chr10	419257	3	INTRON	INTRON	LARP4B	ENSG00000107929.16	ENST00000688365.1:ENST00000316157.8:ENST00000690516.1:ENST00000689323.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	67	2	3.59564	4.582685	5.56973	5.73354e-4	3.81714e-4	0.0217398	0.0181283
chr1	186326635	186326735	603891	0	-	0.23	[0,0.28]	chr1	71997	4	SS3_PROX	SS3_PROX:INTRON	TPR	ENSG00000047410.14	ENST00000367478.9	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.38387	4.582644999999999	4.78142	0.0501911	0.00943974	0.156383	0.0861183
chr11	46113421	46113521	4945172	0	-	0.22	[0,0.28]	chr11	463384	208	INTRON	INTRON	PHF21A	ENSG00000135365.17	ENST00000676320.1:ENST00000323180.10:ENST00000530587.6:ENST00000693049.1:ENST00000690620.1:ENST00000418153.6:ENST00000525676.6:ENST00000689695.1:ENST00000685188.1:ENST00000532883.5:ENST00000524497.5:ENST00000693122.1:ENST00000529734.5:ENST00000529782.5:ENST00000688222.1:ENST00000690039.1:ENST00000533757.5:ENST00000525438.5:ENST00000692265.1:ENST00000527782.5:ENST00000532010.5:ENST00000528893.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	36	2	4.38387	4.582644999999999	4.78142	0.0501911	0.00943974	0.156383	0.0861183
chr5	10415279	10415372	2318290	0	+	0.27957	[0,0.28]	chr5	224725	4	SS3_PROX	SS3_PROX:INTRON	MARCHF6	ENSG00000145495.16	ENST00000274140.10:ENST00000449913.6:ENST00000511802.5:ENST00000503788.5:ENST00000510792.1:ENST00000512449.5:ENST00000505253.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	36	2	4.38387	4.582644999999999	4.78142	0.0501911	0.00943974	0.156383	0.0861183
chr6	131686207	131686307	2960689	0	+	0.27	[0,0.28]	chr6	278344	3	SS5_PROX	SS5_PROX:INTRON	ENPP3	ENSG00000154269.15	ENST00000414305.5:ENST00000357639.8:ENST00000358229.6	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.38387	4.582644999999999	4.78142	0.0501911	0.00943974	0.156383	0.0861183
chr7	117052956	117053056	3386987	0	+	0.27	[0,0.28]	chr7	317151	296	INTRON	INTRON	ST7:ST7-OT4	ENSG00000004866.22:ENSG00000214188.9	ENST00000393446.6:ENST00000265437.9:ENST00000393451.7:ENST00000438863.5:ENST00000393449.5:ENST00000443979.5:ENST00000323984.8:ENST00000417919.5:ENST00000446490.5:ENST00000471110.5:ENST00000422922.5:ENST00000432298.5:ENST00000449366.5:ENST00000487459.5:ENST00000393443.5:ENST00000467538.5:ENST00000434836.5:ENST00000465133.5:ENST00000477742.5:ENST00000462544.1:ENST00000393444.7:ENST00000393447.8	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:nonsense_mediated_decay:lncRNA:processed_transcript	0	36	2	4.38387	4.582644999999999	4.78142	0.0501911	0.00943974	0.156383	0.0861183
chrX	44924984	44925084	7649120	0	+	0.26	[0,0.28]	chrX	782726	506	INTRON	INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000675440.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000621147.5:ENST00000475233.1:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	36	2	4.38387	4.582644999999999	4.78142	0.0501911	0.00943974	0.156383	0.0861183
chr16	87735434	87735533	6538364	0	-	0.676768	(0.57,1]	chr16	633530	44	INTRON	INTRON	KLHDC4	ENSG00000104731.14	ENST00000567298.5:ENST00000270583.10:ENST00000347925.9:ENST00000353170.9:ENST00000316853.10:ENST00000566349.5:ENST00000562155.5:ENST00000622456.4:ENST00000562261.1:ENST00000566661.5:ENST00000567513.1:ENST00000564484.5:ENST00000565328.5:ENST00000569747.5:ENST00000564396.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	25	2	4.56365	4.58263	4.60161	0.00142229	0.00129848	0.0340865	0.0333764
chr1	246422902	246423002	679878	0	-	0.27	[0,0.28]	chr1	79777	56	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000490107.6:ENST00000462422.5:ENST00000403792.7:ENST00000470863.1:ENST00000455277.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	36	2	4.47254	4.582225	4.69191	0.0269474	0.020991	0.123442	0.122348
chr10	70709377	70709477	4447694	0	+	0.25	[0,0.28]	chr10	410378	2	INTRON	INTRON	ADAMTS14	ENSG00000138316.11	ENST00000373207.2:ENST00000373208.5	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.47254	4.582225	4.69191	0.0269474	0.020991	0.123442	0.122348
chr14	53145490	53145589	5897354	0	-	0.262626	[0,0.28]	chr14	560092	413	INTRON	INTRON	DDHD1	ENSG00000100523.16	ENST00000395606.5:ENST00000612692.4:ENST00000673822.2:ENST00000357758.3:ENST00000674014.1:ENST00000323669.10:ENST00000673930.1:ENST00000556910.1:ENST00000557445.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	36	2	4.47254	4.582225	4.69191	0.0269474	0.020991	0.123442	0.122348
chr16	56454673	56454773	6359587	0	+	0.25	[0,0.28]	chr16	610348	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	OGFOD1	ENSG00000087263.17	ENST00000561646.5:ENST00000562150.5:ENST00000569802.5:ENST00000565682.5:ENST00000336111.9:ENST00000563733.5:ENST00000568172.1:ENST00000566157.6:ENST00000568397.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	36	2	4.47254	4.582225	4.69191	0.0269474	0.020991	0.123442	0.122348
chr19	21088529	21088628	7039579	0	+	0.252525	[0,0.28]	chr19	701882	41	INTRON	INTRON	ZNF714	ENSG00000160352.16	ENST00000616183.1:ENST00000596053.5:ENST00000618422.1:ENST00000456283.7:ENST00000613286.4:ENST00000425625.5:ENST00000618008.4:ENST00000610902.4:ENST00000620627.1:ENST00000600535.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	36	2	4.47254	4.582225	4.69191	0.0269474	0.020991	0.123442	0.122348
chr3	138728773	138728873	1830431	0	-	0.21	[0,0.28]	chr3	184011	137	INTRON	INTRON	PIK3CB	ENSG00000051382.9	ENST00000674063.1:ENST00000289153.6:ENST00000477593.5:ENST00000462898.5:ENST00000462294.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	36	2	4.47254	4.582225	4.69191	0.0269474	0.020991	0.123442	0.122348
chr4	78785008	78785108	1981471	0	+	0.26	[0,0.28]	chr4	198463	79	INTRON	INTRON	BMP2K	ENSG00000138756.19	ENST00000389010.7:ENST00000502613.3:ENST00000502871.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	36	2	4.47254	4.582225	4.69191	0.0269474	0.020991	0.123442	0.122348
chr4	1730486	1730586	1910224	0	+	0.58	(0.57,1]	chr4	191582	2	SS3_PROX	SS3_PROX:INTRON	TACC3	ENSG00000013810.21	ENST00000651472.1:ENST00000612220.5:ENST00000484651.5:ENST00000313288.9:ENST00000652770.1:ENST00000651251.1:ENST00000650779.1:ENST00000470136.2:ENST00000651817.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	46	2	3.69168	4.582224999999999	5.47277	2.1608e-4	1.12467e-5	0.0134537	0.0024806
chr11	9461176	9461276	4730091	0	+	0.67	(0.57,1]	chr11	437970	1	SS5_PROX	SS5_PROX:INTRON	ZNF143	ENSG00000166478.10	ENST00000531943.5:ENST00000396604.5:ENST00000530463.5:ENST00000533542.5:ENST00000532577.5:ENST00000396597.7:ENST00000438144.6:ENST00000396602.7:ENST00000496276.5:ENST00000526657.5:ENST00000299606.6:ENST00000534265.5:ENST00000412390.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	45	2	3.76536	4.5820099999999995	5.39866	1.35835e-4	2.7267e-5	0.0100405	0.00430583
chr20	38943615	38943714	7272596	0	+	0.292929	(0.28,0.32]	chr20	739060	11	INTRON	INTRON	FAM83D	ENSG00000101447.15	ENST00000619304.4:ENST00000619850.2	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.01002	4.581799999999999	5.15358	0.0434868	0.0052282	0.162255	0.0633615
chr1	40180228	40180327	80153	0	+	0.40404	(0.378,0.408]	chr1	10407	24	INTRON	INTRON	RLF	ENSG00000117000.9	ENST00000372771.5	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.31699	4.58163	4.84627	0.0250408	0.00254319	0.12011	0.0465056
chr16	70543748	70543842	6385348	0	+	0.382979	(0.378,0.408]	chr16	613917	16	INTRON	INTRON	SF3B3	ENSG00000189091.13	ENST00000302516.10:ENST00000572365.1:ENST00000567635.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	33	2	4.31699	4.58163	4.84627	0.0250408	0.00254319	0.12011	0.0465056
chr2	151434202	151434297	893456	0	+	0.378947	(0.378,0.408]	chr2	98920	6	INTRON	INTRON	RIF1	ENSG00000080345.18	ENST00000453091.6:ENST00000428287.6:ENST00000444746.7:ENST00000243326.9:ENST00000414861.6:ENST00000430328.6	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.31699	4.58163	4.84627	0.0250408	0.00254319	0.12011	0.0465056
chr3	150752565	150752664	1841893	0	-	0.393939	(0.378,0.408]	chr3	185277	95	INTRON	INTRON	SIAH2	ENSG00000181788.4	ENST00000312960.4:ENST00000482706.1	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.31699	4.58163	4.84627	0.0250408	0.00254319	0.12011	0.0465056
chr6	149746083	149746183	3246969	0	-	0.4	(0.378,0.408]	chr6	301707	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NUP43	ENSG00000120253.14	ENST00000340413.7:ENST00000367404.8:ENST00000403890.7:ENST00000367402.6:ENST00000543637.1:ENST00000463048.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	33	2	4.31699	4.58163	4.84627	0.0250408	0.00254319	0.12011	0.0465056
chr8	28134800	28134900	3722651	0	+	0.38	(0.378,0.408]	chr8	346080	20	INTRON	INTRON	ELP3	ENSG00000134014.17	ENST00000521015.5:ENST00000380353.8:ENST00000537665.2:ENST00000523687.5:ENST00000524103.5:ENST00000256398.13:ENST00000518112.5:ENST00000519261.5:ENST00000520110.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	33	2	4.31699	4.58163	4.84627	0.0250408	0.00254319	0.12011	0.0465056
chr17	50733360	50733460	6627106	0	+	0.52	(0.515,0.57]	chr17	647183	90	INTRON	INTRON	LUC7L3	ENSG00000108848.16	ENST00000625349.2:ENST00000508045.5:ENST00000508218.5:ENST00000509335.5:ENST00000506686.5:ENST00000393227.6:ENST00000504563.6:ENST00000505658.6:ENST00000240304.5:ENST00000508482.5:ENST00000505619.5:ENST00000510984.5:ENST00000507200.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	87	2	2.84387	4.5814900000000005	6.31911	0.0018149	5.57818e-7	0.0384415	4.00823e-4
chr15	83576841	83576941	6083285	0	+	0.29	(0.28,0.32]	chr15	579080	1	SS5_PROX	SS5_PROX:INTRON	SH3GL3	ENSG00000140600.17	ENST00000427482.7:ENST00000563901.5:ENST00000324537.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	104	2	3.32052	4.58145	5.84238	5.0114e-4	2.48191e-4	0.0206993	0.0139607
chr7	98883116	98883215	3359300	0	+	0.323232	(0.32,0.35]	chr7	313370	7	INTRON	INTRON	TRRAP	ENSG00000196367.14	ENST00000417523.5:ENST00000355540.7:ENST00000359863.8:ENST00000628380.2:ENST00000456197.2:ENST00000446306.7	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.36755	4.581185	4.79482	0.0300552	0.00447781	0.129138	0.0610799
chr8	8872700	8872800	3907401	0	-	0.35	(0.32,0.35]	chr8	358045	128	INTRON	INTRON	MFHAS1	ENSG00000147324.11	ENST00000276282.7	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.36755	4.581185	4.79482	0.0300552	0.00447781	0.129138	0.0610799
chr12	132665750	132665850	5448945	0	-	0.38	(0.378,0.408]	chr12	521787	3	SS3_PROX	SS3_PROX:INTRON	POLE	ENSG00000177084.18	ENST00000320574.10:ENST00000672742.1:ENST00000537064.5:ENST00000535270.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	33	2	4.42349	4.58094	4.73839	0.00992961	0.00837252	0.0877296	0.0774402
chr19	985138	985213	6993010	0	+	0.4	(0.378,0.408]	chr19	692446	2	INTRON	INTRON	WDR18	ENSG00000065268.11	ENST00000587001.6:ENST00000586317.2:ENST00000585809.6:ENST00000590397.5:ENST00000607440.5:ENST00000251289.9:ENST00000591985.6:ENST00000591997.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	33	2	4.42349	4.58094	4.73839	0.00992961	0.00837252	0.0877296	0.0774402
chr5	1321382	1321458	2564692	0	-	0.381579	(0.378,0.408]	chr5	245554	3	SS5_PROX	SS5_PROX:INTRON	CLPTM1L	ENSG00000049656.14	ENST00000320895.10:ENST00000507807.3:ENST00000503042.5:ENST00000630539.1:ENST00000503534.5:ENST00000515719.5:ENST00000506641.5:ENST00000511268.6:ENST00000512451.5:ENST00000507195.5:ENST00000505914.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	33	2	4.42349	4.58094	4.73839	0.00992961	0.00837252	0.0877296	0.0774402
chr2	96637606	96637685	1181196	0	-	0.670886	(0.57,1]	chr2	126534	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	KANSL3	ENSG00000114982.19	ENST00000354204.10:ENST00000431828.6:ENST00000487070.5:ENST00000420155.5:ENST00000670907.1:ENST00000666923.1:ENST00000597150.5:ENST00000444759.5:ENST00000452268.5:ENST00000448075.1:ENST00000416138.1:ENST00000418735.1:ENST00000475820.1:ENST00000478492.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	46	2	3.75165	4.580885	5.41012	1.54884e-4	1.66635e-5	0.0113252	0.00307972
chr11	66223333	66223432	4809415	0	+	0.545455	(0.515,0.57]	chr11	447395	17	INTRON	INTRON	PACS1	ENSG00000175115.13	ENST00000320580.9	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.399	4.5807199999999995	4.76244	0.00708863	0.00362147	0.0754923	0.0533855
chr14	94094349	94094449	5808233	0	+	0.54	(0.515,0.57]	chr14	550568	2	SS3_PROX	SS3_PROX:INTRON	IFI27L1	ENSG00000165948.11	ENST00000553350.5:ENST00000555523.6:ENST00000557600.5:ENST00000393115.7:ENST00000556381.5:ENST00000554166.5:ENST00000553664.1:ENST00000555341.5:ENST00000557218.5:ENST00000554544.5:ENST00000557066.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	31	2	4.399	4.5807199999999995	4.76244	0.00708863	0.00362147	0.0754923	0.0533855
chr16	81083351	81083448	6531138	0	-	0.525773	(0.515,0.57]	chr16	632717	5	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	ENSG00000260643:GCSH	ENSG00000260643.2:ENSG00000140905.11	ENST00000638948.1:ENST00000564536.2:ENST00000640370.1:ENST00000315467.9:ENST00000640150.1:ENST00000564386.6:ENST00000639689.1:ENST00000639169.1:ENST00000569885.6:ENST00000639137.1:ENST00000561801.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	31	2	4.399	4.5807199999999995	4.76244	0.00708863	0.00362147	0.0754923	0.0533855
chr19	45617203	45617278	7192587	0	-	0.533333	(0.515,0.57]	chr19	728284	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	EML2	ENSG00000125746.18	ENST00000589876.5:ENST00000587152.6:ENST00000245925.8:ENST00000586195.5:ENST00000588308.5:ENST00000536630.5:ENST00000587484.5:ENST00000592482.5:ENST00000590819.5:ENST00000399594.7:ENST00000590575.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	31	2	4.399	4.5807199999999995	4.76244	0.00708863	0.00362147	0.0754923	0.0533855
chr8	31103844	31103944	3728652	0	+	0.55	(0.515,0.57]	chr8	346622	25	INTRON	INTRON	WRN	ENSG00000165392.11	ENST00000650667.1:ENST00000298139.7:ENST00000521620.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	31	2	4.399	4.5807199999999995	4.76244	0.00708863	0.00362147	0.0754923	0.0533855
chr1	171795122	171795217	254483	0	+	0.336842	(0.32,0.35]	chr1	30336	2	INTRON	INTRON	METTL13	ENSG00000010165.20	ENST00000361735.4:ENST00000362019.7:ENST00000367737.9:ENST00000466643.1:ENST00000476386.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	34	2	4.46758	4.580690000000001	4.6938	0.0137794	0.0119306	0.0962115	0.0949306
chr15	58053227	58053326	6187417	0	-	0.333333	(0.32,0.35]	chr15	589786	148	INTRON	INTRON	ALDH1A2	ENSG00000128918.15	ENST00000537372.5:ENST00000249750.9:ENST00000347587.7:ENST00000430119.6:ENST00000558231.5:ENST00000558595.5:ENST00000558239.5:ENST00000557967.5:ENST00000558073.5:ENST00000559297.5:ENST00000560122.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	34	2	4.46758	4.580690000000001	4.6938	0.0137794	0.0119306	0.0962115	0.0949306
chr3	185774585	185774685	1885844	0	-	0.34	(0.32,0.35]	chr3	188573	759	INTRON	INTRON	IGF2BP2	ENSG00000073792.16	ENST00000382199.7:ENST00000346192.7:ENST00000457616.6:ENST00000421047.3:ENST00000461957.5:ENST00000493302.5:ENST00000466476.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	34	2	4.46758	4.580690000000001	4.6938	0.0137794	0.0119306	0.0962115	0.0949306
chr5	131468808	131468907	2717482	0	-	0.343434	(0.32,0.35]	chr5	255505	42	INTRON	INTRON	RAPGEF6	ENSG00000158987.22	ENST00000509018.6:ENST00000671916.1:ENST00000507093.5:ENST00000296859.10:ENST00000627212.2:ENST00000512052.5:ENST00000308008.10:ENST00000515170.5:ENST00000510071.5:ENST00000504919.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	34	2	4.46758	4.580690000000001	4.6938	0.0137794	0.0119306	0.0962115	0.0949306
chr9	5703881	5703981	4098053	0	+	0.33	(0.32,0.35]	chr9	373384	135	INTRON	INTRON	RIC1	ENSG00000107036.12	ENST00000251879.10:ENST00000414202.7:ENST00000418622.7:ENST00000545641.5	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.46758	4.580690000000001	4.6938	0.0137794	0.0119306	0.0962115	0.0949306
chrX	153914675	153914774	7911572	0	-	0.474747	(0.44,0.476]	chrX	805259	4	INTRON	INTRON	ARHGAP4	ENSG00000089820.16	ENST00000393721.5:ENST00000370028.7:ENST00000420383.5:ENST00000350060.10:ENST00000370016.5:ENST00000470209.5:ENST00000494302.5:ENST00000404127.6:ENST00000494813.5:ENST00000422918.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	74	2	3.81101	4.580665	5.35032	3.0729e-4	3.02713e-4	0.0161362	0.0155054
chr19	47154813	47154913	7084118	0	+	0.42	(0.408,0.44]	chr19	708775	3	SS3_PROX	SS3_PROX:INTRON	SAE1	ENSG00000142230.13	ENST00000594144.5:ENST00000597808.5:ENST00000413379.7:ENST00000600706.5:ENST00000270225.12:ENST00000598840.5:ENST00000414294.6:ENST00000660039.1:ENST00000664120.1:ENST00000596995.1:ENST00000392776.3:ENST00000659110.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	33	2	4.23096	4.5806000000000004	4.93024	0.0278028	0.00170369	0.123904	0.0381936
chr22	42945084	42945184	7597648	0	-	0.44	(0.408,0.44]	chr22	778182	326	INTRON	INTRON	PACSIN2	ENSG00000100266.19	ENST00000337959.8:ENST00000263246.8:ENST00000407585.5:ENST00000403744.7:ENST00000402229.5:ENST00000453643.5:ENST00000422336.5:ENST00000418133.5:ENST00000445706.5:ENST00000453079.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	33	2	4.23096	4.5806000000000004	4.93024	0.0278028	0.00170369	0.123904	0.0381936
chr6	80034584	80034684	2907890	0	+	0.41	(0.408,0.44]	chr6	274759	2	SS3_PROX	SS3_PROX:INTRON	TTK	ENSG00000112742.10	ENST00000509894.5:ENST00000230510.7:ENST00000369798.7	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.23096	4.5806000000000004	4.93024	0.0278028	0.00170369	0.123904	0.0381936
chr7	67309815	67309915	3329159	0	+	0.43	(0.408,0.44]	chr7	309497	1	SS5_PROX	SS5_PROX:INTRON	STAG3L4	ENSG00000106610.16	ENST00000416602.6:ENST00000689067.1:ENST00000691248.1:ENST00000689978.1:ENST00000687534.1:ENST00000647855.1:ENST00000689458.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	33	2	4.23096	4.5806000000000004	4.93024	0.0278028	0.00170369	0.123904	0.0381936
chr6	150190361	150190461	2997249	0	+	0.36	(0.35,0.378]	chr6	280443	465	INTRON	INTRON	PPP1R14C	ENSG00000198729.5	ENST00000361131.5	protein_coding	protein_coding	protein_coding	protein_coding	1	76	2	3.47933	4.58049	5.68165	0.0015613	9.36553e-5	0.0360352	0.00811835
chr2	111435407	111435507	1211204	0	-	0.52	(0.515,0.57]	chr2	128899	46	INTRON	INTRON	MIR4435-2HG	ENSG00000172965.17	ENST00000645030.2:ENST00000642191.1:ENST00000673798.1:ENST00000645051.2:ENST00000673649.1:ENST00000669658.1:ENST00000669917.1:ENST00000661559.1:ENST00000653687.1:ENST00000667670.1:ENST00000609220.2:ENST00000656760.1:ENST00000609902.6:ENST00000666683.1:ENST00000674070.1:ENST00000662335.1:ENST00000664422.1:ENST00000673775.1:ENST00000674092.1:ENST00000673958.1:ENST00000658936.1:ENST00000662635.1:ENST00000666204.1:ENST00000659458.1:ENST00000664443.1:ENST00000670295.1:ENST00000661655.1:ENST00000666390.1:ENST00000659079.1:ENST00000660442.1:ENST00000664009.1:ENST00000439362.6:ENST00000654473.1:ENST00000664999.1:ENST00000673728.1:ENST00000659791.1:ENST00000666144.1:ENST00000659933.1:ENST00000670715.1:ENST00000653568.1:ENST00000643013.1:ENST00000673866.1:ENST00000443467.6:ENST00000669875.1:ENST00000673653.1:ENST00000673988.1:ENST00000661945.1:ENST00000669515.1:ENST00000431385.6:ENST00000656416.1:ENST00000674037.1:ENST00000432818.5:ENST00000674013.1:ENST00000444301.5:ENST00000673964.1:ENST00000673845.1:ENST00000673756.1:ENST00000673960.1:ENST00000673804.1:ENST00000673632.1:ENST00000453478.2:ENST00000673937.1:ENST00000673654.1:ENST00000409569.2:ENST00000674087.1:ENST00000419736.5:ENST00000673840.1:ENST00000674045.1:ENST00000673821.1:ENST00000643766.1:ENST00000308604.5:ENST00000674026.1:ENST00000604981.5:ENST00000603310.5:ENST00000673894.1:ENST00000442293.5:ENST00000441075.1	lncRNA	lncRNA	lncRNA	lncRNA	3	171	2	4.01426	4.58032	5.14638	1.58196e-6	5.05105e-8	7.57532e-4	9.02735e-5
chr12	57067335	57067435	5336732	0	-	0.37	(0.35,0.378]	chr12	510361	22	INTRON	INTRON	NEMP1	ENSG00000166881.10	ENST00000300128.9:ENST00000379391.7:ENST00000554340.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	34	2	4.1971	4.5802	4.9633	0.0367539	0.00198929	0.138959	0.0411469
chr2	30243481	30243581	726008	0	+	0.37	(0.35,0.378]	chr2	83940	86	INTRON	INTRON	LBH	ENSG00000213626.13	ENST00000395323.9:ENST00000412933.5:ENST00000404397.5:ENST00000406087.5:ENST00000464412.5:ENST00000401506.1:ENST00000467242.1:ENST00000407930.2:ENST00000484150.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	34	2	4.1971	4.5802	4.9633	0.0367539	0.00198929	0.138959	0.0411469
chr16	18163549	18163648	6454270	0	-	0.343434	(0.32,0.35]	chr16	621964	121	INTRON	INTRON	ENSG00000260242	ENSG00000260242.1	ENST00000563866.1	lncRNA	lncRNA	lncRNA	lncRNA	1	73	2	3.45772	4.58006	5.7024	0.00128487	5.25722e-4	0.0333518	0.0210958
chr17	7225602	7225689	6718342	0	-	0.310345	(0.28,0.32]	chr17	658681	4	UTR3	UTR3:EXON_MRNA	DVL2	ENSG00000004975.12	ENST00000005340.10:ENST00000575458.5	protein_coding	protein_coding	protein_coding	protein_coding	1	81	2	3.02632	4.579745	6.13317	0.0071944	1.54938e-4	0.0756118	0.0113252
chr17	44062900	44063000	6778357	0	-	0.5	(0.476,0.515]	chr17	668123	223	INTRON	INTRON	LSM12	ENSG00000161654.10	ENST00000591247.6:ENST00000293406.8:ENST00000585388.2	protein_coding	protein_coding	protein_coding	protein_coding	1	67	2	3.70553	4.579715	5.4539	5.16081e-4	3.44823e-4	0.0208667	0.0165103
chr1	70308378	70308477	480403	0	-	0.434343	(0.408,0.44]	chr1	57746	17	INTRON	INTRON	ANKRD13C	ENSG00000118454.13	ENST00000370944.9:ENST00000262346.6:ENST00000490846.5:ENST00000498735.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	33	2	4.334	4.57965	4.8253	0.011982	0.0056738	0.0962115	0.0653997
chr7	92629078	92629178	3571179	0	-	0.41	(0.408,0.44]	chr7	332790	56	INTRON	INTRON	CDK6	ENSG00000105810.10	ENST00000424848.3:ENST00000265734.8	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.334	4.57965	4.8253	0.011982	0.0056738	0.0962115	0.0653997
chr1	235500496	235500595	664423	0	-	0.353535	(0.35,0.378]	chr1	78647	18	INTRON	INTRON	B3GALNT2	ENSG00000162885.14	ENST00000366600.8:ENST00000675193.1:ENST00000676288.1:ENST00000612859.4:ENST00000313984.3:ENST00000494378.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	70	2	3.58286	4.57925	5.57564	6.77448e-4	5.93654e-4	0.0236287	0.0225024
chr2	159610098	159610198	1252471	0	-	0.37	(0.35,0.378]	chr2	132736	539	INTRON	INTRON	BAZ2B	ENSG00000123636.19	ENST00000392782.5:ENST00000392783.7:ENST00000541068.6:ENST00000437839.5:ENST00000483316.1:ENST00000552327.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	34	2	4.29961	4.579155	4.8587	0.0158483	0.00695662	0.109464	0.0718189
chrX	119600384	119600483	7873058	0	-	0.363636	(0.35,0.378]	chrX	801774	74	INTRON	INTRON	NKRF	ENSG00000186416.18	ENST00000304449.8:ENST00000542113.3:ENST00000688521.1	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.29961	4.579155	4.8587	0.0158483	0.00695662	0.109464	0.0718189
chr10	131970099	131970188	4715774	0	-	0.606742	(0.57,1]	chr10	435200	2	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	BNIP3	ENSG00000176171.12	ENST00000368636.9:ENST00000540159.4:ENST00000633835.2	protein_coding	protein_coding	protein_coding	protein_coding	2	83	2	4.28563	4.57901	4.87239	5.27255e-6	4.15367e-8	0.00170345	8.25193e-5
chr16	30718866	30718965	6338861	0	+	0.383838	(0.378,0.408]	chr16	607790	20	INTRON	INTRON	SRCAP	ENSG00000080603.17	ENST00000262518.9:ENST00000395059.6:ENST00000483083.3	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.09379	4.5789550000000006	5.06412	0.023912	0.0030522	0.129075	0.0493883
chr11	63626356	63626455	4962363	0	-	0.333333	(0.32,0.35]	chr11	467121	24	UTR3	UTR3:EXON_MRNA	ATL3	ENSG00000184743.13	ENST00000398868.8	protein_coding	protein_coding	protein_coding	protein_coding	6	181	2	2.36449	4.578465	6.79244	0.00128072	2.64899e-7	0.0326846	2.53077e-4
chr3	46956812	46956912	1679831	0	-	0.51	(0.476,0.515]	chr3	171431	154	INTRON	INTRON	CCDC12	ENSG00000160799.12	ENST00000425441.5:ENST00000683445.1:ENST00000292314.6:ENST00000605358.5:ENST00000488069.5:ENST00000603885.5:ENST00000446836.5:ENST00000494655.5:ENST00000604164.5:ENST00000604181.1:ENST00000605875.1:ENST00000460035.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	95	2	3.0883	4.57845	6.0686	7.31567e-4	7.85791e-6	0.0248722	0.00201289
chr7	158660101	158660201	3688327	0	-	0.33	(0.32,0.35]	chr7	342172	13	INTRON	INTRON	NCAPG2	ENSG00000146918.20	ENST00000356309.8:ENST00000432615.5:ENST00000409423.5:ENST00000441982.5:ENST00000467785.5:ENST00000409339.3:ENST00000474940.5:ENST00000475918.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	74	2	3.82296	4.57757	5.33218	0.00204346	2.45656e-4	0.04086	0.0138769
chr2	32457034	32457134	731802	0	+	0.41	(0.408,0.44]	chr2	84399	27	INTRON	INTRON	BIRC6	ENSG00000115760.15	ENST00000421745.7:ENST00000648282.1	protein_coding	protein_coding	protein_coding	protein_coding	2	90	2	2.9826	4.577375	6.17215	9.23082e-4	2.28416e-5	0.0278392	0.00389868
chr21	39273775	39273873	7465135	0	-	0.326531	(0.32,0.35]	chr21	760518	30	INTRON	INTRON	BRWD1	ENSG00000185658.14	ENST00000333229.6:ENST00000342449.8:ENST00000380800.7:ENST00000430093.5:ENST00000445245.5:ENST00000445668.5:ENST00000412604.1:ENST00000455867.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	79	2	3.38612	4.5773600000000005	5.7686	0.00249604	8.9843e-5	0.0446195	0.0079464
chr15	64510356	64510456	6044587	0	+	0.45	(0.44,0.476]	chr15	575696	74	INTRON	INTRON	ZNF609	ENSG00000180357.10	ENST00000326648.5:ENST00000558680.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	89	2	3.31275	4.57711	5.84147	1.73222e-4	1.03947e-4	0.0114086	0.00915599
chr8	21988347	21988440	3711624	0	+	0.354839	(0.35,0.378]	chr8	344484	1	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	XPO7	ENSG00000130227.17	ENST00000252512.14:ENST00000433566.8:ENST00000518808.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	70	2	3.49967	4.576919999999999	5.65417	9.80974e-4	4.33402e-4	0.0287765	0.0190829
chr11	68557675	68557773	4818317	0	+	0.520408	(0.515,0.57]	chr11	448971	31	INTRON	INTRON	PPP6R3	ENSG00000110075.15	ENST00000534534.5:ENST00000524845.5:ENST00000393800.7:ENST00000265637.8:ENST00000524904.5:ENST00000393801.7:ENST00000265636.9:ENST00000529710.5:ENST00000527403.6	protein_coding	protein_coding	protein_coding	protein_coding	1	61	2	3.67453	4.5762599999999996	5.47799	3.27949e-4	2.09356e-4	0.0160995	0.0131276
chr2	134928365	134928465	872333	0	+	0.49	(0.476,0.515]	chr2	97663	81	INTRON	INTRON	CCNT2	ENSG00000082258.13	ENST00000419781.5:ENST00000446247.5:ENST00000264157.10:ENST00000452839.5:ENST00000295238.10:ENST00000475094.1:ENST00000417175.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	67	2	3.74433	4.57601	5.40769	6.23078e-4	2.85053e-4	0.0229151	0.0150568
chr1	108627287	108627384	177941	0	+	0.360825	(0.35,0.378]	chr1	19311	27	EXON_MRNA	EXON_MRNA:INTRON	FAM102B	ENSG00000162636.16	ENST00000405454.1:ENST00000370035.8:ENST00000483371.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	33	2	4.48184	4.575565	4.66929	0.0191702	0.00541617	0.108861	0.066545000000000007
chr3	75761137	75761237	1748138	0	-	0.36	(0.35,0.378]	chr3	177549	189	INTRON	INTRON	ZNF717	ENSG00000227124.11	ENST00000648506.1:ENST00000491507.1:ENST00000477374.5:ENST00000652011.2:ENST00000478296.5:ENST00000471541.2:ENST00000468296.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	33	2	4.48184	4.575565	4.66929	0.0191702	0.00541617	0.108861	0.066545000000000007
chr15	90962350	90962447	6102712	0	+	0.371134	(0.35,0.378]	chr15	581318	7	UTR3	UTR3:EXON_MRNA	RCCD1	ENSG00000166965.13	ENST00000394258.7	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.5655	4.575435000000001	4.58537	0.0155464	0.00703328	0.100909	0.0754576
chr5	66146580	66146680	2372510	0	+	0.37	(0.35,0.378]	chr5	228649	10	INTRON	INTRON	SREK1	ENSG00000153914.16	ENST00000521691.5:ENST00000612404.4:ENST00000523851.1:ENST00000334121.11:ENST00000520058.1:ENST00000520953.5:ENST00000522912.5:ENST00000524111.5:ENST00000380918.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	33	2	4.5655	4.575435000000001	4.58537	0.0155464	0.00703328	0.100909	0.0754576
chr8	67113304	67113390	3777131	0	+	0.360465	(0.35,0.378]	chr8	350325	1	SS3_PROX	SS3_PROX:INTRON	CSPP1	ENSG00000104218.16	ENST00000676113.1:ENST00000675306.2:ENST00000678156.1:ENST00000262210.11:ENST00000678017.1:ENST00000675869.1:ENST00000678542.1:ENST00000677619.1:ENST00000676605.1:ENST00000676471.1:ENST00000677256.1:ENST00000676847.1:ENST00000677009.1:ENST00000675820.1:ENST00000676317.1:ENST00000677592.1:ENST00000676573.1:ENST00000678318.1:ENST00000677473.1:ENST00000674993.1:ENST00000678553.1:ENST00000678204.1:ENST00000679226.1:ENST00000676882.1:ENST00000675955.1:ENST00000678728.1:ENST00000677430.1:ENST00000677455.1:ENST00000678616.1:ENST00000678362.1:ENST00000679112.1:ENST00000678645.1:ENST00000676567.1:ENST00000677845.1:ENST00000519163.6:ENST00000676858.1:ENST00000678747.1:ENST00000678821.1:ENST00000678744.1:ENST00000519668.1:ENST00000676697.1:ENST00000678216.1:ENST00000677855.1:ENST00000676695.1:ENST00000677836.1:ENST00000677070.1:ENST00000678444.1:ENST00000676534.1:ENST00000678138.1:ENST00000678807.1:ENST00000677052.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	33	2	4.5655	4.575435000000001	4.58537	0.0155464	0.00703328	0.100909	0.0754576
chr11	111865208	111865251	5042722	0	-	0.348837	(0.32,0.35]	chr11	474982	1	CDS_STOP	CDS_STOP:CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	ALG9	ENSG00000086848.15	ENST00000616540.5:ENST00000614444.4:ENST00000619129.4:ENST00000398006.6:ENST00000531154.5:ENST00000530851.6:ENST00000613181.4:ENST00000618252.1:ENST00000612489.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	99	2	3.41232	4.5752749999999995	5.73823	4.5635e-4	1.30505e-4	0.0196892	0.00983066
chr19	21405373	21405469	7040905	0	+	0.375	(0.35,0.378]	chr19	702023	2	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ZNF493	ENSG00000196268.12	ENST00000596302.5:ENST00000392288.7:ENST00000355504.4:ENST00000594390.5:ENST00000596815.1:ENST00000339914.6:ENST00000598152.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	94	2	3.35098	4.575225	5.79947	2.36402e-4	1.59604e-4	0.0140941	0.0108718
chr2	131092813	131092913	1229087	0	-	0.4	(0.378,0.408]	chr2	130995	2	SS5_PROX	SS5_PROX:INTRON	FAM168B	ENSG00000152102.18	ENST00000389915.4:ENST00000409185.5	protein_coding	protein_coding	protein_coding	protein_coding	1	69	2	3.86951	4.5749200000000005	5.28033	0.00143651	1.55755e-4	0.0340925	0.0106835
chr9	33841067	33841167	4110464	0	+	0.53	(0.515,0.57]	chr9	374686	101	INTRON	INTRON	UBE2R2	ENSG00000107341.5	ENST00000263228.4	protein_coding	protein_coding	protein_coding	protein_coding	1	61	2	3.71942	4.574805	5.43019	2.61221e-4	2.60422e-4	0.0148796	0.014326
chr7	24977785	24977885	3505803	0	-	0.49	(0.476,0.515]	chr7	327114	598	INTRON	INTRON	OSBPL3	ENSG00000070882.13	ENST00000313367.7:ENST00000415952.1	protein_coding	protein_coding	protein_coding	protein_coding	2	145	2	4.53875	4.57458	4.61041	6.10545e-6	1.88543e-6	0.00185549	8.35956e-4
chr1	108297916	108298015	176614	0	+	0.616162	(0.57,1]	chr1	19153	132	INTRON	INTRON	SLC25A24P1	ENSG00000241361.8	ENST00000411846.6:ENST00000434803.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	25	2	4.37136	4.57433	4.7773	0.00345135	5.07088e-4	0.0517761	0.0202328
chr10	102500700	102500800	4681855	0	-	0.58	(0.57,1]	chr10	432229	97	INTRON	INTRON	ACTR1A	ENSG00000138107.13	ENST00000636707.1:ENST00000369905.9:ENST00000487599.1:ENST00000481044.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	25	2	4.37136	4.57433	4.7773	0.00345135	5.07088e-4	0.0517761	0.0202328
chr7	155761613	155761713	3453084	0	+	0.36	(0.35,0.378]	chr7	322730	146	INTRON	INTRON	RBM33	ENSG00000184863.11	ENST00000401878.8:ENST00000392761.3:ENST00000438356.1:ENST00000341148.7	protein_coding	protein_coding	protein_coding	protein_coding	2	102	2	3.04873	4.5742449999999995	6.09976	0.00106752	1.03844e-5	0.0299955	0.00235262
chr10	130178151	130178249	4536756	0	+	0.418367	(0.408,0.44]	chr10	418830	27	INTRON	INTRON	GLRX3	ENSG00000108010.12	ENST00000331244.10:ENST00000481034.1:ENST00000368644.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	68	2	3.90311	4.574059999999999	5.24501	0.00137378	1.24325e-4	0.0336718	0.00952291
chr11	86257314	86257414	4842125	0	+	0.41	(0.408,0.44]	chr11	451760	4	SS3_PROX	SS3_PROX:INTRON	EED	ENSG00000074266.22	ENST00000263360.11:ENST00000528180.5:ENST00000672825.1:ENST00000673233.2:ENST00000327320.8:ENST00000351625.10:ENST00000534595.1:ENST00000525244.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	68	2	3.90311	4.574059999999999	5.24501	0.00137378	1.24325e-4	0.0336718	0.00952291
chr2	11252294	11252394	1067750	0	-	0.6	(0.57,1]	chr2	114079	21	INTRON	INTRON	ROCK2	ENSG00000134318.15	ENST00000315872.11:ENST00000261535.7:ENST00000431087.1:ENST00000462366.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	25	2	4.44366	4.573965	4.70427	0.00210922	9.25341e-4	0.0425419	0.0278396
chr3	11643815	11643915	1614221	0	-	0.62	(0.57,1]	chr3	166697	4	UTR5	UTR5:EXON_MRNA:INTRON	VGLL4	ENSG00000144560.16	ENST00000430365.7:ENST00000273038.7:ENST00000426568.5:ENST00000445411.5:ENST00000418000.5:ENST00000417206.6:ENST00000417466.5:ENST00000419541.4:ENST00000623028.1	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	4.44366	4.573965	4.70427	0.00210922	9.25341e-4	0.0425419	0.0278396
chr5	139275225	139275323	2499181	0	+	0.540816	(0.515,0.57]	chr5	238863	4	INTRON	INTRON	MATR3:SNHG4	ENSG00000280987.4:ENSG00000281398.4	ENST00000509990.5:ENST00000506147.5:ENST00000512107.5:ENST00000648842.1:ENST00000448190.6:ENST00000361059.7:ENST00000506188.5:ENST00000507692.5:ENST00000394800.6:ENST00000502929.5:ENST00000504203.5:ENST00000514694.5:ENST00000513259.5:ENST00000507197.5:ENST00000509644.5:ENST00000505016.2:ENST00000505522.6:ENST00000514110.5:ENST00000508735.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	0	32	2	4.17037	4.5737950000000005	4.97722	0.0139194	0.00168681	0.10247	0.0370386
chr1	28971139	28971239	59522	0	+	0.38	(0.378,0.408]	chr1	7621	560	INTRON	INTRON	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000647918.1:ENST00000646800.1:ENST00000644342.1:ENST00000646189.1:ENST00000482464.6:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000646260.1:ENST00000373798.5:ENST00000644600.1:ENST00000649674.1:ENST00000643173.1:ENST00000343067.9:ENST00000644780.1:ENST00000650265.1:ENST00000648181.1:ENST00000643604.1:ENST00000648891.1:ENST00000373797.2:ENST00000349460.9:ENST00000645184.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	68	2	3.72397	4.573775	5.42358	8.39231e-4	3.23378e-4	0.0266487	0.0159645
chrX	46881561	46881660	7653563	0	+	0.494949	(0.476,0.515]	chrX	783005	19	UTR3	UTR3:EXON_MRNA	RP2	ENSG00000102218.6	ENST00000218340.4	protein_coding	protein_coding	protein_coding	protein_coding	1	71	2	3.60627	4.57344	5.54061	7.49088e-4	1.30462e-4	0.0251179	0.00983066
chr12	122225031	122225125	5439707	0	-	0.521277	(0.515,0.57]	chr12	520192	4	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	DIABLO	ENSG00000184047.20	ENST00000443649.9:ENST00000650715.1:ENST00000464942.7:ENST00000353548.11:ENST00000644227.1:ENST00000644509.1:ENST00000342392.3:ENST00000645569.1:ENST00000267169.11:ENST00000540535.6:ENST00000541273.6:ENST00000541656.6:ENST00000446652.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	64	2	3.58064	4.573404999999999	5.56617	6.54693e-4	5.44229e-5	0.0233335	0.00603408
chrX	110067496	110067596	7700684	0	+	0.45	(0.44,0.476]	chrX	788139	1	SS5_PROX	SS5_PROX:INTRON	TMEM164	ENSG00000157600.12	ENST00000372072.7:ENST00000372073.5:ENST00000372068.7:ENST00000288381.4:ENST00000461715.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	67	2	3.41176	4.572795	5.73383	0.00130987	1.70474e-4	0.0333932	0.0119761
chr7	5207728	5207827	3272137	0	+	0.414141	(0.408,0.44]	chr7	304097	77	INTRON	INTRON	WIPI2	ENSG00000157954.15	ENST00000401525.7:ENST00000288828.9:ENST00000404704.7:ENST00000466014.5:ENST00000485854.5:ENST00000382384.6:ENST00000496867.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	96	2	3.0101	4.572775	6.13545	0.00109848	4.91945e-6	0.0304585	0.00150985
chr7	158649043	158649142	3688206	0	-	0.393939	(0.378,0.408]	chr7	342131	21	INTRON	INTRON	NCAPG2	ENSG00000146918.20	ENST00000356309.8:ENST00000432615.5:ENST00000409423.5:ENST00000441982.5:ENST00000467785.5:ENST00000409339.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	201	2	4.44967	4.57275	4.69583	3.28062e-6	1.15049e-7	0.00128575	1.51249e-4
chr15	89280170	89280270	6096108	0	+	0.48	(0.476,0.515]	chr15	580153	10	INTRON	INTRON	FANCI	ENSG00000140525.20	ENST00000674831.1:ENST00000300027.12:ENST00000310775.12:ENST00000696717.1:ENST00000676003.1:ENST00000696718.1:ENST00000447611.6:ENST00000696719.1:ENST00000565522.5:ENST00000561894.1:ENST00000566895.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	32	2	4.53023	4.572710000000001	4.61519	0.0119748	0.00528365	0.0899583	0.0656295
chr16	74586188	74586288	6525123	0	-	0.48	(0.476,0.515]	chr16	631842	230	INTRON	INTRON	GLG1	ENSG00000090863.12	ENST00000205061.9:ENST00000422840.7:ENST00000447066.6:ENST00000562090.5:ENST00000567951.5:ENST00000627032.2:ENST00000565260.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	32	2	4.53023	4.572710000000001	4.61519	0.0119748	0.00528365	0.0899583	0.0656295
chr3	179254981	179255080	1878207	0	-	0.484848	(0.476,0.515]	chr3	187618	35	INTRON	INTRON	KCNMB3	ENSG00000171121.17	ENST00000485523.5:ENST00000497599.5:ENST00000392686.6:ENST00000349697.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	32	2	4.53023	4.572710000000001	4.61519	0.0119748	0.00528365	0.0899583	0.0656295
chr6	134973610	134973710	3224634	0	-	0.5	(0.476,0.515]	chr6	299772	39	INTRON	INTRON	HBS1L	ENSG00000112339.15	ENST00000367837.10:ENST00000527578.5:ENST00000527005.5:ENST00000415177.6:ENST00000367826.6:ENST00000533274.5:ENST00000526100.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	32	2	4.53023	4.572710000000001	4.61519	0.0119748	0.00528365	0.0899583	0.0656295
chr7	105379649	105379749	3603813	0	-	0.48	(0.476,0.515]	chr7	336161	727	INTRON	INTRON	SRPK2	ENSG00000135250.17	ENST00000393651.8:ENST00000482897.5:ENST00000460391.5:ENST00000462282.5:ENST00000465112.5:ENST00000482862.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	32	2	4.53023	4.572710000000001	4.61519	0.0119748	0.00528365	0.0899583	0.0656295
chr7	134304304	134304404	3646049	0	-	0.5	(0.476,0.515]	chr7	338925	1	SS5_PROX	SS5_PROX:INTRON	SLC35B4	ENSG00000205060.11	ENST00000378509.9:ENST00000416907.5:ENST00000470969.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	32	2	4.53023	4.572710000000001	4.61519	0.0119748	0.00528365	0.0899583	0.0656295
chr1	8797078	8797178	373579	0	-	0.54	(0.515,0.57]	chr1	43555	41	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000656437.1:ENST00000659924.1	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.04086	4.5726700000000005	5.10448	0.0197045	0.0010345	0.120063	0.029231300000000002
chr10	86487729	86487829	4659022	0	-	0.55	(0.515,0.57]	chr10	429282	134	INTRON	INTRON	WAPL	ENSG00000062650.20	ENST00000298767.10	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.04086	4.5726700000000005	5.10448	0.0197045	0.0010345	0.120063	0.029231300000000002
chr5	119306388	119306488	2461974	0	+	0.53	(0.515,0.57]	chr5	235842	371	INTRON	INTRON	TNFAIP8	ENSG00000145779.8	ENST00000274456.6:ENST00000388882.5	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.04086	4.5726700000000005	5.10448	0.0197045	0.0010345	0.120063	0.029231300000000002
chr11	120338473	120338573	4876220	0	+	0.21	[0,0.28]	chr11	455798	8	INTRON	INTRON	ARHGEF12	ENSG00000196914.9	ENST00000397843.7:ENST00000356641.7	protein_coding	protein_coding	protein_coding	protein_coding	1	83	2	3.66971	4.572425	5.47514	0.00354561	7.51669e-4	0.0529186	0.0251578
chr12	120163759	120163835	5432930	0	-	0.236842	[0,0.28]	chr12	519256	1	INTRON	INTRON	GCN1	ENSG00000089154.11	ENST00000300648.7	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.29536	4.572335	4.84931	0.0590175	0.00779241	0.167915	0.0787356
chr6	160045057	160045157	3023742	0	+	0.25	[0,0.28]	chr6	282081	4	SS5_PROX	SS5_PROX:INTRON	IGF2R	ENSG00000197081.16	ENST00000676781.1:ENST00000677704.1:ENST00000356956.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	36	2	4.29536	4.572335	4.84931	0.0590175	0.00779241	0.167915	0.0787356
chr7	96697173	96697272	3578449	0	-	0.262626	[0,0.28]	chr7	333203	24	EXON_MRNA	EXON_MRNA:INTRON	SEM1	ENSG00000127922.10	ENST00000466986.5:ENST00000617133.4:ENST00000618105.4:ENST00000619259.4:ENST00000613919.4:ENST00000417009.5:ENST00000623693.3:ENST00000623498.3:ENST00000444799.5:ENST00000449279.5:ENST00000488005.5:ENST00000413065.5:ENST00000248566.4:ENST00000482389.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	36	2	4.29536	4.572335	4.84931	0.0590175	0.00779241	0.167915	0.0787356
chr17	58679608	58679690	6800663	0	-	0.390244	(0.378,0.408]	chr17	671667	2	EXON_SMALL	EXON_SMALL	RNVU1-34	ENSG00000200997.1	ENST00000364127.1	snRNA	snRNA	snRNA	snRNA	2	116	2	3.80574	4.572015	5.33829	3.59275e-4	2.16486e-5	0.0169207	0.00379246
chr15	76226579	76226672	6227474	0	-	0.516129	(0.515,0.57]	chr15	594880	8	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	ETFA	ENSG00000140374.17	ENST00000690610.1:ENST00000557943.6:ENST00000692691.1:ENST00000688389.1:ENST00000687293.1:ENST00000691695.1:ENST00000685863.1:ENST00000689730.1:ENST00000687975.1:ENST00000693064.1:ENST00000688908.1:ENST00000691021.1:ENST00000433983.6:ENST00000557975.5:ENST00000267950.12:ENST00000685548.1:ENST00000565910.6:ENST00000688154.1:ENST00000560179.2:ENST00000560595.6:ENST00000560726.5:ENST00000559602.5:ENST00000560044.6:ENST00000559973.5:ENST00000559386.2:ENST00000560899.5:ENST00000685118.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	61	2	3.76294	4.57185	5.38076	3.24968e-4	2.08636e-4	0.0165891	0.0125926
chr12	28345940	28346040	5101844	0	+	0.22	[0,0.28]	chr12	481970	378	INTRON	INTRON	CCDC91	ENSG00000123106.11	ENST00000540794.5:ENST00000536154.5:ENST00000535520.5:ENST00000539107.5:ENST00000545336.5:ENST00000536442.6:ENST00000543809.5:ENST00000545737.5:ENST00000381259.5:ENST00000540401.5:ENST00000539904.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	36	2	4.38376	4.5717	4.75964	0.0258536	0.0232081	0.133676	0.118148
chr16	48362526	48362623	6483829	0	-	0.237113	[0,0.28]	chr16	627077	2	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	SIAH1	ENSG00000196470.12	ENST00000568007.5:ENST00000394725.3:ENST00000356721.3:ENST00000380006.2:ENST00000563745.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	36	2	4.38376	4.5717	4.75964	0.0258536	0.0232081	0.133676	0.118148
chr17	20904938	20905035	6576432	0	+	0.216495	[0,0.28]	chr17	639391	29	EXON_LNCRNA	EXON_LNCRNA:INTRON	CCDC144NL-AS1	ENSG00000233098.10	ENST00000577537.5:ENST00000692759.1:ENST00000443508.8:ENST00000692309.1:ENST00000439794.6:ENST00000417232.6:ENST00000583962.2:ENST00000577860.5	lncRNA	lncRNA	lncRNA	lncRNA	0	36	2	4.38376	4.5717	4.75964	0.0258536	0.0232081	0.133676	0.118148
chr18	1400527	1400626	6942197	0	-	0.252525	[0,0.28]	chr18	686627	85	INTRON	INTRON	LINC00470	ENSG00000132204.14	ENST00000657423.1:ENST00000657618.1:ENST00000669242.1:ENST00000660475.1:ENST00000653775.1:ENST00000661931.1:ENST00000412816.7:ENST00000667416.1:ENST00000661852.1:ENST00000661646.1:ENST00000667776.1:ENST00000654559.1:ENST00000661233.1:ENST00000653213.1:ENST00000659094.1:ENST00000660964.1:ENST00000577403.6:ENST00000669153.1:ENST00000657121.1:ENST00000655957.1:ENST00000659289.1:ENST00000665133.1:ENST00000671558.1:ENST00000666542.1:ENST00000669312.1:ENST00000581430.5:ENST00000658090.1:ENST00000667225.1:ENST00000582570.1	lncRNA	lncRNA	lncRNA	lncRNA	0	36	2	4.38376	4.5717	4.75964	0.0258536	0.0232081	0.133676	0.118148
chr2	32421455	32421555	731430	0	+	0.28	[0,0.28]	chr2	84325	49	INTRON	INTRON	BIRC6	ENSG00000115760.15	ENST00000421745.7:ENST00000648282.1	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.38376	4.5717	4.75964	0.0258536	0.0232081	0.133676	0.118148
chr5	154807862	154807958	2527551	0	+	0.270833	[0,0.28]	chr5	241693	15	INTRON	INTRON	LARP1	ENSG00000155506.19	ENST00000687700.1:ENST00000336314.9:ENST00000690816.1:ENST00000518297.6:ENST00000685946.1:ENST00000685355.1:ENST00000688232.1:ENST00000519194.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	36	2	4.38376	4.5717	4.75964	0.0258536	0.0232081	0.133676	0.118148
chr6	87190839	87190939	2913611	0	+	0.24	[0,0.28]	chr6	275281	206	INTRON	INTRON	ZNF292	ENSG00000188994.13	ENST00000369577.8:ENST00000369578.6:ENST00000518845.1:ENST00000339907.8:ENST00000496806.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	36	2	4.38376	4.5717	4.75964	0.0258536	0.0232081	0.133676	0.118148
chr8	123251482	123251576	4041589	0	-	0.276596	[0,0.28]	chr8	368603	8	INTRON	INTRON	ZHX1-C8orf76:ZHX1	ENSG00000259305.6:ENSG00000165156.15	ENST00000357082.8:ENST00000622816.2:ENST00000297857.3:ENST00000395571.8:ENST00000517516.1:ENST00000522655.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	36	2	4.38376	4.5717	4.75964	0.0258536	0.0232081	0.133676	0.118148
chr3	101682286	101682368	1758897	0	-	0.609756	(0.57,1]	chr3	178424	4	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	RPL24	ENSG00000114391.13	ENST00000394077.8:ENST00000464595.1:ENST00000495401.5:ENST00000488288.1:ENST00000469605.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	26	2	4.16881	4.571695	4.97458	0.00574776	2.67728e-4	0.0681402	0.0149989
chr9	136091993	136092093	4373435	0	-	0.62	(0.57,1]	chr9	402592	411	INTRON	INTRON	NACC2	ENSG00000148411.8	ENST00000277554.4	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.16881	4.571695	4.97458	0.00574776	2.67728e-4	0.0681402	0.0149989
chr1	213060107	213060207	310788	0	+	0.29	(0.28,0.32]	chr1	35901	82	INTRON	INTRON	RPS6KC1	ENSG00000136643.12	ENST00000615329.4:ENST00000543354.5:ENST00000614059.4:ENST00000543470.5:ENST00000366960.8:ENST00000366959.4	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.2432	4.57141	4.89962	0.0479043	0.00425206	0.153019	0.0595557
chr12	76837764	76837864	5174604	0	+	0.31	(0.28,0.32]	chr12	490143	89	INTRON	INTRON	ZDHHC17	ENSG00000186908.15	ENST00000426126.7	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.2432	4.57141	4.89962	0.0479043	0.00425206	0.153019	0.0595557
chr13	113186936	113187034	5651832	0	-	0.285714	(0.28,0.32]	chr13	538587	15	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	PCID2	ENSG00000126226.22	ENST00000337344.9:ENST00000622406.4:ENST00000375479.6:ENST00000375477.5:ENST00000246505.9:ENST00000375459.5:ENST00000493650.5:ENST00000375457.2:ENST00000473462.5:ENST00000475433.5:ENST00000480971.5:ENST00000484641.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	35	2	4.2432	4.57141	4.89962	0.0479043	0.00425206	0.153019	0.0595557
chr17	62006342	62006440	6810280	0	-	0.295918	(0.28,0.32]	chr17	672912	28	EXON_MRNA	EXON_MRNA:INTRON	MED13:ENSG00000279133	ENSG00000108510.10:ENSG00000279133.1	ENST00000397786.7:ENST00000624147.1	protein_coding	protein_coding	protein_coding:TEC	protein_coding:TEC	0	35	2	4.2432	4.57141	4.89962	0.0479043	0.00425206	0.153019	0.0595557
chr20	49140915	49141015	7351898	0	-	0.32	(0.28,0.32]	chr20	749652	46	INTRON	INTRON	STAU1	ENSG00000124214.21	ENST00000371856.7:ENST00000371828.7:ENST00000340954.11:ENST00000347458.9:ENST00000360426.8:ENST00000371792.5:ENST00000371802.5:ENST00000437404.2	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.2432	4.57141	4.89962	0.0479043	0.00425206	0.153019	0.0595557
chr7	157147428	157147528	3454024	0	+	0.32	(0.28,0.32]	chr7	322895	77	INTRON	INTRON	UBE3C	ENSG00000009335.18	ENST00000611269.4:ENST00000348165.10:ENST00000389103.4:ENST00000430750.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	35	2	4.2432	4.57141	4.89962	0.0479043	0.00425206	0.153019	0.0595557
chr11	5481098	5481198	4898033	0	-	0.45	(0.44,0.476]	chr11	459195	118	INTRON	INTRON	HBG2:ENSG00000239920:HBE1:OR51B5	ENSG00000196565.15:ENSG00000239920.2:ENSG00000213931.7:ENSG00000167355.8	ENST00000380252.6:ENST00000380259.7:ENST00000292896.3:ENST00000380237.5:ENST00000420726.6:ENST00000420465.6:ENST00000415970.6:ENST00000418729.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:nonsense_mediated_decay:processed_transcript	0	32	2	4.5227	4.5711200000000005	4.61954	0.0128818	0.00506805	0.0926667	0.0646039
chr14	34256810	34256910	5864081	0	-	0.47	(0.44,0.476]	chr14	557083	291	INTRON	INTRON	EGLN3	ENSG00000129521.15	ENST00000551935.5	protein_coding	processed_transcript	protein_coding	processed_transcript	0	32	2	4.5227	4.5711200000000005	4.61954	0.0128818	0.00506805	0.0926667	0.0646039
chr14	90403541	90403631	5805063	0	+	0.466667	(0.44,0.476]	chr14	550115	3	SS3_PROX	SS3_PROX:INTRON	CALM1	ENSG00000198668.14	ENST00000557020.5:ENST00000356978.9:ENST00000447653.8:ENST00000553995.5:ENST00000553630.1:ENST00000553542.5:ENST00000659177.1:ENST00000553964.5:ENST00000544280.6:ENST00000663135.1:ENST00000555267.1:ENST00000553422.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	32	2	4.5227	4.5711200000000005	4.61954	0.0128818	0.00506805	0.0926667	0.0646039
chr2	121641272	121641372	1222308	0	-	0.47	(0.44,0.476]	chr2	130061	347	INTRON	INTRON	CLASP1	ENSG00000074054.20	ENST00000263710.8:ENST00000397587.7:ENST00000541377.5:ENST00000409078.8:ENST00000455322.6	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.5227	4.5711200000000005	4.61954	0.0128818	0.00506805	0.0926667	0.0646039
chr3	47824366	47824466	1420183	0	+	0.46	(0.44,0.476]	chr3	149207	2	SS3_PROX	SS3_PROX:INTRON	DHX30	ENSG00000132153.15	ENST00000415400.5:ENST00000492893.5:ENST00000395745.6:ENST00000445061.6:ENST00000441384.5:ENST00000348968.8:ENST00000446256.6:ENST00000619982.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	32	2	4.5227	4.5711200000000005	4.61954	0.0128818	0.00506805	0.0926667	0.0646039
chr7	64347390	64347489	3319778	0	+	0.474747	(0.44,0.476]	chr7	308636	101	INTRON	INTRON	ZNF736	ENSG00000234444.10	ENST00000355095.8:ENST00000423484.3	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.5227	4.5711200000000005	4.61954	0.0128818	0.00506805	0.0926667	0.0646039
chr8	123077171	123077232	3850272	0	+	0.459016	(0.44,0.476]	chr8	354662	2	CDS	CDS:UTR5:EXON_MRNA:INTRON	TBC1D31	ENSG00000156787.17	ENST00000520368.5:ENST00000519418.5:ENST00000287380.6:ENST00000522420.5:ENST00000327098.9:ENST00000518099.5:ENST00000521676.5:ENST00000524307.5:ENST00000522276.1:ENST00000518684.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	32	2	4.5227	4.5711200000000005	4.61954	0.0128818	0.00506805	0.0926667	0.0646039
chr9	136683207	136683306	4375289	0	-	0.454545	(0.44,0.476]	chr9	403154	53	INTRON	INTRON	AGPAT2	ENSG00000169692.13	ENST00000371696.7:ENST00000371694.7:ENST00000538402.1:ENST00000470861.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	32	2	4.5227	4.5711200000000005	4.61954	0.0128818	0.00506805	0.0926667	0.0646039
chr2	8957896	8957996	1063109	0	-	0.36	(0.35,0.378]	chr2	113375	143	INTRON	INTRON	MBOAT2	ENSG00000143797.12	ENST00000305997.8:ENST00000486484.5:ENST00000477073.5:ENST00000474341.5:ENST00000462696.1:ENST00000460786.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	33	2	4.39303	4.570815	4.7486	0.0237246	0.00418965	0.118716	0.0591344
chr3	47906067	47906166	1685656	0	-	0.363636	(0.35,0.378]	chr3	172207	27	INTRON	INTRON	MAP4	ENSG00000047849.22	ENST00000429422.5:ENST00000683076.1:ENST00000395734.7:ENST00000426837.6:ENST00000360240.10:ENST00000383736.3:ENST00000482752.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	33	2	4.39303	4.570815	4.7486	0.0237246	0.00418965	0.118716	0.0591344
chr11	78345070	78345170	4999659	0	-	0.5	(0.476,0.515]	chr11	472466	33	INTRON	INTRON	GAB2	ENSG00000033327.13	ENST00000361507.5:ENST00000526030.1:ENST00000528886.5:ENST00000530915.1:ENST00000534823.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	67	2	3.40003	4.570790000000001	5.74155	0.00139193	1.47804e-4	0.0341261	0.0111067
chr6	12032054	12032153	2814424	0	+	0.282828	(0.28,0.32]	chr6	264794	113	INTRON	INTRON	HIVEP1	ENSG00000095951.17	ENST00000491710.5:ENST00000487103.5:ENST00000379388.7:ENST00000627968.2:ENST00000541134.5:ENST00000442081.6:ENST00000478545.1:ENST00000484210.1	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.33863	4.57059	4.80255	0.0207276	0.0137406	0.122348	0.0949306
chr9	99954540	99954640	4176525	0	+	0.3	(0.28,0.32]	chr9	380785	6	INTRON	INTRON	STX17	ENSG00000136874.11	ENST00000259400.11:ENST00000529340.5:ENST00000525342.5:ENST00000524405.5:ENST00000525640.5:ENST00000534052.1:ENST00000525847.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	35	2	4.33863	4.57059	4.80255	0.0207276	0.0137406	0.122348	0.0949306
chr5	139656658	139656758	2501282	0	+	0.38	(0.378,0.408]	chr5	239074	51	INTRON	INTRON	CXXC5	ENSG00000171604.12	ENST00000502295.1:ENST00000504944.1:ENST00000302517.8:ENST00000507139.5:ENST00000504844.1:ENST00000502336.5:ENST00000520967.1:ENST00000511048.1:ENST00000512816.1	protein_coding	protein_coding	protein_coding	protein_coding	1	73	2	3.32016	4.570565	5.82097	0.00268328	3.45471e-5	0.0464781	0.00467863
chr1	52810072	52810171	104724	0	+	0.353535	(0.35,0.378]	chr1	13693	42	INTRON	INTRON	ZYG11B	ENSG00000162378.13	ENST00000294353.7:ENST00000545132.5	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.49626	4.570415000000001	4.64457	0.012652	0.00917582	0.0926667	0.0855292
chr1	205630435	205630534	623491	0	-	0.353535	(0.35,0.378]	chr1	74156	49	INTRON	INTRON	ELK4	ENSG00000158711.14	ENST00000616704.4:ENST00000357992.9:ENST00000289703.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	33	2	4.49626	4.570415000000001	4.64457	0.012652	0.00917582	0.0926667	0.0855292
chr20	33376292	33376391	7328233	0	-	0.363636	(0.35,0.378]	chr20	746252	17	INTRON	INTRON	CDK5RAP1	ENSG00000101391.21	ENST00000339269.5:ENST00000357886.8:ENST00000346416.7:ENST00000473997.5:ENST00000482967.5:ENST00000481964.5:ENST00000427097.5:ENST00000498525.5:ENST00000496381.5:ENST00000460043.5:ENST00000471264.5:ENST00000473791.1:ENST00000477105.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	33	2	4.49626	4.570415000000001	4.64457	0.012652	0.00917582	0.0926667	0.0855292
chr1	116397487	116397587	195833	0	+	0.48	(0.476,0.515]	chr1	21681	2	SS3_PROX	SS3_PROX:INTRON	ATP1A1	ENSG00000163399.16	ENST00000295598.10:ENST00000537345.5:ENST00000369496.8	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.44128	4.5702300000000005	4.69918	0.0151924	0.00400966	0.0994339	0.057767
chr1	226973962	226974061	328903	0	+	0.494949	(0.476,0.515]	chr1	37923	79	INTRON	INTRON	COQ8A	ENSG00000163050.18	ENST00000366778.5:ENST00000366777.4:ENST00000478406.5:ENST00000489044.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	32	2	4.44128	4.5702300000000005	4.69918	0.0151924	0.00400966	0.0994339	0.057767
chr8	42355021	42355119	3743765	0	+	0.5	(0.476,0.515]	chr8	348218	1	SS3_PROX	SS3_PROX:INTRON	POLB	ENSG00000070501.12	ENST00000532157.5:ENST00000520008.5:ENST00000518925.5:ENST00000265421.9:ENST00000522610.5:ENST00000519771.5:ENST00000524208.5:ENST00000521290.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	32	2	4.44128	4.5702300000000005	4.69918	0.0151924	0.00400966	0.0994339	0.057767
chr10	74009847	74009947	4454618	0	+	0.44	(0.408,0.44]	chr10	411385	111	INTRON	INTRON	VCL	ENSG00000035403.18	ENST00000623461.3:ENST00000372755.7:ENST00000624354.3:ENST00000211998.10:ENST00000478896.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	67	2	3.41323	4.57011	5.72699	0.00129989	1.93446e-4	0.0333764	0.0127226
chr12	55981918	55982018	5144943	0	+	0.48	(0.476,0.515]	chr12	485924	6	INTRON	INTRON	RAB5B	ENSG00000111540.16	ENST00000553116.5:ENST00000549505.5:ENST00000360299.10:ENST00000546810.1:ENST00000548068.5:ENST00000549915.5:ENST00000448789.2:ENST00000551459.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	32	2	4.526	4.57001	4.61402	0.00947755	0.00699701	0.0817766	0.0754576
chr16	16501818	16501918	6310880	0	+	0.49	(0.476,0.515]	chr16	604098	18	INTRON	INTRON	ENSG00000260126	ENSG00000260126.2	ENST00000567465.2	lncRNA	lncRNA	lncRNA	lncRNA	0	32	2	4.526	4.57001	4.61402	0.00947755	0.00699701	0.0817766	0.0754576
chr16	85260462	85260562	6412433	0	+	0.5	(0.476,0.515]	chr16	615455	752	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.526	4.57001	4.61402	0.00947755	0.00699701	0.0817766	0.0754576
chr20	47351976	47352075	7349470	0	-	0.494949	(0.476,0.515]	chr20	749366	2	INTRON	INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000435836.5	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.526	4.57001	4.61402	0.00947755	0.00699701	0.0817766	0.0754576
chr6	125007475	125007575	2951926	0	+	0.49	(0.476,0.515]	chr6	277690	9	INTRON	INTRON	RNF217	ENSG00000146373.17	ENST00000521654.7:ENST00000560949.5:ENST00000519565.5:ENST00000454842.2:ENST00000368414.6:ENST00000519799.5:ENST00000359704.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	32	2	4.526	4.57001	4.61402	0.00947755	0.00699701	0.0817766	0.0754576
chr9	34181030	34181129	4111288	0	+	0.484848	(0.476,0.515]	chr9	374718	14	INTRON	INTRON	UBAP1	ENSG00000165006.14	ENST00000625521.2:ENST00000379186.8:ENST00000297661.9:ENST00000626262.2	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.526	4.57001	4.61402	0.00947755	0.00699701	0.0817766	0.0754576
chrX	101359093	101359192	7855857	0	-	0.494949	(0.476,0.515]	chrX	800893	4	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	BTK	ENSG00000010671.18	ENST00000695616.1:ENST00000695617.1:ENST00000695615.1:ENST00000695614.1:ENST00000621635.4:ENST00000697417.1:ENST00000695620.1:ENST00000308731.8:ENST00000695619.1:ENST00000695618.1:ENST00000478995.2:ENST00000488970.2:ENST00000695621.1:ENST00000695622.1:ENST00000695623.1:ENST00000695624.1:ENST00000695625.1:ENST00000464006.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	32	2	4.526	4.57001	4.61402	0.00947755	0.00699701	0.0817766	0.0754576
chr10	68647005	68647105	4441755	0	+	0.34	(0.32,0.35]	chr10	409534	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	TET1	ENSG00000138336.9	ENST00000373644.5	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.273	4.56961	4.86622	0.0368357	0.00354075	0.138959	0.0546236
chr3	49981768	49981868	1423377	0	+	0.34	(0.32,0.35]	chr3	149987	1	SS5_PROX	SS5_PROX:INTRON	RBM6	ENSG00000004534.15	ENST00000442092.5:ENST00000443081.5:ENST00000419610.5:ENST00000441115.5:ENST00000422955.5:ENST00000454079.5:ENST00000266022.9:ENST00000425608.5:ENST00000434592.5:ENST00000464013.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	34	2	4.273	4.56961	4.86622	0.0368357	0.00354075	0.138959	0.0546236
chr9	33942362	33942454	4244760	0	-	0.347826	(0.32,0.35]	chr9	390392	1	INTRON	INTRON	UBAP2	ENSG00000137073.24	ENST00000379238.7:ENST00000683659.1:ENST00000682239.1:ENST00000683140.1:ENST00000682209.1:ENST00000681980.1:ENST00000360802.6:ENST00000683252.1:ENST00000684158.1:ENST00000682914.1:ENST00000683717.1:ENST00000379239.9:ENST00000683084.1:ENST00000684754.1:ENST00000629575.2:ENST00000379225.2:ENST00000684298.1:ENST00000412543.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	34	2	4.273	4.56961	4.86622	0.0368357	0.00354075	0.138959	0.0546236
chr2	15505712	15505812	1072605	0	-	0.35	(0.32,0.35]	chr2	114435	11	INTRON	INTRON	NBAS	ENSG00000151779.13	ENST00000281513.10:ENST00000427792.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	82	2	2.89743	4.569255	6.24108	0.0127608	7.58731e-6	0.0926667	0.00196822
chr3	197777401	197777501	1597612	0	+	0.5	(0.476,0.515]	chr3	165543	4	SS5_PROX	SS5_PROX:INTRON	FYTTD1	ENSG00000122068.13	ENST00000415708.6:ENST00000241502.9:ENST00000424384.2	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.01777	4.5692450000000004	5.12072	0.0411361	8.42139e-4	0.1451	0.0263691
chr5	66070008	66070105	2372309	0	+	0.340206	(0.32,0.35]	chr5	228611	6	INTRON	INTRON	ERBIN	ENSG00000112851.15	ENST00000380943.6:ENST00000416865.6:ENST00000380935.5:ENST00000284037.10:ENST00000380938.6:ENST00000511297.5:ENST00000506030.5:ENST00000508515.1:ENST00000511671.5:ENST00000503913.5:ENST00000512354.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	74	2	3.23331	4.56923	5.90515	0.00315414	2.30541e-4	0.0515261	0.013917
chr10	30312143	30312241	4587266	0	-	0.346939	(0.32,0.35]	chr10	422944	25	UTR3	UTR3:EXON_MRNA	MTPAP	ENSG00000107951.15	ENST00000263063.9	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.37269	4.56885	4.76501	0.0154102	0.0114287	0.108569	0.0886611
chr15	64581836	64581936	6045302	0	+	0.33	(0.32,0.35]	chr15	575696	789	INTRON	INTRON	ZNF609	ENSG00000180357.10	ENST00000326648.5:ENST00000558680.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	34	2	4.37269	4.56885	4.76501	0.0154102	0.0114287	0.108569	0.0886611
chr16	22032476	22032576	6320111	0	+	0.35	(0.32,0.35]	chr16	605040	237	INTRON	INTRON	MOSMO	ENSG00000185716.12	ENST00000567004.1:ENST00000542527.7:ENST00000331057.8:ENST00000569656.5:ENST00000562695.1:ENST00000562186.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	34	2	4.37269	4.56885	4.76501	0.0154102	0.0114287	0.108569	0.0886611
chr19	17060969	17061064	7150928	0	-	0.336842	(0.32,0.35]	chr19	722523	5	INTRON	INTRON	HAUS8	ENSG00000131351.15	ENST00000253669.10:ENST00000448593.6:ENST00000593360.1:ENST00000598517.5:ENST00000601564.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	34	2	4.37269	4.56885	4.76501	0.0154102	0.0114287	0.108569	0.0886611
chr21	6337299	6337399	7364948	0	+	0.35	(0.32,0.35]	chr21	751669	73	INTRON	INTRON	ENSG00000278903	ENSG00000278903.4	ENST00000688458.1:ENST00000689306.1:ENST00000624576.3:ENST00000623738.3:ENST00000692237.1:ENST00000624165.1	lncRNA	lncRNA	lncRNA	lncRNA	0	34	2	4.37269	4.56885	4.76501	0.0154102	0.0114287	0.108569	0.0886611
chr7	123710922	123711022	3632280	0	-	0.34	(0.32,0.35]	chr7	337581	13	INTRON	INTRON	WASL	ENSG00000106299.8	ENST00000223023.5	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.37269	4.56885	4.76501	0.0154102	0.0114287	0.108569	0.0886611
chr2	167825227	167825327	1258052	0	-	0.43	(0.408,0.44]	chr2	133322	96	INTRON	INTRON	B3GALT1-AS1	ENSG00000235335.3	ENST00000430546.2:ENST00000657553.1:ENST00000670221.1:ENST00000436982.2	lncRNA	lncRNA	lncRNA	lncRNA	3	106	2	2.91156	4.56871	6.22586	3.17111e-4	1.7283e-5	0.0159645	0.00333191
chr1	15690004	15690104	34069	0	+	0.46	(0.44,0.476]	chr1	4144	50	INTRON	INTRON	PLEKHM2	ENSG00000116786.13	ENST00000375799.8:ENST00000375793.2:ENST00000462455.1:ENST00000642363.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	32	2	4.43377	4.5686599999999995	4.70355	0.0162803	0.00383786	0.101453	0.0562562
chr1	183491054	183491154	273693	0	+	0.45	(0.44,0.476]	chr1	32019	168	INTRON	INTRON	SMG7	ENSG00000116698.22	ENST00000440812.7:ENST00000367537.7:ENST00000688051.1:ENST00000685780.1:ENST00000508461.5:ENST00000347615.6:ENST00000419169.5:ENST00000444547.6:ENST00000507469.5:ENST00000515829.6:ENST00000367538.1:ENST00000502375.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	32	2	4.43377	4.5686599999999995	4.70355	0.0162803	0.00383786	0.101453	0.0562562
chr5	176968154	176968254	2776542	0	-	0.47	(0.44,0.476]	chr5	261551	2	SS5_PROX	SS5_PROX:INTRON	UIMC1	ENSG00000087206.17	ENST00000377227.8:ENST00000511320.6:ENST00000506128.5:ENST00000512031.5:ENST00000510698.2:ENST00000503273.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	90	2	2.9044	4.5685649999999995	6.23273	0.00132926	1.47185e-5	0.0335085	0.00307878
chr8	63188634	63188734	3773192	0	+	0.11	[0,0.28]	chr8	349946	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	YTHDF3	ENSG00000185728.17	ENST00000617200.1:ENST00000623280.3:ENST00000539294.6:ENST00000621957.4:ENST00000517371.5:ENST00000615676.1:ENST00000621413.4:ENST00000621890.4:ENST00000621820.4:ENST00000518373.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	133	2	2.71942	4.56846	6.4175	0.00139528	1.23186e-4	0.0341592	0.00998846
chr11	66658264	66658364	4811233	0	+	0.46	(0.44,0.476]	chr11	447918	60	INTRON	INTRON	RBM4	ENSG00000173933.21	ENST00000396053.9	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.53034	4.568405	4.60647	0.0102339	0.00672609	0.0850389	0.0738715
chr15	90776651	90776750	6101521	0	+	0.454545	(0.44,0.476]	chr15	580921	67	INTRON	INTRON	BLM	ENSG00000197299.13	ENST00000355112.8:ENST00000648453.1:ENST00000681142.1:ENST00000560509.5:ENST00000559724.5:ENST00000680772.1:ENST00000560136.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	32	2	4.53034	4.568405	4.60647	0.0102339	0.00672609	0.0850389	0.0738715
chr17	37353332	37353431	6762515	0	-	0.474747	(0.44,0.476]	chr17	664970	76	INTRON	INTRON	ACACA	ENSG00000278540.5	ENST00000616317.5:ENST00000614428.4:ENST00000613146.4:ENST00000615229.4:ENST00000621960.1:ENST00000617548.1:ENST00000616352.4:ENST00000614789.4:ENST00000612007.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:non_stop_decay:nonsense_mediated_decay	0	32	2	4.53034	4.568405	4.60647	0.0102339	0.00672609	0.0850389	0.0738715
chrX	49241515	49241615	7659554	0	+	0.46	(0.44,0.476]	chrX	784105	1	SS3_PROX	SS3_PROX:INTRON	CCDC22	ENSG00000101997.13	ENST00000376227.4:ENST00000496651.5:ENST00000490300.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	32	2	4.53034	4.568405	4.60647	0.0102339	0.00672609	0.0850389	0.0738715
chr1	54381386	54381485	463511	0	-	0.272727	[0,0.28]	chr1	55784	247	INTRON	INTRON	SSBP3	ENSG00000157216.16	ENST00000610401.5:ENST00000357475.9:ENST00000371319.8:ENST00000417664.7:ENST00000533946.6:ENST00000371320.8:ENST00000525990.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	90	2	3.18358	4.568335	5.95309	0.00694532	1.4134e-4	0.0718189	0.0102551
chr1	166865305	166865404	576675	0	-	0.434343	(0.408,0.44]	chr1	69920	10	INTRON	INTRON	TADA1	ENSG00000152382.6	ENST00000367874.5	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.51604	4.568065000000001	4.62009	0.0137419	0.00504155	0.0949306	0.0646039
chr16	84732770	84732852	6410232	0	+	0.439024	(0.408,0.44]	chr16	615277	2	SS3_PROX	SS3_PROX:SS5_PROX:INTRON	USP10	ENSG00000103194.16	ENST00000562743.5:ENST00000540269.6:ENST00000563892.5:ENST00000562092.1:ENST00000569511.5:ENST00000219473.12:ENST00000570191.5:ENST00000563048.5:ENST00000562283.5:ENST00000563386.5:ENST00000569038.5:ENST00000570053.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	32	2	4.51604	4.568065000000001	4.62009	0.0137419	0.00504155	0.0949306	0.0646039
chr8	55891789	55891889	3754454	0	+	0.42	(0.408,0.44]	chr8	349249	113	INTRON	INTRON	LYN	ENSG00000254087.8	ENST00000519728.6:ENST00000520220.6	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.51604	4.568065000000001	4.62009	0.0137419	0.00504155	0.0949306	0.0646039
chr9	125298489	125298589	4198625	0	+	0.43	(0.408,0.44]	chr9	383161	2	SS3_PROX	SS3_PROX:INTRON	GAPVD1	ENSG00000165219.23	ENST00000497580.5:ENST00000461379.5:ENST00000297933.11:ENST00000394084.5:ENST00000470056.5:ENST00000394105.6:ENST00000394083.6:ENST00000495955.5:ENST00000467750.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	32	2	4.51604	4.568065000000001	4.62009	0.0137419	0.00504155	0.0949306	0.0646039
chr8	42154873	42154960	3742751	0	+	0.494253	(0.476,0.515]	chr8	348001	2	CDS	CDS:EXON_MRNA:INTRON	AP3M2	ENSG00000070718.12	ENST00000174653.3:ENST00000518421.5:ENST00000517865.5:ENST00000520685.1:ENST00000396926.8:ENST00000521280.5:ENST00000530375.5:ENST00000522288.5:ENST00000517922.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	34	2	4.10113	4.567895	5.03466	0.0226984	0.00252065	0.124921	0.0446195
chr7	152215438	152215538	3679052	0	-	0.45	(0.44,0.476]	chr7	341526	66	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000683200.1:ENST00000682283.1:ENST00000473186.5:ENST00000679882.1:ENST00000680969.1:ENST00000681033.1:ENST00000682176.1:ENST00000679645.1:ENST00000684550.1:ENST00000489110.2:ENST00000681838.1:ENST00000683490.1:ENST00000684623.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	34	2	4.01038	4.567755	5.12513	0.0433743	7.96486e-4	0.148082	0.0258804
chr5	38957056	38957151	2604444	0	-	0.326316	(0.32,0.35]	chr5	247775	10	INTRON	INTRON	RICTOR	ENSG00000164327.13	ENST00000357387.8:ENST00000511516.5:ENST00000296782.9:ENST00000503698.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	73	2	3.75694	4.567635	5.37833	0.00174321	3.37248e-4	0.0375363	0.0163178
chr7	101923489	101923588	3367427	0	+	0.555556	(0.515,0.57]	chr7	315225	69	INTRON	INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000497815.5:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000558469.5:ENST00000560541.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	61	2	3.8052	4.567385	5.32957	4.06834e-4	1.67082e-4	0.0185763	0.0111796
chr16	58621882	58621982	6496303	0	-	0.36	(0.35,0.378]	chr16	628638	220	INTRON	INTRON	CNOT1	ENSG00000125107.19	ENST00000317147.10:ENST00000569240.5:ENST00000567188.5:ENST00000441024.6:ENST00000565605.5:ENST00000564557.1:ENST00000569916.1:ENST00000565697.1:ENST00000569020.5:ENST00000568158.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	183	2	2.15614	4.567275	6.97841	0.00208752	3.7665e-8	0.0411885	7.77135e-5
chr2	17728529	17728626	1073844	0	-	0.298969	(0.28,0.32]	chr2	114618	17	INTRON	INTRON	SMC6	ENSG00000163029.16	ENST00000351948.8:ENST00000448223.7:ENST00000402989.5:ENST00000446852.5:ENST00000381272.5	protein_coding	protein_coding	protein_coding	protein_coding	1	76	2	3.39204	4.56719	5.7423400000000004	0.00188405	7.31742e-4	0.0402736	0.0248722
chr8	17996407	17996507	3708505	0	+	0.31	(0.28,0.32]	chr8	343990	24	INTRON	INTRON	PCM1	ENSG00000078674.19	ENST00000325083.13:ENST00000519253.5:ENST00000524226.5:ENST00000522275.5	protein_coding	protein_coding	protein_coding	protein_coding	1	76	2	3.39204	4.56719	5.7423400000000004	0.00188405	7.31742e-4	0.0402736	0.0248722
chr12	51014764	51014864	5324678	0	-	0.47	(0.44,0.476]	chr12	507738	36	INTRON	INTRON	SLC11A2	ENSG00000110911.17	ENST00000547688.7:ENST00000644495.1:ENST00000643884.1:ENST00000546636.5:ENST00000547198.5:ENST00000394904.9:ENST00000262052.9:ENST00000643123.1:ENST00000646740.1:ENST00000642227.1:ENST00000541174.6:ENST00000546743.5:ENST00000547510.5:ENST00000546488.5:ENST00000547579.5:ENST00000550714.5:ENST00000547732.5:ENST00000548193.5:ENST00000646988.1:ENST00000549625.1:ENST00000681324.1:ENST00000550995.5:ENST00000550329.1:ENST00000548150.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	67	2	3.8307	4.566800000000001	5.3029	0.00102616	1.81621e-4	0.029231300000000002	0.0117212
chr21	8447850	8447950	7367036	0	+	0.27	[0,0.28]	chr21	751838	374	INTRON	INTRON	ENSG00000280441	ENSG00000280441.3	ENST00000651813.1:ENST00000652379.1	lncRNA	lncRNA	lncRNA	lncRNA	0	37	2	4.1879	4.566755000000001	4.94561	0.0396579	0.0150263	0.161534	0.0994339
chr6	89706692	89706776	3160843	0	-	0.22619	[0,0.28]	chr6	294610	1	INTRON	INTRON	MDN1	ENSG00000112159.12	ENST00000369393.8:ENST00000629399.2	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	4.1879	4.566755000000001	4.94561	0.0396579	0.0150263	0.161534	0.0994339
chr7	152204801	152204897	3678943	0	-	0.21875	[0,0.28]	chr7	341517	13	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000683200.1:ENST00000682283.1:ENST00000473186.5:ENST00000679882.1:ENST00000680969.1:ENST00000681033.1:ENST00000682176.1:ENST00000679645.1:ENST00000683254.1:ENST00000684550.1:ENST00000489110.2:ENST00000681838.1:ENST00000683490.1:ENST00000684623.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	37	2	4.1879	4.566755000000001	4.94561	0.0396579	0.0150263	0.161534	0.0994339
chr3	196078695	196078792	1897526	0	-	0.247423	[0,0.28]	chr3	189991	12	INTRON	INTRON	TFRC	ENSG00000072274.13	ENST00000420415.5:ENST00000360110.9:ENST00000392396.7:ENST00000421258.1:ENST00000464011.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	92	2	2.89982	4.566269999999999	6.23272	0.0158893	3.87936e-5	0.101453	0.00503037
chr10	42635723	42635822	4604481	0	-	0.474747	(0.44,0.476]	chr10	424153	29	INTRON	INTRON	ZNF33B	ENSG00000196693.15	ENST00000486187.5:ENST00000359467.8:ENST00000476796.2:ENST00000493285.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	34	2	4.1054	4.566215	5.02703	0.0220205	0.00278015	0.123836	0.0469265
chr19	19031701	19031795	7153798	0	-	0.404255	(0.378,0.408]	chr19	723078	2	INTRON	INTRON	SUGP2	ENSG00000064607.17	ENST00000594773.5:ENST00000337018.10:ENST00000452918.7:ENST00000330854.15:ENST00000601879.5:ENST00000600239.5:ENST00000600377.1:ENST00000598202.1:ENST00000594445.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	33	2	4.32174	4.56571	4.80968	0.0132362	0.00679828	0.0999551	0.0711802
chr2	239975034	239975131	1345209	0	-	0.391753	(0.378,0.408]	chr2	141037	10	INTRON	INTRON	NDUFA10	ENSG00000130414.13	ENST00000419408.5:ENST00000679183.1:ENST00000677057.1:ENST00000676782.1:ENST00000677407.1:ENST00000676929.1:ENST00000678455.1:ENST00000252711.7:ENST00000677692.1:ENST00000476216.6:ENST00000677395.1:ENST00000678188.1:ENST00000677979.1:ENST00000678914.1:ENST00000678562.1:ENST00000678832.1:ENST00000677155.1:ENST00000677764.1:ENST00000677294.1:ENST00000678468.1:ENST00000677324.1:ENST00000678158.1:ENST00000676491.1:ENST00000471378.1:ENST00000677114.1:ENST00000404554.5:ENST00000620965.5:ENST00000485344.6:ENST00000679308.1:ENST00000677567.1:ENST00000679158.1:ENST00000443626.5:ENST00000444548.6:ENST00000448880.6:ENST00000677490.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	33	2	4.32174	4.56571	4.80968	0.0132362	0.00679828	0.0999551	0.0711802
chr1	153868130	153868230	557217	0	-	0.42	(0.408,0.44]	chr1	65983	394	INTRON	INTRON	GATAD2B	ENSG00000143614.10	ENST00000368655.5:ENST00000634544.1:ENST00000634408.1:ENST00000634401.1:ENST00000634791.1:ENST00000636014.1:ENST00000637331.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	32	2	4.42713	4.565615	4.7041	0.0173083	0.00381677	0.104099	0.0562562
chr13	114249265	114249363	5550572	0	+	0.418367	(0.408,0.44]	chr13	530490	19	INTRON	INTRON	CDC16	ENSG00000130177.16	ENST00000360383.7:ENST00000628084.2:ENST00000356221.8:ENST00000650489.1:ENST00000375310.5:ENST00000252457.9:ENST00000375308.5:ENST00000252458.6:ENST00000484907.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	32	2	4.42713	4.565615	4.7041	0.0173083	0.00381677	0.104099	0.0562562
chr16	29487804	29487899	6470427	0	-	0.421053	(0.408,0.44]	chr16	625097	4	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ENSG00000288632:NPIPB12	ENSG00000288632.1:ENSG00000169203.17	ENST00000675579.1:ENST00000550665.5:ENST00000549733.5:ENST00000551448.5:ENST00000552123.1:ENST00000617311.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:nonsense_mediated_decay:lncRNA	0	32	2	4.42713	4.565615	4.7041	0.0173083	0.00381677	0.104099	0.0562562
chr3	11337067	11337166	1365050	0	+	0.434343	(0.408,0.44]	chr3	143884	36	INTRON	INTRON	ATG7	ENSG00000197548.13	ENST00000693202.1:ENST00000435760.6:ENST00000685771.1:ENST00000354449.7:ENST00000354956.9:ENST00000446450.6:ENST00000424071.5:ENST00000434066.6:ENST00000478638.5:ENST00000461278.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	32	2	4.42713	4.565615	4.7041	0.0173083	0.00381677	0.104099	0.0562562
chr5	142141420	142141518	2505856	0	+	0.428571	(0.408,0.44]	chr5	239851	4	INTRON	INTRON	NDFIP1	ENSG00000131507.11	ENST00000253814.6	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.42713	4.565615	4.7041	0.0173083	0.00381677	0.104099	0.0562562
chr6	34826339	34826439	2848742	0	+	0.42	(0.408,0.44]	chr6	269139	26	INTRON	INTRON	UHRF1BP1	ENSG00000065060.18	ENST00000192788.6	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.42713	4.565615	4.7041	0.0173083	0.00381677	0.104099	0.0562562
chr10	35051256	35051355	4600757	0	-	0.616162	(0.57,1]	chr10	423836	11	INTRON	INTRON	CUL2	ENSG00000108094.17	ENST00000626172.3:ENST00000374751.7:ENST00000374748.5:ENST00000374749.8:ENST00000690123.1:ENST00000537177.6:ENST00000374746.6:ENST00000691974.1:ENST00000688571.1:ENST00000690393.1:ENST00000690092.1:ENST00000374754.9:ENST00000691272.1:ENST00000688390.1:ENST00000687282.1:ENST00000691201.1:ENST00000687194.1:ENST00000691962.1:ENST00000691858.1:ENST00000691263.1:ENST00000687524.1:ENST00000673636.2:ENST00000692866.1:ENST00000693739.1:ENST00000686302.1:ENST00000685681.1:ENST00000421317.5:ENST00000684965.1:ENST00000691457.1:ENST00000688541.1:ENST00000685488.1:ENST00000686748.1:ENST00000690789.1:ENST00000686903.1:ENST00000691635.1:ENST00000684955.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	45	2	3.5592	4.565395	5.57159	4.21089e-4	9.47307e-6	0.0183576	0.00236268
chr1	6195752	6195852	366161	0	-	0.44	(0.408,0.44]	chr1	43024	23	INTRON	INTRON	RPL22	ENSG00000116251.11	ENST00000234875.9:ENST00000480661.1:ENST00000497965.5:ENST00000471204.5:ENST00000465387.5:ENST00000462296.5:ENST00000465335.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	32	2	4.53088	4.565334999999999	4.59979	0.0109537	0.00669275	0.0873034	0.0738715
chr1	19425446	19425546	388307	0	-	0.42	(0.408,0.44]	chr1	46387	53	INTRON	INTRON	CAPZB	ENSG00000077549.19	ENST00000264202.8:ENST00000264203.7:ENST00000375142.5:ENST00000482808.2:ENST00000674449.1:ENST00000674390.1:ENST00000375144.6:ENST00000674432.1:ENST00000433834.5:ENST00000459967.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	32	2	4.53088	4.565334999999999	4.59979	0.0109537	0.00669275	0.0873034	0.0738715
chr12	118390246	118390346	5234539	0	+	0.41	(0.408,0.44]	chr12	496624	3	SS5_PROX	SS5_PROX:INTRON	SUDS3	ENSG00000111707.12	ENST00000543473.2	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.53088	4.565334999999999	4.59979	0.0109537	0.00669275	0.0873034	0.0738715
chr12	123309009	123309109	5444620	0	-	0.41	(0.408,0.44]	chr12	520976	3	SS5_PROX	SS5_PROX:INTRON	SBNO1	ENSG00000139697.14	ENST00000602398.3:ENST00000267176.8:ENST00000420886.6	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.53088	4.565334999999999	4.59979	0.0109537	0.00669275	0.0873034	0.0738715
chr19	4100357	4100451	7119298	0	-	0.425532	(0.408,0.44]	chr19	716149	11	EXON_MRNA	EXON_MRNA:INTRON	MAP2K2	ENSG00000126934.15	ENST00000262948.10:ENST00000689792.1:ENST00000601786.5:ENST00000600584.5:ENST00000394867.9:ENST00000597263.5:ENST00000688002.1:ENST00000599021.1:ENST00000687128.1:ENST00000593364.5:ENST00000602167.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	32	2	4.53088	4.565334999999999	4.59979	0.0109537	0.00669275	0.0873034	0.0738715
chr22	19836651	19836751	7555446	0	-	0.42	(0.408,0.44]	chr22	772443	149	INTRON	INTRON	GNB1L	ENSG00000185838.14	ENST00000329517.11:ENST00000403325.5:ENST00000405009.5:ENST00000460402.5:ENST00000481086.1:ENST00000453108.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	32	2	4.53088	4.565334999999999	4.59979	0.0109537	0.00669275	0.0873034	0.0738715
chr3	31593912	31594011	1392010	0	+	0.414141	(0.408,0.44]	chr3	145698	135	INTRON	INTRON	STT3B	ENSG00000163527.10	ENST00000453168.5:ENST00000295770.4:ENST00000423527.5:ENST00000462235.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	32	2	4.53088	4.565334999999999	4.59979	0.0109537	0.00669275	0.0873034	0.0738715
chr6	89864771	89864871	2916801	0	+	0.41	(0.408,0.44]	chr6	275636	4	SS5_PROX	SS5_PROX:INTRON	CASP8AP2	ENSG00000118412.13	ENST00000237177.10:ENST00000551025.4:ENST00000548224.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	32	2	4.53088	4.565334999999999	4.59979	0.0109537	0.00669275	0.0873034	0.0738715
chr9	129889552	129889650	4360389	0	-	0.428571	(0.408,0.44]	chr9	400954	25	UTR3	UTR3:EXON_MRNA	FNBP1	ENSG00000187239.17	ENST00000443566.6:ENST00000420781.5:ENST00000446176.7	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.53088	4.565334999999999	4.59979	0.0109537	0.00669275	0.0873034	0.0738715
chr20	50900826	50900924	7355568	0	-	0.357143	(0.35,0.378]	chr20	750082	60	INTRON	INTRON	ADNP	ENSG00000101126.18	ENST00000371602.9:ENST00000621696.5:ENST00000673732.1:ENST00000396029.8:ENST00000644386.1:ENST00000396032.8:ENST00000349014.8:ENST00000645081.1:ENST00000642364.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	70	2	3.77198	4.56513	5.35828	0.00135282	2.78147e-4	0.0336321	0.0148626
chr5	176937437	176937537	2776232	0	-	0.42	(0.408,0.44]	chr5	261526	178	INTRON	INTRON	UIMC1	ENSG00000087206.17	ENST00000377227.8:ENST00000511320.6:ENST00000506128.5:ENST00000512031.5:ENST00000510698.2:ENST00000503273.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	34	2	4.00385	4.5647649999999995	5.12568	0.0454568	7.90919e-4	0.149888	0.0258324
chr7	157364837	157364934	3455582	0	+	0.43299	(0.408,0.44]	chr7	323065	12	INTRON	INTRON	DNAJB6	ENSG00000105993.15	ENST00000441561.5:ENST00000429029.6:ENST00000262177.9:ENST00000486083.6:ENST00000417758.5:ENST00000459889.5:ENST00000443280.5:ENST00000488001.5:ENST00000441291.5:ENST00000437030.5:ENST00000412557.5:ENST00000453383.5:ENST00000634080.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	34	2	4.00385	4.5647649999999995	5.12568	0.0454568	7.90919e-4	0.149888	0.0258324
chr1	171497897	171497996	253338	0	+	0.484848	(0.476,0.515]	chr1	30096	118	INTRON	INTRON	PRRC2C	ENSG00000117523.18	ENST00000647382.2:ENST00000367742.7:ENST00000476522.5:ENST00000338920.8:ENST00000467601.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	33	2	4.13586	4.564640000000001	4.99342	0.031846	0.00139274	0.13151	0.0341261
chr10	3161672	3161766	4542978	0	-	0.5	(0.476,0.515]	chr10	419455	10	INTRON	INTRON	PITRM1	ENSG00000107959.17	ENST00000224949.9:ENST00000380989.6:ENST00000451104.6:ENST00000677384.1:ENST00000679309.1:ENST00000678403.1:ENST00000380994.6:ENST00000678855.1:ENST00000678436.1:ENST00000677817.1:ENST00000677305.1:ENST00000678986.1:ENST00000677001.1:ENST00000678987.1:ENST00000678601.1:ENST00000676953.1:ENST00000676519.1:ENST00000678050.1:ENST00000678370.1:ENST00000677922.1:ENST00000678441.1:ENST00000679134.1:ENST00000677598.1:ENST00000678539.1:ENST00000679210.1:ENST00000430362.2:ENST00000678663.1:ENST00000678972.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	33	2	4.13586	4.564640000000001	4.99342	0.031846	0.00139274	0.13151	0.0341261
chr11	67220101	67220200	4813469	0	+	0.515152	(0.476,0.515]	chr11	448162	3	INTRON	INTRON	KDM2A	ENSG00000173120.15	ENST00000529006.7:ENST00000398645.6:ENST00000308783.9:ENST00000526258.5:ENST00000531696.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	33	2	4.13586	4.564640000000001	4.99342	0.031846	0.00139274	0.13151	0.0341261
chr3	138805151	138805250	1831204	0	-	0.484848	(0.476,0.515]	chr3	184062	82	INTRON	INTRON	PIK3CB	ENSG00000051382.9	ENST00000674063.1:ENST00000477593.5:ENST00000462898.5:ENST00000483968.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	33	2	4.13586	4.564640000000001	4.99342	0.031846	0.00139274	0.13151	0.0341261
chr19	34407075	34407174	7052914	0	+	0.545455	(0.515,0.57]	chr19	703447	17	INTRON	INTRON	PDCD2L	ENSG00000126249.8	ENST00000246535.4:ENST00000587385.6:ENST00000587065.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	31	2	4.20381	4.5642700000000005	4.92473	0.0189208	0.00108255	0.108861	0.0300133
chr14	23032373	23032472	5842427	0	-	0.40404	(0.378,0.408]	chr14	555480	42	INTRON	INTRON	PSMB5	ENSG00000100804.19	ENST00000555895.5:ENST00000361611.11:ENST00000460922.2:ENST00000493471.2:ENST00000425762.2:ENST00000334454.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	68	2	3.79857	4.564125	5.32968	0.00119786	2.23525e-4	0.0315806	0.0131533
chr19	16097231	16097328	7026192	0	+	0.505155	(0.476,0.515]	chr19	699224	6	INTRON	INTRON	TPM4	ENSG00000167460.17	ENST00000646974.2:ENST00000586499.6:ENST00000647464.2:ENST00000668959.1:ENST00000590180.3:ENST00000655004.1:ENST00000642789.1:ENST00000653979.1:ENST00000645471.1:ENST00000659595.1:ENST00000647037.1:ENST00000643579.2:ENST00000586193.6:ENST00000643494.1:ENST00000670382.1:ENST00000300933.9:ENST00000646575.1:ENST00000586833.7:ENST00000642221.1:ENST00000658224.1:ENST00000344824.11:ENST00000588483.2:ENST00000664983.1:ENST00000663894.1:ENST00000588032.6:ENST00000653961.1:ENST00000591645.3:ENST00000658489.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	94	2	3.05958	4.56409	6.0686	8.34691e-4	7.85791e-6	0.0266389	0.00201289
chr1	167542801	167542900	576930	0	-	0.454545	(0.44,0.476]	chr1	69951	1	INTRON	INTRON	CREG1	ENSG00000143162.9	ENST00000466652.2:ENST00000370509.5	protein_coding	protein_coding	protein_coding	protein_coding	1	66	2	3.63638	4.563675	5.49097	4.8612e-4	4.74104e-4	0.0203841	0.0196816
chr14	73964028	73964128	5921098	0	-	0.5	(0.476,0.515]	chr14	562388	9	UTR3	UTR3:EXON_MRNA:INTRON	ENTPD5	ENSG00000187097.13	ENST00000557325.5:ENST00000555829.5:ENST00000334696.11	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.21964	4.563625	4.90761	0.0167715	0.00386428	0.110511	0.0542786
chr14	105330935	105331034	5829705	0	+	0.50505	(0.476,0.515]	chr14	553414	123	INTRON	INTRON	PACS2	ENSG00000179364.15	ENST00000430725.6:ENST00000325438.12:ENST00000447393.6:ENST00000685365.1:ENST00000686173.1:ENST00000547217.5:ENST00000686461.1:ENST00000548265.1:ENST00000689240.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	33	2	4.21964	4.563625	4.90761	0.0167715	0.00386428	0.110511	0.0542786
chr4	145038449	145038549	2254157	0	-	0.49	(0.476,0.515]	chr4	220098	47	INTRON	INTRON	ANAPC10	ENSG00000164162.14	ENST00000641499.1:ENST00000506851.5:ENST00000613466.4:ENST00000507656.6:ENST00000502651.5:ENST00000309439.9:ENST00000451299.6:ENST00000510270.5:ENST00000511466.5:ENST00000514390.5:ENST00000513054.5:ENST00000502562.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	33	2	4.21964	4.563625	4.90761	0.0167715	0.00386428	0.110511	0.0542786
chr8	141293404	141293504	4080974	0	-	0.47	(0.44,0.476]	chr8	370669	384	INTRON	INTRON	SLC45A4	ENSG00000022567.10	ENST00000517878.6:ENST00000520137.1:ENST00000521804.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	66	2	3.55068	4.563615	5.57655	7.06861e-4	3.3967e-4	0.0241881	0.0170719
chr2	229829688	229829788	1340729	0	-	0.57	(0.515,0.57]	chr2	140414	4	SS3_PROX	SS3_PROX:INTRON	TRIP12	ENSG00000153827.14	ENST00000675453.1:ENST00000675903.1:ENST00000283943.9:ENST00000675423.1:ENST00000389044.8:ENST00000389045.7:ENST00000479037.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	31	2	4.28921	4.5634250000000005	4.83764	0.00990051	0.00279527	0.0877296	0.0469265
chr8	42279672	42279772	3743023	0	+	0.56	(0.515,0.57]	chr8	348064	71	INTRON	INTRON	IKBKB	ENSG00000104365.16	ENST00000520810.6:ENST00000629753.2:ENST00000517890.5:ENST00000520835.7:ENST00000523105.5:ENST00000519735.5:ENST00000519733.5:ENST00000518679.5:ENST00000517917.5:ENST00000342222.6:ENST00000520201.5:ENST00000518647.5:ENST00000517388.5:ENST00000521661.5:ENST00000520655.5:ENST00000517812.5:ENST00000522147.4:ENST00000523517.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	31	2	4.28921	4.5634250000000005	4.83764	0.00990051	0.00279527	0.0877296	0.0469265
chr9	131408932	131409032	4217118	0	+	0.53	(0.515,0.57]	chr9	386720	143	INTRON	INTRON	PRRC2B	ENSG00000288701.1	ENST00000682525.1:ENST00000684596.1:ENST00000683519.1:ENST00000682501.1	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.28921	4.5634250000000005	4.83764	0.00990051	0.00279527	0.0877296	0.0469265
chrX	24888875	24888959	7633683	0	+	0.547619	(0.515,0.57]	chrX	781795	4	INTRON	INTRON	POLA1	ENSG00000101868.13	ENST00000672178.1:ENST00000379068.8:ENST00000379059.7:ENST00000611764.2:ENST00000679301.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	31	2	4.28921	4.5634250000000005	4.83764	0.00990051	0.00279527	0.0877296	0.0469265
chr18	80141244	80141344	6938414	0	+	0.33	(0.32,0.35]	chr18	686214	10	INTRON	INTRON	ADNP2	ENSG00000101544.9	ENST00000561195.1	protein_coding	protein_coding	protein_coding	protein_coding	1	72	2	3.57731	4.563375	5.54944	9.42646e-4	7.67492e-4	0.0280811	0.0254532
chr17	64480659	64480745	6815602	0	-	0.360465	(0.35,0.378]	chr17	673725	3	SS3_PROX	SS3_PROX:INTRON	POLG2	ENSG00000256525.8	ENST00000539111.7:ENST00000581355.1:ENST00000671755.1:ENST00000673460.1:ENST00000585104.2:ENST00000582501.5:ENST00000577506.5:ENST00000580490.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	75	2	3.25549	4.563135	5.87078	0.00363602	3.6006e-5	0.0535085	0.00481059
chr4	94256356	94256456	1998007	0	+	0.46	(0.44,0.476]	chr4	199451	23	INTRON	INTRON	SMARCAD1	ENSG00000163104.18	ENST00000359052.8:ENST00000457823.6:ENST00000354268.9:ENST00000510105.5:ENST00000394961.6:ENST00000509418.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	33	2	4.12843	4.563124999999999	4.99782	0.0337192	0.0013223	0.134145	0.0333932
chr19	48327121	48327221	7087409	0	+	0.53	(0.515,0.57]	chr19	709200	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	EMP3	ENSG00000142227.11	ENST00000599704.5:ENST00000596315.5:ENST00000594198.1:ENST00000597529.1:ENST00000270221.11:ENST00000599255.5:ENST00000597279.5:ENST00000593437.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	62	2	3.31388	4.563035	5.81219	0.00174704	4.05175e-5	0.0386026	0.00539487
chr11	68526368	68526467	4817993	0	+	0.484848	(0.476,0.515]	chr11	448931	33	INTRON	INTRON	PPP6R3	ENSG00000110075.15	ENST00000530427.5:ENST00000528635.5:ENST00000529907.5:ENST00000533127.5:ENST00000534534.5:ENST00000529344.5:ENST00000524845.5:ENST00000393800.7:ENST00000265637.8:ENST00000524904.5:ENST00000393801.7:ENST00000265636.9:ENST00000529710.5:ENST00000527403.6:ENST00000525050.5:ENST00000527069.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	88	2	3.17628	4.562825	5.94937	3.6008e-4	5.50774e-5	0.0169207	0.0065165
chr17	30732608	30732708	6589811	0	+	0.44	(0.408,0.44]	chr17	640844	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	SUZ12P1	ENSG00000264538.7	ENST00000578070.5:ENST00000579526.5:ENST00000690405.1:ENST00000497969.6:ENST00000578195.6	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	2	88	2	3.19065	4.562715	5.93478	3.2984e-4	7.42058e-5	0.0161352	0.00770735
chr10	73718862	73718960	4651950	0	-	0.408163	(0.378,0.408]	chr10	428203	3	SS5_PROX	SS5_PROX:INTRON	BMS1P4	ENSG00000271816.1:ENSG00000242338.6	ENST00000580790.1:ENST00000584747.5:ENST00000441263.1	lncRNA	lncRNA	lncRNA:transcribed_unprocessed_pseudogene	lncRNA:processed_transcript:transcribed_unprocessed_pseudogene	6	151	2	2.69557	4.562530000000001	6.42949	9.68684e-5	7.97499e-6	0.00826987	0.00213244
chr11	120435508	120435608	4877204	0	+	0.49	(0.476,0.515]	chr11	455856	32	INTRON	INTRON	ARHGEF12	ENSG00000196914.9	ENST00000397843.7:ENST00000356641.7:ENST00000532993.5:ENST00000529970.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	32	2	4.34648	4.562519999999999	4.77856	0.0193566	0.00305743	0.108861	0.0509893
chr11	74968281	74968379	4830300	0	+	0.336735	(0.32,0.35]	chr11	450684	20	INTRON	INTRON	SPCS2	ENSG00000118363.13	ENST00000530257.5:ENST00000526361.1:ENST00000532972.5:ENST00000263672.11:ENST00000528265.1:ENST00000527225.1:ENST00000526883.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	35	2	4.06299	4.56219	5.06139	0.0559439	0.00179023	0.165463	0.0392749
chr7	119762344	119762444	3628962	0	-	0.32	(0.28,0.32]	chr7	337323	98	INTRON	INTRON	LINC02476	ENSG00000225546.6	ENST00000660268.1:ENST00000431071.5:ENST00000426413.2	lncRNA	lncRNA	lncRNA	lncRNA	2	113	2	3.05941	4.562115	6.06482	0.00136004	3.53123e-5	0.0336321	0.00474674
chr1	235431589	235431684	340329	0	+	0.484211	(0.476,0.515]	chr1	39597	4	INTRON	INTRON	TBCE	ENSG00000285053.1:ENSG00000284770.2	ENST00000644055.1:ENST00000645655.1:ENST00000647428.1:ENST00000643418.1:ENST00000646624.1:ENST00000647186.1:ENST00000646528.1:ENST00000645351.1:ENST00000643410.1:ENST00000645205.1:ENST00000645836.1:ENST00000642503.1:ENST00000646281.1:ENST00000644680.1:ENST00000645578.1:ENST00000642431.1:ENST00000644604.1:ENST00000651186.1:ENST00000643125.1:ENST00000406207.5:ENST00000642463.1:ENST00000645899.1:ENST00000647233.1:ENST00000644578.1:ENST00000647418.1:ENST00000645372.1:ENST00000645582.1:ENST00000643994.1:ENST00000642610.2:ENST00000644037.1:ENST00000646463.1:ENST00000366601.8:ENST00000643524.1:ENST00000646536.1:ENST00000643142.1:ENST00000644838.1:ENST00000646286.1:ENST00000646186.1:ENST00000643615.1:ENST00000543662.4:ENST00000646848.1:ENST00000647332.1:ENST00000645551.1:ENST00000646821.1:ENST00000472011.6:ENST00000643238.1:ENST00000646104.1:ENST00000645662.1:ENST00000643993.1:ENST00000645964.1:ENST00000642339.1:ENST00000644217.1:ENST00000642372.1:ENST00000644265.1:ENST00000482230.6:ENST00000644910.1:ENST00000461651.1:ENST00000646842.1:ENST00000647322.1:ENST00000646495.1:ENST00000644126.1:ENST00000643487.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	32	2	4.43093	4.5620650000000005	4.6932	0.00931369	0.00753088	0.0855292	0.074841
chr10	87070554	87070654	4659591	0	-	0.48	(0.476,0.515]	chr10	429362	20	INTRON	INTRON	GLUD1	ENSG00000148672.10	ENST00000277865.5:ENST00000684699.1:ENST00000682396.1:ENST00000683022.1:ENST00000683269.1:ENST00000683256.1:ENST00000681987.1:ENST00000683647.1:ENST00000684032.1:ENST00000684338.1:ENST00000684201.1:ENST00000684690.1:ENST00000682507.1:ENST00000683783.1:ENST00000681988.1:ENST00000682622.1:ENST00000684546.1:ENST00000684372.1:ENST00000682833.1:ENST00000684392.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	32	2	4.43093	4.5620650000000005	4.6932	0.00931369	0.00753088	0.0855292	0.074841
chr15	72691107	72691206	6060518	0	+	0.515152	(0.476,0.515]	chr15	576947	39	INTRON	INTRON	BBS4	ENSG00000140463.14	ENST00000395205.6:ENST00000566400.5:ENST00000565160.5:ENST00000561914.5:ENST00000268057.9:ENST00000567279.5:ENST00000566938.5:ENST00000569440.5:ENST00000563600.5:ENST00000562084.5:ENST00000569338.5:ENST00000566829.1:ENST00000564239.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	32	2	4.43093	4.5620650000000005	4.6932	0.00931369	0.00753088	0.0855292	0.074841
chr5	72307118	72307217	2640681	0	-	0.515152	(0.476,0.515]	chr5	250994	34	INTRON	INTRON	MRPS27	ENSG00000113048.18	ENST00000694990.1:ENST00000694989.1:ENST00000694988.1:ENST00000261413.10:ENST00000513900.6:ENST00000695403.1:ENST00000523654.6:ENST00000694998.1:ENST00000694997.1:ENST00000695298.1:ENST00000694996.1:ENST00000694995.1:ENST00000519143.6:ENST00000694994.1:ENST00000694999.1:ENST00000457646.9:ENST00000695404.1:ENST00000508863.6:ENST00000515404.5:ENST00000522404.5:ENST00000695000.1:ENST00000695001.1:ENST00000520285.5:ENST00000522095.1:ENST00000506957.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	32	2	4.43093	4.5620650000000005	4.6932	0.00931369	0.00753088	0.0855292	0.074841
chr5	133974905	133974998	2725756	0	-	0.483871	(0.476,0.515]	chr5	256430	7	INTRON	INTRON	VDAC1	ENSG00000213585.11	ENST00000265333.8:ENST00000395044.7:ENST00000395047.6:ENST00000492324.1:ENST00000489906.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	32	2	4.43093	4.5620650000000005	4.6932	0.00931369	0.00753088	0.0855292	0.074841
chr5	176452187	176452285	2552210	0	+	0.5	(0.476,0.515]	chr5	243662	34	INTRON	INTRON	FAF2	ENSG00000113194.13	ENST00000510730.5:ENST00000261942.7:ENST00000506061.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	32	2	4.43093	4.5620650000000005	4.6932	0.00931369	0.00753088	0.0855292	0.074841
chrX	18254754	18254853	7770046	0	-	0.484848	(0.476,0.515]	chrX	794146	65	INTRON	INTRON	SCML2	ENSG00000102098.19	ENST00000251900.9:ENST00000665583.1	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.43093	4.5620650000000005	4.6932	0.00931369	0.00753088	0.0855292	0.074841
chr12	57749698	57749795	5339748	0	-	0.463918	(0.44,0.476]	chr12	510914	3	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	CDK4	ENSG00000135446.17	ENST00000312990.10:ENST00000257904.11:ENST00000552713.5:ENST00000549606.5:ENST00000553237.5:ENST00000546489.5:ENST00000551888.5:ENST00000547281.5:ENST00000550419.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	33	2	4.22393	4.561965000000001	4.9	0.0162322	0.00423315	0.109464	0.0572185
chr5	634871	634971	2313606	0	+	0.45	(0.44,0.476]	chr5	223859	1	SS3_PROX	SS3_PROX:INTRON	CEP72	ENSG00000112877.8	ENST00000264935.6	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.22393	4.561965000000001	4.9	0.0162322	0.00423315	0.109464	0.0572185
chr1	120163009	120163109	533699	0	-	0.35	(0.32,0.35]	chr1	62775	4	SS5_PROX	SS5_PROX:INTRON	SEC22B	ENSG00000265808.4	ENST00000578049.4	protein_coding	protein_coding	protein_coding	protein_coding	1	72	2	3.61507	4.5618	5.50853	0.0010959399999999999	6.48785e-4	0.0304174	0.0230814
chr1	86921297	86921396	153659	0	+	0.343434	(0.32,0.35]	chr1	16952	51	INTRON	INTRON	HS2ST1	ENSG00000153936.18	ENST00000370550.10:ENST00000370551.8:ENST00000687893.1:ENST00000693745.1:ENST00000689904.1:ENST00000690674.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	72	2	3.45772	4.5616900000000005	5.66566	0.00128487	6.06695e-4	0.0333518	0.0226059
chr3	57593794	57593894	1706254	0	-	0.5	(0.476,0.515]	chr3	175950	90	INTRON	INTRON	ARF4	ENSG00000168374.11	ENST00000303436.11:ENST00000496292.5:ENST00000489843.1:ENST00000486310.5:ENST00000483848.5:ENST00000463880.1:ENST00000493378.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	66	2	3.62464	4.561655	5.49867	5.079e-4	4.28561e-4	0.0202328	0.0189958
chr7	158930615	158930715	3456897	0	+	0.31	(0.28,0.32]	chr7	323252	1	SS5_PROX	SS5_PROX:INTRON	DYNC2I1	ENSG00000126870.16	ENST00000407559.8:ENST00000444851.5:ENST00000467220.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	203	2	2.08344	4.561225	7.03901	0.00383778	1.25735e-7	0.0542786	1.60844e-4
chr17	59089255	59089342	6801757	0	-	0.356322	(0.35,0.378]	chr17	671807	5	INTRON	INTRON	TRIM37	ENSG00000108395.14	ENST00000393066.7:ENST00000577554.5:ENST00000262294.12:ENST00000393065.6:ENST00000580973.5:ENST00000580122.5:ENST00000580620.5:ENST00000583387.1:ENST00000584889.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	33	2	4.29839	4.5610800000000005	4.82377	0.0294717	0.00325499	0.128055	0.0524329
chr6	15404727	15404827	2824535	0	+	0.42	(0.408,0.44]	chr6	265198	301	INTRON	INTRON	JARID2	ENSG00000008083.14	ENST00000341776.7:ENST00000397311.4	protein_coding	protein_coding	protein_coding	protein_coding	1	71	2	3.28852	4.5610800000000005	5.83364	0.00287185	2.74563e-5	0.0474836	0.00414215
chr11	130303585	130303684	5053753	0	-	0.454545	(0.44,0.476]	chr11	476969	413	INTRON	INTRON	ZBTB44	ENSG00000196323.14	ENST00000357899.9:ENST00000527478.6:ENST00000445008.6:ENST00000525842.5:ENST00000397753.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	32	2	4.33899	4.56096	4.78293	0.0206616	0.00292033	0.110999	0.0494641
chr5	19024901	19025001	2569311	0	-	0.47	(0.44,0.476]	chr5	246196	583	INTRON	INTRON	ENSG00000249174	ENSG00000249174.1	ENST00000504827.1	lncRNA	lncRNA	lncRNA	lncRNA	0	32	2	4.33899	4.56096	4.78293	0.0206616	0.00292033	0.110999	0.0494641
chr3	14471005	14471105	1370095	0	+	0.41	(0.408,0.44]	chr3	144371	24	INTRON	INTRON	SLC6A6	ENSG00000131389.18	ENST00000613060.4:ENST00000618278.4:ENST00000610642.4:ENST00000649500.1:ENST00000622186.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	111	2	2.46587	4.56082	6.65577	0.00280622	1.58103e-6	0.0488779	8.33869e-4
chr5	71053568	71053666	2639196	0	-	0.326531	(0.32,0.35]	chr5	250769	29	INTRON	INTRON	GTF2H2	ENSG00000145736.14	ENST00000274400.9:ENST00000519783.5:ENST00000330280.11:ENST00000518898.6:ENST00000517900.5:ENST00000521942.5:ENST00000522654.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	74	2	3.8861	4.56065	5.2352	0.0028268	1.80108e-4	0.0472361	0.0116696
chr7	139401245	139401343	3438011	0	+	0.255102	[0,0.28]	chr7	320347	22	INTRON	INTRON	LUC7L2:FMC1-LUC7L2	ENSG00000146963.18:ENSG00000269955.2	ENST00000541170.7:ENST00000541515.3:ENST00000619796.4:ENST00000354926.9:ENST00000456182.5:ENST00000263545.7:ENST00000463912.5:ENST00000498518.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	88	2	4.01072	4.560525	5.11033	0.00991388	1.64007e-4	0.0838372	0.0110295
chr12	120875408	120875508	5435618	0	-	0.47	(0.44,0.476]	chr12	519663	399	INTRON	INTRON	SPPL3	ENSG00000157837.16	ENST00000353487.7:ENST00000536996.5:ENST00000543608.5:ENST00000543854.5	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.43525	4.560445	4.68564	0.00897296	0.00816201	0.0849778	0.0766625
chr15	50621090	50621189	6172615	0	-	0.464646	(0.44,0.476]	chr15	588330	9	INTRON	INTRON	TRPM7	ENSG00000092439.16	ENST00000646667.1:ENST00000560955.5:ENST00000560638.1	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.43525	4.560445	4.68564	0.00897296	0.00816201	0.0849778	0.0766625
chr2	108572497	108572596	846227	0	+	0.454545	(0.44,0.476]	chr2	94665	13	INTRON	INTRON	LIMS1	ENSG00000169756.17	ENST00000695516.1:ENST00000544547.6:ENST00000695517.1:ENST00000695518.1	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.43525	4.560445	4.68564	0.00897296	0.00816201	0.0849778	0.0766625
chr2	121761924	121762024	861587	0	+	0.45	(0.44,0.476]	chr2	96573	4	SS5_PROX	SS5_PROX:INTRON	TSN	ENSG00000211460.12	ENST00000455432.5:ENST00000536142.5:ENST00000389682.8:ENST00000467324.5:ENST00000498545.5:ENST00000478165.5:ENST00000490717.5:ENST00000490104.5:ENST00000495112.1:ENST00000409193.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	32	2	4.43525	4.560445	4.68564	0.00897296	0.00816201	0.0849778	0.0766625
chr21	33914971	33915066	7445044	0	-	0.452632	(0.44,0.476]	chr21	759742	6	EXON_MRNA	EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ENSG00000249209:ATP5PO	ENSG00000249209.2:ENSG00000241837.7	ENST00000429238.2:ENST00000290299.7:ENST00000491703.5:ENST00000431254.5:ENST00000652380.1:ENST00000495005.5:ENST00000496044.5:ENST00000484627.5:ENST00000487374.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	32	2	4.43525	4.560445	4.68564	0.00897296	0.00816201	0.0849778	0.0766625
chr6	21102703	21102803	2834076	0	+	0.45	(0.44,0.476]	chr6	265697	371	INTRON	INTRON	CDKAL1	ENSG00000145996.11	ENST00000274695.8:ENST00000378610.1	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.43525	4.560445	4.68564	0.00897296	0.00816201	0.0849778	0.0766625
chr6	150183467	150183567	2997180	0	+	0.47	(0.44,0.476]	chr6	280443	396	INTRON	INTRON	PPP1R14C	ENSG00000198729.5	ENST00000361131.5	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.43525	4.560445	4.68564	0.00897296	0.00816201	0.0849778	0.0766625
chr1	65048573	65048673	475375	0	-	0.37	(0.35,0.378]	chr1	57241	36	INTRON	INTRON	JAK1	ENSG00000162434.13	ENST00000672434.1:ENST00000671954.1:ENST00000673502.1:ENST00000672751.1:ENST00000672099.1	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.40128	4.560404999999999	4.71953	0.0120289	0.0103314	0.0962115	0.0850389
chr1	222721721	222721819	319999	0	+	0.357143	(0.35,0.378]	chr1	36793	20	INTRON	INTRON	BROX	ENSG00000162819.12	ENST00000612948.4:ENST00000340934.10:ENST00000537020.5:ENST00000539697.5:ENST00000426638.1:ENST00000473962.5:ENST00000489191.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	33	2	4.40128	4.560404999999999	4.71953	0.0120289	0.0103314	0.0962115	0.0850389
chr10	121966080	121966177	4709953	0	-	0.350515	(0.35,0.378]	chr10	434593	3	INTRON	INTRON	NSMCE4A	ENSG00000107672.15	ENST00000369023.8:ENST00000489266.5:ENST00000468209.5:ENST00000369017.5:ENST00000464321.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	33	2	4.40128	4.560404999999999	4.71953	0.0120289	0.0103314	0.0962115	0.0850389
chr5	62521168	62521268	2364114	0	+	0.36	(0.35,0.378]	chr5	227967	53	INTRON	INTRON	IPO11	ENSG00000086200.17	ENST00000424533.5:ENST00000325324.11:ENST00000409296.7:ENST00000502862.1:ENST00000511713.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	33	2	4.40128	4.560404999999999	4.71953	0.0120289	0.0103314	0.0962115	0.0850389
chr8	140933294	140933394	4079395	0	-	0.36	(0.35,0.378]	chr8	370568	55	INTRON	INTRON	PTK2	ENSG00000169398.20	ENST00000696786.1:ENST00000522684.5:ENST00000395218.3:ENST00000521059.5:ENST00000519993.5:ENST00000340930.7:ENST00000519419.5:ENST00000524357.5:ENST00000521791.5:ENST00000523067.5:ENST00000520828.5:ENST00000520475.5:ENST00000519881.5:ENST00000520892.5:ENST00000523803.5:ENST00000521907.5:ENST00000517453.5:ENST00000520045.5:ENST00000521395.5:ENST00000521332.5:ENST00000524040.5:ENST00000523679.1:ENST00000524257.5:ENST00000523797.1:ENST00000519635.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	33	2	4.40128	4.560404999999999	4.71953	0.0120289	0.0103314	0.0962115	0.0850389
chrX	102847719	102847819	7696696	0	+	0.36	(0.35,0.378]	chrX	787648	13	INTRON	INTRON	LINC00630	ENSG00000223546.8	ENST00000431616.5:ENST00000440496.5:ENST00000658813.1:ENST00000656628.1:ENST00000416381.1	lncRNA	lncRNA	lncRNA	lncRNA	0	33	2	4.40128	4.560404999999999	4.71953	0.0120289	0.0103314	0.0962115	0.0850389
chr16	58563053	58563152	6495694	0	-	0.363636	(0.35,0.378]	chr16	628558	23	INTRON	INTRON	CNOT1	ENSG00000125107.19	ENST00000317147.10:ENST00000569240.5:ENST00000567188.5:ENST00000441024.6:ENST00000569882.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	35	2	3.97032	4.56024	5.15016	0.0578667	9.78549e-4	0.167723	0.0287765
chr2	32564298	32564395	732937	0	+	0.350515	(0.35,0.378]	chr2	84649	11	EXON_MRNA	EXON_MRNA:INTRON	BIRC6:ENSG00000279544	ENSG00000115760.15:ENSG00000279544.1	ENST00000421745.7:ENST00000471232.5:ENST00000623116.1	protein_coding	protein_coding	protein_coding:TEC	protein_coding:retained_intron:TEC	0	35	2	3.97032	4.56024	5.15016	0.0578667	9.78549e-4	0.167723	0.0287765
chr3	136868823	136868922	1512503	0	+	0.363636	(0.35,0.378]	chr3	158193	9	INTRON	INTRON	NCK1	ENSG00000158092.7	ENST00000481752.6:ENST00000288986.6:ENST00000491539.5:ENST00000485096.5:ENST00000476286.1:ENST00000478862.1:ENST00000460960.1:ENST00000488930.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	35	2	3.97032	4.56024	5.15016	0.0578667	9.78549e-4	0.167723	0.0287765
chr11	46830446	46830546	4948608	0	-	0.42	(0.408,0.44]	chr11	463857	37	INTRON	INTRON	CKAP5	ENSG00000175216.15	ENST00000529230.6:ENST00000312055.9:ENST00000525248.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	33	2	4.12187	4.56012	4.99837	0.0354689	0.00131369	0.137535	0.0333932
chr18	62045555	62045655	6982675	0	-	0.44	(0.408,0.44]	chr18	690827	45	UTR3	UTR3:EXON_MRNA:INTRON	PIGN	ENSG00000197563.11	ENST00000639600.1:ENST00000640252.2:ENST00000639372.1:ENST00000639912.1:ENST00000640876.1:ENST00000357637.10:ENST00000640145.1:ENST00000638977.1:ENST00000640170.1:ENST00000638167.1:ENST00000640540.1:ENST00000639342.1:ENST00000639491.1:ENST00000638435.1:ENST00000639681.1:ENST00000400334.7:ENST00000638936.1:ENST00000639758.1:ENST00000639902.1:ENST00000638858.1:ENST00000638369.1:ENST00000640593.1:ENST00000587942.1:ENST00000640268.1:ENST00000640682.1:ENST00000638904.1:ENST00000638424.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	33	2	4.12187	4.56012	4.99837	0.0354689	0.00131369	0.137535	0.0333932
chr9	41158916	41159012	4259420	0	-	0.322917	(0.32,0.35]	chr9	391938	1	INTRON	INTRON	CBWD6	ENSG00000215126.11	ENST00000613716.4:ENST00000377391.8:ENST00000456520.5:ENST00000382436.7:ENST00000494538.6:ENST00000613125.4:ENST00000610358.4:ENST00000486387.6:ENST00000617722.4:ENST00000467791.5:ENST00000490294.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	36	2	4.04364	4.559965	5.07629	0.034181	0.00468114	0.146815	0.0600108
chr10	11583536	11583636	4555787	0	-	0.3	(0.28,0.32]	chr10	420461	98	INTRON	INTRON	USP6NL	ENSG00000148429.15	ENST00000609104.6:ENST00000606752.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	36	2	4.03345	4.559835	5.08622	0.0704058	0.00227525	0.184298	0.0437013
chr2	25762226	25762325	1084364	0	-	0.30303	(0.28,0.32]	chr2	115897	22	INTRON	INTRON	ASXL2	ENSG00000143970.18	ENST00000435504.9:ENST00000336112.9:ENST00000404843.5:ENST00000673455.1	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.03345	4.559835	5.08622	0.0704058	0.00227525	0.184298	0.0437013
chr2	127312955	127313055	1223046	0	-	0.32	(0.28,0.32]	chr2	130207	38	INTRON	INTRON	MAP3K2	ENSG00000169967.17	ENST00000682094.1:ENST00000409947.5:ENST00000344908.9	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.03345	4.559835	5.08622	0.0704058	0.00227525	0.184298	0.0437013
chr3	149078841	149078941	1840923	0	-	0.34	(0.32,0.35]	chr3	185197	24	INTRON	INTRON	HLTF	ENSG00000071794.16	ENST00000310053.10:ENST00000465259.5:ENST00000392912.6:ENST00000494055.5	protein_coding	protein_coding	protein_coding	protein_coding	1	72	2	3.65187	4.559145	5.46642	0.00127669	5.49434e-4	0.0326395	0.0213049
chr1	243226920	243227020	668435	0	-	0.41	(0.408,0.44]	chr1	79325	12	INTRON	INTRON	CEP170	ENSG00000143702.16	ENST00000366544.5:ENST00000366543.5:ENST00000366542.6:ENST00000522191.5:ENST00000523424.5:ENST00000522522.5:ENST00000522995.1:ENST00000523581.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	66	2	3.67886	4.55913	5.4394	6.50925e-4	3.86173e-4	0.0232863	0.017761
chr16	89888827	89888927	6422593	0	+	0.44	(0.408,0.44]	chr16	616747	2	SS3_PROX	SS3_PROX:INTRON	TCF25	ENSG00000141002.20	ENST00000640279.1:ENST00000263347.11:ENST00000263346.13:ENST00000561958.5:ENST00000614813.4:ENST00000565196.5:ENST00000564652.5:ENST00000568412.5:ENST00000566751.5:ENST00000562256.5:ENST00000568409.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	66	2	3.67886	4.55913	5.4394	6.50925e-4	3.86173e-4	0.0232863	0.017761
chr11	32915990	32916090	4764943	0	+	0.53	(0.515,0.57]	chr11	440609	223	INTRON	INTRON	QSER1	ENSG00000060749.16	ENST00000650167.2:ENST00000399302.7:ENST00000527250.5	protein_coding	protein_coding	protein_coding	protein_coding	1	64	2	3.7003	4.558925	5.41755	3.73715e-4	1.1703e-4	0.0179087	0.00929802
chr2	28941574	28941674	725666	0	+	0.42	(0.408,0.44]	chr2	83876	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	WDR43	ENSG00000163811.12	ENST00000407426.8:ENST00000446643.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	33	2	4.22447	4.558870000000001	4.89327	0.0161655	0.00458906	0.109464	0.0595107
chr3	38005391	38005491	1398460	0	+	0.42	(0.408,0.44]	chr3	146619	2	SS3_PROX	SS3_PROX:INTRON	VILL	ENSG00000136059.16	ENST00000283713.10:ENST00000383759.7:ENST00000465644.5:ENST00000486616.5:ENST00000488209.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	33	2	4.22447	4.558870000000001	4.89327	0.0161655	0.00458906	0.109464	0.0595107
chr6	135211004	135211103	2962471	0	+	0.414141	(0.408,0.44]	chr6	278661	72	INTRON	INTRON	MYB	ENSG00000118513.20	ENST00000341911.10:ENST00000442647.7:ENST00000316528.12:ENST00000616088.4:ENST00000339290.9:ENST00000367812.6:ENST00000463282.6:ENST00000525477.5:ENST00000533837.5:ENST00000367814.8:ENST00000525369.5:ENST00000438901.6:ENST00000525514.5:ENST00000526320.5:ENST00000526889.5:ENST00000529586.5:ENST00000531519.5:ENST00000533808.5:ENST00000528343.5:ENST00000524588.5:ENST00000525002.5:ENST00000525940.5:ENST00000526187.5:ENST00000526565.5:ENST00000528015.5:ENST00000528140.5:ENST00000528345.5:ENST00000528774.5:ENST00000529262.5:ENST00000531634.5:ENST00000531737.5:ENST00000533384.5:ENST00000533624.5:ENST00000534044.5:ENST00000534121.5:ENST00000531845.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	33	2	4.22447	4.558870000000001	4.89327	0.0161655	0.00458906	0.109464	0.0595107
chrX	73950153	73950252	7682156	0	+	0.363636	(0.35,0.378]	chrX	786624	7	INTRON	INTRON	JPX	ENSG00000225470.8	ENST00000664637.1:ENST00000639185.1:ENST00000655090.1:ENST00000640437.1:ENST00000660546.1:ENST00000667886.1:ENST00000660840.1:ENST00000657179.1:ENST00000670506.1:ENST00000657910.1:ENST00000662120.1:ENST00000671207.1:ENST00000659254.1:ENST00000656624.1:ENST00000667573.1:ENST00000660856.1:ENST00000660836.1:ENST00000668590.1:ENST00000658649.1:ENST00000414209.6:ENST00000654137.1:ENST00000670994.1:ENST00000653479.1:ENST00000602772.5:ENST00000655879.1:ENST00000657372.1:ENST00000657096.1:ENST00000602985.6:ENST00000670685.1:ENST00000670503.1:ENST00000663027.1:ENST00000654995.1:ENST00000602895.6:ENST00000654374.1:ENST00000660087.1:ENST00000665032.1:ENST00000671336.1:ENST00000671476.1:ENST00000667057.1:ENST00000670192.1:ENST00000670464.1:ENST00000665345.1:ENST00000661546.1:ENST00000662543.1:ENST00000602938.6:ENST00000664295.1:ENST00000654005.1:ENST00000669149.1:ENST00000659852.1:ENST00000656509.1:ENST00000602294.6:ENST00000667294.1:ENST00000663470.1:ENST00000602920.6:ENST00000671021.1:ENST00000659849.1:ENST00000667937.1:ENST00000661130.1:ENST00000654196.1:ENST00000655994.1:ENST00000659373.1:ENST00000662239.1:ENST00000670805.1:ENST00000656263.1:ENST00000653069.1:ENST00000657638.1:ENST00000653808.1:ENST00000653929.1:ENST00000653885.1:ENST00000659023.1:ENST00000602546.5:ENST00000664328.1:ENST00000659622.1:ENST00000671518.1:ENST00000670408.1	lncRNA	lncRNA	lncRNA	lncRNA	1	70	2	3.31736	4.558415	5.79947	0.00211072	2.36402e-4	0.0425419	0.0140941
chr1	227027122	227027216	648769	0	-	0.297872	(0.28,0.32]	chr1	76924	6	INTRON	INTRON	CDC42BPA	ENSG00000143776.20	ENST00000366766.8:ENST00000366769.7:ENST00000334218.9:ENST00000366767.7:ENST00000448940.5:ENST00000442054.5:ENST00000366764.8:ENST00000429440.5:ENST00000441725.1	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.12807	4.558395	4.98872	0.0338135	0.00838468	0.146709	0.0774402
chr10	133468622	133468715	4540669	0	+	0.301075	(0.28,0.32]	chr10	419150	8	UTR3	UTR3:EXON_MRNA:INTRON	SCART1	ENSG00000214279.13	ENST00000463137.5:ENST00000640237.1:ENST00000488261.6:ENST00000462252.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	36	2	4.12807	4.558395	4.98872	0.0338135	0.00838468	0.146709	0.0774402
chr5	119292995	119293095	2461840	0	+	0.31	(0.28,0.32]	chr5	235842	237	INTRON	INTRON	TNFAIP8	ENSG00000145779.8	ENST00000274456.6:ENST00000388882.5	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.12807	4.558395	4.98872	0.0338135	0.00838468	0.146709	0.0774402
chr4	169582189	169582288	2296851	0	-	0.373737	(0.35,0.378]	chr4	222242	9	INTRON	INTRON	NEK1	ENSG00000137601.18	ENST00000687054.1:ENST00000507142.6:ENST00000686697.1:ENST00000688934.1:ENST00000685111.1:ENST00000687528.1:ENST00000687643.1:ENST00000439128.6:ENST00000511633.5:ENST00000510533.5:ENST00000512193.5:ENST00000693604.1:ENST00000692450.1:ENST00000687219.1:ENST00000693085.1:ENST00000509912.5:ENST00000690631.1:ENST00000688487.1:ENST00000688653.1:ENST00000692868.1:ENST00000692218.1:ENST00000505119.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	34	2	4.08816	4.55824	5.02832	0.046021	0.00156444	0.149888	0.0365263
chr6	89819305	89819405	3162035	0	-	0.6	(0.57,1]	chr6	294887	4	SS5_PROX	SS5_PROX:INTRON	MDN1	ENSG00000112159.12	ENST00000369393.8:ENST00000629399.2:ENST00000439638.1	protein_coding	protein_coding	protein_coding	protein_coding	6	94	2	2.67384	4.55799	6.44214	5.52783e-5	1.44402e-8	0.00609037	3.74243e-5
chr19	12631052	12631151	7021854	0	+	0.393939	(0.378,0.408]	chr19	698093	19	UTR3	UTR3:EXON_MRNA	ZNF791	ENSG00000173875.14	ENST00000446165.2:ENST00000343325.9	protein_coding	protein_coding	protein_coding	protein_coding	1	67	2	3.56208	4.557980000000001	5.55388	6.94246e-4	5.01023e-4	0.0240761	0.0206993
chr1	162503156	162503253	238047	0	+	0.309278	(0.28,0.32]	chr1	28660	17	INTRON	INTRON	UHMK1	ENSG00000152332.16	ENST00000545294.5:ENST00000538489.5:ENST00000489294.2:ENST00000282169.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	34	2	4.50981	4.557955	4.6061	0.0275554	0.0102724	0.123904	0.089002
chr11	85633885	85633985	4841870	0	+	0.32	(0.28,0.32]	chr11	451684	4	SS3_PROX	SS3_PROX:INTRON	TMEM126B	ENSG00000171204.13	ENST00000393375.5:ENST00000358867.11:ENST00000531477.5:ENST00000531718.5:ENST00000530783.5:ENST00000528361.5:ENST00000534341.1:ENST00000526822.5:ENST00000529197.1:ENST00000531274.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	34	2	4.50981	4.557955	4.6061	0.0275554	0.0102724	0.123904	0.089002
chr13	113257218	113257317	5548785	0	+	0.282828	(0.28,0.32]	chr13	530211	17	INTRON	INTRON	CUL4A	ENSG00000139842.15	ENST00000375441.7:ENST00000326335.8:ENST00000451881.5:ENST00000617546.4:ENST00000375440.9:ENST00000472083.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	34	2	4.50981	4.557955	4.6061	0.0275554	0.0102724	0.123904	0.089002
chr16	80993745	80993844	6530562	0	-	0.313131	(0.28,0.32]	chr16	632657	14	INTRON	INTRON	CMC2	ENSG00000103121.9	ENST00000219400.8:ENST00000563779.5:ENST00000486645.5:ENST00000570195.5:ENST00000566047.5:ENST00000561614.5:ENST00000569187.5:ENST00000570086.5:ENST00000564249.5:ENST00000565650.5:ENST00000567593.5:ENST00000568228.5:ENST00000565914.5:ENST00000565108.5:ENST00000565925.5:ENST00000564174.5:ENST00000565613.5:ENST00000569666.5:ENST00000562713.3:ENST00000562828.5:ENST00000630396.1:ENST00000565514.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	34	2	4.50981	4.557955	4.6061	0.0275554	0.0102724	0.123904	0.089002
chr17	16182868	16182968	6734908	0	-	0.31	(0.28,0.32]	chr17	660738	105	INTRON	INTRON	NCOR1	ENSG00000141027.22	ENST00000268712.8:ENST00000395851.5:ENST00000395848.5:ENST00000411510.5:ENST00000582357.5:ENST00000436828.5:ENST00000460276.5:ENST00000585296.1:ENST00000579974.1:ENST00000430577.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	34	2	4.50981	4.557955	4.6061	0.0275554	0.0102724	0.123904	0.089002
chr5	149515070	149515168	2750710	0	-	0.295918	(0.28,0.32]	chr5	259043	15	INTRON	INTRON	CSNK1A1	ENSG00000113712.19	ENST00000261798.10:ENST00000377843.8:ENST00000657001.1:ENST00000515768.6:ENST00000606719.6:ENST00000657462.1:ENST00000661952.1:ENST00000504676.5:ENST00000515435.5:ENST00000662268.1:ENST00000657706.1:ENST00000606299.2:ENST00000670598.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	34	2	4.50981	4.557955	4.6061	0.0275554	0.0102724	0.123904	0.089002
chr6	5441607	5441707	2794476	0	+	0.31	(0.28,0.32]	chr6	263681	99	INTRON	INTRON	FARS2	ENSG00000145982.13	ENST00000324331.10:ENST00000648580.1:ENST00000274680.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	34	2	4.50981	4.557955	4.6061	0.0275554	0.0102724	0.123904	0.089002
chr9	91901784	91901884	4284783	0	-	0.32	(0.28,0.32]	chr9	393921	147	INTRON	INTRON	ROR2	ENSG00000169071.15	ENST00000375715.5:ENST00000375708.4:ENST00000495386.5:ENST00000546883.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	34	2	4.50981	4.557955	4.6061	0.0275554	0.0102724	0.123904	0.089002
chr16	75023766	75023866	6389666	0	+	0.41	(0.408,0.44]	chr16	614482	210	INTRON	INTRON	ZNRF1	ENSG00000186187.12	ENST00000335325.9:ENST00000320619.10:ENST00000567962.5:ENST00000566250.5:ENST00000564320.1:ENST00000568511.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	32	2	4.33238	4.55793	4.78348	0.0218901	0.00290352	0.11491	0.0494641
chr19	1367814	1367909	6994837	0	+	0.421053	(0.408,0.44]	chr19	693084	2	INTRON	INTRON	PWWP3A	ENSG00000160953.17	ENST00000591337.7:ENST00000591433.6:ENST00000591806.6:ENST00000652273.1:ENST00000415183.7:ENST00000587460.6:ENST00000627377.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	32	2	4.33238	4.55793	4.78348	0.0218901	0.00290352	0.11491	0.0494641
chr19	47653770	47653870	7086209	0	+	0.42	(0.408,0.44]	chr19	709045	458	INTRON	INTRON	ENSG00000268746	ENSG00000268746.1	ENST00000599924.1	lncRNA	lncRNA	lncRNA	lncRNA	0	32	2	4.33238	4.55793	4.78348	0.0218901	0.00290352	0.11491	0.0494641
chr2	32380790	32380889	731017	0	+	0.414141	(0.408,0.44]	chr2	84286	1	INTRON	INTRON	BIRC6	ENSG00000115760.15	ENST00000421745.7:ENST00000648282.1	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.33238	4.55793	4.78348	0.0218901	0.00290352	0.11491	0.0494641
chr2	38370443	38370543	1099280	0	-	0.41	(0.408,0.44]	chr2	117880	110	INTRON	INTRON	ATL2	ENSG00000119787.14	ENST00000378954.9:ENST00000406122.5:ENST00000405384.6:ENST00000402054.5:ENST00000419554.6:ENST00000651368.1:ENST00000452935.6:ENST00000449130.5:ENST00000443098.5:ENST00000456736.5:ENST00000472097.1:ENST00000451483.1:ENST00000416222.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	32	2	4.33238	4.55793	4.78348	0.0218901	0.00290352	0.11491	0.0494641
chr7	139395903	139396003	3437956	0	+	0.41	(0.408,0.44]	chr7	320340	194	INTRON	INTRON	LUC7L2:FMC1-LUC7L2	ENSG00000146963.18:ENSG00000269955.2	ENST00000541170.7:ENST00000541515.3:ENST00000608368.5:ENST00000619796.4:ENST00000354926.9:ENST00000456182.5:ENST00000263545.7:ENST00000463912.5:ENST00000498518.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	32	2	4.33238	4.55793	4.78348	0.0218901	0.00290352	0.11491	0.0494641
chr4	17823384	17823465	1927185	0	+	0.197531	[0,0.28]	chr4	193745	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NCAPG	ENSG00000109805.10	ENST00000251496.7:ENST00000514176.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	36	2	4.20106	4.5576	4.91414	0.0695895	0.0064519	0.184298	0.0730725
chr5	66073753	66073849	2372348	0	+	0.260417	[0,0.28]	chr5	228617	11	INTRON	INTRON	ERBIN	ENSG00000112851.15	ENST00000380943.6:ENST00000416865.6:ENST00000380935.5:ENST00000284037.10:ENST00000380938.6:ENST00000511297.5:ENST00000506030.5:ENST00000508515.1:ENST00000503913.5:ENST00000512354.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	36	2	4.20106	4.5576	4.91414	0.0695895	0.0064519	0.184298	0.0730725
chr7	127826247	127826347	3404153	0	+	0.21	[0,0.28]	chr7	318140	183	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000468166.5:ENST00000465900.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	36	2	4.20106	4.5576	4.91414	0.0695895	0.0064519	0.184298	0.0730725
chr8	31162211	31162310	3729252	0	+	0.191919	[0,0.28]	chr8	346704	43	INTRON	INTRON	WRN	ENSG00000165392.11	ENST00000650667.1:ENST00000298139.7:ENST00000521620.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	36	2	4.20106	4.5576	4.91414	0.0695895	0.0064519	0.184298	0.0730725
chr17	20013448	20013548	6571826	0	+	0.33	(0.32,0.35]	chr17	639047	24	INTRON	INTRON	SPECC1	ENSG00000128487.19	ENST00000677148.1:ENST00000679048.1:ENST00000678019.1:ENST00000678315.1:ENST00000678321.1:ENST00000676570.1:ENST00000678651.1:ENST00000679049.1:ENST00000472876.5:ENST00000467722.3:ENST00000583528.6:ENST00000680019.1:ENST00000395527.9:ENST00000681593.1:ENST00000680830.1:ENST00000680124.1:ENST00000583482.7:ENST00000679255.1:ENST00000681202.1:ENST00000677914.1:ENST00000578321.2:ENST00000680374.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	96	2	3.14789	4.5573749999999995	5.96686	5.00642e-4	1.77352e-4	0.020217099999999998	0.0121697
chr1	77614951	77615051	492780	0	-	0.42	(0.408,0.44]	chr1	58292	299	INTRON	INTRON	ZZZ3	ENSG00000036549.13	ENST00000370801.8:ENST00000481346.5:ENST00000476275.5:ENST00000370798.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	32	2	4.4358	4.557370000000001	4.67894	0.00893097	0.0087648	0.0849778	0.0788605
chr7	4978793	4978891	3271083	0	+	0.418367	(0.408,0.44]	chr7	304011	20	INTRON	INTRON	RNF216P1	ENSG00000196204.12	ENST00000406089.6:ENST00000493407.5:ENST00000477090.5:ENST00000404006.5:ENST00000403969.5:ENST00000494947.5:ENST00000429902.5:ENST00000406608.2	lncRNA	lncRNA	lncRNA	lncRNA	0	32	2	4.4358	4.557370000000001	4.67894	0.00893097	0.0087648	0.0849778	0.0788605
chr7	96262502	96262602	3575659	0	-	0.41	(0.408,0.44]	chr7	333065	272	INTRON	INTRON	SLC25A13	ENSG00000004864.14	ENST00000265631.10:ENST00000416240.6:ENST00000472162.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	32	2	4.4358	4.557370000000001	4.67894	0.00893097	0.0087648	0.0849778	0.0788605
chrX	119601672	119601771	7873071	0	-	0.414141	(0.408,0.44]	chrX	801774	87	INTRON	INTRON	NKRF	ENSG00000186416.18	ENST00000304449.8:ENST00000542113.3:ENST00000688521.1	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.4358	4.557370000000001	4.67894	0.00893097	0.0087648	0.0849778	0.0788605
chr2	86441752	86441834	822933	0	+	0.597561	(0.57,1]	chr2	91888	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	KDM3A	ENSG00000115548.17	ENST00000452034.5:ENST00000409556.5:ENST00000312912.10:ENST00000441719.5:ENST00000409064.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	52	2	4.43942	4.556925	4.67443	8.07515e-4	1.72912e-6	0.0258804	8.78167e-4
chr6	106296796	106296896	3177872	0	-	0.36	(0.35,0.378]	chr6	296189	33	INTRON	INTRON	ATG5	ENSG00000057663.16	ENST00000636437.1:ENST00000636335.1:ENST00000369070.5:ENST00000369076.8:ENST00000635758.2:ENST00000360666.6:ENST00000343245.7:ENST00000646025.1:ENST00000613993.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	34	2	4.19022	4.556884999999999	4.92355	0.0209891	0.00573514	0.122348	0.0657377
chr7	56051037	56051137	3536497	0	-	0.37	(0.35,0.378]	chr7	329839	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	PSPH	ENSG00000146733.14	ENST00000437355.6:ENST00000275605.8:ENST00000395471.7:ENST00000421312.5:ENST00000419984.6:ENST00000424596.1:ENST00000416592.1:ENST00000413218.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	34	2	4.19022	4.556884999999999	4.92355	0.0209891	0.00573514	0.122348	0.0657377
chr3	47970484	47970584	1686309	0	-	0.48	(0.476,0.515]	chr3	172245	387	INTRON	INTRON	MAP4	ENSG00000047849.22	ENST00000683076.1:ENST00000395734.7:ENST00000426837.6:ENST00000360240.10:ENST00000423088.5:ENST00000633710.1	protein_coding	protein_coding	protein_coding	protein_coding	1	67	2	3.29939	4.556794999999999	5.8142	0.00211868	1.0551e-4	0.0425644	0.00920724
chr11	86341316	86341415	4842757	0	+	0.252525	[0,0.28]	chr11	451825	34	INTRON	INTRON	HIKESHI	ENSG00000149196.17	ENST00000533986.5:ENST00000278483.8:ENST00000531485.5:ENST00000528004.5:ENST00000530208.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	36	2	4.28915	4.55674	4.82433	0.0319595	0.0200334	0.14477	0.109608
chr12	91326701	91326801	5382474	0	-	0.23	[0,0.28]	chr12	513439	495	INTRON	INTRON	ENSG00000289605	ENSG00000289605.1	ENST00000685093.1	lncRNA	lncRNA	lncRNA	lncRNA	0	36	2	4.28915	4.55674	4.82433	0.0319595	0.0200334	0.14477	0.109608
chr2	61296499	61296599	1128775	0	-	0.22	[0,0.28]	chr2	121341	3	SS5_PROX	SS5_PROX:INTRON	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000472706.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	36	2	4.28915	4.55674	4.82433	0.0319595	0.0200334	0.14477	0.109608
chr2	135926594	135926694	1234114	0	-	0.19	[0,0.28]	chr2	131401	17	INTRON	INTRON	DARS1	ENSG00000115866.11	ENST00000264161.9:ENST00000441323.5:ENST00000456565.5	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.28915	4.55674	4.82433	0.0319595	0.0200334	0.14477	0.109608
chr21	21151869	21151969	7380528	0	+	0.24	[0,0.28]	chr21	752602	1529	INTRON	INTRON	NCAM2	ENSG00000154654.15	ENST00000400546.6	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.28915	4.55674	4.82433	0.0319595	0.0200334	0.14477	0.109608
chr3	38403276	38403376	1400060	0	+	0.27	[0,0.28]	chr3	146883	19	INTRON	INTRON	XYLB	ENSG00000093217.11	ENST00000207870.8:ENST00000650590.1:ENST00000424034.5:ENST00000649234.1:ENST00000472721.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	36	2	4.28915	4.55674	4.82433	0.0319595	0.0200334	0.14477	0.109608
chr6	78968143	78968242	3140947	0	-	0.262626	[0,0.28]	chr6	292762	17	INTRON	INTRON	PHIP	ENSG00000146247.14	ENST00000275034.5:ENST00000479165.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	36	2	4.28915	4.55674	4.82433	0.0319595	0.0200334	0.14477	0.109608
chr8	27824504	27824604	3927198	0	-	0.25	[0,0.28]	chr8	359598	9	INTRON	INTRON	PBK	ENSG00000168078.10	ENST00000301905.9:ENST00000522944.5:ENST00000524266.1:ENST00000521226.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	36	2	4.28915	4.55674	4.82433	0.0319595	0.0200334	0.14477	0.109608
chr2	95968038	95968137	1179499	0	-	0.40404	(0.378,0.408]	chr2	126083	51	INTRON	INTRON	ANKRD36C	ENSG00000174501.15	ENST00000295246.7:ENST00000456556.5:ENST00000528268.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	67	2	3.5186	4.556710000000001	5.59482	8.45009e-4	4.23783e-4	0.0263813	0.0189958
chr1	229476032	229476132	652996	0	-	0.51	(0.476,0.515]	chr1	77338	3	SS3_PROX	SS3_PROX:INTRON	NUP133	ENSG00000069248.12	ENST00000261396.6	protein_coding	protein_coding	protein_coding	protein_coding	1	66	2	3.44784	4.556445	5.66505	0.00113238	2.08835e-4	0.0308465	0.0131276
chr8	86345422	86345522	3789278	0	+	0.59	(0.57,1]	chr8	351308	21	INTRON	INTRON	WWP1	ENSG00000123124.14	ENST00000517970.6:ENST00000523863.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	25	2	4.31277	4.55644	4.80011	0.00346264	6.07135e-4	0.0539802	0.0226059
chr11	118767330	118767429	5046128	0	-	0.292929	(0.28,0.32]	chr11	475781	16	INTRON	INTRON	DDX6	ENSG00000110367.14	ENST00000534980.7:ENST00000620157.4:ENST00000526070.2	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.4263	4.555785	4.68527	0.0330296	0.00819419	0.133816	0.0810802
chr13	45176696	45176796	5478840	0	+	0.3	(0.28,0.32]	chr13	524950	245	INTRON	INTRON	GTF2F2	ENSG00000188342.12	ENST00000340473.8	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.4263	4.555785	4.68527	0.0330296	0.00819419	0.133816	0.0810802
chr19	6078334	6078434	7126500	0	-	0.29	(0.28,0.32]	chr19	717528	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	RFX2	ENSG00000087903.13	ENST00000303657.10:ENST00000592546.5:ENST00000589742.5:ENST00000586806.1:ENST00000587321.1:ENST00000586302.5:ENST00000592172.5:ENST00000586940.1:ENST00000592473.5:ENST00000592883.5:ENST00000593241.5:ENST00000587181.1:ENST00000590822.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	34	2	4.4263	4.555785	4.68527	0.0330296	0.00819419	0.133816	0.0810802
chr21	41909158	41909258	7466827	0	-	0.31	(0.28,0.32]	chr21	760835	3	SS5_PROX	SS5_PROX:INTRON	C2CD2	ENSG00000157617.17	ENST00000380486.4:ENST00000329623.11:ENST00000482084.5:ENST00000467074.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	34	2	4.4263	4.555785	4.68527	0.0330296	0.00819419	0.133816	0.0810802
chr22	42241826	42241926	7593279	0	-	0.31	(0.28,0.32]	chr22	777718	261	INTRON	INTRON	TCF20	ENSG00000100207.21	ENST00000359486.8:ENST00000677622.1:ENST00000683686.1:ENST00000675876.1:ENST00000515426.1	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.4263	4.555785	4.68527	0.0330296	0.00819419	0.133816	0.0810802
chr6	8095595	8095695	3054790	0	-	0.31	(0.28,0.32]	chr6	284135	1	SS3_PROX	SS3_PROX:INTRON	EEF1E1	ENSG00000124802.12	ENST00000429723.6:ENST00000502429.5:ENST00000379715.10:ENST00000507463.1:ENST00000515633.1	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.4263	4.555785	4.68527	0.0330296	0.00819419	0.133816	0.0810802
chr9	111378279	111378379	4314191	0	-	0.32	(0.28,0.32]	chr9	396647	3	SS5_PROX	SS5_PROX:INTRON	ECPAS	ENSG00000136813.15	ENST00000684092.1:ENST00000338205.9:ENST00000259335.8	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.4263	4.555785	4.68527	0.0330296	0.00819419	0.133816	0.0810802
chr3	177029106	177029204	1870724	0	-	0.418367	(0.408,0.44]	chr3	187282	14	INTRON	INTRON	TBL1XR1	ENSG00000177565.18	ENST00000636864.1:ENST00000457928.7:ENST00000430069.5:ENST00000637659.1:ENST00000673974.1:ENST00000631253.2:ENST00000352800.10:ENST00000422442.6:ENST00000626758.1:ENST00000636348.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	66	2	3.46104	4.55577	5.6505	0.00105552	2.70553e-4	0.0299229	0.0150813
chr12	71773458	71773558	5168914	0	+	0.29	(0.28,0.32]	chr12	489660	1	SS3_PROX	SS3_PROX:INTRON	RAB21	ENSG00000080371.6	ENST00000261263.5:ENST00000358546.3:ENST00000547246.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	77	2	3.80982	4.555675	5.30153	0.00332518	3.09593e-4	0.0512081	0.0157609
chr15	50562407	50562507	6171992	0	-	0.38	(0.378,0.408]	chr15	588187	2	INTRON	INTRON	TRPM7	ENSG00000092439.16	ENST00000561267.5:ENST00000646667.1:ENST00000560955.5:ENST00000561443.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	73	2	3.57821	4.5556	5.53299	9.60401e-4	1.47095e-4	0.0282401	0.0105341
chr1	96739553	96739653	168119	0	+	0.31	(0.28,0.32]	chr1	18215	156	INTRON	INTRON	PTBP2	ENSG00000117569.19	ENST00000482253.5:ENST00000675735.1:ENST00000609116.5:ENST00000674951.1:ENST00000675080.1:ENST00000426398.3:ENST00000460706.5:ENST00000370197.5:ENST00000370198.5:ENST00000476419.5:ENST00000676292.1:ENST00000676096.1:ENST00000675365.1:ENST00000674579.1:ENST00000675401.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	34	2	4.52233	4.555540000000001	4.58875	0.0230574	0.0129279	0.118056	0.0990564
chr10	68684366	68684465	4442134	0	+	0.282828	(0.28,0.32]	chr10	409570	10	INTRON	INTRON	TET1	ENSG00000138336.9	ENST00000373644.5	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.52233	4.555540000000001	4.58875	0.0230574	0.0129279	0.118056	0.0990564
chr11	134200221	134200321	5054938	0	-	0.31	(0.28,0.32]	chr11	477187	51	INTRON	INTRON	NCAPD3	ENSG00000151503.14	ENST00000534548.7:ENST00000692494.1:ENST00000688672.1:ENST00000534532.7:ENST00000689387.1:ENST00000688263.1:ENST00000525964.7:ENST00000690149.1:ENST00000687480.1:ENST00000690743.1:ENST00000685324.1:ENST00000689205.1:ENST00000525432.2:ENST00000687155.1:ENST00000685119.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	34	2	4.52233	4.555540000000001	4.58875	0.0230574	0.0129279	0.118056	0.0990564
chr12	91364939	91365039	5382858	0	-	0.29	(0.28,0.32]	chr12	513446	2	SS5_PROX	SS5_PROX:INTRON	ENSG00000289605	ENSG00000289605.1	ENST00000685093.1	lncRNA	lncRNA	lncRNA	lncRNA	0	34	2	4.52233	4.555540000000001	4.58875	0.0230574	0.0129279	0.118056	0.0990564
chr12	122576794	122576894	5241108	0	+	0.29	(0.28,0.32]	chr12	497725	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	KNTC1	ENSG00000184445.12	ENST00000450485.6:ENST00000333479.12	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.52233	4.555540000000001	4.58875	0.0230574	0.0129279	0.118056	0.0990564
chr17	28100026	28100126	6583095	0	+	0.32	(0.28,0.32]	chr17	639837	381	INTRON	INTRON	NLK	ENSG00000087095.13	ENST00000407008.8:ENST00000496808.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	34	2	4.52233	4.555540000000001	4.58875	0.0230574	0.0129279	0.118056	0.0990564
chr2	178437379	178437478	930505	0	+	0.313131	(0.28,0.32]	chr2	102184	23	INTRON	INTRON	CHROMR	ENSG00000223960.8	ENST00000453026.7:ENST00000671256.1	lncRNA	lncRNA	lncRNA	lncRNA	0	34	2	4.52233	4.555540000000001	4.58875	0.0230574	0.0129279	0.118056	0.0990564
chr22	47696362	47696462	7540009	0	+	0.31	(0.28,0.32]	chr22	770705	50	INTRON	INTRON	ENSG00000224271	ENSG00000224271.7	ENST00000664761.1:ENST00000651071.1:ENST00000650683.1:ENST00000651536.1:ENST00000652499.1:ENST00000652656.1:ENST00000652072.1:ENST00000651445.1:ENST00000423737.5:ENST00000650834.1:ENST00000650660.1:ENST00000651056.1:ENST00000652611.1:ENST00000652399.1:ENST00000652123.1:ENST00000651311.1:ENST00000651458.1:ENST00000652505.1:ENST00000652702.2:ENST00000652334.1:ENST00000652030.2:ENST00000651403.1:ENST00000652228.1:ENST00000651124.1:ENST00000650972.1:ENST00000651985.1:ENST00000651754.1:ENST00000651637.1:ENST00000650924.1:ENST00000651003.1:ENST00000652168.1:ENST00000651948.2:ENST00000651293.1:ENST00000651939.1:ENST00000650787.1:ENST00000651517.1:ENST00000651662.1:ENST00000652690.1:ENST00000651638.1:ENST00000670853.1:ENST00000652750.1:ENST00000652080.1:ENST00000651294.1:ENST00000652164.1:ENST00000651538.1:ENST00000650775.1:ENST00000651983.1:ENST00000651033.1:ENST00000651584.1	lncRNA	lncRNA	lncRNA	lncRNA	0	34	2	4.52233	4.555540000000001	4.58875	0.0230574	0.0129279	0.118056	0.0990564
chr4	126452133	126452233	2235226	0	-	0.31	(0.28,0.32]	chr4	219005	168	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1:ENST00000651327.1	lncRNA	lncRNA	lncRNA	lncRNA	0	34	2	4.52233	4.555540000000001	4.58875	0.0230574	0.0129279	0.118056	0.0990564
chr5	37646323	37646423	2343067	0	+	0.29	(0.28,0.32]	chr5	226260	407	INTRON	INTRON	WDR70	ENSG00000082068.9	ENST00000504564.1:ENST00000511906.5:ENST00000265107.9:ENST00000510699.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	34	2	4.52233	4.555540000000001	4.58875	0.0230574	0.0129279	0.118056	0.0990564
chr7	155759322	155759421	3453061	0	+	0.30303	(0.28,0.32]	chr7	322730	123	INTRON	INTRON	RBM33	ENSG00000184863.11	ENST00000401878.8:ENST00000392761.3:ENST00000438356.1:ENST00000341148.7	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	4.01002	4.5553550000000005	5.10069	0.0434868	0.00610574	0.162255	0.0676501
chrX	74288801	74288900	7841576	0	-	0.363636	(0.35,0.378]	chrX	799755	12	INTRON	INTRON	FTX	ENSG00000230590.12	ENST00000603672.5:ENST00000430772.6:ENST00000602776.6:ENST00000638681.1:ENST00000652319.1:ENST00000661133.1:ENST00000652071.1:ENST00000602812.6:ENST00000651703.1:ENST00000653018.1:ENST00000658448.1:ENST00000662240.1:ENST00000652527.1:ENST00000651451.1:ENST00000657611.1:ENST00000660481.1:ENST00000659574.1:ENST00000661084.1:ENST00000662494.1:ENST00000670936.1:ENST00000602420.6:ENST00000658203.1:ENST00000638985.1:ENST00000691187.1:ENST00000603037.2:ENST00000687056.1:ENST00000654870.2:ENST00000652540.1:ENST00000652331.2:ENST00000657070.1:ENST00000665069.1:ENST00000652496.1:ENST00000653874.2:ENST00000661335.1:ENST00000664123.1:ENST00000658439.1:ENST00000666535.1:ENST00000652970.1:ENST00000423992.3:ENST00000665313.2:ENST00000651140.1:ENST00000693483.1:ENST00000656041.1:ENST00000657327.1:ENST00000664343.1:ENST00000656977.1:ENST00000671343.1:ENST00000659407.1:ENST00000671067.1:ENST00000660829.1:ENST00000671385.1:ENST00000418855.6:ENST00000602576.5:ENST00000660224.1:ENST00000662864.1:ENST00000429124.6:ENST00000668224.1:ENST00000659390.1:ENST00000455395.6:ENST00000659012.1	lncRNA	lncRNA	lncRNA	lncRNA	1	69	2	3.66151	4.55535	5.44919	9.66659e-4	4.717e-4	0.0282401	0.0196294
chr9	72151879	72151979	4141290	0	+	0.45	(0.44,0.476]	chr9	377412	18	INTRON	INTRON	GDA	ENSG00000119125.17	ENST00000545168.5:ENST00000238018.8:ENST00000358399.8:ENST00000376986.5:ENST00000475764.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	72	2	2.9586	4.555	6.1514	0.00758318	2.2546e-5	0.0773151	0.00386909
chr17	47668703	47668801	6622776	0	+	0.316327	(0.28,0.32]	chr17	646051	4	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	KPNB1	ENSG00000108424.11	ENST00000535458.6:ENST00000583648.6:ENST00000290158.9:ENST00000540627.5:ENST00000582097.5:ENST00000677036.1:ENST00000583013.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	82	2	3.2685	4.554795	5.84109	0.00432734	1.04715e-4	0.0579331	0.00863456
chr17	18921122	18921222	6570389	0	+	0.4	(0.378,0.408]	chr17	638882	32	INTRON	INTRON	PRPSAP2	ENSG00000141127.15	ENST00000610773.4:ENST00000432893.6:ENST00000492129.5:ENST00000419071.6:ENST00000536323.5:ENST00000412418.5:ENST00000268835.7:ENST00000395656.6:ENST00000455992.6:ENST00000542013.5:ENST00000574451.5:ENST00000460724.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	32	2	4.50056	4.5541350000000005	4.60771	0.015974	0.00567576	0.101453	0.0678837
chr21	33914783	33914877	7445042	0	-	0.393617	(0.378,0.408]	chr21	759742	4	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ENSG00000249209:ATP5PO	ENSG00000249209.2:ENSG00000241837.7	ENST00000429238.2:ENST00000290299.7:ENST00000491703.5:ENST00000431254.5:ENST00000652380.1:ENST00000495005.5:ENST00000496044.5:ENST00000484627.5:ENST00000487374.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	32	2	4.50056	4.5541350000000005	4.60771	0.015974	0.00567576	0.101453	0.0678837
chr22	19817614	19817713	7555252	0	-	0.40404	(0.378,0.408]	chr22	772431	48	INTRON	INTRON	GNB1L	ENSG00000185838.14	ENST00000329517.11:ENST00000403325.5:ENST00000405009.5:ENST00000460402.5:ENST00000481086.1:ENST00000453108.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	32	2	4.50056	4.5541350000000005	4.60771	0.015974	0.00567576	0.101453	0.0678837
chr22	41944549	41944636	7592223	0	-	0.402299	(0.378,0.408]	chr22	777603	5	INTRON	INTRON	CENPM	ENSG00000100162.15	ENST00000215980.10:ENST00000402338.5:ENST00000404067.5:ENST00000407253.7:ENST00000402420.1	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.50056	4.5541350000000005	4.60771	0.015974	0.00567576	0.101453	0.0678837
chr6	34905686	34905786	2849436	0	+	0.38	(0.378,0.408]	chr6	269222	157	INTRON	INTRON	ANKS1A	ENSG00000064999.15	ENST00000360359.5:ENST00000649117.1:ENST00000650178.1	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.50056	4.5541350000000005	4.60771	0.015974	0.00567576	0.101453	0.0678837
chr9	33845163	33845263	4110505	0	+	0.39	(0.378,0.408]	chr9	374686	142	INTRON	INTRON	UBE2R2	ENSG00000107341.5	ENST00000263228.4	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.50056	4.5541350000000005	4.60771	0.015974	0.00567576	0.101453	0.0678837
chrX	44991487	44991587	7649788	0	+	0.38	(0.378,0.408]	chrX	782744	144	INTRON	INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000675440.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000621147.5:ENST00000475233.1:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	32	2	4.50056	4.5541350000000005	4.60771	0.015974	0.00567576	0.101453	0.0678837
chrX	119542930	119543012	7872701	0	-	0.402439	(0.378,0.408]	chrX	801735	3	SS3_PROX	SS3_PROX:INTRON	STEEP1	ENSG00000018610.15	ENST00000644802.2:ENST00000320339.8:ENST00000536133.2	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.50056	4.5541350000000005	4.60771	0.015974	0.00567576	0.101453	0.0678837
chr16	89376026	89376126	6542445	0	-	0.4	(0.378,0.408]	chr16	634240	25	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000647238.1:ENST00000644045.1:ENST00000643147.1:ENST00000644139.1:ENST00000568512.6:ENST00000566973.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	107	2	2.84624	4.553945000000001	6.26165	4.63696e-4	1.93011e-5	0.0195302	0.00356593
chr2	229902344	229902443	1341467	0	-	0.424242	(0.408,0.44]	chr2	140462	11	INTRON	INTRON	TRIP12	ENSG00000153827.14	ENST00000675453.1:ENST00000675903.1:ENST00000283943.9:ENST00000675423.1:ENST00000389044.8:ENST00000389045.7:ENST00000479037.5:ENST00000409677.5:ENST00000435716.5:ENST00000428959.5:ENST00000430954.5:ENST00000343290.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	68	2	3.97074	4.5538799999999995	5.13702	0.00202889	8.66152e-5	0.04086	0.00783027
chr2	226926819	226926919	1024582	0	+	0.3	(0.28,0.32]	chr2	109473	121	INTRON	INTRON	RHBDD1	ENSG00000144468.17	ENST00000341329.7:ENST00000392062.7:ENST00000409053.1:ENST00000491490.5:ENST00000493526.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	35	2	4.14214	4.55334	4.96454	0.0579756	0.00344078	0.167723	0.0539802
chr7	156881472	156881572	3687901	0	-	0.29	(0.28,0.32]	chr7	342096	442	INTRON	INTRON	LMBR1	ENSG00000105983.23	ENST00000353442.10:ENST00000415428.5:ENST00000454132.5:ENST00000434503.5:ENST00000430278.5:ENST00000434278.5:ENST00000444719.5:ENST00000461469.5:ENST00000414218.1:ENST00000434453.1:ENST00000498034.5:ENST00000433968.5:ENST00000485985.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	35	2	4.14214	4.55334	4.96454	0.0579756	0.00344078	0.167723	0.0539802
chr18	76846932	76847031	6932693	0	+	0.525253	(0.515,0.57]	chr18	685619	222	INTRON	INTRON	ZNF236	ENSG00000130856.17	ENST00000320610.14:ENST00000543926.6:ENST00000253159.12	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	30	2	4.51	4.5531500000000005	4.5963	0.00809449	0.00370287	0.0766625	0.0561162
chr19	49088466	49088560	7088402	0	+	0.521277	(0.515,0.57]	chr19	709534	3	INTRON	INTRON	SNRNP70	ENSG00000104852.15	ENST00000601065.5:ENST00000598984.5:ENST00000598441.6:ENST00000401730.5:ENST00000221448.9:ENST00000597936.5:ENST00000595231.5:ENST00000601411.1:ENST00000599687.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	30	2	4.51	4.5531500000000005	4.5963	0.00809449	0.00370287	0.0766625	0.0561162
chr4	40107524	40107623	1954375	0	+	0.525253	(0.515,0.57]	chr4	195715	1	INTRON	INTRON	N4BP2	ENSG00000078177.14	ENST00000261435.11:ENST00000511480.5:ENST00000513269.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	30	2	4.51	4.5531500000000005	4.5963	0.00809449	0.00370287	0.0766625	0.0561162
chr5	134810026	134810125	2490912	0	+	0.373737	(0.35,0.378]	chr5	237976	17	INTRON	INTRON	DDX46	ENSG00000145833.16	ENST00000452510.7:ENST00000507392.5:ENST00000354283.8:ENST00000503946.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	92	2	3.2393	4.55314	5.86698	2.86552e-4	1.76496e-4	0.0150568	0.01216
chr9	131184272	131184372	4216232	0	+	0.52	(0.515,0.57]	chr9	386630	55	INTRON	INTRON	NUP214	ENSG00000126883.19	ENST00000695497.1:ENST00000695498.1:ENST00000695496.1:ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000525980.5:ENST00000526346.5:ENST00000531929.5:ENST00000651334.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	60	2	3.62821	4.553100000000001	5.47799	4.12866e-4	2.09356e-4	0.0181365	0.0131276
chr7	6590775	6590875	3273465	0	+	0.33	(0.32,0.35]	chr7	304396	3	SS5_PROX	SS5_PROX:INTRON	C7orf26	ENSG00000146576.13	ENST00000344417.10:ENST00000359073.9	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.17181	4.55303	4.93425	0.04531	0.00281048	0.149888	0.0488779
chr2	43976706	43976802	1110426	0	-	0.229167	[0,0.28]	chr2	119105	6	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	LRPPRC	ENSG00000138095.20	ENST00000260665.12:ENST00000682308.1:ENST00000683459.1:ENST00000683623.1:ENST00000683125.1:ENST00000683994.1:ENST00000684619.1:ENST00000683833.1:ENST00000682546.1:ENST00000682585.1:ENST00000683220.1:ENST00000683796.1:ENST00000683590.1:ENST00000684306.1:ENST00000683213.1:ENST00000682779.1:ENST00000682885.1:ENST00000683346.1:ENST00000683072.1:ENST00000682303.1:ENST00000683329.1:ENST00000684383.1:ENST00000682480.1:ENST00000684290.1:ENST00000684341.1:ENST00000682595.1:ENST00000683802.1:ENST00000681961.1:ENST00000683989.1:ENST00000447246.2:ENST00000409659.6:ENST00000682104.1:ENST00000683934.1:ENST00000681959.1:ENST00000684482.1:ENST00000683082.1:ENST00000409946.6:ENST00000684329.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	110	2	3.18349	4.55275	5.92201	8.17983e-4	6.16875e-4	0.0264086	0.0223951
chr10	5779541	5779641	4544576	0	-	0.31	(0.28,0.32]	chr10	419772	52	INTRON	INTRON	GDI2	ENSG00000057608.17	ENST00000380191.9:ENST00000447751.5:ENST00000380181.7:ENST00000456041.5	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.23719	4.55225	4.86731	0.0264147	0.0116253	0.133676	0.0889104
chr10	50433656	50433756	4618783	0	-	0.29	(0.28,0.32]	chr10	425431	1	SS3_PROX	SS3_PROX:INTRON	SGMS1	ENSG00000198964.14	ENST00000429490.5:ENST00000361781.7:ENST00000619438.4:ENST00000609445.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	35	2	4.23719	4.55225	4.86731	0.0264147	0.0116253	0.133676	0.0889104
chr11	94871489	94871588	4852138	0	+	0.30303	(0.28,0.32]	chr11	452610	8	UTR3	UTR3:EXON_MRNA	AMOTL1	ENSG00000166025.18	ENST00000317829.12:ENST00000433060.3	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.23719	4.55225	4.86731	0.0264147	0.0116253	0.133676	0.0889104
chr11	119133607	119133704	4874842	0	+	0.309278	(0.28,0.32]	chr11	455655	5	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HINFP	ENSG00000172273.13	ENST00000350777.7:ENST00000527410.3:ENST00000527755.5:ENST00000529808.1:ENST00000532860.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	35	2	4.23719	4.55225	4.86731	0.0264147	0.0116253	0.133676	0.0889104
chr12	101778873	101778970	5398451	0	-	0.319588	(0.28,0.32]	chr12	514945	7	UTR3	UTR3:EXON_MRNA:INTRON	GNPTAB	ENSG00000111670.16	ENST00000299314.12:ENST00000549940.5:ENST00000552681.1	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.23719	4.55225	4.86731	0.0264147	0.0116253	0.133676	0.0889104
chr13	41003229	41003329	5577370	0	-	0.31	(0.28,0.32]	chr13	533202	100	INTRON	INTRON	ELF1	ENSG00000120690.16	ENST00000239882.7:ENST00000405737.2	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.23719	4.55225	4.86731	0.0264147	0.0116253	0.133676	0.0889104
chr2	241688562	241688658	1055866	0	+	0.3125	(0.28,0.32]	chr2	112551	1	INTRON	INTRON	ING5	ENSG00000168395.16	ENST00000636051.1	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.23719	4.55225	4.86731	0.0264147	0.0116253	0.133676	0.0889104
chr21	34965452	34965552	7448043	0	-	0.31	(0.28,0.32]	chr21	759873	721	INTRON	INTRON	RUNX1	ENSG00000159216.19	ENST00000300305.7:ENST00000675419.1:ENST00000437180.5:ENST00000482318.5:ENST00000455571.5:ENST00000475045.6:ENST00000416754.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	35	2	4.23719	4.55225	4.86731	0.0264147	0.0116253	0.133676	0.0889104
chr12	123189893	123189992	5443618	0	-	0.343434	(0.32,0.35]	chr12	520806	83	INTRON	INTRON	MPHOSPH9	ENSG00000051825.15	ENST00000606320.6:ENST00000541076.6:ENST00000545556.6:ENST00000302373.8:ENST00000539024.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	34	2	4.27113	4.552	4.83287	0.0199982	0.0095071	0.120668	0.0817766
chr14	32116939	32117039	5681685	0	+	0.35	(0.32,0.35]	chr14	541047	4	SS3_PROX	SS3_PROX:INTRON	ARHGAP5	ENSG00000100852.14	ENST00000556611.5:ENST00000539826.6:ENST00000396582.6:ENST00000345122.8:ENST00000433497.5:ENST00000554090.1:ENST00000557643.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	34	2	4.27113	4.552	4.83287	0.0199982	0.0095071	0.120668	0.0817766
chr2	147994657	147994756	1242516	0	-	0.333333	(0.32,0.35]	chr2	131884	122	INTRON	INTRON	ORC4	ENSG00000115947.14	ENST00000392857.10:ENST00000264169.6:ENST00000536575.5:ENST00000535373.5:ENST00000540442.5:ENST00000461711.5:ENST00000490200.5:ENST00000416719.5:ENST00000457954.5:ENST00000440042.1:ENST00000495601.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	34	2	4.27113	4.552	4.83287	0.0199982	0.0095071	0.120668	0.0817766
chr9	93473275	93473374	4158262	0	+	0.494949	(0.476,0.515]	chr9	379133	15	INTRON	INTRON	FAM120A	ENSG00000048828.17	ENST00000277165.11:ENST00000375389.7:ENST00000446420.2	protein_coding	protein_coding	protein_coding	protein_coding	1	66	2	3.40003	4.55192	5.70381	0.00139193	1.75496e-4	0.0341261	0.01216
chr20	31761176	31761276	7253882	0	+	0.43	(0.408,0.44]	chr20	736745	6	INTRON	INTRON	TPX2	ENSG00000088325.16	ENST00000340513.4:ENST00000300403.11	protein_coding	protein_coding	protein_coding	protein_coding	4	122	2	3.01592	4.551785	6.08765	5.77417e-5	3.51008e-5	0.00620725	0.00499276
chr10	72787666	72787766	4451053	0	+	0.38	(0.378,0.408]	chr10	410768	266	INTRON	INTRON	MCU	ENSG00000156026.15	ENST00000373053.8:ENST00000357157.10:ENST00000604679.5:ENST00000604372.5:ENST00000603649.5:ENST00000605597.5:ENST00000536019.5:ENST00000604152.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	32	2	4.41169	4.551690000000001	4.69169	0.0199606	0.00432302	0.109608	0.0599409
chr10	77825948	77826046	4653768	0	-	0.397959	(0.378,0.408]	chr10	428694	11	INTRON	INTRON	DLG5	ENSG00000151208.17	ENST00000372391.7:ENST00000475613.6:ENST00000424842.5:ENST00000468332.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	32	2	4.41169	4.551690000000001	4.69169	0.0199606	0.00432302	0.109608	0.0599409
chr11	117233471	117233569	4869439	0	+	0.397959	(0.378,0.408]	chr11	454484	3	INTRON	INTRON	RNF214	ENSG00000167257.11	ENST00000534428.5:ENST00000300650.9:ENST00000529869.1:ENST00000531452.5:ENST00000531287.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	32	2	4.41169	4.551690000000001	4.69169	0.0199606	0.00432302	0.109608	0.0599409
chr15	84688964	84689062	6251753	0	-	0.408163	(0.378,0.408]	chr15	596672	8	INTRON	INTRON	SEC11A	ENSG00000140612.14	ENST00000559729.5:ENST00000268220.12:ENST00000560266.5:ENST00000558134.5:ENST00000558217.5:ENST00000455959.7:ENST00000560409.5:ENST00000558196.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	32	2	4.41169	4.551690000000001	4.69169	0.0199606	0.00432302	0.109608	0.0599409
chr17	38805211	38805309	6764860	0	-	0.387755	(0.378,0.408]	chr17	665334	20	INTRON	INTRON	CWC25	ENSG00000273559.5	ENST00000614790.5:ENST00000619299.4:ENST00000618122.4:ENST00000619462.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	32	2	4.41169	4.551690000000001	4.69169	0.0199606	0.00432302	0.109608	0.0599409
chr17	57356221	57356321	6633751	0	+	0.39	(0.378,0.408]	chr17	648024	455	INTRON	INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000581776.5:ENST00000674961.1:ENST00000582453.5:ENST00000675656.1:ENST00000322684.7:ENST00000579590.5:ENST00000676073.1:ENST00000675822.1:ENST00000442934.6:ENST00000579180.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	32	2	4.41169	4.551690000000001	4.69169	0.0199606	0.00432302	0.109608	0.0599409
chr3	185749905	185750005	1885597	0	-	0.4	(0.378,0.408]	chr3	188573	512	INTRON	INTRON	IGF2BP2	ENSG00000073792.16	ENST00000382199.7:ENST00000346192.7:ENST00000457616.6:ENST00000421047.3:ENST00000461957.5:ENST00000493302.5:ENST00000466476.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	32	2	4.41169	4.551690000000001	4.69169	0.0199606	0.00432302	0.109608	0.0599409
chr4	107990863	107990963	2017817	0	+	0.53	(0.515,0.57]	chr4	200622	4	INTRON	INTRON	HADH	ENSG00000138796.18	ENST00000603302.5:ENST00000505878.4:ENST00000639335.1:ENST00000639146.1:ENST00000640752.2:ENST00000507260.3:ENST00000640201.2:ENST00000682197.1:ENST00000638621.1:ENST00000511742.1:ENST00000639013.1:ENST00000684696.1:ENST00000309522.8:ENST00000403312.6:ENST00000681992.1:ENST00000640060.1:ENST00000638559.1:ENST00000682373.1:ENST00000640586.1:ENST00000639698.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	62	2	3.25412	4.551565	5.84901	0.00224554	3.33916e-5	0.0435144	0.00487221
chr22	19890248	19890347	7555791	0	-	0.383838	(0.378,0.408]	chr22	772493	59	INTRON	INTRON	TXNRD2	ENSG00000184470.21	ENST00000400518.5:ENST00000542719.6:ENST00000494454.5:ENST00000474308.5:ENST00000400525.6:ENST00000400521.7:ENST00000400519.6:ENST00000634537.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:non_stop_decay:nonsense_mediated_decay	0	32	2	4.51854	4.551405	4.58427	0.0128325	0.00748824	0.0926667	0.0772645
chr11	59589021	59589121	4954331	0	-	0.27	[0,0.28]	chr11	465198	71	INTRON	INTRON	OSBP	ENSG00000110048.12	ENST00000263847.6:ENST00000525357.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	35	2	4.46726	4.551245	4.63523	0.0427997	0.0139836	0.148082	0.10247
chr2	36874505	36874605	1093673	0	-	0.28	[0,0.28]	chr2	117167	44	INTRON	INTRON	STRN	ENSG00000115808.12	ENST00000263918.9:ENST00000379213.3:ENST00000495595.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	35	2	4.46726	4.551245	4.63523	0.0427997	0.0139836	0.148082	0.10247
chr22	20553474	20553574	7479824	0	+	0.28	[0,0.28]	chr22	762996	3	SS5_PROX	SS5_PROX:INTRON	MED15	ENSG00000099917.17	ENST00000445987.5:ENST00000444094.5:ENST00000414658.5:ENST00000433831.5:ENST00000432052.5:ENST00000292733.11:ENST00000263205.11:ENST00000477824.5:ENST00000406969.5:ENST00000382974.6:ENST00000441501.5:ENST00000445189.5:ENST00000451058.5:ENST00000473028.5:ENST00000457322.5:ENST00000428629.5:ENST00000424287.5:ENST00000423862.5:ENST00000420849.5:ENST00000487550.5:ENST00000476767.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	35	2	4.46726	4.551245	4.63523	0.0427997	0.0139836	0.148082	0.10247
chr5	134384603	134384703	2488709	0	+	0.24	[0,0.28]	chr5	237597	34	INTRON	INTRON	UBE2B	ENSG00000119048.9	ENST00000507277.2:ENST00000510021.5:ENST00000511807.1:ENST00000265339.7:ENST00000506787.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	35	2	4.46726	4.551245	4.63523	0.0427997	0.0139836	0.148082	0.10247
chr6	140165783	140165883	2968113	0	+	0.23	[0,0.28]	chr6	279015	167	INTRON	INTRON	ENSG00000288714	ENSG00000288714.1	ENST00000683950.1	lncRNA	lncRNA	lncRNA	lncRNA	0	35	2	4.46726	4.551245	4.63523	0.0427997	0.0139836	0.148082	0.10247
chr10	35444189	35444289	4425583	0	+	0.45	(0.44,0.476]	chr10	407912	96	INTRON	INTRON	CCNY	ENSG00000108100.18	ENST00000374706.5:ENST00000490012.6:ENST00000493157.6:ENST00000374704.8:ENST00000265375.13:ENST00000339497.7:ENST00000492478.5:ENST00000470025.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	106	2	3.16066	4.551145	5.94163	7.80786e-5	6.45088e-5	0.00736696	0.00711194
chr1	112949880	112949980	524081	0	-	0.28	[0,0.28]	chr1	61694	140	INTRON	INTRON	SLC16A1	ENSG00000155380.13	ENST00000679803.1:ENST00000369626.8:ENST00000538576.5:ENST00000429288.2:ENST00000458229.6:ENST00000679846.1:ENST00000478835.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	35	2	4.5461	4.55114	4.55618	0.0365918	0.0171034	0.138959	0.110899
chr10	848852	848952	4541749	0	-	0.28	[0,0.28]	chr10	419263	34	INTRON	INTRON	LARP4B	ENSG00000107929.16	ENST00000688365.1:ENST00000316157.8:ENST00000690516.1:ENST00000689323.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	35	2	4.5461	4.55114	4.55618	0.0365918	0.0171034	0.138959	0.110899
chr4	75666699	75666798	2162045	0	-	0.272727	[0,0.28]	chr4	213024	35	INTRON	INTRON	G3BP2	ENSG00000138757.15	ENST00000676666.1:ENST00000678062.1:ENST00000678100.1:ENST00000678122.1:ENST00000677265.1:ENST00000678971.1:ENST00000679281.1:ENST00000677333.1:ENST00000676470.1:ENST00000677620.1:ENST00000677606.1:ENST00000678798.1:ENST00000677583.1:ENST00000678447.1:ENST00000678875.1:ENST00000678244.1:ENST00000676974.1:ENST00000677003.1:ENST00000677889.1:ENST00000678329.1:ENST00000676584.1:ENST00000678552.1:ENST00000677192.1:ENST00000677727.1:ENST00000678265.1:ENST00000676839.1:ENST00000677876.1:ENST00000678123.1:ENST00000678578.1:ENST00000677171.1:ENST00000395719.7:ENST00000359707.9:ENST00000677060.1:ENST00000679294.1:ENST00000677201.1:ENST00000677952.1:ENST00000677125.1:ENST00000678273.1:ENST00000357854.7:ENST00000677162.1:ENST00000677566.1:ENST00000677970.1:ENST00000503660.5:ENST00000678670.1:ENST00000502654.5:ENST00000507745.5:ENST00000513927.1:ENST00000511146.5:ENST00000507252.5:ENST00000507701.1:ENST00000499709.3:ENST00000511868.6:ENST00000508510.6:ENST00000676702.1:ENST00000677145.1:ENST00000509561.6:ENST00000677489.1:ENST00000678389.1:ENST00000676485.1:ENST00000678908.1:ENST00000678843.1:ENST00000676641.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	35	2	4.5461	4.55114	4.55618	0.0365918	0.0171034	0.138959	0.110899
chr6	163564113	163564205	3033210	0	+	0.25	[0,0.28]	chr6	282604	5	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	QKI	ENSG00000112531.17	ENST00000361758.8:ENST00000453779.6:ENST00000275262.11:ENST00000392127.6:ENST00000361752.8:ENST00000361195.6:ENST00000424802.7:ENST00000545607.5:ENST00000537883.5:ENST00000540719.1:ENST00000544361.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	35	2	4.5461	4.55114	4.55618	0.0365918	0.0171034	0.138959	0.110899
chr7	5410386	5410485	3471949	0	-	0.262626	[0,0.28]	chr7	324678	31	INTRON	INTRON	TNRC18	ENSG00000182095.15	ENST00000399537.8:ENST00000430969.6:ENST00000399434.2	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.5461	4.55114	4.55618	0.0365918	0.0171034	0.138959	0.110899
chr7	107322039	107322139	3610600	0	-	0.38	(0.378,0.408]	chr7	336666	233	INTRON	INTRON	COG5	ENSG00000164597.15	ENST00000297135.9:ENST00000347053.8:ENST00000393603.7	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	3.98867	4.55091	5.11315	0.0507	9.26795e-4	0.156383	0.0278442
chr1	39000571	39000671	74492	0	+	0.53	(0.515,0.57]	chr1	9635	2	SS3_PROX	SS3_PROX:INTRON	AKIRIN1	ENSG00000174574.16	ENST00000432648.8:ENST00000372984.8:ENST00000446189.6:ENST00000531822.1	protein_coding	protein_coding	protein_coding	protein_coding	0	30	2	4.41498	4.55033	4.68568	0.0106866	0.00270027	0.0861859	0.0479115
chr12	70262373	70262473	5166621	0	+	0.54	(0.515,0.57]	chr12	489374	177	INTRON	INTRON	CNOT2	ENSG00000111596.14	ENST00000547780.5:ENST00000418359.7:ENST00000552319.5:ENST00000550160.5:ENST00000551661.5:ENST00000551132.5:ENST00000553078.5:ENST00000548021.5:ENST00000550641.6:ENST00000229195.8:ENST00000552915.5:ENST00000549443.5:ENST00000548741.5:ENST00000552483.5:ENST00000552422.5:ENST00000551179.1:ENST00000547321.5:ENST00000553020.5:ENST00000548159.5:ENST00000549750.5:ENST00000551043.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	30	2	4.41498	4.55033	4.68568	0.0106866	0.00270027	0.0861859	0.0479115
chr6	31651155	31651255	3079014	0	-	0.37	(0.35,0.378]	chr6	286871	1	SS5_PROX	SS5_PROX:INTRON	BAG6	ENSG00000204463.14	ENST00000211379.9:ENST00000679119.1:ENST00000375964.11:ENST00000676571.1:ENST00000676615.2:ENST00000375976.8:ENST00000362049.10:ENST00000439687.6:ENST00000437771.5:ENST00000435080.5:ENST00000456622.5:ENST00000452994.5:ENST00000434444.5:ENST00000428326.5:ENST00000451898.5:ENST00000433828.5:ENST00000424480.5:ENST00000424176.5:ENST00000441054.5:ENST00000456286.5:ENST00000454165.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	111	2	3.07741	4.550255	6.0231	1.44425e-4	8.75017e-5	0.010445	0.00840733
chr15	81854245	81854345	6243846	0	-	0.54	(0.515,0.57]	chr15	595867	355	INTRON	INTRON	ENSG00000259692	ENSG00000259692.6	ENST00000559428.2:ENST00000560054.6:ENST00000560097.1:ENST00000559299.2	lncRNA	lncRNA	lncRNA	lncRNA	0	30	2	4.50102	4.5500799999999995	4.59914	0.00616166	0.00510768	0.0676501	0.0646039
chr17	2640564	2640661	6547911	0	+	0.525773	(0.515,0.57]	chr17	635237	14	EXON_MRNA	EXON_MRNA:INTRON	PAFAH1B1:ENSG00000279432	ENSG00000007168.14:ENSG00000279432.1	ENST00000576586.5:ENST00000397195.10:ENST00000676201.1:ENST00000575477.5:ENST00000675621.1:ENST00000676353.1:ENST00000674717.1:ENST00000675202.1:ENST00000675764.1:ENST00000674608.1:ENST00000676077.1:ENST00000676098.1:ENST00000572915.6:ENST00000570400.1:ENST00000675430.1:ENST00000675331.1:ENST00000676188.1:ENST00000574816.5:ENST00000675390.1:ENST00000676456.1:ENST00000622996.1	protein_coding	protein_coding	protein_coding:TEC	protein_coding:retained_intron:nonsense_mediated_decay:TEC:processed_transcript	0	30	2	4.50102	4.5500799999999995	4.59914	0.00616166	0.00510768	0.0676501	0.0646039
chr18	9203682	9203779	6869605	0	+	0.525773	(0.515,0.57]	chr18	680581	27	INTRON	INTRON	ANKRD12	ENSG00000101745.17	ENST00000262126.9:ENST00000540578.6:ENST00000581635.5:ENST00000400020.7:ENST00000581758.1:ENST00000546007.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	30	2	4.50102	4.5500799999999995	4.59914	0.00616166	0.00510768	0.0676501	0.0646039
chr2	8728163	8728262	1060890	0	-	0.535354	(0.515,0.57]	chr2	113118	5	INTRON	INTRON	KIDINS220	ENSG00000134313.17	ENST00000569008.2:ENST00000689369.1:ENST00000693394.1:ENST00000689852.1:ENST00000693597.1:ENST00000693432.1:ENST00000496383.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	30	2	4.50102	4.5500799999999995	4.59914	0.00616166	0.00510768	0.0676501	0.0646039
chr6	108310678	108310778	2931949	0	+	0.53	(0.515,0.57]	chr6	276227	144	INTRON	INTRON	AFG1L	ENSG00000135537.17	ENST00000430458.1:ENST00000368977.9:ENST00000421954.5:ENST00000437715.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	30	2	4.50102	4.5500799999999995	4.59914	0.00616166	0.00510768	0.0676501	0.0646039
chr17	44442185	44442284	6780219	0	-	0.363636	(0.35,0.378]	chr17	668667	31	INTRON	INTRON	GPATCH8	ENSG00000186566.13	ENST00000591680.6:ENST00000335500.8:ENST00000587228.5:ENST00000585614.1:ENST00000590041.5:ENST00000586265.5:ENST00000592746.5:ENST00000586037.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	110	2	2.85764	4.54998	6.24232	4.6759e-4	3.07545e-5	0.0195867	0.00461029
chr7	77539542	77539640	3342034	0	+	0.27551	[0,0.28]	chr7	311308	3	INTRON	INTRON	PTPN12	ENSG00000127947.16	ENST00000248594.11:ENST00000460731.5:ENST00000523952.5:ENST00000433369.6:ENST00000415482.6:ENST00000435495.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	81	2	3.54621	4.549885	5.55356	0.00278704	0.00124865	0.0469265	0.0328543
chr1	29003894	29003993	59855	0	+	0.474747	(0.44,0.476]	chr1	7649	62	INTRON	INTRON	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000647918.1:ENST00000646800.1:ENST00000644342.1:ENST00000646189.1:ENST00000482464.6:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000646260.1:ENST00000373798.5:ENST00000644600.1:ENST00000649674.1:ENST00000643173.1:ENST00000343067.9:ENST00000644780.1:ENST00000650265.1:ENST00000648181.1:ENST00000643604.1:ENST00000648891.1:ENST00000373797.2:ENST00000349460.9:ENST00000645184.1:ENST00000645111.1:ENST00000643302.1:ENST00000645999.1:ENST00000642643.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	70	2	3.50954	4.549715	5.58989	0.00116647	9.76499e-5	0.0312127	0.00830626
chr11	47819073	47819173	4951866	0	-	0.52	(0.515,0.57]	chr11	464593	3	SS5_PROX	SS5_PROX:INTRON	NUP160	ENSG00000030066.14	ENST00000694866.1:ENST00000378460.7:ENST00000530326.5:ENST00000528071.5:ENST00000528501.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	96	2	2.7614899999999998	4.54958	6.33767	6.09302e-4	2.02551e-6	0.0223951	9.75792e-4
chr4	145158423	145158520	2255271	0	-	0.391753	(0.378,0.408]	chr4	220223	21	INTRON	INTRON	OTUD4	ENSG00000164164.17	ENST00000455611.6:ENST00000454497.6:ENST00000447906.8:ENST00000514973.5:ENST00000505976.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	73	2	3.10274	4.5495350000000006	5.99633	0.00586642	1.32573e-5	0.0668095	0.00270432
chr2	60895338	60895436	785756	0	+	0.510204	(0.476,0.515]	chr2	88393	4	INTRON	INTRON	REL	ENSG00000162924.15	ENST00000295025.12:ENST00000394479.4:ENST00000642725.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	32	2	4.24501	4.5494	4.85379	0.0247713	0.00234214	0.12011	0.0442989
chr7	66406296	66406394	3538551	0	-	0.479592	(0.476,0.515]	chr7	330104	34	INTRON	INTRON	LINC00174	ENSG00000179406.9	ENST00000638517.1:ENST00000640964.1	lncRNA	lncRNA	lncRNA	lncRNA	0	32	2	4.24501	4.5494	4.85379	0.0247713	0.00234214	0.12011	0.0442989
chr8	52627043	52627140	3950207	0	-	0.494845	(0.476,0.515]	chr8	362272	19	INTRON	INTRON	RB1CC1	ENSG00000023287.13	ENST00000025008.10:ENST00000435644.6:ENST00000521611.1:ENST00000519912.1:ENST00000522957.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	32	2	4.24501	4.5494	4.85379	0.0247713	0.00234214	0.12011	0.0442989
chr1	247077393	247077493	683299	0	-	0.4	(0.378,0.408]	chr1	80116	375	INTRON	INTRON	ZNF670-ZNF695:ZNF670	ENSG00000135747.11:ENSG00000277462.2	ENST00000465049.6:ENST00000474541.1:ENST00000366503.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	34	2	4.09379	4.54919	5.00459	0.023912	0.00371142	0.129075	0.0535094
chr7	43641804	43641894	3525490	0	-	0.4	(0.378,0.408]	chr7	328734	5	EXON_LNCRNA	EXON_LNCRNA:INTRON	COA1	ENSG00000106603.20	ENST00000415076.6:ENST00000446330.6:ENST00000446564.5:ENST00000438444.5:ENST00000490251.1:ENST00000223336.11:ENST00000310564.10:ENST00000395879.5:ENST00000488813.1:ENST00000415798.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	34	2	4.09379	4.54919	5.00459	0.023912	0.00371142	0.129075	0.0535094
chr1	31272298	31272397	413044	0	-	0.282828	(0.28,0.32]	chr1	49792	4	INTRON	INTRON	SNRNP40	ENSG00000060688.13	ENST00000263694.9:ENST00000489853.1:ENST00000474025.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	34	2	4.33765	4.54898	4.76031	0.039714	0.00656106	0.143072	0.0735539
chr1	50713584	50713684	449784	0	-	0.29	(0.28,0.32]	chr1	54237	73	INTRON	INTRON	FAF1	ENSG00000185104.21	ENST00000396153.7:ENST00000487898.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	34	2	4.33765	4.54898	4.76031	0.039714	0.00656106	0.143072	0.0735539
chr1	90973119	90973213	502037	0	-	0.308511	(0.28,0.32]	chr1	59494	5	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	ZNF644	ENSG00000122482.22	ENST00000370440.5:ENST00000337393.10:ENST00000347275.9:ENST00000361321.5:ENST00000467231.5:ENST00000498303.5:ENST00000474405.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	34	2	4.33765	4.54898	4.76031	0.039714	0.00656106	0.143072	0.0735539
chr11	66759893	66759992	4811498	0	+	0.30303	(0.28,0.32]	chr11	447950	4	INTRON	INTRON	C11orf80	ENSG00000173715.18	ENST00000524551.5:ENST00000525908.6:ENST00000540737.7:ENST00000527634.5:ENST00000527368.5:ENST00000531400.6:ENST00000642265.1:ENST00000532565.6:ENST00000525449.6:ENST00000360962.10:ENST00000532727.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	34	2	4.33765	4.54898	4.76031	0.039714	0.00656106	0.143072	0.0735539
chr22	20836338	20836437	7559458	0	-	0.30303	(0.28,0.32]	chr22	773209	13	INTRON	INTRON	PI4KA	ENSG00000241973.11	ENST00000255882.11:ENST00000485963.5:ENST00000449120.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	34	2	4.33765	4.54898	4.76031	0.039714	0.00656106	0.143072	0.0735539
chr5	97195894	97195994	2436932	0	+	0.32	(0.28,0.32]	chr5	234107	116	INTRON	INTRON	LIX1-AS1:ENSG00000286828	ENSG00000251513.2:ENSG00000286828.1	ENST00000504578.2:ENST00000654632.1	lncRNA	lncRNA	lncRNA	lncRNA	0	34	2	4.33765	4.54898	4.76031	0.039714	0.00656106	0.143072	0.0735539
chr6	119074544	119074644	3203328	0	-	0.31	(0.28,0.32]	chr6	298249	494	INTRON	INTRON	FAM184A	ENSG00000111879.20	ENST00000338891.12:ENST00000621231.4:ENST00000352896.9:ENST00000475529.7:ENST00000368475.8:ENST00000521531.5:ENST00000522284.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	34	2	4.33765	4.54898	4.76031	0.039714	0.00656106	0.143072	0.0735539
chr9	86021634	86021717	4149759	0	+	0.301205	(0.28,0.32]	chr9	378524	3	SS3_PROX	SS3_PROX:INTRON	NAA35	ENSG00000135040.16	ENST00000361671.10	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.33765	4.54898	4.76031	0.039714	0.00656106	0.143072	0.0735539
chr6	158561031	158561131	3021608	0	+	0.68	(0.57,1]	chr6	281792	4	INTRON	INTRON	TMEM181	ENSG00000146433.10	ENST00000367090.4:ENST00000684151.1	protein_coding	protein_coding	protein_coding	protein_coding	3	106	2	4.31721	4.54877	4.78033	9.29568e-8	5.92332e-8	1.32696e-4	1.00155e-4
chr19	13129980	13130079	7022765	0	+	0.484848	(0.476,0.515]	chr19	698366	112	INTRON	INTRON	NACC1	ENSG00000160877.6	ENST00000586171.2:ENST00000292431.5	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.32915	4.54871	4.76827	0.0124637	0.00600704	0.0973643	0.0674604
chr2	127844146	127844245	1225893	0	-	0.494949	(0.476,0.515]	chr2	130525	7	UTR3	UTR3:EXON_MRNA	POLR2D	ENSG00000144231.11	ENST00000272645.9	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.32915	4.54871	4.76827	0.0124637	0.00600704	0.0973643	0.0674604
chr21	33906650	33906725	7444951	0	-	0.48	(0.476,0.515]	chr21	759716	3	EXON_MRNA	EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ENSG00000249209:ATP5PO	ENSG00000249209.2:ENSG00000241837.7	ENST00000429238.2:ENST00000290299.7:ENST00000491703.5:ENST00000431254.5:ENST00000652380.1:ENST00000418933.1:ENST00000417181.5:ENST00000429064.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	32	2	4.32915	4.54871	4.76827	0.0124637	0.00600704	0.0973643	0.0674604
chr4	77751974	77752074	2166356	0	-	0.49	(0.476,0.515]	chr4	213691	32	INTRON	INTRON	CNOT6L	ENSG00000138767.14	ENST00000504123.7:ENST00000649644.1:ENST00000515506.6:ENST00000512485.6:ENST00000504804.7:ENST00000506166.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	32	2	4.32915	4.54871	4.76827	0.0124637	0.00600704	0.0973643	0.0674604
chr5	40737224	40737323	2610576	0	-	0.494949	(0.476,0.515]	chr5	248203	65	INTRON	INTRON	TTC33	ENSG00000113638.14	ENST00000636863.1:ENST00000637375.1:ENST00000636106.1:ENST00000337702.5:ENST00000503936.6:ENST00000504251.6:ENST00000511730.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	32	2	4.32915	4.54871	4.76827	0.0124637	0.00600704	0.0973643	0.0674604
chr6	31624747	31624824	2843134	0	+	0.480519	(0.476,0.515]	chr6	267593	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PRRC2A	ENSG00000204469.13	ENST00000376033.3:ENST00000376007.8:ENST00000469577.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	32	2	4.32915	4.54871	4.76827	0.0124637	0.00600704	0.0973643	0.0674604
chr6	169648370	169648451	3266561	0	-	0.493827	(0.476,0.515]	chr6	303155	1	INTRON	INTRON	WDR27	ENSG00000184465.16	ENST00000448612.6:ENST00000479310.5:ENST00000648472.1:ENST00000423258.5:ENST00000647790.1:ENST00000546525.5:ENST00000441385.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	32	2	4.32915	4.54871	4.76827	0.0124637	0.00600704	0.0973643	0.0674604
chr1	212871315	212871410	309972	0	+	0.294737	(0.28,0.32]	chr1	35798	13	INTRON	INTRON	FLVCR1	ENSG00000162769.13	ENST00000366971.9:ENST00000419102.1:ENST00000474693.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	34	2	4.4334	4.548495	4.66359	0.0193496	0.0163355	0.109464	0.108861
chr1	246029158	246029258	675922	0	-	0.32	(0.28,0.32]	chr1	79713	407	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000391836.3:ENST00000464398.1:ENST00000453676.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	34	2	4.4334	4.548495	4.66359	0.0193496	0.0163355	0.109464	0.108861
chr15	68126857	68126957	6056682	0	+	0.3	(0.28,0.32]	chr15	576567	386	INTRON	INTRON	PIAS1	ENSG00000033800.14	ENST00000564915.5:ENST00000249636.11:ENST00000562190.1:ENST00000545237.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	34	2	4.4334	4.548495	4.66359	0.0193496	0.0163355	0.109464	0.108861
chr19	29995605	29995705	7048097	0	+	0.29	(0.28,0.32]	chr19	702695	88	INTRON	INTRON	URI1	ENSG00000105176.18	ENST00000360605.8:ENST00000574233.5:ENST00000392271.6:ENST00000574110.5:ENST00000574666.5:ENST00000576442.1:ENST00000570704.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	34	2	4.4334	4.548495	4.66359	0.0193496	0.0163355	0.109464	0.108861
chr2	97521230	97521329	1183535	0	-	0.313131	(0.28,0.32]	chr2	126902	49	INTRON	INTRON	ANKRD36B	ENSG00000196912.13	ENST00000359901.9:ENST00000258459.12	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.4334	4.548495	4.66359	0.0193496	0.0163355	0.109464	0.108861
chr2	233295295	233295390	1039820	0	+	0.294737	(0.28,0.32]	chr2	110972	11	UTR3	UTR3:EXON_MRNA	ATG16L1	ENSG00000085978.22	ENST00000347464.9:ENST00000373525.9:ENST00000392021.7:ENST00000392017.9:ENST00000479942.5:ENST00000474148.5:ENST00000392020.8:ENST00000392018.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	34	2	4.4334	4.548495	4.66359	0.0193496	0.0163355	0.109464	0.108861
chr3	48530639	48530739	1688644	0	-	0.32	(0.28,0.32]	chr3	172531	46	INTRON	INTRON	PFKFB4	ENSG00000114268.12	ENST00000232375.8:ENST00000490115.5:ENST00000383734.6:ENST00000416568.5:ENST00000417753.5:ENST00000445633.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	34	2	4.4334	4.548495	4.66359	0.0193496	0.0163355	0.109464	0.108861
chr1	16316832	16316932	382263	0	-	0.34	(0.32,0.35]	chr1	44888	10	INTRON	INTRON	FBXO42	ENSG00000037637.11	ENST00000375592.8	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.45629	4.548375	4.64046	0.0246089	0.00724767	0.12011	0.0756327
chr1	227030107	227030207	648800	0	-	0.33	(0.32,0.35]	chr1	76931	3	SS5_PROX	SS5_PROX:INTRON	CDC42BPA	ENSG00000143776.20	ENST00000366766.8:ENST00000366769.7:ENST00000334218.9:ENST00000366767.7:ENST00000448940.5:ENST00000442054.5:ENST00000366764.8:ENST00000429440.5:ENST00000441725.1	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.45629	4.548375	4.64046	0.0246089	0.00724767	0.12011	0.0756327
chr17	30135024	30135124	6587572	0	+	0.33	(0.32,0.35]	chr17	640563	69	INTRON	INTRON	NSRP1	ENSG00000126653.18	ENST00000540900.7:ENST00000612959.4:ENST00000247026.10:ENST00000577289.6:ENST00000584154.5:ENST00000394826.8:ENST00000475652.5:ENST00000584317.5:ENST00000583301.5:ENST00000585881.5:ENST00000467446.6:ENST00000580103.6:ENST00000581048.5:ENST00000588614.1:ENST00000589608.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	33	2	4.45629	4.548375	4.64046	0.0246089	0.00724767	0.12011	0.0756327
chr2	3439097	3439197	686341	0	+	0.35	(0.32,0.35]	chr2	80494	141	INTRON	INTRON	TRAPPC12	ENSG00000171853.16	ENST00000382110.6:ENST00000324266.10:ENST00000457845.4:ENST00000441983.5:ENST00000417243.5:ENST00000469147.5:ENST00000441099.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	33	2	4.45629	4.548375	4.64046	0.0246089	0.00724767	0.12011	0.0756327
chr2	30494932	30495031	727298	0	+	0.323232	(0.32,0.35]	chr2	83984	53	INTRON	INTRON	LCLAT1	ENSG00000172954.14	ENST00000466477.5:ENST00000465200.5:ENST00000319406.8:ENST00000379509.8:ENST00000491680.6:ENST00000488144.5:ENST00000465538.5:ENST00000309052.8:ENST00000478015.5:ENST00000476038.5:ENST00000497423.1:ENST00000476535.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	33	2	4.45629	4.548375	4.64046	0.0246089	0.00724767	0.12011	0.0756327
chr20	3937156	3937255	7308617	0	-	0.333333	(0.32,0.35]	chr20	744273	17	INTRON	INTRON	RNF24	ENSG00000101236.17	ENST00000336095.10:ENST00000358395.11:ENST00000432261.6:ENST00000545616.2	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.45629	4.548375	4.64046	0.0246089	0.00724767	0.12011	0.0756327
chr3	197236358	197236458	1902887	0	-	0.34	(0.32,0.35]	chr3	190659	101	INTRON	INTRON	DLG1	ENSG00000075711.21	ENST00000667157.1:ENST00000346964.6:ENST00000663148.1:ENST00000655488.1:ENST00000357674.9:ENST00000671185.1:ENST00000658701.1:ENST00000667104.1:ENST00000661336.1:ENST00000669565.1:ENST00000670455.1:ENST00000656087.1:ENST00000670366.1:ENST00000661453.1:ENST00000665728.1:ENST00000664564.1:ENST00000660432.1:ENST00000660898.1:ENST00000657381.1:ENST00000659221.1:ENST00000654737.1:ENST00000669332.1:ENST00000659716.1:ENST00000664991.1:ENST00000419354.5:ENST00000661440.1:ENST00000667971.1:ENST00000670935.1:ENST00000666007.1:ENST00000661229.1:ENST00000661013.1:ENST00000436682.6:ENST00000662727.1:ENST00000422288.6:ENST00000448528.6:ENST00000656944.1:ENST00000392382.6:ENST00000450955.5:ENST00000658155.1:ENST00000669714.1:ENST00000654733.1:ENST00000419227.5:ENST00000392381.7:ENST00000471733.5:ENST00000419553.6:ENST00000661808.1:ENST00000453607.5:ENST00000456699.6:ENST00000392380.6:ENST00000485409.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	33	2	4.45629	4.548375	4.64046	0.0246089	0.00724767	0.12011	0.0756327
chr4	1914979	1915078	1911015	0	+	0.333333	(0.32,0.35]	chr4	191754	24	INTRON	INTRON	NSD2	ENSG00000109685.19	ENST00000508803.6:ENST00000508355.5:ENST00000514045.5:ENST00000398261.6:ENST00000382891.9:ENST00000353275.9:ENST00000382892.6:ENST00000382895.7:ENST00000312087.10:ENST00000420906.6:ENST00000503128.5:ENST00000509115.5:ENST00000677559.1:ENST00000512700.2:ENST00000678714.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	33	2	4.45629	4.548375	4.64046	0.0246089	0.00724767	0.12011	0.0756327
chr4	23093470	23093568	1929062	0	+	0.336735	(0.32,0.35]	chr4	193967	12	INTRON	INTRON	ENSG00000248837	ENSG00000248837.7	ENST00000659942.1:ENST00000655325.1:ENST00000652324.1:ENST00000653008.1:ENST00000666412.1:ENST00000667179.1:ENST00000661585.1:ENST00000653872.1:ENST00000667156.1:ENST00000658109.1:ENST00000653188.1:ENST00000666579.1:ENST00000663348.1	lncRNA	lncRNA	lncRNA	lncRNA	0	33	2	4.45629	4.548375	4.64046	0.0246089	0.00724767	0.12011	0.0756327
chr5	176963854	176963954	2776499	0	-	0.33	(0.32,0.35]	chr5	261550	53	INTRON	INTRON	UIMC1	ENSG00000087206.17	ENST00000377227.8:ENST00000511320.6:ENST00000506128.5:ENST00000512031.5:ENST00000510698.2:ENST00000503273.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	33	2	4.45629	4.548375	4.64046	0.0246089	0.00724767	0.12011	0.0756327
chr6	44398233	44398333	2873027	0	+	0.34	(0.32,0.35]	chr6	272655	14	INTRON	INTRON	CDC5L	ENSG00000096401.8	ENST00000371477.4	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.45629	4.548375	4.64046	0.0246089	0.00724767	0.12011	0.0756327
chrX	153340991	153341091	7737566	0	+	0.34	(0.32,0.35]	chrX	791778	39	INTRON	INTRON	ZNF275	ENSG00000063587.15	ENST00000370249.3:ENST00000650114.2:ENST00000370251.3	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.45629	4.548375	4.64046	0.0246089	0.00724767	0.12011	0.0756327
chr1	86969243	86969342	154140	0	+	0.343434	(0.32,0.35]	chr1	16962	104	INTRON	INTRON	HS2ST1	ENSG00000153936.18	ENST00000370550.10:ENST00000370551.8:ENST00000687893.1:ENST00000693745.1:ENST00000689904.1:ENST00000690674.1:ENST00000591456.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	33	2	4.53988	4.548245	4.55661	0.0202178	0.00927858	0.109913	0.0855292
chr2	169539277	169539368	1261344	0	-	0.32967	(0.32,0.35]	chr2	133625	8	INTRON	INTRON	FASTKD1	ENSG00000138399.18	ENST00000453153.7:ENST00000453929.6:ENST00000490590.5:ENST00000495505.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	33	2	4.53988	4.548245	4.55661	0.0202178	0.00927858	0.109913	0.0855292
chr2	216170241	216170341	1014968	0	+	0.34	(0.32,0.35]	chr2	108025	78	INTRON	INTRON	XRCC5	ENSG00000079246.16	ENST00000392133.7:ENST00000392132.7:ENST00000460284.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	33	2	4.53988	4.548245	4.55661	0.0202178	0.00927858	0.109913	0.0855292
chr7	111401507	111401607	3622501	0	-	0.35	(0.32,0.35]	chr7	337108	87	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000452895.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.53988	4.548245	4.55661	0.0202178	0.00927858	0.109913	0.0855292
chr7	158659305	158659405	3688319	0	-	0.33	(0.32,0.35]	chr7	342172	5	INTRON	INTRON	NCAPG2	ENSG00000146918.20	ENST00000356309.8:ENST00000432615.5:ENST00000409423.5:ENST00000441982.5:ENST00000467785.5:ENST00000409339.3:ENST00000474940.5:ENST00000475918.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	33	2	4.53988	4.548245	4.55661	0.0202178	0.00927858	0.109913	0.0855292
chr8	662599	662699	3883837	0	-	0.35	(0.32,0.35]	chr8	357329	215	INTRON	INTRON	ERICH1	ENSG00000104714.14	ENST00000522706.5:ENST00000523415.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	33	2	4.53988	4.548245	4.55661	0.0202178	0.00927858	0.109913	0.0855292
chrX	18298805	18298904	7770492	0	-	0.343434	(0.32,0.35]	chrX	794176	101	INTRON	INTRON	SCML2	ENSG00000102098.19	ENST00000251900.9	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.53988	4.548245	4.55661	0.0202178	0.00927858	0.109913	0.0855292
chr6	157823946	157824044	3015768	0	+	0.591837	(0.57,1]	chr6	281347	1	INTRON	INTRON	SNX9	ENSG00000130340.17	ENST00000614703.4:ENST00000614800.4:ENST00000680863.1:ENST00000679814.1:ENST00000680464.1:ENST00000681186.1:ENST00000679732.1:ENST00000681183.1:ENST00000681534.1:ENST00000681651.1:ENST00000680089.1:ENST00000680078.1:ENST00000680974.1:ENST00000680095.1:ENST00000680015.1:ENST00000681138.1:ENST00000392185.8:ENST00000679790.1:ENST00000680495.1:ENST00000679691.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	124	2	4.06664	4.54819	5.02974	2.63465e-8	1.3318e-8	6.22008e-5	3.50673e-5
chr11	34133730	34133818	4768490	0	+	0.465909	(0.44,0.476]	chr11	441139	2	INTRON	INTRON	NAT10	ENSG00000135372.10	ENST00000531159.6:ENST00000257829.8:ENST00000527971.5	protein_coding	protein_coding	protein_coding	protein_coding	1	66	2	3.36231	4.54807	5.73383	0.00161678	1.70474e-4	0.0369204	0.0119761
chr1	100097483	100097583	515499	0	-	0.47	(0.44,0.476]	chr1	60434	89	INTRON	INTRON	SASS6	ENSG00000156876.10	ENST00000462159.1:ENST00000287482.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	32	2	4.23755	4.54786	4.85817	0.0263357	0.00223254	0.122221	0.0435144
chr1	149924114	149924214	549615	0	-	0.46	(0.44,0.476]	chr1	64544	1	SS3_PROX	SS3_PROX:INTRON	SF3B4	ENSG00000143368.10	ENST00000271628.9	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.23755	4.54786	4.85817	0.0263357	0.00223254	0.122221	0.0435144
chr2	70029597	70029697	1150666	0	-	0.46	(0.44,0.476]	chr2	122850	11	INTRON	INTRON	PCBP1-AS1	ENSG00000179818.16	ENST00000419542.5:ENST00000682294.1:ENST00000684630.1:ENST00000630975.3:ENST00000435880.6:ENST00000629339.3:ENST00000667874.1:ENST00000628659.2:ENST00000628308.2:ENST00000626515.2:ENST00000625447.2:ENST00000628305.2:ENST00000625625.2:ENST00000625864.2:ENST00000630522.2:ENST00000628837.2:ENST00000627325.2:ENST00000629084.2:ENST00000629603.2:ENST00000625215.2:ENST00000627189.2:ENST00000629836.2:ENST00000626898.2:ENST00000628883.2:ENST00000629533.2:ENST00000627181.2:ENST00000630214.2:ENST00000627918.2:ENST00000628374.2:ENST00000627327.2:ENST00000626495.2:ENST00000629605.2:ENST00000626370.2:ENST00000626842.2:ENST00000630457.2:ENST00000629184.2:ENST00000628551.2:ENST00000630746.2:ENST00000627398.2:ENST00000457076.5:ENST00000625783.2:ENST00000625490.2:ENST00000627050.2:ENST00000630759.2:ENST00000628667.2:ENST00000626632.2:ENST00000631110.2:ENST00000626609.2:ENST00000629506.2:ENST00000630985.2:ENST00000413436.5:ENST00000628147.2:ENST00000631107.2:ENST00000629415.2:ENST00000418564.5:ENST00000630280.2:ENST00000415222.5:ENST00000628322.2:ENST00000626440.2:ENST00000628455.2:ENST00000665708.1:ENST00000655086.1:ENST00000420309.6:ENST00000627487.3:ENST00000670036.1:ENST00000655096.1:ENST00000685127.1:ENST00000684907.1:ENST00000685079.1:ENST00000687866.1:ENST00000692564.1:ENST00000686517.1:ENST00000689138.1:ENST00000688056.1:ENST00000594376.6:ENST00000692333.1:ENST00000688045.1:ENST00000657291.1:ENST00000691987.1:ENST00000664483.1:ENST00000601431.6:ENST00000685803.1:ENST00000690200.1:ENST00000686800.1:ENST00000684857.1:ENST00000627037.2:ENST00000629212.2:ENST00000688473.1:ENST00000456161.5:ENST00000627074.2:ENST00000419963.5:ENST00000625227.2:ENST00000599673.5:ENST00000629407.2:ENST00000612430.3:ENST00000418308.5:ENST00000630283.2:ENST00000629178.2:ENST00000627542.2:ENST00000626574.2:ENST00000596028.5:ENST00000629485.2:ENST00000630685.2:ENST00000452431.5:ENST00000629374.2:ENST00000423402.5:ENST00000411429.5:ENST00000629188.2:ENST00000434781.5:ENST00000626162.2:ENST00000654878.1:ENST00000659586.1:ENST00000457770.6:ENST00000415742.5:ENST00000627540.2:ENST00000628263.2	lncRNA	lncRNA	lncRNA	lncRNA	0	32	2	4.23755	4.54786	4.85817	0.0263357	0.00223254	0.122221	0.0435144
chr4	893589	893681	2093893	0	-	0.456522	(0.44,0.476]	chr4	206938	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GAK	ENSG00000178950.18	ENST00000314167.9:ENST00000511163.5:ENST00000504435.1:ENST00000505819.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	32	2	4.23755	4.54786	4.85817	0.0263357	0.00223254	0.122221	0.0435144
chr7	44393482	44393582	3527312	0	-	0.47	(0.44,0.476]	chr7	328949	6	INTRON	INTRON	NUDCD3	ENSG00000015676.18	ENST00000355451.8:ENST00000460110.5:ENST00000487118.1:ENST00000338427.10:ENST00000493613.5:ENST00000472246.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	32	2	4.23755	4.54786	4.85817	0.0263357	0.00223254	0.122221	0.0435144
chr8	105352489	105352588	3837580	0	+	0.353535	(0.35,0.378]	chr8	354033	324	INTRON	INTRON	ZFPM2	ENSG00000169946.14	ENST00000518180.1:ENST00000407775.7:ENST00000520492.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	69	2	3.73609	4.547185	5.35828	0.00135282	3.31057e-4	0.0336321	0.0161599
chr10	48472171	48472270	4610819	0	-	0.444444	(0.44,0.476]	chr10	424823	56	INTRON	INTRON	ARHGAP22	ENSG00000128805.15	ENST00000249601.9:ENST00000374172.5:ENST00000374170.5:ENST00000417247.6:ENST00000435790.6:ENST00000417912.6:ENST00000460425.1:ENST00000515523.5:ENST00000471013.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	32	2	4.33346	4.54707	4.76068	0.0120349	0.00653414	0.0962115	0.0699952
chr2	240563162	240563261	1052867	0	+	0.464646	(0.44,0.476]	chr2	112017	18	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DUSP28	ENSG00000188542.10	ENST00000343217.6:ENST00000405954.2:ENST00000438823.1:ENST00000479788.5:ENST00000497221.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	32	2	4.33346	4.54707	4.76068	0.0120349	0.00653414	0.0962115	0.0699952
chr7	100871277	100871359	3365784	0	+	0.548781	(0.515,0.57]	chr7	315004	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TRIP6	ENSG00000087077.14	ENST00000200457.9:ENST00000476870.5:ENST00000619988.4:ENST00000429658.1:ENST00000488670.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	124	2	4.43438	4.547045	4.65971	6.56174e-6	8.15659e-7	0.00193947	5.09591e-4
chr1	51507103	51507202	454236	0	-	0.20202	[0,0.28]	chr1	54447	254	INTRON	INTRON	EPS15	ENSG00000085832.17	ENST00000371733.8:ENST00000371730.6:ENST00000371727.5:ENST00000471391.1:ENST00000465467.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	35	2	4.38387	4.54702	4.71017	0.0501911	0.0114708	0.156383	0.0956037
chr12	116125009	116125109	5424019	0	-	0.25	[0,0.28]	chr12	518263	131	INTRON	INTRON	MED13L	ENSG00000123066.9	ENST00000281928.9:ENST00000650226.1:ENST00000548743.2:ENST00000647567.1:ENST00000551197.2	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.38387	4.54702	4.71017	0.0501911	0.0114708	0.156383	0.0956037
chr12	120891489	120891588	5435779	0	-	0.232323	[0,0.28]	chr12	519663	560	INTRON	INTRON	SPPL3	ENSG00000157837.16	ENST00000353487.7:ENST00000536996.5:ENST00000543608.5:ENST00000543854.5	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.38387	4.54702	4.71017	0.0501911	0.0114708	0.156383	0.0956037
chr17	5482808	5482882	6714932	0	-	0.27027	[0,0.28]	chr17	658363	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	DERL2	ENSG00000072849.11	ENST00000158771.9:ENST00000572834.5:ENST00000570848.5:ENST00000575605.5:ENST00000571476.5:ENST00000576551.5:ENST00000571971.1:ENST00000574952.5:ENST00000573637.5:ENST00000574700.5:ENST00000575209.5:ENST00000571968.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	35	2	4.38387	4.54702	4.71017	0.0501911	0.0114708	0.156383	0.0956037
chr20	41060793	41060893	7273826	0	+	0.25	[0,0.28]	chr20	739216	310	INTRON	INTRON	TOP1	ENSG00000198900.7	ENST00000361337.3:ENST00000681113.1:ENST00000681058.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	35	2	4.38387	4.54702	4.71017	0.0501911	0.0114708	0.156383	0.0956037
chr5	39000153	39000252	2604902	0	-	0.272727	[0,0.28]	chr5	247878	29	INTRON	INTRON	RICTOR	ENSG00000164327.13	ENST00000357387.8:ENST00000511516.5:ENST00000296782.9:ENST00000510711.5:ENST00000513566.1:ENST00000514735.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	35	2	4.38387	4.54702	4.71017	0.0501911	0.0114708	0.156383	0.0956037
chr5	150030045	150030142	2518963	0	+	0.226804	[0,0.28]	chr5	240804	26	INTRON	INTRON	HMGXB3	ENSG00000113716.13	ENST00000613459.4:ENST00000503427.5:ENST00000502717.6:ENST00000514469.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	35	2	4.38387	4.54702	4.71017	0.0501911	0.0114708	0.156383	0.0956037
chr6	136283187	136283285	3231061	0	-	0.22449	[0,0.28]	chr6	300408	1	INTRON	INTRON	BCLAF1	ENSG00000029363.17	ENST00000640069.1:ENST00000531224.6:ENST00000353331.8:ENST00000527536.5:ENST00000527613.5:ENST00000530767.5:ENST00000527759.5:ENST00000534269.5:ENST00000532384.5:ENST00000530429.5:ENST00000628517.2:ENST00000529826.5:ENST00000528229.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	35	2	4.38387	4.54702	4.71017	0.0501911	0.0114708	0.156383	0.0956037
chrX	135156706	135156790	7893810	0	-	0.297619	(0.28,0.32]	chrX	803607	3	UTR3	UTR3:EXON_MRNA	CT55	ENSG00000169551.13	ENST00000276241.11:ENST00000344129.2	protein_coding	protein_coding	protein_coding	protein_coding	1	75	2	3.35108	4.54671	5.7423400000000004	0.00221345	7.31742e-4	0.0435144	0.0248722
chr1	45908588	45908688	94864	0	+	0.21	[0,0.28]	chr1	12702	258	INTRON	INTRON	MAST2	ENSG00000086015.23	ENST00000470809.1:ENST00000361297.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	35	2	4.47254	4.54669	4.62084	0.0313633	0.020991	0.13151	0.122348
chr10	50329217	50329317	4617730	0	-	0.22	[0,0.28]	chr10	425400	15	INTRON	INTRON	SGMS1	ENSG00000198964.14	ENST00000429490.5:ENST00000361781.7:ENST00000602619.1:ENST00000361543.3:ENST00000626236.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	35	2	4.47254	4.54669	4.62084	0.0313633	0.020991	0.13151	0.122348
chr11	96297588	96297688	5023912	0	-	0.25	[0,0.28]	chr11	473809	2037	INTRON	INTRON	MAML2	ENSG00000184384.14	ENST00000524717.6	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.47254	4.54669	4.62084	0.0313633	0.020991	0.13151	0.122348
chr16	11008601	11008700	6288197	0	+	0.272727	[0,0.28]	chr16	602178	49	INTRON	INTRON	CLEC16A	ENSG00000038532.16	ENST00000409790.6:ENST00000409552.4:ENST00000494853.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	35	2	4.47254	4.54669	4.62084	0.0313633	0.020991	0.13151	0.122348
chr2	25792491	25792589	1084673	0	-	0.214286	[0,0.28]	chr2	115925	52	INTRON	INTRON	ASXL2	ENSG00000143970.18	ENST00000435504.9:ENST00000336112.9:ENST00000673455.1:ENST00000497092.1	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.47254	4.54669	4.62084	0.0313633	0.020991	0.13151	0.122348
chr17	66531543	66531643	6664588	0	+	0.48	(0.476,0.515]	chr17	650332	349	INTRON	INTRON	PRKCA	ENSG00000154229.12	ENST00000413366.8:ENST00000578063.5:ENST00000284384.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	66	2	3.78212	4.54635	5.31058	9.15544e-4	2.36145e-4	0.0278396	0.0136195
chr18	9229166	9229265	6869865	0	+	0.383838	(0.378,0.408]	chr18	680611	68	INTRON	INTRON	ANKRD12	ENSG00000101745.17	ENST00000262126.9:ENST00000540578.6:ENST00000400020.7:ENST00000546007.6:ENST00000359158.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	33	2	4.10661	4.54624	4.98587	0.0399023	0.00152268	0.143072	0.0360297
chr3	185802163	185802263	1886120	0	-	0.38	(0.378,0.408]	chr3	188573	1035	INTRON	INTRON	IGF2BP2	ENSG00000073792.16	ENST00000382199.7:ENST00000346192.7:ENST00000457616.6:ENST00000421047.3:ENST00000461957.5:ENST00000493302.5:ENST00000466476.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	33	2	4.10661	4.54624	4.98587	0.0399023	0.00152268	0.143072	0.0360297
chr7	152344455	152344555	3680377	0	-	0.38	(0.378,0.408]	chr7	341653	2	SS3_PROX	SS3_PROX:INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000682301.1:ENST00000452749.2:ENST00000680867.1:ENST00000683800.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	33	2	4.10661	4.54624	4.98587	0.0399023	0.00152268	0.143072	0.0360297
chr7	105274160	105274260	3602754	0	-	0.36	(0.35,0.378]	chr7	336144	49	INTRON	INTRON	SRPK2	ENSG00000135250.17	ENST00000393651.8:ENST00000489828.5:ENST00000482897.5:ENST00000460391.5:ENST00000462282.5:ENST00000465112.5:ENST00000482862.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	33	2	4.1971	4.546165	4.89523	0.0367539	0.00253947	0.138959	0.0465056
chrX	124030560	124030660	7717447	0	+	0.37	(0.35,0.378]	chrX	789501	2	SS3_PROX	SS3_PROX:INTRON	STAG2	ENSG00000101972.20	ENST00000394477.5:ENST00000218089.13:ENST00000455404.5:ENST00000483575.5:ENST00000687810.1:ENST00000687071.1:ENST00000469481.1:ENST00000371160.5:ENST00000435103.5:ENST00000687852.1:ENST00000371145.8:ENST00000692982.1:ENST00000371157.7:ENST00000691035.1:ENST00000686802.1:ENST00000691383.1:ENST00000686127.1:ENST00000371144.7:ENST00000458176.5:ENST00000466748.5:ENST00000471107.1:ENST00000428941.5:ENST00000435215.5:ENST00000394478.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	33	2	4.1971	4.546165	4.89523	0.0367539	0.00253947	0.138959	0.0465056
chr2	241678051	241678151	1349347	0	-	0.5	(0.476,0.515]	chr2	141787	2	SS5_PROX	SS5_PROX:INTRON	DTYMK	ENSG00000168393.13	ENST00000400770.6:ENST00000305784.7:ENST00000445261.5:ENST00000432348.5:ENST00000420144.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	87	2	3.11021	4.545745	5.98128	5.02606e-4	4.70386e-5	0.020217099999999998	0.00593131
chr6	89804452	89804552	3161886	0	-	0.39	(0.378,0.408]	chr6	294886	5	INTRON	INTRON	MDN1	ENSG00000112159.12	ENST00000369393.8:ENST00000629399.2:ENST00000439638.1	protein_coding	protein_coding	protein_coding	protein_coding	1	67	2	3.3797	4.545405	5.71111	0.00154501	2.59738e-4	0.0362716	0.0148796
chr11	118497558	118497652	4872761	0	+	0.446809	(0.44,0.476]	chr11	455091	9	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	KMT2A	ENSG00000118058.24	ENST00000389506.10:ENST00000534358.8:ENST00000691053.1:ENST00000649699.1:ENST00000528278.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	119	2	2.78097	4.545345	6.30972	2.31078e-4	9.73578e-6	0.0134209	0.00240387
chr15	20472244	20472343	6118601	0	-	0.373737	(0.35,0.378]	chr15	582467	55	INTRON	INTRON	HERC2P3	ENSG00000180229.12	ENST00000428453.5:ENST00000437318.5:ENST00000430598.5:ENST00000429257.5:ENST00000414804.5:ENST00000412154.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	33	2	4.29961	4.5452	4.79079	0.0158483	0.00846427	0.109464	0.0776969
chr3	60180133	60180233	1711415	0	-	0.38	(0.378,0.408]	chr3	176138	994	INTRON	INTRON	FHIT	ENSG00000189283.10	ENST00000492590.6:ENST00000476844.5:ENST00000468189.5:ENST00000488467.5	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.21226	4.54494	4.87762	0.0177403	0.00553849	0.11319	0.0648867
chr4	139375467	139375566	2050450	0	+	0.383838	(0.378,0.408]	chr4	203376	47	INTRON	INTRON	NAA15	ENSG00000164134.13	ENST00000296543.10:ENST00000398947.1	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.21226	4.54494	4.87762	0.0177403	0.00553849	0.11319	0.0648867
chr15	87387310	87387410	6253420	0	-	0.34	(0.32,0.35]	chr15	596790	601	INTRON	INTRON	ENSG00000259560	ENSG00000259560.2	ENST00000665121.1:ENST00000656130.1	lncRNA	lncRNA	lncRNA	lncRNA	2	97	2	2.82385	4.54486	6.26587	0.00217392	4.61806e-5	0.043502	0.00588447
chr17	44719995	44720094	6615970	0	+	0.424242	(0.408,0.44]	chr17	645215	103	INTRON	INTRON	DBF4B	ENSG00000161692.18	ENST00000393547.6:ENST00000528353.5:ENST00000528766.5:ENST00000315005.8:ENST00000526924.5:ENST00000526915.5:ENST00000525140.5:ENST00000531699.5:ENST00000532789.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	32	2	4.23096	4.54484	4.85872	0.0278028	0.00221911	0.123904	0.0435144
chr6	33698384	33698475	3083263	0	-	0.362637	(0.35,0.378]	chr6	288523	8	EXON_MRNA	EXON_MRNA:INTRON	UQCC2	ENSG00000137288.10	ENST00000606961.1:ENST00000374231.8:ENST00000607484.6:ENST00000374214.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	76	2	3.67306	4.544605	5.41615	7.05001e-4	3.21724e-4	0.024224	0.0159645
chr14	101789480	101789580	5818773	0	+	0.28	[0,0.28]	chr14	551826	4	SS3_PROX	SS3_PROX:INTRON	PPP2R5C	ENSG00000078304.20	ENST00000694906.1:ENST00000422945.6:ENST00000554442.5:ENST00000556068.5:ENST00000328724.9:ENST00000554504.1:ENST00000553890.1:ENST00000553554.1:ENST00000556086.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	156	2	2.94758	4.54429	6.141	3.6661e-4	1.99822e-4	0.0177832	0.0123381
chr20	63210576	63210676	7362725	0	-	0.51	(0.476,0.515]	chr20	751230	64	INTRON	INTRON	YTHDF1	ENSG00000149658.18	ENST00000370339.8:ENST00000370334.4	protein_coding	protein_coding	protein_coding	protein_coding	1	69	2	3.37632	4.5442350000000005	5.71215	0.00195267	5.54639e-5	0.0400465	0.00609037
chr1	153891196	153891296	557448	0	-	0.4	(0.378,0.408]	chr1	65989	43	INTRON	INTRON	GATAD2B	ENSG00000143614.10	ENST00000368655.5:ENST00000634544.1:ENST00000634408.1:ENST00000634401.1:ENST00000634791.1:ENST00000636014.1:ENST00000637331.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	32	2	4.31699	4.54402	4.77105	0.0250408	0.00330823	0.12011	0.0527031
chr10	87050588	87050685	4659373	0	-	0.391753	(0.378,0.408]	chr10	429307	5	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	GLUD1	ENSG00000148672.10	ENST00000277865.5:ENST00000684699.1:ENST00000682396.1:ENST00000683022.1:ENST00000683269.1:ENST00000683256.1:ENST00000681987.1:ENST00000683647.1:ENST00000683813.1:ENST00000474574.2:ENST00000684032.1:ENST00000684338.1:ENST00000487058.2:ENST00000684201.1:ENST00000684690.1:ENST00000682507.1:ENST00000683649.1:ENST00000683783.1:ENST00000681988.1:ENST00000684665.1:ENST00000684434.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	32	2	4.31699	4.54402	4.77105	0.0250408	0.00330823	0.12011	0.0527031
chr19	16562171	16562270	7149822	0	-	0.40404	(0.378,0.408]	chr19	722367	52	INTRON	INTRON	SLC35E1	ENSG00000127526.15	ENST00000595753.6:ENST00000409648.8:ENST00000436553.6:ENST00000600356.1:ENST00000470077.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	32	2	4.31699	4.54402	4.77105	0.0250408	0.00330823	0.12011	0.0527031
chr19	52272591	52272689	7094710	0	+	0.408163	(0.378,0.408]	chr19	711251	26	INTRON	INTRON	ZNF766	ENSG00000196214.11	ENST00000439461.6:ENST00000593703.1:ENST00000599581.5:ENST00000601711.5	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.31699	4.54402	4.77105	0.0250408	0.00330823	0.12011	0.0527031
chr21	15022746	15022845	7431839	0	-	0.40404	(0.378,0.408]	chr21	757984	79	INTRON	INTRON	NRIP1	ENSG00000180530.11	ENST00000400202.5:ENST00000318948.7:ENST00000400199.5:ENST00000638122.1:ENST00000637963.1:ENST00000637630.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	32	2	4.31699	4.54402	4.77105	0.0250408	0.00330823	0.12011	0.0527031
chr21	29071275	29071363	7437034	0	-	0.397727	(0.378,0.408]	chr21	758551	6	INTRON	INTRON	CCT8	ENSG00000156261.13	ENST00000540844.5:ENST00000470450.5:ENST00000286788.9:ENST00000626972.2:ENST00000431234.1:ENST00000484403.5:ENST00000481059.5:ENST00000494296.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	32	2	4.31699	4.54402	4.77105	0.0250408	0.00330823	0.12011	0.0527031
chr5	134690741	134690838	2489841	0	+	0.381443	(0.378,0.408]	chr5	237776	21	INTRON	INTRON	SEC24A	ENSG00000113615.13	ENST00000398844.7:ENST00000322887.8:ENST00000513123.1	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.31699	4.54402	4.77105	0.0250408	0.00330823	0.12011	0.0527031
chr8	144742182	144742282	4086803	0	-	0.38	(0.378,0.408]	chr8	372200	184	INTRON	INTRON	ZNF251	ENSG00000198169.9	ENST00000524394.2:ENST00000292562.12	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	32	2	4.31699	4.54402	4.77105	0.0250408	0.00330823	0.12011	0.0527031
chr12	11667640	11667740	5076780	0	+	0.43	(0.408,0.44]	chr12	480040	171	INTRON	INTRON	ETV6	ENSG00000139083.11	ENST00000396373.9:ENST00000541426.1:ENST00000544715.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	32	2	4.334	4.54399	4.75398	0.011982	0.00703931	0.0962115	0.0718189
chr9	249741	249841	4088416	0	+	0.42	(0.408,0.44]	chr9	372400	285	INTRON	INTRON	DOCK8	ENSG00000107099.18	ENST00000469197.5:ENST00000432829.7:ENST00000524396.5:ENST00000682121.1:ENST00000454469.6:ENST00000684384.1:ENST00000684166.1:ENST00000382329.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	32	2	4.334	4.54399	4.75398	0.011982	0.00703931	0.0962115	0.0718189
chr21	33459619	33459717	7440771	0	-	0.418367	(0.408,0.44]	chr21	759343	32	INTRON	INTRON	TMEM50B	ENSG00000142188.17	ENST00000420455.5:ENST00000542230.7:ENST00000441128.5:ENST00000442441.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	106	2	3.18515	4.543655	5.90216	8.66425e-5	6.73915e-5	0.00836204	0.00679256
chr1	180740478	180740578	270681	0	+	0.34	(0.32,0.35]	chr1	31620	577	INTRON	INTRON	XPR1	ENSG00000143324.14	ENST00000367590.9:ENST00000367589.3	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.36755	4.543625	4.7197	0.0300552	0.00568521	0.129138	0.0678837
chr12	116011255	116011350	5422874	0	-	0.326316	(0.32,0.35]	chr12	518217	4	INTRON	INTRON	MED13L	ENSG00000123066.9	ENST00000281928.9:ENST00000650226.1:ENST00000648737.1:ENST00000549786.2:ENST00000548743.2:ENST00000647567.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	33	2	4.36755	4.543625	4.7197	0.0300552	0.00568521	0.129138	0.0678837
chr1	224146664	224146764	321438	0	+	0.4	(0.378,0.408]	chr1	37008	121	INTRON	INTRON	FBXO28	ENSG00000143756.12	ENST00000366862.10:ENST00000424254.6:ENST00000523990.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	32	2	4.42349	4.5434350000000006	4.66338	0.0103469	0.00992961	0.0877296	0.0850389
chr11	66437849	66437943	4968397	0	-	0.404255	(0.378,0.408]	chr11	468570	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MRPL11	ENSG00000174547.13	ENST00000310999.11:ENST00000430466.6:ENST00000524576.5:ENST00000329819.4:ENST00000534488.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	32	2	4.42349	4.5434350000000006	4.66338	0.0103469	0.00992961	0.0877296	0.0850389
chr13	95210097	95210191	5638958	0	-	0.393617	(0.378,0.408]	chr13	537145	1	INTRON	INTRON	ABCC4	ENSG00000125257.16	ENST00000645237.2:ENST00000643051.1:ENST00000643842.1:ENST00000646439.1:ENST00000643816.1:ENST00000536256.3:ENST00000643556.1:ENST00000629385.1:ENST00000642524.1:ENST00000645532.1:ENST00000644471.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	32	2	4.42349	4.5434350000000006	4.66338	0.0103469	0.00992961	0.0877296	0.0850389
chr15	82598737	82598837	6248013	0	-	0.38	(0.378,0.408]	chr15	596252	149	INTRON	INTRON	CPEB1	ENSG00000214575.10	ENST00000684509.1:ENST00000614918.4:ENST00000611031.4:ENST00000617958.4:ENST00000615198.4:ENST00000620182.4:ENST00000617522.4:ENST00000569257.5:ENST00000567678.1	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.42349	4.5434350000000006	4.66338	0.0103469	0.00992961	0.0877296	0.0850389
chr7	67307478	67307578	3329134	0	+	0.39	(0.378,0.408]	chr7	309488	10	INTRON	INTRON	STAG3L4	ENSG00000106610.16	ENST00000416602.6:ENST00000689067.1:ENST00000691248.1:ENST00000689978.1:ENST00000687534.1:ENST00000647855.1:ENST00000472361.5:ENST00000689458.1:ENST00000352103.6	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript:transcribed_unprocessed_pseudogene	0	32	2	4.42349	4.5434350000000006	4.66338	0.0103469	0.00992961	0.0877296	0.0850389
chr20	34464285	34464381	7260142	0	+	0.34375	(0.32,0.35]	chr20	737514	3	INTRON	INTRON	ITCH	ENSG00000078747.16	ENST00000374864.10:ENST00000535650.7:ENST00000670516.1:ENST00000665484.1:ENST00000664852.1:ENST00000660337.1:ENST00000262650.10:ENST00000665346.1:ENST00000483727.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	33	2	4.46758	4.543235	4.61889	0.0166646	0.0119306	0.102621	0.0962115
chr3	17451905	17452005	1627507	0	-	0.35	(0.32,0.35]	chr3	168186	230	INTRON	INTRON	TBC1D5	ENSG00000131374.15	ENST00000253692.11:ENST00000696125.1:ENST00000414318.2:ENST00000429383.8:ENST00000446818.6:ENST00000415814.6:ENST00000452492.6:ENST00000412981.5:ENST00000428355.5:ENST00000425944.5:ENST00000430169.5:ENST00000445294.5:ENST00000414349.5:ENST00000443499.6:ENST00000444756.5:ENST00000497531.5:ENST00000443386.5:ENST00000507877.5:ENST00000446863.5:ENST00000434420.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	33	2	4.46758	4.543235	4.61889	0.0166646	0.0119306	0.102621	0.0962115
chr8	99130335	99130435	3812439	0	+	0.33	(0.32,0.35]	chr8	353114	85	INTRON	INTRON	VPS13B	ENSG00000132549.20	ENST00000496144.5:ENST00000683334.1:ENST00000682853.1:ENST00000357162.7:ENST00000358544.7:ENST00000683619.1:ENST00000684269.1:ENST00000683869.1:ENST00000682153.1:ENST00000682358.1:ENST00000682145.1:ENST00000355155.6:ENST00000682234.1:ENST00000683486.1:ENST00000684308.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	33	2	4.46758	4.543235	4.61889	0.0166646	0.0119306	0.102621	0.0962115
chr10	87188295	87188394	4482185	0	+	0.474747	(0.44,0.476]	chr10	412453	7	INTRON	INTRON	SHLD2	ENSG00000122376.12	ENST00000298784.5:ENST00000298786.5	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	3.8344	4.543095	5.25179	0.041276	0.00124521	0.161534	0.0322969
chr17	47651111	47651195	6622587	0	+	0.404762	(0.378,0.408]	chr17	645996	3	INTRON	INTRON	KPNB1	ENSG00000108424.11	ENST00000535458.6:ENST00000583648.6:ENST00000290158.9:ENST00000577918.5:ENST00000577875.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	35	2	3.96471	4.5429949999999995	5.12128	0.032421	0.00251746	0.145026	0.0446195
chr2	38601459	38601554	1099766	0	-	0.347368	(0.32,0.35]	chr2	117962	16	INTRON	INTRON	HNRNPLL	ENSG00000143889.16	ENST00000449105.8:ENST00000409636.5:ENST00000358367.8:ENST00000608859.5:ENST00000378915.7:ENST00000409328.5:ENST00000410076.5:ENST00000498516.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	71	2	3.45772	4.542835	5.62795	0.00128487	7.01392e-4	0.0333518	0.024224
chr1	36288759	36288859	73579	0	+	0.29	(0.28,0.32]	chr1	9392	3	SS3_PROX	SS3_PROX:INTRON	THRAP3	ENSG00000054118.15	ENST00000469141.6:ENST00000648638.1:ENST00000354618.10	protein_coding	protein_coding	protein_coding	protein_coding	2	113	2	3.78387	4.5427	5.30153	0.00332518	2.04803e-5	0.0512081	0.00351769
chr10	101815958	101816055	4680953	0	-	0.443299	(0.44,0.476]	chr10	432022	20	INTRON	INTRON	OGA	ENSG00000198408.14	ENST00000439817.5:ENST00000361464.8:ENST00000357797.9:ENST00000370094.7:ENST00000429860.1	protein_coding	protein_coding	protein_coding	protein_coding	1	74	2	2.86231	4.542619999999999	6.22293	0.012214	2.91965e-6	0.0910127	0.00109445
chr7	127928586	127928686	3405184	0	+	0.46	(0.44,0.476]	chr7	318166	4	SS5_PROX	SS5_PROX:INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000465900.5:ENST00000486037.1:ENST00000484767.5:ENST00000492840.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	65	2	3.59417	4.5425699999999996	5.49097	5.78231e-4	4.8612e-4	0.0218253	0.0203841
chr9	123263939	123264038	4340435	0	-	0.525253	(0.515,0.57]	chr9	398963	266	INTRON	INTRON	STRBP	ENSG00000165209.19	ENST00000348403.10:ENST00000360998.3:ENST00000407982.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	79	2	3.16455	4.542245	5.91994	3.23741e-4	2.28427e-5	0.0159645	0.00389868
chr2	159720943	159721043	899569	0	+	0.47	(0.44,0.476]	chr2	99520	48	INTRON	INTRON	MARCHF7	ENSG00000136536.15	ENST00000539065.5:ENST00000259050.8:ENST00000409175.6:ENST00000421037.1:ENST00000473749.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	88	2	3.42668	4.542005	5.65733	2.3957e-4	9.22416e-5	0.0142132	0.00802983
chr1	112631770	112631870	186448	0	+	0.33	(0.32,0.35]	chr1	20636	115	INTRON	INTRON	CAPZA1	ENSG00000116489.13	ENST00000485542.5:ENST00000476936.5:ENST00000263168.4:ENST00000498626.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	77	2	3.27858	4.541985	5.80539	0.00368368	7.5134e-5	0.0535094	0.00725287
chr16	74665580	74665680	6525796	0	-	0.54	(0.515,0.57]	chr16	631930	3	SS3_PROX	SS3_PROX:INTRON	RFWD3	ENSG00000168411.14	ENST00000361070.9:ENST00000571750.5:ENST00000572337.5:ENST00000571776.1:ENST00000575397.5:ENST00000572990.5:ENST00000576652.1:ENST00000575113.1:ENST00000572840.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	32	2	4.04086	4.541555000000001	5.04225	0.0197045	0.00131841	0.120063	0.0331539
chr1	109372686	109372786	520767	0	-	0.56	(0.515,0.57]	chr1	61195	27	INTRON	INTRON	SORT1	ENSG00000134243.12	ENST00000538502.5:ENST00000256637.8:ENST00000493736.5:ENST00000482236.5:ENST00000633956.1:ENST00000471996.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	30	2	4.31326	4.54155	4.76984	0.0141817	0.00198034	0.0959618	0.0411469
chr2	110644176	110644275	1206509	0	-	0.535354	(0.515,0.57]	chr2	128640	15	INTRON	INTRON	BUB1	ENSG00000169679.15	ENST00000302759.11:ENST00000535254.6:ENST00000409311.5:ENST00000671097.1:ENST00000466333.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	30	2	4.31326	4.54155	4.76984	0.0141817	0.00198034	0.0959618	0.0411469
chr2	176316616	176316716	925690	0	+	0.55	(0.515,0.57]	chr2	101688	119	INTRON	INTRON	MTX2	ENSG00000128654.14	ENST00000420864.5:ENST00000249442.11:ENST00000423461.6:ENST00000443241.5:ENST00000452865.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	30	2	4.31326	4.54155	4.76984	0.0141817	0.00198034	0.0959618	0.0411469
chr22	50191837	50191935	7543922	0	+	0.540816	(0.515,0.57]	chr22	770929	8	INTRON	INTRON	TRABD	ENSG00000170638.10	ENST00000380909.9:ENST00000303434.8:ENST00000463233.1:ENST00000395827.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	30	2	4.31326	4.54155	4.76984	0.0141817	0.00198034	0.0959618	0.0411469
chr7	99000114	99000213	3360547	0	+	0.525253	(0.515,0.57]	chr7	313714	49	INTRON	INTRON	TRRAP	ENSG00000196367.14	ENST00000355540.7:ENST00000359863.8:ENST00000628380.2:ENST00000456197.2:ENST00000446306.7:ENST00000360902.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	30	2	4.31326	4.54155	4.76984	0.0141817	0.00198034	0.0959618	0.0411469
chr9	125329777	125329877	4198949	0	+	0.52	(0.515,0.57]	chr9	383221	3	SS3_PROX	SS3_PROX:INTRON	GAPVD1	ENSG00000165219.23	ENST00000497580.5:ENST00000297933.11:ENST00000470056.5:ENST00000394105.6:ENST00000394083.6:ENST00000495955.5:ENST00000467750.5:ENST00000394104.6:ENST00000312123.13:ENST00000431329.5:ENST00000436712.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	30	2	4.31326	4.54155	4.76984	0.0141817	0.00198034	0.0959618	0.0411469
chr5	181057169	181057266	2563019	0	+	0.298969	(0.28,0.32]	chr5	245228	1	INTRON	INTRON	BTNL9	ENSG00000165810.17	ENST00000327705.14:ENST00000512570.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	168	2	2.48171	4.541525	6.60134	4.96166e-4	1.86919e-5	0.0201536	0.00352513
chr11	5343424	5343524	4896649	0	-	0.47	(0.44,0.476]	chr11	459169	1	CDS_START	CDS_START:CDS:EXON_MRNA:INTRON	HBG2:ENSG00000239920:HBE1:OR51B5	ENSG00000196565.15:ENSG00000239920.2:ENSG00000213931.7:ENSG00000167355.8	ENST00000380252.6:ENST00000380259.7:ENST00000643199.1:ENST00000292896.3:ENST00000380237.5:ENST00000420726.6:ENST00000420465.6:ENST00000415970.6:ENST00000300773.3:ENST00000418729.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:nonsense_mediated_decay:processed_transcript	2	87	2	3.01782	4.54151	6.0652	7.8136e-4	3.50238e-5	0.0257169	0.00499276
chr19	16653361	16653461	7150719	0	-	0.47	(0.44,0.476]	chr19	722452	4	SS3_PROX	SS3_PROX:INTRON	SMIM7	ENSG00000214046.9	ENST00000465250.6:ENST00000481671.6:ENST00000594662.5:ENST00000597781.5:ENST00000598278.5:ENST00000593409.5:ENST00000487803.5:ENST00000627144.2:ENST00000487416.7:ENST00000593404.5:ENST00000597711.5:ENST00000599310.5:ENST00000397349.6:ENST00000602194.5:ENST00000600740.5:ENST00000461488.5:ENST00000463051.5:ENST00000358726.6:ENST00000594507.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	65	2	3.50584	4.541195	5.57655	8.66138e-4	3.3967e-4	0.0266729	0.0170719
chr1	175003043	175003140	265569	0	+	0.391753	(0.378,0.408]	chr1	30984	21	INTRON	INTRON	CACYBP	ENSG00000116161.18	ENST00000613570.4:ENST00000426793.1:ENST00000461977.1:ENST00000483307.1:ENST00000367679.7:ENST00000473925.1:ENST00000406752.1:ENST00000405362.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	106	2	2.95379	4.54118	6.12857	2.62263e-4	3.77503e-5	0.0143317	0.00523787
chr11	9169355	9169455	4908093	0	-	0.53	(0.515,0.57]	chr11	460047	1	SS5_PROX	SS5_PROX:INTRON	DENND5A	ENSG00000184014.9	ENST00000328194.8:ENST00000681203.1:ENST00000530780.2:ENST00000680358.1:ENST00000679999.1:ENST00000679458.1:ENST00000680470.1:ENST00000680599.1:ENST00000680554.1:ENST00000679745.1:ENST00000679926.1:ENST00000680252.1:ENST00000681425.1:ENST00000681158.1:ENST00000679460.1:ENST00000679568.1:ENST00000679446.1:ENST00000680294.1:ENST00000680742.1:ENST00000680885.1:ENST00000680576.1:ENST00000530044.5:ENST00000527700.5:ENST00000526707.5:ENST00000681173.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	30	2	4.399	4.54105	4.6831	0.00708863	0.00471288	0.0754923	0.0600108
chr8	13114194	13114293	3911586	0	-	0.545455	(0.515,0.57]	chr8	358507	30	INTRON	INTRON	DLC1	ENSG00000164741.15	ENST00000276297.9:ENST00000358919.6:ENST00000512044.6:ENST00000520226.5:ENST00000509922.5:ENST00000503161.6:ENST00000515225.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	30	2	4.399	4.54105	4.6831	0.00708863	0.00471288	0.0754923	0.0600108
chr17	76322944	76323044	6841837	0	-	0.54	(0.515,0.57]	chr17	676716	84	INTRON	INTRON	PRPSAP1	ENSG00000161542.17	ENST00000446526.8:ENST00000324684.8:ENST00000488339.1:ENST00000435555.6:ENST00000472686.1:ENST00000586137.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	31	2	4.08538	4.540865	4.99635	0.0253843	8.06602e-4	0.12011	0.0258804
chr2	229888590	229888690	1341328	0	-	0.52	(0.515,0.57]	chr2	140456	81	INTRON	INTRON	TRIP12	ENSG00000153827.14	ENST00000675453.1:ENST00000675903.1:ENST00000283943.9:ENST00000675423.1:ENST00000389044.8:ENST00000389045.7:ENST00000479037.5:ENST00000409677.5:ENST00000435716.5:ENST00000428959.5:ENST00000430954.5:ENST00000343290.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	31	2	4.08538	4.540865	4.99635	0.0253843	8.06602e-4	0.12011	0.0258804
chr1	15938506	15938582	35586	0	+	0.171053	[0,0.28]	chr1	4329	1	SS3_PROX	SS3_PROX:INTRON	SPEN	ENSG00000065526.12	ENST00000375759.8	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	4.07901	4.54082	5.00263	0.0494049	0.013055	0.174117	0.093385
chr1	11831160	11831257	25721	0	+	0.484536	(0.476,0.515]	chr1	2861	5	INTRON	INTRON	CLCN6	ENSG00000011021.23	ENST00000312413.10:ENST00000346436.11:ENST00000400892.3:ENST00000376496.4:ENST00000494028.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	69	2	3.49587	4.54066	5.58545	0.00120011	1.04881e-4	0.0315806	0.00863456
chr11	9295242	9295342	4909241	0	-	0.31	(0.28,0.32]	chr11	460152	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	TMEM41B	ENSG00000166471.11	ENST00000524543.5:ENST00000528080.6:ENST00000299596.8:ENST00000611268.4:ENST00000527813.5:ENST00000533723.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	297	2	4.44541	4.5405549999999995	4.6357	1.17841e-5	3.46023e-8	0.00271708	7.42002e-5
chr15	22497764	22497863	5974544	0	+	0.424242	(0.408,0.44]	chr15	568077	17	INTRON	INTRON	HERC2P2	ENSG00000276550.5	ENST00000613386.4	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	3	113	2	2.74759	4.5403400000000005	6.33309	0.00102152	1.45384e-6	0.029231300000000002	7.22593e-4
chr16	89963162	89963262	6423227	0	+	0.59	(0.57,1]	chr16	616965	4	SS3_PROX	SS3_PROX:INTRON	DEF8	ENSG00000140995.17	ENST00000617948.4:ENST00000563594.6:ENST00000268676.11:ENST00000569453.5:ENST00000570182.5:ENST00000567874.5:ENST00000561959.5:ENST00000563795.1:ENST00000563805.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	45	2	4.10599	4.540285	4.97458	2.67728e-4	1.62785e-5	0.0149989	0.00304426
chr20	62928813	62928910	7362479	0	-	0.453608	(0.44,0.476]	chr20	751215	3	EXON_LNCRNA	EXON_LNCRNA:INTRON	DIDO1:ENSG00000273759	ENSG00000101191.17:ENSG00000273759.1	ENST00000266070.8:ENST00000370371.8:ENST00000619319.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	3	104	2	2.79598	4.5402450000000005	6.28451	5.82325e-4	1.11581e-5	0.0219289	0.00263978
chrX	136926975	136927075	7727639	0	+	0.43	(0.408,0.44]	chrX	790772	12	INTRON	INTRON	TM9SF5P	ENSG00000234062.9	ENST00000650669.2:ENST00000687469.1:ENST00000431464.6:ENST00000685550.1:ENST00000685929.1:ENST00000424306.5:ENST00000687978.1:ENST00000688713.1:ENST00000693626.1:ENST00000686432.1:ENST00000693698.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	36	2	3.83494	4.539975	5.24501	0.0411442	0.00137378	0.161534	0.0336718
chr12	42330821	42330918	5118261	0	+	0.515464	(0.515,0.57]	chr12	482903	5	INTRON	INTRON	PPHLN1	ENSG00000134283.18	ENST00000549190.5:ENST00000337898.10:ENST00000395580.7:ENST00000610488.4:ENST00000619544.4:ENST00000613154.4:ENST00000549774.5:ENST00000551723.5:ENST00000552429.5:ENST00000395568.6:ENST00000256678.12:ENST00000358314.12:ENST00000449194.6:ENST00000552761.5:ENST00000551406.5:ENST00000317560.13:ENST00000432191.6:ENST00000552202.5:ENST00000550535.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	31	2	4.17037	4.539745	4.90912	0.0139194	0.0021669	0.10247	0.0417866
chr16	85550668	85550768	6415337	0	+	0.56	(0.515,0.57]	chr16	615465	1914	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.17037	4.539745	4.90912	0.0139194	0.0021669	0.10247	0.0417866
chr5	179569725	179569825	2559970	0	+	0.52	(0.515,0.57]	chr5	244734	3	SS5_PROX	SS5_PROX:INTRON	RUFY1	ENSG00000176783.15	ENST00000319449.9:ENST00000393448.6:ENST00000393438.6:ENST00000437570.6:ENST00000508609.5:ENST00000514238.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	63	2	3.66151	4.53953	5.41755	4.49566e-4	1.1703e-4	0.0196044	0.00929802
chr2	20338345	20338445	1076662	0	-	0.45	(0.44,0.476]	chr2	115047	49	INTRON	INTRON	PUM2	ENSG00000055917.16	ENST00000361078.7:ENST00000442400.5:ENST00000420234.5:ENST00000429419.6:ENST00000432105.5:ENST00000446940.5:ENST00000424110.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	93	2	2.97428	4.539295	6.10431	0.00125568	5.97057e-6	0.0323608	0.00171457
chr21	43106350	43106450	7468332	0	-	0.31	(0.28,0.32]	chr21	761121	12	INTRON	INTRON	U2AF1	ENSG00000160201.12	ENST00000291552.9:ENST00000380276.6:ENST00000464750.5:ENST00000475639.5:ENST00000486519.5:ENST00000496462.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	84	2	3.63276	4.539295	5.44583	0.00114475	5.8721e-4	0.0308149	0.0220073
chr3	172161960	172162060	1560774	0	+	0.5	(0.476,0.515]	chr3	161551	130	INTRON	INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000421757.5:ENST00000469491.5:ENST00000336824.8:ENST00000423424.5:ENST00000416957.5:ENST00000478016.1:ENST00000443501.1:ENST00000476794.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	87	2	3.29998	4.539155	5.77833	1.88247e-4	1.24749e-4	0.011951	0.010049
chr16	29448221	29448320	6470021	0	-	0.484848	(0.476,0.515]	chr16	625066	8	INTRON	INTRON	ENSG00000288632:BOLA2-SMG1P6	ENSG00000288632.1:ENSG00000261740.7	ENST00000675579.1:ENST00000569622.6:ENST00000565417.6:ENST00000568556.2:ENST00000380596.10	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:nonsense_mediated_decay:lncRNA	4	128	2	2.69838	4.539125	6.37987	5.07516e-4	1.17376e-6	0.020816	6.2583e-4
chr7	129624191	129624291	3412246	0	+	0.33	(0.32,0.35]	chr7	319009	120	INTRON	INTRON	NRF1	ENSG00000106459.15	ENST00000393232.6:ENST00000477428.5:ENST00000454688.5:ENST00000223190.8:ENST00000311967.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	97	2	3.41232	4.53899	5.66566	6.06695e-4	1.30505e-4	0.0226059	0.00983066
chr1	19102333	19102429	385630	0	-	0.385417	(0.378,0.408]	chr1	45699	3	INTRON	INTRON	UBR4	ENSG00000127481.15	ENST00000375254.8:ENST00000375224.1	protein_coding	protein_coding	protein_coding	protein_coding	1	74	2	2.95459	4.53866	6.12273	0.00957623	6.41562e-6	0.0820838	0.00178496
chr2	31996489	31996589	1090976	0	-	0.43	(0.408,0.44]	chr2	116913	333	INTRON	INTRON	MEMO1:DPY30	ENSG00000162959.14:ENSG00000162961.14	ENST00000295065.9:ENST00000446765.5:ENST00000404530.6:ENST00000490459.5:ENST00000426310.6:ENST00000413686.1:ENST00000407893.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	65	2	3.63785	4.538625	5.4394	6.50925e-4	4.70012e-4	0.0232863	0.0196294
chr5	32304263	32304363	2598313	0	-	0.44	(0.408,0.44]	chr5	246856	74	INTRON	INTRON	MTMR12	ENSG00000150712.11	ENST00000280285.9:ENST00000382142.8:ENST00000264934.5:ENST00000505419.5:ENST00000513622.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	65	2	3.63785	4.538625	5.4394	6.50925e-4	4.70012e-4	0.0232863	0.0196294
chr7	66950354	66950451	3326528	0	+	0.42268	(0.408,0.44]	chr7	309359	13	INTRON	INTRON	TMEM248	ENSG00000106609.16	ENST00000341567.8:ENST00000433271.6:ENST00000484751.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	65	2	3.50731	4.53852	5.56973	8.5918e-4	3.81714e-4	0.0265787	0.0181283
chr1	153907277	153907377	557610	0	-	0.24	[0,0.28]	chr1	65995	79	INTRON	INTRON	GATAD2B	ENSG00000143614.10	ENST00000368655.5:ENST00000634544.1:ENST00000634408.1:ENST00000634401.1:ENST00000634791.1:ENST00000637331.1:ENST00000636008.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	35	2	4.29536	4.53839	4.78142	0.0590175	0.00943974	0.167915	0.0861183
chr11	5677783	5677864	4900021	0	-	0.222222	[0,0.28]	chr11	459259	2	SS5_PROX	SS5_PROX:INTRON	ENSG00000239920:TRIM5	ENSG00000239920.2:ENSG00000132256.20	ENST00000380259.7:ENST00000380034.8:ENST00000380027.5:ENST00000433961.5:ENST00000684655.1:ENST00000396847.7:ENST00000682968.1:ENST00000438025.5:ENST00000483835.5:ENST00000492086.5:ENST00000684417.1:ENST00000465634.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	35	2	4.29536	4.53839	4.78142	0.0590175	0.00943974	0.167915	0.0861183
chr11	86022915	86022969	5014376	0	-	0.240741	[0,0.28]	chr11	473002	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000630913.2:ENST00000528398.5:ENST00000356360.9:ENST00000534412.5:ENST00000531558.1:ENST00000531930.5:ENST00000532041.5:ENST00000525162.5:ENST00000528256.1:ENST00000528411.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	35	2	4.29536	4.53839	4.78142	0.0590175	0.00943974	0.167915	0.0861183
chr12	96358338	96358438	5394864	0	-	0.23	[0,0.28]	chr12	514463	231	INTRON	INTRON	CDK17	ENSG00000059758.8	ENST00000261211.8:ENST00000543119.6:ENST00000542666.5:ENST00000551816.5:ENST00000552496.5:ENST00000552262.1	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.29536	4.53839	4.78142	0.0590175	0.00943974	0.167915	0.0861183
chr2	15504613	15504713	1072594	0	-	0.23	[0,0.28]	chr2	114434	4	SS3_PROX	SS3_PROX:INTRON	NBAS	ENSG00000151779.13	ENST00000281513.10:ENST00000427792.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	35	2	4.29536	4.53839	4.78142	0.0590175	0.00943974	0.167915	0.0861183
chr21	43888997	43889097	7414028	0	+	0.22	[0,0.28]	chr21	755692	60	INTRON	INTRON	AGPAT3	ENSG00000160216.21	ENST00000291572.13:ENST00000448287.5:ENST00000398061.5	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.29536	4.53839	4.78142	0.0590175	0.00943974	0.167915	0.0861183
chr6	163427131	163427229	3031828	0	+	0.234694	[0,0.28]	chr6	282559	32	INTRON	INTRON	QKI	ENSG00000112531.17	ENST00000361758.8:ENST00000453779.6:ENST00000275262.11:ENST00000392127.6:ENST00000361752.8:ENST00000361195.6:ENST00000424802.7:ENST00000545607.5:ENST00000544436.5:ENST00000537041.5:ENST00000537124.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	35	2	4.29536	4.53839	4.78142	0.0590175	0.00943974	0.167915	0.0861183
chr7	43903121	43903221	3526708	0	-	0.27	[0,0.28]	chr7	328841	136	INTRON	INTRON	URGCP	ENSG00000106608.17	ENST00000497914.5:ENST00000443736.5:ENST00000402306.7:ENST00000453200.6:ENST00000439702.5:ENST00000426198.5:ENST00000455877.5:ENST00000446958.1:ENST00000477768.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	35	2	4.29536	4.53839	4.78142	0.0590175	0.00943974	0.167915	0.0861183
chr8	99061236	99061336	3811739	0	+	0.25	[0,0.28]	chr8	353071	48	INTRON	INTRON	VPS13B	ENSG00000132549.20	ENST00000496144.5:ENST00000683334.1:ENST00000682853.1:ENST00000357162.7:ENST00000358544.7:ENST00000683619.1:ENST00000441350.2:ENST00000684269.1:ENST00000682806.1:ENST00000683869.1:ENST00000682153.1:ENST00000682358.1:ENST00000682145.1:ENST00000355155.6:ENST00000682234.1:ENST00000683486.1:ENST00000684308.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	35	2	4.29536	4.53839	4.78142	0.0590175	0.00943974	0.167915	0.0861183
chr9	5704578	5704678	4098060	0	+	0.27	[0,0.28]	chr9	373384	142	INTRON	INTRON	RIC1	ENSG00000107036.12	ENST00000251879.10:ENST00000414202.7:ENST00000418622.7:ENST00000545641.5	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.29536	4.53839	4.78142	0.0590175	0.00943974	0.167915	0.0861183
chr9	94436111	94436210	4162781	0	+	0.232323	[0,0.28]	chr9	379497	65	INTRON	INTRON	MFSD14B	ENSG00000148110.17	ENST00000375344.8	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.29536	4.53839	4.78142	0.0590175	0.00943974	0.167915	0.0861183
chrX	138820024	138820124	7899761	0	-	0.28	[0,0.28]	chrX	804225	808	INTRON	INTRON	FGF13	ENSG00000129682.16	ENST00000441825.8:ENST00000626909.2:ENST00000436198.5:ENST00000455663.5:ENST00000448673.1	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.29536	4.53839	4.78142	0.0590175	0.00943974	0.167915	0.0861183
chr16	89517591	89517690	6420433	0	+	0.424242	(0.408,0.44]	chr16	616212	9	EXON_LNCRNA	EXON_LNCRNA:INTRON	SPG7	ENSG00000197912.16	ENST00000647079.1:ENST00000646303.1:ENST00000643649.1:ENST00000643307.1:ENST00000566371.6:ENST00000644498.1:ENST00000645897.1:ENST00000643668.1:ENST00000644225.1:ENST00000645818.2:ENST00000645977.1:ENST00000645063.1:ENST00000646263.1:ENST00000643724.1:ENST00000644781.1:ENST00000644901.1:ENST00000645042.1:ENST00000646531.1:ENST00000646930.1:ENST00000642436.1:ENST00000644210.1:ENST00000564047.2:ENST00000646589.1:ENST00000268704.7:ENST00000646826.1:ENST00000646716.1:ENST00000643345.1:ENST00000341316.6:ENST00000645533.1:ENST00000646958.1:ENST00000642371.1:ENST00000643105.1:ENST00000645354.1:ENST00000643957.1:ENST00000642334.1:ENST00000647227.1:ENST00000562775.2:ENST00000568151.1:ENST00000646445.1:ENST00000564409.2:ENST00000643954.1:ENST00000646399.1:ENST00000644671.1:ENST00000643178.1:ENST00000611189.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	230	2	3.73873	4.538345	5.33796	4.52667e-6	8.9233e-9	0.00156767	3.26849e-5
chr10	73476912	73477010	4649961	0	-	0.367347	(0.35,0.378]	chr10	427911	15	INTRON	INTRON	PPP3CB	ENSG00000107758.16	ENST00000360663.10:ENST00000394828.6:ENST00000394829.6:ENST00000342558.3	protein_coding	protein_coding	protein_coding	protein_coding	1	68	2	3.54186	4.538285	5.53471	8.14353e-4	6.96925e-4	0.02604	0.024224
chr14	54427615	54427714	5897757	0	-	0.272727	[0,0.28]	chr14	560109	42	UTR3	UTR3:EXON_MRNA	CNIH1	ENSG00000100528.12	ENST00000216416.9:ENST00000395573.8:ENST00000557659.5:ENST00000553660.5:ENST00000557690.5:ENST00000554683.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	35	2	4.38376	4.537834999999999	4.69191	0.0269474	0.0258536	0.133676	0.123442
chr15	59082453	59082549	6039842	0	+	0.270833	[0,0.28]	chr15	575024	8	INTRON	INTRON	RNF111	ENSG00000157450.16	ENST00000348370.9:ENST00000559209.5:ENST00000557998.5:ENST00000561186.5:ENST00000558977.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	35	2	4.38376	4.537834999999999	4.69191	0.0269474	0.0258536	0.133676	0.123442
chr5	28779051	28779151	2595337	0	-	0.23	[0,0.28]	chr5	246490	687	INTRON	INTRON	ENSG00000250453	ENSG00000250453.2	ENST00000653909.1:ENST00000660682.1	lncRNA	lncRNA	lncRNA	lncRNA	0	35	2	4.38376	4.537834999999999	4.69191	0.0269474	0.0258536	0.133676	0.123442
chr5	140491043	140491142	2503741	0	+	0.171717	[0,0.28]	chr5	239246	36	INTRON	INTRON	ANKHD1	ENSG00000131503.21	ENST00000297183.10:ENST00000360839.7:ENST00000421134.5:ENST00000246149.10:ENST00000412116.5:ENST00000506755.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	35	2	4.38376	4.537834999999999	4.69191	0.0269474	0.0258536	0.133676	0.123442
chr7	24950888	24950988	3505534	0	-	0.28	[0,0.28]	chr7	327114	329	INTRON	INTRON	OSBPL3	ENSG00000070882.13	ENST00000313367.7:ENST00000415952.1	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.38376	4.537834999999999	4.69191	0.0269474	0.0258536	0.133676	0.123442
chr9	100052216	100052316	4308176	0	-	0.28	[0,0.28]	chr9	395795	4	SS5_PROX	SS5_PROX:INTRON	ERP44	ENSG00000023318.9	ENST00000262455.7:ENST00000685319.1:ENST00000691188.1:ENST00000687025.1:ENST00000687093.1:ENST00000690739.1:ENST00000687017.1:ENST00000690317.1:ENST00000691823.1:ENST00000686275.1:ENST00000689406.1:ENST00000684842.1:ENST00000688230.1:ENST00000685432.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	35	2	4.38376	4.537834999999999	4.69191	0.0269474	0.0258536	0.133676	0.123442
chr18	2723163	2723258	6865563	0	+	0.315789	(0.28,0.32]	chr18	680049	1	INTRON	INTRON	SMCHD1	ENSG00000101596.17	ENST00000320876.11:ENST00000688342.1:ENST00000693213.1:ENST00000577880.5:ENST00000584897.5:ENST00000583441.2:ENST00000690757.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	75	2	3.26551	4.537655	5.8098	0.0030714	5.67703e-4	0.0509893	0.0220072
chr1	77799631	77799731	147750	0	+	0.3	(0.28,0.32]	chr1	16483	159	INTRON	INTRON	MIGA1	ENSG00000180488.16	ENST00000443751.3:ENST00000643390.1:ENST00000643143.1:ENST00000645756.1:ENST00000642959.1:ENST00000370791.8:ENST00000646892.1:ENST00000645526.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	34	2	4.2432	4.537425	4.83165	0.0479043	0.00527257	0.153019	0.0656295
chr10	74295583	74295683	4457215	0	+	0.31	(0.28,0.32]	chr10	411553	522	INTRON	INTRON	ADK	ENSG00000156110.15	ENST00000672429.1:ENST00000539909.6:ENST00000286621.7:ENST00000673352.1:ENST00000673310.1:ENST00000672920.1:ENST00000672394.1:ENST00000372734.5:ENST00000673027.1:ENST00000541550.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	34	2	4.2432	4.537425	4.83165	0.0479043	0.00527257	0.153019	0.0656295
chr10	131924176	131924276	4537098	0	+	0.31	(0.28,0.32]	chr10	418866	112	INTRON	INTRON	PPP2R2D	ENSG00000175470.20	ENST00000455566.6:ENST00000616467.4:ENST00000482010.6:ENST00000470416.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	34	2	4.2432	4.537425	4.83165	0.0479043	0.00527257	0.153019	0.0656295
chr12	116272564	116272664	5425500	0	-	0.32	(0.28,0.32]	chr12	518291	345	INTRON	INTRON	MED13L	ENSG00000123066.9	ENST00000281928.9:ENST00000650226.1:ENST00000548743.2:ENST00000551197.2:ENST00000650375.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	34	2	4.2432	4.537425	4.83165	0.0479043	0.00527257	0.153019	0.0656295
chr14	69660212	69660312	5776198	0	+	0.28	[0,0.28]	chr14	547310	11	INTRON	INTRON	SUSD6	ENSG00000100647.8	ENST00000342745.5:ENST00000556993.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	36	2	4.1879	4.537075	4.88625	0.0396579	0.0173315	0.161534	0.104099
chr17	37199243	37199341	6760917	0	-	0.204082	[0,0.28]	chr17	664739	55	INTRON	INTRON	ACACA	ENSG00000278540.5	ENST00000616317.5:ENST00000614428.4:ENST00000612895.4:ENST00000619546.4:ENST00000617649.4	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.1879	4.537075	4.88625	0.0396579	0.0173315	0.161534	0.104099
chr19	23656145	23656241	7163646	0	-	0.260417	[0,0.28]	chr19	724021	16	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	ZNF675	ENSG00000197372.10	ENST00000601935.5:ENST00000600313.5:ENST00000596211.5:ENST00000359788.9:ENST00000600299.1:ENST00000599535.1:ENST00000597074.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	36	2	4.1879	4.537075	4.88625	0.0396579	0.0173315	0.161534	0.104099
chr2	180989972	180990046	936065	0	+	0.22973	[0,0.28]	chr2	102626	1	UTR3	UTR3:EXON_MRNA:INTRON	UBE2E3	ENSG00000170035.16	ENST00000602303.5:ENST00000602959.5:ENST00000602479.5:ENST00000392415.6:ENST00000602291.5:ENST00000410062.9:ENST00000602475.5:ENST00000602499.5:ENST00000602710.5:ENST00000602762.5:ENST00000602632.1:ENST00000602888.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	36	2	4.1879	4.537075	4.88625	0.0396579	0.0173315	0.161534	0.104099
chr7	138469199	138469299	3434730	0	+	0.26	[0,0.28]	chr7	319959	75	INTRON	INTRON	TRIM24	ENSG00000122779.18	ENST00000343526.9:ENST00000415680.6:ENST00000497516.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	81	2	3.63981	4.537045	5.43428	0.00400834	8.51767e-4	0.0551303	0.0264928
chr2	175153454	175153554	1272194	0	-	0.34	(0.32,0.35]	chr2	134482	19	INTRON	INTRON	ATF2	ENSG00000115966.18	ENST00000345739.9:ENST00000426833.7:ENST00000264110.7:ENST00000409635.5:ENST00000428760.5:ENST00000392544.5:ENST00000417080.5:ENST00000456655.5:ENST00000421438.5:ENST00000429579.5:ENST00000415955.5:ENST00000409499.5:ENST00000435231.6:ENST00000437522.5:ENST00000409833.5:ENST00000413123.5:ENST00000445349.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	77	2	4.11417	4.5369399999999995	4.95971	0.00663522	5.52952e-5	0.0703181	0.00609037
chr9	94459507	94459603	4163024	0	+	0.395833	(0.378,0.408]	chr9	379546	2	UTR3	UTR3:EXON_MRNA	MFSD14B	ENSG00000148110.17	ENST00000375344.8:ENST00000673506.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	66	2	3.56208	4.53691	5.51174	6.94246e-4	5.93655e-4	0.0240761	0.0225024
chr10	5708829	5708929	4384584	0	+	0.49	(0.476,0.515]	chr10	404466	87	INTRON	INTRON	TASOR2	ENSG00000108021.21	ENST00000695832.1:ENST00000328090.9:ENST00000695737.1:ENST00000695833.1:ENST00000695834.1:ENST00000695835.1:ENST00000695836.1:ENST00000473789.5:ENST00000477043.5:ENST00000496681.5:ENST00000480839.6:ENST00000645567.1:ENST00000482419.1:ENST00000463468.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	33	2	4.10113	4.53683	4.97253	0.0226984	0.00311573	0.124921	0.0498063
chr6	15283840	15283940	2823324	0	+	0.49	(0.476,0.515]	chr6	265190	345	INTRON	INTRON	JARID2	ENSG00000008083.14	ENST00000341776.7:ENST00000397311.4	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.10113	4.53683	4.97253	0.0226984	0.00311573	0.124921	0.0498063
chr7	128319881	128319979	3635007	0	-	0.510204	(0.476,0.515]	chr7	337845	14	INTRON	INTRON	RBM28	ENSG00000106344.8	ENST00000223073.6:ENST00000481788.1:ENST00000415472.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	33	2	4.10113	4.53683	4.97253	0.0226984	0.00311573	0.124921	0.0498063
chr8	97697560	97697660	3809598	0	+	0.48	(0.476,0.515]	chr8	352866	60	INTRON	INTRON	MTDH	ENSG00000147649.10	ENST00000336273.8:ENST00000519934.5:ENST00000519293.1:ENST00000521933.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	33	2	4.10113	4.53683	4.97253	0.0226984	0.00311573	0.124921	0.0498063
chr16	57220538	57220634	6361642	0	+	0.302083	(0.28,0.32]	chr16	610697	10	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	RSPRY1	ENSG00000159579.14	ENST00000394420.9:ENST00000537866.5:ENST00000562768.5:ENST00000564530.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	34	2	4.33863	4.536685	4.73474	0.0207276	0.0162835	0.122348	0.101453
chr16	68030658	68030757	6369645	0	+	0.292929	(0.28,0.32]	chr16	612075	32	INTRON	INTRON	DUS2	ENSG00000167264.18	ENST00000571081.6:ENST00000570709.6:ENST00000575677.5:ENST00000576994.5:ENST00000566306.5:ENST00000358896.10:ENST00000564975.5:ENST00000568099.6:ENST00000565263.6:ENST00000567100.5:ENST00000432752.5:ENST00000569289.5:ENST00000564781.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	34	2	4.33863	4.536685	4.73474	0.0207276	0.0162835	0.122348	0.101453
chr19	11004773	11004870	7016016	0	+	0.309278	(0.28,0.32]	chr19	697252	10	INTRON	INTRON	SMARCA4	ENSG00000127616.20	ENST00000644737.1:ENST00000642726.1:ENST00000646484.1:ENST00000643549.1:ENST00000643296.1:ENST00000647230.1:ENST00000642628.1:ENST00000646510.1:ENST00000429416.8:ENST00000344626.10:ENST00000646693.2:ENST00000645460.1:ENST00000541122.6:ENST00000589677.5:ENST00000444061.8:ENST00000590574.6:ENST00000591545.6:ENST00000643995.1:ENST00000644327.1:ENST00000644065.1:ENST00000644963.1:ENST00000643208.1:ENST00000645061.1:ENST00000642350.1:ENST00000644290.1:ENST00000647268.1:ENST00000643857.1:ENST00000644267.1:ENST00000646183.1:ENST00000646746.1:ENST00000643534.1:ENST00000646513.1:ENST00000647011.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	34	2	4.33863	4.536685	4.73474	0.0207276	0.0162835	0.122348	0.101453
chr21	32313917	32314017	7437978	0	-	0.3	(0.28,0.32]	chr21	758722	30	UTR3	UTR3:EXON_MRNA	URB1	ENSG00000142207.7	ENST00000382751.4	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.33863	4.536685	4.73474	0.0207276	0.0162835	0.122348	0.101453
chr7	131070032	131070131	3642297	0	-	0.444444	(0.44,0.476]	chr7	338749	171	INTRON	INTRON	LINC-PINT	ENSG00000231721.7	ENST00000647388.1:ENST00000423414.5:ENST00000433079.5:ENST00000642156.1:ENST00000646429.1:ENST00000451786.5:ENST00000646587.1:ENST00000645248.1:ENST00000642602.1:ENST00000644804.1:ENST00000647288.1:ENST00000643135.1:ENST00000643855.1:ENST00000643874.1:ENST00000644188.1:ENST00000435523.5:ENST00000431189.1:ENST00000642483.1:ENST00000429901.2	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	0	33	2	4.01038	4.53663	5.06288	0.0433743	0.00102416	0.148082	0.0294041
chr10	918890	918989	4542459	0	-	0.50505	(0.476,0.515]	chr10	419304	155	INTRON	INTRON	LARP4B	ENSG00000107929.16	ENST00000316157.8:ENST00000690516.1:ENST00000476529.5:ENST00000406525.6:ENST00000481118.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	65	2	3.44784	4.53653	5.62522	0.00113238	2.4907e-4	0.0308465	0.0145812
chr17	63760513	63760613	6811846	0	-	0.48	(0.476,0.515]	chr17	673167	2	SS5_PROX	SS5_PROX:INTRON	CCDC47	ENSG00000108588.15	ENST00000225726.10:ENST00000403162.7:ENST00000582252.1:ENST00000582331.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	65	2	3.44784	4.53653	5.62522	0.00113238	2.4907e-4	0.0308465	0.0145812
chr21	15859168	15859268	7371409	0	+	0.49	(0.476,0.515]	chr21	752304	89	INTRON	INTRON	USP25	ENSG00000155313.16	ENST00000400183.7:ENST00000285681.6:ENST00000285679.10:ENST00000351097.9:ENST00000449491.1	protein_coding	protein_coding	protein_coding	protein_coding	1	65	2	3.44784	4.53653	5.62522	0.00113238	2.4907e-4	0.0308465	0.0145812
chr1	42931769	42931868	432871	0	-	0.40404	(0.378,0.408]	chr1	52489	1	INTRON	INTRON	SLC2A1	ENSG00000117394.24	ENST00000426263.10:ENST00000630287.2:ENST00000675112.1:ENST00000674765.1:ENST00000475162.3:ENST00000625233.2:ENST00000372500.4:ENST00000415851.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	88	2	3.15415	4.5365	5.91885	4.11608e-4	1.02858e-4	0.0181365	0.00915589
chr18	2723828	2723923	6865570	0	+	0.389474	(0.378,0.408]	chr18	680049	8	INTRON	INTRON	SMCHD1	ENSG00000101596.17	ENST00000320876.11:ENST00000688342.1:ENST00000693213.1:ENST00000577880.5:ENST00000584897.5:ENST00000583441.2:ENST00000690757.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	88	2	3.15415	4.5365	5.91885	4.11608e-4	1.02858e-4	0.0181365	0.00915589
chr7	2358313	2358413	3269655	0	+	0.44	(0.408,0.44]	chr7	303797	25	INTRON	INTRON	EIF3B	ENSG00000106263.19	ENST00000431643.5:ENST00000360876.9:ENST00000413917.5:ENST00000397011.2	protein_coding	protein_coding	protein_coding	protein_coding	1	76	2	2.74518	4.5363999999999995	6.32762	0.0152229	1.00647e-5	0.108535	0.00247446
chr12	69272480	69272578	5163847	0	+	0.336735	(0.32,0.35]	chr12	489054	31	UTR3	UTR3:EXON_MRNA	CPSF6	ENSG00000111605.18	ENST00000435070.7:ENST00000650046.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	130	2	2.62269	4.53635	6.45001	6.6835e-4	1.89779e-5	0.0234462	0.00354138
chr14	37113084	37113184	5877418	0	-	0.39	(0.378,0.408]	chr14	558013	2377	INTRON	INTRON	SLC25A21	ENSG00000183032.12	ENST00000331299.6:ENST00000555449.5:ENST00000557611.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	66	2	3.5186	4.53624	5.55388	8.45009e-4	5.01023e-4	0.0263813	0.0206993
chr6	5260805	5260877	3050081	0	-	0.597222	(0.57,1]	chr6	283852	2	UTR5	UTR5:EXON_MRNA	LYRM4	ENSG00000214113.11	ENST00000330636.9	protein_coding	protein_coding	protein_coding	protein_coding	2	58	2	3.07938	4.535995	5.99261	4.22401e-4	5.25293e-7	0.0183838	4.21981e-4
chr1	65626630	65626729	139274	0	+	0.50505	(0.476,0.515]	chr1	15603	5	INTRON	INTRON	LEPR	ENSG00000116678.20	ENST00000371060.7:ENST00000371059.7:ENST00000349533.11:ENST00000616738.4	protein_coding	protein_coding	protein_coding	protein_coding	1	74	2	3.95123	4.5359750000000005	5.12072	8.42139e-4	1.50038e-4	0.0263691	0.011202
chr20	57408440	57408539	7288944	0	+	0.434343	(0.408,0.44]	chr20	741618	7	UTR3	UTR3:EXON_MRNA	RBM38	ENSG00000132819.17	ENST00000356208.10:ENST00000344785.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	65	2	3.46104	4.5358600000000004	5.61068	0.00105552	3.21002e-4	0.0299229	0.0165409
chr6	163467417	163467517	3032237	0	+	0.28	[0,0.28]	chr6	282579	95	INTRON	INTRON	QKI	ENSG00000112531.17	ENST00000361758.8:ENST00000453779.6:ENST00000275262.11:ENST00000392127.6:ENST00000361752.8:ENST00000361195.6:ENST00000424802.7:ENST00000545607.5:ENST00000544436.5:ENST00000537041.5:ENST00000537124.5:ENST00000545346.1:ENST00000544823.5:ENST00000537883.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	38	2	3.96122	4.535775	5.11033	0.0617993	0.00991388	0.193423	0.0838372
chr12	118381525	118381624	5234449	0	+	0.474747	(0.44,0.476]	chr12	496607	9	INTRON	INTRON	SUDS3	ENSG00000111707.12	ENST00000543473.2	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.1054	4.535155	4.96491	0.0220205	0.0034249	0.123836	0.0517761
chr16	58733440	58733539	6496665	0	-	0.474747	(0.44,0.476]	chr16	628703	92	INTRON	INTRON	GOT2	ENSG00000125166.13	ENST00000245206.10:ENST00000434819.2:ENST00000564400.5:ENST00000496461.5:ENST00000568368.1:ENST00000492378.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	33	2	4.1054	4.535155	4.96491	0.0220205	0.0034249	0.123836	0.0517761
chr6	14996915	14997015	3062899	0	-	0.45	(0.44,0.476]	chr6	284644	1	SS5_PROX	SS5_PROX:INTRON	ENSG00000234261	ENSG00000234261.5	ENST00000629853.2:ENST00000653525.1:ENST00000656468.1:ENST00000656344.1:ENST00000659197.1:ENST00000437648.1	lncRNA	lncRNA	lncRNA	lncRNA	0	33	2	4.1054	4.535155	4.96491	0.0220205	0.0034249	0.123836	0.0517761
chr11	31496307	31496407	4939108	0	-	0.4	(0.378,0.408]	chr11	462601	77	INTRON	INTRON	IMMP1L	ENSG00000148950.11	ENST00000532287.6:ENST00000534812.5:ENST00000526776.5:ENST00000278200.5:ENST00000648582.1:ENST00000533642.1:ENST00000527184.5:ENST00000528161.5:ENST00000532624.5:ENST00000529749.5:ENST00000530023.5:ENST00000531693.1:ENST00000532668.1:ENST00000533921.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	88	2	3.21732	4.535095	5.85287	2.98082e-4	1.39037e-4	0.015483	0.0107072
chr4	82898933	82899026	2180192	0	-	0.322581	(0.32,0.35]	chr4	214424	5	INTRON	INTRON	SEC31A:THAP9-AS1	ENSG00000138674.17:ENSG00000251022.6	ENST00000355196.6:ENST00000503210.5:ENST00000507676.5:ENST00000506495.5:ENST00000507051.1:ENST00000504520.6:ENST00000504792.6:ENST00000512932.5:ENST00000511271.5:ENST00000508772.5:ENST00000513581.5:ENST00000504718.5:ENST00000505028.5:ENST00000507660.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	6	332	2	3.70288	4.53454	5.3662	3.3952e-7	1.06842e-7	2.94567e-4	1.49204e-4
chr1	227297305	227297405	651509	0	-	0.38	(0.378,0.408]	chr1	77110	322	INTRON	INTRON	CDC42BPA	ENSG00000143776.20	ENST00000366766.8:ENST00000366769.7:ENST00000334218.9:ENST00000366767.7:ENST00000366764.8:ENST00000478573.6:ENST00000682551.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	66	2	3.64529	4.534435	5.42358	8.39231e-4	4.71767e-4	0.0266487	0.0196294
chr15	34226529	34226626	5995817	0	+	0.463918	(0.44,0.476]	chr15	570029	10	EXON_MRNA	EXON_MRNA:INTRON	EMC4	ENSG00000128463.13	ENST00000249209.8:ENST00000267750.9:ENST00000560911.5:ENST00000557941.1:ENST00000561372.1:ENST00000559078.5:ENST00000558205.5:ENST00000557879.1:ENST00000558102.1:ENST00000559421.1:ENST00000558810.1:ENST00000561246.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	69	2	3.39322	4.534405	5.67559	0.00187283	6.34721e-5	0.0390476	0.00658818
chr17	5611844	5611944	6716129	0	-	0.38	(0.378,0.408]	chr17	658490	270	INTRON	INTRON	NLRP1	ENSG00000091592.16	ENST00000576905.5:ENST00000572143.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	66	2	3.47377	4.534295	5.59482	0.00103087	4.23783e-4	0.0294094	0.0189958
chr10	7794526	7794626	4387576	0	+	0.34	(0.32,0.35]	chr10	405026	59	INTRON	INTRON	ATP5F1C	ENSG00000165629.20	ENST00000493053.5:ENST00000462760.1:ENST00000460362.5:ENST00000335698.4:ENST00000356708.12:ENST00000465936.5:ENST00000460820.6:ENST00000472202.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	33	2	4.273	4.53391	4.79482	0.0368357	0.00447781	0.138959	0.0610799
chr10	86765813	86765913	4479489	0	+	0.35	(0.32,0.35]	chr10	412292	85	INTRON	INTRON	BMPR1A	ENSG00000107779.14	ENST00000638429.1:ENST00000372037.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	33	2	4.273	4.53391	4.79482	0.0368357	0.00447781	0.138959	0.0610799
chr10	86810582	86810682	4479937	0	+	0.33	(0.32,0.35]	chr10	412292	533	INTRON	INTRON	BMPR1A	ENSG00000107779.14	ENST00000638429.1:ENST00000372037.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	33	2	4.273	4.53391	4.79482	0.0368357	0.00447781	0.138959	0.0610799
chr15	22503536	22503636	5974602	0	+	0.33	(0.32,0.35]	chr15	568077	75	INTRON	INTRON	HERC2P2	ENSG00000276550.5	ENST00000613386.4	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	0	33	2	4.273	4.53391	4.79482	0.0368357	0.00447781	0.138959	0.0610799
chr17	47660132	47660229	6622681	0	+	0.340206	(0.32,0.35]	chr17	646019	11	INTRON	INTRON	KPNB1	ENSG00000108424.11	ENST00000535458.6:ENST00000583648.6:ENST00000290158.9:ENST00000577918.5:ENST00000540627.5:ENST00000582097.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	33	2	4.273	4.53391	4.79482	0.0368357	0.00447781	0.138959	0.0610799
chr3	185681583	185681683	1884906	0	-	0.34	(0.32,0.35]	chr3	188536	53	INTRON	INTRON	IGF2BP2	ENSG00000073792.16	ENST00000382199.7:ENST00000346192.7:ENST00000457616.6:ENST00000421047.3:ENST00000494906.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	33	2	4.273	4.53391	4.79482	0.0368357	0.00447781	0.138959	0.0610799
chr6	15358618	15358718	2824073	0	+	0.34	(0.32,0.35]	chr6	265192	437	INTRON	INTRON	JARID2	ENSG00000008083.14	ENST00000341776.7:ENST00000397311.4	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.273	4.53391	4.79482	0.0368357	0.00447781	0.138959	0.0610799
chr6	53295141	53295241	3107649	0	-	0.34	(0.32,0.35]	chr6	291043	1	SS5_PROX	SS5_PROX:INTRON	ELOVL5	ENSG00000012660.14	ENST00000370918.8:ENST00000542638.5:ENST00000304434.11:ENST00000485336.5:ENST00000465983.5:ENST00000486973.1:ENST00000370913.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	33	2	4.273	4.53391	4.79482	0.0368357	0.00447781	0.138959	0.0610799
chr7	140868400	140868500	3663170	0	-	0.33	(0.32,0.35]	chr7	340105	178	INTRON	INTRON	BRAF	ENSG00000157764.14	ENST00000496384.7:ENST00000644969.2:ENST00000646891.1:ENST00000644905.1:ENST00000642228.1:ENST00000288602.11:ENST00000646730.1:ENST00000497784.2:ENST00000642272.1:ENST00000642808.1:ENST00000643790.1:ENST00000469930.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	33	2	4.273	4.53391	4.79482	0.0368357	0.00447781	0.138959	0.0610799
chr5	87395703	87395803	2668745	0	-	0.44	(0.408,0.44]	chr5	252567	2	INTRON	INTRON	CCNH	ENSG00000134480.16	ENST00000645953.1:ENST00000646883.1:ENST00000505587.5:ENST00000510921.5:ENST00000508855.5:ENST00000256897.9:ENST00000504878.1:ENST00000511207.5:ENST00000504115.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	33	2	4.00385	4.53364	5.06343	0.0454568	0.00101725	0.149888	0.0293497
chr14	96561856	96561949	5810795	0	+	0.365591	(0.35,0.378]	chr14	550979	8	INTRON	INTRON	PAPOLA	ENSG00000090060.19	ENST00000216277.13:ENST00000553689.5:ENST00000392990.6:ENST00000555626.5:ENST00000556459.1:ENST00000553940.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	32	2	4.48184	4.533605	4.58537	0.0191702	0.00703328	0.108861	0.0754576
chr3	129810305	129810405	1817260	0	-	0.37	(0.35,0.378]	chr3	182597	1217	INTRON	INTRON	TMCC1	ENSG00000172765.18	ENST00000393238.8:ENST00000426664.6:ENST00000648771.1:ENST00000505616.5	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.48184	4.533605	4.58537	0.0191702	0.00703328	0.108861	0.0754576
chr8	26350681	26350781	3716694	0	+	0.37	(0.35,0.378]	chr8	345399	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	PPP2R2A	ENSG00000221914.11	ENST00000380737.8:ENST00000520329.5:ENST00000518254.5:ENST00000524169.5:ENST00000518397.5:ENST00000522535.5:ENST00000665949.1:ENST00000521095.5:ENST00000660435.1:ENST00000523925.5:ENST00000524099.5:ENST00000315985.7:ENST00000519636.5:ENST00000522482.5:ENST00000521557.5:ENST00000519439.5:ENST00000521484.5:ENST00000523964.5:ENST00000667651.1:ENST00000657943.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	32	2	4.48184	4.533605	4.58537	0.0191702	0.00703328	0.108861	0.0754576
chrX	72456802	72456902	7835132	0	-	0.36	(0.35,0.378]	chrX	799302	340	INTRON	INTRON	HDAC8	ENSG00000147099.21	ENST00000373583.6:ENST00000373573.9:ENST00000648850.1:ENST00000648452.1:ENST00000649097.1:ENST00000647886.1:ENST00000648855.1:ENST00000647654.1:ENST00000648939.1:ENST00000648504.1:ENST00000648459.1:ENST00000373589.9:ENST00000650604.1:ENST00000647594.1:ENST00000647980.1:ENST00000647859.1:ENST00000650076.1:ENST00000648731.1:ENST00000649181.1:ENST00000649274.1:ENST00000650471.1:ENST00000648276.1:ENST00000470998.2:ENST00000647641.1:ENST00000649543.1:ENST00000373568.7:ENST00000648139.1:ENST00000648834.1:ENST00000648711.1:ENST00000436675.6:ENST00000647606.1:ENST00000415409.6:ENST00000478743.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	32	2	4.48184	4.533605	4.58537	0.0191702	0.00703328	0.108861	0.0754576
chr5	140485990	140486076	2503687	0	+	0.232558	[0,0.28]	chr5	239238	4	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	ANKHD1	ENSG00000131503.21	ENST00000297183.10:ENST00000360839.7:ENST00000421134.5:ENST00000246149.10:ENST00000412116.5:ENST00000465435.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	130	2	2.62887	4.53359	6.43831	0.00205554	1.13087e-4	0.0420839	0.00956778
chrX	121211330	121211430	7715303	0	+	0.27	[0,0.28]	chrX	789390	251	INTRON	INTRON	ENSG00000286163	ENSG00000286163.1	ENST00000651788.1	lncRNA	lncRNA	lncRNA	lncRNA	1	90	2	2.86008	4.533575	6.20707	0.0177015	4.38815e-5	0.105304	0.00536299
chr5	28840439	28840539	2330154	0	+	0.53	(0.515,0.57]	chr5	225135	299	INTRON	INTRON	LINC02109	ENSG00000259786.7	ENST00000658190.1	lncRNA	lncRNA	lncRNA	lncRNA	1	60	2	3.37125	4.5335	5.69575	0.00136343	7.34886e-5	0.0339121	0.00767614
chr11	72819736	72819836	4824667	0	+	0.48	(0.476,0.515]	chr11	450155	2	SS3_PROX	SS3_PROX:INTRON	ATG16L2	ENSG00000168010.11	ENST00000534905.5:ENST00000321297.10:ENST00000435507.6:ENST00000439504.6:ENST00000542908.5:ENST00000537143.5:ENST00000544490.5:ENST00000538842.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	92	2	3.03027	4.533465	6.03666	9.53446e-4	9.45316e-6	0.0282335	0.00222322
chr1	1389729	1389810	359809	0	-	0.469136	(0.44,0.476]	chr1	41769	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CCNL2	ENSG00000221978.13	ENST00000400809.8:ENST00000480479.5:ENST00000482621.5:ENST00000496007.5:ENST00000482365.5:ENST00000481223.6:ENST00000418865.6:ENST00000505849.5:ENST00000488340.5:ENST00000492998.5:ENST00000469113.5:ENST00000480646.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	89	2	3.53227	4.53333	5.53439	4.05863e-4	5.02287e-5	0.0185763	0.00581045
chr1	19091240	19091338	385506	0	-	0.346939	(0.32,0.35]	chr1	45644	19	INTRON	INTRON	UBR4	ENSG00000127481.15	ENST00000375254.8:ENST00000375224.1	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.37269	4.533245000000001	4.6938	0.0154102	0.0137794	0.108569	0.0949306
chr16	53449903	53450003	6353694	0	+	0.34	(0.32,0.35]	chr16	609966	24	INTRON	INTRON	RBL2	ENSG00000103479.17	ENST00000567964.6:ENST00000680543.1:ENST00000262133.11:ENST00000544405.6:ENST00000379935.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	33	2	4.37269	4.533245000000001	4.6938	0.0154102	0.0137794	0.108569	0.0949306
chr5	151033065	151033165	2752068	0	-	0.33	(0.32,0.35]	chr5	259350	2	SS3_PROX	SS3_PROX:SS5_PROX:INTRON	TNIP1	ENSG00000145901.16	ENST00000521591.6:ENST00000520931.5:ENST00000389378.6:ENST00000610874.4:ENST00000315050.11:ENST00000523338.5:ENST00000517504.5:ENST00000610535.5:ENST00000522574.5:ENST00000522226.5:ENST00000518977.5:ENST00000519339.5:ENST00000524280.5:ENST00000523200.5:ENST00000521423.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	33	2	4.37269	4.533245000000001	4.6938	0.0154102	0.0137794	0.108569	0.0949306
chr10	73244329	73244429	4648920	0	-	0.48	(0.476,0.515]	chr10	427688	4	SS3_PROX	SS3_PROX:INTRON	DNAJC9	ENSG00000213551.7	ENST00000469143.1:ENST00000372950.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	34	2	3.97201	4.53312	5.09423	0.030904	0.00204588	0.143385	0.04086
chr10	96130387	96130478	4502195	0	+	0.549451	(0.515,0.57]	chr10	414459	2	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	ZNF518A	ENSG00000177853.15	ENST00000614149.2:ENST00000488700.5:ENST00000624776.4:ENST00000539666.5:ENST00000563195.1:ENST00000316045.10	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	83	2	3.12845	4.5330449999999995	5.93764	4.79786e-4	6.58036e-6	0.0203136	0.00181159
chr20	62326202	62326280	7361247	0	-	0.346154	(0.32,0.35]	chr20	750912	3	SS5_PROX	SS5_PROX:INTRON	LAMA5	ENSG00000130702.15	ENST00000252999.7:ENST00000497363.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	96	2	3.36317	4.5327850000000005	5.7024	5.25722e-4	1.69213e-4	0.0210958	0.0112853
chr13	28145284	28145384	5460896	0	+	0.39	(0.378,0.408]	chr13	523235	58	INTRON	INTRON	PAN3	ENSG00000152520.14	ENST00000503791.5:ENST00000380958.8:ENST00000399613.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	71	2	3.35998	4.532245	5.70451	0.00230615	6.32265e-5	0.0428247	0.00658818
chr15	22553195	22553293	5975115	0	+	0.428571	(0.408,0.44]	chr15	568143	48	INTRON	INTRON	HERC2P2	ENSG00000276550.5	ENST00000613386.4:ENST00000619021.4	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	33	2	4.10594	4.532055	4.95817	0.0219367	0.00372419	0.123836	0.0535094
chr19	15829838	15829933	7025794	0	+	0.431579	(0.408,0.44]	chr19	699128	1	INTRON	INTRON	UCA1	ENSG00000214049.8	ENST00000645805.1:ENST00000644567.2:ENST00000644174.2:ENST00000645764.1:ENST00000643567.1:ENST00000670862.1:ENST00000645877.1:ENST00000646494.1:ENST00000644962.1:ENST00000645389.2:ENST00000655708.1:ENST00000642256.2:ENST00000658824.1:ENST00000659568.1:ENST00000671188.1:ENST00000644796.2:ENST00000655191.1:ENST00000397381.6:ENST00000642440.2:ENST00000666830.1:ENST00000644400.1:ENST00000647292.1:ENST00000665604.1:ENST00000645177.1:ENST00000644845.2:ENST00000645221.1:ENST00000645251.1:ENST00000645708.2:ENST00000645821.2:ENST00000647185.1:ENST00000643552.1:ENST00000642894.1:ENST00000643846.1:ENST00000644103.1:ENST00000644730.1:ENST00000646128.1:ENST00000646397.1:ENST00000643818.1:ENST00000644590.1:ENST00000644502.1:ENST00000664784.1	lncRNA	lncRNA	lncRNA	lncRNA	0	33	2	4.10594	4.532055	4.95817	0.0219367	0.00372419	0.123836	0.0535094
chr2	178511472	178511572	930860	0	+	0.42	(0.408,0.44]	chr2	102252	77	UTR3	UTR3:EXON_MRNA	PLEKHA3	ENSG00000116095.11	ENST00000234453.10	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.10594	4.532055	4.95817	0.0219367	0.00372419	0.123836	0.0535094
chr5	27407817	27407917	2328940	0	+	0.44	(0.408,0.44]	chr5	225090	3	INTRON	INTRON	PURPL	ENSG00000250337.8	ENST00000651409.1:ENST00000650981.1	lncRNA	lncRNA	lncRNA	lncRNA	0	33	2	4.10594	4.532055	4.95817	0.0219367	0.00372419	0.123836	0.0535094
chr9	37585679	37585750	4251724	0	-	0.422535	(0.408,0.44]	chr9	391566	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TOMM5	ENSG00000175768.13	ENST00000540941.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	0	33	2	4.10594	4.532055	4.95817	0.0219367	0.00372419	0.123836	0.0535094
chr4	121822830	121822915	2233623	0	-	0.435294	(0.408,0.44]	chr4	218796	2	SS3_PROX	SS3_PROX:INTRON	CCNA2	ENSG00000145386.11	ENST00000274026.10	protein_coding	protein_coding	protein_coding	protein_coding	1	65	2	3.41323	4.531865	5.6505	0.00129989	2.70553e-4	0.0333764	0.0150813
chr22	28787218	28787317	7494004	0	+	0.525253	(0.515,0.57]	chr22	764605	10	UTR3	UTR3:EXON_MRNA	CCDC117	ENSG00000159873.10	ENST00000448492.6:ENST00000421503.6:ENST00000249064.9	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	3.89856	4.531345	5.16413	0.0280943	8.14815e-4	0.137011	0.0263656
chr2	73948893	73948992	811672	0	+	0.363636	(0.35,0.378]	chr2	90806	16	INTRON	INTRON	DGUOK	ENSG00000114956.20	ENST00000348222.3:ENST00000629438.2:ENST00000418996.5:ENST00000264093.9:ENST00000489796.5:ENST00000462685.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	37	2	3.80129	4.53127	5.26125	0.0504034	0.00191117	0.17488	0.03947
chr1	147171488	147171588	542359	0	-	0.37	(0.35,0.378]	chr1	63612	1	SS5_PROX	SS5_PROX:INTRON	PRKAB2	ENSG00000131791.8	ENST00000254101.4:ENST00000474939.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	32	2	4.39303	4.53116	4.66929	0.0237246	0.00541617	0.118716	0.066545000000000007
chr1	179971601	179971700	267605	0	+	0.363636	(0.35,0.378]	chr1	31299	22	INTRON	INTRON	CEP350	ENSG00000135837.16	ENST00000491495.2:ENST00000367607.8	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.39303	4.53116	4.66929	0.0237246	0.00541617	0.118716	0.066545000000000007
chr10	7801669	7801769	4387658	0	+	0.36	(0.35,0.378]	chr10	405057	1	SS5_PROX	SS5_PROX:INTRON	ATP5F1C	ENSG00000165629.20	ENST00000493053.5:ENST00000335698.4:ENST00000356708.12:ENST00000465936.5:ENST00000473809.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	32	2	4.39303	4.53116	4.66929	0.0237246	0.00541617	0.118716	0.066545000000000007
chr2	108774537	108774636	847984	0	+	0.363636	(0.35,0.378]	chr2	94899	11	INTRON	INTRON	RANBP2	ENSG00000153201.16	ENST00000283195.11	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.39303	4.53116	4.66929	0.0237246	0.00541617	0.118716	0.066545000000000007
chr2	227537293	227537393	1026322	0	+	0.36	(0.35,0.378]	chr2	109622	3	SS5_PROX	SS5_PROX:INTRON	AGFG1	ENSG00000173744.18	ENST00000409979.6:ENST00000310078.13:ENST00000409315.5:ENST00000373671.7:ENST00000409171.5:ENST00000458212.1	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.39303	4.53116	4.66929	0.0237246	0.00541617	0.118716	0.066545000000000007
chr21	37257092	37257192	7462276	0	-	0.36	(0.35,0.378]	chr21	760247	161	INTRON	INTRON	VPS26C	ENSG00000157538.14	ENST00000399000.7:ENST00000309117.11:ENST00000399001.5:ENST00000476950.5:ENST00000488368.5:ENST00000398998.1:ENST00000480452.5:ENST00000475009.1:ENST00000492514.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	32	2	4.39303	4.53116	4.66929	0.0237246	0.00541617	0.118716	0.066545000000000007
chr4	150840784	150840866	2269994	0	-	0.353659	(0.35,0.378]	chr4	220776	4	UTR3	UTR3:EXON_MRNA:INTRON	LRBA	ENSG00000198589.14	ENST00000357115.9:ENST00000651943.2:ENST00000510413.5:ENST00000509835.5:ENST00000651695.1:ENST00000651035.1:ENST00000507224.5:ENST00000502839.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	32	2	4.39303	4.53116	4.66929	0.0237246	0.00541617	0.118716	0.066545000000000007
chr8	143947723	143947821	4084673	0	-	0.357143	(0.35,0.378]	chr8	371512	13	INTRON	INTRON	PLEC	ENSG00000178209.17	ENST00000436759.6:ENST00000527303.2:ENST00000356346.7:ENST00000354958.6:ENST00000322810.8:ENST00000528025.6:ENST00000527096.5:ENST00000685198.1:ENST00000532346.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	32	2	4.39303	4.53116	4.66929	0.0237246	0.00541617	0.118716	0.066545000000000007
chr7	155303895	155303995	3451826	0	+	0.36	(0.35,0.378]	chr7	322631	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	INSIG1	ENSG00000186480.13	ENST00000344756.8:ENST00000340368.9:ENST00000342407.5:ENST00000476756.1	protein_coding	protein_coding	protein_coding	protein_coding	17	715	2	3.14289	4.531135	5.91938	2.26683e-7	1.7443e-11	2.28574e-4	3.34261e-7
chr1	42226186	42226286	431340	0	-	0.38	(0.378,0.408]	chr1	52305	200	INTRON	INTRON	FOXJ3	ENSG00000198815.9	ENST00000372573.5:ENST00000372572.5:ENST00000361776.5:ENST00000545068.5:ENST00000361346.6:ENST00000445886.5	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.21563	4.53095	4.84627	0.0315429	0.00254319	0.13151	0.0465056
chr20	35011265	35011361	7332079	0	-	0.40625	(0.378,0.408]	chr20	746911	6	INTRON	INTRON	TRPC4AP	ENSG00000100991.12	ENST00000252015.3:ENST00000451813.6	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.21563	4.53095	4.84627	0.0315429	0.00254319	0.13151	0.0465056
chr5	177880801	177880898	2557358	0	+	0.391753	(0.378,0.408]	chr5	244378	16	INTRON	INTRON	ENSG00000170089	ENSG00000170089.16	ENST00000515065.6:ENST00000690558.1:ENST00000693614.1:ENST00000506082.5:ENST00000510692.5:ENST00000506672.5:ENST00000512851.5:ENST00000507037.5:ENST00000515525.5:ENST00000502601.5:ENST00000511074.1	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript:transcribed_unprocessed_pseudogene	0	32	2	4.21563	4.53095	4.84627	0.0315429	0.00254319	0.13151	0.0465056
chr6	150878226	150878326	2997984	0	+	0.39	(0.378,0.408]	chr6	280486	4	SS5_PROX	SS5_PROX:INTRON	MTHFD1L	ENSG00000120254.16	ENST00000611279.4:ENST00000367321.8:ENST00000367307.8:ENST00000367308.8:ENST00000618312.4:ENST00000441122.5:ENST00000423867.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	32	2	4.21563	4.53095	4.84627	0.0315429	0.00254319	0.13151	0.0465056
chr8	54145482	54145582	3753757	0	+	0.39	(0.378,0.408]	chr8	349163	23	INTRON	INTRON	MRPL15	ENSG00000137547.9	ENST00000260102.9:ENST00000522521.2	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.21563	4.53095	4.84627	0.0315429	0.00254319	0.13151	0.0465056
chr9	36274664	36274764	4116165	0	+	0.4	(0.378,0.408]	chr9	375223	87	INTRON	INTRON	CLTA	ENSG00000122705.17	ENST00000464497.5	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	0	32	2	4.21563	4.53095	4.84627	0.0315429	0.00254319	0.13151	0.0465056
chr3	33807607	33807707	1394469	0	+	0.48	(0.476,0.515]	chr3	146021	77	INTRON	INTRON	PDCD6IP	ENSG00000170248.15	ENST00000457054.6:ENST00000648706.1:ENST00000435909.5:ENST00000430877.5:ENST00000413073.1:ENST00000307296.8:ENST00000477798.5:ENST00000498147.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	118	2	2.64763	4.530895	6.41416	4.86633e-4	4.70143e-6	0.0199652	0.00158989
chr1	96734766	96734865	168071	0	+	0.363636	(0.35,0.378]	chr1	18215	108	INTRON	INTRON	PTBP2	ENSG00000117569.19	ENST00000482253.5:ENST00000675735.1:ENST00000609116.5:ENST00000674951.1:ENST00000675080.1:ENST00000426398.3:ENST00000460706.5:ENST00000370197.5:ENST00000370198.5:ENST00000476419.5:ENST00000676292.1:ENST00000676096.1:ENST00000675365.1:ENST00000674579.1:ENST00000675401.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	32	2	4.49626	4.53088	4.5655	0.0155464	0.00917582	0.100909	0.0855292
chr6	7200711	7200811	2799299	0	+	0.37	(0.35,0.378]	chr6	263761	110	INTRON	INTRON	RREB1	ENSG00000124782.21	ENST00000379933.7:ENST00000471433.5:ENST00000379938.7:ENST00000349384.10:ENST00000334984.10:ENST00000475946.5:ENST00000483150.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	32	2	4.49626	4.53088	4.5655	0.0155464	0.00917582	0.100909	0.0855292
chr7	77749890	77749977	3343606	0	+	0.367816	(0.35,0.378]	chr7	311443	4	CDS	CDS:EXON_MRNA	RSBN1L	ENSG00000187257.16	ENST00000334955.13:ENST00000445288.5	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.49626	4.53088	4.5655	0.0155464	0.00917582	0.100909	0.0855292
chr9	109007224	109007324	4311470	0	-	0.36	(0.35,0.378]	chr9	396286	76	INTRON	INTRON	CTNNAL1	ENSG00000119326.15	ENST00000374595.8:ENST00000325551.9:ENST00000374593.4	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.49626	4.53088	4.5655	0.0155464	0.00917582	0.100909	0.0855292
chr3	138745575	138745675	1830603	0	-	0.52	(0.515,0.57]	chr3	184037	24	INTRON	INTRON	PIK3CB	ENSG00000051382.9	ENST00000674063.1:ENST00000289153.6:ENST00000477593.5:ENST00000462898.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	62	2	3.40388	4.53063	5.65738	0.00142538	3.32659e-5	0.0340865	0.00461719
chr21	44017742	44017841	7415086	0	+	0.414141	(0.408,0.44]	chr21	755783	48	INTRON	INTRON	TRAPPC10	ENSG00000160218.13	ENST00000291574.9:ENST00000380221.7:ENST00000422875.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	87	2	2.94481	4.53059	6.11637	0.00110214	3.037e-5	0.03038	0.00456454
chr20	38077206	38077305	7269320	0	+	0.484848	(0.476,0.515]	chr20	738717	67	INTRON	INTRON	RPRD1B	ENSG00000101413.12	ENST00000462548.6:ENST00000373433.9:ENST00000449186.2:ENST00000618318.1:ENST00000614670.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	32	2	4.13586	4.530575000000001	4.92529	0.031846	0.00180221	0.13151	0.0392772
chr6	154748512	154748612	3001968	0	+	0.22	[0,0.28]	chr6	280737	61	INTRON	INTRON	SCAF8	ENSG00000213079.10	ENST00000367186.7:ENST00000417268.3:ENST00000461219.5:ENST00000367178.8:ENST00000464628.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	80	2	3.2621000000000002	4.53037	5.79864	0.00367113	0.00125481	0.056059199999999997	0.0323608
chr1	111448218	111448318	522592	0	-	0.38	(0.378,0.408]	chr1	61478	2	SS5_PROX	SS5_PROX:INTRON	WDR77	ENSG00000116455.14	ENST00000235090.10:ENST00000449340.1:ENST00000459665.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	32	2	4.32174	4.5300650000000005	4.73839	0.0132362	0.00837252	0.0999551	0.0774402
chr14	30729220	30729319	5676142	0	+	0.383838	(0.378,0.408]	chr14	540758	63	INTRON	INTRON	SCFD1	ENSG00000092108.22	ENST00000678760.1:ENST00000677690.1:ENST00000678124.1:ENST00000678716.1:ENST00000678402.1:ENST00000679153.1:ENST00000678516.1:ENST00000678802.1:ENST00000679096.1:ENST00000679102.1:ENST00000678475.1:ENST00000676509.1:ENST00000676750.1:ENST00000679165.1:ENST00000676658.1:ENST00000678399.1:ENST00000677413.1:ENST00000554437.6:ENST00000676834.1:ENST00000678858.1:ENST00000553693.6:ENST00000676914.1:ENST00000676465.1:ENST00000676812.1:ENST00000678669.1:ENST00000676520.1:ENST00000676876.1:ENST00000677617.1:ENST00000676954.1:ENST00000677456.1:ENST00000678735.1:ENST00000679342.1:ENST00000677176.1:ENST00000557076.6:ENST00000677637.1:ENST00000677974.1:ENST00000458591.7:ENST00000484733.6:ENST00000556768.5:ENST00000544052.6:ENST00000463622.6:ENST00000676674.1:ENST00000677340.1:ENST00000311943.11:ENST00000679075.1:ENST00000678396.1:ENST00000676473.1:ENST00000396629.6:ENST00000678579.1:ENST00000678104.1:ENST00000676817.1:ENST00000677833.1:ENST00000556486.5:ENST00000677334.1:ENST00000677576.1:ENST00000556256.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	32	2	4.32174	4.5300650000000005	4.73839	0.0132362	0.00837252	0.0999551	0.0774402
chr15	43423623	43423723	6161131	0	-	0.38	(0.378,0.408]	chr15	586702	11	INTRON	INTRON	TP53BP1	ENSG00000067369.14	ENST00000382044.9:ENST00000263801.7:ENST00000382039.7:ENST00000411772.5:ENST00000450115.6:ENST00000572085.5:ENST00000417342.1:ENST00000467474.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	32	2	4.32174	4.5300650000000005	4.73839	0.0132362	0.00837252	0.0999551	0.0774402
chr16	88574134	88574233	6418297	0	+	0.383838	(0.378,0.408]	chr16	615784	32	INTRON	INTRON	ZC3H18	ENSG00000158545.16	ENST00000301011.10:ENST00000452588.6:ENST00000569435.5	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.32174	4.5300650000000005	4.73839	0.0132362	0.00837252	0.0999551	0.0774402
chr19	11570368	11570467	7017742	0	+	0.40404	(0.378,0.408]	chr19	697677	55	INTRON	INTRON	ZNF627	ENSG00000198551.10	ENST00000593279.5:ENST00000585493.5:ENST00000588651.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	32	2	4.32174	4.5300650000000005	4.73839	0.0132362	0.00837252	0.0999551	0.0774402
chr17	62061868	62061968	6810847	0	-	0.32	(0.28,0.32]	chr17	672952	88	INTRON	INTRON	MED13	ENSG00000108510.10	ENST00000397786.7	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.03345	4.530055	5.02666	0.0704058	0.0027935	0.184298	0.0488769
chr1	1552968	1553068	360103	0	-	0.35	(0.32,0.35]	chr1	41847	66	INTRON	INTRON	SSU72	ENSG00000160075.12	ENST00000291386.4:ENST00000378725.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	34	2	4.16186	4.52977	4.89768	0.026079	0.00793135	0.133676	0.076155
chr2	135531126	135531218	1233503	0	-	0.5	(0.476,0.515]	chr2	131251	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	ZRANB3	ENSG00000121988.18	ENST00000264159.11:ENST00000452187.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	32	2	4.21964	4.52963	4.83962	0.0167715	0.00480934	0.110511	0.0602209
chr6	35595662	35595761	3086580	0	-	0.515152	(0.476,0.515]	chr6	288757	41	INTRON	INTRON	FKBP5	ENSG00000096060.15	ENST00000536438.5:ENST00000539068.5:ENST00000357266.9:ENST00000542713.1	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.21964	4.52963	4.83962	0.0167715	0.00480934	0.110511	0.0602209
chr6	42833959	42834058	2867293	0	+	0.484848	(0.476,0.515]	chr6	271325	34	INTRON	INTRON	BICRAL	ENSG00000112624.13	ENST00000614467.4:ENST00000314073.10:ENST00000394168.1	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.21964	4.52963	4.83962	0.0167715	0.00480934	0.110511	0.0602209
chr7	44404239	44404339	3527421	0	-	0.5	(0.476,0.515]	chr7	328954	4	SS5_PROX	SS5_PROX:INTRON	NUDCD3	ENSG00000015676.18	ENST00000355451.8:ENST00000460110.5:ENST00000493613.5:ENST00000472246.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	32	2	4.21964	4.52963	4.83962	0.0167715	0.00480934	0.110511	0.0602209
chr15	41339404	41339503	6004836	0	+	0.444444	(0.44,0.476]	chr15	571290	60	INTRON	INTRON	NUSAP1	ENSG00000137804.14	ENST00000668273.1:ENST00000260359.10:ENST00000558123.5:ENST00000559046.5:ENST00000414849.6:ENST00000450592.6:ENST00000559596.6:ENST00000558582.5:ENST00000560747.5:ENST00000559659.1:ENST00000560177.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	65	2	3.36231	4.529195	5.69608	0.00161678	2.01872e-4	0.0369204	0.0129814
chr1	246488862	246488962	680539	0	-	0.45	(0.44,0.476]	chr1	79781	52	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000490107.6:ENST00000462422.5:ENST00000403792.7:ENST00000470863.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	32	2	4.12843	4.529055	4.92968	0.0337192	0.00171443	0.134145	0.0381936
chr2	44327794	44327886	1110760	0	-	0.456522	(0.44,0.476]	chr2	119177	5	INTRON	INTRON	PREPL	ENSG00000138078.16	ENST00000425263.5:ENST00000409411.6:ENST00000426481.5:ENST00000541738.5:ENST00000409957.5:ENST00000409936.5:ENST00000409272.5:ENST00000260648.10:ENST00000410081.5:ENST00000378520.7:ENST00000378511.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	32	2	4.12843	4.529055	4.92968	0.0337192	0.00171443	0.134145	0.0381936
chr11	73681816	73681915	4984990	0	-	0.353535	(0.35,0.378]	chr11	470855	17	INTRON	INTRON	RAB6A	ENSG00000175582.20	ENST00000310653.10:ENST00000336083.8:ENST00000541973.5:ENST00000536566.5:ENST00000541588.5:ENST00000545625.5:ENST00000540771.5:ENST00000537446.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	68	2	3.69928	4.528779999999999	5.35828	0.00135282	3.94786e-4	0.0336321	0.0178567
chr1	246333884	246333982	678982	0	-	0.357143	(0.35,0.378]	chr1	79759	30	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000453676.5:ENST00000462422.5:ENST00000403792.7:ENST00000470863.1:ENST00000455277.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	34	2	4.07186	4.528735	4.98561	0.0279478	0.00474226	0.137011	0.0600445
chr7	148821666	148821766	3670126	0	-	0.48	(0.476,0.515]	chr7	340580	9	INTRON	INTRON	EZH2	ENSG00000106462.12	ENST00000683292.1:ENST00000320356.7:ENST00000492143.5:ENST00000478654.5:ENST00000350995.6:ENST00000460911.5:ENST00000683744.1:ENST00000682317.1:ENST00000682263.1:ENST00000684300.1:ENST00000476773.5:ENST00000483967.5:ENST00000498186.5:ENST00000483012.1:ENST00000682401.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	143	2	2.50945	4.52872	6.54799	2.84218e-4	2.17221e-6	0.0150568	0.00102673
chr3	69822816	69822916	1449212	0	+	0.32	(0.28,0.32]	chr3	152789	234	INTRON	INTRON	MITF	ENSG00000187098.18	ENST00000687384.1:ENST00000693031.1:ENST00000352241.9:ENST00000642352.1:ENST00000495741.1:ENST00000429090.5:ENST00000433517.5:ENST00000472437.5:ENST00000448226.9:ENST00000689390.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	35	2	4.12807	4.52868	4.92929	0.0338135	0.0098607	0.146709	0.0838128
chr6	88733809	88733909	3156829	0	-	0.32	(0.28,0.32]	chr6	294184	195	INTRON	INTRON	RNGTT	ENSG00000111880.16	ENST00000369485.9:ENST00000369475.7:ENST00000627296.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	35	2	4.12807	4.52868	4.92929	0.0338135	0.0098607	0.146709	0.0838128
chr7	24797720	24797818	3503971	0	-	0.285714	(0.28,0.32]	chr7	326981	13	UTR3	UTR3:EXON_MRNA	OSBPL3	ENSG00000070882.13	ENST00000313367.7	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.12807	4.52868	4.92929	0.0338135	0.0098607	0.146709	0.0838128
chrX	101153747	101153846	7694710	0	+	0.313131	(0.28,0.32]	chrX	787429	52	INTRON	INTRON	CENPI	ENSG00000102384.14	ENST00000684367.1:ENST00000423383.3:ENST00000682095.1:ENST00000372927.5	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.12807	4.52868	4.92929	0.0338135	0.0098607	0.146709	0.0838128
chr11	46642288	46642387	4784924	0	+	0.424242	(0.408,0.44]	chr11	442610	33	INTRON	INTRON	ATG13	ENSG00000175224.17	ENST00000580238.5:ENST00000581416.5:ENST00000529655.5:ENST00000533325.5:ENST00000683050.1:ENST00000583249.5:ENST00000581438.5:ENST00000526508.5:ENST00000530500.5:ENST00000577256.5:ENST00000578626.5:ENST00000524625.5:ENST00000534610.5:ENST00000582547.5:ENST00000359513.8:ENST00000528494.5:ENST00000395549.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	34	2	3.97679	4.52831	5.07983	0.0299485	0.00247652	0.142135	0.0446195
chr12	132668050	132668148	5448970	0	-	0.479592	(0.476,0.515]	chr12	521794	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	POLE	ENSG00000177084.18	ENST00000320574.10:ENST00000672742.1:ENST00000537064.5:ENST00000535270.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	31	2	4.44128	4.5282350000000005	4.61519	0.0151924	0.00528365	0.0994339	0.0656295
chr19	337851	337950	7109548	0	-	0.50505	(0.476,0.515]	chr19	713828	13	INTRON	INTRON	MIER2	ENSG00000105556.12	ENST00000264819.7:ENST00000635755.1:ENST00000586994.7:ENST00000592722.1:ENST00000587966.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	31	2	4.44128	4.5282350000000005	4.61519	0.0151924	0.00528365	0.0994339	0.0656295
chr19	12529386	12529481	7139734	0	-	0.494737	(0.476,0.515]	chr19	720321	3	INTRON	INTRON	ZNF564	ENSG00000249709.8	ENST00000339282.12:ENST00000427105.1:ENST00000596193.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	31	2	4.44128	4.5282350000000005	4.61519	0.0151924	0.00528365	0.0994339	0.0656295
chr2	135065877	135065977	872805	0	+	0.48	(0.476,0.515]	chr2	97740	32	INTRON	INTRON	RAB3GAP1	ENSG00000115839.19	ENST00000539493.3:ENST00000688088.1:ENST00000693554.1:ENST00000690785.1:ENST00000689880.1:ENST00000264158.13:ENST00000690208.1:ENST00000691478.1:ENST00000686114.1:ENST00000685967.1:ENST00000442034.5:ENST00000687199.1:ENST00000691339.1:ENST00000688182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	31	2	4.44128	4.5282350000000005	4.61519	0.0151924	0.00528365	0.0994339	0.0656295
chr22	41659841	41659939	7524581	0	+	0.510204	(0.476,0.515]	chr22	769114	11	INTRON	INTRON	XRCC6	ENSG00000196419.13	ENST00000428575.6:ENST00000402580.7:ENST00000360079.8:ENST00000359308.8:ENST00000405878.5:ENST00000405506.2:ENST00000478914.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	31	2	4.44128	4.5282350000000005	4.61519	0.0151924	0.00528365	0.0994339	0.0656295
chr3	57774639	57774739	1435819	0	+	0.51	(0.476,0.515]	chr3	151661	164	INTRON	INTRON	SLMAP	ENSG00000163681.16	ENST00000295951.7:ENST00000659926.1:ENST00000659705.1:ENST00000671191.1:ENST00000667800.1:ENST00000655012.1:ENST00000428312.6:ENST00000664084.1:ENST00000657480.1:ENST00000467901.1:ENST00000295952.7:ENST00000383718.7:ENST00000449503.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	31	2	4.44128	4.5282350000000005	4.61519	0.0151924	0.00528365	0.0994339	0.0656295
chr4	139161778	139161878	2247193	0	-	0.5	(0.476,0.515]	chr4	219601	219	INTRON	INTRON	ELF2	ENSG00000109381.21	ENST00000394235.6:ENST00000686138.1:ENST00000511184.5:ENST00000511006.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	31	2	4.44128	4.5282350000000005	4.61519	0.0151924	0.00528365	0.0994339	0.0656295
chr9	112323256	112323355	4317857	0	-	0.50505	(0.476,0.515]	chr9	397079	250	INTRON	INTRON	PTBP3	ENSG00000119314.16	ENST00000334318.10:ENST00000458258.5:ENST00000374257.6:ENST00000374255.6:ENST00000343327.6:ENST00000487997.1:ENST00000210227.4:ENST00000450374.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	31	2	4.44128	4.5282350000000005	4.61519	0.0151924	0.00528365	0.0994339	0.0656295
chr1	201853895	201853994	292008	0	+	0.515152	(0.476,0.515]	chr1	33556	4	INTRON	INTRON	IPO9	ENSG00000198700.10	ENST00000361565.9	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.526	4.528115	4.53023	0.0119748	0.00699701	0.0899583	0.0754576
chr18	2579529	2579627	6864472	0	+	0.489796	(0.476,0.515]	chr18	679858	1	INTRON	INTRON	NDC80	ENSG00000080986.13	ENST00000261597.9:ENST00000576274.2	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.526	4.528115	4.53023	0.0119748	0.00699701	0.0899583	0.0754576
chr19	36021878	36021977	7056347	0	+	0.50505	(0.476,0.515]	chr19	704346	21	INTRON	INTRON	ENSG00000267698	ENSG00000267698.2	ENST00000586962.1	lncRNA	lncRNA	lncRNA	lncRNA	0	31	2	4.526	4.528115	4.53023	0.0119748	0.00699701	0.0899583	0.0754576
chr5	10406516	10406601	2318195	0	+	0.482353	(0.476,0.515]	chr5	224696	5	INTRON	INTRON	MARCHF6	ENSG00000145495.16	ENST00000274140.10:ENST00000449913.6:ENST00000511802.5:ENST00000503788.5:ENST00000510792.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	31	2	4.526	4.528115	4.53023	0.0119748	0.00699701	0.0899583	0.0754576
chr5	37004516	37004612	2339726	0	+	0.489583	(0.476,0.515]	chr5	226036	8	INTRON	INTRON	NIPBL	ENSG00000164190.19	ENST00000282516.13:ENST00000448238.2:ENST00000652901.1	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.526	4.528115	4.53023	0.0119748	0.00699701	0.0899583	0.0754576
chr7	6802795	6802892	3478661	0	-	0.505155	(0.476,0.515]	chr7	325549	9	INTRON	INTRON	CCZ1B	ENSG00000146574.16	ENST00000316731.13:ENST00000626257.2:ENST00000467004.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	31	2	4.526	4.528115	4.53023	0.0119748	0.00699701	0.0899583	0.0754576
chrX	124014479	124014578	7717281	0	+	0.494949	(0.476,0.515]	chrX	789468	104	INTRON	INTRON	STAG2	ENSG00000101972.20	ENST00000394477.5:ENST00000218089.13:ENST00000455404.5:ENST00000483575.5:ENST00000687810.1:ENST00000687071.1:ENST00000469481.1:ENST00000458700.5:ENST00000371160.5:ENST00000435103.5:ENST00000687852.1:ENST00000371145.8:ENST00000692982.1:ENST00000371157.7:ENST00000691035.1:ENST00000686802.1:ENST00000691383.1:ENST00000686127.1:ENST00000371144.7:ENST00000458176.5:ENST00000466748.5:ENST00000471107.1:ENST00000428941.5:ENST00000435215.5:ENST00000394478.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	31	2	4.526	4.528115	4.53023	0.0119748	0.00699701	0.0899583	0.0754576
chr6	152982257	152982356	3249668	0	-	0.727273	(0.57,1]	chr6	301947	63	INTRON	INTRON	FBXO5	ENSG00000112029.10	ENST00000367241.3:ENST00000229758.8	protein_coding	protein_coding	protein_coding	protein_coding	5	92	2	3.16099	4.527995	5.895	3.37521e-6	6.04397e-7	0.00130812	4.21585e-4
chr5	150552825	150552921	2520371	0	+	0.458333	(0.44,0.476]	chr5	241116	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NDST1	ENSG00000070614.15	ENST00000523767.5:ENST00000261797.7:ENST00000521752.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	32	2	4.22393	4.527975	4.83202	0.0162322	0.00525002	0.109464	0.0633615
chr5	109358595	109358693	2701851	0	-	0.44898	(0.44,0.476]	chr5	254328	22	INTRON	INTRON	PJA2	ENSG00000198961.10	ENST00000361557.4:ENST00000361189.7	protein_coding	protein_coding	protein_coding	protein_coding	1	67	2	3.96926	4.527925	5.08659	0.00226401	8.75142e-5	0.0425438	0.00785215
chr6	73520716	73520815	3139454	0	-	0.585859	(0.57,1]	chr6	292540	8	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	EEF1A1	ENSG00000156508.19	ENST00000676547.1:ENST00000309268.11:ENST00000610520.5:ENST00000316292.13:ENST00000356303.7:ENST00000331523.7:ENST00000490569.6:ENST00000678515.1:ENST00000676710.1:ENST00000678702.1:ENST00000677236.1:ENST00000455918.2:ENST00000491404.2:ENST00000488500.2:ENST00000495333.6:ENST00000678703.1:ENST00000677062.1:ENST00000678143.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	18	533	2	4.46968	4.527850000000001	4.58602	1e-12	1e-12	5.45623e-8	4.97648e-8
chr7	127994706	127994805	3405851	0	+	0.525253	(0.515,0.57]	chr7	318184	33	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000486037.1:ENST00000484767.5:ENST00000470723.5:ENST00000467238.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	123	2	4.48877	4.5275099999999995	4.56625	2.84976e-6	2.68161e-6	0.0011973	0.00105178
chr1	25455858	25455956	48200	0	+	0.336735	(0.32,0.35]	chr1	5937	11	INTRON	INTRON	MACO1	ENSG00000204178.11	ENST00000399766.7:ENST00000374343.5:ENST00000647928.1:ENST00000470035.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	94	2	3.11857	4.527455	5.93634	5.76454e-4	2.02056e-4	0.0218153	0.0129814
chr1	111138469	111138565	522464	0	-	0.583333	(0.57,1]	chr1	61426	5	INTRON	INTRON	DRAM2	ENSG00000156171.15	ENST00000484310.6:ENST00000539140.6:ENST00000286692.8:ENST00000496430.6:ENST00000480600.6:ENST00000490780.5:ENST00000463682.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	24	2	4.49107	4.52736	4.56365	0.00220544	0.00129848	0.0417893	0.0333764
chr1	230134125	230134225	334748	0	+	0.58	(0.57,1]	chr1	38930	422	INTRON	INTRON	GALNT2	ENSG00000143641.10	ENST00000494106.1:ENST00000366672.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	24	2	4.49107	4.52736	4.56365	0.00220544	0.00129848	0.0417893	0.0333764
chr19	49496364	49496431	7089880	0	+	0.58209	(0.57,1]	chr19	709980	1	EXON_MRNA	EXON_MRNA	RPS11	ENSG00000142534.7	ENST00000600027.5:ENST00000599167.5:ENST00000602252.5	protein_coding	retained_intron	protein_coding	retained_intron	0	24	2	4.49107	4.52736	4.56365	0.00220544	0.00129848	0.0417893	0.0333764
chr9	137718172	137718271	4224481	0	+	0.606061	(0.57,1]	chr9	388223	5	INTRON	INTRON	EHMT1	ENSG00000181090.21	ENST00000462484.5:ENST00000371394.6:ENST00000460843.6:ENST00000629335.2:ENST00000636027.1:ENST00000460486.3:ENST00000637161.1:ENST00000637261.1:ENST00000637977.1:ENST00000626066.2:ENST00000638071.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	24	2	4.49107	4.52736	4.56365	0.00220544	0.00129848	0.0417893	0.0333764
chr19	45118916	45119016	7079296	0	+	0.43	(0.408,0.44]	chr19	708078	101	INTRON	INTRON	PPP1R37	ENSG00000104866.11	ENST00000544069.2:ENST00000221462.9:ENST00000544897.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	65	2	3.75755	4.526835	5.29612	0.00113523	2.62433e-4	0.0307488	0.0143317
chr1	32390387	32390487	415155	0	-	0.46	(0.44,0.476]	chr1	50088	31	INTRON	INTRON	BSDC1	ENSG00000160058.19	ENST00000455895.7:ENST00000444377.5:ENST00000341071.11:ENST00000526031.5:ENST00000419121.6:ENST00000446293.6:ENST00000373520.8:ENST00000527513.5:ENST00000527163.5:ENST00000530485.1:ENST00000474414.5:ENST00000530876.5:ENST00000530753.1:ENST00000533084.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	31	2	4.43377	4.526655	4.61954	0.0162803	0.00506805	0.101453	0.0646039
chr13	99356927	99357026	5526012	0	+	0.464646	(0.44,0.476]	chr13	528280	3	INTRON	INTRON	UBAC2	ENSG00000134882.16	ENST00000355700.9:ENST00000403766.8:ENST00000376440.6:ENST00000494576.5:ENST00000473194.5:ENST00000460562.5:ENST00000480738.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	31	2	4.43377	4.526655	4.61954	0.0162803	0.00506805	0.101453	0.0646039
chr14	57246017	57246113	5904078	0	-	0.46875	(0.44,0.476]	chr14	560778	13	INTRON	INTRON	EXOC5	ENSG00000070367.16	ENST00000621441.5:ENST00000413566.6:ENST00000340918.11:ENST00000555148.5:ENST00000554598.5:ENST00000556911.5:ENST00000555749.5:ENST00000556318.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	31	2	4.43377	4.526655	4.61954	0.0162803	0.00506805	0.101453	0.0646039
chr20	35790002	35790102	7263063	0	+	0.47	(0.44,0.476]	chr20	738060	70	INTRON	INTRON	PHF20	ENSG00000025293.17	ENST00000461122.5:ENST00000461405.1:ENST00000374012.8:ENST00000452270.5:ENST00000374000.8:ENST00000339089.10:ENST00000481202.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	31	2	4.43377	4.526655	4.61954	0.0162803	0.00506805	0.101453	0.0646039
chr20	63927834	63927934	7301288	0	+	0.26	[0,0.28]	chr20	743142	1	SS3_PROX	SS3_PROX:INTRON	DNAJC5	ENSG00000101152.11	ENST00000360864.9:ENST00000470551.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	80	2	3.57809	4.526615	5.47514	0.00354561	0.00109779	0.0529186	0.0303708
chr10	128116736	128116836	4715605	0	-	0.55	(0.515,0.57]	chr10	435165	2	SS3_PROX	SS3_PROX:INTRON	MKI67	ENSG00000148773.14	ENST00000368654.8:ENST00000368653.7:ENST00000478293.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	30	2	4.20381	4.526585	4.84936	0.0189208	0.00146032	0.108861	0.0349875
chr7	6705523	6705623	3478550	0	-	0.56	(0.515,0.57]	chr7	325511	3	SS3_PROX	SS3_PROX:INTRON	ZNF12	ENSG00000164631.19	ENST00000405858.6:ENST00000342651.9:ENST00000394917.3:ENST00000491565.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	30	2	4.20381	4.526585	4.84936	0.0189208	0.00146032	0.108861	0.0349875
chr12	14536303	14536386	5272671	0	-	0.445783	(0.44,0.476]	chr12	502555	1	SS5_PROX	SS5_PROX:INTRON	PLBD1	ENSG00000121316.11	ENST00000240617.10:ENST00000541618.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	31	2	4.5227	4.52652	4.53034	0.0128818	0.00672609	0.0926667	0.0738715
chr14	57263659	57263759	5904259	0	-	0.46	(0.44,0.476]	chr14	560793	156	INTRON	INTRON	EXOC5	ENSG00000070367.16	ENST00000621441.5:ENST00000413566.6:ENST00000340918.11:ENST00000555148.5:ENST00000554598.5:ENST00000555749.5:ENST00000556318.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	31	2	4.5227	4.52652	4.53034	0.0128818	0.00672609	0.0926667	0.0738715
chr15	90580335	90580435	6100232	0	+	0.45	(0.44,0.476]	chr15	580749	398	INTRON	INTRON	CRTC3	ENSG00000140577.17	ENST00000268184.11:ENST00000420329.6:ENST00000691029.1:ENST00000686240.1:ENST00000560098.5:ENST00000561218.5:ENST00000692149.1:ENST00000558619.5:ENST00000560927.1:ENST00000687075.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	31	2	4.5227	4.52652	4.53034	0.0128818	0.00672609	0.0926667	0.0738715
chr3	71466950	71467050	1743987	0	-	0.45	(0.44,0.476]	chr3	177320	3	SS5_PROX	SS5_PROX:INTRON	FOXP1	ENSG00000114861.24	ENST00000318789.11:ENST00000649528.3:ENST00000615603.5:ENST00000493089.7:ENST00000649596.1:ENST00000648710.2:ENST00000327590.9:ENST00000648321.1:ENST00000649610.2:ENST00000648718.1:ENST00000649631.1:ENST00000648384.1:ENST00000648380.1:ENST00000650068.2:ENST00000650295.1:ENST00000648895.1:ENST00000318779.7:ENST00000471386.3:ENST00000650156.1:ENST00000649133.1:ENST00000649145.1:ENST00000648192.1:ENST00000649328.1:ENST00000649175.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	31	2	4.5227	4.52652	4.53034	0.0128818	0.00672609	0.0926667	0.0738715
chr7	4975610	4975705	3271050	0	+	0.463158	(0.44,0.476]	chr7	304005	11	INTRON	INTRON	RNF216P1	ENSG00000196204.12	ENST00000406089.6:ENST00000493407.5:ENST00000477090.5:ENST00000404006.5:ENST00000403969.5:ENST00000494947.5:ENST00000429902.5	lncRNA	lncRNA	lncRNA	lncRNA	0	31	2	4.5227	4.52652	4.53034	0.0128818	0.00672609	0.0926667	0.0738715
chr17	78381117	78381217	6682316	0	+	0.48	(0.476,0.515]	chr17	652778	1	SS5_PROX	SS5_PROX:INTRON	PGS1	ENSG00000087157.19	ENST00000262764.11:ENST00000589425.5:ENST00000586510.6:ENST00000586325.5:ENST00000589689.5:ENST00000589426.5:ENST00000588169.5:ENST00000592043.5:ENST00000587356.1:ENST00000585521.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	69	2	3.60627	4.5264	5.44653	7.49088e-4	2.03754e-4	0.0251179	0.0124395
chr1	37968707	37968780	426309	0	-	0.383562	(0.378,0.408]	chr1	51680	2	INTRON	INTRON	SF3A3	ENSG00000183431.12	ENST00000373019.5	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	3.82294	4.52609	5.22924	0.044228	0.00172721	0.162255	0.0374701
chr14	21377010	21377110	5835465	0	-	0.38	(0.378,0.408]	chr14	554601	32	INTRON	INTRON	SUPT16H	ENSG00000092201.10	ENST00000216297.7:ENST00000556309.5:ENST00000556217.5:ENST00000557652.1:ENST00000555752.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	36	2	3.82294	4.52609	5.22924	0.044228	0.00172721	0.162255	0.0374701
chr1	235168428	235168524	662236	0	-	0.416667	(0.408,0.44]	chr1	78414	17	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	ARID4B	ENSG00000054267.22	ENST00000474953.5:ENST00000349213.7:ENST00000366603.6:ENST00000264183.9:ENST00000421364.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	32	2	4.12187	4.526055	4.93024	0.0354689	0.00170369	0.137535	0.0381936
chr15	28255282	28255371	6123374	0	-	0.41573	(0.408,0.44]	chr15	583309	4	INTRON	INTRON	HERC2	ENSG00000128731.18	ENST00000261609.13:ENST00000564734.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	32	2	4.12187	4.526055	4.93024	0.0354689	0.00170369	0.137535	0.0381936
chr15	43768088	43768188	6012272	0	+	0.42	(0.408,0.44]	chr15	572673	2	SS3_PROX	SS3_PROX:INTRON	PDIA3	ENSG00000167004.14	ENST00000687794.1:ENST00000686402.1:ENST00000686175.1:ENST00000687211.1:ENST00000685864.1:ENST00000691274.1:ENST00000686314.1:ENST00000300289.10:ENST00000688851.1:ENST00000687167.1:ENST00000688652.1:ENST00000693281.1:ENST00000691893.1:ENST00000684793.1:ENST00000692341.1:ENST00000690274.1:ENST00000690371.1:ENST00000455250.2:ENST00000692484.1:ENST00000689152.1:ENST00000687465.1:ENST00000434494.5:ENST00000686227.1:ENST00000497349.2:ENST00000686374.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	32	2	4.12187	4.526055	4.93024	0.0354689	0.00170369	0.137535	0.0381936
chr4	70941622	70941722	1970898	0	+	0.41	(0.408,0.44]	chr4	197571	387	INTRON	INTRON	MOB1B	ENSG00000173542.9	ENST00000502869.5:ENST00000509041.5:ENST00000309395.7:ENST00000396051.2:ENST00000511449.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	32	2	4.12187	4.526055	4.93024	0.0354689	0.00170369	0.137535	0.0381936
chr10	72717398	72717498	4450345	0	+	0.54	(0.515,0.57]	chr10	410752	11	INTRON	INTRON	MCU	ENSG00000156026.15	ENST00000373053.8:ENST00000357157.10:ENST00000604679.5:ENST00000604372.5:ENST00000603649.5:ENST00000605597.5:ENST00000536019.5:ENST00000604152.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	30	2	4.28921	4.525824999999999	4.76244	0.00990051	0.00362147	0.0877296	0.0533855
chr16	74944823	74944923	6526882	0	-	0.56	(0.515,0.57]	chr16	632116	16	INTRON	INTRON	WDR59	ENSG00000103091.15	ENST00000262144.11:ENST00000616369.4:ENST00000536050.5:ENST00000568462.5:ENST00000568323.5:ENST00000563111.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	30	2	4.28921	4.525824999999999	4.76244	0.00990051	0.00362147	0.0877296	0.0533855
chr20	63953393	63953491	7363804	0	-	0.530612	(0.515,0.57]	chr20	751484	24	INTRON	INTRON	UCKL1	ENSG00000198276.16	ENST00000354216.11:ENST00000358711.7:ENST00000483710.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	30	2	4.28921	4.525824999999999	4.76244	0.00990051	0.00362147	0.0877296	0.0533855
chr6	88232023	88232122	3153468	0	-	0.535354	(0.515,0.57]	chr6	294127	532	INTRON	INTRON	ENSG00000234426	ENSG00000234426.3	ENST00000648572.1	lncRNA	lncRNA	lncRNA	lncRNA	0	30	2	4.28921	4.525824999999999	4.76244	0.00990051	0.00362147	0.0877296	0.0533855
chr19	11826266	11826366	7019022	0	+	0.37	(0.35,0.378]	chr19	697799	87	INTRON	INTRON	ZNF440	ENSG00000171295.13	ENST00000304060.10:ENST00000457526.1:ENST00000427505.5:ENST00000588954.5	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.08816	4.52573	4.9633	0.046021	0.00198929	0.149888	0.0411469
chr2	175109270	175109370	1271738	0	-	0.36	(0.35,0.378]	chr2	134410	113	INTRON	INTRON	ATF2	ENSG00000115966.18	ENST00000345739.9:ENST00000426833.7:ENST00000264110.7:ENST00000409437.5:ENST00000409635.5:ENST00000435004.6:ENST00000428760.5:ENST00000392544.5:ENST00000417080.5:ENST00000456655.5:ENST00000421438.5:ENST00000429579.5:ENST00000415955.5:ENST00000409499.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	33	2	4.08816	4.52573	4.9633	0.046021	0.00198929	0.149888	0.0411469
chr1	224950972	224951072	322565	0	+	0.38	(0.378,0.408]	chr1	37105	208	INTRON	INTRON	DNAH14	ENSG00000185842.16	ENST00000445597.6:ENST00000430092.5:ENST00000366850.7:ENST00000400952.7:ENST00000682510.1:ENST00000366849.5:ENST00000498360.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	72	2	3.05502	4.525675	5.99633	0.00689519	1.32573e-5	0.0717484	0.00270432
chr11	58616515	58616615	4794127	0	+	0.27	[0,0.28]	chr11	443873	4	SS3_PROX	SS3_PROX:INTRON	ZFP91	ENSG00000186660.15	ENST00000316059.7	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.20106	4.5251850000000005	4.84931	0.0695895	0.00779241	0.184298	0.0787356
chr17	59078958	59079056	6801647	0	-	0.255102	[0,0.28]	chr17	671779	29	INTRON	INTRON	TRIM37	ENSG00000108395.14	ENST00000393066.7:ENST00000577554.5:ENST00000262294.12:ENST00000393065.6:ENST00000581468.1:ENST00000582852.1:ENST00000580973.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	35	2	4.20106	4.5251850000000005	4.84931	0.0695895	0.00779241	0.184298	0.0787356
chr6	105388981	105389080	3174689	0	-	0.242424	[0,0.28]	chr6	296104	111	INTRON	INTRON	PREP	ENSG00000085377.15	ENST00000652536.2:ENST00000369110.8	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.20106	4.5251850000000005	4.84931	0.0695895	0.00779241	0.184298	0.0787356
chr4	2312709	2312809	2098653	0	-	0.43	(0.408,0.44]	chr4	207673	68	INTRON	INTRON	ZFYVE28	ENSG00000159733.14	ENST00000290974.7:ENST00000511071.5:ENST00000515312.5	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.22447	4.524885	4.8253	0.0161655	0.0056738	0.109464	0.0653997
chr7	141748814	141748914	3440207	0	+	0.41	(0.408,0.44]	chr7	320695	24	INTRON	INTRON	SSBP1	ENSG00000106028.11	ENST00000612337.4:ENST00000265304.11:ENST00000498107.5:ENST00000469123.5:ENST00000467681.5:ENST00000465582.5:ENST00000465167.1:ENST00000484178.5:ENST00000481508.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	32	2	4.22447	4.524885	4.8253	0.0161655	0.0056738	0.109464	0.0653997
chr12	57297051	57297139	5337906	0	-	0.352273	(0.35,0.378]	chr12	510660	1	SS5_PROX	SS5_PROX:INTRON	R3HDM2	ENSG00000179912.21	ENST00000402412.6:ENST00000347140.7:ENST00000358907.6:ENST00000441731.6:ENST00000634871.1:ENST00000403821.6:ENST00000547262.1	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.19022	4.5244599999999995	4.8587	0.0209891	0.00695662	0.122348	0.0718189
chr7	98188667	98188765	3358432	0	+	0.357143	(0.35,0.378]	chr7	313281	13	INTRON	INTRON	LMTK2	ENSG00000164715.6	ENST00000297293.6	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.19022	4.5244599999999995	4.8587	0.0209891	0.00695662	0.122348	0.0718189
chrX	135889778	135889877	7895462	0	-	0.353535	(0.35,0.378]	chrX	803847	8	INTRON	INTRON	CT45A10	ENSG00000269586.8	ENST00000682849.1	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.19022	4.5244599999999995	4.8587	0.0209891	0.00695662	0.122348	0.0718189
chr10	848552	848652	4541746	0	-	0.23	[0,0.28]	chr10	419263	31	INTRON	INTRON	LARP4B	ENSG00000107929.16	ENST00000688365.1:ENST00000316157.8:ENST00000690516.1:ENST00000689323.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	35	2	4.28915	4.524395	4.75964	0.0319595	0.0232081	0.14477	0.118148
chr15	89610740	89610839	6097467	0	+	0.232323	[0,0.28]	chr15	580351	14	INTRON	INTRON	TICRR	ENSG00000140534.14	ENST00000268138.12:ENST00000560985.5	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.28915	4.524395	4.75964	0.0319595	0.0232081	0.14477	0.118148
chr6	97222107	97222207	3164148	0	-	0.28	[0,0.28]	chr6	295089	351	INTRON	INTRON	MMS22L	ENSG00000146263.12	ENST00000683635.1:ENST00000275053.8:ENST00000369251.6	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.28915	4.524395	4.75964	0.0319595	0.0232081	0.14477	0.118148
chr22	16784709	16784809	7546246	0	-	0.34	(0.32,0.35]	chr22	771314	3	SS3_PROX	SS3_PROX:INTRON	XKR3	ENSG00000172967.8	ENST00000331428.5:ENST00000684488.1	protein_coding	protein_coding	protein_coding	protein_coding	1	70	2	3.49869	4.524065	5.54944	0.00108004	9.42646e-4	0.0300133	0.0280811
chr2	30595232	30595331	728307	0	+	0.474747	(0.44,0.476]	chr2	84017	267	INTRON	INTRON	LCLAT1	ENSG00000172954.14	ENST00000319406.8:ENST00000379509.8:ENST00000491680.6:ENST00000309052.8:ENST00000478015.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	142	2	4.44352	4.524035	4.60455	5.39347e-6	4.44248e-6	0.00160614	0.00154941
chr1	8793487	8793586	373543	0	-	0.434343	(0.408,0.44]	chr1	43555	5	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000656437.1:ENST00000659924.1	protein_coding	protein_coding	protein_coding	protein_coding	1	69	2	3.37162	4.523885	5.67615	0.00208674	6.28788e-5	0.0411801	0.00658818
chr1	12005027	12005118	26708	0	+	0.417582	(0.408,0.44]	chr1	3150	1	SS5_PROX	SS5_PROX:INTRON	MFN2	ENSG00000116688.18	ENST00000444836.5:ENST00000674817.1:ENST00000675053.1:ENST00000675298.1:ENST00000675817.1:ENST00000674548.1:ENST00000675959.1:ENST00000675872.1:ENST00000676426.1:ENST00000674658.1:ENST00000674910.1:ENST00000675231.1:ENST00000235329.10:ENST00000676293.1:ENST00000675919.1:ENST00000675987.1:ENST00000675512.1:ENST00000675113.1:ENST00000675483.1:ENST00000675528.1:ENST00000675404.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	31	2	4.42713	4.52361	4.62009	0.0173083	0.00504155	0.104099	0.0646039
chr11	72020803	72020903	4976223	0	-	0.42	(0.408,0.44]	chr11	470063	2	SS5_PROX	SS5_PROX:INTRON	NUMA1	ENSG00000137497.19	ENST00000393695.8:ENST00000358965.10:ENST00000351960.10:ENST00000613205.4:ENST00000620566.4:ENST00000542977.5:ENST00000537217.5:ENST00000540843.5:ENST00000534987.5:ENST00000536119.5:ENST00000544238.5:ENST00000543937.5:ENST00000543009.5:ENST00000537930.5:ENST00000544129.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	31	2	4.42713	4.52361	4.62009	0.0173083	0.00504155	0.104099	0.0646039
chr11	118752880	118752975	5045970	0	-	0.421053	(0.408,0.44]	chr11	475734	4	INTRON	INTRON	DDX6	ENSG00000110367.14	ENST00000534980.7:ENST00000620157.4:ENST00000529162.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	31	2	4.42713	4.52361	4.62009	0.0173083	0.00504155	0.104099	0.0646039
chr12	9693948	9694048	5075793	0	+	0.42	(0.408,0.44]	chr12	479920	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	CLEC2D	ENSG00000069493.15	ENST00000290855.11:ENST00000325960.11:ENST00000261340.11:ENST00000444971.6:ENST00000479877.5:ENST00000261339.10:ENST00000543300.5:ENST00000545918.5:ENST00000430909.5:ENST00000544322.1:ENST00000460309.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	31	2	4.42713	4.52361	4.62009	0.0173083	0.00504155	0.104099	0.0646039
chr15	28647690	28647788	5988513	0	+	0.428571	(0.408,0.44]	chr15	569323	48	INTRON	INTRON	HERC2P9	ENSG00000206149.11	ENST00000529624.5	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	0	31	2	4.42713	4.52361	4.62009	0.0173083	0.00504155	0.104099	0.0646039
chr16	70059263	70059363	6509654	0	-	0.42	(0.408,0.44]	chr16	630371	159	INTRON	INTRON	PDXDC2P-NPIPB14P:PDXDC2P	ENSG00000196696.13:ENSG00000255185.6	ENST00000531894.5:ENST00000530079.5:ENST00000529089.1:ENST00000534700.6:ENST00000533264.5:ENST00000534580.5:ENST00000527016.1	lncRNA	lncRNA	lncRNA:transcribed_unprocessed_pseudogene	lncRNA:processed_transcript:transcribed_unprocessed_pseudogene	0	31	2	4.42713	4.52361	4.62009	0.0173083	0.00504155	0.104099	0.0646039
chr17	21009964	21010062	6742824	0	-	0.428571	(0.408,0.44]	chr17	662022	16	INTRON	INTRON	USP22	ENSG00000124422.12	ENST00000261497.9:ENST00000537526.6:ENST00000455117.6:ENST00000579645.5:ENST00000478443.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	31	2	4.42713	4.52361	4.62009	0.0173083	0.00504155	0.104099	0.0646039
chr2	227502296	227502396	1025960	0	+	0.43	(0.408,0.44]	chr2	109562	103	INTRON	INTRON	AGFG1	ENSG00000173744.18	ENST00000409979.6:ENST00000310078.13:ENST00000409315.5:ENST00000373671.7:ENST00000409171.5	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.42713	4.52361	4.62009	0.0173083	0.00504155	0.104099	0.0646039
chr20	49075820	49075920	7284093	0	+	0.42	(0.408,0.44]	chr20	740871	3	SS5_PROX	SS5_PROX:INTRON	CSE1L	ENSG00000124207.17	ENST00000396192.7:ENST00000262982.3	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.42713	4.52361	4.62009	0.0173083	0.00504155	0.104099	0.0646039
chr22	40347011	40347111	7519795	0	+	0.42	(0.408,0.44]	chr22	768238	3	SS5_PROX	SS5_PROX:INTRON	ADSL	ENSG00000239900.14	ENST00000623632.4:ENST00000679723.1:ENST00000623063.3:ENST00000637666.2:ENST00000680978.1:ENST00000625194.4:ENST00000681159.1:ENST00000342312.9:ENST00000636714.1:ENST00000680444.1:ENST00000480775.3:ENST00000624503.1:ENST00000466863.1:ENST00000637669.1:ENST00000216194.11:ENST00000675622.1:ENST00000679656.1:ENST00000636265.1:ENST00000623978.3:ENST00000477111.2:ENST00000623287.4:ENST00000679609.1:ENST00000624474.1:ENST00000680378.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	31	2	4.42713	4.52361	4.62009	0.0173083	0.00504155	0.104099	0.0646039
chr8	140595103	140595203	4076161	0	-	0.44	(0.408,0.44]	chr8	370281	94	INTRON	INTRON	AGO2	ENSG00000123908.12	ENST00000220592.10:ENST00000519980.5:ENST00000523609.5:ENST00000517293.5:ENST00000524328.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	31	2	4.42713	4.52361	4.62009	0.0173083	0.00504155	0.104099	0.0646039
chr17	39990897	39990997	6608495	0	+	0.35	(0.32,0.35]	chr17	643510	3	INTRON	INTRON	PSMD3	ENSG00000108344.15	ENST00000264639.9:ENST00000415039.7:ENST00000540504.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	70	2	3.53854	4.523535	5.50853	0.0010959399999999999	9.09596e-4	0.0304174	0.0277043
chr10	17658764	17658864	4399412	0	+	0.36	(0.35,0.378]	chr10	406150	140	INTRON	INTRON	STAM	ENSG00000136738.15	ENST00000377524.8:ENST00000377500.1:ENST00000445846.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	32	2	4.29839	4.5234950000000005	4.7486	0.0294717	0.00418965	0.128055	0.0591344
chr13	95084788	95084887	5637686	0	-	0.353535	(0.35,0.378]	chr13	537045	11	INTRON	INTRON	ABCC4	ENSG00000125257.16	ENST00000645237.2:ENST00000643051.1:ENST00000643842.1:ENST00000646439.1:ENST00000644880.1:ENST00000643816.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	32	2	4.29839	4.5234950000000005	4.7486	0.0294717	0.00418965	0.128055	0.0591344
chr17	57659230	57659329	6636803	0	+	0.363636	(0.35,0.378]	chr17	648119	31	INTRON	INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000675656.1:ENST00000442934.6:ENST00000579505.5:ENST00000675379.1:ENST00000675127.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	32	2	4.29839	4.5234950000000005	4.7486	0.0294717	0.00418965	0.128055	0.0591344
chr2	96193938	96194024	1179842	0	-	0.372093	(0.35,0.378]	chr2	126140	2	INTRON	INTRON	STARD7	ENSG00000084090.14	ENST00000337288.10:ENST00000462501.1:ENST00000443962.1:ENST00000495687.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	32	2	4.29839	4.5234950000000005	4.7486	0.0294717	0.00418965	0.128055	0.0591344
chr5	71559581	71559681	2384652	0	+	0.36	(0.35,0.378]	chr5	230055	2	SS3_PROX	SS3_PROX:INTRON	BDP1	ENSG00000145734.20	ENST00000358731.9:ENST00000514903.7:ENST00000525844.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	32	2	4.29839	4.5234950000000005	4.7486	0.0294717	0.00418965	0.128055	0.0591344
chr6	63659568	63659667	2883528	0	+	0.373737	(0.35,0.378]	chr6	273559	124	INTRON	INTRON	PHF3	ENSG00000118482.12	ENST00000262043.8:ENST00000506783.5:ENST00000481385.6:ENST00000515594.5:ENST00000494284.6:ENST00000509876.5:ENST00000509330.5:ENST00000393387.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	32	2	4.29839	4.5234950000000005	4.7486	0.0294717	0.00418965	0.128055	0.0591344
chr7	105858193	105858293	3607793	0	-	0.36	(0.35,0.378]	chr7	336411	691	INTRON	INTRON	ATXN7L1	ENSG00000146776.15	ENST00000419735.8:ENST00000318724.8:ENST00000478915.1:ENST00000481880.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	32	2	4.29839	4.5234950000000005	4.7486	0.0294717	0.00418965	0.128055	0.0591344
chr3	138805650	138805749	1831209	0	-	0.333333	(0.32,0.35]	chr3	184062	87	INTRON	INTRON	PIK3CB	ENSG00000051382.9	ENST00000674063.1:ENST00000477593.5:ENST00000462898.5:ENST00000483968.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	70	2	3.45772	4.5234749999999995	5.58923	0.00128487	8.12357e-4	0.0333518	0.0263656
chr10	110266423	110266523	4520310	0	+	0.41	(0.408,0.44]	chr10	416936	49	INTRON	INTRON	MXI1	ENSG00000119950.21	ENST00000332674.9:ENST00000453116.5:ENST00000361248.8:ENST00000239007.11:ENST00000460667.5:ENST00000393134.5:ENST00000651225.1:ENST00000652649.1:ENST00000651613.1:ENST00000652243.1:ENST00000651495.1:ENST00000652506.1:ENST00000650900.1:ENST00000651811.1:ENST00000651167.1:ENST00000651516.1:ENST00000651467.1:ENST00000651004.1:ENST00000650843.1:ENST00000651318.1:ENST00000650644.1:ENST00000650696.1:ENST00000652604.1:ENST00000651109.1:ENST00000652463.1:ENST00000651557.1:ENST00000650810.1:ENST00000650952.1:ENST00000484030.5:ENST00000652028.1:ENST00000651866.1:ENST00000651848.1:ENST00000442296.5:ENST00000652323.1:ENST00000369612.1:ENST00000650752.1:ENST00000651112.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	31	2	4.51604	4.52346	4.53088	0.0137419	0.00669275	0.0949306	0.0738715
chr11	47803836	47803936	4951700	0	-	0.41	(0.408,0.44]	chr11	464535	3	SS3_PROX	SS3_PROX:INTRON	NUP160	ENSG00000030066.14	ENST00000694866.1:ENST00000378460.7:ENST00000530326.5:ENST00000528071.5:ENST00000526569.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	31	2	4.51604	4.52346	4.53088	0.0137419	0.00669275	0.0949306	0.0738715
chr2	24816027	24816118	712321	0	+	0.428571	(0.408,0.44]	chr2	82378	4	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	CENPO	ENSG00000138092.11	ENST00000473706.5:ENST00000491031.5:ENST00000380834.7:ENST00000260662.2:ENST00000498362.1:ENST00000464156.5:ENST00000395845.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	31	2	4.51604	4.52346	4.53088	0.0137419	0.00669275	0.0949306	0.0738715
chr3	158117602	158117702	1538349	0	+	0.44	(0.408,0.44]	chr3	160248	66	INTRON	INTRON	RSRC1	ENSG00000174891.14	ENST00000480820.5:ENST00000494002.5:ENST00000295930.7:ENST00000471994.5:ENST00000683733.1:ENST00000682221.1:ENST00000683831.1:ENST00000683516.1:ENST00000482822.3:ENST00000476899.6:ENST00000464171.5:ENST00000611884.5:ENST00000682164.1:ENST00000684604.1:ENST00000683899.1:ENST00000682500.1:ENST00000684683.1:ENST00000684512.1:ENST00000683394.1:ENST00000684156.1:ENST00000312179.10:ENST00000475278.6:ENST00000480119.5:ENST00000468344.5:ENST00000471911.5:ENST00000683137.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	31	2	4.51604	4.52346	4.53088	0.0137419	0.00669275	0.0949306	0.0738715
chr6	34370866	34370966	3084556	0	-	0.42	(0.408,0.44]	chr6	288633	285	INTRON	INTRON	NUDT3:RPS10-NUDT3	ENSG00000272325.2:ENSG00000270800.3	ENST00000607016.2:ENST00000639725.1:ENST00000639877.1:ENST00000605528.2	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.51604	4.52346	4.53088	0.0137419	0.00669275	0.0949306	0.0738715
chr6	88240221	88240321	3153550	0	-	0.44	(0.408,0.44]	chr6	294127	614	INTRON	INTRON	ENSG00000234426	ENSG00000234426.3	ENST00000648572.1	lncRNA	lncRNA	lncRNA	lncRNA	0	31	2	4.51604	4.52346	4.53088	0.0137419	0.00669275	0.0949306	0.0738715
chr8	48033165	48033265	3752484	0	+	0.43	(0.408,0.44]	chr8	349044	242	INTRON	INTRON	UBE2V2	ENSG00000169139.12	ENST00000523432.5:ENST00000521346.5:ENST00000523111.7:ENST00000518360.5:ENST00000517630.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	31	2	4.51604	4.52346	4.53088	0.0137419	0.00669275	0.0949306	0.0738715
chr17	57284855	57284954	6633033	0	+	0.353535	(0.35,0.378]	chr17	648007	50	INTRON	INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000581776.5:ENST00000674961.1:ENST00000582453.5:ENST00000675656.1:ENST00000322684.7:ENST00000579590.5:ENST00000676073.1:ENST00000675822.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	32	2	4.40128	4.522925	4.64457	0.012652	0.0120289	0.0962115	0.0926667
chr17	59760581	59760681	6642928	0	+	0.36	(0.35,0.378]	chr17	648739	213	INTRON	INTRON	VMP1	ENSG00000062716.13	ENST00000593168.5:ENST00000586245.5:ENST00000585847.5:ENST00000262291.9:ENST00000587945.1:ENST00000589823.6:ENST00000592619.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	32	2	4.40128	4.522925	4.64457	0.012652	0.0120289	0.0962115	0.0926667
chr2	151419291	151419390	893302	0	+	0.363636	(0.35,0.378]	chr2	98894	20	INTRON	INTRON	RIF1	ENSG00000080345.18	ENST00000453091.6:ENST00000428287.6:ENST00000494333.1:ENST00000444746.7:ENST00000243326.9:ENST00000414861.6:ENST00000430328.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	32	2	4.40128	4.522925	4.64457	0.012652	0.0120289	0.0962115	0.0926667
chr16	2077250	2077326	6277227	0	+	0.631579	(0.57,1]	chr16	600091	3	SS3_PROX	SS3_PROX:INTRON	TSC2	ENSG00000103197.18	ENST00000643946.1:ENST00000643088.1:ENST00000382538.10:ENST00000219476.9:ENST00000642936.1:ENST00000401874.7:ENST00000644335.1:ENST00000646388.1:ENST00000439673.6:ENST00000350773.9:ENST00000439117.6:ENST00000644329.1:ENST00000642797.1:ENST00000644043.1:ENST00000642561.1:ENST00000568454.6:ENST00000644399.1:ENST00000646634.1:ENST00000642365.1:ENST00000645024.1:ENST00000483020.5:ENST00000471143.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	24	2	4.37136	4.522895	4.67443	0.00345135	8.07515e-4	0.0517761	0.0258804
chr5	37371041	37371106	2602771	0	-	0.661538	(0.57,1]	chr5	247534	2	UTR5	UTR5:EXON_MRNA	NUP155	ENSG00000113569.16	ENST00000231498.8:ENST00000513532.1:ENST00000507675.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	24	2	4.37136	4.522895	4.67443	0.00345135	8.07515e-4	0.0517761	0.0258804
chr8	140626843	140626943	4076479	0	-	0.59	(0.57,1]	chr8	370287	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	AGO2	ENSG00000123908.12	ENST00000220592.10:ENST00000519980.5:ENST00000523609.5:ENST00000517293.5:ENST00000518019.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	24	2	4.37136	4.522895	4.67443	0.00345135	8.07515e-4	0.0517761	0.0258804
chr22	38355998	38356098	7587406	0	-	0.49	(0.476,0.515]	chr22	776655	46	INTRON	INTRON	TPTEP2	ENSG00000244627.5	ENST00000428294.5:ENST00000407491.6:ENST00000443042.5:ENST00000457665.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	31	2	4.34648	4.52283	4.69918	0.0193566	0.00400966	0.108861	0.057767
chr6	37839505	37839605	2857230	0	+	0.5	(0.476,0.515]	chr6	270225	191	INTRON	INTRON	ZFAND3	ENSG00000156639.12	ENST00000287218.9:ENST00000373391.6:ENST00000474522.5	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.34648	4.52283	4.69918	0.0193566	0.00400966	0.108861	0.057767
chr20	32848171	32848271	7257454	0	+	0.47	(0.44,0.476]	chr20	737282	1	SS3_PROX	SS3_PROX:INTRON	MAPRE1	ENSG00000101367.9	ENST00000375571.6	protein_coding	protein_coding	protein_coding	protein_coding	1	69	2	3.17572	4.522815	5.86991	0.00427037	2.27008e-5	0.0573912	0.00372337
chr2	61219612	61219710	1127956	0	-	0.428571	(0.408,0.44]	chr2	121157	46	INTRON	INTRON	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000411912.5:ENST00000463046.5:ENST00000476716.5:ENST00000472689.5:ENST00000472706.5:ENST00000490527.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	69	2	3.28852	4.522785	5.75705	0.00287185	4.13252e-5	0.0474836	0.00519938
chr2	171556186	171556283	917671	0	+	0.43299	(0.408,0.44]	chr2	101061	15	UTR3	UTR3:EXON_MRNA	CYBRD1	ENSG00000071967.12	ENST00000321348.9:ENST00000375252.3	protein_coding	protein_coding	protein_coding	protein_coding	1	69	2	3.41144	4.52269	5.63394	0.00178336	7.78928e-5	0.0379201	0.00735438
chr2	44478659	44478759	766508	0	+	0.37	(0.35,0.378]	chr2	86780	215	INTRON	INTRON	CAMKMT	ENSG00000143919.15	ENST00000378494.8:ENST00000402247.5:ENST00000407131.5:ENST00000428993.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	35	2	3.94291	4.522585	5.10226	0.0374229	0.00327038	0.155878	0.0508595
chr11	783029	783129	4720587	0	+	0.49	(0.476,0.515]	chr11	436447	1	SS3_PROX	SS3_PROX:INTRON	ENSG00000255284	ENSG00000255284.3	ENST00000530083.2:ENST00000525941.1	lncRNA	lncRNA	lncRNA	lncRNA	0	31	2	4.43093	4.522475	4.61402	0.00947755	0.00931369	0.0855292	0.0817766
chr12	8083665	8083763	5071584	0	+	0.479592	(0.476,0.515]	chr12	479474	3	INTRON	INTRON	NECAP1	ENSG00000089818.18	ENST00000639955.1:ENST00000640648.1:ENST00000546181.2:ENST00000542095.6:ENST00000638237.1:ENST00000450991.6:ENST00000639276.1:ENST00000639038.1:ENST00000639595.1:ENST00000339754.11:ENST00000639071.1:ENST00000640209.1:ENST00000640099.1:ENST00000544891.6:ENST00000537796.2:ENST00000639167.1:ENST00000639811.1:ENST00000638787.1:ENST00000541948.2:ENST00000638883.1:ENST00000640481.1:ENST00000545807.6:ENST00000540083.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	31	2	4.43093	4.522475	4.61402	0.00947755	0.00931369	0.0855292	0.0817766
chr15	64206423	64206520	6203318	0	-	0.484536	(0.476,0.515]	chr15	591701	11	INTRON	INTRON	CSNK1G1:ENSG00000259316	ENSG00000169118.18:ENSG00000259316.12	ENST00000303052.13:ENST00000607537.6:ENST00000561349.6:ENST00000635142.1:ENST00000634654.1:ENST00000634811.1:ENST00000606225.1:ENST00000606793.3:ENST00000634251.1:ENST00000634847.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	31	2	4.43093	4.522475	4.61402	0.00947755	0.00931369	0.0855292	0.0817766
chr2	38855939	38856039	1100494	0	-	0.51	(0.476,0.515]	chr2	118118	2	SS5_PROX	SS5_PROX:INTRON	DHX57	ENSG00000163214.21	ENST00000457308.6:ENST00000622155.4:ENST00000620517.4:ENST00000474104.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	31	2	4.43093	4.522475	4.61402	0.00947755	0.00931369	0.0855292	0.0817766
chr5	131312979	131313079	2485126	0	+	0.48	(0.476,0.515]	chr5	237114	485	INTRON	INTRON	CDC42SE2	ENSG00000158985.14	ENST00000502840.5:ENST00000511432.5:ENST00000506419.5:ENST00000395246.5:ENST00000505065.2:ENST00000504701.5:ENST00000503291.5:ENST00000360515.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	31	2	4.43093	4.522475	4.61402	0.00947755	0.00931369	0.0855292	0.0817766
chr6	2961694	2961793	3047630	0	-	0.50505	(0.476,0.515]	chr6	283585	2	SS5_PROX	SS5_PROX:INTRON	SERPINB6	ENSG00000124570.21	ENST00000643098.1:ENST00000380546.7:ENST00000380539.7:ENST00000380529.5:ENST00000380524.5:ENST00000649845.1:ENST00000644178.1:ENST00000612421.3:ENST00000616722.4:ENST00000642543.1:ENST00000644388.1:ENST00000380520.6:ENST00000645580.1:ENST00000644693.1:ENST00000644828.1:ENST00000646775.1:ENST00000645421.1:ENST00000643227.1:ENST00000646688.1:ENST00000644777.1:ENST00000644875.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	31	2	4.43093	4.522475	4.61402	0.00947755	0.00931369	0.0855292	0.0817766
chr7	74712099	74712197	3335800	0	+	0.510204	(0.476,0.515]	chr7	310391	6	INTRON	INTRON	GTF2I	ENSG00000263001.8	ENST00000650807.1:ENST00000690345.1:ENST00000573035.6:ENST00000614986.4:ENST00000620879.4:ENST00000621734.4:ENST00000443166.5:ENST00000490431.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	31	2	4.43093	4.522475	4.61402	0.00947755	0.00931369	0.0855292	0.0817766
chrX	2354784	2354884	7744151	0	-	0.48	(0.476,0.515]	chrX	792947	164	INTRON	INTRON	DHRSX	ENSG00000169084.15	ENST00000334651.11:ENST00000412516.7:ENST00000444280.6:ENST00000441131.7:ENST00000478825.7:ENST00000430536.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	31	2	4.43093	4.522475	4.61402	0.00947755	0.00931369	0.0855292	0.0817766
chr11	62873638	62873736	4799505	0	+	0.459184	(0.44,0.476]	chr11	444793	16	INTRON	INTRON	SLC3A2	ENSG00000168003.18	ENST00000680729.1:ENST00000680002.1:ENST00000681467.1:ENST00000377890.6:ENST00000538084.2:ENST00000681569.1:ENST00000680725.1:ENST00000377891.6:ENST00000377889.6:ENST00000681215.1:ENST00000535296.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	31	2	4.33899	4.5212699999999995	4.70355	0.0206616	0.00383786	0.110999	0.0562562
chr6	88904414	88904514	3158544	0	-	0.47	(0.44,0.476]	chr6	294228	3	SS5_PROX	SS5_PROX:INTRON	RNGTT	ENSG00000111880.16	ENST00000369485.9:ENST00000369475.7:ENST00000627296.1:ENST00000538899.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	31	2	4.33899	4.5212699999999995	4.70355	0.0206616	0.00383786	0.110999	0.0562562
chr7	140333052	140333152	3660607	0	-	0.46	(0.44,0.476]	chr7	339772	352	INTRON	INTRON	SLC37A3	ENSG00000157800.18	ENST00000477571.5	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	0	31	2	4.33899	4.5212699999999995	4.70355	0.0206616	0.00383786	0.110999	0.0562562
chr9	129050263	129050363	4208651	0	+	0.47	(0.44,0.476]	chr9	385497	3	SS5_PROX	SS5_PROX:INTRON	MIGA2	ENSG00000148343.19	ENST00000684074.1:ENST00000439290.5:ENST00000445183.5:ENST00000358369.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	31	2	4.33899	4.5212699999999995	4.70355	0.0206616	0.00383786	0.110999	0.0562562
chr12	118017589	118017689	5234112	0	+	0.25	[0,0.28]	chr12	496494	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	RFC5	ENSG00000111445.14	ENST00000449641.6:ENST00000537315.5:ENST00000454402.7:ENST00000420967.5:ENST00000484086.6:ENST00000392542.6:ENST00000535092.1	protein_coding	protein_coding	protein_coding	protein_coding	2	119	2	2.86095	4.520955	6.18096	0.00369266	4.96998e-5	0.0535094	0.00577648
chr1	85196651	85196751	497186	0	-	0.31	(0.28,0.32]	chr1	58937	55	INTRON	INTRON	SYDE2	ENSG00000097096.10	ENST00000696556.1:ENST00000341460.6:ENST00000234668.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	34	2	4.14214	4.52088	4.89962	0.0579756	0.00425206	0.167723	0.0595557
chr10	67966383	67966482	4636833	0	-	0.282828	(0.28,0.32]	chr10	426344	17	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	HERC4	ENSG00000148634.16	ENST00000277817.10:ENST00000373700.9:ENST00000412272.6:ENST00000395198.7:ENST00000473533.6:ENST00000427635.6:ENST00000460168.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	34	2	4.14214	4.52088	4.89962	0.0579756	0.00425206	0.167723	0.0595557
chr12	42340930	42341029	5118367	0	+	0.30303	(0.28,0.32]	chr12	482920	46	INTRON	INTRON	PPHLN1	ENSG00000134283.18	ENST00000549190.5:ENST00000337898.10:ENST00000395580.7:ENST00000610488.4:ENST00000619544.4:ENST00000613154.4:ENST00000549774.5:ENST00000551723.5:ENST00000552429.5:ENST00000395568.6:ENST00000256678.12:ENST00000358314.12:ENST00000449194.6:ENST00000552761.5:ENST00000551406.5:ENST00000317560.13:ENST00000432191.6:ENST00000552202.5:ENST00000550535.5:ENST00000546750.5:ENST00000547847.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	34	2	4.14214	4.52088	4.89962	0.0579756	0.00425206	0.167723	0.0595557
chr12	42354180	42354276	5118505	0	+	0.3125	(0.28,0.32]	chr12	482939	18	INTRON	INTRON	PPHLN1	ENSG00000134283.18	ENST00000549190.5:ENST00000337898.10:ENST00000395580.7:ENST00000610488.4:ENST00000619544.4:ENST00000613154.4:ENST00000549774.5:ENST00000551723.5:ENST00000552429.5:ENST00000395568.6:ENST00000256678.12:ENST00000358314.12:ENST00000449194.6:ENST00000552761.5:ENST00000551406.5:ENST00000317560.13:ENST00000432191.6:ENST00000552202.5:ENST00000550535.5:ENST00000546750.5:ENST00000547847.1:ENST00000552794.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	34	2	4.14214	4.52088	4.89962	0.0579756	0.00425206	0.167723	0.0595557
chr14	100357858	100357958	5968710	0	-	0.31	(0.28,0.32]	chr14	567084	29	INTRON	INTRON	WARS1	ENSG00000140105.18	ENST00000392882.7:ENST00000358655.8:ENST00000355338.6:ENST00000344102.9:ENST00000557135.5:ENST00000556645.5:ENST00000553395.5:ENST00000556504.5:ENST00000554084.5:ENST00000557722.5:ENST00000557297.5:ENST00000556435.5:ENST00000553808.5:ENST00000554331.5:ENST00000555063.5:ENST00000556338.5:ENST00000557239.5:ENST00000556698.5:ENST00000553524.5:ENST00000555410.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	34	2	4.14214	4.52088	4.89962	0.0579756	0.00425206	0.167723	0.0595557
chr15	83482262	83482362	6082329	0	+	0.31	(0.28,0.32]	chr15	579031	343	INTRON	INTRON	SH3GL3	ENSG00000140600.17	ENST00000492099.1:ENST00000427482.7:ENST00000563901.5:ENST00000324537.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	34	2	4.14214	4.52088	4.89962	0.0579756	0.00425206	0.167723	0.0595557
chr2	169961806	169961905	909510	0	+	0.292929	(0.28,0.32]	chr2	100350	29	INTRON	INTRON	UBR3	ENSG00000144357.18	ENST00000272793.11:ENST00000430321.5:ENST00000392632.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	34	2	4.14214	4.52088	4.89962	0.0579756	0.00425206	0.167723	0.0595557
chr10	12152047	12152146	4394166	0	+	0.454545	(0.44,0.476]	chr10	405371	17	INTRON	INTRON	SEC61A2	ENSG00000065665.21	ENST00000379051.5:ENST00000379033.7:ENST00000441368.5:ENST00000298428.14:ENST00000475268.5:ENST00000495368.1:ENST00000304267.12:ENST00000472221.5:ENST00000379020.8:ENST00000379017.7:ENST00000418772.1:ENST00000419021.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	31	2	4.43525	4.52086	4.60647	0.0102339	0.00897296	0.0850389	0.0849778
chr11	66755257	66755356	4811448	0	+	0.474747	(0.44,0.476]	chr11	447936	64	INTRON	INTRON	C11orf80	ENSG00000173715.18	ENST00000534325.5:ENST00000524551.5:ENST00000525908.6:ENST00000540737.7:ENST00000527634.5:ENST00000527368.5:ENST00000531400.6:ENST00000642265.1:ENST00000532565.6:ENST00000525449.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	31	2	4.43525	4.52086	4.60647	0.0102339	0.00897296	0.0850389	0.0849778
chr14	103470600	103470700	5826511	0	+	0.47	(0.44,0.476]	chr14	552901	14	INTRON	INTRON	MARK3	ENSG00000075413.19	ENST00000678179.1:ENST00000676838.1:ENST00000677348.1:ENST00000677404.1:ENST00000676694.1:ENST00000676938.1:ENST00000678619.1:ENST00000676897.1:ENST00000677214.1:ENST00000677942.1:ENST00000676830.1:ENST00000678999.1:ENST00000677228.1:ENST00000556744.2:ENST00000677104.1:ENST00000679330.1:ENST00000560417.6:ENST00000440884.7:ENST00000676475.1:ENST00000677035.1:ENST00000678022.1:ENST00000677560.1:ENST00000561314.6:ENST00000429436.7:ENST00000677118.1:ENST00000676564.1:ENST00000678169.1:ENST00000678175.1:ENST00000678897.1:ENST00000678278.1:ENST00000676645.1:ENST00000677829.1:ENST00000678302.1:ENST00000677133.1:ENST00000678207.1:ENST00000677360.1:ENST00000676905.1:ENST00000678343.1:ENST00000677347.1:ENST00000678071.1:ENST00000677432.1:ENST00000678237.1:ENST00000677604.1:ENST00000676518.1:ENST00000677051.1:ENST00000677857.1:ENST00000677869.1:ENST00000416682.6:ENST00000303622.13:ENST00000216288.11:ENST00000679105.1:ENST00000553942.5:ENST00000335102.9:ENST00000678091.1:ENST00000561071.5:ENST00000676745.1:ENST00000554627.5:ENST00000559274.1:ENST00000677410.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	31	2	4.43525	4.52086	4.60647	0.0102339	0.00897296	0.0850389	0.0849778
chr17	37041479	37041578	6603449	0	+	0.464646	(0.44,0.476]	chr17	642721	73	INTRON	INTRON	AATF	ENSG00000275700.6	ENST00000680340.1:ENST00000680356.1:ENST00000616434.2:ENST00000680579.1:ENST00000681800.1:ENST00000680330.1:ENST00000619387.5:ENST00000679997.1:ENST00000681062.1:ENST00000679881.1:ENST00000680782.1:ENST00000679600.1:ENST00000616392.1:ENST00000617141.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	31	2	4.43525	4.52086	4.60647	0.0102339	0.00897296	0.0850389	0.0849778
chr19	41903067	41903136	7072163	0	+	0.463768	(0.44,0.476]	chr19	707010	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ARHGEF1	ENSG00000076928.18	ENST00000600274.5:ENST00000354532.8:ENST00000599846.5:ENST00000347545.8:ENST00000378152.8:ENST00000337665.8:ENST00000599589.5:ENST00000595897.5:ENST00000594044.1:ENST00000595723.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	31	2	4.43525	4.52086	4.60647	0.0102339	0.00897296	0.0850389	0.0849778
chr9	133240387	133240487	4369673	0	-	0.45	(0.44,0.476]	chr9	402030	64	INTRON	INTRON	ABO	ENSG00000175164.16	ENST00000679909.1	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.43525	4.52086	4.60647	0.0102339	0.00897296	0.0850389	0.0849778
chr2	169626386	169626485	906903	0	+	0.474747	(0.44,0.476]	chr2	100061	113	INTRON	INTRON	PPIG	ENSG00000138398.17	ENST00000678088.1:ENST00000677392.1:ENST00000433207.6:ENST00000679324.1:ENST00000414307.6:ENST00000676508.1:ENST00000260970.8:ENST00000678695.1:ENST00000409714.7:ENST00000530152.5:ENST00000677750.1:ENST00000678721.1:ENST00000462903.6:ENST00000676756.1:ENST00000679107.1:ENST00000678499.1:ENST00000678638.1:ENST00000448752.7:ENST00000417938.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	64	2	3.55068	4.520825	5.49097	7.06861e-4	4.8612e-4	0.0241881	0.0203841
chr11	65660989	65661087	4967137	0	-	0.438776	(0.408,0.44]	chr11	468181	3	INTRON	INTRON	RELA	ENSG00000173039.20	ENST00000612991.4:ENST00000406246.8:ENST00000525693.5:ENST00000308639.13:ENST00000526283.6:ENST00000531484.5:ENST00000532999.5:ENST00000529389.5:ENST00000525658.5:ENST00000533546.5:ENST00000527909.5:ENST00000534558.5:ENST00000527749.5:ENST00000532879.5:ENST00000531238.1:ENST00000527074.5:ENST00000525301.5:ENST00000533187.5:ENST00000527874.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	142	2	2.48667	4.5205649999999995	6.55446	3.18514e-4	2.84839e-6	0.0159645	0.0011973
chr11	68489273	68489373	4817618	0	+	0.26	[0,0.28]	chr11	448907	281	INTRON	INTRON	PPP6R3	ENSG00000110075.15	ENST00000530427.5:ENST00000528635.5:ENST00000529907.5:ENST00000533127.5:ENST00000534534.5:ENST00000529344.5:ENST00000524845.5:ENST00000393800.7:ENST00000265637.8:ENST00000524904.5:ENST00000393801.7:ENST00000265636.9:ENST00000529710.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	89	2	2.86008	4.520519999999999	6.18096	0.0177015	4.96998e-5	0.105304	0.00577648
chr19	36467023	36467123	7174089	0	-	0.43	(0.408,0.44]	chr19	725000	101	INTRON	INTRON	ZNF566	ENSG00000186017.16	ENST00000493391.6:ENST00000392170.7:ENST00000452939.7:ENST00000427002.2:ENST00000424129.7:ENST00000434377.6:ENST00000472909.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	69	2	3.2451	4.520474999999999	5.79585	0.00337792	3.36399e-5	0.0516884	0.00463632
chr17	29414893	29414993	6585881	0	+	0.38	(0.378,0.408]	chr17	640377	109	INTRON	INTRON	TAOK1	ENSG00000160551.12	ENST00000261716.8:ENST00000583121.5:ENST00000587277.1:ENST00000536202.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	87	2	3.15415	4.520195	5.88624	4.11608e-4	1.19481e-4	0.0181365	0.00988798
chrX	101049251	101049351	7855256	0	-	0.47	(0.44,0.476]	chrX	800835	52	INTRON	INTRON	TRMT2B:TRMT2B-AS1	ENSG00000188917.15:ENSG00000225839.2	ENST00000545398.5:ENST00000372936.4:ENST00000372939.5:ENST00000372935.5:ENST00000478422.1:ENST00000443801.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA:processed_transcript	1	64	2	3.59417	4.520185	5.4462	5.83686e-4	5.78231e-4	0.0223753	0.0218253
chr15	65784933	65785032	6209723	0	-	0.454545	(0.44,0.476]	chr15	592617	177	INTRON	INTRON	DENND4A	ENSG00000174485.16	ENST00000443035.8:ENST00000431932.6:ENST00000564674.5:ENST00000568515.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	64	2	3.50584	4.5201150000000005	5.53439	8.66138e-4	4.05863e-4	0.0266729	0.0185763
chr6	17681536	17681635	3065959	0	-	0.434343	(0.408,0.44]	chr6	284866	54	INTRON	INTRON	NUP153	ENSG00000124789.12	ENST00000613258.4:ENST00000537253.5:ENST00000262077.3	protein_coding	protein_coding	protein_coding	protein_coding	3	103	2	2.7371	4.5199750000000005	6.30285	7.83328e-4	1.14977e-5	0.0257505	0.00268333
chr1	227049697	227049796	649005	0	-	0.373737	(0.35,0.378]	chr1	76972	13	INTRON	INTRON	CDC42BPA	ENSG00000143776.20	ENST00000366766.8:ENST00000366769.7:ENST00000334218.9:ENST00000366767.7:ENST00000448940.5:ENST00000442054.5:ENST00000366764.8:ENST00000441725.1	protein_coding	protein_coding	protein_coding	protein_coding	1	75	2	3.67306	4.519895	5.3667299999999996	7.05001e-4	3.99274e-4	0.024224	0.0179401
chr3	9383560	9383635	1358845	0	+	0.306667	(0.28,0.32]	chr3	142640	3	SS5_PROX	SS5_PROX:INTRON	THUMPD3	ENSG00000134077.16	ENST00000345094.7:ENST00000452837.7:ENST00000515662.6:ENST00000416603.1:ENST00000484006.1:ENST00000464045.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	34	2	4.23719	4.51987	4.80255	0.0264147	0.0137406	0.133676	0.0949306
chr2	32445768	32445868	731686	0	+	0.26	[0,0.28]	chr2	84386	1	SS5_PROX	SS5_PROX:INTRON	BIRC6	ENSG00000115760.15	ENST00000421745.7:ENST00000648282.1:ENST00000483194.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	79	2	3.3753	4.519515	5.66373	0.00242466	0.00196371	0.0454587	0.0401678
chr4	2548054	2548154	1912630	0	+	0.44	(0.408,0.44]	chr4	191976	105	INTRON	INTRON	RNF4:FAM193A	ENSG00000063978.16:ENSG00000125386.16	ENST00000508235.1:ENST00000637812.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	87	2	3.42828	4.51948	5.61068	3.21002e-4	9.1223e-5	0.0165409	0.00798362
chr1	8750135	8750234	373108	0	-	0.333333	(0.32,0.35]	chr1	43545	471	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000656437.1:ENST00000659924.1:ENST00000480342.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	76	2	3.38612	4.51917	5.65222	0.00249604	1.55757e-4	0.0446195	0.0106835
chr1	113810610	113810710	525930	0	-	0.35	(0.32,0.35]	chr1	61864	122	INTRON	INTRON	RSBN1	ENSG00000081019.14	ENST00000261441.9:ENST00000612242.4:ENST00000476412.5:ENST00000615321.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	33	2	4.17181	4.519015	4.86622	0.04531	0.00354075	0.149888	0.0546236
chr1	205114188	205114288	622353	0	-	0.34	(0.32,0.35]	chr1	74008	87	INTRON	INTRON	RBBP5	ENSG00000117222.14	ENST00000367164.1:ENST00000264515.11:ENST00000484379.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	33	2	4.17181	4.519015	4.86622	0.04531	0.00354075	0.149888	0.0546236
chr1	247208618	247208717	684085	0	-	0.333333	(0.32,0.35]	chr1	80202	62	INTRON	INTRON	ZNF731P	ENSG00000227671.4	ENST00000421406.1:ENST00000606173.1:ENST00000606454.1:ENST00000606212.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	33	2	4.17181	4.519015	4.86622	0.04531	0.00354075	0.149888	0.0546236
chr16	75320427	75320527	6528157	0	-	0.33	(0.32,0.35]	chr16	632300	140	INTRON	INTRON	CFDP1	ENSG00000153774.9	ENST00000283882.4:ENST00000564793.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	33	2	4.17181	4.519015	4.86622	0.04531	0.00354075	0.149888	0.0546236
chr21	6493905	6494004	7425416	0	-	0.343434	(0.32,0.35]	chr21	757479	9	EXON_MRNA	EXON_MRNA:INTRON	ENSG00000275895	ENSG00000275895.7	ENST00000610664.5:ENST00000623375.3:ENST00000639996.1:ENST00000620065.4:ENST00000624739.1:ENST00000619610.2:ENST00000636315.1:ENST00000637031.1:ENST00000636177.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	33	2	4.17181	4.519015	4.86622	0.04531	0.00354075	0.149888	0.0546236
chr4	145093792	145093891	2254717	0	-	0.323232	(0.32,0.35]	chr4	220117	117	INTRON	INTRON	ANAPC10	ENSG00000164162.14	ENST00000641499.1:ENST00000506851.5:ENST00000613466.4:ENST00000507656.6:ENST00000502651.5:ENST00000309439.9:ENST00000451299.6:ENST00000510270.5:ENST00000511466.5:ENST00000514390.5:ENST00000513054.5:ENST00000502562.5:ENST00000512680.5:ENST00000508087.5:ENST00000504721.5:ENST00000514704.5:ENST00000507134.5:ENST00000502847.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	33	2	4.17181	4.519015	4.86622	0.04531	0.00354075	0.149888	0.0546236
chr16	58573908	58574008	6495803	0	-	0.43	(0.408,0.44]	chr16	628558	132	INTRON	INTRON	CNOT1	ENSG00000125107.19	ENST00000317147.10:ENST00000569240.5:ENST00000567188.5:ENST00000441024.6:ENST00000569882.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	31	2	4.33238	4.5182400000000005	4.7041	0.0218901	0.00381677	0.11491	0.0562562
chr22	19887970	19888069	7555768	0	-	0.424242	(0.408,0.44]	chr22	772493	36	INTRON	INTRON	TXNRD2	ENSG00000184470.21	ENST00000400518.5:ENST00000542719.6:ENST00000494454.5:ENST00000474308.5:ENST00000400525.6:ENST00000400521.7:ENST00000400519.6:ENST00000634537.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:non_stop_decay:nonsense_mediated_decay	0	31	2	4.33238	4.5182400000000005	4.7041	0.0218901	0.00381677	0.11491	0.0562562
chr8	127739519	127739613	3860002	0	+	0.425532	(0.408,0.44]	chr8	355366	1	INTRON	INTRON	MYC	ENSG00000136997.21	ENST00000259523.10:ENST00000651626.1:ENST00000377970.6:ENST00000524013.2:ENST00000621592.8:ENST00000652288.1	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.33238	4.5182400000000005	4.7041	0.0218901	0.00381677	0.11491	0.0562562
chr20	49285875	49285974	7284680	0	+	0.414141	(0.408,0.44]	chr20	741065	37	INTRON	INTRON	ZFAS1	ENSG00000177410.13	ENST00000371743.8:ENST00000417721.5:ENST00000441722.5:ENST00000450535.5:ENST00000458653.5:ENST00000428008.6:ENST00000620594.2:ENST00000652916.1:ENST00000326677.9:ENST00000659056.1	lncRNA	lncRNA	lncRNA	lncRNA	1	71	2	2.89193	4.51823	6.14453	0.00950364	2.6318e-5	0.0863579	0.00424204
chr1	180774359	180774459	271020	0	+	0.38	(0.378,0.408]	chr1	31620	916	INTRON	INTRON	XPR1	ENSG00000143324.14	ENST00000367590.9:ENST00000367589.3	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.09379	4.5181450000000005	4.9425	0.023912	0.00452675	0.129075	0.0595107
chr10	5899251	5899350	4385271	0	+	0.30303	(0.28,0.32]	chr10	404631	37	INTRON	INTRON	FBH1	ENSG00000134452.20	ENST00000397269.7:ENST00000362091.9:ENST00000470089.5:ENST00000462507.1:ENST00000379999.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	80	2	3.16101	4.51813	5.87525	0.0061861	8.91612e-5	0.0677395	0.00793468
chr1	84481212	84481312	150613	0	+	0.35	(0.32,0.35]	chr1	16714	2	SS5_PROX	SS5_PROX:INTRON	RPF1	ENSG00000117133.11	ENST00000370656.5:ENST00000370654.6	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.27113	4.51807	4.76501	0.0199982	0.0114287	0.120668	0.0886611
chr10	63221182	63221282	4632939	0	-	0.33	(0.32,0.35]	chr10	426215	8	INTRON	INTRON	JMJD1C	ENSG00000171988.20	ENST00000399262.7:ENST00000402544.5:ENST00000542921.5:ENST00000469152.5:ENST00000489372.4:ENST00000633035.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	33	2	4.27113	4.51807	4.76501	0.0199982	0.0114287	0.120668	0.0886611
chr14	96556713	96556813	5810741	0	+	0.34	(0.32,0.35]	chr14	550972	3	SS5_PROX	SS5_PROX:INTRON	PAPOLA	ENSG00000090060.19	ENST00000216277.13:ENST00000553689.5:ENST00000392990.6:ENST00000555626.5:ENST00000556459.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	33	2	4.27113	4.51807	4.76501	0.0199982	0.0114287	0.120668	0.0886611
chr18	13729238	13729337	6877994	0	+	0.333333	(0.32,0.35]	chr18	681600	20	INTRON	INTRON	RNMT	ENSG00000101654.18	ENST00000543302.6:ENST00000588457.5:ENST00000383314.7:ENST00000592764.5:ENST00000591746.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	33	2	4.27113	4.51807	4.76501	0.0199982	0.0114287	0.120668	0.0886611
chr2	151473063	151473163	893872	0	+	0.33	(0.32,0.35]	chr2	99048	28	INTRON	INTRON	RIF1	ENSG00000080345.18	ENST00000453091.6:ENST00000428287.6:ENST00000444746.7:ENST00000243326.9:ENST00000430328.6:ENST00000454583.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	33	2	4.27113	4.51807	4.76501	0.0199982	0.0114287	0.120668	0.0886611
chr6	157402555	157402655	3011756	0	+	0.34	(0.32,0.35]	chr6	281268	199	INTRON	INTRON	ZDHHC14	ENSG00000175048.17	ENST00000414563.6:ENST00000359775.10	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.27113	4.51807	4.76501	0.0199982	0.0114287	0.120668	0.0886611
chr8	47959211	47959309	3945756	0	-	0.336735	(0.32,0.35]	chr8	361981	2	UTR5	UTR5:EXON_MRNA:INTRON	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7:ENST00000540819.1	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.27113	4.51807	4.76501	0.0199982	0.0114287	0.120668	0.0886611
chr12	113174439	113174539	5418092	0	-	0.46	(0.44,0.476]	chr12	517763	4	SS5_PROX	SS5_PROX:INTRON	DDX54	ENSG00000123064.13	ENST00000306014.10:ENST00000314045.11	protein_coding	protein_coding	protein_coding	protein_coding	1	64	2	3.45957	4.51806	5.57655	0.00106385	3.3967e-4	0.0300133	0.0170719
chr19	11037587	11037685	7016372	0	+	0.397959	(0.378,0.408]	chr19	697349	21	INTRON	INTRON	SMARCA4	ENSG00000127616.20	ENST00000644737.1:ENST00000642726.1:ENST00000646484.1:ENST00000643549.1:ENST00000643296.1:ENST00000647230.1:ENST00000642628.1:ENST00000646510.1:ENST00000429416.8:ENST00000344626.10:ENST00000646693.2:ENST00000645460.1:ENST00000541122.6:ENST00000589677.5:ENST00000444061.8:ENST00000590574.6:ENST00000643995.1:ENST00000644327.1:ENST00000644065.1:ENST00000644963.1:ENST00000643208.1:ENST00000645061.1:ENST00000642350.1:ENST00000647268.1:ENST00000643857.1:ENST00000644267.1:ENST00000646183.1:ENST00000646746.1:ENST00000643534.1:ENST00000646593.1:ENST00000645648.1:ENST00000592604.6:ENST00000591595.5:ENST00000646236.1:ENST00000585799.5:ENST00000642508.1:ENST00000645236.1:ENST00000538456.4:ENST00000586985.2:ENST00000592158.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	87	2	3.05389	4.517915	5.98194	6.75567e-4	7.66211e-5	0.0236067	0.00781006
chr2	26786796	26786894	715755	0	+	0.561224	(0.515,0.57]	chr2	82664	1	INTRON	INTRON	CENPA	ENSG00000115163.15	ENST00000475662.5:ENST00000472719.5:ENST00000335756.9:ENST00000233505.12:ENST00000419525.5:ENST00000460030.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	78	2	3.34008	4.517915	5.69575	1.23135e-4	7.34886e-5	0.00949625	0.00767614
chr17	44149527	44149620	6615547	0	+	0.430108	(0.408,0.44]	chr17	645086	1	INTRON	INTRON	HROB	ENSG00000125319.15	ENST00000319977.8:ENST00000585683.6:ENST00000245382.6:ENST00000588434.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	31	2	4.4358	4.517795	4.59979	0.0109537	0.00893097	0.0873034	0.0849778
chr21	6335901	6336001	7364934	0	+	0.42	(0.408,0.44]	chr21	751669	59	INTRON	INTRON	ENSG00000278903	ENSG00000278903.4	ENST00000688458.1:ENST00000689306.1:ENST00000624576.3:ENST00000623738.3:ENST00000692237.1:ENST00000624165.1	lncRNA	lncRNA	lncRNA	lncRNA	0	31	2	4.4358	4.517795	4.59979	0.0109537	0.00893097	0.0873034	0.0849778
chr3	183979348	183979447	1882226	0	-	0.424242	(0.408,0.44]	chr3	188174	3	INTRON	INTRON	ABCC5	ENSG00000114770.17	ENST00000334444.11:ENST00000265586.10:ENST00000437205.5:ENST00000492216.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	31	2	4.4358	4.517795	4.59979	0.0109537	0.00893097	0.0873034	0.0849778
chr6	36446002	36446101	2853944	0	+	0.434343	(0.408,0.44]	chr6	269700	21	INTRON	INTRON	KCTD20	ENSG00000112078.14	ENST00000536244.5:ENST00000373731.7:ENST00000483557.5:ENST00000474988.5:ENST00000498267.5:ENST00000481911.5:ENST00000449081.6:ENST00000265344.8:ENST00000460983.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	31	2	4.4358	4.517795	4.59979	0.0109537	0.00893097	0.0873034	0.0849778
chr8	94875761	94875855	3800676	0	+	0.425532	(0.408,0.44]	chr8	352466	3	SS3_PROX	SS3_PROX:INTRON	INTS8	ENSG00000164941.14	ENST00000523731.6:ENST00000524333.5:ENST00000343161.8:ENST00000523206.5:ENST00000520526.5:ENST00000521155.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	31	2	4.4358	4.517795	4.59979	0.0109537	0.00893097	0.0873034	0.0849778
chr9	4794125	4794225	4094877	0	+	0.43	(0.408,0.44]	chr9	373155	5	INTRON	INTRON	RCL1	ENSG00000120158.12	ENST00000381750.9:ENST00000381732.3:ENST00000442869.5:ENST00000473230.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	31	2	4.4358	4.517795	4.59979	0.0109537	0.00893097	0.0873034	0.0849778
chr6	135197823	135197920	2962326	0	+	0.319588	(0.28,0.32]	chr6	278620	1	INTRON	INTRON	MYB	ENSG00000118513.20	ENST00000341911.10:ENST00000442647.7:ENST00000316528.12:ENST00000616088.4:ENST00000339290.9:ENST00000367812.6:ENST00000463282.6:ENST00000525477.5:ENST00000533837.5:ENST00000367814.8:ENST00000527615.5:ENST00000525369.5:ENST00000438901.6:ENST00000525514.5:ENST00000526320.5:ENST00000526889.5:ENST00000529586.5:ENST00000531519.5:ENST00000533808.5:ENST00000528343.5:ENST00000524588.5:ENST00000525002.5:ENST00000525940.5:ENST00000526187.5:ENST00000526565.5:ENST00000528015.5:ENST00000528140.5:ENST00000528345.5:ENST00000528774.5:ENST00000529262.5:ENST00000531634.5:ENST00000531737.5:ENST00000533384.5:ENST00000533624.5:ENST00000534044.5:ENST00000534121.5:ENST00000531845.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	37	2	3.88145	4.5175149999999995	5.15358	0.0561985	0.0052282	0.18407	0.0633615
chr12	96324711	96324810	5394522	0	-	0.383838	(0.378,0.408]	chr12	514451	2	INTRON	INTRON	CDK17	ENSG00000059758.8	ENST00000261211.8:ENST00000543119.6:ENST00000542666.5:ENST00000551816.5:ENST00000552496.5:ENST00000548734.1:ENST00000552262.1	protein_coding	protein_coding	protein_coding	protein_coding	1	68	2	3.96977	4.516945	5.06412	0.0030522	9.19167e-5	0.0493883	0.00801007
chr7	127383874	127383973	3634156	0	-	0.262626	[0,0.28]	chr7	337767	62	INTRON	INTRON	ZNF800	ENSG00000048405.11	ENST00000265827.8:ENST00000393313.5:ENST00000393312.5:ENST00000434602.5:ENST00000436992.5:ENST00000439506.1	protein_coding	protein_coding	protein_coding	protein_coding	1	79	2	3.30083	4.516795	5.73276	0.00319246	0.00156565	0.0520345	0.0360583
chr16	16591684	16591784	6311779	0	+	0.44	(0.408,0.44]	chr16	604098	917	INTRON	INTRON	ENSG00000260126	ENSG00000260126.2	ENST00000567465.2	lncRNA	lncRNA	lncRNA	lncRNA	1	69	2	3.48793	4.51677	5.54561	0.00130904	1.20601e-4	0.0331539	0.00938389
chr16	47271101	47271201	6481793	0	-	0.3	(0.28,0.32]	chr16	626985	82	INTRON	INTRON	ITFG1	ENSG00000129636.13	ENST00000568047.5:ENST00000320640.11:ENST00000537184.6:ENST00000542691.5:ENST00000544001.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	33	2	4.4263	4.5161999999999995	4.6061	0.0330296	0.0102724	0.133816	0.089002
chr16	69663291	69663391	6380992	0	+	0.31	(0.28,0.32]	chr16	613211	30	INTRON	INTRON	NFAT5	ENSG00000102908.22	ENST00000426654.6:ENST00000349945.7:ENST00000354436.6:ENST00000627621.3:ENST00000650987.1:ENST00000567990.5:ENST00000567239.5:ENST00000393742.7:ENST00000565301.2:ENST00000566899.6:ENST00000563474.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	33	2	4.4263	4.5161999999999995	4.6061	0.0330296	0.0102724	0.133816	0.089002
chr19	51580192	51580291	7093642	0	+	0.30303	(0.28,0.32]	chr19	711035	61	INTRON	INTRON	ZNF175	ENSG00000105497.8	ENST00000262259.7:ENST00000596504.1:ENST00000436511.2	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.4263	4.5161999999999995	4.6061	0.0330296	0.0102724	0.133816	0.089002
chr3	43508121	43508221	1674295	0	-	0.29	(0.28,0.32]	chr3	170972	750	INTRON	INTRON	ANO10	ENSG00000160746.13	ENST00000292246.8:ENST00000350459.8:ENST00000396091.7:ENST00000414522.6:ENST00000451430.6:ENST00000448045.1	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.4263	4.5161999999999995	4.6061	0.0330296	0.0102724	0.133816	0.089002
chr3	47634390	47634489	1683570	0	-	0.292929	(0.28,0.32]	chr3	171978	117	INTRON	INTRON	SMARCC1	ENSG00000173473.11	ENST00000254480.10:ENST00000425518.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	33	2	4.4263	4.5161999999999995	4.6061	0.0330296	0.0102724	0.133816	0.089002
chr5	105231696	105231796	2694743	0	-	0.32	(0.28,0.32]	chr5	254244	2224	INTRON	INTRON	ENSG00000251574:ENSG00000253584	ENSG00000251574.8:ENSG00000253584.1	ENST00000503650.1:ENST00000522464.1	lncRNA	lncRNA	lncRNA	lncRNA	0	33	2	4.4263	4.5161999999999995	4.6061	0.0330296	0.0102724	0.133816	0.089002
chr5	115606610	115606710	2707521	0	-	0.32	(0.28,0.32]	chr5	254777	249	INTRON	INTRON	TMED7-TICAM2	ENSG00000251201.8	ENST00000282382.8:ENST00000333314.3:ENST00000514548.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	33	2	4.4263	4.5161999999999995	4.6061	0.0330296	0.0102724	0.133816	0.089002
chr5	126779263	126779363	2479196	0	+	0.32	(0.28,0.32]	chr5	236699	10	INTRON	INTRON	LMNB1	ENSG00000113368.12	ENST00000460265.5:ENST00000261366.10:ENST00000504788.5:ENST00000472034.5:ENST00000492190.5:ENST00000395354.1:ENST00000463908.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	33	2	4.4263	4.5161999999999995	4.6061	0.0330296	0.0102724	0.133816	0.089002
chr8	41964624	41964724	3940423	0	-	0.29	(0.28,0.32]	chr8	361184	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	KAT6A	ENSG00000083168.11	ENST00000406337.6:ENST00000265713.8:ENST00000396930.4:ENST00000649817.1:ENST00000648335.1:ENST00000649827.1:ENST00000485568.5:ENST00000647809.1:ENST00000647746.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	33	2	4.4263	4.5161999999999995	4.6061	0.0330296	0.0102724	0.133816	0.089002
chr9	125303991	125304086	4198682	0	+	0.315789	(0.28,0.32]	chr9	383174	8	INTRON	INTRON	GAPVD1	ENSG00000165219.23	ENST00000497580.5:ENST00000297933.11:ENST00000394084.5:ENST00000470056.5:ENST00000394105.6:ENST00000394083.6:ENST00000495955.5:ENST00000467750.5:ENST00000394104.6:ENST00000312123.13:ENST00000431329.5:ENST00000436712.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	33	2	4.4263	4.5161999999999995	4.6061	0.0330296	0.0102724	0.133816	0.089002
chr6	87596229	87596328	2915656	0	+	0.484848	(0.476,0.515]	chr6	275466	9	INTRON	INTRON	ORC3	ENSG00000135336.16	ENST00000546266.5:ENST00000257789.4:ENST00000392844.8:ENST00000681069.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	64	2	3.62464	4.516165	5.40769	6.23078e-4	5.079e-4	0.0229151	0.0202328
chr11	76510890	76510990	4836165	0	+	0.29	(0.28,0.32]	chr11	451080	138	INTRON	INTRON	EMSY	ENSG00000158636.17	ENST00000695367.1:ENST00000334736.7:ENST00000524490.5:ENST00000533972.5:ENST00000525038.5:ENST00000524767.5:ENST00000525919.5:ENST00000533248.5:ENST00000529032.5	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.50981	4.51607	4.52233	0.0275554	0.0129279	0.123904	0.0990564
chr12	68810780	68810879	5162996	0	+	0.30303	(0.28,0.32]	chr12	488875	11	INTRON	INTRON	MDM2	ENSG00000135679.27	ENST00000258149.11:ENST00000393412.7:ENST00000311420.13:ENST00000493419.1:ENST00000393417.8:ENST00000258148.11:ENST00000539479.6:ENST00000523991.5:ENST00000543323.5:ENST00000393415.7:ENST00000393416.7:ENST00000481186.6:ENST00000545204.2:ENST00000544561.6:ENST00000665020.1:ENST00000666617.1:ENST00000671567.1:ENST00000393410.5:ENST00000496959.5:ENST00000299252.8:ENST00000360430.6:ENST00000517852.5:ENST00000546048.5:ENST00000540352.5:ENST00000542502.5:ENST00000537182.5:ENST00000536089.5:ENST00000393413.7:ENST00000350057.9:ENST00000348801.7:ENST00000478070.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	33	2	4.50981	4.51607	4.52233	0.0275554	0.0129279	0.123904	0.0990564
chr12	91499814	91499914	5384214	0	-	0.29	(0.28,0.32]	chr12	513479	1001	INTRON	INTRON	ENSG00000289605	ENSG00000289605.1	ENST00000685093.1	lncRNA	lncRNA	lncRNA	lncRNA	0	33	2	4.50981	4.51607	4.52233	0.0275554	0.0129279	0.123904	0.0990564
chr12	120785889	120785989	5434717	0	-	0.32	(0.28,0.32]	chr12	519644	9	INTRON	INTRON	SPPL3	ENSG00000157837.16	ENST00000353487.7:ENST00000536996.5:ENST00000543608.5:ENST00000543854.5:ENST00000543181.5:ENST00000534966.1:ENST00000540091.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	33	2	4.50981	4.51607	4.52233	0.0275554	0.0129279	0.123904	0.0990564
chr17	19274859	19274953	6571118	0	+	0.308511	(0.28,0.32]	chr17	638958	6	INTRON	INTRON	EPN2	ENSG00000072134.16	ENST00000582015.5:ENST00000584707.5:ENST00000584633.1:ENST00000314728.10:ENST00000347697.6:ENST00000395618.7:ENST00000580579.5:ENST00000577692.5:ENST00000583197.5:ENST00000395628.6:ENST00000575595.5:ENST00000494192.6:ENST00000582234.5:ENST00000581024.5:ENST00000577244.5:ENST00000582969.5:ENST00000584150.5:ENST00000577195.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	33	2	4.50981	4.51607	4.52233	0.0275554	0.0129279	0.123904	0.0990564
chr2	242170883	242170981	1057571	0	+	0.295918	(0.28,0.32]	chr2	112783	34	INTRON	INTRON	LINC01881	ENSG00000220804.10	ENST00000683938.1:ENST00000682139.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	33	2	4.50981	4.51607	4.52233	0.0275554	0.0129279	0.123904	0.0990564
chr21	46260116	46260204	7471157	0	-	0.295455	(0.28,0.32]	chr21	761633	7	INTRON	INTRON	MCM3AP	ENSG00000160294.11	ENST00000397708.1:ENST00000291688.6:ENST00000486937.5:ENST00000496607.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	33	2	4.50981	4.51607	4.52233	0.0275554	0.0129279	0.123904	0.0990564
chr8	47262287	47262387	3747229	0	+	0.31	(0.28,0.32]	chr8	348758	9	INTRON	INTRON	SPIDR	ENSG00000164808.17	ENST00000541342.2:ENST00000523814.5:ENST00000518074.5:ENST00000522900.5:ENST00000297423.9:ENST00000521550.5:ENST00000517824.5:ENST00000524126.5:ENST00000524141.5:ENST00000519661.5:ENST00000522222.5:ENST00000522117.5:ENST00000524033.5:ENST00000524006.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	33	2	4.50981	4.51607	4.52233	0.0275554	0.0129279	0.123904	0.0990564
chrX	154718824	154718924	7914997	0	-	0.32	(0.28,0.32]	chrX	806107	21	INTRON	INTRON	GAB3	ENSG00000160219.12	ENST00000496390.5:ENST00000424127.3:ENST00000369575.7:ENST00000369568.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	33	2	4.50981	4.51607	4.52233	0.0275554	0.0129279	0.123904	0.0990564
chr5	146144906	146145005	2747019	0	-	0.282828	(0.28,0.32]	chr5	258826	3	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	LARS1	ENSG00000133706.19	ENST00000674174.1:ENST00000674170.1:ENST00000674479.1:ENST00000674309.1:ENST00000674218.1:ENST00000674467.1:ENST00000674290.1:ENST00000674447.1:ENST00000674270.1:ENST00000674383.1:ENST00000674191.1:ENST00000674158.1:ENST00000506231.6:ENST00000674471.1:ENST00000394434.7:ENST00000674398.1:ENST00000674277.1:ENST00000274562.13:ENST00000510191.5:ENST00000504323.6:ENST00000674310.1:ENST00000512412.2:ENST00000508667.5:ENST00000507095.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	119	2	2.95172	4.51562	6.07952	3.7205e-4	1.93993e-4	0.0173669	0.0127226
chr1	161329295	161329395	234687	0	+	0.41	(0.408,0.44]	chr1	28276	4	INTRON	INTRON	SDHC	ENSG00000143252.16	ENST00000367975.7:ENST00000342751.8:ENST00000432287.6:ENST00000513009.5:ENST00000392169.6:ENST00000504963.5:ENST00000470743.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	64	2	3.46104	4.515385	5.56973	0.00105552	3.81714e-4	0.0299229	0.0181283
chr21	44137796	44137893	7416322	0	+	0.463918	(0.44,0.476]	chr21	756033	1	INTRON	INTRON	GATD3	ENSG00000160221.18	ENST00000644251.1:ENST00000645487.1:ENST00000495007.5:ENST00000427803.6:ENST00000493883.5:ENST00000480786.1:ENST00000348499.9:ENST00000291577.11:ENST00000389690.7:ENST00000646873.1:ENST00000419699.1:ENST00000449622.6:ENST00000642815.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	85	2	3.18905	4.51526	5.84147	3.33091e-4	1.03947e-4	0.0162254	0.00915599
chr1	15506398	15506488	380567	0	-	0.577778	(0.57,1]	chr1	44628	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CASP9	ENSG00000132906.18	ENST00000546424.5:ENST00000333868.10:ENST00000348549.9:ENST00000400777.7:ENST00000424908.5:ENST00000375890.8:ENST00000474305.2:ENST00000447522.5:ENST00000440484.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	43	2	3.82801	4.515079999999999	5.20215	9.41714e-5	8.28896e-5	0.00813008	0.00812487
chr7	50667024	50667123	3531401	0	-	0.393939	(0.378,0.408]	chr7	329446	397	INTRON	INTRON	GRB10	ENSG00000106070.20	ENST00000335866.7:ENST00000398812.6:ENST00000398810.6:ENST00000401949.6:ENST00000402578.5:ENST00000644769.1:ENST00000403097.6:ENST00000644879.1:ENST00000406641.5:ENST00000402497.6:ENST00000357271.9:ENST00000643299.1:ENST00000407526.6:ENST00000645075.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	66	2	3.79857	4.513904999999999	5.22924	0.00172721	2.23525e-4	0.0374701	0.0131533
chr1	39565778	39565878	427673	0	-	0.45	(0.44,0.476]	chr1	51908	4	SS3_PROX	SS3_PROX:INTRON	PABPC4	ENSG00000090621.15	ENST00000677006.1:ENST00000527718.2:ENST00000676859.1:ENST00000372858.8:ENST00000372856.7:ENST00000372857.7:ENST00000372862.7:ENST00000676523.1:ENST00000677548.1:ENST00000678980.1:ENST00000677244.1:ENST00000677609.1:ENST00000679246.1:ENST00000678287.1:ENST00000678625.1:ENST00000470443.6:ENST00000677860.1:ENST00000676863.1:ENST00000678894.1:ENST00000421687.6:ENST00000525669.5:ENST00000513632.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	86	2	2.9044	4.513815	6.12323	0.00132926	2.60698e-5	0.0335085	0.0042231
chr1	47250636	47250736	445456	0	-	0.45	(0.44,0.476]	chr1	53977	6	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	STIL	ENSG00000123473.17	ENST00000360380.7:ENST00000371877.8:ENST00000337817.10:ENST00000682940.1:ENST00000683977.1:ENST00000682977.1:ENST00000396221.6:ENST00000684618.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	311	2	3.24308	4.51363	5.78418	5.58868e-6	2.27113e-10	0.00176693	2.53469e-6
chr4	1220962	1221061	2094716	0	-	0.424242	(0.408,0.44]	chr4	207127	44	INTRON	INTRON	CTBP1	ENSG00000159692.16	ENST00000382952.8:ENST00000290921.10:ENST00000504092.5:ENST00000510739.1:ENST00000505826.5:ENST00000514669.5:ENST00000506180.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	85	2	3.12458	4.51337	5.90216	4.61817e-4	8.66425e-5	0.0194611	0.00836204
chr10	86765913	86766013	4479490	0	+	0.26	[0,0.28]	chr10	412292	86	INTRON	INTRON	BMPR1A	ENSG00000107779.14	ENST00000638429.1:ENST00000372037.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	87	2	3.30695	4.513025	5.7191	0.00469836	3.82357e-4	0.0600108	0.0176949
chr7	158766653	158766753	3689177	0	-	0.4	(0.378,0.408]	chr7	342381	14	INTRON	INTRON	ESYT2	ENSG00000117868.18	ENST00000251527.10:ENST00000275418.13:ENST00000652148.1	protein_coding	protein_coding	protein_coding	protein_coding	4	130	2	2.3978	4.51292	6.62804	0.00235448	2.6325e-7	0.0436213	2.52144e-4
chr7	105549468	105549554	3375865	0	+	0.488372	(0.476,0.515]	chr7	316078	4	INTRON	INTRON	RINT1	ENSG00000135249.8	ENST00000257700.7:ENST00000497979.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	64	2	3.66565	4.5128	5.35995	7.54256e-4	4.18031e-4	0.0251179	0.0182827
chr10	131911261	131911361	4536967	0	+	0.49	(0.476,0.515]	chr10	418859	3	SS3_PROX	SS3_PROX:INTRON	PPP2R2D	ENSG00000175470.20	ENST00000455566.6:ENST00000616467.4:ENST00000482010.6:ENST00000470416.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	87	2	3.44103	4.51264	5.58425	2.97744e-4	8.64735e-5	0.0160246	0.00783027
chr5	32309958	32310058	2598370	0	-	0.49	(0.476,0.515]	chr5	246856	131	INTRON	INTRON	MTMR12	ENSG00000150712.11	ENST00000280285.9:ENST00000382142.8:ENST00000264934.5:ENST00000505419.5:ENST00000513622.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	64	2	3.40003	4.512625	5.62522	0.00139193	2.4907e-4	0.0341261	0.0145812
chr17	42476738	42476838	6611470	0	+	0.34	(0.32,0.35]	chr17	644092	54	INTRON	INTRON	ATP6V0A1	ENSG00000033627.17	ENST00000393829.6:ENST00000343619.9:ENST00000537728.5:ENST00000588901.5:ENST00000264649.10:ENST00000585525.5:ENST00000544137.5:ENST00000589727.5:ENST00000592324.1:ENST00000587375.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	71	2	3.18392	4.5123	5.84068	0.00379806	3.015e-4	0.0562562	0.0160895
chr2	172567333	172567433	920016	0	+	0.35	(0.32,0.35]	chr2	101361	4	SS5_PROX	SS5_PROX:INTRON	PDK1	ENSG00000152256.14	ENST00000392571.6:ENST00000410055.5:ENST00000282077.8:ENST00000431718.5:ENST00000416991.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	94	2	3.28616	4.512195	5.73823	4.5635e-4	2.51931e-4	0.0196892	0.0141209
chr1	150852940	150852997	552749	0	-	0.385965	(0.378,0.408]	chr1	65012	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ARNT	ENSG00000143437.21	ENST00000358595.10:ENST00000471844.6:ENST00000354396.6:ENST00000515192.5:ENST00000505755.5:ENST00000497108.6:ENST00000505979.5:ENST00000504358.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	32	2	4.10661	4.5121850000000006	4.91776	0.0399023	0.00196368	0.143072	0.0411469
chr1	161778569	161778669	235969	0	+	0.4	(0.378,0.408]	chr1	28522	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ATF6	ENSG00000118217.7	ENST00000680688.1:ENST00000679853.1:ENST00000681738.1:ENST00000681801.1:ENST00000681779.1:ENST00000367942.4:ENST00000681001.1:ENST00000679886.1:ENST00000681169.1:ENST00000681492.1:ENST00000680481.1:ENST00000680180.1:ENST00000681187.1:ENST00000680462.1:ENST00000680633.1:ENST00000681557.1:ENST00000681912.1:ENST00000679833.1:ENST00000681541.1:ENST00000681036.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	32	2	4.10661	4.5121850000000006	4.91776	0.0399023	0.00196368	0.143072	0.0411469
chr14	30044855	30044955	5852631	0	-	0.38	(0.378,0.408]	chr14	556327	642	INTRON	INTRON	ENSG00000248975	ENSG00000248975.2	ENST00000549360.1	lncRNA	lncRNA	lncRNA	lncRNA	0	32	2	4.10661	4.5121850000000006	4.91776	0.0399023	0.00196368	0.143072	0.0411469
chr8	98711300	98711400	3999014	0	-	0.39	(0.378,0.408]	chr8	366080	36	INTRON	INTRON	STK3	ENSG00000104375.17	ENST00000617590.1:ENST00000419617.7:ENST00000523601.5:ENST00000518165.5:ENST00000521649.5:ENST00000424861.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	32	2	4.10661	4.5121850000000006	4.91776	0.0399023	0.00196368	0.143072	0.0411469
chr20	47311796	47311895	7349061	0	-	0.414141	(0.408,0.44]	chr20	749342	12	INTRON	INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000468376.2:ENST00000435836.5:ENST00000446894.5:ENST00000441977.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	69	2	3.52471	4.5120249999999995	5.49934	0.00112428	1.5076e-4	0.0306963	0.0106137
chr17	19063740	19063839	6740852	0	-	0.545455	(0.515,0.57]	chr17	661756	5	EXON_SMALL	EXON_SMALL	SNORD3B-2	ENSG00000262074.7	ENST00000571722.3	snoRNA	snoRNA	snoRNA	snoRNA	18	724	2	4.0265	4.5118	4.9971	5.18228e-10	7.10257e-11	4.62693e-6	8.34692e-7
chr12	104628483	104628583	5212403	0	+	0.5	(0.476,0.515]	chr12	493329	261	INTRON	INTRON	CHST11	ENSG00000171310.11	ENST00000303694.6:ENST00000549260.5:ENST00000549016.1	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.24501	4.511785	4.77856	0.0247713	0.00305743	0.12011	0.0509893
chr2	69329998	69330098	1146720	0	-	0.48	(0.476,0.515]	chr2	122442	2	SS3_PROX	SS3_PROX:INTRON	GFPT1	ENSG00000198380.13	ENST00000361060.5:ENST00000357308.9:ENST00000674507.1:ENST00000674438.1	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.24501	4.511785	4.77856	0.0247713	0.00305743	0.12011	0.0509893
chr4	2560935	2561034	1912759	0	+	0.494949	(0.476,0.515]	chr4	191976	234	INTRON	INTRON	RNF4:FAM193A	ENSG00000063978.16:ENSG00000125386.16	ENST00000508235.1:ENST00000637812.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	31	2	4.24501	4.511785	4.77856	0.0247713	0.00305743	0.12011	0.0509893
chr7	152380261	152380361	3680736	0	-	0.5	(0.476,0.515]	chr7	341660	212	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000682301.1:ENST00000452749.2:ENST00000680867.1:ENST00000683800.1:ENST00000684278.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	31	2	4.24501	4.511785	4.77856	0.0247713	0.00305743	0.12011	0.0509893
chr9	132005740	132005840	4365450	0	-	0.5	(0.476,0.515]	chr9	401330	659	INTRON	INTRON	MED27	ENSG00000160563.14	ENST00000651950.1:ENST00000357028.6:ENST00000292035.10:ENST00000651555.1	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.24501	4.511785	4.77856	0.0247713	0.00305743	0.12011	0.0509893
chr10	125790425	125790525	4714421	0	-	0.25	[0,0.28]	chr10	434976	5	INTRON	INTRON	UROS	ENSG00000188690.15	ENST00000616800.4:ENST00000622016.4:ENST00000470483.1:ENST00000484541.5:ENST00000368786.5:ENST00000368797.10:ENST00000649536.1:ENST00000648427.1:ENST00000650587.1:ENST00000465577.6:ENST00000650524.1:ENST00000650472.1:ENST00000464267.1:ENST00000650185.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	34	2	4.46726	4.51172	4.55618	0.0427997	0.0171034	0.148082	0.110899
chr11	134205171	134205271	5054994	0	-	0.28	[0,0.28]	chr11	477208	2	SS3_PROX	SS3_PROX:INTRON	NCAPD3	ENSG00000151503.14	ENST00000534548.7:ENST00000692494.1:ENST00000688672.1:ENST00000534532.7:ENST00000689387.1:ENST00000688263.1:ENST00000525964.7:ENST00000690149.1:ENST00000687480.1:ENST00000690743.1:ENST00000685324.1:ENST00000689205.1:ENST00000525432.2:ENST00000687155.1:ENST00000685119.1:ENST00000687965.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	34	2	4.46726	4.51172	4.55618	0.0427997	0.0171034	0.148082	0.110899
chr17	20876745	20876844	6576146	0	+	0.242424	[0,0.28]	chr17	639372	77	INTRON	INTRON	CCDC144NL-AS1	ENSG00000233098.10	ENST00000577537.5:ENST00000692759.1:ENST00000443508.8:ENST00000692309.1:ENST00000439794.6:ENST00000417232.6:ENST00000583962.2:ENST00000582324.5:ENST00000577860.5	lncRNA	lncRNA	lncRNA	lncRNA	0	34	2	4.46726	4.51172	4.55618	0.0427997	0.0171034	0.148082	0.110899
chr17	30152824	30152922	6587751	0	+	0.204082	[0,0.28]	chr17	640567	23	INTRON	INTRON	NSRP1	ENSG00000126653.18	ENST00000540900.7:ENST00000612959.4:ENST00000247026.10:ENST00000577289.6:ENST00000584154.5:ENST00000394826.8:ENST00000475652.5:ENST00000584317.5:ENST00000585881.5:ENST00000467446.6:ENST00000580103.6:ENST00000581048.5:ENST00000588614.1:ENST00000589608.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	34	2	4.46726	4.51172	4.55618	0.0427997	0.0171034	0.148082	0.110899
chr19	24106066	24106162	7044602	0	+	0.270833	[0,0.28]	chr19	702407	1	EXON_MRNA	EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ZNF254	ENSG00000213096.11	ENST00000613065.4:ENST00000611359.3:ENST00000616028.2:ENST00000594886.5:ENST00000339642.10:ENST00000357002.5:ENST00000595187.1:ENST00000593783.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	34	2	4.46726	4.51172	4.55618	0.0427997	0.0171034	0.148082	0.110899
chr3	158248367	158248467	1539666	0	+	0.28	[0,0.28]	chr3	160296	167	INTRON	INTRON	RSRC1	ENSG00000174891.14	ENST00000480820.5:ENST00000295930.7:ENST00000471994.5:ENST00000683733.1:ENST00000682221.1:ENST00000683831.1:ENST00000683516.1:ENST00000482822.3:ENST00000476899.6:ENST00000464171.5:ENST00000611884.5:ENST00000682164.1:ENST00000684604.1:ENST00000683899.1:ENST00000682500.1:ENST00000684683.1:ENST00000312179.10:ENST00000475278.6:ENST00000480119.5:ENST00000471911.5:ENST00000683137.1:ENST00000477788.5:ENST00000496268.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	34	2	4.46726	4.51172	4.55618	0.0427997	0.0171034	0.148082	0.110899
chr5	109393851	109393951	2702211	0	-	0.28	[0,0.28]	chr5	254366	27	INTRON	INTRON	PJA2	ENSG00000198961.10	ENST00000361189.7:ENST00000511624.1:ENST00000512822.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	34	2	4.46726	4.51172	4.55618	0.0427997	0.0171034	0.148082	0.110899
chr6	135035756	135035856	3225277	0	-	0.28	[0,0.28]	chr6	299841	87	INTRON	INTRON	HBS1L	ENSG00000112339.15	ENST00000367837.10:ENST00000415177.6:ENST00000367826.6:ENST00000533274.5:ENST00000526100.5:ENST00000314674.7:ENST00000524715.5:ENST00000529882.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	34	2	4.46726	4.51172	4.55618	0.0427997	0.0171034	0.148082	0.110899
chr6	147229552	147229652	2988959	0	+	0.24	[0,0.28]	chr6	280001	231	INTRON	INTRON	STXBP5	ENSG00000164506.15	ENST00000321680.11:ENST00000367481.7:ENST00000546097.5:ENST00000367480.7	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.46726	4.51172	4.55618	0.0427997	0.0171034	0.148082	0.110899
chr7	1119958	1120057	3461660	0	-	0.262626	[0,0.28]	chr7	323589	101	INTRON	INTRON	C7orf50	ENSG00000146540.15	ENST00000357429.10:ENST00000397100.6:ENST00000397098.8:ENST00000488073.1:ENST00000491163.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	34	2	4.46726	4.51172	4.55618	0.0427997	0.0171034	0.148082	0.110899
chr7	127711417	127711516	3403001	0	+	0.272727	[0,0.28]	chr7	318124	34	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.46726	4.51172	4.55618	0.0427997	0.0171034	0.148082	0.110899
chr8	41728704	41728803	3938369	0	-	0.262626	[0,0.28]	chr8	361111	3	INTRON	INTRON	ANK1	ENSG00000029534.21	ENST00000347528.8:ENST00000265709.13:ENST00000289734.13	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.46726	4.51172	4.55618	0.0427997	0.0171034	0.148082	0.110899
chr8	105482431	105482531	3838886	0	+	0.22	[0,0.28]	chr8	354063	308	INTRON	INTRON	ZFPM2	ENSG00000169946.14	ENST00000407775.7:ENST00000520492.5:ENST00000520027.5:ENST00000524235.5:ENST00000511341.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	34	2	4.46726	4.51172	4.55618	0.0427997	0.0171034	0.148082	0.110899
chr7	17894233	17894333	3496099	0	-	0.45	(0.44,0.476]	chr7	326496	4	INTRON	INTRON	SNX13	ENSG00000071189.21	ENST00000428135.7:ENST00000611725.4:ENST00000409076.6:ENST00000444712.5:ENST00000482558.5:ENST00000409604.1:ENST00000492626.5:ENST00000475800.5:ENST00000474067.5:ENST00000498463.5:ENST00000494402.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	68	2	3.26669	4.51159	5.75649	0.00305435	4.17314e-5	0.0493883	0.00523306
chr1	224320021	224320120	644823	0	-	0.313131	(0.28,0.32]	chr1	76203	17	INTRON	INTRON	NVL	ENSG00000143748.18	ENST00000391875.6:ENST00000469968.5:ENST00000482491.5:ENST00000281701.11:ENST00000469075.5:ENST00000340871.8:ENST00000467882.5:ENST00000492281.5:ENST00000488718.5:ENST00000436927.5:ENST00000470989.5:ENST00000470903.5:ENST00000461466.5:ENST00000461546.2:ENST00000468673.5:ENST00000487758.5:ENST00000468088.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	33	2	4.33765	4.51146	4.68527	0.039714	0.00819419	0.143072	0.0810802
chr16	22477695	22477794	6322359	0	+	0.313131	(0.28,0.32]	chr16	605367	21	INTRON	INTRON	SMG1P1	ENSG00000237296.10	ENST00000381231.5:ENST00000309865.11:ENST00000431681.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	33	2	4.33765	4.51146	4.68527	0.039714	0.00819419	0.143072	0.0810802
chr3	42045111	42045211	1403973	0	+	0.32	(0.28,0.32]	chr3	147497	306	INTRON	INTRON	TRAK1	ENSG00000182606.17	ENST00000487159.5:ENST00000672026.1:ENST00000673621.2	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.33765	4.51146	4.68527	0.039714	0.00819419	0.143072	0.0810802
chr6	57174993	57175092	2878912	0	+	0.313131	(0.28,0.32]	chr6	273335	18	INTRON	INTRON	BAG2	ENSG00000112208.11	ENST00000370693.5	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.33765	4.51146	4.68527	0.039714	0.00819419	0.143072	0.0810802
chr7	106877551	106877649	3376841	0	+	0.306122	(0.28,0.32]	chr7	316199	24	INTRON	INTRON	PIK3CG	ENSG00000105851.11	ENST00000440650.6:ENST00000496166.6:ENST00000473541.5:ENST00000359195.3	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.33765	4.51146	4.68527	0.039714	0.00819419	0.143072	0.0810802
chr8	54069803	54069903	3953557	0	-	0.3	(0.28,0.32]	chr8	362624	36	INTRON	INTRON	LYPLA1	ENSG00000120992.18	ENST00000316963.8:ENST00000618914.4:ENST00000618741.1:ENST00000343231.10:ENST00000519272.5:ENST00000518546.5:ENST00000522007.5:ENST00000519891.5:ENST00000521352.5:ENST00000521898.5:ENST00000519926.5:ENST00000517297.5:ENST00000520896.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	33	2	4.33765	4.51146	4.68527	0.039714	0.00819419	0.143072	0.0810802
chr9	33046897	33046995	4243072	0	-	0.316327	(0.28,0.32]	chr9	390017	53	UTR3	UTR3:EXON_MRNA	SMU1	ENSG00000122692.9	ENST00000397149.4	protein_coding	protein_coding	protein_coding	protein_coding	1	73	2	3.35108	4.511325	5.67157	0.00221345	9.48957e-4	0.0435144	0.0281755
chr19	4988200	4988300	7003607	0	+	0.51	(0.476,0.515]	chr19	694800	186	INTRON	INTRON	KDM4B	ENSG00000127663.15	ENST00000159111.9:ENST00000611640.4:ENST00000588337.5:ENST00000381759.8	protein_coding	protein_coding	protein_coding	protein_coding	2	85	2	3.20821	4.5112049999999995	5.8142	3.05489e-4	1.0551e-4	0.0155972	0.00920724
chr12	110401731	110401831	5409179	0	-	0.51	(0.476,0.515]	chr12	516463	49	INTRON	INTRON	ANAPC7:ENSG00000258210	ENSG00000196510.14:ENSG00000258210.1	ENST00000455511.9:ENST00000450008.3:ENST00000552170.2:ENST00000550231.1:ENST00000464697.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay	0	31	2	4.32915	4.511175	4.6932	0.0124637	0.00753088	0.0973643	0.074841
chr5	180571732	180571832	2562649	0	+	0.5	(0.476,0.515]	chr5	245139	3	SS5_PROX	SS5_PROX:INTRON	CNOT6	ENSG00000113300.13	ENST00000261951.9:ENST00000393356.7:ENST00000618123.4	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.32915	4.511175	4.6932	0.0124637	0.00753088	0.0973643	0.074841
chr6	57925647	57925739	3115071	0	-	0.478261	(0.476,0.515]	chr6	291810	7	INTRON	INTRON	GUSBP4	ENSG00000239650.4	ENST00000423899.1	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	0	31	2	4.32915	4.511175	4.6932	0.0124637	0.00753088	0.0973643	0.074841
chr9	123186097	123186197	4339652	0	-	0.48	(0.476,0.515]	chr9	398947	14	INTRON	INTRON	STRBP	ENSG00000165209.19	ENST00000348403.10:ENST00000360998.3:ENST00000407982.6:ENST00000479114.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	31	2	4.32915	4.511175	4.6932	0.0124637	0.00753088	0.0973643	0.074841
chr16	89453591	89453691	6543232	0	-	0.37	(0.35,0.378]	chr16	634281	219	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	78	2	2.72497	4.51115	6.29733	0.0198266	3.29461e-6	0.109608	0.00118351
chr1	156867478	156867540	232806	0	+	0.306452	(0.28,0.32]	chr1	27563	1	INTRON	INTRON	NTRK1	ENSG00000198400.13	ENST00000489021.6:ENST00000392302.7:ENST00000674537.1:ENST00000497019.7:ENST00000530298.5:ENST00000368196.7:ENST00000524377.7:ENST00000358660.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	33	2	4.4334	4.511075	4.58875	0.0230574	0.0163355	0.118056	0.109464
chr11	66780983	66781083	4811710	0	+	0.32	(0.28,0.32]	chr11	447956	182	INTRON	INTRON	C11orf80	ENSG00000173715.18	ENST00000524551.5:ENST00000525908.6:ENST00000540737.7:ENST00000527634.5:ENST00000527368.5:ENST00000531400.6:ENST00000642265.1:ENST00000532565.6:ENST00000525449.6:ENST00000360962.10:ENST00000532727.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	33	2	4.4334	4.511075	4.58875	0.0230574	0.0163355	0.118056	0.109464
chr12	31978294	31978393	5106793	0	+	0.282828	(0.28,0.32]	chr12	482333	76	INTRON	INTRON	RESF1	ENSG00000174718.12	ENST00000541981.5:ENST00000540924.5:ENST00000312561.9:ENST00000535596.5:ENST00000397578.7:ENST00000381054.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	33	2	4.4334	4.511075	4.58875	0.0230574	0.0163355	0.118056	0.109464
chr18	31869671	31869771	6960643	0	-	0.29	(0.28,0.32]	chr18	688702	18	INTRON	INTRON	TRAPPC8	ENSG00000153339.15	ENST00000283351.10:ENST00000580104.5:ENST00000582539.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	33	2	4.4334	4.511075	4.58875	0.0230574	0.0163355	0.118056	0.109464
chr3	141541805	141541905	1525196	0	+	0.3	(0.28,0.32]	chr3	158846	8	INTRON	INTRON	RASA2	ENSG00000155903.14	ENST00000286364.9	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.4334	4.511075	4.58875	0.0230574	0.0163355	0.118056	0.109464
chr4	139333273	139333373	2050009	0	+	0.29	(0.28,0.32]	chr4	203286	307	INTRON	INTRON	NAA15	ENSG00000164134.13	ENST00000296543.10:ENST00000398947.1:ENST00000482087.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	33	2	4.4334	4.511075	4.58875	0.0230574	0.0163355	0.118056	0.109464
chr14	70587777	70587876	5917311	0	-	0.40404	(0.378,0.408]	chr14	562147	16	INTRON	INTRON	MED6	ENSG00000133997.12	ENST00000554963.5:ENST00000615788.4:ENST00000256379.10:ENST00000430055.6:ENST00000440435.2:ENST00000555296.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	32	2	4.21226	4.51097	4.80968	0.0177403	0.00679828	0.11319	0.0711802
chr14	77736506	77736597	5928713	0	-	0.395604	(0.378,0.408]	chr14	563825	1	SS5_PROX	SS5_PROX:INTRON	SNW1	ENSG00000100603.14	ENST00000261531.12:ENST00000554775.5:ENST00000556428.5:ENST00000555761.5:ENST00000553565.1:ENST00000554324.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	32	2	4.21226	4.51097	4.80968	0.0177403	0.00679828	0.11319	0.0711802
chr16	68350399	68350497	6372678	0	+	0.397959	(0.378,0.408]	chr16	612489	3	INTRON	INTRON	PRMT7	ENSG00000132600.18	ENST00000686904.1:ENST00000689486.1:ENST00000693200.1:ENST00000685141.1:ENST00000562050.6:ENST00000565745.6:ENST00000685109.1:ENST00000689637.1:ENST00000692867.1:ENST00000693670.1:ENST00000692760.1:ENST00000687654.1:ENST00000441236.3:ENST00000675132.1:ENST00000688470.1:ENST00000691833.1:ENST00000690432.1:ENST00000691804.1:ENST00000691961.1:ENST00000690932.1:ENST00000692632.1:ENST00000687444.1:ENST00000692283.1:ENST00000692621.1:ENST00000686053.1:ENST00000692966.1:ENST00000691663.1:ENST00000449359.7:ENST00000693309.1:ENST00000690311.1:ENST00000565356.5:ENST00000687558.1:ENST00000339507.9:ENST00000688969.1:ENST00000568975.5:ENST00000567542.5:ENST00000566708.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	32	2	4.21226	4.51097	4.80968	0.0177403	0.00679828	0.11319	0.0711802
chr2	158645687	158645786	899055	0	+	0.40404	(0.378,0.408]	chr2	99436	26	INTRON	INTRON	PKP4	ENSG00000144283.23	ENST00000389759.8:ENST00000426248.7:ENST00000389757.7:ENST00000452162.5:ENST00000421462.5:ENST00000492496.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	32	2	4.21226	4.51097	4.80968	0.0177403	0.00679828	0.11319	0.0711802
chr20	38430295	38430377	7342261	0	-	0.402439	(0.378,0.408]	chr20	748318	2	SS3_PROX	SS3_PROX:SS5_PROX:INTRON	SNHG17	ENSG00000196756.14	ENST00000654008.2:ENST00000658076.1:ENST00000662982.2:ENST00000456953.7:ENST00000654183.2:ENST00000663540.2:ENST00000651115.2:ENST00000660885.2:ENST00000662213.1:ENST00000665233.2:ENST00000666268.2:ENST00000665735.1:ENST00000660558.2:ENST00000691280.1:ENST00000658488.2:ENST00000688336.1:ENST00000668054.2:ENST00000690441.1:ENST00000655520.2:ENST00000687490.1:ENST00000664626.1:ENST00000658051.1:ENST00000668042.1:ENST00000686971.1:ENST00000663187.1:ENST00000657868.1:ENST00000663534.1:ENST00000689917.1:ENST00000664073.2:ENST00000653697.1:ENST00000656320.1:ENST00000686814.1:ENST00000417578.7:ENST00000654853.1:ENST00000436764.7:ENST00000668482.2:ENST00000671249.1:ENST00000655692.1:ENST00000693250.1:ENST00000691368.1:ENST00000693227.1:ENST00000690361.1:ENST00000670051.1:ENST00000667912.1:ENST00000693665.1:ENST00000665181.1:ENST00000687532.1:ENST00000691386.1:ENST00000693684.1:ENST00000666331.1:ENST00000669480.1:ENST00000658905.1:ENST00000661252.1:ENST00000669137.1:ENST00000688133.1:ENST00000689414.1:ENST00000691314.1:ENST00000669033.1:ENST00000686145.1:ENST00000653938.1:ENST00000663784.1:ENST00000665003.1:ENST00000656023.1:ENST00000692262.1:ENST00000414142.5:ENST00000670958.1:ENST00000657216.2:ENST00000664636.1:ENST00000657843.1:ENST00000423536.6:ENST00000666419.1:ENST00000413755.5	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	6	305	2	3.66739	4.510965000000001	5.35454	9.25245e-7	9.23464e-9	5.98778e-4	3.33439e-5
chr10	59789441	59789540	4622699	0	-	0.30303	(0.28,0.32]	chr10	425636	8	UTR3	UTR3:EXON_MRNA	CCDC6	ENSG00000108091.11	ENST00000263102.7	protein_coding	protein_coding	protein_coding	protein_coding	1	76	2	3.02632	4.510705	5.99509	0.0071944	2.74247e-4	0.0756118	0.0151711
chr5	80256780	80256877	2399512	0	+	0.43299	(0.408,0.44]	chr5	231768	7	EXON_LNCRNA	EXON_LNCRNA	ENSG00000288741	ENSG00000288741.1	ENST00000688442.1	lncRNA	lncRNA	lncRNA	lncRNA	2	94	2	3.2253	4.510574999999999	5.79585	4.07735e-4	3.36399e-5	0.0185763	0.00463632
chr1	40234703	40234801	80705	0	+	0.367347	(0.35,0.378]	chr1	10443	27	INTRON	INTRON	RLF	ENSG00000117000.9	ENST00000372771.5	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.1971	4.510434999999999	4.82377	0.0367539	0.00325499	0.138959	0.0524329
chr15	42230891	42230991	6155567	0	-	0.36	(0.35,0.378]	chr15	585826	3	SS5_PROX	SS5_PROX:INTRON	TMEM87A	ENSG00000103978.16	ENST00000389834.9:ENST00000448392.5:ENST00000566014.1:ENST00000562946.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	32	2	4.1971	4.510434999999999	4.82377	0.0367539	0.00325499	0.138959	0.0524329
chr17	57515128	57515228	6635349	0	+	0.36	(0.35,0.378]	chr17	648062	275	INTRON	INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000674961.1:ENST00000582453.5:ENST00000675656.1:ENST00000322684.7:ENST00000442934.6:ENST00000579180.2:ENST00000579205.5:ENST00000579505.5:ENST00000582772.1:ENST00000674898.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	32	2	4.1971	4.510434999999999	4.82377	0.0367539	0.00325499	0.138959	0.0524329
chr4	1915376	1915475	1911019	0	+	0.373737	(0.35,0.378]	chr4	191754	28	INTRON	INTRON	NSD2	ENSG00000109685.19	ENST00000508803.6:ENST00000508355.5:ENST00000514045.5:ENST00000398261.6:ENST00000382891.9:ENST00000353275.9:ENST00000382892.6:ENST00000382895.7:ENST00000312087.10:ENST00000420906.6:ENST00000503128.5:ENST00000509115.5:ENST00000677559.1:ENST00000512700.2:ENST00000678714.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	32	2	4.1971	4.510434999999999	4.82377	0.0367539	0.00325499	0.138959	0.0524329
chr9	105708850	105708949	4182685	0	+	0.353535	(0.35,0.378]	chr9	381501	27	INTRON	INTRON	TMEM38B	ENSG00000095209.12	ENST00000374692.8:ENST00000374688.5:ENST00000435034.5	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.1971	4.510434999999999	4.82377	0.0367539	0.00325499	0.138959	0.0524329
chr15	91011923	91012021	6259865	0	-	0.44898	(0.44,0.476]	chr15	597431	17	INTRON	INTRON	ENSG00000284946:VPS33B	ENSG00000284946.1:ENSG00000184056.15	ENST00000643536.1:ENST00000647331.1:ENST00000333371.8:ENST00000535906.1:ENST00000574755.5:ENST00000556096.6:ENST00000554264.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	31	2	4.23755	4.51024	4.78293	0.0263357	0.00292033	0.122221	0.0494641
chr19	53453153	53453252	7097329	0	+	0.444444	(0.44,0.476]	chr19	711612	28	INTRON	INTRON	ZNF761	ENSG00000160336.17	ENST00000651864.1:ENST00000684525.1:ENST00000432094.6:ENST00000334095.4	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.23755	4.51024	4.78293	0.0263357	0.00292033	0.122221	0.0494641
chr20	23397200	23397300	7321386	0	-	0.45	(0.44,0.476]	chr20	745534	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	NAPB	ENSG00000125814.17	ENST00000398425.7:ENST00000432543.6:ENST00000617876.4:ENST00000377026.4:ENST00000472855.5:ENST00000468128.5:ENST00000487502.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	31	2	4.23755	4.51024	4.78293	0.0263357	0.00292033	0.122221	0.0494641
chr7	140356461	140356560	3660856	0	-	0.474747	(0.44,0.476]	chr7	339826	3	INTRON	INTRON	SLC37A3	ENSG00000157800.18	ENST00000477571.5:ENST00000326232.14:ENST00000447932.6:ENST00000340308.7:ENST00000460560.5:ENST00000485861.5:ENST00000484416.5:ENST00000490760.5:ENST00000464865.5:ENST00000473707.5:ENST00000464834.5:ENST00000469193.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	31	2	4.23755	4.51024	4.78293	0.0263357	0.00292033	0.122221	0.0494641
chr9	87608571	87608671	4150920	0	+	0.45	(0.44,0.476]	chr9	378553	30	INTRON	INTRON	DAPK1	ENSG00000196730.13	ENST00000358077.9:ENST00000469640.6:ENST00000472284.5:ENST00000469067.5:ENST00000408954.8:ENST00000622514.4:ENST00000496522.5:ENST00000472344.1:ENST00000491893.5:ENST00000489291.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	31	2	4.23755	4.51024	4.78293	0.0263357	0.00292033	0.122221	0.0494641
chr1	245943867	245943967	675067	0	-	0.38	(0.378,0.408]	chr1	79699	132	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000366517.5:ENST00000490107.6:ENST00000493441.5:ENST00000488153.5:ENST00000492487.5:ENST00000391836.3:ENST00000464398.1:ENST00000453676.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	31	2	4.41169	4.5097000000000005	4.60771	0.0199606	0.00567576	0.109608	0.0678837
chr13	46153045	46153138	5586498	0	-	0.387097	(0.378,0.408]	chr13	533942	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	LCP1	ENSG00000136167.15	ENST00000398576.6:ENST00000323076.7:ENST00000469227.5:ENST00000494531.1:ENST00000416500.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	31	2	4.41169	4.5097000000000005	4.60771	0.0199606	0.00567576	0.109608	0.0678837
chr15	57034265	57034365	6033269	0	+	0.39	(0.378,0.408]	chr15	574669	325	INTRON	INTRON	TCF12	ENSG00000140262.18	ENST00000438423.6:ENST00000267811.9:ENST00000333725.10:ENST00000560190.5:ENST00000559609.5:ENST00000558908.5:ENST00000557843.5:ENST00000557947.5:ENST00000561152.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	31	2	4.41169	4.5097000000000005	4.60771	0.0199606	0.00567576	0.109608	0.0678837
chr2	23847635	23847735	1080144	0	-	0.38	(0.378,0.408]	chr2	115293	132	INTRON	INTRON	ATAD2B	ENSG00000119778.15	ENST00000238789.10	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.41169	4.5097000000000005	4.60771	0.0199606	0.00567576	0.109608	0.0678837
chr4	39885585	39885684	2131261	0	-	0.383838	(0.378,0.408]	chr4	210152	54	INTRON	INTRON	PDS5A	ENSG00000121892.15	ENST00000303538.13	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.41169	4.5097000000000005	4.60771	0.0199606	0.00567576	0.109608	0.0678837
chr9	112313679	112313778	4317761	0	-	0.393939	(0.378,0.408]	chr9	397079	154	INTRON	INTRON	PTBP3	ENSG00000119314.16	ENST00000334318.10:ENST00000458258.5:ENST00000374257.6:ENST00000374255.6:ENST00000343327.6:ENST00000487997.1:ENST00000210227.4:ENST00000450374.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	31	2	4.41169	4.5097000000000005	4.60771	0.0199606	0.00567576	0.109608	0.0678837
chr2	44493558	44493658	766657	0	+	0.37	(0.35,0.378]	chr2	86780	364	INTRON	INTRON	CAMKMT	ENSG00000143919.15	ENST00000378494.8:ENST00000402247.5:ENST00000407131.5:ENST00000428993.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	32	2	4.29961	4.50957	4.71953	0.0158483	0.0103314	0.109464	0.0850389
chr3	195976400	195976491	1896828	0	-	0.362637	(0.35,0.378]	chr3	189838	1	INTRON	INTRON	SDHAP1	ENSG00000185485.14	ENST00000427841.5:ENST00000440850.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	32	2	4.29961	4.50957	4.71953	0.0158483	0.0103314	0.109464	0.0850389
chrX	139918024	139918124	7905755	0	-	0.36	(0.35,0.378]	chrX	804457	859	INTRON	INTRON	ATP11C	ENSG00000101974.15	ENST00000370557.5:ENST00000682941.1:ENST00000485626.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	32	2	4.29961	4.50957	4.71953	0.0158483	0.0103314	0.109464	0.0850389
chr10	50622506	50622606	4620676	0	-	0.4	(0.378,0.408]	chr10	425458	319	INTRON	INTRON	SGMS1	ENSG00000198964.14	ENST00000429490.5:ENST00000361781.7:ENST00000619438.4:ENST00000609445.5:ENST00000608287.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	31	2	4.50056	4.50955	4.51854	0.015974	0.00748824	0.101453	0.0772645
chr12	120775996	120776095	5434612	0	-	0.393939	(0.378,0.408]	chr12	519626	60	INTRON	INTRON	SPPL3	ENSG00000157837.16	ENST00000353487.7:ENST00000536996.5:ENST00000543608.5:ENST00000543854.5	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.50056	4.50955	4.51854	0.015974	0.00748824	0.101453	0.0772645
chr13	95053775	95053854	5637364	0	-	0.468354	(0.44,0.476]	chr13	537002	2	EXON_LNCRNA	EXON_LNCRNA:INTRON	ABCC4	ENSG00000125257.16	ENST00000645237.2:ENST00000643051.1:ENST00000643842.1:ENST00000646439.1:ENST00000471041.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	31	2	4.33346	4.50955	4.68564	0.0120349	0.00816201	0.0962115	0.0766625
chr15	43857263	43857363	6012945	0	+	0.26	[0,0.28]	chr15	572799	1	SS5_PROX	SS5_PROX:INTRON	WDR76	ENSG00000092470.12	ENST00000381246.6:ENST00000263795.11	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.38387	4.50955	4.63523	0.0501911	0.0139836	0.156383	0.10247
chr15	49024494	49024593	6167078	0	-	0.272727	[0,0.28]	chr15	587780	46	INTRON	INTRON	SECISBP2L	ENSG00000138593.9	ENST00000559471.6:ENST00000261847.7:ENST00000380927.6:ENST00000559424.1	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.38387	4.50955	4.63523	0.0501911	0.0139836	0.156383	0.10247
chr16	29568870	29568970	6471288	0	-	0.39	(0.378,0.408]	chr16	625292	2	SS5_PROX	SS5_PROX:INTRON	ENSG00000288632:SMG1P2	ENSG00000288632.1:ENSG00000205534.6	ENST00000675579.1:ENST00000566127.1	lncRNA	lncRNA	lncRNA:transcribed_unprocessed_pseudogene	lncRNA:transcribed_unprocessed_pseudogene	0	31	2	4.50056	4.50955	4.51854	0.015974	0.00748824	0.101453	0.0772645
chr16	70005955	70006055	6509100	0	-	0.47	(0.44,0.476]	chr16	630286	91	INTRON	INTRON	PDXDC2P-NPIPB14P	ENSG00000196696.13	ENST00000531894.5:ENST00000530079.5:ENST00000525331.6:ENST00000526478.5:ENST00000529089.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	0	31	2	4.33346	4.50955	4.68564	0.0120349	0.00816201	0.0962115	0.0766625
chr19	38919087	38919174	7181287	0	-	0.448276	(0.44,0.476]	chr19	726066	3	SS3_PROX	SS3_PROX:INTRON	SARS2	ENSG00000104835.15	ENST00000221431.11:ENST00000594171.5:ENST00000430193.7:ENST00000600042.5:ENST00000455102.6:ENST00000598563.5:ENST00000602034.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	31	2	4.33346	4.50955	4.68564	0.0120349	0.00816201	0.0962115	0.0766625
chr2	26051177	26051277	713270	0	+	0.39	(0.378,0.408]	chr2	82440	85	INTRON	INTRON	RAB10	ENSG00000084733.11	ENST00000264710.5:ENST00000495146.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	31	2	4.50056	4.50955	4.51854	0.015974	0.00748824	0.101453	0.0772645
chr2	210149808	210149908	1320104	0	-	0.22	[0,0.28]	chr2	138424	203	INTRON	INTRON	KANSL1L	ENSG00000144445.17	ENST00000281772.14:ENST00000418791.5:ENST00000452086.5:ENST00000457374.5:ENST00000428655.5:ENST00000438563.5:ENST00000415553.1	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.38387	4.50955	4.63523	0.0501911	0.0139836	0.156383	0.10247
chr3	125355677	125355777	1806915	0	-	0.39	(0.378,0.408]	chr3	181470	164	INTRON	INTRON	ZNF148	ENSG00000163848.20	ENST00000360647.9:ENST00000468369.5:ENST00000484491.5:ENST00000492394.5:ENST00000485866.5:ENST00000465763.5:ENST00000495019.5:ENST00000471196.1	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.50056	4.50955	4.51854	0.015974	0.00748824	0.101453	0.0772645
chr3	194416418	194416516	1890460	0	-	0.387755	(0.378,0.408]	chr3	189102	9	INTRON	INTRON	ATP13A3	ENSG00000133657.17	ENST00000687055.1:ENST00000645538.1:ENST00000645319.2:ENST00000690810.1:ENST00000429136.7:ENST00000645621.1:ENST00000461660.2:ENST00000685123.1:ENST00000642744.2:ENST00000439040.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	31	2	4.50056	4.50955	4.51854	0.015974	0.00748824	0.101453	0.0772645
chr5	109345119	109345219	2701715	0	-	0.39	(0.378,0.408]	chr5	254321	3	SS3_PROX	SS3_PROX:INTRON	PJA2	ENSG00000198961.10	ENST00000361557.4:ENST00000361189.7	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.50056	4.50955	4.51854	0.015974	0.00748824	0.101453	0.0772645
chr9	98068069	98068169	4173491	0	+	0.22	[0,0.28]	chr9	380322	67	INTRON	INTRON	NANS	ENSG00000095380.11	ENST00000210444.6:ENST00000495319.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	34	2	4.38387	4.50955	4.63523	0.0501911	0.0139836	0.156383	0.10247
chr6	166945653	166945750	3264206	0	-	0.494845	(0.476,0.515]	chr6	303029	14	INTRON	INTRON	ENSG00000249141:RNASET2	ENSG00000249141.1:ENSG00000026297.17	ENST00000507747.1:ENST00000508775.6:ENST00000683770.1:ENST00000611959.2:ENST00000620173.5:ENST00000682774.1:ENST00000684236.1:ENST00000683968.1:ENST00000682498.1:ENST00000366855.10:ENST00000421787.5:ENST00000476238.6:ENST00000028008.9:ENST00000478180.6:ENST00000499370.6:ENST00000358165.7:ENST00000496851.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	186	2	3.82841	4.509505	5.1906	1.48377e-5	2.98483e-8	0.00309621	6.72355e-5
chr10	73606868	73606968	4651291	0	-	0.28	[0,0.28]	chr10	428085	4	SS3_PROX	SS3_PROX:INTRON	USP54	ENSG00000166348.20	ENST00000339859.8:ENST00000689425.1:ENST00000685297.1:ENST00000422491.7:ENST00000433394.1:ENST00000474929.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	34	2	4.47254	4.509320000000001	4.5461	0.0365918	0.020991	0.138959	0.122348
chr13	39028960	39029031	5576117	0	-	0.267606	[0,0.28]	chr13	533075	3	SS5_PROX	SS5_PROX:INTRON	PROSER1	ENSG00000120685.20	ENST00000352251.8:ENST00000625998.2:ENST00000436678.1:ENST00000418503.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	34	2	4.47254	4.509320000000001	4.5461	0.0365918	0.020991	0.138959	0.122348
chr15	56717881	56717980	6184991	0	-	0.252525	[0,0.28]	chr15	589644	102	INTRON	INTRON	ZNF280D	ENSG00000137871.21	ENST00000267807.12:ENST00000559237.5:ENST00000558002.5:ENST00000558320.5:ENST00000559352.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	34	2	4.47254	4.509320000000001	4.5461	0.0365918	0.020991	0.138959	0.122348
chr15	101176898	101176996	6269056	0	-	0.27551	[0,0.28]	chr15	597914	13	UTR3	UTR3:EXON_MRNA	CHSY1	ENSG00000131873.7	ENST00000254190.4	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.47254	4.509320000000001	4.5461	0.0365918	0.020991	0.138959	0.122348
chr21	39233996	39234096	7464726	0	-	0.24	[0,0.28]	chr21	760458	11	INTRON	INTRON	BRWD1	ENSG00000185658.14	ENST00000333229.6:ENST00000342449.8:ENST00000446924.5:ENST00000380800.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	34	2	4.47254	4.509320000000001	4.5461	0.0365918	0.020991	0.138959	0.122348
chr3	180605196	180605291	1568015	0	+	0.273684	[0,0.28]	chr3	162315	3	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TTC14	ENSG00000163728.11	ENST00000296015.9:ENST00000412756.6:ENST00000465065.5:ENST00000382584.8:ENST00000470669.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	34	2	4.47254	4.509320000000001	4.5461	0.0365918	0.020991	0.138959	0.122348
chr4	70832950	70833017	2155756	0	-	0.238806	[0,0.28]	chr4	212394	1	SS5_PROX	SS5_PROX:INTRON	GRSF1	ENSG00000132463.15	ENST00000254799.11:ENST00000505068.5:ENST00000499044.6:ENST00000502323.5:ENST00000514161.5:ENST00000506453.1:ENST00000508091.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	34	2	4.47254	4.509320000000001	4.5461	0.0365918	0.020991	0.138959	0.122348
chr4	98919308	98919408	2208424	0	-	0.21	[0,0.28]	chr4	216184	90	INTRON	INTRON	EIF4E	ENSG00000151247.13	ENST00000450253.7:ENST00000280892.10:ENST00000515638.5:ENST00000504432.5:ENST00000511644.5:ENST00000505992.1:ENST00000507665.5:ENST00000504472.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	34	2	4.47254	4.509320000000001	4.5461	0.0365918	0.020991	0.138959	0.122348
chr6	147823121	147823221	2992230	0	+	0.22	[0,0.28]	chr6	280177	857	INTRON	INTRON	ENSG00000227681	ENSG00000227681.5	ENST00000427015.1	lncRNA	lncRNA	lncRNA	lncRNA	0	34	2	4.47254	4.509320000000001	4.5461	0.0365918	0.020991	0.138959	0.122348
chr9	105736394	105736494	4182963	0	+	0.28	[0,0.28]	chr9	381513	134	INTRON	INTRON	TMEM38B	ENSG00000095209.12	ENST00000374692.8:ENST00000374688.5:ENST00000435034.5:ENST00000451560.1	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.47254	4.509320000000001	4.5461	0.0365918	0.020991	0.138959	0.122348
chrX	73975762	73975862	7682416	0	+	0.27	[0,0.28]	chrX	786638	74	INTRON	INTRON	JPX	ENSG00000225470.8	ENST00000664637.1:ENST00000639185.1:ENST00000655090.1:ENST00000640437.1:ENST00000660546.1:ENST00000667886.1:ENST00000660840.1:ENST00000657179.1:ENST00000670506.1:ENST00000657910.1:ENST00000662120.1:ENST00000671207.1:ENST00000659254.1:ENST00000656624.1:ENST00000667573.1:ENST00000660856.1:ENST00000660836.1:ENST00000668590.1:ENST00000658649.1:ENST00000414209.6:ENST00000654137.1:ENST00000670994.1:ENST00000602772.5:ENST00000655879.1:ENST00000657372.1:ENST00000657096.1:ENST00000602985.6:ENST00000670685.1:ENST00000670503.1:ENST00000663027.1:ENST00000654995.1:ENST00000602895.6:ENST00000654374.1:ENST00000660087.1:ENST00000665032.1:ENST00000671336.1:ENST00000671476.1:ENST00000667057.1:ENST00000670192.1:ENST00000670464.1:ENST00000665345.1:ENST00000661546.1:ENST00000662543.1:ENST00000602938.6:ENST00000664295.1:ENST00000654005.1:ENST00000669149.1:ENST00000659852.1:ENST00000656509.1:ENST00000602294.6:ENST00000667294.1:ENST00000663470.1:ENST00000602920.6:ENST00000671021.1:ENST00000659849.1:ENST00000667937.1:ENST00000661130.1:ENST00000654196.1:ENST00000655994.1:ENST00000659373.1:ENST00000662239.1:ENST00000670805.1:ENST00000656263.1:ENST00000653069.1:ENST00000657638.1:ENST00000653808.1:ENST00000653929.1:ENST00000653885.1:ENST00000659023.1:ENST00000602546.5:ENST00000659622.1:ENST00000671518.1:ENST00000670408.1	lncRNA	lncRNA	lncRNA	lncRNA	0	34	2	4.47254	4.509320000000001	4.5461	0.0365918	0.020991	0.138959	0.122348
chr10	15369955	15370055	4564318	0	-	0.57	(0.515,0.57]	chr10	421171	855	INTRON	INTRON	FAM171A1	ENSG00000148468.17	ENST00000378116.9:ENST00000455654.1	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.04086	4.509040000000001	4.97722	0.0197045	0.00168681	0.120063	0.0370386
chr10	70232370	70232468	4641208	0	-	0.530612	(0.515,0.57]	chr10	426975	16	INTRON	INTRON	PPA1	ENSG00000180817.12	ENST00000373232.8:ENST00000373230.7:ENST00000625364.1:ENST00000495346.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	31	2	4.04086	4.509040000000001	4.97722	0.0197045	0.00168681	0.120063	0.0370386
chr6	31539821	31539921	3078821	0	-	0.38	(0.378,0.408]	chr6	286763	1	SS5_PROX	SS5_PROX:INTRON	DDX39B	ENSG00000198563.14	ENST00000458640.5:ENST00000462256.5:ENST00000376177.6:ENST00000396172.6:ENST00000482195.5:ENST00000431908.5:ENST00000481456.1:ENST00000427214.5:ENST00000428098.5:ENST00000419338.5:ENST00000456662.5:ENST00000428450.5:ENST00000449757.5:ENST00000456976.5:ENST00000418897.5:ENST00000419020.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	91	2	2.65815	4.509040000000001	6.35993	0.00391167	1.15614e-5	0.0569957	0.00268546
chr1	229330545	229330645	652489	0	-	0.61	(0.57,1]	chr1	77248	26	INTRON	INTRON	CCSAP	ENSG00000154429.11	ENST00000366687.5:ENST00000284617.7:ENST00000366686.1:ENST00000483092.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	24	2	4.31277	4.508520000000001	4.70427	0.00346264	9.25341e-4	0.0539802	0.0278396
chr14	100383449	100383549	5815325	0	+	0.58	(0.57,1]	chr14	551378	9	INTRON	INTRON	WDR25	ENSG00000176473.14	ENST00000555775.5:ENST00000554998.5:ENST00000402312.8:ENST00000335290.10:ENST00000554492.5:ENST00000554175.5:ENST00000557710.5:ENST00000542471.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	24	2	4.31277	4.508520000000001	4.70427	0.00346264	9.25341e-4	0.0539802	0.0278396
chr7	105534125	105534220	3375702	0	+	0.6	(0.57,1]	chr7	316040	9	INTRON	INTRON	RINT1	ENSG00000135249.8	ENST00000467392.5:ENST00000482041.5:ENST00000493041.5:ENST00000257700.7:ENST00000497979.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	24	2	4.31277	4.508520000000001	4.70427	0.00346264	9.25341e-4	0.0539802	0.0278396
chr11	14514691	14514791	4918445	0	-	0.36	(0.35,0.378]	chr11	461004	2	SS3_PROX	SS3_PROX:INTRON	PSMA1	ENSG00000129084.18	ENST00000396394.7:ENST00000530457.5:ENST00000528307.5:ENST00000418988.2:ENST00000533331.5:ENST00000529524.1:ENST00000531156.5:ENST00000526443.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	72	2	3.25549	4.5078949999999995	5.7603	0.00363602	6.3427e-5	0.0535085	0.00658818
chr4	67645537	67645637	2153893	0	-	0.41	(0.408,0.44]	chr4	212116	2	SS5_PROX	SS5_PROX:INTRON	UBA6	ENSG00000033178.13	ENST00000322244.10	protein_coding	protein_coding	protein_coding	protein_coding	1	64	2	3.71874	4.50743	5.29612	0.00113523	3.17998e-4	0.0307488	0.0159645
chr2	208270011	208270111	992035	0	+	0.44	(0.408,0.44]	chr2	106587	32	INTRON	INTRON	PIKFYVE	ENSG00000115020.17	ENST00000264380.9:ENST00000443896.5:ENST00000392202.7:ENST00000407449.5:ENST00000308862.10:ENST00000422495.5:ENST00000452564.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	31	2	4.23096	4.50722	4.78348	0.0278028	0.00290352	0.123904	0.0494641
chr4	67533791	67533890	2153397	0	-	0.414141	(0.408,0.44]	chr4	211997	25	INTRON	INTRON	CENPC	ENSG00000145241.11	ENST00000273853.11:ENST00000506882.5:ENST00000510189.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	116	2	2.73586	4.50675	6.27764	2.9686e-4	1.31526e-5	0.0154293	0.00286967
chr3	42604247	42604346	1406007	0	+	0.232323	[0,0.28]	chr3	147651	13	INTRON	INTRON	NKTR	ENSG00000114857.19	ENST00000468735.6:ENST00000460910.5:ENST00000487466.5:ENST00000429888.5:ENST00000232978.13:ENST00000442970.5:ENST00000445842.1:ENST00000478488.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	81	2	3.00498	4.506525	6.00807	0.00876063	6.0063e-4	0.0846118	0.0226059
chr1	86982336	86982436	154272	0	+	0.44	(0.408,0.44]	chr1	16969	69	INTRON	INTRON	HS2ST1	ENSG00000153936.18	ENST00000370550.10:ENST00000370551.8:ENST00000687893.1:ENST00000693745.1:ENST00000689904.1:ENST00000690674.1:ENST00000591456.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	31	2	4.334	4.50647	4.67894	0.011982	0.0087648	0.0962115	0.0788605
chr1	91860870	91860970	504367	0	-	0.41	(0.408,0.44]	chr1	59635	595	INTRON	INTRON	TGFBR3	ENSG00000069702.11	ENST00000212355.9:ENST00000533089.5:ENST00000370399.6:ENST00000525962.5:ENST00000532540.5:ENST00000465892.6:ENST00000417833.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	31	2	4.334	4.50647	4.67894	0.011982	0.0087648	0.0962115	0.0788605
chr13	32704135	32704235	5466505	0	+	0.41	(0.408,0.44]	chr13	523810	23	INTRON	INTRON	PDS5B	ENSG00000083642.19	ENST00000315596.15:ENST00000450460.5:ENST00000481616.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	31	2	4.334	4.50647	4.67894	0.011982	0.0087648	0.0962115	0.0788605
chr16	22480662	22480753	6322393	0	+	0.417582	(0.408,0.44]	chr16	605382	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SMG1P1:NPIPB5	ENSG00000237296.10:ENSG00000243716.11	ENST00000309865.11:ENST00000431681.5:ENST00000415654.5	protein_coding	processed_transcript	protein_coding:transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	31	2	4.334	4.50647	4.67894	0.011982	0.0087648	0.0962115	0.0788605
chr16	70495168	70495267	6511623	0	-	0.424242	(0.408,0.44]	chr16	630731	44	INTRON	INTRON	COG4	ENSG00000103051.20	ENST00000564415.6:ENST00000323786.10:ENST00000530314.5:ENST00000393612.8:ENST00000674443.1:ENST00000482252.5:ENST00000526700.5:ENST00000564315.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	31	2	4.334	4.50647	4.67894	0.011982	0.0087648	0.0962115	0.0788605
chr17	81979936	81980035	6691594	0	+	0.414141	(0.408,0.44]	chr17	654300	3	INTRON	INTRON	ASPSCR1	ENSG00000169696.16	ENST00000581484.5:ENST00000306729.11:ENST00000344865.10:ENST00000306739.9:ENST00000581647.5:ENST00000580534.5:ENST00000583503.5:ENST00000579684.5:ENST00000582019.5:ENST00000584454.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	31	2	4.334	4.50647	4.67894	0.011982	0.0087648	0.0962115	0.0788605
chr17	67742185	67742284	6667670	0	+	0.333333	(0.32,0.35]	chr17	650524	15	INTRON	INTRON	NOL11	ENSG00000130935.10	ENST00000253247.9:ENST00000581375.5:ENST00000583108.5:ENST00000583021.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	32	2	4.45629	4.50645	4.55661	0.0246089	0.00927858	0.12011	0.0855292
chr20	441147	441235	7303011	0	-	0.340909	(0.32,0.35]	chr20	743445	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TBC1D20	ENSG00000125875.15	ENST00000680792.1:ENST00000354200.5:ENST00000461304.5:ENST00000681539.1:ENST00000679741.1:ENST00000680990.1:ENST00000681129.1:ENST00000681414.1:ENST00000681441.1:ENST00000680088.1:ENST00000680284.1:ENST00000681777.1:ENST00000681389.1:ENST00000679895.1:ENST00000680491.1:ENST00000679451.1:ENST00000679953.1:ENST00000461188.6:ENST00000680815.1:ENST00000680521.1:ENST00000681193.1:ENST00000681551.1:ENST00000679973.1:ENST00000680911.1:ENST00000679944.1:ENST00000681636.1:ENST00000680106.1:ENST00000494633.1:ENST00000680050.1:ENST00000681742.1:ENST00000680515.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	32	2	4.45629	4.50645	4.55661	0.0246089	0.00927858	0.12011	0.0855292
chr22	50223755	50223851	7603576	0	-	0.322917	(0.32,0.35]	chr22	778785	9	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	TUBGCP6	ENSG00000128159.12	ENST00000498611.5:ENST00000439308.6:ENST00000248846.10:ENST00000491449.5:ENST00000489511.5:ENST00000473946.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	32	2	4.45629	4.50645	4.55661	0.0246089	0.00927858	0.12011	0.0855292
chr8	52659564	52659652	3950546	0	-	0.340909	(0.32,0.35]	chr8	362327	2	INTRON	INTRON	RB1CC1	ENSG00000023287.13	ENST00000025008.10:ENST00000435644.6:ENST00000521611.1:ENST00000523594.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	32	2	4.45629	4.50645	4.55661	0.0246089	0.00927858	0.12011	0.0855292
chr9	127492995	127493093	4200745	0	+	0.336735	(0.32,0.35]	chr9	383575	2	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	LRSAM1	ENSG00000148356.15	ENST00000675224.1:ENST00000373324.8:ENST00000674771.1:ENST00000675641.1:ENST00000498513.6:ENST00000675572.1:ENST00000300417.11:ENST00000674784.1:ENST00000675789.1:ENST00000676349.1:ENST00000676336.1:ENST00000676170.1:ENST00000675448.1:ENST00000323301.8:ENST00000675141.1:ENST00000472068.2:ENST00000674516.1:ENST00000675883.1:ENST00000676014.1:ENST00000674970.1:ENST00000675253.1:ENST00000675657.1:ENST00000676318.1:ENST00000675945.1:ENST00000675213.1:ENST00000373322.1:ENST00000675445.1:ENST00000674621.1:ENST00000675198.1:ENST00000676399.1:ENST00000675662.1:ENST00000676137.1:ENST00000675012.1:ENST00000674511.1:ENST00000676409.1:ENST00000675521.1:ENST00000676106.1:ENST00000676035.1:ENST00000483302.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	32	2	4.45629	4.50645	4.55661	0.0246089	0.00927858	0.12011	0.0855292
chr2	241271716	241271816	1348127	0	-	0.46	(0.44,0.476]	chr2	141638	4	SS5_PROX	SS5_PROX:INTRON	HDLBP	ENSG00000115677.18	ENST00000391975.5:ENST00000427183.6:ENST00000310931.10:ENST00000391976.6:ENST00000428482.5:ENST00000442714.5:ENST00000452065.5:ENST00000444092.5:ENST00000430918.5:ENST00000441124.5:ENST00000426343.5:ENST00000413241.5:ENST00000423693.5:ENST00000425989.5:ENST00000449864.5:ENST00000420451.5:ENST00000422080.5:ENST00000458564.5:ENST00000427007.5:ENST00000449504.5:ENST00000417540.5:ENST00000462130.1:ENST00000490697.1:ENST00000496569.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	129	2	2.65397	4.5064150000000005	6.35886	2.19841e-4	7.44239e-6	0.0130082	0.00205207
chr12	121344546	121344645	5437107	0	-	0.424242	(0.408,0.44]	chr12	519915	21	INTRON	INTRON	ANAPC5	ENSG00000089053.13	ENST00000261819.8:ENST00000541887.5:ENST00000534976.5:ENST00000441917.6:ENST00000541652.5:ENST00000544442.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	69	2	3.10641	4.506395	5.90638	0.00555646	1.84308e-5	0.0648867	0.00328489
chr2	32204189	32204289	730175	0	+	0.24	[0,0.28]	chr2	84209	2	SS3_PROX	SS3_PROX:INTRON	SLC30A6	ENSG00000152683.14	ENST00000357055.7:ENST00000435660.5:ENST00000282587.9:ENST00000449777.5:ENST00000454324.5:ENST00000379343.6:ENST00000406369.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	35	2	4.1879	4.506114999999999	4.82433	0.0396579	0.0200334	0.161534	0.109608
chr6	105320755	105320855	3173996	0	-	0.28	[0,0.28]	chr6	296052	315	INTRON	INTRON	PREP	ENSG00000085377.15	ENST00000652536.2:ENST00000369110.8	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.1879	4.506114999999999	4.82433	0.0396579	0.0200334	0.161534	0.109608
chr7	12355254	12355343	3484927	0	-	0.58427	(0.57,1]	chr7	325868	4	INTRON	INTRON	VWDE	ENSG00000146530.15	ENST00000275358.8:ENST00000452576.6:ENST00000521169.5:ENST00000644150.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	122	2	3.99822	4.5060400000000005	5.01386	5.99791e-8	1.15001e-8	1.00431e-4	3.64339e-5
chrX	151407798	151407896	7735218	0	+	0.234694	[0,0.28]	chrX	791463	29	UTR3	UTR3:EXON_MRNA	VMA21	ENSG00000160131.14	ENST00000330374.7	protein_coding	protein_coding	protein_coding	protein_coding	1	79	2	3.18138	4.505935	5.83049	0.00487606	0.00112548	0.0640618	0.0306963
chr1	21168984	21169073	393552	0	-	0.516854	(0.515,0.57]	chr1	46842	6	INTRON	INTRON	EIF4G3	ENSG00000075151.24	ENST00000374935.7:ENST00000602326.6:ENST00000685872.1:ENST00000686579.1:ENST00000688741.1:ENST00000400422.6:ENST00000634879.2:ENST00000693470.1:ENST00000685814.1:ENST00000356916.7:ENST00000438975.5:ENST00000411888.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	29	2	4.41498	4.50564	4.5963	0.0106866	0.00370287	0.0861859	0.0561162
chr1	154958680	154958778	559667	0	-	0.520408	(0.515,0.57]	chr1	66582	18	UTR3	UTR3:EXON_MRNA	PYGO2	ENSG00000163348.4	ENST00000368457.3:ENST00000368456.1	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	4.41498	4.50564	4.5963	0.0106866	0.00370287	0.0861859	0.0561162
chr10	70162269	70162350	4640809	0	-	0.518519	(0.515,0.57]	chr10	426903	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SAR1A	ENSG00000079332.15	ENST00000373242.6:ENST00000373241.9:ENST00000373238.5:ENST00000373239.2	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	4.41498	4.50564	4.5963	0.0106866	0.00370287	0.0861859	0.0561162
chr16	402243	402343	6272082	0	+	0.53	(0.515,0.57]	chr16	598497	2	SS5_PROX	SS5_PROX:INTRON	NME4:DECR2	ENSG00000103202.13:ENSG00000242612.7	ENST00000444498.5:ENST00000627716.2:ENST00000424398.6:ENST00000633923.1:ENST00000219481.10:ENST00000631605.1:ENST00000439661.5:ENST00000437024.5:ENST00000633348.1:ENST00000445291.5:ENST00000633025.1:ENST00000461802.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	29	2	4.41498	4.50564	4.5963	0.0106866	0.00370287	0.0861859	0.0561162
chr17	42520126	42520226	6611937	0	+	0.54	(0.515,0.57]	chr17	644201	23	EXON_MRNA	EXON_MRNA:INTRON	ATP6V0A1	ENSG00000033627.17	ENST00000393829.6:ENST00000343619.9:ENST00000537728.5:ENST00000264649.10:ENST00000585525.5:ENST00000544137.5:ENST00000586201.5:ENST00000588138.1:ENST00000585828.5:ENST00000588806.1:ENST00000592831.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	29	2	4.41498	4.50564	4.5963	0.0106866	0.00370287	0.0861859	0.0561162
chr19	874648	874743	7110558	0	-	0.515789	(0.515,0.57]	chr19	714076	7	INTRON	INTRON	MED16	ENSG00000175221.16	ENST00000395808.7:ENST00000312090.10:ENST00000325464.6:ENST00000607471.5:ENST00000606248.5:ENST00000586017.5:ENST00000592943.5:ENST00000606828.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	29	2	4.41498	4.50564	4.5963	0.0106866	0.00370287	0.0861859	0.0561162
chr20	3375777	3375877	7308002	0	-	0.57	(0.515,0.57]	chr20	744198	2	SS5_PROX	SS5_PROX:INTRON	DNAAF9	ENSG00000088854.13	ENST00000252032.10	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	4.41498	4.50564	4.5963	0.0106866	0.00370287	0.0861859	0.0561162
chr5	88212672	88212772	2669173	0	-	0.53	(0.515,0.57]	chr5	252658	51	INTRON	INTRON	TMEM161B	ENSG00000164180.14	ENST00000514135.5:ENST00000296595.11:ENST00000511087.5:ENST00000510089.5:ENST00000506536.5:ENST00000511218.5:ENST00000512429.5:ENST00000507872.1:ENST00000509387.5:ENST00000503755.5:ENST00000513487.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	29	2	4.41498	4.50564	4.5963	0.0106866	0.00370287	0.0861859	0.0561162
chr9	94401181	94401280	4162430	0	+	0.525253	(0.515,0.57]	chr9	379485	259	INTRON	INTRON	MFSD14B	ENSG00000148110.17	ENST00000375344.8	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	4.41498	4.50564	4.5963	0.0106866	0.00370287	0.0861859	0.0561162
chr19	47149001	47149101	7084054	0	+	0.49	(0.476,0.515]	chr19	708754	50	INTRON	INTRON	SAE1	ENSG00000142230.13	ENST00000594144.5:ENST00000594526.5:ENST00000597808.5:ENST00000413379.7:ENST00000600706.5:ENST00000270225.12:ENST00000598840.5:ENST00000414294.6:ENST00000600753.1:ENST00000660039.1:ENST00000664120.1:ENST00000596995.1:ENST00000392776.3:ENST00000659110.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	32	2	4.01777	4.505595	4.99342	0.0411361	0.00139274	0.1451	0.0341261
chr5	65481631	65481727	2633815	0	-	0.5	(0.476,0.515]	chr5	250128	4	UTR5	UTR5:EXON_MRNA	ADAMTS6	ENSG00000049192.15	ENST00000381055.8	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.01777	4.505595	4.99342	0.0411361	0.00139274	0.1451	0.0341261
chr1	90958078	90958178	501886	0	-	0.52	(0.515,0.57]	chr1	59492	164	INTRON	INTRON	ZNF644	ENSG00000122482.22	ENST00000370440.5:ENST00000337393.10:ENST00000347275.9:ENST00000361321.5:ENST00000467231.5:ENST00000498303.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	29	2	4.50102	4.505509999999999	4.51	0.00809449	0.00510768	0.0766625	0.0646039
chr17	47174763	47174863	6789248	0	-	0.54	(0.515,0.57]	chr17	669633	23	INTRON	INTRON	CDC27	ENSG00000004897.12	ENST00000066544.8:ENST00000531206.5:ENST00000533415.5:ENST00000527547.5:ENST00000526866.5:ENST00000525495.6:ENST00000573550.5:ENST00000575483.5:ENST00000532893.5:ENST00000528748.5:ENST00000532575.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	29	2	4.50102	4.505509999999999	4.51	0.00809449	0.00510768	0.0766625	0.0646039
chr19	61327	61422	7108430	0	-	0.547368	(0.515,0.57]	chr19	713615	5	EXON_LNCRNA	EXON_LNCRNA	WASH5P	ENSG00000282458.1	ENST00000632506.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	0	29	2	4.50102	4.505509999999999	4.51	0.00809449	0.00510768	0.0766625	0.0646039
chr3	100013054	100013154	1463853	0	+	0.54	(0.515,0.57]	chr3	153494	9	INTRON	INTRON	CMSS1	ENSG00000184220.12	ENST00000463526.1:ENST00000421999.8:ENST00000491299.5:ENST00000496116.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	29	2	4.50102	4.505509999999999	4.51	0.00809449	0.00510768	0.0766625	0.0646039
chr6	3126542	3126641	2788683	0	+	0.555556	(0.515,0.57]	chr6	263384	24	INTRON	INTRON	BPHL	ENSG00000137274.13	ENST00000434640.5:ENST00000430655.6:ENST00000424847.6:ENST00000433912.5:ENST00000380379.10:ENST00000490918.5:ENST00000380368.6:ENST00000380375.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	29	2	4.50102	4.505509999999999	4.51	0.00809449	0.00510768	0.0766625	0.0646039
chr2	177218045	177218145	925974	0	+	0.37	(0.35,0.378]	chr2	101757	2	SS5_PROX	SS5_PROX:INTRON	HNRNPA3	ENSG00000170144.21	ENST00000392524.6:ENST00000679159.1:ENST00000678111.1:ENST00000678421.1:ENST00000677863.1:ENST00000676681.1:ENST00000676629.1:ENST00000677337.1:ENST00000676488.1:ENST00000677043.1:ENST00000676874.1:ENST00000676762.1:ENST00000411529.6:ENST00000676736.1:ENST00000483137.2:ENST00000677508.1:ENST00000435711.5:ENST00000679328.1:ENST00000432457.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	73	2	3.54684	4.50539	5.46394	0.00119142	2.60035e-4	0.0315806	0.014326
chr11	33735586	33735684	4941331	0	-	0.55102	(0.515,0.57]	chr11	462945	16	INTRON	INTRON	CD59	ENSG00000085063.17	ENST00000642928.2:ENST00000651785.1:ENST00000395850.9:ENST00000652086.1:ENST00000426650.7:ENST00000533403.6:ENST00000351554.8:ENST00000527577.5:ENST00000643183.1:ENST00000528700.2	protein_coding	protein_coding	protein_coding	protein_coding	1	58	2	3.58035	4.505269999999999	5.43019	5.21239e-4	2.60422e-4	0.0204523	0.0148796
chr16	89472861	89472961	6543425	0	-	0.53	(0.515,0.57]	chr16	634281	412	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	59	2	3.84625	4.50519	5.16413	8.14815e-4	1.34155e-4	0.0263656	0.00998237
chr16	70271280	70271380	6510308	0	-	0.53	(0.515,0.57]	chr16	630580	1	SS5_PROX	SS5_PROX:INTRON	AARS1	ENSG00000090861.17	ENST00000674963.1:ENST00000675643.1:ENST00000675917.1:ENST00000674691.1:ENST00000261772.13:ENST00000675569.1:ENST00000676209.1:ENST00000676211.1:ENST00000676040.1:ENST00000675953.1:ENST00000675691.1:ENST00000676004.1:ENST00000675270.1:ENST00000675403.1:ENST00000676212.1:ENST00000675045.1:ENST00000675035.1:ENST00000676168.1:ENST00000674652.1:ENST00000675133.1:ENST00000675120.1:ENST00000674811.1:ENST00000674512.1:ENST00000675853.1:ENST00000565361.3:ENST00000676247.1:ENST00000674848.1:ENST00000674962.1:ENST00000675371.1:ENST00000675986.1:ENST00000674768.1:ENST00000675297.1:ENST00000675751.1:ENST00000564359.6:ENST00000675338.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	30	2	4.08538	4.5050550000000005	4.92473	0.0253843	0.00108255	0.12011	0.0300133
chr1	235128394	235128494	661835	0	-	0.63	(0.57,1]	chr1	78342	4	SS5_PROX	SS5_PROX:INTRON	TOMM20	ENSG00000173726.11	ENST00000366607.5	protein_coding	protein_coding	protein_coding	protein_coding	11	321	2	4.47032	4.50474	4.53916	9.03611e-12	1e-12	1.94804e-7	5.45623e-8
chr2	27047931	27048031	716656	0	+	0.47	(0.44,0.476]	chr2	82815	50	INTRON	INTRON	AGBL5	ENSG00000084693.16	ENST00000421915.5	protein_coding	protein_coding	protein_coding	protein_coding	1	65	2	3.2029	4.504685	5.80647	0.00308681	1.22335e-4	0.0510391	0.00993581
chr17	60215471	60215570	6804084	0	-	0.363636	(0.35,0.378]	chr17	672257	3	INTRON	INTRON	USP32	ENSG00000170832.13	ENST00000300896.9:ENST00000592339.5:ENST00000590133.5:ENST00000591768.1	protein_coding	protein_coding	protein_coding	protein_coding	1	67	2	3.31736	4.504625	5.69189	0.00211072	3.71413e-4	0.0425419	0.0178698
chr20	2933583	2933683	7223165	0	+	0.48	(0.476,0.515]	chr20	733951	99	INTRON	INTRON	PTPRA	ENSG00000132670.21	ENST00000455631.5:ENST00000399903.7:ENST00000216877.10:ENST00000431048.5:ENST00000318266.9:ENST00000430705.5:ENST00000356147.3	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.10113	4.50437	4.90761	0.0226984	0.00386428	0.124921	0.0542786
chr22	46317111	46317210	7533682	0	+	0.50505	(0.476,0.515]	chr22	770322	3	INTRON	INTRON	GTSE1	ENSG00000075218.19	ENST00000454366.2:ENST00000479645.1:ENST00000466510.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	32	2	4.10113	4.50437	4.90761	0.0226984	0.00386428	0.124921	0.0542786
chr3	33848387	33848487	1394906	0	+	0.48	(0.476,0.515]	chr3	146115	24	INTRON	INTRON	PDCD6IP	ENSG00000170248.15	ENST00000457054.6:ENST00000648706.1:ENST00000307296.8:ENST00000465122.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	32	2	4.10113	4.50437	4.90761	0.0226984	0.00386428	0.124921	0.0542786
chr1	243159019	243159117	667737	0	-	0.387755	(0.378,0.408]	chr1	79242	22	INTRON	INTRON	CEP170	ENSG00000143702.16	ENST00000366544.5:ENST00000366543.5:ENST00000366542.6:ENST00000336415.8:ENST00000490813.5:ENST00000413359.6:ENST00000464936.5:ENST00000492145.1	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.31699	4.50434	4.69169	0.0250408	0.00432302	0.12011	0.0599409
chr10	100157828	100157928	4677899	0	-	0.4	(0.378,0.408]	chr10	431486	12	INTRON	INTRON	ERLIN1	ENSG00000107566.14	ENST00000421367.7:ENST00000407654.7:ENST00000370408.2	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.31699	4.50434	4.69169	0.0250408	0.00432302	0.12011	0.0599409
chr11	3864803	3864903	4723552	0	+	0.38	(0.378,0.408]	chr11	437119	80	INTRON	INTRON	STIM1	ENSG00000167323.12	ENST00000525403.5:ENST00000526596.2:ENST00000300737.8:ENST00000616714.4:ENST00000527651.5	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.31699	4.50434	4.69169	0.0250408	0.00432302	0.12011	0.0599409
chr11	67326931	67327031	4814346	0	+	0.4	(0.378,0.408]	chr11	448377	52	INTRON	INTRON	RAD9A	ENSG00000172613.8	ENST00000622583.4	protein_coding	processed_transcript	protein_coding	processed_transcript	0	31	2	4.31699	4.50434	4.69169	0.0250408	0.00432302	0.12011	0.0599409
chr15	27178270	27178370	5984226	0	+	0.4	(0.378,0.408]	chr15	569164	1511	INTRON	INTRON	GABRG3	ENSG00000182256.13	ENST00000615808.5:ENST00000555083.5	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.31699	4.50434	4.69169	0.0250408	0.00432302	0.12011	0.0599409
chr16	1843338	1843438	6430057	0	-	0.4	(0.378,0.408]	chr16	618349	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	MEIOB:ENSG00000260541	ENSG00000162039.17:ENSG00000260541.1	ENST00000325962.9:ENST00000470044.5:ENST00000397344.7:ENST00000570247.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	0	31	2	4.31699	4.50434	4.69169	0.0250408	0.00432302	0.12011	0.0599409
chr2	131112833	131112932	864471	0	+	0.383838	(0.378,0.408]	chr2	97119	44	INTRON	INTRON	PLEKHB2	ENSG00000115762.17	ENST00000403716.5:ENST00000439822.6:ENST00000409158.5:ENST00000234115.10:ENST00000628582.2:ENST00000482225.1:ENST00000693505.1:ENST00000438882.6:ENST00000404460.5:ENST00000409612.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	31	2	4.31699	4.50434	4.69169	0.0250408	0.00432302	0.12011	0.0599409
chr20	44989194	44989294	7278689	0	+	0.38	(0.378,0.408]	chr20	740065	15	INTRON	INTRON	STK4	ENSG00000101109.12	ENST00000499879.6:ENST00000372806.8:ENST00000372801.5:ENST00000474717.2	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.31699	4.50434	4.69169	0.0250408	0.00432302	0.12011	0.0599409
chr10	72564353	72564452	4646311	0	-	0.464646	(0.44,0.476]	chr10	427453	9	INTRON	INTRON	MICU1	ENSG00000107745.20	ENST00000361114.10:ENST00000642044.1:ENST00000635239.1:ENST00000604238.2:ENST00000603011.5:ENST00000604025.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	32	2	4.01038	4.504099999999999	4.99782	0.0433743	0.0013223	0.148082	0.0333932
chr17	61824945	61825045	6808548	0	-	0.52	(0.515,0.57]	chr17	672605	158	INTRON	INTRON	BRIP1	ENSG00000136492.10	ENST00000259008.7:ENST00000682755.1:ENST00000682453.1:ENST00000683039.1:ENST00000682989.1:ENST00000682589.1:ENST00000683235.1:ENST00000682477.1:ENST00000684584.1:ENST00000577598.5:ENST00000682066.1:ENST00000584322.2:ENST00000683381.1:ENST00000579028.2:ENST00000682611.1:ENST00000683692.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	30	2	4.17037	4.504005	4.83764	0.0139194	0.00279527	0.10247	0.0469265
chr19	2777393	2777492	7116701	0	-	0.555556	(0.515,0.57]	chr19	715508	68	INTRON	INTRON	SGTA	ENSG00000104969.11	ENST00000221566.7:ENST00000678109.1:ENST00000676984.1:ENST00000677513.1:ENST00000676943.1:ENST00000677731.1:ENST00000679138.1:ENST00000677562.1:ENST00000678595.1:ENST00000677754.1:ENST00000677149.1:ENST00000678577.1:ENST00000589251.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	30	2	4.17037	4.504005	4.83764	0.0139194	0.00279527	0.10247	0.0469265
chr5	103125718	103125818	2440082	0	+	0.52	(0.515,0.57]	chr5	234166	45	INTRON	INTRON	PPIP5K2	ENSG00000145725.20	ENST00000515845.5:ENST00000321521.13:ENST00000507921.5:ENST00000504275.1:ENST00000358359.8:ENST00000613674.4:ENST00000502481.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	30	2	4.17037	4.504005	4.83764	0.0139194	0.00279527	0.10247	0.0469265
chr10	24611693	24611793	4580813	0	-	0.33	(0.32,0.35]	chr10	422145	34	INTRON	INTRON	ARHGAP21	ENSG00000107863.20	ENST00000612832.4:ENST00000396432.7:ENST00000680286.1:ENST00000486374.5:ENST00000376410.7:ENST00000636789.1:ENST00000446003.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	32	2	4.36755	4.504004999999999	4.64046	0.0300552	0.00724767	0.129138	0.0756327
chr10	68908906	68909006	4443091	0	+	0.34	(0.32,0.35]	chr10	409748	15	INTRON	INTRON	DDX50	ENSG00000107625.14	ENST00000483593.5:ENST00000373585.8:ENST00000471475.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	32	2	4.36755	4.504004999999999	4.64046	0.0300552	0.00724767	0.129138	0.0756327
chr16	30332679	30332778	6473344	0	-	0.333333	(0.32,0.35]	chr16	625713	264	INTRON	INTRON	SMG1P5	ENSG00000183604.15	ENST00000529428.5:ENST00000411546.4:ENST00000691460.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	32	2	4.36755	4.504004999999999	4.64046	0.0300552	0.00724767	0.129138	0.0756327
chr2	15378105	15378205	1071304	0	-	0.35	(0.32,0.35]	chr2	114309	30	INTRON	INTRON	NBAS	ENSG00000151779.13	ENST00000281513.10:ENST00000442506.5:ENST00000441755.5	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.36755	4.504004999999999	4.64046	0.0300552	0.00724767	0.129138	0.0756327
chr2	171710869	171710969	917943	0	+	0.35	(0.32,0.35]	chr2	101104	31	INTRON	INTRON	DYNC1I2	ENSG00000077380.16	ENST00000340296.8:ENST00000452242.5:ENST00000397119.8:ENST00000410079.7:ENST00000438879.5:ENST00000508530.5:ENST00000409197.5:ENST00000456808.5:ENST00000409317.5:ENST00000409773.5:ENST00000411953.5:ENST00000409453.5:ENST00000445378.5:ENST00000435234.5:ENST00000443458.5:ENST00000412370.5:ENST00000425485.5:ENST00000423910.5:ENST00000430778.5:ENST00000422646.1:ENST00000482454.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	32	2	4.36755	4.504004999999999	4.64046	0.0300552	0.00724767	0.129138	0.0756327
chr5	136500519	136500619	2493747	0	+	0.35	(0.32,0.35]	chr5	238200	333	INTRON	INTRON	ENSG00000249803	ENSG00000249803.6	ENST00000653158.1:ENST00000446720.3:ENST00000665110.1:ENST00000511165.6:ENST00000666378.1:ENST00000657590.1:ENST00000658501.1:ENST00000660537.1:ENST00000659712.1	lncRNA	lncRNA	lncRNA	lncRNA	0	32	2	4.36755	4.504004999999999	4.64046	0.0300552	0.00724767	0.129138	0.0756327
chr1	149845190	149845289	549442	0	-	0.393939	(0.378,0.408]	chr1	64512	8	EXON_LNCRNA	EXON_LNCRNA	H2BC20P	ENSG00000261716.2	ENST00000564237.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	31	2	4.42349	4.5038800000000005	4.58427	0.0128325	0.00992961	0.0926667	0.0877296
chr11	118470300	118470395	4872462	0	+	0.389474	(0.378,0.408]	chr11	454992	11	INTRON	INTRON	ENSG00000285827:KMT2A	ENSG00000285827.1:ENSG00000118058.24	ENST00000648261.1:ENST00000389506.10:ENST00000534358.8:ENST00000533790.3:ENST00000527869.7:ENST00000649690.2:ENST00000691053.1:ENST00000531904.6:ENST00000649699.1:ENST00000648910.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	31	2	4.42349	4.5038800000000005	4.58427	0.0128325	0.00992961	0.0926667	0.0877296
chr15	68279858	68279958	6057439	0	+	0.39	(0.378,0.408]	chr15	576649	8	INTRON	INTRON	FEM1B	ENSG00000169018.6	ENST00000306917.5	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.42349	4.5038800000000005	4.58427	0.0128325	0.00992961	0.0926667	0.0877296
chr17	57442419	57442518	6634619	0	+	0.40404	(0.378,0.408]	chr17	648053	13	INTRON	INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000674961.1:ENST00000582453.5:ENST00000675656.1:ENST00000322684.7:ENST00000442934.6:ENST00000579180.2:ENST00000579205.5:ENST00000579505.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	31	2	4.42349	4.5038800000000005	4.58427	0.0128325	0.00992961	0.0926667	0.0877296
chr2	55551302	55551402	1124443	0	-	0.4	(0.378,0.408]	chr2	120595	9	INTRON	INTRON	PPP4R3B	ENSG00000275052.5	ENST00000616407.2:ENST00000611717.4:ENST00000616288.4	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.42349	4.5038800000000005	4.58427	0.0128325	0.00992961	0.0926667	0.0877296
chr2	121456297	121456396	1220437	0	-	0.383838	(0.378,0.408]	chr2	129958	41	INTRON	INTRON	CLASP1	ENSG00000074054.20	ENST00000263710.8:ENST00000397587.7:ENST00000541377.5:ENST00000409078.8:ENST00000455322.6:ENST00000452274.6	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.42349	4.5038800000000005	4.58427	0.0128325	0.00992961	0.0926667	0.0877296
chr3	14193862	14193961	1369316	0	+	0.393939	(0.378,0.408]	chr3	144298	95	INTRON	INTRON	LSM3	ENSG00000170860.4	ENST00000306024.4	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.42349	4.5038800000000005	4.58427	0.0128325	0.00992961	0.0926667	0.0877296
chr5	116147073	116147173	2456758	0	+	0.4	(0.378,0.408]	chr5	235517	125	INTRON	INTRON	COMMD10	ENSG00000145781.9	ENST00000507356.5:ENST00000274458.9:ENST00000632434.1:ENST00000515539.5:ENST00000506589.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	31	2	4.42349	4.5038800000000005	4.58427	0.0128325	0.00992961	0.0926667	0.0877296
chr5	131524116	131524216	2718054	0	-	0.38	(0.378,0.408]	chr5	255585	22	INTRON	INTRON	RAPGEF6	ENSG00000158987.22	ENST00000509018.6:ENST00000507093.5:ENST00000296859.10:ENST00000627212.2:ENST00000308008.10:ENST00000515170.5:ENST00000510071.5:ENST00000514179.5:ENST00000513227.5:ENST00000504575.5:ENST00000504039.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	31	2	4.42349	4.5038800000000005	4.58427	0.0128325	0.00992961	0.0926667	0.0877296
chr5	150494286	150494386	2519766	0	+	0.39	(0.378,0.408]	chr5	241013	75	INTRON	INTRON	NDST1	ENSG00000070614.15	ENST00000522491.1:ENST00000519157.1:ENST00000524161.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	31	2	4.42349	4.5038800000000005	4.58427	0.0128325	0.00992961	0.0926667	0.0877296
chr7	100103060	100103127	3363577	0	+	0.38806	(0.378,0.408]	chr7	314321	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	AP4M1	ENSG00000221838.10	ENST00000394061.7:ENST00000429084.5:ENST00000445208.5:ENST00000438383.5:ENST00000439416.5:ENST00000478501.5:ENST00000359593.9:ENST00000446007.5:ENST00000421755.5:ENST00000463195.5:ENST00000416938.5:ENST00000422582.5:ENST00000495154.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	31	2	4.42349	4.5038800000000005	4.58427	0.0128325	0.00992961	0.0926667	0.0877296
chr12	122217053	122217145	5439621	0	-	0.347826	(0.32,0.35]	chr12	520173	3	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	DIABLO	ENSG00000184047.20	ENST00000443649.9:ENST00000650715.1:ENST00000464942.7:ENST00000353548.11:ENST00000644227.1:ENST00000644509.1:ENST00000342392.3:ENST00000645569.1:ENST00000267169.11:ENST00000489781.3:ENST00000540535.6:ENST00000642640.1:ENST00000439489.6:ENST00000541273.6:ENST00000474004.6:ENST00000541656.6:ENST00000446652.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	32	2	4.46758	4.50373	4.53988	0.0202178	0.0119306	0.109913	0.0962115
chr16	53436144	53436244	6353551	0	+	0.33	(0.32,0.35]	chr16	609941	4	SS5_PROX	SS5_PROX:INTRON	RBL2	ENSG00000103479.17	ENST00000567964.6:ENST00000680543.1:ENST00000262133.11:ENST00000544405.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	32	2	4.46758	4.50373	4.53988	0.0202178	0.0119306	0.109913	0.0962115
chr17	59149068	59149168	6802338	0	-	0.35	(0.32,0.35]	chr17	671859	108	INTRON	INTRON	SKA2	ENSG00000182628.13	ENST00000330137.12:ENST00000580541.1:ENST00000578105.1:ENST00000578519.5:ENST00000583927.1:ENST00000581068.5:ENST00000437036.6:ENST00000583380.5:ENST00000583976.1:ENST00000584089.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	32	2	4.46758	4.50373	4.53988	0.0202178	0.0119306	0.109913	0.0962115
chr4	4443803	4443903	2101340	0	-	0.35	(0.32,0.35]	chr4	208129	49	INTRON	INTRON	STX18	ENSG00000168818.10	ENST00000505286.5:ENST00000306200.7:ENST00000503861.5:ENST00000512195.5:ENST00000507908.5:ENST00000512780.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	32	2	4.46758	4.50373	4.53988	0.0202178	0.0119306	0.109913	0.0962115
chr7	23306573	23306672	3289916	0	+	0.343434	(0.32,0.35]	chr7	305602	52	INTRON	INTRON	MALSU1	ENSG00000156928.5	ENST00000466681.2:ENST00000287543.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	32	2	4.46758	4.50373	4.53988	0.0202178	0.0119306	0.109913	0.0962115
chr9	112299513	112299613	4317619	0	-	0.35	(0.32,0.35]	chr9	397079	12	INTRON	INTRON	PTBP3	ENSG00000119314.16	ENST00000334318.10:ENST00000458258.5:ENST00000374257.6:ENST00000374255.6:ENST00000343327.6:ENST00000487997.1:ENST00000210227.4:ENST00000450374.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	32	2	4.46758	4.50373	4.53988	0.0202178	0.0119306	0.109913	0.0962115
chr6	13680304	13680404	3058910	0	-	0.33	(0.32,0.35]	chr6	284542	211	INTRON	INTRON	RANBP9	ENSG00000010017.13	ENST00000011619.6	protein_coding	protein_coding	protein_coding	protein_coding	1	69	2	3.45772	4.5035799999999995	5.54944	0.00128487	9.42646e-4	0.0333518	0.0280811
chr11	66648741	66648839	4811135	0	+	0.418367	(0.408,0.44]	chr11	447908	24	INTRON	INTRON	RBM4	ENSG00000173933.21	ENST00000396053.9:ENST00000578778.5:ENST00000506523.6	protein_coding	protein_coding	protein_coding	protein_coding	1	68	2	3.37162	4.50278	5.63394	0.00208674	7.78928e-5	0.0411801	0.00735438
chr11	3785834	3785934	4895058	0	-	0.28	[0,0.28]	chr11	458931	33	INTRON	INTRON	NUP98	ENSG00000110713.17	ENST00000359171.8:ENST00000324932.12:ENST00000650171.1:ENST00000355260.7:ENST00000397004.8:ENST00000397007.8:ENST00000532475.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	34	2	4.29536	4.502765	4.71017	0.0590175	0.0114708	0.167915	0.0956037
chr8	99208526	99208625	3813232	0	+	0.20202	[0,0.28]	chr8	353170	151	INTRON	INTRON	VPS13B	ENSG00000132549.20	ENST00000496144.5:ENST00000683334.1:ENST00000357162.7:ENST00000358544.7:ENST00000683619.1:ENST00000683869.1:ENST00000682153.1:ENST00000682358.1:ENST00000682145.1:ENST00000355155.6:ENST00000682234.1:ENST00000683486.1:ENST00000684308.1:ENST00000521932.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	34	2	4.29536	4.502765	4.71017	0.0590175	0.0114708	0.167915	0.0956037
chr8	140841478	140841578	4078464	0	-	0.26	[0,0.28]	chr8	370509	106	INTRON	INTRON	PTK2	ENSG00000169398.20	ENST00000696786.1:ENST00000522684.5:ENST00000395218.3:ENST00000519654.5:ENST00000521059.5:ENST00000517887.5:ENST00000519993.5:ENST00000340930.7:ENST00000519419.5:ENST00000524202.5:ENST00000524357.5:ENST00000521791.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	34	2	4.29536	4.502765	4.71017	0.0590175	0.0114708	0.167915	0.0956037
chr9	120776726	120776778	4335294	0	-	0.461538	(0.44,0.476]	chr9	398241	1	SS5_PROX	SS5_PROX:INTRON	FBXW2	ENSG00000119402.18	ENST00000684405.1:ENST00000684001.1:ENST00000684047.1:ENST00000608872.6:ENST00000453291.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	32	2	4.1054	4.502700000000001	4.9	0.0220205	0.00423315	0.123836	0.0572185
chr9	124519939	124520038	4346691	0	-	0.444444	(0.44,0.476]	chr9	399204	28	UTR3	UTR3:EXON_MRNA	NR6A1	ENSG00000148200.17	ENST00000487099.7	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.1054	4.502700000000001	4.9	0.0220205	0.00423315	0.123836	0.0572185
chr2	23856442	23856542	1080233	0	-	0.33	(0.32,0.35]	chr2	115295	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	ATAD2B	ENSG00000119778.15	ENST00000238789.10:ENST00000366438.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	69	2	3.53854	4.50248	5.46642	0.00127669	9.09596e-4	0.0326395	0.0277043
chr15	25364208	25364307	6121075	0	-	0.141414	[0,0.28]	chr15	582870	33	INTRON	INTRON	UBE3A	ENSG00000114062.22	ENST00000648336.2:ENST00000438097.6:ENST00000635914.1:ENST00000638155.1:ENST00000637886.1:ENST00000638011.1:ENST00000649550.1:ENST00000650110.1:ENST00000630424.2:ENST00000566215.5:ENST00000428984.6:ENST00000675177.1:ENST00000675593.1:ENST00000625778.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	34	2	4.38376	4.5023	4.62084	0.0313633	0.0258536	0.133676	0.13151
chr16	1842073	1842173	6430044	0	-	0.25	[0,0.28]	chr16	618346	1	SS3_PROX	SS3_PROX:INTRON	MEIOB:ENSG00000260541	ENSG00000162039.17:ENSG00000260541.1	ENST00000325962.9:ENST00000470044.5:ENST00000397344.7:ENST00000570247.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	0	34	2	4.38376	4.5023	4.62084	0.0313633	0.0258536	0.133676	0.13151
chrX	114037967	114038067	7868420	0	-	0.26	[0,0.28]	chrX	801551	461	INTRON	INTRON	XACT	ENSG00000241743.4	ENST00000468762.3:ENST00000649506.1	lncRNA	lncRNA	lncRNA	lncRNA	0	34	2	4.38376	4.5023	4.62084	0.0313633	0.0258536	0.133676	0.13151
chr10	50566175	50566275	4620112	0	-	0.3	(0.28,0.32]	chr10	425452	459	INTRON	INTRON	SGMS1	ENSG00000198964.14	ENST00000429490.5:ENST00000361781.7:ENST00000619438.4:ENST00000609445.5:ENST00000608287.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	33	2	4.2432	4.501754999999999	4.76031	0.0479043	0.00656106	0.153019	0.0735539
chr11	71498622	71498716	4822550	0	+	0.297872	(0.28,0.32]	chr11	449823	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	NADSYN1	ENSG00000172890.13	ENST00000319023.7:ENST00000525200.5:ENST00000530055.5:ENST00000531236.1:ENST00000530831.1:ENST00000525593.5:ENST00000527963.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	33	2	4.2432	4.501754999999999	4.76031	0.0479043	0.00656106	0.153019	0.0735539
chr15	83045502	83045601	6249221	0	-	0.282828	(0.28,0.32]	chr15	596405	32	INTRON	INTRON	BTBD1	ENSG00000064726.10	ENST00000261721.9:ENST00000379403.2:ENST00000559652.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	33	2	4.2432	4.501754999999999	4.76031	0.0479043	0.00656106	0.153019	0.0735539
chr2	171700566	171700666	917836	0	+	0.32	(0.28,0.32]	chr2	101092	73	INTRON	INTRON	DYNC1I2	ENSG00000077380.16	ENST00000340296.8:ENST00000452242.5:ENST00000397119.8:ENST00000410079.7:ENST00000438879.5:ENST00000508530.5:ENST00000409197.5:ENST00000456808.5:ENST00000409317.5:ENST00000409773.5:ENST00000411953.5:ENST00000409453.5:ENST00000445378.5:ENST00000435234.5:ENST00000443458.5:ENST00000412370.5:ENST00000425485.5:ENST00000423910.5:ENST00000430778.5:ENST00000422646.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	33	2	4.2432	4.501754999999999	4.76031	0.0479043	0.00656106	0.153019	0.0735539
chr6	150931251	150931350	2998526	0	+	0.282828	(0.28,0.32]	chr6	280539	46	INTRON	INTRON	MTHFD1L	ENSG00000120254.16	ENST00000611279.4:ENST00000367321.8:ENST00000618312.4:ENST00000441122.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	33	2	4.2432	4.501754999999999	4.76031	0.0479043	0.00656106	0.153019	0.0735539
chr7	149485626	149485726	3671712	0	-	0.32	(0.28,0.32]	chr7	340777	75	INTRON	INTRON	ZNF746	ENSG00000181220.18	ENST00000644635.1:ENST00000340622.8:ENST00000458143.7:ENST00000685153.1	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.2432	4.501754999999999	4.76031	0.0479043	0.00656106	0.153019	0.0735539
chr17	61710863	61710962	6807385	0	-	0.444444	(0.44,0.476]	chr17	672511	170	INTRON	INTRON	BRIP1	ENSG00000136492.10	ENST00000259008.7:ENST00000682755.1:ENST00000682453.1:ENST00000683039.1:ENST00000682989.1:ENST00000682589.1:ENST00000683235.1:ENST00000683535.1:ENST00000682477.1:ENST00000684584.1:ENST00000682073.1:ENST00000684769.1:ENST00000684626.1:ENST00000577598.5:ENST00000684471.1:ENST00000682433.1:ENST00000682066.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	33	2	3.97626	4.501645	5.02703	0.0300538	0.00278015	0.142135	0.0469265
chr16	89326744	89326844	6541941	0	-	0.49	(0.476,0.515]	chr16	634203	65	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000647238.1:ENST00000563291.1:ENST00000566858.5:ENST00000644045.1:ENST00000643147.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	64	2	3.29939	4.5016	5.70381	0.00211868	1.75496e-4	0.0425644	0.01216
chr6	107029724	107029824	2931537	0	+	0.53	(0.515,0.57]	chr6	276188	3	SS3_PROX	SS3_PROX:INTRON	MTRES1	ENSG00000130349.10	ENST00000311381.8:ENST00000405204.6:ENST00000625458.1	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	3.89856	4.501519999999999	5.10448	0.0280943	0.0010345	0.137011	0.029231300000000002
chr9	26942799	26942899	4238029	0	-	0.56	(0.515,0.57]	chr9	389652	72	INTRON	INTRON	PLAA	ENSG00000137055.15	ENST00000397292.8:ENST00000520884.5:ENST00000523212.1	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	3.89856	4.501519999999999	5.10448	0.0280943	0.0010345	0.137011	0.029231300000000002
chr1	35823382	35823482	70134	0	+	0.49	(0.476,0.515]	chr1	8943	4	SS5_PROX	SS5_PROX:INTRON	AGO4	ENSG00000134698.11	ENST00000373210.4	protein_coding	protein_coding	protein_coding	protein_coding	1	67	2	3.41728	4.501365	5.58545	0.00165726	1.04881e-4	0.0369207	0.00863456
chr1	245786865	245786965	673490	0	-	0.29	(0.28,0.32]	chr1	79659	224	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000366517.5:ENST00000366516.5:ENST00000482592.5:ENST00000490107.6:ENST00000470510.5:ENST00000483072.5:ENST00000490322.1:ENST00000493441.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	33	2	4.33863	4.501110000000001	4.66359	0.0207276	0.0193496	0.122348	0.108861
chr13	30303521	30303621	5569411	0	-	0.32	(0.28,0.32]	chr13	532291	194	INTRON	INTRON	KATNAL1	ENSG00000102781.14	ENST00000380615.8:ENST00000380617.7:ENST00000414289.5:ENST00000441394.1	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.33863	4.501110000000001	4.66359	0.0207276	0.0193496	0.122348	0.108861
chr15	63230271	63230371	6041164	0	+	0.44	(0.408,0.44]	chr15	575244	59	INTRON	INTRON	RAB8B	ENSG00000166128.13	ENST00000558990.5:ENST00000558119.5:ENST00000559927.1:ENST00000321437.9:ENST00000559006.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	32	2	4.00385	4.501110000000001	4.99837	0.0454568	0.00131369	0.149888	0.0333932
chr17	8569219	8569319	6721423	0	-	0.3	(0.28,0.32]	chr17	659639	1	SS5_PROX	SS5_PROX:INTRON	MYH10	ENSG00000133026.14	ENST00000379980.8:ENST00000269243.8:ENST00000688902.1:ENST00000684843.1:ENST00000687178.1:ENST00000692526.1:ENST00000688497.1:ENST00000685418.1:ENST00000693441.1:ENST00000686654.1:ENST00000360416.8:ENST00000691566.1:ENST00000686521.1:ENST00000692077.1:ENST00000686956.1:ENST00000465458.2:ENST00000690895.1:ENST00000690548.1:ENST00000692894.1:ENST00000687661.1:ENST00000693704.1:ENST00000472728.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	33	2	4.33863	4.501110000000001	4.66359	0.0207276	0.0193496	0.122348	0.108861
chr17	56938876	56938973	6799157	0	-	0.319588	(0.28,0.32]	chr17	671293	8	UTR3	UTR3:EXON_MRNA	COIL	ENSG00000121058.5	ENST00000240316.5	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.33863	4.501110000000001	4.66359	0.0207276	0.0193496	0.122348	0.108861
chr5	87350072	87350172	2668282	0	-	0.31	(0.28,0.32]	chr5	252550	308	INTRON	INTRON	CCNH	ENSG00000134480.16	ENST00000645953.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	0	33	2	4.33863	4.501110000000001	4.66359	0.0207276	0.0193496	0.122348	0.108861
chr8	123380428	123380528	4042480	0	-	0.29	(0.28,0.32]	chr8	368784	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ATAD2	ENSG00000156802.13	ENST00000287394.10:ENST00000517666.5:ENST00000521903.5:ENST00000519124.5:ENST00000521496.5:ENST00000530065.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	33	2	4.33863	4.501110000000001	4.66359	0.0207276	0.0193496	0.122348	0.108861
chr9	136442922	136443022	4374601	0	-	0.43	(0.408,0.44]	chr9	402942	7	INTRON	INTRON	SEC16A	ENSG00000148396.19	ENST00000467838.2:ENST00000290037.10:ENST00000313050.11:ENST00000371706.8:ENST00000453963.5:ENST00000277537.10:ENST00000313084.9:ENST00000684901.1:ENST00000689049.1:ENST00000689439.1:ENST00000688461.1:ENST00000688052.1:ENST00000690691.1:ENST00000431893.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	32	2	4.00385	4.501110000000001	4.99837	0.0454568	0.00131369	0.149888	0.0333932
chr1	89557118	89557217	157724	0	+	0.424242	(0.408,0.44]	chr1	17171	68	INTRON	INTRON	LRRC8B	ENSG00000197147.15	ENST00000330947.7:ENST00000439853.6:ENST00000449440.5:ENST00000640258.1:ENST00000639264.1	protein_coding	protein_coding	protein_coding	protein_coding	1	68	2	3.2451	4.501075	5.75705	0.00337792	4.13252e-5	0.0516884	0.00519938
chr6	161062717	161062817	3025205	0	+	0.28	[0,0.28]	chr6	282325	124	INTRON	INTRON	MAP3K4	ENSG00000085511.20	ENST00000366919.6:ENST00000392142.9:ENST00000542952.5:ENST00000366920.6:ENST00000348824.11:ENST00000544041.5:ENST00000490904.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	86	2	3.04867	4.50088	5.95309	0.0104221	1.4134e-4	0.085482	0.0102551
chr11	47373632	47373732	4949351	0	-	0.46	(0.44,0.476]	chr11	464068	132	INTRON	INTRON	SPI1	ENSG00000066336.12	ENST00000378538.8:ENST00000227163.8:ENST00000533030.1:ENST00000533968.1	protein_coding	protein_coding	protein_coding	protein_coding	1	69	2	3.65135	4.500835	5.35032	6.34922e-4	3.02713e-4	0.023163	0.0155054
chr15	63714165	63714261	6199677	0	-	0.302083	(0.28,0.32]	chr15	591316	1	INTRON	INTRON	HERC1	ENSG00000103657.14	ENST00000443617.7:ENST00000561400.1	protein_coding	protein_coding	protein_coding	protein_coding	1	74	2	3.1268	4.50052	5.87424	0.00508956	4.43011e-4	0.0646039	0.0194241
chr22	36521188	36521283	7585741	0	-	0.378947	(0.378,0.408]	chr22	776322	1	INTRON	INTRON	EIF3D	ENSG00000100353.18	ENST00000216190.13:ENST00000405442.5:ENST00000455547.5:ENST00000457241.5	protein_coding	protein_coding	protein_coding	protein_coding	2	86	2	3.01886	4.5004	5.98194	7.99379e-4	7.66211e-5	0.0258804	0.00781006
chr6	87228330	87228429	2913993	0	+	0.343434	(0.32,0.35]	chr6	275311	45	INTRON	INTRON	ZNF292	ENSG00000188994.13	ENST00000369577.8:ENST00000518845.1:ENST00000339907.8:ENST00000496806.2	protein_coding	protein_coding	protein_coding	protein_coding	2	102	2	3.02374	4.500115	5.97649	0.00133935	3.1737e-5	0.0335551	0.00449886
chr20	49170733	49170831	7352203	0	-	0.326531	(0.32,0.35]	chr20	749685	41	INTRON	INTRON	STAU1	ENSG00000124214.21	ENST00000371856.7:ENST00000371828.7:ENST00000340954.11:ENST00000347458.9:ENST00000360426.8:ENST00000371792.5:ENST00000371802.5:ENST00000437404.2:ENST00000456866.2	protein_coding	protein_coding	protein_coding	protein_coding	1	69	2	3.3721	4.500025	5.62795	0.00182912	7.01392e-4	0.0396683	0.024224
chr6	35883626	35883726	3088442	0	-	0.34	(0.32,0.35]	chr6	288860	89	INTRON	INTRON	SRPK1	ENSG00000096063.16	ENST00000373825.7:ENST00000423325.6:ENST00000346162.10:ENST00000361690.7:ENST00000510290.5:ENST00000373821.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	69	2	3.3721	4.500025	5.62795	0.00182912	7.01392e-4	0.0396683	0.024224
chr6	21231526	21231624	2835369	0	+	0.489796	(0.476,0.515]	chr6	265723	6	UTR3	UTR3:EXON_MRNA	CDKAL1	ENSG00000145996.11	ENST00000274695.8:ENST00000378610.1	protein_coding	protein_coding	protein_coding	protein_coding	1	74	2	4.00596	4.49969	4.99342	0.00139274	1.1409e-4	0.0341261	0.00960783
chr12	56628974	56629074	5335641	0	-	0.42	(0.408,0.44]	chr12	510086	111	INTRON	INTRON	BAZ2A	ENSG00000076108.12	ENST00000379441.7:ENST00000549884.6:ENST00000551812.5:ENST00000551959.1:ENST00000546695.5:ENST00000549506.5:ENST00000550730.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	32	2	4.10594	4.499605000000001	4.89327	0.0219367	0.00458906	0.123836	0.0595107
chr4	112620787	112620884	2228737	0	-	0.42268	(0.408,0.44]	chr4	218205	2	INTRON	INTRON	ZGRF1	ENSG00000138658.16	ENST00000445203.6:ENST00000505019.6:ENST00000473015.5:ENST00000309071.9:ENST00000264370.9:ENST00000514770.5:ENST00000503172.5:ENST00000512075.1:ENST00000502805.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	32	2	4.10594	4.499605000000001	4.89327	0.0219367	0.00458906	0.123836	0.0595107
chr10	21728822	21728920	4406382	0	+	0.346939	(0.32,0.35]	chr10	406567	5	INTRON	INTRON	MLLT10	ENSG00000078403.17	ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000651298.1:ENST00000377059.7:ENST00000651382.1:ENST00000438473.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	216	2	4.49001	4.49958	4.50915	1.72906e-5	1.33055e-7	0.00333191	1.64866e-4
chr1	151057286	151057385	553365	0	-	0.525253	(0.515,0.57]	chr1	65183	1	INTRON	INTRON	CDC42SE1	ENSG00000197622.13	ENST00000439374.6:ENST00000540998.5:ENST00000357235.6:ENST00000483763.5:ENST00000492796.5:ENST00000470278.5:ENST00000491825.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	29	2	4.31326	4.49947	4.68568	0.0141817	0.00270027	0.0959618	0.0479115
chr11	169751	169850	4887559	0	-	0.535354	(0.515,0.57]	chr11	457278	3	INTRON	INTRON	BET1L	ENSG00000177951.18	ENST00000410108.5	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	4.31326	4.49947	4.68568	0.0141817	0.00270027	0.0959618	0.0479115
chr3	167685083	167685180	1853540	0	-	0.56701	(0.515,0.57]	chr3	186273	3	INTRON	INTRON	PDCD10	ENSG00000114209.15	ENST00000392750.7:ENST00000473645.6:ENST00000497056.6:ENST00000492396.5:ENST00000461494.5:ENST00000470131.5:ENST00000475915.6	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	4.31326	4.49947	4.68568	0.0141817	0.00270027	0.0959618	0.0479115
chr7	100125809	100125909	3585606	0	-	0.54	(0.515,0.57]	chr7	334240	61	INTRON	INTRON	ENSG00000242798	ENSG00000242798.1	ENST00000494221.1	lncRNA	lncRNA	lncRNA	lncRNA	0	29	2	4.31326	4.49947	4.68568	0.0141817	0.00270027	0.0959618	0.0479115
chr9	135816699	135816796	4371337	0	-	0.515464	(0.515,0.57]	chr9	402402	3	INTRON	INTRON	CAMSAP1	ENSG00000130559.19	ENST00000389532.9:ENST00000312405.10:ENST00000483991.5:ENST00000409386.3:ENST00000482664.5:ENST00000487868.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	29	2	4.31326	4.49947	4.68568	0.0141817	0.00270027	0.0959618	0.0479115
chrX	101159331	101159431	7694766	0	+	0.52	(0.515,0.57]	chrX	787429	108	INTRON	INTRON	CENPI	ENSG00000102384.14	ENST00000684367.1:ENST00000423383.3:ENST00000682095.1:ENST00000372927.5	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	4.31326	4.49947	4.68568	0.0141817	0.00270027	0.0959618	0.0479115
chr20	3972543	3972642	7308976	0	-	0.30303	(0.28,0.32]	chr20	744293	82	INTRON	INTRON	RNF24	ENSG00000101236.17	ENST00000336095.10:ENST00000358395.11:ENST00000432261.6:ENST00000545616.2	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.01002	4.49937	4.98872	0.0434868	0.00838468	0.162255	0.0774402
chr12	105121460	105121538	5214787	0	+	0.358974	(0.35,0.378]	chr12	493434	3	SS5_PROX	SS5_PROX:INTRON	WASHC4	ENSG00000136051.15	ENST00000311317.8:ENST00000550053.5:ENST00000332180.10:ENST00000620430.5:ENST00000547404.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	33	2	3.97032	4.49932	5.02832	0.0578667	0.00156444	0.167723	0.0365263
chr15	44648465	44648565	6164624	0	-	0.37	(0.35,0.378]	chr15	587414	2	SS5_PROX	SS5_PROX:INTRON	SPG11	ENSG00000104133.16	ENST00000684235.1:ENST00000261866.12:ENST00000559511.6:ENST00000682065.1:ENST00000682669.1:ENST00000683496.1:ENST00000682460.1:ENST00000682495.1:ENST00000684038.1:ENST00000683186.1:ENST00000683734.1:ENST00000683753.1:ENST00000535302.6:ENST00000427534.6:ENST00000558319.5:ENST00000684676.1:ENST00000682788.1:ENST00000683121.1:ENST00000682915.1:ENST00000683255.1:ENST00000683573.1:ENST00000682877.1:ENST00000559193.5:ENST00000684490.1:ENST00000682410.1:ENST00000682648.1:ENST00000557866.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:non_stop_decay:nonsense_mediated_decay:processed_transcript	0	33	2	3.97032	4.49932	5.02832	0.0578667	0.00156444	0.167723	0.0365263
chr7	103085345	103085443	3372948	0	+	0.357143	(0.35,0.378]	chr7	315662	9	INTRON	INTRON	ARMC10	ENSG00000170632.14	ENST00000441711.6:ENST00000454559.5:ENST00000428183.6:ENST00000541300.5:ENST00000425331.5:ENST00000323735.10:ENST00000306450.5:ENST00000323716.8:ENST00000434153.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	33	2	3.97032	4.49932	5.02832	0.0578667	0.00156444	0.167723	0.0365263
chr17	4324886	4324986	6711944	0	-	0.52	(0.515,0.57]	chr17	657718	174	INTRON	INTRON	UBE2G1	ENSG00000132388.13	ENST00000396981.7:ENST00000572484.5:ENST00000574633.5:ENST00000571980.1:ENST00000571953.5:ENST00000574059.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	29	2	4.399	4.49907	4.59914	0.00708863	0.00616166	0.0754923	0.0676501
chr17	42481955	42482052	6611531	0	+	0.536082	(0.515,0.57]	chr17	644116	2	INTRON	INTRON	ATP6V0A1	ENSG00000033627.17	ENST00000393829.6:ENST00000343619.9:ENST00000537728.5:ENST00000264649.10:ENST00000585525.5:ENST00000544137.5:ENST00000589727.5:ENST00000587882.5:ENST00000589759.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	29	2	4.399	4.49907	4.59914	0.00708863	0.00616166	0.0754923	0.0676501
chr19	49978469	49978568	7202070	0	-	0.535354	(0.515,0.57]	chr19	730682	13	INTRON	INTRON	VRK3	ENSG00000105053.11	ENST00000316763.8:ENST00000377011.6:ENST00000599538.5	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	4.399	4.49907	4.59914	0.00708863	0.00616166	0.0754923	0.0676501
chr2	25872182	25872281	1085479	0	-	0.525253	(0.515,0.57]	chr2	115962	263	INTRON	INTRON	ASXL2	ENSG00000143970.18	ENST00000435504.9:ENST00000336112.9:ENST00000682588.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	29	2	4.399	4.49907	4.59914	0.00708863	0.00616166	0.0754923	0.0676501
chrX	48464545	48464642	7815403	0	-	0.515464	(0.515,0.57]	chrX	796682	12	INTRON	INTRON	SLC38A5	ENSG00000017483.16	ENST00000595796.5:ENST00000619100.4:ENST00000620913.5:ENST00000497336.1:ENST00000494034.5:ENST00000440085.5:ENST00000441948.5:ENST00000413668.5:ENST00000416711.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	29	2	4.399	4.49907	4.59914	0.00708863	0.00616166	0.0754923	0.0676501
chr16	312355	312454	6426452	0	-	0.313131	(0.28,0.32]	chr16	617494	19	INTRON	INTRON	AXIN1	ENSG00000103126.15	ENST00000262320.8:ENST00000461023.5:ENST00000354866.7:ENST00000481769.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	34	2	4.03345	4.498995000000001	4.96454	0.0704058	0.00344078	0.184298	0.0539802
chr2	27590891	27590990	718012	0	+	0.292929	(0.28,0.32]	chr2	83352	68	INTRON	INTRON	ZNF512	ENSG00000243943.10	ENST00000413371.6:ENST00000416005.6:ENST00000556601.5:ENST00000379717.5:ENST00000355467.6:ENST00000494548.1:ENST00000461705.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	34	2	4.03345	4.498995000000001	4.96454	0.0704058	0.00344078	0.184298	0.0539802
chr3	33064765	33064863	1650834	0	-	0.316327	(0.28,0.32]	chr3	169269	27	INTRON	INTRON	GLB1	ENSG00000170266.16	ENST00000399402.7:ENST00000307363.10:ENST00000307377.12:ENST00000482097.5:ENST00000485698.5:ENST00000498537.5:ENST00000415454.1:ENST00000446732.5:ENST00000438227.1:ENST00000440656.1:ENST00000464355.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	34	2	4.03345	4.498995000000001	4.96454	0.0704058	0.00344078	0.184298	0.0539802
chr3	150425516	150425616	1533601	0	+	0.3	(0.28,0.32]	chr3	159811	20	INTRON	INTRON	TSC22D2	ENSG00000196428.13	ENST00000361875.8:ENST00000688009.1:ENST00000480589.1:ENST00000466814.1:ENST00000485421.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	34	2	4.03345	4.498995000000001	4.96454	0.0704058	0.00344078	0.184298	0.0539802
chr2	15548208	15548307	1073033	0	-	0.424242	(0.408,0.44]	chr2	114459	85	INTRON	INTRON	NBAS	ENSG00000151779.13	ENST00000281513.10	protein_coding	protein_coding	protein_coding	protein_coding	7	157	2	2.72006	4.49885	6.27764	4.60038e-5	1.31526e-5	0.00552588	0.00286967
chr2	174119086	174119186	1269554	0	-	0.35	(0.32,0.35]	chr2	134263	367	INTRON	INTRON	OLA1	ENSG00000138430.16	ENST00000284719.8:ENST00000344357.9:ENST00000428402.6:ENST00000409546.5:ENST00000392560.6:ENST00000462000.1:ENST00000429575.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	75	2	3.38612	4.49868	5.61124	0.00249604	1.88018e-4	0.0446195	0.011951
chr16	87401475	87401574	6416907	0	+	0.343434	(0.32,0.35]	chr16	615628	14	INTRON	INTRON	MAP1LC3B	ENSG00000140941.14	ENST00000650688.1:ENST00000570189.5:ENST00000565788.1:ENST00000268607.10:ENST00000564844.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	33	2	4.06299	4.49862	4.93425	0.0559439	0.00281048	0.165463	0.0488779
chr6	83174587	83174687	3145681	0	-	0.34	(0.32,0.35]	chr6	293268	1	SS3_PROX	SS3_PROX:INTRON	PGM3	ENSG00000013375.16	ENST00000513973.6:ENST00000512866.5:ENST00000650640.1:ENST00000616566.5:ENST00000283977.9:ENST00000651425.1:ENST00000651698.1:ENST00000650642.1:ENST00000651204.1:ENST00000652222.1:ENST00000506587.5:ENST00000509219.2:ENST00000652468.1:ENST00000507404.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	33	2	4.06299	4.49862	4.93425	0.0559439	0.00281048	0.165463	0.0488779
chr3	187038191	187038291	1587264	0	+	0.43	(0.408,0.44]	chr3	164366	4	SS3_PROX	SS3_PROX:INTRON	ST6GAL1	ENSG00000073849.16	ENST00000169298.8:ENST00000457772.6:ENST00000455441.5:ENST00000427315.5:ENST00000677292.1:ENST00000458216.5:ENST00000430309.5:ENST00000417392.5:ENST00000438590.5:ENST00000448408.5:ENST00000676633.1:ENST00000440338.5:ENST00000448044.5:ENST00000416235.6:ENST00000423451.5:ENST00000446170.1	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	3.97679	4.4985349999999995	5.02028	0.0299485	0.00303216	0.142135	0.0493883
chr6	89663726	89663813	3160369	0	-	0.436782	(0.408,0.44]	chr6	294437	4	INTRON	INTRON	MDN1	ENSG00000112159.12	ENST00000369393.8:ENST00000629399.2	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	3.97679	4.4985349999999995	5.02028	0.0299485	0.00303216	0.142135	0.0493883
chr7	77550980	77551079	3342150	0	+	0.252525	[0,0.28]	chr7	311312	48	INTRON	INTRON	PTPN12	ENSG00000127947.16	ENST00000248594.11:ENST00000460731.5:ENST00000523952.5:ENST00000433369.6:ENST00000415482.6:ENST00000435495.6:ENST00000418110.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	86	2	3.01287	4.498245	5.98362	0.0115634	1.23405e-4	0.0889104	0.00949832
chr4	34324730	34324830	2125553	0	-	0.27	[0,0.28]	chr4	209578	551	INTRON	INTRON	LINC02484	ENSG00000248685.6	ENST00000658479.1	lncRNA	lncRNA	lncRNA	lncRNA	2	105	2	2.96015	4.497905	6.03566	0.00161799	5.43045e-4	0.0369252	0.0215026
chr1	1641300	1641387	360417	0	-	0.517241	(0.515,0.57]	chr1	41899	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CDK11B	ENSG00000248333.9	ENST00000341832.11:ENST00000407249.7:ENST00000340677.9:ENST00000611150.3:ENST00000615951.4:ENST00000626918.2:ENST00000629289.2:ENST00000629312.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	58	2	3.42644	4.497755	5.56907	0.00106731	1.36543e-4	0.0300133	0.0106702
chr15	72563800	72563900	6060063	0	+	0.36	(0.35,0.378]	chr15	576893	3	SS5_PROX	SS5_PROX:INTRON	ARIH1	ENSG00000166233.15	ENST00000379887.9:ENST00000561987.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	33	2	4.07186	4.497705	4.92355	0.0279478	0.00573514	0.137011	0.0657377
chr15	95695783	95695883	6108925	0	+	0.37	(0.35,0.378]	chr15	581775	124	INTRON	INTRON	ENSG00000275016	ENSG00000275016.5	ENST00000612595.2:ENST00000661571.1:ENST00000614344.5:ENST00000666682.1:ENST00000663174.1:ENST00000661536.1:ENST00000615194.1:ENST00000667774.1:ENST00000616588.4:ENST00000656202.1:ENST00000666386.1:ENST00000611285.1	lncRNA	lncRNA	lncRNA	lncRNA	0	33	2	4.07186	4.497705	4.92355	0.0279478	0.00573514	0.137011	0.0657377
chr1	193034454	193034554	612619	0	-	0.29	(0.28,0.32]	chr1	72474	44	INTRON	INTRON	UCHL5	ENSG00000116750.14	ENST00000367455.8:ENST00000367454.6:ENST00000367450.7:ENST00000367451.8:ENST00000367449.5:ENST00000367448.5:ENST00000421683.1	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.12807	4.49769	4.86731	0.0338135	0.0116253	0.146709	0.0889104
chr10	74273904	74274004	4456998	0	+	0.3	(0.28,0.32]	chr10	411553	305	INTRON	INTRON	ADK	ENSG00000156110.15	ENST00000672429.1:ENST00000539909.6:ENST00000286621.7:ENST00000673352.1:ENST00000673310.1:ENST00000672920.1:ENST00000672394.1:ENST00000372734.5:ENST00000673027.1:ENST00000541550.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	34	2	4.12807	4.49769	4.86731	0.0338135	0.0116253	0.146709	0.0889104
chr11	5412564	5412664	4897345	0	-	0.52	(0.515,0.57]	chr11	459187	653	INTRON	INTRON	HBG2:ENSG00000239920:HBE1:OR51B5	ENSG00000196565.15:ENSG00000239920.2:ENSG00000213931.7:ENSG00000167355.8	ENST00000380252.6:ENST00000380259.7:ENST00000292896.3:ENST00000380237.5:ENST00000420726.6:ENST00000420465.6:ENST00000415970.6:ENST00000418729.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:nonsense_mediated_decay:processed_transcript	2	82	2	3.25212	4.49764	5.74316	2.5577e-4	2.06122e-5	0.0148225	0.00352433
chr1	2256856	2256956	2452	0	+	0.62	(0.57,1]	chr1	557	84	INTRON	INTRON	SKI	ENSG00000157933.10	ENST00000378536.5:ENST00000508416.1:ENST00000478223.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	44	2	3.31859	4.49746	5.67633	0.00137292	4.81335e-6	0.0340241	0.00161664
chr1	39742425	39742524	79381	0	+	0.232323	[0,0.28]	chr1	10271	5	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	PPIE	ENSG00000084072.17	ENST00000470018.5:ENST00000485507.5:ENST00000324379.10:ENST00000356511.6:ENST00000495526.5:ENST00000482751.5:ENST00000372830.5:ENST00000372835.9:ENST00000470213.5:ENST00000497370.5:ENST00000474804.5:ENST00000475350.5:ENST00000480169.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	78	2	3.2621000000000002	4.49743	5.73276	0.00367113	0.00156565	0.056059199999999997	0.0360583
chr1	165737287	165737386	575662	0	-	0.323232	(0.32,0.35]	chr1	69834	88	INTRON	INTRON	TMCO1	ENSG00000143183.18	ENST00000612311.4:ENST00000367881.11:ENST00000580248.5:ENST00000464650.5:ENST00000476143.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	33	2	4.16186	4.497365	4.83287	0.026079	0.0095071	0.133676	0.0817766
chr15	40702326	40702426	6003252	0	+	0.35	(0.32,0.35]	chr15	571014	4	SS5_PROX	SS5_PROX:INTRON	RAD51	ENSG00000051180.17	ENST00000527860.5:ENST00000423169.6:ENST00000557850.5:ENST00000267868.8:ENST00000645673.2:ENST00000382643.7:ENST00000525066.5:ENST00000532743.6:ENST00000531277.2:ENST00000533741.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	33	2	4.16186	4.497365	4.83287	0.026079	0.0095071	0.133676	0.0817766
chr1	21690995	21691094	395911	0	-	0.545455	(0.515,0.57]	chr1	47211	5	INTRON	INTRON	USP48	ENSG00000090686.16	ENST00000400301.5:ENST00000308271.14:ENST00000374732.7:ENST00000529637.5:ENST00000464577.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	77	2	3.00693	4.497235	5.98754	7.26845e-4	1.57707e-5	0.0245647	0.00318411
chr5	138167295	138167364	2731303	0	-	0.347826	(0.32,0.35]	chr5	257140	2	INTRON	INTRON	BRD8	ENSG00000112983.18	ENST00000254900.10:ENST00000402931.5:ENST00000230901.9:ENST00000454473.5:ENST00000418329.5:ENST00000441656.5:ENST00000411594.6:ENST00000512140.5:ENST00000453824.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	92	2	3.05808	4.49721	5.93634	7.67153e-4	2.02056e-4	0.0254532	0.0129814
chr1	25822214	25822313	49162	0	+	0.464646	(0.44,0.476]	chr1	6114	8	UTR5	UTR5:EXON_MRNA:INTRON	MTFR1L	ENSG00000117640.18	ENST00000424294.5:ENST00000533762.5:ENST00000474295.5:ENST00000529116.5:ENST00000488327.6:ENST00000472643.5:ENST00000374303.7:ENST00000494293.1:ENST00000469815.5:ENST00000526894.5:ENST00000478284.5:ENST00000524618.5:ENST00000374307.9:ENST00000528624.5:ENST00000374301.7:ENST00000525713.5:ENST00000464008.6:ENST00000526158.5:ENST00000530599.5:ENST00000374300.7:ENST00000466284.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	63	2	3.45957	4.49698	5.53439	0.00106385	4.05863e-4	0.0300133	0.0185763
chrX	44980702	44980802	7649680	0	+	0.3	(0.28,0.32]	chrX	782744	36	INTRON	INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000675440.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000621147.5:ENST00000475233.1:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	75	2	3.83973	4.496655	5.15358	0.0052282	2.68965e-4	0.0633615	0.0145349
chr1	16317032	16317132	382265	0	-	0.49	(0.476,0.515]	chr1	44888	12	INTRON	INTRON	FBXO42	ENSG00000037637.11	ENST00000375592.8	protein_coding	protein_coding	protein_coding	protein_coding	1	63	2	3.53895	4.496425	5.4539	0.00075485700000000005	5.16081e-4	0.0251966	0.0208667
chr3	143017162	143017256	1529236	0	+	0.255319	[0,0.28]	chr3	159355	3	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	U2SURP	ENSG00000163714.18	ENST00000488497.7:ENST00000473835.7:ENST00000461591.5:ENST00000493598.6:ENST00000463563.6:ENST00000470400.5:ENST00000491827.1:ENST00000488587.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	108	2	3.29408	4.496370000000001	5.69866	0.00175225	3.71636e-4	0.0376491	0.0173669
chr1	201153482	201153582	619007	0	-	0.33	(0.32,0.35]	chr1	73355	3	SS5_PROX	SS5_PROX:INTRON	TMEM9	ENSG00000116857.17	ENST00000367333.6:ENST00000367334.9:ENST00000367330.6:ENST00000367332.5:ENST00000495205.1:ENST00000485839.6:ENST00000497582.5:ENST00000455367.5:ENST00000414605.2:ENST00000435310.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	32	2	4.273	4.49635	4.7197	0.0368357	0.00568521	0.138959	0.0678837
chr20	56416789	56416888	7287499	0	+	0.333333	(0.32,0.35]	chr20	741426	39	INTRON	INTRON	CASS4	ENSG00000087589.17	ENST00000360314.7:ENST00000679887.1:ENST00000434344.2:ENST00000497244.1:ENST00000679529.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	32	2	4.273	4.49635	4.7197	0.0368357	0.00568521	0.138959	0.0678837
chr21	38017416	38017516	7463055	0	-	0.34	(0.32,0.35]	chr21	760277	69	INTRON	INTRON	DSCR4	ENSG00000184029.9	ENST00000398948.5	lncRNA	lncRNA	lncRNA	lncRNA	0	32	2	4.273	4.49635	4.7197	0.0368357	0.00568521	0.138959	0.0678837
chr5	62562056	62562155	2364534	0	+	0.343434	(0.32,0.35]	chr5	228011	4	INTRON	INTRON	IPO11	ENSG00000086200.17	ENST00000424533.5:ENST00000325324.11:ENST00000409296.7:ENST00000511713.5:ENST00000511133.1:ENST00000413749.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	32	2	4.273	4.49635	4.7197	0.0368357	0.00568521	0.138959	0.0678837
chr5	173137404	173137503	2549511	0	+	0.343434	(0.32,0.35]	chr5	243364	38	UTR3	UTR3:EXON_MRNA	CREBRF	ENSG00000164463.12	ENST00000296953.6	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.273	4.49635	4.7197	0.0368357	0.00568521	0.138959	0.0678837
chr6	135341680	135341780	3226568	0	-	0.34	(0.32,0.35]	chr6	299946	168	INTRON	INTRON	AHI1	ENSG00000135541.22	ENST00000681022.1:ENST00000681841.1:ENST00000680965.1:ENST00000681522.1:ENST00000681365.1:ENST00000681332.1:ENST00000680826.1:ENST00000679711.1:ENST00000527681.2:ENST00000367800.8:ENST00000265602.11:ENST00000681718.1:ENST00000679672.1:ENST00000681828.1:ENST00000679668.1:ENST00000680840.1:ENST00000457866.6:ENST00000679925.1:ENST00000680561.1:ENST00000679742.1:ENST00000681860.1:ENST00000680119.1:ENST00000680337.1:ENST00000681340.1:ENST00000679589.1:ENST00000679890.1:ENST00000679434.1:ENST00000475846.6:ENST00000679943.1:ENST00000681057.1:ENST00000681301.1:ENST00000681488.1:ENST00000679450.1:ENST00000681756.1:ENST00000681670.1:ENST00000679476.1:ENST00000679622.1:ENST00000367799.7:ENST00000680656.1:ENST00000680278.1:ENST00000680184.1:ENST00000531788.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	32	2	4.273	4.49635	4.7197	0.0368357	0.00568521	0.138959	0.0678837
chr6	167854072	167854172	3034609	0	+	0.35	(0.32,0.35]	chr6	282711	258	INTRON	INTRON	AFDN	ENSG00000130396.21	ENST00000683244.1:ENST00000400825.8:ENST00000351017.9:ENST00000344191.8:ENST00000392112.5:ENST00000392108.7:ENST00000400824.8:ENST00000400822.7:ENST00000447894.6:ENST00000366809.6:ENST00000366806.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	32	2	4.273	4.49635	4.7197	0.0368357	0.00568521	0.138959	0.0678837
chr7	67135592	67135692	3328040	0	+	0.34	(0.32,0.35]	chr7	309460	176	INTRON	INTRON	TYW1	ENSG00000198874.14	ENST00000359626.10:ENST00000361660.8:ENST00000495971.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	32	2	4.273	4.49635	4.7197	0.0368357	0.00568521	0.138959	0.0678837
chr1	52442904	52443003	457433	0	-	0.323232	(0.32,0.35]	chr1	54961	42	INTRON	INTRON	TUT4	ENSG00000134744.14	ENST00000371544.7:ENST00000257177.9:ENST00000531722.5:ENST00000474453.6:ENST00000469810.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	32	2	4.37269	4.49579	4.61889	0.0166646	0.0154102	0.108569	0.102621
chr10	68436110	68436210	4639402	0	-	0.35	(0.32,0.35]	chr10	426680	32	INTRON	INTRON	DNA2	ENSG00000138346.15	ENST00000358410.8:ENST00000551118.6:ENST00000399179.6:ENST00000399180.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	32	2	4.37269	4.49579	4.61889	0.0166646	0.0154102	0.108569	0.102621
chr17	47086246	47086346	6788503	0	-	0.35	(0.32,0.35]	chr17	669501	35	INTRON	INTRON	ENSG00000262879	ENSG00000262879.6	ENST00000668245.1:ENST00000573341.6:ENST00000572864.5:ENST00000576938.1:ENST00000574741.1	lncRNA	lncRNA	lncRNA	lncRNA	0	32	2	4.37269	4.49579	4.61889	0.0166646	0.0154102	0.108569	0.102621
chr19	10181840	10181940	7134747	0	-	0.35	(0.32,0.35]	chr19	719252	4	SS5_PROX	SS5_PROX:INTRON	DNMT1	ENSG00000130816.17	ENST00000340748.8:ENST00000359526.9:ENST00000592705.5:ENST00000679103.1:ENST00000677634.1:ENST00000676820.1:ENST00000677250.1:ENST00000677013.1:ENST00000677685.1:ENST00000676610.1:ENST00000678804.1:ENST00000679313.1:ENST00000677946.1:ENST00000586988.5:ENST00000588952.5:ENST00000588118.5:ENST00000592342.5:ENST00000592054.5:ENST00000586800.5:ENST00000586086.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	32	2	4.37269	4.49579	4.61889	0.0166646	0.0154102	0.108569	0.102621
chr2	30469509	30469609	727042	0	+	0.34	(0.32,0.35]	chr2	83971	94	INTRON	INTRON	LCLAT1	ENSG00000172954.14	ENST00000466477.5:ENST00000465200.5:ENST00000319406.8:ENST00000379509.8:ENST00000491680.6:ENST00000488144.5:ENST00000465538.5:ENST00000309052.8:ENST00000478015.5:ENST00000476038.5:ENST00000497423.1:ENST00000476535.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	32	2	4.37269	4.49579	4.61889	0.0166646	0.0154102	0.108569	0.102621
chr6	125168805	125168905	2953295	0	+	0.34	(0.32,0.35]	chr6	277761	139	INTRON	INTRON	TPD52L1	ENSG00000111907.21	ENST00000534368.5:ENST00000304877.17:ENST00000368402.9:ENST00000368388.6:ENST00000534000.6:ENST00000527711.5:ENST00000392483.6:ENST00000528193.5:ENST00000532429.5:ENST00000532978.5:ENST00000534199.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	32	2	4.37269	4.49579	4.61889	0.0166646	0.0154102	0.108569	0.102621
chr9	122855083	122855183	4338108	0	-	0.34	(0.32,0.35]	chr9	398707	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RC3H2	ENSG00000056586.16	ENST00000357244.7:ENST00000373670.5:ENST00000498479.5:ENST00000423239.6:ENST00000398671.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	32	2	4.37269	4.49579	4.61889	0.0166646	0.0154102	0.108569	0.102621
chr4	10095170	10095261	2107204	0	-	0.571429	(0.57,1]	chr4	208459	4	INTRON	INTRON	WDR1	ENSG00000071127.17	ENST00000499869.7:ENST00000382451.6:ENST00000382452.6:ENST00000502702.5:ENST00000505543.5:ENST00000508949.5:ENST00000510848.5:ENST00000508079.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	60	2	3.71526	4.495635	5.27601	3.73525e-5	7.50551e-6	0.00489903	0.00205959
chr14	90805992	90806091	5951642	0	-	0.323232	(0.32,0.35]	chr14	565050	193	INTRON	INTRON	TTC7B	ENSG00000165914.15	ENST00000328459.11:ENST00000553948.1	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	3.91486	4.4955750000000005	5.07629	0.0450361	0.00468114	0.163255	0.0600108
chr17	21622296	21622396	6578376	0	+	0.53	(0.515,0.57]	chr17	639543	74	INTRON	INTRON	ENSG00000260157	ENSG00000260157.3	ENST00000618784.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	1	59	2	3.88616	4.4953199999999995	5.10448	0.0010345	1.07993e-4	0.029231300000000002	0.00878438
chr15	75930466	75930561	6065933	0	+	0.378947	(0.378,0.408]	chr15	577661	5	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	FBXO22	ENSG00000167196.14	ENST00000569749.5:ENST00000308275.8:ENST00000569022.1:ENST00000453211.6:ENST00000565036.5:ENST00000561885.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	65	2	3.27907	4.495089999999999	5.71111	0.0023379	2.59738e-4	0.0442989	0.0148796
chr5	78276701	78276801	2650967	0	-	0.48	(0.476,0.515]	chr5	251795	38	INTRON	INTRON	AP3B1	ENSG00000132842.15	ENST00000519295.6:ENST00000255194.11:ENST00000695515.1:ENST00000695454.1:ENST00000695511.1:ENST00000695453.1:ENST00000695455.1:ENST00000695513.1:ENST00000695488.1:ENST00000695450.1:ENST00000695507.1:ENST00000695512.1:ENST00000695510.1:ENST00000695451.1:ENST00000695447.1:ENST00000695505.1:ENST00000519888.6:ENST00000695514.1:ENST00000517940.2:ENST00000517561.2:ENST00000695452.1:ENST00000695449.1:ENST00000695540.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	31	2	4.13586	4.4948250000000005	4.85379	0.031846	0.00234214	0.13151	0.0442989
chr15	63825125	63825225	6200817	0	-	0.48	(0.476,0.515]	chr15	591445	442	INTRON	INTRON	HERC1	ENSG00000103657.14	ENST00000443617.7:ENST00000561400.1:ENST00000559886.1:ENST00000558532.1:ENST00000560462.1:ENST00000560316.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	90	2	3.0883	4.494825	5.90135	7.31567e-4	2.02515e-5	0.0248722	0.00348937
chr7	157363370	157363470	3455567	0	+	0.4	(0.378,0.408]	chr7	323064	1	SS5_PROX	SS5_PROX:INTRON	DNAJB6	ENSG00000105993.15	ENST00000441561.5:ENST00000429029.6:ENST00000262177.9:ENST00000486083.6:ENST00000417758.5:ENST00000459889.5:ENST00000443280.5:ENST00000488001.5:ENST00000441291.5:ENST00000437030.5:ENST00000412557.5:ENST00000453383.5:ENST00000634080.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	71	2	4.17973	4.494705	4.80968	0.00679828	2.85856e-5	0.0711802	0.00423319
chr14	96805963	96806063	5810940	0	+	0.31	(0.28,0.32]	chr14	551001	58	INTRON	INTRON	VRK1	ENSG00000100749.9	ENST00000553683.2:ENST00000680538.1:ENST00000555351.2:ENST00000681195.1:ENST00000681524.1:ENST00000680084.1:ENST00000679533.1:ENST00000681598.1:ENST00000679727.1:ENST00000679758.1:ENST00000680509.1:ENST00000557222.6:ENST00000679977.1:ENST00000680387.1:ENST00000680335.1:ENST00000680683.1:ENST00000681474.1:ENST00000216639.8:ENST00000681363.1:ENST00000681538.1:ENST00000679736.1:ENST00000681176.1:ENST00000680922.1:ENST00000679903.1:ENST00000557352.2:ENST00000681101.1:ENST00000681419.1:ENST00000680348.1:ENST00000679941.1:ENST00000679452.1:ENST00000680849.1:ENST00000679770.1:ENST00000681493.1:ENST00000681778.1:ENST00000680993.1:ENST00000681355.1:ENST00000681695.1:ENST00000681344.1:ENST00000680007.1:ENST00000679918.1:ENST00000681785.1:ENST00000679816.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	72	2	3.47062	4.49465	5.51868	0.00162747	0.00137212	0.0367966	0.0340241
chr11	10767144	10767238	4734667	0	+	0.276596	[0,0.28]	chr11	438494	2	EXON_MRNA	EXON_MRNA:INTRON	CTR9	ENSG00000198730.9	ENST00000361367.7:ENST00000526874.5:ENST00000529355.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	79	2	3.63981	4.4943550000000005	5.3489	0.00514751	8.51767e-4	0.062965	0.0264928
chr14	67897604	67897704	5766151	0	+	0.43	(0.408,0.44]	chr14	547058	100	INTRON	INTRON	RAD51B	ENSG00000182185.19	ENST00000487861.5:ENST00000471583.6:ENST00000479335.5:ENST00000487270.5:ENST00000488612.5:ENST00000553595.5:ENST00000497460.5:ENST00000492236.5:ENST00000554244.5:ENST00000478014.5:ENST00000469165.6:ENST00000460526.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	63	2	3.46104	4.4943100000000005	5.52758	0.00105552	4.54953e-4	0.0299229	0.0196892
chr10	25470382	25470481	4411175	0	+	0.464646	(0.44,0.476]	chr10	406856	33	INTRON	INTRON	GPR158	ENSG00000151025.11	ENST00000650135.1:ENST00000376351.4:ENST00000482641.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	63	2	3.41176	4.494155	5.57655	0.00130987	3.3967e-4	0.0333932	0.0170719
chr3	43693803	43693903	1410201	0	+	0.38	(0.378,0.408]	chr3	147907	19	INTRON	INTRON	ABHD5	ENSG00000011198.10	ENST00000643520.1:ENST00000456453.5:ENST00000458276.7:ENST00000486764.1:ENST00000649763.1:ENST00000643140.1:ENST00000643500.1:ENST00000644371.2:ENST00000013894.3:ENST00000646378.1:ENST00000643477.1:ENST00000646799.1:ENST00000454293.2:ENST00000642351.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	111	2	3.43414	4.49401	5.55388	5.01023e-4	1.53753e-5	0.0206993	0.00294585
chr1	52363335	52363424	456707	0	-	0.483146	(0.476,0.515]	chr1	54821	2	INTRON	INTRON	CC2D1B	ENSG00000154222.15	ENST00000371586.6:ENST00000284376.8:ENST00000491136.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	31	2	4.21964	4.493955	4.76827	0.0167715	0.00600704	0.110511	0.0674604
chr1	243189218	243189318	668051	0	-	0.49	(0.476,0.515]	chr1	79286	24	INTRON	INTRON	CEP170	ENSG00000143702.16	ENST00000366544.5:ENST00000366543.5:ENST00000366542.6:ENST00000336415.8	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.21964	4.493955	4.76827	0.0167715	0.00600704	0.110511	0.0674604
chr19	49183512	49183612	7089307	0	+	0.48	(0.476,0.515]	chr19	709808	3	SS5_PROX	SS5_PROX:INTRON	TRPM4	ENSG00000130529.16	ENST00000598697.5:ENST00000252826.10:ENST00000595519.5:ENST00000427978.6:ENST00000598502.5:ENST00000596338.5:ENST00000595071.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	31	2	4.21964	4.493955	4.76827	0.0167715	0.00600704	0.110511	0.0674604
chr6	37434739	37434835	2856516	0	+	0.489583	(0.476,0.515]	chr6	270082	10	INTRON	INTRON	CMTR1	ENSG00000137200.13	ENST00000471097.1:ENST00000455891.5:ENST00000373451.9	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	31	2	4.21964	4.493955	4.76827	0.0167715	0.00600704	0.110511	0.0674604
chr7	72924106	72924204	3330241	0	+	0.479592	(0.476,0.515]	chr7	309573	40	INTRON	INTRON	POM121	ENSG00000196313.13	ENST00000627934.3:ENST00000395270.5	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.21964	4.493955	4.76827	0.0167715	0.00600704	0.110511	0.0674604
chr7	99511552	99511652	3362447	0	+	0.51	(0.476,0.515]	chr7	314086	47	INTRON	INTRON	ZKSCAN5	ENSG00000196652.12	ENST00000326775.10:ENST00000451158.5:ENST00000394170.6:ENST00000454175.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	31	2	4.21964	4.493955	4.76827	0.0167715	0.00600704	0.110511	0.0674604
chr19	1376771	1376868	6994937	0	+	0.402062	(0.378,0.408]	chr19	693116	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	PWWP3A	ENSG00000160953.17	ENST00000591337.7:ENST00000591806.6:ENST00000652273.1:ENST00000415183.7:ENST00000587460.6:ENST00000586067.1:ENST00000591627.5:ENST00000591453.2:ENST00000588888.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	194	2	4.14766	4.49386	4.84006	2.88205e-6	4.20488e-7	0.00119813	3.37394e-4
chr11	59640681	59640781	4954655	0	-	0.49	(0.476,0.515]	chr11	465257	9	INTRON	INTRON	PATL1	ENSG00000166889.14	ENST00000300146.10	protein_coding	protein_coding	protein_coding	protein_coding	1	71	2	2.82673	4.493545	6.16036	0.0134403	4.57104e-6	0.0946278	0.00144313
chr17	47147844	47147942	6788962	0	-	0.5	(0.476,0.515]	chr17	669573	35	INTRON	INTRON	CDC27	ENSG00000004897.12	ENST00000066544.8:ENST00000531206.5:ENST00000533415.5:ENST00000527547.5:ENST00000526866.5:ENST00000525495.6:ENST00000574304.5:ENST00000575830.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	123	2	2.46178	4.493405	6.52503	0.00159317	4.55033e-7	0.0364566	3.5553e-4
chr7	105345459	105345559	3603471	0	-	0.27	[0,0.28]	chr7	336161	385	INTRON	INTRON	SRPK2	ENSG00000135250.17	ENST00000393651.8:ENST00000482897.5:ENST00000460391.5:ENST00000462282.5:ENST00000465112.5:ENST00000482862.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	87	2	3.4206	4.493355	5.56611	0.00322364	7.02173e-4	0.0507087	0.0241881
chr15	41249825	41249924	6004048	0	+	0.393939	(0.378,0.408]	chr15	571196	57	INTRON	INTRON	CHP1	ENSG00000187446.12	ENST00000558351.5:ENST00000560411.5:ENST00000560784.5:ENST00000392151.6:ENST00000561280.5:ENST00000334660.10:ENST00000560397.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	31	2	4.21563	4.49334	4.77105	0.0315429	0.00330823	0.13151	0.0527031
chr18	46087844	46087932	6965386	0	-	0.386364	(0.378,0.408]	chr18	689379	5	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ATP5F1A	ENSG00000152234.16	ENST00000398752.11:ENST00000282050.6:ENST00000593152.6:ENST00000586592.5:ENST00000590665.5:ENST00000590156.5:ENST00000586523.1:ENST00000592364.5:ENST00000589252.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	31	2	4.21563	4.49334	4.77105	0.0315429	0.00330823	0.13151	0.0527031
chr12	25228991	25229091	5298162	0	-	0.46	(0.44,0.476]	chr12	503932	1	SS3_PROX	SS3_PROX:INTRON	KRAS	ENSG00000133703.14	ENST00000256078.10:ENST00000311936.8:ENST00000686877.1:ENST00000685328.1:ENST00000693229.1:ENST00000687356.1:ENST00000692768.1:ENST00000688940.1:ENST00000690804.1:ENST00000557334.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	31	2	4.12843	4.4933	4.85817	0.0337192	0.00223254	0.134145	0.0435144
chr20	47567489	47567588	7281653	0	+	0.444444	(0.44,0.476]	chr20	740469	651	INTRON	INTRON	NCOA3	ENSG00000124151.19	ENST00000371998.8:ENST00000372004.7:ENST00000371997.3	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.12843	4.4933	4.85817	0.0337192	0.00223254	0.134145	0.0435144
chr6	111295285	111295367	2940139	0	+	0.47561	(0.44,0.476]	chr6	276925	2	SS3_PROX	SS3_PROX:INTRON	MFSD4B	ENSG00000173214.7	ENST00000673446.1:ENST00000673245.1:ENST00000666581.2	protein_coding	processed_transcript	protein_coding	processed_transcript	0	31	2	4.12843	4.4933	4.85817	0.0337192	0.00223254	0.134145	0.0435144
chr1	1615018	1615115	360337	0	-	0.402062	(0.378,0.408]	chr1	41858	14	EXON_LNCRNA	EXON_LNCRNA	ENSG00000272106	ENSG00000272106.1	ENST00000607222.1	lncRNA	lncRNA	lncRNA	lncRNA	1	64	2	3.47377	4.492755	5.51174	0.00103087	5.93655e-4	0.0294094	0.0225024
chr1	204398089	204398189	621899	0	-	0.39	(0.378,0.408]	chr1	73925	17	EXON_MRNA	EXON_MRNA	PPP1R15B	ENSG00000158615.10	ENST00000687263.1	protein_coding	retained_intron	protein_coding	retained_intron	0	31	2	4.32174	4.49256	4.66338	0.0132362	0.0103469	0.0999551	0.0850389
chr10	74279698	74279798	4457056	0	+	0.4	(0.378,0.408]	chr10	411553	363	INTRON	INTRON	ADK	ENSG00000156110.15	ENST00000672429.1:ENST00000539909.6:ENST00000286621.7:ENST00000673352.1:ENST00000673310.1:ENST00000672920.1:ENST00000672394.1:ENST00000372734.5:ENST00000673027.1:ENST00000541550.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	31	2	4.32174	4.49256	4.66338	0.0132362	0.0103469	0.0999551	0.0850389
chr12	93430573	93430672	5388125	0	-	0.40404	(0.378,0.408]	chr12	513727	58	INTRON	INTRON	UBE2N	ENSG00000177889.10	ENST00000318066.7:ENST00000550657.1:ENST00000549833.1:ENST00000549490.1:ENST00000552442.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	31	2	4.32174	4.49256	4.66338	0.0132362	0.0103469	0.0999551	0.0850389
chr17	66532342	66532442	6664596	0	+	0.38	(0.378,0.408]	chr17	650332	357	INTRON	INTRON	PRKCA	ENSG00000154229.12	ENST00000413366.8:ENST00000578063.5:ENST00000284384.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	31	2	4.32174	4.49256	4.66338	0.0132362	0.0103469	0.0999551	0.0850389
chr21	25601567	25601667	7435603	0	-	0.38	(0.378,0.408]	chr21	758181	1	SS3_PROX	SS3_PROX:INTRON	MRPL39	ENSG00000154719.14	ENST00000307301.11:ENST00000352957.9:ENST00000419219.1	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.32174	4.49256	4.66338	0.0132362	0.0103469	0.0999551	0.0850389
chr4	87434601	87434694	1996011	0	+	0.387097	(0.378,0.408]	chr4	199162	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NUDT9	ENSG00000170502.13	ENST00000302174.9:ENST00000512216.5:ENST00000514345.1:ENST00000473942.5:ENST00000514227.1:ENST00000440591.6:ENST00000502933.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	31	2	4.32174	4.49256	4.66338	0.0132362	0.0103469	0.0999551	0.0850389
chr6	31733065	31733165	3079392	0	-	0.4	(0.378,0.408]	chr6	287040	1	SS5_PROX	SS5_PROX:INTRON	CLIC1	ENSG00000213719.8	ENST00000395892.5:ENST00000375780.6:ENST00000375779.6:ENST00000616760.1:ENST00000375784.8	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.32174	4.49256	4.66338	0.0132362	0.0103469	0.0999551	0.0850389
chr8	130011818	130011917	4063887	0	-	0.383838	(0.378,0.408]	chr8	369848	30	INTRON	INTRON	CYRIB	ENSG00000153310.21	ENST00000694912.1:ENST00000523288.5:ENST00000519110.5:ENST00000401979.6:ENST00000523509.5:ENST00000517654.5:ENST00000518879.5:ENST00000522702.5:ENST00000521223.5:ENST00000518283.5:ENST00000523993.5:ENST00000519020.5:ENST00000518167.5:ENST00000522361.1:ENST00000523514.1:ENST00000518285.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	31	2	4.32174	4.49256	4.66338	0.0132362	0.0103469	0.0999551	0.0850389
chr5	36902877	36902977	2338691	0	+	0.3	(0.28,0.32]	chr5	225949	165	INTRON	INTRON	NIPBL	ENSG00000164190.19	ENST00000282516.13:ENST00000448238.2:ENST00000652901.1	protein_coding	protein_coding	protein_coding	protein_coding	1	73	2	3.68354	4.492535	5.30153	0.00332518	5.5135e-4	0.0512081	0.0213455
chr13	110712231	110712316	5650188	0	-	0.470588	(0.44,0.476]	chr13	538321	1	EXON_LNCRNA	EXON_LNCRNA:INTRON	CARS2	ENSG00000134905.17	ENST00000535398.5:ENST00000544488.5:ENST00000542126.5:ENST00000540629.5:ENST00000537412.5:ENST00000485188.1	protein_coding	processed_transcript	protein_coding	processed_transcript	0	31	2	4.22393	4.492305	4.76068	0.0162322	0.00653414	0.109464	0.0699952
chr17	42961851	42961925	6774701	0	-	0.445946	(0.44,0.476]	chr17	667588	1	SS5_PROX	SS5_PROX:INTRON	PTGES3L-AARSD1:AARSD1	ENSG00000108825.18:ENSG00000266967.7	ENST00000360221.8:ENST00000427569.7:ENST00000409399.6:ENST00000409103.5:ENST00000421990.7:ENST00000423601.2:ENST00000450475.5:ENST00000441280.7:ENST00000430739.5:ENST00000591910.5:ENST00000436545.5:ENST00000416949.5:ENST00000492036.1:ENST00000452752.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	31	2	4.22393	4.492305	4.76068	0.0162322	0.00653414	0.109464	0.0699952
chr7	92537330	92537429	3354600	0	+	0.454545	(0.44,0.476]	chr7	312666	5	UTR3	UTR3:EXON_MRNA	RBM48	ENSG00000127993.16	ENST00000481551.5:ENST00000265732.10	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.22393	4.492305	4.76068	0.0162322	0.00653414	0.109464	0.0699952
chr9	93557247	93557326	4159114	0	+	0.455696	(0.44,0.476]	chr9	379198	3	INTRON	INTRON	FAM120A	ENSG00000048828.17	ENST00000277165.11:ENST00000427765.1:ENST00000652239.1	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.22393	4.492305	4.76068	0.0162322	0.00653414	0.109464	0.0699952
chr6	53326758	53326858	3107967	0	-	0.53	(0.515,0.57]	chr6	291049	307	INTRON	INTRON	ELOVL5	ENSG00000012660.14	ENST00000370918.8:ENST00000542638.5:ENST00000304434.11:ENST00000485336.5:ENST00000465983.5:ENST00000486973.1:ENST00000370913.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	92	2	2.72642	4.492095	6.25777	7.31116e-4	3.29927e-6	0.0246497	0.00128575
chr1	174465344	174465444	260185	0	+	0.53	(0.515,0.57]	chr1	30824	159	INTRON	INTRON	RABGAP1L	ENSG00000152061.24	ENST00000357444.10:ENST00000251507.8:ENST00000681986.1:ENST00000367690.5:ENST00000526253.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	58	2	3.37125	4.4918949999999995	5.61254	0.00136343	1.10757e-4	0.0339121	0.00945003
chr16	88718274	88718367	6539490	0	-	0.55914	(0.515,0.57]	chr16	633839	6	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	PIEZO1	ENSG00000103335.22	ENST00000301015.14:ENST00000419505.5:ENST00000484567.6:ENST00000495568.7:ENST00000466823.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	58	2	3.37125	4.4918949999999995	5.61254	0.00136343	1.10757e-4	0.0339121	0.00945003
chr6	33648904	33649004	2847555	0	+	0.54	(0.515,0.57]	chr6	268791	80	INTRON	INTRON	ITPR3	ENSG00000096433.11	ENST00000374316.9:ENST00000605930.3	protein_coding	protein_coding	protein_coding	protein_coding	1	58	2	3.37125	4.4918949999999995	5.61254	0.00136343	1.10757e-4	0.0339121	0.00945003
chr12	24868036	24868136	5297094	0	-	0.38	(0.378,0.408]	chr12	503853	177	INTRON	INTRON	BCAT1	ENSG00000060982.15	ENST00000261192.12:ENST00000538118.5:ENST00000342945.9:ENST00000539282.5:ENST00000539780.5:ENST00000544418.1:ENST00000612790.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:processed_transcript	1	70	2	3.05502	4.4918700000000005	5.92872	0.00689519	1.93094e-5	0.0717484	0.00337681
chr1	1474182	1474282	1589	0	+	0.5	(0.476,0.515]	chr1	364	17	INTRON	INTRON	ATAD3B	ENSG00000160072.20	ENST00000673477.1:ENST00000308647.8	protein_coding	protein_coding	protein_coding	protein_coding	4	117	2	2.37295	4.49174	6.61053	0.00193884	1.50009e-6	0.0409025	8.03394e-4
chr10	22622878	22622978	4579580	0	-	0.36	(0.35,0.378]	chr10	422018	128	INTRON	INTRON	PIP4K2A	ENSG00000150867.14	ENST00000376573.9:ENST00000545335.5	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.08816	4.491695	4.89523	0.046021	0.00253947	0.149888	0.0465056
chr17	37446067	37446167	6604028	0	+	0.37	(0.35,0.378]	chr17	642800	9	INTRON	INTRON	TADA2A	ENSG00000276234.5	ENST00000615182.5:ENST00000620628.4:ENST00000614122.4:ENST00000620367.4:ENST00000612272.4:ENST00000615328.4:ENST00000620086.4:ENST00000619777.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	32	2	4.08816	4.491695	4.89523	0.046021	0.00253947	0.149888	0.0465056
chr3	179169375	179169474	1566011	0	+	0.373737	(0.35,0.378]	chr3	161904	193	INTRON	INTRON	PIK3CA	ENSG00000121879.6	ENST00000477735.1:ENST00000263967.4:ENST00000643187.1:ENST00000675786.1:ENST00000468036.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	32	2	4.08816	4.491695	4.89523	0.046021	0.00253947	0.149888	0.0465056
chr5	139322206	139322284	2499680	0	+	0.358974	(0.35,0.378]	chr5	238961	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MATR3	ENSG00000280987.4:ENSG00000015479.20	ENST00000509990.5:ENST00000361059.7:ENST00000394800.6:ENST00000502929.5:ENST00000504203.5:ENST00000502499.5:ENST00000510056.5:ENST00000394805.8:ENST00000503811.5:ENST00000618441.5:ENST00000504643.5:ENST00000505625.5:ENST00000502422.5:ENST00000502944.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	32	2	4.08816	4.491695	4.89523	0.046021	0.00253947	0.149888	0.0465056
chr21	43921712	43921812	7414358	0	+	0.45	(0.44,0.476]	chr21	755702	49	INTRON	INTRON	AGPAT3	ENSG00000160216.21	ENST00000291572.13:ENST00000448287.5:ENST00000398061.5:ENST00000327505.6:ENST00000445582.5	protein_coding	protein_coding	protein_coding	protein_coding	1	67	2	3.39322	4.491555	5.58989	0.00187283	9.76499e-5	0.0390476	0.00830626
chr1	77638651	77638750	493019	0	-	0.222222	[0,0.28]	chr1	58300	49	INTRON	INTRON	ZZZ3	ENSG00000036549.13	ENST00000370801.8:ENST00000370798.5:ENST00000433749.5:ENST00000414381.5:ENST00000463166.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	34	2	4.20106	4.4912399999999995	4.78142	0.0695895	0.00943974	0.184298	0.0861183
chr1	92755415	92755515	507872	0	-	0.25	[0,0.28]	chr1	59886	184	INTRON	INTRON	EVI5	ENSG00000067208.16	ENST00000370331.5:ENST00000540033.2:ENST00000684568.2:ENST00000474806.1:ENST00000466778.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	34	2	4.20106	4.4912399999999995	4.78142	0.0695895	0.00943974	0.184298	0.0861183
chr10	22680041	22680141	4580157	0	-	0.24	[0,0.28]	chr10	422040	178	INTRON	INTRON	PIP4K2A	ENSG00000150867.14	ENST00000376573.9:ENST00000545335.5:ENST00000605011.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	34	2	4.20106	4.4912399999999995	4.78142	0.0695895	0.00943974	0.184298	0.0861183
chr12	65246325	65246421	5157895	0	+	0.260417	[0,0.28]	chr12	488294	1	UTR3	UTR3:EXON_MRNA	LEMD3	ENSG00000174106.3	ENST00000308330.3:ENST00000539442.1:ENST00000545026.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	34	2	4.20106	4.4912399999999995	4.78142	0.0695895	0.00943974	0.184298	0.0861183
chr16	68196034	68196133	6371346	0	+	0.242424	[0,0.28]	chr16	612248	39	INTRON	INTRON	NFATC3	ENSG00000072736.19	ENST00000563319.5:ENST00000569766.5:ENST00000566301.5:ENST00000575270.5:ENST00000346183.8:ENST00000349223.9:ENST00000329524.8:ENST00000562926.5:ENST00000570212.5:ENST00000563796.5:ENST00000567152.5:ENST00000563288.5:ENST00000535127.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	34	2	4.20106	4.4912399999999995	4.78142	0.0695895	0.00943974	0.184298	0.0861183
chr3	101324397	101324493	1756659	0	-	0.270833	[0,0.28]	chr3	178203	3	UTR3	UTR3:EXON_MRNA	SENP7	ENSG00000138468.16	ENST00000394095.7:ENST00000314261.11:ENST00000394094.6:ENST00000394091.5	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.20106	4.4912399999999995	4.78142	0.0695895	0.00943974	0.184298	0.0861183
chr8	94846173	94846273	3800356	0	+	0.23	[0,0.28]	chr8	352383	33	INTRON	INTRON	INTS8	ENSG00000164941.14	ENST00000523731.6:ENST00000524333.5:ENST00000523321.5:ENST00000343161.8:ENST00000523206.5:ENST00000520526.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	34	2	4.20106	4.4912399999999995	4.78142	0.0695895	0.00943974	0.184298	0.0861183
chr9	5006986	5007086	4096040	0	+	0.25	[0,0.28]	chr9	373235	206	INTRON	INTRON	JAK2	ENSG00000096968.14	ENST00000636127.1:ENST00000476574.5:ENST00000381652.4	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.20106	4.4912399999999995	4.78142	0.0695895	0.00943974	0.184298	0.0861183
chr9	93475159	93475259	4158281	0	+	0.27	[0,0.28]	chr9	379133	34	INTRON	INTRON	FAM120A	ENSG00000048828.17	ENST00000277165.11:ENST00000375389.7:ENST00000446420.2	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.20106	4.4912399999999995	4.78142	0.0695895	0.00943974	0.184298	0.0861183
chrX	124027385	124027484	7717415	0	+	0.262626	[0,0.28]	chrX	789500	3	INTRON	INTRON	STAG2	ENSG00000101972.20	ENST00000394477.5:ENST00000218089.13:ENST00000455404.5:ENST00000483575.5:ENST00000687810.1:ENST00000687071.1:ENST00000469481.1:ENST00000371160.5:ENST00000435103.5:ENST00000687852.1:ENST00000371145.8:ENST00000692982.1:ENST00000371157.7:ENST00000691035.1:ENST00000686802.1:ENST00000691383.1:ENST00000686127.1:ENST00000371144.7:ENST00000458176.5:ENST00000466748.5:ENST00000471107.1:ENST00000428941.5:ENST00000435215.5:ENST00000394478.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	34	2	4.20106	4.4912399999999995	4.78142	0.0695895	0.00943974	0.184298	0.0861183
chr1	27436427	27436527	406227	0	-	0.38	(0.378,0.408]	chr1	48986	71	INTRON	INTRON	WASF2	ENSG00000158195.11	ENST00000618852.5:ENST00000536657.1	protein_coding	protein_coding	protein_coding	protein_coding	1	69	2	3.23708	4.49073	5.74438	0.00365053	5.15539e-5	0.0535094	0.00585477
chr2	20795594	20795694	1078854	0	-	0.25	[0,0.28]	chr2	115159	48	INTRON	INTRON	LDAH	ENSG00000118961.15	ENST00000619656.4:ENST00000541941.5:ENST00000440866.6:ENST00000435420.6:ENST00000403006.6:ENST00000237822.8:ENST00000381090.7:ENST00000626491.2:ENST00000432947.1:ENST00000412261.5:ENST00000402479.6:ENST00000419825.2	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.28915	4.49053	4.69191	0.0319595	0.0269474	0.14477	0.123442
chr7	156767785	156767885	3686753	0	-	0.25	[0,0.28]	chr7	342051	36	INTRON	INTRON	LMBR1	ENSG00000105983.23	ENST00000353442.10:ENST00000448926.5:ENST00000415428.5:ENST00000454132.5:ENST00000434503.5:ENST00000430278.5:ENST00000434278.5:ENST00000444719.5:ENST00000461469.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	34	2	4.28915	4.49053	4.69191	0.0319595	0.0269474	0.14477	0.123442
chr9	98110833	98110932	4300761	0	-	0.272727	[0,0.28]	chr9	395484	2	INTRON	INTRON	TRIM14	ENSG00000106785.15	ENST00000375098.7:ENST00000341469.7:ENST00000342043.3:ENST00000475147.1:ENST00000478401.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	34	2	4.28915	4.49053	4.69191	0.0319595	0.0269474	0.14477	0.123442
chr12	111872078	111872177	5229035	0	+	0.414141	(0.408,0.44]	chr12	495670	5	INTRON	INTRON	MAPKAPK5	ENSG00000089022.14	ENST00000550735.7:ENST00000553053.5:ENST00000551404.6:ENST00000549875.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	31	2	4.12187	4.490295	4.85872	0.0354689	0.00221911	0.137535	0.0435144
chr18	51034208	51034308	6901661	0	+	0.42	(0.408,0.44]	chr18	683840	32	INTRON	INTRON	SMAD4	ENSG00000141646.15	ENST00000588860.5:ENST00000398417.6:ENST00000589076.5:ENST00000342988.8:ENST00000590061.1:ENST00000592911.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	31	2	4.12187	4.490295	4.85872	0.0354689	0.00221911	0.137535	0.0435144
chr9	120846657	120846732	4190672	0	+	0.413333	(0.408,0.44]	chr9	382180	3	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	CUTALP	ENSG00000226752.10	ENST00000589026.5:ENST00000639576.1:ENST00000640391.2:ENST00000640296.2:ENST00000640066.1:ENST00000639139.1:ENST00000638905.1:ENST00000640327.1:ENST00000640907.1:ENST00000639267.1:ENST00000638935.1:ENST00000640808.1:ENST00000639075.1:ENST00000638362.1	transcribed_unitary_pseudogene	processed_transcript	transcribed_unitary_pseudogene	processed_transcript	0	31	2	4.12187	4.490295	4.85872	0.0354689	0.00221911	0.137535	0.0435144
chr2	55665499	55665598	1125471	0	-	0.292929	(0.28,0.32]	chr2	120771	31	INTRON	INTRON	PNPT1	ENSG00000138035.15	ENST00000447944.7:ENST00000415374.5:ENST00000260604.8:ENST00000415489.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	72	2	3.30893	4.49025	5.67157	0.00260504	9.48957e-4	0.0470772	0.0281755
chr14	55662027	55662112	5727873	0	+	0.423529	(0.408,0.44]	chr14	543705	3	SS5_PROX	SS5_PROX:INTRON	KTN1	ENSG00000126777.18	ENST00000395314.8:ENST00000438792.6:ENST00000459737.5:ENST00000395308.5:ENST00000395311.5:ENST00000413890.6:ENST00000395309.7:ENST00000554507.5:ENST00000554570.1:ENST00000553624.5:ENST00000555573.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	31	2	4.22447	4.489225	4.75398	0.0161655	0.00703931	0.109464	0.0718189
chr14	73277990	73278089	5917481	0	-	0.424242	(0.408,0.44]	chr14	562185	3	INTRON	INTRON	NUMB	ENSG00000133961.21	ENST00000554546.5:ENST00000535282.5:ENST00000359560.7:ENST00000355058.7:ENST00000544991.7:ENST00000555238.6:ENST00000557597.5:ENST00000356296.8:ENST00000556772.5:ENST00000555394.5:ENST00000559312.5:ENST00000560335.5:ENST00000555738.6:ENST00000554521.6:ENST00000554014.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	31	2	4.22447	4.489225	4.75398	0.0161655	0.00703931	0.109464	0.0718189
chr15	63060468	63060568	6040409	0	+	0.41	(0.408,0.44]	chr15	575151	2	SS3_PROX	SS3_PROX:INTRON	TPM1	ENSG00000140416.23	ENST00000288398.10:ENST00000651344.1:ENST00000560975.5:ENST00000358278.7:ENST00000357980.9:ENST00000403994.9:ENST00000558314.5:ENST00000558347.5:ENST00000267996.11:ENST00000559556.5:ENST00000559397.6:ENST00000561266.6:ENST00000560970.6:ENST00000644204.1:ENST00000559831.5:ENST00000651704.1:ENST00000334895.10:ENST00000404484.9:ENST00000558910.3:ENST00000317516.12:ENST00000651590.1:ENST00000558544.5:ENST00000558868.5:ENST00000560959.5:ENST00000559281.6:ENST00000560615.5:ENST00000651577.1:ENST00000558264.5:ENST00000561395.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	31	2	4.22447	4.489225	4.75398	0.0161655	0.00703931	0.109464	0.0718189
chr15	89196512	89196611	6095662	0	+	0.434343	(0.408,0.44]	chr15	580055	12	UTR3	UTR3:EXON_MRNA	ABHD2	ENSG00000140526.18	ENST00000352732.10	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.22447	4.489225	4.75398	0.0161655	0.00703931	0.109464	0.0718189
chr1	231529002	231529078	337604	0	+	0.368421	(0.35,0.378]	chr1	39308	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TSNAX	ENSG00000116918.15	ENST00000413309.3:ENST00000602825.5:ENST00000366639.9	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	31	2	4.39303	4.4892	4.58537	0.0237246	0.00703328	0.118716	0.0754576
chr12	14792840	14792938	5273118	0	-	0.377551	(0.35,0.378]	chr12	502625	12	INTRON	INTRON	WBP11	ENSG00000084463.8	ENST00000261167.7:ENST00000535638.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	31	2	4.39303	4.4892	4.58537	0.0237246	0.00703328	0.118716	0.0754576
chr13	27163990	27164090	5566488	0	-	0.37	(0.35,0.378]	chr13	532032	470	INTRON	INTRON	USP12	ENSG00000152484.14	ENST00000282344.11	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.39303	4.4892	4.58537	0.0237246	0.00703328	0.118716	0.0754576
chr15	63669237	63669337	6199209	0	-	0.37	(0.35,0.378]	chr15	591217	3	SS5_PROX	SS5_PROX:INTRON	HERC1	ENSG00000103657.14	ENST00000443617.7	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.39303	4.4892	4.58537	0.0237246	0.00703328	0.118716	0.0754576
chr20	56382153	56382236	7358780	0	-	0.373494	(0.35,0.378]	chr20	750352	2	INTRON	INTRON	AURKA	ENSG00000087586.18	ENST00000395914.5:ENST00000395913.7:ENST00000312783.10:ENST00000395911.5:ENST00000395915.8:ENST00000347343.6:ENST00000371356.6:ENST00000395907.5:ENST00000441357.5	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.39303	4.4892	4.58537	0.0237246	0.00703328	0.118716	0.0754576
chr3	172200888	172200988	1561166	0	+	0.36	(0.35,0.378]	chr3	161562	137	INTRON	INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000469491.5:ENST00000336824.8:ENST00000416957.5:ENST00000478016.1:ENST00000443501.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	31	2	4.39303	4.4892	4.58537	0.0237246	0.00703328	0.118716	0.0754576
chr5	31426923	31427021	2595922	0	-	0.357143	(0.35,0.378]	chr5	246550	21	INTRON	INTRON	DROSHA	ENSG00000113360.17	ENST00000344624.8:ENST00000511367.6:ENST00000513349.5:ENST00000504133.5:ENST00000510178.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	31	2	4.39303	4.4892	4.58537	0.0237246	0.00703328	0.118716	0.0754576
chr2	202269260	202269359	984945	0	+	0.444444	(0.44,0.476]	chr2	105703	29	INTRON	INTRON	NOP58	ENSG00000055044.11	ENST00000488403.5:ENST00000426814.5:ENST00000264279.10:ENST00000472050.5:ENST00000492740.5:ENST00000467734.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	34	2	3.8344	4.48909	5.14378	0.041276	0.00184943	0.161534	0.0388609
chr1	114478676	114478776	527574	0	-	0.37	(0.35,0.378]	chr1	62153	139	INTRON	INTRON	TRIM33	ENSG00000197323.12	ENST00000358465.7:ENST00000369543.6	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.48184	4.489050000000001	4.49626	0.0191702	0.00917582	0.108861	0.0855292
chr1	193179290	193179390	285194	0	+	0.37	(0.35,0.378]	chr1	32819	177	INTRON	INTRON	CDC73	ENSG00000134371.14	ENST00000649895.1:ENST00000643006.1:ENST00000367435.5:ENST00000650197.1:ENST00000648071.1:ENST00000635846.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	31	2	4.48184	4.489050000000001	4.49626	0.0191702	0.00917582	0.108861	0.0855292
chr1	212873915	212874014	309999	0	+	0.363636	(0.35,0.378]	chr1	35804	7	INTRON	INTRON	FLVCR1	ENSG00000162769.13	ENST00000366971.9:ENST00000419102.1:ENST00000474693.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	31	2	4.48184	4.489050000000001	4.49626	0.0191702	0.00917582	0.108861	0.0855292
chr10	87321339	87321436	4661177	0	-	0.360825	(0.35,0.378]	chr10	429468	2	INTRON	INTRON	NUTM2A-AS1	ENSG00000223482.9	ENST00000692417.1:ENST00000688214.1:ENST00000659257.1:ENST00000671543.1:ENST00000451940.6:ENST00000687947.1:ENST00000663644.1:ENST00000684884.1:ENST00000664664.1:ENST00000446751.6:ENST00000456104.5:ENST00000433530.7:ENST00000688257.1:ENST00000433920.5:ENST00000687925.1:ENST00000666515.2:ENST00000688926.1:ENST00000447424.6:ENST00000690598.1:ENST00000663113.1:ENST00000667520.2:ENST00000693252.1:ENST00000687827.1:ENST00000687141.1:ENST00000654503.2:ENST00000655272.2:ENST00000668676.1:ENST00000653080.1:ENST00000690287.1:ENST00000413722.6:ENST00000653238.1:ENST00000660454.1:ENST00000688790.1:ENST00000660726.2:ENST00000417860.7:ENST00000663683.1:ENST00000686862.1:ENST00000413961.5	lncRNA	lncRNA	lncRNA	lncRNA	0	31	2	4.48184	4.489050000000001	4.49626	0.0191702	0.00917582	0.108861	0.0855292
chr15	51955272	51955371	6176913	0	-	0.363636	(0.35,0.378]	chr15	588844	3	INTRON	INTRON	LEO1	ENSG00000166477.13	ENST00000299601.10:ENST00000315141.5	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.48184	4.489050000000001	4.49626	0.0191702	0.00917582	0.108861	0.0855292
chr4	177338789	177338888	2083531	0	+	0.373737	(0.35,0.378]	chr4	205919	21	INTRON	INTRON	NEIL3	ENSG00000109674.4	ENST00000264596.4:ENST00000513321.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	31	2	4.48184	4.489050000000001	4.49626	0.0191702	0.00917582	0.108861	0.0855292
chr5	131424510	131424608	2717019	0	-	0.357143	(0.35,0.378]	chr5	255424	7	UTR3	UTR3:EXON_MRNA	RAPGEF6	ENSG00000158987.22	ENST00000509018.6:ENST00000671916.1	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.48184	4.489050000000001	4.49626	0.0191702	0.00917582	0.108861	0.0855292
chr5	132362378	132362476	2722391	0	-	0.357143	(0.35,0.378]	chr5	255898	19	INTRON	INTRON	MIR3936HG	ENSG00000233006.8	ENST00000621103.4:ENST00000669845.1:ENST00000649993.1	lncRNA	lncRNA	lncRNA	lncRNA	0	31	2	4.48184	4.489050000000001	4.49626	0.0191702	0.00917582	0.108861	0.0855292
chr5	180243552	180243651	2782546	0	-	0.363636	(0.35,0.378]	chr5	262697	4	INTRON	INTRON	MAPK9	ENSG00000050748.18	ENST00000452135.7:ENST00000343111.10:ENST00000455781.5:ENST00000393360.7:ENST00000347470.8:ENST00000397072.7:ENST00000393362.8:ENST00000524170.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	31	2	4.48184	4.489050000000001	4.49626	0.0191702	0.00917582	0.108861	0.0855292
chr7	152215140	152215239	3679049	0	-	0.373737	(0.35,0.378]	chr7	341526	63	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000683200.1:ENST00000682283.1:ENST00000473186.5:ENST00000679882.1:ENST00000680969.1:ENST00000681033.1:ENST00000682176.1:ENST00000679645.1:ENST00000684550.1:ENST00000489110.2:ENST00000681838.1:ENST00000683490.1:ENST00000684623.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	31	2	4.48184	4.489050000000001	4.49626	0.0191702	0.00917582	0.108861	0.0855292
chrX	11122006	11122104	7621564	0	+	0.377551	(0.35,0.378]	chrX	780108	3	UTR3	UTR3:EXON_MRNA	HCCS	ENSG00000004961.15	ENST00000321143.8:ENST00000380762.5	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.48184	4.489050000000001	4.49626	0.0191702	0.00917582	0.108861	0.0855292
chr7	151361348	151361448	3449277	0	+	0.49	(0.476,0.515]	chr7	322372	2	INTRON	INTRON	NUB1	ENSG00000013374.17	ENST00000413040.7:ENST00000568733.6:ENST00000470229.6:ENST00000480907.5:ENST00000497987.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	63	2	3.66565	4.488115	5.31058	9.15544e-4	4.18031e-4	0.0278396	0.0182827
chr10	92690995	92691069	4491342	0	+	0.418919	(0.408,0.44]	chr10	413666	3	INTRON	INTRON	HHEX	ENSG00000152804.11	ENST00000282728.10:ENST00000551454.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	63	2	3.67886	4.48749	5.29612	0.00113523	3.86173e-4	0.0307488	0.017761
chr12	49995295	49995391	5322357	0	-	0.40625	(0.378,0.408]	chr12	507338	4	INTRON	INTRON	RACGAP1	ENSG00000161800.13	ENST00000312377.10:ENST00000427314.6:ENST00000454520.6:ENST00000551016.5:ENST00000547905.5:ENST00000549342.1	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	3.98867	4.4872700000000005	4.98587	0.0507	0.00152268	0.156383	0.0360297
chr21	29044197	29044295	7390170	0	+	0.459184	(0.44,0.476]	chr21	753021	2	INTRON	INTRON	USP16	ENSG00000156256.15	ENST00000399975.7:ENST00000334352.8:ENST00000474835.5:ENST00000399976.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	64	2	3.8307	4.48724	5.14378	0.00184943	1.81621e-4	0.0388609	0.0117212
chr6	37298543	37298643	2855725	0	+	0.52	(0.515,0.57]	chr6	269985	68	INTRON	INTRON	TBC1D22B	ENSG00000065491.8	ENST00000373491.3	protein_coding	protein_coding	protein_coding	protein_coding	2	119	2	4.43438	4.487045	4.53971	6.56174e-6	1.89301e-6	0.00193947	8.35956e-4
chr12	116127309	116127409	5424042	0	-	0.29	(0.28,0.32]	chr12	518263	154	INTRON	INTRON	MED13L	ENSG00000123066.9	ENST00000281928.9:ENST00000650226.1:ENST00000548743.2:ENST00000647567.1:ENST00000551197.2	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.14214	4.4868950000000005	4.83165	0.0579756	0.00527257	0.167723	0.0656295
chr16	74939460	74939559	6526828	0	-	0.292929	(0.28,0.32]	chr16	632110	8	INTRON	INTRON	WDR59	ENSG00000103091.15	ENST00000262144.11:ENST00000616369.4:ENST00000536050.5:ENST00000568462.5:ENST00000568323.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	33	2	4.14214	4.4868950000000005	4.83165	0.0579756	0.00527257	0.167723	0.0656295
chr9	91292023	91292123	4280521	0	-	0.31	(0.28,0.32]	chr9	393785	707	INTRON	INTRON	AUH	ENSG00000148090.12	ENST00000303617.5:ENST00000375731.9	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.14214	4.4868950000000005	4.83165	0.0579756	0.00527257	0.167723	0.0656295
chr9	113228758	113228857	4189156	0	+	0.292929	(0.28,0.32]	chr9	381956	12	INTRON	INTRON	SLC31A1	ENSG00000136868.11	ENST00000374212.5	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.14214	4.4868950000000005	4.83165	0.0579756	0.00527257	0.167723	0.0656295
chr16	67901336	67901436	6368919	0	+	0.55	(0.515,0.57]	chr16	612023	76	INTRON	INTRON	PSKH1	ENSG00000159792.10	ENST00000291041.6:ENST00000570631.5:ENST00000575198.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	29	2	4.20381	4.486825	4.76984	0.0189208	0.00198034	0.108861	0.0411469
chr17	82646985	82647083	6853679	0	-	0.520408	(0.515,0.57]	chr17	679390	26	INTRON	INTRON	WDR45B	ENSG00000141580.16	ENST00000392325.9:ENST00000572583.5:ENST00000573616.5:ENST00000571817.5:ENST00000574828.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	29	2	4.20381	4.486825	4.76984	0.0189208	0.00198034	0.108861	0.0411469
chrX	18982755	18982855	7772015	0	-	0.53	(0.515,0.57]	chrX	794402	280	INTRON	INTRON	PHKA2	ENSG00000044446.12	ENST00000379942.5	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	4.20381	4.486825	4.76984	0.0189208	0.00198034	0.108861	0.0411469
chr13	113190077	113190175	5651864	0	-	0.306122	(0.28,0.32]	chr13	538588	16	INTRON	INTRON	PCID2	ENSG00000126226.22	ENST00000337344.9:ENST00000622406.4:ENST00000375479.6:ENST00000375477.5:ENST00000246505.9:ENST00000375459.5:ENST00000375457.2:ENST00000475433.5:ENST00000480971.5:ENST00000484641.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	72	2	3.581	4.486675	5.39235	0.0024844	8.63544e-4	0.0446195	0.0266494
chr17	49758313	49758413	6794098	0	-	0.57	(0.515,0.57]	chr17	670428	112	INTRON	INTRON	FAM117A	ENSG00000121104.8	ENST00000240364.7:ENST00000513602.5:ENST00000503855.5:ENST00000514018.5:ENST00000505159.5:ENST00000506156.1:ENST00000509347.5:ENST00000503720.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	91	2	2.98563	4.486585	5.98754	1.77567e-4	1.57707e-5	0.0116289	0.00318411
chr9	123258744	123258844	4340383	0	-	0.48	(0.476,0.515]	chr9	398963	214	INTRON	INTRON	STRBP	ENSG00000165209.19	ENST00000348403.10:ENST00000360998.3:ENST00000407982.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	102	2	2.55884	4.4864999999999995	6.41416	0.00186081	4.70143e-6	0.039946	0.00158989
chr17	62009756	62009854	6810315	0	-	0.285714	(0.28,0.32]	chr17	672913	24	INTRON	INTRON	MED13	ENSG00000108510.10	ENST00000397786.7	protein_coding	protein_coding	protein_coding	protein_coding	5	149	2	2.6203	4.486465	6.3526300000000004	4.02303e-4	5.94762e-5	0.0180218	0.00676405
chr2	8986196	8986296	1063394	0	-	0.35	(0.32,0.35]	chr2	113387	114	INTRON	INTRON	MBOAT2	ENSG00000143797.12	ENST00000305997.8:ENST00000486484.5:ENST00000477073.5:ENST00000462696.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	140	2	2.12641	4.4864049999999995	6.8464	0.00815266	1.85864e-7	0.0766625	2.00929e-4
chr16	28553880	28553967	6468996	0	-	0.551724	(0.515,0.57]	chr16	624792	3	EXON_LNCRNA	EXON_LNCRNA	ENSG00000275441	ENSG00000275441.1	ENST00000613454.1	lncRNA	lncRNA	lncRNA	lncRNA	0	29	2	4.28921	4.486155	4.6831	0.00990051	0.00471288	0.0877296	0.0600108
chr16	67960782	67960879	6506208	0	-	0.546392	(0.515,0.57]	chr16	629863	24	INTRON	INTRON	SLC12A4	ENSG00000124067.17	ENST00000422611.6:ENST00000316341.8:ENST00000572037.5:ENST00000541864.6:ENST00000570802.5:ENST00000576616.5:ENST00000537830.6:ENST00000573023.6:ENST00000576377.1:ENST00000571299.5:ENST00000572010.5:ENST00000576462.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	29	2	4.28921	4.486155	4.6831	0.00990051	0.00471288	0.0877296	0.0600108
chr2	99355046	99355146	834988	0	+	0.54	(0.515,0.57]	chr2	93660	171	INTRON	INTRON	EIF5B	ENSG00000158417.11	ENST00000617677.1:ENST00000289371.11	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	4.28921	4.486155	4.6831	0.00990051	0.00471288	0.0877296	0.0600108
chr3	52482013	52482113	1428540	0	+	0.56	(0.515,0.57]	chr3	150891	2	INTRON	INTRON	NISCH	ENSG00000010322.16	ENST00000479054.5:ENST00000345716.9:ENST00000489895.5:ENST00000485765.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	29	2	4.28921	4.486155	4.6831	0.00990051	0.00471288	0.0877296	0.0600108
chr12	51010494	51010594	5324634	0	-	0.35	(0.32,0.35]	chr12	507732	4	SS5_PROX	SS5_PROX:INTRON	SLC11A2	ENSG00000110911.17	ENST00000547688.7:ENST00000644495.1:ENST00000643884.1:ENST00000546636.5:ENST00000547198.5:ENST00000394904.9:ENST00000262052.9:ENST00000643123.1:ENST00000646740.1:ENST00000642227.1:ENST00000541174.6:ENST00000546743.5:ENST00000547510.5:ENST00000546488.5:ENST00000547579.5:ENST00000550714.5:ENST00000547732.5:ENST00000548193.5:ENST00000646988.1:ENST00000549625.1:ENST00000681324.1:ENST00000550995.5:ENST00000550329.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	116	2	3.2697	4.48605	5.7024	5.25722e-4	5.58713e-5	0.0210958	0.00612005
chr5	87375216	87375316	2411883	0	+	0.43	(0.408,0.44]	chr5	232472	3	SS5_PROX	SS5_PROX:INTRON	RASA1	ENSG00000145715.15	ENST00000274376.11:ENST00000515800.6:ENST00000456692.6:ENST00000506290.1:ENST00000512763.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	34	2	3.83494	4.48598	5.13702	0.0411442	0.00202889	0.161534	0.04086
chr8	99314537	99314637	3814297	0	+	0.42	(0.408,0.44]	chr8	353192	389	INTRON	INTRON	VPS13B	ENSG00000132549.20	ENST00000496144.5:ENST00000683334.1:ENST00000357162.7:ENST00000358544.7:ENST00000683619.1:ENST00000683869.1:ENST00000682153.1:ENST00000682358.1:ENST00000682145.1:ENST00000355155.6:ENST00000682234.1:ENST00000683486.1:ENST00000522802.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	34	2	3.83494	4.48598	5.13702	0.0411442	0.00202889	0.161534	0.04086
chr5	115836930	115837028	2707884	0	-	0.295918	(0.28,0.32]	chr5	254816	19	INTRON	INTRON	ATG12	ENSG00000145782.13	ENST00000509910.2:ENST00000500945.2:ENST00000508464.5:ENST00000513322.5:ENST00000511984.5:ENST00000379594.7:ENST00000509598.5:ENST00000505993.5:ENST00000513167.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	33	2	4.23719	4.485965	4.73474	0.0264147	0.0162835	0.133676	0.101453
chr2	47818220	47818313	1115221	0	-	0.376344	(0.35,0.378]	chr2	119619	7	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	FBXO11	ENSG00000138081.22	ENST00000684712.1:ENST00000682451.1:ENST00000403359.8:ENST00000402508.5:ENST00000683894.1:ENST00000681999.1:ENST00000682975.1:ENST00000684085.1:ENST00000493962.6:ENST00000682484.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	66	2	3.31736	4.485765	5.65417	0.00211072	4.33402e-4	0.0425419	0.0190829
chr11	47836386	47836486	4952046	0	-	0.38	(0.378,0.408]	chr11	464624	1	SS5_PROX	SS5_PROX:INTRON	NUP160	ENSG00000030066.14	ENST00000694866.1:ENST00000378460.7:ENST00000530326.5:ENST00000528071.5:ENST00000528501.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	32	2	4.09379	4.485705	4.87762	0.023912	0.00553849	0.129075	0.0648867
chr17	6913982	6914082	6717343	0	-	0.58	(0.57,1]	chr17	658643	323	INTRON	INTRON	ALOX12-AS1	ENSG00000215067.11	ENST00000653385.1:ENST00000659418.1:ENST00000572385.5:ENST00000570562.5:ENST00000575889.5	lncRNA	lncRNA	lncRNA	lncRNA	3	100	2	4.09372	4.485135	4.87655	3.50951e-7	5.14299e-8	3.00241e-4	9.0631e-5
chr3	180958720	180958818	1569080	0	+	0.244898	[0,0.28]	chr3	162419	4	INTRON	INTRON	FXR1	ENSG00000114416.18	ENST00000305586.11:ENST00000475315.5:ENST00000357559.9:ENST00000468861.5:ENST00000491062.5:ENST00000445140.6:ENST00000472339.5:ENST00000480918.5:ENST00000461044.5:ENST00000498658.5:ENST00000476672.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	111	2	3.4551	4.48499	5.51488	0.00314116	1.71783e-4	0.0500389	0.0113605
chr4	2954145	2954234	2100131	0	-	0.404494	(0.378,0.408]	chr4	207893	1	SS5_PROX	SS5_PROX:INTRON	NOP14	ENSG00000087269.16	ENST00000416614.7:ENST00000314262.10:ENST00000502735.5:ENST00000398071.4	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	3.96471	4.48465	5.00459	0.032421	0.00371142	0.145026	0.0535094
chr12	50474567	50474667	5137093	0	+	0.58	(0.57,1]	chr12	484457	4	SS5_PROX	SS5_PROX:INTRON	LARP4	ENSG00000161813.23	ENST00000293618.12:ENST00000429001.7:ENST00000398473.7:ENST00000518444.5:ENST00000347328.9:ENST00000520064.2	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	4.16881	4.48446	4.80011	0.00574776	6.07135e-4	0.0681402	0.0226059
chr19	11128285	11128385	7017229	0	+	0.62	(0.57,1]	chr19	697510	2	SS5_PROX	SS5_PROX:INTRON	LDLR	ENSG00000130164.14	ENST00000557933.5:ENST00000558518.6:ENST00000545707.5:ENST00000535915.5:ENST00000455727.6:ENST00000558013.5:ENST00000252444.9:ENST00000560628.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	24	2	4.16881	4.48446	4.80011	0.00574776	6.07135e-4	0.0681402	0.0226059
chr1	246463755	246463855	680287	0	-	0.51	(0.476,0.515]	chr1	79777	465	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000490107.6:ENST00000462422.5:ENST00000403792.7:ENST00000470863.1:ENST00000455277.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	160	2	2.15187	4.483875	6.81588	0.00172536	6.0888e-8	0.0374701	1.07836e-4
chr1	21093695	21093795	392796	0	-	0.36	(0.35,0.378]	chr1	46832	41	INTRON	INTRON	EIF4G3	ENSG00000075151.24	ENST00000374935.7:ENST00000602326.6:ENST00000685872.1:ENST00000686579.1:ENST00000688741.1:ENST00000684485.1:ENST00000400422.6:ENST00000634879.2:ENST00000693470.1:ENST00000685814.1:ENST00000356916.7:ENST00000682284.1:ENST00000438975.5:ENST00000411888.5:ENST00000463775.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	31	2	4.29839	4.483840000000001	4.66929	0.0294717	0.00541617	0.128055	0.066545000000000007
chr1	227261600	227261699	651151	0	-	0.373737	(0.35,0.378]	chr1	77108	71	INTRON	INTRON	CDC42BPA	ENSG00000143776.20	ENST00000366766.8:ENST00000366769.7:ENST00000334218.9:ENST00000366767.7:ENST00000366764.8:ENST00000478573.6:ENST00000682551.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	31	2	4.29839	4.483840000000001	4.66929	0.0294717	0.00541617	0.128055	0.066545000000000007
chr19	11829004	11829100	7019050	0	+	0.354167	(0.35,0.378]	chr19	697805	10	INTRON	INTRON	ZNF440	ENSG00000171295.13	ENST00000304060.10:ENST00000457526.1:ENST00000427505.5:ENST00000588954.5	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.29839	4.483840000000001	4.66929	0.0294717	0.00541617	0.128055	0.066545000000000007
chr13	33846879	33846978	5467646	0	+	0.484848	(0.476,0.515]	chr13	523971	8	EXON_LNCRNA	EXON_LNCRNA:INTRON	RFC3:ENSG00000276672	ENSG00000133119.13:ENSG00000276672.1	ENST00000434425.5:ENST00000616236.1:ENST00000621575.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	1	67	2	3.5704	4.483745	5.39709	8.75056e-4	2.55871e-4	0.0270926	0.0142249
chr11	78416845	78416945	5000378	0	-	0.59	(0.57,1]	chr11	472472	524	INTRON	INTRON	GAB2	ENSG00000033327.13	ENST00000361507.5:ENST00000526030.1:ENST00000528886.5:ENST00000530915.1:ENST00000534823.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	42	2	3.63124	4.48366	5.33608	2.87208e-4	3.92497e-5	0.0150568	0.00533644
chr15	75883524	75883624	6065470	0	+	0.51	(0.476,0.515]	chr15	577587	1	SS5_PROX	SS5_PROX:INTRON	UBE2Q2	ENSG00000140367.12	ENST00000569423.5:ENST00000267938.9:ENST00000561723.5:ENST00000561851.5:ENST00000426727.6:ENST00000567921.1:ENST00000563966.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	30	2	4.44128	4.483639999999999	4.526	0.0151924	0.00699701	0.0994339	0.0754576
chr3	185719630	185719730	1885294	0	-	0.5	(0.476,0.515]	chr3	188573	209	INTRON	INTRON	IGF2BP2	ENSG00000073792.16	ENST00000382199.7:ENST00000346192.7:ENST00000457616.6:ENST00000421047.3:ENST00000461957.5:ENST00000493302.5:ENST00000466476.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	30	2	4.44128	4.483639999999999	4.526	0.0151924	0.00699701	0.0994339	0.0754576
chr9	38049529	38049629	4254139	0	-	0.49	(0.476,0.515]	chr9	391691	330	INTRON	INTRON	SHB	ENSG00000107338.10	ENST00000377707.4	protein_coding	protein_coding	protein_coding	protein_coding	0	30	2	4.44128	4.483639999999999	4.526	0.0151924	0.00699701	0.0994339	0.0754576
chr1	110255	110354	352479	0	-	0.373737	(0.35,0.378]	chr1	40774	177	INTRON	INTRON	ENSG00000238009	ENSG00000238009.6	ENST00000466430.5:ENST00000477740.5	lncRNA	lncRNA	lncRNA	lncRNA	0	31	2	4.40128	4.48339	4.5655	0.0155464	0.0120289	0.100909	0.0962115
chr1	11216634	11216734	378057	0	-	0.36	(0.35,0.378]	chr1	44282	4	SS3_PROX	SS3_PROX:INTRON	MTOR	ENSG00000198793.13	ENST00000361445.9	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.40128	4.48339	4.5655	0.0155464	0.0120289	0.100909	0.0962115
chr10	110066517	110066617	4518979	0	+	0.36	(0.35,0.378]	chr10	416765	495	INTRON	INTRON	ADD3	ENSG00000148700.15	ENST00000468251.5:ENST00000360162.7:ENST00000277900.12:ENST00000356080.9:ENST00000484622.5:ENST00000487085.5:ENST00000459738.5:ENST00000497125.5:ENST00000495661.5:ENST00000475954.5:ENST00000496517.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	31	2	4.40128	4.48339	4.5655	0.0155464	0.0120289	0.100909	0.0962115
chr12	19152142	19152242	5088495	0	+	0.36	(0.35,0.378]	chr12	480740	193	INTRON	INTRON	PLEKHA5	ENSG00000052126.15	ENST00000429027.7:ENST00000540972.5:ENST00000299275.10:ENST00000539256.5:ENST00000538714.5:ENST00000535357.5:ENST00000538034.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	31	2	4.40128	4.48339	4.5655	0.0155464	0.0120289	0.100909	0.0962115
chr15	64348776	64348875	6204758	0	-	0.353535	(0.35,0.378]	chr15	591778	5	INTRON	INTRON	CSNK1G1:ENSG00000259316	ENSG00000169118.18:ENSG00000259316.12	ENST00000303052.13:ENST00000607537.6:ENST00000634654.1:ENST00000634811.1:ENST00000634251.1:ENST00000634847.3:ENST00000635529.1:ENST00000634318.1:ENST00000635160.1:ENST00000635704.1:ENST00000634529.1:ENST00000635511.1:ENST00000635605.1:ENST00000635593.1:ENST00000634259.2:ENST00000560278.2:ENST00000635413.1:ENST00000634538.1:ENST00000635320.1:ENST00000558783.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	31	2	4.40128	4.48339	4.5655	0.0155464	0.0120289	0.100909	0.0962115
chr16	3836024	3836124	6435639	0	-	0.37	(0.35,0.378]	chr16	619576	226	INTRON	INTRON	CREBBP	ENSG00000005339.15	ENST00000262367.10:ENST00000382070.7:ENST00000636895.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	31	2	4.40128	4.48339	4.5655	0.0155464	0.0120289	0.100909	0.0962115
chr16	10450831	10450930	6286933	0	+	0.373737	(0.35,0.378]	chr16	602005	100	INTRON	INTRON	ATF7IP2	ENSG00000166669.14	ENST00000396559.5:ENST00000396560.6:ENST00000543967.5:ENST00000562102.6:ENST00000535850.5:ENST00000568027.5:ENST00000324570.9:ENST00000356427.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	31	2	4.40128	4.48339	4.5655	0.0155464	0.0120289	0.100909	0.0962115
chr5	177266782	177266879	2555049	0	+	0.371134	(0.35,0.378]	chr5	244024	11	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	NSD1	ENSG00000165671.22	ENST00000689549.1:ENST00000354179.9:ENST00000686993.1:ENST00000439151.7:ENST00000689345.1:ENST00000347982.9:ENST00000687453.1:ENST00000685206.1:ENST00000688613.1:ENST00000508029.6:ENST00000692024.1:ENST00000503056.6:ENST00000504457.5:ENST00000505395.5:ENST00000687095.1:ENST00000515735.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	31	2	4.40128	4.48339	4.5655	0.0155464	0.0120289	0.100909	0.0962115
chr7	10624949	10625049	3483029	0	-	0.36	(0.35,0.378]	chr7	325772	630	INTRON	INTRON	MGC4859	ENSG00000283117.1	ENST00000634803.1	lncRNA	lncRNA	lncRNA	lncRNA	0	31	2	4.40128	4.48339	4.5655	0.0155464	0.0120289	0.100909	0.0962115
chr1	16254231	16254328	381630	0	-	0.329897	(0.32,0.35]	chr1	44857	1	INTRON	INTRON	FBXO42	ENSG00000037637.11	ENST00000375592.8	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.17181	4.483314999999999	4.79482	0.04531	0.00447781	0.149888	0.0610799
chr1	246603285	246603384	350353	0	+	0.323232	(0.32,0.35]	chr1	40496	110	INTRON	INTRON	CNST	ENSG00000162852.14	ENST00000483271.1:ENST00000366513.9:ENST00000366512.7:ENST00000366511.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	32	2	4.17181	4.483314999999999	4.79482	0.04531	0.00447781	0.149888	0.0610799
chr20	35409760	35409857	7335188	0	-	0.340206	(0.32,0.35]	chr20	747203	3	SS3_PROX	SS3_PROX:SS5_PROX:INTRON	UQCC1	ENSG00000101019.22	ENST00000374380.6:ENST00000374394.7:ENST00000374384.6:ENST00000359226.6:ENST00000349714.9:ENST00000457259.5:ENST00000374385.10:ENST00000453855.5:ENST00000424405.5:ENST00000443429.5:ENST00000438533.5:ENST00000397554.5:ENST00000491125.5:ENST00000491040.5:ENST00000397553.6:ENST00000495752.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	32	2	4.17181	4.483314999999999	4.79482	0.04531	0.00447781	0.149888	0.0610799
chr7	24960587	24960687	3505631	0	-	0.35	(0.32,0.35]	chr7	327114	426	INTRON	INTRON	OSBPL3	ENSG00000070882.13	ENST00000313367.7:ENST00000415952.1	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.17181	4.483314999999999	4.79482	0.04531	0.00447781	0.149888	0.0610799
chr7	139082303	139082401	3656144	0	-	0.336735	(0.32,0.35]	chr7	339437	17	INTRON	INTRON	ZC3HAV1	ENSG00000105939.14	ENST00000242351.10:ENST00000464606.5:ENST00000680309.1:ENST00000471652.1	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.17181	4.483314999999999	4.79482	0.04531	0.00447781	0.149888	0.0610799
chr9	78026914	78027014	4271899	0	-	0.38	(0.378,0.408]	chr9	392880	1042	INTRON	INTRON	GNAQ	ENSG00000156052.11	ENST00000286548.9:ENST00000411677.1	protein_coding	protein_coding	protein_coding	protein_coding	1	66	2	3.1136	4.4832350000000005	5.85287	0.00443339	1.39037e-4	0.061054	0.0107072
chr2	202266386	202266486	984916	0	+	0.56	(0.515,0.57]	chr2	105702	4	SS5_PROX	SS5_PROX:INTRON	NOP58	ENSG00000055044.11	ENST00000488403.5:ENST00000426814.5:ENST00000264279.10:ENST00000472050.5:ENST00000492740.5:ENST00000467734.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	59	2	3.19178	4.483095	5.77441	0.00289534	4.92858e-5	0.0494641	0.00608708
chr18	9939354	9939454	6873603	0	+	0.58	(0.57,1]	chr18	680892	19	INTRON	INTRON	VAPA	ENSG00000101558.14	ENST00000400000.7:ENST00000340541.4:ENST00000584796.5:ENST00000583879.5:ENST00000583475.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	65	2	3.05625	4.48267	5.90909	8.84921e-5	9.66825e-7	0.00791674	6.0856e-4
chr1	3898973	3899073	364644	0	-	0.28	[0,0.28]	chr1	42815	24	INTRON	INTRON	C1orf174	ENSG00000198912.12	ENST00000474140.1:ENST00000486765.5:ENST00000361605.4:ENST00000679703.1:ENST00000680054.1:ENST00000680279.1:ENST00000681823.1:ENST00000679946.1:ENST00000680169.1:ENST00000680535.1:ENST00000679929.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	35	2	4.07901	4.48263	4.88625	0.0494049	0.0173315	0.174117	0.104099
chr1	36229554	36229653	72982	0	+	0.262626	[0,0.28]	chr1	9371	37	INTRON	INTRON	THRAP3	ENSG00000054118.15	ENST00000469141.6:ENST00000648638.1:ENST00000354618.10	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.07901	4.48263	4.88625	0.0494049	0.0173315	0.174117	0.104099
chr11	20404170	20404268	4751089	0	+	0.22449	[0,0.28]	chr11	440010	8	INTRON	INTRON	PRMT3	ENSG00000185238.13	ENST00000330796.9:ENST00000331079.11:ENST00000437750.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	35	2	4.07901	4.48263	4.88625	0.0494049	0.0173315	0.174117	0.104099
chr15	87428497	87428597	6253832	0	-	0.22	[0,0.28]	chr15	596790	1013	INTRON	INTRON	ENSG00000259560	ENSG00000259560.2	ENST00000665121.1:ENST00000656130.1	lncRNA	lncRNA	lncRNA	lncRNA	0	35	2	4.07901	4.48263	4.88625	0.0494049	0.0173315	0.174117	0.104099
chrX	71384374	71384444	7678401	0	+	0.271429	[0,0.28]	chrX	786187	3	SS5_PROX	SS5_PROX:INTRON	TAF1	ENSG00000147133.17	ENST00000683202.1:ENST00000373790.9:ENST00000423759.6:ENST00000683782.1:ENST00000683715.1:ENST00000683668.1:ENST00000276072.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	35	2	4.07901	4.48263	4.88625	0.0494049	0.0173315	0.174117	0.104099
chrX	107130310	107130409	7859722	0	-	0.333333	(0.32,0.35]	chrX	801266	56	INTRON	INTRON	NUP62CL	ENSG00000198088.10	ENST00000372466.8:ENST00000484614.5:ENST00000432145.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	68	2	3.49869	4.482555	5.46642	0.00127669	0.00108004	0.0326395	0.0300133
chr1	146941817	146941914	211607	0	+	0.329897	(0.32,0.35]	chr1	23266	25	INTRON	INTRON	NBPF12	ENSG00000268043.8	ENST00000617931.4	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.27113	4.482465	4.6938	0.0199982	0.0137794	0.120668	0.0949306
chr15	81839858	81839958	6243702	0	-	0.33	(0.32,0.35]	chr15	595867	211	INTRON	INTRON	ENSG00000259692	ENSG00000259692.6	ENST00000559428.2:ENST00000560054.6:ENST00000560097.1:ENST00000559299.2	lncRNA	lncRNA	lncRNA	lncRNA	0	32	2	4.27113	4.482465	4.6938	0.0199982	0.0137794	0.120668	0.0949306
chr16	89217164	89217262	6541320	0	-	0.336735	(0.32,0.35]	chr16	634114	21	EXON_LNCRNA	EXON_LNCRNA	ENSG00000259877	ENSG00000259877.2	ENST00000570267.2	lncRNA	lncRNA	lncRNA	lncRNA	0	32	2	4.27113	4.482465	4.6938	0.0199982	0.0137794	0.120668	0.0949306
chrX	115121626	115121726	7868746	0	-	0.35	(0.32,0.35]	chrX	801566	79	INTRON	INTRON	LRCH2	ENSG00000130224.15	ENST00000317135.13:ENST00000538422.2	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.27113	4.482465	4.6938	0.0199982	0.0137794	0.120668	0.0949306
chr10	908706	908806	4542357	0	-	0.39	(0.378,0.408]	chr10	419304	53	INTRON	INTRON	LARP4B	ENSG00000107929.16	ENST00000316157.8:ENST00000690516.1:ENST00000476529.5:ENST00000406525.6:ENST00000481118.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	193	2	4.16029	4.482295	4.8043	2.66667e-6	5.39334e-7	0.00115411	3.95293e-4
chr3	107536286	107536386	1469880	0	+	0.26	[0,0.28]	chr3	154137	95	INTRON	INTRON	BBX	ENSG00000114439.19	ENST00000415149.6:ENST00000402543.5:ENST00000325805.13:ENST00000485939.5:ENST00000427402.5:ENST00000416476.6:ENST00000454540.5:ENST00000449335.5:ENST00000431630.5:ENST00000458458.5:ENST00000456817.5:ENST00000456419.5:ENST00000402163.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	77	2	3.30083	4.48228	5.66373	0.00319246	0.00196371	0.0520345	0.0401678
chr15	44305138	44305238	6013229	0	+	0.45	(0.44,0.476]	chr15	572826	154	INTRON	INTRON	GOLM2	ENSG00000166734.20	ENST00000299957.11:ENST00000559222.5:ENST00000557945.5:ENST00000650436.1:ENST00000429162.2:ENST00000345795.6:ENST00000558735.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	30	2	4.43377	4.482055	4.53034	0.0162803	0.00672609	0.101453	0.0738715
chr16	30114998	30115094	6472143	0	-	0.458333	(0.44,0.476]	chr16	625430	3	SS3_PROX	SS3_PROX:INTRON	MAPK3	ENSG00000102882.12	ENST00000466521.5:ENST00000263025.9:ENST00000322266.9:ENST00000484663.5:ENST00000490298.5:ENST00000485579.1:ENST00000461737.5:ENST00000494643.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	30	2	4.43377	4.482055	4.53034	0.0162803	0.00672609	0.101453	0.0738715
chr17	8226892	8226991	6720107	0	-	0.444444	(0.44,0.476]	chr17	659338	22	UTR3	UTR3:EXON_MRNA	CTC1	ENSG00000178971.16	ENST00000651323.1:ENST00000449476.7:ENST00000643543.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	30	2	4.43377	4.482055	4.53034	0.0162803	0.00672609	0.101453	0.0738715
chr20	39023489	39023589	7273333	0	+	0.47	(0.44,0.476]	chr20	739173	4	SS3_PROX	SS3_PROX:INTRON	DHX35	ENSG00000101452.15	ENST00000373325.6:ENST00000252011.8:ENST00000373323.8:ENST00000652169.1:ENST00000484417.5:ENST00000449559.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	30	2	4.43377	4.482055	4.53034	0.0162803	0.00672609	0.101453	0.0738715
chr7	66746290	66746390	3325531	0	+	0.45	(0.44,0.476]	chr7	309233	51	INTRON	INTRON	RABGEF1	ENSG00000154710.18	ENST00000607882.5:ENST00000284957.9:ENST00000450873.6:ENST00000442563.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	30	2	4.43377	4.482055	4.53034	0.0162803	0.00672609	0.101453	0.0738715
chr6	3072441	3072540	2788149	0	+	0.232323	[0,0.28]	chr6	263292	32	INTRON	INTRON	RIPK1	ENSG00000137275.16	ENST00000678809.1:ENST00000678874.1:ENST00000380409.3:ENST00000677799.1:ENST00000677261.1:ENST00000676758.1:ENST00000676995.1:ENST00000679118.1:ENST00000479389.1:ENST00000676591.1:ENST00000259808.9:ENST00000676618.1:ENST00000678084.1:ENST00000677361.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	36	2	3.96122	4.481925	5.00263	0.0617993	0.013055	0.193423	0.093385
chr9	37151242	37151342	4117966	0	+	0.42	(0.408,0.44]	chr9	375382	34	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000322831.6:ENST00000461038.5:ENST00000488607.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	63	2	3.71874	4.481875	5.24501	0.00137378	3.17998e-4	0.0336718	0.0159645
chr19	5668384	5668478	7005775	0	+	0.308511	(0.28,0.32]	chr19	695043	2	UTR3	UTR3:EXON_MRNA	SAFB	ENSG00000160633.13	ENST00000588852.2:ENST00000292123.9:ENST00000592224.5:ENST00000591991.1:ENST00000592555.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	132	2	2.50162	4.481565	6.46151	0.0013622	3.61671e-5	0.0339121	0.00508987
chr5	656727	656827	2313834	0	+	0.36	(0.35,0.378]	chr5	223908	4	SS3_PROX	SS3_PROX:INTRON	CEP72	ENSG00000112877.8	ENST00000499639.2:ENST00000514507.1	protein_coding	processed_transcript	protein_coding	processed_transcript	1	72	2	3.54684	4.481495	5.41615	0.00119142	3.21724e-4	0.0315806	0.0159645
chr11	102354131	102354230	4855228	0	+	0.323232	(0.32,0.35]	chr11	452789	28	INTRON	INTRON	BIRC2	ENSG00000110330.10	ENST00000227758.7:ENST00000530675.5:ENST00000533742.5:ENST00000532672.5:ENST00000531259.5:ENST00000527910.5:ENST00000613397.4:ENST00000528344.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	74	2	3.12146	4.481365	5.84127	0.00630799	6.29724e-5	0.0687526	0.00658818
chr5	54409021	54409121	2354718	0	+	0.35	(0.32,0.35]	chr5	227095	1	INTRON	INTRON	LINC01033	ENSG00000249069.8	ENST00000653566.1:ENST00000655801.1:ENST00000654906.1:ENST00000659703.1:ENST00000662351.1:ENST00000523194.7:ENST00000665795.1:ENST00000667992.1:ENST00000657771.1:ENST00000658828.1:ENST00000670528.1:ENST00000657274.1:ENST00000504609.3	lncRNA	lncRNA	lncRNA	lncRNA	2	91	2	3.08864	4.48096	5.87328	6.64579e-4	2.6344e-4	0.0233423	0.0149561
chr1	12315807	12315905	29116	0	+	0.5	(0.476,0.515]	chr1	3540	11	INTRON	INTRON	VPS13D	ENSG00000048707.15	ENST00000620676.6:ENST00000613099.4:ENST00000011700.10:ENST00000646917.1:ENST00000460333.5:ENST00000487188.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	30	2	4.34648	4.480835	4.61519	0.0193566	0.00528365	0.108861	0.0656295
chr1	15857217	15857316	34754	0	+	0.494949	(0.476,0.515]	chr1	4246	87	INTRON	INTRON	SPEN	ENSG00000065526.12	ENST00000673875.1:ENST00000375759.8	protein_coding	protein_coding	protein_coding	protein_coding	0	30	2	4.34648	4.480835	4.61519	0.0193566	0.00528365	0.108861	0.0656295
chr3	20079131	20079231	1376815	0	+	0.5	(0.476,0.515]	chr3	145093	63	INTRON	INTRON	KAT2B	ENSG00000114166.8	ENST00000263754.5:ENST00000426228.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	30	2	4.34648	4.480835	4.61519	0.0193566	0.00528365	0.108861	0.0656295
chr3	47770421	47770521	1684962	0	-	0.5	(0.476,0.515]	chr3	172116	241	INTRON	INTRON	SMARCC1	ENSG00000173473.11	ENST00000254480.10:ENST00000425518.5:ENST00000454240.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	30	2	4.34648	4.480835	4.61519	0.0193566	0.00528365	0.108861	0.0656295
chr3	138796867	138796967	1831121	0	-	0.51	(0.476,0.515]	chr3	184061	3	SS3_PROX	SS3_PROX:INTRON	PIK3CB	ENSG00000051382.9	ENST00000674063.1:ENST00000477593.5:ENST00000462898.5:ENST00000483968.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	30	2	4.34648	4.480835	4.61519	0.0193566	0.00528365	0.108861	0.0656295
chr5	39375818	39375896	2607424	0	-	0.487179	(0.476,0.515]	chr5	248059	4	SS5_PROX	SS5_PROX:INTRON	DAB2	ENSG00000153071.15	ENST00000545653.5:ENST00000320816.11:ENST00000339788.10:ENST00000509337.5:ENST00000502879.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	30	2	4.34648	4.480835	4.61519	0.0193566	0.00528365	0.108861	0.0656295
chrX	13723010	13723109	7764189	0	-	0.515152	(0.476,0.515]	chrX	793569	7	INTRON	INTRON	TRAPPC2	ENSG00000196459.15	ENST00000359680.9:ENST00000380579.6:ENST00000683983.1:ENST00000683569.1:ENST00000458511.7:ENST00000519382.1:ENST00000519885.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	30	2	4.34648	4.480835	4.61519	0.0193566	0.00528365	0.108861	0.0656295
chrX	123876135	123876235	7716347	0	+	0.49	(0.476,0.515]	chrX	789403	152	INTRON	INTRON	XIAP	ENSG00000101966.13	ENST00000422098.5:ENST00000481776.5:ENST00000434753.7:ENST00000497906.5:ENST00000468691.5:ENST00000430625.1:ENST00000371199.8:ENST00000497640.1:ENST00000355640.3:ENST00000468503.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	30	2	4.34648	4.480835	4.61519	0.0193566	0.00528365	0.108861	0.0656295
chr11	985092	985172	4721691	0	+	0.5125	(0.476,0.515]	chr11	436685	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	AP2A2	ENSG00000183020.15	ENST00000332231.9:ENST00000448903.7:ENST00000525796.5:ENST00000529858.6:ENST00000693238.1:ENST00000687890.1:ENST00000687792.1:ENST00000528815.5:ENST00000528195.6:ENST00000690846.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	30	2	4.43093	4.48058	4.53023	0.0119748	0.00931369	0.0899583	0.0855292
chr11	9237160	9237259	4908790	0	-	0.484848	(0.476,0.515]	chr11	460107	292	INTRON	INTRON	DENND5A	ENSG00000184014.9	ENST00000328194.8:ENST00000681203.1:ENST00000530780.2:ENST00000679999.1:ENST00000680470.1:ENST00000680554.1:ENST00000681425.1:ENST00000679568.1:ENST00000679446.1:ENST00000680294.1:ENST00000680742.1:ENST00000680885.1:ENST00000530044.5:ENST00000526707.5:ENST00000532696.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	30	2	4.43093	4.48058	4.53023	0.0119748	0.00931369	0.0899583	0.0855292
chr4	118619595	118619692	2025025	0	+	0.484536	(0.476,0.515]	chr4	201337	11	INTRON	INTRON	ENSG00000260404	ENSG00000260404.4	ENST00000567913.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	30	2	4.43093	4.48058	4.53023	0.0119748	0.00931369	0.0899583	0.0855292
chr5	133087630	133087721	2488366	0	+	0.505495	(0.476,0.515]	chr5	237514	4	INTRON	INTRON	HSPA4	ENSG00000170606.16	ENST00000304858.7:ENST00000504328.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	30	2	4.43093	4.48058	4.53023	0.0119748	0.00931369	0.0899583	0.0855292
chr7	64924917	64925014	3321308	0	+	0.494845	(0.476,0.515]	chr7	308800	6	INTRON	INTRON	ZNF273	ENSG00000198039.12	ENST00000527278.5:ENST00000476120.2:ENST00000395375.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	30	2	4.43093	4.48058	4.53023	0.0119748	0.00931369	0.0899583	0.0855292
chr7	116980052	116980152	3386252	0	+	0.49	(0.476,0.515]	chr7	317132	116	INTRON	INTRON	ST7:ST7-OT4	ENSG00000004866.22:ENSG00000214188.9	ENST00000393446.6:ENST00000265437.9:ENST00000393451.7:ENST00000438863.5:ENST00000393449.5:ENST00000443979.5:ENST00000323984.8:ENST00000417919.5:ENST00000446490.5:ENST00000471110.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:nonsense_mediated_decay:lncRNA	0	30	2	4.43093	4.48058	4.53023	0.0119748	0.00931369	0.0899583	0.0855292
chr2	24710235	24710332	711462	0	+	0.515464	(0.515,0.57]	chr2	82288	20	INTRON	INTRON	NCOA1	ENSG00000084676.16	ENST00000348332.8:ENST00000406961.5:ENST00000405141.5:ENST00000407230.5:ENST00000288599.9:ENST00000395856.3:ENST00000486198.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	57	2	3.58035	4.480555000000001	5.38076	5.21239e-4	3.24968e-4	0.0204523	0.0165891
chr5	53988313	53988413	2617687	0	-	0.27	[0,0.28]	chr5	248835	763	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	77	2	3.2621000000000002	4.48038	5.69866	0.00367113	0.00175225	0.056059199999999997	0.0376491
chr16	3711350	3711450	6434416	0	-	0.47	(0.44,0.476]	chr16	619383	5	INTRON	INTRON	TRAP1	ENSG00000126602.11	ENST00000246957.10:ENST00000538171.5:ENST00000571804.5:ENST00000574941.5:ENST00000576106.5:ENST00000571011.1:ENST00000570403.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	67	2	3.50954	4.480255	5.45097	0.00116647	1.90652e-4	0.0312127	0.0120089
chr1	46268596	46268694	96423	0	+	0.244898	[0,0.28]	chr1	12915	6	INTRON	INTRON	RAD54L	ENSG00000085999.13	ENST00000442598.5:ENST00000671528.1:ENST00000371975.9:ENST00000655446.1:ENST00000473251.2:ENST00000476687.2:ENST00000664182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	86	2	2.86008	4.479875	6.09967	0.0177015	7.27783e-5	0.105304	0.00711523
chr4	146189656	146189754	2064334	0	+	0.27551	[0,0.28]	chr4	204294	1	UTR3	UTR3:EXON_MRNA	LSM6	ENSG00000164167.12	ENST00000515311.5:ENST00000296581.11:ENST00000649747.1:ENST00000502781.5:ENST00000504181.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	127	2	2.40162	4.47945	6.55728	0.00511828	6.87412e-5	0.064713	0.00736143
chr10	35033673	35033773	4600570	0	-	0.45	(0.44,0.476]	chr10	423797	4	SS3_PROX	SS3_PROX:INTRON	CUL2	ENSG00000108094.17	ENST00000626172.3:ENST00000374751.7:ENST00000374748.5:ENST00000374749.8:ENST00000690123.1:ENST00000537177.6:ENST00000374746.6:ENST00000691974.1:ENST00000688571.1:ENST00000690393.1:ENST00000690092.1:ENST00000374754.9:ENST00000688252.1:ENST00000691272.1:ENST00000688390.1:ENST00000687282.1:ENST00000691201.1:ENST00000687194.1:ENST00000691962.1:ENST00000691858.1:ENST00000691263.1:ENST00000688044.1:ENST00000687524.1:ENST00000673636.2:ENST00000692866.1:ENST00000693739.1:ENST00000686302.1:ENST00000685681.1:ENST00000421317.5:ENST00000684965.1:ENST00000691457.1:ENST00000688541.1:ENST00000689330.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	30	2	4.33899	4.479265	4.61954	0.0206616	0.00506805	0.110999	0.0646039
chr14	91318846	91318945	5954622	0	-	0.444444	(0.44,0.476]	chr14	565321	27	INTRON	INTRON	CCDC88C	ENSG00000015133.20	ENST00000389857.11	protein_coding	protein_coding	protein_coding	protein_coding	0	30	2	4.33899	4.479265	4.61954	0.0206616	0.00506805	0.110999	0.0646039
chr2	32408242	32408341	731297	0	+	0.606061	(0.57,1]	chr2	84319	13	INTRON	INTRON	BIRC6	ENSG00000115760.15	ENST00000421745.7:ENST00000648282.1	protein_coding	protein_coding	protein_coding	protein_coding	3	67	2	2.70667	4.479265	6.25186	7.21202e-4	7.04531e-8	0.0245208	1.11989e-4
chr2	39424494	39424594	1104173	0	-	0.47	(0.44,0.476]	chr2	118511	448	INTRON	INTRON	MAP4K3	ENSG00000011566.15	ENST00000263881.8:ENST00000341681.9:ENST00000429397.5:ENST00000437968.1:ENST00000484274.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	30	2	4.33899	4.479265	4.61954	0.0206616	0.00506805	0.110999	0.0646039
chr3	194428146	194428245	1890583	0	-	0.464646	(0.44,0.476]	chr3	189126	5	INTRON	INTRON	ATP13A3	ENSG00000133657.17	ENST00000687055.1:ENST00000645538.1:ENST00000645319.2:ENST00000690810.1:ENST00000429136.7:ENST00000645621.1:ENST00000685123.1:ENST00000642744.2:ENST00000439040.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	30	2	4.33899	4.479265	4.61954	0.0206616	0.00506805	0.110999	0.0646039
chr4	150846455	150846553	2270055	0	-	0.459184	(0.44,0.476]	chr4	220791	13	INTRON	INTRON	LRBA	ENSG00000198589.14	ENST00000357115.9:ENST00000651943.2:ENST00000510413.5:ENST00000509835.5:ENST00000651695.1:ENST00000651035.1:ENST00000507224.5:ENST00000502839.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	30	2	4.33899	4.479265	4.61954	0.0206616	0.00506805	0.110999	0.0646039
chr9	127812299	127812398	4202338	0	+	0.474747	(0.44,0.476]	chr9	383885	9	INTRON	INTRON	FPGS	ENSG00000136877.15	ENST00000393706.6:ENST00000630236.2:ENST00000373247.7:ENST00000373228.5:ENST00000460181.5:ENST00000373225.7:ENST00000488506.5:ENST00000467826.5:ENST00000475270.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	30	2	4.33899	4.479265	4.61954	0.0206616	0.00506805	0.110999	0.0646039
chr1	50439674	50439772	447028	0	-	0.428571	(0.408,0.44]	chr1	54147	28	UTR3	UTR3:EXON_MRNA	FAF1	ENSG00000185104.21	ENST00000396153.7	protein_coding	protein_coding	protein_coding	protein_coding	0	30	2	4.42713	4.479005	4.53088	0.0173083	0.00669275	0.104099	0.0738715
chr14	35747099	35747198	5871745	0	-	0.414141	(0.408,0.44]	chr14	557796	42	INTRON	INTRON	RALGAPA1	ENSG00000174373.17	ENST00000307138.10:ENST00000389698.7:ENST00000680220.1:ENST00000554259.6:ENST00000637992.1:ENST00000382366.7:ENST00000553892.2:ENST00000554652.5:ENST00000554704.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	30	2	4.42713	4.479005	4.53088	0.0173083	0.00669275	0.104099	0.0738715
chr14	96858205	96858298	5811485	0	+	0.430108	(0.408,0.44]	chr14	551074	13	INTRON	INTRON	VRK1	ENSG00000100749.9	ENST00000553683.2:ENST00000680538.1:ENST00000681195.1:ENST00000681524.1:ENST00000680084.1:ENST00000679533.1:ENST00000681598.1:ENST00000679727.1:ENST00000679758.1:ENST00000680509.1:ENST00000557222.6:ENST00000679977.1:ENST00000680387.1:ENST00000680335.1:ENST00000680683.1:ENST00000681474.1:ENST00000216639.8:ENST00000681363.1:ENST00000681538.1:ENST00000679736.1:ENST00000681176.1:ENST00000680922.1:ENST00000679903.1:ENST00000557352.2:ENST00000681101.1:ENST00000681419.1:ENST00000680348.1:ENST00000679941.1:ENST00000680849.1:ENST00000679770.1:ENST00000681493.1:ENST00000681778.1:ENST00000680993.1:ENST00000681355.1:ENST00000681695.1:ENST00000681344.1:ENST00000680007.1:ENST00000679918.1:ENST00000681785.1:ENST00000679816.1:ENST00000680756.1:ENST00000681249.1:ENST00000680526.1:ENST00000679365.1:ENST00000680851.1:ENST00000679506.1:ENST00000679650.1:ENST00000679462.1:ENST00000680724.1:ENST00000680339.1:ENST00000680384.1:ENST00000680222.1:ENST00000681077.1:ENST00000681061.1:ENST00000681677.1:ENST00000679843.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	30	2	4.42713	4.479005	4.53088	0.0173083	0.00669275	0.104099	0.0738715
chr16	68303525	68303607	6506527	0	-	0.414634	(0.408,0.44]	chr16	629918	1	SS5_PROX	SS5_PROX:INTRON	SLC7A6OS	ENSG00000103061.13	ENST00000568315.1:ENST00000263997.11:ENST00000561933.1:ENST00000561590.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	30	2	4.42713	4.479005	4.53088	0.0173083	0.00669275	0.104099	0.0738715
chr17	31143793	31143892	6591622	0	+	0.434343	(0.408,0.44]	chr17	641057	149	INTRON	INTRON	NF1	ENSG00000196712.20	ENST00000696138.1:ENST00000356175.7:ENST00000487476.5:ENST00000691014.1:ENST00000358273.9:ENST00000431387.8:ENST00000579081.5:ENST00000489712.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	30	2	4.42713	4.479005	4.53088	0.0173083	0.00669275	0.104099	0.0738715
chr2	231791173	231791273	1032820	0	+	0.42	(0.408,0.44]	chr2	110326	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	COPS7B	ENSG00000144524.18	ENST00000611614.4:ENST00000410024.5:ENST00000409295.5:ENST00000409091.5:ENST00000449784.5:ENST00000466901.5:ENST00000620578.4:ENST00000413197.5:ENST00000412591.5:ENST00000450501.5:ENST00000432387.5:ENST00000357490.6:ENST00000350033.8:ENST00000412922.6:ENST00000410017.5:ENST00000373608.7:ENST00000436564.5:ENST00000461350.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	30	2	4.42713	4.479005	4.53088	0.0173083	0.00669275	0.104099	0.0738715
chr7	105310370	105310469	3603120	0	-	0.424242	(0.408,0.44]	chr7	336161	34	INTRON	INTRON	SRPK2	ENSG00000135250.17	ENST00000393651.8:ENST00000482897.5:ENST00000460391.5:ENST00000462282.5:ENST00000465112.5:ENST00000482862.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	30	2	4.42713	4.479005	4.53088	0.0173083	0.00669275	0.104099	0.0738715
chr9	112103663	112103757	4316057	0	-	0.425532	(0.408,0.44]	chr9	396942	1	INTRON	INTRON	SUSD1	ENSG00000106868.17	ENST00000374270.8:ENST00000374263.7:ENST00000355396.7:ENST00000374264.6:ENST00000529933.5:ENST00000415074.1:ENST00000528773.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	30	2	4.42713	4.479005	4.53088	0.0173083	0.00669275	0.104099	0.0738715
chrX	77638446	77638546	7845969	0	-	0.42	(0.408,0.44]	chrX	800107	20	INTRON	INTRON	ATRX	ENSG00000085224.23	ENST00000373344.11:ENST00000395603.7:ENST00000480283.5:ENST00000623242.3:ENST00000460639.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	30	2	4.42713	4.479005	4.53088	0.0173083	0.00669275	0.104099	0.0738715
chrX	111723297	111723357	7702457	0	+	0.416667	(0.408,0.44]	chrX	788290	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ALG13	ENSG00000101901.12	ENST00000394780.8:ENST00000251943.8:ENST00000610588.4:ENST00000621367.4:ENST00000624161.3:ENST00000636363.1:ENST00000495283.5:ENST00000623144.3:ENST00000470971.5:ENST00000623148.3:ENST00000436609.5:ENST00000623622.1:ENST00000490774.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	30	2	4.42713	4.479005	4.53088	0.0173083	0.00669275	0.104099	0.0738715
chr17	59648832	59648901	6641857	0	+	0.449275	(0.44,0.476]	chr17	648543	3	SS5_PROX	SS5_PROX:INTRON	CLTC	ENSG00000141367.12	ENST00000621829.4:ENST00000393043.5:ENST00000269122.8:ENST00000579456.5:ENST00000584313.5:ENST00000472129.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	30	2	4.43525	4.478975	4.5227	0.0128818	0.00897296	0.0926667	0.0849778
chr2	230782927	230783026	1030864	0	+	0.454545	(0.44,0.476]	chr2	110016	31	INTRON	INTRON	CAB39	ENSG00000135932.12	ENST00000258418.10:ENST00000409788.7:ENST00000410084.7:ENST00000484398.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	30	2	4.43525	4.478975	4.5227	0.0128818	0.00897296	0.0926667	0.0849778
chr6	4903354	4903453	2792134	0	+	0.444444	(0.44,0.476]	chr6	263614	106	INTRON	INTRON	CDYL	ENSG00000153046.18	ENST00000328908.9:ENST00000440139.5:ENST00000397588.8:ENST00000472453.5:ENST00000449732.6:ENST00000343762.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	30	2	4.43525	4.478975	4.5227	0.0128818	0.00897296	0.0926667	0.0849778
chr6	36971281	36971378	3089653	0	-	0.474227	(0.44,0.476]	chr6	289031	7	EXON_MRNA	EXON_MRNA:INTRON	MTCH1	ENSG00000137409.21	ENST00000695055.1:ENST00000695048.1:ENST00000695049.1:ENST00000695050.1:ENST00000695051.1:ENST00000695052.1:ENST00000695053.1:ENST00000695054.1:ENST00000695046.1:ENST00000695047.1:ENST00000695045.1:ENST00000695044.1:ENST00000695043.1:ENST00000695042.1:ENST00000373616.9:ENST00000373627.10:ENST00000695056.1:ENST00000695059.1:ENST00000695060.1:ENST00000695058.1:ENST00000695057.1:ENST00000695066.1:ENST00000695067.1:ENST00000695068.1:ENST00000695069.1:ENST00000695063.1:ENST00000695064.1:ENST00000695065.1:ENST00000695062.1:ENST00000695061.1:ENST00000695072.1:ENST00000695070.1:ENST00000695071.1:ENST00000695073.1:ENST00000695074.1:ENST00000695075.1:ENST00000695076.1:ENST00000418541.6:ENST00000460219.3:ENST00000492754.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	30	2	4.43525	4.478975	4.5227	0.0128818	0.00897296	0.0926667	0.0849778
chr6	149604260	149604360	3245675	0	-	0.45	(0.44,0.476]	chr6	301577	2	SS5_PROX	SS5_PROX:INTRON	KATNA1	ENSG00000186625.14	ENST00000335643.12:ENST00000367411.7:ENST00000335647.9:ENST00000494504.5:ENST00000470620.1:ENST00000444282.5:ENST00000420200.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	30	2	4.43525	4.478975	4.5227	0.0128818	0.00897296	0.0926667	0.0849778
chr7	16608930	16609029	3494655	0	-	0.444444	(0.44,0.476]	chr7	326306	37	INTRON	INTRON	ANKMY2	ENSG00000106524.9	ENST00000306999.7:ENST00000447802.3:ENST00000628652.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	30	2	4.43525	4.478975	4.5227	0.0128818	0.00897296	0.0926667	0.0849778
chr9	123654410	123654509	4343259	0	-	0.464646	(0.44,0.476]	chr9	399090	19	INTRON	INTRON	DENND1A	ENSG00000119522.17	ENST00000373624.6:ENST00000473039.5:ENST00000394215.7:ENST00000373620.7:ENST00000373618.1:ENST00000474676.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	30	2	4.43525	4.478975	4.5227	0.0128818	0.00897296	0.0926667	0.0849778
chr4	126569407	126569507	2236403	0	-	0.36	(0.35,0.378]	chr4	219023	1039	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	4	241	2	4.28097	4.478899999999999	4.67683	4.5747e-6	4.68003e-8	0.00157482	8.91482e-5
chr1	65063426	65063526	475524	0	-	0.35	(0.32,0.35]	chr1	57245	52	INTRON	INTRON	JAK1	ENSG00000162434.13	ENST00000672434.1:ENST00000671954.1:ENST00000673502.1:ENST00000672751.1:ENST00000672099.1	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	3.77344	4.478795	5.18415	0.0596635	0.00333629	0.189982	0.0512081
chr4	56476984	56477078	1963016	0	+	0.329787	(0.32,0.35]	chr4	196948	4	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	SRP72	ENSG00000174780.17	ENST00000642900.1:ENST00000510663.6:ENST00000505314.2:ENST00000646537.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	36	2	3.77344	4.478795	5.18415	0.0596635	0.00333629	0.189982	0.0512081
chr19	902434	902518	7110829	0	-	0.238095	[0,0.28]	chr19	714169	1	SSB_ADJ	SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	R3HDM4	ENSG00000198858.10	ENST00000589428.5:ENST00000361574.10:ENST00000587975.2:ENST00000590454.2:ENST00000589445.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	78	2	3.09587	4.47876	5.86165	0.00651565	0.00101071	0.0735232	0.0291154
chr8	9031783	9031880	3695855	0	+	0.597938	(0.57,1]	chr8	342942	19	UTR3	UTR3:EXON_MRNA:INTRON	ERI1	ENSG00000104626.15	ENST00000519292.5:ENST00000250263.8:ENST00000520332.5:ENST00000518663.1:ENST00000522612.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	65	2	2.96471	4.47866	5.99261	1.58729e-4	5.25293e-7	0.0108333	4.21981e-4
chr2	191678223	191678321	960360	0	+	0.571429	(0.57,1]	chr2	104274	2	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	NABP1	ENSG00000173559.15	ENST00000491331.5:ENST00000307834.9:ENST00000674262.1:ENST00000674360.1:ENST00000674406.1:ENST00000674414.1:ENST00000410026.7:ENST00000674172.1:ENST00000674187.1:ENST00000307849.7:ENST00000425611.9:ENST00000462712.5:ENST00000451500.5:ENST00000409510.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	217	2	3.94392	4.478505	5.01309	1.03873e-8	1.7365e-12	3.51053e-5	5.44525e-8
chr15	75577513	75577613	6225289	0	-	0.38	(0.378,0.408]	chr15	594641	499	INTRON	INTRON	PTPN9	ENSG00000169410.11	ENST00000618819.5	protein_coding	protein_coding	protein_coding	protein_coding	2	92	2	2.89518	4.47805	6.06092	0.00190046	9.1834e-6	0.0393643	0.00217645
chr4	105443400	105443499	2216374	0	-	0.323232	(0.32,0.35]	chr4	217248	50	INTRON	INTRON	PPA2	ENSG00000138777.20	ENST00000341695.10:ENST00000348706.9:ENST00000509031.5:ENST00000351450.10:ENST00000354147.7:ENST00000432483.6:ENST00000515567.5:ENST00000503171.5:ENST00000510015.5:ENST00000509426.5:ENST00000508518.5:ENST00000514209.5:ENST00000506815.5:ENST00000457404.6:ENST00000502833.5:ENST00000504028.5:ENST00000502596.5:ENST00000513649.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	68	2	3.57731	4.47782	5.37833	0.00174321	7.67492e-4	0.0375363	0.0254532
chr2	97163591	97163686	831361	0	+	0.621053	(0.57,1]	chr2	93024	11	INTRON	INTRON	ANKRD36	ENSG00000135976.21	ENST00000420699.9:ENST00000652721.1:ENST00000461153.7	protein_coding	protein_coding	protein_coding	protein_coding	1	43	2	3.75165	4.477805	5.20396	1.54884e-4	5.65393e-5	0.0113252	0.00613846
chr7	157199822	157199921	3454561	0	+	0.222222	[0,0.28]	chr7	322959	71	INTRON	INTRON	UBE3C	ENSG00000009335.18	ENST00000348165.10	protein_coding	protein_coding	protein_coding	protein_coding	1	77	2	3.48025	4.477695	5.47514	0.00354561	0.00162172	0.0529186	0.0369782
chr3	123921711	123921811	1803763	0	-	0.27	[0,0.28]	chr3	181224	56	INTRON	INTRON	CCDC14	ENSG00000175455.16	ENST00000463996.1:ENST00000479903.5:ENST00000409697.8:ENST00000488653.6:ENST00000485727.5:ENST00000495381.5:ENST00000409657.5:ENST00000489746.5:ENST00000433542.7:ENST00000310351.8:ENST00000483247.1:ENST00000419247.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	77	2	3.2223	4.47753	5.73276	0.00422777	0.00156565	0.0595466	0.0360583
chr7	157199123	157199222	3454554	0	+	0.272727	[0,0.28]	chr7	322959	64	INTRON	INTRON	UBE3C	ENSG00000009335.18	ENST00000348165.10	protein_coding	protein_coding	protein_coding	protein_coding	1	77	2	3.2223	4.47753	5.73276	0.00422777	0.00156565	0.0595466	0.0360583
chr16	75573207	75573307	6391098	0	+	0.35	(0.32,0.35]	chr16	614584	46	INTRON	INTRON	GABARAPL2	ENSG00000034713.8	ENST00000037243.7:ENST00000563744.1:ENST00000568455.1	protein_coding	protein_coding	protein_coding	protein_coding	1	70	2	3.82296	4.477095	5.13123	0.00394704	2.45656e-4	0.0548259	0.0138769
chr7	75461009	75461109	3558677	0	-	0.38	(0.378,0.408]	chr7	331545	184	INTRON	INTRON	POM121C	ENSG00000272391.6	ENST00000615331.5:ENST00000398379.2	protein_coding	protein_coding	protein_coding	protein_coding	1	64	2	3.72397	4.476605	5.22924	0.00172721	3.23378e-4	0.0374701	0.0159645
chr11	47478676	47478776	4949637	0	-	0.4	(0.378,0.408]	chr11	464165	4	SS5_PROX	SS5_PROX:INTRON	CELF1	ENSG00000149187.19	ENST00000310513.10:ENST00000687097.1:ENST00000395290.6:ENST00000358597.7:ENST00000395292.6:ENST00000361904.7:ENST00000531165.5:ENST00000532048.5:ENST00000422993.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	31	2	4.10661	4.47644	4.84627	0.0399023	0.00254319	0.143072	0.0465056
chr11	73788292	73788392	4825169	0	+	0.38	(0.378,0.408]	chr11	450281	3	SS5_PROX	SS5_PROX:INTRON	MRPL48	ENSG00000175581.14	ENST00000508278.6:ENST00000310614.12:ENST00000540162.5:ENST00000544140.5:ENST00000544819.5:ENST00000497094.6:ENST00000411840.6:ENST00000398483.7:ENST00000535277.5:ENST00000542303.5:ENST00000537007.5:ENST00000543058.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	31	2	4.10661	4.47644	4.84627	0.0399023	0.00254319	0.143072	0.0465056
chr12	26931383	26931482	5298668	0	-	0.40404	(0.378,0.408]	chr12	504041	21	INTRON	INTRON	INTS13	ENSG00000064102.15	ENST00000261191.12:ENST00000544548.5:ENST00000538727.5:ENST00000537336.1	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.10661	4.47644	4.84627	0.0399023	0.00254319	0.143072	0.0465056
chr14	73952063	73952160	5787155	0	+	0.391753	(0.378,0.408]	chr14	548273	11	INTRON	INTRON	COQ6	ENSG00000119723.17	ENST00000394026.8:ENST00000554341.6:ENST00000553462.6:ENST00000629426.2:ENST00000556300.6:ENST00000557584.5:ENST00000334571.7:ENST00000554920.5:ENST00000557205.6:ENST00000555552.5:ENST00000554193.5:ENST00000553922.5:ENST00000554217.5:ENST00000555196.5:ENST00000554320.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	31	2	4.10661	4.47644	4.84627	0.0399023	0.00254319	0.143072	0.0465056
chr19	52889147	52889246	7208792	0	-	0.393939	(0.378,0.408]	chr19	731663	5	INTRON	INTRON	ZNF320	ENSG00000182986.15	ENST00000673631.1:ENST00000594408.3:ENST00000391781.6:ENST00000600930.1:ENST00000682928.1:ENST00000595635.5:ENST00000597091.5:ENST00000593618.5:ENST00000594741.5:ENST00000597265.5:ENST00000597111.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	31	2	4.10661	4.47644	4.84627	0.0399023	0.00254319	0.143072	0.0465056
chr6	154738783	154738882	3001870	0	+	0.383838	(0.378,0.408]	chr6	280731	45	INTRON	INTRON	SCAF8	ENSG00000213079.10	ENST00000367186.7:ENST00000417268.3:ENST00000461219.5:ENST00000367178.8:ENST00000464628.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	31	2	4.10661	4.47644	4.84627	0.0399023	0.00254319	0.143072	0.0465056
chrX	44988491	44988591	7649758	0	+	0.38	(0.378,0.408]	chrX	782744	114	INTRON	INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000675440.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000621147.5:ENST00000475233.1:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	31	2	4.10661	4.47644	4.84627	0.0399023	0.00254319	0.143072	0.0465056
chr16	9099189	9099289	6285447	0	+	0.44	(0.408,0.44]	chr16	601924	58	INTRON	INTRON	C16orf72	ENSG00000182831.12	ENST00000327827.12:ENST00000574285.2	protein_coding	protein_coding	protein_coding	protein_coding	3	108	2	2.67325	4.47629	6.27933	0.00143252	2.04013e-6	0.0340925	8.78026e-4
chr11	1305029	1305127	4890852	0	-	0.418367	(0.408,0.44]	chr11	458116	24	INTRON	INTRON	TOLLIP	ENSG00000078902.16	ENST00000317204.11:ENST00000525159.5:ENST00000263646.11:ENST00000530506.5:ENST00000527938.5:ENST00000530541.1:ENST00000527746.5:ENST00000527638.1:ENST00000532551.1:ENST00000530821.1:ENST00000527085.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	30	2	4.33238	4.476235	4.62009	0.0218901	0.00504155	0.11491	0.0646039
chr12	89446846	89446946	5379914	0	-	0.41	(0.408,0.44]	chr12	513232	175	INTRON	INTRON	POC1B	ENSG00000139323.14	ENST00000313546.8:ENST00000393179.8:ENST00000546740.5:ENST00000549035.1:ENST00000547496.5:ENST00000548715.5:ENST00000549504.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	30	2	4.33238	4.476235	4.62009	0.0218901	0.00504155	0.11491	0.0646039
chr15	67112319	67112419	6052314	0	+	0.44	(0.408,0.44]	chr15	576266	129	INTRON	INTRON	SMAD3	ENSG00000166949.17	ENST00000559460.5:ENST00000327367.9:ENST00000679624.1:ENST00000559937.1:ENST00000559092.1:ENST00000560175.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	30	2	4.33238	4.476235	4.62009	0.0218901	0.00504155	0.11491	0.0646039
chr16	53175022	53175122	6351924	0	+	0.43	(0.408,0.44]	chr16	609688	171	INTRON	INTRON	CHD9	ENSG00000177200.18	ENST00000447540.6:ENST00000566029.5:ENST00000615216.4:ENST00000565832.5:ENST00000564845.5:ENST00000398510.7:ENST00000564255.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	30	2	4.33238	4.476235	4.62009	0.0218901	0.00504155	0.11491	0.0646039
chr20	49221798	49221898	7284347	0	+	0.42	(0.408,0.44]	chr20	740952	2	SS5_PROX	SS5_PROX:INTRON	DDX27	ENSG00000124228.15	ENST00000484427.5:ENST00000618172.5:ENST00000462328.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	30	2	4.33238	4.476235	4.62009	0.0218901	0.00504155	0.11491	0.0646039
chr4	48609405	48609486	2137900	0	-	0.419753	(0.408,0.44]	chr4	210949	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	FRYL	ENSG00000075539.15	ENST00000358350.9:ENST00000503238.6:ENST00000507711.5:ENST00000673760.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	30	2	4.33238	4.476235	4.62009	0.0218901	0.00504155	0.11491	0.0646039
chr7	149200541	149200640	3445378	0	+	0.383838	(0.378,0.408]	chr7	321367	14	INTRON	INTRON	ZNF282	ENSG00000170265.12	ENST00000610704.5:ENST00000479907.1	protein_coding	protein_coding	protein_coding	protein_coding	1	64	2	3.27907	4.4762249999999995	5.67338	0.0023379	3.05145e-4	0.0442989	0.0161236
chr11	62125160	62125260	4797885	0	+	0.43	(0.408,0.44]	chr11	444466	6	INTRON	INTRON	INCENP	ENSG00000149503.13	ENST00000278849.4:ENST00000533896.5:ENST00000394818.8:ENST00000528037.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	30	2	4.4358	4.47592	4.51604	0.0137419	0.00893097	0.0949306	0.0849778
chr17	49620120	49620220	6792904	0	-	0.44	(0.408,0.44]	chr17	670267	1	SS5_PROX	SS5_PROX:INTRON	SPOP	ENSG00000121067.19	ENST00000393328.6:ENST00000504102.6:ENST00000347630.6:ENST00000665825.1:ENST00000514121.6:ENST00000659760.1:ENST00000509079.6:ENST00000671445.1:ENST00000513080.6:ENST00000503676.5:ENST00000505581.5:ENST00000506399.5:ENST00000507970.5:ENST00000515508.6:ENST00000504212.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	30	2	4.4358	4.47592	4.51604	0.0137419	0.00893097	0.0949306	0.0849778
chrX	20139789	20139884	7772189	0	-	0.421053	(0.408,0.44]	chrX	794444	8	INTRON	INTRON	EIF1AX	ENSG00000173674.11	ENST00000379607.10:ENST00000379593.1	protein_coding	protein_coding	protein_coding	protein_coding	0	30	2	4.4358	4.47592	4.51604	0.0137419	0.00893097	0.0949306	0.0849778
chr1	26730555	26730651	51520	0	+	0.3125	(0.28,0.32]	chr1	6553	3	INTRON	INTRON	ARID1A	ENSG00000117713.21	ENST00000430799.7:ENST00000324856.13:ENST00000637465.1:ENST00000457599.6:ENST00000524572.1:ENST00000374152.7:ENST00000636219.1	protein_coding	protein_coding	protein_coding	protein_coding	1	72	2	3.65016	4.475845	5.30153	0.00332518	6.39301e-4	0.0512081	0.0228666
chr4	122278778	122278877	2033866	0	+	0.414141	(0.408,0.44]	chr4	202056	27	EXON_MRNA	EXON_MRNA:INTRON	KIAA1109	ENSG00000138688.17	ENST00000679879.1:ENST00000264501.8:ENST00000684987.1:ENST00000693420.1:ENST00000693334.1:ENST00000690536.1:ENST00000388738.8:ENST00000419325.5:ENST00000686093.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	93	2	2.49218	4.4757549999999995	6.45933	0.00855168	6.42507e-7	0.0780217	4.38818e-4
chr11	118763806	118763896	5046091	0	-	0.3	(0.28,0.32]	chr11	475775	1	INTRON	INTRON	DDX6	ENSG00000110367.14	ENST00000534980.7:ENST00000620157.4:ENST00000526070.2	protein_coding	protein_coding	protein_coding	protein_coding	2	109	2	2.36963	4.47572	6.58181	0.0157022	2.11644e-6	0.101453	9.04525e-4
chr3	9658038	9658137	1359853	0	+	0.40404	(0.378,0.408]	chr3	142848	39	INTRON	INTRON	MTMR14	ENSG00000163719.20	ENST00000353332.9:ENST00000420925.5:ENST00000447144.5:ENST00000296003.9:ENST00000430020.5:ENST00000351233.9:ENST00000416864.5:ENST00000437997.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	70	2	2.95459	4.47546	5.99633	0.00957623	1.32573e-5	0.0820838	0.00270432
chr16	84721602	84721702	6410119	0	+	0.56	(0.515,0.57]	chr16	615272	47	INTRON	INTRON	USP10	ENSG00000103194.16	ENST00000562743.5:ENST00000540269.6:ENST00000563892.5:ENST00000562092.1:ENST00000569511.5:ENST00000219473.12:ENST00000570191.5:ENST00000563048.5:ENST00000562283.5:ENST00000563386.5:ENST00000569038.5:ENST00000570053.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	58	2	3.84625	4.475365	5.10448	0.0010345	1.34155e-4	0.029231300000000002	0.00998237
chr2	28775351	28775450	724885	0	+	0.535354	(0.515,0.57]	chr2	83720	228	INTRON	INTRON	PPP1CB	ENSG00000213639.10	ENST00000455580.5:ENST00000420282.5:ENST00000441461.5:ENST00000427786.1:ENST00000358506.6:ENST00000296122.10:ENST00000395366.3:ENST00000464273.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	58	2	3.84625	4.475365	5.10448	0.0010345	1.34155e-4	0.029231300000000002	0.00998237
chr11	33145771	33145870	4940822	0	-	0.383838	(0.378,0.408]	chr11	462878	4	INTRON	INTRON	CSTF3	ENSG00000176102.13	ENST00000323959.9:ENST00000524827.6:ENST00000526480.1:ENST00000438862.6:ENST00000431742.2:ENST00000524556.1:ENST00000524775.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	31	2	4.21226	4.475325	4.73839	0.0177403	0.00837252	0.11319	0.0774402
chr22	17823759	17823859	7548624	0	-	0.38	(0.378,0.408]	chr22	771578	3	INTRON	INTRON	MICAL3	ENSG00000243156.9	ENST00000441493.7:ENST00000672019.1:ENST00000498573.5:ENST00000578984.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	31	2	4.21226	4.475325	4.73839	0.0177403	0.00837252	0.11319	0.0774402
chr5	65967312	65967409	2371254	0	+	0.381443	(0.378,0.408]	chr5	228479	7	EXON_LNCRNA	EXON_LNCRNA:INTRON	ERBIN:ENSG00000286314	ENSG00000112851.15:ENSG00000286314.1	ENST00000380943.6:ENST00000507490.1:ENST00000416865.6:ENST00000380935.5:ENST00000284037.10:ENST00000380938.6:ENST00000511297.5:ENST00000506030.5:ENST00000663947.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA:processed_transcript	0	31	2	4.21226	4.475325	4.73839	0.0177403	0.00837252	0.11319	0.0774402
chr7	36431842	36431942	3307444	0	+	0.4	(0.378,0.408]	chr7	307191	31	INTRON	INTRON	ANLN	ENSG00000011426.11	ENST00000396068.6:ENST00000265748.7:ENST00000428612.5:ENST00000457743.1	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.21226	4.475325	4.73839	0.0177403	0.00837252	0.11319	0.0774402
chr7	74853200	74853299	3556381	0	-	0.40404	(0.378,0.408]	chr7	331152	17	INTRON	INTRON	STAG3L2	ENSG00000277072.5	ENST00000651031.1:ENST00000650988.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	31	2	4.21226	4.475325	4.73839	0.0177403	0.00837252	0.11319	0.0774402
chr8	89983255	89983355	3985808	0	-	0.4	(0.378,0.408]	chr8	365095	4	SS3_PROX	SS3_PROX:INTRON	NBN	ENSG00000104320.14	ENST00000265433.8:ENST00000396252.6:ENST00000409330.5:ENST00000519426.5:ENST00000523444.1:ENST00000517337.1:ENST00000494804.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	31	2	4.21226	4.475325	4.73839	0.0177403	0.00837252	0.11319	0.0774402
chrX	134488407	134488506	7724355	0	+	0.40404	(0.378,0.408]	chrX	790172	15	INTRON	INTRON	HPRT1	ENSG00000165704.15	ENST00000298556.8:ENST00000462974.5:ENST00000475720.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	31	2	4.21226	4.475325	4.73839	0.0177403	0.00837252	0.11319	0.0774402
chr5	88218564	88218664	2669232	0	-	0.55	(0.515,0.57]	chr5	252658	110	INTRON	INTRON	TMEM161B	ENSG00000164180.14	ENST00000514135.5:ENST00000296595.11:ENST00000511087.5:ENST00000510089.5:ENST00000506536.5:ENST00000511218.5:ENST00000512429.5:ENST00000507872.1:ENST00000509387.5:ENST00000503755.5:ENST00000513487.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	30	2	4.04086	4.47499	4.90912	0.0197045	0.0021669	0.120063	0.0417866
chr2	26364885	26364940	715201	0	+	0.381818	(0.378,0.408]	chr2	82580	2	CDS	CDS:EXON_MRNA	SELENOI	ENSG00000138018.19	ENST00000442141.5:ENST00000260585.12:ENST00000447170.1	protein_coding	protein_coding	protein_coding	protein_coding	2	90	2	3.61929	4.474485	5.32968	0.00119786	3.16433e-5	0.0315806	0.00449886
chr11	12865539	12865638	4741497	0	+	0.30303	(0.28,0.32]	chr11	439091	1	INTRON	INTRON	TEAD1	ENSG00000187079.20	ENST00000527636.7:ENST00000334310.10:ENST00000527575.6	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.4263	4.474315000000001	4.52233	0.0330296	0.0129279	0.133816	0.0990564
chr17	20012450	20012550	6571816	0	+	0.29	(0.28,0.32]	chr17	639047	14	INTRON	INTRON	SPECC1	ENSG00000128487.19	ENST00000677148.1:ENST00000679048.1:ENST00000678019.1:ENST00000678315.1:ENST00000678321.1:ENST00000676570.1:ENST00000678651.1:ENST00000679049.1:ENST00000472876.5:ENST00000467722.3:ENST00000583528.6:ENST00000680019.1:ENST00000395527.9:ENST00000681593.1:ENST00000680830.1:ENST00000680124.1:ENST00000583482.7:ENST00000679255.1:ENST00000681202.1:ENST00000677914.1:ENST00000578321.2:ENST00000680374.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	32	2	4.4263	4.474315000000001	4.52233	0.0330296	0.0129279	0.133816	0.0990564
chr18	796998	797097	6940553	0	-	0.30303	(0.28,0.32]	chr18	686525	87	INTRON	INTRON	YES1	ENSG00000176105.14	ENST00000584307.5:ENST00000314574.5:ENST00000577611.1:ENST00000581960.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	32	2	4.4263	4.474315000000001	4.52233	0.0330296	0.0129279	0.133816	0.0990564
chr2	58218623	58218721	1126523	0	-	0.316327	(0.28,0.32]	chr2	120943	8	INTRON	INTRON	FANCL	ENSG00000115392.13	ENST00000696400.1:ENST00000403295.8:ENST00000696492.1:ENST00000427708.7:ENST00000696314.1:ENST00000696315.1:ENST00000696454.1:ENST00000696508.1:ENST00000696548.1:ENST00000696542.1:ENST00000696319.1:ENST00000403676.6:ENST00000696433.1:ENST00000696434.1:ENST00000696499.1:ENST00000696564.1:ENST00000402135.8:ENST00000696546.1:ENST00000233741.9:ENST00000696316.1:ENST00000696378.1:ENST00000696435.1:ENST00000696493.1:ENST00000696543.1:ENST00000696544.1:ENST00000696545.1:ENST00000696565.1:ENST00000696620.1:ENST00000696621.1:ENST00000696635.1:ENST00000696364.1:ENST00000696634.1:ENST00000696317.1:ENST00000696622.1:ENST00000696467.1:ENST00000696547.1:ENST00000449070.6:ENST00000696305.1:ENST00000417361.2:ENST00000696338.1:ENST00000696361.1:ENST00000696318.1:ENST00000696371.1:ENST00000696409.1:ENST00000696410.1:ENST00000696455.1:ENST00000696468.1:ENST00000696527.1:ENST00000696567.1:ENST00000696324.1:ENST00000696566.1:ENST00000696623.1:ENST00000446381.6:ENST00000696469.1:ENST00000696624.1:ENST00000696411.1:ENST00000470506.2:ENST00000696358.1:ENST00000696373.1:ENST00000696394.1:ENST00000696320.1:ENST00000696395.1:ENST00000696341.1:ENST00000696340.1:ENST00000696374.1:ENST00000696396.1:ENST00000696342.1:ENST00000696325.1:ENST00000696399.1:ENST00000696398.1:ENST00000696306.1:ENST00000696397.1:ENST00000696360.1:ENST00000696344.1:ENST00000696343.1:ENST00000696362.1:ENST00000696528.1:ENST00000696326.1:ENST00000696625.1:ENST00000696510.1:ENST00000696438.1:ENST00000696496.1:ENST00000696509.1:ENST00000696569.1:ENST00000696457.1:ENST00000696458.1:ENST00000696473.1:ENST00000696495.1:ENST00000696415.1:ENST00000696472.1:ENST00000696459.1:ENST00000696416.1:ENST00000696530.1:ENST00000696460.1:ENST00000696570.1:ENST00000696531.1:ENST00000696307.1:ENST00000696345.1:ENST00000696377.1:ENST00000696417.1:ENST00000696594.1:ENST00000696595.1:ENST00000696379.1:ENST00000696346.1:ENST00000696380.1:ENST00000696347.1:ENST00000696461.1:ENST00000696596.1:ENST00000696549.1:ENST00000696597.1:ENST00000696550.1:ENST00000696598.1:ENST00000696321.1:ENST00000696476.1:ENST00000696477.1:ENST00000696511.1:ENST00000481670.3:ENST00000696403.1:ENST00000696551.1:ENST00000696308.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	32	2	4.4263	4.474315000000001	4.52233	0.0330296	0.0129279	0.133816	0.0990564
chr21	6996018	6996116	7425985	0	-	0.306122	(0.28,0.32]	chr21	757539	3	INTRON	INTRON	ENSG00000280018	ENSG00000280018.4	ENST00000623165.3:ENST00000624519.1:ENST00000624728.1:ENST00000623347.1	lncRNA	lncRNA	lncRNA	lncRNA	0	32	2	4.4263	4.474315000000001	4.52233	0.0330296	0.0129279	0.133816	0.0990564
chr22	42967879	42967979	7597879	0	-	0.32	(0.28,0.32]	chr22	778194	81	INTRON	INTRON	PACSIN2	ENSG00000100266.19	ENST00000263246.8:ENST00000453643.5:ENST00000422336.5:ENST00000445706.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	32	2	4.4263	4.474315000000001	4.52233	0.0330296	0.0129279	0.133816	0.0990564
chr3	20063345	20063445	1376656	0	+	0.3	(0.28,0.32]	chr3	145087	222	INTRON	INTRON	KAT2B	ENSG00000114166.8	ENST00000263754.5:ENST00000426228.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	32	2	4.4263	4.474315000000001	4.52233	0.0330296	0.0129279	0.133816	0.0990564
chr7	129610532	129610632	3636646	0	-	0.31	(0.28,0.32]	chr7	338154	61	EXON_LNCRNA	EXON_LNCRNA	ENSG00000273329	ENSG00000273329.1	ENST00000608694.1	lncRNA	lncRNA	lncRNA	lncRNA	0	32	2	4.4263	4.474315000000001	4.52233	0.0330296	0.0129279	0.133816	0.0990564
chr7	132880761	132880861	3643868	0	-	0.3	(0.28,0.32]	chr7	338836	419	INTRON	INTRON	CHCHD3	ENSG00000106554.13	ENST00000262570.10:ENST00000448878.6:ENST00000496427.5:ENST00000423635.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	32	2	4.4263	4.474315000000001	4.52233	0.0330296	0.0129279	0.133816	0.0990564
chr7	158744217	158744316	3688947	0	-	0.30303	(0.28,0.32]	chr7	342335	1	INTRON	INTRON	ESYT2	ENSG00000117868.18	ENST00000251527.10:ENST00000275418.13:ENST00000652148.1	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.4263	4.474315000000001	4.52233	0.0330296	0.0129279	0.133816	0.0990564
chrX	152731749	152731846	7910004	0	-	0.28866000000000003	(0.28,0.32]	chrX	804878	32	INTRON	INTRON	CSAG1	ENSG00000198930.13	ENST00000370287.7:ENST00000452779.3:ENST00000361211.9:ENST00000370291.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	32	2	4.4263	4.474315000000001	4.52233	0.0330296	0.0129279	0.133816	0.0990564
chr1	147249344	147249443	212278	0	+	0.232323	[0,0.28]	chr1	23477	58	INTRON	INTRON	CHD1L	ENSG00000131778.20	ENST00000652587.1:ENST00000652616.1:ENST00000652494.1:ENST00000651207.1:ENST00000650721.1:ENST00000651226.1:ENST00000652161.1:ENST00000651510.1:ENST00000361293.10:ENST00000652278.1:ENST00000369259.4:ENST00000467213.5:ENST00000369258.8:ENST00000622533.4:ENST00000651410.1:ENST00000652486.1:ENST00000652346.1:ENST00000651407.1:ENST00000650828.1:ENST00000651070.1:ENST00000650714.1:ENST00000651420.1:ENST00000652357.1:ENST00000488864.5:ENST00000652188.1:ENST00000651820.1:ENST00000651231.1:ENST00000492728.1:ENST00000651206.1:ENST00000431239.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	34	2	4.1879	4.47377	4.75964	0.0396579	0.0232081	0.161534	0.118148
chr1	160249618	160249718	571482	0	-	0.23	[0,0.28]	chr1	69176	52	INTRON	INTRON	DCAF8	ENSG00000132716.19	ENST00000326837.6:ENST00000368073.7:ENST00000368074.6:ENST00000461888.5:ENST00000475733.5:ENST00000610139.5:ENST00000447377.5:ENST00000495887.1:ENST00000440682.5:ENST00000407642.6:ENST00000419626.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	34	2	4.1879	4.47377	4.75964	0.0396579	0.0232081	0.161534	0.118148
chr2	168871340	168871430	1259591	0	-	0.188889	[0,0.28]	chr2	133364	6	UTR3	UTR3:EXON_MRNA:INTRON	SPC25	ENSG00000152253.9	ENST00000479309.6:ENST00000282074.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	34	2	4.1879	4.47377	4.75964	0.0396579	0.0232081	0.161534	0.118148
chr20	50751276	50751375	7286874	0	+	0.20202	[0,0.28]	chr20	741306	9	UTR3	UTR3:EXON_MRNA:INTRON	PARD6B	ENSG00000124171.9	ENST00000371610.7:ENST00000396039.1	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.1879	4.47377	4.75964	0.0396579	0.0232081	0.161534	0.118148
chr3	184011771	184011871	1882565	0	-	0.28	[0,0.28]	chr3	188224	14	INTRON	INTRON	ABCC5	ENSG00000114770.17	ENST00000334444.11:ENST00000265586.10:ENST00000437205.5:ENST00000382494.6:ENST00000392579.6:ENST00000443376.5:ENST00000427120.6:ENST00000438979.6:ENST00000437341.5:ENST00000446941.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	34	2	4.1879	4.47377	4.75964	0.0396579	0.0232081	0.161534	0.118148
chr6	163540017	163540117	3032967	0	+	0.21	[0,0.28]	chr6	282593	45	INTRON	INTRON	QKI	ENSG00000112531.17	ENST00000361758.8:ENST00000453779.6:ENST00000275262.11:ENST00000392127.6:ENST00000361752.8:ENST00000361195.6:ENST00000424802.7:ENST00000545607.5:ENST00000537041.5:ENST00000544823.5:ENST00000537883.5:ENST00000540719.1:ENST00000544361.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	34	2	4.1879	4.47377	4.75964	0.0396579	0.0232081	0.161534	0.118148
chr19	21450761	21450859	7158711	0	-	0.438776	(0.408,0.44]	chr19	723691	10	INTRON	INTRON	ENSG00000268119	ENSG00000268119.7	ENST00000596705.5:ENST00000597444.6	lncRNA	lncRNA	lncRNA	lncRNA	1	64	2	3.14706	4.473345	5.79963	0.00382411	1.39468e-4	0.0562562	0.0107072
chr20	41578838	41578938	7344149	0	-	0.48	(0.476,0.515]	chr20	748566	143	INTRON	INTRON	CHD6	ENSG00000124177.16	ENST00000373233.8:ENST00000373222.3:ENST00000482596.1:ENST00000440647.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	62	2	3.44784	4.473255	5.49867	0.00113238	4.28561e-4	0.0308465	0.0189958
chr5	149495760	149495859	2750505	0	-	0.262626	[0,0.28]	chr5	258992	29	UTR3	UTR3:EXON_MRNA	CSNK1A1:ENSG00000230551	ENSG00000113712.19:ENSG00000230551.4	ENST00000261798.10:ENST00000377843.8:ENST00000657001.1:ENST00000499521.2:ENST00000515768.6	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron	1	86	2	2.81922	4.47325	6.12728	0.0197411	6.40034e-5	0.109608	0.00661396
chr4	165332348	165332446	2079677	0	+	0.295918	(0.28,0.32]	chr4	205560	39	INTRON	INTRON	MSMO1	ENSG00000052802.13	ENST00000507013.5:ENST00000261507.11:ENST00000393766.6:ENST00000504317.1:ENST00000505270.1	protein_coding	protein_coding	protein_coding	protein_coding	3	123	2	3.2748	4.473185	5.67157	9.48957e-4	6.71944e-5	0.0281755	0.00678102
chr22	20725887	20725987	7558304	0	-	0.45	(0.44,0.476]	chr22	772994	40	INTRON	INTRON	PI4KA	ENSG00000241973.11	ENST00000255882.11:ENST00000477245.5:ENST00000466772.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	62	2	3.41176	4.473075	5.53439	0.00130987	4.05863e-4	0.0333932	0.0185763
chr5	154249974	154250074	2524374	0	+	0.37	(0.35,0.378]	chr5	241463	296	INTRON	INTRON	GALNT10	ENSG00000164574.16	ENST00000425427.6:ENST00000297107.11:ENST00000520647.5:ENST00000377661.2:ENST00000521781.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	31	2	4.1971	4.472849999999999	4.7486	0.0367539	0.00418965	0.138959	0.0591344
chr8	102339477	102339577	4012014	0	-	0.37	(0.35,0.378]	chr8	367197	97	INTRON	INTRON	UBR5	ENSG00000104517.13	ENST00000520539.6:ENST00000220959.8:ENST00000521922.5	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.1971	4.472849999999999	4.7486	0.0367539	0.00418965	0.138959	0.0591344
chr3	197954647	197954733	1598780	0	+	0.395349	(0.378,0.408]	chr3	165721	1	INTRON	INTRON	RPL35A	ENSG00000182899.17	ENST00000647248.2:ENST00000448864.6:ENST00000642387.1:ENST00000429437.5:ENST00000439255.1:ENST00000474640.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	105	2	2.42827	4.472785	6.5173	0.00336942	4.93978e-6	0.0532965	0.00163836
chrX	139907732	139907832	7905652	0	-	0.37	(0.35,0.378]	chrX	804457	756	INTRON	INTRON	ATP11C	ENSG00000101974.15	ENST00000370557.5:ENST00000682941.1:ENST00000485626.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	66	2	3.21677	4.47271	5.72865	0.00313804	3.18898e-4	0.0514466	0.016499
chr19	49685469	49685554	7090519	0	+	0.305882	(0.28,0.32]	chr19	710200	4	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	PRMT1	ENSG00000126457.22	ENST00000532489.5:ENST00000610806.4:ENST00000391851.8:ENST00000454376.7:ENST00000530070.1:ENST00000530361.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	78	2	3.00395	4.4726	5.94125	0.0101329	6.50094e-5	0.0850389	0.00668837
chr1	21136199	21136299	393223	0	-	0.55	(0.515,0.57]	chr1	46836	232	INTRON	INTRON	EIF4G3	ENSG00000075151.24	ENST00000374935.7:ENST00000602326.6:ENST00000685872.1:ENST00000686579.1:ENST00000688741.1:ENST00000400422.6:ENST00000634879.2:ENST00000693470.1:ENST00000685814.1:ENST00000356916.7:ENST00000682284.1:ENST00000438975.5:ENST00000411888.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	60	2	3.58064	4.472519999999999	5.3644	6.54693e-4	1.52226e-4	0.0233335	0.0106137
chr10	73010403	73010468	4646968	0	-	0.353846	(0.35,0.378]	chr10	427476	1	INTRON	INTRON	P4HA1	ENSG00000122884.13	ENST00000394890.7:ENST00000307116.6:ENST00000373008.6:ENST00000440381.5:ENST00000263556.3:ENST00000464310.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	87	2	3.18004	4.47227	5.7645	3.8703e-4	2.7432e-4	0.0177751	0.0151711
chr18	12952896	12952995	6876206	0	+	0.50505	(0.476,0.515]	chr18	681277	6	INTRON	INTRON	SEH1L	ENSG00000085415.16	ENST00000592170.5:ENST00000262124.15:ENST00000399892.7:ENST00000585730.5:ENST00000589446.5:ENST00000587761.1:ENST00000588251.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	32	2	3.97201	4.47227	4.97253	0.030904	0.00311573	0.143385	0.0498063
chr16	15620831	15620931	6451477	0	-	0.34	(0.32,0.35]	chr16	621834	3	SS3_PROX	SS3_PROX:INTRON	MARF1	ENSG00000166783.22	ENST00000396368.8:ENST00000540441.6:ENST00000548025.5:ENST00000551742.5:ENST00000552553.5:ENST00000546864.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	33	2	3.94529	4.4722550000000005	4.99922	0.0693433	0.00223907	0.184298	0.0435144
chr2	36872814	36872914	1093656	0	-	0.34	(0.32,0.35]	chr2	117167	27	INTRON	INTRON	STRN	ENSG00000115808.12	ENST00000263918.9:ENST00000379213.3:ENST00000495595.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	33	2	3.94529	4.4722550000000005	4.99922	0.0693433	0.00223907	0.184298	0.0435144
chr7	10639542	10639642	3483175	0	-	0.34	(0.32,0.35]	chr7	325772	776	INTRON	INTRON	MGC4859	ENSG00000283117.1	ENST00000634803.1	lncRNA	lncRNA	lncRNA	lncRNA	0	33	2	3.94529	4.4722550000000005	4.99922	0.0693433	0.00223907	0.184298	0.0435144
chr1	9711687	9711786	18481	0	+	0.484848	(0.476,0.515]	chr1	1706	7	INTRON	INTRON	PIK3CD	ENSG00000171608.17	ENST00000377346.9:ENST00000628140.2:ENST00000361110.6	protein_coding	protein_coding	protein_coding	protein_coding	0	30	2	4.24501	4.4720949999999995	4.69918	0.0247713	0.00400966	0.12011	0.057767
chr12	9756919	9757017	5265220	0	-	0.510204	(0.476,0.515]	chr12	501958	1	INTRON	INTRON	CD69	ENSG00000110848.8	ENST00000228434.7:ENST00000536709.1:ENST00000416624.6:ENST00000543147.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	30	2	4.24501	4.4720949999999995	4.69918	0.0247713	0.00400966	0.12011	0.057767
chr5	131784026	131784125	2720615	0	-	0.494949	(0.476,0.515]	chr5	255730	390	INTRON	INTRON	FNIP1	ENSG00000217128.13	ENST00000510461.6:ENST00000307954.12:ENST00000307968.11:ENST00000511848.1	protein_coding	protein_coding	protein_coding	protein_coding	0	30	2	4.24501	4.4720949999999995	4.69918	0.0247713	0.00400966	0.12011	0.057767
chr7	157380675	157380773	3455752	0	+	0.489796	(0.476,0.515]	chr7	323103	27	EXON_MRNA	EXON_MRNA:INTRON	DNAJB6	ENSG00000105993.15	ENST00000441561.5:ENST00000429029.6:ENST00000262177.9:ENST00000417758.5:ENST00000459889.5:ENST00000443280.5:ENST00000441291.5:ENST00000412557.5:ENST00000634080.1:ENST00000468928.5:ENST00000465908.5:ENST00000487480.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	30	2	4.24501	4.4720949999999995	4.69918	0.0247713	0.00400966	0.12011	0.057767
chr8	41984754	41984854	3940632	0	-	0.51	(0.476,0.515]	chr8	361217	24	INTRON	INTRON	KAT6A	ENSG00000083168.11	ENST00000406337.6:ENST00000265713.8:ENST00000396930.4:ENST00000648335.1:ENST00000649827.1:ENST00000485568.5:ENST00000647809.1:ENST00000648030.1:ENST00000650356.1:ENST00000470574.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	30	2	4.24501	4.4720949999999995	4.69918	0.0247713	0.00400966	0.12011	0.057767
chr11	65294951	65295039	4805066	0	+	0.352273	(0.35,0.378]	chr11	446413	3	SS5_PROX	SS5_PROX:INTRON	POLA2	ENSG00000014138.9	ENST00000527850.5:ENST00000265465.8:ENST00000527618.5:ENST00000525924.1:ENST00000534785.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	31	2	4.29961	4.47209	4.64457	0.0158483	0.012652	0.109464	0.0926667
chr11	68082390	68082490	4972204	0	-	0.36	(0.35,0.378]	chr11	469424	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	CHKA	ENSG00000110721.12	ENST00000265689.9:ENST00000356135.9:ENST00000528235.5:ENST00000531341.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	31	2	4.29961	4.47209	4.64457	0.0158483	0.012652	0.109464	0.0926667
chr15	90618293	90618380	6100624	0	+	0.367816	(0.35,0.378]	chr15	580799	2	SS5_PROX	SS5_PROX:INTRON	CRTC3	ENSG00000140577.17	ENST00000268184.11:ENST00000420329.6:ENST00000691029.1:ENST00000686240.1:ENST00000692149.1:ENST00000687075.1:ENST00000558005.1:ENST00000561255.5:ENST00000560047.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	31	2	4.29961	4.47209	4.64457	0.0158483	0.012652	0.109464	0.0926667
chr19	9144874	9144973	7011283	0	+	0.373737	(0.35,0.378]	chr19	696234	39	INTRON	INTRON	ZNF317	ENSG00000130803.15	ENST00000247956.11:ENST00000360385.7:ENST00000591278.5:ENST00000419608.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	31	2	4.29961	4.47209	4.64457	0.0158483	0.012652	0.109464	0.0926667
chr2	224582653	224582752	1336319	0	-	0.353535	(0.35,0.378]	chr2	140179	130	INTRON	INTRON	CUL3	ENSG00000036257.14	ENST00000344951.8:ENST00000264414.9	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.29961	4.47209	4.64457	0.0158483	0.012652	0.109464	0.0926667
chr3	25735618	25735714	1642350	0	-	0.364583	(0.35,0.378]	chr3	168636	18	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	NGLY1	ENSG00000151092.18	ENST00000280700.10:ENST00000428257.5:ENST00000675217.1:ENST00000676225.1:ENST00000493324.5:ENST00000396649.7:ENST00000675178.1:ENST00000675680.1:ENST00000308710.9:ENST00000280699.13:ENST00000496726.5:ENST00000674841.1:ENST00000675234.1:ENST00000463611.2:ENST00000417874.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	31	2	4.29961	4.47209	4.64457	0.0158483	0.012652	0.109464	0.0926667
chr17	82741893	82741992	6694094	0	+	0.444444	(0.44,0.476]	chr17	654786	1	INTRON	INTRON	FN3K	ENSG00000167363.14	ENST00000300784.8:ENST00000570734.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	85	2	2.73781	4.47197	6.20613	0.00276493	1.69413e-5	0.04867	0.00330681
chr1	50713184	50713284	449780	0	-	0.3	(0.28,0.32]	chr1	54237	69	INTRON	INTRON	FAF1	ENSG00000185104.21	ENST00000396153.7:ENST00000487898.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	32	2	4.33765	4.471875	4.6061	0.039714	0.0102724	0.143072	0.089002
chr1	193140972	193141072	284802	0	+	0.29	(0.28,0.32]	chr1	32778	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	CDC73	ENSG00000134371.14	ENST00000649895.1:ENST00000643006.1:ENST00000367435.5:ENST00000650197.1:ENST00000643784.1:ENST00000648071.1:ENST00000635846.1:ENST00000649606.1:ENST00000647662.1:ENST00000649706.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	32	2	4.33765	4.471875	4.6061	0.039714	0.0102724	0.143072	0.089002
chr11	108227326	108227425	4857128	0	+	0.292929	(0.28,0.32]	chr11	453073	44	UTR5	UTR5:EXON_MRNA:SS3_PROX:INTRON	ATM	ENSG00000149311.20	ENST00000683488.1:ENST00000675843.1:ENST00000683174.1:ENST00000527805.6:ENST00000675595.1:ENST00000683468.1:ENST00000532931.5:ENST00000530958.5:ENST00000452508.6:ENST00000683914.1:ENST00000683150.1:ENST00000640388.1:ENST00000639953.1:ENST00000639240.1:ENST00000278616.9:ENST00000526567.5:ENST00000682430.1:ENST00000601453.2:ENST00000684037.1:ENST00000682516.1:ENST00000684061.1:ENST00000684179.1:ENST00000682956.1:ENST00000684029.1:ENST00000682147.1:ENST00000682465.1:ENST00000638443.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	32	2	4.33765	4.471875	4.6061	0.039714	0.0102724	0.143072	0.089002
chr12	69537315	69537415	5164927	0	+	0.31	(0.28,0.32]	chr12	489157	49	INTRON	INTRON	FRS2	ENSG00000166225.9	ENST00000547219.5:ENST00000550316.5:ENST00000547414.5:ENST00000548154.5:ENST00000549921.6:ENST00000550389.5:ENST00000550937.5:ENST00000549092.5:ENST00000550169.5	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.33765	4.471875	4.6061	0.039714	0.0102724	0.143072	0.089002
chr17	49345908	49346008	6792388	0	-	0.29	(0.28,0.32]	chr17	670175	230	INTRON	INTRON	ZNF652	ENSG00000198740.9	ENST00000430262.3:ENST00000508237.5:ENST00000362063.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	32	2	4.33765	4.471875	4.6061	0.039714	0.0102724	0.143072	0.089002
chr2	32166801	32166901	729786	0	+	0.32	(0.28,0.32]	chr2	84142	5	INTRON	INTRON	SLC30A6	ENSG00000152683.14	ENST00000357055.7:ENST00000435660.5:ENST00000282587.9:ENST00000449777.5:ENST00000454324.5:ENST00000379343.6:ENST00000440718.5:ENST00000406369.2:ENST00000457724.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	32	2	4.33765	4.471875	4.6061	0.039714	0.0102724	0.143072	0.089002
chr2	39317574	39317673	1103086	0	-	0.313131	(0.28,0.32]	chr2	118445	18	INTRON	INTRON	MAP4K3	ENSG00000011566.15	ENST00000263881.8:ENST00000437545.5:ENST00000341681.9:ENST00000414968.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	32	2	4.33765	4.471875	4.6061	0.039714	0.0102724	0.143072	0.089002
chr3	182846998	182847096	1578419	0	+	0.316327	(0.28,0.32]	chr3	162745	11	INTRON	INTRON	ATP11B	ENSG00000058063.16	ENST00000323116.10:ENST00000482794.1:ENST00000498086.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	32	2	4.33765	4.471875	4.6061	0.039714	0.0102724	0.143072	0.089002
chr4	123131078	123131178	2037725	0	+	0.32	(0.28,0.32]	chr4	202384	289	INTRON	INTRON	SPATA5	ENSG00000145375.9	ENST00000675612.1:ENST00000274008.5	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.33765	4.471875	4.6061	0.039714	0.0102724	0.143072	0.089002
chr5	131317841	131317940	2485175	0	+	0.30303	(0.28,0.32]	chr5	237120	13	INTRON	INTRON	CDC42SE2	ENSG00000158985.14	ENST00000502840.5:ENST00000511432.5:ENST00000506419.5:ENST00000395246.5:ENST00000505065.2:ENST00000504701.5:ENST00000503291.5:ENST00000360515.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	32	2	4.33765	4.471875	4.6061	0.039714	0.0102724	0.143072	0.089002
chr7	65907621	65907721	3323221	0	+	0.31	(0.28,0.32]	chr7	309012	337	INTRON	INTRON	VKORC1L1	ENSG00000196715.7	ENST00000360768.5:ENST00000648187.1:ENST00000648179.1:ENST00000434382.2	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.33765	4.471875	4.6061	0.039714	0.0102724	0.143072	0.089002
chr9	125186328	125186428	4352391	0	-	0.3	(0.28,0.32]	chr9	399581	140	INTRON	INTRON	PPP6C	ENSG00000119414.12	ENST00000373547.9:ENST00000415905.5:ENST00000451402.5:ENST00000456642.1	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.33765	4.471875	4.6061	0.039714	0.0102724	0.143072	0.089002
chr1	88706612	88706712	155992	0	+	0.29	(0.28,0.32]	chr1	17045	216	INTRON	INTRON	PKN2	ENSG00000065243.20	ENST00000316005.11:ENST00000370521.8:ENST00000370513.9	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.4334	4.471605	4.50981	0.0275554	0.0163355	0.123904	0.109464
chr1	93311114	93311213	509058	0	-	0.30303	(0.28,0.32]	chr1	59970	11	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	CCDC18-AS1	ENSG00000223745.8	ENST00000413606.5:ENST00000457025.5:ENST00000451302.6:ENST00000668257.1:ENST00000446528.6:ENST00000415150.5:ENST00000455474.5:ENST00000447577.5:ENST00000414430.5:ENST00000429859.5:ENST00000424517.3:ENST00000427669.5:ENST00000661111.1:ENST00000450843.5:ENST00000440778.5:ENST00000659026.1:ENST00000669506.1:ENST00000657560.1:ENST00000421202.6	lncRNA	lncRNA	lncRNA	lncRNA	0	32	2	4.4334	4.471605	4.50981	0.0275554	0.0163355	0.123904	0.109464
chr1	176143523	176143622	591070	0	-	0.292929	(0.28,0.32]	chr1	70944	66	INTRON	INTRON	COP1	ENSG00000143207.21	ENST00000367669.8:ENST00000367667.5:ENST00000367666.5:ENST00000649803.1:ENST00000308769.12:ENST00000498306.5:ENST00000491600.5:ENST00000474194.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	32	2	4.4334	4.471605	4.50981	0.0275554	0.0163355	0.123904	0.109464
chr10	42636825	42636919	4604493	0	-	0.308511	(0.28,0.32]	chr10	424156	1	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	ZNF33B	ENSG00000196693.15	ENST00000486187.5:ENST00000359467.8:ENST00000476796.2:ENST00000493285.2:ENST00000486614.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	32	2	4.4334	4.471605	4.50981	0.0275554	0.0163355	0.123904	0.109464
chr14	90287625	90287716	5948327	0	-	0.318681	(0.28,0.32]	chr14	564811	8	INTRON	INTRON	NRDE2	ENSG00000119720.18	ENST00000354366.8:ENST00000556189.5:ENST00000553409.5:ENST00000555903.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	32	2	4.4334	4.471605	4.50981	0.0275554	0.0163355	0.123904	0.109464
chr2	121601673	121601772	1221911	0	-	0.30303	(0.28,0.32]	chr2	130051	710	INTRON	INTRON	CLASP1	ENSG00000074054.20	ENST00000263710.8:ENST00000397587.7:ENST00000541377.5:ENST00000409078.8:ENST00000455322.6	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.4334	4.471605	4.50981	0.0275554	0.0163355	0.123904	0.109464
chr1	179101725	179101825	591782	0	-	0.49	(0.476,0.515]	chr1	71006	25	UTR3	UTR3:EXON_MRNA	ABL2	ENSG00000143322.21	ENST00000502732.6	protein_coding	protein_coding	protein_coding	protein_coding	0	30	2	4.32915	4.471585	4.61402	0.0124637	0.00947755	0.0973643	0.0817766
chr12	102341022	102341122	5207083	0	+	0.49	(0.476,0.515]	chr12	492881	1436	EXON_LNCRNA	EXON_LNCRNA:INTRON	HELLPAR:LINC02456	ENSG00000281344.1:ENSG00000283052.1	ENST00000626826.1:ENST00000635615.1	lncRNA	lncRNA	lncRNA	lncRNA	0	30	2	4.32915	4.471585	4.61402	0.0124637	0.00947755	0.0973643	0.0817766
chr17	61927426	61927489	6809608	0	-	0.492063	(0.476,0.515]	chr17	672792	1	SS5_PROX	SS5_PROX:INTRON	INTS2	ENSG00000108506.13	ENST00000251334.7:ENST00000444766.7:ENST00000646745.1:ENST00000647009.1:ENST00000646954.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	30	2	4.32915	4.471585	4.61402	0.0124637	0.00947755	0.0973643	0.0817766
chr7	67124309	67124408	3327927	0	+	0.484848	(0.476,0.515]	chr7	309460	63	INTRON	INTRON	TYW1	ENSG00000198874.14	ENST00000359626.10:ENST00000361660.8:ENST00000495971.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	30	2	4.32915	4.471585	4.61402	0.0124637	0.00947755	0.0973643	0.0817766
chr9	135471082	135471181	4371077	0	-	0.494949	(0.476,0.515]	chr9	402349	20	INTRON	INTRON	PPP1R26-AS1	ENSG00000225361.4	ENST00000603624.1:ENST00000660718.1:ENST00000455039.3	lncRNA	lncRNA	lncRNA	lncRNA	0	30	2	4.32915	4.471585	4.61402	0.0124637	0.00947755	0.0973643	0.0817766
chr20	62903023	62903121	7362211	0	-	0.326531	(0.32,0.35]	chr20	751176	57	INTRON	INTRON	DIDO1	ENSG00000101191.17	ENST00000266070.8:ENST00000395343.6:ENST00000395340.5	protein_coding	protein_coding	protein_coding	protein_coding	2	91	2	2.85974	4.471315	6.08289	0.00186579	1.06767e-4	0.0399675	0.00924854
chr3	37019714	37019809	1395419	0	+	0.463158	(0.44,0.476]	chr3	146233	18	INTRON	INTRON	MLH1	ENSG00000076242.16	ENST00000536378.5:ENST00000673899.1:ENST00000674111.1:ENST00000673972.1:ENST00000673713.1:ENST00000231790.8:ENST00000673715.1:ENST00000432299.6:ENST00000673897.1:ENST00000442249.6:ENST00000673947.1:ENST00000456676.6:ENST00000673673.1:ENST00000674019.1:ENST00000458205.6:ENST00000413212.2:ENST00000447829.6:ENST00000673990.1:ENST00000455445.6:ENST00000435176.5:ENST00000539477.6:ENST00000441265.6:ENST00000674107.1:ENST00000458009.5:ENST00000673889.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	66	2	3.26669	4.47114	5.67559	0.00305435	6.34721e-5	0.0493883	0.00658818
chr1	171587971	171588064	254276	0	+	0.397849	(0.378,0.408]	chr1	30268	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PRRC2C	ENSG00000117523.18	ENST00000647382.2:ENST00000367742.7:ENST00000338920.8:ENST00000426496.6:ENST00000495585.1:ENST00000644916.1:ENST00000498596.5:ENST00000492811.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	63	2	3.5186	4.47109	5.42358	8.45009e-4	8.39231e-4	0.0266487	0.0263813
chr1	77680990	77681090	493448	0	-	0.25	[0,0.28]	chr1	58319	33	INTRON	INTRON	ZZZ3	ENSG00000036549.13	ENST00000370801.8:ENST00000370798.5:ENST00000433749.5:ENST00000414381.5:ENST00000463166.5:ENST00000469944.1:ENST00000458763.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	85	2	3.33621	4.47106	5.60591	0.00427056	6.01442e-4	0.0573912	0.0223465
chr22	35258980	35259078	7507988	0	+	0.346939	(0.32,0.35]	chr22	766268	5	INTRON	INTRON	HMGXB4	ENSG00000100281.14	ENST00000420166.5:ENST00000418170.5:ENST00000216106.6:ENST00000455359.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	33	2	4.04364	4.4706600000000005	4.89768	0.034181	0.00793135	0.146815	0.076155
chr5	139286890	139286990	2499306	0	+	0.35	(0.32,0.35]	chr5	238892	21	INTRON	INTRON	MATR3	ENSG00000280987.4	ENST00000509990.5:ENST00000506147.5:ENST00000512107.5:ENST00000361059.7:ENST00000394800.6:ENST00000502929.5:ENST00000504203.5:ENST00000514694.5:ENST00000509644.5:ENST00000505016.2:ENST00000502394.1	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.04364	4.4706600000000005	4.89768	0.034181	0.00793135	0.146815	0.076155
chrX	2394870	2394970	7744553	0	-	0.45	(0.44,0.476]	chrX	792953	20	INTRON	INTRON	DHRSX	ENSG00000169084.15	ENST00000334651.11:ENST00000412516.7:ENST00000444280.6:ENST00000441131.7:ENST00000478825.7:ENST00000430536.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	32	2	3.97626	4.470585	4.96491	0.0300538	0.0034249	0.142135	0.0517761
chr17	31945435	31945534	6595761	0	+	0.353535	(0.35,0.378]	chr17	641548	46	INTRON	INTRON	SUZ12	ENSG00000178691.11	ENST00000322652.10:ENST00000580398.1	protein_coding	protein_coding	protein_coding	protein_coding	1	65	2	3.58286	4.47057	5.35828	0.00135282	6.77448e-4	0.0336321	0.0236287
chr5	1808954	1809053	2314613	0	+	0.373737	(0.35,0.378]	chr5	224094	62	INTRON	INTRON	NDUFS6	ENSG00000145494.12	ENST00000274137.10:ENST00000469176.1	protein_coding	protein_coding	protein_coding	protein_coding	1	65	2	3.58286	4.47057	5.35828	0.00135282	6.77448e-4	0.0336321	0.0236287
chr1	43731348	43731447	86323	0	+	0.474747	(0.44,0.476]	chr1	11645	215	INTRON	INTRON	ST3GAL3	ENSG00000126091.21	ENST00000646096.1:ENST00000532911.6:ENST00000643597.1:ENST00000643886.1:ENST00000372372.7:ENST00000545417.5:ENST00000330208.6:ENST00000335430.10:ENST00000361400.9:ENST00000347631.8:ENST00000642331.1:ENST00000647237.1:ENST00000643252.1:ENST00000372374.7:ENST00000361392.9:ENST00000646109.1:ENST00000533997.6:ENST00000353126.8:ENST00000645640.1:ENST00000642934.1:ENST00000643283.1:ENST00000351035.8:ENST00000642949.1:ENST00000489897.6:ENST00000646971.1:ENST00000645142.1:ENST00000645705.1:ENST00000530154.5:ENST00000646027.1:ENST00000646069.1:ENST00000642504.1:ENST00000647148.1:ENST00000262915.8:ENST00000479383.6:ENST00000647482.1:ENST00000646776.1:ENST00000645394.1:ENST00000647128.1:ENST00000484868.2:ENST00000461066.6:ENST00000361746.9:ENST00000645034.1:ENST00000645165.1:ENST00000647134.1:ENST00000644195.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	30	2	4.23755	4.470549999999999	4.70355	0.0263357	0.00383786	0.122221	0.0562562
chr11	13693361	13693461	4742553	0	+	0.45	(0.44,0.476]	chr11	439155	234	INTRON	INTRON	FAR1	ENSG00000197601.13	ENST00000354817.8:ENST00000532701.1	protein_coding	protein_coding	protein_coding	protein_coding	0	30	2	4.23755	4.470549999999999	4.70355	0.0263357	0.00383786	0.122221	0.0562562
chr11	63750606	63750698	4800611	0	+	0.456522	(0.44,0.476]	chr11	444963	3	SS5_PROX	SS5_PROX:INTRON	RTN3	ENSG00000133318.14	ENST00000341307.6:ENST00000356000.7:ENST00000542238.5:ENST00000339997.8:ENST00000540798.5:ENST00000537981.5:ENST00000377819.10:ENST00000536011.5:ENST00000354497.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	30	2	4.23755	4.470549999999999	4.70355	0.0263357	0.00383786	0.122221	0.0562562
chr11	68480590	68480689	4817531	0	+	0.363636	(0.35,0.378]	chr11	448907	194	INTRON	INTRON	PPP6R3	ENSG00000110075.15	ENST00000530427.5:ENST00000528635.5:ENST00000529907.5:ENST00000533127.5:ENST00000534534.5:ENST00000529344.5:ENST00000524845.5:ENST00000393800.7:ENST00000265637.8:ENST00000524904.5:ENST00000393801.7:ENST00000265636.9:ENST00000529710.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	133	2	2.62446	4.470549999999999	6.31664	2.95089e-4	2.12364e-5	0.0153633	0.00377197
chr3	49396935	49397035	1693912	0	-	0.47	(0.44,0.476]	chr3	173707	210	INTRON	INTRON	RHOA	ENSG00000067560.14	ENST00000678200.1:ENST00000422781.6:ENST00000676712.2:ENST00000678921.2:ENST00000445425.6:ENST00000454011.7:ENST00000418115.6:ENST00000679208.1:ENST00000677684.1:ENST00000431929.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	30	2	4.23755	4.470549999999999	4.70355	0.0263357	0.00383786	0.122221	0.0562562
chr3	178762131	178762231	1875122	0	-	0.47	(0.44,0.476]	chr3	187500	46	INTRON	INTRON	KCNMB2-AS1	ENSG00000237978.6	ENST00000437488.5:ENST00000668466.1:ENST00000432385.5:ENST00000451742.5:ENST00000425330.1:ENST00000421498.1	lncRNA	lncRNA	lncRNA	lncRNA	0	30	2	4.23755	4.470549999999999	4.70355	0.0263357	0.00383786	0.122221	0.0562562
chrX	24782545	24782645	7632603	0	+	0.43	(0.408,0.44]	chrX	781731	68	INTRON	INTRON	POLA1	ENSG00000101868.13	ENST00000672178.1:ENST00000379068.8:ENST00000379059.7:ENST00000611764.2:ENST00000480125.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	62	2	3.41323	4.470405	5.52758	0.00129989	4.54953e-4	0.0333764	0.0196892
chr22	19840445	19840545	7555484	0	-	0.57	(0.515,0.57]	chr22	772443	187	INTRON	INTRON	GNB1L	ENSG00000185838.14	ENST00000329517.11:ENST00000403325.5:ENST00000405009.5:ENST00000460402.5:ENST00000481086.1:ENST00000453108.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	31	2	3.89856	4.4704049999999995	5.04225	0.0280943	0.00131841	0.137011	0.0331539
chr1	201853397	201853497	292003	0	+	0.48	(0.476,0.515]	chr1	33555	3	SS5_PROX	SS5_PROX:INTRON	IPO9	ENSG00000198700.10	ENST00000361565.9	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.10113	4.470375000000001	4.83962	0.0226984	0.00480934	0.124921	0.0602209
chr14	101996607	101996707	5820562	0	+	0.51	(0.476,0.515]	chr14	552048	4	SS3_PROX	SS3_PROX:INTRON	DYNC1H1	ENSG00000197102.14	ENST00000360184.10:ENST00000684561.1:ENST00000680313.1:ENST00000679720.1:ENST00000680715.1:ENST00000681283.1:ENST00000681822.1:ENST00000679910.1:ENST00000681574.1:ENST00000645039.2:ENST00000645149.2:ENST00000680200.1:ENST00000680120.1:ENST00000644881.2:ENST00000681066.1:ENST00000680423.1:ENST00000681536.1:ENST00000679486.1:ENST00000681010.1:ENST00000679629.1:ENST00000681123.1:ENST00000680874.1:ENST00000680137.1:ENST00000643508.2:ENST00000680808.1:ENST00000681311.1:ENST00000681859.1:ENST00000643684.1:ENST00000643958.2:ENST00000680001.1:ENST00000681668.1:ENST00000645114.2:ENST00000681751.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	31	2	4.10113	4.470375000000001	4.83962	0.0226984	0.00480934	0.124921	0.0602209
chr16	87699443	87699543	6537986	0	-	0.5	(0.476,0.515]	chr16	633471	14	UTR3	UTR3:EXON_MRNA	KLHDC4	ENSG00000104731.14	ENST00000446344.3:ENST00000567298.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	31	2	4.10113	4.470375000000001	4.83962	0.0226984	0.00480934	0.124921	0.0602209
chr17	35010771	35010871	6757166	0	-	0.51	(0.476,0.515]	chr17	664084	49	UTR3	UTR3:EXON_MRNA	RFFL	ENSG00000092871.17	ENST00000315249.11:ENST00000394597.7:ENST00000584655.5	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.10113	4.470375000000001	4.83962	0.0226984	0.00480934	0.124921	0.0602209
chr6	35038624	35038723	2850777	0	+	0.515152	(0.476,0.515]	chr6	269284	202	INTRON	INTRON	ANKS1A	ENSG00000064999.15	ENST00000360359.5:ENST00000649117.1	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.10113	4.470375000000001	4.83962	0.0226984	0.00480934	0.124921	0.0602209
chr22	21813943	21814043	7560849	0	-	0.42	(0.408,0.44]	chr22	773388	57	INTRON	INTRON	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	4	113	2	2.63748	4.470165	6.30285	5.0683e-4	1.14977e-5	0.0202328	0.00268333
chr1	9665891	9665991	18014	0	+	0.45	(0.44,0.476]	chr1	1682	137	INTRON	INTRON	PIK3CD	ENSG00000171608.17	ENST00000377346.9:ENST00000628140.2	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.01038	4.4700299999999995	4.92968	0.0433743	0.00171443	0.148082	0.0381936
chr2	231792962	231793054	1032841	0	+	0.445652	(0.44,0.476]	chr2	110336	3	INTRON	INTRON	COPS7B	ENSG00000144524.18	ENST00000611614.4:ENST00000410024.5:ENST00000409295.5:ENST00000409091.5:ENST00000449784.5:ENST00000620578.4:ENST00000413197.5:ENST00000412591.5:ENST00000350033.8:ENST00000412922.6:ENST00000410017.5:ENST00000373608.7:ENST00000436564.5:ENST00000461350.5:ENST00000474042.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	31	2	4.01038	4.4700299999999995	4.92968	0.0433743	0.00171443	0.148082	0.0381936
chr7	75360198	75360294	3337662	0	+	0.458333	(0.44,0.476]	chr7	310719	4	INTRON	INTRON	STAG3L1	ENSG00000205583.14	ENST00000619870.4:ENST00000687422.1:ENST00000684904.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	31	2	4.01038	4.4700299999999995	4.92968	0.0433743	0.00171443	0.148082	0.0381936
chr1	19179320	19179420	386508	0	-	0.28	[0,0.28]	chr1	46062	1	SS3_PROX	SS3_PROX:INTRON	UBR4	ENSG00000127481.15	ENST00000375254.8	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.38387	4.470025	4.55618	0.0501911	0.0171034	0.156383	0.110899
chr1	43916944	43917029	88213	0	+	0.270588	[0,0.28]	chr1	11779	5	UTR3	UTR3:EXON_MRNA:INTRON	ST3GAL3	ENSG00000126091.21	ENST00000643597.1:ENST00000372372.7:ENST00000545417.5:ENST00000330208.6:ENST00000335430.10:ENST00000361400.9:ENST00000347631.8:ENST00000642331.1:ENST00000647237.1:ENST00000643252.1:ENST00000372374.7:ENST00000361392.9:ENST00000533997.6:ENST00000353126.8:ENST00000645640.1:ENST00000642934.1:ENST00000643283.1:ENST00000351035.8:ENST00000642949.1:ENST00000489897.6:ENST00000646971.1:ENST00000645142.1:ENST00000645705.1:ENST00000530154.5:ENST00000646027.1:ENST00000646069.1:ENST00000642504.1:ENST00000647148.1:ENST00000262915.8:ENST00000647482.1:ENST00000645394.1:ENST00000647128.1:ENST00000361746.9:ENST00000645034.1:ENST00000645165.1:ENST00000647134.1:ENST00000644195.1:ENST00000642194.1:ENST00000372368.7:ENST00000646686.1:ENST00000372366.6:ENST00000361812.9:ENST00000469715.6:ENST00000372369.5:ENST00000372367.5:ENST00000372365.5:ENST00000528371.5:ENST00000533212.5:ENST00000530581.5:ENST00000531816.1:ENST00000531993.6:ENST00000490541.6:ENST00000372362.6:ENST00000531451.5:ENST00000645117.1:ENST00000533933.6:ENST00000332628.11:ENST00000643813.1:ENST00000644922.1:ENST00000644287.1:ENST00000647503.1:ENST00000461375.2:ENST00000642780.1:ENST00000644645.1:ENST00000645644.1:ENST00000644016.1:ENST00000644378.1:ENST00000646032.1:ENST00000643989.1:ENST00000645012.1:ENST00000490502.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	33	2	4.38387	4.470025	4.55618	0.0501911	0.0171034	0.156383	0.110899
chr11	134200321	134200421	5054939	0	-	0.24	[0,0.28]	chr11	477187	52	INTRON	INTRON	NCAPD3	ENSG00000151503.14	ENST00000534548.7:ENST00000692494.1:ENST00000688672.1:ENST00000534532.7:ENST00000689387.1:ENST00000688263.1:ENST00000525964.7:ENST00000690149.1:ENST00000687480.1:ENST00000690743.1:ENST00000685324.1:ENST00000689205.1:ENST00000525432.2:ENST00000687155.1:ENST00000685119.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	33	2	4.38387	4.470025	4.55618	0.0501911	0.0171034	0.156383	0.110899
chr12	847729	847829	5057135	0	+	0.28	[0,0.28]	chr12	477445	172	INTRON	INTRON	WNK1	ENSG00000060237.19	ENST00000315939.11:ENST00000340908.9:ENST00000535572.5:ENST00000537687.5:ENST00000530271.6:ENST00000540360.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	33	2	4.38387	4.470025	4.55618	0.0501911	0.0171034	0.156383	0.110899
chr12	65223215	65223315	5157653	0	+	0.23	[0,0.28]	chr12	488254	42	INTRON	INTRON	LEMD3	ENSG00000174106.3	ENST00000308330.3	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.38387	4.470025	4.55618	0.0501911	0.0171034	0.156383	0.110899
chr17	30161386	30161485	6587841	0	+	0.262626	[0,0.28]	chr17	640581	44	INTRON	INTRON	NSRP1	ENSG00000126653.18	ENST00000540900.7:ENST00000612959.4:ENST00000247026.10:ENST00000577289.6:ENST00000584154.5:ENST00000394826.8:ENST00000475652.5:ENST00000584317.5:ENST00000585881.5:ENST00000467446.6:ENST00000580103.6:ENST00000581048.5:ENST00000588614.1:ENST00000589608.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	33	2	4.38387	4.470025	4.55618	0.0501911	0.0171034	0.156383	0.110899
chr3	158258261	158258361	1539765	0	+	0.26	[0,0.28]	chr3	160296	266	INTRON	INTRON	RSRC1	ENSG00000174891.14	ENST00000480820.5:ENST00000295930.7:ENST00000471994.5:ENST00000683733.1:ENST00000682221.1:ENST00000683831.1:ENST00000683516.1:ENST00000482822.3:ENST00000476899.6:ENST00000464171.5:ENST00000611884.5:ENST00000682164.1:ENST00000684604.1:ENST00000683899.1:ENST00000682500.1:ENST00000684683.1:ENST00000312179.10:ENST00000475278.6:ENST00000480119.5:ENST00000471911.5:ENST00000683137.1:ENST00000477788.5:ENST00000496268.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	33	2	4.38387	4.470025	4.55618	0.0501911	0.0171034	0.156383	0.110899
chr4	56417201	56417301	2151475	0	-	0.2	[0,0.28]	chr4	211799	90	INTRON	INTRON	PPAT	ENSG00000128059.8	ENST00000264220.6:ENST00000510643.5:ENST00000507724.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	33	2	4.38387	4.470025	4.55618	0.0501911	0.0171034	0.156383	0.110899
chr4	169610940	169611038	2297152	0	-	0.244898	[0,0.28]	chr4	222298	9	EXON_MRNA	EXON_MRNA:INTRON	NEK1	ENSG00000137601.18	ENST00000687054.1:ENST00000507142.6:ENST00000686697.1:ENST00000688934.1:ENST00000685111.1:ENST00000687528.1:ENST00000687643.1:ENST00000439128.6:ENST00000511633.5:ENST00000510533.5:ENST00000512193.5:ENST00000693604.1:ENST00000692450.1:ENST00000687219.1:ENST00000693085.1:ENST00000690631.1:ENST00000688487.1:ENST00000688653.1:ENST00000692868.1:ENST00000692218.1:ENST00000505119.2:ENST00000510108.1:ENST00000690685.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	33	2	4.38387	4.470025	4.55618	0.0501911	0.0171034	0.156383	0.110899
chr5	72895757	72895857	2387942	0	+	0.24	[0,0.28]	chr5	230469	4	EXON_MRNA	EXON_MRNA:INTRON	TNPO1	ENSG00000083312.19	ENST00000680533.1:ENST00000337273.10:ENST00000680025.1:ENST00000523768.5:ENST00000681711.1:ENST00000679378.1:ENST00000506351.6:ENST00000605210.1:ENST00000680111.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	33	2	4.38387	4.470025	4.55618	0.0501911	0.0171034	0.156383	0.110899
chr5	75398016	75398115	2642774	0	-	0.252525	[0,0.28]	chr5	251263	80	INTRON	INTRON	CERT1	ENSG00000113163.19	ENST00000646172.1:ENST00000644912.1:ENST00000644072.2:ENST00000644445.1:ENST00000357457.9:ENST00000261415.12:ENST00000642809.1:ENST00000647512.2:ENST00000380494.10:ENST00000642556.1:ENST00000646713.1:ENST00000644516.1:ENST00000645866.1:ENST00000645483.1:ENST00000642225.1:ENST00000405807.10:ENST00000642488.1:ENST00000643780.2:ENST00000646511.1:ENST00000643158.1:ENST00000644377.1:ENST00000508809.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	33	2	4.38387	4.470025	4.55618	0.0501911	0.0171034	0.156383	0.110899
chr5	141972513	141972608	2505335	0	+	0.263158	[0,0.28]	chr5	239769	13	INTRON	INTRON	RNF14	ENSG00000013561.18	ENST00000511961.5:ENST00000506822.5:ENST00000513019.5:ENST00000394519.5:ENST00000356143.5:ENST00000347642.7:ENST00000514620.5:ENST00000502341.5:ENST00000394520.7:ENST00000506938.5:ENST00000394514.6:ENST00000512565.5:ENST00000515613.5:ENST00000507163.5:ENST00000506004.5:ENST00000507291.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	33	2	4.38387	4.470025	4.55618	0.0501911	0.0171034	0.156383	0.110899
chrX	53594101	53594200	7820942	0	-	0.252525	[0,0.28]	chrX	798077	1	SS5_PROX	SS5_PROX:INTRON	HUWE1	ENSG00000086758.16	ENST00000262854.11:ENST00000342160.7:ENST00000612484.4:ENST00000218328.12	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	33	2	4.38387	4.470025	4.55618	0.0501911	0.0171034	0.156383	0.110899
chr12	57412470	57412570	5339073	0	-	0.47	(0.44,0.476]	chr12	510716	163	INTRON	INTRON	R3HDM2	ENSG00000179912.21	ENST00000402412.6:ENST00000347140.7:ENST00000634871.1:ENST00000448732.1	protein_coding	protein_coding	protein_coding	protein_coding	0	30	2	4.33346	4.469965	4.60647	0.0120349	0.0102339	0.0962115	0.0850389
chr12	104669372	104669472	5212812	0	+	0.45	(0.44,0.476]	chr12	493329	670	INTRON	INTRON	CHST11	ENSG00000171310.11	ENST00000303694.6:ENST00000549260.5:ENST00000549016.1	protein_coding	protein_coding	protein_coding	protein_coding	0	30	2	4.33346	4.469965	4.60647	0.0120349	0.0102339	0.0962115	0.0850389
chr16	18835432	18835509	6457126	0	-	0.454545	(0.44,0.476]	chr16	622647	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SMG1	ENSG00000157106.18	ENST00000446231.7:ENST00000565324.5	protein_coding	protein_coding	protein_coding	protein_coding	0	30	2	4.33346	4.469965	4.60647	0.0120349	0.0102339	0.0962115	0.0850389
chr21	42857770	42857869	7467689	0	-	0.454545	(0.44,0.476]	chr21	760955	16	INTRON	INTRON	WDR4	ENSG00000160193.12	ENST00000330317.6:ENST00000476326.5:ENST00000398208.3:ENST00000492742.5:ENST00000479429.5:ENST00000463902.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	30	2	4.33346	4.469965	4.60647	0.0120349	0.0102339	0.0962115	0.0850389
chr22	49819272	49819370	7603140	0	-	0.459184	(0.44,0.476]	chr22	778659	5	INTRON	INTRON	BRD1	ENSG00000100425.19	ENST00000404760.6:ENST00000404034.5:ENST00000216267.12:ENST00000438393.5:ENST00000457780.3:ENST00000459821.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	30	2	4.33346	4.469965	4.60647	0.0120349	0.0102339	0.0962115	0.0850389
chr3	197158452	197158551	1902102	0	-	0.444444	(0.44,0.476]	chr3	190630	23	INTRON	INTRON	DLG1	ENSG00000075711.21	ENST00000667157.1:ENST00000346964.6:ENST00000656428.1:ENST00000663148.1:ENST00000655488.1:ENST00000357674.9:ENST00000671185.1:ENST00000658701.1:ENST00000667104.1:ENST00000661336.1:ENST00000669565.1:ENST00000670455.1:ENST00000656087.1:ENST00000670366.1:ENST00000653583.1:ENST00000653795.1:ENST00000671246.1:ENST00000661453.1:ENST00000665728.1:ENST00000664564.1:ENST00000653331.1:ENST00000660432.1:ENST00000660898.1:ENST00000657381.1:ENST00000659221.1:ENST00000654737.1:ENST00000669332.1:ENST00000659716.1:ENST00000660553.1:ENST00000664991.1:ENST00000419354.5:ENST00000661440.1:ENST00000667971.1:ENST00000670935.1:ENST00000668578.1:ENST00000666007.1:ENST00000661229.1:ENST00000660237.1:ENST00000657098.1:ENST00000661013.1:ENST00000436682.6:ENST00000452595.5:ENST00000662727.1:ENST00000422288.6:ENST00000448528.6:ENST00000443183.5:ENST00000656944.1:ENST00000392382.6:ENST00000450955.5:ENST00000658155.1:ENST00000669714.1:ENST00000654733.1:ENST00000469073.2:ENST00000419227.5:ENST00000392381.7:ENST00000471733.5:ENST00000419553.6:ENST00000447466.1:ENST00000661808.1:ENST00000453607.5:ENST00000456699.6:ENST00000392380.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	30	2	4.33346	4.469965	4.60647	0.0120349	0.0102339	0.0962115	0.0850389
chr6	170544818	170544916	3267592	0	-	0.469388	(0.44,0.476]	chr6	303373	7	INTRON	INTRON	PSMB1	ENSG00000008018.9	ENST00000262193.7:ENST00000462957.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	30	2	4.33346	4.469965	4.60647	0.0120349	0.0102339	0.0962115	0.0850389
chr8	43116433	43116533	3746396	0	+	0.45	(0.44,0.476]	chr8	348612	62	INTRON	INTRON	POMK	ENSG00000185900.11	ENST00000676193.1:ENST00000331373.10:ENST00000674937.1:ENST00000614426.2:ENST00000674782.1:ENST00000676178.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	30	2	4.33346	4.469965	4.60647	0.0120349	0.0102339	0.0962115	0.0850389
chr1	41208413	41208513	430491	0	-	0.24	[0,0.28]	chr1	52255	218	INTRON	INTRON	SCMH1	ENSG00000010803.17	ENST00000695335.1:ENST00000372596.5:ENST00000372597.5:ENST00000337495.9:ENST00000488592.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	33	2	4.46726	4.4699	4.47254	0.0427997	0.020991	0.148082	0.122348
chr1	204558020	204558120	297849	0	+	0.27	[0,0.28]	chr1	34331	85	UTR3	UTR3:EXON_MRNA	MDM4	ENSG00000198625.14	ENST00000367183.7:ENST00000391947.6:ENST00000454264.6:ENST00000612738.4:ENST00000614459.4:ENST00000616250.4:ENST00000367182.8	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.46726	4.4699	4.47254	0.0427997	0.020991	0.148082	0.122348
chr12	778242	778341	5056434	0	+	0.171717	[0,0.28]	chr12	477423	236	INTRON	INTRON	WNK1	ENSG00000060237.19	ENST00000315939.11:ENST00000340908.9:ENST00000535572.5:ENST00000537687.5:ENST00000530271.6:ENST00000447667.2	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.46726	4.4699	4.47254	0.0427997	0.020991	0.148082	0.122348
chr8	92843434	92843534	3990540	0	-	0.23	[0,0.28]	chr8	365358	570	INTRON	INTRON	FLJ46284	ENSG00000248858.7	ENST00000504861.2	lncRNA	lncRNA	lncRNA	lncRNA	0	33	2	4.46726	4.4699	4.47254	0.0427997	0.020991	0.148082	0.122348
chr9	63988171	63988271	4262699	0	-	0.24	[0,0.28]	chr9	392254	15	INTRON	INTRON	ENSG00000204790	ENSG00000204790.9	ENST00000485382.3	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	0	33	2	4.46726	4.4699	4.47254	0.0427997	0.020991	0.148082	0.122348
chr19	2758469	2758568	7116499	0	-	0.40404	(0.378,0.408]	chr19	715461	8	EXON_MRNA	EXON_MRNA:INTRON	SGTA	ENSG00000104969.11	ENST00000221566.7:ENST00000678109.1:ENST00000676984.1:ENST00000677513.1:ENST00000676943.1:ENST00000679132.1:ENST00000677731.1:ENST00000679138.1:ENST00000677562.1:ENST00000678595.1:ENST00000677754.1:ENST00000676611.1:ENST00000677149.1:ENST00000591984.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	63	2	3.56208	4.469735	5.37739	0.0010014	6.94246e-4	0.0288906	0.0240761
chr6	31407369	31407468	2842663	0	+	0.454545	(0.44,0.476]	chr6	267458	33	INTRON	INTRON	MICA	ENSG00000204520.14	ENST00000616296.4:ENST00000674069.1:ENST00000673996.1:ENST00000673647.1:ENST00000449934.7:ENST00000421350.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	62	2	3.63638	4.46964	5.3029	0.00102616	4.74104e-4	0.029231300000000002	0.0196816
chr7	152256115	152256215	3679479	0	-	0.39	(0.378,0.408]	chr7	341597	30	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682916.1:ENST00000682280.1:ENST00000680039.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	63	2	3.4275	4.46962	5.51174	0.00126053	5.93655e-4	0.03295	0.0225024
chr1	229333431	229333531	652518	0	-	0.29	(0.28,0.32]	chr1	77248	55	INTRON	INTRON	CCSAP	ENSG00000154429.11	ENST00000366687.5:ENST00000284617.7:ENST00000366686.1:ENST00000483092.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	95	2	3.00291	4.4694199999999995	5.93593	0.00110829	3.47635e-4	0.0305035	0.017378
chr10	86477562	86477662	4658920	0	-	0.47	(0.44,0.476]	chr10	429282	32	INTRON	INTRON	WAPL	ENSG00000062650.20	ENST00000298767.10	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.1054	4.46871	4.83202	0.0220205	0.00525002	0.123836	0.0633615
chr15	79894309	79894408	6240875	0	-	0.464646	(0.44,0.476]	chr15	595758	46	INTRON	INTRON	MTHFS:ST20-MTHFS	ENSG00000136371.11:ENSG00000259332.3	ENST00000258874.4:ENST00000559722.2:ENST00000615374.5:ENST00000479961.1:ENST00000494999.1:ENST00000560919.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	31	2	4.1054	4.46871	4.83202	0.0220205	0.00525002	0.123836	0.0633615
chr17	64835272	64835371	6817825	0	-	0.464646	(0.44,0.476]	chr17	674091	57	INTRON	INTRON	PLEKHM1P1	ENSG00000214176.10	ENST00000578036.5:ENST00000582986.5:ENST00000692349.1:ENST00000580919.5:ENST00000691202.1:ENST00000397718.8:ENST00000584585.2:ENST00000687956.1:ENST00000688185.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	31	2	4.1054	4.46871	4.83202	0.0220205	0.00525002	0.123836	0.0633615
chr19	17148074	17148173	7028673	0	+	0.454545	(0.44,0.476]	chr19	699598	22	INTRON	INTRON	MYO9B	ENSG00000099331.14	ENST00000682292.1:ENST00000595618.5:ENST00000594824.5:ENST00000397274.6:ENST00000595641.5	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.1054	4.46871	4.83202	0.0220205	0.00525002	0.123836	0.0633615
chr22	20651778	20651878	7558054	0	-	0.47	(0.44,0.476]	chr22	772935	122	INTRON	INTRON	SMPD4P1	ENSG00000223553.6	ENST00000443839.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	31	2	4.1054	4.46871	4.83202	0.0220205	0.00525002	0.123836	0.0633615
chr22	47783259	47783358	7540889	0	+	0.474747	(0.44,0.476]	chr22	770756	44	INTRON	INTRON	ENSG00000224271	ENSG00000224271.7	ENST00000664761.1:ENST00000650683.1:ENST00000651536.1:ENST00000652656.1:ENST00000652072.1:ENST00000651445.1:ENST00000423737.5:ENST00000650660.1:ENST00000651056.1:ENST00000652611.1:ENST00000652399.1:ENST00000652123.1:ENST00000652505.1:ENST00000652030.2:ENST00000651403.1:ENST00000652228.1:ENST00000651124.1:ENST00000650972.1:ENST00000651637.1:ENST00000651003.1:ENST00000651948.2:ENST00000651293.1:ENST00000651939.1:ENST00000650787.1:ENST00000651517.1:ENST00000651662.1:ENST00000651638.1:ENST00000670853.1:ENST00000652080.1:ENST00000651294.1:ENST00000652164.1:ENST00000651538.1:ENST00000651033.1:ENST00000651584.1	lncRNA	lncRNA	lncRNA	lncRNA	0	31	2	4.1054	4.46871	4.83202	0.0220205	0.00525002	0.123836	0.0633615
chr9	137610367	137610466	4223410	0	+	0.444444	(0.44,0.476]	chr9	388125	42	INTRON	INTRON	ARRDC1	ENSG00000197070.14	ENST00000483563.5:ENST00000371421.9:ENST00000431925.6:ENST00000461627.1:ENST00000419386.1:ENST00000466367.5:ENST00000495220.5:ENST00000471125.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	31	2	4.1054	4.46871	4.83202	0.0220205	0.00525002	0.123836	0.0633615
chr4	152432792	152432892	2274055	0	-	0.38	(0.378,0.408]	chr4	221114	199	INTRON	INTRON	FBXW7	ENSG00000109670.16	ENST00000281708.10:ENST00000603548.6:ENST00000604872.6:ENST00000647166.1:ENST00000643834.1:ENST00000642901.1	protein_coding	protein_coding	protein_coding	protein_coding	1	64	2	3.22599	4.46855	5.71111	0.00288652	2.59738e-4	0.0494641	0.0148796
chr12	111567280	111567380	5412912	0	-	0.49	(0.476,0.515]	chr12	516941	25	INTRON	INTRON	ATXN2	ENSG00000204842.18	ENST00000642389.2:ENST00000608853.5:ENST00000672613.1:ENST00000673436.1:ENST00000643669.2:ENST00000616825.4:ENST00000389153.10:ENST00000550104.5:ENST00000483311.6:ENST00000672335.1:ENST00000673557.1:ENST00000673283.1:ENST00000673449.1:ENST00000535949.5:ENST00000542287.6:ENST00000644883.1:ENST00000647305.1:ENST00000671792.1:ENST00000392645.6:ENST00000672105.1:ENST00000549455.1:ENST00000548492.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	62	2	3.62464	4.46761	5.31058	9.15544e-4	5.079e-4	0.0278396	0.0202328
chr17	7869753	7869853	6719698	0	-	0.41	(0.408,0.44]	chr17	659229	28	INTRON	INTRON	NAA38	ENSG00000183011.14	ENST00000576861.5:ENST00000570555.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	30	2	4.23096	4.46753	4.7041	0.0278028	0.00381677	0.123904	0.0562562
chr2	128129379	128129479	862866	0	+	0.42	(0.408,0.44]	chr2	96734	2	SS5_PROX	SS5_PROX:INTRON	UGGT1	ENSG00000136731.13	ENST00000259253.11:ENST00000438277.5:ENST00000376723.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	30	2	4.23096	4.46753	4.7041	0.0278028	0.00381677	0.123904	0.0562562
chr20	35141079	35141178	7333175	0	-	0.414141	(0.408,0.44]	chr20	747022	27	INTRON	INTRON	EDEM2	ENSG00000088298.13	ENST00000374492.8:ENST00000374491.3	protein_coding	protein_coding	protein_coding	protein_coding	0	30	2	4.23096	4.46753	4.7041	0.0278028	0.00381677	0.123904	0.0562562
chr5	60819746	60819846	2628213	0	-	0.44	(0.408,0.44]	chr5	249688	167	INTRON	INTRON	ELOVL7	ENSG00000164181.14	ENST00000508821.6:ENST00000425382.5:ENST00000505959.5:ENST00000507047.5:ENST00000511799.5:ENST00000514809.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	30	2	4.23096	4.46753	4.7041	0.0278028	0.00381677	0.123904	0.0562562
chr6	15406925	15407025	2824557	0	+	0.43	(0.408,0.44]	chr6	265198	323	INTRON	INTRON	JARID2	ENSG00000008083.14	ENST00000341776.7:ENST00000397311.4	protein_coding	protein_coding	protein_coding	protein_coding	0	30	2	4.23096	4.46753	4.7041	0.0278028	0.00381677	0.123904	0.0562562
chr9	69731341	69731440	4263672	0	-	0.414141	(0.408,0.44]	chr9	392381	74	INTRON	INTRON	PTAR1	ENSG00000188647.13	ENST00000377200.9:ENST00000340434.5	protein_coding	protein_coding	protein_coding	protein_coding	0	30	2	4.23096	4.46753	4.7041	0.0278028	0.00381677	0.123904	0.0562562
chr11	74239656	74239756	4827217	0	+	0.58	(0.57,1]	chr11	450498	4	SS5_PROX	SS5_PROX:INTRON	PPME1	ENSG00000214517.10	ENST00000328257.13:ENST00000398427.6:ENST00000543525.3:ENST00000535205.5:ENST00000541340.5:ENST00000538501.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	23	2	4.37136	4.467505	4.56365	0.00345135	0.00129848	0.0517761	0.0333764
chr12	64611508	64611579	5155007	0	+	0.676056	(0.57,1]	chr12	488092	2	EXON_LNCRNA	EXON_LNCRNA:INTRON	RASSF3	ENSG00000153179.13	ENST00000637125.1:ENST00000542104.6:ENST00000283172.8:ENST00000336061.2:ENST00000540088.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	23	2	4.37136	4.467505	4.56365	0.00345135	0.00129848	0.0517761	0.0333764
chr14	24232002	24232075	5845145	0	-	0.589041	(0.57,1]	chr14	556081	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NEDD8	ENSG00000129559.13	ENST00000250495.10:ENST00000396828.8:ENST00000531430.5:ENST00000526430.1:ENST00000524927.1:ENST00000533242.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	23	2	4.37136	4.467505	4.56365	0.00345135	0.00129848	0.0517761	0.0333764
chr7	152211752	152211852	3679015	0	-	0.59	(0.57,1]	chr7	341526	29	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000683200.1:ENST00000682283.1:ENST00000473186.5:ENST00000679882.1:ENST00000680969.1:ENST00000681033.1:ENST00000682176.1:ENST00000679645.1:ENST00000684550.1:ENST00000489110.2:ENST00000681838.1:ENST00000683490.1:ENST00000684623.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	23	2	4.37136	4.467505	4.56365	0.00345135	0.00129848	0.0517761	0.0333764
chr9	123857966	123858066	4345303	0	-	0.58	(0.57,1]	chr9	399130	596	INTRON	INTRON	DENND1A	ENSG00000119522.17	ENST00000373624.6:ENST00000394215.7:ENST00000373620.7:ENST00000373618.1	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	4.37136	4.467505	4.56365	0.00345135	0.00129848	0.0517761	0.0333764
chr1	55085541	55085641	464530	0	-	0.42	(0.408,0.44]	chr1	55986	2	SS5_PROX	SS5_PROX:INTRON	USP24	ENSG00000162402.14	ENST00000294383.7:ENST00000472566.1:ENST00000512504.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	32	2	3.97679	4.46748	4.95817	0.0299485	0.00372419	0.142135	0.0535094
chr2	201146129	201146228	981845	0	+	0.434343	(0.408,0.44]	chr2	105421	3	INTRON	INTRON	CFLAR	ENSG00000003402.21	ENST00000443227.5:ENST00000309955.8:ENST00000341582.10:ENST00000342795.9:ENST00000423241.6:ENST00000439154.6:ENST00000457277.5:ENST00000462763.5:ENST00000479953.6:ENST00000474842.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	32	2	3.97679	4.46748	4.95817	0.0299485	0.00372419	0.142135	0.0535094
chr20	43671438	43671536	7276099	0	+	0.428571	(0.408,0.44]	chr20	739717	38	INTRON	INTRON	MYBL2	ENSG00000101057.16	ENST00000396863.8:ENST00000217026.5	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	3.97679	4.46748	4.95817	0.0299485	0.00372419	0.142135	0.0535094
chr7	102143367	102143467	3369636	0	+	0.44	(0.408,0.44]	chr7	315274	177	INTRON	INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000560541.5:ENST00000558836.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	32	2	3.97679	4.46748	4.95817	0.0299485	0.00372419	0.142135	0.0535094
chr11	662088	662187	4889144	0	-	0.525253	(0.515,0.57]	chr11	457709	19	INTRON	INTRON	DEAF1	ENSG00000177030.19	ENST00000382409.4:ENST00000527170.5:ENST00000685854.1:ENST00000683307.1:ENST00000528864.6:ENST00000525626.6:ENST00000682936.1:ENST00000690068.1:ENST00000692634.1:ENST00000687329.1:ENST00000686001.1:ENST00000689835.1:ENST00000525904.5:ENST00000530813.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	29	2	4.08538	4.46737	4.84936	0.0253843	0.00146032	0.12011	0.0349875
chr19	46785552	46785651	7195395	0	-	0.575758	(0.57,1]	chr19	729004	6	INTRON	INTRON	SLC1A5	ENSG00000105281.12	ENST00000542575.6:ENST00000412532.6	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	4.44366	4.467365	4.49107	0.00220544	0.00210922	0.0425419	0.0417893
chr20	63901592	63901692	7301023	0	+	0.63	(0.57,1]	chr20	743135	59	INTRON	INTRON	DNAJC5	ENSG00000101152.11	ENST00000360864.9:ENST00000470551.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	23	2	4.44366	4.467365	4.49107	0.00220544	0.00210922	0.0425419	0.0417893
chr22	46348493	46348593	7534015	0	+	0.66	(0.57,1]	chr22	770387	6	INTRON	INTRON	TRMU	ENSG00000100416.15	ENST00000486620.5:ENST00000441818.5:ENST00000381021.7:ENST00000453630.5:ENST00000456595.5:ENST00000457572.5:ENST00000645190.1:ENST00000645026.1:ENST00000647301.1:ENST00000642562.1:ENST00000381019.3:ENST00000642923.1:ENST00000496831.5:ENST00000465378.6:ENST00000644006.1:ENST00000485175.5:ENST00000643137.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	23	2	4.44366	4.467365	4.49107	0.00220544	0.00210922	0.0425419	0.0417893
chr3	186747418	186747516	1889256	0	-	0.571429	(0.57,1]	chr3	188977	2	INTRON	INTRON	ENSG00000197099	ENSG00000197099.8	ENST00000599314.5:ENST00000626586.1:ENST00000596632.1:ENST00000596329.3:ENST00000625869.1:ENST00000626520.2:ENST00000628291.2:ENST00000626978.2:ENST00000629954.2:ENST00000625690.2:ENST00000629201.2:ENST00000609652.3	lncRNA	lncRNA	lncRNA	lncRNA	0	23	2	4.44366	4.467365	4.49107	0.00220544	0.00210922	0.0425419	0.0417893
chr5	139191749	139191849	2735395	0	-	0.58	(0.57,1]	chr5	257604	33	INTRON	INTRON	SIL1	ENSG00000120725.13	ENST00000394817.7:ENST00000265195.9:ENST00000509534.5:ENST00000508639.5:ENST00000507002.5:ENST00000505830.5:ENST00000504666.5:ENST00000509400.5:ENST00000440765.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	23	2	4.44366	4.467365	4.49107	0.00220544	0.00210922	0.0425419	0.0417893
chr6	30914474	30914565	2842252	0	+	0.626374	(0.57,1]	chr6	267281	4	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	VARS2	ENSG00000137411.19	ENST00000321897.9:ENST00000672801.1:ENST00000625423.2:ENST00000676266.1:ENST00000428017.5:ENST00000467717.5:ENST00000541562.6:ENST00000421263.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	23	2	4.44366	4.467365	4.49107	0.00220544	0.00210922	0.0425419	0.0417893
chr22	24045448	24045547	7485507	0	+	0.424242	(0.408,0.44]	chr22	763770	20	INTRON	INTRON	CABIN1	ENSG00000099991.18	ENST00000454754.5:ENST00000263119.10:ENST00000617531.4:ENST00000405822.6:ENST00000445422.5:ENST00000398319.6	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.00385	4.467045000000001	4.93024	0.0454568	0.00170369	0.149888	0.0381936
chr16	351570	351669	6426846	0	-	0.50505	(0.476,0.515]	chr16	617508	41	INTRON	INTRON	AXIN1	ENSG00000103126.15	ENST00000262320.8:ENST00000354866.7:ENST00000481769.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	67	2	3.64127	4.46704	5.29281	6.42302e-4	4.07635e-4	0.0231685	0.0181306
chr1	27779312	27779412	54569	0	+	0.42	(0.408,0.44]	chr1	7050	54	INTRON	INTRON	STX12	ENSG00000117758.14	ENST00000373943.9:ENST00000440806.2:ENST00000468761.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	30	2	4.334	4.466894999999999	4.59979	0.011982	0.0109537	0.0962115	0.0873034
chr1	200561878	200561977	617131	0	-	0.424242	(0.408,0.44]	chr1	72958	6	INTRON	INTRON	KIF14	ENSG00000118193.12	ENST00000614960.4:ENST00000367350.5	protein_coding	protein_coding	protein_coding	protein_coding	0	30	2	4.334	4.466894999999999	4.59979	0.011982	0.0109537	0.0962115	0.0873034
chr12	113230263	113230363	5231615	0	+	0.43	(0.408,0.44]	chr12	496113	29	INTRON	INTRON	TPCN1	ENSG00000186815.13	ENST00000552642.5:ENST00000547275.5:ENST00000552985.5:ENST00000550873.5:ENST00000551096.5:ENST00000551099.5:ENST00000552897.5:ENST00000550785.5:ENST00000335509.11:ENST00000549279.1:ENST00000552077.5:ENST00000541517.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	30	2	4.334	4.466894999999999	4.59979	0.011982	0.0109537	0.0962115	0.0873034
chr17	38769390	38769490	6764485	0	-	0.44	(0.408,0.44]	chr17	665254	38	UTR3	UTR3:EXON_MRNA	PIP4K2B	ENSG00000276293.5	ENST00000619039.5	protein_coding	protein_coding	protein_coding	protein_coding	0	30	2	4.334	4.466894999999999	4.59979	0.011982	0.0109537	0.0962115	0.0873034
chr19	52547738	52547838	7095461	0	+	0.41	(0.408,0.44]	chr19	711363	1	SS5_PROX	SS5_PROX:INTRON	ZNF808	ENSG00000198482.14	ENST00000487863.5:ENST00000465448.5:ENST00000359798.9:ENST00000486474.5:ENST00000461779.5:ENST00000461321.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	30	2	4.334	4.466894999999999	4.59979	0.011982	0.0109537	0.0962115	0.0873034
chr3	52458337	52458426	1428285	0	+	0.41573	(0.408,0.44]	chr3	150826	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NISCH	ENSG00000010322.16	ENST00000479054.5:ENST00000345716.9:ENST00000420808.2:ENST00000488380.5	protein_coding	protein_coding	protein_coding	protein_coding	0	30	2	4.334	4.466894999999999	4.59979	0.011982	0.0109537	0.0962115	0.0873034
chr3	60535009	60535109	1714964	0	-	0.41	(0.408,0.44]	chr3	176138	4543	INTRON	INTRON	FHIT	ENSG00000189283.10	ENST00000492590.6:ENST00000476844.5:ENST00000468189.5:ENST00000488467.5	protein_coding	protein_coding	protein_coding	protein_coding	0	30	2	4.334	4.466894999999999	4.59979	0.011982	0.0109537	0.0962115	0.0873034
chr5	55330298	55330397	2355314	0	+	0.424242	(0.408,0.44]	chr5	227152	10	INTRON	INTRON	MTREX	ENSG00000039123.16	ENST00000230640.10:ENST00000506750.5:ENST00000504997.1:ENST00000505565.5:ENST00000502953.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	30	2	4.334	4.466894999999999	4.59979	0.011982	0.0109537	0.0962115	0.0873034
chr7	99123197	99123297	3582936	0	-	0.41	(0.408,0.44]	chr7	333710	16	INTRON	INTRON	SMURF1	ENSG00000198742.10	ENST00000361368.7:ENST00000361125.1:ENST00000472627.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	30	2	4.334	4.466894999999999	4.59979	0.011982	0.0109537	0.0962115	0.0873034
chr8	55963038	55963137	3755179	0	+	0.434343	(0.408,0.44]	chr8	349299	74	INTRON	INTRON	LYN	ENSG00000254087.8	ENST00000519728.6:ENST00000520220.6:ENST00000420292.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	30	2	4.334	4.466894999999999	4.59979	0.011982	0.0109537	0.0962115	0.0873034
chr9	2821094	2821194	4228332	0	-	0.44	(0.408,0.44]	chr9	388688	6	INTRON	INTRON	PUM3	ENSG00000080608.10	ENST00000397885.3	protein_coding	protein_coding	protein_coding	protein_coding	0	30	2	4.334	4.466894999999999	4.59979	0.011982	0.0109537	0.0962115	0.0873034
chr14	100359354	100359454	5968725	0	-	0.36	(0.35,0.378]	chr14	567084	44	INTRON	INTRON	WARS1	ENSG00000140105.18	ENST00000392882.7:ENST00000358655.8:ENST00000355338.6:ENST00000344102.9:ENST00000557135.5:ENST00000556645.5:ENST00000553395.5:ENST00000556504.5:ENST00000554084.5:ENST00000557722.5:ENST00000557297.5:ENST00000556435.5:ENST00000553808.5:ENST00000554331.5:ENST00000555063.5:ENST00000556338.5:ENST00000557239.5:ENST00000556698.5:ENST00000553524.5:ENST00000555410.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	32	2	3.97032	4.466810000000001	4.9633	0.0578667	0.00198929	0.167723	0.0411469
chr1	108333256	108333356	176971	0	+	0.29	(0.28,0.32]	chr1	19172	2	SS3_PROX	SS3_PROX:INTRON	SLC25A24P1	ENSG00000241361.8	ENST00000411846.6:ENST00000434803.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	33	2	4.03345	4.466535	4.89962	0.0704058	0.00425206	0.184298	0.0595557
chr10	107016476	107016576	4689795	0	-	0.32	(0.28,0.32]	chr10	432765	595	INTRON	INTRON	SORCS1	ENSG00000108018.16	ENST00000263054.11	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.03345	4.466535	4.89962	0.0704058	0.00425206	0.184298	0.0595557
chr15	45595714	45595812	6018426	0	+	0.306122	(0.28,0.32]	chr15	573546	31	INTRON	INTRON	BLOC1S6	ENSG00000104164.12	ENST00000567740.5:ENST00000567461.5:ENST00000568963.5:ENST00000562384.5:ENST00000569076.5:ENST00000566753.5:ENST00000568597.5:ENST00000220531.9:ENST00000567523.5:ENST00000566184.1:ENST00000565216.5:ENST00000672455.1:ENST00000564310.2:ENST00000563000.5:ENST00000565323.6:ENST00000566801.5:ENST00000568816.5:ENST00000563160.5:ENST00000565727.5:ENST00000565409.5:ENST00000564765.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	33	2	4.03345	4.466535	4.89962	0.0704058	0.00425206	0.184298	0.0595557
chr5	159272321	159272421	2528546	0	+	0.29	(0.28,0.32]	chr5	241910	2	SS5_PROX	SS5_PROX:INTRON	UBLCP1	ENSG00000164332.8	ENST00000296786.8	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.03345	4.466535	4.89962	0.0704058	0.00425206	0.184298	0.0595557
chr6	132787133	132787233	3222708	0	-	0.32	(0.28,0.32]	chr6	299625	3	SS5_PROX	SS5_PROX:INTRON	SLC18B1	ENSG00000146409.12	ENST00000275227.9:ENST00000647932.1:ENST00000650278.1:ENST00000650136.1:ENST00000650298.1:ENST00000367918.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	33	2	4.03345	4.466535	4.89962	0.0704058	0.00425206	0.184298	0.0595557
chr7	131435002	131435101	3417523	0	+	0.282828	(0.28,0.32]	chr7	319237	55	INTRON	INTRON	MKLN1	ENSG00000128585.18	ENST00000421797.6:ENST00000352689.11:ENST00000494785.5:ENST00000458153.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	33	2	4.03345	4.466535	4.89962	0.0704058	0.00425206	0.184298	0.0595557
chr1	15635651	15635749	33667	0	+	0.520408	(0.515,0.57]	chr1	4099	14	INTRON	INTRON	DDI2	ENSG00000197312.12	ENST00000480945.6:ENST00000320153.10:ENST00000483899.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	29	2	4.17037	4.466405	4.76244	0.0139194	0.00362147	0.10247	0.0533855
chr14	69397830	69397930	5916302	0	-	0.53	(0.515,0.57]	chr14	562070	2	SS5_PROX	SS5_PROX:INTRON	ERH	ENSG00000100632.11	ENST00000557016.6:ENST00000216520.6:ENST00000555373.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	29	2	4.17037	4.466405	4.76244	0.0139194	0.00362147	0.10247	0.0533855
chr22	38720158	38720256	7514453	0	+	0.561224	(0.515,0.57]	chr22	767619	28	INTRON	INTRON	GTPBP1	ENSG00000100226.16	ENST00000216044.10:ENST00000418601.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	29	2	4.17037	4.466405	4.76244	0.0139194	0.00362147	0.10247	0.0533855
chr6	5685606	5685706	2796918	0	+	0.52	(0.515,0.57]	chr6	263693	719	INTRON	INTRON	FARS2	ENSG00000145982.13	ENST00000324331.10:ENST00000648580.1:ENST00000274680.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	29	2	4.17037	4.466405	4.76244	0.0139194	0.00362147	0.10247	0.0533855
chrX	68502833	68502932	7673808	0	+	0.525253	(0.515,0.57]	chrX	785401	33	INTRON	INTRON	YIPF6	ENSG00000181704.12	ENST00000451537.5:ENST00000374622.3:ENST00000470730.5:ENST00000374643.7:ENST00000462683.6:ENST00000462972.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	29	2	4.17037	4.466405	4.76244	0.0139194	0.00362147	0.10247	0.0533855
chr22	20736008	20736108	7558420	0	-	0.47	(0.44,0.476]	chr22	773042	2	SS5_PROX	SS5_PROX:INTRON	PI4KA	ENSG00000241973.11	ENST00000255882.11:ENST00000494113.1:ENST00000477368.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	84	2	2.78129	4.466345	6.1514	0.00229634	2.2546e-5	0.0439319	0.00386909
chr6	138409017	138409116	2966989	0	+	0.464646	(0.44,0.476]	chr6	278923	25	INTRON	INTRON	HEBP2	ENSG00000051620.11	ENST00000448741.5:ENST00000607197.6:ENST00000367697.7:ENST00000453452.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	84	2	2.78129	4.466345	6.1514	0.00229634	2.2546e-5	0.0439319	0.00386909
chr3	13348893	13348993	1617867	0	-	0.38	(0.378,0.408]	chr3	167134	52	INTRON	INTRON	NUP210	ENSG00000132182.13	ENST00000254508.7:ENST00000695490.1:ENST00000695491.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	68	2	3.39872	4.4658549999999995	5.53299	0.0019852	1.47095e-4	0.0404516	0.0105341
chr17	62687100	62687198	6654915	0	+	0.438776	(0.408,0.44]	chr17	649558	44	INTRON	INTRON	MRC2	ENSG00000011028.14	ENST00000303375.10:ENST00000583597.5:ENST00000446119.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	31	2	4.10594	4.46562	4.8253	0.0219367	0.0056738	0.123836	0.0653997
chr19	19038557	19038645	7033887	0	+	0.409091	(0.408,0.44]	chr19	701166	5	INTRON	INTRON	ARMC6	ENSG00000105676.14	ENST00000392335.6:ENST00000537263.5:ENST00000535612.6:ENST00000540707.5:ENST00000269932.10:ENST00000541725.5:ENST00000546344.5:ENST00000540792.5:ENST00000536098.5:ENST00000541898.5:ENST00000539985.5:ENST00000543877.1:ENST00000545091.5:ENST00000535288.1:ENST00000538663.5:ENST00000392336.7:ENST00000535758.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	31	2	4.10594	4.46562	4.8253	0.0219367	0.0056738	0.123836	0.0653997
chr1	89833394	89833493	159647	0	+	0.373737	(0.35,0.378]	chr1	17270	109	INTRON	INTRON	LRRC8D	ENSG00000171492.14	ENST00000525774.5:ENST00000337338.9:ENST00000394593.7	protein_coding	protein_coding	protein_coding	protein_coding	2	87	2	3.2393	4.465595	5.69189	3.71413e-4	2.86552e-4	0.0178698	0.0150568
chr14	101829008	101829107	5819181	0	+	0.373737	(0.35,0.378]	chr14	551860	37	INTRON	INTRON	PPP2R5C	ENSG00000078304.20	ENST00000694906.1:ENST00000422945.6:ENST00000554442.5:ENST00000328724.9:ENST00000553890.1:ENST00000350249.7:ENST00000557621.5:ENST00000556946.1:ENST00000556307.5:ENST00000553730.5:ENST00000557714.1:ENST00000334743.9:ENST00000445439.7:ENST00000557095.5:ENST00000556493.1:ENST00000553842.1:ENST00000556373.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	105	2	3.03138	4.465485	5.89959	1.86201e-4	1.52893e-4	0.0119078	0.0112857
chr1	9850423	9850521	375469	0	-	0.316327	(0.28,0.32]	chr1	43792	23	UTR3	UTR3:EXON_MRNA	CTNNBIP1	ENSG00000178585.15	ENST00000377263.6:ENST00000400904.7:ENST00000377258.5	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.12807	4.4653100000000006	4.80255	0.0338135	0.0137406	0.146709	0.0949306
chr1	32621766	32621861	415420	0	-	0.305263	(0.28,0.32]	chr1	50102	11	UTR3	UTR3:EXON_MRNA:INTRON	ZBTB8OS	ENSG00000176261.16	ENST00000341885.6:ENST00000468695.6:ENST00000492007.6:ENST00000373506.8:ENST00000436661.6:ENST00000473294.7:ENST00000373501.6:ENST00000498691.5:ENST00000467652.5:ENST00000476493.6:ENST00000465588.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	33	2	4.12807	4.4653100000000006	4.80255	0.0338135	0.0137406	0.146709	0.0949306
chr1	50836446	50836546	451017	0	-	0.32	(0.28,0.32]	chr1	54261	344	INTRON	INTRON	FAF1	ENSG00000185104.21	ENST00000396153.7:ENST00000487898.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	33	2	4.12807	4.4653100000000006	4.80255	0.0338135	0.0137406	0.146709	0.0949306
chr14	58418247	58418347	5904848	0	-	0.29	(0.28,0.32]	chr14	560873	59	INTRON	INTRON	TIMM9	ENSG00000100575.14	ENST00000395159.7:ENST00000216463.8:ENST00000555593.5:ENST00000556007.6:ENST00000557397.5:ENST00000556367.6:ENST00000555930.6:ENST00000555404.5:ENST00000555097.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	33	2	4.12807	4.4653100000000006	4.80255	0.0338135	0.0137406	0.146709	0.0949306
chr14	105434291	105434390	5830787	0	+	0.313131	(0.28,0.32]	chr14	553564	139	INTRON	INTRON	TEX22:MTA1	ENSG00000226174.7:ENSG00000182979.18	ENST00000548638.5:ENST00000435036.6:ENST00000331320.12:ENST00000406191.5:ENST00000405646.5:ENST00000438610.5:ENST00000551236.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	33	2	4.12807	4.4653100000000006	4.80255	0.0338135	0.0137406	0.146709	0.0949306
chr18	70108997	70109097	6986469	0	-	0.3	(0.28,0.32]	chr18	691497	1	SS5_PROX	SS5_PROX:INTRON	RTTN	ENSG00000176225.15	ENST00000640769.2:ENST00000255674.11:ENST00000583043.5:ENST00000679113.1:ENST00000579986.6:ENST00000639128.1:ENST00000677824.1:ENST00000581161.5:ENST00000640931.1:ENST00000638251.1:ENST00000640408.1:ENST00000581709.1:ENST00000640376.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	33	2	4.12807	4.4653100000000006	4.80255	0.0338135	0.0137406	0.146709	0.0949306
chr2	63579611	63579711	1136226	0	-	0.29	(0.28,0.32]	chr2	121884	76	INTRON	INTRON	WDPCP	ENSG00000143951.16	ENST00000272321.12:ENST00000409562.7:ENST00000409835.5:ENST00000417238.5:ENST00000418148.5:ENST00000490935.5:ENST00000431065.1:ENST00000467687.1:ENST00000484073.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	33	2	4.12807	4.4653100000000006	4.80255	0.0338135	0.0137406	0.146709	0.0949306
chr7	110806508	110806608	3616542	0	-	0.29	(0.28,0.32]	chr7	337078	808	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000487733.5:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	33	2	4.12807	4.4653100000000006	4.80255	0.0338135	0.0137406	0.146709	0.0949306
chr1	193142466	193142566	284821	0	+	0.27	[0,0.28]	chr1	32788	4	SS5_PROX	SS5_PROX:INTRON	CDC73	ENSG00000134371.14	ENST00000649895.1:ENST00000643006.1:ENST00000367435.5:ENST00000650197.1:ENST00000643784.1:ENST00000648071.1:ENST00000635846.1:ENST00000649606.1:ENST00000647662.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	33	2	4.29536	4.465294999999999	4.63523	0.0590175	0.0139836	0.167915	0.10247
chr15	25417515	25417613	6121624	0	-	0.234694	[0,0.28]	chr15	582921	13	INTRON	INTRON	UBE3A	ENSG00000114062.22	ENST00000648336.2:ENST00000438097.6:ENST00000635914.1:ENST00000638155.1:ENST00000637886.1:ENST00000638011.1:ENST00000649550.1:ENST00000650110.1:ENST00000630424.2:ENST00000566215.5:ENST00000428984.6:ENST00000675177.1:ENST00000675593.1:ENST00000625778.3:ENST00000675000.1:ENST00000626793.2:ENST00000628733.2:ENST00000630907.2:ENST00000675038.1:ENST00000629886.2:ENST00000628267.2:ENST00000629252.2:ENST00000625681.2:ENST00000626589.2:ENST00000627018.1:ENST00000676452.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	33	2	4.29536	4.465294999999999	4.63523	0.0590175	0.0139836	0.167915	0.10247
chr16	335858	335958	6426688	0	-	0.28	[0,0.28]	chr16	617500	208	INTRON	INTRON	AXIN1	ENSG00000103126.15	ENST00000262320.8:ENST00000461023.5:ENST00000354866.7:ENST00000481769.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	33	2	4.29536	4.465294999999999	4.63523	0.0590175	0.0139836	0.167915	0.10247
chr2	58164372	58164467	1125960	0	-	0.252632	[0,0.28]	chr2	120888	10	UTR3	UTR3:EXON_MRNA:INTRON	FANCL	ENSG00000115392.13	ENST00000696400.1:ENST00000403295.8:ENST00000696492.1:ENST00000427708.7:ENST00000696314.1:ENST00000696315.1:ENST00000696454.1:ENST00000696508.1:ENST00000696548.1:ENST00000696542.1:ENST00000696432.1:ENST00000696319.1:ENST00000403676.6:ENST00000696433.1:ENST00000696434.1:ENST00000696499.1:ENST00000696564.1:ENST00000402135.8:ENST00000696546.1:ENST00000233741.9:ENST00000696316.1:ENST00000696378.1:ENST00000696435.1:ENST00000696493.1:ENST00000696543.1:ENST00000696544.1:ENST00000696545.1:ENST00000696565.1:ENST00000696620.1:ENST00000696621.1:ENST00000696635.1:ENST00000696364.1:ENST00000696634.1:ENST00000696619.1:ENST00000696317.1:ENST00000696622.1:ENST00000696467.1:ENST00000696547.1:ENST00000449070.6:ENST00000696305.1:ENST00000417361.2:ENST00000696338.1:ENST00000696361.1:ENST00000696318.1:ENST00000696371.1:ENST00000696409.1:ENST00000696410.1:ENST00000696455.1:ENST00000696468.1:ENST00000696527.1:ENST00000696567.1:ENST00000696324.1:ENST00000696566.1:ENST00000696623.1:ENST00000446381.6:ENST00000696469.1:ENST00000696624.1:ENST00000696411.1:ENST00000696475.1:ENST00000696636.1:ENST00000470506.2:ENST00000696358.1:ENST00000696372.1:ENST00000696373.1:ENST00000696359.1:ENST00000696394.1:ENST00000696320.1:ENST00000696339.1:ENST00000696395.1:ENST00000696341.1:ENST00000696340.1:ENST00000696374.1:ENST00000696396.1:ENST00000696412.1:ENST00000696375.1:ENST00000696342.1:ENST00000696325.1:ENST00000696399.1:ENST00000696398.1:ENST00000696306.1:ENST00000696397.1:ENST00000696360.1:ENST00000696344.1:ENST00000696343.1:ENST00000696637.1:ENST00000696362.1:ENST00000696528.1:ENST00000696497.1:ENST00000696326.1:ENST00000696638.1:ENST00000696625.1:ENST00000696376.1:ENST00000696639.1:ENST00000696510.1:ENST00000696438.1:ENST00000696496.1:ENST00000696509.1:ENST00000696569.1:ENST00000696457.1:ENST00000696458.1:ENST00000696473.1:ENST00000696495.1:ENST00000696415.1:ENST00000696472.1:ENST00000696494.1:ENST00000696363.1:ENST00000696414.1:ENST00000696529.1:ENST00000696471.1:ENST00000696439.1:ENST00000696437.1:ENST00000696413.1:ENST00000696436.1:ENST00000696470.1:ENST00000696459.1:ENST00000696474.1:ENST00000696498.1:ENST00000696532.1:ENST00000696416.1:ENST00000696530.1:ENST00000696460.1:ENST00000696570.1:ENST00000696531.1:ENST00000696440.1:ENST00000696307.1:ENST00000696401.1:ENST00000696345.1:ENST00000696377.1:ENST00000696402.1:ENST00000696417.1:ENST00000696594.1:ENST00000696595.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	33	2	4.29536	4.465294999999999	4.63523	0.0590175	0.0139836	0.167915	0.10247
chr2	171748382	171748480	918337	0	+	0.204082	[0,0.28]	chr2	101170	6	UTR3	UTR3:EXON_MRNA	DYNC1I2	ENSG00000077380.16	ENST00000340296.8:ENST00000397119.8:ENST00000508530.5:ENST00000409197.5:ENST00000409773.5:ENST00000409453.5:ENST00000482454.5:ENST00000479806.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	33	2	4.29536	4.465294999999999	4.63523	0.0590175	0.0139836	0.167915	0.10247
chr3	48921279	48921379	1421471	0	+	0.27	[0,0.28]	chr3	149453	4	SS3_PROX	SS3_PROX:INTRON	ARIH2	ENSG00000177479.20	ENST00000478224.5:ENST00000430423.5:ENST00000452882.5:ENST00000498314.5:ENST00000474618.5:ENST00000492077.5:ENST00000449376.5:ENST00000490095.5:ENST00000463738.5:ENST00000356401.9:ENST00000495761.5:ENST00000483333.5:ENST00000482427.5:ENST00000488963.5:ENST00000420814.5:ENST00000486316.5:ENST00000449729.5:ENST00000433170.5:ENST00000474936.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	33	2	4.29536	4.465294999999999	4.63523	0.0590175	0.0139836	0.167915	0.10247
chr3	167730005	167730103	1854002	0	-	0.244898	[0,0.28]	chr3	186326	42	INTRON	INTRON	PDCD10	ENSG00000114209.15	ENST00000392750.7:ENST00000473645.6:ENST00000497056.6:ENST00000461494.5:ENST00000470131.5:ENST00000475915.6:ENST00000487947.6:ENST00000471885.5:ENST00000462725.6:ENST00000492139.5:ENST00000483451.5:ENST00000494502.6:ENST00000464360.5:ENST00000481136.1:ENST00000487678.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	33	2	4.29536	4.465294999999999	4.63523	0.0590175	0.0139836	0.167915	0.10247
chr4	103162248	103162345	2215233	0	-	0.278351	[0,0.28]	chr4	217108	4	INTRON	INTRON	CENPE	ENSG00000138778.14	ENST00000380026.8:ENST00000265148.9	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.29536	4.465294999999999	4.63523	0.0590175	0.0139836	0.167915	0.10247
chr4	143368626	143368726	2054391	0	+	0.26	[0,0.28]	chr4	203721	247	INTRON	INTRON	GAB1	ENSG00000109458.9	ENST00000262995.8:ENST00000262994.9:ENST00000514639.5	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.29536	4.465294999999999	4.63523	0.0590175	0.0139836	0.167915	0.10247
chr6	99562658	99562749	3167298	0	-	0.241758	[0,0.28]	chr6	295538	8	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	CCNC	ENSG00000112237.13	ENST00000520429.6:ENST00000326298.8:ENST00000369220.8:ENST00000520371.5:ENST00000523961.5:ENST00000523799.5:ENST00000523985.5:ENST00000518714.5:ENST00000484049.6:ENST00000524049.5:ENST00000627680.2:ENST00000521017.5:ENST00000523639.5:ENST00000369217.8:ENST00000482541.2:ENST00000523541.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	33	2	4.29536	4.465294999999999	4.63523	0.0590175	0.0139836	0.167915	0.10247
chr7	24637224	24637324	3291359	0	+	0.27	[0,0.28]	chr7	305736	127	INTRON	INTRON	PALS2	ENSG00000105926.16	ENST00000432190.5:ENST00000409761.5:ENST00000222644.10:ENST00000396475.6:ENST00000430180.5:ENST00000426450.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	33	2	4.29536	4.465294999999999	4.63523	0.0590175	0.0139836	0.167915	0.10247
chr7	45015934	45016034	3316068	0	+	0.28	[0,0.28]	chr7	308173	152	INTRON	INTRON	CCM2	ENSG00000136280.17	ENST00000461377.5:ENST00000544363.5:ENST00000541586.5:ENST00000478582.5:ENST00000258781.11:ENST00000488727.5:ENST00000648329.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	33	2	4.29536	4.465294999999999	4.63523	0.0590175	0.0139836	0.167915	0.10247
chr7	105320367	105320467	3603220	0	-	0.25	[0,0.28]	chr7	336161	134	INTRON	INTRON	SRPK2	ENSG00000135250.17	ENST00000393651.8:ENST00000482897.5:ENST00000460391.5:ENST00000462282.5:ENST00000465112.5:ENST00000482862.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	33	2	4.29536	4.465294999999999	4.63523	0.0590175	0.0139836	0.167915	0.10247
chr7	152194853	152194949	3678838	0	-	0.239583	[0,0.28]	chr7	341502	4	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000683200.1:ENST00000682283.1:ENST00000473186.5:ENST00000679882.1:ENST00000680969.1:ENST00000681033.1:ENST00000682176.1:ENST00000679645.1:ENST00000683185.1:ENST00000683254.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	33	2	4.29536	4.465294999999999	4.63523	0.0590175	0.0139836	0.167915	0.10247
chrX	24856955	24857055	7633362	0	+	0.27	[0,0.28]	chrX	781789	129	INTRON	INTRON	POLA1	ENSG00000101868.13	ENST00000672178.1:ENST00000379068.8:ENST00000379059.7:ENST00000611764.2:ENST00000679301.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	33	2	4.29536	4.465294999999999	4.63523	0.0590175	0.0139836	0.167915	0.10247
chr1	39267182	39267280	76521	0	+	0.387755	(0.378,0.408]	chr1	9739	56	INTRON	INTRON	MACF1	ENSG00000127603.32	ENST00000361689.7:ENST00000689911.1:ENST00000567887.5:ENST00000372915.8:ENST00000472385.2:ENST00000693209.1:ENST00000524432.5:ENST00000672812.1:ENST00000564288.6:ENST00000671089.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	30	2	4.41169	4.465115	4.51854	0.0199606	0.00748824	0.109608	0.0772645
chr1	212435526	212435625	308888	0	+	0.393939	(0.378,0.408]	chr1	35661	6	INTRON	INTRON	NENF	ENSG00000117691.10	ENST00000366988.5:ENST00000479589.5:ENST00000473900.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	30	2	4.41169	4.465115	4.51854	0.0199606	0.00748824	0.109608	0.0772645
chr12	93488670	93488769	5189469	0	+	0.393939	(0.378,0.408]	chr12	490858	3	INTRON	INTRON	MRPL42	ENSG00000198015.14	ENST00000549982.6:ENST00000552217.6:ENST00000393128.8:ENST00000552326.5:ENST00000358678.7:ENST00000551396.5:ENST00000549561.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	30	2	4.41169	4.465115	4.51854	0.0199606	0.00748824	0.109608	0.0772645
chr20	34889076	34889176	7261110	0	+	0.4	(0.378,0.408]	chr20	737645	57	INTRON	INTRON	ACSS2	ENSG00000131069.20	ENST00000481971.5:ENST00000488172.5:ENST00000497927.5:ENST00000481284.5:ENST00000475459.6:ENST00000484354.1:ENST00000480274.1:ENST00000477932.5:ENST00000473172.5:ENST00000493805.6:ENST00000480978.5:ENST00000360596.7:ENST00000467019.5:ENST00000253382.5:ENST00000476922.5:ENST00000464399.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	30	2	4.41169	4.465115	4.51854	0.0199606	0.00748824	0.109608	0.0772645
chr3	136712622	136712722	1828064	0	-	0.38	(0.378,0.408]	chr3	183745	813	INTRON	INTRON	STAG1	ENSG00000118007.13	ENST00000383202.7:ENST00000236698.9:ENST00000434713.6:ENST00000483235.5:ENST00000629124.2:ENST00000487065.5:ENST00000480733.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	30	2	4.41169	4.465115	4.51854	0.0199606	0.00748824	0.109608	0.0772645
chr7	101864442	101864542	3366833	0	+	0.39	(0.378,0.408]	chr7	315215	451	INTRON	INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000497815.5:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000607092.1:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000558469.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	30	2	4.41169	4.465115	4.51854	0.0199606	0.00748824	0.109608	0.0772645
chr1	709825	709924	357050	0	-	0.232323	[0,0.28]	chr1	41103	57	INTRON	INTRON	ENSG00000230021	ENSG00000230021.10	ENST00000419394.2:ENST00000634337.2:ENST00000635509.2:ENST00000648019.1:ENST00000440200.5:ENST00000441245.5	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	0	33	2	4.38376	4.46493	4.5461	0.0365918	0.0258536	0.138959	0.133676
chr1	77610051	77610151	492731	0	-	0.27	[0,0.28]	chr1	58292	250	INTRON	INTRON	ZZZ3	ENSG00000036549.13	ENST00000370801.8:ENST00000481346.5:ENST00000476275.5:ENST00000370798.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	33	2	4.38376	4.46493	4.5461	0.0365918	0.0258536	0.138959	0.133676
chr11	57811875	57811972	4793659	0	+	0.216495	[0,0.28]	chr11	443813	5	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	ENSG00000288534:CTNND1	ENSG00000288534.1:ENSG00000198561.16	ENST00000673781.1:ENST00000673810.1:ENST00000674116.1:ENST00000674060.1:ENST00000524630.5:ENST00000529919.5:ENST00000682741.1:ENST00000358694.10:ENST00000361332.8:ENST00000361391.10:ENST00000361796.9:ENST00000415361.6:ENST00000426142.6:ENST00000428599.6:ENST00000525902.5:ENST00000526357.5:ENST00000526772.5:ENST00000527467.5:ENST00000528232.5:ENST00000528621.5:ENST00000529526.5:ENST00000529873.5:ENST00000529986.5:ENST00000530094.5:ENST00000530748.5:ENST00000531014.5:ENST00000532245.5:ENST00000532463.5:ENST00000532649.5:ENST00000532787.5:ENST00000532844.5:ENST00000533667.5:ENST00000534579.5:ENST00000399050.10:ENST00000526938.5:ENST00000531007.2:ENST00000674015.1:ENST00000673826.1:ENST00000673683.1:ENST00000674106.1:ENST00000681984.1:ENST00000683906.1:ENST00000673661.1:ENST00000682621.1:ENST00000683201.1:ENST00000682974.1:ENST00000684035.1:ENST00000683510.1:ENST00000683769.1:ENST00000530720.2:ENST00000684704.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	33	2	4.38376	4.46493	4.5461	0.0365918	0.0258536	0.138959	0.133676
chr13	114263014	114263114	5550716	0	+	0.24	[0,0.28]	chr13	530518	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	CDC16	ENSG00000130177.16	ENST00000360383.7:ENST00000628084.2:ENST00000356221.8:ENST00000650489.1:ENST00000375310.5:ENST00000252457.9:ENST00000375308.5:ENST00000252458.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	33	2	4.38376	4.46493	4.5461	0.0365918	0.0258536	0.138959	0.133676
chr3	191362056	191362156	1589804	0	+	0.28	[0,0.28]	chr3	164593	5	INTRON	INTRON	CCDC50	ENSG00000152492.15	ENST00000392456.4:ENST00000392455.9:ENST00000460064.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	33	2	4.38376	4.46493	4.5461	0.0365918	0.0258536	0.138959	0.133676
chr3	193680074	193680174	1592777	0	+	0.2	[0,0.28]	chr3	164915	112	INTRON	INTRON	OPA1	ENSG00000198836.11	ENST00000361828.7:ENST00000361715.6:ENST00000361150.6:ENST00000361908.8:ENST00000361510.8:ENST00000642445.1:ENST00000646277.1:ENST00000644595.1:ENST00000643737.1:ENST00000644841.1:ENST00000646085.1:ENST00000643329.1:ENST00000646793.1:ENST00000392437.6:ENST00000645553.1:ENST00000642593.1:ENST00000644959.1:ENST00000642289.1:ENST00000646699.1:ENST00000644629.1:ENST00000646544.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	33	2	4.38376	4.46493	4.5461	0.0365918	0.0258536	0.138959	0.133676
chr5	313200	313300	2313041	0	+	0.27	[0,0.28]	chr5	223730	1	SS3_PROX	SS3_PROX:INTRON	PDCD6	ENSG00000249915.9	ENST00000614778.4:ENST00000618970.4:ENST00000513582.5:ENST00000264933.9:ENST00000505221.5:ENST00000507528.5:ENST00000507473.1:ENST00000511482.1:ENST00000512466.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	33	2	4.38376	4.46493	4.5461	0.0365918	0.0258536	0.138959	0.133676
chr5	21504894	21504994	2326187	0	+	0.22	[0,0.28]	chr5	225058	23	INTRON	INTRON	GUSBP1	ENSG00000183666.18	ENST00000508260.5:ENST00000449061.3:ENST00000685731.1:ENST00000688956.1:ENST00000692922.1:ENST00000686144.1:ENST00000607545.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	33	2	4.38376	4.46493	4.5461	0.0365918	0.0258536	0.138959	0.133676
chr9	2817530	2817629	4228296	0	-	0.242424	[0,0.28]	chr9	388682	48	INTRON	INTRON	PUM3	ENSG00000080608.10	ENST00000397885.3	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.38376	4.46493	4.5461	0.0365918	0.0258536	0.138959	0.133676
chr17	62574510	62574610	6653857	0	+	0.48	(0.476,0.515]	chr17	649397	1	SS5_PROX	SS5_PROX:INTRON	TLK2	ENSG00000146872.19	ENST00000582809.5:ENST00000682085.1:ENST00000346027.10:ENST00000326270.13:ENST00000682203.1:ENST00000343388.11:ENST00000683536.1:ENST00000684440.1:ENST00000684772.1:ENST00000682274.1:ENST00000682827.1:ENST00000682075.1:ENST00000683104.1:ENST00000684012.1:ENST00000581041.5:ENST00000684553.1:ENST00000683737.1:ENST00000684133.1:ENST00000584367.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	66	2	4.02209	4.46485	4.90761	0.00386428	6.68973e-5	0.0542786	0.00677892
chr17	19062574	19062669	6570505	0	+	0.536842	(0.515,0.57]	chr17	638906	8	EXON_SMALL	EXON_SMALL	SNORD3B-1	ENSG00000265185.6	ENST00000577988.2	snoRNA	snoRNA	snoRNA	snoRNA	3	117	2	3.67775	4.46479	5.25183	2.6074e-4	3.25763e-6	0.014326	0.00128387
chr1	172572899	172572997	255097	0	+	0.336735	(0.32,0.35]	chr1	30401	18	INTRON	INTRON	SUCO	ENSG00000094975.14	ENST00000367723.8:ENST00000608151.5:ENST00000616058.4:ENST00000263688.4:ENST00000610051.5	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.06299	4.464605000000001	4.86622	0.0559439	0.00354075	0.165463	0.0546236
chr2	15491709	15491809	1072464	0	-	0.33	(0.32,0.35]	chr2	114429	23	INTRON	INTRON	NBAS	ENSG00000151779.13	ENST00000281513.10:ENST00000427792.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	32	2	4.06299	4.464605000000001	4.86622	0.0559439	0.00354075	0.165463	0.0546236
chr2	208248071	208248170	1318602	0	-	0.30303	(0.28,0.32]	chr2	138295	8	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	IDH1	ENSG00000138413.14	ENST00000345146.7:ENST00000446179.5:ENST00000415913.5:ENST00000415282.5:ENST00000462386.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	71	2	3.581	4.464325	5.34765	0.00287138	8.63544e-4	0.0474836	0.0266494
chr21	36398336	36398434	7404513	0	+	0.367347	(0.35,0.378]	chr21	754451	2	INTRON	INTRON	CHAF1B	ENSG00000159259.8	ENST00000314103.6	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	3.94291	4.46426	4.98561	0.0374229	0.00474226	0.155878	0.0600445
chr1	154211733	154211830	558671	0	-	0.309278	(0.28,0.32]	chr1	66316	1	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	C1orf43	ENSG00000143612.21	ENST00000648267.1:ENST00000470180.2:ENST00000350592.7:ENST00000362076.8:ENST00000368521.10:ENST00000640799.1:ENST00000368519.5:ENST00000493814.1:ENST00000368518.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	32	2	4.2432	4.464235	4.68527	0.0479043	0.00819419	0.153019	0.0810802
chr10	59807478	59807578	4622885	0	-	0.29	(0.28,0.32]	chr10	425657	4	SS3_PROX	SS3_PROX:INTRON	CCDC6	ENSG00000108091.11	ENST00000263102.7:ENST00000518638.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	32	2	4.2432	4.464235	4.68527	0.0479043	0.00819419	0.153019	0.0810802
chr12	88107888	88107984	5379265	0	-	0.302083	(0.28,0.32]	chr12	513103	4	INTRON	INTRON	CEP290	ENSG00000198707.17	ENST00000674971.1:ENST00000672414.2:ENST00000673058.2:ENST00000675833.1:ENST00000675476.1:ENST00000309041.12:ENST00000675794.1:ENST00000676074.1:ENST00000675408.1:ENST00000675230.1:ENST00000675628.1:ENST00000552810.6:ENST00000676363.1:ENST00000676448.1:ENST00000604024.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	32	2	4.2432	4.464235	4.68527	0.0479043	0.00819419	0.153019	0.0810802
chr16	24780960	24781060	6329732	0	+	0.32	(0.28,0.32]	chr16	605958	21	INTRON	INTRON	TNRC6A	ENSG00000090905.19	ENST00000395799.8:ENST00000315183.11:ENST00000491718.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	32	2	4.2432	4.464235	4.68527	0.0479043	0.00819419	0.153019	0.0810802
chr17	40407245	40407343	6768260	0	-	0.306122	(0.28,0.32]	chr17	665954	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TOP2A	ENSG00000131747.15	ENST00000423485.6	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.2432	4.464235	4.68527	0.0479043	0.00819419	0.153019	0.0810802
chr3	44926489	44926588	1677335	0	-	0.292929	(0.28,0.32]	chr3	171205	63	UTR3	UTR3:EXON_MRNA:INTRON	ZDHHC3	ENSG00000163812.15	ENST00000339420.7:ENST00000424952.7:ENST00000443879.2:ENST00000296127.7:ENST00000479314.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	32	2	4.2432	4.464235	4.68527	0.0479043	0.00819419	0.153019	0.0810802
chr4	73113691	73113791	2159350	0	-	0.29	(0.28,0.32]	chr4	212666	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ANKRD17	ENSG00000132466.20	ENST00000358602.9:ENST00000558247.5:ENST00000330838.10:ENST00000509867.6:ENST00000561029.1:ENST00000514252.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	32	2	4.2432	4.464235	4.68527	0.0479043	0.00819419	0.153019	0.0810802
chr5	131326519	131326619	2485262	0	+	0.31	(0.28,0.32]	chr5	237120	100	INTRON	INTRON	CDC42SE2	ENSG00000158985.14	ENST00000502840.5:ENST00000511432.5:ENST00000506419.5:ENST00000395246.5:ENST00000505065.2:ENST00000504701.5:ENST00000503291.5:ENST00000360515.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	32	2	4.2432	4.464235	4.68527	0.0479043	0.00819419	0.153019	0.0810802
chr7	77768160	77768257	3343793	0	+	0.28866000000000003	(0.28,0.32]	chr7	311459	1	SS3_PROX	SS3_PROX:INTRON	RSBN1L	ENSG00000187257.16	ENST00000334955.13:ENST00000445288.5:ENST00000445512.5:ENST00000468035.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	32	2	4.2432	4.464235	4.68527	0.0479043	0.00819419	0.153019	0.0810802
chr8	90460684	90460784	3794708	0	+	0.3	(0.28,0.32]	chr8	351816	29	INTRON	INTRON	LINC00534	ENSG00000253394.7	ENST00000655523.1:ENST00000658299.1:ENST00000663329.1:ENST00000655219.1:ENST00000662692.1:ENST00000667296.1:ENST00000667565.1:ENST00000653734.1:ENST00000654785.1:ENST00000524361.5:ENST00000668745.1:ENST00000671657.1	lncRNA	lncRNA	lncRNA	lncRNA	0	32	2	4.2432	4.464235	4.68527	0.0479043	0.00819419	0.153019	0.0810802
chr1	114488767	114488867	527675	0	-	0.38	(0.378,0.408]	chr1	62153	240	INTRON	INTRON	TRIM33	ENSG00000197323.12	ENST00000358465.7:ENST00000369543.6	protein_coding	protein_coding	protein_coding	protein_coding	2	84	2	2.94613	4.464035	5.98194	0.00112461	7.66211e-5	0.0308177	0.00781006
chr6	82185110	82185209	3143127	0	-	0.464646	(0.44,0.476]	chr6	293017	27	INTRON	INTRON	IBTK	ENSG00000005700.15	ENST00000505222.5:ENST00000306270.12:ENST00000610980.4:ENST00000445419.6:ENST00000503400.5:ENST00000503631.5:ENST00000510291.5:ENST00000471036.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	68	2	2.9195	4.463985	6.00847	0.0102021	1.04381e-5	0.0850389	0.00235341
chr2	23941048	23941148	707085	0	+	0.41	(0.408,0.44]	chr2	81931	4	SS5_PROX	SS5_PROX:INTRON	UBXN2A	ENSG00000173960.14	ENST00000446425.2:ENST00000404924.5:ENST00000309033.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	67	2	3.05705	4.46376	5.87047	0.00658331	2.24671e-5	0.0701901	0.0036973
chr10	49841250	49841349	4615181	0	-	0.30303	(0.28,0.32]	chr10	425130	80	INTRON	INTRON	PARG	ENSG00000227345.9	ENST00000402038.7:ENST00000616448.2:ENST00000614063.4:ENST00000610922.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	32	2	4.33863	4.46369	4.58875	0.0230574	0.0207276	0.122348	0.118056
chr2	121550010	121550110	1221394	0	-	0.31	(0.28,0.32]	chr2	130051	193	INTRON	INTRON	CLASP1	ENSG00000074054.20	ENST00000263710.8:ENST00000397587.7:ENST00000541377.5:ENST00000409078.8:ENST00000455322.6	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.33863	4.46369	4.58875	0.0230574	0.0207276	0.122348	0.118056
chr20	21360567	21360666	7248735	0	+	0.292929	(0.28,0.32]	chr20	735993	24	INTRON	INTRON	XRN2	ENSG00000088930.8	ENST00000377191.5	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.33863	4.46369	4.58875	0.0230574	0.0207276	0.122348	0.118056
chr5	131424018	131424116	2717014	0	-	0.316327	(0.28,0.32]	chr5	255424	2	UTR3	UTR3:EXON_MRNA	RAPGEF6	ENSG00000158987.22	ENST00000509018.6:ENST00000671916.1	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.33863	4.46369	4.58875	0.0230574	0.0207276	0.122348	0.118056
chr5	131545060	131545160	2718267	0	-	0.31	(0.28,0.32]	chr5	255596	122	INTRON	INTRON	RAPGEF6	ENSG00000158987.22	ENST00000509018.6:ENST00000507093.5:ENST00000296859.10:ENST00000627212.2:ENST00000308008.10:ENST00000515170.5:ENST00000510071.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	32	2	4.33863	4.46369	4.58875	0.0230574	0.0207276	0.122348	0.118056
chr5	179584100	179584199	2560116	0	+	0.292929	(0.28,0.32]	chr5	244747	27	INTRON	INTRON	RUFY1	ENSG00000176783.15	ENST00000319449.9:ENST00000393448.6:ENST00000393438.6:ENST00000437570.6:ENST00000508609.5:ENST00000514238.2:ENST00000502434.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	32	2	4.33863	4.46369	4.58875	0.0230574	0.0207276	0.122348	0.118056
chr7	92664133	92664233	3571530	0	-	0.29	(0.28,0.32]	chr7	332790	407	INTRON	INTRON	CDK6	ENSG00000105810.10	ENST00000424848.3:ENST00000265734.8	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.33863	4.46369	4.58875	0.0230574	0.0207276	0.122348	0.118056
chr15	75934447	75934547	6065976	0	+	0.31	(0.28,0.32]	chr15	577669	8	UTR3	UTR3:EXON_MRNA	FBXO22	ENSG00000167196.14	ENST00000308275.8	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	3.88145	4.463620000000001	5.04579	0.0561985	0.00714672	0.18407	0.0723634
chr10	63136083	63136182	4436008	0	+	0.333333	(0.32,0.35]	chr10	409213	22	INTRON	INTRON	NRBF2	ENSG00000148572.16	ENST00000435510.6:ENST00000277746.11	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.16186	4.4634350000000005	4.76501	0.026079	0.0114287	0.133676	0.0886611
chr10	110073617	110073717	4519050	0	+	0.33	(0.32,0.35]	chr10	416765	566	INTRON	INTRON	ADD3	ENSG00000148700.15	ENST00000468251.5:ENST00000360162.7:ENST00000277900.12:ENST00000356080.9:ENST00000484622.5:ENST00000487085.5:ENST00000459738.5:ENST00000497125.5:ENST00000495661.5:ENST00000475954.5:ENST00000496517.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	32	2	4.16186	4.4634350000000005	4.76501	0.026079	0.0114287	0.133676	0.0886611
chr2	10339473	10339573	691996	0	+	0.35	(0.32,0.35]	chr2	81133	89	INTRON	INTRON	HPCAL1	ENSG00000115756.13	ENST00000423674.5:ENST00000307845.8:ENST00000381765.7:ENST00000419810.6:ENST00000622018.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	32	2	4.16186	4.4634350000000005	4.76501	0.026079	0.0114287	0.133676	0.0886611
chr6	157069083	157069183	3010090	0	+	0.33	(0.32,0.35]	chr6	281150	173	INTRON	INTRON	ARID1B	ENSG00000049618.24	ENST00000346085.10:ENST00000636930.2:ENST00000647938.1:ENST00000350026.10:ENST00000674190.1:ENST00000414678.7:ENST00000319584.11:ENST00000452544.2:ENST00000637887.1:ENST00000635849.1:ENST00000637003.1:ENST00000637904.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	32	2	4.16186	4.4634350000000005	4.76501	0.026079	0.0114287	0.133676	0.0886611
chr7	152255815	152255915	3679476	0	-	0.33	(0.32,0.35]	chr7	341597	27	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682916.1:ENST00000682280.1:ENST00000680039.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	32	2	4.16186	4.4634350000000005	4.76501	0.026079	0.0114287	0.133676	0.0886611
chr3	177179198	177179297	1872266	0	-	0.434343	(0.408,0.44]	chr3	187438	79	INTRON	INTRON	TBL1XR1	ENSG00000177565.18	ENST00000457928.7:ENST00000430069.5:ENST00000673974.1:ENST00000352800.10:ENST00000422442.6:ENST00000428970.5:ENST00000424913.5:ENST00000437738.5:ENST00000431421.5:ENST00000635794.1:ENST00000630796.2:ENST00000450267.5:ENST00000630833.2:ENST00000431674.5:ENST00000422066.5:ENST00000443315.5:ENST00000627825.2:ENST00000427349.5:ENST00000413084.5:ENST00000637137.1:ENST00000491623.2:ENST00000637544.1:ENST00000636187.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	99	2	2.99147	4.463125	5.93478	2.05062e-4	7.42058e-5	0.0124557	0.00770735
chr1	16368415	16368515	35772	0	+	0.38	(0.378,0.408]	chr1	4352	4	SS5_PROX	SS5_PROX:INTRON	SZRD1	ENSG00000055070.17	ENST00000475078.1:ENST00000471507.5:ENST00000401089.3:ENST00000486763.5:ENST00000401088.9:ENST00000475554.5:ENST00000476423.5:ENST00000472351.5:ENST00000492354.1:ENST00000472461.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	30	2	4.31699	4.46235	4.60771	0.0250408	0.00567576	0.12011	0.0678837
chr1	172443598	172443695	586001	0	-	0.381443	(0.378,0.408]	chr1	70557	11	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	PIGC	ENSG00000135845.10	ENST00000484368.1:ENST00000367728.1:ENST00000344529.5:ENST00000478184.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	30	2	4.31699	4.46235	4.60771	0.0250408	0.00567576	0.12011	0.0678837
chr1	243070702	243070802	667061	0	-	0.38	(0.378,0.408]	chr1	79146	6	INTRON	INTRON	LINC01347	ENSG00000214837.8	ENST00000627498.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	30	2	4.31699	4.46235	4.60771	0.0250408	0.00567576	0.12011	0.0678837
chr14	103913284	103913382	5972381	0	-	0.408163	(0.378,0.408]	chr14	567708	7	UTR3	UTR3:EXON_MRNA:INTRON	ATP5MJ	ENSG00000156411.10	ENST00000286953.8:ENST00000554880.5:ENST00000555030.5:ENST00000414262.6:ENST00000553430.5:ENST00000557040.5:ENST00000554287.1:ENST00000553449.1:ENST00000554089.5:ENST00000554713.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	30	2	4.31699	4.46235	4.60771	0.0250408	0.00567576	0.12011	0.0678837
chr6	42620951	42621051	2865640	0	+	0.39	(0.378,0.408]	chr6	271081	7	INTRON	INTRON	UBR2	ENSG00000024048.11	ENST00000372899.6:ENST00000372901.2	protein_coding	protein_coding	protein_coding	protein_coding	0	30	2	4.31699	4.46235	4.60771	0.0250408	0.00567576	0.12011	0.0678837
chr7	73547410	73547509	3555221	0	-	0.383838	(0.378,0.408]	chr7	330846	34	INTRON	INTRON	BCL7B	ENSG00000106635.8	ENST00000223368.7:ENST00000411832.5:ENST00000482231.5:ENST00000454871.5:ENST00000463858.5:ENST00000448175.5:ENST00000455335.2:ENST00000464288.5:ENST00000416906.2:ENST00000493592.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	30	2	4.31699	4.46235	4.60771	0.0250408	0.00567576	0.12011	0.0678837
chr7	96240714	96240814	3575441	0	-	0.38	(0.378,0.408]	chr7	333065	54	INTRON	INTRON	SLC25A13	ENSG00000004864.14	ENST00000265631.10:ENST00000416240.6:ENST00000472162.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	30	2	4.31699	4.46235	4.60771	0.0250408	0.00567576	0.12011	0.0678837
chr7	156707148	156707248	3686131	0	-	0.38	(0.378,0.408]	chr7	341983	186	INTRON	INTRON	LMBR1	ENSG00000105983.23	ENST00000353442.10:ENST00000448926.5:ENST00000415428.5:ENST00000454132.5:ENST00000434503.5:ENST00000461603.5:ENST00000486837.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	30	2	4.31699	4.46235	4.60771	0.0250408	0.00567576	0.12011	0.0678837
chrX	135533668	135533768	7725652	0	+	0.4	(0.378,0.408]	chrX	790370	120	INTRON	INTRON	INTS6L	ENSG00000165359.16	ENST00000370752.4:ENST00000481908.5:ENST00000639893.2:ENST00000493637.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	30	2	4.31699	4.46235	4.60771	0.0250408	0.00567576	0.12011	0.0678837
chr3	32487937	32488036	1649502	0	-	0.373737	(0.35,0.378]	chr3	169086	1	CDS	CDS:EXON_MRNA	CMTM6	ENSG00000091317.8	ENST00000205636.4:ENST00000478886.1:ENST00000495177.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	69	2	4.00097	4.46226	4.92355	0.00573514	8.64759e-5	0.0657377	0.00783027
chr7	74190806	74190903	3332395	0	+	0.412371	(0.408,0.44]	chr7	310054	1	PRIMIRNA	PRIMIRNA:INTRON	EIF4H:MIR590	ENSG00000106682.16:ENSG00000207741.1	ENST00000678438.1:ENST00000677998.1:ENST00000495187.2:ENST00000265753.13:ENST00000353999.6:ENST00000677570.1:ENST00000677681.1:ENST00000678815.1:ENST00000679266.1:ENST00000679287.1:ENST00000678341.1:ENST00000385008.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:primary_miRNA	2	82	2	3.12458	4.462104999999999	5.79963	4.61817e-4	1.39468e-4	0.0194611	0.0107072
chr1	35314669	35314769	68748	0	+	0.34	(0.32,0.35]	chr1	8723	183	INTRON	INTRON	ZMYM4	ENSG00000146463.12	ENST00000314607.11:ENST00000441447.1	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.36755	4.46208	4.55661	0.0300552	0.00927858	0.129138	0.0855292
chr1	89594616	89594714	158110	0	+	0.326531	(0.32,0.35]	chr1	17219	17	UTR3	UTR3:EXON_MRNA	LRRC8B	ENSG00000197147.15	ENST00000330947.7:ENST00000640258.1:ENST00000639264.1	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.36755	4.46208	4.55661	0.0300552	0.00927858	0.129138	0.0855292
chr1	167636495	167636595	247019	0	+	0.33	(0.32,0.35]	chr1	29419	23	INTRON	INTRON	RCSD1	ENSG00000198771.11	ENST00000537350.5:ENST00000361496.3:ENST00000367854.8:ENST00000475127.5:ENST00000472038.1:ENST00000461790.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	31	2	4.36755	4.46208	4.55661	0.0300552	0.00927858	0.129138	0.0855292
chr1	179211150	179211250	592894	0	-	0.33	(0.32,0.35]	chr1	71074	682	INTRON	INTRON	ABL2	ENSG00000143322.21	ENST00000502732.6:ENST00000367623.8:ENST00000507173.5:ENST00000511413.5:ENST00000668691.1:ENST00000392043.4:ENST00000660584.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	31	2	4.36755	4.46208	4.55661	0.0300552	0.00927858	0.129138	0.0855292
chr13	50469190	50469290	5494877	0	+	0.33	(0.32,0.35]	chr13	526164	107	INTRON	INTRON	DLEU1	ENSG00000176124.15	ENST00000467721.5:ENST00000468522.5:ENST00000490577.5:ENST00000491341.5:ENST00000491615.5:ENST00000463474.7:ENST00000468168.5:ENST00000476738.5:ENST00000461527.7:ENST00000485007.5:ENST00000475913.5:ENST00000470726.7:ENST00000479420.5:ENST00000474630.6:ENST00000491482.5:ENST00000647700.1:ENST00000484869.6:ENST00000469095.6:ENST00000462427.2:ENST00000470593.5:ENST00000472136.5:ENST00000498557.5:ENST00000460525.6	lncRNA	lncRNA	lncRNA	lncRNA	0	31	2	4.36755	4.46208	4.55661	0.0300552	0.00927858	0.129138	0.0855292
chr14	74785017	74785117	5788997	0	+	0.34	(0.32,0.35]	chr14	548446	23	INTRON	INTRON	YLPM1	ENSG00000119596.18	ENST00000325680.12:ENST00000552421.5:ENST00000549293.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	31	2	4.36755	4.46208	4.55661	0.0300552	0.00927858	0.129138	0.0855292
chr15	72778476	72778575	6220357	0	-	0.343434	(0.32,0.35]	chr15	593854	30	INTRON	INTRON	ADPGK	ENSG00000159322.18	ENST00000456471.3:ENST00000311669.12:ENST00000569534.5:ENST00000567941.5:ENST00000563907.5:ENST00000569517.5:ENST00000567733.1:ENST00000565814.1:ENST00000569058.1:ENST00000562286.1:ENST00000562823.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	31	2	4.36755	4.46208	4.55661	0.0300552	0.00927858	0.129138	0.0855292
chr19	21450859	21450958	7158712	0	-	0.323232	(0.32,0.35]	chr19	723691	11	INTRON	INTRON	ENSG00000268119	ENSG00000268119.7	ENST00000596705.5:ENST00000597444.6	lncRNA	lncRNA	lncRNA	lncRNA	0	31	2	4.36755	4.46208	4.55661	0.0300552	0.00927858	0.129138	0.0855292
chr2	44418520	44418620	765905	0	+	0.35	(0.32,0.35]	chr2	86775	175	INTRON	INTRON	CAMKMT	ENSG00000143919.15	ENST00000378494.8:ENST00000402247.5:ENST00000407131.5:ENST00000403853.7:ENST00000428993.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	31	2	4.36755	4.46208	4.55661	0.0300552	0.00927858	0.129138	0.0855292
chr2	151423042	151423132	893340	0	+	0.344444	(0.32,0.35]	chr2	98904	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RIF1	ENSG00000080345.18	ENST00000453091.6:ENST00000428287.6:ENST00000444746.7:ENST00000243326.9:ENST00000414861.6:ENST00000430328.6:ENST00000498041.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	31	2	4.36755	4.46208	4.55661	0.0300552	0.00927858	0.129138	0.0855292
chr21	37502215	37502314	7407596	0	+	0.323232	(0.32,0.35]	chr21	754945	10	EXON_MRNA	EXON_MRNA:INTRON	DYRK1A	ENSG00000157540.22	ENST00000646523.1:ENST00000647425.1:ENST00000647188.2:ENST00000647504.1:ENST00000644942.1:ENST00000338785.8:ENST00000643624.1:ENST00000398960.7:ENST00000646548.1:ENST00000645424.1:ENST00000643854.1:ENST00000642309.1:ENST00000645774.1:ENST00000398956.2:ENST00000643808.1:ENST00000644367.1:ENST00000646224.1:ENST00000646351.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	31	2	4.36755	4.46208	4.55661	0.0300552	0.00927858	0.129138	0.0855292
chr3	49270880	49270980	1692781	0	-	0.34	(0.32,0.35]	chr3	173500	24	UTR3	UTR3:EXON_MRNA	C3orf62	ENSG00000188315.8	ENST00000343010.8:ENST00000479673.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	31	2	4.36755	4.46208	4.55661	0.0300552	0.00927858	0.129138	0.0855292
chr3	121543932	121544030	1798443	0	-	0.336735	(0.32,0.35]	chr3	180585	21	INTRON	INTRON	POLQ	ENSG00000051341.15	ENST00000264233.6	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.36755	4.46208	4.55661	0.0300552	0.00927858	0.129138	0.0855292
chr5	69657960	69658060	2637313	0	-	0.35	(0.32,0.35]	chr5	250516	115	INTRON	INTRON	GUSBP3	ENSG00000253203.6	ENST00000513408.6:ENST00000509348.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	31	2	4.36755	4.46208	4.55661	0.0300552	0.00927858	0.129138	0.0855292
chr6	45258631	45258731	3102793	0	-	0.35	(0.32,0.35]	chr6	290480	71	INTRON	INTRON	SUPT3H	ENSG00000196284.17	ENST00000475057.5:ENST00000371459.6:ENST00000371460.5:ENST00000459689.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	31	2	4.36755	4.46208	4.55661	0.0300552	0.00927858	0.129138	0.0855292
chr7	101859346	101859446	3366782	0	+	0.35	(0.32,0.35]	chr7	315215	400	INTRON	INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000497815.5:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000607092.1:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000558469.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	31	2	4.36755	4.46208	4.55661	0.0300552	0.00927858	0.129138	0.0855292
chr17	56866079	56866179	6631976	0	+	0.38	(0.378,0.408]	chr17	647776	34	UTR3	UTR3:EXON_MRNA	DGKE	ENSG00000153933.10	ENST00000284061.8	protein_coding	protein_coding	protein_coding	protein_coding	0	30	2	4.42349	4.462025000000001	4.50056	0.015974	0.00992961	0.101453	0.0877296
chr2	68238205	68238305	1146381	0	-	0.39	(0.378,0.408]	chr2	122396	207	INTRON	INTRON	PPP3R1	ENSG00000221823.11	ENST00000234310.8:ENST00000409752.5:ENST00000409377.1	protein_coding	protein_coding	protein_coding	protein_coding	0	30	2	4.42349	4.462025000000001	4.50056	0.015974	0.00992961	0.101453	0.0877296
chr20	41566049	41566149	7344021	0	-	0.39	(0.378,0.408]	chr20	748566	15	INTRON	INTRON	CHD6	ENSG00000124177.16	ENST00000373233.8:ENST00000373222.3:ENST00000482596.1:ENST00000440647.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	30	2	4.42349	4.462025000000001	4.50056	0.015974	0.00992961	0.101453	0.0877296
chr3	48065587	48065687	1687267	0	-	0.4	(0.378,0.408]	chr3	172280	493	INTRON	INTRON	MAP4	ENSG00000047849.22	ENST00000395734.7:ENST00000426837.6:ENST00000360240.10:ENST00000423088.5:ENST00000439356.2:ENST00000468075.2	protein_coding	protein_coding	protein_coding	protein_coding	0	30	2	4.42349	4.462025000000001	4.50056	0.015974	0.00992961	0.101453	0.0877296
chr4	159264481	159264581	2075123	0	+	0.4	(0.378,0.408]	chr4	205218	203	INTRON	INTRON	RAPGEF2	ENSG00000109756.10	ENST00000644474.1:ENST00000691494.1:ENST00000505478.5:ENST00000504604.5:ENST00000644902.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	30	2	4.42349	4.462025000000001	4.50056	0.015974	0.00992961	0.101453	0.0877296
chr6	155297604	155297697	3251546	0	-	0.387097	(0.378,0.408]	chr6	302113	1	INTRON	INTRON	TFB1M	ENSG00000029639.11	ENST00000367166.5:ENST00000470239.1:ENST00000489874.5:ENST00000487586.5:ENST00000475849.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	30	2	4.42349	4.462025000000001	4.50056	0.015974	0.00992961	0.101453	0.0877296
chr7	77545797	77545897	3342098	0	+	0.38	(0.378,0.408]	chr7	311310	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	PTPN12	ENSG00000127947.16	ENST00000248594.11:ENST00000460731.5:ENST00000523952.5:ENST00000433369.6:ENST00000415482.6:ENST00000435495.6:ENST00000418110.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	30	2	4.42349	4.462025000000001	4.50056	0.015974	0.00992961	0.101453	0.0877296
chr1	32659660	32659759	65915	0	+	0.323232	(0.32,0.35]	chr1	8422	17	INTRON	INTRON	RBBP4	ENSG00000162521.19	ENST00000414241.7:ENST00000527118.5:ENST00000373493.10:ENST00000401893.7:ENST00000524393.5:ENST00000492348.6:ENST00000526193.5:ENST00000373485.5:ENST00000477563.6:ENST00000458695.6:ENST00000445722.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	31	2	4.45629	4.461935	4.46758	0.0246089	0.0119306	0.12011	0.0962115
chr1	39129992	39130092	75136	0	+	0.35	(0.32,0.35]	chr1	9693	239	INTRON	INTRON	MACF1	ENSG00000127603.32	ENST00000361689.7:ENST00000689911.1:ENST00000567887.5:ENST00000372915.8:ENST00000472385.2:ENST00000693209.1:ENST00000524432.5:ENST00000467673.5:ENST00000688212.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	31	2	4.45629	4.461935	4.46758	0.0246089	0.0119306	0.12011	0.0962115
chr1	150009447	150009547	550391	0	-	0.34	(0.32,0.35]	chr1	64628	315	INTRON	INTRON	OTUD7B	ENSG00000264522.6	ENST00000581312.6:ENST00000417191.2	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.45629	4.461935	4.46758	0.0246089	0.0119306	0.12011	0.0962115
chr19	4947411	4947511	7003261	0	+	0.34	(0.32,0.35]	chr19	694766	2	SS5_PROX	SS5_PROX:INTRON	UHRF1	ENSG00000276043.5	ENST00000612630.4:ENST00000620565.4:ENST00000624301.3:ENST00000613817.4:ENST00000650932.1:ENST00000615884.4:ENST00000622802.4:ENST00000616255.1	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.45629	4.461935	4.46758	0.0246089	0.0119306	0.12011	0.0962115
chr21	43682778	43682878	7413002	0	+	0.35	(0.32,0.35]	chr21	755444	1	SS3_PROX	SS3_PROX:INTRON	RRP1B	ENSG00000160208.13	ENST00000340648.6	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.45629	4.461935	4.46758	0.0246089	0.0119306	0.12011	0.0962115
chr7	102371445	102371545	3371149	0	+	0.33	(0.32,0.35]	chr7	315430	50	INTRON	INTRON	PRKRIP1:ENSG00000239969	ENSG00000128563.13:ENSG00000239969.6	ENST00000477886.5:ENST00000469763.5:ENST00000482549.5:ENST00000496391.5:ENST00000484974.5:ENST00000492837.1:ENST00000482465.5	protein_coding	protein_coding	protein_coding:transcribed_unprocessed_pseudogene	protein_coding:processed_transcript	0	31	2	4.45629	4.461935	4.46758	0.0246089	0.0119306	0.12011	0.0962115
chr7	152259115	152259215	3679509	0	-	0.33	(0.32,0.35]	chr7	341597	60	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682916.1:ENST00000682280.1:ENST00000680039.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	31	2	4.45629	4.461935	4.46758	0.0246089	0.0119306	0.12011	0.0962115
chrX	40719385	40719484	7806617	0	-	0.333333	(0.32,0.35]	chrX	796012	43	INTRON	INTRON	MED14	ENSG00000180182.11	ENST00000324817.6:ENST00000482034.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	31	2	4.45629	4.461935	4.46758	0.0246089	0.0119306	0.12011	0.0962115
chr14	55052501	55052601	5725378	0	+	0.38	(0.378,0.408]	chr14	543372	3	INTRON	INTRON	MAPK1IP1L	ENSG00000168175.15	ENST00000395468.9:ENST00000554364.1:ENST00000622254.1:ENST00000556515.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	68	2	3.10274	4.461855	5.82097	0.00586642	3.45471e-5	0.0668095	0.00467863
chr11	73829678	73829777	4825592	0	+	0.363636	(0.35,0.378]	chr11	450328	35	INTRON	INTRON	MRPL48	ENSG00000175581.14	ENST00000508278.6:ENST00000310614.12:ENST00000540162.5:ENST00000544140.5:ENST00000544819.5:ENST00000497094.6:ENST00000411840.6:ENST00000398483.7:ENST00000535277.5:ENST00000542303.5:ENST00000537007.5:ENST00000543058.1:ENST00000543374.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	94	2	2.76353	4.4612799999999995	6.15903	0.00343059	7.41293e-6	0.0517761	0.00193636
chrX	123986980	123987080	7717005	0	+	0.42	(0.408,0.44]	chrX	789462	232	INTRON	INTRON	STAG2	ENSG00000101972.20	ENST00000394477.5:ENST00000218089.13:ENST00000455404.5:ENST00000483575.5:ENST00000687810.1:ENST00000687071.1:ENST00000469481.1:ENST00000458700.5:ENST00000371160.5:ENST00000435103.5:ENST00000687852.1:ENST00000371145.8:ENST00000692982.1:ENST00000371157.7:ENST00000691035.1:ENST00000686802.1:ENST00000691383.1:ENST00000686127.1:ENST00000371144.7:ENST00000458176.5:ENST00000466748.5:ENST00000471107.1:ENST00000428941.5:ENST00000435215.5:ENST00000394478.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	66	2	3.28852	4.4612300000000005	5.63394	0.00287185	7.78928e-5	0.0474836	0.00735438
chr10	35367059	35367159	4424808	0	+	0.39	(0.378,0.408]	chr10	407899	295	INTRON	INTRON	CCNY	ENSG00000108100.18	ENST00000374706.5:ENST00000490012.6:ENST00000493157.6:ENST00000374704.8:ENST00000265375.13:ENST00000339497.7:ENST00000492478.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	140	2	4.15483	4.46123	4.76763	6.54278e-5	6.94535e-7	0.00715707	4.60891e-4
chr18	46812332	46812432	6965662	0	-	0.33	(0.32,0.35]	chr18	689435	93	UTR3	UTR3:EXON_MRNA	PIAS2	ENSG00000078043.16	ENST00000585916.6:ENST00000398654.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	67	2	3.49869	4.46087	5.42305	0.00149027	0.00108004	0.035	0.0300133
chr5	112992422	112992496	2453540	0	+	0.337838	(0.32,0.35]	chr5	235084	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DCP2	ENSG00000172795.17	ENST00000515408.5:ENST00000513585.6:ENST00000502635.2:ENST00000389063.3:ENST00000674880.1:ENST00000512751.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	67	2	3.49869	4.46087	5.42305	0.00149027	0.00108004	0.035	0.0300133
chr5	138031681	138031781	2730792	0	-	0.33	(0.32,0.35]	chr5	257016	101	INTRON	INTRON	FAM13B	ENSG00000031003.11	ENST00000689681.1:ENST00000033079.7:ENST00000425075.6:ENST00000420893.6:ENST00000514310.5:ENST00000502471.5:ENST00000509596.5:ENST00000508403.5:ENST00000505961.1:ENST00000510804.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	67	2	3.3721	4.46077	5.54944	0.00182912	9.42646e-4	0.0396683	0.0280811
chr1	227257730	227257829	651112	0	-	0.323232	(0.32,0.35]	chr1	77108	32	INTRON	INTRON	CDC42BPA	ENSG00000143776.20	ENST00000366766.8:ENST00000366769.7:ENST00000334218.9:ENST00000366767.7:ENST00000366764.8:ENST00000478573.6:ENST00000682551.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	74	2	3.4862	4.4604	5.4346	0.001711	4.09682e-4	0.037419	0.0181306
chr1	52871047	52871146	105196	0	+	0.333333	(0.32,0.35]	chr1	13760	29	INTRON	INTRON	ZYG11A	ENSG00000203995.10	ENST00000371532.5:ENST00000612017.4:ENST00000371528.2	protein_coding	protein_coding	protein_coding	protein_coding	2	90	2	2.89475	4.460395	6.02604	0.00160352	1.37226e-4	0.0367961	0.0106749
chr22	19406080	19406180	7554164	0	-	0.35	(0.32,0.35]	chr22	772297	2	SS3_PROX	SS3_PROX:INTRON	HIRA:C22orf39	ENSG00000100084.14:ENSG00000242259.9	ENST00000263208.5:ENST00000340170.8:ENST00000509549.5:ENST00000464189.5:ENST00000452818.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	73	2	3.07935	4.46031	5.84127	0.00724137	6.29724e-5	0.0729826	0.00658818
chr15	66682701	66682800	6051790	0	+	0.575758	(0.57,1]	chr15	576233	139	INTRON	INTRON	LINC01169	ENSG00000259471.1	ENST00000558797.1	lncRNA	lncRNA	lncRNA	lncRNA	1	42	2	3.40333	4.459775	5.51622	9.20604e-4	1.33983e-5	0.0278392	0.00288846
chr2	86135487	86135582	822690	0	+	0.315789	(0.28,0.32]	chr2	91840	1	INTRON	INTRON	PTCD3	ENSG00000132300.19	ENST00000254630.12:ENST00000487043.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	131	2	2.70888	4.459485	6.21009	4.99158e-4	1.11538e-4	0.020217099999999998	0.00945289
chr1	174251852	174251943	258038	0	+	0.296703	(0.28,0.32]	chr1	30767	9	INTRON	INTRON	RABGAP1L	ENSG00000152061.24	ENST00000357444.10:ENST00000251507.8:ENST00000681986.1:ENST00000457696.1	protein_coding	protein_coding	protein_coding	protein_coding	2	96	2	2.70831	4.4592	6.21009	0.00378444	1.11538e-4	0.0562562	0.00945289
chr7	105325665	105325765	3603273	0	-	0.48	(0.476,0.515]	chr7	336161	187	INTRON	INTRON	SRPK2	ENSG00000135250.17	ENST00000393651.8:ENST00000482897.5:ENST00000460391.5:ENST00000462282.5:ENST00000465112.5:ENST00000482862.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	134	2	4.45533	4.4589300000000005	4.46253	9.54933e-6	5.15266e-6	0.00237264	0.00155518
chr1	63427732	63427832	133086	0	+	0.41	(0.408,0.44]	chr1	15111	79	INTRON	INTRON	ALG6	ENSG00000088035.18	ENST00000647818.1:ENST00000603108.6:ENST00000648964.1:ENST00000263440.6:ENST00000650494.1:ENST00000649570.1:ENST00000465969.5:ENST00000462390.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	66	2	3.20034	4.458755	5.71717	0.00398025	5.09043e-5	0.0549214	0.00585477
chr5	66023805	66023864	2371830	0	+	0.423729	(0.408,0.44]	chr5	228534	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ERBIN	ENSG00000112851.15	ENST00000380943.6:ENST00000416865.6:ENST00000380935.5:ENST00000284037.10:ENST00000380938.6:ENST00000511297.5:ENST00000506030.5:ENST00000508515.1:ENST00000507128.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	66	2	3.20034	4.458755	5.71717	0.00398025	5.09043e-5	0.0549214	0.00585477
chr10	7331944	7332044	4552142	0	-	0.41	(0.408,0.44]	chr10	420230	456	INTRON	INTRON	SFMBT2	ENSG00000198879.13	ENST00000397167.6:ENST00000361972.8:ENST00000684547.1:ENST00000683762.1:ENST00000673876.1:ENST00000682896.1:ENST00000379713.8:ENST00000682101.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	82	2	2.9826	4.45869	5.93478	9.23082e-4	7.42058e-5	0.0278392	0.00770735
chr16	16500918	16501018	6310871	0	+	0.47	(0.44,0.476]	chr16	604098	9	INTRON	INTRON	ENSG00000260126	ENSG00000260126.2	ENST00000567465.2	lncRNA	lncRNA	lncRNA	lncRNA	4	129	2	2.94162	4.45834	5.97506	1.46942e-4	1.26309e-5	0.0110957	0.00264613
chr8	81720829	81720908	3979569	0	-	0.443038	(0.44,0.476]	chr8	364649	2	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	ZFAND1	ENSG00000104231.11	ENST00000220669.10:ENST00000523096.5:ENST00000522520.5:ENST00000519464.5:ENST00000521895.5:ENST00000521287.5:ENST00000523431.5:ENST00000520635.5:ENST00000519523.5:ENST00000517588.5:ENST00000520604.5:ENST00000523361.5:ENST00000521742.5:ENST00000517450.5:ENST00000518419.5:ENST00000520076.5:ENST00000524339.5:ENST00000517353.5:ENST00000519820.5:ENST00000521885.5:ENST00000520941.5:ENST00000523012.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	62	2	3.71727	4.458035000000001	5.1988	0.00151532	3.2089e-4	0.0352794	0.0159645
chr1	77674685	77674785	493384	0	-	0.55	(0.515,0.57]	chr1	58315	327	INTRON	INTRON	ZZZ3	ENSG00000036549.13	ENST00000370801.8:ENST00000370798.5:ENST00000433749.5:ENST00000414381.5:ENST00000463166.5:ENST00000469944.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	28	2	4.41498	4.458	4.50102	0.0106866	0.00510768	0.0861859	0.0646039
chr1	156753915	156754014	231799	0	+	0.545455	(0.515,0.57]	chr1	27476	28	INTRON	INTRON	PRCC	ENSG00000143294.15	ENST00000491853.5	protein_coding	processed_transcript	protein_coding	processed_transcript	0	28	2	4.41498	4.458	4.50102	0.0106866	0.00510768	0.0861859	0.0646039
chr16	72755768	72755868	6388341	0	+	0.52	(0.515,0.57]	chr16	614360	82	INTRON	INTRON	ENSG00000259768	ENSG00000259768.7	ENST00000668995.1:ENST00000689200.1:ENST00000687589.1:ENST00000692742.1:ENST00000692937.1:ENST00000653037.1:ENST00000686426.1:ENST00000563328.4	lncRNA	lncRNA	lncRNA	lncRNA	0	28	2	4.41498	4.458	4.50102	0.0106866	0.00510768	0.0861859	0.0646039
chr17	51259520	51259613	6797867	0	-	0.55914	(0.515,0.57]	chr17	671130	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MBTD1	ENSG00000011258.16	ENST00000586178.6:ENST00000405860.7:ENST00000591270.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	28	2	4.41498	4.458	4.50102	0.0106866	0.00510768	0.0861859	0.0646039
chr19	337557	337655	7109545	0	-	0.55102	(0.515,0.57]	chr19	713828	10	INTRON	INTRON	MIER2	ENSG00000105556.12	ENST00000264819.7:ENST00000635755.1:ENST00000586994.7:ENST00000592722.1:ENST00000587966.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	28	2	4.41498	4.458	4.50102	0.0106866	0.00510768	0.0861859	0.0646039
chr11	70271503	70271587	4820416	0	+	0.357143	(0.35,0.378]	chr11	449373	2	SS5_PROX	SS5_PROX:INTRON	PPFIA1	ENSG00000131626.19	ENST00000253925.12:ENST00000389547.7:ENST00000532504.5:ENST00000530746.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	297	2	3.79979	4.45751	5.11523	3.25784e-7	1.15194e-7	3.12285e-4	1.51249e-4
chr4	39916160	39916256	2131581	0	-	0.458333	(0.44,0.476]	chr4	210206	21	INTRON	INTRON	PDS5A	ENSG00000121892.15	ENST00000303538.13:ENST00000503396.5:ENST00000513798.1	protein_coding	protein_coding	protein_coding	protein_coding	3	98	2	2.90991	4.457325	6.00474	3.20441e-4	4.73674e-5	0.0159645	0.00593269
chr3	183718692	183718792	1580501	0	+	0.51	(0.476,0.515]	chr3	163037	1	SS5_PROX	SS5_PROX:INTRON	YEATS2	ENSG00000163872.16	ENST00000305135.10	protein_coding	protein_coding	protein_coding	protein_coding	0	30	2	4.13586	4.45721	4.77856	0.031846	0.00305743	0.13151	0.0509893
chr21	44046896	44046996	7415380	0	+	0.61	(0.57,1]	chr21	755795	86	INTRON	INTRON	TRAPPC10	ENSG00000160218.13	ENST00000291574.9:ENST00000380221.7:ENST00000422875.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	23	2	4.31277	4.457190000000001	4.60161	0.00346264	0.00142229	0.0539802	0.0340865
chr4	1895682	1895780	1910817	0	+	0.571429	(0.57,1]	chr4	191727	14	INTRON	INTRON	NSD2	ENSG00000109685.19	ENST00000508803.6:ENST00000507820.5:ENST00000508355.5:ENST00000514045.5:ENST00000515806.1:ENST00000398261.6:ENST00000382891.9:ENST00000353275.9:ENST00000382892.6:ENST00000382895.7:ENST00000312087.10:ENST00000420906.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	23	2	4.31277	4.457190000000001	4.60161	0.00346264	0.00142229	0.0539802	0.0340865
chr7	132892683	132892783	3643989	0	-	0.59	(0.57,1]	chr7	338848	53	INTRON	INTRON	CHCHD3	ENSG00000106554.13	ENST00000262570.10:ENST00000448878.6:ENST00000496427.5:ENST00000423635.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	23	2	4.31277	4.457190000000001	4.60161	0.00346264	0.00142229	0.0539802	0.0340865
chr1	103538280	103538379	176068	0	+	0.343434	(0.32,0.35]	chr1	19092	4	INTRON	INTRON	RNPC3	ENSG00000185946.16	ENST00000524631.5:ENST00000423855.7:ENST00000533099.5:ENST00000527062.5:ENST00000533834.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	31	2	4.273	4.45673	4.64046	0.0368357	0.00724767	0.138959	0.0756327
chr12	19143245	19143345	5088406	0	+	0.35	(0.32,0.35]	chr12	480740	104	INTRON	INTRON	PLEKHA5	ENSG00000052126.15	ENST00000429027.7:ENST00000540972.5:ENST00000299275.10:ENST00000539256.5:ENST00000538714.5:ENST00000535357.5:ENST00000538034.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	31	2	4.273	4.45673	4.64046	0.0368357	0.00724767	0.138959	0.0756327
chr13	95214969	95215069	5639007	0	-	0.34	(0.32,0.35]	chr13	537151	38	INTRON	INTRON	ABCC4	ENSG00000125257.16	ENST00000645237.2:ENST00000643051.1:ENST00000643842.1:ENST00000646439.1:ENST00000643816.1:ENST00000536256.3:ENST00000643556.1:ENST00000629385.1:ENST00000642524.1:ENST00000645532.1:ENST00000644471.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	31	2	4.273	4.45673	4.64046	0.0368357	0.00724767	0.138959	0.0756327
chr17	47086146	47086246	6788502	0	-	0.33	(0.32,0.35]	chr17	669501	34	INTRON	INTRON	ENSG00000262879	ENSG00000262879.6	ENST00000668245.1:ENST00000573341.6:ENST00000572864.5:ENST00000576938.1:ENST00000574741.1	lncRNA	lncRNA	lncRNA	lncRNA	0	31	2	4.273	4.45673	4.64046	0.0368357	0.00724767	0.138959	0.0756327
chr4	144116653	144116753	2251828	0	-	0.34	(0.32,0.35]	chr4	220014	4	SS5_PROX	SS5_PROX:INTRON	GYPA	ENSG00000170180.22	ENST00000641688.3:ENST00000616983.4:ENST00000360771.8:ENST00000642295.1:ENST00000324022.14:ENST00000646447.1:ENST00000535709.6:ENST00000508337.1:ENST00000643254.1:ENST00000643148.1:ENST00000642738.1:ENST00000642713.1:ENST00000512064.5:ENST00000512789.5:ENST00000504786.5:ENST00000503627.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	31	2	4.273	4.45673	4.64046	0.0368357	0.00724767	0.138959	0.0756327
chr8	102264658	102264743	4011205	0	-	0.329412	(0.32,0.35]	chr8	366975	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	UBR5	ENSG00000104517.13	ENST00000520539.6:ENST00000220959.8:ENST00000521922.5:ENST00000518205.5	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.273	4.45673	4.64046	0.0368357	0.00724767	0.138959	0.0756327
chr9	88409306	88409406	4152255	0	+	0.34	(0.32,0.35]	chr9	378721	195	INTRON	INTRON	SPIN1	ENSG00000106723.17	ENST00000485804.5:ENST00000469017.6:ENST00000375859.4:ENST00000462844.5:ENST00000485565.6:ENST00000483785.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	31	2	4.273	4.45673	4.64046	0.0368357	0.00724767	0.138959	0.0756327
chrX	120611378	120611478	7713994	0	+	0.33	(0.32,0.35]	chrX	789354	3	SS5_PROX	SS5_PROX:INTRON	MCTS1	ENSG00000232119.8	ENST00000371317.10:ENST00000371315.3:ENST00000487133.1:ENST00000484481.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	31	2	4.273	4.45673	4.64046	0.0368357	0.00724767	0.138959	0.0756327
chr4	126709386	126709486	2237804	0	-	0.57	(0.515,0.57]	chr4	219029	107	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	1	59	2	3.25547	4.456424999999999	5.65738	0.00261721	3.32659e-5	0.0455413	0.00461719
chr1	31279576	31279676	413117	0	-	0.51	(0.476,0.515]	chr1	49792	77	INTRON	INTRON	SNRNP40	ENSG00000060688.13	ENST00000263694.9:ENST00000489853.1:ENST00000474025.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	30	2	4.21964	4.45642	4.6932	0.0167715	0.00753088	0.110511	0.074841
chr10	45861985	45862085	4607549	0	-	0.5	(0.476,0.515]	chr10	424439	67	INTRON	INTRON	PARGP1	ENSG00000239883.9	ENST00000440803.7:ENST00000610690.1	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript	0	30	2	4.21964	4.45642	4.6932	0.0167715	0.00753088	0.110511	0.074841
chr10	72410536	72410636	4644757	0	-	0.51	(0.476,0.515]	chr10	427379	21	INTRON	INTRON	MICU1	ENSG00000107745.20	ENST00000361114.10:ENST00000476605.7:ENST00000642044.1:ENST00000635239.1:ENST00000418483.6:ENST00000398763.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	30	2	4.21964	4.45642	4.6932	0.0167715	0.00753088	0.110511	0.074841
chr10	110936100	110936199	4521568	0	+	0.515152	(0.476,0.515]	chr10	417201	148	INTRON	INTRON	SHOC2	ENSG00000108061.13	ENST00000688928.1:ENST00000689997.1:ENST00000689300.1:ENST00000691441.1:ENST00000451838.2:ENST00000692776.1:ENST00000685613.1:ENST00000691903.1:ENST00000687592.1:ENST00000265277.10:ENST00000691151.1:ENST00000685059.1:ENST00000489390.1:ENST00000369452.9:ENST00000691369.1:ENST00000689118.1:ENST00000489783.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	30	2	4.21964	4.45642	4.6932	0.0167715	0.00753088	0.110511	0.074841
chr14	101983809	101983909	5820421	0	+	0.49	(0.476,0.515]	chr14	552006	2	SS5_PROX	SS5_PROX:INTRON	DYNC1H1	ENSG00000197102.14	ENST00000360184.10:ENST00000684561.1:ENST00000680313.1:ENST00000679720.1:ENST00000680715.1:ENST00000681283.1:ENST00000681822.1:ENST00000679910.1:ENST00000681574.1:ENST00000645039.2:ENST00000645149.2:ENST00000680200.1:ENST00000680120.1:ENST00000644881.2:ENST00000681066.1:ENST00000680423.1:ENST00000681536.1:ENST00000679486.1:ENST00000681010.1:ENST00000679629.1:ENST00000681123.1:ENST00000680874.1:ENST00000680137.1:ENST00000643508.2:ENST00000680808.1:ENST00000681311.1:ENST00000681859.1:ENST00000643684.1:ENST00000643958.2:ENST00000680001.1:ENST00000681668.1:ENST00000645114.2:ENST00000681751.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	30	2	4.21964	4.45642	4.6932	0.0167715	0.00753088	0.110511	0.074841
chr16	645125	645221	6273202	0	+	0.510417	(0.476,0.515]	chr16	598787	1	EXON_MRNA	EXON_MRNA:INTRON	MCRIP2	ENSG00000172366.20	ENST00000611328.4:ENST00000307650.9:ENST00000491999.5:ENST00000629534.2:ENST00000474840.5:ENST00000615744.4:ENST00000620462.4:ENST00000619674.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	30	2	4.21964	4.45642	4.6932	0.0167715	0.00753088	0.110511	0.074841
chr16	50247700	50247800	6348402	0	+	0.5	(0.476,0.515]	chr16	609379	11	INTRON	INTRON	ADCY7	ENSG00000121281.13	ENST00000564965.5:ENST00000564044.5	protein_coding	protein_coding	protein_coding	protein_coding	0	30	2	4.21964	4.45642	4.6932	0.0167715	0.00753088	0.110511	0.074841
chr17	78195846	78195944	6682034	0	+	0.510204	(0.476,0.515]	chr17	652698	27	INTRON	INTRON	AFMID	ENSG00000183077.16	ENST00000591256.5:ENST00000409257.10:ENST00000327898.9:ENST00000591952.5:ENST00000588800.5:ENST00000588199.5:ENST00000589107.5:ENST00000592988.5:ENST00000589256.5:ENST00000586542.5:ENST00000586731.1:ENST00000591538.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	30	2	4.21964	4.45642	4.6932	0.0167715	0.00753088	0.110511	0.074841
chr6	11117738	11117837	2812952	0	+	0.484848	(0.476,0.515]	chr6	264729	230	INTRON	INTRON	SMIM13	ENSG00000224531.6	ENST00000416247.4:ENST00000376935.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	30	2	4.21964	4.45642	4.6932	0.0167715	0.00753088	0.110511	0.074841
chr6	30314882	30314982	3076875	0	-	0.5	(0.476,0.515]	chr6	286152	4	SS3_PROX	SS3_PROX:INTRON	HCG18	ENSG00000231074.10	ENST00000665953.1:ENST00000670397.1:ENST00000659132.1:ENST00000659836.1:ENST00000669374.1:ENST00000653541.1:ENST00000670071.1:ENST00000666294.1:ENST00000657247.1:ENST00000654996.1:ENST00000653301.1:ENST00000658695.1:ENST00000664861.1:ENST00000668974.1:ENST00000654915.1:ENST00000660593.1:ENST00000687430.1:ENST00000656629.1:ENST00000602550.5:ENST00000687815.1:ENST00000449544.6:ENST00000426882.6:ENST00000438412.6:ENST00000602698.6:ENST00000454129.5:ENST00000444126.5:ENST00000602290.2:ENST00000412685.8:ENST00000602861.6:ENST00000454269.6:ENST00000686575.1:ENST00000687471.1:ENST00000691282.1:ENST00000413358.6:ENST00000602498.1	lncRNA	lncRNA	lncRNA	lncRNA	0	30	2	4.21964	4.45642	4.6932	0.0167715	0.00753088	0.110511	0.074841
chr1	10559974	10560074	23832	0	+	0.33	(0.32,0.35]	chr1	2518	233	INTRON	INTRON	PEX14	ENSG00000142655.13	ENST00000356607.9:ENST00000491661.2	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.37269	4.456285	4.53988	0.0202178	0.0154102	0.109913	0.108569
chr2	8957996	8958096	1063110	0	-	0.33	(0.32,0.35]	chr2	113376	1	SS5_PROX	SS5_PROX:INTRON	MBOAT2	ENSG00000143797.12	ENST00000305997.8:ENST00000486484.5:ENST00000477073.5:ENST00000474341.5:ENST00000462696.1:ENST00000460786.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	31	2	4.37269	4.456285	4.53988	0.0202178	0.0154102	0.109913	0.108569
chr2	166363800	166363900	1255711	0	-	0.34	(0.32,0.35]	chr2	133141	419	INTRON	INTRON	SCN9A	ENSG00000169432.19	ENST00000409672.5:ENST00000642356.2:ENST00000303354.11:ENST00000645907.1:ENST00000454569.6:ENST00000452182.2:ENST00000472119.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	31	2	4.37269	4.456285	4.53988	0.0202178	0.0154102	0.109913	0.108569
chr2	201131636	201131735	981686	0	+	0.343434	(0.32,0.35]	chr2	105380	11	INTRON	INTRON	CFLAR	ENSG00000003402.21	ENST00000443227.5:ENST00000309955.8:ENST00000341222.10:ENST00000341582.10:ENST00000342795.9:ENST00000395148.6:ENST00000441224.5:ENST00000423241.6:ENST00000439154.6:ENST00000417748.1:ENST00000440180.5:ENST00000461820.5:ENST00000457277.5:ENST00000461422.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	31	2	4.37269	4.456285	4.53988	0.0202178	0.0154102	0.109913	0.108569
chr21	46640658	46640757	7423724	0	+	0.343434	(0.32,0.35]	chr21	757179	33	INTRON	INTRON	PRMT2	ENSG00000160310.19	ENST00000451211.6:ENST00000458387.6:ENST00000397638.6:ENST00000291705.11:ENST00000397637.5:ENST00000334494.8:ENST00000355680.8:ENST00000397628.5:ENST00000440086.5	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.37269	4.456285	4.53988	0.0202178	0.0154102	0.109913	0.108569
chr6	35868409	35868509	3088280	0	-	0.35	(0.32,0.35]	chr6	288826	107	INTRON	INTRON	SRPK1	ENSG00000096063.16	ENST00000373825.7:ENST00000423325.6:ENST00000346162.10:ENST00000361690.7:ENST00000507292.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	31	2	4.37269	4.456285	4.53988	0.0202178	0.0154102	0.109913	0.108569
chr7	5053433	5053532	3271793	0	+	0.343434	(0.32,0.35]	chr7	304061	50	INTRON	INTRON	RBAK	ENSG00000146587.18	ENST00000353796.7:ENST00000396912.2	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.37269	4.456285	4.53988	0.0202178	0.0154102	0.109913	0.108569
chrX	9489900	9490000	7618902	0	+	0.34	(0.32,0.35]	chrX	779938	241	INTRON	INTRON	TBL1X	ENSG00000101849.18	ENST00000407597.7:ENST00000380961.5:ENST00000424279.6:ENST00000645353.2:ENST00000422314.5	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.37269	4.456285	4.53988	0.0202178	0.0154102	0.109913	0.108569
chrX	41111782	41111881	7644325	0	+	0.333333	(0.32,0.35]	chrX	782230	253	INTRON	INTRON	USP9X	ENSG00000124486.14	ENST00000324545.9:ENST00000378308.7	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.37269	4.456285	4.53988	0.0202178	0.0154102	0.109913	0.108569
chr12	100299772	100299871	5200845	0	+	0.353535	(0.35,0.378]	chr12	492141	12	INTRON	INTRON	SCYL2	ENSG00000136021.19	ENST00000549687.5:ENST00000360820.7:ENST00000548392.5:ENST00000635101.1	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.08816	4.455965	4.82377	0.046021	0.00325499	0.149888	0.0524329
chr16	74659739	74659837	6525732	0	-	0.367347	(0.35,0.378]	chr16	631913	73	INTRON	INTRON	RFWD3	ENSG00000168411.14	ENST00000361070.9:ENST00000571750.5:ENST00000572337.5	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.08816	4.455965	4.82377	0.046021	0.00325499	0.149888	0.0524329
chr19	49195045	49195144	7089427	0	+	0.373737	(0.35,0.378]	chr19	709827	39	INTRON	INTRON	TRPM4	ENSG00000130529.16	ENST00000598697.5:ENST00000252826.10:ENST00000595519.5:ENST00000427978.6:ENST00000598502.5:ENST00000596338.5:ENST00000595071.5:ENST00000595882.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	31	2	4.08816	4.455965	4.82377	0.046021	0.00325499	0.149888	0.0524329
chr2	58206781	58206878	1126401	0	-	0.350515	(0.35,0.378]	chr2	120929	3	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	FANCL	ENSG00000115392.13	ENST00000696400.1:ENST00000403295.8:ENST00000696492.1:ENST00000427708.7:ENST00000696314.1:ENST00000696315.1:ENST00000696454.1:ENST00000696508.1:ENST00000696548.1:ENST00000696542.1:ENST00000696432.1:ENST00000696319.1:ENST00000403676.6:ENST00000696433.1:ENST00000696434.1:ENST00000696499.1:ENST00000696564.1:ENST00000402135.8:ENST00000696546.1:ENST00000233741.9:ENST00000696316.1:ENST00000696378.1:ENST00000696435.1:ENST00000696493.1:ENST00000696543.1:ENST00000696544.1:ENST00000696545.1:ENST00000696565.1:ENST00000696620.1:ENST00000696621.1:ENST00000696635.1:ENST00000696364.1:ENST00000696634.1:ENST00000696317.1:ENST00000696622.1:ENST00000696467.1:ENST00000696547.1:ENST00000449070.6:ENST00000696305.1:ENST00000417361.2:ENST00000696338.1:ENST00000696361.1:ENST00000696318.1:ENST00000696371.1:ENST00000696409.1:ENST00000696410.1:ENST00000696455.1:ENST00000696468.1:ENST00000696527.1:ENST00000696567.1:ENST00000696324.1:ENST00000696566.1:ENST00000696623.1:ENST00000446381.6:ENST00000696469.1:ENST00000696624.1:ENST00000696411.1:ENST00000470506.2:ENST00000696358.1:ENST00000696373.1:ENST00000696394.1:ENST00000696320.1:ENST00000696395.1:ENST00000696341.1:ENST00000696340.1:ENST00000696374.1:ENST00000696396.1:ENST00000696342.1:ENST00000696325.1:ENST00000696399.1:ENST00000696398.1:ENST00000696306.1:ENST00000696397.1:ENST00000696360.1:ENST00000696344.1:ENST00000696343.1:ENST00000696637.1:ENST00000696362.1:ENST00000696528.1:ENST00000696497.1:ENST00000696326.1:ENST00000696625.1:ENST00000696510.1:ENST00000696438.1:ENST00000696496.1:ENST00000696509.1:ENST00000696569.1:ENST00000696457.1:ENST00000696458.1:ENST00000696473.1:ENST00000696495.1:ENST00000696415.1:ENST00000696472.1:ENST00000696494.1:ENST00000696459.1:ENST00000696498.1:ENST00000696416.1:ENST00000696530.1:ENST00000696460.1:ENST00000696570.1:ENST00000696531.1:ENST00000696307.1:ENST00000696345.1:ENST00000696377.1:ENST00000696417.1:ENST00000696594.1:ENST00000696595.1:ENST00000696379.1:ENST00000696346.1:ENST00000696380.1:ENST00000696347.1:ENST00000696461.1:ENST00000696596.1:ENST00000696549.1:ENST00000696597.1:ENST00000696550.1:ENST00000696598.1:ENST00000696321.1:ENST00000696476.1:ENST00000696477.1:ENST00000696511.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	31	2	4.08816	4.455965	4.82377	0.046021	0.00325499	0.149888	0.0524329
chr2	169707999	169708098	907207	0	+	0.363636	(0.35,0.378]	chr2	100116	64	INTRON	INTRON	KLHL23	ENSG00000213160.10	ENST00000498202.6:ENST00000272797.8:ENST00000602521.1	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.08816	4.455965	4.82377	0.046021	0.00325499	0.149888	0.0524329
chr3	5146948	5147048	1353822	0	+	0.37	(0.35,0.378]	chr3	142361	180	INTRON	INTRON	ARL8B	ENSG00000134108.14	ENST00000429403.5:ENST00000256496.8:ENST00000455168.5:ENST00000444332.1:ENST00000419534.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	31	2	4.08816	4.455965	4.82377	0.046021	0.00325499	0.149888	0.0524329
chr10	72730057	72730157	4450472	0	+	0.47	(0.44,0.476]	chr10	410752	138	INTRON	INTRON	MCU	ENSG00000156026.15	ENST00000373053.8:ENST00000357157.10:ENST00000604679.5:ENST00000604372.5:ENST00000603649.5:ENST00000605597.5:ENST00000536019.5:ENST00000604152.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	30	2	4.12843	4.45568	4.78293	0.0337192	0.00292033	0.134145	0.0494641
chr14	99450587	99450687	5966921	0	-	0.45	(0.44,0.476]	chr14	566915	363	INTRON	INTRON	SETD3	ENSG00000183576.13	ENST00000331768.10:ENST00000446066.5:ENST00000453764.5:ENST00000329331.7:ENST00000630307.2:ENST00000436070.6:ENST00000357563.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	30	2	4.12843	4.45568	4.78293	0.0337192	0.00292033	0.134145	0.0494641
chr16	89449797	89449897	6543194	0	-	0.46	(0.44,0.476]	chr16	634281	181	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	30	2	4.12843	4.45568	4.78293	0.0337192	0.00292033	0.134145	0.0494641
chr19	16440261	16440361	7149363	0	-	0.47	(0.44,0.476]	chr19	722325	20	INTRON	INTRON	EPS15L1	ENSG00000127527.14	ENST00000602022.5:ENST00000455140.7:ENST00000592031.5:ENST00000248070.10:ENST00000535753.6:ENST00000594975.5:ENST00000597937.5:ENST00000593760.5:ENST00000596037.5:ENST00000597559.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	30	2	4.12843	4.45568	4.78293	0.0337192	0.00292033	0.134145	0.0494641
chr6	33649501	33649600	2847561	0	+	0.454545	(0.44,0.476]	chr6	268791	86	INTRON	INTRON	ITPR3	ENSG00000096433.11	ENST00000374316.9:ENST00000605930.3	protein_coding	protein_coding	protein_coding	protein_coding	0	30	2	4.12843	4.45568	4.78293	0.0337192	0.00292033	0.134145	0.0494641
chrX	124621408	124621508	7881563	0	-	0.47	(0.44,0.476]	chrX	802733	555	INTRON	INTRON	TENM1	ENSG00000009694.13	ENST00000371130.7:ENST00000422452.2	protein_coding	protein_coding	protein_coding	protein_coding	0	30	2	4.12843	4.45568	4.78293	0.0337192	0.00292033	0.134145	0.0494641
chr10	17688373	17688473	4399713	0	+	0.26	[0,0.28]	chr10	406179	2	SS5_PROX	SS5_PROX:INTRON	STAM	ENSG00000136738.15	ENST00000377524.8:ENST00000377500.1:ENST00000445846.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	33	2	4.20106	4.455615	4.71017	0.0695895	0.0114708	0.184298	0.0956037
chr16	24553557	24553648	6327798	0	+	0.252747	[0,0.28]	chr16	605840	1	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	RBBP6	ENSG00000122257.20	ENST00000564314.5:ENST00000567686.5:ENST00000568015.5:ENST00000319715.10:ENST00000381039.7:ENST00000646282.1:ENST00000348022.6:ENST00000613729.1:ENST00000564726.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	33	2	4.20106	4.455615	4.71017	0.0695895	0.0114708	0.184298	0.0956037
chr17	38903975	38904074	6606750	0	+	0.272727	[0,0.28]	chr17	643214	49	INTRON	INTRON	LASP1	ENSG00000002834.18	ENST00000433206.6:ENST00000585841.5:ENST00000318008.11:ENST00000443937.7:ENST00000435347.7:ENST00000419929.1:ENST00000581485.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	33	2	4.20106	4.455615	4.71017	0.0695895	0.0114708	0.184298	0.0956037
chr21	44788794	44788894	7468601	0	-	0.27	[0,0.28]	chr21	761177	3	INTRON	INTRON	UBE2G2	ENSG00000184787.19	ENST00000345496.7:ENST00000497630.5:ENST00000477954.5:ENST00000491513.5:ENST00000330942.9:ENST00000478200.1:ENST00000497664.5:ENST00000462569.5:ENST00000490450.5:ENST00000496395.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	33	2	4.20106	4.455615	4.71017	0.0695895	0.0114708	0.184298	0.0956037
chr4	139318276	139318376	2049859	0	+	0.25	[0,0.28]	chr4	203286	157	INTRON	INTRON	NAA15	ENSG00000164134.13	ENST00000296543.10:ENST00000398947.1:ENST00000482087.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	33	2	4.20106	4.455615	4.71017	0.0695895	0.0114708	0.184298	0.0956037
chr8	100710614	100710710	4005470	0	-	0.333333	(0.32,0.35]	chr8	366598	5	INTRON	INTRON	PABPC1	ENSG00000070756.17	ENST00000677140.1:ENST00000677787.1:ENST00000678709.1:ENST00000676662.1:ENST00000677765.1:ENST00000677892.1:ENST00000522720.2:ENST00000520804.2:ENST00000521865.6:ENST00000677478.1:ENST00000677380.1:ENST00000520142.2:ENST00000677775.1:ENST00000678954.1:ENST00000676655.1:ENST00000676976.1:ENST00000678290.1:ENST00000318607.10:ENST00000679197.1:ENST00000519100.6:ENST00000519004.5:ENST00000522387.5:ENST00000523636.5:ENST00000522658.6:ENST00000678822.1:ENST00000523555.6:ENST00000610907.2:ENST00000517403.5:ENST00000519596.5:ENST00000519622.5:ENST00000517921.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	98	2	2.84076	4.45547	6.07018	0.0027933	1.93822e-5	0.0469265	0.00338472
chr7	135419857	135419957	3648057	0	-	0.44	(0.408,0.44]	chr7	339173	42	INTRON	INTRON	CNOT4	ENSG00000080802.20	ENST00000541284.6:ENST00000451834.5:ENST00000423368.6:ENST00000361528.8:ENST00000414802.5:ENST00000428680.6:ENST00000315544.6	protein_coding	protein_coding	protein_coding	protein_coding	1	62	2	3.71874	4.45538	5.19202	0.0016671	3.17998e-4	0.0369207	0.0159645
chr14	30997865	30997965	5857588	0	-	0.34	(0.32,0.35]	chr14	556508	335	INTRON	INTRON	STRN3	ENSG00000196792.12	ENST00000355683.9:ENST00000357479.10:ENST00000555358.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	123	2	2.64481	4.45534	6.26587	5.97546e-4	4.61806e-5	0.0222617	0.00588447
chr12	122491832	122491925	5441900	0	-	0.397849	(0.378,0.408]	chr12	520509	4	INTRON	INTRON	ZCCHC8	ENSG00000033030.15	ENST00000672018.1:ENST00000633063.3:ENST00000543897.5:ENST00000536306.5:ENST00000536663.5:ENST00000540586.1	protein_coding	protein_coding	protein_coding	protein_coding	1	67	2	4.03294	4.45528	4.87762	0.00553849	6.52685e-5	0.0648867	0.00669119
chr10	15118543	15118642	4562214	0	-	0.262626	[0,0.28]	chr10	421080	52	INTRON	INTRON	NMT2	ENSG00000152465.18	ENST00000378165.9:ENST00000486786.1:ENST00000378150.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	33	2	4.28915	4.454995	4.62084	0.0319595	0.0313633	0.14477	0.13151
chr20	35357663	35357763	7334652	0	-	0.2	[0,0.28]	chr20	747146	100	INTRON	INTRON	UQCC1	ENSG00000101019.22	ENST00000374380.6:ENST00000374394.7:ENST00000374384.6:ENST00000359226.6:ENST00000349714.9:ENST00000457259.5:ENST00000374385.10:ENST00000453855.5:ENST00000397556.7:ENST00000424405.5:ENST00000443429.5:ENST00000438533.5:ENST00000397554.5:ENST00000491125.5:ENST00000491040.5:ENST00000397553.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	33	2	4.28915	4.454995	4.62084	0.0319595	0.0313633	0.14477	0.13151
chr4	79233335	79233435	1985762	0	+	0.28	[0,0.28]	chr4	198609	45	INTRON	INTRON	LINC01088	ENSG00000249307.8	ENST00000509088.6:ENST00000658852.1:ENST00000651041.1:ENST00000510667.5:ENST00000513153.5:ENST00000515597.1:ENST00000507476.5:ENST00000512130.5:ENST00000692734.1:ENST00000437737.3	lncRNA	lncRNA	lncRNA	lncRNA	0	33	2	4.28915	4.454995	4.62084	0.0319595	0.0313633	0.14477	0.13151
chr4	86991759	86991859	1994364	0	+	0.27	[0,0.28]	chr4	199036	178	INTRON	INTRON	AFF1	ENSG00000172493.23	ENST00000504956.5:ENST00000395146.9:ENST00000507468.5:ENST00000674009.1:ENST00000503477.5:ENST00000511442.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	33	2	4.28915	4.454995	4.62084	0.0319595	0.0313633	0.14477	0.13151
chr5	98878453	98878552	2683537	0	-	0.262626	[0,0.28]	chr5	253840	15	INTRON	INTRON	CHD1	ENSG00000153922.11	ENST00000614616.5:ENST00000284049.7	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.28915	4.454995	4.62084	0.0319595	0.0313633	0.14477	0.13151
chr6	20847477	20847577	2831521	0	+	0.26	[0,0.28]	chr6	265679	9	INTRON	INTRON	CDKAL1	ENSG00000145996.11	ENST00000274695.8:ENST00000378610.1	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.28915	4.454995	4.62084	0.0319595	0.0313633	0.14477	0.13151
chr7	131470441	131470541	3417887	0	+	0.28	[0,0.28]	chr7	319275	2	SS3_PROX	SS3_PROX:INTRON	MKLN1	ENSG00000128585.18	ENST00000421797.6:ENST00000352689.11:ENST00000494785.5:ENST00000458153.5:ENST00000498778.5:ENST00000497746.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	33	2	4.28915	4.454995	4.62084	0.0319595	0.0313633	0.14477	0.13151
chr9	78003121	78003221	4271661	0	-	0.28	[0,0.28]	chr9	392880	804	INTRON	INTRON	GNAQ	ENSG00000156052.11	ENST00000286548.9:ENST00000411677.1	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.28915	4.454995	4.62084	0.0319595	0.0313633	0.14477	0.13151
chr1	11172807	11172907	377609	0	-	0.37	(0.35,0.378]	chr1	44235	49	INTRON	INTRON	MTOR	ENSG00000198793.13	ENST00000361445.9	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.19022	4.4548749999999995	4.71953	0.0209891	0.0103314	0.122348	0.0850389
chr15	65532703	65532799	6046653	0	+	0.354167	(0.35,0.378]	chr15	575792	9	INTRON	INTRON	HACD3	ENSG00000074696.13	ENST00000562901.5:ENST00000261875.10:ENST00000442729.6:ENST00000565299.5:ENST00000568793.5:ENST00000566239.1:ENST00000566074.5:ENST00000566511.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	31	2	4.19022	4.4548749999999995	4.71953	0.0209891	0.0103314	0.122348	0.0850389
chr5	37422239	37422339	2340820	0	+	0.37	(0.35,0.378]	chr5	226227	253	INTRON	INTRON	WDR70	ENSG00000082068.9	ENST00000504564.1:ENST00000511906.5:ENST00000265107.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	31	2	4.19022	4.4548749999999995	4.71953	0.0209891	0.0103314	0.122348	0.0850389
chrX	118368636	118368736	7707333	0	+	0.37	(0.35,0.378]	chrX	788534	217	INTRON	INTRON	WDR44	ENSG00000131725.14	ENST00000371822.9:ENST00000254029.8:ENST00000371825.7:ENST00000493448.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	31	2	4.19022	4.4548749999999995	4.71953	0.0209891	0.0103314	0.122348	0.0850389
chr9	83691042	83691142	4272913	0	-	0.54	(0.515,0.57]	chr9	392981	45	INTRON	INTRON	UBQLN1	ENSG00000135018.14	ENST00000376395.9:ENST00000257468.11:ENST00000529923.1	protein_coding	protein_coding	protein_coding	protein_coding	1	57	2	3.8052	4.45484	5.10448	0.0010345	1.67082e-4	0.029231300000000002	0.0111796
chr22	20839829	20839928	7559494	0	-	0.282828	(0.28,0.32]	chr22	773216	7	INTRON	INTRON	PI4KA	ENSG00000241973.11	ENST00000255882.11:ENST00000485963.5:ENST00000449120.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	70	2	3.43186	4.454825	5.47779	0.00187048	0.00160646	0.0390476	0.0367961
chr7	155780299	155780398	3453279	0	+	0.454545	(0.44,0.476]	chr7	322755	53	UTR3	UTR3:EXON_MRNA	RBM33	ENSG00000184863.11	ENST00000401878.8:ENST00000341148.7	protein_coding	protein_coding	protein_coding	protein_coding	2	87	2	3.60668	4.45479	5.3029	0.00102616	3.22849e-5	0.029231300000000002	0.00453487
chr1	86999419	86999519	154443	0	+	0.47	(0.44,0.476]	chr1	16969	240	INTRON	INTRON	HS2ST1	ENSG00000153936.18	ENST00000370550.10:ENST00000370551.8:ENST00000687893.1:ENST00000693745.1:ENST00000689904.1:ENST00000690674.1:ENST00000591456.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	30	2	4.22393	4.454785	4.68564	0.0162322	0.00816201	0.109464	0.0766625
chr19	1053028	1053128	6993460	0	+	0.47	(0.44,0.476]	chr19	692631	3	SS3_PROX	SS3_PROX:INTRON	ABCA7	ENSG00000064687.13	ENST00000433129.6:ENST00000263094.11:ENST00000435683.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	30	2	4.22393	4.454785	4.68564	0.0162322	0.00816201	0.109464	0.0766625
chr11	457763	457862	4718975	0	+	0.525253	(0.515,0.57]	chr11	436005	59	INTRON	INTRON	PTDSS2	ENSG00000174915.12	ENST00000532614.5:ENST00000308020.6:ENST00000531520.5:ENST00000528617.5:ENST00000525727.5:ENST00000525059.1:ENST00000526558.1:ENST00000527479.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	28	2	4.31326	4.4547799999999995	4.5963	0.0141817	0.00370287	0.0959618	0.0561162
chr15	63223347	63223422	6041092	0	+	0.56	(0.515,0.57]	chr15	575237	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RAB8B	ENSG00000166128.13	ENST00000558990.5:ENST00000558119.5:ENST00000559927.1:ENST00000321437.9:ENST00000559006.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	28	2	4.31326	4.4547799999999995	4.5963	0.0141817	0.00370287	0.0959618	0.0561162
chr19	18452842	18452941	7152313	0	-	0.525253	(0.515,0.57]	chr19	722846	8	INTRON	INTRON	ELL	ENSG00000105656.13	ENST00000262809.9:ENST00000594635.6:ENST00000596124.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	28	2	4.31326	4.4547799999999995	4.5963	0.0141817	0.00370287	0.0959618	0.0561162
chr2	74023324	74023424	812172	0	+	0.54	(0.515,0.57]	chr2	90852	198	INTRON	INTRON	TET3	ENSG00000187605.16	ENST00000409262.8:ENST00000305799.8	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.31326	4.4547799999999995	4.5963	0.0141817	0.00370287	0.0959618	0.0561162
chr2	233838836	233838934	1343699	0	-	0.561224	(0.515,0.57]	chr2	140822	8	INTRON	INTRON	HJURP	ENSG00000123485.12	ENST00000433484.2:ENST00000432087.5:ENST00000441687.5:ENST00000411486.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	28	2	4.31326	4.4547799999999995	4.5963	0.0141817	0.00370287	0.0959618	0.0561162
chr3	128763331	128763431	1497582	0	+	0.52	(0.515,0.57]	chr3	156330	366	INTRON	INTRON	RAB7A	ENSG00000075785.14	ENST00000676214.1:ENST00000675864.1:ENST00000675712.1:ENST00000676425.1:ENST00000490093.6:ENST00000675342.1:ENST00000265062.8:ENST00000674748.1:ENST00000493186.6:ENST00000482525.5:ENST00000491681.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	28	2	4.31326	4.4547799999999995	4.5963	0.0141817	0.00370287	0.0959618	0.0561162
chr9	136077125	136077224	4373286	0	-	0.555556	(0.515,0.57]	chr9	402592	262	INTRON	INTRON	NACC2	ENSG00000148411.8	ENST00000277554.4	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.31326	4.4547799999999995	4.5963	0.0141817	0.00370287	0.0959618	0.0561162
chr4	67469746	67469844	2152737	0	-	0.44898	(0.44,0.476]	chr4	211903	11	UTR3	UTR3:EXON_MRNA	CENPC	ENSG00000145241.11	ENST00000273853.11	protein_coding	protein_coding	protein_coding	protein_coding	2	82	2	3.25222	4.454775	5.65733	2.3957e-4	2.39476e-4	0.0142132	0.0136403
chr20	58993764	58993850	7291373	0	+	0.383721	(0.378,0.408]	chr20	741913	1	EXON_MRNA	EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NELFCD	ENSG00000101158.15	ENST00000602795.6:ENST00000652272.2:ENST00000460601.5:ENST00000477741.5:ENST00000474543.5:ENST00000478389.5:ENST00000479207.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	120	2	3.0905300000000002	4.45462	5.81871	1.62088e-4	3.85412e-5	0.0116382	0.00500557
chr1	38996376	38996476	74449	0	+	0.46	(0.44,0.476]	chr1	9628	44	INTRON	INTRON	AKIRIN1	ENSG00000174574.16	ENST00000432648.8:ENST00000372984.8:ENST00000446189.6:ENST00000531822.1	protein_coding	protein_coding	protein_coding	protein_coding	4	112	2	2.75777	4.454585	6.1514	2.63233e-4	2.2546e-5	0.0143626	0.00386909
chr16	89812857	89812953	6544791	0	-	0.53125	(0.515,0.57]	chr16	634616	14	INTRON	INTRON	FANCA	ENSG00000187741.16	ENST00000561667.2:ENST00000389301.8:ENST00000568369.6:ENST00000564475.6:ENST00000696275.1:ENST00000696287.1:ENST00000696286.1:ENST00000696291.1:ENST00000696276.1:ENST00000567205.2:ENST00000567284.7:ENST00000696277.1:ENST00000696292.1:ENST00000563767.2:ENST00000567621.6:ENST00000696288.1:ENST00000696293.1:ENST00000566889.5:ENST00000389302.7:ENST00000696294.1:ENST00000696295.1:ENST00000563673.5:ENST00000543736.5:ENST00000534992.5:ENST00000565582.5:ENST00000696296.1:ENST00000563513.1:ENST00000567883.5:ENST00000567943.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	28	2	4.399	4.4544999999999995	4.51	0.00809449	0.00708863	0.0766625	0.0754923
chr2	235566828	235566928	1042065	0	+	0.53	(0.515,0.57]	chr2	111222	419	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1:ENST00000402604.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	28	2	4.399	4.4544999999999995	4.51	0.00809449	0.00708863	0.0766625	0.0754923
chr20	62057004	62057104	7360829	0	-	0.52	(0.515,0.57]	chr20	750714	419	INTRON	INTRON	TAF4	ENSG00000130699.20	ENST00000252996.9:ENST00000608887.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	28	2	4.399	4.4544999999999995	4.51	0.00809449	0.00708863	0.0766625	0.0754923
chr7	107099876	107099976	3377720	0	+	0.56	(0.515,0.57]	chr7	316252	76	INTRON	INTRON	PRKAR2B	ENSG00000005249.13	ENST00000265717.5:ENST00000393613.6:ENST00000488792.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	28	2	4.399	4.4544999999999995	4.51	0.00809449	0.00708863	0.0766625	0.0754923
chr8	105445677	105445777	3838517	0	+	0.57	(0.515,0.57]	chr8	354059	9	INTRON	INTRON	ZFPM2	ENSG00000169946.14	ENST00000407775.7:ENST00000520492.5:ENST00000520027.5:ENST00000524235.5:ENST00000511341.6:ENST00000522160.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	28	2	4.399	4.4544999999999995	4.51	0.00809449	0.00708863	0.0766625	0.0754923
chr19	28444188	28444287	7165529	0	-	0.525253	(0.515,0.57]	chr19	724159	61	INTRON	INTRON	ENSG00000283403:ENSG00000267243	ENSG00000283403.1:ENSG00000267243.6	ENST00000592347.5:ENST00000593065.5:ENST00000592716.1	lncRNA	lncRNA	lncRNA	lncRNA	1	57	2	3.25412	4.45443	5.65474	0.00224554	9.00945e-5	0.0435144	0.00844245
chr10	3121631	3121729	4382089	0	+	0.377551	(0.35,0.378]	chr10	404146	12	INTRON	INTRON	PFKP	ENSG00000067057.18	ENST00000381125.9:ENST00000381075.7:ENST00000678206.1:ENST00000678089.1:ENST00000676796.1:ENST00000415005.6:ENST00000413079.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	65	2	3.21677	4.45433	5.69189	0.00313804	3.71413e-4	0.0514466	0.0178698
chr6	15504971	15505064	2825544	0	+	0.354839	(0.35,0.378]	chr6	265241	4	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	JARID2	ENSG00000008083.14	ENST00000341776.7:ENST00000397311.4:ENST00000474854.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	70	2	3.44435	4.4541450000000005	5.46394	0.00179102	2.60035e-4	0.0380316	0.014326
chr21	22402335	22402434	7386392	0	+	0.444444	(0.44,0.476]	chr21	752733	20	INTRON	INTRON	ENSG00000226043	ENSG00000226043.2	ENST00000667099.1:ENST00000654607.1:ENST00000444130.1	lncRNA	lncRNA	lncRNA	lncRNA	3	181	2	4.10802	4.4539349999999995	4.79985	2.89595e-6	5.00022e-7	0.00119813	3.78502e-4
chr14	49602768	49602868	5715610	0	+	0.4	(0.378,0.408]	chr14	542702	3	SS5_PROX	SS5_PROX:INTRON	LRR1	ENSG00000165501.17	ENST00000318317.8:ENST00000554869.5:ENST00000298288.11:ENST00000540712.1:ENST00000557531.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	30	2	4.21563	4.45366	4.69169	0.0315429	0.00432302	0.13151	0.0599409
chr19	5635828	5635928	7005424	0	+	0.4	(0.378,0.408]	chr19	694957	90	INTRON	INTRON	SAFB	ENSG00000160633.13	ENST00000589863.5:ENST00000588852.2:ENST00000591666.5:ENST00000292123.9:ENST00000592224.5:ENST00000586934.5:ENST00000454510.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	30	2	4.21563	4.45366	4.69169	0.0315429	0.00432302	0.13151	0.0599409
chr4	122188679	122188770	2032907	0	+	0.395604	(0.378,0.408]	chr4	201826	2	INTRON	INTRON	KIAA1109	ENSG00000138688.17	ENST00000679879.1:ENST00000264501.8:ENST00000684987.1:ENST00000693420.1:ENST00000693334.1:ENST00000690536.1:ENST00000388738.8:ENST00000686075.1:ENST00000688884.1:ENST00000687476.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	30	2	4.21563	4.45366	4.69169	0.0315429	0.00432302	0.13151	0.0599409
chr8	129388190	129388264	4059146	0	-	0.243243	[0,0.28]	chr8	369562	3	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1:ENST00000676273.1:ENST00000667643.1:ENST00000668791.1:ENST00000663716.1:ENST00000663572.1:ENST00000676148.1:ENST00000667962.1:ENST00000674877.1:ENST00000675316.1:ENST00000674656.1:ENST00000446592.7:ENST00000667341.1:ENST00000675186.1:ENST00000652971.1:ENST00000661447.1:ENST00000674863.1:ENST00000675498.1:ENST00000675527.1:ENST00000676108.1:ENST00000657647.1:ENST00000675589.1:ENST00000675913.1:ENST00000675109.1:ENST00000671632.1:ENST00000671311.1:ENST00000676099.1:ENST00000660652.1:ENST00000675522.1:ENST00000675183.1:ENST00000658861.1:ENST00000663991.1:ENST00000674599.1:ENST00000675044.1:ENST00000675435.1:ENST00000674639.1:ENST00000676069.1:ENST00000675532.1:ENST00000674762.1:ENST00000523151.6:ENST00000675948.1:ENST00000665364.1:ENST00000657251.1:ENST00000675166.1:ENST00000674883.1:ENST00000675867.1:ENST00000674580.1:ENST00000675393.1:ENST00000520048.1:ENST00000674906.1:ENST00000676030.1:ENST00000670588.1:ENST00000675072.1:ENST00000664936.1:ENST00000652914.1	lncRNA	lncRNA	lncRNA	lncRNA	0	35	2	3.96122	4.453415	4.94561	0.0617993	0.0150263	0.193423	0.0994339
chr9	33945139	33945236	4244790	0	-	0.278351	[0,0.28]	chr9	390404	1	INTRON	INTRON	UBAP2	ENSG00000137073.24	ENST00000379238.7:ENST00000683659.1:ENST00000682239.1:ENST00000683140.1:ENST00000682209.1:ENST00000681980.1:ENST00000360802.6:ENST00000683252.1:ENST00000684158.1:ENST00000682914.1:ENST00000683717.1:ENST00000379239.9:ENST00000683084.1:ENST00000684754.1:ENST00000629575.2:ENST00000379225.2:ENST00000684298.1:ENST00000412543.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	35	2	3.96122	4.453415	4.94561	0.0617993	0.0150263	0.193423	0.0994339
chr3	5147547	5147646	1353828	0	+	0.383838	(0.378,0.408]	chr3	142361	186	INTRON	INTRON	ARL8B	ENSG00000134108.14	ENST00000429403.5:ENST00000256496.8:ENST00000455168.5:ENST00000444332.1:ENST00000419534.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	31	2	3.98867	4.453215	4.91776	0.0507	0.00196368	0.156383	0.0411469
chr3	87855310	87855410	1455638	0	+	0.38	(0.378,0.408]	chr3	153149	328	INTRON	INTRON	HTR1F	ENSG00000179097.7	ENST00000319595.7	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	3.98867	4.453215	4.91776	0.0507	0.00196368	0.156383	0.0411469
chr9	137664206	137664306	4223928	0	+	0.29	(0.28,0.32]	chr9	388170	128	INTRON	INTRON	EHMT1	ENSG00000181090.21	ENST00000462484.5:ENST00000371394.6:ENST00000630754.2:ENST00000460843.6:ENST00000626216.2:ENST00000629335.2:ENST00000637335.1:ENST00000636376.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	96	2	2.67153	4.45319	6.23485	0.00436402	1.00183e-4	0.060356	0.00904854
chr1	53237668	53237764	458952	0	-	0.395833	(0.378,0.408]	chr1	55198	17	INTRON	INTRON	MAGOH	ENSG00000162385.11	ENST00000371470.8:ENST00000371466.4:ENST00000462941.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	30	2	4.32174	4.453005	4.58427	0.0132362	0.0128325	0.0999551	0.0926667
chr15	57048557	57048657	6033412	0	+	0.38	(0.378,0.408]	chr15	574669	468	INTRON	INTRON	TCF12	ENSG00000140262.18	ENST00000438423.6:ENST00000267811.9:ENST00000333725.10:ENST00000560190.5:ENST00000559609.5:ENST00000558908.5:ENST00000557843.5:ENST00000557947.5:ENST00000561152.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	30	2	4.32174	4.453005	4.58427	0.0132362	0.0128325	0.0999551	0.0926667
chr19	40046874	40046974	7182833	0	-	0.4	(0.378,0.408]	chr19	726354	1	SS5_PROX	SS5_PROX:INTRON	ZNF780B	ENSG00000128000.17	ENST00000434248.6:ENST00000221355.10:ENST00000598845.5	protein_coding	protein_coding	protein_coding	protein_coding	0	30	2	4.32174	4.453005	4.58427	0.0132362	0.0128325	0.0999551	0.0926667
chr9	109039233	109039327	4311782	0	-	0.404255	(0.378,0.408]	chr9	396312	13	EXON_MRNA	EXON_MRNA:INTRON	TMEM245	ENSG00000106771.13	ENST00000374586.8:ENST00000472207.5:ENST00000413712.6:ENST00000491854.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	30	2	4.32174	4.453005	4.58427	0.0132362	0.0128325	0.0999551	0.0926667
chr8	102346065	102346150	4012083	0	-	0.247059	[0,0.28]	chr8	367210	3	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	UBR5	ENSG00000104517.13	ENST00000520539.6:ENST00000220959.8:ENST00000521922.5:ENST00000518145.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	76	2	3.51361	4.452915	5.39222	0.00453865	0.00142208	0.0595107	0.0346633
chr12	51010194	51010294	5324631	0	-	0.46	(0.44,0.476]	chr12	507732	1	SS5_PROX	SS5_PROX:INTRON	SLC11A2	ENSG00000110911.17	ENST00000547688.7:ENST00000644495.1:ENST00000643884.1:ENST00000546636.5:ENST00000547198.5:ENST00000394904.9:ENST00000262052.9:ENST00000643123.1:ENST00000646740.1:ENST00000642227.1:ENST00000541174.6:ENST00000546743.5:ENST00000547510.5:ENST00000546488.5:ENST00000547579.5:ENST00000550714.5:ENST00000547732.5:ENST00000548193.5:ENST00000646988.1:ENST00000549625.1:ENST00000681324.1:ENST00000550995.5:ENST00000550329.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	61	2	3.45957	4.452885	5.4462	0.00106385	5.83686e-4	0.0300133	0.0223753
chr6	45267726	45267826	3102884	0	-	0.44	(0.408,0.44]	chr6	290480	162	INTRON	INTRON	SUPT3H	ENSG00000196284.17	ENST00000475057.5:ENST00000371459.6:ENST00000371460.5:ENST00000459689.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	68	2	3.6631	4.452885	5.24267	6.21419e-4	4.83767e-4	0.0229151	0.0199261
chr19	21507597	21507675	7041247	0	+	0.410256	(0.408,0.44]	chr19	702062	2	EXON_LNCRNA	EXON_LNCRNA:INTRON	ZNF429	ENSG00000197013.11	ENST00000594022.1:ENST00000358491.9:ENST00000597078.5:ENST00000596237.5:ENST00000596126.1:ENST00000598747.1:ENST00000597556.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	30	2	4.12187	4.452675	4.78348	0.0354689	0.00290352	0.137535	0.0494641
chr20	41077185	41077284	7273991	0	+	0.414141	(0.408,0.44]	chr20	739226	10	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	TOP1	ENSG00000198900.7	ENST00000361337.3:ENST00000681113.1:ENST00000681058.1:ENST00000681392.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	30	2	4.12187	4.452675	4.78348	0.0354689	0.00290352	0.137535	0.0494641
chr4	2908014	2908096	1915687	0	+	0.439024	(0.408,0.44]	chr4	192327	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ADD1	ENSG00000087274.19	ENST00000683351.1:ENST00000398125.5:ENST00000264758.11:ENST00000513328.6:ENST00000503455.6:ENST00000355842.7:ENST00000651918.1:ENST00000398129.5:ENST00000398123.6:ENST00000514940.5:ENST00000541051.5:ENST00000513762.2:ENST00000536424.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	30	2	4.12187	4.452675	4.78348	0.0354689	0.00290352	0.137535	0.0494641
chrX	77976857	77976953	7685706	0	+	0.4375	(0.408,0.44]	chrX	786869	14	UTR3	UTR3:EXON_MRNA:INTRON	ATP7A:PGK1	ENSG00000165240.22:ENSG00000102144.15	ENST00000693051.1:ENST00000341514.11:ENST00000688746.1:ENST00000688338.1:ENST00000685264.1:ENST00000686515.1:ENST00000687086.1:ENST00000689530.1:ENST00000686999.1:ENST00000644362.1:ENST00000343533.10:ENST00000686543.1:ENST00000686033.1:ENST00000692908.1:ENST00000686688.1:ENST00000686480.1:ENST00000689649.1:ENST00000686416.1:ENST00000682742.2:ENST00000685434.1:ENST00000693387.1:ENST00000688249.1:ENST00000689891.1:ENST00000691152.1:ENST00000688889.1:ENST00000687984.1:ENST00000685208.1:ENST00000687599.1:ENST00000685885.1:ENST00000687082.1:ENST00000693167.1:ENST00000686133.1:ENST00000645094.1:ENST00000689541.1:ENST00000693398.1:ENST00000692110.1:ENST00000687325.1:ENST00000689767.1:ENST00000687628.1:ENST00000691456.1:ENST00000687416.1:ENST00000689872.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	30	2	4.12187	4.452675	4.78348	0.0354689	0.00290352	0.137535	0.0494641
chrX	24694204	24694304	7631685	0	+	0.49	(0.476,0.515]	chrX	781592	2	SS5_PROX	SS5_PROX:INTRON	POLA1	ENSG00000101868.13	ENST00000678847.1:ENST00000672178.1:ENST00000379068.8:ENST00000677890.1:ENST00000379059.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	65	2	3.45711	4.45182	5.44653	0.00140905	2.03754e-4	0.0340865	0.0124395
chr14	91132095	91132195	5805843	0	+	0.38	(0.378,0.408]	chr14	550157	28	INTRON	INTRON	DGLUCY	ENSG00000133943.21	ENST00000521334.5:ENST00000522837.5:ENST00000518871.5:ENST00000520328.5:ENST00000521081.5:ENST00000524232.5:ENST00000522170.5:ENST00000256324.15:ENST00000519950.5:ENST00000523879.5:ENST00000521077.6:ENST00000518665.6:ENST00000519994.5:ENST00000523837.5:ENST00000518868.5:ENST00000518649.5:ENST00000519019.5:ENST00000523816.5:ENST00000517518.5:ENST00000428926.6:ENST00000517362.5:ENST00000523894.5:ENST00000522322.5:ENST00000523771.5:ENST00000521064.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	31	2	4.09379	4.451735	4.80968	0.023912	0.00679828	0.129075	0.0711802
chr16	88618409	88618509	6418750	0	+	0.4	(0.378,0.408]	chr16	615832	65	INTRON	INTRON	ZC3H18	ENSG00000158545.16	ENST00000301011.10:ENST00000452588.6:ENST00000567085.1:ENST00000564161.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	31	2	4.09379	4.451735	4.80968	0.023912	0.00679828	0.129075	0.0711802
chr2	127740951	127741051	1225172	0	-	0.39	(0.378,0.408]	chr2	130486	25	INTRON	INTRON	WDR33	ENSG00000136709.12	ENST00000322313.9:ENST00000436787.5:ENST00000393006.5	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.09379	4.451735	4.80968	0.023912	0.00679828	0.129075	0.0711802
chr5	149743113	149743213	2517180	0	+	0.39	(0.378,0.408]	chr5	240647	26	INTRON	INTRON	PPARGC1B	ENSG00000155846.17	ENST00000360453.8:ENST00000394320.7:ENST00000461780.1:ENST00000309241.10	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	31	2	4.09379	4.451735	4.80968	0.023912	0.00679828	0.129075	0.0711802
chr6	119229269	119229368	3204608	0	-	0.383838	(0.378,0.408]	chr6	298302	240	INTRON	INTRON	MAN1A1	ENSG00000111885.7	ENST00000368468.4	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.09379	4.451735	4.80968	0.023912	0.00679828	0.129075	0.0711802
chr6	119256845	119256945	3204884	0	-	0.38	(0.378,0.408]	chr6	298308	81	INTRON	INTRON	MAN1A1	ENSG00000111885.7	ENST00000368468.4	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.09379	4.451735	4.80968	0.023912	0.00679828	0.129075	0.0711802
chr17	19309084	19309184	6571466	0	+	0.42	(0.408,0.44]	chr17	638985	229	INTRON	INTRON	EPN2	ENSG00000072134.16	ENST00000314728.10:ENST00000347697.6:ENST00000395618.7:ENST00000580579.5:ENST00000395628.6:ENST00000575595.5:ENST00000494192.6:ENST00000395620.6:ENST00000495155.5:ENST00000395626.5:ENST00000571254.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	30	2	4.22447	4.4517050000000005	4.67894	0.0161655	0.0087648	0.109464	0.0788605
chr17	20038388	20038488	6572077	0	+	0.43	(0.408,0.44]	chr17	639055	199	INTRON	INTRON	SPECC1	ENSG00000128487.19	ENST00000677148.1:ENST00000679048.1:ENST00000678019.1:ENST00000678315.1:ENST00000678321.1:ENST00000676570.1:ENST00000678651.1:ENST00000679049.1:ENST00000472876.5:ENST00000467722.3:ENST00000583528.6:ENST00000680019.1:ENST00000395527.9:ENST00000681593.1:ENST00000680830.1:ENST00000680124.1:ENST00000583482.7:ENST00000679255.1:ENST00000681202.1:ENST00000677914.1:ENST00000578321.2:ENST00000680374.1:ENST00000583463.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	30	2	4.22447	4.4517050000000005	4.67894	0.0161655	0.0087648	0.109464	0.0788605
chr17	51232808	51232908	6797597	0	-	0.41	(0.408,0.44]	chr17	671120	72	INTRON	INTRON	MBTD1	ENSG00000011258.16	ENST00000586178.6:ENST00000405860.7:ENST00000591270.1:ENST00000593259.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	30	2	4.22447	4.4517050000000005	4.67894	0.0161655	0.0087648	0.109464	0.0788605
chr20	35829865	35829965	7263465	0	+	0.44	(0.408,0.44]	chr20	738073	279	INTRON	INTRON	PHF20	ENSG00000025293.17	ENST00000461122.5:ENST00000374012.8:ENST00000452270.5:ENST00000374000.8:ENST00000339089.10:ENST00000481202.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	30	2	4.22447	4.4517050000000005	4.67894	0.0161655	0.0087648	0.109464	0.0788605
chr22	49778313	49778412	7602723	0	-	0.434343	(0.408,0.44]	chr22	778623	1	INTRON	INTRON	BRD1	ENSG00000100425.19	ENST00000404760.6:ENST00000404034.5:ENST00000216267.12:ENST00000438393.5:ENST00000457780.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	30	2	4.22447	4.4517050000000005	4.67894	0.0161655	0.0087648	0.109464	0.0788605
chr3	47607971	47608070	1683302	0	-	0.414141	(0.408,0.44]	chr3	171963	168	INTRON	INTRON	SMARCC1	ENSG00000173473.11	ENST00000254480.10:ENST00000425518.5:ENST00000492896.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	30	2	4.22447	4.4517050000000005	4.67894	0.0161655	0.0087648	0.109464	0.0788605
chr3	48555685	48555785	1688911	0	-	0.41	(0.408,0.44]	chr3	172588	2	SS5_PROX	SS5_PROX:INTRON	PFKFB4	ENSG00000114268.12	ENST00000232375.8:ENST00000490115.5:ENST00000383734.6:ENST00000416568.5:ENST00000417753.5:ENST00000445633.5:ENST00000452531.5:ENST00000412035.5:ENST00000496767.5:ENST00000422701.1:ENST00000467176.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	30	2	4.22447	4.4517050000000005	4.67894	0.0161655	0.0087648	0.109464	0.0788605
chr6	43005546	43005645	2868172	0	+	0.424242	(0.408,0.44]	chr6	271466	155	INTRON	INTRON	PPP2R5D	ENSG00000112640.16	ENST00000394110.7:ENST00000472118.5:ENST00000485511.6:ENST00000230402.10:ENST00000461010.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	30	2	4.22447	4.4517050000000005	4.67894	0.0161655	0.0087648	0.109464	0.0788605
chr7	44454281	44454381	3527925	0	-	0.41	(0.408,0.44]	chr7	328977	262	INTRON	INTRON	NUDCD3	ENSG00000015676.18	ENST00000355451.8:ENST00000460110.5:ENST00000472246.5:ENST00000464812.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	30	2	4.22447	4.4517050000000005	4.67894	0.0161655	0.0087648	0.109464	0.0788605
chr7	55367225	55367325	3317740	0	+	0.43	(0.408,0.44]	chr7	308305	6	INTRON	INTRON	LANCL2	ENSG00000132434.10	ENST00000254770.3:ENST00000452107.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	30	2	4.22447	4.4517050000000005	4.67894	0.0161655	0.0087648	0.109464	0.0788605
chr9	137801484	137801568	4225348	0	+	0.416667	(0.408,0.44]	chr9	388361	1	INTRON	INTRON	EHMT1	ENSG00000181090.21	ENST00000460843.6:ENST00000636027.1:ENST00000637161.1:ENST00000637261.1:ENST00000462942.3:ENST00000637891.1:ENST00000637949.1:ENST00000493484.5:ENST00000482340.5:ENST00000486164.5:ENST00000488242.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	30	2	4.22447	4.4517050000000005	4.67894	0.0161655	0.0087648	0.109464	0.0788605
chr1	28528757	28528857	57406	0	+	0.25	[0,0.28]	chr1	7407	94	INTRON	INTRON	RCC1	ENSG00000180198.17	ENST00000398958.6:ENST00000649185.1:ENST00000427469.5:ENST00000683442.1:ENST00000434290.6:ENST00000373833.10:ENST00000419074.5:ENST00000373832.5:ENST00000373831.7:ENST00000411533.5:ENST00000486790.2:ENST00000430407.1	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.07901	4.45167	4.82433	0.0494049	0.0200334	0.174117	0.109608
chr12	1707373	1707473	5064331	0	+	0.18	[0,0.28]	chr12	477866	40	INTRON	INTRON	ADIPOR2	ENSG00000006831.10	ENST00000537545.1:ENST00000357103.5:ENST00000540974.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	34	2	4.07901	4.45167	4.82433	0.0494049	0.0200334	0.174117	0.109608
chr2	135099281	135099380	873143	0	+	0.232323	[0,0.28]	chr2	97757	52	INTRON	INTRON	RAB3GAP1	ENSG00000115839.19	ENST00000539493.3:ENST00000688088.1:ENST00000693554.1:ENST00000690785.1:ENST00000689880.1:ENST00000264158.13:ENST00000690208.1:ENST00000691478.1:ENST00000686114.1:ENST00000685967.1:ENST00000442034.5:ENST00000687199.1:ENST00000691339.1:ENST00000688182.1:ENST00000487003.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	34	2	4.07901	4.45167	4.82433	0.0494049	0.0200334	0.174117	0.109608
chr21	18685152	18685252	7434654	0	-	0.24	[0,0.28]	chr21	758112	725	INTRON	INTRON	MIR548XHG	ENSG00000224141.6	ENST00000671206.1:ENST00000437492.6:ENST00000355189.7:ENST00000653218.1:ENST00000656413.1:ENST00000414582.1	lncRNA	lncRNA	lncRNA	lncRNA	0	34	2	4.07901	4.45167	4.82433	0.0494049	0.0200334	0.174117	0.109608
chr5	28940579	28940679	2331158	0	+	0.28	[0,0.28]	chr5	225139	134	INTRON	INTRON	LINC02109	ENSG00000259786.7	ENST00000658190.1	lncRNA	lncRNA	lncRNA	lncRNA	0	34	2	4.07901	4.45167	4.82433	0.0494049	0.0200334	0.174117	0.109608
chr5	105172900	105173000	2694155	0	-	0.27	[0,0.28]	chr5	254244	1636	INTRON	INTRON	ENSG00000251574:ENSG00000253584	ENSG00000251574.8:ENSG00000253584.1	ENST00000503650.1:ENST00000522464.1	lncRNA	lncRNA	lncRNA	lncRNA	0	34	2	4.07901	4.45167	4.82433	0.0494049	0.0200334	0.174117	0.109608
chr2	32033116	32033215	1091351	0	-	0.545455	(0.515,0.57]	chr2	116949	30	INTRON	INTRON	DPY30	ENSG00000162961.14	ENST00000452582.5:ENST00000414013.5:ENST00000430665.5:ENST00000422413.1:ENST00000342166.10:ENST00000295066.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	59	2	3.2024	4.45165	5.7009	0.00322022	2.61423e-5	0.0507087	0.00402177
chr1	224989714	224989814	322969	0	+	0.3	(0.28,0.32]	chr1	37166	152	INTRON	INTRON	DNAH14	ENSG00000185842.16	ENST00000445597.6:ENST00000430092.5:ENST00000400952.7:ENST00000682510.1:ENST00000366849.5:ENST00000439375.6	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.14214	4.451225	4.76031	0.0579756	0.00656106	0.167723	0.0735539
chr1	245801741	245801841	673639	0	-	0.29	(0.28,0.32]	chr1	79663	129	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000366517.5:ENST00000366516.5:ENST00000490107.6:ENST00000470510.5:ENST00000483072.5:ENST00000490322.1:ENST00000493441.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	32	2	4.14214	4.451225	4.76031	0.0579756	0.00656106	0.167723	0.0735539
chr15	56935888	56935988	6032284	0	+	0.32	(0.28,0.32]	chr15	574663	144	INTRON	INTRON	TCF12	ENSG00000140262.18	ENST00000438423.6:ENST00000267811.9:ENST00000333725.10:ENST00000560190.5:ENST00000559609.5:ENST00000558908.5:ENST00000557843.5:ENST00000557947.5:ENST00000561152.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	32	2	4.14214	4.451225	4.76031	0.0579756	0.00656106	0.167723	0.0735539
chr15	89602222	89602295	6097379	0	+	0.30137	(0.28,0.32]	chr15	580332	3	SS5_PROX	SS5_PROX:INTRON	TICRR	ENSG00000140534.14	ENST00000268138.12:ENST00000560985.5	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.14214	4.451225	4.76031	0.0579756	0.00656106	0.167723	0.0735539
chr2	169928226	169928326	909167	0	+	0.31	(0.28,0.32]	chr2	100309	1	SS3_PROX	SS3_PROX:INTRON	UBR3	ENSG00000144357.18	ENST00000272793.11	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.14214	4.451225	4.76031	0.0579756	0.00656106	0.167723	0.0735539
chr7	152210656	152210756	3679004	0	-	0.29	(0.28,0.32]	chr7	341526	18	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000683200.1:ENST00000682283.1:ENST00000473186.5:ENST00000679882.1:ENST00000680969.1:ENST00000681033.1:ENST00000682176.1:ENST00000679645.1:ENST00000684550.1:ENST00000489110.2:ENST00000681838.1:ENST00000683490.1:ENST00000684623.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	32	2	4.14214	4.451225	4.76031	0.0579756	0.00656106	0.167723	0.0735539
chr9	137664605	137664705	4223932	0	+	0.32	(0.28,0.32]	chr9	388170	132	INTRON	INTRON	EHMT1	ENSG00000181090.21	ENST00000462484.5:ENST00000371394.6:ENST00000630754.2:ENST00000460843.6:ENST00000626216.2:ENST00000629335.2:ENST00000637335.1:ENST00000636376.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	32	2	4.14214	4.451225	4.76031	0.0579756	0.00656106	0.167723	0.0735539
chr9	100318865	100318965	4308824	0	-	0.51	(0.476,0.515]	chr9	395838	81	INTRON	INTRON	TEX10	ENSG00000136891.14	ENST00000535814.5:ENST00000374902.9	protein_coding	protein_coding	protein_coding	protein_coding	1	61	2	3.44784	4.45087	5.4539	0.00113238	5.16081e-4	0.0308465	0.0208667
chr16	74896604	74896704	6526380	0	-	0.31	(0.28,0.32]	chr16	632039	24	INTRON	INTRON	WDR59	ENSG00000103091.15	ENST00000262144.11:ENST00000563797.5:ENST00000569788.5:ENST00000563381.5:ENST00000569229.5:ENST00000566924.1:ENST00000570070.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	32	2	4.23719	4.4503900000000005	4.66359	0.0264147	0.0193496	0.133676	0.108861
chr21	45445931	45446030	7419915	0	+	0.313131	(0.28,0.32]	chr21	756409	401	INTRON	INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.23719	4.4503900000000005	4.66359	0.0264147	0.0193496	0.133676	0.108861
chr4	103127148	103127247	2214853	0	-	0.282828	(0.28,0.32]	chr4	216987	37	INTRON	INTRON	CENPE	ENSG00000138778.14	ENST00000380026.8:ENST00000265148.9	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.23719	4.4503900000000005	4.66359	0.0264147	0.0193496	0.133676	0.108861
chr9	130743954	130744054	4214164	0	+	0.31	(0.28,0.32]	chr9	386427	291	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000393293.4	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.23719	4.4503900000000005	4.66359	0.0264147	0.0193496	0.133676	0.108861
chr9	91882457	91882557	4284587	0	-	0.4	(0.378,0.408]	chr9	393909	1063	INTRON	INTRON	ROR2	ENSG00000169071.15	ENST00000375715.5:ENST00000375708.4:ENST00000550066.5:ENST00000495386.5:ENST00000546883.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	114	2	2.49361	4.45014	6.40667	0.00109695	9.01514e-6	0.0303708	0.00231371
chr4	2680440	2680540	1913972	0	+	0.45	(0.44,0.476]	chr4	192052	77	INTRON	INTRON	FAM193A	ENSG00000125386.16	ENST00000637812.2:ENST00000324666.9:ENST00000382839.7:ENST00000512465.5:ENST00000545951.5:ENST00000502458.5:ENST00000513898.5:ENST00000505311.5:ENST00000513350.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	62	2	3.75608	4.44993	5.14378	0.00184943	2.6487e-4	0.0388609	0.0144071
chr12	93488188	93488288	5189464	0	+	0.54	(0.515,0.57]	chr12	490855	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	MRPL42	ENSG00000198015.14	ENST00000549982.6:ENST00000552217.6:ENST00000393128.8:ENST00000552326.5:ENST00000358678.7:ENST00000547098.5:ENST00000551396.5:ENST00000549561.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	117	2	4.12784	4.449165	4.77049	4.0232e-5	3.65114e-7	0.00539487	3.09494e-4
chr5	142137733	142137795	2505816	0	+	0.451613	(0.44,0.476]	chr5	239842	1	CDS	CDS:EXON_MRNA	NDFIP1	ENSG00000131507.11	ENST00000253814.6:ENST00000505614.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	112	2	2.8038	4.449154999999999	6.09451	2.03038e-4	3.01924e-5	0.0124395	0.00456171
chr15	92919185	92919284	6103883	0	+	0.424242	(0.408,0.44]	chr15	581405	38	INTRON	INTRON	ENSG00000279765:CHD2	ENSG00000279765.3:ENSG00000173575.22	ENST00000629685.2:ENST00000630790.1:ENST00000626874.2:ENST00000394196.9:ENST00000635856.1:ENST00000420239.7:ENST00000628375.2:ENST00000625990.3:ENST00000626782.2:ENST00000629136.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	61	2	3.41323	4.448695	5.48416	0.00129989	5.43528e-4	0.0333764	0.0215026
chr1	150460717	150460817	222670	0	+	0.39	(0.378,0.408]	chr1	25103	4	SS5_PROX	SS5_PROX:INTRON	RPRD2	ENSG00000163125.16	ENST00000492220.1:ENST00000369068.5:ENST00000401000.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	64	2	3.1136	4.448665	5.78373	0.00443339	1.89312e-4	0.061054	0.012565
chr2	55298639	55298737	1123132	0	-	0.469388	(0.44,0.476]	chr2	120407	16	INTRON	INTRON	CCDC88A	ENSG00000115355.18	ENST00000263630.13:ENST00000436346.7:ENST00000336838.10:ENST00000642200.1:ENST00000413716.7:ENST00000643413.1:ENST00000644512.1:ENST00000643375.1:ENST00000647401.1:ENST00000412148.6:ENST00000444458.5:ENST00000646285.1:ENST00000647396.1:ENST00000642563.1:ENST00000643265.1:ENST00000644415.1:ENST00000645311.1:ENST00000646796.1:ENST00000643873.1:ENST00000647291.1:ENST00000644456.1:ENST00000645450.1:ENST00000645860.1:ENST00000644825.1:ENST00000426576.6:ENST00000643440.1:ENST00000456975.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	65	2	3.35227	4.448665	5.54506	0.0022005699999999998	1.21665e-4	0.0417893	0.00942499
chr7	23531968	23532041	3503958	0	-	0.671233	(0.57,1]	chr7	326980	3	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	TRA2A	ENSG00000164548.12	ENST00000297071.9:ENST00000392502.8:ENST00000538367.6:ENST00000621813.4:ENST00000494255.5:ENST00000490942.1:ENST00000448549.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	154	2	3.88327	4.448565	5.01386	1.15001e-8	4.84146e-9	3.64339e-5	1.66999e-5
chr14	27617437	27617537	5849026	0	-	0.39	(0.378,0.408]	chr14	556260	2949	INTRON	INTRON	ENSG00000258932	ENSG00000258932.5	ENST00000553392.5:ENST00000554904.5:ENST00000556890.1:ENST00000555797.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	1	69	2	3.61158	4.448395	5.28521	8.34292e-4	4.52877e-4	0.0266389	0.0192381
chr5	149501275	149501374	2750565	0	-	0.40404	(0.378,0.408]	chr5	259005	1	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	CSNK1A1:ENSG00000230551	ENSG00000113712.19:ENSG00000230551.4	ENST00000261798.10:ENST00000377843.8:ENST00000657001.1:ENST00000499521.2:ENST00000515768.6:ENST00000606719.6:ENST00000657462.1:ENST00000661952.1:ENST00000504676.5:ENST00000515435.5:ENST00000662268.1:ENST00000657706.1:ENST00000606826.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	91	2	3.03888	4.448335	5.85779	0.00102794	2.83884e-5	0.029231300000000002	0.00422437
chr11	57490261	57490353	4953535	0	-	0.467391	(0.44,0.476]	chr11	465005	5	INTRON	INTRON	SLC43A1	ENSG00000149150.9	ENST00000278426.8:ENST00000528450.5:ENST00000525764.5	protein_coding	protein_coding	protein_coding	protein_coding	1	66	2	3.54632	4.44832	5.35032	9.9951e-4	3.02713e-4	0.0288906	0.0155054
chr19	865334	865433	6992407	0	+	0.494949	(0.476,0.515]	chr19	692337	18	INTRON	INTRON	CFD	ENSG00000197766.9	ENST00000695946.1	protein_coding	protein_coding	protein_coding	protein_coding	1	65	2	2.94692	4.448145	5.94937	0.00794331	5.50774e-5	0.0797304	0.0065165
chr13	102632202	102632298	5532352	0	+	0.354167	(0.35,0.378]	chr13	528693	8	INTRON	INTRON	TPP2	ENSG00000134900.12	ENST00000376052.5:ENST00000651448.1:ENST00000376065.8:ENST00000652308.1:ENST00000651544.1:ENST00000651748.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	71	2	2.89003	4.448035	6.00604	0.0122391	1.74719e-5	0.0910127	0.00318005
chr16	191770	191864	6425804	0	-	0.542553	(0.515,0.57]	chr16	617409	6	INTRON	INTRON	LUC7L	ENSG00000007392.17	ENST00000337351.8:ENST00000426094.5:ENST00000397783.5:ENST00000629543.2:ENST00000490762.5:ENST00000293872.13:ENST00000429378.5:ENST00000464711.5:ENST00000419516.5:ENST00000397780.5:ENST00000495349.5:ENST00000418978.5:ENST00000430864.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	56	2	3.37125	4.44775	5.52425	0.00136343	1.68822e-4	0.0339121	0.0119215
chr10	5931263	5931363	4385621	0	+	0.37	(0.35,0.378]	chr10	404742	15	INTRON	INTRON	FBH1	ENSG00000134452.20	ENST00000397269.7:ENST00000362091.9:ENST00000379999.6:ENST00000461504.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	69	2	3.2953	4.446885	5.59847	0.0031465	1.39739e-4	0.0500431	0.0101825
chr2	173938404	173938503	1268801	0	-	0.383838	(0.378,0.408]	chr2	134213	36	INTRON	INTRON	SP3	ENSG00000172845.18	ENST00000650743.1:ENST00000310015.12:ENST00000416195.1:ENST00000418194.7:ENST00000652005.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	90	2	2.86464	4.446815	6.02899	0.00215581	1.10219e-5	0.0417866	0.00244464
chr8	67154336	67154436	3777566	0	+	0.32	(0.28,0.32]	chr8	350404	2	SS5_PROX	SS5_PROX:INTRON	CSPP1	ENSG00000104218.16	ENST00000676113.1:ENST00000675306.2:ENST00000678156.1:ENST00000262210.11:ENST00000678017.1:ENST00000675869.1:ENST00000678542.1:ENST00000677619.1:ENST00000676605.1:ENST00000676471.1:ENST00000677256.1:ENST00000676847.1:ENST00000677009.1:ENST00000676317.1:ENST00000677592.1:ENST00000676573.1:ENST00000678318.1:ENST00000677473.1:ENST00000674993.1:ENST00000679226.1:ENST00000676882.1:ENST00000675955.1:ENST00000677430.1:ENST00000677455.1:ENST00000678616.1:ENST00000678362.1:ENST00000679112.1:ENST00000678645.1:ENST00000676567.1:ENST00000677845.1:ENST00000519163.6:ENST00000676858.1:ENST00000678747.1:ENST00000519668.1:ENST00000676697.1:ENST00000677855.1:ENST00000676695.1:ENST00000676534.1:ENST00000678138.1:ENST00000678807.1:ENST00000677052.1:ENST00000679274.1:ENST00000679042.1:ENST00000678635.1:ENST00000676804.1:ENST00000679295.1:ENST00000677964.1:ENST00000676968.1:ENST00000678895.1:ENST00000678723.1:ENST00000677131.1:ENST00000521324.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	76	2	3.12332	4.446775	5.77023	0.00698537	1.45293e-4	0.0718189	0.0104769
chr15	65609989	65610087	6208394	0	-	0.367347	(0.35,0.378]	chr15	592414	22	INTRON	INTRON	INTS14	ENSG00000138614.16	ENST00000573314.5:ENST00000313182.7:ENST00000652388.1:ENST00000567744.5:ENST00000431261.6:ENST00000569491.5:ENST00000420799.7:ENST00000442903.3:ENST00000564306.5:ENST00000561769.1:ENST00000567923.2:ENST00000568573.1:ENST00000567940.1:ENST00000562830.1:ENST00000569565.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	64	2	3.58286	4.44672	5.31058	0.00160599	6.77448e-4	0.0364977	0.0236287
chrX	44933484	44933584	7649205	0	+	0.54	(0.515,0.57]	chrX	782726	591	INTRON	INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000675440.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000621147.5:ENST00000475233.1:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	74	2	3.23735	4.446045	5.65474	2.1866e-4	9.00945e-5	0.0129728	0.00844245
chr2	174118986	174119086	1269553	0	-	0.23	[0,0.28]	chr2	134263	366	INTRON	INTRON	OLA1	ENSG00000138430.16	ENST00000284719.8:ENST00000344357.9:ENST00000428402.6:ENST00000409546.5:ENST00000392560.6:ENST00000462000.1:ENST00000429575.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	75	2	3.30083	4.446025	5.59122	0.00319246	0.00247649	0.0520345	0.0446195
chr1	227262096	227262195	651156	0	-	0.343434	(0.32,0.35]	chr1	77108	76	INTRON	INTRON	CDC42BPA	ENSG00000143776.20	ENST00000366766.8:ENST00000366769.7:ENST00000334218.9:ENST00000366767.7:ENST00000366764.8:ENST00000478573.6:ENST00000682551.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	31	2	4.17181	4.445755	4.7197	0.04531	0.00568521	0.149888	0.0678837
chr11	17300848	17300947	4748340	0	+	0.333333	(0.32,0.35]	chr11	439504	43	INTRON	INTRON	NUCB2	ENSG00000070081.18	ENST00000646648.1:ENST00000530527.5:ENST00000533773.5:ENST00000529010.6:ENST00000323688.10:ENST00000529313.5:ENST00000533926.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	31	2	4.17181	4.445755	4.7197	0.04531	0.00568521	0.149888	0.0678837
chr12	24931245	24931344	5297734	0	-	0.333333	(0.32,0.35]	chr12	503884	283	INTRON	INTRON	BCAT1	ENSG00000060982.15	ENST00000261192.12:ENST00000342945.9:ENST00000539780.5:ENST00000546285.1	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.17181	4.445755	4.7197	0.04531	0.00568521	0.149888	0.0678837
chr14	50451190	50451289	5889695	0	-	0.323232	(0.32,0.35]	chr14	559197	7	INTRON	INTRON	MAP4K5	ENSG00000012983.12	ENST00000682126.1:ENST00000013125.9:ENST00000557390.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	31	2	4.17181	4.445755	4.7197	0.04531	0.00568521	0.149888	0.0678837
chr14	58300160	58300260	5731209	0	+	0.35	(0.32,0.35]	chr14	544140	3	SS5_PROX	SS5_PROX:INTRON	ARID4A	ENSG00000032219.19	ENST00000348476.7:ENST00000355431.8:ENST00000395168.7:ENST00000431612.5:ENST00000445108.5:ENST00000424658.5:ENST00000431317.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	89	2	2.89475	4.445755	5.99676	0.00160352	1.55894e-4	0.0367961	0.0113565
chr17	42211483	42211583	6771564	0	-	0.33	(0.32,0.35]	chr17	666905	1	SS5_PROX	SS5_PROX:INTRON	STAT5B	ENSG00000173757.10	ENST00000293328.8:ENST00000468496.5:ENST00000481517.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	31	2	4.17181	4.445755	4.7197	0.04531	0.00568521	0.149888	0.0678837
chr3	121739243	121739343	1799600	0	-	0.33	(0.32,0.35]	chr3	180806	79	INTRON	INTRON	GOLGB1	ENSG00000173230.17	ENST00000340645.10:ENST00000614479.5:ENST00000393667.8:ENST00000694957.1:ENST00000695107.1:ENST00000482512.6:ENST00000494517.6:ENST00000694982.1:ENST00000695016.1:ENST00000694958.1:ENST00000695018.1:ENST00000695017.1:ENST00000695008.1:ENST00000472475.2:ENST00000695040.1:ENST00000695010.1:ENST00000694975.1:ENST00000695011.1:ENST00000695020.1:ENST00000694984.1:ENST00000694985.1:ENST00000695022.1:ENST00000695110.1:ENST00000694959.1:ENST00000694960.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	31	2	4.17181	4.445755	4.7197	0.04531	0.00568521	0.149888	0.0678837
chr6	145803278	145803377	3243965	0	-	0.323232	(0.32,0.35]	chr6	301273	26	INTRON	INTRON	FBXO30	ENSG00000118496.5	ENST00000237281.5	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.17181	4.445755	4.7197	0.04531	0.00568521	0.149888	0.0678837
chr8	22175546	22175642	3712120	0	+	0.333333	(0.32,0.35]	chr8	344641	15	INTRON	INTRON	BMP1	ENSG00000168487.20	ENST00000354870.5:ENST00000397814.7:ENST00000520970.5:ENST00000518913.5:ENST00000520626.6:ENST00000520982.5:ENST00000518656.5:ENST00000306385.10:ENST00000306349.13:ENST00000471755.5:ENST00000483364.5:ENST00000521385.5:ENST00000521521.5:ENST00000523849.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	31	2	4.17181	4.445755	4.7197	0.04531	0.00568521	0.149888	0.0678837
chr22	37860316	37860413	7511802	0	+	0.391753	(0.378,0.408]	chr22	767179	12	INTRON	INTRON	EIF3L	ENSG00000100129.18	ENST00000412331.6:ENST00000624234.3:ENST00000439997.5:ENST00000381683.10:ENST00000476955.5:ENST00000652021.1:ENST00000436452.6:ENST00000414316.5:ENST00000477256.5:ENST00000406934.5:ENST00000451427.1:ENST00000464790.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	62	2	3.3797	4.44572	5.51174	0.00154501	5.93655e-4	0.0362716	0.0225024
chr1	86965864	86965963	154106	0	+	0.343434	(0.32,0.35]	chr1	16962	70	INTRON	INTRON	HS2ST1	ENSG00000153936.18	ENST00000370550.10:ENST00000370551.8:ENST00000687893.1:ENST00000693745.1:ENST00000689904.1:ENST00000690674.1:ENST00000591456.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	31	2	4.27113	4.44501	4.61889	0.0199982	0.0166646	0.120668	0.102621
chr15	78162467	78162567	6067366	0	+	0.33	(0.32,0.35]	chr15	577874	1	SS5_PROX	SS5_PROX:INTRON	IDH3A	ENSG00000166411.14	ENST00000558933.5:ENST00000560667.5:ENST00000558554.5:ENST00000299518.7:ENST00000558509.5:ENST00000559889.5:ENST00000559205.1:ENST00000559803.5:ENST00000558602.5:ENST00000558535.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	31	2	4.27113	4.44501	4.61889	0.0199982	0.0166646	0.120668	0.102621
chr20	57392396	57392416	7288775	0	+	0.35	(0.32,0.35]	chr20	741591	1	CDS_STOP	CDS_STOP:CDS:UTR5:EXON_MRNA:SS3_PROX:INTRON	RBM38	ENSG00000132819.17	ENST00000356208.10:ENST00000440234.6:ENST00000342690.4:ENST00000344785.10:ENST00000371219.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	31	2	4.27113	4.44501	4.61889	0.0199982	0.0166646	0.120668	0.102621
chr7	158895001	158895100	3456521	0	+	0.343434	(0.32,0.35]	chr7	323179	33	INTRON	INTRON	DYNC2I1	ENSG00000126870.16	ENST00000407559.8:ENST00000444851.5:ENST00000467220.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	31	2	4.27113	4.44501	4.61889	0.0199982	0.0166646	0.120668	0.102621
chr17	41780474	41780574	6769275	0	-	0.48	(0.476,0.515]	chr17	666305	72	INTRON	INTRON	JUP	ENSG00000173801.17	ENST00000310706.9:ENST00000393930.5:ENST00000393931.8:ENST00000449889.5:ENST00000437187.5:ENST00000424457.5:ENST00000591690.5:ENST00000437369.5:ENST00000589036.1:ENST00000465293.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	63	2	3.85485	4.444755	5.03466	0.00252065	1.63076e-4	0.0446195	0.0109774
chr10	21570278	21570378	4404775	0	+	0.57	(0.515,0.57]	chr10	406446	121	INTRON	INTRON	MLLT10	ENSG00000078403.17	ENST00000651097.1:ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000650772.1:ENST00000651298.1:ENST00000495130.5:ENST00000377059.7:ENST00000476557.5:ENST00000462999.5:ENST00000430455.2:ENST00000479634.1:ENST00000480415.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	28	2	4.20381	4.444744999999999	4.68568	0.0189208	0.00270027	0.108861	0.0479115
chr2	175993633	175993723	1273120	0	-	0.544444	(0.515,0.57]	chr2	134584	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	LNPK	ENSG00000144320.14	ENST00000272748.9:ENST00000544803.5:ENST00000409660.5:ENST00000392540.6:ENST00000483230.5:ENST00000445472.1:ENST00000466445.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	28	2	4.20381	4.444744999999999	4.68568	0.0189208	0.00270027	0.108861	0.0479115
chr22	31430975	31431075	7503331	0	+	0.53	(0.515,0.57]	chr22	765635	34	INTRON	INTRON	DRG1	ENSG00000185721.13	ENST00000331457.9:ENST00000469673.1:ENST00000548143.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	28	2	4.20381	4.444744999999999	4.68568	0.0189208	0.00270027	0.108861	0.0479115
chr8	129960653	129960753	4063372	0	-	0.52	(0.515,0.57]	chr8	369838	112	INTRON	INTRON	CYRIB	ENSG00000153310.21	ENST00000694912.1:ENST00000523288.5:ENST00000519110.5:ENST00000401979.6:ENST00000523509.5:ENST00000517654.5:ENST00000519142.5:ENST00000518879.5:ENST00000522702.5:ENST00000521223.5:ENST00000518283.5:ENST00000523993.5:ENST00000519020.5:ENST00000518167.5:ENST00000517672.5:ENST00000522361.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	28	2	4.20381	4.444744999999999	4.68568	0.0189208	0.00270027	0.108861	0.0479115
chr9	135816602	135816699	4371336	0	-	0.525773	(0.515,0.57]	chr9	402402	2	INTRON	INTRON	CAMSAP1	ENSG00000130559.19	ENST00000389532.9:ENST00000312405.10:ENST00000483991.5:ENST00000409386.3:ENST00000482664.5:ENST00000487868.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	28	2	4.20381	4.444744999999999	4.68568	0.0189208	0.00270027	0.108861	0.0479115
chr1	33044602	33044702	416939	0	-	0.36	(0.35,0.378]	chr1	50362	77	INTRON	INTRON	AK2	ENSG00000004455.18	ENST00000548559.1	protein_coding	processed_transcript	protein_coding	processed_transcript	0	30	2	4.39303	4.444645	4.49626	0.0237246	0.00917582	0.118716	0.0855292
chr10	68464079	68464178	4639690	0	-	0.353535	(0.35,0.378]	chr10	426716	45	INTRON	INTRON	DNA2	ENSG00000138346.15	ENST00000358410.8:ENST00000551118.6:ENST00000399179.6:ENST00000399180.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	30	2	4.39303	4.444645	4.49626	0.0237246	0.00917582	0.118716	0.0855292
chr2	121658605	121658705	860626	0	+	0.37	(0.35,0.378]	chr2	96532	57	INTRON	INTRON	NIFK-AS1	ENSG00000236859.8	ENST00000667483.1:ENST00000662168.1:ENST00000654001.1:ENST00000659307.1:ENST00000419902.3:ENST00000690074.1:ENST00000666647.1	lncRNA	lncRNA	lncRNA	lncRNA	0	30	2	4.39303	4.444645	4.49626	0.0237246	0.00917582	0.118716	0.0855292
chr6	79229862	79229961	3142382	0	-	0.363636	(0.35,0.378]	chr6	292935	145	INTRON	INTRON	HMGN3	ENSG00000118418.14	ENST00000344726.9:ENST00000275036.11:ENST00000620514.1	protein_coding	protein_coding	protein_coding	protein_coding	0	30	2	4.39303	4.444645	4.49626	0.0237246	0.00917582	0.118716	0.0855292
chr7	128322015	128322107	3635030	0	-	0.369565	(0.35,0.378]	chr7	337852	2	INTRON	INTRON	RBM28	ENSG00000106344.8	ENST00000223073.6:ENST00000415472.6	protein_coding	protein_coding	protein_coding	protein_coding	0	30	2	4.39303	4.444645	4.49626	0.0237246	0.00917582	0.118716	0.0855292
chr9	111375402	111375502	4314161	0	-	0.26	[0,0.28]	chr9	396639	2	SS3_PROX	SS3_PROX:INTRON	ECPAS	ENSG00000136813.15	ENST00000684092.1:ENST00000338205.9:ENST00000259335.8	protein_coding	protein_coding	protein_coding	protein_coding	1	78	2	3.72771	4.4445049999999995	5.1613	0.00866441	5.87492e-4	0.0787025	0.0220073
chr20	31795048	31795145	7254233	0	+	0.515464	(0.515,0.57]	chr20	736815	1	INTRON	INTRON	TPX2	ENSG00000088325.16	ENST00000340513.4:ENST00000300403.11	protein_coding	protein_coding	protein_coding	protein_coding	1	57	2	3.84625	4.44425	5.04225	0.00131841	1.34155e-4	0.0331539	0.00998237
chr1	149847667	149847766	549467	0	-	0.565657	(0.515,0.57]	chr1	64512	33	EXON_LNCRNA	EXON_LNCRNA	H2BC20P	ENSG00000261716.2	ENST00000564237.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	28	2	4.28921	4.4441749999999995	4.59914	0.00990051	0.00616166	0.0877296	0.0676501
chr11	68391645	68391745	4816730	0	+	0.52	(0.515,0.57]	chr11	448789	12	INTRON	INTRON	LRP5	ENSG00000162337.12	ENST00000294304.12:ENST00000529993.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	28	2	4.28921	4.4441749999999995	4.59914	0.00990051	0.00616166	0.0877296	0.0676501
chr12	57946594	57946694	5149382	0	+	0.52	(0.515,0.57]	chr12	487244	2	SS3_PROX	SS3_PROX:INTRON	ATP23	ENSG00000166896.9	ENST00000647763.1:ENST00000551997.1:ENST00000300145.4:ENST00000549257.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	28	2	4.28921	4.4441749999999995	4.59914	0.00990051	0.00616166	0.0877296	0.0676501
chr14	105295754	105295854	5974302	0	-	0.52	(0.515,0.57]	chr14	568053	90	INTRON	INTRON	BRF1	ENSG00000185024.18	ENST00000547530.7:ENST00000379937.6:ENST00000619151.4:ENST00000327359.7:ENST00000440513.7:ENST00000546417.5:ENST00000550692.1:ENST00000548421.2	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.28921	4.4441749999999995	4.59914	0.00990051	0.00616166	0.0877296	0.0676501
chr15	87651480	87651580	6256069	0	-	0.55	(0.515,0.57]	chr15	596826	1081	INTRON	INTRON	ENSG00000259560	ENSG00000259560.2	ENST00000665121.1:ENST00000560439.1	lncRNA	lncRNA	lncRNA	lncRNA	0	28	2	4.28921	4.4441749999999995	4.59914	0.00990051	0.00616166	0.0877296	0.0676501
chr17	9488131	9488231	6724445	0	-	0.54	(0.515,0.57]	chr17	659716	504	INTRON	INTRON	STX8	ENSG00000170310.15	ENST00000306357.9:ENST00000575858.5:ENST00000574431.5:ENST00000575294.6:ENST00000574775.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	28	2	4.28921	4.4441749999999995	4.59914	0.00990051	0.00616166	0.0877296	0.0676501
chr2	174147098	174147198	1269838	0	-	0.52	(0.515,0.57]	chr2	134282	47	INTRON	INTRON	OLA1	ENSG00000138430.16	ENST00000284719.8:ENST00000344357.9:ENST00000428402.6:ENST00000409546.5:ENST00000429575.1	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.28921	4.4441749999999995	4.59914	0.00990051	0.00616166	0.0877296	0.0676501
chr2	189837167	189837267	953659	0	+	0.53	(0.515,0.57]	chr2	103819	186	INTRON	INTRON	PMS1	ENSG00000064933.19	ENST00000624204.3:ENST00000432292.7:ENST00000418224.7:ENST00000618056.4:ENST00000441310.7:ENST00000342075.8:ENST00000409823.7:ENST00000450931.5:ENST00000421722.5:ENST00000447232.6:ENST00000447734.5:ENST00000424307.5:ENST00000424059.1:ENST00000409593.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	28	2	4.28921	4.4441749999999995	4.59914	0.00990051	0.00616166	0.0877296	0.0676501
chr21	45139002	45139100	7418506	0	+	0.540816	(0.515,0.57]	chr21	756310	18	INTRON	INTRON	ADARB1	ENSG00000197381.17	ENST00000460734.5:ENST00000348831.9:ENST00000389861.7:ENST00000389863.8:ENST00000492414.5:ENST00000496664.5:ENST00000437626.5:ENST00000449478.1:ENST00000464215.2:ENST00000629643.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	28	2	4.28921	4.4441749999999995	4.59914	0.00990051	0.00616166	0.0877296	0.0676501
chr7	105028529	105028628	3374761	0	+	0.535354	(0.515,0.57]	chr7	315854	136	INTRON	INTRON	KMT2E	ENSG00000005483.22	ENST00000622386.2:ENST00000257745.9:ENST00000334884.9:ENST00000311117.8:ENST00000478990.5:ENST00000480368.5:ENST00000495267.5:ENST00000476671.5:ENST00000667857.1:ENST00000474203.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	28	2	4.28921	4.4441749999999995	4.59914	0.00990051	0.00616166	0.0877296	0.0676501
chr16	15024336	15024435	6305645	0	+	0.454545	(0.44,0.476]	chr16	603337	12	INTRON	INTRON	PDXDC1	ENSG00000179889.20	ENST00000563679.5:ENST00000535621.6:ENST00000396410.9:ENST00000455313.6:ENST00000562119.5:ENST00000570001.5:ENST00000569715.5:ENST00000627450.2:ENST00000450288.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	61	2	3.63638	4.444084999999999	5.25179	0.00124521	4.74104e-4	0.0322969	0.0196816
chr14	58279514	58279613	5904555	0	-	0.464646	(0.44,0.476]	chr14	560819	50	INTRON	INTRON	PSMA3-AS1	ENSG00000257621.9	ENST00000554360.5:ENST00000556002.5:ENST00000555275.5:ENST00000554378.5:ENST00000555707.5:ENST00000556400.5:ENST00000557660.5:ENST00000553657.5	lncRNA	lncRNA	lncRNA	lncRNA	1	61	2	3.3111	4.443825	5.57655	0.0020006	3.3967e-4	0.0412555	0.0170719
chr1	162575680	162575779	238460	0	+	0.464646	(0.44,0.476]	chr1	28704	90	INTRON	INTRON	UAP1	ENSG00000117143.14	ENST00000367925.6:ENST00000367926.9	protein_coding	protein_coding	protein_coding	protein_coding	2	87	2	2.91252	4.44379	5.97506	0.00164027	1.26309e-5	0.0369207	0.00264613
chr4	129022130	129022230	2240566	0	-	0.37	(0.35,0.378]	chr4	219291	179	INTRON	INTRON	SCLT1	ENSG00000151466.12	ENST00000651532.1:ENST00000281142.10:ENST00000503215.5:ENST00000439369.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	85	2	3.05367	4.443645	5.83362	7.17897e-4	2.04087e-4	0.0244389	0.0129859
chr1	212072713	212072812	307718	0	+	0.282828	(0.28,0.32]	chr1	35513	1	INTRON	INTRON	DTL	ENSG00000143476.18	ENST00000542077.5:ENST00000366991.5:ENST00000475419.5:ENST00000489149.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	114	2	2.4468	4.44359	6.44038	0.0037095	3.98779e-5	0.0561833	0.00539487
chr12	22520834	22520933	5285184	0	-	0.262626	[0,0.28]	chr12	503594	12	INTRON	INTRON	C2CD5	ENSG00000111731.13	ENST00000333957.8:ENST00000446597.6:ENST00000536386.5:ENST00000396028.6:ENST00000542676.5:ENST00000545552.5:ENST00000541310.5:ENST00000542683.1:ENST00000540703.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	75	2	3.41114	4.44314	5.47514	0.00354561	0.00211753	0.0529186	0.0425644
chr16	14627819	14627907	6449832	0	-	0.375	(0.35,0.378]	chr16	621367	1	EXON_MRNA	EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PARN	ENSG00000140694.17	ENST00000651865.1:ENST00000437198.7:ENST00000651348.1:ENST00000650990.1:ENST00000652541.1:ENST00000652727.1:ENST00000651300.1:ENST00000420015.6:ENST00000652051.1:ENST00000341484.11:ENST00000539279.5:ENST00000651049.1:ENST00000650960.1:ENST00000651634.1:ENST00000564113.6:ENST00000652411.1:ENST00000652501.1:ENST00000651027.1:ENST00000651913.1:ENST00000563641.6:ENST00000651241.1:ENST00000538472.5:ENST00000566021.1:ENST00000562896.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	85	2	2.98607	4.44283	5.89959	9.86191e-4	1.52893e-4	0.0288537	0.0112857
chr14	30951940	30952039	5857125	0	-	0.494949	(0.476,0.515]	chr14	556493	6	INTRON	INTRON	STRN3	ENSG00000196792.12	ENST00000355683.9:ENST00000357479.10:ENST00000555358.5:ENST00000555152.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	83	2	3.38626	4.442465	5.49867	4.28561e-4	1.1754e-4	0.0189958	0.00930356
chr7	102386510	102386610	3371305	0	+	0.47	(0.44,0.476]	chr7	315446	60	INTRON	INTRON	PRKRIP1	ENSG00000128563.13	ENST00000477886.5:ENST00000469763.5:ENST00000482549.5:ENST00000496391.5:ENST00000482465.5:ENST00000462601.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	87	2	2.94373	4.44229	5.94085	0.00143431	1.53199e-5	0.0340925	0.00293868
chr1	35343445	35343545	69037	0	+	0.36	(0.35,0.378]	chr1	8729	177	INTRON	INTRON	ZMYM4	ENSG00000146463.12	ENST00000314607.11:ENST00000441447.1	protein_coding	protein_coding	protein_coding	protein_coding	0	30	2	4.29839	4.44188	4.58537	0.0294717	0.00703328	0.128055	0.0754576
chr1	50573425	50573525	448373	0	-	0.37	(0.35,0.378]	chr1	54195	58	INTRON	INTRON	FAF1	ENSG00000185104.21	ENST00000396153.7:ENST00000494400.5:ENST00000472808.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	30	2	4.29839	4.44188	4.58537	0.0294717	0.00703328	0.128055	0.0754576
chr1	100368993	100369092	172790	0	+	0.363636	(0.35,0.378]	chr1	18804	54	INTRON	INTRON	CDC14A	ENSG00000079335.20	ENST00000646665.1:ENST00000644844.1:ENST00000635056.2:ENST00000647005.1:ENST00000647203.1:ENST00000644676.1:ENST00000361544.11:ENST00000370124.8:ENST00000336454.5:ENST00000646583.1:ENST00000644813.1:ENST00000455467.6:ENST00000646563.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	30	2	4.29839	4.44188	4.58537	0.0294717	0.00703328	0.128055	0.0754576
chr1	144901512	144901612	537839	0	-	0.36	(0.35,0.378]	chr1	63276	38	INTRON	INTRON	SRGAP2B	ENSG00000196369.12	ENST00000612199.4:ENST00000641863.3:ENST00000619678.2:ENST00000621582.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	30	2	4.29839	4.44188	4.58537	0.0294717	0.00703328	0.128055	0.0754576
chr10	73618172	73618271	4651407	0	-	0.363636	(0.35,0.378]	chr10	428104	26	INTRON	INTRON	USP54	ENSG00000166348.20	ENST00000339859.8:ENST00000689425.1:ENST00000685297.1:ENST00000422491.7:ENST00000433394.1:ENST00000474929.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	30	2	4.29839	4.44188	4.58537	0.0294717	0.00703328	0.128055	0.0754576
chr3	87858509	87858609	1455670	0	+	0.37	(0.35,0.378]	chr3	153149	360	INTRON	INTRON	HTR1F	ENSG00000179097.7	ENST00000319595.7	protein_coding	protein_coding	protein_coding	protein_coding	0	30	2	4.29839	4.44188	4.58537	0.0294717	0.00703328	0.128055	0.0754576
chr5	138020940	138021030	2730684	0	-	0.355556	(0.35,0.378]	chr5	257012	3	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	FAM13B	ENSG00000031003.11	ENST00000689681.1:ENST00000033079.7:ENST00000425075.6:ENST00000420893.6:ENST00000514310.5:ENST00000502471.5:ENST00000509596.5:ENST00000508403.5:ENST00000505961.1:ENST00000510804.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	30	2	4.29839	4.44188	4.58537	0.0294717	0.00703328	0.128055	0.0754576
chr7	22666432	22666531	3500043	0	-	0.373737	(0.35,0.378]	chr7	326683	10	INTRON	INTRON	STEAP1B	ENSG00000105889.16	ENST00000650428.1	protein_coding	processed_transcript	protein_coding	processed_transcript	0	30	2	4.29839	4.44188	4.58537	0.0294717	0.00703328	0.128055	0.0754576
chr20	436934	437032	7302965	0	-	0.5	(0.476,0.515]	chr20	743433	16	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TBC1D20	ENSG00000125875.15	ENST00000680792.1:ENST00000354200.5:ENST00000461304.5:ENST00000681539.1:ENST00000679741.1:ENST00000680990.1:ENST00000681129.1:ENST00000681414.1:ENST00000681441.1:ENST00000680088.1:ENST00000680284.1:ENST00000681777.1:ENST00000681389.1:ENST00000679895.1:ENST00000680491.1:ENST00000679451.1:ENST00000679953.1:ENST00000461188.6:ENST00000680815.1:ENST00000680521.1:ENST00000681193.1:ENST00000681551.1:ENST00000679973.1:ENST00000680911.1:ENST00000679944.1:ENST00000681636.1:ENST00000680106.1:ENST00000494633.1:ENST00000680050.1:ENST00000681742.1:ENST00000680515.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	82	2	2.81076	4.44186	6.07296	0.00203568	2.96173e-5	0.0417667	0.00451038
chr19	28654071	28654171	7167636	0	-	0.36	(0.35,0.378]	chr19	724193	1189	INTRON	INTRON	ENSG00000283403	ENSG00000283403.1	ENST00000592347.5	lncRNA	lncRNA	lncRNA	lncRNA	0	30	2	4.40128	4.44156	4.48184	0.0191702	0.0120289	0.108861	0.0962115
chr7	158885772	158885866	3456427	0	+	0.351064	(0.35,0.378]	chr7	323167	8	INTRON	INTRON	DYNC2I1	ENSG00000126870.16	ENST00000407559.8:ENST00000444851.5:ENST00000467220.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	30	2	4.40128	4.44156	4.48184	0.0191702	0.0120289	0.108861	0.0962115
chr17	40401672	40401764	6768194	0	-	0.391304	(0.378,0.408]	chr17	665922	2	INTRON	INTRON	TOP2A	ENSG00000131747.15	ENST00000423485.6	protein_coding	protein_coding	protein_coding	protein_coding	1	63	2	3.76175	4.441515	5.12128	0.00251746	2.68579e-4	0.0446195	0.0145349
chr9	133055405	133055464	4219359	0	+	0.525424	(0.515,0.57]	chr9	387168	2	SS5_PROX	SS5_PROX:INTRON	GTF3C5	ENSG00000148308.18	ENST00000372099.10:ENST00000372097.10:ENST00000342018.12:ENST00000372108.9	protein_coding	protein_coding	protein_coding	protein_coding	1	56	2	3.31388	4.4414750000000005	5.56907	0.00174704	1.36543e-4	0.0386026	0.0106702
chr2	61368525	61368624	1129521	0	-	0.292929	(0.28,0.32]	chr2	121448	175	INTRON	INTRON	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000453133.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	70	2	3.581	4.441265	5.30153	0.00332518	8.63544e-4	0.0512081	0.0266494
chr12	112030153	112030252	5414607	0	-	0.363636	(0.35,0.378]	chr12	517116	1	INTRON	INTRON	NAA25	ENSG00000111300.10	ENST00000261745.9:ENST00000552527.5:ENST00000548181.1:ENST00000549711.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	69	2	3.08431	4.441195	5.79808	0.0065853	5.23926e-5	0.0701901	0.00590498
chr21	46204338	46204438	7470618	0	-	0.28	[0,0.28]	chr21	761464	77	INTRON	INTRON	LSS	ENSG00000160285.15	ENST00000356396.8:ENST00000397728.8:ENST00000457828.6:ENST00000522411.5	protein_coding	protein_coding	protein_coding	protein_coding	2	101	2	2.96015	4.44108	5.92201	0.00161799	8.17983e-4	0.0369252	0.0264086
chr5	157811286	157811384	2758170	0	-	0.5	(0.476,0.515]	chr5	260279	11	INTRON	INTRON	CLINT1	ENSG00000113282.14	ENST00000523094.5:ENST00000411809.7:ENST00000530742.5:ENST00000523908.5	protein_coding	protein_coding	protein_coding	protein_coding	3	97	2	2.86908	4.440785	6.01249	4.03011e-4	4.02459e-5	0.0180338	0.00539487
chr21	10341641	10341736	7427438	0	-	0.294737	(0.28,0.32]	chr21	757681	8	INTRON	INTRON	ENSG00000277693	ENSG00000277693.2	ENST00000622592.1:ENST00000616952.1:ENST00000667012.1	lncRNA	lncRNA	lncRNA	lncRNA	4	131	2	2.2058	4.440675000000001	6.67555	0.00496409	1.30429e-5	0.0646039	0.00286967
chr17	35650229	35650329	6600180	0	+	0.49	(0.476,0.515]	chr17	642301	3	SS3_PROX	SS3_PROX:INTRON	AP2B1	ENSG00000006125.18	ENST00000616784.4:ENST00000621914.4:ENST00000620039.4:ENST00000616681.4:ENST00000621668.4:ENST00000610402.5:ENST00000612035.4:ENST00000614600.4:ENST00000612116.5:ENST00000618940.4:ENST00000619183.1:ENST00000588116.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	65	2	3.05152	4.44007	5.82862	0.0064848	3.00692e-5	0.0699952	0.00436729
chr4	455609	455708	2092735	0	-	0.232323	[0,0.28]	chr4	206783	108	INTRON	INTRON	ABCA11P:ZNF721	ENSG00000251595.7:ENSG00000182903.16	ENST00000451020.6:ENST00000514396.5:ENST00000507854.1:ENST00000515578.5:ENST00000506646.5:ENST00000507078.1:ENST00000511833.3:ENST00000338977.5:ENST00000505900.1	protein_coding	protein_coding	protein_coding:transcribed_processed_pseudogene	protein_coding:nonsense_mediated_decay:processed_transcript	1	75	2	3.18138	4.4400200000000005	5.69866	0.00487606	0.00175225	0.0640618	0.0376491
chr15	66643582	66643682	6051397	0	+	0.54	(0.515,0.57]	chr15	576221	610	INTRON	INTRON	LINC01169	ENSG00000259471.1	ENST00000558797.1	lncRNA	lncRNA	lncRNA	lncRNA	2	78	2	3.0958	4.440005	5.78421	5.63557e-4	1.63043e-5	0.0219303	0.00304426
chr1	183534132	183534232	274145	0	+	0.28	[0,0.28]	chr1	32095	3	SS5_PROX	SS5_PROX:INTRON	SMG7	ENSG00000116698.22	ENST00000367537.7:ENST00000688051.1:ENST00000685780.1:ENST00000508461.5:ENST00000347615.6:ENST00000419169.5:ENST00000507469.5:ENST00000515829.6	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.1879	4.4399049999999995	4.69191	0.0396579	0.0269474	0.161534	0.123442
chr21	5556735	5556834	7364163	0	+	0.252525	[0,0.28]	chr21	751617	25	INTRON	INTRON	ENSG00000274333	ENSG00000274333.4	ENST00000619252.4:ENST00000623449.3:ENST00000624627.3:ENST00000623436.3:ENST00000624368.3:ENST00000623914.3:ENST00000624516.1:ENST00000624412.3:ENST00000622939.3	lncRNA	lncRNA	lncRNA	lncRNA	0	33	2	4.1879	4.4399049999999995	4.69191	0.0396579	0.0269474	0.161534	0.123442
chr4	85605102	85605202	1989793	0	+	0.22	[0,0.28]	chr4	198934	4	INTRON	INTRON	ARHGAP24	ENSG00000138639.18	ENST00000395184.6:ENST00000503995.5:ENST00000506421.5:ENST00000509709.1:ENST00000512201.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	33	2	4.1879	4.4399049999999995	4.69191	0.0396579	0.0269474	0.161534	0.123442
chr6	107930613	107930713	3182571	0	-	0.28	[0,0.28]	chr6	296463	7	INTRON	INTRON	SEC63	ENSG00000025796.14	ENST00000369002.9:ENST00000429168.1:ENST00000484803.5:ENST00000446496.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	33	2	4.1879	4.4399049999999995	4.69191	0.0396579	0.0269474	0.161534	0.123442
chr7	55991227	55991327	3318927	0	+	0.23	[0,0.28]	chr7	308441	60	INTRON	INTRON	NIPSNAP2	ENSG00000146729.10	ENST00000446778.5:ENST00000322090.8:ENST00000437587.5:ENST00000497279.5:ENST00000415967.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	33	2	4.1879	4.4399049999999995	4.69191	0.0396579	0.0269474	0.161534	0.123442
chr8	127824577	127824677	3860347	0	+	0.28	[0,0.28]	chr8	355402	43	INTRON	INTRON	PVT1	ENSG00000249859.13	ENST00000667305.1:ENST00000690350.1:ENST00000653522.1:ENST00000664214.1:ENST00000664139.1:ENST00000661830.1:ENST00000657289.1:ENST00000504719.7:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000656880.1:ENST00000660200.1:ENST00000669132.1:ENST00000657211.1:ENST00000653845.1:ENST00000517525.2:ENST00000665856.1:ENST00000651587.1:ENST00000692980.1:ENST00000666353.1:ENST00000657183.1:ENST00000654324.1:ENST00000658556.1:ENST00000657693.1:ENST00000666080.1:ENST00000667539.1:ENST00000521951.1:ENST00000524165.6:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000664293.1:ENST00000657297.1:ENST00000662410.1:ENST00000670795.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000654091.1:ENST00000523328.6:ENST00000657356.1:ENST00000523427.2:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000662061.1:ENST00000667204.1:ENST00000656491.1:ENST00000667714.1:ENST00000654105.1:ENST00000665721.1:ENST00000518528.2:ENST00000669416.1:ENST00000660438.1:ENST00000661160.1:ENST00000659326.1:ENST00000665246.1:ENST00000657384.1:ENST00000666842.1:ENST00000517790.2:ENST00000522963.6:ENST00000654369.1:ENST00000661625.1:ENST00000657596.1:ENST00000664995.1:ENST00000656532.1:ENST00000661988.1:ENST00000657517.1:ENST00000670714.1:ENST00000669951.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000656693.1:ENST00000668123.1:ENST00000666776.1:ENST00000664299.1:ENST00000669272.1:ENST00000659912.1:ENST00000670532.1:ENST00000660896.1:ENST00000667149.1:ENST00000656396.1:ENST00000523068.2	lncRNA	lncRNA	lncRNA	lncRNA	0	33	2	4.1879	4.4399049999999995	4.69191	0.0396579	0.0269474	0.161534	0.123442
chr19	21095609	21095708	7039651	0	+	0.50505	(0.476,0.515]	chr19	701886	40	INTRON	INTRON	ZNF714	ENSG00000160352.16	ENST00000616183.1:ENST00000596053.5:ENST00000618422.1:ENST00000456283.7:ENST00000613286.4:ENST00000425625.5:ENST00000618008.4:ENST00000610902.4:ENST00000620627.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	31	2	3.97201	4.43981	4.90761	0.030904	0.00386428	0.143385	0.0542786
chr4	139024142	139024242	2049467	0	+	0.48	(0.476,0.515]	chr4	203265	76	INTRON	INTRON	NOCT	ENSG00000151014.6	ENST00000280614.4:ENST00000630479.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	31	2	3.97201	4.43981	4.90761	0.030904	0.00386428	0.143385	0.0542786
chr12	49992755	49992855	5322331	0	-	0.34	(0.32,0.35]	chr12	507329	1	SS3_PROX	SS3_PROX:INTRON	RACGAP1	ENSG00000161800.13	ENST00000312377.10:ENST00000427314.6:ENST00000454520.6:ENST00000551016.5:ENST00000547905.5:ENST00000549342.1	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	3.94529	4.439769999999999	4.93425	0.0693433	0.00281048	0.184298	0.0488779
chr22	28570757	28570857	7571843	0	-	0.33	(0.32,0.35]	chr22	774287	1278	INTRON	INTRON	TTC28	ENSG00000100154.15	ENST00000397906.7	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	3.94529	4.439769999999999	4.93425	0.0693433	0.00281048	0.184298	0.0488779
chr22	40850622	40850722	7590659	0	-	0.35	(0.32,0.35]	chr22	777275	4	SS5_PROX	SS5_PROX:INTRON	ST13	ENSG00000100380.15	ENST00000216218.8:ENST00000455824.1:ENST00000411695.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	32	2	3.94529	4.439769999999999	4.93425	0.0693433	0.00281048	0.184298	0.0488779
chr7	127813665	127813765	3404027	0	+	0.48	(0.476,0.515]	chr7	318140	57	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000468166.5:ENST00000465900.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	65	2	3.53362	4.439755	5.34589	0.00102391	3.224e-4	0.029231300000000002	0.0159645
chr21	43100801	43100895	7468275	0	-	0.319149	(0.28,0.32]	chr21	761116	3	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	U2AF1	ENSG00000160201.12	ENST00000291552.9:ENST00000380276.6:ENST00000464750.5:ENST00000475639.5:ENST00000459639.5:ENST00000486519.5:ENST00000463599.5:ENST00000496462.1:ENST00000468039.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	112	2	2.64424	4.439545	6.23485	0.00159565	1.00183e-4	0.0367961	0.00904854
chr5	6608172	6608268	2566518	0	-	0.541667	(0.515,0.57]	chr5	245907	4	INTRON	INTRON	NSUN2	ENSG00000037474.15	ENST00000264670.11:ENST00000504374.5:ENST00000505892.5:ENST00000506139.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	88	2	2.79572	4.439535	6.08335	5.08572e-4	9.19549e-6	0.0202333	0.00233911
chr2	197489853	197489938	1307064	0	-	0.294118	(0.28,0.32]	chr2	136773	1	EXON_MRNA	EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HSPD1	ENSG00000144381.18	ENST00000388968.8:ENST00000426480.2:ENST00000345042.6:ENST00000452200.6:ENST00000679291.1:ENST00000677403.1:ENST00000678621.1:ENST00000678545.1:ENST00000676933.1:ENST00000678170.1:ENST00000476746.6:ENST00000678969.1:ENST00000428204.6:ENST00000418022.2:ENST00000439605.2:ENST00000440114.2:ENST00000461097.2:ENST00000677792.1:ENST00000678761.1:ENST00000677913.1:ENST00000677454.1:ENST00000491249.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	93	2	2.94244	4.439185	5.93593	0.00144407	3.47635e-4	0.0348397	0.017378
chr4	102307435	102307520	2210223	0	-	0.364706	(0.35,0.378]	chr4	216484	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	SLC39A8	ENSG00000138821.14	ENST00000424970.7:ENST00000682549.1:ENST00000356736.5:ENST00000394833.6:ENST00000683401.1:ENST00000682932.1:ENST00000683173.1:ENST00000682227.1:ENST00000683412.1:ENST00000684289.1:ENST00000683462.1:ENST00000682243.1:ENST00000683916.1:ENST00000683706.1:ENST00000684386.1:ENST00000683634.1:ENST00000683221.1:ENST00000510255.5:ENST00000514000.5:ENST00000512657.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	85	2	3.14947	4.43906	5.72865	4.50721e-4	3.18898e-4	0.0192381	0.016499
chr12	105058915	105059013	5402707	0	-	0.408163	(0.378,0.408]	chr12	515463	3	INTRON	INTRON	ALDH1L2	ENSG00000136010.14	ENST00000549335.5:ENST00000258494.14:ENST00000652515.1:ENST00000552270.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	30	2	4.10661	4.438829999999999	4.77105	0.0399023	0.00330823	0.143072	0.0527031
chr13	102609316	102609416	5532112	0	+	0.38	(0.378,0.408]	chr13	528637	14	INTRON	INTRON	TPP2	ENSG00000134900.12	ENST00000376052.5:ENST00000651448.1:ENST00000376065.8:ENST00000652308.1:ENST00000651544.1:ENST00000651748.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	30	2	4.10661	4.438829999999999	4.77105	0.0399023	0.00330823	0.143072	0.0527031
chr14	21218686	21218785	5834649	0	-	0.393939	(0.378,0.408]	chr14	554424	52	INTRON	INTRON	HNRNPC	ENSG00000092199.19	ENST00000336053.10:ENST00000553300.6:ENST00000554969.5:ENST00000556142.5:ENST00000554455.5:ENST00000430246.6:ENST00000553753.5:ENST00000555309.5:ENST00000555914.5:ENST00000557442.5:ENST00000556628.5:ENST00000556513.5:ENST00000555883.5:ENST00000557201.5:ENST00000556897.5:ENST00000420743.6:ENST00000557157.5:ENST00000554539.5:ENST00000554383.5:ENST00000554417.1:ENST00000555215.5:ENST00000555137.5:ENST00000554891.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	30	2	4.10661	4.438829999999999	4.77105	0.0399023	0.00330823	0.143072	0.0527031
chr16	15620931	15621031	6451478	0	-	0.39	(0.378,0.408]	chr16	621834	4	SS3_PROX	SS3_PROX:INTRON	MARF1	ENSG00000166783.22	ENST00000396368.8:ENST00000540441.6:ENST00000548025.5:ENST00000551742.5:ENST00000552553.5:ENST00000546864.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	30	2	4.10661	4.438829999999999	4.77105	0.0399023	0.00330823	0.143072	0.0527031
chr1	212308095	212308195	308303	0	+	0.32	(0.28,0.32]	chr1	35566	8	INTRON	INTRON	PPP2R5A	ENSG00000066027.12	ENST00000261461.7:ENST00000537030.3:ENST00000498129.6:ENST00000479259.1:ENST00000498123.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	33	2	4.01002	4.438665	4.86731	0.0434868	0.0116253	0.162255	0.0889104
chr18	35587546	35587646	6890074	0	+	0.31	(0.28,0.32]	chr18	682832	53	INTRON	INTRON	GALNT1	ENSG00000141429.14	ENST00000586725.1:ENST00000269195.6:ENST00000591924.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	33	2	4.01002	4.438665	4.86731	0.0434868	0.0116253	0.162255	0.0889104
chr2	105039323	105039423	842949	0	+	0.29	(0.28,0.32]	chr2	94408	7	INTRON	INTRON	MRPS9	ENSG00000135972.9	ENST00000258455.8	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.01002	4.438665	4.86731	0.0434868	0.0116253	0.162255	0.0889104
chr4	89039944	89040044	2202796	0	-	0.3	(0.28,0.32]	chr4	216016	99	INTRON	INTRON	FAM13A	ENSG00000138640.15	ENST00000264344.10:ENST00000511976.5:ENST00000502459.5:ENST00000512339.5:ENST00000509094.5:ENST00000515600.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	33	2	4.01002	4.438665	4.86731	0.0434868	0.0116253	0.162255	0.0889104
chr6	135339882	135339982	3226550	0	-	0.3	(0.28,0.32]	chr6	299946	150	INTRON	INTRON	AHI1	ENSG00000135541.22	ENST00000681022.1:ENST00000681841.1:ENST00000680965.1:ENST00000681522.1:ENST00000681365.1:ENST00000681332.1:ENST00000680826.1:ENST00000679711.1:ENST00000527681.2:ENST00000367800.8:ENST00000265602.11:ENST00000681718.1:ENST00000679672.1:ENST00000681828.1:ENST00000679668.1:ENST00000680840.1:ENST00000457866.6:ENST00000679925.1:ENST00000680561.1:ENST00000679742.1:ENST00000681860.1:ENST00000680119.1:ENST00000680337.1:ENST00000681340.1:ENST00000679589.1:ENST00000679890.1:ENST00000679434.1:ENST00000475846.6:ENST00000679943.1:ENST00000681057.1:ENST00000681301.1:ENST00000681488.1:ENST00000679450.1:ENST00000681756.1:ENST00000681670.1:ENST00000679476.1:ENST00000679622.1:ENST00000367799.7:ENST00000680656.1:ENST00000680278.1:ENST00000680184.1:ENST00000531788.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	33	2	4.01002	4.438665	4.86731	0.0434868	0.0116253	0.162255	0.0889104
chr5	88211774	88211873	2669164	0	-	0.323232	(0.32,0.35]	chr5	252658	42	INTRON	INTRON	TMEM161B	ENSG00000164180.14	ENST00000514135.5:ENST00000296595.11:ENST00000511087.5:ENST00000510089.5:ENST00000506536.5:ENST00000511218.5:ENST00000512429.5:ENST00000507872.1:ENST00000509387.5:ENST00000503755.5:ENST00000513487.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	72	2	3.03597	4.43862	5.84127	0.00832487	6.29724e-5	0.0774402	0.00658818
chr5	131514697	131514797	2717958	0	-	0.33	(0.32,0.35]	chr5	255577	30	INTRON	INTRON	RAPGEF6	ENSG00000158987.22	ENST00000509018.6:ENST00000507093.5:ENST00000296859.10:ENST00000627212.2:ENST00000308008.10:ENST00000515170.5:ENST00000510071.5:ENST00000514179.5:ENST00000513227.5:ENST00000504575.5:ENST00000504039.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	66	2	3.49869	4.43851	5.37833	0.00174321	0.00108004	0.0375363	0.0300133
chr16	68211062	68211160	6371498	0	+	0.326531	(0.32,0.35]	chr16	612252	14	INTRON	INTRON	NFATC3	ENSG00000072736.19	ENST00000563319.5:ENST00000569766.5:ENST00000566301.5:ENST00000575270.5:ENST00000346183.8:ENST00000349223.9:ENST00000329524.8:ENST00000562926.5:ENST00000570212.5:ENST00000563796.5:ENST00000567152.5:ENST00000563288.5:ENST00000535127.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	32	2	4.04364	4.438255	4.83287	0.034181	0.0095071	0.146815	0.0817766
chr5	177816215	177816315	2556705	0	+	0.35	(0.32,0.35]	chr5	244349	63	INTRON	INTRON	ENSG00000170089	ENSG00000170089.16	ENST00000515065.6:ENST00000690558.1:ENST00000693614.1:ENST00000506082.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	32	2	4.04364	4.438255	4.83287	0.034181	0.0095071	0.146815	0.0817766
chr3	197805919	197806019	1597864	0	+	0.47	(0.44,0.476]	chr3	165560	140	INTRON	INTRON	LRCH3	ENSG00000186001.14	ENST00000443727.1:ENST00000438796.6:ENST00000428136.2:ENST00000425562.7:ENST00000441090.6:ENST00000414675.6:ENST00000334859.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	31	2	3.97626	4.43813	4.9	0.0300538	0.00423315	0.142135	0.0572185
chr5	151771213	151771313	2754340	0	-	0.46	(0.44,0.476]	chr5	259796	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ATOX1:ENSG00000275765	ENSG00000177556.12:ENSG00000275765.6	ENST00000524142.5:ENST00000623943.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	0	31	2	3.97626	4.43813	4.9	0.0300538	0.00423315	0.142135	0.0572185
chr7	45106364	45106464	3528904	0	-	0.45	(0.44,0.476]	chr7	329180	7	EXON_MRNA	EXON_MRNA:INTRON	TBRG4	ENSG00000136270.14	ENST00000395655.8:ENST00000361278.7:ENST00000258770.8:ENST00000494076.5:ENST00000495973.5:ENST00000478532.5:ENST00000461363.1:ENST00000477328.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	31	2	3.97626	4.43813	4.9	0.0300538	0.00423315	0.142135	0.0572185
chr9	94822986	94823086	4164011	0	+	0.47	(0.44,0.476]	chr9	379584	216	INTRON	INTRON	AOPEP	ENSG00000148120.18	ENST00000375315.8:ENST00000277198.6:ENST00000297979.9:ENST00000424143.5	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	3.97626	4.43813	4.9	0.0300538	0.00423315	0.142135	0.0572185
chr22	32485409	32485509	7507830	0	+	0.27	[0,0.28]	chr22	766240	2	SS5_PROX	SS5_PROX:INTRON	FBXO7	ENSG00000100225.18	ENST00000420700.5:ENST00000425028.5:ENST00000266087.12:ENST00000492535.1:ENST00000452138.3:ENST00000397426.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	86	2	2.64309	4.437905	6.23272	0.0308646	3.87936e-5	0.13151	0.00503037
chr6	52281644	52281744	3105883	0	-	0.47	(0.44,0.476]	chr6	290814	2	SS5_PROX	SS5_PROX:INTRON	MCM3	ENSG00000112118.20	ENST00000616552.4:ENST00000229854.12:ENST00000596288.7:ENST00000419835.8	protein_coding	protein_coding	protein_coding	protein_coding	2	82	2	2.78129	4.4379	6.09451	0.00229634	3.01924e-5	0.0439319	0.00456171
chr20	45944065	45944165	7280949	0	+	0.39	(0.378,0.408]	chr20	740437	3	SS5_PROX	SS5_PROX:INTRON	PCIF1	ENSG00000100982.12	ENST00000372409.8	protein_coding	protein_coding	protein_coding	protein_coding	0	30	2	4.21226	4.43782	4.66338	0.0177403	0.0103469	0.11319	0.0850389
chr3	125238628	125238728	1805733	0	-	0.38	(0.378,0.408]	chr3	181414	39	INTRON	INTRON	ZNF148	ENSG00000163848.20	ENST00000360647.9:ENST00000468369.5:ENST00000484491.5:ENST00000492394.5:ENST00000485866.5:ENST00000497929.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	30	2	4.21226	4.43782	4.66338	0.0177403	0.0103469	0.11319	0.0850389
chr9	137562945	137563044	4377457	0	-	0.40404	(0.378,0.408]	chr9	403627	58	INTRON	INTRON	DPH7	ENSG00000148399.13	ENST00000277540.7:ENST00000479650.5:ENST00000467243.5:ENST00000497237.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	30	2	4.21226	4.43782	4.66338	0.0177403	0.0103469	0.11319	0.0850389
chr7	105301363	105301462	3603029	0	-	0.727273	(0.57,1]	chr7	336154	27	INTRON	INTRON	SRPK2	ENSG00000135250.17	ENST00000393651.8:ENST00000482897.5:ENST00000460391.5:ENST00000462282.5:ENST00000465112.5:ENST00000482862.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	66	2	2.58898	4.437175	6.28537	0.00134929	5.36563e-8	0.0338207	9.25393e-5
chr7	139077860	139077955	3656097	0	-	0.431579	(0.408,0.44]	chr7	339427	11	INTRON	INTRON	ZC3HAV1	ENSG00000105939.14	ENST00000242351.10:ENST00000464606.5:ENST00000680309.1:ENST00000471652.1:ENST00000460845.5	protein_coding	protein_coding	protein_coding	protein_coding	1	62	2	3.14706	4.437025	5.72699	0.00382411	1.93446e-4	0.0562562	0.0127226
chr2	241652512	241652610	1055617	0	+	0.387755	(0.378,0.408]	chr2	112493	1	INTRON	INTRON	ATG4B	ENSG00000168397.17	ENST00000405546.7:ENST00000402096.5:ENST00000491867.5:ENST00000400772.6:ENST00000494465.5:ENST00000483778.5:ENST00000404914.8:ENST00000465399.5:ENST00000419606.5:ENST00000475195.5:ENST00000479554.5:ENST00000468018.5:ENST00000482507.5:ENST00000493618.5:ENST00000425239.5:ENST00000400771.7:ENST00000415107.5:ENST00000430617.6:ENST00000344376.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	62	2	3.27907	4.436945	5.59482	0.0023379	4.23783e-4	0.0442989	0.0189958
chr4	56450799	56450897	1962772	0	+	0.479592	(0.476,0.515]	chr4	196899	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	PAICS	ENSG00000128050.9	ENST00000514888.5:ENST00000264221.6:ENST00000505164.5:ENST00000399688.7:ENST00000512576.3:ENST00000508554.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	135	2	4.22778	4.43691	4.64604	2.073e-5	3.20331e-6	0.00353137	0.00128034
chr17	40087741	40087841	6608888	0	+	0.46	(0.44,0.476]	chr17	643595	1	SS3_PROX	SS3_PROX:INTRON	THRA	ENSG00000126351.13	ENST00000394121.8:ENST00000584985.5:ENST00000264637.8:ENST00000450525.7:ENST00000546243.5	protein_coding	protein_coding	protein_coding	protein_coding	1	65	2	3.4718	4.43666	5.40152	0.00136358	2.39829e-4	0.0336321	0.0136403
chr1	175984154	175984253	589463	0	-	0.59596	(0.57,1]	chr1	70872	158	INTRON	INTRON	COP1	ENSG00000143207.21	ENST00000367669.8:ENST00000367667.5:ENST00000461830.6:ENST00000367666.5:ENST00000649803.1:ENST00000308769.12	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	23	2	4.16881	4.43654	4.70427	0.00574776	9.25341e-4	0.0681402	0.0278396
chr11	68045302	68045402	4815701	0	+	0.58	(0.57,1]	chr11	448684	2	SS5_PROX	SS5_PROX:PRIMIRNA:INTRON	TCIRG1:MIR6753	ENSG00000110719.10:ENSG00000275022.1	ENST00000265686.8:ENST00000532635.5:ENST00000529364.1:ENST00000525724.5:ENST00000528981.5:ENST00000533005.5:ENST00000617169.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:primary_miRNA	0	23	2	4.16881	4.43654	4.70427	0.00574776	9.25341e-4	0.0681402	0.0278396
chr2	69906073	69906172	805412	0	+	0.59596	(0.57,1]	chr2	89902	6	INTRON	INTRON	MXD1	ENSG00000059728.11	ENST00000435990.5	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	4.16881	4.43654	4.70427	0.00574776	9.25341e-4	0.0681402	0.0278396
chr21	8408772	8408872	7366642	0	+	0.58	(0.57,1]	chr21	751829	2	SS3_PROX	SS3_PROX:INTRON	ENSG00000280441	ENSG00000280441.3	ENST00000623860.3:ENST00000651813.1:ENST00000652379.1	lncRNA	lncRNA	lncRNA	lncRNA	0	23	2	4.16881	4.43654	4.70427	0.00574776	9.25341e-4	0.0681402	0.0278396
chr1	150329260	150329358	221426	0	+	0.510204	(0.476,0.515]	chr1	24976	4	INTRON	INTRON	PRPF3	ENSG00000117360.13	ENST00000496202.5:ENST00000324862.7:ENST00000467329.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	29	2	4.34648	4.43624	4.526	0.0193566	0.00699701	0.108861	0.0754576
chr10	63431828	63431928	4635050	0	-	0.5	(0.476,0.515]	chr10	426236	510	INTRON	INTRON	JMJD1C	ENSG00000171988.20	ENST00000399262.7:ENST00000633035.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	29	2	4.34648	4.43624	4.526	0.0193566	0.00699701	0.108861	0.0754576
chr11	16566026	16566126	4925946	0	-	0.48	(0.476,0.515]	chr11	461242	893	INTRON	INTRON	SOX6	ENSG00000110693.19	ENST00000530378.5:ENST00000533658.5:ENST00000525835.5:ENST00000524520.5:ENST00000525259.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	0	29	2	4.34648	4.43624	4.526	0.0193566	0.00699701	0.108861	0.0754576
chr12	28348839	28348939	5101873	0	+	0.49	(0.476,0.515]	chr12	481970	407	INTRON	INTRON	CCDC91	ENSG00000123106.11	ENST00000540794.5:ENST00000536154.5:ENST00000535520.5:ENST00000539107.5:ENST00000545336.5:ENST00000536442.6:ENST00000543809.5:ENST00000545737.5:ENST00000381259.5:ENST00000540401.5:ENST00000539904.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	29	2	4.34648	4.43624	4.526	0.0193566	0.00699701	0.108861	0.0754576
chr16	30701775	30701874	6338673	0	+	0.484848	(0.476,0.515]	chr16	607723	5	INTRON	INTRON	SRCAP	ENSG00000080603.17	ENST00000411466.6:ENST00000262518.9	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	4.34648	4.43624	4.526	0.0193566	0.00699701	0.108861	0.0754576
chr19	47143111	47143205	7083994	0	+	0.478723	(0.476,0.515]	chr19	708749	1	SS3_PROX	SS3_PROX:INTRON	SAE1	ENSG00000142230.13	ENST00000594144.5:ENST00000594526.5:ENST00000597808.5:ENST00000413379.7:ENST00000600706.5:ENST00000270225.12:ENST00000598840.5:ENST00000414294.6:ENST00000600753.1:ENST00000660039.1:ENST00000664120.1:ENST00000596995.1:ENST00000392776.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	29	2	4.34648	4.43624	4.526	0.0193566	0.00699701	0.108861	0.0754576
chr22	49788387	49788485	7602824	0	-	0.510204	(0.476,0.515]	chr22	778629	1	INTRON	INTRON	BRD1	ENSG00000100425.19	ENST00000404760.6:ENST00000404034.5:ENST00000216267.12:ENST00000438393.5:ENST00000457780.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	29	2	4.34648	4.43624	4.526	0.0193566	0.00699701	0.108861	0.0754576
chr7	158950014	158950114	3457097	0	+	0.49	(0.476,0.515]	chr7	323276	38	INTRON	INTRON	DYNC2I1	ENSG00000126870.16	ENST00000454771.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	0	29	2	4.34648	4.43624	4.526	0.0193566	0.00699701	0.108861	0.0754576
chr9	136921615	136921715	4222549	0	+	0.5	(0.476,0.515]	chr9	387848	4	SS5_PROX	SS5_PROX:INTRON	TRAF2	ENSG00000127191.18	ENST00000247668.7:ENST00000466107.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	29	2	4.34648	4.43624	4.526	0.0193566	0.00699701	0.108861	0.0754576
chr11	68067502	68067599	4972049	0	-	0.494845	(0.476,0.515]	chr11	469395	6	INTRON	INTRON	CHKA	ENSG00000110721.12	ENST00000265689.9:ENST00000356135.9:ENST00000533910.5:ENST00000528235.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	29	2	4.43093	4.4361049999999995	4.44128	0.0151924	0.00931369	0.0994339	0.0855292
chr14	69615418	69615518	5775746	0	+	0.48	(0.476,0.515]	chr14	547297	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	SUSD6	ENSG00000100647.8	ENST00000342745.5:ENST00000553497.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	29	2	4.43093	4.4361049999999995	4.44128	0.0151924	0.00931369	0.0994339	0.0855292
chr16	11903522	11903622	6446286	0	-	0.49	(0.476,0.515]	chr16	621128	51	INTRON	INTRON	GSPT1	ENSG00000103342.13	ENST00000434724.7:ENST00000439887.6:ENST00000420576.6:ENST00000568849.5:ENST00000562169.1	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	4.43093	4.4361049999999995	4.44128	0.0151924	0.00931369	0.0994339	0.0855292
chr21	37126936	37127034	7405384	0	+	0.5	(0.476,0.515]	chr21	754627	4	INTRON	INTRON	TTC3	ENSG00000182670.14	ENST00000492275.6:ENST00000418766.6:ENST00000485402.5:ENST00000450533.6:ENST00000438055.5:ENST00000696812.1:ENST00000696811.1:ENST00000463216.6:ENST00000481605.6:ENST00000540756.5:ENST00000494243.5:ENST00000411496.2:ENST00000399017.6:ENST00000354749.6:ENST00000479930.5:ENST00000476784.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	29	2	4.43093	4.4361049999999995	4.44128	0.0151924	0.00931369	0.0994339	0.0855292
chr22	37808663	37808761	7511577	0	+	0.5	(0.476,0.515]	chr22	767102	1	INTRON	INTRON	GCAT	ENSG00000100116.17	ENST00000323205.10:ENST00000445195.5:ENST00000415371.1:ENST00000248924.11:ENST00000478203.1:ENST00000426858.1:ENST00000451984.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	29	2	4.43093	4.4361049999999995	4.44128	0.0151924	0.00931369	0.0994339	0.0855292
chr3	134176809	134176899	1822912	0	-	0.5	(0.476,0.515]	chr3	183425	4	INTRON	INTRON	RYK	ENSG00000163785.13	ENST00000484106.3:ENST00000623711.4:ENST00000460933.5:ENST00000620660.4:ENST00000473208.5:ENST00000486725.1:ENST00000481382.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	29	2	4.43093	4.4361049999999995	4.44128	0.0151924	0.00931369	0.0994339	0.0855292
chr7	99430883	99430979	3583474	0	-	0.510417	(0.476,0.515]	chr7	333788	7	INTRON	INTRON	PTCD1:ATP5MF-PTCD1	ENSG00000106246.18:ENSG00000248919.7	ENST00000292478.9:ENST00000413834.5:ENST00000485746.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	29	2	4.43093	4.4361049999999995	4.44128	0.0151924	0.00931369	0.0994339	0.0855292
chr6	157383365	157383465	3011564	0	+	0.36	(0.35,0.378]	chr6	281268	7	INTRON	INTRON	ZDHHC14	ENSG00000175048.17	ENST00000414563.6:ENST00000359775.10	protein_coding	protein_coding	protein_coding	protein_coding	2	85	2	3.18004	4.4359649999999995	5.69189	3.8703e-4	3.71413e-4	0.0178698	0.0177751
chr1	246988854	246988953	682405	0	-	0.50505	(0.476,0.515]	chr1	80079	2	INTRON	INTRON	ZNF670-ZNF695:ZNF695	ENSG00000135747.11:ENSG00000197472.15	ENST00000465049.6:ENST00000479214.5:ENST00000366504.6:ENST00000491337.6:ENST00000487338.6:ENST00000498046.2:ENST00000474541.1:ENST00000339986.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	30	2	4.01777	4.435779999999999	4.85379	0.0411361	0.00234214	0.1451	0.0442989
chr17	63582632	63582729	6659978	0	+	0.484536	(0.476,0.515]	chr17	649782	20	EXON_MRNA	EXON_MRNA:INTRON	DCAF7	ENSG00000136485.16	ENST00000431926.7:ENST00000690417.1:ENST00000688972.1:ENST00000686337.1:ENST00000614556.5:ENST00000690481.1:ENST00000693226.1:ENST00000686787.1:ENST00000691063.1:ENST00000415273.2:ENST00000688437.1:ENST00000615512.2:ENST00000688888.1:ENST00000691458.1:ENST00000692877.1:ENST00000688721.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	30	2	4.01777	4.435779999999999	4.85379	0.0411361	0.00234214	0.1451	0.0442989
chr8	38171600	38171688	3936131	0	-	0.477273	(0.476,0.515]	chr8	360637	2	SS5_PROX	SS5_PROX:INTRON	LSM1	ENSG00000175324.10	ENST00000520755.5:ENST00000311351.9:ENST00000522515.5:ENST00000520286.5:ENST00000523511.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	30	2	4.01777	4.435779999999999	4.85379	0.0411361	0.00234214	0.1451	0.0442989
chr8	52702413	52702513	3950988	0	-	0.5	(0.476,0.515]	chr8	362390	151	INTRON	INTRON	RB1CC1	ENSG00000023287.13	ENST00000025008.10:ENST00000435644.6:ENST00000521611.1:ENST00000518710.5:ENST00000517963.1:ENST00000518211.1:ENST00000518468.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	30	2	4.01777	4.435779999999999	4.85379	0.0411361	0.00234214	0.1451	0.0442989
chr19	45788006	45788103	7193295	0	-	0.484536	(0.476,0.515]	chr19	728503	4	INTRON	INTRON	DMWD	ENSG00000185800.12	ENST00000270223.7:ENST00000377735.7:ENST00000601370.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	61	2	3.2463	4.43576	5.62522	0.00262374	2.4907e-4	0.0470772	0.0145812
chr7	129608238	129608337	3636623	0	-	0.525253	(0.515,0.57]	chr7	338154	38	EXON_LNCRNA	EXON_LNCRNA	ENSG00000273329	ENSG00000273329.1	ENST00000608694.1	lncRNA	lncRNA	lncRNA	lncRNA	1	63	2	3.94608	4.435405	4.92473	0.00108255	1.08342e-4	0.0300133	0.00933805
chr10	119067358	119067457	4704787	0	-	0.474747	(0.44,0.476]	chr10	433990	14	INTRON	INTRON	EIF3A	ENSG00000107581.13	ENST00000369144.8:ENST00000541549.2	protein_coding	protein_coding	protein_coding	protein_coding	1	67	2	2.86231	4.43539	6.00847	0.012214	1.04381e-5	0.0910127	0.00235341
chr19	45180702	45180802	7079624	0	+	0.54	(0.515,0.57]	chr19	708129	9	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	BLOC1S3	ENSG00000189114.8	ENST00000433642.3:ENST00000592910.1:ENST00000593083.1:ENST00000588362.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	58	2	3.05839	4.43529	5.81219	0.00485936	4.05175e-5	0.0640618	0.00539487
chrX	54565692	54565791	7664970	0	+	0.282828	(0.28,0.32]	chrX	784797	52	UTR3	UTR3:EXON_MRNA:INTRON	GNL3L	ENSG00000130119.17	ENST00000674498.1:ENST00000360845.3	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	3.88145	4.435085	4.98872	0.0561985	0.00838468	0.18407	0.0774402
chr16	81037598	81037698	6404114	0	+	0.41	(0.408,0.44]	chr16	614936	1	SS5_PROX	SS5_PROX:INTRON	ATMIN	ENSG00000166454.10	ENST00000299575.5:ENST00000562969.1:ENST00000539819.5:ENST00000564241.5:ENST00000565237.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	61	2	3.25948	4.43508	5.61068	0.00246454	3.21002e-4	0.0459102	0.0165409
chr19	1973696	1973794	6996079	0	+	0.428571	(0.408,0.44]	chr19	693383	34	INTRON	INTRON	CSNK1G2	ENSG00000133275.16	ENST00000255641.13:ENST00000591752.5:ENST00000589350.2:ENST00000589385.5	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	3.97679	4.43503	4.89327	0.0299485	0.00458906	0.142135	0.0595107
chr4	183188599	183188699	2084674	0	+	0.41	(0.408,0.44]	chr4	205959	886	INTRON	INTRON	WWC2	ENSG00000151718.16	ENST00000403733.8:ENST00000508614.5:ENST00000448232.6:ENST00000513834.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	31	2	3.97679	4.43503	4.89327	0.0299485	0.00458906	0.142135	0.0595107
chr6	31859031	31859129	3079952	0	-	0.428571	(0.408,0.44]	chr6	287279	15	UTR3	UTR3:EXON_MRNA	NEU1	ENSG00000204386.12	ENST00000375631.5:ENST00000495807.1:ENST00000491768.5:ENST00000480384.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	31	2	3.97679	4.43503	4.89327	0.0299485	0.00458906	0.142135	0.0595107
chr6	156986043	156986143	3009253	0	+	0.43	(0.408,0.44]	chr6	281130	5	INTRON	INTRON	ARID1B	ENSG00000049618.24	ENST00000346085.10:ENST00000636930.2:ENST00000647938.1:ENST00000350026.10:ENST00000674298.1:ENST00000674190.1:ENST00000414678.7:ENST00000319584.11:ENST00000452544.2:ENST00000637887.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	31	2	3.97679	4.43503	4.89327	0.0299485	0.00458906	0.142135	0.0595107
chr16	88965766	88965866	6541185	0	-	0.45	(0.44,0.476]	chr16	634108	81	INTRON	INTRON	CBFA2T3	ENSG00000129993.15	ENST00000268679.9:ENST00000563640.1	protein_coding	protein_coding	protein_coding	protein_coding	2	81	2	3.25222	4.43486	5.6175	2.84938e-4	2.39476e-4	0.015495	0.0136403
chr2	97137270	97137370	831087	0	+	0.45	(0.44,0.476]	chr2	92964	98	INTRON	INTRON	ANKRD36	ENSG00000135976.21	ENST00000420699.9:ENST00000652721.1:ENST00000461153.7	protein_coding	protein_coding	protein_coding	protein_coding	2	81	2	3.25222	4.43486	5.6175	2.84938e-4	2.39476e-4	0.015495	0.0136403
chr12	122514772	122514855	5442125	0	-	0.277108	[0,0.28]	chr12	520564	1	EXON_MRNA	EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RSRC2	ENSG00000111011.18	ENST00000331738.12:ENST00000532695.5:ENST00000433877.6:ENST00000527173.6:ENST00000525335.6:ENST00000344591.8:ENST00000528263.1:ENST00000527399.3:ENST00000524399.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	153	2	3.07102	4.43483	5.79864	0.00125481	1.04921e-4	0.0323608	0.00863456
chr1	27483789	27483889	406701	0	-	0.49	(0.476,0.515]	chr1	48986	545	INTRON	INTRON	WASF2	ENSG00000158195.11	ENST00000618852.5:ENST00000536657.1	protein_coding	protein_coding	protein_coding	protein_coding	0	30	2	4.10113	4.4347	4.76827	0.0226984	0.00600704	0.124921	0.0674604
chr10	68519110	68519209	4640200	0	-	0.484848	(0.476,0.515]	chr10	426805	10	INTRON	INTRON	SLC25A16	ENSG00000122912.15	ENST00000609923.6:ENST00000493963.5:ENST00000491102.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	30	2	4.10113	4.4347	4.76827	0.0226984	0.00600704	0.124921	0.0674604
chr11	57306029	57306128	4952698	0	-	0.515152	(0.476,0.515]	chr11	464753	27	INTRON	INTRON	TNKS1BP1	ENSG00000149115.14	ENST00000528882.5:ENST00000358252.8:ENST00000532437.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	30	2	4.10113	4.4347	4.76827	0.0226984	0.00600704	0.124921	0.0674604
chr17	57531821	57531921	6635517	0	+	0.48	(0.476,0.515]	chr17	648072	17	INTRON	INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000674961.1:ENST00000582453.5:ENST00000675656.1:ENST00000322684.7:ENST00000442934.6:ENST00000579180.2:ENST00000579205.5:ENST00000579505.5:ENST00000582772.1:ENST00000674898.1:ENST00000674574.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	30	2	4.10113	4.4347	4.76827	0.0226984	0.00600704	0.124921	0.0674604
chr3	45531473	45531573	1415472	0	+	0.48	(0.476,0.515]	chr3	148569	70	INTRON	INTRON	LARS2	ENSG00000011376.12	ENST00000650792.2:ENST00000414984.5:ENST00000265537.8:ENST00000645846.2:ENST00000651549.1:ENST00000652135.1:ENST00000642274.1:ENST00000467936.5:ENST00000485461.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	30	2	4.10113	4.4347	4.76827	0.0226984	0.00600704	0.124921	0.0674604
chr6	107175147	107175247	3179062	0	-	0.49	(0.476,0.515]	chr6	296301	200	INTRON	INTRON	PDSS2	ENSG00000164494.12	ENST00000369037.9	protein_coding	protein_coding	protein_coding	protein_coding	0	30	2	4.10113	4.4347	4.76827	0.0226984	0.00600704	0.124921	0.0674604
chr8	22618063	22618156	3714504	0	+	0.483871	(0.476,0.515]	chr8	345042	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CCAR2	ENSG00000158941.17	ENST00000308511.9:ENST00000389279.7:ENST00000520861.5:ENST00000520738.5:ENST00000521436.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	30	2	4.10113	4.4347	4.76827	0.0226984	0.00600704	0.124921	0.0674604
chr12	51008144	51008226	5324607	0	-	0.47561	(0.44,0.476]	chr12	507724	1	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	SLC11A2	ENSG00000110911.17	ENST00000547688.7:ENST00000644495.1:ENST00000643884.1:ENST00000546636.5:ENST00000547198.5:ENST00000394904.9:ENST00000262052.9:ENST00000643123.1:ENST00000646740.1:ENST00000642227.1:ENST00000541174.6:ENST00000545993.7:ENST00000546743.5:ENST00000547510.5:ENST00000546488.5:ENST00000547579.5:ENST00000550714.5:ENST00000547732.5:ENST00000548193.5:ENST00000646988.1:ENST00000549625.1:ENST00000549193.5:ENST00000681324.1:ENST00000550995.5:ENST00000550329.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	29	2	4.33899	4.434665	4.53034	0.0206616	0.00672609	0.110999	0.0738715
chr13	114073419	114073519	5654279	0	-	0.46	(0.44,0.476]	chr13	538948	3	SS5_PROX	SS5_PROX:INTRON	RASA3	ENSG00000185989.11	ENST00000334062.8	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	4.33899	4.434665	4.53034	0.0206616	0.00672609	0.110999	0.0738715
chr16	84666099	84666198	6409881	0	+	0.474747	(0.44,0.476]	chr16	615249	41	UTR3	UTR3:EXON_MRNA	KLHL36	ENSG00000135686.13	ENST00000564996.6:ENST00000325279.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	29	2	4.33899	4.434665	4.53034	0.0206616	0.00672609	0.110999	0.0738715
chr2	61305248	61305348	1128867	0	-	0.47	(0.44,0.476]	chr2	121356	34	INTRON	INTRON	USP34	ENSG00000115464.15	ENST00000398571.7	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	4.33899	4.434665	4.53034	0.0206616	0.00672609	0.110999	0.0738715
chr2	240589883	240589976	1052922	0	+	0.462366	(0.44,0.476]	chr2	112029	1	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	CAPN10	ENSG00000142330.20	ENST00000391984.7:ENST00000404753.7:ENST00000270364.11:ENST00000391983.7:ENST00000270361.15:ENST00000352879.8:ENST00000354082.8:ENST00000357048.8:ENST00000416591.5:ENST00000494738.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	29	2	4.33899	4.434665	4.53034	0.0206616	0.00672609	0.110999	0.0738715
chr3	170151607	170151706	1861528	0	-	0.444444	(0.44,0.476]	chr3	186655	5	INTRON	INTRON	PHC3	ENSG00000173889.16	ENST00000495893.7:ENST00000494943.5:ENST00000467570.5:ENST00000484931.5:ENST00000479467.5:ENST00000466189.5:ENST00000475729.5:ENST00000474275.5:ENST00000472330.5:ENST00000465896.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	29	2	4.33899	4.434665	4.53034	0.0206616	0.00672609	0.110999	0.0738715
chr3	179361657	179361757	1567071	0	+	0.46	(0.44,0.476]	chr3	162085	14	INTRON	INTRON	MFN1	ENSG00000171109.19	ENST00000471841.6:ENST00000357390.8:ENST00000467174.6:ENST00000263969.9:ENST00000489329.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	29	2	4.33899	4.434665	4.53034	0.0206616	0.00672609	0.110999	0.0738715
chr4	25789359	25789458	2119881	0	-	0.454545	(0.44,0.476]	chr4	209410	6	INTRON	INTRON	SEL1L3	ENSG00000091490.11	ENST00000264868.9:ENST00000399878.8:ENST00000502949.5	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	4.33899	4.434665	4.53034	0.0206616	0.00672609	0.110999	0.0738715
chr4	67722017	67722117	1965295	0	+	0.46	(0.44,0.476]	chr4	197308	17	EXON_LNCRNA	EXON_LNCRNA:INTRON	UBA6-DT	ENSG00000248049.8	ENST00000660649.1:ENST00000654961.1:ENST00000656992.1:ENST00000500538.7:ENST00000498917.2:ENST00000665294.1:ENST00000693410.1:ENST00000667140.1:ENST00000666396.1:ENST00000506606.1:ENST00000664183.1:ENST00000663060.1:ENST00000660972.1:ENST00000665498.1	lncRNA	lncRNA	lncRNA	lncRNA	0	29	2	4.33899	4.434665	4.53034	0.0206616	0.00672609	0.110999	0.0738715
chr6	111287204	111287304	2940058	0	+	0.45	(0.44,0.476]	chr6	276924	73	INTRON	INTRON	MFSD4B	ENSG00000173214.7	ENST00000673446.1:ENST00000673245.1:ENST00000666581.2	protein_coding	processed_transcript	protein_coding	processed_transcript	0	29	2	4.33899	4.434665	4.53034	0.0206616	0.00672609	0.110999	0.0738715
chr13	114284979	114285076	5550860	0	+	0.402062	(0.378,0.408]	chr13	530559	14	INTRON	INTRON	UPF3A	ENSG00000169062.15	ENST00000375299.8:ENST00000351487.5:ENST00000484246.5:ENST00000480362.5:ENST00000474056.5:ENST00000493727.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	184	2	3.97046	4.434565	4.89867	3.43497e-6	9.5766e-7	0.00120545	6.06868e-4
chr1	162591011	162591104	238619	0	+	0.473118	(0.44,0.476]	chr1	28740	1	INTRON	INTRON	UAP1	ENSG00000117143.14	ENST00000367925.6:ENST00000367926.9	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	4.43377	4.4345099999999995	4.43525	0.0162803	0.00897296	0.101453	0.0849778
chr10	87143854	87143954	4481731	0	+	0.46	(0.44,0.476]	chr10	412411	465	INTRON	INTRON	SHLD2	ENSG00000122376.12	ENST00000437629.6:ENST00000298784.5:ENST00000298786.5	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	4.43377	4.4345099999999995	4.43525	0.0162803	0.00897296	0.101453	0.0849778
chr11	67373615	67373715	4814813	0	+	0.45	(0.44,0.476]	chr11	448377	519	INTRON	INTRON	RAD9A	ENSG00000172613.8	ENST00000622583.4	protein_coding	processed_transcript	protein_coding	processed_transcript	0	29	2	4.43377	4.4345099999999995	4.43525	0.0162803	0.00897296	0.101453	0.0849778
chr12	27796746	27796846	5099626	0	+	0.46	(0.44,0.476]	chr12	481862	1	SS3_PROX	SS3_PROX:INTRON	KLHL42	ENSG00000087448.11	ENST00000539176.1:ENST00000381271.7:ENST00000649445.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	29	2	4.43377	4.4345099999999995	4.43525	0.0162803	0.00897296	0.101453	0.0849778
chr12	68822726	68822820	5163128	0	+	0.468085	(0.44,0.476]	chr12	488916	15	INTRON	INTRON	MDM2	ENSG00000135679.27	ENST00000258149.11:ENST00000393412.7:ENST00000311420.13:ENST00000393417.8:ENST00000258148.11:ENST00000539479.6:ENST00000523991.5:ENST00000543323.5:ENST00000393415.7:ENST00000393416.7:ENST00000481186.6:ENST00000545204.2:ENST00000544561.6:ENST00000665020.1:ENST00000666617.1:ENST00000671567.1:ENST00000393410.5:ENST00000496959.5:ENST00000299252.8:ENST00000360430.6:ENST00000517852.5:ENST00000546048.5:ENST00000540352.5:ENST00000542502.5:ENST00000537182.5:ENST00000536089.5:ENST00000393413.7:ENST00000350057.9:ENST00000348801.7:ENST00000478070.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	29	2	4.43377	4.4345099999999995	4.43525	0.0162803	0.00897296	0.101453	0.0849778
chr13	32370756	32370855	5464993	0	+	0.444444	(0.44,0.476]	chr13	523644	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	BRCA2	ENSG00000139618.17	ENST00000544455.6:ENST00000380152.8:ENST00000680887.1:ENST00000614259.2:ENST00000665585.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	29	2	4.43377	4.4345099999999995	4.43525	0.0162803	0.00897296	0.101453	0.0849778
chr2	86117754	86117849	822494	0	+	0.473684	(0.44,0.476]	chr2	91765	2	INTRON	INTRON	PTCD3	ENSG00000132300.19	ENST00000465560.5:ENST00000409783.6:ENST00000254630.12:ENST00000483925.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	29	2	4.43377	4.4345099999999995	4.43525	0.0162803	0.00897296	0.101453	0.0849778
chr4	76996839	76996939	1976633	0	+	0.46	(0.44,0.476]	chr4	198169	3	SS5_PROX	SS5_PROX:INTRON	SEPTIN11	ENSG00000138758.12	ENST00000502584.5:ENST00000264893.11:ENST00000510641.5:ENST00000505788.5:ENST00000512575.5:ENST00000510515.5:ENST00000504637.5:ENST00000512778.1:ENST00000512333.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	29	2	4.43377	4.4345099999999995	4.43525	0.0162803	0.00897296	0.101453	0.0849778
chr5	134805647	134805747	2490868	0	+	0.46	(0.44,0.476]	chr5	237970	91	INTRON	INTRON	DDX46	ENSG00000145833.16	ENST00000452510.7:ENST00000507392.5:ENST00000354283.8:ENST00000503946.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	29	2	4.43377	4.4345099999999995	4.43525	0.0162803	0.00897296	0.101453	0.0849778
chr6	149774967	149775067	2996297	0	+	0.47	(0.44,0.476]	chr6	280374	14	INTRON	INTRON	PCMT1	ENSG00000120265.19	ENST00000367384.7:ENST00000367378.6:ENST00000484601.6:ENST00000367380.9:ENST00000544496.5:ENST00000649295.1:ENST00000494411.6:ENST00000464889.7:ENST00000486585.2:ENST00000495487.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	29	2	4.43377	4.4345099999999995	4.43525	0.0162803	0.00897296	0.101453	0.0849778
chr1	44757055	44757155	92492	0	+	0.46	(0.44,0.476]	chr1	12300	1	SS3_PROX	SS3_PROX:INTRON	KIF2C	ENSG00000142945.13	ENST00000452259.5:ENST00000493027.5:ENST00000372224.9:ENST00000372217.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	30	2	4.01038	4.4342749999999995	4.85817	0.0433743	0.00223254	0.148082	0.0435144
chr16	22530146	22530245	6322925	0	+	0.464646	(0.44,0.476]	chr16	605497	18	INTRON	INTRON	NPIPB5	ENSG00000243716.11	ENST00000415654.5:ENST00000415833.6:ENST00000424340.6:ENST00000521555.6:ENST00000517539.5:ENST00000541664.5:ENST00000528249.5:ENST00000543997.1:ENST00000539604.5:ENST00000621622.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	30	2	4.01038	4.4342749999999995	4.85817	0.0433743	0.00223254	0.148082	0.0435144
chr16	87351833	87351933	6537507	0	-	0.45	(0.44,0.476]	chr16	633414	42	INTRON	INTRON	FBXO31	ENSG00000103264.18	ENST00000311635.12:ENST00000565593.1:ENST00000618298.6:ENST00000636077.1:ENST00000561664.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	30	2	4.01038	4.4342749999999995	4.85817	0.0433743	0.00223254	0.148082	0.0435144
chr5	149550466	149550550	2751077	0	-	0.333333	(0.32,0.35]	chr5	259092	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CSNK1A1	ENSG00000113712.19	ENST00000261798.10:ENST00000377843.8:ENST00000657001.1:ENST00000515768.6:ENST00000606719.6:ENST00000657462.1:ENST00000661952.1:ENST00000662268.1:ENST00000657706.1:ENST00000670598.1:ENST00000523203.5:ENST00000515748.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	72	2	2.99125	4.433765	5.87628	0.00958447	5.28936e-5	0.0820838	0.00592337
chr1	52551830	52551930	458558	0	-	0.36	(0.35,0.378]	chr1	55111	128	INTRON	INTRON	TUT4	ENSG00000134744.14	ENST00000371544.7:ENST00000257177.9:ENST00000528642.5:ENST00000484723.6:ENST00000473856.5:ENST00000355809.4:ENST00000470626.1:ENST00000524582.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	32	2	3.94291	4.43323	4.92355	0.0374229	0.00573514	0.155878	0.0657377
chr1	55206698	55206798	465818	0	-	0.37	(0.35,0.378]	chr1	56290	282	INTRON	INTRON	USP24	ENSG00000162402.14	ENST00000294383.7	protein_coding	protein_coding	protein_coding	protein_coding	0	30	2	4.1971	4.4331949999999996	4.66929	0.0367539	0.00541617	0.138959	0.066545000000000007
chr15	55186464	55186558	6179907	0	-	0.37234	(0.35,0.378]	chr15	589062	12	EXON_MRNA	EXON_MRNA:INTRON	RSL24D1	ENSG00000137876.11	ENST00000260443.9:ENST00000569386.2:ENST00000677172.1:ENST00000677147.1:ENST00000562895.2:ENST00000677989.1:ENST00000677730.1:ENST00000677092.1:ENST00000677267.1:ENST00000562993.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	30	2	4.1971	4.4331949999999996	4.66929	0.0367539	0.00541617	0.138959	0.066545000000000007
chr15	55316212	55316309	6181175	0	-	0.360825	(0.35,0.378]	chr15	589183	17	INTRON	INTRON	RAB27A	ENSG00000069974.16	ENST00000563262.5:ENST00000561545.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	30	2	4.1971	4.4331949999999996	4.66929	0.0367539	0.00541617	0.138959	0.066545000000000007
chr2	174138638	174138737	1269752	0	-	0.373737	(0.35,0.378]	chr2	134275	145	INTRON	INTRON	OLA1	ENSG00000138430.16	ENST00000284719.8:ENST00000344357.9:ENST00000428402.6:ENST00000409546.5:ENST00000429575.1	protein_coding	protein_coding	protein_coding	protein_coding	0	30	2	4.1971	4.4331949999999996	4.66929	0.0367539	0.00541617	0.138959	0.066545000000000007
chr22	50373645	50373745	7544493	0	+	0.36	(0.35,0.378]	chr22	771021	11	INTRON	INTRON	PPP6R2	ENSG00000100239.16	ENST00000359139.7:ENST00000395741.7:ENST00000612753.5:ENST00000395744.7:ENST00000216061.9	protein_coding	protein_coding	protein_coding	protein_coding	0	30	2	4.1971	4.4331949999999996	4.66929	0.0367539	0.00541617	0.138959	0.066545000000000007
chr5	62492505	62492604	2363820	0	+	0.373737	(0.35,0.378]	chr5	227939	19	INTRON	INTRON	IPO11	ENSG00000086200.17	ENST00000424533.5:ENST00000325324.11:ENST00000409296.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	30	2	4.1971	4.4331949999999996	4.66929	0.0367539	0.00541617	0.138959	0.066545000000000007
chr7	16263703	16263802	3491873	0	-	0.353535	(0.35,0.378]	chr7	326197	43	INTRON	INTRON	CRPPA	ENSG00000214960.11	ENST00000407010.7:ENST00000399310.3:ENST00000676325.1:ENST00000675257.1:ENST00000674759.1	protein_coding	protein_coding	protein_coding	protein_coding	0	30	2	4.1971	4.4331949999999996	4.66929	0.0367539	0.00541617	0.138959	0.066545000000000007
chr7	64337077	64337172	3319673	0	+	0.368421	(0.35,0.378]	chr7	308634	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	ZNF736	ENSG00000234444.10	ENST00000355095.8:ENST00000423484.3:ENST00000488621.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	30	2	4.1971	4.4331949999999996	4.66929	0.0367539	0.00541617	0.138959	0.066545000000000007
chr22	50191738	50191837	7543921	0	+	0.434343	(0.408,0.44]	chr22	770929	7	INTRON	INTRON	TRABD	ENSG00000170638.10	ENST00000380909.9:ENST00000303434.8:ENST00000463233.1:ENST00000395827.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	87	2	2.85723	4.433135	6.00904	0.00211413	1.03233e-5	0.0415897	0.00235018
chr12	104580747	104580847	5211922	0	+	0.45	(0.44,0.476]	chr12	493317	274	INTRON	INTRON	CHST11	ENSG00000171310.11	ENST00000303694.6:ENST00000547956.1:ENST00000549260.5:ENST00000546689.1	protein_coding	protein_coding	protein_coding	protein_coding	0	30	2	4.1054	4.43304	4.76068	0.0220205	0.00653414	0.123836	0.0699952
chrX	153960514	153960614	7912084	0	-	0.31	(0.28,0.32]	chrX	805486	1	SS3_PROX	SS3_PROX:INTRON	HCFC1	ENSG00000172534.14	ENST00000310441.12:ENST00000369984.4:ENST00000461098.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	93	2	3.0891	4.43278	5.77646	7.51507e-4	6.44045e-4	0.0251578	0.0231685
chr10	86513984	86514083	4659287	0	-	0.363636	(0.35,0.378]	chr10	429294	129	INTRON	INTRON	WAPL	ENSG00000062650.20	ENST00000298767.10	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	3.97032	4.4327749999999995	4.89523	0.0578667	0.00253947	0.167723	0.0465056
chr10	91954470	91954567	4489039	0	+	0.371134	(0.35,0.378]	chr10	413318	2	INTRON	INTRON	BTAF1	ENSG00000095564.15	ENST00000265990.12	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	3.97032	4.4327749999999995	4.89523	0.0578667	0.00253947	0.167723	0.0465056
chr8	94865244	94865324	3800557	0	+	0.3625	(0.35,0.378]	chr8	352422	1	SS3_PROX	SS3_PROX:INTRON	INTS8	ENSG00000164941.14	ENST00000523731.6:ENST00000524333.5:ENST00000343161.8:ENST00000523206.5:ENST00000520526.5:ENST00000520845.5:ENST00000520315.5:ENST00000517918.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	31	2	3.97032	4.4327749999999995	4.89523	0.0578667	0.00253947	0.167723	0.0465056
chr1	45591963	45592060	93279	0	+	0.453608	(0.44,0.476]	chr1	12572	3	INTRON	INTRON	NASP	ENSG00000132780.17	ENST00000437901.6:ENST00000537798.5:ENST00000437362.6:ENST00000350030.8:ENST00000464190.6:ENST00000527359.5:ENST00000528084.5:ENST00000453748.5:ENST00000525515.5:ENST00000527470.5:ENST00000529333.5:ENST00000531532.5:ENST00000530840.5:ENST00000528238.5:ENST00000534101.1:ENST00000470768.5:ENST00000372052.8:ENST00000351223.7:ENST00000629893.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	63	2	3.02366	4.432565	5.84147	0.00603307	1.03947e-4	0.0700813	0.00915599
chr10	68370283	68370383	4638773	0	-	0.36	(0.35,0.378]	chr10	426545	58	INTRON	INTRON	RUFY2	ENSG00000204130.14	ENST00000466493.5:ENST00000484083.5:ENST00000602465.6:ENST00000388768.6:ENST00000265865.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	30	2	4.29961	4.432555000000001	4.5655	0.0158483	0.0155464	0.109464	0.100909
chr12	122857838	122857927	5242111	0	+	0.370787	(0.35,0.378]	chr12	498041	8	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	HIP1R	ENSG00000130787.14	ENST00000535831.5:ENST00000253083.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	30	2	4.29961	4.432555000000001	4.5655	0.0158483	0.0155464	0.109464	0.100909
chr13	45373860	45373957	5480274	0	+	0.350515	(0.35,0.378]	chr13	525035	22	INTRON	INTRON	TPT1-AS1	ENSG00000170919.16	ENST00000517509.5:ENST00000658870.1:ENST00000653307.1:ENST00000661180.1:ENST00000655984.1:ENST00000654229.1:ENST00000519454.6:ENST00000665586.1:ENST00000520590.5:ENST00000521336.6:ENST00000655666.1:ENST00000669281.1:ENST00000657761.1:ENST00000668209.1:ENST00000659577.1:ENST00000523506.6:ENST00000661291.1:ENST00000655385.1:ENST00000652823.1:ENST00000524062.5:ENST00000655124.1:ENST00000662212.1:ENST00000664881.1:ENST00000669627.1:ENST00000521507.5:ENST00000523445.5:ENST00000520310.6:ENST00000667948.1:ENST00000668256.1:ENST00000654626.1:ENST00000660680.1:ENST00000665079.1:ENST00000662614.1:ENST00000522845.2	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	0	30	2	4.29961	4.432555000000001	4.5655	0.0158483	0.0155464	0.109464	0.100909
chr3	72395422	72395522	1745409	0	-	0.37	(0.35,0.378]	chr3	177368	149	INTRON	INTRON	RYBP	ENSG00000163602.12	ENST00000477973.5	protein_coding	protein_coding	protein_coding	protein_coding	0	30	2	4.29961	4.432555000000001	4.5655	0.0158483	0.0155464	0.109464	0.100909
chr9	37859459	37859547	4122271	0	+	0.375	(0.35,0.378]	chr9	375778	6	INTRON	INTRON	DCAF10	ENSG00000122741.16	ENST00000242323.8:ENST00000377724.8:ENST00000461549.1:ENST00000483167.5:ENST00000478453.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	30	2	4.29961	4.432555000000001	4.5655	0.0158483	0.0155464	0.109464	0.100909
chr11	46373201	46373301	4784378	0	+	0.31	(0.28,0.32]	chr11	442476	1	SS5_PROX	SS5_PROX:INTRON	DGKZ	ENSG00000149091.15	ENST00000343674.10:ENST00000532868.6:ENST00000528615.5:ENST00000531879.5:ENST00000524984.5:ENST00000456247.7:ENST00000527911.5:ENST00000318201.12:ENST00000421244.6:ENST00000454345.6:ENST00000528173.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	32	2	4.03345	4.43255	4.83165	0.0704058	0.00527257	0.184298	0.0656295
chr11	117249245	117249345	4869603	0	+	0.31	(0.28,0.32]	chr11	454512	19	INTRON	INTRON	RNF214	ENSG00000167257.11	ENST00000300650.9:ENST00000531452.5:ENST00000531287.5:ENST00000530849.1	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.03345	4.43255	4.83165	0.0704058	0.00527257	0.184298	0.0656295
chr12	31975814	31975914	5106768	0	+	0.3	(0.28,0.32]	chr12	482333	51	INTRON	INTRON	RESF1	ENSG00000174718.12	ENST00000541981.5:ENST00000540924.5:ENST00000312561.9:ENST00000535596.5:ENST00000397578.7:ENST00000381054.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	32	2	4.03345	4.43255	4.83165	0.0704058	0.00527257	0.184298	0.0656295
chr17	43076814	43076914	6775361	0	-	0.32	(0.28,0.32]	chr17	667752	2	SS3_PROX	SS3_PROX:INTRON	BRCA1	ENSG00000012048.23	ENST00000471181.7:ENST00000352993.7:ENST00000357654.9:ENST00000468300.5:ENST00000644379.1:ENST00000586385.5:ENST00000591534.5:ENST00000591849.5:ENST00000493795.5:ENST00000491747.6:ENST00000461221.5:ENST00000478531.5:ENST00000484087.5:ENST00000493919.5:ENST00000487825.5:ENST00000621897.1:ENST00000461574.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	32	2	4.03345	4.43255	4.83165	0.0704058	0.00527257	0.184298	0.0656295
chr6	90516304	90516402	3162069	0	-	0.346939	(0.32,0.35]	chr6	294892	29	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	MAP3K7	ENSG00000135341.18	ENST00000369332.7:ENST00000369327.7:ENST00000369325.7:ENST00000369329.8:ENST00000479630.1:ENST00000369320.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	152	2	4.30141	4.432535	4.56366	4.56835e-5	4.12717e-6	0.00584488	0.00135113
chr15	70089837	70089937	6215425	0	-	0.5	(0.476,0.515]	chr15	593115	133	INTRON	INTRON	TLE3	ENSG00000140332.18	ENST00000558939.5:ENST00000451782.7:ENST00000317509.12:ENST00000557919.5:ENST00000560525.6:ENST00000559929.5:ENST00000560589.5:ENST00000561453.5:ENST00000557997.5:ENST00000560939.5:ENST00000559048.5:ENST00000440567.7:ENST00000558201.5:ENST00000654081.1:ENST00000559191.5:ENST00000557907.5:ENST00000558379.5:ENST00000557984.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	32	2	3.83018	4.43242	5.03466	0.0423385	0.00252065	0.161744	0.0446195
chr17	80826822	80826922	6687618	0	+	0.49	(0.476,0.515]	chr17	653460	32	INTRON	INTRON	RPTOR	ENSG00000141564.15	ENST00000574767.5:ENST00000577161.5:ENST00000306801.8:ENST00000544334.6:ENST00000575542.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	32	2	3.83018	4.43242	5.03466	0.0423385	0.00252065	0.161744	0.0446195
chr11	57797077	57797163	4793493	0	+	0.488372	(0.476,0.515]	chr11	443754	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	ENSG00000288534:CTNND1	ENSG00000288534.1:ENSG00000198561.16	ENST00000673781.1:ENST00000673810.1:ENST00000674116.1:ENST00000674060.1:ENST00000524630.5:ENST00000529919.5:ENST00000533189.1:ENST00000682741.1:ENST00000358694.10:ENST00000361332.8:ENST00000361391.10:ENST00000361796.9:ENST00000415361.6:ENST00000426142.6:ENST00000428599.6:ENST00000525902.5:ENST00000526357.5:ENST00000526772.5:ENST00000527467.5:ENST00000528232.5:ENST00000528621.5:ENST00000529526.5:ENST00000529873.5:ENST00000529986.5:ENST00000530094.5:ENST00000530748.5:ENST00000531014.5:ENST00000532245.5:ENST00000532463.5:ENST00000532649.5:ENST00000532787.5:ENST00000532844.5:ENST00000533667.5:ENST00000534579.5:ENST00000399050.10:ENST00000526938.5:ENST00000531007.2:ENST00000674015.1:ENST00000673826.1:ENST00000673683.1:ENST00000674106.1:ENST00000682814.1:ENST00000681984.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	81	2	3.23946	4.43234	5.62522	2.59571e-4	2.4907e-4	0.0145812	0.014326
chr6	82176497	82176597	3143040	0	-	0.34	(0.32,0.35]	chr6	293011	11	INTRON	INTRON	IBTK	ENSG00000005700.15	ENST00000505222.5:ENST00000306270.12:ENST00000610980.4:ENST00000445419.6:ENST00000503400.5:ENST00000503631.5:ENST00000510291.5:ENST00000471036.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	99	2	3.09558	4.4320900000000005	5.7686	9.89544e-4	8.9843e-5	0.0287967	0.0079464
chr2	218579468	218579566	1018299	0	+	0.5	(0.476,0.515]	chr2	108431	49	INTRON	INTRON	CNOT9	ENSG00000144580.14	ENST00000627282.2:ENST00000542068.5:ENST00000433439.1:ENST00000273064.11:ENST00000432877.5:ENST00000295701.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	64	2	3.15202	4.432085	5.71215	0.00455841	5.54639e-5	0.0595107	0.00609037
chr1	35368933	35369032	69297	0	+	0.414141	(0.408,0.44]	chr1	8749	68	INTRON	INTRON	ZMYM4	ENSG00000146463.12	ENST00000314607.11:ENST00000457946.1:ENST00000482131.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	29	2	4.33238	4.43163	4.53088	0.0218901	0.00669275	0.11491	0.0738715
chr10	29432573	29432673	4415017	0	+	0.43	(0.408,0.44]	chr10	407249	103	INTRON	INTRON	SVIL-AS1	ENSG00000224597.11	ENST00000430295.5:ENST00000684815.1:ENST00000413405.6:ENST00000646086.2:ENST00000423223.6:ENST00000414457.6:ENST00000686070.1:ENST00000687838.1:ENST00000445521.6:ENST00000686207.1:ENST00000446807.5:ENST00000438202.5:ENST00000455774.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	29	2	4.33238	4.43163	4.53088	0.0218901	0.00669275	0.11491	0.0738715
chr12	74276523	74276622	5368215	0	-	0.434343	(0.408,0.44]	chr12	512132	67	INTRON	INTRON	LINC02882:ENSG00000257183	ENSG00000251138.7:ENSG00000257183.1	ENST00000663261.1:ENST00000665907.1:ENST00000669556.1:ENST00000653134.1:ENST00000549905.5:ENST00000662107.1:ENST00000658833.1:ENST00000515416.7:ENST00000551726.2:ENST00000670573.1:ENST00000656876.1:ENST00000668228.1:ENST00000668997.1:ENST00000665895.1:ENST00000670471.1:ENST00000658677.1:ENST00000668665.1:ENST00000552046.1	lncRNA	lncRNA	lncRNA	lncRNA	0	29	2	4.33238	4.43163	4.53088	0.0218901	0.00669275	0.11491	0.0738715
chr12	102316033	102316133	5206833	0	+	0.43	(0.408,0.44]	chr12	492881	1186	EXON_LNCRNA	EXON_LNCRNA:INTRON	HELLPAR:LINC02456	ENSG00000281344.1:ENSG00000283052.1	ENST00000626826.1:ENST00000635615.1	lncRNA	lncRNA	lncRNA	lncRNA	0	29	2	4.33238	4.43163	4.53088	0.0218901	0.00669275	0.11491	0.0738715
chr12	122400343	122400443	5441459	0	-	0.43	(0.408,0.44]	chr12	520452	1	SS3_PROX	SS3_PROX:INTRON	CLIP1	ENSG00000130779.22	ENST00000361654.8:ENST00000358808.6:ENST00000620786.5:ENST00000537178.5:ENST00000539080.1	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	4.33238	4.43163	4.53088	0.0218901	0.00669275	0.11491	0.0738715
chr14	65007574	65007673	5752754	0	+	0.414141	(0.408,0.44]	chr14	546422	29	INTRON	INTRON	CHURC1-FNTB:FNTB	ENSG00000125954.13:ENSG00000257365.8	ENST00000552941.6:ENST00000549987.1:ENST00000551823.1:ENST00000553743.5:ENST00000246166.3:ENST00000555372.5:ENST00000555742.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	29	2	4.33238	4.43163	4.53088	0.0218901	0.00669275	0.11491	0.0738715
chr15	85093569	85093669	6090059	0	+	0.44	(0.408,0.44]	chr15	579554	20	INTRON	INTRON	PDE8A	ENSG00000073417.15	ENST00000310298.8:ENST00000557957.5:ENST00000394553.6:ENST00000339708.9:ENST00000478717.5:ENST00000485596.5:ENST00000559742.5:ENST00000559086.5:ENST00000560789.5:ENST00000557819.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	29	2	4.33238	4.43163	4.53088	0.0218901	0.00669275	0.11491	0.0738715
chr16	68301423	68301523	6372254	0	+	0.43	(0.408,0.44]	chr16	612394	42	UTR3	UTR3:EXON_MRNA	SLC7A6	ENSG00000103064.15	ENST00000618043.4:ENST00000648130.1:ENST00000219343.11:ENST00000379152.7:ENST00000566454.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	29	2	4.33238	4.43163	4.53088	0.0218901	0.00669275	0.11491	0.0738715
chr2	53927891	53927983	1120133	0	-	0.413043	(0.408,0.44]	chr2	120040	4	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PSME4	ENSG00000068878.15	ENST00000404125.6:ENST00000389993.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	29	2	4.33238	4.43163	4.53088	0.0218901	0.00669275	0.11491	0.0738715
chr2	151423408	151423496	893345	0	+	0.409091	(0.408,0.44]	chr2	98907	3	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	RIF1	ENSG00000080345.18	ENST00000453091.6:ENST00000428287.6:ENST00000444746.7:ENST00000243326.9:ENST00000414861.6:ENST00000430328.6:ENST00000498041.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	29	2	4.33238	4.43163	4.53088	0.0218901	0.00669275	0.11491	0.0738715
chr9	133136101	133136200	4369342	0	-	0.414141	(0.408,0.44]	chr9	401975	51	INTRON	INTRON	RALGDS	ENSG00000160271.16	ENST00000393160.7	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	4.33238	4.43163	4.53088	0.0218901	0.00669275	0.11491	0.0738715
chr10	63323901	63324001	4633969	0	-	0.48	(0.476,0.515]	chr10	426226	548	INTRON	INTRON	JMJD1C	ENSG00000171988.20	ENST00000399262.7:ENST00000633035.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	65	2	3.5704	4.431605	5.29281	8.75056e-4	4.07635e-4	0.0270926	0.0181306
chr11	87097090	87097190	4843405	0	+	0.51	(0.476,0.515]	chr11	451856	53	INTRON	INTRON	TMEM135	ENSG00000166575.17	ENST00000340353.11:ENST00000529023.5:ENST00000526733.5:ENST00000305494.6:ENST00000532959.5:ENST00000525018.5:ENST00000531800.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	65	2	3.5704	4.431605	5.29281	8.75056e-4	4.07635e-4	0.0270926	0.0181306
chr1	21071352	21071452	392570	0	-	0.44	(0.408,0.44]	chr1	46823	60	INTRON	INTRON	EIF4G3	ENSG00000075151.24	ENST00000374935.7:ENST00000602326.6:ENST00000685872.1:ENST00000686579.1:ENST00000688741.1:ENST00000684485.1:ENST00000400422.6:ENST00000634879.2:ENST00000693470.1:ENST00000685814.1:ENST00000356916.7:ENST00000682284.1:ENST00000438975.5:ENST00000411888.5:ENST00000463775.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	29	2	4.42713	4.431465	4.4358	0.0173083	0.00893097	0.104099	0.0849778
chr1	174201233	174201333	257521	0	+	0.44	(0.408,0.44]	chr1	30720	412	INTRON	INTRON	RABGAP1L	ENSG00000152061.24	ENST00000357444.10:ENST00000251507.8:ENST00000681986.1:ENST00000635248.1:ENST00000457696.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	29	2	4.42713	4.431465	4.4358	0.0173083	0.00893097	0.104099	0.0849778
chr15	57275658	57275757	6035714	0	+	0.434343	(0.408,0.44]	chr15	574805	20	INTRON	INTRON	TCF12	ENSG00000140262.18	ENST00000438423.6:ENST00000267811.9:ENST00000333725.10:ENST00000560190.5:ENST00000559609.5:ENST00000557843.5:ENST00000543579.5:ENST00000537840.5:ENST00000343827.7:ENST00000559710.5:ENST00000559703.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	29	2	4.42713	4.431465	4.4358	0.0173083	0.00893097	0.104099	0.0849778
chr2	216191392	216191486	1015181	0	+	0.43617	(0.408,0.44]	chr2	108031	7	INTRON	INTRON	XRCC5	ENSG00000079246.16	ENST00000392133.7:ENST00000392132.7:ENST00000460284.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	29	2	4.42713	4.431465	4.4358	0.0173083	0.00893097	0.104099	0.0849778
chr20	21237594	21237693	7248044	0	+	0.424242	(0.408,0.44]	chr20	735874	44	INTRON	INTRON	KIZ	ENSG00000088970.16	ENST00000619574.4:ENST00000620891.4:ENST00000611685.4:ENST00000616848.4:ENST00000619189.5:ENST00000616679.4:ENST00000619179.4:ENST00000621366.1:ENST00000451772.5:ENST00000419359.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	29	2	4.42713	4.431465	4.4358	0.0173083	0.00893097	0.104099	0.0849778
chr5	133086581	133086681	2488355	0	+	0.44	(0.408,0.44]	chr5	237509	4	SS3_PROX	SS3_PROX:INTRON	HSPA4	ENSG00000170606.16	ENST00000304858.7:ENST00000504328.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	29	2	4.42713	4.431465	4.4358	0.0173083	0.00893097	0.104099	0.0849778
chr5	154424684	154424783	2755859	0	-	0.434343	(0.408,0.44]	chr5	259909	152	INTRON	INTRON	SAP30L-AS1	ENSG00000245275.8	ENST00000658072.1:ENST00000519727.5:ENST00000652933.1:ENST00000524264.6:ENST00000652895.1	lncRNA	lncRNA	lncRNA	lncRNA	0	29	2	4.42713	4.431465	4.4358	0.0173083	0.00893097	0.104099	0.0849778
chr6	2774416	2774515	2787588	0	+	0.434343	(0.408,0.44]	chr6	263170	37	INTRON	INTRON	WRNIP1	ENSG00000124535.16	ENST00000380773.9:ENST00000380771.8:ENST00000618555.4:ENST00000380769.8:ENST00000380764.1	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	4.42713	4.431465	4.4358	0.0173083	0.00893097	0.104099	0.0849778
chr1	111646454	111646554	185382	0	+	0.29	(0.28,0.32]	chr1	20514	185	INTRON	INTRON	RAP1A	ENSG00000116473.15	ENST00000356415.5:ENST00000687939.1:ENST00000369709.4:ENST00000494982.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	32	2	4.12807	4.431405	4.73474	0.0338135	0.0162835	0.146709	0.101453
chr14	30609642	30609739	5674911	0	+	0.28866000000000003	(0.28,0.32]	chr14	540587	12	INTRON	INTRON	G2E3	ENSG00000092140.16	ENST00000206595.11:ENST00000438909.6:ENST00000648008.1:ENST00000553504.5:ENST00000548934.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	32	2	4.12807	4.431405	4.73474	0.0338135	0.0162835	0.146709	0.101453
chr6	132462831	132462926	3221854	0	-	0.305263	(0.28,0.32]	chr6	299491	6	INTRON	INTRON	STX7	ENSG00000079950.14	ENST00000367941.7:ENST00000367937.4	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.12807	4.431405	4.73474	0.0338135	0.0162835	0.146709	0.101453
chr7	116957895	116957991	3386029	0	+	0.302083	(0.28,0.32]	chr7	317120	8	INTRON	INTRON	ST7:ST7-OT4	ENSG00000004866.22:ENSG00000214188.9	ENST00000393446.6:ENST00000265437.9:ENST00000393451.7:ENST00000438863.5:ENST00000393449.5:ENST00000443979.5:ENST00000323984.8:ENST00000417919.5:ENST00000446490.5:ENST00000397750.7:ENST00000466018.5:ENST00000471110.5:ENST00000470996.4:ENST00000397751.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:nonsense_mediated_decay:lncRNA	0	32	2	4.12807	4.431405	4.73474	0.0338135	0.0162835	0.146709	0.101453
chr2	197494250	197494331	1307114	0	-	0.296296	(0.28,0.32]	chr2	136796	1	EXON_MRNA	EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HSPD1	ENSG00000144381.18	ENST00000388968.8:ENST00000426480.2:ENST00000345042.6:ENST00000452200.6:ENST00000679291.1:ENST00000677403.1:ENST00000678621.1:ENST00000678545.1:ENST00000676933.1:ENST00000678170.1:ENST00000476746.6:ENST00000678969.1:ENST00000428204.6:ENST00000418022.2:ENST00000439605.2:ENST00000440114.2:ENST00000461097.2:ENST00000677792.1:ENST00000678761.1:ENST00000677913.1:ENST00000677454.1:ENST00000486181.5:ENST00000430176.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	69	2	3.26551	4.43133	5.59715	0.0030714	0.00123856	0.0509893	0.0322669
chr11	62126953	62127052	4797903	0	+	0.353535	(0.35,0.378]	chr11	444466	24	INTRON	INTRON	INCENP	ENSG00000149503.13	ENST00000278849.4:ENST00000533896.5:ENST00000394818.8:ENST00000528037.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	31	2	4.07186	4.431325	4.79079	0.0279478	0.00846427	0.137011	0.0776969
chr20	63210477	63210576	7362724	0	-	0.59596	(0.57,1]	chr20	751230	63	INTRON	INTRON	YTHDF1	ENSG00000149658.18	ENST00000370339.8:ENST00000370334.4	protein_coding	protein_coding	protein_coding	protein_coding	1	41	2	3.88806	4.4313199999999995	4.97458	2.67728e-4	6.56297e-5	0.0149989	0.0067007
chr1	31928841	31928941	414340	0	-	0.42	(0.408,0.44]	chr1	49920	43	INTRON	INTRON	PTP4A2	ENSG00000184007.22	ENST00000647444.2:ENST00000649841.1:ENST00000468531.1:ENST00000534796.5:ENST00000532289.1:ENST00000526960.1:ENST00000524384.5:ENST00000528840.1:ENST00000494444.2:ENST00000529477.5:ENST00000533408.1:ENST00000475464.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	30	2	4.00385	4.431285	4.85872	0.0454568	0.00221911	0.149888	0.0435144
chr12	123214834	123214934	5443876	0	-	0.44	(0.408,0.44]	chr12	520842	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	MPHOSPH9	ENSG00000051825.15	ENST00000606320.6:ENST00000541076.6:ENST00000545556.6:ENST00000302373.8:ENST00000539024.5:ENST00000539336.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	30	2	4.00385	4.431285	4.85872	0.0454568	0.00221911	0.149888	0.0435144
chr15	66522293	66522391	6050490	0	+	0.418367	(0.408,0.44]	chr15	576152	7	INTRON	INTRON	ZWILCH	ENSG00000174442.12	ENST00000535141.6:ENST00000613446.4:ENST00000446801.6:ENST00000565627.5:ENST00000307897.10:ENST00000561583.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	30	2	4.00385	4.431285	4.85872	0.0454568	0.00221911	0.149888	0.0435144
chr17	5506675	5506774	6715054	0	-	0.434343	(0.408,0.44]	chr17	658393	3	INTRON	INTRON	NLRP1	ENSG00000091592.16	ENST00000544378.6:ENST00000262467.10:ENST00000613500.4:ENST00000574512.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	30	2	4.00385	4.431285	4.85872	0.0454568	0.00221911	0.149888	0.0435144
chr19	15307142	15307242	7147152	0	-	0.44	(0.408,0.44]	chr19	721965	268	INTRON	INTRON	BRD4	ENSG00000141867.19	ENST00000679869.1:ENST00000360016.9:ENST00000594841.5:ENST00000597315.5:ENST00000601941.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	30	2	4.00385	4.431285	4.85872	0.0454568	0.00221911	0.149888	0.0435144
chr2	61444592	61444692	1130292	0	-	0.42	(0.408,0.44]	chr2	121499	234	INTRON	INTRON	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000453133.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	30	2	4.00385	4.431285	4.85872	0.0454568	0.00221911	0.149888	0.0435144
chr20	62026006	62026106	7360519	0	-	0.42	(0.408,0.44]	chr20	750714	109	INTRON	INTRON	TAF4	ENSG00000130699.20	ENST00000252996.9:ENST00000608887.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	30	2	4.00385	4.431285	4.85872	0.0454568	0.00221911	0.149888	0.0435144
chr4	73240294	73240394	2160642	0	-	0.44	(0.408,0.44]	chr4	212799	173	INTRON	INTRON	ANKRD17	ENSG00000132466.20	ENST00000358602.9:ENST00000558247.5:ENST00000330838.10:ENST00000561029.1	protein_coding	protein_coding	protein_coding	protein_coding	0	30	2	4.00385	4.431285	4.85872	0.0454568	0.00221911	0.149888	0.0435144
chr10	11584036	11584136	4555792	0	-	0.46	(0.44,0.476]	chr10	420461	103	INTRON	INTRON	USP6NL	ENSG00000148429.15	ENST00000609104.6:ENST00000606752.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	96	2	2.79598	4.4305900000000005	6.0652	5.82325e-4	3.50238e-5	0.0219289	0.00499276
chr9	112313878	112313978	4317763	0	-	0.37	(0.35,0.378]	chr9	397079	156	INTRON	INTRON	PTBP3	ENSG00000119314.16	ENST00000334318.10:ENST00000458258.5:ENST00000374257.6:ENST00000374255.6:ENST00000343327.6:ENST00000487997.1:ENST00000210227.4:ENST00000450374.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	190	2	4.21448	4.430429999999999	4.64638	5.44574e-6	7.79945e-7	0.00173803	4.96758e-4
chr7	50741314	50741413	3532155	0	-	0.373737	(0.35,0.378]	chr7	329508	86	INTRON	INTRON	GRB10	ENSG00000106070.20	ENST00000335866.7:ENST00000401949.6:ENST00000644769.1:ENST00000644879.1:ENST00000406641.5:ENST00000402497.6:ENST00000643299.1:ENST00000407526.6:ENST00000645075.2:ENST00000439044.7:ENST00000644716.1:ENST00000465602.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	63	2	3.45621	4.43033	5.40445	0.0011842	0.00114224	0.031662	0.0307966
chr11	2963176	2963275	4891696	0	-	0.40404	(0.378,0.408]	chr11	458309	29	INTRON	INTRON	NAP1L4	ENSG00000205531.13	ENST00000620138.4:ENST00000380542.9:ENST00000526115.5:ENST00000492685.5:ENST00000528363.5:ENST00000532325.6:ENST00000448187.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	62	2	3.22599	4.4303099999999995	5.63463	0.00288652	3.59226e-4	0.0494641	0.0175484
chr17	59929128	59929226	6644134	0	+	0.510204	(0.476,0.515]	chr17	648834	22	INTRON	INTRON	RPS6KB1	ENSG00000108443.14	ENST00000393021.7:ENST00000472940.5:ENST00000225577.9:ENST00000443572.6:ENST00000489824.1:ENST00000406116.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	29	2	4.24501	4.4300999999999995	4.61519	0.0247713	0.00528365	0.12011	0.0656295
chr5	14698174	14698272	2321229	0	+	0.510204	(0.476,0.515]	chr5	224848	53	UTR3	UTR3:EXON_MRNA	OTULIN	ENSG00000154124.5	ENST00000284274.5	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	4.24501	4.4300999999999995	4.61519	0.0247713	0.00528365	0.12011	0.0656295
chr6	20618818	20618918	2829229	0	+	0.48	(0.476,0.515]	chr6	265649	593	INTRON	INTRON	CDKAL1	ENSG00000145996.11	ENST00000274695.8:ENST00000378610.1	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	4.24501	4.4300999999999995	4.61519	0.0247713	0.00528365	0.12011	0.0656295
chr8	73866068	73866168	3972132	0	-	0.51	(0.476,0.515]	chr8	364247	352	INTRON	INTRON	ENSG00000258677:UBE2W	ENSG00000258677.2:ENSG00000104343.21	ENST00000358757.5:ENST00000602593.6:ENST00000517608.5:ENST00000650817.1:ENST00000422906.6:ENST00000419880.7:ENST00000651945.1:ENST00000519277.5:ENST00000519255.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	29	2	4.24501	4.4300999999999995	4.61519	0.0247713	0.00528365	0.12011	0.0656295
chr9	94261138	94261238	4161438	0	+	0.51	(0.476,0.515]	chr9	379439	14	INTRON	INTRON	ZNF169	ENSG00000175787.17	ENST00000395395.7:ENST00000492115.2:ENST00000340911.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	29	2	4.24501	4.4300999999999995	4.61519	0.0247713	0.00528365	0.12011	0.0656295
chrX	154039391	154039491	7912507	0	-	0.5	(0.476,0.515]	chrX	805604	2	SS5_PROX	SS5_PROX:INTRON	MECP2	ENSG00000169057.24	ENST00000303391.11:ENST00000453960.7:ENST00000628176.2:ENST00000407218.5:ENST00000486506.5:ENST00000369957.5:ENST00000631210.1:ENST00000496908.5:ENST00000481807.3:ENST00000415944.3:ENST00000460227.4:ENST00000463644.5:ENST00000488293.4:ENST00000630151.2:ENST00000676382.1:ENST00000611468.2:ENST00000637533.1:ENST00000675526.1:ENST00000637791.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	29	2	4.24501	4.4300999999999995	4.61519	0.0247713	0.00528365	0.12011	0.0656295
chr1	8413233	8413333	369713	0	-	0.29	(0.28,0.32]	chr1	43438	469	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000377464.5:ENST00000400907.6:ENST00000476556.5:ENST00000656437.1:ENST00000488215.5:ENST00000460659.5:ENST00000492766.5:ENST00000465125.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	31	2	4.33765	4.42999	4.52233	0.039714	0.0129279	0.143072	0.0990564
chr11	108329338	108329431	4858208	0	+	0.301075	(0.28,0.32]	chr11	453334	1	SS5_PROX	SS5_PROX:INTRON	ATM	ENSG00000149311.20	ENST00000675843.1:ENST00000683174.1:ENST00000527805.6:ENST00000675595.1:ENST00000452508.6:ENST00000278616.9:ENST00000524792.5:ENST00000683524.1:ENST00000684152.1:ENST00000533690.5:ENST00000682286.1:ENST00000525056.2:ENST00000682302.1:ENST00000684447.1:ENST00000525537.3:ENST00000638786.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	31	2	4.33765	4.42999	4.52233	0.039714	0.0129279	0.143072	0.0990564
chr16	591530	591630	6272721	0	+	0.29	(0.28,0.32]	chr16	598723	7	INTRON	INTRON	RAB40C	ENSG00000197562.10	ENST00000535977.5:ENST00000569575.5:ENST00000539661.5:ENST00000566290.5:ENST00000248139.8:ENST00000568586.5:ENST00000538492.5:ENST00000565511.5:ENST00000509637.6:ENST00000563109.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	31	2	4.33765	4.42999	4.52233	0.039714	0.0129279	0.143072	0.0990564
chr17	22112291	22112391	6578786	0	+	0.31	(0.28,0.32]	chr17	639556	210	INTRON	INTRON	UBBP4	ENSG00000263563.7	ENST00000648259.1:ENST00000688301.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	31	2	4.33765	4.42999	4.52233	0.039714	0.0129279	0.143072	0.0990564
chr17	40412258	40412318	6768319	0	-	0.316667	(0.28,0.32]	chr17	665982	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TOP2A	ENSG00000131747.15	ENST00000423485.6	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.33765	4.42999	4.52233	0.039714	0.0129279	0.143072	0.0990564
chr21	46285611	46285698	7471431	0	-	0.310345	(0.28,0.32]	chr21	761709	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MCM3AP	ENSG00000160294.11	ENST00000397708.1:ENST00000426537.1:ENST00000495475.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	31	2	4.33765	4.42999	4.52233	0.039714	0.0129279	0.143072	0.0990564
chr3	73054543	73054643	1452535	0	+	0.29	(0.28,0.32]	chr3	152969	68	INTRON	INTRON	PPP4R2	ENSG00000163605.15	ENST00000482242.5:ENST00000356692.10:ENST00000470976.1:ENST00000488810.5:ENST00000476505.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	31	2	4.33765	4.42999	4.52233	0.039714	0.0129279	0.143072	0.0990564
chr7	107425330	107425429	3611638	0	-	0.30303	(0.28,0.32]	chr7	336694	123	INTRON	INTRON	COG5	ENSG00000164597.15	ENST00000297135.9:ENST00000347053.8:ENST00000393603.7:ENST00000484237.5:ENST00000475638.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	31	2	4.33765	4.42999	4.52233	0.039714	0.0129279	0.143072	0.0990564
chr7	129897536	129897636	3637416	0	-	0.3	(0.28,0.32]	chr7	338216	162	INTRON	INTRON	UBE2H	ENSG00000186591.13	ENST00000355621.8:ENST00000649897.1:ENST00000473814.6:ENST00000496698.5:ENST00000472396.5:ENST00000480245.5:ENST00000490974.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	31	2	4.33765	4.42999	4.52233	0.039714	0.0129279	0.143072	0.0990564
chr8	15760335	15760434	3706355	0	+	0.282828	(0.28,0.32]	chr8	343623	21	INTRON	INTRON	TUSC3	ENSG00000104723.21	ENST00000382020.8:ENST00000515859.5:ENST00000506802.5:ENST00000503731.6:ENST00000510836.5:ENST00000508446.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	31	2	4.33765	4.42999	4.52233	0.039714	0.0129279	0.143072	0.0990564
chr8	104514658	104514757	4013977	0	-	0.30303	(0.28,0.32]	chr8	367433	52	INTRON	INTRON	LRP12	ENSG00000147650.12	ENST00000424843.6:ENST00000276654.10:ENST00000520770.1:ENST00000519675.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	31	2	4.33765	4.42999	4.52233	0.039714	0.0129279	0.143072	0.0990564
chrX	16604645	16604745	7768446	0	-	0.29	(0.28,0.32]	chrX	793950	134	INTRON	INTRON	CTPS2	ENSG00000047230.15	ENST00000359276.9:ENST00000443824.5:ENST00000380241.7	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.33765	4.42999	4.52233	0.039714	0.0129279	0.143072	0.0990564
chrX	77926621	77926718	7685194	0	+	0.319588	(0.28,0.32]	chrX	786839	21	INTRON	INTRON	ENSG00000248503:ATP7A:PGK1	ENSG00000248503.3:ENSG00000165240.22:ENSG00000102144.15	ENST00000686088.1:ENST00000693051.1:ENST00000341514.11:ENST00000688746.1:ENST00000688338.1:ENST00000685264.1:ENST00000686515.1:ENST00000687086.1:ENST00000689530.1:ENST00000686999.1:ENST00000644362.1:ENST00000343533.10:ENST00000686543.1:ENST00000686033.1:ENST00000692908.1:ENST00000686688.1:ENST00000686480.1:ENST00000689649.1:ENST00000686416.1:ENST00000682742.2:ENST00000685434.1:ENST00000693387.1:ENST00000688249.1:ENST00000689891.1:ENST00000691152.1:ENST00000688889.1:ENST00000687984.1:ENST00000685208.1:ENST00000687599.1:ENST00000685885.1:ENST00000687082.1:ENST00000693167.1:ENST00000692729.1:ENST00000645454.1:ENST00000686896.1:ENST00000689731.1:ENST00000684798.1:ENST00000686560.1:ENST00000686464.1:ENST00000686050.1:ENST00000602791.2:ENST00000686133.1:ENST00000645094.1:ENST00000689541.1:ENST00000642651.1:ENST00000693398.1:ENST00000688165.1:ENST00000692110.1:ENST00000687325.1:ENST00000689767.1:ENST00000687628.1:ENST00000691456.1	protein_coding	protein_coding	protein_coding:transcribed_processed_pseudogene	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	31	2	4.33765	4.42999	4.52233	0.039714	0.0129279	0.143072	0.0990564
chr3	47473029	47473128	1682830	0	-	0.434343	(0.408,0.44]	chr3	171885	3	INTRON	INTRON	SCAP	ENSG00000114650.21	ENST00000265565.10:ENST00000441517.6:ENST00000320017.10:ENST00000416208.5:ENST00000416847.5:ENST00000448217.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	30	2	4.10594	4.42996	4.75398	0.0219367	0.00703931	0.123836	0.0718189
chr6	35879033	35879132	3088396	0	-	0.414141	(0.408,0.44]	chr6	288860	43	INTRON	INTRON	SRPK1	ENSG00000096063.16	ENST00000373825.7:ENST00000423325.6:ENST00000346162.10:ENST00000361690.7:ENST00000510290.5:ENST00000373821.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	30	2	4.10594	4.42996	4.75398	0.0219367	0.00703931	0.123836	0.0718189
chr9	121086609	121086708	4190876	0	+	0.414141	(0.408,0.44]	chr9	382211	58	INTRON	INTRON	CNTRL	ENSG00000119397.19	ENST00000690496.1:ENST00000373865.8:ENST00000687079.1:ENST00000691066.1:ENST00000373855.7:ENST00000689134.1:ENST00000687169.1:ENST00000373847.6:ENST00000688832.1:ENST00000688313.1:ENST00000685174.1:ENST00000689889.1:ENST00000693191.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	30	2	4.10594	4.42996	4.75398	0.0219367	0.00703931	0.123836	0.0718189
chr9	135843848	135843948	4371622	0	-	0.41	(0.408,0.44]	chr9	402449	159	INTRON	INTRON	CAMSAP1	ENSG00000130559.19	ENST00000389532.9:ENST00000312405.10:ENST00000409386.3	protein_coding	protein_coding	protein_coding	protein_coding	0	30	2	4.10594	4.42996	4.75398	0.0219367	0.00703931	0.123836	0.0718189
chr19	902627	902727	7110832	0	-	0.45	(0.44,0.476]	chr19	714172	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	R3HDM4	ENSG00000198858.10	ENST00000589428.5:ENST00000361574.10:ENST00000587975.2:ENST00000590454.2:ENST00000589445.1:ENST00000626716.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	65	2	3.50954	4.42993	5.35032	0.00116647	3.02713e-4	0.0312127	0.0155054
chr1	219183313	219183413	318472	0	+	0.29	(0.28,0.32]	chr1	36451	35	INTRON	INTRON	LYPLAL1	ENSG00000143353.12	ENST00000460522.5:ENST00000366927.3:ENST00000496776.5:ENST00000366928.10:ENST00000477938.5:ENST00000463964.5:ENST00000483635.5:ENST00000474379.5:ENST00000469590.5:ENST00000478794.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	31	2	4.4263	4.42985	4.4334	0.0330296	0.0163355	0.133816	0.109464
chr10	50326204	50326304	4617699	0	-	0.32	(0.28,0.32]	chr10	425393	144	INTRON	INTRON	SGMS1	ENSG00000198964.14	ENST00000429490.5:ENST00000361781.7:ENST00000602619.1	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.4263	4.42985	4.4334	0.0330296	0.0163355	0.133816	0.109464
chr13	41031791	41031891	5577656	0	-	0.31	(0.28,0.32]	chr13	533206	126	INTRON	INTRON	ELF1	ENSG00000120690.16	ENST00000405737.2	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.4263	4.42985	4.4334	0.0330296	0.0163355	0.133816	0.109464
chr14	26889459	26889558	5663243	0	+	0.30303	(0.28,0.32]	chr14	540167	81	INTRON	INTRON	ENSG00000258081:MIR4307HG	ENSG00000258081.4:ENSG00000257612.2	ENST00000656336.1:ENST00000550024.1:ENST00000552303.1:ENST00000664825.1:ENST00000657233.1:ENST00000661570.1:ENST00000548170.2:ENST00000654842.1:ENST00000657558.1:ENST00000656237.1:ENST00000667739.1:ENST00000654874.1:ENST00000658815.1:ENST00000667676.1:ENST00000658149.1:ENST00000666037.1:ENST00000666377.1:ENST00000655440.1:ENST00000666571.1:ENST00000653927.1:ENST00000669484.1:ENST00000663099.1:ENST00000653481.1:ENST00000667699.1:ENST00000668735.1:ENST00000656692.1:ENST00000662028.1	lncRNA	lncRNA	lncRNA	lncRNA	0	31	2	4.4263	4.42985	4.4334	0.0330296	0.0163355	0.133816	0.109464
chr14	65024688	65024787	5752932	0	+	0.30303	(0.28,0.32]	chr14	546444	27	INTRON	INTRON	CHURC1-FNTB:FNTB	ENSG00000125954.13:ENSG00000257365.8	ENST00000552941.6:ENST00000549987.1:ENST00000246166.3:ENST00000555742.5:ENST00000554210.5:ENST00000554334.5:ENST00000556709.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	31	2	4.4263	4.42985	4.4334	0.0330296	0.0163355	0.133816	0.109464
chr17	7611286	7611385	6719206	0	-	0.282828	(0.28,0.32]	chr17	659095	48	INTRON	INTRON	FXR2	ENSG00000129245.12	ENST00000250113.12:ENST00000571597.1	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.4263	4.42985	4.4334	0.0330296	0.0163355	0.133816	0.109464
chr17	28071357	28071457	6582808	0	+	0.29	(0.28,0.32]	chr17	639837	94	INTRON	INTRON	NLK	ENSG00000087095.13	ENST00000407008.8:ENST00000496808.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	31	2	4.4263	4.42985	4.4334	0.0330296	0.0163355	0.133816	0.109464
chr2	208707476	208707576	996472	0	+	0.31	(0.28,0.32]	chr2	106920	501	INTRON	INTRON	PTH2R	ENSG00000144407.10	ENST00000419079.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	0	31	2	4.4263	4.42985	4.4334	0.0330296	0.0163355	0.133816	0.109464
chr3	17469495	17469595	1627683	0	-	0.29	(0.28,0.32]	chr3	168186	406	INTRON	INTRON	TBC1D5	ENSG00000131374.15	ENST00000253692.11:ENST00000696125.1:ENST00000414318.2:ENST00000429383.8:ENST00000446818.6:ENST00000415814.6:ENST00000452492.6:ENST00000412981.5:ENST00000428355.5:ENST00000425944.5:ENST00000430169.5:ENST00000445294.5:ENST00000414349.5:ENST00000443499.6:ENST00000444756.5:ENST00000497531.5:ENST00000443386.5:ENST00000507877.5:ENST00000446863.5:ENST00000434420.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	31	2	4.4263	4.42985	4.4334	0.0330296	0.0163355	0.133816	0.109464
chr3	60293325	60293425	1712547	0	-	0.31	(0.28,0.32]	chr3	176138	2126	INTRON	INTRON	FHIT	ENSG00000189283.10	ENST00000492590.6:ENST00000476844.5:ENST00000468189.5:ENST00000488467.5	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.4263	4.42985	4.4334	0.0330296	0.0163355	0.133816	0.109464
chr3	60408817	60408917	1713702	0	-	0.31	(0.28,0.32]	chr3	176138	3281	INTRON	INTRON	FHIT	ENSG00000189283.10	ENST00000492590.6:ENST00000476844.5:ENST00000468189.5:ENST00000488467.5	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.4263	4.42985	4.4334	0.0330296	0.0163355	0.133816	0.109464
chr5	10389240	10389338	2318007	0	+	0.316327	(0.28,0.32]	chr5	224637	18	INTRON	INTRON	MARCHF6	ENSG00000145495.16	ENST00000274140.10:ENST00000449913.6:ENST00000502795.5:ENST00000511802.5:ENST00000503788.5:ENST00000640713.1:ENST00000510872.5:ENST00000507863.1:ENST00000506131.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	31	2	4.4263	4.42985	4.4334	0.0330296	0.0163355	0.133816	0.109464
chr5	60956527	60956627	2359333	0	+	0.32	(0.28,0.32]	chr5	227644	107	INTRON	INTRON	NDUFAF2	ENSG00000164182.12	ENST00000678452.1:ENST00000677756.1:ENST00000296597.10:ENST00000511107.1:ENST00000677932.1:ENST00000502658.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	31	2	4.4263	4.42985	4.4334	0.0330296	0.0163355	0.133816	0.109464
chr11	65413131	65413229	4805766	0	+	0.489796	(0.476,0.515]	chr11	446553	19	UTR3	UTR3:EXON_MRNA	FRMD8	ENSG00000126391.14	ENST00000317568.10:ENST00000355991.9	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	4.32915	4.429690000000001	4.53023	0.0124637	0.0119748	0.0973643	0.0899583
chr12	16621	16721	5253800	0	-	0.48	(0.476,0.515]	chr12	499849	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	WASH8P	ENSG00000226210.3	ENST00000400706.3	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	0	29	2	4.32915	4.429690000000001	4.53023	0.0124637	0.0119748	0.0973643	0.0899583
chr14	100296361	100296453	5968347	0	-	0.51087	(0.476,0.515]	chr14	567023	5	UTR5	UTR5:EXON_MRNA:SS3_PROX:INTRON	SLC25A29	ENSG00000197119.13	ENST00000359232.8:ENST00000554912.1:ENST00000392908.7:ENST00000554224.5:ENST00000556715.6:ENST00000554060.1:ENST00000556868.1:ENST00000553359.5:ENST00000556873.5:ENST00000553574.1:ENST00000555051.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	29	2	4.32915	4.429690000000001	4.53023	0.0124637	0.0119748	0.0973643	0.0899583
chr3	63904396	63904494	1441408	0	+	0.5	(0.476,0.515]	chr3	152380	8	EXON_LNCRNA	EXON_LNCRNA:INTRON	ATXN7	ENSG00000163635.20	ENST00000647117.1:ENST00000674280.1:ENST00000474112.5:ENST00000474513.6:ENST00000295900.10:ENST00000674254.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	29	2	4.32915	4.429690000000001	4.53023	0.0124637	0.0119748	0.0973643	0.0899583
chr3	94064008	94064107	1458882	0	+	0.515152	(0.476,0.515]	chr3	153343	3	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NSUN3	ENSG00000178694.10	ENST00000483378.1:ENST00000477077.1:ENST00000476588.5:ENST00000485793.5:ENST00000461625.1:ENST00000314622.9:ENST00000468555.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	29	2	4.32915	4.429690000000001	4.53023	0.0124637	0.0119748	0.0973643	0.0899583
chr6	15575529	15575629	3064385	0	-	0.49	(0.476,0.515]	chr6	284701	273	INTRON	INTRON	DTNBP1	ENSG00000047579.20	ENST00000344537.10:ENST00000462989.6:ENST00000622898.4:ENST00000355917.7:ENST00000510395.5:ENST00000515875.5:ENST00000513680.5:ENST00000338950.9:ENST00000506844.1:ENST00000511762.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	29	2	4.32915	4.429690000000001	4.53023	0.0124637	0.0119748	0.0973643	0.0899583
chr6	35417253	35417352	2852728	0	+	0.484848	(0.476,0.515]	chr6	269505	57	INTRON	INTRON	PPARD	ENSG00000112033.14	ENST00000418635.6:ENST00000448077.6:ENST00000360694.8:ENST00000311565.4:ENST00000337400.6	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	4.32915	4.429690000000001	4.53023	0.0124637	0.0119748	0.0973643	0.0899583
chr8	28909861	28909961	3725050	0	+	0.51	(0.476,0.515]	chr8	346251	177	INTRON	INTRON	HMBOX1	ENSG00000147421.18	ENST00000287701.15:ENST00000558662.5:ENST00000519662.5:ENST00000397358.7:ENST00000560599.5:ENST00000523613.5:ENST00000560357.5:ENST00000521516.5:ENST00000519047.5:ENST00000560269.1:ENST00000355231.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	29	2	4.32915	4.429690000000001	4.53023	0.0124637	0.0119748	0.0973643	0.0899583
chr9	134341430	134341530	4220010	0	+	0.48	(0.476,0.515]	chr9	387343	144	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	29	2	4.32915	4.429690000000001	4.53023	0.0124637	0.0119748	0.0973643	0.0899583
chr17	39428580	39428677	6766923	0	-	0.463918	(0.44,0.476]	chr17	665553	4	INTRON	INTRON	MED1	ENSG00000125686.12	ENST00000394287.7:ENST00000300651.11:ENST00000577831.5:ENST00000584308.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	60	2	3.50584	4.429055	5.35227	8.66138e-4	8.47974e-4	0.0267232	0.0266729
chr10	97252723	97252823	4674755	0	-	0.33	(0.32,0.35]	chr10	430777	60	INTRON	INTRON	ARHGAP19	ENSG00000213390.11	ENST00000492211.5:ENST00000358308.7:ENST00000358531.9:ENST00000487035.1:ENST00000371027.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	31	2	4.06299	4.428905	4.79482	0.0559439	0.00447781	0.165463	0.0610799
chr10	133408243	133408342	4540361	0	+	0.343434	(0.32,0.35]	chr10	419095	51	INTRON	INTRON	MTG1	ENSG00000148824.19	ENST00000477902.6:ENST00000317502.11:ENST00000432508.3:ENST00000460848.5:ENST00000473735.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	31	2	4.06299	4.428905	4.79482	0.0559439	0.00447781	0.165463	0.0610799
chr15	85057998	85058098	6089692	0	+	0.35	(0.32,0.35]	chr15	579504	753	INTRON	INTRON	PDE8A	ENSG00000073417.15	ENST00000310298.8:ENST00000557957.5:ENST00000394553.6:ENST00000339708.9:ENST00000478717.5:ENST00000485596.5:ENST00000559742.5:ENST00000559086.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	31	2	4.06299	4.428905	4.79482	0.0559439	0.00447781	0.165463	0.0610799
chr2	121496795	121496895	1220852	0	-	0.34	(0.32,0.35]	chr2	129999	66	INTRON	INTRON	CLASP1	ENSG00000074054.20	ENST00000263710.8:ENST00000397587.7:ENST00000541377.5:ENST00000409078.8:ENST00000455322.6:ENST00000452274.6:ENST00000418989.5:ENST00000449975.1:ENST00000474065.5:ENST00000480007.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	31	2	4.06299	4.428905	4.79482	0.0559439	0.00447781	0.165463	0.0610799
chr17	43272201	43272301	6776910	0	-	0.45	(0.44,0.476]	chr17	667944	384	INTRON	INTRON	CCDC200	ENSG00000236383.9	ENST00000594691.6:ENST00000615433.2	protein_coding	protein_coding	protein_coding	protein_coding	2	84	2	2.59888	4.428865	6.25885	0.00487719	1.28061e-5	0.0640618	0.00283726
chr15	57083698	57083798	6033766	0	+	0.47	(0.44,0.476]	chr15	574682	106	INTRON	INTRON	TCF12	ENSG00000140262.18	ENST00000438423.6:ENST00000267811.9:ENST00000333725.10:ENST00000560190.5:ENST00000559609.5:ENST00000558908.5:ENST00000557843.5:ENST00000557947.5:ENST00000561152.1:ENST00000569880.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	29	2	4.23755	4.428545	4.61954	0.0263357	0.00506805	0.122221	0.0646039
chr3	119455123	119455223	1791899	0	-	0.45	(0.44,0.476]	chr3	179947	22	INTRON	INTRON	TMEM39A	ENSG00000176142.13	ENST00000319172.10:ENST00000438581.6:ENST00000491685.5:ENST00000486159.5:ENST00000486235.5:ENST00000468676.5:ENST00000490099.5:ENST00000497993.5:ENST00000482162.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	29	2	4.23755	4.428545	4.61954	0.0263357	0.00506805	0.122221	0.0646039
chr4	150962340	150962440	2271242	0	-	0.47	(0.44,0.476]	chr4	220921	329	INTRON	INTRON	LRBA	ENSG00000198589.14	ENST00000357115.9:ENST00000651943.2:ENST00000510413.5:ENST00000651035.1:ENST00000507224.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	29	2	4.23755	4.428545	4.61954	0.0263357	0.00506805	0.122221	0.0646039
chr5	69169806	69169902	2380005	0	+	0.46875	(0.44,0.476]	chr5	229157	11	INTRON	INTRON	CCNB1	ENSG00000134057.15	ENST00000506572.5:ENST00000256442.10:ENST00000508407.5:ENST00000505500.5:ENST00000503507.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	29	2	4.23755	4.428545	4.61954	0.0263357	0.00506805	0.122221	0.0646039
chr6	113954017	113954117	3195557	0	-	0.46	(0.44,0.476]	chr6	297715	2	INTRON	INTRON	HDAC2	ENSG00000196591.12	ENST00000519065.6:ENST00000368632.6:ENST00000519108.5:ENST00000523334.1:ENST00000518756.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	29	2	4.23755	4.428545	4.61954	0.0263357	0.00506805	0.122221	0.0646039
chr8	96233525	96233625	3994937	0	-	0.45	(0.44,0.476]	chr8	365831	4	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	UQCRB	ENSG00000156467.10	ENST00000287022.10:ENST00000517603.5:ENST00000521036.5:ENST00000518876.1:ENST00000518406.5:ENST00000521948.1:ENST00000523920.1:ENST00000519322.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	29	2	4.23755	4.428545	4.61954	0.0263357	0.00506805	0.122221	0.0646039
chr9	33987431	33987526	4245224	0	-	0.452632	(0.44,0.476]	chr9	390457	2	INTRON	INTRON	UBAP2	ENSG00000137073.24	ENST00000379238.7:ENST00000683659.1:ENST00000682239.1:ENST00000683140.1:ENST00000682209.1:ENST00000681980.1:ENST00000360802.6:ENST00000683252.1:ENST00000684158.1:ENST00000682914.1:ENST00000683717.1:ENST00000379239.9:ENST00000683084.1:ENST00000684754.1:ENST00000629575.2:ENST00000684298.1:ENST00000412543.6:ENST00000421278.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	29	2	4.23755	4.428545	4.61954	0.0263357	0.00506805	0.122221	0.0646039
chrX	120220349	120220448	7875792	0	-	0.474747	(0.44,0.476]	chrX	802060	398	INTRON	INTRON	NKAPP1	ENSG00000233382.8	ENST00000555168.1:ENST00000554109.1:ENST00000692735.1:ENST00000688620.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	0	29	2	4.23755	4.428545	4.61954	0.0263357	0.00506805	0.122221	0.0646039
chr7	10626848	10626948	3483048	0	-	0.39	(0.378,0.408]	chr7	325772	649	INTRON	INTRON	MGC4859	ENSG00000283117.1	ENST00000634803.1	lncRNA	lncRNA	lncRNA	lncRNA	4	217	2	3.90525	4.428495	4.95174	6.87539e-7	6.14674e-7	4.95106e-4	4.25689e-4
chr1	51769174	51769274	100939	0	+	0.34	(0.32,0.35]	chr1	13352	28	INTRON	INTRON	OSBPL9	ENSG00000117859.19	ENST00000371714.5:ENST00000428468.6:ENST00000447887.5:ENST00000495776.5:ENST00000435274.6:ENST00000453295.5:ENST00000489990.5:ENST00000531828.5:ENST00000361556.9:ENST00000462759.5:ENST00000486942.5:ENST00000528603.5:ENST00000475697.5:ENST00000531061.1:ENST00000531819.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	88	2	2.85974	4.42825	5.99676	0.00186579	1.55894e-4	0.0399675	0.0113565
chr11	68923124	68923223	4819219	0	+	0.262626	[0,0.28]	chr11	449187	49	INTRON	INTRON	IGHMBP2	ENSG00000132740.10	ENST00000675615.1:ENST00000676228.1:ENST00000255078.8:ENST00000676173.1:ENST00000674955.1:ENST00000675118.1:ENST00000675305.1:ENST00000675648.1:ENST00000674775.1:ENST00000675684.1:ENST00000675493.1:ENST00000674745.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	32	2	4.38387	4.428205	4.47254	0.0501911	0.020991	0.156383	0.122348
chr12	116088871	116088971	5423655	0	-	0.25	[0,0.28]	chr12	518245	659	INTRON	INTRON	MED13L	ENSG00000123066.9	ENST00000281928.9:ENST00000650226.1:ENST00000648737.1:ENST00000548743.2:ENST00000647567.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	32	2	4.38387	4.428205	4.47254	0.0501911	0.020991	0.156383	0.122348
chr15	94911247	94911347	6105746	0	+	0.23	[0,0.28]	chr15	581682	63	INTRON	INTRON	ENSG00000277654	ENSG00000277654.6	ENST00000618611.4:ENST00000648065.1:ENST00000618377.1:ENST00000621842.4:ENST00000615751.4:ENST00000614581.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	0	32	2	4.38387	4.428205	4.47254	0.0501911	0.020991	0.156383	0.122348
chr2	32477783	32477883	732028	0	+	0.27	[0,0.28]	chr2	84462	2	SS5_PROX	SS5_PROX:INTRON	BIRC6	ENSG00000115760.15	ENST00000421745.7:ENST00000648282.1	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.38387	4.428205	4.47254	0.0501911	0.020991	0.156383	0.122348
chr2	60893110	60893208	785733	0	+	0.255102	[0,0.28]	chr2	88387	9	INTRON	INTRON	REL	ENSG00000162924.15	ENST00000295025.12:ENST00000394479.4	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.38387	4.428205	4.47254	0.0501911	0.020991	0.156383	0.122348
chr2	158498391	158498491	897554	0	+	0.28	[0,0.28]	chr2	99341	397	INTRON	INTRON	PKP4	ENSG00000144283.23	ENST00000389759.8:ENST00000426248.7:ENST00000389757.7:ENST00000457109.5:ENST00000452162.5:ENST00000411900.5:ENST00000421462.5:ENST00000462335.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	32	2	4.38387	4.428205	4.47254	0.0501911	0.020991	0.156383	0.122348
chr9	69726105	69726204	4263619	0	-	0.262626	[0,0.28]	chr9	392381	21	INTRON	INTRON	PTAR1	ENSG00000188647.13	ENST00000377200.9:ENST00000340434.5	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.38387	4.428205	4.47254	0.0501911	0.020991	0.156383	0.122348
chr9	109064076	109064176	4312037	0	-	0.24	[0,0.28]	chr9	396338	2	SS5_PROX	SS5_PROX:INTRON	TMEM245	ENSG00000106771.13	ENST00000374586.8:ENST00000413712.6:ENST00000491854.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	32	2	4.38387	4.428205	4.47254	0.0501911	0.020991	0.156383	0.122348
chr20	58652538	58652638	7290185	0	+	0.49	(0.476,0.515]	chr20	741708	4	SS5_PROX	SS5_PROX:INTRON	STX16	ENSG00000124222.22	ENST00000361830.7:ENST00000355957.9:ENST00000458280.5:ENST00000312283.12:ENST00000412911.5:ENST00000371141.8:ENST00000359617.8:ENST00000460655.5:ENST00000476384.5:ENST00000483434.5:ENST00000496117.5:ENST00000490700.5:ENST00000371132.8:ENST00000496003.5:ENST00000467096.5:ENST00000358029.8:ENST00000464640.5:ENST00000493301.5:ENST00000468590.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	61	2	3.19119	4.42812	5.66505	0.00325748	2.08835e-4	0.0524329	0.0131276
chr1	21166261	21166361	393524	0	-	0.47	(0.44,0.476]	chr1	46836	533	INTRON	INTRON	EIF4G3	ENSG00000075151.24	ENST00000374935.7:ENST00000602326.6:ENST00000685872.1:ENST00000686579.1:ENST00000688741.1:ENST00000400422.6:ENST00000634879.2:ENST00000693470.1:ENST00000685814.1:ENST00000356916.7:ENST00000682284.1:ENST00000438975.5:ENST00000411888.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	29	2	4.33346	4.42808	4.5227	0.0128818	0.0120349	0.0962115	0.0926667
chr12	117044870	117044969	5425902	0	-	0.444444	(0.44,0.476]	chr12	518341	25	INTRON	INTRON	TESC	ENSG00000088992.18	ENST00000470612.5:ENST00000335209.12:ENST00000541210.5:ENST00000549210.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	29	2	4.33346	4.42808	4.5227	0.0128818	0.0120349	0.0962115	0.0926667
chr17	61910529	61910623	6809426	0	-	0.457447	(0.44,0.476]	chr17	672746	5	UTR3	UTR3:EXON_MRNA:INTRON	INTS2	ENSG00000108506.13	ENST00000251334.7:ENST00000617492.4:ENST00000444766.7:ENST00000646745.1:ENST00000647009.1:ENST00000646954.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	29	2	4.33346	4.42808	4.5227	0.0128818	0.0120349	0.0962115	0.0926667
chr22	17642680	17642780	7475059	0	+	0.45	(0.44,0.476]	chr22	762152	34	INTRON	INTRON	BCL2L13	ENSG00000099968.18	ENST00000399781.5:ENST00000399782.5:ENST00000337612.9:ENST00000418951.6:ENST00000538149.5:ENST00000543133.5:ENST00000611738.4:ENST00000616863.4:ENST00000618481.4:ENST00000498133.5:ENST00000317582.10:ENST00000464649.1:ENST00000493680.5:ENST00000355028.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	29	2	4.33346	4.42808	4.5227	0.0128818	0.0120349	0.0962115	0.0926667
chr4	56456222	56456320	1962829	0	+	0.469388	(0.44,0.476]	chr4	196913	21	INTRON	INTRON	PAICS	ENSG00000128050.9	ENST00000514888.5:ENST00000264221.6:ENST00000505164.5:ENST00000399688.7:ENST00000512576.3	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	4.33346	4.42808	4.5227	0.0128818	0.0120349	0.0962115	0.0926667
chr6	154409842	154409942	3250071	0	-	0.47	(0.44,0.476]	chr6	302004	1	SS5_PROX	SS5_PROX:INTRON	CNKSR3	ENSG00000153721.19	ENST00000607772.6:ENST00000433165.6:ENST00000479339.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	29	2	4.33346	4.42808	4.5227	0.0128818	0.0120349	0.0962115	0.0926667
chr7	44620012	44620111	3314419	0	+	0.464646	(0.44,0.476]	chr7	307883	130	INTRON	INTRON	OGDH	ENSG00000105953.16	ENST00000439616.6:ENST00000443864.6:ENST00000449767.5:ENST00000447398.5:ENST00000419661.5:ENST00000222673.6:ENST00000444676.5	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	4.33346	4.42808	4.5227	0.0128818	0.0120349	0.0962115	0.0926667
chr9	110248925	110249025	4313921	0	-	0.45	(0.44,0.476]	chr9	396564	37	INTRON	INTRON	TXN	ENSG00000136810.13	ENST00000374517.6:ENST00000374515.9	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	4.33346	4.42808	4.5227	0.0128818	0.0120349	0.0962115	0.0926667
chr15	66616312	66616411	6051124	0	+	0.494949	(0.476,0.515]	chr15	576221	337	INTRON	INTRON	LINC01169	ENSG00000259471.1	ENST00000558797.1	lncRNA	lncRNA	lncRNA	lncRNA	2	82	2	2.72507	4.42803	6.13099	0.0029369	2.19436e-5	0.0496505	0.00381314
chr12	76079535	76079635	5370174	0	-	0.28	[0,0.28]	chr12	512329	49	INTRON	INTRON	NAP1L1	ENSG00000187109.15	ENST00000618691.5:ENST00000393263.7:ENST00000431879.7:ENST00000547773.5:ENST00000544816.5:ENST00000542344.5:ENST00000535020.6:ENST00000549596.5:ENST00000552342.5:ENST00000548044.5:ENST00000550934.5:ENST00000551992.5:ENST00000548273.5:ENST00000551600.5:ENST00000547704.5:ENST00000549988.5:ENST00000547479.5:ENST00000549479.1:ENST00000551500.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	136	2	2.13236	4.427955	6.72355	0.017376	3.07627e-6	0.104294	0.00113156
chr8	85218625	85218706	3980194	0	-	0.506173	(0.476,0.515]	chr8	364735	1	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	RBIS	ENSG00000176731.12	ENST00000619594.5:ENST00000614462.4:ENST00000612977.4:ENST00000545322.5:ENST00000612809.4:ENST00000615697.4:ENST00000523281.5:ENST00000523245.1:ENST00000321777.5:ENST00000518786.1:ENST00000521286.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	66	2	3.67544	4.4279150000000005	5.18039	6.58744e-4	5.51624e-4	0.0232396	0.0216014
chr16	67601640	67601740	6368003	0	+	0.33	(0.32,0.35]	chr16	611823	287	INTRON	INTRON	CTCF	ENSG00000102974.16	ENST00000646076.1:ENST00000644852.1:ENST00000264010.10:ENST00000401394.6:ENST00000646771.1:ENST00000642847.1:ENST00000644753.1:ENST00000642819.1:ENST00000645306.1:ENST00000643892.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	31	2	4.16186	4.42783	4.6938	0.026079	0.0137794	0.133676	0.0949306
chr2	135458365	135458465	1232772	0	-	0.33	(0.32,0.35]	chr2	131237	672	INTRON	INTRON	ZRANB3	ENSG00000121988.18	ENST00000264159.11:ENST00000401392.5:ENST00000536680.5:ENST00000403017.2:ENST00000452187.6:ENST00000492193.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	31	2	4.16186	4.42783	4.6938	0.026079	0.0137794	0.133676	0.0949306
chr20	47220921	47221018	7348135	0	-	0.340206	(0.32,0.35]	chr20	749236	2	SS5_PROX	SS5_PROX:INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000467200.6:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.16186	4.42783	4.6938	0.026079	0.0137794	0.133676	0.0949306
chr5	140493531	140493630	2503766	0	+	0.333333	(0.32,0.35]	chr5	239246	61	INTRON	INTRON	ANKHD1	ENSG00000131503.21	ENST00000297183.10:ENST00000360839.7:ENST00000421134.5:ENST00000246149.10:ENST00000412116.5:ENST00000506755.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	31	2	4.16186	4.42783	4.6938	0.026079	0.0137794	0.133676	0.0949306
chr6	109375729	109375807	3185846	0	-	0.320513	(0.32,0.35]	chr6	296665	3	SS5_PROX	SS5_PROX:INTRON	CD164	ENSG00000135535.17	ENST00000310786.10:ENST00000413644.6:ENST00000504373.2:ENST00000324953.9:ENST00000275080.11:ENST00000499860.6:ENST00000512821.5:ENST00000506649.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	31	2	4.16186	4.42783	4.6938	0.026079	0.0137794	0.133676	0.0949306
chr21	5563226	5563326	7364228	0	+	0.3	(0.28,0.32]	chr21	751617	90	INTRON	INTRON	ENSG00000274333	ENSG00000274333.4	ENST00000619252.4:ENST00000623449.3:ENST00000624627.3:ENST00000623436.3:ENST00000624368.3:ENST00000623914.3:ENST00000624516.1:ENST00000624412.3:ENST00000622939.3	lncRNA	lncRNA	lncRNA	lncRNA	1	69	2	3.22074	4.42779	5.63484	0.00362783	0.00108324	0.055479	0.0303015
chr7	138530721	138530820	3435352	0	+	0.444444	(0.44,0.476]	chr7	319991	11	INTRON	INTRON	TRIM24	ENSG00000122779.18	ENST00000343526.9:ENST00000415680.6:ENST00000497516.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	64	2	3.22192	4.42765	5.63338	0.00360821	7.86121e-5	0.0533855	0.00738014
chr1	47347705	47347805	97713	0	+	0.53	(0.515,0.57]	chr1	13138	132	INTRON	INTRON	CMPK1	ENSG00000162368.14	ENST00000371873.10:ENST00000371871.8:ENST00000471289.2:ENST00000450808.2:ENST00000371870.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	28	2	4.08538	4.42761	4.76984	0.0253843	0.00198034	0.12011	0.0411469
chr10	86495802	86495902	4659103	0	-	0.53	(0.515,0.57]	chr10	429282	215	INTRON	INTRON	WAPL	ENSG00000062650.20	ENST00000298767.10	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.08538	4.42761	4.76984	0.0253843	0.00198034	0.12011	0.0411469
chr13	19112208	19112308	5551698	0	-	0.41	(0.408,0.44]	chr13	530618	376	INTRON	INTRON	ENSG00000287861	ENSG00000287861.1	ENST00000657315.1	lncRNA	lncRNA	lncRNA	lncRNA	0	32	2	3.83494	4.42761	5.02028	0.0411442	0.00303216	0.161534	0.0493883
chr19	48904454	48904554	7087812	0	+	0.57	(0.515,0.57]	chr19	709335	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	NUCB1	ENSG00000104805.16	ENST00000405315.9:ENST00000407032.5:ENST00000452087.5:ENST00000485798.5:ENST00000443560.1:ENST00000411700.5:ENST00000451312.5:ENST00000424608.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	28	2	4.08538	4.42761	4.76984	0.0253843	0.00198034	0.12011	0.0411469
chrX	130403501	130403601	7722614	0	+	0.52	(0.515,0.57]	chrX	789983	3	SS3_PROX	SS3_PROX:INTRON	RBMX2	ENSG00000134597.17	ENST00000305536.11:ENST00000469953.1:ENST00000370947.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	28	2	4.08538	4.42761	4.76984	0.0253843	0.00198034	0.12011	0.0411469
chr17	70107573	70107673	6828524	0	-	0.42	(0.408,0.44]	chr17	675009	344	INTRON	INTRON	ENSG00000230258	ENSG00000230258.6	ENST00000435112.5	lncRNA	lncRNA	lncRNA	lncRNA	1	60	2	3.46104	4.42712	5.3932	0.00105552	7.81492e-4	0.0299229	0.0257168
chr17	82552850	82552950	6692936	0	+	0.43	(0.408,0.44]	chr17	654627	322	INTRON	INTRON	FOXK2	ENSG00000141568.21	ENST00000473637.6:ENST00000335255.10:ENST00000527313.6:ENST00000570585.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	60	2	3.46104	4.42712	5.3932	0.00105552	7.81492e-4	0.0299229	0.0257168
chr9	114503699	114503799	4321951	0	-	0.49	(0.476,0.515]	chr9	397766	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	WHRN	ENSG00000095397.16	ENST00000362057.4:ENST00000673811.1:ENST00000374057.3:ENST00000480518.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	60	2	3.40003	4.426965	5.4539	0.00139193	5.16081e-4	0.0341261	0.0208667
chr1	100224939	100225039	516263	0	-	0.53	(0.515,0.57]	chr1	60556	58	INTRON	INTRON	DBT	ENSG00000137992.15	ENST00000370132.8:ENST00000681617.1:ENST00000681780.1:ENST00000370131.3	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.17037	4.426735	4.6831	0.0139194	0.00471288	0.10247	0.0600108
chr1	223953244	223953341	643399	0	-	0.515464	(0.515,0.57]	chr1	75969	20	EXON_MRNA	EXON_MRNA:INTRON	GTF2IP20	ENSG00000272645.4	ENST00000608760.3:ENST00000634905.2	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript	0	28	2	4.17037	4.426735	4.6831	0.0139194	0.00471288	0.10247	0.0600108
chr17	57356021	57356121	6633749	0	+	0.55	(0.515,0.57]	chr17	648024	453	INTRON	INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000581776.5:ENST00000674961.1:ENST00000582453.5:ENST00000675656.1:ENST00000322684.7:ENST00000579590.5:ENST00000676073.1:ENST00000675822.1:ENST00000442934.6:ENST00000579180.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	28	2	4.17037	4.426735	4.6831	0.0139194	0.00471288	0.10247	0.0600108
chr22	21596556	21596656	7481993	0	+	0.54	(0.515,0.57]	chr22	763238	32	INTRON	INTRON	UBE2L3	ENSG00000185651.16	ENST00000458578.6:ENST00000545681.2:ENST00000696046.1:ENST00000342192.9:ENST00000496722.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	28	2	4.17037	4.426735	4.6831	0.0139194	0.00471288	0.10247	0.0600108
chr17	78195156	78195255	6682027	0	+	0.464646	(0.44,0.476]	chr17	652698	20	INTRON	INTRON	AFMID	ENSG00000183077.16	ENST00000591256.5:ENST00000409257.10:ENST00000327898.9:ENST00000591952.5:ENST00000588800.5:ENST00000588199.5:ENST00000589107.5:ENST00000592988.5:ENST00000589256.5:ENST00000586542.5:ENST00000586731.1:ENST00000591538.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	60	2	3.36231	4.42664	5.49097	0.00161678	4.8612e-4	0.0369204	0.0203841
chr1	165832126	165832225	243794	0	+	0.373737	(0.35,0.378]	chr1	29139	38	INTRON	INTRON	UCK2	ENSG00000143179.16	ENST00000367879.9:ENST00000642653.1	protein_coding	protein_coding	protein_coding	protein_coding	2	92	2	2.91317	4.4265799999999995	5.93999	0.00189062	2.49725e-5	0.0392053	0.00392542
chr7	99037887	99037987	3582065	0	-	0.43	(0.408,0.44]	chr7	333617	1	SS5_PROX	SS5_PROX:INTRON	SMURF1	ENSG00000198742.10	ENST00000361368.7:ENST00000361125.1	protein_coding	protein_coding	protein_coding	protein_coding	1	60	2	3.50731	4.426395	5.34548	9.40657e-4	8.5918e-4	0.0280776	0.0265787
chr1	42687238	42687337	83991	0	+	0.393939	(0.378,0.408]	chr1	11020	34	INTRON	INTRON	YBX1	ENSG00000065978.19	ENST00000321358.12:ENST00000332220.10:ENST00000436427.1:ENST00000467957.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	126	2	2.19294	4.426055	6.65917	0.00254418	2.22523e-6	0.0465115	0.00104005
chr1	235205489	235205589	662620	0	-	0.28	[0,0.28]	chr1	78465	90	INTRON	INTRON	ARID4B	ENSG00000054267.22	ENST00000349213.7:ENST00000366603.6:ENST00000264183.9:ENST00000421364.5:ENST00000491632.5:ENST00000444620.2:ENST00000471257.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	32	2	4.29536	4.42577	4.55618	0.0590175	0.0171034	0.167915	0.110899
chr10	74053518	74053618	4455057	0	+	0.18	[0,0.28]	chr10	411397	100	INTRON	INTRON	VCL	ENSG00000035403.18	ENST00000623461.3:ENST00000372755.7:ENST00000624354.3:ENST00000211998.10:ENST00000478896.2:ENST00000461383.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	32	2	4.29536	4.42577	4.55618	0.0590175	0.0171034	0.167915	0.110899
chr14	27578637	27578737	5848638	0	-	0.28	[0,0.28]	chr14	556260	2561	INTRON	INTRON	ENSG00000258932	ENSG00000258932.5	ENST00000553392.5:ENST00000554904.5:ENST00000556890.1:ENST00000555797.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	0	32	2	4.29536	4.42577	4.55618	0.0590175	0.0171034	0.167915	0.110899
chr2	32420856	32420956	731424	0	+	0.27	[0,0.28]	chr2	84325	43	INTRON	INTRON	BIRC6	ENSG00000115760.15	ENST00000421745.7:ENST00000648282.1	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.29536	4.42577	4.55618	0.0590175	0.0171034	0.167915	0.110899
chr6	140217864	140217964	2968634	0	+	0.27	[0,0.28]	chr6	279015	688	INTRON	INTRON	ENSG00000288714	ENSG00000288714.1	ENST00000683950.1	lncRNA	lncRNA	lncRNA	lncRNA	0	32	2	4.29536	4.42577	4.55618	0.0590175	0.0171034	0.167915	0.110899
chr7	152320625	152320724	3680135	0	-	0.20202	[0,0.28]	chr7	341641	49	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000684262.1:ENST00000682301.1:ENST00000452749.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	32	2	4.29536	4.42577	4.55618	0.0590175	0.0171034	0.167915	0.110899
chr6	158615174	158615273	3022159	0	+	0.393939	(0.378,0.408]	chr6	281847	50	INTRON	INTRON	TMEM181	ENSG00000146433.10	ENST00000367090.4:ENST00000684151.1	protein_coding	protein_coding	protein_coding	protein_coding	3	98	2	2.66822	4.42575	6.18328	0.00112898	2.87441e-5	0.0308465	0.0044481
chr7	140894184	140894284	3663428	0	-	0.39	(0.378,0.408]	chr7	340105	436	INTRON	INTRON	BRAF	ENSG00000157764.14	ENST00000496384.7:ENST00000644969.2:ENST00000646891.1:ENST00000644905.1:ENST00000642228.1:ENST00000288602.11:ENST00000646730.1:ENST00000497784.2:ENST00000642272.1:ENST00000642808.1:ENST00000643790.1:ENST00000469930.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	61	2	3.4275	4.42554	5.42358	0.00126053	8.39231e-4	0.03295	0.0266487
chr12	53470567	53470662	5143087	0	+	0.421053	(0.408,0.44]	chr12	485442	14	INTRON	INTRON	PCBP2	ENSG00000197111.16	ENST00000546463.6:ENST00000437231.5:ENST00000447282.5:ENST00000359282.9:ENST00000549863.5:ENST00000359462.9:ENST00000552296.6:ENST00000552819.5:ENST00000455667.7:ENST00000439930.7:ENST00000548933.5:ENST00000562264.5:ENST00000550585.5:ENST00000553064.6:ENST00000547859.2:ENST00000547048.5:ENST00000550733.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	29	2	4.23096	4.425525	4.62009	0.0278028	0.00504155	0.123904	0.0646039
chr17	16200115	16200215	6735085	0	-	0.41	(0.408,0.44]	chr17	660758	10	INTRON	INTRON	NCOR1	ENSG00000141027.22	ENST00000268712.8:ENST00000411510.5:ENST00000582357.5:ENST00000436828.5:ENST00000460276.5:ENST00000585296.1:ENST00000430577.2:ENST00000466825.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	29	2	4.23096	4.425525	4.62009	0.0278028	0.00504155	0.123904	0.0646039
chr17	82263205	82263304	6852725	0	-	0.424242	(0.408,0.44]	chr17	679151	73	INTRON	INTRON	CSNK1D	ENSG00000141551.15	ENST00000398519.9:ENST00000314028.11:ENST00000581241.5:ENST00000392334.6:ENST00000403276.7:ENST00000582844.5:ENST00000580446.1:ENST00000581660.5:ENST00000578194.5:ENST00000579316.5:ENST00000584472.5:ENST00000580061.5:ENST00000585026.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	29	2	4.23096	4.425525	4.62009	0.0278028	0.00504155	0.123904	0.0646039
chr21	45121159	45121259	7418322	0	+	0.41	(0.408,0.44]	chr21	756280	2	SS5_PROX	SS5_PROX:INTRON	ADARB1	ENSG00000197381.17	ENST00000462214.5:ENST00000460734.5:ENST00000348831.9:ENST00000389861.7:ENST00000389863.8:ENST00000492414.5:ENST00000496664.5:ENST00000437626.5:ENST00000449478.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	29	2	4.23096	4.425525	4.62009	0.0278028	0.00504155	0.123904	0.0646039
chr22	28441885	28441985	7570554	0	-	0.42	(0.408,0.44]	chr22	774283	1349	INTRON	INTRON	TTC28	ENSG00000100154.15	ENST00000397906.7:ENST00000490475.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	29	2	4.23096	4.425525	4.62009	0.0278028	0.00504155	0.123904	0.0646039
chr8	42509715	42509814	3942259	0	-	0.424242	(0.408,0.44]	chr8	361320	72	INTRON	INTRON	SLC20A2	ENSG00000168575.10	ENST00000342228.7:ENST00000520179.5:ENST00000524211.1:ENST00000518717.1:ENST00000518384.1:ENST00000524237.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	29	2	4.23096	4.425525	4.62009	0.0278028	0.00504155	0.123904	0.0646039
chr14	55292048	55292148	5726002	0	+	0.23	[0,0.28]	chr14	543454	66	INTRON	INTRON	FBXO34	ENSG00000178974.11	ENST00000681400.1:ENST00000681904.1:ENST00000679934.1:ENST00000681074.1:ENST00000680682.1:ENST00000680658.1:ENST00000313833.5:ENST00000554940.1:ENST00000440021.1:ENST00000555087.1:ENST00000557647.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	32	2	4.38376	4.425509999999999	4.46726	0.0427997	0.0258536	0.148082	0.133676
chr15	87400206	87400306	6253549	0	-	0.27	[0,0.28]	chr15	596790	730	INTRON	INTRON	ENSG00000259560	ENSG00000259560.2	ENST00000665121.1:ENST00000656130.1	lncRNA	lncRNA	lncRNA	lncRNA	0	32	2	4.38376	4.425509999999999	4.46726	0.0427997	0.0258536	0.148082	0.133676
chr2	180750077	180750177	934158	0	+	0.27	[0,0.28]	chr2	102576	250	INTRON	INTRON	SCHLAP1	ENSG00000281131.1	ENST00000629145.1	lncRNA	lncRNA	lncRNA	lncRNA	0	32	2	4.38376	4.425509999999999	4.46726	0.0427997	0.0258536	0.148082	0.133676
chr4	128091512	128091612	2042903	0	+	0.28	[0,0.28]	chr4	202876	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	LARP1B	ENSG00000138709.19	ENST00000512292.5:ENST00000326639.11:ENST00000508819.5:ENST00000394288.7:ENST00000432347.6:ENST00000649983.1:ENST00000650359.1:ENST00000648358.1:ENST00000507377.1	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.38376	4.425509999999999	4.46726	0.0427997	0.0258536	0.148082	0.133676
chr4	152799109	152799209	2065317	0	+	0.25	[0,0.28]	chr4	204403	185	INTRON	INTRON	ARFIP1	ENSG00000164144.16	ENST00000451320.6:ENST00000429148.6:ENST00000353617.7:ENST00000405727.6:ENST00000356064.3:ENST00000510831.5:ENST00000509413.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	32	2	4.38376	4.425509999999999	4.46726	0.0427997	0.0258536	0.148082	0.133676
chr7	64543206	64543306	3537120	0	-	0.24	[0,0.28]	chr7	329905	1	SS5_PROX	SS5_PROX:INTRON	ZNF680	ENSG00000173041.12	ENST00000309683.11:ENST00000476563.1:ENST00000470847.1:ENST00000447137.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	32	2	4.38376	4.425509999999999	4.46726	0.0427997	0.0258536	0.148082	0.133676
chr7	152186221	152186311	3678745	0	-	0.277778	[0,0.28]	chr7	341484	2	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000360104.8:ENST00000262189.11:ENST00000683200.1:ENST00000682283.1:ENST00000473186.5:ENST00000679882.1:ENST00000680969.1:ENST00000681033.1:ENST00000682176.1:ENST00000683159.1:ENST00000679645.1:ENST00000681635.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	32	2	4.38376	4.425509999999999	4.46726	0.0427997	0.0258536	0.148082	0.133676
chr1	112649922	112650013	186633	0	+	0.296703	(0.28,0.32]	chr1	20650	6	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	CAPZA1	ENSG00000116489.13	ENST00000485542.5:ENST00000476936.5:ENST00000263168.4:ENST00000498626.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	75	2	3.23355	4.42534	5.61713	0.004869	2.86819e-4	0.0607461	0.0150568
chr3	32749228	32749328	1393769	0	+	0.29	(0.28,0.32]	chr3	145926	114	INTRON	INTRON	CNOT10	ENSG00000182973.20	ENST00000331889.10:ENST00000328834.10:ENST00000435630.5:ENST00000454516.7:ENST00000416457.5:ENST00000430408.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	75	2	3.23355	4.42534	5.61713	0.004869	2.86819e-4	0.0607461	0.0150568
chr2	214775602	214775702	1325843	0	-	0.37	(0.35,0.378]	chr2	138620	44	INTRON	INTRON	BARD1	ENSG00000138376.11	ENST00000260947.9:ENST00000617164.5:ENST00000619009.5:ENST00000613374.5:ENST00000650978.1:ENST00000613706.5:ENST00000421162.2:ENST00000613192.2:ENST00000620057.4:ENST00000455743.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	101	2	2.66007	4.4253149999999994	6.19056	0.00123668	3.96164e-5	0.0326427	0.00537148
chr6	4824698	4824798	2791345	0	+	0.28	[0,0.28]	chr6	263598	475	INTRON	INTRON	CDYL	ENSG00000153046.18	ENST00000328908.9:ENST00000491864.1:ENST00000440139.5:ENST00000483019.1:ENST00000397588.8:ENST00000472453.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	253	2	3.95838	4.425205	4.89203	3.74727e-5	1.47162e-6	0.00522669	7.25558e-4
chr2	174368429	174368529	1271072	0	-	0.26	[0,0.28]	chr2	134338	95	INTRON	INTRON	CIR1	ENSG00000138433.16	ENST00000342016.8:ENST00000377973.4	protein_coding	protein_coding	protein_coding	protein_coding	1	76	2	3.63981	4.425175	5.21054	0.00758653	8.51767e-4	0.0749063	0.0264928
chr19	52064293	52064393	7205544	0	-	0.42	(0.408,0.44]	chr19	731275	4	SS5_PROX	SS5_PROX:INTRON	ZNF432	ENSG00000256087.7	ENST00000600368.5:ENST00000598446.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	106	2	2.8411	4.42507	6.00904	6.58235e-4	1.03233e-5	0.0234118	0.00235018
chr1	28041477	28041576	408533	0	-	0.434343	(0.408,0.44]	chr1	49203	22	INTRON	INTRON	EYA3	ENSG00000158161.16	ENST00000373871.8:ENST00000540618.5:ENST00000436342.6:ENST00000373864.5:ENST00000373863.3:ENST00000471498.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	29	2	4.334	4.42502	4.51604	0.0137419	0.011982	0.0962115	0.0949306
chr10	92008463	92008551	4489599	0	+	0.420455	(0.408,0.44]	chr10	413426	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	BTAF1	ENSG00000095564.15	ENST00000265990.12	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	4.334	4.42502	4.51604	0.0137419	0.011982	0.0962115	0.0949306
chr13	42066723	42066822	5475308	0	+	0.414141	(0.408,0.44]	chr13	524589	1	INTRON	INTRON	DGKH	ENSG00000102780.17	ENST00000379274.6:ENST00000337343.9:ENST00000261491.9	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	4.334	4.42502	4.51604	0.0137419	0.011982	0.0962115	0.0949306
chr16	2543813	2543913	6278919	0	+	0.43	(0.408,0.44]	chr16	600618	44	INTRON	INTRON	PDPK1	ENSG00000140992.19	ENST00000566659.1:ENST00000441549.7:ENST00000268673.11:ENST00000474706.6:ENST00000342085.9:ENST00000570136.5:ENST00000492021.6:ENST00000389224.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	29	2	4.334	4.42502	4.51604	0.0137419	0.011982	0.0962115	0.0949306
chr7	67242140	67242240	3541253	0	-	0.43	(0.408,0.44]	chr7	330352	36	INTRON	INTRON	PMS2P4	ENSG00000067601.9	ENST00000685171.1:ENST00000688358.1:ENST00000692496.1:ENST00000685583.1:ENST00000688710.1:ENST00000684859.1:ENST00000685318.1:ENST00000691713.1:ENST00000686389.1:ENST00000690253.1:ENST00000688815.1:ENST00000692171.1:ENST00000692360.1:ENST00000689281.1:ENST00000690241.1:ENST00000689629.1:ENST00000689043.1:ENST00000688809.1:ENST00000687432.1:ENST00000687680.1:ENST00000686900.1:ENST00000691782.1:ENST00000693356.1:ENST00000691384.1:ENST00000690440.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	29	2	4.334	4.42502	4.51604	0.0137419	0.011982	0.0962115	0.0949306
chr8	25437682	25437781	3926130	0	-	0.434343	(0.408,0.44]	chr8	359418	8	INTRON	INTRON	KCTD9	ENSG00000104756.16	ENST00000221200.9:ENST00000519665.5:ENST00000523140.5:ENST00000522493.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	29	2	4.334	4.42502	4.51604	0.0137419	0.011982	0.0962115	0.0949306
chr6	17761077	17761177	3066236	0	-	0.35	(0.32,0.35]	chr6	284881	2	SS3_PROX	SS3_PROX:INTRON	KIF13A	ENSG00000137177.20	ENST00000378814.9:ENST00000502297.5	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	3.77344	4.4248650000000005	5.07629	0.0596635	0.00468114	0.189982	0.0600108
chr1	6805884	6805984	5845	0	+	0.32	(0.28,0.32]	chr1	1124	200	INTRON	INTRON	CAMTA1	ENSG00000171735.19	ENST00000303635.12:ENST00000490738.5:ENST00000476163.5:ENST00000473578.5:ENST00000557126.5:ENST00000467404.6:ENST00000461311.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	31	2	4.2432	4.42465	4.6061	0.0479043	0.0102724	0.153019	0.089002
chr1	229507112	229507203	653322	0	-	0.307692	(0.28,0.32]	chr1	77411	6	INTRON	INTRON	NUP133	ENSG00000069248.12	ENST00000261396.6:ENST00000366678.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	31	2	4.2432	4.42465	4.6061	0.0479043	0.0102724	0.153019	0.089002
chr13	28677734	28677834	5462614	0	+	0.32	(0.28,0.32]	chr13	523379	3	SS3_PROX	SS3_PROX:INTRON	POMP	ENSG00000132963.8	ENST00000460403.1:ENST00000380842.5	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.2432	4.42465	4.6061	0.0479043	0.0102724	0.153019	0.089002
chr16	72088686	72088786	6514937	0	-	0.31	(0.28,0.32]	chr16	631237	3	SS5_PROX	SS5_PROX:INTRON	TXNL4B	ENSG00000140830.9	ENST00000562153.5:ENST00000268483.8:ENST00000423037.5:ENST00000426362.6:ENST00000565171.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	31	2	4.2432	4.42465	4.6061	0.0479043	0.0102724	0.153019	0.089002
chr19	23794447	23794546	7042750	0	+	0.313131	(0.28,0.32]	chr19	702227	71	INTRON	INTRON	RPSAP58	ENSG00000288920.1	ENST00000471224.5:ENST00000692590.1:ENST00000475499.2:ENST00000686829.1:ENST00000689525.1:ENST00000691397.1:ENST00000688405.1:ENST00000687994.1:ENST00000484897.4:ENST00000685490.1:ENST00000462186.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	31	2	4.2432	4.42465	4.6061	0.0479043	0.0102724	0.153019	0.089002
chr19	57905674	57905773	7216860	0	-	0.313131	(0.28,0.32]	chr19	733160	36	INTRON	INTRON	ZNF417	ENSG00000173480.11	ENST00000594396.1	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.2432	4.42465	4.6061	0.0479043	0.0102724	0.153019	0.089002
chr2	20685190	20685279	1077740	0	-	0.292135	(0.28,0.32]	chr2	115120	4	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	LDAH	ENSG00000118961.15	ENST00000619656.4:ENST00000541941.5:ENST00000440866.6:ENST00000435420.6:ENST00000403006.6:ENST00000237822.8:ENST00000381090.7:ENST00000470099.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	31	2	4.2432	4.42465	4.6061	0.0479043	0.0102724	0.153019	0.089002
chr2	181017623	181017723	936342	0	+	0.3	(0.28,0.32]	chr2	102627	277	INTRON	INTRON	UBE2E3	ENSG00000170035.16	ENST00000602303.5:ENST00000602959.5:ENST00000602479.5:ENST00000392415.6:ENST00000602291.5:ENST00000410062.9:ENST00000602499.5:ENST00000602710.5:ENST00000602762.5:ENST00000602888.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	31	2	4.2432	4.42465	4.6061	0.0479043	0.0102724	0.153019	0.089002
chr7	65895038	65895137	3323095	0	+	0.292929	(0.28,0.32]	chr7	309012	211	INTRON	INTRON	VKORC1L1	ENSG00000196715.7	ENST00000360768.5:ENST00000648187.1:ENST00000648179.1:ENST00000434382.2	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.2432	4.42465	4.6061	0.0479043	0.0102724	0.153019	0.089002
chr7	102842332	102842431	3590041	0	-	0.313131	(0.28,0.32]	chr7	335153	90	INTRON	INTRON	FBXL13	ENSG00000161040.18	ENST00000694871.1:ENST00000694870.1:ENST00000448002.6:ENST00000379305.7:ENST00000440067.3:ENST00000456695.6:ENST00000313221.8:ENST00000436908.5:ENST00000455112.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	31	2	4.2432	4.42465	4.6061	0.0479043	0.0102724	0.153019	0.089002
chr7	140373852	140373951	3661032	0	-	0.313131	(0.28,0.32]	chr7	339845	38	INTRON	INTRON	SLC37A3	ENSG00000157800.18	ENST00000477571.5:ENST00000326232.14:ENST00000447932.6:ENST00000340308.7:ENST00000460560.5:ENST00000490760.5:ENST00000464865.5:ENST00000469193.5:ENST00000461089.5:ENST00000462881.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	31	2	4.2432	4.42465	4.6061	0.0479043	0.0102724	0.153019	0.089002
chrX	40670773	40670871	7806102	0	-	0.285714	(0.28,0.32]	chrX	795899	36	INTRON	INTRON	MED14	ENSG00000180182.11	ENST00000324817.6	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.2432	4.42465	4.6061	0.0479043	0.0102724	0.153019	0.089002
chrX	130157083	130157179	7887952	0	-	0.3125	(0.28,0.32]	chrX	803165	6	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	AIFM1	ENSG00000156709.15	ENST00000675050.1:ENST00000676229.1:ENST00000674546.1:ENST00000287295.8:ENST00000675092.1:ENST00000675427.1:ENST00000675857.1:ENST00000346424.6:ENST00000535724.6:ENST00000527892.5:ENST00000416073.7:ENST00000676328.1:ENST00000676436.1:ENST00000674997.1:ENST00000319908.8:ENST00000676048.1:ENST00000675240.1:ENST00000674555.1:ENST00000675037.1:ENST00000674722.1:ENST00000675774.1:ENST00000529877.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	31	2	4.2432	4.42465	4.6061	0.0479043	0.0102724	0.153019	0.089002
chr19	4419772	4419871	7001935	0	+	0.545455	(0.515,0.57]	chr19	694529	13	INTRON	INTRON	CHAF1A	ENSG00000167670.16	ENST00000301280.10:ENST00000587739.1:ENST00000585371.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	55	2	3.37125	4.42462	5.47799	0.00136343	2.09356e-4	0.0339121	0.0131276
chr6	157163045	157163145	3011041	0	+	0.32	(0.28,0.32]	chr6	281189	89	INTRON	INTRON	ARID1B	ENSG00000049618.24	ENST00000346085.10:ENST00000636930.2:ENST00000647938.1:ENST00000350026.10:ENST00000414678.7:ENST00000319584.11:ENST00000635849.1:ENST00000637904.1:ENST00000637810.1:ENST00000637015.1:ENST00000636426.1:ENST00000637568.1:ENST00000635957.1:ENST00000400790.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	71	2	3.74806	4.424375	5.10069	0.00610574	4.11943e-4	0.0676501	0.0181365
chr1	656727	656827	356515	0	-	0.31	(0.28,0.32]	chr1	41087	237	INTRON	INTRON	ENSG00000230021	ENSG00000230021.10	ENST00000419394.2:ENST00000634337.2:ENST00000635509.2:ENST00000648019.1:ENST00000440200.5	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	0	31	2	4.33863	4.42422	4.50981	0.0275554	0.0207276	0.123904	0.122348
chr1	100425995	100426094	173366	0	+	0.313131	(0.28,0.32]	chr1	18830	13	INTRON	INTRON	CDC14A	ENSG00000079335.20	ENST00000646665.1:ENST00000644844.1:ENST00000635056.2:ENST00000647005.1:ENST00000647203.1:ENST00000644676.1:ENST00000361544.11:ENST00000370124.8:ENST00000336454.5:ENST00000644813.1:ENST00000455467.6:ENST00000646563.1:ENST00000469387.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	31	2	4.33863	4.42422	4.50981	0.0275554	0.0207276	0.123904	0.122348
chr10	68385376	68385467	4638934	0	-	0.307692	(0.28,0.32]	chr10	426576	9	INTRON	INTRON	RUFY2	ENSG00000204130.14	ENST00000466493.5:ENST00000602465.6:ENST00000388768.6:ENST00000399200.7:ENST00000454950.6:ENST00000472394.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	31	2	4.33863	4.42422	4.50981	0.0275554	0.0207276	0.123904	0.122348
chr14	35775689	35775745	5872042	0	-	0.285714	(0.28,0.32]	chr14	557845	2	CDS	CDS:EXON_MRNA	RALGAPA1	ENSG00000174373.17	ENST00000307138.10:ENST00000389698.7:ENST00000680220.1:ENST00000554259.6:ENST00000637992.1:ENST00000382366.7:ENST00000553892.2	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.33863	4.42422	4.50981	0.0275554	0.0207276	0.123904	0.122348
chr15	56957375	56957475	6032499	0	+	0.29	(0.28,0.32]	chr15	574663	359	INTRON	INTRON	TCF12	ENSG00000140262.18	ENST00000438423.6:ENST00000267811.9:ENST00000333725.10:ENST00000560190.5:ENST00000559609.5:ENST00000558908.5:ENST00000557843.5:ENST00000557947.5:ENST00000561152.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	31	2	4.33863	4.42422	4.50981	0.0275554	0.0207276	0.123904	0.122348
chr15	59095190	59095287	6039978	0	+	0.309278	(0.28,0.32]	chr15	575063	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	RNF111	ENSG00000157450.16	ENST00000348370.9:ENST00000559209.5:ENST00000557998.5:ENST00000561186.5:ENST00000560952.1:ENST00000560080.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	31	2	4.33863	4.42422	4.50981	0.0275554	0.0207276	0.123904	0.122348
chr16	4837408	4837508	6438922	0	-	0.32	(0.28,0.32]	chr16	620202	41	INTRON	INTRON	GLYR1	ENSG00000140632.17	ENST00000321919.14:ENST00000436648.9:ENST00000588732.5:ENST00000589389.5:ENST00000591451.5:ENST00000588297.5:ENST00000587875.1:ENST00000591159.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	31	2	4.33863	4.42422	4.50981	0.0275554	0.0207276	0.123904	0.122348
chr17	46202188	46202288	6784966	0	-	0.31	(0.28,0.32]	chr17	669254	84	INTRON	INTRON	KANSL1	ENSG00000120071.15	ENST00000574590.6:ENST00000572904.6:ENST00000575318.6:ENST00000648792.1:ENST00000639150.1:ENST00000639375.1:ENST00000638269.1:ENST00000639356.1:ENST00000574655.6:ENST00000639099.1:ENST00000638902.1:ENST00000576739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	31	2	4.33863	4.42422	4.50981	0.0275554	0.0207276	0.123904	0.122348
chr22	20793374	20793466	7559011	0	-	0.304348	(0.28,0.32]	chr22	773118	1	SS3_PROX	SS3_PROX:INTRON	PI4KA	ENSG00000241973.11	ENST00000255882.11:ENST00000484220.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	31	2	4.33863	4.42422	4.50981	0.0275554	0.0207276	0.123904	0.122348
chr3	49398830	49398930	1693931	0	-	0.29	(0.28,0.32]	chr3	173707	229	INTRON	INTRON	RHOA	ENSG00000067560.14	ENST00000678200.1:ENST00000422781.6:ENST00000676712.2:ENST00000678921.2:ENST00000445425.6:ENST00000454011.7:ENST00000418115.6:ENST00000679208.1:ENST00000677684.1:ENST00000431929.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	31	2	4.33863	4.42422	4.50981	0.0275554	0.0207276	0.123904	0.122348
chr6	106224889	106224988	3177150	0	-	0.292929	(0.28,0.32]	chr6	296169	69	INTRON	INTRON	ATG5	ENSG00000057663.16	ENST00000636437.1:ENST00000636335.1:ENST00000369070.5:ENST00000369076.8:ENST00000635758.2:ENST00000360666.6:ENST00000343245.7:ENST00000646025.1:ENST00000613993.1:ENST00000476518.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	31	2	4.33863	4.42422	4.50981	0.0275554	0.0207276	0.123904	0.122348
chr6	170568373	170568465	3037526	0	+	0.315217	(0.28,0.32]	chr6	283143	5	INTRON	INTRON	TBP	ENSG00000112592.15	ENST00000540980.5:ENST00000392092.7:ENST00000230354.10:ENST00000636632.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	31	2	4.33863	4.42422	4.50981	0.0275554	0.0207276	0.123904	0.122348
chr7	105303947	105304046	3603055	0	-	0.313131	(0.28,0.32]	chr7	336154	53	INTRON	INTRON	SRPK2	ENSG00000135250.17	ENST00000393651.8:ENST00000482897.5:ENST00000460391.5:ENST00000462282.5:ENST00000465112.5:ENST00000482862.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	31	2	4.33863	4.42422	4.50981	0.0275554	0.0207276	0.123904	0.122348
chr8	31044872	31044972	3728042	0	+	0.3	(0.28,0.32]	chr8	346522	105	INTRON	INTRON	WRN	ENSG00000165392.11	ENST00000650667.1:ENST00000298139.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	31	2	4.33863	4.42422	4.50981	0.0275554	0.0207276	0.123904	0.122348
chr9	111402613	111402712	4314450	0	-	0.292929	(0.28,0.32]	chr9	396714	51	INTRON	INTRON	ECPAS	ENSG00000136813.15	ENST00000684092.1:ENST00000338205.9:ENST00000259335.8	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.33863	4.42422	4.50981	0.0275554	0.0207276	0.123904	0.122348
chr1	31313030	31313129	61321	0	+	0.424242	(0.408,0.44]	chr1	7827	25	INTRON	INTRON	ZCCHC17	ENSG00000121766.16	ENST00000618216.4:ENST00000546109.5:ENST00000616393.4:ENST00000616859.4:ENST00000615916.4:ENST00000479629.5:ENST00000373714.5:ENST00000344147.10:ENST00000627541.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	60	2	3.55215	4.424135	5.29612	0.00113523	7.01039e-4	0.0307488	0.0241881
chr1	167552987	167553087	577034	0	-	0.43	(0.408,0.44]	chr1	69964	2	SS5_PROX	SS5_PROX:INTRON	CREG1	ENSG00000143162.9	ENST00000466652.2:ENST00000370509.5	protein_coding	protein_coding	protein_coding	protein_coding	1	60	2	3.55215	4.424135	5.29612	0.00113523	7.01039e-4	0.0307488	0.0241881
chr1	100044625	100044725	171669	0	+	0.47	(0.44,0.476]	chr1	18596	10	INTRON	INTRON	ENSG00000283761:MFSD14A	ENSG00000283761.1:ENSG00000156875.14	ENST00000638792.1:ENST00000638968.1:ENST00000639040.1:ENST00000639037.1:ENST00000638779.1:ENST00000639171.1:ENST00000640238.1:ENST00000640357.1:ENST00000370152.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	81	2	3.31275	4.42357	5.53439	4.05863e-4	1.73222e-4	0.0185763	0.0114086
chr16	75393397	75393497	6528895	0	-	0.42	(0.408,0.44]	chr16	632325	15	INTRON	INTRON	CFDP1	ENSG00000153774.9	ENST00000283882.4:ENST00000612761.1:ENST00000569341.1:ENST00000570279.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	80	2	2.94481	4.423485	5.90216	0.00110214	8.66425e-5	0.03038	0.00836204
chr17	82478470	82478570	6692466	0	+	0.58	(0.57,1]	chr17	654575	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	NARF	ENSG00000141562.19	ENST00000390006.8:ENST00000345415.11:ENST00000581202.5:ENST00000374611.9:ENST00000457415.7:ENST00000581795.5:ENST00000577812.5:ENST00000581743.5:ENST00000577432.5:ENST00000582907.5:ENST00000309794.16:ENST00000578082.5:ENST00000577410.2:ENST00000579083.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	65	2	2.66249	4.423375	6.18426	9.0016e-4	6.15547e-8	0.0277303	1.07836e-4
chr1	11825569	11825655	25656	0	+	0.406977	(0.378,0.408]	chr1	2830	7	INTRON	INTRON	CLCN6	ENSG00000011021.23	ENST00000312413.10:ENST00000346436.11:ENST00000400892.3:ENST00000376496.4:ENST00000376492.3:ENST00000376490.7:ENST00000376491.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	66	2	3.35998	4.42335	5.48672	0.00230615	1.83012e-4	0.0428247	0.01176
chr4	174304769	174304869	2082793	0	+	0.29	(0.28,0.32]	chr4	205833	4	SS5_PROX	SS5_PROX:INTRON	CEP44	ENSG00000164118.13	ENST00000457424.6:ENST00000396791.7:ENST00000503780.6:ENST00000515299.5:ENST00000426172.3:ENST00000296519.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	69	2	3.54514	4.423335	5.30153	0.00332518	0.00100603	0.0512081	0.0292285
chr7	129766590	129766690	3636693	0	-	0.47	(0.44,0.476]	chr7	338158	28	INTRON	INTRON	ENSG00000286380	ENSG00000286380.1	ENST00000660838.1	lncRNA	lncRNA	lncRNA	lncRNA	2	81	2	2.78129	4.423245	6.0652	0.00229634	3.50238e-5	0.0439319	0.00499276
chr18	12987057	12987152	6876560	0	+	0.305263	(0.28,0.32]	chr18	681332	1	UTR3	UTR3:EXON_MRNA	SEH1L	ENSG00000085415.16	ENST00000262124.15:ENST00000399892.7:ENST00000590843.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	76	2	3.40041	4.42312	5.44583	0.00273088	5.8721e-4	0.0467642	0.0220073
chr9	128326693	128326791	4204083	0	+	0.571429	(0.57,1]	chr9	384234	4	INTRON	INTRON	COQ4	ENSG00000167113.11	ENST00000300452.8	protein_coding	protein_coding	protein_coding	protein_coding	6	173	2	4.24556	4.422985000000001	4.60041	3.31508e-9	6.3694e-10	1.71359e-5	3.55415e-6
chr2	48495178	48495278	778542	0	+	0.38	(0.378,0.408]	chr2	87598	1	SS3_PROX	SS3_PROX:INTRON	PPP1R21	ENSG00000162869.16	ENST00000431614.5:ENST00000294952.13:ENST00000449090.6:ENST00000281394.8:ENST00000416913.5:ENST00000455978.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	62	2	3.72397	4.422625	5.12128	0.00251746	3.23378e-4	0.0446195	0.0159645
chr7	1436043	1436142	3462028	0	-	0.353535	(0.35,0.378]	chr7	323655	5	INTRON	INTRON	MICALL2	ENSG00000164877.19	ENST00000493998.1:ENST00000496184.1:ENST00000472100.5:ENST00000297508.8:ENST00000467783.1:ENST00000467394.5:ENST00000413446.5:ENST00000479007.5:ENST00000471899.5:ENST00000470807.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	68	2	3.08431	4.422305	5.7603	0.0065853	6.3427e-5	0.0701901	0.00658818
chr3	152840255	152840354	1537028	0	+	0.262626	[0,0.28]	chr3	160072	35	UTR3	UTR3:EXON_MRNA	P2RY1	ENSG00000169860.7	ENST00000305097.6	protein_coding	protein_coding	protein_coding	protein_coding	3	120	2	2.60532	4.422245	6.23917	0.00226845	2.51349e-4	0.0437013	0.0146599
chr1	10116059	10116159	19968	0	+	0.37	(0.35,0.378]	chr1	1882	83	INTRON	INTRON	UBE4B	ENSG00000130939.20	ENST00000672724.1:ENST00000253251.12:ENST00000343090.11	protein_coding	protein_coding	protein_coding	protein_coding	1	68	2	3.33403	4.42211	5.51019	0.00272701	2.10803e-4	0.0467523	0.0126882
chr1	20754869	20754969	389534	0	-	0.26	[0,0.28]	chr1	46531	46	INTRON	INTRON	HP1BP3	ENSG00000127483.19	ENST00000438032.6:ENST00000312239.10:ENST00000375003.6:ENST00000419948.5	protein_coding	protein_coding	protein_coding	protein_coding	2	100	2	3.01286	4.4216750000000005	5.83049	0.00129799	0.00112548	0.0333764	0.0306963
chr3	138683000	138683088	1829958	0	-	0.386364	(0.378,0.408]	chr3	183947	6	INTRON	INTRON	PIK3CB	ENSG00000051382.9	ENST00000674063.1:ENST00000289153.6:ENST00000477593.5:ENST00000469284.6:ENST00000544716.5:ENST00000462898.5:ENST00000481749.5:ENST00000493568.5:ENST00000473435.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	61	2	3.56208	4.4212050000000005	5.28033	0.00143651	6.94246e-4	0.0340925	0.0240761
chr5	105224497	105224597	2694671	0	-	0.4	(0.378,0.408]	chr5	254244	2152	INTRON	INTRON	ENSG00000251574:ENSG00000253584	ENSG00000251574.8:ENSG00000253584.1	ENST00000503650.1:ENST00000522464.1	lncRNA	lncRNA	lncRNA	lncRNA	0	31	2	3.96471	4.421165	4.87762	0.032421	0.00553849	0.145026	0.0648867
chrX	41340008	41340097	7645709	0	+	0.494382	(0.476,0.515]	chrX	782500	1	UTR5	UTR5:EXON_MRNA:INTRON	DDX3X	ENSG00000215301.11	ENST00000625837.2:ENST00000626301.2:ENST00000629785.2:ENST00000630255.2:ENST00000630370.2:ENST00000630858.2:ENST00000629496.3:ENST00000610559.5:ENST00000611546.2:ENST00000478993.5:ENST00000457138.7:ENST00000644876.2:ENST00000399959.7:ENST00000644074.1:ENST00000645338.1:ENST00000646196.1:ENST00000642793.1:ENST00000646940.1:ENST00000644307.1:ENST00000645561.1:ENST00000645080.1:ENST00000642597.1:ENST00000642722.1:ENST00000644109.1:ENST00000644958.1:ENST00000646122.1:ENST00000644513.1:ENST00000645589.1:ENST00000441189.4:ENST00000646822.1:ENST00000631641.2:ENST00000615742.4:ENST00000647219.1:ENST00000646223.1:ENST00000643963.1:ENST00000646319.1:ENST00000645783.1:ENST00000642624.1:ENST00000542215.5:ENST00000644073.1:ENST00000644677.1:ENST00000615313.5:ENST00000642322.1:ENST00000622198.5:ENST00000645120.1:ENST00000646107.1:ENST00000646627.1:ENST00000645253.1:ENST00000642589.1:ENST00000645380.1:ENST00000646390.1:ENST00000642424.1:ENST00000642161.1:ENST00000645574.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	173	2	4.06418	4.420935	4.77769	1.72826e-6	1.41688e-6	7.91759e-4	7.75185e-4
chr16	74975313	74975413	6527197	0	-	0.48	(0.476,0.515]	chr16	632160	91	INTRON	INTRON	WDR59	ENSG00000103091.15	ENST00000262144.11:ENST00000616369.4:ENST00000536050.5:ENST00000568323.5:ENST00000563111.2:ENST00000562331.5:ENST00000564859.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	64	2	3.49587	4.42088	5.34589	0.00120011	3.224e-4	0.0315806	0.0159645
chr12	68823014	68823114	5163131	0	+	0.4	(0.378,0.408]	chr12	488917	2	SS3_PROX	SS3_PROX:INTRON	MDM2	ENSG00000135679.27	ENST00000258149.11:ENST00000393412.7:ENST00000311420.13:ENST00000393417.8:ENST00000258148.11:ENST00000539479.6:ENST00000523991.5:ENST00000543323.5:ENST00000393415.7:ENST00000393416.7:ENST00000481186.6:ENST00000545204.2:ENST00000544561.6:ENST00000665020.1:ENST00000666617.1:ENST00000671567.1:ENST00000393410.5:ENST00000496959.5:ENST00000299252.8:ENST00000360430.6:ENST00000517852.5:ENST00000546048.5:ENST00000540352.5:ENST00000542502.5:ENST00000537182.5:ENST00000536089.5:ENST00000393413.7:ENST00000350057.9:ENST00000348801.7:ENST00000478070.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	68	2	3.61158	4.420845	5.23011	8.34292e-4	5.72873e-4	0.0266389	0.0217398
chr6	122448064	122448164	3208500	0	-	0.35	(0.32,0.35]	chr6	298588	4	INTRON	INTRON	SERINC1	ENSG00000111897.7	ENST00000339697.5	protein_coding	protein_coding	protein_coding	protein_coding	1	77	2	2.57263	4.420165	6.2677	0.0312297	6.52727e-6	0.13151	0.00180988
chr9	112231834	112231913	4316934	0	-	0.43038	(0.408,0.44]	chr9	397028	4	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PTBP3	ENSG00000119314.16	ENST00000334318.10:ENST00000458258.5:ENST00000374257.6:ENST00000374255.6:ENST00000343327.6	protein_coding	protein_coding	protein_coding	protein_coding	1	60	2	3.31257	4.420075000000001	5.52758	0.00198621	4.54953e-4	0.0411469	0.0196892
chr21	14516195	14516293	7427900	0	-	0.27551	[0,0.28]	chr21	757750	33	INTRON	INTRON	SAMSN1	ENSG00000155307.19	ENST00000647101.1:ENST00000644288.1:ENST00000400564.5:ENST00000400566.6:ENST00000285670.7:ENST00000619120.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	167	2	2.20773	4.419595	6.63146	0.002385	5.00112e-5	0.0449918	0.00611722
chr10	116901564	116901664	4699449	0	-	0.42	(0.408,0.44]	chr10	433611	4	SS5_PROX	SS5_PROX:INTRON	SHTN1	ENSG00000187164.20	ENST00000355371.9:ENST00000615301.4:ENST00000260777.14:ENST00000497044.5:ENST00000392901.10:ENST00000392903.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	88	2	3.12171	4.41944	5.71717	6.63666e-4	5.09043e-5	0.0234815	0.00585477
chr1	88699317	88699417	155919	0	+	0.2	[0,0.28]	chr1	17045	143	INTRON	INTRON	PKN2	ENSG00000065243.20	ENST00000316005.11:ENST00000370521.8:ENST00000370513.9	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.07901	4.419325000000001	4.75964	0.0494049	0.0232081	0.174117	0.118148
chr12	1001780	1001880	5057927	0	+	0.27	[0,0.28]	chr12	477618	29	INTRON	INTRON	ERC1	ENSG00000082805.21	ENST00000611180.5:ENST00000543086.7:ENST00000360905.9:ENST00000691018.1:ENST00000690948.1:ENST00000542302.6:ENST00000546231.6:ENST00000545318.3:ENST00000347735.10:ENST00000397203.7:ENST00000536573.7:ENST00000690222.1:ENST00000686476.1:ENST00000692909.1:ENST00000592048.5:ENST00000440394.7:ENST00000545948.5:ENST00000589028.6:ENST00000589132.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	33	2	4.07901	4.419325000000001	4.75964	0.0494049	0.0232081	0.174117	0.118148
chr16	8015823	8015923	6440667	0	-	0.2	[0,0.28]	chr16	620351	82	INTRON	INTRON	ENSG00000260289	ENSG00000260289.2	ENST00000670665.1:ENST00000654046.1:ENST00000567103.2	lncRNA	lncRNA	lncRNA	lncRNA	0	33	2	4.07901	4.419325000000001	4.75964	0.0494049	0.0232081	0.174117	0.118148
chr16	66660364	66660464	6501546	0	-	0.25	[0,0.28]	chr16	628968	234	INTRON	INTRON	CMTM4	ENSG00000183723.13	ENST00000394106.7:ENST00000330687.8:ENST00000563952.1	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.07901	4.419325000000001	4.75964	0.0494049	0.0232081	0.174117	0.118148
chr5	139606613	139606713	2500960	0	+	0.22	[0,0.28]	chr5	239037	58	INTRON	INTRON	UBE2D2	ENSG00000131508.16	ENST00000511725.5:ENST00000505007.5:ENST00000398733.8:ENST00000510470.1:ENST00000398734.8:ENST00000505548.5:ENST00000253815.3:ENST00000511691.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	33	2	4.07901	4.419325000000001	4.75964	0.0494049	0.0232081	0.174117	0.118148
chr21	45412166	45412266	7419577	0	+	0.33	(0.32,0.35]	chr21	756409	63	INTRON	INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1	protein_coding	protein_coding	protein_coding	protein_coding	1	65	2	3.41554	4.419295	5.42305	0.00153152	0.00149027	0.0361484	0.035
chr5	71472981	71473080	2383751	0	+	0.50505	(0.476,0.515]	chr5	229887	21	INTRON	INTRON	BDP1	ENSG00000145734.20	ENST00000358731.9:ENST00000508917.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	61	2	3.13389	4.41885	5.70381	0.00405473	1.75496e-4	0.0578376	0.01216
chr8	11855510	11855606	3908731	0	-	0.375	(0.35,0.378]	chr8	358192	2	INTRON	INTRON	CTSB	ENSG00000164733.22	ENST00000677671.1:ENST00000678092.1:ENST00000679128.1:ENST00000677873.1:ENST00000676691.1:ENST00000678598.1:ENST00000353047.11:ENST00000677650.1:ENST00000526481.7:ENST00000676825.1:ENST00000678242.1:ENST00000677366.1:ENST00000677544.1:ENST00000530640.7:ENST00000677418.1:ENST00000677047.1:ENST00000676502.1:ENST00000531089.6:ENST00000678629.1:ENST00000678145.1:ENST00000678929.1:ENST00000677819.1:ENST00000677415.1:ENST00000678357.1:ENST00000676755.1:ENST00000679051.1:ENST00000453527.7:ENST00000678067.1:ENST00000679140.1:ENST00000677082.1:ENST00000533455.6:ENST00000531551.5:ENST00000534382.6:ENST00000679214.1:ENST00000531502.6:ENST00000534510.6:ENST00000677865.1:ENST00000533572.6:ENST00000345125.8:ENST00000526645.6:ENST00000534149.6:ENST00000505496.7:ENST00000532392.2:ENST00000676843.1:ENST00000524500.6:ENST00000525076.6:ENST00000527215.7:ENST00000528965.2:ENST00000532656.7:ENST00000526195.6:ENST00000678615.1:ENST00000527243.6:ENST00000530296.6:ENST00000534636.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	64	2	3.10863	4.41864	5.72865	0.00470896	3.18898e-4	0.0631419	0.016499
chr11	68490071	68490171	4817626	0	+	0.36	(0.35,0.378]	chr11	448907	289	INTRON	INTRON	PPP6R3	ENSG00000110075.15	ENST00000530427.5:ENST00000528635.5:ENST00000529907.5:ENST00000533127.5:ENST00000534534.5:ENST00000529344.5:ENST00000524845.5:ENST00000393800.7:ENST00000265637.8:ENST00000524904.5:ENST00000393801.7:ENST00000265636.9:ENST00000529710.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	30	2	4.08816	4.41838	4.7486	0.046021	0.00418965	0.149888	0.0591344
chr13	25340134	25340233	5457583	0	+	0.373737	(0.35,0.378]	chr13	522982	1	UTR3	UTR3:EXON_MRNA:INTRON	NUP58	ENSG00000139496.17	ENST00000481980.2:ENST00000490231.6:ENST00000695571.1:ENST00000477876.2:ENST00000695572.1:ENST00000695573.1:ENST00000381736.8:ENST00000381718.8:ENST00000695575.1:ENST00000695574.1:ENST00000695576.1:ENST00000695577.1:ENST00000476553.2:ENST00000695578.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	30	2	4.08816	4.41838	4.7486	0.046021	0.00418965	0.149888	0.0591344
chr15	72527528	72527628	6059694	0	+	0.36	(0.35,0.378]	chr15	576864	90	INTRON	INTRON	ARIH1	ENSG00000166233.15	ENST00000379887.9:ENST00000570085.5:ENST00000564062.1:ENST00000567762.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	30	2	4.08816	4.41838	4.7486	0.046021	0.00418965	0.149888	0.0591344
chr4	99043887	99043985	2003204	0	+	0.377551	(0.35,0.378]	chr4	199865	1	INTRON	INTRON	METAP1	ENSG00000164024.12	ENST00000296411.11:ENST00000513097.1:ENST00000510133.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	30	2	4.08816	4.41838	4.7486	0.046021	0.00418965	0.149888	0.0591344
chr5	75456864	75456964	2643374	0	-	0.36	(0.35,0.378]	chr5	251313	300	INTRON	INTRON	CERT1	ENSG00000113163.19	ENST00000644912.1:ENST00000644072.2:ENST00000644445.1:ENST00000261415.12:ENST00000642809.1:ENST00000647512.2:ENST00000380494.10:ENST00000642556.1:ENST00000646713.1:ENST00000644516.1:ENST00000645866.1:ENST00000645483.1:ENST00000642225.1:ENST00000405807.10:ENST00000643780.2:ENST00000646511.1:ENST00000643158.1:ENST00000644377.1:ENST00000646302.1:ENST00000643773.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	30	2	4.08816	4.41838	4.7486	0.046021	0.00418965	0.149888	0.0591344
chr1	35878741	35878840	70592	0	+	0.262626	[0,0.28]	chr1	9024	85	INTRON	INTRON	AGO1	ENSG00000092847.13	ENST00000373206.5	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.20106	4.418145	4.63523	0.0695895	0.0139836	0.184298	0.10247
chr14	67930835	67930935	5766484	0	+	0.26	[0,0.28]	chr14	547062	216	INTRON	INTRON	RAD51B	ENSG00000182185.19	ENST00000487861.5:ENST00000471583.6:ENST00000479335.5:ENST00000487270.5:ENST00000488612.5:ENST00000553595.5:ENST00000497460.5:ENST00000492236.5:ENST00000554244.5:ENST00000478014.5:ENST00000469165.6:ENST00000460526.5:ENST00000468382.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	32	2	4.20106	4.418145	4.63523	0.0695895	0.0139836	0.184298	0.10247
chr15	58997802	58997902	6038983	0	+	0.24	[0,0.28]	chr15	574972	90	INTRON	INTRON	RNF111	ENSG00000157450.16	ENST00000559757.1:ENST00000348370.9:ENST00000559160.1:ENST00000559209.5:ENST00000557998.5	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.20106	4.418145	4.63523	0.0695895	0.0139836	0.184298	0.10247
chr18	2673463	2673514	6865040	0	+	0.235294	[0,0.28]	chr18	679957	1	SS5_PROX	SS5_PROX:INTRON	SMCHD1	ENSG00000101596.17	ENST00000320876.11:ENST00000688342.1:ENST00000684915.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	32	2	4.20106	4.418145	4.63523	0.0695895	0.0139836	0.184298	0.10247
chr3	15774671	15774770	1623587	0	-	0.272727	[0,0.28]	chr3	168009	80	INTRON	INTRON	ANKRD28	ENSG00000206560.12	ENST00000399451.6:ENST00000624145.3:ENST00000683139.1:ENST00000412318.5:ENST00000497037.5:ENST00000451422.1:ENST00000498524.5:ENST00000439830.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	32	2	4.20106	4.418145	4.63523	0.0695895	0.0139836	0.184298	0.10247
chr3	191428201	191428301	1590209	0	+	0.17	[0,0.28]	chr3	164637	22	INTRON	INTRON	ENSG00000223812	ENSG00000223812.8	ENST00000657540.1:ENST00000439804.6:ENST00000663647.1:ENST00000668751.1:ENST00000666632.1:ENST00000664732.1:ENST00000662007.1:ENST00000641158.1:ENST00000664994.1:ENST00000669884.1:ENST00000642133.1:ENST00000656380.1:ENST00000641055.1:ENST00000662578.1:ENST00000661668.1:ENST00000658347.1:ENST00000661029.1:ENST00000651548.2:ENST00000669360.1:ENST00000653490.1:ENST00000656942.1:ENST00000666456.1:ENST00000668276.1:ENST00000671595.1:ENST00000660290.1	lncRNA	lncRNA	lncRNA	lncRNA	0	32	2	4.20106	4.418145	4.63523	0.0695895	0.0139836	0.184298	0.10247
chr5	32410597	32410696	2598983	0	-	0.252525	[0,0.28]	chr5	246947	32	INTRON	INTRON	ZFR	ENSG00000056097.16	ENST00000265069.13:ENST00000505366.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	32	2	4.20106	4.418145	4.63523	0.0695895	0.0139836	0.184298	0.10247
chr7	149015442	149015542	3670916	0	-	0.28	[0,0.28]	chr7	340681	4	SS3_PROX	SS3_PROX:INTRON	PDIA4	ENSG00000155660.11	ENST00000652332.1:ENST00000286091.9	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.20106	4.418145	4.63523	0.0695895	0.0139836	0.184298	0.10247
chr8	6731509	6731601	3695235	0	+	0.228261	[0,0.28]	chr8	342841	3	INTRON	INTRON	AGPAT5	ENSG00000155189.12	ENST00000285518.11:ENST00000523234.5:ENST00000518327.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	32	2	4.20106	4.418145	4.63523	0.0695895	0.0139836	0.184298	0.10247
chr9	91343333	91343433	4281038	0	-	0.26	[0,0.28]	chr9	393806	1	SS3_PROX	SS3_PROX:INTRON	AUH	ENSG00000148090.12	ENST00000303617.5:ENST00000375731.9:ENST00000478465.5:ENST00000475023.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	32	2	4.20106	4.418145	4.63523	0.0695895	0.0139836	0.184298	0.10247
chr7	64918692	64918792	3321245	0	+	0.35	(0.32,0.35]	chr7	308795	4	SS5_PROX	SS5_PROX:INTRON	ZNF273	ENSG00000198039.12	ENST00000527278.5:ENST00000489672.5:ENST00000476120.2:ENST00000395375.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	66	2	3.65187	4.41801	5.18415	0.00333629	5.49434e-4	0.0512081	0.0213049
chr1	27666221	27666300	407489	0	-	0.392405	(0.378,0.408]	chr1	49038	3	UTR3	UTR3:EXON_MRNA	IFI6	ENSG00000126709.16	ENST00000361157.11:ENST00000339145.8:ENST00000679644.1:ENST00000362020.4	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	4.31699	4.417764999999999	4.51854	0.0250408	0.00748824	0.12011	0.0772645
chr1	113728465	113728564	525113	0	-	0.383838	(0.378,0.408]	chr1	61795	15	INTRON	INTRON	PHTF1	ENSG00000116793.16	ENST00000369604.6:ENST00000393357.6:ENST00000369600.5:ENST00000369598.5:ENST00000357783.6:ENST00000472612.5:ENST00000486855.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	29	2	4.31699	4.417764999999999	4.51854	0.0250408	0.00748824	0.12011	0.0772645
chr10	25017189	25017289	4408113	0	+	0.39	(0.378,0.408]	chr10	406807	4	SS5_PROX	SS5_PROX:INTRON	THNSL1	ENSG00000185875.13	ENST00000376356.5:ENST00000524413.5	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	4.31699	4.417764999999999	4.51854	0.0250408	0.00748824	0.12011	0.0772645
chr13	32592089	32592189	5465364	0	+	0.39	(0.378,0.408]	chr13	523717	51	INTRON	INTRON	PDS5B	ENSG00000083642.19	ENST00000315596.15:ENST00000482955.5:ENST00000498550.5:ENST00000450460.5:ENST00000493653.1:ENST00000466078.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	29	2	4.31699	4.417764999999999	4.51854	0.0250408	0.00748824	0.12011	0.0772645
chr14	31024904	31025004	5857859	0	-	0.4	(0.378,0.408]	chr14	556512	98	INTRON	INTRON	STRN3	ENSG00000196792.12	ENST00000355683.9:ENST00000357479.10:ENST00000555358.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	29	2	4.31699	4.417764999999999	4.51854	0.0250408	0.00748824	0.12011	0.0772645
chr16	69579139	69579239	6380141	0	+	0.4	(0.378,0.408]	chr16	613167	102	INTRON	INTRON	NFAT5	ENSG00000102908.22	ENST00000426654.6:ENST00000349945.7:ENST00000354436.6:ENST00000627621.3:ENST00000650987.1:ENST00000567990.5:ENST00000567239.5:ENST00000393742.7:ENST00000565301.2:ENST00000566899.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	29	2	4.31699	4.417764999999999	4.51854	0.0250408	0.00748824	0.12011	0.0772645
chr17	36564166	36564266	6602051	0	+	0.38	(0.378,0.408]	chr17	642565	29	INTRON	INTRON	GGNBP2	ENSG00000278311.5	ENST00000613102.5:ENST00000617860.4:ENST00000618837.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	29	2	4.31699	4.417764999999999	4.51854	0.0250408	0.00748824	0.12011	0.0772645
chr4	169555521	169555620	2296571	0	-	0.393939	(0.378,0.408]	chr4	222193	16	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	NEK1	ENSG00000137601.18	ENST00000687054.1:ENST00000507142.6:ENST00000686697.1:ENST00000688934.1:ENST00000685111.1:ENST00000687528.1:ENST00000687643.1:ENST00000685677.1:ENST00000439128.6:ENST00000511633.5:ENST00000510533.5:ENST00000512193.5:ENST00000693604.1:ENST00000692450.1:ENST00000687219.1:ENST00000693085.1:ENST00000509912.5:ENST00000690631.1:ENST00000688487.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	29	2	4.31699	4.417764999999999	4.51854	0.0250408	0.00748824	0.12011	0.0772645
chr8	41608815	41608915	3742533	0	+	0.39	(0.378,0.408]	chr8	347932	92	INTRON	INTRON	GPAT4	ENSG00000158669.11	ENST00000396987.7:ENST00000519853.5:ENST00000521806.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	29	2	4.31699	4.417764999999999	4.51854	0.0250408	0.00748824	0.12011	0.0772645
chr8	70607327	70607417	3967194	0	-	0.4	(0.378,0.408]	chr8	363968	6	UTR5	UTR5:EXON_MRNA:INTRON	TRAM1	ENSG00000067167.8	ENST00000262213.7:ENST00000521425.5:ENST00000521049.5:ENST00000520700.1:ENST00000518678.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	29	2	4.31699	4.417764999999999	4.51854	0.0250408	0.00748824	0.12011	0.0772645
chr8	105657114	105657214	3840636	0	+	0.4	(0.378,0.408]	chr8	354080	224	INTRON	INTRON	ZFPM2	ENSG00000169946.14	ENST00000407775.7:ENST00000520492.5:ENST00000511341.6:ENST00000517361.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	29	2	4.31699	4.417764999999999	4.51854	0.0250408	0.00748824	0.12011	0.0772645
chr12	56638923	56639005	5335734	0	-	0.231707	[0,0.28]	chr12	510110	1	SS5_PROX	SS5_PROX:INTRON	ATP5F1B	ENSG00000110955.9	ENST00000262030.8:ENST00000548474.2:ENST00000551182.1:ENST00000547808.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	32	2	4.28915	4.417625	4.5461	0.0365918	0.0319595	0.14477	0.138959
chr13	32510191	32510291	5572559	0	-	0.26	[0,0.28]	chr13	532548	9	INTRON	INTRON	N4BP2L2	ENSG00000244754.9	ENST00000357505.10:ENST00000399396.7:ENST00000504114.5:ENST00000509076.1:ENST00000446957.6:ENST00000674456.1:ENST00000674161.1:ENST00000674422.1:ENST00000674272.1:ENST00000674452.1:ENST00000674384.1:ENST00000505213.5:ENST00000473025.1:ENST00000674219.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	32	2	4.28915	4.417625	4.5461	0.0365918	0.0319595	0.14477	0.138959
chr15	82420375	82420475	6076199	0	+	0.25	[0,0.28]	chr15	578790	3	SS5_PROX	SS5_PROX:INTRON	ENSG00000278202	ENSG00000278202.1	ENST00000613086.1	lncRNA	lncRNA	lncRNA	lncRNA	0	32	2	4.28915	4.417625	4.5461	0.0365918	0.0319595	0.14477	0.138959
chr17	31286024	31286124	6593102	0	+	0.24	[0,0.28]	chr17	641260	203	INTRON	INTRON	NF1	ENSG00000196712.20	ENST00000696138.1:ENST00000356175.7:ENST00000691014.1:ENST00000358273.9:ENST00000579081.5:ENST00000456735.6:ENST00000493220.5:ENST00000687863.1:ENST00000696140.1:ENST00000696141.1:ENST00000581113.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	32	2	4.28915	4.417625	4.5461	0.0365918	0.0319595	0.14477	0.138959
chr3	99824841	99824941	1461970	0	+	0.24	[0,0.28]	chr3	153488	64	INTRON	INTRON	CMSS1	ENSG00000184220.12	ENST00000463526.1:ENST00000421999.8:ENST00000491299.5:ENST00000496116.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	32	2	4.28915	4.417625	4.5461	0.0365918	0.0319595	0.14477	0.138959
chr5	78164718	78164816	2649835	0	-	0.244898	[0,0.28]	chr5	251722	14	INTRON	INTRON	AP3B1	ENSG00000132842.15	ENST00000519295.6:ENST00000255194.11:ENST00000695515.1:ENST00000695454.1:ENST00000695511.1:ENST00000695453.1:ENST00000695455.1:ENST00000695513.1:ENST00000695488.1:ENST00000695450.1:ENST00000695507.1:ENST00000695512.1:ENST00000695510.1:ENST00000695451.1:ENST00000695447.1:ENST00000695505.1:ENST00000519888.6:ENST00000695514.1:ENST00000517940.2:ENST00000517561.2:ENST00000695452.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	32	2	4.28915	4.417625	4.5461	0.0365918	0.0319595	0.14477	0.138959
chr5	149517002	149517099	2750730	0	-	0.226804	[0,0.28]	chr5	259049	9	INTRON	INTRON	CSNK1A1	ENSG00000113712.19	ENST00000261798.10:ENST00000377843.8:ENST00000657001.1:ENST00000515768.6:ENST00000606719.6:ENST00000657462.1:ENST00000661952.1:ENST00000504676.5:ENST00000515435.5:ENST00000662268.1:ENST00000657706.1:ENST00000606299.2:ENST00000670598.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	32	2	4.28915	4.417625	4.5461	0.0365918	0.0319595	0.14477	0.138959
chr6	4900161	4900261	2792102	0	+	0.26	[0,0.28]	chr6	263614	74	INTRON	INTRON	CDYL	ENSG00000153046.18	ENST00000328908.9:ENST00000440139.5:ENST00000397588.8:ENST00000472453.5:ENST00000449732.6:ENST00000343762.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	32	2	4.28915	4.417625	4.5461	0.0365918	0.0319595	0.14477	0.138959
chr6	154818078	154818178	3002676	0	+	0.27	[0,0.28]	chr6	280808	2	SS3_PROX	SS3_PROX:INTRON	SCAF8	ENSG00000213079.10	ENST00000367186.7:ENST00000417268.3:ENST00000367178.8	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.28915	4.417625	4.5461	0.0365918	0.0319595	0.14477	0.138959
chr1	28395613	28395713	56092	0	+	0.39	(0.378,0.408]	chr1	7266	254	INTRON	INTRON	PHACTR4	ENSG00000204138.13	ENST00000633371.1:ENST00000632202.1:ENST00000632421.1:ENST00000463428.5:ENST00000373839.8:ENST00000493669.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	29	2	4.41169	4.417590000000001	4.42349	0.0199606	0.00992961	0.109608	0.0877296
chr1	40395900	40396000	81666	0	+	0.4	(0.378,0.408]	chr1	10558	20	INTRON	INTRON	SMAP2	ENSG00000084070.12	ENST00000435168.6:ENST00000372718.8:ENST00000372708.5:ENST00000614549.4	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	4.41169	4.417590000000001	4.42349	0.0199606	0.00992961	0.109608	0.0877296
chr1	206253730	206253830	298364	0	+	0.39	(0.378,0.408]	chr1	34349	385	INTRON	INTRON	SRGAP2	ENSG00000266028.8	ENST00000573034.8:ENST00000419187.6:ENST00000605610.5:ENST00000624873.3:ENST00000605242.5:ENST00000572793.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	29	2	4.41169	4.417590000000001	4.42349	0.0199606	0.00992961	0.109608	0.0877296
chr10	24658888	24658988	4581294	0	-	0.38	(0.378,0.408]	chr10	422181	234	INTRON	INTRON	ARHGAP21	ENSG00000107863.20	ENST00000612832.4:ENST00000396432.7:ENST00000680286.1:ENST00000376410.7:ENST00000446003.5:ENST00000476499.1:ENST00000416305.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	29	2	4.41169	4.417590000000001	4.42349	0.0199606	0.00992961	0.109608	0.0877296
chr15	25434268	25434367	6121795	0	-	0.40404	(0.378,0.408]	chr15	582937	68	INTRON	INTRON	UBE3A	ENSG00000114062.22	ENST00000648336.2:ENST00000438097.6:ENST00000635914.1:ENST00000638155.1:ENST00000637886.1:ENST00000638011.1:ENST00000649550.1:ENST00000650110.1:ENST00000630424.2:ENST00000566215.5:ENST00000428984.6:ENST00000675177.1:ENST00000675593.1:ENST00000625778.3:ENST00000675000.1:ENST00000626793.2:ENST00000628733.2:ENST00000630907.2:ENST00000675038.1:ENST00000629886.2:ENST00000628267.2:ENST00000629252.2:ENST00000625681.2:ENST00000627018.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	29	2	4.41169	4.417590000000001	4.42349	0.0199606	0.00992961	0.109608	0.0877296
chr16	2823988	2824087	6280122	0	+	0.40404	(0.378,0.408]	chr16	600857	24	INTRON	INTRON	PRSS21	ENSG00000007038.11	ENST00000575739.1	protein_coding	processed_transcript	protein_coding	processed_transcript	0	29	2	4.41169	4.417590000000001	4.42349	0.0199606	0.00992961	0.109608	0.0877296
chr16	67235534	67235628	6503652	0	-	0.382979	(0.378,0.408]	chr16	629363	7	INTRON	INTRON	FHOD1	ENSG00000135723.14	ENST00000258201.9:ENST00000567752.5:ENST00000561922.1:ENST00000568595.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	29	2	4.41169	4.417590000000001	4.42349	0.0199606	0.00992961	0.109608	0.0877296
chr18	46120560	46120653	6898984	0	+	0.387097	(0.378,0.408]	chr18	683563	1	INTRON	INTRON	HAUS1	ENSG00000152240.13	ENST00000282058.11:ENST00000586060.5:ENST00000591715.5:ENST00000592206.5:ENST00000585518.5:ENST00000589554.5:ENST00000593165.5:ENST00000588704.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	29	2	4.41169	4.417590000000001	4.42349	0.0199606	0.00992961	0.109608	0.0877296
chr6	36443723	36443799	2853920	0	+	0.381579	(0.378,0.408]	chr6	269699	1	SS5_PROX	SS5_PROX:INTRON	KCTD20	ENSG00000112078.14	ENST00000536244.5:ENST00000373731.7:ENST00000483557.5:ENST00000474988.5:ENST00000498267.5:ENST00000481911.5:ENST00000449081.6:ENST00000265344.8:ENST00000460983.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	29	2	4.41169	4.417590000000001	4.42349	0.0199606	0.00992961	0.109608	0.0877296
chr6	169692082	169692181	3267029	0	-	0.393939	(0.378,0.408]	chr6	303253	24	INTRON	INTRON	WDR27	ENSG00000184465.16	ENST00000448612.6:ENST00000648472.1:ENST00000423258.5:ENST00000647790.1:ENST00000647873.1:ENST00000649303.1:ENST00000647889.1:ENST00000648017.1:ENST00000650296.1:ENST00000546953.1:ENST00000649806.1:ENST00000474018.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	29	2	4.41169	4.417590000000001	4.42349	0.0199606	0.00992961	0.109608	0.0877296
chr1	161345432	161345531	234852	0	+	0.343434	(0.32,0.35]	chr1	28289	44	INTRON	INTRON	SDHC	ENSG00000143252.16	ENST00000367975.7:ENST00000342751.8:ENST00000432287.6:ENST00000513009.5:ENST00000392169.6:ENST00000504963.5:ENST00000470743.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	30	2	4.36755	4.417565	4.46758	0.0300552	0.0119306	0.129138	0.0962115
chr2	168822947	168823045	905732	0	+	0.326531	(0.32,0.35]	chr2	99861	43	INTRON	INTRON	NOSTRIN	ENSG00000163072.16	ENST00000458381.6:ENST00000444448.6:ENST00000439509.5:ENST00000445023.6:ENST00000397206.6:ENST00000317647.12:ENST00000397209.6:ENST00000447264.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	30	2	4.36755	4.417565	4.46758	0.0300552	0.0119306	0.129138	0.0962115
chr20	32148244	32148342	7254705	0	+	0.326531	(0.32,0.35]	chr20	736890	10	INTRON	INTRON	TM9SF4	ENSG00000101337.16	ENST00000398022.7:ENST00000217315.9	protein_coding	protein_coding	protein_coding	protein_coding	0	30	2	4.36755	4.417565	4.46758	0.0300552	0.0119306	0.129138	0.0962115
chr20	32360111	32360206	7255834	0	+	0.336842	(0.32,0.35]	chr20	737040	2	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	ASXL1	ENSG00000171456.21	ENST00000651418.1:ENST00000375687.10:ENST00000613218.4:ENST00000646367.1:ENST00000644587.1:ENST00000620121.4:ENST00000645337.1:ENST00000649901.1:ENST00000646985.1:ENST00000645035.1:ENST00000497249.6:ENST00000643168.1:ENST00000375689.5:ENST00000306058.9:ENST00000555343.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	30	2	4.36755	4.417565	4.46758	0.0300552	0.0119306	0.129138	0.0962115
chr5	7876267	7876365	2316753	0	+	0.346939	(0.32,0.35]	chr5	224416	5	INTRON	INTRON	MTRR	ENSG00000124275.15	ENST00000502509.5:ENST00000264668.6:ENST00000513439.5:ENST00000511461.5:ENST00000440940.7:ENST00000514220.5:ENST00000510279.5:ENST00000508047.5:ENST00000503550.5:ENST00000514369.5:ENST00000502550.5:ENST00000510525.5:ENST00000508890.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	30	2	4.36755	4.417565	4.46758	0.0300552	0.0119306	0.129138	0.0962115
chr7	7970505	7970605	3279005	0	+	0.33	(0.32,0.35]	chr7	304747	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	GLCCI1	ENSG00000106415.13	ENST00000223145.10:ENST00000430798.1:ENST00000414914.5:ENST00000492797.5:ENST00000460897.1:ENST00000470583.5:ENST00000474269.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	30	2	4.36755	4.417565	4.46758	0.0300552	0.0119306	0.129138	0.0962115
chr7	133755300	133755400	3423204	0	+	0.34	(0.32,0.35]	chr7	319395	1248	INTRON	INTRON	EXOC4	ENSG00000131558.15	ENST00000253861.5:ENST00000479839.6:ENST00000483800.5:ENST00000469115.5:ENST00000489931.5:ENST00000482089.5:ENST00000460346.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	30	2	4.36755	4.417565	4.46758	0.0300552	0.0119306	0.129138	0.0962115
chr8	28910560	28910660	3725057	0	+	0.33	(0.32,0.35]	chr8	346251	184	INTRON	INTRON	HMBOX1	ENSG00000147421.18	ENST00000287701.15:ENST00000558662.5:ENST00000519662.5:ENST00000397358.7:ENST00000560599.5:ENST00000523613.5:ENST00000560357.5:ENST00000521516.5:ENST00000519047.5:ENST00000560269.1:ENST00000355231.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	30	2	4.36755	4.417565	4.46758	0.0300552	0.0119306	0.129138	0.0962115
chr9	112135025	112135125	4316374	0	-	0.35	(0.32,0.35]	chr9	396964	102	INTRON	INTRON	SUSD1	ENSG00000106868.17	ENST00000374270.8:ENST00000374263.7:ENST00000355396.7:ENST00000374264.6:ENST00000415074.1:ENST00000532348.1:ENST00000482851.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	30	2	4.36755	4.417565	4.46758	0.0300552	0.0119306	0.129138	0.0962115
chr12	111530808	111530908	5412541	0	-	0.5	(0.476,0.515]	chr12	516916	51	INTRON	INTRON	ATXN2	ENSG00000204842.18	ENST00000642389.2:ENST00000608853.5:ENST00000672613.1:ENST00000673436.1:ENST00000643669.2:ENST00000616825.4:ENST00000389153.10:ENST00000550104.5:ENST00000483311.6:ENST00000672335.1:ENST00000492467.6:ENST00000673557.1:ENST00000673283.1:ENST00000673449.1:ENST00000535949.5:ENST00000542287.6:ENST00000644883.1:ENST00000647305.1:ENST00000671792.1:ENST00000392645.6:ENST00000672105.1:ENST00000471866.5:ENST00000549455.1:ENST00000548492.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	29	2	4.13586	4.41752	4.69918	0.031846	0.00400966	0.13151	0.057767
chr14	74886724	74886822	5789822	0	+	0.489796	(0.476,0.515]	chr14	548563	7	INTRON	INTRON	DLST	ENSG00000119689.15	ENST00000556460.5:ENST00000555492.5:ENST00000557012.5:ENST00000554612.5:ENST00000334220.9:ENST00000238671.11:ENST00000556582.5:ENST00000555071.5:ENST00000555190.5:ENST00000555459.5:ENST00000555089.5:ENST00000626051.1:ENST00000554806.5:ENST00000555988.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	29	2	4.13586	4.41752	4.69918	0.031846	0.00400966	0.13151	0.057767
chr2	238024445	238024544	1051128	0	+	0.50505	(0.476,0.515]	chr2	111758	75	INTRON	INTRON	UBE2F	ENSG00000184182.19	ENST00000440223.5:ENST00000441728.6:ENST00000414443.5:ENST00000272930.9:ENST00000409633.5:ENST00000416292.5:ENST00000448502.5:ENST00000455999.5:ENST00000417231.5:ENST00000445676.5:ENST00000439338.5:ENST00000439780.5:ENST00000454786.5:ENST00000433241.5:ENST00000409953.5:ENST00000409332.5:ENST00000612130.4:ENST00000434655.5:ENST00000434137.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	29	2	4.13586	4.41752	4.69918	0.031846	0.00400966	0.13151	0.057767
chr3	57789830	57789930	1435971	0	+	0.5	(0.476,0.515]	chr3	151661	316	INTRON	INTRON	SLMAP	ENSG00000163681.16	ENST00000295951.7:ENST00000659926.1:ENST00000659705.1:ENST00000671191.1:ENST00000667800.1:ENST00000655012.1:ENST00000428312.6:ENST00000664084.1:ENST00000657480.1:ENST00000467901.1:ENST00000295952.7:ENST00000383718.7:ENST00000449503.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	29	2	4.13586	4.41752	4.69918	0.031846	0.00400966	0.13151	0.057767
chr7	5217278	5217370	3272240	0	+	0.48913	(0.476,0.515]	chr7	304124	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	WIPI2	ENSG00000157954.15	ENST00000401525.7:ENST00000288828.9:ENST00000404704.7:ENST00000466014.5:ENST00000382384.6:ENST00000496867.5:ENST00000475309.5:ENST00000484262.1:ENST00000465102.5:ENST00000480238.5:ENST00000488359.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	29	2	4.13586	4.41752	4.69918	0.031846	0.00400966	0.13151	0.057767
chrX	156023460	156023554	7741462	0	+	0.510638	(0.476,0.515]	chrX	792678	1	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	WASH6P	ENSG00000182484.15	ENST00000359512.8:ENST00000461007.6:ENST00000460206.6:ENST00000340131.12:ENST00000492963.6:ENST00000484415.6:ENST00000483079.6:ENST00000496301.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	29	2	4.13586	4.41752	4.69918	0.031846	0.00400966	0.13151	0.057767
chr1	51646494	51646594	99686	0	+	0.39	(0.378,0.408]	chr1	13244	289	INTRON	INTRON	OSBPL9	ENSG00000117859.19	ENST00000371714.5:ENST00000428468.6:ENST00000447887.5:ENST00000495776.5:ENST00000435274.6:ENST00000453295.5:ENST00000489990.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	30	2	3.98867	4.41747	4.84627	0.0507	0.00254319	0.156383	0.0465056
chr11	9299642	9299701	4909286	0	-	0.40678	(0.378,0.408]	chr11	460159	2	CDS	CDS:EXON_MRNA	TMEM41B	ENSG00000166471.11	ENST00000524543.5:ENST00000528080.6:ENST00000299596.8:ENST00000611268.4:ENST00000527813.5:ENST00000533723.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	30	2	3.98867	4.41747	4.84627	0.0507	0.00254319	0.156383	0.0465056
chr18	58345868	58345967	6918253	0	+	0.40404	(0.378,0.408]	chr18	684595	24	INTRON	INTRON	NEDD4L	ENSG00000049759.20	ENST00000400345.8:ENST00000356462.10:ENST00000674845.1:ENST00000589054.5:ENST00000676024.1:ENST00000382850.8:ENST00000256830.13:ENST00000676223.1:ENST00000675147.1:ENST00000675801.1:ENST00000456986.5:ENST00000675502.1:ENST00000357895.9:ENST00000435432.6:ENST00000586263.5:ENST00000456173.6:ENST00000676226.1:ENST00000675865.1:ENST00000675221.1:ENST00000431212.6:ENST00000674636.1:ENST00000674856.1:ENST00000675434.1:ENST00000635997.1:ENST00000674517.1:ENST00000587881.1:ENST00000590638.5:ENST00000679791.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	30	2	3.98867	4.41747	4.84627	0.0507	0.00254319	0.156383	0.0465056
chr3	64017732	64017823	1724026	0	-	0.384615	(0.378,0.408]	chr3	176304	1	INTRON	INTRON	PSMD6	ENSG00000163636.11	ENST00000394431.6:ENST00000295901.9:ENST00000480205.5:ENST00000492933.5:ENST00000476464.5:ENST00000482510.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	30	2	3.98867	4.41747	4.84627	0.0507	0.00254319	0.156383	0.0465056
chr10	87889029	87889128	4483186	0	+	0.363636	(0.35,0.378]	chr10	412564	82	INTRON	INTRON	PTEN	ENSG00000171862.12	ENST00000688308.1:ENST00000693560.1:ENST00000371953.8:ENST00000688158.1:ENST00000686459.1:ENST00000462694.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	30	2	4.19022	4.417395	4.64457	0.0209891	0.012652	0.122348	0.0926667
chr22	17656332	17656431	7475197	0	+	0.353535	(0.35,0.378]	chr22	762160	1	INTRON	INTRON	BCL2L13	ENSG00000099968.18	ENST00000399781.5:ENST00000399782.5:ENST00000337612.9:ENST00000418951.6:ENST00000538149.5:ENST00000543133.5:ENST00000611738.4:ENST00000616863.4:ENST00000618481.4:ENST00000498133.5:ENST00000317582.10:ENST00000464649.1:ENST00000493680.5:ENST00000355028.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	30	2	4.19022	4.417395	4.64457	0.0209891	0.012652	0.122348	0.0926667
chr5	34953132	34953230	2337605	0	+	0.357143	(0.35,0.378]	chr5	225787	5	INTRON	INTRON	DNAJC21	ENSG00000168724.17	ENST00000648817.1:ENST00000382021.2:ENST00000642851.1:ENST00000642675.1:ENST00000642285.1:ENST00000646714.1:ENST00000506762.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	30	2	4.19022	4.417395	4.64457	0.0209891	0.012652	0.122348	0.0926667
chr8	48027766	48027866	3752430	0	+	0.36	(0.35,0.378]	chr8	349044	188	INTRON	INTRON	UBE2V2	ENSG00000169139.12	ENST00000523432.5:ENST00000521346.5:ENST00000523111.7:ENST00000518360.5:ENST00000517630.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	30	2	4.19022	4.417395	4.64457	0.0209891	0.012652	0.122348	0.0926667
chr16	8959776	8959876	6442717	0	-	0.46	(0.44,0.476]	chr16	620597	35	INTRON	INTRON	USP7	ENSG00000187555.16	ENST00000673704.1:ENST00000344836.9:ENST00000563961.5:ENST00000569230.5:ENST00000566273.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	60	2	3.25801	4.41728	5.57655	0.00248185	3.3967e-4	0.0460771	0.0170719
chr1	244435149	244435247	672674	0	-	0.265306	[0,0.28]	chr1	79568	22	INTRON	INTRON	ADSS2	ENSG00000035687.10	ENST00000366535.4	protein_coding	protein_coding	protein_coding	protein_coding	1	80	2	3.88891	4.417260000000001	4.94561	0.0150263	2.88288e-4	0.0994339	0.0150627
chr3	138764454	138764554	1830794	0	-	0.41	(0.408,0.44]	chr3	184051	47	INTRON	INTRON	PIK3CB	ENSG00000051382.9	ENST00000674063.1:ENST00000477593.5:ENST00000462898.5:ENST00000483968.5:ENST00000465581.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	64	2	3.20034	4.41714	5.63394	0.00398025	7.78928e-5	0.0549214	0.00735438
chr17	49040686	49040781	6625048	0	+	0.305263	(0.28,0.32]	chr17	646639	2	INTRON	INTRON	IGF2BP1	ENSG00000159217.10	ENST00000290341.8:ENST00000431824.2	protein_coding	protein_coding	protein_coding	protein_coding	1	69	2	3.1268	4.417095	5.70739	0.00508956	8.32651e-4	0.0646039	0.0266389
chr17	58859384	58859484	6638679	0	+	0.31	(0.28,0.32]	chr17	648239	235	INTRON	INTRON	PPM1E	ENSG00000175175.6	ENST00000308249.4	protein_coding	protein_coding	protein_coding	protein_coding	1	69	2	3.1268	4.417095	5.70739	0.00508956	8.32651e-4	0.0646039	0.0266389
chr5	181241233	181241325	2783893	0	-	0.521739	(0.515,0.57]	chr5	262931	4	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	RACK1	ENSG00000204628.12	ENST00000512805.6:ENST00000511473.5:ENST00000504325.5:ENST00000507756.5:ENST00000502905.5:ENST00000511566.5:ENST00000376817.8:ENST00000508682.5:ENST00000504128.5:ENST00000504726.1:ENST00000511900.5:ENST00000513060.5:ENST00000512968.5:ENST00000510199.5:ENST00000502844.5:ENST00000507000.5:ENST00000514183.5:ENST00000502548.5:ENST00000502890.5:ENST00000503494.5:ENST00000506312.3:ENST00000503081.1:ENST00000515417.5:ENST00000513027.3:ENST00000626067.1:ENST00000505461.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	120	2	4.03562	4.41708	4.79854	4.64806e-5	6.07609e-7	0.00555027	4.52668e-4
chr10	1106664	1106764	4379915	0	+	0.48	(0.476,0.515]	chr10	403983	10	INTRON	INTRON	WDR37	ENSG00000047056.17	ENST00000358220.5:ENST00000263150.9:ENST00000650072.1	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	4.21964	4.41683	4.61402	0.0167715	0.00947755	0.110511	0.0817766
chr13	20857653	20857752	5555892	0	-	0.515152	(0.476,0.515]	chr13	531012	15	INTRON	INTRON	XPO4	ENSG00000132953.18	ENST00000255305.11:ENST00000490513.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	29	2	4.21964	4.41683	4.61402	0.0167715	0.00947755	0.110511	0.0817766
chr22	35919353	35919453	7582904	0	-	0.5	(0.476,0.515]	chr22	775894	789	INTRON	INTRON	RBFOX2	ENSG00000100320.24	ENST00000438146.7:ENST00000695854.1:ENST00000359369.8:ENST00000695807.1:ENST00000408983.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	29	2	4.21964	4.41683	4.61402	0.0167715	0.00947755	0.110511	0.0817766
chr5	82227517	82227617	2405264	0	+	0.48	(0.476,0.515]	chr5	232146	486	INTRON	INTRON	ATG10	ENSG00000152348.16	ENST00000282185.8:ENST00000458350.7:ENST00000504770.5:ENST00000513634.1:ENST00000508814.5:ENST00000514253.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	29	2	4.21964	4.41683	4.61402	0.0167715	0.00947755	0.110511	0.0817766
chr5	137949781	137949879	2729951	0	-	0.489796	(0.476,0.515]	chr5	256915	2	INTRON	INTRON	FAM13B	ENSG00000031003.11	ENST00000689681.1:ENST00000033079.7:ENST00000425075.6:ENST00000420893.6	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	4.21964	4.41683	4.61402	0.0167715	0.00947755	0.110511	0.0817766
chr9	92410958	92411058	4155296	0	+	0.48	(0.476,0.515]	chr9	379002	307	INTRON	INTRON	CENPP	ENSG00000188312.14	ENST00000375587.8	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	4.21964	4.41683	4.61402	0.0167715	0.00947755	0.110511	0.0817766
chrX	101156140	101156240	7694734	0	+	0.48	(0.476,0.515]	chrX	787429	76	INTRON	INTRON	CENPI	ENSG00000102384.14	ENST00000684367.1:ENST00000423383.3:ENST00000682095.1:ENST00000372927.5	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	4.21964	4.41683	4.61402	0.0167715	0.00947755	0.110511	0.0817766
chr15	88911723	88911823	6256827	0	-	0.42	(0.408,0.44]	chr15	596901	2	SS5_PROX	SS5_PROX:INTRON	MFGE8	ENSG00000140545.16	ENST00000268150.13:ENST00000558018.5:ENST00000558029.6:ENST00000695566.1:ENST00000268151.11:ENST00000566497.5:ENST00000695774.1:ENST00000542878.5:ENST00000695567.1:ENST00000695568.1:ENST00000695569.1:ENST00000695570.1:ENST00000559997.5:ENST00000558352.5:ENST00000558773.1:ENST00000557944.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	86	2	2.82461	4.416824999999999	6.00904	0.00241819	1.03233e-5	0.0442901	0.00235018
chr7	87162738	87162797	3345726	0	+	0.338983	(0.32,0.35]	chr7	311632	1	SS3_PROX	SS3_PROX:INTRON	DMTF1	ENSG00000135164.19	ENST00000413276.6:ENST00000447863.5:ENST00000579677.5:ENST00000425406.5:ENST00000446796.6:ENST00000420131.5:ENST00000414630.6:ENST00000547146.6:ENST00000579850.5:ENST00000453049.5:ENST00000331242.12:ENST00000430405.7:ENST00000449088.7:ENST00000448598.5:ENST00000428819.5:ENST00000432937.6:ENST00000584619.5:ENST00000432366.6:ENST00000423590.6:ENST00000394703.9:ENST00000584457.5:ENST00000580710.5:ENST00000579592.5:ENST00000434534.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	67	2	3.75694	4.416615	5.07629	0.00468114	3.37248e-4	0.0600108	0.0163178
chr7	64693734	64693832	3320162	0	+	0.387755	(0.378,0.408]	chr7	308689	14	INTRON	INTRON	ZNF107	ENSG00000196247.13	ENST00000395391.2:ENST00000684016.1:ENST00000620827.6:ENST00000423627.6:ENST00000613690.5:ENST00000344930.7:ENST00000682671.1:ENST00000683971.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	61	2	3.27907	4.416475	5.55388	0.0023379	5.01023e-4	0.0442989	0.0206993
chr6	17702683	17702783	3066172	0	-	0.39	(0.378,0.408]	chr6	284872	137	INTRON	INTRON	NUP153	ENSG00000124789.12	ENST00000613258.4:ENST00000537253.5:ENST00000262077.3	protein_coding	protein_coding	protein_coding	protein_coding	2	135	2	4.24264	4.416309999999999	4.58998	4.14843e-5	2.28522e-6	0.00546267	9.46989e-4
chr12	57061345	57061445	5336668	0	-	0.39	(0.378,0.408]	chr12	510344	4	SS3_PROX	SS3_PROX:INTRON	NEMP1	ENSG00000166881.10	ENST00000300128.9:ENST00000379391.7:ENST00000554340.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	30	2	4.09379	4.4160900000000005	4.73839	0.023912	0.00837252	0.129075	0.0774402
chr7	140036816	140036916	3658987	0	-	0.4	(0.378,0.408]	chr7	339590	21	INTRON	INTRON	PARP12	ENSG00000059378.13	ENST00000263549.8:ENST00000473341.5:ENST00000488726.5:ENST00000489809.5:ENST00000491598.5:ENST00000470515.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	30	2	4.09379	4.4160900000000005	4.73839	0.023912	0.00837252	0.129075	0.0774402
chr1	202783292	202783392	620499	0	-	0.47	(0.44,0.476]	chr1	73670	58	INTRON	INTRON	KDM5B	ENSG00000117139.18	ENST00000367265.9:ENST00000648338.1:ENST00000649542.1:ENST00000647757.1:ENST00000367264.7:ENST00000648473.1:ENST00000650569.1:ENST00000648056.1:ENST00000649770.1:ENST00000648469.1:ENST00000650417.1:ENST00000235790.9:ENST00000648738.1:ENST00000648958.1:ENST00000602511.1:ENST00000650368.1:ENST00000649200.1:ENST00000648354.1:ENST00000650493.1:ENST00000470573.5:ENST00000467487.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	29	2	4.12843	4.41599	4.70355	0.0337192	0.00383786	0.134145	0.0562562
chr1	233652824	233652923	338931	0	+	0.444444	(0.44,0.476]	chr1	39440	24	INTRON	INTRON	KCNK1	ENSG00000135750.15	ENST00000366621.8:ENST00000472190.5:ENST00000366620.5:ENST00000487728.1:ENST00000446915.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	29	2	4.12843	4.41599	4.70355	0.0337192	0.00383786	0.134145	0.0562562
chr11	20406332	20406431	4751111	0	+	0.454545	(0.44,0.476]	chr11	440011	10	EXON_MRNA	EXON_MRNA:INTRON	PRMT3	ENSG00000185238.13	ENST00000330796.9:ENST00000331079.11:ENST00000437750.2:ENST00000529592.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	29	2	4.12843	4.41599	4.70355	0.0337192	0.00383786	0.134145	0.0562562
chr14	64844125	64844225	5910996	0	-	0.45	(0.44,0.476]	chr14	561513	206	INTRON	INTRON	SPTB	ENSG00000070182.21	ENST00000644917.1:ENST00000389720.4	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	4.12843	4.41599	4.70355	0.0337192	0.00383786	0.134145	0.0562562
chr2	170960087	170960185	916712	0	+	0.459184	(0.44,0.476]	chr2	100906	32	INTRON	INTRON	GORASP2	ENSG00000115806.13	ENST00000234160.5:ENST00000493692.5:ENST00000442798.5:ENST00000486498.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	29	2	4.12843	4.41599	4.70355	0.0337192	0.00383786	0.134145	0.0562562
chr4	119548302	119548399	2027301	0	+	0.463918	(0.44,0.476]	chr4	201646	2	EXON_MRNA	EXON_MRNA:INTRON	SEPTIN7P14	ENSG00000245958.7	ENST00000688315.1:ENST00000692945.1:ENST00000685974.1:ENST00000692409.1:ENST00000498873.5:ENST00000500559.6:ENST00000503038.1	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript	0	29	2	4.12843	4.41599	4.70355	0.0337192	0.00383786	0.134145	0.0562562
chr5	98911279	98911379	2683897	0	-	0.45	(0.44,0.476]	chr5	253957	58	INTRON	INTRON	CHD1	ENSG00000153922.11	ENST00000614616.5:ENST00000284049.7	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	4.12843	4.41599	4.70355	0.0337192	0.00383786	0.134145	0.0562562
chr17	13001286	13001383	6726308	0	-	0.494845	(0.476,0.515]	chr17	660059	5	INTRON	INTRON	ELAC2	ENSG00000006744.19	ENST00000338034.9:ENST00000484122.5:ENST00000480891.5:ENST00000395962.6:ENST00000487229.6:ENST00000426905.7:ENST00000584650.5:ENST00000492559.5:ENST00000446899.5:ENST00000578991.5:ENST00000476042.1:ENST00000578104.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	67	2	3.77334	4.415905	5.05847	0.00108081	3.52709e-4	0.0300133	0.0174637
chr16	1963454	1963552	6430559	0	-	0.561224	(0.515,0.57]	chr16	618456	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPS2	ENSG00000140988.16	ENST00000343262.9:ENST00000526522.5:ENST00000533161.5:ENST00000527871.5:ENST00000530225.5:ENST00000531065.5:ENST00000527109.5:ENST00000533872.5:ENST00000532746.5:ENST00000533186.5:ENST00000529806.5:ENST00000534461.5:ENST00000527302.1:ENST00000526908.1:ENST00000527826.1:ENST00000563194.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	96	2	2.17039	4.4158	6.66121	0.00900252	2.50168e-7	0.0851009	2.66331e-4
chr15	41305634	41305734	6004605	0	+	0.25	[0,0.28]	chr15	571273	77	EXON_LNCRNA	EXON_LNCRNA:INTRON	OIP5-AS1	ENSG00000247556.6	ENST00000500949.6:ENST00000501665.2	lncRNA	lncRNA	lncRNA	lncRNA	1	76	2	3.66971	4.415505	5.1613	0.00866441	7.51669e-4	0.0787025	0.0251578
chr2	201068869	201068968	1311871	0	-	0.323232	(0.32,0.35]	chr2	137315	71	INTRON	INTRON	FAM126B	ENSG00000155744.10	ENST00000681958.1:ENST00000418596.7:ENST00000286181.7:ENST00000498780.5:ENST00000452799.5:ENST00000453765.5:ENST00000446678.5:ENST00000474118.5:ENST00000485636.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	65	2	3.49869	4.4154350000000004	5.33218	0.00204346	0.00108004	0.04086	0.0300133
chr19	23741647	23741746	7163996	0	-	0.50505	(0.476,0.515]	chr19	724055	26	UTR3	UTR3:EXON_MRNA	ZNF681	ENSG00000196172.9	ENST00000402377.3	protein_coding	protein_coding	protein_coding	protein_coding	1	60	2	3.2463	4.415275	5.58425	0.00262374	2.97744e-4	0.0470772	0.0160246
chr8	67209984	67210083	3962446	0	-	0.484848	(0.476,0.515]	chr8	363563	29	INTRON	INTRON	ARFGEF1	ENSG00000066777.9	ENST00000520381.5:ENST00000518789.5:ENST00000262215.8:ENST00000518230.5	protein_coding	protein_coding	protein_coding	protein_coding	1	60	2	3.2463	4.415275	5.58425	0.00262374	2.97744e-4	0.0470772	0.0160246
chr11	18630117	18630216	4933802	0	-	0.464646	(0.44,0.476]	chr11	462117	128	INTRON	INTRON	SPTY2D1	ENSG00000179119.15	ENST00000336349.6:ENST00000536336.5:ENST00000543776.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	29	2	4.22393	4.4152000000000005	4.60647	0.0162322	0.0102339	0.109464	0.0850389
chr13	77239070	77239168	5624082	0	-	0.44898	(0.44,0.476]	chr13	536408	7	INTRON	INTRON	MYCBP2	ENSG00000005810.20	ENST00000683823.1:ENST00000684354.1:ENST00000682321.1:ENST00000695079.1:ENST00000683697.1:ENST00000357337.11:ENST00000544440.7:ENST00000695080.1:ENST00000695081.1:ENST00000695090.1:ENST00000695091.1:ENST00000695092.1:ENST00000695093.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	29	2	4.22393	4.4152000000000005	4.60647	0.0162322	0.0102339	0.109464	0.0850389
chr14	50261575	50261674	5888821	0	-	0.444444	(0.44,0.476]	chr14	559020	140	INTRON	INTRON	L2HGDH	ENSG00000087299.12	ENST00000261699.8:ENST00000267436.9:ENST00000421284.7	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	4.22393	4.4152000000000005	4.60647	0.0162322	0.0102339	0.109464	0.0850389
chr16	81038386	81038483	6404122	0	+	0.453608	(0.44,0.476]	chr16	614937	5	INTRON	INTRON	ATMIN	ENSG00000166454.10	ENST00000299575.5:ENST00000562969.1:ENST00000539819.5:ENST00000564241.5:ENST00000565237.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	29	2	4.22393	4.4152000000000005	4.60647	0.0162322	0.0102339	0.109464	0.0850389
chr16	84616292	84616389	6533767	0	-	0.474227	(0.44,0.476]	chr16	633091	4	UTR3	UTR3:EXON_MRNA:INTRON	COTL1	ENSG00000103187.8	ENST00000262428.5:ENST00000564057.1:ENST00000564662.1:ENST00000567786.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	29	2	4.22393	4.4152000000000005	4.60647	0.0162322	0.0102339	0.109464	0.0850389
chr17	58778044	58778144	6637865	0	+	0.46	(0.44,0.476]	chr17	648237	212	INTRON	INTRON	PPM1E	ENSG00000175175.6	ENST00000308249.4	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	4.22393	4.4152000000000005	4.60647	0.0162322	0.0102339	0.109464	0.0850389
chr19	4390905	4391004	7120032	0	-	0.474747	(0.44,0.476]	chr19	716287	4	INTRON	INTRON	SH3GL1	ENSG00000141985.9	ENST00000269886.7:ENST00000598564.5:ENST00000417295.6:ENST00000598219.1	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	4.22393	4.4152000000000005	4.60647	0.0162322	0.0102339	0.109464	0.0850389
chr4	108026042	108026139	2018181	0	+	0.474227	(0.44,0.476]	chr4	200666	2	EXON_MRNA	EXON_MRNA:INTRON	HADH	ENSG00000138796.18	ENST00000603302.5:ENST00000505878.4:ENST00000639335.1:ENST00000639146.1:ENST00000640752.2:ENST00000507260.3:ENST00000640201.2:ENST00000638621.1:ENST00000684696.1:ENST00000309522.8:ENST00000403312.6:ENST00000640060.1:ENST00000638559.1:ENST00000682373.1:ENST00000639698.1:ENST00000638648.2:ENST00000626637.2:ENST00000682067.1:ENST00000639784.1:ENST00000640048.1:ENST00000515462.7:ENST00000510728.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	29	2	4.22393	4.4152000000000005	4.60647	0.0162322	0.0102339	0.109464	0.0850389
chr4	39847369	39847468	2130861	0	-	0.474747	(0.44,0.476]	chr4	210084	16	EXON_MRNA	EXON_MRNA:INTRON	PDS5A	ENSG00000121892.15	ENST00000303538.13:ENST00000507766.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	62	2	3.02366	4.415065	5.80647	0.00603307	1.22335e-4	0.0700813	0.00993581
chr9	128121569	128121668	4357434	0	-	0.585859	(0.57,1]	chr9	400185	4	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	PTGES2	ENSG00000148334.16	ENST00000338961.11:ENST00000277462.9:ENST00000617202.4:ENST00000678916.1:ENST00000678174.1:ENST00000679345.1:ENST00000677980.1:ENST00000677651.1:ENST00000676562.1:ENST00000476655.6:ENST00000493205.6:ENST00000677691.1:ENST00000497109.6:ENST00000496594.5:ENST00000483625.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	40	2	3.69986	4.415035	5.13021	1.9698e-4	1.21664e-4	0.0122531	0.00992813
chr7	56038750	56038850	3536373	0	-	0.57	(0.515,0.57]	chr7	329831	42	INTRON	INTRON	PSPH	ENSG00000146733.14	ENST00000437355.6:ENST00000275605.8:ENST00000395471.7:ENST00000421312.5:ENST00000419984.6:ENST00000424596.1:ENST00000416592.1:ENST00000413218.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	59	2	3.7003	4.41502	5.12974	4.54392e-4	3.73715e-4	0.0192381	0.0179087
chr2	182942463	182942563	1285042	0	-	0.37	(0.35,0.378]	chr2	135306	3	SS3_PROX	SS3_PROX:INTRON	NCKAP1	ENSG00000061676.15	ENST00000361354.9:ENST00000360982.2:ENST00000478449.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	91	2	3.61985	4.415015	5.21018	0.00228003	3.53207e-5	0.0426265	0.00474674
chr19	2202299	2202399	6996563	0	+	0.63	(0.57,1]	chr19	693468	2	SS3_PROX	SS3_PROX:INTRON	DOT1L	ENSG00000104885.19	ENST00000398665.8:ENST00000686010.1	protein_coding	protein_coding	protein_coding	protein_coding	6	142	2	3.57624	4.41495	5.25366	7.78765e-8	1.65958e-9	1.21354e-4	7.53218e-6
chr1	100975757	100975857	175144	0	+	0.44	(0.408,0.44]	chr1	18985	10	UTR3	UTR3:EXON_MRNA	SLC30A7	ENSG00000162695.12	ENST00000370112.8:ENST00000357650.9	protein_coding	protein_coding	protein_coding	protein_coding	1	60	2	3.63785	4.414935	5.19202	0.0016671	4.70012e-4	0.0369207	0.0196294
chr16	47252254	47252353	6481601	0	-	0.333333	(0.32,0.35]	chr16	626969	139	INTRON	INTRON	ITFG1	ENSG00000129636.13	ENST00000568047.5:ENST00000320640.11:ENST00000537184.6:ENST00000542691.5:ENST00000544001.6:ENST00000565262.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	30	2	4.273	4.414804999999999	4.55661	0.0368357	0.00927858	0.138959	0.0855292
chr19	44494248	44494348	7189978	0	-	0.35	(0.32,0.35]	chr19	727858	87	INTRON	INTRON	ZNF180	ENSG00000167384.11	ENST00000221327.8:ENST00000592529.6:ENST00000391956.8:ENST00000590088.5:ENST00000592095.5:ENST00000586637.5:ENST00000591064.1:ENST00000587047.1:ENST00000585514.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	30	2	4.273	4.414804999999999	4.55661	0.0368357	0.00927858	0.138959	0.0855292
chr2	39081165	39081265	1101939	0	-	0.34	(0.32,0.35]	chr2	118302	126	INTRON	INTRON	SOS1	ENSG00000115904.15	ENST00000692089.1:ENST00000402219.8:ENST00000690876.1:ENST00000395038.6:ENST00000691229.1:ENST00000689668.1:ENST00000690679.1:ENST00000461545.2:ENST00000451331.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	30	2	4.273	4.414804999999999	4.55661	0.0368357	0.00927858	0.138959	0.0855292
chr3	197832317	197832417	1598137	0	+	0.34	(0.32,0.35]	chr3	165605	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	LRCH3	ENSG00000186001.14	ENST00000438796.6:ENST00000428136.2:ENST00000425562.7:ENST00000441090.6:ENST00000414675.6:ENST00000334859.8	protein_coding	protein_coding	protein_coding	protein_coding	0	30	2	4.273	4.414804999999999	4.55661	0.0368357	0.00927858	0.138959	0.0855292
chr5	173956533	173956632	2550442	0	+	0.343434	(0.32,0.35]	chr5	243486	5	UTR3	UTR3:EXON_MRNA	CPEB4	ENSG00000113742.14	ENST00000265085.10:ENST00000334035.9:ENST00000657000.1	protein_coding	protein_coding	protein_coding	protein_coding	0	30	2	4.273	4.414804999999999	4.55661	0.0368357	0.00927858	0.138959	0.0855292
chr11	74884876	74884975	4988559	0	-	0.323232	(0.32,0.35]	chr11	471326	209	INTRON	INTRON	XRRA1	ENSG00000166435.16	ENST00000530562.5:ENST00000340360.10:ENST00000321448.12:ENST00000684022.1:ENST00000531849.5:ENST00000527087.5:ENST00000531449.5:ENST00000529926.1:ENST00000528819.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	30	2	4.37269	4.414490000000001	4.45629	0.0246089	0.0154102	0.12011	0.108569
chr2	121479220	121479319	1220675	0	-	0.323232	(0.32,0.35]	chr2	129995	89	INTRON	INTRON	CLASP1	ENSG00000074054.20	ENST00000263710.8:ENST00000397587.7:ENST00000541377.5:ENST00000409078.8:ENST00000455322.6:ENST00000452274.6:ENST00000430234.5:ENST00000418989.5:ENST00000449975.1:ENST00000474065.5:ENST00000480007.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	30	2	4.37269	4.414490000000001	4.45629	0.0246089	0.0154102	0.12011	0.108569
chr2	197853206	197853306	969588	0	+	0.33	(0.32,0.35]	chr2	104858	425	INTRON	INTRON	PLCL1	ENSG00000115896.16	ENST00000428675.6:ENST00000435320.1:ENST00000487695.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	30	2	4.37269	4.414490000000001	4.45629	0.0246089	0.0154102	0.12011	0.108569
chr2	240011316	240011416	1345588	0	-	0.35	(0.32,0.35]	chr2	141090	3	SS5_PROX	SS5_PROX:INTRON	NDUFA10	ENSG00000130414.13	ENST00000419408.5:ENST00000679183.1:ENST00000677057.1:ENST00000676782.1:ENST00000677407.1:ENST00000676929.1:ENST00000678455.1:ENST00000252711.7:ENST00000677692.1:ENST00000476216.6:ENST00000677395.1:ENST00000678188.1:ENST00000677979.1:ENST00000678914.1:ENST00000678562.1:ENST00000678832.1:ENST00000677155.1:ENST00000677764.1:ENST00000677294.1:ENST00000678468.1:ENST00000678158.1:ENST00000676491.1:ENST00000677114.1:ENST00000404554.5:ENST00000620965.5:ENST00000485344.6:ENST00000679308.1:ENST00000677567.1:ENST00000679158.1:ENST00000443626.5:ENST00000444548.6:ENST00000448880.6:ENST00000677490.1:ENST00000307300.8:ENST00000678898.1:ENST00000677368.1:ENST00000677263.1:ENST00000678289.1:ENST00000676784.1:ENST00000414580.2:ENST00000679332.1:ENST00000678737.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	30	2	4.37269	4.414490000000001	4.45629	0.0246089	0.0154102	0.12011	0.108569
chr7	5744599	5744698	3474596	0	-	0.343434	(0.32,0.35]	chr7	324892	24	INTRON	INTRON	RNF216	ENSG00000011275.19	ENST00000425013.6:ENST00000389902.8:ENST00000389900.8:ENST00000411812.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	30	2	4.37269	4.414490000000001	4.45629	0.0246089	0.0154102	0.12011	0.108569
chr8	28982350	28982450	3725780	0	+	0.34	(0.32,0.35]	chr8	346276	18	INTRON	INTRON	HMBOX1	ENSG00000147421.18	ENST00000287701.15:ENST00000558662.5:ENST00000397358.7:ENST00000560599.5:ENST00000523613.5:ENST00000521516.5:ENST00000519047.5:ENST00000355231.9:ENST00000524238.3:ENST00000518080.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	30	2	4.37269	4.414490000000001	4.45629	0.0246089	0.0154102	0.12011	0.108569
chr9	88394409	88394509	4152106	0	+	0.34	(0.32,0.35]	chr9	378721	46	INTRON	INTRON	SPIN1	ENSG00000106723.17	ENST00000485804.5:ENST00000469017.6:ENST00000375859.4:ENST00000462844.5:ENST00000485565.6:ENST00000483785.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	30	2	4.37269	4.414490000000001	4.45629	0.0246089	0.0154102	0.12011	0.108569
chr7	76338629	76338729	3562338	0	-	0.31	(0.28,0.32]	chr7	331942	80	INTRON	INTRON	YWHAG	ENSG00000170027.7	ENST00000307630.5	protein_coding	protein_coding	protein_coding	protein_coding	1	68	2	3.35108	4.414435	5.47779	0.00221345	0.00187048	0.0435144	0.0390476
chr19	40243071	40243167	7183313	0	-	0.510417	(0.476,0.515]	chr19	726478	5	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	AKT2	ENSG00000105221.18	ENST00000392038.7:ENST00000424901.5:ENST00000476266.5:ENST00000391844.8:ENST00000584288.5:ENST00000311278.10:ENST00000579047.5:ENST00000578615.6:ENST00000601166.5:ENST00000492463.6:ENST00000537834.5:ENST00000491778.6:ENST00000578975.1:ENST00000487537.3:ENST00000441941.6:ENST00000672879.1:ENST00000486368.6:ENST00000596634.5:ENST00000452077.5:ENST00000392037.5:ENST00000416362.5:ENST00000578123.5:ENST00000672890.1:ENST00000423127.5:ENST00000358335.9:ENST00000456441.5:ENST00000583859.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	63	2	3.19975	4.41434	5.62893	0.00383299	8.45697e-5	0.0542786	0.00776967
chr13	25318359	25318455	5457347	0	+	0.427083	(0.408,0.44]	chr13	522917	6	EXON_MRNA	EXON_MRNA:INTRON	NUP58	ENSG00000139496.17	ENST00000481980.2:ENST00000490231.6:ENST00000695571.1:ENST00000477876.2:ENST00000695572.1:ENST00000463407.6:ENST00000695573.1:ENST00000381736.8:ENST00000695583.1:ENST00000466694.6:ENST00000381718.8:ENST00000695575.1:ENST00000695574.1:ENST00000495460.2:ENST00000381747.7:ENST00000695576.1:ENST00000394327.2:ENST00000695577.1:ENST00000695584.1:ENST00000476553.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	81	2	3.34369	4.413925	5.48416	5.43528e-4	1.46092e-4	0.0215026	0.0105174
chr12	116236720	116236820	5425140	0	-	0.29	(0.28,0.32]	chr12	518283	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	MED13L	ENSG00000123066.9	ENST00000281928.9:ENST00000650226.1:ENST00000548743.2:ENST00000647567.1:ENST00000551197.2:ENST00000649627.1:ENST00000648067.1:ENST00000650496.1:ENST00000648593.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	68	2	3.30893	4.413805	5.51868	0.00260504	0.00162747	0.0470772	0.0367966
chr5	94675907	94676007	2429500	0	+	0.29	(0.28,0.32]	chr5	233449	45	INTRON	INTRON	SLF1	ENSG00000133302.13	ENST00000265140.10	protein_coding	protein_coding	protein_coding	protein_coding	1	68	2	3.30893	4.413805	5.51868	0.00260504	0.00162747	0.0470772	0.0367966
chr11	61359203	61359301	4956737	0	-	0.397959	(0.378,0.408]	chr11	465833	16	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	CYB561A3	ENSG00000162144.10	ENST00000426130.6:ENST00000294072.9:ENST00000540317.5:ENST00000447532.6:ENST00000546151.5:ENST00000540755.5:ENST00000544118.5:ENST00000537364.5:ENST00000539128.5:ENST00000538263.5:ENST00000542411.5:ENST00000536687.1:ENST00000545361.5:ENST00000537680.5:ENST00000535152.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	32	2	3.82294	4.413765	5.00459	0.044228	0.00371142	0.162255	0.0535094
chr1	28214539	28214639	409176	0	-	0.3	(0.28,0.32]	chr1	49267	2	SS5_PROX	SS5_PROX:INTRON	DNAJC8	ENSG00000126698.11	ENST00000263697.6:ENST00000489277.5:ENST00000482674.5:ENST00000488868.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	31	2	4.14214	4.413705	4.68527	0.0579756	0.00819419	0.167723	0.0810802
chr1	173853905	173853997	256686	0	+	0.315217	(0.28,0.32]	chr1	30675	1	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	DARS2	ENSG00000117593.12	ENST00000648807.1:ENST00000648960.1:ENST00000647788.1:ENST00000647730.1:ENST00000649067.1:ENST00000649689.2:ENST00000648271.1:ENST00000647645.1:ENST00000471476.2:ENST00000650297.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	31	2	4.14214	4.413705	4.68527	0.0579756	0.00819419	0.167723	0.0810802
chr1	212342780	212342877	308654	0	+	0.309278	(0.28,0.32]	chr1	35598	1	INTRON	INTRON	PPP2R5A	ENSG00000066027.12	ENST00000261461.7:ENST00000537030.3	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.14214	4.413705	4.68527	0.0579756	0.00819419	0.167723	0.0810802
chr15	65871873	65871973	6048592	0	+	0.31	(0.28,0.32]	chr15	575900	14	INTRON	INTRON	RAB11A	ENSG00000103769.10	ENST00000569304.1:ENST00000568850.5:ENST00000564910.5:ENST00000566233.5:ENST00000261890.7:ENST00000565075.5:ENST00000569896.1:ENST00000567671.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	31	2	4.14214	4.413705	4.68527	0.0579756	0.00819419	0.167723	0.0810802
chr17	35663101	35663200	6600314	0	+	0.30303	(0.28,0.32]	chr17	642324	31	INTRON	INTRON	AP2B1	ENSG00000006125.18	ENST00000621914.4:ENST00000620039.4:ENST00000616681.4:ENST00000621668.4:ENST00000610402.5:ENST00000612035.4:ENST00000614600.4:ENST00000612116.5:ENST00000618940.4:ENST00000619183.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	31	2	4.14214	4.413705	4.68527	0.0579756	0.00819419	0.167723	0.0810802
chr18	62275472	62275572	6922203	0	+	0.29	(0.28,0.32]	chr18	685105	2	CDS	CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	RELCH	ENSG00000134444.15	ENST00000644646.2:ENST00000256858.10:ENST00000398130.6:ENST00000587725.5:ENST00000588446.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay	0	31	2	4.14214	4.413705	4.68527	0.0579756	0.00819419	0.167723	0.0810802
chr4	73125812	73125910	2159481	0	-	0.316327	(0.28,0.32]	chr4	212706	1	INTRON	INTRON	ANKRD17	ENSG00000132466.20	ENST00000358602.9:ENST00000558247.5:ENST00000330838.10:ENST00000509867.6:ENST00000561029.1:ENST00000514252.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	31	2	4.14214	4.413705	4.68527	0.0579756	0.00819419	0.167723	0.0810802
chr8	15541068	15541167	3704144	0	+	0.313131	(0.28,0.32]	chr8	343552	1	INTRON	INTRON	TUSC3	ENSG00000104723.21	ENST00000503191.5:ENST00000382020.8:ENST00000515859.5:ENST00000506802.5:ENST00000503731.6:ENST00000510836.5:ENST00000509380.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	31	2	4.14214	4.413705	4.68527	0.0579756	0.00819419	0.167723	0.0810802
chr8	106719155	106719254	3846635	0	+	0.313131	(0.28,0.32]	chr8	354227	48	INTRON	INTRON	OXR1	ENSG00000164830.19	ENST00000517566.7:ENST00000531443.6:ENST00000442977.6:ENST00000435082.1:ENST00000312046.10:ENST00000519415.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	31	2	4.14214	4.413705	4.68527	0.0579756	0.00819419	0.167723	0.0810802
chr21	46224802	46224900	7470840	0	-	0.602041	(0.57,1]	chr21	761544	17	INTRON	INTRON	LSS	ENSG00000160285.15	ENST00000356396.8:ENST00000397728.8:ENST00000457828.6:ENST00000522411.5:ENST00000464357.1:ENST00000450351.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	145	2	3.63594	4.413555	5.19117	5.33797e-8	2.1274e-9	9.25393e-5	1.26299e-5
chr9	128187562	128187662	4357812	0	-	0.3	(0.28,0.32]	chr9	400299	3	SS5_PROX	SS5_PROX:INTRON	CIZ1	ENSG00000148337.22	ENST00000651955.1:ENST00000372938.10:ENST00000372954.5:ENST00000538431.5:ENST00000357558.9:ENST00000629610.2:ENST00000372948.7:ENST00000277465.8:ENST00000634901.1:ENST00000415526.5:ENST00000476727.6:ENST00000488559.6:ENST00000467178.5:ENST00000491954.5:ENST00000498156.5:ENST00000324544.6:ENST00000474442.1:ENST00000420484.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	73	2	3.89776	4.413525	4.92929	0.0098607	2.03846e-4	0.0838128	0.0124395
chr1	15621491	15621591	33518	0	+	0.44	(0.408,0.44]	chr1	4078	33	INTRON	INTRON	DDI2	ENSG00000197312.12	ENST00000480945.6:ENST00000486680.1:ENST00000546927.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	29	2	4.12187	4.412985000000001	4.7041	0.0354689	0.00381677	0.137535	0.0562562
chr1	155764064	155764154	563492	0	-	0.433333	(0.408,0.44]	chr1	67269	1	INTRON	INTRON	GON4L	ENSG00000116580.20	ENST00000368331.6:ENST00000615926.4:ENST00000437809.5:ENST00000271883.9	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	4.12187	4.412985000000001	4.7041	0.0354689	0.00381677	0.137535	0.0562562
chr11	77780466	77780566	4995574	0	-	0.43	(0.408,0.44]	chr11	472047	154	INTRON	INTRON	RSF1	ENSG00000048649.14	ENST00000308488.11:ENST00000528095.5:ENST00000440064.2:ENST00000467567.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	29	2	4.12187	4.412985000000001	4.7041	0.0354689	0.00381677	0.137535	0.0562562
chr13	21397300	21397398	5556862	0	-	0.428571	(0.408,0.44]	chr13	531134	51	INTRON	INTRON	ZDHHC20	ENSG00000180776.16	ENST00000400590.8:ENST00000542645.5:ENST00000382466.7:ENST00000320220.13:ENST00000494731.5:ENST00000415724.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	29	2	4.12187	4.412985000000001	4.7041	0.0354689	0.00381677	0.137535	0.0562562
chr15	41082671	41082771	6152897	0	-	0.42	(0.408,0.44]	chr15	585399	12	INTRON	INTRON	INO80	ENSG00000128908.18	ENST00000648947.1:ENST00000401393.7:ENST00000558357.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	29	2	4.12187	4.412985000000001	4.7041	0.0354689	0.00381677	0.137535	0.0562562
chr19	21842644	21842744	7159700	0	-	0.42	(0.408,0.44]	chr19	723793	1	SS5_PROX	SS5_PROX:INTRON	ZNF43	ENSG00000198521.12	ENST00000357491.10:ENST00000594012.5:ENST00000595461.5:ENST00000598381.5:ENST00000596899.1	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	4.12187	4.412985000000001	4.7041	0.0354689	0.00381677	0.137535	0.0562562
chr7	133541612	133541712	3421062	0	+	0.44	(0.408,0.44]	chr7	319376	576	INTRON	INTRON	EXOC4	ENSG00000131558.15	ENST00000486013.5:ENST00000253861.5:ENST00000486409.6:ENST00000479839.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	29	2	4.12187	4.412985000000001	4.7041	0.0354689	0.00381677	0.137535	0.0562562
chr9	125006159	125006258	4350600	0	-	0.424242	(0.408,0.44]	chr9	399484	22	INTRON	INTRON	SCAI	ENSG00000173611.18	ENST00000336505.11:ENST00000373549.8:ENST00000477186.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	29	2	4.12187	4.412985000000001	4.7041	0.0354689	0.00381677	0.137535	0.0562562
chr15	94914438	94914537	6105778	0	+	0.30303	(0.28,0.32]	chr15	581682	95	INTRON	INTRON	ENSG00000277654	ENSG00000277654.6	ENST00000618611.4:ENST00000648065.1:ENST00000618377.1:ENST00000621842.4:ENST00000615751.4:ENST00000614581.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	0	31	2	4.23719	4.41297	4.58875	0.0264147	0.0230574	0.133676	0.118056
chr2	32065325	32065421	728827	0	+	0.3125	(0.28,0.32]	chr2	84037	7	INTRON	INTRON	SPAST	ENSG00000021574.13	ENST00000315285.9:ENST00000646571.1:ENST00000621856.2:ENST00000642455.1:ENST00000642281.1:ENST00000644408.1:ENST00000642751.1:ENST00000642999.1:ENST00000644954.1:ENST00000645400.1:ENST00000646082.1:ENST00000645671.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	31	2	4.23719	4.41297	4.58875	0.0264147	0.0230574	0.133676	0.118056
chr4	168993611	168993711	2294505	0	-	0.31	(0.28,0.32]	chr4	222054	29	INTRON	INTRON	CBR4	ENSG00000145439.12	ENST00000510042.5:ENST00000509108.1:ENST00000306193.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	31	2	4.23719	4.41297	4.58875	0.0264147	0.0230574	0.133676	0.118056
chr7	5735235	5735333	3474499	0	-	0.316327	(0.28,0.32]	chr7	324877	17	INTRON	INTRON	RNF216	ENSG00000011275.19	ENST00000425013.6:ENST00000389902.8:ENST00000389900.8:ENST00000479541.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	31	2	4.23719	4.41297	4.58875	0.0264147	0.0230574	0.133676	0.118056
chr7	7231009	7231109	3275078	0	+	0.3	(0.28,0.32]	chr7	304579	206	INTRON	INTRON	C1GALT1	ENSG00000106392.11	ENST00000429911.5:ENST00000436587.7:ENST00000476068.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	31	2	4.23719	4.41297	4.58875	0.0264147	0.0230574	0.133676	0.118056
chr15	52046369	52046460	6029295	0	+	0.318681	(0.28,0.32]	chr15	574436	7	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	MAPK6	ENSG00000069956.14	ENST00000691380.1:ENST00000681888.1:ENST00000261845.7:ENST00000680066.1:ENST00000680777.1:ENST00000680652.1:ENST00000558841.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	71	2	3.77927	4.41253	5.04579	0.00714672	3.56863e-4	0.0723634	0.0169148
chr2	201052269	201052369	1311703	0	-	0.52	(0.515,0.57]	chr2	137307	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	FAM126B	ENSG00000155744.10	ENST00000681958.1:ENST00000418596.7:ENST00000286181.7:ENST00000498780.5:ENST00000452799.5:ENST00000453765.5:ENST00000446678.5:ENST00000474118.5:ENST00000485636.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	57	2	3.30665	4.4124799999999995	5.51831	0.00213226	6.99834e-5	0.041756	0.00692586
chr14	54885727	54885827	5898967	0	-	0.51	(0.476,0.515]	chr14	560233	199	INTRON	INTRON	GCH1	ENSG00000131979.20	ENST00000395514.5:ENST00000543643.6:ENST00000491895.7:ENST00000254299.8:ENST00000536224.2:ENST00000395521.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	86	2	3.61787	4.41216	5.20645	0.00136049	3.07966e-5	0.0336321	0.004431
chr1	54188082	54188182	461800	0	-	0.44	(0.408,0.44]	chr1	55665	2	SS3_PROX	SS3_PROX:INTRON	CYB5RL	ENSG00000215883.11	ENST00000534324.6:ENST00000287899.13:ENST00000421415.5:ENST00000420054.5:ENST00000490863.5:ENST00000528287.5:ENST00000493530.2:ENST00000462299.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	29	2	4.22447	4.412129999999999	4.59979	0.0161655	0.0109537	0.109464	0.0873034
chr17	1376838	1376938	6699375	0	-	0.42	(0.408,0.44]	chr17	655552	67	INTRON	INTRON	YWHAE	ENSG00000108953.17	ENST00000264335.13:ENST00000571732.5:ENST00000573026.1:ENST00000573196.5:ENST00000575977.1:ENST00000469398.5:ENST00000486241.1:ENST00000489287.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	29	2	4.22447	4.412129999999999	4.59979	0.0161655	0.0109537	0.109464	0.0873034
chr4	864321	864421	2093583	0	-	0.44	(0.408,0.44]	chr4	206857	42	INTRON	INTRON	GAK	ENSG00000178950.18	ENST00000314167.9:ENST00000511163.5:ENST00000509566.1:ENST00000515868.5:ENST00000511980.5:ENST00000510799.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	29	2	4.22447	4.412129999999999	4.59979	0.0161655	0.0109537	0.109464	0.0873034
chr6	156940804	156940904	3008798	0	+	0.42	(0.408,0.44]	chr6	281123	44	UTR3	UTR3:EXON_MRNA:INTRON	ARID1B	ENSG00000049618.24	ENST00000346085.10:ENST00000636930.2:ENST00000647938.1:ENST00000350026.10:ENST00000674298.1:ENST00000674190.1:ENST00000636748.1:ENST00000414678.7:ENST00000638000.1:ENST00000319584.11:ENST00000452544.2:ENST00000637887.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	29	2	4.22447	4.412129999999999	4.59979	0.0161655	0.0109537	0.109464	0.0873034
chr7	73440504	73440603	3554259	0	-	0.424242	(0.408,0.44]	chr7	330708	2	UTR3	UTR3:EXON_MRNA	BAZ1B	ENSG00000009954.11	ENST00000339594.9	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	4.22447	4.412129999999999	4.59979	0.0161655	0.0109537	0.109464	0.0873034
chr3	121542076	121542174	1798424	0	-	0.469388	(0.44,0.476]	chr3	180585	2	INTRON	INTRON	POLQ	ENSG00000051341.15	ENST00000264233.6	protein_coding	protein_coding	protein_coding	protein_coding	1	65	2	2.81896	4.41185	6.00474	0.0120766	4.73674e-5	0.0962311	0.00593269
chr8	129523375	129523475	4060516	0	-	0.23	[0,0.28]	chr8	369648	128	INTRON	INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1:ENST00000676273.1:ENST00000667643.1:ENST00000668791.1:ENST00000663716.1:ENST00000663572.1:ENST00000676148.1:ENST00000667962.1:ENST00000674877.1:ENST00000675316.1:ENST00000674656.1:ENST00000446592.7:ENST00000667341.1:ENST00000675186.1:ENST00000652971.1:ENST00000661447.1:ENST00000674863.1:ENST00000675498.1:ENST00000675527.1:ENST00000676108.1:ENST00000657647.1:ENST00000675589.1:ENST00000675913.1:ENST00000675109.1:ENST00000671632.1:ENST00000671311.1:ENST00000676099.1:ENST00000660652.1:ENST00000675522.1:ENST00000675183.1:ENST00000658861.1:ENST00000663991.1:ENST00000675044.1:ENST00000675435.1:ENST00000674639.1:ENST00000676069.1:ENST00000675532.1:ENST00000674762.1:ENST00000523151.6:ENST00000675948.1:ENST00000665364.1:ENST00000657251.1:ENST00000675166.1:ENST00000674883.1:ENST00000675867.1:ENST00000674580.1:ENST00000675393.1:ENST00000520048.1:ENST00000674906.1:ENST00000676030.1:ENST00000670588.1:ENST00000675072.1:ENST00000664936.1:ENST00000652914.1:ENST00000657069.1	lncRNA	lncRNA	lncRNA	lncRNA	2	101	2	2.56073	4.41172	6.26271	0.00743095	2.29235e-4	0.0772645	0.0138892
chr9	97672277	97672375	4173021	0	+	0.27551	[0,0.28]	chr9	380260	12	UTR3	UTR3:EXON_MRNA	NCBP1	ENSG00000136937.13	ENST00000375147.8	protein_coding	protein_coding	protein_coding	protein_coding	2	101	2	2.56073	4.41172	6.26271	0.00743095	2.29235e-4	0.0772645	0.0138892
chr1	75676546	75676646	490443	0	-	0.4	(0.378,0.408]	chr1	58159	337	INTRON	INTRON	ENSG00000230863	ENSG00000230863.3	ENST00000648424.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	0	29	2	4.21563	4.41167	4.60771	0.0315429	0.00567576	0.13151	0.0678837
chr10	28606292	28606391	4414544	0	+	0.40404	(0.378,0.408]	chr10	407171	99	INTRON	INTRON	WAC	ENSG00000095787.24	ENST00000680735.1:ENST00000375664.8:ENST00000428935.6:ENST00000628285.3:ENST00000681112.1:ENST00000679570.1:ENST00000375646.5:ENST00000354911.9:ENST00000347934.8:ENST00000420266.6:ENST00000679398.1:ENST00000424454.5:ENST00000442148.6:ENST00000414108.6:ENST00000679428.1:ENST00000439676.5:ENST00000345541.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	29	2	4.21563	4.41167	4.60771	0.0315429	0.00567576	0.13151	0.0678837
chr15	72574568	72574667	6060177	0	+	0.393939	(0.378,0.408]	chr15	576921	18	INTRON	INTRON	ARIH1	ENSG00000166233.15	ENST00000379887.9:ENST00000561987.5:ENST00000565950.1:ENST00000561770.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	29	2	4.21563	4.41167	4.60771	0.0315429	0.00567576	0.13151	0.0678837
chr4	53406427	53406527	1959741	0	+	0.4	(0.378,0.408]	chr4	196437	62	INTRON	INTRON	FIP1L1	ENSG00000145216.16	ENST00000337488.11:ENST00000358575.9:ENST00000507922.5:ENST00000306932.10:ENST00000505125.5:ENST00000513975.5:ENST00000514543.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	29	2	4.21563	4.41167	4.60771	0.0315429	0.00567576	0.13151	0.0678837
chr8	9682198	9682298	3700776	0	+	0.39	(0.378,0.408]	chr8	343221	10	INTRON	INTRON	TNKS	ENSG00000173273.16	ENST00000310430.11:ENST00000520408.5:ENST00000518281.5:ENST00000518027.5:ENST00000519392.5:ENST00000517989.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	29	2	4.21563	4.41167	4.60771	0.0315429	0.00567576	0.13151	0.0678837
chr8	29249385	29249484	3931051	0	-	0.40404	(0.378,0.408]	chr8	360045	36	INTRON	INTRON	KIF13B	ENSG00000197892.13	ENST00000524189.6:ENST00000522355.5:ENST00000521515.1:ENST00000523968.1:ENST00000522846.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	29	2	4.21563	4.41167	4.60771	0.0315429	0.00567576	0.13151	0.0678837
chr8	97712372	97712471	3809749	0	+	0.393939	(0.378,0.408]	chr8	352878	53	INTRON	INTRON	MTDH	ENSG00000147649.10	ENST00000336273.8:ENST00000519934.5:ENST00000519293.1:ENST00000521933.1:ENST00000522104.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	29	2	4.21563	4.41167	4.60771	0.0315429	0.00567576	0.13151	0.0678837
chr9	98813763	98813863	4173712	0	+	0.4	(0.378,0.408]	chr9	380354	53	INTRON	INTRON	GALNT12	ENSG00000119514.7	ENST00000375011.4:ENST00000610463.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	29	2	4.21563	4.41167	4.60771	0.0315429	0.00567576	0.13151	0.0678837
chr9	112290856	112290956	4317531	0	-	0.4	(0.378,0.408]	chr9	397072	145	INTRON	INTRON	PTBP3	ENSG00000119314.16	ENST00000334318.10:ENST00000458258.5:ENST00000374257.6:ENST00000374255.6:ENST00000343327.6:ENST00000487997.1:ENST00000210227.4:ENST00000450374.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	29	2	4.21563	4.41167	4.60771	0.0315429	0.00567576	0.13151	0.0678837
chr22	49585054	49585153	7601930	0	-	0.535354	(0.515,0.57]	chr22	778566	1435	INTRON	INTRON	MIR3667HG	ENSG00000188511.13	ENST00000414287.5:ENST00000416411.1	lncRNA	lncRNA	lncRNA	lncRNA	2	72	2	3.12673	4.41124	5.69575	3.95089e-4	7.34886e-5	0.0178567	0.00767614
chr9	123855868	123855968	4345282	0	-	0.52	(0.515,0.57]	chr9	399130	575	INTRON	INTRON	DENND1A	ENSG00000119522.17	ENST00000373624.6:ENST00000394215.7:ENST00000373620.7:ENST00000373618.1	protein_coding	protein_coding	protein_coding	protein_coding	1	56	2	3.12663	4.41119	5.69575	0.00374498	7.34886e-5	0.0562234	0.00767614
chr1	100133415	100133515	172074	0	+	0.39	(0.378,0.408]	chr1	18660	1	SS5_PROX	SS5_PROX:INTRON	TRMT13	ENSG00000122435.11	ENST00000370143.5:ENST00000370141.8:ENST00000482437.5:ENST00000370139.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	29	2	4.32174	4.41115	4.50056	0.015974	0.0132362	0.101453	0.0999551
chr1	162593183	162593265	238643	0	+	0.378049	(0.378,0.408]	chr1	28746	2	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	UAP1:ENSG00000272574	ENSG00000117143.14:ENSG00000272574.1	ENST00000367925.6:ENST00000367926.9:ENST00000609669.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	0	29	2	4.32174	4.41115	4.50056	0.015974	0.0132362	0.101453	0.0999551
chr1	180882924	180883021	272119	0	+	0.402062	(0.378,0.408]	chr1	31692	23	INTRON	INTRON	XPR1	ENSG00000143324.14	ENST00000367590.9:ENST00000367589.3	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	4.32174	4.41115	4.50056	0.015974	0.0132362	0.101453	0.0999551
chr1	229476904	229477000	653005	0	-	0.40625	(0.378,0.408]	chr1	77339	8	INTRON	INTRON	NUP133	ENSG00000069248.12	ENST00000261396.6	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	4.32174	4.41115	4.50056	0.015974	0.0132362	0.101453	0.0999551
chr10	7308449	7308549	4551907	0	-	0.38	(0.378,0.408]	chr10	420230	221	INTRON	INTRON	SFMBT2	ENSG00000198879.13	ENST00000397167.6:ENST00000361972.8:ENST00000684547.1:ENST00000683762.1:ENST00000673876.1:ENST00000682896.1:ENST00000379713.8:ENST00000682101.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	29	2	4.32174	4.41115	4.50056	0.015974	0.0132362	0.101453	0.0999551
chr11	3361642	3361742	4893668	0	-	0.39	(0.378,0.408]	chr11	458663	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ZNF195	ENSG00000005801.18	ENST00000528796.5:ENST00000399602.9:ENST00000354599.10:ENST00000343338.11:ENST00000620374.4:ENST00000649622.1:ENST00000429541.6:ENST00000005082.13:ENST00000526601.5:ENST00000438262.6:ENST00000528410.5:ENST00000528218.5:ENST00000529789.5:ENST00000525313.6:ENST00000533036.5:ENST00000529228.5:ENST00000526540.5:ENST00000529678.5:ENST00000526598.1:ENST00000528636.1:ENST00000427810.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	29	2	4.32174	4.41115	4.50056	0.015974	0.0132362	0.101453	0.0999551
chr15	89614215	89614315	6097502	0	+	0.38	(0.378,0.408]	chr15	580351	49	INTRON	INTRON	TICRR	ENSG00000140534.14	ENST00000268138.12:ENST00000560985.5	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	4.32174	4.41115	4.50056	0.015974	0.0132362	0.101453	0.0999551
chr17	75041431	75041524	6835801	0	-	0.397849	(0.378,0.408]	chr17	675418	1	EXON_MRNA	EXON_MRNA:INTRON	ATP5PD	ENSG00000167863.12	ENST00000344546.8:ENST00000301587.9:ENST00000538432.2:ENST00000582341.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	29	2	4.32174	4.41115	4.50056	0.015974	0.0132362	0.101453	0.0999551
chr19	319838	319938	7109354	0	-	0.39	(0.378,0.408]	chr19	713786	58	INTRON	INTRON	MIER2	ENSG00000105556.12	ENST00000264819.7	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	4.32174	4.41115	4.50056	0.015974	0.0132362	0.101453	0.0999551
chr6	143678509	143678609	2979848	0	+	0.4	(0.378,0.408]	chr6	279270	3	SS5_PROX	SS5_PROX:INTRON	PHACTR2	ENSG00000112419.15	ENST00000367584.8:ENST00000427704.6:ENST00000305766.10:ENST00000440869.7:ENST00000367582.7:ENST00000402863.3:ENST00000451827.6:ENST00000542769.5:ENST00000397980.3:ENST00000545919.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	29	2	4.32174	4.41115	4.50056	0.015974	0.0132362	0.101453	0.0999551
chr7	129458946	129459016	3411810	0	+	0.385714	(0.378,0.408]	chr7	318943	2	SS5_PROX	SS5_PROX:INTRON	STRIP2	ENSG00000128578.10	ENST00000249344.7:ENST00000435494.2:ENST00000465033.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	29	2	4.32174	4.41115	4.50056	0.015974	0.0132362	0.101453	0.0999551
chrX	134492719	134492815	7724400	0	+	0.395833	(0.378,0.408]	chrX	790178	22	INTRON	INTRON	HPRT1	ENSG00000165704.15	ENST00000298556.8:ENST00000462974.5:ENST00000475720.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	29	2	4.32174	4.41115	4.50056	0.015974	0.0132362	0.101453	0.0999551
chr8	104528614	104528714	4014117	0	-	0.58	(0.57,1]	chr8	367433	192	INTRON	INTRON	LRP12	ENSG00000147650.12	ENST00000424843.6:ENST00000276654.10:ENST00000520770.1:ENST00000519675.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	40	2	3.48337	4.409725	5.33608	6.20854e-4	3.92497e-5	0.0223951	0.00533644
chrX	134394798	134394898	7723719	0	+	0.46	(0.44,0.476]	chrX	790118	7	UTR3	UTR3:EXON_MRNA:INTRON	PHF6	ENSG00000156531.18	ENST00000685047.1:ENST00000687496.1:ENST00000685553.1:ENST00000625464.2:ENST00000370803.8:ENST00000332070.7:ENST00000370799.5:ENST00000691812.1:ENST00000688598.1:ENST00000693759.1:ENST00000370800.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	86	2	2.59632	4.409625	6.22293	0.00579248	2.91965e-6	0.0662959	0.00109445
chr4	153586293	153586379	2068466	0	+	0.337209	(0.32,0.35]	chr4	204628	2	CDS	CDS:EXON_MRNA	TMEM131L	ENSG00000121210.16	ENST00000409663.7:ENST00000409959.8:ENST00000240487.5:ENST00000509565.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	66	2	3.68775	4.40949	5.13123	0.00394704	4.66127e-4	0.0548259	0.0195589
chr10	45863268	45863363	4607563	0	-	0.368421	(0.35,0.378]	chr10	424442	4	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	PARGP1	ENSG00000239883.9	ENST00000440803.7:ENST00000610690.1:ENST00000688192.1:ENST00000686367.1:ENST00000693310.1	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript	2	83	2	3.05367	4.409085	5.7645	7.17897e-4	2.7432e-4	0.0244389	0.0151711
chr2	108558434	108558534	846086	0	+	0.54	(0.515,0.57]	chr2	94661	235	INTRON	INTRON	LIMS1	ENSG00000169756.17	ENST00000695516.1:ENST00000544547.6:ENST00000695517.1	protein_coding	protein_coding	protein_coding	protein_coding	3	87	2	2.61581	4.40888	6.20195	0.00127505	4.60806e-6	0.0331722	0.00157843
chr2	26277360	26277460	714491	0	+	0.5	(0.476,0.515]	chr2	82516	2	SS5_PROX	SS5_PROX:INTRON	HADHB	ENSG00000138029.14	ENST00000448743.5:ENST00000537713.5:ENST00000405867.7:ENST00000317799.10:ENST00000425035.5:ENST00000494615.1:ENST00000545822.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	79	2	2.96824	4.40872	5.8492	9.98194e-4	8.94204e-5	0.0290732	0.00844245
chrX	111702738	111702838	7702234	0	+	0.36	(0.35,0.378]	chrX	788221	127	INTRON	INTRON	ALG13	ENSG00000101901.12	ENST00000487141.5:ENST00000394780.8:ENST00000251943.8:ENST00000610588.4:ENST00000621367.4:ENST00000622997.3:ENST00000624161.3:ENST00000636363.1:ENST00000624881.3:ENST00000495283.5:ENST00000486353.5:ENST00000623144.3:ENST00000470971.5:ENST00000623148.3:ENST00000471924.5:ENST00000436609.5:ENST00000470704.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	64	2	3.77198	4.40855	5.04512	0.00393262	2.78147e-4	0.0548259	0.0148626
chr10	73125809	73125909	4452229	0	+	0.49	(0.476,0.515]	chr10	410862	3	SS5_PROX	SS5_PROX:INTRON	NUDT13	ENSG00000166321.14	ENST00000537969.5:ENST00000544879.5:ENST00000617744.4:ENST00000357321.9:ENST00000349051.9:ENST00000488223.5:ENST00000372997.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	61	2	3.07422	4.407885	5.74155	0.00506023	1.47804e-4	0.0646039	0.0111067
chr4	126713875	126713975	2237849	0	-	0.25	[0,0.28]	chr4	219029	152	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	1	73	2	3.2621000000000002	4.407830000000001	5.55356	0.00367113	0.00278704	0.056059199999999997	0.0469265
chr5	40760085	40760185	2610774	0	-	0.26	[0,0.28]	chr5	248215	8	UTR3	UTR3:EXON_MRNA	PRKAA1	ENSG00000132356.12	ENST00000397128.7	protein_coding	protein_coding	protein_coding	protein_coding	1	73	2	3.2621000000000002	4.407830000000001	5.55356	0.00367113	0.00278704	0.056059199999999997	0.0469265
chr15	52027794	52027873	6029108	0	+	0.582278	(0.57,1]	chr15	574424	3	EXON_LNCRNA	EXON_LNCRNA:INTRON	MAPK6	ENSG00000069956.14	ENST00000560802.1:ENST00000691380.1:ENST00000558063.5:ENST00000560254.1:ENST00000681888.1:ENST00000261845.7:ENST00000680066.1:ENST00000680777.1:ENST00000558100.1:ENST00000680652.1:ENST00000558841.1:ENST00000558891.1:ENST00000560774.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	22	2	4.37136	4.40751	4.44366	0.00345135	0.00210922	0.0517761	0.0425419
chr20	17966205	17966304	7320546	0	-	0.515152	(0.476,0.515]	chr20	745337	34	INTRON	INTRON	SNX5	ENSG00000089006.17	ENST00000377768.7:ENST00000490175.5:ENST00000377759.9:ENST00000431277.5:ENST00000419004.2:ENST00000474883.5:ENST00000469704.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	142	2	2.31315	4.40749	6.50183	0.00112683	5.30801e-7	0.030721	3.93146e-4
chr22	20613935	20614035	7557656	0	-	0.33	(0.32,0.35]	chr22	772875	2	SS3_PROX	SS3_PROX:INTRON	SMPD4P1	ENSG00000223553.6	ENST00000416717.6	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	1	70	2	3.16237	4.4072949999999995	5.65222	0.00550276	1.55757e-4	0.0648867	0.0106835
chr3	33084627	33084727	1651041	0	-	0.37	(0.35,0.378]	chr3	169303	70	INTRON	INTRON	GLB1	ENSG00000170266.16	ENST00000399402.7:ENST00000307363.10:ENST00000307377.12:ENST00000482097.5:ENST00000485698.5:ENST00000498537.5:ENST00000415454.1:ENST00000438227.1:ENST00000440656.1:ENST00000464355.1:ENST00000450835.1:ENST00000436768.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	62	2	3.45621	4.407245	5.35828	0.00135282	0.0011842	0.0336321	0.031662
chr1	88784238	88784338	156775	0	+	0.55	(0.515,0.57]	chr1	17072	2	SS3_PROX	SS3_PROX:INTRON	PKN2	ENSG00000065243.20	ENST00000316005.11:ENST00000370521.8:ENST00000370513.9:ENST00000436111.1	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.31326	4.40714	4.50102	0.0141817	0.00510768	0.0959618	0.0646039
chr11	250865	250962	4718188	0	+	0.556701	(0.515,0.57]	chr11	435681	1	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	PSMD13	ENSG00000185627.19	ENST00000532097.6:ENST00000431206.6:ENST00000528906.5:ENST00000525665.5:ENST00000352303.9:ENST00000382671.8:ENST00000526783.1:ENST00000533717.5:ENST00000527982.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	27	2	4.31326	4.40714	4.50102	0.0141817	0.00510768	0.0959618	0.0646039
chr17	28355394	28355494	6744044	0	-	0.52	(0.515,0.57]	chr17	662239	2	SS5_PROX	SS5_PROX:INTRON	POLDIP2	ENSG00000004142.12	ENST00000540200.6:ENST00000618887.2	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.31326	4.40714	4.50102	0.0141817	0.00510768	0.0959618	0.0646039
chr17	44144114	44144212	6615490	0	+	0.530612	(0.515,0.57]	chr17	645073	16	INTRON	INTRON	HROB	ENSG00000125319.15	ENST00000319977.8:ENST00000585683.6:ENST00000245382.6	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.31326	4.40714	4.50102	0.0141817	0.00510768	0.0959618	0.0646039
chr20	31546312	31546409	7253300	0	+	0.56701	(0.515,0.57]	chr20	736634	9	INTRON	INTRON	HM13	ENSG00000101294.18	ENST00000335574.10:ENST00000674240.1:ENST00000340852.9:ENST00000398174.9:ENST00000649820.1:ENST00000466766.2:ENST00000650367.1:ENST00000496438.5:ENST00000344042.5:ENST00000649374.1:ENST00000460225.5:ENST00000469126.5:ENST00000492709.5:ENST00000469097.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	27	2	4.31326	4.40714	4.50102	0.0141817	0.00510768	0.0959618	0.0646039
chr6	13646218	13646317	3058565	0	-	0.525253	(0.515,0.57]	chr6	284524	11	INTRON	INTRON	RANBP9	ENSG00000010017.13	ENST00000011619.6	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.31326	4.40714	4.50102	0.0141817	0.00510768	0.0959618	0.0646039
chr1	23482428	23482526	400278	0	-	0.530612	(0.515,0.57]	chr1	48035	24	INTRON	INTRON	ASAP3	ENSG00000088280.20	ENST00000336689.8:ENST00000492982.6:ENST00000437606.6:ENST00000478858.5:ENST00000608765.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	27	2	4.399	4.40699	4.41498	0.0106866	0.00708863	0.0861859	0.0754923
chr1	220257205	220257305	640681	0	-	0.53	(0.515,0.57]	chr1	75586	240	INTRON	INTRON	RAB3GAP2	ENSG00000118873.17	ENST00000358951.7:ENST00000687065.1:ENST00000686381.1:ENST00000687647.1:ENST00000692972.1:ENST00000690315.1:ENST00000691862.1:ENST00000691661.1:ENST00000690373.1:ENST00000693602.1:ENST00000692813.1:ENST00000685286.1:ENST00000688035.1:ENST00000685664.1:ENST00000690824.1:ENST00000687394.1:ENST00000690379.1:ENST00000478976.1:ENST00000237724.9:ENST00000689820.1:ENST00000474178.1:ENST00000692208.1:ENST00000688281.1:ENST00000684982.1:ENST00000475769.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	27	2	4.399	4.40699	4.41498	0.0106866	0.00708863	0.0861859	0.0754923
chr10	21942635	21942735	4578072	0	-	0.53	(0.515,0.57]	chr10	421947	131	INTRON	INTRON	DNAJC1	ENSG00000136770.11	ENST00000376980.8:ENST00000476103.3:ENST00000447548.5:ENST00000376946.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	27	2	4.399	4.40699	4.41498	0.0106866	0.00708863	0.0861859	0.0754923
chr19	45124315	45124415	7079350	0	+	0.54	(0.515,0.57]	chr19	708078	155	INTRON	INTRON	PPP1R37	ENSG00000104866.11	ENST00000544069.2:ENST00000221462.9:ENST00000544897.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	27	2	4.399	4.40699	4.41498	0.0106866	0.00708863	0.0861859	0.0754923
chr20	429394	429494	7219404	0	+	0.52	(0.515,0.57]	chr20	733601	3	SS5_PROX	SS5_PROX:INTRON	RBCK1	ENSG00000125826.21	ENST00000382214.7:ENST00000415942.5:ENST00000640614.1:ENST00000353660.7:ENST00000356286.10:ENST00000382181.2:ENST00000468272.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	27	2	4.399	4.40699	4.41498	0.0106866	0.00708863	0.0861859	0.0754923
chr4	152466456	152466556	2274393	0	-	0.56	(0.515,0.57]	chr4	221120	143	INTRON	INTRON	FBXW7	ENSG00000109670.16	ENST00000281708.10:ENST00000603548.6:ENST00000604872.6:ENST00000647166.1:ENST00000643834.1:ENST00000642901.1	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.399	4.40699	4.41498	0.0106866	0.00708863	0.0861859	0.0754923
chr18	734249	734347	6939912	0	-	0.602041	(0.57,1]	chr18	686461	9	INTRON	INTRON	YES1	ENSG00000176105.14	ENST00000584307.5:ENST00000314574.5:ENST00000577961.5	protein_coding	protein_coding	protein_coding	protein_coding	4	126	2	4.18202	4.4069199999999995	4.63182	1.64154e-7	3.21042e-9	1.8594e-4	1.2263700000000001e-05
chr22	21691184	21691284	7482721	0	+	0.49	(0.476,0.515]	chr22	763395	4	SS3_PROX	SS3_PROX:INTRON	PPIL2	ENSG00000100023.20	ENST00000679795.1:ENST00000679540.1:ENST00000679580.1:ENST00000681286.1:ENST00000680061.1:ENST00000681338.1:ENST00000681956.1:ENST00000679827.1:ENST00000679534.1:ENST00000679479.1:ENST00000680393.1:ENST00000335025.12:ENST00000498109.2:ENST00000398831.8:ENST00000681394.1:ENST00000679477.1:ENST00000626352.2:ENST00000417788.5:ENST00000681791.1:ENST00000679692.1:ENST00000680962.1:ENST00000680094.1:ENST00000680434.1:ENST00000680109.1:ENST00000406385.1:ENST00000681137.1:ENST00000680860.1:ENST00000680183.1:ENST00000446951.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	79	2	2.93046	4.406915	5.88337	0.00118985	7.59355e-5	0.031662	0.00777694
chr1	3883840	3883939	3588	0	+	0.313131	(0.28,0.32]	chr1	762	2	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	DFFB	ENSG00000169598.17	ENST00000338895.7:ENST00000491998.5:ENST00000468793.5:ENST00000339350.7:ENST00000477548.5:ENST00000378209.8:ENST00000378206.5:ENST00000475969.5:ENST00000461150.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	32	2	4.01002	4.4062850000000005	4.80255	0.0434868	0.0137406	0.162255	0.0949306
chr1	109595325	109595424	180635	0	+	0.313131	(0.28,0.32]	chr1	19831	31	UTR3	UTR3:EXON_MRNA	GNAI3	ENSG00000065135.12	ENST00000369851.7	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.01002	4.4062850000000005	4.80255	0.0434868	0.0137406	0.162255	0.0949306
chr14	53044087	53044186	5896318	0	-	0.313131	(0.28,0.32]	chr14	560006	75	UTR3	UTR3:EXON_MRNA	DDHD1	ENSG00000100523.16	ENST00000395606.5:ENST00000612692.4:ENST00000673822.2:ENST00000357758.3:ENST00000673827.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	32	2	4.01002	4.4062850000000005	4.80255	0.0434868	0.0137406	0.162255	0.0949306
chr1	16459979	16460078	36289	0	+	0.323232	(0.32,0.35]	chr1	4436	11	UTR3	UTR3:EXON_MRNA	NECAP2	ENSG00000157191.20	ENST00000337132.10:ENST00000443980.6:ENST00000492095.5:ENST00000496239.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	32	2	3.91486	4.40627	4.89768	0.0450361	0.00793135	0.163255	0.076155
chr2	32216727	32216826	730303	0	+	0.292929	(0.28,0.32]	chr2	84226	68	INTRON	INTRON	SLC30A6	ENSG00000152683.14	ENST00000357055.7:ENST00000435660.5:ENST00000282587.9:ENST00000449777.5:ENST00000454324.5:ENST00000379343.6:ENST00000406369.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	91	2	2.84671	4.406264999999999	5.96582	0.00216662	3.08567e-4	0.0434015	0.0161584
chr12	123335500	123335598	5444908	0	-	0.326531	(0.32,0.35]	chr12	521085	9	INTRON	INTRON	SBNO1	ENSG00000139697.14	ENST00000602398.3:ENST00000267176.8:ENST00000420886.6	protein_coding	protein_coding	protein_coding	protein_coding	0	30	2	4.17181	4.406135	4.64046	0.04531	0.00724767	0.149888	0.0756327
chr15	43487289	43487389	6161790	0	-	0.34	(0.32,0.35]	chr15	586788	59	INTRON	INTRON	TP53BP1	ENSG00000067369.14	ENST00000382044.9:ENST00000263801.7:ENST00000382039.7:ENST00000450115.6:ENST00000572085.5:ENST00000413546.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	30	2	4.17181	4.406135	4.64046	0.04531	0.00724767	0.149888	0.0756327
chr15	85110908	85111007	6090239	0	+	0.343434	(0.32,0.35]	chr15	579576	14	INTRON	INTRON	PDE8A	ENSG00000073417.15	ENST00000310298.8:ENST00000557957.5:ENST00000394553.6:ENST00000339708.9:ENST00000478717.5:ENST00000485596.5:ENST00000559742.5:ENST00000560789.5:ENST00000557819.6:ENST00000558543.5:ENST00000557954.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	30	2	4.17181	4.406135	4.64046	0.04531	0.00724767	0.149888	0.0756327
chr17	32357203	32357303	6598051	0	+	0.34	(0.32,0.35]	chr17	641893	49	INTRON	INTRON	ZNF207	ENSG00000010244.19	ENST00000321233.10:ENST00000394673.6:ENST00000394670.9:ENST00000579634.5:ENST00000580759.5:ENST00000342555.10:ENST00000577908.5:ENST00000394679.9:ENST00000582165.1:ENST00000577324.1:ENST00000578918.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	30	2	4.17181	4.406135	4.64046	0.04531	0.00724767	0.149888	0.0756327
chr7	111486351	111486447	3623351	0	-	0.333333	(0.32,0.35]	chr7	337112	23	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000452895.5:ENST00000447215.5:ENST00000492938.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	30	2	4.17181	4.406135	4.64046	0.04531	0.00724767	0.149888	0.0756327
chr7	158883169	158883268	3456400	0	+	0.333333	(0.32,0.35]	chr7	323161	28	INTRON	INTRON	DYNC2I1	ENSG00000126870.16	ENST00000407559.8:ENST00000444851.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	30	2	4.17181	4.406135	4.64046	0.04531	0.00724767	0.149888	0.0756327
chr15	40620139	40620239	6002702	0	+	0.45	(0.44,0.476]	chr15	570900	1	SS3_PROX	SS3_PROX:INTRON	KNL1	ENSG00000137812.21	ENST00000346991.9:ENST00000614337.4:ENST00000399668.7:ENST00000533001.1:ENST00000534204.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	59	2	3.41176	4.40588	5.4	0.00130987	7.02611e-4	0.0333932	0.024224
chr17	46126135	46126235	6784197	0	-	0.54	(0.515,0.57]	chr17	669216	49	INTRON	INTRON	KANSL1	ENSG00000120071.15	ENST00000574590.6:ENST00000572904.6:ENST00000432791.7:ENST00000575318.6:ENST00000638275.1:ENST00000262419.10:ENST00000648792.1:ENST00000639531.1:ENST00000639150.1:ENST00000639853.1:ENST00000571698.2:ENST00000639375.1:ENST00000638269.1:ENST00000576248.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	98	2	2.63844	4.40582	6.1732	4.34654e-4	5.46101e-6	0.0187509	0.00174093
chr10	844385	844476	4541704	0	-	0.494505	(0.476,0.515]	chr10	419257	10	INTRON	INTRON	LARP4B	ENSG00000107929.16	ENST00000688365.1:ENST00000316157.8:ENST00000690516.1:ENST00000689323.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	30	2	3.97201	4.4058150000000005	4.83962	0.030904	0.00480934	0.143385	0.0602209
chr5	137949584	137949684	2729949	0	-	0.51	(0.476,0.515]	chr5	256914	4	SS3_PROX	SS3_PROX:INTRON	FAM13B	ENSG00000031003.11	ENST00000689681.1:ENST00000033079.7:ENST00000425075.6:ENST00000420893.6	protein_coding	protein_coding	protein_coding	protein_coding	0	30	2	3.97201	4.4058150000000005	4.83962	0.030904	0.00480934	0.143385	0.0602209
chr7	607264	607364	3267832	0	+	0.48	(0.476,0.515]	chr7	303432	36	INTRON	INTRON	PRKAR1B-AS1	ENSG00000237181.1	ENST00000429872.1	lncRNA	lncRNA	lncRNA	lncRNA	0	30	2	3.97201	4.4058150000000005	4.83962	0.030904	0.00480934	0.143385	0.0602209
chr12	111877356	111877456	5229088	0	+	0.34	(0.32,0.35]	chr12	495670	58	INTRON	INTRON	MAPKAPK5	ENSG00000089022.14	ENST00000550735.7:ENST00000553053.5:ENST00000551404.6:ENST00000549875.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	31	2	3.94529	4.405755	4.86622	0.0693433	0.00354075	0.184298	0.0546236
chr1	213004632	213004732	634980	0	-	0.5	(0.476,0.515]	chr1	75010	2	SS5_PROX	SS5_PROX:INTRON	ANGEL2	ENSG00000174606.14	ENST00000366962.8:ENST00000360506.6:ENST00000535388.2	protein_coding	protein_coding	protein_coding	protein_coding	3	102	2	2.38129	4.405595	6.4299	0.00474233	8.50404e-7	0.0600445	5.20245e-4
chr5	146501816	146501912	2516069	0	+	0.21875	[0,0.28]	chr5	240386	15	INTRON	INTRON	TCERG1	ENSG00000113649.13	ENST00000296702.9:ENST00000679501.2:ENST00000394421.7:ENST00000549332.1:ENST00000506524.5:ENST00000505285.5:ENST00000504116.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	99	2	2.6958	4.40559	6.11538	0.00456758	4.03843e-4	0.0622215	0.0185763
chr1	207701018	207701118	304514	0	+	0.34	(0.32,0.35]	chr1	35035	1	SS3_PROX	SS3_PROX:INTRON	CR1L	ENSG00000197721.17	ENST00000508064.7:ENST00000530905.1:ENST00000294997.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	30	2	4.27113	4.405505	4.53988	0.0202178	0.0199982	0.120668	0.109913
chr1	226407309	226407409	648376	0	-	0.33	(0.32,0.35]	chr1	76873	1	SS5_PROX	SS5_PROX:INTRON	PARP1	ENSG00000143799.14	ENST00000366794.10:ENST00000677203.1:ENST00000677884.1:ENST00000678560.1:ENST00000677091.1:ENST00000678144.1:ENST00000678781.1:ENST00000676685.1:ENST00000679276.1:ENST00000676709.1:ENST00000366792.3:ENST00000366790.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	30	2	4.27113	4.405505	4.53988	0.0202178	0.0199982	0.120668	0.109913
chr13	52688134	52688234	5506105	0	+	0.35	(0.32,0.35]	chr13	526947	4	UTR3	UTR3:EXON_MRNA	SUGT1	ENSG00000165416.15	ENST00000310528.9:ENST00000609175.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	30	2	4.27113	4.405505	4.53988	0.0202178	0.0199982	0.120668	0.109913
chr16	11883890	11883989	6446073	0	-	0.343434	(0.32,0.35]	chr16	621075	4	INTRON	INTRON	GSPT1	ENSG00000103342.13	ENST00000434724.7:ENST00000439887.6:ENST00000565267.5:ENST00000563468.5:ENST00000420576.6:ENST00000564790.5:ENST00000562794.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	30	2	4.27113	4.405505	4.53988	0.0202178	0.0199982	0.120668	0.109913
chr17	28079349	28079448	6582888	0	+	0.323232	(0.32,0.35]	chr17	639837	174	INTRON	INTRON	NLK	ENSG00000087095.13	ENST00000407008.8:ENST00000496808.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	30	2	4.27113	4.405505	4.53988	0.0202178	0.0199982	0.120668	0.109913
chr19	35741657	35741723	7172535	0	-	0.333333	(0.32,0.35]	chr19	724827	2	SS3_PROX	SS3_PROX:INTRON	IGFLR1	ENSG00000126246.10	ENST00000246532.6:ENST00000588992.5:ENST00000592537.5:ENST00000588018.5:ENST00000589175.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	30	2	4.27113	4.405505	4.53988	0.0202178	0.0199982	0.120668	0.109913
chr2	128170797	128170890	863300	0	+	0.333333	(0.32,0.35]	chr2	96817	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	UGGT1	ENSG00000136731.13	ENST00000259253.11:ENST00000438277.5:ENST00000376723.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	30	2	4.27113	4.405505	4.53988	0.0202178	0.0199982	0.120668	0.109913
chr7	152045110	152045210	3449705	0	+	0.33	(0.32,0.35]	chr7	322435	170	INTRON	INTRON	GALNT11	ENSG00000178234.13	ENST00000430044.7:ENST00000482812.1:ENST00000431668.1:ENST00000446096.5:ENST00000447778.5:ENST00000423337.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	30	2	4.27113	4.405505	4.53988	0.0202178	0.0199982	0.120668	0.109913
chr1	45603931	45604028	93404	0	+	0.319588	(0.28,0.32]	chr1	12592	12	INTRON	INTRON	NASP	ENSG00000132780.17	ENST00000437901.6:ENST00000537798.5:ENST00000437362.6:ENST00000350030.8:ENST00000464190.6:ENST00000527359.5:ENST00000528084.5:ENST00000453748.5:ENST00000525515.5:ENST00000527470.5:ENST00000529333.5:ENST00000531532.5:ENST00000528238.5:ENST00000534101.1:ENST00000470768.5:ENST00000372052.8:ENST00000351223.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	33	2	3.88145	4.40537	4.92929	0.0561985	0.0098607	0.18407	0.0838128
chr14	49657338	49657438	5886189	0	-	0.29	(0.28,0.32]	chr14	558573	11	INTRON	INTRON	POLE2	ENSG00000100479.13	ENST00000216367.10:ENST00000539565.6:ENST00000556584.5:ENST00000554396.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	33	2	3.88145	4.40537	4.92929	0.0561985	0.0098607	0.18407	0.0838128
chr16	74605057	74605157	6525312	0	-	0.33	(0.32,0.35]	chr16	631842	419	INTRON	INTRON	GLG1	ENSG00000090863.12	ENST00000205061.9:ENST00000422840.7:ENST00000447066.6:ENST00000562090.5:ENST00000567951.5:ENST00000627032.2:ENST00000565260.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	70	2	3.07935	4.405094999999999	5.73084	0.00724137	1.07676e-4	0.0729826	0.00878438
chr3	88086702	88086802	1457302	0	+	0.35	(0.32,0.35]	chr3	153169	3	SS5_PROX	SS5_PROX:INTRON	ZNF654	ENSG00000175105.8	ENST00000636215.2:ENST00000473136.4:ENST00000623596.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	70	2	3.07935	4.405094999999999	5.73084	0.00724137	1.07676e-4	0.0729826	0.00878438
chr12	112083714	112083813	5415172	0	-	0.444444	(0.44,0.476]	chr12	517230	22	INTRON	INTRON	NAA25	ENSG00000111300.10	ENST00000261745.9:ENST00000552527.5:ENST00000549711.5:ENST00000551858.1:ENST00000547133.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	63	2	3.17572	4.40455	5.63338	0.00427037	7.86121e-5	0.0573912	0.00738014
chr16	66825385	66825476	6502983	0	-	0.483516	(0.476,0.515]	chr16	629241	1	INTRON	INTRON	NAE1	ENSG00000159593.15	ENST00000359087.8:ENST00000290810.8:ENST00000379463.6:ENST00000394074.6:ENST00000567743.5:ENST00000563253.5:ENST00000563185.6:ENST00000561579.6:ENST00000564040.6:ENST00000569388.5:ENST00000566336.5:ENST00000565535.5:ENST00000569348.5:ENST00000562757.5:ENST00000563419.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	108	2	2.51682	4.40455	6.29228	9.59562e-4	9.26816e-6	0.0284801	0.00235239
chr7	74759151	74759250	3336316	0	+	0.343434	(0.32,0.35]	chr7	310546	4	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GTF2I	ENSG00000263001.8	ENST00000650807.1:ENST00000690345.1:ENST00000573035.6:ENST00000614986.4:ENST00000620879.4:ENST00000621734.4:ENST00000621040.4:ENST00000614048.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	132	2	2.2751	4.40453	6.53396	0.0019529	1.24644e-5	0.0411469	0.00280854
chr1	651728	651828	356465	0	-	0.24	[0,0.28]	chr1	41087	187	INTRON	INTRON	ENSG00000230021	ENSG00000230021.10	ENST00000419394.2:ENST00000634337.2:ENST00000635509.2:ENST00000648019.1:ENST00000440200.5	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	0	32	2	4.1879	4.40437	4.62084	0.0396579	0.0313633	0.161534	0.13151
chr15	28597081	28597181	5987985	0	+	0.28	[0,0.28]	chr15	569248	30	INTRON	INTRON	HERC2P9	ENSG00000206149.11	ENST00000689985.1:ENST00000688694.1:ENST00000529537.2:ENST00000529624.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	32	2	4.1879	4.40437	4.62084	0.0396579	0.0313633	0.161534	0.13151
chr17	19967318	19967418	6741987	0	-	0.27	[0,0.28]	chr17	661936	39	INTRON	INTRON	AKAP10	ENSG00000108599.15	ENST00000225737.11:ENST00000395536.7:ENST00000582611.5:ENST00000572155.1:ENST00000572341.5:ENST00000576896.5:ENST00000571858.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	32	2	4.1879	4.40437	4.62084	0.0396579	0.0313633	0.161534	0.13151
chr19	40625259	40625356	7069781	0	+	0.14433000000000001	[0,0.28]	chr19	706412	8	INTRON	INTRON	LTBP4	ENSG00000090006.18	ENST00000204005.13:ENST00000308370.11:ENST00000396819.8:ENST00000243562.13:ENST00000601032.5:ENST00000599724.5:ENST00000595118.5:ENST00000318809.11:ENST00000597151.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	32	2	4.1879	4.40437	4.62084	0.0396579	0.0313633	0.161534	0.13151
chr2	30587245	30587345	728227	0	+	0.28	[0,0.28]	chr2	84017	187	INTRON	INTRON	LCLAT1	ENSG00000172954.14	ENST00000319406.8:ENST00000379509.8:ENST00000491680.6:ENST00000309052.8:ENST00000478015.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	32	2	4.1879	4.40437	4.62084	0.0396579	0.0313633	0.161534	0.13151
chr2	135648192	135648290	875142	0	+	0.27551	[0,0.28]	chr2	97977	23	INTRON	INTRON	R3HDM1	ENSG00000048991.17	ENST00000683871.1:ENST00000409478.5:ENST00000264160.8:ENST00000410054.5:ENST00000628915.2:ENST00000409606.5:ENST00000443537.2:ENST00000441871.5:ENST00000429703.6:ENST00000425804.1:ENST00000487294.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	32	2	4.1879	4.40437	4.62084	0.0396579	0.0313633	0.161534	0.13151
chr6	39211956	39212056	3090630	0	-	0.46	(0.44,0.476]	chr6	289173	156	INTRON	INTRON	KCNK5	ENSG00000164626.9	ENST00000359534.4	protein_coding	protein_coding	protein_coding	protein_coding	1	59	2	3.50584	4.40437	5.3029	0.00102616	8.66138e-4	0.029231300000000002	0.0266729
chr6	140207568	140207668	2968531	0	+	0.18	[0,0.28]	chr6	279015	585	INTRON	INTRON	ENSG00000288714	ENSG00000288714.1	ENST00000683950.1	lncRNA	lncRNA	lncRNA	lncRNA	0	32	2	4.1879	4.40437	4.62084	0.0396579	0.0313633	0.161534	0.13151
chr16	14637279	14637379	6303422	0	+	0.33	(0.32,0.35]	chr16	602795	34	INTRON	INTRON	BFAR	ENSG00000103429.11	ENST00000563971.5:ENST00000566520.5:ENST00000562442.5:ENST00000562121.1:ENST00000261658.7:ENST00000563313.5:ENST00000570219.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	31	2	4.04364	4.404325	4.76501	0.034181	0.0114287	0.146815	0.0886611
chr1	8720887	8720987	372815	0	-	0.47	(0.44,0.476]	chr1	43545	178	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000656437.1:ENST00000659924.1:ENST00000480342.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	59	2	3.36231	4.404255	5.4462	0.00161678	5.83686e-4	0.0369204	0.0223753
chr12	122097061	122097161	5240045	0	+	0.55	(0.515,0.57]	chr12	497496	174	INTRON	INTRON	MLXIP	ENSG00000175727.14	ENST00000319080.12	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	3.89856	4.40384	4.90912	0.0280943	0.0021669	0.137011	0.0417866
chr12	7100719	7100816	5261579	0	-	0.402062	(0.378,0.408]	chr12	501315	3	INTRON	INTRON	C1RL	ENSG00000139178.12	ENST00000545280.5:ENST00000266542.9:ENST00000544702.5:ENST00000534950.1:ENST00000543933.5:ENST00000537833.6:ENST00000534969.2	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay	1	65	2	3.32016	4.40344	5.48672	0.00268328	1.83012e-4	0.0464781	0.01176
chr7	65057117	65057217	3321563	0	+	0.39	(0.378,0.408]	chr7	308810	182	INTRON	INTRON	CCT6P3	ENSG00000234585.6	ENST00000419314.5:ENST00000426828.5	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript	3	97	2	2.95379	4.40333	5.85287	2.62263e-4	1.39037e-4	0.0143317	0.0107072
chr17	32870008	32870107	6757045	0	-	0.434343	(0.408,0.44]	chr17	664079	71	INTRON	INTRON	MYO1D	ENSG00000176658.17	ENST00000318217.10:ENST00000579584.5:ENST00000583621.1	protein_coding	protein_coding	protein_coding	protein_coding	1	59	2	3.41323	4.403215	5.3932	0.00129989	7.81492e-4	0.0333764	0.0257168
chr16	1371811	1371911	6427538	0	-	0.64	(0.57,1]	chr16	617815	2	SS3_PROX	SS3_PROX:INTRON	UNKL	ENSG00000059145.19	ENST00000389221.9:ENST00000248104.11:ENST00000403703.5:ENST00000674376.1:ENST00000397464.5:ENST00000508903.7:ENST00000402641.6:ENST00000513783.1:ENST00000515195.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	52	2	3.07938	4.402685	5.72599	4.22401e-4	3.45794e-6	0.0183838	0.00131943
chr17	18777180	18777279	6569251	0	+	0.50505	(0.476,0.515]	chr17	638726	16	INTRON	INTRON	FBXW10	ENSG00000171931.13	ENST00000308799.8:ENST00000395665.9:ENST00000574478.1:ENST00000301938.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	59	2	3.49411	4.402345	5.31058	9.23453e-4	9.15544e-4	0.0278396	0.0278392
chr1	15516322	15516421	380674	0	-	0.525253	(0.515,0.57]	chr1	44643	81	INTRON	INTRON	CASP9	ENSG00000132906.18	ENST00000546424.5:ENST00000333868.10:ENST00000348549.9:ENST00000400777.7:ENST00000375890.8:ENST00000474305.2:ENST00000447522.5:ENST00000440484.1:ENST00000546969.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	55	2	3.19178	4.40216	5.61254	0.00289534	1.10757e-4	0.0494641	0.00945003
chr5	53575527	53575627	2352639	0	+	0.41	(0.408,0.44]	chr5	226995	14	INTRON	INTRON	NDUFS4	ENSG00000164258.12	ENST00000507026.5:ENST00000502423.5:ENST00000296684.10:ENST00000506974.5:ENST00000506765.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	83	2	3.50819	4.4021550000000005	5.29612	0.00113523	5.7683e-5	0.0307488	0.00620725
chr21	43943033	43943132	7414572	0	+	0.525253	(0.515,0.57]	chr21	755706	172	INTRON	INTRON	AGPAT3	ENSG00000160216.21	ENST00000291572.13:ENST00000448287.5:ENST00000398061.5:ENST00000327505.6:ENST00000445582.5:ENST00000398063.6	protein_coding	protein_coding	protein_coding	protein_coding	1	57	2	3.49496	4.402085	5.30921	9.61701e-4	1.98811e-4	0.0282401	0.0122787
chr1	231528926	231529002	337603	0	+	0.592105	(0.57,1]	chr1	39308	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TSNAX	ENSG00000116918.15	ENST00000413309.3:ENST00000602825.5:ENST00000366639.9	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	22	2	4.31277	4.4019200000000005	4.49107	0.00346264	0.00220544	0.0539802	0.0417893
chr14	104794230	104794329	5972845	0	-	0.686869	(0.57,1]	chr14	567795	17	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SS3_PROX:SS5_PROX:INTRON	AKT1	ENSG00000142208.18	ENST00000349310.7:ENST00000407796.7:ENST00000649815.2:ENST00000402615.6:ENST00000683722.1:ENST00000554826.2:ENST00000553797.2:ENST00000610370.2:ENST00000682269.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	22	2	4.31277	4.4019200000000005	4.49107	0.00346264	0.00220544	0.0539802	0.0417893
chr16	89775241	89775341	6544379	0	-	0.58	(0.57,1]	chr16	634504	1	SS5_PROX	SS5_PROX:INTRON	FANCA	ENSG00000187741.16	ENST00000561667.2:ENST00000389301.8:ENST00000568369.6:ENST00000564475.6:ENST00000696275.1:ENST00000696287.1:ENST00000696286.1:ENST00000696274.1:ENST00000567510.2:ENST00000696291.1:ENST00000696276.1:ENST00000567205.2:ENST00000567284.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	22	2	4.31277	4.4019200000000005	4.49107	0.00346264	0.00220544	0.0539802	0.0417893
chr17	82647773	82647873	6853687	0	-	0.58	(0.57,1]	chr17	679391	1	SS5_PROX	SS5_PROX:INTRON	WDR45B	ENSG00000141580.16	ENST00000392325.9:ENST00000572583.5:ENST00000573616.5:ENST00000571817.5:ENST00000574828.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	22	2	4.31277	4.4019200000000005	4.49107	0.00346264	0.00220544	0.0539802	0.0417893
chr3	141423021	141423121	1524370	0	+	0.58	(0.57,1]	chr3	158789	174	INTRON	INTRON	ZBTB38	ENSG00000177311.12	ENST00000509842.5:ENST00000321464.7:ENST00000507722.5:ENST00000636289.1:ENST00000503809.5:ENST00000513258.5:ENST00000509883.5:ENST00000514251.5:ENST00000637056.1:ENST00000510338.5:ENST00000504673.5:ENST00000513570.1	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	4.31277	4.4019200000000005	4.49107	0.00346264	0.00220544	0.0539802	0.0417893
chr8	119824594	119824694	4039985	0	-	0.61	(0.57,1]	chr8	368406	47	INTRON	INTRON	TAF2	ENSG00000064313.13	ENST00000378164.7:ENST00000685503.1:ENST00000690808.1:ENST00000692707.1:ENST00000685202.1:ENST00000688645.1:ENST00000685684.1:ENST00000689399.1:ENST00000685876.1:ENST00000689341.1:ENST00000691057.1:ENST00000686098.1:ENST00000690922.1:ENST00000685663.1:ENST00000692518.1:ENST00000688037.1:ENST00000691237.1:ENST00000684862.1:ENST00000685755.1:ENST00000691880.1:ENST00000523904.2:ENST00000689919.1:ENST00000685824.1:ENST00000685993.1:ENST00000692829.1:ENST00000692916.1:ENST00000686879.1:ENST00000685235.1:ENST00000690144.1:ENST00000689164.1:ENST00000691847.1:ENST00000688215.1:ENST00000690031.1:ENST00000689867.1:ENST00000689873.1:ENST00000521007.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	22	2	4.31277	4.4019200000000005	4.49107	0.00346264	0.00220544	0.0539802	0.0417893
chr9	37239804	37239903	4118855	0	+	0.30303	(0.28,0.32]	chr9	375389	529	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000461038.5:ENST00000488607.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	69	2	3.65016	4.40187	5.15358	0.0052282	6.39301e-4	0.0633615	0.0228666
chr11	44131735	44131835	4781757	0	+	0.58	(0.57,1]	chr11	442175	12	INTRON	INTRON	EXT2	ENSG00000151348.16	ENST00000682993.1:ENST00000684533.1:ENST00000683000.1:ENST00000533608.7:ENST00000395673.8:ENST00000684039.1:ENST00000682815.1:ENST00000682359.1:ENST00000358681.8:ENST00000683870.1:ENST00000684124.1:ENST00000343631.4:ENST00000682711.1:ENST00000683881.1:ENST00000682947.1:ENST00000683299.1:ENST00000525559.1:ENST00000534048.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	43	2	3.02967	4.40183	5.77399	0.00471306	2.49664e-6	0.0631419	0.00111119
chr1	61685802	61685900	467970	0	-	0.418367	(0.408,0.44]	chr1	56542	19	INTRON	INTRON	TM2D1	ENSG00000162604.12	ENST00000606498.5:ENST00000294613.9:ENST00000371180.6:ENST00000488206.5:ENST00000472989.5:ENST00000488410.5:ENST00000468586.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	59	2	3.50731	4.401715	5.29612	0.00113523	8.5918e-4	0.0307488	0.0265787
chr1	9554504	9554604	17283	0	+	0.52	(0.515,0.57]	chr1	1576	3	INTRON	INTRON	SLC25A33	ENSG00000171612.7	ENST00000302692.7	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.04086	4.40165	4.76244	0.0197045	0.00362147	0.120063	0.0533855
chr1	65626729	65626828	139275	0	+	0.565657	(0.515,0.57]	chr1	15603	6	INTRON	INTRON	LEPR	ENSG00000116678.20	ENST00000371060.7:ENST00000371059.7:ENST00000349533.11:ENST00000616738.4	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.04086	4.40165	4.76244	0.0197045	0.00362147	0.120063	0.0533855
chr1	161016309	161016409	573340	0	-	0.55	(0.515,0.57]	chr1	69501	133	INTRON	INTRON	F11R:ENSG00000270149	ENSG00000158769.18:ENSG00000270149.5	ENST00000621309.4:ENST00000368026.11:ENST00000289779.7:ENST00000537746.1:ENST00000470694.1:ENST00000335772.3:ENST00000602966.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	28	2	4.04086	4.40165	4.76244	0.0197045	0.00362147	0.120063	0.0533855
chr16	2444595	2444694	6278075	0	+	0.545455	(0.515,0.57]	chr16	600401	4	INTRON	INTRON	CCNF	ENSG00000162063.13	ENST00000293968.11:ENST00000397066.9:ENST00000564236.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	28	2	4.04086	4.40165	4.76244	0.0197045	0.00362147	0.120063	0.0533855
chr19	12952275	12952363	7022615	0	+	0.568182	(0.515,0.57]	chr19	698347	2	SS3_PROX	SS3_PROX:INTRON	RAD23A	ENSG00000179262.10	ENST00000591499.5:ENST00000651137.1:ENST00000586534.6:ENST00000316856.7:ENST00000592268.5:ENST00000593114.5:ENST00000586375.1:ENST00000590881.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	28	2	4.04086	4.40165	4.76244	0.0197045	0.00362147	0.120063	0.0533855
chr21	39262463	39262562	7465015	0	-	0.535354	(0.515,0.57]	chr21	760495	34	INTRON	INTRON	BRWD1	ENSG00000185658.14	ENST00000333229.6:ENST00000342449.8:ENST00000446924.5:ENST00000380800.7:ENST00000430093.5:ENST00000445245.5:ENST00000445668.5:ENST00000412604.1:ENST00000455867.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	28	2	4.04086	4.40165	4.76244	0.0197045	0.00362147	0.120063	0.0533855
chr3	23854478	23854578	1388215	0	+	0.52	(0.515,0.57]	chr3	145385	426	INTRON	INTRON	UBE2E1	ENSG00000170142.12	ENST00000306627.8:ENST00000346855.7:ENST00000495141.5:ENST00000442670.5:ENST00000424381.5:ENST00000467766.5:ENST00000475680.5:ENST00000452012.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	28	2	4.04086	4.40165	4.76244	0.0197045	0.00362147	0.120063	0.0533855
chr20	26144589	26144689	7252060	0	+	0.36	(0.35,0.378]	chr20	736500	80	INTRON	INTRON	ENSG00000287211	ENSG00000287211.1	ENST00000657722.1	lncRNA	lncRNA	lncRNA	lncRNA	1	62	2	3.54186	4.401555	5.26125	0.00191117	8.14353e-4	0.03947	0.02604
chr1	110375977	110376076	182712	0	+	0.484848	(0.476,0.515]	chr1	20259	31	INTRON	INTRON	LAMTOR5-AS1	ENSG00000224699.10	ENST00000626572.2	lncRNA	lncRNA	lncRNA	lncRNA	0	31	2	3.83018	4.401355	4.97253	0.0423385	0.00311573	0.161744	0.0498063
chr11	46749773	46749873	4947744	0	-	0.5	(0.476,0.515]	chr11	463627	1	SS5_PROX	SS5_PROX:INTRON	CKAP5	ENSG00000175216.15	ENST00000529230.6:ENST00000312055.9:ENST00000354558.7:ENST00000533413.5:ENST00000525896.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	31	2	3.83018	4.401355	4.97253	0.0423385	0.00311573	0.161744	0.0498063
chr7	107090577	107090676	3377626	0	+	0.50505	(0.476,0.515]	chr7	316248	199	INTRON	INTRON	PRKAR2B	ENSG00000005249.13	ENST00000265717.5:ENST00000393613.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	31	2	3.83018	4.401355	4.97253	0.0423385	0.00311573	0.161744	0.0498063
chrX	41086708	41086808	7644074	0	+	0.49	(0.476,0.515]	chrX	782230	2	INTRON	INTRON	USP9X	ENSG00000124486.14	ENST00000324545.9:ENST00000378308.7	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	3.83018	4.401355	4.97253	0.0423385	0.00311573	0.161744	0.0498063
chr10	72697741	72697840	4450141	0	+	0.353535	(0.35,0.378]	chr10	410727	43	INTRON	INTRON	MCU	ENSG00000156026.15	ENST00000373053.8:ENST00000357157.10:ENST00000604679.5:ENST00000604372.5:ENST00000603649.5:ENST00000605597.5:ENST00000536019.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	62	2	3.26794	4.401325	5.53471	0.00257067	6.96925e-4	0.0466761	0.024224
chr8	6709642	6709742	3695014	0	+	0.4	(0.378,0.408]	chr8	342827	1	SS5_PROX	SS5_PROX:INTRON	AGPAT5	ENSG00000155189.12	ENST00000285518.11:ENST00000523234.5:ENST00000518327.1:ENST00000523586.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	134	2	2.12424	4.401295	6.67835	0.00224944	1.99347e-6	0.0435778	9.6763e-4
chr13	36964882	36964981	5574975	0	-	0.414141	(0.408,0.44]	chr13	532810	10	EXON_MRNA	EXON_MRNA:INTRON	ALG5	ENSG00000120697.10	ENST00000496689.2:ENST00000239891.4:ENST00000679673.1:ENST00000681893.1:ENST00000681016.1:ENST00000680488.1:ENST00000680949.1:ENST00000443765.6:ENST00000681043.1:ENST00000681208.1:ENST00000681763.1:ENST00000680795.1:ENST00000680671.1:ENST00000680012.1:ENST00000681151.1:ENST00000681553.1:ENST00000679760.1:ENST00000681214.1:ENST00000679572.1:ENST00000679837.1:ENST00000460230.1:ENST00000681581.1:ENST00000680127.1:ENST00000681110.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	30	2	3.97679	4.401045	4.8253	0.0299485	0.0056738	0.142135	0.0653997
chr8	47729704	47729791	3751948	0	+	0.425287	(0.408,0.44]	chr8	348924	1	SS5_PROX	SS5_PROX:INTRON	SPIDR	ENSG00000164808.17	ENST00000541342.2:ENST00000518074.5:ENST00000297423.9:ENST00000524126.5:ENST00000522117.5:ENST00000521214.5:ENST00000519401.5:ENST00000519141.5:ENST00000517693.5:ENST00000519362.5:ENST00000517619.5:ENST00000518060.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	30	2	3.97679	4.401045	4.8253	0.0299485	0.0056738	0.142135	0.0653997
chr1	32377141	32377241	415012	0	-	0.48	(0.476,0.515]	chr1	50052	4	SS3_PROX	SS3_PROX:INTRON	BSDC1	ENSG00000160058.19	ENST00000455895.7:ENST00000444377.5:ENST00000341071.11:ENST00000526031.5:ENST00000419121.6:ENST00000446293.6:ENST00000373520.8:ENST00000527513.5:ENST00000527163.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	130	2	4.28154	4.400805	4.52007	1.50554e-5	6.81864e-6	0.00292449	0.00195999
chr12	112423717	112423816	5229846	0	+	0.373737	(0.35,0.378]	chr12	495837	42	INTRON	INTRON	PTPN11	ENSG00000179295.19	ENST00000688597.1:ENST00000692624.1:ENST00000685487.1:ENST00000690210.1:ENST00000639857.2:ENST00000392597.5:ENST00000687906.1:ENST00000351677.7:ENST00000635625.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	63	2	3.10863	4.400259999999999	5.69189	0.00470896	3.71413e-4	0.0631419	0.0178698
chr1	32763940	32764039	66424	0	+	0.535354	(0.515,0.57]	chr1	8486	94	INTRON	INTRON	KIAA1522	ENSG00000162522.11	ENST00000401073.7:ENST00000468130.1:ENST00000373481.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	27	2	4.20381	4.400055	4.5963	0.0189208	0.00370287	0.108861	0.0561162
chr1	248817771	248817868	685229	0	-	0.525773	(0.515,0.57]	chr1	80321	5	INTRON	INTRON	SH3BP5L	ENSG00000175137.11	ENST00000366472.6:ENST00000475978.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	27	2	4.20381	4.400055	4.5963	0.0189208	0.00370287	0.108861	0.0561162
chr17	542790	542889	6696801	0	-	0.535354	(0.515,0.57]	chr17	655207	37	INTRON	INTRON	VPS53	ENSG00000141252.21	ENST00000437048.7:ENST00000681160.1:ENST00000680465.1:ENST00000681661.1:ENST00000680872.1:ENST00000681050.1:ENST00000681317.1:ENST00000681943.1:ENST00000681510.1:ENST00000680641.1:ENST00000681946.1:ENST00000681600.1:ENST00000576149.5:ENST00000681917.1:ENST00000681103.1:ENST00000681858.1:ENST00000681096.1:ENST00000573028.5:ENST00000571805.6:ENST00000681478.1:ENST00000680128.1:ENST00000291074.10:ENST00000679817.1:ENST00000389040.9:ENST00000401468.7:ENST00000680704.1:ENST00000572334.7:ENST00000680069.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	27	2	4.20381	4.400055	4.5963	0.0189208	0.00370287	0.108861	0.0561162
chr6	30601358	30601453	3077181	0	-	0.557895	(0.515,0.57]	chr6	286213	11	UTR3	UTR3:EXON_MRNA	PPP1R10	ENSG00000204569.10	ENST00000376511.7	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.20381	4.400055	4.5963	0.0189208	0.00370287	0.108861	0.0561162
chr16	1783691	1783776	6276259	0	+	0.6	(0.57,1]	chr16	599727	2	SS3_PROX	SS3_PROX:SS5_PROX:INTRON	NUBP2	ENSG00000095906.17	ENST00000567700.5:ENST00000568834.5:ENST00000566447.5:ENST00000566090.5:ENST00000262302.14:ENST00000563136.5:ENST00000565987.5:ENST00000568287.5:ENST00000565603.5:ENST00000569898.5:ENST00000565134.5:ENST00000564227.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	41	2	3.75165	4.399875	5.0481	1.54884e-4	1.32594e-4	0.0113252	0.00992554
chr1	187155218	187155318	278864	0	+	0.46	(0.44,0.476]	chr1	32518	619	INTRON	INTRON	LINC01036	ENSG00000230426.5	ENST00000643891.1:ENST00000609113.2:ENST00000657376.1:ENST00000670356.1:ENST00000645691.1:ENST00000458683.1	lncRNA	lncRNA	lncRNA	lncRNA	0	31	2	3.8344	4.399655	4.96491	0.041276	0.0034249	0.161534	0.0517761
chr10	75102361	75102461	4653279	0	-	0.57	(0.515,0.57]	chr10	428539	4	SS3_PROX	SS3_PROX:INTRON	DUSP13	ENSG00000079393.21	ENST00000491677.6:ENST00000372702.7:ENST00000308475.10:ENST00000479884.6:ENST00000607131.5:ENST00000394707.7:ENST00000494588.2:ENST00000372700.7:ENST00000607487.5:ENST00000607009.1:ENST00000473072.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	27	2	4.28921	4.399604999999999	4.51	0.00990051	0.00809449	0.0877296	0.0766625
chr12	108130984	108131078	5219061	0	+	0.521277	(0.515,0.57]	chr12	494064	7	INTRON	INTRON	WSCD2	ENSG00000075035.10	ENST00000547525.6:ENST00000552195.5:ENST00000550529.5:ENST00000551106.1:ENST00000551638.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	27	2	4.28921	4.399604999999999	4.51	0.00990051	0.00809449	0.0877296	0.0766625
chr19	5587600	5587700	7123981	0	-	0.52	(0.515,0.57]	chr19	716943	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SAFB2	ENSG00000130254.12	ENST00000252542.9:ENST00000587802.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	27	2	4.28921	4.399604999999999	4.51	0.00990051	0.00809449	0.0877296	0.0766625
chr20	35806898	35806998	7263235	0	+	0.54	(0.515,0.57]	chr20	738073	49	INTRON	INTRON	PHF20	ENSG00000025293.17	ENST00000461122.5:ENST00000374012.8:ENST00000452270.5:ENST00000374000.8:ENST00000339089.10:ENST00000481202.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	27	2	4.28921	4.399604999999999	4.51	0.00990051	0.00809449	0.0877296	0.0766625
chr21	43736453	43736553	7413327	0	+	0.54	(0.515,0.57]	chr21	755523	1	SS3_PROX	SS3_PROX:INTRON	PDXK	ENSG00000160209.19	ENST00000398081.5:ENST00000468090.5:ENST00000291565.9:ENST00000398085.7:ENST00000470029.5:ENST00000498040.5:ENST00000327574.4:ENST00000472777.5:ENST00000476313.5:ENST00000481512.5:ENST00000621478.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	27	2	4.28921	4.399604999999999	4.51	0.00990051	0.00809449	0.0877296	0.0766625
chr22	40068477	40068577	7517084	0	+	0.52	(0.515,0.57]	chr22	768084	225	INTRON	INTRON	TNRC6B	ENSG00000100354.21	ENST00000301923.13:ENST00000441751.5:ENST00000402203.5	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.28921	4.399604999999999	4.51	0.00990051	0.00809449	0.0877296	0.0766625
chr3	133583701	133583801	1509593	0	+	0.52	(0.515,0.57]	chr3	157876	3	SS3_PROX	SS3_PROX:INTRON	CDV3	ENSG00000091527.17	ENST00000688838.1:ENST00000264993.8:ENST00000431519.6:ENST00000503932.6:ENST00000508481.5:ENST00000420115.6:ENST00000504867.5:ENST00000511392.5:ENST00000507408.5:ENST00000515421.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	27	2	4.28921	4.399604999999999	4.51	0.00990051	0.00809449	0.0877296	0.0766625
chr18	804824	804923	6940632	0	-	0.494949	(0.476,0.515]	chr18	686527	68	INTRON	INTRON	YES1	ENSG00000176105.14	ENST00000584307.5:ENST00000314574.5:ENST00000577611.1:ENST00000581960.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	116	2	2.55236	4.3995	6.24664	0.00104106	2.70752e-6	0.0293739	0.00105261
chr1	11020028	11020128	24636	0	+	0.51	(0.476,0.515]	chr1	2594	2	SS3_PROX	SS3_PROX:INTRON	TARDBP	ENSG00000120948.19	ENST00000473118.5:ENST00000639083.1:ENST00000639599.1:ENST00000629725.2:ENST00000439080.6:ENST00000240185.8:ENST00000472476.5:ENST00000476201.5:ENST00000614757.4:ENST00000621715.4:ENST00000473869.5:ENST00000315091.7:ENST00000616545.4:ENST00000621790.4:ENST00000649624.1:ENST00000622057.4:ENST00000617172.4:ENST00000611963.4:ENST00000619555.4:ENST00000620632.4:ENST00000610369.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	60	2	3.13389	4.39947	5.66505	0.00405473	2.08835e-4	0.0578376	0.0131276
chr5	65518933	65519033	2633839	0	-	0.29	(0.28,0.32]	chr5	250138	3	SS3_PROX	SS3_PROX:INTRON	CENPK	ENSG00000123219.13	ENST00000514814.5:ENST00000396679.6:ENST00000242872.7:ENST00000508421.5:ENST00000510693.5:ENST00000506282.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	68	2	3.1268	4.399185	5.67157	0.00508956	9.48957e-4	0.0646039	0.0281755
chr1	15696288	15696387	34132	0	+	0.40404	(0.378,0.408]	chr1	4144	113	INTRON	INTRON	PLEKHM2	ENSG00000116786.13	ENST00000375799.8:ENST00000375793.2:ENST00000462455.1:ENST00000642363.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	29	2	4.10661	4.399150000000001	4.69169	0.0399023	0.00432302	0.143072	0.0599409
chr1	246310196	246310296	678737	0	-	0.38	(0.378,0.408]	chr1	79737	43	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000453676.5:ENST00000462422.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	29	2	4.10661	4.399150000000001	4.69169	0.0399023	0.00432302	0.143072	0.0599409
chr2	176309944	176310043	925623	0	+	0.383838	(0.378,0.408]	chr2	101688	52	INTRON	INTRON	MTX2	ENSG00000128654.14	ENST00000420864.5:ENST00000249442.11:ENST00000423461.6:ENST00000443241.5:ENST00000452865.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	29	2	4.10661	4.399150000000001	4.69169	0.0399023	0.00432302	0.143072	0.0599409
chr4	47870657	47870756	2134868	0	-	0.393939	(0.378,0.408]	chr4	210399	74	INTRON	INTRON	NFXL1	ENSG00000170448.12	ENST00000329043.7:ENST00000464756.6:ENST00000381538.7:ENST00000507489.2:ENST00000502448.5:ENST00000507131.5:ENST00000508115.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	29	2	4.10661	4.399150000000001	4.69169	0.0399023	0.00432302	0.143072	0.0599409
chr2	28776350	28776450	724895	0	+	0.51	(0.476,0.515]	chr2	83721	1	SS3_PROX	SS3_PROX:INTRON	PPP1CB	ENSG00000213639.10	ENST00000455580.5:ENST00000420282.5:ENST00000441461.5:ENST00000427786.1:ENST00000358506.6:ENST00000296122.10:ENST00000395366.3:ENST00000464273.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	63	2	3.9575	4.39856	4.83962	0.00480934	9.49972e-5	0.0602209	0.00818267
chr1	21088037	21088137	392738	0	-	0.38	(0.378,0.408]	chr1	46825	144	INTRON	INTRON	EIF4G3	ENSG00000075151.24	ENST00000374935.7:ENST00000602326.6:ENST00000685872.1:ENST00000686579.1:ENST00000688741.1:ENST00000684485.1:ENST00000400422.6:ENST00000634879.2:ENST00000693470.1:ENST00000685814.1:ENST00000356916.7:ENST00000682284.1:ENST00000438975.5:ENST00000411888.5:ENST00000463775.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	29	2	4.21226	4.398265	4.58427	0.0177403	0.0128325	0.11319	0.0926667
chr1	247069303	247069403	683218	0	-	0.38	(0.378,0.408]	chr1	80116	294	INTRON	INTRON	ZNF670-ZNF695:ZNF670	ENSG00000135747.11:ENSG00000277462.2	ENST00000465049.6:ENST00000474541.1:ENST00000366503.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	29	2	4.21226	4.398265	4.58427	0.0177403	0.0128325	0.11319	0.0926667
chr12	120829238	120829338	5435155	0	-	0.38	(0.378,0.408]	chr12	519659	179	INTRON	INTRON	SPPL3	ENSG00000157837.16	ENST00000353487.7:ENST00000536996.5:ENST00000543608.5:ENST00000543854.5:ENST00000543181.5	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	4.21226	4.398265	4.58427	0.0177403	0.0128325	0.11319	0.0926667
chr2	169907763	169907863	908956	0	+	0.4	(0.378,0.408]	chr2	100276	12	INTRON	INTRON	UBR3	ENSG00000144357.18	ENST00000272793.11	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	4.21226	4.398265	4.58427	0.0177403	0.0128325	0.11319	0.0926667
chr5	103160622	103160721	2440455	0	+	0.383838	(0.378,0.408]	chr5	234268	9	INTRON	INTRON	PPIP5K2	ENSG00000145725.20	ENST00000321521.13:ENST00000358359.8:ENST00000613674.4:ENST00000414217.5:ENST00000627916.2	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	4.21226	4.398265	4.58427	0.0177403	0.0128325	0.11319	0.0926667
chr6	97275655	97275755	3164700	0	-	0.38	(0.378,0.408]	chr6	295147	22	INTRON	INTRON	MMS22L	ENSG00000146263.12	ENST00000683635.1:ENST00000275053.8:ENST00000369251.6:ENST00000509383.5:ENST00000510018.5:ENST00000508976.5:ENST00000508820.1:ENST00000496119.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	29	2	4.21226	4.398265	4.58427	0.0177403	0.0128325	0.11319	0.0926667
chr10	30325535	30325632	4587403	0	-	0.505155	(0.476,0.515]	chr10	422963	26	INTRON	INTRON	MTPAP	ENSG00000107951.15	ENST00000263063.9:ENST00000488290.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	29	2	4.01777	4.398165	4.77856	0.0411361	0.00305743	0.1451	0.0509893
chr12	122098561	122098661	5240060	0	+	0.48	(0.476,0.515]	chr12	497496	189	INTRON	INTRON	MLXIP	ENSG00000175727.14	ENST00000319080.12	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	4.01777	4.398165	4.77856	0.0411361	0.00305743	0.1451	0.0509893
chr16	50025519	50025584	6346968	0	+	0.492308	(0.476,0.515]	chr16	609165	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CNEP1R1	ENSG00000205423.12	ENST00000458059.7:ENST00000427478.7:ENST00000389134.9:ENST00000567712.1:ENST00000568890.5:ENST00000569647.1:ENST00000566482.5:ENST00000562576.5:ENST00000565457.5:ENST00000565556.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	29	2	4.01777	4.398165	4.77856	0.0411361	0.00305743	0.1451	0.0509893
chr1	61096676	61096776	127534	0	+	0.51	(0.476,0.515]	chr1	14770	81	EXON_MRNA	EXON_MRNA:INTRON	NFIA	ENSG00000162599.17	ENST00000371191.5:ENST00000664495.1:ENST00000476646.5:ENST00000407417.7:ENST00000479364.1:ENST00000371189.8:ENST00000670151.1:ENST00000664149.1:ENST00000662015.1:ENST00000403491.8:ENST00000371187.7:ENST00000485903.6:ENST00000371185.6:ENST00000371184.6:ENST00000603233.2:ENST00000496712.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	62	2	2.94692	4.39806	5.8492	0.00794331	8.94204e-5	0.0797304	0.00844245
chr12	4301592	4301691	5067694	0	+	0.323232	(0.32,0.35]	chr12	478308	17	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	CCND2	ENSG00000118971.9	ENST00000676411.1:ENST00000676279.1:ENST00000261254.8:ENST00000675880.1:ENST00000675468.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	86	2	2.85974	4.39804	5.93634	0.00186579	2.02056e-4	0.0399675	0.0129814
chr7	119717255	119717355	3628510	0	-	0.25	[0,0.28]	chr7	337319	119	INTRON	INTRON	LINC02476	ENSG00000225546.6	ENST00000660268.1:ENST00000431071.5	lncRNA	lncRNA	lncRNA	lncRNA	1	80	2	3.15102	4.39783	5.64464	0.00767596	5.16173e-4	0.0753665	0.0203753
chr1	10481093	10481193	23037	0	+	0.37	(0.35,0.378]	chr1	2497	57	INTRON	INTRON	PEX14	ENSG00000142655.13	ENST00000472851.1:ENST00000356607.9:ENST00000491661.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	29	2	4.29839	4.397325	4.49626	0.0294717	0.00917582	0.128055	0.0855292
chr1	37580442	37580542	424421	0	-	0.37	(0.35,0.378]	chr1	51337	35	INTRON	INTRON	GNL2	ENSG00000134697.13	ENST00000373062.8:ENST00000538069.2:ENST00000469191.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	29	2	4.29839	4.397325	4.49626	0.0294717	0.00917582	0.128055	0.0855292
chr11	14512022	14512117	4918414	0	-	0.357895	(0.35,0.378]	chr11	460995	7	INTRON	INTRON	PSMA1	ENSG00000129084.18	ENST00000396394.7:ENST00000530457.5:ENST00000528307.5:ENST00000418988.2:ENST00000527632.1:ENST00000531023.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	29	2	4.29839	4.397325	4.49626	0.0294717	0.00917582	0.128055	0.0855292
chr12	45901559	45901659	5124457	0	+	0.36	(0.35,0.378]	chr12	483398	75	INTRON	INTRON	ARID2	ENSG00000189079.17	ENST00000334344.11:ENST00000479608.5:ENST00000444670.5:ENST00000457135.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	29	2	4.29839	4.397325	4.49626	0.0294717	0.00917582	0.128055	0.0855292
chr16	87346384	87346480	6537452	0	-	0.354167	(0.35,0.378]	chr16	633408	23	INTRON	INTRON	FBXO31	ENSG00000103264.18	ENST00000311635.12:ENST00000565593.1:ENST00000618298.6:ENST00000636077.1:ENST00000561664.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	29	2	4.29839	4.397325	4.49626	0.0294717	0.00917582	0.128055	0.0855292
chr19	19432273	19432372	7035613	0	+	0.373737	(0.35,0.378]	chr19	701439	39	INTRON	INTRON	GATAD2A	ENSG00000167491.18	ENST00000494516.6:ENST00000360315.7:ENST00000609040.5:ENST00000417582.6:ENST00000683918.1:ENST00000448576.6:ENST00000432704.5:ENST00000404158.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	29	2	4.29839	4.397325	4.49626	0.0294717	0.00917582	0.128055	0.0855292
chr6	35029939	35030039	2850690	0	+	0.36	(0.35,0.378]	chr6	269284	115	INTRON	INTRON	ANKS1A	ENSG00000064999.15	ENST00000360359.5:ENST00000649117.1	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	4.29839	4.397325	4.49626	0.0294717	0.00917582	0.128055	0.0855292
chr9	5775786	5775882	4098799	0	+	0.354167	(0.35,0.378]	chr9	373516	17	UTR3	UTR3:EXON_MRNA	RIC1	ENSG00000107036.12	ENST00000414202.7:ENST00000418622.7	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	4.29839	4.397325	4.49626	0.0294717	0.00917582	0.128055	0.0855292
chr14	58320597	58320697	5731420	0	+	0.5	(0.476,0.515]	chr14	544174	14	INTRON	INTRON	ARID4A	ENSG00000032219.19	ENST00000348476.7:ENST00000355431.8:ENST00000395168.7:ENST00000445108.5:ENST00000431317.6	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	4.10113	4.397165	4.6932	0.0226984	0.00753088	0.124921	0.074841
chr14	74833386	74833484	5789503	0	+	0.5	(0.476,0.515]	chr14	548529	37	INTRON	INTRON	YLPM1	ENSG00000119596.18	ENST00000325680.12:ENST00000552421.5:ENST00000549293.5:ENST00000554107.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	29	2	4.10113	4.397165	4.6932	0.0226984	0.00753088	0.124921	0.074841
chr15	89117021	89117120	6094858	0	+	0.494949	(0.476,0.515]	chr15	580003	1	INTRON	INTRON	ABHD2	ENSG00000140526.18	ENST00000569411.5:ENST00000565066.5:ENST00000565973.5:ENST00000352732.10:ENST00000562073.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	29	2	4.10113	4.397165	4.6932	0.0226984	0.00753088	0.124921	0.074841
chr19	53448160	53448255	7097275	0	+	0.494737	(0.476,0.515]	chr19	711602	5	INTRON	INTRON	ZNF761	ENSG00000160336.17	ENST00000651864.1:ENST00000684525.1:ENST00000610928.4:ENST00000432094.6:ENST00000613950.1	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	4.10113	4.397165	4.6932	0.0226984	0.00753088	0.124921	0.074841
chr20	1184194	1184292	7305111	0	-	0.479592	(0.476,0.515]	chr20	743661	5	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TMEM74B	ENSG00000125895.6	ENST00000381894.3:ENST00000429036.2:ENST00000481747.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	29	2	4.10113	4.397165	4.6932	0.0226984	0.00753088	0.124921	0.074841
chr6	89790801	89790901	3161744	0	-	0.48	(0.476,0.515]	chr6	294865	4	SS3_PROX	SS3_PROX:INTRON	MDN1	ENSG00000112159.12	ENST00000369393.8:ENST00000629399.2:ENST00000439638.1	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	4.10113	4.397165	4.6932	0.0226984	0.00753088	0.124921	0.074841
chr8	31131764	31131864	3728936	0	+	0.49	(0.476,0.515]	chr8	346650	64	INTRON	INTRON	WRN	ENSG00000165392.11	ENST00000650667.1:ENST00000298139.7:ENST00000521620.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	29	2	4.10113	4.397165	4.6932	0.0226984	0.00753088	0.124921	0.074841
chrX	110148768	110148868	7701501	0	+	0.5	(0.476,0.515]	chrX	788157	35	INTRON	INTRON	TMEM164	ENSG00000157600.12	ENST00000372072.7:ENST00000372073.5:ENST00000372068.7:ENST00000288381.4:ENST00000461715.1:ENST00000464177.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	29	2	4.10113	4.397165	4.6932	0.0226984	0.00753088	0.124921	0.074841
chr6	34366767	34366867	3084515	0	-	0.36	(0.35,0.378]	chr6	288633	244	INTRON	INTRON	NUDT3:RPS10-NUDT3	ENSG00000272325.2:ENSG00000270800.3	ENST00000607016.2:ENST00000639725.1:ENST00000639877.1:ENST00000605528.2	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	4.39303	4.397155	4.40128	0.0237246	0.0120289	0.118716	0.0962115
chr6	157390162	157390262	3011632	0	+	0.37	(0.35,0.378]	chr6	281268	75	INTRON	INTRON	ZDHHC14	ENSG00000175048.17	ENST00000414563.6:ENST00000359775.10	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	4.39303	4.397155	4.40128	0.0237246	0.0120289	0.118716	0.0962115
chr8	129870874	129870974	4062461	0	-	0.36	(0.35,0.378]	chr8	369775	1	SS5_PROX	SS5_PROX:INTRON	CYRIB	ENSG00000153310.21	ENST00000694912.1:ENST00000519824.6:ENST00000523288.5:ENST00000519110.5:ENST00000401979.6:ENST00000523509.5:ENST00000522746.5:ENST00000517654.5:ENST00000522250.5:ENST00000519540.5:ENST00000522941.5:ENST00000519142.5:ENST00000518879.5:ENST00000522702.5:ENST00000521223.5:ENST00000520204.5:ENST00000518283.5:ENST00000523993.5:ENST00000520254.5:ENST00000519020.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	29	2	4.39303	4.397155	4.40128	0.0237246	0.0120289	0.118716	0.0962115
chr10	11605474	11605573	4556008	0	-	0.373737	(0.35,0.378]	chr10	420468	74	INTRON	INTRON	USP6NL	ENSG00000148429.15	ENST00000609104.6:ENST00000606752.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	30	2	3.97032	4.397045	4.82377	0.0578667	0.00325499	0.167723	0.0524329
chr12	62291084	62291184	5149856	0	+	0.37	(0.35,0.378]	chr12	487287	120	INTRON	INTRON	USP15	ENSG00000135655.16	ENST00000353364.7:ENST00000549523.5:ENST00000550632.5:ENST00000312635.10:ENST00000548524.5:ENST00000280377.10:ENST00000551206.5:ENST00000546718.5:ENST00000537297.2:ENST00000549237.5:ENST00000548836.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	30	2	3.97032	4.397045	4.82377	0.0578667	0.00325499	0.167723	0.0524329
chr6	12057422	12057522	2814680	0	+	0.36	(0.35,0.378]	chr6	264800	183	INTRON	INTRON	HIVEP1	ENSG00000095951.17	ENST00000491710.5:ENST00000487103.5:ENST00000379388.7:ENST00000627968.2:ENST00000541134.5:ENST00000442081.6:ENST00000478545.1	protein_coding	protein_coding	protein_coding	protein_coding	0	30	2	3.97032	4.397045	4.82377	0.0578667	0.00325499	0.167723	0.0524329
chr19	11107088	11107187	7016998	0	+	0.464646	(0.44,0.476]	chr19	697445	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	LDLR	ENSG00000130164.14	ENST00000557933.5:ENST00000558518.6:ENST00000545707.5:ENST00000535915.5:ENST00000455727.6:ENST00000558013.5:ENST00000252444.9:ENST00000560467.1:ENST00000558528.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	97	2	2.38763	4.397005	6.40638	0.00394089	5.71935e-6	0.0573041	0.00177762
chr16	8809711	8809808	6284778	0	+	0.340206	(0.32,0.35]	chr16	601833	23	EXON_MRNA	EXON_MRNA:INTRON	PMM2	ENSG00000140650.13	ENST00000566983.5:ENST00000682008.1:ENST00000683435.1:ENST00000683094.1:ENST00000566604.5:ENST00000570134.5:ENST00000268261.9:ENST00000683274.1:ENST00000682393.1:ENST00000566540.5:ENST00000562318.5:ENST00000565896.5:ENST00000568602.5:ENST00000570076.5:ENST00000569958.5:ENST00000565221.5:ENST00000564069.1:ENST00000567697.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	64	2	3.41554	4.396935	5.37833	0.00174321	0.00153152	0.0375363	0.0361484
chr1	243191794	243191894	668077	0	-	0.3	(0.28,0.32]	chr1	79291	3	SS3_PROX	SS3_PROX:INTRON	CEP170	ENSG00000143702.16	ENST00000366544.5:ENST00000366543.5:ENST00000366542.6:ENST00000336415.8	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.03345	4.3968799999999995	4.76031	0.0704058	0.00656106	0.184298	0.0735539
chr10	35337906	35338006	4424516	0	+	0.31	(0.28,0.32]	chr10	407899	3	INTRON	INTRON	CCNY	ENSG00000108100.18	ENST00000374706.5:ENST00000490012.6:ENST00000493157.6:ENST00000374704.8:ENST00000265375.13:ENST00000339497.7:ENST00000492478.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	31	2	4.03345	4.3968799999999995	4.76031	0.0704058	0.00656106	0.184298	0.0735539
chr13	111255987	111256087	5545729	0	+	0.32	(0.28,0.32]	chr13	529812	113	INTRON	INTRON	ARHGEF7	ENSG00000102606.19	ENST00000317133.9:ENST00000375739.6:ENST00000375741.6:ENST00000646102.2:ENST00000469877.5:ENST00000466143.5:ENST00000218789.9:ENST00000375736.8:ENST00000426073.6:ENST00000375723.5:ENST00000483189.1:ENST00000478679.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	31	2	4.03345	4.3968799999999995	4.76031	0.0704058	0.00656106	0.184298	0.0735539
chr17	65053828	65053928	6818394	0	-	0.31	(0.28,0.32]	chr17	674136	1	SS3_PROX	SS3_PROX:INTRON	GNA13	ENSG00000120063.10	ENST00000439174.7:ENST00000541118.1	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.03345	4.3968799999999995	4.76031	0.0704058	0.00656106	0.184298	0.0735539
chr2	63958158	63958258	1139394	0	-	0.32	(0.28,0.32]	chr2	122003	86	INTRON	INTRON	VPS54	ENSG00000143952.20	ENST00000409558.8:ENST00000272322.9:ENST00000354504.7	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.03345	4.3968799999999995	4.76031	0.0704058	0.00656106	0.184298	0.0735539
chr4	48682235	48682332	2138640	0	-	0.28866000000000003	(0.28,0.32]	chr4	211000	12	INTRON	INTRON	FRYL	ENSG00000075539.15	ENST00000358350.9:ENST00000503238.6:ENST00000507711.5:ENST00000502520.5:ENST00000505437.5:ENST00000514783.5:ENST00000509886.5:ENST00000515684.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	31	2	4.03345	4.3968799999999995	4.76031	0.0704058	0.00656106	0.184298	0.0735539
chr5	133103464	133103564	2488536	0	+	0.31	(0.28,0.32]	chr5	237565	2	SS3_PROX	SS3_PROX:INTRON	HSPA4	ENSG00000170606.16	ENST00000304858.7:ENST00000514825.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	31	2	4.03345	4.3968799999999995	4.76031	0.0704058	0.00656106	0.184298	0.0735539
chr1	226963524	226963621	328796	0	+	0.443299	(0.44,0.476]	chr1	37913	16	INTRON	INTRON	COQ8A	ENSG00000163050.18	ENST00000366778.5:ENST00000366777.4:ENST00000478406.5:ENST00000489044.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	29	2	4.01038	4.396655	4.78293	0.0433743	0.00292033	0.148082	0.0494641
chr11	70321996	70322096	4820925	0	+	0.47	(0.44,0.476]	chr11	449386	2	SS3_PROX	SS3_PROX:INTRON	PPFIA1	ENSG00000131626.19	ENST00000253925.12:ENST00000389547.7:ENST00000532504.5:ENST00000530746.1:ENST00000532024.1:ENST00000648755.1:ENST00000644155.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	29	2	4.01038	4.396655	4.78293	0.0433743	0.00292033	0.148082	0.0494641
chr3	185659207	185659306	1884677	0	-	0.454545	(0.44,0.476]	chr3	188520	4	INTRON	INTRON	IGF2BP2	ENSG00000073792.16	ENST00000382199.7:ENST00000346192.7:ENST00000457616.6:ENST00000421047.3:ENST00000494906.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	29	2	4.01038	4.396655	4.78293	0.0433743	0.00292033	0.148082	0.0494641
chr4	151005109	151005209	2271670	0	-	0.45	(0.44,0.476]	chr4	220921	757	INTRON	INTRON	LRBA	ENSG00000198589.14	ENST00000357115.9:ENST00000651943.2:ENST00000510413.5:ENST00000651035.1:ENST00000507224.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	29	2	4.01038	4.396655	4.78293	0.0433743	0.00292033	0.148082	0.0494641
chr8	38199656	38199755	3735310	0	+	0.464646	(0.44,0.476]	chr8	347049	65	INTRON	INTRON	BAG4	ENSG00000156735.11	ENST00000521282.1:ENST00000432471.6:ENST00000287322.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	29	2	4.01038	4.396655	4.78293	0.0433743	0.00292033	0.148082	0.0494641
chr8	48017069	48017169	3752323	0	+	0.42	(0.408,0.44]	chr8	349044	81	INTRON	INTRON	UBE2V2	ENSG00000169139.12	ENST00000523432.5:ENST00000521346.5:ENST00000523111.7:ENST00000518360.5:ENST00000517630.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	31	2	3.83494	4.396555	4.95817	0.0411442	0.00372419	0.161534	0.0535094
chr1	1644149	1644244	360449	0	-	0.463158	(0.44,0.476]	chr1	41911	13	INTRON	INTRON	CDK11B	ENSG00000248333.9	ENST00000341832.11:ENST00000407249.7:ENST00000340677.9:ENST00000611150.3:ENST00000615951.4:ENST00000626918.2:ENST00000629289.2:ENST00000629312.2:ENST00000341028.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	59	2	3.59417	4.396485	5.1988	0.00151532	5.78231e-4	0.0352794	0.0218253
chr1	247149057	247149157	683639	0	-	0.33	(0.32,0.35]	chr1	80151	99	INTRON	INTRON	ZNF124	ENSG00000196418.13	ENST00000472531.5:ENST00000476312.1:ENST00000491356.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	33	2	3.77344	4.396305	5.01917	0.0596635	0.0055659	0.189982	0.0648867
chr19	58254780	58254880	7106789	0	+	0.36	(0.35,0.378]	chr19	713342	35	INTRON	INTRON	ZNF544	ENSG00000198131.15	ENST00000599227.5:ENST00000687789.1:ENST00000594384.5:ENST00000652201.1:ENST00000596825.5:ENST00000596929.5:ENST00000596677.5:ENST00000600220.5:ENST00000600044.5:ENST00000596652.5:ENST00000599953.1:ENST00000598880.5:ENST00000595981.5:ENST00000269829.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	62	2	3.21677	4.396205	5.57564	0.00313804	5.93654e-4	0.0514466	0.0225024
chr1	1668972	1669067	360718	0	-	0.294737	(0.28,0.32]	chr1	41985	1	INTRON	INTRON	SLC35E2B	ENSG00000189339.12	ENST00000614300.4:ENST00000617444.5:ENST00000611123.1:ENST00000480991.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	31	2	4.12807	4.39583	4.66359	0.0338135	0.0193496	0.146709	0.108861
chr10	49842258	49842358	4615192	0	-	0.31	(0.28,0.32]	chr10	425135	2	SS3_PROX	SS3_PROX:INTRON	PARG	ENSG00000227345.9	ENST00000402038.7:ENST00000616448.2:ENST00000614063.4:ENST00000610922.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	31	2	4.12807	4.39583	4.66359	0.0338135	0.0193496	0.146709	0.108861
chr13	95098672	95098772	5637826	0	-	0.3	(0.28,0.32]	chr13	537050	21	INTRON	INTRON	ABCC4	ENSG00000125257.16	ENST00000645237.2:ENST00000643051.1:ENST00000643842.1:ENST00000646439.1:ENST00000644880.1:ENST00000643816.1:ENST00000536256.3:ENST00000643556.1:ENST00000629385.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	31	2	4.12807	4.39583	4.66359	0.0338135	0.0193496	0.146709	0.108861
chr15	66651474	66651574	6051476	0	+	0.32	(0.28,0.32]	chr15	576221	689	INTRON	INTRON	LINC01169	ENSG00000259471.1	ENST00000558797.1	lncRNA	lncRNA	lncRNA	lncRNA	0	31	2	4.12807	4.39583	4.66359	0.0338135	0.0193496	0.146709	0.108861
chr21	15056255	15056355	7432175	0	-	0.29	(0.28,0.32]	chr21	757990	123	INTRON	INTRON	NRIP1	ENSG00000180530.11	ENST00000400202.5:ENST00000318948.7:ENST00000400199.5:ENST00000638122.1:ENST00000637963.1:ENST00000637630.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	31	2	4.12807	4.39583	4.66359	0.0338135	0.0193496	0.146709	0.108861
chr19	52918318	52918374	7209034	0	-	0.375	(0.35,0.378]	chr19	731729	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ZNF888	ENSG00000213793.6	ENST00000638862.2:ENST00000596623.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	30	2	4.07186	4.395695	4.71953	0.0279478	0.0103314	0.137011	0.0850389
chr22	50236017	50236117	7603713	0	-	0.36	(0.35,0.378]	chr22	778832	21	INTRON	INTRON	TUBGCP6	ENSG00000128159.12	ENST00000498611.5:ENST00000439308.6:ENST00000248846.10:ENST00000434349.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	30	2	4.07186	4.395695	4.71953	0.0279478	0.0103314	0.137011	0.0850389
chr15	65454062	65454162	6207403	0	-	0.46	(0.44,0.476]	chr15	592232	4	SS5_PROX	SS5_PROX:INTRON	DPP8	ENSG00000074603.19	ENST00000341861.9:ENST00000300141.11:ENST00000358939.8:ENST00000321147.10:ENST00000558786.5:ENST00000559233.5:ENST00000395652.7:ENST00000560048.2:ENST00000558559.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	29	2	4.1054	4.39552	4.68564	0.0220205	0.00816201	0.123836	0.0766625
chr19	11946171	11946271	7019964	0	+	0.47	(0.44,0.476]	chr19	697884	205	INTRON	INTRON	ZNF700	ENSG00000196757.8	ENST00000622593.4:ENST00000254321.10	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	4.1054	4.39552	4.68564	0.0220205	0.00816201	0.123836	0.0766625
chr2	10656455	10656554	1066067	0	-	0.474747	(0.44,0.476]	chr2	113742	14	INTRON	INTRON	NOL10	ENSG00000115761.17	ENST00000695464.1:ENST00000695470.1:ENST00000695467.1:ENST00000695468.1:ENST00000695469.1:ENST00000381685.10:ENST00000695471.1:ENST00000345985.7:ENST00000538384.5:ENST00000695472.1:ENST00000695473.1:ENST00000695475.1:ENST00000695476.1:ENST00000695477.1:ENST00000695478.1:ENST00000695479.1:ENST00000431319.2:ENST00000695480.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	29	2	4.1054	4.39552	4.68564	0.0220205	0.00816201	0.123836	0.0766625
chr6	84731596	84731696	3149642	0	-	0.45	(0.44,0.476]	chr6	293606	426	INTRON	INTRON	TBX18	ENSG00000112837.17	ENST00000606784.5	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	4.1054	4.39552	4.68564	0.0220205	0.00816201	0.123836	0.0766625
chr18	26087000	26087100	6959706	0	-	0.35	(0.32,0.35]	chr18	688509	1	SS5_PROX	SS5_PROX:INTRON	SS18	ENSG00000141380.14	ENST00000415083.7:ENST00000542420.6:ENST00000579640.5:ENST00000269138.9:ENST00000269137.11:ENST00000585121.5:ENST00000539244.6:ENST00000585241.5:ENST00000578954.5:ENST00000579061.5:ENST00000577636.5:ENST00000584083.5:ENST00000578700.5:ENST00000582792.5:ENST00000581021.5:ENST00000577572.5:ENST00000582448.5:ENST00000581570.5:ENST00000577751.5:ENST00000580751.5:ENST00000580642.2:ENST00000578595.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	154	2	2.08423	4.395455	6.70668	0.00218213	5.09912e-6	0.0435144	0.00167351
chr20	35724369	35724469	7336367	0	-	0.34	(0.32,0.35]	chr20	747453	4	SS5_PROX	SS5_PROX:INTRON	RBM39	ENSG00000131051.24	ENST00000253363.11:ENST00000639702.1:ENST00000656873.1:ENST00000463004.5:ENST00000361162.10:ENST00000461283.5:ENST00000403542.6:ENST00000338163.10:ENST00000528062.7:ENST00000429968.5:ENST00000444878.5:ENST00000665058.1:ENST00000492779.5:ENST00000448303.5:ENST00000490484.7:ENST00000494274.5:ENST00000374038.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	105	2	2.98312	4.39523	5.80734	3.45606e-4	2.71305e-4	0.0173197	0.014624
chr5	54310479	54310530	2620921	0	-	0.568627	(0.515,0.57]	chr5	248874	1	UTR5	UTR5:EXON_MRNA	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000507646.2:ENST00000505630.5:ENST00000505383.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	13	563	2	4.25757	4.39484	4.53211	2.20634e-10	3.56345e-11	1.81201e-6	6.481e-7
chr22	20477386	20477485	7557336	0	-	0.40404	(0.378,0.408]	chr22	772790	22	INTRON	INTRON	KLHL22	ENSG00000099910.17	ENST00000328879.9:ENST00000479601.5:ENST00000451553.1:ENST00000444967.5:ENST00000458248.5:ENST00000443285.5:ENST00000494929.5:ENST00000431430.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	65	2	3.00568	4.39443	5.78318	0.00811866	4.21479e-5	0.0766625	0.0052571
chr2	110645266	110645365	1206520	0	-	0.50505	(0.476,0.515]	chr2	128640	26	INTRON	INTRON	BUB1	ENSG00000169679.15	ENST00000302759.11:ENST00000535254.6:ENST00000409311.5:ENST00000671097.1:ENST00000466333.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	59	2	3.2463	4.3942	5.5421	0.00262374	3.56777e-4	0.0470772	0.0175154
chr21	46268158	46268255	7471247	0	-	0.309278	(0.28,0.32]	chr21	761661	2	INTRON	INTRON	MCM3AP	ENSG00000160294.11	ENST00000397708.1:ENST00000291688.6	protein_coding	protein_coding	protein_coding	protein_coding	2	91	2	3.11673	4.39415	5.67157	9.48957e-4	6.61685e-4	0.0281755	0.0232856
chr1	52245889	52245989	102651	0	+	0.41	(0.408,0.44]	chr1	13486	59	INTRON	INTRON	ZFYVE9	ENSG00000157077.16	ENST00000287727.8:ENST00000371591.2:ENST00000357206.6:ENST00000361625.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	29	2	4.00385	4.393665	4.78348	0.0454568	0.00290352	0.149888	0.0494641
chr10	45980347	45980445	4430461	0	+	0.428571	(0.408,0.44]	chr10	408468	45	INTRON	INTRON	TIMM23	ENSG00000265354.4	ENST00000580018.4	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	4.00385	4.393665	4.78348	0.0454568	0.00290352	0.149888	0.0494641
chr20	32550885	32550985	7326576	0	-	0.42	(0.408,0.44]	chr20	746144	16	INTRON	INTRON	NOL4L	ENSG00000197183.15	ENST00000621426.7:ENST00000201961.6:ENST00000485364.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	29	2	4.00385	4.393665	4.78348	0.0454568	0.00290352	0.149888	0.0494641
chr21	42002796	42002896	7467455	0	-	0.42	(0.408,0.44]	chr21	760904	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ZBTB21	ENSG00000173276.14	ENST00000310826.10:ENST00000398505.7:ENST00000398511.3:ENST00000398499.5:ENST00000465968.5:ENST00000425521.1:ENST00000398497.2:ENST00000449949.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	29	2	4.00385	4.393665	4.78348	0.0454568	0.00290352	0.149888	0.0494641
chr3	172793747	172793847	1563662	0	+	0.41	(0.408,0.44]	chr3	161807	68	INTRON	INTRON	ECT2	ENSG00000114346.14	ENST00000232458.9:ENST00000540509.5:ENST00000392692.8:ENST00000417960.5:ENST00000441497.6	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	4.00385	4.393665	4.78348	0.0454568	0.00290352	0.149888	0.0494641
chr5	90681554	90681654	2421651	0	+	0.41	(0.408,0.44]	chr5	232920	1	SS5_PROX	SS5_PROX:INTRON	ADGRV1	ENSG00000164199.18	ENST00000405460.9:ENST00000640403.1:ENST00000639473.1:ENST00000639431.1:ENST00000640779.1:ENST00000640012.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	29	2	4.00385	4.393665	4.78348	0.0454568	0.00290352	0.149888	0.0494641
chr18	13732334	13732434	6878030	0	+	0.27	[0,0.28]	chr18	681612	4	SS5_PROX	SS5_PROX:INTRON	RNMT	ENSG00000101654.18	ENST00000543302.6:ENST00000588457.5:ENST00000383314.7:ENST00000592764.5:ENST00000589866.5:ENST00000262173.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	33	2	3.96122	4.392775	4.82433	0.0617993	0.0200334	0.193423	0.109608
chr7	105050296	105050396	3374985	0	+	0.38	(0.378,0.408]	chr7	315877	89	INTRON	INTRON	KMT2E	ENSG00000005483.22	ENST00000622386.2:ENST00000257745.9:ENST00000334884.9:ENST00000311117.8:ENST00000478990.5:ENST00000495267.5:ENST00000476671.5:ENST00000667857.1:ENST00000474203.5:ENST00000482560.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	122	2	2.57555	4.392715	6.20988	3.56957e-4	2.51359e-5	0.0169148	0.00413384
chr5	179718178	179718277	2560896	0	+	0.50505	(0.476,0.515]	chr5	244930	15	INTRON	INTRON	CANX	ENSG00000127022.16	ENST00000681674.1:ENST00000681712.1:ENST00000681903.1:ENST00000680406.1:ENST00000502296.6:ENST00000504734.5:ENST00000452673.6:ENST00000679719.1:ENST00000679523.1:ENST00000679395.1:ENST00000681504.1:ENST00000679642.1:ENST00000681894.1:ENST00000680504.1:ENST00000681265.1:ENST00000680894.1:ENST00000680812.1:ENST00000680614.1:ENST00000680985.1:ENST00000680837.1:ENST00000680827.1:ENST00000681576.1:ENST00000680984.1:ENST00000680042.1:ENST00000681762.1:ENST00000681476.1:ENST00000681072.1:ENST00000247461.9:ENST00000513246.6:ENST00000680618.1:ENST00000502673.6:ENST00000680092.1:ENST00000506654.6:ENST00000514032.5:ENST00000681733.1:ENST00000679471.1:ENST00000679527.1:ENST00000680006.1:ENST00000681398.1:ENST00000681431.1:ENST00000680013.1:ENST00000681076.1:ENST00000681168.1:ENST00000509563.2:ENST00000681342.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	62	2	3.19975	4.3926	5.58545	0.00383299	1.04881e-4	0.0542786	0.00863456
chr7	121077946	121078045	3394536	0	+	0.272727	[0,0.28]	chr7	317710	9	INTRON	INTRON	CPED1	ENSG00000106034.18	ENST00000310396.10:ENST00000428526.5:ENST00000450913.6:ENST00000520801.5:ENST00000423795.5:ENST00000443817.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	294	2	3.99105	4.39251	4.79397	1.03385e-5	1.60697e-6	0.00251488	7.6465e-4
chr1	211824361	211824461	631344	0	-	0.41	(0.408,0.44]	chr1	74654	308	INTRON	INTRON	LPGAT1	ENSG00000123684.13	ENST00000366997.9:ENST00000366996.1	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	4.10594	4.392440000000001	4.67894	0.0219367	0.0087648	0.123836	0.0788605
chr2	152738758	152738857	894459	0	+	0.434343	(0.408,0.44]	chr2	99130	15	INTRON	INTRON	ARL6IP6	ENSG00000177917.12	ENST00000690727.1:ENST00000685752.1:ENST00000688293.1:ENST00000686839.1:ENST00000689155.1:ENST00000691702.1:ENST00000691523.1:ENST00000688012.1:ENST00000687504.1:ENST00000455875.6:ENST00000692399.1:ENST00000425034.6:ENST00000686080.1:ENST00000326446.10:ENST00000463690.2:ENST00000688130.1:ENST00000495469.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	29	2	4.10594	4.392440000000001	4.67894	0.0219367	0.0087648	0.123836	0.0788605
chr8	94985772	94985871	3801651	0	+	0.424242	(0.408,0.44]	chr8	352522	17	INTRON	INTRON	NDUFAF6	ENSG00000156170.13	ENST00000523378.5:ENST00000396113.5:ENST00000519136.5:ENST00000396111.6:ENST00000521840.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	29	2	4.10594	4.392440000000001	4.67894	0.0219367	0.0087648	0.123836	0.0788605
chr9	130866732	130866832	4215394	0	+	0.42	(0.408,0.44]	chr9	386448	33	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000318560.6	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	4.10594	4.392440000000001	4.67894	0.0219367	0.0087648	0.123836	0.0788605
chr10	14850882	14850966	4396860	0	+	0.321429	(0.32,0.35]	chr10	405902	3	EXON_LNCRNA	EXON_LNCRNA:SS3_PROX:INTRON	HSPA14	ENSG00000187522.16	ENST00000378372.8:ENST00000470430.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	64	2	3.49869	4.391595000000001	5.2845	0.00240071	0.00108004	0.0440612	0.0300133
chr8	99022930	99023030	3811354	0	+	0.35	(0.32,0.35]	chr8	353059	86	INTRON	INTRON	VPS13B	ENSG00000132549.20	ENST00000496144.5:ENST00000683334.1:ENST00000682853.1:ENST00000357162.7:ENST00000358544.7:ENST00000683619.1:ENST00000441350.2:ENST00000684269.1:ENST00000682806.1:ENST00000683869.1:ENST00000682153.1:ENST00000682358.1:ENST00000682145.1:ENST00000355155.6:ENST00000682234.1:ENST00000683486.1:ENST00000684308.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	64	2	3.49869	4.391595000000001	5.2845	0.00240071	0.00108004	0.0440612	0.0300133
chr1	165634931	165635029	243401	0	+	0.346939	(0.32,0.35]	chr1	29081	23	INTRON	INTRON	MGST3	ENSG00000143198.13	ENST00000367888.8:ENST00000461308.1:ENST00000367889.8:ENST00000460632.1:ENST00000495447.5:ENST00000367885.5:ENST00000367884.6:ENST00000488688.1:ENST00000367883.3:ENST00000627653.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	30	2	4.06299	4.391344999999999	4.7197	0.0559439	0.00568521	0.165463	0.0678837
chr17	47217010	47217110	6621428	0	+	0.34	(0.32,0.35]	chr17	645806	27	INTRON	INTRON	MYL4	ENSG00000198336.9	ENST00000571981.5:ENST00000572316.5:ENST00000354968.5:ENST00000570772.5:ENST00000536623.6:ENST00000576874.5:ENST00000573747.6:ENST00000393450.5:ENST00000572303.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	30	2	4.06299	4.391344999999999	4.7197	0.0559439	0.00568521	0.165463	0.0678837
chr3	9977050	9977150	1612259	0	-	0.34	(0.32,0.35]	chr3	166462	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	EMC3	ENSG00000125037.13	ENST00000245046.7:ENST00000686016.1:ENST00000470827.3:ENST00000693754.1:ENST00000497557.2:ENST00000685575.1:ENST00000487465.5:ENST00000429759.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	30	2	4.06299	4.391344999999999	4.7197	0.0559439	0.00568521	0.165463	0.0678837
chr3	167712577	167712677	1853825	0	-	0.33	(0.32,0.35]	chr3	186313	73	INTRON	INTRON	PDCD10	ENSG00000114209.15	ENST00000392750.7:ENST00000473645.6:ENST00000497056.6:ENST00000492396.5:ENST00000461494.5:ENST00000470131.5:ENST00000475915.6:ENST00000487947.6:ENST00000471885.5:ENST00000479121.5:ENST00000462725.6:ENST00000492139.5:ENST00000483451.5:ENST00000494502.6:ENST00000464360.5:ENST00000481136.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	30	2	4.06299	4.391344999999999	4.7197	0.0559439	0.00568521	0.165463	0.0678837
chr4	134295811	134295911	2244455	0	-	0.33	(0.32,0.35]	chr4	219400	359	INTRON	INTRON	ENSG00000251199	ENSG00000251199.6	ENST00000658435.1:ENST00000658033.1:ENST00000668641.1:ENST00000670570.1:ENST00000661637.1:ENST00000663124.1:ENST00000668013.1:ENST00000654404.1:ENST00000665766.1:ENST00000663875.1:ENST00000664397.1:ENST00000667687.1:ENST00000656052.1:ENST00000671422.1:ENST00000665122.1:ENST00000669907.1:ENST00000504728.6:ENST00000654413.1:ENST00000653580.1	lncRNA	lncRNA	lncRNA	lncRNA	0	30	2	4.06299	4.391344999999999	4.7197	0.0559439	0.00568521	0.165463	0.0678837
chr6	43567943	43568032	3097254	0	-	0.325843	(0.32,0.35]	chr6	290103	2	INTRON	INTRON	XPO5	ENSG00000124571.18	ENST00000265351.12	protein_coding	protein_coding	protein_coding	protein_coding	0	30	2	4.06299	4.391344999999999	4.7197	0.0559439	0.00568521	0.165463	0.0678837
chr7	23404231	23404326	3503000	0	-	0.347368	(0.32,0.35]	chr7	326886	13	INTRON	INTRON	IGF2BP3	ENSG00000136231.14	ENST00000258729.8:ENST00000421467.6:ENST00000468263.5:ENST00000479504.5:ENST00000466809.6:ENST00000491719.5:ENST00000465058.5:ENST00000469723.5:ENST00000476938.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	30	2	4.06299	4.391344999999999	4.7197	0.0559439	0.00568521	0.165463	0.0678837
chr7	152194758	152194853	3678837	0	-	0.326316	(0.32,0.35]	chr7	341502	3	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000683200.1:ENST00000682283.1:ENST00000473186.5:ENST00000679882.1:ENST00000680969.1:ENST00000681033.1:ENST00000682176.1:ENST00000679645.1:ENST00000683185.1:ENST00000683254.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	30	2	4.06299	4.391344999999999	4.7197	0.0559439	0.00568521	0.165463	0.0678837
chr4	126726145	126726245	2237972	0	-	0.33	(0.32,0.35]	chr4	219029	275	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	7	156	2	2.37647	4.3913	6.40613	4.86764e-4	2.35543e-5	0.0199652	0.00396325
chr1	52395162	52395258	456975	0	-	0.375	(0.35,0.378]	chr1	54893	10	INTRON	INTRON	ORC1	ENSG00000085840.13	ENST00000371568.8:ENST00000371566.1	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	4.1971	4.391235	4.58537	0.0367539	0.00703328	0.138959	0.0754576
chr1	108790986	108791086	178701	0	+	0.37	(0.35,0.378]	chr1	19433	79	INTRON	INTRON	STXBP3	ENSG00000116266.11	ENST00000370008.4:ENST00000495245.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	29	2	4.1971	4.391235	4.58537	0.0367539	0.00703328	0.138959	0.0754576
chr12	76551030	76551130	5372298	0	-	0.36	(0.35,0.378]	chr12	512509	127	INTRON	INTRON	OSBPL8	ENSG00000091039.17	ENST00000261183.8:ENST00000393249.6:ENST00000611266.4:ENST00000393250.8:ENST00000547540.5:ENST00000553139.5:ENST00000549570.5:ENST00000550628.5:ENST00000549646.5:ENST00000551927.5:ENST00000547544.5:ENST00000552178.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	29	2	4.1971	4.391235	4.58537	0.0367539	0.00703328	0.138959	0.0754576
chr19	47151595	47151695	7084082	0	+	0.37	(0.35,0.378]	chr19	708762	2	SS3_PROX	SS3_PROX:INTRON	SAE1	ENSG00000142230.13	ENST00000594144.5:ENST00000594526.5:ENST00000597808.5:ENST00000413379.7:ENST00000600706.5:ENST00000270225.12:ENST00000598840.5:ENST00000414294.6:ENST00000600753.1:ENST00000660039.1:ENST00000664120.1:ENST00000596995.1:ENST00000392776.3:ENST00000659110.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	29	2	4.1971	4.391235	4.58537	0.0367539	0.00703328	0.138959	0.0754576
chr19	49853068	49853161	7091537	0	+	0.365591	(0.35,0.378]	chr19	710507	5	INTRON	INTRON	PTOV1	ENSG00000104960.15	ENST00000601612.5:ENST00000594151.5:ENST00000600603.5:ENST00000601638.5:ENST00000598632.5:ENST00000601501.5:ENST00000594165.5:ENST00000598325.5:ENST00000391842.5:ENST00000599732.5:ENST00000601675.5:ENST00000602040.5:ENST00000594640.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	29	2	4.1971	4.391235	4.58537	0.0367539	0.00703328	0.138959	0.0754576
chr5	62557635	62557735	2364486	0	+	0.36	(0.35,0.378]	chr5	228001	59	INTRON	INTRON	IPO11	ENSG00000086200.17	ENST00000424533.5:ENST00000325324.11:ENST00000409296.7:ENST00000511713.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	29	2	4.1971	4.391235	4.58537	0.0367539	0.00703328	0.138959	0.0754576
chr9	69185704	69185803	4138232	0	+	0.373737	(0.35,0.378]	chr9	377085	1	INTRON	INTRON	TJP2	ENSG00000119139.21	ENST00000643713.1:ENST00000606364.5:ENST00000648087.1:ENST00000423935.6:ENST00000647986.1:ENST00000636438.1:ENST00000377259.5:ENST00000377245.9:ENST00000348208.9:ENST00000649114.1:ENST00000649943.1:ENST00000636247.1:ENST00000650333.1:ENST00000650522.1:ENST00000649783.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	29	2	4.1971	4.391235	4.58537	0.0367539	0.00703328	0.138959	0.0754576
chr9	92010184	92010284	4285373	0	-	0.52	(0.515,0.57]	chr9	393945	84	INTRON	INTRON	SPTLC1	ENSG00000090054.16	ENST00000643599.1:ENST00000642671.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	1	55	2	3.8052	4.39121	4.97722	0.00168681	1.67082e-4	0.0370386	0.0111796
chr1	30951344	30951441	411729	0	-	0.350515	(0.35,0.378]	chr1	49639	7	INTRON	INTRON	PUM1	ENSG00000134644.16	ENST00000426105.7:ENST00000373747.7:ENST00000257075.9:ENST00000424085.6:ENST00000525843.5:ENST00000440538.6:ENST00000498419.5:ENST00000373741.8:ENST00000373742.6:ENST00000529846.5:ENST00000525997.1:ENST00000527498.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	82	2	3.05367	4.39116	5.72865	7.17897e-4	3.18898e-4	0.0244389	0.016499
chr1	2192378	2192474	362930	0	-	0.416667	(0.408,0.44]	chr1	42339	6	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	FAAP20	ENSG00000162585.17	ENST00000400919.7:ENST00000469733.5:ENST00000414253.5:ENST00000428120.5:ENST00000400918.7:ENST00000497675.2:ENST00000487186.5:ENST00000401813.7:ENST00000378546.9:ENST00000378543.2:ENST00000476803.1:ENST00000440825.6:ENST00000420515.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	78	2	2.9826	4.391115	5.79963	9.23082e-4	1.39468e-4	0.0278392	0.0107072
chr1	212866398	212866497	309921	0	+	0.333333	(0.32,0.35]	chr1	35794	15	INTRON	INTRON	FLVCR1	ENSG00000162769.13	ENST00000366971.9:ENST00000419102.1:ENST00000579295.1:ENST00000474693.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	118	2	2.35389	4.391064999999999	6.42824	0.00241005	2.1132e-5	0.0453511	0.00376117
chrX	154062446	154062545	7912744	0	-	0.333333	(0.32,0.35]	chrX	805631	22	INTRON	INTRON	MECP2	ENSG00000169057.24	ENST00000303391.11:ENST00000453960.7:ENST00000628176.2:ENST00000407218.5:ENST00000369957.5:ENST00000631210.1:ENST00000496908.5:ENST00000415944.3:ENST00000630151.2:ENST00000676382.1:ENST00000611468.2:ENST00000637533.1:ENST00000675526.1:ENST00000637791.1:ENST00000675841.1:ENST00000674996.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	103	2	2.8152	4.39103	5.96686	6.37027e-4	1.77352e-4	0.0228285	0.0121697
chr1	61687121	61687221	467985	0	-	0.37	(0.35,0.378]	chr1	56548	2	SS3_PROX	SS3_PROX:INTRON	TM2D1	ENSG00000162604.12	ENST00000606498.5:ENST00000294613.9:ENST00000371180.6:ENST00000488206.5:ENST00000472989.5:ENST00000488410.5:ENST00000468586.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	29	2	4.29961	4.390725	4.48184	0.0191702	0.0158483	0.109464	0.108861
chr1	108287144	108287244	176506	0	+	0.36	(0.35,0.378]	chr1	19153	24	INTRON	INTRON	SLC25A24P1	ENSG00000241361.8	ENST00000411846.6:ENST00000434803.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	29	2	4.29961	4.390725	4.48184	0.0191702	0.0158483	0.109464	0.108861
chr1	245945062	245945162	675079	0	-	0.36	(0.35,0.378]	chr1	79699	144	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000366517.5:ENST00000490107.6:ENST00000493441.5:ENST00000488153.5:ENST00000492487.5:ENST00000391836.3:ENST00000464398.1:ENST00000453676.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	29	2	4.29961	4.390725	4.48184	0.0191702	0.0158483	0.109464	0.108861
chr17	77447566	77447666	6681124	0	+	0.37	(0.35,0.378]	chr17	652548	5	INTRON	INTRON	SEPTIN9	ENSG00000184640.20	ENST00000591198.5:ENST00000427177.6:ENST00000431235.6:ENST00000449803.6:ENST00000329047.13:ENST00000588575.1:ENST00000590294.6:ENST00000588690.6:ENST00000423034.6:ENST00000590059.5:ENST00000427674.6:ENST00000592420.1:ENST00000585930.5:ENST00000591020.5:ENST00000586521.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	29	2	4.29961	4.390725	4.48184	0.0191702	0.0158483	0.109464	0.108861
chr18	12647711	12647811	6949190	0	-	0.37	(0.35,0.378]	chr18	687396	115	INTRON	INTRON	SPIRE1	ENSG00000134278.16	ENST00000409402.9:ENST00000410092.7:ENST00000309836.9:ENST00000453447.6:ENST00000449797.5:ENST00000497844.6:ENST00000462226.1	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	4.29961	4.390725	4.48184	0.0191702	0.0158483	0.109464	0.108861
chr2	161370972	161371071	901742	0	+	0.353535	(0.35,0.378]	chr2	99721	4	SS3_PROX	SS3_PROX:INTRON	PSMD14	ENSG00000115233.12	ENST00000409682.8	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	4.29961	4.390725	4.48184	0.0191702	0.0158483	0.109464	0.108861
chr6	36030756	36030856	2853084	0	+	0.36	(0.35,0.378]	chr6	269622	12	INTRON	INTRON	MAPK14	ENSG00000112062.11	ENST00000622903.4:ENST00000229795.7:ENST00000468133.5:ENST00000229794.9:ENST00000310795.8:ENST00000491957.5:ENST00000496250.5:ENST00000474429.5:ENST00000472333.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	29	2	4.29961	4.390725	4.48184	0.0191702	0.0158483	0.109464	0.108861
chr7	67057286	67057386	3327251	0	+	0.37	(0.35,0.378]	chr7	309435	10	INTRON	INTRON	TYW1	ENSG00000198874.14	ENST00000359626.10:ENST00000361660.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	29	2	4.29961	4.390725	4.48184	0.0191702	0.0158483	0.109464	0.108861
chr9	97261920	97262020	4170348	0	+	0.37	(0.35,0.378]	chr9	379898	100	INTRON	INTRON	SUGT1P4-STRA6LP	ENSG00000254876.5	ENST00000527128.5:ENST00000375204.2	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	0	29	2	4.29961	4.390725	4.48184	0.0191702	0.0158483	0.109464	0.108861
chr10	84376806	84376906	4477962	0	+	0.35	(0.32,0.35]	chr10	412211	26	INTRON	INTRON	CCSER2	ENSG00000107771.17	ENST00000372088.8:ENST00000224756.12	protein_coding	protein_coding	protein_coding	protein_coding	0	30	2	4.16186	4.390375000000001	4.61889	0.026079	0.0166646	0.133676	0.102621
chr2	233365164	233365264	1039932	0	+	0.33	(0.32,0.35]	chr2	110978	101	INTRON	INTRON	DGKD	ENSG00000077044.11	ENST00000264057.7:ENST00000427930.5:ENST00000442524.4	protein_coding	protein_coding	protein_coding	protein_coding	0	30	2	4.16186	4.390375000000001	4.61889	0.026079	0.0166646	0.133676	0.102621
chr2	12717522	12717620	703509	0	+	0.469388	(0.44,0.476]	chr2	81579	7	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	TRIB2	ENSG00000071575.12	ENST00000483034.1:ENST00000381465.2:ENST00000155926.9	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	78	2	2.9044	4.390015	5.87563	0.00132926	8.84961e-5	0.0335085	0.00842626
chr6	106185556	106185654	3176751	0	-	0.397959	(0.378,0.408]	chr6	296149	12	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	ATG5	ENSG00000057663.16	ENST00000636437.1:ENST00000636335.1:ENST00000369070.5:ENST00000369076.8:ENST00000635758.2:ENST00000360666.6:ENST00000343245.7:ENST00000475645.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	60	2	3.22599	4.389935	5.55388	0.00288652	5.01023e-4	0.0494641	0.0206993
chr9	35069124	35069224	4247459	0	-	0.39	(0.378,0.408]	chr9	390813	3	SS3_PROX	SS3_PROX:INTRON	VCP	ENSG00000165280.18	ENST00000679902.1:ENST00000678465.1:ENST00000677257.1:ENST00000679800.1:ENST00000678018.1:ENST00000678650.1:ENST00000448530.6:ENST00000358901.11:ENST00000679647.1:ENST00000681335.1:ENST00000417448.2:ENST00000680916.1:ENST00000679599.1:ENST00000679862.1:ENST00000681690.1:ENST00000679204.2:ENST00000676836.2:ENST00000493886.5:ENST00000480327.2:ENST00000680079.1:ENST00000681386.1:ENST00000679392.1:ENST00000680575.1:ENST00000680108.1:ENST00000679901.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	60	2	3.22599	4.389935	5.55388	0.00288652	5.01023e-4	0.0494641	0.0206993
chr19	8003199	8003299	7130787	0	-	0.51	(0.476,0.515]	chr19	718391	11	INTRON	INTRON	ELAVL1	ENSG00000066044.15	ENST00000407627.7:ENST00000593807.1	protein_coding	protein_coding	protein_coding	protein_coding	3	94	2	2.59304	4.3899099999999995	6.18678	0.00158794	1.63637e-5	0.0367961	0.00324999
chr22	24110567	24110667	7486182	0	+	0.3	(0.28,0.32]	chr22	763887	119	INTRON	INTRON	CABIN1	ENSG00000099991.18	ENST00000263119.10:ENST00000617531.4:ENST00000405822.6:ENST00000398319.6:ENST00000467937.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	67	2	3.43186	4.389755	5.34765	0.00287138	0.00160646	0.0474836	0.0367961
chr2	86622786	86622886	1171986	0	-	0.46	(0.44,0.476]	chr2	125090	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	RNF103	ENSG00000239305.7	ENST00000237455.5:ENST00000463333.6:ENST00000477307.5:ENST00000465629.5:ENST00000472680.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	81	2	3.42668	4.389475	5.35227	8.47974e-4	9.22416e-5	0.0267232	0.00802983
chr1	121180672	121180770	536904	0	-	0.5	(0.476,0.515]	chr1	63068	30	INTRON	INTRON	FAM72B	ENSG00000188610.12	ENST00000369390.7:ENST00000355228.8:ENST00000619376.4:ENST00000471903.6:ENST00000452190.2:ENST00000468129.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	28	2	4.34648	4.388705	4.43093	0.0193566	0.00931369	0.108861	0.0855292
chr1	180018852	180018951	268091	0	+	0.484848	(0.476,0.515]	chr1	31361	25	INTRON	INTRON	CEP350	ENSG00000135837.16	ENST00000367607.8	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.34648	4.388705	4.43093	0.0193566	0.00931369	0.108861	0.0855292
chr10	7754547	7754643	4552986	0	-	0.510417	(0.476,0.515]	chr10	420278	6	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	KIN	ENSG00000151657.12	ENST00000379562.9:ENST00000498098.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	28	2	4.34648	4.388705	4.43093	0.0193566	0.00931369	0.108861	0.0855292
chr12	108555480	108555579	5405708	0	-	0.494949	(0.476,0.515]	chr12	515930	14	INTRON	INTRON	SART3	ENSG00000075856.12	ENST00000546815.6:ENST00000651280.1:ENST00000228284.8:ENST00000546728.5:ENST00000431469.6:ENST00000547528.5:ENST00000552221.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	28	2	4.34648	4.388705	4.43093	0.0193566	0.00931369	0.108861	0.0855292
chr2	167922831	167922931	1259031	0	-	0.49	(0.476,0.515]	chr2	133340	217	INTRON	INTRON	B3GALT1-AS1	ENSG00000235335.3	ENST00000430546.2:ENST00000657553.1:ENST00000670221.1:ENST00000436982.2	lncRNA	lncRNA	lncRNA	lncRNA	0	28	2	4.34648	4.388705	4.43093	0.0193566	0.00931369	0.108861	0.0855292
chr3	197236058	197236158	1902884	0	-	0.51	(0.476,0.515]	chr3	190659	98	INTRON	INTRON	DLG1	ENSG00000075711.21	ENST00000667157.1:ENST00000346964.6:ENST00000663148.1:ENST00000655488.1:ENST00000357674.9:ENST00000671185.1:ENST00000658701.1:ENST00000667104.1:ENST00000661336.1:ENST00000669565.1:ENST00000670455.1:ENST00000656087.1:ENST00000670366.1:ENST00000661453.1:ENST00000665728.1:ENST00000664564.1:ENST00000660432.1:ENST00000660898.1:ENST00000657381.1:ENST00000659221.1:ENST00000654737.1:ENST00000669332.1:ENST00000659716.1:ENST00000664991.1:ENST00000419354.5:ENST00000661440.1:ENST00000667971.1:ENST00000670935.1:ENST00000666007.1:ENST00000661229.1:ENST00000661013.1:ENST00000436682.6:ENST00000662727.1:ENST00000422288.6:ENST00000448528.6:ENST00000656944.1:ENST00000392382.6:ENST00000450955.5:ENST00000658155.1:ENST00000669714.1:ENST00000654733.1:ENST00000419227.5:ENST00000392381.7:ENST00000471733.5:ENST00000419553.6:ENST00000661808.1:ENST00000453607.5:ENST00000456699.6:ENST00000392380.6:ENST00000485409.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	28	2	4.34648	4.388705	4.43093	0.0193566	0.00931369	0.108861	0.0855292
chr5	40786179	40786279	2611047	0	-	0.48	(0.476,0.515]	chr5	248267	82	INTRON	INTRON	PRKAA1	ENSG00000132356.12	ENST00000397128.7:ENST00000354209.7:ENST00000506652.5:ENST00000509874.5:ENST00000296800.4:ENST00000511248.1:ENST00000397006.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	28	2	4.34648	4.388705	4.43093	0.0193566	0.00931369	0.108861	0.0855292
chr5	76484971	76485071	2392890	0	+	0.48	(0.476,0.515]	chr5	231113	220	INTRON	INTRON	IQGAP2	ENSG00000145703.17	ENST00000274364.11:ENST00000514350.5	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.34648	4.388705	4.43093	0.0193566	0.00931369	0.108861	0.0855292
chr6	104831524	104831624	3172207	0	-	0.5	(0.476,0.515]	chr6	295904	2	SS3_PROX	SS3_PROX:INTRON	HACE1:ENSG00000227535	ENSG00000085382.12:ENSG00000227535.2	ENST00000262903.9:ENST00000416605.6:ENST00000369125.6:ENST00000519645.5:ENST00000422930.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:nonsense_mediated_decay:lncRNA	0	28	2	4.34648	4.388705	4.43093	0.0193566	0.00931369	0.108861	0.0855292
chr2	10176127	10176227	691265	0	+	0.39	(0.378,0.408]	chr2	81109	200	INTRON	INTRON	RRM2	ENSG00000171848.16	ENST00000641498.1:ENST00000381786.7	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	1	64	2	2.85854	4.388695	5.91885	0.0107837	1.02858e-4	0.0920575	0.00915589
chr11	61442840	61442940	4796655	0	+	0.54	(0.515,0.57]	chr11	444313	41	INTRON	INTRON	ENSG00000256591:SDHAF2	ENSG00000256591.5:ENSG00000167985.7	ENST00000544025.5:ENST00000542794.5:ENST00000541135.5:ENST00000542074.1:ENST00000536670.5:ENST00000301761.7:ENST00000538594.5:ENST00000537782.5:ENST00000359614.9:ENST00000544801.5:ENST00000544880.1:ENST00000543265.1:ENST00000543044.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	75	2	2.99316	4.388685	5.78421	9.21623e-4	1.63043e-5	0.0278396	0.00304426
chr21	38116710	38116810	7464053	0	-	0.34	(0.32,0.35]	chr21	760303	170	INTRON	INTRON	DSCR4	ENSG00000184029.9	ENST00000398948.5:ENST00000328264.7:ENST00000482032.1	lncRNA	lncRNA	lncRNA	lncRNA	5	133	2	2.63915	4.388365	6.13758	3.07687e-4	8.35107e-5	0.0156964	0.00815123
chr2	95102597	95102695	1177419	0	-	0.459184	(0.44,0.476]	chr2	125626	10	EXON_MRNA	EXON_MRNA:INTRON	MRPS5	ENSG00000289685.1	ENST00000272418.7:ENST00000345084.10:ENST00000695437.1:ENST00000695436.1:ENST00000695435.1:ENST00000695434.1:ENST00000695433.1:ENST00000695432.1:ENST00000695439.1:ENST00000461916.6:ENST00000475895.6:ENST00000482568.1:ENST00000695440.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	162	2	2.36991	4.388145	6.40638	1.92833e-4	5.71935e-6	0.012131	0.00177762
chr1	23020347	23020447	43766	0	+	0.5	(0.476,0.515]	chr1	5251	4	SS5_PROX	SS5_PROX:INTRON	KDM1A	ENSG00000004487.18	ENST00000692214.1:ENST00000686934.1:ENST00000689853.1:ENST00000465864.2:ENST00000691256.1:ENST00000688122.1:ENST00000692056.1:ENST00000692853.1:ENST00000689366.1:ENST00000686270.1:ENST00000685102.1:ENST00000690627.1:ENST00000686771.1:ENST00000692209.1:ENST00000686339.1:ENST00000691813.1:ENST00000693156.1:ENST00000688235.1:ENST00000692975.1:ENST00000687202.1:ENST00000691682.1:ENST00000691404.1:ENST00000691694.1:ENST00000688680.1:ENST00000356634.7:ENST00000400181.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	59	2	3.62464	4.388035	5.15143	0.00166579	5.079e-4	0.0369207	0.0202328
chr20	34486975	34487074	7260379	0	+	0.393939	(0.378,0.408]	chr20	737555	54	INTRON	INTRON	ITCH	ENSG00000078747.16	ENST00000374864.10:ENST00000535650.7:ENST00000670516.1:ENST00000665484.1:ENST00000664852.1:ENST00000660337.1:ENST00000262650.10:ENST00000665346.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	65	2	2.95459	4.38778	5.82097	0.00957623	3.45471e-5	0.0820838	0.00467863
chr8	144387874	144387972	3882218	0	+	0.5	(0.476,0.515]	chr8	356996	43	INTRON	INTRON	ADCK5	ENSG00000173137.12	ENST00000534714.5:ENST00000526231.6:ENST00000533715.2:ENST00000529654.5:ENST00000308860.11:ENST00000532190.2:ENST00000526833.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	59	2	3.19119	4.38772	5.58425	0.00325748	2.97744e-4	0.0524329	0.0160246
chr14	101809702	101809802	5818980	0	+	0.45	(0.44,0.476]	chr14	551836	65	INTRON	INTRON	PPP2R5C	ENSG00000078304.20	ENST00000694906.1:ENST00000422945.6:ENST00000554442.5:ENST00000556068.5:ENST00000328724.9:ENST00000554504.1:ENST00000553890.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	139	2	2.15225	4.38762	6.62299	0.00129761	1.64806e-6	0.0333764	8.57425e-4
chr1	229294953	229295051	333515	0	+	0.44898	(0.44,0.476]	chr1	38826	58	INTRON	INTRON	RAB4A	ENSG00000168118.12	ENST00000618010.4:ENST00000366690.5:ENST00000473894.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	28	2	4.33899	4.3871199999999995	4.43525	0.0206616	0.00897296	0.110999	0.0849778
chr10	21989617	21989717	4578542	0	-	0.45	(0.44,0.476]	chr10	421947	601	INTRON	INTRON	DNAJC1	ENSG00000136770.11	ENST00000376980.8:ENST00000476103.3:ENST00000447548.5:ENST00000376946.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	28	2	4.33899	4.3871199999999995	4.43525	0.0206616	0.00897296	0.110999	0.0849778
chr12	120158206	120158282	5432865	0	-	0.473684	(0.44,0.476]	chr12	519222	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GCN1	ENSG00000089154.11	ENST00000300648.7:ENST00000547369.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	28	2	4.33899	4.3871199999999995	4.43525	0.0206616	0.00897296	0.110999	0.0849778
chr17	22201097	22201197	6579677	0	+	0.46	(0.44,0.476]	chr17	639568	175	INTRON	INTRON	UBBP4	ENSG00000263563.7	ENST00000648259.1:ENST00000688301.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	28	2	4.33899	4.3871199999999995	4.43525	0.0206616	0.00897296	0.110999	0.0849778
chr2	98559062	98559162	834046	0	+	0.47	(0.44,0.476]	chr2	93502	2	SS3_PROX	SS3_PROX:INTRON	INPP4A	ENSG00000040933.16	ENST00000409016.8:ENST00000409851.8:ENST00000074304.9:ENST00000409463.5:ENST00000409540.7:ENST00000523221.1	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.33899	4.3871199999999995	4.43525	0.0206616	0.00897296	0.110999	0.0849778
chr20	63871309	63871407	7300747	0	+	0.469388	(0.44,0.476]	chr20	743096	15	INTRON	INTRON	TPD52L2	ENSG00000101150.18	ENST00000611972.4:ENST00000615907.4:ENST00000369927.8:ENST00000346249.9:ENST00000348257.9:ENST00000352482.8:ENST00000351424.8:ENST00000217121.9:ENST00000358548.4	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.33899	4.3871199999999995	4.43525	0.0206616	0.00897296	0.110999	0.0849778
chr3	17732244	17732344	1630330	0	-	0.45	(0.44,0.476]	chr3	168275	300	INTRON	INTRON	TBC1D5	ENSG00000131374.15	ENST00000253692.11:ENST00000696125.1:ENST00000414318.2:ENST00000429383.8:ENST00000415814.6:ENST00000452492.6:ENST00000412981.5:ENST00000428355.5:ENST00000425944.5:ENST00000430169.5:ENST00000445294.5:ENST00000414349.5:ENST00000443499.6:ENST00000444756.5:ENST00000497531.5:ENST00000443386.5:ENST00000446863.5:ENST00000444471.5:ENST00000481396.5:ENST00000423331.6:ENST00000485432.1:ENST00000471679.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	28	2	4.33899	4.3871199999999995	4.43525	0.0206616	0.00897296	0.110999	0.0849778
chr3	184340270	184340369	1582584	0	+	0.444444	(0.44,0.476]	chr3	163712	14	EXON_LNCRNA	EXON_LNCRNA:INTRON	FAM131A	ENSG00000175182.15	ENST00000450976.5:ENST00000418281.5:ENST00000340957.9:ENST00000433578.5:ENST00000418768.5:ENST00000639617.1:ENST00000497070.1:ENST00000383847.7:ENST00000453072.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	28	2	4.33899	4.3871199999999995	4.43525	0.0206616	0.00897296	0.110999	0.0849778
chr5	179830459	179830558	2561754	0	+	0.474747	(0.44,0.476]	chr5	245049	49	INTRON	INTRON	SQSTM1	ENSG00000161011.20	ENST00000389805.9:ENST00000510187.5:ENST00000360718.5:ENST00000466342.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	28	2	4.33899	4.3871199999999995	4.43525	0.0206616	0.00897296	0.110999	0.0849778
chr1	19133540	19133639	385985	0	-	0.292929	(0.28,0.32]	chr1	45834	41	INTRON	INTRON	UBR4	ENSG00000127481.15	ENST00000375254.8:ENST00000425413.5:ENST00000417040.1	protein_coding	protein_coding	protein_coding	protein_coding	1	73	2	3.00395	4.38709	5.77023	0.0101329	1.45293e-4	0.0850389	0.0104769
chr11	66071540	66071640	4807880	0	+	0.46	(0.44,0.476]	chr11	447330	3	INTRON	INTRON	PACS1	ENSG00000175115.13	ENST00000320580.9:ENST00000527224.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	95	2	2.46422	4.38697	6.30972	0.00282908	9.73578e-6	0.0491595	0.00240387
chr2	101296776	101296875	1199430	0	-	0.232323	[0,0.28]	chr2	128179	12	INTRON	INTRON	RNF149	ENSG00000163162.9	ENST00000424632.5:ENST00000295317.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	72	2	3.33854	4.38641	5.43428	0.00400834	0.00278022	0.0551303	0.0488412
chrX	74268979	74269078	7841368	0	-	0.393939	(0.378,0.408]	chrX	799728	66	INTRON	INTRON	FTX	ENSG00000230590.12	ENST00000603672.5:ENST00000430772.6:ENST00000602776.6:ENST00000638681.1:ENST00000652319.1:ENST00000661133.1:ENST00000652071.1:ENST00000602812.6:ENST00000651703.1:ENST00000653018.1:ENST00000658448.1:ENST00000662240.1:ENST00000652527.1:ENST00000651451.1:ENST00000657611.1:ENST00000660481.1:ENST00000659574.1:ENST00000661084.1:ENST00000662494.1:ENST00000670936.1:ENST00000602420.6:ENST00000658203.1:ENST00000638985.1:ENST00000691187.1:ENST00000603037.2:ENST00000687056.1:ENST00000654870.2:ENST00000652540.1:ENST00000652331.2:ENST00000652013.1:ENST00000657070.1:ENST00000665069.1:ENST00000651936.1:ENST00000652496.1:ENST00000653874.2:ENST00000661335.1:ENST00000664123.1:ENST00000658439.1:ENST00000666535.1:ENST00000652970.1:ENST00000423992.3:ENST00000665313.2:ENST00000651140.1:ENST00000660100.1:ENST00000693483.1:ENST00000656041.1:ENST00000657327.1:ENST00000664343.1:ENST00000656977.1:ENST00000671343.1:ENST00000659407.1:ENST00000671067.1:ENST00000660829.1:ENST00000671385.1	lncRNA	lncRNA	lncRNA	lncRNA	2	133	2	4.06133	4.38607	4.71081	1.0488e-4	1.02286e-6	0.00920724	5.79132e-4
chr6	145902058	145902158	3244469	0	-	0.32	(0.28,0.32]	chr6	301321	67	INTRON	INTRON	SHPRH	ENSG00000146414.17	ENST00000367505.6:ENST00000275233.12:ENST00000438092.6:ENST00000629427.2	protein_coding	protein_coding	protein_coding	protein_coding	1	67	2	3.17453	4.38584	5.59715	0.00429297	0.00123856	0.0599065	0.0322669
chr8	41529611	41529709	3742045	0	+	0.5	(0.476,0.515]	chr8	347870	5	UTR5	UTR5:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GINS4	ENSG00000147536.12	ENST00000520354.5:ENST00000520710.5:ENST00000520631.5:ENST00000520736.1:ENST00000518671.5:ENST00000523277.6:ENST00000276533.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	63	2	3.53362	4.385655	5.23769	0.00102391	5.17244e-4	0.029231300000000002	0.0203753
chr10	63504748	63504848	4635781	0	-	0.53	(0.515,0.57]	chr10	426242	389	INTRON	INTRON	JMJD1C	ENSG00000171988.20	ENST00000633035.1	protein_coding	processed_transcript	protein_coding	processed_transcript	0	27	2	4.08538	4.385529999999999	4.68568	0.0253843	0.00270027	0.12011	0.0479115
chr11	47544815	47544915	4950320	0	-	0.54	(0.515,0.57]	chr11	464246	202	INTRON	INTRON	CELF1	ENSG00000149187.19	ENST00000310513.10:ENST00000687097.1:ENST00000531165.5:ENST00000530151.5:ENST00000525841.5:ENST00000526419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.08538	4.385529999999999	4.68568	0.0253843	0.00270027	0.12011	0.0479115
chr6	43062190	43062287	2868719	0	+	0.546392	(0.515,0.57]	chr6	271640	2	INTRON	INTRON	KLC4	ENSG00000137171.15	ENST00000467906.5:ENST00000347162.10:ENST00000453940.6:ENST00000479632.5:ENST00000470728.5:ENST00000458460.6:ENST00000259708.7:ENST00000479388.5:ENST00000481499.5:ENST00000394056.6:ENST00000481888.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	27	2	4.08538	4.385529999999999	4.68568	0.0253843	0.00270027	0.12011	0.0479115
chr6	53535309	53535409	3108602	0	-	0.53	(0.515,0.57]	chr6	291140	115	INTRON	INTRON	GCLC	ENSG00000001084.13	ENST00000650454.1:ENST00000616923.5:ENST00000643939.1:ENST00000513939.6:ENST00000504525.1:ENST00000514004.5:ENST00000505197.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	27	2	4.08538	4.385529999999999	4.68568	0.0253843	0.00270027	0.12011	0.0479115
chr1	205104827	205104927	622258	0	-	0.31	(0.28,0.32]	chr1	74003	4	SS5_PROX	SS5_PROX:INTRON	RBBP5	ENSG00000117222.14	ENST00000367164.1:ENST00000264515.11	protein_coding	protein_coding	protein_coding	protein_coding	0	30	2	4.33765	4.3855249999999995	4.4334	0.039714	0.0163355	0.143072	0.109464
chr11	12866435	12866535	4741506	0	+	0.31	(0.28,0.32]	chr11	439091	10	INTRON	INTRON	TEAD1	ENSG00000187079.20	ENST00000527636.7:ENST00000334310.10:ENST00000527575.6	protein_coding	protein_coding	protein_coding	protein_coding	0	30	2	4.33765	4.3855249999999995	4.4334	0.039714	0.0163355	0.143072	0.109464
chr14	50484787	50484884	5890044	0	-	0.319588	(0.28,0.32]	chr14	559252	18	INTRON	INTRON	MAP4K5	ENSG00000012983.12	ENST00000682126.1:ENST00000013125.9:ENST00000557390.6:ENST00000554091.5:ENST00000557578.1:ENST00000555216.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	30	2	4.33765	4.3855249999999995	4.4334	0.039714	0.0163355	0.143072	0.109464
chr14	66548043	66548143	5757397	0	+	0.31	(0.28,0.32]	chr14	546625	383	INTRON	INTRON	GPHN	ENSG00000171723.16	ENST00000315266.9:ENST00000459628.5:ENST00000478722.6:ENST00000543237.5:ENST00000556633.5:ENST00000555668.5:ENST00000553936.5:ENST00000557654.5:ENST00000556020.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	30	2	4.33765	4.3855249999999995	4.4334	0.039714	0.0163355	0.143072	0.109464
chr18	26294409	26294504	6885176	0	+	0.294737	(0.28,0.32]	chr18	682477	5	INTRON	INTRON	TAF4B	ENSG00000141384.13	ENST00000269142.10:ENST00000578121.5:ENST00000418698.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	30	2	4.33765	4.3855249999999995	4.4334	0.039714	0.0163355	0.143072	0.109464
chr19	10917656	10917751	7015438	0	+	0.284211	(0.28,0.32]	chr19	697113	5	INTRON	INTRON	CARM1	ENSG00000142453.12	ENST00000327064.9:ENST00000590699.5:ENST00000344150.8:ENST00000586221.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	30	2	4.33765	4.3855249999999995	4.4334	0.039714	0.0163355	0.143072	0.109464
chr2	169594526	169594625	906572	0	+	0.292929	(0.28,0.32]	chr2	100021	14	INTRON	INTRON	PPIG	ENSG00000138398.17	ENST00000678088.1:ENST00000677392.1:ENST00000433207.6:ENST00000679324.1:ENST00000414307.6:ENST00000676508.1:ENST00000260970.8:ENST00000678695.1:ENST00000409714.7:ENST00000530152.5:ENST00000677750.1:ENST00000676557.1:ENST00000678721.1:ENST00000462903.6:ENST00000676756.1:ENST00000679107.1:ENST00000678499.1:ENST00000678638.1:ENST00000448752.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	30	2	4.33765	4.3855249999999995	4.4334	0.039714	0.0163355	0.143072	0.109464
chr3	43464824	43464924	1673862	0	-	0.29	(0.28,0.32]	chr3	170972	317	INTRON	INTRON	ANO10	ENSG00000160746.13	ENST00000292246.8:ENST00000350459.8:ENST00000396091.7:ENST00000414522.6:ENST00000451430.6:ENST00000448045.1	protein_coding	protein_coding	protein_coding	protein_coding	0	30	2	4.33765	4.3855249999999995	4.4334	0.039714	0.0163355	0.143072	0.109464
chr3	125249127	125249227	1805838	0	-	0.29	(0.28,0.32]	chr3	181414	144	INTRON	INTRON	ZNF148	ENSG00000163848.20	ENST00000360647.9:ENST00000468369.5:ENST00000484491.5:ENST00000492394.5:ENST00000485866.5:ENST00000497929.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	30	2	4.33765	4.3855249999999995	4.4334	0.039714	0.0163355	0.143072	0.109464
chr4	23133342	23133442	1929474	0	+	0.31	(0.28,0.32]	chr4	194009	57	INTRON	INTRON	ENSG00000248837	ENSG00000248837.7	ENST00000661585.1:ENST00000663348.1	lncRNA	lncRNA	lncRNA	lncRNA	0	30	2	4.33765	4.3855249999999995	4.4334	0.039714	0.0163355	0.143072	0.109464
chr6	36095086	36095186	2853740	0	+	0.3	(0.28,0.32]	chr6	269663	181	INTRON	INTRON	MAPK14	ENSG00000112062.11	ENST00000229795.7:ENST00000468133.5:ENST00000229794.9:ENST00000310795.8:ENST00000491957.5:ENST00000496250.5:ENST00000474429.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	30	2	4.33765	4.3855249999999995	4.4334	0.039714	0.0163355	0.143072	0.109464
chr7	10589764	10589864	3482677	0	-	0.31	(0.28,0.32]	chr7	325772	278	INTRON	INTRON	MGC4859	ENSG00000283117.1	ENST00000634803.1	lncRNA	lncRNA	lncRNA	lncRNA	0	30	2	4.33765	4.3855249999999995	4.4334	0.039714	0.0163355	0.143072	0.109464
chr8	99446457	99446557	3815627	0	+	0.29	(0.28,0.32]	chr8	353236	18	INTRON	INTRON	VPS13B	ENSG00000132549.20	ENST00000496144.5:ENST00000683334.1:ENST00000357162.7:ENST00000358544.7:ENST00000683619.1:ENST00000682153.1:ENST00000682358.1:ENST00000682145.1:ENST00000355155.6:ENST00000682234.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	30	2	4.33765	4.3855249999999995	4.4334	0.039714	0.0163355	0.143072	0.109464
chr8	143637913	143638013	3879863	0	+	0.3	(0.28,0.32]	chr8	356481	11	INTRON	INTRON	ZNF623	ENSG00000183309.12	ENST00000526926.6:ENST00000458270.2	protein_coding	protein_coding	protein_coding	protein_coding	0	30	2	4.33765	4.3855249999999995	4.4334	0.039714	0.0163355	0.143072	0.109464
chrX	135999155	135999248	7726792	0	+	0.311828	(0.28,0.32]	chrX	790619	3	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	SLC9A6	ENSG00000198689.13	ENST00000636347.1:ENST00000636092.1:ENST00000637195.1:ENST00000637234.1:ENST00000637581.1:ENST00000370701.6:ENST00000370698.7:ENST00000630721.3:ENST00000678163.1:ENST00000370695.8:ENST00000675856.1:ENST00000643775.1:ENST00000674809.1:ENST00000676043.1:ENST00000675550.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	30	2	4.33765	4.3855249999999995	4.4334	0.039714	0.0163355	0.143072	0.109464
chr1	6596455	6596554	368185	0	-	0.484848	(0.476,0.515]	chr1	43253	5	INTRON	INTRON	KLHL21	ENSG00000162413.17	ENST00000377663.3:ENST00000377658.8:ENST00000467612.5:ENST00000496707.5:ENST00000463043.1	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.24501	4.385505	4.526	0.0247713	0.00699701	0.12011	0.0754576
chr15	28188332	28188431	6122664	0	-	0.494949	(0.476,0.515]	chr15	583136	12	INTRON	INTRON	HERC2	ENSG00000128731.18	ENST00000261609.13:ENST00000650509.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	28	2	4.24501	4.385505	4.526	0.0247713	0.00699701	0.12011	0.0754576
chr2	135052685	135052785	872666	0	+	0.5	(0.476,0.515]	chr2	97720	2	SS5_PROX	SS5_PROX:INTRON	RAB3GAP1	ENSG00000115839.19	ENST00000539493.3:ENST00000688088.1:ENST00000693554.1:ENST00000690785.1:ENST00000689880.1:ENST00000264158.13:ENST00000686403.1:ENST00000690208.1:ENST00000691478.1:ENST00000686114.1:ENST00000685967.1:ENST00000442034.5:ENST00000425393.1:ENST00000687199.1:ENST00000691339.1:ENST00000688182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	28	2	4.24501	4.385505	4.526	0.0247713	0.00699701	0.12011	0.0754576
chr3	149082234	149082333	1840957	0	-	0.515152	(0.476,0.515]	chr3	185197	58	INTRON	INTRON	HLTF	ENSG00000071794.16	ENST00000310053.10:ENST00000465259.5:ENST00000392912.6:ENST00000494055.5	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.24501	4.385505	4.526	0.0247713	0.00699701	0.12011	0.0754576
chr7	6047439	6047533	3476128	0	-	0.489362	(0.476,0.515]	chr7	325224	2	SS3_PROX	SS3_PROX:INTRON	EIF2AK1	ENSG00000086232.13	ENST00000199389.11:ENST00000431744.5:ENST00000463213.5:ENST00000446699.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	28	2	4.24501	4.385505	4.526	0.0247713	0.00699701	0.12011	0.0754576
chr8	23533813	23533913	3715146	0	+	0.51	(0.476,0.515]	chr8	345217	20	INTRON	INTRON	SLC25A37	ENSG00000147454.14	ENST00000519973.6:ENST00000290075.10:ENST00000417331.6:ENST00000518881.5:ENST00000520654.1:ENST00000523930.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	28	2	4.24501	4.385505	4.526	0.0247713	0.00699701	0.12011	0.0754576
chr15	48731242	48731342	6165856	0	-	0.26	[0,0.28]	chr15	587554	15	INTRON	INTRON	CEP152	ENSG00000103995.14	ENST00000561245.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	0	32	2	4.07901	4.38546	4.69191	0.0494049	0.0269474	0.174117	0.123442
chr2	147966251	147966350	1242226	0	-	0.181818	[0,0.28]	chr2	131858	70	INTRON	INTRON	ORC4	ENSG00000115947.14	ENST00000392857.10:ENST00000264169.6:ENST00000536575.5:ENST00000535373.5:ENST00000540442.5:ENST00000461711.5:ENST00000496670.6:ENST00000490200.5:ENST00000416719.5:ENST00000457954.5:ENST00000440042.1:ENST00000495601.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	32	2	4.07901	4.38546	4.69191	0.0494049	0.0269474	0.174117	0.123442
chr6	10944642	10944741	2812350	0	+	0.191919	[0,0.28]	chr6	264672	15	INTRON	INTRON	SYCP2L	ENSG00000153157.13	ENST00000341041.8:ENST00000283141.11:ENST00000543878.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	32	2	4.07901	4.38546	4.69191	0.0494049	0.0269474	0.174117	0.123442
chr7	119854232	119854332	3629883	0	-	0.13	[0,0.28]	chr7	337335	530	INTRON	INTRON	LINC02476	ENSG00000225546.6	ENST00000660268.1:ENST00000431071.5:ENST00000426413.2	lncRNA	lncRNA	lncRNA	lncRNA	0	32	2	4.07901	4.38546	4.69191	0.0494049	0.0269474	0.174117	0.123442
chr7	158886053	158886146	3456430	0	+	0.139785	[0,0.28]	chr7	323167	11	INTRON	INTRON	DYNC2I1	ENSG00000126870.16	ENST00000407559.8:ENST00000444851.5:ENST00000467220.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	32	2	4.07901	4.38546	4.69191	0.0494049	0.0269474	0.174117	0.123442
chr16	74983304	74983403	6527278	0	-	0.50505	(0.476,0.515]	chr16	632164	43	INTRON	INTRON	WDR59	ENSG00000103091.15	ENST00000262144.11:ENST00000616369.4:ENST00000536050.5:ENST00000568323.5:ENST00000562331.5:ENST00000564859.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	104	2	2.97991	4.385375	5.79084	3.10641e-4	3.67793e-5	0.0162055	0.00485247
chr4	126549413	126549513	2236203	0	-	0.28	[0,0.28]	chr4	219023	839	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	1	74	2	3.60928	4.3852899999999995	5.1613	0.00866441	9.66382e-4	0.0787025	0.0285961
chr10	13108543	13108625	4395020	0	+	0.512195	(0.476,0.515]	chr10	405520	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	OPTN	ENSG00000123240.17	ENST00000263036.9:ENST00000378764.6:ENST00000487935.1:ENST00000378747.8:ENST00000482140.5:ENST00000378757.6:ENST00000378748.7:ENST00000378752.7:ENST00000430081.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	28	2	4.32915	4.3852150000000005	4.44128	0.0151924	0.0124637	0.0994339	0.0973643
chr10	74036903	74037003	4454890	0	+	0.5	(0.476,0.515]	chr10	411391	197	INTRON	INTRON	VCL	ENSG00000035403.18	ENST00000623461.3:ENST00000372755.7:ENST00000624354.3:ENST00000211998.10:ENST00000478896.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	28	2	4.32915	4.3852150000000005	4.44128	0.0151924	0.0124637	0.0994339	0.0973643
chr12	28191334	28191434	5100277	0	+	0.49	(0.476,0.515]	chr12	481896	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	CCDC91	ENSG00000123106.11	ENST00000540794.5:ENST00000538586.5:ENST00000536154.5:ENST00000535520.5:ENST00000539107.5:ENST00000544649.5:ENST00000545336.5:ENST00000536442.6:ENST00000544780.5:ENST00000543534.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	28	2	4.32915	4.3852150000000005	4.44128	0.0151924	0.0124637	0.0994339	0.0973643
chr12	121721454	121721554	5237548	0	+	0.5	(0.476,0.515]	chr12	497202	81	INTRON	INTRON	TMEM120B	ENSG00000188735.13	ENST00000449592.7:ENST00000342607.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	28	2	4.32915	4.3852150000000005	4.44128	0.0151924	0.0124637	0.0994339	0.0973643
chr15	55215695	55215795	6180154	0	-	0.5	(0.476,0.515]	chr15	589112	96	INTRON	INTRON	RAB27A	ENSG00000069974.16	ENST00000336787.6:ENST00000396307.6:ENST00000564609.5:ENST00000569493.5:ENST00000566877.5	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.32915	4.3852150000000005	4.44128	0.0151924	0.0124637	0.0994339	0.0973643
chr16	18904611	18904710	6457891	0	-	0.50505	(0.476,0.515]	chr16	622891	42	INTRON	INTRON	SMG1	ENSG00000157106.18	ENST00000446231.7:ENST00000532700.6:ENST00000569122.1:ENST00000563836.1	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.32915	4.3852150000000005	4.44128	0.0151924	0.0124637	0.0994339	0.0973643
chr17	12996985	12997085	6726262	0	-	0.48	(0.476,0.515]	chr17	660047	3	SS3_PROX	SS3_PROX:INTRON	ELAC2	ENSG00000006744.19	ENST00000338034.9:ENST00000484122.5:ENST00000480891.5:ENST00000395962.6:ENST00000487229.6:ENST00000465825.5:ENST00000426905.7:ENST00000584650.5:ENST00000491478.5:ENST00000492559.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	28	2	4.32915	4.3852150000000005	4.44128	0.0151924	0.0124637	0.0994339	0.0973643
chr17	46201988	46202088	6784964	0	-	0.5	(0.476,0.515]	chr17	669254	82	INTRON	INTRON	KANSL1	ENSG00000120071.15	ENST00000574590.6:ENST00000572904.6:ENST00000575318.6:ENST00000648792.1:ENST00000639150.1:ENST00000639375.1:ENST00000638269.1:ENST00000639356.1:ENST00000574655.6:ENST00000639099.1:ENST00000638902.1:ENST00000576739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	28	2	4.32915	4.3852150000000005	4.44128	0.0151924	0.0124637	0.0994339	0.0973643
chr17	82791082	82791182	6694598	0	+	0.51	(0.476,0.515]	chr17	654865	90	INTRON	INTRON	TBCD	ENSG00000141556.22	ENST00000682479.1:ENST00000682722.1:ENST00000684464.1:ENST00000684544.1:ENST00000681983.1:ENST00000684361.1:ENST00000683184.1:ENST00000683282.1:ENST00000684408.1:ENST00000355528.9:ENST00000683444.1:ENST00000684776.1:ENST00000683041.1:ENST00000684760.1:ENST00000684349.1:ENST00000682213.1:ENST00000683009.1:ENST00000682921.1:ENST00000682107.1:ENST00000539345.6:ENST00000684000.1:ENST00000684188.1:ENST00000684429.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	28	2	4.32915	4.3852150000000005	4.44128	0.0151924	0.0124637	0.0994339	0.0973643
chr2	207606417	207606517	1318189	0	-	0.5	(0.476,0.515]	chr2	138203	239	INTRON	INTRON	METTL21A	ENSG00000144401.14	ENST00000432416.5:ENST00000458426.5:ENST00000425132.5	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.32915	4.3852150000000005	4.44128	0.0151924	0.0124637	0.0994339	0.0973643
chr20	49863854	49863950	7285340	0	+	0.479167	(0.476,0.515]	chr20	741129	4	INTRON	INTRON	SLC9A8	ENSG00000197818.12	ENST00000417961.5:ENST00000361573.3	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.32915	4.3852150000000005	4.44128	0.0151924	0.0124637	0.0994339	0.0973643
chr3	31605540	31605640	1392127	0	+	0.49	(0.476,0.515]	chr3	145710	47	INTRON	INTRON	STT3B	ENSG00000163527.10	ENST00000453168.5:ENST00000295770.4:ENST00000423527.5:ENST00000462235.5:ENST00000436236.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	28	2	4.32915	4.3852150000000005	4.44128	0.0151924	0.0124637	0.0994339	0.0973643
chr5	112835665	112835764	2452885	0	+	0.494949	(0.476,0.515]	chr5	235011	1	INTRON	INTRON	APC	ENSG00000134982.17	ENST00000507379.5:ENST00000257430.9:ENST00000508624.5:ENST00000508376.6:ENST00000512211.6:ENST00000502371.2:ENST00000504915.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	28	2	4.32915	4.3852150000000005	4.44128	0.0151924	0.0124637	0.0994339	0.0973643
chr5	177488892	177488992	2777882	0	-	0.5	(0.476,0.515]	chr5	261801	1	SS5_PROX	SS5_PROX:INTRON	PDLIM7	ENSG00000196923.14	ENST00000355841.7:ENST00000359895.6:ENST00000493815.5:ENST00000486828.6:ENST00000393551.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	28	2	4.32915	4.3852150000000005	4.44128	0.0151924	0.0124637	0.0994339	0.0973643
chr8	73794711	73794807	3971413	0	-	0.510417	(0.476,0.515]	chr8	364211	2	INTRON	INTRON	ENSG00000258677:UBE2W	ENSG00000258677.2:ENSG00000104343.21	ENST00000358757.5:ENST00000523278.5:ENST00000602593.6:ENST00000517608.5:ENST00000650817.1:ENST00000422906.6:ENST00000419880.7:ENST00000651945.1:ENST00000519277.5:ENST00000519255.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	28	2	4.32915	4.3852150000000005	4.44128	0.0151924	0.0124637	0.0994339	0.0973643
chr7	119666665	119666765	3628003	0	-	0.39	(0.378,0.408]	chr7	337315	1662	INTRON	INTRON	LINC02476	ENSG00000225546.6	ENST00000660268.1	lncRNA	lncRNA	lncRNA	lncRNA	1	64	2	3.14892	4.38511	5.6213	0.00499984	9.58854e-5	0.0617433	0.00822887
chr13	52292450	52292548	5598503	0	-	0.357143	(0.35,0.378]	chr13	535227	5	INTRON	INTRON	TPTE2P2	ENSG00000272281.6	ENST00000605924.5:ENST00000403471.6	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	1	61	2	3.41139	4.384835	5.35828	0.00143263	0.00135282	0.0347139	0.0336321
chr2	85030244	85030343	820857	0	+	0.353535	(0.35,0.378]	chr2	91432	18	INTRON	INTRON	KCMF1	ENSG00000176407.18	ENST00000409785.9:ENST00000428691.5:ENST00000453448.1	protein_coding	protein_coding	protein_coding	protein_coding	1	66	2	3.21456	4.38478	5.555	0.00420814	1.71389e-4	0.0572185	0.0113605
chr1	11839352	11839449	25817	0	+	0.546392	(0.515,0.57]	chr1	2904	3	INTRON	INTRON	CLCN6	ENSG00000011021.23	ENST00000312413.10:ENST00000346436.11:ENST00000400892.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	27	2	4.17037	4.384755	4.59914	0.0139194	0.00616166	0.10247	0.0676501
chr16	74959049	74959149	6527029	0	-	0.52	(0.515,0.57]	chr16	632143	3	SS5_PROX	SS5_PROX:INTRON	WDR59	ENSG00000103091.15	ENST00000262144.11:ENST00000616369.4:ENST00000536050.5:ENST00000568462.5:ENST00000568323.5:ENST00000563111.2:ENST00000562331.5:ENST00000564859.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	27	2	4.17037	4.384755	4.59914	0.0139194	0.00616166	0.10247	0.0676501
chr19	1604959	1605059	7112656	0	-	0.54	(0.515,0.57]	chr19	714571	2	SS5_PROX	SS5_PROX:INTRON	ENSG00000267059:UQCR11	ENSG00000267059.2:ENSG00000127540.12	ENST00000585937.1:ENST00000591899.8:ENST00000593029.1:ENST00000589880.1:ENST00000585671.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	27	2	4.17037	4.384755	4.59914	0.0139194	0.00616166	0.10247	0.0676501
chr19	11647561	11647659	7018322	0	+	0.530612	(0.515,0.57]	chr19	697728	9	INTRON	INTRON	ENSG00000197332	ENSG00000197332.9	ENST00000666937.1:ENST00000344893.4	lncRNA	lncRNA	lncRNA	lncRNA	0	27	2	4.17037	4.384755	4.59914	0.0139194	0.00616166	0.10247	0.0676501
chr20	62847616	62847716	7361792	0	-	0.52	(0.515,0.57]	chr20	751095	11	INTRON	INTRON	TCFL5	ENSG00000101190.13	ENST00000335351.8:ENST00000217162.5	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.17037	4.384755	4.59914	0.0139194	0.00616166	0.10247	0.0676501
chr22	19398686	19398786	7554090	0	-	0.53	(0.515,0.57]	chr22	772292	2	INTRON	INTRON	HIRA:C22orf39	ENSG00000100084.14:ENSG00000242259.9	ENST00000263208.5:ENST00000340170.8:ENST00000509549.5:ENST00000464189.5:ENST00000452818.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	27	2	4.17037	4.384755	4.59914	0.0139194	0.00616166	0.10247	0.0676501
chr5	81434545	81434644	2663175	0	-	0.525253	(0.515,0.57]	chr5	252341	55	INTRON	INTRON	SSBP2	ENSG00000145687.17	ENST00000320672.9:ENST00000615665.4:ENST00000509053.5:ENST00000514493.5:ENST00000504985.5:ENST00000512923.5:ENST00000510060.5:ENST00000505980.5:ENST00000515395.5:ENST00000513785.5:ENST00000504136.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	27	2	4.17037	4.384755	4.59914	0.0139194	0.00616166	0.10247	0.0676501
chr5	111505925	111506022	2702736	0	-	0.546392	(0.515,0.57]	chr5	254412	2	SS5_PROX	SS5_PROX:INTRON	STARD4	ENSG00000164211.13	ENST00000296632.8:ENST00000512160.5:ENST00000511137.5:ENST00000502931.5:ENST00000505803.5:ENST00000502322.5:ENST00000509887.5:ENST00000511569.5:ENST00000511436.5:ENST00000510346.5:ENST00000455172.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	27	2	4.17037	4.384755	4.59914	0.0139194	0.00616166	0.10247	0.0676501
chr9	34004447	34004547	4245400	0	-	0.52	(0.515,0.57]	chr9	390473	52	INTRON	INTRON	UBAP2	ENSG00000137073.24	ENST00000379238.7:ENST00000683659.1:ENST00000682239.1:ENST00000683140.1:ENST00000682209.1:ENST00000681980.1:ENST00000360802.6:ENST00000683252.1:ENST00000684158.1:ENST00000682914.1:ENST00000683717.1:ENST00000379239.9:ENST00000683084.1:ENST00000684754.1:ENST00000629575.2:ENST00000684298.1:ENST00000412543.6:ENST00000480885.5:ENST00000459988.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	27	2	4.17037	4.384755	4.59914	0.0139194	0.00616166	0.10247	0.0676501
chr20	50088539	50088638	7353707	0	-	0.494949	(0.476,0.515]	chr20	749863	39	INTRON	INTRON	UBE2V1	ENSG00000244687.13	ENST00000340309.7:ENST00000371677.7:ENST00000415862.6:ENST00000557021.5:ENST00000617119.4:ENST00000625172.3:ENST00000396059.7:ENST00000371674.8:ENST00000371657.9:ENST00000483534.5:ENST00000492371.6:ENST00000486653.5:ENST00000490555.1:ENST00000493090.5:ENST00000467839.5:ENST00000472923.5:ENST00000432266.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	79	2	3.27004	4.384354999999999	5.49867	4.28561e-4	2.20887e-4	0.0189958	0.0130309
chr16	80995430	80995529	6530579	0	-	0.515152	(0.476,0.515]	chr16	632657	31	INTRON	INTRON	CMC2	ENSG00000103121.9	ENST00000219400.8:ENST00000563779.5:ENST00000486645.5:ENST00000570195.5:ENST00000566047.5:ENST00000561614.5:ENST00000569187.5:ENST00000570086.5:ENST00000564249.5:ENST00000565650.5:ENST00000567593.5:ENST00000568228.5:ENST00000565914.5:ENST00000565108.5:ENST00000565925.5:ENST00000564174.5:ENST00000565613.5:ENST00000569666.5:ENST00000562713.3:ENST00000562828.5:ENST00000630396.1:ENST00000565514.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	78	2	2.85177	4.38426	5.91675	0.00169916	6.46096e-5	0.0381936	0.00711194
chr8	141421766	141421860	3878681	0	+	0.585106	(0.57,1]	chr8	356216	5	UTR5	UTR5:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PTP4A3	ENSG00000184489.13	ENST00000520105.5:ENST00000521578.6:ENST00000523147.5:ENST00000329397.6:ENST00000349124.3:ENST00000680615.1:ENST00000681443.1	protein_coding	protein_coding	protein_coding	protein_coding	4	126	2	4.06304	4.384164999999999	4.70529	4.54556e-7	1.56762e-9	3.5553e-4	7.20966e-6
chr6	63665455	63665554	2883587	0	+	0.363636	(0.35,0.378]	chr6	273559	183	INTRON	INTRON	PHF3	ENSG00000118482.12	ENST00000262043.8:ENST00000506783.5:ENST00000481385.6:ENST00000515594.5:ENST00000494284.6:ENST00000509876.5:ENST00000509330.5:ENST00000393387.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	99	2	2.93467	4.384145	5.83362	3.132e-4	2.04087e-4	0.0159213	0.0129859
chr1	32223210	32223291	64475	0	+	0.419753	(0.408,0.44]	chr1	8264	2	INTRON	INTRON	EIF3I	ENSG00000084623.12	ENST00000677701.1:ENST00000677760.1:ENST00000676801.1:ENST00000677772.1:ENST00000677202.1:ENST00000677844.1:ENST00000373586.2:ENST00000677676.1:ENST00000678689.1:ENST00000676679.1:ENST00000677198.1:ENST00000678150.1:ENST00000678063.1:ENST00000676554.1:ENST00000676998.1:ENST00000677711.2:ENST00000678842.1:ENST00000678968.1:ENST00000677378.1:ENST00000677640.1:ENST00000678534.1:ENST00000679290.1:ENST00000678889.1:ENST00000677767.1:ENST00000474371.2:ENST00000677540.1:ENST00000676837.1:ENST00000678420.1:ENST00000678162.1:ENST00000677183.1:ENST00000678711.1:ENST00000678883.1:ENST00000677353.1:ENST00000677053.1:ENST00000677580.1:ENST00000679270.1:ENST00000355082.10:ENST00000489353.6:ENST00000471486.6:ENST00000676957.1:ENST00000483517.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	28	2	4.33238	4.3840900000000005	4.4358	0.0218901	0.00893097	0.11491	0.0849778
chr1	235311721	235311821	663698	0	-	0.42	(0.408,0.44]	chr1	78552	506	INTRON	INTRON	ARID4B	ENSG00000054267.22	ENST00000349213.7:ENST00000366603.6:ENST00000264183.9:ENST00000421364.5:ENST00000491632.5:ENST00000418304.1:ENST00000466653.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	28	2	4.33238	4.3840900000000005	4.4358	0.0218901	0.00893097	0.11491	0.0849778
chr16	67762038	67762138	6505232	0	-	0.43	(0.408,0.44]	chr16	629633	2	SS5_PROX	SS5_PROX:INTRON	RANBP10	ENSG00000141084.12	ENST00000317506.8:ENST00000448631.6:ENST00000602506.5:ENST00000602677.5:ENST00000602525.5:ENST00000602638.5:ENST00000602815.5:ENST00000602887.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	28	2	4.33238	4.3840900000000005	4.4358	0.0218901	0.00893097	0.11491	0.0849778
chr17	35646252	35646351	6600140	0	+	0.424242	(0.408,0.44]	chr17	642300	39	INTRON	INTRON	AP2B1	ENSG00000006125.18	ENST00000616784.4:ENST00000621914.4:ENST00000620039.4:ENST00000616681.4:ENST00000621668.4:ENST00000610402.5:ENST00000612035.4:ENST00000614600.4:ENST00000612116.5:ENST00000618940.4:ENST00000619183.1:ENST00000588116.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	28	2	4.33238	4.3840900000000005	4.4358	0.0218901	0.00893097	0.11491	0.0849778
chr17	37190040	37190136	6760819	0	-	0.416667	(0.408,0.44]	chr17	664720	12	INTRON	INTRON	ACACA	ENSG00000278540.5	ENST00000616317.5:ENST00000614428.4:ENST00000612895.4:ENST00000619546.4:ENST00000617649.4:ENST00000619245.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	28	2	4.33238	4.3840900000000005	4.4358	0.0218901	0.00893097	0.11491	0.0849778
chr17	39464312	39464412	6607016	0	+	0.44	(0.408,0.44]	chr17	643258	8	INTRON	INTRON	CDK12	ENSG00000167258.15	ENST00000447079.6:ENST00000584632.5:ENST00000430627.6	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.33238	4.3840900000000005	4.4358	0.0218901	0.00893097	0.11491	0.0849778
chr2	201273042	201273142	983059	0	+	0.42	(0.408,0.44]	chr2	105584	1	SS5_PROX	SS5_PROX:INTRON	CASP8	ENSG00000064012.24	ENST00000392263.6:ENST00000432109.6:ENST00000696067.1:ENST00000264275.9:ENST00000450491.6:ENST00000440732.6:ENST00000392258.7:ENST00000447616.6:ENST00000413726.6:ENST00000358485.8:ENST00000696087.1:ENST00000696068.1:ENST00000696085.1:ENST00000339403.6:ENST00000323492.11:ENST00000673742.1:ENST00000696069.1:ENST00000444430.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	28	2	4.33238	4.3840900000000005	4.4358	0.0218901	0.00893097	0.11491	0.0849778
chr3	47107812	47107911	1681034	0	-	0.424242	(0.408,0.44]	chr3	171593	13	INTRON	INTRON	SETD2	ENSG00000181555.22	ENST00000691544.1:ENST00000638947.2:ENST00000686876.1:ENST00000431180.5:ENST00000409792.4:ENST00000330022.11:ENST00000686773.1:ENST00000685005.1:ENST00000690461.1:ENST00000685505.1:ENST00000692883.1:ENST00000693321.1:ENST00000688290.1:ENST00000691902.1:ENST00000690157.1:ENST00000692362.1:ENST00000445387.5:ENST00000685399.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	28	2	4.33238	4.3840900000000005	4.4358	0.0218901	0.00893097	0.11491	0.0849778
chr3	177069493	177069592	1871151	0	-	0.434343	(0.408,0.44]	chr3	187367	41	INTRON	INTRON	TBL1XR1	ENSG00000177565.18	ENST00000457928.7:ENST00000430069.5:ENST00000673974.1:ENST00000631253.2:ENST00000352800.10:ENST00000422442.6:ENST00000428970.5:ENST00000424913.5:ENST00000437738.5:ENST00000431421.5:ENST00000635794.1:ENST00000630796.2:ENST00000450267.5:ENST00000630833.2:ENST00000431674.5:ENST00000422066.5:ENST00000443315.5:ENST00000627825.2:ENST00000427349.5:ENST00000413084.5:ENST00000637137.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	28	2	4.33238	4.3840900000000005	4.4358	0.0218901	0.00893097	0.11491	0.0849778
chr4	73214683	73214783	2160385	0	-	0.44	(0.408,0.44]	chr4	212794	368	INTRON	INTRON	ANKRD17	ENSG00000132466.20	ENST00000358602.9:ENST00000558247.5:ENST00000330838.10:ENST00000509867.6:ENST00000561029.1:ENST00000559367.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	28	2	4.33238	4.3840900000000005	4.4358	0.0218901	0.00893097	0.11491	0.0849778
chr5	77448860	77448960	2644627	0	-	0.44	(0.408,0.44]	chr5	251460	75	INTRON	INTRON	WDR41	ENSG00000164253.14	ENST00000296679.9:ENST00000502528.5:ENST00000515253.5:ENST00000507029.5:ENST00000511630.6:ENST00000507654.5:ENST00000509701.5:ENST00000511791.1:ENST00000505129.5:ENST00000506307.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	28	2	4.33238	4.3840900000000005	4.4358	0.0218901	0.00893097	0.11491	0.0849778
chr7	4699659	4699759	3270089	0	+	0.42	(0.408,0.44]	chr7	303884	164	INTRON	INTRON	FOXK1	ENSG00000164916.11	ENST00000328914.5	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.33238	4.3840900000000005	4.4358	0.0218901	0.00893097	0.11491	0.0849778
chr7	50344430	50344530	3317102	0	+	0.41	(0.408,0.44]	chr7	308261	156	INTRON	INTRON	IKZF1	ENSG00000185811.20	ENST00000642219.1:ENST00000645066.1:ENST00000646110.1:ENST00000331340.8:ENST00000413698.5:ENST00000349824.8:ENST00000343574.9:ENST00000357364.8:ENST00000440768.6:ENST00000346667.8:ENST00000615491.4:ENST00000359197.9:ENST00000439701.2:ENST00000438033.5:ENST00000492782.6:ENST00000462201.1:ENST00000471793.1:ENST00000426121.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	28	2	4.33238	4.3840900000000005	4.4358	0.0218901	0.00893097	0.11491	0.0849778
chr21	31692630	31692711	7437420	0	-	0.283951	(0.28,0.32]	chr21	758628	2	SS3_PROX	SS3_PROX:INTRON	SCAF4	ENSG00000156304.15	ENST00000286835.12:ENST00000399804.5:ENST00000434667.3:ENST00000467731.1:ENST00000472318.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	70	2	3.77927	4.383995	4.98872	0.00838468	3.56863e-4	0.0774402	0.0169148
chr1	89849556	89849656	159811	0	+	0.27	[0,0.28]	chr1	17285	25	INTRON	INTRON	LRRC8D	ENSG00000171492.14	ENST00000525774.5:ENST00000337338.9:ENST00000394593.7:ENST00000532201.5:ENST00000414841.1:ENST00000527156.1:ENST00000441269.2	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.29536	4.3839500000000005	4.47254	0.0590175	0.020991	0.167915	0.122348
chr1	167939345	167939445	248515	0	+	0.22	[0,0.28]	chr1	29536	17	INTRON	INTRON	DCAF6	ENSG00000143164.16	ENST00000450548.5:ENST00000470919.5:ENST00000432587.6:ENST00000367843.7:ENST00000470721.5:ENST00000367840.4:ENST00000312263.10:ENST00000455334.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	31	2	4.29536	4.3839500000000005	4.47254	0.0590175	0.020991	0.167915	0.122348
chr12	122599037	122599137	5241356	0	+	0.24	[0,0.28]	chr12	497814	7	INTRON	INTRON	KNTC1	ENSG00000184445.12	ENST00000450485.6:ENST00000333479.12:ENST00000535186.1:ENST00000423927.2:ENST00000545065.1:ENST00000377192.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	31	2	4.29536	4.3839500000000005	4.47254	0.0590175	0.020991	0.167915	0.122348
chr12	124792727	124792827	5445861	0	-	0.27	[0,0.28]	chr12	521236	3	SS3_PROX	SS3_PROX:INTRON	SCARB1	ENSG00000073060.17	ENST00000339570.9:ENST00000261693.11:ENST00000679605.1:ENST00000681686.1:ENST00000680926.1:ENST00000680556.1:ENST00000680982.1:ENST00000680596.1:ENST00000681555.1:ENST00000415380.6:ENST00000681117.1:ENST00000681499.1:ENST00000538291.5:ENST00000546215.5:ENST00000535005.5:ENST00000679955.1:ENST00000544327.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	31	2	4.29536	4.3839500000000005	4.47254	0.0590175	0.020991	0.167915	0.122348
chr16	53136882	53136981	6351541	0	+	0.272727	[0,0.28]	chr16	609680	52	INTRON	INTRON	CHD9	ENSG00000177200.18	ENST00000447540.6:ENST00000566029.5:ENST00000615216.4:ENST00000565832.5:ENST00000564845.5:ENST00000563410.1	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.29536	4.3839500000000005	4.47254	0.0590175	0.020991	0.167915	0.122348
chr2	32501125	32501212	732276	0	+	0.206897	[0,0.28]	chr2	84529	7	INTRON	INTRON	BIRC6	ENSG00000115760.15	ENST00000421745.7:ENST00000648282.1	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.29536	4.3839500000000005	4.47254	0.0590175	0.020991	0.167915	0.122348
chr3	17479389	17479489	1627782	0	-	0.28	[0,0.28]	chr3	168186	505	INTRON	INTRON	TBC1D5	ENSG00000131374.15	ENST00000253692.11:ENST00000696125.1:ENST00000414318.2:ENST00000429383.8:ENST00000446818.6:ENST00000415814.6:ENST00000452492.6:ENST00000412981.5:ENST00000428355.5:ENST00000425944.5:ENST00000430169.5:ENST00000445294.5:ENST00000414349.5:ENST00000443499.6:ENST00000444756.5:ENST00000497531.5:ENST00000443386.5:ENST00000507877.5:ENST00000446863.5:ENST00000434420.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	31	2	4.29536	4.3839500000000005	4.47254	0.0590175	0.020991	0.167915	0.122348
chr3	155839434	155839534	1844196	0	-	0.23	[0,0.28]	chr3	185550	50	INTRON	INTRON	SLC33A1	ENSG00000169359.16	ENST00000643144.2:ENST00000359479.7:ENST00000468581.2:ENST00000646424.1:ENST00000644094.1:ENST00000642438.1:ENST00000644855.1:ENST00000475842.5:ENST00000496772.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	31	2	4.29536	4.3839500000000005	4.47254	0.0590175	0.020991	0.167915	0.122348
chr5	65996163	65996263	2371548	0	+	0.28	[0,0.28]	chr5	228504	9	INTRON	INTRON	ERBIN	ENSG00000112851.15	ENST00000380943.6:ENST00000416865.6:ENST00000380935.5:ENST00000284037.10:ENST00000380938.6:ENST00000511297.5:ENST00000506030.5:ENST00000508515.1	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.29536	4.3839500000000005	4.47254	0.0590175	0.020991	0.167915	0.122348
chr7	135480891	135480990	3648669	0	-	0.252525	[0,0.28]	chr7	339187	421	INTRON	INTRON	CNOT4	ENSG00000080802.20	ENST00000541284.6:ENST00000451834.5:ENST00000423368.6:ENST00000361528.8:ENST00000428680.6:ENST00000315544.6:ENST00000491203.5:ENST00000498534.5:ENST00000465721.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	31	2	4.29536	4.3839500000000005	4.47254	0.0590175	0.020991	0.167915	0.122348
chr12	24910067	24910167	5297522	0	-	0.46	(0.44,0.476]	chr12	503884	71	INTRON	INTRON	BCAT1	ENSG00000060982.15	ENST00000261192.12:ENST00000342945.9:ENST00000539780.5:ENST00000546285.1	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.23755	4.383945	4.53034	0.0263357	0.00672609	0.122221	0.0738715
chr17	3943060	3943145	6708644	0	-	0.447059	(0.44,0.476]	chr17	657160	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ATP2A3	ENSG00000074370.18	ENST00000309890.11:ENST00000397041.8:ENST00000397035.7:ENST00000352011.7:ENST00000359983.7:ENST00000397043.7:ENST00000572694.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	28	2	4.23755	4.383945	4.53034	0.0263357	0.00672609	0.122221	0.0738715
chr17	29399853	29399952	6585730	0	+	0.454545	(0.44,0.476]	chr17	640373	85	INTRON	INTRON	ENSG00000266111:TAOK1	ENSG00000266111.2:ENSG00000160551.12	ENST00000584958.2:ENST00000261716.8:ENST00000583121.5:ENST00000587277.1:ENST00000536202.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	0	28	2	4.23755	4.383945	4.53034	0.0263357	0.00672609	0.122221	0.0738715
chr20	32398214	32398314	7256225	0	+	0.45	(0.44,0.476]	chr20	737076	258	INTRON	INTRON	ASXL1	ENSG00000171456.21	ENST00000651418.1:ENST00000375687.10:ENST00000613218.4:ENST00000644587.1:ENST00000620121.4:ENST00000646985.1:ENST00000643168.1:ENST00000306058.9:ENST00000645688.1:ENST00000470145.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	28	2	4.23755	4.383945	4.53034	0.0263357	0.00672609	0.122221	0.0738715
chr4	953949	954044	1908683	0	+	0.442105	(0.44,0.476]	chr4	191330	2	INTRON	INTRON	TMEM175	ENSG00000127419.17	ENST00000513952.5:ENST00000515492.5:ENST00000264771.9:ENST00000452360.6:ENST00000509508.5:ENST00000515876.5:ENST00000515740.5:ENST00000438836.6:ENST00000508204.5:ENST00000510493.5:ENST00000622959.3:ENST00000506669.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	28	2	4.23755	4.383945	4.53034	0.0263357	0.00672609	0.122221	0.0738715
chr4	24553538	24553636	2118698	0	-	0.459184	(0.44,0.476]	chr4	209230	42	INTRON	INTRON	DHX15	ENSG00000109606.13	ENST00000336812.5	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.23755	4.383945	4.53034	0.0263357	0.00672609	0.122221	0.0738715
chr4	150788594	150788693	2269465	0	-	0.464646	(0.44,0.476]	chr4	220739	264	INTRON	INTRON	LRBA	ENSG00000198589.14	ENST00000357115.9:ENST00000651943.2:ENST00000510413.5:ENST00000509835.5:ENST00000651695.1:ENST00000651035.1:ENST00000507224.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	28	2	4.23755	4.383945	4.53034	0.0263357	0.00672609	0.122221	0.0738715
chr7	137972371	137972471	3655444	0	-	0.47	(0.44,0.476]	chr7	339370	386	INTRON	INTRON	CREB3L2	ENSG00000182158.16	ENST00000330387.11:ENST00000456390.5:ENST00000452463.5	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.23755	4.383945	4.53034	0.0263357	0.00672609	0.122221	0.0738715
chr16	396724	396812	6272010	0	+	0.613636	(0.57,1]	chr16	598461	1	UTR5	UTR5:EXON_MRNA	NME4	ENSG00000103202.13	ENST00000397722.5:ENST00000454619.5	protein_coding	protein_coding	protein_coding	protein_coding	1	40	2	3.42323	4.383925	5.34462	8.58388e-4	2.48598e-5	0.0267428	0.00391773
chr7	123684319	123684418	3632003	0	-	0.323232	(0.32,0.35]	chr7	337525	25	UTR3	UTR3:EXON_MRNA	WASL	ENSG00000106299.8	ENST00000223023.5	protein_coding	protein_coding	protein_coding	protein_coding	5	130	2	2.40692	4.3839	6.36088	0.00103155	2.93539e-5	0.0294094	0.00449807
chr9	135937038	135937135	4372313	0	-	0.608247	(0.57,1]	chr9	402502	32	INTRON	INTRON	UBAC1	ENSG00000130560.9	ENST00000371756.4:ENST00000489050.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	40	2	3.56369	4.383825	5.20396	4.26536e-4	5.65393e-5	0.0189958	0.00613846
chr1	110957474	110957573	522172	0	-	0.272727	[0,0.28]	chr1	61360	43	INTRON	INTRON	LRIF1	ENSG00000121931.16	ENST00000369763.5:ENST00000485275.2	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.38376	4.383815	4.38387	0.0501911	0.0258536	0.156383	0.133676
chr1	184864969	184865069	601952	0	-	0.27	[0,0.28]	chr1	71742	327	INTRON	INTRON	NIBAN1	ENSG00000135842.17	ENST00000367511.4:ENST00000487074.5:ENST00000461167.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	31	2	4.38376	4.383815	4.38387	0.0501911	0.0258536	0.156383	0.133676
chr12	95506245	95506344	5193345	0	+	0.222222	[0,0.28]	chr12	491171	17	INTRON	INTRON	METAP2	ENSG00000111142.14	ENST00000535095.5:ENST00000546753.5:ENST00000261220.13:ENST00000323666.10:ENST00000550777.5:ENST00000551840.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	31	2	4.38376	4.383815	4.38387	0.0501911	0.0258536	0.156383	0.133676
chr13	113201213	113201311	5651984	0	-	0.244898	[0,0.28]	chr13	538624	3	INTRON	INTRON	PCID2	ENSG00000126226.22	ENST00000337344.9:ENST00000622406.4:ENST00000375479.6:ENST00000375477.5:ENST00000246505.9:ENST00000375459.5:ENST00000375457.2:ENST00000475433.5:ENST00000480971.5:ENST00000484641.6:ENST00000491548.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	31	2	4.38376	4.383815	4.38387	0.0501911	0.0258536	0.156383	0.133676
chr15	60439117	60439217	6195596	0	-	0.28	[0,0.28]	chr15	590407	14	EXON_MRNA	EXON_MRNA:INTRON	ICE2	ENSG00000128915.12	ENST00000261520.9:ENST00000558181.5:ENST00000558121.5:ENST00000561124.1:ENST00000561328.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	31	2	4.38376	4.383815	4.38387	0.0501911	0.0258536	0.156383	0.133676
chr15	63784350	63784449	6200409	0	-	0.242424	[0,0.28]	chr15	591445	34	INTRON	INTRON	HERC1	ENSG00000103657.14	ENST00000443617.7:ENST00000561400.1:ENST00000559886.1:ENST00000558532.1:ENST00000560462.1:ENST00000560316.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	31	2	4.38376	4.383815	4.38387	0.0501911	0.0258536	0.156383	0.133676
chr18	2563596	2563696	6942544	0	-	0.23	[0,0.28]	chr18	686666	4	SS5_PROX	SS5_PROX:INTRON	METTL4	ENSG00000101574.15	ENST00000319888.10:ENST00000574538.2:ENST00000573134.1:ENST00000577166.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	31	2	4.38376	4.383815	4.38387	0.0501911	0.0258536	0.156383	0.133676
chr2	44501057	44501157	766732	0	+	0.23	[0,0.28]	chr2	86780	439	INTRON	INTRON	CAMKMT	ENSG00000143919.15	ENST00000378494.8:ENST00000402247.5:ENST00000407131.5:ENST00000428993.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	31	2	4.38376	4.383815	4.38387	0.0501911	0.0258536	0.156383	0.133676
chr2	45542931	45543031	1112665	0	-	0.27	[0,0.28]	chr2	119293	542	INTRON	INTRON	SRBD1	ENSG00000068784.13	ENST00000263736.5:ENST00000475073.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	31	2	4.38376	4.383815	4.38387	0.0501911	0.0258536	0.156383	0.133676
chr2	202280680	202280778	985066	0	+	0.27551	[0,0.28]	chr2	105723	20	INTRON	INTRON	NOP58	ENSG00000055044.11	ENST00000488403.5:ENST00000426814.5:ENST00000264279.10:ENST00000472050.5:ENST00000467734.5:ENST00000492688.5:ENST00000478941.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	31	2	4.38376	4.383815	4.38387	0.0501911	0.0258536	0.156383	0.133676
chr21	37499637	37499736	7407570	0	+	0.191919	[0,0.28]	chr21	754944	30	INTRON	INTRON	DYRK1A	ENSG00000157540.22	ENST00000646523.1:ENST00000647425.1:ENST00000647188.2:ENST00000647504.1:ENST00000644942.1:ENST00000338785.8:ENST00000643624.1:ENST00000398960.7:ENST00000646548.1:ENST00000645424.1:ENST00000643854.1:ENST00000642309.1:ENST00000645774.1:ENST00000398956.2:ENST00000643808.1:ENST00000644367.1:ENST00000646224.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	31	2	4.38376	4.383815	4.38387	0.0501911	0.0258536	0.156383	0.133676
chr3	113009884	113009984	1771203	0	-	0.24	[0,0.28]	chr3	179294	3	SS3_PROX	SS3_PROX:INTRON	NEPRO	ENSG00000163608.15	ENST00000383675.6:ENST00000314400.10:ENST00000486271.5:ENST00000472637.5:ENST00000469809.5:ENST00000472705.5:ENST00000473284.5:ENST00000469169.5:ENST00000489848.5:ENST00000462295.5:ENST00000461381.5:ENST00000482229.1:ENST00000472762.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	31	2	4.38376	4.383815	4.38387	0.0501911	0.0258536	0.156383	0.133676
chr5	131430266	131430358	2717080	0	-	0.228261	[0,0.28]	chr5	255434	7	INTRON	INTRON	RAPGEF6	ENSG00000158987.22	ENST00000509018.6:ENST00000671916.1:ENST00000512611.5:ENST00000507093.5:ENST00000296859.10:ENST00000627212.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	31	2	4.38376	4.383815	4.38387	0.0501911	0.0258536	0.156383	0.133676
chr5	157857229	157857329	2758636	0	-	0.24	[0,0.28]	chr5	260304	393	INTRON	INTRON	CLINT1	ENSG00000113282.14	ENST00000523094.5:ENST00000411809.7:ENST00000530742.5:ENST00000523908.5	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.38376	4.383815	4.38387	0.0501911	0.0258536	0.156383	0.133676
chr7	86879974	86880073	3563601	0	-	0.222222	[0,0.28]	chr7	332053	32	UTR3	UTR3:EXON_MRNA	ELAPOR2	ENSG00000164659.15	ENST00000450689.7:ENST00000444627.5:ENST00000394714.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	31	2	4.38376	4.383815	4.38387	0.0501911	0.0258536	0.156383	0.133676
chr7	130169200	130169300	3638382	0	-	0.24	[0,0.28]	chr7	338345	23	INTRON	INTRON	TMEM209	ENSG00000146842.17	ENST00000397622.7:ENST00000473456.5:ENST00000462753.5	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.38376	4.383815	4.38387	0.0501911	0.0258536	0.156383	0.133676
chr7	155709076	155709176	3452550	0	+	0.28	[0,0.28]	chr7	322690	13	INTRON	INTRON	RBM33	ENSG00000184863.11	ENST00000401878.8:ENST00000307403.6:ENST00000440108.5:ENST00000392761.3:ENST00000486747.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	31	2	4.38376	4.383815	4.38387	0.0501911	0.0258536	0.156383	0.133676
chr20	38943021	38943120	7272590	0	+	0.484848	(0.476,0.515]	chr20	739060	5	INTRON	INTRON	FAM83D	ENSG00000101447.15	ENST00000619304.4:ENST00000619850.2	protein_coding	protein_coding	protein_coding	protein_coding	1	65	2	3.70882	4.383645	5.05847	0.00108081	4.74495e-4	0.0300133	0.0201638
chr1	93288266	93288365	508825	0	-	0.454545	(0.44,0.476]	chr1	59951	148	INTRON	INTRON	CCDC18-AS1	ENSG00000223745.8	ENST00000413606.5:ENST00000457025.5:ENST00000451302.6:ENST00000668257.1:ENST00000446528.6:ENST00000415150.5:ENST00000455474.5:ENST00000447577.5:ENST00000442860.5:ENST00000414430.5:ENST00000429859.5:ENST00000424517.3:ENST00000427669.5:ENST00000661111.1	lncRNA	lncRNA	lncRNA	lncRNA	0	28	2	4.33346	4.383615	4.43377	0.0162803	0.0120349	0.101453	0.0962115
chr10	32014210	32014309	4590376	0	-	0.474747	(0.44,0.476]	chr10	423184	23	INTRON	INTRON	KIF5B	ENSG00000170759.11	ENST00000302418.5	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.33346	4.383615	4.43377	0.0162803	0.0120349	0.101453	0.0962115
chr14	35089657	35089757	5691989	0	+	0.46	(0.44,0.476]	chr14	541385	17	INTRON	INTRON	FAM177A1	ENSG00000151327.13	ENST00000555260.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	0	28	2	4.33346	4.383615	4.43377	0.0162803	0.0120349	0.101453	0.0962115
chr17	51264284	51264384	6627612	0	+	0.45	(0.44,0.476]	chr17	647342	5	INTRON	INTRON	UTP18	ENSG00000011260.14	ENST00000225298.12	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.33346	4.383615	4.43377	0.0162803	0.0120349	0.101453	0.0962115
chr19	11143996	11144096	7136849	0	-	0.45	(0.44,0.476]	chr19	719780	62	INTRON	INTRON	SPC24	ENSG00000161888.12	ENST00000585567.5	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.33346	4.383615	4.43377	0.0162803	0.0120349	0.101453	0.0962115
chr2	235539135	235539235	1041788	0	+	0.46	(0.44,0.476]	chr2	111222	142	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1:ENST00000402604.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	28	2	4.33346	4.383615	4.43377	0.0162803	0.0120349	0.101453	0.0962115
chr22	31644017	31644117	7578748	0	-	0.45	(0.44,0.476]	chr22	775599	57	INTRON	INTRON	PISD	ENSG00000241878.12	ENST00000460723.5:ENST00000439502.7:ENST00000437808.5:ENST00000435900.5:ENST00000474017.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	28	2	4.33346	4.383615	4.43377	0.0162803	0.0120349	0.101453	0.0962115
chr3	69806242	69806342	1449046	0	+	0.47	(0.44,0.476]	chr3	152789	68	INTRON	INTRON	MITF	ENSG00000187098.18	ENST00000687384.1:ENST00000693031.1:ENST00000352241.9:ENST00000642352.1:ENST00000495741.1:ENST00000429090.5:ENST00000433517.5:ENST00000472437.5:ENST00000448226.9:ENST00000689390.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	28	2	4.33346	4.383615	4.43377	0.0162803	0.0120349	0.101453	0.0962115
chr6	157897498	157897597	3016511	0	+	0.474747	(0.44,0.476]	chr6	281391	1	INTRON	INTRON	SNX9	ENSG00000130340.17	ENST00000680863.1:ENST00000679814.1:ENST00000680464.1:ENST00000681186.1:ENST00000679732.1:ENST00000681183.1:ENST00000681534.1:ENST00000681651.1:ENST00000680089.1:ENST00000680078.1:ENST00000680974.1:ENST00000680095.1:ENST00000680015.1:ENST00000681138.1:ENST00000392185.8:ENST00000679790.1:ENST00000680495.1:ENST00000679691.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	28	2	4.33346	4.383615	4.43377	0.0162803	0.0120349	0.101453	0.0962115
chr7	152344755	152344854	3680380	0	-	0.464646	(0.44,0.476]	chr7	341654	1	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000682301.1:ENST00000452749.2:ENST00000680867.1:ENST00000683800.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	28	2	4.33346	4.383615	4.43377	0.0162803	0.0120349	0.101453	0.0962115
chr1	207345156	207345256	303511	0	+	0.33	(0.32,0.35]	chr1	34926	42	INTRON	INTRON	CD55	ENSG00000196352.18	ENST00000695822.1:ENST00000695823.1:ENST00000695826.1:ENST00000695825.1:ENST00000695827.1:ENST00000645323.1:ENST00000391921.9:ENST00000367064.9:ENST00000314754.12:ENST00000644836.1:ENST00000476590.1:ENST00000465534.5:ENST00000618707.2:ENST00000635614.2:ENST00000695831.1:ENST00000634386.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	69	2	3.03597	4.383405	5.73084	0.00832487	1.07676e-4	0.0774402	0.00878438
chr3	93923894	93923994	1753688	0	-	0.39	(0.378,0.408]	chr3	177811	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PROS1	ENSG00000184500.16	ENST00000394236.9:ENST00000648381.1:ENST00000648853.1:ENST00000650591.1:ENST00000348974.5:ENST00000647936.1:ENST00000407433.6:ENST00000649103.1:ENST00000472684.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	60	2	3.64529	4.383285	5.12128	0.00251746	4.71767e-4	0.0446195	0.0196294
chr10	87936338	87936437	4483667	0	+	0.313131	(0.28,0.32]	chr10	412595	27	INTRON	INTRON	PTEN	ENSG00000171862.12	ENST00000688308.1:ENST00000693560.1:ENST00000371953.8:ENST00000688158.1:ENST00000686459.1:ENST00000688922.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	30	2	4.2432	4.382765	4.52233	0.0479043	0.0129279	0.153019	0.0990564
chr12	120866519	120866619	5435529	0	-	0.31	(0.28,0.32]	chr12	519663	310	INTRON	INTRON	SPPL3	ENSG00000157837.16	ENST00000353487.7:ENST00000536996.5:ENST00000543608.5:ENST00000543854.5	protein_coding	protein_coding	protein_coding	protein_coding	0	30	2	4.2432	4.382765	4.52233	0.0479043	0.0129279	0.153019	0.0990564
chr17	2503822	2503921	6706142	0	-	0.30303	(0.28,0.32]	chr17	656607	11	INTRON	INTRON	METTL16	ENSG00000127804.13	ENST00000263092.11:ENST00000571669.6:ENST00000576556.5:ENST00000574752.5:ENST00000576976.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	30	2	4.2432	4.382765	4.52233	0.0479043	0.0129279	0.153019	0.0990564
chr17	35066100	35066200	6757732	0	-	0.3	(0.28,0.32]	chr17	664142	25	INTRON	INTRON	RFFL	ENSG00000092871.17	ENST00000315249.11:ENST00000584655.5:ENST00000447669.6:ENST00000584541.1:ENST00000414419.6:ENST00000581265.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	30	2	4.2432	4.382765	4.52233	0.0479043	0.0129279	0.153019	0.0990564
chr2	227485159	227485259	1025788	0	+	0.3	(0.28,0.32]	chr2	109556	122	INTRON	INTRON	AGFG1	ENSG00000173744.18	ENST00000409979.6:ENST00000310078.13:ENST00000409315.5:ENST00000373671.7:ENST00000409171.5	protein_coding	protein_coding	protein_coding	protein_coding	0	30	2	4.2432	4.382765	4.52233	0.0479043	0.0129279	0.153019	0.0990564
chr20	34466224	34466324	7260162	0	+	0.32	(0.28,0.32]	chr20	737515	5	PRIMIRNA	PRIMIRNA:INTRON	ITCH:MIR644A	ENSG00000078747.16:ENSG00000207997.1	ENST00000374864.10:ENST00000535650.7:ENST00000670516.1:ENST00000665484.1:ENST00000664852.1:ENST00000660337.1:ENST00000262650.10:ENST00000665346.1:ENST00000483727.5:ENST00000385262.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript:primary_miRNA	0	30	2	4.2432	4.382765	4.52233	0.0479043	0.0129279	0.153019	0.0990564
chr3	119912503	119912603	1793607	0	-	0.29	(0.28,0.32]	chr3	180179	4	SS5_PROX	SS5_PROX:INTRON	GSK3B	ENSG00000082701.17	ENST00000264235.13:ENST00000316626.6:ENST00000678439.1:ENST00000677502.1:ENST00000676566.1:ENST00000650344.2:ENST00000679206.1:ENST00000677716.1:ENST00000679194.1:ENST00000677362.1:ENST00000678181.1:ENST00000678561.1:ENST00000676887.1:ENST00000678787.1:ENST00000679066.1:ENST00000679188.1:ENST00000678377.1:ENST00000677995.1:ENST00000677788.1:ENST00000678245.1:ENST00000676733.1:ENST00000678678.1:ENST00000677067.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	30	2	4.2432	4.382765	4.52233	0.0479043	0.0129279	0.153019	0.0990564
chr3	142003943	142004043	1833985	0	-	0.29	(0.28,0.32]	chr3	184334	32	INTRON	INTRON	TFDP2	ENSG00000114126.18	ENST00000489671.6:ENST00000486111.5:ENST00000477292.5:ENST00000495310.5:ENST00000467072.5:ENST00000487734.5:ENST00000479040.5:ENST00000467667.5:ENST00000478006.5:ENST00000497579.5:ENST00000464782.5:ENST00000488107.6:ENST00000475734.5:ENST00000471095.5:ENST00000494358.5:ENST00000467634.1:ENST00000495095.6:ENST00000476617.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	30	2	4.2432	4.382765	4.52233	0.0479043	0.0129279	0.153019	0.0990564
chr5	146220602	146220702	2514285	0	+	0.29	(0.28,0.32]	chr5	240158	11	INTRON	INTRON	ENSG00000275740:RBM27	ENSG00000275740.1:ENSG00000091009.8	ENST00000506502.2:ENST00000265271.7	protein_coding	protein_coding	protein_coding	protein_coding	0	30	2	4.2432	4.382765	4.52233	0.0479043	0.0129279	0.153019	0.0990564
chr6	42620351	42620451	2865634	0	+	0.3	(0.28,0.32]	chr6	271081	1	INTRON	INTRON	UBR2	ENSG00000024048.11	ENST00000372899.6:ENST00000372901.2	protein_coding	protein_coding	protein_coding	protein_coding	0	30	2	4.2432	4.382765	4.52233	0.0479043	0.0129279	0.153019	0.0990564
chr7	150256753	150256853	3672982	0	-	0.32	(0.28,0.32]	chr7	340876	73	INTRON	INTRON	ACTR3C	ENSG00000106526.11	ENST00000478393.5:ENST00000683684.1:ENST00000252071.8	protein_coding	protein_coding	protein_coding	protein_coding	0	30	2	4.2432	4.382765	4.52233	0.0479043	0.0129279	0.153019	0.0990564
chr8	47955773	47955873	3945719	0	-	0.3	(0.28,0.32]	chr8	361965	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7:ENST00000540819.1	protein_coding	protein_coding	protein_coding	protein_coding	0	30	2	4.2432	4.382765	4.52233	0.0479043	0.0129279	0.153019	0.0990564
chr9	123603143	123603242	4342742	0	-	0.282828	(0.28,0.32]	chr9	399072	195	INTRON	INTRON	DENND1A	ENSG00000119522.17	ENST00000373624.6:ENST00000473039.5:ENST00000394215.7:ENST00000373620.7:ENST00000491650.5:ENST00000373618.1:ENST00000474676.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	30	2	4.2432	4.382765	4.52233	0.0479043	0.0129279	0.153019	0.0990564
chrX	73994411	73994484	7682603	0	+	0.30137	(0.28,0.32]	chrX	786645	2	SS3_PROX	SS3_PROX:INTRON	JPX	ENSG00000225470.8	ENST00000664637.1:ENST00000639185.1:ENST00000655090.1:ENST00000640437.1:ENST00000660546.1:ENST00000667886.1:ENST00000660840.1:ENST00000657179.1:ENST00000670506.1:ENST00000657910.1:ENST00000662120.1:ENST00000671207.1:ENST00000659254.1:ENST00000656624.1:ENST00000667573.1:ENST00000660856.1:ENST00000660836.1:ENST00000668590.1:ENST00000658649.1:ENST00000414209.6:ENST00000654137.1:ENST00000670994.1:ENST00000602772.5:ENST00000655879.1:ENST00000657372.1:ENST00000657096.1:ENST00000602985.6:ENST00000670685.1:ENST00000670503.1:ENST00000663027.1:ENST00000654995.1:ENST00000602895.6:ENST00000654374.1:ENST00000660087.1:ENST00000665032.1:ENST00000671336.1:ENST00000671476.1:ENST00000667057.1:ENST00000670192.1:ENST00000670464.1:ENST00000665345.1:ENST00000661546.1:ENST00000662543.1:ENST00000602938.6:ENST00000664295.1:ENST00000654005.1:ENST00000669149.1:ENST00000659852.1:ENST00000656509.1:ENST00000602294.6:ENST00000667294.1:ENST00000663470.1:ENST00000602920.6:ENST00000671021.1:ENST00000659849.1:ENST00000667937.1:ENST00000661130.1:ENST00000654196.1:ENST00000655994.1:ENST00000659373.1:ENST00000662239.1:ENST00000670805.1:ENST00000656263.1:ENST00000653069.1:ENST00000657638.1:ENST00000653808.1:ENST00000653929.1:ENST00000653885.1:ENST00000659023.1:ENST00000602546.5:ENST00000659622.1:ENST00000671518.1:ENST00000670408.1	lncRNA	lncRNA	lncRNA	lncRNA	0	30	2	4.2432	4.382765	4.52233	0.0479043	0.0129279	0.153019	0.0990564
chr20	32526465	32526564	7326326	0	-	0.383838	(0.378,0.408]	chr20	746117	52	INTRON	INTRON	NOL4L	ENSG00000197183.15	ENST00000621426.7:ENST00000375678.7:ENST00000201961.6	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	3.82294	4.38272	4.9425	0.044228	0.00452675	0.162255	0.0595107
chr4	39030167	39030265	2128404	0	-	0.397959	(0.378,0.408]	chr4	209720	12	INTRON	INTRON	TMEM156	ENSG00000121895.8	ENST00000381938.4:ENST00000344606.6:ENST00000372489.2:ENST00000495029.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	31	2	3.82294	4.38272	4.9425	0.044228	0.00452675	0.162255	0.0595107
chr5	104280776	104280876	2443223	0	+	0.4	(0.378,0.408]	chr5	234410	1755	INTRON	INTRON	LINC02163	ENSG00000251026.2	ENST00000662211.1:ENST00000666145.1	lncRNA	lncRNA	lncRNA	lncRNA	0	31	2	3.82294	4.38272	4.9425	0.044228	0.00452675	0.162255	0.0595107
chrX	71391592	71391687	7678486	0	+	0.378947	(0.378,0.408]	chrX	786216	16	INTRON	INTRON	TAF1	ENSG00000147133.17	ENST00000683202.1:ENST00000373790.9:ENST00000423759.6:ENST00000683782.1:ENST00000683715.1:ENST00000683668.1:ENST00000276072.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	31	2	3.82294	4.38272	4.9425	0.044228	0.00452675	0.162255	0.0595107
chr1	51401283	51401368	453155	0	-	0.317647	(0.28,0.32]	chr1	54334	2	SS3_PROX	SS3_PROX:INTRON	EPS15	ENSG00000085832.17	ENST00000371733.8:ENST00000371730.6:ENST00000486505.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	30	2	4.33863	4.382465	4.4263	0.0330296	0.0207276	0.133816	0.122348
chr1	58545744	58545841	467226	0	-	0.319588	(0.28,0.32]	chr1	56372	29	INTRON	INTRON	OMA1	ENSG00000162600.12	ENST00000371226.8:ENST00000456980.5:ENST00000467063.1:ENST00000419242.5:ENST00000426139.5:ENST00000453710.1:ENST00000482274.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	30	2	4.33863	4.382465	4.4263	0.0330296	0.0207276	0.133816	0.122348
chr1	179157480	179157580	592357	0	-	0.32	(0.28,0.32]	chr1	71074	145	INTRON	INTRON	ABL2	ENSG00000143322.21	ENST00000502732.6:ENST00000367623.8:ENST00000507173.5:ENST00000511413.5:ENST00000668691.1:ENST00000392043.4:ENST00000660584.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	30	2	4.33863	4.382465	4.4263	0.0330296	0.0207276	0.133816	0.122348
chr12	123988538	123988638	5244776	0	+	0.31	(0.28,0.32]	chr12	498673	4	SS5_PROX	SS5_PROX:INTRON	ZNF664	ENSG00000179195.16	ENST00000537532.5:ENST00000539644.5:ENST00000392404.7:ENST00000538932.6:ENST00000337815.9:ENST00000541448.5:ENST00000542493.5:ENST00000543017.5:ENST00000546098.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	30	2	4.33863	4.382465	4.4263	0.0330296	0.0207276	0.133816	0.122348
chr13	99080424	99080524	5646761	0	-	0.32	(0.28,0.32]	chr13	537857	645	INTRON	INTRON	DOCK9	ENSG00000088387.21	ENST00000652315.1:ENST00000427887.2:ENST00000479769.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	30	2	4.33863	4.382465	4.4263	0.0330296	0.0207276	0.133816	0.122348
chr16	29559563	29559656	6471192	0	-	0.311828	(0.28,0.32]	chr16	625269	3	INTRON	INTRON	ENSG00000288632:SMG1P2	ENSG00000288632.1:ENSG00000205534.6	ENST00000675579.1:ENST00000566127.1	lncRNA	lncRNA	lncRNA:transcribed_unprocessed_pseudogene	lncRNA:transcribed_unprocessed_pseudogene	0	30	2	4.33863	4.382465	4.4263	0.0330296	0.0207276	0.133816	0.122348
chr4	1305054	1305154	1909662	0	+	0.32	(0.28,0.32]	chr4	191478	52	INTRON	INTRON	MAEA	ENSG00000090316.16	ENST00000505177.6:ENST00000513301.5:ENST00000303400.9:ENST00000264750.10:ENST00000503653.5:ENST00000512308.5:ENST00000502558.5:ENST00000509254.5:ENST00000514708.5:ENST00000508634.1:ENST00000503693.1:ENST00000509531.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	30	2	4.33863	4.382465	4.4263	0.0330296	0.0207276	0.133816	0.122348
chr5	104276177	104276277	2443177	0	+	0.32	(0.28,0.32]	chr5	234410	1709	INTRON	INTRON	LINC02163	ENSG00000251026.2	ENST00000662211.1:ENST00000666145.1	lncRNA	lncRNA	lncRNA	lncRNA	0	30	2	4.33863	4.382465	4.4263	0.0330296	0.0207276	0.133816	0.122348
chr7	2310742	2310841	3467650	0	-	0.313131	(0.28,0.32]	chr7	324245	9	INTRON	INTRON	SNX8	ENSG00000106266.11	ENST00000222990.8:ENST00000435336.5:ENST00000494722.1:ENST00000447136.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	30	2	4.33863	4.382465	4.4263	0.0330296	0.0207276	0.133816	0.122348
chr7	121285376	121285476	3396631	0	+	0.39	(0.378,0.408]	chr7	317818	136	INTRON	INTRON	CPED1	ENSG00000106034.18	ENST00000310396.10	protein_coding	protein_coding	protein_coding	protein_coding	2	86	2	2.80155	4.38224	5.96293	0.00278307	1.59815e-5	0.0469265	0.00301858
chr21	44968709	44968809	7417750	0	+	0.48	(0.476,0.515]	chr21	756238	2	SS3_PROX	SS3_PROX:INTRON	SLX9	ENSG00000160256.13	ENST00000397826.7:ENST00000458015.1:ENST00000291634.11:ENST00000479127.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	94	2	2.5238	4.38215	6.2405	0.00218334	1.22785e-5	0.0435144	0.00278588
chr17	46101891	46101991	6783953	0	-	0.33	(0.32,0.35]	chr17	669208	68	INTRON	INTRON	KANSL1	ENSG00000120071.15	ENST00000574590.6:ENST00000572904.6:ENST00000432791.7:ENST00000575318.6:ENST00000638275.1:ENST00000262419.10:ENST00000648792.1:ENST00000639531.1:ENST00000639150.1:ENST00000639853.1:ENST00000571698.2:ENST00000639375.1:ENST00000577114.2:ENST00000638269.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	65	2	3.68775	4.38202	5.07629	0.00468114	4.66127e-4	0.0600108	0.0195589
chr4	39700087	39700187	1953011	0	+	0.33	(0.32,0.35]	chr4	195630	13	INTRON	INTRON	UBE2K	ENSG00000078140.14	ENST00000510934.5:ENST00000261427.10:ENST00000438068.6:ENST00000513231.5:ENST00000503368.5:ENST00000445950.2:ENST00000510719.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	118	2	2.70922	4.381985	6.05475	4.28954e-4	1.2096e-4	0.0185474	0.00992813
chr1	55090733	55090831	464584	0	-	0.489796	(0.476,0.515]	chr1	55997	6	INTRON	INTRON	USP24	ENSG00000162402.14	ENST00000294383.7	protein_coding	protein_coding	protein_coding	protein_coding	1	62	2	3.05152	4.381835000000001	5.71215	0.0064848	5.54639e-5	0.0699952	0.00609037
chr2	121485690	121485790	1220740	0	-	0.5	(0.476,0.515]	chr2	129995	154	INTRON	INTRON	CLASP1	ENSG00000074054.20	ENST00000263710.8:ENST00000397587.7:ENST00000541377.5:ENST00000409078.8:ENST00000455322.6:ENST00000452274.6:ENST00000430234.5:ENST00000418989.5:ENST00000449975.1:ENST00000474065.5:ENST00000480007.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	62	2	3.05152	4.381835000000001	5.71215	0.0064848	5.54639e-5	0.0699952	0.00609037
chr16	74983802	74983902	6527283	0	-	0.51	(0.476,0.515]	chr16	632164	48	INTRON	INTRON	WDR59	ENSG00000103091.15	ENST00000262144.11:ENST00000616369.4:ENST00000536050.5:ENST00000568323.5:ENST00000562331.5:ENST00000564859.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	62	2	3.41728	4.381584999999999	5.34589	0.00165726	3.224e-4	0.0369207	0.0159645
chr17	31990869	31990967	6596224	0	+	0.469388	(0.44,0.476]	chr17	641589	20	INTRON	INTRON	SUZ12	ENSG00000178691.11	ENST00000322652.10:ENST00000580398.1	protein_coding	protein_coding	protein_coding	protein_coding	3	93	2	2.85407	4.38154	5.90901	4.30929e-4	7.5486e-5	0.018618	0.00777227
chr10	70692739	70692839	4447526	0	+	0.43	(0.408,0.44]	chr10	410366	174	INTRON	INTRON	ADAMTS14	ENSG00000138316.11	ENST00000373207.2:ENST00000373208.5	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.23096	4.38092	4.53088	0.0278028	0.00669275	0.123904	0.0738715
chr11	64364700	64364800	4803327	0	+	0.44	(0.408,0.44]	chr11	445820	23	INTRON	INTRON	RPS6KA4	ENSG00000162302.13	ENST00000528057.5:ENST00000334205.9:ENST00000528355.5:ENST00000530504.1:ENST00000532885.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	28	2	4.23096	4.38092	4.53088	0.0278028	0.00669275	0.123904	0.0738715
chr12	21642714	21642804	5277878	0	-	0.422222	(0.408,0.44]	chr12	503003	2	INTRON	INTRON	LDHB	ENSG00000111716.14	ENST00000350669.5:ENST00000673047.2:ENST00000396076.5:ENST00000396075.5	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.23096	4.38092	4.53088	0.0278028	0.00669275	0.123904	0.0738715
chr17	37451245	37451345	6604080	0	+	0.43	(0.408,0.44]	chr17	642804	2	INTRON	INTRON	TADA2A	ENSG00000276234.5	ENST00000615182.5:ENST00000620628.4:ENST00000614122.4:ENST00000620367.4:ENST00000612272.4:ENST00000615328.4:ENST00000620086.4:ENST00000619777.4:ENST00000619335.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	28	2	4.23096	4.38092	4.53088	0.0278028	0.00669275	0.123904	0.0738715
chr2	32452809	32452909	731759	0	+	0.42	(0.408,0.44]	chr2	84393	35	INTRON	INTRON	BIRC6	ENSG00000115760.15	ENST00000421745.7:ENST00000648282.1	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.23096	4.38092	4.53088	0.0278028	0.00669275	0.123904	0.0738715
chr21	36059378	36059476	7458713	0	-	0.418367	(0.408,0.44]	chr21	760019	6	UTR5	UTR5:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SETD4	ENSG00000185917.14	ENST00000399212.5:ENST00000332131.9:ENST00000481477.5:ENST00000399215.5:ENST00000399201.5:ENST00000399208.6:ENST00000399205.5:ENST00000399207.5:ENST00000424303.5:ENST00000429161.5:ENST00000446166.5:ENST00000442559.5:ENST00000443703.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	28	2	4.23096	4.38092	4.53088	0.0278028	0.00669275	0.123904	0.0738715
chr22	20548648	20548748	7479764	0	+	0.44	(0.408,0.44]	chr22	762972	111	INTRON	INTRON	MED15	ENSG00000099917.17	ENST00000445987.5:ENST00000444094.5:ENST00000414658.5:ENST00000486656.5:ENST00000433831.5:ENST00000432052.5:ENST00000292733.11:ENST00000263205.11:ENST00000477824.5:ENST00000406969.5:ENST00000382974.6:ENST00000441501.5:ENST00000445189.5:ENST00000451058.5:ENST00000473028.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	28	2	4.23096	4.38092	4.53088	0.0278028	0.00669275	0.123904	0.0738715
chr22	24394800	24394899	7488140	0	+	0.434343	(0.408,0.44]	chr22	764070	251	INTRON	INTRON	SPECC1L	ENSG00000100014.20	ENST00000437398.5:ENST00000314328.14:ENST00000651059.1:ENST00000541492.1	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.23096	4.38092	4.53088	0.0278028	0.00669275	0.123904	0.0738715
chr22	45164955	45165055	7529868	0	+	0.41	(0.408,0.44]	chr22	769855	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	NUP50	ENSG00000093000.19	ENST00000347635.9:ENST00000407019.6:ENST00000424634.5:ENST00000497960.5:ENST00000417702.5:ENST00000461437.5:ENST00000430547.5:ENST00000434760.5:ENST00000484186.5:ENST00000445721.5:ENST00000493456.5:ENST00000396096.6:ENST00000461194.5:ENST00000432340.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	28	2	4.23096	4.38092	4.53088	0.0278028	0.00669275	0.123904	0.0738715
chr4	169686366	169686464	2080541	0	+	0.438776	(0.408,0.44]	chr4	205626	58	INTRON	INTRON	CLCN3	ENSG00000109572.15	ENST00000511092.5:ENST00000347613.8:ENST00000360642.7:ENST00000512813.5:ENST00000513761.6:ENST00000613795.4:ENST00000507875.5	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.23096	4.38092	4.53088	0.0278028	0.00669275	0.123904	0.0738715
chr5	22451113	22451213	2588580	0	-	0.42	(0.408,0.44]	chr5	246434	454	INTRON	INTRON	CDH12	ENSG00000154162.15	ENST00000382254.6:ENST00000504376.6:ENST00000520668.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	28	2	4.23096	4.38092	4.53088	0.0278028	0.00669275	0.123904	0.0738715
chr6	37978093	37978193	2858617	0	+	0.43	(0.408,0.44]	chr6	270231	477	INTRON	INTRON	ZFAND3	ENSG00000156639.12	ENST00000287218.9:ENST00000373391.6:ENST00000474522.5:ENST00000373389.5	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.23096	4.38092	4.53088	0.0278028	0.00669275	0.123904	0.0738715
chr6	78994544	78994643	3141223	0	-	0.414141	(0.408,0.44]	chr6	292808	32	INTRON	INTRON	PHIP	ENSG00000146247.14	ENST00000275034.5	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.23096	4.38092	4.53088	0.0278028	0.00669275	0.123904	0.0738715
chr8	23021205	23021303	3923454	0	-	0.418367	(0.408,0.44]	chr8	359060	12	UTR3	UTR3:EXON_MRNA	TNFRSF10B	ENSG00000120889.13	ENST00000276431.9:ENST00000523752.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	28	2	4.23096	4.38092	4.53088	0.0278028	0.00669275	0.123904	0.0738715
chr9	68733333	68733433	4134339	0	+	0.44	(0.408,0.44]	chr9	376869	40	INTRON	INTRON	PIP5K1B	ENSG00000107242.20	ENST00000265382.8:ENST00000541509.5:ENST00000472907.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	28	2	4.23096	4.38092	4.53088	0.0278028	0.00669275	0.123904	0.0738715
chr9	129494692	129494792	4209864	0	+	0.41	(0.408,0.44]	chr9	385759	7	INTRON	INTRON	LINC00963	ENSG00000204054.14	ENST00000653047.1:ENST00000454968.5:ENST00000652803.1:ENST00000444184.6:ENST00000658785.1:ENST00000656664.1:ENST00000666282.1:ENST00000663727.1:ENST00000663000.1:ENST00000666041.1:ENST00000657306.1:ENST00000668074.1:ENST00000656234.1:ENST00000662331.1:ENST00000654822.1:ENST00000659188.1:ENST00000658175.1:ENST00000654204.1:ENST00000659535.1:ENST00000653700.1:ENST00000667047.1:ENST00000665998.1:ENST00000664811.1:ENST00000665880.1:ENST00000662047.1:ENST00000671609.1:ENST00000671555.1:ENST00000655787.1:ENST00000419300.3:ENST00000423918.5:ENST00000661101.1:ENST00000666559.1:ENST00000668919.1:ENST00000654131.1:ENST00000653386.1:ENST00000655962.1:ENST00000659690.1:ENST00000657389.1:ENST00000668206.1:ENST00000669088.1:ENST00000654286.1:ENST00000658999.1:ENST00000624138.4:ENST00000454635.6:ENST00000625171.4:ENST00000624390.1:ENST00000622972.3:ENST00000624009.3:ENST00000669210.1:ENST00000412141.2:ENST00000622680.2	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	0	28	2	4.23096	4.38092	4.53088	0.0278028	0.00669275	0.123904	0.0738715
chr20	44208376	44208471	7344678	0	-	0.389474	(0.378,0.408]	chr20	748601	4	INTRON	INTRON	OSER1	ENSG00000132823.11	ENST00000255174.3:ENST00000372970.6	protein_coding	protein_coding	protein_coding	protein_coding	2	79	2	3.08809	4.380735	5.67338	5.71831e-4	3.05145e-4	0.0217398	0.0161236
chr10	35508329	35508429	4426230	0	+	0.42	(0.408,0.44]	chr10	407931	64	INTRON	INTRON	CCNY	ENSG00000108100.18	ENST00000374706.5:ENST00000490012.6:ENST00000493157.6:ENST00000374704.8:ENST00000265375.13:ENST00000339497.7:ENST00000492478.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	28	2	4.334	4.380565	4.42713	0.0173083	0.011982	0.104099	0.0962115
chr13	50596576	50596676	5496160	0	+	0.41	(0.408,0.44]	chr13	526208	66	INTRON	INTRON	DLEU1	ENSG00000176124.15	ENST00000470726.7:ENST00000479420.5:ENST00000647700.1:ENST00000484869.6	lncRNA	lncRNA	lncRNA	lncRNA	0	28	2	4.334	4.380565	4.42713	0.0173083	0.011982	0.104099	0.0962115
chr15	65175446	65175546	6206503	0	-	0.44	(0.408,0.44]	chr15	592133	83	INTRON	INTRON	CLPX	ENSG00000166855.9	ENST00000300107.7:ENST00000559152.5:ENST00000558958.1:ENST00000559218.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	28	2	4.334	4.380565	4.42713	0.0173083	0.011982	0.104099	0.0962115
chr15	84785295	84785395	6088691	0	+	0.44	(0.408,0.44]	chr15	579454	4	SS5_PROX	SS5_PROX:INTRON	ZNF592	ENSG00000166716.10	ENST00000560079.7:ENST00000559607.1:ENST00000299927.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	28	2	4.334	4.380565	4.42713	0.0173083	0.011982	0.104099	0.0962115
chr17	66524551	66524651	6664518	0	+	0.41	(0.408,0.44]	chr17	650332	279	INTRON	INTRON	PRKCA	ENSG00000154229.12	ENST00000413366.8:ENST00000578063.5:ENST00000284384.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	28	2	4.334	4.380565	4.42713	0.0173083	0.011982	0.104099	0.0962115
chr2	39416397	39416497	1104092	0	-	0.42	(0.408,0.44]	chr2	118511	367	INTRON	INTRON	MAP4K3	ENSG00000011566.15	ENST00000263881.8:ENST00000341681.9:ENST00000429397.5:ENST00000437968.1:ENST00000484274.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	28	2	4.334	4.380565	4.42713	0.0173083	0.011982	0.104099	0.0962115
chr2	131121775	131121875	864563	0	+	0.42	(0.408,0.44]	chr2	97130	4	INTRON	INTRON	PLEKHB2	ENSG00000115762.17	ENST00000403716.5:ENST00000439822.6:ENST00000409158.5:ENST00000234115.10:ENST00000628582.2:ENST00000482225.1:ENST00000693505.1:ENST00000438882.6:ENST00000404460.5:ENST00000409612.5:ENST00000409279.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	28	2	4.334	4.380565	4.42713	0.0173083	0.011982	0.104099	0.0962115
chr7	133664429	133664529	3422295	0	+	0.43	(0.408,0.44]	chr7	319395	339	INTRON	INTRON	EXOC4	ENSG00000131558.15	ENST00000253861.5:ENST00000479839.6:ENST00000483800.5:ENST00000469115.5:ENST00000489931.5:ENST00000482089.5:ENST00000460346.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	28	2	4.334	4.380565	4.42713	0.0173083	0.011982	0.104099	0.0962115
chr7	148700330	148700430	3443701	0	+	0.43	(0.408,0.44]	chr7	321167	2	SS5_PROX	SS5_PROX:INTRON	CUL1	ENSG00000055130.18	ENST00000409469.5:ENST00000662716.1:ENST00000665936.1:ENST00000663044.1:ENST00000602748.5:ENST00000663835.1:ENST00000655324.1:ENST00000662132.1:ENST00000325222.9:ENST00000656001.1:ENST00000666124.1:ENST00000671421.1:ENST00000671397.1:ENST00000662670.1:ENST00000660240.1:ENST00000662975.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	28	2	4.334	4.380565	4.42713	0.0173083	0.011982	0.104099	0.0962115
chrX	102799102	102799202	7696202	0	+	0.44	(0.408,0.44]	chrX	787606	283	INTRON	INTRON	LINC00630	ENSG00000223546.8	ENST00000661018.1:ENST00000431616.5:ENST00000664568.1:ENST00000668536.1:ENST00000440496.5:ENST00000420471.5:ENST00000663114.1:ENST00000658813.1:ENST00000435966.1:ENST00000656628.1	lncRNA	lncRNA	lncRNA	lncRNA	0	28	2	4.334	4.380565	4.42713	0.0173083	0.011982	0.104099	0.0962115
chr4	25834696	25834796	2120345	0	-	0.37	(0.35,0.378]	chr4	209463	1	SS5_PROX	SS5_PROX:INTRON	SEL1L3	ENSG00000091490.11	ENST00000264868.9:ENST00000399878.8:ENST00000502949.5:ENST00000513364.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	61	2	3.49967	4.38046	5.26125	0.00191117	9.80974e-4	0.03947	0.0287765
chr1	77722263	77722331	493757	0	-	0.235294	[0,0.28]	chr1	58390	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	USP33	ENSG00000077254.14	ENST00000370794.7:ENST00000370793.5:ENST00000357428.5:ENST00000481579.5:ENST00000370792.7:ENST00000461986.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	80	2	2.77716	4.38039	5.98362	0.022039	1.23405e-4	0.115395	0.00949832
chr17	30873108	30873206	6590851	0	+	0.336735	(0.32,0.35]	chr17	640994	31	INTRON	INTRON	ATAD5	ENSG00000176208.9	ENST00000321990.5:ENST00000578295.5	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay	1	64	2	3.13277	4.38036	5.62795	0.00458313	7.01392e-4	0.0622676	0.024224
chr9	120455664	120455763	4332616	0	-	0.464646	(0.44,0.476]	chr9	398023	14	INTRON	INTRON	CDK5RAP2	ENSG00000136861.19	ENST00000349780.9:ENST00000360190.8:ENST00000687279.1:ENST00000687633.1:ENST00000684780.1:ENST00000687311.1:ENST00000479584.2:ENST00000690814.1:ENST00000686842.1:ENST00000693714.1:ENST00000693386.1:ENST00000692746.1:ENST00000686376.1:ENST00000692155.1:ENST00000690646.1:ENST00000693433.1:ENST00000688923.1:ENST00000473282.6:ENST00000480112.5:ENST00000685866.1:ENST00000689688.1:ENST00000416449.6:ENST00000691504.1:ENST00000360822.8:ENST00000693728.1:ENST00000483412.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	94	2	2.50105	4.37995	6.25885	0.00240161	1.28061e-5	0.0452061	0.00283726
chr2	70229718	70229818	1152277	0	-	0.49	(0.476,0.515]	chr2	123095	4	SS3_PROX	SS3_PROX:INTRON	C2orf42:TIA1	ENSG00000115998.8:ENSG00000116001.17	ENST00000470096.1:ENST00000415783.6:ENST00000433529.7:ENST00000282574.8:ENST00000445587.5:ENST00000416149.6:ENST00000474809.6:ENST00000477044.6:ENST00000361692.4:ENST00000496452.5:ENST00000481650.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	59	2	3.66565	4.3799399999999995	5.09423	0.00204588	4.18031e-4	0.04086	0.0182827
chr12	53038961	53039053	5141761	0	+	0.358696	(0.35,0.378]	chr12	485047	7	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	EIF4B	ENSG00000063046.18	ENST00000262056.14:ENST00000420463.7:ENST00000416762.7:ENST00000549592.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	83	2	2.67874	4.379925	6.08111	0.00373022	6.68078e-5	0.0561984	0.00720358
chr22	16789496	16789596	7546294	0	-	0.2	[0,0.28]	chr22	771315	47	INTRON	INTRON	XKR3	ENSG00000172967.8	ENST00000331428.5:ENST00000684488.1	protein_coding	protein_coding	protein_coding	protein_coding	1	81	2	3.36489	4.37992	5.39495	0.00388509	0.00133175	0.0544269	0.0335129
chr12	118386485	118386585	5234500	0	+	0.38	(0.378,0.408]	chr12	496618	3	SS5_PROX	SS5_PROX:INTRON	SUDS3	ENSG00000111707.12	ENST00000543473.2	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	3.98867	4.37986	4.77105	0.0507	0.00330823	0.156383	0.0527031
chr17	20019301	20019401	6571886	0	+	0.38	(0.378,0.408]	chr17	639055	8	INTRON	INTRON	SPECC1	ENSG00000128487.19	ENST00000677148.1:ENST00000679048.1:ENST00000678019.1:ENST00000678315.1:ENST00000678321.1:ENST00000676570.1:ENST00000678651.1:ENST00000679049.1:ENST00000472876.5:ENST00000467722.3:ENST00000583528.6:ENST00000680019.1:ENST00000395527.9:ENST00000681593.1:ENST00000680830.1:ENST00000680124.1:ENST00000583482.7:ENST00000679255.1:ENST00000681202.1:ENST00000677914.1:ENST00000578321.2:ENST00000680374.1:ENST00000583463.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	29	2	3.98867	4.37986	4.77105	0.0507	0.00330823	0.156383	0.0527031
chr19	21310100	21310200	7158446	0	-	0.39	(0.378,0.408]	chr19	723666	2	SS5_PROX	SS5_PROX:INTRON	ZNF708	ENSG00000182141.10	ENST00000356929.3:ENST00000598046.5:ENST00000601295.1:ENST00000602023.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	29	2	3.98867	4.37986	4.77105	0.0507	0.00330823	0.156383	0.0527031
chr21	42983952	42984051	7411633	0	+	0.383838	(0.378,0.408]	chr21	755317	89	INTRON	INTRON	PKNOX1	ENSG00000160199.15	ENST00000432907.6:ENST00000418336.6:ENST00000291547.10:ENST00000480179.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	29	2	3.98867	4.37986	4.77105	0.0507	0.00330823	0.156383	0.0527031
chr3	161237812	161237912	1546361	0	+	0.38	(0.378,0.408]	chr3	160848	3	SS3_PROX	SS3_PROX:INTRON	NMD3	ENSG00000169251.13	ENST00000493066.5:ENST00000472947.5:ENST00000351193.7:ENST00000463518.5:ENST00000460469.1	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	3.98867	4.37986	4.77105	0.0507	0.00330823	0.156383	0.0527031
chr12	91499414	91499514	5384210	0	-	0.21	[0,0.28]	chr12	513479	997	INTRON	INTRON	ENSG00000289605	ENSG00000289605.1	ENST00000685093.1	lncRNA	lncRNA	lncRNA	lncRNA	1	72	2	3.09587	4.3798	5.66373	0.00651565	0.00196371	0.0735232	0.0401678
chr20	3990178	3990278	7309154	0	-	0.31	(0.28,0.32]	chr20	744300	154	INTRON	INTRON	RNF24	ENSG00000101236.17	ENST00000336095.10:ENST00000358395.11:ENST00000545616.2	protein_coding	protein_coding	protein_coding	protein_coding	1	73	2	2.91851	4.3798	5.84109	0.0130672	1.04715e-4	0.093385	0.00863456
chr21	39275072	39275172	7465148	0	-	0.23	[0,0.28]	chr21	760524	2	INTRON	INTRON	BRWD1	ENSG00000185658.14	ENST00000333229.6:ENST00000342449.8:ENST00000380800.7:ENST00000430093.5:ENST00000445245.5:ENST00000445668.5:ENST00000412604.1:ENST00000455867.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	72	2	3.09587	4.3798	5.66373	0.00651565	0.00196371	0.0735232	0.0401678
chr2	27586308	27586407	717966	0	+	0.535354	(0.515,0.57]	chr2	83352	22	INTRON	INTRON	ZNF512	ENSG00000243943.10	ENST00000413371.6:ENST00000416005.6:ENST00000556601.5:ENST00000379717.5:ENST00000355467.6:ENST00000494548.1:ENST00000461705.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	56	2	3.45014	4.379675000000001	5.30921	0.00116948	1.98811e-4	0.0312127	0.0122787
chr8	38248335	38248431	3735705	0	+	0.395833	(0.378,0.408]	chr8	347135	1	INTRON	INTRON	DDHD2	ENSG00000085788.14	ENST00000397166.7:ENST00000520272.6:ENST00000532106.1:ENST00000528888.5:ENST00000528504.5:ENST00000517385.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	64	2	3.32016	4.37954	5.43892	0.00268328	2.28412e-4	0.0464781	0.0133228
chr12	107701634	107701734	5218920	0	+	0.41	(0.408,0.44]	chr12	494023	18	INTRON	INTRON	PWP1	ENSG00000136045.12	ENST00000412830.8:ENST00000541166.1	protein_coding	protein_coding	protein_coding	protein_coding	1	58	2	3.41323	4.379355	5.34548	0.00129989	9.40657e-4	0.0333764	0.0280776
chr2	168874282	168874381	1259622	0	-	0.353535	(0.35,0.378]	chr2	133375	2	INTRON	INTRON	SPC25	ENSG00000152253.9	ENST00000479309.6:ENST00000282074.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	29	2	4.08816	4.378725	4.66929	0.046021	0.00541617	0.149888	0.066545000000000007
chr2	171930433	171930533	918440	0	+	0.36	(0.35,0.378]	chr2	101183	44	INTRON	INTRON	HAT1	ENSG00000128708.13	ENST00000412731.5:ENST00000264108.5:ENST00000457761.6:ENST00000494601.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	29	2	4.08816	4.378725	4.66929	0.046021	0.00541617	0.149888	0.066545000000000007
chr9	70339543	70339643	4139992	0	+	0.36	(0.35,0.378]	chr9	377318	150	INTRON	INTRON	SMC5	ENSG00000198887.9	ENST00000361138.7:ENST00000475540.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	29	2	4.08816	4.378725	4.66929	0.046021	0.00541617	0.149888	0.066545000000000007
chr12	132870334	132870430	5450669	0	-	0.46875	(0.44,0.476]	chr12	522218	1	SS5_PROX	SS5_PROX:INTRON	CHFR	ENSG00000072609.18	ENST00000450056.7:ENST00000266880.11:ENST00000443047.6:ENST00000315585.11:ENST00000432561.6:ENST00000541817.5:ENST00000540963.1:ENST00000540537.5:ENST00000542714.5:ENST00000536932.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	58	2	3.3111	4.37865	5.4462	0.0020006	5.83686e-4	0.0412555	0.0223753
chr1	85267333	85267431	497357	0	-	0.204082	[0,0.28]	chr1	58968	17	UTR3	UTR3:EXON_MRNA	BCL10	ENSG00000142867.14	ENST00000648566.1	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.20106	4.37862	4.55618	0.0695895	0.0171034	0.184298	0.110899
chr15	22518888	22518987	5974757	0	+	0.232323	[0,0.28]	chr15	568084	15	INTRON	INTRON	HERC2P2	ENSG00000276550.5	ENST00000613386.4:ENST00000619021.4	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	31	2	4.20106	4.37862	4.55618	0.0695895	0.0171034	0.184298	0.110899
chr2	238178006	238178105	1343982	0	-	0.232323	[0,0.28]	chr2	140893	40	INTRON	INTRON	ILKAP	ENSG00000132323.9	ENST00000254654.8:ENST00000463129.5:ENST00000612675.4:ENST00000622223.4:ENST00000450411.1:ENST00000466468.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	31	2	4.20106	4.37862	4.55618	0.0695895	0.0171034	0.184298	0.110899
chr4	26424910	26424994	1937738	0	+	0.22619	[0,0.28]	chr4	194453	3	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	RBPJ	ENSG00000168214.22	ENST00000681799.1:ENST00000681403.1:ENST00000342295.6:ENST00000512671.6:ENST00000345843.8:ENST00000361572.10:ENST00000514380.5:ENST00000348160.9:ENST00000681506.1:ENST00000509158.6:ENST00000691085.1:ENST00000692303.1:ENST00000681856.1:ENST00000681025.1:ENST00000681679.1:ENST00000680210.1:ENST00000355476.8:ENST00000680140.1:ENST00000680511.1:ENST00000510778.7:ENST00000679698.1:ENST00000679469.1:ENST00000681484.1:ENST00000505958.6:ENST00000507561.5:ENST00000689192.1:ENST00000680928.1:ENST00000681260.1:ENST00000681093.1:ENST00000504423.2:ENST00000342320.8:ENST00000504907.5:ENST00000681264.1:ENST00000680204.1:ENST00000515023.6:ENST00000506903.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	31	2	4.20106	4.37862	4.55618	0.0695895	0.0171034	0.184298	0.110899
chr4	39714460	39714560	1953155	0	+	0.21	[0,0.28]	chr4	195630	157	INTRON	INTRON	UBE2K	ENSG00000078140.14	ENST00000510934.5:ENST00000261427.10:ENST00000438068.6:ENST00000513231.5:ENST00000503368.5:ENST00000445950.2:ENST00000510719.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	79	2	2.89982	4.37862	5.85742	0.0158893	2.14364e-4	0.101453	0.0128514
chr4	184708977	184709076	2304635	0	-	0.191919	[0,0.28]	chr4	222921	62	INTRON	INTRON	CENPU	ENSG00000151725.12	ENST00000281453.10:ENST00000510146.5:ENST00000506535.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	31	2	4.20106	4.37862	4.55618	0.0695895	0.0171034	0.184298	0.110899
chr5	6372142	6372232	2566348	0	-	0.277778	[0,0.28]	chr5	245849	4	UTR3	UTR3:EXON_MRNA	MED10	ENSG00000133398.4	ENST00000255764.4:ENST00000503112.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	31	2	4.20106	4.37862	4.55618	0.0695895	0.0171034	0.184298	0.110899
chr7	129920786	129920886	3637649	0	-	0.2	[0,0.28]	chr7	338216	395	INTRON	INTRON	UBE2H	ENSG00000186591.13	ENST00000355621.8:ENST00000649897.1:ENST00000473814.6:ENST00000496698.5:ENST00000472396.5:ENST00000480245.5:ENST00000490974.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	31	2	4.20106	4.37862	4.55618	0.0695895	0.0171034	0.184298	0.110899
chr7	139284974	139285074	3437138	0	+	0.24	[0,0.28]	chr7	320270	4	SS5_PROX	SS5_PROX:INTRON	UBN2	ENSG00000157741.15	ENST00000473989.8	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.20106	4.37862	4.55618	0.0695895	0.0171034	0.184298	0.110899
chr8	73550179	73550275	3968931	0	-	0.270833	[0,0.28]	chr8	364074	7	UTR3	UTR3:EXON_MRNA:INTRON	STAU2	ENSG00000040341.18	ENST00000524300.6:ENST00000522695.5:ENST00000523558.5:ENST00000521210.5:ENST00000523533.5:ENST00000355780.9:ENST00000519961.5:ENST00000521727.5	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.20106	4.37862	4.55618	0.0695895	0.0171034	0.184298	0.110899
chr9	91836983	91837083	4284132	0	-	0.21	[0,0.28]	chr9	393909	608	INTRON	INTRON	ROR2	ENSG00000169071.15	ENST00000375715.5:ENST00000375708.4:ENST00000550066.5:ENST00000495386.5:ENST00000546883.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	31	2	4.20106	4.37862	4.55618	0.0695895	0.0171034	0.184298	0.110899
chrX	110148668	110148768	7701500	0	+	0.38	(0.378,0.408]	chrX	788157	34	INTRON	INTRON	TMEM164	ENSG00000157600.12	ENST00000372072.7:ENST00000372073.5:ENST00000372068.7:ENST00000288381.4:ENST00000461715.1:ENST00000464177.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	59	2	3.4275	4.37859	5.32968	0.00126053	0.00119786	0.03295	0.0315806
chr1	245895351	245895451	674577	0	-	0.38	(0.378,0.408]	chr1	79681	311	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000366517.5:ENST00000366516.5:ENST00000490107.6:ENST00000470510.5:ENST00000493441.5:ENST00000488153.5:ENST00000492487.5:ENST00000391836.3:ENST00000464398.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	29	2	4.09379	4.378585	4.66338	0.023912	0.0103469	0.129075	0.0850389
chr16	81473389	81473489	6405283	0	+	0.4	(0.378,0.408]	chr16	615026	275	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	4.09379	4.378585	4.66338	0.023912	0.0103469	0.129075	0.0850389
chr19	29986917	29987016	7048010	0	+	0.393939	(0.378,0.408]	chr19	702695	1	INTRON	INTRON	URI1	ENSG00000105176.18	ENST00000360605.8:ENST00000574233.5:ENST00000392271.6:ENST00000574110.5:ENST00000574666.5:ENST00000576442.1:ENST00000570704.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	29	2	4.09379	4.378585	4.66338	0.023912	0.0103469	0.129075	0.0850389
chr2	85323594	85323693	1168921	0	-	0.393939	(0.378,0.408]	chr2	124472	4	INTRON	INTRON	TGOLN2	ENSG00000152291.15	ENST00000398263.6:ENST00000377386.8:ENST00000409015.5:ENST00000409232.7	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	4.09379	4.378585	4.66338	0.023912	0.0103469	0.129075	0.0850389
chr2	180700230	180700330	933659	0	+	0.4	(0.378,0.408]	chr2	102570	74	INTRON	INTRON	SCHLAP1	ENSG00000281131.1	ENST00000629145.1	lncRNA	lncRNA	lncRNA	lncRNA	0	29	2	4.09379	4.378585	4.66338	0.023912	0.0103469	0.129075	0.0850389
chr3	48603997	48604075	1689044	0	-	0.397436	(0.378,0.408]	chr3	172646	1	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	UQCRC1	ENSG00000010256.11	ENST00000203407.6:ENST00000415995.5:ENST00000472438.5:ENST00000412343.5:ENST00000467690.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	29	2	4.09379	4.378585	4.66338	0.023912	0.0103469	0.129075	0.0850389
chr8	17287324	17287424	3707568	0	+	0.4	(0.378,0.408]	chr8	343790	5	INTRON	INTRON	VPS37A	ENSG00000155975.10	ENST00000520140.5:ENST00000324849.9:ENST00000425020.6:ENST00000521829.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	59	2	3.3797	4.378545	5.37739	0.00154501	0.0010014	0.0362716	0.0288906
chr4	174304869	174304966	2082794	0	+	0.381443	(0.378,0.408]	chr4	205834	1	INTRON	INTRON	CEP44	ENSG00000164118.13	ENST00000457424.6:ENST00000396791.7:ENST00000503780.6:ENST00000515299.5:ENST00000426172.3:ENST00000296519.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	109	2	2.74434	4.37841	6.01248	2.94671e-4	6.62964e-5	0.0153497	0.00717086
chr2	111481954	111482053	1211680	0	-	0.343434	(0.32,0.35]	chr2	128939	15	INTRON	INTRON	MIR4435-2HG	ENSG00000172965.17	ENST00000645030.2:ENST00000642191.1:ENST00000673798.1:ENST00000645051.2:ENST00000673649.1:ENST00000669658.1:ENST00000669917.1:ENST00000661559.1:ENST00000653687.1:ENST00000667670.1:ENST00000609220.2:ENST00000656760.1:ENST00000609902.6:ENST00000666683.1:ENST00000674070.1:ENST00000662335.1:ENST00000664422.1:ENST00000673775.1:ENST00000674092.1:ENST00000673958.1:ENST00000658936.1:ENST00000662635.1:ENST00000666204.1:ENST00000659458.1:ENST00000664443.1:ENST00000670295.1:ENST00000661655.1:ENST00000666390.1:ENST00000659079.1:ENST00000660442.1:ENST00000664009.1:ENST00000439362.6:ENST00000654473.1:ENST00000664999.1:ENST00000673728.1:ENST00000659791.1:ENST00000666144.1:ENST00000659933.1:ENST00000670715.1:ENST00000653568.1:ENST00000643013.1:ENST00000673866.1:ENST00000443467.6:ENST00000669875.1:ENST00000673653.1:ENST00000673988.1:ENST00000661945.1:ENST00000669515.1:ENST00000431385.6:ENST00000656416.1:ENST00000674037.1:ENST00000432818.5:ENST00000674013.1:ENST00000444301.5:ENST00000673964.1:ENST00000673845.1:ENST00000673756.1:ENST00000673960.1:ENST00000673804.1:ENST00000673632.1:ENST00000453478.2:ENST00000673937.1:ENST00000673654.1:ENST00000409569.2:ENST00000674087.1:ENST00000419736.5:ENST00000673840.1:ENST00000674045.1:ENST00000643766.1:ENST00000308604.5:ENST00000604981.5:ENST00000673894.1:ENST00000441075.1:ENST00000673878.1	lncRNA	lncRNA	lncRNA	lncRNA	6	157	2	2.13923	4.378245	6.61726	0.00346454	8.11101e-7	0.0519672	5.08792e-4
chr1	50501094	50501194	447647	0	-	0.28	[0,0.28]	chr1	54177	89	INTRON	INTRON	FAF1	ENSG00000185104.21	ENST00000396153.7:ENST00000494400.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	31	2	4.28915	4.3782049999999995	4.46726	0.0427997	0.0319595	0.148082	0.14477
chr15	65002964	65003061	6205761	0	-	0.195876	[0,0.28]	chr15	591985	16	UTR3	UTR3:EXON_MRNA	MTFMT	ENSG00000103707.10	ENST00000220058.9:ENST00000558460.5:ENST00000560717.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	31	2	4.28915	4.3782049999999995	4.46726	0.0427997	0.0319595	0.148082	0.14477
chr16	21480865	21480964	6461159	0	-	0.272727	[0,0.28]	chr16	623355	9	INTRON	INTRON	SMG1P3	ENSG00000180747.15	ENST00000522480.5:ENST00000522841.6:ENST00000437413.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	31	2	4.28915	4.3782049999999995	4.46726	0.0427997	0.0319595	0.148082	0.14477
chr17	2302541	2302640	6704723	0	-	0.272727	[0,0.28]	chr17	656377	15	INTRON	INTRON	SMG6	ENSG00000070366.14	ENST00000263073.11	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.28915	4.3782049999999995	4.46726	0.0427997	0.0319595	0.148082	0.14477
chr2	55609675	55609775	1125042	0	-	0.27	[0,0.28]	chr2	120677	52	INTRON	INTRON	PPP4R3B	ENSG00000275052.5	ENST00000616407.2:ENST00000611717.4:ENST00000616288.4:ENST00000470801.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	31	2	4.28915	4.3782049999999995	4.46726	0.0427997	0.0319595	0.148082	0.14477
chr21	43876144	43876244	7413899	0	+	0.28	[0,0.28]	chr21	755688	84	INTRON	INTRON	AGPAT3	ENSG00000160216.21	ENST00000291572.13:ENST00000448287.5	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.28915	4.3782049999999995	4.46726	0.0427997	0.0319595	0.148082	0.14477
chr3	47045687	47045787	1680389	0	-	0.21	[0,0.28]	chr3	171495	26	INTRON	INTRON	SETD2	ENSG00000181555.22	ENST00000691544.1:ENST00000638947.2:ENST00000686876.1:ENST00000687657.1:ENST00000431180.5:ENST00000409792.4:ENST00000330022.11:ENST00000686773.1:ENST00000685005.1:ENST00000690461.1:ENST00000685505.1:ENST00000692883.1:ENST00000693321.1:ENST00000688290.1:ENST00000691902.1:ENST00000690157.1:ENST00000692362.1:ENST00000685237.1:ENST00000693738.1:ENST00000686792.1:ENST00000445387.5:ENST00000479832.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	31	2	4.28915	4.3782049999999995	4.46726	0.0427997	0.0319595	0.148082	0.14477
chr4	106231228	106231328	2220755	0	-	0.24	[0,0.28]	chr4	217438	1	SS5_PROX	SS5_PROX:INTRON	TBCK	ENSG00000145348.17	ENST00000273980.10:ENST00000394708.7:ENST00000510927.5:ENST00000361687.8:ENST00000394706.7:ENST00000467183.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	31	2	4.28915	4.3782049999999995	4.46726	0.0427997	0.0319595	0.148082	0.14477
chr5	55344720	55344811	2355462	0	+	0.241758	[0,0.28]	chr5	227176	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MTREX	ENSG00000039123.16	ENST00000230640.10:ENST00000506750.5:ENST00000504997.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	31	2	4.28915	4.3782049999999995	4.46726	0.0427997	0.0319595	0.148082	0.14477
chr6	131674510	131674579	2960563	0	+	0.26087	[0,0.28]	chr6	278310	1	SS5_PROX	SS5_PROX:INTRON	ENPP3	ENSG00000154269.15	ENST00000427707.5:ENST00000414305.5:ENST00000357639.8:ENST00000358229.6:ENST00000494023.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	31	2	4.28915	4.3782049999999995	4.46726	0.0427997	0.0319595	0.148082	0.14477
chr8	81665652	81665752	3979114	0	-	0.27	[0,0.28]	chr8	364537	46	INTRON	INTRON	IMPA1	ENSG00000133731.10	ENST00000256108.10:ENST00000311489.8:ENST00000449740.6:ENST00000523942.5:ENST00000518188.5:ENST00000523710.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	31	2	4.28915	4.3782049999999995	4.46726	0.0427997	0.0319595	0.148082	0.14477
chr6	13663226	13663326	3058739	0	-	0.3	(0.28,0.32]	chr6	284542	40	INTRON	INTRON	RANBP9	ENSG00000010017.13	ENST00000011619.6	protein_coding	protein_coding	protein_coding	protein_coding	1	73	2	3.95355	4.37805	4.80255	0.0137406	1.55324e-4	0.0949306	0.0106835
chr7	92122229	92122327	3568887	0	-	0.295918	(0.28,0.32]	chr7	332453	33	INTRON	INTRON	CYP51A1:ENSG00000289027	ENSG00000001630.18:ENSG00000289027.1	ENST00000691309.1:ENST00000003100.13:ENST00000692281.1:ENST00000693096.1:ENST00000450723.5:ENST00000422867.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	73	2	3.95355	4.37805	4.80255	0.0137406	1.55324e-4	0.0949306	0.0106835
chr12	34025862	34025957	5110481	0	+	0.357895	(0.35,0.378]	chr12	482571	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	ALG10	ENSG00000139133.7	ENST00000538927.1:ENST00000541875.1:ENST00000541178.1:ENST00000266483.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	29	2	4.19022	4.37786	4.5655	0.0209891	0.0155464	0.122348	0.100909
chr16	11795718	11795818	6445691	0	-	0.37	(0.35,0.378]	chr16	620972	1	SS5_PROX	SS5_PROX:INTRON	ZC3H7A	ENSG00000122299.12	ENST00000355758.9:ENST00000571198.5:ENST00000575170.1:ENST00000576018.5:ENST00000572781.5:ENST00000574995.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	29	2	4.19022	4.37786	4.5655	0.0209891	0.0155464	0.122348	0.100909
chr3	49977483	49977582	1423333	0	+	0.373737	(0.35,0.378]	chr3	149984	17	INTRON	INTRON	RBM6	ENSG00000004534.15	ENST00000442092.5:ENST00000443081.5:ENST00000419610.5:ENST00000441115.5:ENST00000422955.5:ENST00000454079.5:ENST00000266022.9:ENST00000425608.5:ENST00000434592.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	29	2	4.19022	4.37786	4.5655	0.0209891	0.0155464	0.122348	0.100909
chr7	111072540	111072640	3619207	0	-	0.36	(0.35,0.378]	chr7	337093	1086	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	29	2	4.19022	4.37786	4.5655	0.0209891	0.0155464	0.122348	0.100909
chr8	58657997	58658097	3955911	0	-	0.36	(0.35,0.378]	chr8	362934	146	INTRON	INTRON	NSMAF	ENSG00000035681.9	ENST00000038176.8:ENST00000649465.1:ENST00000427130.6:ENST00000518229.5:ENST00000518159.5:ENST00000522645.5:ENST00000519871.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	29	2	4.19022	4.37786	4.5655	0.0209891	0.0155464	0.122348	0.100909
chr8	73867768	73867868	3972149	0	-	0.37	(0.35,0.378]	chr8	364247	369	INTRON	INTRON	ENSG00000258677:UBE2W	ENSG00000258677.2:ENSG00000104343.21	ENST00000358757.5:ENST00000602593.6:ENST00000517608.5:ENST00000650817.1:ENST00000422906.6:ENST00000419880.7:ENST00000651945.1:ENST00000519277.5:ENST00000519255.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	29	2	4.19022	4.37786	4.5655	0.0209891	0.0155464	0.122348	0.100909
chrX	74607686	74607786	7841879	0	-	0.37	(0.35,0.378]	chrX	799787	113	INTRON	INTRON	RLIM	ENSG00000131263.13	ENST00000332687.11:ENST00000349225.2	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	4.19022	4.37786	4.5655	0.0209891	0.0155464	0.122348	0.100909
chr5	62385668	62385767	2362855	0	+	0.363636	(0.35,0.378]	chr5	227829	2	UTR3	UTR3:EXON_MRNA	KIF2A	ENSG00000068796.19	ENST00000401507.7:ENST00000407818.8:ENST00000674632.1:ENST00000674916.1:ENST00000676413.1:ENST00000676122.1:ENST00000674751.1:ENST00000381103.7:ENST00000676271.1:ENST00000674733.1:ENST00000506857.5:ENST00000674752.1:ENST00000675534.1:ENST00000675387.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	68	2	2.78212	4.37776	5.9734	0.0168532	2.0866e-5	0.103549	0.00353198
chr12	91594732	91594832	5385164	0	-	0.31	(0.28,0.32]	chr12	513485	875	INTRON	INTRON	ENSG00000289605	ENSG00000289605.1	ENST00000685093.1	lncRNA	lncRNA	lncRNA	lncRNA	3	108	2	2.81789	4.37691	5.93593	7.16126e-4	3.47635e-4	0.0244108	0.017378
chr11	34460533	34460632	4768878	0	+	0.494949	(0.476,0.515]	chr11	441257	23	INTRON	INTRON	CAT	ENSG00000121691.7	ENST00000241052.5:ENST00000650153.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	106	2	2.6224	4.376695	6.13099	5.5634e-4	2.19436e-5	0.0214853	0.00381314
chr2	15403199	15403298	1071562	0	-	0.363636	(0.35,0.378]	chr2	114344	5	INTRON	INTRON	NBAS	ENSG00000151779.13	ENST00000281513.10:ENST00000442506.5:ENST00000441755.5:ENST00000429842.1	protein_coding	protein_coding	protein_coding	protein_coding	3	107	2	2.35402	4.37659	6.39916	0.00596483	1.77488e-6	0.0674604	8.01078e-4
chr17	29428778	29428878	6586020	0	+	0.44	(0.408,0.44]	chr17	640377	248	INTRON	INTRON	TAOK1	ENSG00000160551.12	ENST00000261716.8:ENST00000583121.5:ENST00000587277.1:ENST00000536202.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	58	2	3.31257	4.375985	5.4394	0.00198621	6.50925e-4	0.0411469	0.0232863
chr7	148756275	148756371	3444268	0	+	0.375	(0.35,0.378]	chr7	321196	18	INTRON	INTRON	CUL1	ENSG00000055130.18	ENST00000409469.5:ENST00000662716.1:ENST00000665936.1:ENST00000663044.1:ENST00000602748.5:ENST00000663835.1:ENST00000655324.1:ENST00000662132.1:ENST00000325222.9:ENST00000656001.1:ENST00000666124.1:ENST00000671421.1:ENST00000671397.1:ENST00000662670.1:ENST00000660240.1:ENST00000662975.1:ENST00000660013.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	61	2	3.21677	4.3757399999999995	5.53471	0.00313804	6.96925e-4	0.0514466	0.024224
chr1	10491777	10491877	23144	0	+	0.49	(0.476,0.515]	chr1	2497	164	INTRON	INTRON	PEX14	ENSG00000142655.13	ENST00000472851.1:ENST00000356607.9:ENST00000491661.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	28	2	4.13586	4.375525	4.61519	0.031846	0.00528365	0.13151	0.0656295
chr10	68761692	68761791	4442693	0	+	0.494949	(0.476,0.515]	chr10	409684	1	INTRON	INTRON	CCAR1	ENSG00000060339.14	ENST00000630771.2:ENST00000543719.5:ENST00000541012.5:ENST00000265872.11:ENST00000539539.5:ENST00000543229.5:ENST00000536012.5:ENST00000543225.5:ENST00000540210.5:ENST00000479143.2:ENST00000543706.1:ENST00000539250.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	28	2	4.13586	4.375525	4.61519	0.031846	0.00528365	0.13151	0.0656295
chr12	42176797	42176897	5312991	0	-	0.5	(0.476,0.515]	chr12	505317	42	INTRON	INTRON	YAF2	ENSG00000015153.15	ENST00000534854.7:ENST00000327791.8:ENST00000380790.4:ENST00000552109.5:ENST00000547622.5:ENST00000547351.5:ENST00000551268.5:ENST00000551528.5:ENST00000548661.5:ENST00000546726.5:ENST00000546972.5:ENST00000547724.1:ENST00000552928.5:ENST00000548917.1:ENST00000547254.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	28	2	4.13586	4.375525	4.61519	0.031846	0.00528365	0.13151	0.0656295
chr12	64620941	64621041	5155102	0	+	0.48	(0.476,0.515]	chr12	488093	94	INTRON	INTRON	RASSF3	ENSG00000153179.13	ENST00000637125.1:ENST00000542104.6:ENST00000283172.8:ENST00000336061.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	28	2	4.13586	4.375525	4.61519	0.031846	0.00528365	0.13151	0.0656295
chr2	108728432	108728531	847499	0	+	0.484848	(0.476,0.515]	chr2	94788	84	INTRON	INTRON	RANBP2	ENSG00000153201.16	ENST00000283195.11:ENST00000425282.4:ENST00000629728.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	28	2	4.13586	4.375525	4.61519	0.031846	0.00528365	0.13151	0.0656295
chr7	157354148	157354248	3455472	0	+	0.51	(0.476,0.515]	chr7	323052	137	INTRON	INTRON	DNAJB6	ENSG00000105993.15	ENST00000441561.5:ENST00000429029.6:ENST00000262177.9:ENST00000486083.6:ENST00000417758.5:ENST00000459889.5:ENST00000443280.5:ENST00000488001.5:ENST00000441291.5:ENST00000437030.5:ENST00000412557.5:ENST00000453383.5:ENST00000439402.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	28	2	4.13586	4.375525	4.61519	0.031846	0.00528365	0.13151	0.0656295
chrX	136878351	136878433	7897668	0	-	0.378049	(0.378,0.408]	chrX	804173	3	SS3_PROX	SS3_PROX:INTRON	RBMX	ENSG00000147274.14	ENST00000431446.7:ENST00000568578.5:ENST00000419968.6:ENST00000464781.5:ENST00000320676.11:ENST00000562646.5:ENST00000565438.1:ENST00000567262.5:ENST00000563370.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	97	2	2.39048	4.375205	6.35993	0.00395852	1.15614e-5	0.057511	0.00268546
chr15	92949080	92949157	6104198	0	+	0.272727	[0,0.28]	chr15	581467	1	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	ENSG00000279765:CHD2	ENSG00000279765.3:ENSG00000173575.22	ENST00000630790.1:ENST00000626874.2:ENST00000394196.9:ENST00000635856.1:ENST00000420239.7:ENST00000625990.3:ENST00000626782.2:ENST00000637572.1:ENST00000637613.1:ENST00000636881.1:ENST00000630016.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	72	2	3.44611	4.3751750000000005	5.30424	0.00584781	0.00185186	0.0667594	0.039946
chr12	112085398	112085497	5415189	0	-	0.313131	(0.28,0.32]	chr12	517230	39	INTRON	INTRON	NAA25	ENSG00000111300.10	ENST00000261745.9:ENST00000552527.5:ENST00000549711.5:ENST00000551858.1:ENST00000547133.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	109	2	2.35314	4.3751549999999995	6.39717	0.00539714	4.86111e-5	0.066545000000000007	0.00605189
chr1	38014761	38014860	74287	0	+	0.434343	(0.408,0.44]	chr1	9592	15	INTRON	INTRON	UTP11	ENSG00000183520.12	ENST00000483182.5:ENST00000373014.5:ENST00000486563.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	81	2	2.55103	4.375145	6.19926	0.00587353	1.98542e-5	0.0690758	0.00360253
chr18	36164074	36164174	6891789	0	+	0.31	(0.28,0.32]	chr18	683063	2	SS3_PROX	SS3_PROX:INTRON	ELP2	ENSG00000134759.14	ENST00000351393.10:ENST00000442325.6:ENST00000358232.11:ENST00000423854.6:ENST00000539560.5:ENST00000350494.10:ENST00000542824.5:ENST00000540799.1:ENST00000542050.5:ENST00000543861.5:ENST00000540766.5:ENST00000541294.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	126	2	2.78411	4.3749649999999995	5.96582	3.40018e-4	3.08567e-4	0.0164308	0.0161584
chr14	21386775	21386874	5835555	0	-	0.515152	(0.476,0.515]	chr14	554613	2	INTRON	INTRON	CHD8	ENSG00000100888.15	ENST00000430710.8:ENST00000646647.2:ENST00000645929.1:ENST00000645206.1:ENST00000557364.6:ENST00000643469.1:ENST00000553870.2:ENST00000555935.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	28	2	4.21964	4.374935000000001	4.53023	0.0167715	0.0119748	0.110511	0.0899583
chr15	44345075	44345175	6013635	0	+	0.5	(0.476,0.515]	chr15	572866	64	INTRON	INTRON	GOLM2	ENSG00000166734.20	ENST00000299957.11:ENST00000557945.5:ENST00000650436.1:ENST00000345795.6:ENST00000559037.1:ENST00000558847.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	28	2	4.21964	4.374935000000001	4.53023	0.0167715	0.0119748	0.110511	0.0899583
chr16	1364965	1365062	6274302	0	+	0.494845	(0.476,0.515]	chr16	599271	7	EXON_MRNA	EXON_MRNA	GNPTG	ENSG00000090581.11	ENST00000684688.1	protein_coding	retained_intron	protein_coding	retained_intron	0	28	2	4.21964	4.374935000000001	4.53023	0.0167715	0.0119748	0.110511	0.0899583
chr2	151446135	151446230	893586	0	+	0.494737	(0.476,0.515]	chr2	98971	3	SS3_PROX	SS3_PROX:INTRON	RIF1	ENSG00000080345.18	ENST00000453091.6:ENST00000428287.6:ENST00000444746.7:ENST00000243326.9:ENST00000414861.6:ENST00000430328.6	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.21964	4.374935000000001	4.53023	0.0167715	0.0119748	0.110511	0.0899583
chr5	67806053	67806153	2635503	0	-	0.49	(0.476,0.515]	chr5	250380	47	INTRON	INTRON	ENSG00000249894	ENSG00000249894.1	ENST00000514791.1	lncRNA	lncRNA	lncRNA	lncRNA	0	28	2	4.21964	4.374935000000001	4.53023	0.0167715	0.0119748	0.110511	0.0899583
chr7	102652980	102653080	3589050	0	-	0.5	(0.476,0.515]	chr7	335089	103	INTRON	INTRON	ENSG00000267645	ENSG00000267645.5	ENST00000476151.5	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	0	28	2	4.21964	4.374935000000001	4.53023	0.0167715	0.0119748	0.110511	0.0899583
chr9	33987337	33987431	4245223	0	-	0.5	(0.476,0.515]	chr9	390457	1	INTRON	INTRON	UBAP2	ENSG00000137073.24	ENST00000379238.7:ENST00000683659.1:ENST00000682239.1:ENST00000683140.1:ENST00000682209.1:ENST00000681980.1:ENST00000360802.6:ENST00000683252.1:ENST00000684158.1:ENST00000682914.1:ENST00000683717.1:ENST00000379239.9:ENST00000683084.1:ENST00000684754.1:ENST00000629575.2:ENST00000684298.1:ENST00000412543.6:ENST00000421278.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	28	2	4.21964	4.374935000000001	4.53023	0.0167715	0.0119748	0.110511	0.0899583
chrX	131823663	131823763	7892929	0	-	0.49	(0.476,0.515]	chrX	803463	54	INTRON	INTRON	FIRRE	ENSG00000213468.7	ENST00000649541.1:ENST00000663405.1:ENST00000665076.1:ENST00000654978.1:ENST00000427391.2:ENST00000668308.1:ENST00000658376.1:ENST00000650184.1:ENST00000653136.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	0	28	2	4.21964	4.374935000000001	4.53023	0.0167715	0.0119748	0.110511	0.0899583
chr4	112149130	112149230	2021134	0	+	0.31	(0.28,0.32]	chr4	200994	30	INTRON	INTRON	FAM241A	ENSG00000174749.6	ENST00000309733.6	protein_coding	protein_coding	protein_coding	protein_coding	1	67	2	3.54514	4.37487	5.2046	0.00448664	0.00100603	0.0593175	0.0292285
chr12	122514855	122514938	5442126	0	-	0.253012	[0,0.28]	chr12	520564	2	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RSRC2	ENSG00000111011.18	ENST00000331738.12:ENST00000532695.5:ENST00000433877.6:ENST00000527173.6:ENST00000525335.6:ENST00000344591.8:ENST00000528263.1:ENST00000527399.3:ENST00000524399.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	85	2	2.44242	4.374725	6.30703	0.0491024	2.7002e-5	0.155269	0.00409374
chr9	131148856	131148953	4215862	0	+	0.185567	[0,0.28]	chr9	386572	9	INTRON	INTRON	NUP214	ENSG00000126883.19	ENST00000695497.1:ENST00000695498.1:ENST00000695496.1:ENST00000695495.1:ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000651022.1:ENST00000525980.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	117	2	2.74119	4.37463	6.00807	0.00126858	6.0063e-4	0.0330485	0.0226059
chr4	153360111	153360210	2066690	0	+	0.292929	(0.28,0.32]	chr4	204512	11	INTRON	INTRON	MND1	ENSG00000121211.8	ENST00000622785.4:ENST00000509752.5:ENST00000240488.8:ENST00000508731.5:ENST00000504860.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	77	2	3.60568	4.374545	5.14341	0.00185891	0.00127168	0.039946	0.032635
chr19	34455640	34455737	7053403	0	+	0.494845	(0.476,0.515]	chr19	703551	7	INTRON	INTRON	UBA2	ENSG00000126261.13	ENST00000586313.1:ENST00000246548.9:ENST00000439527.6:ENST00000591016.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	107	2	2.76757	4.3744250000000005	5.98128	2.52719e-4	4.70386e-5	0.0141489	0.00593131
chr12	108523734	108523815	5405359	0	-	0.308642	(0.28,0.32]	chr12	515823	1	SS3_PROX	SS3_PROX:INTRON	SART3	ENSG00000075856.12	ENST00000546815.6:ENST00000651280.1:ENST00000228284.8:ENST00000546728.5:ENST00000431469.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	32	2	3.88145	4.37438	4.86731	0.0561985	0.0116253	0.18407	0.0889104
chr14	58263523	58263613	5731097	0	+	0.288889	(0.28,0.32]	chr14	544108	1	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	PSMA3	ENSG00000100567.13	ENST00000216455.9:ENST00000554812.5:ENST00000557087.5:ENST00000555931.5:ENST00000412908.6:ENST00000555743.1:ENST00000557508.5:ENST00000553677.1:ENST00000554207.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	30	2	4.14214	4.37412	4.6061	0.0579756	0.0102724	0.167723	0.089002
chr16	24144210	24144310	6326854	0	+	0.31	(0.28,0.32]	chr16	605753	199	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1	protein_coding	protein_coding	protein_coding	protein_coding	0	30	2	4.14214	4.37412	4.6061	0.0579756	0.0102724	0.167723	0.089002
chr2	26228597	26228696	1085941	0	-	0.292929	(0.28,0.32]	chr2	116048	131	INTRON	INTRON	HADHA	ENSG00000084754.12	ENST00000380649.8:ENST00000644428.1:ENST00000492433.2:ENST00000643057.1:ENST00000645274.1:ENST00000643233.1:ENST00000643063.1:ENST00000646483.1:ENST00000471743.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	30	2	4.14214	4.37412	4.6061	0.0579756	0.0102724	0.167723	0.089002
chr4	48509263	48509361	2136831	0	-	0.306122	(0.28,0.32]	chr4	210642	28	INTRON	INTRON	FRYL	ENSG00000075539.15	ENST00000358350.9:ENST00000507873.7:ENST00000503238.6:ENST00000641795.1:ENST00000512810.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	30	2	4.14214	4.37412	4.6061	0.0579756	0.0102724	0.167723	0.089002
chr7	111376573	111376672	3622248	0	-	0.292929	(0.28,0.32]	chr7	337093	4127	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	30	2	4.14214	4.37412	4.6061	0.0579756	0.0102724	0.167723	0.089002
chr8	6731226	6731326	3695232	0	+	0.31	(0.28,0.32]	chr8	342840	4	SS5_PROX	SS5_PROX:INTRON	AGPAT5	ENSG00000155189.12	ENST00000285518.11:ENST00000523234.5:ENST00000518327.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	30	2	4.14214	4.37412	4.6061	0.0579756	0.0102724	0.167723	0.089002
chr8	67125455	67125555	3777265	0	+	0.32	(0.28,0.32]	chr8	350363	19	INTRON	INTRON	CSPP1	ENSG00000104218.16	ENST00000676113.1:ENST00000675306.2:ENST00000678156.1:ENST00000262210.11:ENST00000678017.1:ENST00000675869.1:ENST00000678542.1:ENST00000677619.1:ENST00000676605.1:ENST00000676471.1:ENST00000677256.1:ENST00000676847.1:ENST00000677009.1:ENST00000675820.1:ENST00000676317.1:ENST00000677592.1:ENST00000676573.1:ENST00000678318.1:ENST00000677473.1:ENST00000674993.1:ENST00000678553.1:ENST00000679226.1:ENST00000676882.1:ENST00000675955.1:ENST00000678728.1:ENST00000677430.1:ENST00000677455.1:ENST00000678616.1:ENST00000678362.1:ENST00000679112.1:ENST00000678645.1:ENST00000676567.1:ENST00000677845.1:ENST00000519163.6:ENST00000676858.1:ENST00000678747.1:ENST00000519668.1:ENST00000676697.1:ENST00000678216.1:ENST00000677855.1:ENST00000676695.1:ENST00000677836.1:ENST00000677070.1:ENST00000678444.1:ENST00000676534.1:ENST00000678138.1:ENST00000678807.1:ENST00000677052.1:ENST00000679274.1:ENST00000679042.1:ENST00000678345.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	30	2	4.14214	4.37412	4.6061	0.0579756	0.0102724	0.167723	0.089002
chr8	81705905	81706005	3979411	0	-	0.32	(0.28,0.32]	chr8	364616	24	INTRON	INTRON	ZFAND1	ENSG00000104231.11	ENST00000524305.5:ENST00000220669.10:ENST00000523096.5:ENST00000522520.5:ENST00000522032.1:ENST00000519464.5:ENST00000521895.5:ENST00000521287.5:ENST00000523431.5:ENST00000520635.5:ENST00000519523.5:ENST00000517588.5:ENST00000520604.5:ENST00000523361.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	30	2	4.14214	4.37412	4.6061	0.0579756	0.0102724	0.167723	0.089002
chr9	135820338	135820438	4371382	0	-	0.31	(0.28,0.32]	chr9	402422	1	SS5_PROX	SS5_PROX:INTRON	CAMSAP1	ENSG00000130559.19	ENST00000389532.9:ENST00000312405.10:ENST00000483991.5:ENST00000409386.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	30	2	4.14214	4.37412	4.6061	0.0579756	0.0102724	0.167723	0.089002
chrX	154746062	154746162	7915270	0	-	0.3	(0.28,0.32]	chrX	806107	294	INTRON	INTRON	GAB3	ENSG00000160219.12	ENST00000496390.5:ENST00000424127.3:ENST00000369575.7:ENST00000369568.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	30	2	4.14214	4.37412	4.6061	0.0579756	0.0102724	0.167723	0.089002
chr12	123406613	123406708	5242808	0	+	0.452632	(0.44,0.476]	chr12	498217	12	INTRON	INTRON	KMT5A	ENSG00000183955.14	ENST00000402868.8:ENST00000437519.5:ENST00000437502.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	28	2	4.12843	4.373984999999999	4.61954	0.0337192	0.00506805	0.134145	0.0646039
chr2	61411985	61412084	1129964	0	-	0.474747	(0.44,0.476]	chr2	121491	55	INTRON	INTRON	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000453133.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	28	2	4.12843	4.373984999999999	4.61954	0.0337192	0.00506805	0.134145	0.0646039
chr22	19342302	19342401	7553506	0	-	0.444444	(0.44,0.476]	chr22	772184	104	INTRON	INTRON	HIRA	ENSG00000100084.14	ENST00000263208.5:ENST00000340170.8	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.12843	4.373984999999999	4.61954	0.0337192	0.00506805	0.134145	0.0646039
chr22	20513610	20513710	7479407	0	+	0.47	(0.44,0.476]	chr22	762951	48	INTRON	INTRON	MED15	ENSG00000099917.17	ENST00000445987.5:ENST00000444094.5:ENST00000414658.5:ENST00000486656.5:ENST00000433831.5:ENST00000432052.5:ENST00000292733.11:ENST00000263205.11:ENST00000477824.5:ENST00000406969.5:ENST00000382974.6:ENST00000441501.5:ENST00000438962.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	28	2	4.12843	4.373984999999999	4.61954	0.0337192	0.00506805	0.134145	0.0646039
chr3	138757176	138757276	1830720	0	-	0.45	(0.44,0.476]	chr3	184043	8	INTRON	INTRON	PIK3CB	ENSG00000051382.9	ENST00000674063.1:ENST00000289153.6:ENST00000477593.5:ENST00000462898.5:ENST00000483968.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	28	2	4.12843	4.373984999999999	4.61954	0.0337192	0.00506805	0.134145	0.0646039
chr3	183854047	183854146	1881292	0	-	0.464646	(0.44,0.476]	chr3	188011	94	INTRON	INTRON	PARL	ENSG00000175193.14	ENST00000639100.1:ENST00000317096.9:ENST00000638817.1:ENST00000311101.9:ENST00000435888.5:ENST00000639900.1:ENST00000421484.5:ENST00000449306.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	28	2	4.12843	4.373984999999999	4.61954	0.0337192	0.00506805	0.134145	0.0646039
chr4	921950	922050	2094195	0	-	0.46	(0.44,0.476]	chr4	206992	63	INTRON	INTRON	GAK	ENSG00000178950.18	ENST00000314167.9:ENST00000511163.5:ENST00000505819.5:ENST00000507580.5:ENST00000502656.5:ENST00000512325.3:ENST00000628912.1:ENST00000513935.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	28	2	4.12843	4.373984999999999	4.61954	0.0337192	0.00506805	0.134145	0.0646039
chr6	167043318	167043418	3033819	0	+	0.47	(0.44,0.476]	chr6	282698	33	UTR3	UTR3:EXON_MRNA:INTRON	CEP43	ENSG00000213066.13	ENST00000366847.9:ENST00000646989.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	28	2	4.12843	4.373984999999999	4.61954	0.0337192	0.00506805	0.134145	0.0646039
chrX	120197097	120197197	7875559	0	-	0.45	(0.44,0.476]	chrX	802060	165	INTRON	INTRON	NKAPP1	ENSG00000233382.8	ENST00000555168.1:ENST00000554109.1:ENST00000692735.1:ENST00000688620.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	0	28	2	4.12843	4.373984999999999	4.61954	0.0337192	0.00506805	0.134145	0.0646039
chr2	171323576	171323675	1264888	0	-	0.333333	(0.32,0.35]	chr2	133948	80	UTR3	UTR3:EXON_MRNA	METTL8	ENSG00000123600.21	ENST00000612742.5:ENST00000375258.9:ENST00000447486.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	31	2	3.91486	4.373865	4.83287	0.0450361	0.0095071	0.163255	0.0817766
chr3	31593315	31593415	1392004	0	+	0.33	(0.32,0.35]	chr3	145698	129	INTRON	INTRON	STT3B	ENSG00000163527.10	ENST00000453168.5:ENST00000295770.4:ENST00000423527.5:ENST00000462235.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	31	2	3.91486	4.373865	4.83287	0.0450361	0.0095071	0.163255	0.0817766
chrX	101146677	101146777	7694636	0	+	0.35	(0.32,0.35]	chrX	787418	4	SS5_PROX	SS5_PROX:INTRON	CENPI	ENSG00000102384.14	ENST00000684367.1:ENST00000423383.3:ENST00000682095.1:ENST00000372927.5	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	3.91486	4.373865	4.83287	0.0450361	0.0095071	0.163255	0.0817766
chr5	149753166	149753266	2517281	0	+	0.4	(0.378,0.408]	chr5	240647	127	INTRON	INTRON	PPARGC1B	ENSG00000155846.17	ENST00000360453.8:ENST00000394320.7:ENST00000461780.1:ENST00000309241.10	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	59	2	3.27907	4.3736999999999995	5.46833	0.0023379	7.05018e-4	0.0442989	0.024224
chr1	1794593	1794692	361862	0	-	0.292929	(0.28,0.32]	chr1	42263	5	INTRON	INTRON	GNB1	ENSG00000078369.18	ENST00000610897.4:ENST00000615252.4:ENST00000378609.9:ENST00000471354.1:ENST00000439272.6:ENST00000434686.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	30	2	4.23719	4.3735	4.50981	0.0275554	0.0264147	0.133676	0.123904
chr10	74848489	74848589	4461620	0	+	0.29	(0.28,0.32]	chr10	411665	13	INTRON	INTRON	KAT6B	ENSG00000156650.14	ENST00000648725.1:ENST00000648159.1:ENST00000649006.1:ENST00000649463.1:ENST00000372725.6:ENST00000650232.1:ENST00000648370.1:ENST00000648899.1:ENST00000648483.1:ENST00000648892.1:ENST00000372724.6:ENST00000649657.1:ENST00000372714.6:ENST00000649442.1:ENST00000287239.10:ENST00000648048.1:ENST00000647666.1:ENST00000649375.1:ENST00000650330.1:ENST00000650380.1:ENST00000647637.1:ENST00000372711.2:ENST00000648369.1:ENST00000650048.1:ENST00000647642.1:ENST00000650517.1:ENST00000647554.1:ENST00000648302.1:ENST00000649645.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	30	2	4.23719	4.3735	4.50981	0.0275554	0.0264147	0.133676	0.123904
chr18	2747321	2747421	6865818	0	+	0.31	(0.28,0.32]	chr18	680105	4	SS3_PROX	SS3_PROX:INTRON	SMCHD1	ENSG00000101596.17	ENST00000320876.11:ENST00000688342.1:ENST00000693213.1:ENST00000577880.5:ENST00000584897.5:ENST00000583441.2:ENST00000690757.1:ENST00000686763.1:ENST00000686864.1:ENST00000688708.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	30	2	4.23719	4.3735	4.50981	0.0275554	0.0264147	0.133676	0.123904
chr19	16219054	16219153	7026788	0	+	0.292929	(0.28,0.32]	chr19	699349	83	INTRON	INTRON	AP1M1	ENSG00000072958.9	ENST00000590756.5:ENST00000291439.8:ENST00000429941.6:ENST00000444449.6:ENST00000591966.1:ENST00000586461.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	30	2	4.23719	4.3735	4.50981	0.0275554	0.0264147	0.133676	0.123904
chr3	3140209	3140309	1349589	0	+	0.32	(0.28,0.32]	chr3	141865	3	SS3_PROX	SS3_PROX:SS5_PROX:INTRON	TRNT1	ENSG00000072756.17	ENST00000651591.1:ENST00000251607.11:ENST00000651316.1:ENST00000280591.10:ENST00000650755.1:ENST00000650989.1:ENST00000651093.1:ENST00000651352.1:ENST00000434583.5:ENST00000397779.3:ENST00000650839.1:ENST00000482311.1:ENST00000650814.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	30	2	4.23719	4.3735	4.50981	0.0275554	0.0264147	0.133676	0.123904
chr3	61006056	61006156	1719679	0	-	0.31	(0.28,0.32]	chr3	176157	1837	INTRON	INTRON	FHIT	ENSG00000189283.10	ENST00000492590.6:ENST00000476844.5:ENST00000468189.5:ENST00000488467.5:ENST00000490952.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	30	2	4.23719	4.3735	4.50981	0.0275554	0.0264147	0.133676	0.123904
chr4	86957855	86957955	1994024	0	+	0.3	(0.28,0.32]	chr4	199032	89	INTRON	INTRON	AFF1	ENSG00000172493.23	ENST00000504956.5:ENST00000395146.9:ENST00000507468.5:ENST00000674009.1:ENST00000503477.5:ENST00000511996.5:ENST00000511442.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	30	2	4.23719	4.3735	4.50981	0.0275554	0.0264147	0.133676	0.123904
chr6	131739530	131739626	2961231	0	+	0.302083	(0.28,0.32]	chr6	278398	10	INTRON	INTRON	ENPP3	ENSG00000154269.15	ENST00000414305.5:ENST00000357639.8:ENST00000358229.6	protein_coding	protein_coding	protein_coding	protein_coding	0	30	2	4.23719	4.3735	4.50981	0.0275554	0.0264147	0.133676	0.123904
chr7	40049503	40049602	3311624	0	+	0.30303	(0.28,0.32]	chr7	307518	4	INTRON	INTRON	CDK13	ENSG00000065883.17	ENST00000340829.10:ENST00000181839.10:ENST00000613626.4:ENST00000646039.1:ENST00000643859.1:ENST00000484589.2:ENST00000643915.1:ENST00000645470.1:ENST00000642592.1	protein_coding	protein_coding	protein_coding	protein_coding	0	30	2	4.23719	4.3735	4.50981	0.0275554	0.0264147	0.133676	0.123904
chr14	21063228	21063328	5834398	0	-	0.39	(0.378,0.408]	chr14	554395	148	INTRON	INTRON	NDRG2	ENSG00000165795.25	ENST00000403829.7	protein_coding	protein_coding	protein_coding	protein_coding	2	131	2	4.1994	4.373374999999999	4.54735	5.19961e-5	3.0154e-6	0.00627105	0.00111586
chr1	229469786	229469884	652932	0	-	0.469388	(0.44,0.476]	chr1	77327	27	INTRON	INTRON	NUP133	ENSG00000069248.12	ENST00000261396.6	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.22393	4.373315	4.5227	0.0162322	0.0128818	0.109464	0.0926667
chr10	18541683	18541782	4569605	0	-	0.474747	(0.44,0.476]	chr10	421460	2	EXON_LNCRNA	EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ENSG00000240291	ENSG00000240291.1	ENST00000425669.1:ENST00000436485.1	lncRNA	lncRNA	lncRNA	lncRNA	0	28	2	4.22393	4.373315	4.5227	0.0162322	0.0128818	0.109464	0.0926667
chr12	368694	368794	5254884	0	-	0.45	(0.44,0.476]	chr12	500028	22	INTRON	INTRON	KDM5A	ENSG00000073614.13	ENST00000399788.7:ENST00000544760.1:ENST00000535014.5:ENST00000536014.5	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.22393	4.373315	4.5227	0.0162322	0.0128818	0.109464	0.0926667
chr18	9775757	9775857	6872453	0	+	0.46	(0.44,0.476]	chr18	680802	4	SS5_PROX	SS5_PROX:INTRON	RAB31	ENSG00000168461.13	ENST00000578734.5:ENST00000578921.6:ENST00000581109.1:ENST00000435762.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	28	2	4.22393	4.373315	4.5227	0.0162322	0.0128818	0.109464	0.0926667
chr18	13066538	13066637	6877347	0	+	0.444444	(0.44,0.476]	chr18	681458	69	INTRON	INTRON	CEP192	ENSG00000101639.19	ENST00000325971.12:ENST00000506447.5:ENST00000513432.5:ENST00000511820.6:ENST00000510237.5:ENST00000589993.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	28	2	4.22393	4.373315	4.5227	0.0162322	0.0128818	0.109464	0.0926667
chr2	10164247	10164347	691146	0	+	0.45	(0.44,0.476]	chr2	81109	81	INTRON	INTRON	RRM2	ENSG00000171848.16	ENST00000641498.1:ENST00000381786.7	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	0	28	2	4.22393	4.373315	4.5227	0.0162322	0.0128818	0.109464	0.0926667
chr2	108620050	108620150	846710	0	+	0.46	(0.44,0.476]	chr2	94691	124	INTRON	INTRON	LIMS1	ENSG00000169756.17	ENST00000695516.1:ENST00000544547.6:ENST00000695517.1:ENST00000695518.1:ENST00000695519.1:ENST00000332345.10:ENST00000695520.1:ENST00000393310.5:ENST00000695521.1:ENST00000410093.5	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.22393	4.373315	4.5227	0.0162322	0.0128818	0.109464	0.0926667
chr4	32054186	32054286	1941990	0	+	0.45	(0.44,0.476]	chr4	194727	560	INTRON	INTRON	LINC02506	ENSG00000251129.3	ENST00000662669.1:ENST00000665582.2:ENST00000667252.2:ENST00000660373.2:ENST00000684849.1:ENST00000513211.2:ENST00000659613.1:ENST00000657576.1:ENST00000686730.1:ENST00000685407.1:ENST00000685455.1:ENST00000655951.1	lncRNA	lncRNA	lncRNA	lncRNA	0	28	2	4.22393	4.373315	4.5227	0.0162322	0.0128818	0.109464	0.0926667
chrX	136911659	136911757	7727482	0	+	0.469388	(0.44,0.476]	chrX	790754	15	INTRON	INTRON	TM9SF5P	ENSG00000234062.9	ENST00000650669.2:ENST00000687469.1:ENST00000431464.6:ENST00000685550.1:ENST00000685929.1:ENST00000424306.5:ENST00000687978.1:ENST00000688713.1:ENST00000693626.1:ENST00000686432.1:ENST00000693698.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	28	2	4.22393	4.373315	4.5227	0.0162322	0.0128818	0.109464	0.0926667
chr6	87529349	87529445	3152013	0	-	0.385417	(0.378,0.408]	chr6	294003	16	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	RARS2	ENSG00000146282.19	ENST00000691533.1:ENST00000493269.2:ENST00000685069.1:ENST00000691725.1:ENST00000369536.10:ENST00000693431.1:ENST00000685408.1:ENST00000693327.1:ENST00000691205.1:ENST00000689174.1:ENST00000692684.1:ENST00000686988.1:ENST00000690622.1:ENST00000689206.1:ENST00000688532.1:ENST00000686154.1:ENST00000686407.1:ENST00000685701.1:ENST00000689561.1:ENST00000691238.1:ENST00000685336.1:ENST00000686284.1:ENST00000687586.1:ENST00000685376.1:ENST00000685881.1:ENST00000691815.1:ENST00000687090.1:ENST00000451155.2:ENST00000687437.1:ENST00000692394.1:ENST00000687729.1:ENST00000693605.1:ENST00000687909.1:ENST00000688391.1:ENST00000690884.1:ENST00000692843.1:ENST00000684790.1:ENST00000692270.1:ENST00000685219.1:ENST00000689952.1:ENST00000687579.1:ENST00000686857.1:ENST00000690205.1:ENST00000690705.1:ENST00000686371.1:ENST00000686142.1:ENST00000688106.1:ENST00000686196.1:ENST00000688842.1:ENST00000687078.1:ENST00000690555.1:ENST00000692934.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	80	2	3.27784	4.373085	5.46833	7.05018e-4	2.17147e-4	0.024224	0.0129235
chr1	53953668	53953767	106979	0	+	0.292929	(0.28,0.32]	chr1	13956	8	INTRON	INTRON	LRRC42	ENSG00000116212.15	ENST00000371368.5:ENST00000371370.8:ENST00000319223.8:ENST00000444987.1	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.01002	4.37238	4.73474	0.0434868	0.0162835	0.162255	0.101453
chr16	89363476	89363576	6542315	0	-	0.31	(0.28,0.32]	chr16	634225	14	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000647238.1:ENST00000644045.1:ENST00000643147.1:ENST00000644139.1:ENST00000568512.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	31	2	4.01002	4.37238	4.73474	0.0434868	0.0162835	0.162255	0.101453
chr8	6712131	6712230	3695039	0	+	0.292929	(0.28,0.32]	chr8	342828	22	INTRON	INTRON	AGPAT5	ENSG00000155189.12	ENST00000285518.11:ENST00000523234.5:ENST00000518327.1:ENST00000523586.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	31	2	4.01002	4.37238	4.73474	0.0434868	0.0162835	0.162255	0.101453
chr17	40024481	40024579	6767611	0	-	0.428571	(0.408,0.44]	chr17	665746	7	INTRON	INTRON	MED24	ENSG00000008838.21	ENST00000394126.5:ENST00000356271.7:ENST00000394128.7:ENST00000394127.6:ENST00000535508.6:ENST00000501516.7:ENST00000535071.6:ENST00000580720.1:ENST00000580885.5:ENST00000581058.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	62	2	3.2451	4.37222	5.49934	0.00337792	1.5076e-4	0.0516884	0.0106137
chr5	131781829	131781929	2720593	0	-	0.37	(0.35,0.378]	chr5	255730	368	INTRON	INTRON	FNIP1	ENSG00000217128.13	ENST00000510461.6:ENST00000307954.12:ENST00000307968.11:ENST00000511848.1	protein_coding	protein_coding	protein_coding	protein_coding	1	62	2	3.69928	4.372199999999999	5.04512	0.00393262	3.94786e-4	0.0548259	0.0178567
chr9	77786262	77786362	4269489	0	-	0.54	(0.515,0.57]	chr9	392856	572	INTRON	INTRON	GNAQ	ENSG00000156052.11	ENST00000286548.9	protein_coding	protein_coding	protein_coding	protein_coding	1	53	2	3.31388	4.372035	5.43019	0.00174704	2.60422e-4	0.0386026	0.0148796
chr2	201184295	201184392	982175	0	+	0.453608	(0.44,0.476]	chr2	105457	6	INTRON	INTRON	CASP10	ENSG00000003400.16	ENST00000374650.8:ENST00000485408.2:ENST00000492363.6:ENST00000696191.1:ENST00000460140.5:ENST00000313728.12:ENST00000272879.9:ENST00000346817.10:ENST00000696199.1:ENST00000286186.11:ENST00000438843.6:ENST00000471191.2:ENST00000696190.1:ENST00000448480.1:ENST00000484926.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	62	2	3.39322	4.37177	5.35032	0.00187283	3.02713e-4	0.0390476	0.0155054
chr9	147125	147222	4226966	0	-	0.443299	(0.44,0.476]	chr9	388554	11	EXON_MRNA	EXON_MRNA:INTRON	CBWD1	ENSG00000172785.19	ENST00000356521.9:ENST00000377400.8:ENST00000619157.4:ENST00000314367.14:ENST00000612045.4:ENST00000475411.5:ENST00000611457.4:ENST00000465014.6:ENST00000613508.4:ENST00000382447.8:ENST00000487575.6:ENST00000495302.5:ENST00000616944.4:ENST00000613355.4:ENST00000498044.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	62	2	3.39322	4.37177	5.35032	0.00187283	3.02713e-4	0.0390476	0.0155054
chr20	35643652	35643751	7335565	0	-	0.484848	(0.476,0.515]	chr20	747284	104	INTRON	INTRON	CPNE1	ENSG00000214078.13	ENST00000352393.8:ENST00000397443.7:ENST00000317677.9:ENST00000483359.5:ENST00000397442.5:ENST00000401607.6:ENST00000437340.5:ENST00000430570.5:ENST00000412056.5:ENST00000414664.5:ENST00000416778.5:ENST00000439806.6:ENST00000439669.5:ENST00000420363.5:ENST00000434795.5:ENST00000440240.5:ENST00000458038.5:ENST00000437100.5:ENST00000414711.5:ENST00000435747.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	94	2	2.45107	4.371675	6.29228	0.00301722	9.26816e-6	0.0507519	0.00235239
chr21	45407371	45407471	7419529	0	+	0.46	(0.44,0.476]	chr21	756409	15	INTRON	INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1	protein_coding	protein_coding	protein_coding	protein_coding	2	86	2	3.19785	4.371455	5.54506	4.51048e-4	1.21665e-4	0.0196417	0.00942499
chr7	111267797	111267897	3621160	0	-	0.35	(0.32,0.35]	chr7	337093	3039	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	63	2	3.45772	4.37111	5.2845	0.00240071	0.00128487	0.0440612	0.0333518
chr11	72030282	72030380	4976325	0	-	0.428571	(0.408,0.44]	chr11	470092	6	INTRON	INTRON	NUMA1	ENSG00000137497.19	ENST00000393695.8:ENST00000358965.10:ENST00000351960.10:ENST00000613205.4:ENST00000620566.4:ENST00000542977.5:ENST00000537217.5:ENST00000540843.5:ENST00000534987.5:ENST00000536119.5:ENST00000544238.5:ENST00000543937.5:ENST00000543009.5:ENST00000537930.5:ENST00000544129.5:ENST00000535947.5:ENST00000535087.5:ENST00000368959.9:ENST00000541719.5:ENST00000366394.7:ENST00000541641.5:ENST00000537905.5:ENST00000535111.5:ENST00000535838.5:ENST00000546131.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	28	2	4.12187	4.37098	4.62009	0.0354689	0.00504155	0.137535	0.0646039
chr12	79923702	79923802	5376421	0	-	0.41	(0.408,0.44]	chr12	512797	99	INTRON	INTRON	PPP1R12A	ENSG00000058272.19	ENST00000261207.9:ENST00000450142.7:ENST00000437004.6:ENST00000550107.5:ENST00000547330.5:ENST00000550510.5	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.12187	4.37098	4.62009	0.0354689	0.00504155	0.137535	0.0646039
chr19	5063228	5063328	7004366	0	+	0.42	(0.408,0.44]	chr19	694835	152	INTRON	INTRON	KDM4B	ENSG00000127663.15	ENST00000159111.9:ENST00000611640.4:ENST00000381759.8:ENST00000536461.5:ENST00000592175.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	28	2	4.12187	4.37098	4.62009	0.0354689	0.00504155	0.137535	0.0646039
chr7	6814453	6814548	3478786	0	-	0.410526	(0.408,0.44]	chr7	325568	3	SS5_PROX	SS5_PROX:INTRON	CCZ1B	ENSG00000146574.16	ENST00000316731.13:ENST00000626257.2:ENST00000485620.1:ENST00000411858.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	28	2	4.12187	4.37098	4.62009	0.0354689	0.00504155	0.137535	0.0646039
chr7	67119915	67120015	3327883	0	+	0.42	(0.408,0.44]	chr7	309460	19	INTRON	INTRON	TYW1	ENSG00000198874.14	ENST00000359626.10:ENST00000361660.8:ENST00000495971.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	28	2	4.12187	4.37098	4.62009	0.0354689	0.00504155	0.137535	0.0646039
chr22	40358068	40358166	7519916	0	+	0.408163	(0.378,0.408]	chr22	768267	34	INTRON	INTRON	ADSL	ENSG00000239900.14	ENST00000623632.4:ENST00000679723.1:ENST00000623063.3:ENST00000637666.2:ENST00000680978.1:ENST00000625194.4:ENST00000681159.1:ENST00000342312.9:ENST00000636714.1:ENST00000680444.1:ENST00000480775.3:ENST00000637669.1:ENST00000216194.11:ENST00000675622.1:ENST00000679656.1:ENST00000636265.1:ENST00000623978.3:ENST00000477111.2:ENST00000623287.4:ENST00000679609.1:ENST00000624474.1:ENST00000680378.1:ENST00000636124.1:ENST00000638161.1:ENST00000679845.1:ENST00000674592.1:ENST00000636433.1:ENST00000679904.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	88	2	2.39444	4.370465	6.34649	0.0122858	1.6514e-6	0.091087	7.76759e-4
chr7	121047792	121047892	3394230	0	+	0.6	(0.57,1]	chr7	317688	4	INTRON	INTRON	CPED1	ENSG00000106034.18	ENST00000340646.9:ENST00000310396.10:ENST00000428526.5:ENST00000495036.5:ENST00000450913.6:ENST00000520801.5:ENST00000521774.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	110	2	3.674	4.3703899999999996	5.06678	9.81688e-7	7.01257e-9	6.14551e-4	2.82262e-5
chr1	100277057	100277157	172382	0	+	0.33	(0.32,0.35]	chr1	18757	4	SS3_PROX	SS3_PROX:INTRON	RTCA	ENSG00000137996.13	ENST00000370128.9:ENST00000260563.4	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	4.273	4.37029	4.46758	0.0368357	0.0119306	0.138959	0.0962115
chr12	14474689	14474789	5083826	0	+	0.34	(0.32,0.35]	chr12	480478	77	INTRON	INTRON	ATF7IP	ENSG00000171681.13	ENST00000537653.5:ENST00000261168.9:ENST00000543189.5:ENST00000536444.5:ENST00000544627.5:ENST00000540793.5:ENST00000535179.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	29	2	4.273	4.37029	4.46758	0.0368357	0.0119306	0.138959	0.0962115
chr15	75884515	75884613	6065480	0	+	0.336735	(0.32,0.35]	chr15	577588	7	INTRON	INTRON	UBE2Q2	ENSG00000140367.12	ENST00000569423.5:ENST00000267938.9:ENST00000561723.5:ENST00000561851.5:ENST00000426727.6:ENST00000567921.1:ENST00000563966.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	29	2	4.273	4.37029	4.46758	0.0368357	0.0119306	0.138959	0.0962115
chr20	56373956	56374056	7358697	0	-	0.35	(0.32,0.35]	chr20	750345	4	SS3_PROX	SS3_PROX:INTRON	AURKA	ENSG00000087586.18	ENST00000395914.5:ENST00000395913.7:ENST00000312783.10:ENST00000395911.5:ENST00000395915.8:ENST00000347343.6:ENST00000371356.6:ENST00000395907.5:ENST00000441357.5	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	4.273	4.37029	4.46758	0.0368357	0.0119306	0.138959	0.0962115
chr3	99831340	99831440	1462035	0	+	0.34	(0.32,0.35]	chr3	153488	129	INTRON	INTRON	CMSS1	ENSG00000184220.12	ENST00000463526.1:ENST00000421999.8:ENST00000491299.5:ENST00000496116.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	29	2	4.273	4.37029	4.46758	0.0368357	0.0119306	0.138959	0.0962115
chr4	48144184	48144282	2135428	0	-	0.326531	(0.32,0.35]	chr4	210526	24	INTRON	INTRON	TEC	ENSG00000135605.13	ENST00000381501.8:ENST00000505452.5:ENST00000515146.1:ENST00000511471.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	29	2	4.273	4.37029	4.46758	0.0368357	0.0119306	0.138959	0.0962115
chr7	5052643	5052741	3271785	0	+	0.346939	(0.32,0.35]	chr7	304061	42	INTRON	INTRON	RBAK	ENSG00000146587.18	ENST00000353796.7:ENST00000396912.2	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	4.273	4.37029	4.46758	0.0368357	0.0119306	0.138959	0.0962115
chr7	131383043	131383143	3416995	0	+	0.34	(0.32,0.35]	chr7	319193	72	INTRON	INTRON	MKLN1	ENSG00000128585.18	ENST00000421797.6:ENST00000416992.6:ENST00000429546.5:ENST00000446815.5:ENST00000494286.5:ENST00000352689.11:ENST00000494785.5:ENST00000458153.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	29	2	4.273	4.37029	4.46758	0.0368357	0.0119306	0.138959	0.0962115
chr1	8583791	8583891	371438	0	-	0.32	(0.28,0.32]	chr1	43517	259	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000400907.6:ENST00000656437.1:ENST00000659924.1:ENST00000480342.5:ENST00000469251.1:ENST00000514428.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	72	2	3.04485	4.37028	5.69571	0.00894006	2.03259e-4	0.0799922	0.0124395
chr1	246155769	246155869	677190	0	-	0.41	(0.408,0.44]	chr1	79721	595	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000391836.3:ENST00000453676.5:ENST00000462422.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	28	2	4.22447	4.370255	4.51604	0.0161655	0.0137419	0.109464	0.0949306
chr11	61147552	61147651	4955595	0	-	0.414141	(0.408,0.44]	chr11	465541	22	INTRON	INTRON	VPS37C	ENSG00000167987.11	ENST00000301765.10:ENST00000538036.1:ENST00000536000.1:ENST00000535818.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	28	2	4.22447	4.370255	4.51604	0.0161655	0.0137419	0.109464	0.0949306
chr11	117164392	117164489	4869297	0	+	0.42268	(0.408,0.44]	chr11	454459	1	INTRON	INTRON	PAFAH1B2	ENSG00000168092.14	ENST00000419197.6:ENST00000527958.6:ENST00000304808.10:ENST00000529887.6:ENST00000526888.1:ENST00000530272.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	28	2	4.22447	4.370255	4.51604	0.0161655	0.0137419	0.109464	0.0949306
chr12	57426729	57426828	5339216	0	-	0.414141	(0.408,0.44]	chr12	510716	306	INTRON	INTRON	R3HDM2	ENSG00000179912.21	ENST00000402412.6:ENST00000347140.7:ENST00000634871.1:ENST00000448732.1	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.22447	4.370255	4.51604	0.0161655	0.0137419	0.109464	0.0949306
chr14	105266031	105266131	5974003	0	-	0.42	(0.408,0.44]	chr14	568040	91	INTRON	INTRON	BRF1	ENSG00000185024.18	ENST00000547530.7:ENST00000379937.6:ENST00000619151.4:ENST00000327359.7:ENST00000440513.7:ENST00000546417.5:ENST00000550692.1:ENST00000548421.2	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.22447	4.370255	4.51604	0.0161655	0.0137419	0.109464	0.0949306
chr16	69743687	69743785	6508665	0	-	0.418367	(0.408,0.44]	chr16	630197	7	INTRON	INTRON	NOB1	ENSG00000141101.13	ENST00000268802.10:ENST00000569871.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	28	2	4.22447	4.370255	4.51604	0.0161655	0.0137419	0.109464	0.0949306
chr21	41822817	41822917	7465983	0	-	0.44	(0.408,0.44]	chr21	760679	1	SS5_PROX	SS5_PROX:INTRON	PRDM15	ENSG00000141956.14	ENST00000422911.6:ENST00000441787.5:ENST00000449395.6:ENST00000398548.6:ENST00000447016.6:ENST00000269844.5:ENST00000491486.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	28	2	4.22447	4.370255	4.51604	0.0161655	0.0137419	0.109464	0.0949306
chr21	42869169	42869269	7467806	0	-	0.41	(0.408,0.44]	chr21	760973	52	INTRON	INTRON	WDR4	ENSG00000160193.12	ENST00000330317.6:ENST00000476326.5:ENST00000398208.3:ENST00000492742.5:ENST00000479429.5:ENST00000463902.5:ENST00000470658.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	28	2	4.22447	4.370255	4.51604	0.0161655	0.0137419	0.109464	0.0949306
chr4	25352353	25352447	1933764	0	+	0.414894	(0.408,0.44]	chr4	194148	4	EXON_LNCRNA	EXON_LNCRNA:INTRON	ZCCHC4	ENSG00000168228.16	ENST00000302874.9:ENST00000505451.5:ENST00000507760.5:ENST00000505412.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	28	2	4.22447	4.370255	4.51604	0.0161655	0.0137419	0.109464	0.0949306
chr7	45767575	45767672	3529425	0	-	0.412371	(0.408,0.44]	chr7	329290	14	INTRON	INTRON	SEPTIN7P2	ENSG00000214765.9	ENST00000338231.8:ENST00000688931.1:ENST00000429741.5:ENST00000689783.1:ENST00000693141.1:ENST00000684893.1:ENST00000690171.1:ENST00000428414.5:ENST00000686085.1:ENST00000686032.1:ENST00000691119.1:ENST00000688953.1:ENST00000690342.1:ENST00000690179.1:ENST00000413875.6:ENST00000689506.1:ENST00000691450.1:ENST00000687862.1:ENST00000686398.1:ENST00000450436.1	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript	0	28	2	4.22447	4.370255	4.51604	0.0161655	0.0137419	0.109464	0.0949306
chr1	13759462	13759562	31752	0	+	0.4	(0.378,0.408]	chr1	3859	11	INTRON	INTRON	PRDM2	ENSG00000116731.23	ENST00000311066.10:ENST00000376048.9:ENST00000235372.11:ENST00000491134.5:ENST00000502727.5:ENST00000502724.5:ENST00000413440.5:ENST00000343137.8:ENST00000491815.1:ENST00000503842.5:ENST00000505823.5:ENST00000407521.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	28	2	4.31699	4.37024	4.42349	0.0250408	0.00992961	0.12011	0.0877296
chr1	147157780	147157879	542212	0	-	0.383838	(0.378,0.408]	chr1	63573	28	UTR3	UTR3:EXON_MRNA	PRKAB2	ENSG00000131791.8	ENST00000254101.4	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.31699	4.37024	4.42349	0.0250408	0.00992961	0.12011	0.0877296
chr1	246197626	246197726	677611	0	-	0.4	(0.378,0.408]	chr1	79733	40	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000453676.5:ENST00000462422.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	28	2	4.31699	4.37024	4.42349	0.0250408	0.00992961	0.12011	0.0877296
chr11	61147651	61147751	4955596	0	-	0.39	(0.378,0.408]	chr11	465541	23	INTRON	INTRON	VPS37C	ENSG00000167987.11	ENST00000301765.10:ENST00000538036.1:ENST00000536000.1:ENST00000535818.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	28	2	4.31699	4.37024	4.42349	0.0250408	0.00992961	0.12011	0.0877296
chr11	73681117	73681217	4984983	0	-	0.38	(0.378,0.408]	chr11	470855	10	INTRON	INTRON	RAB6A	ENSG00000175582.20	ENST00000310653.10:ENST00000336083.8:ENST00000541973.5:ENST00000536566.5:ENST00000541588.5:ENST00000545625.5:ENST00000540771.5:ENST00000537446.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	28	2	4.31699	4.37024	4.42349	0.0250408	0.00992961	0.12011	0.0877296
chr14	73398057	73398157	5918700	0	-	0.39	(0.378,0.408]	chr14	562250	307	INTRON	INTRON	NUMB	ENSG00000133961.21	ENST00000554546.5:ENST00000555238.6:ENST00000557597.5:ENST00000356296.8:ENST00000555394.5:ENST00000555859.5:ENST00000554394.5:ENST00000555307.5:ENST00000554315.5:ENST00000555987.5:ENST00000556112.5:ENST00000557774.5:ENST00000554818.5:ENST00000557031.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	28	2	4.31699	4.37024	4.42349	0.0250408	0.00992961	0.12011	0.0877296
chr15	64508656	64508756	6044570	0	+	0.38	(0.378,0.408]	chr15	575696	57	INTRON	INTRON	ZNF609	ENSG00000180357.10	ENST00000326648.5:ENST00000558680.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	28	2	4.31699	4.37024	4.42349	0.0250408	0.00992961	0.12011	0.0877296
chr15	73616741	73616841	6221013	0	-	0.39	(0.378,0.408]	chr15	593920	168	INTRON	INTRON	NPTN	ENSG00000156642.17	ENST00000351217.10:ENST00000345330.9:ENST00000565325.5:ENST00000562924.5:ENST00000563691.5:ENST00000565282.5:ENST00000564551.1:ENST00000563753.1:ENST00000567198.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	28	2	4.31699	4.37024	4.42349	0.0250408	0.00992961	0.12011	0.0877296
chr19	41296060	41296157	7071374	0	+	0.402062	(0.378,0.408]	chr19	706780	10	INTRON	INTRON	HNRNPUL1	ENSG00000105323.18	ENST00000352456.7:ENST00000595018.5:ENST00000392006.8:ENST00000378215.8:ENST00000595196.5:ENST00000617774.1:ENST00000602130.5:ENST00000593587.5:ENST00000263367.7:ENST00000599614.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	28	2	4.31699	4.37024	4.42349	0.0250408	0.00992961	0.12011	0.0877296
chr7	64688169	64688268	3320099	0	+	0.40404	(0.378,0.408]	chr7	308672	14	INTRON	INTRON	ZNF107	ENSG00000196247.13	ENST00000395391.2:ENST00000684016.1:ENST00000620827.6:ENST00000423627.6:ENST00000613690.5:ENST00000344930.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	28	2	4.31699	4.37024	4.42349	0.0250408	0.00992961	0.12011	0.0877296
chr8	52660006	52660095	3950551	0	-	0.382022	(0.378,0.408]	chr8	362327	7	INTRON	INTRON	RB1CC1	ENSG00000023287.13	ENST00000025008.10:ENST00000435644.6:ENST00000521611.1:ENST00000523594.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	28	2	4.31699	4.37024	4.42349	0.0250408	0.00992961	0.12011	0.0877296
chr8	100300851	100300951	4004334	0	-	0.38	(0.378,0.408]	chr8	366474	2	SS3_PROX	SS3_PROX:INTRON	RNF19A	ENSG00000034677.13	ENST00000519449.5:ENST00000341084.7:ENST00000519527.5:ENST00000523167.1:ENST00000522369.5:ENST00000517584.5:ENST00000432381.2:ENST00000523481.5:ENST00000522182.1:ENST00000519342.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	28	2	4.31699	4.37024	4.42349	0.0250408	0.00992961	0.12011	0.0877296
chr9	95218429	95218529	4291042	0	-	0.4	(0.378,0.408]	chr9	394734	120	INTRON	INTRON	FANCC	ENSG00000158169.14	ENST00000289081.8:ENST00000375305.6:ENST00000649334.1:ENST00000490972.7:ENST00000649701.1:ENST00000696261.1:ENST00000636777.1:ENST00000474949.1:ENST00000647778.1:ENST00000433829.1:ENST00000647882.1:ENST00000649519.1:ENST00000650176.1:ENST00000648415.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	28	2	4.31699	4.37024	4.42349	0.0250408	0.00992961	0.12011	0.0877296
chr9	108958915	108959014	4310975	0	-	0.383838	(0.378,0.408]	chr9	396219	27	INTRON	INTRON	CTNNAL1	ENSG00000119326.15	ENST00000374595.8:ENST00000325551.9:ENST00000374594.1	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.31699	4.37024	4.42349	0.0250408	0.00992961	0.12011	0.0877296
chr17	37031889	37031989	6603352	0	+	0.49	(0.476,0.515]	chr17	642716	2	SS5_PROX	SS5_PROX:INTRON	AATF	ENSG00000275700.6	ENST00000680340.1:ENST00000680356.1:ENST00000616434.2:ENST00000680579.1:ENST00000681800.1:ENST00000680330.1:ENST00000619387.5:ENST00000679997.1:ENST00000681062.1:ENST00000679881.1:ENST00000680782.1:ENST00000679600.1:ENST00000616392.1:ENST00000617141.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	61	2	3.19975	4.3701799999999995	5.54061	0.00383299	1.30462e-4	0.0542786	0.00983066
chr19	4664475	4664575	7120974	0	-	0.48	(0.476,0.515]	chr19	716477	2	SS5_PROX	SS5_PROX:INTRON	MYDGF	ENSG00000074842.8	ENST00000599761.5:ENST00000262947.8:ENST00000599630.1:ENST00000596031.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	29	2	3.97201	4.37014	4.76827	0.030904	0.00600704	0.143385	0.0674604
chr2	235657506	235657605	1042972	0	+	0.484848	(0.476,0.515]	chr2	111222	1326	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1:ENST00000402604.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	29	2	3.97201	4.37014	4.76827	0.030904	0.00600704	0.143385	0.0674604
chr20	35776551	35776650	7262928	0	+	0.494949	(0.476,0.515]	chr20	738054	16	INTRON	INTRON	PHF20	ENSG00000025293.17	ENST00000461122.5:ENST00000461405.1:ENST00000374012.8:ENST00000452270.5:ENST00000374000.8:ENST00000339089.10:ENST00000481202.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	29	2	3.97201	4.37014	4.76827	0.030904	0.00600704	0.143385	0.0674604
chr3	141984273	141984373	1833781	0	-	0.5	(0.476,0.515]	chr3	184307	52	INTRON	INTRON	TFDP2	ENSG00000114126.18	ENST00000489671.6:ENST00000499676.5:ENST00000486111.5:ENST00000477292.5:ENST00000495310.5:ENST00000467072.5:ENST00000487734.5:ENST00000479040.5:ENST00000467667.5:ENST00000478006.5:ENST00000497579.5:ENST00000492919.1:ENST00000464782.5:ENST00000488107.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	29	2	3.97201	4.37014	4.76827	0.030904	0.00600704	0.143385	0.0674604
chr1	246468650	246468750	680336	0	-	0.33	(0.32,0.35]	chr1	79777	514	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000490107.6:ENST00000462422.5:ENST00000403792.7:ENST00000470863.1:ENST00000455277.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	29	2	4.36755	4.37012	4.37269	0.0300552	0.0154102	0.129138	0.108569
chr17	49655484	49655583	6793270	0	-	0.333333	(0.32,0.35]	chr17	670309	80	INTRON	INTRON	SPOP	ENSG00000121067.19	ENST00000393328.6:ENST00000504102.6:ENST00000347630.6:ENST00000665825.1:ENST00000514121.6:ENST00000659760.1:ENST00000509079.6:ENST00000671445.1:ENST00000513080.6:ENST00000505581.5:ENST00000506399.5:ENST00000507970.5:ENST00000515508.6:ENST00000504212.5:ENST00000508805.5:ENST00000451526.6:ENST00000502385.1:ENST00000509765.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	29	2	4.36755	4.37012	4.37269	0.0300552	0.0154102	0.129138	0.108569
chr2	30485281	30485380	727201	0	+	0.343434	(0.32,0.35]	chr2	83978	83	INTRON	INTRON	LCLAT1	ENSG00000172954.14	ENST00000466477.5:ENST00000465200.5:ENST00000319406.8:ENST00000379509.8:ENST00000491680.6:ENST00000488144.5:ENST00000465538.5:ENST00000309052.8:ENST00000478015.5:ENST00000476038.5:ENST00000497423.1:ENST00000476535.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	29	2	4.36755	4.37012	4.37269	0.0300552	0.0154102	0.129138	0.108569
chr20	460639	460739	7303214	0	-	0.34	(0.32,0.35]	chr20	743474	94	INTRON	INTRON	TBC1D20	ENSG00000125875.15	ENST00000680792.1:ENST00000354200.5:ENST00000461304.5:ENST00000681539.1:ENST00000679741.1:ENST00000680990.1:ENST00000681129.1:ENST00000681414.1:ENST00000681441.1:ENST00000680284.1:ENST00000681777.1:ENST00000681389.1:ENST00000679895.1:ENST00000680491.1:ENST00000679451.1:ENST00000679953.1:ENST00000461188.6:ENST00000680521.1:ENST00000681551.1:ENST00000679973.1:ENST00000680911.1:ENST00000679944.1:ENST00000681636.1:ENST00000680106.1:ENST00000494633.1:ENST00000680050.1:ENST00000681742.1:ENST00000680515.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	29	2	4.36755	4.37012	4.37269	0.0300552	0.0154102	0.129138	0.108569
chr3	9793979	9794078	1360926	0	+	0.343434	(0.32,0.35]	chr3	143087	4	INTRON	INTRON	ARPC4:ARPC4-TTLL3	ENSG00000241553.13:ENSG00000250151.9	ENST00000498623.6:ENST00000424442.5:ENST00000418163.5:ENST00000397261.8:ENST00000417500.5:ENST00000479956.1:ENST00000440787.5:ENST00000467289.5:ENST00000485273.1:ENST00000397256.5:ENST00000433034.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	29	2	4.36755	4.37012	4.37269	0.0300552	0.0154102	0.129138	0.108569
chr3	56570268	56570363	1434443	0	+	0.336842	(0.32,0.35]	chr3	151433	11	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	CCDC66	ENSG00000180376.17	ENST00000422222.5:ENST00000394672.8:ENST00000326595.11:ENST00000434467.5:ENST00000471681.5:ENST00000341455.10:ENST00000442522.6:ENST00000484623.5:ENST00000482673.5:ENST00000494672.1:ENST00000484441.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	29	2	4.36755	4.37012	4.37269	0.0300552	0.0154102	0.129138	0.108569
chr6	85557175	85557275	3150557	0	-	0.34	(0.32,0.35]	chr6	293782	69	INTRON	INTRON	ENSG00000271793:SNX14	ENSG00000271793.2:ENSG00000135317.14	ENST00000682083.1:ENST00000683074.1:ENST00000681965.1:ENST00000682171.1:ENST00000684150.1:ENST00000683785.1:ENST00000682497.1:ENST00000684647.1:ENST00000683643.1:ENST00000682023.1:ENST00000682022.1:ENST00000683542.1:ENST00000683126.1:ENST00000683857.1:ENST00000683898.1:ENST00000682854.1:ENST00000682491.1:ENST00000682174.1:ENST00000684239.1:ENST00000682939.1:ENST00000684570.1:ENST00000682057.1:ENST00000682878.1:ENST00000683880.1:ENST00000684422.1:ENST00000682504.1:ENST00000683726.1:ENST00000684680.1:ENST00000683196.1:ENST00000683458.1:ENST00000683803.1:ENST00000684281.1:ENST00000682991.1:ENST00000683754.1:ENST00000683481.1:ENST00000682455.1:ENST00000682034.1:ENST00000684451.1:ENST00000683583.1:ENST00000682776.1:ENST00000683873.1:ENST00000683878.1:ENST00000683195.1:ENST00000682995.1:ENST00000682374.1:ENST00000683698.1:ENST00000682454.1:ENST00000682694.1:ENST00000682412.1:ENST00000682682.1:ENST00000346348.7:ENST00000314673.8:ENST00000682633.1:ENST00000683085.1:ENST00000682688.1:ENST00000684319.1:ENST00000683577.1:ENST00000682709.1:ENST00000684299.1:ENST00000682133.1:ENST00000682594.1:ENST00000683473.1:ENST00000682106.1:ENST00000683364.1:ENST00000683436.1:ENST00000684220.1:ENST00000683909.1:ENST00000684118.1:ENST00000681981.1:ENST00000682738.1:ENST00000509338.6:ENST00000684717.1:ENST00000682660.1:ENST00000683073.1:ENST00000515216.6:ENST00000684581.1:ENST00000683479.1:ENST00000682464.1:ENST00000684108.1:ENST00000682514.1:ENST00000684017.1:ENST00000684273.1:ENST00000513865.5:ENST00000505648.5:ENST00000508980.5:ENST00000369627.6:ENST00000503491.5:ENST00000508658.6:ENST00000683097.1:ENST00000683541.1:ENST00000683759.1:ENST00000369635.7:ENST00000684462.1:ENST00000682168.1:ENST00000513869.2:ENST00000514419.6:ENST00000683999.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	29	2	4.36755	4.37012	4.37269	0.0300552	0.0154102	0.129138	0.108569
chr7	43868207	43868301	3526400	0	-	0.340426	(0.32,0.35]	chr7	328797	8	EXON_MRNA	EXON_MRNA:INTRON	MRPS24	ENSG00000062582.14	ENST00000317534.6:ENST00000418740.5:ENST00000483330.1:ENST00000467084.1:ENST00000414932.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	29	2	4.36755	4.37012	4.37269	0.0300552	0.0154102	0.129138	0.108569
chr7	91944240	91944339	3351047	0	+	0.333333	(0.32,0.35]	chr7	312180	27	INTRON	INTRON	AKAP9	ENSG00000127914.19	ENST00000680534.1:ENST00000680513.1:ENST00000680072.1:ENST00000679821.1:ENST00000679554.1:ENST00000356239.8:ENST00000679521.1:ENST00000680181.1:ENST00000681722.1:ENST00000680766.1:ENST00000679448.1:ENST00000681412.1:ENST00000680047.1:ENST00000679474.1:ENST00000680952.1:ENST00000679457.1:ENST00000679722.1:ENST00000680074.1:ENST00000493453.1:ENST00000394564.5:ENST00000674381.2:ENST00000359028.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	29	2	4.36755	4.37012	4.37269	0.0300552	0.0154102	0.129138	0.108569
chr8	99152601	99152700	3812669	0	+	0.343434	(0.32,0.35]	chr8	353152	14	INTRON	INTRON	VPS13B	ENSG00000132549.20	ENST00000496144.5:ENST00000683334.1:ENST00000682853.1:ENST00000357162.7:ENST00000358544.7:ENST00000683619.1:ENST00000683869.1:ENST00000682153.1:ENST00000682358.1:ENST00000682145.1:ENST00000355155.6:ENST00000682234.1:ENST00000683486.1:ENST00000684308.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	29	2	4.36755	4.37012	4.37269	0.0300552	0.0154102	0.129138	0.108569
chr8	116714723	116714823	4033816	0	-	0.35	(0.32,0.35]	chr8	368058	171	INTRON	INTRON	EIF3H	ENSG00000147677.12	ENST00000521861.6:ENST00000276682.8:ENST00000518949.5:ENST00000518995.5:ENST00000522800.5:ENST00000518034.5:ENST00000517974.1:ENST00000522453.1:ENST00000519046.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	29	2	4.36755	4.37012	4.37269	0.0300552	0.0154102	0.129138	0.108569
chr1	155519124	155519224	562455	0	-	0.53	(0.515,0.57]	chr1	67101	363	INTRON	INTRON	ASH1L	ENSG00000116539.14	ENST00000676814.1:ENST00000392403.8:ENST00000368346.7:ENST00000677213.1:ENST00000678117.1:ENST00000679097.1:ENST00000679333.1:ENST00000677042.1:ENST00000678699.1:ENST00000677825.1:ENST00000679133.1:ENST00000548830.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	54	2	3.76294	4.37008	4.97722	0.00168681	2.08636e-4	0.0370386	0.0125926
chr11	125595116	125595204	4882640	0	+	0.340909	(0.32,0.35]	chr11	456434	1	SS5_PROX	SS5_PROX:INTRON	STT3A	ENSG00000134910.14	ENST00000527606.5:ENST00000534472.5:ENST00000529196.5:ENST00000392708.9:ENST00000649491.1:ENST00000531491.5:ENST00000525652.5:ENST00000529886.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	30	2	3.94529	4.370055	4.79482	0.0693433	0.00447781	0.184298	0.0610799
chr13	48086081	48086181	5590666	0	-	0.35	(0.32,0.35]	chr13	534274	4	SS5_PROX	SS5_PROX:INTRON	MED4	ENSG00000136146.15	ENST00000258648.7:ENST00000378586.5:ENST00000417167.2	protein_coding	protein_coding	protein_coding	protein_coding	0	30	2	3.94529	4.370055	4.79482	0.0693433	0.00447781	0.184298	0.0610799
chr18	42026386	42026482	6898176	0	+	0.34375	(0.32,0.35]	chr18	683443	12	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	PIK3C3	ENSG00000078142.14	ENST00000262039.9:ENST00000398870.7:ENST00000593098.5:ENST00000590013.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	30	2	3.94529	4.370055	4.79482	0.0693433	0.00447781	0.184298	0.0610799
chr3	12643682	12643781	1617227	0	-	0.343434	(0.32,0.35]	chr3	166990	141	INTRON	INTRON	RAF1	ENSG00000132155.14	ENST00000688543.1:ENST00000685348.1:ENST00000251849.9:ENST00000442415.7:ENST00000688444.1:ENST00000692093.1:ENST00000691724.1:ENST00000423275.6:ENST00000687326.1:ENST00000688803.1:ENST00000689876.1:ENST00000686455.1:ENST00000684903.1:ENST00000693312.1:ENST00000690460.1:ENST00000692773.1:ENST00000688625.1:ENST00000693664.1:ENST00000686762.1:ENST00000692311.1:ENST00000692558.1:ENST00000691779.1:ENST00000685738.1:ENST00000690397.1:ENST00000687923.1:ENST00000688269.1:ENST00000693705.1:ENST00000689097.1:ENST00000691899.1:ENST00000689914.1:ENST00000690625.1:ENST00000689389.1:ENST00000687257.1:ENST00000686409.1:ENST00000685653.1:ENST00000689540.1:ENST00000691396.1:ENST00000685437.1:ENST00000689418.1:ENST00000687940.1:ENST00000689481.1:ENST00000491290.2:ENST00000686479.1:ENST00000689033.1:ENST00000692777.1:ENST00000689226.1:ENST00000691718.1:ENST00000692959.1:ENST00000685740.1:ENST00000688753.1:ENST00000688779.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	30	2	3.94529	4.370055	4.79482	0.0693433	0.00447781	0.184298	0.0610799
chr6	149637785	149637885	3246013	0	-	0.33	(0.32,0.35]	chr6	301594	45	INTRON	INTRON	KATNA1	ENSG00000186625.14	ENST00000335643.12:ENST00000367411.7:ENST00000335647.9:ENST00000470620.1:ENST00000444282.5:ENST00000420200.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	30	2	3.94529	4.370055	4.79482	0.0693433	0.00447781	0.184298	0.0610799
chr6	161112167	161112264	3025736	0	+	0.329897	(0.32,0.35]	chr6	282458	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MAP3K4	ENSG00000085511.20	ENST00000366919.6:ENST00000392142.9:ENST00000366920.6:ENST00000348824.11:ENST00000544041.5:ENST00000490904.6:ENST00000536852.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	30	2	3.94529	4.370055	4.79482	0.0693433	0.00447781	0.184298	0.0610799
chr22	26583769	26583869	7565005	0	-	0.44	(0.408,0.44]	chr22	774054	182	INTRON	INTRON	TPST2	ENSG00000128294.16	ENST00000338754.9:ENST00000403880.5:ENST00000442495.5:ENST00000440953.5:ENST00000450022.1	protein_coding	protein_coding	protein_coding	protein_coding	1	62	2	3.28852	4.370025	5.45153	0.00287185	1.89064e-4	0.0474836	0.0119565
chr20	32771040	32771140	7256735	0	+	0.31	(0.28,0.32]	chr20	737113	78	INTRON	INTRON	DNMT3B	ENSG00000088305.19	ENST00000696232.1:ENST00000328111.6:ENST00000696231.1:ENST00000348286.6:ENST00000353855.6:ENST00000696233.1:ENST00000443239.7:ENST00000696234.1:ENST00000696235.1:ENST00000456297.6:ENST00000696236.1:ENST00000696237.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	66	2	3.39204	4.369845	5.34765	0.00287138	0.00188405	0.0474836	0.0402736
chr3	108047492	108047592	1768842	0	-	0.36	(0.35,0.378]	chr3	178904	2	SS3_PROX	SS3_PROX:INTRON	CD47	ENSG00000196776.17	ENST00000361309.6:ENST00000355354.13:ENST00000471694.1:ENST00000517766.5:ENST00000398258.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	66	2	2.94111	4.369595	5.79808	0.0104563	5.23926e-5	0.0855102	0.00590498
chr17	41983830	41983927	6770518	0	-	0.453608	(0.44,0.476]	chr17	666611	3	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	DNAJC7	ENSG00000168259.17	ENST00000316603.12:ENST00000457167.9:ENST00000586335.2:ENST00000674306.1:ENST00000426588.7:ENST00000674355.1:ENST00000674504.1:ENST00000590197.2:ENST00000674472.1:ENST00000674233.1:ENST00000674166.1:ENST00000674179.1:ENST00000674481.1:ENST00000674249.1:ENST00000585866.6:ENST00000589576.6:ENST00000674214.1:ENST00000588814.5:ENST00000590774.6:ENST00000674303.1:ENST00000674453.1:ENST00000674252.1:ENST00000674287.1:ENST00000674497.1:ENST00000674411.1:ENST00000585693.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	58	2	3.59417	4.368975	5.14378	0.00184943	5.78231e-4	0.0388609	0.0218253
chr7	87011050	87011150	3564945	0	-	0.49	(0.476,0.515]	chr7	332199	452	INTRON	INTRON	ELAPOR2	ENSG00000164659.15	ENST00000450689.7:ENST00000444627.5:ENST00000423294.5	protein_coding	protein_coding	protein_coding	protein_coding	0	30	2	3.83018	4.368895	4.90761	0.0423385	0.00386428	0.161744	0.0542786
chr3	182888809	182888909	1578852	0	+	0.4	(0.378,0.408]	chr3	162830	7	INTRON	INTRON	ATP11B	ENSG00000058063.16	ENST00000323116.10:ENST00000498086.5:ENST00000490303.5:ENST00000466758.5:ENST00000482070.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	64	2	2.95459	4.368885	5.78318	0.00957623	4.21479e-5	0.0820838	0.0052571
chr1	77699113	77699210	493508	0	-	0.340206	(0.32,0.35]	chr1	58337	8	INTRON	INTRON	USP33	ENSG00000077254.14	ENST00000370794.7:ENST00000370793.5:ENST00000357428.5:ENST00000481579.5:ENST00000533928.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	30	2	4.04364	4.36872	4.6938	0.034181	0.0137794	0.146815	0.0949306
chr1	246206425	246206525	677699	0	-	0.33	(0.32,0.35]	chr1	79733	128	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000453676.5:ENST00000462422.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	30	2	4.04364	4.36872	4.6938	0.034181	0.0137794	0.146815	0.0949306
chr21	45105847	45105947	7418165	0	+	0.34	(0.32,0.35]	chr21	756262	307	INTRON	INTRON	ADARB1	ENSG00000197381.17	ENST00000462214.5:ENST00000460734.5:ENST00000348831.9:ENST00000389861.7:ENST00000389863.8:ENST00000492414.5:ENST00000496664.5:ENST00000437626.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	30	2	4.04364	4.36872	4.6938	0.034181	0.0137794	0.146815	0.0949306
chr6	161016011	161016111	3024733	0	+	0.33	(0.32,0.35]	chr6	282304	236	INTRON	INTRON	MAP3K4	ENSG00000085511.20	ENST00000366919.6:ENST00000392142.9:ENST00000542952.5:ENST00000366920.6:ENST00000348824.11:ENST00000544041.5:ENST00000490904.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	30	2	4.04364	4.36872	4.6938	0.034181	0.0137794	0.146815	0.0949306
chr7	5993448	5993547	3475687	0	-	0.333333	(0.32,0.35]	chr7	325104	10	INTRON	INTRON	PMS2	ENSG00000122512.16	ENST00000265849.12:ENST00000441476.6:ENST00000642292.1:ENST00000642456.1:ENST00000643595.1:ENST00000382321.5:ENST00000644110.1:ENST00000406569.7:ENST00000469652.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	30	2	4.04364	4.36872	4.6938	0.034181	0.0137794	0.146815	0.0949306
chr16	16635884	16635984	6312223	0	+	0.5	(0.476,0.515]	chr16	604106	20	INTRON	INTRON	ENSG00000260126	ENSG00000260126.2	ENST00000567465.2	lncRNA	lncRNA	lncRNA	lncRNA	1	61	2	3.29074	4.368635	5.44653	0.00272563	2.03754e-4	0.0467523	0.0124395
chr10	32940324	32940424	4592528	0	-	0.25	[0,0.28]	chr10	423511	12	INTRON	INTRON	ITGB1	ENSG00000150093.20	ENST00000609742.3:ENST00000678989.1:ENST00000677363.1:ENST00000302278.8:ENST00000396033.6:ENST00000417122.7:ENST00000676895.1:ENST00000678120.1:ENST00000676623.1:ENST00000678952.1:ENST00000677999.1:ENST00000679187.1:ENST00000678479.1:ENST00000676964.1:ENST00000488494.6:ENST00000488427.2:ENST00000678591.1:ENST00000678943.1:ENST00000437302.6:ENST00000678701.1:ENST00000678766.1:ENST00000676659.1:ENST00000677310.1:ENST00000474568.6:ENST00000676460.1:ENST00000475184.6:ENST00000484088.5:ENST00000480226.5:ENST00000534049.5:ENST00000528877.5:ENST00000414670.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	71	2	3.2621000000000002	4.36862	5.47514	0.00367113	0.00354561	0.056059199999999997	0.0529186
chr17	31992642	31992741	6596242	0	+	0.585859	(0.57,1]	chr17	641589	38	INTRON	INTRON	SUZ12	ENSG00000178691.11	ENST00000322652.10:ENST00000580398.1	protein_coding	protein_coding	protein_coding	protein_coding	3	60	2	3.01121	4.368600000000001	5.72599	1.18338e-4	3.45794e-6	0.00930884	0.00131943
chr21	39301773	39301873	7465424	0	-	0.33	(0.32,0.35]	chr21	760568	28	INTRON	INTRON	BRWD1	ENSG00000185658.14	ENST00000333229.6:ENST00000342449.8:ENST00000380800.7:ENST00000341322.4:ENST00000470108.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	85	2	3.14789	4.3685599999999996	5.58923	8.12357e-4	5.00642e-4	0.0263656	0.020217099999999998
chr17	75135906	75136001	6835892	0	-	0.4	(0.378,0.408]	chr17	675451	8	UTR3	UTR3:EXON_MRNA	JPT1	ENSG00000189159.16	ENST00000409753.8:ENST00000476258.5:ENST00000482348.5:ENST00000304834.11:ENST00000356033.8:ENST00000470924.5:ENST00000481094.1:ENST00000481647.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	94	2	2.81806	4.368455	5.91885	5.36236e-4	1.02858e-4	0.0209287	0.00915589
chr15	83007949	83008049	6248878	0	-	0.52	(0.515,0.57]	chr15	596346	2	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	C15orf40	ENSG00000169609.14	ENST00000514272.2:ENST00000538348.6:ENST00000510873.6:ENST00000512638.5:ENST00000451195.7:ENST00000304177.10:ENST00000508990.2:ENST00000563387.5:ENST00000565712.1:ENST00000505341.1:ENST00000506912.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	28	2	3.89856	4.3681	4.83764	0.0280943	0.00279527	0.137011	0.0469265
chr4	67537456	67537555	2153434	0	-	0.515152	(0.476,0.515]	chr4	211997	62	INTRON	INTRON	CENPC	ENSG00000145241.11	ENST00000273853.11:ENST00000506882.5:ENST00000510189.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	82	2	2.69886	4.3677600000000005	6.03666	0.00385209	9.45316e-6	0.0542786	0.00222322
chr3	33851387	33851487	1394936	0	+	0.33	(0.32,0.35]	chr3	146115	54	INTRON	INTRON	PDCD6IP	ENSG00000170248.15	ENST00000457054.6:ENST00000648706.1:ENST00000307296.8:ENST00000465122.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	84	2	2.89475	4.3677150000000005	5.84068	0.00160352	3.015e-4	0.0367961	0.0160895
chr11	61354460	61354553	4956683	0	-	0.451613	(0.44,0.476]	chr11	465813	6	UTR5	UTR5:EXON_MRNA:SS3_PROX:INTRON	CYB561A3	ENSG00000162144.10	ENST00000426130.6:ENST00000294072.9:ENST00000540317.5:ENST00000447532.6:ENST00000546151.5:ENST00000540755.5:ENST00000544118.5:ENST00000536915.5:ENST00000539890.1:ENST00000540139.5:ENST00000542361.5:ENST00000537364.5:ENST00000535177.1:ENST00000539128.5:ENST00000538263.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	30	2	3.8344	4.3672	4.9	0.041276	0.00423315	0.161534	0.0572185
chr12	104697764	104697864	5213096	0	+	0.46	(0.44,0.476]	chr12	493329	954	INTRON	INTRON	CHST11	ENSG00000171310.11	ENST00000303694.6:ENST00000549260.5:ENST00000549016.1	protein_coding	protein_coding	protein_coding	protein_coding	0	30	2	3.8344	4.3672	4.9	0.041276	0.00423315	0.161534	0.0572185
chr19	1809142	1809242	7113428	0	-	0.5	(0.476,0.515]	chr19	714790	1	SS5_PROX	SS5_PROX:INTRON	ATP8B3	ENSG00000130270.16	ENST00000310127.10:ENST00000531925.5:ENST00000525591.5:ENST00000526092.6:ENST00000533993.5:ENST00000587160.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	202	2	3.67606	4.36716	5.05826	5.83253e-6	8.0874e-8	0.00180272	1.23205e-4
chr10	822905	823003	4541477	0	-	0.459184	(0.44,0.476]	chr10	419220	17	INTRON	INTRON	LARP4B	ENSG00000107929.16	ENST00000688365.1:ENST00000316157.8:ENST00000690516.1:ENST00000689323.1:ENST00000688042.1:ENST00000690211.1:ENST00000448368.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	93	2	2.96367	4.36714	5.77061	2.39417e-4	1.44264e-4	0.0136403	0.0109794
chr11	47219344	47219444	4787786	0	+	0.4	(0.378,0.408]	chr11	442861	19	INTRON	INTRON	DDB2	ENSG00000134574.12	ENST00000614825.4:ENST00000256996.9:ENST00000378601.7:ENST00000622090.4:ENST00000610805.4:ENST00000612309.4:ENST00000617022.4:ENST00000616278.4:ENST00000378600.7:ENST00000378603.7:ENST00000617847.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	28	2	4.21563	4.367084999999999	4.51854	0.0315429	0.00748824	0.13151	0.0772645
chr12	112036500	112036600	5414672	0	-	0.4	(0.378,0.408]	chr12	517121	12	INTRON	INTRON	NAA25	ENSG00000111300.10	ENST00000261745.9:ENST00000552527.5:ENST00000549711.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	28	2	4.21563	4.367084999999999	4.51854	0.0315429	0.00748824	0.13151	0.0772645
chr14	52543457	52543557	5894401	0	-	0.38	(0.378,0.408]	chr14	559753	1	CDS_START	CDS_START:CDS:EXON_MRNA:INTRON	TXNDC16	ENSG00000087301.9	ENST00000281741.9:ENST00000554399.1:ENST00000557374.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	28	2	4.21563	4.367084999999999	4.51854	0.0315429	0.00748824	0.13151	0.0772645
chr17	8511480	8511574	6720816	0	-	0.404255	(0.378,0.408]	chr17	659547	12	INTRON	INTRON	MYH10	ENSG00000133026.14	ENST00000379980.8:ENST00000269243.8:ENST00000688902.1:ENST00000684843.1:ENST00000687178.1:ENST00000692526.1:ENST00000688497.1:ENST00000685418.1:ENST00000693441.1:ENST00000686654.1:ENST00000360416.8:ENST00000691566.1:ENST00000686521.1:ENST00000692077.1:ENST00000686956.1:ENST00000465458.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	28	2	4.21563	4.367084999999999	4.51854	0.0315429	0.00748824	0.13151	0.0772645
chr2	32411008	32411107	731325	0	+	0.393939	(0.378,0.408]	chr2	84319	41	INTRON	INTRON	BIRC6	ENSG00000115760.15	ENST00000421745.7:ENST00000648282.1	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.21563	4.367084999999999	4.51854	0.0315429	0.00748824	0.13151	0.0772645
chr2	241678649	241678749	1349354	0	-	0.39	(0.378,0.408]	chr2	141791	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	DTYMK	ENSG00000168393.13	ENST00000400770.6:ENST00000305784.7:ENST00000445261.5:ENST00000432348.5:ENST00000420144.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	28	2	4.21563	4.367084999999999	4.51854	0.0315429	0.00748824	0.13151	0.0772645
chr20	2954509	2954609	7223375	0	+	0.39	(0.378,0.408]	chr20	733957	61	INTRON	INTRON	PTPRA	ENSG00000132670.21	ENST00000455631.5:ENST00000399903.7:ENST00000216877.10:ENST00000431048.5:ENST00000318266.9:ENST00000430705.5:ENST00000356147.3	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.21563	4.367084999999999	4.51854	0.0315429	0.00748824	0.13151	0.0772645
chr22	28690595	28690693	7572968	0	-	0.397959	(0.378,0.408]	chr22	774309	10	INTRON	INTRON	CHEK2	ENSG00000183765.23	ENST00000416671.5:ENST00000348295.7:ENST00000404276.6:ENST00000425190.7:ENST00000402731.6:ENST00000464581.6:ENST00000456369.5:ENST00000434810.5:ENST00000648295.1:ENST00000649563.1:ENST00000405598.5:ENST00000382580.6:ENST00000650281.1:ENST00000417588.5:ENST00000433728.5:ENST00000448511.5:ENST00000403642.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	28	2	4.21563	4.367084999999999	4.51854	0.0315429	0.00748824	0.13151	0.0772645
chr4	126673872	126673971	2237448	0	-	0.393939	(0.378,0.408]	chr4	219023	2084	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	0	28	2	4.21563	4.367084999999999	4.51854	0.0315429	0.00748824	0.13151	0.0772645
chr8	23022377	23022474	3923466	0	-	0.381443	(0.378,0.408]	chr8	359060	24	UTR3	UTR3:EXON_MRNA	TNFRSF10B	ENSG00000120889.13	ENST00000276431.9:ENST00000523752.5:ENST00000347739.3:ENST00000523504.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	28	2	4.21563	4.367084999999999	4.51854	0.0315429	0.00748824	0.13151	0.0772645
chr8	65679002	65679102	3773781	0	+	0.39	(0.378,0.408]	chr8	349964	86	INTRON	INTRON	MTFR1	ENSG00000066855.16	ENST00000262146.9:ENST00000522239.5:ENST00000523222.5:ENST00000523170.5:ENST00000424808.6:ENST00000517944.5:ENST00000458689.2:ENST00000518800.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	28	2	4.21563	4.367084999999999	4.51854	0.0315429	0.00748824	0.13151	0.0772645
chr10	50542299	50542399	4619873	0	-	0.26	[0,0.28]	chr10	425452	220	INTRON	INTRON	SGMS1	ENSG00000198964.14	ENST00000429490.5:ENST00000361781.7:ENST00000619438.4:ENST00000609445.5:ENST00000608287.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	31	2	4.1879	4.367	4.5461	0.0396579	0.0365918	0.161534	0.138959
chr11	93712159	93712259	4848297	0	+	0.25	[0,0.28]	chr11	452162	49	INTRON	INTRON	CEP295	ENSG00000166004.15	ENST00000325212.11:ENST00000531700.5:ENST00000530425.1	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.1879	4.367	4.5461	0.0396579	0.0365918	0.161534	0.138959
chr15	89876705	89876805	6257668	0	-	0.28	[0,0.28]	chr15	597081	48	INTRON	INTRON	AP3S2:ARPIN-AP3S2	ENSG00000157823.17:ENSG00000250021.7	ENST00000336418.9:ENST00000398333.7:ENST00000423566.6:ENST00000558011.5:ENST00000560940.5:ENST00000557999.5:ENST00000558806.5:ENST00000559162.5:ENST00000558999.5:ENST00000559629.1:ENST00000558648.5:ENST00000560184.5:ENST00000560224.1:ENST00000560251.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	31	2	4.1879	4.367	4.5461	0.0396579	0.0365918	0.161534	0.138959
chr2	135606875	135606975	874713	0	+	0.27	[0,0.28]	chr2	97911	3	INTRON	INTRON	R3HDM1	ENSG00000048991.17	ENST00000683871.1:ENST00000409478.5:ENST00000264160.8:ENST00000488035.5:ENST00000410054.5:ENST00000628915.2:ENST00000436436.5:ENST00000409606.5:ENST00000456040.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	31	2	4.1879	4.367	4.5461	0.0396579	0.0365918	0.161534	0.138959
chr5	171962583	171962683	2772299	0	-	0.28	[0,0.28]	chr5	260953	45	INTRON	INTRON	FBXW11	ENSG00000072803.18	ENST00000296933.10:ENST00000517395.6:ENST00000265094.9:ENST00000393802.6:ENST00000523843.5:ENST00000519693.5:ENST00000520376.1:ENST00000518752.1:ENST00000522507.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	31	2	4.1879	4.367	4.5461	0.0396579	0.0365918	0.161534	0.138959
chr6	87237705	87237804	2914088	0	+	0.252525	[0,0.28]	chr6	275317	38	INTRON	INTRON	ZNF292	ENSG00000188994.13	ENST00000369577.8:ENST00000518845.1:ENST00000339907.8:ENST00000496806.2:ENST00000466062.2	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.1879	4.367	4.5461	0.0396579	0.0365918	0.161534	0.138959
chr7	22663916	22664016	3500017	0	-	0.37	(0.35,0.378]	chr7	326677	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	STEAP1B	ENSG00000105889.16	ENST00000650428.1:ENST00000649402.1:ENST00000414116.1	protein_coding	processed_transcript	protein_coding	processed_transcript	0	30	2	3.94291	4.36685	4.79079	0.0374229	0.00846427	0.155878	0.0776969
chr17	67908785	67908884	6668549	0	+	0.363636	(0.35,0.378]	chr17	650600	36	INTRON	INTRON	BPTF	ENSG00000171634.19	ENST00000306378.11:ENST00000544778.6:ENST00000321892.8:ENST00000342579.8:ENST00000644067.1:ENST00000424123.7	protein_coding	protein_coding	protein_coding	protein_coding	4	114	2	2.86669	4.366835	5.86698	1.76496e-4	1.61757e-4	0.01216	0.0109774
chr12	101745791	101745889	5398101	0	-	0.479592	(0.476,0.515]	chr12	514863	4	UTR3	UTR3:EXON_MRNA	GNPTAB	ENSG00000111670.16	ENST00000299314.12	protein_coding	protein_coding	protein_coding	protein_coding	1	62	2	3.49587	4.36678	5.23769	0.00120011	5.17244e-4	0.0315806	0.0203753
chr1	54044564	54044658	461504	0	-	0.404255	(0.378,0.408]	chr1	55600	12	UTR5	UTR5:EXON_MRNA:INTRON	TMEM59	ENSG00000116209.12	ENST00000234831.10:ENST00000371348.5:ENST00000371344.5:ENST00000371341.5:ENST00000440019.5:ENST00000420738.5:ENST00000452421.5	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.32174	4.366715	4.41169	0.0199606	0.0132362	0.109608	0.0999551
chr1	173901655	173901754	257083	0	+	0.40404	(0.378,0.408]	chr1	30716	157	UTR3	UTR3:EXON_MRNA	ZBTB37	ENSG00000185278.16	ENST00000367701.10	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.32174	4.366715	4.41169	0.0199606	0.0132362	0.109608	0.0999551
chr11	32605173	32605272	4764698	0	+	0.393939	(0.378,0.408]	chr11	440603	29	UTR3	UTR3:EXON_MRNA	EIF3M	ENSG00000149100.13	ENST00000531120.6	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.32174	4.366715	4.41169	0.0199606	0.0132362	0.109608	0.0999551
chr13	19759818	19759918	5552713	0	-	0.4	(0.378,0.408]	chr13	530721	4	SS3_PROX	SS3_PROX:INTRON	PSPC1	ENSG00000121390.19	ENST00000471658.5:ENST00000492741.5:ENST00000338910.9:ENST00000619300.4:ENST00000427943.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	28	2	4.32174	4.366715	4.41169	0.0199606	0.0132362	0.109608	0.0999551
chr15	41284388	41284472	6004383	0	+	0.404762	(0.378,0.408]	chr15	571241	1	SS5_PROX	SS5_PROX:INTRON	OIP5-AS1	ENSG00000247556.6	ENST00000558945.5:ENST00000558457.5:ENST00000500949.6:ENST00000561275.5:ENST00000560706.5:ENST00000559368.5:ENST00000560545.1:ENST00000561226.5:ENST00000557993.5:ENST00000501665.2	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	0	28	2	4.32174	4.366715	4.41169	0.0199606	0.0132362	0.109608	0.0999551
chr15	89609746	89609846	6097457	0	+	0.38	(0.378,0.408]	chr15	580351	4	INTRON	INTRON	TICRR	ENSG00000140534.14	ENST00000268138.12:ENST00000560985.5	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.32174	4.366715	4.41169	0.0199606	0.0132362	0.109608	0.0999551
chr17	77325110	77325210	6679885	0	+	0.38	(0.378,0.408]	chr17	652501	9	INTRON	INTRON	SEPTIN9	ENSG00000184640.20	ENST00000589070.1:ENST00000591833.5:ENST00000591198.5:ENST00000427177.6:ENST00000590576.5:ENST00000431235.6:ENST00000449803.6:ENST00000587237.1:ENST00000329047.13:ENST00000588575.1:ENST00000590595.1:ENST00000590294.6:ENST00000591934.1:ENST00000588690.6:ENST00000592098.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	28	2	4.32174	4.366715	4.41169	0.0199606	0.0132362	0.109608	0.0999551
chr2	26126643	26126743	714028	0	+	0.4	(0.378,0.408]	chr2	82454	1	SS3_PROX	SS3_PROX:INTRON	RAB10	ENSG00000084733.11	ENST00000264710.5:ENST00000495146.5:ENST00000473035.1:ENST00000462003.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	28	2	4.32174	4.366715	4.41169	0.0199606	0.0132362	0.109608	0.0999551
chr2	38848268	38848335	1100412	0	-	0.38806	(0.378,0.408]	chr2	118105	1	CDS	CDS:UTR3:EXON_MRNA	DHX57	ENSG00000163214.21	ENST00000457308.6:ENST00000452978.5:ENST00000622155.4:ENST00000620517.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	28	2	4.32174	4.366715	4.41169	0.0199606	0.0132362	0.109608	0.0999551
chr4	26337242	26337342	1936835	0	+	0.38	(0.378,0.408]	chr4	194354	139	INTRON	INTRON	RBPJ	ENSG00000168214.22	ENST00000512351.5:ENST00000681799.1:ENST00000681403.1:ENST00000342295.6:ENST00000512671.6:ENST00000506956.5:ENST00000345843.8:ENST00000361572.10:ENST00000514380.5:ENST00000514807.5:ENST00000348160.9:ENST00000681506.1:ENST00000509158.6:ENST00000691085.1:ENST00000692303.1:ENST00000681856.1:ENST00000513182.5:ENST00000681025.1:ENST00000681679.1:ENST00000680210.1:ENST00000355476.8:ENST00000680140.1:ENST00000511401.5:ENST00000680511.1:ENST00000510778.7:ENST00000679698.1:ENST00000679469.1:ENST00000681484.1:ENST00000505958.6:ENST00000507561.5:ENST00000514730.5:ENST00000507574.5:ENST00000514675.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	28	2	4.32174	4.366715	4.41169	0.0199606	0.0132362	0.109608	0.0999551
chr4	139026533	139026633	2049491	0	+	0.39	(0.378,0.408]	chr4	203265	100	INTRON	INTRON	NOCT	ENSG00000151014.6	ENST00000280614.4:ENST00000630479.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	28	2	4.32174	4.366715	4.41169	0.0199606	0.0132362	0.109608	0.0999551
chr5	60602400	60602498	2626525	0	-	0.387755	(0.378,0.408]	chr5	249544	28	INTRON	INTRON	DEPDC1B	ENSG00000035499.13	ENST00000265036.10:ENST00000453022.6:ENST00000512078.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	28	2	4.32174	4.366715	4.41169	0.0199606	0.0132362	0.109608	0.0999551
chr8	47901425	47901517	3945144	0	-	0.402174	(0.378,0.408]	chr8	361841	6	INTRON	INTRON	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.32174	4.366715	4.41169	0.0199606	0.0132362	0.109608	0.0999551
chrX	9665108	9665208	7620670	0	+	0.38	(0.378,0.408]	chrX	779994	83	INTRON	INTRON	TBL1X	ENSG00000101849.18	ENST00000407597.7:ENST00000380961.5:ENST00000424279.6:ENST00000645353.2:ENST00000422314.5:ENST00000645686.1:ENST00000646640.1:ENST00000647172.1:ENST00000452824.5:ENST00000683056.1:ENST00000647060.1	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.32174	4.366715	4.41169	0.0199606	0.0132362	0.109608	0.0999551
chr6	98891689	98891789	3165018	0	-	0.29	(0.28,0.32]	chr6	295187	107	INTRON	INTRON	FBXL4	ENSG00000112234.9	ENST00000369244.7:ENST00000229971.2	protein_coding	protein_coding	protein_coding	protein_coding	1	66	2	3.43186	4.366695	5.30153	0.00332518	0.00160646	0.0512081	0.0367961
chr16	24195624	24195724	6327381	0	+	0.35	(0.32,0.35]	chr16	605800	40	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1	protein_coding	protein_coding	protein_coding	protein_coding	2	84	2	2.99495	4.3665899999999995	5.73823	0.00102621	4.5635e-4	0.0294094	0.0196892
chr10	24651593	24651693	4581221	0	-	0.35	(0.32,0.35]	chr10	422181	161	INTRON	INTRON	ARHGAP21	ENSG00000107863.20	ENST00000612832.4:ENST00000396432.7:ENST00000680286.1:ENST00000376410.7:ENST00000446003.5:ENST00000476499.1:ENST00000416305.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	32	2	3.77344	4.366575	4.95971	0.0596635	0.00663522	0.189982	0.0703181
chr4	102813770	102813870	2213222	0	-	0.35	(0.32,0.35]	chr4	216759	9	INTRON	INTRON	UBE2D3	ENSG00000109332.20	ENST00000453744.7:ENST00000394804.6:ENST00000394803.9:ENST00000394801.8:ENST00000343106.9:ENST00000503742.5:ENST00000321805.11:ENST00000350435.11:ENST00000338145.7:ENST00000349311.12:ENST00000504211.5:ENST00000357194.10:ENST00000505207.5:ENST00000507845.5:ENST00000502404.5:ENST00000508635.5:ENST00000505307.5:ENST00000510129.5:ENST00000508476.5:ENST00000502563.5:ENST00000508238.5:ENST00000514755.5:ENST00000508974.5:ENST00000502690.5:ENST00000508818.5:ENST00000503418.5:ENST00000508249.1:ENST00000513098.5:ENST00000503282.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	72	2	4.11417	4.36653	4.61889	0.0166646	5.52952e-5	0.102621	0.00609037
chr6	167919627	167919725	3035289	0	+	0.336735	(0.32,0.35]	chr6	282825	3	INTRON	INTRON	AFDN	ENSG00000130396.21	ENST00000683244.1:ENST00000351017.9:ENST00000344191.8:ENST00000392112.5:ENST00000392108.7:ENST00000400822.7:ENST00000447894.6:ENST00000366809.6:ENST00000366806.6:ENST00000511637.5:ENST00000497596.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	84	2	2.85974	4.36651	5.87328	0.00186579	2.6344e-4	0.0399675	0.0149561
chr15	70080052	70080152	6215327	0	-	0.34	(0.32,0.35]	chr15	593115	35	INTRON	INTRON	TLE3	ENSG00000140332.18	ENST00000558939.5:ENST00000451782.7:ENST00000317509.12:ENST00000557919.5:ENST00000560525.6:ENST00000559929.5:ENST00000560589.5:ENST00000561453.5:ENST00000557997.5:ENST00000560939.5:ENST00000559048.5:ENST00000440567.7:ENST00000558201.5:ENST00000654081.1:ENST00000559191.5:ENST00000557907.5:ENST00000558379.5:ENST00000557984.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	68	2	3.12146	4.36635	5.61124	0.00630799	1.88018e-4	0.0687526	0.011951
chr9	131211264	131211363	4216515	0	+	0.333333	(0.32,0.35]	chr9	386673	92	INTRON	INTRON	NUP214	ENSG00000126883.19	ENST00000695497.1:ENST00000695498.1:ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000524578.6:ENST00000453861.6:ENST00000483497.6:ENST00000695500.1:ENST00000650694.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	68	2	3.12146	4.36635	5.61124	0.00630799	1.88018e-4	0.0687526	0.011951
chr1	153889407	153889506	557430	0	-	0.282828	(0.28,0.32]	chr1	65989	25	INTRON	INTRON	GATAD2B	ENSG00000143614.10	ENST00000368655.5:ENST00000634544.1:ENST00000634408.1:ENST00000634401.1:ENST00000634791.1:ENST00000636014.1:ENST00000637331.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	89	2	3.06094	4.366255	5.67157	9.48957e-4	8.54457e-4	0.0281755	0.0265194
chr1	155947246	155947345	564873	0	-	0.414141	(0.408,0.44]	chr1	67518	5	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	ARHGEF2	ENSG00000116584.22	ENST00000313695.11:ENST00000361247.9:ENST00000477754.2:ENST00000673475.1:ENST00000462460.6:ENST00000470541.6:ENST00000696600.1:ENST00000696601.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	92	2	2.79763	4.366205	5.93478	5.76635e-4	7.42058e-5	0.0218153	0.00770735
chr9	127789639	127789735	4202120	0	+	0.572917	(0.57,1]	chr9	383811	2	UTR3	UTR3:EXON_MRNA	CDK9	ENSG00000136807.14	ENST00000373264.5	protein_coding	protein_coding	protein_coding	protein_coding	3	95	2	4.26956	4.36608	4.4626	1.24589e-6	9.00683e-8	6.49169e-4	1.31087e-4
chr10	31907371	31907471	4590106	0	-	0.5	(0.476,0.515]	chr10	423163	454	INTRON	INTRON	ARHGAP12	ENSG00000165322.18	ENST00000344936.7:ENST00000375245.8:ENST00000396144.8:ENST00000375250.9:ENST00000311380.8	protein_coding	protein_coding	protein_coding	protein_coding	1	69	2	2.48527	4.365955	6.24664	0.03496	2.70752e-6	0.13747500000000001	0.00105261
chr17	39352328	39352428	6766159	0	-	0.42	(0.408,0.44]	chr17	665497	87	INTRON	INTRON	FBXL20	ENSG00000108306.13	ENST00000264658.11:ENST00000583610.5:ENST00000394294.7:ENST00000577399.5:ENST00000647139.1	protein_coding	protein_coding	protein_coding	protein_coding	1	63	2	2.89795	4.365795	5.83364	0.0110735	2.74563e-5	0.0873897	0.00414215
chr12	93840818	93840918	5191543	0	+	0.41	(0.408,0.44]	chr12	490951	29	INTRON	INTRON	CRADD	ENSG00000169372.13	ENST00000332896.8:ENST00000549615.5:ENST00000551065.5:ENST00000548483.5:ENST00000542893.2:ENST00000609189.1:ENST00000550030.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	29	2	3.97679	4.365385	4.75398	0.0299485	0.00703931	0.142135	0.0718189
chr2	235554831	235554931	1041945	0	+	0.47	(0.44,0.476]	chr2	111222	299	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1:ENST00000402604.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	83	2	2.97428	4.365385	5.75649	0.00125568	4.17314e-5	0.0323608	0.00523306
chr9	96401201	96401301	4295200	0	-	0.48	(0.476,0.515]	chr9	394970	25	INTRON	INTRON	ZNF367	ENSG00000165244.7	ENST00000375256.5	protein_coding	protein_coding	protein_coding	protein_coding	2	83	2	3.05958	4.36536	5.67114	8.34691e-4	6.83906e-5	0.0266389	0.00684369
chr3	177103930	177104030	1871504	0	-	0.47	(0.44,0.476]	chr3	187402	46	INTRON	INTRON	TBL1XR1	ENSG00000177565.18	ENST00000457928.7:ENST00000430069.5:ENST00000673974.1:ENST00000352800.10:ENST00000422442.6:ENST00000428970.5:ENST00000424913.5:ENST00000437738.5:ENST00000431421.5:ENST00000635794.1:ENST00000630796.2:ENST00000450267.5:ENST00000630833.2:ENST00000431674.5:ENST00000422066.5:ENST00000443315.5:ENST00000627825.2:ENST00000427349.5:ENST00000413084.5:ENST00000637137.1:ENST00000491623.2:ENST00000637544.1:ENST00000636478.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	60	2	3.8307	4.36535	4.9	0.00423315	1.81621e-4	0.0572185	0.0117212
chr14	52548640	52548739	5894456	0	-	0.50505	(0.476,0.515]	chr14	559763	39	INTRON	INTRON	TXNDC16	ENSG00000087301.9	ENST00000281741.9:ENST00000554399.1:ENST00000557374.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	82	2	2.93859	4.364715	5.79084	0.00143107	3.67793e-5	0.0340925	0.00485247
chr11	3755602	3755701	4894743	0	-	0.343434	(0.32,0.35]	chr11	458876	18	INTRON	INTRON	NUP98	ENSG00000110713.17	ENST00000359171.8:ENST00000324932.12:ENST00000650171.1:ENST00000355260.7:ENST00000397004.8:ENST00000397007.8:ENST00000527104.5:ENST00000529379.1:ENST00000397013.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	84	2	3.02686	4.36463	5.7024	8.86699e-4	5.25722e-4	0.0271952	0.0210958
chr13	99522018	99522117	5527081	0	+	0.474747	(0.44,0.476]	chr13	528351	15	INTRON	INTRON	TM9SF2	ENSG00000125304.10	ENST00000642475.1:ENST00000376387.5:ENST00000463709.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	78	2	3.28281	4.364505	5.4462	5.83686e-4	2.0352e-4	0.0223753	0.0124395
chr7	75460310	75460410	3558670	0	-	0.48	(0.476,0.515]	chr7	331545	177	INTRON	INTRON	POM121C	ENSG00000272391.6	ENST00000615331.5:ENST00000398379.2	protein_coding	protein_coding	protein_coding	protein_coding	4	201	2	3.53819	4.364395	5.1906	1.36677e-5	2.98483e-8	0.00292824	6.72355e-5
chr10	69385740	69385822	4446563	0	+	0.341463	(0.32,0.35]	chr10	410291	5	INTRON	INTRON	HK1	ENSG00000156515.24	ENST00000436817.6:ENST00000360289.6:ENST00000448642.6:ENST00000643399.2:ENST00000298649.8:ENST00000359426.7:ENST00000493591.6:ENST00000494253.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	29	2	4.17181	4.36421	4.55661	0.04531	0.00927858	0.149888	0.0855292
chr11	78383282	78383382	5000042	0	-	0.33	(0.32,0.35]	chr11	472472	188	INTRON	INTRON	GAB2	ENSG00000033327.13	ENST00000361507.5:ENST00000526030.1:ENST00000528886.5:ENST00000530915.1:ENST00000534823.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	29	2	4.17181	4.36421	4.55661	0.04531	0.00927858	0.149888	0.0855292
chr12	75507505	75507594	5369666	0	-	0.348315	(0.32,0.35]	chr12	512229	2	INTRON	INTRON	KRR1	ENSG00000111615.14	ENST00000229214.9:ENST00000438169.6:ENST00000550023.5:ENST00000550898.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	29	2	4.17181	4.36421	4.55661	0.04531	0.00927858	0.149888	0.0855292
chr14	60840634	60840734	5737787	0	+	0.33	(0.32,0.35]	chr14	544915	214	INTRON	INTRON	MNAT1	ENSG00000020426.11	ENST00000261245.9:ENST00000539616.6:ENST00000554002.5:ENST00000554641.1:ENST00000557134.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	29	2	4.17181	4.36421	4.55661	0.04531	0.00927858	0.149888	0.0855292
chr15	68794847	68794947	6214716	0	-	0.35	(0.32,0.35]	chr15	593024	27	INTRON	INTRON	ANP32A	ENSG00000140350.15	ENST00000465139.6:ENST00000409628.6:ENST00000267918.9:ENST00000560303.1:ENST00000495420.5:ENST00000495764.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	29	2	4.17181	4.36421	4.55661	0.04531	0.00927858	0.149888	0.0855292
chr19	11611436	11611536	7018158	0	+	0.35	(0.32,0.35]	chr19	697694	67	INTRON	INTRON	ZNF627	ENSG00000198551.10	ENST00000585493.5:ENST00000587939.5:ENST00000361113.10:ENST00000588174.1	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	4.17181	4.36421	4.55661	0.04531	0.00927858	0.149888	0.0855292
chr11	46745776	46745876	4947704	0	-	0.45	(0.44,0.476]	chr11	463626	8	INTRON	INTRON	CKAP5	ENSG00000175216.15	ENST00000529230.6:ENST00000312055.9:ENST00000354558.7:ENST00000533413.5:ENST00000525896.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	78	2	2.69297	4.364129999999999	6.03529	0.00333494	4.06961e-5	0.0528877	0.00539487
chr17	59913645	59913745	6643975	0	+	0.33	(0.32,0.35]	chr17	648819	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	RPS6KB1	ENSG00000108443.14	ENST00000393021.7:ENST00000472940.5:ENST00000225577.9:ENST00000477179.5:ENST00000443572.6:ENST00000489824.1:ENST00000406116.7:ENST00000592726.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	92	2	2.59855	4.36399	6.12943	0.00682041	1.4081e-5	0.0712518	0.00279379
chr1	21031282	21031382	392164	0	-	0.35	(0.32,0.35]	chr1	46809	281	INTRON	INTRON	EIF4G3	ENSG00000075151.24	ENST00000374935.7:ENST00000602326.6:ENST00000685872.1:ENST00000264211.13:ENST00000686579.1:ENST00000688741.1:ENST00000684485.1:ENST00000681717.1:ENST00000681767.1:ENST00000400422.6:ENST00000634879.2:ENST00000693470.1:ENST00000685814.1:ENST00000356916.7:ENST00000682284.1:ENST00000438975.5:ENST00000411888.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	29	2	4.27113	4.36371	4.45629	0.0246089	0.0199982	0.120668	0.12011
chr1	65350203	65350302	136498	0	+	0.333333	(0.32,0.35]	chr1	15358	41	INTRON	INTRON	DNAJC6	ENSG00000116675.16	ENST00000463018.5:ENST00000494710.6:ENST00000263441.11:ENST00000395325.7:ENST00000483402.1:ENST00000371069.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	29	2	4.27113	4.36371	4.45629	0.0246089	0.0199982	0.120668	0.12011
chr11	125667535	125667635	4883416	0	+	0.35	(0.32,0.35]	chr11	456613	105	INTRON	INTRON	CHEK1	ENSG00000149554.14	ENST00000428830.6:ENST00000524737.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	29	2	4.27113	4.36371	4.45629	0.0246089	0.0199982	0.120668	0.12011
chr15	94857862	94857962	6105207	0	+	0.33	(0.32,0.35]	chr15	581666	6	INTRON	INTRON	ENSG00000277654	ENSG00000277654.6	ENST00000618611.4:ENST00000648065.1:ENST00000618377.1:ENST00000621842.4:ENST00000615751.4:ENST00000614581.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	0	29	2	4.27113	4.36371	4.45629	0.0246089	0.0199982	0.120668	0.12011
chr16	15680827	15680926	6307195	0	+	0.323232	(0.32,0.35]	chr16	603439	25	INTRON	INTRON	NDE1	ENSG00000072864.16	ENST00000396355.5:ENST00000674888.1:ENST00000675171.1:ENST00000675951.1:ENST00000674900.1:ENST00000674588.1:ENST00000674538.1:ENST00000396354.6:ENST00000675926.1:ENST00000573203.5:ENST00000674995.1:ENST00000674554.1:ENST00000674581.1:ENST00000577101.6:ENST00000572756.6:ENST00000574163.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	29	2	4.27113	4.36371	4.45629	0.0246089	0.0199982	0.120668	0.12011
chr2	167849918	167850018	1258299	0	-	0.35	(0.32,0.35]	chr2	133322	343	INTRON	INTRON	B3GALT1-AS1	ENSG00000235335.3	ENST00000430546.2:ENST00000657553.1:ENST00000670221.1:ENST00000436982.2	lncRNA	lncRNA	lncRNA	lncRNA	0	29	2	4.27113	4.36371	4.45629	0.0246089	0.0199982	0.120668	0.12011
chr5	112778114	112778213	2452296	0	+	0.343434	(0.32,0.35]	chr5	234938	20	INTRON	INTRON	APC	ENSG00000134982.17	ENST00000507379.5:ENST00000257430.9:ENST00000508624.5:ENST00000508376.6:ENST00000512211.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	29	2	4.27113	4.36371	4.45629	0.0246089	0.0199982	0.120668	0.12011
chr6	13806524	13806624	3059443	0	-	0.33	(0.32,0.35]	chr6	284605	2	SS5_PROX	SS5_PROX:INTRON	MCUR1	ENSG00000050393.12	ENST00000379170.9:ENST00000488770.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	29	2	4.27113	4.36371	4.45629	0.0246089	0.0199982	0.120668	0.12011
chr7	96280931	96281030	3575844	0	-	0.343434	(0.32,0.35]	chr7	333071	32	INTRON	INTRON	SLC25A13	ENSG00000004864.14	ENST00000265631.10:ENST00000416240.6:ENST00000472162.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	29	2	4.27113	4.36371	4.45629	0.0246089	0.0199982	0.120668	0.12011
chrX	119575597	119575695	7713431	0	+	0.346939	(0.32,0.35]	chrX	789233	3	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	UBE2A	ENSG00000077721.17	ENST00000696539.1:ENST00000696533.1:ENST00000696534.1:ENST00000346330.6:ENST00000625938.2:ENST00000631185.2:ENST00000630695.2:ENST00000371558.7:ENST00000469205.2:ENST00000629303.2:ENST00000628549.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	29	2	4.27113	4.36371	4.45629	0.0246089	0.0199982	0.120668	0.12011
chr21	14516098	14516195	7427899	0	-	0.319588	(0.28,0.32]	chr21	757750	32	INTRON	INTRON	SAMSN1	ENSG00000155307.19	ENST00000647101.1:ENST00000644288.1:ENST00000400564.5:ENST00000400566.6:ENST00000285670.7:ENST00000619120.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	210	2	4.18711	4.362965	4.53882	1.93674e-5	1.76227e-6	0.00356815	8.01021e-4
chr5	141566856	141566955	2739638	0	-	0.383838	(0.378,0.408]	chr5	258073	63	INTRON	INTRON	DIAPH1	ENSG00000131504.18	ENST00000647433.1:ENST00000389054.8:ENST00000518047.5	protein_coding	protein_coding	protein_coding	protein_coding	1	59	2	3.60429	4.362785	5.12128	0.00251746	5.71664e-4	0.0446195	0.0217398
chr21	29045477	29045575	7390183	0	+	0.367347	(0.35,0.378]	chr21	753021	15	INTRON	INTRON	USP16	ENSG00000156256.15	ENST00000399975.7:ENST00000334352.8:ENST00000474835.5:ENST00000399976.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	66	2	2.89003	4.36246	5.83489	0.0122391	4.33823e-5	0.0910127	0.00532052
chr2	239969962	239970062	1345157	0	-	0.36	(0.35,0.378]	chr2	141030	2	SS3_PROX	SS3_PROX:INTRON	NDUFA10	ENSG00000130414.13	ENST00000419408.5:ENST00000679183.1:ENST00000677057.1:ENST00000676782.1:ENST00000677407.1:ENST00000676929.1:ENST00000678455.1:ENST00000252711.7:ENST00000677692.1:ENST00000476216.6:ENST00000677395.1:ENST00000678188.1:ENST00000677979.1:ENST00000678914.1:ENST00000678562.1:ENST00000678832.1:ENST00000677155.1:ENST00000677764.1:ENST00000677294.1:ENST00000678468.1:ENST00000677324.1:ENST00000678158.1:ENST00000676491.1:ENST00000471378.1:ENST00000677114.1:ENST00000404554.5:ENST00000620965.5:ENST00000485344.6:ENST00000679308.1:ENST00000677567.1:ENST00000679158.1:ENST00000443626.5:ENST00000444548.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	31	2	3.80129	4.36242	4.92355	0.0504034	0.00573514	0.17488	0.0657377
chr16	70534608	70534707	6385249	0	+	0.313131	(0.28,0.32]	chr16	613891	16	INTRON	INTRON	SF3B3	ENSG00000189091.13	ENST00000302516.10	protein_coding	protein_coding	protein_coding	protein_coding	1	72	2	2.91851	4.3623	5.80609	0.0130672	1.23223e-4	0.093385	0.00949625
chr4	159255685	159255785	2075035	0	+	0.25	[0,0.28]	chr4	205218	115	INTRON	INTRON	RAPGEF2	ENSG00000109756.10	ENST00000644474.1:ENST00000691494.1:ENST00000505478.5:ENST00000504604.5:ENST00000644902.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	72	2	3.51361	4.362075	5.21054	0.00758653	0.00142208	0.0749063	0.0346633
chr8	140974868	140974968	4079813	0	-	0.37	(0.35,0.378]	chr8	370582	202	INTRON	INTRON	PTK2	ENSG00000169398.20	ENST00000696786.1:ENST00000522684.5:ENST00000395218.3:ENST00000521059.5:ENST00000519993.5:ENST00000340930.7:ENST00000524357.5:ENST00000521791.5:ENST00000523067.5:ENST00000520828.5:ENST00000519881.5:ENST00000520892.5:ENST00000523803.5:ENST00000521907.5:ENST00000517453.5:ENST00000520045.5:ENST00000521332.5:ENST00000524040.5:ENST00000523679.1:ENST00000524257.5:ENST00000523797.1:ENST00000519635.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	61	2	3.10863	4.3620350000000006	5.61544	0.00470896	5.06729e-4	0.0631419	0.020816
chr11	47170633	47170730	4948843	0	-	0.391753	(0.378,0.408]	chr11	463893	12	INTRON	INTRON	ARFGAP2	ENSG00000149182.15	ENST00000426335.6:ENST00000627920.2:ENST00000524782.6:ENST00000395449.7:ENST00000533243.5:ENST00000527776.5:ENST00000526342.5:ENST00000527927.5:ENST00000532478.5:ENST00000532438.5:ENST00000529455.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	63	2	3.10274	4.362019999999999	5.6213	0.00586642	9.58854e-5	0.0668095	0.00822887
chr3	5154333	5154433	1353896	0	+	0.5	(0.476,0.515]	chr3	142361	254	INTRON	INTRON	ARL8B	ENSG00000134108.14	ENST00000429403.5:ENST00000256496.8:ENST00000455168.5:ENST00000444332.1:ENST00000419534.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	130	2	2.56482	4.3619900000000005	6.15916	2.05882e-4	1.89343e-5	0.0124708	0.00354138
chr16	28734119	28734219	6334147	0	+	0.53	(0.515,0.57]	chr16	606470	2	SS3_PROX	SS3_PROX:INTRON	EIF3C	ENSG00000184110.15	ENST00000566501.5:ENST00000395587.5:ENST00000331666.11:ENST00000564243.5:ENST00000566866.5:ENST00000565932.5:ENST00000569005.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	27	2	4.04086	4.36198	4.6831	0.0197045	0.00471288	0.120063	0.0600108
chr21	22332200	22332300	7385690	0	+	0.57	(0.515,0.57]	chr21	752727	1190	INTRON	INTRON	ENSG00000226043	ENSG00000226043.2	ENST00000667099.1:ENST00000654607.1:ENST00000444130.1	lncRNA	lncRNA	lncRNA	lncRNA	0	27	2	4.04086	4.36198	4.6831	0.0197045	0.00471288	0.120063	0.0600108
chr4	7013848	7013947	1923683	0	+	0.525253	(0.515,0.57]	chr4	193143	27	INTRON	INTRON	TBC1D14	ENSG00000132405.19	ENST00000448507.5:ENST00000409757.9:ENST00000410031.5:ENST00000451522.6:ENST00000446947.6	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.04086	4.36198	4.6831	0.0197045	0.00471288	0.120063	0.0600108
chr6	10950925	10951024	2812413	0	+	0.40404	(0.378,0.408]	chr6	264672	78	INTRON	INTRON	SYCP2L	ENSG00000153157.13	ENST00000341041.8:ENST00000283141.11:ENST00000543878.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	68	2	3.73783	4.3618500000000004	4.98587	0.00152268	4.8181e-4	0.0360297	0.0203411
chr5	43483421	43483521	2614836	0	-	0.64	(0.57,1]	chr5	248566	2	SS5_PROX	SS5_PROX:INTRON	TMEM267	ENSG00000151881.15	ENST00000397080.8:ENST00000500337.6:ENST00000512085.5:ENST00000511525.1:ENST00000510130.1:ENST00000506860.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	68	2	2.69093	4.361775	6.03262	2.65452e-4	3.89657e-7	0.0144243	3.48202e-4
chr3	47098961	47099059	1680942	0	-	0.469388	(0.44,0.476]	chr3	171573	10	EXON_MRNA	EXON_MRNA:INTRON	SETD2	ENSG00000181555.22	ENST00000691544.1:ENST00000638947.2:ENST00000686876.1:ENST00000431180.5:ENST00000409792.4:ENST00000330022.11:ENST00000686773.1:ENST00000685005.1:ENST00000690461.1:ENST00000685505.1:ENST00000692883.1:ENST00000693321.1:ENST00000688290.1:ENST00000691902.1:ENST00000690157.1:ENST00000692362.1:ENST00000685237.1:ENST00000445387.5:ENST00000685399.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	58	2	3.63638	4.361485	5.08659	0.00226401	4.74104e-4	0.0425438	0.0196816
chr16	9118879	9118978	6285646	0	+	0.323232	(0.32,0.35]	chr16	601935	21	UTR3	UTR3:EXON_MRNA	C16orf72	ENSG00000182831.12	ENST00000327827.12	protein_coding	protein_coding	protein_coding	protein_coding	1	63	2	3.53854	4.361345	5.18415	0.00333629	9.09596e-4	0.0512081	0.0277043
chr2	65372031	65372131	1143590	0	-	0.41	(0.408,0.44]	chr2	122237	54	INTRON	INTRON	SPRED2	ENSG00000198369.10	ENST00000356388.9:ENST00000452315.5:ENST00000440972.1	protein_coding	protein_coding	protein_coding	protein_coding	1	62	2	3.37162	4.361245	5.35087	0.00208674	3.00323e-4	0.0411801	0.0155054
chr17	75205994	75206094	6674258	0	+	0.53	(0.515,0.57]	chr17	651336	2	SS5_PROX	SS5_PROX:INTRON	NUP85	ENSG00000125450.11	ENST00000583569.5:ENST00000245544.9:ENST00000583948.5:ENST00000579324.5:ENST00000582833.5:ENST00000449421.6:ENST00000581104.5:ENST00000579298.5:ENST00000583548.1:ENST00000577208.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	55	2	2.98677	4.361195	5.73562	0.00632549	6.01042e-5	0.0722266	0.00680853
chr11	66664456	66664556	4811295	0	+	0.47	(0.44,0.476]	chr11	447918	122	INTRON	INTRON	RBM4	ENSG00000173933.21	ENST00000396053.9	protein_coding	protein_coding	protein_coding	protein_coding	1	58	2	3.14559	4.36107	5.57655	0.00384923	3.3967e-4	0.0562562	0.0170719
chr6	169663462	169663562	3266724	0	-	0.45	(0.44,0.476]	chr6	303202	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	WDR27	ENSG00000184465.16	ENST00000448612.6:ENST00000648472.1:ENST00000423258.5:ENST00000647790.1:ENST00000546525.5:ENST00000467418.1:ENST00000647873.1:ENST00000649303.1:ENST00000647889.1:ENST00000648017.1:ENST00000486490.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	82	2	2.78046	4.360655	5.94085	0.0028389	1.53199e-5	0.0473151	0.00293868
chr1	99709759	99709850	514752	0	-	0.428571	(0.408,0.44]	chr1	60328	1	INTRON	INTRON	FRRS1	ENSG00000156869.14	ENST00000646001.2:ENST00000287474.9	protein_coding	protein_coding	protein_coding	protein_coding	2	86	2	2.36185	4.360545	6.35924	0.0133164	1.23058e-6	0.094512	6.46298e-4
chr1	51740511	51740611	100634	0	+	0.23	[0,0.28]	chr1	13281	3	SS5_PROX	SS5_PROX:INTRON	OSBPL9	ENSG00000117859.19	ENST00000371714.5:ENST00000428468.6:ENST00000447887.5:ENST00000495776.5:ENST00000435274.6:ENST00000453295.5:ENST00000489990.5:ENST00000484890.5:ENST00000532975.5:ENST00000534040.5:ENST00000527631.5:ENST00000531828.5:ENST00000361556.9:ENST00000473207.6:ENST00000533884.5:ENST00000481937.5:ENST00000526917.5:ENST00000462759.5:ENST00000486942.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	32	2	3.96122	4.36043	4.75964	0.0617993	0.0232081	0.193423	0.118148
chr1	235380549	235380649	339805	0	+	0.21	[0,0.28]	chr1	39550	4	SS5_PROX	SS5_PROX:INTRON	TBCE	ENSG00000285053.1:ENSG00000284770.2	ENST00000644055.1:ENST00000645655.1:ENST00000647428.1:ENST00000643418.1:ENST00000646624.1:ENST00000647186.1:ENST00000646528.1:ENST00000645351.1:ENST00000643410.1:ENST00000645205.1:ENST00000645836.1:ENST00000642503.1:ENST00000646281.1:ENST00000645069.1:ENST00000644680.1:ENST00000643758.1:ENST00000645578.1:ENST00000642431.1:ENST00000644604.1:ENST00000651186.1:ENST00000643125.1:ENST00000406207.5:ENST00000642463.1:ENST00000645899.1:ENST00000647233.1:ENST00000642926.1:ENST00000644578.1:ENST00000647418.1:ENST00000645372.1:ENST00000645582.1:ENST00000643994.1:ENST00000647407.1:ENST00000642610.2:ENST00000644037.1:ENST00000646463.1:ENST00000366601.8:ENST00000643524.1:ENST00000646536.1:ENST00000643142.1:ENST00000644838.1:ENST00000646286.1:ENST00000646186.1:ENST00000643615.1:ENST00000543662.4:ENST00000646848.1:ENST00000647332.1:ENST00000647489.1:ENST00000644625.1:ENST00000646384.1:ENST00000645551.1:ENST00000646821.1:ENST00000472011.6:ENST00000643238.1:ENST00000646104.1:ENST00000645662.1:ENST00000643993.1:ENST00000645964.1:ENST00000642339.1:ENST00000644217.1:ENST00000642372.1:ENST00000646929.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	32	2	3.96122	4.36043	4.75964	0.0617993	0.0232081	0.193423	0.118148
chr10	97739369	97739467	4505310	0	+	0.255102	[0,0.28]	chr10	414776	3	INTRON	INTRON	ZFYVE27	ENSG00000155256.18	ENST00000337540.11:ENST00000370613.7:ENST00000370610.7:ENST00000357540.8:ENST00000393677.8:ENST00000423811.3:ENST00000684270.1:ENST00000359980.5	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	3.96122	4.36043	4.75964	0.0617993	0.0232081	0.193423	0.118148
chr4	134281925	134282025	2244316	0	-	0.26	[0,0.28]	chr4	219400	220	INTRON	INTRON	ENSG00000251199	ENSG00000251199.6	ENST00000658435.1:ENST00000658033.1:ENST00000668641.1:ENST00000670570.1:ENST00000661637.1:ENST00000663124.1:ENST00000668013.1:ENST00000654404.1:ENST00000665766.1:ENST00000663875.1:ENST00000664397.1:ENST00000667687.1:ENST00000656052.1:ENST00000671422.1:ENST00000665122.1:ENST00000669907.1:ENST00000504728.6:ENST00000654413.1:ENST00000653580.1	lncRNA	lncRNA	lncRNA	lncRNA	0	32	2	3.96122	4.36043	4.75964	0.0617993	0.0232081	0.193423	0.118148
chr3	48542013	48542110	1688764	0	-	0.453608	(0.44,0.476]	chr3	172560	19	INTRON	INTRON	PFKFB4	ENSG00000114268.12	ENST00000232375.8:ENST00000490115.5:ENST00000383734.6:ENST00000416568.5:ENST00000417753.5:ENST00000445633.5:ENST00000452531.5:ENST00000468162.5:ENST00000412035.5:ENST00000471890.6:ENST00000496767.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	61	2	3.17572	4.360390000000001	5.54506	0.00427037	1.21665e-4	0.0573912	0.00942499
chr15	75863569	75863669	6065264	0	+	0.4	(0.378,0.408]	chr15	577549	32	INTRON	INTRON	UBE2Q2	ENSG00000140367.12	ENST00000569423.5:ENST00000267938.9:ENST00000561723.5:ENST00000561851.5:ENST00000426727.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	109	2	2.83358	4.35991	5.88624	1.78662e-4	1.19481e-4	0.0116621	0.00988798
chr1	203834898	203834996	297088	0	+	0.367347	(0.35,0.378]	chr1	34186	4	INTRON	INTRON	ZC3H11A:ZBED6	ENSG00000058673.17:ENSG00000257315.3	ENST00000367210.3:ENST00000453771.5:ENST00000638800.1:ENST00000367214.5:ENST00000639812.1:ENST00000367212.7:ENST00000332127.8:ENST00000550078.2:ENST00000495527.5:ENST00000640465.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	29	2	3.97032	4.35946	4.7486	0.0578667	0.00418965	0.167723	0.0591344
chr11	32399158	32399254	4939729	0	-	0.354167	(0.35,0.378]	chr11	462710	12	INTRON	INTRON	WT1	ENSG00000184937.16	ENST00000379077.9:ENST00000452863.10:ENST00000379079.8:ENST00000530998.5:ENST00000332351.9:ENST00000652724.1:ENST00000640146.2:ENST00000652579.1:ENST00000639907.2:ENST00000651794.1:ENST00000651459.1:ENST00000448076.9:ENST00000527882.5:ENST00000639563.3:ENST00000526685.2:ENST00000527775.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	29	2	3.97032	4.35946	4.7486	0.0578667	0.00418965	0.167723	0.0591344
chr15	93010977	93011074	6104859	0	+	0.350515	(0.35,0.378]	chr15	581631	13	INTRON	INTRON	CHD2	ENSG00000173575.22	ENST00000626874.2:ENST00000394196.9:ENST00000625662.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	29	2	3.97032	4.35946	4.7486	0.0578667	0.00418965	0.167723	0.0591344
chr2	238437503	238437602	1052673	0	+	0.363636	(0.35,0.378]	chr2	111993	11	INTRON	INTRON	ASB1	ENSG00000065802.12	ENST00000463352.5:ENST00000264607.9:ENST00000409297.1:ENST00000438264.5:ENST00000491653.1:ENST00000468122.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	29	2	3.97032	4.35946	4.7486	0.0578667	0.00418965	0.167723	0.0591344
chr5	43610149	43610247	2350989	0	+	0.357143	(0.35,0.378]	chr5	226792	2	INTRON	INTRON	NNT	ENSG00000112992.18	ENST00000505678.6:ENST00000512422.5:ENST00000264663.9:ENST00000652986.1:ENST00000670904.1:ENST00000653251.1:ENST00000660752.1:ENST00000654405.1:ENST00000344920.9:ENST00000657973.1:ENST00000654931.1:ENST00000657172.1:ENST00000512996.6:ENST00000658729.1:ENST00000660676.1:ENST00000671668.1:ENST00000662525.1:ENST00000669601.1:ENST00000656666.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	29	2	3.97032	4.35946	4.7486	0.0578667	0.00418965	0.167723	0.0591344
chr1	148904643	148904742	214796	0	+	0.313131	(0.28,0.32]	chr1	23778	144	INTRON	INTRON	PDE4DIP	ENSG00000178104.20	ENST00000695768.1:ENST00000695767.1:ENST00000695766.1:ENST00000530472.5:ENST00000695794.1:ENST00000524974.5:ENST00000620605.4:ENST00000585156.5:ENST00000695769.1:ENST00000618462.4:ENST00000695795.1:ENST00000617031.4:ENST00000617527.4:ENST00000533259.1:ENST00000619981.4:ENST00000617454.4:ENST00000613995.4:ENST00000621371.4:ENST00000534536.5:ENST00000528129.5:ENST00000369356.8:ENST00000533845.1:ENST00000526445.1:ENST00000369354.7:ENST00000369347.8:ENST00000369349.7:ENST00000369351.7:ENST00000612094.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	30	2	4.03345	4.359360000000001	4.68527	0.0704058	0.00819419	0.184298	0.0810802
chr13	27143093	27143193	5566279	0	-	0.29	(0.28,0.32]	chr13	532032	261	INTRON	INTRON	USP12	ENSG00000152484.14	ENST00000282344.11	protein_coding	protein_coding	protein_coding	protein_coding	0	30	2	4.03345	4.359360000000001	4.68527	0.0704058	0.00819419	0.184298	0.0810802
chr13	79548027	79548127	5516633	0	+	0.3	(0.28,0.32]	chr13	527540	3	SS3_PROX	SS3_PROX:INTRON	NDFIP2	ENSG00000102471.15	ENST00000612570.4:ENST00000218652.12:ENST00000650134.1:ENST00000487865.5:ENST00000465762.5:ENST00000620924.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	30	2	4.03345	4.359360000000001	4.68527	0.0704058	0.00819419	0.184298	0.0810802
chr14	60290703	60290799	5736630	0	+	0.302083	(0.28,0.32]	chr14	544864	4	INTRON	INTRON	PPM1A	ENSG00000100614.18	ENST00000325642.7:ENST00000531143.6:ENST00000532036.2:ENST00000395076.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	30	2	4.03345	4.359360000000001	4.68527	0.0704058	0.00819419	0.184298	0.0810802
chr15	60447069	60447169	6195677	0	-	0.29	(0.28,0.32]	chr15	590410	41	INTRON	INTRON	ICE2	ENSG00000128915.12	ENST00000261520.9:ENST00000558181.5:ENST00000561328.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	30	2	4.03345	4.359360000000001	4.68527	0.0704058	0.00819419	0.184298	0.0810802
chr18	2770947	2771032	6866070	0	+	0.305882	(0.28,0.32]	chr18	680165	5	INTRON	INTRON	SMCHD1	ENSG00000101596.17	ENST00000320876.11:ENST00000688342.1:ENST00000693213.1:ENST00000577880.5:ENST00000584897.5:ENST00000686763.1:ENST00000686864.1:ENST00000688708.1:ENST00000645355.1:ENST00000688964.1:ENST00000685656.1:ENST00000689034.1:ENST00000693522.1:ENST00000583344.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	30	2	4.03345	4.359360000000001	4.68527	0.0704058	0.00819419	0.184298	0.0810802
chr7	102372737	102372837	3371162	0	+	0.4	(0.378,0.408]	chr7	315430	63	INTRON	INTRON	PRKRIP1:ENSG00000239969	ENSG00000128563.13:ENSG00000239969.6	ENST00000477886.5:ENST00000469763.5:ENST00000482549.5:ENST00000496391.5:ENST00000484974.5:ENST00000492837.1:ENST00000482465.5	protein_coding	protein_coding	protein_coding:transcribed_unprocessed_pseudogene	protein_coding:processed_transcript	1	63	2	3.05502	4.35926	5.6635	0.00689519	7.77533e-5	0.0717484	0.00735438
chr2	9548011	9548110	1064414	0	-	0.484848	(0.476,0.515]	chr2	113556	39	INTRON	INTRON	ADAM17	ENSG00000151694.14	ENST00000310823.8:ENST00000648548.1:ENST00000649227.1:ENST00000648857.1:ENST00000647979.1:ENST00000647610.1:ENST00000650116.1:ENST00000647622.1:ENST00000649972.1:ENST00000650241.1:ENST00000618923.2:ENST00000478059.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	93	2	2.97663	4.35909	5.74155	2.26055e-4	1.47804e-4	0.0132815	0.0111067
chr2	149587349	149587433	1242976	0	-	0.595238	(0.57,1]	chr2	131937	4	UTR5	UTR5:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MMADHC	ENSG00000168288.13	ENST00000303319.10:ENST00000428879.5:ENST00000422782.2:ENST00000460311.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	39	2	3.82801	4.358995	4.88998	4.016e-4	9.41714e-5	0.0185763	0.00813008
chr9	137385065	137385164	4376843	0	-	0.575758	(0.57,1]	chr9	403535	13	INTRON	INTRON	EXD3	ENSG00000187609.16	ENST00000340951.9:ENST00000490886.5:ENST00000460390.6:ENST00000479452.5:ENST00000475006.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	39	2	3.82801	4.358995	4.88998	4.016e-4	9.41714e-5	0.0185763	0.00813008
chr3	60535209	60535309	1714966	0	-	0.36	(0.35,0.378]	chr3	176138	4545	INTRON	INTRON	FHIT	ENSG00000189283.10	ENST00000492590.6:ENST00000476844.5:ENST00000468189.5:ENST00000488467.5	protein_coding	protein_coding	protein_coding	protein_coding	1	60	2	3.26794	4.358565	5.44919	0.00257067	9.66659e-4	0.0466761	0.0282401
chr1	77794937	77795037	147703	0	+	0.48	(0.476,0.515]	chr1	16483	112	INTRON	INTRON	MIGA1	ENSG00000180488.16	ENST00000443751.3:ENST00000643390.1:ENST00000643143.1:ENST00000645756.1:ENST00000642959.1:ENST00000370791.8:ENST00000646892.1:ENST00000645526.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	28	2	4.01777	4.358475	4.69918	0.0411361	0.00400966	0.1451	0.057767
chr17	44856476	44856574	6781095	0	-	0.479592	(0.476,0.515]	chr17	668771	11	INTRON	INTRON	EFTUD2	ENSG00000108883.13	ENST00000426333.7:ENST00000586276.5:ENST00000592576.5:ENST00000591382.5:ENST00000590367.5:ENST00000590977.5:ENST00000590124.5:ENST00000402521.7:ENST00000588340.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	28	2	4.01777	4.358475	4.69918	0.0411361	0.00400966	0.1451	0.057767
chr2	233846704	233846800	1343781	0	-	0.510417	(0.476,0.515]	chr2	140841	5	INTRON	INTRON	HJURP	ENSG00000123485.12	ENST00000432087.5:ENST00000441687.5:ENST00000411486.7:ENST00000414924.5:ENST00000454020.1:ENST00000453122.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	28	2	4.01777	4.358475	4.69918	0.0411361	0.00400966	0.1451	0.057767
chr20	3193181	3193277	7306579	0	-	0.479167	(0.476,0.515]	chr20	743976	10	INTRON	INTRON	DDRGK1	ENSG00000198171.13	ENST00000354488.8:ENST00000470203.1:ENST00000380201.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	28	2	4.01777	4.358475	4.69918	0.0411361	0.00400966	0.1451	0.057767
chr20	3214880	3214980	7224338	0	+	0.49	(0.476,0.515]	chr20	734113	2	SS3_PROX	SS3_PROX:INTRON	ITPA	ENSG00000125877.13	ENST00000483354.5:ENST00000460676.5:ENST00000490838.6:ENST00000380113.8:ENST00000609835.5:ENST00000460550.5:ENST00000455664.6:ENST00000399838.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	28	2	4.01777	4.358475	4.69918	0.0411361	0.00400966	0.1451	0.057767
chr4	139102653	139102753	2246595	0	-	0.51	(0.476,0.515]	chr4	219567	3	SS3_PROX	SS3_PROX:INTRON	ELF2	ENSG00000109381.21	ENST00000394235.6:ENST00000686138.1:ENST00000379550.5:ENST00000511184.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	28	2	4.01777	4.358475	4.69918	0.0411361	0.00400966	0.1451	0.057767
chr19	36468918	36469018	7174108	0	-	0.29	(0.28,0.32]	chr19	725000	120	INTRON	INTRON	ZNF566	ENSG00000186017.16	ENST00000493391.6:ENST00000392170.7:ENST00000452939.7:ENST00000427002.2:ENST00000424129.7:ENST00000434377.6:ENST00000472909.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	30	2	4.12807	4.35841	4.58875	0.0338135	0.0230574	0.146709	0.118056
chr12	120438713	120438810	5235252	0	+	0.350515	(0.35,0.378]	chr12	496767	3	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	COX6A1	ENSG00000111775.3	ENST00000550009.1:ENST00000229379.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	29	2	4.07186	4.3582149999999995	4.64457	0.0279478	0.012652	0.137011	0.0926667
chr14	103468286	103468386	5826486	0	+	0.36	(0.35,0.378]	chr14	552896	1	SS5_PROX	SS5_PROX:INTRON	MARK3	ENSG00000075413.19	ENST00000678179.1:ENST00000676838.1:ENST00000677348.1:ENST00000677404.1:ENST00000676694.1:ENST00000676938.1:ENST00000678619.1:ENST00000676897.1:ENST00000677214.1:ENST00000677942.1:ENST00000676830.1:ENST00000678999.1:ENST00000677228.1:ENST00000556744.2:ENST00000677104.1:ENST00000679330.1:ENST00000560417.6:ENST00000440884.7:ENST00000676475.1:ENST00000677035.1:ENST00000678022.1:ENST00000677560.1:ENST00000561314.6:ENST00000429436.7:ENST00000677118.1:ENST00000676564.1:ENST00000678169.1:ENST00000678175.1:ENST00000678897.1:ENST00000678278.1:ENST00000676645.1:ENST00000677829.1:ENST00000678302.1:ENST00000677133.1:ENST00000678207.1:ENST00000677360.1:ENST00000676905.1:ENST00000678343.1:ENST00000677347.1:ENST00000678071.1:ENST00000677432.1:ENST00000678237.1:ENST00000677604.1:ENST00000676518.1:ENST00000677051.1:ENST00000677857.1:ENST00000677869.1:ENST00000416682.6:ENST00000303622.13:ENST00000216288.11:ENST00000679105.1:ENST00000553942.5:ENST00000335102.9:ENST00000678091.1:ENST00000561071.5:ENST00000676745.1:ENST00000554627.5:ENST00000558953.1:ENST00000559274.1:ENST00000677410.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	29	2	4.07186	4.3582149999999995	4.64457	0.0279478	0.012652	0.137011	0.0926667
chr15	44335767	44335866	6013540	0	+	0.373737	(0.35,0.378]	chr15	572855	33	INTRON	INTRON	GOLM2	ENSG00000166734.20	ENST00000299957.11:ENST00000559222.5:ENST00000557945.5:ENST00000650436.1:ENST00000345795.6:ENST00000559037.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	29	2	4.07186	4.3582149999999995	4.64457	0.0279478	0.012652	0.137011	0.0926667
chr19	21187690	21187788	7040421	0	+	0.377551	(0.35,0.378]	chr19	701962	38	UTR3	UTR3:EXON_MRNA:INTRON	ZNF431	ENSG00000196705.8	ENST00000594425.5:ENST00000311048.11:ENST00000593426.1:ENST00000594821.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	29	2	4.07186	4.3582149999999995	4.64457	0.0279478	0.012652	0.137011	0.0926667
chr22	25467466	25467565	7489334	0	+	0.363636	(0.35,0.378]	chr22	764216	59	INTRON	INTRON	CRYBB2P1	ENSG00000100058.13	ENST00000686640.1:ENST00000509460.3:ENST00000354451.6	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	29	2	4.07186	4.3582149999999995	4.64457	0.0279478	0.012652	0.137011	0.0926667
chr1	52730475	52730575	103916	0	+	0.48	(0.476,0.515]	chr1	13634	34	INTRON	INTRON	ZYG11B	ENSG00000162378.13	ENST00000294353.7:ENST00000545132.5	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.10113	4.357575000000001	4.61402	0.0226984	0.00947755	0.124921	0.0817766
chr1	229275746	229275846	333316	0	+	0.49	(0.476,0.515]	chr1	38810	40	INTRON	INTRON	RAB4A	ENSG00000168118.12	ENST00000618010.4:ENST00000481981.1:ENST00000366690.5:ENST00000473894.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	28	2	4.10113	4.357575000000001	4.61402	0.0226984	0.00947755	0.124921	0.0817766
chr19	24122470	24122570	7044771	0	+	0.48	(0.476,0.515]	chr19	702414	153	INTRON	INTRON	ZNF254	ENSG00000213096.11	ENST00000613065.4:ENST00000611359.3:ENST00000616028.2:ENST00000594886.5:ENST00000357002.5:ENST00000595187.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	28	2	4.10113	4.357575000000001	4.61402	0.0226984	0.00947755	0.124921	0.0817766
chr19	55039629	55039725	7212054	0	-	0.5	(0.476,0.515]	chr19	732216	3	EXON_LNCRNA	EXON_LNCRNA:SS3_PROX:INTRON	RDH13	ENSG00000160439.16	ENST00000592423.1:ENST00000591960.1:ENST00000586331.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	0	28	2	4.10113	4.357575000000001	4.61402	0.0226984	0.00947755	0.124921	0.0817766
chr2	42318850	42318942	760012	0	+	0.5	(0.476,0.515]	chr2	86233	10	INTRON	INTRON	EML4	ENSG00000143924.19	ENST00000318522.10:ENST00000402711.6:ENST00000401738.3:ENST00000406175.3:ENST00000472632.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	28	2	4.10113	4.357575000000001	4.61402	0.0226984	0.00947755	0.124921	0.0817766
chr5	150487405	150487505	2519697	0	+	0.48	(0.476,0.515]	chr5	241013	6	INTRON	INTRON	NDST1	ENSG00000070614.15	ENST00000522491.1:ENST00000519157.1:ENST00000524161.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	28	2	4.10113	4.357575000000001	4.61402	0.0226984	0.00947755	0.124921	0.0817766
chr5	154780577	154780677	2527250	0	+	0.49	(0.476,0.515]	chr5	241610	227	INTRON	INTRON	LARP1	ENSG00000155506.19	ENST00000687700.1:ENST00000336314.9:ENST00000690816.1:ENST00000518297.6:ENST00000517616.5:ENST00000518892.1:ENST00000521577.1:ENST00000519931.5:ENST00000524248.5:ENST00000685946.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	28	2	4.10113	4.357575000000001	4.61402	0.0226984	0.00947755	0.124921	0.0817766
chr7	5477489	5477589	3472567	0	-	0.51	(0.476,0.515]	chr7	324711	18	UTR3	UTR3:EXON_MRNA:INTRON	FBXL18	ENSG00000155034.20	ENST00000415009.5:ENST00000382368.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	28	2	4.10113	4.357575000000001	4.61402	0.0226984	0.00947755	0.124921	0.0817766
chr7	106785545	106785645	3376175	0	+	0.51	(0.476,0.515]	chr7	316138	28	INTRON	INTRON	LINC02577	ENSG00000228742.11	ENST00000658697.1:ENST00000490162.3	lncRNA	lncRNA	lncRNA	lncRNA	0	28	2	4.10113	4.357575000000001	4.61402	0.0226984	0.00947755	0.124921	0.0817766
chr6	167923554	167923649	3035331	0	+	0.284211	(0.28,0.32]	chr6	282832	2	INTRON	INTRON	AFDN	ENSG00000130396.21	ENST00000683244.1:ENST00000351017.9:ENST00000344191.8:ENST00000392112.5:ENST00000392108.7:ENST00000400822.7:ENST00000447894.6:ENST00000366809.6:ENST00000366806.6:ENST00000511637.5:ENST00000485634.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	72	2	2.87382	4.357455	5.84109	0.014868	1.04715e-4	0.0989021	0.00863456
chr1	154232700	154232799	227648	0	+	0.454545	(0.44,0.476]	chr1	26249	36	INTRON	INTRON	UBAP2L	ENSG00000143569.19	ENST00000343815.10:ENST00000271877.11:ENST00000613315.4:ENST00000441890.5:ENST00000412596.5:ENST00000368504.5:ENST00000428931.6:ENST00000437652.5:ENST00000456325.5:ENST00000361546.6	protein_coding	protein_coding	protein_coding	protein_coding	2	76	2	2.981	4.357415	5.73383	9.31193e-4	1.70474e-4	0.0278746	0.0119761
chr8	98693179	98693279	3998831	0	-	0.46	(0.44,0.476]	chr8	366070	416	INTRON	INTRON	STK3	ENSG00000104375.17	ENST00000617590.1:ENST00000419617.7:ENST00000523601.5:ENST00000518165.5:ENST00000521649.5:ENST00000424861.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	62	2	2.9195	4.357395	5.79529	0.0102021	3.3977e-5	0.0850389	0.0046443
chr16	23561740	23561832	6323098	0	+	0.402174	(0.378,0.408]	chr16	605547	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	UBFD1	ENSG00000103353.16	ENST00000567212.5:ENST00000395878.8:ENST00000571064.5:ENST00000563366.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	28	2	4.10661	4.35716	4.60771	0.0399023	0.00567576	0.143072	0.0678837
chr2	200862262	200862362	1310092	0	-	0.39	(0.378,0.408]	chr2	137049	4	SS3_PROX	SS3_PROX:INTRON	CLK1	ENSG00000013441.17	ENST00000321356.9:ENST00000473565.5:ENST00000432425.5:ENST00000409403.6:ENST00000434813.3:ENST00000492793.1:ENST00000481641.1:ENST00000482590.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	28	2	4.10661	4.35716	4.60771	0.0399023	0.00567576	0.143072	0.0678837
chr7	29681377	29681477	3511774	0	-	0.4	(0.378,0.408]	chr7	327367	297	INTRON	INTRON	ZNRF2P2	ENSG00000225264.3	ENST00000442865.1:ENST00000426767.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	0	28	2	4.10661	4.35716	4.60771	0.0399023	0.00567576	0.143072	0.0678837
chr7	87047730	87047830	3565312	0	-	0.4	(0.378,0.408]	chr7	332199	819	INTRON	INTRON	ELAPOR2	ENSG00000164659.15	ENST00000450689.7:ENST00000444627.5:ENST00000423294.5	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.10661	4.35716	4.60771	0.0399023	0.00567576	0.143072	0.0678837
chr8	65619185	65619284	3959562	0	-	0.40404	(0.378,0.408]	chr8	363270	54	INTRON	INTRON	ARMC1	ENSG00000104442.10	ENST00000276569.8:ENST00000458464.3:ENST00000528721.5:ENST00000518908.5:ENST00000523384.1:ENST00000519352.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	28	2	4.10661	4.35716	4.60771	0.0399023	0.00567576	0.143072	0.0678837
chr8	129922512	129922612	4062989	0	-	0.39	(0.378,0.408]	chr8	369828	96	INTRON	INTRON	CYRIB	ENSG00000153310.21	ENST00000694912.1:ENST00000519824.6:ENST00000523288.5:ENST00000519110.5:ENST00000401979.6:ENST00000523509.5:ENST00000522746.5:ENST00000517654.5:ENST00000522250.5:ENST00000519540.5:ENST00000522941.5:ENST00000519142.5:ENST00000518879.5:ENST00000522702.5:ENST00000521223.5:ENST00000520204.5:ENST00000518283.5:ENST00000523993.5:ENST00000520254.5:ENST00000519020.5:ENST00000518167.5:ENST00000517672.5:ENST00000519070.5:ENST00000522361.1:ENST00000518344.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	28	2	4.10661	4.35716	4.60771	0.0399023	0.00567576	0.143072	0.0678837
chr11	62808965	62809065	4961488	0	-	0.47	(0.44,0.476]	chr11	466976	9	INTRON	INTRON	STX5	ENSG00000162236.13	ENST00000294179.8:ENST00000377897.8:ENST00000394690.5:ENST00000492066.5:ENST00000491231.5:ENST00000677401.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	28	2	4.01038	4.356965	4.70355	0.0433743	0.00383786	0.148082	0.0562562
chr2	20323390	20323489	1076506	0	-	0.444444	(0.44,0.476]	chr2	115021	44	INTRON	INTRON	PUM2	ENSG00000055917.16	ENST00000338086.9:ENST00000361078.7:ENST00000442400.5:ENST00000420234.5:ENST00000429419.6:ENST00000432105.5:ENST00000446940.5:ENST00000424110.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	28	2	4.01038	4.356965	4.70355	0.0433743	0.00383786	0.148082	0.0562562
chr2	113238630	113238730	853078	0	+	0.46	(0.44,0.476]	chr2	95731	12	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PAX8-AS1	ENSG00000189223.15	ENST00000456685.5:ENST00000556070.6:ENST00000623306.3:ENST00000451179.6:ENST00000653055.1:ENST00000437551.6:ENST00000665814.1:ENST00000669027.1:ENST00000617509.4:ENST00000616073.5:ENST00000422956.6:ENST00000661674.1:ENST00000617278.2:ENST00000654203.1:ENST00000663248.1:ENST00000333145.9:ENST00000665717.1:ENST00000624706.3:ENST00000445745.6:ENST00000436293.6:ENST00000661255.1:ENST00000555766.1:ENST00000613966.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	0	28	2	4.01038	4.356965	4.70355	0.0433743	0.00383786	0.148082	0.0562562
chr1	220018146	220018246	638897	0	-	0.28	[0,0.28]	chr1	75268	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	EPRS1	ENSG00000136628.18	ENST00000366923.8:ENST00000609181.5:ENST00000477030.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	98	2	3.16031	4.356935	5.55356	0.00278704	6.84313e-4	0.0469265	0.0238224
chr8	21986091	21986191	3711599	0	+	0.34	(0.32,0.35]	chr8	344473	4	SS5_PROX	SS5_PROX:INTRON	XPO7	ENSG00000130227.17	ENST00000252512.14:ENST00000433566.8	protein_coding	protein_coding	protein_coding	protein_coding	1	68	2	3.27858	4.35659	5.4346	0.00368368	4.09682e-4	0.0535094	0.0181306
chr7	11088215	11088315	3283755	0	+	0.24	[0,0.28]	chr7	304989	253	INTRON	INTRON	PHF14	ENSG00000106443.17	ENST00000642461.1:ENST00000634607.2:ENST00000403050.7:ENST00000521747.5:ENST00000423760.6:ENST00000481418.5:ENST00000470665.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	98	2	2.45042	4.356565	6.26271	0.010819	2.29235e-4	0.0920575	0.0138892
chr16	72603491	72603591	6518700	0	-	0.54	(0.515,0.57]	chr16	631372	326	INTRON	INTRON	LINC01572	ENSG00000261008.8	ENST00000624829.4:ENST00000561611.2:ENST00000656218.1:ENST00000666555.2:ENST00000664155.1:ENST00000657725.1:ENST00000563770.5:ENST00000668081.1:ENST00000570152.2:ENST00000662171.1:ENST00000691892.1:ENST00000659470.1:ENST00000655530.1:ENST00000570035.5:ENST00000563823.6	lncRNA	lncRNA	lncRNA	lncRNA	1	55	2	3.40388	4.3565450000000006	5.30921	0.00142538	1.98811e-4	0.0340865	0.0122787
chr11	66087816	66087916	4808044	0	+	0.39	(0.378,0.408]	chr11	447334	32	INTRON	INTRON	PACS1	ENSG00000175115.13	ENST00000320580.9:ENST00000527224.1:ENST00000533756.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	28	2	4.21226	4.35641	4.50056	0.0177403	0.015974	0.11319	0.101453
chr15	72554275	72554374	6059963	0	+	0.393939	(0.378,0.408]	chr15	576870	90	INTRON	INTRON	ARIH1	ENSG00000166233.15	ENST00000379887.9:ENST00000570085.5:ENST00000564062.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	28	2	4.21226	4.35641	4.50056	0.0177403	0.015974	0.11319	0.101453
chr19	24062643	24062739	7044154	0	+	0.385417	(0.378,0.408]	chr19	702365	16	INTRON	INTRON	ENSG00000268362:ZNF254	ENSG00000268362.6:ENSG00000213096.11	ENST00000664647.1:ENST00000613065.4:ENST00000666101.1:ENST00000653003.1:ENST00000666488.1:ENST00000594934.6:ENST00000654353.1:ENST00000662140.1:ENST00000668060.1:ENST00000660137.1:ENST00000652968.1:ENST00000670905.1:ENST00000658858.1:ENST00000654594.1:ENST00000654372.1:ENST00000652837.1:ENST00000654611.1:ENST00000597683.1:ENST00000671141.1:ENST00000653308.1:ENST00000661386.1:ENST00000668656.1:ENST00000663903.1:ENST00000668169.1:ENST00000663458.1:ENST00000662903.1:ENST00000665638.1:ENST00000668701.1:ENST00000655664.1:ENST00000666861.1:ENST00000664627.1:ENST00000661650.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	0	28	2	4.21226	4.35641	4.50056	0.0177403	0.015974	0.11319	0.101453
chr22	42560665	42560765	7526905	0	+	0.38	(0.378,0.408]	chr22	769541	4	SS5_PROX	SS5_PROX:INTRON	SERHL2	ENSG00000183569.18	ENST00000477564.5:ENST00000340239.8:ENST00000534080.5:ENST00000416156.6:ENST00000527167.5:ENST00000327678.10:ENST00000407614.8:ENST00000335879.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	28	2	4.21226	4.35641	4.50056	0.0177403	0.015974	0.11319	0.101453
chr3	131006523	131006622	1504080	0	+	0.393939	(0.378,0.408]	chr3	157362	35	INTRON	INTRON	ATP2C1	ENSG00000017260.20	ENST00000504381.5:ENST00000507488.6:ENST00000533801.6:ENST00000513801.5:ENST00000328560.12:ENST00000422190.6:ENST00000359644.7:ENST00000504612.5	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.21226	4.35641	4.50056	0.0177403	0.015974	0.11319	0.101453
chr7	102196433	102196533	3370173	0	+	0.39	(0.378,0.408]	chr7	315311	4	SS3_PROX	SS3_PROX:INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000560541.5:ENST00000558836.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	28	2	4.21226	4.35641	4.50056	0.0177403	0.015974	0.11319	0.101453
chr17	3822294	3822375	6707960	0	-	0.345679	(0.32,0.35]	chr17	656996	4	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	NCBP3	ENSG00000074356.17	ENST00000389005.6:ENST00000574911.5:ENST00000575815.5:ENST00000574379.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	85	2	2.6297	4.356295	6.08289	0.00476699	1.06767e-4	0.0636201	0.00924854
chr1	9761299	9761399	374818	0	-	0.53	(0.515,0.57]	chr1	43781	44	INTRON	INTRON	CLSTN1	ENSG00000171603.18	ENST00000377298.9:ENST00000650348.1:ENST00000361311.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	26	2	4.31326	4.35613	4.399	0.0141817	0.00708863	0.0959618	0.0754923
chr16	15680629	15680728	6307193	0	+	0.525253	(0.515,0.57]	chr16	603439	23	INTRON	INTRON	NDE1	ENSG00000072864.16	ENST00000396355.5:ENST00000674888.1:ENST00000675171.1:ENST00000675951.1:ENST00000674900.1:ENST00000674588.1:ENST00000674538.1:ENST00000396354.6:ENST00000675926.1:ENST00000573203.5:ENST00000674995.1:ENST00000674554.1:ENST00000674581.1:ENST00000577101.6:ENST00000572756.6:ENST00000574163.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	26	2	4.31326	4.35613	4.399	0.0141817	0.00708863	0.0959618	0.0754923
chr17	42373458	42373558	6772877	0	-	0.54	(0.515,0.57]	chr17	667104	246	INTRON	INTRON	STAT3	ENSG00000168610.16	ENST00000264657.10:ENST00000678044.1:ENST00000678906.1:ENST00000678960.1:ENST00000679014.1:ENST00000678043.1:ENST00000677442.1:ENST00000677723.1:ENST00000679166.1:ENST00000678792.1:ENST00000678764.1:ENST00000678048.1:ENST00000678674.1:ENST00000678445.1:ENST00000678913.1:ENST00000677421.1:ENST00000679231.1:ENST00000677030.1:ENST00000678827.1:ENST00000679185.1:ENST00000677820.1:ENST00000678905.1:ENST00000677479.1:ENST00000676636.1:ENST00000678572.1:ENST00000677271.1:ENST00000677152.1:ENST00000677603.1:ENST00000585517.5:ENST00000678535.1:ENST00000677308.1:ENST00000389272.7:ENST00000588969.5:ENST00000677763.1:ENST00000404395.3:ENST00000678659.1:ENST00000678108.1:ENST00000678529.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	26	2	4.31326	4.35613	4.399	0.0141817	0.00708863	0.0959618	0.0754923
chr22	26471801	26471888	7564005	0	-	0.54023	(0.515,0.57]	chr22	773872	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HPS4	ENSG00000100099.21	ENST00000398145.7:ENST00000466781.5:ENST00000439453.5:ENST00000336873.9:ENST00000402105.7:ENST00000464362.5:ENST00000429411.5:ENST00000496385.5:ENST00000485842.5:ENST00000422379.2:ENST00000459918.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	26	2	4.31326	4.35613	4.399	0.0141817	0.00708863	0.0959618	0.0754923
chr3	69922210	69922310	1450209	0	+	0.54	(0.515,0.57]	chr3	152808	425	INTRON	INTRON	MITF	ENSG00000187098.18	ENST00000687384.1:ENST00000693031.1:ENST00000352241.9:ENST00000642352.1:ENST00000429090.5:ENST00000433517.5:ENST00000472437.5:ENST00000448226.9:ENST00000689390.1:ENST00000314589.10:ENST00000451708.5:ENST00000693549.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	26	2	4.31326	4.35613	4.399	0.0141817	0.00708863	0.0959618	0.0754923
chr3	155830203	155830303	1844102	0	-	0.52	(0.515,0.57]	chr3	185540	3	SS3_PROX	SS3_PROX:INTRON	SLC33A1	ENSG00000169359.16	ENST00000643144.2:ENST00000359479.7:ENST00000468581.2:ENST00000646424.1:ENST00000644094.1:ENST00000642438.1:ENST00000644855.1:ENST00000475842.5:ENST00000496772.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	26	2	4.31326	4.35613	4.399	0.0141817	0.00708863	0.0959618	0.0754923
chr5	154874889	154874989	2527851	0	+	0.53	(0.515,0.57]	chr5	241776	2	SS3_PROX	SS3_PROX:INTRON	CNOT8	ENSG00000155508.14	ENST00000523698.5:ENST00000517876.5:ENST00000403027.6:ENST00000521450.5:ENST00000524105.5:ENST00000285896.11:ENST00000521583.5:ENST00000520671.5:ENST00000519404.5:ENST00000521729.5:ENST00000518775.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	26	2	4.31326	4.35613	4.399	0.0141817	0.00708863	0.0959618	0.0754923
chr7	4742318	4742418	3270516	0	+	0.55	(0.515,0.57]	chr7	303890	9	INTRON	INTRON	FOXK1	ENSG00000164916.11	ENST00000328914.5:ENST00000460979.2	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.31326	4.35613	4.399	0.0141817	0.00708863	0.0959618	0.0754923
chr19	38650657	38650757	7065758	0	+	0.45	(0.44,0.476]	chr19	705486	20	INTRON	INTRON	ACTN4	ENSG00000130402.13	ENST00000252699.7:ENST00000588618.5:ENST00000440400.2:ENST00000424234.7:ENST00000589528.1:ENST00000390009.7:ENST00000495553.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	61	2	3.07862	4.356	5.63338	0.0060153	7.86121e-5	0.0674604	0.00738014
chr11	125670732	125670832	4883448	0	+	0.45	(0.44,0.476]	chr11	456613	137	INTRON	INTRON	CHEK1	ENSG00000149554.14	ENST00000428830.6:ENST00000524737.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	28	2	4.1054	4.3559350000000006	4.60647	0.0220205	0.0102339	0.123836	0.0850389
chr15	34332722	34332821	6132467	0	-	0.464646	(0.44,0.476]	chr15	584101	141	INTRON	INTRON	SLC12A6	ENSG00000140199.13	ENST00000354181.8:ENST00000676379.1:ENST00000397702.6:ENST00000559664.5:ENST00000458406.6:ENST00000559523.5:ENST00000397707.6:ENST00000560611.5:ENST00000561080.5:ENST00000558667.5:ENST00000558589.5:ENST00000675289.1:ENST00000561120.5:ENST00000559236.5:ENST00000559484.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	28	2	4.1054	4.3559350000000006	4.60647	0.0220205	0.0102339	0.123836	0.0850389
chr16	14588672	14588769	6449422	0	-	0.453608	(0.44,0.476]	chr16	621296	1	INTRON	INTRON	PARN	ENSG00000140694.17	ENST00000651865.1:ENST00000437198.7:ENST00000651348.1:ENST00000650990.1:ENST00000651760.1:ENST00000652541.1:ENST00000652727.1:ENST00000652066.1:ENST00000651300.1:ENST00000420015.6:ENST00000652051.1:ENST00000341484.11:ENST00000539279.5:ENST00000651049.1:ENST00000650960.1:ENST00000651634.1:ENST00000564113.6:ENST00000652411.1:ENST00000652501.1:ENST00000651027.1:ENST00000651913.1:ENST00000563641.6:ENST00000569444.5:ENST00000651241.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	28	2	4.1054	4.3559350000000006	4.60647	0.0220205	0.0102339	0.123836	0.0850389
chr17	78405887	78405987	6682575	0	+	0.45	(0.44,0.476]	chr17	652826	14	INTRON	INTRON	PGS1	ENSG00000087157.19	ENST00000262764.11:ENST00000589425.5:ENST00000589426.5:ENST00000588169.5:ENST00000585521.2:ENST00000588281.5:ENST00000591996.1:ENST00000586019.1:ENST00000586355.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	28	2	4.1054	4.3559350000000006	4.60647	0.0220205	0.0102339	0.123836	0.0850389
chr2	218239584	218239684	1017127	0	+	0.46	(0.44,0.476]	chr2	108257	1	SS5_PROX	SS5_PROX:INTRON	ARPC2	ENSG00000163466.16	ENST00000315717.10:ENST00000478612.5:ENST00000295685.14:ENST00000470146.5:ENST00000477992.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	28	2	4.1054	4.3559350000000006	4.60647	0.0220205	0.0102339	0.123836	0.0850389
chr20	49125502	49125601	7351743	0	-	0.464646	(0.44,0.476]	chr20	749646	5	INTRON	INTRON	STAU1	ENSG00000124214.21	ENST00000371856.7:ENST00000371828.7:ENST00000340954.11:ENST00000347458.9:ENST00000360426.8:ENST00000371792.5:ENST00000371802.5:ENST00000437404.2	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.1054	4.3559350000000006	4.60647	0.0220205	0.0102339	0.123836	0.0850389
chr6	150874693	150874793	2997946	0	+	0.46	(0.44,0.476]	chr6	280472	77	INTRON	INTRON	MTHFD1L	ENSG00000120254.16	ENST00000611279.4:ENST00000367321.8:ENST00000367307.8:ENST00000367308.8:ENST00000618312.4:ENST00000441122.5:ENST00000423867.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	28	2	4.1054	4.3559350000000006	4.60647	0.0220205	0.0102339	0.123836	0.0850389
chr6	151017674	151017773	2999407	0	+	0.444444	(0.44,0.476]	chr6	280621	16	INTRON	INTRON	MTHFD1L	ENSG00000120254.16	ENST00000611279.4:ENST00000367321.8:ENST00000618312.4:ENST00000420192.1	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.1054	4.3559350000000006	4.60647	0.0220205	0.0102339	0.123836	0.0850389
chr8	38251336	38251431	3735736	0	+	0.442105	(0.44,0.476]	chr8	347139	17	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	DDHD2	ENSG00000085788.14	ENST00000397166.7:ENST00000520272.6:ENST00000532106.1:ENST00000528504.5:ENST00000517385.5:ENST00000529845.5:ENST00000520176.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	28	2	4.1054	4.3559350000000006	4.60647	0.0220205	0.0102339	0.123836	0.0850389
chr2	187542809	187542909	1289409	0	-	0.45	(0.44,0.476]	chr2	135621	130	INTRON	INTRON	TFPI	ENSG00000003436.16	ENST00000233156.9:ENST00000409676.5:ENST00000339091.8:ENST00000421427.5:ENST00000437725.5:ENST00000453013.5:ENST00000417013.5:ENST00000420747.1	protein_coding	protein_coding	protein_coding	protein_coding	1	61	2	3.31011	4.355815	5.40152	0.00259023	2.39829e-4	0.0452934	0.0136403
chr1	175952728	175952828	589147	0	-	0.45	(0.44,0.476]	chr1	70870	51	INTRON	INTRON	COP1	ENSG00000143207.21	ENST00000367669.8:ENST00000367667.5:ENST00000461830.6:ENST00000367666.5:ENST00000649803.1:ENST00000308769.12	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	57	2	3.3111	4.35555	5.4	0.0020006	7.02611e-4	0.0412555	0.024224
chr16	85688508	85688608	6534306	0	-	0.49	(0.476,0.515]	chr16	633185	3	SS5_PROX	SS5_PROX:INTRON	GINS2	ENSG00000131153.9	ENST00000253462.8:ENST00000596233.1	protein_coding	protein_coding	protein_coding	protein_coding	1	57	2	3.35059	4.35527	5.35995	0.00171515	7.54256e-4	0.0381936	0.0251179
chr21	46274685	46274785	7471315	0	-	0.55	(0.515,0.57]	chr21	761678	1	SS5_PROX	SS5_PROX:INTRON	MCM3AP	ENSG00000160294.11	ENST00000397708.1:ENST00000291688.6	protein_coding	protein_coding	protein_coding	protein_coding	1	56	2	3.58064	4.35519	5.12974	6.54693e-4	4.54392e-4	0.0233335	0.0192381
chr3	38372254	38372354	1399739	0	+	0.38	(0.378,0.408]	chr3	146825	2	SS3_PROX	SS3_PROX:INTRON	XYLB	ENSG00000093217.11	ENST00000207870.8:ENST00000650590.1:ENST00000424034.5:ENST00000649234.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	61	2	2.92665	4.35519	5.78373	0.0086017	1.89312e-4	0.083729	0.012565
chr7	152828810	152828909	3451219	0	+	0.535354	(0.515,0.57]	chr7	322567	33	INTRON	INTRON	ACTR3B	ENSG00000133627.18	ENST00000377776.7:ENST00000256001.13:ENST00000397282.2:ENST00000479402.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	56	2	3.58064	4.35519	5.12974	6.54693e-4	4.54392e-4	0.0233335	0.0192381
chr12	102164137	102164237	5205307	0	+	0.42	(0.408,0.44]	chr12	492840	3	SS3_PROX	SS3_PROX:INTRON	PARPBP	ENSG00000185480.12	ENST00000327680.7:ENST00000541394.5:ENST00000543784.5:ENST00000392911.6:ENST00000457614.6:ENST00000417507.6:ENST00000412715.3:ENST00000535811.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	57	2	3.41323	4.354675	5.29612	0.00129989	0.00113523	0.0333764	0.0307488
chr19	10762003	10762102	7014211	0	+	0.454545	(0.44,0.476]	chr19	696931	18	INTRON	INTRON	DNM2	ENSG00000079805.19	ENST00000683738.1:ENST00000682285.1:ENST00000682524.1:ENST00000355667.11:ENST00000389253.9:ENST00000585892.5:ENST00000359692.10:ENST00000408974.8:ENST00000586939.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	63	2	2.80275	4.354285	5.90582	0.0146513	1.86259e-5	0.0982604	0.00329969
chr3	172051640	172051740	1559664	0	+	0.39	(0.378,0.408]	chr3	161527	43	INTRON	INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000421757.5:ENST00000469491.5:ENST00000336824.8:ENST00000423424.5:ENST00000416957.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	78	2	3.15415	4.354015	5.55388	5.01023e-4	4.11608e-4	0.0206993	0.0181365
chr19	12550829	12550909	7139953	0	-	0.4	(0.378,0.408]	chr19	720346	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ZNF564	ENSG00000249709.8	ENST00000339282.12:ENST00000427105.1:ENST00000596193.1:ENST00000416136.1:ENST00000465410.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	93	2	2.63629	4.35399	6.07169	0.001315	4.98726e-5	0.0333932	0.00611327
chr22	24608614	24608706	7488912	0	+	0.434783	(0.408,0.44]	chr22	764128	2	SS3_PROX	SS3_PROX:INTRON	ENSG00000286070	ENSG00000286070.2	ENST00000652248.1:ENST00000404603.5:ENST00000439775.1:ENST00000651180.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	0	28	2	4.00385	4.353975	4.7041	0.0454568	0.00381677	0.149888	0.0562562
chr13	19127014	19127114	5451818	0	+	0.4	(0.378,0.408]	chr13	522299	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	CENPIP1	ENSG00000224778.1	ENST00000425713.1	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	1	58	2	3.33026	4.3538250000000005	5.37739	0.00189824	0.0010014	0.0402736	0.0288906
chr17	27554178	27554277	6581746	0	+	0.40404	(0.378,0.408]	chr17	639672	31	INTRON	INTRON	KSR1	ENSG00000141068.15	ENST00000644974.2:ENST00000583370.5:ENST00000398988.7:ENST00000268763.10:ENST00000509603.6:ENST00000582311.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	58	2	3.33026	4.3538250000000005	5.37739	0.00189824	0.0010014	0.0402736	0.0288906
chr15	85025320	85025420	6089365	0	+	0.48	(0.476,0.515]	chr15	579504	426	INTRON	INTRON	PDE8A	ENSG00000073417.15	ENST00000310298.8:ENST00000557957.5:ENST00000394553.6:ENST00000339708.9:ENST00000478717.5:ENST00000485596.5:ENST00000559742.5:ENST00000559086.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	57	2	3.44784	4.353645	5.25945	0.00113238	0.00111445	0.0308465	0.0306328
chr22	26542218	26542315	7564583	0	-	0.494845	(0.476,0.515]	chr22	774022	1	INTRON	INTRON	TPST2	ENSG00000128294.16	ENST00000338754.9:ENST00000403880.5:ENST00000398110.6:ENST00000442495.5:ENST00000454778.5:ENST00000440953.5:ENST00000453117.1:ENST00000450022.1	protein_coding	protein_coding	protein_coding	protein_coding	1	57	2	3.29939	4.35354	5.40769	0.00211868	6.23078e-4	0.0425644	0.0229151
chr17	30515274	30515373	6589447	0	+	0.343434	(0.32,0.35]	chr17	640823	40	INTRON	INTRON	GOSR1	ENSG00000108587.16	ENST00000225724.9:ENST00000451249.7:ENST00000427274.6:ENST00000467337.6:ENST00000581721.5:ENST00000414833.2:ENST00000494918.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	64	2	3.68775	4.35346	5.01917	0.0055659	4.66127e-4	0.0648867	0.0195589
chr3	33413525	33413624	1651441	0	-	0.343434	(0.32,0.35]	chr3	169382	3	INTRON	INTRON	UBP1	ENSG00000153560.12	ENST00000283629.8:ENST00000447368.6:ENST00000283628.9:ENST00000481761.1:ENST00000456378.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	64	2	3.68775	4.35346	5.01917	0.0055659	4.66127e-4	0.0648867	0.0195589
chr19	43590035	43590135	7187457	0	-	0.5	(0.476,0.515]	chr19	727431	58	UTR3	UTR3:EXON_MRNA:INTRON	IRGQ	ENSG00000167378.10	ENST00000422989.6:ENST00000602269.2:ENST00000601520.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	77	2	2.72507	4.353175	5.98128	0.0029369	4.70386e-5	0.0496505	0.00593131
chr7	129303116	129303216	3410253	0	+	0.49	(0.476,0.515]	chr7	318776	773	INTRON	INTRON	AHCYL2	ENSG00000158467.17	ENST00000325006.8:ENST00000446544.6	protein_coding	protein_coding	protein_coding	protein_coding	2	76	2	3.04097	4.35301	5.66505	7.0601e-4	2.08835e-4	0.0241881	0.0131276
chr10	133290453	133290549	4717481	0	-	0.416667	(0.408,0.44]	chr10	435460	6	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	TUBGCP2	ENSG00000130640.15	ENST00000252936.8:ENST00000682123.1:ENST00000683612.1:ENST00000683786.1:ENST00000682515.1:ENST00000682905.1:ENST00000682256.1:ENST00000684478.1:ENST00000682161.1:ENST00000682332.1:ENST00000684487.1:ENST00000683673.1:ENST00000682093.1:ENST00000683014.1:ENST00000682631.1:ENST00000683829.1:ENST00000683308.1:ENST00000683060.1:ENST00000683383.1:ENST00000682990.1:ENST00000417178.7:ENST00000368562.5:ENST00000482278.5:ENST00000543663.6:ENST00000682712.1:ENST00000683704.1:ENST00000683552.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	28	2	4.10594	4.3528649999999995	4.59979	0.0219367	0.0109537	0.123836	0.0873034
chr13	32645055	32645155	5465894	0	+	0.44	(0.408,0.44]	chr13	523717	581	INTRON	INTRON	PDS5B	ENSG00000083642.19	ENST00000315596.15:ENST00000482955.5:ENST00000498550.5:ENST00000450460.5:ENST00000493653.1:ENST00000466078.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	28	2	4.10594	4.3528649999999995	4.59979	0.0219367	0.0109537	0.123836	0.0873034
chr17	81697672	81697768	6691182	0	+	0.4375	(0.408,0.44]	chr17	654121	8	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	HGS	ENSG00000185359.14	ENST00000677161.1:ENST00000678096.1:ENST00000679191.1:ENST00000676546.1:ENST00000678387.1:ENST00000677109.1:ENST00000677484.1:ENST00000678115.1:ENST00000677243.1:ENST00000677044.1:ENST00000679336.1:ENST00000678196.1:ENST00000676462.1:ENST00000678105.1:ENST00000676478.1:ENST00000329138.9:ENST00000677225.1:ENST00000678866.1:ENST00000679275.1:ENST00000678541.1:ENST00000676729.1:ENST00000678658.1:ENST00000677159.1:ENST00000571647.1:ENST00000573949.1:ENST00000677188.1:ENST00000676704.1:ENST00000570355.1:ENST00000678896.1:ENST00000679036.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	28	2	4.10594	4.3528649999999995	4.59979	0.0219367	0.0109537	0.123836	0.0873034
chr2	241410732	241410832	1054577	0	+	0.42	(0.408,0.44]	chr2	112330	3	SS3_PROX	SS3_PROX:INTRON	FARP2	ENSG00000006607.14	ENST00000264042.8:ENST00000627550.2:ENST00000373287.8	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.10594	4.3528649999999995	4.59979	0.0219367	0.0109537	0.123836	0.0873034
chr21	29385402	29385502	7393233	0	+	0.41	(0.408,0.44]	chr21	753248	118	INTRON	INTRON	BACH1	ENSG00000156273.16	ENST00000422809.5:ENST00000468059.1	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.10594	4.3528649999999995	4.59979	0.0219367	0.0109537	0.123836	0.0873034
chr21	43885508	43885607	7413993	0	+	0.434343	(0.408,0.44]	chr21	755692	25	INTRON	INTRON	AGPAT3	ENSG00000160216.21	ENST00000291572.13:ENST00000448287.5:ENST00000398061.5	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.10594	4.3528649999999995	4.59979	0.0219367	0.0109537	0.123836	0.0873034
chr21	44797790	44797890	7468691	0	-	0.44	(0.408,0.44]	chr21	761177	93	INTRON	INTRON	UBE2G2	ENSG00000184787.19	ENST00000345496.7:ENST00000497630.5:ENST00000477954.5:ENST00000491513.5:ENST00000330942.9:ENST00000478200.1:ENST00000497664.5:ENST00000462569.5:ENST00000490450.5:ENST00000496395.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	28	2	4.10594	4.3528649999999995	4.59979	0.0219367	0.0109537	0.123836	0.0873034
chr3	184135951	184136051	1581488	0	+	0.41	(0.408,0.44]	chr3	163202	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	EIF2B5	ENSG00000145191.15	ENST00000491144.5:ENST00000649814.1:ENST00000471832.2:ENST00000648915.2:ENST00000648314.1:ENST00000465218.3:ENST00000432569.2:ENST00000647636.1:ENST00000648890.1:ENST00000648682.1:ENST00000647909.1:ENST00000649688.1:ENST00000648599.1:ENST00000481054.5:ENST00000648882.1:ENST00000492226.2:ENST00000648630.1:ENST00000432982.5:ENST00000468748.7:ENST00000648256.1:ENST00000650244.1:ENST00000650270.1:ENST00000491008.6:ENST00000498831.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	28	2	4.10594	4.3528649999999995	4.59979	0.0219367	0.0109537	0.123836	0.0873034
chr5	119283999	119284099	2461750	0	+	0.44	(0.408,0.44]	chr5	235842	147	INTRON	INTRON	TNFAIP8	ENSG00000145779.8	ENST00000274456.6:ENST00000388882.5	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.10594	4.3528649999999995	4.59979	0.0219367	0.0109537	0.123836	0.0873034
chr20	35776451	35776551	7262927	0	+	0.33	(0.32,0.35]	chr20	738054	15	INTRON	INTRON	PHF20	ENSG00000025293.17	ENST00000461122.5:ENST00000461405.1:ENST00000374012.8:ENST00000452270.5:ENST00000374000.8:ENST00000339089.10:ENST00000481202.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	62	2	3.3273	4.352815	5.37833	0.00218894	0.00174321	0.0435144	0.0375363
chr10	72713374	72713469	4450300	0	+	0.515789	(0.515,0.57]	chr10	410738	6	INTRON	INTRON	MCU	ENSG00000156026.15	ENST00000373053.8:ENST00000357157.10:ENST00000604679.5:ENST00000604372.5:ENST00000603649.5:ENST00000605597.5:ENST00000536019.5:ENST00000604152.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	26	2	4.20381	4.352415	4.50102	0.0189208	0.00510768	0.108861	0.0646039
chr12	31967605	31967704	5106685	0	+	0.545455	(0.515,0.57]	chr12	482327	47	INTRON	INTRON	RESF1	ENSG00000174718.12	ENST00000541981.5:ENST00000540924.5:ENST00000312561.9:ENST00000535596.5:ENST00000397578.7:ENST00000535606.1:ENST00000381054.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	26	2	4.20381	4.352415	4.50102	0.0189208	0.00510768	0.108861	0.0646039
chr17	38804724	38804822	6764855	0	-	0.530612	(0.515,0.57]	chr17	665334	15	INTRON	INTRON	CWC25	ENSG00000273559.5	ENST00000614790.5:ENST00000619299.4:ENST00000618122.4:ENST00000619462.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	26	2	4.20381	4.352415	4.50102	0.0189208	0.00510768	0.108861	0.0646039
chr17	61860496	61860586	6808912	0	-	0.533333	(0.515,0.57]	chr17	672636	2	INTRON	INTRON	BRIP1	ENSG00000136492.10	ENST00000259008.7:ENST00000682755.1:ENST00000682453.1:ENST00000683039.1:ENST00000682989.1:ENST00000682589.1:ENST00000683235.1:ENST00000682477.1:ENST00000577598.5:ENST00000584322.2:ENST00000683381.1:ENST00000577913.2:ENST00000682369.1:ENST00000683672.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	26	2	4.20381	4.352415	4.50102	0.0189208	0.00510768	0.108861	0.0646039
chr2	62890068	62890168	794155	0	+	0.52	(0.515,0.57]	chr2	88806	84	INTRON	INTRON	EHBP1	ENSG00000115504.15	ENST00000405015.7:ENST00000431489.6:ENST00000263991.9:ENST00000405289.5	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.20381	4.352415	4.50102	0.0189208	0.00510768	0.108861	0.0646039
chr3	15226245	15226344	1373072	0	+	0.545455	(0.515,0.57]	chr3	144741	23	INTRON	INTRON	CAPN7	ENSG00000131375.10	ENST00000253693.7	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.20381	4.352415	4.50102	0.0189208	0.00510768	0.108861	0.0646039
chr7	157365031	157365128	3455584	0	+	0.556701	(0.515,0.57]	chr7	323065	14	INTRON	INTRON	DNAJB6	ENSG00000105993.15	ENST00000441561.5:ENST00000429029.6:ENST00000262177.9:ENST00000486083.6:ENST00000417758.5:ENST00000459889.5:ENST00000443280.5:ENST00000488001.5:ENST00000441291.5:ENST00000437030.5:ENST00000412557.5:ENST00000453383.5:ENST00000634080.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	26	2	4.20381	4.352415	4.50102	0.0189208	0.00510768	0.108861	0.0646039
chr9	98809168	98809268	4173666	0	+	0.55	(0.515,0.57]	chr9	380354	7	INTRON	INTRON	GALNT12	ENSG00000119514.7	ENST00000375011.4:ENST00000610463.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	26	2	4.20381	4.352415	4.50102	0.0189208	0.00510768	0.108861	0.0646039
chr1	65313135	65313235	136126	0	+	0.47	(0.44,0.476]	chr1	15352	28	INTRON	INTRON	DNAJC6	ENSG00000116675.16	ENST00000463018.5:ENST00000494710.6:ENST00000263441.11:ENST00000395325.7:ENST00000483402.1:ENST00000371069.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	116	2	2.22991	4.352375	6.47484	0.00208483	3.88959e-6	0.0424672	0.00142343
chr1	229341698	229341798	652603	0	-	0.46	(0.44,0.476]	chr1	77254	2	SS5_PROX	SS5_PROX:INTRON	CCSAP	ENSG00000154429.11	ENST00000366687.5:ENST00000284617.7:ENST00000483092.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	58	2	3.67739	4.3522099999999995	5.02703	0.00278015	3.8961e-4	0.0469265	0.0177751
chr19	16090747	16090847	7026121	0	+	0.33	(0.32,0.35]	chr19	699207	12	INTRON	INTRON	TPM4	ENSG00000167460.17	ENST00000646974.2:ENST00000586499.6:ENST00000647464.2:ENST00000668959.1:ENST00000590180.3:ENST00000655004.1:ENST00000642789.1:ENST00000653979.1:ENST00000645471.1:ENST00000659595.1:ENST00000647037.1:ENST00000587201.6:ENST00000643579.2:ENST00000586193.6:ENST00000643494.1:ENST00000670382.1:ENST00000300933.9:ENST00000646575.1:ENST00000586833.7:ENST00000642221.1:ENST00000658224.1:ENST00000344824.11:ENST00000588410.2:ENST00000657915.1:ENST00000588483.2:ENST00000664983.1:ENST00000663894.1:ENST00000588032.6:ENST00000653961.1:ENST00000591645.3:ENST00000658489.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	62	2	3.3721	4.35214	5.33218	0.00204346	0.00182912	0.04086	0.0396683
chr16	58567136	58567236	6495735	0	-	0.39	(0.378,0.408]	chr16	628558	64	INTRON	INTRON	CNOT1	ENSG00000125107.19	ENST00000317147.10:ENST00000569240.5:ENST00000567188.5:ENST00000441024.6:ENST00000569882.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	60	2	3.76175	4.352125	4.9425	0.00452675	2.68579e-4	0.0595107	0.0145349
chr10	50330314	50330414	4617741	0	-	0.53	(0.515,0.57]	chr10	425400	26	INTRON	INTRON	SGMS1	ENSG00000198964.14	ENST00000429490.5:ENST00000361781.7:ENST00000602619.1:ENST00000361543.3:ENST00000626236.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	26	2	4.28921	4.352095	4.41498	0.0106866	0.00990051	0.0877296	0.0861859
chr11	62597021	62597118	4959842	0	-	0.546392	(0.515,0.57]	chr11	466359	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MTA2	ENSG00000149480.7	ENST00000278823.7:ENST00000524902.5:ENST00000527204.5:ENST00000531261.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	26	2	4.28921	4.352095	4.41498	0.0106866	0.00990051	0.0877296	0.0861859
chr12	112057810	112057908	5414900	0	-	0.530612	(0.515,0.57]	chr12	517177	29	INTRON	INTRON	NAA25	ENSG00000111300.10	ENST00000261745.9:ENST00000552527.5:ENST00000549711.5:ENST00000551858.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	26	2	4.28921	4.352095	4.41498	0.0106866	0.00990051	0.0877296	0.0861859
chr18	21099742	21099842	6954262	0	-	0.56	(0.515,0.57]	chr18	687952	288	INTRON	INTRON	ROCK1	ENSG00000067900.8	ENST00000399799.3:ENST00000635540.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	26	2	4.28921	4.352095	4.41498	0.0106866	0.00990051	0.0877296	0.0861859
chr2	208287430	208287529	992217	0	+	0.535354	(0.515,0.57]	chr2	106624	11	INTRON	INTRON	PIKFYVE	ENSG00000115020.17	ENST00000264380.9:ENST00000443896.5:ENST00000392202.7:ENST00000407449.5:ENST00000308862.10:ENST00000452564.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	26	2	4.28921	4.352095	4.41498	0.0106866	0.00990051	0.0877296	0.0861859
chr21	43069115	43069213	7468100	0	-	0.55102	(0.515,0.57]	chr21	761072	1	INTRON	INTRON	CBS	ENSG00000160200.18	ENST00000352178.9:ENST00000359624.7:ENST00000398165.8:ENST00000398158.5:ENST00000441030.5:ENST00000470912.5:ENST00000465732.5:ENST00000488526.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	26	2	4.28921	4.352095	4.41498	0.0106866	0.00990051	0.0877296	0.0861859
chr3	46949637	46949736	1679759	0	-	0.535354	(0.515,0.57]	chr3	171431	82	INTRON	INTRON	CCDC12	ENSG00000160799.12	ENST00000425441.5:ENST00000683445.1:ENST00000292314.6:ENST00000605358.5:ENST00000488069.5:ENST00000603885.5:ENST00000446836.5:ENST00000494655.5:ENST00000604164.5:ENST00000604181.1:ENST00000605875.1:ENST00000460035.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	26	2	4.28921	4.352095	4.41498	0.0106866	0.00990051	0.0877296	0.0861859
chr7	50711887	50711987	3531854	0	-	0.52	(0.515,0.57]	chr7	329479	5	INTRON	INTRON	GRB10	ENSG00000106070.20	ENST00000335866.7:ENST00000398812.6:ENST00000401949.6:ENST00000402578.5:ENST00000644769.1:ENST00000403097.6:ENST00000644879.1:ENST00000406641.5:ENST00000402497.6:ENST00000357271.9:ENST00000643299.1:ENST00000407526.6:ENST00000645075.2:ENST00000439044.7:ENST00000644716.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	26	2	4.28921	4.352095	4.41498	0.0106866	0.00990051	0.0877296	0.0861859
chr7	50759302	50759400	3532338	0	-	0.530612	(0.515,0.57]	chr7	329519	29	INTRON	INTRON	GRB10	ENSG00000106070.20	ENST00000335866.7:ENST00000401949.6:ENST00000644769.1:ENST00000644879.1:ENST00000402497.6:ENST00000407526.6:ENST00000645075.2:ENST00000439044.7:ENST00000644716.1:ENST00000483819.1:ENST00000470992.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	26	2	4.28921	4.352095	4.41498	0.0106866	0.00990051	0.0877296	0.0861859
chr7	138482995	138483095	3434868	0	+	0.53	(0.515,0.57]	chr7	319959	213	INTRON	INTRON	TRIM24	ENSG00000122779.18	ENST00000343526.9:ENST00000415680.6:ENST00000497516.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	26	2	4.28921	4.352095	4.41498	0.0106866	0.00990051	0.0877296	0.0861859
chrX	101348194	101348290	7855738	0	-	0.552083	(0.515,0.57]	chrX	800848	17	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	TIMM8A	ENSG00000126953.8	ENST00000372902.4:ENST00000644112.2:ENST00000645279.1:ENST00000647480.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	26	2	4.28921	4.352095	4.41498	0.0106866	0.00990051	0.0877296	0.0861859
chr14	103388880	103388979	5825653	0	+	0.323232	(0.32,0.35]	chr14	552777	21	INTRON	INTRON	MARK3	ENSG00000075413.19	ENST00000678179.1:ENST00000676838.1:ENST00000677348.1:ENST00000677404.1:ENST00000676694.1:ENST00000676938.1:ENST00000678619.1:ENST00000676897.1:ENST00000677214.1:ENST00000677942.1:ENST00000676830.1:ENST00000678999.1:ENST00000677228.1:ENST00000556744.2:ENST00000677104.1:ENST00000679330.1:ENST00000560417.6:ENST00000440884.7:ENST00000676475.1:ENST00000677035.1:ENST00000678022.1:ENST00000677560.1:ENST00000561314.6:ENST00000429436.7:ENST00000677118.1:ENST00000676564.1:ENST00000678169.1:ENST00000678175.1:ENST00000678897.1:ENST00000678278.1:ENST00000676645.1:ENST00000677829.1:ENST00000678302.1:ENST00000677133.1:ENST00000561164.2:ENST00000558223.6:ENST00000559328.6:ENST00000678207.1:ENST00000677360.1:ENST00000676905.1:ENST00000678343.1:ENST00000677347.1:ENST00000678071.1:ENST00000677432.1:ENST00000678237.1:ENST00000677604.1:ENST00000676518.1:ENST00000677051.1:ENST00000677857.1:ENST00000677869.1:ENST00000678423.1:ENST00000560603.6:ENST00000416682.6:ENST00000303622.13:ENST00000216288.11:ENST00000679105.1:ENST00000553942.5:ENST00000335102.9:ENST00000561225.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	29	2	4.06299	4.351725	4.64046	0.0559439	0.00724767	0.165463	0.0756327
chr14	105285695	105285795	5974201	0	-	0.33	(0.32,0.35]	chr14	568047	125	INTRON	INTRON	BRF1	ENSG00000185024.18	ENST00000547530.7:ENST00000379937.6:ENST00000619151.4:ENST00000327359.7:ENST00000440513.7:ENST00000546417.5:ENST00000550692.1:ENST00000548421.2	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	4.06299	4.351725	4.64046	0.0559439	0.00724767	0.165463	0.0756327
chr18	36133616	36133716	6891452	0	+	0.34	(0.32,0.35]	chr18	682957	3	SS5_PROX	SS5_PROX:INTRON	ELP2	ENSG00000134759.14	ENST00000543127.5:ENST00000544267.5:ENST00000351393.10:ENST00000541190.5:ENST00000545632.5:ENST00000442325.6:ENST00000358232.11:ENST00000423854.6:ENST00000539560.5:ENST00000535488.5:ENST00000540135.5:ENST00000542430.5:ENST00000350494.10:ENST00000542824.5:ENST00000540799.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	29	2	4.06299	4.351725	4.64046	0.0559439	0.00724767	0.165463	0.0756327
chr5	135381928	135382028	2728745	0	-	0.33	(0.32,0.35]	chr5	256825	114	INTRON	INTRON	MACROH2A1	ENSG00000113648.17	ENST00000511689.6:ENST00000304332.8:ENST00000687629.1:ENST00000688649.1:ENST00000312469.8:ENST00000360597.8:ENST00000506671.5:ENST00000423969.6:ENST00000510038.1:ENST00000507868.5:ENST00000508785.5:ENST00000513210.5:ENST00000508120.5:ENST00000506532.5:ENST00000506218.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	29	2	4.06299	4.351725	4.64046	0.0559439	0.00724767	0.165463	0.0756327
chr5	138319574	138319674	2732080	0	-	0.33	(0.32,0.35]	chr5	257323	2	SS3_PROX	SS3_PROX:INTRON	CDC25C	ENSG00000158402.21	ENST00000323760.11:ENST00000415130.6:ENST00000648466.1:ENST00000513970.5:ENST00000514555.5:ENST00000503022.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	29	2	4.06299	4.351725	4.64046	0.0559439	0.00724767	0.165463	0.0756327
chr7	38726145	38726245	3521081	0	-	0.39	(0.378,0.408]	chr7	328337	33	UTR3	UTR3:EXON_MRNA	VPS41	ENSG00000006715.16	ENST00000310301.9:ENST00000395969.6:ENST00000490924.1:ENST00000448833.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	64	2	3.47322	4.351665	5.23011	0.00147803	5.72873e-4	0.0348908	0.0217398
chr1	6637800	6637899	368414	0	-	0.40404	(0.378,0.408]	chr1	43291	4	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DNAJC11	ENSG00000007923.17	ENST00000451196.5:ENST00000377577.10:ENST00000690452.1:ENST00000685129.1:ENST00000472414.2:ENST00000688524.1:ENST00000686243.1:ENST00000691481.1:ENST00000689025.1:ENST00000690062.1:ENST00000689474.1:ENST00000685360.1:ENST00000689169.1:ENST00000465508.6:ENST00000294401.11	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	29	2	3.96471	4.35155	4.73839	0.032421	0.00837252	0.145026	0.0774402
chr1	100431170	100431270	173418	0	+	0.38	(0.378,0.408]	chr1	18830	65	INTRON	INTRON	CDC14A	ENSG00000079335.20	ENST00000646665.1:ENST00000644844.1:ENST00000635056.2:ENST00000647005.1:ENST00000647203.1:ENST00000644676.1:ENST00000361544.11:ENST00000370124.8:ENST00000336454.5:ENST00000644813.1:ENST00000455467.6:ENST00000646563.1:ENST00000469387.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	29	2	3.96471	4.35155	4.73839	0.032421	0.00837252	0.145026	0.0774402
chr10	7274295	7274395	4551561	0	-	0.38	(0.378,0.408]	chr10	420212	253	INTRON	INTRON	SFMBT2	ENSG00000198879.13	ENST00000397167.6:ENST00000361972.8:ENST00000684547.1:ENST00000683762.1:ENST00000673876.1:ENST00000682896.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	29	2	3.96471	4.35155	4.73839	0.032421	0.00837252	0.145026	0.0774402
chr10	49834102	49834202	4615109	0	-	0.4	(0.378,0.408]	chr10	425130	8	INTRON	INTRON	PARG	ENSG00000227345.9	ENST00000402038.7:ENST00000616448.2:ENST00000614063.4:ENST00000610922.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	29	2	3.96471	4.35155	4.73839	0.032421	0.00837252	0.145026	0.0774402
chr14	67942925	67943025	5766605	0	+	0.39	(0.378,0.408]	chr14	547062	337	INTRON	INTRON	RAD51B	ENSG00000182185.19	ENST00000487861.5:ENST00000471583.6:ENST00000479335.5:ENST00000487270.5:ENST00000488612.5:ENST00000553595.5:ENST00000497460.5:ENST00000492236.5:ENST00000554244.5:ENST00000478014.5:ENST00000469165.6:ENST00000460526.5:ENST00000468382.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	29	2	3.96471	4.35155	4.73839	0.032421	0.00837252	0.145026	0.0774402
chr16	20830976	20831073	6318211	0	+	0.402062	(0.378,0.408]	chr16	604748	21	INTRON	INTRON	REXO5	ENSG00000005189.20	ENST00000566993.5:ENST00000348433.10:ENST00000261377.11:ENST00000565340.5:ENST00000564274.5:ENST00000561474.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	29	2	3.96471	4.35155	4.73839	0.032421	0.00837252	0.145026	0.0774402
chr16	67602139	67602239	6368008	0	+	0.39	(0.378,0.408]	chr16	611823	292	INTRON	INTRON	CTCF	ENSG00000102974.16	ENST00000646076.1:ENST00000644852.1:ENST00000264010.10:ENST00000401394.6:ENST00000646771.1:ENST00000642847.1:ENST00000644753.1:ENST00000642819.1:ENST00000645306.1:ENST00000643892.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	29	2	3.96471	4.35155	4.73839	0.032421	0.00837252	0.145026	0.0774402
chr20	46657353	46657453	7347686	0	-	0.38	(0.378,0.408]	chr20	749183	60	INTRON	INTRON	SLC13A3	ENSG00000158296.14	ENST00000290317.9:ENST00000472148.5:ENST00000468915.5:ENST00000372121.5:ENST00000417157.2	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	3.96471	4.35155	4.73839	0.032421	0.00837252	0.145026	0.0774402
chr19	55046007	55046107	7212122	0	-	0.51	(0.476,0.515]	chr19	732229	3	INTRON	INTRON	RDH13	ENSG00000160439.16	ENST00000591960.1:ENST00000415061.8:ENST00000610356.4:ENST00000396247.7:ENST00000291892.10:ENST00000592573.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	81	2	2.87406	4.35134	5.82862	0.00188729	3.00692e-5	0.0391691	0.00436729
chr3	179256367	179256466	1878221	0	-	0.40404	(0.378,0.408]	chr3	187618	49	INTRON	INTRON	KCNMB3	ENSG00000171121.17	ENST00000485523.5:ENST00000497599.5:ENST00000392686.6:ENST00000349697.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	58	2	3.27907	4.351325	5.42358	0.0023379	8.39231e-4	0.0442989	0.0266487
chr7	66754288	66754388	3325611	0	+	0.38	(0.378,0.408]	chr7	309233	131	INTRON	INTRON	RABGEF1	ENSG00000154710.18	ENST00000607882.5:ENST00000284957.9:ENST00000450873.6:ENST00000442563.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	58	2	3.27907	4.351325	5.42358	0.0023379	8.39231e-4	0.0442989	0.0266487
chr17	49676016	49676116	6793478	0	-	0.35	(0.32,0.35]	chr17	670319	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	SPOP	ENSG00000121067.19	ENST00000393328.6:ENST00000504102.6:ENST00000347630.6:ENST00000665825.1:ENST00000514121.6:ENST00000509079.6:ENST00000513080.6:ENST00000505581.5:ENST00000506399.5:ENST00000507970.5:ENST00000515508.6:ENST00000504212.5:ENST00000508805.5:ENST00000451526.6:ENST00000502385.1:ENST00000509765.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	68	2	3.31533	4.351085	5.38684	0.00323121	5.01164e-4	0.0507087	0.020217099999999998
chr22	49497089	49497189	7601050	0	-	0.34	(0.32,0.35]	chr22	778566	555	INTRON	INTRON	MIR3667HG	ENSG00000188511.13	ENST00000414287.5:ENST00000416411.1	lncRNA	lncRNA	lncRNA	lncRNA	2	83	2	2.89475	4.351045	5.80734	0.00160352	3.45606e-4	0.0367961	0.0173197
chr1	222566873	222566970	641633	0	-	0.329897	(0.32,0.35]	chr1	75706	24	INTRON	INTRON	TAF1A	ENSG00000143498.18	ENST00000350027.8:ENST00000366890.5:ENST00000352967.9:ENST00000391883.2:ENST00000487009.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	29	2	4.16186	4.3508700000000005	4.53988	0.026079	0.0202178	0.133676	0.109913
chr12	64420734	64420829	5153051	0	+	0.347368	(0.32,0.35]	chr12	487759	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	XPOT	ENSG00000184575.12	ENST00000332707.10	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	4.16186	4.3508700000000005	4.53988	0.026079	0.0202178	0.133676	0.109913
chr13	46582302	46582402	5481772	0	+	0.33	(0.32,0.35]	chr13	525230	282	INTRON	INTRON	LRCH1	ENSG00000136141.15	ENST00000311191.10:ENST00000389797.8:ENST00000443945.6:ENST00000389798.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	29	2	4.16186	4.3508700000000005	4.53988	0.026079	0.0202178	0.133676	0.109913
chr13	60079153	60079252	5603525	0	-	0.323232	(0.32,0.35]	chr13	535529	360	INTRON	INTRON	DIAPH3	ENSG00000139734.19	ENST00000400324.9:ENST00000377908.6:ENST00000400319.5:ENST00000400320.5:ENST00000267215.8	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	4.16186	4.3508700000000005	4.53988	0.026079	0.0202178	0.133676	0.109913
chr14	58211910	58212003	5730646	0	+	0.333333	(0.32,0.35]	chr14	544019	1	INTRON	INTRON	ACTR10	ENSG00000131966.14	ENST00000545307.6:ENST00000555229.5:ENST00000254286.9:ENST00000555337.5:ENST00000556748.5:ENST00000554402.6:ENST00000556694.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	29	2	4.16186	4.3508700000000005	4.53988	0.026079	0.0202178	0.133676	0.109913
chr14	76152917	76153002	5795975	0	+	0.329412	(0.32,0.35]	chr14	549130	5	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	GPATCH2L	ENSG00000089916.18	ENST00000554375.5:ENST00000556109.1:ENST00000557542.5:ENST00000261530.12:ENST00000557263.5:ENST00000557207.1:ENST00000554125.5:ENST00000312858.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	29	2	4.16186	4.3508700000000005	4.53988	0.026079	0.0202178	0.133676	0.109913
chr16	75335308	75335408	6528306	0	-	0.35	(0.32,0.35]	chr16	632300	289	INTRON	INTRON	CFDP1	ENSG00000153774.9	ENST00000283882.4:ENST00000564793.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	29	2	4.16186	4.3508700000000005	4.53988	0.026079	0.0202178	0.133676	0.109913
chr2	148672927	148673027	892034	0	+	0.33	(0.32,0.35]	chr2	98781	270	INTRON	INTRON	EPC2	ENSG00000135999.12	ENST00000457184.5:ENST00000258484.11:ENST00000409654.5:ENST00000397424.2	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	4.16186	4.3508700000000005	4.53988	0.026079	0.0202178	0.133676	0.109913
chr3	69756432	69756531	1448539	0	+	0.333333	(0.32,0.35]	chr3	152749	42	INTRON	INTRON	MITF	ENSG00000187098.18	ENST00000687384.1:ENST00000693031.1:ENST00000352241.9:ENST00000642352.1:ENST00000495741.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	29	2	4.16186	4.3508700000000005	4.53988	0.026079	0.0202178	0.133676	0.109913
chr5	66169059	66169158	2372747	0	+	0.343434	(0.32,0.35]	chr5	228682	43	EXON_MRNA	EXON_MRNA:INTRON	SREK1	ENSG00000153914.16	ENST00000334121.11:ENST00000520953.5:ENST00000522912.5:ENST00000524111.5:ENST00000380918.7:ENST00000284041.7:ENST00000520580.5:ENST00000519259.5:ENST00000523655.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	29	2	4.16186	4.3508700000000005	4.53988	0.026079	0.0202178	0.133676	0.109913
chr6	20419526	20419626	2827624	0	+	0.33	(0.32,0.35]	chr6	265575	153	INTRON	INTRON	E2F3	ENSG00000112242.16	ENST00000346618.8:ENST00000535432.2	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	4.16186	4.3508700000000005	4.53988	0.026079	0.0202178	0.133676	0.109913
chr6	36109542	36109642	2853891	0	+	0.35	(0.32,0.35]	chr6	269692	12	UTR3	UTR3:EXON_MRNA	MAPK14	ENSG00000112062.11	ENST00000229795.7:ENST00000229794.9	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	4.16186	4.3508700000000005	4.53988	0.026079	0.0202178	0.133676	0.109913
chr6	43519528	43519616	2871028	0	+	0.329545	(0.32,0.35]	chr6	272202	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	POLR1C	ENSG00000171453.20	ENST00000428025.6:ENST00000646188.1:ENST00000481352.6:ENST00000512472.5:ENST00000372344.6:ENST00000607635.2:ENST00000646433.1:ENST00000646700.1:ENST00000304004.7:ENST00000643799.1:ENST00000642195.1:ENST00000645141.1:ENST00000488601.6:ENST00000643341.1:ENST00000423780.1:ENST00000455605.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	29	2	4.16186	4.3508700000000005	4.53988	0.026079	0.0202178	0.133676	0.109913
chr6	152873507	152873607	3249519	0	-	0.34	(0.32,0.35]	chr6	301922	412	INTRON	INTRON	LINC02840	ENSG00000224893.7	ENST00000666093.1:ENST00000656248.1:ENST00000657202.1:ENST00000659837.1:ENST00000654424.1:ENST00000670414.1:ENST00000671138.1:ENST00000658966.1:ENST00000667732.1:ENST00000652681.1	lncRNA	lncRNA	lncRNA	lncRNA	0	29	2	4.16186	4.3508700000000005	4.53988	0.026079	0.0202178	0.133676	0.109913
chr7	43709999	43710099	3526183	0	-	0.35	(0.32,0.35]	chr7	328779	439	INTRON	INTRON	COA1	ENSG00000106603.20	ENST00000415076.6:ENST00000446330.6:ENST00000446564.5:ENST00000438444.5:ENST00000223336.11:ENST00000310564.10:ENST00000415798.5:ENST00000431651.5:ENST00000451651.5:ENST00000418140.5:ENST00000448704.5:ENST00000470156.1:ENST00000457939.1:ENST00000420441.1:ENST00000478504.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	29	2	4.16186	4.3508700000000005	4.53988	0.026079	0.0202178	0.133676	0.109913
chr1	100118318	100118417	515712	0	-	0.282828	(0.28,0.32]	chr1	60466	75	INTRON	INTRON	SASS6	ENSG00000156876.10	ENST00000462159.1:ENST00000287482.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	65	2	3.30893	4.35064	5.39235	0.00260504	0.0024844	0.0470772	0.0446195
chr1	1860074	1860174	362531	0	-	0.38	(0.378,0.408]	chr1	42311	200	INTRON	INTRON	GNB1	ENSG00000078369.18	ENST00000610897.4:ENST00000615252.4:ENST00000378609.9:ENST00000439272.6:ENST00000434686.6:ENST00000472614.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	30	2	3.82294	4.35028	4.87762	0.044228	0.00553849	0.162255	0.0648867
chr17	58085781	58085881	6637087	0	+	0.38	(0.378,0.408]	chr17	648146	17	INTRON	INTRON	DYNLL2	ENSG00000264364.3	ENST00000579991.3	protein_coding	protein_coding	protein_coding	protein_coding	0	30	2	3.82294	4.35028	4.87762	0.044228	0.00553849	0.162255	0.0648867
chr5	131388812	131388910	2485890	0	+	0.408163	(0.378,0.408]	chr5	237141	28	INTRON	INTRON	CDC42SE2	ENSG00000158985.14	ENST00000395246.5:ENST00000505065.2:ENST00000503291.5:ENST00000360515.7:ENST00000502582.1	protein_coding	protein_coding	protein_coding	protein_coding	0	30	2	3.82294	4.35028	4.87762	0.044228	0.00553849	0.162255	0.0648867
chr12	64420925	64421021	5153053	0	+	0.5	(0.476,0.515]	chr12	487759	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	XPOT	ENSG00000184575.12	ENST00000332707.10	protein_coding	protein_coding	protein_coding	protein_coding	1	58	2	3.66565	4.350155	5.03466	0.00252065	4.18031e-4	0.0446195	0.0182827
chr1	52825171	52825269	104881	0	+	0.244898	[0,0.28]	chr1	13715	37	UTR3	UTR3:EXON_MRNA	ZYG11B	ENSG00000162378.13	ENST00000294353.7	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.07901	4.349925000000001	4.62084	0.0494049	0.0313633	0.174117	0.13151
chr11	11866804	11866904	4735803	0	+	0.25	[0,0.28]	chr11	438597	242	INTRON	INTRON	USP47	ENSG00000170242.19	ENST00000339865.9:ENST00000525257.1:ENST00000527733.7:ENST00000399455.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	31	2	4.07901	4.349925000000001	4.62084	0.0494049	0.0313633	0.174117	0.13151
chr13	99560622	99560720	5527484	0	+	0.22449	[0,0.28]	chr13	528430	7	INTRON	INTRON	TM9SF2	ENSG00000125304.10	ENST00000642475.1:ENST00000376387.5	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.07901	4.349925000000001	4.62084	0.0494049	0.0313633	0.174117	0.13151
chr15	38317741	38317841	5999002	0	+	0.28	[0,0.28]	chr15	570212	178	INTRON	INTRON	SPRED1	ENSG00000166068.13	ENST00000299084.9:ENST00000561205.1:ENST00000561317.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	31	2	4.07901	4.349925000000001	4.62084	0.0494049	0.0313633	0.174117	0.13151
chr8	47781562	47781661	3943876	0	-	0.252525	[0,0.28]	chr8	361537	21	INTRON	INTRON	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7:ENST00000521331.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	31	2	4.07901	4.349925000000001	4.62084	0.0494049	0.0313633	0.174117	0.13151
chr17	32481726	32481825	6598732	0	+	0.343434	(0.32,0.35]	chr17	642028	12	UTR3	UTR3:EXON_MRNA	PSMD11	ENSG00000108671.11	ENST00000649012.1:ENST00000261712.8	protein_coding	protein_coding	protein_coding	protein_coding	3	100	2	2.7634	4.34987	5.93634	8.19858e-4	2.02056e-4	0.026165	0.0129814
chr1	27249895	27249995	53170	0	+	0.37	(0.35,0.378]	chr1	6792	146	INTRON	INTRON	WDTC1	ENSG00000142784.16	ENST00000319394.8:ENST00000361771.7	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.29839	4.349835000000001	4.40128	0.0294717	0.0120289	0.128055	0.0962115
chr1	90962271	90962371	501928	0	-	0.36	(0.35,0.378]	chr1	59492	206	INTRON	INTRON	ZNF644	ENSG00000122482.22	ENST00000370440.5:ENST00000337393.10:ENST00000347275.9:ENST00000361321.5:ENST00000467231.5:ENST00000498303.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	28	2	4.29839	4.349835000000001	4.40128	0.0294717	0.0120289	0.128055	0.0962115
chr10	107009176	107009276	4689722	0	-	0.36	(0.35,0.378]	chr10	432765	522	INTRON	INTRON	SORCS1	ENSG00000108018.16	ENST00000263054.11	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.29839	4.349835000000001	4.40128	0.0294717	0.0120289	0.128055	0.0962115
chr15	87376814	87376913	6253315	0	-	0.353535	(0.35,0.378]	chr15	596790	496	INTRON	INTRON	ENSG00000259560	ENSG00000259560.2	ENST00000665121.1:ENST00000656130.1	lncRNA	lncRNA	lncRNA	lncRNA	0	28	2	4.29839	4.349835000000001	4.40128	0.0294717	0.0120289	0.128055	0.0962115
chr20	16493690	16493790	7318745	0	-	0.36	(0.35,0.378]	chr20	745061	634	INTRON	INTRON	KIF16B	ENSG00000089177.19	ENST00000354981.7:ENST00000636835.1:ENST00000408042.5	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.29839	4.349835000000001	4.40128	0.0294717	0.0120289	0.128055	0.0962115
chr22	19827466	19827566	7555354	0	-	0.36	(0.35,0.378]	chr22	772443	57	INTRON	INTRON	GNB1L	ENSG00000185838.14	ENST00000329517.11:ENST00000403325.5:ENST00000405009.5:ENST00000460402.5:ENST00000481086.1:ENST00000453108.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	28	2	4.29839	4.349835000000001	4.40128	0.0294717	0.0120289	0.128055	0.0962115
chr22	20614530	20614628	7557662	0	-	0.367347	(0.35,0.378]	chr22	772876	4	INTRON	INTRON	SMPD4P1	ENSG00000223553.6	ENST00000416717.6	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	0	28	2	4.29839	4.349835000000001	4.40128	0.0294717	0.0120289	0.128055	0.0962115
chr3	47100957	47101057	1680963	0	-	0.36	(0.35,0.378]	chr3	171575	1	SS5_PROX	SS5_PROX:INTRON	SETD2	ENSG00000181555.22	ENST00000691544.1:ENST00000638947.2:ENST00000686876.1:ENST00000431180.5:ENST00000409792.4:ENST00000330022.11:ENST00000686773.1:ENST00000685005.1:ENST00000690461.1:ENST00000685505.1:ENST00000692883.1:ENST00000693321.1:ENST00000688290.1:ENST00000691902.1:ENST00000690157.1:ENST00000692362.1:ENST00000445387.5:ENST00000685399.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	28	2	4.29839	4.349835000000001	4.40128	0.0294717	0.0120289	0.128055	0.0962115
chr5	91381914	91382013	2674980	0	-	0.353535	(0.35,0.378]	chr5	253125	10	INTRON	INTRON	ARRDC3	ENSG00000113369.9	ENST00000265138.4:ENST00000507075.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	28	2	4.29839	4.349835000000001	4.40128	0.0294717	0.0120289	0.128055	0.0962115
chr6	83048022	83048121	3145355	0	-	0.434343	(0.408,0.44]	chr6	293205	30	INTRON	INTRON	UBE3D	ENSG00000118420.17	ENST00000369747.8:ENST00000237186.10:ENST00000509102.5:ENST00000430071.6:ENST00000369746.2:ENST00000505226.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	138	2	2.16948	4.349785000000001	6.53009	0.00236307	4.01382e-7	0.0437545	3.28505e-4
chr4	79323777	79323877	2168786	0	-	0.5	(0.476,0.515]	chr4	213822	56	INTRON	INTRON	NAA11	ENSG00000156269.5	ENST00000511542.1:ENST00000513733.1:ENST00000286794.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	58	2	3.07422	4.34972	5.62522	0.00506023	2.4907e-4	0.0646039	0.0145812
chr6	98936969	98937068	3165480	0	-	0.434343	(0.408,0.44]	chr6	295225	17	INTRON	INTRON	FBXL4	ENSG00000112234.9	ENST00000369244.7:ENST00000229971.2	protein_coding	protein_coding	protein_coding	protein_coding	1	57	2	3.50731	4.349665	5.19202	0.0016671	8.5918e-4	0.0369207	0.0265787
chr16	70385013	70385112	6510918	0	-	0.59596	(0.57,1]	chr16	630663	14	INTRON	INTRON	ST3GAL2	ENSG00000157350.13	ENST00000342907.3:ENST00000393640.8:ENST00000567822.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	39	2	3.42323	4.34962	5.27601	8.58388e-4	3.73525e-5	0.0267428	0.00489903
chr2	191686967	191687067	960456	0	+	0.38	(0.378,0.408]	chr2	104307	13	UTR3	UTR3:EXON_MRNA	NABP1	ENSG00000173559.15	ENST00000674262.1:ENST00000674360.1:ENST00000674406.1:ENST00000674414.1:ENST00000410026.7:ENST00000674172.1:ENST00000674187.1:ENST00000307849.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	63	2	3.35998	4.349135	5.33829	0.00230615	3.59275e-4	0.0428247	0.0169207
chr14	49785683	49785774	5886554	0	-	0.428571	(0.408,0.44]	chr14	558641	5	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	NEMF	ENSG00000165525.18	ENST00000298310.10:ENST00000556691.5:ENST00000556074.5:ENST00000556925.5:ENST00000557193.1:ENST00000554275.1:ENST00000555970.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	58	2	3.08738	4.34903	5.61068	0.00478231	3.21002e-4	0.0636201	0.0165409
chr7	121216819	121216919	3395937	0	+	0.43	(0.408,0.44]	chr7	317781	668	INTRON	INTRON	CPED1	ENSG00000106034.18	ENST00000310396.10:ENST00000450913.6:ENST00000423795.5:ENST00000466055.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	58	2	3.08738	4.34903	5.61068	0.00478231	3.21002e-4	0.0636201	0.0165409
chr4	39702583	39702682	1953036	0	+	0.252525	[0,0.28]	chr4	195630	38	INTRON	INTRON	UBE2K	ENSG00000078140.14	ENST00000510934.5:ENST00000261427.10:ENST00000438068.6:ENST00000513231.5:ENST00000503368.5:ENST00000445950.2:ENST00000510719.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	70	2	3.2223	4.34872	5.47514	0.00422777	0.00354561	0.0595466	0.0529186
chr7	158640089	158640187	3688111	0	-	0.316327	(0.28,0.32]	chr7	342109	4	UTR3	UTR3:EXON_MRNA:INTRON	NCAPG2	ENSG00000146918.20	ENST00000356309.8:ENST00000432615.5:ENST00000409423.5:ENST00000441982.5:ENST00000467785.5:ENST00000409339.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	105	2	2.5905300000000002	4.34856	6.10659	0.0020216	1.73268e-4	0.0416117	0.0120833
chr19	46382910	46383010	7081679	0	+	0.42	(0.408,0.44]	chr19	708541	15	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	PPP5C	ENSG00000011485.15	ENST00000012443.9:ENST00000478046.5:ENST00000391919.1:ENST00000527193.1:ENST00000487483.6:ENST00000532058.1:ENST00000486994.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	61	2	3.10641	4.34843	5.59045	0.00555646	9.6776e-5	0.0648867	0.00826486
chr15	76270615	76270715	6227925	0	-	0.43	(0.408,0.44]	chr15	594907	250	INTRON	INTRON	ETFA	ENSG00000140374.17	ENST00000690610.1:ENST00000557943.6:ENST00000692691.1:ENST00000688389.1:ENST00000687293.1:ENST00000691695.1:ENST00000685863.1:ENST00000689730.1:ENST00000687975.1:ENST00000693064.1:ENST00000688908.1:ENST00000691021.1:ENST00000433983.6:ENST00000267950.12:ENST00000685548.1:ENST00000565910.6:ENST00000688154.1:ENST00000560595.6:ENST00000560726.5:ENST00000559602.5:ENST00000560044.6:ENST00000559973.5:ENST00000559386.2:ENST00000560899.5:ENST00000685118.1:ENST00000688637.1:ENST00000559075.5:ENST00000689739.1:ENST00000691071.1:ENST00000560816.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	61	2	3.2451	4.3483149999999995	5.45153	0.00337792	1.89064e-4	0.0516884	0.0119565
chr9	137668782	137668881	4223978	0	+	0.434343	(0.408,0.44]	chr9	388187	9	INTRON	INTRON	EHMT1	ENSG00000181090.21	ENST00000462484.5:ENST00000371394.6:ENST00000630754.2:ENST00000460843.6:ENST00000626216.2:ENST00000629335.2:ENST00000637335.1:ENST00000636376.1:ENST00000637655.1:ENST00000636027.1:ENST00000492232.5:ENST00000460486.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	61	2	3.2451	4.3483149999999995	5.45153	0.00337792	1.89064e-4	0.0516884	0.0119565
chr6	17678356	17678455	3065927	0	-	0.262626	[0,0.28]	chr6	284866	22	INTRON	INTRON	NUP153	ENSG00000124789.12	ENST00000613258.4:ENST00000537253.5:ENST00000262077.3	protein_coding	protein_coding	protein_coding	protein_coding	1	70	2	3.2621000000000002	4.348190000000001	5.43428	0.00400834	0.00367113	0.056059199999999997	0.0551303
chr5	176915777	176915877	2776015	0	-	0.29	(0.28,0.32]	chr5	261520	40	INTRON	INTRON	UIMC1	ENSG00000087206.17	ENST00000377227.8:ENST00000511320.6:ENST00000506128.5:ENST00000512031.5:ENST00000510698.2:ENST00000503273.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	71	2	2.96187	4.34766	5.73345	0.0114995	1.71668e-4	0.0889104	0.0113605
chr12	42441605	42441701	5119397	0	+	0.197917	[0,0.28]	chr12	482993	2	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	PPHLN1	ENSG00000134283.18	ENST00000549190.5:ENST00000337898.10:ENST00000395580.7:ENST00000610488.4:ENST00000619544.4:ENST00000613154.4:ENST00000395568.6:ENST00000256678.12:ENST00000358314.12:ENST00000449194.6:ENST00000317560.13:ENST00000432191.6	protein_coding	protein_coding	protein_coding	protein_coding	1	76	2	2.63238	4.34755	6.06272	0.0259691	4.91495e-4	0.133676	0.0205704
chr1	52885894	52885994	105348	0	+	0.39	(0.378,0.408]	chr1	13778	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ZYG11A	ENSG00000203995.10	ENST00000371532.5:ENST00000612017.4:ENST00000371528.2	protein_coding	protein_coding	protein_coding	protein_coding	1	58	2	3.5186	4.347435	5.17627	0.00208234	8.45009e-4	0.0411801	0.0263813
chr10	84141182	84141275	4477051	0	+	0.387097	(0.378,0.408]	chr10	412123	5	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GHITM	ENSG00000165678.22	ENST00000691609.1:ENST00000372134.6:ENST00000690587.1:ENST00000686583.1:ENST00000690067.1:ENST00000691751.1:ENST00000687085.1:ENST00000692871.1:ENST00000691155.1:ENST00000690920.1:ENST00000688802.1:ENST00000686247.1:ENST00000690283.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	58	2	3.5186	4.347435	5.17627	0.00208234	8.45009e-4	0.0411801	0.0263813
chr3	138753457	138753556	1830682	0	-	0.393939	(0.378,0.408]	chr3	184037	103	INTRON	INTRON	PIK3CB	ENSG00000051382.9	ENST00000674063.1:ENST00000289153.6:ENST00000477593.5:ENST00000462898.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	58	2	3.5186	4.347435	5.17627	0.00208234	8.45009e-4	0.0411801	0.0263813
chr3	161244742	161244841	1546434	0	+	0.383838	(0.378,0.408]	chr3	160869	17	INTRON	INTRON	NMD3	ENSG00000169251.13	ENST00000472947.5:ENST00000351193.7:ENST00000460469.1	protein_coding	protein_coding	protein_coding	protein_coding	1	58	2	3.5186	4.347435	5.17627	0.00208234	8.45009e-4	0.0411801	0.0263813
chr3	182967048	182967147	1879799	0	-	0.393939	(0.378,0.408]	chr3	187821	9	INTRON	INTRON	DCUN1D1	ENSG00000043093.15	ENST00000292782.9:ENST00000632685.1:ENST00000460412.6:ENST00000469954.5:ENST00000492563.1:ENST00000497606.5:ENST00000487822.5:ENST00000466812.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	58	2	3.5186	4.347435	5.17627	0.00208234	8.45009e-4	0.0411801	0.0263813
chr12	57395448	57395548	5338902	0	-	0.49	(0.476,0.515]	chr12	510711	3	SS5_PROX	SS5_PROX:INTRON	R3HDM2	ENSG00000179912.21	ENST00000402412.6:ENST00000347140.7:ENST00000634871.1:ENST00000448732.1	protein_coding	protein_coding	protein_coding	protein_coding	1	61	2	3.45711	4.3474	5.23769	0.00140905	5.17244e-4	0.0340865	0.0203753
chr11	86040097	86040197	5014553	0	-	0.27	[0,0.28]	chr11	473022	81	INTRON	INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000630913.2:ENST00000528398.5:ENST00000356360.9:ENST00000534412.5:ENST00000531558.1:ENST00000531930.5:ENST00000532041.5:ENST00000525162.5:ENST00000528256.1:ENST00000528411.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	105	2	2.48772	4.347395	6.20707	0.0125761	4.38815e-5	0.0926667	0.00536299
chr7	12374388	12374488	3485133	0	-	0.22	[0,0.28]	chr7	325920	3	SS5_PROX	SS5_PROX:INTRON	VWDE	ENSG00000146530.15	ENST00000275358.8:ENST00000452576.6:ENST00000521169.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	114	2	2.45531	4.347239999999999	6.23917	0.00415834	2.51349e-4	0.0590857	0.0146599
chr3	14449705	14449805	1369875	0	+	0.42	(0.408,0.44]	chr3	144349	15	INTRON	INTRON	SLC6A6	ENSG00000131389.18	ENST00000613060.4:ENST00000618278.4:ENST00000610642.4:ENST00000649500.1:ENST00000622186.5:ENST00000622176.4:ENST00000615188.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	65	2	3.69572	4.3470450000000005	4.99837	0.00131369	5.37849e-4	0.0333932	0.0214775
chr2	169626485	169626585	906904	0	+	0.44	(0.408,0.44]	chr2	100061	114	INTRON	INTRON	PPIG	ENSG00000138398.17	ENST00000678088.1:ENST00000677392.1:ENST00000433207.6:ENST00000679324.1:ENST00000414307.6:ENST00000676508.1:ENST00000260970.8:ENST00000678695.1:ENST00000409714.7:ENST00000530152.5:ENST00000677750.1:ENST00000678721.1:ENST00000462903.6:ENST00000676756.1:ENST00000679107.1:ENST00000678499.1:ENST00000678638.1:ENST00000448752.7:ENST00000417938.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	76	2	2.82511	4.34695	5.86879	0.00189528	1.0135e-4	0.0402736	0.00906611
chr7	140468697	140468796	3661519	0	-	0.30303	(0.28,0.32]	chr7	339916	81	INTRON	INTRON	MKRN1	ENSG00000133606.11	ENST00000255977.7:ENST00000475010.5:ENST00000495305.5:ENST00000474576.5:ENST00000480552.5:ENST00000496169.5:ENST00000443720.6:ENST00000471104.5:ENST00000467513.5:ENST00000494939.1:ENST00000498535.1:ENST00000473444.1:ENST00000475180.5:ENST00000481705.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	196	2	1.75413	4.346685	6.93924	0.0049544	3.44819e-6	0.0646039	0.00131943
chr10	50126774	50126869	4433984	0	+	0.357895	(0.35,0.378]	chr10	408947	2	SS3_PROX	SS3_PROX:INTRON	WASHC2A	ENSG00000099290.17	ENST00000611324.4:ENST00000351071.11:ENST00000314664.12:ENST00000434114.6:ENST00000282633.10:ENST00000399339.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	28	2	4.1971	4.34668	4.49626	0.0367539	0.00917582	0.138959	0.0855292
chr12	43739187	43739286	5313985	0	-	0.353535	(0.35,0.378]	chr12	505422	4	INTRON	INTRON	PUS7L	ENSG00000129317.15	ENST00000344862.10:ENST00000416848.6:ENST00000551923.5:ENST00000431332.7:ENST00000550784.5:ENST00000547156.1	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.1971	4.34668	4.49626	0.0367539	0.00917582	0.138959	0.0855292
chr15	55355924	55356022	6181371	0	-	0.357143	(0.35,0.378]	chr15	589207	8	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	CCPG1	ENSG00000260916.8	ENST00000564663.1:ENST00000442196.8:ENST00000310958.10:ENST00000425574.7:ENST00000568543.1	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.1971	4.34668	4.49626	0.0367539	0.00917582	0.138959	0.0855292
chr2	178426856	178426955	930396	0	+	0.373737	(0.35,0.378]	chr2	102176	6	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	CHROMR	ENSG00000223960.8	ENST00000453026.7:ENST00000690483.1:ENST00000436616.4:ENST00000665039.1:ENST00000663803.1:ENST00000666480.1:ENST00000688877.1:ENST00000661271.1:ENST00000691722.1:ENST00000659708.2:ENST00000692047.1:ENST00000684892.1:ENST00000420672.1:ENST00000691078.1:ENST00000668138.1:ENST00000660374.1:ENST00000454488.6:ENST00000450044.1:ENST00000688261.1:ENST00000691493.1:ENST00000662743.1:ENST00000415236.1	lncRNA	lncRNA	lncRNA	lncRNA	0	28	2	4.1971	4.34668	4.49626	0.0367539	0.00917582	0.138959	0.0855292
chr3	43728997	43729097	1410568	0	+	0.37	(0.35,0.378]	chr3	147966	64	INTRON	INTRON	ABHD5	ENSG00000011198.10	ENST00000649763.1:ENST00000454293.2:ENST00000463153.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	28	2	4.1971	4.34668	4.49626	0.0367539	0.00917582	0.138959	0.0855292
chr6	87532838	87532937	3152052	0	-	0.373737	(0.35,0.378]	chr6	294014	15	INTRON	INTRON	RARS2	ENSG00000146282.19	ENST00000691533.1:ENST00000493269.2:ENST00000685069.1:ENST00000691725.1:ENST00000369536.10:ENST00000693431.1:ENST00000685408.1:ENST00000693327.1:ENST00000691205.1:ENST00000689174.1:ENST00000692684.1:ENST00000686988.1:ENST00000690622.1:ENST00000689206.1:ENST00000688532.1:ENST00000686154.1:ENST00000686407.1:ENST00000685701.1:ENST00000689561.1:ENST00000691238.1:ENST00000685336.1:ENST00000686284.1:ENST00000687586.1:ENST00000685376.1:ENST00000685881.1:ENST00000691815.1:ENST00000687090.1:ENST00000451155.2:ENST00000687437.1:ENST00000692394.1:ENST00000687729.1:ENST00000693605.1:ENST00000687909.1:ENST00000688391.1:ENST00000690884.1:ENST00000692843.1:ENST00000684790.1:ENST00000692270.1:ENST00000685219.1:ENST00000689952.1:ENST00000687579.1:ENST00000686857.1:ENST00000690205.1:ENST00000690705.1:ENST00000686142.1:ENST00000688106.1:ENST00000686196.1:ENST00000688842.1:ENST00000687078.1:ENST00000690555.1:ENST00000692934.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	28	2	4.1971	4.34668	4.49626	0.0367539	0.00917582	0.138959	0.0855292
chr7	55981075	55981174	3318818	0	+	0.363636	(0.35,0.378]	chr7	308418	13	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	NIPSNAP2	ENSG00000146729.10	ENST00000446692.5:ENST00000446778.5:ENST00000322090.8:ENST00000456204.5:ENST00000437587.5:ENST00000487370.5:ENST00000472404.1:ENST00000497279.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	28	2	4.1971	4.34668	4.49626	0.0367539	0.00917582	0.138959	0.0855292
chr7	127677044	127677144	3402640	0	+	0.36	(0.35,0.378]	chr7	318063	242	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000463020.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	28	2	4.1971	4.34668	4.49626	0.0367539	0.00917582	0.138959	0.0855292
chr8	139869194	139869293	4069430	0	-	0.353535	(0.35,0.378]	chr8	370001	631	INTRON	INTRON	TRAPPC9	ENSG00000167632.18	ENST00000648948.2:ENST00000438773.4:ENST00000520857.5:ENST00000521667.5:ENST00000522504.5:ENST00000519482.1:ENST00000524162.5:ENST00000523777.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	28	2	4.1971	4.34668	4.49626	0.0367539	0.00917582	0.138959	0.0855292
chr1	39459832	39459932	78574	0	+	0.37	(0.35,0.378]	chr1	10193	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	MACF1	ENSG00000127603.32	ENST00000361689.7:ENST00000567887.5:ENST00000372915.8:ENST00000564288.6:ENST00000671089.2:ENST00000372925.6:ENST00000289893.8:ENST00000686067.1:ENST00000687997.1:ENST00000683517.1:ENST00000691623.1:ENST00000360115.8:ENST00000497964.1:ENST00000446276.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	28	2	4.29961	4.34632	4.39303	0.0237246	0.0158483	0.118716	0.109464
chr10	68428447	68428546	4639320	0	-	0.363636	(0.35,0.378]	chr10	426660	52	INTRON	INTRON	DNA2	ENSG00000138346.15	ENST00000358410.8:ENST00000551118.6:ENST00000399179.6:ENST00000399180.3:ENST00000440722.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	28	2	4.29961	4.34632	4.39303	0.0237246	0.0158483	0.118716	0.109464
chr11	95799588	95799688	4853623	0	+	0.37	(0.35,0.378]	chr11	452697	2	SS5_PROX	SS5_PROX:INTRON	CEP57	ENSG00000166037.11	ENST00000537677.5:ENST00000325486.9:ENST00000325542.10:ENST00000538095.1:ENST00000544522.5:ENST00000539855.5:ENST00000541365.5:ENST00000535497.1:ENST00000540830.5:ENST00000538658.5:ENST00000541150.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	28	2	4.29961	4.34632	4.39303	0.0237246	0.0158483	0.118716	0.109464
chr17	37254824	37254923	6761505	0	-	0.373737	(0.35,0.378]	chr17	664866	14	INTRON	INTRON	ACACA	ENSG00000278540.5	ENST00000616317.5:ENST00000614428.4:ENST00000612895.4:ENST00000617649.4:ENST00000613146.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	28	2	4.29961	4.34632	4.39303	0.0237246	0.0158483	0.118716	0.109464
chr2	95946262	95946360	1179273	0	-	0.357143	(0.35,0.378]	chr2	126031	7	INTRON	INTRON	ANKRD36C	ENSG00000174501.15	ENST00000295246.7:ENST00000456556.5:ENST00000528268.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	28	2	4.29961	4.34632	4.39303	0.0237246	0.0158483	0.118716	0.109464
chr3	152252039	152252139	1534811	0	+	0.36	(0.35,0.378]	chr3	159973	72	INTRON	INTRON	MBNL1	ENSG00000152601.18	ENST00000477171.1	protein_coding	processed_transcript	protein_coding	processed_transcript	0	28	2	4.29961	4.34632	4.39303	0.0237246	0.0158483	0.118716	0.109464
chr4	87375725	87375824	2199126	0	-	0.353535	(0.35,0.378]	chr4	215774	5	INTRON	INTRON	HSD17B11	ENSG00000198189.11	ENST00000358290.9:ENST00000507286.1:ENST00000508413.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	28	2	4.29961	4.34632	4.39303	0.0237246	0.0158483	0.118716	0.109464
chr5	141274925	141275025	2738633	0	-	0.36	(0.35,0.378]	chr5	257993	106	INTRON	INTRON	TAF7	ENSG00000178913.9	ENST00000686518.1:ENST00000624699.1	protein_coding	processed_transcript	protein_coding	processed_transcript	0	28	2	4.29961	4.34632	4.39303	0.0237246	0.0158483	0.118716	0.109464
chr5	148429143	148429242	2516672	0	+	0.363636	(0.35,0.378]	chr5	240542	8	INTRON	INTRON	FBXO38	ENSG00000145868.17	ENST00000296701.10:ENST00000340253.10:ENST00000394370.7:ENST00000513826.1:ENST00000505399.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	28	2	4.29961	4.34632	4.39303	0.0237246	0.0158483	0.118716	0.109464
chr6	33258421	33258520	3082282	0	-	0.363636	(0.35,0.378]	chr6	288175	61	INTRON	INTRON	VPS52	ENSG00000223501.9	ENST00000478934.5:ENST00000482399.5:ENST00000445902.3:ENST00000495981.5:ENST00000493674.5:ENST00000471309.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	28	2	4.29961	4.34632	4.39303	0.0237246	0.0158483	0.118716	0.109464
chr7	39656876	39656976	3309483	0	+	0.36	(0.35,0.378]	chr7	307358	321	INTRON	INTRON	RALA	ENSG00000006451.8	ENST00000468201.1:ENST00000005257.7:ENST00000436179.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	28	2	4.29961	4.34632	4.39303	0.0237246	0.0158483	0.118716	0.109464
chr7	65907721	65907821	3323222	0	+	0.36	(0.35,0.378]	chr7	309012	338	INTRON	INTRON	VKORC1L1	ENSG00000196715.7	ENST00000360768.5:ENST00000648187.1:ENST00000648179.1:ENST00000434382.2	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.29961	4.34632	4.39303	0.0237246	0.0158483	0.118716	0.109464
chr8	17212759	17212858	3706998	0	+	0.363636	(0.35,0.378]	chr8	343694	19	INTRON	INTRON	ZDHHC2	ENSG00000104219.13	ENST00000262096.13	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.29961	4.34632	4.39303	0.0237246	0.0158483	0.118716	0.109464
chr8	52678067	52678166	3950737	0	-	0.353535	(0.35,0.378]	chr8	362361	11	INTRON	INTRON	RB1CC1	ENSG00000023287.13	ENST00000025008.10:ENST00000435644.6:ENST00000521611.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	28	2	4.29961	4.34632	4.39303	0.0237246	0.0158483	0.118716	0.109464
chr8	73846570	73846670	3971937	0	-	0.36	(0.35,0.378]	chr8	364247	157	INTRON	INTRON	ENSG00000258677:UBE2W	ENSG00000258677.2:ENSG00000104343.21	ENST00000358757.5:ENST00000602593.6:ENST00000517608.5:ENST00000650817.1:ENST00000422906.6:ENST00000419880.7:ENST00000651945.1:ENST00000519277.5:ENST00000519255.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	28	2	4.29961	4.34632	4.39303	0.0237246	0.0158483	0.118716	0.109464
chr9	132006639	132006739	4365459	0	-	0.36	(0.35,0.378]	chr9	401330	668	INTRON	INTRON	MED27	ENSG00000160563.14	ENST00000651950.1:ENST00000357028.6:ENST00000292035.10:ENST00000651555.1	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.29961	4.34632	4.39303	0.0237246	0.0158483	0.118716	0.109464
chr5	34951443	34951543	2337588	0	+	0.42	(0.408,0.44]	chr5	225786	11	EXON_LNCRNA	EXON_LNCRNA:INTRON	DNAJC21	ENSG00000168724.17	ENST00000648817.1:ENST00000382021.2:ENST00000642851.1:ENST00000642675.1:ENST00000642285.1:ENST00000646714.1:ENST00000512136.1:ENST00000506762.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	77	2	2.69457	4.3462250000000004	5.99788	0.00331036	5.47233e-5	0.0527031	0.00651589
chr9	130863634	130863734	4215363	0	+	0.38	(0.378,0.408]	chr9	386448	2	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000318560.6	protein_coding	protein_coding	protein_coding	protein_coding	2	77	2	2.90835	4.34604	5.78373	0.00133715	1.89312e-4	0.0335955	0.012565
chr5	181241140	181241233	2783892	0	-	0.591398	(0.57,1]	chr5	262931	3	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	RACK1	ENSG00000204628.12	ENST00000512805.6:ENST00000511473.5:ENST00000504325.5:ENST00000507756.5:ENST00000502905.5:ENST00000511566.5:ENST00000376817.8:ENST00000508682.5:ENST00000504128.5:ENST00000504726.1:ENST00000511900.5:ENST00000513060.5:ENST00000512968.5:ENST00000510199.5:ENST00000502844.5:ENST00000507000.5:ENST00000514183.5:ENST00000502548.5:ENST00000502890.5:ENST00000503494.5:ENST00000506312.3:ENST00000503081.1:ENST00000515417.5:ENST00000513027.3:ENST00000626067.1:ENST00000505461.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	39	2	3.56369	4.34591	5.12813	4.26536e-4	8.62401e-5	0.0189958	0.00783027
chr8	23225220	23225302	3714549	0	+	0.634146	(0.57,1]	chr8	345063	1	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	TNFRSF10A-DT	ENSG00000246582.3	ENST00000517774.1:ENST00000500853.1	lncRNA	lncRNA	lncRNA	lncRNA	1	39	2	3.56369	4.34591	5.12813	4.26536e-4	8.62401e-5	0.0189958	0.00783027
chr6	43227381	43227479	3096024	0	-	0.438776	(0.408,0.44]	chr6	289833	6	INTRON	INTRON	DNPH1	ENSG00000112667.13	ENST00000230431.11:ENST00000509253.5:ENST00000393987.2	protein_coding	protein_coding	protein_coding	protein_coding	1	60	2	2.89193	4.3457799999999995	5.79963	0.00950364	1.39468e-4	0.0863579	0.0107072
chr7	148862403	148862503	3670544	0	-	0.34	(0.32,0.35]	chr7	340628	147	INTRON	INTRON	EZH2	ENSG00000106462.12	ENST00000683292.1:ENST00000320356.7:ENST00000492143.5:ENST00000478654.5:ENST00000350995.6:ENST00000460911.5:ENST00000683744.1:ENST00000682317.1:ENST00000682263.1:ENST00000684300.1:ENST00000476773.5:ENST00000483967.5:ENST00000498186.5:ENST00000483012.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	86	2	3.31229	4.34531	5.37833	0.00174321	2.2038e-4	0.0375363	0.0130276
chr12	9677697	9677796	5075622	0	+	0.333333	(0.32,0.35]	chr12	479886	31	INTRON	INTRON	CLEC2D	ENSG00000069493.15	ENST00000536355.5:ENST00000487752.1:ENST00000290855.11:ENST00000325960.11:ENST00000261340.11:ENST00000444971.6:ENST00000492359.6:ENST00000479877.5:ENST00000261339.10:ENST00000543300.5:ENST00000545918.5:ENST00000466035.6:ENST00000476198.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	67	2	3.12146	4.3452649999999995	5.56907	0.00630799	2.27532e-4	0.0687526	0.0133228
chr5	90694069	90694159	2421785	0	+	0.477778	(0.476,0.515]	chr5	232956	3	CDS	CDS:UTR3:EXON_MRNA:INTRON	ADGRV1	ENSG00000164199.18	ENST00000405460.9:ENST00000640403.1:ENST00000639473.1:ENST00000639431.1:ENST00000640779.1:ENST00000640012.1:ENST00000640374.1:ENST00000509621.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	57	2	3.53895	4.3451900000000006	5.15143	0.00166579	0.00075485700000000005	0.0369207	0.0251966
chr2	157261632	157261732	896557	0	+	0.31	(0.28,0.32]	chr2	99276	17	INTRON	INTRON	GALNT5	ENSG00000136542.9	ENST00000259056.5	protein_coding	protein_coding	protein_coding	protein_coding	4	120	2	2.3365	4.344565	6.3526300000000004	0.00286158	5.94762e-5	0.0494641	0.00676405
chr8	127741057	127741157	3860020	0	+	0.33	(0.32,0.35]	chr8	355373	2	UTR3	UTR3:EXON_MRNA	MYC	ENSG00000136997.21	ENST00000651626.1:ENST00000377970.6:ENST00000524013.2:ENST00000621592.8:ENST00000652288.1	protein_coding	protein_coding	protein_coding	protein_coding	2	95	2	2.22429	4.3444400000000005	6.46459	0.0226421	2.06686e-6	0.117557	8.86423e-4
chr4	126714773	126714873	2237858	0	-	0.31	(0.28,0.32]	chr4	219029	161	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	1	71	2	2.91851	4.34437	5.77023	0.0130672	1.45293e-4	0.093385	0.0104769
chr7	128765169	128765268	3408643	0	+	0.464646	(0.44,0.476]	chr7	318457	37	INTRON	INTRON	CALU	ENSG00000128595.17	ENST00000535011.6:ENST00000542996.6:ENST00000249364.9:ENST00000449187.6:ENST00000479257.5:ENST00000493278.1	protein_coding	protein_coding	protein_coding	protein_coding	3	91	2	2.88226	4.344365	5.80647	3.71378e-4	1.22335e-4	0.0173619	0.00993581
chr4	139333473	139333573	2050011	0	+	0.35	(0.32,0.35]	chr4	203286	309	INTRON	INTRON	NAA15	ENSG00000164134.13	ENST00000296543.10:ENST00000398947.1:ENST00000482087.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	68	2	3.35116	4.344305	5.33745	0.00283808	6.1485e-4	0.0473151	0.0223951
chr2	43962794	43962891	1110277	0	-	0.412371	(0.408,0.44]	chr2	119084	18	INTRON	INTRON	LRPPRC	ENSG00000138095.20	ENST00000260665.12:ENST00000682308.1:ENST00000683459.1:ENST00000683623.1:ENST00000683125.1:ENST00000683994.1:ENST00000684619.1:ENST00000683833.1:ENST00000682546.1:ENST00000682585.1:ENST00000683220.1:ENST00000683796.1:ENST00000683590.1:ENST00000684306.1:ENST00000683213.1:ENST00000682779.1:ENST00000682885.1:ENST00000683346.1:ENST00000683072.1:ENST00000682303.1:ENST00000683329.1:ENST00000684383.1:ENST00000682480.1:ENST00000684290.1:ENST00000684341.1:ENST00000682595.1:ENST00000683802.1:ENST00000681961.1:ENST00000683694.1:ENST00000683989.1:ENST00000447246.2:ENST00000409659.6:ENST00000682104.1:ENST00000683934.1:ENST00000681959.1:ENST00000684482.1:ENST00000683082.1:ENST00000467058.2:ENST00000409946.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	57	2	3.20437	4.344265	5.48416	0.00306596	5.43528e-4	0.0509893	0.0215026
chr19	23790154	23790254	7042707	0	+	0.52	(0.515,0.57]	chr19	702227	28	INTRON	INTRON	RPSAP58	ENSG00000288920.1	ENST00000471224.5:ENST00000692590.1:ENST00000475499.2:ENST00000686829.1:ENST00000689525.1:ENST00000691397.1:ENST00000688405.1:ENST00000687994.1:ENST00000484897.4:ENST00000685490.1:ENST00000462186.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	69	2	2.87626	4.344225	5.81219	0.00136224	4.05175e-5	0.0339121	0.00539487
chr4	70959140	70959240	1971076	0	+	0.27	[0,0.28]	chr4	197589	1	SS5_PROX	SS5_PROX:INTRON	MOB1B	ENSG00000173542.9	ENST00000502869.5:ENST00000509041.5:ENST00000309395.7:ENST00000396051.2:ENST00000511449.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	72	2	3.57809	4.34421	5.11033	0.00991388	0.00109779	0.0838372	0.0303708
chr5	88211574	88211674	2669162	0	-	0.59	(0.57,1]	chr5	252658	40	INTRON	INTRON	TMEM161B	ENSG00000164180.14	ENST00000514135.5:ENST00000296595.11:ENST00000511087.5:ENST00000510089.5:ENST00000506536.5:ENST00000511218.5:ENST00000512429.5:ENST00000507872.1:ENST00000509387.5:ENST00000503755.5:ENST00000513487.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	53	2	3.48429	4.344125	5.20396	5.65393e-5	3.68893e-5	0.00613846	0.00515993
chr3	184179777	184179874	1581892	0	+	0.515464	(0.515,0.57]	chr3	163373	7	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	AP2M1	ENSG00000161203.14	ENST00000382456.7:ENST00000686364.1:ENST00000448139.6:ENST00000484469.6:ENST00000688830.1:ENST00000686942.1:ENST00000292807.9:ENST00000461733.6:ENST00000455925.2:ENST00000468048.6:ENST00000466598.6:ENST00000487958.6:ENST00000687623.1:ENST00000685290.1:ENST00000684853.1:ENST00000688579.1:ENST00000685698.1:ENST00000480260.2:ENST00000692019.1:ENST00000460862.6:ENST00000427072.6:ENST00000411763.6:ENST00000442686.2:ENST00000431779.6:ENST00000690285.1:ENST00000472560.6:ENST00000621863.5:ENST00000439647.5:ENST00000432591.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	108	2	4.09909	4.344005	4.58892	4.72555e-5	1.34527e-6	0.00593159	6.8311e-4
chr6	17602189	17602289	2826632	0	+	0.55	(0.515,0.57]	chr6	265415	2	SS3_PROX	SS3_PROX:INTRON	FAM8A1	ENSG00000137414.7	ENST00000259963.4:ENST00000688732.1:ENST00000690940.1:ENST00000691422.1:ENST00000692803.1:ENST00000689378.1:ENST00000685064.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	55	2	3.03037	4.343875	5.65738	0.00608732	3.32659e-5	0.0676501	0.00461719
chr19	46726461	46726559	7195053	0	-	0.489796	(0.476,0.515]	chr19	728888	3	INTRON	INTRON	STRN4	ENSG00000090372.15	ENST00000391910.7:ENST00000263280.11:ENST00000539396.5:ENST00000595357.5:ENST00000594287.6:ENST00000601631.6:ENST00000594357.6:ENST00000600358.7:ENST00000435164.6:ENST00000602223.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	220	2	4.07797	4.343859999999999	4.60975	3.24194e-6	3.11351e-8	0.00128387	6.96497e-5
chr6	134974603	134974703	3224644	0	-	0.3	(0.28,0.32]	chr6	299772	49	INTRON	INTRON	HBS1L	ENSG00000112339.15	ENST00000367837.10:ENST00000527578.5:ENST00000527005.5:ENST00000415177.6:ENST00000367826.6:ENST00000533274.5:ENST00000526100.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	87	2	2.91124	4.34385	5.77646	0.00165124	6.44045e-4	0.0375241	0.0231685
chr6	159752273	159752371	3022645	0	+	0.265306	[0,0.28]	chr6	281925	19	INTRON	INTRON	WTAP	ENSG00000146457.16	ENST00000358372.8:ENST00000650096.1:ENST00000621533.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	70	2	3.33854	4.34372	5.3489	0.00514751	0.00278022	0.062965	0.0488412
chr6	33399990	33400090	2847023	0	+	0.34	(0.32,0.35]	chr6	268658	2	SS3_PROX	SS3_PROX:INTRON	KIFC1	ENSG00000237649.8	ENST00000428849.7:ENST00000450504.1	protein_coding	protein_coding	protein_coding	protein_coding	2	83	2	3.05808	4.343015	5.62795	7.67153e-4	7.01392e-4	0.0254532	0.024224
chr17	28587098	28587198	6744540	0	-	0.47	(0.44,0.476]	chr17	662448	2	INTRON	INTRON	SPAG5	ENSG00000076382.17	ENST00000321765.10:ENST00000584206.1	protein_coding	protein_coding	protein_coding	protein_coding	3	92	2	2.98981	4.342945	5.69608	2.07309e-4	2.01872e-4	0.0129814	0.0125495
chr4	78820451	78820551	1981826	0	+	0.34	(0.32,0.35]	chr4	198464	3	PRIMIRNA	PRIMIRNA:INTRON	BMP2K:ENSG00000266270	ENSG00000138756.19:ENSG00000266270.1	ENST00000389010.7:ENST00000502613.3:ENST00000502871.5:ENST00000583713.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:nonsense_mediated_decay:primary_miRNA	2	83	2	2.7493	4.34282	5.93634	0.00296357	2.02056e-4	0.0500135	0.0129814
chr5	176923548	176923648	2776093	0	-	0.46	(0.44,0.476]	chr5	261526	39	INTRON	INTRON	UIMC1	ENSG00000087206.17	ENST00000377227.8:ENST00000511320.6:ENST00000506128.5:ENST00000512031.5:ENST00000510698.2:ENST00000503273.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	81	2	2.7096	4.3423300000000005	5.97506	0.00376205	1.26309e-5	0.0539118	0.00264613
chr1	50953772	50953872	452191	0	-	0.32	(0.28,0.32]	chr1	54267	954	INTRON	INTRON	FAF1	ENSG00000185104.21	ENST00000396153.7:ENST00000487898.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	87	2	2.77917	4.342295	5.90542	0.00285651	3.92169e-4	0.0494641	0.0184748
chr1	21722736	21722830	396244	0	-	0.574468	(0.57,1]	chr1	47269	6	INTRON	INTRON	USP48	ENSG00000090686.16	ENST00000400301.5:ENST00000308271.14:ENST00000374732.7:ENST00000529637.5:ENST00000487880.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	21	2	4.31277	4.342065	4.37136	0.00346264	0.00345135	0.0539802	0.0517761
chr2	96904005	96904104	1182269	0	-	0.575758	(0.57,1]	chr2	126741	9	INTRON	INTRON	FAM178B	ENSG00000168754.15	ENST00000490605.3	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	4.31277	4.342065	4.37136	0.00346264	0.00345135	0.0539802	0.0517761
chr20	57517776	57517872	7359204	0	-	0.572917	(0.57,1]	chr20	750466	16	INTRON	INTRON	CTCFL	ENSG00000124092.13	ENST00000423479.7:ENST00000429804.7:ENST00000609232.5:ENST00000608263.5:ENST00000243914.8:ENST00000371196.6:ENST00000433949.7:ENST00000502686.6:ENST00000422109.6:ENST00000426658.6:ENST00000608440.5:ENST00000422869.6:ENST00000608425.5:ENST00000539382.5:ENST00000608903.5:ENST00000432255.6:ENST00000608108.1:ENST00000608858.5:ENST00000607923.5:ENST00000608720.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	21	2	4.31277	4.342065	4.37136	0.00346264	0.00345135	0.0539802	0.0517761
chr20	58902758	58902854	7291132	0	+	0.604167	(0.57,1]	chr20	741843	1	EXON_MRNA	EXON_MRNA:INTRON	GNAS	ENSG00000087460.29	ENST00000313949.11:ENST00000371075.7:ENST00000419558.7:ENST00000657090.1:ENST00000453292.7:ENST00000306090.12:ENST00000472183.6:ENST00000462499.6:ENST00000482112.6:ENST00000663479.2:ENST00000490374.6:ENST00000467227.6:ENST00000676826.2:ENST00000371100.9:ENST00000371102.8:ENST00000464624.7:ENST00000349036.9:ENST00000488546.6:ENST00000667293.2:ENST00000481039.6:ENST00000467321.6:ENST00000477931.5:ENST00000485673.6:ENST00000470512.6:ENST00000464788.6:ENST00000469431.6:ENST00000604005.6:ENST00000478585.6:ENST00000480975.5:ENST00000480232.6:ENST00000683015.1:ENST00000461152.6:ENST00000371095.7:ENST00000265620.11:ENST00000354359.12:ENST00000371085.8:ENST00000468895.6:ENST00000682803.1:ENST00000488652.6:ENST00000476935.6:ENST00000492907.6:ENST00000603546.2:ENST00000684284.1:ENST00000682134.1:ENST00000682829.1:ENST00000487862.5:ENST00000496934.5:ENST00000683632.1:ENST00000684644.1:ENST00000684761.1:ENST00000682590.1:ENST00000684466.1:ENST00000682092.1:ENST00000682986.1:ENST00000475610.2:ENST00000682411.1:ENST00000683932.1:ENST00000682917.1:ENST00000682680.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	21	2	4.31277	4.342065	4.37136	0.00346264	0.00345135	0.0539802	0.0517761
chr6	149619317	149619416	3245827	0	-	0.575758	(0.57,1]	chr6	301582	142	INTRON	INTRON	KATNA1	ENSG00000186625.14	ENST00000335643.12:ENST00000367411.7:ENST00000335647.9:ENST00000494504.5:ENST00000470620.1:ENST00000444282.5:ENST00000420200.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	21	2	4.31277	4.342065	4.37136	0.00346264	0.00345135	0.0539802	0.0517761
chr10	5779141	5779241	4544572	0	-	0.3	(0.28,0.32]	chr10	419772	48	INTRON	INTRON	GDI2	ENSG00000057608.17	ENST00000380191.9:ENST00000447751.5:ENST00000380181.7:ENST00000456041.5	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	3.88145	4.3420000000000005	4.80255	0.0561985	0.0137406	0.18407	0.0949306
chr21	15850671	15850771	7371324	0	+	0.31	(0.28,0.32]	chr21	752304	4	INTRON	INTRON	USP25	ENSG00000155313.16	ENST00000400183.7:ENST00000285681.6:ENST00000285679.10:ENST00000351097.9:ENST00000449491.1	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	3.88145	4.3420000000000005	4.80255	0.0561985	0.0137406	0.18407	0.0949306
chr6	36091690	36091790	2853706	0	+	0.32	(0.28,0.32]	chr6	269663	147	INTRON	INTRON	MAPK14	ENSG00000112062.11	ENST00000229795.7:ENST00000468133.5:ENST00000229794.9:ENST00000310795.8:ENST00000491957.5:ENST00000496250.5:ENST00000474429.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	31	2	3.88145	4.3420000000000005	4.80255	0.0561985	0.0137406	0.18407	0.0949306
chr2	148690773	148690873	892213	0	+	0.48	(0.476,0.515]	chr2	98787	4	SS5_PROX	SS5_PROX:INTRON	EPC2	ENSG00000135999.12	ENST00000457184.5:ENST00000258484.11:ENST00000409654.5:ENST00000397424.2:ENST00000449013.1	protein_coding	protein_coding	protein_coding	protein_coding	4	105	2	2.24654	4.34194	6.43734	0.00346427	4.121e-6	0.0539802	0.00146847
chr19	23924192	23924292	7043628	0	+	0.39	(0.378,0.408]	chr19	702285	4	INTRON	INTRON	ZNF726	ENSG00000213967.12	ENST00000334589.9:ENST00000594466.6:ENST00000575986.1	protein_coding	protein_coding	protein_coding	protein_coding	1	58	2	3.56208	4.34168	5.12128	0.00251746	6.94246e-4	0.0446195	0.0240761
chr12	95484793	95484842	5193122	0	+	0.326531	(0.32,0.35]	chr12	491136	1	UTR5	UTR5:EXON_MRNA:INTRON	METAP2	ENSG00000111142.14	ENST00000535095.5:ENST00000546753.5:ENST00000261220.13:ENST00000323666.10:ENST00000553151.5:ENST00000549502.5:ENST00000550777.5:ENST00000551840.5:ENST00000549808.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	67	2	2.99125	4.34166	5.69207	0.00958447	1.29349e-4	0.0820838	0.00979769
chr16	10453921	10454021	6286964	0	+	0.4	(0.378,0.408]	chr16	602005	131	INTRON	INTRON	ATF7IP2	ENSG00000166669.14	ENST00000396559.5:ENST00000396560.6:ENST00000543967.5:ENST00000562102.6:ENST00000535850.5:ENST00000568027.5:ENST00000324570.9:ENST00000356427.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	64	2	2.78946	4.341575000000001	5.89369	0.0158859	2.33849e-5	0.101453	0.00378116
chr7	112459899	112459995	3381882	0	+	0.322917	(0.32,0.35]	chr7	316789	5	INTRON	INTRON	IFRD1	ENSG00000006652.15	ENST00000675578.1:ENST00000621379.4:ENST00000005558.8:ENST00000403825.8:ENST00000674915.1:ENST00000674887.1:ENST00000675041.1:ENST00000675717.1:ENST00000535603.5:ENST00000466459.5:ENST00000486688.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	105	2	3.13351	4.341475	5.54944	9.42646e-4	1.20676e-4	0.0280811	0.00938389
chr2	174170189	174170289	1270069	0	-	0.4	(0.378,0.408]	chr2	134282	278	INTRON	INTRON	OLA1	ENSG00000138430.16	ENST00000284719.8:ENST00000344357.9:ENST00000428402.6:ENST00000409546.5:ENST00000429575.1	protein_coding	protein_coding	protein_coding	protein_coding	1	58	2	3.17089	4.341315	5.51174	0.00357279	5.93655e-4	0.0548435	0.0225024
chr14	103208196	103208293	5825470	0	+	0.525773	(0.515,0.57]	chr14	552716	2	EXON_LNCRNA	EXON_LNCRNA	ENSG00000278071	ENSG00000278071.1	ENST00000618272.1	lncRNA	lncRNA	lncRNA	lncRNA	1	54	2	2.98677	4.34126	5.69575	0.00632549	7.34886e-5	0.0722266	0.00767614
chr2	197420832	197420928	1306880	0	-	0.354167	(0.35,0.378]	chr2	136735	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SF3B1	ENSG00000115524.17	ENST00000652026.1:ENST00000652738.1:ENST00000335508.11:ENST00000470268.2:ENST00000409915.8:ENST00000414963.2:ENST00000487698.5:ENST00000414174.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	82	2	3.32386	4.34107	5.35828	0.00135282	1.8439e-4	0.0336321	0.0118315
chr18	3453080	3453179	6867131	0	+	0.484848	(0.476,0.515]	chr18	680329	3	INTRON	INTRON	TGIF1	ENSG00000177426.22	ENST00000552383.5:ENST00000401449.5:ENST00000550958.5:ENST00000548489.6:ENST00000618001.4:ENST00000549780.5:ENST00000549253.5:ENST00000405385.7:ENST00000407501.6:ENST00000546979.5:ENST00000343820.10:ENST00000551402.1:ENST00000577543.5:ENST00000551541.5:ENST00000345133.9:ENST00000330513.10:ENST00000549546.5	protein_coding	protein_coding	protein_coding	protein_coding	6	315	2	4.28827	4.340935	4.3936	9.45918e-8	1.32308e-8	1.36519e-4	3.96167e-5
chr1	32135224	32135324	63725	0	+	0.53	(0.515,0.57]	chr1	8071	267	INTRON	INTRON	KPNA6	ENSG00000025800.14	ENST00000373625.8:ENST00000471599.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	26	2	4.08538	4.34084	4.5963	0.0253843	0.00370287	0.12011	0.0561162
chr11	68497357	68497457	4817699	0	+	0.55	(0.515,0.57]	chr11	448907	362	INTRON	INTRON	PPP6R3	ENSG00000110075.15	ENST00000530427.5:ENST00000528635.5:ENST00000529907.5:ENST00000533127.5:ENST00000534534.5:ENST00000529344.5:ENST00000524845.5:ENST00000393800.7:ENST00000265637.8:ENST00000524904.5:ENST00000393801.7:ENST00000265636.9:ENST00000529710.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	26	2	4.08538	4.34084	4.5963	0.0253843	0.00370287	0.12011	0.0561162
chr15	64697040	64697138	6205263	0	-	0.520408	(0.515,0.57]	chr15	591843	6	INTRON	INTRON	OAZ2	ENSG00000180304.14	ENST00000326005.10:ENST00000560258.6:ENST00000559753.1:ENST00000560837.5:ENST00000559912.2:ENST00000560781.6:ENST00000559665.6:ENST00000559555.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	26	2	4.08538	4.34084	4.5963	0.0253843	0.00370287	0.12011	0.0561162
chr20	62257971	62258068	7298381	0	+	0.556701	(0.515,0.57]	chr20	742399	14	INTRON	INTRON	OSBPL2	ENSG00000130703.17	ENST00000618509.4:ENST00000622332.4:ENST00000439951.6:ENST00000644535.1:ENST00000358053.3:ENST00000313733.9:ENST00000642957.1:ENST00000645520.1:ENST00000642932.1:ENST00000642516.1:ENST00000643174.1:ENST00000644775.1:ENST00000645442.1:ENST00000646968.1:ENST00000646834.1:ENST00000643412.1:ENST00000645594.1:ENST00000645426.1:ENST00000644702.1:ENST00000644189.1:ENST00000643981.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	26	2	4.08538	4.34084	4.5963	0.0253843	0.00370287	0.12011	0.0561162
chr5	151787994	151788094	2521961	0	+	0.57	(0.515,0.57]	chr5	241303	2	SS5_PROX	SS5_PROX:INTRON	G3BP1	ENSG00000145907.16	ENST00000523519.5:ENST00000520578.6:ENST00000678070.1:ENST00000678964.1:ENST00000678925.1:ENST00000394123.7:ENST00000676978.1:ENST00000679289.1:ENST00000677493.1:ENST00000676644.1:ENST00000677757.1:ENST00000522761.6:ENST00000677909.1:ENST00000676827.1:ENST00000520177.6:ENST00000676634.1:ENST00000678854.1:ENST00000677602.1:ENST00000519832.1:ENST00000676911.1:ENST00000356245.8:ENST00000678646.1:ENST00000677381.1:ENST00000678904.1:ENST00000678910.1:ENST00000678101.1:ENST00000677105.1:ENST00000676813.1:ENST00000522367.6:ENST00000517947.5:ENST00000507878.7:ENST00000678369.1:ENST00000677433.1:ENST00000678564.1:ENST00000677252.1:ENST00000677923.1:ENST00000677323.1:ENST00000522666.1:ENST00000679057.1:ENST00000677146.1:ENST00000677126.1:ENST00000678027.1:ENST00000678209.1:ENST00000678153.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	26	2	4.08538	4.34084	4.5963	0.0253843	0.00370287	0.12011	0.0561162
chr9	137676345	137676426	4224057	0	+	0.567901	(0.515,0.57]	chr9	388195	4	UTR5	UTR5:EXON_MRNA:INTRON	EHMT1	ENSG00000181090.21	ENST00000462484.5:ENST00000371394.6:ENST00000630754.2:ENST00000460843.6:ENST00000626216.2:ENST00000629335.2:ENST00000637335.1:ENST00000636376.1:ENST00000637655.1:ENST00000636027.1:ENST00000492232.5:ENST00000460486.3:ENST00000636081.1:ENST00000637161.1:ENST00000629417.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	26	2	4.08538	4.34084	4.5963	0.0253843	0.00370287	0.12011	0.0561162
chr1	65041179	65041279	475300	0	-	0.54	(0.515,0.57]	chr1	57235	457	INTRON	INTRON	JAK1	ENSG00000162434.13	ENST00000672434.1:ENST00000671954.1:ENST00000673502.1:ENST00000672751.1:ENST00000672099.1	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.17037	4.340185	4.51	0.0139194	0.00809449	0.10247	0.0766625
chr16	74596371	74596471	6525225	0	-	0.53	(0.515,0.57]	chr16	631842	332	INTRON	INTRON	GLG1	ENSG00000090863.12	ENST00000205061.9:ENST00000422840.7:ENST00000447066.6:ENST00000562090.5:ENST00000567951.5:ENST00000627032.2:ENST00000565260.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	26	2	4.17037	4.340185	4.51	0.0139194	0.00809449	0.10247	0.0766625
chr18	41977612	41977711	6897676	0	+	0.535354	(0.515,0.57]	chr18	683380	63	INTRON	INTRON	PIK3C3	ENSG00000078142.14	ENST00000262039.9:ENST00000398870.7:ENST00000591011.1:ENST00000589550.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	26	2	4.17037	4.340185	4.51	0.0139194	0.00809449	0.10247	0.0766625
chr3	14478165	14478265	1370170	0	+	0.56	(0.515,0.57]	chr3	144386	3	SS3_PROX	SS3_PROX:INTRON	SLC6A6	ENSG00000131389.18	ENST00000613060.4:ENST00000618278.4:ENST00000610642.4:ENST00000649500.1:ENST00000622186.5:ENST00000452151.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	26	2	4.17037	4.340185	4.51	0.0139194	0.00809449	0.10247	0.0766625
chr3	15322631	15322730	1621071	0	-	0.535354	(0.515,0.57]	chr3	167628	180	INTRON	INTRON	SH3BP5	ENSG00000131370.16	ENST00000383791.8:ENST00000412806.1:ENST00000426925.5:ENST00000408919.7:ENST00000450625.1:ENST00000465894.6:ENST00000459627.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	26	2	4.17037	4.340185	4.51	0.0139194	0.00809449	0.10247	0.0766625
chr3	197236158	197236258	1902885	0	-	0.53	(0.515,0.57]	chr3	190659	99	INTRON	INTRON	DLG1	ENSG00000075711.21	ENST00000667157.1:ENST00000346964.6:ENST00000663148.1:ENST00000655488.1:ENST00000357674.9:ENST00000671185.1:ENST00000658701.1:ENST00000667104.1:ENST00000661336.1:ENST00000669565.1:ENST00000670455.1:ENST00000656087.1:ENST00000670366.1:ENST00000661453.1:ENST00000665728.1:ENST00000664564.1:ENST00000660432.1:ENST00000660898.1:ENST00000657381.1:ENST00000659221.1:ENST00000654737.1:ENST00000669332.1:ENST00000659716.1:ENST00000664991.1:ENST00000419354.5:ENST00000661440.1:ENST00000667971.1:ENST00000670935.1:ENST00000666007.1:ENST00000661229.1:ENST00000661013.1:ENST00000436682.6:ENST00000662727.1:ENST00000422288.6:ENST00000448528.6:ENST00000656944.1:ENST00000392382.6:ENST00000450955.5:ENST00000658155.1:ENST00000669714.1:ENST00000654733.1:ENST00000419227.5:ENST00000392381.7:ENST00000471733.5:ENST00000419553.6:ENST00000661808.1:ENST00000453607.5:ENST00000456699.6:ENST00000392380.6:ENST00000485409.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	26	2	4.17037	4.340185	4.51	0.0139194	0.00809449	0.10247	0.0766625
chr4	139328774	139328874	2049964	0	+	0.57	(0.515,0.57]	chr4	203286	262	INTRON	INTRON	NAA15	ENSG00000164134.13	ENST00000296543.10:ENST00000398947.1:ENST00000482087.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	26	2	4.17037	4.340185	4.51	0.0139194	0.00809449	0.10247	0.0766625
chr6	2955856	2955949	3047563	0	-	0.526882	(0.515,0.57]	chr6	283568	3	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	SERPINB6	ENSG00000124570.21	ENST00000643098.1:ENST00000380546.7:ENST00000380539.7:ENST00000380529.5:ENST00000380524.5:ENST00000643314.1:ENST00000646722.1:ENST00000649845.1:ENST00000644178.1:ENST00000612421.3:ENST00000647157.1:ENST00000644697.1:ENST00000616722.4:ENST00000642543.1:ENST00000644388.1:ENST00000380520.6:ENST00000645580.1:ENST00000644693.1:ENST00000644828.1:ENST00000646775.1:ENST00000645421.1:ENST00000643227.1:ENST00000646688.1:ENST00000644777.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	26	2	4.17037	4.340185	4.51	0.0139194	0.00809449	0.10247	0.0766625
chr9	131486682	131486778	4217928	0	+	0.552083	(0.515,0.57]	chr9	386861	1	SS3_PROX	SS3_PROX:INTRON	PRRC2B	ENSG00000288701.1	ENST00000684596.1:ENST00000683519.1:ENST00000682501.1:ENST00000682662.1	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.17037	4.340185	4.51	0.0139194	0.00809449	0.10247	0.0766625
chr1	90987767	90987866	502185	0	-	0.383838	(0.378,0.408]	chr1	59504	50	INTRON	INTRON	ZNF644	ENSG00000122482.22	ENST00000370440.5:ENST00000337393.10:ENST00000347275.9:ENST00000361321.5:ENST00000467231.5:ENST00000498303.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	28	2	3.98867	4.34018	4.69169	0.0507	0.00432302	0.156383	0.0599409
chr1	226181791	226181891	647009	0	-	0.38	(0.378,0.408]	chr1	76667	154	INTRON	INTRON	ACBD3	ENSG00000182827.9	ENST00000366812.6	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	3.98867	4.34018	4.69169	0.0507	0.00432302	0.156383	0.0599409
chr20	4009850	4009950	7309351	0	-	0.4	(0.378,0.408]	chr20	744300	351	INTRON	INTRON	RNF24	ENSG00000101236.17	ENST00000336095.10:ENST00000358395.11:ENST00000545616.2	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	3.98867	4.34018	4.69169	0.0507	0.00432302	0.156383	0.0599409
chr3	125340608	125340708	1806764	0	-	0.4	(0.378,0.408]	chr3	181470	13	INTRON	INTRON	ZNF148	ENSG00000163848.20	ENST00000360647.9:ENST00000468369.5:ENST00000484491.5:ENST00000492394.5:ENST00000485866.5:ENST00000465763.5:ENST00000495019.5:ENST00000471196.1	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	3.98867	4.34018	4.69169	0.0507	0.00432302	0.156383	0.0599409
chr4	70838270	70838368	2155812	0	-	0.387755	(0.378,0.408]	chr4	212406	16	INTRON	INTRON	GRSF1	ENSG00000132463.15	ENST00000254799.11:ENST00000505068.5:ENST00000499044.6:ENST00000502323.5:ENST00000514161.5:ENST00000508091.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	28	2	3.98867	4.34018	4.69169	0.0507	0.00432302	0.156383	0.0599409
chr5	19024101	19024201	2569303	0	-	0.38	(0.378,0.408]	chr5	246196	575	INTRON	INTRON	ENSG00000249174	ENSG00000249174.1	ENST00000504827.1	lncRNA	lncRNA	lncRNA	lncRNA	0	28	2	3.98867	4.34018	4.69169	0.0507	0.00432302	0.156383	0.0599409
chr11	105236688	105236788	5027585	0	-	0.33	(0.32,0.35]	chr11	474003	760	INTRON	INTRON	CARD18	ENSG00000255501.3	ENST00000649856.1:ENST00000528811.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	30	2	3.91486	4.3399350000000005	4.76501	0.0450361	0.0114287	0.163255	0.0886611
chr15	82543994	82544094	6247446	0	-	0.34	(0.32,0.35]	chr15	596179	9	UTR3	UTR3:EXON_MRNA	CPEB1	ENSG00000214575.10	ENST00000684509.1:ENST00000618698.4:ENST00000614918.4:ENST00000611031.4:ENST00000617958.4:ENST00000618449.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	30	2	3.91486	4.3399350000000005	4.76501	0.0450361	0.0114287	0.163255	0.0886611
chr2	58229136	58229233	1126636	0	-	0.268041	[0,0.28]	chr2	120958	19	UTR3	UTR3:EXON_MRNA:INTRON	FANCL	ENSG00000115392.13	ENST00000696400.1:ENST00000403295.8:ENST00000696492.1:ENST00000427708.7:ENST00000696314.1:ENST00000696315.1:ENST00000696454.1:ENST00000696508.1:ENST00000696548.1:ENST00000696542.1:ENST00000696319.1:ENST00000403676.6:ENST00000696433.1:ENST00000696434.1:ENST00000696499.1:ENST00000696564.1:ENST00000402135.8:ENST00000696546.1:ENST00000233741.9:ENST00000696316.1:ENST00000696378.1:ENST00000696435.1:ENST00000696493.1:ENST00000696543.1:ENST00000696544.1:ENST00000696545.1:ENST00000696565.1:ENST00000696620.1:ENST00000696621.1:ENST00000696635.1:ENST00000696364.1:ENST00000696634.1:ENST00000696317.1:ENST00000696622.1:ENST00000696467.1:ENST00000696547.1:ENST00000449070.6:ENST00000696305.1:ENST00000417361.2:ENST00000696338.1:ENST00000696361.1:ENST00000696318.1:ENST00000696371.1:ENST00000696409.1:ENST00000696410.1:ENST00000696455.1:ENST00000696468.1:ENST00000696527.1:ENST00000696567.1:ENST00000696324.1:ENST00000696566.1:ENST00000696623.1:ENST00000446381.6:ENST00000696469.1:ENST00000696624.1:ENST00000696411.1:ENST00000470506.2:ENST00000696358.1:ENST00000696373.1:ENST00000696394.1:ENST00000696320.1:ENST00000696395.1:ENST00000696341.1:ENST00000696340.1:ENST00000696374.1:ENST00000696342.1:ENST00000696325.1:ENST00000696399.1:ENST00000696398.1:ENST00000696306.1:ENST00000696344.1:ENST00000696362.1:ENST00000696528.1:ENST00000696326.1:ENST00000696625.1:ENST00000696510.1:ENST00000696438.1:ENST00000696496.1:ENST00000696509.1:ENST00000696569.1:ENST00000696457.1:ENST00000696458.1:ENST00000696473.1:ENST00000696495.1:ENST00000696415.1:ENST00000696472.1:ENST00000696459.1:ENST00000696416.1:ENST00000696530.1:ENST00000696460.1:ENST00000696570.1:ENST00000696531.1:ENST00000696307.1:ENST00000696345.1:ENST00000696377.1:ENST00000696417.1:ENST00000696594.1:ENST00000696595.1:ENST00000696379.1:ENST00000696346.1:ENST00000696380.1:ENST00000696347.1:ENST00000696461.1:ENST00000696596.1:ENST00000696549.1:ENST00000696597.1:ENST00000696550.1:ENST00000696598.1:ENST00000696321.1:ENST00000696476.1:ENST00000696477.1:ENST00000696511.1:ENST00000481670.3:ENST00000696403.1:ENST00000696551.1:ENST00000696308.1:ENST00000696418.1:ENST00000696404.1:ENST00000696478.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	70	2	3.3753	4.33977	5.30424	0.00584781	0.00242466	0.0667594	0.0454587
chr1	35979944	35980043	71639	0	+	0.272727	[0,0.28]	chr1	9158	61	INTRON	INTRON	AGO3	ENSG00000126070.20	ENST00000324350.9:ENST00000397828.3:ENST00000634486.1:ENST00000373191.9:ENST00000246314.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	30	2	4.29536	4.33956	4.38376	0.0590175	0.0258536	0.167915	0.133676
chr1	51504404	51504504	454209	0	-	0.24	[0,0.28]	chr1	54447	227	INTRON	INTRON	EPS15	ENSG00000085832.17	ENST00000371733.8:ENST00000371730.6:ENST00000371727.5:ENST00000471391.1:ENST00000465467.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	30	2	4.29536	4.33956	4.38376	0.0590175	0.0258536	0.167915	0.133676
chr1	70170577	70170676	479539	0	-	0.262626	[0,0.28]	chr1	57643	108	INTRON	INTRON	LRRC40	ENSG00000066557.6	ENST00000370952.4	protein_coding	protein_coding	protein_coding	protein_coding	0	30	2	4.29536	4.33956	4.38376	0.0590175	0.0258536	0.167915	0.133676
chr1	202778493	202778593	620451	0	-	0.24	[0,0.28]	chr1	73670	10	INTRON	INTRON	KDM5B	ENSG00000117139.18	ENST00000367265.9:ENST00000648338.1:ENST00000649542.1:ENST00000647757.1:ENST00000367264.7:ENST00000648473.1:ENST00000650569.1:ENST00000648056.1:ENST00000649770.1:ENST00000648469.1:ENST00000650417.1:ENST00000235790.9:ENST00000648738.1:ENST00000648958.1:ENST00000602511.1:ENST00000650368.1:ENST00000649200.1:ENST00000648354.1:ENST00000650493.1:ENST00000470573.5:ENST00000467487.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	30	2	4.29536	4.33956	4.38376	0.0590175	0.0258536	0.167915	0.133676
chr1	224309640	224309738	644710	0	-	0.255102	[0,0.28]	chr1	76178	10	INTRON	INTRON	NVL	ENSG00000143748.18	ENST00000391875.6:ENST00000469968.5:ENST00000482491.5:ENST00000281701.11:ENST00000469075.5:ENST00000340871.8:ENST00000467882.5:ENST00000492281.5:ENST00000488718.5:ENST00000436927.5:ENST00000470989.5:ENST00000470903.5:ENST00000461466.5:ENST00000498767.1:ENST00000461546.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	30	2	4.29536	4.33956	4.38376	0.0590175	0.0258536	0.167915	0.133676
chr11	3891238	3891338	4723820	0	+	0.27	[0,0.28]	chr11	437134	27	INTRON	INTRON	STIM1	ENSG00000167323.12	ENST00000525403.5:ENST00000526596.2:ENST00000300737.8:ENST00000616714.4:ENST00000527651.5:ENST00000532610.5:ENST00000532919.5:ENST00000530554.5:ENST00000524822.5	protein_coding	protein_coding	protein_coding	protein_coding	0	30	2	4.29536	4.33956	4.38376	0.0590175	0.0258536	0.167915	0.133676
chr14	23096490	23096583	5656668	0	+	0.225806	[0,0.28]	chr14	539404	5	INTRON	INTRON	C14orf119	ENSG00000179933.6	ENST00000319074.6:ENST00000554203.1	protein_coding	protein_coding	protein_coding	protein_coding	0	30	2	4.29536	4.33956	4.38376	0.0590175	0.0258536	0.167915	0.133676
chr15	28756006	28756106	5989106	0	+	0.25	[0,0.28]	chr15	569461	13	EXON_LNCRNA	EXON_LNCRNA	WHAMMP2	ENSG00000248334.6	ENST00000512149.3	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	30	2	4.29536	4.33956	4.38376	0.0590175	0.0258536	0.167915	0.133676
chr15	89609846	89609945	6097458	0	+	0.252525	[0,0.28]	chr15	580351	5	INTRON	INTRON	TICRR	ENSG00000140534.14	ENST00000268138.12:ENST00000560985.5	protein_coding	protein_coding	protein_coding	protein_coding	0	30	2	4.29536	4.33956	4.38376	0.0590175	0.0258536	0.167915	0.133676
chr2	38588556	38588655	1099633	0	-	0.272727	[0,0.28]	chr2	117951	23	INTRON	INTRON	HNRNPLL	ENSG00000143889.16	ENST00000449105.8:ENST00000409636.5:ENST00000358367.8:ENST00000608859.5:ENST00000378915.7:ENST00000272249.7:ENST00000409328.5:ENST00000410076.5:ENST00000425682.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	30	2	4.29536	4.33956	4.38376	0.0590175	0.0258536	0.167915	0.133676
chr3	11322469	11322569	1364901	0	+	0.22	[0,0.28]	chr3	143872	66	INTRON	INTRON	ATG7	ENSG00000197548.13	ENST00000693202.1:ENST00000435760.6:ENST00000685771.1:ENST00000354449.7:ENST00000354956.9:ENST00000446450.6:ENST00000488924.5:ENST00000424071.5:ENST00000434066.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	30	2	4.29536	4.33956	4.38376	0.0590175	0.0258536	0.167915	0.133676
chr4	48835369	48835468	1958258	0	+	0.242424	[0,0.28]	chr4	196218	15	INTRON	INTRON	OCIAD1	ENSG00000109180.15	ENST00000504654.5:ENST00000509122.5:ENST00000505922.6:ENST00000509664.5:ENST00000514981.5:ENST00000512981.5:ENST00000507210.5:ENST00000508996.5:ENST00000396448.6:ENST00000512236.5:ENST00000509164.5:ENST00000381473.7:ENST00000511102.5:ENST00000264312.12:ENST00000444354.6:ENST00000509963.5:ENST00000509246.5:ENST00000506801.5:ENST00000503016.5:ENST00000510824.5:ENST00000507546.5:ENST00000513641.5:ENST00000425583.6:ENST00000508293.5:ENST00000513391.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	30	2	4.29536	4.33956	4.38376	0.0590175	0.0258536	0.167915	0.133676
chr4	129033501	129033601	2240680	0	-	0.19	[0,0.28]	chr4	219291	293	INTRON	INTRON	SCLT1	ENSG00000151466.12	ENST00000651532.1:ENST00000281142.10:ENST00000503215.5:ENST00000439369.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	30	2	4.29536	4.33956	4.38376	0.0590175	0.0258536	0.167915	0.133676
chr5	62537032	62537108	2364277	0	+	0.276316	[0,0.28]	chr5	227984	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	IPO11	ENSG00000086200.17	ENST00000424533.5:ENST00000325324.11:ENST00000409296.7:ENST00000511713.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	30	2	4.29536	4.33956	4.38376	0.0590175	0.0258536	0.167915	0.133676
chr7	110856498	110856598	3617042	0	-	0.26	[0,0.28]	chr7	337078	1308	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000487733.5:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	30	2	4.29536	4.33956	4.38376	0.0590175	0.0258536	0.167915	0.133676
chr7	127862914	127863014	3404521	0	+	0.26	[0,0.28]	chr7	318146	181	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000468166.5:ENST00000465900.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	30	2	4.29536	4.33956	4.38376	0.0590175	0.0258536	0.167915	0.133676
chr8	27358363	27358463	3720113	0	+	0.25	[0,0.28]	chr8	345640	311	INTRON	INTRON	PTK2B	ENSG00000120899.18	ENST00000397501.5:ENST00000522338.5:ENST00000521164.5:ENST00000346049.10:ENST00000420218.3:ENST00000522517.5	protein_coding	protein_coding	protein_coding	protein_coding	0	30	2	4.29536	4.33956	4.38376	0.0590175	0.0258536	0.167915	0.133676
chr8	105340612	105340712	3837461	0	+	0.23	[0,0.28]	chr8	354033	205	INTRON	INTRON	ZFPM2	ENSG00000169946.14	ENST00000518180.1:ENST00000407775.7:ENST00000520492.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	30	2	4.29536	4.33956	4.38376	0.0590175	0.0258536	0.167915	0.133676
chr8	140976962	140977061	4079834	0	-	0.222222	[0,0.28]	chr8	370582	223	INTRON	INTRON	PTK2	ENSG00000169398.20	ENST00000696786.1:ENST00000522684.5:ENST00000395218.3:ENST00000521059.5:ENST00000519993.5:ENST00000340930.7:ENST00000524357.5:ENST00000521791.5:ENST00000523067.5:ENST00000520828.5:ENST00000519881.5:ENST00000520892.5:ENST00000523803.5:ENST00000521907.5:ENST00000517453.5:ENST00000520045.5:ENST00000521332.5:ENST00000524040.5:ENST00000523679.1:ENST00000524257.5:ENST00000523797.1:ENST00000519635.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	30	2	4.29536	4.33956	4.38376	0.0590175	0.0258536	0.167915	0.133676
chr9	92262644	92262732	4287017	0	-	0.261364	[0,0.28]	chr9	394173	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	IARS1	ENSG00000196305.19	ENST00000375643.7:ENST00000443024.7:ENST00000447699.7:ENST00000683537.1:ENST00000684726.1:ENST00000683192.1:ENST00000683565.1:ENST00000682756.1:ENST00000684542.1:ENST00000683793.1:ENST00000683817.1:ENST00000682141.1:ENST00000682893.1:ENST00000684557.1:ENST00000498025.2:ENST00000682156.1:ENST00000627121.3:ENST00000683469.1:ENST00000683495.1:ENST00000682578.1:ENST00000682533.1:ENST00000472894.2:ENST00000684757.1:ENST00000684445.1:ENST00000683376.1:ENST00000683679.1:ENST00000683119.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	30	2	4.29536	4.33956	4.38376	0.0590175	0.0258536	0.167915	0.133676
chrX	121227422	121227522	7715464	0	+	0.27	[0,0.28]	chrX	789390	412	INTRON	INTRON	ENSG00000286163	ENSG00000286163.1	ENST00000651788.1	lncRNA	lncRNA	lncRNA	lncRNA	0	30	2	4.29536	4.33956	4.38376	0.0590175	0.0258536	0.167915	0.133676
chr5	66168266	66168365	2372739	0	+	0.262626	[0,0.28]	chr5	228682	35	EXON_MRNA	EXON_MRNA:INTRON	SREK1	ENSG00000153914.16	ENST00000334121.11:ENST00000520953.5:ENST00000522912.5:ENST00000524111.5:ENST00000380918.7:ENST00000284041.7:ENST00000520580.5:ENST00000519259.5:ENST00000523655.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	94	2	2.8486	4.339545	5.83049	0.00254189	0.00112548	0.0465056	0.0306963
chr16	23846579	23846679	6323864	0	+	0.36	(0.35,0.378]	chr16	605693	88	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000498058.1:ENST00000645517.1:ENST00000498739.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	64	2	3.03814	4.3393999999999995	5.64066	0.00767003	1.14247e-4	0.075364	0.0091431
chr2	53953874	53953974	1120407	0	-	0.36	(0.35,0.378]	chr2	120102	42	INTRON	INTRON	PSME4	ENSG00000068878.15	ENST00000404125.6:ENST00000389993.7:ENST00000481518.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	64	2	3.03814	4.3393999999999995	5.64066	0.00767003	1.14247e-4	0.075364	0.0091431
chr12	93487741	93487819	5189458	0	+	0.333333	(0.32,0.35]	chr12	490852	2	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MRPL42	ENSG00000198015.14	ENST00000549982.6:ENST00000552217.6:ENST00000393128.8:ENST00000552326.5:ENST00000358678.7:ENST00000547098.5:ENST00000551396.5:ENST00000549561.6:ENST00000548545.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	140	2	2.23714	4.33927	6.4414	0.00333584	2.37455e-6	0.0512081	9.7333e-4
chr1	227298605	227298705	651522	0	-	0.37	(0.35,0.378]	chr1	77110	335	INTRON	INTRON	CDC42BPA	ENSG00000143776.20	ENST00000366766.8:ENST00000366769.7:ENST00000334218.9:ENST00000366767.7:ENST00000366764.8:ENST00000478573.6:ENST00000682551.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	64	2	3.21456	4.33925	5.46394	0.00420814	2.60035e-4	0.0572185	0.014326
chr6	147267667	147267766	2989345	0	+	0.282828	(0.28,0.32]	chr6	280031	1	INTRON	INTRON	STXBP5	ENSG00000164506.15	ENST00000321680.11:ENST00000367481.7:ENST00000546097.5:ENST00000367480.7	protein_coding	protein_coding	protein_coding	protein_coding	2	154	2	4.16508	4.33925	4.51342	1.18454e-4	7.63487e-6	0.00986214	0.00197283
chr1	10465898	10465997	376404	0	-	0.393939	(0.378,0.408]	chr1	43898	19	INTRON	INTRON	DFFA	ENSG00000160049.12	ENST00000377038.8:ENST00000476658.5:ENST00000377036.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	28	2	4.09379	4.33903	4.58427	0.023912	0.0128325	0.129075	0.0926667
chr13	48235856	48235955	5483643	0	+	0.393939	(0.378,0.408]	chr13	525389	14	INTRON	INTRON	ITM2B	ENSG00000136156.15	ENST00000649266.1:ENST00000378549.5:ENST00000647800.2:ENST00000650479.1:ENST00000649452.1:ENST00000648898.1:ENST00000648586.1:ENST00000648312.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	28	2	4.09379	4.33903	4.58427	0.023912	0.0128325	0.129075	0.0926667
chr13	59773488	59773588	5600438	0	-	0.39	(0.378,0.408]	chr13	535391	226	INTRON	INTRON	DIAPH3	ENSG00000139734.19	ENST00000400324.9:ENST00000377908.6:ENST00000400319.5:ENST00000400320.5	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.09379	4.33903	4.58427	0.023912	0.0128325	0.129075	0.0926667
chr14	27574137	27574237	5848593	0	-	0.4	(0.378,0.408]	chr14	556260	2516	INTRON	INTRON	ENSG00000258932	ENSG00000258932.5	ENST00000553392.5:ENST00000554904.5:ENST00000556890.1:ENST00000555797.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	0	28	2	4.09379	4.33903	4.58427	0.023912	0.0128325	0.129075	0.0926667
chr3	47474423	47474523	1682844	0	-	0.38	(0.378,0.408]	chr3	171885	17	INTRON	INTRON	SCAP	ENSG00000114650.21	ENST00000265565.10:ENST00000441517.6:ENST00000320017.10:ENST00000416208.5:ENST00000416847.5:ENST00000448217.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	28	2	4.09379	4.33903	4.58427	0.023912	0.0128325	0.129075	0.0926667
chr5	37361413	37361512	2602670	0	-	0.393939	(0.378,0.408]	chr5	247515	29	INTRON	INTRON	NUP155	ENSG00000113569.16	ENST00000231498.8:ENST00000381843.6:ENST00000513532.1	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.09379	4.33903	4.58427	0.023912	0.0128325	0.129075	0.0926667
chr7	66938053	66938153	3326402	0	+	0.38	(0.378,0.408]	chr7	309339	68	INTRON	INTRON	TMEM248	ENSG00000106609.16	ENST00000341567.8:ENST00000607045.5:ENST00000433271.6:ENST00000413593.5:ENST00000424964.6:ENST00000418375.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	28	2	4.09379	4.33903	4.58427	0.023912	0.0128325	0.129075	0.0926667
chr8	70374435	70374535	3966540	0	-	0.4	(0.378,0.408]	chr8	363897	773	INTRON	INTRON	NCOA2	ENSG00000140396.13	ENST00000452400.7:ENST00000518287.6:ENST00000520416.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	28	2	4.09379	4.33903	4.58427	0.023912	0.0128325	0.129075	0.0926667
chr13	95234684	95234759	5639205	0	-	0.493333	(0.476,0.515]	chr13	537154	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	ABCC4	ENSG00000125257.16	ENST00000645237.2:ENST00000643051.1:ENST00000643842.1:ENST00000646439.1:ENST00000643816.1:ENST00000536256.3:ENST00000643556.1:ENST00000629385.1:ENST00000642524.1:ENST00000645532.1:ENST00000644471.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	225	2	3.79402	4.33891	4.8838	7.20527e-7	2.77847e-7	5.12105e-4	2.61881e-4
chr5	98877157	98877257	2683524	0	-	0.32	(0.28,0.32]	chr5	253840	2	INTRON	INTRON	CHD1	ENSG00000153922.11	ENST00000614616.5:ENST00000284049.7	protein_coding	protein_coding	protein_coding	protein_coding	1	68	2	3.74806	4.338675	4.92929	0.0098607	4.11943e-4	0.0838128	0.0181365
chr7	75481818	75481917	3558888	0	-	0.333333	(0.32,0.35]	chr7	331555	63	INTRON	INTRON	POM121C:ENSG00000242073	ENSG00000272391.6:ENSG00000242073.2	ENST00000615331.5:ENST00000398379.2:ENST00000415277.2	protein_coding	protein_coding	protein_coding:transcribed_unprocessed_pseudogene	protein_coding:transcribed_unprocessed_pseudogene	6	138	2	2.31602	4.33845	6.36088	0.00100216	2.93539e-5	0.029173	0.00449807
chr1	8487676	8487776	370466	0	-	0.32	(0.28,0.32]	chr1	43466	213	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000377464.5:ENST00000400907.6:ENST00000656437.1:ENST00000464972.5:ENST00000659924.1:ENST00000480342.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	29	2	4.2432	4.3383	4.4334	0.0479043	0.0163355	0.153019	0.109464
chr1	113783401	113783501	525655	0	-	0.29	(0.28,0.32]	chr1	61851	52	INTRON	INTRON	RSBN1	ENSG00000081019.14	ENST00000261441.9:ENST00000612242.4:ENST00000476412.5:ENST00000615321.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	29	2	4.2432	4.3383	4.4334	0.0479043	0.0163355	0.153019	0.109464
chr1	222583332	222583430	641804	0	-	0.316327	(0.28,0.32]	chr1	75732	31	INTRON	INTRON	TAF1A	ENSG00000143498.18	ENST00000350027.8:ENST00000366890.5:ENST00000352967.9:ENST00000391883.2:ENST00000487009.5:ENST00000465263.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	29	2	4.2432	4.3383	4.4334	0.0479043	0.0163355	0.153019	0.109464
chr10	42805613	42805713	4428263	0	+	0.32	(0.28,0.32]	chr10	408133	30	INTRON	INTRON	BMS1	ENSG00000165733.8	ENST00000374518.6	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	4.2432	4.3383	4.4334	0.0479043	0.0163355	0.153019	0.109464
chr10	92508205	92508282	4664738	0	-	0.298701	(0.28,0.32]	chr10	429838	1	EXON_MRNA	EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	IDE	ENSG00000119912.18	ENST00000265986.11:ENST00000679312.1:ENST00000650060.1:ENST00000679089.1:ENST00000677569.1:ENST00000677096.1:ENST00000679222.1:ENST00000676540.1:ENST00000678026.1:ENST00000676626.1:ENST00000679069.1:ENST00000678977.1:ENST00000679232.1:ENST00000678844.1:ENST00000679174.1:ENST00000678673.1:ENST00000676816.1:ENST00000678715.1:ENST00000678458.1:ENST00000677193.1:ENST00000679304.1:ENST00000677079.1:ENST00000677434.1:ENST00000678248.1:ENST00000478361.6:ENST00000677978.1:ENST00000677196.1:ENST00000677953.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	29	2	4.2432	4.3383	4.4334	0.0479043	0.0163355	0.153019	0.109464
chr11	120390270	120390370	4876739	0	+	0.31	(0.28,0.32]	chr11	455802	44	INTRON	INTRON	ARHGEF12	ENSG00000196914.9	ENST00000397843.7:ENST00000356641.7:ENST00000532993.5:ENST00000529970.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	29	2	4.2432	4.3383	4.4334	0.0479043	0.0163355	0.153019	0.109464
chr15	58802577	58802677	6037052	0	+	0.31	(0.28,0.32]	chr15	574916	2	SS5_PROX	SS5_PROX:INTRON	MINDY2	ENSG00000128923.11	ENST00000316848.9:ENST00000560289.5:ENST00000559228.6:ENST00000450403.3:ENST00000559745.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	29	2	4.2432	4.3383	4.4334	0.0479043	0.0163355	0.153019	0.109464
chr19	53441395	53441495	7097201	0	+	0.32	(0.28,0.32]	chr19	711581	2	SS3_PROX	SS3_PROX:INTRON	ZNF761:TPM3P9	ENSG00000160336.17:ENSG00000241015.2	ENST00000651864.1:ENST00000684525.1:ENST00000424846.3:ENST00000610928.4	protein_coding	protein_coding	protein_coding:transcribed_processed_pseudogene	protein_coding:processed_transcript	0	29	2	4.2432	4.3383	4.4334	0.0479043	0.0163355	0.153019	0.109464
chr3	17552156	17552256	1628513	0	-	0.3	(0.28,0.32]	chr3	168211	47	INTRON	INTRON	TBC1D5	ENSG00000131374.15	ENST00000253692.11:ENST00000696125.1:ENST00000414318.2:ENST00000429383.8:ENST00000446818.6:ENST00000415814.6:ENST00000452492.6:ENST00000412981.5:ENST00000428355.5:ENST00000425944.5:ENST00000430169.5:ENST00000445294.5:ENST00000414349.5:ENST00000443499.6:ENST00000444756.5:ENST00000497531.5:ENST00000443386.5:ENST00000507877.5:ENST00000446863.5:ENST00000434420.1:ENST00000444471.5:ENST00000486224.5:ENST00000433533.5:ENST00000481396.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	29	2	4.2432	4.3383	4.4334	0.0479043	0.0163355	0.153019	0.109464
chr5	37399566	37399666	2340593	0	+	0.32	(0.28,0.32]	chr5	226227	26	INTRON	INTRON	WDR70	ENSG00000082068.9	ENST00000504564.1:ENST00000511906.5:ENST00000265107.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	29	2	4.2432	4.3383	4.4334	0.0479043	0.0163355	0.153019	0.109464
chr5	87283975	87284075	2410949	0	+	0.3	(0.28,0.32]	chr5	232377	143	INTRON	INTRON	RASA1	ENSG00000145715.15	ENST00000274376.11:ENST00000515800.6:ENST00000456692.6:ENST00000506290.1:ENST00000512763.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	29	2	4.2432	4.3383	4.4334	0.0479043	0.0163355	0.153019	0.109464
chr5	98878851	98878951	2683541	0	-	0.29	(0.28,0.32]	chr5	253840	19	INTRON	INTRON	CHD1	ENSG00000153922.11	ENST00000614616.5:ENST00000284049.7	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	4.2432	4.3383	4.4334	0.0479043	0.0163355	0.153019	0.109464
chr7	7680981	7681081	3276108	0	+	0.29	(0.28,0.32]	chr7	304695	44	INTRON	INTRON	UMAD1	ENSG00000219545.12	ENST00000493246.5:ENST00000682710.1:ENST00000463725.5:ENST00000638342.1:ENST00000636849.1:ENST00000639343.1:ENST00000639110.1:ENST00000471760.5:ENST00000482067.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	29	2	4.2432	4.3383	4.4334	0.0479043	0.0163355	0.153019	0.109464
chrX	53539274	53539368	7820332	0	-	0.308511	(0.28,0.32]	chrX	797843	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HUWE1	ENSG00000086758.16	ENST00000262854.11:ENST00000342160.7:ENST00000612484.4:ENST00000426907.5	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	4.2432	4.3383	4.4334	0.0479043	0.0163355	0.153019	0.109464
chr12	31283569	31283668	5302421	0	-	0.393939	(0.378,0.408]	chr12	504630	3	INTRON	INTRON	SINHCAF	ENSG00000139146.14	ENST00000337682.9:ENST00000539409.5:ENST00000448582.6:ENST00000454658.6:ENST00000544921.5:ENST00000542983.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	62	2	3.05502	4.33816	5.6213	0.00689519	9.58854e-5	0.0717484	0.00822887
chr12	95480636	95480735	5193077	0	+	0.282828	(0.28,0.32]	chr12	491123	41	INTRON	INTRON	METAP2	ENSG00000111142.14	ENST00000535095.5:ENST00000546753.5:ENST00000261220.13:ENST00000323666.10:ENST00000553151.5:ENST00000549502.5:ENST00000550777.5:ENST00000551840.5:ENST00000549136.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	29	2	4.33765	4.33814	4.33863	0.039714	0.0207276	0.143072	0.122348
chr14	37144082	37144182	5877728	0	-	0.32	(0.28,0.32]	chr14	558013	2687	INTRON	INTRON	SLC25A21	ENSG00000183032.12	ENST00000331299.6:ENST00000555449.5:ENST00000557611.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	29	2	4.33765	4.33814	4.33863	0.039714	0.0207276	0.143072	0.122348
chr4	103345630	103345730	2008608	0	+	0.29	(0.28,0.32]	chr4	200279	20	INTRON	INTRON	LINC02428	ENSG00000248740.7	ENST00000668077.1:ENST00000656681.1:ENST00000656104.1:ENST00000513793.5	lncRNA	lncRNA	lncRNA	lncRNA	0	29	2	4.33765	4.33814	4.33863	0.039714	0.0207276	0.143072	0.122348
chr4	105687929	105688027	2216753	0	-	0.316327	(0.28,0.32]	chr4	217307	7	INTRON	INTRON	INTS12	ENSG00000138785.16	ENST00000451321.6:ENST00000340139.10:ENST00000394735.5	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	4.33765	4.33814	4.33863	0.039714	0.0207276	0.143072	0.122348
chr5	142114330	142114430	2505577	0	+	0.29	(0.28,0.32]	chr5	239819	49	INTRON	INTRON	NDFIP1	ENSG00000131507.11	ENST00000253814.6:ENST00000509436.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	29	2	4.33765	4.33814	4.33863	0.039714	0.0207276	0.143072	0.122348
chr8	39098057	39098157	3739327	0	+	0.3	(0.28,0.32]	chr8	347595	59	INTRON	INTRON	ADAM9	ENSG00000168615.13	ENST00000678474.1:ENST00000676765.1:ENST00000676936.1:ENST00000677908.1:ENST00000677004.1:ENST00000677165.1:ENST00000481058.2:ENST00000676643.1:ENST00000676669.1:ENST00000679268.1:ENST00000677582.1:ENST00000676617.1:ENST00000677137.1:ENST00000678540.1:ENST00000677359.1:ENST00000678730.1:ENST00000487273.7:ENST00000678253.1:ENST00000676489.1:ENST00000379917.7:ENST00000468065.5:ENST00000481873.7:ENST00000676919.1:ENST00000678863.1:ENST00000484143.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	29	2	4.33765	4.33814	4.33863	0.039714	0.0207276	0.143072	0.122348
chr1	75588463	75588563	489861	0	-	0.4	(0.378,0.408]	chr1	58152	466	INTRON	INTRON	SLC44A5	ENSG00000137968.17	ENST00000370859.8:ENST00000370855.5:ENST00000469525.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	62	2	3.23708	4.338	5.43892	0.00365053	2.28412e-4	0.0535094	0.0133228
chr3	177148706	177148805	1871958	0	-	0.484848	(0.476,0.515]	chr3	187422	126	INTRON	INTRON	TBL1XR1	ENSG00000177565.18	ENST00000457928.7:ENST00000430069.5:ENST00000673974.1:ENST00000352800.10:ENST00000422442.6:ENST00000428970.5:ENST00000424913.5:ENST00000437738.5:ENST00000431421.5:ENST00000635794.1:ENST00000630796.2:ENST00000450267.5:ENST00000630833.2:ENST00000431674.5:ENST00000422066.5:ENST00000443315.5:ENST00000627825.2:ENST00000427349.5:ENST00000413084.5:ENST00000637137.1:ENST00000491623.2:ENST00000637544.1:ENST00000636187.1:ENST00000636912.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	57	2	3.13389	4.337994999999999	5.5421	0.00405473	3.56777e-4	0.0578376	0.0175154
chr5	77757307	77757407	2647044	0	-	0.5	(0.476,0.515]	chr5	251578	421	INTRON	INTRON	TBCA	ENSG00000171530.15	ENST00000380377.9:ENST00000306388.10:ENST00000520361.5:ENST00000651106.1:ENST00000518338.6:ENST00000522370.1:ENST00000520039.1	protein_coding	protein_coding	protein_coding	protein_coding	1	57	2	3.13389	4.337994999999999	5.5421	0.00405473	3.56777e-4	0.0578376	0.0175154
chr1	99863692	99863788	170244	0	+	0.479167	(0.476,0.515]	chr1	18356	9	INTRON	INTRON	AGL	ENSG00000162688.17	ENST00000361915.8:ENST00000370165.7:ENST00000370163.7:ENST00000294724.8:ENST00000361302.7:ENST00000370161.6:ENST00000637337.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	27	2	4.24501	4.33797	4.43093	0.0247713	0.00931369	0.12011	0.0855292
chr1	203804315	203804415	296767	0	+	0.51	(0.476,0.515]	chr1	34134	9	INTRON	INTRON	ZC3H11A:ZBED6	ENSG00000058673.17:ENSG00000257315.3	ENST00000367210.3:ENST00000453771.5:ENST00000432282.5:ENST00000638800.1:ENST00000367214.5:ENST00000639812.1:ENST00000367212.7:ENST00000332127.8:ENST00000550078.2:ENST00000495527.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	27	2	4.24501	4.33797	4.43093	0.0247713	0.00931369	0.12011	0.0855292
chr12	111417618	111417718	5227703	0	+	0.51	(0.476,0.515]	chr12	495487	1	SS3_PROX	SS3_PROX:INTRON	SH2B3	ENSG00000111252.11	ENST00000341259.7	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.24501	4.33797	4.43093	0.0247713	0.00931369	0.12011	0.0855292
chr12	122889487	122889583	5442512	0	-	0.510417	(0.476,0.515]	chr12	520624	10	UTR5	UTR5:EXON_MRNA:INTRON	VPS37B	ENSG00000139722.7	ENST00000267202.7:ENST00000535765.5:ENST00000371248.3	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.24501	4.33797	4.43093	0.0247713	0.00931369	0.12011	0.0855292
chr13	50228863	50228963	5492454	0	+	0.51	(0.476,0.515]	chr13	526057	41	INTRON	INTRON	DLEU1	ENSG00000176124.15	ENST00000467721.5:ENST00000468522.5:ENST00000490577.5:ENST00000491341.5:ENST00000491615.5:ENST00000463474.7:ENST00000468168.5:ENST00000476738.5:ENST00000461527.7:ENST00000486895.5:ENST00000485007.5:ENST00000475913.5:ENST00000484529.5:ENST00000473075.3:ENST00000483444.5	lncRNA	lncRNA	lncRNA	lncRNA	0	27	2	4.24501	4.33797	4.43093	0.0247713	0.00931369	0.12011	0.0855292
chr13	99217273	99217372	5524600	0	+	0.494949	(0.476,0.515]	chr13	528219	114	INTRON	INTRON	UBAC2	ENSG00000134882.16	ENST00000355700.9:ENST00000403766.8:ENST00000468067.5:ENST00000473091.5:ENST00000376440.6:ENST00000457666.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	27	2	4.24501	4.33797	4.43093	0.0247713	0.00931369	0.12011	0.0855292
chr14	71327327	71327427	5779535	0	+	0.48	(0.476,0.515]	chr14	547500	54	INTRON	INTRON	SIPA1L1	ENSG00000197555.10	ENST00000555989.5:ENST00000553453.5:ENST00000556408.5:ENST00000381232.8:ENST00000554362.5:ENST00000556780.5:ENST00000554126.5:ENST00000555652.5:ENST00000557151.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	27	2	4.24501	4.33797	4.43093	0.0247713	0.00931369	0.12011	0.0855292
chr16	1825512	1825610	6429940	0	-	0.489796	(0.476,0.515]	chr16	618313	21	INTRON	INTRON	HAGH	ENSG00000063854.13	ENST00000397356.8:ENST00000455446.6:ENST00000397353.6:ENST00000566709.5:ENST00000569339.1:ENST00000569700.5:ENST00000567190.5:ENST00000564518.5:ENST00000565097.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	27	2	4.24501	4.33797	4.43093	0.0247713	0.00931369	0.12011	0.0855292
chr16	8847623	8847723	6285165	0	+	0.5	(0.476,0.515]	chr16	601861	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	PMM2	ENSG00000140650.13	ENST00000566983.5:ENST00000683435.1:ENST00000683094.1:ENST00000566604.5:ENST00000268261.9:ENST00000683274.1:ENST00000682393.1:ENST00000566540.5:ENST00000562318.5:ENST00000570076.5:ENST00000569958.5:ENST00000565221.5:ENST00000567697.2:ENST00000562025.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	27	2	4.24501	4.33797	4.43093	0.0247713	0.00931369	0.12011	0.0855292
chr17	41992507	41992607	6770616	0	-	0.49	(0.476,0.515]	chr17	666636	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	DNAJC7	ENSG00000168259.17	ENST00000316603.12:ENST00000457167.9:ENST00000586335.2:ENST00000674306.1:ENST00000426588.7:ENST00000674355.1:ENST00000674504.1:ENST00000674472.1:ENST00000674233.1:ENST00000674166.1:ENST00000674179.1:ENST00000674481.1:ENST00000674249.1:ENST00000585866.6:ENST00000589576.6:ENST00000674214.1:ENST00000588814.5:ENST00000590774.6:ENST00000674303.1:ENST00000674453.1:ENST00000674252.1:ENST00000674287.1:ENST00000674497.1:ENST00000674411.1:ENST00000585693.2:ENST00000674337.1:ENST00000590847.2:ENST00000674485.1:ENST00000674175.1:ENST00000589810.5:ENST00000588641.6:ENST00000590348.6:ENST00000590886.7:ENST00000591153.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	27	2	4.24501	4.33797	4.43093	0.0247713	0.00931369	0.12011	0.0855292
chr19	18537300	18537400	7153076	0	-	0.48	(0.476,0.515]	chr19	722907	3	SS5_PROX	SS5_PROX:INTRON	FKBP8	ENSG00000105701.16	ENST00000597960.7:ENST00000544835.7:ENST00000222308.8:ENST00000596558.6:ENST00000608443.6:ENST00000601844.5:ENST00000596015.1:ENST00000606531.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	27	2	4.24501	4.33797	4.43093	0.0247713	0.00931369	0.12011	0.0855292
chr22	28558459	28558559	7571720	0	-	0.5	(0.476,0.515]	chr22	774287	1155	INTRON	INTRON	TTC28	ENSG00000100154.15	ENST00000397906.7	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.24501	4.33797	4.43093	0.0247713	0.00931369	0.12011	0.0855292
chr3	196422131	196422231	1899563	0	-	0.48	(0.476,0.515]	chr3	190226	60	INTRON	INTRON	UBXN7	ENSG00000163960.12	ENST00000296328.9:ENST00000429160.1:ENST00000428095.1:ENST00000381887.7:ENST00000493566.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	27	2	4.24501	4.33797	4.43093	0.0247713	0.00931369	0.12011	0.0855292
chr6	119325478	119325578	3205573	0	-	0.48	(0.476,0.515]	chr6	298328	181	INTRON	INTRON	MAN1A1	ENSG00000111885.7	ENST00000368468.4	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.24501	4.33797	4.43093	0.0247713	0.00931369	0.12011	0.0855292
chr8	144246232	144246327	3881341	0	+	0.494737	(0.476,0.515]	chr8	356790	6	INTRON	INTRON	MROH1	ENSG00000179832.18	ENST00000326134.10:ENST00000532255.5:ENST00000534366.5:ENST00000527552.5:ENST00000528919.5:ENST00000544576.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	27	2	4.24501	4.33797	4.43093	0.0247713	0.00931369	0.12011	0.0855292
chr1	36271856	36271955	73407	0	+	0.515152	(0.476,0.515]	chr1	9377	120	INTRON	INTRON	THRAP3	ENSG00000054118.15	ENST00000469141.6:ENST00000648638.1:ENST00000354618.10	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.32915	4.337815	4.34648	0.0193566	0.0124637	0.108861	0.0973643
chr1	86982636	86982735	154275	0	+	0.515152	(0.476,0.515]	chr1	16969	72	INTRON	INTRON	HS2ST1	ENSG00000153936.18	ENST00000370550.10:ENST00000370551.8:ENST00000687893.1:ENST00000693745.1:ENST00000689904.1:ENST00000690674.1:ENST00000591456.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	27	2	4.32915	4.337815	4.34648	0.0193566	0.0124637	0.108861	0.0973643
chr1	111177132	111177230	184103	0	+	0.489796	(0.476,0.515]	chr1	20442	18	INTRON	INTRON	CEPT1	ENSG00000134255.15	ENST00000545121.5:ENST00000498239.5:ENST00000357172.9:ENST00000478042.5:ENST00000473474.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	27	2	4.32915	4.337815	4.34648	0.0193566	0.0124637	0.108861	0.0973643
chr1	197128089	197128189	613515	0	-	0.48	(0.476,0.515]	chr1	72639	2	SS5_PROX	SS5_PROX:INTRON	ASPM	ENSG00000066279.19	ENST00000367408.6:ENST00000367409.9:ENST00000680265.1:ENST00000294732.11:ENST00000680710.1:ENST00000681879.1:ENST00000680112.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	27	2	4.32915	4.337815	4.34648	0.0193566	0.0124637	0.108861	0.0973643
chr11	126259415	126259513	4884179	0	+	0.5	(0.476,0.515]	chr11	456691	22	INTRON	INTRON	FAM118B	ENSG00000197798.9	ENST00000627851.2:ENST00000528985.5:ENST00000360194.8:ENST00000529731.5:ENST00000533050.6	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.32915	4.337815	4.34648	0.0193566	0.0124637	0.108861	0.0973643
chr12	120150944	120151044	5432781	0	-	0.49	(0.476,0.515]	chr12	519180	4	SS5_PROX	SS5_PROX:INTRON	GCN1	ENSG00000089154.11	ENST00000300648.7	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.32915	4.337815	4.34648	0.0193566	0.0124637	0.108861	0.0973643
chr19	32652371	32652470	7169395	0	-	0.50505	(0.476,0.515]	chr19	724470	22	INTRON	INTRON	ANKRD27	ENSG00000105186.16	ENST00000306065.9:ENST00000587352.5:ENST00000586463.5:ENST00000588700.5:ENST00000586693.7:ENST00000590519.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	27	2	4.32915	4.337815	4.34648	0.0193566	0.0124637	0.108861	0.0973643
chr20	56449998	56450098	7287834	0	+	0.49	(0.476,0.515]	chr20	741438	36	INTRON	INTRON	CASS4	ENSG00000087589.17	ENST00000360314.7:ENST00000679887.1:ENST00000434344.2:ENST00000497244.1:ENST00000679529.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	27	2	4.32915	4.337815	4.34648	0.0193566	0.0124637	0.108861	0.0973643
chr3	196817257	196817356	1596278	0	+	0.50505	(0.476,0.515]	chr3	165360	23	INTRON	INTRON	PAK2	ENSG00000180370.10	ENST00000327134.7:ENST00000426668.1	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.32915	4.337815	4.34648	0.0193566	0.0124637	0.108861	0.0973643
chr4	128826442	128826542	2044433	0	+	0.48	(0.476,0.515]	chr4	202994	96	INTRON	INTRON	JADE1	ENSG00000077684.16	ENST00000226319.11:ENST00000511647.5:ENST00000452328.6:ENST00000504089.5:ENST00000512960.5:ENST00000503785.5:ENST00000514740.1:ENST00000610919.4:ENST00000510308.5:ENST00000511925.5:ENST00000413543.6:ENST00000611140.4:ENST00000507833.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	27	2	4.32915	4.337815	4.34648	0.0193566	0.0124637	0.108861	0.0973643
chr5	98921845	98921945	2684003	0	-	0.5	(0.476,0.515]	chr5	253957	164	INTRON	INTRON	CHD1	ENSG00000153922.11	ENST00000614616.5:ENST00000284049.7	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.32915	4.337815	4.34648	0.0193566	0.0124637	0.108861	0.0973643
chr5	138359382	138359482	2494918	0	+	0.5	(0.476,0.515]	chr5	238471	60	INTRON	INTRON	KDM3B	ENSG00000120733.14	ENST00000314358.10	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.32915	4.337815	4.34648	0.0193566	0.0124637	0.108861	0.0973643
chr9	37460222	37460322	4250966	0	-	0.48	(0.476,0.515]	chr9	391483	173	INTRON	INTRON	ZBTB5	ENSG00000168795.5	ENST00000307750.5	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.32915	4.337815	4.34648	0.0193566	0.0124637	0.108861	0.0973643
chr9	120864616	120864714	4335854	0	-	0.5	(0.476,0.515]	chr9	398360	1	INTRON	INTRON	PHF19	ENSG00000119403.15	ENST00000373896.8:ENST00000419155.5:ENST00000616568.5:ENST00000487555.5:ENST00000464712.1:ENST00000453868.5:ENST00000474402.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	27	2	4.32915	4.337815	4.34648	0.0193566	0.0124637	0.108861	0.0973643
chrX	111693363	111693463	7702140	0	+	0.48	(0.476,0.515]	chrX	788221	33	INTRON	INTRON	ALG13	ENSG00000101901.12	ENST00000487141.5:ENST00000394780.8:ENST00000251943.8:ENST00000610588.4:ENST00000621367.4:ENST00000622997.3:ENST00000624161.3:ENST00000636363.1:ENST00000624881.3:ENST00000495283.5:ENST00000486353.5:ENST00000623144.3:ENST00000470971.5:ENST00000623148.3:ENST00000471924.5:ENST00000436609.5:ENST00000470704.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	27	2	4.32915	4.337815	4.34648	0.0193566	0.0124637	0.108861	0.0973643
chr1	211819166	211819266	631292	0	-	0.44	(0.408,0.44]	chr1	74654	256	INTRON	INTRON	LPGAT1	ENSG00000123684.13	ENST00000366997.9:ENST00000366996.1	protein_coding	protein_coding	protein_coding	protein_coding	1	57	2	3.59564	4.337735	5.07983	0.00247652	5.73354e-4	0.0446195	0.0217398
chr12	31086983	31087074	5106355	0	+	0.384615	(0.378,0.408]	chr12	482198	4	INTRON	INTRON	DDX11	ENSG00000013573.17	ENST00000542838.6:ENST00000228264.10:ENST00000542129.5:ENST00000438391.6:ENST00000435753.6:ENST00000540935.5:ENST00000539049.5:ENST00000536265.5:ENST00000415475.6:ENST00000545668.5:ENST00000350437.8:ENST00000535158.5:ENST00000542244.5:ENST00000544652.1:ENST00000538345.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	60	2	2.92665	4.33726	5.74787	0.0086017	2.21531e-4	0.083729	0.0136064
chr22	45171425	45171499	7529940	0	+	0.459459	(0.44,0.476]	chr22	769879	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NUP50	ENSG00000093000.19	ENST00000347635.9:ENST00000407019.6:ENST00000424634.5:ENST00000497960.5:ENST00000417702.5:ENST00000430547.5:ENST00000434760.5:ENST00000484186.5:ENST00000493456.5:ENST00000396096.6:ENST00000419387.5:ENST00000422489.1:ENST00000486184.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	60	2	3.17572	4.33725	5.49878	0.00427037	1.52058e-4	0.0573912	0.0106137
chr16	30290040	30290135	6472909	0	-	0.494737	(0.476,0.515]	chr16	625663	9	INTRON	INTRON	SMG1P5	ENSG00000183604.15	ENST00000529428.5:ENST00000411546.4:ENST00000691460.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	2	76	2	2.72507	4.33722	5.94937	0.0029369	5.50774e-5	0.0496505	0.0065165
chr4	153502082	153502182	2067609	0	+	0.58	(0.57,1]	chr4	204567	278	INTRON	INTRON	TMEM131L	ENSG00000121210.16	ENST00000409663.7:ENST00000445960.5:ENST00000409959.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	38	2	3.40333	4.337	5.27067	9.20604e-4	5.68536e-5	0.0278392	0.00655354
chr4	78802080	78802180	1981642	0	+	0.37	(0.35,0.378]	chr4	198463	250	INTRON	INTRON	BMP2K	ENSG00000138756.19	ENST00000389010.7:ENST00000502613.3:ENST00000502871.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	104	2	2.32472	4.336935	6.34915	0.0066582	2.4104600000000002e-06	0.0703994	9.83942e-4
chr1	213162061	213162161	311815	0	+	0.29	(0.28,0.32]	chr1	35945	318	INTRON	INTRON	RPS6KC1	ENSG00000136643.12	ENST00000615329.4:ENST00000543354.5:ENST00000614059.4:ENST00000543470.5:ENST00000366960.8:ENST00000366959.4:ENST00000490299.5:ENST00000468069.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	30	2	4.01002	4.336805	4.66359	0.0434868	0.0193496	0.162255	0.108861
chr10	7366392	7366487	4552489	0	-	0.305263	(0.28,0.32]	chr10	420242	5	INTRON	INTRON	SFMBT2	ENSG00000198879.13	ENST00000397167.6:ENST00000361972.8:ENST00000684547.1:ENST00000683762.1:ENST00000673876.1:ENST00000682896.1:ENST00000379713.8:ENST00000682101.1:ENST00000379711.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	30	2	4.01002	4.336805	4.66359	0.0434868	0.0193496	0.162255	0.108861
chr10	73154155	73154255	4648148	0	-	0.31	(0.28,0.32]	chr10	427629	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ECD	ENSG00000122882.11	ENST00000372979.9:ENST00000454759.6:ENST00000484976.6:ENST00000430082.6:ENST00000453402.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	30	2	4.01002	4.336805	4.66359	0.0434868	0.0193496	0.162255	0.108861
chr19	58297324	58297424	7107212	0	+	0.29	(0.28,0.32]	chr19	713389	19	UTR3	UTR3:EXON_MRNA:INTRON	ZNF8:ZNF8-ERVK3-1	ENSG00000278129.2:ENSG00000267216.1	ENST00000621650.2:ENST00000591325.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	0	30	2	4.01002	4.336805	4.66359	0.0434868	0.0193496	0.162255	0.108861
chr2	87619179	87619279	827575	0	+	0.29	(0.28,0.32]	chr2	92489	116	INTRON	INTRON	CYTOR:ENSG00000284879	ENSG00000222041.12:ENSG00000284879.1	ENST00000642796.1:ENST00000644478.1:ENST00000644125.1:ENST00000643276.1:ENST00000646855.1:ENST00000646636.1:ENST00000646578.1:ENST00000644938.1	lncRNA	lncRNA	lncRNA	lncRNA	0	30	2	4.01002	4.336805	4.66359	0.0434868	0.0193496	0.162255	0.108861
chr2	232750572	232750671	1037783	0	+	0.292929	(0.28,0.32]	chr2	110668	11	INTRON	INTRON	GIGYF2	ENSG00000204120.16	ENST00000629305.2:ENST00000428883.5:ENST00000409480.5:ENST00000456491.5:ENST00000373563.9:ENST00000409547.5:ENST00000430720.5:ENST00000425040.5:ENST00000421433.5:ENST00000423659.5:ENST00000409196.7:ENST00000409451.7:ENST00000463554.5:ENST00000440945.5:ENST00000429187.5:ENST00000424038.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	30	2	4.01002	4.336805	4.66359	0.0434868	0.0193496	0.162255	0.108861
chr22	49520280	49520380	7601282	0	-	0.32	(0.28,0.32]	chr22	778566	787	INTRON	INTRON	MIR3667HG	ENSG00000188511.13	ENST00000414287.5:ENST00000416411.1	lncRNA	lncRNA	lncRNA	lncRNA	0	30	2	4.01002	4.336805	4.66359	0.0434868	0.0193496	0.162255	0.108861
chr3	33615044	33615143	1652960	0	-	0.313131	(0.28,0.32]	chr3	169611	26	INTRON	INTRON	CLASP2	ENSG00000163539.18	ENST00000399362.8:ENST00000682230.1:ENST00000468888.6:ENST00000359576.9:ENST00000650653.1:ENST00000480013.6:ENST00000461133.8:ENST00000635664.1:ENST00000313350.10:ENST00000487200.5:ENST00000333778.10:ENST00000485378.6	protein_coding	protein_coding	protein_coding	protein_coding	0	30	2	4.01002	4.336805	4.66359	0.0434868	0.0193496	0.162255	0.108861
chr3	44476890	44476990	1676722	0	-	0.31	(0.28,0.32]	chr3	171144	182	INTRON	INTRON	ZNF445	ENSG00000185219.18	ENST00000396077.8:ENST00000474600.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	30	2	4.01002	4.336805	4.66359	0.0434868	0.0193496	0.162255	0.108861
chr5	169844734	169844834	2543111	0	+	0.32	(0.28,0.32]	chr5	242782	33	INTRON	INTRON	DOCK2	ENSG00000134516.20	ENST00000520908.7:ENST00000522138.2:ENST00000524185.5:ENST00000519628.2:ENST00000523351.6:ENST00000520181.5:ENST00000696258.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	30	2	4.01002	4.336805	4.66359	0.0434868	0.0193496	0.162255	0.108861
chr6	35583321	35583419	3086454	0	-	0.306122	(0.28,0.32]	chr6	288746	29	UTR3	UTR3:EXON_MRNA:INTRON	FKBP5	ENSG00000096060.15	ENST00000536438.5:ENST00000539068.5:ENST00000357266.9:ENST00000542713.1	protein_coding	protein_coding	protein_coding	protein_coding	0	30	2	4.01002	4.336805	4.66359	0.0434868	0.0193496	0.162255	0.108861
chr7	135472697	135472797	3648587	0	-	0.3	(0.28,0.32]	chr7	339187	339	INTRON	INTRON	CNOT4	ENSG00000080802.20	ENST00000541284.6:ENST00000451834.5:ENST00000423368.6:ENST00000361528.8:ENST00000428680.6:ENST00000315544.6:ENST00000491203.5:ENST00000498534.5:ENST00000465721.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	30	2	4.01002	4.336805	4.66359	0.0434868	0.0193496	0.162255	0.108861
chr9	109096672	109096772	4312370	0	-	0.31	(0.28,0.32]	chr9	396380	27	INTRON	INTRON	TMEM245	ENSG00000106771.13	ENST00000374586.8:ENST00000491854.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	30	2	4.01002	4.336805	4.66359	0.0434868	0.0193496	0.162255	0.108861
chr1	10412476	10412561	22611	0	+	0.247059	[0,0.28]	chr1	2406	6	INTRON	INTRON	PGD	ENSG00000142657.21	ENST00000270776.13:ENST00000483936.5:ENST00000460189.1	protein_coding	protein_coding	protein_coding	protein_coding	0	30	2	4.20106	4.3368	4.47254	0.0695895	0.020991	0.184298	0.122348
chr1	180754370	180754470	270820	0	+	0.24	[0,0.28]	chr1	31620	716	INTRON	INTRON	XPR1	ENSG00000143324.14	ENST00000367590.9:ENST00000367589.3	protein_coding	protein_coding	protein_coding	protein_coding	0	30	2	4.20106	4.3368	4.47254	0.0695895	0.020991	0.184298	0.122348
chr1	222649350	222649438	319675	0	+	0.238636	[0,0.28]	chr1	36658	2	EXON_LNCRNA	EXON_LNCRNA:INTRON	MIA3	ENSG00000154305.18	ENST00000344922.10:ENST00000354906.7:ENST00000340535.11:ENST00000495210.1:ENST00000467190.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	30	2	4.20106	4.3368	4.47254	0.0695895	0.020991	0.184298	0.122348
chr1	246902775	246902875	681664	0	-	0.26	[0,0.28]	chr1	80004	1	SS3_PROX	SS3_PROX:INTRON	AHCTF1	ENSG00000153207.16	ENST00000648844.2:ENST00000326225.3:ENST00000366508.5	protein_coding	protein_coding	protein_coding	protein_coding	0	30	2	4.20106	4.3368	4.47254	0.0695895	0.020991	0.184298	0.122348
chr13	95221747	95221847	5639075	0	-	0.21	[0,0.28]	chr13	537151	106	INTRON	INTRON	ABCC4	ENSG00000125257.16	ENST00000645237.2:ENST00000643051.1:ENST00000643842.1:ENST00000646439.1:ENST00000643816.1:ENST00000536256.3:ENST00000643556.1:ENST00000629385.1:ENST00000642524.1:ENST00000645532.1:ENST00000644471.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	30	2	4.20106	4.3368	4.47254	0.0695895	0.020991	0.184298	0.122348
chr16	90205500	90205600	6424948	0	+	0.27	[0,0.28]	chr16	617268	109	INTRON	INTRON	LINC02193	ENSG00000260923.7	ENST00000568418.1:ENST00000656587.1:ENST00000668099.1:ENST00000569162.2:ENST00000665776.1:ENST00000669853.1:ENST00000668039.1:ENST00000658135.1:ENST00000663101.1:ENST00000663757.1:ENST00000568947.2	lncRNA	lncRNA	lncRNA	lncRNA	0	30	2	4.20106	4.3368	4.47254	0.0695895	0.020991	0.184298	0.122348
chr19	21083577	21083677	7039529	0	+	0.26	[0,0.28]	chr19	701877	2	SS3_PROX	SS3_PROX:INTRON	ZNF714	ENSG00000160352.16	ENST00000616183.1:ENST00000596053.5:ENST00000618422.1:ENST00000456283.7:ENST00000613286.4:ENST00000425625.5:ENST00000618008.4:ENST00000610902.4:ENST00000620627.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	30	2	4.20106	4.3368	4.47254	0.0695895	0.020991	0.184298	0.122348
chr2	144424295	144424395	1240831	0	-	0.27	[0,0.28]	chr2	131685	1	SS5_PROX	SS5_PROX:INTRON	ZEB2	ENSG00000169554.23	ENST00000636471.1:ENST00000627532.3:ENST00000638128.1:ENST00000637304.1:ENST00000636179.1:ENST00000636820.1:ENST00000637045.1:ENST00000636413.1:ENST00000638007.1:ENST00000638087.1:ENST00000419938.5:ENST00000409487.7:ENST00000440875.6:ENST00000636732.2:ENST00000636026.2:ENST00000675069.1:ENST00000689298.1:ENST00000539609.7:ENST00000558170.6:ENST00000303660.8:ENST00000427902.5:ENST00000637267.2:ENST00000392861.6:ENST00000431672.4:ENST00000409211.5:ENST00000465308.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	30	2	4.20106	4.3368	4.47254	0.0695895	0.020991	0.184298	0.122348
chr3	50017611	50017711	1423736	0	+	0.27	[0,0.28]	chr3	149994	177	INTRON	INTRON	RBM6	ENSG00000004534.15	ENST00000442092.5:ENST00000443081.5:ENST00000419610.5:ENST00000441115.5:ENST00000422955.5:ENST00000454079.5:ENST00000266022.9:ENST00000425608.5:ENST00000434592.5:ENST00000464013.5:ENST00000483350.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	30	2	4.20106	4.3368	4.47254	0.0695895	0.020991	0.184298	0.122348
chr3	132717087	132717176	1821042	0	-	0.224719	[0,0.28]	chr3	183207	3	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	NPHP3	ENSG00000113971.21	ENST00000337331.10:ENST00000490993.5:ENST00000684294.1:ENST00000465756.5:ENST00000469232.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	30	2	4.20106	4.3368	4.47254	0.0695895	0.020991	0.184298	0.122348
chr4	150678287	150678387	2268354	0	-	0.26	[0,0.28]	chr4	220713	788	INTRON	INTRON	LRBA	ENSG00000198589.14	ENST00000357115.9:ENST00000651943.2:ENST00000510413.5:ENST00000509835.5:ENST00000651695.1:ENST00000651035.1:ENST00000507224.5:ENST00000513021.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	30	2	4.20106	4.3368	4.47254	0.0695895	0.020991	0.184298	0.122348
chr5	146222802	146222902	2514307	0	+	0.25	[0,0.28]	chr5	240158	33	INTRON	INTRON	ENSG00000275740:RBM27	ENSG00000275740.1:ENSG00000091009.8	ENST00000506502.2:ENST00000265271.7	protein_coding	protein_coding	protein_coding	protein_coding	0	30	2	4.20106	4.3368	4.47254	0.0695895	0.020991	0.184298	0.122348
chr6	26876726	26876826	3071465	0	-	0.25	[0,0.28]	chr6	285522	41	INTRON	INTRON	GUSBP2	ENSG00000241549.8	ENST00000479900.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	30	2	4.20106	4.3368	4.47254	0.0695895	0.020991	0.184298	0.122348
chr6	85532130	85532226	3150287	0	-	0.21875	[0,0.28]	chr6	293723	15	INTRON	INTRON	ENSG00000271793:SNX14	ENSG00000271793.2:ENSG00000135317.14	ENST00000682083.1:ENST00000683074.1:ENST00000681965.1:ENST00000682171.1:ENST00000684150.1:ENST00000683785.1:ENST00000682497.1:ENST00000684647.1:ENST00000683643.1:ENST00000682023.1:ENST00000682022.1:ENST00000683542.1:ENST00000683126.1:ENST00000683857.1:ENST00000683898.1:ENST00000682854.1:ENST00000682491.1:ENST00000682174.1:ENST00000684239.1:ENST00000682939.1:ENST00000684570.1:ENST00000682057.1:ENST00000682878.1:ENST00000683880.1:ENST00000684422.1:ENST00000682504.1:ENST00000683726.1:ENST00000684680.1:ENST00000683196.1:ENST00000683458.1:ENST00000683803.1:ENST00000684281.1:ENST00000682991.1:ENST00000683754.1:ENST00000683481.1:ENST00000682455.1:ENST00000682034.1:ENST00000684451.1:ENST00000683583.1:ENST00000682776.1:ENST00000683873.1:ENST00000683878.1:ENST00000683195.1:ENST00000682995.1:ENST00000682374.1:ENST00000683698.1:ENST00000682454.1:ENST00000682694.1:ENST00000682412.1:ENST00000514801.2:ENST00000682926.1:ENST00000682682.1:ENST00000346348.7:ENST00000314673.8:ENST00000682633.1:ENST00000683085.1:ENST00000682688.1:ENST00000684319.1:ENST00000683577.1:ENST00000682709.1:ENST00000684299.1:ENST00000682133.1:ENST00000682594.1:ENST00000683473.1:ENST00000682106.1:ENST00000683364.1:ENST00000683436.1:ENST00000684220.1:ENST00000683909.1:ENST00000684118.1:ENST00000681981.1:ENST00000682738.1:ENST00000509338.6:ENST00000684717.1:ENST00000682660.1:ENST00000683073.1:ENST00000515216.6:ENST00000684581.1:ENST00000683479.1:ENST00000682464.1:ENST00000684108.1:ENST00000682514.1:ENST00000684017.1:ENST00000684273.1:ENST00000513865.5:ENST00000505648.5:ENST00000508980.5:ENST00000369627.6:ENST00000503491.5:ENST00000508658.6:ENST00000683097.1:ENST00000683541.1:ENST00000683759.1:ENST00000369635.7:ENST00000503608.5:ENST00000506182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	30	2	4.20106	4.3368	4.47254	0.0695895	0.020991	0.184298	0.122348
chr6	112071317	112071411	3195147	0	-	0.265957	[0,0.28]	chr6	297604	8	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TUBE1	ENSG00000074935.14	ENST00000368662.10:ENST00000604814.5:ENST00000605457.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	30	2	4.20106	4.3368	4.47254	0.0695895	0.020991	0.184298	0.122348
chr7	64828141	64828241	3320687	0	+	0.2	[0,0.28]	chr7	308722	121	INTRON	INTRON	ZNF138	ENSG00000197008.10	ENST00000359735.7:ENST00000440155.6:ENST00000494380.5:ENST00000307355.12:ENST00000437743.1:ENST00000440598.2:ENST00000430838.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	30	2	4.20106	4.3368	4.47254	0.0695895	0.020991	0.184298	0.122348
chr8	61666488	61666584	3958622	0	-	0.229167	[0,0.28]	chr8	363153	5	INTRON	INTRON	ASPH	ENSG00000198363.18	ENST00000379454.9:ENST00000541428.5:ENST00000522349.5:ENST00000523927.5:ENST00000445642.6:ENST00000356457.9:ENST00000519234.5:ENST00000518068.5:ENST00000517903.5:ENST00000517847.6:ENST00000522835.5:ENST00000518306.5:ENST00000517856.5:ENST00000517928.1:ENST00000389204.8:ENST00000522603.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	30	2	4.20106	4.3368	4.47254	0.0695895	0.020991	0.184298	0.122348
chr1	38858719	38858814	427483	0	-	0.368421	(0.35,0.378]	chr1	51849	13	INTRON	INTRON	RRAGC	ENSG00000116954.8	ENST00000373001.4	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.08816	4.336765	4.58537	0.046021	0.00703328	0.149888	0.0754576
chr14	101977752	101977849	5820355	0	+	0.360825	(0.35,0.378]	chr14	551983	16	INTRON	INTRON	DYNC1H1	ENSG00000197102.14	ENST00000360184.10:ENST00000684561.1:ENST00000680313.1:ENST00000679720.1:ENST00000680715.1:ENST00000681283.1:ENST00000681822.1:ENST00000679910.1:ENST00000681574.1:ENST00000645039.2:ENST00000645149.2:ENST00000680200.1:ENST00000680120.1:ENST00000644881.2:ENST00000681066.1:ENST00000680423.1:ENST00000681536.1:ENST00000679486.1:ENST00000681010.1:ENST00000679629.1:ENST00000681123.1:ENST00000680874.1:ENST00000680137.1:ENST00000643508.2:ENST00000680808.1:ENST00000681311.1:ENST00000681859.1:ENST00000643684.1:ENST00000643958.2:ENST00000680001.1:ENST00000681668.1:ENST00000645114.2:ENST00000681751.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	28	2	4.08816	4.336765	4.58537	0.046021	0.00703328	0.149888	0.0754576
chr16	10436318	10436416	6286786	0	+	0.377551	(0.35,0.378]	chr16	601993	23	INTRON	INTRON	ATF7IP2	ENSG00000166669.14	ENST00000396559.5:ENST00000396560.6:ENST00000543967.5:ENST00000562102.6:ENST00000535850.5:ENST00000568027.5:ENST00000324570.9:ENST00000356427.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	28	2	4.08816	4.336765	4.58537	0.046021	0.00703328	0.149888	0.0754576
chr16	18090890	18090990	6453542	0	-	0.37	(0.35,0.378]	chr16	621960	871	INTRON	INTRON	ENSG00000259929:ENSG00000260242	ENSG00000259929.5:ENSG00000260242.1	ENST00000567304.1:ENST00000563866.1	lncRNA	lncRNA	lncRNA	lncRNA	0	28	2	4.08816	4.336765	4.58537	0.046021	0.00703328	0.149888	0.0754576
chr17	59915401	59915500	6643994	0	+	0.353535	(0.35,0.378]	chr17	648827	3	INTRON	INTRON	RPS6KB1	ENSG00000108443.14	ENST00000393021.7:ENST00000472940.5:ENST00000225577.9:ENST00000443572.6:ENST00000489824.1:ENST00000406116.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	28	2	4.08816	4.336765	4.58537	0.046021	0.00703328	0.149888	0.0754576
chr4	103168944	103169044	2215302	0	-	0.36	(0.35,0.378]	chr4	217118	50	INTRON	INTRON	CENPE	ENSG00000138778.14	ENST00000380026.8:ENST00000265148.9	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.08816	4.336765	4.58537	0.046021	0.00703328	0.149888	0.0754576
chr6	107383515	107383615	3181153	0	-	0.36	(0.35,0.378]	chr6	296346	488	INTRON	INTRON	PDSS2	ENSG00000164494.12	ENST00000369037.9:ENST00000369031.4	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.08816	4.336765	4.58537	0.046021	0.00703328	0.149888	0.0754576
chrX	11323843	11323942	7760591	0	-	0.353535	(0.35,0.378]	chrX	793516	330	INTRON	INTRON	ARHGAP6	ENSG00000047648.23	ENST00000380736.5:ENST00000337414.9:ENST00000495242.5:ENST00000489330.6:ENST00000380718.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	28	2	4.08816	4.336765	4.58537	0.046021	0.00703328	0.149888	0.0754576
chr20	44496755	44496855	7344796	0	-	0.42	(0.408,0.44]	chr20	748622	4	SS3_PROX	SS3_PROX:INTRON	SERINC3	ENSG00000132824.14	ENST00000411544.5:ENST00000255175.5	protein_coding	protein_coding	protein_coding	protein_coding	1	62	2	3.48793	4.336645	5.18536	0.00130904	6.17381e-4	0.0331539	0.0223951
chr13	46133626	46133726	5586292	0	-	0.1	[0,0.28]	chr13	533887	1	SS5_PROX	SS5_PROX:INTRON	LCP1	ENSG00000136167.15	ENST00000398576.6:ENST00000323076.7:ENST00000674665.1	protein_coding	protein_coding	protein_coding	protein_coding	0	30	2	4.28915	4.3365100000000005	4.38387	0.0501911	0.0319595	0.156383	0.14477
chr3	45728018	45728117	1417439	0	+	0.262626	[0,0.28]	chr3	148713	41	INTRON	INTRON	SACM1L	ENSG00000211456.13	ENST00000455997.5:ENST00000418611.5:ENST00000672477.1:ENST00000441228.5:ENST00000389061.10:ENST00000672858.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	30	2	4.28915	4.3365100000000005	4.38387	0.0501911	0.0319595	0.156383	0.14477
chr5	157818746	157818846	2758251	0	-	0.27	[0,0.28]	chr5	260304	8	INTRON	INTRON	CLINT1	ENSG00000113282.14	ENST00000523094.5:ENST00000411809.7:ENST00000530742.5:ENST00000523908.5	protein_coding	protein_coding	protein_coding	protein_coding	0	30	2	4.28915	4.3365100000000005	4.38387	0.0501911	0.0319595	0.156383	0.14477
chr6	149594872	149594953	3245572	0	-	0.209877	[0,0.28]	chr6	301543	1	UTR3	UTR3:EXON_MRNA	KATNA1	ENSG00000186625.14	ENST00000335643.12:ENST00000367411.7:ENST00000335647.9	protein_coding	protein_coding	protein_coding	protein_coding	0	30	2	4.28915	4.3365100000000005	4.38387	0.0501911	0.0319595	0.156383	0.14477
chr7	107352454	107352553	3610905	0	-	0.222222	[0,0.28]	chr7	336672	276	INTRON	INTRON	COG5	ENSG00000164597.15	ENST00000297135.9:ENST00000347053.8:ENST00000393603.7	protein_coding	protein_coding	protein_coding	protein_coding	0	30	2	4.28915	4.3365100000000005	4.38387	0.0501911	0.0319595	0.156383	0.14477
chr8	95138830	95138930	3803043	0	+	0.28	[0,0.28]	chr8	352652	41	INTRON	INTRON	PLEKHF2	ENSG00000175895.4	ENST00000315367.4:ENST00000519516.1	protein_coding	protein_coding	protein_coding	protein_coding	0	30	2	4.28915	4.3365100000000005	4.38387	0.0501911	0.0319595	0.156383	0.14477
chr8	102409274	102409374	4012722	0	-	0.27	[0,0.28]	chr8	367237	473	INTRON	INTRON	UBR5	ENSG00000104517.13	ENST00000520539.6:ENST00000220959.8:ENST00000521922.5	protein_coding	protein_coding	protein_coding	protein_coding	0	30	2	4.28915	4.3365100000000005	4.38387	0.0501911	0.0319595	0.156383	0.14477
chr10	63381281	63381381	4634544	0	-	0.45	(0.44,0.476]	chr10	426236	4	INTRON	INTRON	JMJD1C	ENSG00000171988.20	ENST00000399262.7:ENST00000633035.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	60	2	3.22192	4.336444999999999	5.45097	0.00360821	1.90652e-4	0.0533855	0.0120089
chr13	50246703	50246803	5492633	0	+	0.45	(0.44,0.476]	chr13	526057	220	INTRON	INTRON	DLEU1	ENSG00000176124.15	ENST00000467721.5:ENST00000468522.5:ENST00000490577.5:ENST00000491341.5:ENST00000491615.5:ENST00000463474.7:ENST00000468168.5:ENST00000476738.5:ENST00000461527.7:ENST00000486895.5:ENST00000485007.5:ENST00000475913.5:ENST00000484529.5:ENST00000473075.3:ENST00000483444.5	lncRNA	lncRNA	lncRNA	lncRNA	0	27	2	4.23755	4.336399999999999	4.43525	0.0263357	0.00897296	0.122221	0.0849778
chr15	52024795	52024895	6029077	0	+	0.45	(0.44,0.476]	chr15	574420	1	SS5_PROX	SS5_PROX:INTRON	MAPK6	ENSG00000069956.14	ENST00000560802.1:ENST00000691380.1:ENST00000558063.5:ENST00000560254.1:ENST00000681888.1:ENST00000261845.7:ENST00000680066.1:ENST00000680777.1:ENST00000558100.1:ENST00000680652.1:ENST00000558841.1:ENST00000558891.1:ENST00000560774.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	27	2	4.23755	4.336399999999999	4.43525	0.0263357	0.00897296	0.122221	0.0849778
chr15	57114380	57114479	6034076	0	+	0.454545	(0.44,0.476]	chr15	574693	47	INTRON	INTRON	TCF12	ENSG00000140262.18	ENST00000438423.6:ENST00000267811.9:ENST00000333725.10:ENST00000560190.5:ENST00000559609.5:ENST00000557843.5:ENST00000557947.5:ENST00000561152.1:ENST00000561346.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	27	2	4.23755	4.336399999999999	4.43525	0.0263357	0.00897296	0.122221	0.0849778
chr19	319038	319138	7109346	0	-	0.46	(0.44,0.476]	chr19	713786	50	INTRON	INTRON	MIER2	ENSG00000105556.12	ENST00000264819.7	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.23755	4.336399999999999	4.43525	0.0263357	0.00897296	0.122221	0.0849778
chr3	63899575	63899672	1441358	0	+	0.443299	(0.44,0.476]	chr3	152370	7	INTRON	INTRON	ATXN7	ENSG00000163635.20	ENST00000643464.1:ENST00000647117.1:ENST00000674280.1:ENST00000474112.5:ENST00000474513.6:ENST00000295900.10:ENST00000674254.1:ENST00000650280.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	27	2	4.23755	4.336399999999999	4.43525	0.0263357	0.00897296	0.122221	0.0849778
chr4	51893733	51893832	1959072	0	+	0.454545	(0.44,0.476]	chr4	196342	15	INTRON	INTRON	DCUN1D4	ENSG00000109184.15	ENST00000509376.5:ENST00000381441.7:ENST00000334635.10:ENST00000507741.5:ENST00000477560.5:ENST00000451288.6:ENST00000510587.5:ENST00000507659.5:ENST00000505634.5:ENST00000510808.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	27	2	4.23755	4.336399999999999	4.43525	0.0263357	0.00897296	0.122221	0.0849778
chr10	72792865	72792965	4451105	0	+	0.47	(0.44,0.476]	chr10	410768	318	INTRON	INTRON	MCU	ENSG00000156026.15	ENST00000373053.8:ENST00000357157.10:ENST00000604679.5:ENST00000604372.5:ENST00000603649.5:ENST00000605597.5:ENST00000536019.5:ENST00000604152.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	27	2	4.33346	4.336225	4.33899	0.0206616	0.0120349	0.110999	0.0962115
chr13	99015785	99015874	5646114	0	-	0.449438	(0.44,0.476]	chr13	537856	3	UTR5	UTR5:EXON_MRNA:INTRON	DOCK9	ENSG00000088387.21	ENST00000448493.7:ENST00000652315.1:ENST00000427887.2:ENST00000479769.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	27	2	4.33346	4.336225	4.33899	0.0206616	0.0120349	0.110999	0.0962115
chr14	50192496	50192596	5888182	0	-	0.47	(0.44,0.476]	chr14	558977	34	INTRON	INTRON	SOS2	ENSG00000100485.12	ENST00000216373.10:ENST00000543680.5:ENST00000556469.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	27	2	4.33346	4.336225	4.33899	0.0206616	0.0120349	0.110999	0.0962115
chr14	105279148	105279247	5974135	0	-	0.474747	(0.44,0.476]	chr14	568047	59	INTRON	INTRON	BRF1	ENSG00000185024.18	ENST00000547530.7:ENST00000379937.6:ENST00000619151.4:ENST00000327359.7:ENST00000440513.7:ENST00000546417.5:ENST00000550692.1:ENST00000548421.2	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.33346	4.336225	4.33899	0.0206616	0.0120349	0.110999	0.0962115
chr17	28353505	28353594	6744023	0	-	0.460674	(0.44,0.476]	chr17	662227	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	POLDIP2	ENSG00000004142.12	ENST00000540200.6:ENST00000618887.2	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.33346	4.336225	4.33899	0.0206616	0.0120349	0.110999	0.0962115
chr17	57283374	57283473	6633018	0	+	0.464646	(0.44,0.476]	chr17	648007	35	INTRON	INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000581776.5:ENST00000674961.1:ENST00000582453.5:ENST00000675656.1:ENST00000322684.7:ENST00000579590.5:ENST00000676073.1:ENST00000675822.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	27	2	4.33346	4.336225	4.33899	0.0206616	0.0120349	0.110999	0.0962115
chr2	25798587	25798686	1084735	0	-	0.464646	(0.44,0.476]	chr2	115929	41	INTRON	INTRON	ASXL2	ENSG00000143970.18	ENST00000435504.9:ENST00000336112.9:ENST00000497092.1	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.33346	4.336225	4.33899	0.0206616	0.0120349	0.110999	0.0962115
chr2	236047592	236047689	1046894	0	+	0.443299	(0.44,0.476]	chr2	111336	12	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000336665.9:ENST00000635100.1:ENST00000409538.5:ENST00000614409.4:ENST00000428334.6:ENST00000418654.1:ENST00000466575.5:ENST00000482882.1:ENST00000453371.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	27	2	4.33346	4.336225	4.33899	0.0206616	0.0120349	0.110999	0.0962115
chr20	47269720	47269819	7348631	0	-	0.464646	(0.44,0.476]	chr20	749288	69	INTRON	INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000467200.6:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000468376.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	27	2	4.33346	4.336225	4.33899	0.0206616	0.0120349	0.110999	0.0962115
chr22	20937936	20938036	7480723	0	+	0.47	(0.44,0.476]	chr22	763096	33	INTRON	INTRON	CRKL	ENSG00000099942.13	ENST00000354336.8:ENST00000411769.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	27	2	4.33346	4.336225	4.33899	0.0206616	0.0120349	0.110999	0.0962115
chr5	150494486	150494585	2519768	0	+	0.454545	(0.44,0.476]	chr5	241013	77	INTRON	INTRON	NDST1	ENSG00000070614.15	ENST00000522491.1:ENST00000519157.1:ENST00000524161.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	27	2	4.33346	4.336225	4.33899	0.0206616	0.0120349	0.110999	0.0962115
chr6	32838408	32838480	3081953	0	-	0.458333	(0.44,0.476]	chr6	288047	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TAP2	ENSG00000204267.17	ENST00000652259.1:ENST00000374897.4	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.33346	4.336225	4.33899	0.0206616	0.0120349	0.110999	0.0962115
chr7	64704925	64705025	3320275	0	+	0.46	(0.44,0.476]	chr7	308693	65	INTRON	INTRON	ZNF107	ENSG00000196247.13	ENST00000395391.2:ENST00000620827.6:ENST00000423627.6:ENST00000613690.5:ENST00000344930.7:ENST00000682671.1:ENST00000683971.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	27	2	4.33346	4.336225	4.33899	0.0206616	0.0120349	0.110999	0.0962115
chr9	120570806	120570899	4333802	0	-	0.451613	(0.44,0.476]	chr9	398164	2	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:INTRON	CDK5RAP2	ENSG00000136861.19	ENST00000349780.9:ENST00000360190.8:ENST00000687279.1:ENST00000687633.1:ENST00000684780.1:ENST00000687311.1:ENST00000690814.1:ENST00000686842.1:ENST00000693714.1:ENST00000693386.1:ENST00000692746.1:ENST00000686376.1:ENST00000692155.1:ENST00000690646.1:ENST00000693433.1:ENST00000688923.1:ENST00000473282.6:ENST00000480112.5:ENST00000685866.1:ENST00000689688.1:ENST00000416449.6:ENST00000691504.1:ENST00000360822.8:ENST00000693728.1:ENST00000690474.1:ENST00000693137.1:ENST00000693702.1:ENST00000481266.2:ENST00000472883.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	27	2	4.33346	4.336225	4.33899	0.0206616	0.0120349	0.110999	0.0962115
chr16	74591679	74591779	6525178	0	-	0.37	(0.35,0.378]	chr16	631842	285	INTRON	INTRON	GLG1	ENSG00000090863.12	ENST00000205061.9:ENST00000422840.7:ENST00000447066.6:ENST00000562090.5:ENST00000567951.5:ENST00000627032.2:ENST00000565260.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	28	2	4.19022	4.33603	4.48184	0.0209891	0.0191702	0.122348	0.108861
chr20	24967293	24967393	7321800	0	-	0.37	(0.35,0.378]	chr20	745581	25	INTRON	INTRON	APMAP	ENSG00000101474.12	ENST00000217456.3:ENST00000451442.5	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.19022	4.33603	4.48184	0.0209891	0.0191702	0.122348	0.108861
chr3	44438689	44438789	1676329	0	-	0.36	(0.35,0.378]	chr3	171106	71	UTR3	UTR3:EXON_MRNA:INTRON	C3orf86:ZNF445	ENSG00000225873.4:ENSG00000185219.18	ENST00000636468.1:ENST00000637612.1:ENST00000396077.8	protein_coding	protein_coding	protein_coding:transcribed_unitary_pseudogene	protein_coding:processed_transcript	0	28	2	4.19022	4.33603	4.48184	0.0209891	0.0191702	0.122348	0.108861
chr6	110812060	110812160	3190424	0	-	0.36	(0.35,0.378]	chr6	297127	378	INTRON	INTRON	CDK19	ENSG00000155111.15	ENST00000323817.7:ENST00000368911.8:ENST00000413605.6:ENST00000457688.5:ENST00000460913.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	28	2	4.19022	4.33603	4.48184	0.0209891	0.0191702	0.122348	0.108861
chr7	879023	879121	3269133	0	+	0.561224	(0.515,0.57]	chr7	303674	3	INTRON	INTRON	SUN1:GET4	ENSG00000164828.18:ENSG00000239857.7	ENST00000457861.1:ENST00000265857.8:ENST00000412734.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	53	2	3.76294	4.33603	4.90912	0.0021669	2.08636e-4	0.0417866	0.0125926
chr8	42303991	42304090	3743271	0	+	0.373737	(0.35,0.378]	chr8	348084	101	INTRON	INTRON	IKBKB	ENSG00000104365.16	ENST00000520810.6:ENST00000629753.2:ENST00000517890.5:ENST00000520835.7:ENST00000523105.5:ENST00000519735.5:ENST00000519733.5:ENST00000518679.5:ENST00000517917.5:ENST00000342222.6:ENST00000520201.5:ENST00000518647.5:ENST00000517388.5:ENST00000521661.5:ENST00000520655.5:ENST00000517812.5:ENST00000522147.4:ENST00000523517.5:ENST00000416505.7:ENST00000649612.3:ENST00000648136.2:ENST00000676525.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	28	2	4.19022	4.33603	4.48184	0.0209891	0.0191702	0.122348	0.108861
chr21	44797690	44797790	7468690	0	-	0.35	(0.32,0.35]	chr21	761177	92	INTRON	INTRON	UBE2G2	ENSG00000184787.19	ENST00000345496.7:ENST00000497630.5:ENST00000477954.5:ENST00000491513.5:ENST00000330942.9:ENST00000478200.1:ENST00000497664.5:ENST00000462569.5:ENST00000490450.5:ENST00000496395.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	90	2	2.66302	4.33571	6.0084	0.00542632	2.68752e-5	0.0645052	0.00408175
chr9	107326585	107326683	4183821	0	+	0.336735	(0.32,0.35]	chr9	381592	12	INTRON	INTRON	RAD23B	ENSG00000119318.13	ENST00000358015.8:ENST00000416373.6:ENST00000457811.1	protein_coding	protein_coding	protein_coding	protein_coding	2	90	2	2.66302	4.33571	6.0084	0.00542632	2.68752e-5	0.0645052	0.00408175
chr5	116173562	116173662	2457023	0	+	0.34	(0.32,0.35]	chr5	235517	390	INTRON	INTRON	COMMD10	ENSG00000145781.9	ENST00000507356.5:ENST00000274458.9:ENST00000632434.1:ENST00000515539.5:ENST00000506589.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	31	2	3.77344	4.33556	4.89768	0.0596635	0.00793135	0.189982	0.076155
chr6	42880632	42880708	2867661	0	+	0.513158	(0.476,0.515]	chr6	271374	2	EXON_LNCRNA	EXON_LNCRNA:SS3_PROX:INTRON	RPL7L1	ENSG00000146223.16	ENST00000493763.7:ENST00000483998.6:ENST00000397415.7:ENST00000304734.9:ENST00000487619.1:ENST00000492836.1:ENST00000497417.1:ENST00000602561.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	126	2	4.11386	4.33553	4.5572	4.0075e-5	5.47163e-6	0.00513517	0.0017411
chr7	105457096	105457195	3604190	0	-	0.414141	(0.408,0.44]	chr7	336181	7	UTR3	UTR3:EXON_MRNA:INTRON	PUS7	ENSG00000091127.14	ENST00000481939.5:ENST00000469408.6:ENST00000356362.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	128	2	2.47553	4.335135	6.19474	8.63273e-4	3.43916e-6	0.0268312	0.00120545
chr3	23864171	23864271	1388312	0	+	0.42	(0.408,0.44]	chr3	145385	523	INTRON	INTRON	UBE2E1	ENSG00000170142.12	ENST00000306627.8:ENST00000346855.7:ENST00000495141.5:ENST00000442670.5:ENST00000424381.5:ENST00000467766.5:ENST00000475680.5:ENST00000452012.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	90	2	2.76768	4.33492	5.90216	6.71664e-4	8.66425e-5	0.0235155	0.00836204
chr10	49496645	49496744	4614501	0	-	0.515152	(0.476,0.515]	chr10	425061	30	INTRON	INTRON	ERCC6	ENSG00000225830.16	ENST00000681659.1:ENST00000681632.1:ENST00000355832.10:ENST00000623073.3:ENST00000623115.3:ENST00000475116.1:ENST00000623318.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	29	2	3.83018	4.3349	4.83962	0.0423385	0.00480934	0.161744	0.0602209
chr13	114292490	114292589	5550940	0	+	0.515152	(0.476,0.515]	chr13	530574	3	INTRON	INTRON	UPF3A	ENSG00000169062.15	ENST00000375299.8:ENST00000351487.5:ENST00000480362.5:ENST00000474056.5:ENST00000493727.5:ENST00000475218.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	29	2	3.83018	4.3349	4.83962	0.0423385	0.00480934	0.161744	0.0602209
chr17	58790234	58790334	6637987	0	+	0.48	(0.476,0.515]	chr17	648237	334	INTRON	INTRON	PPM1E	ENSG00000175175.6	ENST00000308249.4	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	3.83018	4.3349	4.83962	0.0423385	0.00480934	0.161744	0.0602209
chr20	34595890	34595989	7330325	0	-	0.494949	(0.476,0.515]	chr20	746633	69	INTRON	INTRON	PIGU	ENSG00000101464.11	ENST00000217446.8:ENST00000374820.6:ENST00000438215.1:ENST00000480175.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	29	2	3.83018	4.3349	4.83962	0.0423385	0.00480934	0.161744	0.0602209
chr3	185495315	185495409	1883989	0	-	0.510638	(0.476,0.515]	chr3	188408	1	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	TMEM41A	ENSG00000163900.11	ENST00000382227.7:ENST00000475480.5:ENST00000421852.6:ENST00000296254.3:ENST00000467061.1:ENST00000467520.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	29	2	3.83018	4.3349	4.83962	0.0423385	0.00480934	0.161744	0.0602209
chr2	222935285	222935383	1021984	0	+	0.418367	(0.408,0.44]	chr2	109357	2	INTRON	INTRON	ACSL3	ENSG00000123983.15	ENST00000392066.7:ENST00000407441.5:ENST00000680251.1:ENST00000679541.1:ENST00000681906.1:ENST00000679545.1:ENST00000679932.1:ENST00000680100.1:ENST00000680475.1:ENST00000680525.1:ENST00000680420.1:ENST00000681326.1:ENST00000681292.1:ENST00000680395.1:ENST00000680736.1:ENST00000680147.1:ENST00000357430.8:ENST00000681009.1:ENST00000679514.1:ENST00000681697.1:ENST00000680921.1:ENST00000681383.1:ENST00000679558.1:ENST00000680684.1:ENST00000680424.1:ENST00000495541.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	90	2	2.64127	4.33485	6.02843	0.00125199	4.71156e-5	0.0328543	0.00593131
chr6	3262385	3262485	2789278	0	+	0.34	(0.32,0.35]	chr6	263445	28	INTRON	INTRON	PSMG4	ENSG00000180822.12	ENST00000509933.1:ENST00000380306.8:ENST00000380305.4:ENST00000438998.7:ENST00000419065.6:ENST00000473000.2:ENST00000324987.4:ENST00000451246.2:ENST00000454610.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	62	2	3.07975	4.33449	5.58923	0.00554235	8.12357e-4	0.0674105	0.0263656
chr7	152839769	152839868	3451329	0	+	0.545455	(0.515,0.57]	chr7	322567	143	INTRON	INTRON	ACTR3B	ENSG00000133627.18	ENST00000377776.7:ENST00000256001.13:ENST00000397282.2:ENST00000479402.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	55	2	3.53844	4.33409	5.12974	7.92613e-4	4.54392e-4	0.0259663	0.0192381
chr4	2006897	2006997	2096031	0	-	0.38	(0.378,0.408]	chr4	207409	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	NELFA	ENSG00000185049.16	ENST00000542778.5:ENST00000382882.9:ENST00000333877.8:ENST00000431323.6:ENST00000455762.5:ENST00000421397.5:ENST00000411649.3:ENST00000443203.5:ENST00000458616.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	58	2	3.1136	4.333740000000001	5.55388	0.00443339	5.01023e-4	0.061054	0.0206993
chr17	1554146	1554246	6701017	0	-	0.44	(0.408,0.44]	chr17	655885	6	INTRON	INTRON	PITPNA	ENSG00000174238.16	ENST00000313486.12:ENST00000575288.5:ENST00000576722.5:ENST00000575895.5:ENST00000576761.5:ENST00000576010.6:ENST00000573231.1:ENST00000573056.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	27	2	4.23096	4.33338	4.4358	0.0278028	0.00893097	0.123904	0.0849778
chr2	74041785	74041885	812357	0	+	0.41	(0.408,0.44]	chr2	90852	383	INTRON	INTRON	TET3	ENSG00000187605.16	ENST00000409262.8:ENST00000305799.8	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.23096	4.33338	4.4358	0.0278028	0.00893097	0.123904	0.0849778
chr2	232545257	232545355	1342588	0	-	0.438776	(0.408,0.44]	chr2	140594	15	UTR3	UTR3:EXON_MRNA	TIGD1	ENSG00000221944.9	ENST00000408957.7	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.23096	4.33338	4.4358	0.0278028	0.00893097	0.123904	0.0849778
chr7	6188108	6188204	3476535	0	-	0.416667	(0.408,0.44]	chr7	325317	4	SS3_PROX	SS3_PROX:INTRON	CYTH3	ENSG00000008256.16	ENST00000396741.3:ENST00000350796.8:ENST00000482460.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	27	2	4.23096	4.33338	4.4358	0.0278028	0.00893097	0.123904	0.0849778
chr8	30166301	30166401	3727350	0	+	0.41	(0.408,0.44]	chr8	346414	4	SS5_PROX	SS5_PROX:INTRON	LEPROTL1:DCTN6	ENSG00000104660.19:ENSG00000104671.8	ENST00000520739.5:ENST00000522141.5:ENST00000221114.8:ENST00000520829.5:ENST00000522540.5:ENST00000523666.5:ENST00000519830.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	27	2	4.23096	4.33338	4.4358	0.0278028	0.00893097	0.123904	0.0849778
chr8	60810145	60810244	3760216	0	+	0.424242	(0.408,0.44]	chr8	349601	6	INTRON	INTRON	CHD7	ENSG00000171316.13	ENST00000423902.7:ENST00000695853.1:ENST00000524602.5:ENST00000525508.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	27	2	4.23096	4.33338	4.4358	0.0278028	0.00893097	0.123904	0.0849778
chr8	99362116	99362216	3814773	0	+	0.42	(0.408,0.44]	chr8	353192	865	INTRON	INTRON	VPS13B	ENSG00000132549.20	ENST00000496144.5:ENST00000683334.1:ENST00000357162.7:ENST00000358544.7:ENST00000683619.1:ENST00000683869.1:ENST00000682153.1:ENST00000682358.1:ENST00000682145.1:ENST00000355155.6:ENST00000682234.1:ENST00000683486.1:ENST00000522802.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	27	2	4.23096	4.33338	4.4358	0.0278028	0.00893097	0.123904	0.0849778
chr9	123445838	123445937	4341158	0	-	0.424242	(0.408,0.44]	chr9	399020	50	INTRON	INTRON	DENND1A	ENSG00000119522.17	ENST00000373624.6:ENST00000473039.5:ENST00000394215.7:ENST00000373620.7:ENST00000491650.5:ENST00000497135.5:ENST00000373618.1:ENST00000479305.5:ENST00000462245.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	27	2	4.23096	4.33338	4.4358	0.0278028	0.00893097	0.123904	0.0849778
chr14	67894904	67895004	5766124	0	+	0.46	(0.44,0.476]	chr14	547058	73	INTRON	INTRON	RAD51B	ENSG00000182185.19	ENST00000487861.5:ENST00000471583.6:ENST00000479335.5:ENST00000487270.5:ENST00000488612.5:ENST00000553595.5:ENST00000497460.5:ENST00000492236.5:ENST00000554244.5:ENST00000478014.5:ENST00000469165.6:ENST00000460526.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	29	2	3.8344	4.33321	4.83202	0.041276	0.00525002	0.161534	0.0633615
chr19	13928688	13928783	7023683	0	+	0.452632	(0.44,0.476]	chr19	698611	1	INTRON	INTRON	CC2D1A	ENSG00000132024.18	ENST00000318003.11:ENST00000589606.5:ENST00000586955.5:ENST00000589138.5:ENST00000680977.1:ENST00000681846.1:ENST00000681428.1:ENST00000679637.1:ENST00000679937.1:ENST00000587508.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	29	2	3.8344	4.33321	4.83202	0.041276	0.00525002	0.161534	0.0633615
chr2	148647548	148647648	891780	0	+	0.46	(0.44,0.476]	chr2	98781	16	INTRON	INTRON	EPC2	ENSG00000135999.12	ENST00000457184.5:ENST00000258484.11:ENST00000409654.5:ENST00000397424.2	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	3.8344	4.33321	4.83202	0.041276	0.00525002	0.161534	0.0633615
chr9	37762367	37762442	4121490	0	+	0.453333	(0.44,0.476]	chr9	375691	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TRMT10B	ENSG00000165275.10	ENST00000377753.6:ENST00000537911.5:ENST00000297994.4:ENST00000377754.6:ENST00000488673.6:ENST00000537016.5:ENST00000538370.5:ENST00000540616.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	29	2	3.8344	4.33321	4.83202	0.041276	0.00525002	0.161534	0.0633615
chr17	81598105	81598201	6849206	0	-	0.375	(0.35,0.378]	chr17	678181	4	INTRON	INTRON	NPLOC4	ENSG00000182446.14	ENST00000331134.11:ENST00000374747.9:ENST00000574897.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	59	2	3.45621	4.333195	5.21018	0.00228003	0.0011842	0.0426265	0.031662
chr1	43408092	43408192	84909	0	+	0.42	(0.408,0.44]	chr1	11228	13	INTRON	INTRON	SZT2	ENSG00000198198.17	ENST00000562955.2:ENST00000634258.3:ENST00000406439.7:ENST00000357658.4:ENST00000639852.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	27	2	4.33238	4.33319	4.334	0.0218901	0.011982	0.11491	0.0962115
chr1	108803402	108803502	178830	0	+	0.42	(0.408,0.44]	chr1	19465	27	INTRON	INTRON	STXBP3	ENSG00000116266.11	ENST00000370008.4:ENST00000472099.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	27	2	4.33238	4.33319	4.334	0.0218901	0.011982	0.11491	0.0962115
chr1	245777002	245777102	673391	0	-	0.41	(0.408,0.44]	chr1	79659	125	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000366517.5:ENST00000366516.5:ENST00000482592.5:ENST00000490107.6:ENST00000470510.5:ENST00000483072.5:ENST00000490322.1:ENST00000493441.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	27	2	4.33238	4.33319	4.334	0.0218901	0.011982	0.11491	0.0962115
chr11	11875844	11875943	4735894	0	+	0.414141	(0.408,0.44]	chr11	438603	16	INTRON	INTRON	USP47	ENSG00000170242.19	ENST00000339865.9:ENST00000525257.1:ENST00000527733.7:ENST00000399455.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	27	2	4.33238	4.33319	4.334	0.0218901	0.011982	0.11491	0.0962115
chr13	60092627	60092727	5603660	0	-	0.42	(0.408,0.44]	chr13	535529	495	INTRON	INTRON	DIAPH3	ENSG00000139734.19	ENST00000400324.9:ENST00000377908.6:ENST00000400319.5:ENST00000400320.5:ENST00000267215.8	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.33238	4.33319	4.334	0.0218901	0.011982	0.11491	0.0962115
chr14	31185301	31185401	5858787	0	-	0.41	(0.408,0.44]	chr14	556717	3	SS5_PROX	SS5_PROX:INTRON	HECTD1	ENSG00000092148.14	ENST00000399332.6:ENST00000553700.5:ENST00000693685.1:ENST00000692835.1:ENST00000554882.6:ENST00000611816.5:ENST00000688933.1:ENST00000691390.1:ENST00000553957.6:ENST00000687002.1:ENST00000554471.3:ENST00000556224.6:ENST00000553616.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	27	2	4.33238	4.33319	4.334	0.0218901	0.011982	0.11491	0.0962115
chr14	37168680	37168780	5877974	0	-	0.42	(0.408,0.44]	chr14	558013	2933	INTRON	INTRON	SLC25A21	ENSG00000183032.12	ENST00000331299.6:ENST00000555449.5:ENST00000557611.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	27	2	4.33238	4.33319	4.334	0.0218901	0.011982	0.11491	0.0962115
chr17	20010572	20010652	6571797	0	+	0.425	(0.408,0.44]	chr17	639044	4	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	SPECC1	ENSG00000128487.19	ENST00000677148.1:ENST00000679048.1:ENST00000678019.1:ENST00000678315.1:ENST00000678321.1:ENST00000676570.1:ENST00000678651.1:ENST00000679049.1:ENST00000472876.5:ENST00000467722.3:ENST00000583528.6:ENST00000680019.1:ENST00000395527.9:ENST00000681593.1:ENST00000680830.1:ENST00000680124.1:ENST00000583482.7:ENST00000679255.1:ENST00000681202.1:ENST00000677914.1:ENST00000578321.2:ENST00000680374.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	27	2	4.33238	4.33319	4.334	0.0218901	0.011982	0.11491	0.0962115
chr17	32869013	32869112	6757035	0	-	0.414141	(0.408,0.44]	chr17	664079	61	INTRON	INTRON	MYO1D	ENSG00000176658.17	ENST00000318217.10:ENST00000579584.5:ENST00000583621.1	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.33238	4.33319	4.334	0.0218901	0.011982	0.11491	0.0962115
chr17	35649730	35649830	6600175	0	+	0.43	(0.408,0.44]	chr17	642300	74	INTRON	INTRON	AP2B1	ENSG00000006125.18	ENST00000616784.4:ENST00000621914.4:ENST00000620039.4:ENST00000616681.4:ENST00000621668.4:ENST00000610402.5:ENST00000612035.4:ENST00000614600.4:ENST00000612116.5:ENST00000618940.4:ENST00000619183.1:ENST00000588116.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	27	2	4.33238	4.33319	4.334	0.0218901	0.011982	0.11491	0.0962115
chr17	40237515	40237615	6609646	0	+	0.41	(0.408,0.44]	chr17	643734	166	INTRON	INTRON	WIPF2	ENSG00000171475.14	ENST00000323571.9:ENST00000583268.1:ENST00000494757.5:ENST00000582781.5:ENST00000585043.5:ENST00000394103.7:ENST00000583130.5:ENST00000584296.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	27	2	4.33238	4.33319	4.334	0.0218901	0.011982	0.11491	0.0962115
chr22	29605908	29606008	7496544	0	+	0.41	(0.408,0.44]	chr22	764901	14	INTRON	INTRON	NF2	ENSG00000186575.19	ENST00000413209.6:ENST00000672805.1:ENST00000403435.5:ENST00000672461.1:ENST00000361452.8:ENST00000338641.10:ENST00000672896.1:ENST00000403999.7:ENST00000334961.11:ENST00000353887.8:ENST00000432151.5:ENST00000361676.8:ENST00000397789.3:ENST00000673312.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	27	2	4.33238	4.33319	4.334	0.0218901	0.011982	0.11491	0.0962115
chr22	35900361	35900461	7582714	0	-	0.44	(0.408,0.44]	chr22	775894	599	INTRON	INTRON	RBFOX2	ENSG00000100320.24	ENST00000438146.7:ENST00000695854.1:ENST00000359369.8:ENST00000695807.1:ENST00000408983.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	27	2	4.33238	4.33319	4.334	0.0218901	0.011982	0.11491	0.0962115
chr5	37325700	37325800	2602295	0	-	0.43	(0.408,0.44]	chr5	247424	4	SS5_PROX	SS5_PROX:INTRON	NUP155	ENSG00000113569.16	ENST00000231498.8:ENST00000381843.6:ENST00000513532.1	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.33238	4.33319	4.334	0.0218901	0.011982	0.11491	0.0962115
chr6	108567124	108567224	2934207	0	+	0.41	(0.408,0.44]	chr6	276322	49	INTRON	INTRON	FOXO3	ENSG00000118689.15	ENST00000343882.10:ENST00000406360.2	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.33238	4.33319	4.334	0.0218901	0.011982	0.11491	0.0962115
chr7	7185511	7185611	3274619	0	+	0.43	(0.408,0.44]	chr7	304569	23	INTRON	INTRON	C1GALT1	ENSG00000106392.11	ENST00000429911.5:ENST00000436587.7:ENST00000467716.1:ENST00000476068.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	27	2	4.33238	4.33319	4.334	0.0218901	0.011982	0.11491	0.0962115
chr21	8404261	8404361	7366592	0	+	0.6	(0.57,1]	chr21	751814	198	INTRON	INTRON	ENSG00000280441	ENSG00000280441.3	ENST00000623860.3:ENST00000651813.1:ENST00000652379.1:ENST00000651958.1	lncRNA	lncRNA	lncRNA	lncRNA	3	63	2	3.25513	4.332625	5.41012	2.35468e-5	1.66635e-5	0.00396325	0.00307972
chr1	108782906	108783006	178620	0	+	0.51	(0.476,0.515]	chr1	19432	2	SS5_PROX	SS5_PROX:INTRON	STXBP3	ENSG00000116266.11	ENST00000370008.4:ENST00000495245.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	28	2	3.97201	4.332605	4.6932	0.030904	0.00753088	0.143385	0.074841
chr12	131754789	131754885	5249534	0	+	0.479167	(0.476,0.515]	chr12	499184	3	SS5_PROX	SS5_PROX:INTRON	SFSWAP	ENSG00000061936.10	ENST00000261674.9:ENST00000538548.5:ENST00000535236.5:ENST00000541286.5:ENST00000537164.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	28	2	3.97201	4.332605	4.6932	0.030904	0.00753088	0.143385	0.074841
chr16	19565050	19565150	6313126	0	+	0.49	(0.476,0.515]	chr16	604270	1	SS5_PROX	SS5_PROX:INTRON	VPS35L	ENSG00000103544.16	ENST00000544670.5:ENST00000251143.9:ENST00000438132.7:ENST00000539322.5:ENST00000542263.5:ENST00000417362.7:ENST00000543460.1:ENST00000537186.6:ENST00000513947.8:ENST00000567245.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	28	2	3.97201	4.332605	4.6932	0.030904	0.00753088	0.143385	0.074841
chr19	10782195	10782295	7014421	0	+	0.5	(0.476,0.515]	chr19	696965	4	SS5_PROX	SS5_PROX:INTRON	DNM2	ENSG00000079805.19	ENST00000683738.1:ENST00000682285.1:ENST00000682524.1:ENST00000355667.11:ENST00000389253.9:ENST00000585892.5:ENST00000359692.10:ENST00000408974.8:ENST00000591701.5:ENST00000587485.1:ENST00000591118.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	28	2	3.97201	4.332605	4.6932	0.030904	0.00753088	0.143385	0.074841
chr22	17693378	17693476	7475571	0	+	0.510204	(0.476,0.515]	chr22	762176	11	INTRON	INTRON	BCL2L13	ENSG00000099968.18	ENST00000399781.5:ENST00000399782.5:ENST00000337612.9:ENST00000418951.6:ENST00000538149.5:ENST00000543133.5:ENST00000611738.4:ENST00000616863.4:ENST00000618481.4:ENST00000498133.5:ENST00000317582.10:ENST00000493680.5:ENST00000355028.4:ENST00000399777.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	28	2	3.97201	4.332605	4.6932	0.030904	0.00753088	0.143385	0.074841
chr9	38033430	38033530	4253978	0	-	0.51	(0.476,0.515]	chr9	391691	169	INTRON	INTRON	SHB	ENSG00000107338.10	ENST00000377707.4	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	3.97201	4.332605	4.6932	0.030904	0.00753088	0.143385	0.074841
chrX	119598303	119598402	7873037	0	-	0.50505	(0.476,0.515]	chrX	801774	53	INTRON	INTRON	NKRF	ENSG00000186416.18	ENST00000304449.8:ENST00000542113.3:ENST00000688521.1	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	3.97201	4.332605	4.6932	0.030904	0.00753088	0.143385	0.074841
chr1	21751406	21751506	396542	0	-	0.33	(0.32,0.35]	chr1	47318	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	USP48	ENSG00000090686.16	ENST00000400301.5:ENST00000308271.14:ENST00000529637.5:ENST00000421625.6	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	3.94529	4.332495	4.7197	0.0693433	0.00568521	0.184298	0.0678837
chr10	114848063	114848146	4527758	0	+	0.325301	(0.32,0.35]	chr10	417538	5	INTRON	INTRON	FHIP2A	ENSG00000151553.15	ENST00000369250.7:ENST00000369248.9	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	3.94529	4.332495	4.7197	0.0693433	0.00568521	0.184298	0.0678837
chr12	50459340	50459439	5136935	0	+	0.343434	(0.32,0.35]	chr12	484429	45	INTRON	INTRON	LARP4	ENSG00000161813.23	ENST00000293618.12:ENST00000429001.7:ENST00000398473.7:ENST00000522085.5:ENST00000518444.5:ENST00000518561.5:ENST00000347328.9:ENST00000520064.2	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	3.94529	4.332495	4.7197	0.0693433	0.00568521	0.184298	0.0678837
chr12	108699935	108700034	5406460	0	-	0.343434	(0.32,0.35]	chr12	516015	37	INTRON	INTRON	CORO1C	ENSG00000110880.11	ENST00000261401.8:ENST00000420959.6:ENST00000541050.5:ENST00000549384.5:ENST00000550542.5:ENST00000549772.5:ENST00000552871.5:ENST00000547294.5:ENST00000550032.5:ENST00000551550.5:ENST00000546571.5:ENST00000551044.1:ENST00000547170.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	29	2	3.94529	4.332495	4.7197	0.0693433	0.00568521	0.184298	0.0678837
chr2	197418208	197418308	1306849	0	-	0.34	(0.32,0.35]	chr2	136723	3	SS5_PROX	SS5_PROX:INTRON	SF3B1	ENSG00000115524.17	ENST00000652026.1:ENST00000652738.1:ENST00000335508.11:ENST00000470268.2:ENST00000482158.1:ENST00000409915.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	29	2	3.94529	4.332495	4.7197	0.0693433	0.00568521	0.184298	0.0678837
chr3	58114702	58114801	1438502	0	+	0.323232	(0.32,0.35]	chr3	151924	20	INTRON	INTRON	FLNB	ENSG00000136068.16	ENST00000358537.7:ENST00000429972.6:ENST00000490882.5:ENST00000295956.9:ENST00000684506.1:ENST00000684607.1:ENST00000682871.1:ENST00000682868.1:ENST00000684107.1:ENST00000493452.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	29	2	3.94529	4.332495	4.7197	0.0693433	0.00568521	0.184298	0.0678837
chr3	130963484	130963581	1503628	0	+	0.329897	(0.32,0.35]	chr3	157272	7	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	ATP2C1	ENSG00000017260.20	ENST00000504381.5:ENST00000505330.5:ENST00000507488.6:ENST00000508532.5:ENST00000533801.6:ENST00000510168.6:ENST00000513801.5:ENST00000504948.5:ENST00000328560.12:ENST00000428331.6:ENST00000422190.6:ENST00000359644.7:ENST00000504612.5:ENST00000515854.5:ENST00000514654.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	29	2	3.94529	4.332495	4.7197	0.0693433	0.00568521	0.184298	0.0678837
chr6	37465779	37465878	2856840	0	+	0.343434	(0.32,0.35]	chr6	270152	24	INTRON	INTRON	CMTR1	ENSG00000137200.13	ENST00000373451.9	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	3.94529	4.332495	4.7197	0.0693433	0.00568521	0.184298	0.0678837
chr6	47518720	47518820	2873975	0	+	0.34	(0.32,0.35]	chr6	272731	149	INTRON	INTRON	CD2AP	ENSG00000198087.7	ENST00000359314.5	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	3.94529	4.332495	4.7197	0.0693433	0.00568521	0.184298	0.0678837
chr6	132772206	132772249	3222551	0	-	0.325581	(0.32,0.35]	chr6	299591	1	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	SLC18B1	ENSG00000146409.12	ENST00000275227.9:ENST00000647932.1:ENST00000650278.1:ENST00000650136.1:ENST00000650298.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	29	2	3.94529	4.332495	4.7197	0.0693433	0.00568521	0.184298	0.0678837
chr7	40030667	40030767	3311434	0	+	0.34	(0.32,0.35]	chr7	307507	283	INTRON	INTRON	CDK13	ENSG00000065883.17	ENST00000340829.10:ENST00000181839.10:ENST00000613626.4:ENST00000646039.1:ENST00000643859.1:ENST00000484589.2:ENST00000643915.1:ENST00000647453.1:ENST00000645470.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	29	2	3.94529	4.332495	4.7197	0.0693433	0.00568521	0.184298	0.0678837
chr7	116258411	116258504	3382600	0	+	0.333333	(0.32,0.35]	chr7	316883	11	UTR3	UTR3:EXON_MRNA	TES	ENSG00000135269.18	ENST00000358204.9:ENST00000393481.6	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	3.94529	4.332495	4.7197	0.0693433	0.00568521	0.184298	0.0678837
chr9	112577048	112577148	4186692	0	+	0.33	(0.32,0.35]	chr9	381821	14	INTRON	INTRON	KIAA1958	ENSG00000165185.15	ENST00000337530.11:ENST00000536272.5:ENST00000374244.3	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	3.94529	4.332495	4.7197	0.0693433	0.00568521	0.184298	0.0678837
chr1	180471399	180471499	595521	0	-	0.32	(0.28,0.32]	chr1	71198	408	INTRON	INTRON	ACBD6	ENSG00000230124.8	ENST00000645415.1:ENST00000642319.1:ENST00000367595.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	29	2	4.14214	4.332235000000001	4.52233	0.0579756	0.0129279	0.167723	0.0990564
chr14	37097885	37097985	5877266	0	-	0.29	(0.28,0.32]	chr14	558013	2225	INTRON	INTRON	SLC25A21	ENSG00000183032.12	ENST00000331299.6:ENST00000555449.5:ENST00000557611.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	29	2	4.14214	4.332235000000001	4.52233	0.0579756	0.0129279	0.167723	0.0990564
chr15	28297516	28297616	6123817	0	-	0.29	(0.28,0.32]	chr15	583394	41	INTRON	INTRON	HERC2	ENSG00000128731.18	ENST00000261609.13:ENST00000564734.5:ENST00000564383.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	29	2	4.14214	4.332235000000001	4.52233	0.0579756	0.0129279	0.167723	0.0990564
chr15	90776949	90777049	6101524	0	+	0.31	(0.28,0.32]	chr15	580921	70	INTRON	INTRON	BLM	ENSG00000197299.13	ENST00000355112.8:ENST00000648453.1:ENST00000681142.1:ENST00000560509.5:ENST00000559724.5:ENST00000680772.1:ENST00000560136.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	29	2	4.14214	4.332235000000001	4.52233	0.0579756	0.0129279	0.167723	0.0990564
chr16	18828985	18829085	6457054	0	-	0.29	(0.28,0.32]	chr16	622618	3	SS5_PROX	SS5_PROX:INTRON	SMG1	ENSG00000157106.18	ENST00000446231.7:ENST00000565324.5	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	4.14214	4.332235000000001	4.52233	0.0579756	0.0129279	0.167723	0.0990564
chr2	43594560	43594658	1109420	0	-	0.306122	(0.28,0.32]	chr2	118911	13	INTRON	INTRON	THADA	ENSG00000115970.19	ENST00000405975.7:ENST00000398653.5:ENST00000405006.8:ENST00000408045.7:ENST00000404790.5:ENST00000403856.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	29	2	4.14214	4.332235000000001	4.52233	0.0579756	0.0129279	0.167723	0.0990564
chr2	174139831	174139931	1269764	0	-	0.32	(0.28,0.32]	chr2	134275	157	INTRON	INTRON	OLA1	ENSG00000138430.16	ENST00000284719.8:ENST00000344357.9:ENST00000428402.6:ENST00000409546.5:ENST00000429575.1	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	4.14214	4.332235000000001	4.52233	0.0579756	0.0129279	0.167723	0.0990564
chr4	26322397	26322497	1936686	0	+	0.31	(0.28,0.32]	chr4	194349	1	SS5_PROX	SS5_PROX:INTRON	RBPJ	ENSG00000168214.22	ENST00000512351.5:ENST00000681799.1:ENST00000681403.1:ENST00000342295.6:ENST00000512671.6:ENST00000506956.5:ENST00000345843.8:ENST00000361572.10:ENST00000514380.5:ENST00000514807.5:ENST00000348160.9:ENST00000681506.1:ENST00000509158.6:ENST00000691085.1:ENST00000692303.1:ENST00000681856.1:ENST00000513182.5:ENST00000681025.1:ENST00000681679.1:ENST00000680210.1:ENST00000355476.8:ENST00000680140.1:ENST00000511401.5:ENST00000680511.1:ENST00000510778.7:ENST00000679698.1:ENST00000679469.1:ENST00000681484.1:ENST00000505958.6:ENST00000507561.5:ENST00000514730.5:ENST00000507574.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	29	2	4.14214	4.332235000000001	4.52233	0.0579756	0.0129279	0.167723	0.0990564
chr5	72896057	72896157	2387945	0	+	0.29	(0.28,0.32]	chr5	230469	7	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	TNPO1	ENSG00000083312.19	ENST00000680533.1:ENST00000337273.10:ENST00000680025.1:ENST00000523768.5:ENST00000681711.1:ENST00000679378.1:ENST00000506351.6:ENST00000605210.1:ENST00000680111.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	29	2	4.14214	4.332235000000001	4.52233	0.0579756	0.0129279	0.167723	0.0990564
chr6	7311870	7311966	3053379	0	-	0.291667	(0.28,0.32]	chr6	283982	15	INTRON	INTRON	SSR1	ENSG00000124783.14	ENST00000474597.5:ENST00000650389.1:ENST00000244763.9:ENST00000397511.6:ENST00000489567.5:ENST00000479365.5:ENST00000462112.1:ENST00000488834.5:ENST00000483409.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	29	2	4.14214	4.332235000000001	4.52233	0.0579756	0.0129279	0.167723	0.0990564
chr7	32925984	32926083	3515747	0	-	0.30303	(0.28,0.32]	chr7	327814	42	INTRON	INTRON	RP9P	ENSG00000205763.14	ENST00000381639.3:ENST00000450133.5:ENST00000685019.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	29	2	4.14214	4.332235000000001	4.52233	0.0579756	0.0129279	0.167723	0.0990564
chr7	73456951	73457050	3554431	0	-	0.30303	(0.28,0.32]	chr7	330741	56	INTRON	INTRON	BAZ1B	ENSG00000009954.11	ENST00000339594.9:ENST00000404251.1	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	4.14214	4.332235000000001	4.52233	0.0579756	0.0129279	0.167723	0.0990564
chr7	93257864	93257964	3354903	0	+	0.32	(0.28,0.32]	chr7	312718	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	VPS50	ENSG00000004766.17	ENST00000544910.5:ENST00000251739.9:ENST00000305866.10:ENST00000441602.5:ENST00000458530.1:ENST00000649152.1:ENST00000436177.5:ENST00000476413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	29	2	4.14214	4.332235000000001	4.52233	0.0579756	0.0129279	0.167723	0.0990564
chr7	133632540	133632640	3421976	0	+	0.31	(0.28,0.32]	chr7	319395	20	INTRON	INTRON	EXOC4	ENSG00000131558.15	ENST00000253861.5:ENST00000479839.6:ENST00000483800.5:ENST00000469115.5:ENST00000489931.5:ENST00000482089.5:ENST00000460346.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	29	2	4.14214	4.332235000000001	4.52233	0.0579756	0.0129279	0.167723	0.0990564
chr9	7058776	7058876	4103191	0	+	0.32	(0.28,0.32]	chr9	373774	92	INTRON	INTRON	KDM4C	ENSG00000107077.19	ENST00000536108.5:ENST00000381306.7:ENST00000381309.8:ENST00000543771.5:ENST00000428870.6:ENST00000420847.2:ENST00000495890.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	29	2	4.14214	4.332235000000001	4.52233	0.0579756	0.0129279	0.167723	0.0990564
chr9	132651947	132652047	4368105	0	-	0.32	(0.28,0.32]	chr9	401667	1	SS5_PROX	SS5_PROX:INTRON	DDX31	ENSG00000125485.18	ENST00000372159.8:ENST00000310532.7	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	4.14214	4.332235000000001	4.52233	0.0579756	0.0129279	0.167723	0.0990564
chr9	132321832	132321932	4366828	0	-	0.39	(0.378,0.408]	chr9	401462	96	INTRON	INTRON	SETX	ENSG00000107290.14	ENST00000224140.6	protein_coding	protein_coding	protein_coding	protein_coding	2	83	2	2.73557	4.332145000000001	5.92872	0.00360869	1.93094e-5	0.0533855	0.00337681
chr1	100602	100701	352382	0	-	0.292929	(0.28,0.32]	chr1	40774	80	INTRON	INTRON	ENSG00000238009	ENSG00000238009.6	ENST00000466430.5:ENST00000477740.5	lncRNA	lncRNA	lncRNA	lncRNA	0	29	2	4.23719	4.331745	4.4263	0.0330296	0.0264147	0.133816	0.133676
chr1	21142891	21142991	393290	0	-	0.29	(0.28,0.32]	chr1	46836	299	INTRON	INTRON	EIF4G3	ENSG00000075151.24	ENST00000374935.7:ENST00000602326.6:ENST00000685872.1:ENST00000686579.1:ENST00000688741.1:ENST00000400422.6:ENST00000634879.2:ENST00000693470.1:ENST00000685814.1:ENST00000356916.7:ENST00000682284.1:ENST00000438975.5:ENST00000411888.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	29	2	4.23719	4.331745	4.4263	0.0330296	0.0264147	0.133816	0.133676
chr11	28124813	28124911	4752322	0	+	0.285714	(0.28,0.32]	chr11	440086	5	INTRON	INTRON	METTL15	ENSG00000169519.21	ENST00000406787.7:ENST00000403099.5:ENST00000451385.6:ENST00000407364.8:ENST00000532947.2:ENST00000634627.1:ENST00000634973.1:ENST00000303459.10:ENST00000634721.1:ENST00000634762.1:ENST00000437814.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	29	2	4.23719	4.331745	4.4263	0.0330296	0.0264147	0.133816	0.133676
chr11	63905987	63906087	4801562	0	+	0.32	(0.28,0.32]	chr11	445122	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	MARK2	ENSG00000072518.22	ENST00000377810.8:ENST00000361128.9:ENST00000508192.5:ENST00000350490.11:ENST00000402010.8:ENST00000502399.7:ENST00000425897.3:ENST00000679216.1:ENST00000513765.7:ENST00000677688.1:ENST00000509502.6:ENST00000408948.7:ENST00000676602.1:ENST00000678482.1:ENST00000678662.1:ENST00000679321.1:ENST00000677303.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	29	2	4.23719	4.331745	4.4263	0.0330296	0.0264147	0.133816	0.133676
chr12	112067280	112067380	5414998	0	-	0.29	(0.28,0.32]	chr12	517189	55	INTRON	INTRON	NAA25	ENSG00000111300.10	ENST00000261745.9:ENST00000552527.5:ENST00000549711.5:ENST00000551858.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	29	2	4.23719	4.331745	4.4263	0.0330296	0.0264147	0.133816	0.133676
chr13	111288943	111289042	5546075	0	+	0.30303	(0.28,0.32]	chr13	529885	1	INTRON	INTRON	ARHGEF7	ENSG00000102606.19	ENST00000317133.9:ENST00000375739.6:ENST00000375741.6:ENST00000646102.2:ENST00000218789.9:ENST00000375736.8:ENST00000426073.6:ENST00000375723.5:ENST00000478679.5	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	4.23719	4.331745	4.4263	0.0330296	0.0264147	0.133816	0.133676
chr14	69148034	69148133	5916063	0	-	0.292929	(0.28,0.32]	chr14	562034	42	INTRON	INTRON	DCAF5	ENSG00000139990.18	ENST00000341516.10:ENST00000554215.5:ENST00000556847.5:ENST00000557386.5:ENST00000556111.1:ENST00000389997.10:ENST00000554681.1:ENST00000553943.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	29	2	4.23719	4.331745	4.4263	0.0330296	0.0264147	0.133816	0.133676
chr15	64374857	64374956	6205024	0	-	0.30303	(0.28,0.32]	chr15	591795	7	INTRON	INTRON	ENSG00000259316:PCLAF	ENSG00000259316.12:ENSG00000166803.14	ENST00000634318.1:ENST00000635704.1:ENST00000634529.1:ENST00000635511.1:ENST00000635605.1:ENST00000635593.1:ENST00000635320.1:ENST00000300035.9:ENST00000380258.6:ENST00000559519.5:ENST00000558008.3:ENST00000558043.5:ENST00000560234.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	29	2	4.23719	4.331745	4.4263	0.0330296	0.0264147	0.133816	0.133676
chr16	14265490	14265588	6303060	0	+	0.306122	(0.28,0.32]	chr16	602760	42	UTR3	UTR3:EXON_MRNA	MRTFB	ENSG00000186260.17	ENST00000571589.6:ENST00000318282.9:ENST00000572588.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	29	2	4.23719	4.331745	4.4263	0.0330296	0.0264147	0.133816	0.133676
chr17	59124628	59124728	6802092	0	-	0.31	(0.28,0.32]	chr17	671848	2	SS3_PROX	SS3_PROX:INTRON	SKA2	ENSG00000182628.13	ENST00000330137.12:ENST00000580541.1:ENST00000578105.1:ENST00000578519.5:ENST00000583927.1:ENST00000581068.5:ENST00000437036.6:ENST00000583380.5:ENST00000583976.1:ENST00000584089.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	29	2	4.23719	4.331745	4.4263	0.0330296	0.0264147	0.133816	0.133676
chr2	148672727	148672827	892032	0	+	0.31	(0.28,0.32]	chr2	98781	268	INTRON	INTRON	EPC2	ENSG00000135999.12	ENST00000457184.5:ENST00000258484.11:ENST00000409654.5:ENST00000397424.2	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	4.23719	4.331745	4.4263	0.0330296	0.0264147	0.133816	0.133676
chr4	127887061	127887144	2041680	0	+	0.301205	(0.28,0.32]	chr4	202681	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PLK4	ENSG00000142731.11	ENST00000270861.10:ENST00000515069.5:ENST00000513090.5:ENST00000507249.5:ENST00000514379.5	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	4.23719	4.331745	4.4263	0.0330296	0.0264147	0.133816	0.133676
chr5	5439004	5439101	2314888	0	+	0.319588	(0.28,0.32]	chr5	224130	13	INTRON	INTRON	ICE1	ENSG00000164151.12	ENST00000512608.5:ENST00000296564.9	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	4.23719	4.331745	4.4263	0.0330296	0.0264147	0.133816	0.133676
chr5	32545793	32545893	2334349	0	+	0.31	(0.28,0.32]	chr5	225337	87	INTRON	INTRON	SUB1	ENSG00000113387.12	ENST00000506237.5:ENST00000512913.5:ENST00000513013.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	29	2	4.23719	4.331745	4.4263	0.0330296	0.0264147	0.133816	0.133676
chr5	134960681	134960779	2492270	0	+	0.285714	(0.28,0.32]	chr5	238098	1	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	PCBD2	ENSG00000132570.15	ENST00000512783.5:ENST00000254908.11:ENST00000504352.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	29	2	4.23719	4.331745	4.4263	0.0330296	0.0264147	0.133816	0.133676
chr6	111001280	111001379	2939497	0	+	0.292929	(0.28,0.32]	chr6	276871	11	INTRON	INTRON	RPF2	ENSG00000197498.13	ENST00000368864.8:ENST00000441448.7:ENST00000607388.1:ENST00000425871.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	29	2	4.23719	4.331745	4.4263	0.0330296	0.0264147	0.133816	0.133676
chr7	140819286	140819386	3662674	0	-	0.29	(0.28,0.32]	chr7	340085	99	INTRON	INTRON	BRAF	ENSG00000157764.14	ENST00000496384.7:ENST00000644969.2:ENST00000644120.1:ENST00000646891.1:ENST00000644905.1:ENST00000642228.1:ENST00000288602.11:ENST00000646730.1:ENST00000497784.2:ENST00000642272.1:ENST00000642808.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	29	2	4.23719	4.331745	4.4263	0.0330296	0.0264147	0.133816	0.133676
chr8	26408876	26408974	3717197	0	+	0.295918	(0.28,0.32]	chr8	345489	1	INTRON	INTRON	BNIP3L	ENSG00000104765.16	ENST00000380629.7:ENST00000520077.5:ENST00000523949.5:ENST00000523515.5:ENST00000520409.5:ENST00000518611.5:ENST00000521254.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	29	2	4.23719	4.331745	4.4263	0.0330296	0.0264147	0.133816	0.133676
chrX	102819793	102819892	7696410	0	+	0.292929	(0.28,0.32]	chrX	787610	23	INTRON	INTRON	LINC00630	ENSG00000223546.8	ENST00000661018.1:ENST00000431616.5:ENST00000668536.1:ENST00000440496.5:ENST00000420471.5:ENST00000663114.1:ENST00000658813.1:ENST00000435966.1:ENST00000656628.1	lncRNA	lncRNA	lncRNA	lncRNA	0	29	2	4.23719	4.331745	4.4263	0.0330296	0.0264147	0.133816	0.133676
chr7	107175940	107176039	3378427	0	+	0.515152	(0.476,0.515]	chr7	316324	8	INTRON	INTRON	HBP1	ENSG00000105856.14	ENST00000468410.5:ENST00000478930.5:ENST00000464009.1:ENST00000222574.9:ENST00000468401.1:ENST00000497535.5:ENST00000485846.5	protein_coding	protein_coding	protein_coding	protein_coding	3	103	2	3.45701	4.33173	5.20645	0.00136049	1.2733e-5	0.0336321	0.00265846
chr10	912300	912400	4542393	0	-	0.33	(0.32,0.35]	chr10	419304	89	INTRON	INTRON	LARP4B	ENSG00000107929.16	ENST00000316157.8:ENST00000690516.1:ENST00000476529.5:ENST00000406525.6:ENST00000481118.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	29	2	4.04364	4.331265	4.61889	0.034181	0.0166646	0.146815	0.102621
chr13	23335929	23336029	5559689	0	-	0.35	(0.32,0.35]	chr13	531316	58	CDS	CDS:EXON_MRNA:INTRON	SACS	ENSG00000151835.17	ENST00000683210.1:ENST00000684325.1:ENST00000682775.1:ENST00000684497.1:ENST00000402364.1:ENST00000682944.1:ENST00000382292.9:ENST00000455470.6:ENST00000423156.2:ENST00000683367.1:ENST00000684196.1:ENST00000683489.1:ENST00000684163.1:ENST00000684385.1:ENST00000683270.1:ENST00000683680.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	29	2	4.04364	4.331265	4.61889	0.034181	0.0166646	0.146815	0.102621
chr17	61961487	61961587	6809815	0	-	0.34	(0.32,0.35]	chr17	672839	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MED13	ENSG00000108510.10	ENST00000397786.7	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	4.04364	4.331265	4.61889	0.034181	0.0166646	0.146815	0.102621
chr17	81880013	81880112	6850191	0	-	0.343434	(0.32,0.35]	chr17	678398	17	EXON_LNCRNA	EXON_LNCRNA	ENSG00000263731	ENSG00000263731.1	ENST00000582866.1	lncRNA	lncRNA	lncRNA	lncRNA	0	29	2	4.04364	4.331265	4.61889	0.034181	0.0166646	0.146815	0.102621
chr6	20679757	20679857	2829839	0	+	0.35	(0.32,0.35]	chr6	265655	300	INTRON	INTRON	CDKAL1	ENSG00000145996.11	ENST00000274695.8:ENST00000378610.1	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	4.04364	4.331265	4.61889	0.034181	0.0166646	0.146815	0.102621
chr7	77849854	77849953	3344463	0	+	0.323232	(0.32,0.35]	chr7	311490	92	INTRON	INTRON	PHTF2	ENSG00000006576.17	ENST00000422959.7:ENST00000416283.6:ENST00000307305.12:ENST00000424760.5:ENST00000415251.6:ENST00000275575.11:ENST00000450574.5:ENST00000248550.7	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	4.04364	4.331265	4.61889	0.034181	0.0166646	0.146815	0.102621
chr11	47531060	47531160	4950182	0	-	0.46	(0.44,0.476]	chr11	464246	64	INTRON	INTRON	CELF1	ENSG00000149187.19	ENST00000310513.10:ENST00000687097.1:ENST00000531165.5:ENST00000530151.5:ENST00000525841.5:ENST00000526419.1	protein_coding	protein_coding	protein_coding	protein_coding	1	57	2	3.08591	4.33123	5.57655	0.00481262	3.3967e-4	0.0638089	0.0170719
chr2	108862763	108862863	848884	0	+	0.36	(0.35,0.378]	chr2	95010	54	INTRON	INTRON	CCDC138	ENSG00000163006.12	ENST00000412964.6:ENST00000409529.6:ENST00000295124.9:ENST00000608781.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	29	2	3.94291	4.33122	4.71953	0.0374229	0.0103314	0.155878	0.0850389
chr20	1329979	1330079	7220941	0	+	0.37	(0.35,0.378]	chr20	733750	38	INTRON	INTRON	SDCBP2-AS1	ENSG00000234684.8	ENST00000665859.2:ENST00000609470.6:ENST00000609745.1:ENST00000658491.1:ENST00000607947.1:ENST00000670879.1:ENST00000609285.6:ENST00000446423.2:ENST00000653665.1	lncRNA	lncRNA	lncRNA	lncRNA	0	29	2	3.94291	4.33122	4.71953	0.0374229	0.0103314	0.155878	0.0850389
chr20	5607296	5607395	7312308	0	-	0.515152	(0.476,0.515]	chr20	744619	25	INTRON	INTRON	GPCPD1	ENSG00000125772.14	ENST00000379019.7:ENST00000481690.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	76	2	3.20821	4.331055	5.4539	5.16081e-4	3.05489e-4	0.0208667	0.0155972
chr1	24843425	24843524	47050	0	+	0.353535	(0.35,0.378]	chr1	5799	26	UTR3	UTR3:EXON_MRNA:INTRON	CLIC4	ENSG00000169504.15	ENST00000488683.1:ENST00000374379.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	79	2	3.08631	4.3309750000000005	5.57564	6.13845e-4	5.93654e-4	0.0225024	0.0223951
chr1	39466960	39467057	78651	0	+	0.319588	(0.28,0.32]	chr1	10210	20	EXON_MRNA	EXON_MRNA:INTRON	MACF1	ENSG00000127603.32	ENST00000361689.7:ENST00000567887.5:ENST00000372915.8:ENST00000564288.6:ENST00000671089.2:ENST00000372925.6:ENST00000289893.8:ENST00000686067.1:ENST00000683517.1:ENST00000691623.1:ENST00000360115.8:ENST00000446276.5:ENST00000686657.1:ENST00000442046.5:ENST00000422234.2:ENST00000462496.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	65	2	3.50836	4.33097	5.15358	0.0052282	0.00117393	0.0633615	0.0316446
chr10	119054471	119054569	4704642	0	-	0.44898	(0.44,0.476]	chr10	433947	28	INTRON	INTRON	EIF3A	ENSG00000107581.13	ENST00000369144.8:ENST00000541549.2	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	3.97626	4.33095	4.68564	0.0300538	0.00816201	0.142135	0.0766625
chr16	70149348	70149446	6383810	0	+	0.510204	(0.476,0.515]	chr16	613553	4	INTRON	INTRON	PDPR	ENSG00000090857.14	ENST00000288050.9:ENST00000568530.5:ENST00000398122.7:ENST00000565186.5:ENST00000562100.5:ENST00000569042.5:ENST00000567046.5:ENST00000563930.5:ENST00000564563.1:ENST00000567896.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	27	2	4.13586	4.33093	4.526	0.031846	0.00699701	0.13151	0.0754576
chr17	13008428	13008527	6726389	0	-	0.50505	(0.476,0.515]	chr17	660086	20	INTRON	INTRON	ELAC2	ENSG00000006744.19	ENST00000338034.9:ENST00000484122.5:ENST00000395962.6:ENST00000426905.7:ENST00000584650.5:ENST00000446899.5:ENST00000609345.1:ENST00000609101.5:ENST00000580504.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	27	2	4.13586	4.33093	4.526	0.031846	0.00699701	0.13151	0.0754576
chr19	4657044	4657144	7120893	0	-	0.51	(0.476,0.515]	chr19	716457	150	INTRON	INTRON	MYDGF	ENSG00000074842.8	ENST00000599761.5	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.13586	4.33093	4.526	0.031846	0.00699701	0.13151	0.0754576
chr22	27942567	27942667	7493016	0	+	0.51	(0.476,0.515]	chr22	764498	20	INTRON	INTRON	TTC28-AS1	ENSG00000235954.8	ENST00000430853.5:ENST00000434221.6:ENST00000417497.6:ENST00000424161.6:ENST00000419253.1:ENST00000454741.5:ENST00000659843.1:ENST00000665376.1:ENST00000453632.6:ENST00000662682.1:ENST00000655332.1:ENST00000454996.7:ENST00000665505.1:ENST00000435348.6:ENST00000664946.1:ENST00000425112.2:ENST00000654553.1:ENST00000669227.1:ENST00000452612.5:ENST00000688200.1:ENST00000662424.1:ENST00000654619.1	lncRNA	lncRNA	lncRNA	lncRNA	0	27	2	4.13586	4.33093	4.526	0.031846	0.00699701	0.13151	0.0754576
chr9	69056055	69056154	4137339	0	+	0.50505	(0.476,0.515]	chr9	377034	24	INTRON	INTRON	FXN	ENSG00000165060.15	ENST00000644653.1:ENST00000484259.3:ENST00000396366.6:ENST00000377270.8:ENST00000498653.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	27	2	4.13586	4.33093	4.526	0.031846	0.00699701	0.13151	0.0754576
chr1	61710336	61710436	468224	0	-	0.54	(0.515,0.57]	chr1	56576	5	INTRON	INTRON	TM2D1	ENSG00000162604.12	ENST00000606498.5:ENST00000294613.9:ENST00000371180.6:ENST00000488206.5:ENST00000468586.5:ENST00000371178.5:ENST00000494926.5:ENST00000496465.1:ENST00000371177.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	68	2	3.00693	4.330835	5.65474	7.26845e-4	9.00945e-5	0.0245647	0.00844245
chr3	6650429	6650529	1357748	0	+	0.53	(0.515,0.57]	chr3	142522	660	INTRON	INTRON	ENSG00000189229	ENSG00000189229.12	ENST00000433639.1:ENST00000655754.1:ENST00000658468.1:ENST00000669512.1:ENST00000667028.1:ENST00000655541.1:ENST00000668643.1:ENST00000671568.1:ENST00000671036.1:ENST00000669798.1:ENST00000655753.1:ENST00000655856.1:ENST00000658398.1:ENST00000661518.1:ENST00000661279.1:ENST00000655495.1:ENST00000663041.1:ENST00000659827.1:ENST00000667716.1:ENST00000668416.1:ENST00000658133.1:ENST00000342990.4:ENST00000660054.1:ENST00000671370.1	lncRNA	lncRNA	lncRNA	lncRNA	0	27	2	3.89856	4.3305	4.76244	0.0280943	0.00362147	0.137011	0.0533855
chr10	18627385	18627485	4570473	0	-	0.48	(0.476,0.515]	chr10	421519	107	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7:ENST00000606425.2	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.21964	4.33046	4.44128	0.0167715	0.0151924	0.110511	0.0994339
chr11	93743149	93743248	4848511	0	+	0.494949	(0.476,0.515]	chr11	452226	5	INTRON	INTRON	C11orf54	ENSG00000182919.15	ENST00000528288.5:ENST00000617482.4:ENST00000540113.5:ENST00000331239.8:ENST00000533585.5:ENST00000528099.5:ENST00000530620.5:ENST00000354421.8:ENST00000527003.5:ENST00000531650.5:ENST00000530279.5	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.21964	4.33046	4.44128	0.0167715	0.0151924	0.110511	0.0994339
chr12	98519110	98519210	5198654	0	+	0.5	(0.476,0.515]	chr12	491795	22	INTRON	INTRON	TMPO	ENSG00000120802.14	ENST00000548911.1:ENST00000556029.6:ENST00000343315.9:ENST00000266732.8:ENST00000393053.6:ENST00000546828.6:ENST00000261210.9:ENST00000549938.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	27	2	4.21964	4.33046	4.44128	0.0167715	0.0151924	0.110511	0.0994339
chr13	114292192	114292292	5550937	0	+	0.48	(0.476,0.515]	chr13	530573	4	SS5_PROX	SS5_PROX:INTRON	UPF3A	ENSG00000169062.15	ENST00000375299.8:ENST00000351487.5:ENST00000480362.5:ENST00000474056.5:ENST00000493727.5:ENST00000475218.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	27	2	4.21964	4.33046	4.44128	0.0167715	0.0151924	0.110511	0.0994339
chr19	35276300	35276400	7054795	0	+	0.51	(0.476,0.515]	chr19	703934	4	SS5_PROX	SS5_PROX:INTRON	USF2	ENSG00000105698.16	ENST00000222305.8:ENST00000343550.9:ENST00000595068.5:ENST00000379134.7:ENST00000594064.5:ENST00000607959.5:ENST00000596380.5:ENST00000599471.5:ENST00000597671.5:ENST00000599625.1:ENST00000600341.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	27	2	4.21964	4.33046	4.44128	0.0167715	0.0151924	0.110511	0.0994339
chr2	232707645	232707745	1037342	0	+	0.49	(0.476,0.515]	chr2	110616	18	INTRON	INTRON	GIGYF2	ENSG00000204120.16	ENST00000476995.5:ENST00000629305.2:ENST00000427233.5:ENST00000428883.5:ENST00000409480.5:ENST00000456491.5:ENST00000484409.1:ENST00000492910.5:ENST00000373563.9:ENST00000409547.5:ENST00000430720.5:ENST00000425040.5:ENST00000421433.5:ENST00000475359.6:ENST00000490612.5:ENST00000464402.5:ENST00000488629.5:ENST00000423659.5:ENST00000409196.7:ENST00000488734.5:ENST00000409451.7:ENST00000463554.5:ENST00000440945.5:ENST00000429187.5:ENST00000482666.5:ENST00000490229.5:ENST00000483164.5:ENST00000464805.5:ENST00000489328.1:ENST00000424038.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	27	2	4.21964	4.33046	4.44128	0.0167715	0.0151924	0.110511	0.0994339
chr20	32383436	32383536	7256077	0	+	0.5	(0.476,0.515]	chr20	737076	110	INTRON	INTRON	ASXL1	ENSG00000171456.21	ENST00000651418.1:ENST00000375687.10:ENST00000613218.4:ENST00000644587.1:ENST00000620121.4:ENST00000646985.1:ENST00000643168.1:ENST00000306058.9:ENST00000645688.1:ENST00000470145.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	27	2	4.21964	4.33046	4.44128	0.0167715	0.0151924	0.110511	0.0994339
chr21	25741272	25741372	7389084	0	+	0.5	(0.476,0.515]	chr21	752857	3	SS3_PROX	SS3_PROX:INTRON	GABPA	ENSG00000154727.11	ENST00000354828.7:ENST00000400075.4:ENST00000487266.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	27	2	4.21964	4.33046	4.44128	0.0167715	0.0151924	0.110511	0.0994339
chr22	41898248	41898348	7526669	0	+	0.48	(0.476,0.515]	chr22	769448	2	SS3_PROX	SS3_PROX:INTRON	SREBF2	ENSG00000198911.12	ENST00000612482.4:ENST00000361204.9:ENST00000424354.5:ENST00000491541.1:ENST00000463741.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	27	2	4.21964	4.33046	4.44128	0.0167715	0.0151924	0.110511	0.0994339
chr4	150729063	150729163	2268866	0	-	0.49	(0.476,0.515]	chr4	220726	450	INTRON	INTRON	LRBA	ENSG00000198589.14	ENST00000357115.9:ENST00000651943.2:ENST00000510413.5:ENST00000509835.5:ENST00000651695.1:ENST00000651035.1:ENST00000507224.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	27	2	4.21964	4.33046	4.44128	0.0167715	0.0151924	0.110511	0.0994339
chr7	129234136	129234236	3409563	0	+	0.48	(0.476,0.515]	chr7	318776	83	INTRON	INTRON	AHCYL2	ENSG00000158467.17	ENST00000325006.8:ENST00000446544.6	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.21964	4.33046	4.44128	0.0167715	0.0151924	0.110511	0.0994339
chr9	98791604	98791703	4302202	0	-	0.494949	(0.476,0.515]	chr9	395654	6	INTRON	INTRON	ANKS6	ENSG00000165138.18	ENST00000375019.6:ENST00000353234.5:ENST00000634393.1:ENST00000471846.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	27	2	4.21964	4.33046	4.44128	0.0167715	0.0151924	0.110511	0.0994339
chr9	120524287	120524386	4333320	0	-	0.494949	(0.476,0.515]	chr9	398097	53	INTRON	INTRON	CDK5RAP2	ENSG00000136861.19	ENST00000349780.9:ENST00000360190.8:ENST00000687279.1:ENST00000687633.1:ENST00000684780.1:ENST00000687311.1:ENST00000690814.1:ENST00000686842.1:ENST00000693714.1:ENST00000693386.1:ENST00000692746.1:ENST00000686376.1:ENST00000692155.1:ENST00000690646.1:ENST00000693433.1:ENST00000688923.1:ENST00000473282.6:ENST00000480112.5:ENST00000685866.1:ENST00000689688.1:ENST00000416449.6:ENST00000691504.1:ENST00000360822.8:ENST00000693728.1:ENST00000483412.5:ENST00000690474.1:ENST00000693137.1:ENST00000693702.1:ENST00000481266.2:ENST00000687024.1:ENST00000482047.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	27	2	4.21964	4.33046	4.44128	0.0167715	0.0151924	0.110511	0.0994339
chr16	16635386	16635485	6312218	0	+	0.464646	(0.44,0.476]	chr16	604106	15	INTRON	INTRON	ENSG00000260126	ENSG00000260126.2	ENST00000567465.2	lncRNA	lncRNA	lncRNA	lncRNA	1	60	2	3.31011	4.330215	5.35032	0.00259023	3.02713e-4	0.0452934	0.0155054
chr19	46866107	46866207	7082286	0	+	0.41	(0.408,0.44]	chr19	708677	45	INTRON	INTRON	ARHGAP35	ENSG00000160007.19	ENST00000672722.1	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	3.83494	4.33012	4.8253	0.0411442	0.0056738	0.161534	0.0653997
chr6	57333432	57333532	2879260	0	+	0.44	(0.408,0.44]	chr6	273381	70	INTRON	INTRON	PRIM2	ENSG00000146143.19	ENST00000419977.4:ENST00000672107.1:ENST00000615550.5:ENST00000671770.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	29	2	3.83494	4.33012	4.8253	0.0411442	0.0056738	0.161534	0.0653997
chr7	103084659	103084757	3372941	0	+	0.428571	(0.408,0.44]	chr7	315662	2	INTRON	INTRON	ARMC10	ENSG00000170632.14	ENST00000441711.6:ENST00000454559.5:ENST00000428183.6:ENST00000541300.5:ENST00000425331.5:ENST00000323735.10:ENST00000306450.5:ENST00000323716.8:ENST00000434153.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	29	2	3.83494	4.33012	4.8253	0.0411442	0.0056738	0.161534	0.0653997
chr1	8875288	8875352	374271	0	-	0.34375	(0.32,0.35]	chr1	43649	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ENO1	ENSG00000074800.16	ENST00000234590.10:ENST00000647408.1:ENST00000646370.2:ENST00000645609.1:ENST00000497492.1:ENST00000646660.1:ENST00000646680.1:ENST00000646906.1:ENST00000646156.1:ENST00000643438.1:ENST00000489867.2:ENST00000486051.5:ENST00000492343.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	90	2	2.78391	4.330095	5.87628	0.00347285	5.28936e-5	0.052042	0.00592337
chr15	87498849	87498949	6254541	0	-	0.38	(0.378,0.408]	chr15	596814	108	INTRON	INTRON	ENSG00000259560	ENSG00000259560.2	ENST00000665121.1:ENST00000656130.1:ENST00000560439.1	lncRNA	lncRNA	lncRNA	lncRNA	1	57	2	3.33026	4.329969999999999	5.32968	0.00189824	0.00119786	0.0402736	0.0315806
chr1	235395514	235395614	339955	0	+	0.44	(0.408,0.44]	chr1	39551	150	INTRON	INTRON	TBCE	ENSG00000285053.1:ENSG00000284770.2	ENST00000644055.1:ENST00000645655.1:ENST00000647428.1:ENST00000643418.1:ENST00000646624.1:ENST00000647186.1:ENST00000646528.1:ENST00000645351.1:ENST00000643410.1:ENST00000645205.1:ENST00000645836.1:ENST00000642503.1:ENST00000646281.1:ENST00000645069.1:ENST00000644680.1:ENST00000643758.1:ENST00000645578.1:ENST00000642431.1:ENST00000644604.1:ENST00000651186.1:ENST00000643125.1:ENST00000406207.5:ENST00000642463.1:ENST00000645899.1:ENST00000647233.1:ENST00000642926.1:ENST00000644578.1:ENST00000647418.1:ENST00000645372.1:ENST00000645582.1:ENST00000643994.1:ENST00000647407.1:ENST00000642610.2:ENST00000644037.1:ENST00000646463.1:ENST00000366601.8:ENST00000643524.1:ENST00000646536.1:ENST00000643142.1:ENST00000644838.1:ENST00000646286.1:ENST00000646186.1:ENST00000643615.1:ENST00000543662.4:ENST00000646848.1:ENST00000647332.1:ENST00000647489.1:ENST00000644625.1:ENST00000646384.1:ENST00000645551.1:ENST00000646821.1:ENST00000472011.6:ENST00000643238.1:ENST00000646104.1:ENST00000645662.1:ENST00000643993.1:ENST00000645964.1:ENST00000642339.1:ENST00000644217.1:ENST00000642372.1:ENST00000646929.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	56	2	3.36378	4.32995	5.29612	0.0016048	0.00113523	0.0367961	0.0307488
chr1	233638628	233638727	338787	0	+	0.606061	(0.57,1]	chr1	39436	8	INTRON	INTRON	KCNK1	ENSG00000135750.15	ENST00000366621.8:ENST00000472190.5:ENST00000366620.5:ENST00000487728.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	21	2	4.16881	4.32994	4.49107	0.00574776	0.00220544	0.0681402	0.0417893
chr17	30776799	30776898	6590264	0	+	0.585859	(0.57,1]	chr17	640892	5	INTRON	INTRON	SUZ12P1	ENSG00000264538.7	ENST00000582329.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	21	2	4.16881	4.32994	4.49107	0.00574776	0.00220544	0.0681402	0.0417893
chr17	82247896	82247994	6852559	0	-	0.581633	(0.57,1]	chr17	679118	20	EXON_MRNA	EXON_MRNA:INTRON	CSNK1D	ENSG00000141551.15	ENST00000584672.1:ENST00000398519.9:ENST00000314028.11:ENST00000581241.5:ENST00000584377.5:ENST00000392334.6:ENST00000578501.5:ENST00000581737.1:ENST00000580784.5:ENST00000269361.11:ENST00000403276.7:ENST00000580565.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	21	2	4.16881	4.32994	4.49107	0.00574776	0.00220544	0.0681402	0.0417893
chr16	71906460	71906559	6386716	0	+	0.484848	(0.476,0.515]	chr16	614084	24	INTRON	INTRON	IST1	ENSG00000182149.21	ENST00000568581.5:ENST00000540296.5:ENST00000544564.5:ENST00000541571.6:ENST00000538104.5:ENST00000535424.5:ENST00000606369.5:ENST00000537613.5:ENST00000424485.6:ENST00000566536.5:ENST00000378799.11:ENST00000538565.5:ENST00000329908.12:ENST00000538850.5:ENST00000541918.5:ENST00000378798.9:ENST00000534994.5:ENST00000539186.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	56	2	3.40003	4.32974	5.25945	0.00139193	0.00111445	0.0341261	0.0306328
chr1	212750595	212750695	634368	0	-	0.39	(0.378,0.408]	chr1	74949	106	INTRON	INTRON	NSL1	ENSG00000117697.15	ENST00000366977.8:ENST00000366978.5:ENST00000366976.3:ENST00000626725.1	protein_coding	protein_coding	protein_coding	protein_coding	2	83	2	2.80155	4.32967	5.85779	0.00278307	2.83884e-5	0.0469265	0.00422437
chr1	110001332	110001431	181615	0	+	0.474747	(0.44,0.476]	chr1	20025	154	INTRON	INTRON	AHCYL1	ENSG00000168710.18	ENST00000369799.10:ENST00000393614.8:ENST00000475081.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	27	2	4.12843	4.329385	4.53034	0.0337192	0.00672609	0.134145	0.0738715
chr10	31927186	31927286	4590306	0	-	0.45	(0.44,0.476]	chr10	423177	163	INTRON	INTRON	ARHGAP12	ENSG00000165322.18	ENST00000344936.7:ENST00000375245.8:ENST00000396144.8:ENST00000375250.9	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.12843	4.329385	4.53034	0.0337192	0.00672609	0.134145	0.0738715
chr11	61327749	61327848	4956453	0	-	0.464646	(0.44,0.476]	chr11	465751	3	INTRON	INTRON	DDB1	ENSG00000167986.15	ENST00000301764.12:ENST00000680367.1:ENST00000681803.1:ENST00000680717.1:ENST00000679712.1:ENST00000680357.1:ENST00000680075.1:ENST00000679588.1:ENST00000680602.1:ENST00000680881.1:ENST00000681188.1:ENST00000535283.6:ENST00000681935.1:ENST00000680250.1:ENST00000540166.5:ENST00000679855.1:ENST00000681368.1:ENST00000543658.5:ENST00000681067.1:ENST00000680096.1:ENST00000543162.2:ENST00000537120.5:ENST00000539426.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	27	2	4.12843	4.329385	4.53034	0.0337192	0.00672609	0.134145	0.0738715
chr15	68089788	68089888	6056311	0	+	0.45	(0.44,0.476]	chr15	576567	15	INTRON	INTRON	PIAS1	ENSG00000033800.14	ENST00000564915.5:ENST00000249636.11:ENST00000562190.1:ENST00000545237.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	27	2	4.12843	4.329385	4.53034	0.0337192	0.00672609	0.134145	0.0738715
chr16	68300924	68301023	6372249	0	+	0.474747	(0.44,0.476]	chr16	612394	37	UTR3	UTR3:EXON_MRNA	SLC7A6	ENSG00000103064.15	ENST00000618043.4:ENST00000648130.1:ENST00000219343.11:ENST00000379152.7:ENST00000566454.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	27	2	4.12843	4.329385	4.53034	0.0337192	0.00672609	0.134145	0.0738715
chr17	31964149	31964249	6595949	0	+	0.46	(0.44,0.476]	chr17	641554	161	INTRON	INTRON	SUZ12	ENSG00000178691.11	ENST00000322652.10:ENST00000580398.1	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.12843	4.329385	4.53034	0.0337192	0.00672609	0.134145	0.0738715
chr2	27466844	27466944	1087579	0	-	0.47	(0.44,0.476]	chr2	116611	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	IFT172	ENSG00000138002.16	ENST00000675690.1:ENST00000260570.8:ENST00000507184.5:ENST00000675410.1:ENST00000674932.1:ENST00000676119.1:ENST00000674824.1:ENST00000674701.1:ENST00000675826.1:ENST00000676101.1:ENST00000675963.1:ENST00000675618.1:ENST00000675729.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	27	2	4.12843	4.329385	4.53034	0.0337192	0.00672609	0.134145	0.0738715
chr21	36371973	36372073	7404230	0	+	0.46	(0.44,0.476]	chr21	754368	2	SS3_PROX	SS3_PROX:INTRON	MORC3	ENSG00000159256.13	ENST00000400485.6:ENST00000487909.5:ENST00000546482.5:ENST00000549948.5:ENST00000551788.5:ENST00000551367.5:ENST00000552581.5:ENST00000547657.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	27	2	4.12843	4.329385	4.53034	0.0337192	0.00672609	0.134145	0.0738715
chr22	20135027	20135126	7478757	0	+	0.444444	(0.44,0.476]	chr22	762819	26	INTRON	INTRON	ZDHHC8	ENSG00000099904.16	ENST00000436518.5:ENST00000334554.12:ENST00000405930.3:ENST00000320602.11:ENST00000468112.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	27	2	4.12843	4.329385	4.53034	0.0337192	0.00672609	0.134145	0.0738715
chr3	39101754	39101846	1659105	0	-	0.467391	(0.44,0.476]	chr3	170289	3	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	GORASP1	ENSG00000114745.15	ENST00000479927.6:ENST00000319283.8:ENST00000469471.2:ENST00000489587.2:ENST00000422110.7:ENST00000453680.6:ENST00000695445.1:ENST00000695592.1:ENST00000452389.7:ENST00000695424.1:ENST00000695442.1:ENST00000695412.1:ENST00000492064.6:ENST00000695414.1:ENST00000441302.6:ENST00000695597.1:ENST00000695594.1:ENST00000695441.1:ENST00000695446.1:ENST00000695587.1:ENST00000695430.1:ENST00000419156.6:ENST00000411813.6:ENST00000695590.1:ENST00000695595.1:ENST00000473827.6:ENST00000476334.2:ENST00000695428.1:ENST00000695429.1:ENST00000695427.1:ENST00000695426.1:ENST00000695425.1:ENST00000437458.4:ENST00000695589.1:ENST00000695588.1:ENST00000695591.1:ENST00000695431.1:ENST00000479124.2:ENST00000695443.1:ENST00000695415.1:ENST00000441081.2:ENST00000470910.6:ENST00000695444.1:ENST00000431601.6:ENST00000427459.4:ENST00000695416.1:ENST00000466443.1:ENST00000493751.2:ENST00000488479.1:ENST00000695417.1:ENST00000413243.4:ENST00000493938.6:ENST00000695613.1:ENST00000416741.6:ENST00000695397.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	56	2	3.45957	4.329185	5.1988	0.00151532	0.00106385	0.0352794	0.0300133
chr4	82840742	82840841	2179567	0	-	0.313131	(0.28,0.32]	chr4	214267	94	INTRON	INTRON	SEC31A	ENSG00000138674.17	ENST00000395310.7:ENST00000513858.5:ENST00000348405.8:ENST00000503937.5:ENST00000448323.5:ENST00000311785.11:ENST00000509142.5:ENST00000443462.6:ENST00000500777.6:ENST00000505472.5:ENST00000355196.6:ENST00000508502.5:ENST00000264405.9:ENST00000505984.5:ENST00000511338.1:ENST00000515749.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	123	2	2.78411	4.329175	5.87424	4.43011e-4	3.40018e-4	0.0194241	0.0164308
chr13	39039135	39039211	5469469	0	+	0.434211	(0.408,0.44]	chr13	524090	1	CDS	CDS:UTR5:EXON_MRNA	NHLRC3	ENSG00000188811.14	ENST00000473371.1:ENST00000470258.5:ENST00000379599.6:ENST00000379600.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	57	2	3.63785	4.329065	5.02028	0.00303216	4.70012e-4	0.0493883	0.0196294
chr1	52686430	52686529	458596	0	-	0.464646	(0.44,0.476]	chr1	55119	21	UTR3	UTR3:EXON_MRNA	COA7	ENSG00000162377.6	ENST00000371538.5	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.22393	4.32885	4.43377	0.0162803	0.0162322	0.109464	0.101453
chr1	150307047	150307147	221321	0	+	0.47	(0.44,0.476]	chr1	24942	122	INTRON	INTRON	MRPS21	ENSG00000266472.6	ENST00000614145.5:ENST00000581066.2	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.22393	4.32885	4.43377	0.0162803	0.0162322	0.109464	0.101453
chr12	125009244	125009343	5245224	0	+	0.464646	(0.44,0.476]	chr12	498718	149	INTRON	INTRON	BRI3BP	ENSG00000184992.13	ENST00000341446.9:ENST00000671775.2:ENST00000672415.1	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.22393	4.32885	4.43377	0.0162803	0.0162322	0.109464	0.101453
chr2	37220773	37220873	1096622	0	-	0.46	(0.44,0.476]	chr2	117602	3	SS3_PROX	SS3_PROX:INTRON	CEBPZ	ENSG00000115816.15	ENST00000234170.10	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.22393	4.32885	4.43377	0.0162803	0.0162322	0.109464	0.101453
chr2	108749723	108749818	847722	0	+	0.452632	(0.44,0.476]	chr2	94833	2	INTRON	INTRON	RANBP2	ENSG00000153201.16	ENST00000283195.11	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.22393	4.32885	4.43377	0.0162803	0.0162322	0.109464	0.101453
chr2	111316542	111316640	1210007	0	-	0.459184	(0.44,0.476]	chr2	128857	16	INTRON	INTRON	MIR4435-2HG	ENSG00000172965.17	ENST00000645030.2:ENST00000642191.1:ENST00000673798.1:ENST00000645051.2:ENST00000673649.1:ENST00000673962.1:ENST00000674132.1:ENST00000669658.1:ENST00000669917.1:ENST00000661559.1:ENST00000653687.1:ENST00000667670.1:ENST00000609220.2:ENST00000656760.1:ENST00000609902.6:ENST00000666683.1:ENST00000674070.1:ENST00000662335.1:ENST00000664422.1:ENST00000673775.1:ENST00000662889.1:ENST00000665096.1:ENST00000674092.1:ENST00000673958.1:ENST00000673770.1:ENST00000673961.1:ENST00000658936.1:ENST00000662635.1:ENST00000666204.1:ENST00000659458.1:ENST00000664443.1:ENST00000670295.1:ENST00000661655.1:ENST00000666390.1:ENST00000659079.1:ENST00000660442.1:ENST00000664009.1:ENST00000439362.6:ENST00000654473.1:ENST00000664999.1:ENST00000673728.1:ENST00000659791.1:ENST00000666144.1:ENST00000659933.1:ENST00000670715.1:ENST00000656303.1:ENST00000666367.1:ENST00000666652.1:ENST00000669050.1:ENST00000667218.1:ENST00000656067.1:ENST00000653568.1:ENST00000643013.1:ENST00000673866.1:ENST00000673700.1:ENST00000443467.6:ENST00000451884.6:ENST00000669875.1:ENST00000673653.1:ENST00000673988.1:ENST00000661945.1:ENST00000669515.1:ENST00000431385.6:ENST00000655573.1:ENST00000656416.1:ENST00000662384.1:ENST00000674037.1:ENST00000432818.5:ENST00000674013.1:ENST00000673843.1:ENST00000661707.1:ENST00000444301.5	lncRNA	lncRNA	lncRNA	lncRNA	0	27	2	4.22393	4.32885	4.43377	0.0162803	0.0162322	0.109464	0.101453
chr22	40065278	40065378	7517052	0	+	0.46	(0.44,0.476]	chr22	768084	193	INTRON	INTRON	TNRC6B	ENSG00000100354.21	ENST00000301923.13:ENST00000441751.5:ENST00000402203.5	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.22393	4.32885	4.43377	0.0162803	0.0162322	0.109464	0.101453
chr3	131475338	131475437	1819304	0	-	0.454545	(0.44,0.476]	chr3	182910	37	INTRON	INTRON	MRPL3	ENSG00000114686.9	ENST00000264995.8:ENST00000511168.5:ENST00000425847.6:ENST00000507669.5	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.22393	4.32885	4.43377	0.0162803	0.0162322	0.109464	0.101453
chr5	16456926	16457025	2568622	0	-	0.444444	(0.44,0.476]	chr5	246169	34	INTRON	INTRON	ZNF622	ENSG00000173545.5	ENST00000308683.3	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.22393	4.32885	4.43377	0.0162803	0.0162322	0.109464	0.101453
chr8	128025809	128025909	3862392	0	+	0.47	(0.44,0.476]	chr8	355521	87	INTRON	INTRON	PVT1	ENSG00000249859.13	ENST00000667305.1:ENST00000690350.1:ENST00000653522.1:ENST00000661830.1:ENST00000657289.1:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000657211.1:ENST00000653845.1:ENST00000651587.1:ENST00000692980.1:ENST00000654324.1:ENST00000657693.1:ENST00000666080.1:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000662410.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000657356.1:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000667714.1:ENST00000654105.1:ENST00000664995.1:ENST00000670714.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000668123.1:ENST00000666776.1:ENST00000659912.1:ENST00000670532.1:ENST00000523068.2:ENST00000671088.1:ENST00000663461.1:ENST00000513868.6:ENST00000692433.1:ENST00000523190.7:ENST00000685606.1:ENST00000690788.1:ENST00000685634.1:ENST00000653990.1:ENST00000655783.1:ENST00000656411.1:ENST00000664742.1:ENST00000655099.1:ENST00000662709.1:ENST00000512617.7:ENST00000660122.1:ENST00000666452.1:ENST00000659666.1:ENST00000659892.1:ENST00000521600.5:ENST00000522875.5:ENST00000653497.1:ENST00000668098.1:ENST00000659106.1:ENST00000666147.1:ENST00000658350.1:ENST00000656999.1:ENST00000664610.1:ENST00000671092.1:ENST00000653853.1	lncRNA	lncRNA	lncRNA	lncRNA	0	27	2	4.22393	4.32885	4.43377	0.0162803	0.0162322	0.109464	0.101453
chr11	78117586	78117686	4998113	0	-	0.42	(0.408,0.44]	chr11	472349	24	INTRON	INTRON	ALG8	ENSG00000159063.14	ENST00000679559.1:ENST00000680398.1:ENST00000681221.1:ENST00000527099.2:ENST00000681489.1:ENST00000525783.6:ENST00000529139.6:ENST00000680761.1:ENST00000525870.6:ENST00000680866.1:ENST00000680223.1:ENST00000526737.6:ENST00000681575.1:ENST00000299626.10:ENST00000680467.1:ENST00000679497.1:ENST00000681351.1:ENST00000679697.1:ENST00000680580.1:ENST00000526849.6:ENST00000680256.1:ENST00000680797.1:ENST00000681723.1:ENST00000680142.1:ENST00000679685.1:ENST00000681384.1:ENST00000679874.1:ENST00000679444.1:ENST00000680459.1:ENST00000681699.1:ENST00000679986.1:ENST00000680063.1:ENST00000530608.6:ENST00000681765.1:ENST00000681225.1:ENST00000681417.1:ENST00000530910.6:ENST00000680329.1:ENST00000679581.1:ENST00000524925.2:ENST00000681853.1:ENST00000376156.7:ENST00000679648.1:ENST00000680101.1:ENST00000680829.1:ENST00000680499.1:ENST00000525761.3:ENST00000532440.6:ENST00000680996.1:ENST00000532306.6:ENST00000680399.1:ENST00000679539.1:ENST00000615266.5:ENST00000681957.1:ENST00000532552.2:ENST00000680643.1:ENST00000530454.6:ENST00000525755.6:ENST00000532050.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	57	2	3.08738	4.328555	5.56973	0.00478231	3.81714e-4	0.0636201	0.0181283
chr2	8960732	8960832	1063138	0	-	0.36	(0.35,0.378]	chr2	113381	17	INTRON	INTRON	MBOAT2	ENSG00000143797.12	ENST00000305997.8:ENST00000486484.5:ENST00000477073.5:ENST00000462696.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	104	2	2.23309	4.32831	6.42353	0.00930277	1.52654e-6	0.0817766	7.40003e-4
chr1	246926445	246926545	681908	0	-	0.27	[0,0.28]	chr1	80043	77	INTRON	INTRON	AHCTF1	ENSG00000153207.16	ENST00000648844.2:ENST00000326225.3:ENST00000366508.5	protein_coding	protein_coding	protein_coding	protein_coding	1	69	2	3.2223	4.32829	5.43428	0.00422777	0.00400834	0.0595466	0.0551303
chr19	16439662	16439762	7149357	0	-	0.4	(0.378,0.408]	chr19	722325	14	INTRON	INTRON	EPS15L1	ENSG00000127527.14	ENST00000602022.5:ENST00000455140.7:ENST00000592031.5:ENST00000248070.10:ENST00000535753.6:ENST00000594975.5:ENST00000597937.5:ENST00000593760.5:ENST00000596037.5:ENST00000597559.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	57	2	3.27907	4.32823	5.37739	0.0023379	0.0010014	0.0442989	0.0288906
chr10	22319844	22319938	4406589	0	+	0.340426	(0.32,0.35]	chr10	406637	7	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	COMMD3:COMMD3-BMI1	ENSG00000148444.16:ENSG00000269897.5	ENST00000602574.5:ENST00000475460.6:ENST00000376836.8:ENST00000602390.5:ENST00000479958.6:ENST00000456711.5:ENST00000444869.5:ENST00000496071.5:ENST00000489125.2:ENST00000463409.6:ENST00000463688.6:ENST00000448361.5:ENST00000417470.1:ENST00000483684.1:ENST00000602395.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	61	2	3.23331	4.32818	5.42305	0.00315414	0.00149027	0.0515261	0.035
chr21	18702542	18702642	7434828	0	-	0.27	[0,0.28]	chr21	758112	899	INTRON	INTRON	MIR548XHG	ENSG00000224141.6	ENST00000671206.1:ENST00000437492.6:ENST00000355189.7:ENST00000653218.1:ENST00000656413.1:ENST00000414582.1	lncRNA	lncRNA	lncRNA	lncRNA	1	70	2	2.95729	4.327975	5.69866	0.0101824	0.00175225	0.089002	0.0376491
chr1	28523657	28523757	57355	0	+	0.41	(0.408,0.44]	chr1	7407	43	INTRON	INTRON	RCC1	ENSG00000180198.17	ENST00000398958.6:ENST00000649185.1:ENST00000427469.5:ENST00000683442.1:ENST00000434290.6:ENST00000373833.10:ENST00000419074.5:ENST00000373832.5:ENST00000373831.7:ENST00000411533.5:ENST00000486790.2:ENST00000430407.1	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	3.97679	4.327865	4.67894	0.0299485	0.0087648	0.142135	0.0788605
chr10	50568872	50568972	4620139	0	-	0.41	(0.408,0.44]	chr10	425452	486	INTRON	INTRON	SGMS1	ENSG00000198964.14	ENST00000429490.5:ENST00000361781.7:ENST00000619438.4:ENST00000609445.5:ENST00000608287.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	28	2	3.97679	4.327865	4.67894	0.0299485	0.0087648	0.142135	0.0788605
chr15	20447137	20447235	6118333	0	-	0.428571	(0.408,0.44]	chr15	582406	7	INTRON	INTRON	HERC2P3	ENSG00000180229.12	ENST00000426501.5:ENST00000428453.5:ENST00000437318.5:ENST00000430598.5:ENST00000429257.5:ENST00000424611.5:ENST00000440441.5:ENST00000440774.1	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript:transcribed_unprocessed_pseudogene	0	28	2	3.97679	4.327865	4.67894	0.0299485	0.0087648	0.142135	0.0788605
chr15	27533969	27534068	5987800	0	+	0.414141	(0.408,0.44]	chr15	569232	12	UTR3	UTR3:EXON_MRNA	GABRG3	ENSG00000182256.13	ENST00000615808.5	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	3.97679	4.327865	4.67894	0.0299485	0.0087648	0.142135	0.0788605
chr17	43531675	43531775	6777291	0	-	0.41	(0.408,0.44]	chr17	667979	11	INTRON	INTRON	ETV4	ENSG00000175832.13	ENST00000538265.5:ENST00000319349.10:ENST00000393664.6:ENST00000545954.5:ENST00000545089.5:ENST00000591713.5	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	3.97679	4.327865	4.67894	0.0299485	0.0087648	0.142135	0.0788605
chr5	176161188	176161288	2774735	0	-	0.41	(0.408,0.44]	chr5	261215	16	INTRON	INTRON	ENSG00000248596:ENSG00000287579	ENSG00000248596.8:ENSG00000287579.1	ENST00000515403.5:ENST00000663646.1:ENST00000503307.2	lncRNA	lncRNA	lncRNA	lncRNA	0	28	2	3.97679	4.327865	4.67894	0.0299485	0.0087648	0.142135	0.0788605
chr9	127619245	127619345	4201265	0	+	0.43	(0.408,0.44]	chr9	383625	56	INTRON	INTRON	STXBP1	ENSG00000136854.24	ENST00000637521.2:ENST00000625363.2:ENST00000636509.2:ENST00000626539.3:ENST00000635950.2:ENST00000636962.2:ENST00000637953.1:ENST00000637464.2:ENST00000637173.2:ENST00000637060.2:ENST00000373302.8:ENST00000373299.5:ENST00000627871.2:ENST00000630492.2:ENST00000650920.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	28	2	3.97679	4.327865	4.67894	0.0299485	0.0087648	0.142135	0.0788605
chr9	137577069	137577169	4377607	0	-	0.41	(0.408,0.44]	chr9	403655	2	SS5_PROX	SS5_PROX:INTRON	DPH7	ENSG00000148399.13	ENST00000277540.7:ENST00000479650.5:ENST00000475100.5:ENST00000472113.5:ENST00000467768.5:ENST00000470855.5:ENST00000481839.5:ENST00000476303.1:ENST00000460572.1:ENST00000491359.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	28	2	3.97679	4.327865	4.67894	0.0299485	0.0087648	0.142135	0.0788605
chr1	175956920	175957020	589189	0	-	0.23	[0,0.28]	chr1	70870	93	INTRON	INTRON	COP1	ENSG00000143207.21	ENST00000367669.8:ENST00000367667.5:ENST00000461830.6:ENST00000367666.5:ENST00000649803.1:ENST00000308769.12	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	30	2	4.1879	4.327579999999999	4.46726	0.0427997	0.0396579	0.161534	0.148082
chr2	31976194	31976294	1090773	0	-	0.26	[0,0.28]	chr2	116913	130	INTRON	INTRON	MEMO1:DPY30	ENSG00000162959.14:ENSG00000162961.14	ENST00000295065.9:ENST00000446765.5:ENST00000404530.6:ENST00000490459.5:ENST00000426310.6:ENST00000413686.1:ENST00000407893.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	30	2	4.1879	4.327579999999999	4.46726	0.0427997	0.0396579	0.161534	0.148082
chr3	25649860	25649960	1642019	0	-	0.25	[0,0.28]	chr3	168598	40	INTRON	INTRON	TOP2B	ENSG00000077097.16	ENST00000264331.9:ENST00000435706.6:ENST00000424225.1	protein_coding	protein_coding	protein_coding	protein_coding	0	30	2	4.1879	4.327579999999999	4.46726	0.0427997	0.0396579	0.161534	0.148082
chr3	160424140	160424240	1544864	0	+	0.23	[0,0.28]	chr3	160748	3	SS5_PROX	SS5_PROX:INTRON	SMC4	ENSG00000113810.16	ENST00000357388.8:ENST00000469762.5:ENST00000469858.5:ENST00000462787.5:ENST00000344722.5:ENST00000462668.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	30	2	4.1879	4.327579999999999	4.46726	0.0427997	0.0396579	0.161534	0.148082
chr4	128132551	128132651	2043321	0	+	0.28	[0,0.28]	chr4	202908	88	INTRON	INTRON	LARP1B	ENSG00000138709.19	ENST00000326639.11:ENST00000508819.5:ENST00000649983.1:ENST00000507259.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	30	2	4.1879	4.327579999999999	4.46726	0.0427997	0.0396579	0.161534	0.148082
chr8	48031265	48031365	3752465	0	+	0.2	[0,0.28]	chr8	349044	223	INTRON	INTRON	UBE2V2	ENSG00000169139.12	ENST00000523432.5:ENST00000521346.5:ENST00000523111.7:ENST00000518360.5:ENST00000517630.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	30	2	4.1879	4.327579999999999	4.46726	0.0427997	0.0396579	0.161534	0.148082
chr20	32125820	32125920	7254469	0	+	0.49	(0.476,0.515]	chr20	736838	154	INTRON	INTRON	TM9SF4	ENSG00000101337.16	ENST00000398022.7:ENST00000442842.5:ENST00000450829.5:ENST00000217315.9:ENST00000417389.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	60	2	3.41728	4.327484999999999	5.23769	0.00165726	5.17244e-4	0.0369207	0.0203753
chr3	138783788	138783888	1830989	0	-	0.23	[0,0.28]	chr3	184056	133	INTRON	INTRON	PIK3CB	ENSG00000051382.9	ENST00000674063.1:ENST00000477593.5:ENST00000462898.5:ENST00000483968.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	69	2	3.2621000000000002	4.32716	5.39222	0.00453865	0.00367113	0.0595107	0.056059199999999997
chr2	241319034	241319130	1053638	0	+	0.270833	[0,0.28]	chr2	112195	3	INTRON	INTRON	SEPTIN2	ENSG00000168385.18	ENST00000391973.6:ENST00000428282.5:ENST00000492978.5:ENST00000360051.7:ENST00000407017.5:ENST00000445030.5:ENST00000428524.5:ENST00000469434.5:ENST00000616972.4:ENST00000495463.5:ENST00000482304.5:ENST00000475474.5:ENST00000401990.5:ENST00000469175.5:ENST00000407971.5:ENST00000461048.5:ENST00000457335.5:ENST00000436795.5:ENST00000494824.5:ENST00000411484.5:ENST00000462147.5:ENST00000434955.5:ENST00000466211.5:ENST00000391971.7:ENST00000402092.6:ENST00000484740.1:ENST00000473479.5:ENST00000464128.5:ENST00000441533.5:ENST00000467971.5:ENST00000425899.5:ENST00000443492.5:ENST00000437066.5:ENST00000429791.5:ENST00000420786.5:ENST00000475823.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	69	2	3.13926	4.32707	5.51488	0.00563224	0.00314116	0.0678837	0.0500389
chr16	1365259	1365357	6427464	0	-	0.489796	(0.476,0.515]	chr16	617784	22	UTR3	UTR3:EXON_MRNA:INTRON	UNKL	ENSG00000059145.19	ENST00000389221.9:ENST00000248104.11:ENST00000403703.5:ENST00000562537.1:ENST00000674376.1:ENST00000397464.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	56	2	3.2463	4.326995	5.40769	0.00262374	6.23078e-4	0.0470772	0.0229151
chr20	50917244	50917343	7355736	0	-	0.393939	(0.378,0.408]	chr20	750099	76	INTRON	INTRON	ADNP	ENSG00000101126.18	ENST00000621696.5:ENST00000673732.1:ENST00000396029.8:ENST00000644386.1:ENST00000396032.8:ENST00000645081.1:ENST00000642364.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	77	2	2.70298	4.32686	5.95074	0.00325723	8.87003e-5	0.0524329	0.00842626
chrX	74233801	74233900	7841010	0	-	0.323232	(0.32,0.35]	chrX	799709	8	INTRON	INTRON	FTX	ENSG00000230590.12	ENST00000603672.5:ENST00000430772.6:ENST00000602776.6:ENST00000638681.1:ENST00000652319.1:ENST00000661133.1:ENST00000652071.1:ENST00000602812.6:ENST00000651703.1:ENST00000653018.1:ENST00000658448.1:ENST00000662240.1:ENST00000652527.1:ENST00000651451.1:ENST00000657611.1:ENST00000660481.1:ENST00000659574.1:ENST00000661084.1:ENST00000662494.1:ENST00000670936.1:ENST00000602420.6:ENST00000658203.1:ENST00000638985.1:ENST00000691187.1:ENST00000603037.2:ENST00000641360.1:ENST00000687056.1:ENST00000654870.2:ENST00000652540.1:ENST00000652331.2:ENST00000652013.1:ENST00000669263.1:ENST00000657070.1:ENST00000665069.1:ENST00000651936.1:ENST00000652496.1:ENST00000653874.2:ENST00000661335.1:ENST00000664123.1:ENST00000658439.1:ENST00000666535.1:ENST00000652970.1:ENST00000423992.3:ENST00000665313.2:ENST00000651140.1:ENST00000660100.1:ENST00000693483.1	lncRNA	lncRNA	lncRNA	lncRNA	1	67	2	2.84812	4.326755	5.80539	0.0147575	7.5134e-5	0.0983813	0.00725287
chr6	13692788	13692888	3059035	0	-	0.44	(0.408,0.44]	chr6	284542	336	INTRON	INTRON	RANBP9	ENSG00000010017.13	ENST00000011619.6	protein_coding	protein_coding	protein_coding	protein_coding	1	60	2	3.15414	4.32674	5.49934	0.00469847	1.5076e-4	0.0600108	0.0106137
chr2	85007736	85007836	820629	0	+	0.39	(0.378,0.408]	chr2	91419	351	INTRON	INTRON	KCMF1	ENSG00000176407.18	ENST00000456682.1:ENST00000409785.9:ENST00000428691.5:ENST00000453448.1	protein_coding	protein_coding	protein_coding	protein_coding	2	76	2	2.86955	4.32664	5.78373	0.00159247	1.89312e-4	0.0367961	0.012565
chr1	710221	710320	357054	0	-	0.141414	[0,0.28]	chr1	41103	61	INTRON	INTRON	ENSG00000230021	ENSG00000230021.10	ENST00000419394.2:ENST00000634337.2:ENST00000635509.2:ENST00000648019.1:ENST00000440200.5:ENST00000441245.5	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	0	31	2	3.96122	4.326565	4.69191	0.0617993	0.0269474	0.193423	0.123442
chr11	220320	220417	4887999	0	-	0.123711	[0,0.28]	chr11	457314	9	INTRON	INTRON	SIRT3	ENSG00000142082.15	ENST00000382743.9:ENST00000529937.1:ENST00000532837.5:ENST00000525319.5:ENST00000524564.5:ENST00000532956.5:ENST00000529382.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	31	2	3.96122	4.326565	4.69191	0.0617993	0.0269474	0.193423	0.123442
chr17	80835221	80835321	6687702	0	+	0.28	[0,0.28]	chr17	653460	116	INTRON	INTRON	RPTOR	ENSG00000141564.15	ENST00000574767.5:ENST00000577161.5:ENST00000306801.8:ENST00000544334.6:ENST00000575542.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	31	2	3.96122	4.326565	4.69191	0.0617993	0.0269474	0.193423	0.123442
chr7	111484710	111484807	3623334	0	-	0.257732	[0,0.28]	chr7	337112	6	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000452895.5:ENST00000447215.5:ENST00000492938.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	31	2	3.96122	4.326565	4.69191	0.0617993	0.0269474	0.193423	0.123442
chr9	78015918	78016018	4271789	0	-	0.22	[0,0.28]	chr9	392880	932	INTRON	INTRON	GNAQ	ENSG00000156052.11	ENST00000286548.9:ENST00000411677.1	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	3.96122	4.326565	4.69191	0.0617993	0.0269474	0.193423	0.123442
chr1	3629174	3629269	3252	0	+	0.421053	(0.408,0.44]	chr1	681	7	UTR3	UTR3:EXON_MRNA	TPRG1L	ENSG00000158109.15	ENST00000378344.7:ENST00000344579.5	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.12187	4.3263750000000005	4.53088	0.0354689	0.00669275	0.137535	0.0738715
chr1	121238607	121238707	206602	0	+	0.41	(0.408,0.44]	chr1	22771	507	INTRON	INTRON	SRGAP2C	ENSG00000171943.12	ENST00000367123.8:ENST00000304465.7	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.12187	4.3263750000000005	4.53088	0.0354689	0.00669275	0.137535	0.0738715
chr1	179179867	179179967	592581	0	-	0.44	(0.408,0.44]	chr1	71074	369	INTRON	INTRON	ABL2	ENSG00000143322.21	ENST00000502732.6:ENST00000367623.8:ENST00000507173.5:ENST00000511413.5:ENST00000668691.1:ENST00000392043.4:ENST00000660584.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	27	2	4.12187	4.3263750000000005	4.53088	0.0354689	0.00669275	0.137535	0.0738715
chr13	72802113	72802213	5509554	0	+	0.42	(0.408,0.44]	chr13	527194	37	INTRON	INTRON	PIBF1	ENSG00000083535.16	ENST00000326291.11:ENST00000617689.4:ENST00000615625.1:ENST00000492803.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	27	2	4.12187	4.3263750000000005	4.53088	0.0354689	0.00669275	0.137535	0.0738715
chr2	24606225	24606325	710410	0	+	0.44	(0.408,0.44]	chr2	82224	213	INTRON	INTRON	NCOA1	ENSG00000084676.16	ENST00000348332.8:ENST00000496333.5:ENST00000406961.5:ENST00000405141.5:ENST00000407230.5:ENST00000483904.5:ENST00000288599.9:ENST00000395856.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	27	2	4.12187	4.3263750000000005	4.53088	0.0354689	0.00669275	0.137535	0.0738715
chr2	241506826	241506923	1348749	0	-	0.42268	(0.408,0.44]	chr2	141720	24	INTRON	INTRON	STK25	ENSG00000115694.15	ENST00000316586.9:ENST00000543554.5:ENST00000535007.5:ENST00000403346.7:ENST00000401869.5:ENST00000405883.7:ENST00000405585.5:ENST00000461760.1:ENST00000442307.5:ENST00000424537.5:ENST00000413760.5:ENST00000429279.5:ENST00000436402.5:ENST00000440109.5:ENST00000439101.5:ENST00000452891.5:ENST00000483603.5:ENST00000436917.5:ENST00000495372.1:ENST00000426941.1:ENST00000420551.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	27	2	4.12187	4.3263750000000005	4.53088	0.0354689	0.00669275	0.137535	0.0738715
chr3	196358045	196358145	1898907	0	-	0.43	(0.408,0.44]	chr3	190154	8	INTRON	INTRON	UBXN7	ENSG00000163960.12	ENST00000296328.9:ENST00000429160.1:ENST00000428095.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	27	2	4.12187	4.3263750000000005	4.53088	0.0354689	0.00669275	0.137535	0.0738715
chr5	71201355	71201454	2639659	0	-	0.414141	(0.408,0.44]	chr5	250870	32	INTRON	INTRON	GUSBP9	ENSG00000215630.6	ENST00000510138.2	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	0	27	2	4.12187	4.3263750000000005	4.53088	0.0354689	0.00669275	0.137535	0.0738715
chr7	6265380	6265480	3477312	0	-	0.43	(0.408,0.44]	chr7	325332	528	INTRON	INTRON	CYTH3	ENSG00000008256.16	ENST00000396741.3:ENST00000350796.8:ENST00000482460.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	27	2	4.12187	4.3263750000000005	4.53088	0.0354689	0.00669275	0.137535	0.0738715
chr12	122221784	122221880	5439672	0	-	0.3125	(0.28,0.32]	chr12	520184	13	EXON_MRNA	EXON_MRNA:INTRON	DIABLO	ENSG00000184047.20	ENST00000443649.9:ENST00000650715.1:ENST00000464942.7:ENST00000353548.11:ENST00000644227.1:ENST00000644509.1:ENST00000342392.3:ENST00000645569.1:ENST00000267169.11:ENST00000540535.6:ENST00000642640.1:ENST00000541273.6:ENST00000541656.6:ENST00000446652.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	64	2	3.35108	4.326305	5.30153	0.00332518	0.00221345	0.0512081	0.0435144
chrX	107127023	107127122	7859689	0	-	0.30303	(0.28,0.32]	chrX	801266	23	INTRON	INTRON	NUP62CL	ENSG00000198088.10	ENST00000372466.8:ENST00000484614.5:ENST00000432145.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	64	2	3.35108	4.326305	5.30153	0.00332518	0.00221345	0.0512081	0.0435144
chrX	41341961	41342046	7645734	0	+	0.435294	(0.408,0.44]	chrX	782508	1	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DDX3X	ENSG00000215301.11	ENST00000625837.2:ENST00000626301.2:ENST00000629785.2:ENST00000630255.2:ENST00000630370.2:ENST00000630858.2:ENST00000629496.3:ENST00000478993.5:ENST00000457138.7:ENST00000644876.2:ENST00000399959.7:ENST00000644074.1:ENST00000645338.1:ENST00000646196.1:ENST00000642793.1:ENST00000646940.1:ENST00000644307.1:ENST00000645561.1:ENST00000645080.1:ENST00000642597.1:ENST00000642722.1:ENST00000644109.1:ENST00000644958.1:ENST00000646122.1:ENST00000644513.1:ENST00000645589.1:ENST00000441189.4:ENST00000646822.1:ENST00000631641.2:ENST00000615742.4:ENST00000646223.1:ENST00000643963.1:ENST00000646319.1:ENST00000642624.1:ENST00000542215.5:ENST00000644073.1:ENST00000644677.1:ENST00000615313.5:ENST00000642322.1:ENST00000622198.5:ENST00000645120.1:ENST00000646107.1:ENST00000646627.1:ENST00000645253.1:ENST00000642589.1:ENST00000645380.1:ENST00000646390.1:ENST00000642424.1:ENST00000642161.1:ENST00000645574.1:ENST00000646679.1:ENST00000642763.1:ENST00000644260.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	75	2	3.12458	4.32608	5.52758	4.61817e-4	4.54953e-4	0.0196892	0.0194611
chr8	92877211	92877311	3990878	0	-	0.31	(0.28,0.32]	chr8	365359	21	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	FLJ46284	ENSG00000248858.7	ENST00000504861.2:ENST00000623616.1	lncRNA	TEC	lncRNA	TEC:lncRNA	1	70	2	2.91851	4.32598	5.73345	0.0130672	1.71668e-4	0.093385	0.0113605
chr2	65100753	65100852	1142668	0	-	0.292929	(0.28,0.32]	chr2	122180	23	INTRON	INTRON	RAB1A	ENSG00000138069.18	ENST00000649427.1:ENST00000494188.1:ENST00000409784.8:ENST00000409892.5:ENST00000409751.1:ENST00000398529.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	77	2	2.39347	4.32597	6.25847	0.0504457	1.29215e-5	0.156383	0.00266147
chr1	245766342	245766442	673284	0	-	0.44	(0.408,0.44]	chr1	79659	18	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000366517.5:ENST00000366516.5:ENST00000482592.5:ENST00000490107.6:ENST00000470510.5:ENST00000483072.5:ENST00000490322.1:ENST00000493441.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	27	2	4.22447	4.3258	4.42713	0.0173083	0.0161655	0.109464	0.104099
chr11	63713270	63713370	4800232	0	+	0.43	(0.408,0.44]	chr11	444942	80	INTRON	INTRON	RTN3	ENSG00000133318.14	ENST00000341307.6:ENST00000356000.7:ENST00000542238.5:ENST00000538995.1:ENST00000339997.8:ENST00000540798.5:ENST00000537981.5:ENST00000377819.10:ENST00000536011.5:ENST00000543123.1:ENST00000543552.5:ENST00000545432.5:ENST00000338850.5:ENST00000354497.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	27	2	4.22447	4.3258	4.42713	0.0173083	0.0161655	0.109464	0.104099
chr19	35651849	35651945	7055965	0	+	0.416667	(0.408,0.44]	chr19	704245	1	INTRON	INTRON	COX6B1	ENSG00000126267.11	ENST00000649813.2:ENST00000592141.6:ENST00000392201.1:ENST00000652250.1:ENST00000590618.1	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.22447	4.3258	4.42713	0.0173083	0.0161655	0.109464	0.104099
chr2	111441207	111441307	1211262	0	-	0.43	(0.408,0.44]	chr2	128900	3	SS5_PROX	SS5_PROX:INTRON	MIR4435-2HG	ENSG00000172965.17	ENST00000645030.2:ENST00000642191.1:ENST00000673798.1:ENST00000645051.2:ENST00000673649.1:ENST00000669658.1:ENST00000669917.1:ENST00000661559.1:ENST00000653687.1:ENST00000667670.1:ENST00000609220.2:ENST00000656760.1:ENST00000609902.6:ENST00000666683.1:ENST00000674070.1:ENST00000662335.1:ENST00000664422.1:ENST00000673775.1:ENST00000674092.1:ENST00000673958.1:ENST00000658936.1:ENST00000662635.1:ENST00000666204.1:ENST00000659458.1:ENST00000664443.1:ENST00000670295.1:ENST00000661655.1:ENST00000666390.1:ENST00000659079.1:ENST00000660442.1:ENST00000664009.1:ENST00000439362.6:ENST00000654473.1:ENST00000664999.1:ENST00000673728.1:ENST00000659791.1:ENST00000666144.1:ENST00000659933.1:ENST00000670715.1:ENST00000653568.1:ENST00000643013.1:ENST00000673866.1:ENST00000443467.6:ENST00000669875.1:ENST00000673653.1:ENST00000673988.1:ENST00000661945.1:ENST00000669515.1:ENST00000431385.6:ENST00000656416.1:ENST00000674037.1:ENST00000432818.5:ENST00000674013.1:ENST00000444301.5:ENST00000673964.1:ENST00000673845.1:ENST00000673756.1:ENST00000673960.1:ENST00000673804.1:ENST00000673632.1:ENST00000453478.2:ENST00000673937.1:ENST00000673654.1:ENST00000409569.2:ENST00000674087.1:ENST00000419736.5:ENST00000673840.1:ENST00000674045.1:ENST00000673821.1:ENST00000643766.1:ENST00000308604.5:ENST00000674026.1:ENST00000604981.5:ENST00000603310.5:ENST00000673894.1:ENST00000442293.5:ENST00000441075.1	lncRNA	lncRNA	lncRNA	lncRNA	0	27	2	4.22447	4.3258	4.42713	0.0173083	0.0161655	0.109464	0.104099
chr2	127739752	127739852	1225160	0	-	0.41	(0.408,0.44]	chr2	130486	13	INTRON	INTRON	WDR33	ENSG00000136709.12	ENST00000322313.9:ENST00000436787.5:ENST00000393006.5	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.22447	4.3258	4.42713	0.0173083	0.0161655	0.109464	0.104099
chr2	197489439	197489536	1307059	0	-	0.43299	(0.408,0.44]	chr2	136771	3	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HSPD1	ENSG00000144381.18	ENST00000388968.8:ENST00000426480.2:ENST00000345042.6:ENST00000452200.6:ENST00000679291.1:ENST00000677403.1:ENST00000678621.1:ENST00000678545.1:ENST00000676933.1:ENST00000678170.1:ENST00000476746.6:ENST00000678969.1:ENST00000428204.6:ENST00000418022.2:ENST00000439605.2:ENST00000440114.2:ENST00000461097.2:ENST00000677792.1:ENST00000678761.1:ENST00000677913.1:ENST00000677454.1:ENST00000491249.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	27	2	4.22447	4.3258	4.42713	0.0173083	0.0161655	0.109464	0.104099
chr3	11472733	11472833	1366421	0	+	0.42	(0.408,0.44]	chr3	143949	259	INTRON	INTRON	ATG7	ENSG00000197548.13	ENST00000693202.1:ENST00000435760.6:ENST00000685771.1:ENST00000354449.7:ENST00000354956.9:ENST00000446450.6:ENST00000427759.5:ENST00000446110.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	27	2	4.22447	4.3258	4.42713	0.0173083	0.0161655	0.109464	0.104099
chr3	52141776	52141875	1698389	0	-	0.434343	(0.408,0.44]	chr3	174597	31	INTRON	INTRON	POC1A	ENSG00000164087.8	ENST00000296484.7:ENST00000394970.6:ENST00000474012.1	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.22447	4.3258	4.42713	0.0173083	0.0161655	0.109464	0.104099
chr4	77869558	77869657	1979934	0	+	0.434343	(0.408,0.44]	chr4	198317	62	INTRON	INTRON	MRPL1	ENSG00000169288.18	ENST00000315567.13:ENST00000515625.1:ENST00000511521.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	27	2	4.22447	4.3258	4.42713	0.0173083	0.0161655	0.109464	0.104099
chr5	82119440	82119540	2404180	0	+	0.43	(0.408,0.44]	chr5	232128	76	INTRON	INTRON	ATG10	ENSG00000152348.16	ENST00000282185.8:ENST00000355178.8:ENST00000458350.7:ENST00000513443.5:ENST00000504770.5:ENST00000513634.1:ENST00000508814.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	27	2	4.22447	4.3258	4.42713	0.0173083	0.0161655	0.109464	0.104099
chr8	43105632	43105730	3746286	0	+	0.428571	(0.408,0.44]	chr8	348605	1	INTRON	INTRON	POMK	ENSG00000185900.11	ENST00000676193.1:ENST00000331373.10:ENST00000674937.1:ENST00000614426.2:ENST00000674782.1:ENST00000676178.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	27	2	4.22447	4.3258	4.42713	0.0173083	0.0161655	0.109464	0.104099
chr9	137754491	137754591	4224857	0	+	0.42	(0.408,0.44]	chr9	388270	2	SS5_PROX	SS5_PROX:INTRON	EHMT1	ENSG00000181090.21	ENST00000462484.5:ENST00000371394.6:ENST00000460843.6:ENST00000629335.2:ENST00000636027.1:ENST00000637161.1:ENST00000637261.1:ENST00000637977.1:ENST00000626066.2:ENST00000638071.1:ENST00000640639.1:ENST00000629808.2:ENST00000462942.3:ENST00000465566.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	27	2	4.22447	4.3258	4.42713	0.0173083	0.0161655	0.109464	0.104099
chr7	77628571	77628671	3342947	0	+	0.47	(0.44,0.476]	chr7	311398	5	INTRON	INTRON	PTPN12	ENSG00000127947.16	ENST00000248594.11:ENST00000415482.6:ENST00000435495.6:ENST00000407343.3	protein_coding	protein_coding	protein_coding	protein_coding	1	60	2	2.97451	4.32505	5.67559	0.00853825	6.34721e-5	0.0780043	0.00658818
chr11	33868454	33868552	4941802	0	-	0.408163	(0.378,0.408]	chr11	463041	32	INTRON	INTRON	LMO2	ENSG00000135363.12	ENST00000257818.3:ENST00000395833.7:ENST00000411482.1:ENST00000465614.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	57	2	3.47377	4.32502	5.17627	0.00208234	0.00103087	0.0411801	0.0294094
chr7	111228406	111228506	3620766	0	-	0.36	(0.35,0.378]	chr7	337093	2645	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	64	2	3.33403	4.324795	5.31556	0.00272701	4.97087e-4	0.0467523	0.0201536
chr3	170155686	170155786	1861569	0	-	0.38	(0.378,0.408]	chr3	186655	46	INTRON	INTRON	PHC3	ENSG00000173889.16	ENST00000495893.7:ENST00000494943.5:ENST00000467570.5:ENST00000484931.5:ENST00000479467.5:ENST00000466189.5:ENST00000475729.5:ENST00000474275.5:ENST00000472330.5:ENST00000465896.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	57	2	3.22599	4.324785	5.42358	0.00288652	8.39231e-4	0.0494641	0.0266487
chr12	122103360	122103460	5240108	0	+	0.47	(0.44,0.476]	chr12	497496	237	INTRON	INTRON	MLXIP	ENSG00000175727.14	ENST00000319080.12	protein_coding	protein_coding	protein_coding	protein_coding	1	56	2	3.2029	4.32455	5.4462	0.00308681	5.83686e-4	0.0510391	0.0223753
chr12	4553551	4553647	5067895	0	+	0.333333	(0.32,0.35]	chr12	478363	4	SS5_PROX	SS5_PROX:INTRON	RAD51AP1	ENSG00000111247.15	ENST00000536886.5:ENST00000398012.7:ENST00000228843.13:ENST00000352618.9:ENST00000442992.6:ENST00000535558.5:ENST00000544927.5:ENST00000536117.5:ENST00000544931.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	112	2	2.40664	4.323875	6.24111	0.00189533	5.18656e-5	0.0402736	0.00626846
chr2	61469849	61469949	1130545	0	-	0.35	(0.32,0.35]	chr2	121499	487	INTRON	INTRON	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000453133.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	63	2	3.68775	4.32373	4.95971	0.00663522	4.66127e-4	0.0703181	0.0195589
chr16	69448340	69448438	6379811	0	+	0.326531	(0.32,0.35]	chr16	613138	3	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	CYB5B	ENSG00000103018.18	ENST00000686649.1:ENST00000684784.1:ENST00000691260.1:ENST00000689149.1:ENST00000692677.1:ENST00000686167.1:ENST00000568342.3:ENST00000307892.13:ENST00000688840.1:ENST00000515314.7:ENST00000687677.1:ENST00000514123.5:ENST00000693607.1:ENST00000568237.2:ENST00000561792.7:ENST00000687780.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	66	2	3.03597	4.323605	5.61124	0.00832487	1.88018e-4	0.0774402	0.011951
chr10	12069387	12069487	4393377	0	+	0.53	(0.515,0.57]	chr10	405237	2	SS5_PROX	SS5_PROX:INTRON	DHTKD1	ENSG00000181192.12	ENST00000263035.9:ENST00000437298.1	protein_coding	protein_coding	protein_coding	protein_coding	1	54	2	2.9114	4.32351	5.73562	0.00826019	6.01042e-5	0.0813266	0.00680853
chr10	80512669	80512769	4476824	0	+	0.43	(0.408,0.44]	chr10	412105	4	SS5_PROX	SS5_PROX:INTRON	TSPAN14	ENSG00000108219.15	ENST00000429989.7:ENST00000481124.5:ENST00000372158.6:ENST00000372157.6:ENST00000372164.7:ENST00000341863.10:ENST00000372156.5:ENST00000616406.1	protein_coding	protein_coding	protein_coding	protein_coding	2	81	2	2.88913	4.32309	5.75705	0.00185044	4.13252e-5	0.0388609	0.00519938
chr1	100453019	100453118	173640	0	+	0.333333	(0.32,0.35]	chr1	18842	97	INTRON	INTRON	CDC14A	ENSG00000079335.20	ENST00000646665.1:ENST00000644844.1:ENST00000635056.2:ENST00000647005.1:ENST00000647203.1:ENST00000644676.1:ENST00000361544.11:ENST00000370124.8:ENST00000336454.5:ENST00000644813.1:ENST00000455467.6:ENST00000646563.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	28	2	4.273	4.322845	4.37269	0.0368357	0.0154102	0.138959	0.108569
chr1	202744575	202744673	620081	0	-	0.346939	(0.32,0.35]	chr1	73574	14	INTRON	INTRON	KDM5B	ENSG00000117139.18	ENST00000367265.9:ENST00000648338.1:ENST00000649542.1:ENST00000647757.1:ENST00000649400.1:ENST00000367264.7:ENST00000648473.1:ENST00000650569.1:ENST00000648056.1:ENST00000649230.1:ENST00000649770.1:ENST00000648469.1:ENST00000498276.2:ENST00000650417.1:ENST00000649089.1:ENST00000235790.9:ENST00000650422.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	28	2	4.273	4.322845	4.37269	0.0368357	0.0154102	0.138959	0.108569
chr10	92925242	92925342	4492391	0	+	0.33	(0.32,0.35]	chr10	413742	48	INTRON	INTRON	EXOC6	ENSG00000138190.17	ENST00000671701.1:ENST00000672817.1:ENST00000371552.8:ENST00000443748.6:ENST00000260762.10	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.273	4.322845	4.37269	0.0368357	0.0154102	0.138959	0.108569
chr11	3970080	3970180	4724613	0	+	0.35	(0.32,0.35]	chr11	437156	20	INTRON	INTRON	STIM1	ENSG00000167323.12	ENST00000525403.5:ENST00000526596.2:ENST00000300737.8:ENST00000616714.4:ENST00000527651.5:ENST00000532610.5:ENST00000532919.5:ENST00000530554.5:ENST00000524822.5:ENST00000528656.5:ENST00000525055.5:ENST00000532990.1	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.273	4.322845	4.37269	0.0368357	0.0154102	0.138959	0.108569
chr13	110705420	110705520	5650114	0	-	0.34	(0.32,0.35]	chr13	538301	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	CARS2	ENSG00000134905.17	ENST00000257347.9:ENST00000535398.5:ENST00000465145.5:ENST00000539269.5:ENST00000544488.5:ENST00000541443.5:ENST00000542126.5:ENST00000542709.5:ENST00000537394.5:ENST00000540629.5:ENST00000540785.1:ENST00000537412.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	28	2	4.273	4.322845	4.37269	0.0368357	0.0154102	0.138959	0.108569
chr15	27266141	27266241	5985105	0	+	0.35	(0.32,0.35]	chr15	569164	2390	INTRON	INTRON	GABRG3	ENSG00000182256.13	ENST00000615808.5:ENST00000555083.5	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.273	4.322845	4.37269	0.0368357	0.0154102	0.138959	0.108569
chr2	101842013	101842108	837512	0	+	0.347368	(0.32,0.35]	chr2	93952	17	INTRON	INTRON	MAP4K4	ENSG00000071054.17	ENST00000324219.9:ENST00000350878.9:ENST00000425019.6:ENST00000625522.3:ENST00000413150.6:ENST00000634702.1:ENST00000456652.5:ENST00000347699.8:ENST00000417294.5:ENST00000627726.3:ENST00000476609.1:ENST00000421882.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	28	2	4.273	4.322845	4.37269	0.0368357	0.0154102	0.138959	0.108569
chr2	231065237	231065334	1031507	0	+	0.329897	(0.32,0.35]	chr2	110127	22	INTRON	INTRON	PSMD1	ENSG00000173692.14	ENST00000677180.1:ENST00000677259.1:ENST00000676818.1:ENST00000679034.1:ENST00000677230.1:ENST00000678241.1:ENST00000676740.1:ENST00000678460.1:ENST00000619128.5:ENST00000677000.1:ENST00000678679.1:ENST00000678112.1:ENST00000409643.6:ENST00000677724.1:ENST00000679095.1:ENST00000676739.1:ENST00000678632.1:ENST00000677233.1:ENST00000678837.1:ENST00000676506.1:ENST00000431051.6:ENST00000308696.11:ENST00000440838.5:ENST00000678140.1:ENST00000373635.9:ENST00000677158.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	28	2	4.273	4.322845	4.37269	0.0368357	0.0154102	0.138959	0.108569
chr21	34115807	34115907	7401518	0	+	0.34	(0.32,0.35]	chr21	753975	97	INTRON	INTRON	MRPS6	ENSG00000243927.6	ENST00000488492.5:ENST00000477091.5:ENST00000399312.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	28	2	4.273	4.322845	4.37269	0.0368357	0.0154102	0.138959	0.108569
chr4	150728664	150728764	2268862	0	-	0.33	(0.32,0.35]	chr4	220726	446	INTRON	INTRON	LRBA	ENSG00000198589.14	ENST00000357115.9:ENST00000651943.2:ENST00000510413.5:ENST00000509835.5:ENST00000651695.1:ENST00000651035.1:ENST00000507224.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	28	2	4.273	4.322845	4.37269	0.0368357	0.0154102	0.138959	0.108569
chr5	83071430	83071530	2666641	0	-	0.33	(0.32,0.35]	chr5	252497	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	TMEM167A	ENSG00000174695.10	ENST00000502346.2:ENST00000511450.5:ENST00000504622.5:ENST00000509770.1:ENST00000503892.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	28	2	4.273	4.322845	4.37269	0.0368357	0.0154102	0.138959	0.108569
chr5	132905800	132905900	2724684	0	-	0.33	(0.32,0.35]	chr5	256321	10	INTRON	INTRON	AFF4	ENSG00000072364.13	ENST00000265343.10:ENST00000378595.7:ENST00000425658.1:ENST00000378593.6:ENST00000477369.5:ENST00000491831.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	28	2	4.273	4.322845	4.37269	0.0368357	0.0154102	0.138959	0.108569
chr8	90559490	90559590	3795701	0	+	0.35	(0.32,0.35]	chr8	351838	201	INTRON	INTRON	LINC00534	ENSG00000253394.7	ENST00000655523.1:ENST00000658299.1:ENST00000662692.1:ENST00000667296.1:ENST00000653734.1:ENST00000654785.1:ENST00000524361.5	lncRNA	lncRNA	lncRNA	lncRNA	0	28	2	4.273	4.322845	4.37269	0.0368357	0.0154102	0.138959	0.108569
chr9	120419287	120419387	4332242	0	-	0.35	(0.32,0.35]	chr9	397981	1	SS5_PROX	SS5_PROX:INTRON	CDK5RAP2	ENSG00000136861.19	ENST00000349780.9:ENST00000360190.8:ENST00000687279.1:ENST00000687633.1:ENST00000684780.1:ENST00000687311.1:ENST00000479584.2:ENST00000690814.1:ENST00000686842.1:ENST00000691551.1:ENST00000693714.1:ENST00000693386.1:ENST00000692746.1:ENST00000686376.1:ENST00000692155.1:ENST00000690646.1:ENST00000693433.1:ENST00000688923.1:ENST00000473282.6:ENST00000480112.5:ENST00000685866.1:ENST00000689688.1:ENST00000416449.6:ENST00000691504.1:ENST00000425647.1:ENST00000360822.8:ENST00000693728.1:ENST00000483412.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	28	2	4.273	4.322845	4.37269	0.0368357	0.0154102	0.138959	0.108569
chrX	98682783	98682883	7691794	0	+	0.35	(0.32,0.35]	chrX	787203	377	INTRON	INTRON	ENSG00000281566	ENSG00000281566.3	ENST00000649508.1:ENST00000626665.3:ENST00000627700.2	lncRNA	lncRNA	lncRNA	lncRNA	0	28	2	4.273	4.322845	4.37269	0.0368357	0.0154102	0.138959	0.108569
chr1	193058391	193058488	612863	0	-	0.319588	(0.28,0.32]	chr1	72488	11	INTRON	INTRON	UCHL5	ENSG00000116750.14	ENST00000367455.8:ENST00000367454.6:ENST00000367450.7:ENST00000367451.8:ENST00000367449.5:ENST00000367448.5:ENST00000421683.1:ENST00000483156.1:ENST00000417752.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	64	2	3.1268	4.32274	5.51868	0.00508956	0.00162747	0.0646039	0.0367966
chr6	157316881	157316980	3252006	0	-	0.30303	(0.28,0.32]	chr6	302151	235	INTRON	INTRON	TMEM242	ENSG00000215712.11	ENST00000400788.9	protein_coding	protein_coding	protein_coding	protein_coding	1	64	2	3.1268	4.32274	5.51868	0.00508956	0.00162747	0.0646039	0.0367966
chr13	32521906	32521998	5572681	0	-	0.5	(0.476,0.515]	chr13	532561	6	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	N4BP2L2	ENSG00000244754.9	ENST00000357505.10:ENST00000399396.7:ENST00000504114.5:ENST00000509076.1:ENST00000446957.6:ENST00000674456.1:ENST00000674161.1:ENST00000674422.1:ENST00000674272.1:ENST00000674452.1:ENST00000674384.1:ENST00000505213.5:ENST00000674219.1:ENST00000267068.5:ENST00000674349.1:ENST00000674428.1:ENST00000503814.2:ENST00000674465.1:ENST00000674421.1:ENST00000674180.1:ENST00000674297.1:ENST00000674293.1:ENST00000674480.1:ENST00000674377.1:ENST00000674437.1:ENST00000674327.1:ENST00000674399.1:ENST00000674196.1:ENST00000674163.1:ENST00000511143.5:ENST00000674484.1:ENST00000475731.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	56	2	3.19119	4.322545	5.4539	0.00325748	5.16081e-4	0.0524329	0.0208667
chr5	139281344	139281443	2499250	0	+	0.434343	(0.408,0.44]	chr5	238886	5	INTRON	INTRON	MATR3:SNHG4	ENSG00000280987.4:ENSG00000281398.4	ENST00000509990.5:ENST00000506147.5:ENST00000512107.5:ENST00000361059.7:ENST00000506188.5:ENST00000394800.6:ENST00000502929.5:ENST00000504203.5:ENST00000514694.5:ENST00000507197.5:ENST00000509644.5:ENST00000505016.2:ENST00000505522.6:ENST00000502394.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	2	127	2	4.09715	4.322355	4.54756	4.3007e-5	6.64901e-6	0.00530629	0.00194394
chr17	30123065	30123165	6587451	0	+	0.44	(0.408,0.44]	chr17	640557	45	INTRON	INTRON	NSRP1	ENSG00000126653.18	ENST00000540900.7:ENST00000584423.5:ENST00000612959.4:ENST00000247026.10:ENST00000577289.6:ENST00000584154.5:ENST00000394826.8:ENST00000479218.6:ENST00000475652.5:ENST00000584317.5:ENST00000583301.5:ENST00000585881.5:ENST00000467446.6:ENST00000580103.6:ENST00000581048.5:ENST00000588614.1:ENST00000589608.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	56	2	3.50731	4.322165	5.13702	0.00202889	8.5918e-4	0.04086	0.0265787
chr8	27337776	27337876	3719907	0	+	0.32	(0.28,0.32]	chr8	345640	105	INTRON	INTRON	PTK2B	ENSG00000120899.18	ENST00000397501.5:ENST00000522338.5:ENST00000521164.5:ENST00000346049.10:ENST00000420218.3:ENST00000522517.5	protein_coding	protein_coding	protein_coding	protein_coding	1	67	2	2.80157	4.321975	5.84238	0.0147132	5.0114e-4	0.106558	0.0206993
chr1	176204383	176204481	591690	0	-	0.418367	(0.408,0.44]	chr1	70991	27	INTRON	INTRON	COP1	ENSG00000143207.21	ENST00000367669.8:ENST00000367667.5:ENST00000649803.1:ENST00000308769.12:ENST00000498306.5:ENST00000491600.5:ENST00000474194.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	56	2	3.20437	4.321885	5.4394	0.00306596	6.50925e-4	0.0509893	0.0232863
chr5	140199449	140199548	2501993	0	+	0.424242	(0.408,0.44]	chr5	239136	44	INTRON	INTRON	CYSTM1	ENSG00000120306.11	ENST00000509589.5:ENST00000509789.2:ENST00000504227.5:ENST00000261811.6:ENST00000644078.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	56	2	3.20437	4.321885	5.4394	0.00306596	6.50925e-4	0.0509893	0.0232863
chr9	125142347	125142442	4351969	0	-	0.294737	(0.28,0.32]	chr9	399532	2	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	SCAI	ENSG00000173611.18	ENST00000336505.11:ENST00000373549.8:ENST00000477186.5:ENST00000468569.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	70	2	3.19774	4.321785	5.44583	0.00548491	5.8721e-4	0.0648867	0.0220073
chr3	140949027	140949127	1523020	0	+	0.36	(0.35,0.378]	chr3	158650	59	INTRON	INTRON	SLC25A36	ENSG00000114120.14	ENST00000446041.6:ENST00000324194.12:ENST00000648615.1:ENST00000502756.1:ENST00000393015.8:ENST00000515813.1:ENST00000507429.5:ENST00000502594.5:ENST00000453248.6:ENST00000631654.1:ENST00000513887.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	59	2	3.10863	4.321669999999999	5.53471	0.00470896	6.96925e-4	0.0631419	0.024224
chr5	69908475	69908575	2382087	0	+	0.37	(0.35,0.378]	chr5	229544	328	INTRON	INTRON	GUSBP13	ENSG00000198237.8	ENST00000506490.2	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	4	108	2	2.64997	4.321585	5.9932	5.26167e-4	1.00366e-4	0.0206193	0.00904854
chr7	76471490	76471585	3339989	0	+	0.484211	(0.476,0.515]	chr7	311076	7	INTRON	INTRON	DTX2	ENSG00000091073.20	ENST00000425780.5:ENST00000451769.5:ENST00000456590.5:ENST00000324432.9:ENST00000430490.7:ENST00000446600.5:ENST00000457529.5:ENST00000492339.5:ENST00000413936.6:ENST00000423646.5:ENST00000438930.5:ENST00000442516.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	59	2	3.24596	4.321525	5.39709	0.00322919	2.55871e-4	0.0507087	0.0142249
chr17	19062195	19062290	6570501	0	+	0.505263	(0.476,0.515]	chr17	638906	4	EXON_SMALL	EXON_SMALL	SNORD3B-1	ENSG00000265185.6	ENST00000577988.2	snoRNA	snoRNA	snoRNA	snoRNA	6	322	2	4.2592	4.321295	4.38339	8.08784e-6	7.99834e-9	0.00204092	2.39904e-5
chr2	151449532	151449630	893621	0	+	0.540816	(0.515,0.57]	chr2	98976	26	INTRON	INTRON	RIF1	ENSG00000080345.18	ENST00000453091.6:ENST00000428287.6:ENST00000444746.7:ENST00000243326.9:ENST00000414861.6:ENST00000430328.6	protein_coding	protein_coding	protein_coding	protein_coding	2	68	2	2.82994	4.321065	5.81219	0.00168661	4.05175e-5	0.0381778	0.00539487
chr16	81693687	81693787	6407511	0	+	0.64	(0.57,1]	chr16	615113	2	SS5_PROX	SS5_PROX:INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5:ENST00000398040.8:ENST00000565680.1:ENST00000569146.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	40	2	3.8646	4.32095	4.7773	5.07088e-4	8.0672e-5	0.0202328	0.00804467
chr6	82214656	82214742	3143439	0	-	0.337209	(0.32,0.35]	chr6	293087	6	CDS	CDS:UTR3:EXON_MRNA:INTRON	IBTK	ENSG00000005700.15	ENST00000505222.5:ENST00000306270.12:ENST00000610980.4:ENST00000503400.5:ENST00000503631.5:ENST00000510291.5:ENST00000369751.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	61	2	3.45772	4.320935	5.18415	0.00333629	0.00128487	0.0512081	0.0333518
chr1	211272850	211272946	305834	0	+	0.614583	(0.57,1]	chr1	35253	6	INTRON	INTRON	RCOR3	ENSG00000117625.14	ENST00000534478.5:ENST00000533469.5:ENST00000367006.8:ENST00000419091.7:ENST00000452621.6:ENST00000528926.5:ENST00000529572.5:ENST00000367005.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	49	2	3.01672	4.320815	5.62491	5.94133e-4	6.73465e-6	0.0221865	0.00194394
chr20	47256111	47256211	7348494	0	-	0.46	(0.44,0.476]	chr20	749282	63	INTRON	INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000467200.6:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000468376.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	57	2	3.02366	4.32058	5.6175	0.00603307	2.84938e-4	0.0700813	0.015495
chr6	53075693	53075790	2877657	0	+	0.268041	[0,0.28]	chr6	273130	17	INTRON	INTRON	FBXO9	ENSG00000112146.17	ENST00000498744.5:ENST00000370939.7:ENST00000323557.12:ENST00000473337.6:ENST00000244426.10:ENST00000480463.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	70	2	2.90797	4.320365	5.73276	0.0118539	0.00156565	0.0962115	0.0360583
chr19	38677725	38677825	7066029	0	+	0.51	(0.476,0.515]	chr19	705486	291	INTRON	INTRON	ACTN4	ENSG00000130402.13	ENST00000252699.7:ENST00000588618.5:ENST00000440400.2:ENST00000424234.7:ENST00000589528.1:ENST00000390009.7:ENST00000495553.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	89	2	2.65911	4.320195	5.98128	0.00116074	4.70386e-5	0.0314098	0.00593131
chr12	103946119	103946219	5208504	0	+	0.31	(0.28,0.32]	chr12	492965	20	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	HSP90B1	ENSG00000166598.16	ENST00000550595.2:ENST00000681861.1:ENST00000680899.1:ENST00000680391.1:ENST00000680653.1:ENST00000679779.1:ENST00000680281.1:ENST00000681949.1:ENST00000680989.1:ENST00000614327.2:ENST00000680762.1:ENST00000680663.1:ENST00000681172.1:ENST00000681941.1:ENST00000681910.1:ENST00000681704.1:ENST00000299767.10:ENST00000681174.1:ENST00000680370.1:ENST00000679538.1:ENST00000681698.1:ENST00000548462.5:ENST00000680316.1:ENST00000679861.1:ENST00000681245.1:ENST00000680478.1:ENST00000552051.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	105	2	2.86389	4.320175	5.77646	6.44045e-4	5.73871e-4	0.0231685	0.0217493
chr14	52732212	52732311	5716947	0	+	0.525253	(0.515,0.57]	chr14	543033	1	INTRON	INTRON	STYX	ENSG00000198252.12	ENST00000354586.5:ENST00000442123.6:ENST00000556861.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	26	2	4.04086	4.32	4.59914	0.0197045	0.00616166	0.120063	0.0676501
chr14	73196934	73197034	5785383	0	+	0.54	(0.515,0.57]	chr14	547993	37	INTRON	INTRON	PSEN1	ENSG00000080815.19	ENST00000357710.8:ENST00000324501.10:ENST00000394164.5:ENST00000555386.5:ENST00000557511.5:ENST00000553855.5:ENST00000406768.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	26	2	4.04086	4.32	4.59914	0.0197045	0.00616166	0.120063	0.0676501
chr20	32378244	32378344	7256025	0	+	0.54	(0.515,0.57]	chr20	737076	58	INTRON	INTRON	ASXL1	ENSG00000171456.21	ENST00000651418.1:ENST00000375687.10:ENST00000613218.4:ENST00000644587.1:ENST00000620121.4:ENST00000646985.1:ENST00000643168.1:ENST00000306058.9:ENST00000645688.1:ENST00000470145.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	26	2	4.04086	4.32	4.59914	0.0197045	0.00616166	0.120063	0.0676501
chr22	17618933	17619033	7547723	0	-	0.55	(0.515,0.57]	chr22	771452	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ATP6V1E1	ENSG00000131100.13	ENST00000253413.10:ENST00000399796.6:ENST00000399798.6:ENST00000413576.1:ENST00000481365.5:ENST00000484653.5:ENST00000478963.5:ENST00000460085.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	26	2	4.04086	4.32	4.59914	0.0197045	0.00616166	0.120063	0.0676501
chr22	19082884	19082983	7551618	0	-	0.545455	(0.515,0.57]	chr22	771897	143	INTRON	INTRON	DGCR2	ENSG00000070413.20	ENST00000537045.5:ENST00000545799.5:ENST00000263196.12:ENST00000389262.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	26	2	4.04086	4.32	4.59914	0.0197045	0.00616166	0.120063	0.0676501
chr5	37380339	37380434	2340397	0	+	0.557895	(0.515,0.57]	chr5	226209	4	INTRON	INTRON	WDR70	ENSG00000082068.9	ENST00000504564.1:ENST00000511906.5:ENST00000505799.1:ENST00000265107.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	26	2	4.04086	4.32	4.59914	0.0197045	0.00616166	0.120063	0.0676501
chr6	4039983	4040079	2789886	0	+	0.520833	(0.515,0.57]	chr6	263493	21	INTRON	INTRON	PRPF4B	ENSG00000112739.17	ENST00000480058.5:ENST00000337659.11:ENST00000481109.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	26	2	4.04086	4.32	4.59914	0.0197045	0.00616166	0.120063	0.0676501
chr6	34899791	34899891	2849377	0	+	0.55	(0.515,0.57]	chr6	269222	98	INTRON	INTRON	ANKS1A	ENSG00000064999.15	ENST00000360359.5:ENST00000649117.1:ENST00000650178.1	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.04086	4.32	4.59914	0.0197045	0.00616166	0.120063	0.0676501
chr9	93484711	93484811	4158377	0	+	0.55	(0.515,0.57]	chr9	379139	80	INTRON	INTRON	FAM120A	ENSG00000048828.17	ENST00000277165.11:ENST00000375389.7:ENST00000446420.2	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.04086	4.32	4.59914	0.0197045	0.00616166	0.120063	0.0676501
chr1	36282900	36283000	73519	0	+	0.37	(0.35,0.378]	chr1	9384	2	SS5_PROX	SS5_PROX:INTRON	THRAP3	ENSG00000054118.15	ENST00000469141.6:ENST00000648638.1:ENST00000354618.10	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	3.97032	4.319805000000001	4.66929	0.0578667	0.00541617	0.167723	0.066545000000000007
chr1	224363608	224363708	321849	0	+	0.36	(0.35,0.378]	chr1	37064	1	SS3_PROX	SS3_PROX:INTRON	CNIH4	ENSG00000143771.12	ENST00000366858.7:ENST00000366857.9:ENST00000465271.6:ENST00000366860.9:ENST00000468318.5:ENST00000366856.3:ENST00000477413.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	28	2	3.97032	4.319805000000001	4.66929	0.0578667	0.00541617	0.167723	0.066545000000000007
chr12	110444882	110444976	5409622	0	-	0.351064	(0.35,0.378]	chr12	516496	1	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	ENSG00000258210:ARPC3	ENSG00000258210.1:ENSG00000111229.16	ENST00000550231.1:ENST00000228825.12:ENST00000426440.5:ENST00000547365.1:ENST00000548878.6:ENST00000471641.1:ENST00000475777.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:processed_transcript	0	28	2	3.97032	4.319805000000001	4.66929	0.0578667	0.00541617	0.167723	0.066545000000000007
chr17	36578955	36579051	6602202	0	+	0.375	(0.35,0.378]	chr17	642574	9	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	GGNBP2	ENSG00000278311.5	ENST00000613102.5:ENST00000617860.4:ENST00000618837.4:ENST00000619573.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	28	2	3.97032	4.319805000000001	4.66929	0.0578667	0.00541617	0.167723	0.066545000000000007
chr19	57911275	57911370	7216917	0	-	0.368421	(0.35,0.378]	chr19	733166	8	INTRON	INTRON	ZNF417	ENSG00000173480.11	ENST00000594396.1:ENST00000312026.6:ENST00000595559.1:ENST00000597515.5:ENST00000598526.5:ENST00000598629.5:ENST00000599251.1	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	3.97032	4.319805000000001	4.66929	0.0578667	0.00541617	0.167723	0.066545000000000007
chr2	121481310	121481410	1220696	0	-	0.36	(0.35,0.378]	chr2	129995	110	INTRON	INTRON	CLASP1	ENSG00000074054.20	ENST00000263710.8:ENST00000397587.7:ENST00000541377.5:ENST00000409078.8:ENST00000455322.6:ENST00000452274.6:ENST00000430234.5:ENST00000418989.5:ENST00000449975.1:ENST00000474065.5:ENST00000480007.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	28	2	3.97032	4.319805000000001	4.66929	0.0578667	0.00541617	0.167723	0.066545000000000007
chr20	47651576	47651676	7282517	0	+	0.36	(0.35,0.378]	chr20	740577	3	SS5_PROX	SS5_PROX:INTRON	NCOA3	ENSG00000124151.19	ENST00000371998.8:ENST00000372004.7:ENST00000371997.3	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	3.97032	4.319805000000001	4.66929	0.0578667	0.00541617	0.167723	0.066545000000000007
chr6	12030463	12030562	2814408	0	+	0.363636	(0.35,0.378]	chr6	264794	97	INTRON	INTRON	HIVEP1	ENSG00000095951.17	ENST00000491710.5:ENST00000487103.5:ENST00000379388.7:ENST00000627968.2:ENST00000541134.5:ENST00000442081.6:ENST00000478545.1:ENST00000484210.1	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	3.97032	4.319805000000001	4.66929	0.0578667	0.00541617	0.167723	0.066545000000000007
chr1	229627032	229627120	333640	0	+	0.295455	(0.28,0.32]	chr1	38860	3	INTRON	INTRON	URB2	ENSG00000135763.10	ENST00000258243.7	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	4.03345	4.319775	4.6061	0.0704058	0.0102724	0.184298	0.089002
chr13	32703835	32703935	5466502	0	+	0.29	(0.28,0.32]	chr13	523810	20	INTRON	INTRON	PDS5B	ENSG00000083642.19	ENST00000315596.15:ENST00000450460.5:ENST00000481616.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	29	2	4.03345	4.319775	4.6061	0.0704058	0.0102724	0.184298	0.089002
chr15	79913595	79913693	6241077	0	-	0.316327	(0.28,0.32]	chr15	595783	56	INTRON	INTRON	ST20-MTHFS:ST20	ENSG00000259332.3:ENSG00000180953.11	ENST00000615374.5:ENST00000479961.1:ENST00000494999.1:ENST00000478497.5:ENST00000485386.1	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	4.03345	4.319775	4.6061	0.0704058	0.0102724	0.184298	0.089002
chr2	46626408	46626507	770579	0	+	0.313131	(0.28,0.32]	chr2	86971	23	UTR3	UTR3:EXON_MRNA	CRIPT	ENSG00000119878.6	ENST00000238892.4	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	4.03345	4.319775	4.6061	0.0704058	0.0102724	0.184298	0.089002
chr2	112523755	112523853	851404	0	+	0.285714	(0.28,0.32]	chr2	95411	8	INTRON	INTRON	TTL	ENSG00000114999.8	ENST00000233336.7:ENST00000460450.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	29	2	4.03345	4.319775	4.6061	0.0704058	0.0102724	0.184298	0.089002
chr4	17918331	17918431	2117256	0	-	0.32	(0.28,0.32]	chr4	209129	86	INTRON	INTRON	LCORL	ENSG00000178177.17	ENST00000635767.2:ENST00000326877.8:ENST00000675131.1:ENST00000675143.1:ENST00000637787.1:ENST00000675605.1:ENST00000510451.5:ENST00000510121.5:ENST00000675927.1:ENST00000382224.5:ENST00000382226.5:ENST00000676061.1:ENST00000674942.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	29	2	4.03345	4.319775	4.6061	0.0704058	0.0102724	0.184298	0.089002
chr4	150956545	150956645	2271184	0	-	0.31	(0.28,0.32]	chr4	220921	271	INTRON	INTRON	LRBA	ENSG00000198589.14	ENST00000357115.9:ENST00000651943.2:ENST00000510413.5:ENST00000651035.1:ENST00000507224.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	29	2	4.03345	4.319775	4.6061	0.0704058	0.0102724	0.184298	0.089002
chr5	176486689	176486789	2552557	0	+	0.32	(0.28,0.32]	chr5	243681	2	SS5_PROX	SS5_PROX:INTRON	FAF2	ENSG00000113194.13	ENST00000261942.7:ENST00000510446.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	29	2	4.03345	4.319775	4.6061	0.0704058	0.0102724	0.184298	0.089002
chr6	12054725	12054825	2814653	0	+	0.3	(0.28,0.32]	chr6	264800	156	INTRON	INTRON	HIVEP1	ENSG00000095951.17	ENST00000491710.5:ENST00000487103.5:ENST00000379388.7:ENST00000627968.2:ENST00000541134.5:ENST00000442081.6:ENST00000478545.1	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	4.03345	4.319775	4.6061	0.0704058	0.0102724	0.184298	0.089002
chr7	36433135	36433234	3307457	0	+	0.313131	(0.28,0.32]	chr7	307191	44	INTRON	INTRON	ANLN	ENSG00000011426.11	ENST00000396068.6:ENST00000265748.7:ENST00000428612.5:ENST00000457743.1	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	4.03345	4.319775	4.6061	0.0704058	0.0102724	0.184298	0.089002
chr1	87005213	87005313	154501	0	+	0.35	(0.32,0.35]	chr1	16969	298	INTRON	INTRON	HS2ST1	ENSG00000153936.18	ENST00000370550.10:ENST00000370551.8:ENST00000687893.1:ENST00000693745.1:ENST00000689904.1:ENST00000690674.1:ENST00000591456.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	28	2	4.17181	4.319694999999999	4.46758	0.04531	0.0119306	0.149888	0.0962115
chr1	113085226	113085326	188214	0	+	0.33	(0.32,0.35]	chr1	20854	112	INTRON	INTRON	LRIG2	ENSG00000198799.12	ENST00000361127.6	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.17181	4.319694999999999	4.46758	0.04531	0.0119306	0.149888	0.0962115
chr10	92624150	92624249	4490997	0	+	0.323232	(0.32,0.35]	chr10	413586	23	INTRON	INTRON	KIF11	ENSG00000138160.7	ENST00000676757.1:ENST00000676647.1:ENST00000260731.5:ENST00000676621.1:ENST00000677720.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	28	2	4.17181	4.319694999999999	4.46758	0.04531	0.0119306	0.149888	0.0962115
chr13	113259110	113259209	5548804	0	+	0.323232	(0.32,0.35]	chr13	530211	36	INTRON	INTRON	CUL4A	ENSG00000139842.15	ENST00000375441.7:ENST00000326335.8:ENST00000451881.5:ENST00000617546.4:ENST00000375440.9:ENST00000472083.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	28	2	4.17181	4.319694999999999	4.46758	0.04531	0.0119306	0.149888	0.0962115
chr14	37051989	37052089	5876807	0	-	0.34	(0.32,0.35]	chr14	558013	1766	INTRON	INTRON	SLC25A21	ENSG00000183032.12	ENST00000331299.6:ENST00000555449.5:ENST00000557611.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	28	2	4.17181	4.319694999999999	4.46758	0.04531	0.0119306	0.149888	0.0962115
chr14	37199475	37199574	5695979	0	+	0.323232	(0.32,0.35]	chr14	541575	8	INTRON	INTRON	MIPOL1	ENSG00000151338.20	ENST00000694961.1:ENST00000396294.6:ENST00000537471.6:ENST00000556615.5:ENST00000554114.2:ENST00000695502.1:ENST00000695405.1:ENST00000695503.1:ENST00000684589.1:ENST00000327441.11:ENST00000694962.1:ENST00000539062.6:ENST00000554930.5:ENST00000556451.5:ENST00000694963.1:ENST00000555870.5:ENST00000694964.1:ENST00000556753.5:ENST00000694965.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	28	2	4.17181	4.319694999999999	4.46758	0.04531	0.0119306	0.149888	0.0962115
chr2	23954609	23954708	707221	0	+	0.323232	(0.32,0.35]	chr2	81932	136	INTRON	INTRON	UBXN2A	ENSG00000173960.14	ENST00000446425.2:ENST00000404924.5:ENST00000309033.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	28	2	4.17181	4.319694999999999	4.46758	0.04531	0.0119306	0.149888	0.0962115
chr9	4816764	4816863	4095104	0	+	0.343434	(0.32,0.35]	chr9	373155	232	INTRON	INTRON	RCL1	ENSG00000120158.12	ENST00000381750.9:ENST00000381732.3:ENST00000442869.5:ENST00000473230.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	28	2	4.17181	4.319694999999999	4.46758	0.04531	0.0119306	0.149888	0.0962115
chr1	219923328	219923428	638008	0	-	0.39	(0.378,0.408]	chr1	75134	44	INTRON	INTRON	SLC30A10	ENSG00000196660.12	ENST00000484239.5:ENST00000696608.1:ENST00000366926.4:ENST00000356609.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	59	2	3.76175	4.319685	4.87762	0.00553849	2.68579e-4	0.0648867	0.0145349
chr11	76911393	76911492	4837278	0	+	0.40404	(0.378,0.408]	chr11	451195	428	INTRON	INTRON	ACER3	ENSG00000078124.13	ENST00000679754.1:ENST00000534206.5:ENST00000679866.1:ENST00000680842.1:ENST00000681257.1:ENST00000681354.1:ENST00000681732.1:ENST00000680583.1:ENST00000532485.6:ENST00000681375.1:ENST00000681004.1:ENST00000525194.5:ENST00000525861.5:ENST00000530182.6:ENST00000531461.5:ENST00000681955.1:ENST00000681411.1:ENST00000679611.1:ENST00000679924.1:ENST00000526597.5:ENST00000681251.1:ENST00000530334.6:ENST00000533873.1:ENST00000531352.5:ENST00000278544.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	27	2	4.21563	4.31956	4.42349	0.0315429	0.00992961	0.13151	0.0877296
chr12	110542813	110542912	5410086	0	-	0.383838	(0.378,0.408]	chr12	516620	25	INTRON	INTRON	PPTC7	ENSG00000196850.6	ENST00000354300.5:ENST00000548721.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	27	2	4.21563	4.31956	4.42349	0.0315429	0.00992961	0.13151	0.0877296
chr13	32618872	32618972	5465632	0	+	0.39	(0.378,0.408]	chr13	523717	319	INTRON	INTRON	PDS5B	ENSG00000083642.19	ENST00000315596.15:ENST00000482955.5:ENST00000498550.5:ENST00000450460.5:ENST00000493653.1:ENST00000466078.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	27	2	4.21563	4.31956	4.42349	0.0315429	0.00992961	0.13151	0.0877296
chr16	4756914	4757013	6438363	0	-	0.40404	(0.378,0.408]	chr16	620047	35	INTRON	INTRON	ZNF500	ENSG00000103199.14	ENST00000219478.11:ENST00000545009.1:ENST00000589422.1:ENST00000592425.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	27	2	4.21563	4.31956	4.42349	0.0315429	0.00992961	0.13151	0.0877296
chr19	16566857	16566957	7149873	0	-	0.39	(0.378,0.408]	chr19	722380	2	SS3_PROX	SS3_PROX:INTRON	SLC35E1	ENSG00000127526.15	ENST00000595753.6:ENST00000409648.8:ENST00000436553.6:ENST00000488894.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	27	2	4.21563	4.31956	4.42349	0.0315429	0.00992961	0.13151	0.0877296
chr19	21167866	21167966	7040218	0	+	0.38	(0.378,0.408]	chr19	701942	2	SS5_PROX	SS5_PROX:INTRON	ZNF431	ENSG00000196705.8	ENST00000600692.5:ENST00000599296.5:ENST00000594425.5:ENST00000311048.11:ENST00000598331.1	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.21563	4.31956	4.42349	0.0315429	0.00992961	0.13151	0.0877296
chr2	10445364	10445464	1065072	0	-	0.4	(0.378,0.408]	chr2	113663	1	SS3_PROX	SS3_PROX:INTRON	ODC1	ENSG00000115758.13	ENST00000234111.9:ENST00000405333.5:ENST00000446285.5:ENST00000443218.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	27	2	4.21563	4.31956	4.42349	0.0315429	0.00992961	0.13151	0.0877296
chr2	75910479	75910579	817264	0	+	0.38	(0.378,0.408]	chr2	91391	376	INTRON	INTRON	ENSG00000287474	ENSG00000287474.1	ENST00000670606.1	lncRNA	lncRNA	lncRNA	lncRNA	0	27	2	4.21563	4.31956	4.42349	0.0315429	0.00992961	0.13151	0.0877296
chr2	134172353	134172452	869388	0	+	0.393939	(0.378,0.408]	chr2	97549	517	INTRON	INTRON	MGAT5	ENSG00000152127.9	ENST00000468758.1:ENST00000481801.5:ENST00000409645.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	27	2	4.21563	4.31956	4.42349	0.0315429	0.00992961	0.13151	0.0877296
chr20	59031719	59031819	7359607	0	-	0.39	(0.378,0.408]	chr20	750561	1	SS5_PROX	SS5_PROX:INTRON	ATP5F1E	ENSG00000124172.10	ENST00000243997.8:ENST00000395663.1:ENST00000395659.1	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.21563	4.31956	4.42349	0.0315429	0.00992961	0.13151	0.0877296
chr3	129091846	129091922	1814444	0	-	0.407895	(0.378,0.408]	chr3	182365	1	INTRON	INTRON	RAB43:ISY1-RAB43	ENSG00000172780.17:ENSG00000261796.1	ENST00000393305.5:ENST00000393307.5:ENST00000393308.5:ENST00000393304.5:ENST00000315150.10:ENST00000418265.1:ENST00000476465.5	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.21563	4.31956	4.42349	0.0315429	0.00992961	0.13151	0.0877296
chr9	137384669	137384768	4376839	0	-	0.393939	(0.378,0.408]	chr9	403535	9	INTRON	INTRON	EXD3	ENSG00000187609.16	ENST00000340951.9:ENST00000490886.5:ENST00000460390.6:ENST00000479452.5:ENST00000475006.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	27	2	4.21563	4.31956	4.42349	0.0315429	0.00992961	0.13151	0.0877296
chr14	93278353	93278453	5963386	0	-	0.4	(0.378,0.408]	chr14	566271	140	INTRON	INTRON	BTBD7	ENSG00000011114.15	ENST00000334746.10:ENST00000355125.3:ENST00000554565.5:ENST00000553975.1:ENST00000554644.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	27	2	4.31699	4.3193649999999995	4.32174	0.0250408	0.0132362	0.12011	0.0999551
chr17	58346904	58346995	6800273	0	-	0.406593	(0.378,0.408]	chr17	671530	2	SS5_PROX	SS5_PROX:INTRON	SUPT4H1	ENSG00000213246.7	ENST00000581166.5:ENST00000225504.8:ENST00000577396.5:ENST00000581204.1:ENST00000581540.5:ENST00000580947.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	27	2	4.31699	4.3193649999999995	4.32174	0.0250408	0.0132362	0.12011	0.0999551
chr2	226836699	226836786	1023667	0	+	0.402299	(0.378,0.408]	chr2	109418	1	INTRON	INTRON	RHBDD1	ENSG00000144468.17	ENST00000424132.1:ENST00000341329.7:ENST00000437454.5:ENST00000443477.5:ENST00000423616.1:ENST00000392062.7:ENST00000448992.5:ENST00000539613.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	27	2	4.31699	4.3193649999999995	4.32174	0.0250408	0.0132362	0.12011	0.0999551
chr7	92041094	92041192	3352040	0	+	0.408163	(0.378,0.408]	chr7	312296	3	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	AKAP9	ENSG00000127914.19	ENST00000680534.1:ENST00000680513.1:ENST00000680072.1:ENST00000679821.1:ENST00000679554.1:ENST00000356239.8:ENST00000679521.1:ENST00000680181.1:ENST00000681722.1:ENST00000680766.1:ENST00000679448.1:ENST00000681412.1:ENST00000680047.1:ENST00000679474.1:ENST00000680952.1:ENST00000679457.1:ENST00000679722.1:ENST00000680074.1:ENST00000493453.1:ENST00000674381.2:ENST00000359028.7:ENST00000484815.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	27	2	4.31699	4.3193649999999995	4.32174	0.0250408	0.0132362	0.12011	0.0999551
chr9	130038351	130038451	4361903	0	-	0.4	(0.378,0.408]	chr9	401052	430	INTRON	INTRON	FNBP1	ENSG00000187239.17	ENST00000443566.6:ENST00000420781.5:ENST00000446176.7:ENST00000355681.3	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.31699	4.3193649999999995	4.32174	0.0250408	0.0132362	0.12011	0.0999551
chr1	15939707	15939801	35601	0	+	0.329787	(0.32,0.35]	chr1	4337	4	UTR3	UTR3:EXON_MRNA	SPEN	ENSG00000065526.12	ENST00000375759.8	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.27113	4.31934	4.36755	0.0300552	0.0199982	0.129138	0.120668
chr1	19460117	19460217	388655	0	-	0.35	(0.32,0.35]	chr1	46394	104	INTRON	INTRON	CAPZB	ENSG00000077549.19	ENST00000264202.8:ENST00000264203.7:ENST00000375142.5:ENST00000482808.2:ENST00000674449.1:ENST00000674390.1:ENST00000375144.6:ENST00000674432.1:ENST00000433834.5:ENST00000459967.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	28	2	4.27113	4.31934	4.36755	0.0300552	0.0199982	0.129138	0.120668
chr10	21849254	21849354	4577129	0	-	0.35	(0.32,0.35]	chr10	421900	428	INTRON	INTRON	DNAJC1	ENSG00000136770.11	ENST00000376980.8:ENST00000483085.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	28	2	4.27113	4.31934	4.36755	0.0300552	0.0199982	0.129138	0.120668
chr12	28279590	28279690	5101171	0	+	0.35	(0.32,0.35]	chr12	481941	105	INTRON	INTRON	CCDC91	ENSG00000123106.11	ENST00000540794.5:ENST00000538586.5:ENST00000536154.5:ENST00000535520.5:ENST00000539107.5:ENST00000544649.5:ENST00000545336.5:ENST00000536442.6:ENST00000543534.5:ENST00000543809.5:ENST00000545737.5:ENST00000381259.5:ENST00000540401.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	28	2	4.27113	4.31934	4.36755	0.0300552	0.0199982	0.129138	0.120668
chr14	91309558	91309658	5954526	0	-	0.34	(0.32,0.35]	chr14	565303	3	SS5_PROX	SS5_PROX:INTRON	CCDC88C	ENSG00000015133.20	ENST00000389857.11	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.27113	4.31934	4.36755	0.0300552	0.0199982	0.129138	0.120668
chr15	57997725	57997825	6186853	0	-	0.34	(0.32,0.35]	chr15	589758	22	INTRON	INTRON	ALDH1A2	ENSG00000128918.15	ENST00000537372.5:ENST00000249750.9:ENST00000347587.7:ENST00000430119.6:ENST00000558231.5:ENST00000559517.5:ENST00000559266.5:ENST00000561070.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	28	2	4.27113	4.31934	4.36755	0.0300552	0.0199982	0.129138	0.120668
chr16	53217073	53217172	6352350	0	+	0.333333	(0.32,0.35]	chr16	609704	69	INTRON	INTRON	CHD9	ENSG00000177200.18	ENST00000447540.6:ENST00000566029.5:ENST00000615216.4:ENST00000565832.5:ENST00000564845.5:ENST00000398510.7:ENST00000564255.5:ENST00000565803.2:ENST00000565442.1:ENST00000562791.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	28	2	4.27113	4.31934	4.36755	0.0300552	0.0199982	0.129138	0.120668
chr17	4353273	4353372	6712232	0	-	0.343434	(0.32,0.35]	chr17	657734	76	INTRON	INTRON	UBE2G1	ENSG00000132388.13	ENST00000396981.7:ENST00000572484.5:ENST00000574633.5:ENST00000571980.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	28	2	4.27113	4.31934	4.36755	0.0300552	0.0199982	0.129138	0.120668
chr17	81626348	81626447	6849502	0	-	0.343434	(0.32,0.35]	chr17	678237	37	INTRON	INTRON	NPLOC4	ENSG00000182446.14	ENST00000331134.11:ENST00000374747.9:ENST00000574897.5:ENST00000625705.1:ENST00000570300.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	28	2	4.27113	4.31934	4.36755	0.0300552	0.0199982	0.129138	0.120668
chr2	55687444	55687544	1125706	0	-	0.35	(0.32,0.35]	chr2	120835	4	SS5_PROX	SS5_PROX:INTRON	PNPT1	ENSG00000138035.15	ENST00000447944.7:ENST00000415374.5:ENST00000260604.8:ENST00000429805.1:ENST00000625249.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	28	2	4.27113	4.31934	4.36755	0.0300552	0.0199982	0.129138	0.120668
chr4	48768280	48768380	2139504	0	-	0.33	(0.32,0.35]	chr4	211018	404	INTRON	INTRON	FRYL	ENSG00000075539.15	ENST00000358350.9:ENST00000503238.6:ENST00000507711.5:ENST00000502520.5:ENST00000505437.5:ENST00000514783.5:ENST00000509886.5:ENST00000515684.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	28	2	4.27113	4.31934	4.36755	0.0300552	0.0199982	0.129138	0.120668
chr8	73532603	73532703	3968755	0	-	0.34	(0.32,0.35]	chr8	364073	44	INTRON	INTRON	STAU2	ENSG00000040341.18	ENST00000524300.6:ENST00000522695.5:ENST00000523558.5:ENST00000521210.5:ENST00000523533.5	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.27113	4.31934	4.36755	0.0300552	0.0199982	0.129138	0.120668
chr9	111363487	111363587	4314032	0	-	0.34	(0.32,0.35]	chr9	396587	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ECPAS	ENSG00000136813.15	ENST00000684092.1:ENST00000338205.9:ENST00000259335.8:ENST00000374383.1	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.27113	4.31934	4.36755	0.0300552	0.0199982	0.129138	0.120668
chr11	108735018	108735117	4859346	0	+	0.292929	(0.28,0.32]	chr11	453510	3	INTRON	INTRON	DDX10	ENSG00000178105.12	ENST00000693015.1:ENST00000690021.1:ENST00000686283.1:ENST00000322536.8:ENST00000648124.1:ENST00000688583.1:ENST00000688536.1:ENST00000686617.1:ENST00000688976.1:ENST00000687072.1:ENST00000526794.1:ENST00000692839.1:ENST00000689812.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	29	2	4.12807	4.31894	4.50981	0.0338135	0.0275554	0.146709	0.123904
chr12	22521730	22521829	5285193	0	-	0.313131	(0.28,0.32]	chr12	503594	21	INTRON	INTRON	C2CD5	ENSG00000111731.13	ENST00000333957.8:ENST00000446597.6:ENST00000536386.5:ENST00000396028.6:ENST00000542676.5:ENST00000545552.5:ENST00000541310.5:ENST00000542683.1:ENST00000540703.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	29	2	4.12807	4.31894	4.50981	0.0338135	0.0275554	0.146709	0.123904
chr12	105141646	105141746	5215002	0	+	0.32	(0.28,0.32]	chr12	493482	4	SS5_PROX	SS5_PROX:INTRON	WASHC4	ENSG00000136051.15	ENST00000311317.8:ENST00000550053.5:ENST00000332180.10:ENST00000620430.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	29	2	4.12807	4.31894	4.50981	0.0338135	0.0275554	0.146709	0.123904
chr16	30306851	30306951	6473085	0	-	0.31	(0.28,0.32]	chr16	625713	5	INTRON	INTRON	SMG1P5	ENSG00000183604.15	ENST00000529428.5:ENST00000411546.4:ENST00000691460.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	29	2	4.12807	4.31894	4.50981	0.0338135	0.0275554	0.146709	0.123904
chr19	21833645	21833744	7159603	0	-	0.313131	(0.28,0.32]	chr19	723772	141	INTRON	INTRON	ZNF43	ENSG00000198521.12	ENST00000354959.9:ENST00000357491.10:ENST00000594012.5:ENST00000595461.5:ENST00000598381.5:ENST00000599906.5:ENST00000596899.1:ENST00000598288.5:ENST00000593551.1	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	4.12807	4.31894	4.50981	0.0338135	0.0275554	0.146709	0.123904
chr22	40791529	40791628	7590095	0	-	0.292929	(0.28,0.32]	chr22	777172	66	INTRON	INTRON	SLC25A17	ENSG00000100372.15	ENST00000544408.5:ENST00000435456.7:ENST00000491545.5:ENST00000263255.10:ENST00000447566.5:ENST00000420970.5:ENST00000430221.5:ENST00000427084.5:ENST00000458600.5:ENST00000443810.5:ENST00000412879.5:ENST00000426396.5:ENST00000434193.5:ENST00000449676.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	29	2	4.12807	4.31894	4.50981	0.0338135	0.0275554	0.146709	0.123904
chr5	131436581	131436681	2717146	0	-	0.31	(0.28,0.32]	chr5	255451	2	SS3_PROX	SS3_PROX:INTRON	RAPGEF6	ENSG00000158987.22	ENST00000509018.6:ENST00000671916.1:ENST00000512611.5:ENST00000507093.5:ENST00000296859.10:ENST00000627212.2:ENST00000512052.5:ENST00000308008.10:ENST00000515170.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	29	2	4.12807	4.31894	4.50981	0.0338135	0.0275554	0.146709	0.123904
chr6	13681603	13681702	3058923	0	-	0.313131	(0.28,0.32]	chr6	284542	224	INTRON	INTRON	RANBP9	ENSG00000010017.13	ENST00000011619.6	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	4.12807	4.31894	4.50981	0.0338135	0.0275554	0.146709	0.123904
chr6	53299102	53299202	3107690	0	-	0.32	(0.28,0.32]	chr6	291049	30	INTRON	INTRON	ELOVL5	ENSG00000012660.14	ENST00000370918.8:ENST00000542638.5:ENST00000304434.11:ENST00000485336.5:ENST00000465983.5:ENST00000486973.1:ENST00000370913.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	29	2	4.12807	4.31894	4.50981	0.0338135	0.0275554	0.146709	0.123904
chr9	148604	148698	4226982	0	-	0.287234	(0.28,0.32]	chr9	388556	7	EXON_MRNA	EXON_MRNA:INTRON	CBWD1	ENSG00000172785.19	ENST00000356521.9:ENST00000377400.8:ENST00000619157.4:ENST00000314367.14:ENST00000612045.4:ENST00000475411.5:ENST00000611457.4:ENST00000465014.6:ENST00000613508.4:ENST00000382447.8:ENST00000487575.6:ENST00000495302.5:ENST00000616944.4:ENST00000613355.4:ENST00000498044.6:ENST00000618361.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	29	2	4.12807	4.31894	4.50981	0.0338135	0.0275554	0.146709	0.123904
chr9	94349102	94349202	4162022	0	+	0.32	(0.28,0.32]	chr9	379476	97	INTRON	INTRON	ENSG00000232063	ENSG00000232063.2	ENST00000454869.2	lncRNA	lncRNA	lncRNA	lncRNA	0	29	2	4.12807	4.31894	4.50981	0.0338135	0.0275554	0.146709	0.123904
chrX	118421520	118421620	7707873	0	+	0.31	(0.28,0.32]	chrX	788600	102	INTRON	INTRON	WDR44	ENSG00000131725.14	ENST00000371822.9:ENST00000254029.8:ENST00000371825.7:ENST00000371848.3	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	4.12807	4.31894	4.50981	0.0338135	0.0275554	0.146709	0.123904
chrX	30219631	30219723	7634965	0	+	0.293478	(0.28,0.32]	chrX	781842	2	UTR3	UTR3:EXON_MRNA	MAGEB2	ENSG00000099399.6	ENST00000378988.5	protein_coding	protein_coding	protein_coding	protein_coding	1	66	2	2.86113	4.318795	5.77646	0.0122675	6.44045e-4	0.0969406	0.0231685
chr1	667227	667327	356620	0	-	0.37	(0.35,0.378]	chr1	41087	342	INTRON	INTRON	ENSG00000230021	ENSG00000230021.10	ENST00000419394.2:ENST00000634337.2:ENST00000635509.2:ENST00000648019.1:ENST00000440200.5	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	0	28	2	4.07186	4.3186800000000005	4.5655	0.0279478	0.0155464	0.137011	0.100909
chr10	87897001	87897101	4483267	0	+	0.36	(0.35,0.378]	chr10	412570	25	INTRON	INTRON	PTEN	ENSG00000171862.12	ENST00000688308.1:ENST00000693560.1:ENST00000371953.8:ENST00000688158.1:ENST00000686459.1:ENST00000688922.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	28	2	4.07186	4.3186800000000005	4.5655	0.0279478	0.0155464	0.137011	0.100909
chr12	46589706	46589806	5126600	0	+	0.36	(0.35,0.378]	chr12	483461	179	INTRON	INTRON	ENSG00000257261:ENSG00000272369	ENSG00000257261.7:ENSG00000272369.1	ENST00000667191.1:ENST00000663959.1:ENST00000666025.1:ENST00000611243.2:ENST00000607353.1	lncRNA	lncRNA	lncRNA	lncRNA	0	28	2	4.07186	4.3186800000000005	4.5655	0.0279478	0.0155464	0.137011	0.100909
chr12	105006960	105007059	5213953	0	+	0.373737	(0.35,0.378]	chr12	493361	111	UTR3	UTR3:EXON_MRNA:INTRON	NOPCHAP1	ENSG00000151131.11	ENST00000552951.7:ENST00000547750.2:ENST00000622317.5:ENST00000637147.1:ENST00000548583.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	28	2	4.07186	4.3186800000000005	4.5655	0.0279478	0.0155464	0.137011	0.100909
chr7	27804677	27804777	3294011	0	+	0.36	(0.35,0.378]	chr7	306028	11	INTRON	INTRON	TAX1BP1	ENSG00000106052.14	ENST00000543117.5:ENST00000433216.6:ENST00000265393.10:ENST00000409980.5:ENST00000416801.6:ENST00000396319.7:ENST00000457186.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	28	2	4.07186	4.3186800000000005	4.5655	0.0279478	0.0155464	0.137011	0.100909
chr7	152050707	152050807	3449761	0	+	0.46	(0.44,0.476]	chr7	322435	226	INTRON	INTRON	GALNT11	ENSG00000178234.13	ENST00000430044.7:ENST00000482812.1:ENST00000431668.1:ENST00000446096.5:ENST00000447778.5:ENST00000423337.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	56	2	3.55068	4.3186350000000004	5.08659	0.00226401	7.06861e-4	0.0425438	0.0241881
chr15	67095689	67095789	6052147	0	+	0.51	(0.476,0.515]	chr15	576260	173	INTRON	INTRON	SMAD3	ENSG00000166949.17	ENST00000559460.5:ENST00000327367.9:ENST00000679624.1:ENST00000559937.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	57	2	3.01197	4.318595	5.62522	0.00633162	2.4907e-4	0.0722266	0.0145812
chr4	122278579	122278678	2033864	0	+	0.454545	(0.44,0.476]	chr4	202056	25	EXON_MRNA	EXON_MRNA:INTRON	KIAA1109	ENSG00000138688.17	ENST00000679879.1:ENST00000264501.8:ENST00000684987.1:ENST00000693420.1:ENST00000693334.1:ENST00000690536.1:ENST00000388738.8:ENST00000419325.5:ENST00000686093.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	80	2	2.88062	4.318555	5.75649	0.001878	4.17314e-5	0.039073	0.00523306
chr4	55966580	55966679	1961914	0	+	0.494949	(0.476,0.515]	chr4	196756	1	INTRON	INTRON	CEP135	ENSG00000174799.11	ENST00000257287.5:ENST00000506202.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	59	2	3.05152	4.318485	5.58545	0.0064848	1.04881e-4	0.0699952	0.00863456
chr17	66353242	66353342	6662804	0	+	0.32	(0.28,0.32]	chr17	650324	133	INTRON	INTRON	PRKCA	ENSG00000154229.12	ENST00000413366.8:ENST00000578063.5:ENST00000284384.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	106	2	2.21798	4.31846	6.41894	0.00901091	4.40085e-5	0.0851009	0.00569607
chr16	67195080	67195147	6366771	0	+	0.402985	(0.378,0.408]	chr16	611580	1	SS5_PROX	SS5_PROX:INTRON	E2F4	ENSG00000205250.9	ENST00000379378.8:ENST00000567007.5:ENST00000568839.5:ENST00000569573.1:ENST00000565226.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	104	2	2.62441	4.3184450000000005	6.01248	5.61983e-4	6.62964e-5	0.0216479	0.00717086
chr5	33459969	33460067	2335329	0	+	0.316327	(0.28,0.32]	chr5	225472	1	SS5_PROX	SS5_PROX:INTRON	TARS1	ENSG00000113407.14	ENST00000502553.5:ENST00000508361.5:ENST00000265112.8:ENST00000455217.6:ENST00000507716.5:ENST00000509731.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	153	2	2.6418	4.3184450000000005	5.99509	2.74247e-4	2.1005e-4	0.0151711	0.0126685
chr8	101186272	101186372	4006081	0	-	0.44	(0.408,0.44]	chr8	366709	75	INTRON	INTRON	ZNF706	ENSG00000120963.12	ENST00000520984.5:ENST00000518071.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	61	2	2.84077	4.31831	5.79585	0.0132196	3.36399e-5	0.0940535	0.00463632
chr6	44252455	44252544	2872897	0	+	0.370787	(0.35,0.378]	chr6	272616	2	SS5_PROX	SS5_PROX:INTRON	HSP90AB1	ENSG00000096384.20	ENST00000620073.4:ENST00000353801.7:ENST00000371646.10:ENST00000371554.2	protein_coding	protein_coding	protein_coding	protein_coding	6	296	2	3.72429	4.31822	4.91215	8.45605e-7	3.18259e-7	5.65267e-4	2.83638e-4
chr4	1889282	1889381	1910749	0	+	0.515152	(0.476,0.515]	chr4	191711	12	INTRON	INTRON	NSD2	ENSG00000109685.19	ENST00000508803.6:ENST00000507820.5:ENST00000508355.5:ENST00000514045.5:ENST00000515806.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	89	2	2.59304	4.31804	6.04304	0.00158794	3.44951e-5	0.0367961	0.00495154
chr15	28596285	28596385	5987977	0	+	0.29	(0.28,0.32]	chr15	569248	22	INTRON	INTRON	HERC2P9	ENSG00000206149.11	ENST00000689985.1:ENST00000688694.1:ENST00000529537.2:ENST00000529624.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	1	64	2	3.07744	4.317945	5.55845	0.00604536	0.00141854	0.0700813	0.0340865
chr5	111108036	111108133	2451296	0	+	0.319588	(0.28,0.32]	chr5	234839	2	INTRON	INTRON	WDR36	ENSG00000134987.13	ENST00000505303.5:ENST00000513710.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	64	2	3.07744	4.317945	5.55845	0.00604536	0.00141854	0.0700813	0.0340865
chr19	38656950	38657050	7065821	0	+	0.43	(0.408,0.44]	chr19	705486	83	INTRON	INTRON	ACTN4	ENSG00000130402.13	ENST00000252699.7:ENST00000588618.5:ENST00000440400.2:ENST00000424234.7:ENST00000589528.1:ENST00000390009.7:ENST00000495553.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	57	2	3.02513	4.317905	5.61068	0.0059965	3.21002e-4	0.0700606	0.0165409
chr6	17620975	17621075	3065333	0	-	0.38	(0.378,0.408]	chr6	284764	39	INTRON	INTRON	NUP153	ENSG00000124789.12	ENST00000613258.4:ENST00000537253.5:ENST00000262077.3	protein_coding	protein_coding	protein_coding	protein_coding	2	78	2	2.56408	4.317885	6.07169	0.00566993	4.98726e-5	0.0678837	0.00611327
chr11	12140459	12140559	4737325	0	+	0.39	(0.378,0.408]	chr11	438797	16	INTRON	INTRON	MICAL2	ENSG00000133816.18	ENST00000532179.5:ENST00000526065.1:ENST00000683283.1:ENST00000256194.8:ENST00000531732.5:ENST00000530823.1:ENST00000532420.1:ENST00000527546.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	61	2	3.14892	4.31782	5.48672	0.00499984	1.83012e-4	0.0617433	0.01176
chr7	2356019	2356119	3269632	0	+	0.41	(0.408,0.44]	chr7	303797	2	INTRON	INTRON	EIF3B	ENSG00000106263.19	ENST00000431643.5:ENST00000360876.9:ENST00000413917.5:ENST00000397011.2	protein_coding	protein_coding	protein_coding	protein_coding	3	106	2	3.08999	4.3178	5.54561	1.89472e-4	1.20601e-4	0.0125683	0.00938389
chr10	75219952	75220049	4464433	0	+	0.494845	(0.476,0.515]	chr10	411831	2	INTRON	INTRON	VDAC2	ENSG00000165637.14	ENST00000543351.5:ENST00000298468.9:ENST00000344036.8:ENST00000472137.5:ENST00000332211.11:ENST00000475142.5:ENST00000481876.5:ENST00000313132.8:ENST00000498394.5:ENST00000468285.1:ENST00000447677.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	102	2	2.6224	4.317444999999999	6.01249	5.5634e-4	4.02459e-5	0.0214853	0.00539487
chr11	43889125	43889224	4780849	0	+	0.525253	(0.515,0.57]	chr11	441990	21	INTRON	INTRON	ALKBH3	ENSG00000166199.13	ENST00000532962.5:ENST00000302708.9:ENST00000534171.5:ENST00000530803.5:ENST00000529366.5:ENST00000533200.5:ENST00000530754.5:ENST00000532410.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	51	2	3.25412	4.31744	5.38076	0.00224554	3.24968e-4	0.0435144	0.0165891
chr19	14568817	14568916	7145261	0	-	0.525253	(0.515,0.57]	chr19	721512	15	INTRON	INTRON	NDUFB7	ENSG00000099795.7	ENST00000215565.3:ENST00000593353.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	51	2	3.25412	4.31744	5.38076	0.00224554	3.24968e-4	0.0435144	0.0165891
chr1	10495821	10495920	23185	0	+	0.484848	(0.476,0.515]	chr1	2503	1	INTRON	INTRON	PEX14	ENSG00000142655.13	ENST00000472851.1:ENST00000356607.9:ENST00000491661.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	74	2	2.93046	4.317135	5.70381	0.00118985	1.75496e-4	0.031662	0.01216
chr5	79513259	79513356	2660136	0	-	0.474227	(0.44,0.476]	chr5	252131	6	UTR5	UTR5:EXON_MRNA	HOMER1	ENSG00000152413.15	ENST00000334082.11	protein_coding	protein_coding	protein_coding	protein_coding	2	76	2	2.59888	4.317085	6.03529	0.00487719	4.06961e-5	0.0640618	0.00539487
chr1	21082543	21082643	392683	0	-	0.49	(0.476,0.515]	chr1	46825	89	INTRON	INTRON	EIF4G3	ENSG00000075151.24	ENST00000374935.7:ENST00000602326.6:ENST00000685872.1:ENST00000686579.1:ENST00000688741.1:ENST00000684485.1:ENST00000400422.6:ENST00000634879.2:ENST00000693470.1:ENST00000685814.1:ENST00000356916.7:ENST00000682284.1:ENST00000438975.5:ENST00000411888.5:ENST00000463775.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	27	2	4.01777	4.31648	4.61519	0.0411361	0.00528365	0.1451	0.0656295
chr19	57793924	57794022	7105458	0	+	0.479592	(0.476,0.515]	chr19	713178	3	INTRON	INTRON	ZNF586	ENSG00000083828.16	ENST00000598885.5:ENST00000598183.1:ENST00000599802.1	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.01777	4.31648	4.61519	0.0411361	0.00528365	0.1451	0.0656295
chr20	50099880	50099980	7353827	0	-	0.49	(0.476,0.515]	chr20	749884	5	INTRON	INTRON	UBE2V1	ENSG00000244687.13	ENST00000340309.7:ENST00000371677.7:ENST00000415862.6:ENST00000557021.5:ENST00000617119.4:ENST00000625172.3:ENST00000396059.7:ENST00000371674.8:ENST00000371657.9:ENST00000483534.5:ENST00000492371.6:ENST00000486653.5:ENST00000490555.1:ENST00000493090.5:ENST00000467839.5:ENST00000472923.5:ENST00000432266.5:ENST00000470565.5:ENST00000490289.5:ENST00000462217.5:ENST00000461960.5:ENST00000473860.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	27	2	4.01777	4.31648	4.61519	0.0411361	0.00528365	0.1451	0.0656295
chr5	37320154	37320253	2602238	0	-	0.494949	(0.476,0.515]	chr5	247417	17	INTRON	INTRON	NUP155	ENSG00000113569.16	ENST00000231498.8:ENST00000381843.6:ENST00000513532.1	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.01777	4.31648	4.61519	0.0411361	0.00528365	0.1451	0.0656295
chr8	53840426	53840519	3952695	0	-	0.483871	(0.476,0.515]	chr8	362486	6	INTRON	INTRON	ATP6V1H	ENSG00000047249.18	ENST00000359530.7:ENST00000355221.7:ENST00000396774.6:ENST00000524164.5:ENST00000519588.1:ENST00000521275.5:ENST00000524234.1:ENST00000521335.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	27	2	4.01777	4.31648	4.61519	0.0411361	0.00528365	0.1451	0.0656295
chrX	40076932	40077032	7804641	0	-	0.49	(0.476,0.515]	chrX	795790	4	SS3_PROX	SS3_PROX:INTRON	BCOR	ENSG00000183337.18	ENST00000413905.6:ENST00000378455.8:ENST00000397354.7:ENST00000342274.8:ENST00000615339.2:ENST00000680831.1:ENST00000378444.9:ENST00000679513.1:ENST00000672922.2:ENST00000442018.6:ENST00000673391.1:ENST00000427012.3:ENST00000406200.4:ENST00000490976.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	27	2	4.01777	4.31648	4.61519	0.0411361	0.00528365	0.1451	0.0656295
chr1	201871727	201871827	292203	0	+	0.38	(0.378,0.408]	chr1	33624	4	SS5_PROX	SS5_PROX:INTRON	IPO9	ENSG00000198700.10	ENST00000361565.9	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	3.82294	4.31631	4.80968	0.044228	0.00679828	0.162255	0.0711802
chr8	127906923	127907023	3861181	0	+	0.48	(0.476,0.515]	chr8	355442	40	INTRON	INTRON	PVT1	ENSG00000249859.13	ENST00000667305.1:ENST00000690350.1:ENST00000653522.1:ENST00000664214.1:ENST00000664139.1:ENST00000661830.1:ENST00000657289.1:ENST00000504719.7:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000656880.1:ENST00000660200.1:ENST00000669132.1:ENST00000657211.1:ENST00000653845.1:ENST00000517525.2:ENST00000665856.1:ENST00000651587.1:ENST00000692980.1:ENST00000666353.1:ENST00000657183.1:ENST00000654324.1:ENST00000658556.1:ENST00000657693.1:ENST00000666080.1:ENST00000667539.1:ENST00000521951.1:ENST00000524165.6:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000664293.1:ENST00000657297.1:ENST00000662410.1:ENST00000670795.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000654091.1:ENST00000523328.6:ENST00000657356.1:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000662061.1:ENST00000667204.1:ENST00000656491.1:ENST00000667714.1:ENST00000654105.1:ENST00000665721.1:ENST00000518528.2:ENST00000669416.1:ENST00000660438.1:ENST00000661160.1:ENST00000659326.1:ENST00000665246.1:ENST00000657384.1:ENST00000666842.1:ENST00000517790.2:ENST00000522963.6:ENST00000654369.1:ENST00000661625.1:ENST00000657596.1:ENST00000664995.1:ENST00000656532.1:ENST00000661988.1:ENST00000670714.1:ENST00000669951.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000656693.1:ENST00000668123.1:ENST00000666776.1:ENST00000664299.1:ENST00000669272.1:ENST00000659912.1:ENST00000670532.1:ENST00000660896.1:ENST00000667149.1:ENST00000656396.1:ENST00000523068.2:ENST00000521122.2:ENST00000520913.2:ENST00000519481.6:ENST00000651568.1:ENST00000669082.1:ENST00000665166.1:ENST00000656948.1:ENST00000671088.1:ENST00000664924.1:ENST00000670204.1:ENST00000652695.1:ENST00000670602.1:ENST00000651664.1:ENST00000517838.6:ENST00000663461.1:ENST00000513868.6:ENST00000670626.1:ENST00000653406.1	lncRNA	lncRNA	lncRNA	lncRNA	1	56	2	3.13389	4.31628	5.49867	0.00405473	4.28561e-4	0.0578376	0.0189958
chr16	89488137	89488237	6543578	0	-	0.35	(0.32,0.35]	chr16	634281	565	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	112	2	2.27097	4.315925	6.36088	0.00347642	2.93539e-5	0.0540643	0.00449807
chr15	28321866	28321964	6124068	0	-	0.571429	(0.57,1]	chr15	583418	4	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HERC2	ENSG00000128731.18	ENST00000261609.13:ENST00000564734.5:ENST00000563945.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	50	2	3.50161	4.31591	5.13021	1.21664e-4	3.17447e-5	0.00992813	0.00449886
chr1	16367786	16367862	35765	0	+	0.5	(0.476,0.515]	chr1	4350	2	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	SZRD1	ENSG00000055070.17	ENST00000475078.1:ENST00000471507.5:ENST00000401089.3:ENST00000486763.5:ENST00000401088.9:ENST00000475554.5:ENST00000476423.5:ENST00000472351.5:ENST00000492354.1:ENST00000472461.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	27	2	4.10113	4.31568	4.53023	0.0226984	0.0119748	0.124921	0.0899583
chr11	34469090	34469187	4768969	0	+	0.505155	(0.476,0.515]	chr11	441274	3	INTRON	INTRON	CAT	ENSG00000121691.7	ENST00000241052.5	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.10113	4.31568	4.53023	0.0226984	0.0119748	0.124921	0.0899583
chr12	76433659	76433759	5371113	0	-	0.5	(0.476,0.515]	chr12	512466	105	INTRON	INTRON	OSBPL8	ENSG00000091039.17	ENST00000261183.8:ENST00000393249.6:ENST00000611266.4:ENST00000393250.8:ENST00000547540.5:ENST00000548341.5:ENST00000553139.5:ENST00000549570.5:ENST00000550628.5:ENST00000549646.5	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.10113	4.31568	4.53023	0.0226984	0.0119748	0.124921	0.0899583
chr16	3693673	3693772	6434236	0	-	0.515152	(0.476,0.515]	chr16	619370	23	INTRON	INTRON	TRAP1	ENSG00000126602.11	ENST00000246957.10:ENST00000538171.5:ENST00000571804.5:ENST00000574941.5:ENST00000576106.5:ENST00000571011.1:ENST00000570403.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	27	2	4.10113	4.31568	4.53023	0.0226984	0.0119748	0.124921	0.0899583
chr17	38300266	38300365	6605130	0	+	0.484848	(0.476,0.515]	chr17	642941	4	INTRON	INTRON	MRPL45	ENSG00000278845.5	ENST00000619548.1:ENST00000613675.5	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.10113	4.31568	4.53023	0.0226984	0.0119748	0.124921	0.0899583
chr20	35784008	35784108	7263003	0	+	0.48	(0.476,0.515]	chr20	738060	10	INTRON	INTRON	PHF20	ENSG00000025293.17	ENST00000461122.5:ENST00000461405.1:ENST00000374012.8:ENST00000452270.5:ENST00000374000.8:ENST00000339089.10:ENST00000481202.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	27	2	4.10113	4.31568	4.53023	0.0226984	0.0119748	0.124921	0.0899583
chr22	37619299	37619399	7510059	0	+	0.5	(0.476,0.515]	chr22	766702	1	SS3_PROX	SS3_PROX:INTRON	GGA1	ENSG00000100083.19	ENST00000381756.9:ENST00000343632.9:ENST00000405147.7:ENST00000429218.5:ENST00000325180.12:ENST00000439161.5:ENST00000449944.5:ENST00000411501.5:ENST00000453208.5:ENST00000406772.5:ENST00000326597.6:ENST00000413251.5:ENST00000423024.1:ENST00000491295.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	27	2	4.10113	4.31568	4.53023	0.0226984	0.0119748	0.124921	0.0899583
chr3	158137897	158137997	1538556	0	+	0.5	(0.476,0.515]	chr3	160273	11	INTRON	INTRON	RSRC1	ENSG00000174891.14	ENST00000480820.5:ENST00000494002.5:ENST00000295930.7:ENST00000471994.5:ENST00000683733.1:ENST00000682221.1:ENST00000683831.1:ENST00000683516.1:ENST00000482822.3:ENST00000476899.6:ENST00000464171.5:ENST00000611884.5:ENST00000682164.1:ENST00000684604.1:ENST00000683899.1:ENST00000682500.1:ENST00000684683.1:ENST00000684512.1:ENST00000683394.1:ENST00000684156.1:ENST00000312179.10:ENST00000475278.6:ENST00000480119.5:ENST00000471911.5:ENST00000683137.1:ENST00000477788.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	27	2	4.10113	4.31568	4.53023	0.0226984	0.0119748	0.124921	0.0899583
chr5	72883829	72883927	2387814	0	+	0.5	(0.476,0.515]	chr5	230432	2	INTRON	INTRON	TNPO1	ENSG00000083312.19	ENST00000680533.1:ENST00000337273.10:ENST00000680025.1:ENST00000523768.5:ENST00000681711.1:ENST00000679378.1:ENST00000506351.6:ENST00000505082.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	27	2	4.10113	4.31568	4.53023	0.0226984	0.0119748	0.124921	0.0899583
chr5	177436943	177437030	2555976	0	+	0.505747	(0.476,0.515]	chr5	244232	4	SS5_PROX	SS5_PROX:INTRON	GRK6	ENSG00000198055.11	ENST00000355472.10:ENST00000393576.7:ENST00000528793.5:ENST00000355958.9:ENST00000515666.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	27	2	4.10113	4.31568	4.53023	0.0226984	0.0119748	0.124921	0.0899583
chr8	48050318	48050418	3752663	0	+	0.5	(0.476,0.515]	chr8	349069	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS5_PROX:INTRON	UBE2V2	ENSG00000169139.12	ENST00000523432.5:ENST00000521346.5:ENST00000523111.7:ENST00000518360.5:ENST00000517630.5:ENST00000520809.1:ENST00000520595.2:ENST00000521628.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	27	2	4.10113	4.31568	4.53023	0.0226984	0.0119748	0.124921	0.0899583
chr9	123180092	123180184	4339589	0	-	0.51087	(0.476,0.515]	chr9	398934	5	INTRON	INTRON	STRBP	ENSG00000165209.19	ENST00000348403.10:ENST00000447404.6:ENST00000360998.3:ENST00000407982.6:ENST00000479114.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	27	2	4.10113	4.31568	4.53023	0.0226984	0.0119748	0.124921	0.0899583
chrX	55723471	55723569	7665953	0	+	0.367347	(0.35,0.378]	chrX	784997	8	INTRON	INTRON	RRAGB	ENSG00000083750.13	ENST00000374941.9:ENST00000414239.5:ENST00000262850.7:ENST00000498762.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	63	2	2.99044	4.31555	5.64066	0.00894806	1.14247e-4	0.0799922	0.0091431
chr21	6257645	6257745	7425215	0	-	0.3	(0.28,0.32]	chr21	757453	24	INTRON	INTRON	ENSG00000275496	ENSG00000275496.4	ENST00000621924.4:ENST00000617746.4:ENST00000624446.1:ENST00000623405.3:ENST00000623575.3:ENST00000623506.1	lncRNA	lncRNA	lncRNA	lncRNA	2	96	2	2.89708	4.315265	5.73345	0.00257346	1.71668e-4	0.0451443	0.0113605
chr18	31929162	31929260	6961259	0	-	0.377551	(0.35,0.378]	chr18	688784	22	INTRON	INTRON	TRAPPC8	ENSG00000153339.15	ENST00000283351.10:ENST00000580104.5:ENST00000582539.5:ENST00000582513.5:ENST00000578658.1:ENST00000584876.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	88	2	2.28125	4.3152	6.34915	0.0182271	2.4104600000000002e-06	0.107842	9.83942e-4
chrX	24793919	24794018	7632719	0	+	0.464646	(0.44,0.476]	chrX	781738	2	EXON_LNCRNA	EXON_LNCRNA:INTRON	POLA1	ENSG00000101868.13	ENST00000672178.1:ENST00000379068.8:ENST00000379059.7:ENST00000611764.2:ENST00000480125.1:ENST00000677083.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	122	2	4.29331	4.315189999999999	4.33707	2.07695e-5	1.36744e-5	0.00371583	0.00275994
chr19	798342	798427	6992098	0	+	0.576471	(0.57,1]	chr19	692226	5	INTRON	INTRON	PTBP1	ENSG00000011304.22	ENST00000635647.1:ENST00000627714.2:ENST00000676227.1:ENST00000677277.1:ENST00000592804.2:ENST00000349038.8:ENST00000590887.5:ENST00000586481.5:ENST00000586944.5:ENST00000356948.11:ENST00000394601.8:ENST00000677717.1:ENST00000589575.5:ENST00000587191.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	51	2	2.73499	4.314995	5.895	0.00237434	6.04397e-7	0.0438057	4.21585e-4
chr1	65538395	65538495	138369	0	+	0.35	(0.32,0.35]	chr1	15499	122	INTRON	INTRON	LEPR	ENSG00000116678.20	ENST00000371060.7:ENST00000371059.7:ENST00000349533.11:ENST00000616738.4:ENST00000344610.12:ENST00000462765.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	61	2	3.49869	4.31496	5.13123	0.00394704	0.00108004	0.0548259	0.0300133
chr20	21304172	21304271	7248145	0	+	0.323232	(0.32,0.35]	chr20	735885	3	INTRON	INTRON	XRN2	ENSG00000088930.8	ENST00000377191.5	protein_coding	protein_coding	protein_coding	protein_coding	1	61	2	3.49869	4.31496	5.13123	0.00394704	0.00108004	0.0548259	0.0300133
chr11	10506183	10506282	4734475	0	+	0.454545	(0.44,0.476]	chr11	438425	4	UTR3	UTR3:EXON_MRNA	AMPD3	ENSG00000133805.16	ENST00000444303.6:ENST00000396554.7:ENST00000396553.7:ENST00000529507.5	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.01038	4.314959999999999	4.61954	0.0433743	0.00506805	0.148082	0.0646039
chr15	64511955	64512055	6044603	0	+	0.46	(0.44,0.476]	chr15	575696	90	INTRON	INTRON	ZNF609	ENSG00000180357.10	ENST00000326648.5:ENST00000558680.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	27	2	4.01038	4.314959999999999	4.61954	0.0433743	0.00506805	0.148082	0.0646039
chr16	23975214	23975313	6325154	0	+	0.474747	(0.44,0.476]	chr16	605705	110	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000498739.1:ENST00000647422.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	27	2	4.01038	4.314959999999999	4.61954	0.0433743	0.00506805	0.148082	0.0646039
chr16	69374543	69374642	6508086	0	-	0.464646	(0.44,0.476]	chr16	630123	18	INTRON	INTRON	TERF2	ENSG00000132604.11	ENST00000254942.8:ENST00000566750.5:ENST00000569542.6:ENST00000566257.5:ENST00000569611.6:ENST00000567296.6:ENST00000569280.1:ENST00000567841.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	27	2	4.01038	4.314959999999999	4.61954	0.0433743	0.00506805	0.148082	0.0646039
chr19	40758283	40758383	7070160	0	+	0.46	(0.44,0.476]	chr19	706494	1	SS3_PROX	SS3_PROX:INTRON	SNRPA	ENSG00000077312.9	ENST00000601545.5:ENST00000601253.5:ENST00000597353.5:ENST00000599362.5:ENST00000599570.5:ENST00000243563.8:ENST00000601393.1:ENST00000598923.1:ENST00000600456.1:ENST00000598452.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	27	2	4.01038	4.314959999999999	4.61954	0.0433743	0.00506805	0.148082	0.0646039
chr9	137624850	137624950	4223530	0	+	0.46	(0.44,0.476]	chr9	388152	44	INTRON	INTRON	EHMT1	ENSG00000181090.21	ENST00000462484.5:ENST00000371394.6:ENST00000630754.2:ENST00000460843.6:ENST00000626216.2:ENST00000637593.1:ENST00000629335.2:ENST00000637335.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	27	2	4.01038	4.314959999999999	4.61954	0.0433743	0.00506805	0.148082	0.0646039
chr6	89832438	89832538	2916469	0	+	0.37	(0.35,0.378]	chr6	275600	7	INTRON	INTRON	CASP8AP2	ENSG00000118412.13	ENST00000552401.5:ENST00000419040.6:ENST00000547893.5:ENST00000237177.10:ENST00000551025.4:ENST00000548224.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	65	2	3.47933	4.314745	5.15016	0.0015613	9.78549e-4	0.0360352	0.0287765
chr12	2973946	2974046	5066675	0	+	0.47	(0.44,0.476]	chr12	478187	132	INTRON	INTRON	TEAD4	ENSG00000197905.10	ENST00000358409.7:ENST00000359864.8:ENST00000540314.2:ENST00000536826.2:ENST00000543035.6:ENST00000397122.6:ENST00000443986.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	27	2	4.1054	4.31405	4.5227	0.0220205	0.0128818	0.123836	0.0926667
chr15	22531470	22531569	5974883	0	+	0.474747	(0.44,0.476]	chr15	568084	141	INTRON	INTRON	HERC2P2	ENSG00000276550.5	ENST00000613386.4:ENST00000619021.4	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	27	2	4.1054	4.31405	4.5227	0.0220205	0.0128818	0.123836	0.0926667
chr17	31983404	31983504	6596148	0	+	0.47	(0.44,0.476]	chr17	641582	3	SS5_PROX	SS5_PROX:INTRON	SUZ12	ENSG00000178691.11	ENST00000322652.10:ENST00000580398.1	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.1054	4.31405	4.5227	0.0220205	0.0128818	0.123836	0.0926667
chr5	140112828	140112927	2501617	0	+	0.464646	(0.44,0.476]	chr5	239112	36	INTRON	INTRON	PURA	ENSG00000185129.8	ENST00000505703.2:ENST00000651386.1	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.1054	4.31405	4.5227	0.0220205	0.0128818	0.123836	0.0926667
chrX	123904189	123904289	7716633	0	+	0.47	(0.44,0.476]	chrX	789435	31	INTRON	INTRON	XIAP	ENSG00000101966.13	ENST00000481776.5:ENST00000434753.7:ENST00000468691.5:ENST00000371199.8:ENST00000497640.1:ENST00000355640.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	27	2	4.1054	4.31405	4.5227	0.0220205	0.0128818	0.123836	0.0926667
chr1	222714455	222714549	319918	0	+	0.393617	(0.378,0.408]	chr1	36765	6	INTRON	INTRON	BROX	ENSG00000162819.12	ENST00000612948.4:ENST00000340934.10:ENST00000537020.5:ENST00000539697.5:ENST00000426638.1:ENST00000473962.5:ENST00000469236.5:ENST00000489191.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	28	2	3.96471	4.314045	4.66338	0.032421	0.0103469	0.145026	0.0850389
chr10	77915837	77915937	4654685	0	-	0.39	(0.378,0.408]	chr10	428776	34	INTRON	INTRON	DLG5	ENSG00000151208.17	ENST00000372391.7	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	3.96471	4.314045	4.66338	0.032421	0.0103469	0.145026	0.0850389
chr19	52277941	52278041	7094770	0	+	0.38	(0.378,0.408]	chr19	711268	4	SS5_PROX	SS5_PROX:INTRON	ZNF766	ENSG00000196214.11	ENST00000439461.6:ENST00000593703.1:ENST00000599581.5:ENST00000601711.5:ENST00000593612.1:ENST00000595000.5:ENST00000595149.5:ENST00000600821.5:ENST00000600016.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	28	2	3.96471	4.314045	4.66338	0.032421	0.0103469	0.145026	0.0850389
chr2	10175728	10175828	691261	0	+	0.4	(0.378,0.408]	chr2	81109	196	INTRON	INTRON	RRM2	ENSG00000171848.16	ENST00000641498.1:ENST00000381786.7	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	0	28	2	3.96471	4.314045	4.66338	0.032421	0.0103469	0.145026	0.0850389
chr20	49082937	49083035	7284166	0	+	0.408163	(0.378,0.408]	chr20	740884	40	INTRON	INTRON	CSE1L	ENSG00000124207.17	ENST00000396192.7:ENST00000262982.3	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	3.96471	4.314045	4.66338	0.032421	0.0103469	0.145026	0.0850389
chr4	138801615	138801715	2049360	0	+	0.44	(0.408,0.44]	chr4	203250	8	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	ENSG00000250501	ENSG00000250501.3	ENST00000661669.1:ENST00000671501.1:ENST00000652863.1:ENST00000666159.1:ENST00000658543.1:ENST00000662769.1:ENST00000663319.1:ENST00000670746.1:ENST00000502606.1:ENST00000659480.1:ENST00000513400.2:ENST00000666313.1:ENST00000666509.1:ENST00000663892.1	lncRNA	lncRNA	lncRNA	lncRNA	1	63	2	3.62972	4.314045	4.99837	0.00131369	7.19047e-4	0.0333932	0.0246202
chr9	77312392	77312492	4146309	0	+	0.39	(0.378,0.408]	chr9	377936	39	INTRON	INTRON	VPS13A	ENSG00000197969.14	ENST00000376636.7:ENST00000360280.8:ENST00000643348.1:ENST00000645632.1:ENST00000423463.6:ENST00000493341.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	28	2	3.96471	4.314045	4.66338	0.032421	0.0103469	0.145026	0.0850389
chr16	16567093	16567193	6311533	0	+	0.34	(0.32,0.35]	chr16	604098	671	INTRON	INTRON	ENSG00000260126	ENSG00000260126.2	ENST00000567465.2	lncRNA	lncRNA	lncRNA	lncRNA	2	81	2	2.78706	4.31387	5.84068	0.00253645	3.015e-4	0.0465056	0.0160895
chr1	52862713	52862808	105109	0	+	0.326316	(0.32,0.35]	chr1	13740	15	INTRON	INTRON	ZYG11A	ENSG00000203995.10	ENST00000371532.5:ENST00000612017.4:ENST00000371528.2	protein_coding	protein_coding	protein_coding	protein_coding	3	99	2	2.33698	4.3136	6.29022	0.00536261	4.1166e-5	0.0663076	0.00544123
chr11	62751619	62751713	4961038	0	-	0.574468	(0.57,1]	chr11	466828	8	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	ZBTB3	ENSG00000185670.9	ENST00000530112.2:ENST00000394807.5:ENST00000673933.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	38	2	3.42323	4.313595	5.20396	8.58388e-4	5.65393e-5	0.0267428	0.00613846
chr17	27104811	27104911	6579873	0	+	0.58	(0.57,1]	chr17	639586	80	INTRON	INTRON	ENSG00000285822	ENSG00000285822.1	ENST00000649401.1	lncRNA	lncRNA	lncRNA	lncRNA	1	38	2	3.42323	4.313595	5.20396	8.58388e-4	5.65393e-5	0.0267428	0.00613846
chr1	212287986	212288085	308098	0	+	0.373737	(0.35,0.378]	chr1	35547	13	INTRON	INTRON	PPP2R5A	ENSG00000066027.12	ENST00000261461.7	protein_coding	protein_coding	protein_coding	protein_coding	1	58	2	3.36514	4.313195	5.26125	0.00191117	0.00173699	0.03947	0.03851
chr5	32442830	32442930	2599310	0	-	0.39	(0.378,0.408]	chr5	246966	224	INTRON	INTRON	ZFR	ENSG00000056097.16	ENST00000265069.13:ENST00000505366.1:ENST00000505204.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	57	2	3.56208	4.3131	5.06412	0.0030522	6.94246e-4	0.0493883	0.0240761
chr2	8857180	8857280	1062085	0	-	0.4	(0.378,0.408]	chr2	113302	46	UTR3	UTR3:EXON_MRNA	MBOAT2	ENSG00000143797.12	ENST00000305997.8	protein_coding	protein_coding	protein_coding	protein_coding	1	57	2	3.1136	4.31267	5.51174	0.00443339	5.93655e-4	0.061054	0.0225024
chr15	58619872	58619972	6192201	0	-	0.39	(0.378,0.408]	chr15	589901	75	INTRON	INTRON	ADAM10	ENSG00000137845.15	ENST00000260408.8:ENST00000402627.5:ENST00000561288.1:ENST00000482945.5:ENST00000396136.6:ENST00000470269.5:ENST00000462061.1:ENST00000481164.1:ENST00000475898.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	27	2	4.10661	4.312575	4.51854	0.0399023	0.00748824	0.143072	0.0772645
chr16	87341588	87341686	6537400	0	-	0.408163	(0.378,0.408]	chr16	633394	50	INTRON	INTRON	FBXO31	ENSG00000103264.18	ENST00000311635.12:ENST00000565593.1:ENST00000618298.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	27	2	4.10661	4.312575	4.51854	0.0399023	0.00748824	0.143072	0.0772645
chr2	38319119	38319219	1098760	0	-	0.4	(0.378,0.408]	chr2	117855	1	SS3_PROX	SS3_PROX:INTRON	ATL2	ENSG00000119787.14	ENST00000378954.9:ENST00000406122.5:ENST00000405384.6:ENST00000402054.5:ENST00000419554.6:ENST00000651368.1:ENST00000452935.6:ENST00000449130.5:ENST00000443098.5:ENST00000456736.5:ENST00000474535.2:ENST00000472097.1:ENST00000451483.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	27	2	4.10661	4.312575	4.51854	0.0399023	0.00748824	0.143072	0.0772645
chr20	17973908	17974006	7243262	0	+	0.408163	(0.378,0.408]	chr20	735416	32	INTRON	INTRON	MGME1	ENSG00000125871.14	ENST00000377710.10:ENST00000377709.1:ENST00000377704.4:ENST00000463219.1:ENST00000467391.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	27	2	4.10661	4.312575	4.51854	0.0399023	0.00748824	0.143072	0.0772645
chr7	127716670	127716769	3403054	0	+	0.383838	(0.378,0.408]	chr7	318124	87	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.10661	4.312575	4.51854	0.0399023	0.00748824	0.143072	0.0772645
chrX	44910385	44910485	7648974	0	+	0.38	(0.378,0.408]	chrX	782726	360	INTRON	INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000675440.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000621147.5:ENST00000475233.1:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	27	2	4.10661	4.312575	4.51854	0.0399023	0.00748824	0.143072	0.0772645
chr1	36059036	36059135	72451	0	+	0.272727	[0,0.28]	chr1	9249	34	UTR3	UTR3:EXON_MRNA	AGO3	ENSG00000126070.20	ENST00000373191.9	protein_coding	protein_coding	protein_coding	protein_coding	0	30	2	4.07901	4.312555	4.5461	0.0494049	0.0365918	0.174117	0.138959
chr1	245908736	245908835	674711	0	-	0.272727	[0,0.28]	chr1	79681	445	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000366517.5:ENST00000366516.5:ENST00000490107.6:ENST00000470510.5:ENST00000493441.5:ENST00000488153.5:ENST00000492487.5:ENST00000391836.3:ENST00000464398.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	30	2	4.07901	4.312555	4.5461	0.0494049	0.0365918	0.174117	0.138959
chr12	132840453	132840553	5450346	0	-	0.28	[0,0.28]	chr12	522135	82	UTR3	UTR3:EXON_MRNA:INTRON	CHFR	ENSG00000072609.18	ENST00000541341.5:ENST00000450056.7:ENST00000266880.11:ENST00000536843.5:ENST00000443047.6:ENST00000545046.5:ENST00000544268.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	30	2	4.07901	4.312555	4.5461	0.0494049	0.0365918	0.174117	0.138959
chr14	67940027	67940127	5766576	0	+	0.2	[0,0.28]	chr14	547062	308	INTRON	INTRON	RAD51B	ENSG00000182185.19	ENST00000487861.5:ENST00000471583.6:ENST00000479335.5:ENST00000487270.5:ENST00000488612.5:ENST00000553595.5:ENST00000497460.5:ENST00000492236.5:ENST00000554244.5:ENST00000478014.5:ENST00000469165.6:ENST00000460526.5:ENST00000468382.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	30	2	4.07901	4.312555	4.5461	0.0494049	0.0365918	0.174117	0.138959
chr4	51894720	51894819	1959082	0	+	0.181818	[0,0.28]	chr4	196342	25	INTRON	INTRON	DCUN1D4	ENSG00000109184.15	ENST00000509376.5:ENST00000381441.7:ENST00000334635.10:ENST00000507741.5:ENST00000477560.5:ENST00000451288.6:ENST00000510587.5:ENST00000507659.5:ENST00000505634.5:ENST00000510808.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	30	2	4.07901	4.312555	4.5461	0.0494049	0.0365918	0.174117	0.138959
chr6	167013967	167014067	3033516	0	+	0.28	[0,0.28]	chr6	282655	4	SS5_PROX	SS5_PROX:INTRON	CEP43	ENSG00000213066.13	ENST00000622353.4:ENST00000366847.9:ENST00000349556.4	protein_coding	protein_coding	protein_coding	protein_coding	0	30	2	4.07901	4.312555	4.5461	0.0494049	0.0365918	0.174117	0.138959
chr8	42420165	42420265	3941346	0	-	0.25	[0,0.28]	chr8	361240	18	INTRON	INTRON	SLC20A2	ENSG00000168575.10	ENST00000342228.7:ENST00000520262.6:ENST00000520179.5	protein_coding	protein_coding	protein_coding	protein_coding	0	30	2	4.07901	4.312555	4.5461	0.0494049	0.0365918	0.174117	0.138959
chr20	21304271	21304371	7248146	0	+	0.39	(0.378,0.408]	chr20	735885	4	INTRON	INTRON	XRN2	ENSG00000088930.8	ENST00000377191.5	protein_coding	protein_coding	protein_coding	protein_coding	3	99	2	2.56413	4.312525	6.06092	0.0024299	9.1834e-6	0.0444645	0.00217645
chr21	43932643	43932743	7414468	0	+	0.55	(0.515,0.57]	chr21	755706	68	INTRON	INTRON	AGPAT3	ENSG00000160216.21	ENST00000291572.13:ENST00000448287.5:ENST00000398061.5:ENST00000327505.6:ENST00000445582.5:ENST00000398063.6	protein_coding	protein_coding	protein_coding	protein_coding	1	54	2	3.49496	4.31235	5.12974	9.61701e-4	4.54392e-4	0.0282401	0.0192381
chr16	71739541	71739641	6513746	0	-	0.45	(0.44,0.476]	chr16	631074	2	SS3_PROX	SS3_PROX:INTRON	AP1G1	ENSG00000166747.13	ENST00000299980.9:ENST00000569748.5:ENST00000564155.5:ENST00000393512.7:ENST00000565009.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	58	2	2.89047	4.31215	5.73383	0.00955699	1.70474e-4	0.0863913	0.0119761
chr11	57728107	57728207	4792772	0	+	0.4	(0.378,0.408]	chr11	443656	149	INTRON	INTRON	ENSG00000288534:TMX2	ENSG00000288534.1:ENSG00000213593.10	ENST00000673781.1:ENST00000673810.1:ENST00000278422.9:ENST00000674116.1:ENST00000524972.5:ENST00000378312.8:ENST00000530114.5:ENST00000525035.5:ENST00000529403.1:ENST00000528110.5:ENST00000533602.5:ENST00000528042.1:ENST00000674060.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	27	2	4.21226	4.311975	4.41169	0.0199606	0.0177403	0.11319	0.109608
chr12	49045642	49045730	5320669	0	-	0.397727	(0.378,0.408]	chr12	506833	3	SS5_PROX	SS5_PROX:INTRON	KMT2D	ENSG00000167548.18	ENST00000683543.2:ENST00000301067.12:ENST00000685166.1:ENST00000692637.1:ENST00000688095.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	27	2	4.21226	4.311975	4.41169	0.0199606	0.0177403	0.11319	0.109608
chr2	101265447	101265547	835993	0	+	0.39	(0.378,0.408]	chr2	93871	4	SS5_PROX	SS5_PROX:INTRON	CNOT11	ENSG00000158435.8	ENST00000289382.8:ENST00000462489.1:ENST00000420107.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	27	2	4.21226	4.311975	4.41169	0.0199606	0.0177403	0.11319	0.109608
chr2	127726063	127726150	1225020	0	-	0.37931	(0.378,0.408]	chr2	130475	5	INTRON	INTRON	WDR33	ENSG00000136709.12	ENST00000322313.9	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.21226	4.311975	4.41169	0.0199606	0.0177403	0.11319	0.109608
chr3	5135371	5135471	1353706	0	+	0.4	(0.378,0.408]	chr3	142361	64	INTRON	INTRON	ARL8B	ENSG00000134108.14	ENST00000429403.5:ENST00000256496.8:ENST00000455168.5:ENST00000444332.1:ENST00000419534.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	27	2	4.21226	4.311975	4.41169	0.0199606	0.0177403	0.11319	0.109608
chr6	37867391	37867490	2857509	0	+	0.393939	(0.378,0.408]	chr6	270225	470	INTRON	INTRON	ZFAND3	ENSG00000156639.12	ENST00000287218.9:ENST00000373391.6:ENST00000474522.5	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.21226	4.311975	4.41169	0.0199606	0.0177403	0.11319	0.109608
chr6	38816854	38816954	2861439	0	+	0.38	(0.378,0.408]	chr6	270433	8	INTRON	INTRON	DNAH8	ENSG00000124721.18	ENST00000327475.11:ENST00000449981.6:ENST00000359357.7	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.21226	4.311975	4.41169	0.0199606	0.0177403	0.11319	0.109608
chr7	76963615	76963715	3341192	0	+	0.38	(0.378,0.408]	chr7	311197	14	INTRON	INTRON	DTX2P1-UPK3BP1-PMS2P11	ENSG00000265479.7	ENST00000636308.1:ENST00000636708.1	lncRNA	lncRNA	lncRNA	lncRNA	0	27	2	4.21226	4.311975	4.41169	0.0199606	0.0177403	0.11319	0.109608
chr7	102410684	102410783	3371553	0	+	0.383838	(0.378,0.408]	chr7	315478	28	INTRON	INTRON	PRKRIP1	ENSG00000128563.13	ENST00000469763.5:ENST00000482549.5:ENST00000496391.5:ENST00000482465.5:ENST00000462601.5:ENST00000397912.3:ENST00000468316.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	27	2	4.21226	4.311975	4.41169	0.0199606	0.0177403	0.11319	0.109608
chr9	135952781	135952880	4372483	0	-	0.40404	(0.378,0.408]	chr9	402541	45	INTRON	INTRON	UBAC1	ENSG00000130560.9	ENST00000371756.4:ENST00000478485.1:ENST00000486258.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	27	2	4.21226	4.311975	4.41169	0.0199606	0.0177403	0.11319	0.109608
chr1	61183923	61184023	128411	0	+	0.41	(0.408,0.44]	chr1	14778	510	INTRON	INTRON	NFIA	ENSG00000162599.17	ENST00000371191.5:ENST00000664495.1:ENST00000476646.5:ENST00000407417.7:ENST00000479364.1:ENST00000371189.8:ENST00000670151.1:ENST00000664149.1:ENST00000662015.1:ENST00000403491.8:ENST00000371187.7:ENST00000485903.6:ENST00000371185.6:ENST00000371184.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	27	2	4.00385	4.3119700000000005	4.62009	0.0454568	0.00504155	0.149888	0.0646039
chr15	50681233	50681333	6173227	0	-	0.42	(0.408,0.44]	chr15	588397	178	INTRON	INTRON	TRPM7:ENSG00000288645	ENSG00000092439.16:ENSG00000288645.1	ENST00000646667.1:ENST00000560955.5:ENST00000676296.1	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.00385	4.3119700000000005	4.62009	0.0454568	0.00504155	0.149888	0.0646039
chr5	96775442	96775538	2682669	0	-	0.416667	(0.408,0.44]	chr5	253577	11	UTR3	UTR3:EXON_MRNA:INTRON	ERAP1	ENSG00000164307.13	ENST00000296754.7:ENST00000443439.7	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.00385	4.3119700000000005	4.62009	0.0454568	0.00504155	0.149888	0.0646039
chr6	149531362	149531462	3245416	0	-	0.44	(0.408,0.44]	chr6	301508	42	INTRON	INTRON	PPIL4	ENSG00000131013.4	ENST00000253329.3	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.00385	4.3119700000000005	4.62009	0.0454568	0.00504155	0.149888	0.0646039
chr7	2189163	2189263	3466494	0	-	0.43	(0.408,0.44]	chr7	324058	139	INTRON	INTRON	MAD1L1	ENSG00000002822.16	ENST00000406869.5:ENST00000399654.6:ENST00000402746.5:ENST00000265854.12:ENST00000464742.5:ENST00000459731.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	27	2	4.00385	4.3119700000000005	4.62009	0.0454568	0.00504155	0.149888	0.0646039
chr9	40093359	40093459	4258986	0	-	0.42	(0.408,0.44]	chr9	391902	1024	INTRON	INTRON	ENSG00000284116	ENSG00000284116.1	ENST00000639363.1	lncRNA	lncRNA	lncRNA	lncRNA	0	27	2	4.00385	4.3119700000000005	4.62009	0.0454568	0.00504155	0.149888	0.0646039
chr9	130062658	130062757	4211040	0	+	0.414141	(0.408,0.44]	chr9	385992	82	INTRON	INTRON	GPR107	ENSG00000148358.20	ENST00000372406.5:ENST00000372410.7:ENST00000347136.11:ENST00000493417.5:ENST00000610997.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	27	2	4.00385	4.3119700000000005	4.62009	0.0454568	0.00504155	0.149888	0.0646039
chr18	12371258	12371342	6947089	0	-	0.452381	(0.44,0.476]	chr18	687266	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	AFG3L2	ENSG00000141385.12	ENST00000269143.8:ENST00000691970.1:ENST00000691179.1:ENST00000687337.1:ENST00000692497.1:ENST00000688199.1:ENST00000590811.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	74	2	3.08877	4.31158	5.53439	5.52878e-4	4.05863e-4	0.021371	0.0185763
chr12	110292524	110292624	5226212	0	+	0.38	(0.378,0.408]	chr12	495239	4	SS5_PROX	SS5_PROX:INTRON	ATP2A2	ENSG00000174437.18	ENST00000552636.2:ENST00000308664.10:ENST00000539276.7:ENST00000377685.9:ENST00000548169.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	76	2	3.15415	4.31124	5.46833	7.05018e-4	4.11608e-4	0.024224	0.0181365
chr1	42203977	42204075	431115	0	-	0.438776	(0.408,0.44]	chr1	52298	44	INTRON	INTRON	FOXJ3	ENSG00000198815.9	ENST00000372573.5:ENST00000372572.5:ENST00000361776.5:ENST00000545068.5:ENST00000361346.6:ENST00000445886.5:ENST00000422278.1	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.10594	4.31099	4.51604	0.0219367	0.0137419	0.123836	0.0949306
chr10	92855222	92855321	4491683	0	+	0.434343	(0.408,0.44]	chr10	413705	62	INTRON	INTRON	EXOC6	ENSG00000138190.17	ENST00000671701.1:ENST00000672817.1:ENST00000371552.8:ENST00000443748.6:ENST00000371543.5:ENST00000260762.10	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.10594	4.31099	4.51604	0.0219367	0.0137419	0.123836	0.0949306
chr17	82899700	82899800	6695712	0	+	0.44	(0.408,0.44]	chr17	654988	2	SS5_PROX	SS5_PROX:INTRON	TBCD	ENSG00000141556.22	ENST00000682479.1:ENST00000682722.1:ENST00000684464.1:ENST00000684544.1:ENST00000681983.1:ENST00000684361.1:ENST00000683184.1:ENST00000683282.1:ENST00000684408.1:ENST00000355528.9:ENST00000683444.1:ENST00000684776.1:ENST00000683041.1:ENST00000684760.1:ENST00000684349.1:ENST00000682213.1:ENST00000683009.1:ENST00000682921.1:ENST00000539345.6:ENST00000684000.1:ENST00000684188.1:ENST00000684429.1:ENST00000682610.1:ENST00000683821.1:ENST00000682654.1:ENST00000576160.6:ENST00000571712.5:ENST00000576996.5:ENST00000574801.5:ENST00000683584.1:ENST00000682099.1:ENST00000684559.1:ENST00000571316.5:ENST00000576760.5:ENST00000572984.5:ENST00000683839.1:ENST00000574975.5:ENST00000572953.5:ENST00000571796.5:ENST00000682315.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	27	2	4.10594	4.31099	4.51604	0.0219367	0.0137419	0.123836	0.0949306
chr19	2212461	2212561	6996676	0	+	0.43	(0.408,0.44]	chr19	693510	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	DOT1L	ENSG00000104885.19	ENST00000398665.8:ENST00000686010.1:ENST00000591498.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	27	2	4.10594	4.31099	4.51604	0.0219367	0.0137419	0.123836	0.0949306
chr3	15792029	15792128	1623762	0	-	0.414141	(0.408,0.44]	chr3	168013	100	INTRON	INTRON	ANKRD28	ENSG00000206560.12	ENST00000399451.6:ENST00000624145.3:ENST00000683139.1:ENST00000412318.5:ENST00000497037.5:ENST00000451422.1:ENST00000498524.5:ENST00000439830.5:ENST00000461696.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	27	2	4.10594	4.31099	4.51604	0.0219367	0.0137419	0.123836	0.0949306
chr9	96389056	96389154	4295075	0	-	0.438776	(0.408,0.44]	chr9	394952	2	INTRON	INTRON	ZNF367	ENSG00000165244.7	ENST00000375256.5	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.10594	4.31099	4.51604	0.0219367	0.0137419	0.123836	0.0949306
chr6	4784105	4784205	2790939	0	+	0.28	[0,0.28]	chr6	263598	69	INTRON	INTRON	CDYL	ENSG00000153046.18	ENST00000328908.9:ENST00000491864.1:ENST00000440139.5:ENST00000483019.1:ENST00000397588.8:ENST00000472453.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	69	2	3.41114	4.31084	5.21054	0.00758653	0.00211753	0.0749063	0.0425644
chr6	157850672	157850772	3016037	0	+	0.36	(0.35,0.378]	chr6	281353	206	INTRON	INTRON	SNX9	ENSG00000130340.17	ENST00000614703.4:ENST00000614800.4:ENST00000680863.1:ENST00000679814.1:ENST00000680464.1:ENST00000681186.1:ENST00000679732.1:ENST00000681183.1:ENST00000681534.1:ENST00000681651.1:ENST00000680089.1:ENST00000680078.1:ENST00000680974.1:ENST00000680095.1:ENST00000680015.1:ENST00000681138.1:ENST00000392185.8:ENST00000679790.1:ENST00000680495.1:ENST00000679691.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	58	2	3.41139	4.310785	5.21018	0.00228003	0.00143263	0.0426265	0.0347139
chr14	101989605	101989699	5820484	0	+	0.351064	(0.35,0.378]	chr14	552025	1	INTRON	INTRON	DYNC1H1	ENSG00000197102.14	ENST00000360184.10:ENST00000684561.1:ENST00000680313.1:ENST00000679720.1:ENST00000680715.1:ENST00000681283.1:ENST00000681822.1:ENST00000679910.1:ENST00000681574.1:ENST00000645039.2:ENST00000645149.2:ENST00000680200.1:ENST00000680120.1:ENST00000644881.2:ENST00000681066.1:ENST00000680423.1:ENST00000681536.1:ENST00000679486.1:ENST00000681010.1:ENST00000679629.1:ENST00000681123.1:ENST00000680874.1:ENST00000680137.1:ENST00000643508.2:ENST00000680808.1:ENST00000681311.1:ENST00000681859.1:ENST00000643684.1:ENST00000643958.2:ENST00000680001.1:ENST00000681668.1:ENST00000645114.2:ENST00000681751.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	60	2	2.92952	4.3107050000000005	5.69189	0.00881187	3.71413e-4	0.084878	0.0178698
chr9	111473895	111473994	4315189	0	-	0.414141	(0.408,0.44]	chr9	396845	5	INTRON	INTRON	ECPAS	ENSG00000136813.15	ENST00000684092.1:ENST00000338205.9:ENST00000259335.8:ENST00000602447.5:ENST00000602978.1	protein_coding	protein_coding	protein_coding	protein_coding	2	80	2	2.82461	4.31023	5.79585	0.00241819	3.36399e-5	0.0442901	0.00463632
chr1	235277242	235277342	663353	0	-	0.44	(0.408,0.44]	chr1	78552	161	INTRON	INTRON	ARID4B	ENSG00000054267.22	ENST00000349213.7:ENST00000366603.6:ENST00000264183.9:ENST00000421364.5:ENST00000491632.5:ENST00000418304.1:ENST00000466653.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	78	2	3.42828	4.31015	5.19202	0.0016671	9.1223e-5	0.0369207	0.00798362
chr1	94479102	94479197	166151	0	+	0.336842	(0.32,0.35]	chr1	18016	4	INTRON	INTRON	ABCD3	ENSG00000117528.14	ENST00000370214.9:ENST00000647998.2	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.06299	4.3098	4.55661	0.0559439	0.00927858	0.165463	0.0855292
chr1	113716703	113716802	524992	0	-	0.333333	(0.32,0.35]	chr1	61782	16	INTRON	INTRON	PHTF1	ENSG00000116793.16	ENST00000369604.6:ENST00000393357.6:ENST00000369600.5:ENST00000369598.5:ENST00000357783.6	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.06299	4.3098	4.55661	0.0559439	0.00927858	0.165463	0.0855292
chr1	184794584	184794682	601236	0	-	0.346939	(0.32,0.35]	chr1	71691	37	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	NIBAN1	ENSG00000135842.17	ENST00000417056.5:ENST00000367511.4:ENST00000487074.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	28	2	4.06299	4.3098	4.55661	0.0559439	0.00927858	0.165463	0.0855292
chr12	94391787	94391886	5389421	0	-	0.333333	(0.32,0.35]	chr12	513842	124	INTRON	INTRON	CEP83	ENSG00000173588.16	ENST00000397809.10:ENST00000339839.9:ENST00000547232.5:ENST00000547575.5:ENST00000549352.1:ENST00000551250.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	28	2	4.06299	4.3098	4.55661	0.0559439	0.00927858	0.165463	0.0855292
chr14	61065961	61066060	5739962	0	+	0.333333	(0.32,0.35]	chr14	545047	126	INTRON	INTRON	SLC38A6	ENSG00000139974.16	ENST00000354886.6:ENST00000525723.6:ENST00000491344.7:ENST00000451406.5:ENST00000529345.6:ENST00000526539.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	28	2	4.06299	4.3098	4.55661	0.0559439	0.00927858	0.165463	0.0855292
chr16	18871882	18871982	6457543	0	-	0.35	(0.32,0.35]	chr16	622809	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SMG1	ENSG00000157106.18	ENST00000446231.7:ENST00000565324.5:ENST00000563235.5:ENST00000568038.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	28	2	4.06299	4.3098	4.55661	0.0559439	0.00927858	0.165463	0.0855292
chr16	47671606	47671705	6345437	0	+	0.343434	(0.32,0.35]	chr16	609021	18	INTRON	INTRON	PHKB	ENSG00000102893.17	ENST00000566044.5:ENST00000299167.12:ENST00000696809.1:ENST00000323584.10:ENST00000566275.2:ENST00000566319.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	28	2	4.06299	4.3098	4.55661	0.0559439	0.00927858	0.165463	0.0855292
chr2	182939671	182939770	1285014	0	-	0.333333	(0.32,0.35]	chr2	135301	39	INTRON	INTRON	NCKAP1	ENSG00000061676.15	ENST00000361354.9:ENST00000360982.2:ENST00000478449.5:ENST00000471640.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	28	2	4.06299	4.3098	4.55661	0.0559439	0.00927858	0.165463	0.0855292
chr4	24569553	24569653	2118861	0	-	0.34	(0.32,0.35]	chr4	209244	62	INTRON	INTRON	DHX15	ENSG00000109606.13	ENST00000336812.5	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.06299	4.3098	4.55661	0.0559439	0.00927858	0.165463	0.0855292
chr4	88804810	88804910	2200431	0	-	0.35	(0.32,0.35]	chr4	215949	4	SS5_PROX	SS5_PROX:INTRON	FAM13A	ENSG00000138640.15	ENST00000395002.6:ENST00000264344.10:ENST00000503556.5:ENST00000511976.5:ENST00000508369.5:ENST00000513837.5:ENST00000504836.5:ENST00000507352.1:ENST00000502459.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	28	2	4.06299	4.3098	4.55661	0.0559439	0.00927858	0.165463	0.0855292
chr5	88197468	88197568	2669012	0	-	0.33	(0.32,0.35]	chr5	252628	4	SS5_PROX	SS5_PROX:INTRON	TMEM161B	ENSG00000164180.14	ENST00000514135.5:ENST00000296595.11:ENST00000511087.5:ENST00000510089.5:ENST00000506536.5:ENST00000511218.5:ENST00000512429.5:ENST00000515293.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	28	2	4.06299	4.3098	4.55661	0.0559439	0.00927858	0.165463	0.0855292
chr6	20831693	20831793	2831362	0	+	0.33	(0.32,0.35]	chr6	265673	501	INTRON	INTRON	CDKAL1	ENSG00000145996.11	ENST00000274695.8:ENST00000378610.1	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.06299	4.3098	4.55661	0.0559439	0.00927858	0.165463	0.0855292
chr7	67280628	67280727	3541642	0	-	0.323232	(0.32,0.35]	chr7	330372	59	INTRON	INTRON	PMS2P4	ENSG00000067601.9	ENST00000685171.1:ENST00000688358.1:ENST00000692496.1:ENST00000685583.1:ENST00000688710.1:ENST00000684859.1:ENST00000685318.1:ENST00000691713.1:ENST00000686389.1:ENST00000690253.1:ENST00000688815.1:ENST00000692171.1:ENST00000692360.1:ENST00000689281.1:ENST00000690241.1:ENST00000689629.1:ENST00000689043.1:ENST00000688809.1:ENST00000687432.1:ENST00000687680.1:ENST00000686900.1:ENST00000691782.1:ENST00000693356.1:ENST00000691384.1:ENST00000690440.1:ENST00000686719.1:ENST00000686561.1:ENST00000688238.1:ENST00000687826.1:ENST00000689908.1:ENST00000689385.1:ENST00000689855.1:ENST00000691806.1:ENST00000689028.1:ENST00000688599.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	28	2	4.06299	4.3098	4.55661	0.0559439	0.00927858	0.165463	0.0855292
chr9	6899026	6899126	4101574	0	+	0.34	(0.32,0.35]	chr9	373691	54	INTRON	INTRON	KDM4C	ENSG00000107077.19	ENST00000536108.5:ENST00000438023.5:ENST00000381306.7:ENST00000381309.8:ENST00000543771.5:ENST00000496464.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	28	2	4.06299	4.3098	4.55661	0.0559439	0.00927858	0.165463	0.0855292
chr9	132338507	132338607	4367000	0	-	0.33	(0.32,0.35]	chr9	401488	16	INTRON	INTRON	SETX	ENSG00000107290.14	ENST00000224140.6	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.06299	4.3098	4.55661	0.0559439	0.00927858	0.165463	0.0855292
chr1	65538095	65538195	138366	0	+	0.31	(0.28,0.32]	chr1	15499	119	INTRON	INTRON	LEPR	ENSG00000116678.20	ENST00000371060.7:ENST00000371059.7:ENST00000349533.11:ENST00000616738.4:ENST00000344610.12:ENST00000462765.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	69	2	3.08462	4.30932	5.53402	0.0078976	4.0843e-4	0.076155	0.0181306
chr1	229338904	229339004	652573	0	-	0.29	(0.28,0.32]	chr1	77248	110	INTRON	INTRON	CCSAP	ENSG00000154429.11	ENST00000366687.5:ENST00000284617.7:ENST00000366686.1:ENST00000483092.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	85	2	2.91124	4.309315	5.70739	0.00165124	8.32651e-4	0.0375241	0.0266389
chrX	53397511	53397609	7819926	0	-	0.469388	(0.44,0.476]	chrX	797703	5	INTRON	INTRON	SMC1A	ENSG00000072501.19	ENST00000375340.10:ENST00000322213.9:ENST00000675504.1:ENST00000674590.1	protein_coding	protein_coding	protein_coding	protein_coding	4	109	2	2.31264	4.30927	6.3059	0.00316873	1.74264e-6	0.0503085	7.93825e-4
chr1	8492067	8492167	370510	0	-	0.34	(0.32,0.35]	chr1	43466	257	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000377464.5:ENST00000400907.6:ENST00000656437.1:ENST00000464972.5:ENST00000659924.1:ENST00000480342.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	28	2	4.16186	4.309075	4.45629	0.026079	0.0246089	0.133676	0.12011
chr1	211970695	211970794	631725	0	-	0.333333	(0.32,0.35]	chr1	74710	16	INTRON	INTRON	INTS7	ENSG00000143493.13	ENST00000469606.5:ENST00000366994.8:ENST00000366993.7:ENST00000366992.7:ENST00000440600.6:ENST00000475798.5:ENST00000461212.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	28	2	4.16186	4.309075	4.45629	0.026079	0.0246089	0.133676	0.12011
chr1	227241782	227241882	650952	0	-	0.34	(0.32,0.35]	chr1	77102	220	INTRON	INTRON	CDC42BPA	ENSG00000143776.20	ENST00000366766.8:ENST00000366769.7:ENST00000334218.9:ENST00000366767.7:ENST00000366764.8:ENST00000478573.6:ENST00000682551.1:ENST00000462553.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	28	2	4.16186	4.309075	4.45629	0.026079	0.0246089	0.133676	0.12011
chr1	245930724	245930823	674935	0	-	0.343434	(0.32,0.35]	chr1	79698	9	EXON_MRNA	EXON_MRNA:INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000366517.5:ENST00000366516.5:ENST00000490107.6:ENST00000493441.5:ENST00000488153.5:ENST00000492487.5:ENST00000391836.3:ENST00000464398.1:ENST00000453676.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	28	2	4.16186	4.309075	4.45629	0.026079	0.0246089	0.133676	0.12011
chr10	31921812	31921911	4590252	0	-	0.333333	(0.32,0.35]	chr10	423177	109	INTRON	INTRON	ARHGAP12	ENSG00000165322.18	ENST00000344936.7:ENST00000375245.8:ENST00000396144.8:ENST00000375250.9	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.16186	4.309075	4.45629	0.026079	0.0246089	0.133676	0.12011
chr11	46429790	46429889	4945597	0	-	0.333333	(0.32,0.35]	chr11	463431	114	INTRON	INTRON	AMBRA1	ENSG00000110497.15	ENST00000683756.1:ENST00000534300.5:ENST00000533727.5:ENST00000314845.7:ENST00000458649.6:ENST00000528950.1	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.16186	4.309075	4.45629	0.026079	0.0246089	0.133676	0.12011
chr19	52707127	52707209	7207194	0	-	0.341463	(0.32,0.35]	chr19	731428	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ZNF611	ENSG00000213020.10	ENST00000540744.5:ENST00000543227.5:ENST00000453741.6:ENST00000652185.1:ENST00000595001.5:ENST00000602162.5:ENST00000319783.5:ENST00000595798.5:ENST00000601249.5:ENST00000601643.5:ENST00000600943.5:ENST00000598639.5:ENST00000597343.6:ENST00000598723.5:ENST00000640952.1:ENST00000596702.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	28	2	4.16186	4.309075	4.45629	0.026079	0.0246089	0.133676	0.12011
chr2	118103621	118103721	855339	0	+	0.35	(0.32,0.35]	chr2	96047	3	SS5_PROX	SS5_PROX:INTRON	INSIG2	ENSG00000125629.16	ENST00000411929.5:ENST00000245787.9:ENST00000485520.5:ENST00000471186.5:ENST00000467223.5:ENST00000488995.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	28	2	4.16186	4.309075	4.45629	0.026079	0.0246089	0.133676	0.12011
chr3	138215163	138215262	1514231	0	+	0.333333	(0.32,0.35]	chr3	158301	49	INTRON	INTRON	ARMC8	ENSG00000114098.18	ENST00000538260.5:ENST00000481646.5:ENST00000469044.6:ENST00000491704.5:ENST00000461600.5:ENST00000466749.5:ENST00000358441.6:ENST00000489213.5:ENST00000461822.5:ENST00000485396.5:ENST00000471453.5:ENST00000470821.5:ENST00000471709.5:ENST00000463485.5	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.16186	4.309075	4.45629	0.026079	0.0246089	0.133676	0.12011
chr4	123119484	123119584	2037609	0	+	0.33	(0.32,0.35]	chr4	202384	173	INTRON	INTRON	SPATA5	ENSG00000145375.9	ENST00000675612.1:ENST00000274008.5	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.16186	4.309075	4.45629	0.026079	0.0246089	0.133676	0.12011
chr20	38430131	38430213	7342259	0	-	0.463415	(0.44,0.476]	chr20	748317	5	EXON_LNCRNA	EXON_LNCRNA:SS3_PROX:SS5_PROX:INTRON	SNHG17	ENSG00000196756.14	ENST00000654008.2:ENST00000658076.1:ENST00000662982.2:ENST00000456953.7:ENST00000654183.2:ENST00000663540.2:ENST00000651115.2:ENST00000660885.2:ENST00000662213.1:ENST00000665233.2:ENST00000666268.2:ENST00000665735.1:ENST00000660558.2:ENST00000691280.1:ENST00000658488.2:ENST00000688336.1:ENST00000668054.2:ENST00000690441.1:ENST00000655520.2:ENST00000687490.1:ENST00000664626.1:ENST00000658051.1:ENST00000668042.1:ENST00000686971.1:ENST00000663187.1:ENST00000657868.1:ENST00000663534.1:ENST00000689917.1:ENST00000664073.2:ENST00000653697.1:ENST00000656320.1:ENST00000686814.1:ENST00000417578.7:ENST00000654853.1:ENST00000665440.1:ENST00000436764.7:ENST00000668482.2:ENST00000671249.1:ENST00000655692.1:ENST00000693250.1:ENST00000691368.1:ENST00000693227.1:ENST00000690361.1:ENST00000670051.1:ENST00000667912.1:ENST00000693665.1:ENST00000665181.1:ENST00000687532.1:ENST00000691386.1:ENST00000693684.1:ENST00000666331.1:ENST00000669480.1:ENST00000658905.1:ENST00000661252.1:ENST00000669137.1:ENST00000688133.1:ENST00000689414.1:ENST00000691314.1:ENST00000669033.1:ENST00000686145.1:ENST00000653938.1:ENST00000663784.1:ENST00000665003.1:ENST00000656023.1:ENST00000692262.1:ENST00000414142.5:ENST00000670958.1:ENST00000657216.2:ENST00000664636.1:ENST00000657843.1:ENST00000423536.6:ENST00000666419.1:ENST00000413755.5	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	1	60	2	3.43305	4.30893	5.18481	0.00159668	6.21872e-4	0.0364566	0.0223951
chr11	47732272	47732360	4951050	0	-	0.397727	(0.378,0.408]	chr11	464395	6	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	FNBP4	ENSG00000109920.13	ENST00000263773.10:ENST00000525792.5:ENST00000528388.5:ENST00000524696.1:ENST00000534003.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	90	2	2.73003	4.308135	5.88624	8.35208e-4	1.19481e-4	0.0263691	0.00988798
chr14	63499333	63499433	5907464	0	-	0.29	(0.28,0.32]	chr14	561132	451	INTRON	INTRON	PPP2R5E	ENSG00000154001.14	ENST00000337537.8:ENST00000422769.6:ENST00000555899.1:ENST00000556484.5:ENST00000553266.5:ENST00000556878.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	30	2	3.88145	4.308095	4.73474	0.0561985	0.0162835	0.18407	0.101453
chr17	72844006	72844105	6832460	0	-	0.313131	(0.28,0.32]	chr17	675171	55	INTRON	INTRON	SLC39A11	ENSG00000133195.12	ENST00000255559.8:ENST00000542342.6:ENST00000582769.5:ENST00000581581.1:ENST00000579319.1:ENST00000583715.5:ENST00000579491.1:ENST00000584129.1:ENST00000579732.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	30	2	3.88145	4.308095	4.73474	0.0561985	0.0162835	0.18407	0.101453
chr22	17643579	17643679	7475068	0	+	0.31	(0.28,0.32]	chr22	762152	43	INTRON	INTRON	BCL2L13	ENSG00000099968.18	ENST00000399781.5:ENST00000399782.5:ENST00000337612.9:ENST00000418951.6:ENST00000538149.5:ENST00000543133.5:ENST00000611738.4:ENST00000616863.4:ENST00000618481.4:ENST00000498133.5:ENST00000317582.10:ENST00000464649.1:ENST00000493680.5:ENST00000355028.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	30	2	3.88145	4.308095	4.73474	0.0561985	0.0162835	0.18407	0.101453
chr9	130203076	130203176	4212149	0	+	0.3	(0.28,0.32]	chr9	386126	17	INTRON	INTRON	NCS1	ENSG00000107130.10	ENST00000372398.6:ENST00000493042.1:ENST00000630865.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	30	2	3.88145	4.308095	4.73474	0.0561985	0.0162835	0.18407	0.101453
chr2	177397377	177397477	926128	0	+	0.27	[0,0.28]	chr2	101782	13	INTRON	INTRON	AGPS	ENSG00000018510.18	ENST00000679459.1:ENST00000637633.2:ENST00000680770.1:ENST00000680705.1:ENST00000681752.1:ENST00000460342.2:ENST00000681565.1:ENST00000680893.1:ENST00000681032.1:ENST00000679421.1:ENST00000680910.1:ENST00000680677.1:ENST00000409888.1:ENST00000642466.2:ENST00000264167.11:ENST00000680155.1:ENST00000679478.1:ENST00000681449.1:ENST00000681891.1:ENST00000681028.1:ENST00000679639.1:ENST00000680028.1:ENST00000679994.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	68	2	3.18138	4.30783	5.43428	0.00487606	0.00400834	0.0640618	0.0551303
chr20	47310504	47310604	7349048	0	-	0.56	(0.515,0.57]	chr20	749341	3	SS3_PROX	SS3_PROX:INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000468376.2:ENST00000435836.5:ENST00000446894.5:ENST00000441977.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	59	2	2.56306	4.30759	6.05212	0.0247751	1.09838e-5	0.131869	0.00262193
chr16	84746073	84746173	6410374	0	+	0.27	[0,0.28]	chr16	615302	4	SS5_PROX	SS5_PROX:INTRON	USP10	ENSG00000103194.16	ENST00000540269.6:ENST00000563892.5:ENST00000219473.12:ENST00000570191.5:ENST00000563048.5:ENST00000569038.5:ENST00000570053.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	75	2	2.86008	4.307515	5.75495	0.0177015	3.2999e-4	0.105304	0.0161352
chr17	40166934	40167007	6609397	0	+	0.342466	(0.32,0.35]	chr17	643697	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CASC3	ENSG00000108349.17	ENST00000418132.7:ENST00000264645.12:ENST00000577605.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	143	2	3.8032	4.30733	4.81146	4.69031e-4	8.53556e-7	0.0200452	5.21328e-4
chr17	17683799	17683895	6565517	0	+	0.489583	(0.476,0.515]	chr17	638201	2	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	RAI1	ENSG00000108557.20	ENST00000353383.6:ENST00000489697.1:ENST00000471135.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	59	2	3.37632	4.307005	5.23769	0.00195267	5.17244e-4	0.0400465	0.0203753
chr7	44799480	44799553	3315624	0	+	0.342466	(0.32,0.35]	chr7	308127	1	EXON_MRNA	EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PPIA	ENSG00000196262.15	ENST00000451562.5:ENST00000481437.5:ENST00000479021.1:ENST00000468812.6:ENST00000676977.1:ENST00000677107.1:ENST00000355968.10:ENST00000489459.5:ENST00000415933.5:ENST00000620047.5:ENST00000678643.1:ENST00000677521.1:ENST00000678789.1:ENST00000678165.1:ENST00000677022.1:ENST00000678805.1:ENST00000494484.1:ENST00000480603.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	61	2	3.0247	4.306965	5.58923	0.00671684	8.12357e-4	0.0738715	0.0263656
chr20	36771193	36771270	7337856	0	-	0.311688	(0.28,0.32]	chr20	747687	1	EXON_MRNA	EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DSN1	ENSG00000149636.16	ENST00000426836.5:ENST00000373734.8:ENST00000480153.5:ENST00000473615.5:ENST00000373750.9:ENST00000448110.6:ENST00000373740.7:ENST00000447406.1:ENST00000438549.5:ENST00000492703.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	85	2	2.70831	4.306865	5.90542	0.00378444	3.92169e-4	0.0562562	0.0184748
chr16	235157	235257	6271615	0	+	0.7	(0.57,1]	chr16	598368	3	SS5_PROX	SS5_PROX:INTRON	FAM234A	ENSG00000167930.17	ENST00000301679.7:ENST00000666018.1:ENST00000653392.1:ENST00000659283.1:ENST00000654053.1:ENST00000419173.5:ENST00000399932.8:ENST00000426695.5:ENST00000438220.5:ENST00000447499.1:ENST00000453430.5:ENST00000449945.5:ENST00000420046.5:ENST00000301678.7:ENST00000420500.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	37	2	3.5592	4.306845	5.05449	4.21089e-4	1.79828e-4	0.0183576	0.0121697
chr5	625478	625578	2313511	0	+	0.59	(0.57,1]	chr5	223852	5	INTRON	INTRON	CEP72	ENSG00000112877.8	ENST00000264935.6	protein_coding	protein_coding	protein_coding	protein_coding	1	37	2	3.5592	4.306845	5.05449	4.21089e-4	1.79828e-4	0.0183576	0.0121697
chr3	197792738	197792838	1597732	0	+	0.58	(0.57,1]	chr3	165560	8	INTRON	INTRON	LRCH3	ENSG00000186001.14	ENST00000443727.1:ENST00000438796.6:ENST00000428136.2:ENST00000425562.7:ENST00000441090.6:ENST00000414675.6:ENST00000334859.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	37	2	3.48337	4.3067899999999995	5.13021	6.20854e-4	1.21664e-4	0.0223951	0.00992813
chr1	171592630	171592727	254329	0	+	0.381443	(0.378,0.408]	chr1	30290	9	UTR3	UTR3:EXON_MRNA	PRRC2C	ENSG00000117523.18	ENST00000647382.2:ENST00000367742.7:ENST00000338920.8:ENST00000426496.6:ENST00000495585.1:ENST00000644916.1	protein_coding	protein_coding	protein_coding	protein_coding	6	258	2	3.1697	4.306705	5.44371	9.08123e-6	2.69455e-8	0.00216583	5.66733e-5
chr7	36438305	36438404	3307509	0	+	0.393939	(0.378,0.408]	chr7	307191	96	INTRON	INTRON	ANLN	ENSG00000011426.11	ENST00000396068.6:ENST00000265748.7:ENST00000428612.5:ENST00000457743.1	protein_coding	protein_coding	protein_coding	protein_coding	2	75	2	2.82967	4.3067	5.78373	0.00189968	1.89312e-4	0.0402736	0.012565
chr7	10616353	10616452	3482943	0	-	0.30303	(0.28,0.32]	chr7	325772	544	INTRON	INTRON	MGC4859	ENSG00000283117.1	ENST00000634803.1	lncRNA	lncRNA	lncRNA	lncRNA	1	63	2	3.26551	4.30658	5.34765	0.0030714	0.00287138	0.0509893	0.0474836
chr5	176964954	176965054	2776510	0	-	0.4	(0.378,0.408]	chr5	261550	64	INTRON	INTRON	UIMC1	ENSG00000087206.17	ENST00000377227.8:ENST00000511320.6:ENST00000506128.5:ENST00000512031.5:ENST00000510698.2:ENST00000503273.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	125	2	4.13202	4.3064800000000005	4.48094	7.35047e-5	4.61323e-6	0.00767614	0.00144728
chr9	131734705	131734805	4363856	0	-	0.35	(0.32,0.35]	chr9	401281	251	INTRON	INTRON	RAPGEF1	ENSG00000107263.19	ENST00000372195.5:ENST00000372189.7:ENST00000683357.1:ENST00000438647.3	protein_coding	protein_coding	protein_coding	protein_coding	1	60	2	3.3273	4.3059	5.2845	0.00240071	0.00218894	0.0440612	0.0435144
chr10	50388595	50388695	4618331	0	-	0.36	(0.35,0.378]	chr10	425422	439	INTRON	INTRON	SGMS1	ENSG00000198964.14	ENST00000429490.5:ENST00000361781.7:ENST00000619438.4:ENST00000492601.2:ENST00000609445.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	133	2	4.19854	4.30579	4.41304	2.91516e-5	1.98419e-5	0.00428471	0.00360253
chr1	229517978	229518078	653349	0	-	0.25	[0,0.28]	chr1	77417	15	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ABCB10	ENSG00000135776.5	ENST00000344517.5:ENST00000498158.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	68	2	3.2621000000000002	4.3055	5.3489	0.00514751	0.00367113	0.062965	0.056059199999999997
chr2	190897566	190897666	959650	0	+	0.36	(0.35,0.378]	chr2	104167	11	INTRON	INTRON	GLS	ENSG00000115419.13	ENST00000320717.8:ENST00000338435.8:ENST00000469774.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	63	2	3.2953	4.305429999999999	5.31556	0.0031465	4.97087e-4	0.0500431	0.0201536
chr14	81495437	81495537	5937947	0	-	0.47	(0.44,0.476]	chr14	564313	3	SS3_PROX	SS3_PROX:INTRON	SEL1L	ENSG00000071537.14	ENST00000336735.9	protein_coding	protein_coding	protein_coding	protein_coding	1	55	2	3.41176	4.30528	5.1988	0.00151532	0.00130987	0.0352794	0.0333932
chr7	10577570	10577670	3482555	0	-	0.3	(0.28,0.32]	chr7	325772	156	INTRON	INTRON	MGC4859	ENSG00000283117.1	ENST00000634803.1	lncRNA	lncRNA	lncRNA	lncRNA	1	63	2	3.30893	4.30523	5.30153	0.00332518	0.00260504	0.0512081	0.0470772
chr14	49801427	49801519	5886724	0	-	0.48913	(0.476,0.515]	chr14	558687	9	EXON_MRNA	EXON_MRNA:INTRON	NEMF	ENSG00000165525.18	ENST00000298310.10:ENST00000556074.5:ENST00000556925.5:ENST00000555970.5:ENST00000555411.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	89	2	2.45107	4.305115	6.15916	0.00301722	1.89343e-5	0.0507519	0.00354138
chr2	241316675	241316755	1053609	0	+	0.4875	(0.476,0.515]	chr2	112182	1	SS5_PROX	SS5_PROX:INTRON	SEPTIN2	ENSG00000168385.18	ENST00000391973.6:ENST00000428282.5:ENST00000492978.5:ENST00000360051.7:ENST00000407017.5:ENST00000445030.5:ENST00000428524.5:ENST00000469434.5:ENST00000616972.4:ENST00000495463.5:ENST00000482304.5:ENST00000475474.5:ENST00000401990.5:ENST00000469175.5:ENST00000407971.5:ENST00000461048.5:ENST00000457335.5:ENST00000436795.5:ENST00000494824.5:ENST00000411484.5:ENST00000462147.5:ENST00000434955.5:ENST00000466211.5:ENST00000391971.7:ENST00000402092.6:ENST00000484740.1:ENST00000473479.5:ENST00000464128.5:ENST00000441533.5:ENST00000467971.5:ENST00000425899.5:ENST00000443492.5:ENST00000437066.5:ENST00000484648.1:ENST00000429791.5:ENST00000420786.5:ENST00000475823.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	55	2	3.29939	4.304985	5.31058	0.00211868	9.15544e-4	0.0425644	0.0278396
chr2	169946187	169946287	909349	0	+	0.28	[0,0.28]	chr2	100328	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	UBR3	ENSG00000144357.18	ENST00000272793.11:ENST00000430321.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	75	2	2.81922	4.30457	5.78992	0.0197411	2.85302e-4	0.109608	0.0150568
chr11	3785735	3785834	4895057	0	-	0.313131	(0.28,0.32]	chr11	458931	32	INTRON	INTRON	NUP98	ENSG00000110713.17	ENST00000359171.8:ENST00000324932.12:ENST00000650171.1:ENST00000355260.7:ENST00000397004.8:ENST00000397007.8:ENST00000532475.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	64	2	3.50836	4.304525	5.10069	0.00610574	0.00117393	0.0676501	0.0316446
chr9	100042432	100042532	4308078	0	-	0.38	(0.378,0.408]	chr9	395794	157	INTRON	INTRON	ERP44	ENSG00000023318.9	ENST00000262455.7:ENST00000685319.1:ENST00000691188.1:ENST00000687025.1:ENST00000687093.1:ENST00000690739.1:ENST00000687017.1:ENST00000690317.1:ENST00000691823.1:ENST00000686275.1:ENST00000689406.1:ENST00000684842.1:ENST00000688230.1:ENST00000685432.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	57	2	3.60429	4.3044400000000005	5.00459	0.00371142	5.71664e-4	0.0535094	0.0217398
chr1	40731162	40731262	82760	0	+	0.42	(0.408,0.44]	chr1	10736	70	INTRON	INTRON	NFYC	ENSG00000066136.21	ENST00000467203.5:ENST00000424419.6:ENST00000427410.6:ENST00000447388.8:ENST00000425457.6:ENST00000453631.5:ENST00000456393.6:ENST00000372654.5:ENST00000534399.5:ENST00000372653.5:ENST00000372669.8:ENST00000372652.5:ENST00000372651.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	55	2	3.36378	4.3043949999999995	5.24501	0.0016048	0.00137378	0.0367961	0.0336718
chr7	77709236	77709336	3343197	0	+	0.42	(0.408,0.44]	chr7	311432	115	INTRON	INTRON	RSBN1L	ENSG00000187257.16	ENST00000334955.13:ENST00000445288.5	protein_coding	protein_coding	protein_coding	protein_coding	1	55	2	3.31257	4.304345	5.29612	0.00198621	0.00113523	0.0411469	0.0307488
chr1	93215752	93215848	163535	0	+	0.333333	(0.32,0.35]	chr1	17723	4	INTRON	INTRON	CCDC18	ENSG00000122483.18	ENST00000343253.11:ENST00000401026.7:ENST00000690592.1:ENST00000370276.6:ENST00000690025.1:ENST00000481180.6:ENST00000692873.1:ENST00000455267.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	29	2	3.91486	4.30433	4.6938	0.0450361	0.0137794	0.163255	0.0949306
chr3	49761607	49761707	1694634	0	-	0.33	(0.32,0.35]	chr3	173818	128	INTRON	INTRON	IP6K1	ENSG00000176095.12	ENST00000321599.9:ENST00000395238.5:ENST00000613416.4:ENST00000468463.5:ENST00000460540.1:ENST00000498149.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	29	2	3.91486	4.30433	4.6938	0.0450361	0.0137794	0.163255	0.0949306
chr8	90004693	90004791	3791789	0	+	0.346939	(0.32,0.35]	chr8	351683	28	INTRON	INTRON	DECR1	ENSG00000104325.7	ENST00000519328.5:ENST00000517314.5:ENST00000521603.5:ENST00000523447.5:ENST00000517597.5:ENST00000519410.5:ENST00000220764.7:ENST00000522161.5:ENST00000519007.5:ENST00000520859.5:ENST00000521668.1:ENST00000518725.5:ENST00000517761.5:ENST00000520227.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	29	2	3.91486	4.30433	4.6938	0.0450361	0.0137794	0.163255	0.0949306
chrX	136976921	136977021	7728147	0	+	0.33	(0.32,0.35]	chrX	790798	131	INTRON	INTRON	TM9SF5P	ENSG00000234062.9	ENST00000650669.2:ENST00000687469.1:ENST00000431464.6:ENST00000685550.1:ENST00000685929.1:ENST00000424306.5:ENST00000687978.1:ENST00000688713.1:ENST00000693626.1:ENST00000686432.1:ENST00000693698.1:ENST00000426943.4	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	29	2	3.91486	4.30433	4.6938	0.0450361	0.0137794	0.163255	0.0949306
chr17	5417814	5417914	6714391	0	-	0.53	(0.515,0.57]	chr17	658221	4	SS5_PROX	SS5_PROX:INTRON	NUP88	ENSG00000108559.12	ENST00000573584.6:ENST00000225696.8:ENST00000574867.5:ENST00000572809.1:ENST00000572290.1:ENST00000572019.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	53	2	3.35609	4.30396	5.25183	0.00174131	2.6074e-4	0.0375363	0.014326
chr1	100427488	100427587	173381	0	+	0.40404	(0.378,0.408]	chr1	18830	28	INTRON	INTRON	CDC14A	ENSG00000079335.20	ENST00000646665.1:ENST00000644844.1:ENST00000635056.2:ENST00000647005.1:ENST00000647203.1:ENST00000644676.1:ENST00000361544.11:ENST00000370124.8:ENST00000336454.5:ENST00000644813.1:ENST00000455467.6:ENST00000646563.1:ENST00000469387.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	57	2	3.05393	4.303905	5.55388	0.00551532	5.01023e-4	0.0672816	0.0206993
chr2	108544470	108544569	845946	0	+	0.383838	(0.378,0.408]	chr2	94661	95	INTRON	INTRON	LIMS1	ENSG00000169756.17	ENST00000695516.1:ENST00000544547.6:ENST00000695517.1	protein_coding	protein_coding	protein_coding	protein_coding	1	57	2	3.05393	4.303905	5.55388	0.00551532	5.01023e-4	0.0672816	0.0206993
chr1	167942533	167942632	248547	0	+	0.282828	(0.28,0.32]	chr1	29536	49	INTRON	INTRON	DCAF6	ENSG00000143164.16	ENST00000450548.5:ENST00000470919.5:ENST00000432587.6:ENST00000367843.7:ENST00000470721.5:ENST00000367840.4:ENST00000312263.10:ENST00000455334.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	86	2	3.0891	4.30389	5.51868	0.00162747	7.51507e-4	0.0367966	0.0251578
chr4	15605434	15605530	2114353	0	-	0.322917	(0.32,0.35]	chr4	208813	12	UTR3	UTR3:EXON_MRNA	FBXL5	ENSG00000118564.15	ENST00000341285.8:ENST00000412094.6:ENST00000511441.5:ENST00000513163.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	60	2	3.3721	4.30365	5.2352	0.0028268	0.00182912	0.0472361	0.0396683
chr9	93551290	93551390	4159053	0	+	0.31	(0.28,0.32]	chr9	379192	2	INTRON	INTRON	FAM120A	ENSG00000048828.17	ENST00000277165.11:ENST00000427765.1	protein_coding	protein_coding	protein_coding	protein_coding	1	69	2	3.16101	4.30342	5.44583	0.0061861	5.8721e-4	0.0677395	0.0220073
chr2	167880563	167880663	1258607	0	-	0.39	(0.378,0.408]	chr2	133334	102	INTRON	INTRON	B3GALT1-AS1	ENSG00000235335.3	ENST00000430546.2:ENST00000657553.1:ENST00000670221.1:ENST00000436982.2	lncRNA	lncRNA	lncRNA	lncRNA	5	114	2	2.39689	4.3033850000000005	6.20988	9.29812e-4	2.51359e-5	0.0278746	0.00413384
chr1	33027049	33027149	416759	0	-	0.49	(0.476,0.515]	chr1	50351	21	INTRON	INTRON	AK2	ENSG00000004455.18	ENST00000373449.7:ENST00000672715.1:ENST00000695598.1:ENST00000550338.6:ENST00000695599.1:ENST00000354858.11:ENST00000695600.1:ENST00000695601.1:ENST00000491241.2:ENST00000695602.1:ENST00000469238.2:ENST00000695603.1:ENST00000695604.1:ENST00000672308.1:ENST00000548033.5:ENST00000467905.5:ENST00000480134.5:ENST00000695605.1:ENST00000673291.1:ENST00000487289.1:ENST00000548559.1:ENST00000551979.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	55	2	3.40003	4.303240000000001	5.20645	0.00139193	0.00136049	0.0341261	0.0336321
chr10	47540977	47541076	4609355	0	-	0.343434	(0.32,0.35]	chr10	424649	4	INTRON	INTRON	ENSG00000254929:BMS1P2	ENSG00000254929.6:ENSG00000251079.6	ENST00000605970.5:ENST00000431840.2:ENST00000532854.5:ENST00000450360.2	lncRNA	lncRNA	lncRNA:transcribed_unprocessed_pseudogene	lncRNA:processed_transcript:transcribed_unprocessed_pseudogene	0	30	2	3.77344	4.303155	4.83287	0.0596635	0.0095071	0.189982	0.0817766
chr9	124389122	124389222	4346391	0	-	0.35	(0.32,0.35]	chr9	399165	41	INTRON	INTRON	PSMB7	ENSG00000136930.13	ENST00000259457.8:ENST00000498485.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	30	2	3.77344	4.303155	4.83287	0.0596635	0.0095071	0.189982	0.0817766
chr12	127160903	127161003	5447415	0	-	0.4	(0.378,0.408]	chr12	521461	3	SS5_PROX	SS5_PROX:INTRON	ENSG00000287339	ENSG00000287339.1	ENST00000671545.1	lncRNA	lncRNA	lncRNA	lncRNA	1	60	2	2.78705	4.30288	5.81871	0.0135539	1.62088e-4	0.101363	0.0116382
chr11	939941	940040	4721225	0	+	0.414141	(0.408,0.44]	chr11	436625	60	INTRON	INTRON	AP2A2	ENSG00000183020.15	ENST00000529818.6:ENST00000332231.9:ENST00000448903.7:ENST00000534328.6:ENST00000525796.5:ENST00000529858.6:ENST00000693238.1:ENST00000687890.1:ENST00000687792.1:ENST00000528815.5:ENST00000528195.6:ENST00000531548.6:ENST00000534485.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	59	2	3.10641	4.302875	5.49934	0.00555646	1.5076e-4	0.0648867	0.0106137
chr3	186951031	186951131	1586379	0	+	0.41	(0.408,0.44]	chr3	164326	17	INTRON	INTRON	ST6GAL1	ENSG00000073849.16	ENST00000676786.1:ENST00000463542.1:ENST00000169298.8:ENST00000457772.6:ENST00000455441.5:ENST00000427315.5:ENST00000677292.1:ENST00000468614.1:ENST00000458216.5:ENST00000430309.5:ENST00000417392.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	59	2	3.10641	4.302875	5.49934	0.00555646	1.5076e-4	0.0648867	0.0106137
chr12	96294399	96294498	5394208	0	-	0.515152	(0.476,0.515]	chr12	514397	48	INTRON	INTRON	CDK17	ENSG00000059758.8	ENST00000261211.8:ENST00000543119.6:ENST00000542666.5:ENST00000550971.5:ENST00000551484.1:ENST00000553042.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	88	2	2.72228	4.302825	5.88337	8.52725e-4	7.59355e-5	0.0264928	0.00777694
chr11	111871482	111871581	5042791	0	-	0.565657	(0.515,0.57]	chr11	475004	1	UTR5	UTR5:EXON_MRNA	ALG9	ENSG00000086848.15	ENST00000616540.5:ENST00000614444.4:ENST00000619129.4:ENST00000613181.4:ENST00000618252.1:ENST00000612489.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	51	2	3.62821	4.302715	4.97722	0.00168681	4.12866e-4	0.0370386	0.0181365
chr8	22174785	22174880	3712112	0	+	0.515789	(0.515,0.57]	chr8	344641	7	INTRON	INTRON	BMP1	ENSG00000168487.20	ENST00000354870.5:ENST00000397814.7:ENST00000520970.5:ENST00000518913.5:ENST00000520626.6:ENST00000520982.5:ENST00000518656.5:ENST00000306385.10:ENST00000306349.13:ENST00000471755.5:ENST00000483364.5:ENST00000521385.5:ENST00000521521.5:ENST00000523849.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	51	2	3.62821	4.302715	4.97722	0.00168681	4.12866e-4	0.0370386	0.0181365
chr8	129544738	129544838	4060730	0	-	0.42	(0.408,0.44]	chr8	369648	342	INTRON	INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1:ENST00000676273.1:ENST00000667643.1:ENST00000668791.1:ENST00000663716.1:ENST00000663572.1:ENST00000676148.1:ENST00000667962.1:ENST00000674877.1:ENST00000675316.1:ENST00000674656.1:ENST00000446592.7:ENST00000667341.1:ENST00000675186.1:ENST00000652971.1:ENST00000661447.1:ENST00000674863.1:ENST00000675498.1:ENST00000675527.1:ENST00000676108.1:ENST00000657647.1:ENST00000675589.1:ENST00000675913.1:ENST00000675109.1:ENST00000671632.1:ENST00000671311.1:ENST00000676099.1:ENST00000660652.1:ENST00000675522.1:ENST00000675183.1:ENST00000658861.1:ENST00000663991.1:ENST00000675044.1:ENST00000675435.1:ENST00000674639.1:ENST00000676069.1:ENST00000675532.1:ENST00000674762.1:ENST00000523151.6:ENST00000675948.1:ENST00000665364.1:ENST00000657251.1:ENST00000675166.1:ENST00000674883.1:ENST00000675867.1:ENST00000674580.1:ENST00000675393.1:ENST00000520048.1:ENST00000674906.1:ENST00000676030.1:ENST00000670588.1:ENST00000675072.1:ENST00000664936.1:ENST00000652914.1:ENST00000657069.1	lncRNA	lncRNA	lncRNA	lncRNA	3	98	2	2.77154	4.30259	5.83364	9.14134e-4	2.74563e-5	0.0278396	0.00414215
chr1	1493224	1493321	1797	0	+	0.42268	(0.408,0.44]	chr1	429	22	INTRON	INTRON	ATAD3B	ENSG00000160072.20	ENST00000673477.1:ENST00000308647.8:ENST00000472194.6:ENST00000485748.5:ENST00000474481.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	55	2	3.25948	4.30248	5.34548	0.00246454	9.40657e-4	0.0459102	0.0280776
chr4	99013038	99013137	2002883	0	+	0.313131	(0.28,0.32]	chr4	199803	68	INTRON	INTRON	METAP1	ENSG00000164024.12	ENST00000510209.5:ENST00000296411.11:ENST00000507537.5:ENST00000506238.5:ENST00000503247.5:ENST00000510107.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	63	2	3.35108	4.30248	5.25388	0.00385849	0.00221345	0.0542786	0.0435144
chr16	21625615	21625714	6319207	0	+	0.313131	(0.28,0.32]	chr16	604937	1	INTRON	INTRON	METTL9	ENSG00000197006.15	ENST00000567404.5:ENST00000396014.8:ENST00000358154.8:ENST00000568826.1	protein_coding	protein_coding	protein_coding	protein_coding	1	65	2	3.616	4.30236	4.98872	0.00838468	7.42427e-4	0.0774402	0.024913
chr7	131473259	131473358	3417919	0	+	0.232323	[0,0.28]	chr7	319284	11	INTRON	INTRON	MKLN1	ENSG00000128585.18	ENST00000421797.6:ENST00000352689.11:ENST00000494785.5:ENST00000458153.5:ENST00000498778.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	68	2	3.05114	4.302350000000001	5.55356	0.0075493	0.00278704	0.0773151	0.0469265
chr7	152303168	152303268	3679954	0	-	0.26	[0,0.28]	chr7	341623	164	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000684262.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	68	2	3.05114	4.302350000000001	5.55356	0.0075493	0.00278704	0.0773151	0.0469265
chr1	50786101	50786201	450511	0	-	0.38	(0.378,0.408]	chr1	54249	410	INTRON	INTRON	FAF1	ENSG00000185104.21	ENST00000396153.7:ENST00000487898.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	56	2	3.4275	4.301885	5.17627	0.00208234	0.00126053	0.0411801	0.03295
chrX	123896533	123896632	7716555	0	+	0.383838	(0.378,0.408]	chrX	789429	34	INTRON	INTRON	XIAP	ENSG00000101966.13	ENST00000481776.5:ENST00000434753.7:ENST00000497906.5:ENST00000468691.5:ENST00000371199.8:ENST00000497640.1:ENST00000355640.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	56	2	3.4275	4.301885	5.17627	0.00208234	0.00126053	0.0411801	0.03295
chr12	28254761	28254861	5100915	0	+	0.45	(0.44,0.476]	chr12	481914	282	INTRON	INTRON	CCDC91	ENSG00000123106.11	ENST00000540794.5:ENST00000538586.5:ENST00000536154.5:ENST00000535520.5:ENST00000539107.5:ENST00000544649.5:ENST00000545336.5:ENST00000536442.6:ENST00000544780.5:ENST00000543534.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	55	2	3.45957	4.3016749999999995	5.14378	0.00184943	0.00106385	0.0388609	0.0300133
chr17	2301656	2301754	6704714	0	-	0.540816	(0.515,0.57]	chr17	656377	6	INTRON	INTRON	SMG6	ENSG00000070366.14	ENST00000263073.11	protein_coding	protein_coding	protein_coding	protein_coding	1	54	2	3.53844	4.301515	5.06459	7.92613e-4	6.03964e-4	0.0259663	0.0223465
chr10	72623212	72623312	4646903	0	-	0.45	(0.44,0.476]	chr10	427462	561	INTRON	INTRON	MICU1	ENSG00000107745.20	ENST00000361114.10:ENST00000642044.1:ENST00000635239.1:ENST00000604238.2:ENST00000603011.5:ENST00000604025.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	55	2	3.2029	4.30145	5.4	0.00308681	7.02611e-4	0.0510391	0.024224
chr1	220040669	220040769	639135	0	-	0.53	(0.515,0.57]	chr1	75332	4	SS3_PROX	SS3_PROX:INTRON	EPRS1	ENSG00000136628.18	ENST00000366923.8:ENST00000609181.5:ENST00000477030.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	25	2	4.20381	4.301405	4.399	0.0189208	0.00708863	0.108861	0.0754923
chr10	101802067	101802164	4680809	0	-	0.515464	(0.515,0.57]	chr10	431988	13	INTRON	INTRON	OGA	ENSG00000198408.14	ENST00000439817.5:ENST00000361464.8:ENST00000357797.9:ENST00000370094.7	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	4.20381	4.301405	4.399	0.0189208	0.00708863	0.108861	0.0754923
chr12	50445119	50445219	5136788	0	+	0.53	(0.515,0.57]	chr12	484418	31	INTRON	INTRON	LARP4	ENSG00000161813.23	ENST00000293618.12:ENST00000429001.7:ENST00000398473.7:ENST00000522085.5:ENST00000518444.5:ENST00000518561.5:ENST00000347328.9:ENST00000520064.2:ENST00000521120.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	25	2	4.20381	4.301405	4.399	0.0189208	0.00708863	0.108861	0.0754923
chr15	50590734	50590831	6172294	0	-	0.546392	(0.515,0.57]	chr15	588252	7	INTRON	INTRON	TRPM7	ENSG00000092439.16	ENST00000646667.1:ENST00000560955.5:ENST00000645282.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	25	2	4.20381	4.301405	4.399	0.0189208	0.00708863	0.108861	0.0754923
chr16	74604758	74604858	6525309	0	-	0.55	(0.515,0.57]	chr16	631842	416	INTRON	INTRON	GLG1	ENSG00000090863.12	ENST00000205061.9:ENST00000422840.7:ENST00000447066.6:ENST00000562090.5:ENST00000567951.5:ENST00000627032.2:ENST00000565260.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	25	2	4.20381	4.301405	4.399	0.0189208	0.00708863	0.108861	0.0754923
chr19	49667857	49667956	7090339	0	+	0.535354	(0.515,0.57]	chr19	710120	3	INTRON	INTRON	BCL2L12	ENSG00000126453.10	ENST00000611631.4:ENST00000614495.4:ENST00000616144.4:ENST00000619007.4:ENST00000246785.7:ENST00000441864.6:ENST00000246784.8:ENST00000594157.5:ENST00000598979.5:ENST00000600947.5:ENST00000598306.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	25	2	4.20381	4.301405	4.399	0.0189208	0.00708863	0.108861	0.0754923
chr20	41117474	41117571	7274417	0	+	0.546392	(0.515,0.57]	chr20	739313	7	INTRON	INTRON	TOP1	ENSG00000198900.7	ENST00000361337.3:ENST00000681113.1:ENST00000681058.1:ENST00000681392.1:ENST00000681884.1:ENST00000680945.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	25	2	4.20381	4.301405	4.399	0.0189208	0.00708863	0.108861	0.0754923
chr20	50524582	50524682	7286056	0	+	0.55	(0.515,0.57]	chr20	741241	136	INTRON	INTRON	PTPN1	ENSG00000196396.10	ENST00000541713.5:ENST00000371621.5	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	4.20381	4.301405	4.399	0.0189208	0.00708863	0.108861	0.0754923
chr10	110876070	110876170	4521140	0	+	0.45	(0.44,0.476]	chr10	417119	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PDCD4	ENSG00000150593.18	ENST00000393104.6:ENST00000467574.5:ENST00000483670.5:ENST00000280154.12:ENST00000444997.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	101	2	2.66103	4.30133	5.94163	4.47456e-4	6.45088e-5	0.0191768	0.00711194
chr1	12478048	12478148	30794	0	+	0.53	(0.515,0.57]	chr1	3785	124	INTRON	INTRON	VPS13D	ENSG00000048707.15	ENST00000620676.6:ENST00000613099.4:ENST00000011700.10:ENST00000646411.1:ENST00000543710.5:ENST00000645371.1:ENST00000543766.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	25	2	4.28921	4.301235	4.31326	0.0141817	0.00990051	0.0959618	0.0877296
chr1	61341569	61341669	129994	0	+	0.57	(0.515,0.57]	chr1	14807	86	INTRON	INTRON	NFIA	ENSG00000162599.17	ENST00000371191.5:ENST00000664495.1:ENST00000407417.7:ENST00000479364.1:ENST00000371189.8:ENST00000670151.1:ENST00000664149.1:ENST00000662015.1:ENST00000403491.8:ENST00000371187.7:ENST00000485903.6:ENST00000371185.6:ENST00000371184.6:ENST00000663597.1:ENST00000657234.1:ENST00000655770.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	25	2	4.28921	4.301235	4.31326	0.0141817	0.00990051	0.0959618	0.0877296
chr11	64195344	64195444	4802128	0	+	0.52	(0.515,0.57]	chr11	445265	3	SS3_PROX	SS3_PROX:INTRON	STIP1	ENSG00000168439.17	ENST00000358794.9:ENST00000305218.9:ENST00000536973.5:ENST00000538945.5:ENST00000543847.1:ENST00000540501.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	25	2	4.28921	4.301235	4.31326	0.0141817	0.00990051	0.0959618	0.0877296
chr12	101807732	101807832	5398751	0	-	0.52	(0.515,0.57]	chr12	514984	106	INTRON	INTRON	GNPTAB	ENSG00000111670.16	ENST00000299314.12:ENST00000549940.5:ENST00000647144.1:ENST00000392919.4:ENST00000549165.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	25	2	4.28921	4.301235	4.31326	0.0141817	0.00990051	0.0959618	0.0877296
chr16	1510684	1510770	6428343	0	-	0.55814	(0.515,0.57]	chr16	618028	4	UTR3	UTR3:EXON_MRNA	IFT140	ENSG00000187535.14	ENST00000426508.7:ENST00000361339.9:ENST00000397417.6:ENST00000565298.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	25	2	4.28921	4.301235	4.31326	0.0141817	0.00990051	0.0959618	0.0877296
chr16	2101657	2101755	6430974	0	-	0.55102	(0.515,0.57]	chr16	618627	2	SS5_PROX	SS5_PROX:INTRON	PKD1	ENSG00000008710.20	ENST00000262304.9:ENST00000423118.5:ENST00000487932.5:ENST00000483731.5:ENST00000415938.7:ENST00000486339.6:ENST00000567946.1:ENST00000562297.5:ENST00000496574.6:ENST00000471603.6:ENST00000480227.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	25	2	4.28921	4.301235	4.31326	0.0141817	0.00990051	0.0959618	0.0877296
chr16	14936383	14936480	6304951	0	+	0.556701	(0.515,0.57]	chr16	603199	6	INTRON	INTRON	NPIPA1	ENSG00000183426.17	ENST00000472413.5:ENST00000541836.5	protein_coding	processed_transcript	protein_coding	processed_transcript	0	25	2	4.28921	4.301235	4.31326	0.0141817	0.00990051	0.0959618	0.0877296
chr19	28695289	28695388	7168050	0	-	0.535354	(0.515,0.57]	chr19	724207	71	INTRON	INTRON	ENSG00000283403:ENSG00000283269	ENSG00000283403.1:ENSG00000283269.1	ENST00000592347.5:ENST00000636857.1	lncRNA	lncRNA	lncRNA:transcribed_unprocessed_pseudogene	lncRNA:transcribed_unprocessed_pseudogene	0	25	2	4.28921	4.301235	4.31326	0.0141817	0.00990051	0.0959618	0.0877296
chr2	24588154	24588254	710229	0	+	0.52	(0.515,0.57]	chr2	82224	32	INTRON	INTRON	NCOA1	ENSG00000084676.16	ENST00000348332.8:ENST00000496333.5:ENST00000406961.5:ENST00000405141.5:ENST00000407230.5:ENST00000483904.5:ENST00000288599.9:ENST00000395856.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	25	2	4.28921	4.301235	4.31326	0.0141817	0.00990051	0.0959618	0.0877296
chr2	177449418	177449518	926660	0	+	0.52	(0.515,0.57]	chr2	101828	34	INTRON	INTRON	AGPS	ENSG00000018510.18	ENST00000679459.1:ENST00000637633.2:ENST00000680770.1:ENST00000680705.1:ENST00000681752.1:ENST00000460342.2:ENST00000681565.1:ENST00000680893.1:ENST00000681032.1:ENST00000679421.1:ENST00000680910.1:ENST00000409888.1:ENST00000642466.2:ENST00000264167.11:ENST00000680155.1:ENST00000679478.1:ENST00000681449.1:ENST00000681891.1:ENST00000681028.1:ENST00000679639.1:ENST00000680028.1:ENST00000679994.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	25	2	4.28921	4.301235	4.31326	0.0141817	0.00990051	0.0959618	0.0877296
chr6	43536101	43536201	3096915	0	-	0.52	(0.515,0.57]	chr6	290015	17	INTRON	INTRON	XPO5	ENSG00000124571.18	ENST00000265351.12:ENST00000398835.7:ENST00000612911.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	25	2	4.28921	4.301235	4.31326	0.0141817	0.00990051	0.0959618	0.0877296
chr7	39640202	39640302	3309316	0	+	0.53	(0.515,0.57]	chr7	307358	154	INTRON	INTRON	RALA	ENSG00000006451.8	ENST00000468201.1:ENST00000005257.7:ENST00000436179.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	25	2	4.28921	4.301235	4.31326	0.0141817	0.00990051	0.0959618	0.0877296
chr8	52643510	52643610	3950380	0	-	0.52	(0.515,0.57]	chr8	362306	3	INTRON	INTRON	RB1CC1	ENSG00000023287.13	ENST00000025008.10:ENST00000435644.6:ENST00000521611.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	25	2	4.28921	4.301235	4.31326	0.0141817	0.00990051	0.0959618	0.0877296
chr2	24817317	24817401	712336	0	+	0.416667	(0.408,0.44]	chr2	82384	1	SS3_PROX	SS3_PROX:INTRON	CENPO	ENSG00000138092.11	ENST00000473706.5:ENST00000380834.7:ENST00000260662.2:ENST00000498362.1:ENST00000464156.5:ENST00000395845.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	59	2	3.20034	4.30121	5.40208	0.00398025	2.37882e-4	0.0549214	0.0136195
chr16	8031823	8031923	6440827	0	-	0.43	(0.408,0.44]	chr16	620351	242	INTRON	INTRON	ENSG00000260289	ENSG00000260289.2	ENST00000670665.1:ENST00000654046.1:ENST00000567103.2	lncRNA	lncRNA	lncRNA	lncRNA	2	84	2	3.20009	4.301085	5.40208	4.59843e-4	2.37882e-4	0.01978	0.0136195
chr7	152037913	152038013	3449633	0	+	0.53	(0.515,0.57]	chr7	322435	98	INTRON	INTRON	GALNT11	ENSG00000178234.13	ENST00000430044.7:ENST00000482812.1:ENST00000431668.1:ENST00000446096.5:ENST00000447778.5:ENST00000423337.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	68	2	2.68132	4.30063	5.91994	0.00324198	2.28427e-5	0.0524329	0.00389868
chr1	226174595	226174695	646937	0	-	0.54	(0.515,0.57]	chr1	76667	82	INTRON	INTRON	ACBD3	ENSG00000182827.9	ENST00000366812.6	protein_coding	protein_coding	protein_coding	protein_coding	2	71	2	3.49655	4.300515	5.10448	0.0010345	4.90491e-5	0.029231300000000002	0.00572797
chr1	185313989	185314087	603685	0	-	0.387755	(0.378,0.408]	chr1	71930	23	INTRON	INTRON	IVNS1ABP	ENSG00000116679.16	ENST00000367498.8:ENST00000459929.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	61	2	3.93712	4.30025	4.66338	0.0103469	1.09377e-4	0.0850389	0.00884858
chr9	128316396	128316481	4358353	0	-	0.494118	(0.476,0.515]	chr9	400477	1	INTRON	INTRON	TRUB2	ENSG00000167112.10	ENST00000372890.6:ENST00000460320.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	80	2	3.05958	4.300095	5.54061	8.34691e-4	1.30462e-4	0.0266389	0.00983066
chr6	31407171	31407270	2842661	0	+	0.343434	(0.32,0.35]	chr6	267458	31	INTRON	INTRON	MICA	ENSG00000204520.14	ENST00000616296.4:ENST00000674069.1:ENST00000673996.1:ENST00000673647.1:ENST00000449934.7:ENST00000421350.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	60	2	3.41554	4.2998449999999995	5.18415	0.00333629	0.00153152	0.0512081	0.0361484
chr1	58676338	58676425	467589	0	-	0.494253	(0.476,0.515]	chr1	56453	4	INTRON	INTRON	MYSM1	ENSG00000162601.11	ENST00000655340.1:ENST00000493821.6:ENST00000472487.6:ENST00000665648.1:ENST00000659812.1:ENST00000659108.1:ENST00000401044.7:ENST00000660611.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	255	2	4.2722	4.29974	4.32728	6.45235e-7	3.50561e-8	4.74549e-4	7.47714e-5
chr5	36877876	36877975	2338440	0	+	0.383838	(0.378,0.408]	chr5	225947	3	INTRON	INTRON	NIPBL	ENSG00000164190.19	ENST00000282516.13:ENST00000448238.2:ENST00000652901.1	protein_coding	protein_coding	protein_coding	protein_coding	2	75	2	2.74646	4.299665	5.85287	0.00271684	1.39037e-4	0.0481064	0.0107072
chr1	230164519	230164619	335052	0	+	0.51	(0.476,0.515]	chr1	38930	726	INTRON	INTRON	GALNT2	ENSG00000143641.10	ENST00000494106.1:ENST00000366672.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	55	2	3.44784	4.299635	5.15143	0.00166579	0.00113238	0.0369207	0.0308465
chr10	5894088	5894187	4385216	0	+	0.515152	(0.476,0.515]	chr10	404622	26	INTRON	INTRON	FBH1	ENSG00000134452.20	ENST00000397269.7:ENST00000362091.9:ENST00000470089.5:ENST00000462507.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	55	2	3.19119	4.29944	5.40769	0.00325748	6.23078e-4	0.0524329	0.0229151
chr7	117201930	117202029	3388503	0	+	0.515152	(0.476,0.515]	chr7	317270	24	INTRON	INTRON	ST7	ENSG00000004866.22	ENST00000393446.6:ENST00000265437.9:ENST00000393451.7:ENST00000393449.5:ENST00000443979.5:ENST00000323984.8:ENST00000446490.5:ENST00000422922.5:ENST00000432298.5:ENST00000393443.5:ENST00000393444.7:ENST00000393447.8:ENST00000490039.1:ENST00000485394.6:ENST00000465641.5:ENST00000543837.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	55	2	3.19119	4.29944	5.40769	0.00325748	6.23078e-4	0.0524329	0.0229151
chr12	46384596	46384694	5124538	0	+	0.306122	(0.28,0.32]	chr12	483415	6	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	ENSG00000257261	ENSG00000257261.7	ENST00000687751.1:ENST00000667191.1:ENST00000663959.1:ENST00000666025.1:ENST00000611243.2:ENST00000666942.1:ENST00000551503.5:ENST00000551021.5:ENST00000653856.1	lncRNA	lncRNA	lncRNA	lncRNA	0	29	2	4.01002	4.299385	4.58875	0.0434868	0.0230574	0.162255	0.118056
chr19	44962175	44962275	7078204	0	+	0.31	(0.28,0.32]	chr19	707870	1	SS5_PROX	SS5_PROX:INTRON	CLPTM1	ENSG00000104853.16	ENST00000588855.5:ENST00000541297.6:ENST00000546079.5:ENST00000337392.10:ENST00000591304.1:ENST00000585961.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	29	2	4.01002	4.299385	4.58875	0.0434868	0.0230574	0.162255	0.118056
chr21	38120508	38120567	7464092	0	-	0.288136	(0.28,0.32]	chr21	760308	1	SS3_PROX	SS3_PROX:INTRON	DSCR4	ENSG00000184029.9	ENST00000398948.5:ENST00000328264.7:ENST00000482032.1	lncRNA	lncRNA	lncRNA	lncRNA	0	29	2	4.01002	4.299385	4.58875	0.0434868	0.0230574	0.162255	0.118056
chr3	101348351	101348451	1756917	0	-	0.31	(0.28,0.32]	chr3	178274	3	SS3_PROX	SS3_PROX:INTRON	SENP7	ENSG00000138468.16	ENST00000394095.7:ENST00000314261.11:ENST00000394094.6:ENST00000394091.5:ENST00000348610.3	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	4.01002	4.299385	4.58875	0.0434868	0.0230574	0.162255	0.118056
chr3	179609599	179609698	1567779	0	+	0.313131	(0.28,0.32]	chr3	162257	14	INTRON	INTRON	NDUFB5	ENSG00000136521.13	ENST00000488002.5:ENST00000611971.4:ENST00000493866.5:ENST00000259037.8:ENST00000472629.5:ENST00000468210.5:ENST00000359944.10:ENST00000477177.1:ENST00000482604.5:ENST00000480374.1:ENST00000496904.5:ENST00000473500.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	29	2	4.01002	4.299385	4.58875	0.0434868	0.0230574	0.162255	0.118056
chr8	105719029	105719129	3841259	0	+	0.32	(0.28,0.32]	chr8	354098	277	INTRON	INTRON	ZFPM2	ENSG00000169946.14	ENST00000407775.7:ENST00000520492.5:ENST00000511341.6:ENST00000517361.1:ENST00000522296.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	29	2	4.01002	4.299385	4.58875	0.0434868	0.0230574	0.162255	0.118056
chrX	153933659	153933753	7911791	0	-	0.297872	(0.28,0.32]	chrX	805333	1	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	ARHGAP4:NAA10	ENSG00000089820.16:ENSG00000102030.16	ENST00000494813.5:ENST00000464845.6:ENST00000370015.8:ENST00000393712.7:ENST00000370009.5:ENST00000466877.5:ENST00000460996.5:ENST00000370011.7:ENST00000432089.1:ENST00000477750.5:ENST00000393710.7:ENST00000478177.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	29	2	4.01002	4.299385	4.58875	0.0434868	0.0230574	0.162255	0.118056
chr11	57512458	57512558	4953773	0	-	0.49	(0.476,0.515]	chr11	465056	107	INTRON	INTRON	SLC43A1	ENSG00000149150.9	ENST00000278426.8:ENST00000528450.5:ENST00000530159.5:ENST00000533066.5:ENST00000524995.5:ENST00000534105.5:ENST00000533263.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	28	2	3.83018	4.299225	4.76827	0.0423385	0.00600704	0.161744	0.0674604
chr16	29923859	29923957	6472005	0	-	0.489796	(0.476,0.515]	chr16	625375	1	INTRON	INTRON	KCTD13	ENSG00000174943.11	ENST00000308768.9:ENST00000568000.6:ENST00000566842.5:ENST00000561540.2:ENST00000648037.1:ENST00000567795.3:ENST00000649581.1:ENST00000568721.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	28	2	3.83018	4.299225	4.76827	0.0423385	0.00600704	0.161744	0.0674604
chr17	67956400	67956499	6669044	0	+	0.515152	(0.476,0.515]	chr17	650689	12	EXON_MRNA	EXON_MRNA:INTRON	BPTF:ENSG00000279573	ENSG00000171634.19:ENSG00000279573.1	ENST00000306378.11:ENST00000321892.8:ENST00000342579.8:ENST00000644067.1:ENST00000424123.7:ENST00000580465.5:ENST00000581258.5:ENST00000625089.1	protein_coding	protein_coding	protein_coding:TEC	protein_coding:TEC	0	28	2	3.83018	4.299225	4.76827	0.0423385	0.00600704	0.161744	0.0674604
chr22	28546260	28546360	7571598	0	-	0.48	(0.476,0.515]	chr22	774287	1033	INTRON	INTRON	TTC28	ENSG00000100154.15	ENST00000397906.7	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	3.83018	4.299225	4.76827	0.0423385	0.00600704	0.161744	0.0674604
chr3	138587459	138587559	1829571	0	-	0.48	(0.476,0.515]	chr3	183892	141	INTRON	INTRON	CEP70	ENSG00000114107.9	ENST00000264982.8:ENST00000489254.5:ENST00000484888.5:ENST00000474781.5:ENST00000481834.5:ENST00000468900.5:ENST00000462419.5:ENST00000478673.5:ENST00000464035.5:ENST00000470159.5:ENST00000485115.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	28	2	3.83018	4.299225	4.76827	0.0423385	0.00600704	0.161744	0.0674604
chr3	195658764	195658864	1593430	0	+	0.49	(0.476,0.515]	chr3	165006	2	INTRON	INTRON	MUC20-OT1	ENSG00000242086.8	ENST00000457233.5:ENST00000429897.5:ENST00000452844.5:ENST00000453324.5:ENST00000445430.5:ENST00000425425.1	lncRNA	lncRNA	lncRNA	lncRNA	0	28	2	3.83018	4.299225	4.76827	0.0423385	0.00600704	0.161744	0.0674604
chr14	36773117	36773217	5874016	0	-	0.36	(0.35,0.378]	chr14	557997	135	INTRON	INTRON	SLC25A21	ENSG00000183032.12	ENST00000331299.6:ENST00000555449.5	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.1971	4.299189999999999	4.40128	0.0367539	0.0120289	0.138959	0.0962115
chr14	96800171	96800271	5810882	0	+	0.36	(0.35,0.378]	chr14	551000	4	SS5_PROX	SS5_PROX:INTRON	VRK1	ENSG00000100749.9	ENST00000553683.2:ENST00000680538.1:ENST00000555351.2:ENST00000681195.1:ENST00000681524.1:ENST00000680084.1:ENST00000679533.1:ENST00000681598.1:ENST00000679727.1:ENST00000679758.1:ENST00000680509.1:ENST00000557222.6:ENST00000679977.1:ENST00000680387.1:ENST00000680335.1:ENST00000680683.1:ENST00000681474.1:ENST00000216639.8:ENST00000681363.1:ENST00000681538.1:ENST00000679736.1:ENST00000681176.1:ENST00000680922.1:ENST00000679903.1:ENST00000557352.2:ENST00000681101.1:ENST00000681419.1:ENST00000680348.1:ENST00000679941.1:ENST00000679452.1:ENST00000680849.1:ENST00000679770.1:ENST00000681493.1:ENST00000681778.1:ENST00000680993.1:ENST00000681355.1:ENST00000681695.1:ENST00000681344.1:ENST00000680007.1:ENST00000679918.1:ENST00000681785.1:ENST00000679816.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	27	2	4.1971	4.299189999999999	4.40128	0.0367539	0.0120289	0.138959	0.0962115
chr15	75549540	75549640	6225009	0	-	0.37	(0.35,0.378]	chr15	594641	219	INTRON	INTRON	PTPN9	ENSG00000169410.11	ENST00000618819.5	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.1971	4.299189999999999	4.40128	0.0367539	0.0120289	0.138959	0.0962115
chr19	10171216	10171314	7134627	0	-	0.377551	(0.35,0.378]	chr19	719202	25	INTRON	INTRON	DNMT1	ENSG00000130816.17	ENST00000340748.8:ENST00000359526.9:ENST00000592705.5:ENST00000679103.1:ENST00000677634.1:ENST00000676820.1:ENST00000677250.1:ENST00000677013.1:ENST00000677685.1:ENST00000677616.1:ENST00000676604.1:ENST00000678024.1:ENST00000676610.1:ENST00000678804.1:ENST00000679313.1:ENST00000677946.1:ENST00000586988.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	27	2	4.1971	4.299189999999999	4.40128	0.0367539	0.0120289	0.138959	0.0962115
chr21	10542748	10542848	7369448	0	+	0.37	(0.35,0.378]	chr21	752093	3	SS5_PROX	SS5_PROX:INTRON	ENSG00000273840	ENSG00000273840.1	ENST00000612267.1	lncRNA	lncRNA	lncRNA	lncRNA	0	27	2	4.1971	4.299189999999999	4.40128	0.0367539	0.0120289	0.138959	0.0962115
chr6	69753914	69754010	3136167	0	-	0.375	(0.35,0.378]	chr6	292282	12	INTRON	INTRON	LMBRD1	ENSG00000168216.13	ENST00000649934.3:ENST00000647655.1:ENST00000648265.1:ENST00000649679.1:ENST00000649673.1:ENST00000649057.1:ENST00000370570.6:ENST00000648168.1:ENST00000649370.1:ENST00000647934.1:ENST00000649918.1:ENST00000649744.1:ENST00000650124.1:ENST00000648210.1:ENST00000648303.1:ENST00000649011.1:ENST00000472827.2:ENST00000648635.1:ENST00000647650.1:ENST00000649028.1:ENST00000649958.1:ENST00000649166.1:ENST00000650107.1:ENST00000647964.1:ENST00000648394.1:ENST00000648743.1:ENST00000650035.1:ENST00000649054.1:ENST00000650043.1:ENST00000649795.1:ENST00000649970.1:ENST00000647669.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	27	2	4.1971	4.299189999999999	4.40128	0.0367539	0.0120289	0.138959	0.0962115
chr7	73306394	73306494	3554229	0	-	0.37	(0.35,0.378]	chr7	330695	9	INTRON	INTRON	NSUN5	ENSG00000130305.17	ENST00000438747.7:ENST00000428206.5:ENST00000471461.5:ENST00000252594.10:ENST00000310326.8:ENST00000455763.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	27	2	4.1971	4.299189999999999	4.40128	0.0367539	0.0120289	0.138959	0.0962115
chr7	123556435	123556532	3631960	0	-	0.350515	(0.35,0.378]	chr7	337518	19	EXON_MRNA	EXON_MRNA:INTRON	NDUFA5	ENSG00000128609.16	ENST00000355749.7:ENST00000471770.5:ENST00000678090.1:ENST00000679163.1:ENST00000676614.1:ENST00000677251.1:ENST00000676730.1:ENST00000677306.1:ENST00000676516.1:ENST00000677391.1:ENST00000677264.1:ENST00000611607.4:ENST00000618945.4:ENST00000492549.6:ENST00000678032.1:ENST00000679052.1:ENST00000467117.6:ENST00000677134.1:ENST00000378795.9:ENST00000470123.2:ENST00000466896.5:ENST00000678251.1:ENST00000491033.1:ENST00000490618.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	27	2	4.1971	4.299189999999999	4.40128	0.0367539	0.0120289	0.138959	0.0962115
chr7	128320765	128320865	3635016	0	-	0.36	(0.35,0.378]	chr7	337846	1	SS5_PROX	SS5_PROX:INTRON	RBM28	ENSG00000106344.8	ENST00000223073.6:ENST00000481788.1:ENST00000415472.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	27	2	4.1971	4.299189999999999	4.40128	0.0367539	0.0120289	0.138959	0.0962115
chr9	122999765	122999865	4195684	0	+	0.36	(0.35,0.378]	chr9	382853	6	INTRON	INTRON	RABGAP1	ENSG00000011454.18	ENST00000456584.5:ENST00000373647.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	27	2	4.1971	4.299189999999999	4.40128	0.0367539	0.0120289	0.138959	0.0962115
chr10	15114957	15115056	4562178	0	-	0.363636	(0.35,0.378]	chr10	421080	16	INTRON	INTRON	NMT2	ENSG00000152465.18	ENST00000378165.9:ENST00000486786.1:ENST00000378150.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	27	2	4.29839	4.299	4.29961	0.0294717	0.0158483	0.128055	0.109464
chr12	57333328	57333428	5338280	0	-	0.37	(0.35,0.378]	chr12	510706	225	INTRON	INTRON	R3HDM2	ENSG00000179912.21	ENST00000402412.6:ENST00000347140.7:ENST00000634871.1:ENST00000403821.6:ENST00000448732.1	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.29839	4.299	4.29961	0.0294717	0.0158483	0.128055	0.109464
chr14	73089271	73089370	5784395	0	+	0.353535	(0.35,0.378]	chr14	547856	4	INTRON	INTRON	RBM25	ENSG00000119707.14	ENST00000527432.5:ENST00000531500.5:ENST00000261973.12:ENST00000532683.5:ENST00000525321.5:ENST00000526754.5:ENST00000528081.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	27	2	4.29839	4.299	4.29961	0.0294717	0.0158483	0.128055	0.109464
chr17	29835226	29835326	6750224	0	-	0.36	(0.35,0.378]	chr17	663436	409	INTRON	INTRON	SSH2	ENSG00000141298.19	ENST00000540801.6:ENST00000269033.7:ENST00000394848.5:ENST00000579040.5:ENST00000577483.1:ENST00000592397.1:ENST00000578411.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	27	2	4.29839	4.299	4.29961	0.0294717	0.0158483	0.128055	0.109464
chr2	108795121	108795221	848197	0	+	0.37	(0.35,0.378]	chr2	94963	4	SS5_PROX	SS5_PROX:INTRON	CCDC138	ENSG00000163006.12	ENST00000412964.6:ENST00000409529.6:ENST00000295124.9:ENST00000456512.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	27	2	4.29839	4.299	4.29961	0.0294717	0.0158483	0.128055	0.109464
chr20	21139134	21139233	7247045	0	+	0.363636	(0.35,0.378]	chr20	735810	22	INTRON	INTRON	KIZ	ENSG00000088970.16	ENST00000619574.4:ENST00000620891.4:ENST00000611685.4:ENST00000616848.4:ENST00000620553.2:ENST00000619189.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	27	2	4.29839	4.299	4.29961	0.0294717	0.0158483	0.128055	0.109464
chr22	21605456	21605556	7482082	0	+	0.37	(0.35,0.378]	chr22	763238	121	INTRON	INTRON	UBE2L3	ENSG00000185651.16	ENST00000458578.6:ENST00000545681.2:ENST00000696046.1:ENST00000342192.9:ENST00000496722.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	27	2	4.29839	4.299	4.29961	0.0294717	0.0158483	0.128055	0.109464
chr3	172163659	172163758	1560791	0	+	0.363636	(0.35,0.378]	chr3	161551	147	INTRON	INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000421757.5:ENST00000469491.5:ENST00000336824.8:ENST00000423424.5:ENST00000416957.5:ENST00000478016.1:ENST00000443501.1:ENST00000476794.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	27	2	4.29839	4.299	4.29961	0.0294717	0.0158483	0.128055	0.109464
chr3	182864355	182864455	1578595	0	+	0.37	(0.35,0.378]	chr3	162763	46	INTRON	INTRON	ATP11B	ENSG00000058063.16	ENST00000323116.10:ENST00000498086.5	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.29839	4.299	4.29961	0.0294717	0.0158483	0.128055	0.109464
chr7	10626948	10627048	3483049	0	-	0.37	(0.35,0.378]	chr7	325772	650	INTRON	INTRON	MGC4859	ENSG00000283117.1	ENST00000634803.1	lncRNA	lncRNA	lncRNA	lncRNA	0	27	2	4.29839	4.299	4.29961	0.0294717	0.0158483	0.128055	0.109464
chr10	96891632	96891732	4503561	0	+	0.48	(0.476,0.515]	chr10	414550	51	INTRON	INTRON	LCOR	ENSG00000196233.14	ENST00000676067.1:ENST00000676257.1:ENST00000676187.1:ENST00000675151.1:ENST00000675687.1:ENST00000675251.1:ENST00000676123.1:ENST00000371103.8:ENST00000675471.1:ENST00000421806.4:ENST00000675902.1:ENST00000540664.6:ENST00000676414.1:ENST00000675537.1:ENST00000675117.1:ENST00000675125.1:ENST00000356016.7:ENST00000371097.8:ENST00000676381.1:ENST00000674796.1:ENST00000674725.1:ENST00000675971.1:ENST00000676373.1:ENST00000676314.1:ENST00000675915.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	59	2	3.41728	4.298835	5.18039	0.00165726	6.58744e-4	0.0369207	0.0232396
chr9	131152992	131153092	4215909	0	+	0.43	(0.408,0.44]	chr9	386591	7	INTRON	INTRON	NUP214	ENSG00000126883.19	ENST00000695497.1:ENST00000695498.1:ENST00000695496.1:ENST00000695495.1:ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000651022.1:ENST00000525980.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	55	2	3.20437	4.2987850000000005	5.3932	0.00306596	7.81492e-4	0.0509893	0.0257168
chr2	275992	276090	685555	0	+	0.428571	(0.408,0.44]	chr2	80430	4	INTRON	INTRON	ACP1	ENSG00000143727.16	ENST00000272067.10:ENST00000413140.5:ENST00000442386.5:ENST00000272065.10:ENST00000453390.5:ENST00000484464.5:ENST00000463831.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	74	2	3.15799	4.298695	5.4394	6.50925e-4	3.8998e-4	0.0232863	0.0177751
chr10	11555906	11556006	4555506	0	-	0.33	(0.32,0.35]	chr10	420447	238	INTRON	INTRON	USP6NL	ENSG00000148429.15	ENST00000609104.6:ENST00000379237.6	protein_coding	protein_coding	protein_coding	protein_coding	2	80	2	2.82385	4.298525	5.7732	0.00217392	3.96807e-4	0.043502	0.0185763
chr16	85001252	85001351	6534069	0	-	0.484848	(0.476,0.515]	chr16	633151	49	INTRON	INTRON	ZDHHC7	ENSG00000153786.13	ENST00000313732.9:ENST00000344861.9:ENST00000564466.5:ENST00000569017.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	63	2	2.56033	4.298495	6.03666	0.0287634	9.45316e-6	0.127066	0.00222322
chr21	6485009	6485103	7425317	0	-	0.489362	(0.476,0.515]	chr21	757460	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	ENSG00000275895	ENSG00000275895.7	ENST00000610664.5:ENST00000623375.3:ENST00000637320.1:ENST00000639996.1:ENST00000620065.4:ENST00000636923.1:ENST00000624739.1:ENST00000619610.2:ENST00000636315.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	58	2	3.10264	4.29849	5.49434	0.00543163	1.62782e-4	0.0645052	0.0109774
chr22	18568500	18568599	7551037	0	-	0.454545	(0.44,0.476]	chr22	771829	156	INTRON	INTRON	PI4KAP1	ENSG00000274602.5	ENST00000612500.4:ENST00000611748.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	6	122	2	2.03524	4.2982949999999995	6.56135	0.00336403	2.36529e-6	0.053249	0.00107098
chr7	128320176	128320274	3635010	0	-	0.377551	(0.35,0.378]	chr7	337845	17	INTRON	INTRON	RBM28	ENSG00000106344.8	ENST00000223073.6:ENST00000481788.1:ENST00000415472.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	63	2	3.33403	4.29827	5.26251	0.00272701	6.20882e-4	0.0467523	0.0223951
chrX	134771746	134771844	7893240	0	-	0.367347	(0.35,0.378]	chrX	803513	5	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PABIR2	ENSG00000156504.17	ENST00000343004.10:ENST00000370790.5:ENST00000298090.10:ENST00000478384.5:ENST00000486347.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	63	2	3.33403	4.29827	5.26251	0.00272701	6.20882e-4	0.0467523	0.0223951
chr1	100056871	100056971	171793	0	+	0.38	(0.378,0.408]	chr1	18603	65	INTRON	INTRON	ENSG00000283761:MFSD14A	ENSG00000283761.1:ENSG00000156875.14	ENST00000638792.1:ENST00000638968.1:ENST00000639040.1:ENST00000639037.1:ENST00000638779.1:ENST00000639171.1:ENST00000640238.1:ENST00000640357.1:ENST00000370152.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	27	2	3.98867	4.29819	4.60771	0.0507	0.00567576	0.156383	0.0678837
chr1	202732036	202732133	619942	0	-	0.391753	(0.378,0.408]	chr1	73537	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	KDM5B	ENSG00000117139.18	ENST00000367265.9:ENST00000648338.1:ENST00000472822.6:ENST00000649542.1:ENST00000647757.1:ENST00000649400.1:ENST00000647747.1:ENST00000367264.7:ENST00000648473.1:ENST00000650569.1:ENST00000648056.1:ENST00000649230.1:ENST00000650506.1:ENST00000649770.1:ENST00000491153.2:ENST00000648469.1:ENST00000498276.2:ENST00000650417.1:ENST00000647657.1:ENST00000649089.1:ENST00000235790.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	27	2	3.98867	4.29819	4.60771	0.0507	0.00567576	0.156383	0.0678837
chr1	247072998	247073098	683255	0	-	0.39	(0.378,0.408]	chr1	80116	331	INTRON	INTRON	ZNF670-ZNF695:ZNF670	ENSG00000135747.11:ENSG00000277462.2	ENST00000465049.6:ENST00000474541.1:ENST00000366503.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	27	2	3.98867	4.29819	4.60771	0.0507	0.00567576	0.156383	0.0678837
chr10	21738430	21738530	4406483	0	+	0.4	(0.378,0.408]	chr10	406593	28	INTRON	INTRON	MLLT10	ENSG00000078403.17	ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000651298.1:ENST00000377059.7:ENST00000651382.1:ENST00000438473.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	27	2	3.98867	4.29819	4.60771	0.0507	0.00567576	0.156383	0.0678837
chr5	66023549	66023634	2371827	0	+	0.388235	(0.378,0.408]	chr5	228533	2	SS5_PROX	SS5_PROX:INTRON	ERBIN	ENSG00000112851.15	ENST00000380943.6:ENST00000416865.6:ENST00000380935.5:ENST00000284037.10:ENST00000380938.6:ENST00000511297.5:ENST00000506030.5:ENST00000508515.1:ENST00000507128.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	27	2	3.98867	4.29819	4.60771	0.0507	0.00567576	0.156383	0.0678837
chr8	124360363	124360463	4043394	0	-	0.4	(0.378,0.408]	chr8	368840	292	INTRON	INTRON	TMEM65	ENSG00000164983.8	ENST00000297632.8	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	3.98867	4.29819	4.60771	0.0507	0.00567576	0.156383	0.0678837
chr11	65639035	65639135	4806894	0	+	0.42	(0.408,0.44]	chr11	446904	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	SIPA1	ENSG00000213445.10	ENST00000534313.6:ENST00000533361.1:ENST00000526137.1	protein_coding	protein_coding	protein_coding	protein_coding	4	111	2	2.52239	4.29801	6.07363	0.00126655	7.09547e-6	0.0325433	0.00188852
chr6	87176756	87176856	2913470	0	+	0.43	(0.408,0.44]	chr6	275281	65	INTRON	INTRON	ZNF292	ENSG00000188994.13	ENST00000369577.8:ENST00000369578.6:ENST00000518845.1:ENST00000339907.8:ENST00000496806.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	59	2	3.2451	4.297985	5.35087	0.00337792	3.00323e-4	0.0516884	0.0155054
chr17	41780375	41780474	6769274	0	-	0.575758	(0.57,1]	chr17	666305	71	INTRON	INTRON	JUP	ENSG00000173801.17	ENST00000310706.9:ENST00000393930.5:ENST00000393931.8:ENST00000449889.5:ENST00000437187.5:ENST00000424457.5:ENST00000591690.5:ENST00000437369.5:ENST00000589036.1:ENST00000465293.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	48	2	3.19707	4.297865	5.39866	2.16062e-4	2.7267e-5	0.0129138	0.00430583
chr7	138563286	138563386	3435683	0	+	0.46	(0.44,0.476]	chr7	320015	65	INTRON	INTRON	TRIM24	ENSG00000122779.18	ENST00000343526.9:ENST00000415680.6:ENST00000497516.5:ENST00000493595.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	132	2	2.31122	4.297865	6.28451	5.48676e-4	1.11581e-5	0.0213049	0.00263978
chr2	172606669	172606769	920416	0	+	0.28	[0,0.28]	chr2	101391	108	UTR3	UTR3:EXON_MRNA	PDK1	ENSG00000152256.14	ENST00000282077.8	protein_coding	protein_coding	protein_coding	protein_coding	1	76	2	3.24659	4.29769	5.34879	0.00570201	0.00157139	0.0656459	0.0365659
chr5	54061562	54061662	2618421	0	-	0.35	(0.32,0.35]	chr5	248837	134	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	222	2	3.71364	4.29767	4.8817	3.60707e-6	1.98627e-6	0.0012378	9.67264e-4
chr1	35283952	35284051	68440	0	+	0.474747	(0.44,0.476]	chr1	8717	145	INTRON	INTRON	ZMYM4	ENSG00000146463.12	ENST00000314607.11:ENST00000441447.1	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	3.8344	4.29754	4.76068	0.041276	0.00653414	0.161534	0.0699952
chr12	31292319	31292418	5302510	0	-	0.444444	(0.44,0.476]	chr12	504637	42	INTRON	INTRON	SINHCAF	ENSG00000139146.14	ENST00000337682.9:ENST00000539409.5:ENST00000448582.6:ENST00000454658.6:ENST00000544921.5:ENST00000542983.1:ENST00000539004.5:ENST00000543615.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	28	2	3.8344	4.29754	4.76068	0.041276	0.00653414	0.161534	0.0699952
chr17	47482491	47482591	6789723	0	-	0.47	(0.44,0.476]	chr17	669660	1	SS5_PROX	SS5_PROX:INTRON	MRPL45P2	ENSG00000228782.8	ENST00000425159.7:ENST00000575291.5:ENST00000572695.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	28	2	3.8344	4.29754	4.76068	0.041276	0.00653414	0.161534	0.0699952
chr19	18864651	18864751	7033674	0	+	0.47	(0.44,0.476]	chr19	701071	4	SS5_PROX	SS5_PROX:INTRON	UPF1	ENSG00000005007.13	ENST00000262803.10:ENST00000599848.5:ENST00000596842.5:ENST00000600689.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	28	2	3.8344	4.29754	4.76068	0.041276	0.00653414	0.161534	0.0699952
chr9	33006920	33007020	4242834	0	-	0.46	(0.44,0.476]	chr9	390001	54	INTRON	INTRON	APTX	ENSG00000137074.20	ENST00000673360.1:ENST00000436040.7:ENST00000673487.1:ENST00000467331.6:ENST00000482687.6:ENST00000485479.6:ENST00000460940.6:ENST00000673248.1:ENST00000495360.6:ENST00000672281.1:ENST00000468275.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	28	2	3.8344	4.29754	4.76068	0.041276	0.00653414	0.161534	0.0699952
chr2	241296653	241296753	1348379	0	-	0.39	(0.378,0.408]	chr2	141648	237	INTRON	INTRON	HDLBP	ENSG00000115677.18	ENST00000310931.10:ENST00000391976.6:ENST00000428482.5:ENST00000430918.5:ENST00000441124.5:ENST00000413241.5:ENST00000423693.5:ENST00000425989.5:ENST00000420451.5:ENST00000417540.5:ENST00000462130.1:ENST00000496569.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	56	2	3.47377	4.297525	5.12128	0.00251746	0.00103087	0.0446195	0.0294094
chr5	28855935	28856035	2330309	0	+	0.41	(0.408,0.44]	chr5	225135	454	INTRON	INTRON	LINC02109	ENSG00000259786.7	ENST00000658190.1	lncRNA	lncRNA	lncRNA	lncRNA	1	56	2	3.02513	4.29743	5.56973	0.0059965	3.81714e-4	0.0700606	0.0181283
chr3	197190926	197191026	1902429	0	-	0.57	(0.515,0.57]	chr3	190642	69	INTRON	INTRON	DLG1	ENSG00000075711.21	ENST00000667157.1:ENST00000346964.6:ENST00000656428.1:ENST00000663148.1:ENST00000655488.1:ENST00000357674.9:ENST00000671185.1:ENST00000658701.1:ENST00000667104.1:ENST00000661336.1:ENST00000669565.1:ENST00000670455.1:ENST00000656087.1:ENST00000670366.1:ENST00000653583.1:ENST00000661453.1:ENST00000665728.1:ENST00000664564.1:ENST00000660432.1:ENST00000660898.1:ENST00000657381.1:ENST00000659221.1:ENST00000654737.1:ENST00000669332.1:ENST00000659716.1:ENST00000664991.1:ENST00000419354.5:ENST00000661440.1:ENST00000667971.1:ENST00000670935.1:ENST00000668578.1:ENST00000666007.1:ENST00000661229.1:ENST00000661013.1:ENST00000436682.6:ENST00000662727.1:ENST00000422288.6:ENST00000448528.6:ENST00000656944.1:ENST00000392382.6:ENST00000450955.5:ENST00000658155.1:ENST00000669714.1:ENST00000654733.1:ENST00000469073.2:ENST00000419227.5:ENST00000392381.7:ENST00000471733.5:ENST00000419553.6:ENST00000661808.1:ENST00000453607.5:ENST00000456699.6:ENST00000392380.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	67	2	3.16455	4.29737	5.43019	3.23741e-4	2.60422e-4	0.0159645	0.0148796
chr4	152781225	152781325	2065138	0	+	0.46	(0.44,0.476]	chr4	204403	6	INTRON	INTRON	ARFIP1	ENSG00000164144.16	ENST00000451320.6:ENST00000429148.6:ENST00000353617.7:ENST00000405727.6:ENST00000356064.3:ENST00000510831.5:ENST00000509413.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	59	2	3.35227	4.2971900000000005	5.24211	0.0022005699999999998	4.87398e-4	0.0417893	0.0199652
chr10	35509028	35509128	4426237	0	+	0.38	(0.378,0.408]	chr10	407931	71	INTRON	INTRON	CCNY	ENSG00000108100.18	ENST00000374706.5:ENST00000490012.6:ENST00000493157.6:ENST00000374704.8:ENST00000265375.13:ENST00000339497.7:ENST00000492478.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	27	2	4.09379	4.297175	4.50056	0.023912	0.015974	0.129075	0.101453
chr15	48339944	48340044	6018894	0	+	0.38	(0.378,0.408]	chr15	573630	4	SS3_PROX	SS3_PROX:INTRON	DUT	ENSG00000128951.14	ENST00000559935.5:ENST00000559416.5:ENST00000558813.5:ENST00000331200.8:ENST00000558472.5:ENST00000558978.5:ENST00000455976.6:ENST00000559540.5:ENST00000558367.1:ENST00000561350.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	27	2	4.09379	4.297175	4.50056	0.023912	0.015974	0.129075	0.101453
chr16	68347841	68347925	6372649	0	+	0.392857	(0.378,0.408]	chr16	612476	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PRMT7	ENSG00000132600.18	ENST00000686904.1:ENST00000689486.1:ENST00000693200.1:ENST00000685141.1:ENST00000562050.6:ENST00000565745.6:ENST00000685109.1:ENST00000689637.1:ENST00000692867.1:ENST00000693670.1:ENST00000692760.1:ENST00000687654.1:ENST00000441236.3:ENST00000675132.1:ENST00000688470.1:ENST00000691833.1:ENST00000690432.1:ENST00000691804.1:ENST00000691961.1:ENST00000690932.1:ENST00000692632.1:ENST00000687444.1:ENST00000692283.1:ENST00000692621.1:ENST00000686053.1:ENST00000692966.1:ENST00000691663.1:ENST00000449359.7:ENST00000693309.1:ENST00000690311.1:ENST00000565356.5:ENST00000687558.1:ENST00000339507.9:ENST00000688969.1:ENST00000568975.5:ENST00000567542.5:ENST00000566687.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	27	2	4.09379	4.297175	4.50056	0.023912	0.015974	0.129075	0.101453
chr16	84616475	84616575	6533769	0	-	0.39	(0.378,0.408]	chr16	633093	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	COTL1	ENSG00000103187.8	ENST00000262428.5:ENST00000564057.1:ENST00000564662.1:ENST00000567786.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	27	2	4.09379	4.297175	4.50056	0.023912	0.015974	0.129075	0.101453
chr19	2215966	2216065	6996719	0	+	0.383838	(0.378,0.408]	chr19	693535	2	SS3_PROX	SS3_PROX:INTRON	DOT1L	ENSG00000104885.19	ENST00000398665.8:ENST00000686010.1:ENST00000608122.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	27	2	4.09379	4.297175	4.50056	0.023912	0.015974	0.129075	0.101453
chr3	14194358	14194457	1369321	0	+	0.393939	(0.378,0.408]	chr3	144298	100	INTRON	INTRON	LSM3	ENSG00000170860.4	ENST00000306024.4	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.09379	4.297175	4.50056	0.023912	0.015974	0.129075	0.101453
chr4	99080269	99080358	2208640	0	-	0.382022	(0.378,0.408]	chr4	216225	3	SS3_PROX	SS3_PROX:INTRON	ADH5	ENSG00000197894.12	ENST00000296412.14:ENST00000626055.2:ENST00000512621.5:ENST00000512659.5:ENST00000508511.5:ENST00000503130.5:ENST00000502590.5:ENST00000512991.5:ENST00000505652.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	27	2	4.09379	4.297175	4.50056	0.023912	0.015974	0.129075	0.101453
chrX	136915037	136915135	7727517	0	+	0.387755	(0.378,0.408]	chrX	790760	4	INTRON	INTRON	TM9SF5P	ENSG00000234062.9	ENST00000650669.2:ENST00000687469.1:ENST00000431464.6:ENST00000685550.1:ENST00000685929.1:ENST00000424306.5:ENST00000687978.1:ENST00000688713.1:ENST00000693626.1:ENST00000686432.1:ENST00000693698.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	27	2	4.09379	4.297175	4.50056	0.023912	0.015974	0.129075	0.101453
chr16	2245705	2245798	6431467	0	-	0.462366	(0.44,0.476]	chr16	618761	8	INTRON	INTRON	ECI1	ENSG00000167969.13	ENST00000301729.9:ENST00000562238.5:ENST00000570258.5:ENST00000566379.1:ENST00000563029.5:ENST00000561688.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	73	2	2.82351	4.29706	5.77061	0.00191049	1.44264e-4	0.0403772	0.0109794
chr2	131133812	131133911	864690	0	+	0.353535	(0.35,0.378]	chr2	97154	4	INTRON	INTRON	PLEKHB2	ENSG00000115762.17	ENST00000403716.5:ENST00000439822.6:ENST00000409158.5:ENST00000234115.10:ENST00000628582.2:ENST00000693505.1:ENST00000438882.6:ENST00000404460.5:ENST00000409612.5:ENST00000409279.1	protein_coding	protein_coding	protein_coding	protein_coding	1	62	2	3.03814	4.29657	5.555	0.00767003	1.71389e-4	0.075364	0.0113605
chr11	94769559	94769658	4851106	0	+	0.444444	(0.44,0.476]	chr11	452536	6	INTRON	INTRON	AMOTL1	ENSG00000166025.18	ENST00000299004.13:ENST00000317829.12:ENST00000433060.3	protein_coding	protein_coding	protein_coding	protein_coding	1	55	2	3.50584	4.296215	5.08659	0.00226401	8.66138e-4	0.0425438	0.0266729
chr11	3366744	3366843	4893723	0	-	0.606061	(0.57,1]	chr11	458671	43	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:INTRON	ZNF195	ENSG00000005801.18	ENST00000528796.5:ENST00000399602.9:ENST00000354599.10:ENST00000343338.11:ENST00000620374.4:ENST00000649622.1:ENST00000429541.6:ENST00000005082.13:ENST00000526601.5:ENST00000438262.6:ENST00000528410.5:ENST00000528218.5:ENST00000529789.5:ENST00000525313.6:ENST00000533036.5:ENST00000529228.5:ENST00000529678.5:ENST00000528636.1:ENST00000427810.6:ENST00000534569.5:ENST00000524857.5:ENST00000530643.5:ENST00000618467.4:ENST00000330692.11	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	40	2	3.91793	4.29618	4.67443	8.07515e-4	5.86096e-5	0.0258804	0.00668534
chr2	173932969	173933069	1268746	0	-	0.33	(0.32,0.35]	chr2	134207	138	INTRON	INTRON	SP3	ENSG00000172845.18	ENST00000650743.1:ENST00000310015.12:ENST00000416195.1:ENST00000418194.7:ENST00000652005.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	123	2	2.42777	4.2959700000000005	6.16417	9.29501e-4	7.39992e-5	0.0278746	0.00770735
chr1	27468301	27468401	406546	0	-	0.41	(0.408,0.44]	chr1	48986	390	INTRON	INTRON	WASF2	ENSG00000158195.11	ENST00000618852.5:ENST00000536657.1	protein_coding	protein_coding	protein_coding	protein_coding	4	100	2	2.50424	4.295945	6.08765	0.00101099	3.51008e-5	0.0293364	0.00499276
chr12	50023744	50023842	5322665	0	-	0.306122	(0.28,0.32]	chr12	507420	22	INTRON	INTRON	RACGAP1	ENSG00000161800.13	ENST00000312377.10:ENST00000427314.6:ENST00000454520.6:ENST00000547905.5:ENST00000548320.5:ENST00000548598.5:ENST00000552310.5:ENST00000550149.5:ENST00000546786.5:ENST00000546595.5:ENST00000551145.5:ENST00000548824.5:ENST00000548644.5:ENST00000551260.5:ENST00000546723.5:ENST00000552921.5:ENST00000548247.1:ENST00000552157.5:ENST00000546764.5:ENST00000549777.5:ENST00000550651.5:ENST00000552004.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	64	2	3.54514	4.295465	5.04579	0.00714672	0.00100603	0.0723634	0.0292285
chr3	38367884	38367984	1399693	0	+	0.42	(0.408,0.44]	chr3	146813	3	SS3_PROX	SS3_PROX:INTRON	XYLB	ENSG00000093217.11	ENST00000207870.8:ENST00000650590.1:ENST00000424034.5:ENST00000649234.1:ENST00000487569.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	79	2	2.75707	4.295355	5.83364	0.00317496	2.74563e-5	0.0503542	0.00414215
chr15	25420057	25420155	6121650	0	-	0.295918	(0.28,0.32]	chr15	582921	39	INTRON	INTRON	UBE3A	ENSG00000114062.22	ENST00000648336.2:ENST00000438097.6:ENST00000635914.1:ENST00000638155.1:ENST00000637886.1:ENST00000638011.1:ENST00000649550.1:ENST00000650110.1:ENST00000630424.2:ENST00000566215.5:ENST00000428984.6:ENST00000675177.1:ENST00000675593.1:ENST00000625778.3:ENST00000675000.1:ENST00000626793.2:ENST00000628733.2:ENST00000630907.2:ENST00000675038.1:ENST00000629886.2:ENST00000628267.2:ENST00000629252.2:ENST00000625681.2:ENST00000626589.2:ENST00000627018.1:ENST00000676452.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	85	2	3.03222	4.295335	5.55845	0.00141854	9.72587e-4	0.0340865	0.0287313
chr3	72429603	72429703	1745751	0	-	0.51	(0.476,0.515]	chr3	177368	491	INTRON	INTRON	RYBP	ENSG00000163602.12	ENST00000477973.5	protein_coding	protein_coding	protein_coding	protein_coding	3	160	2	4.2289	4.295055	4.36121	1.70577e-5	5.42894e-7	0.00330681	3.96157e-4
chr7	23367960	23368060	3502635	0	-	0.33	(0.32,0.35]	chr7	326877	49	INTRON	INTRON	IGF2BP3	ENSG00000136231.14	ENST00000258729.8:ENST00000421467.6:ENST00000468263.5:ENST00000492771.5:ENST00000479504.5:ENST00000466809.6:ENST00000491719.5:ENST00000465058.5:ENST00000469723.5:ENST00000474105.5:ENST00000476938.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	65	2	2.89743	4.2947500000000005	5.69207	0.0127608	1.29349e-4	0.0926667	0.00979769
chr6	18257521	18257620	3069178	0	-	0.494949	(0.476,0.515]	chr6	285204	11	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	DEK	ENSG00000124795.17	ENST00000652689.1:ENST00000651624.1:ENST00000515770.2:ENST00000651992.1:ENST00000507591.2:ENST00000505224.5:ENST00000244776.11:ENST00000652576.1:ENST00000503715.5:ENST00000515742.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	120	2	3.97885	4.29463	4.61041	1.30749e-4	1.88543e-6	0.0103941	8.35956e-4
chr18	12967178	12967277	6876352	0	+	0.353535	(0.35,0.378]	chr18	681295	23	INTRON	INTRON	SEH1L	ENSG00000085415.16	ENST00000262124.15:ENST00000399892.7:ENST00000585730.5:ENST00000589446.5:ENST00000587761.1:ENST00000588251.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	130	2	4.02044	4.294585	4.56873	1.4631e-4	3.13066e-6	0.011065	0.00114282
chr11	105437645	105437745	5029597	0	-	0.34	(0.32,0.35]	chr11	474017	1690	INTRON	INTRON	CARD18	ENSG00000255501.3	ENST00000649856.1:ENST00000528811.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	65	2	3.20216	4.2945	5.38684	0.00480708	5.01164e-4	0.0602209	0.020217099999999998
chr17	31122859	31122959	6591412	0	+	0.33	(0.32,0.35]	chr17	641053	271	INTRON	INTRON	NF1	ENSG00000196712.20	ENST00000696138.1:ENST00000356175.7:ENST00000487476.5:ENST00000691014.1:ENST00000358273.9:ENST00000431387.8:ENST00000579081.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	60	2	3.45772	4.294475	5.13123	0.00394704	0.00128487	0.0548259	0.0333518
chr6	89775033	89775133	3161578	0	-	0.34	(0.32,0.35]	chr6	294825	3	SS3_PROX	SS3_PROX:INTRON	MDN1	ENSG00000112159.12	ENST00000369393.8:ENST00000629399.2:ENST00000439638.1	protein_coding	protein_coding	protein_coding	protein_coding	1	60	2	3.45772	4.294475	5.13123	0.00394704	0.00128487	0.0548259	0.0333518
chr2	218529455	218529555	1329541	0	-	0.41	(0.408,0.44]	chr2	139220	1	SS5_PROX	SS5_PROX:INTRON	USP37	ENSG00000135913.11	ENST00000258399.8:ENST00000454775.5:ENST00000415516.5:ENST00000418019.5:ENST00000478329.1:ENST00000338465.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	28	2	3.83494	4.29446	4.75398	0.0411442	0.00703931	0.161534	0.0718189
chr3	195363466	195363565	1895115	0	-	0.424242	(0.408,0.44]	chr3	189674	53	INTRON	INTRON	ACAP2	ENSG00000114331.16	ENST00000326793.11:ENST00000635383.1:ENST00000480906.5:ENST00000481463.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	28	2	3.83494	4.29446	4.75398	0.0411442	0.00703931	0.161534	0.0718189
chr1	70300563	70300663	480323	0	-	0.37	(0.35,0.378]	chr1	57733	4	SS5_PROX	SS5_PROX:INTRON	ANKRD13C	ENSG00000118454.13	ENST00000370944.9:ENST00000262346.6:ENST00000490846.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	62	2	3.17244	4.294295	5.41615	0.00487788	3.21724e-4	0.0607461	0.0159645
chr12	101701625	101701724	5203051	0	+	0.363636	(0.35,0.378]	chr12	492661	31	INTRON	INTRON	CHPT1	ENSG00000111666.11	ENST00000550385.1:ENST00000229266.8:ENST00000549872.5:ENST00000552351.5:ENST00000549128.5:ENST00000546490.1:ENST00000552215.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	62	2	3.17244	4.294295	5.41615	0.00487788	3.21724e-4	0.0607461	0.0159645
chr6	57100102	57100202	2878158	0	+	0.37	(0.35,0.378]	chr6	273244	1	SS3_PROX	SS3_PROX:INTRON	ZNF451	ENSG00000112200.17	ENST00000515290.5:ENST00000510483.5:ENST00000357489.7:ENST00000370708.8:ENST00000370702.5:ENST00000444273.6:ENST00000370711.9:ENST00000508603.5:ENST00000370706.9:ENST00000491832.6:ENST00000502749.1:ENST00000504603.1:ENST00000509071.5:ENST00000510989.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	77	2	3.05367	4.2941899999999995	5.53471	7.17897e-4	6.96925e-4	0.0244389	0.024224
chr2	20256962	20257059	1075825	0	-	0.505155	(0.476,0.515]	chr2	114942	4	INTRON	INTRON	PUM2	ENSG00000055917.16	ENST00000338086.9:ENST00000361078.7:ENST00000440577.5	protein_coding	protein_coding	protein_coding	protein_coding	1	55	2	3.49411	4.294169999999999	5.09423	0.00204588	9.23453e-4	0.04086	0.0278392
chr7	156888669	156888769	3687973	0	-	0.47	(0.44,0.476]	chr7	342096	514	INTRON	INTRON	LMBR1	ENSG00000105983.23	ENST00000353442.10:ENST00000415428.5:ENST00000454132.5:ENST00000434503.5:ENST00000430278.5:ENST00000434278.5:ENST00000444719.5:ENST00000461469.5:ENST00000414218.1:ENST00000434453.1:ENST00000498034.5:ENST00000433968.5:ENST00000485985.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	74	2	2.64669	4.29416	5.94163	0.0040295	6.45088e-5	0.0578376	0.00711194
chr20	50532977	50533077	7286140	0	+	0.42	(0.408,0.44]	chr20	741241	220	INTRON	INTRON	PTPN1	ENSG00000196396.10	ENST00000541713.5:ENST00000371621.5	protein_coding	protein_coding	protein_coding	protein_coding	3	95	2	2.48326	4.294065	6.10487	0.00324772	5.90186e-6	0.0508595	0.00170648
chr1	8611469	8611568	371716	0	-	0.393939	(0.378,0.408]	chr1	43521	208	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000400907.6:ENST00000656437.1:ENST00000659924.1:ENST00000480342.5:ENST00000514428.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	60	2	3.14892	4.29392	5.43892	0.00499984	2.28412e-4	0.0617433	0.0133228
chr1	21722358	21722452	396240	0	-	0.478723	(0.476,0.515]	chr1	47269	2	INTRON	INTRON	USP48	ENSG00000090686.16	ENST00000400301.5:ENST00000308271.14:ENST00000374732.7:ENST00000529637.5:ENST00000487880.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	55	2	3.13389	4.293895	5.4539	0.00405473	5.16081e-4	0.0578376	0.0208667
chr12	69599625	69599713	5165535	0	+	0.5	(0.476,0.515]	chr12	489279	4	SS3_PROX	SS3_PROX:INTRON	CCT2	ENSG00000166226.13	ENST00000299300.11:ENST00000544368.6:ENST00000550010.5:ENST00000543146.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	55	2	3.13389	4.293895	5.4539	0.00405473	5.16081e-4	0.0578376	0.0208667
chr1	180393117	180393217	594735	0	-	0.37	(0.35,0.378]	chr1	71180	662	INTRON	INTRON	ACBD6	ENSG00000230124.8	ENST00000645415.1:ENST00000642319.1:ENST00000496993.5:ENST00000475338.2:ENST00000367595.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	28	2	3.94291	4.29374	4.64457	0.0374229	0.012652	0.155878	0.0926667
chr15	64333386	64333486	6204602	0	-	0.37	(0.35,0.378]	chr15	591762	165	INTRON	INTRON	CSNK1G1:ENSG00000259316	ENSG00000169118.18:ENSG00000259316.12	ENST00000303052.13:ENST00000607537.6:ENST00000634654.1:ENST00000634811.1:ENST00000606793.3:ENST00000634251.1:ENST00000634847.3:ENST00000635529.1:ENST00000634318.1:ENST00000635160.1:ENST00000635704.1:ENST00000634529.1:ENST00000635511.1:ENST00000635605.1:ENST00000635593.1:ENST00000634259.2:ENST00000560278.2:ENST00000635413.1:ENST00000634538.1:ENST00000635320.1:ENST00000558783.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	28	2	3.94291	4.29374	4.64457	0.0374229	0.012652	0.155878	0.0926667
chr6	20467754	20467854	2828108	0	+	0.36	(0.35,0.378]	chr6	265583	277	INTRON	INTRON	E2F3	ENSG00000112242.16	ENST00000346618.8:ENST00000535432.2	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	3.94291	4.29374	4.64457	0.0374229	0.012652	0.155878	0.0926667
chr7	56103411	56103511	3536525	0	-	0.43	(0.408,0.44]	chr7	329850	4	SS3_PROX	SS3_PROX:INTRON	CHCHD2	ENSG00000106153.13	ENST00000395422.4:ENST00000473095.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	76	2	2.49983	4.29374	6.08765	0.00713527	3.51008e-5	0.0756118	0.00499276
chr8	47832426	47832523	3944414	0	-	0.350515	(0.35,0.378]	chr8	361659	1	INTRON	INTRON	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	3.94291	4.29374	4.64457	0.0374229	0.012652	0.155878	0.0926667
chr7	87162888	87162979	3345728	0	+	0.285714	(0.28,0.32]	chr7	311633	2	UTR5	UTR5:EXON_MRNA:SS3_PROX:INTRON	DMTF1	ENSG00000135164.19	ENST00000413276.6:ENST00000447863.5:ENST00000579677.5:ENST00000425406.5:ENST00000446796.6:ENST00000420131.5:ENST00000414630.6:ENST00000547146.6:ENST00000579850.5:ENST00000453049.5:ENST00000331242.12:ENST00000430405.7:ENST00000449088.7:ENST00000448598.5:ENST00000428819.5:ENST00000432937.6:ENST00000584619.5:ENST00000432366.6:ENST00000423590.6:ENST00000394703.9:ENST00000584457.5:ENST00000580710.5:ENST00000579592.5:ENST00000434534.5:ENST00000582925.5:ENST00000412139.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	101	2	2.53475	4.293335	6.05192	0.00257029	2.17456e-4	0.0466761	0.0135077
chr1	12606283	12606383	379427	0	-	0.32	(0.28,0.32]	chr1	44547	101	INTRON	INTRON	DHRS3	ENSG00000162496.9	ENST00000616661.5:ENST00000464917.5:ENST00000482265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	141	2	1.94762	4.29327	6.63892	0.0061378	1.55907e-5	0.0709719	0.0031803
chr1	235319816	235319916	663779	0	-	0.53	(0.515,0.57]	chr1	78552	587	INTRON	INTRON	ARID4B	ENSG00000054267.22	ENST00000349213.7:ENST00000366603.6:ENST00000264183.9:ENST00000421364.5:ENST00000491632.5:ENST00000418304.1:ENST00000466653.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	25	2	4.08538	4.2932	4.50102	0.0253843	0.00510768	0.12011	0.0646039
chr14	102632311	102632411	5822930	0	+	0.56	(0.515,0.57]	chr14	552490	386	INTRON	INTRON	RCOR1	ENSG00000089902.10	ENST00000262241.7	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	4.08538	4.2932	4.50102	0.0253843	0.00510768	0.12011	0.0646039
chr16	30708912	30709012	6338747	0	+	0.52	(0.515,0.57]	chr16	607740	8	INTRON	INTRON	SRCAP	ENSG00000080603.17	ENST00000262518.9:ENST00000395059.6	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	4.08538	4.2932	4.50102	0.0253843	0.00510768	0.12011	0.0646039
chr19	9538354	9538451	7132730	0	-	0.525773	(0.515,0.57]	chr19	718803	2	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ZNF426	ENSG00000130818.12	ENST00000253115.7:ENST00000593003.5:ENST00000589289.1:ENST00000635810.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	25	2	4.08538	4.2932	4.50102	0.0253843	0.00510768	0.12011	0.0646039
chr3	128063596	128063694	1496643	0	+	0.520408	(0.515,0.57]	chr3	156276	26	INTRON	INTRON	SEC61A1	ENSG00000058262.10	ENST00000464451.5:ENST00000243253.8:ENST00000424880.2	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	4.08538	4.2932	4.50102	0.0253843	0.00510768	0.12011	0.0646039
chr6	35378017	35378117	2852333	0	+	0.52	(0.515,0.57]	chr6	269491	305	INTRON	INTRON	PPARD	ENSG00000112033.14	ENST00000418635.6:ENST00000448077.6:ENST00000360694.8:ENST00000311565.4:ENST00000337400.6	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	4.08538	4.2932	4.50102	0.0253843	0.00510768	0.12011	0.0646039
chr17	48933676	48933761	6791655	0	-	0.517647	(0.515,0.57]	chr17	670082	2	SS3_PROX	SS3_PROX:INTRON	SNF8	ENSG00000159210.10	ENST00000502492.6:ENST00000510558.6:ENST00000509995.5:ENST00000290330.7:ENST00000514089.5:ENST00000509989.5:ENST00000573795.5:ENST00000576353.5:ENST00000514929.1:ENST00000507302.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	55	2	3.66151	4.29312	4.92473	0.00108255	4.49566e-4	0.0300133	0.0196044
chr1	235488472	235488569	664296	0	-	0.505155	(0.476,0.515]	chr1	78624	34	INTRON	INTRON	B3GALNT2	ENSG00000162885.14	ENST00000366600.8:ENST00000675193.1:ENST00000676288.1:ENST00000675555.1:ENST00000612859.4:ENST00000313984.3:ENST00000494378.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	27	2	3.97201	4.2930150000000005	4.61402	0.030904	0.00947755	0.143385	0.0817766
chr10	12177492	12177592	4557921	0	-	0.49	(0.476,0.515]	chr10	420667	3	SS5_PROX	SS5_PROX:INTRON	NUDT5	ENSG00000165609.13	ENST00000491614.6:ENST00000378937.7:ENST00000537776.5:ENST00000378952.7:ENST00000476462.5:ENST00000378940.7:ENST00000378927.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	27	2	3.97201	4.2930150000000005	4.61402	0.030904	0.00947755	0.143385	0.0817766
chr10	96837334	96837434	4503015	0	+	0.49	(0.476,0.515]	chr10	414529	31	INTRON	INTRON	LCOR	ENSG00000196233.14	ENST00000676067.1:ENST00000676257.1:ENST00000676187.1:ENST00000675151.1:ENST00000675687.1:ENST00000675251.1:ENST00000676123.1:ENST00000371103.8:ENST00000675471.1:ENST00000421806.4:ENST00000675902.1:ENST00000540664.6:ENST00000676414.1:ENST00000675537.1:ENST00000675117.1:ENST00000675125.1:ENST00000356016.7:ENST00000371097.8:ENST00000676381.1:ENST00000674796.1:ENST00000674725.1:ENST00000675971.1:ENST00000676373.1:ENST00000676314.1:ENST00000675915.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	27	2	3.97201	4.2930150000000005	4.61402	0.030904	0.00947755	0.143385	0.0817766
chr15	41682603	41682702	6007079	0	+	0.515152	(0.476,0.515]	chr15	571636	77	INTRON	INTRON	MGA	ENSG00000174197.18	ENST00000566718.6:ENST00000545763.6:ENST00000570161.6:ENST00000566586.6:ENST00000219905.13:ENST00000561532.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	27	2	3.97201	4.2930150000000005	4.61402	0.030904	0.00947755	0.143385	0.0817766
chr15	50681033	50681133	6173225	0	-	0.49	(0.476,0.515]	chr15	588397	176	INTRON	INTRON	TRPM7:ENSG00000288645	ENSG00000092439.16:ENSG00000288645.1	ENST00000646667.1:ENST00000560955.5:ENST00000676296.1	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	3.97201	4.2930150000000005	4.61402	0.030904	0.00947755	0.143385	0.0817766
chr17	65027902	65028002	6818133	0	-	0.51	(0.476,0.515]	chr17	674129	92	INTRON	INTRON	GNA13	ENSG00000120063.10	ENST00000439174.7:ENST00000541118.1	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	3.97201	4.2930150000000005	4.61402	0.030904	0.00947755	0.143385	0.0817766
chr3	129885414	129885513	1818024	0	-	0.515152	(0.476,0.515]	chr3	182656	45	INTRON	INTRON	TMCC1	ENSG00000172765.18	ENST00000393238.8:ENST00000426664.6:ENST00000648771.1:ENST00000505616.5:ENST00000505924.5:ENST00000512902.5:ENST00000508869.5:ENST00000515024.5:ENST00000508729.5:ENST00000509440.5:ENST00000510521.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	27	2	3.97201	4.2930150000000005	4.61402	0.030904	0.00947755	0.143385	0.0817766
chr6	41788025	41788125	2864497	0	+	0.5	(0.476,0.515]	chr6	270892	2	SS5_PROX	SS5_PROX:INTRON	TOMM6	ENSG00000214736.8	ENST00000398884.7:ENST00000398881.4	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	3.97201	4.2930150000000005	4.61402	0.030904	0.00947755	0.143385	0.0817766
chr6	145881918	145882017	3244260	0	-	0.494949	(0.476,0.515]	chr6	301290	171	INTRON	INTRON	SHPRH	ENSG00000146414.17	ENST00000417762.5	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	3.97201	4.2930150000000005	4.61402	0.030904	0.00947755	0.143385	0.0817766
chr6	157851671	157851770	3016047	0	+	0.50505	(0.476,0.515]	chr6	281353	216	INTRON	INTRON	SNX9	ENSG00000130340.17	ENST00000614703.4:ENST00000614800.4:ENST00000680863.1:ENST00000679814.1:ENST00000680464.1:ENST00000681186.1:ENST00000679732.1:ENST00000681183.1:ENST00000681534.1:ENST00000681651.1:ENST00000680089.1:ENST00000680078.1:ENST00000680974.1:ENST00000680095.1:ENST00000680015.1:ENST00000681138.1:ENST00000392185.8:ENST00000679790.1:ENST00000680495.1:ENST00000679691.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	27	2	3.97201	4.2930150000000005	4.61402	0.030904	0.00947755	0.143385	0.0817766
chr7	96167773	96167871	3574697	0	-	0.510204	(0.476,0.515]	chr7	333000	4	INTRON	INTRON	SLC25A13	ENSG00000004864.14	ENST00000265631.10:ENST00000416240.6:ENST00000490072.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	27	2	3.97201	4.2930150000000005	4.61402	0.030904	0.00947755	0.143385	0.0817766
chr11	46803203	46803301	4948325	0	-	0.428571	(0.408,0.44]	chr11	463813	10	INTRON	INTRON	CKAP5	ENSG00000175216.15	ENST00000529230.6:ENST00000312055.9:ENST00000354558.7	protein_coding	protein_coding	protein_coding	protein_coding	3	166	2	3.36795	4.292905	5.21786	2.02232e-4	2.28279e-8	0.0129814	5.63312e-5
chr1	162579703	162579803	238502	0	+	0.34	(0.32,0.35]	chr1	28715	1	SS5_PROX	SS5_PROX:INTRON	UAP1	ENSG00000117143.14	ENST00000367925.6:ENST00000367926.9	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	3.94529	4.292875	4.64046	0.0693433	0.00724767	0.184298	0.0756327
chr12	121742528	121742628	5237759	0	+	0.34	(0.32,0.35]	chr12	497202	292	INTRON	INTRON	TMEM120B	ENSG00000188735.13	ENST00000449592.7:ENST00000342607.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	28	2	3.94529	4.292875	4.64046	0.0693433	0.00724767	0.184298	0.0756327
chr15	60375082	60375182	6195098	0	-	0.35	(0.32,0.35]	chr15	590322	4	SS3_PROX	SS3_PROX:INTRON	ANXA2	ENSG00000182718.18	ENST00000396024.7:ENST00000559818.6:ENST00000679109.1:ENST00000676687.1:ENST00000558169.6:ENST00000557906.6:ENST00000558558.6:ENST00000559113.6:ENST00000559780.6:ENST00000559956.6:ENST00000560468.6:ENST00000678870.1:ENST00000678061.1:ENST00000678450.1:ENST00000677968.1:ENST00000451270.7:ENST00000558985.6:ENST00000678796.1:ENST00000559647.2:ENST00000332680.8:ENST00000560014.5:ENST00000504475.6:ENST00000421017.6:ENST00000560466.5:ENST00000558132.5:ENST00000561022.5:ENST00000560367.6:ENST00000558503.6:ENST00000558998.5:ENST00000559559.5:ENST00000560165.5:ENST00000560389.5:ENST00000559725.5:ENST00000559350.5:ENST00000558986.5:ENST00000677258.1:ENST00000559467.5:ENST00000561445.5:ENST00000557937.5:ENST00000557904.5:ENST00000559370.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	28	2	3.94529	4.292875	4.64046	0.0693433	0.00724767	0.184298	0.0756327
chr16	23648275	23648374	6323304	0	+	0.333333	(0.32,0.35]	chr16	605586	49	INTRON	INTRON	DCTN5	ENSG00000166847.10	ENST00000300087.7:ENST00000563998.5:ENST00000566053.5:ENST00000568589.5:ENST00000563188.5:ENST00000568272.1:ENST00000566298.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	28	2	3.94529	4.292875	4.64046	0.0693433	0.00724767	0.184298	0.0756327
chr17	37534886	37534985	6763276	0	-	0.323232	(0.32,0.35]	chr17	665036	47	INTRON	INTRON	SYNRG	ENSG00000275066.5	ENST00000612223.5:ENST00000621136.4:ENST00000616179.4:ENST00000614941.4:ENST00000619541.4:ENST00000622045.4:ENST00000619914.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	28	2	3.94529	4.292875	4.64046	0.0693433	0.00724767	0.184298	0.0756327
chr18	80130508	80130608	6938303	0	+	0.34	(0.32,0.35]	chr18	686196	125	INTRON	INTRON	ADNP2	ENSG00000101544.9	ENST00000262198.9:ENST00000560752.5:ENST00000559951.5:ENST00000560561.1:ENST00000561195.1	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	3.94529	4.292875	4.64046	0.0693433	0.00724767	0.184298	0.0756327
chr21	10445339	10445439	7368448	0	+	0.33	(0.32,0.35]	chr21	751975	301	INTRON	INTRON	BAGE2	ENSG00000187172.15	ENST00000474011.5:ENST00000470054.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	28	2	3.94529	4.292875	4.64046	0.0693433	0.00724767	0.184298	0.0756327
chr21	46338554	46338654	7421361	0	+	0.34	(0.32,0.35]	chr21	756713	34	INTRON	INTRON	PCNT	ENSG00000160299.18	ENST00000466474.6:ENST00000490468.5:ENST00000695525.1:ENST00000695558.1:ENST00000359568.10:ENST00000695526.1:ENST00000480896.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	28	2	3.94529	4.292875	4.64046	0.0693433	0.00724767	0.184298	0.0756327
chr9	91905980	91906080	4284825	0	-	0.34	(0.32,0.35]	chr9	393921	189	INTRON	INTRON	ROR2	ENSG00000169071.15	ENST00000375715.5:ENST00000375708.4:ENST00000495386.5:ENST00000546883.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	28	2	3.94529	4.292875	4.64046	0.0693433	0.00724767	0.184298	0.0756327
chr9	122327769	122327868	4194744	0	+	0.323232	(0.32,0.35]	chr9	382709	53	UTR3	UTR3:EXON_MRNA	MRRF	ENSG00000148187.18	ENST00000344641.8	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	3.94529	4.292875	4.64046	0.0693433	0.00724767	0.184298	0.0756327
chrX	53658717	53658817	7821629	0	-	0.34	(0.32,0.35]	chrX	798234	42	INTRON	INTRON	HUWE1	ENSG00000086758.16	ENST00000262854.11:ENST00000342160.7:ENST00000218328.12:ENST00000446750.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	28	2	3.94529	4.292875	4.64046	0.0693433	0.00724767	0.184298	0.0756327
chr3	33806512	33806611	1394458	0	+	0.40404	(0.378,0.408]	chr3	146021	66	INTRON	INTRON	PDCD6IP	ENSG00000170248.15	ENST00000457054.6:ENST00000648706.1:ENST00000435909.5:ENST00000430877.5:ENST00000413073.1:ENST00000307296.8:ENST00000477798.5:ENST00000498147.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	113	2	2.32375	4.2927	6.26165	0.00134834	1.93011e-5	0.0338207	0.00356593
chr1	23317086	23317186	399313	0	-	0.53	(0.515,0.57]	chr1	47847	30	INTRON	INTRON	HNRNPR	ENSG00000125944.21	ENST00000478691.5:ENST00000302271.11:ENST00000374616.7:ENST00000374612.5:ENST00000675048.1:ENST00000606561.5:ENST00000427764.3:ENST00000463552.5:ENST00000470941.5	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	4.17037	4.292675	4.41498	0.0139194	0.0106866	0.10247	0.0861859
chr1	185098744	185098844	276096	0	+	0.53	(0.515,0.57]	chr1	32287	4	SS5_PROX	SS5_PROX:INTRON	RNF2	ENSG00000121481.11	ENST00000367509.8:ENST00000367510.8	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	4.17037	4.292675	4.41498	0.0139194	0.0106866	0.10247	0.0861859
chr11	46525690	46525789	4946566	0	-	0.525253	(0.515,0.57]	chr11	463481	125	INTRON	INTRON	AMBRA1	ENSG00000110497.15	ENST00000683756.1:ENST00000534300.5:ENST00000533727.5:ENST00000314845.7:ENST00000458649.6:ENST00000528950.1:ENST00000529558.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	25	2	4.17037	4.292675	4.41498	0.0139194	0.0106866	0.10247	0.0861859
chr12	6976714	6976802	5261011	0	-	0.522727	(0.515,0.57]	chr12	501199	7	UTR3	UTR3:EXON_MRNA	LPCAT3	ENSG00000111684.11	ENST00000261407.9:ENST00000535479.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	25	2	4.17037	4.292675	4.41498	0.0139194	0.0106866	0.10247	0.0861859
chr17	30138918	30139018	6587611	0	+	0.53	(0.515,0.57]	chr17	640563	108	INTRON	INTRON	NSRP1	ENSG00000126653.18	ENST00000540900.7:ENST00000612959.4:ENST00000247026.10:ENST00000577289.6:ENST00000584154.5:ENST00000394826.8:ENST00000475652.5:ENST00000584317.5:ENST00000583301.5:ENST00000585881.5:ENST00000467446.6:ENST00000580103.6:ENST00000581048.5:ENST00000588614.1:ENST00000589608.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	25	2	4.17037	4.292675	4.41498	0.0139194	0.0106866	0.10247	0.0861859
chr6	85631186	85631286	3151329	0	-	0.57	(0.515,0.57]	chr6	293889	67	INTRON	INTRON	ENSG00000271793:SYNCRIP	ENSG00000271793.2:ENSG00000135316.19	ENST00000682083.1:ENST00000683074.1:ENST00000681965.1:ENST00000682504.1:ENST00000682106.1:ENST00000683364.1:ENST00000683436.1:ENST00000684220.1:ENST00000683909.1:ENST00000684462.1:ENST00000616122.5:ENST00000678528.1:ENST00000676637.1:ENST00000677771.1:ENST00000355238.11:ENST00000678878.1:ENST00000677481.1:ENST00000677646.1:ENST00000676630.1:ENST00000678618.1:ENST00000676542.1:ENST00000677059.1:ENST00000444272.2:ENST00000678899.1:ENST00000369622.8:ENST00000678355.1:ENST00000676688.1:ENST00000677514.1:ENST00000678816.1:ENST00000678930.1:ENST00000678589.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	25	2	4.17037	4.292675	4.41498	0.0139194	0.0106866	0.10247	0.0861859
chr7	99410465	99410563	3361744	0	+	0.520408	(0.515,0.57]	chr7	313926	3	SS5_PROX	SS5_PROX:INTRON	BUD31	ENSG00000106245.11	ENST00000403633.6:ENST00000427499.5:ENST00000222969.10:ENST00000496696.5:ENST00000473447.1:ENST00000471813.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	25	2	4.17037	4.292675	4.41498	0.0139194	0.0106866	0.10247	0.0861859
chr9	122883977	122884076	4338415	0	-	0.535354	(0.515,0.57]	chr9	398771	2	INTRON	INTRON	RC3H2	ENSG00000056586.16	ENST00000357244.7:ENST00000373670.5:ENST00000498479.5:ENST00000423239.6:ENST00000335387.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	25	2	4.17037	4.292675	4.41498	0.0139194	0.0106866	0.10247	0.0861859
chr9	137105311	137105410	4222841	0	+	0.565657	(0.515,0.57]	chr9	387932	38	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	MAN1B1	ENSG00000177239.16	ENST00000682881.1:ENST00000683324.1:ENST00000684138.1:ENST00000683135.1:ENST00000542372.2:ENST00000371587.9:ENST00000684366.1:ENST00000684229.1:ENST00000683355.1:ENST00000682117.1:ENST00000683475.1:ENST00000682425.1:ENST00000684645.1:ENST00000683979.1:ENST00000371589.9:ENST00000535144.6:ENST00000684272.1:ENST00000475449.7:ENST00000684759.1:ENST00000545539.6:ENST00000684144.1:ENST00000683987.1:ENST00000682212.1:ENST00000544448.6:ENST00000684297.1:ENST00000474902.5:ENST00000682964.1:ENST00000535028.6:ENST00000536349.6:ENST00000684336.1:ENST00000540391.5:ENST00000480100.3:ENST00000682502.1:ENST00000536268.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	25	2	4.17037	4.292675	4.41498	0.0139194	0.0106866	0.10247	0.0861859
chr1	184857889	184857989	601881	0	-	0.25	[0,0.28]	chr1	71742	256	INTRON	INTRON	NIBAN1	ENSG00000135842.17	ENST00000367511.4:ENST00000487074.5:ENST00000461167.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	29	2	4.20106	4.29241	4.38376	0.0695895	0.0258536	0.184298	0.133676
chr10	60159600	60159700	4625266	0	-	0.28	[0,0.28]	chr10	425862	132	INTRON	INTRON	ANK3	ENSG00000151150.22	ENST00000280772.7:ENST00000373827.6:ENST00000503366.5:ENST00000622427.4:ENST00000474360.1:ENST00000460468.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	29	2	4.20106	4.29241	4.38376	0.0695895	0.0258536	0.184298	0.133676
chr12	64441599	64441698	5153281	0	+	0.222222	[0,0.28]	chr12	487839	19	INTRON	INTRON	XPOT	ENSG00000184575.12	ENST00000332707.10	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	4.20106	4.29241	4.38376	0.0695895	0.0258536	0.184298	0.133676
chr12	91454743	91454843	5383763	0	-	0.26	[0,0.28]	chr12	513479	550	INTRON	INTRON	ENSG00000289605	ENSG00000289605.1	ENST00000685093.1	lncRNA	lncRNA	lncRNA	lncRNA	0	29	2	4.20106	4.29241	4.38376	0.0695895	0.0258536	0.184298	0.133676
chr13	46706502	46706601	5483031	0	+	0.262626	[0,0.28]	chr13	525308	8	INTRON	INTRON	LRCH1	ENSG00000136141.15	ENST00000311191.10:ENST00000389797.8:ENST00000389798.7	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	4.20106	4.29241	4.38376	0.0695895	0.0258536	0.184298	0.133676
chr14	103665121	103665221	5828010	0	+	0.25	[0,0.28]	chr14	553079	18	INTRON	INTRON	KLC1	ENSG00000126214.22	ENST00000348520.10:ENST00000380038.7:ENST00000334553.11:ENST00000389744.8:ENST00000555836.5:ENST00000347839.10:ENST00000553286.5:ENST00000557575.5:ENST00000452929.6:ENST00000554280.5:ENST00000557450.5:ENST00000554228.5:ENST00000634686.1:ENST00000246489.11:ENST00000445352.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	29	2	4.20106	4.29241	4.38376	0.0695895	0.0258536	0.184298	0.133676
chr15	36718754	36718854	5997418	0	+	0.21	[0,0.28]	chr15	570168	84	INTRON	INTRON	CDIN1	ENSG00000186073.14	ENST00000566621.6:ENST00000570265.6:ENST00000569302.6:ENST00000642817.1:ENST00000646533.1:ENST00000646657.1:ENST00000437989.6:ENST00000643612.1:ENST00000567389.5:ENST00000562877.5:ENST00000338183.8:ENST00000565792.5:ENST00000562489.1:ENST00000566932.5:ENST00000566677.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	29	2	4.20106	4.29241	4.38376	0.0695895	0.0258536	0.184298	0.133676
chr17	45636775	45636873	6618295	0	+	0.22449	[0,0.28]	chr17	645450	6	EXON_LNCRNA	EXON_LNCRNA:INTRON	LINC02210	ENSG00000204650.14	ENST00000591271.5:ENST00000455565.5	transcribed_unitary_pseudogene	processed_transcript	transcribed_unitary_pseudogene	processed_transcript	0	29	2	4.20106	4.29241	4.38376	0.0695895	0.0258536	0.184298	0.133676
chr18	2756220	2756320	6865912	0	+	0.27	[0,0.28]	chr18	680132	2	SS3_PROX	SS3_PROX:INTRON	SMCHD1	ENSG00000101596.17	ENST00000320876.11:ENST00000688342.1:ENST00000693213.1:ENST00000577880.5:ENST00000584897.5:ENST00000690757.1:ENST00000686763.1:ENST00000686864.1:ENST00000688708.1:ENST00000645355.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	29	2	4.20106	4.29241	4.38376	0.0695895	0.0258536	0.184298	0.133676
chr2	9518247	9518347	1064097	0	-	0.23	[0,0.28]	chr2	113496	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	ADAM17	ENSG00000151694.14	ENST00000310823.8:ENST00000648548.1:ENST00000649227.1:ENST00000648857.1:ENST00000647979.1:ENST00000647610.1:ENST00000650116.1:ENST00000649686.1:ENST00000647622.1:ENST00000649972.1:ENST00000650241.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	29	2	4.20106	4.29241	4.38376	0.0695895	0.0258536	0.184298	0.133676
chr20	34397920	34398019	7259459	0	+	0.242424	[0,0.28]	chr20	737425	2	INTRON	INTRON	ITCH	ENSG00000078747.16	ENST00000486883.5:ENST00000374864.10:ENST00000535650.7:ENST00000670516.1:ENST00000658310.1:ENST00000665484.1:ENST00000664852.1:ENST00000660337.1:ENST00000665428.1:ENST00000654846.1:ENST00000262650.10:ENST00000662871.1:ENST00000665346.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	29	2	4.20106	4.29241	4.38376	0.0695895	0.0258536	0.184298	0.133676
chr3	138202820	138202920	1514107	0	+	0.27	[0,0.28]	chr3	158295	139	INTRON	INTRON	ARMC8	ENSG00000114098.18	ENST00000538260.5:ENST00000481646.5:ENST00000469044.6:ENST00000491704.5:ENST00000461600.5:ENST00000466749.5:ENST00000358441.6:ENST00000489213.5:ENST00000461822.5:ENST00000485396.5:ENST00000471453.5:ENST00000470821.5:ENST00000471709.5:ENST00000463485.5:ENST00000468560.1	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	4.20106	4.29241	4.38376	0.0695895	0.0258536	0.184298	0.133676
chr4	25365640	25365735	1933904	0	+	0.252632	[0,0.28]	chr4	194169	6	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	ZCCHC4	ENSG00000168228.16	ENST00000302874.9:ENST00000507760.5:ENST00000505412.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	29	2	4.20106	4.29241	4.38376	0.0695895	0.0258536	0.184298	0.133676
chr7	10575870	10575970	3482538	0	-	0.25	[0,0.28]	chr7	325772	139	INTRON	INTRON	MGC4859	ENSG00000283117.1	ENST00000634803.1	lncRNA	lncRNA	lncRNA	lncRNA	0	29	2	4.20106	4.29241	4.38376	0.0695895	0.0258536	0.184298	0.133676
chr7	135488984	135489084	3648750	0	-	0.2	[0,0.28]	chr7	339187	502	INTRON	INTRON	CNOT4	ENSG00000080802.20	ENST00000541284.6:ENST00000451834.5:ENST00000423368.6:ENST00000361528.8:ENST00000428680.6:ENST00000315544.6:ENST00000491203.5:ENST00000498534.5:ENST00000465721.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	29	2	4.20106	4.29241	4.38376	0.0695895	0.0258536	0.184298	0.133676
chr9	112306496	112306596	4317689	0	-	0.23	[0,0.28]	chr9	397079	82	INTRON	INTRON	PTBP3	ENSG00000119314.16	ENST00000334318.10:ENST00000458258.5:ENST00000374257.6:ENST00000374255.6:ENST00000343327.6:ENST00000487997.1:ENST00000210227.4:ENST00000450374.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	29	2	4.20106	4.29241	4.38376	0.0695895	0.0258536	0.184298	0.133676
chrX	31861131	31861231	7786859	0	-	0.26	[0,0.28]	chrX	795166	240	INTRON	INTRON	DMD	ENSG00000198947.18	ENST00000358062.6:ENST00000357033.9:ENST00000619831.5:ENST00000378677.6:ENST00000359836.5:ENST00000378707.7:ENST00000541735.5:ENST00000684130.1:ENST00000680961.1:ENST00000682238.1:ENST00000620040.5:ENST00000474231.5:ENST00000683957.1:ENST00000681646.1:ENST00000683450.1:ENST00000683851.1:ENST00000683117.1:ENST00000681839.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	29	2	4.20106	4.29241	4.38376	0.0695895	0.0258536	0.184298	0.133676
chr1	180110796	180110896	269046	0	+	0.26	[0,0.28]	chr1	31533	4	SS3_PROX	SS3_PROX:INTRON	CEP350	ENSG00000135837.16	ENST00000367607.8:ENST00000429851.5:ENST00000490141.5:ENST00000417046.1:ENST00000496440.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	29	2	4.28915	4.292255	4.29536	0.0590175	0.0319595	0.167915	0.14477
chr11	102368848	102368948	4855381	0	+	0.24	[0,0.28]	chr11	452808	3	SS5_PROX	SS5_PROX:INTRON	BIRC2	ENSG00000110330.10	ENST00000227758.7:ENST00000530675.5:ENST00000533742.5:ENST00000532672.5:ENST00000531259.5:ENST00000527910.5:ENST00000613397.4:ENST00000534130.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	29	2	4.28915	4.292255	4.29536	0.0590175	0.0319595	0.167915	0.14477
chr12	93489960	93490059	5189482	0	+	0.242424	[0,0.28]	chr12	490858	16	INTRON	INTRON	MRPL42	ENSG00000198015.14	ENST00000549982.6:ENST00000552217.6:ENST00000393128.8:ENST00000552326.5:ENST00000358678.7:ENST00000551396.5:ENST00000549561.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	29	2	4.28915	4.292255	4.29536	0.0590175	0.0319595	0.167915	0.14477
chr12	94447491	94447591	5389990	0	-	0.27	[0,0.28]	chr12	513890	118	INTRON	INTRON	CEP83	ENSG00000173588.16	ENST00000397809.10:ENST00000339839.9:ENST00000547232.5:ENST00000547575.5:ENST00000546527.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	29	2	4.28915	4.292255	4.29536	0.0590175	0.0319595	0.167915	0.14477
chr18	31843036	31843135	6960365	0	-	0.232323	[0,0.28]	chr18	688646	32	INTRON	INTRON	TRAPPC8	ENSG00000153339.15	ENST00000283351.10:ENST00000580104.5:ENST00000582539.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	29	2	4.28915	4.292255	4.29536	0.0590175	0.0319595	0.167915	0.14477
chr2	135846986	135847080	1233581	0	-	0.212766	[0,0.28]	chr2	131269	2	INTRON	INTRON	MCM6	ENSG00000076003.5	ENST00000264156.3:ENST00000492091.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	29	2	4.28915	4.292255	4.29536	0.0590175	0.0319595	0.167915	0.14477
chr2	200576959	200577058	980463	0	+	0.262626	[0,0.28]	chr2	105187	11	INTRON	INTRON	SGO2	ENSG00000163535.18	ENST00000357799.9	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	4.28915	4.292255	4.29536	0.0590175	0.0319595	0.167915	0.14477
chr2	208285027	208285126	992192	0	+	0.232323	[0,0.28]	chr2	106617	70	INTRON	INTRON	PIKFYVE	ENSG00000115020.17	ENST00000264380.9:ENST00000443896.5:ENST00000392202.7:ENST00000407449.5:ENST00000308862.10:ENST00000422495.5:ENST00000452564.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	29	2	4.28915	4.292255	4.29536	0.0590175	0.0319595	0.167915	0.14477
chr20	35373284	35373384	7334810	0	-	0.27	[0,0.28]	chr20	747153	63	INTRON	INTRON	UQCC1	ENSG00000101019.22	ENST00000374380.6:ENST00000374394.7:ENST00000374384.6:ENST00000359226.6:ENST00000349714.9:ENST00000457259.5:ENST00000374385.10:ENST00000453855.5:ENST00000397556.7:ENST00000424405.5:ENST00000443429.5:ENST00000438533.5:ENST00000397554.5:ENST00000491125.5:ENST00000491040.5:ENST00000397553.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	29	2	4.28915	4.292255	4.29536	0.0590175	0.0319595	0.167915	0.14477
chr4	6816192	6816292	1921923	0	+	0.27	[0,0.28]	chr4	192991	112	INTRON	INTRON	KIAA0232	ENSG00000170871.12	ENST00000503278.1:ENST00000508423.1:ENST00000307659.6:ENST00000425103.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	29	2	4.28915	4.292255	4.29536	0.0590175	0.0319595	0.167915	0.14477
chr4	183273229	183273328	2085542	0	+	0.20202	[0,0.28]	chr4	206062	16	INTRON	INTRON	WWC2	ENSG00000151718.16	ENST00000403733.8:ENST00000448232.6:ENST00000513834.5:ENST00000427431.5:ENST00000438543.5:ENST00000504005.5:ENST00000515284.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	29	2	4.28915	4.292255	4.29536	0.0590175	0.0319595	0.167915	0.14477
chr5	55338716	55338815	2355399	0	+	0.272727	[0,0.28]	chr5	227152	95	INTRON	INTRON	MTREX	ENSG00000039123.16	ENST00000230640.10:ENST00000506750.5:ENST00000504997.1:ENST00000505565.5:ENST00000502953.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	29	2	4.28915	4.292255	4.29536	0.0590175	0.0319595	0.167915	0.14477
chr5	78431250	78431350	2397296	0	+	0.28	[0,0.28]	chr5	231579	89	INTRON	INTRON	SCAMP1	ENSG00000085365.18	ENST00000614488.4:ENST00000618166.4:ENST00000621999.5:ENST00000320280.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	29	2	4.28915	4.292255	4.29536	0.0590175	0.0319595	0.167915	0.14477
chr5	105385060	105385160	2696277	0	-	0.27	[0,0.28]	chr5	254248	1388	INTRON	INTRON	ENSG00000251574	ENSG00000251574.8	ENST00000503650.1	lncRNA	lncRNA	lncRNA	lncRNA	0	29	2	4.28915	4.292255	4.29536	0.0590175	0.0319595	0.167915	0.14477
chr6	17934028	17934128	3068016	0	-	0.23	[0,0.28]	chr6	285100	355	INTRON	INTRON	KIF13A	ENSG00000137177.20	ENST00000378814.9:ENST00000259711.11:ENST00000378826.6:ENST00000378843.6:ENST00000636847.1:ENST00000507576.1:ENST00000505588.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	29	2	4.28915	4.292255	4.29536	0.0590175	0.0319595	0.167915	0.14477
chr6	37469334	37469433	2856876	0	+	0.272727	[0,0.28]	chr6	270152	60	INTRON	INTRON	CMTR1	ENSG00000137200.13	ENST00000373451.9	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	4.28915	4.292255	4.29536	0.0590175	0.0319595	0.167915	0.14477
chr6	87523095	87523191	3151945	0	-	0.25	[0,0.28]	chr6	293990	9	INTRON	INTRON	RARS2	ENSG00000146282.19	ENST00000691533.1:ENST00000493269.2:ENST00000685069.1:ENST00000691725.1:ENST00000369536.10:ENST00000693431.1:ENST00000685408.1:ENST00000693327.1:ENST00000691205.1:ENST00000689174.1:ENST00000692684.1:ENST00000686988.1:ENST00000690622.1:ENST00000689206.1:ENST00000688532.1:ENST00000686154.1:ENST00000686407.1:ENST00000685701.1:ENST00000689561.1:ENST00000691238.1:ENST00000685336.1:ENST00000686284.1:ENST00000687586.1:ENST00000685376.1:ENST00000691634.1:ENST00000685881.1:ENST00000691815.1:ENST00000687090.1:ENST00000451155.2:ENST00000687437.1:ENST00000692394.1:ENST00000687729.1:ENST00000693605.1:ENST00000687909.1:ENST00000688391.1:ENST00000690884.1:ENST00000692843.1:ENST00000684790.1:ENST00000692270.1:ENST00000685219.1:ENST00000689952.1:ENST00000687579.1:ENST00000686857.1:ENST00000690205.1:ENST00000690705.1:ENST00000686371.1:ENST00000686142.1:ENST00000688106.1:ENST00000686196.1:ENST00000688842.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	29	2	4.28915	4.292255	4.29536	0.0590175	0.0319595	0.167915	0.14477
chr6	88895014	88895114	3158450	0	-	0.2	[0,0.28]	chr6	294227	27	INTRON	INTRON	RNGTT	ENSG00000111880.16	ENST00000369485.9:ENST00000369475.7:ENST00000627296.1:ENST00000538899.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	29	2	4.28915	4.292255	4.29536	0.0590175	0.0319595	0.167915	0.14477
chr6	105013313	105013413	2930414	0	+	0.26	[0,0.28]	chr6	276110	547	INTRON	INTRON	LIN28B	ENSG00000187772.8	ENST00000635857.1:ENST00000637759.1:ENST00000345080.5	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	4.28915	4.292255	4.29536	0.0590175	0.0319595	0.167915	0.14477
chr7	103102045	103102144	3592418	0	-	0.252525	[0,0.28]	chr7	335278	24	UTR3	UTR3:EXON_MRNA:INTRON	NAPEPLD	ENSG00000161048.12	ENST00000341533.8:ENST00000465647.6:ENST00000414118.2:ENST00000417955.5:ENST00000422589.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	29	2	4.28915	4.292255	4.29536	0.0590175	0.0319595	0.167915	0.14477
chr8	6741751	6741851	3695340	0	+	0.24	[0,0.28]	chr8	342855	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	AGPAT5	ENSG00000155189.12	ENST00000285518.11:ENST00000523234.5:ENST00000518327.1:ENST00000530716.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	29	2	4.28915	4.292255	4.29536	0.0590175	0.0319595	0.167915	0.14477
chr8	67318964	67319064	3963572	0	-	0.22	[0,0.28]	chr8	363741	161	INTRON	INTRON	ARFGEF1	ENSG00000066777.9	ENST00000262215.8:ENST00000519436.1	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	4.28915	4.292255	4.29536	0.0590175	0.0319595	0.167915	0.14477
chr9	40995996	40996096	4123542	0	+	0.26	[0,0.28]	chr9	375956	9	INTRON	INTRON	FRG1HP	ENSG00000276291.6	ENST00000690347.1:ENST00000686028.1:ENST00000688017.1:ENST00000610803.5:ENST00000692434.1:ENST00000687775.1:ENST00000611606.5:ENST00000615326.5:ENST00000690313.1:ENST00000618340.5:ENST00000693485.1:ENST00000686736.1:ENST00000689683.1:ENST00000617940.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	29	2	4.28915	4.292255	4.29536	0.0590175	0.0319595	0.167915	0.14477
chr9	95171438	95171536	4290564	0	-	0.234694	[0,0.28]	chr9	394716	3	SS3_PROX	SS3_PROX:INTRON	FANCC	ENSG00000158169.14	ENST00000289081.8:ENST00000375305.6:ENST00000649334.1:ENST00000490972.7:ENST00000649701.1:ENST00000696261.1:ENST00000636777.1:ENST00000474949.1:ENST00000647778.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	29	2	4.28915	4.292255	4.29536	0.0590175	0.0319595	0.167915	0.14477
chr9	125337791	125337891	4199038	0	+	0.24	[0,0.28]	chr9	383252	2	SS5_PROX	SS5_PROX:INTRON	GAPVD1	ENSG00000165219.23	ENST00000497580.5:ENST00000297933.11:ENST00000470056.5:ENST00000394105.6:ENST00000394083.6:ENST00000495955.5:ENST00000467750.5:ENST00000394104.6:ENST00000312123.13:ENST00000431329.5:ENST00000436712.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	29	2	4.28915	4.292255	4.29536	0.0590175	0.0319595	0.167915	0.14477
chr4	139389084	139389184	2050592	0	+	0.35	(0.32,0.35]	chr4	203405	11	UTR3	UTR3:EXON_MRNA:INTRON	NAA15	ENSG00000164134.13	ENST00000296543.10:ENST00000398947.1:ENST00000515576.1	protein_coding	protein_coding	protein_coding	protein_coding	1	66	2	3.35116	4.292215000000001	5.23327	0.00283808	9.33826e-4	0.0473151	0.0278746
chr1	27796314	27796414	54741	0	+	0.37	(0.35,0.378]	chr1	7062	23	INTRON	INTRON	STX12	ENSG00000117758.14	ENST00000373943.9:ENST00000440806.2:ENST00000468761.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	27	2	4.08816	4.292210000000001	4.49626	0.046021	0.00917582	0.149888	0.0855292
chr1	156234422	156234520	231117	0	+	0.357143	(0.35,0.378]	chr1	27294	3	INTRON	INTRON	PMF1	ENSG00000160783.19	ENST00000368279.7:ENST00000368273.8:ENST00000368277.3:ENST00000606952.5:ENST00000497069.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	27	2	4.08816	4.292210000000001	4.49626	0.046021	0.00917582	0.149888	0.0855292
chr14	77559523	77559622	5927567	0	-	0.363636	(0.35,0.378]	chr14	563704	20	INTRON	INTRON	SPTLC2	ENSG00000100596.8	ENST00000216484.7:ENST00000692906.1:ENST00000687688.1:ENST00000554901.1:ENST00000691887.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	27	2	4.08816	4.292210000000001	4.49626	0.046021	0.00917582	0.149888	0.0855292
chr2	39302573	39302673	1102931	0	-	0.37	(0.35,0.378]	chr2	118421	1	SS5_PROX	SS5_PROX:INTRON	MAP4K3	ENSG00000011566.15	ENST00000263881.8:ENST00000437545.5:ENST00000341681.9:ENST00000497566.5:ENST00000414968.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	27	2	4.08816	4.292210000000001	4.49626	0.046021	0.00917582	0.149888	0.0855292
chr20	49688986	49689086	7353379	0	-	0.36	(0.35,0.378]	chr20	749846	319	INTRON	INTRON	B4GALT5	ENSG00000158470.5	ENST00000371711.4	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.08816	4.292210000000001	4.49626	0.046021	0.00917582	0.149888	0.0855292
chr3	9799378	9799478	1360983	0	+	0.37	(0.35,0.378]	chr3	143094	1	SS3_PROX	SS3_PROX:INTRON	ARPC4:ARPC4-TTLL3	ENSG00000241553.13:ENSG00000250151.9	ENST00000498623.6:ENST00000424442.5:ENST00000418163.5:ENST00000397261.8:ENST00000417500.5:ENST00000440787.5:ENST00000467289.5:ENST00000485273.1:ENST00000397256.5:ENST00000433034.1:ENST00000453882.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	27	2	4.08816	4.292210000000001	4.49626	0.046021	0.00917582	0.149888	0.0855292
chr5	37518389	37518489	2341787	0	+	0.37	(0.35,0.378]	chr5	226254	14	INTRON	INTRON	WDR70	ENSG00000082068.9	ENST00000504564.1:ENST00000511906.5:ENST00000265107.9:ENST00000510699.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	27	2	4.08816	4.292210000000001	4.49626	0.046021	0.00917582	0.149888	0.0855292
chr5	177175837	177175937	2554121	0	+	0.36	(0.35,0.378]	chr5	243933	58	INTRON	INTRON	NSD1	ENSG00000165671.22	ENST00000508896.6:ENST00000689549.1:ENST00000354179.9:ENST00000686993.1:ENST00000689326.1:ENST00000439151.7:ENST00000510954.6:ENST00000689345.1:ENST00000347982.9:ENST00000687453.1:ENST00000685206.1:ENST00000638627.3:ENST00000644863.2:ENST00000688613.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	27	2	4.08816	4.292210000000001	4.49626	0.046021	0.00917582	0.149888	0.0855292
chr6	152848124	152848224	3249265	0	-	0.36	(0.35,0.378]	chr6	301922	158	INTRON	INTRON	LINC02840	ENSG00000224893.7	ENST00000666093.1:ENST00000656248.1:ENST00000657202.1:ENST00000659837.1:ENST00000654424.1:ENST00000670414.1:ENST00000671138.1:ENST00000658966.1:ENST00000667732.1:ENST00000652681.1	lncRNA	lncRNA	lncRNA	lncRNA	0	27	2	4.08816	4.292210000000001	4.49626	0.046021	0.00917582	0.149888	0.0855292
chr7	64695990	64696088	3320185	0	+	0.377551	(0.35,0.378]	chr7	308689	37	INTRON	INTRON	ZNF107	ENSG00000196247.13	ENST00000395391.2:ENST00000684016.1:ENST00000620827.6:ENST00000423627.6:ENST00000613690.5:ENST00000344930.7:ENST00000682671.1:ENST00000683971.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	27	2	4.08816	4.292210000000001	4.49626	0.046021	0.00917582	0.149888	0.0855292
chr2	15389669	15389769	1071422	0	-	0.34	(0.32,0.35]	chr2	114321	60	INTRON	INTRON	NBAS	ENSG00000151779.13	ENST00000281513.10:ENST00000442506.5:ENST00000441755.5	protein_coding	protein_coding	protein_coding	protein_coding	2	80	2	2.99495	4.29209	5.58923	0.00102621	8.12357e-4	0.0294094	0.0263656
chr9	4801705	4801804	4094953	0	+	0.333333	(0.32,0.35]	chr9	373155	81	INTRON	INTRON	RCL1	ENSG00000120158.12	ENST00000381750.9:ENST00000381732.3:ENST00000442869.5:ENST00000473230.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	80	2	2.99495	4.29209	5.58923	0.00102621	8.12357e-4	0.0294094	0.0263656
chr16	336158	336258	6426691	0	-	0.5	(0.476,0.515]	chr16	617500	211	INTRON	INTRON	AXIN1	ENSG00000103126.15	ENST00000262320.8:ENST00000461023.5:ENST00000354866.7:ENST00000481769.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	58	2	2.99852	4.291985	5.58545	0.0077575	1.04881e-4	0.0757402	0.00863456
chr1	154256662	154256762	227904	0	+	0.37	(0.35,0.378]	chr1	26324	2	SS3_PROX	SS3_PROX:INTRON	UBAP2L	ENSG00000143569.19	ENST00000343815.10:ENST00000271877.11:ENST00000613315.4:ENST00000428931.6:ENST00000361546.6:ENST00000495676.5:ENST00000489076.1:ENST00000433615.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	59	2	2.92952	4.291845	5.65417	0.00881187	4.33402e-4	0.084878	0.0190829
chr3	185823997	185824092	1886343	0	-	0.568421	(0.515,0.57]	chr3	188589	4	INTRON	INTRON	IGF2BP2	ENSG00000073792.16	ENST00000382199.7:ENST00000346192.7:ENST00000457616.6:ENST00000466476.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	51	2	3.67453	4.291824999999999	4.90912	0.0021669	3.27949e-4	0.0417866	0.0160995
chr1	26844707	26844807	52394	0	+	0.34	(0.32,0.35]	chr1	6697	117	INTRON	INTRON	ZDHHC18	ENSG00000204160.12	ENST00000374142.9:ENST00000374141.6:ENST00000534643.5	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.04364	4.29176	4.53988	0.034181	0.0202178	0.146815	0.109913
chr1	173472837	173472937	586562	0	-	0.34	(0.32,0.35]	chr1	70584	116	INTRON	INTRON	PRDX6-AS1	ENSG00000203739.5	ENST00000669220.1:ENST00000661267.1:ENST00000660739.1:ENST00000659863.1	lncRNA	lncRNA	lncRNA	lncRNA	0	28	2	4.04364	4.29176	4.53988	0.034181	0.0202178	0.146815	0.109913
chr10	86497819	86497918	4659124	0	-	0.323232	(0.32,0.35]	chr10	429288	1	INTRON	INTRON	WAPL	ENSG00000062650.20	ENST00000298767.10	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.04364	4.29176	4.53988	0.034181	0.0202178	0.146815	0.109913
chr2	11252394	11252494	1067751	0	-	0.33	(0.32,0.35]	chr2	114079	22	INTRON	INTRON	ROCK2	ENSG00000134318.15	ENST00000315872.11:ENST00000261535.7:ENST00000431087.1:ENST00000462366.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	28	2	4.04364	4.29176	4.53988	0.034181	0.0202178	0.146815	0.109913
chr3	61017853	61017953	1719797	0	-	0.33	(0.32,0.35]	chr3	176157	1955	INTRON	INTRON	FHIT	ENSG00000189283.10	ENST00000492590.6:ENST00000476844.5:ENST00000468189.5:ENST00000488467.5:ENST00000490952.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	28	2	4.04364	4.29176	4.53988	0.034181	0.0202178	0.146815	0.109913
chr5	289011	289110	2312794	0	+	0.343434	(0.32,0.35]	chr5	223715	122	INTRON	INTRON	PDCD6	ENSG00000249915.9	ENST00000614778.4:ENST00000618970.4:ENST00000513582.5:ENST00000264933.9:ENST00000505221.5:ENST00000507528.5:ENST00000505526.1:ENST00000507473.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	28	2	4.04364	4.29176	4.53988	0.034181	0.0202178	0.146815	0.109913
chr6	143077392	143077491	2975348	0	+	0.343434	(0.32,0.35]	chr6	279132	159	INTRON	INTRON	AIG1	ENSG00000146416.19	ENST00000367601.8:ENST00000447498.5:ENST00000646199.1:ENST00000357847.9:ENST00000629020.2:ENST00000275235.8:ENST00000494282.6	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.04364	4.29176	4.53988	0.034181	0.0202178	0.146815	0.109913
chr8	10788524	10788624	3908006	0	-	0.33	(0.32,0.35]	chr8	358079	3	INTRON	INTRON	PINX1	ENSG00000254093.9	ENST00000314787.8:ENST00000519088.5:ENST00000524114.5:ENST00000523559.1:ENST00000524061.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	28	2	4.04364	4.29176	4.53988	0.034181	0.0202178	0.146815	0.109913
chr8	125097126	125097226	3853530	0	+	0.33	(0.32,0.35]	chr8	355199	22	INTRON	INTRON	NSMCE2	ENSG00000156831.8	ENST00000523741.5:ENST00000517532.5:ENST00000520866.5:ENST00000519010.5:ENST00000287437.8:ENST00000518013.5:ENST00000522563.5:ENST00000523824.5:ENST00000518146.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	28	2	4.04364	4.29176	4.53988	0.034181	0.0202178	0.146815	0.109913
chr8	132800947	132801046	3865430	0	+	0.323232	(0.32,0.35]	chr8	355835	11	INTRON	INTRON	PHF20L1	ENSG00000129292.21	ENST00000622263.4:ENST00000220847.8:ENST00000395383.5:ENST00000361997.9:ENST00000395379.5:ENST00000395386.7:ENST00000315808.14:ENST00000337920.8:ENST00000395376.5:ENST00000395390.6:ENST00000486199.5:ENST00000521038.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	28	2	4.04364	4.29176	4.53988	0.034181	0.0202178	0.146815	0.109913
chr2	202295837	202295937	985229	0	+	0.3	(0.28,0.32]	chr2	105767	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	NOP58	ENSG00000055044.11	ENST00000264279.10:ENST00000433543.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	112	2	2.4323	4.29166	6.15102	0.00540168	2.27393e-5	0.0644179	0.00372337
chr1	38020558	38020654	74350	0	+	0.354167	(0.35,0.378]	chr1	9612	8	INTRON	INTRON	UTP11	ENSG00000183520.12	ENST00000373014.5:ENST00000488453.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	27	2	4.19022	4.291625	4.39303	0.0237246	0.0209891	0.122348	0.118716
chr1	50593340	50593439	448577	0	-	0.353535	(0.35,0.378]	chr1	54213	82	INTRON	INTRON	FAF1	ENSG00000185104.21	ENST00000396153.7:ENST00000494400.5:ENST00000472808.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	27	2	4.19022	4.291625	4.39303	0.0237246	0.0209891	0.122348	0.118716
chr1	145936209	145936309	540843	0	-	0.36	(0.35,0.378]	chr1	63432	29	UTR3	UTR3:EXON_MRNA	LIX1L	ENSG00000271601.4	ENST00000604000.4	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.19022	4.291625	4.39303	0.0237246	0.0209891	0.122348	0.118716
chr12	28404574	28404674	5102432	0	+	0.36	(0.35,0.378]	chr12	481982	128	INTRON	INTRON	CCDC91	ENSG00000123106.11	ENST00000540794.5:ENST00000536154.5:ENST00000535520.5:ENST00000539107.5:ENST00000545336.5:ENST00000536442.6:ENST00000543809.5:ENST00000545737.5:ENST00000381259.5:ENST00000540401.5:ENST00000539904.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	27	2	4.19022	4.291625	4.39303	0.0237246	0.0209891	0.122348	0.118716
chr12	113365242	113365341	5232410	0	+	0.353535	(0.35,0.378]	chr12	496272	60	INTRON	INTRON	PLBD2	ENSG00000151176.8	ENST00000545182.6:ENST00000280800.5:ENST00000548997.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	27	2	4.19022	4.291625	4.39303	0.0237246	0.0209891	0.122348	0.118716
chr13	27147692	27147792	5566325	0	-	0.36	(0.35,0.378]	chr13	532032	307	INTRON	INTRON	USP12	ENSG00000152484.14	ENST00000282344.11	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.19022	4.291625	4.39303	0.0237246	0.0209891	0.122348	0.118716
chr14	61051786	61051858	5739817	0	+	0.361111	(0.35,0.378]	chr14	545038	1	CDS	CDS:UTR3:EXON_MRNA	SLC38A6	ENSG00000139974.16	ENST00000354886.6:ENST00000525723.6:ENST00000267488.9:ENST00000491344.7:ENST00000451406.5:ENST00000527591.5:ENST00000529345.6:ENST00000529212.1:ENST00000526539.2:ENST00000556938.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	27	2	4.19022	4.291625	4.39303	0.0237246	0.0209891	0.122348	0.118716
chr15	25334513	25334612	6120762	0	-	0.353535	(0.35,0.378]	chr15	582827	9	UTR3	UTR3:EXON_MRNA	UBE3A	ENSG00000114062.22	ENST00000648336.2:ENST00000438097.6:ENST00000635914.1:ENST00000638155.1:ENST00000637886.1:ENST00000638011.1:ENST00000636667.1	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.19022	4.291625	4.39303	0.0237246	0.0209891	0.122348	0.118716
chr17	49833442	49833541	6625785	0	+	0.373737	(0.35,0.378]	chr17	646809	61	UTR3	UTR3:EXON_MRNA	KAT7	ENSG00000136504.13	ENST00000259021.9	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.19022	4.291625	4.39303	0.0237246	0.0209891	0.122348	0.118716
chr17	80576659	80576759	6685103	0	+	0.37	(0.35,0.378]	chr17	653399	305	INTRON	INTRON	RPTOR	ENSG00000141564.15	ENST00000574767.5:ENST00000577161.5:ENST00000306801.8:ENST00000649732.1:ENST00000570891.5:ENST00000544334.6:ENST00000573746.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	27	2	4.19022	4.291625	4.39303	0.0237246	0.0209891	0.122348	0.118716
chr18	13757942	13758042	6878300	0	+	0.37	(0.35,0.378]	chr18	681663	34	INTRON	INTRON	RNMT	ENSG00000101654.18	ENST00000543302.6:ENST00000588457.5:ENST00000383314.7:ENST00000592764.5:ENST00000589866.5:ENST00000262173.7:ENST00000593007.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	27	2	4.19022	4.291625	4.39303	0.0237246	0.0209891	0.122348	0.118716
chr18	35241502	35241596	6889357	0	+	0.351064	(0.35,0.378]	chr18	682769	6	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	ZNF397	ENSG00000186812.13	ENST00000589630.1:ENST00000330501.12:ENST00000601719.1:ENST00000591206.5:ENST00000589420.1:ENST00000355632.8:ENST00000261333.10:ENST00000585800.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	27	2	4.19022	4.291625	4.39303	0.0237246	0.0209891	0.122348	0.118716
chr2	70234002	70234100	1152321	0	-	0.377551	(0.35,0.378]	chr2	123102	28	INTRON	INTRON	C2orf42:TIA1	ENSG00000115998.8:ENSG00000116001.17	ENST00000470096.1:ENST00000415783.6:ENST00000433529.7:ENST00000282574.8:ENST00000445587.5:ENST00000416149.6:ENST00000474809.6:ENST00000477044.6:ENST00000361692.4:ENST00000496452.5:ENST00000481650.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	27	2	4.19022	4.291625	4.39303	0.0237246	0.0209891	0.122348	0.118716
chr21	36864365	36864465	7460537	0	-	0.36	(0.35,0.378]	chr21	760114	967	INTRON	INTRON	HLCS	ENSG00000159267.17	ENST00000674895.3:ENST00000336648.8:ENST00000612277.4:ENST00000399120.5:ENST00000675307.1:ENST00000675057.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	27	2	4.19022	4.291625	4.39303	0.0237246	0.0209891	0.122348	0.118716
chr9	70276312	70276412	4139341	0	+	0.37	(0.35,0.378]	chr9	377236	80	INTRON	INTRON	SMC5	ENSG00000198887.9	ENST00000361138.7	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.19022	4.291625	4.39303	0.0237246	0.0209891	0.122348	0.118716
chr12	22635554	22635654	5094846	0	+	0.3	(0.28,0.32]	chr12	481224	95	INTRON	INTRON	ETNK1	ENSG00000139163.16	ENST00000671733.1:ENST00000335148.8:ENST00000672951.1:ENST00000266517.9:ENST00000538218.2:ENST00000673496.1:ENST00000673406.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	93	2	2.40458	4.29161	6.17864	0.0141047	1.96985e-5	0.0959618	0.00342171
chr7	5416070	5416170	3472006	0	-	0.49	(0.476,0.515]	chr7	324678	88	INTRON	INTRON	TNRC18	ENSG00000182095.15	ENST00000399537.8:ENST00000430969.6:ENST00000399434.2	protein_coding	protein_coding	protein_coding	protein_coding	6	130	2	2.10459	4.2914200000000005	6.47825	0.00302726	6.2013e-7	0.0493883	4.27699e-4
chr1	54384082	54384182	463538	0	-	0.46	(0.44,0.476]	chr1	55784	274	INTRON	INTRON	SSBP3	ENSG00000157216.16	ENST00000610401.5:ENST00000357475.9:ENST00000371319.8:ENST00000417664.7:ENST00000533946.6:ENST00000371320.8:ENST00000525990.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	27	2	3.97626	4.291365	4.60647	0.0300538	0.0102339	0.142135	0.0850389
chr19	16095893	16095987	7026178	0	+	0.457447	(0.44,0.476]	chr19	699223	1	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	TPM4	ENSG00000167460.17	ENST00000646974.2:ENST00000586499.6:ENST00000647464.2:ENST00000668959.1:ENST00000590180.3:ENST00000655004.1:ENST00000642789.1:ENST00000653979.1:ENST00000645471.1:ENST00000659595.1:ENST00000647037.1:ENST00000643579.2:ENST00000586193.6:ENST00000643494.1:ENST00000670382.1:ENST00000300933.9:ENST00000646575.1:ENST00000586833.7:ENST00000642221.1:ENST00000658224.1:ENST00000344824.11:ENST00000657915.1:ENST00000588483.2:ENST00000664983.1:ENST00000663894.1:ENST00000588032.6:ENST00000653961.1:ENST00000591645.3:ENST00000658489.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	27	2	3.97626	4.291365	4.60647	0.0300538	0.0102339	0.142135	0.0850389
chr19	52302180	52302280	7095013	0	+	0.45	(0.44,0.476]	chr19	711311	13	INTRON	INTRON	ZNF480	ENSG00000198464.14	ENST00000595962.6:ENST00000468240.6:ENST00000490272.1:ENST00000334564.11:ENST00000598016.5:ENST00000335090.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	27	2	3.97626	4.291365	4.60647	0.0300538	0.0102339	0.142135	0.0850389
chr6	49463953	49464051	2875089	0	+	0.459184	(0.44,0.476]	chr6	272831	1	INTRON	INTRON	CENPQ	ENSG00000031691.7	ENST00000335783.4	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	3.97626	4.291365	4.60647	0.0300538	0.0102339	0.142135	0.0850389
chr7	157206398	157206497	3454627	0	+	0.474747	(0.44,0.476]	chr7	322965	42	INTRON	INTRON	UBE3C	ENSG00000009335.18	ENST00000348165.10	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	3.97626	4.291365	4.60647	0.0300538	0.0102339	0.142135	0.0850389
chr11	66286540	66286640	4968086	0	-	0.53	(0.515,0.57]	chr11	468407	2	SS5_PROX	SS5_PROX:INTRON	YIF1A	ENSG00000174851.16	ENST00000359461.10:ENST00000376901.9:ENST00000471387.6:ENST00000484814.1:ENST00000431556.6:ENST00000528575.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	51	2	3.05839	4.291320000000001	5.52425	0.00485936	1.68822e-4	0.0640618	0.0119215
chr1	112955275	112955367	524135	0	-	0.48913	(0.476,0.515]	chr1	61697	1	UTR5	UTR5:EXON_MRNA:INTRON	SLC16A1	ENSG00000155380.13	ENST00000679803.1:ENST00000369626.8:ENST00000538576.5:ENST00000429288.2:ENST00000458229.6:ENST00000679846.1:ENST00000478835.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	57	2	2.87879	4.2913	5.70381	0.00999149	1.75496e-4	0.0879541	0.01216
chr11	65202376	65202475	4804596	0	+	0.212121	[0,0.28]	chr11	446277	133	INTRON	INTRON	CAPN1	ENSG00000014216.16	ENST00000533820.5:ENST00000533129.5:ENST00000524773.5:ENST00000279247.11:ENST00000527323.5:ENST00000533079.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	30	2	3.96122	4.29103	4.62084	0.0617993	0.0313633	0.193423	0.13151
chr14	27620037	27620137	5849052	0	-	0.19	[0,0.28]	chr14	556260	2975	INTRON	INTRON	ENSG00000258932	ENSG00000258932.5	ENST00000553392.5:ENST00000554904.5:ENST00000556890.1:ENST00000555797.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	0	30	2	3.96122	4.29103	4.62084	0.0617993	0.0313633	0.193423	0.13151
chr2	158503490	158503590	897605	0	+	0.23	[0,0.28]	chr2	99341	448	INTRON	INTRON	PKP4	ENSG00000144283.23	ENST00000389759.8:ENST00000426248.7:ENST00000389757.7:ENST00000457109.5:ENST00000452162.5:ENST00000411900.5:ENST00000421462.5:ENST00000462335.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	30	2	3.96122	4.29103	4.62084	0.0617993	0.0313633	0.193423	0.13151
chr7	129282122	129282222	3410043	0	+	0.27	[0,0.28]	chr7	318776	563	INTRON	INTRON	AHCYL2	ENSG00000158467.17	ENST00000325006.8:ENST00000446544.6	protein_coding	protein_coding	protein_coding	protein_coding	0	30	2	3.96122	4.29103	4.62084	0.0617993	0.0313633	0.193423	0.13151
chr8	126270800	126270900	4051340	0	-	0.26	[0,0.28]	chr8	369353	1574	INTRON	INTRON	LINC00861	ENSG00000245164.9	ENST00000651482.1	lncRNA	lncRNA	lncRNA	lncRNA	0	30	2	3.96122	4.29103	4.62084	0.0617993	0.0313633	0.193423	0.13151
chrX	136927972	136928072	7727649	0	+	0.28	[0,0.28]	chrX	790772	22	INTRON	INTRON	TM9SF5P	ENSG00000234062.9	ENST00000650669.2:ENST00000687469.1:ENST00000431464.6:ENST00000685550.1:ENST00000685929.1:ENST00000424306.5:ENST00000687978.1:ENST00000688713.1:ENST00000693626.1:ENST00000686432.1:ENST00000693698.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	30	2	3.96122	4.29103	4.62084	0.0617993	0.0313633	0.193423	0.13151
chr11	107436123	107436221	5032244	0	-	0.438776	(0.408,0.44]	chr11	474164	20	INTRON	INTRON	CWF19L2	ENSG00000152404.16	ENST00000282251.10:ENST00000431778.5:ENST00000532251.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	59	2	3.90311	4.291024999999999	4.67894	0.0087648	1.24325e-4	0.0788605	0.00952291
chr1	2235557	2235656	2238	0	+	0.585859	(0.57,1]	chr1	553	25	INTRON	INTRON	SKI	ENSG00000157933.10	ENST00000378536.5:ENST00000508416.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	49	2	2.99147	4.29097	5.59047	6.75142e-4	5.22506e-6	0.0237705	0.00156931
chr10	87511625	87511725	4482488	0	+	0.39	(0.378,0.408]	chr10	412504	27	INTRON	INTRON	MINPP1	ENSG00000107789.16	ENST00000371994.8:ENST00000371996.9:ENST00000536010.1	protein_coding	protein_coding	protein_coding	protein_coding	1	56	2	3.1136	4.290965	5.46833	0.00443339	7.05018e-4	0.061054	0.024224
chr1	90915997	90916097	501458	0	-	0.3	(0.28,0.32]	chr1	59467	8	UTR3	UTR3:EXON_MRNA	ZNF644	ENSG00000122482.22	ENST00000370440.5:ENST00000337393.10:ENST00000347275.9	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.2432	4.290915	4.33863	0.0479043	0.0207276	0.153019	0.122348
chr1	99850734	99850816	170108	0	+	0.292683	(0.28,0.32]	chr1	18332	4	UTR5	UTR5:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	AGL	ENSG00000162688.17	ENST00000361915.8:ENST00000370165.7:ENST00000370163.7:ENST00000294724.8	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.2432	4.290915	4.33863	0.0479043	0.0207276	0.153019	0.122348
chr1	167230334	167230434	244943	0	+	0.29	(0.28,0.32]	chr1	29245	90	INTRON	INTRON	POU2F1	ENSG00000143190.23	ENST00000559038.5:ENST00000367866.7:ENST00000557909.5:ENST00000271411.8:ENST00000429375.6:ENST00000560232.6:ENST00000442313.5:ENST00000367865.5:ENST00000492850.5:ENST00000541643.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	28	2	4.2432	4.290915	4.33863	0.0479043	0.0207276	0.153019	0.122348
chr11	12719919	12720019	4740033	0	+	0.32	(0.28,0.32]	chr11	439061	440	INTRON	INTRON	TEAD1	ENSG00000187079.20	ENST00000527636.7:ENST00000527376.3:ENST00000334310.10:ENST00000527575.6	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.2432	4.290915	4.33863	0.0479043	0.0207276	0.153019	0.122348
chr14	36924999	36925099	5875537	0	-	0.32	(0.28,0.32]	chr14	558013	496	INTRON	INTRON	SLC25A21	ENSG00000183032.12	ENST00000331299.6:ENST00000555449.5:ENST00000557611.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	28	2	4.2432	4.290915	4.33863	0.0479043	0.0207276	0.153019	0.122348
chr15	84693317	84693416	6251799	0	-	0.313131	(0.28,0.32]	chr15	596683	8	INTRON	INTRON	SEC11A	ENSG00000140612.14	ENST00000559729.5:ENST00000268220.12:ENST00000560266.5:ENST00000558134.5:ENST00000558217.5:ENST00000455959.7:ENST00000560409.5:ENST00000558196.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	28	2	4.2432	4.290915	4.33863	0.0479043	0.0207276	0.153019	0.122348
chr2	241717699	241717798	1056168	0	+	0.30303	(0.28,0.32]	chr2	112593	53	INTRON	INTRON	ING5	ENSG00000168395.16	ENST00000636051.1:ENST00000313552.11:ENST00000482774.5:ENST00000406941.5:ENST00000445620.5:ENST00000489509.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	28	2	4.2432	4.290915	4.33863	0.0479043	0.0207276	0.153019	0.122348
chr3	100301656	100301747	1465987	0	+	0.307692	(0.28,0.32]	chr3	153646	2	SS3_PROX	SS3_PROX:INTRON	TBC1D23	ENSG00000036054.13	ENST00000394144.9:ENST00000344949.9:ENST00000486274.5:ENST00000475134.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	28	2	4.2432	4.290915	4.33863	0.0479043	0.0207276	0.153019	0.122348
chr3	179167977	179168077	1565997	0	+	0.3	(0.28,0.32]	chr3	161904	179	INTRON	INTRON	PIK3CA	ENSG00000121879.6	ENST00000477735.1:ENST00000263967.4:ENST00000643187.1:ENST00000675786.1:ENST00000468036.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	28	2	4.2432	4.290915	4.33863	0.0479043	0.0207276	0.153019	0.122348
chr3	197068637	197068718	1901172	0	-	0.283951	(0.28,0.32]	chr3	190506	1	SS3_PROX	SS3_PROX:INTRON	DLG1	ENSG00000075711.21	ENST00000667157.1:ENST00000346964.6:ENST00000656428.1:ENST00000663148.1:ENST00000655488.1:ENST00000357674.9:ENST00000671185.1:ENST00000658701.1:ENST00000667104.1:ENST00000661336.1:ENST00000669565.1:ENST00000670455.1:ENST00000656087.1:ENST00000670366.1:ENST00000653583.1:ENST00000653795.1:ENST00000671246.1:ENST00000661453.1:ENST00000665728.1:ENST00000664564.1:ENST00000653331.1:ENST00000660432.1:ENST00000660898.1:ENST00000657381.1:ENST00000659221.1:ENST00000654737.1:ENST00000469371.5:ENST00000669332.1:ENST00000659716.1:ENST00000660553.1:ENST00000664991.1:ENST00000419354.5:ENST00000661440.1:ENST00000667971.1:ENST00000670935.1:ENST00000668578.1:ENST00000666007.1:ENST00000661229.1:ENST00000660237.1:ENST00000657098.1:ENST00000661013.1:ENST00000436682.6:ENST00000452595.5:ENST00000662727.1:ENST00000422288.6:ENST00000448528.6:ENST00000443183.5:ENST00000656944.1:ENST00000392382.6:ENST00000450955.5:ENST00000658155.1:ENST00000669714.1:ENST00000654733.1:ENST00000475394.5:ENST00000469073.2:ENST00000470629.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	28	2	4.2432	4.290915	4.33863	0.0479043	0.0207276	0.153019	0.122348
chr5	64746318	64746418	2630226	0	-	0.31	(0.28,0.32]	chr5	249948	43	INTRON	INTRON	SREK1IP1	ENSG00000153006.16	ENST00000513458.9:ENST00000495198.6:ENST00000510616.5:ENST00000506252.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	28	2	4.2432	4.290915	4.33863	0.0479043	0.0207276	0.153019	0.122348
chr5	119152936	119153036	2460606	0	+	0.31	(0.28,0.32]	chr5	235692	5	INTRON	INTRON	DMXL1	ENSG00000172869.15	ENST00000539542.6:ENST00000311085.8	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.2432	4.290915	4.33863	0.0479043	0.0207276	0.153019	0.122348
chr6	63693023	63693119	2883874	0	+	0.3125	(0.28,0.32]	chr6	273595	6	INTRON	INTRON	PHF3	ENSG00000118482.12	ENST00000262043.8:ENST00000506783.5:ENST00000481385.6:ENST00000515594.5:ENST00000494284.6:ENST00000509876.5:ENST00000393387.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	28	2	4.2432	4.290915	4.33863	0.0479043	0.0207276	0.153019	0.122348
chr9	112712764	112712864	4318258	0	-	0.32	(0.28,0.32]	chr9	397118	105	INTRON	INTRON	INIP	ENSG00000148153.14	ENST00000374242.9:ENST00000497712.6:ENST00000374236.5:ENST00000481146.6:ENST00000374234.1:ENST00000476599.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	28	2	4.2432	4.290915	4.33863	0.0479043	0.0207276	0.153019	0.122348
chr2	23909662	23909762	1080782	0	-	0.29	(0.28,0.32]	chr2	115373	133	INTRON	INTRON	ATAD2B	ENSG00000119778.15	ENST00000238789.10:ENST00000439915.1	protein_coding	protein_coding	protein_coding	protein_coding	1	67	2	3.77927	4.29091	4.80255	0.0137406	3.56863e-4	0.0949306	0.0169148
chr1	6655580	6655680	368604	0	-	0.52	(0.515,0.57]	chr1	43337	9	INTRON	INTRON	DNAJC11	ENSG00000007923.17	ENST00000451196.5:ENST00000377577.10:ENST00000690452.1:ENST00000685129.1:ENST00000472414.2:ENST00000688524.1:ENST00000686243.1:ENST00000690062.1:ENST00000689474.1:ENST00000294401.11:ENST00000426784.1:ENST00000473993.5:ENST00000685485.1:ENST00000691444.1:ENST00000688162.1:ENST00000469318.5:ENST00000485073.5:ENST00000460594.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	26	2	3.89856	4.29083	4.6831	0.0280943	0.00471288	0.137011	0.0600108
chr10	121883940	121884040	4709385	0	-	0.52	(0.515,0.57]	chr10	434485	50	INTRON	INTRON	ATE1	ENSG00000107669.19	ENST00000369043.8:ENST00000224652.12:ENST00000693411.1:ENST00000540606.7:ENST00000690773.1:ENST00000686894.1:ENST00000685890.1:ENST00000687583.1:ENST00000693276.1:ENST00000686451.1:ENST00000687319.1:ENST00000686786.1:ENST00000684967.1:ENST00000689057.1:ENST00000692329.1:ENST00000689393.1:ENST00000689571.1:ENST00000692718.1:ENST00000688526.1:ENST00000692034.1:ENST00000690128.1:ENST00000690748.1:ENST00000692491.1:ENST00000369040.9:ENST00000691087.1:ENST00000691830.1:ENST00000687089.1:ENST00000693486.1:ENST00000690355.1:ENST00000691765.1:ENST00000691226.1:ENST00000692743.1:ENST00000691108.1:ENST00000689297.1:ENST00000685427.1:ENST00000692513.1:ENST00000688057.1:ENST00000684876.1:ENST00000687607.1:ENST00000688424.1:ENST00000692255.1:ENST00000690706.1:ENST00000693395.1:ENST00000690324.1:ENST00000692278.1:ENST00000687144.1:ENST00000691573.1:ENST00000685289.1:ENST00000686907.1:ENST00000687206.1:ENST00000685007.1:ENST00000686811.1:ENST00000691041.1:ENST00000423243.7:ENST00000689834.1:ENST00000689455.1:ENST00000693655.1:ENST00000690488.1:ENST00000687458.1:ENST00000685072.1:ENST00000692087.1:ENST00000690415.1:ENST00000687935.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	26	2	3.89856	4.29083	4.6831	0.0280943	0.00471288	0.137011	0.0600108
chr12	2965550	2965650	5066591	0	+	0.55	(0.515,0.57]	chr12	478187	48	INTRON	INTRON	TEAD4	ENSG00000197905.10	ENST00000358409.7:ENST00000359864.8:ENST00000540314.2:ENST00000536826.2:ENST00000543035.6:ENST00000397122.6:ENST00000443986.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	26	2	3.89856	4.29083	4.6831	0.0280943	0.00471288	0.137011	0.0600108
chr12	112446798	112446898	5230078	0	+	0.52	(0.515,0.57]	chr12	495842	4	SS5_PROX	SS5_PROX:INTRON	PTPN11	ENSG00000179295.19	ENST00000688597.1:ENST00000692624.1:ENST00000685487.1:ENST00000690210.1:ENST00000639857.2:ENST00000392597.5:ENST00000687906.1:ENST00000351677.7:ENST00000635625.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	26	2	3.89856	4.29083	4.6831	0.0280943	0.00471288	0.137011	0.0600108
chr22	42166520	42166619	7592520	0	-	0.535354	(0.515,0.57]	chr22	777689	48	INTRON	INTRON	TCF20	ENSG00000100207.21	ENST00000359486.8:ENST00000677622.1:ENST00000683686.1:ENST00000335626.8:ENST00000404876.1	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	3.89856	4.29083	4.6831	0.0280943	0.00471288	0.137011	0.0600108
chr5	21460535	21460628	2325731	0	+	0.569892	(0.515,0.57]	chr5	225000	3	INTRON	INTRON	GUSBP1	ENSG00000183666.18	ENST00000508260.5:ENST00000685140.1:ENST00000449061.3:ENST00000685932.1:ENST00000692990.1:ENST00000691699.1:ENST00000690861.1:ENST00000509649.5:ENST00000508973.6:ENST00000685731.1:ENST00000688956.1:ENST00000688960.1:ENST00000687425.1:ENST00000691878.1:ENST00000692922.1:ENST00000686144.1:ENST00000607545.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	26	2	3.89856	4.29083	4.6831	0.0280943	0.00471288	0.137011	0.0600108
chr6	147762345	147762445	2991622	0	+	0.52	(0.515,0.57]	chr6	280177	249	INTRON	INTRON	ENSG00000227681	ENSG00000227681.5	ENST00000427015.1	lncRNA	lncRNA	lncRNA	lncRNA	0	26	2	3.89856	4.29083	4.6831	0.0280943	0.00471288	0.137011	0.0600108
chr9	34039971	34040070	4245762	0	-	0.525253	(0.515,0.57]	chr9	390499	67	INTRON	INTRON	UBAP2	ENSG00000137073.24	ENST00000379238.7:ENST00000683659.1:ENST00000682239.1:ENST00000683140.1:ENST00000682209.1:ENST00000681980.1:ENST00000360802.6:ENST00000683252.1:ENST00000684158.1:ENST00000682914.1:ENST00000683717.1:ENST00000379239.9:ENST00000683084.1:ENST00000684754.1:ENST00000629575.2:ENST00000684298.1:ENST00000480885.5:ENST00000459988.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	26	2	3.89856	4.29083	4.6831	0.0280943	0.00471288	0.137011	0.0600108
chr18	13024384	13024483	6876909	0	+	0.272727	[0,0.28]	chr18	681391	48	INTRON	INTRON	CEP192	ENSG00000101639.19	ENST00000325971.12:ENST00000506447.5:ENST00000589596.5:ENST00000513432.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	91	2	2.8486	4.29068	5.73276	0.00254189	0.00156565	0.0465056	0.0360583
chr7	87178447	87178547	3345896	0	+	0.24	[0,0.28]	chr7	311675	34	INTRON	INTRON	DMTF1	ENSG00000135164.19	ENST00000413276.6:ENST00000447863.5:ENST00000579677.5:ENST00000425406.5:ENST00000547146.6:ENST00000579850.5:ENST00000331242.12:ENST00000430405.7:ENST00000432937.6:ENST00000584619.5:ENST00000394703.9:ENST00000412139.6:ENST00000425705.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	70	2	3.57809	4.29036	5.00263	0.013055	0.00109779	0.093385	0.0303708
chr3	37317083	37317182	1396503	0	+	0.242424	[0,0.28]	chr3	146397	11	INTRON	INTRON	GOLGA4	ENSG00000144674.17	ENST00000435830.6:ENST00000444882.5:ENST00000356847.8:ENST00000361924.7:ENST00000429018.5:ENST00000437131.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	73	2	3.75586	4.290095	4.82433	0.0200334	5.203e-4	0.109608	0.0204523
chr9	91920466	91920566	4284970	0	-	0.48	(0.476,0.515]	chr9	393921	334	INTRON	INTRON	ROR2	ENSG00000169071.15	ENST00000375715.5:ENST00000375708.4:ENST00000495386.5:ENST00000546883.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	101	2	2.21313	4.289885	6.36664	0.00401502	6.14294e-6	0.0578059	0.00185892
chr21	39231096	39231192	7464695	0	-	0.1875	[0,0.28]	chr21	760450	13	INTRON	INTRON	BRWD1	ENSG00000185658.14	ENST00000333229.6:ENST00000342449.8:ENST00000446924.5:ENST00000380800.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	70	2	2.74901	4.28975	5.83049	0.0188843	0.00112548	0.118148	0.0306963
chr12	111974642	111974742	5414175	0	-	0.29	(0.28,0.32]	chr12	517076	85	INTRON	INTRON	TMEM116	ENSG00000198270.13	ENST00000550831.7:ENST00000552374.7:ENST00000355445.7:ENST00000547878.6:ENST00000549537.6:ENST00000552801.6:ENST00000548283.6:ENST00000550800.6:ENST00000550037.5:ENST00000551297.6:ENST00000550020.6:ENST00000546537.6:ENST00000549425.5:ENST00000552839.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	65	2	3.65016	4.289725	4.92929	0.0098607	6.39301e-4	0.0838128	0.0228666
chr17	51100078	51100178	6796810	0	-	0.3	(0.28,0.32]	chr17	671024	200	INTRON	INTRON	SPAG9	ENSG00000008294.22	ENST00000262013.12:ENST00000505279.5:ENST00000357122.8	protein_coding	protein_coding	protein_coding	protein_coding	1	65	2	3.65016	4.289725	4.92929	0.0098607	6.39301e-4	0.0838128	0.0228666
chr12	91436455	91436555	5383580	0	-	0.47	(0.44,0.476]	chr12	513479	367	INTRON	INTRON	ENSG00000289605	ENSG00000289605.1	ENST00000685093.1	lncRNA	lncRNA	lncRNA	lncRNA	1	58	2	3.12799	4.28948	5.45097	0.0050635	1.90652e-4	0.0621733	0.0120089
chr17	75135718	75135812	6835890	0	-	0.457447	(0.44,0.476]	chr17	675451	6	UTR3	UTR3:EXON_MRNA	JPT1	ENSG00000189159.16	ENST00000409753.8:ENST00000476258.5:ENST00000482348.5:ENST00000304834.11:ENST00000356033.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	58	2	3.12799	4.28948	5.45097	0.0050635	1.90652e-4	0.0621733	0.0120089
chr10	96913040	96913140	4503779	0	+	0.36	(0.35,0.378]	chr10	414561	49	INTRON	INTRON	LCOR	ENSG00000196233.14	ENST00000676067.1:ENST00000676257.1:ENST00000676187.1:ENST00000675151.1:ENST00000675687.1:ENST00000675251.1:ENST00000676123.1:ENST00000371103.8:ENST00000675471.1:ENST00000421806.4:ENST00000675902.1:ENST00000540664.6:ENST00000676414.1:ENST00000675537.1:ENST00000675117.1:ENST00000675125.1:ENST00000356016.7:ENST00000371097.8:ENST00000676381.1:ENST00000674796.1:ENST00000674725.1:ENST00000675971.1:ENST00000676373.1:ENST00000493486.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	57	2	3.31736	4.289305000000001	5.26125	0.00211072	0.00191117	0.0425419	0.03947
chr15	58608065	58608164	6192080	0	-	0.363636	(0.35,0.378]	chr15	589892	80	INTRON	INTRON	ADAM10	ENSG00000137845.15	ENST00000260408.8:ENST00000402627.5:ENST00000561288.1:ENST00000482945.5:ENST00000396136.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	57	2	3.31736	4.289305000000001	5.26125	0.00211072	0.00191117	0.0425419	0.03947
chr6	85622381	85622481	3151239	0	-	0.37	(0.35,0.378]	chr6	293879	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ENSG00000271793:SYNCRIP	ENSG00000271793.2:ENSG00000135316.19	ENST00000682083.1:ENST00000683074.1:ENST00000681965.1:ENST00000682504.1:ENST00000682106.1:ENST00000683364.1:ENST00000683436.1:ENST00000684220.1:ENST00000683909.1:ENST00000684462.1:ENST00000616122.5:ENST00000678528.1:ENST00000676637.1:ENST00000677771.1:ENST00000355238.11:ENST00000678878.1:ENST00000677481.1:ENST00000677646.1:ENST00000676630.1:ENST00000678618.1:ENST00000676542.1:ENST00000677059.1:ENST00000444272.2:ENST00000678899.1:ENST00000369622.8:ENST00000678355.1:ENST00000676688.1:ENST00000677514.1:ENST00000678816.1:ENST00000678930.1:ENST00000678589.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	57	2	3.31736	4.289305000000001	5.26125	0.00211072	0.00191117	0.0425419	0.03947
chr1	227250268	227250368	651037	0	-	0.47	(0.44,0.476]	chr1	77102	305	INTRON	INTRON	CDC42BPA	ENSG00000143776.20	ENST00000366766.8:ENST00000366769.7:ENST00000334218.9:ENST00000366767.7:ENST00000366764.8:ENST00000478573.6:ENST00000682551.1:ENST00000462553.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	78	2	2.74546	4.28927	5.83308	0.00326603	2.77366e-5	0.0508595	0.00415129
chr2	113908717	113908816	854431	0	+	0.363636	(0.35,0.378]	chr2	95897	36	INTRON	INTRON	ACTR3	ENSG00000115091.12	ENST00000443297.5:ENST00000263238.7:ENST00000415792.5:ENST00000446821.5:ENST00000535589.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	57	2	3.26794	4.28926	5.31058	0.00257067	0.00160599	0.0466761	0.0364977
chr19	28537176	28537276	7166467	0	-	0.37	(0.35,0.378]	chr19	724193	20	INTRON	INTRON	ENSG00000283403	ENSG00000283403.1	ENST00000592347.5	lncRNA	lncRNA	lncRNA	lncRNA	10	164	2	1.62733	4.2891900000000005	6.95105	0.00859752	6.58111e-7	0.083729	4.79925e-4
chr11	96317285	96317385	5024109	0	-	0.34	(0.32,0.35]	chr11	473809	2234	INTRON	INTRON	MAML2	ENSG00000184384.14	ENST00000524717.6	protein_coding	protein_coding	protein_coding	protein_coding	1	65	2	3.24087	4.28916	5.33745	0.00420518	6.1485e-4	0.0572185	0.0223951
chr7	129854879	129854979	3636979	0	-	0.32	(0.28,0.32]	chr7	338182	152	INTRON	INTRON	UBE2H	ENSG00000186591.13	ENST00000355621.8:ENST00000649897.1:ENST00000473814.6:ENST00000496698.5:ENST00000472396.5:ENST00000480245.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	73	2	2.45545	4.289149999999999	6.12285	0.0438092	2.62905e-5	0.14901	0.00402941
chr3	47144645	47144745	1681411	0	-	0.46	(0.44,0.476]	chr3	171624	176	INTRON	INTRON	SETD2	ENSG00000181555.22	ENST00000691544.1:ENST00000638947.2:ENST00000409792.4:ENST00000412450.1	protein_coding	protein_coding	protein_coding	protein_coding	2	119	2	4.15853	4.28904	4.41955	5.45601e-5	6.27516e-6	0.00651589	0.00175994
chr3	196932930	196933029	1597105	0	+	0.434343	(0.408,0.44]	chr3	165450	11	UTR3	UTR3:EXON_MRNA	SENP5	ENSG00000119231.11	ENST00000323460.10	protein_coding	protein_coding	protein_coding	protein_coding	2	124	2	4.06657	4.28897	4.51137	5.10925e-5	8.20456e-6	0.00585477	0.0021736
chr16	22492922	22493021	6322534	0	+	0.40404	(0.378,0.408]	chr16	605439	7	INTRON	INTRON	NPIPB5	ENSG00000243716.11	ENST00000415654.5:ENST00000415833.6:ENST00000546168.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	125	2	2.28418	4.28895	6.29372	0.00226196	2.29318e-6	0.0425438	9.48688e-4
chr21	22210000	22210081	7384467	0	+	0.555556	(0.515,0.57]	chr21	752718	2	EXON_LNCRNA	EXON_LNCRNA	ENSG00000226043	ENSG00000226043.2	ENST00000667099.1:ENST00000654607.1:ENST00000444130.1	lncRNA	lncRNA	lncRNA	lncRNA	2	70	2	2.92045	4.288915	5.65738	0.00128922	3.32659e-5	0.0328334	0.00461719
chr1	2242621	2242721	2309	0	+	0.49	(0.476,0.515]	chr1	553	96	INTRON	INTRON	SKI	ENSG00000157933.10	ENST00000378536.5:ENST00000508416.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	100	2	2.31113	4.288875	6.26662	0.00258657	1.06599e-5	0.0469354	0.00256951
chr21	39281645	39281744	7465219	0	-	0.454545	(0.44,0.476]	chr21	760548	10	INTRON	INTRON	BRWD1	ENSG00000185658.14	ENST00000333229.6:ENST00000342449.8:ENST00000380800.7	protein_coding	protein_coding	protein_coding	protein_coding	1	58	2	3.07862	4.2887	5.49878	0.0060153	1.52058e-4	0.0674604	0.0106137
chr2	113924162	113924261	854588	0	+	0.454545	(0.44,0.476]	chr2	95910	68	INTRON	INTRON	ACTR3	ENSG00000115091.12	ENST00000443297.5:ENST00000263238.7:ENST00000415792.5:ENST00000446821.5:ENST00000535589.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	56	2	3.67739	4.288695000000001	4.9	0.00423315	3.8961e-4	0.0572185	0.0177751
chr5	70227494	70227594	2638061	0	-	0.56	(0.515,0.57]	chr5	250619	13	INTRON	INTRON	GUSBP14	ENSG00000253816.3	ENST00000514522.2	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	2	66	2	2.96467	4.2886050000000004	5.61254	8.94279e-4	1.10757e-4	0.0273458	0.00945003
chr6	57095417	57095515	2878108	0	+	0.459184	(0.44,0.476]	chr6	273232	20	INTRON	INTRON	ZNF451	ENSG00000112200.17	ENST00000515290.5:ENST00000510483.5:ENST00000357489.7:ENST00000370708.8:ENST00000370702.5:ENST00000444273.6:ENST00000370711.9:ENST00000508603.5:ENST00000370706.9:ENST00000491832.6:ENST00000370710.10:ENST00000502749.1:ENST00000504603.1:ENST00000509071.5:ENST00000510989.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	87	2	2.73545	4.288460000000001	5.84147	7.908e-4	1.03947e-4	0.0258324	0.00915599
chr5	72224116	72224216	2639823	0	-	0.46	(0.44,0.476]	chr5	250903	2	SS3_PROX	SS3_PROX:INTRON	MRPS27	ENSG00000113048.18	ENST00000694990.1:ENST00000694989.1:ENST00000522042.2:ENST00000694988.1:ENST00000261413.10:ENST00000513900.6:ENST00000695403.1:ENST00000523654.6:ENST00000694998.1:ENST00000694997.1:ENST00000695298.1:ENST00000694996.1:ENST00000694995.1:ENST00000519143.6:ENST00000694994.1:ENST00000695297.1:ENST00000695296.1:ENST00000694993.1:ENST00000694992.1:ENST00000694991.1:ENST00000694999.1:ENST00000457646.9:ENST00000515226.5:ENST00000695404.1:ENST00000508863.6:ENST00000522562.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	55	2	3.08591	4.28844	5.49097	0.00481262	4.8612e-4	0.0638089	0.0203841
chr17	80136621	80136716	6846929	0	-	0.431579	(0.408,0.44]	chr17	677667	4	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	EIF4A3	ENSG00000141543.12	ENST00000649764.2:ENST00000575978.1:ENST00000576573.1:ENST00000647795.1:ENST00000576547.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	27	2	3.97679	4.28829	4.59979	0.0299485	0.0109537	0.142135	0.0873034
chr20	56372033	56372130	7358677	0	-	0.43299	(0.408,0.44]	chr20	750340	10	INTRON	INTRON	AURKA	ENSG00000087586.18	ENST00000395914.5:ENST00000395913.7:ENST00000312783.10:ENST00000395911.5:ENST00000395915.8:ENST00000347343.6:ENST00000371356.6:ENST00000395907.5	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	3.97679	4.28829	4.59979	0.0299485	0.0109537	0.142135	0.0873034
chr22	49445410	49445510	7600533	0	-	0.41	(0.408,0.44]	chr22	778566	38	INTRON	INTRON	MIR3667HG	ENSG00000188511.13	ENST00000414287.5:ENST00000416411.1	lncRNA	lncRNA	lncRNA	lncRNA	0	27	2	3.97679	4.28829	4.59979	0.0299485	0.0109537	0.142135	0.0873034
chr6	39209062	39209162	3090601	0	-	0.44	(0.408,0.44]	chr6	289173	127	INTRON	INTRON	KCNK5	ENSG00000164626.9	ENST00000359534.4	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	3.97679	4.28829	4.59979	0.0299485	0.0109537	0.142135	0.0873034
chr1	179210450	179210550	592887	0	-	0.3	(0.28,0.32]	chr1	71074	675	INTRON	INTRON	ABL2	ENSG00000143322.21	ENST00000502732.6:ENST00000367623.8:ENST00000507173.5:ENST00000511413.5:ENST00000668691.1:ENST00000392043.4:ENST00000660584.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	71	2	2.57195	4.288155	6.00436	0.0331711	4.77464e-5	0.133994	0.00563886
chr12	28419924	28420023	5102587	0	+	0.474747	(0.44,0.476]	chr12	481989	66	INTRON	INTRON	CCDC91	ENSG00000123106.11	ENST00000540794.5:ENST00000536154.5:ENST00000535520.5:ENST00000539107.5:ENST00000545336.5:ENST00000536442.6:ENST00000543809.5:ENST00000545737.5:ENST00000381259.5:ENST00000540401.5:ENST00000539904.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	56	2	2.9586	4.28805	5.6175	0.00758318	2.84938e-4	0.0773151	0.015495
chr11	31665344	31665444	4762379	0	+	0.31	(0.28,0.32]	chr11	440407	10	INTRON	INTRON	ELP4	ENSG00000109911.19	ENST00000639878.1:ENST00000379163.10:ENST00000350638.10:ENST00000638347.1:ENST00000640961.2:ENST00000640081.1:ENST00000640342.1:ENST00000640231.1:ENST00000638917.1:ENST00000395934.2:ENST00000640954.1:ENST00000638184.1:ENST00000638984.1:ENST00000640790.1:ENST00000639097.1:ENST00000638828.1:ENST00000639182.1:ENST00000638317.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	28	2	4.14214	4.28777	4.4334	0.0579756	0.0163355	0.167723	0.109464
chr11	78408055	78408154	5000290	0	-	0.30303	(0.28,0.32]	chr11	472472	436	INTRON	INTRON	GAB2	ENSG00000033327.13	ENST00000361507.5:ENST00000526030.1:ENST00000528886.5:ENST00000530915.1:ENST00000534823.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	28	2	4.14214	4.28777	4.4334	0.0579756	0.0163355	0.167723	0.109464
chr17	57674417	57674517	6636957	0	+	0.31	(0.28,0.32]	chr17	648124	1	SS3_PROX	SS3_PROX:INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000675656.1:ENST00000442934.6:ENST00000579505.5:ENST00000675379.1:ENST00000675127.1:ENST00000579466.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	28	2	4.14214	4.28777	4.4334	0.0579756	0.0163355	0.167723	0.109464
chr3	6595344	6595444	1357197	0	+	0.3	(0.28,0.32]	chr3	142522	109	INTRON	INTRON	ENSG00000189229	ENSG00000189229.12	ENST00000433639.1:ENST00000655754.1:ENST00000658468.1:ENST00000669512.1:ENST00000667028.1:ENST00000655541.1:ENST00000668643.1:ENST00000671568.1:ENST00000671036.1:ENST00000669798.1:ENST00000655753.1:ENST00000655856.1:ENST00000658398.1:ENST00000661518.1:ENST00000661279.1:ENST00000655495.1:ENST00000663041.1:ENST00000659827.1:ENST00000667716.1:ENST00000668416.1:ENST00000658133.1:ENST00000342990.4:ENST00000660054.1:ENST00000671370.1	lncRNA	lncRNA	lncRNA	lncRNA	0	28	2	4.14214	4.28777	4.4334	0.0579756	0.0163355	0.167723	0.109464
chr3	33821355	33821454	1394614	0	+	0.30303	(0.28,0.32]	chr3	146042	74	INTRON	INTRON	PDCD6IP	ENSG00000170248.15	ENST00000457054.6:ENST00000648706.1:ENST00000435909.5:ENST00000430877.5:ENST00000413073.1:ENST00000307296.8:ENST00000477798.5:ENST00000498147.5:ENST00000484478.5:ENST00000494810.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	28	2	4.14214	4.28777	4.4334	0.0579756	0.0163355	0.167723	0.109464
chr5	75555488	75555588	2391578	0	+	0.29	(0.28,0.32]	chr5	231020	25	INTRON	INTRON	POLK	ENSG00000122008.15	ENST00000241436.8:ENST00000503479.6:ENST00000506928.5:ENST00000510815.6:ENST00000505774.5:ENST00000514296.5:ENST00000514141.5:ENST00000515295.5:ENST00000508867.5:ENST00000504026.5:ENST00000505975.5:ENST00000508526.5:ENST00000509126.2:ENST00000511527.5:ENST00000507073.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	28	2	4.14214	4.28777	4.4334	0.0579756	0.0163355	0.167723	0.109464
chr6	107382915	107383015	3181147	0	-	0.32	(0.28,0.32]	chr6	296346	482	INTRON	INTRON	PDSS2	ENSG00000164494.12	ENST00000369037.9:ENST00000369031.4	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.14214	4.28777	4.4334	0.0579756	0.0163355	0.167723	0.109464
chr7	119509906	119510006	3626435	0	-	0.29	(0.28,0.32]	chr7	337315	94	INTRON	INTRON	LINC02476	ENSG00000225546.6	ENST00000660268.1	lncRNA	lncRNA	lncRNA	lncRNA	0	28	2	4.14214	4.28777	4.4334	0.0579756	0.0163355	0.167723	0.109464
chr7	143304033	143304103	3441451	0	+	0.285714	(0.28,0.32]	chr7	320940	1	SS5_PROX	SS5_PROX:INTRON	CASP2	ENSG00000106144.20	ENST00000619992.4:ENST00000310447.10:ENST00000350623.7:ENST00000493642.5:ENST00000472067.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	28	2	4.14214	4.28777	4.4334	0.0579756	0.0163355	0.167723	0.109464
chr7	158669761	158669858	3688433	0	-	0.298969	(0.28,0.32]	chr7	342207	9	INTRON	INTRON	NCAPG2	ENSG00000146918.20	ENST00000356309.8:ENST00000432615.5:ENST00000409423.5:ENST00000441982.5:ENST00000467785.5:ENST00000409339.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	28	2	4.14214	4.28777	4.4334	0.0579756	0.0163355	0.167723	0.109464
chr9	112291254	112291354	4317535	0	-	0.32	(0.28,0.32]	chr9	397072	149	INTRON	INTRON	PTBP3	ENSG00000119314.16	ENST00000334318.10:ENST00000458258.5:ENST00000374257.6:ENST00000374255.6:ENST00000343327.6:ENST00000487997.1:ENST00000210227.4:ENST00000450374.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	28	2	4.14214	4.28777	4.4334	0.0579756	0.0163355	0.167723	0.109464
chrX	15697039	15697139	7624444	0	+	0.32	(0.28,0.32]	chrX	780701	4	SS3_PROX	SS3_PROX:INTRON	CA5BP1:CA5B	ENSG00000186312.10:ENSG00000169239.13	ENST00000380336.5:ENST00000380334.6:ENST00000380333.5:ENST00000380331.5:ENST00000435806.2:ENST00000498004.5	protein_coding	protein_coding	protein_coding:transcribed_unprocessed_pseudogene	protein_coding:processed_transcript:transcribed_unprocessed_pseudogene	0	28	2	4.14214	4.28777	4.4334	0.0579756	0.0163355	0.167723	0.109464
chr7	152092290	152092390	3450182	0	+	0.3	(0.28,0.32]	chr7	322451	125	INTRON	INTRON	GALNT11	ENSG00000178234.13	ENST00000430044.7:ENST00000482812.1:ENST00000431668.1:ENST00000446096.5:ENST00000447778.5:ENST00000423337.5:ENST00000434507.5:ENST00000415421.5:ENST00000422997.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	68	2	3.08462	4.28761	5.4906	0.0078976	4.89126e-4	0.076155	0.0199693
chrX	136934254	136934354	7727712	0	+	0.37	(0.35,0.378]	chrX	790772	85	INTRON	INTRON	TM9SF5P	ENSG00000234062.9	ENST00000650669.2:ENST00000687469.1:ENST00000431464.6:ENST00000685550.1:ENST00000685929.1:ENST00000424306.5:ENST00000687978.1:ENST00000688713.1:ENST00000693626.1:ENST00000686432.1:ENST00000693698.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	1	65	2	3.54684	4.28758	5.02832	0.00156444	0.00119142	0.0365263	0.0315806
chr12	49700678	49700777	5322008	0	-	0.363636	(0.35,0.378]	chr12	507278	117	INTRON	INTRON	FMNL3	ENSG00000161791.14	ENST00000335154.10:ENST00000550488.5:ENST00000352151.9:ENST00000550424.1	protein_coding	protein_coding	protein_coding	protein_coding	1	57	2	3.21677	4.287525	5.35828	0.00313804	0.00135282	0.0514466	0.0336321
chr4	67480273	67480373	2152845	0	-	0.43	(0.408,0.44]	chr4	211913	49	INTRON	INTRON	CENPC	ENSG00000145241.11	ENST00000273853.11:ENST00000513216.5:ENST00000506882.5:ENST00000515140.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	214	2	3.99945	4.287495	4.57554	6.04558e-6	3.8524e-8	0.00184807	7.91533e-5
chr1	10478297	10478397	23009	0	+	0.31	(0.28,0.32]	chr1	2497	29	INTRON	INTRON	PEX14	ENSG00000142655.13	ENST00000472851.1:ENST00000356607.9:ENST00000491661.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	28	2	4.23719	4.28742	4.33765	0.039714	0.0264147	0.143072	0.133676
chr11	57323742	57323841	4952885	0	-	0.313131	(0.28,0.32]	chr11	464793	14	INTRON	INTRON	TNKS1BP1	ENSG00000149115.14	ENST00000528882.5:ENST00000358252.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	28	2	4.23719	4.28742	4.33765	0.039714	0.0264147	0.143072	0.133676
chr11	108271806	108271906	4857593	0	+	0.31	(0.28,0.32]	chr11	453166	4	SS5_PROX	SS5_PROX:INTRON	ATM	ENSG00000149311.20	ENST00000675843.1:ENST00000683174.1:ENST00000527805.6:ENST00000675595.1:ENST00000452508.6:ENST00000278616.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	28	2	4.23719	4.28742	4.33765	0.039714	0.0264147	0.143072	0.133676
chr12	132996644	132996744	5252197	0	+	0.29	(0.28,0.32]	chr12	499627	85	INTRON	INTRON	ZNF26	ENSG00000198393.8	ENST00000537956.1:ENST00000328654.10:ENST00000545101.1:ENST00000540238.5:ENST00000544181.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	28	2	4.23719	4.28742	4.33765	0.039714	0.0264147	0.143072	0.133676
chr14	94087347	94087447	5808159	0	+	0.32	(0.28,0.32]	chr14	550556	55	INTRON	INTRON	IFI27L1	ENSG00000165948.11	ENST00000553350.5:ENST00000555523.6:ENST00000557600.5:ENST00000393115.7:ENST00000556381.5:ENST00000554166.5:ENST00000555065.5:ENST00000553664.1:ENST00000555341.5:ENST00000557218.5:ENST00000554544.5:ENST00000557066.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	28	2	4.23719	4.28742	4.33765	0.039714	0.0264147	0.143072	0.133676
chr16	47105391	47105490	6480217	0	-	0.313131	(0.28,0.32]	chr16	626897	187	INTRON	INTRON	NETO2	ENSG00000171208.10	ENST00000562435.6:ENST00000303155.9:ENST00000562559.5:ENST00000564667.1:ENST00000563078.1	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.23719	4.28742	4.33765	0.039714	0.0264147	0.143072	0.133676
chr17	30262010	30262110	6751322	0	-	0.3	(0.28,0.32]	chr17	663466	119	INTRON	INTRON	BLMH	ENSG00000108578.15	ENST00000261714.11:ENST00000578090.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	28	2	4.23719	4.28742	4.33765	0.039714	0.0264147	0.143072	0.133676
chr17	59629435	59629535	6641658	0	+	0.31	(0.28,0.32]	chr17	648527	89	INTRON	INTRON	CLTC	ENSG00000141367.12	ENST00000621829.4:ENST00000393043.5:ENST00000269122.8:ENST00000580081.1:ENST00000579456.5:ENST00000584313.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	28	2	4.23719	4.28742	4.33765	0.039714	0.0264147	0.143072	0.133676
chr3	168075055	168075155	1854731	0	-	0.31	(0.28,0.32]	chr3	186419	263	INTRON	INTRON	GOLIM4	ENSG00000173905.9	ENST00000470487.6:ENST00000309027.4	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.23719	4.28742	4.33765	0.039714	0.0264147	0.143072	0.133676
chr4	123072683	123072783	2037139	0	+	0.31	(0.28,0.32]	chr4	202374	150	INTRON	INTRON	SPATA5	ENSG00000145375.9	ENST00000675612.1:ENST00000274008.5:ENST00000422835.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	28	2	4.23719	4.28742	4.33765	0.039714	0.0264147	0.143072	0.133676
chr5	87317547	87317647	2411285	0	+	0.3	(0.28,0.32]	chr5	232377	479	INTRON	INTRON	RASA1	ENSG00000145715.15	ENST00000274376.11:ENST00000515800.6:ENST00000456692.6:ENST00000506290.1:ENST00000512763.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	28	2	4.23719	4.28742	4.33765	0.039714	0.0264147	0.143072	0.133676
chr7	66481999	66482099	3539320	0	-	0.31	(0.28,0.32]	chr7	330189	4	SS3_PROX	SS3_PROX:INTRON	LINC00174	ENSG00000179406.9	ENST00000638517.1:ENST00000640964.1:ENST00000442578.5:ENST00000639086.1:ENST00000638592.1:ENST00000450353.3:ENST00000429320.1	lncRNA	lncRNA	lncRNA	lncRNA	0	28	2	4.23719	4.28742	4.33765	0.039714	0.0264147	0.143072	0.133676
chr7	111370574	111370674	3622188	0	-	0.29	(0.28,0.32]	chr7	337093	4067	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	28	2	4.23719	4.28742	4.33765	0.039714	0.0264147	0.143072	0.133676
chr7	129474296	129474395	3411973	0	+	0.292929	(0.28,0.32]	chr7	318984	32	INTRON	INTRON	STRIP2	ENSG00000128578.10	ENST00000249344.7:ENST00000435494.2	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.23719	4.28742	4.33765	0.039714	0.0264147	0.143072	0.133676
chr3	154276456	154276552	1843030	0	-	0.34375	(0.32,0.35]	chr3	185346	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DHX36	ENSG00000174953.14	ENST00000496811.6:ENST00000308361.10:ENST00000495598.1:ENST00000329463.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	61	2	3.61507	4.28739	4.95971	0.00663522	6.48785e-4	0.0703181	0.0230814
chr10	12219963	12220063	4394607	0	+	0.51	(0.476,0.515]	chr10	405465	21	INTRON	INTRON	CDC123	ENSG00000151465.14	ENST00000429258.6:ENST00000455773.7:ENST00000281141.9:ENST00000378900.6:ENST00000442050.5:ENST00000498747.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	26	2	4.24501	4.28708	4.32915	0.0247713	0.0124637	0.12011	0.0973643
chr10	22553968	22554068	4578882	0	-	0.49	(0.476,0.515]	chr10	421979	28	INTRON	INTRON	PIP4K2A	ENSG00000150867.14	ENST00000376573.9:ENST00000323883.11:ENST00000545335.5:ENST00000604912.1	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.24501	4.28708	4.32915	0.0247713	0.0124637	0.12011	0.0973643
chr11	47288767	47288867	4788448	0	+	0.49	(0.476,0.515]	chr11	443053	4	SS3_PROX	SS3_PROX:INTRON	MADD	ENSG00000110514.19	ENST00000342922.8:ENST00000402799.5:ENST00000406482.5:ENST00000349238.7:ENST00000311027.9:ENST00000407859.7:ENST00000395344.7:ENST00000395336.7:ENST00000402192.6:ENST00000524530.5:ENST00000524686.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	26	2	4.24501	4.28708	4.32915	0.0247713	0.0124637	0.12011	0.0973643
chr11	66135650	66135750	4808525	0	+	0.5	(0.476,0.515]	chr11	447345	142	INTRON	INTRON	PACS1	ENSG00000175115.13	ENST00000320580.9:ENST00000527224.1:ENST00000533756.5:ENST00000527380.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	26	2	4.24501	4.28708	4.32915	0.0247713	0.0124637	0.12011	0.0973643
chr14	56989875	56989974	5902414	0	-	0.484848	(0.476,0.515]	chr14	560638	216	INTRON	INTRON	ENSG00000286257	ENSG00000286257.2	ENST00000651959.1:ENST00000669773.1:ENST00000669623.1:ENST00000666046.1:ENST00000653538.1:ENST00000670848.1:ENST00000661639.1	lncRNA	lncRNA	lncRNA	lncRNA	0	26	2	4.24501	4.28708	4.32915	0.0247713	0.0124637	0.12011	0.0973643
chr16	30857218	30857318	6474544	0	-	0.51	(0.476,0.515]	chr16	625961	45	INTRON	INTRON	BCL7C	ENSG00000099385.12	ENST00000380317.8:ENST00000574418.5:ENST00000572628.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	26	2	4.24501	4.28708	4.32915	0.0247713	0.0124637	0.12011	0.0973643
chr16	81092686	81092784	6531241	0	-	0.479592	(0.476,0.515]	chr16	632741	12	INTRON	INTRON	ENSG00000260643:GCSH	ENSG00000260643.2:ENSG00000140905.11	ENST00000638948.1:ENST00000564536.2:ENST00000640370.1:ENST00000315467.9:ENST00000564386.6:ENST00000639689.1:ENST00000639169.1:ENST00000569885.6:ENST00000561801.2:ENST00000566566.2:ENST00000564477.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	26	2	4.24501	4.28708	4.32915	0.0247713	0.0124637	0.12011	0.0973643
chr17	59918376	59918476	6644024	0	+	0.5	(0.476,0.515]	chr17	648827	33	INTRON	INTRON	RPS6KB1	ENSG00000108443.14	ENST00000393021.7:ENST00000472940.5:ENST00000225577.9:ENST00000443572.6:ENST00000489824.1:ENST00000406116.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	26	2	4.24501	4.28708	4.32915	0.0247713	0.0124637	0.12011	0.0973643
chr20	35483234	35483333	7335286	0	-	0.494949	(0.476,0.515]	chr20	747226	16	INTRON	INTRON	CEP250-AS1	ENSG00000230155.7	ENST00000453914.2:ENST00000416260.1:ENST00000444933.5	lncRNA	lncRNA	lncRNA	lncRNA	0	26	2	4.24501	4.28708	4.32915	0.0247713	0.0124637	0.12011	0.0973643
chr5	150507339	150507439	2519897	0	+	0.5	(0.476,0.515]	chr5	241017	87	INTRON	INTRON	NDST1	ENSG00000070614.15	ENST00000522491.1:ENST00000519157.1:ENST00000524161.1:ENST00000523767.5:ENST00000518299.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	26	2	4.24501	4.28708	4.32915	0.0247713	0.0124637	0.12011	0.0973643
chr7	6419950	6420048	3477702	0	-	0.489796	(0.476,0.515]	chr7	325383	23	INTRON	INTRON	DAGLB	ENSG00000164535.15	ENST00000462934.5:ENST00000297056.11:ENST00000425398.6:ENST00000436575.5:ENST00000454738.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	26	2	4.24501	4.28708	4.32915	0.0247713	0.0124637	0.12011	0.0973643
chr17	22110293	22110393	6578766	0	+	0.2	[0,0.28]	chr17	639556	190	INTRON	INTRON	UBBP4	ENSG00000263563.7	ENST00000648259.1:ENST00000688301.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	1	67	2	3.18138	4.2867999999999995	5.39222	0.00487606	0.00453865	0.0640618	0.0595107
chr8	29050741	29050829	3726477	0	+	0.261364	[0,0.28]	chr8	346327	2	SS3_PROX	SS3_PROX:INTRON	HMBOX1	ENSG00000147421.18	ENST00000287701.15:ENST00000397358.7:ENST00000521516.5:ENST00000519047.5:ENST00000355231.9:ENST00000524238.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	67	2	3.18138	4.2867999999999995	5.39222	0.00487606	0.00453865	0.0640618	0.0595107
chr9	105774962	105775060	4183354	0	+	0.27551	[0,0.28]	chr9	381530	10	UTR3	UTR3:EXON_MRNA	TMEM38B	ENSG00000095209.12	ENST00000374692.8:ENST00000374688.5	protein_coding	protein_coding	protein_coding	protein_coding	1	67	2	3.13926	4.286770000000001	5.43428	0.00563224	0.00400834	0.0678837	0.0551303
chr7	148854404	148854504	3670464	0	-	0.41	(0.408,0.44]	chr7	340628	67	INTRON	INTRON	EZH2	ENSG00000106462.12	ENST00000683292.1:ENST00000320356.7:ENST00000492143.5:ENST00000478654.5:ENST00000350995.6:ENST00000460911.5:ENST00000683744.1:ENST00000682317.1:ENST00000682263.1:ENST00000684300.1:ENST00000476773.5:ENST00000483967.5:ENST00000498186.5:ENST00000483012.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	59	2	3.33067	4.28667	5.24267	0.0024459	4.83767e-4	0.0445752	0.0199261
chr1	207693352	207693452	304434	0	+	0.51	(0.476,0.515]	chr1	35014	90	INTRON	INTRON	CR1L	ENSG00000197721.17	ENST00000508064.7:ENST00000530905.1:ENST00000294997.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	55	2	3.07422	4.286445	5.49867	0.00506023	4.28561e-4	0.0646039	0.0189958
chr2	53880355	53880455	1119619	0	-	0.43	(0.408,0.44]	chr2	119877	42	INTRON	INTRON	PSME4	ENSG00000068878.15	ENST00000404125.6:ENST00000389993.7:ENST00000476586.5:ENST00000466539.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	55	2	3.55215	4.286215	5.02028	0.00303216	7.01039e-4	0.0493883	0.0241881
chr4	1900125	1900225	1910863	0	+	0.44	(0.408,0.44]	chr4	191734	1	SS3_PROX	SS3_PROX:INTRON	NSD2	ENSG00000109685.19	ENST00000508803.6:ENST00000507820.5:ENST00000508355.5:ENST00000514045.5:ENST00000515806.1:ENST00000398261.6:ENST00000382891.9:ENST00000353275.9:ENST00000382892.6:ENST00000382895.7:ENST00000312087.10:ENST00000420906.6:ENST00000503128.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	55	2	3.55215	4.286215	5.02028	0.00303216	7.01039e-4	0.0493883	0.0241881
chr2	168824917	168825017	905753	0	+	0.51	(0.476,0.515]	chr2	99867	2	SS5_PROX	SS5_PROX:INTRON	NOSTRIN	ENSG00000163072.16	ENST00000458381.6:ENST00000444448.6:ENST00000439509.5:ENST00000445023.6:ENST00000397206.6:ENST00000317647.12:ENST00000397209.6:ENST00000447264.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	58	2	3.33416	4.285925	5.23769	0.00230489	5.17244e-4	0.0428247	0.0203753
chr1	52867877	52867977	105164	0	+	0.28	[0,0.28]	chr1	13759	1	SS5_PROX	SS5_PROX:INTRON	ZYG11A	ENSG00000203995.10	ENST00000371532.5:ENST00000612017.4:ENST00000371528.2	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	4.1879	4.285885	4.38387	0.0501911	0.0396579	0.161534	0.156383
chr10	5441813	5441913	4384153	0	+	0.19	[0,0.28]	chr10	404406	122	INTRON	INTRON	NET1	ENSG00000173848.19	ENST00000355029.9	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	4.1879	4.285885	4.38387	0.0501911	0.0396579	0.161534	0.156383
chr10	12075878	12075978	4393442	0	+	0.25	[0,0.28]	chr10	405238	63	INTRON	INTRON	DHTKD1	ENSG00000181192.12	ENST00000263035.9:ENST00000437298.1	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	4.1879	4.285885	4.38387	0.0501911	0.0396579	0.161534	0.156383
chr12	50423179	50423278	5136559	0	+	0.232323	[0,0.28]	chr12	484374	19	INTRON	INTRON	LARP4	ENSG00000161813.23	ENST00000550522.5:ENST00000293618.12:ENST00000429001.7:ENST00000398473.7:ENST00000548174.5:ENST00000548697.5:ENST00000548993.5:ENST00000522085.5:ENST00000518444.5:ENST00000551886.5:ENST00000523389.5:ENST00000518561.5:ENST00000347328.9:ENST00000550260.1:ENST00000517559.5:ENST00000552445.1	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	4.1879	4.285885	4.38387	0.0501911	0.0396579	0.161534	0.156383
chr13	59910734	59910834	5601819	0	-	0.21	[0,0.28]	chr13	535431	309	INTRON	INTRON	DIAPH3	ENSG00000139734.19	ENST00000400324.9:ENST00000377908.6:ENST00000400319.5:ENST00000400320.5:ENST00000267215.8:ENST00000465066.5:ENST00000498416.2	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	4.1879	4.285885	4.38387	0.0501911	0.0396579	0.161534	0.156383
chr19	55107820	55107918	7212592	0	-	0.204082	[0,0.28]	chr19	732371	39	INTRON	INTRON	PPP1R12C	ENSG00000125503.13	ENST00000263433.8:ENST00000435544.6:ENST00000592993.1	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	4.1879	4.285885	4.38387	0.0501911	0.0396579	0.161534	0.156383
chr2	43475411	43475511	1108190	0	-	0.26	[0,0.28]	chr2	118743	123	INTRON	INTRON	THADA	ENSG00000115970.19	ENST00000405975.7:ENST00000407351.5:ENST00000398653.5:ENST00000405006.8:ENST00000408045.7:ENST00000402796.5:ENST00000469323.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	29	2	4.1879	4.285885	4.38387	0.0501911	0.0396579	0.161534	0.156383
chr21	10443942	10444042	7368434	0	+	0.22	[0,0.28]	chr21	751975	287	INTRON	INTRON	BAGE2	ENSG00000187172.15	ENST00000474011.5:ENST00000470054.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	29	2	4.1879	4.285885	4.38387	0.0501911	0.0396579	0.161534	0.156383
chr21	22285005	22285105	7385218	0	+	0.23	[0,0.28]	chr21	752727	718	INTRON	INTRON	ENSG00000226043	ENSG00000226043.2	ENST00000667099.1:ENST00000654607.1:ENST00000444130.1	lncRNA	lncRNA	lncRNA	lncRNA	0	29	2	4.1879	4.285885	4.38387	0.0501911	0.0396579	0.161534	0.156383
chr3	37356579	37356678	1396914	0	+	0.252525	[0,0.28]	chr3	146458	10	INTRON	INTRON	GOLGA4	ENSG00000144674.17	ENST00000444882.5:ENST00000356847.8:ENST00000361924.7:ENST00000437131.1	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	4.1879	4.285885	4.38387	0.0501911	0.0396579	0.161534	0.156383
chr4	24545201	24545299	2118613	0	-	0.214286	[0,0.28]	chr4	209224	18	INTRON	INTRON	DHX15	ENSG00000109606.13	ENST00000336812.5	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	4.1879	4.285885	4.38387	0.0501911	0.0396579	0.161534	0.156383
chr4	183149609	183149709	2084284	0	+	0.25	[0,0.28]	chr4	205959	496	INTRON	INTRON	WWC2	ENSG00000151718.16	ENST00000403733.8:ENST00000508614.5:ENST00000448232.6:ENST00000513834.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	29	2	4.1879	4.285885	4.38387	0.0501911	0.0396579	0.161534	0.156383
chr5	131707727	131707824	2719844	0	-	0.247423	[0,0.28]	chr5	255690	8	INTRON	INTRON	FNIP1	ENSG00000217128.13	ENST00000510461.6:ENST00000307954.12:ENST00000307968.11:ENST00000511848.1	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	4.1879	4.285885	4.38387	0.0501911	0.0396579	0.161534	0.156383
chr7	6821493	6821588	3478859	0	-	0.242105	[0,0.28]	chr7	325579	12	INTRON	INTRON	CCZ1B	ENSG00000146574.16	ENST00000316731.13:ENST00000626257.2:ENST00000411858.1:ENST00000490178.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	29	2	4.1879	4.285885	4.38387	0.0501911	0.0396579	0.161534	0.156383
chr7	50705423	50705523	3531788	0	-	0.22	[0,0.28]	chr7	329471	1	SS3_PROX	SS3_PROX:INTRON	GRB10	ENSG00000106070.20	ENST00000335866.7:ENST00000398812.6:ENST00000401949.6:ENST00000402578.5:ENST00000644769.1:ENST00000403097.6:ENST00000644879.1:ENST00000406641.5:ENST00000402497.6:ENST00000357271.9:ENST00000643299.1:ENST00000407526.6:ENST00000645075.2:ENST00000439044.7:ENST00000644716.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	29	2	4.1879	4.285885	4.38387	0.0501911	0.0396579	0.161534	0.156383
chr8	22483216	22483315	3713742	0	+	0.252525	[0,0.28]	chr8	344885	72	INTRON	INTRON	PPP3CC	ENSG00000120910.15	ENST00000518852.5:ENST00000240139.10:ENST00000289963.12:ENST00000397775.7:ENST00000522034.5	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	4.1879	4.285885	4.38387	0.0501911	0.0396579	0.161534	0.156383
chr8	51866981	51867080	3946273	0	-	0.232323	[0,0.28]	chr8	362034	54	INTRON	INTRON	PCMTD1	ENSG00000168300.14	ENST00000544451.2:ENST00000360540.9:ENST00000522514.6:ENST00000519559.1:ENST00000521344.1:ENST00000521046.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	29	2	4.1879	4.285885	4.38387	0.0501911	0.0396579	0.161534	0.156383
chr8	116675973	116676073	4033427	0	-	0.26	[0,0.28]	chr8	368046	166	INTRON	INTRON	EIF3H	ENSG00000147677.12	ENST00000521861.6:ENST00000276682.8:ENST00000518949.5:ENST00000518995.5:ENST00000522800.5:ENST00000518034.5:ENST00000517974.1:ENST00000522453.1:ENST00000519046.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	29	2	4.1879	4.285885	4.38387	0.0501911	0.0396579	0.161534	0.156383
chr8	29052381	29052479	3726495	0	+	0.265306	[0,0.28]	chr8	346333	9	UTR3	UTR3:EXON_MRNA:INTRON	HMBOX1	ENSG00000147421.18	ENST00000287701.15:ENST00000397358.7:ENST00000522468.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	68	2	2.90797	4.28585	5.66373	0.0118539	0.00196371	0.0962115	0.0401678
chr5	95768566	95768666	2431626	0	+	0.43	(0.408,0.44]	chr5	233681	4	SS5_PROX	SS5_PROX:INTRON	RHOBTB3	ENSG00000164292.13	ENST00000379982.8:ENST00000504179.5:ENST00000510313.1	protein_coding	protein_coding	protein_coding	protein_coding	1	55	2	3.08738	4.28577	5.48416	0.00478231	5.43528e-4	0.0636201	0.0215026
chr1	77963251	77963340	494357	0	-	0.303371	(0.28,0.32]	chr1	58513	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	FUBP1	ENSG00000162613.17	ENST00000370768.7:ENST00000294623.8:ENST00000370767.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	63	2	3.47062	4.285655	5.10069	0.00610574	0.00137212	0.0676501	0.0340241
chr11	592158	592258	4719732	0	+	0.51	(0.476,0.515]	chr11	436183	2	SS3_PROX	SS3_PROX:INTRON	PHRF1	ENSG00000070047.13	ENST00000264555.10:ENST00000416188.3:ENST00000534320.5:ENST00000413872.6:ENST00000533464.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	215	2	3.56157	4.285615	5.00966	1.55198e-6	3.16287e-7	7.4731e-4	3.0658e-4
chr5	143354918	143355018	2742042	0	-	0.25	[0,0.28]	chr5	258577	404	INTRON	INTRON	NR3C1	ENSG00000113580.15	ENST00000343796.6:ENST00000394464.7:ENST00000415690.6:ENST00000424646.6:ENST00000504572.5:ENST00000394466.6:ENST00000231509.7:ENST00000652686.1:ENST00000503201.1:ENST00000504336.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	67	2	3.2223	4.2856000000000005	5.3489	0.00514751	0.00422777	0.062965	0.0595466
chr1	9932625	9932702	376191	0	-	0.454545	(0.44,0.476]	chr1	43849	3	SS5_PROX	SS5_PROX:INTRON	LZIC	ENSG00000162441.12	ENST00000488540.5:ENST00000377223.6:ENST00000400903.6:ENST00000377213.1	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.23755	4.285505	4.33346	0.0263357	0.0120349	0.122221	0.0962115
chr11	47734728	47734827	4951078	0	-	0.454545	(0.44,0.476]	chr11	464406	2	INTRON	INTRON	FNBP4	ENSG00000109920.13	ENST00000263773.10:ENST00000528388.5:ENST00000534003.5:ENST00000527894.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	26	2	4.23755	4.285505	4.33346	0.0263357	0.0120349	0.122221	0.0962115
chr13	45514147	45514247	5481244	0	+	0.46	(0.44,0.476]	chr13	525177	19	INTRON	INTRON	COG3	ENSG00000136152.15	ENST00000349995.10	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.23755	4.285505	4.33346	0.0263357	0.0120349	0.122221	0.0962115
chr14	102026373	102026473	5820909	0	+	0.24	[0,0.28]	chr14	552194	4	SS3_PROX	SS3_PROX:INTRON	DYNC1H1	ENSG00000197102.14	ENST00000360184.10:ENST00000684561.1:ENST00000680313.1:ENST00000679720.1:ENST00000680715.1:ENST00000681283.1:ENST00000681822.1:ENST00000679910.1:ENST00000681574.1:ENST00000645039.2:ENST00000645149.2:ENST00000680200.1:ENST00000680120.1:ENST00000644881.2:ENST00000681066.1:ENST00000680423.1:ENST00000681536.1:ENST00000679486.1:ENST00000681010.1:ENST00000679629.1:ENST00000681123.1:ENST00000680874.1:ENST00000680137.1:ENST00000643508.2:ENST00000680808.1:ENST00000681311.1:ENST00000647366.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	67	2	3.09587	4.285505	5.47514	0.00651565	0.00354561	0.0735232	0.0529186
chr17	27469316	27469416	6580894	0	+	0.47	(0.44,0.476]	chr17	639655	121	INTRON	INTRON	KSR1	ENSG00000141068.15	ENST00000644974.2:ENST00000579309.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	26	2	4.23755	4.285505	4.33346	0.0263357	0.0120349	0.122221	0.0962115
chr19	10223167	10223264	7135171	0	-	0.443299	(0.44,0.476]	chr19	719288	19	UTR3	UTR3:EXON_MRNA:INTRON	DNMT1:S1PR2	ENSG00000130816.17:ENSG00000267534.4	ENST00000588952.5:ENST00000592342.5:ENST00000646641.1	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.23755	4.285505	4.33346	0.0263357	0.0120349	0.122221	0.0962115
chr2	108873450	108873519	848991	0	+	0.449275	(0.44,0.476]	chr2	95013	1	CDS	CDS:EXON_MRNA:INTRON	CCDC138	ENSG00000163006.12	ENST00000412964.6:ENST00000409529.6:ENST00000295124.9:ENST00000608781.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	26	2	4.23755	4.285505	4.33346	0.0263357	0.0120349	0.122221	0.0962115
chr2	180991544	180991644	936081	0	+	0.45	(0.44,0.476]	chr2	102627	16	INTRON	INTRON	UBE2E3	ENSG00000170035.16	ENST00000602303.5:ENST00000602959.5:ENST00000602479.5:ENST00000392415.6:ENST00000602291.5:ENST00000410062.9:ENST00000602499.5:ENST00000602710.5:ENST00000602762.5:ENST00000602888.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	26	2	4.23755	4.285505	4.33346	0.0263357	0.0120349	0.122221	0.0962115
chr2	233286604	233286703	1039722	0	+	0.464646	(0.44,0.476]	chr2	110942	35	INTRON	INTRON	ATG16L1	ENSG00000085978.22	ENST00000347464.9:ENST00000373525.9:ENST00000392021.7:ENST00000392017.9:ENST00000479942.5:ENST00000474148.5:ENST00000392020.8:ENST00000392018.1:ENST00000498620.5:ENST00000464645.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	26	2	4.23755	4.285505	4.33346	0.0263357	0.0120349	0.122221	0.0962115
chr21	14535645	14535745	7428098	0	-	0.45	(0.44,0.476]	chr21	757769	119	INTRON	INTRON	SAMSN1	ENSG00000155307.19	ENST00000647101.1:ENST00000644288.1:ENST00000400564.5:ENST00000400566.6:ENST00000285670.7:ENST00000619120.4:ENST00000493640.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	26	2	4.23755	4.285505	4.33346	0.0263357	0.0120349	0.122221	0.0962115
chr3	42632200	42632300	1406298	0	+	0.45	(0.44,0.476]	chr3	147687	2	SS3_PROX	SS3_PROX:INTRON	NKTR	ENSG00000114857.19	ENST00000468735.6:ENST00000429888.5:ENST00000232978.13:ENST00000465584.5:ENST00000498730.5:ENST00000472127.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	26	2	4.23755	4.285505	4.33346	0.0263357	0.0120349	0.122221	0.0962115
chr3	177045331	177045430	1870900	0	-	0.454545	(0.44,0.476]	chr3	187322	43	INTRON	INTRON	TBL1XR1	ENSG00000177565.18	ENST00000457928.7:ENST00000430069.5:ENST00000637659.1:ENST00000673974.1:ENST00000631253.2:ENST00000352800.10:ENST00000422442.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	26	2	4.23755	4.285505	4.33346	0.0263357	0.0120349	0.122221	0.0962115
chr5	233743	233842	2312372	0	+	0.444444	(0.44,0.476]	chr5	223659	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	SDHA	ENSG00000073578.18	ENST00000504309.5:ENST00000505555.5:ENST00000510361.5:ENST00000264932.11:ENST00000504824.5:ENST00000514027.5:ENST00000515752.5:ENST00000512962.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	26	2	4.23755	4.285505	4.33346	0.0263357	0.0120349	0.122221	0.0962115
chr5	36973419	36973517	2339406	0	+	0.459184	(0.44,0.476]	chr5	225992	10	INTRON	INTRON	NIPBL	ENSG00000164190.19	ENST00000282516.13:ENST00000448238.2:ENST00000652901.1:ENST00000505998.5:ENST00000504430.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	26	2	4.23755	4.285505	4.33346	0.0263357	0.0120349	0.122221	0.0962115
chr8	73657792	73657892	3970022	0	-	0.46	(0.44,0.476]	chr8	364130	35	INTRON	INTRON	STAU2	ENSG00000040341.18	ENST00000524300.6:ENST00000522695.5:ENST00000523558.5:ENST00000521210.5:ENST00000355780.9:ENST00000519961.5:ENST00000521727.5:ENST00000521451.5:ENST00000522509.5:ENST00000517542.5:ENST00000518981.5:ENST00000518767.5:ENST00000518502.5:ENST00000521293.5:ENST00000521447.5:ENST00000524104.5:ENST00000522962.5:ENST00000521419.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	26	2	4.23755	4.285505	4.33346	0.0263357	0.0120349	0.122221	0.0962115
chr9	112512799	112512899	4186048	0	+	0.46	(0.44,0.476]	chr9	381813	253	INTRON	INTRON	KIAA1958	ENSG00000165185.15	ENST00000337530.11:ENST00000536272.5:ENST00000374244.3	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.23755	4.285505	4.33346	0.0263357	0.0120349	0.122221	0.0962115
chrX	119874663	119874760	7713626	0	+	0.463918	(0.44,0.476]	chrX	789274	9	INTRON	INTRON	NDUFA1	ENSG00000125356.7	ENST00000371437.5	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.23755	4.285505	4.33346	0.0263357	0.0120349	0.122221	0.0962115
chrX	134426219	134426318	7724041	0	+	0.464646	(0.44,0.476]	chrX	790147	10	UTR3	UTR3:EXON_MRNA	PHF6	ENSG00000156531.18	ENST00000687496.1:ENST00000685553.1:ENST00000625464.2:ENST00000370803.8:ENST00000332070.7:ENST00000691812.1:ENST00000688598.1:ENST00000693759.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	26	2	4.23755	4.285505	4.33346	0.0263357	0.0120349	0.122221	0.0962115
chr2	54996293	54996393	1120862	0	-	0.31	(0.28,0.32]	chr2	120142	82	INTRON	INTRON	RTN4	ENSG00000115310.19	ENST00000394609.6:ENST00000404909.5:ENST00000394611.6:ENST00000317610.11:ENST00000357732.8:ENST00000337526.11:ENST00000357376.7:ENST00000405240.5:ENST00000438462.1	protein_coding	protein_coding	protein_coding	protein_coding	5	130	2	2.46223	4.284409999999999	6.10659	8.96176e-4	1.73268e-4	0.0273866	0.0120833
chr6	106263802	106263902	3177540	0	-	0.36	(0.35,0.378]	chr6	296175	152	INTRON	INTRON	ATG5	ENSG00000057663.16	ENST00000636437.1:ENST00000636335.1:ENST00000369070.5:ENST00000369076.8:ENST00000635758.2:ENST00000360666.6:ENST00000343245.7:ENST00000646025.1:ENST00000613993.1:ENST00000476518.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	57	2	3.16371	4.2840799999999994	5.40445	0.00383956	0.00114224	0.0562562	0.0307966
chr1	19090848	19090946	385502	0	-	0.520408	(0.515,0.57]	chr1	45644	15	INTRON	INTRON	UBR4	ENSG00000127481.15	ENST00000375254.8:ENST00000375224.1	protein_coding	protein_coding	protein_coding	protein_coding	2	69	2	2.51561	4.2838650000000005	6.05212	0.00635044	1.09838e-5	0.0723103	0.00262193
chr11	78117984	78118084	4998117	0	-	0.55	(0.515,0.57]	chr11	472349	28	INTRON	INTRON	ALG8	ENSG00000159063.14	ENST00000679559.1:ENST00000680398.1:ENST00000681221.1:ENST00000527099.2:ENST00000681489.1:ENST00000525783.6:ENST00000529139.6:ENST00000680761.1:ENST00000525870.6:ENST00000680866.1:ENST00000680223.1:ENST00000526737.6:ENST00000681575.1:ENST00000299626.10:ENST00000680467.1:ENST00000679497.1:ENST00000681351.1:ENST00000679697.1:ENST00000680580.1:ENST00000526849.6:ENST00000680256.1:ENST00000680797.1:ENST00000681723.1:ENST00000680142.1:ENST00000679685.1:ENST00000681384.1:ENST00000679874.1:ENST00000679444.1:ENST00000680459.1:ENST00000681699.1:ENST00000679986.1:ENST00000680063.1:ENST00000530608.6:ENST00000681765.1:ENST00000681225.1:ENST00000681417.1:ENST00000530910.6:ENST00000680329.1:ENST00000679581.1:ENST00000524925.2:ENST00000681853.1:ENST00000376156.7:ENST00000679648.1:ENST00000680101.1:ENST00000680829.1:ENST00000680499.1:ENST00000525761.3:ENST00000532440.6:ENST00000680996.1:ENST00000532306.6:ENST00000680399.1:ENST00000679539.1:ENST00000615266.5:ENST00000681957.1:ENST00000532552.2:ENST00000680643.1:ENST00000530454.6:ENST00000525755.6:ENST00000532050.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	52	2	3.2024	4.2834	5.3644	0.00322022	1.52226e-4	0.0507087	0.0106137
chr1	67254139	67254239	141259	0	+	0.48	(0.476,0.515]	chr1	15789	135	INTRON	INTRON	IL23R	ENSG00000162594.16	ENST00000637002.1:ENST00000347310.10:ENST00000425614.3:ENST00000473881.2:ENST00000395227.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	26	2	4.13586	4.2833950000000005	4.43093	0.031846	0.00931369	0.13151	0.0855292
chr1	226296832	226296928	647732	0	-	0.479167	(0.476,0.515]	chr1	76739	5	INTRON	INTRON	LIN9	ENSG00000183814.16	ENST00000460719.5:ENST00000366808.6:ENST00000328205.9:ENST00000681046.1:ENST00000481685.1:ENST00000359525.2	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.13586	4.2833950000000005	4.43093	0.031846	0.00931369	0.13151	0.0855292
chr10	116914387	116914484	4699580	0	-	0.494845	(0.476,0.515]	chr10	433628	22	INTRON	INTRON	SHTN1	ENSG00000187164.20	ENST00000355371.9:ENST00000615301.4:ENST00000260777.14:ENST00000497044.5:ENST00000392901.10:ENST00000392903.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	26	2	4.13586	4.2833950000000005	4.43093	0.031846	0.00931369	0.13151	0.0855292
chr13	95211879	95211978	5638976	0	-	0.515152	(0.476,0.515]	chr13	537151	7	INTRON	INTRON	ABCC4	ENSG00000125257.16	ENST00000645237.2:ENST00000643051.1:ENST00000643842.1:ENST00000646439.1:ENST00000643816.1:ENST00000536256.3:ENST00000643556.1:ENST00000629385.1:ENST00000642524.1:ENST00000645532.1:ENST00000644471.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	26	2	4.13586	4.2833950000000005	4.43093	0.031846	0.00931369	0.13151	0.0855292
chr16	89509789	89509889	6420350	0	+	0.51	(0.476,0.515]	chr16	616194	4	INTRON	INTRON	SPG7	ENSG00000197912.16	ENST00000647079.1:ENST00000646303.1:ENST00000643649.1:ENST00000643307.1:ENST00000566371.6:ENST00000644498.1:ENST00000645897.1:ENST00000643668.1:ENST00000644225.1:ENST00000645818.2:ENST00000645977.1:ENST00000645063.1:ENST00000646263.1:ENST00000643724.1:ENST00000644781.1:ENST00000644901.1:ENST00000645042.1:ENST00000646531.1:ENST00000646930.1:ENST00000569363.2:ENST00000642436.1:ENST00000644210.1:ENST00000564047.2:ENST00000646589.1:ENST00000268704.7:ENST00000646826.1:ENST00000646716.1:ENST00000643345.1:ENST00000341316.6:ENST00000645533.1:ENST00000646958.1:ENST00000642371.1:ENST00000643105.1:ENST00000645354.1:ENST00000643957.1:ENST00000642334.1:ENST00000647227.1:ENST00000562775.2:ENST00000568151.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	26	2	4.13586	4.2833950000000005	4.43093	0.031846	0.00931369	0.13151	0.0855292
chr17	62486097	62486197	6652951	0	+	0.5	(0.476,0.515]	chr17	649305	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	TLK2	ENSG00000146872.19	ENST00000582809.5:ENST00000684213.1:ENST00000583843.5:ENST00000579450.5:ENST00000577616.1:ENST00000582195.6:ENST00000682085.1:ENST00000580705.5:ENST00000346027.10:ENST00000326270.13:ENST00000682203.1:ENST00000343388.11:ENST00000683536.1:ENST00000684440.1:ENST00000684772.1:ENST00000682274.1:ENST00000682827.1:ENST00000583690.6:ENST00000682075.1:ENST00000683104.1:ENST00000684012.1:ENST00000581041.5:ENST00000684553.1:ENST00000683737.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	26	2	4.13586	4.2833950000000005	4.43093	0.031846	0.00931369	0.13151	0.0855292
chr19	49648113	49648211	7090194	0	+	0.510204	(0.476,0.515]	chr19	710079	9	INTRON	INTRON	SCAF1	ENSG00000126461.15	ENST00000360565.8:ENST00000598359.5	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.13586	4.2833950000000005	4.43093	0.031846	0.00931369	0.13151	0.0855292
chr2	8888772	8888872	1062413	0	-	0.51	(0.476,0.515]	chr2	113359	3	INTRON	INTRON	MBOAT2	ENSG00000143797.12	ENST00000305997.8:ENST00000486484.5:ENST00000477073.5:ENST00000474341.5:ENST00000462696.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	26	2	4.13586	4.2833950000000005	4.43093	0.031846	0.00931369	0.13151	0.0855292
chr2	86614408	86614505	1171898	0	-	0.505155	(0.476,0.515]	chr2	125070	23	EXON_MRNA	EXON_MRNA:INTRON	RNF103	ENSG00000239305.7	ENST00000237455.5:ENST00000472030.1:ENST00000463333.6:ENST00000477307.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	26	2	4.13586	4.2833950000000005	4.43093	0.031846	0.00931369	0.13151	0.0855292
chr21	33437961	33438055	7440547	0	-	0.478723	(0.476,0.515]	chr21	759313	6	INTRON	INTRON	TMEM50B	ENSG00000142188.17	ENST00000420455.5:ENST00000484377.5:ENST00000470682.5:ENST00000468874.2	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	0	26	2	4.13586	4.2833950000000005	4.43093	0.031846	0.00931369	0.13151	0.0855292
chr21	45412366	45412466	7419579	0	+	0.48	(0.476,0.515]	chr21	756409	65	INTRON	INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.13586	4.2833950000000005	4.43093	0.031846	0.00931369	0.13151	0.0855292
chr3	138761857	138761957	1830768	0	-	0.5	(0.476,0.515]	chr3	184051	21	INTRON	INTRON	PIK3CB	ENSG00000051382.9	ENST00000674063.1:ENST00000477593.5:ENST00000462898.5:ENST00000483968.5:ENST00000465581.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	26	2	4.13586	4.2833950000000005	4.43093	0.031846	0.00931369	0.13151	0.0855292
chr9	120706759	120706859	4334963	0	-	0.51	(0.476,0.515]	chr9	398206	468	INTRON	INTRON	MEGF9	ENSG00000106780.9	ENST00000373930.4	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.13586	4.2833950000000005	4.43093	0.031846	0.00931369	0.13151	0.0855292
chrX	44952983	44953083	7649400	0	+	0.5	(0.476,0.515]	chrX	782726	786	INTRON	INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000675440.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000621147.5:ENST00000475233.1:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	26	2	4.13586	4.2833950000000005	4.43093	0.031846	0.00931369	0.13151	0.0855292
chr1	43674060	43674159	85732	0	+	0.494949	(0.476,0.515]	chr1	11569	18	INTRON	INTRON	KDM4A	ENSG00000066135.13	ENST00000372396.4	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.21964	4.28306	4.34648	0.0193566	0.0167715	0.110511	0.108861
chr1	67237202	67237302	141088	0	+	0.49	(0.476,0.515]	chr1	15782	4	SS5_PROX	SS5_PROX:INTRON	IL23R	ENSG00000162594.16	ENST00000637002.1:ENST00000347310.10:ENST00000425614.3:ENST00000473881.2:ENST00000395227.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	26	2	4.21964	4.28306	4.34648	0.0193566	0.0167715	0.110511	0.108861
chr1	156330463	156330562	566631	0	-	0.494949	(0.476,0.515]	chr1	68009	50	INTRON	INTRON	CCT3	ENSG00000163468.15	ENST00000295688.8:ENST00000368258.7:ENST00000368259.6:ENST00000368262.7:ENST00000472765.6:ENST00000413555.5:ENST00000496684.6:ENST00000533194.5:ENST00000463132.5:ENST00000446905.5:ENST00000490221.5:ENST00000478640.6:ENST00000415548.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	26	2	4.21964	4.28306	4.34648	0.0193566	0.0167715	0.110511	0.108861
chr10	133293969	133294069	4717520	0	-	0.51	(0.476,0.515]	chr10	435472	2	SS3_PROX	SS3_PROX:INTRON	TUBGCP2	ENSG00000130640.15	ENST00000252936.8:ENST00000682123.1:ENST00000683612.1:ENST00000683786.1:ENST00000682515.1:ENST00000682905.1:ENST00000682256.1:ENST00000684478.1:ENST00000682161.1:ENST00000682332.1:ENST00000684487.1:ENST00000683673.1:ENST00000682093.1:ENST00000683014.1:ENST00000682631.1:ENST00000683829.1:ENST00000683060.1:ENST00000683383.1:ENST00000682990.1:ENST00000417178.7:ENST00000482278.5:ENST00000543663.6:ENST00000682712.1:ENST00000683704.1:ENST00000683552.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	26	2	4.21964	4.28306	4.34648	0.0193566	0.0167715	0.110511	0.108861
chr12	50135784	50135838	5322837	0	-	0.5	(0.476,0.515]	chr12	507458	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	CERS5	ENSG00000139624.14	ENST00000317551.12:ENST00000422340.6:ENST00000551697.5:ENST00000380189.8:ENST00000550919.5:ENST00000553122.5:ENST00000547787.5:ENST00000551005.5:ENST00000550547.5:ENST00000438450.6:ENST00000547138.5:ENST00000546676.1:ENST00000542320.5:ENST00000547800.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	26	2	4.21964	4.28306	4.34648	0.0193566	0.0167715	0.110511	0.108861
chr15	72209318	72209391	6219094	0	-	0.493151	(0.476,0.515]	chr15	593547	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PKM	ENSG00000067225.20	ENST00000319622.10:ENST00000389093.7:ENST00000335181.10:ENST00000565184.6:ENST00000567118.5:ENST00000565154.6:ENST00000568459.5:ENST00000561609.5:ENST00000569857.5:ENST00000568743.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	26	2	4.21964	4.28306	4.34648	0.0193566	0.0167715	0.110511	0.108861
chr17	35616279	35616379	6599831	0	+	0.48	(0.476,0.515]	chr17	642258	75	INTRON	INTRON	AP2B1	ENSG00000006125.18	ENST00000616784.4:ENST00000621914.4:ENST00000620039.4:ENST00000616681.4:ENST00000621668.4:ENST00000610402.5:ENST00000612035.4:ENST00000614600.4:ENST00000612116.5:ENST00000618940.4:ENST00000591561.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	26	2	4.21964	4.28306	4.34648	0.0193566	0.0167715	0.110511	0.108861
chr17	39492350	39492450	6607298	0	+	0.48	(0.476,0.515]	chr17	643271	2	SS3_PROX	SS3_PROX:INTRON	CDK12	ENSG00000167258.15	ENST00000447079.6:ENST00000584632.5:ENST00000430627.6:ENST00000581593.1	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.21964	4.28306	4.34648	0.0193566	0.0167715	0.110511	0.108861
chr19	3437791	3437890	7000346	0	+	0.50505	(0.476,0.515]	chr19	694202	22	INTRON	INTRON	NFIC	ENSG00000141905.19	ENST00000641145.1:ENST00000589123.5:ENST00000395111.7:ENST00000586919.5:ENST00000341919.7:ENST00000443272.3:ENST00000590282.5:ENST00000589537.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	26	2	4.21964	4.28306	4.34648	0.0193566	0.0167715	0.110511	0.108861
chr2	97223313	97223413	831996	0	+	0.51	(0.476,0.515]	chr2	93221	37	INTRON	INTRON	ANKRD36	ENSG00000135976.21	ENST00000420699.9:ENST00000652721.1:ENST00000461153.7:ENST00000421946.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	26	2	4.21964	4.28306	4.34648	0.0193566	0.0167715	0.110511	0.108861
chr7	98913292	98913388	3359616	0	+	0.479167	(0.476,0.515]	chr7	313452	7	INTRON	INTRON	TRRAP	ENSG00000196367.14	ENST00000355540.7:ENST00000359863.8:ENST00000628380.2:ENST00000456197.2:ENST00000446306.7	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.21964	4.28306	4.34648	0.0193566	0.0167715	0.110511	0.108861
chr9	34242508	34242608	4111911	0	+	0.5	(0.476,0.515]	chr9	374741	4	SS5_PROX	SS5_PROX:INTRON	UBAP1	ENSG00000165006.14	ENST00000625521.2:ENST00000379186.8:ENST00000297661.9:ENST00000626262.2:ENST00000359544.2	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.21964	4.28306	4.34648	0.0193566	0.0167715	0.110511	0.108861
chr9	123079361	123079461	4196495	0	+	0.5	(0.476,0.515]	chr9	382917	22	INTRON	INTRON	RABGAP1	ENSG00000011454.18	ENST00000456584.5:ENST00000373647.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	26	2	4.21964	4.28306	4.34648	0.0193566	0.0167715	0.110511	0.108861
chr9	124365608	124365708	4346152	0	-	0.49	(0.476,0.515]	chr9	399153	83	INTRON	INTRON	PSMB7	ENSG00000136930.13	ENST00000259457.8:ENST00000498485.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	26	2	4.21964	4.28306	4.34648	0.0193566	0.0167715	0.110511	0.108861
chrX	71380779	71380871	7678357	0	+	0.478261	(0.476,0.515]	chrX	786164	5	INTRON	INTRON	TAF1	ENSG00000147133.17	ENST00000683202.1:ENST00000373790.9:ENST00000423759.6:ENST00000683782.1:ENST00000683715.1:ENST00000683668.1:ENST00000276072.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	26	2	4.21964	4.28306	4.34648	0.0193566	0.0167715	0.110511	0.108861
chrX	153933514	153933586	7911789	0	-	0.5	(0.476,0.515]	chrX	805332	2	SS5_PROX	SS5_PROX:INTRON	ARHGAP4:NAA10	ENSG00000089820.16:ENSG00000102030.16	ENST00000494813.5:ENST00000464845.6:ENST00000370015.8:ENST00000393712.7:ENST00000370009.5:ENST00000466877.5:ENST00000460996.5:ENST00000370011.7:ENST00000432089.1:ENST00000477750.5:ENST00000393710.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	26	2	4.21964	4.28306	4.34648	0.0193566	0.0167715	0.110511	0.108861
chr16	85592127	85592227	6415753	0	+	0.4	(0.378,0.408]	chr16	615470	354	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	5	266	2	3.98348	4.282945	4.58241	3.46435e-7	1.76182e-7	2.99508e-4	2.06704e-4
chr14	21218785	21218884	5834650	0	-	0.525253	(0.515,0.57]	chr14	554424	53	INTRON	INTRON	HNRNPC	ENSG00000092199.19	ENST00000336053.10:ENST00000553300.6:ENST00000554969.5:ENST00000556142.5:ENST00000554455.5:ENST00000430246.6:ENST00000553753.5:ENST00000555309.5:ENST00000555914.5:ENST00000557442.5:ENST00000556628.5:ENST00000556513.5:ENST00000555883.5:ENST00000557201.5:ENST00000556897.5:ENST00000420743.6:ENST00000557157.5:ENST00000554539.5:ENST00000554383.5:ENST00000554417.1:ENST00000555215.5:ENST00000555137.5:ENST00000554891.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	66	2	3.08789	4.28294	5.47799	4.83127e-4	2.09356e-4	0.0199261	0.0131276
chr13	102649236	102649321	5532537	0	+	0.329412	(0.32,0.35]	chr13	528756	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TPP2	ENSG00000134900.12	ENST00000376052.5:ENST00000651448.1:ENST00000376065.8:ENST00000652308.1:ENST00000651544.1:ENST00000651748.1:ENST00000651921.1:ENST00000490420.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	59	2	3.23331	4.282745	5.33218	0.00315414	0.00204346	0.0515261	0.04086
chr21	21209350	21209450	7381103	0	+	0.34	(0.32,0.35]	chr21	752602	2104	INTRON	INTRON	NCAM2	ENSG00000154654.15	ENST00000400546.6	protein_coding	protein_coding	protein_coding	protein_coding	1	59	2	3.23331	4.282745	5.33218	0.00315414	0.00204346	0.0515261	0.04086
chr8	37864302	37864401	3935586	0	-	0.343434	(0.32,0.35]	chr8	360553	8	INTRON	INTRON	RAB11FIP1	ENSG00000156675.16	ENST00000330843.9:ENST00000287263.8:ENST00000522727.5:ENST00000523182.5:ENST00000522774.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	59	2	3.23331	4.282745	5.33218	0.00315414	0.00204346	0.0515261	0.04086
chr20	56456458	56456557	7287901	0	+	0.575758	(0.57,1]	chr20	741449	27	INTRON	INTRON	CASS4	ENSG00000087589.17	ENST00000360314.7:ENST00000679887.1:ENST00000434344.2:ENST00000679529.1	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	3.69168	4.2825050000000005	4.87333	3.21412e-4	2.1608e-4	0.0159645	0.0134537
chr1	235487500	235487597	664286	0	-	0.42268	(0.408,0.44]	chr1	78624	24	INTRON	INTRON	B3GALNT2	ENSG00000162885.14	ENST00000366600.8:ENST00000675193.1:ENST00000676288.1:ENST00000675555.1:ENST00000612859.4:ENST00000313984.3:ENST00000494378.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	26	2	4.23096	4.28248	4.334	0.0278028	0.011982	0.123904	0.0962115
chr13	32519095	32519193	5572651	0	-	0.438776	(0.408,0.44]	chr13	532556	7	INTRON	INTRON	N4BP2L2	ENSG00000244754.9	ENST00000357505.10:ENST00000399396.7:ENST00000504114.5:ENST00000509076.1:ENST00000446957.6:ENST00000674456.1:ENST00000674161.1:ENST00000674422.1:ENST00000674272.1:ENST00000674452.1:ENST00000674384.1:ENST00000505213.5:ENST00000674219.1:ENST00000267068.5:ENST00000674349.1:ENST00000674428.1:ENST00000503814.2:ENST00000674465.1:ENST00000674421.1:ENST00000674180.1:ENST00000674297.1:ENST00000674293.1:ENST00000674480.1:ENST00000674377.1:ENST00000674437.1:ENST00000674327.1:ENST00000674399.1:ENST00000674196.1:ENST00000674163.1:ENST00000511143.5:ENST00000674484.1:ENST00000475731.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	26	2	4.23096	4.28248	4.334	0.0278028	0.011982	0.123904	0.0962115
chr14	73297384	73297484	5917686	0	-	0.44	(0.408,0.44]	chr14	562222	2	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	NUMB	ENSG00000133961.21	ENST00000554546.5:ENST00000535282.5:ENST00000359560.7:ENST00000355058.7:ENST00000544991.7:ENST00000555238.6:ENST00000557597.5:ENST00000356296.8:ENST00000556772.5:ENST00000555394.5:ENST00000559312.5:ENST00000560335.5:ENST00000555738.6:ENST00000554521.6:ENST00000555859.5:ENST00000554394.5:ENST00000555307.5:ENST00000554315.5:ENST00000556989.1:ENST00000555987.5:ENST00000556112.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	26	2	4.23096	4.28248	4.334	0.0278028	0.011982	0.123904	0.0962115
chr14	102002036	102002108	5820630	0	+	0.430556	(0.408,0.44]	chr14	552083	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DYNC1H1	ENSG00000197102.14	ENST00000360184.10:ENST00000684561.1:ENST00000680313.1:ENST00000679720.1:ENST00000680715.1:ENST00000681283.1:ENST00000681822.1:ENST00000679910.1:ENST00000681574.1:ENST00000645039.2:ENST00000645149.2:ENST00000680200.1:ENST00000680120.1:ENST00000644881.2:ENST00000681066.1:ENST00000680423.1:ENST00000681536.1:ENST00000679486.1:ENST00000681010.1:ENST00000679629.1:ENST00000681123.1:ENST00000680874.1:ENST00000680137.1:ENST00000643508.2:ENST00000680808.1:ENST00000681311.1:ENST00000681859.1:ENST00000643684.1:ENST00000643958.2:ENST00000680001.1:ENST00000681668.1:ENST00000645114.2:ENST00000681751.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	26	2	4.23096	4.28248	4.334	0.0278028	0.011982	0.123904	0.0962115
chr17	36586896	36586935	6602287	0	+	0.410256	(0.408,0.44]	chr17	642593	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	GGNBP2	ENSG00000278311.5	ENST00000613102.5:ENST00000615952.1	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.23096	4.28248	4.334	0.0278028	0.011982	0.123904	0.0962115
chr19	19520928	19521028	7036450	0	+	0.42	(0.408,0.44]	chr19	701528	42	INTRON	INTRON	NDUFA13	ENSG00000186010.19	ENST00000502506.6:ENST00000507754.9:ENST00000503283.5:ENST00000428459.6:ENST00000511584.2:ENST00000511180.4:ENST00000606722.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	26	2	4.23096	4.28248	4.334	0.0278028	0.011982	0.123904	0.0962115
chr19	47686743	47686843	7086539	0	+	0.42	(0.408,0.44]	chr19	709045	788	INTRON	INTRON	ENSG00000268746	ENSG00000268746.1	ENST00000599924.1	lncRNA	lncRNA	lncRNA	lncRNA	0	26	2	4.23096	4.28248	4.334	0.0278028	0.011982	0.123904	0.0962115
chr2	174587147	174587247	923305	0	+	0.43	(0.408,0.44]	chr2	101635	393	INTRON	INTRON	ENSG00000236449	ENSG00000236449.2	ENST00000442996.1:ENST00000657063.1:ENST00000412835.1	lncRNA	lncRNA	lncRNA	lncRNA	0	26	2	4.23096	4.28248	4.334	0.0278028	0.011982	0.123904	0.0962115
chr2	186486890	186486958	942817	0	+	0.411765	(0.408,0.44]	chr2	103233	1	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	ZC3H15	ENSG00000065548.18	ENST00000421536.5:ENST00000337859.11:ENST00000437396.1:ENST00000477672.1:ENST00000481101.5:ENST00000468120.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	26	2	4.23096	4.28248	4.334	0.0278028	0.011982	0.123904	0.0962115
chr20	33395984	33396076	7328440	0	-	0.413043	(0.408,0.44]	chr20	746294	5	INTRON	INTRON	CDK5RAP1	ENSG00000101391.21	ENST00000339269.5:ENST00000357886.8:ENST00000346416.7:ENST00000473997.5:ENST00000482967.5:ENST00000481964.5:ENST00000496381.5:ENST00000460043.5:ENST00000471264.5:ENST00000477105.5:ENST00000461356.5:ENST00000488723.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	26	2	4.23096	4.28248	4.334	0.0278028	0.011982	0.123904	0.0962115
chr6	35348948	35349048	2852042	0	+	0.44	(0.408,0.44]	chr6	269491	14	INTRON	INTRON	PPARD	ENSG00000112033.14	ENST00000418635.6:ENST00000448077.6:ENST00000360694.8:ENST00000311565.4:ENST00000337400.6	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.23096	4.28248	4.334	0.0278028	0.011982	0.123904	0.0962115
chr6	68683620	68683720	2886802	0	+	0.42	(0.408,0.44]	chr6	273730	438	INTRON	INTRON	ADGRB3	ENSG00000135298.15	ENST00000370598.6:ENST00000684661.1:ENST00000546190.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	26	2	4.23096	4.28248	4.334	0.0278028	0.011982	0.123904	0.0962115
chr7	6805149	6805244	3478686	0	-	0.410526	(0.408,0.44]	chr7	325553	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	CCZ1B	ENSG00000146574.16	ENST00000316731.13:ENST00000626257.2:ENST00000467004.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	26	2	4.23096	4.28248	4.334	0.0278028	0.011982	0.123904	0.0962115
chr7	152271605	152271705	3679637	0	-	0.44	(0.408,0.44]	chr7	341611	60	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682916.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000684262.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	26	2	4.23096	4.28248	4.334	0.0278028	0.011982	0.123904	0.0962115
chr8	144411355	144411451	4085965	0	-	0.416667	(0.408,0.44]	chr8	371919	11	EXON_MRNA	EXON_MRNA:INTRON	SLC39A4	ENSG00000147804.10	ENST00000527148.5:ENST00000529462.5	protein_coding	retained_intron	protein_coding	retained_intron:processed_transcript	0	26	2	4.23096	4.28248	4.334	0.0278028	0.011982	0.123904	0.0962115
chr9	27417593	27417693	4239002	0	-	0.41	(0.408,0.44]	chr9	389669	580	INTRON	INTRON	MOB3B	ENSG00000120162.10	ENST00000262244.6:ENST00000603061.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	26	2	4.23096	4.28248	4.334	0.0278028	0.011982	0.123904	0.0962115
chr9	130728354	130728454	4214008	0	+	0.41	(0.408,0.44]	chr9	386427	135	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000393293.4	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.23096	4.28248	4.334	0.0278028	0.011982	0.123904	0.0962115
chr4	39895117	39895216	2131358	0	-	0.515152	(0.476,0.515]	chr4	210158	44	INTRON	INTRON	PDS5A	ENSG00000121892.15	ENST00000303538.13	protein_coding	protein_coding	protein_coding	protein_coding	2	77	2	2.69886	4.2821549999999995	5.86545	0.00385209	2.46461e-5	0.0542786	0.00389532
chr1	35360993	35361093	69216	0	+	0.45	(0.44,0.476]	chr1	8740	4	SS3_PROX	SS3_PROX:INTRON	ZMYM4	ENSG00000146463.12	ENST00000314607.11	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.12843	4.28184	4.43525	0.0337192	0.00897296	0.134145	0.0849778
chr1	120798746	120798845	204608	0	+	0.474747	(0.44,0.476]	chr1	22554	49	INTRON	INTRON	NBPF26	ENSG00000273136.8	ENST00000620612.5:ENST00000652763.1:ENST00000651062.1	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.12843	4.28184	4.43525	0.0337192	0.00897296	0.134145	0.0849778
chr11	95812603	95812703	4853754	0	+	0.46	(0.44,0.476]	chr11	452699	3	SS3_PROX	SS3_PROX:INTRON	CEP57	ENSG00000166037.11	ENST00000537677.5:ENST00000325486.9:ENST00000325542.10:ENST00000538095.1:ENST00000544522.5:ENST00000539855.5:ENST00000541365.5:ENST00000535497.1:ENST00000540830.5:ENST00000538658.5:ENST00000541150.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	26	2	4.12843	4.28184	4.43525	0.0337192	0.00897296	0.134145	0.0849778
chr17	1836218	1836318	6546040	0	+	0.45	(0.44,0.476]	chr17	634926	57	INTRON	INTRON	RPA1	ENSG00000132383.12	ENST00000571058.5:ENST00000570451.5:ENST00000254719.10	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.12843	4.28184	4.43525	0.0337192	0.00897296	0.134145	0.0849778
chr17	37457624	37457724	6604144	0	+	0.45	(0.44,0.476]	chr17	642804	66	INTRON	INTRON	TADA2A	ENSG00000276234.5	ENST00000615182.5:ENST00000620628.4:ENST00000614122.4:ENST00000620367.4:ENST00000612272.4:ENST00000615328.4:ENST00000620086.4:ENST00000619777.4:ENST00000619335.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	26	2	4.12843	4.28184	4.43525	0.0337192	0.00897296	0.134145	0.0849778
chr19	4096968	4097068	7119260	0	-	0.46	(0.44,0.476]	chr19	716142	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	MAP2K2	ENSG00000126934.15	ENST00000262948.10:ENST00000689792.1:ENST00000601786.5:ENST00000600584.5:ENST00000688751.1:ENST00000394867.9:ENST00000597263.5:ENST00000688002.1:ENST00000599021.1:ENST00000595715.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	26	2	4.12843	4.28184	4.43525	0.0337192	0.00897296	0.134145	0.0849778
chr19	15369133	15369201	7147598	0	-	0.441176	(0.44,0.476]	chr19	722014	2	UTR3	UTR3:EXON_MRNA:INTRON	AKAP8	ENSG00000105127.10	ENST00000269701.7:ENST00000680461.1:ENST00000681812.1:ENST00000680336.1:ENST00000680245.1:ENST00000681018.1:ENST00000679798.1:ENST00000598597.7:ENST00000599883.2:ENST00000537303.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	26	2	4.12843	4.28184	4.43525	0.0337192	0.00897296	0.134145	0.0849778
chr7	6578846	6578946	3273341	0	+	0.47	(0.44,0.476]	chr7	304355	1	SS5_PROX	SS5_PROX:INTRON	ZDHHC4	ENSG00000136247.15	ENST00000396707.6:ENST00000396713.6:ENST00000405731.7:ENST00000335965.11:ENST00000493944.5:ENST00000489138.5:ENST00000396709.5:ENST00000474097.5:ENST00000483589.5:ENST00000496017.1:ENST00000396706.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	26	2	4.12843	4.28184	4.43525	0.0337192	0.00897296	0.134145	0.0849778
chr7	65063201	65063301	3321624	0	+	0.47	(0.44,0.476]	chr7	308810	243	INTRON	INTRON	CCT6P3	ENSG00000234585.6	ENST00000419314.5:ENST00000426828.5	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript	0	26	2	4.12843	4.28184	4.43525	0.0337192	0.00897296	0.134145	0.0849778
chr8	67067108	67067207	3776645	0	+	0.444444	(0.44,0.476]	chr8	350226	22	INTRON	INTRON	CSPP1	ENSG00000104218.16	ENST00000676113.1:ENST00000675306.2:ENST00000678156.1:ENST00000262210.11:ENST00000678017.1:ENST00000675869.1:ENST00000521919.6:ENST00000678542.1:ENST00000677619.1:ENST00000676605.1:ENST00000676471.1:ENST00000677256.1:ENST00000676847.1:ENST00000677009.1:ENST00000675820.1:ENST00000676317.1:ENST00000677592.1:ENST00000676573.1:ENST00000678318.1:ENST00000677473.1:ENST00000674993.1:ENST00000678553.1:ENST00000678927.1:ENST00000678204.1:ENST00000679226.1:ENST00000676882.1:ENST00000675955.1:ENST00000678728.1:ENST00000677430.1:ENST00000677455.1:ENST00000677071.1:ENST00000678616.1:ENST00000678362.1:ENST00000679112.1:ENST00000678645.1:ENST00000676567.1:ENST00000677845.1:ENST00000519701.5:ENST00000519163.6:ENST00000676858.1:ENST00000678747.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	26	2	4.12843	4.28184	4.43525	0.0337192	0.00897296	0.134145	0.0849778
chr9	131465378	131465478	4217695	0	+	0.45	(0.44,0.476]	chr9	386783	3	SS5_PROX	SS5_PROX:INTRON	PRRC2B	ENSG00000288701.1	ENST00000684596.1:ENST00000683519.1:ENST00000682501.1:ENST00000684736.1	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.12843	4.28184	4.43525	0.0337192	0.00897296	0.134145	0.0849778
chr10	50489631	50489731	4619346	0	-	0.46	(0.44,0.476]	chr10	425446	223	INTRON	INTRON	SGMS1	ENSG00000198964.14	ENST00000429490.5:ENST00000361781.7:ENST00000619438.4:ENST00000609445.5:ENST00000608287.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	26	2	4.22393	4.28146	4.33899	0.0206616	0.0162322	0.110999	0.109464
chr12	111567180	111567280	5412911	0	-	0.47	(0.44,0.476]	chr12	516941	24	INTRON	INTRON	ATXN2	ENSG00000204842.18	ENST00000642389.2:ENST00000608853.5:ENST00000672613.1:ENST00000673436.1:ENST00000643669.2:ENST00000616825.4:ENST00000389153.10:ENST00000550104.5:ENST00000483311.6:ENST00000672335.1:ENST00000673557.1:ENST00000673283.1:ENST00000673449.1:ENST00000535949.5:ENST00000542287.6:ENST00000644883.1:ENST00000647305.1:ENST00000671792.1:ENST00000392645.6:ENST00000672105.1:ENST00000549455.1:ENST00000548492.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	26	2	4.22393	4.28146	4.33899	0.0206616	0.0162322	0.110999	0.109464
chr15	60381344	60381443	6195161	0	-	0.464646	(0.44,0.476]	chr15	590323	63	INTRON	INTRON	ANXA2	ENSG00000182718.18	ENST00000396024.7:ENST00000559818.6:ENST00000679109.1:ENST00000676687.1:ENST00000558169.6:ENST00000557906.6:ENST00000558558.6:ENST00000559113.6:ENST00000559780.6:ENST00000559956.6:ENST00000560468.6:ENST00000678870.1:ENST00000678061.1:ENST00000678450.1:ENST00000677968.1:ENST00000451270.7:ENST00000558985.6:ENST00000678796.1:ENST00000559647.2:ENST00000332680.8:ENST00000560014.5:ENST00000504475.6:ENST00000421017.6:ENST00000560466.5:ENST00000558132.5:ENST00000561022.5:ENST00000560367.6:ENST00000558503.6:ENST00000558998.5:ENST00000559559.5:ENST00000560165.5:ENST00000560389.5:ENST00000559725.5:ENST00000559350.5:ENST00000558986.5:ENST00000677258.1:ENST00000559467.5:ENST00000561445.5:ENST00000557937.5:ENST00000557904.5:ENST00000559370.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	26	2	4.22393	4.28146	4.33899	0.0206616	0.0162322	0.110999	0.109464
chr18	12865374	12865473	6950555	0	-	0.464646	(0.44,0.476]	chr18	687615	13	INTRON	INTRON	PTPN2	ENSG00000175354.20	ENST00000327283.7:ENST00000591115.5:ENST00000353319.8:ENST00000309660.10:ENST00000646492.1:ENST00000645191.1:ENST00000645816.1:ENST00000591305.5:ENST00000592776.1:ENST00000589216.1:ENST00000592059.5:ENST00000643397.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	26	2	4.22393	4.28146	4.33899	0.0206616	0.0162322	0.110999	0.109464
chr2	62383535	62383635	791165	0	+	0.45	(0.44,0.476]	chr2	88716	215	INTRON	INTRON	ENSG00000228541	ENSG00000228541.2	ENST00000689590.1:ENST00000687402.1	lncRNA	lncRNA	lncRNA	lncRNA	0	26	2	4.22393	4.28146	4.33899	0.0206616	0.0162322	0.110999	0.109464
chr22	30812149	30812248	7500268	0	+	0.454545	(0.44,0.476]	chr22	765204	86	INTRON	INTRON	OSBP2	ENSG00000184792.16	ENST00000438716.3:ENST00000407373.5:ENST00000403222.7:ENST00000332585.11:ENST00000446658.6:ENST00000401475.5:ENST00000445781.5:ENST00000477355.5:ENST00000464341.1:ENST00000496367.1:ENST00000424224.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	26	2	4.22393	4.28146	4.33899	0.0206616	0.0162322	0.110999	0.109464
chr6	157419447	157419547	3011925	0	+	0.46	(0.44,0.476]	chr6	281268	368	INTRON	INTRON	ZDHHC14	ENSG00000175048.17	ENST00000414563.6:ENST00000359775.10	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.22393	4.28146	4.33899	0.0206616	0.0162322	0.110999	0.109464
chr7	43905916	43906014	3526736	0	-	0.44898	(0.44,0.476]	chr7	328844	4	EXON_LNCRNA	EXON_LNCRNA:INTRON	URGCP	ENSG00000106608.17	ENST00000497914.5:ENST00000443736.5:ENST00000402306.7:ENST00000453200.6:ENST00000439702.5:ENST00000426198.5:ENST00000455877.5:ENST00000446958.1:ENST00000477768.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	26	2	4.22393	4.28146	4.33899	0.0206616	0.0162322	0.110999	0.109464
chr7	95409110	95409207	3573935	0	-	0.443299	(0.44,0.476]	chr7	332914	17	INTRON	INTRON	PON2	ENSG00000105854.13	ENST00000222572.8:ENST00000633531.1:ENST00000455123.5:ENST00000433091.6:ENST00000633192.1:ENST00000483292.5:ENST00000446142.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	26	2	4.22393	4.28146	4.33899	0.0206616	0.0162322	0.110999	0.109464
chr7	136255210	136255310	3432807	0	+	0.45	(0.44,0.476]	chr7	319921	116	INTRON	INTRON	ENSG00000232053	ENSG00000232053.7	ENST00000657456.1:ENST00000668062.1:ENST00000668668.1:ENST00000445293.6:ENST00000435996.1	lncRNA	lncRNA	lncRNA	lncRNA	0	26	2	4.22393	4.28146	4.33899	0.0206616	0.0162322	0.110999	0.109464
chr8	43075956	43076055	3746051	0	+	0.444444	(0.44,0.476]	chr8	348543	33	INTRON	INTRON	FNTA	ENSG00000168522.13	ENST00000526755.5:ENST00000302279.8:ENST00000527153.5:ENST00000533383.5:ENST00000533998.5:ENST00000531266.5:ENST00000533368.1:ENST00000529687.5:ENST00000533336.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	26	2	4.22393	4.28146	4.33899	0.0206616	0.0162322	0.110999	0.109464
chr5	146225499	146225597	2514335	0	+	0.346939	(0.32,0.35]	chr5	240164	16	INTRON	INTRON	ENSG00000275740:RBM27	ENSG00000275740.1:ENSG00000091009.8	ENST00000506502.2:ENST00000265271.7	protein_coding	protein_coding	protein_coding	protein_coding	3	96	2	2.78953	4.281365	5.7732	7.22336e-4	3.96807e-4	0.0245475	0.0185763
chr11	63709587	63709687	4800195	0	+	0.33	(0.32,0.35]	chr11	444942	43	INTRON	INTRON	RTN3	ENSG00000133318.14	ENST00000341307.6:ENST00000356000.7:ENST00000542238.5:ENST00000538995.1:ENST00000339997.8:ENST00000540798.5:ENST00000537981.5:ENST00000377819.10:ENST00000536011.5:ENST00000543123.1:ENST00000543552.5:ENST00000545432.5:ENST00000338850.5:ENST00000354497.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	59	2	3.3273	4.28125	5.2352	0.0028268	0.00218894	0.0472361	0.0435144
chr2	110643978	110644077	1206507	0	-	0.313131	(0.28,0.32]	chr2	128640	13	INTRON	INTRON	BUB1	ENSG00000169679.15	ENST00000302759.11:ENST00000535254.6:ENST00000409311.5:ENST00000671097.1:ENST00000466333.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	62	2	3.1268	4.28125	5.4357	0.00508956	0.00215368	0.0646039	0.0417866
chr21	10446336	10446436	7368458	0	+	0.5	(0.476,0.515]	chr21	751975	311	INTRON	INTRON	BAGE2	ENSG00000187172.15	ENST00000474011.5:ENST00000470054.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	2	77	2	2.77151	4.281175	5.79084	0.00288481	3.67793e-5	0.0475859	0.00485247
chr18	56002494	56002593	6911120	0	+	0.373737	(0.35,0.378]	chr18	684217	34	INTRON	INTRON	ENSG00000267327	ENSG00000267327.2	ENST00000589440.1:ENST00000666716.1:ENST00000588803.1	lncRNA	lncRNA	lncRNA	lncRNA	2	76	2	2.76192	4.280695	5.79947	0.00265021	2.36402e-4	0.0474328	0.0140941
chr12	57390950	57391050	5338857	0	-	0.39	(0.378,0.408]	chr12	510710	496	INTRON	INTRON	R3HDM2	ENSG00000179912.21	ENST00000402412.6:ENST00000347140.7:ENST00000634871.1:ENST00000448732.1	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	3.82294	4.280665	4.73839	0.044228	0.00837252	0.162255	0.0774402
chr2	168747224	168747324	905076	0	+	0.4	(0.378,0.408]	chr2	99802	289	INTRON	INTRON	CERS6	ENSG00000172292.15	ENST00000392687.4:ENST00000305747.11	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	3.82294	4.280665	4.73839	0.044228	0.00837252	0.162255	0.0774402
chr5	37449166	37449266	2341091	0	+	0.39	(0.378,0.408]	chr5	226239	54	INTRON	INTRON	WDR70	ENSG00000082068.9	ENST00000504564.1:ENST00000511906.5:ENST00000265107.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	28	2	3.82294	4.280665	4.73839	0.044228	0.00837252	0.162255	0.0774402
chr7	139289847	139289946	3437187	0	+	0.393939	(0.378,0.408]	chr7	320271	49	INTRON	INTRON	UBN2	ENSG00000157741.15	ENST00000473989.8	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	3.82294	4.280665	4.73839	0.044228	0.00837252	0.162255	0.0774402
chr7	156725525	156725625	3686316	0	-	0.4	(0.378,0.408]	chr7	341993	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	LMBR1	ENSG00000105983.23	ENST00000353442.10:ENST00000448926.5:ENST00000415428.5:ENST00000454132.5:ENST00000434503.5:ENST00000461603.5:ENST00000486837.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	57	2	2.92665	4.28064	5.63463	0.0086017	3.59226e-4	0.083729	0.0175484
chr5	176384901	176384987	2775323	0	-	0.395349	(0.378,0.408]	chr5	261364	4	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	NOP16	ENSG00000048162.22	ENST00000621444.4:ENST00000614830.5:ENST00000616685.1:ENST00000618911.4:ENST00000502663.5:ENST00000503849.5:ENST00000504821.1:ENST00000509257.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	63	2	2.54849	4.2804850000000005	6.01248	0.0273196	6.62964e-5	0.136494	0.00717086
chr1	51809687	51809780	454584	0	-	0.451613	(0.44,0.476]	chr1	54530	3	SS3_PROX	SS3_PROX:INTRON	NRDC	ENSG00000078618.23	ENST00000354831.11:ENST00000440943.5:ENST00000539524.5:ENST00000352171.12:ENST00000485608.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	54	2	3.25801	4.280455	5.3029	0.00248185	0.00102616	0.0460771	0.029231300000000002
chr16	23482038	23482134	6464289	0	-	0.447917	(0.44,0.476]	chr16	623854	9	INTRON	INTRON	GGA2	ENSG00000103365.15	ENST00000309859.8:ENST00000567468.5	protein_coding	protein_coding	protein_coding	protein_coding	1	54	2	3.25801	4.280455	5.3029	0.00248185	0.00102616	0.0460771	0.029231300000000002
chr7	6251695	6251795	3477175	0	-	0.38	(0.378,0.408]	chr7	325332	391	INTRON	INTRON	CYTH3	ENSG00000008256.16	ENST00000396741.3:ENST00000350796.8:ENST00000482460.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	55	2	3.33026	4.27975	5.22924	0.00189824	0.00172721	0.0402736	0.0374701
chr2	61463759	61463859	1130484	0	-	0.45	(0.44,0.476]	chr2	121499	426	INTRON	INTRON	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000453133.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	55	2	3.59417	4.27954	4.96491	0.0034249	5.78231e-4	0.0517761	0.0218253
chr10	24720243	24720342	4581912	0	-	0.242424	[0,0.28]	chr10	422204	55	INTRON	INTRON	ARHGAP21	ENSG00000107863.20	ENST00000612832.4:ENST00000396432.7:ENST00000376410.7:ENST00000446003.5:ENST00000476499.1:ENST00000416305.1:ENST00000472150.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	67	2	3.30083	4.27949	5.25815	0.0066548	0.00319246	0.0703807	0.0520345
chr7	151117873	151117969	3448676	0	+	0.59375	(0.57,1]	chr7	322195	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	AGAP3	ENSG00000133612.19	ENST00000463381.5:ENST00000397238.7:ENST00000622464.4:ENST00000479901.5:ENST00000473312.5:ENST00000469901.5:ENST00000476375.5:ENST00000492234.5:ENST00000335367.7:ENST00000490839.1:ENST00000467724.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	103	2	3.8535	4.27932	4.70514	2.16864e-7	1.87974e-7	2.38737e-4	2.01544e-4
chr12	123232774	123232874	5444066	0	-	0.55	(0.515,0.57]	chr12	520886	3	SS5_PROX	SS5_PROX:INTRON	MPHOSPH9	ENSG00000051825.15	ENST00000606320.6:ENST00000545556.6:ENST00000537854.5:ENST00000539639.5:ENST00000541437.5:ENST00000538169.5:ENST00000535049.5:ENST00000545406.1:ENST00000369865.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	52	2	3.30665	4.27924	5.25183	0.00213226	2.6074e-4	0.041756	0.014326
chr3	40533389	40533489	1402555	0	+	0.46	(0.44,0.476]	chr3	147394	4	UTR3	UTR3:EXON_MRNA:INTRON	ZNF621	ENSG00000172888.12	ENST00000310898.5:ENST00000403205.6:ENST00000431278.5:ENST00000339296.10:ENST00000490457.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	55	2	3.02366	4.279025	5.53439	0.00603307	4.05863e-4	0.0700813	0.0185763
chr10	87766605	87766705	4662056	0	-	0.37	(0.35,0.378]	chr10	429554	2	SS3_PROX	SS3_PROX:INTRON	ATAD1	ENSG00000138138.14	ENST00000680024.1:ENST00000308448.11:ENST00000681308.1:ENST00000328142.3:ENST00000681602.1:ENST00000680388.1:ENST00000681629.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	57	2	3.10863	4.27891	5.44919	0.00470896	9.66659e-4	0.0631419	0.0282401
chr1	174881596	174881695	264371	0	+	0.434343	(0.408,0.44]	chr1	30911	36	INTRON	INTRON	RABGAP1L	ENSG00000152061.24	ENST00000251507.8:ENST00000681986.1:ENST00000529145.6:ENST00000325589.9:ENST00000469553.6:ENST00000367687.5:ENST00000347255.6:ENST00000489615.5:ENST00000478442.5:ENST00000465412.5:ENST00000486220.5:ENST00000392064.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	26	2	4.12187	4.278835000000001	4.4358	0.0354689	0.00893097	0.137535	0.0849778
chr12	122080365	122080465	5239878	0	+	0.42	(0.408,0.44]	chr12	497496	7	INTRON	INTRON	MLXIP	ENSG00000175727.14	ENST00000319080.12	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.12187	4.278835000000001	4.4358	0.0354689	0.00893097	0.137535	0.0849778
chr18	12330779	12330879	6946658	0	-	0.42	(0.408,0.44]	chr18	687178	6	INTRON	INTRON	AFG3L2	ENSG00000141385.12	ENST00000269143.8:ENST00000691970.1:ENST00000691179.1:ENST00000687337.1:ENST00000692988.1:ENST00000692497.1:ENST00000688199.1:ENST00000687477.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	26	2	4.12187	4.278835000000001	4.4358	0.0354689	0.00893097	0.137535	0.0849778
chr20	62016906	62017006	7360428	0	-	0.43	(0.408,0.44]	chr20	750714	18	INTRON	INTRON	TAF4	ENSG00000130699.20	ENST00000252996.9:ENST00000608887.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	26	2	4.12187	4.278835000000001	4.4358	0.0354689	0.00893097	0.137535	0.0849778
chr21	32277881	32277981	7437936	0	-	0.41	(0.408,0.44]	chr21	758716	26	INTRON	INTRON	MIS18A	ENSG00000159055.4	ENST00000290130.4	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.12187	4.278835000000001	4.4358	0.0354689	0.00893097	0.137535	0.0849778
chr22	47125901	47126001	7538837	0	+	0.43	(0.408,0.44]	chr22	770640	139	INTRON	INTRON	TBC1D22A	ENSG00000054611.14	ENST00000380995.5:ENST00000337137.9:ENST00000407381.7:ENST00000355704.7:ENST00000394449.6:ENST00000441162.5:ENST00000406733.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	26	2	4.12187	4.278835000000001	4.4358	0.0354689	0.00893097	0.137535	0.0849778
chr4	139044822	139044914	2049678	0	+	0.413043	(0.408,0.44]	chr4	203276	3	CDS	CDS:EXON_MRNA:INTRON	NOCT	ENSG00000151014.6	ENST00000280614.4:ENST00000630479.1:ENST00000515616.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	26	2	4.12187	4.278835000000001	4.4358	0.0354689	0.00893097	0.137535	0.0849778
chr5	31508420	31508520	2596766	0	-	0.41	(0.408,0.44]	chr5	246669	4	SS5_PROX	SS5_PROX:INTRON	DROSHA	ENSG00000113360.17	ENST00000344624.8:ENST00000511367.6:ENST00000513349.5:ENST00000512076.1	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.12187	4.278835000000001	4.4358	0.0354689	0.00893097	0.137535	0.0849778
chr5	139186150	139186250	2735338	0	-	0.41	(0.408,0.44]	chr5	257600	308	INTRON	INTRON	SIL1	ENSG00000120725.13	ENST00000394817.7:ENST00000265195.9:ENST00000509534.5:ENST00000508639.5:ENST00000507002.5:ENST00000505830.5:ENST00000504666.5:ENST00000509400.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	26	2	4.12187	4.278835000000001	4.4358	0.0354689	0.00893097	0.137535	0.0849778
chr6	156834718	156834818	3007730	0	+	0.42	(0.408,0.44]	chr6	281100	49	INTRON	INTRON	ARID1B	ENSG00000049618.24	ENST00000346085.10:ENST00000636930.2:ENST00000647938.1:ENST00000350026.10:ENST00000674298.1:ENST00000674190.1:ENST00000636748.1:ENST00000494260.2:ENST00000636607.1:ENST00000414678.7:ENST00000638000.1:ENST00000636205.1:ENST00000637532.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	26	2	4.12187	4.278835000000001	4.4358	0.0354689	0.00893097	0.137535	0.0849778
chr7	5405752	5405852	3471902	0	-	0.41	(0.408,0.44]	chr7	324674	108	INTRON	INTRON	TNRC18	ENSG00000182095.15	ENST00000399537.8:ENST00000430969.6:ENST00000434361.5:ENST00000399434.2	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.12187	4.278835000000001	4.4358	0.0354689	0.00893097	0.137535	0.0849778
chr7	140029484	140029583	3658908	0	-	0.414141	(0.408,0.44]	chr7	339580	4	INTRON	INTRON	PARP12	ENSG00000059378.13	ENST00000263549.8:ENST00000473341.5:ENST00000488726.5:ENST00000489809.5:ENST00000491598.5:ENST00000466597.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	26	2	4.12187	4.278835000000001	4.4358	0.0354689	0.00893097	0.137535	0.0849778
chr8	9018806	9018906	3695722	0	+	0.41	(0.408,0.44]	chr8	342930	4	SS5_PROX	SS5_PROX:INTRON	ERI1	ENSG00000104626.15	ENST00000519292.5:ENST00000250263.8:ENST00000520332.5:ENST00000518663.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	26	2	4.12187	4.278835000000001	4.4358	0.0354689	0.00893097	0.137535	0.0849778
chr8	25469202	25469298	3715675	0	+	0.416667	(0.408,0.44]	chr8	345276	4	INTRON	INTRON	CDCA2	ENSG00000184661.14	ENST00000380665.3:ENST00000330560.8:ENST00000523454.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	26	2	4.12187	4.278835000000001	4.4358	0.0354689	0.00893097	0.137535	0.0849778
chr9	38009613	38009713	4253739	0	-	0.42	(0.408,0.44]	chr9	391685	344	INTRON	INTRON	SHB	ENSG00000107338.10	ENST00000377707.4	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.12187	4.278835000000001	4.4358	0.0354689	0.00893097	0.137535	0.0849778
chr9	128867519	128867619	4359645	0	-	0.42	(0.408,0.44]	chr9	400775	71	INTRON	INTRON	KYAT1	ENSG00000171097.14	ENST00000462722.5:ENST00000302586.8:ENST00000320665.10:ENST00000436267.7:ENST00000451800.5:ENST00000474824.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	26	2	4.12187	4.278835000000001	4.4358	0.0354689	0.00893097	0.137535	0.0849778
chr6	35589560	35589657	3086518	0	-	0.536082	(0.515,0.57]	chr6	288751	21	INTRON	INTRON	FKBP5	ENSG00000096060.15	ENST00000536438.5:ENST00000539068.5:ENST00000357266.9:ENST00000542713.1	protein_coding	protein_coding	protein_coding	protein_coding	1	51	2	3.71942	4.27853	4.83764	0.00279527	2.61221e-4	0.0469265	0.014326
chr1	156129029	156129128	230566	0	+	0.484848	(0.476,0.515]	chr1	27175	17	INTRON	INTRON	LMNA	ENSG00000160789.24	ENST00000502751.5:ENST00000368301.6:ENST00000676385.2:ENST00000675939.1:ENST00000675667.1:ENST00000675989.1:ENST00000676283.1:ENST00000674720.1:ENST00000496738.6:ENST00000674518.1:ENST00000676208.1:ENST00000674600.1:ENST00000675874.1:ENST00000676434.1:ENST00000684195.1:ENST00000683032.1:ENST00000682650.1:ENST00000361308.9:ENST00000368300.9:ENST00000675881.1:ENST00000675455.1:ENST00000677389.1:ENST00000470199.2:ENST00000469565.6:ENST00000368299.7:ENST00000502357.5:ENST00000448611.6:ENST00000515459.5:ENST00000675431.1:ENST00000368297.5:ENST00000504687.6:ENST00000473598.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	54	2	3.35059	4.27852	5.20645	0.00171515	0.00136049	0.0381936	0.0336321
chr15	44341698	44341797	6013601	0	+	0.494949	(0.476,0.515]	chr15	572866	30	INTRON	INTRON	GOLM2	ENSG00000166734.20	ENST00000299957.11:ENST00000557945.5:ENST00000650436.1:ENST00000345795.6:ENST00000559037.1:ENST00000558847.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	54	2	3.35059	4.27852	5.20645	0.00171515	0.00136049	0.0381936	0.0336321
chr1	95196419	95196518	167364	0	+	0.414141	(0.408,0.44]	chr1	18143	47	UTR3	UTR3:EXON_MRNA:INTRON	TLCD4:TLCD4-RWDD3	ENSG00000152078.10:ENSG00000271092.5	ENST00000370203.9:ENST00000604534.5:ENST00000604203.1	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.22447	4.278425	4.33238	0.0218901	0.0161655	0.11491	0.109464
chr1	150395409	150395509	222009	0	+	0.41	(0.408,0.44]	chr1	25051	301	INTRON	INTRON	RPRD2	ENSG00000163125.16	ENST00000492220.1:ENST00000369068.5:ENST00000401000.8:ENST00000369067.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	26	2	4.22447	4.278425	4.33238	0.0218901	0.0161655	0.11491	0.109464
chr10	103405683	103405750	4516297	0	+	0.432836	(0.408,0.44]	chr10	416378	1	SS3_PROX	SS3_PROX:INTRON	PDCD11	ENSG00000148843.15	ENST00000369797.8:ENST00000649849.1	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.22447	4.278425	4.33238	0.0218901	0.0161655	0.11491	0.109464
chr14	21387568	21387668	5835563	0	-	0.42	(0.408,0.44]	chr14	554613	10	INTRON	INTRON	CHD8	ENSG00000100888.15	ENST00000430710.8:ENST00000646647.2:ENST00000645929.1:ENST00000645206.1:ENST00000557364.6:ENST00000643469.1:ENST00000553870.2:ENST00000555935.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	26	2	4.22447	4.278425	4.33238	0.0218901	0.0161655	0.11491	0.109464
chr16	46662982	46663072	6478194	0	-	0.422222	(0.408,0.44]	chr16	626635	1	CDS	CDS:UTR3:EXON_MRNA	VPS35	ENSG00000069329.18	ENST00000299138.12:ENST00000647959.1:ENST00000568784.6:ENST00000562420.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	26	2	4.22447	4.278425	4.33238	0.0218901	0.0161655	0.11491	0.109464
chr16	81588270	81588370	6406434	0	+	0.42	(0.408,0.44]	chr16	615031	924	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.22447	4.278425	4.33238	0.0218901	0.0161655	0.11491	0.109464
chr19	6246170	6246270	7128088	0	-	0.43	(0.408,0.44]	chr19	717607	151	INTRON	INTRON	MLLT1	ENSG00000130382.9	ENST00000252674.9	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.22447	4.278425	4.33238	0.0218901	0.0161655	0.11491	0.109464
chr2	238441068	238441167	1052709	0	+	0.414141	(0.408,0.44]	chr2	111993	47	INTRON	INTRON	ASB1	ENSG00000065802.12	ENST00000463352.5:ENST00000264607.9:ENST00000409297.1:ENST00000438264.5:ENST00000491653.1:ENST00000468122.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	26	2	4.22447	4.278425	4.33238	0.0218901	0.0161655	0.11491	0.109464
chr22	19813642	19813741	7555212	0	-	0.424242	(0.408,0.44]	chr22	772431	8	INTRON	INTRON	GNB1L	ENSG00000185838.14	ENST00000329517.11:ENST00000403325.5:ENST00000405009.5:ENST00000460402.5:ENST00000481086.1:ENST00000453108.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	26	2	4.22447	4.278425	4.33238	0.0218901	0.0161655	0.11491	0.109464
chr22	28827173	28827273	7494295	0	+	0.41	(0.408,0.44]	chr22	764622	46	INTRON	INTRON	ENSG00000226471	ENSG00000226471.7	ENST00000458080.1:ENST00000687270.1:ENST00000418292.1	lncRNA	lncRNA	lncRNA	lncRNA	0	26	2	4.22447	4.278425	4.33238	0.0218901	0.0161655	0.11491	0.109464
chr3	45602750	45602849	1416185	0	+	0.424242	(0.408,0.44]	chr3	148594	61	INTRON	INTRON	LIMD1	ENSG00000144791.10	ENST00000465039.5:ENST00000440097.5:ENST00000273317.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	26	2	4.22447	4.278425	4.33238	0.0218901	0.0161655	0.11491	0.109464
chr6	137213550	137213650	3235815	0	-	0.44	(0.408,0.44]	chr6	300751	4	SS5_PROX	SS5_PROX:INTRON	IFNGR1	ENSG00000027697.16	ENST00000458076.6:ENST00000696695.1:ENST00000367739.9:ENST00000696694.1:ENST00000645045.1:ENST00000643119.1:ENST00000696693.1:ENST00000414770.6:ENST00000696696.1:ENST00000644894.1:ENST00000646898.1:ENST00000646036.1:ENST00000645753.1:ENST00000642390.1:ENST00000647124.1:ENST00000696697.1:ENST00000696698.1:ENST00000696699.1:ENST00000478333.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	26	2	4.22447	4.278425	4.33238	0.0218901	0.0161655	0.11491	0.109464
chr7	23443691	23443791	3503399	0	-	0.43	(0.408,0.44]	chr7	326910	125	INTRON	INTRON	IGF2BP3	ENSG00000136231.14	ENST00000258729.8:ENST00000421467.6:ENST00000468263.5:ENST00000491719.5:ENST00000476938.5:ENST00000468005.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	26	2	4.22447	4.278425	4.33238	0.0218901	0.0161655	0.11491	0.109464
chr7	27795519	27795615	3293916	0	+	0.427083	(0.408,0.44]	chr7	306010	7	INTRON	INTRON	TAX1BP1	ENSG00000106052.14	ENST00000543117.5:ENST00000433216.6:ENST00000265393.10:ENST00000409980.5:ENST00000416801.6:ENST00000396319.7:ENST00000457186.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	26	2	4.22447	4.278425	4.33238	0.0218901	0.0161655	0.11491	0.109464
chr7	92787122	92787222	3572766	0	-	0.43	(0.408,0.44]	chr7	332810	119	INTRON	INTRON	CDK6	ENSG00000105810.10	ENST00000424848.3:ENST00000265734.8	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.22447	4.278425	4.33238	0.0218901	0.0161655	0.11491	0.109464
chr8	120468730	120468829	3849158	0	+	0.414141	(0.408,0.44]	chr8	354554	46	INTRON	INTRON	MTBP	ENSG00000172167.8	ENST00000305949.6:ENST00000523373.5:ENST00000522449.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	26	2	4.22447	4.278425	4.33238	0.0218901	0.0161655	0.11491	0.109464
chr7	119620977	119621077	3627546	0	-	0.33	(0.32,0.35]	chr7	337315	1205	INTRON	INTRON	LINC02476	ENSG00000225546.6	ENST00000660268.1	lncRNA	lncRNA	lncRNA	lncRNA	1	60	2	2.96746	4.278345	5.58923	0.00815799	8.12357e-4	0.0810802	0.0263656
chr7	131370430	131370530	3416868	0	+	0.22	[0,0.28]	chr7	319187	421	INTRON	INTRON	MKLN1	ENSG00000128585.18	ENST00000421797.6:ENST00000416992.6:ENST00000429546.5:ENST00000446815.5:ENST00000494286.5:ENST00000352689.11:ENST00000494785.5:ENST00000458153.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	68	2	3.44611	4.27822	5.11033	0.00991388	0.00185186	0.0838372	0.039946
chr7	5682984	5683084	3473965	0	-	0.41	(0.408,0.44]	chr7	324821	301	INTRON	INTRON	RNF216	ENSG00000011275.19	ENST00000425013.6:ENST00000389902.8:ENST00000389900.8:ENST00000484458.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	58	2	3.05705	4.278195	5.49934	0.00658331	1.5076e-4	0.0701901	0.0106137
chr22	21838033	21838133	7561090	0	-	0.47	(0.44,0.476]	chr22	773388	298	INTRON	INTRON	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	3	95	2	2.14666	4.278124999999999	6.40959	0.0116436	8.98096e-7	0.0889659	5.37848e-4
chr10	35468535	35468634	4425828	0	+	0.313131	(0.28,0.32]	chr10	407918	127	INTRON	INTRON	CCNY	ENSG00000108100.18	ENST00000374706.5:ENST00000490012.6:ENST00000493157.6:ENST00000374704.8:ENST00000265375.13:ENST00000339497.7:ENST00000492478.5:ENST00000470025.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	28	2	4.03345	4.27789	4.52233	0.0704058	0.0129279	0.184298	0.0990564
chr11	77738140	77738239	4995147	0	-	0.30303	(0.28,0.32]	chr11	472029	121	INTRON	INTRON	RSF1	ENSG00000048649.14	ENST00000308488.11:ENST00000528095.5:ENST00000534794.1:ENST00000440064.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	28	2	4.03345	4.27789	4.52233	0.0704058	0.0129279	0.184298	0.0990564
chr12	19185029	19185129	5088824	0	+	0.29	(0.28,0.32]	chr12	480740	522	INTRON	INTRON	PLEKHA5	ENSG00000052126.15	ENST00000429027.7:ENST00000540972.5:ENST00000299275.10:ENST00000539256.5:ENST00000538714.5:ENST00000535357.5:ENST00000538034.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	28	2	4.03345	4.27789	4.52233	0.0704058	0.0129279	0.184298	0.0990564
chr12	71653566	71653665	5363489	0	-	0.30303	(0.28,0.32]	chr12	512031	54	INTRON	INTRON	ZFC3H1	ENSG00000133858.17	ENST00000378743.9:ENST00000552994.5:ENST00000550712.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	28	2	4.03345	4.27789	4.52233	0.0704058	0.0129279	0.184298	0.0990564
chr13	19764686	19764786	5552762	0	-	0.32	(0.28,0.32]	chr13	530722	49	INTRON	INTRON	PSPC1	ENSG00000121390.19	ENST00000471658.5:ENST00000492741.5:ENST00000338910.9:ENST00000619300.4:ENST00000427943.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	28	2	4.03345	4.27789	4.52233	0.0704058	0.0129279	0.184298	0.0990564
chr14	37123083	37123183	5877518	0	-	0.3	(0.28,0.32]	chr14	558013	2477	INTRON	INTRON	SLC25A21	ENSG00000183032.12	ENST00000331299.6:ENST00000555449.5:ENST00000557611.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	28	2	4.03345	4.27789	4.52233	0.0704058	0.0129279	0.184298	0.0990564
chr18	36856089	36856188	6893105	0	+	0.30303	(0.28,0.32]	chr18	683214	114	INTRON	INTRON	KIAA1328	ENSG00000150477.15	ENST00000592611.5:ENST00000280020.10:ENST00000592521.5:ENST00000590617.5:ENST00000587139.5:ENST00000591619.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	28	2	4.03345	4.27789	4.52233	0.0704058	0.0129279	0.184298	0.0990564
chr2	15221460	15221560	1069717	0	-	0.32	(0.28,0.32]	chr2	114209	21	INTRON	INTRON	NBAS	ENSG00000151779.13	ENST00000417461.5:ENST00000281513.10:ENST00000442506.5	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.03345	4.27789	4.52233	0.0704058	0.0129279	0.184298	0.0990564
chr2	15393340	15393439	1071459	0	-	0.313131	(0.28,0.32]	chr2	114321	97	INTRON	INTRON	NBAS	ENSG00000151779.13	ENST00000281513.10:ENST00000442506.5:ENST00000441755.5	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.03345	4.27789	4.52233	0.0704058	0.0129279	0.184298	0.0990564
chr2	151449335	151449434	893619	0	+	0.30303	(0.28,0.32]	chr2	98976	24	INTRON	INTRON	RIF1	ENSG00000080345.18	ENST00000453091.6:ENST00000428287.6:ENST00000444746.7:ENST00000243326.9:ENST00000414861.6:ENST00000430328.6	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.03345	4.27789	4.52233	0.0704058	0.0129279	0.184298	0.0990564
chr20	44917935	44918029	7278012	0	+	0.287234	(0.28,0.32]	chr20	739929	7	INTRON	INTRON	PABPC1L	ENSG00000101104.13	ENST00000255136.8:ENST00000217073.7:ENST00000537323.5:ENST00000217074.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	28	2	4.03345	4.27789	4.52233	0.0704058	0.0129279	0.184298	0.0990564
chr3	158117802	158117902	1538351	0	+	0.32	(0.28,0.32]	chr3	160248	68	INTRON	INTRON	RSRC1	ENSG00000174891.14	ENST00000480820.5:ENST00000494002.5:ENST00000295930.7:ENST00000471994.5:ENST00000683733.1:ENST00000682221.1:ENST00000683831.1:ENST00000683516.1:ENST00000482822.3:ENST00000476899.6:ENST00000464171.5:ENST00000611884.5:ENST00000682164.1:ENST00000684604.1:ENST00000683899.1:ENST00000682500.1:ENST00000684683.1:ENST00000684512.1:ENST00000683394.1:ENST00000684156.1:ENST00000312179.10:ENST00000475278.6:ENST00000480119.5:ENST00000468344.5:ENST00000471911.5:ENST00000683137.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	28	2	4.03345	4.27789	4.52233	0.0704058	0.0129279	0.184298	0.0990564
chr4	6963712	6963811	1923160	0	+	0.292929	(0.28,0.32]	chr4	193067	90	INTRON	INTRON	TBC1D14	ENSG00000132405.19	ENST00000448507.5:ENST00000409757.9:ENST00000410031.5	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.03345	4.27789	4.52233	0.0704058	0.0129279	0.184298	0.0990564
chr4	139149588	139149688	2247071	0	-	0.31	(0.28,0.32]	chr4	219601	97	INTRON	INTRON	ELF2	ENSG00000109381.21	ENST00000394235.6:ENST00000686138.1:ENST00000511184.5:ENST00000511006.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	28	2	4.03345	4.27789	4.52233	0.0704058	0.0129279	0.184298	0.0990564
chr6	37978293	37978393	2858619	0	+	0.29	(0.28,0.32]	chr6	270231	479	INTRON	INTRON	ZFAND3	ENSG00000156639.12	ENST00000287218.9:ENST00000373391.6:ENST00000474522.5:ENST00000373389.5	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.03345	4.27789	4.52233	0.0704058	0.0129279	0.184298	0.0990564
chr6	167848785	167848884	3034556	0	+	0.292929	(0.28,0.32]	chr6	282711	205	INTRON	INTRON	AFDN	ENSG00000130396.21	ENST00000683244.1:ENST00000400825.8:ENST00000351017.9:ENST00000344191.8:ENST00000392112.5:ENST00000392108.7:ENST00000400824.8:ENST00000400822.7:ENST00000447894.6:ENST00000366809.6:ENST00000366806.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	28	2	4.03345	4.27789	4.52233	0.0704058	0.0129279	0.184298	0.0990564
chr7	35855080	35855179	3306445	0	+	0.313131	(0.28,0.32]	chr7	307002	67	INTRON	INTRON	SEPTIN7	ENSG00000122545.21	ENST00000399034.7:ENST00000435235.6:ENST00000350320.11:ENST00000672279.1:ENST00000634600.1:ENST00000635669.1:ENST00000635175.1:ENST00000475109.5:ENST00000635047.1:ENST00000473201.2:ENST00000399035.7:ENST00000425198.1:ENST00000634700.1:ENST00000635420.1:ENST00000634591.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	28	2	4.03345	4.27789	4.52233	0.0704058	0.0129279	0.184298	0.0990564
chr7	65898933	65899032	3323134	0	+	0.292929	(0.28,0.32]	chr7	309012	250	INTRON	INTRON	VKORC1L1	ENSG00000196715.7	ENST00000360768.5:ENST00000648187.1:ENST00000648179.1:ENST00000434382.2	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.03345	4.27789	4.52233	0.0704058	0.0129279	0.184298	0.0990564
chr7	105340161	105340261	3603418	0	-	0.3	(0.28,0.32]	chr7	336161	332	INTRON	INTRON	SRPK2	ENSG00000135250.17	ENST00000393651.8:ENST00000482897.5:ENST00000460391.5:ENST00000462282.5:ENST00000465112.5:ENST00000482862.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	28	2	4.03345	4.27789	4.52233	0.0704058	0.0129279	0.184298	0.0990564
chr7	107381647	107381747	3611200	0	-	0.31	(0.28,0.32]	chr7	336688	85	INTRON	INTRON	COG5	ENSG00000164597.15	ENST00000297135.9:ENST00000347053.8:ENST00000393603.7:ENST00000484237.5:ENST00000475638.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	28	2	4.03345	4.27789	4.52233	0.0704058	0.0129279	0.184298	0.0990564
chr7	112477790	112477888	3382074	0	+	0.295918	(0.28,0.32]	chr7	316834	7	INTRON	INTRON	IFRD1	ENSG00000006652.15	ENST00000462155.2	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.03345	4.27789	4.52233	0.0704058	0.0129279	0.184298	0.0990564
chr7	133725310	133725409	3422904	0	+	0.292929	(0.28,0.32]	chr7	319395	948	INTRON	INTRON	EXOC4	ENSG00000131558.15	ENST00000253861.5:ENST00000479839.6:ENST00000483800.5:ENST00000469115.5:ENST00000489931.5:ENST00000482089.5:ENST00000460346.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	28	2	4.03345	4.27789	4.52233	0.0704058	0.0129279	0.184298	0.0990564
chr8	90424191	90424290	3794340	0	+	0.313131	(0.28,0.32]	chr8	351800	150	INTRON	INTRON	LINC00534	ENSG00000253394.7	ENST00000655523.1:ENST00000658299.1:ENST00000663329.1:ENST00000658342.1:ENST00000655219.1:ENST00000662692.1:ENST00000667296.1:ENST00000667565.1:ENST00000653734.1:ENST00000654785.1:ENST00000524361.5:ENST00000668745.1:ENST00000661519.1:ENST00000671657.1:ENST00000655123.1:ENST00000670903.1:ENST00000654946.1	lncRNA	lncRNA	lncRNA	lncRNA	0	28	2	4.03345	4.27789	4.52233	0.0704058	0.0129279	0.184298	0.0990564
chr8	143459716	143459816	4082221	0	-	0.31	(0.28,0.32]	chr8	370865	182	INTRON	INTRON	ZC3H3	ENSG00000014164.7	ENST00000262577.6	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.03345	4.27789	4.52233	0.0704058	0.0129279	0.184298	0.0990564
chrX	119874471	119874567	7713624	0	+	0.302083	(0.28,0.32]	chrX	789274	7	INTRON	INTRON	NDUFA1	ENSG00000125356.7	ENST00000371437.5	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.03345	4.27789	4.52233	0.0704058	0.0129279	0.184298	0.0990564
chr11	126208318	126208415	5049929	0	-	0.360825	(0.35,0.378]	chr11	476473	14	INTRON	INTRON	RPUSD4	ENSG00000165526.9	ENST00000298317.9:ENST00000533628.5:ENST00000526942.5:ENST00000532674.2:ENST00000534393.5:ENST00000530036.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	27	2	3.97032	4.277845	4.58537	0.0578667	0.00703328	0.167723	0.0754576
chr13	27144692	27144792	5566295	0	-	0.36	(0.35,0.378]	chr13	532032	277	INTRON	INTRON	USP12	ENSG00000152484.14	ENST00000282344.11	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	3.97032	4.277845	4.58537	0.0578667	0.00703328	0.167723	0.0754576
chr4	159267987	159268071	2075161	0	+	0.369048	(0.35,0.378]	chr4	205226	4	UTR5	UTR5:EXON_MRNA:INTRON	RAPGEF2	ENSG00000109756.10	ENST00000644474.1:ENST00000691494.1:ENST00000505478.5:ENST00000504604.5:ENST00000644902.1:ENST00000511336.5:ENST00000510510.5:ENST00000264431.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	27	2	3.97032	4.277845	4.58537	0.0578667	0.00703328	0.167723	0.0754576
chr9	4837361	4837459	4095318	0	+	0.357143	(0.35,0.378]	chr9	373186	2	INTRON	INTRON	RCL1	ENSG00000120158.12	ENST00000381750.9:ENST00000442869.5:ENST00000473230.1:ENST00000381730.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	27	2	3.97032	4.277845	4.58537	0.0578667	0.00703328	0.167723	0.0754576
chr7	105357755	105357855	3603594	0	-	0.3	(0.28,0.32]	chr7	336161	508	INTRON	INTRON	SRPK2	ENSG00000135250.17	ENST00000393651.8:ENST00000482897.5:ENST00000460391.5:ENST00000462282.5:ENST00000465112.5:ENST00000482862.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	62	2	3.07744	4.277615	5.47779	0.00604536	0.00187048	0.0700813	0.0390476
chr4	73182926	73183026	2160067	0	-	0.34	(0.32,0.35]	chr4	212794	50	INTRON	INTRON	ANKRD17	ENSG00000132466.20	ENST00000358602.9:ENST00000558247.5:ENST00000330838.10:ENST00000509867.6:ENST00000561029.1:ENST00000559367.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	80	2	3.08864	4.2775300000000005	5.46642	0.00127669	6.64579e-4	0.0326395	0.0233423
chr17	59760881	59760980	6642931	0	+	0.50505	(0.476,0.515]	chr17	648739	216	INTRON	INTRON	VMP1	ENSG00000062716.13	ENST00000593168.5:ENST00000586245.5:ENST00000585847.5:ENST00000262291.9:ENST00000587945.1:ENST00000589823.6:ENST00000592619.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	55	2	3.58243	4.27748	4.97253	0.00311573	6.18479e-4	0.0498063	0.0223951
chr1	12372560	12372659	29717	0	+	0.30303	(0.28,0.32]	chr1	3681	25	INTRON	INTRON	VPS13D	ENSG00000048707.15	ENST00000620676.6:ENST00000613099.4:ENST00000011700.10:ENST00000646917.1:ENST00000460333.5:ENST00000646411.1:ENST00000543710.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	28	2	4.12807	4.277185	4.4263	0.0338135	0.0330296	0.146709	0.133816
chr1	40062971	40063066	79850	0	+	0.305263	(0.28,0.32]	chr1	10356	8	INTRON	INTRON	CAP1	ENSG00000131236.18	ENST00000372797.7:ENST00000372802.5:ENST00000449311.5:ENST00000421589.5:ENST00000414893.5:ENST00000372792.7:ENST00000372805.8:ENST00000414281.5:ENST00000420216.5:ENST00000372798.5:ENST00000340450.7:ENST00000435719.5:ENST00000427843.5:ENST00000424977.1:ENST00000417287.5	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.12807	4.277185	4.4263	0.0338135	0.0330296	0.146709	0.133816
chr1	175954126	175954225	589161	0	-	0.30303	(0.28,0.32]	chr1	70870	65	INTRON	INTRON	COP1	ENSG00000143207.21	ENST00000367669.8:ENST00000367667.5:ENST00000461830.6:ENST00000367666.5:ENST00000649803.1:ENST00000308769.12	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	28	2	4.12807	4.277185	4.4263	0.0338135	0.0330296	0.146709	0.133816
chr10	59898232	59898332	4623797	0	-	0.3	(0.28,0.32]	chr10	425682	452	INTRON	INTRON	CCDC6	ENSG00000108091.11	ENST00000263102.7	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.12807	4.277185	4.4263	0.0338135	0.0330296	0.146709	0.133816
chr10	72192831	72192930	4643826	0	-	0.292929	(0.28,0.32]	chr10	427242	105	INTRON	INTRON	ASCC1	ENSG00000138303.18	ENST00000672957.1:ENST00000394919.5:ENST00000317168.11:ENST00000342444.8:ENST00000486689.6:ENST00000673599.1:ENST00000672774.1:ENST00000671788.1:ENST00000672121.1:ENST00000672940.1:ENST00000317126.8:ENST00000394915.7:ENST00000525286.6:ENST00000531048.5:ENST00000461369.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	28	2	4.12807	4.277185	4.4263	0.0338135	0.0330296	0.146709	0.133816
chr11	108056251	108056351	4856209	0	+	0.29	(0.28,0.32]	chr11	452903	9	INTRON	INTRON	CUL5	ENSG00000166266.14	ENST00000393094.7:ENST00000531427.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	28	2	4.12807	4.277185	4.4263	0.0338135	0.0330296	0.146709	0.133816
chr15	40746836	40746934	6151276	0	-	0.285714	(0.28,0.32]	chr15	585127	12	INTRON	INTRON	RMDN3	ENSG00000137824.16	ENST00000260385.10:ENST00000338376.8:ENST00000558777.5:ENST00000558560.1:ENST00000560460.5:ENST00000558364.1:ENST00000560905.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	28	2	4.12807	4.277185	4.4263	0.0338135	0.0330296	0.146709	0.133816
chr19	28695487	28695586	7168052	0	-	0.30303	(0.28,0.32]	chr19	724207	73	INTRON	INTRON	ENSG00000283403:ENSG00000283269	ENSG00000283403.1:ENSG00000283269.1	ENST00000592347.5:ENST00000636857.1	lncRNA	lncRNA	lncRNA:transcribed_unprocessed_pseudogene	lncRNA:transcribed_unprocessed_pseudogene	0	28	2	4.12807	4.277185	4.4263	0.0338135	0.0330296	0.146709	0.133816
chr19	39451057	39451157	7067914	0	+	0.32	(0.28,0.32]	chr19	705814	47	INTRON	INTRON	SUPT5H	ENSG00000196235.14	ENST00000594990.5:ENST00000599117.5:ENST00000402194.6:ENST00000601515.5:ENST00000432763.7:ENST00000595368.5:ENST00000594729.5:ENST00000601978.1:ENST00000359191.10:ENST00000598725.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	28	2	4.12807	4.277185	4.4263	0.0338135	0.0330296	0.146709	0.133816
chr22	17823560	17823659	7548622	0	-	0.30303	(0.28,0.32]	chr22	771578	1	INTRON	INTRON	MICAL3	ENSG00000243156.9	ENST00000441493.7:ENST00000672019.1:ENST00000498573.5:ENST00000578984.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	28	2	4.12807	4.277185	4.4263	0.0338135	0.0330296	0.146709	0.133816
chr3	57626931	57627030	1706316	0	-	0.282828	(0.28,0.32]	chr3	175961	16	UTR3	UTR3:EXON_MRNA	DENND6A	ENSG00000174839.13	ENST00000311128.10	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.12807	4.277185	4.4263	0.0338135	0.0330296	0.146709	0.133816
chr4	110159979	110160079	2227348	0	-	0.31	(0.28,0.32]	chr4	218024	540	INTRON	INTRON	ELOVL6	ENSG00000170522.10	ENST00000394607.7:ENST00000302274.8:ENST00000514184.5:ENST00000506625.5:ENST00000506461.1:ENST00000503885.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	28	2	4.12807	4.277185	4.4263	0.0338135	0.0330296	0.146709	0.133816
chr6	97201057	97201157	3163937	0	-	0.29	(0.28,0.32]	chr6	295089	140	INTRON	INTRON	MMS22L	ENSG00000146263.12	ENST00000683635.1:ENST00000275053.8:ENST00000369251.6	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.12807	4.277185	4.4263	0.0338135	0.0330296	0.146709	0.133816
chr7	139761806	139761906	3658674	0	-	0.29	(0.28,0.32]	chr7	339545	444	INTRON	INTRON	HIPK2	ENSG00000064393.16	ENST00000406875.8:ENST00000428878.6	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.12807	4.277185	4.4263	0.0338135	0.0330296	0.146709	0.133816
chr8	124369554	124369654	4043486	0	-	0.32	(0.28,0.32]	chr8	368840	384	INTRON	INTRON	TMEM65	ENSG00000164983.8	ENST00000297632.8	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.12807	4.277185	4.4263	0.0338135	0.0330296	0.146709	0.133816
chr9	114620668	114620767	4189940	0	+	0.313131	(0.28,0.32]	chr9	382085	30	INTRON	INTRON	TMEM268	ENSG00000157693.15	ENST00000374049.4:ENST00000288502.9:ENST00000471206.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	28	2	4.12807	4.277185	4.4263	0.0338135	0.0330296	0.146709	0.133816
chr2	32457134	32457233	731803	0	+	0.282828	(0.28,0.32]	chr2	84399	28	INTRON	INTRON	BIRC6	ENSG00000115760.15	ENST00000421745.7:ENST00000648282.1	protein_coding	protein_coding	protein_coding	protein_coding	2	83	2	2.84671	4.27705	5.70739	0.00216662	8.32651e-4	0.0434015	0.0266389
chr15	57140881	57140980	6034343	0	+	0.363636	(0.35,0.378]	chr15	574707	60	INTRON	INTRON	TCF12	ENSG00000140262.18	ENST00000438423.6:ENST00000267811.9:ENST00000333725.10:ENST00000560190.5:ENST00000559609.5:ENST00000557843.5:ENST00000557947.5:ENST00000561152.1:ENST00000561346.5:ENST00000559216.5:ENST00000560887.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	27	2	4.07186	4.27685	4.48184	0.0279478	0.0191702	0.137011	0.108861
chr20	38449112	38449208	7269863	0	+	0.364583	(0.35,0.378]	chr20	738745	5	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	SNHG11	ENSG00000174365.21	ENST00000659148.1:ENST00000453698.6:ENST00000483342.7:ENST00000656815.1:ENST00000421599.6:ENST00000657911.1:ENST00000400436.7:ENST00000434729.7:ENST00000693500.1:ENST00000432153.6:ENST00000440918.6:ENST00000656427.1:ENST00000669083.1:ENST00000670898.2:ENST00000669338.2:ENST00000692199.1:ENST00000689738.1:ENST00000661078.1:ENST00000661733.1:ENST00000692643.1:ENST00000667760.2:ENST00000666350.1:ENST00000656824.1:ENST00000666020.1:ENST00000688319.1:ENST00000670145.1:ENST00000689733.1:ENST00000661378.1:ENST00000663763.1:ENST00000669976.1:ENST00000449351.5:ENST00000359074.9:ENST00000660281.2:ENST00000420006.5:ENST00000659610.1:ENST00000437028.5:ENST00000660884.1:ENST00000418383.2:ENST00000658222.1:ENST00000669207.1:ENST00000457218.5:ENST00000666813.2:ENST00000442419.2:ENST00000691928.1:ENST00000656502.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	0	27	2	4.07186	4.27685	4.48184	0.0279478	0.0191702	0.137011	0.108861
chr4	39299920	39300020	2128574	0	-	0.36	(0.35,0.378]	chr4	209764	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	RFC1	ENSG00000035928.17	ENST00000381897.5:ENST00000349703.7	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.07186	4.27685	4.48184	0.0279478	0.0191702	0.137011	0.108861
chrX	136912939	136913038	7727495	0	+	0.363636	(0.35,0.378]	chrX	790754	28	INTRON	INTRON	TM9SF5P	ENSG00000234062.9	ENST00000650669.2:ENST00000687469.1:ENST00000431464.6:ENST00000685550.1:ENST00000685929.1:ENST00000424306.5:ENST00000687978.1:ENST00000688713.1:ENST00000693626.1:ENST00000686432.1:ENST00000693698.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	27	2	4.07186	4.27685	4.48184	0.0279478	0.0191702	0.137011	0.108861
chr2	26065272	26065372	713411	0	+	0.3	(0.28,0.32]	chr2	82440	226	INTRON	INTRON	RAB10	ENSG00000084733.11	ENST00000264710.5:ENST00000495146.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	63	2	2.91832	4.27658	5.63484	0.0102484	0.00108324	0.089002	0.0303015
chr16	29679909	29680009	6335388	0	+	0.36	(0.35,0.378]	chr16	606813	3	INTRON	INTRON	QPRT	ENSG00000103485.19	ENST00000449759.2:ENST00000219771.7:ENST00000395384.9:ENST00000562473.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	77	2	2.59046	4.27656	5.96266	0.00528327	1.153e-4	0.0656295	0.00968369
chr7	129048481	129048581	3636517	0	-	0.45	(0.44,0.476]	chr7	338148	64	INTRON	INTRON	TNPO3	ENSG00000064419.14	ENST00000627585.2:ENST00000265388.10:ENST00000471234.5:ENST00000482320.5:ENST00000471166.1	protein_coding	protein_coding	protein_coding	protein_coding	1	58	2	2.9195	4.27644	5.63338	0.0102021	7.86121e-5	0.0850389	0.00738014
chr13	95213075	95213175	5638988	0	-	0.43	(0.408,0.44]	chr13	537151	19	INTRON	INTRON	ABCC4	ENSG00000125257.16	ENST00000645237.2:ENST00000643051.1:ENST00000643842.1:ENST00000646439.1:ENST00000643816.1:ENST00000536256.3:ENST00000643556.1:ENST00000629385.1:ENST00000642524.1:ENST00000645532.1:ENST00000644471.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	72	2	2.9826	4.276165	5.56973	9.23082e-4	3.81714e-4	0.0278392	0.0181283
chr13	32592189	32592289	5465365	0	+	0.46	(0.44,0.476]	chr13	523717	52	INTRON	INTRON	PDS5B	ENSG00000083642.19	ENST00000315596.15:ENST00000482955.5:ENST00000498550.5:ENST00000450460.5:ENST00000493653.1:ENST00000466078.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	72	2	3.01782	4.276105	5.53439	7.8136e-4	4.05863e-4	0.0257169	0.0185763
chr22	45337968	45338068	7530436	0	+	0.38	(0.378,0.408]	chr22	769999	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	FAM118A	ENSG00000100376.12	ENST00000216214.7:ENST00000441876.7:ENST00000483102.5:ENST00000462361.1:ENST00000479180.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	80	2	2.76893	4.2760549999999995	5.78318	0.00316735	4.21479e-5	0.0503085	0.0052571
chr21	10431472	10431572	7368309	0	+	0.48	(0.476,0.515]	chr21	751975	162	INTRON	INTRON	BAGE2	ENSG00000187172.15	ENST00000474011.5:ENST00000470054.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	4	99	2	2.31113	4.275815	6.2405	0.00258657	1.22785e-5	0.0469354	0.00278588
chr18	9119025	9119125	6868759	0	+	0.3	(0.28,0.32]	chr18	680517	3	SS3_PROX	SS3_PROX:INTRON	NDUFV2	ENSG00000178127.13	ENST00000318388.11:ENST00000400033.1:ENST00000474350.5:ENST00000483511.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	148	2	2.58562	4.27572	5.96582	3.08567e-4	2.85522e-4	0.0161584	0.0150568
chr3	195319011	195319110	1894662	0	-	0.59596	(0.57,1]	chr3	189624	57	INTRON	INTRON	ACAP2	ENSG00000114331.16	ENST00000326793.11:ENST00000635383.1:ENST00000439758.3	protein_coding	protein_coding	protein_coding	protein_coding	1	37	2	3.42323	4.2756799999999995	5.12813	8.58388e-4	8.62401e-5	0.0267428	0.00783027
chr6	57397904	57398004	2879910	0	+	0.39	(0.378,0.408]	chr6	273403	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	PRIM2	ENSG00000146143.19	ENST00000672107.1:ENST00000615550.5:ENST00000490313.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	61	2	2.63247	4.27566	5.91885	0.0215745	1.02858e-4	0.123836	0.00915589
chr7	87846748	87846848	3566072	0	-	0.3	(0.28,0.32]	chr7	332293	4	SS5_PROX	SS5_PROX:INTRON	SLC25A40	ENSG00000075303.13	ENST00000341119.10:ENST00000429674.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	84	2	3.03222	4.27545	5.51868	0.00162747	9.72587e-4	0.0367966	0.0287313
chr1	247007405	247007505	682594	0	-	0.57	(0.515,0.57]	chr1	80098	1	SS5_PROX	SS5_PROX:INTRON	ZNF670-ZNF695:ZNF695	ENSG00000135747.11:ENSG00000197472.15	ENST00000465049.6:ENST00000479214.5:ENST00000366504.6:ENST00000491337.6:ENST00000487338.6:ENST00000498046.2:ENST00000474541.1:ENST00000339986.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	25	2	4.04086	4.27543	4.51	0.0197045	0.00809449	0.120063	0.0766625
chr10	42636619	42636719	4604490	0	-	0.57	(0.515,0.57]	chr10	424154	3	SS5_PROX	SS5_PROX:INTRON	ZNF33B	ENSG00000196693.15	ENST00000486187.5:ENST00000359467.8:ENST00000476796.2:ENST00000493285.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	25	2	4.04086	4.27543	4.51	0.0197045	0.00809449	0.120063	0.0766625
chr14	49585110	49585203	5885762	0	-	0.548387	(0.515,0.57]	chr14	558477	11	INTRON	INTRON	RPS29	ENSG00000213741.11	ENST00000396020.7:ENST00000556230.2:ENST00000245458.11:ENST00000557111.5:ENST00000557367.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	25	2	4.04086	4.27543	4.51	0.0197045	0.00809449	0.120063	0.0766625
chr15	63207644	63207744	6040933	0	+	0.54	(0.515,0.57]	chr15	575230	175	INTRON	INTRON	RAB8B	ENSG00000166128.13	ENST00000558990.5:ENST00000558119.5:ENST00000559927.1:ENST00000321437.9:ENST00000559006.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	25	2	4.04086	4.27543	4.51	0.0197045	0.00809449	0.120063	0.0766625
chr16	336957	337057	6426699	0	-	0.53	(0.515,0.57]	chr16	617500	219	INTRON	INTRON	AXIN1	ENSG00000103126.15	ENST00000262320.8:ENST00000461023.5:ENST00000354866.7:ENST00000481769.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	25	2	4.04086	4.27543	4.51	0.0197045	0.00809449	0.120063	0.0766625
chr19	9152139	9152239	7011356	0	+	0.54	(0.515,0.57]	chr19	696234	112	INTRON	INTRON	ZNF317	ENSG00000130803.15	ENST00000247956.11:ENST00000360385.7:ENST00000591278.5:ENST00000419608.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	25	2	4.04086	4.27543	4.51	0.0197045	0.00809449	0.120063	0.0766625
chr22	35199716	35199816	7580756	0	-	0.54	(0.515,0.57]	chr22	775774	43	INTRON	INTRON	LINC01399	ENSG00000233080.3	ENST00000423311.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	0	25	2	4.04086	4.27543	4.51	0.0197045	0.00809449	0.120063	0.0766625
chr3	141882656	141882756	1526135	0	+	0.55	(0.515,0.57]	chr3	159005	47	INTRON	INTRON	ATP1B3	ENSG00000069849.11	ENST00000475483.5:ENST00000465172.5:ENST00000286371.8:ENST00000466678.5:ENST00000462082.1:ENST00000495216.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	25	2	4.04086	4.27543	4.51	0.0197045	0.00809449	0.120063	0.0766625
chr6	88756386	88756486	3157055	0	-	0.54	(0.515,0.57]	chr6	294184	421	INTRON	INTRON	RNGTT	ENSG00000111880.16	ENST00000369485.9:ENST00000369475.7:ENST00000627296.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	25	2	4.04086	4.27543	4.51	0.0197045	0.00809449	0.120063	0.0766625
chr7	158694383	158694480	3688694	0	-	0.556701	(0.515,0.57]	chr7	342273	5	INTRON	INTRON	NCAPG2	ENSG00000146918.20	ENST00000356309.8:ENST00000432615.5:ENST00000409423.5:ENST00000409339.3:ENST00000621338.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	25	2	4.04086	4.27543	4.51	0.0197045	0.00809449	0.120063	0.0766625
chr5	28840239	28840339	2330152	0	+	0.26	[0,0.28]	chr5	225135	297	INTRON	INTRON	LINC02109	ENSG00000259786.7	ENST00000658190.1	lncRNA	lncRNA	lncRNA	lncRNA	3	109	2	2.28786	4.275285	6.26271	0.00782185	2.29235e-4	0.0788675	0.0138892
chr18	9731237	9731337	6872006	0	+	0.42	(0.408,0.44]	chr18	680793	47	INTRON	INTRON	RAB31	ENSG00000168461.13	ENST00000578734.5:ENST00000578921.6:ENST00000581109.1:ENST00000583137.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	54	2	3.20437	4.274925	5.34548	0.00306596	9.40657e-4	0.0509893	0.0280776
chr2	86967844	86967942	824681	0	+	0.418367	(0.408,0.44]	chr2	92143	43	INTRON	INTRON	RGPD1	ENSG00000187627.17	ENST00000409776.6:ENST00000398193.8:ENST00000641458.2	protein_coding	protein_coding	protein_coding	protein_coding	1	57	2	3.79534	4.27466	4.75398	0.00703931	2.17043e-4	0.0718189	0.0129235
chr1	19405457	19405556	388104	0	-	0.333333	(0.32,0.35]	chr1	46371	195	INTRON	INTRON	CAPZB	ENSG00000077549.19	ENST00000264202.8:ENST00000264203.7:ENST00000375142.5:ENST00000482808.2:ENST00000674449.1:ENST00000674390.1:ENST00000375144.6:ENST00000674432.1:ENST00000433834.5:ENST00000674228.1:ENST00000459967.6:ENST00000489607.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	64	2	3.16237	4.274605	5.38684	0.00550276	5.01164e-4	0.0648867	0.020217099999999998
chr3	5217593	5217691	1354501	0	+	0.244898	[0,0.28]	chr3	142483	18	UTR3	UTR3:EXON_MRNA	EDEM1	ENSG00000134109.11	ENST00000256497.9	protein_coding	protein_coding	protein_coding	protein_coding	1	67	2	3.33854	4.27454	5.21054	0.00758653	0.00278022	0.0749063	0.0488412
chr11	43405113	43405213	4777022	0	+	0.4	(0.378,0.408]	chr11	441746	2	SS3_PROX	SS3_PROX:INTRON	TTC17	ENSG00000052841.15	ENST00000039989.9:ENST00000299240.10:ENST00000526774.5:ENST00000530483.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	27	2	3.96471	4.27449	4.58427	0.032421	0.0128325	0.145026	0.0926667
chr11	48063810	48063910	4790053	0	+	0.38	(0.378,0.408]	chr11	443275	171	INTRON	INTRON	PTPRJ	ENSG00000149177.14	ENST00000418331.7:ENST00000440289.6:ENST00000527952.1:ENST00000534219.5:ENST00000526550.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	27	2	3.96471	4.27449	4.58427	0.032421	0.0128325	0.145026	0.0926667
chr12	51144340	51144440	5325587	0	-	0.38	(0.378,0.408]	chr12	507890	188	INTRON	INTRON	TFCP2	ENSG00000135457.11	ENST00000257915.10:ENST00000685804.1:ENST00000549867.5:ENST00000548115.5:ENST00000548108.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	27	2	3.96471	4.27449	4.58427	0.032421	0.0128325	0.145026	0.0926667
chr2	207575754	207575854	991677	0	+	0.39	(0.378,0.408]	chr2	106556	3	SS5_PROX	SS5_PROX:INTRON	CREB1	ENSG00000118260.15	ENST00000430624.5:ENST00000432329.6:ENST00000421139.5:ENST00000353267.8:ENST00000448277.5:ENST00000418081.5:ENST00000455757.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	27	2	3.96471	4.27449	4.58427	0.032421	0.0128325	0.145026	0.0926667
chr20	3003656	3003755	7223874	0	+	0.40404	(0.378,0.408]	chr20	733996	148	INTRON	INTRON	PTPRA	ENSG00000132670.21	ENST00000455631.5:ENST00000399903.7:ENST00000216877.10:ENST00000318266.9:ENST00000356147.3	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	3.96471	4.27449	4.58427	0.032421	0.0128325	0.145026	0.0926667
chr3	37285023	37285121	1396175	0	+	0.408163	(0.378,0.408]	chr3	146339	24	INTRON	INTRON	GOLGA4	ENSG00000144674.17	ENST00000435830.6:ENST00000444882.5:ENST00000356847.8:ENST00000450863.6:ENST00000361924.7:ENST00000429018.5:ENST00000419177.3:ENST00000437131.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	27	2	3.96471	4.27449	4.58427	0.032421	0.0128325	0.145026	0.0926667
chr6	43544176	43544275	3096996	0	-	0.383838	(0.378,0.408]	chr6	290015	98	INTRON	INTRON	XPO5	ENSG00000124571.18	ENST00000265351.12:ENST00000398835.7:ENST00000612911.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	27	2	3.96471	4.27449	4.58427	0.032421	0.0128325	0.145026	0.0926667
chr7	152215040	152215140	3679048	0	-	0.28	[0,0.28]	chr7	341526	62	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000683200.1:ENST00000682283.1:ENST00000473186.5:ENST00000679882.1:ENST00000680969.1:ENST00000681033.1:ENST00000682176.1:ENST00000679645.1:ENST00000684550.1:ENST00000489110.2:ENST00000681838.1:ENST00000683490.1:ENST00000684623.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	69	2	3.54621	4.27442	5.00263	0.013055	0.00124865	0.093385	0.0328543
chr8	47785916	47786016	3943927	0	-	0.49	(0.476,0.515]	chr8	361559	2	INTRON	INTRON	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7	protein_coding	protein_coding	protein_coding	protein_coding	1	57	2	2.80729	4.27442	5.74155	0.0126008	1.47804e-4	0.0980703	0.0111067
chr7	151093539	151093639	3448422	0	+	0.54	(0.515,0.57]	chr7	322165	26	INTRON	INTRON	AGAP3	ENSG00000133612.19	ENST00000490097.5:ENST00000463381.5:ENST00000397238.7:ENST00000622464.4:ENST00000479901.5:ENST00000473312.5:ENST00000469901.5:ENST00000476375.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	52	2	3.03037	4.27434	5.51831	0.00608732	6.99834e-5	0.0676501	0.00692586
chr15	64652164	64652264	6046008	0	+	0.48	(0.476,0.515]	chr15	575706	80	INTRON	INTRON	ZNF609	ENSG00000180357.10	ENST00000326648.5:ENST00000558680.5:ENST00000559364.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	88	2	2.3346	4.2742450000000005	6.21389	0.00494807	1.41639e-5	0.0646039	0.00299745
chr7	111297690	111297790	3621459	0	-	0.32	(0.28,0.32]	chr7	337093	3338	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	237	2	3.80936	4.274179999999999	4.739	6.8566e-6	2.70644e-6	0.00196598	0.00105261
chr10	1017516	1017613	4379301	0	+	0.371134	(0.35,0.378]	chr10	403899	4	UTR3	UTR3:EXON_MRNA	GTPBP4	ENSG00000107937.19	ENST00000360803.9	protein_coding	protein_coding	protein_coding	protein_coding	1	61	2	3.08431	4.274125	5.46394	0.0065853	2.60035e-4	0.0701901	0.014326
chr5	138518200	138518297	2732417	0	-	0.443299	(0.44,0.476]	chr5	257402	1	SS5_PROX	SS5_PROX:INTRON	ETF1	ENSG00000120705.13	ENST00000360541.10:ENST00000499810.6:ENST00000503014.5:ENST00000512198.1:ENST00000572514.5:ENST00000507939.5:ENST00000514005.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	210	2	4.03744	4.274095	4.51075	4.49227e-6	6.40303e-8	0.00156203	1.09557e-4
chr5	95739765	95739865	2431327	0	+	0.55	(0.515,0.57]	chr5	233646	23	INTRON	INTRON	RHOBTB3	ENSG00000164292.13	ENST00000504949.1:ENST00000506959.5:ENST00000379982.8:ENST00000510623.1:ENST00000502541.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	52	2	3.35609	4.2740849999999995	5.19208	0.00174131	3.4344e-4	0.0375363	0.0164987
chr15	58883301	58883389	6193596	0	-	0.329545	(0.32,0.35]	chr15	590011	3	SS5_PROX	SS5_PROX:INTRON	SLTM	ENSG00000137776.17	ENST00000380516.7:ENST00000432750.5:ENST00000560494.1:ENST00000492526.5:ENST00000493062.5:ENST00000557924.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	61	2	2.84569	4.274045	5.7024	0.0121137	5.25722e-4	0.0962599	0.0210958
chr14	22918400	22918498	5841617	0	-	0.469388	(0.44,0.476]	chr14	555213	2	INTRON	INTRON	RBM23	ENSG00000100461.18	ENST00000359890.8:ENST00000555209.5:ENST00000399922.6:ENST00000557667.5:ENST00000346528.9:ENST00000542016.6:ENST00000307814.10:ENST00000557403.5:ENST00000555722.5:ENST00000553920.5:ENST00000557227.5:ENST00000555714.5:ENST00000554256.5:ENST00000556687.5:ENST00000553902.5:ENST00000554955.5:ENST00000556984.5:ENST00000557549.5:ENST00000555676.5:ENST00000557571.5:ENST00000556862.5:ENST00000557464.5:ENST00000554618.5:ENST00000556365.1:ENST00000553777.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	56	2	2.89047	4.2739	5.65733	0.00955699	2.3957e-4	0.0863913	0.0142132
chr5	133964205	133964305	2725675	0	-	0.27	[0,0.28]	chr5	256407	38	INTRON	INTRON	C5orf15	ENSG00000113583.8	ENST00000231512.5:ENST00000507191.1:ENST00000509913.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	90	2	2.8486	4.27363	5.69866	0.00254189	0.00175225	0.0465056	0.0376491
chr17	66510867	66510966	6664381	0	+	0.535354	(0.515,0.57]	chr17	650332	142	INTRON	INTRON	PRKCA	ENSG00000154229.12	ENST00000413366.8:ENST00000578063.5:ENST00000284384.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	69	2	2.804	4.27358	5.74316	0.00215855	2.06122e-5	0.0417866	0.00352433
chr1	226173496	226173595	646926	0	-	0.424242	(0.408,0.44]	chr1	76667	71	INTRON	INTRON	ACBD3	ENSG00000182827.9	ENST00000366812.6	protein_coding	protein_coding	protein_coding	protein_coding	2	72	2	3.01942	4.2735	5.52758	7.74413e-4	4.54953e-4	0.0256083	0.0196892
chr7	123737918	123738018	3632550	0	-	0.26	[0,0.28]	chr7	337581	283	INTRON	INTRON	WASL	ENSG00000106299.8	ENST00000223023.5	protein_coding	protein_coding	protein_coding	protein_coding	4	131	2	2.74829	4.273465	5.79864	0.00125481	5.37913e-4	0.0323608	0.0209808
chr17	82922467	82922565	6695958	0	+	0.326531	(0.32,0.35]	chr17	655044	5	INTRON	INTRON	TBCD	ENSG00000141556.22	ENST00000682479.1:ENST00000682722.1:ENST00000684464.1:ENST00000684544.1:ENST00000681983.1:ENST00000684361.1:ENST00000683184.1:ENST00000683282.1:ENST00000684408.1:ENST00000355528.9:ENST00000683444.1:ENST00000684776.1:ENST00000683041.1:ENST00000684760.1:ENST00000684349.1:ENST00000682213.1:ENST00000539345.6:ENST00000684000.1:ENST00000684188.1:ENST00000684429.1:ENST00000682610.1:ENST00000683821.1:ENST00000682654.1:ENST00000683584.1:ENST00000682099.1:ENST00000684559.1:ENST00000576760.5:ENST00000683839.1:ENST00000574975.5:ENST00000571796.5:ENST00000682315.1:ENST00000574422.1:ENST00000576677.6:ENST00000571618.5:ENST00000574886.2:ENST00000574818.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	59	2	3.41554	4.273385	5.13123	0.00394704	0.00153152	0.0548259	0.0361484
chr3	72425006	72425106	1745705	0	-	0.34	(0.32,0.35]	chr3	177368	445	INTRON	INTRON	RYBP	ENSG00000163602.12	ENST00000477973.5	protein_coding	protein_coding	protein_coding	protein_coding	1	59	2	3.41554	4.273385	5.13123	0.00394704	0.00153152	0.0548259	0.0361484
chr8	17933311	17933411	3707830	0	+	0.34	(0.32,0.35]	chr8	343815	55	INTRON	INTRON	PCM1	ENSG00000078674.19	ENST00000518930.1:ENST00000325083.13:ENST00000517730.5:ENST00000518537.5:ENST00000518936.5:ENST00000523055.5:ENST00000519253.5:ENST00000524226.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	59	2	3.41554	4.273385	5.13123	0.00394704	0.00153152	0.0548259	0.0361484
chr12	11153297	11153397	5269331	0	-	0.26	[0,0.28]	chr12	502262	188	INTRON	INTRON	ENSG00000275778:PRH1	ENSG00000275778.2:ENSG00000231887.8	ENST00000536668.2:ENST00000535024.6:ENST00000541977.5:ENST00000546265.1:ENST00000541175.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	29	2	4.07901	4.273135	4.46726	0.0494049	0.0427997	0.174117	0.148082
chr12	118333636	118333736	5429898	0	-	0.23	[0,0.28]	chr12	518768	361	INTRON	INTRON	TAOK3	ENSG00000135090.14	ENST00000392533.8:ENST00000419821.6:ENST00000541186.5:ENST00000541878.5:ENST00000542902.5:ENST00000542532.5:ENST00000541786.5:ENST00000539872.5:ENST00000542692.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	29	2	4.07901	4.273135	4.46726	0.0494049	0.0427997	0.174117	0.148082
chr13	50077246	50077345	5594546	0	-	0.262626	[0,0.28]	chr13	534723	12	INTRON	INTRON	DLEU2	ENSG00000231607.14	ENST00000621282.4:ENST00000688690.1:ENST00000668305.1:ENST00000425586.5:ENST00000686946.1:ENST00000458725.7:ENST00000692504.1:ENST00000443587.6:ENST00000686700.1:ENST00000691340.1:ENST00000433070.7:ENST00000659339.1:ENST00000662092.1:ENST00000666359.2:ENST00000449579.2:ENST00000421758.6:ENST00000690259.1	lncRNA	lncRNA	lncRNA	lncRNA	0	29	2	4.07901	4.273135	4.46726	0.0494049	0.0427997	0.174117	0.148082
chr15	57138189	57138289	6034316	0	+	0.27	[0,0.28]	chr15	574707	33	INTRON	INTRON	TCF12	ENSG00000140262.18	ENST00000438423.6:ENST00000267811.9:ENST00000333725.10:ENST00000560190.5:ENST00000559609.5:ENST00000557843.5:ENST00000557947.5:ENST00000561152.1:ENST00000561346.5:ENST00000559216.5:ENST00000560887.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	29	2	4.07901	4.273135	4.46726	0.0494049	0.0427997	0.174117	0.148082
chr16	66804203	66804300	6502751	0	-	0.257732	[0,0.28]	chr16	629164	7	INTRON	INTRON	NAE1	ENSG00000159593.15	ENST00000359087.8:ENST00000562428.6:ENST00000290810.8:ENST00000566663.5:ENST00000379463.6:ENST00000568672.1:ENST00000563221.5:ENST00000394074.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	29	2	4.07901	4.273135	4.46726	0.0494049	0.0427997	0.174117	0.148082
chr16	70672610	70672709	6512052	0	-	0.222222	[0,0.28]	chr16	630830	67	INTRON	INTRON	MTSS2	ENSG00000132613.16	ENST00000338779.11	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	4.07901	4.273135	4.46726	0.0494049	0.0427997	0.174117	0.148082
chr19	4960899	4960996	7003402	0	+	0.278351	[0,0.28]	chr19	694796	2	UTR3	UTR3:EXON_MRNA	UHRF1	ENSG00000276043.5	ENST00000612630.4:ENST00000620565.4:ENST00000624301.3:ENST00000613817.4:ENST00000650932.1:ENST00000615884.4:ENST00000622802.4:ENST00000616255.1	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	4.07901	4.273135	4.46726	0.0494049	0.0427997	0.174117	0.148082
chr2	240023634	240023733	1345723	0	-	0.222222	[0,0.28]	chr2	141132	9	INTRON	INTRON	NDUFA10	ENSG00000130414.13	ENST00000679183.1:ENST00000677057.1:ENST00000676782.1:ENST00000677407.1:ENST00000676929.1:ENST00000678455.1:ENST00000252711.7:ENST00000677692.1:ENST00000476216.6:ENST00000677395.1:ENST00000678188.1:ENST00000677979.1:ENST00000678914.1:ENST00000678562.1:ENST00000678832.1:ENST00000677155.1:ENST00000677764.1:ENST00000677294.1:ENST00000678468.1:ENST00000678158.1:ENST00000676491.1:ENST00000677114.1:ENST00000404554.5:ENST00000620965.5:ENST00000485344.6:ENST00000679308.1:ENST00000677567.1:ENST00000679158.1:ENST00000443626.5:ENST00000444548.6:ENST00000448880.6:ENST00000677490.1:ENST00000307300.8:ENST00000678898.1:ENST00000677368.1:ENST00000677263.1:ENST00000678289.1:ENST00000676784.1:ENST00000414580.2:ENST00000679332.1:ENST00000678737.1:ENST00000407129.3:ENST00000497536.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	29	2	4.07901	4.273135	4.46726	0.0494049	0.0427997	0.174117	0.148082
chr3	60191732	60191832	1711531	0	-	0.14	[0,0.28]	chr3	176138	1110	INTRON	INTRON	FHIT	ENSG00000189283.10	ENST00000492590.6:ENST00000476844.5:ENST00000468189.5:ENST00000488467.5	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	4.07901	4.273135	4.46726	0.0494049	0.0427997	0.174117	0.148082
chr4	23019078	23019178	1928313	0	+	0.2	[0,0.28]	chr4	193937	138	INTRON	INTRON	ENSG00000248837	ENSG00000248837.7	ENST00000659942.1:ENST00000655325.1:ENST00000655182.1:ENST00000660103.1:ENST00000506425.2:ENST00000652324.1:ENST00000653008.1:ENST00000654546.1:ENST00000666412.1:ENST00000511453.5:ENST00000667179.1:ENST00000655768.1:ENST00000661585.1:ENST00000660296.1:ENST00000663529.1:ENST00000653872.1:ENST00000660370.1:ENST00000667156.1:ENST00000658109.1:ENST00000653188.1:ENST00000662431.1:ENST00000654588.1:ENST00000666579.1:ENST00000503017.2:ENST00000665739.1:ENST00000671537.1:ENST00000663348.1	lncRNA	lncRNA	lncRNA	lncRNA	0	29	2	4.07901	4.273135	4.46726	0.0494049	0.0427997	0.174117	0.148082
chr6	45358110	45358210	3103791	0	-	0.28	[0,0.28]	chr6	290493	348	INTRON	INTRON	SUPT3H	ENSG00000196284.17	ENST00000475057.5:ENST00000371459.6:ENST00000371460.5:ENST00000459689.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	29	2	4.07901	4.273135	4.46726	0.0494049	0.0427997	0.174117	0.148082
chr6	57384876	57384975	2879779	0	+	0.232323	[0,0.28]	chr6	273397	14	INTRON	INTRON	PRIM2	ENSG00000146143.19	ENST00000672107.1:ENST00000615550.5:ENST00000490313.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	29	2	4.07901	4.273135	4.46726	0.0494049	0.0427997	0.174117	0.148082
chr7	132867264	132867364	3643733	0	-	0.23	[0,0.28]	chr7	338836	284	INTRON	INTRON	CHCHD3	ENSG00000106554.13	ENST00000262570.10:ENST00000448878.6:ENST00000496427.5:ENST00000423635.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	29	2	4.07901	4.273135	4.46726	0.0494049	0.0427997	0.174117	0.148082
chr7	133695419	133695519	3422605	0	+	0.24	[0,0.28]	chr7	319395	649	INTRON	INTRON	EXOC4	ENSG00000131558.15	ENST00000253861.5:ENST00000479839.6:ENST00000483800.5:ENST00000469115.5:ENST00000489931.5:ENST00000482089.5:ENST00000460346.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	29	2	4.07901	4.273135	4.46726	0.0494049	0.0427997	0.174117	0.148082
chr19	23809076	23809164	7042899	0	+	0.295455	(0.28,0.32]	chr19	702237	4	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	RPSAP58	ENSG00000288920.1	ENST00000471224.5:ENST00000692590.1:ENST00000475499.2:ENST00000686829.1:ENST00000689525.1:ENST00000691397.1:ENST00000688405.1:ENST00000687994.1:ENST00000484897.4:ENST00000685490.1:ENST00000462186.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	147	2	4.10834	4.2727699999999995	4.4372	1.53575e-4	1.18534e-5	0.0113219	0.0025447
chr10	74177585	74177685	4456032	0	+	0.32	(0.28,0.32]	chr10	411534	3	INTRON	INTRON	ADK	ENSG00000156110.15	ENST00000672429.1:ENST00000539909.6:ENST00000286621.7:ENST00000478611.2:ENST00000673352.1:ENST00000673310.1:ENST00000672920.1:ENST00000672394.1:ENST00000372734.5:ENST00000673027.1:ENST00000541550.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	29	2	3.88145	4.27252	4.66359	0.0561985	0.0193496	0.18407	0.108861
chr15	59082549	59082644	6039843	0	+	0.305263	(0.28,0.32]	chr15	575024	9	INTRON	INTRON	RNF111	ENSG00000157450.16	ENST00000348370.9:ENST00000559209.5:ENST00000557998.5:ENST00000561186.5:ENST00000558977.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	29	2	3.88145	4.27252	4.66359	0.0561985	0.0193496	0.18407	0.108861
chr2	113481020	113481119	853914	0	+	0.30303	(0.28,0.32]	chr2	95830	96	INTRON	INTRON	CBWD2	ENSG00000136682.16	ENST00000259199.9:ENST00000416503.6:ENST00000358604.7:ENST00000456188.5:ENST00000479583.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	29	2	3.88145	4.27252	4.66359	0.0561985	0.0193496	0.18407	0.108861
chr2	183180204	183180302	938880	0	+	0.285714	(0.28,0.32]	chr2	103028	4	INTRON	INTRON	ENSG00000272800	ENSG00000272800.3	ENST00000661621.1	lncRNA	lncRNA	lncRNA	lncRNA	0	29	2	3.88145	4.27252	4.66359	0.0561985	0.0193496	0.18407	0.108861
chrX	73965139	73965236	7682309	0	+	0.309278	(0.28,0.32]	chrX	786634	20	INTRON	INTRON	JPX	ENSG00000225470.8	ENST00000664637.1:ENST00000639185.1:ENST00000655090.1:ENST00000640437.1:ENST00000660546.1:ENST00000667886.1:ENST00000660840.1:ENST00000657179.1:ENST00000670506.1:ENST00000657910.1:ENST00000662120.1:ENST00000671207.1:ENST00000659254.1:ENST00000656624.1:ENST00000667573.1:ENST00000660856.1:ENST00000660836.1:ENST00000668590.1:ENST00000658649.1:ENST00000414209.6:ENST00000654137.1:ENST00000670994.1:ENST00000653479.1:ENST00000602772.5:ENST00000655879.1:ENST00000657372.1:ENST00000657096.1:ENST00000602985.6:ENST00000670685.1:ENST00000670503.1:ENST00000663027.1:ENST00000654995.1:ENST00000602895.6:ENST00000654374.1:ENST00000660087.1:ENST00000665032.1:ENST00000671336.1:ENST00000671476.1:ENST00000667057.1:ENST00000670192.1:ENST00000670464.1:ENST00000665345.1:ENST00000661546.1:ENST00000662543.1:ENST00000602938.6:ENST00000664295.1:ENST00000654005.1:ENST00000669149.1:ENST00000659852.1:ENST00000656509.1:ENST00000602294.6:ENST00000667294.1:ENST00000663470.1:ENST00000602920.6:ENST00000671021.1:ENST00000659849.1:ENST00000667937.1:ENST00000661130.1:ENST00000654196.1:ENST00000655994.1:ENST00000659373.1:ENST00000662239.1:ENST00000670805.1:ENST00000656263.1:ENST00000653069.1:ENST00000657638.1:ENST00000653808.1:ENST00000653929.1:ENST00000653885.1:ENST00000659023.1:ENST00000602546.5:ENST00000659622.1:ENST00000671518.1:ENST00000670408.1	lncRNA	lncRNA	lncRNA	lncRNA	0	29	2	3.88145	4.27252	4.66359	0.0561985	0.0193496	0.18407	0.108861
chr17	32448538	32448637	6598384	0	+	0.464646	(0.44,0.476]	chr17	641971	11	INTRON	INTRON	PSMD11	ENSG00000108671.11	ENST00000578213.5:ENST00000649012.1:ENST00000457654.6:ENST00000578397.5:ENST00000579451.1:ENST00000261712.8:ENST00000580904.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	72	2	3.05373	4.272349999999999	5.49097	6.56725e-4	4.8612e-4	0.0232396	0.0203841
chr8	61659514	61659614	3958550	0	-	0.37	(0.35,0.378]	chr8	363143	35	UTR3	UTR3:EXON_MRNA:INTRON	ASPH	ENSG00000198363.18	ENST00000379454.9:ENST00000541428.5:ENST00000522349.5:ENST00000523927.5:ENST00000445642.6:ENST00000356457.9:ENST00000519234.5:ENST00000518068.5:ENST00000517903.5:ENST00000517847.6:ENST00000522835.5:ENST00000518306.5:ENST00000517856.5	protein_coding	protein_coding	protein_coding	protein_coding	1	65	2	2.53856	4.2722999999999995	6.00604	0.0326077	1.74719e-5	0.133687	0.00318005
chr9	91933219	91933319	4285098	0	-	0.58	(0.57,1]	chr9	393926	89	INTRON	INTRON	ROR2	ENSG00000169071.15	ENST00000375715.5:ENST00000375708.4:ENST00000495386.5:ENST00000546883.1:ENST00000476440.1:ENST00000493846.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	86	2	3.99966	4.27227	4.54488	7.75921e-7	7.68989e-7	5.42883e-4	4.91693e-4
chr1	223795117	223795215	642848	0	-	0.326531	(0.32,0.35]	chr1	75882	13	INTRON	INTRON	TP53BP2	ENSG00000143514.17	ENST00000343537.12:ENST00000391878.6:ENST00000483398.5:ENST00000498843.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	27	2	4.17181	4.27225	4.37269	0.04531	0.0154102	0.149888	0.108569
chr10	12115709	12115806	4393853	0	+	0.329897	(0.32,0.35]	chr10	405311	23	INTRON	INTRON	DHTKD1	ENSG00000181192.12	ENST00000263035.9	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.17181	4.27225	4.37269	0.04531	0.0154102	0.149888	0.108569
chr11	87079792	87079892	4843231	0	+	0.34	(0.32,0.35]	chr11	451850	78	INTRON	INTRON	TMEM135	ENSG00000166575.17	ENST00000340353.11:ENST00000529023.5:ENST00000526733.5:ENST00000305494.6:ENST00000532959.5:ENST00000525018.5:ENST00000531800.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	27	2	4.17181	4.27225	4.37269	0.04531	0.0154102	0.149888	0.108569
chr16	56464682	56464779	6359696	0	+	0.340206	(0.32,0.35]	chr16	610368	17	INTRON	INTRON	OGFOD1	ENSG00000087263.17	ENST00000561646.5:ENST00000562150.5:ENST00000569802.5:ENST00000336111.9:ENST00000568172.1:ENST00000566157.6:ENST00000568397.1:ENST00000565209.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	27	2	4.17181	4.27225	4.37269	0.04531	0.0154102	0.149888	0.108569
chr17	17201978	17202076	6735755	0	-	0.326531	(0.32,0.35]	chr17	660850	11	UTR3	UTR3:EXON_MRNA	PLD6	ENSG00000179598.6	ENST00000321560.4	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.17181	4.27225	4.37269	0.04531	0.0154102	0.149888	0.108569
chr2	96833505	96833603	830816	0	+	0.336735	(0.32,0.35]	chr2	92929	10	UTR3	UTR3:EXON_MRNA	CNNM3	ENSG00000168763.16	ENST00000377060.7:ENST00000305510.4:ENST00000465224.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	27	2	4.17181	4.27225	4.37269	0.04531	0.0154102	0.149888	0.108569
chr21	18715935	18716035	7434962	0	-	0.33	(0.32,0.35]	chr21	758112	1033	INTRON	INTRON	MIR548XHG	ENSG00000224141.6	ENST00000671206.1:ENST00000437492.6:ENST00000355189.7:ENST00000653218.1:ENST00000656413.1:ENST00000414582.1	lncRNA	lncRNA	lncRNA	lncRNA	0	27	2	4.17181	4.27225	4.37269	0.04531	0.0154102	0.149888	0.108569
chr6	53090791	53090891	2877812	0	+	0.35	(0.32,0.35]	chr6	273154	78	INTRON	INTRON	FBXO9	ENSG00000112146.17	ENST00000370939.7:ENST00000323557.12:ENST00000244426.10:ENST00000480463.6:ENST00000484812.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	27	2	4.17181	4.27225	4.37269	0.04531	0.0154102	0.149888	0.108569
chr8	17960944	17961042	3708128	0	+	0.326531	(0.32,0.35]	chr8	343900	1	INTRON	INTRON	PCM1	ENSG00000078674.19	ENST00000325083.13:ENST00000519253.5:ENST00000524226.5:ENST00000517836.5:ENST00000518762.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	27	2	4.17181	4.27225	4.37269	0.04531	0.0154102	0.149888	0.108569
chr8	73745207	73745305	3970912	0	-	0.326531	(0.32,0.35]	chr8	364191	25	INTRON	INTRON	STAU2:ENSG00000258677	ENSG00000040341.18:ENSG00000258677.2	ENST00000524300.6:ENST00000523558.5:ENST00000521210.5:ENST00000355780.9:ENST00000521727.5:ENST00000521451.5:ENST00000522509.5:ENST00000517542.5:ENST00000518981.5:ENST00000518767.5:ENST00000518502.5:ENST00000521293.5:ENST00000521447.5:ENST00000524104.5:ENST00000522962.5:ENST00000521419.5:ENST00000524191.5:ENST00000524113.5:ENST00000520945.5:ENST00000521736.5:ENST00000521845.5:ENST00000520872.5:ENST00000358757.5:ENST00000519818.5:ENST00000522061.5:ENST00000523160.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	27	2	4.17181	4.27225	4.37269	0.04531	0.0154102	0.149888	0.108569
chr12	70281046	70281144	5166810	0	+	0.346939	(0.32,0.35]	chr12	489381	24	INTRON	INTRON	CNOT2	ENSG00000111596.14	ENST00000547780.5:ENST00000418359.7:ENST00000552319.5:ENST00000550160.5:ENST00000551661.5:ENST00000551132.5:ENST00000553078.5:ENST00000548021.5:ENST00000550641.6:ENST00000229195.8:ENST00000552915.5:ENST00000549443.5:ENST00000548741.5:ENST00000552483.5:ENST00000552422.5:ENST00000547321.5:ENST00000553020.5:ENST00000548159.5:ENST00000549750.5:ENST00000551043.5:ENST00000548599.5:ENST00000550194.5:ENST00000551873.5:ENST00000547867.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	109	2	2.5774	4.27213	5.96686	8.38017e-4	1.77352e-4	0.0263691	0.0121697
chr21	17607975	17608074	7433040	0	-	0.454545	(0.44,0.476]	chr21	758033	26	INTRON	INTRON	BTG3	ENSG00000154640.15	ENST00000348354.7:ENST00000339775.10	protein_coding	protein_coding	protein_coding	protein_coding	1	60	2	3.54632	4.27207	4.99782	0.0013223	9.9951e-4	0.0333932	0.0288906
chr1	8695267	8695367	372558	0	-	0.33	(0.32,0.35]	chr1	43541	385	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000656437.1:ENST00000659924.1:ENST00000480342.5:ENST00000468247.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	27	2	4.27113	4.272065	4.273	0.0368357	0.0199982	0.138959	0.120668
chr1	70165009	70165108	479483	0	-	0.333333	(0.32,0.35]	chr1	57643	52	INTRON	INTRON	LRRC40	ENSG00000066557.6	ENST00000370952.4	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.27113	4.272065	4.273	0.0368357	0.0199982	0.138959	0.120668
chr10	35553585	35553685	4426688	0	+	0.34	(0.32,0.35]	chr10	407957	4	SS5_PROX	SS5_PROX:INTRON	CCNY	ENSG00000108100.18	ENST00000374706.5:ENST00000374704.8:ENST00000265375.13:ENST00000339497.7:ENST00000465416.5:ENST00000497692.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	27	2	4.27113	4.272065	4.273	0.0368357	0.0199982	0.138959	0.120668
chr11	20503619	20503718	4752089	0	+	0.323232	(0.32,0.35]	chr11	440049	90	INTRON	INTRON	PRMT3	ENSG00000185238.13	ENST00000330796.9:ENST00000331079.11:ENST00000437750.2:ENST00000529592.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	27	2	4.27113	4.272065	4.273	0.0368357	0.0199982	0.138959	0.120668
chr11	33260386	33260486	4766651	0	+	0.33	(0.32,0.35]	chr11	440839	13	INTRON	INTRON	HIPK3	ENSG00000110422.12	ENST00000525975.5:ENST00000303296.9:ENST00000379016.7:ENST00000456517.2:ENST00000531504.5	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.27113	4.272065	4.273	0.0368357	0.0199982	0.138959	0.120668
chr15	28248351	28248451	6123303	0	-	0.33	(0.32,0.35]	chr15	583298	4	SS5_PROX	SS5_PROX:INTRON	HERC2	ENSG00000128731.18	ENST00000261609.13	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.27113	4.272065	4.273	0.0368357	0.0199982	0.138959	0.120668
chr17	37178460	37178560	6760700	0	-	0.33	(0.32,0.35]	chr17	664702	161	INTRON	INTRON	ACACA	ENSG00000278540.5	ENST00000616317.5:ENST00000614428.4:ENST00000612895.4:ENST00000619546.4:ENST00000617649.4:ENST00000618575.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	27	2	4.27113	4.272065	4.273	0.0368357	0.0199982	0.138959	0.120668
chr17	77462603	77462703	6681279	0	+	0.35	(0.32,0.35]	chr17	652565	57	INTRON	INTRON	SEPTIN9	ENSG00000184640.20	ENST00000591198.5:ENST00000427177.6:ENST00000431235.6:ENST00000449803.6:ENST00000329047.13:ENST00000588575.1:ENST00000590294.6:ENST00000588690.6:ENST00000423034.6:ENST00000590059.5:ENST00000427674.6:ENST00000592420.1:ENST00000585930.5:ENST00000591020.5:ENST00000586521.5:ENST00000588958.6:ENST00000586128.5:ENST00000541152.6:ENST00000589250.6:ENST00000591704.5:ENST00000591088.5:ENST00000592481.6:ENST00000590938.5:ENST00000592951.5:ENST00000586433.5:ENST00000585929.5:ENST00000590917.5:ENST00000591472.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	27	2	4.27113	4.272065	4.273	0.0368357	0.0199982	0.138959	0.120668
chr19	13132410	13132509	7022791	0	+	0.333333	(0.32,0.35]	chr19	698372	1	INTRON	INTRON	NACC1	ENSG00000160877.6	ENST00000586171.2:ENST00000292431.5	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.27113	4.272065	4.273	0.0368357	0.0199982	0.138959	0.120668
chr2	44458660	44458760	766308	0	+	0.34	(0.32,0.35]	chr2	86780	15	INTRON	INTRON	CAMKMT	ENSG00000143919.15	ENST00000378494.8:ENST00000402247.5:ENST00000407131.5:ENST00000428993.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	27	2	4.27113	4.272065	4.273	0.0368357	0.0199982	0.138959	0.120668
chr20	58997152	58997242	7359415	0	-	0.333333	(0.32,0.35]	chr20	750516	1	EXON_MRNA	EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CTSZ	ENSG00000101160.15	ENST00000681011.1:ENST00000680879.1:ENST00000680753.1:ENST00000681877.1:ENST00000681175.1:ENST00000681457.1:ENST00000680263.1:ENST00000681416.1:ENST00000488395.2:ENST00000217131.6:ENST00000680283.1:ENST00000681664.1:ENST00000680738.1:ENST00000680206.1:ENST00000680456.1:ENST00000681427.1:ENST00000681366.1:ENST00000680628.1:ENST00000680300.1:ENST00000680565.1:ENST00000681360.1:ENST00000680995.1:ENST00000680156.1:ENST00000679948.1:ENST00000679991.1:ENST00000679391.1:ENST00000681029.1:ENST00000503833.7:ENST00000681797.1:ENST00000680880.1:ENST00000680386.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:non_stop_decay:nonsense_mediated_decay:processed_transcript	0	27	2	4.27113	4.272065	4.273	0.0368357	0.0199982	0.138959	0.120668
chr21	15020950	15021050	7431821	0	-	0.33	(0.32,0.35]	chr21	757984	61	INTRON	INTRON	NRIP1	ENSG00000180530.11	ENST00000400202.5:ENST00000318948.7:ENST00000400199.5:ENST00000638122.1:ENST00000637963.1:ENST00000637630.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	27	2	4.27113	4.272065	4.273	0.0368357	0.0199982	0.138959	0.120668
chr4	76134462	76134562	2164301	0	-	0.33	(0.32,0.35]	chr4	213473	1	SS3_PROX	SS3_PROX:INTRON	NUP54	ENSG00000138750.16	ENST00000695546.1:ENST00000695547.1:ENST00000695552.1:ENST00000507257.6:ENST00000264883.8:ENST00000510569.6:ENST00000515460.6:ENST00000695554.1:ENST00000695553.1:ENST00000695548.1:ENST00000695551.1:ENST00000695556.1:ENST00000695549.1:ENST00000695550.1:ENST00000695555.1:ENST00000514313.2:ENST00000514987.6:ENST00000502850.5:ENST00000508465.6:ENST00000512151.5:ENST00000504173.1:ENST00000695557.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	27	2	4.27113	4.272065	4.273	0.0368357	0.0199982	0.138959	0.120668
chr5	72860808	72860908	2387569	0	+	0.33	(0.32,0.35]	chr5	230378	45	INTRON	INTRON	TNPO1	ENSG00000083312.19	ENST00000680533.1:ENST00000520850.5:ENST00000337273.10:ENST00000680025.1:ENST00000523768.5:ENST00000681711.1:ENST00000518279.5:ENST00000679378.1:ENST00000513944.5:ENST00000506351.6:ENST00000506528.5:ENST00000511754.5:ENST00000509030.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	27	2	4.27113	4.272065	4.273	0.0368357	0.0199982	0.138959	0.120668
chr7	135586878	135586976	3428615	0	+	0.346939	(0.32,0.35]	chr7	319663	15	INTRON	INTRON	NUP205	ENSG00000155561.15	ENST00000285968.11	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.27113	4.272065	4.273	0.0368357	0.0199982	0.138959	0.120668
chr8	120472297	120472394	3849195	0	+	0.329897	(0.32,0.35]	chr8	354558	15	EXON_MRNA	EXON_MRNA:INTRON	MTBP	ENSG00000172167.8	ENST00000305949.6:ENST00000522449.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	27	2	4.27113	4.272065	4.273	0.0368357	0.0199982	0.138959	0.120668
chr9	125058103	125058203	4351125	0	-	0.33	(0.32,0.35]	chr9	399524	17	INTRON	INTRON	SCAI	ENSG00000173611.18	ENST00000336505.11:ENST00000373549.8:ENST00000477186.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	27	2	4.27113	4.272065	4.273	0.0368357	0.0199982	0.138959	0.120668
chr1	113736515	113736615	525194	0	-	0.5	(0.476,0.515]	chr1	61795	96	INTRON	INTRON	PHTF1	ENSG00000116793.16	ENST00000369604.6:ENST00000393357.6:ENST00000369600.5:ENST00000369598.5:ENST00000357783.6:ENST00000472612.5:ENST00000486855.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	26	2	4.01777	4.271884999999999	4.526	0.0411361	0.00699701	0.1451	0.0754576
chr1	156560433	156560533	567410	0	-	0.51	(0.476,0.515]	chr1	68189	1	SS5_PROX	SS5_PROX:INTRON	IQGAP3	ENSG00000183856.11	ENST00000491900.1:ENST00000361170.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	26	2	4.01777	4.271884999999999	4.526	0.0411361	0.00699701	0.1451	0.0754576
chr13	29567445	29567545	5568102	0	-	0.48	(0.476,0.515]	chr13	532223	132	INTRON	INTRON	SLC7A1	ENSG00000139514.13	ENST00000380752.10:ENST00000450494.1	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.01777	4.271884999999999	4.526	0.0411361	0.00699701	0.1451	0.0754576
chr16	1622675	1622775	6274623	0	+	0.49	(0.476,0.515]	chr16	599386	73	INTRON	INTRON	CRAMP1	ENSG00000007545.16	ENST00000397412.8:ENST00000293925.9	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.01777	4.271884999999999	4.526	0.0411361	0.00699701	0.1451	0.0754576
chr16	29681703	29681803	6335406	0	+	0.49	(0.476,0.515]	chr16	606813	21	INTRON	INTRON	QPRT	ENSG00000103485.19	ENST00000449759.2:ENST00000219771.7:ENST00000395384.9:ENST00000562473.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	26	2	4.01777	4.271884999999999	4.526	0.0411361	0.00699701	0.1451	0.0754576
chr2	135065777	135065877	872804	0	+	0.51	(0.476,0.515]	chr2	97740	31	INTRON	INTRON	RAB3GAP1	ENSG00000115839.19	ENST00000539493.3:ENST00000688088.1:ENST00000693554.1:ENST00000690785.1:ENST00000689880.1:ENST00000264158.13:ENST00000690208.1:ENST00000691478.1:ENST00000686114.1:ENST00000685967.1:ENST00000442034.5:ENST00000687199.1:ENST00000691339.1:ENST00000688182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	26	2	4.01777	4.271884999999999	4.526	0.0411361	0.00699701	0.1451	0.0754576
chr5	131585496	131585595	2718673	0	-	0.484848	(0.476,0.515]	chr5	255608	231	INTRON	INTRON	RAPGEF6	ENSG00000158987.22	ENST00000509018.6:ENST00000507093.5:ENST00000296859.10:ENST00000627212.2:ENST00000308008.10:ENST00000515170.5:ENST00000510071.5:ENST00000503398.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	26	2	4.01777	4.271884999999999	4.526	0.0411361	0.00699701	0.1451	0.0754576
chr6	149614141	149614240	3245775	0	-	0.50505	(0.476,0.515]	chr6	301582	90	INTRON	INTRON	KATNA1	ENSG00000186625.14	ENST00000335643.12:ENST00000367411.7:ENST00000335647.9:ENST00000494504.5:ENST00000470620.1:ENST00000444282.5:ENST00000420200.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	26	2	4.01777	4.271884999999999	4.526	0.0411361	0.00699701	0.1451	0.0754576
chr2	128194193	128194292	863553	0	+	0.474747	(0.44,0.476]	chr2	96899	46	UTR3	UTR3:EXON_MRNA	UGGT1	ENSG00000136731.13	ENST00000259253.11	protein_coding	protein_coding	protein_coding	protein_coding	1	62	2	3.68473	4.27145	4.85817	0.00223254	5.47507e-4	0.0435144	0.0215463
chr10	92554521	92554621	4665211	0	-	0.44	(0.408,0.44]	chr10	429881	4	SS5_PROX	SS5_PROX:INTRON	IDE	ENSG00000119912.18	ENST00000265986.11:ENST00000679312.1:ENST00000650060.1:ENST00000679089.1:ENST00000677569.1:ENST00000677096.1:ENST00000679222.1:ENST00000676540.1:ENST00000678026.1:ENST00000676626.1:ENST00000679069.1:ENST00000678977.1:ENST00000679232.1:ENST00000678844.1:ENST00000679174.1:ENST00000678673.1:ENST00000676816.1:ENST00000678715.1:ENST00000678458.1:ENST00000677079.1:ENST00000677434.1:ENST00000678248.1:ENST00000478361.6:ENST00000677978.1:ENST00000677196.1:ENST00000677953.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	58	2	3.2451	4.271445	5.29779	0.00337792	3.80479e-4	0.0516884	0.0176313
chr1	167227043	167227142	244910	0	+	0.484848	(0.476,0.515]	chr1	29245	57	INTRON	INTRON	POU2F1	ENSG00000143190.23	ENST00000559038.5:ENST00000367866.7:ENST00000557909.5:ENST00000271411.8:ENST00000429375.6:ENST00000560232.6:ENST00000442313.5:ENST00000367865.5:ENST00000492850.5:ENST00000541643.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	26	2	4.10113	4.271205	4.44128	0.0226984	0.0151924	0.124921	0.0994339
chr10	68680301	68680401	4442092	0	+	0.5	(0.476,0.515]	chr10	409558	69	INTRON	INTRON	TET1	ENSG00000138336.9	ENST00000373644.5	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.10113	4.271205	4.44128	0.0226984	0.0151924	0.124921	0.0994339
chr10	77825170	77825267	4653760	0	-	0.505155	(0.476,0.515]	chr10	428694	3	INTRON	INTRON	DLG5	ENSG00000151208.17	ENST00000372391.7:ENST00000475613.6:ENST00000424842.5:ENST00000468332.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	26	2	4.10113	4.271205	4.44128	0.0226984	0.0151924	0.124921	0.0994339
chr14	66540854	66540954	5757325	0	+	0.49	(0.476,0.515]	chr14	546625	311	INTRON	INTRON	GPHN	ENSG00000171723.16	ENST00000315266.9:ENST00000459628.5:ENST00000478722.6:ENST00000543237.5:ENST00000556633.5:ENST00000555668.5:ENST00000553936.5:ENST00000557654.5:ENST00000556020.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	26	2	4.10113	4.271205	4.44128	0.0226984	0.0151924	0.124921	0.0994339
chr15	20464697	20464796	6118525	0	-	0.494949	(0.476,0.515]	chr15	582461	13	INTRON	INTRON	HERC2P3	ENSG00000180229.12	ENST00000428453.5:ENST00000437318.5:ENST00000430598.5:ENST00000429257.5:ENST00000414804.5:ENST00000412154.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	26	2	4.10113	4.271205	4.44128	0.0226984	0.0151924	0.124921	0.0994339
chr15	66389715	66389815	6049263	0	+	0.48	(0.476,0.515]	chr15	576031	19	INTRON	INTRON	MAP2K1	ENSG00000169032.11	ENST00000425818.2:ENST00000689951.1:ENST00000685763.1:ENST00000307102.10:ENST00000691576.1:ENST00000686347.1:ENST00000691077.1:ENST00000687191.1:ENST00000691937.1:ENST00000692487.1:ENST00000685172.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	26	2	4.10113	4.271205	4.44128	0.0226984	0.0151924	0.124921	0.0994339
chr15	85095955	85096055	6090083	0	+	0.51	(0.476,0.515]	chr15	579554	44	INTRON	INTRON	PDE8A	ENSG00000073417.15	ENST00000310298.8:ENST00000557957.5:ENST00000394553.6:ENST00000339708.9:ENST00000478717.5:ENST00000485596.5:ENST00000559742.5:ENST00000559086.5:ENST00000560789.5:ENST00000557819.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	26	2	4.10113	4.271205	4.44128	0.0226984	0.0151924	0.124921	0.0994339
chr17	46321270	46321370	6785677	0	-	0.51	(0.476,0.515]	chr17	669296	3	INTRON	INTRON	ARL17B	ENSG00000228696.10	ENST00000570618.5:ENST00000656849.1:ENST00000434041.6:ENST00000572991.5:ENST00000622877.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	26	2	4.10113	4.271205	4.44128	0.0226984	0.0151924	0.124921	0.0994339
chr17	78415227	78415327	6682670	0	+	0.51	(0.476,0.515]	chr17	652833	2	SS5_PROX	SS5_PROX:INTRON	PGS1	ENSG00000087157.19	ENST00000262764.11:ENST00000589425.5:ENST00000589426.5:ENST00000588169.5:ENST00000585521.2:ENST00000588281.5:ENST00000591996.1:ENST00000586019.1:ENST00000586355.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	26	2	4.10113	4.271205	4.44128	0.0226984	0.0151924	0.124921	0.0994339
chr17	78823981	78824081	6846229	0	-	0.51	(0.476,0.515]	chr17	677447	4	INTRON	INTRON	USP36	ENSG00000055483.20	ENST00000589225.5:ENST00000592231.6:ENST00000449938.7:ENST00000542802.7:ENST00000693020.1:ENST00000312010.10:ENST00000588086.6:ENST00000586066.3:ENST00000589424.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	26	2	4.10113	4.271205	4.44128	0.0226984	0.0151924	0.124921	0.0994339
chr19	4378464	4378563	7119906	0	-	0.494949	(0.476,0.515]	chr19	716279	111	INTRON	INTRON	SH3GL1	ENSG00000141985.9	ENST00000269886.7:ENST00000598564.5:ENST00000417295.6:ENST00000593591.5:ENST00000598230.5:ENST00000598219.1	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.10113	4.271205	4.44128	0.0226984	0.0151924	0.124921	0.0994339
chr2	32147856	32147955	729675	0	+	0.50505	(0.476,0.515]	chr2	84132	2	INTRON	INTRON	SPAST	ENSG00000021574.13	ENST00000315285.9:ENST00000646571.1:ENST00000621856.2:ENST00000642455.1:ENST00000642281.1:ENST00000644408.1:ENST00000642751.1:ENST00000642999.1:ENST00000644954.1:ENST00000646082.1:ENST00000645671.1:ENST00000647007.1:ENST00000643334.1:ENST00000647133.1:ENST00000645730.1:ENST00000645159.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	26	2	4.10113	4.271205	4.44128	0.0226984	0.0151924	0.124921	0.0994339
chr2	61427821	61427921	1130124	0	-	0.48	(0.476,0.515]	chr2	121499	66	INTRON	INTRON	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000453133.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	26	2	4.10113	4.271205	4.44128	0.0226984	0.0151924	0.124921	0.0994339
chr2	62219412	62219512	790234	0	+	0.49	(0.476,0.515]	chr2	88699	34	INTRON	INTRON	B3GNT2	ENSG00000170340.11	ENST00000301998.5:ENST00000405767.1	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.10113	4.271205	4.44128	0.0226984	0.0151924	0.124921	0.0994339
chr5	62416314	62416413	2363035	0	+	0.494949	(0.476,0.515]	chr5	227840	25	INTRON	INTRON	IPO11	ENSG00000086200.17	ENST00000514647.5:ENST00000424533.5:ENST00000505902.5:ENST00000325324.11:ENST00000506200.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	26	2	4.10113	4.271205	4.44128	0.0226984	0.0151924	0.124921	0.0994339
chr5	71518542	71518640	2384225	0	+	0.479592	(0.476,0.515]	chr5	229976	7	INTRON	INTRON	BDP1	ENSG00000145734.20	ENST00000358731.9:ENST00000508917.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	26	2	4.10113	4.271205	4.44128	0.0226984	0.0151924	0.124921	0.0994339
chr5	177190410	177190507	2554268	0	+	0.505155	(0.476,0.515]	chr5	243939	26	INTRON	INTRON	NSD1	ENSG00000165671.22	ENST00000508896.6:ENST00000689549.1:ENST00000354179.9:ENST00000686993.1:ENST00000689326.1:ENST00000439151.7:ENST00000510954.6:ENST00000689345.1:ENST00000347982.9:ENST00000687453.1:ENST00000685206.1:ENST00000638627.3:ENST00000644863.2:ENST00000688613.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	26	2	4.10113	4.271205	4.44128	0.0226984	0.0151924	0.124921	0.0994339
chr7	6720327	6720426	3273981	0	+	0.515152	(0.476,0.515]	chr7	304491	85	INTRON	INTRON	PMS2CL	ENSG00000187953.10	ENST00000486256.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	26	2	4.10113	4.271205	4.44128	0.0226984	0.0151924	0.124921	0.0994339
chr7	65968007	65968107	3538077	0	-	0.49	(0.476,0.515]	chr7	329999	1	SS3_PROX	SS3_PROX:INTRON	GUSB	ENSG00000169919.17	ENST00000304895.9:ENST00000466883.5:ENST00000430730.5:ENST00000447929.5:ENST00000421103.5:ENST00000462371.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	26	2	4.10113	4.271205	4.44128	0.0226984	0.0151924	0.124921	0.0994339
chr9	137672036	137672135	4224011	0	+	0.494949	(0.476,0.515]	chr9	388187	42	INTRON	INTRON	EHMT1	ENSG00000181090.21	ENST00000462484.5:ENST00000371394.6:ENST00000630754.2:ENST00000460843.6:ENST00000626216.2:ENST00000629335.2:ENST00000637335.1:ENST00000636376.1:ENST00000637655.1:ENST00000636027.1:ENST00000492232.5:ENST00000460486.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	26	2	4.10113	4.271205	4.44128	0.0226984	0.0151924	0.124921	0.0994339
chrX	14850104	14850204	7766256	0	-	0.48	(0.476,0.515]	chrX	793674	2	SS5_PROX	SS5_PROX:INTRON	FANCB	ENSG00000181544.16	ENST00000696351.1:ENST00000696352.1:ENST00000696353.1:ENST00000696354.1:ENST00000696322.1:ENST00000452869.2:ENST00000696311.1:ENST00000643728.2:ENST00000696355.1:ENST00000696312.1:ENST00000696356.1:ENST00000650831.1:ENST00000646255.1:ENST00000324138.7:ENST00000696357.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	26	2	4.10113	4.271205	4.44128	0.0226984	0.0151924	0.124921	0.0994339
chr22	19362830	19362930	7553722	0	-	0.39	(0.378,0.408]	chr22	772232	5	INTRON	INTRON	HIRA:C22orf39	ENSG00000100084.14:ENSG00000242259.9	ENST00000263208.5:ENST00000340170.8:ENST00000509549.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	59	2	3.10274	4.27083	5.43892	0.00586642	2.28412e-4	0.0668095	0.0133228
chr18	26041352	26041451	6959227	0	-	0.474747	(0.44,0.476]	chr18	688437	15	INTRON	INTRON	SS18	ENSG00000141380.14	ENST00000415083.7:ENST00000542420.6:ENST00000579640.5:ENST00000269138.9:ENST00000269137.11:ENST00000585121.5:ENST00000539244.6:ENST00000585241.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	73	2	3.18905	4.2706599999999995	5.35227	8.47974e-4	3.33091e-4	0.0267232	0.0162254
chr7	119898698	119898798	3630328	0	-	0.27	[0,0.28]	chr7	337335	975	INTRON	INTRON	LINC02476	ENSG00000225546.6	ENST00000660268.1:ENST00000431071.5:ENST00000426413.2	lncRNA	lncRNA	lncRNA	lncRNA	2	90	2	2.8773	4.270515	5.66373	0.00226728	0.00196371	0.0437013	0.0401678
chr1	21711795	21711895	396131	0	-	0.41	(0.408,0.44]	chr1	47253	45	INTRON	INTRON	USP48	ENSG00000090686.16	ENST00000400301.5:ENST00000308271.14:ENST00000374732.7:ENST00000529637.5	protein_coding	protein_coding	protein_coding	protein_coding	1	54	2	3.46104	4.270435	5.07983	0.00247652	0.00105552	0.0446195	0.0299229
chr8	140912019	140912119	4079179	0	-	0.42	(0.408,0.44]	chr8	370549	20	INTRON	INTRON	PTK2	ENSG00000169398.20	ENST00000696786.1:ENST00000522684.5:ENST00000395218.3:ENST00000521059.5:ENST00000517887.5:ENST00000519993.5:ENST00000340930.7:ENST00000519419.5:ENST00000524357.5:ENST00000521791.5:ENST00000523067.5:ENST00000520828.5:ENST00000520475.5:ENST00000519881.5:ENST00000520892.5:ENST00000523803.5:ENST00000521907.5:ENST00000517453.5:ENST00000520045.5:ENST00000521395.5:ENST00000523675.1:ENST00000521332.5:ENST00000524040.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	54	2	3.46104	4.270435	5.07983	0.00247652	0.00105552	0.0446195	0.0299229
chr3	186965816	186965916	1586529	0	+	0.4	(0.378,0.408]	chr3	164332	15	INTRON	INTRON	ST6GAL1	ENSG00000073849.16	ENST00000676786.1:ENST00000169298.8:ENST00000457772.6:ENST00000455441.5:ENST00000427315.5:ENST00000677292.1:ENST00000458216.5:ENST00000430309.5:ENST00000417392.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	197	2	3.47246	4.27037	5.06828	2.59391e-5	8.1541e-8	0.00422093	1.23205e-4
chr1	1765946	1766045	361611	0	-	0.464646	(0.44,0.476]	chr1	42219	1	INTRON	INTRON	NADK	ENSG00000008130.15	ENST00000378625.5:ENST00000341991.7:ENST00000341426.9:ENST00000492845.6:ENST00000492768.5:ENST00000460602.5:ENST00000464373.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	26	2	4.01038	4.27036	4.53034	0.0433743	0.00672609	0.148082	0.0738715
chr1	89826254	89826354	159575	0	+	0.46	(0.44,0.476]	chr1	17270	37	INTRON	INTRON	LRRC8D	ENSG00000171492.14	ENST00000525774.5:ENST00000337338.9:ENST00000394593.7	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.01038	4.27036	4.53034	0.0433743	0.00672609	0.148082	0.0738715
chr1	113976878	113976977	192294	0	+	0.474747	(0.44,0.476]	chr1	21240	35	UTR3	UTR3:EXON_MRNA	HIPK1	ENSG00000163349.22	ENST00000426820.7:ENST00000626993.2:ENST00000369558.5:ENST00000340480.8:ENST00000361587.3	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.01038	4.27036	4.53034	0.0433743	0.00672609	0.148082	0.0738715
chr11	18297364	18297458	4932070	0	-	0.446809	(0.44,0.476]	chr11	461836	4	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HPS5	ENSG00000110756.18	ENST00000396253.7:ENST00000349215.8:ENST00000438420.6:ENST00000531848.1	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.01038	4.27036	4.53034	0.0433743	0.00672609	0.148082	0.0738715
chr12	56353918	56354018	5334811	0	-	0.46	(0.44,0.476]	chr12	509813	1	SS5_PROX	SS5_PROX:INTRON	STAT2	ENSG00000170581.14	ENST00000314128.9:ENST00000651301.1:ENST00000651915.1:ENST00000651934.1:ENST00000652091.1:ENST00000651805.1:ENST00000651078.1:ENST00000650805.1:ENST00000652741.1:ENST00000652624.1:ENST00000556140.6:ENST00000652398.1:ENST00000651967.1:ENST00000557235.5:ENST00000418572.7:ENST00000555519.5:ENST00000557156.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	26	2	4.01038	4.27036	4.53034	0.0433743	0.00672609	0.148082	0.0738715
chr18	31934010	31934109	6961309	0	-	0.454545	(0.44,0.476]	chr18	688792	21	INTRON	INTRON	TRAPPC8	ENSG00000153339.15	ENST00000283351.10:ENST00000580104.5:ENST00000582539.5:ENST00000582513.5:ENST00000578658.1:ENST00000584876.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	26	2	4.01038	4.27036	4.53034	0.0433743	0.00672609	0.148082	0.0738715
chr19	52571736	52571836	7095710	0	+	0.45	(0.44,0.476]	chr19	711390	1	SS3_PROX	SS3_PROX:INTRON	ZNF701	ENSG00000167562.14	ENST00000478039.1:ENST00000596514.5:ENST00000391785.8:ENST00000301093.6:ENST00000540331.1:ENST00000593941.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	26	2	4.01038	4.27036	4.53034	0.0433743	0.00672609	0.148082	0.0738715
chr7	91322583	91322683	3349072	0	+	0.46	(0.44,0.476]	chr7	312129	12	INTRON	INTRON	ENSG00000243144	ENSG00000243144.7	ENST00000449361.5:ENST00000418395.1:ENST00000419226.5	lncRNA	lncRNA	lncRNA	lncRNA	0	26	2	4.01038	4.27036	4.53034	0.0433743	0.00672609	0.148082	0.0738715
chr6	167906470	167906570	3035145	0	+	0.24	[0,0.28]	chr6	282779	37	INTRON	INTRON	AFDN	ENSG00000130396.21	ENST00000683244.1:ENST00000351017.9:ENST00000344191.8:ENST00000392112.5:ENST00000392108.7:ENST00000400822.7:ENST00000447894.6:ENST00000366809.6:ENST00000366806.6:ENST00000423229.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	91	2	2.98675	4.270155	5.55356	0.00278704	0.00144853	0.0469265	0.0349199
chr1	96822943	96823042	168973	0	+	0.434343	(0.408,0.44]	chr1	18274	97	UTR3	UTR3:EXON_MRNA	PTBP2	ENSG00000117569.19	ENST00000609116.5	protein_coding	protein_coding	protein_coding	protein_coding	1	54	2	3.14706	4.27013	5.3932	0.00382411	7.81492e-4	0.0562562	0.0257168
chr7	158756906	158757005	3689076	0	-	0.212121	[0,0.28]	chr7	342353	37	INTRON	INTRON	ESYT2	ENSG00000117868.18	ENST00000251527.10:ENST00000275418.13:ENST00000652148.1	protein_coding	protein_coding	protein_coding	protein_coding	3	108	2	2.37401	4.2700949999999995	6.16618	0.00568456	3.33131e-4	0.0678837	0.016912
chr1	1264084	1264183	359095	0	-	0.585859	(0.57,1]	chr1	41459	3	INTRON	INTRON	UBE2J2	ENSG00000160087.21	ENST00000450390.6:ENST00000349431.11:ENST00000347370.6:ENST00000400929.6:ENST00000464036.5:ENST00000360466.6:ENST00000400930.8:ENST00000473215.5:ENST00000435198.5:ENST00000509720.5:ENST00000491779.5:ENST00000466752.5:ENST00000503294.5:ENST00000477894.5:ENST00000422076.5:ENST00000502382.1:ENST00000461142.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	20	2	4.16881	4.270085	4.37136	0.00574776	0.00345135	0.0681402	0.0517761
chr1	35870303	35870403	70507	0	+	0.66	(0.57,1]	chr1	9023	4	SS5_PROX	SS5_PROX:INTRON	AGO1	ENSG00000092847.13	ENST00000373206.5	protein_coding	protein_coding	protein_coding	protein_coding	0	20	2	4.16881	4.270085	4.37136	0.00574776	0.00345135	0.0681402	0.0517761
chr1	39485178	39485268	78844	0	+	0.6	(0.57,1]	chr1	10232	6	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MACF1	ENSG00000127603.32	ENST00000361689.7:ENST00000567887.5:ENST00000372915.8:ENST00000564288.6:ENST00000671089.2:ENST00000372925.6:ENST00000289893.8:ENST00000683517.1:ENST00000691623.1:ENST00000360115.8:ENST00000446276.5:ENST00000686657.1:ENST00000442046.5:ENST00000496360.5:ENST00000497807.1:ENST00000689726.1:ENST00000686687.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	20	2	4.16881	4.270085	4.37136	0.00574776	0.00345135	0.0681402	0.0517761
chr11	130074238	130074338	4885751	0	+	0.58	(0.57,1]	chr11	456911	31	INTRON	INTRON	APLP2	ENSG00000084234.18	ENST00000650012.1:ENST00000533616.5:ENST00000532456.5:ENST00000534761.5:ENST00000338167.10:ENST00000528499.5:ENST00000529701.1:ENST00000526330.5:ENST00000534001.1:ENST00000527702.5:ENST00000534582.5:ENST00000529235.5:ENST00000533713.5:ENST00000533618.5:ENST00000533195.5:ENST00000530132.5:ENST00000533532.5:ENST00000263574.9:ENST00000345598.9:ENST00000278756.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	20	2	4.16881	4.270085	4.37136	0.00574776	0.00345135	0.0681402	0.0517761
chr15	22818887	22818987	5976406	0	+	0.58	(0.57,1]	chr15	568378	2	SS3_PROX	SS3_PROX:INTRON	NIPA1	ENSG00000170113.16	ENST00000437912.6:ENST00000561183.5:ENST00000560069.5:ENST00000337435.9:ENST00000559448.5:ENST00000557930.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	20	2	4.16881	4.270085	4.37136	0.00574776	0.00345135	0.0681402	0.0517761
chr17	38893502	38893602	6606642	0	+	0.66	(0.57,1]	chr17	643201	26	INTRON	INTRON	LASP1	ENSG00000002834.18	ENST00000433206.6:ENST00000585841.5:ENST00000318008.11:ENST00000443937.7:ENST00000584106.1:ENST00000435347.7:ENST00000419929.1:ENST00000581485.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	20	2	4.16881	4.270085	4.37136	0.00574776	0.00345135	0.0681402	0.0517761
chr22	32412156	32412247	7579948	0	-	0.593407	(0.57,1]	chr22	775747	1	UTR5	UTR5:EXON_MRNA	RTCB	ENSG00000100220.12	ENST00000216038.6:ENST00000487704.5:ENST00000463455.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	20	2	4.16881	4.270085	4.37136	0.00574776	0.00345135	0.0681402	0.0517761
chr7	107197609	107197707	3378657	0	+	0.479592	(0.476,0.515]	chr7	316368	6	INTRON	INTRON	HBP1	ENSG00000105856.14	ENST00000468410.5:ENST00000222574.9:ENST00000485846.5:ENST00000463202.5:ENST00000461963.1:ENST00000607681.1:ENST00000463790.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	72	2	3.04097	4.26982	5.49867	7.0601e-4	4.28561e-4	0.0241881	0.0189958
chr7	105150444	105150544	3601506	0	-	0.42	(0.408,0.44]	chr7	336102	34	INTRON	INTRON	SRPK2	ENSG00000135250.17	ENST00000393651.8:ENST00000357311.7:ENST00000485455.1:ENST00000489828.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	102	2	2.8501	4.26968	5.68926	2.2853e-4	1.55358e-4	0.0138641	0.0106835
chr1	12000826	12000922	26653	0	+	0.458333	(0.44,0.476]	chr1	3121	6	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	MFN2	ENSG00000116688.18	ENST00000444836.5:ENST00000674817.1:ENST00000675053.1:ENST00000675298.1:ENST00000675817.1:ENST00000675194.1:ENST00000674548.1:ENST00000675959.1:ENST00000675872.1:ENST00000676426.1:ENST00000674658.1:ENST00000674910.1:ENST00000675231.1:ENST00000235329.10:ENST00000676293.1:ENST00000675919.1:ENST00000675987.1:ENST00000675512.1:ENST00000675113.1:ENST00000675483.1:ENST00000675528.1:ENST00000675404.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	26	2	4.1054	4.269585	4.43377	0.0220205	0.0162803	0.123836	0.101453
chr10	124718867	124718966	4711846	0	-	0.464646	(0.44,0.476]	chr10	434781	116	INTRON	INTRON	FAM53B	ENSG00000189319.14	ENST00000337318.8:ENST00000392754.7:ENST00000280780.6	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.1054	4.269585	4.43377	0.0220205	0.0162803	0.123836	0.101453
chr16	14578330	14578430	6449311	0	-	0.45	(0.44,0.476]	chr16	621256	4	SS5_PROX	SS5_PROX:INTRON	PARN	ENSG00000140694.17	ENST00000651865.1:ENST00000437198.7:ENST00000651348.1:ENST00000650990.1:ENST00000651760.1:ENST00000652541.1:ENST00000652727.1:ENST00000652066.1:ENST00000651300.1:ENST00000420015.6:ENST00000652051.1:ENST00000341484.11:ENST00000539279.5:ENST00000651049.1:ENST00000650960.1:ENST00000651634.1:ENST00000564113.6:ENST00000652411.1:ENST00000652501.1:ENST00000651027.1:ENST00000651913.1:ENST00000563641.6:ENST00000569444.5:ENST00000563697.5:ENST00000562715.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	26	2	4.1054	4.269585	4.43377	0.0220205	0.0162803	0.123836	0.101453
chr16	16066157	16066257	6308936	0	+	0.47	(0.44,0.476]	chr16	603578	87	INTRON	INTRON	ABCC1	ENSG00000103222.20	ENST00000678422.1:ENST00000677164.1:ENST00000399408.7:ENST00000572882.3:ENST00000399410.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	26	2	4.1054	4.269585	4.43377	0.0220205	0.0162803	0.123836	0.101453
chr19	9419681	9419777	7132402	0	-	0.458333	(0.44,0.476]	chr19	718741	5	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ZNF266	ENSG00000174652.20	ENST00000592904.7:ENST00000588221.5:ENST00000588933.5:ENST00000648978.1:ENST00000590306.5:ENST00000651268.1:ENST00000592292.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	26	2	4.1054	4.269585	4.43377	0.0220205	0.0162803	0.123836	0.101453
chr19	23767929	23768029	7042478	0	+	0.47	(0.44,0.476]	chr19	702194	44	INTRON	INTRON	RPSAP58	ENSG00000288920.1	ENST00000471224.5:ENST00000692590.1:ENST00000475499.2:ENST00000686829.1:ENST00000689525.1:ENST00000691397.1:ENST00000688405.1:ENST00000692739.1:ENST00000687994.1:ENST00000484897.4:ENST00000685013.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	26	2	4.1054	4.269585	4.43377	0.0220205	0.0162803	0.123836	0.101453
chr19	47265920	47266015	7084799	0	+	0.442105	(0.44,0.476]	chr19	708860	6	INTRON	INTRON	CCDC9	ENSG00000105321.14	ENST00000643617.1:ENST00000221922.11	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.1054	4.269585	4.43377	0.0220205	0.0162803	0.123836	0.101453
chr2	11789641	11789738	694388	0	+	0.463918	(0.44,0.476]	chr2	81385	8	INTRON	INTRON	LPIN1	ENSG00000134324.12	ENST00000449576.6:ENST00000425416.6:ENST00000396097.5:ENST00000396099.5:ENST00000256720.6:ENST00000674199.1:ENST00000404113.6:ENST00000464953.2:ENST00000454151.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	26	2	4.1054	4.269585	4.43377	0.0220205	0.0162803	0.123836	0.101453
chr22	17624612	17624712	7547783	0	-	0.47	(0.44,0.476]	chr22	771462	47	INTRON	INTRON	ATP6V1E1	ENSG00000131100.13	ENST00000253413.10:ENST00000399796.6:ENST00000399798.6:ENST00000413576.1:ENST00000478963.5:ENST00000460085.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	26	2	4.1054	4.269585	4.43377	0.0220205	0.0162803	0.123836	0.101453
chr22	50372650	50372749	7544483	0	+	0.444444	(0.44,0.476]	chr22	771021	1	INTRON	INTRON	PPP6R2	ENSG00000100239.16	ENST00000359139.7:ENST00000395741.7:ENST00000612753.5:ENST00000395744.7:ENST00000216061.9	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.1054	4.269585	4.43377	0.0220205	0.0162803	0.123836	0.101453
chr3	47908837	47908937	1685684	0	-	0.45	(0.44,0.476]	chr3	172208	4	SS5_PROX	SS5_PROX:INTRON	MAP4	ENSG00000047849.22	ENST00000429422.5:ENST00000683076.1:ENST00000395734.7:ENST00000426837.6:ENST00000360240.10:ENST00000383736.3:ENST00000482752.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	26	2	4.1054	4.269585	4.43377	0.0220205	0.0162803	0.123836	0.101453
chr6	35300138	35300238	2851745	0	+	0.46	(0.44,0.476]	chr6	269431	18	INTRON	INTRON	DEF6	ENSG00000023892.11	ENST00000316637.7	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.1054	4.269585	4.43377	0.0220205	0.0162803	0.123836	0.101453
chrX	16796284	16796384	7626377	0	+	0.46	(0.44,0.476]	chrX	780926	93	INTRON	INTRON	TXLNG	ENSG00000086712.13	ENST00000398155.4:ENST00000380122.10	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.1054	4.269585	4.43377	0.0220205	0.0162803	0.123836	0.101453
chr5	139649607	139649706	2501211	0	+	0.727273	(0.57,1]	chr5	239070	2	INTRON	INTRON	CXXC5	ENSG00000171604.12	ENST00000502295.1:ENST00000504944.1:ENST00000302517.8:ENST00000507139.5:ENST00000504844.1:ENST00000502336.5:ENST00000520967.1:ENST00000511048.1	protein_coding	protein_coding	protein_coding	protein_coding	1	39	2	3.8646	4.269515	4.67443	8.07515e-4	8.0672e-5	0.0258804	0.00804467
chr7	74696474	74696574	3335638	0	+	0.49	(0.476,0.515]	chr7	310357	50	INTRON	INTRON	GTF2I	ENSG00000263001.8	ENST00000650807.1:ENST00000690345.1:ENST00000573035.6:ENST00000614986.4:ENST00000620879.4:ENST00000621734.4:ENST00000443166.5:ENST00000432143.2	protein_coding	protein_coding	protein_coding	protein_coding	1	58	2	2.82673	4.26944	5.71215	0.0134403	5.54639e-5	0.0946278	0.00609037
chr19	34450664	34450764	7053350	0	+	0.18	[0,0.28]	chr19	703536	3	SS5_PROX	SS5_PROX:INTRON	UBA2	ENSG00000126261.13	ENST00000586313.1:ENST00000246548.9:ENST00000439527.6:ENST00000591016.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	152	2	2.20773	4.26941	6.33109	0.002385	1.74802e-4	0.0449918	0.01216
chr12	49149684	49149782	5131558	0	+	0.346939	(0.32,0.35]	chr12	483830	22	EXON_LNCRNA	EXON_LNCRNA:INTRON	ENSG00000258017	ENSG00000258017.3	ENST00000656133.1:ENST00000667827.1	lncRNA	lncRNA	lncRNA	lncRNA	0	29	2	3.77344	4.2692250000000005	4.76501	0.0596635	0.0114287	0.189982	0.0886611
chr13	41262581	41262676	5578538	0	-	0.336842	(0.32,0.35]	chr13	533298	1	SS3_PROX	SS3_PROX:INTRON	MTRF1	ENSG00000120662.16	ENST00000379480.9:ENST00000379477.5:ENST00000239852.10:ENST00000452359.5:ENST00000497679.6:ENST00000430347.3:ENST00000492827.1:ENST00000498245.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	29	2	3.77344	4.2692250000000005	4.76501	0.0596635	0.0114287	0.189982	0.0886611
chr4	2348478	2348577	2099027	0	-	0.333333	(0.32,0.35]	chr4	207724	51	INTRON	INTRON	ZFYVE28	ENSG00000159733.14	ENST00000290974.7:ENST00000511071.5:ENST00000515312.5:ENST00000515169.5:ENST00000509171.5:ENST00000503000.1:ENST00000508184.5:ENST00000504743.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	29	2	3.77344	4.2692250000000005	4.76501	0.0596635	0.0114287	0.189982	0.0886611
chr18	9483631	9483731	6871215	0	+	0.38	(0.378,0.408]	chr18	680716	38	INTRON	INTRON	RALBP1	ENSG00000017797.13	ENST00000019317.8:ENST00000585015.6:ENST00000383432.8:ENST00000609094.2:ENST00000458039.3:ENST00000577221.1	protein_coding	protein_coding	protein_coding	protein_coding	4	100	2	2.43777	4.26909	6.10041	0.00144299	4.33573e-5	0.034834	0.00561811
chr6	4920712	4920812	2792308	0	+	0.51	(0.476,0.515]	chr6	263614	280	INTRON	INTRON	CDYL	ENSG00000153046.18	ENST00000328908.9:ENST00000440139.5:ENST00000397588.8:ENST00000472453.5:ENST00000449732.6:ENST00000343762.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	58	2	3.41728	4.269	5.12072	0.00165726	8.42139e-4	0.0369207	0.0263691
chr11	69672517	69672616	4975061	0	-	0.30303	(0.28,0.32]	chr11	469839	8	EXON_MRNA	EXON_MRNA:INTRON	LTO1	ENSG00000149716.13	ENST00000538554.6:ENST00000569105.5:ENST00000279147.9:ENST00000536870.5:ENST00000544096.5:ENST00000535657.5:ENST00000535542.5:ENST00000543863.1:ENST00000543562.1:ENST00000539414.5:ENST00000441922.6:ENST00000542341.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	67	2	3.00395	4.268985	5.53402	0.0101329	4.0843e-4	0.0850389	0.0181306
chr9	137627539	137627639	4223557	0	+	0.67	(0.57,1]	chr9	388152	71	INTRON	INTRON	EHMT1	ENSG00000181090.21	ENST00000462484.5:ENST00000371394.6:ENST00000630754.2:ENST00000460843.6:ENST00000626216.2:ENST00000637593.1:ENST00000629335.2:ENST00000637335.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	36	2	3.48337	4.26893	5.05449	6.20854e-4	1.79828e-4	0.0223951	0.0121697
chr1	11908271	11908367	25916	0	+	0.333333	(0.32,0.35]	chr1	2931	1	EXON_LNCRNA	EXON_LNCRNA	ENSG00000285646	ENSG00000285646.2	ENST00000661075.1:ENST00000649268.2:ENST00000650448.1:ENST00000666735.1:ENST00000660618.1:ENST00000658167.1	lncRNA	lncRNA	lncRNA	lncRNA	5	283	2	3.91706	4.26876	4.62046	2.90142e-6	9.45306e-7	0.00109346	6.04708e-4
chr1	109341813	109341913	520446	0	-	0.4	(0.378,0.408]	chr1	61144	4	SS5_PROX	SS5_PROX:INTRON	SORT1	ENSG00000134243.12	ENST00000538502.5:ENST00000256637.8	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.21563	4.268685	4.32174	0.0315429	0.0132362	0.13151	0.0999551
chr10	35509128	35509228	4426238	0	+	0.39	(0.378,0.408]	chr10	407931	72	INTRON	INTRON	CCNY	ENSG00000108100.18	ENST00000374706.5:ENST00000490012.6:ENST00000493157.6:ENST00000374704.8:ENST00000265375.13:ENST00000339497.7:ENST00000492478.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	26	2	4.21563	4.268685	4.32174	0.0315429	0.0132362	0.13151	0.0999551
chr11	5397375	5397475	4897193	0	-	0.39	(0.378,0.408]	chr11	459187	501	INTRON	INTRON	HBG2:ENSG00000239920:HBE1:OR51B5	ENSG00000196565.15:ENSG00000239920.2:ENSG00000213931.7:ENSG00000167355.8	ENST00000380252.6:ENST00000380259.7:ENST00000292896.3:ENST00000380237.5:ENST00000420726.6:ENST00000420465.6:ENST00000415970.6:ENST00000418729.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:nonsense_mediated_decay:processed_transcript	0	26	2	4.21563	4.268685	4.32174	0.0315429	0.0132362	0.13151	0.0999551
chr11	117251842	117251942	4869629	0	+	0.38	(0.378,0.408]	chr11	454512	45	INTRON	INTRON	RNF214	ENSG00000167257.11	ENST00000300650.9:ENST00000531452.5:ENST00000531287.5:ENST00000530849.1	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.21563	4.268685	4.32174	0.0315429	0.0132362	0.13151	0.0999551
chr12	55981720	55981819	5144941	0	+	0.393939	(0.378,0.408]	chr12	485924	4	INTRON	INTRON	RAB5B	ENSG00000111540.16	ENST00000553116.5:ENST00000549505.5:ENST00000360299.10:ENST00000546810.1:ENST00000548068.5:ENST00000549915.5:ENST00000448789.2:ENST00000551459.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	26	2	4.21563	4.268685	4.32174	0.0315429	0.0132362	0.13151	0.0999551
chr14	71347614	71347714	5779738	0	+	0.38	(0.378,0.408]	chr14	547500	257	INTRON	INTRON	SIPA1L1	ENSG00000197555.10	ENST00000555989.5:ENST00000553453.5:ENST00000556408.5:ENST00000381232.8:ENST00000554362.5:ENST00000556780.5:ENST00000554126.5:ENST00000555652.5:ENST00000557151.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	26	2	4.21563	4.268685	4.32174	0.0315429	0.0132362	0.13151	0.0999551
chr16	30328590	30328690	6473303	0	-	0.38	(0.378,0.408]	chr16	625713	223	INTRON	INTRON	SMG1P5	ENSG00000183604.15	ENST00000529428.5:ENST00000411546.4:ENST00000691460.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	26	2	4.21563	4.268685	4.32174	0.0315429	0.0132362	0.13151	0.0999551
chr17	22197503	22197603	6579641	0	+	0.4	(0.378,0.408]	chr17	639568	139	INTRON	INTRON	UBBP4	ENSG00000263563.7	ENST00000648259.1:ENST00000688301.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	26	2	4.21563	4.268685	4.32174	0.0315429	0.0132362	0.13151	0.0999551
chr19	19006546	19006646	7153537	0	-	0.4	(0.378,0.408]	chr19	723036	15	INTRON	INTRON	SUGP2	ENSG00000064607.17	ENST00000594773.5:ENST00000337018.10:ENST00000452918.7:ENST00000330854.15:ENST00000601879.5:ENST00000600239.5:ENST00000600377.1:ENST00000598240.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	26	2	4.21563	4.268685	4.32174	0.0315429	0.0132362	0.13151	0.0999551
chr2	108573195	108573295	846234	0	+	0.4	(0.378,0.408]	chr2	94665	20	INTRON	INTRON	LIMS1	ENSG00000169756.17	ENST00000695516.1:ENST00000544547.6:ENST00000695517.1:ENST00000695518.1	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.21563	4.268685	4.32174	0.0315429	0.0132362	0.13151	0.0999551
chr22	24557990	24558086	7488397	0	+	0.385417	(0.378,0.408]	chr22	764096	3	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	SNRPD3:ENSG00000286070	ENSG00000100028.12:ENSG00000286070.2	ENST00000468770.1:ENST00000215829.8:ENST00000652248.1:ENST00000402849.5:ENST00000404603.5:ENST00000439775.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	26	2	4.21563	4.268685	4.32174	0.0315429	0.0132362	0.13151	0.0999551
chr3	121518378	121518477	1798174	0	-	0.40404	(0.378,0.408]	chr3	180534	60	INTRON	INTRON	POLQ	ENSG00000051341.15	ENST00000264233.6	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.21563	4.268685	4.32174	0.0315429	0.0132362	0.13151	0.0999551
chr4	102328987	102329087	2210444	0	-	0.4	(0.378,0.408]	chr4	216506	36	INTRON	INTRON	SLC39A8	ENSG00000138821.14	ENST00000424970.7:ENST00000682549.1:ENST00000356736.5:ENST00000394833.6:ENST00000683401.1:ENST00000682932.1:ENST00000683173.1:ENST00000682227.1:ENST00000683412.1:ENST00000684289.1:ENST00000683462.1:ENST00000682243.1:ENST00000683916.1:ENST00000683706.1:ENST00000684386.1:ENST00000683634.1:ENST00000683221.1:ENST00000510255.5:ENST00000514000.5:ENST00000512657.5:ENST00000502903.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	26	2	4.21563	4.268685	4.32174	0.0315429	0.0132362	0.13151	0.0999551
chr4	109503034	109503134	2019268	0	+	0.38	(0.378,0.408]	chr4	200784	78	INTRON	INTRON	SEC24B	ENSG00000138802.11	ENST00000504968.6:ENST00000399100.6:ENST00000265175.5	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.21563	4.268685	4.32174	0.0315429	0.0132362	0.13151	0.0999551
chr5	168518062	168518162	2540749	0	+	0.4	(0.378,0.408]	chr5	242521	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	RARS1	ENSG00000113643.9	ENST00000231572.8:ENST00000520013.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	26	2	4.21563	4.268685	4.32174	0.0315429	0.0132362	0.13151	0.0999551
chr19	48852914	48853003	7199667	0	-	0.449438	(0.44,0.476]	chr19	729991	2	INTRON	INTRON	PLEKHA4	ENSG00000105559.12	ENST00000263265.11:ENST00000355496.9:ENST00000595867.1:ENST00000594195.1	protein_coding	protein_coding	protein_coding	protein_coding	1	58	2	3.35227	4.26854	5.18481	0.0022005699999999998	6.21872e-4	0.0417893	0.0223951
chr9	131397457	131397557	4217003	0	+	0.25	[0,0.28]	chr9	386720	28	INTRON	INTRON	PRRC2B	ENSG00000288701.1	ENST00000682525.1:ENST00000684596.1:ENST00000683519.1:ENST00000682501.1	protein_coding	protein_coding	protein_coding	protein_coding	2	101	2	2.74694	4.26843	5.78992	0.00547306	2.85302e-4	0.0648867	0.0150568
chr7	10775682	10775782	3484537	0	-	0.26	[0,0.28]	chr7	325772	2138	INTRON	INTRON	MGC4859	ENSG00000283117.1	ENST00000634803.1	lncRNA	lncRNA	lncRNA	lncRNA	1	67	2	3.3753	4.2683	5.1613	0.00866441	0.00242466	0.0787025	0.0454587
chr16	122611	122710	6425605	0	-	0.40404	(0.378,0.408]	chr16	617369	30	INTRON	INTRON	NPRL3	ENSG00000103148.17	ENST00000611875.5:ENST00000622194.4:ENST00000621703.4:ENST00000399953.7:ENST00000457916.5:ENST00000483663.5:ENST00000422814.5:ENST00000468260.5:ENST00000456528.5:ENST00000419636.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	73	2	2.78867	4.26827	5.74787	0.00226991	2.21531e-4	0.0437013	0.0136064
chr12	64423544	64423644	5153085	0	+	0.49	(0.476,0.515]	chr12	487775	3	SS5_PROX	SS5_PROX:INTRON	XPOT	ENSG00000184575.12	ENST00000332707.10:ENST00000542958.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	73	2	3.17628	4.268115	5.35995	7.54256e-4	3.6008e-4	0.0251179	0.0169207
chr2	39760930	39761030	1104559	0	-	0.3	(0.28,0.32]	chr2	118546	2	SS5_PROX	SS5_PROX:INTRON	THUMPD2	ENSG00000138050.15	ENST00000460072.5:ENST00000505747.6:ENST00000378727.8:ENST00000530522.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	67	2	3.04485	4.2677249999999995	5.4906	0.00894006	4.89126e-4	0.0799922	0.0199693
chr1	153844141	153844241	556977	0	-	0.42	(0.408,0.44]	chr1	65983	154	INTRON	INTRON	GATAD2B	ENSG00000143614.10	ENST00000368655.5:ENST00000634544.1:ENST00000634408.1:ENST00000634401.1:ENST00000634791.1:ENST00000636014.1:ENST00000637331.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	26	2	4.00385	4.267365	4.53088	0.0454568	0.00669275	0.149888	0.0738715
chr1	158624863	158624961	569979	0	-	0.438776	(0.408,0.44]	chr1	68754	13	INTRON	INTRON	SPTA1	ENSG00000163554.15	ENST00000643759.2:ENST00000461624.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	26	2	4.00385	4.267365	4.53088	0.0454568	0.00669275	0.149888	0.0738715
chr16	2588792	2588892	6279389	0	+	0.41	(0.408,0.44]	chr16	600689	15	INTRON	INTRON	PDPK1	ENSG00000140992.19	ENST00000441549.7:ENST00000268673.11:ENST00000342085.9:ENST00000389224.7	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.00385	4.267365	4.53088	0.0454568	0.00669275	0.149888	0.0738715
chr16	75451068	75451168	6529388	0	-	0.41	(0.408,0.44]	chr16	632369	30	INTRON	INTRON	TMEM170A	ENSG00000166822.13	ENST00000357613.8:ENST00000561878.2:ENST00000568559.1:ENST00000569540.5:ENST00000567796.1:ENST00000566980.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	26	2	4.00385	4.267365	4.53088	0.0454568	0.00669275	0.149888	0.0738715
chr19	12164365	12164465	7021378	0	+	0.44	(0.408,0.44]	chr19	698035	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	ZNF136	ENSG00000196646.12	ENST00000439995.5:ENST00000425827.5:ENST00000652580.1:ENST00000343979.6:ENST00000418338.1	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.00385	4.267365	4.53088	0.0454568	0.00669275	0.149888	0.0738715
chr2	121443141	121443241	1220297	0	-	0.42	(0.408,0.44]	chr2	129918	126	INTRON	INTRON	CLASP1	ENSG00000074054.20	ENST00000263710.8:ENST00000397587.7:ENST00000541377.5:ENST00000409078.8:ENST00000455322.6:ENST00000452274.6	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.00385	4.267365	4.53088	0.0454568	0.00669275	0.149888	0.0738715
chr2	135861319	135861417	1233733	0	-	0.418367	(0.408,0.44]	chr2	131305	15	INTRON	INTRON	MCM6	ENSG00000076003.5	ENST00000264156.3:ENST00000492091.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	26	2	4.00385	4.267365	4.53088	0.0454568	0.00669275	0.149888	0.0738715
chr2	241663754	241663854	1055740	0	+	0.44	(0.408,0.44]	chr2	112521	41	INTRON	INTRON	ATG4B	ENSG00000168397.17	ENST00000405546.7:ENST00000402096.5:ENST00000494465.5:ENST00000404914.8:ENST00000482507.5:ENST00000400771.7:ENST00000344376.9:ENST00000429899.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	26	2	4.00385	4.267365	4.53088	0.0454568	0.00669275	0.149888	0.0738715
chr21	14728959	14729053	7429871	0	-	0.43617	(0.408,0.44]	chr21	757852	7	EXON_LNCRNA	EXON_LNCRNA:INTRON	ENSG00000232884	ENSG00000232884.10	ENST00000673788.1:ENST00000660333.1:ENST00000660772.1	lncRNA	lncRNA	lncRNA	lncRNA	0	26	2	4.00385	4.267365	4.53088	0.0454568	0.00669275	0.149888	0.0738715
chr3	37844640	37844740	1658248	0	-	0.41	(0.408,0.44]	chr3	170115	95	INTRON	INTRON	ITGA9-AS1	ENSG00000235257.10	ENST00000653023.1:ENST00000663634.1:ENST00000663533.1:ENST00000653285.1:ENST00000655095.1:ENST00000660790.1:ENST00000420870.6:ENST00000670835.1:ENST00000438136.5:ENST00000450990.5:ENST00000657484.1:ENST00000660349.1:ENST00000660845.1:ENST00000445429.5:ENST00000457661.5:ENST00000630010.2:ENST00000629314.2:ENST00000614028.4:ENST00000630986.2:ENST00000429532.5:ENST00000430620.3:ENST00000630589.2:ENST00000366441.4:ENST00000686387.1:ENST00000684787.1	lncRNA	lncRNA	lncRNA	lncRNA	0	26	2	4.00385	4.267365	4.53088	0.0454568	0.00669275	0.149888	0.0738715
chr4	1998180	1998280	2095942	0	-	0.44	(0.408,0.44]	chr4	207403	57	INTRON	INTRON	NELFA	ENSG00000185049.16	ENST00000542778.5:ENST00000382882.9:ENST00000333877.8:ENST00000431323.6:ENST00000455762.5:ENST00000421397.5:ENST00000411649.3:ENST00000443203.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	26	2	4.00385	4.267365	4.53088	0.0454568	0.00669275	0.149888	0.0738715
chr9	120576727	120576827	4333863	0	-	0.44	(0.408,0.44]	chr9	398171	43	INTRON	INTRON	CDK5RAP2	ENSG00000136861.19	ENST00000349780.9:ENST00000360190.8:ENST00000687279.1:ENST00000687633.1:ENST00000690814.1:ENST00000693714.1:ENST00000693386.1:ENST00000686376.1:ENST00000692155.1:ENST00000690646.1:ENST00000693433.1:ENST00000473282.6:ENST00000480112.5:ENST00000685866.1:ENST00000689688.1:ENST00000416449.6:ENST00000691504.1:ENST00000360822.8:ENST00000693728.1:ENST00000690474.1:ENST00000693137.1:ENST00000481266.2:ENST00000472883.2:ENST00000491334.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	26	2	4.00385	4.267365	4.53088	0.0454568	0.00669275	0.149888	0.0738715
chr4	48858553	48858651	1958500	0	+	0.469388	(0.44,0.476]	chr4	196259	8	INTRON	INTRON	OCIAD1	ENSG00000109180.15	ENST00000509122.5:ENST00000396448.6:ENST00000381473.7:ENST00000264312.12:ENST00000444354.6:ENST00000506801.5:ENST00000425583.6:ENST00000508293.5:ENST00000513391.2:ENST00000508329.1:ENST00000502972.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	72	2	2.69297	4.26722	5.84147	0.00333494	1.03947e-4	0.0528877	0.00915599
chr1	30948247	30948346	411697	0	-	0.30303	(0.28,0.32]	chr1	49633	24	INTRON	INTRON	PUM1	ENSG00000134644.16	ENST00000426105.7:ENST00000373747.7:ENST00000257075.9:ENST00000424085.6:ENST00000525843.5:ENST00000440538.6:ENST00000498419.5:ENST00000373741.8:ENST00000373742.6:ENST00000529846.5:ENST00000525997.1:ENST00000527498.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	63	2	3.54514	4.26693	4.98872	0.00838468	0.00100603	0.0774402	0.0292285
chr9	135952383	135952482	4372479	0	-	0.626263	(0.57,1]	chr9	402541	41	INTRON	INTRON	UBAC1	ENSG00000130560.9	ENST00000371756.4:ENST00000478485.1:ENST00000486258.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	36	2	3.5592	4.26689	4.97458	4.21089e-4	2.67728e-4	0.0183576	0.0149989
chr12	49382363	49382463	5133097	0	+	0.33	(0.32,0.35]	chr12	483963	107	INTRON	INTRON	SPATS2	ENSG00000123352.18	ENST00000550997.5:ENST00000549538.5:ENST00000549412.5:ENST00000550643.5:ENST00000548654.5:ENST00000548710.5:ENST00000549179.5:ENST00000548377.5:ENST00000549298.5:ENST00000552918.6:ENST00000549375.5:ENST00000553127.5:ENST00000321898.10:ENST00000551540.5:ENST00000548777.5:ENST00000552171.1:ENST00000547865.5:ENST00000548388.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	28	2	3.91486	4.266875000000001	4.61889	0.0450361	0.0166646	0.163255	0.102621
chr19	42457675	42457774	7073529	0	+	0.333333	(0.32,0.35]	chr19	707234	66	INTRON	INTRON	LIPE-AS1	ENSG00000213904.10	ENST00000689053.1:ENST00000597203.1:ENST00000594624.6:ENST00000685574.1:ENST00000594688.1:ENST00000457234.2:ENST00000593740.2:ENST00000661814.1	lncRNA	lncRNA	lncRNA	lncRNA	0	28	2	3.91486	4.266875000000001	4.61889	0.0450361	0.0166646	0.163255	0.102621
chr6	42630151	42630251	2865732	0	+	0.35	(0.32,0.35]	chr6	271081	99	INTRON	INTRON	UBR2	ENSG00000024048.11	ENST00000372899.6:ENST00000372901.2	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	3.91486	4.266875000000001	4.61889	0.0450361	0.0166646	0.163255	0.102621
chr20	38421480	38421575	7342164	0	-	0.526316	(0.515,0.57]	chr20	748299	6	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SNHG17	ENSG00000196756.14	ENST00000654008.2:ENST00000658076.1:ENST00000662982.2:ENST00000667188.1:ENST00000456953.7:ENST00000654183.2:ENST00000663540.2:ENST00000651115.2:ENST00000667835.1:ENST00000660885.2:ENST00000662213.1:ENST00000665233.2:ENST00000666268.2:ENST00000665735.1:ENST00000660558.2:ENST00000691280.1:ENST00000658488.2:ENST00000688336.1:ENST00000668054.2:ENST00000690441.1:ENST00000655520.2:ENST00000687490.1:ENST00000664626.1:ENST00000658051.1:ENST00000668042.1:ENST00000686971.1:ENST00000663187.1:ENST00000669114.1:ENST00000653343.1:ENST00000666225.1:ENST00000659186.1:ENST00000671309.1:ENST00000669405.1:ENST00000666806.1:ENST00000657665.1:ENST00000667282.1:ENST00000655311.1:ENST00000657868.1:ENST00000663534.1:ENST00000658141.1:ENST00000689917.1:ENST00000664073.2:ENST00000653697.1:ENST00000656320.1:ENST00000686814.1:ENST00000417578.7:ENST00000654853.1:ENST00000665440.1:ENST00000659102.1:ENST00000436764.7:ENST00000668482.2:ENST00000671249.1:ENST00000655692.1:ENST00000662568.1:ENST00000659255.1:ENST00000665693.1:ENST00000693250.1:ENST00000691368.1:ENST00000693227.1:ENST00000690361.1:ENST00000670051.1:ENST00000667912.1:ENST00000693665.1:ENST00000665181.1:ENST00000687532.1:ENST00000691386.1:ENST00000693684.1:ENST00000666331.1:ENST00000669480.1:ENST00000658905.1:ENST00000661252.1:ENST00000669137.1:ENST00000688133.1:ENST00000689414.1:ENST00000691314.1:ENST00000669033.1:ENST00000686145.1:ENST00000653938.1:ENST00000663784.1:ENST00000665003.1:ENST00000659400.1:ENST00000653753.1:ENST00000449469.5:ENST00000654389.1:ENST00000657429.1:ENST00000667412.1:ENST00000654092.1:ENST00000653277.1:ENST00000663955.1:ENST00000664964.1:ENST00000658324.1:ENST00000656023.1:ENST00000692262.1:ENST00000414142.5:ENST00000659753.1:ENST00000670958.1:ENST00000657216.2:ENST00000664636.1:ENST00000657843.1:ENST00000660189.1:ENST00000660064.1:ENST00000655198.1:ENST00000662572.1:ENST00000423536.6:ENST00000658455.1:ENST00000666419.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	2	65	2	2.92115	4.266845	5.61254	0.00110258	1.10757e-4	0.03038	0.00945003
chr15	89589415	89589515	6097238	0	+	0.59	(0.57,1]	chr15	580289	31	INTRON	INTRON	ENSG00000259713:TICRR	ENSG00000259713.1:ENSG00000140534.14	ENST00000559041.1:ENST00000268138.12:ENST00000560985.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	1	36	2	3.40333	4.26677	5.13021	9.20604e-4	1.21664e-4	0.0278392	0.00992813
chr10	73598704	73598803	4651209	0	-	0.424242	(0.408,0.44]	chr10	428080	73	INTRON	INTRON	USP54	ENSG00000166348.20	ENST00000339859.8:ENST00000689425.1:ENST00000685297.1:ENST00000422491.7:ENST00000433394.1:ENST00000474929.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	26	2	4.10594	4.266535	4.42713	0.0219367	0.0173083	0.123836	0.104099
chr11	86951335	86951430	5015253	0	-	0.410526	(0.408,0.44]	chr11	473064	2	CDS	CDS:EXON_MRNA	FZD4	ENSG00000174804.4	ENST00000531380.2	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.10594	4.266535	4.42713	0.0219367	0.0173083	0.123836	0.104099
chr11	125595292	125595380	4882642	0	+	0.431818	(0.408,0.44]	chr11	456434	3	SS5_PROX	SS5_PROX:INTRON	STT3A	ENSG00000134910.14	ENST00000527606.5:ENST00000534472.5:ENST00000529196.5:ENST00000392708.9:ENST00000649491.1:ENST00000531491.5:ENST00000525652.5:ENST00000529886.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	26	2	4.10594	4.266535	4.42713	0.0219367	0.0173083	0.123836	0.104099
chr12	56999426	56999525	5336534	0	-	0.424242	(0.408,0.44]	chr12	510323	7	UTR3	UTR3:EXON_MRNA	ZBTB39	ENSG00000166860.3	ENST00000300101.3	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.10594	4.266535	4.42713	0.0219367	0.0173083	0.123836	0.104099
chr12	96280241	96280279	5394054	0	-	0.421053	(0.408,0.44]	chr12	514356	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	CDK17	ENSG00000059758.8	ENST00000261211.8	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.10594	4.266535	4.42713	0.0219367	0.0173083	0.123836	0.104099
chr13	48304839	48304936	5484011	0	+	0.412371	(0.408,0.44]	chr13	525440	4	INTRON	INTRON	RB1	ENSG00000139687.16	ENST00000646097.1:ENST00000650461.1:ENST00000267163.6:ENST00000525036.1:ENST00000467505.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	26	2	4.10594	4.266535	4.42713	0.0219367	0.0173083	0.123836	0.104099
chr15	84543371	84543469	6251097	0	-	0.418367	(0.408,0.44]	chr15	596575	7	INTRON	INTRON	UBE2Q2P1	ENSG00000189136.9	ENST00000354771.8:ENST00000339094.5:ENST00000561403.6:ENST00000558251.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	26	2	4.10594	4.266535	4.42713	0.0219367	0.0173083	0.123836	0.104099
chr16	12142533	12142632	6292990	0	+	0.424242	(0.408,0.44]	chr16	602439	69	INTRON	INTRON	SNX29	ENSG00000048471.14	ENST00000566228.6:ENST00000564791.5	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.10594	4.266535	4.42713	0.0219367	0.0173083	0.123836	0.104099
chr16	78606951	78607051	6397741	0	+	0.44	(0.408,0.44]	chr16	614815	322	INTRON	INTRON	WWOX	ENSG00000186153.18	ENST00000683929.1:ENST00000684632.1:ENST00000569332.5:ENST00000402655.6:ENST00000406884.6:ENST00000539474.6:ENST00000566780.6:ENST00000408984.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	26	2	4.10594	4.266535	4.42713	0.0219367	0.0173083	0.123836	0.104099
chr17	61825244	61825344	6808551	0	-	0.43	(0.408,0.44]	chr17	672605	161	INTRON	INTRON	BRIP1	ENSG00000136492.10	ENST00000259008.7:ENST00000682755.1:ENST00000682453.1:ENST00000683039.1:ENST00000682989.1:ENST00000682589.1:ENST00000683235.1:ENST00000682477.1:ENST00000684584.1:ENST00000577598.5:ENST00000682066.1:ENST00000584322.2:ENST00000683381.1:ENST00000579028.2:ENST00000682611.1:ENST00000683692.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	26	2	4.10594	4.266535	4.42713	0.0219367	0.0173083	0.123836	0.104099
chr19	32604824	32604924	7168887	0	-	0.41	(0.408,0.44]	chr19	724347	4	SS3_PROX	SS3_PROX:INTRON	ANKRD27	ENSG00000105186.16	ENST00000306065.9	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.10594	4.266535	4.42713	0.0219367	0.0173083	0.123836	0.104099
chr2	106149669	106149769	1201894	0	-	0.41	(0.408,0.44]	chr2	128429	38	INTRON	INTRON	UXS1	ENSG00000115652.15	ENST00000283148.12:ENST00000409501.7:ENST00000441952.5:ENST00000416298.5:ENST00000444193.5:ENST00000457835.5:ENST00000479621.5:ENST00000479774.5:ENST00000483426.5	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.10594	4.266535	4.42713	0.0219367	0.0173083	0.123836	0.104099
chr21	36409015	36409101	7404623	0	+	0.430233	(0.408,0.44]	chr21	754469	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CHAF1B	ENSG00000159259.8	ENST00000314103.6:ENST00000481458.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	26	2	4.10594	4.266535	4.42713	0.0219367	0.0173083	0.123836	0.104099
chr21	36851268	36851368	7460406	0	-	0.44	(0.408,0.44]	chr21	760114	836	INTRON	INTRON	HLCS	ENSG00000159267.17	ENST00000674895.3:ENST00000336648.8:ENST00000612277.4:ENST00000399120.5:ENST00000675307.1:ENST00000675057.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	26	2	4.10594	4.266535	4.42713	0.0219367	0.0173083	0.123836	0.104099
chr8	123261597	123261697	4041694	0	-	0.43	(0.408,0.44]	chr8	368617	40	INTRON	INTRON	ZHX1-C8orf76:ZHX1	ENSG00000259305.6:ENSG00000165156.15	ENST00000357082.8:ENST00000622816.2:ENST00000297857.3:ENST00000395571.8:ENST00000517516.1:ENST00000522655.5:ENST00000522595.5:ENST00000524267.5:ENST00000480132.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	26	2	4.10594	4.266535	4.42713	0.0219367	0.0173083	0.123836	0.104099
chr8	128075282	128075380	3862901	0	+	0.418367	(0.408,0.44]	chr8	355579	6	INTRON	INTRON	PVT1	ENSG00000249859.13	ENST00000667305.1:ENST00000690350.1:ENST00000653522.1:ENST00000661830.1:ENST00000657289.1:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000657211.1:ENST00000653845.1:ENST00000651587.1:ENST00000692980.1:ENST00000654324.1:ENST00000657693.1:ENST00000666080.1:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000662410.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000657356.1:ENST00000657449.1:ENST00000656402.1:ENST00000667714.1:ENST00000654105.1:ENST00000664995.1:ENST00000670714.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000668123.1:ENST00000666776.1:ENST00000659912.1:ENST00000670532.1:ENST00000523068.2:ENST00000671088.1:ENST00000663461.1:ENST00000513868.6:ENST00000692433.1:ENST00000523190.7:ENST00000685606.1:ENST00000690788.1:ENST00000685634.1:ENST00000653990.1:ENST00000655783.1:ENST00000656411.1:ENST00000664742.1:ENST00000655099.1:ENST00000662709.1:ENST00000512617.7:ENST00000660122.1:ENST00000666452.1:ENST00000659666.1:ENST00000659892.1:ENST00000521600.5:ENST00000522875.5:ENST00000653497.1:ENST00000668098.1:ENST00000659106.1:ENST00000666147.1:ENST00000658350.1:ENST00000656999.1:ENST00000671092.1:ENST00000653853.1:ENST00000652492.1:ENST00000658429.1:ENST00000660781.1:ENST00000660912.1:ENST00000650930.1:ENST00000663715.1:ENST00000652883.1:ENST00000657844.1:ENST00000660659.1:ENST00000661391.1:ENST00000660146.1:ENST00000671587.1:ENST00000658018.1:ENST00000666878.1:ENST00000652993.1:ENST00000658305.1:ENST00000656077.1:ENST00000666039.1:ENST00000668619.1:ENST00000668479.1:ENST00000660069.1:ENST00000658158.1:ENST00000652728.1:ENST00000653608.1:ENST00000669509.1:ENST00000522414.2:ENST00000670535.1:ENST00000670009.1:ENST00000668215.1:ENST00000668351.1:ENST00000657682.1:ENST00000657945.1:ENST00000658065.1:ENST00000655148.1:ENST00000666223.1:ENST00000666105.1:ENST00000668480.1	lncRNA	lncRNA	lncRNA	lncRNA	0	26	2	4.10594	4.266535	4.42713	0.0219367	0.0173083	0.123836	0.104099
chr9	132350324	132350421	4367122	0	-	0.412371	(0.408,0.44]	chr9	401508	5	INTRON	INTRON	SETX	ENSG00000107290.14	ENST00000224140.6	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.10594	4.266535	4.42713	0.0219367	0.0173083	0.123836	0.104099
chrX	24802091	24802191	7632801	0	+	0.44	(0.408,0.44]	chrX	781739	72	INTRON	INTRON	POLA1	ENSG00000101868.13	ENST00000672178.1:ENST00000379068.8:ENST00000379059.7:ENST00000611764.2:ENST00000480125.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	26	2	4.10594	4.266535	4.42713	0.0219367	0.0173083	0.123836	0.104099
chrX	120432848	120432947	7876117	0	-	0.444444	(0.44,0.476]	chrX	802095	10	INTRON	INTRON	LAMP2	ENSG00000005893.16	ENST00000200639.9:ENST00000434600.6:ENST00000486593.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	54	2	3.50584	4.2664349999999995	5.02703	0.00278015	8.66138e-4	0.0469265	0.0266729
chr2	241321763	241321860	1053667	0	+	0.247423	[0,0.28]	chr2	112202	11	INTRON	INTRON	SEPTIN2	ENSG00000168385.18	ENST00000391973.6:ENST00000428282.5:ENST00000492978.5:ENST00000360051.7:ENST00000407017.5:ENST00000445030.5:ENST00000428524.5:ENST00000469434.5:ENST00000616972.4:ENST00000495463.5:ENST00000482304.5:ENST00000475474.5:ENST00000401990.5:ENST00000469175.5:ENST00000407971.5:ENST00000461048.5:ENST00000457335.5:ENST00000436795.5:ENST00000494824.5:ENST00000411484.5:ENST00000462147.5:ENST00000434955.5:ENST00000466211.5:ENST00000391971.7:ENST00000402092.6:ENST00000484740.1:ENST00000473479.5:ENST00000464128.5:ENST00000441533.5:ENST00000467971.5:ENST00000425899.5:ENST00000443492.5:ENST00000437066.5:ENST00000429791.5:ENST00000420786.5:ENST00000475823.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	94	2	3.18349	4.266195	5.3489	0.00514751	6.16875e-4	0.062965	0.0223951
chr1	19103486	19103583	385642	0	-	0.484536	(0.476,0.515]	chr1	45699	15	INTRON	INTRON	UBR4	ENSG00000127481.15	ENST00000375254.8:ENST00000375224.1	protein_coding	protein_coding	protein_coding	protein_coding	1	55	2	3.62464	4.266125	4.90761	0.00386428	5.079e-4	0.0542786	0.0202328
chr5	1629350	1629443	2566256	0	-	0.473118	(0.44,0.476]	chr5	245815	10	EXON_LNCRNA	EXON_LNCRNA:SS3_PROX:INTRON	PDCD6P1	ENSG00000188002.11	ENST00000507841.5:ENST00000512335.5:ENST00000692393.1:ENST00000507290.5:ENST00000690809.1:ENST00000688433.1:ENST00000507505.5:ENST00000691115.1:ENST00000502273.7:ENST00000522848.5:ENST00000689007.1:ENST00000690916.1:ENST00000686018.1:ENST00000687772.1:ENST00000693722.1:ENST00000690945.1:ENST00000343123.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	1	54	2	3.08591	4.266055	5.4462	0.00481262	5.83686e-4	0.0638089	0.0223753
chr3	101457140	101457240	1758012	0	-	0.28	[0,0.28]	chr3	178323	390	INTRON	INTRON	SENP7	ENSG00000138468.16	ENST00000394095.7:ENST00000314261.11:ENST00000394094.6:ENST00000394091.5:ENST00000348610.3	protein_coding	protein_coding	protein_coding	protein_coding	1	66	2	3.13926	4.26574	5.39222	0.00563224	0.00453865	0.0678837	0.0595107
chr20	5546195	5546293	7311672	0	-	0.306122	(0.28,0.32]	chr20	744503	19	UTR3	UTR3:EXON_MRNA	GPCPD1	ENSG00000125772.14	ENST00000379019.7:ENST00000481038.5:ENST00000418646.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	83	2	2.97299	4.26572	5.55845	0.00141854	0.00126436	0.0340865	0.0329641
chr12	79930597	79930696	5376490	0	-	0.494949	(0.476,0.515]	chr12	512797	168	INTRON	INTRON	PPP1R12A	ENSG00000058272.19	ENST00000261207.9:ENST00000450142.7:ENST00000437004.6:ENST00000550107.5:ENST00000547330.5:ENST00000550510.5	protein_coding	protein_coding	protein_coding	protein_coding	3	86	2	2.48789	4.265465000000001	6.04304	0.00256502	3.44951e-5	0.0466761	0.00495154
chr16	71755268	71755366	6513918	0	-	0.55102	(0.515,0.57]	chr16	631122	10	INTRON	INTRON	AP1G1	ENSG00000166747.13	ENST00000299980.9:ENST00000569748.5:ENST00000393512.7:ENST00000565009.5:ENST00000565642.5:ENST00000568327.5:ENST00000566179.1:ENST00000569044.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	49	2	3.42644	4.26546	5.10448	0.00106731	0.0010345	0.0300133	0.029231300000000002
chr1	155964887	155964987	565068	0	-	0.34	(0.32,0.35]	chr1	67584	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ARHGEF2	ENSG00000116584.22	ENST00000313695.11:ENST00000361247.9:ENST00000477754.2:ENST00000673475.1:ENST00000462460.6:ENST00000696600.1:ENST00000696601.1:ENST00000313667.8:ENST00000470874.5:ENST00000471589.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	27	2	4.06299	4.265285	4.46758	0.0559439	0.0119306	0.165463	0.0962115
chr1	161369848	161369943	235058	0	+	0.336842	(0.32,0.35]	chr1	28307	3	INTRON	INTRON	ENSG00000288670	ENSG00000288670.1	ENST00000437833.2	lncRNA	lncRNA	lncRNA	lncRNA	0	27	2	4.06299	4.265285	4.46758	0.0559439	0.0119306	0.165463	0.0962115
chr11	96276791	96276891	5023704	0	-	0.34	(0.32,0.35]	chr11	473809	1829	INTRON	INTRON	MAML2	ENSG00000184384.14	ENST00000524717.6	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.06299	4.265285	4.46758	0.0559439	0.0119306	0.165463	0.0962115
chr13	51969546	51969641	5596489	0	-	0.347368	(0.32,0.35]	chr13	534960	5	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	ATP7B	ENSG00000123191.16	ENST00000242839.10:ENST00000344297.9:ENST00000674147.1:ENST00000448424.7:ENST00000634620.1:ENST00000400370.8:ENST00000634844.1:ENST00000673772.1:ENST00000634308.1:ENST00000418097.7:ENST00000400366.6:ENST00000635406.1:ENST00000482841.6:ENST00000483772.2:ENST00000673864.1:ENST00000673789.1:ENST00000674078.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	27	2	4.06299	4.265285	4.46758	0.0559439	0.0119306	0.165463	0.0962115
chr15	60390718	60390817	6195261	0	-	0.323232	(0.32,0.35]	chr15	590340	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ANXA2	ENSG00000182718.18	ENST00000396024.7:ENST00000559818.6:ENST00000679109.1:ENST00000676687.1:ENST00000558169.6:ENST00000557906.6:ENST00000558558.6:ENST00000559113.6:ENST00000559780.6:ENST00000559956.6:ENST00000560468.6:ENST00000678870.1:ENST00000678061.1:ENST00000678450.1:ENST00000677968.1:ENST00000451270.7:ENST00000558985.6:ENST00000678796.1:ENST00000559647.2:ENST00000332680.8:ENST00000421017.6:ENST00000560466.5:ENST00000558132.5:ENST00000561022.5:ENST00000560367.6:ENST00000558503.6:ENST00000558998.5:ENST00000559559.5:ENST00000560165.5:ENST00000560389.5:ENST00000559725.5:ENST00000559350.5:ENST00000558986.5:ENST00000677258.1:ENST00000559467.5:ENST00000561445.5:ENST00000557937.5:ENST00000557904.5:ENST00000559370.5:ENST00000560546.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	27	2	4.06299	4.265285	4.46758	0.0559439	0.0119306	0.165463	0.0962115
chr17	63391660	63391757	6659270	0	+	0.329897	(0.32,0.35]	chr17	649693	23	EXON_MRNA	EXON_MRNA:INTRON	TANC2	ENSG00000170921.16	ENST00000689528.1:ENST00000424789.6:ENST00000389520.8:ENST00000583356.5:ENST00000583545.1:ENST00000581143.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	27	2	4.06299	4.265285	4.46758	0.0559439	0.0119306	0.165463	0.0962115
chr19	887090	887188	7110691	0	-	0.346939	(0.32,0.35]	chr19	714112	5	INTRON	INTRON	MED16	ENSG00000175221.16	ENST00000395808.7:ENST00000312090.10:ENST00000325464.6:ENST00000606248.5:ENST00000586017.5:ENST00000592943.5:ENST00000606828.2:ENST00000592373.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	27	2	4.06299	4.265285	4.46758	0.0559439	0.0119306	0.165463	0.0962115
chr19	7994512	7994611	7130699	0	-	0.343434	(0.32,0.35]	chr19	718387	23	INTRON	INTRON	ELAVL1	ENSG00000066044.15	ENST00000407627.7:ENST00000596459.5:ENST00000593807.1	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.06299	4.265285	4.46758	0.0559439	0.0119306	0.165463	0.0962115
chr2	11460135	11460233	1068889	0	-	0.346939	(0.32,0.35]	chr2	114156	14	INTRON	INTRON	E2F6	ENSG00000169016.17	ENST00000307236.8:ENST00000542100.5:ENST00000546212.2:ENST00000381525.8:ENST00000444832.5:ENST00000428221.5:ENST00000455198.5:ENST00000437573.5:ENST00000421117.1:ENST00000468775.1:ENST00000498701.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	27	2	4.06299	4.265285	4.46758	0.0559439	0.0119306	0.165463	0.0962115
chr2	46592199	46592286	1114045	0	-	0.333333	(0.32,0.35]	chr2	119458	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PIGF	ENSG00000151665.13	ENST00000281382.11:ENST00000306465.8:ENST00000420164.5:ENST00000412717.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	27	2	4.06299	4.265285	4.46758	0.0559439	0.0119306	0.165463	0.0962115
chr20	21351534	21351632	7248641	0	+	0.326531	(0.32,0.35]	chr20	735971	17	INTRON	INTRON	XRN2	ENSG00000088930.8	ENST00000377191.5	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.06299	4.265285	4.46758	0.0559439	0.0119306	0.165463	0.0962115
chr22	19830661	19830761	7555386	0	-	0.34	(0.32,0.35]	chr22	772443	89	INTRON	INTRON	GNB1L	ENSG00000185838.14	ENST00000329517.11:ENST00000403325.5:ENST00000405009.5:ENST00000460402.5:ENST00000481086.1:ENST00000453108.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	27	2	4.06299	4.265285	4.46758	0.0559439	0.0119306	0.165463	0.0962115
chr3	178761731	178761831	1875118	0	-	0.33	(0.32,0.35]	chr3	187500	42	INTRON	INTRON	KCNMB2-AS1	ENSG00000237978.6	ENST00000437488.5:ENST00000668466.1:ENST00000432385.5:ENST00000451742.5:ENST00000425330.1:ENST00000421498.1	lncRNA	lncRNA	lncRNA	lncRNA	0	27	2	4.06299	4.265285	4.46758	0.0559439	0.0119306	0.165463	0.0962115
chr5	54071329	54071429	2618519	0	-	0.35	(0.32,0.35]	chr5	248837	232	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	27	2	4.06299	4.265285	4.46758	0.0559439	0.0119306	0.165463	0.0962115
chr6	169631246	169631346	3266384	0	-	0.34	(0.32,0.35]	chr6	303118	172	INTRON	INTRON	WDR27	ENSG00000184465.16	ENST00000448612.6:ENST00000479310.5:ENST00000648472.1:ENST00000423258.5:ENST00000647790.1:ENST00000546525.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	27	2	4.06299	4.265285	4.46758	0.0559439	0.0119306	0.165463	0.0962115
chr9	137688328	137688427	4224179	0	+	0.343434	(0.32,0.35]	chr9	388206	26	INTRON	INTRON	EHMT1	ENSG00000181090.21	ENST00000462484.5:ENST00000371394.6:ENST00000630754.2:ENST00000460843.6:ENST00000626216.2:ENST00000629335.2:ENST00000637335.1:ENST00000636376.1:ENST00000637655.1:ENST00000636027.1:ENST00000492232.5:ENST00000460486.3:ENST00000636081.1:ENST00000637161.1:ENST00000629417.1:ENST00000637662.1:ENST00000636186.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	27	2	4.06299	4.265285	4.46758	0.0559439	0.0119306	0.165463	0.0962115
chr17	82917300	82917399	6695904	0	+	0.282828	(0.28,0.32]	chr17	655036	33	INTRON	INTRON	TBCD	ENSG00000141556.22	ENST00000682479.1:ENST00000682722.1:ENST00000684464.1:ENST00000684544.1:ENST00000681983.1:ENST00000684361.1:ENST00000683184.1:ENST00000683282.1:ENST00000684408.1:ENST00000355528.9:ENST00000683444.1:ENST00000684776.1:ENST00000683041.1:ENST00000684760.1:ENST00000684349.1:ENST00000682213.1:ENST00000539345.6:ENST00000684000.1:ENST00000684188.1:ENST00000684429.1:ENST00000682610.1:ENST00000683821.1:ENST00000682654.1:ENST00000576160.6:ENST00000571712.5:ENST00000576996.5:ENST00000683584.1:ENST00000682099.1:ENST00000684559.1:ENST00000576760.5:ENST00000683839.1:ENST00000574975.5:ENST00000572953.5:ENST00000571796.5:ENST00000682315.1:ENST00000574422.1:ENST00000576677.6:ENST00000571618.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	67	2	3.08462	4.265225	5.44583	0.0078976	5.8721e-4	0.076155	0.0220073
chr2	26065472	26065572	713413	0	+	0.28	[0,0.28]	chr2	82440	228	INTRON	INTRON	RAB10	ENSG00000084733.11	ENST00000264710.5:ENST00000495146.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	66	2	3.09587	4.265075	5.43428	0.00651565	0.00400834	0.0735232	0.0551303
chr3	6564309	6564409	1356885	0	+	0.26	[0,0.28]	chr3	142512	56	INTRON	INTRON	ENSG00000189229	ENSG00000189229.12	ENST00000433639.1:ENST00000655754.1:ENST00000653839.1:ENST00000662846.1:ENST00000414438.2:ENST00000658468.1:ENST00000669512.1:ENST00000667028.1:ENST00000655541.1:ENST00000668643.1:ENST00000671568.1:ENST00000671036.1:ENST00000669798.1:ENST00000655753.1:ENST00000655856.1:ENST00000658398.1:ENST00000661518.1:ENST00000661279.1:ENST00000655495.1:ENST00000663041.1:ENST00000659827.1:ENST00000667716.1:ENST00000662508.1:ENST00000668416.1:ENST00000658133.1:ENST00000342990.4:ENST00000660054.1:ENST00000671370.1	lncRNA	lncRNA	lncRNA	lncRNA	1	66	2	3.09587	4.265075	5.43428	0.00651565	0.00400834	0.0735232	0.0551303
chr10	24688354	24688454	4581591	0	-	0.38	(0.378,0.408]	chr10	422193	176	INTRON	INTRON	ARHGAP21	ENSG00000107863.20	ENST00000612832.4:ENST00000396432.7:ENST00000680286.1:ENST00000376410.7:ENST00000446003.5:ENST00000476499.1:ENST00000416305.1:ENST00000472150.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	26	2	4.10661	4.2650500000000005	4.42349	0.0399023	0.00992961	0.143072	0.0877296
chr15	68165104	68165204	6057072	0	+	0.4	(0.378,0.408]	chr15	576601	3	SS5_PROX	SS5_PROX:INTRON	PIAS1	ENSG00000033800.14	ENST00000249636.11:ENST00000545237.1	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.10661	4.2650500000000005	4.42349	0.0399023	0.00992961	0.143072	0.0877296
chr15	89310575	89310673	6096438	0	+	0.397959	(0.378,0.408]	chr15	580239	18	EXON_MRNA	EXON_MRNA:INTRON	FANCI	ENSG00000140525.20	ENST00000674831.1:ENST00000300027.12:ENST00000310775.12:ENST00000696717.1:ENST00000676003.1:ENST00000696718.1:ENST00000447611.6:ENST00000696719.1:ENST00000565522.5:ENST00000561894.1:ENST00000566895.5:ENST00000696721.1:ENST00000566615.1:ENST00000675352.1:ENST00000676110.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	26	2	4.10661	4.2650500000000005	4.42349	0.0399023	0.00992961	0.143072	0.0877296
chr16	47543349	47543449	6344128	0	+	0.38	(0.378,0.408]	chr16	608885	136	INTRON	INTRON	PHKB	ENSG00000102893.17	ENST00000566037.6:ENST00000566044.5:ENST00000299167.12:ENST00000696809.1:ENST00000323584.10:ENST00000565424.2:ENST00000567402.5:ENST00000570047.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	26	2	4.10661	4.2650500000000005	4.42349	0.0399023	0.00992961	0.143072	0.0877296
chr17	16105195	16105295	6734107	0	-	0.4	(0.378,0.408]	chr17	660631	30	INTRON	INTRON	NCOR1	ENSG00000141027.22	ENST00000268712.8:ENST00000395851.5:ENST00000395848.5:ENST00000583226.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	26	2	4.10661	4.2650500000000005	4.42349	0.0399023	0.00992961	0.143072	0.0877296
chr17	82756914	82757014	6694245	0	+	0.39	(0.378,0.408]	chr17	654816	3	INTRON	INTRON	TBCD	ENSG00000141556.22	ENST00000682479.1:ENST00000682722.1:ENST00000684464.1:ENST00000684544.1:ENST00000681983.1:ENST00000684361.1:ENST00000683184.1:ENST00000683282.1:ENST00000684408.1:ENST00000355528.9:ENST00000683444.1:ENST00000684776.1:ENST00000683041.1:ENST00000684760.1:ENST00000684349.1:ENST00000682213.1:ENST00000683009.1:ENST00000682921.1:ENST00000682107.1:ENST00000539345.6:ENST00000684000.1:ENST00000684188.1:ENST00000684429.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	26	2	4.10661	4.2650500000000005	4.42349	0.0399023	0.00992961	0.143072	0.0877296
chr19	2941976	2942074	7116853	0	-	0.408163	(0.378,0.408]	chr19	715534	18	INTRON	INTRON	ZNF77	ENSG00000175691.9	ENST00000314531.5:ENST00000588050.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	26	2	4.10661	4.2650500000000005	4.42349	0.0399023	0.00992961	0.143072	0.0877296
chr19	4020535	4020635	7001321	0	+	0.39	(0.378,0.408]	chr19	694408	14	INTRON	INTRON	PIAS4	ENSG00000105229.7	ENST00000262971.3:ENST00000599999.5:ENST00000600566.5:ENST00000596144.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	26	2	4.10661	4.2650500000000005	4.42349	0.0399023	0.00992961	0.143072	0.0877296
chr5	177136372	177136451	2553724	0	+	0.379747	(0.378,0.408]	chr5	243922	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NSD1	ENSG00000165671.22	ENST00000508896.6:ENST00000689549.1:ENST00000354179.9:ENST00000686993.1:ENST00000689326.1:ENST00000439151.7:ENST00000510954.6:ENST00000689345.1:ENST00000511258.6:ENST00000347982.9:ENST00000687453.1:ENST00000685206.1:ENST00000638627.3:ENST00000644863.2:ENST00000688613.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	26	2	4.10661	4.2650500000000005	4.42349	0.0399023	0.00992961	0.143072	0.0877296
chr8	53763634	53763734	3951912	0	-	0.38	(0.378,0.408]	chr8	362420	66	INTRON	INTRON	ATP6V1H	ENSG00000047249.18	ENST00000359530.7:ENST00000355221.7:ENST00000520188.5:ENST00000523343.1:ENST00000523899.5:ENST00000396774.6:ENST00000524164.5:ENST00000523426.1:ENST00000521707.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	26	2	4.10661	4.2650500000000005	4.42349	0.0399023	0.00992961	0.143072	0.0877296
chr9	131727809	131727909	4363787	0	-	0.38	(0.378,0.408]	chr9	401281	182	INTRON	INTRON	RAPGEF1	ENSG00000107263.19	ENST00000372195.5:ENST00000372189.7:ENST00000683357.1:ENST00000438647.3	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.10661	4.2650500000000005	4.42349	0.0399023	0.00992961	0.143072	0.0877296
chr15	89091166	89091264	6094592	0	+	0.428571	(0.408,0.44]	chr15	579963	4	INTRON	INTRON	ABHD2	ENSG00000140526.18	ENST00000569411.5:ENST00000569550.5:ENST00000564876.5:ENST00000565066.5:ENST00000565973.5:ENST00000352732.10:ENST00000565825.5:ENST00000562254.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	55	2	2.96007	4.2649	5.56973	0.00753901	3.81714e-4	0.0773151	0.0181283
chr1	8608579	8608678	371687	0	-	0.333333	(0.32,0.35]	chr1	43521	179	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000400907.6:ENST00000656437.1:ENST00000659924.1:ENST00000480342.5:ENST00000514428.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	27	2	4.16186	4.264704999999999	4.36755	0.0300552	0.026079	0.133676	0.129138
chr11	33134212	33134312	4940700	0	-	0.34	(0.32,0.35]	chr11	462854	254	INTRON	INTRON	CSTF3	ENSG00000176102.13	ENST00000323959.9:ENST00000524827.6	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.16186	4.264704999999999	4.36755	0.0300552	0.026079	0.133676	0.129138
chr12	28209232	28209332	5100458	0	+	0.33	(0.32,0.35]	chr12	481904	98	INTRON	INTRON	CCDC91	ENSG00000123106.11	ENST00000540794.5:ENST00000538586.5:ENST00000536154.5:ENST00000535520.5:ENST00000539107.5:ENST00000544649.5:ENST00000545336.5:ENST00000536442.6:ENST00000544780.5:ENST00000543534.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	27	2	4.16186	4.264704999999999	4.36755	0.0300552	0.026079	0.133676	0.129138
chr14	31339079	31339176	5859511	0	-	0.340206	(0.32,0.35]	chr14	556831	11	INTRON	INTRON	HEATR5A:ENSG00000203546	ENSG00000129493.15:ENSG00000203546.7	ENST00000543095.7:ENST00000538864.6:ENST00000550366.5:ENST00000549719.1:ENST00000549185.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	27	2	4.16186	4.264704999999999	4.36755	0.0300552	0.026079	0.133676	0.129138
chr19	38684717	38684817	7066099	0	+	0.34	(0.32,0.35]	chr19	705486	361	INTRON	INTRON	ACTN4	ENSG00000130402.13	ENST00000252699.7:ENST00000588618.5:ENST00000440400.2:ENST00000424234.7:ENST00000589528.1:ENST00000390009.7:ENST00000495553.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	27	2	4.16186	4.264704999999999	4.36755	0.0300552	0.026079	0.133676	0.129138
chr2	173956532	173956632	1268983	0	-	0.34	(0.32,0.35]	chr2	134218	3	SS3_PROX	SS3_PROX:INTRON	SP3	ENSG00000172845.18	ENST00000310015.12:ENST00000416195.1:ENST00000418194.7:ENST00000652005.2:ENST00000462904.1:ENST00000483084.1:ENST00000490182.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	27	2	4.16186	4.264704999999999	4.36755	0.0300552	0.026079	0.133676	0.129138
chr4	85600858	85600958	1989750	0	+	0.33	(0.32,0.35]	chr4	198930	298	INTRON	INTRON	ARHGAP24	ENSG00000138639.18	ENST00000395184.6:ENST00000503995.5:ENST00000506421.5:ENST00000509709.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	27	2	4.16186	4.264704999999999	4.36755	0.0300552	0.026079	0.133676	0.129138
chr6	7287015	7287115	3053117	0	-	0.33	(0.32,0.35]	chr6	283931	60	UTR3	UTR3:EXON_MRNA:INTRON	SSR1	ENSG00000124783.14	ENST00000474597.5:ENST00000650389.1:ENST00000475213.1:ENST00000244763.9	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	27	2	4.16186	4.264704999999999	4.36755	0.0300552	0.026079	0.133676	0.129138
chr6	83909684	83909778	2912057	0	+	0.340426	(0.32,0.35]	chr6	275154	2	SS3_PROX	SS3_PROX:INTRON	CYB5R4	ENSG00000065615.14	ENST00000369679.4:ENST00000369681.10	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.16186	4.264704999999999	4.36755	0.0300552	0.026079	0.133676	0.129138
chr9	2820896	2820995	4228330	0	-	0.323232	(0.32,0.35]	chr9	388688	4	INTRON	INTRON	PUM3	ENSG00000080608.10	ENST00000397885.3	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.16186	4.264704999999999	4.36755	0.0300552	0.026079	0.133676	0.129138
chr9	77198546	77198646	4145126	0	+	0.33	(0.32,0.35]	chr9	377740	204	INTRON	INTRON	VPS13A	ENSG00000197969.14	ENST00000376636.7:ENST00000360280.8:ENST00000643348.1:ENST00000645632.1	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.16186	4.264704999999999	4.36755	0.0300552	0.026079	0.133676	0.129138
chr1	120617156	120617256	535912	0	-	0.38	(0.378,0.408]	chr1	63034	376	INTRON	INTRON	PDE4DIPP2	ENSG00000275131.3	ENST00000612480.2	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	0	26	2	4.21226	4.264625	4.31699	0.0250408	0.0177403	0.12011	0.11319
chr12	132646847	132646946	5448735	0	-	0.40404	(0.378,0.408]	chr12	521729	25	INTRON	INTRON	POLE	ENSG00000177084.18	ENST00000320574.10:ENST00000672742.1:ENST00000672002.1:ENST00000537064.5:ENST00000535270.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	26	2	4.21226	4.264625	4.31699	0.0250408	0.0177403	0.12011	0.11319
chr15	59012651	59012751	6039133	0	+	0.39	(0.378,0.408]	chr15	574979	81	INTRON	INTRON	RNF111	ENSG00000157450.16	ENST00000559757.1:ENST00000348370.9:ENST00000559160.1:ENST00000559209.5:ENST00000557998.5	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.21226	4.264625	4.31699	0.0250408	0.0177403	0.12011	0.11319
chr16	243267	243366	6271697	0	+	0.40404	(0.378,0.408]	chr16	598373	26	INTRON	INTRON	FAM234A	ENSG00000167930.17	ENST00000301679.7:ENST00000666018.1:ENST00000653392.1:ENST00000659283.1:ENST00000654053.1:ENST00000419173.5:ENST00000399932.8:ENST00000426695.5:ENST00000438220.5:ENST00000447499.1:ENST00000453430.5:ENST00000449945.5:ENST00000420046.5:ENST00000301678.7:ENST00000420500.5:ENST00000417499.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	26	2	4.21226	4.264625	4.31699	0.0250408	0.0177403	0.12011	0.11319
chr16	2671672	2671772	6432554	0	-	0.4	(0.378,0.408]	chr16	619012	47	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	ERVK13-1	ENSG00000260565.8	ENST00000564340.2:ENST00000663379.1:ENST00000661984.1:ENST00000655820.1:ENST00000658381.1:ENST00000662175.1:ENST00000665388.1:ENST00000568395.2:ENST00000656684.1:ENST00000663519.1:ENST00000669589.1:ENST00000660569.1:ENST00000667008.1:ENST00000661380.1:ENST00000654702.1:ENST00000662929.1:ENST00000670385.1:ENST00000654949.1:ENST00000657531.1:ENST00000661849.1:ENST00000658483.1:ENST00000666404.1:ENST00000659184.1:ENST00000659274.1:ENST00000668411.1:ENST00000669151.1:ENST00000657811.1:ENST00000671507.1:ENST00000668680.1:ENST00000666266.1:ENST00000671475.1:ENST00000665778.1:ENST00000653956.1:ENST00000569465.1:ENST00000667109.1:ENST00000562807.6:ENST00000665678.1:ENST00000662943.1:ENST00000657292.1:ENST00000685469.1:ENST00000566343.6:ENST00000671018.1	lncRNA	lncRNA	lncRNA	lncRNA	0	26	2	4.21226	4.264625	4.31699	0.0250408	0.0177403	0.12011	0.11319
chr17	45094003	45094103	6617690	0	+	0.39	(0.378,0.408]	chr17	645337	2	SS5_PROX	SS5_PROX:INTRON	NMT1	ENSG00000136448.13	ENST00000678938.1:ENST00000592782.5:ENST00000676828.1:ENST00000590310.2:ENST00000587014.2:ENST00000591931.2:ENST00000678606.1:ENST00000677949.1:ENST00000587670.2:ENST00000258960.7:ENST00000678576.1:ENST00000676753.1:ENST00000678332.1:ENST00000543908.5:ENST00000590114.6:ENST00000585561.5:ENST00000592654.3:ENST00000588455.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	26	2	4.21226	4.264625	4.31699	0.0250408	0.0177403	0.12011	0.11319
chr22	45171177	45171277	7529937	0	+	0.38	(0.378,0.408]	chr22	769878	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NUP50	ENSG00000093000.19	ENST00000347635.9:ENST00000407019.6:ENST00000424634.5:ENST00000497960.5:ENST00000417702.5:ENST00000430547.5:ENST00000434760.5:ENST00000484186.5:ENST00000493456.5:ENST00000396096.6:ENST00000419387.5:ENST00000422489.1:ENST00000486184.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	26	2	4.21226	4.264625	4.31699	0.0250408	0.0177403	0.12011	0.11319
chr6	161002552	161002652	3024598	0	+	0.38	(0.378,0.408]	chr6	282304	101	INTRON	INTRON	MAP3K4	ENSG00000085511.20	ENST00000366919.6:ENST00000392142.9:ENST00000542952.5:ENST00000366920.6:ENST00000348824.11:ENST00000544041.5:ENST00000490904.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	26	2	4.21226	4.264625	4.31699	0.0250408	0.0177403	0.12011	0.11319
chr8	42002541	42002641	3940811	0	-	0.4	(0.378,0.408]	chr8	361223	146	INTRON	INTRON	KAT6A	ENSG00000083168.11	ENST00000406337.6:ENST00000265713.8:ENST00000396930.4:ENST00000648335.1:ENST00000649827.1:ENST00000485568.5:ENST00000647809.1:ENST00000648030.1:ENST00000650356.1:ENST00000470574.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	26	2	4.21226	4.264625	4.31699	0.0250408	0.0177403	0.12011	0.11319
chr9	96772694	96772793	4297053	0	-	0.383838	(0.378,0.408]	chr9	395138	87	INTRON	INTRON	ZNF510	ENSG00000081386.13	ENST00000223428.9:ENST00000375231.5:ENST00000374641.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	26	2	4.21226	4.264625	4.31699	0.0250408	0.0177403	0.12011	0.11319
chrX	110090206	110090306	7700913	0	+	0.38	(0.378,0.408]	chrX	788144	76	INTRON	INTRON	TMEM164	ENSG00000157600.12	ENST00000372072.7:ENST00000372073.5:ENST00000372068.7:ENST00000288381.4:ENST00000461715.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	26	2	4.21226	4.264625	4.31699	0.0250408	0.0177403	0.12011	0.11319
chrX	115116032	115116132	7868690	0	-	0.38	(0.378,0.408]	chrX	801566	23	INTRON	INTRON	LRCH2	ENSG00000130224.15	ENST00000317135.13:ENST00000538422.2	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.21226	4.264625	4.31699	0.0250408	0.0177403	0.12011	0.11319
chr6	34687748	34687848	3086130	0	-	0.37	(0.35,0.378]	chr6	288696	159	INTRON	INTRON	ILRUN	ENSG00000196821.10	ENST00000374026.7:ENST00000374023.8	protein_coding	protein_coding	protein_coding	protein_coding	1	56	2	3.26794	4.264595	5.26125	0.00257067	0.00191117	0.0466761	0.03947
chr8	18006397	18006497	3708607	0	+	0.36	(0.35,0.378]	chr8	343994	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	PCM1	ENSG00000078674.19	ENST00000325083.13:ENST00000519253.5:ENST00000524226.5:ENST00000522275.5:ENST00000521338.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	56	2	3.26794	4.264595	5.26125	0.00257067	0.00191117	0.0466761	0.03947
chr5	141575446	141575546	2739729	0	-	0.51	(0.476,0.515]	chr5	258094	3	SS3_PROX	SS3_PROX:INTRON	DIAPH1	ENSG00000131504.18	ENST00000647433.1:ENST00000389054.8:ENST00000518047.5:ENST00000647330.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	54	2	3.07422	4.26406	5.4539	0.00506023	5.16081e-4	0.0646039	0.0208667
chr1	227237989	227238089	650914	0	-	0.36	(0.35,0.378]	chr1	77102	182	INTRON	INTRON	CDC42BPA	ENSG00000143776.20	ENST00000366766.8:ENST00000366769.7:ENST00000334218.9:ENST00000366767.7:ENST00000366764.8:ENST00000478573.6:ENST00000682551.1:ENST00000462553.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	56	2	3.21677	4.263675	5.31058	0.00313804	0.00160599	0.0514466	0.0364977
chr2	75894984	75895084	817109	0	+	0.36	(0.35,0.378]	chr2	91391	221	INTRON	INTRON	ENSG00000287474	ENSG00000287474.1	ENST00000670606.1	lncRNA	lncRNA	lncRNA	lncRNA	1	56	2	3.21677	4.263675	5.31058	0.00313804	0.00160599	0.0514466	0.0364977
chr6	149585081	149585180	2995863	0	+	0.353535	(0.35,0.378]	chr6	280315	21	INTRON	INTRON	GINM1	ENSG00000055211.14	ENST00000650599.1:ENST00000367419.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	56	2	3.21677	4.263675	5.31058	0.00313804	0.00160599	0.0514466	0.0364977
chr20	32392223	32392323	7256165	0	+	0.47	(0.44,0.476]	chr20	737076	198	INTRON	INTRON	ASXL1	ENSG00000171456.21	ENST00000651418.1:ENST00000375687.10:ENST00000613218.4:ENST00000644587.1:ENST00000620121.4:ENST00000646985.1:ENST00000643168.1:ENST00000306058.9:ENST00000645688.1:ENST00000470145.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	117	2	4.06023	4.263669999999999	4.46711	9.08057e-5	4.64215e-6	0.00848604	0.00144728
chr20	17952192	17952290	7320396	0	-	0.346939	(0.32,0.35]	chr20	745304	2	SS5_PROX	SS5_PROX:INTRON	SNX5	ENSG00000089006.17	ENST00000377768.7:ENST00000490175.5:ENST00000483485.5:ENST00000377759.9:ENST00000476648.5:ENST00000431277.5:ENST00000419004.2:ENST00000494401.5:ENST00000474883.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	95	2	2.33698	4.26363	6.19028	0.00536261	6.56527e-5	0.0663076	0.00715734
chr1	1723423	1723515	361207	0	-	0.456522	(0.44,0.476]	chr1	42105	2	SS5_PROX	SS5_PROX:INTRON	CDK11A:ENSG00000268575	ENSG00000008128.23:ENSG00000268575.1	ENST00000404249.8:ENST00000598846.1:ENST00000357760.6:ENST00000358779.9:ENST00000378633.5:ENST00000460465.5:ENST00000479362.1:ENST00000487462.1:ENST00000401096.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA	1	57	2	3.02751	4.263145	5.49878	0.00715968	1.52058e-4	0.0723634	0.0106137
chr10	110598390	110598490	4521005	0	+	0.46	(0.44,0.476]	chr10	417078	1	SS5_PROX	SS5_PROX:INTRON	SMC3	ENSG00000108055.11	ENST00000684988.1:ENST00000361804.5:ENST00000685743.1:ENST00000689321.1:ENST00000689986.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	57	2	3.17572	4.26302	5.35032	0.00427037	3.02713e-4	0.0573912	0.0155054
chr2	229807021	229807112	1340492	0	-	0.252747	[0,0.28]	chr2	140367	8	INTRON	INTRON	TRIP12	ENSG00000153827.14	ENST00000675453.1:ENST00000675903.1:ENST00000283943.9:ENST00000675423.1:ENST00000389044.8:ENST00000389045.7	protein_coding	protein_coding	protein_coding	protein_coding	2	89	2	2.6632	4.262425	5.86165	0.00515076	0.00101071	0.0650394	0.0291154
chr17	47651027	47651111	6622586	0	+	0.345238	(0.32,0.35]	chr17	645996	2	INTRON	INTRON	KPNB1	ENSG00000108424.11	ENST00000535458.6:ENST00000583648.6:ENST00000290158.9:ENST00000577918.5:ENST00000577875.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	132	2	1.85455	4.2623	6.67005	0.00835992	6.18326e-6	0.0821555	0.00186272
chr21	29343710	29343808	7392805	0	+	0.438776	(0.408,0.44]	chr21	753210	10	UTR3	UTR3:EXON_MRNA:INTRON	BACH1	ENSG00000156273.16	ENST00000286800.8:ENST00000399921.5:ENST00000422809.5:ENST00000468059.1	protein_coding	protein_coding	protein_coding	protein_coding	3	86	2	2.46587	4.262105	6.05834	0.00280622	4.06336e-5	0.0488779	0.00539487
chr19	29962247	29962347	7047754	0	+	0.26	[0,0.28]	chr19	702663	38	INTRON	INTRON	URI1	ENSG00000105176.18	ENST00000360605.8:ENST00000570564.5:ENST00000574233.5:ENST00000392271.6:ENST00000574110.5:ENST00000574666.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	73	2	2.73384	4.26188	5.78992	0.0246308	2.85302e-4	0.12011	0.0150568
chr12	112049811	112049911	5414817	0	-	0.35	(0.32,0.35]	chr12	517164	2	SS3_PROX	SS3_PROX:INTRON	NAA25	ENSG00000111300.10	ENST00000261745.9:ENST00000552527.5:ENST00000549711.5:ENST00000551858.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	135	2	4.01906	4.2618	4.50454	1.78578e-4	5.92228e-6	0.0121697	0.00170648
chr16	46613160	46613259	6478035	0	-	0.50505	(0.476,0.515]	chr16	626595	44	INTRON	INTRON	SHCBP1	ENSG00000171241.9	ENST00000303383.8:ENST00000569702.1:ENST00000566016.5:ENST00000565887.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	27	2	3.83018	4.26169	4.6932	0.0423385	0.00753088	0.161744	0.074841
chr20	62943792	62943892	7299575	0	+	0.49	(0.476,0.515]	chr20	742728	1	SS5_PROX	SS5_PROX:INTRON	GID8	ENSG00000101193.8	ENST00000266069.5	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	3.83018	4.26169	4.6932	0.0423385	0.00753088	0.161744	0.074841
chr6	118904952	118905051	2947268	0	+	0.494949	(0.476,0.515]	chr6	277429	37	INTRON	INTRON	ASF1A	ENSG00000111875.8	ENST00000229595.6	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	3.83018	4.26169	4.6932	0.0423385	0.00753088	0.161744	0.074841
chr2	75984855	75984955	818008	0	+	0.19	[0,0.28]	chr2	91391	1120	INTRON	INTRON	ENSG00000287474	ENSG00000287474.1	ENST00000670606.1	lncRNA	lncRNA	lncRNA	lncRNA	1	73	2	3.0836	4.26164	5.43968	0.00940284	0.00113119	0.0817766	0.0308465
chr5	10357363	10357463	2317683	0	+	0.29	(0.28,0.32]	chr5	224612	23	INTRON	INTRON	MARCHF6	ENSG00000145495.16	ENST00000274140.10:ENST00000449913.6:ENST00000502795.5:ENST00000511802.5:ENST00000503788.5:ENST00000640713.1:ENST00000510872.5:ENST00000507863.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	235	2	3.80936	4.26161	4.71386	7.83114e-6	2.70644e-6	0.00211364	0.00105261
chr11	46577932	46578032	4947099	0	-	0.4	(0.378,0.408]	chr11	463525	285	INTRON	INTRON	AMBRA1	ENSG00000110497.15	ENST00000683756.1:ENST00000534300.5:ENST00000533727.5:ENST00000314845.7:ENST00000458649.6:ENST00000528950.1:ENST00000531542.1:ENST00000526606.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	59	2	2.90162	4.26146	5.6213	0.0113157	9.58854e-5	0.0886121	0.00822887
chr11	46570237	46570337	4947022	0	-	0.4	(0.378,0.408]	chr11	463525	208	INTRON	INTRON	AMBRA1	ENSG00000110497.15	ENST00000683756.1:ENST00000534300.5:ENST00000533727.5:ENST00000314845.7:ENST00000458649.6:ENST00000528950.1:ENST00000531542.1:ENST00000526606.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	56	2	3.64529	4.261455	4.87762	0.00553849	4.71767e-4	0.0648867	0.0196294
chr12	22634957	22635057	5094840	0	+	0.34	(0.32,0.35]	chr12	481224	89	INTRON	INTRON	ETNK1	ENSG00000139163.16	ENST00000671733.1:ENST00000335148.8:ENST00000672951.1:ENST00000266517.9:ENST00000538218.2:ENST00000673496.1:ENST00000673406.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	94	2	2.68204	4.26136	5.84068	0.00120582	3.015e-4	0.0320487	0.0160895
chr21	33914877	33914971	7445043	0	-	0.382979	(0.378,0.408]	chr21	759742	5	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ENSG00000249209:ATP5PO	ENSG00000249209.2:ENSG00000241837.7	ENST00000429238.2:ENST00000290299.7:ENST00000491703.5:ENST00000431254.5:ENST00000652380.1:ENST00000495005.5:ENST00000496044.5:ENST00000484627.5:ENST00000487374.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	59	2	3.23708	4.261145	5.28521	0.00365053	4.52877e-4	0.0535094	0.0192381
chr13	28147983	28148083	5460923	0	+	0.55	(0.515,0.57]	chr13	523235	85	INTRON	INTRON	PAN3	ENSG00000152520.14	ENST00000503791.5:ENST00000380958.8:ENST00000399613.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	49	2	3.47959	4.2609200000000005	5.04225	0.00131841	8.38022e-4	0.0331539	0.0263691
chr13	95124499	95124599	5638085	0	-	0.41	(0.408,0.44]	chr13	537056	81	INTRON	INTRON	ABCC4	ENSG00000125257.16	ENST00000645237.2:ENST00000643051.1:ENST00000643842.1:ENST00000646439.1:ENST00000644880.1:ENST00000643816.1:ENST00000536256.3:ENST00000643556.1:ENST00000629385.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	119	2	3.87731	4.26092	4.64453	2.32969e-4	1.44544e-6	0.013966	7.22593e-4
chr2	230782828	230782927	1030863	0	+	0.606061	(0.57,1]	chr2	110016	30	INTRON	INTRON	CAB39	ENSG00000135932.12	ENST00000258418.10:ENST00000409788.7:ENST00000410084.7:ENST00000484398.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	102	2	3.5413	4.26088	4.98046	2.62787e-6	2.07046e-8	0.0010365	4.66779e-5
chr12	112225248	112225348	5416129	0	-	0.26	[0,0.28]	chr12	517437	54	INTRON	INTRON	HECTD4	ENSG00000173064.14	ENST00000550722.5:ENST00000377560.9:ENST00000682272.1:ENST00000550968.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	67	2	3.41114	4.260735	5.11033	0.00991388	0.00211753	0.0838372	0.0425644
chr11	17134818	17134888	4928334	0	-	0.385714	(0.378,0.408]	chr11	461433	1	CDS	CDS:EXON_MRNA:INTRON	PIK3C2A	ENSG00000011405.14	ENST00000531428.1:ENST00000265970.11:ENST00000691414.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	60	2	3.93712	4.260695	4.58427	0.0128325	1.09377e-4	0.0926667	0.00884858
chr4	70910144	70910244	1970583	0	+	0.53	(0.515,0.57]	chr4	197571	72	INTRON	INTRON	MOB1B	ENSG00000173542.9	ENST00000502869.5:ENST00000509041.5:ENST00000309395.7:ENST00000396051.2:ENST00000511449.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	49	2	3.19178	4.260675	5.32957	0.00289534	4.06834e-4	0.0494641	0.0185763
chr6	130884409	130884502	3219283	0	-	0.354839	(0.35,0.378]	chr6	299212	9	INTRON	INTRON	EPB41L2	ENSG00000079819.19	ENST00000628542.2:ENST00000445890.6:ENST00000337057.8:ENST00000530481.5:ENST00000528282.5:ENST00000392427.7:ENST00000368128.6:ENST00000527411.5:ENST00000525271.5:ENST00000529208.5:ENST00000525193.5:ENST00000527659.5:ENST00000456097.6:ENST00000639623.1	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	3.80129	4.26041	4.71953	0.0504034	0.0103314	0.17488	0.0850389
chrX	24819368	24819467	7632981	0	+	0.353535	(0.35,0.378]	chrX	781765	39	INTRON	INTRON	POLA1	ENSG00000101868.13	ENST00000672178.1:ENST00000379068.8:ENST00000379059.7:ENST00000611764.2:ENST00000679301.1:ENST00000494204.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	28	2	3.80129	4.26041	4.71953	0.0504034	0.0103314	0.17488	0.0850389
chr16	88704692	88704790	6539430	0	-	0.632653	(0.57,1]	chr16	633807	12	INTRON	INTRON	RNF166	ENSG00000158717.11	ENST00000562544.1:ENST00000312838.9:ENST00000567844.1	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	3.31859	4.26037	5.20215	0.00137292	8.28896e-5	0.0340241	0.00812487
chr1	19227820	19227912	386971	0	-	0.315217	(0.28,0.32]	chr1	46167	5	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	EMC1	ENSG00000127463.16	ENST00000477853.6:ENST00000688219.1:ENST00000690732.1:ENST00000690451.1:ENST00000688667.1:ENST00000685099.1:ENST00000685594.1:ENST00000690823.1:ENST00000692207.1:ENST00000688332.1:ENST00000693007.1:ENST00000688918.1:ENST00000691945.1:ENST00000375199.7:ENST00000375208.7:ENST00000486405.2:ENST00000494770.7:ENST00000692400.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	91	2	2.36963	4.260325	6.15102	0.0157022	2.27393e-5	0.101453	0.00372337
chr1	202760973	202761073	620260	0	-	0.45	(0.44,0.476]	chr1	73623	4	SS3_PROX	SS3_PROX:INTRON	KDM5B	ENSG00000117139.18	ENST00000367265.9:ENST00000648338.1:ENST00000649542.1:ENST00000647757.1:ENST00000367264.7:ENST00000648473.1:ENST00000650569.1:ENST00000648056.1:ENST00000649770.1:ENST00000648469.1:ENST00000650417.1:ENST00000235790.9:ENST00000650422.1:ENST00000649321.1:ENST00000648738.1:ENST00000648744.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	27	2	3.8344	4.26002	4.68564	0.041276	0.00816201	0.161534	0.0766625
chr16	70151217	70151315	6383829	0	+	0.469388	(0.44,0.476]	chr16	613553	23	INTRON	INTRON	PDPR	ENSG00000090857.14	ENST00000288050.9:ENST00000568530.5:ENST00000398122.7:ENST00000565186.5:ENST00000562100.5:ENST00000569042.5:ENST00000567046.5:ENST00000563930.5:ENST00000564563.1:ENST00000567896.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	27	2	3.8344	4.26002	4.68564	0.041276	0.00816201	0.161534	0.0766625
chr19	19082600	19082700	7034303	0	+	0.47	(0.44,0.476]	chr19	701229	181	INTRON	INTRON	SLC25A42	ENSG00000181035.14	ENST00000318596.8:ENST00000597661.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	27	2	3.8344	4.26002	4.68564	0.041276	0.00816201	0.161534	0.0766625
chr2	36571796	36571896	1092540	0	-	0.46	(0.44,0.476]	chr2	117077	104	INTRON	INTRON	FEZ2	ENSG00000171055.15	ENST00000414288.5:ENST00000379245.8:ENST00000405912.8:ENST00000413938.5:ENST00000441005.5:ENST00000305852.11:ENST00000451623.5:ENST00000487282.5:ENST00000464964.1:ENST00000357996.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	27	2	3.8344	4.26002	4.68564	0.041276	0.00816201	0.161534	0.0766625
chr2	46727134	46727234	770900	0	+	0.46	(0.44,0.476]	chr2	86978	273	INTRON	INTRON	SOCS5	ENSG00000171150.9	ENST00000306503.5:ENST00000394861.3	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	3.8344	4.26002	4.68564	0.041276	0.00816201	0.161534	0.0766625
chr3	47509548	47509648	1683022	0	-	0.45	(0.44,0.476]	chr3	171929	47	INTRON	INTRON	ELP6	ENSG00000163832.16	ENST00000296149.9:ENST00000442215.6:ENST00000446787.5:ENST00000439305.5:ENST00000412761.5:ENST00000444760.5:ENST00000445044.5:ENST00000461208.5:ENST00000425291.5:ENST00000494161.1:ENST00000449409.5:ENST00000414236.5:ENST00000485029.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	27	2	3.8344	4.26002	4.68564	0.041276	0.00816201	0.161534	0.0766625
chr3	158733281	158733365	1543589	0	+	0.452381	(0.44,0.476]	chr3	160545	4	INTRON	INTRON	MFSD1	ENSG00000118855.21	ENST00000486568.5:ENST00000491804.1	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	3.8344	4.26002	4.68564	0.041276	0.00816201	0.161534	0.0766625
chr2	97535507	97535604	1183681	0	-	0.298969	(0.28,0.32]	chr2	126915	28	INTRON	INTRON	ANKRD36B	ENSG00000196912.13	ENST00000359901.9:ENST00000258459.12	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.01002	4.2599149999999995	4.50981	0.0434868	0.0275554	0.162255	0.123904
chr2	177217945	177218045	925973	0	+	0.29	(0.28,0.32]	chr2	101757	1	SS5_PROX	SS5_PROX:INTRON	HNRNPA3	ENSG00000170144.21	ENST00000392524.6:ENST00000679159.1:ENST00000678111.1:ENST00000678421.1:ENST00000677863.1:ENST00000676681.1:ENST00000676629.1:ENST00000677337.1:ENST00000676488.1:ENST00000677043.1:ENST00000676874.1:ENST00000676762.1:ENST00000411529.6:ENST00000676736.1:ENST00000483137.2:ENST00000677508.1:ENST00000435711.5:ENST00000679328.1:ENST00000432457.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	28	2	4.01002	4.2599149999999995	4.50981	0.0434868	0.0275554	0.162255	0.123904
chr6	106201471	106201562	3176911	0	-	0.318681	(0.28,0.32]	chr6	296155	1	SS5_PROX	SS5_PROX:INTRON	ATG5	ENSG00000057663.16	ENST00000636437.1:ENST00000636335.1:ENST00000369070.5:ENST00000369076.8:ENST00000635758.2:ENST00000360666.6:ENST00000343245.7:ENST00000475645.1:ENST00000646025.1:ENST00000613993.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	28	2	4.01002	4.2599149999999995	4.50981	0.0434868	0.0275554	0.162255	0.123904
chr7	92743457	92743557	3572328	0	-	0.31	(0.28,0.32]	chr7	332804	173	INTRON	INTRON	CDK6	ENSG00000105810.10	ENST00000424848.3:ENST00000265734.8	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.01002	4.2599149999999995	4.50981	0.0434868	0.0275554	0.162255	0.123904
chr8	126263904	126264004	4051271	0	-	0.3	(0.28,0.32]	chr8	369353	1505	INTRON	INTRON	LINC00861	ENSG00000245164.9	ENST00000651482.1	lncRNA	lncRNA	lncRNA	lncRNA	0	28	2	4.01002	4.2599149999999995	4.50981	0.0434868	0.0275554	0.162255	0.123904
chr17	57437100	57437199	6634565	0	+	0.363636	(0.35,0.378]	chr17	648049	46	INTRON	INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000674961.1:ENST00000582453.5:ENST00000675656.1:ENST00000322684.7:ENST00000442934.6:ENST00000579180.2:ENST00000579205.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	61	2	2.83709	4.2593700000000005	5.68165	0.01435	9.36553e-5	0.0966737	0.00811835
chr17	66396615	66396715	6663238	0	+	0.48	(0.476,0.515]	chr17	650326	324	INTRON	INTRON	PRKCA	ENSG00000154229.12	ENST00000413366.8:ENST00000578063.5:ENST00000284384.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	73	2	2.53671	4.258995	5.98128	0.00624027	4.70386e-5	0.0718843	0.00593131
chr1	24770699	24770799	46314	0	+	0.33	(0.32,0.35]	chr1	5764	247	INTRON	INTRON	CLIC4	ENSG00000169504.15	ENST00000488683.1:ENST00000497755.1:ENST00000489758.1:ENST00000374379.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	59	2	3.49869	4.258929999999999	5.01917	0.0055659	0.00108004	0.0648867	0.0300133
chr7	6391226	6391324	3273188	0	+	0.346939	(0.32,0.35]	chr7	304317	36	INTRON	INTRON	RAC1	ENSG00000136238.19	ENST00000348035.9:ENST00000356142.4:ENST00000696666.1:ENST00000488373.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	94	2	2.70967	4.2585049999999995	5.80734	0.00105927	3.45606e-4	0.0299929	0.0173197
chr7	75483897	75483997	3558909	0	-	0.48	(0.476,0.515]	chr7	331556	3	SS5_PROX	SS5_PROX:INTRON	POM121C:ENSG00000242073	ENSG00000272391.6:ENSG00000242073.2	ENST00000615331.5:ENST00000398379.2:ENST00000415277.2	protein_coding	protein_coding	protein_coding:transcribed_unprocessed_pseudogene	protein_coding:transcribed_unprocessed_pseudogene	2	71	2	2.89165	4.2584349999999995	5.62522	0.00142068	2.4907e-4	0.034662	0.0145812
chr7	72656592	72656692	3551993	0	-	0.33	(0.32,0.35]	chr7	330530	272	INTRON	INTRON	TYW1B	ENSG00000277149.5	ENST00000612372.4:ENST00000620995.5	protein_coding	protein_coding	protein_coding	protein_coding	1	58	2	3.28107	4.258135	5.2352	0.0028268	0.00262488	0.0472361	0.0470772
chr6	75646851	75646951	2905404	0	+	0.27	[0,0.28]	chr6	274523	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	SENP6	ENSG00000112701.18	ENST00000370010.6:ENST00000447266.7:ENST00000327284.12:ENST00000483859.6:ENST00000424947.6:ENST00000436928.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	68	2	3.51361	4.25812	5.00263	0.013055	0.00142208	0.093385	0.0346633
chr22	20939233	20939333	7480736	0	+	0.47	(0.44,0.476]	chr22	763096	46	INTRON	INTRON	CRKL	ENSG00000099942.13	ENST00000354336.8:ENST00000411769.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	92	2	2.32184	4.258005	6.19417	0.00609071	3.48092e-6	0.0676501	0.00120947
chr7	105144603	105144692	3601446	0	-	0.325843	(0.32,0.35]	chr7	336090	7	INTRON	INTRON	SRPK2	ENSG00000135250.17	ENST00000393651.8:ENST00000357311.7:ENST00000485455.1:ENST00000489828.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	68	2	2.4458	4.2579899999999995	6.07018	0.0425977	1.93822e-5	0.148082	0.00338472
chr12	104686767	104686867	5212986	0	+	0.54	(0.515,0.57]	chr12	493329	844	INTRON	INTRON	CHST11	ENSG00000171310.11	ENST00000303694.6:ENST00000549260.5:ENST00000549016.1	protein_coding	protein_coding	protein_coding	protein_coding	1	52	2	2.90311	4.2578	5.61249	0.0094233	4.24748e-5	0.0817766	0.00526976
chr13	112541360	112541460	5651239	0	-	0.49	(0.476,0.515]	chr13	538478	135	INTRON	INTRON	TUBGCP3	ENSG00000126216.15	ENST00000261965.8:ENST00000649778.1:ENST00000375669.7:ENST00000462580.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	58	2	3.45711	4.25779	5.05847	0.00140905	0.00108081	0.0340865	0.0300133
chr15	28278080	28278179	6123620	0	-	0.424242	(0.408,0.44]	chr15	583381	27	INTRON	INTRON	HERC2	ENSG00000128731.18	ENST00000261609.13:ENST00000564734.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	59	2	2.71911	4.25748	5.79585	0.0189489	3.36399e-5	0.108861	0.00463632
chr3	47618512	47618611	1683410	0	-	0.343434	(0.32,0.35]	chr3	171972	78	INTRON	INTRON	SMARCC1	ENSG00000173473.11	ENST00000254480.10:ENST00000425518.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	86	2	2.78391	4.257375	5.73084	0.00347285	1.07676e-4	0.052042	0.00878438
chr16	75327018	75327118	6528223	0	-	0.53	(0.515,0.57]	chr16	632300	206	INTRON	INTRON	CFDP1	ENSG00000153774.9	ENST00000283882.4:ENST00000564793.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	52	2	3.45014	4.257365	5.06459	0.00116948	6.03964e-4	0.0312127	0.0223465
chr1	174245175	174245272	257969	0	+	0.443299	(0.44,0.476]	chr1	30760	10	UTR3	UTR3:EXON_MRNA:INTRON	RABGAP1L	ENSG00000152061.24	ENST00000357444.10:ENST00000251507.8:ENST00000681986.1:ENST00000635248.1:ENST00000457696.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	54	2	3.02366	4.257315	5.49097	0.00603307	4.8612e-4	0.0700813	0.0203841
chr19	9818044	9818098	7134029	0	-	0.462963	(0.44,0.476]	chr19	719006	1	SS5_PROX	SS5_PROX:INTRON	FBXL12	ENSG00000127452.9	ENST00000589626.5:ENST00000586651.5:ENST00000247977.9:ENST00000588922.5:ENST00000585379.5:ENST00000592732.5:ENST00000589438.1:ENST00000592067.1:ENST00000590808.1:ENST00000590277.1:ENST00000586469.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	108	2	2.22991	4.25721	6.28451	0.00208483	1.11581e-5	0.0424672	0.00263978
chr8	61709183	61709283	3959062	0	-	0.35	(0.32,0.35]	chr8	363195	195	INTRON	INTRON	ASPH	ENSG00000198363.18	ENST00000379454.9:ENST00000445642.6:ENST00000356457.9:ENST00000519234.5:ENST00000518068.5:ENST00000517856.5:ENST00000379449.10	protein_coding	protein_coding	protein_coding	protein_coding	1	63	2	3.07935	4.256975	5.4346	0.00724137	4.09682e-4	0.0729826	0.0181306
chr13	51966786	51966882	5596460	0	-	0.4375	(0.408,0.44]	chr13	534953	14	INTRON	INTRON	ATP7B	ENSG00000123191.16	ENST00000242839.10:ENST00000344297.9:ENST00000674147.1:ENST00000448424.7:ENST00000634620.1:ENST00000400370.8:ENST00000634844.1:ENST00000673772.1:ENST00000634308.1:ENST00000418097.7:ENST00000400366.6:ENST00000635406.1:ENST00000482841.6:ENST00000483772.2:ENST00000673864.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	27	2	3.83494	4.25694	4.67894	0.0411442	0.0087648	0.161534	0.0788605
chr17	49355508	49355608	6792484	0	-	0.41	(0.408,0.44]	chr17	670175	326	INTRON	INTRON	ZNF652	ENSG00000198740.9	ENST00000430262.3:ENST00000508237.5:ENST00000362063.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	27	2	3.83494	4.25694	4.67894	0.0411442	0.0087648	0.161534	0.0788605
chr18	46257881	46257980	6899927	0	+	0.434343	(0.408,0.44]	chr18	683638	37	INTRON	INTRON	C18orf25	ENSG00000152242.11	ENST00000615052.5:ENST00000619301.4	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	3.83494	4.25694	4.67894	0.0411442	0.0087648	0.161534	0.0788605
chr4	122893781	122893880	2035582	0	+	0.434343	(0.408,0.44]	chr4	202291	15	UTR3	UTR3:EXON_MRNA	FGF2	ENSG00000138685.17	ENST00000264498.8:ENST00000644866.2:ENST00000608478.1	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	3.83494	4.25694	4.67894	0.0411442	0.0087648	0.161534	0.0788605
chr3	28252534	28252633	1390653	0	+	0.30303	(0.28,0.32]	chr3	145630	103	INTRON	INTRON	CMC1	ENSG00000187118.14	ENST00000477739.1:ENST00000423894.5:ENST00000466830.6:ENST00000334841.10:ENST00000418849.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	67	2	2.78004	4.2567450000000004	5.73345	0.0193244	1.71668e-4	0.108861	0.0113605
chr3	5189493	5189583	1354198	0	+	0.211111	[0,0.28]	chr3	142412	2	UTR3	UTR3:EXON_MRNA:INTRON	EDEM1	ENSG00000134109.11	ENST00000434243.5:ENST00000256497.9:ENST00000465369.5:ENST00000443790.1:ENST00000465187.1:ENST00000445686.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	73	2	2.68918	4.25662	5.82406	0.0275571	2.47093e-4	0.123904	0.0139149
chr3	47864660	47864760	1685229	0	-	0.37	(0.35,0.378]	chr3	172155	68	INTRON	INTRON	MAP4	ENSG00000047849.22	ENST00000429422.5:ENST00000683076.1:ENST00000395734.7:ENST00000426837.6:ENST00000360240.10:ENST00000420772.6:ENST00000335271.9	protein_coding	protein_coding	protein_coding	protein_coding	1	56	2	3.10863	4.256539999999999	5.40445	0.00470896	0.00114224	0.0631419	0.0307966
chr5	119166698	119166781	2460746	0	+	0.373494	(0.35,0.378]	chr5	235709	2	CDS	CDS:EXON_MRNA	DMXL1	ENSG00000172869.15	ENST00000539542.6:ENST00000311085.8	protein_coding	protein_coding	protein_coding	protein_coding	2	75	2	3.02027	4.256425	5.49258	8.40802e-4	8.19894e-4	0.0264086	0.0263691
chr9	136443522	136443622	4374607	0	-	0.52	(0.515,0.57]	chr9	402943	3	SS5_PROX	SS5_PROX:INTRON	SEC16A	ENSG00000148396.19	ENST00000467838.2:ENST00000290037.10:ENST00000313050.11:ENST00000371706.8:ENST00000453963.5:ENST00000277537.10:ENST00000313084.9:ENST00000684901.1:ENST00000689049.1:ENST00000689439.1:ENST00000688461.1:ENST00000688052.1:ENST00000690691.1:ENST00000431893.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	50	2	3.67453	4.256085000000001	4.83764	0.00279527	3.27949e-4	0.0469265	0.0160995
chr19	16843834	16843931	7027513	0	+	0.484536	(0.476,0.515]	chr19	699476	15	INTRON	INTRON	SIN3B	ENSG00000127511.10	ENST00000248054.10:ENST00000379803.5:ENST00000596802.5:ENST00000596638.1	protein_coding	protein_coding	protein_coding	protein_coding	1	57	2	3.81894	4.25607	4.6932	0.00753088	1.96038e-4	0.074841	0.0122528
chr2	15427112	15427210	1071805	0	-	0.377551	(0.35,0.378]	chr2	114362	23	INTRON	INTRON	NBAS	ENSG00000151779.13	ENST00000281513.10	protein_coding	protein_coding	protein_coding	protein_coding	3	169	2	4.15416	4.2559450000000005	4.35773	2.66568e-5	1.18139e-6	0.00428463	6.27853e-4
chr2	87498595	87498695	826359	0	+	0.33	(0.32,0.35]	chr2	92436	106	INTRON	INTRON	CYTOR:ENSG00000284879	ENSG00000222041.12:ENSG00000284879.1	ENST00000642796.1:ENST00000643589.1:ENST00000642451.1:ENST00000646386.1:ENST00000644478.1:ENST00000409139.6:ENST00000331944.10:ENST00000644125.1:ENST00000643743.1:ENST00000644577.1:ENST00000643276.1:ENST00000409898.2:ENST00000419680.6:ENST00000644976.1:ENST00000643070.1:ENST00000646855.1:ENST00000414584.1:ENST00000455131.5:ENST00000646636.1:ENST00000642293.1:ENST00000423846.5:ENST00000644040.1:ENST00000645138.1:ENST00000437561.2:ENST00000629257.1:ENST00000645729.1	lncRNA	lncRNA	lncRNA	lncRNA	1	64	2	3.27858	4.2559249999999995	5.23327	0.00368368	9.33826e-4	0.0535094	0.0278746
chr7	50759400	50759498	3532339	0	-	0.489796	(0.476,0.515]	chr7	329519	30	INTRON	INTRON	GRB10	ENSG00000106070.20	ENST00000335866.7:ENST00000401949.6:ENST00000644769.1:ENST00000644879.1:ENST00000402497.6:ENST00000407526.6:ENST00000645075.2:ENST00000439044.7:ENST00000644716.1:ENST00000483819.1:ENST00000470992.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	54	2	3.53895	4.255739999999999	4.97253	0.00311573	0.00075485700000000005	0.0498063	0.0251966
chr5	69908375	69908475	2382086	0	+	0.34	(0.32,0.35]	chr5	229544	327	INTRON	INTRON	GUSBP13	ENSG00000198237.8	ENST00000506490.2	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	1	58	2	3.3273	4.255725	5.18415	0.00333629	0.00218894	0.0512081	0.0435144
chr20	58986480	58986571	7291286	0	+	0.494505	(0.476,0.515]	chr20	741879	4	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NELFCD	ENSG00000101158.15	ENST00000602795.6:ENST00000492016.5:ENST00000471621.5:ENST00000652272.2:ENST00000460601.5:ENST00000482747.1:ENST00000464363.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	116	2	4.03257	4.2555499999999995	4.47853	9.96835e-5	4.44592e-6	0.00903184	0.00142022
chr3	177099304	177099404	1871457	0	-	0.48	(0.476,0.515]	chr3	187400	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	TBL1XR1	ENSG00000177565.18	ENST00000457928.7:ENST00000430069.5:ENST00000673974.1:ENST00000352800.10:ENST00000422442.6:ENST00000428970.5:ENST00000424913.5:ENST00000437738.5:ENST00000431421.5:ENST00000635794.1:ENST00000630796.2:ENST00000450267.5:ENST00000630833.2:ENST00000431674.5:ENST00000422066.5:ENST00000443315.5:ENST00000627825.2:ENST00000427349.5:ENST00000413084.5:ENST00000637137.1:ENST00000491623.2:ENST00000637544.1:ENST00000636478.1:ENST00000637755.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	71	2	2.96824	4.25517	5.5421	9.98194e-4	3.56777e-4	0.0290732	0.0175154
chrX	103679939	103680038	7856512	0	-	0.484848	(0.476,0.515]	chrX	801086	9	INTRON	INTRON	MORF4L2	ENSG00000123562.18	ENST00000360458.5:ENST00000441076.7:ENST00000433176.6:ENST00000451301.5:ENST00000434230.5:ENST00000418819.5:ENST00000442614.5:ENST00000492116.5:ENST00000422355.5:ENST00000474653.5:ENST00000498064.1:ENST00000467755.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	71	2	2.96824	4.25517	5.5421	9.98194e-4	3.56777e-4	0.0290732	0.0175154
chr9	125300790	125300889	4198649	0	+	0.313131	(0.28,0.32]	chr9	383168	13	INTRON	INTRON	GAPVD1	ENSG00000165219.23	ENST00000497580.5:ENST00000461379.5:ENST00000297933.11:ENST00000394084.5:ENST00000470056.5:ENST00000394105.6:ENST00000394083.6:ENST00000495955.5:ENST00000467750.5:ENST00000394104.6:ENST00000312123.13	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	63	2	3.581	4.255145	4.92929	0.0098607	8.63544e-4	0.0838128	0.0266494
chr17	50392197	50392297	6795098	0	-	0.34	(0.32,0.35]	chr17	670744	4	SS5_PROX	SS5_PROX:INTRON	LRRC59	ENSG00000108829.10	ENST00000225972.8	protein_coding	protein_coding	protein_coding	protein_coding	5	120	2	1.99685	4.25514	6.51343	0.00667915	1.38261e-5	0.0738715	0.00295118
chr4	82368829	82368929	2177487	0	-	0.41	(0.408,0.44]	chr4	214146	88	INTRON	INTRON	HNRNPD	ENSG00000138668.19	ENST00000313899.12:ENST00000353341.8:ENST00000352301.8:ENST00000513584.1:ENST00000509263.5:ENST00000507010.5:ENST00000515432.1:ENST00000503822.1:ENST00000509107.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	85	2	2.64127	4.25503	5.86879	0.00125199	1.0135e-4	0.0328543	0.00906611
chr3	93972766	93972865	1754182	0	-	0.575758	(0.57,1]	chr3	177837	37	INTRON	INTRON	PROS1	ENSG00000184500.16	ENST00000394236.9:ENST00000648853.1:ENST00000650591.1:ENST00000348974.5:ENST00000647936.1:ENST00000407433.6:ENST00000649103.1:ENST00000472684.2:ENST00000648721.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	101	2	3.63336	4.254955	4.87655	1.24433e-6	5.14299e-8	6.49169e-4	9.0631e-5
chr12	122098661	122098761	5240061	0	+	0.47	(0.44,0.476]	chr12	497496	190	INTRON	INTRON	MLXIP	ENSG00000175727.14	ENST00000319080.12	protein_coding	protein_coding	protein_coding	protein_coding	1	53	2	3.3111	4.25495	5.1988	0.0020006	0.00151532	0.0412555	0.0352794
chr6	24711662	24711760	3070649	0	-	0.316327	(0.28,0.32]	chr6	285352	24	INTRON	INTRON	C6orf62	ENSG00000112308.13	ENST00000378119.9:ENST00000378102.3	protein_coding	protein_coding	protein_coding	protein_coding	2	90	2	2.53648	4.254815000000001	5.97315	0.00925866	5.56637e-5	0.0817766	0.0061014
chr1	1221649	1221748	358872	0	-	0.434343	(0.408,0.44]	chr1	41400	4	INTRON	INTRON	SDF4	ENSG00000078808.19	ENST00000660930.1:ENST00000465727.5:ENST00000263741.12:ENST00000360001.12:ENST00000403997.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	54	2	3.02513	4.254645	5.48416	0.0059965	5.43528e-4	0.0700606	0.0215026
chr6	30706788	30706883	3077854	0	-	0.431579	(0.408,0.44]	chr6	286465	3	INTRON	INTRON	MDC1	ENSG00000137337.16	ENST00000376406.8:ENST00000417033.1:ENST00000492462.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	54	2	3.02513	4.254645	5.48416	0.0059965	5.43528e-4	0.0700606	0.0215026
chr7	129619703	129619803	3412201	0	+	0.31	(0.28,0.32]	chr7	319009	75	INTRON	INTRON	NRF1	ENSG00000106459.15	ENST00000393232.6:ENST00000477428.5:ENST00000454688.5:ENST00000223190.8:ENST00000311967.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	84	2	3.11673	4.25454	5.39235	0.0024844	6.61685e-4	0.0446195	0.0232856
chr13	95156911	95157010	5638410	0	-	0.454545	(0.44,0.476]	chr13	537060	81	INTRON	INTRON	ABCC4	ENSG00000125257.16	ENST00000645237.2:ENST00000643051.1:ENST00000643842.1:ENST00000646439.1:ENST00000643816.1:ENST00000536256.3:ENST00000643556.1:ENST00000629385.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	57	2	3.26669	4.2544	5.24211	0.00305435	4.87398e-4	0.0493883	0.0199652
chr7	98880201	98880298	3359267	0	+	0.453608	(0.44,0.476]	chr7	313355	12	INTRON	INTRON	TRRAP	ENSG00000196367.14	ENST00000417523.5:ENST00000355540.7:ENST00000359863.8:ENST00000628380.2:ENST00000456197.2	protein_coding	protein_coding	protein_coding	protein_coding	1	57	2	3.26669	4.2544	5.24211	0.00305435	4.87398e-4	0.0493883	0.0199652
chr6	149517950	149518046	3245278	0	-	0.447917	(0.44,0.476]	chr6	301490	1	INTRON	INTRON	PPIL4	ENSG00000131013.4	ENST00000253329.3	protein_coding	protein_coding	protein_coding	protein_coding	2	72	2	3.15639	4.2543299999999995	5.35227	8.47974e-4	3.93757e-4	0.0267232	0.0178567
chr9	71865824	71865920	4265678	0	-	0.427083	(0.408,0.44]	chr9	392590	8	UTR3	UTR3:EXON_MRNA:INTRON	ABHD17B	ENSG00000107362.14	ENST00000377041.6:ENST00000333421.7	protein_coding	protein_coding	protein_coding	protein_coding	1	57	2	3.05705	4.25429	5.45153	0.00658331	1.89064e-4	0.0701901	0.0119565
chr7	76550826	76550919	3340375	0	+	0.430108	(0.408,0.44]	chr7	311164	6	INTRON	INTRON	ENSG00000205485	ENSG00000205485.13	ENST00000418663.5:ENST00000450661.1:ENST00000423084.1:ENST00000429707.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	1	57	2	3.10641	4.254245	5.40208	0.00555646	2.37882e-4	0.0648867	0.0136195
chr1	144022848	144022948	209335	0	+	0.37	(0.35,0.378]	chr1	22861	473	INTRON	INTRON	SRGAP2D	ENSG00000270872.2	ENST00000605551.2	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	0	27	2	3.94291	4.254205	4.5655	0.0374229	0.0155464	0.155878	0.100909
chr11	108179573	108179672	5034745	0	-	0.363636	(0.35,0.378]	chr11	474410	21	INTRON	INTRON	NPAT	ENSG00000149308.17	ENST00000278612.9:ENST00000610253.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	27	2	3.94291	4.254205	4.5655	0.0374229	0.0155464	0.155878	0.100909
chr15	22585163	22585262	5975461	0	+	0.353535	(0.35,0.378]	chr15	568243	51	INTRON	INTRON	HERC2P2	ENSG00000276550.5	ENST00000619021.4:ENST00000690192.1:ENST00000614571.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	27	2	3.94291	4.254205	4.5655	0.0374229	0.0155464	0.155878	0.100909
chr6	15328923	15329023	2823776	0	+	0.37	(0.35,0.378]	chr6	265192	140	INTRON	INTRON	JARID2	ENSG00000008083.14	ENST00000341776.7:ENST00000397311.4	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	3.94291	4.254205	4.5655	0.0374229	0.0155464	0.155878	0.100909
chr21	36337006	36337106	7403858	0	+	0.31	(0.28,0.32]	chr21	754289	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	MORC3	ENSG00000159256.13	ENST00000492336.5:ENST00000400485.6:ENST00000487909.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	82	2	2.91124	4.254195	5.59715	0.00165124	0.00123856	0.0375241	0.0322669
chr1	230113828	230113928	334545	0	+	0.45	(0.44,0.476]	chr1	38930	219	INTRON	INTRON	GALNT2	ENSG00000143641.10	ENST00000494106.1:ENST00000366672.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	55	2	2.89047	4.253985	5.6175	0.00955699	2.84938e-4	0.0863913	0.015495
chr8	94854708	94854806	3800446	0	+	0.540816	(0.515,0.57]	chr8	352406	4	INTRON	INTRON	INTS8	ENSG00000164941.14	ENST00000523731.6:ENST00000524333.5:ENST00000523321.5:ENST00000343161.8:ENST00000523206.5:ENST00000520526.5:ENST00000520845.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	49	2	3.12663	4.2536950000000004	5.38076	0.00374498	3.24968e-4	0.0562234	0.0165891
chr1	52851665	52851765	104995	0	+	0.24	[0,0.28]	chr1	13720	83	INTRON	INTRON	ZYG11A	ENSG00000203995.10	ENST00000371532.5:ENST00000612017.4:ENST00000371528.2	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	3.96122	4.25366	4.5461	0.0617993	0.0365918	0.193423	0.138959
chr1	212040111	212040210	307382	0	+	0.171717	[0,0.28]	chr1	35458	38	INTRON	INTRON	DTL	ENSG00000143476.18	ENST00000542077.5:ENST00000366991.5:ENST00000475419.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	29	2	3.96122	4.25366	4.5461	0.0617993	0.0365918	0.193423	0.138959
chr10	96071078	96071178	4673534	0	-	0.28	[0,0.28]	chr10	430643	278	INTRON	INTRON	ENTPD1-AS1	ENSG00000226688.8	ENST00000669711.1:ENST00000416301.5:ENST00000451364.5:ENST00000671323.1:ENST00000656604.1:ENST00000452728.5:ENST00000684888.1:ENST00000454638.5:ENST00000668038.1:ENST00000686747.1:ENST00000693608.1:ENST00000458228.5:ENST00000691417.1:ENST00000427846.1	lncRNA	lncRNA	lncRNA	lncRNA	0	29	2	3.96122	4.25366	4.5461	0.0617993	0.0365918	0.193423	0.138959
chr2	224522831	224522931	1335710	0	-	0.25	[0,0.28]	chr2	140141	77	INTRON	INTRON	CUL3	ENSG00000036257.14	ENST00000344951.8:ENST00000264414.9:ENST00000409096.5:ENST00000409777.5:ENST00000541548.5:ENST00000432260.2:ENST00000436172.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	29	2	3.96122	4.25366	4.5461	0.0617993	0.0365918	0.193423	0.138959
chr5	157788962	157789062	2757937	0	-	0.28	[0,0.28]	chr5	260240	2	SS5_PROX	SS5_PROX:INTRON	CLINT1	ENSG00000113282.14	ENST00000523094.5:ENST00000411809.7:ENST00000530742.5:ENST00000524306.1:ENST00000518855.5:ENST00000523908.5:ENST00000522381.1:ENST00000521047.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	29	2	3.96122	4.25366	4.5461	0.0617993	0.0365918	0.193423	0.138959
chr7	64926569	64926666	3321325	0	+	0.268041	[0,0.28]	chr7	308800	23	INTRON	INTRON	ZNF273	ENSG00000198039.12	ENST00000527278.5:ENST00000476120.2:ENST00000395375.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	29	2	3.96122	4.25366	4.5461	0.0617993	0.0365918	0.193423	0.138959
chr7	102370949	102371048	3371144	0	+	0.242424	[0,0.28]	chr7	315430	45	INTRON	INTRON	PRKRIP1:ENSG00000239969	ENSG00000128563.13:ENSG00000239969.6	ENST00000477886.5:ENST00000469763.5:ENST00000482549.5:ENST00000496391.5:ENST00000484974.5:ENST00000492837.1:ENST00000482465.5	protein_coding	protein_coding	protein_coding:transcribed_unprocessed_pseudogene	protein_coding:processed_transcript	0	29	2	3.96122	4.25366	4.5461	0.0617993	0.0365918	0.193423	0.138959
chr12	68654452	68654552	5161655	0	+	0.4	(0.378,0.408]	chr12	488621	2	SS5_PROX	SS5_PROX:INTRON	RAP1B	ENSG00000127314.18	ENST00000393436.9:ENST00000250559.14:ENST00000425247.6:ENST00000450214.6:ENST00000463493.5:ENST00000537460.5:ENST00000341355.9:ENST00000545270.5:ENST00000538980.5:ENST00000543393.5:ENST00000540209.5:ENST00000378985.7:ENST00000453560.6:ENST00000542145.5:ENST00000539091.5:ENST00000535492.5:ENST00000540781.5:ENST00000543697.5:ENST00000541216.1:ENST00000544639.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	26	2	3.98867	4.253605	4.51854	0.0507	0.00748824	0.156383	0.0772645
chr12	102317532	102317632	5206848	0	+	0.4	(0.378,0.408]	chr12	492881	1201	EXON_LNCRNA	EXON_LNCRNA:INTRON	HELLPAR:LINC02456	ENSG00000281344.1:ENSG00000283052.1	ENST00000626826.1:ENST00000635615.1	lncRNA	lncRNA	lncRNA	lncRNA	0	26	2	3.98867	4.253605	4.51854	0.0507	0.00748824	0.156383	0.0772645
chr13	100290526	100290626	5529567	0	+	0.39	(0.378,0.408]	chr13	528532	168	INTRON	INTRON	PCCA	ENSG00000175198.17	ENST00000376286.8:ENST00000376279.7:ENST00000376285.6:ENST00000647303.1:ENST00000637657.1:ENST00000636366.1:ENST00000636475.1:ENST00000636420.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	26	2	3.98867	4.253605	4.51854	0.0507	0.00748824	0.156383	0.0772645
chr15	92973695	92973793	6104454	0	+	0.397959	(0.378,0.408]	chr15	581512	9	INTRON	INTRON	CHD2	ENSG00000173575.22	ENST00000626874.2:ENST00000394196.9:ENST00000635856.1:ENST00000637572.1:ENST00000636881.1:ENST00000628118.1:ENST00000625463.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	26	2	3.98867	4.253605	4.51854	0.0507	0.00748824	0.156383	0.0772645
chr17	38895601	38895701	6606663	0	+	0.38	(0.378,0.408]	chr17	643201	47	INTRON	INTRON	LASP1	ENSG00000002834.18	ENST00000433206.6:ENST00000585841.5:ENST00000318008.11:ENST00000443937.7:ENST00000584106.1:ENST00000435347.7:ENST00000419929.1:ENST00000581485.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	26	2	3.98867	4.253605	4.51854	0.0507	0.00748824	0.156383	0.0772645
chr18	80134006	80134106	6938340	0	+	0.39	(0.378,0.408]	chr18	686207	2	SS5_PROX	SS5_PROX:INTRON	ADNP2	ENSG00000101544.9	ENST00000262198.9:ENST00000560752.5:ENST00000559951.5:ENST00000560561.1:ENST00000561195.1	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	3.98867	4.253605	4.51854	0.0507	0.00748824	0.156383	0.0772645
chr3	37055565	37055665	1655398	0	-	0.4	(0.378,0.408]	chr3	169878	4	SS3_PROX	SS3_PROX:INTRON	LRRFIP2	ENSG00000093167.18	ENST00000336686.9:ENST00000354379.8:ENST00000421276.6:ENST00000460646.5:ENST00000496479.5:ENST00000396428.6:ENST00000440230.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	26	2	3.98867	4.253605	4.51854	0.0507	0.00748824	0.156383	0.0772645
chr3	123112486	123112585	1489796	0	+	0.393939	(0.378,0.408]	chr3	155681	11	INTRON	INTRON	PDIA5	ENSG00000065485.20	ENST00000316218.12:ENST00000489923.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	26	2	3.98867	4.253605	4.51854	0.0507	0.00748824	0.156383	0.0772645
chr4	68344480	68344580	2154833	0	-	0.38	(0.378,0.408]	chr4	212289	4	SS3_PROX	SS3_PROX:INTRON	YTHDC1	ENSG00000083896.13	ENST00000344157.9:ENST00000355665.7:ENST00000579690.5:ENST00000510746.1	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	3.98867	4.253605	4.51854	0.0507	0.00748824	0.156383	0.0772645
chr4	159233321	159233420	2074806	0	+	0.393939	(0.378,0.408]	chr4	205198	34	INTRON	INTRON	RAPGEF2	ENSG00000109756.10	ENST00000644474.1:ENST00000691494.1:ENST00000505478.5:ENST00000504604.5:ENST00000503328.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	26	2	3.98867	4.253605	4.51854	0.0507	0.00748824	0.156383	0.0772645
chr7	158646359	158646459	3688178	0	-	0.4	(0.378,0.408]	chr7	342127	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	NCAPG2	ENSG00000146918.20	ENST00000356309.8:ENST00000432615.5:ENST00000409423.5:ENST00000441982.5:ENST00000467785.5:ENST00000409339.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	26	2	3.98867	4.253605	4.51854	0.0507	0.00748824	0.156383	0.0772645
chr9	100040036	100040136	4308054	0	-	0.39	(0.378,0.408]	chr9	395794	133	INTRON	INTRON	ERP44	ENSG00000023318.9	ENST00000262455.7:ENST00000685319.1:ENST00000691188.1:ENST00000687025.1:ENST00000687093.1:ENST00000690739.1:ENST00000687017.1:ENST00000690317.1:ENST00000691823.1:ENST00000686275.1:ENST00000689406.1:ENST00000684842.1:ENST00000688230.1:ENST00000685432.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	26	2	3.98867	4.253605	4.51854	0.0507	0.00748824	0.156383	0.0772645
chr9	123190894	123190994	4339700	0	-	0.39	(0.378,0.408]	chr9	398947	62	INTRON	INTRON	STRBP	ENSG00000165209.19	ENST00000348403.10:ENST00000360998.3:ENST00000407982.6:ENST00000479114.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	26	2	3.98867	4.253605	4.51854	0.0507	0.00748824	0.156383	0.0772645
chr9	137650065	137650163	4223786	0	+	0.408163	(0.378,0.408]	chr9	388164	33	INTRON	INTRON	EHMT1	ENSG00000181090.21	ENST00000462484.5:ENST00000371394.6:ENST00000630754.2:ENST00000460843.6:ENST00000626216.2:ENST00000629335.2:ENST00000637335.1:ENST00000636376.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	26	2	3.98867	4.253605	4.51854	0.0507	0.00748824	0.156383	0.0772645
chrX	135342352	135342450	7894910	0	-	0.397959	(0.378,0.408]	chrX	803690	7	UTR5	UTR5:EXON_MRNA:INTRON	ZNF75D	ENSG00000186376.15	ENST00000494295.1:ENST00000370766.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	26	2	3.98867	4.253605	4.51854	0.0507	0.00748824	0.156383	0.0772645
chr19	13759627	13759699	7023229	0	+	0.444444	(0.44,0.476]	chr19	698457	1	SS5_PROX	SS5_PROX:INTRON	YJU2B	ENSG00000104957.14	ENST00000586600.5:ENST00000593174.5:ENST00000221554.13:ENST00000586666.5:ENST00000587019.5:ENST00000585844.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	97	2	2.35576	4.2535799999999995	6.1514	0.00208591	2.2546e-5	0.0424672	0.00386909
chr16	70271192	70271280	6510307	0	-	0.454545	(0.44,0.476]	chr16	630579	5	INTRON	INTRON	AARS1	ENSG00000090861.17	ENST00000674963.1:ENST00000675643.1:ENST00000675917.1:ENST00000674691.1:ENST00000261772.13:ENST00000675569.1:ENST00000676209.1:ENST00000676211.1:ENST00000676040.1:ENST00000675953.1:ENST00000675691.1:ENST00000676004.1:ENST00000675270.1:ENST00000675403.1:ENST00000676212.1:ENST00000675045.1:ENST00000675035.1:ENST00000676168.1:ENST00000674652.1:ENST00000675133.1:ENST00000675120.1:ENST00000674811.1:ENST00000674512.1:ENST00000675853.1:ENST00000565361.3:ENST00000676247.1:ENST00000674848.1:ENST00000674962.1:ENST00000675371.1:ENST00000675986.1:ENST00000674768.1:ENST00000675297.1:ENST00000675751.1:ENST00000564359.6:ENST00000675338.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	80	2	3.60668	4.25334	4.9	0.00423315	3.22849e-5	0.0572185	0.00453487
chr7	76048866	76048956	3339660	0	+	0.4	(0.378,0.408]	chr7	310989	4	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	MDH2	ENSG00000146701.12	ENST00000461263.2:ENST00000443006.5:ENST00000315758.10:ENST00000461665.5:ENST00000432020.2:ENST00000490105.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	54	2	3.33026	4.253265	5.17627	0.00208234	0.00189824	0.0411801	0.0402736
chr2	70211130	70211229	1152065	0	-	0.383838	(0.378,0.408]	chr2	123027	18	UTR3	UTR3:EXON_MRNA:INTRON	C2orf42:TIA1	ENSG00000115998.8:ENSG00000116001.17	ENST00000470096.1:ENST00000415783.6:ENST00000433529.7:ENST00000282574.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	54	2	3.22599	4.25316	5.28033	0.00288652	0.00143651	0.0494641	0.0340925
chr10	37855495	37855595	4602578	0	-	0.45	(0.44,0.476]	chr10	423985	170	INTRON	INTRON	ZNF248	ENSG00000198105.16	ENST00000615949.6:ENST00000485560.5:ENST00000395867.8:ENST00000357328.8:ENST00000611278.4:ENST00000374648.7:ENST00000395873.7:ENST00000395874.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	53	2	3.36231	4.253045	5.14378	0.00184943	0.00161678	0.0388609	0.0369204
chr11	47844863	47844962	4952137	0	-	0.474747	(0.44,0.476]	chr11	464643	39	INTRON	INTRON	NUP160	ENSG00000030066.14	ENST00000694866.1:ENST00000378460.7:ENST00000530326.5:ENST00000528071.5:ENST00000528501.5:ENST00000526870.1:ENST00000694867.1:ENST00000529863.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	53	2	3.36231	4.253045	5.14378	0.00184943	0.00161678	0.0388609	0.0369204
chr4	75748173	75748273	1974746	0	+	0.46	(0.44,0.476]	chr4	197935	229	INTRON	INTRON	USO1	ENSG00000138768.15	ENST00000514213.7:ENST00000264904.8	protein_coding	protein_coding	protein_coding	protein_coding	1	53	2	3.36231	4.253045	5.14378	0.00184943	0.00161678	0.0388609	0.0369204
chr1	93315269	93315369	509101	0	-	0.46	(0.44,0.476]	chr1	59977	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	CCDC18-AS1	ENSG00000223745.8	ENST00000413606.5:ENST00000457025.5:ENST00000451302.6:ENST00000668257.1:ENST00000446528.6:ENST00000415150.5:ENST00000455474.5:ENST00000447577.5:ENST00000429859.5:ENST00000424517.3:ENST00000661111.1:ENST00000450843.5:ENST00000440778.5:ENST00000659026.1:ENST00000669506.1:ENST00000657560.1:ENST00000421202.6:ENST00000436200.2:ENST00000670231.1:ENST00000432741.5	lncRNA	lncRNA	lncRNA	lncRNA	2	76	2	2.67282	4.25295	5.83308	0.00433875	2.77366e-5	0.0579868	0.00415129
chr4	80071831	80071908	2170544	0	-	0.441558	(0.44,0.476]	chr4	213943	2	SS3_PROX	SS3_PROX:INTRON	ANTXR2	ENSG00000163297.18	ENST00000403729.7:ENST00000679571.1:ENST00000681710.1:ENST00000680913.1:ENST00000681115.1:ENST00000404191.5:ENST00000346652.10:ENST00000307333.7:ENST00000514959.1:ENST00000506286.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	101	2	2.84842	4.2528749999999995	5.65733	2.3957e-4	1.57183e-4	0.0142132	0.0107517
chr1	32149602	32149702	63870	0	+	0.28	[0,0.28]	chr1	8075	62	INTRON	INTRON	KPNA6	ENSG00000025800.14	ENST00000373625.8:ENST00000471599.5:ENST00000469790.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	72	2	2.89982	4.252865	5.60591	0.0158893	6.01442e-4	0.101453	0.0223465
chr3	47641670	47641769	1683646	0	-	0.232323	[0,0.28]	chr3	171996	25	INTRON	INTRON	SMARCC1	ENSG00000173473.11	ENST00000254480.10:ENST00000425518.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	72	2	2.89982	4.252865	5.60591	0.0158893	6.01442e-4	0.101453	0.0223465
chr1	145077444	145077544	539608	0	-	0.38	(0.378,0.408]	chr1	63315	819	INTRON	INTRON	SRGAP2B	ENSG00000196369.12	ENST00000612199.4:ENST00000641863.3:ENST00000619678.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	26	2	4.09379	4.25274	4.41169	0.023912	0.0199606	0.129075	0.109608
chr1	153835045	153835145	556886	0	-	0.4	(0.378,0.408]	chr1	65983	63	INTRON	INTRON	GATAD2B	ENSG00000143614.10	ENST00000368655.5:ENST00000634544.1:ENST00000634408.1:ENST00000634401.1:ENST00000634791.1:ENST00000636014.1:ENST00000637331.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	26	2	4.09379	4.25274	4.41169	0.023912	0.0199606	0.129075	0.109608
chr10	58277522	58277622	4435127	0	+	0.39	(0.378,0.408]	chr10	409073	2	SS5_PROX	SS5_PROX:INTRON	CISD1	ENSG00000122873.12	ENST00000333926.6:ENST00000464703.5:ENST00000489785.5:ENST00000488388.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	26	2	4.09379	4.25274	4.41169	0.023912	0.0199606	0.129075	0.109608
chr10	102354859	102354957	4513765	0	+	0.387755	(0.378,0.408]	chr10	415799	5	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	GBF1	ENSG00000107862.7	ENST00000676513.1:ENST00000676939.1:ENST00000677439.1:ENST00000677240.1:ENST00000677618.1:ENST00000679155.1:ENST00000679280.1:ENST00000678036.1:ENST00000678476.1:ENST00000678504.1:ENST00000677247.1:ENST00000677655.1:ENST00000678351.1:ENST00000679238.1:ENST00000677487.1:ENST00000677506.1:ENST00000678666.1:ENST00000676560.1:ENST00000673650.1:ENST00000674034.1:ENST00000369983.5:ENST00000679003.1:ENST00000678486.1:ENST00000676682.1:ENST00000676807.1:ENST00000676993.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	26	2	4.09379	4.25274	4.41169	0.023912	0.0199606	0.129075	0.109608
chr15	29704405	29704505	6124198	0	-	0.39	(0.378,0.408]	chr15	583437	1	SS3_PROX	SS3_PROX:INTRON	TJP1	ENSG00000104067.17	ENST00000346128.10:ENST00000614355.5:ENST00000400011.6:ENST00000356107.11:ENST00000677774.1:ENST00000400007.8:ENST00000545208.6	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.09379	4.25274	4.41169	0.023912	0.0199606	0.129075	0.109608
chr15	63507214	63507313	6041926	0	+	0.393939	(0.378,0.408]	chr15	575351	20	INTRON	INTRON	USP3	ENSG00000140455.17	ENST00000540797.5:ENST00000380324.8:ENST00000561442.5:ENST00000560070.5:ENST00000557884.5:ENST00000558157.5:ENST00000561326.5:ENST00000559873.5:ENST00000559192.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	26	2	4.09379	4.25274	4.41169	0.023912	0.0199606	0.129075	0.109608
chr16	71730879	71730978	6513652	0	-	0.40404	(0.378,0.408]	chr16	631052	20	UTR3	UTR3:EXON_MRNA	AP1G1	ENSG00000166747.13	ENST00000299980.9	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.09379	4.25274	4.41169	0.023912	0.0199606	0.129075	0.109608
chr18	21616635	21616735	6879196	0	+	0.4	(0.378,0.408]	chr18	681836	38	INTRON	INTRON	SNRPD1	ENSG00000167088.11	ENST00000300413.10:ENST00000579618.1:ENST00000582475.1	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.09379	4.25274	4.41169	0.023912	0.0199606	0.129075	0.109608
chr2	173364413	173364508	922499	0	+	0.389474	(0.378,0.408]	chr2	101548	5	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CDCA7	ENSG00000144354.15	ENST00000347703.7:ENST00000695912.1:ENST00000695913.1:ENST00000306721.8:ENST00000496441.5:ENST00000410019.3:ENST00000410101.7:ENST00000695914.1:ENST00000435616.5:ENST00000467411.5:ENST00000695901.1:ENST00000468359.1:ENST00000695911.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	26	2	4.09379	4.25274	4.41169	0.023912	0.0199606	0.129075	0.109608
chr7	5919753	5919848	3272789	0	+	0.389474	(0.378,0.408]	chr7	304242	10	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	CCZ1	ENSG00000122674.12	ENST00000325974.9:ENST00000628813.2:ENST00000474507.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	26	2	4.09379	4.25274	4.41169	0.023912	0.0199606	0.129075	0.109608
chr7	98960278	98960375	3360117	0	+	0.381443	(0.378,0.408]	chr7	313594	4	INTRON	INTRON	TRRAP	ENSG00000196367.14	ENST00000355540.7:ENST00000359863.8:ENST00000628380.2:ENST00000456197.2:ENST00000446306.7	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.09379	4.25274	4.41169	0.023912	0.0199606	0.129075	0.109608
chr7	107563302	107563402	3613026	0	-	0.4	(0.378,0.408]	chr7	336729	1	SS5_PROX	SS5_PROX:INTRON	COG5	ENSG00000164597.15	ENST00000297135.9:ENST00000347053.8:ENST00000393603.7:ENST00000605888.1	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.09379	4.25274	4.41169	0.023912	0.0199606	0.129075	0.109608
chr7	140872498	140872597	3663211	0	-	0.393939	(0.378,0.408]	chr7	340105	219	INTRON	INTRON	BRAF	ENSG00000157764.14	ENST00000496384.7:ENST00000644969.2:ENST00000646891.1:ENST00000644905.1:ENST00000642228.1:ENST00000288602.11:ENST00000646730.1:ENST00000497784.2:ENST00000642272.1:ENST00000642808.1:ENST00000643790.1:ENST00000469930.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	26	2	4.09379	4.25274	4.41169	0.023912	0.0199606	0.129075	0.109608
chr7	149284596	149284694	3446051	0	+	0.408163	(0.378,0.408]	chr7	321470	24	UTR3	UTR3:EXON_MRNA:INTRON	ZNF783	ENSG00000204946.10	ENST00000378052.5:ENST00000434415.6:ENST00000476295.5:ENST00000481519.5:ENST00000489518.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	26	2	4.09379	4.25274	4.41169	0.023912	0.0199606	0.129075	0.109608
chrX	48931294	48931393	7815806	0	-	0.383838	(0.378,0.408]	chrX	796844	49	INTRON	INTRON	OTUD5	ENSG00000068308.15	ENST00000376488.8:ENST00000396743.7:ENST00000455452.5:ENST00000156084.8:ENST00000428668.2:ENST00000484499.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	26	2	4.09379	4.25274	4.41169	0.023912	0.0199606	0.129075	0.109608
chr2	108790855	108790954	848152	0	+	0.424242	(0.408,0.44]	chr2	94950	15	INTRON	INTRON	CCDC138	ENSG00000163006.12	ENST00000412964.6:ENST00000409529.6:ENST00000295124.9:ENST00000470608.1:ENST00000447782.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	53	2	3.31257	4.252295	5.19202	0.00198621	0.0016671	0.0411469	0.0369207
chr2	131083356	131083455	1228992	0	-	0.40404	(0.378,0.408]	chr2	130994	3	INTRON	INTRON	FAM168B	ENSG00000152102.18	ENST00000389915.4:ENST00000409185.5	protein_coding	protein_coding	protein_coding	protein_coding	1	55	2	3.56208	4.25229	4.9425	0.00452675	6.94246e-4	0.0595107	0.0240761
chr20	34470520	34470620	7260206	0	+	0.27	[0,0.28]	chr20	737523	4	SS5_PROX	SS5_PROX:INTRON	ITCH	ENSG00000078747.16	ENST00000374864.10:ENST00000535650.7:ENST00000670516.1:ENST00000665484.1:ENST00000664852.1:ENST00000660337.1:ENST00000262650.10:ENST00000665346.1:ENST00000483727.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	119	2	2.29727	4.25217	6.20707	0.0103431	4.38815e-5	0.0850389	0.00536299
chr10	21619894	21619993	4405278	0	+	0.414141	(0.408,0.44]	chr10	406483	23	INTRON	INTRON	MLLT10	ENSG00000078403.17	ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000651298.1:ENST00000377059.7:ENST00000652258.1:ENST00000651382.1:ENST00000438473.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	129	2	2.33163	4.25189	6.17215	4.88329e-4	2.28416e-5	0.0199693	0.00389868
chr10	92481893	92481989	4664465	0	-	0.333333	(0.32,0.35]	chr10	429799	6	INTRON	INTRON	IDE	ENSG00000119912.18	ENST00000265986.11:ENST00000679312.1:ENST00000650060.1:ENST00000371581.9:ENST00000679089.1:ENST00000677569.1:ENST00000677096.1:ENST00000679222.1:ENST00000676540.1:ENST00000678026.1:ENST00000676626.1:ENST00000679069.1:ENST00000678977.1:ENST00000679232.1:ENST00000678844.1:ENST00000679174.1:ENST00000678673.1:ENST00000676816.1:ENST00000678715.1:ENST00000678458.1:ENST00000677193.1:ENST00000679304.1:ENST00000676987.1:ENST00000677079.1:ENST00000677434.1:ENST00000678824.1:ENST00000496903.5:ENST00000678248.1:ENST00000678410.1:ENST00000478361.6:ENST00000492362.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	58	2	3.3721	4.251665	5.13123	0.00394704	0.00182912	0.0548259	0.0396683
chr12	62585663	62585745	5152390	0	+	0.329268	(0.32,0.35]	chr12	487639	3	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	MON2	ENSG00000061987.16	ENST00000641654.1:ENST00000546600.5:ENST00000393630.8:ENST00000547095.5:ENST00000552738.5:ENST00000393629.6:ENST00000551307.5:ENST00000546751.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	58	2	3.3721	4.251665	5.13123	0.00394704	0.00182912	0.0548259	0.0396683
chr9	111383532	111383632	4314245	0	-	0.35	(0.32,0.35]	chr9	396657	2	SS3_PROX	SS3_PROX:INTRON	ECPAS	ENSG00000136813.15	ENST00000684092.1:ENST00000338205.9:ENST00000259335.8	protein_coding	protein_coding	protein_coding	protein_coding	1	58	2	3.3721	4.251665	5.13123	0.00394704	0.00182912	0.0548259	0.0396683
chr9	130117251	130117351	4211604	0	+	0.34	(0.32,0.35]	chr9	386081	22	INTRON	INTRON	GPR107	ENSG00000148358.20	ENST00000372406.5:ENST00000372410.7:ENST00000347136.11:ENST00000493417.5:ENST00000610997.1:ENST00000483935.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	58	2	3.3721	4.251665	5.13123	0.00394704	0.00182912	0.0548259	0.0396683
chr15	92894249	92894348	6103622	0	+	0.272727	[0,0.28]	chr15	581375	18	INTRON	INTRON	CHASERR:ENSG00000279765	ENSG00000272888.8:ENSG00000279765.3	ENST00000653163.1:ENST00000557682.6:ENST00000556895.5:ENST00000629685.2:ENST00000554133.5:ENST00000630790.1:ENST00000555520.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	1	73	2	3.81056	4.251235	4.69191	0.0269474	4.09492e-4	0.123442	0.0181306
chr16	85592027	85592127	6415752	0	+	0.63	(0.57,1]	chr16	615470	353	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	1	37	2	3.6291	4.251215	4.87333	3.21412e-4	3.02868e-4	0.0160895	0.0159645
chr10	63173420	63173519	4632431	0	-	0.50505	(0.476,0.515]	chr10	426101	45	INTRON	INTRON	JMJD1C	ENSG00000171988.20	ENST00000467356.5:ENST00000399262.7:ENST00000402544.5:ENST00000542921.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	26	2	3.97201	4.25112	4.53023	0.030904	0.0119748	0.143385	0.0899583
chr2	10137975	10138074	690876	0	+	0.515152	(0.476,0.515]	chr2	81087	67	INTRON	INTRON	RRM2	ENSG00000171848.16	ENST00000641498.1:ENST00000646978.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	0	26	2	3.97201	4.25112	4.53023	0.030904	0.0119748	0.143385	0.0899583
chr2	183185934	183186033	938939	0	+	0.494949	(0.476,0.515]	chr2	103032	29	INTRON	INTRON	ENSG00000272800	ENSG00000272800.3	ENST00000661621.1:ENST00000608537.2	lncRNA	lncRNA	lncRNA	lncRNA	0	26	2	3.97201	4.25112	4.53023	0.030904	0.0119748	0.143385	0.0899583
chr21	18736223	18736323	7435165	0	-	0.5	(0.476,0.515]	chr21	758112	1236	INTRON	INTRON	MIR548XHG	ENSG00000224141.6	ENST00000671206.1:ENST00000437492.6:ENST00000355189.7:ENST00000653218.1:ENST00000656413.1:ENST00000414582.1	lncRNA	lncRNA	lncRNA	lncRNA	0	26	2	3.97201	4.25112	4.53023	0.030904	0.0119748	0.143385	0.0899583
chr22	17759149	17759249	7548085	0	-	0.51	(0.476,0.515]	chr22	771498	86	INTRON	INTRON	BID	ENSG00000015475.19	ENST00000622694.5:ENST00000317361.11:ENST00000614949.4:ENST00000399765.5:ENST00000399767.6:ENST00000342111.9:ENST00000551952.5:ENST00000550946.5:ENST00000473439.5:ENST00000552886.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	26	2	3.97201	4.25112	4.53023	0.030904	0.0119748	0.143385	0.0899583
chr3	128792957	128793056	1497879	0	+	0.50505	(0.476,0.515]	chr3	156336	35	INTRON	INTRON	RAB7A	ENSG00000075785.14	ENST00000676214.1:ENST00000675864.1:ENST00000675712.1:ENST00000676425.1:ENST00000490093.6:ENST00000675342.1:ENST00000265062.8:ENST00000674748.1:ENST00000493186.6:ENST00000482525.5:ENST00000491681.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	26	2	3.97201	4.25112	4.53023	0.030904	0.0119748	0.143385	0.0899583
chr5	128040747	128040847	2715876	0	-	0.5	(0.476,0.515]	chr5	255356	161	INTRON	INTRON	SLC12A2-DT	ENSG00000245937.9	ENST00000499346.7:ENST00000514409.6:ENST00000661296.1:ENST00000657475.2:ENST00000689029.1:ENST00000687795.1:ENST00000661552.2:ENST00000660408.1:ENST00000501652.5:ENST00000501173.6:ENST00000514573.5:ENST00000508353.5:ENST00000660180.1:ENST00000665302.1:ENST00000659990.1:ENST00000665599.1:ENST00000501702.7:ENST00000668567.1:ENST00000657683.1:ENST00000668265.1:ENST00000659415.1:ENST00000508878.5	lncRNA	lncRNA	lncRNA	lncRNA	0	26	2	3.97201	4.25112	4.53023	0.030904	0.0119748	0.143385	0.0899583
chr7	101839862	101839962	3366587	0	+	0.51	(0.476,0.515]	chr7	315215	205	INTRON	INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000497815.5:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000607092.1:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000558469.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	26	2	3.97201	4.25112	4.53023	0.030904	0.0119748	0.143385	0.0899583
chr1	50559090	50559190	448229	0	-	0.51	(0.476,0.515]	chr1	54189	190	INTRON	INTRON	FAF1	ENSG00000185104.21	ENST00000396153.7:ENST00000494400.5:ENST00000472808.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	53	2	3.35059	4.25101	5.15143	0.00171515	0.00166579	0.0381936	0.0369207
chr16	30718171	30718270	6338854	0	+	0.515152	(0.476,0.515]	chr16	607790	13	INTRON	INTRON	SRCAP	ENSG00000080603.17	ENST00000262518.9:ENST00000395059.6:ENST00000483083.3	protein_coding	protein_coding	protein_coding	protein_coding	1	53	2	3.35059	4.25101	5.15143	0.00171515	0.00166579	0.0381936	0.0369207
chr10	107023876	107023976	4689869	0	-	0.35	(0.32,0.35]	chr10	432765	669	INTRON	INTRON	SORCS1	ENSG00000108018.16	ENST00000263054.11	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	3.94529	4.25095	4.55661	0.0693433	0.00927858	0.184298	0.0855292
chr12	10374336	10374436	5076305	0	+	0.35	(0.32,0.35]	chr12	480021	2	SS5_PROX	SS5_PROX:INTRON	KLRK1-AS1	ENSG00000245648.2	ENST00000663376.1:ENST00000666750.1:ENST00000500682.1:ENST00000654540.1:ENST00000671087.1	lncRNA	lncRNA	lncRNA	lncRNA	0	27	2	3.94529	4.25095	4.55661	0.0693433	0.00927858	0.184298	0.0855292
chr14	91132394	91132493	5805846	0	+	0.333333	(0.32,0.35]	chr14	550157	31	INTRON	INTRON	DGLUCY	ENSG00000133943.21	ENST00000521334.5:ENST00000522837.5:ENST00000518871.5:ENST00000520328.5:ENST00000521081.5:ENST00000524232.5:ENST00000522170.5:ENST00000256324.15:ENST00000519950.5:ENST00000523879.5:ENST00000521077.6:ENST00000518665.6:ENST00000519994.5:ENST00000523837.5:ENST00000518868.5:ENST00000518649.5:ENST00000519019.5:ENST00000523816.5:ENST00000517518.5:ENST00000428926.6:ENST00000517362.5:ENST00000523894.5:ENST00000522322.5:ENST00000523771.5:ENST00000521064.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	27	2	3.94529	4.25095	4.55661	0.0693433	0.00927858	0.184298	0.0855292
chr16	12097482	12097582	6292536	0	+	0.35	(0.32,0.35]	chr16	602422	182	INTRON	INTRON	SNX29	ENSG00000048471.14	ENST00000566228.6:ENST00000563308.1	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	3.94529	4.25095	4.55661	0.0693433	0.00927858	0.184298	0.0855292
chr17	19240023	19240123	6570763	0	+	0.34	(0.32,0.35]	chr17	638928	21	INTRON	INTRON	EPN2	ENSG00000072134.16	ENST00000582015.5:ENST00000584707.5:ENST00000584633.1:ENST00000441293.2:ENST00000314728.10:ENST00000347697.6:ENST00000395618.7:ENST00000580579.5:ENST00000577692.5:ENST00000583197.5:ENST00000582659.5:ENST00000395628.6:ENST00000575595.5:ENST00000494192.6:ENST00000582234.5:ENST00000581024.5:ENST00000577244.5:ENST00000582969.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	27	2	3.94529	4.25095	4.55661	0.0693433	0.00927858	0.184298	0.0855292
chr17	64574235	64574333	6816244	0	-	0.336735	(0.32,0.35]	chr17	673902	19	INTRON	INTRON	SMURF2	ENSG00000108854.16	ENST00000262435.14:ENST00000582081.5:ENST00000578386.5:ENST00000585301.1:ENST00000578200.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	27	2	3.94529	4.25095	4.55661	0.0693433	0.00927858	0.184298	0.0855292
chr2	23879253	23879351	1080468	0	-	0.346939	(0.32,0.35]	chr2	115333	30	INTRON	INTRON	ATAD2B	ENSG00000119778.15	ENST00000238789.10:ENST00000439915.1	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	3.94529	4.25095	4.55661	0.0693433	0.00927858	0.184298	0.0855292
chr4	150940057	150940157	2271019	0	-	0.34	(0.32,0.35]	chr4	220921	106	INTRON	INTRON	LRBA	ENSG00000198589.14	ENST00000357115.9:ENST00000651943.2:ENST00000510413.5:ENST00000651035.1:ENST00000507224.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	27	2	3.94529	4.25095	4.55661	0.0693433	0.00927858	0.184298	0.0855292
chr7	6735889	6735987	3274141	0	+	0.336735	(0.32,0.35]	chr7	304518	1	INTRON	INTRON	PMS2CL	ENSG00000187953.10	ENST00000486256.5:ENST00000403974.6	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	27	2	3.94529	4.25095	4.55661	0.0693433	0.00927858	0.184298	0.0855292
chr8	42170411	42170507	3742924	0	+	0.34375	(0.32,0.35]	chr8	348054	15	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	AP3M2	ENSG00000070718.12	ENST00000174653.3:ENST00000518421.5:ENST00000396926.8:ENST00000520689.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	27	2	3.94529	4.25095	4.55661	0.0693433	0.00927858	0.184298	0.0855292
chr8	61625187	61625286	3958189	0	-	0.343434	(0.32,0.35]	chr8	363079	16	UTR3	UTR3:EXON_MRNA:INTRON	ASPH	ENSG00000198363.18	ENST00000379454.9:ENST00000541428.5:ENST00000524173.5:ENST00000521499.5:ENST00000522349.5:ENST00000523897.5:ENST00000523927.5:ENST00000522919.5:ENST00000445642.6:ENST00000356457.9:ENST00000519234.5:ENST00000518068.5:ENST00000517903.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	27	2	3.94529	4.25095	4.55661	0.0693433	0.00927858	0.184298	0.0855292
chr9	5001695	5001795	4095987	0	+	0.35	(0.32,0.35]	chr9	373235	153	INTRON	INTRON	JAK2	ENSG00000096968.14	ENST00000636127.1:ENST00000476574.5:ENST00000381652.4	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	3.94529	4.25095	4.55661	0.0693433	0.00927858	0.184298	0.0855292
chrX	73829828	73829926	7837818	0	-	0.336735	(0.32,0.35]	chrX	799592	2	INTRON	INTRON	XIST	ENSG00000229807.13	ENST00000669898.1:ENST00000650627.1:ENST00000434839.3:ENST00000421322.3:ENST00000429829.6:ENST00000648829.1:ENST00000647913.2:ENST00000647696.1:ENST00000650366.1:ENST00000648607.1:ENST00000650548.1:ENST00000650186.1:ENST00000635841.2:ENST00000650637.1:ENST00000648970.1:ENST00000648991.1:ENST00000648091.1:ENST00000648927.2:ENST00000649353.1:ENST00000666309.1:ENST00000665247.1:ENST00000602587.5:ENST00000445814.2:ENST00000602495.1	lncRNA	lncRNA	lncRNA	lncRNA	0	27	2	3.94529	4.25095	4.55661	0.0693433	0.00927858	0.184298	0.0855292
chr11	70283156	70283255	4820535	0	+	0.262626	[0,0.28]	chr11	449381	104	INTRON	INTRON	PPFIA1	ENSG00000131626.19	ENST00000253925.12:ENST00000389547.7:ENST00000532504.5:ENST00000530746.1:ENST00000532024.1:ENST00000648755.1:ENST00000644155.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	72	2	2.81922	4.250785	5.68235	0.0197411	4.43841e-4	0.109608	0.0190552
chr6	2969978	2970075	3047717	0	-	0.474227	(0.44,0.476]	chr6	283599	13	UTR5	UTR5:EXON_MRNA:INTRON	SERPINB6	ENSG00000124570.21	ENST00000643098.1:ENST00000380546.7:ENST00000380539.7:ENST00000380529.5:ENST00000649845.1:ENST00000644178.1:ENST00000612421.3:ENST00000616722.4:ENST00000642543.1:ENST00000644388.1:ENST00000380520.6:ENST00000645580.1:ENST00000644693.1:ENST00000646775.1:ENST00000645421.1:ENST00000643227.1:ENST00000646688.1:ENST00000644777.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	235	2	3.2479	4.250745	5.25359	4.89401e-6	6.78535e-8	0.00150861	1.10872e-4
chr17	80760989	80761089	6686955	0	+	0.26	[0,0.28]	chr17	653441	60	INTRON	INTRON	RPTOR	ENSG00000141564.15	ENST00000574767.5:ENST00000577161.5:ENST00000306801.8:ENST00000570891.5:ENST00000544334.6:ENST00000575542.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	72	2	2.97616	4.250675	5.52519	0.0128425	8.21427e-4	0.0926667	0.0261674
chr13	114004532	114004632	5653571	0	-	0.61	(0.57,1]	chr13	538850	32	INTRON	INTRON	RASA3	ENSG00000185989.11	ENST00000334062.8	protein_coding	protein_coding	protein_coding	protein_coding	5	70	2	2.68085	4.250645	5.82044	1.14119e-4	1.81133e-6	0.0091431	9.08125e-4
chr22	16651616	16651715	7473869	0	+	0.525253	(0.515,0.57]	chr22	762026	32	EXON_LNCRNA	EXON_LNCRNA:INTRON	TPTEP1	ENSG00000100181.22	ENST00000558085.6:ENST00000426585.5:ENST00000383140.7:ENST00000415121.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	3	77	2	2.61581	4.25036	5.88491	0.00127505	2.75856e-5	0.0331722	0.00430942
chr16	89486939	89487039	6543566	0	-	0.43	(0.408,0.44]	chr16	634281	553	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	85	2	2.5027	4.25029	5.99788	0.00238178	5.47233e-5	0.0449397	0.00651589
chr12	57781044	57781144	5148684	0	+	0.44	(0.408,0.44]	chr12	487159	5	UTR3	UTR3:EXON_MRNA	EEF1AKMT3	ENSG00000123427.17	ENST00000300209.13:ENST00000333012.5	protein_coding	protein_coding	protein_coding	protein_coding	1	53	2	3.20437	4.250245	5.29612	0.00306596	0.00113523	0.0509893	0.0307488
chr1	99708207	99708305	514735	0	-	0.295918	(0.28,0.32]	chr1	60320	44	UTR3	UTR3:EXON_MRNA	FRRS1	ENSG00000156869.14	ENST00000646001.2	protein_coding	protein_coding	protein_coding	protein_coding	4	234	2	3.87822	4.250235	4.62225	1.26337e-5	1.73327e-6	0.00281675	7.91759e-4
chr8	47951720	47951820	3945675	0	-	0.29	(0.28,0.32]	chr8	361951	73	INTRON	INTRON	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7	protein_coding	protein_coding	protein_coding	protein_coding	1	67	2	3.19774	4.250135	5.30253	0.00548491	0.0010319	0.0648867	0.0294094
chr1	58666031	58666131	467472	0	-	0.34	(0.32,0.35]	chr1	56409	4	SS3_PROX	SS3_PROX:INTRON	MYSM1	ENSG00000162601.11	ENST00000655340.1:ENST00000493821.6:ENST00000472487.6:ENST00000622766.1:ENST00000665648.1:ENST00000659812.1:ENST00000659108.1:ENST00000401044.7:ENST00000660611.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	27	2	4.04364	4.2499649999999995	4.45629	0.034181	0.0246089	0.146815	0.12011
chr13	51446418	51446518	5595985	0	-	0.34	(0.32,0.35]	chr13	534843	101	UTR3	UTR3:EXON_MRNA:INTRON	INTS6	ENSG00000102786.15	ENST00000398119.6:ENST00000311234.9:ENST00000469430.5:ENST00000486195.6:ENST00000491189.5:ENST00000491723.5:ENST00000461515.5:ENST00000491997.2:ENST00000488009.1:ENST00000485178.5:ENST00000483288.5:ENST00000442263.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	27	2	4.04364	4.2499649999999995	4.45629	0.034181	0.0246089	0.146815	0.12011
chr18	35475298	35475398	6962445	0	-	0.35	(0.32,0.35]	chr18	688971	62	INTRON	INTRON	INO80C	ENSG00000153391.16	ENST00000592173.5:ENST00000334598.12:ENST00000590757.1:ENST00000441607.6:ENST00000586489.5:ENST00000587450.1:ENST00000591139.1	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.04364	4.2499649999999995	4.45629	0.034181	0.0246089	0.146815	0.12011
chr19	52317315	52317415	7095167	0	+	0.34	(0.32,0.35]	chr19	711326	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	ZNF480	ENSG00000198464.14	ENST00000595962.6:ENST00000468240.6:ENST00000490272.1:ENST00000334564.11:ENST00000598016.5:ENST00000335090.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	27	2	4.04364	4.2499649999999995	4.45629	0.034181	0.0246089	0.146815	0.12011
chr2	32589010	32589110	733187	0	+	0.35	(0.32,0.35]	chr2	84656	133	INTRON	INTRON	BIRC6	ENSG00000115760.15	ENST00000421745.7:ENST00000471232.5:ENST00000470250.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	27	2	4.04364	4.2499649999999995	4.45629	0.034181	0.0246089	0.146815	0.12011
chr20	47235135	47235233	7348281	0	-	0.326531	(0.32,0.35]	chr20	749259	50	INTRON	INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000467200.6:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.04364	4.2499649999999995	4.45629	0.034181	0.0246089	0.146815	0.12011
chr3	71356189	71356288	1742878	0	-	0.333333	(0.32,0.35]	chr3	177310	206	INTRON	INTRON	FOXP1	ENSG00000114861.24	ENST00000318789.11:ENST00000649528.3:ENST00000615603.5:ENST00000493089.7:ENST00000649596.1:ENST00000648710.2:ENST00000327590.9:ENST00000648321.1:ENST00000649610.2:ENST00000648718.1:ENST00000649631.1:ENST00000648384.1:ENST00000648380.1:ENST00000650068.2:ENST00000650295.1:ENST00000648895.1:ENST00000318779.7:ENST00000471386.3:ENST00000648783.1:ENST00000650156.1:ENST00000649133.1:ENST00000493010.2:ENST00000649145.1:ENST00000648192.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	27	2	4.04364	4.2499649999999995	4.45629	0.034181	0.0246089	0.146815	0.12011
chr6	140487856	140487956	2971335	0	+	0.33	(0.32,0.35]	chr6	279019	1724	INTRON	INTRON	ENSG00000288714	ENSG00000288714.1	ENST00000684511.1	lncRNA	lncRNA	lncRNA	lncRNA	0	27	2	4.04364	4.2499649999999995	4.45629	0.034181	0.0246089	0.146815	0.12011
chr7	92770003	92770103	3572594	0	-	0.34	(0.32,0.35]	chr7	332804	439	INTRON	INTRON	CDK6	ENSG00000105810.10	ENST00000424848.3:ENST00000265734.8	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.04364	4.2499649999999995	4.45629	0.034181	0.0246089	0.146815	0.12011
chr8	67181317	67181416	3777858	0	+	0.333333	(0.32,0.35]	chr8	350468	10	INTRON	INTRON	CSPP1	ENSG00000104218.16	ENST00000676113.1:ENST00000675306.2:ENST00000262210.11:ENST00000678017.1:ENST00000675869.1:ENST00000678542.1:ENST00000677619.1:ENST00000676605.1:ENST00000676471.1:ENST00000677256.1:ENST00000676847.1:ENST00000677009.1:ENST00000676317.1:ENST00000677592.1:ENST00000676573.1:ENST00000678318.1:ENST00000677473.1:ENST00000674993.1:ENST00000679226.1:ENST00000676882.1:ENST00000675955.1:ENST00000677430.1:ENST00000678616.1:ENST00000679112.1:ENST00000678645.1:ENST00000677845.1:ENST00000676858.1:ENST00000678747.1:ENST00000519668.1:ENST00000677855.1:ENST00000677052.1:ENST00000679274.1:ENST00000678635.1:ENST00000676804.1:ENST00000679295.1:ENST00000677964.1:ENST00000676968.1:ENST00000678895.1:ENST00000678723.1:ENST00000677131.1:ENST00000521324.3:ENST00000675990.1:ENST00000521168.5:ENST00000677697.1:ENST00000677538.1:ENST00000679060.1:ENST00000676980.1:ENST00000678834.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	27	2	4.04364	4.2499649999999995	4.45629	0.034181	0.0246089	0.146815	0.12011
chrX	139869060	139869160	7905265	0	-	0.34	(0.32,0.35]	chrX	804457	369	INTRON	INTRON	ATP11C	ENSG00000101974.15	ENST00000370557.5:ENST00000682941.1:ENST00000485626.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	27	2	4.04364	4.2499649999999995	4.45629	0.034181	0.0246089	0.146815	0.12011
chr2	151411638	151411738	893222	0	+	0.5	(0.476,0.515]	chr2	98877	3	SS5_PROX	SS5_PROX:INTRON	RIF1	ENSG00000080345.18	ENST00000453091.6:ENST00000428287.6:ENST00000494333.1:ENST00000444746.7:ENST00000243326.9:ENST00000414861.6:ENST00000430328.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	56	2	3.10264	4.249865	5.39709	0.00543163	2.55871e-4	0.0645052	0.0142249
chr7	23373643	23373743	3502692	0	-	0.35	(0.32,0.35]	chr7	326877	106	INTRON	INTRON	IGF2BP3	ENSG00000136231.14	ENST00000258729.8:ENST00000421467.6:ENST00000468263.5:ENST00000492771.5:ENST00000479504.5:ENST00000466809.6:ENST00000491719.5:ENST00000465058.5:ENST00000469723.5:ENST00000474105.5:ENST00000476938.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	85	2	2.69421	4.2498000000000005	5.80539	0.00484681	7.5134e-5	0.0605691	0.00725287
chr10	74248328	74248428	4456742	0	+	0.45	(0.44,0.476]	chr10	411553	49	INTRON	INTRON	ADK	ENSG00000156110.15	ENST00000672429.1:ENST00000539909.6:ENST00000286621.7:ENST00000673352.1:ENST00000673310.1:ENST00000672920.1:ENST00000672394.1:ENST00000372734.5:ENST00000673027.1:ENST00000541550.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	85	2	2.46422	4.249755	6.03529	0.00282908	4.06961e-5	0.0491595	0.00539487
chrY	11202861	11202960	7930041	0	-	0.585859	(0.57,1]	chrY	807176	394	INTRON	INTRON	ENSG00000278212	ENSG00000278212.3	ENST00000652671.1:ENST00000651211.2:ENST00000687423.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	4	111	2	4.18202	4.249615	4.31721	1.64154e-7	5.92332e-8	1.8594e-4	1.00155e-4
chr21	21152068	21152168	7380530	0	+	0.37	(0.35,0.378]	chr21	752602	1531	INTRON	INTRON	NCAM2	ENSG00000154654.15	ENST00000400546.6	protein_coding	protein_coding	protein_coding	protein_coding	1	62	2	3.40851	4.249515	5.09052	0.00205747	0.00123501	0.0409869	0.0326215
chr1	11234565	11234665	378245	0	-	0.45	(0.44,0.476]	chr1	44316	3	SS3_PROX	SS3_PROX:INTRON	MTOR	ENSG00000198793.13	ENST00000361445.9	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	3.97626	4.24948	4.5227	0.0300538	0.0128818	0.142135	0.0926667
chr1	225049314	225049413	323573	0	+	0.444444	(0.44,0.476]	chr1	37204	50	INTRON	INTRON	DNAH14	ENSG00000185842.16	ENST00000445597.6:ENST00000430092.5:ENST00000682510.1:ENST00000439375.6	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	3.97626	4.24948	4.5227	0.0300538	0.0128818	0.142135	0.0926667
chr14	91127798	91127893	5805799	0	+	0.442105	(0.44,0.476]	chr14	550151	14	INTRON	INTRON	DGLUCY	ENSG00000133943.21	ENST00000521334.5:ENST00000522837.5:ENST00000518871.5:ENST00000520328.5:ENST00000521081.5:ENST00000524232.5:ENST00000522170.5:ENST00000256324.15:ENST00000519950.5:ENST00000523879.5:ENST00000521077.6:ENST00000518665.6:ENST00000519994.5:ENST00000523837.5:ENST00000518868.5:ENST00000518649.5:ENST00000519019.5:ENST00000523816.5:ENST00000517518.5:ENST00000428926.6:ENST00000517362.5:ENST00000523894.5:ENST00000522322.5:ENST00000523771.5:ENST00000521064.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	26	2	3.97626	4.24948	4.5227	0.0300538	0.0128818	0.142135	0.0926667
chr16	30394032	30394131	6337268	0	+	0.474747	(0.44,0.476]	chr16	607351	153	INTRON	INTRON	ZNF48	ENSG00000180035.13	ENST00000495929.3:ENST00000528032.5:ENST00000622647.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	26	2	3.97626	4.24948	4.5227	0.0300538	0.0128818	0.142135	0.0926667
chr16	88917078	88917177	6540696	0	-	0.454545	(0.44,0.476]	chr16	634096	147	INTRON	INTRON	CBFA2T3	ENSG00000129993.15	ENST00000268679.9:ENST00000327483.9:ENST00000569464.5:ENST00000569443.5:ENST00000563640.1:ENST00000564416.1:ENST00000570046.1	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	3.97626	4.24948	4.5227	0.0300538	0.0128818	0.142135	0.0926667
chr18	46106006	46106105	6898831	0	+	0.444444	(0.44,0.476]	chr18	683533	2	INTRON	INTRON	HAUS1	ENSG00000152240.13	ENST00000592471.1:ENST00000591098.1:ENST00000282058.11:ENST00000586060.5:ENST00000591715.5:ENST00000592206.5:ENST00000585518.5:ENST00000589554.5:ENST00000593165.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	26	2	3.97626	4.24948	4.5227	0.0300538	0.0128818	0.142135	0.0926667
chr2	214738899	214738998	1325469	0	-	0.444444	(0.44,0.476]	chr2	138587	79	INTRON	INTRON	BARD1	ENSG00000138376.11	ENST00000260947.9:ENST00000617164.5:ENST00000619009.5:ENST00000613374.5:ENST00000650978.1:ENST00000613706.5:ENST00000421162.2:ENST00000613192.2:ENST00000620057.4:ENST00000455743.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	26	2	3.97626	4.24948	4.5227	0.0300538	0.0128818	0.142135	0.0926667
chr6	37436121	37436208	2856532	0	+	0.45977	(0.44,0.476]	chr6	270089	4	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CMTR1	ENSG00000137200.13	ENST00000471097.1:ENST00000455891.5:ENST00000373451.9	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	26	2	3.97626	4.24948	4.5227	0.0300538	0.0128818	0.142135	0.0926667
chr6	161059235	161059334	3025170	0	+	0.474747	(0.44,0.476]	chr6	282325	89	INTRON	INTRON	MAP3K4	ENSG00000085511.20	ENST00000366919.6:ENST00000392142.9:ENST00000542952.5:ENST00000366920.6:ENST00000348824.11:ENST00000544041.5:ENST00000490904.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	26	2	3.97626	4.24948	4.5227	0.0300538	0.0128818	0.142135	0.0926667
chr7	7640122	7640219	3478964	0	-	0.453608	(0.44,0.476]	chr7	325627	2	SS5_PROX	SS5_PROX:INTRON	RPA3	ENSG00000106399.11	ENST00000223129.8:ENST00000406109.5:ENST00000396682.6:ENST00000462723.1:ENST00000463632.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	26	2	3.97626	4.24948	4.5227	0.0300538	0.0128818	0.142135	0.0926667
chrX	44991786	44991886	7649791	0	+	0.46	(0.44,0.476]	chrX	782744	147	INTRON	INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000675440.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000621147.5:ENST00000475233.1:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	26	2	3.97626	4.24948	4.5227	0.0300538	0.0128818	0.142135	0.0926667
chrX	109719958	109720058	7861567	0	-	0.45	(0.44,0.476]	chrX	801455	234	INTRON	INTRON	ACSL4	ENSG00000068366.21	ENST00000469796.7:ENST00000672401.1:ENST00000348502.10:ENST00000340800.7:ENST00000684030.1:ENST00000682031.1:ENST00000671846.1:ENST00000672282.1:ENST00000502391.6:ENST00000684414.1:ENST00000673016.1:ENST00000508092.5:ENST00000504383.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	26	2	3.97626	4.24948	4.5227	0.0300538	0.0128818	0.142135	0.0926667
chr7	129029656	129029756	3636328	0	-	0.47	(0.44,0.476]	chr7	338142	111	INTRON	INTRON	TNPO3	ENSG00000064419.14	ENST00000627585.2:ENST00000265388.10:ENST00000471234.5:ENST00000482320.5:ENST00000471166.1	protein_coding	protein_coding	protein_coding	protein_coding	1	53	2	3.41176	4.249175	5.08659	0.00226401	0.00130987	0.0425438	0.0333932
chr16	68106393	68106493	6370434	0	+	0.5	(0.476,0.515]	chr16	612188	168	INTRON	INTRON	ENSG00000261864:NFATC3	ENSG00000261864.1:ENSG00000072736.19	ENST00000548144.1:ENST00000563319.5:ENST00000569766.5:ENST00000553077.5:ENST00000566301.5:ENST00000549350.5:ENST00000566893.5:ENST00000575270.5:ENST00000561714.5:ENST00000346183.8:ENST00000568466.6:ENST00000539828.6:ENST00000562171.1:ENST00000349223.9:ENST00000329524.8:ENST00000379165.8:ENST00000562926.5:ENST00000570212.5:ENST00000563796.5:ENST00000567152.5:ENST00000563288.5:ENST00000535127.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA:processed_transcript	1	56	2	3.05152	4.249025	5.44653	0.0064848	2.03754e-4	0.0699952	0.0124395
chr9	111391355	111391455	4314330	0	-	0.5	(0.476,0.515]	chr9	396687	2	SS5_PROX	SS5_PROX:INTRON	ECPAS	ENSG00000136813.15	ENST00000684092.1:ENST00000338205.9:ENST00000259335.8	protein_coding	protein_coding	protein_coding	protein_coding	1	56	2	3.05152	4.249025	5.44653	0.0064848	2.03754e-4	0.0699952	0.0124395
chr12	122139931	122140030	5240497	0	+	0.525253	(0.515,0.57]	chr12	497560	6	INTRON	INTRON	MLXIP	ENSG00000175727.14	ENST00000319080.12:ENST00000538698.5:ENST00000542417.1	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	3.89856	4.24885	4.59914	0.0280943	0.00616166	0.137011	0.0676501
chr13	112878994	112879089	5548178	0	+	0.568421	(0.515,0.57]	chr13	530090	3	INTRON	INTRON	ATP11A	ENSG00000068650.19	ENST00000375645.8:ENST00000375630.6:ENST00000487903.5:ENST00000471555.5:ENST00000415301.2:ENST00000419631.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	25	2	3.89856	4.24885	4.59914	0.0280943	0.00616166	0.137011	0.0676501
chr2	106152864	106152964	1201926	0	-	0.53	(0.515,0.57]	chr2	128429	70	INTRON	INTRON	UXS1	ENSG00000115652.15	ENST00000283148.12:ENST00000409501.7:ENST00000441952.5:ENST00000416298.5:ENST00000444193.5:ENST00000457835.5:ENST00000479621.5:ENST00000479774.5:ENST00000483426.5	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	3.89856	4.24885	4.59914	0.0280943	0.00616166	0.137011	0.0676501
chr6	20597138	20597238	2829012	0	+	0.52	(0.515,0.57]	chr6	265649	376	INTRON	INTRON	CDKAL1	ENSG00000145996.11	ENST00000274695.8:ENST00000378610.1	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	3.89856	4.24885	4.59914	0.0280943	0.00616166	0.137011	0.0676501
chr9	83664929	83665029	4272643	0	-	0.29	(0.28,0.32]	chr9	392941	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	UBQLN1	ENSG00000135018.14	ENST00000376395.9:ENST00000533705.5:ENST00000257468.11:ENST00000526134.1:ENST00000527373.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	62	2	3.50836	4.24854	4.98872	0.00838468	0.00117393	0.0774402	0.0316446
chr1	70175309	70175409	479589	0	-	0.37	(0.35,0.378]	chr1	57654	1	SS5_PROX	SS5_PROX:INTRON	LRRC40	ENSG00000066557.6	ENST00000370952.4	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.1971	4.248355	4.29961	0.0367539	0.0158483	0.138959	0.109464
chr12	26933461	26933560	5298689	0	-	0.353535	(0.35,0.378]	chr12	504041	42	INTRON	INTRON	INTS13	ENSG00000064102.15	ENST00000261191.12:ENST00000544548.5:ENST00000538727.5:ENST00000537336.1	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.1971	4.248355	4.29961	0.0367539	0.0158483	0.138959	0.109464
chr12	105108361	105108459	5214644	0	+	0.357143	(0.35,0.378]	chr12	493392	1	INTRON	INTRON	WASHC4	ENSG00000136051.15	ENST00000548195.5:ENST00000311317.8:ENST00000550053.5:ENST00000332180.10:ENST00000620430.5:ENST00000547404.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	26	2	4.1971	4.248355	4.29961	0.0367539	0.0158483	0.138959	0.109464
chr15	64140481	64140581	6043329	0	+	0.37	(0.35,0.378]	chr15	575580	24	UTR3	UTR3:EXON_MRNA:INTRON	SNX1	ENSG00000028528.15	ENST00000559844.6:ENST00000380285.7:ENST00000558040.5:ENST00000560861.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	26	2	4.1971	4.248355	4.29961	0.0367539	0.0158483	0.138959	0.109464
chr17	28053704	28053803	6582630	0	+	0.353535	(0.35,0.378]	chr17	639835	49	INTRON	INTRON	NLK	ENSG00000087095.13	ENST00000407008.8:ENST00000496808.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	26	2	4.1971	4.248355	4.29961	0.0367539	0.0158483	0.138959	0.109464
chr17	82623693	82623792	6853436	0	-	0.292929	(0.28,0.32]	chr17	679349	15	INTRON	INTRON	WDR45B	ENSG00000141580.16	ENST00000392325.9:ENST00000572583.5:ENST00000573656.5:ENST00000571835.5:ENST00000573616.5:ENST00000571767.5:ENST00000571817.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	113	2	2.50162	4.248355	5.99509	0.0013622	2.74247e-4	0.0339121	0.0151711
chr19	6035099	6035199	7126058	0	-	0.36	(0.35,0.378]	chr19	717486	74	INTRON	INTRON	RFX2	ENSG00000087903.13	ENST00000303657.10:ENST00000359161.7:ENST00000592546.5:ENST00000589742.5:ENST00000586806.1:ENST00000587321.1:ENST00000586302.5:ENST00000592172.5:ENST00000586940.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	26	2	4.1971	4.248355	4.29961	0.0367539	0.0158483	0.138959	0.109464
chr19	11559716	11559816	7017632	0	+	0.37	(0.35,0.378]	chr19	697660	1	SS5_PROX	SS5_PROX:INTRON	ZNF627	ENSG00000198551.10	ENST00000593279.5:ENST00000585493.5:ENST00000588651.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	26	2	4.1971	4.248355	4.29961	0.0367539	0.0158483	0.138959	0.109464
chr2	119931427	119931526	857726	0	+	0.363636	(0.35,0.378]	chr2	96249	44	INTRON	INTRON	PTPN4	ENSG00000088179.9	ENST00000263708.7:ENST00000433888.5:ENST00000430976.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	26	2	4.1971	4.248355	4.29961	0.0367539	0.0158483	0.138959	0.109464
chr2	214783307	214783407	1325922	0	-	0.36	(0.35,0.378]	chr2	138627	14	INTRON	INTRON	BARD1	ENSG00000138376.11	ENST00000260947.9:ENST00000617164.5:ENST00000619009.5:ENST00000613374.5:ENST00000650978.1:ENST00000613706.5:ENST00000421162.2:ENST00000613192.2:ENST00000620057.4:ENST00000455743.5:ENST00000471787.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	26	2	4.1971	4.248355	4.29961	0.0367539	0.0158483	0.138959	0.109464
chr22	42569127	42569226	7526992	0	+	0.363636	(0.35,0.378]	chr22	769554	24	INTRON	INTRON	SERHL2	ENSG00000183569.18	ENST00000477564.5:ENST00000340239.8:ENST00000534080.5:ENST00000416156.6:ENST00000527167.5:ENST00000327678.10:ENST00000407614.8:ENST00000335879.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	26	2	4.1971	4.248355	4.29961	0.0367539	0.0158483	0.138959	0.109464
chr3	59795720	59795820	1707565	0	-	0.36	(0.35,0.378]	chr3	176104	430	INTRON	INTRON	FHIT	ENSG00000189283.10	ENST00000492590.6:ENST00000476844.5:ENST00000466788.1:ENST00000468189.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	26	2	4.1971	4.248355	4.29961	0.0367539	0.0158483	0.138959	0.109464
chr3	186102606	186102706	1887188	0	-	0.37	(0.35,0.378]	chr3	188716	69	INTRON	INTRON	ETV5	ENSG00000244405.8	ENST00000306376.10:ENST00000434744.5:ENST00000472868.6:ENST00000440773.5:ENST00000421809.5:ENST00000413301.5:ENST00000422039.1:ENST00000476890.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	26	2	4.1971	4.248355	4.29961	0.0367539	0.0158483	0.138959	0.109464
chr7	100149733	100149810	3363756	0	+	0.350649	(0.35,0.378]	chr7	314418	3	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	LAMTOR4	ENSG00000188186.11	ENST00000474141.5:ENST00000460732.5:ENST00000341942.10:ENST00000474831.5:ENST00000441173.1:ENST00000494136.1:ENST00000468582.5:ENST00000488241.5:ENST00000473459.5:ENST00000466498.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	26	2	4.1971	4.248355	4.29961	0.0367539	0.0158483	0.138959	0.109464
chr8	47847956	47848055	3944576	0	-	0.353535	(0.35,0.378]	chr8	361689	74	INTRON	INTRON	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.1971	4.248355	4.29961	0.0367539	0.0158483	0.138959	0.109464
chr8	124512564	124512663	4043897	0	-	0.363636	(0.35,0.378]	chr8	368890	35	INTRON	INTRON	TATDN1	ENSG00000147687.19	ENST00000522927.5:ENST00000276692.11:ENST00000630259.1:ENST00000523214.5:ENST00000519548.5:ENST00000522810.5:ENST00000517678.5:ENST00000519776.5:ENST00000521546.5:ENST00000521973.5:ENST00000605953.5:ENST00000522310.5:ENST00000520321.5:ENST00000519232.5:ENST00000520938.3:ENST00000523888.5:ENST00000523152.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	26	2	4.1971	4.248355	4.29961	0.0367539	0.0158483	0.138959	0.109464
chr9	37332219	37332318	4119789	0	+	0.373737	(0.35,0.378]	chr9	375429	40	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000461038.5:ENST00000488607.5:ENST00000463625.6:ENST00000497924.5:ENST00000481507.5:ENST00000496099.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	26	2	4.1971	4.248355	4.29961	0.0367539	0.0158483	0.138959	0.109464
chr6	12132823	12132922	2815439	0	+	0.363636	(0.35,0.378]	chr6	264826	15	INTRON	INTRON	HIVEP1	ENSG00000095951.17	ENST00000379388.7:ENST00000627968.2:ENST00000541134.5:ENST00000442081.6:ENST00000399469.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	89	2	2.6295	4.24824	5.86698	0.00142732	1.76496e-4	0.0347139	0.01216
chr16	89484742	89484842	6543544	0	-	0.3	(0.28,0.32]	chr16	634281	531	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	112	2	2.31129	4.2481	6.18491	0.00319044	1.24314e-4	0.0520345	0.0100328
chr4	67660367	67660466	2154045	0	-	0.59596	(0.57,1]	chr4	212133	108	INTRON	INTRON	UBA6	ENSG00000033178.13	ENST00000322244.10	protein_coding	protein_coding	protein_coding	protein_coding	3	85	2	4.09372	4.2481	4.40248	2.27325e-6	3.50951e-7	0.00104829	3.00241e-4
chr13	108217671	108217771	5649043	0	-	0.36	(0.35,0.378]	chr13	538185	23	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	LIG4	ENSG00000174405.15	ENST00000405925.2:ENST00000688455.1:ENST00000692222.1:ENST00000688396.1:ENST00000688595.1:ENST00000686204.1	protein_coding	protein_coding	protein_coding	protein_coding	1	60	2	2.94111	4.248055	5.555	0.0104563	1.71389e-4	0.0855102	0.0113605
chr7	139276639	139276737	3437050	0	+	0.377551	(0.35,0.378]	chr7	320252	6	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	UBN2	ENSG00000157741.15	ENST00000473989.8:ENST00000483726.1	protein_coding	protein_coding	protein_coding	protein_coding	1	60	2	2.94111	4.248055	5.555	0.0104563	1.71389e-4	0.0855102	0.0113605
chr1	229340729	229340826	652593	0	-	0.494845	(0.476,0.515]	chr1	77253	2	INTRON	INTRON	CCSAP	ENSG00000154429.11	ENST00000366687.5:ENST00000284617.7:ENST00000483092.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	53	2	3.40003	4.24713	5.09423	0.00204588	0.00139193	0.04086	0.0341261
chr6	157835896	157835996	3015889	0	+	0.5	(0.476,0.515]	chr6	281353	58	INTRON	INTRON	SNX9	ENSG00000130340.17	ENST00000614703.4:ENST00000614800.4:ENST00000680863.1:ENST00000679814.1:ENST00000680464.1:ENST00000681186.1:ENST00000679732.1:ENST00000681183.1:ENST00000681534.1:ENST00000681651.1:ENST00000680089.1:ENST00000680078.1:ENST00000680974.1:ENST00000680095.1:ENST00000680015.1:ENST00000681138.1:ENST00000392185.8:ENST00000679790.1:ENST00000680495.1:ENST00000679691.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	153	2	3.95549	4.247120000000001	4.53875	6.10545e-6	3.61027e-6	0.00185549	0.00123803
chr7	156885670	156885770	3687943	0	-	0.47	(0.44,0.476]	chr7	342096	484	INTRON	INTRON	LMBR1	ENSG00000105983.23	ENST00000353442.10:ENST00000415428.5:ENST00000454132.5:ENST00000434503.5:ENST00000430278.5:ENST00000434278.5:ENST00000444719.5:ENST00000461469.5:ENST00000414218.1:ENST00000434453.1:ENST00000498034.5:ENST00000433968.5:ENST00000485985.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	54	2	3.59417	4.247085	4.9	0.00423315	5.78231e-4	0.0572185	0.0218253
chr22	49556465	49556565	7601644	0	-	0.36	(0.35,0.378]	chr22	778566	1149	INTRON	INTRON	MIR3667HG	ENSG00000188511.13	ENST00000414287.5:ENST00000416411.1	lncRNA	lncRNA	lncRNA	lncRNA	3	89	2	2.5003	4.2467500000000005	5.9932	0.00256148	1.00366e-4	0.0466761	0.00904854
chr18	2693729	2693828	6865250	0	+	0.50505	(0.476,0.515]	chr18	679980	26	INTRON	INTRON	SMCHD1	ENSG00000101596.17	ENST00000320876.11:ENST00000688342.1:ENST00000684915.1:ENST00000581226.1:ENST00000693213.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	97	2	2.54395	4.24666	5.94937	8.361e-4	5.50774e-5	0.0263691	0.0065165
chr20	47352174	47352273	7349472	0	-	0.484848	(0.476,0.515]	chr20	749366	4	INTRON	INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000435836.5	protein_coding	protein_coding	protein_coding	protein_coding	4	97	2	2.2792	4.246545	6.21389	0.00299196	1.41639e-5	0.0503888	0.00299745
chr16	15075161	15075261	6450247	0	-	0.53	(0.515,0.57]	chr16	621489	3	SS3_PROX	SS3_PROX:INTRON	RRN3	ENSG00000085721.13	ENST00000198767.11:ENST00000563559.5:ENST00000429751.6:ENST00000327307.11:ENST00000561685.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	24	2	4.20381	4.24651	4.28921	0.0189208	0.00990051	0.108861	0.0877296
chr17	66560477	66560577	6664878	0	+	0.52	(0.515,0.57]	chr17	650338	55	INTRON	INTRON	PRKCA	ENSG00000154229.12	ENST00000413366.8:ENST00000578063.5:ENST00000284384.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	24	2	4.20381	4.24651	4.28921	0.0189208	0.00990051	0.108861	0.0877296
chr17	76444032	76444132	6843035	0	-	0.52	(0.515,0.57]	chr17	676846	381	INTRON	INTRON	UBE2O	ENSG00000175931.13	ENST00000319380.12:ENST00000586409.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	24	2	4.20381	4.24651	4.28921	0.0189208	0.00990051	0.108861	0.0877296
chr3	196363680	196363778	1898964	0	-	0.55102	(0.515,0.57]	chr3	190164	6	INTRON	INTRON	UBXN7	ENSG00000163960.12	ENST00000296328.9:ENST00000429160.1:ENST00000428095.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	24	2	4.20381	4.24651	4.28921	0.0189208	0.00990051	0.108861	0.0877296
chr7	73694950	73695047	3331690	0	+	0.536082	(0.515,0.57]	chr7	309907	6	EXON_MRNA	EXON_MRNA:INTRON	BUD23	ENSG00000071462.12	ENST00000421744.5:ENST00000265758.7:ENST00000436944.5:ENST00000463307.5:ENST00000423497.5:ENST00000430270.5:ENST00000430446.2:ENST00000442099.1:ENST00000453316.1:ENST00000471215.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	24	2	4.20381	4.24651	4.28921	0.0189208	0.00990051	0.108861	0.0877296
chr7	149585303	149585403	3672229	0	-	0.55	(0.515,0.57]	chr7	340834	213	INTRON	INTRON	ZNF767P	ENSG00000133624.14	ENST00000463567.5:ENST00000472212.5:ENST00000684939.1:ENST00000690388.1:ENST00000486492.5:ENST00000481762.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	24	2	4.20381	4.24651	4.28921	0.0189208	0.00990051	0.108861	0.0877296
chr6	41540505	41540605	3092839	0	-	0.49	(0.476,0.515]	chr6	289355	159	INTRON	INTRON	FOXP4-AS1	ENSG00000234753.6	ENST00000691406.1:ENST00000440194.1:ENST00000439386.2:ENST00000454812.1:ENST00000414386.6:ENST00000432751.1	lncRNA	lncRNA	lncRNA	lncRNA	1	56	2	2.99852	4.24643	5.49434	0.0077575	1.62782e-4	0.0757402	0.0109774
chr1	153976098	153976192	558108	0	-	0.425532	(0.408,0.44]	chr1	66164	2	SS3_PROX	SS3_PROX:INTRON	JTB	ENSG00000143543.15	ENST00000271843.9:ENST00000368589.5:ENST00000356648.5:ENST00000428469.1:ENST00000461365.1:ENST00000471173.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	26	2	3.97679	4.246415	4.51604	0.0299485	0.0137419	0.142135	0.0949306
chr11	130293395	130293495	5053651	0	-	0.43	(0.408,0.44]	chr11	476969	311	INTRON	INTRON	ZBTB44	ENSG00000196323.14	ENST00000357899.9:ENST00000527478.6:ENST00000445008.6:ENST00000525842.5:ENST00000397753.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	26	2	3.97679	4.246415	4.51604	0.0299485	0.0137419	0.142135	0.0949306
chr12	57800576	57800676	5148894	0	+	0.42	(0.408,0.44]	chr12	487211	31	INTRON	INTRON	TSFM	ENSG00000123297.20	ENST00000548851.5:ENST00000550559.5:ENST00000543727.5	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	3.97679	4.246415	4.51604	0.0299485	0.0137419	0.142135	0.0949306
chr13	95900706	95900806	5640894	0	-	0.44	(0.408,0.44]	chr13	537286	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	UGGT2	ENSG00000102595.21	ENST00000376747.8	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	3.97679	4.246415	4.51604	0.0299485	0.0137419	0.142135	0.0949306
chr13	95920695	95920795	5641097	0	-	0.41	(0.408,0.44]	chr13	537296	173	INTRON	INTRON	UGGT2	ENSG00000102595.21	ENST00000376747.8	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	3.97679	4.246415	4.51604	0.0299485	0.0137419	0.142135	0.0949306
chr15	89288713	89288813	6096197	0	+	0.44	(0.408,0.44]	chr15	580171	31	INTRON	INTRON	FANCI	ENSG00000140525.20	ENST00000674831.1:ENST00000300027.12:ENST00000310775.12:ENST00000696717.1:ENST00000676003.1:ENST00000696718.1:ENST00000447611.6:ENST00000696719.1:ENST00000565522.5:ENST00000561894.1:ENST00000566895.5:ENST00000564350.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	26	2	3.97679	4.246415	4.51604	0.0299485	0.0137419	0.142135	0.0949306
chr17	74762473	74762573	6672875	0	+	0.44	(0.408,0.44]	chr17	651126	3	SS5_PROX	SS5_PROX:INTRON	SLC9A3R1	ENSG00000109062.12	ENST00000262613.10:ENST00000583369.5:ENST00000413388.2	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	3.97679	4.246415	4.51604	0.0299485	0.0137419	0.142135	0.0949306
chr19	5659318	5659417	7005676	0	+	0.424242	(0.408,0.44]	chr19	695018	16	INTRON	INTRON	SAFB	ENSG00000160633.13	ENST00000589863.5:ENST00000588852.2:ENST00000292123.9:ENST00000592224.5:ENST00000454510.5:ENST00000589006.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	26	2	3.97679	4.246415	4.51604	0.0299485	0.0137419	0.142135	0.0949306
chr2	97804687	97804787	1184856	0	-	0.41	(0.408,0.44]	chr2	127199	2	SS5_PROX	SS5_PROX:INTRON	TMEM131	ENSG00000075568.17	ENST00000186436.10	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	3.97679	4.246415	4.51604	0.0299485	0.0137419	0.142135	0.0949306
chr2	134128685	134128785	868951	0	+	0.41	(0.408,0.44]	chr2	97549	80	INTRON	INTRON	MGAT5	ENSG00000152127.9	ENST00000468758.1:ENST00000481801.5:ENST00000409645.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	26	2	3.97679	4.246415	4.51604	0.0299485	0.0137419	0.142135	0.0949306
chr2	135564438	135564538	874283	0	+	0.44	(0.408,0.44]	chr2	97879	325	INTRON	INTRON	R3HDM1	ENSG00000048991.17	ENST00000483021.5:ENST00000463230.5:ENST00000683871.1:ENST00000409478.5:ENST00000264160.8:ENST00000438014.5:ENST00000488035.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	26	2	3.97679	4.246415	4.51604	0.0299485	0.0137419	0.142135	0.0949306
chr3	191332719	191332819	1589507	0	+	0.41	(0.408,0.44]	chr3	164575	26	INTRON	INTRON	CCDC50	ENSG00000152492.15	ENST00000392456.4:ENST00000392455.9	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	3.97679	4.246415	4.51604	0.0299485	0.0137419	0.142135	0.0949306
chr4	32048989	32049089	1941938	0	+	0.41	(0.408,0.44]	chr4	194727	508	INTRON	INTRON	LINC02506	ENSG00000251129.3	ENST00000662669.1:ENST00000665582.2:ENST00000667252.2:ENST00000660373.2:ENST00000684849.1:ENST00000513211.2:ENST00000659613.1:ENST00000657576.1:ENST00000686730.1:ENST00000685407.1:ENST00000685455.1:ENST00000655951.1	lncRNA	lncRNA	lncRNA	lncRNA	0	26	2	3.97679	4.246415	4.51604	0.0299485	0.0137419	0.142135	0.0949306
chr4	87131412	87131505	1995786	0	+	0.430108	(0.408,0.44]	chr4	199131	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	AFF1	ENSG00000172493.23	ENST00000395146.9:ENST00000674009.1:ENST00000544085.6:ENST00000307808.10	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	3.97679	4.246415	4.51604	0.0299485	0.0137419	0.142135	0.0949306
chr4	158775604	158775704	2072146	0	+	0.41	(0.408,0.44]	chr4	205062	59	INTRON	INTRON	FNIP2	ENSG00000052795.13	ENST00000264433.11:ENST00000504704.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	26	2	3.97679	4.246415	4.51604	0.0299485	0.0137419	0.142135	0.0949306
chr6	34341061	34341161	3084257	0	-	0.44	(0.408,0.44]	chr6	288627	450	INTRON	INTRON	NUDT3:RPS10-NUDT3	ENSG00000272325.2:ENSG00000270800.3	ENST00000607016.2:ENST00000639725.1:ENST00000639877.1:ENST00000605528.2	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	3.97679	4.246415	4.51604	0.0299485	0.0137419	0.142135	0.0949306
chr6	150939640	150939738	2998612	0	+	0.438776	(0.408,0.44]	chr6	280551	5	INTRON	INTRON	MTHFD1L	ENSG00000120254.16	ENST00000611279.4:ENST00000367321.8:ENST00000618312.4	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	3.97679	4.246415	4.51604	0.0299485	0.0137419	0.142135	0.0949306
chrX	18936748	18936846	7771547	0	-	0.438776	(0.408,0.44]	chrX	794348	2	INTRON	INTRON	PHKA2	ENSG00000044446.12	ENST00000379942.5	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	3.97679	4.246415	4.51604	0.0299485	0.0137419	0.142135	0.0949306
chr1	39568228	39568323	427702	0	-	0.378947	(0.378,0.408]	chr1	51919	5	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PABPC4	ENSG00000090621.15	ENST00000677006.1:ENST00000527718.2:ENST00000372858.8:ENST00000372856.7:ENST00000372857.7:ENST00000372862.7:ENST00000676523.1:ENST00000677548.1:ENST00000678980.1:ENST00000677244.1:ENST00000677609.1:ENST00000679246.1:ENST00000678287.1:ENST00000678625.1:ENST00000470443.6:ENST00000676863.1:ENST00000678894.1:ENST00000421687.6:ENST00000525669.5:ENST00000513632.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	648	2	4.22986	4.246005	4.26215	4.00945e-9	6.93776e-10	1.45432e-5	5.49494e-6
chr3	168021643	168021742	1854187	0	-	0.363636	(0.35,0.378]	chr3	186347	105	INTRON	INTRON	GOLIM4	ENSG00000173905.9	ENST00000470487.6:ENST00000309027.4	protein_coding	protein_coding	protein_coding	protein_coding	2	81	2	2.73164	4.24597	5.7603	0.00387645	6.3427e-5	0.0543578	0.00658818
chr12	74238048	74238148	5367827	0	-	0.34	(0.32,0.35]	chr12	512116	338	INTRON	INTRON	LINC02882	ENSG00000251138.7	ENST00000663261.1:ENST00000665907.1:ENST00000669556.1:ENST00000653134.1:ENST00000549905.5:ENST00000662107.1:ENST00000658833.1:ENST00000515416.7:ENST00000551726.2:ENST00000670573.1:ENST00000656876.1:ENST00000668228.1:ENST00000668997.1:ENST00000665895.1:ENST00000670471.1:ENST00000658677.1:ENST00000668665.1	lncRNA	lncRNA	lncRNA	lncRNA	1	58	2	3.41554	4.245915	5.07629	0.00468114	0.00153152	0.0600108	0.0361484
chr7	105378749	105378849	3603804	0	-	0.27	[0,0.28]	chr7	336161	718	INTRON	INTRON	SRPK2	ENSG00000135250.17	ENST00000393651.8:ENST00000482897.5:ENST00000460391.5:ENST00000462282.5:ENST00000465112.5:ENST00000482862.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	88	2	2.75887	4.245815	5.73276	0.00360252	0.00156565	0.0552588	0.0360583
chr2	197417510	197417610	1306842	0	-	0.38	(0.378,0.408]	chr2	136722	2	INTRON	INTRON	SF3B1	ENSG00000115524.17	ENST00000652026.1:ENST00000652738.1:ENST00000335508.11:ENST00000470268.2:ENST00000482158.1:ENST00000409915.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	54	2	3.4275	4.2458100000000005	5.06412	0.0030522	0.00126053	0.0493883	0.03295
chr7	66530873	66530973	3539491	0	-	0.54	(0.515,0.57]	chr7	330225	49	EXON_LNCRNA	EXON_LNCRNA	RABGEF1P1	ENSG00000229180.8	ENST00000449307.3:ENST00000639011.1:ENST00000692299.1:ENST00000686269.1:ENST00000649635.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	2	105	2	3.925	4.245625	4.56625	8.71525e-5	2.84976e-6	0.00783545	0.0011973
chr12	132576108	132576203	5251673	0	+	0.347368	(0.32,0.35]	chr12	499512	12	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1:ENST00000542306.5:ENST00000537804.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	58	2	3.0247	4.24556	5.46642	0.00671684	0.00127669	0.0738715	0.0326395
chr5	79658500	79658599	2399203	0	+	0.313131	(0.28,0.32]	chr5	231745	11	INTRON	INTRON	TENT2	ENSG00000164329.14	ENST00000423041.6:ENST00000504233.5:ENST00000453514.6:ENST00000428308.6:ENST00000296783.7:ENST00000504982.1:ENST00000513735.5:ENST00000515298.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	66	2	3.04485	4.24534	5.44583	0.00894006	5.8721e-4	0.0799922	0.0220073
chr1	1477937	1478025	1627	0	+	0.534091	(0.515,0.57]	chr1	370	2	INTRON	INTRON	ATAD3B	ENSG00000160072.20	ENST00000673477.1:ENST00000308647.8	protein_coding	protein_coding	protein_coding	protein_coding	35	1368	2	4.05608	4.245215	4.43435	3.80085e-12	1.51801e-12	1.55537e-7	5.28093e-8
chr1	55073159	55073243	464393	0	-	0.238095	[0,0.28]	chr1	55934	3	SS3_PROX	SS3_PROX:INTRON	USP24	ENSG00000162402.14	ENST00000294383.7:ENST00000484447.5	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.20106	4.245105000000001	4.28915	0.0695895	0.0319595	0.184298	0.14477
chr11	130294494	130294594	5053662	0	-	0.25	[0,0.28]	chr11	476969	322	INTRON	INTRON	ZBTB44	ENSG00000196323.14	ENST00000357899.9:ENST00000527478.6:ENST00000445008.6:ENST00000525842.5:ENST00000397753.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	28	2	4.20106	4.245105000000001	4.28915	0.0695895	0.0319595	0.184298	0.14477
chr12	53032519	53032617	5141690	0	+	0.255102	[0,0.28]	chr12	485029	40	INTRON	INTRON	EIF4B	ENSG00000063046.18	ENST00000262056.14:ENST00000420463.7:ENST00000416762.7:ENST00000550704.5:ENST00000549481.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	28	2	4.20106	4.245105000000001	4.28915	0.0695895	0.0319595	0.184298	0.14477
chr2	10148730	10148830	690990	0	+	0.28	[0,0.28]	chr2	81105	27	INTRON	INTRON	RRM2	ENSG00000171848.16	ENST00000641498.1:ENST00000646978.1:ENST00000381786.7	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	0	28	2	4.20106	4.245105000000001	4.28915	0.0695895	0.0319595	0.184298	0.14477
chr2	38359703	38359802	1099172	0	-	0.262626	[0,0.28]	chr2	117880	2	INTRON	INTRON	ATL2	ENSG00000119787.14	ENST00000378954.9:ENST00000406122.5:ENST00000405384.6:ENST00000402054.5:ENST00000419554.6:ENST00000651368.1:ENST00000452935.6:ENST00000449130.5:ENST00000443098.5:ENST00000456736.5:ENST00000472097.1:ENST00000451483.1:ENST00000416222.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	28	2	4.20106	4.245105000000001	4.28915	0.0695895	0.0319595	0.184298	0.14477
chr2	47802627	47802724	777238	0	+	0.257732	[0,0.28]	chr2	87435	11	INTRON	INTRON	MSH6	ENSG00000116062.18	ENST00000652107.1:ENST00000445503.5:ENST00000614496.4:ENST00000234420.11:ENST00000673637.1:ENST00000540021.6:ENST00000538136.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	28	2	4.20106	4.245105000000001	4.28915	0.0695895	0.0319595	0.184298	0.14477
chr2	85043965	85044065	820997	0	+	0.25	[0,0.28]	chr2	91443	3	SS5_PROX	SS5_PROX:INTRON	KCMF1	ENSG00000176407.18	ENST00000409785.9:ENST00000453448.1	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.20106	4.245105000000001	4.28915	0.0695895	0.0319595	0.184298	0.14477
chr2	169533568	169533667	1261282	0	-	0.262626	[0,0.28]	chr2	133613	17	INTRON	INTRON	FASTKD1	ENSG00000138399.18	ENST00000453153.7:ENST00000453929.6:ENST00000490590.5:ENST00000495505.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	28	2	4.20106	4.245105000000001	4.28915	0.0695895	0.0319595	0.184298	0.14477
chr2	242133134	242133233	1057186	0	+	0.252525	[0,0.28]	chr2	112759	8	INTRON	INTRON	LINC01881	ENSG00000220804.10	ENST00000456398.5:ENST00000692555.1:ENST00000622435.4:ENST00000614114.4:ENST00000682782.1:ENST00000433444.1:ENST00000683938.1:ENST00000682139.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	28	2	4.20106	4.245105000000001	4.28915	0.0695895	0.0319595	0.184298	0.14477
chr3	9425496	9425588	1359169	0	+	0.228261	[0,0.28]	chr3	142677	6	INTRON	INTRON	SETD5	ENSG00000168137.20	ENST00000402198.7:ENST00000431285.5:ENST00000683012.1:ENST00000463180.5:ENST00000478475.5:ENST00000415650.5:ENST00000682536.1:ENST00000663774.1:ENST00000665872.1:ENST00000666307.1:ENST00000693430.1:ENST00000691925.1:ENST00000684606.1:ENST00000691175.1:ENST00000688835.1:ENST00000683262.1:ENST00000443339.5:ENST00000406341.5:ENST00000670063.1:ENST00000468208.2:ENST00000691299.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	28	2	4.20106	4.245105000000001	4.28915	0.0695895	0.0319595	0.184298	0.14477
chr3	13382580	13382678	1618219	0	-	0.27551	[0,0.28]	chr3	167208	25	INTRON	INTRON	NUP210	ENSG00000132182.13	ENST00000254508.7:ENST00000420141.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	28	2	4.20106	4.245105000000001	4.28915	0.0695895	0.0319595	0.184298	0.14477
chr3	37078979	37079078	1655640	0	-	0.252525	[0,0.28]	chr3	169908	35	INTRON	INTRON	LRRFIP2	ENSG00000093167.18	ENST00000336686.9:ENST00000354379.8:ENST00000421276.6:ENST00000396428.6:ENST00000440230.5:ENST00000440742.2:ENST00000416425.5	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.20106	4.245105000000001	4.28915	0.0695895	0.0319595	0.184298	0.14477
chr3	88064995	88065095	1457084	0	+	0.19	[0,0.28]	chr3	153164	51	INTRON	INTRON	ZNF654	ENSG00000175105.8	ENST00000636215.2:ENST00000473136.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	28	2	4.20106	4.245105000000001	4.28915	0.0695895	0.0319595	0.184298	0.14477
chr4	82962740	82962840	2180765	0	-	0.23	[0,0.28]	chr4	214500	159	INTRON	INTRON	LIN54	ENSG00000189308.11	ENST00000340417.8:ENST00000510877.5:ENST00000446851.6:ENST00000442461.6:ENST00000510557.5:ENST00000508171.5:ENST00000506560.5:ENST00000505397.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	28	2	4.20106	4.245105000000001	4.28915	0.0695895	0.0319595	0.184298	0.14477
chr4	168991722	168991822	2294486	0	-	0.24	[0,0.28]	chr4	222054	10	INTRON	INTRON	CBR4	ENSG00000145439.12	ENST00000510042.5:ENST00000509108.1:ENST00000306193.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	28	2	4.20106	4.245105000000001	4.28915	0.0695895	0.0319595	0.184298	0.14477
chr5	62473720	62473817	2363621	0	+	0.164948	[0,0.28]	chr5	227890	31	INTRON	INTRON	IPO11	ENSG00000086200.17	ENST00000424533.5:ENST00000325324.11:ENST00000409296.7:ENST00000507640.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	28	2	4.20106	4.245105000000001	4.28915	0.0695895	0.0319595	0.184298	0.14477
chr5	105390460	105390560	2696331	0	-	0.18	[0,0.28]	chr5	254248	1442	INTRON	INTRON	ENSG00000251574	ENSG00000251574.8	ENST00000503650.1	lncRNA	lncRNA	lncRNA	lncRNA	0	28	2	4.20106	4.245105000000001	4.28915	0.0695895	0.0319595	0.184298	0.14477
chr5	126942897	126942997	2713681	0	-	0.26	[0,0.28]	chr5	255272	243	INTRON	INTRON	MARCHF3	ENSG00000173926.6	ENST00000308660.6:ENST00000502289.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	28	2	4.20106	4.245105000000001	4.28915	0.0695895	0.0319595	0.184298	0.14477
chr6	17622667	17622766	3065350	0	-	0.222222	[0,0.28]	chr6	284764	56	INTRON	INTRON	NUP153	ENSG00000124789.12	ENST00000613258.4:ENST00000537253.5:ENST00000262077.3	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.20106	4.245105000000001	4.28915	0.0695895	0.0319595	0.184298	0.14477
chr6	68684320	68684420	2886809	0	+	0.25	[0,0.28]	chr6	273730	445	INTRON	INTRON	ADGRB3	ENSG00000135298.15	ENST00000370598.6:ENST00000684661.1:ENST00000546190.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	28	2	4.20106	4.245105000000001	4.28915	0.0695895	0.0319595	0.184298	0.14477
chr6	167932403	167932502	3035421	0	+	0.272727	[0,0.28]	chr6	282838	70	INTRON	INTRON	AFDN	ENSG00000130396.21	ENST00000683244.1:ENST00000351017.9:ENST00000344191.8:ENST00000392112.5:ENST00000392108.7:ENST00000400822.7:ENST00000447894.6:ENST00000366809.6:ENST00000366806.6:ENST00000511637.5:ENST00000485634.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	28	2	4.20106	4.245105000000001	4.28915	0.0695895	0.0319595	0.184298	0.14477
chr7	65397442	65397542	3322690	0	+	0.22	[0,0.28]	chr7	308935	82	INTRON	INTRON	ZNF92	ENSG00000146757.14	ENST00000357512.3:ENST00000431504.1:ENST00000328747.12:ENST00000450302.2	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.20106	4.245105000000001	4.28915	0.0695895	0.0319595	0.184298	0.14477
chr7	111307488	111307588	3621557	0	-	0.27	[0,0.28]	chr7	337093	3436	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	28	2	4.20106	4.245105000000001	4.28915	0.0695895	0.0319595	0.184298	0.14477
chr9	122277451	122277551	4194235	0	+	0.24	[0,0.28]	chr9	382675	60	INTRON	INTRON	MRRF	ENSG00000148187.18	ENST00000297908.7:ENST00000344641.8:ENST00000441707.5:ENST00000373723.9:ENST00000373729.5:ENST00000373728.6:ENST00000373727.5:ENST00000470366.5:ENST00000373724.1:ENST00000467864.5:ENST00000489572.5:ENST00000394315.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	28	2	4.20106	4.245105000000001	4.28915	0.0695895	0.0319595	0.184298	0.14477
chr1	91515195	91515293	161259	0	+	0.377551	(0.35,0.378]	chr1	17415	2	SS5_PROX	SS5_PROX:INTRON	CDC7	ENSG00000097046.13	ENST00000234626.11:ENST00000428239.5:ENST00000486509.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	26	2	4.08816	4.24472	4.40128	0.046021	0.0120289	0.149888	0.0962115
chr1	155787269	155787369	563737	0	-	0.36	(0.35,0.378]	chr1	67318	15	INTRON	INTRON	GON4L	ENSG00000116580.20	ENST00000368331.6:ENST00000615926.4:ENST00000437809.5:ENST00000271883.9:ENST00000361040.9:ENST00000622608.2:ENST00000471341.5:ENST00000482386.5:ENST00000467009.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	26	2	4.08816	4.24472	4.40128	0.046021	0.0120289	0.149888	0.0962115
chr1	235249275	235249373	663069	0	-	0.367347	(0.35,0.378]	chr1	78528	24	INTRON	INTRON	ARID4B	ENSG00000054267.22	ENST00000349213.7:ENST00000366603.6:ENST00000264183.9:ENST00000421364.5:ENST00000491632.5:ENST00000418304.1:ENST00000466653.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	26	2	4.08816	4.24472	4.40128	0.046021	0.0120289	0.149888	0.0962115
chr1	247043532	247043632	682960	0	-	0.37	(0.35,0.378]	chr1	80116	36	INTRON	INTRON	ZNF670-ZNF695:ZNF670	ENSG00000135747.11:ENSG00000277462.2	ENST00000465049.6:ENST00000474541.1:ENST00000366503.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	26	2	4.08816	4.24472	4.40128	0.046021	0.0120289	0.149888	0.0962115
chr11	66081784	66081883	4807983	0	+	0.353535	(0.35,0.378]	chr11	447330	106	INTRON	INTRON	PACS1	ENSG00000175115.13	ENST00000320580.9:ENST00000527224.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	26	2	4.08816	4.24472	4.40128	0.046021	0.0120289	0.149888	0.0962115
chr13	95689132	95689232	5517315	0	+	0.36	(0.35,0.378]	chr13	527643	114	INTRON	INTRON	DNAJC3	ENSG00000102580.15	ENST00000602402.6:ENST00000376795.6	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.08816	4.24472	4.40128	0.046021	0.0120289	0.149888	0.0962115
chr13	95975058	95975157	5641650	0	-	0.373737	(0.35,0.378]	chr13	537352	20	INTRON	INTRON	UGGT2	ENSG00000102595.21	ENST00000376747.8	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.08816	4.24472	4.40128	0.046021	0.0120289	0.149888	0.0962115
chr15	89884530	89884627	6257751	0	-	0.350515	(0.35,0.378]	chr15	597099	1	INTRON	INTRON	AP3S2:ARPIN-AP3S2	ENSG00000157823.17:ENSG00000250021.7	ENST00000336418.9:ENST00000398333.7:ENST00000423566.6:ENST00000558011.5:ENST00000560940.5:ENST00000557999.5:ENST00000558806.5:ENST00000559162.5:ENST00000558999.5:ENST00000559629.1:ENST00000558648.5:ENST00000560184.5:ENST00000560224.1:ENST00000560251.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	26	2	4.08816	4.24472	4.40128	0.046021	0.0120289	0.149888	0.0962115
chr17	62511733	62511832	6653211	0	+	0.373737	(0.35,0.378]	chr17	649320	28	INTRON	INTRON	TLK2	ENSG00000146872.19	ENST00000582809.5:ENST00000684213.1:ENST00000583843.5:ENST00000579450.5:ENST00000582195.6:ENST00000682085.1:ENST00000580705.5:ENST00000346027.10:ENST00000326270.13:ENST00000682203.1:ENST00000343388.11:ENST00000683536.1:ENST00000684440.1:ENST00000684772.1:ENST00000682274.1:ENST00000682827.1:ENST00000583690.6:ENST00000682075.1:ENST00000683104.1:ENST00000684012.1:ENST00000581041.5:ENST00000684553.1:ENST00000683737.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	26	2	4.08816	4.24472	4.40128	0.046021	0.0120289	0.149888	0.0962115
chr4	48841935	48842035	1958325	0	+	0.36	(0.35,0.378]	chr4	196225	43	INTRON	INTRON	OCIAD1	ENSG00000109180.15	ENST00000504654.5:ENST00000509122.5:ENST00000505922.6:ENST00000509664.5:ENST00000514981.5:ENST00000512981.5:ENST00000507210.5:ENST00000508996.5:ENST00000396448.6:ENST00000512236.5:ENST00000509164.5:ENST00000381473.7:ENST00000511102.5:ENST00000264312.12:ENST00000444354.6:ENST00000509963.5:ENST00000509246.5:ENST00000506801.5:ENST00000503016.5:ENST00000510824.5:ENST00000507546.5:ENST00000513641.5:ENST00000425583.6:ENST00000508293.5:ENST00000513391.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	26	2	4.08816	4.24472	4.40128	0.046021	0.0120289	0.149888	0.0962115
chr4	127962069	127962169	2238538	0	-	0.37	(0.35,0.378]	chr4	219110	41	INTRON	INTRON	MFSD8	ENSG00000164073.11	ENST00000296468.8:ENST00000641686.2:ENST00000641186.1:ENST00000641774.1:ENST00000641748.1:ENST00000641508.1:ENST00000641690.1:ENST00000641928.1:ENST00000641464.1:ENST00000641092.1:ENST00000641397.1:ENST00000641393.1:ENST00000641025.1:ENST00000641509.1:ENST00000642034.1:ENST00000641178.1:ENST00000641147.1:ENST00000641753.1:ENST00000641434.1:ENST00000641482.1:ENST00000641133.1:ENST00000515130.6:ENST00000641332.1:ENST00000641870.1:ENST00000641949.1:ENST00000641228.1:ENST00000641590.1:ENST00000641843.1:ENST00000642078.1:ENST00000641882.1:ENST00000641742.1:ENST00000641658.1:ENST00000513559.6:ENST00000509826.2:ENST00000642042.1:ENST00000641340.1:ENST00000641369.1:ENST00000641243.1:ENST00000505284.6:ENST00000641134.1:ENST00000641695.1:ENST00000641503.1:ENST00000641743.1:ENST00000641776.1:ENST00000641264.1:ENST00000508441.2:ENST00000641558.1:ENST00000641140.1:ENST00000641447.1:ENST00000641356.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	26	2	4.08816	4.24472	4.40128	0.046021	0.0120289	0.149888	0.0962115
chr5	134843387	134843487	2491255	0	+	0.36	(0.35,0.378]	chr5	238014	94	INTRON	INTRON	DDX46	ENSG00000145833.16	ENST00000507053.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	0	26	2	4.08816	4.24472	4.40128	0.046021	0.0120289	0.149888	0.0962115
chr7	74886990	74887086	3556725	0	-	0.375	(0.35,0.378]	chr7	331173	15	INTRON	INTRON	STAG3L2	ENSG00000277072.5	ENST00000651031.1:ENST00000650988.1:ENST00000652688.1:ENST00000426587.5:ENST00000622110.5:ENST00000618922.4:ENST00000611766.4:ENST00000622215.1	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript:transcribed_unprocessed_pseudogene	0	26	2	4.08816	4.24472	4.40128	0.046021	0.0120289	0.149888	0.0962115
chr7	102021597	102021697	3368410	0	+	0.36	(0.35,0.378]	chr7	315233	616	INTRON	INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000497815.5:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000558469.5:ENST00000560541.5:ENST00000558836.5:ENST00000606749.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	26	2	4.08816	4.24472	4.40128	0.046021	0.0120289	0.149888	0.0962115
chr9	291214	291310	4088839	0	+	0.364583	(0.35,0.378]	chr9	372441	18	EXON_MRNA	EXON_MRNA:INTRON	DOCK8	ENSG00000107099.18	ENST00000432829.7:ENST00000524396.5:ENST00000682121.1:ENST00000454469.6:ENST00000684384.1:ENST00000684166.1:ENST00000382329.2:ENST00000682249.1:ENST00000453981.5:ENST00000382341.5:ENST00000487230.5:ENST00000483757.6:ENST00000478380.5:ENST00000469391.5:ENST00000495184.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	26	2	4.08816	4.24472	4.40128	0.046021	0.0120289	0.149888	0.0962115
chr9	105698029	105698127	4182573	0	+	0.377551	(0.35,0.378]	chr9	381483	29	INTRON	INTRON	TMEM38B	ENSG00000095209.12	ENST00000374692.8:ENST00000434214.1	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.08816	4.24472	4.40128	0.046021	0.0120289	0.149888	0.0962115
chr3	158132152	158132207	1538497	0	+	0.472727	(0.44,0.476]	chr3	160266	1	UTR3	UTR3:EXON_MRNA:INTRON	RSRC1	ENSG00000174891.14	ENST00000480820.5:ENST00000494002.5:ENST00000295930.7:ENST00000471994.5:ENST00000683733.1:ENST00000682221.1:ENST00000683831.1:ENST00000683516.1:ENST00000482822.3:ENST00000476899.6:ENST00000464171.5:ENST00000611884.5:ENST00000682164.1:ENST00000684604.1:ENST00000683899.1:ENST00000682500.1:ENST00000684683.1:ENST00000684512.1:ENST00000683394.1:ENST00000684156.1:ENST00000312179.10:ENST00000475278.6:ENST00000480119.5:ENST00000468344.5:ENST00000471911.5:ENST00000683137.1:ENST00000477788.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	91	2	2.44812	4.244625	6.04113	0.00368597	8.64562e-6	0.0535094	0.00211124
chr19	18497726	18497826	7152771	0	-	0.44	(0.408,0.44]	chr19	722886	219	INTRON	INTRON	ELL	ENSG00000105656.13	ENST00000262809.9:ENST00000594635.6:ENST00000596915.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	54	2	3.59564	4.244455	4.89327	0.00458906	5.73354e-4	0.0595107	0.0217398
chr11	96294388	96294488	5023880	0	-	0.36	(0.35,0.378]	chr11	473809	2005	INTRON	INTRON	MAML2	ENSG00000184384.14	ENST00000524717.6	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.19022	4.244305000000001	4.29839	0.0294717	0.0209891	0.128055	0.122348
chr12	109851322	109851417	5407389	0	-	0.357895	(0.35,0.378]	chr12	516185	5	UTR3	UTR3:EXON_MRNA	GLTP	ENSG00000139433.11	ENST00000318348.9	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.19022	4.244305000000001	4.29839	0.0294717	0.0209891	0.128055	0.122348
chr15	64573739	64573839	6045221	0	+	0.36	(0.35,0.378]	chr15	575696	708	INTRON	INTRON	ZNF609	ENSG00000180357.10	ENST00000326648.5:ENST00000558680.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	26	2	4.19022	4.244305000000001	4.29839	0.0294717	0.0209891	0.128055	0.122348
chr3	133649633	133649706	1821645	0	-	0.369863	(0.35,0.378]	chr3	183335	1	EXON_MRNA	EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TOPBP1	ENSG00000163781.14	ENST00000260810.10:ENST00000642236.1:ENST00000511439.5:ENST00000509162.1:ENST00000572787.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	26	2	4.19022	4.244305000000001	4.29839	0.0294717	0.0209891	0.128055	0.122348
chr3	142511759	142511859	1838291	0	-	0.37	(0.35,0.378]	chr3	184828	1	SS5_PROX	SS5_PROX:INTRON	ATR	ENSG00000175054.16	ENST00000350721.9:ENST00000656590.1:ENST00000666943.1:ENST00000661310.1:ENST00000653868.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	26	2	4.19022	4.244305000000001	4.29839	0.0294717	0.0209891	0.128055	0.122348
chr4	467184	467284	2092851	0	-	0.37	(0.35,0.378]	chr4	206783	224	INTRON	INTRON	ABCA11P:ZNF721	ENSG00000251595.7:ENSG00000182903.16	ENST00000451020.6:ENST00000514396.5:ENST00000507854.1:ENST00000515578.5:ENST00000506646.5:ENST00000507078.1:ENST00000511833.3:ENST00000338977.5:ENST00000505900.1	protein_coding	protein_coding	protein_coding:transcribed_processed_pseudogene	protein_coding:nonsense_mediated_decay:processed_transcript	0	26	2	4.19022	4.244305000000001	4.29839	0.0294717	0.0209891	0.128055	0.122348
chr6	125071369	125071469	2952576	0	+	0.36	(0.35,0.378]	chr6	277727	129	INTRON	INTRON	RNF217	ENSG00000146373.17	ENST00000521654.7:ENST00000560949.5:ENST00000519565.5:ENST00000368414.6:ENST00000359704.2:ENST00000432158.6:ENST00000368415.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	26	2	4.19022	4.244305000000001	4.29839	0.0294717	0.0209891	0.128055	0.122348
chr7	38814622	38814722	3522003	0	-	0.36	(0.35,0.378]	chr7	328482	174	INTRON	INTRON	VPS41	ENSG00000006715.16	ENST00000310301.9:ENST00000395969.6:ENST00000413141.5:ENST00000265745.13:ENST00000414632.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	26	2	4.19022	4.244305000000001	4.29839	0.0294717	0.0209891	0.128055	0.122348
chr8	27380250	27380350	3720332	0	+	0.37	(0.35,0.378]	chr8	345640	530	INTRON	INTRON	PTK2B	ENSG00000120899.18	ENST00000397501.5:ENST00000522338.5:ENST00000521164.5:ENST00000346049.10:ENST00000420218.3:ENST00000522517.5	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.19022	4.244305000000001	4.29839	0.0294717	0.0209891	0.128055	0.122348
chrX	123610417	123610511	7877782	0	-	0.37234	(0.35,0.378]	chrX	802395	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	THOC2	ENSG00000125676.20	ENST00000448128.5:ENST00000245838.13:ENST00000441692.5:ENST00000492203.1:ENST00000497887.5:ENST00000618150.4:ENST00000432353.5:ENST00000455053.5:ENST00000355725.8:ENST00000416618.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	26	2	4.19022	4.244305000000001	4.29839	0.0294717	0.0209891	0.128055	0.122348
chr19	18919022	18919122	7153368	0	-	0.52	(0.515,0.57]	chr19	722999	4	SS5_PROX	SS5_PROX:INTRON	COPE	ENSG00000105669.14	ENST00000262812.9:ENST00000349893.8:ENST00000600932.5:ENST00000351079.8:ENST00000593827.1:ENST00000597646.5:ENST00000599964.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	49	2	3.05839	4.2442899999999995	5.43019	0.00485936	2.60422e-4	0.0640618	0.0148796
chr2	170992793	170992891	1262390	0	-	0.244898	[0,0.28]	chr2	133785	21	UTR3	UTR3:EXON_MRNA	TLK1	ENSG00000198586.14	ENST00000431350.7:ENST00000360843.7:ENST00000359766.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	65	2	3.13926	4.24408	5.3489	0.00563224	0.00514751	0.0678837	0.062965
chr7	131359647	131359747	3416760	0	+	0.27	[0,0.28]	chr7	319187	313	INTRON	INTRON	MKLN1	ENSG00000128585.18	ENST00000421797.6:ENST00000416992.6:ENST00000429546.5:ENST00000446815.5:ENST00000494286.5:ENST00000352689.11:ENST00000494785.5:ENST00000458153.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	65	2	3.13926	4.24408	5.3489	0.00563224	0.00514751	0.0678837	0.062965
chr2	208687081	208687181	996268	0	+	0.28	[0,0.28]	chr2	106920	297	INTRON	INTRON	PTH2R	ENSG00000144407.10	ENST00000419079.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	1	65	2	3.09587	4.244045	5.39222	0.00651565	0.00453865	0.0735232	0.0595107
chr12	103947946	103948041	5208525	0	+	0.336842	(0.32,0.35]	chr12	492975	4	UTR3	UTR3:EXON_MRNA:INTRON	HSP90B1	ENSG00000166598.16	ENST00000550595.2:ENST00000680899.1:ENST00000680391.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	77	2	2.7493	4.243765	5.73823	0.00296357	4.5635e-4	0.0500135	0.0196892
chr6	125263251	125263347	2954258	0	+	0.385417	(0.378,0.408]	chr6	277815	4	UTR3	UTR3:EXON_MRNA	TPD52L1	ENSG00000111907.21	ENST00000304877.17:ENST00000368402.9:ENST00000368388.6:ENST00000534000.6:ENST00000392482.6:ENST00000571678.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	86	2	2.66822	4.2434650000000005	5.81871	0.00112898	1.62088e-4	0.0308465	0.0116382
chr10	80156012	80156100	4657744	0	-	0.579545	(0.57,1]	chr10	429052	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ANXA11	ENSG00000122359.18	ENST00000372231.7:ENST00000438331.5:ENST00000422982.8:ENST00000265447.8:ENST00000463340.1:ENST00000447489.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	47	2	2.81057	4.24345	5.67633	0.00169295	4.81335e-6	0.0381936	0.00161664
chr19	16635170	16635269	7150530	0	-	0.454545	(0.44,0.476]	chr19	722431	15	EXON_LNCRNA	EXON_LNCRNA:INTRON	SMIM7:ENSG00000269044	ENSG00000214046.9:ENSG00000269044.2	ENST00000465250.6:ENST00000481671.6:ENST00000594662.5:ENST00000597781.5:ENST00000598278.5:ENST00000598112.2	protein_coding	nonsense_mediated_decay	protein_coding:lncRNA	nonsense_mediated_decay:lncRNA	1	53	2	3.45957	4.2433	5.02703	0.00278015	0.00106385	0.0469265	0.0300133
chr3	128642662	128642760	1813928	0	-	0.459184	(0.44,0.476]	chr3	182322	2	INTRON	INTRON	RPN1	ENSG00000163902.12	ENST00000296255.8:ENST00000497289.5:ENST00000495462.5:ENST00000476931.1:ENST00000497415.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	53	2	3.45957	4.2433	5.02703	0.00278015	0.00106385	0.0469265	0.0300133
chr2	201258682	201258782	982904	0	+	0.4	(0.378,0.408]	chr2	105546	3	SS5_PROX	SS5_PROX:INTRON	CASP8	ENSG00000064012.24	ENST00000392263.6:ENST00000432109.6:ENST00000696067.1:ENST00000264275.9:ENST00000471383.5:ENST00000450491.6:ENST00000440732.6:ENST00000392258.7:ENST00000447616.6:ENST00000413726.6:ENST00000358485.8:ENST00000696087.1:ENST00000696068.1:ENST00000696085.1:ENST00000437283.5:ENST00000490412.5:ENST00000339403.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	27	2	3.82294	4.24316	4.66338	0.044228	0.0103469	0.162255	0.0850389
chr20	58410817	58410917	7289761	0	+	0.38	(0.378,0.408]	chr20	741668	201	INTRON	INTRON	VAPB	ENSG00000124164.16	ENST00000475243.6:ENST00000395802.7:ENST00000520497.1:ENST00000265619.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	27	2	3.82294	4.24316	4.66338	0.044228	0.0103469	0.162255	0.0850389
chr8	55807513	55807612	3754141	0	+	0.393939	(0.378,0.408]	chr8	349228	21	INTRON	INTRON	TGS1	ENSG00000137574.11	ENST00000260129.6:ENST00000523948.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	27	2	3.82294	4.24316	4.66338	0.044228	0.0103469	0.162255	0.0850389
chr1	6618621	6618718	5466	0	+	0.463918	(0.44,0.476]	chr1	1068	14	INTRON	INTRON	PHF13	ENSG00000116273.6	ENST00000377648.5:ENST00000495385.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	53	2	3.08591	4.242955	5.4	0.00481262	7.02611e-4	0.0638089	0.024224
chr12	132637713	132637813	5448633	0	-	0.45	(0.44,0.476]	chr12	521694	3	SS5_PROX	SS5_PROX:INTRON	POLE	ENSG00000177084.18	ENST00000320574.10:ENST00000434528.4:ENST00000672742.1:ENST00000672002.1:ENST00000537064.5:ENST00000535270.5:ENST00000541213.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	53	2	3.08591	4.242955	5.4	0.00481262	7.02611e-4	0.0638089	0.024224
chr1	151057186	151057286	553364	0	-	0.57	(0.515,0.57]	chr1	65182	4	SS3_PROX	SS3_PROX:INTRON	CDC42SE1	ENSG00000197622.13	ENST00000439374.6:ENST00000540998.5:ENST00000357235.6:ENST00000483763.5:ENST00000492796.5:ENST00000470278.5:ENST00000491825.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	51	2	3.35609	4.242915	5.12974	0.00174131	4.54392e-4	0.0375363	0.0192381
chr5	132180289	132180375	2720782	0	-	0.418605	(0.408,0.44]	chr5	255745	5	INTRON	INTRON	ENSG00000224015	ENSG00000224015.1	ENST00000457890.1	lncRNA	lncRNA	lncRNA	lncRNA	2	72	2	2.55103	4.242905	5.93478	0.00587353	7.42058e-5	0.0690758	0.00770735
chr4	55611367	55611466	2150447	0	-	0.191919	[0,0.28]	chr4	211629	18	INTRON	INTRON	NMU	ENSG00000109255.11	ENST00000511469.5:ENST00000264218.7:ENST00000505262.5:ENST00000507338.1:ENST00000515325.5:ENST00000509371.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	66	2	3.3753	4.242815	5.11033	0.00991388	0.00242466	0.0838372	0.0454587
chr5	39049522	39049622	2605399	0	-	0.33	(0.32,0.35]	chr5	247896	280	INTRON	INTRON	RICTOR	ENSG00000164327.13	ENST00000357387.8:ENST00000511516.5:ENST00000296782.9:ENST00000510711.5:ENST00000513566.1:ENST00000514735.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	108	2	2.64481	4.242745	5.84068	5.97546e-4	3.015e-4	0.0222617	0.0160895
chr1	6198894	6198989	366194	0	-	0.515789	(0.515,0.57]	chr1	43029	13	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	RPL22	ENSG00000116251.11	ENST00000234875.9:ENST00000480661.1:ENST00000497965.5:ENST00000471204.5:ENST00000465387.5:ENST00000462296.5:ENST00000465335.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	95	2	2.62224	4.2426	5.86296	5.82626e-4	1.02967e-5	0.0223753	0.00235018
chr12	116099645	116099745	5423764	0	-	0.35	(0.32,0.35]	chr12	518251	25	INTRON	INTRON	MED13L	ENSG00000123066.9	ENST00000281928.9:ENST00000650226.1:ENST00000548743.2:ENST00000647567.1	protein_coding	protein_coding	protein_coding	protein_coding	1	60	2	3.65187	4.24237	4.83287	0.0095071	5.49434e-4	0.0817766	0.0213049
chr1	52399262	52399362	457018	0	-	0.52	(0.515,0.57]	chr1	54905	10	INTRON	INTRON	ORC1	ENSG00000085840.13	ENST00000371568.8:ENST00000371566.1	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	4.08538	4.24219	4.399	0.0253843	0.00708863	0.12011	0.0754923
chr11	68165416	68165515	4972706	0	-	0.545455	(0.515,0.57]	chr11	469451	59	INTRON	INTRON	KMT5B	ENSG00000110066.15	ENST00000304363.9:ENST00000615954.4:ENST00000441488.6:ENST00000427752.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	24	2	4.08538	4.24219	4.399	0.0253843	0.00708863	0.12011	0.0754923
chr15	100568947	100569044	6268687	0	-	0.515464	(0.515,0.57]	chr15	597854	22	UTR3	UTR3:EXON_MRNA:INTRON	LINS1	ENSG00000140471.17	ENST00000560783.1:ENST00000314742.13	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	24	2	4.08538	4.24219	4.399	0.0253843	0.00708863	0.12011	0.0754923
chr17	36534572	36534672	6759653	0	-	0.57	(0.515,0.57]	chr17	664596	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MYO19	ENSG00000278259.5	ENST00000614623.5:ENST00000610992.4:ENST00000621550.4:ENST00000610930.4:ENST00000621344.4:ENST00000620640.4:ENST00000616159.4:ENST00000616207.4:ENST00000613551.4:ENST00000620869.1:ENST00000610496.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	24	2	4.08538	4.24219	4.399	0.0253843	0.00708863	0.12011	0.0754923
chr17	81854893	81854960	6850056	0	-	0.522388	(0.515,0.57]	chr17	678346	1	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	P4HB	ENSG00000185624.16	ENST00000680083.1:ENST00000680416.1:ENST00000575069.6:ENST00000681030.1:ENST00000680884.1:ENST00000681161.1:ENST00000681515.1:ENST00000679470.1:ENST00000571617.2:ENST00000679688.1:ENST00000680226.1:ENST00000680400.1:ENST00000574914.2:ENST00000331483.9:ENST00000680914.1:ENST00000680593.1:ENST00000681420.1:ENST00000681693.1:ENST00000576390.6:ENST00000681835.1:ENST00000681954.1:ENST00000681566.1:ENST00000680076.1:ENST00000680105.1:ENST00000680368.1:ENST00000681872.1:ENST00000466567.3:ENST00000679396.1:ENST00000415593.6:ENST00000679889.1:ENST00000681571.1:ENST00000680719.1:ENST00000680191.1:ENST00000680547.1:ENST00000680799.1:ENST00000680208.1:ENST00000679439.1:ENST00000439918.7:ENST00000472244.6:ENST00000681031.1:ENST00000680846.1:ENST00000681068.1:ENST00000477607.7:ENST00000679366.1:ENST00000681020.1:ENST00000681614.1:ENST00000681485.1:ENST00000679628.1:ENST00000679455.1:ENST00000680259.1:ENST00000680559.1:ENST00000680909.1:ENST00000681760.1:ENST00000681933.1:ENST00000570907.6:ENST00000680732.1:ENST00000680838.1:ENST00000680847.1:ENST00000574007.6:ENST00000573778.7:ENST00000478034.5:ENST00000576380.6:ENST00000576052.2:ENST00000471535.2:ENST00000576541.2:ENST00000467086.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	24	2	4.08538	4.24219	4.399	0.0253843	0.00708863	0.12011	0.0754923
chr2	61457770	61457870	1130424	0	-	0.52	(0.515,0.57]	chr2	121499	366	INTRON	INTRON	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000453133.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	24	2	4.08538	4.24219	4.399	0.0253843	0.00708863	0.12011	0.0754923
chr21	9345431	9345531	7367587	0	+	0.54	(0.515,0.57]	chr21	751932	15	INTRON	INTRON	ENSG00000278932	ENSG00000278932.5	ENST00000622961.3:ENST00000686553.1:ENST00000691955.1:ENST00000625153.3:ENST00000692626.1:ENST00000685951.1:ENST00000686510.1:ENST00000692884.1	lncRNA	lncRNA	lncRNA	lncRNA	0	24	2	4.08538	4.24219	4.399	0.0253843	0.00708863	0.12011	0.0754923
chr3	172061326	172061426	1559761	0	+	0.54	(0.515,0.57]	chr3	161527	140	INTRON	INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000421757.5:ENST00000469491.5:ENST00000336824.8:ENST00000423424.5:ENST00000416957.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	24	2	4.08538	4.24219	4.399	0.0253843	0.00708863	0.12011	0.0754923
chr5	95805952	95806052	2432009	0	+	0.52	(0.515,0.57]	chr5	233709	97	INTRON	INTRON	RHOBTB3	ENSG00000164292.13	ENST00000513091.1	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	4.08538	4.24219	4.399	0.0253843	0.00708863	0.12011	0.0754923
chrX	75442908	75443008	7843791	0	-	0.54	(0.515,0.57]	chrX	799955	110	INTRON	INTRON	ZDHHC15	ENSG00000102383.14	ENST00000373367.8:ENST00000541184.1	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	4.08538	4.24219	4.399	0.0253843	0.00708863	0.12011	0.0754923
chr8	129951264	129951364	4063278	0	-	0.36	(0.35,0.378]	chr8	369838	18	INTRON	INTRON	CYRIB	ENSG00000153310.21	ENST00000694912.1:ENST00000523288.5:ENST00000519110.5:ENST00000401979.6:ENST00000523509.5:ENST00000517654.5:ENST00000519142.5:ENST00000518879.5:ENST00000522702.5:ENST00000521223.5:ENST00000518283.5:ENST00000523993.5:ENST00000519020.5:ENST00000518167.5:ENST00000517672.5:ENST00000522361.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	61	2	3.33403	4.242095	5.15016	0.00272701	9.78549e-4	0.0467523	0.0287765
chr4	55537607	55537706	2149816	0	-	0.454545	(0.44,0.476]	chr4	211545	272	INTRON	INTRON	CLOCK	ENSG00000134852.15	ENST00000513440.6:ENST00000381322.5:ENST00000435527.6:ENST00000506923.5:ENST00000509151.5:ENST00000513033.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	117	2	3.84092	4.241985	4.64305	2.66933e-4	1.46612e-6	0.0149989	7.23574e-4
chr16	88718181	88718274	6539489	0	-	0.505376	(0.476,0.515]	chr16	633839	5	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	PIEZO1	ENSG00000103335.22	ENST00000301015.14:ENST00000419505.5:ENST00000484567.6:ENST00000495568.7:ENST00000466823.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	305	2	3.15924	4.24196	5.32468	3.1982e-6	1.05635e-8	0.00127978	3.51053e-5
chr3	15026142	15026238	1372574	0	+	0.489583	(0.476,0.515]	chr3	144650	7	EXON_LNCRNA	EXON_LNCRNA:INTRON	NR2C2	ENSG00000177463.16	ENST00000425241.6:ENST00000323373.10:ENST00000475707.5:ENST00000393102.7:ENST00000617312.4:ENST00000406272.6:ENST00000478572.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	56	2	3.24596	4.241825	5.23769	0.00322919	5.17244e-4	0.0507087	0.0203753
chr1	28083434	28083533	408956	0	-	0.525253	(0.515,0.57]	chr1	49222	250	INTRON	INTRON	EYA3	ENSG00000158161.16	ENST00000373871.8:ENST00000540618.5:ENST00000436342.6:ENST00000373863.3:ENST00000471498.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	24	2	4.17037	4.241815	4.31326	0.0141817	0.0139194	0.10247	0.0959618
chr1	32115231	32115331	63525	0	+	0.54	(0.515,0.57]	chr1	8071	67	INTRON	INTRON	KPNA6	ENSG00000025800.14	ENST00000373625.8:ENST00000471599.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	24	2	4.17037	4.241815	4.31326	0.0141817	0.0139194	0.10247	0.0959618
chr1	54346844	54346944	463164	0	-	0.52	(0.515,0.57]	chr1	55780	111	INTRON	INTRON	SSBP3	ENSG00000157216.16	ENST00000610401.5:ENST00000357475.9:ENST00000371319.8:ENST00000417664.7:ENST00000533946.6:ENST00000326956.12:ENST00000371320.8:ENST00000525990.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	24	2	4.17037	4.241815	4.31326	0.0141817	0.0139194	0.10247	0.0959618
chr1	236429149	236429249	341374	0	+	0.54	(0.515,0.57]	chr1	39697	13	INTRON	INTRON	EDARADD	ENSG00000186197.15	ENST00000637660.1:ENST00000439430.5:ENST00000334232.9:ENST00000359362.6:ENST00000642595.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	24	2	4.17037	4.241815	4.31326	0.0141817	0.0139194	0.10247	0.0959618
chr12	112443479	112443579	5230044	0	+	0.52	(0.515,0.57]	chr12	495837	240	INTRON	INTRON	PTPN11	ENSG00000179295.19	ENST00000688597.1:ENST00000692624.1:ENST00000685487.1:ENST00000690210.1:ENST00000639857.2:ENST00000392597.5:ENST00000687906.1:ENST00000351677.7:ENST00000635625.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	24	2	4.17037	4.241815	4.31326	0.0141817	0.0139194	0.10247	0.0959618
chr16	23463731	23463826	6464093	0	-	0.536842	(0.515,0.57]	chr16	623808	3	UTR3	UTR3:EXON_MRNA	GGA2	ENSG00000103365.15	ENST00000309859.8	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	4.17037	4.241815	4.31326	0.0141817	0.0139194	0.10247	0.0959618
chr17	80548089	80548189	6684817	0	+	0.53	(0.515,0.57]	chr17	653399	19	INTRON	INTRON	RPTOR	ENSG00000141564.15	ENST00000574767.5:ENST00000577161.5:ENST00000306801.8:ENST00000649732.1:ENST00000570891.5:ENST00000544334.6:ENST00000573746.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	24	2	4.17037	4.241815	4.31326	0.0141817	0.0139194	0.10247	0.0959618
chr17	82117247	82117347	6851464	0	-	0.57	(0.515,0.57]	chr17	678956	31	INTRON	INTRON	CCDC57	ENSG00000176155.21	ENST00000694881.1:ENST00000389641.9:ENST00000694882.1:ENST00000665763.1:ENST00000578910.2:ENST00000392345.6:ENST00000583593.2:ENST00000419322.6:ENST00000392346.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	24	2	4.17037	4.241815	4.31326	0.0141817	0.0139194	0.10247	0.0959618
chr19	887967	888065	7110700	0	-	0.520408	(0.515,0.57]	chr19	714112	14	INTRON	INTRON	MED16	ENSG00000175221.16	ENST00000395808.7:ENST00000312090.10:ENST00000325464.6:ENST00000606248.5:ENST00000586017.5:ENST00000592943.5:ENST00000606828.2:ENST00000592373.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	24	2	4.17037	4.241815	4.31326	0.0141817	0.0139194	0.10247	0.0959618
chr21	46225388	46225486	7470846	0	-	0.530612	(0.515,0.57]	chr21	761544	23	INTRON	INTRON	LSS	ENSG00000160285.15	ENST00000356396.8:ENST00000397728.8:ENST00000457828.6:ENST00000522411.5:ENST00000464357.1:ENST00000450351.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	24	2	4.17037	4.241815	4.31326	0.0141817	0.0139194	0.10247	0.0959618
chr22	19141375	19141469	7552140	0	-	0.521277	(0.515,0.57]	chr22	771945	10	INTRON	INTRON	ESS2	ENSG00000100056.12	ENST00000252137.11:ENST00000434568.5:ENST00000472073.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	24	2	4.17037	4.241815	4.31326	0.0141817	0.0139194	0.10247	0.0959618
chr3	33580826	33580924	1652601	0	-	0.540816	(0.515,0.57]	chr3	169533	32	INTRON	INTRON	CLASP2	ENSG00000163539.18	ENST00000399362.8:ENST00000682230.1:ENST00000468888.6:ENST00000359576.9:ENST00000650653.1:ENST00000480013.6:ENST00000461133.8:ENST00000635664.1:ENST00000475576.1	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	4.17037	4.241815	4.31326	0.0141817	0.0139194	0.10247	0.0959618
chr4	183645451	183645551	2303177	0	-	0.56	(0.515,0.57]	chr4	222690	36	INTRON	INTRON	RWDD4	ENSG00000182552.15	ENST00000326397.10:ENST00000327570.13:ENST00000510968.5:ENST00000510702.5:ENST00000512740.1:ENST00000514322.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	24	2	4.17037	4.241815	4.31326	0.0141817	0.0139194	0.10247	0.0959618
chr6	20579054	20579154	2828831	0	+	0.54	(0.515,0.57]	chr6	265649	195	INTRON	INTRON	CDKAL1	ENSG00000145996.11	ENST00000274695.8:ENST00000378610.1	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	4.17037	4.241815	4.31326	0.0141817	0.0139194	0.10247	0.0959618
chr7	99510154	99510254	3362433	0	+	0.52	(0.515,0.57]	chr7	314086	33	INTRON	INTRON	ZKSCAN5	ENSG00000196652.12	ENST00000326775.10:ENST00000451158.5:ENST00000394170.6:ENST00000454175.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	24	2	4.17037	4.241815	4.31326	0.0141817	0.0139194	0.10247	0.0959618
chr7	136148868	136148968	3431742	0	+	0.56	(0.515,0.57]	chr7	319911	313	INTRON	INTRON	ENSG00000232053	ENSG00000232053.7	ENST00000657456.1:ENST00000668062.1:ENST00000668668.1:ENST00000445293.6:ENST00000659747.1:ENST00000668896.1:ENST00000435996.1	lncRNA	lncRNA	lncRNA	lncRNA	0	24	2	4.17037	4.241815	4.31326	0.0141817	0.0139194	0.10247	0.0959618
chr8	94887426	94887526	3994228	0	-	0.52	(0.515,0.57]	chr8	365715	1	SS5_PROX	SS5_PROX:INTRON	CCNE2	ENSG00000175305.18	ENST00000520509.5:ENST00000308108.9:ENST00000396133.7:ENST00000524224.5:ENST00000523476.5:ENST00000521809.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	24	2	4.17037	4.241815	4.31326	0.0141817	0.0139194	0.10247	0.0959618
chr16	30195427	30195527	6337013	0	+	0.46	(0.44,0.476]	chr16	607294	2	SS5_PROX	SS5_PROX:INTRON	SLX1A	ENSG00000132207.18	ENST00000251303.11:ENST00000565081.1:ENST00000345535.8:ENST00000563995.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	117	2	4.12562	4.241765	4.35791	3.66727e-5	1.84928e-5	0.00484751	0.00349761
chr11	66649535	66649635	4811143	0	+	0.27	[0,0.28]	chr11	447909	4	SS3_PROX	SS3_PROX:INTRON	RBM4	ENSG00000173933.21	ENST00000396053.9:ENST00000578778.5:ENST00000506523.6	protein_coding	protein_coding	protein_coding	protein_coding	3	106	2	2.31716	4.24167	6.16618	0.00702731	3.33131e-4	0.0754576	0.016912
chr1	90977810	90977910	502084	0	-	0.25	[0,0.28]	chr1	59497	42	INTRON	INTRON	ZNF644	ENSG00000122482.22	ENST00000370440.5:ENST00000337393.10:ENST00000347275.9:ENST00000361321.5:ENST00000467231.5:ENST00000498303.5:ENST00000474405.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	28	2	4.1879	4.24163	4.29536	0.0590175	0.0396579	0.167915	0.161534
chr1	207795129	207795225	305350	0	+	0.229167	[0,0.28]	chr1	35147	17	UTR3	UTR3:EXON_MRNA	CD46	ENSG00000117335.21	ENST00000695779.1:ENST00000695777.1:ENST00000695778.1:ENST00000496723.2:ENST00000695782.1:ENST00000695781.1:ENST00000695780.1:ENST00000636114.2:ENST00000367042.6:ENST00000322875.8:ENST00000322918.9:ENST00000354848.5:ENST00000357714.5:ENST00000358170.6:ENST00000367041.5:ENST00000367047.5:ENST00000695783.1:ENST00000695784.1:ENST00000469535.5:ENST00000360212.6:ENST00000695786.1:ENST00000490278.2:ENST00000462968.2:ENST00000695788.1:ENST00000695790.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	28	2	4.1879	4.24163	4.29536	0.0590175	0.0396579	0.167915	0.161534
chr10	74618690	74618790	4460457	0	+	0.27	[0,0.28]	chr10	411605	178	INTRON	INTRON	ADK	ENSG00000156110.15	ENST00000672429.1:ENST00000539909.6:ENST00000286621.7:ENST00000673352.1:ENST00000673310.1:ENST00000672920.1:ENST00000672394.1:ENST00000372734.5:ENST00000673027.1:ENST00000541550.6:ENST00000672604.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	28	2	4.1879	4.24163	4.29536	0.0590175	0.0396579	0.167915	0.161534
chr11	602684	602781	4719843	0	+	0.257732	[0,0.28]	chr11	436210	6	INTRON	INTRON	PHRF1	ENSG00000070047.13	ENST00000264555.10:ENST00000416188.3:ENST00000534320.5:ENST00000413872.6:ENST00000533464.5:ENST00000532550.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	28	2	4.1879	4.24163	4.29536	0.0590175	0.0396579	0.167915	0.161534
chr15	89271197	89271296	6096015	0	+	0.262626	[0,0.28]	chr15	580129	23	INTRON	INTRON	FANCI	ENSG00000140525.20	ENST00000674831.1:ENST00000300027.12:ENST00000310775.12:ENST00000696717.1:ENST00000676003.1:ENST00000696718.1:ENST00000447611.6:ENST00000696719.1:ENST00000565522.5:ENST00000561894.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	28	2	4.1879	4.24163	4.29536	0.0590175	0.0396579	0.167915	0.161534
chr17	8483942	8484039	6720522	0	-	0.278351	[0,0.28]	chr17	659480	27	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	MYH10	ENSG00000133026.14	ENST00000379980.8:ENST00000269243.8:ENST00000688902.1:ENST00000684843.1:ENST00000687178.1:ENST00000692526.1:ENST00000688497.1:ENST00000685418.1:ENST00000693441.1:ENST00000686654.1:ENST00000360416.8:ENST00000691566.1:ENST00000686521.1:ENST00000685631.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	28	2	4.1879	4.24163	4.29536	0.0590175	0.0396579	0.167915	0.161534
chr17	31289522	31289622	6593137	0	+	0.25	[0,0.28]	chr17	641260	238	INTRON	INTRON	NF1	ENSG00000196712.20	ENST00000696138.1:ENST00000356175.7:ENST00000691014.1:ENST00000358273.9:ENST00000579081.5:ENST00000456735.6:ENST00000493220.5:ENST00000687863.1:ENST00000696140.1:ENST00000696141.1:ENST00000581113.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	28	2	4.1879	4.24163	4.29536	0.0590175	0.0396579	0.167915	0.161534
chr2	38330597	38330697	1098875	0	-	0.27	[0,0.28]	chr2	117856	112	INTRON	INTRON	ATL2	ENSG00000119787.14	ENST00000378954.9:ENST00000406122.5:ENST00000405384.6:ENST00000402054.5:ENST00000419554.6:ENST00000651368.1:ENST00000452935.6:ENST00000449130.5:ENST00000443098.5:ENST00000456736.5:ENST00000474535.2:ENST00000472097.1:ENST00000451483.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	28	2	4.1879	4.24163	4.29536	0.0590175	0.0396579	0.167915	0.161534
chr20	3482406	3482506	7224551	0	+	0.28	[0,0.28]	chr20	734142	105	INTRON	INTRON	ATRN	ENSG00000088812.18	ENST00000262919.10:ENST00000446916.2	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.1879	4.24163	4.29536	0.0590175	0.0396579	0.167915	0.161534
chr20	35373683	35373783	7334814	0	-	0.27	[0,0.28]	chr20	747154	1	SS5_PROX	SS5_PROX:INTRON	UQCC1	ENSG00000101019.22	ENST00000374380.6:ENST00000374394.7:ENST00000374384.6:ENST00000359226.6:ENST00000349714.9:ENST00000457259.5:ENST00000374385.10:ENST00000453855.5:ENST00000397556.7:ENST00000424405.5:ENST00000443429.5:ENST00000438533.5:ENST00000397554.5:ENST00000491125.5:ENST00000491040.5:ENST00000397553.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	28	2	4.1879	4.24163	4.29536	0.0590175	0.0396579	0.167915	0.161534
chr5	12597077	12597177	2318805	0	+	0.28	[0,0.28]	chr5	224782	9	INTRON	INTRON	LINC01194	ENSG00000248131.6	ENST00000513051.6:ENST00000664069.1:ENST00000505196.1:ENST00000505877.5	lncRNA	lncRNA	lncRNA	lncRNA	0	28	2	4.1879	4.24163	4.29536	0.0590175	0.0396579	0.167915	0.161534
chr5	43612807	43612907	2351016	0	+	0.24	[0,0.28]	chr5	226794	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	NNT	ENSG00000112992.18	ENST00000505678.6:ENST00000512422.5:ENST00000264663.9:ENST00000652986.1:ENST00000670904.1:ENST00000653251.1:ENST00000660752.1:ENST00000654405.1:ENST00000344920.9:ENST00000657973.1:ENST00000654931.1:ENST00000657172.1:ENST00000512996.6:ENST00000658729.1:ENST00000660676.1:ENST00000671668.1:ENST00000662525.1:ENST00000669601.1:ENST00000656666.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	28	2	4.1879	4.24163	4.29536	0.0590175	0.0396579	0.167915	0.161534
chr5	173958414	173958513	2550461	0	+	0.161616	[0,0.28]	chr5	243486	24	UTR3	UTR3:EXON_MRNA	CPEB4	ENSG00000113742.14	ENST00000265085.10:ENST00000334035.9	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.1879	4.24163	4.29536	0.0590175	0.0396579	0.167915	0.161534
chr7	32537380	32537479	3303653	0	+	0.161616	[0,0.28]	chr7	306761	59	EXON_LNCRNA	EXON_LNCRNA:INTRON	AVL9	ENSG00000105778.20	ENST00000485228.1:ENST00000318709.9:ENST00000459629.1:ENST00000409301.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	28	2	4.1879	4.24163	4.29536	0.0590175	0.0396579	0.167915	0.161534
chr7	72833563	72833663	3329746	0	+	0.25	[0,0.28]	chr7	309542	4	SS3_PROX	SS3_PROX:INTRON	SBDSP1	ENSG00000225648.6	ENST00000423945.5:ENST00000685034.1:ENST00000453858.2:ENST00000691023.1:ENST00000415772.5:ENST00000456312.5:ENST00000437201.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	28	2	4.1879	4.24163	4.29536	0.0590175	0.0396579	0.167915	0.161534
chrX	120553811	120553911	7877011	0	-	0.24	[0,0.28]	chrX	802255	54	INTRON	INTRON	CUL4B	ENSG00000158290.19	ENST00000680673.1:ENST00000681253.1:ENST00000679927.1:ENST00000371322.11:ENST00000681189.1:ENST00000681080.1:ENST00000680918.1:ENST00000336592.11:ENST00000681333.1:ENST00000679405.1:ENST00000371323.3:ENST00000681206.1:ENST00000680577.1:ENST00000680324.1:ENST00000674137.11:ENST00000680165.1:ENST00000673919.1:ENST00000680457.1:ENST00000681090.1:ENST00000674073.2:ENST00000679844.1:ENST00000681908.1:ENST00000681652.1:ENST00000679432.1:ENST00000680474.1:ENST00000404115.8:ENST00000681869.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:non_stop_decay:nonsense_mediated_decay:processed_transcript	0	28	2	4.1879	4.24163	4.29536	0.0590175	0.0396579	0.167915	0.161534
chr10	27538286	27538384	4413729	0	+	0.234694	[0,0.28]	chr10	407104	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	RAB18	ENSG00000099246.18	ENST00000682082.1:ENST00000611151.5:ENST00000621805.5:ENST00000535776.6:ENST00000682518.1:ENST00000356940.11:ENST00000682852.1:ENST00000683419.1:ENST00000683816.1:ENST00000682389.1:ENST00000684393.1:ENST00000683755.1:ENST00000682181.1:ENST00000682963.1:ENST00000465772.5:ENST00000682668.1:ENST00000682173.1:ENST00000684134.1:ENST00000682777.1:ENST00000683924.1:ENST00000684191.1:ENST00000682347.1:ENST00000683030.1:ENST00000683915.1:ENST00000684457.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	67	2	3.48025	4.24144	5.00263	0.013055	0.00162172	0.093385	0.0369782
chr3	143012966	143013060	1529191	0	+	0.191489	[0,0.28]	chr3	159341	2	INTRON	INTRON	U2SURP	ENSG00000163714.18	ENST00000600150.5:ENST00000488497.7:ENST00000493782.5:ENST00000473835.7:ENST00000461591.5:ENST00000493598.6:ENST00000463563.6:ENST00000470400.5:ENST00000465175.2:ENST00000485374.5:ENST00000491827.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	67	2	3.48025	4.24144	5.00263	0.013055	0.00162172	0.093385	0.0369782
chr6	34641000	34641100	3085660	0	-	0.5	(0.476,0.515]	chr6	288679	337	INTRON	INTRON	ILRUN	ENSG00000196821.10	ENST00000374026.7:ENST00000374023.8:ENST00000374021.1	protein_coding	protein_coding	protein_coding	protein_coding	1	53	2	3.44784	4.24125	5.03466	0.00252065	0.00113238	0.0446195	0.0308465
chr16	89728344	89728441	6421738	0	+	0.453608	(0.44,0.476]	chr16	616579	6	INTRON	INTRON	ZNF276	ENSG00000158805.12	ENST00000562530.5:ENST00000289816.9:ENST00000568064.5:ENST00000563983.5:ENST00000443381.7:ENST00000568295.5:ENST00000561536.5:ENST00000563541.1:ENST00000569426.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	85	2	2.38763	4.24107	6.09451	0.00394089	3.01924e-5	0.0573041	0.00456171
chrX	154744366	154744466	7915253	0	-	0.29	(0.28,0.32]	chrX	806107	277	INTRON	INTRON	GAB3	ENSG00000160219.12	ENST00000496390.5:ENST00000424127.3:ENST00000369575.7:ENST00000369568.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	63	2	2.73945	4.240895	5.7423400000000004	0.017681	7.31742e-4	0.11319	0.0248722
chr7	156674585	156674685	3685802	0	-	0.59	(0.57,1]	chr7	341967	49	INTRON	INTRON	LMBR1	ENSG00000105983.23	ENST00000430825.3	protein_coding	processed_transcript	protein_coding	processed_transcript	2	49	2	3.35328	4.240705	5.12813	8.62401e-5	8.52328e-5	0.00825602	0.00783027
chr5	617003	617102	2313422	0	+	0.555556	(0.515,0.57]	chr5	223834	42	INTRON	INTRON	CEP72	ENSG00000112877.8	ENST00000264935.6	protein_coding	protein_coding	protein_coding	protein_coding	2	100	2	4.12784	4.24039	4.35294	4.0232e-5	6.60583e-6	0.00539487	0.00181159
chr1	31027295	31027395	412509	0	-	0.3	(0.28,0.32]	chr1	49725	198	INTRON	INTRON	PUM1	ENSG00000134644.16	ENST00000426105.7:ENST00000373747.7:ENST00000257075.9:ENST00000424085.6:ENST00000525843.5:ENST00000440538.6:ENST00000373741.8:ENST00000373742.6:ENST00000526215.5:ENST00000525948.5:ENST00000480602.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	27	2	4.14214	4.240385	4.33863	0.0579756	0.0207276	0.167723	0.122348
chr1	52496015	52496113	457989	0	-	0.306122	(0.28,0.32]	chr1	55065	1	INTRON	INTRON	TUT4	ENSG00000134744.14	ENST00000371544.7:ENST00000257177.9:ENST00000528642.5:ENST00000484723.6:ENST00000371541.5:ENST00000473856.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	27	2	4.14214	4.240385	4.33863	0.0579756	0.0207276	0.167723	0.122348
chr1	77610551	77610651	492736	0	-	0.31	(0.28,0.32]	chr1	58292	255	INTRON	INTRON	ZZZ3	ENSG00000036549.13	ENST00000370801.8:ENST00000481346.5:ENST00000476275.5:ENST00000370798.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	27	2	4.14214	4.240385	4.33863	0.0579756	0.0207276	0.167723	0.122348
chr14	19321865	19321965	5832233	0	-	0.32	(0.28,0.32]	chr14	553782	144	INTRON	INTRON	DUXAP10	ENSG00000244306.11	ENST00000648085.1:ENST00000614614.4:ENST00000612696.4:ENST00000619784.4:ENST00000616922.4:ENST00000624585.3:ENST00000549065.5	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	0	27	2	4.14214	4.240385	4.33863	0.0579756	0.0207276	0.167723	0.122348
chr14	32122582	32122682	5681742	0	+	0.32	(0.28,0.32]	chr14	541053	49	INTRON	INTRON	ARHGAP5	ENSG00000100852.14	ENST00000556611.5:ENST00000539826.6:ENST00000396582.6:ENST00000345122.8:ENST00000433497.5:ENST00000554090.1:ENST00000557643.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	27	2	4.14214	4.240385	4.33863	0.0579756	0.0207276	0.167723	0.122348
chr16	78559589	78559689	6397266	0	+	0.32	(0.28,0.32]	chr16	614809	234	INTRON	INTRON	WWOX	ENSG00000186153.18	ENST00000683929.1:ENST00000684632.1:ENST00000627394.3:ENST00000569332.5:ENST00000402655.6:ENST00000406884.6:ENST00000539474.6:ENST00000566780.6:ENST00000408984.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	27	2	4.14214	4.240385	4.33863	0.0579756	0.0207276	0.167723	0.122348
chr17	28100725	28100825	6583102	0	+	0.29	(0.28,0.32]	chr17	639837	388	INTRON	INTRON	NLK	ENSG00000087095.13	ENST00000407008.8:ENST00000496808.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	27	2	4.14214	4.240385	4.33863	0.0579756	0.0207276	0.167723	0.122348
chr17	81576562	81576662	6848984	0	-	0.31	(0.28,0.32]	chr17	678158	41	INTRON	INTRON	NPLOC4	ENSG00000182446.14	ENST00000331134.11:ENST00000374747.9:ENST00000574897.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	27	2	4.14214	4.240385	4.33863	0.0579756	0.0207276	0.167723	0.122348
chr2	199407918	199408018	1308749	0	-	0.31	(0.28,0.32]	chr2	136882	97	INTRON	INTRON	SATB2	ENSG00000119042.17	ENST00000614512.4:ENST00000417098.6:ENST00000260926.9:ENST00000443023.5:ENST00000428695.5:ENST00000457245.5:ENST00000484124.1:ENST00000440919.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	27	2	4.14214	4.240385	4.33863	0.0579756	0.0207276	0.167723	0.122348
chr22	20637410	20637510	7557907	0	-	0.31	(0.28,0.32]	chr22	772926	92	INTRON	INTRON	SMPD4P1	ENSG00000223553.6	ENST00000443839.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	27	2	4.14214	4.240385	4.33863	0.0579756	0.0207276	0.167723	0.122348
chr3	158508921	158509020	1542281	0	+	0.313131	(0.28,0.32]	chr3	160331	121	INTRON	INTRON	RSRC1	ENSG00000174891.14	ENST00000480820.5:ENST00000295930.7:ENST00000683733.1:ENST00000682221.1:ENST00000482822.3:ENST00000476899.6:ENST00000464171.5:ENST00000611884.5:ENST00000682164.1:ENST00000684604.1:ENST00000683899.1:ENST00000682500.1:ENST00000312179.10:ENST00000475278.6:ENST00000480119.5:ENST00000683137.1:ENST00000684353.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	27	2	4.14214	4.240385	4.33863	0.0579756	0.0207276	0.167723	0.122348
chr3	179149916	179150016	1565816	0	+	0.31	(0.28,0.32]	chr3	161903	2	SS5_PROX	SS5_PROX:INTRON	PIK3CA	ENSG00000121879.6	ENST00000477735.1:ENST00000263967.4:ENST00000643187.1:ENST00000675786.1:ENST00000468036.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	27	2	4.14214	4.240385	4.33863	0.0579756	0.0207276	0.167723	0.122348
chr5	32420503	32420603	2599086	0	-	0.29	(0.28,0.32]	chr5	246965	4	SS3_PROX	SS3_PROX:INTRON	ZFR	ENSG00000056097.16	ENST00000265069.13:ENST00000505366.1:ENST00000505204.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	27	2	4.14214	4.240385	4.33863	0.0579756	0.0207276	0.167723	0.122348
chr5	38952525	38952614	2604392	0	-	0.303371	(0.28,0.32]	chr5	247752	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RICTOR	ENSG00000164327.13	ENST00000357387.8:ENST00000511516.5:ENST00000296782.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	27	2	4.14214	4.240385	4.33863	0.0579756	0.0207276	0.167723	0.122348
chr5	105232996	105233096	2694756	0	-	0.32	(0.28,0.32]	chr5	254244	2237	INTRON	INTRON	ENSG00000251574:ENSG00000253584	ENSG00000251574.8:ENSG00000253584.1	ENST00000503650.1:ENST00000522464.1	lncRNA	lncRNA	lncRNA	lncRNA	0	27	2	4.14214	4.240385	4.33863	0.0579756	0.0207276	0.167723	0.122348
chr7	67294526	67294624	3541785	0	-	0.316327	(0.28,0.32]	chr7	330386	16	INTRON	INTRON	PMS2P4	ENSG00000067601.9	ENST00000685171.1:ENST00000688358.1:ENST00000692496.1:ENST00000685583.1:ENST00000688710.1:ENST00000684859.1:ENST00000685318.1:ENST00000691713.1:ENST00000686389.1:ENST00000690253.1:ENST00000688815.1:ENST00000692171.1:ENST00000692360.1:ENST00000689281.1:ENST00000690241.1:ENST00000689629.1:ENST00000689043.1:ENST00000688809.1:ENST00000687432.1:ENST00000687680.1:ENST00000686900.1:ENST00000691782.1:ENST00000693356.1:ENST00000691384.1:ENST00000690440.1:ENST00000686719.1:ENST00000686561.1:ENST00000688238.1:ENST00000687826.1:ENST00000689908.1:ENST00000689385.1:ENST00000689855.1:ENST00000691806.1:ENST00000689028.1:ENST00000688599.1:ENST00000690886.1:ENST00000688434.1:ENST00000689554.1:ENST00000414507.3:ENST00000685978.1:ENST00000689774.1:ENST00000693761.1:ENST00000690639.1:ENST00000688728.1:ENST00000689653.1:ENST00000693083.1:ENST00000691005.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	27	2	4.14214	4.240385	4.33863	0.0579756	0.0207276	0.167723	0.122348
chr7	98932740	98932840	3359819	0	+	0.31	(0.28,0.32]	chr7	313497	1	SS3_PROX	SS3_PROX:INTRON	TRRAP	ENSG00000196367.14	ENST00000355540.7:ENST00000359863.8:ENST00000628380.2:ENST00000456197.2:ENST00000446306.7	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.14214	4.240385	4.33863	0.0579756	0.0207276	0.167723	0.122348
chr15	92925847	92925947	6103952	0	+	0.32	(0.28,0.32]	chr15	581416	9	INTRON	INTRON	ENSG00000279765:CHD2	ENSG00000279765.3:ENSG00000173575.22	ENST00000629685.2:ENST00000630790.1:ENST00000626874.2:ENST00000394196.9:ENST00000635856.1:ENST00000420239.7:ENST00000628375.2:ENST00000625990.3:ENST00000626782.2:ENST00000629136.1:ENST00000637572.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	82	2	3.00291	4.240349999999999	5.47779	0.00187048	0.00110829	0.0390476	0.0305035
chr5	150445235	150445329	2751198	0	-	0.414894	(0.408,0.44]	chr5	259121	2	SS5_PROX	SS5_PROX:INTRON	RPS14	ENSG00000164587.13	ENST00000407193.7:ENST00000401695.8:ENST00000521466.5:ENST00000519690.1:ENST00000312037.6:ENST00000518139.5:ENST00000642507.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	53	2	3.08738	4.24029	5.3932	0.00478231	7.81492e-4	0.0636201	0.0257168
chr22	41096582	41096682	7521533	0	+	0.39	(0.378,0.408]	chr22	768515	31	INTRON	INTRON	EP300	ENSG00000100393.14	ENST00000263253.9:ENST00000674155.1	protein_coding	protein_coding	protein_coding	protein_coding	1	55	2	2.92665	4.240265	5.55388	0.0086017	5.01023e-4	0.083729	0.0206993
chr7	119715358	119715457	3628491	0	-	0.252525	[0,0.28]	chr7	337319	100	INTRON	INTRON	LINC02476	ENSG00000225546.6	ENST00000660268.1:ENST00000431071.5	lncRNA	lncRNA	lncRNA	lncRNA	1	65	2	3.2223	4.240225	5.25815	0.0066548	0.00422777	0.0703807	0.0595466
chr1	55150533	55150630	465236	0	-	0.28866000000000003	(0.28,0.32]	chr1	56205	16	INTRON	INTRON	USP24	ENSG00000162402.14	ENST00000294383.7:ENST00000634589.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	27	2	4.23719	4.240195	4.2432	0.0479043	0.0264147	0.153019	0.133676
chr1	93247354	93247454	163871	0	+	0.29	(0.28,0.32]	chr1	17798	4	SS5_PROX	SS5_PROX:INTRON	CCDC18	ENSG00000122483.18	ENST00000343253.11:ENST00000401026.7:ENST00000690592.1:ENST00000370276.6:ENST00000690025.1:ENST00000692873.1:ENST00000688770.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	27	2	4.23719	4.240195	4.2432	0.0479043	0.0264147	0.153019	0.133676
chr10	21849853	21849953	4577135	0	-	0.32	(0.28,0.32]	chr10	421900	434	INTRON	INTRON	DNAJC1	ENSG00000136770.11	ENST00000376980.8:ENST00000483085.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	27	2	4.23719	4.240195	4.2432	0.0479043	0.0264147	0.153019	0.133676
chr10	35445784	35445884	4425599	0	+	0.29	(0.28,0.32]	chr10	407912	112	INTRON	INTRON	CCNY	ENSG00000108100.18	ENST00000374706.5:ENST00000490012.6:ENST00000493157.6:ENST00000374704.8:ENST00000265375.13:ENST00000339497.7:ENST00000492478.5:ENST00000470025.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	27	2	4.23719	4.240195	4.2432	0.0479043	0.0264147	0.153019	0.133676
chr11	44214653	44214753	4782597	0	+	0.3	(0.28,0.32]	chr11	442219	73	INTRON	INTRON	EXT2	ENSG00000151348.16	ENST00000682993.1:ENST00000684533.1:ENST00000683000.1:ENST00000533608.7:ENST00000395673.8:ENST00000684039.1:ENST00000682815.1:ENST00000682359.1:ENST00000358681.8:ENST00000683870.1:ENST00000684124.1:ENST00000343631.4:ENST00000682711.1:ENST00000683881.1:ENST00000682947.1:ENST00000683299.1:ENST00000683204.1:ENST00000528159.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	27	2	4.23719	4.240195	4.2432	0.0479043	0.0264147	0.153019	0.133676
chr11	108775895	108775994	4859760	0	+	0.292929	(0.28,0.32]	chr11	453532	75	INTRON	INTRON	DDX10	ENSG00000178105.12	ENST00000690021.1:ENST00000686283.1:ENST00000322536.8:ENST00000648124.1:ENST00000688583.1:ENST00000686617.1:ENST00000688976.1:ENST00000687072.1:ENST00000526794.1:ENST00000692839.1:ENST00000689812.1:ENST00000534439.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	27	2	4.23719	4.240195	4.2432	0.0479043	0.0264147	0.153019	0.133676
chr12	50467919	50468019	5137025	0	+	0.29	(0.28,0.32]	chr12	484448	4	INTRON	INTRON	LARP4	ENSG00000161813.23	ENST00000293618.12:ENST00000429001.7:ENST00000398473.7:ENST00000518444.5:ENST00000347328.9:ENST00000520064.2	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.23719	4.240195	4.2432	0.0479043	0.0264147	0.153019	0.133676
chr13	41948136	41948236	5582418	0	-	0.31	(0.28,0.32]	chr13	533559	356	INTRON	INTRON	VWA8	ENSG00000102763.18	ENST00000379310.8:ENST00000281496.6	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.23719	4.240195	4.2432	0.0479043	0.0264147	0.153019	0.133676
chr15	82368662	82368762	6075667	0	+	0.29	(0.28,0.32]	chr15	578727	129	INTRON	INTRON	UBE2Q2P2	ENSG00000259429.5	ENST00000618775.4	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	27	2	4.23719	4.240195	4.2432	0.0479043	0.0264147	0.153019	0.133676
chr17	36968566	36968666	6602707	0	+	0.3	(0.28,0.32]	chr17	642673	143	INTRON	INTRON	AATF	ENSG00000275700.6	ENST00000680340.1:ENST00000680356.1:ENST00000616434.2:ENST00000680579.1:ENST00000681800.1:ENST00000680330.1:ENST00000680807.1:ENST00000679985.1:ENST00000679508.1:ENST00000619387.5:ENST00000679997.1:ENST00000613840.1:ENST00000681062.1:ENST00000679881.1:ENST00000680782.1:ENST00000679600.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	27	2	4.23719	4.240195	4.2432	0.0479043	0.0264147	0.153019	0.133676
chr18	9125396	9125496	6868828	0	+	0.3	(0.28,0.32]	chr18	680537	4	SS5_PROX	SS5_PROX:INTRON	NDUFV2	ENSG00000178127.13	ENST00000318388.11:ENST00000400033.1:ENST00000465096.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	27	2	4.23719	4.240195	4.2432	0.0479043	0.0264147	0.153019	0.133676
chr3	67603156	67603256	1733436	0	-	0.29	(0.28,0.32]	chr3	176596	736	INTRON	INTRON	SUCLG2	ENSG00000172340.15	ENST00000493112.5:ENST00000307227.10:ENST00000492795.1	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.23719	4.240195	4.2432	0.0479043	0.0264147	0.153019	0.133676
chr4	123191947	123192047	2038334	0	+	0.3	(0.28,0.32]	chr4	202384	898	INTRON	INTRON	SPATA5	ENSG00000145375.9	ENST00000675612.1:ENST00000274008.5	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.23719	4.240195	4.2432	0.0479043	0.0264147	0.153019	0.133676
chr6	97222207	97222307	3164149	0	-	0.32	(0.28,0.32]	chr6	295089	352	INTRON	INTRON	MMS22L	ENSG00000146263.12	ENST00000683635.1:ENST00000275053.8:ENST00000369251.6	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.23719	4.240195	4.2432	0.0479043	0.0264147	0.153019	0.133676
chr6	147747751	147747851	2991476	0	+	0.32	(0.28,0.32]	chr6	280177	103	INTRON	INTRON	ENSG00000227681	ENSG00000227681.5	ENST00000427015.1	lncRNA	lncRNA	lncRNA	lncRNA	0	27	2	4.23719	4.240195	4.2432	0.0479043	0.0264147	0.153019	0.133676
chr7	73568922	73569021	3555343	0	-	0.292929	(0.28,0.32]	chr7	330867	15	UTR3	UTR3:EXON_MRNA	TBL2	ENSG00000106638.18	ENST00000305632.11	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.23719	4.240195	4.2432	0.0479043	0.0264147	0.153019	0.133676
chr7	98906853	98906951	3359548	0	+	0.295918	(0.28,0.32]	chr7	313428	2	INTRON	INTRON	TRRAP	ENSG00000196367.14	ENST00000355540.7:ENST00000359863.8:ENST00000628380.2:ENST00000456197.2:ENST00000446306.7	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.23719	4.240195	4.2432	0.0479043	0.0264147	0.153019	0.133676
chr7	138496191	138496291	3435000	0	+	0.3	(0.28,0.32]	chr7	319959	345	INTRON	INTRON	TRIM24	ENSG00000122779.18	ENST00000343526.9:ENST00000415680.6:ENST00000497516.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	27	2	4.23719	4.240195	4.2432	0.0479043	0.0264147	0.153019	0.133676
chr9	19095976	19096074	4236534	0	-	0.316327	(0.28,0.32]	chr9	389429	12	INTRON	INTRON	HAUS6	ENSG00000147874.11	ENST00000380502.8	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.23719	4.240195	4.2432	0.0479043	0.0264147	0.153019	0.133676
chr9	112109251	112109351	4316114	0	-	0.29	(0.28,0.32]	chr9	396946	44	INTRON	INTRON	SUSD1	ENSG00000106868.17	ENST00000374270.8:ENST00000374263.7:ENST00000355396.7:ENST00000374264.6:ENST00000415074.1:ENST00000528773.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	27	2	4.23719	4.240195	4.2432	0.0479043	0.0264147	0.153019	0.133676
chr10	96130296	96130387	4502194	0	+	0.472527	(0.44,0.476]	chr10	414459	1	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	ZNF518A	ENSG00000177853.15	ENST00000614149.2:ENST00000488700.5:ENST00000624776.4:ENST00000539666.5:ENST00000563195.1:ENST00000316045.10	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	212	2	3.16934	4.239990000000001	5.31064	4.05843e-5	1.11491e-8	0.00539487	3.58435e-5
chr16	31119785	31119885	6340422	0	+	0.48	(0.476,0.515]	chr16	608270	2	SS3_PROX	SS3_PROX:INTRON	KAT8	ENSG00000103510.20	ENST00000543774.6:ENST00000219797.9:ENST00000448516.6:ENST00000539683.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	74	2	2.37731	4.23979	6.10227	0.0111793	2.54722e-5	0.0937192	0.00416607
chr16	11796595	11796664	6445701	0	-	0.753623	(0.57,1]	chr16	620975	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ZC3H7A	ENSG00000122299.12	ENST00000355758.9:ENST00000571198.5:ENST00000575170.1:ENST00000572781.5:ENST00000574995.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	57	2	2.94667	4.239745	5.53282	1.7758e-4	7.64124e-6	0.0121697	0.00197283
chr1	100410222	100410322	173207	0	+	0.22	[0,0.28]	chr1	18824	190	INTRON	INTRON	CDC14A	ENSG00000079335.20	ENST00000646665.1:ENST00000644844.1:ENST00000635056.2:ENST00000647005.1:ENST00000647203.1:ENST00000644676.1:ENST00000361544.11:ENST00000370124.8:ENST00000336454.5:ENST00000644813.1:ENST00000455467.6:ENST00000646563.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	72	2	2.68918	4.23955	5.78992	0.0275571	2.85302e-4	0.123904	0.0150568
chr21	6497928	6498028	7425457	0	-	0.37	(0.35,0.378]	chr21	757482	11	INTRON	INTRON	ENSG00000275895	ENSG00000275895.7	ENST00000610664.5:ENST00000639996.1:ENST00000620065.4:ENST00000624739.1:ENST00000619610.2:ENST00000636315.1:ENST00000636177.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	74	2	2.98607	4.239325	5.49258	9.86191e-4	8.19894e-4	0.0288537	0.0264086
chr19	47182893	47182993	7084405	0	+	0.47	(0.44,0.476]	chr19	708804	22	INTRON	INTRON	SAE1	ENSG00000142230.13	ENST00000413379.7:ENST00000270225.12:ENST00000598840.5:ENST00000414294.6:ENST00000660039.1:ENST00000664120.1:ENST00000596995.1:ENST00000392776.3:ENST00000659110.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	56	2	3.02751	4.23924	5.45097	0.00715968	1.90652e-4	0.0723634	0.0120089
chr9	69253369	69253462	4138949	0	+	0.365591	(0.35,0.378]	chr9	377210	6	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	TJP2	ENSG00000119139.21	ENST00000636438.1:ENST00000377245.9:ENST00000348208.9:ENST00000649114.1:ENST00000649943.1:ENST00000650333.1:ENST00000650522.1:ENST00000649783.1:ENST00000535702.6:ENST00000649134.1:ENST00000539225.2:ENST00000650084.1:ENST00000650460.1:ENST00000648042.1:ENST00000649927.1:ENST00000498204.2:ENST00000650353.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	77	2	3.26804	4.23911	5.21018	0.00228003	2.47065e-4	0.0426265	0.0139149
chr6	159732079	159732178	3022434	0	+	0.373737	(0.35,0.378]	chr6	281890	40	INTRON	INTRON	WTAP	ENSG00000146457.16	ENST00000358372.8:ENST00000650096.1:ENST00000614346.4:ENST00000621533.5:ENST00000494513.1:ENST00000631126.2:ENST00000337387.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	55	2	3.26794	4.23906	5.21018	0.00257067	0.00228003	0.0466761	0.0426265
chr7	23439395	23439495	3503356	0	-	0.57	(0.515,0.57]	chr7	326910	82	INTRON	INTRON	IGF2BP3	ENSG00000136231.14	ENST00000258729.8:ENST00000421467.6:ENST00000468263.5:ENST00000491719.5:ENST00000476938.5:ENST00000468005.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	48	2	3.31388	4.239005000000001	5.16413	0.00174704	8.14815e-4	0.0386026	0.0263656
chr10	37856594	37856688	4602590	0	-	0.319149	(0.28,0.32]	chr10	423989	4	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ZNF248	ENSG00000198105.16	ENST00000615949.6:ENST00000485560.5:ENST00000395867.8:ENST00000357328.8:ENST00000611278.4:ENST00000374648.7:ENST00000395873.7:ENST00000395874.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	89	2	2.53648	4.2388650000000005	5.94125	0.00925866	6.50094e-5	0.0817766	0.00668837
chr8	90012053	90012152	3791866	0	+	0.30303	(0.28,0.32]	chr8	351697	54	INTRON	INTRON	DECR1	ENSG00000104325.7	ENST00000519328.5:ENST00000517314.5:ENST00000521603.5:ENST00000523447.5:ENST00000517597.5:ENST00000519410.5:ENST00000220764.7:ENST00000522161.5:ENST00000519007.5:ENST00000521668.1:ENST00000518725.5:ENST00000517761.5:ENST00000520227.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	61	2	3.43186	4.238825	5.04579	0.00714672	0.00160646	0.0723634	0.0367961
chr11	603457	603554	4719851	0	+	0.536082	(0.515,0.57]	chr11	436210	14	INTRON	INTRON	PHRF1	ENSG00000070047.13	ENST00000264555.10:ENST00000416188.3:ENST00000534320.5:ENST00000413872.6:ENST00000533464.5:ENST00000532550.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	101	2	4.13835	4.238805	4.33926	2.53131e-5	1.1739e-5	0.00394111	0.00271029
chr1	150969552	150969631	553104	0	-	0.379747	(0.378,0.408]	chr1	65091	4	SS3_PROX	SS3_PROX:INTRON	CERS2	ENSG00000143418.20	ENST00000271688.10:ENST00000345896.8:ENST00000368954.10:ENST00000368949.8:ENST00000361419.9:ENST00000421609.5:ENST00000457392.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	54	2	3.05393	4.238755	5.42358	0.00551532	8.39231e-4	0.0672816	0.0266487
chr15	65758068	65758168	6209450	0	-	0.39	(0.378,0.408]	chr15	592605	12	INTRON	INTRON	DENND4A	ENSG00000174485.16	ENST00000443035.8:ENST00000431932.6:ENST00000635620.2:ENST00000564674.5:ENST00000568515.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	72	2	3.05389	4.238735	5.42358	8.39231e-4	6.75567e-4	0.0266487	0.0236067
chr16	85443913	85444013	6414269	0	+	0.56	(0.515,0.57]	chr16	615465	846	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	2	68	2	2.39351	4.23843	6.08335	0.0100431	9.19549e-6	0.0881096	0.00233911
chr6	35888512	35888611	3088494	0	-	0.313131	(0.28,0.32]	chr6	288872	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SRPK1	ENSG00000096063.16	ENST00000373825.7:ENST00000423325.6:ENST00000346162.10:ENST00000361690.7:ENST00000510290.5:ENST00000373821.6:ENST00000508473.5:ENST00000512445.5:ENST00000513367.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	144	2	4.18351	4.23839	4.29327	1.08777e-4	2.65258e-5	0.0093662	0.00405913
chr5	179618512	179618606	2779720	0	-	0.382979	(0.378,0.408]	chr5	262312	3	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	HNRNPH1	ENSG00000169045.17	ENST00000329433.11:ENST00000393432.9:ENST00000356731.9:ENST00000442819.6:ENST00000502904.5:ENST00000514332.5:ENST00000515481.5:ENST00000510411.5:ENST00000510678.5:ENST00000519958.5:ENST00000504549.5:ENST00000514731.5:ENST00000521173.5:ENST00000503105.5:ENST00000504779.6:ENST00000520415.1:ENST00000518548.5:ENST00000508103.5:ENST00000506721.5:ENST00000523137.5:ENST00000505811.5:ENST00000510431.5:ENST00000519056.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	354	2	3.82995	4.238300000000001	4.64665	1.14279e-7	2.70213e-8	1.58308e-4	6.34886e-5
chr16	88944036	88944135	6540967	0	-	0.606061	(0.57,1]	chr16	634104	23	INTRON	INTRON	CBFA2T3	ENSG00000129993.15	ENST00000268679.9:ENST00000563640.1:ENST00000570046.1	protein_coding	protein_coding	protein_coding	protein_coding	2	66	2	4.00114	4.23829	4.47544	3.23665e-5	1.31958e-6	0.00453487	7.46176e-4
chr12	76829687	76829787	5174523	0	+	0.35	(0.32,0.35]	chr12	490143	8	INTRON	INTRON	ZDHHC17	ENSG00000186908.15	ENST00000426126.7	protein_coding	protein_coding	protein_coding	protein_coding	2	85	2	2.3471	4.238265	6.12943	0.0156413	1.4081e-5	0.101393	0.00279379
chr7	158807962	158808062	3689598	0	-	0.52	(0.515,0.57]	chr7	342421	85	INTRON	INTRON	ESYT2	ENSG00000117868.18	ENST00000251527.10:ENST00000275418.13:ENST00000652148.1:ENST00000483958.5:ENST00000497111.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	182	2	3.71419	4.23826	4.76233	7.77987e-7	2.91113e-7	5.43227e-4	2.69632e-4
chr4	126438239	126438339	2235087	0	-	0.29	(0.28,0.32]	chr4	219005	29	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1:ENST00000651327.1	lncRNA	lncRNA	lncRNA	lncRNA	1	60	2	3.17453	4.23803	5.30153	0.00429297	0.00332518	0.0599065	0.0512081
chr6	109092517	109092614	3185725	0	-	0.329897	(0.32,0.35]	chr6	296646	15	INTRON	INTRON	SESN1	ENSG00000080546.14	ENST00000436639.7:ENST00000517548.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	58	2	2.96746	4.237995	5.50853	0.00815799	0.0010959399999999999	0.0810802	0.0304174
chr14	30678948	30679047	5675626	0	+	0.353535	(0.35,0.378]	chr14	540720	17	INTRON	INTRON	SCFD1	ENSG00000092108.22	ENST00000678760.1:ENST00000677690.1:ENST00000678124.1:ENST00000678716.1:ENST00000678402.1:ENST00000679153.1:ENST00000678516.1:ENST00000678802.1:ENST00000679096.1:ENST00000679102.1:ENST00000678475.1:ENST00000676509.1:ENST00000676750.1:ENST00000679165.1:ENST00000676658.1:ENST00000678399.1:ENST00000678185.1:ENST00000677027.1:ENST00000678006.1:ENST00000677413.1:ENST00000555259.5:ENST00000554437.6:ENST00000676834.1:ENST00000678858.1:ENST00000553693.6:ENST00000676914.1:ENST00000676465.1:ENST00000676812.1:ENST00000678669.1:ENST00000676520.1:ENST00000676876.1:ENST00000677617.1:ENST00000676954.1:ENST00000677456.1:ENST00000678735.1:ENST00000679342.1:ENST00000678637.1:ENST00000677176.1:ENST00000557076.6:ENST00000677637.1:ENST00000677974.1:ENST00000458591.7:ENST00000484733.6:ENST00000556768.5:ENST00000544052.6:ENST00000463622.6:ENST00000676674.1:ENST00000677340.1:ENST00000311943.11:ENST00000679075.1:ENST00000678396.1:ENST00000676473.1:ENST00000396629.6:ENST00000678579.1:ENST00000678104.1:ENST00000554819.5:ENST00000554486.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	101	2	2.36666	4.23796	6.10926	0.00212276	5.85033e-5	0.0426185	0.00668534
chr5	138319474	138319574	2732079	0	-	0.32	(0.28,0.32]	chr5	257323	1	SS3_PROX	SS3_PROX:INTRON	CDC25C	ENSG00000158402.21	ENST00000323760.11:ENST00000415130.6:ENST00000648466.1:ENST00000513970.5:ENST00000514555.5:ENST00000503022.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	100	2	2.84107	4.2379549999999995	5.63484	0.00108324	6.40806e-4	0.0303015	0.0228915
chr6	170556578	170556678	3037401	0	+	0.29	(0.28,0.32]	chr6	283112	3	SS3_PROX	SS3_PROX:INTRON	TBP	ENSG00000112592.15	ENST00000421512.5:ENST00000540980.5:ENST00000392092.7:ENST00000230354.10:ENST00000423353.1	protein_coding	protein_coding	protein_coding	protein_coding	1	66	2	2.78004	4.237875	5.69571	0.0193244	2.03259e-4	0.108861	0.0124395
chr1	88723099	88723199	156157	0	+	0.52	(0.515,0.57]	chr1	17045	381	INTRON	INTRON	PKN2	ENSG00000065243.20	ENST00000316005.11:ENST00000370521.8:ENST00000370513.9	protein_coding	protein_coding	protein_coding	protein_coding	1	48	2	3.37125	4.237864999999999	5.10448	0.00136343	0.0010345	0.0339121	0.029231300000000002
chr1	8773519	8773619	373343	0	-	0.51	(0.476,0.515]	chr1	43549	198	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000656437.1:ENST00000659924.1	protein_coding	protein_coding	protein_coding	protein_coding	3	90	2	2.31529	4.237825	6.16036	0.00614783	4.57104e-6	0.0676501	0.00144313
chr1	171507964	171508063	253439	0	+	0.272727	[0,0.28]	chr1	30096	219	INTRON	INTRON	PRRC2C	ENSG00000117523.18	ENST00000647382.2:ENST00000367742.7:ENST00000476522.5:ENST00000338920.8:ENST00000467601.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	89	2	2.96015	4.237515	5.51488	0.00314116	0.00161799	0.0500389	0.0369252
chr22	36528242	36528342	7585824	0	-	0.44	(0.408,0.44]	chr22	776358	1	SS5_PROX	SS5_PROX:INTRON	EIF3D	ENSG00000100353.18	ENST00000216190.13:ENST00000405442.5:ENST00000455547.5:ENST00000457241.5:ENST00000432675.4:ENST00000402116.2:ENST00000496875.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	58	2	3.41144	4.237435	5.06343	0.00178336	0.00101725	0.0379201	0.0293497
chr4	17840407	17840506	1927365	0	+	0.313131	(0.28,0.32]	chr4	193797	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NCAPG	ENSG00000109805.10	ENST00000251496.7:ENST00000514176.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	60	2	3.22074	4.23731	5.25388	0.00385849	0.00362783	0.055479	0.0542786
chr3	134239428	134239528	1823551	0	-	0.36	(0.35,0.378]	chr3	183484	165	INTRON	INTRON	RYK	ENSG00000163785.13	ENST00000623711.4:ENST00000460933.5:ENST00000620660.4	protein_coding	protein_coding	protein_coding	protein_coding	1	55	2	3.31736	4.237295	5.15723	0.00272706	0.00211072	0.0467523	0.0425419
chr8	123339378	123339446	4042042	0	-	0.367647	(0.35,0.378]	chr8	368683	2	CDS	CDS:UTR3:EXON_MRNA	ATAD2	ENSG00000156802.13	ENST00000287394.10:ENST00000517666.5:ENST00000521903.5:ENST00000519124.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	55	2	3.31736	4.237295	5.15723	0.00272706	0.00211072	0.0467523	0.0425419
chr9	112053436	112053536	4315547	0	-	0.46	(0.44,0.476]	chr9	396900	6	INTRON	INTRON	SUSD1	ENSG00000106868.17	ENST00000374270.8:ENST00000374263.7:ENST00000355396.7:ENST00000374264.6:ENST00000475283.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	71	2	2.59888	4.237255	5.87563	0.00487719	8.84961e-5	0.0640618	0.00842626
chr12	132090155	132090251	5250243	0	+	0.291667	(0.28,0.32]	chr12	499289	18	INTRON	INTRON	EP400P1	ENSG00000185684.16	ENST00000407361.8:ENST00000446190.5:ENST00000690966.1:ENST00000689047.1:ENST00000454179.7:ENST00000689533.1:ENST00000688036.1:ENST00000688136.1:ENST00000488030.5:ENST00000389560.6:ENST00000689403.1:ENST00000443539.6:ENST00000392352.5:ENST00000539205.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	1	60	2	3.1268	4.237225	5.34765	0.00508956	0.00287138	0.0646039	0.0474836
chr16	21471061	21471153	6461055	0	-	0.293478	(0.28,0.32]	chr16	623321	8	INTRON	INTRON	SMG1P3	ENSG00000180747.15	ENST00000522480.5:ENST00000522841.6	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	1	60	2	3.1268	4.237225	5.34765	0.00508956	0.00287138	0.0646039	0.0474836
chr14	101828809	101828908	5819179	0	+	0.434343	(0.408,0.44]	chr14	551860	35	INTRON	INTRON	PPP2R5C	ENSG00000078304.20	ENST00000694906.1:ENST00000422945.6:ENST00000554442.5:ENST00000328724.9:ENST00000553890.1:ENST00000350249.7:ENST00000557621.5:ENST00000556946.1:ENST00000556307.5:ENST00000553730.5:ENST00000557714.1:ENST00000334743.9:ENST00000445439.7:ENST00000557095.5:ENST00000556493.1:ENST00000553842.1:ENST00000556373.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	237	2	3.08601	4.237145	5.38828	3.08949e-5	5.97922e-9	0.00462932	2.59837e-5
chr5	157858229	157858329	2758646	0	-	0.35	(0.32,0.35]	chr5	260304	403	INTRON	INTRON	CLINT1	ENSG00000113282.14	ENST00000523094.5:ENST00000411809.7:ENST00000530742.5:ENST00000523908.5	protein_coding	protein_coding	protein_coding	protein_coding	5	119	2	1.93994	4.23695	6.53396	0.0084207	1.24644e-5	0.0825628	0.00280854
chr6	158787007	158787107	3253010	0	-	0.44	(0.408,0.44]	chr6	302364	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	EZR	ENSG00000092820.19	ENST00000337147.11:ENST00000367075.4:ENST00000476189.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	57	2	3.28852	4.236940000000001	5.18536	0.00287185	6.17381e-4	0.0474836	0.0223951
chr20	38004437	38004534	7341031	0	-	0.329897	(0.32,0.35]	chr20	748175	13	INTRON	INTRON	TTI1	ENSG00000101407.13	ENST00000373448.6:ENST00000373447.8:ENST00000449821.1	protein_coding	protein_coding	protein_coding	protein_coding	1	59	2	2.84569	4.23682	5.62795	0.0121137	7.01392e-4	0.0962599	0.024224
chr17	78118570	78118670	6844382	0	-	0.55	(0.515,0.57]	chr17	677120	2	SS5_PROX	SS5_PROX:INTRON	TMC6	ENSG00000141524.18	ENST00000590602.6:ENST00000592076.5:ENST00000322914.7:ENST00000392467.7:ENST00000306591.11:ENST00000593044.5:ENST00000591436.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	79	2	2.27116	4.236555	6.20195	0.00601759	4.60806e-6	0.0700813	0.00157843
chr6	30615296	30615393	3077350	0	-	0.350515	(0.35,0.378]	chr6	286294	3	INTRON	INTRON	PPP1R10	ENSG00000204569.10	ENST00000376511.7:ENST00000484449.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	62	2	3.44435	4.236335	5.02832	0.00179102	0.00156444	0.0380316	0.0365263
chr18	2723923	2724018	6865571	0	+	0.410526	(0.408,0.44]	chr18	680049	9	INTRON	INTRON	SMCHD1	ENSG00000101596.17	ENST00000320876.11:ENST00000688342.1:ENST00000693213.1:ENST00000577880.5:ENST00000584897.5:ENST00000583441.2:ENST00000690757.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	70	2	2.94481	4.236195	5.52758	0.00110214	4.54953e-4	0.03038	0.0196892
chr14	101837100	101837200	5819266	0	+	0.34	(0.32,0.35]	chr14	551873	5	INTRON	INTRON	PPP2R5C	ENSG00000078304.20	ENST00000694906.1:ENST00000422945.6:ENST00000328724.9:ENST00000350249.7:ENST00000557621.5:ENST00000556307.5:ENST00000553730.5:ENST00000334743.9:ENST00000445439.7:ENST00000557095.5:ENST00000556493.1:ENST00000556373.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	62	2	2.99125	4.23604	5.48083	0.00958447	3.35843e-4	0.0820838	0.0162819
chr2	239995245	239995343	1345421	0	-	0.5	(0.476,0.515]	chr2	141069	18	INTRON	INTRON	NDUFA10	ENSG00000130414.13	ENST00000419408.5:ENST00000679183.1:ENST00000677057.1:ENST00000676782.1:ENST00000677407.1:ENST00000676929.1:ENST00000678455.1:ENST00000252711.7:ENST00000677692.1:ENST00000476216.6:ENST00000677395.1:ENST00000678188.1:ENST00000677979.1:ENST00000678914.1:ENST00000678562.1:ENST00000678832.1:ENST00000677155.1:ENST00000677764.1:ENST00000677294.1:ENST00000678468.1:ENST00000678158.1:ENST00000676491.1:ENST00000677114.1:ENST00000404554.5:ENST00000620965.5:ENST00000485344.6:ENST00000679308.1:ENST00000677567.1:ENST00000679158.1:ENST00000443626.5:ENST00000444548.6:ENST00000448880.6:ENST00000677490.1:ENST00000307300.8:ENST00000678898.1:ENST00000677368.1:ENST00000677263.1:ENST00000678289.1:ENST00000676784.1:ENST00000414580.2:ENST00000679332.1:ENST00000678737.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	56	2	2.8863	4.235875	5.58545	0.0111679	1.04881e-4	0.0877435	0.00863456
chr8	6750006	6750105	3695426	0	+	0.494949	(0.476,0.515]	chr8	342871	18	INTRON	INTRON	AGPAT5	ENSG00000155189.12	ENST00000285518.11:ENST00000523234.5:ENST00000518327.1:ENST00000530716.1:ENST00000533159.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	56	2	2.8863	4.235875	5.58545	0.0111679	1.04881e-4	0.0877435	0.00863456
chr3	31579904	31580000	1391869	0	+	0.40625	(0.378,0.408]	chr3	145695	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	STT3B	ENSG00000163527.10	ENST00000453168.5:ENST00000295770.4:ENST00000423527.5:ENST00000462235.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	128	2	2.13567	4.235825	6.33598	0.00145781	1.31167e-5	0.0349875	0.00286967
chr1	8633577	8633677	371939	0	-	0.45	(0.44,0.476]	chr1	43533	88	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000400907.6:ENST00000656437.1:ENST00000659924.1:ENST00000480342.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	70	2	2.73781	4.23582	5.73383	0.00276493	1.70474e-4	0.04867	0.0119761
chr22	39422765	39422863	7515345	0	+	0.459184	(0.44,0.476]	chr22	767880	4	INTRON	INTRON	TAB1	ENSG00000100324.14	ENST00000216160.11:ENST00000331454.3:ENST00000473491.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	53	2	3.50584	4.2353749999999994	4.96491	0.0034249	8.66138e-4	0.0517761	0.0266729
chr1	204546296	204546396	297729	0	+	0.49	(0.476,0.515]	chr1	34320	1	SS3_PROX	SS3_PROX:INTRON	MDM4	ENSG00000198625.14	ENST00000367183.7:ENST00000391947.6:ENST00000454264.6:ENST00000612738.4:ENST00000614459.4:ENST00000616250.4:ENST00000367182.8:ENST00000463049.5:ENST00000470908.5:ENST00000507825.3:ENST00000367179.7:ENST00000444261.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	153	2	3.62777	4.235250000000001	4.84273	4.68477e-5	3.84817e-7	0.00593131	3.20286e-4
chr1	11019558	11019650	24631	0	+	0.478261	(0.476,0.515]	chr1	2593	3	INTRON	INTRON	TARDBP	ENSG00000120948.19	ENST00000473118.5:ENST00000639083.1:ENST00000639599.1:ENST00000629725.2:ENST00000439080.6:ENST00000240185.8:ENST00000472476.5:ENST00000476201.5:ENST00000614757.4:ENST00000621715.4:ENST00000473869.5:ENST00000315091.7:ENST00000616545.4:ENST00000621790.4:ENST00000649624.1:ENST00000622057.4:ENST00000617172.4:ENST00000611963.4:ENST00000619555.4:ENST00000620632.4:ENST00000610369.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	103	2	2.3399	4.2351600000000005	6.13042	0.00275491	5.46446e-6	0.0469265	0.00162138
chr1	44957760	44957860	437504	0	-	0.32	(0.28,0.32]	chr1	52959	157	INTRON	INTRON	EIF2B3	ENSG00000070785.17	ENST00000620860.4:ENST00000360403.7:ENST00000372183.7:ENST00000480675.5:ENST00000477953.5:ENST00000372182.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	28	2	3.88145	4.2351	4.58875	0.0561985	0.0230574	0.18407	0.118056
chr1	193064874	193064973	284314	0	+	0.282828	(0.28,0.32]	chr1	32673	43	INTRON	INTRON	RO60	ENSG00000116747.13	ENST00000432079.5:ENST00000400968.7:ENST00000415442.2:ENST00000460715.2:ENST00000506303.1:ENST00000367446.7:ENST00000367443.5:ENST00000367444.7:ENST00000367445.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	28	2	3.88145	4.2351	4.58875	0.0561985	0.0230574	0.18407	0.118056
chr10	50419677	50419777	4618643	0	-	0.31	(0.28,0.32]	chr10	425426	13	INTRON	INTRON	SGMS1	ENSG00000198964.14	ENST00000429490.5:ENST00000361781.7:ENST00000619438.4:ENST00000609445.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	28	2	3.88145	4.2351	4.58875	0.0561985	0.0230574	0.18407	0.118056
chr19	230264	230364	7109001	0	-	0.29	(0.28,0.32]	chr19	713718	1	SS3_PROX	SS3_PROX:INTRON	LINC01002	ENSG00000282508.2	ENST00000632624.2:ENST00000633179.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	0	28	2	3.88145	4.2351	4.58875	0.0561985	0.0230574	0.18407	0.118056
chr3	49707895	49707995	1422770	0	+	0.32	(0.28,0.32]	chr3	149879	6	INTRON	INTRON	RNF123	ENSG00000164068.16	ENST00000432042.5:ENST00000457726.5:ENST00000327697.11:ENST00000486102.5:ENST00000487805.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	28	2	3.88145	4.2351	4.58875	0.0561985	0.0230574	0.18407	0.118056
chr4	169536609	169536709	2296380	0	-	0.32	(0.28,0.32]	chr4	222186	268	INTRON	INTRON	NEK1	ENSG00000137601.18	ENST00000687054.1:ENST00000507142.6:ENST00000686697.1:ENST00000688934.1:ENST00000685111.1:ENST00000687528.1:ENST00000687643.1:ENST00000685677.1:ENST00000439128.6:ENST00000511633.5:ENST00000510533.5:ENST00000512193.5:ENST00000693604.1:ENST00000692450.1:ENST00000687219.1:ENST00000693085.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	28	2	3.88145	4.2351	4.58875	0.0561985	0.0230574	0.18407	0.118056
chr5	83069278	83069377	2666619	0	-	0.292929	(0.28,0.32]	chr5	252493	38	INTRON	INTRON	TMEM167A	ENSG00000174695.10	ENST00000502346.2:ENST00000511450.5:ENST00000504622.5:ENST00000509770.1:ENST00000503892.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	28	2	3.88145	4.2351	4.58875	0.0561985	0.0230574	0.18407	0.118056
chr5	112836655	112836754	2452895	0	+	0.313131	(0.28,0.32]	chr5	235011	11	INTRON	INTRON	APC	ENSG00000134982.17	ENST00000507379.5:ENST00000257430.9:ENST00000508624.5:ENST00000508376.6:ENST00000512211.6:ENST00000502371.2:ENST00000504915.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	28	2	3.88145	4.2351	4.58875	0.0561985	0.0230574	0.18407	0.118056
chr7	133513354	133513454	3420779	0	+	0.29	(0.28,0.32]	chr7	319376	293	INTRON	INTRON	EXOC4	ENSG00000131558.15	ENST00000486013.5:ENST00000253861.5:ENST00000486409.6:ENST00000479839.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	28	2	3.88145	4.2351	4.58875	0.0561985	0.0230574	0.18407	0.118056
chr7	154944664	154944763	3682236	0	-	0.313131	(0.28,0.32]	chr7	341749	1	INTRON	INTRON	PAXIP1	ENSG00000157212.19	ENST00000457196.5:ENST00000464717.5:ENST00000404141.6:ENST00000397192.5:ENST00000473219.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	28	2	3.88145	4.2351	4.58875	0.0561985	0.0230574	0.18407	0.118056
chr9	123843878	123843978	4345162	0	-	0.29	(0.28,0.32]	chr9	399130	455	INTRON	INTRON	DENND1A	ENSG00000119522.17	ENST00000373624.6:ENST00000394215.7:ENST00000373620.7:ENST00000373618.1	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	3.88145	4.2351	4.58875	0.0561985	0.0230574	0.18407	0.118056
chr1	155679827	155679927	563232	0	-	0.41	(0.408,0.44]	chr1	67194	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	YY1AP1	ENSG00000163374.20	ENST00000368339.9:ENST00000295566.8:ENST00000368330.6:ENST00000436865.5:ENST00000359205.9:ENST00000407221.5:ENST00000404643.5:ENST00000361140.8:ENST00000361831.9:ENST00000347088.9:ENST00000354691.9:ENST00000368340.9:ENST00000311573.9:ENST00000355499.9:ENST00000405763.7:ENST00000493625.5:ENST00000476093.5:ENST00000443231.5:ENST00000496324.5:ENST00000476027.5:ENST00000454523.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	107	2	2.41161	4.234975	6.05834	8.34334e-4	4.06336e-5	0.0263691	0.00539487
chr8	37873179	37873278	3935678	0	-	0.414141	(0.408,0.44]	chr8	360560	1	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	RAB11FIP1	ENSG00000156675.16	ENST00000330843.9:ENST00000287263.8:ENST00000522727.5:ENST00000523182.5:ENST00000522774.1:ENST00000524118.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	184	2	3.80239	4.234954999999999	4.66752	3.26573e-6	1.1678e-6	0.00128387	6.23613e-4
chr16	67138491	67138590	6366569	0	+	0.444444	(0.44,0.476]	chr16	611493	23	INTRON	INTRON	PHAF1	ENSG00000125149.12	ENST00000219139.8:ENST00000563853.6:ENST00000569914.5:ENST00000569600.5	protein_coding	protein_coding	protein_coding	protein_coding	1	53	2	3.02366	4.23493	5.4462	0.00603307	5.83686e-4	0.0700813	0.0223753
chr7	105341360	105341460	3603430	0	-	0.47	(0.44,0.476]	chr7	336161	344	INTRON	INTRON	SRPK2	ENSG00000135250.17	ENST00000393651.8:ENST00000482897.5:ENST00000460391.5:ENST00000462282.5:ENST00000465112.5:ENST00000482862.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	53	2	3.02366	4.23493	5.4462	0.00603307	5.83686e-4	0.0700813	0.0223753
chr3	142379083	142379183	1836916	0	-	0.45	(0.44,0.476]	chr3	184595	21	INTRON	INTRON	XRN1	ENSG00000114127.11	ENST00000264951.8:ENST00000392981.7:ENST00000498077.6:ENST00000472697.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	58	2	3.4718	4.2348099999999995	4.99782	0.00136358	0.0013223	0.0336321	0.0333932
chr1	155310553	155310653	229175	0	+	0.61	(0.57,1]	chr1	26848	1	SS5_PROX	SS5_PROX:INTRON	FDPS	ENSG00000160752.15	ENST00000611010.4:ENST00000468479.5:ENST00000447866.5:ENST00000461507.5:ENST00000474345.5:ENST00000471117.5:ENST00000368356.9:ENST00000467076.5:ENST00000495308.5:ENST00000491013.5:ENST00000487002.1:ENST00000356657.10:ENST00000465559.5:ENST00000470171.5:ENST00000612683.1:ENST00000489003.5:ENST00000477057.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	63	2	2.8972	4.234395	5.57159	6.94474e-5	9.47307e-6	0.00690574	0.00236268
chr1	30891996	30892096	411349	0	-	0.62	(0.57,1]	chr1	49595	107	INTRON	INTRON	SDC3	ENSG00000162512.16	ENST00000339394.7	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	3.13254	4.23431	5.33608	0.00310655	3.92497e-5	0.0512344	0.00533644
chr11	9285758	9285856	4909138	0	-	0.346939	(0.32,0.35]	chr11	460131	18	INTRON	INTRON	TMEM41B	ENSG00000166471.11	ENST00000524543.5:ENST00000528080.6:ENST00000299596.8:ENST00000611268.4:ENST00000533867.1:ENST00000527813.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	57	2	3.18392	4.23421	5.2845	0.00379806	0.00240071	0.0562562	0.0440612
chr2	39053158	39053255	1101653	0	-	0.340206	(0.32,0.35]	chr2	118279	14	INTRON	INTRON	SOS1	ENSG00000115904.15	ENST00000692089.1:ENST00000402219.8:ENST00000690876.1:ENST00000395038.6:ENST00000691229.1:ENST00000689668.1:ENST00000690679.1:ENST00000461545.2:ENST00000685782.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	57	2	3.18392	4.23421	5.2845	0.00379806	0.00240071	0.0562562	0.0440612
chr1	171505272	171505372	253412	0	+	0.45	(0.44,0.476]	chr1	30096	192	INTRON	INTRON	PRRC2C	ENSG00000117523.18	ENST00000647382.2:ENST00000367742.7:ENST00000476522.5:ENST00000338920.8:ENST00000467601.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	54	2	3.63638	4.2341999999999995	4.83202	0.00525002	4.74104e-4	0.0633615	0.0196816
chr2	25798291	25798390	1084732	0	-	0.363636	(0.35,0.378]	chr2	115929	38	INTRON	INTRON	ASXL2	ENSG00000143970.18	ENST00000435504.9:ENST00000336112.9:ENST00000497092.1	protein_coding	protein_coding	protein_coding	protein_coding	1	55	2	3.36514	4.2337	5.10226	0.00327038	0.00173699	0.0508595	0.03851
chr1	180485078	180485178	595658	0	-	0.35	(0.32,0.35]	chr1	71198	545	INTRON	INTRON	ACBD6	ENSG00000230124.8	ENST00000645415.1:ENST00000642319.1:ENST00000367595.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	28	2	3.77344	4.23362	4.6938	0.0596635	0.0137794	0.189982	0.0949306
chr7	148795913	148796013	3444680	0	+	0.33	(0.32,0.35]	chr7	321272	27	INTRON	INTRON	CUL1	ENSG00000055130.18	ENST00000409469.5:ENST00000662716.1:ENST00000665936.1:ENST00000663044.1:ENST00000602748.5:ENST00000663835.1:ENST00000655324.1:ENST00000662132.1:ENST00000325222.9:ENST00000656001.1:ENST00000666124.1:ENST00000671421.1:ENST00000671397.1:ENST00000662670.1:ENST00000660240.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	28	2	3.77344	4.23362	4.6938	0.0596635	0.0137794	0.189982	0.0949306
chr8	125089316	125089416	4047152	0	-	0.35	(0.32,0.35]	chr8	369249	49	INTRON	INTRON	WASHC5	ENSG00000164961.16	ENST00000318410.12:ENST00000517845.5:ENST00000523297.5:ENST00000519340.5:ENST00000521109.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	28	2	3.77344	4.23362	4.6938	0.0596635	0.0137794	0.189982	0.0949306
chr6	34673055	34673155	3085983	0	-	0.34	(0.32,0.35]	chr6	288696	12	INTRON	INTRON	ILRUN	ENSG00000196821.10	ENST00000374026.7:ENST00000374023.8	protein_coding	protein_coding	protein_coding	protein_coding	2	78	2	3.08864	4.233485	5.37833	0.00174321	6.64579e-4	0.0375363	0.0233423
chr16	70378044	70378142	6510844	0	-	0.295918	(0.28,0.32]	chr16	630648	22	UTR3	UTR3:EXON_MRNA	ST3GAL2	ENSG00000157350.13	ENST00000342907.3:ENST00000393640.8	protein_coding	protein_coding	protein_coding	protein_coding	1	67	2	3.2685	4.23346	5.19842	0.00432734	0.00152333	0.0579331	0.0360297
chr1	50856728	50856828	451220	0	-	0.32	(0.28,0.32]	chr1	54261	547	INTRON	INTRON	FAF1	ENSG00000185104.21	ENST00000396153.7:ENST00000487898.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	27	2	4.03345	4.233425	4.4334	0.0704058	0.0163355	0.184298	0.109464
chr1	77625549	77625649	492886	0	-	0.31	(0.28,0.32]	chr1	58292	405	INTRON	INTRON	ZZZ3	ENSG00000036549.13	ENST00000370801.8:ENST00000481346.5:ENST00000476275.5:ENST00000370798.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	27	2	4.03345	4.233425	4.4334	0.0704058	0.0163355	0.184298	0.109464
chr1	88724398	88724498	156170	0	+	0.31	(0.28,0.32]	chr1	17045	394	INTRON	INTRON	PKN2	ENSG00000065243.20	ENST00000316005.11:ENST00000370521.8:ENST00000370513.9	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.03345	4.233425	4.4334	0.0704058	0.0163355	0.184298	0.109464
chr1	172587305	172587401	255252	0	+	0.302083	(0.28,0.32]	chr1	30445	10	INTRON	INTRON	SUCO	ENSG00000094975.14	ENST00000367723.8:ENST00000608151.5:ENST00000616058.4:ENST00000263688.4:ENST00000610051.5	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.03345	4.233425	4.4334	0.0704058	0.0163355	0.184298	0.109464
chr1	180376029	180376129	594564	0	-	0.29	(0.28,0.32]	chr1	71180	491	INTRON	INTRON	ACBD6	ENSG00000230124.8	ENST00000645415.1:ENST00000642319.1:ENST00000496993.5:ENST00000475338.2:ENST00000367595.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	27	2	4.03345	4.233425	4.4334	0.0704058	0.0163355	0.184298	0.109464
chr10	26795139	26795239	4583841	0	-	0.3	(0.28,0.32]	chr10	422397	175	INTRON	INTRON	ABI1	ENSG00000136754.18	ENST00000376138.7:ENST00000376166.5:ENST00000376160.5:ENST00000376139.6:ENST00000376142.6:ENST00000359188.8:ENST00000376170.8:ENST00000536334.5:ENST00000490841.6:ENST00000376137.8:ENST00000376140.4:ENST00000346832.10:ENST00000473481.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	27	2	4.03345	4.233425	4.4334	0.0704058	0.0163355	0.184298	0.109464
chr10	124927465	124927565	4535364	0	+	0.29	(0.28,0.32]	chr10	418562	98	INTRON	INTRON	ENSG00000249456	ENSG00000249456.1	ENST00000508096.1	lncRNA	lncRNA	lncRNA	lncRNA	0	27	2	4.03345	4.233425	4.4334	0.0704058	0.0163355	0.184298	0.109464
chr11	9412170	9412269	4729693	0	+	0.30303	(0.28,0.32]	chr11	437850	17	INTRON	INTRON	IPO7	ENSG00000205339.10	ENST00000379719.8:ENST00000527431.1:ENST00000528833.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	27	2	4.03345	4.233425	4.4334	0.0704058	0.0163355	0.184298	0.109464
chr11	134178307	134178394	5054699	0	-	0.287356	(0.28,0.32]	chr11	477127	3	SS5_PROX	SS5_PROX:INTRON	NCAPD3	ENSG00000151503.14	ENST00000534548.7:ENST00000692494.1:ENST00000688672.1:ENST00000534532.7:ENST00000689387.1:ENST00000688263.1:ENST00000525964.7:ENST00000690149.1:ENST00000687480.1:ENST00000690743.1:ENST00000685324.1:ENST00000689205.1:ENST00000530396.2:ENST00000525432.2:ENST00000687155.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	27	2	4.03345	4.233425	4.4334	0.0704058	0.0163355	0.184298	0.109464
chr12	45824171	45824270	5123665	0	+	0.292929	(0.28,0.32]	chr12	483325	23	INTRON	INTRON	ARID2	ENSG00000189079.17	ENST00000334344.11:ENST00000422737.6	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.03345	4.233425	4.4334	0.0704058	0.0163355	0.184298	0.109464
chr14	37053789	37053889	5876825	0	-	0.32	(0.28,0.32]	chr14	558013	1784	INTRON	INTRON	SLC25A21	ENSG00000183032.12	ENST00000331299.6:ENST00000555449.5:ENST00000557611.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	27	2	4.03345	4.233425	4.4334	0.0704058	0.0163355	0.184298	0.109464
chr17	61901296	61901394	6809330	0	-	0.285714	(0.28,0.32]	chr17	672733	32	INTRON	INTRON	INTS2	ENSG00000108506.13	ENST00000251334.7:ENST00000617492.4:ENST00000444766.7:ENST00000646745.1:ENST00000647009.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	27	2	4.03345	4.233425	4.4334	0.0704058	0.0163355	0.184298	0.109464
chr17	76063675	76063775	6840145	0	-	0.32	(0.28,0.32]	chr17	676451	3	SS5_PROX	SS5_PROX:INTRON	SRP68	ENSG00000167881.15	ENST00000307877.7:ENST00000539137.5:ENST00000592704.5:ENST00000587864.1:ENST00000585539.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	27	2	4.03345	4.233425	4.4334	0.0704058	0.0163355	0.184298	0.109464
chr2	61362249	61362349	1129458	0	-	0.32	(0.28,0.32]	chr2	121448	112	INTRON	INTRON	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000453133.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	27	2	4.03345	4.233425	4.4334	0.0704058	0.0163355	0.184298	0.109464
chr2	85012235	85012335	820674	0	+	0.31	(0.28,0.32]	chr2	91419	396	INTRON	INTRON	KCMF1	ENSG00000176407.18	ENST00000456682.1:ENST00000409785.9:ENST00000428691.5:ENST00000453448.1	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.03345	4.233425	4.4334	0.0704058	0.0163355	0.184298	0.109464
chr2	105059033	105059133	843147	0	+	0.31	(0.28,0.32]	chr2	94414	93	INTRON	INTRON	MRPS9	ENSG00000135972.9	ENST00000258455.8	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.03345	4.233425	4.4334	0.0704058	0.0163355	0.184298	0.109464
chr21	43099768	43099866	7468261	0	-	0.316327	(0.28,0.32]	chr21	761110	23	EXON_MRNA	EXON_MRNA:INTRON	U2AF1	ENSG00000160201.12	ENST00000291552.9:ENST00000380276.6:ENST00000464750.5:ENST00000475639.5:ENST00000459639.5:ENST00000486519.5:ENST00000463599.5:ENST00000496462.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	27	2	4.03345	4.233425	4.4334	0.0704058	0.0163355	0.184298	0.109464
chr3	130946071	130946170	1503446	0	+	0.313131	(0.28,0.32]	chr3	157243	40	INTRON	INTRON	ATP2C1	ENSG00000017260.20	ENST00000504381.5:ENST00000505330.5:ENST00000507488.6:ENST00000508532.5:ENST00000533801.6:ENST00000510168.6:ENST00000513801.5:ENST00000504948.5:ENST00000328560.12:ENST00000428331.6:ENST00000422190.6:ENST00000359644.7:ENST00000504612.5	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.03345	4.233425	4.4334	0.0704058	0.0163355	0.184298	0.109464
chr3	167722443	167722541	1853925	0	-	0.316327	(0.28,0.32]	chr3	186320	18	INTRON	INTRON	PDCD10	ENSG00000114209.15	ENST00000392750.7:ENST00000473645.6:ENST00000497056.6:ENST00000492396.5:ENST00000461494.5:ENST00000470131.5:ENST00000475915.6:ENST00000487947.6:ENST00000471885.5:ENST00000462725.6:ENST00000492139.5:ENST00000483451.5:ENST00000494502.6:ENST00000464360.5:ENST00000481136.1:ENST00000487678.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	27	2	4.03345	4.233425	4.4334	0.0704058	0.0163355	0.184298	0.109464
chr3	172157663	172157763	1560731	0	+	0.32	(0.28,0.32]	chr3	161551	87	INTRON	INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000421757.5:ENST00000469491.5:ENST00000336824.8:ENST00000423424.5:ENST00000416957.5:ENST00000478016.1:ENST00000443501.1:ENST00000476794.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	27	2	4.03345	4.233425	4.4334	0.0704058	0.0163355	0.184298	0.109464
chr7	73508126	73508226	3554957	0	-	0.3	(0.28,0.32]	chr7	330802	4	SS5_PROX	SS5_PROX:INTRON	BAZ1B	ENSG00000009954.11	ENST00000339594.9:ENST00000404251.1	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.03345	4.233425	4.4334	0.0704058	0.0163355	0.184298	0.109464
chr7	107432228	107432328	3611707	0	-	0.32	(0.28,0.32]	chr7	336694	192	INTRON	INTRON	COG5	ENSG00000164597.15	ENST00000297135.9:ENST00000347053.8:ENST00000393603.7:ENST00000484237.5:ENST00000475638.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	27	2	4.03345	4.233425	4.4334	0.0704058	0.0163355	0.184298	0.109464
chrX	71572923	71573021	7680371	0	+	0.295918	(0.28,0.32]	chrX	786480	45	INTRON	INTRON	OGT	ENSG00000147162.14	ENST00000373719.8:ENST00000488174.5:ENST00000373701.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	27	2	4.03345	4.233425	4.4334	0.0704058	0.0163355	0.184298	0.109464
chr19	5597393	5597493	7124091	0	-	0.24	[0,0.28]	chr19	716986	15	INTRON	INTRON	SAFB2	ENSG00000130254.12	ENST00000252542.9	protein_coding	protein_coding	protein_coding	protein_coding	2	164	2	3.82325	4.23338	4.64351	7.47357e-4	6.18711e-6	0.0251179	0.00174813
chr1	40719608	40719707	82641	0	+	0.353535	(0.35,0.378]	chr1	10720	64	INTRON	INTRON	NFYC	ENSG00000066136.21	ENST00000467203.5:ENST00000424419.6:ENST00000427410.6:ENST00000447388.8:ENST00000425457.6:ENST00000453631.5:ENST00000456393.6:ENST00000372654.5:ENST00000534399.5:ENST00000372653.5:ENST00000372669.8:ENST00000372652.5:ENST00000372651.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	26	2	3.97032	4.23329	4.49626	0.0578667	0.00917582	0.167723	0.0855292
chr1	43732942	43733041	86339	0	+	0.353535	(0.35,0.378]	chr1	11645	231	INTRON	INTRON	ST3GAL3	ENSG00000126091.21	ENST00000646096.1:ENST00000532911.6:ENST00000643597.1:ENST00000643886.1:ENST00000372372.7:ENST00000545417.5:ENST00000330208.6:ENST00000335430.10:ENST00000361400.9:ENST00000347631.8:ENST00000642331.1:ENST00000647237.1:ENST00000643252.1:ENST00000372374.7:ENST00000361392.9:ENST00000646109.1:ENST00000533997.6:ENST00000353126.8:ENST00000645640.1:ENST00000642934.1:ENST00000643283.1:ENST00000351035.8:ENST00000642949.1:ENST00000489897.6:ENST00000646971.1:ENST00000645142.1:ENST00000645705.1:ENST00000530154.5:ENST00000646027.1:ENST00000646069.1:ENST00000642504.1:ENST00000647148.1:ENST00000262915.8:ENST00000479383.6:ENST00000647482.1:ENST00000646776.1:ENST00000645394.1:ENST00000647128.1:ENST00000484868.2:ENST00000461066.6:ENST00000361746.9:ENST00000645034.1:ENST00000645165.1:ENST00000647134.1:ENST00000644195.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	26	2	3.97032	4.23329	4.49626	0.0578667	0.00917582	0.167723	0.0855292
chr1	200972831	200972929	618263	0	-	0.357143	(0.35,0.378]	chr1	73169	36	UTR3	UTR3:EXON_MRNA	KIF21B	ENSG00000116852.15	ENST00000461742.7:ENST00000332129.6	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	3.97032	4.23329	4.49626	0.0578667	0.00917582	0.167723	0.0855292
chr16	4823527	4823623	6438778	0	-	0.364583	(0.35,0.378]	chr16	620184	2	SS5_PROX	SS5_PROX:INTRON	GLYR1	ENSG00000140632.17	ENST00000321919.14:ENST00000436648.9:ENST00000588732.5:ENST00000589389.5:ENST00000591451.5:ENST00000588297.5:ENST00000587297.1:ENST00000586901.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	26	2	3.97032	4.23329	4.49626	0.0578667	0.00917582	0.167723	0.0855292
chr16	56464973	56465070	6359699	0	+	0.371134	(0.35,0.378]	chr16	610368	20	INTRON	INTRON	OGFOD1	ENSG00000087263.17	ENST00000561646.5:ENST00000562150.5:ENST00000569802.5:ENST00000336111.9:ENST00000568172.1:ENST00000566157.6:ENST00000568397.1:ENST00000565209.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	26	2	3.97032	4.23329	4.49626	0.0578667	0.00917582	0.167723	0.0855292
chr2	95864253	95864353	1178404	0	-	0.36	(0.35,0.378]	chr2	125761	38	INTRON	INTRON	ANKRD36C	ENSG00000174501.15	ENST00000295246.7:ENST00000456556.5:ENST00000531153.5:ENST00000534304.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	26	2	3.97032	4.23329	4.49626	0.0578667	0.00917582	0.167723	0.0855292
chr3	43582069	43582169	1675041	0	-	0.36	(0.35,0.378]	chr3	171020	12	INTRON	INTRON	ANO10	ENSG00000160746.13	ENST00000292246.8:ENST00000350459.8:ENST00000396091.7:ENST00000414522.6:ENST00000451430.6:ENST00000427171.5:ENST00000428472.5	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	3.97032	4.23329	4.49626	0.0578667	0.00917582	0.167723	0.0855292
chr3	100380824	100380921	1756447	0	-	0.360825	(0.35,0.378]	chr3	178174	26	INTRON	INTRON	TOMM70	ENSG00000154174.8	ENST00000284320.6:ENST00000492171.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	26	2	3.97032	4.23329	4.49626	0.0578667	0.00917582	0.167723	0.0855292
chr16	23902948	23903047	6324430	0	+	0.30303	(0.28,0.32]	chr16	605701	92	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000498739.1	protein_coding	protein_coding	protein_coding	protein_coding	6	293	2	3.45546	4.233115	5.01077	2.84408e-6	1.56049e-6	0.00107764	8.28276e-4
chr18	31903007	31903105	6960988	0	-	0.459184	(0.44,0.476]	chr18	688740	16	INTRON	INTRON	TRAPPC8	ENSG00000153339.15	ENST00000283351.10:ENST00000580104.5:ENST00000582539.5:ENST00000582513.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	75	2	2.59632	4.233115	5.86991	0.00579248	2.27008e-5	0.0662959	0.00372337
chr3	129180003	129180102	1815291	0	-	0.222222	[0,0.28]	chr3	182484	79	INTRON	INTRON	CNBP	ENSG00000169714.17	ENST00000422453.7:ENST00000502976.5:ENST00000451728.6:ENST00000446936.6:ENST00000504813.5:ENST00000500450.6:ENST00000441626.6:ENST00000502372.1:ENST00000512338.1:ENST00000507573.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	71	2	2.86008	4.232995	5.60591	0.0177015	6.01442e-4	0.105304	0.0223465
chrX	48929712	48929811	7815790	0	-	0.272727	[0,0.28]	chrX	796844	33	INTRON	INTRON	OTUD5	ENSG00000068308.15	ENST00000376488.8:ENST00000396743.7:ENST00000455452.5:ENST00000156084.8:ENST00000428668.2:ENST00000484499.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	71	2	2.89982	4.232965	5.56611	0.0158893	7.02173e-4	0.101453	0.0241881
chrX	131707702	131707802	7891752	0	-	0.5	(0.476,0.515]	chrX	803384	38	INTRON	INTRON	FIRRE	ENSG00000213468.7	ENST00000649541.1:ENST00000662867.1:ENST00000663405.1:ENST00000665076.1:ENST00000637577.2:ENST00000654978.1:ENST00000647966.1:ENST00000649391.1:ENST00000648028.2:ENST00000427391.2	lncRNA	lncRNA	lncRNA	lncRNA	1	53	2	3.01197	4.2329349999999994	5.4539	0.00633162	5.16081e-4	0.0722266	0.0208667
chr6	35378117	35378217	2852334	0	+	0.53	(0.515,0.57]	chr6	269491	306	INTRON	INTRON	PPARD	ENSG00000112033.14	ENST00000418635.6:ENST00000448077.6:ENST00000360694.8:ENST00000311565.4:ENST00000337400.6	protein_coding	protein_coding	protein_coding	protein_coding	1	49	2	3.62821	4.232925	4.83764	0.00279527	4.12866e-4	0.0469265	0.0181365
chr1	114480674	114480774	527594	0	-	0.31	(0.28,0.32]	chr1	62153	159	INTRON	INTRON	TRIM33	ENSG00000197323.12	ENST00000358465.7:ENST00000369543.6	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.12807	4.2328600000000005	4.33765	0.039714	0.0338135	0.146709	0.143072
chr1	247155480	247155579	683704	0	-	0.313131	(0.28,0.32]	chr1	80156	6	UTR3	UTR3:EXON_MRNA:INTRON	ZNF124	ENSG00000196418.13	ENST00000472531.5:ENST00000491356.5:ENST00000543802.3	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.12807	4.2328600000000005	4.33765	0.039714	0.0338135	0.146709	0.143072
chr10	27167574	27167674	4413150	0	+	0.32	(0.28,0.32]	chr10	407008	3	SS5_PROX	SS5_PROX:INTRON	MASTL	ENSG00000120539.15	ENST00000375946.8:ENST00000375940.9:ENST00000342386.10	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.12807	4.2328600000000005	4.33765	0.039714	0.0338135	0.146709	0.143072
chr10	63355072	63355172	4634281	0	-	0.3	(0.28,0.32]	chr10	426226	860	INTRON	INTRON	JMJD1C	ENSG00000171988.20	ENST00000399262.7:ENST00000633035.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	27	2	4.12807	4.2328600000000005	4.33765	0.039714	0.0338135	0.146709	0.143072
chr13	28282960	28283058	5462293	0	+	0.295918	(0.28,0.32]	chr13	523331	12	INTRON	INTRON	PAN3	ENSG00000152520.14	ENST00000380958.8:ENST00000399613.1	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.12807	4.2328600000000005	4.33765	0.039714	0.0338135	0.146709	0.143072
chr16	20845530	20845625	6318367	0	+	0.305263	(0.28,0.32]	chr16	604783	3	SS5_PROX	SS5_PROX:INTRON	REXO5	ENSG00000005189.20	ENST00000566993.5:ENST00000348433.10:ENST00000261377.11:ENST00000564274.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	27	2	4.12807	4.2328600000000005	4.33765	0.039714	0.0338135	0.146709	0.143072
chr16	70405085	70405185	6511124	0	-	0.31	(0.28,0.32]	chr16	630689	36	INTRON	INTRON	ST3GAL2	ENSG00000157350.13	ENST00000342907.3:ENST00000566097.1:ENST00000561708.1:ENST00000567586.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	27	2	4.12807	4.2328600000000005	4.33765	0.039714	0.0338135	0.146709	0.143072
chr19	1092689	1092783	7111185	0	-	0.308511	(0.28,0.32]	chr19	714271	4	INTRON	INTRON	POLR2E	ENSG00000099817.12	ENST00000615234.5:ENST00000586746.5:ENST00000612655.4:ENST00000589737.5:ENST00000591767.5:ENST00000215587.11:ENST00000586817.5:ENST00000619917.4:ENST00000585838.2:ENST00000614705.4:ENST00000591709.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	27	2	4.12807	4.2328600000000005	4.33765	0.039714	0.0338135	0.146709	0.143072
chr2	135974978	135975078	1234603	0	-	0.29	(0.28,0.32]	chr2	131426	131	INTRON	INTRON	DARS1	ENSG00000115866.11	ENST00000264161.9:ENST00000441323.5:ENST00000456565.5:ENST00000449218.5:ENST00000435076.1:ENST00000463008.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	27	2	4.12807	4.2328600000000005	4.33765	0.039714	0.0338135	0.146709	0.143072
chr3	15741211	15741310	1623250	0	-	0.313131	(0.28,0.32]	chr3	167993	36	INTRON	INTRON	ANKRD28	ENSG00000206560.12	ENST00000399451.6:ENST00000624145.3:ENST00000683139.1:ENST00000412318.5:ENST00000497037.5:ENST00000451422.1:ENST00000498524.5:ENST00000476472.5:ENST00000460278.5:ENST00000439830.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	27	2	4.12807	4.2328600000000005	4.33765	0.039714	0.0338135	0.146709	0.143072
chr3	185670249	185670348	1884788	0	-	0.292929	(0.28,0.32]	chr3	188520	115	INTRON	INTRON	IGF2BP2	ENSG00000073792.16	ENST00000382199.7:ENST00000346192.7:ENST00000457616.6:ENST00000421047.3:ENST00000494906.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	27	2	4.12807	4.2328600000000005	4.33765	0.039714	0.0338135	0.146709	0.143072
chr4	152795213	152795313	2065278	0	+	0.31	(0.28,0.32]	chr4	204403	146	INTRON	INTRON	ARFIP1	ENSG00000164144.16	ENST00000451320.6:ENST00000429148.6:ENST00000353617.7:ENST00000405727.6:ENST00000356064.3:ENST00000510831.5:ENST00000509413.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	27	2	4.12807	4.2328600000000005	4.33765	0.039714	0.0338135	0.146709	0.143072
chr7	64698056	64698154	3320206	0	+	0.306122	(0.28,0.32]	chr7	308692	8	EXON_LNCRNA	EXON_LNCRNA:INTRON	ZNF107	ENSG00000196247.13	ENST00000395391.2:ENST00000684016.1:ENST00000620827.6:ENST00000423627.6:ENST00000613690.5:ENST00000344930.7:ENST00000682671.1:ENST00000683971.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	27	2	4.12807	4.2328600000000005	4.33765	0.039714	0.0338135	0.146709	0.143072
chr8	60622560	60622659	3758879	0	+	0.313131	(0.28,0.32]	chr8	349553	19	UTR3	UTR3:EXON_MRNA	RAB2A	ENSG00000104388.15	ENST00000262646.12	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.12807	4.2328600000000005	4.33765	0.039714	0.0338135	0.146709	0.143072
chr8	129389527	129389627	4059161	0	-	0.3	(0.28,0.32]	chr8	369566	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1:ENST00000676273.1:ENST00000667643.1:ENST00000668791.1:ENST00000663716.1:ENST00000663572.1:ENST00000676148.1:ENST00000667962.1:ENST00000674877.1:ENST00000675316.1:ENST00000674656.1:ENST00000446592.7:ENST00000667341.1:ENST00000675186.1:ENST00000652971.1:ENST00000661447.1:ENST00000674863.1:ENST00000675498.1:ENST00000675527.1:ENST00000676108.1:ENST00000657647.1:ENST00000675589.1:ENST00000675913.1:ENST00000675109.1:ENST00000671632.1:ENST00000671311.1:ENST00000676099.1:ENST00000660652.1:ENST00000675522.1:ENST00000675183.1:ENST00000658861.1:ENST00000663991.1:ENST00000675044.1:ENST00000675435.1:ENST00000674639.1:ENST00000676069.1:ENST00000675532.1:ENST00000674762.1:ENST00000523151.6:ENST00000675948.1:ENST00000665364.1:ENST00000657251.1:ENST00000675166.1:ENST00000674883.1:ENST00000675867.1:ENST00000674580.1:ENST00000675393.1:ENST00000520048.1:ENST00000674906.1:ENST00000676030.1:ENST00000670588.1:ENST00000675072.1:ENST00000664936.1:ENST00000652914.1	lncRNA	lncRNA	lncRNA	lncRNA	0	27	2	4.12807	4.2328600000000005	4.33765	0.039714	0.0338135	0.146709	0.143072
chr7	155773860	155773959	3453212	0	+	0.383838	(0.378,0.408]	chr7	322745	69	INTRON	INTRON	RBM33	ENSG00000184863.11	ENST00000401878.8:ENST00000341148.7:ENST00000392755.2	protein_coding	protein_coding	protein_coding	protein_coding	2	73	2	2.51464	4.23269	5.95074	0.00684341	8.87003e-5	0.0748032	0.00842626
chr12	10896728	10896828	5266746	0	-	0.38	(0.378,0.408]	chr12	502203	10	INTRON	INTRON	ENSG00000275778:PRH1	ENSG00000275778.2:ENSG00000231887.8	ENST00000536668.2:ENST00000535024.6:ENST00000539853.5:ENST00000541977.5:ENST00000536086.2:ENST00000546317.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	26	2	3.96471	4.232635	4.50056	0.032421	0.015974	0.145026	0.101453
chr12	55922407	55922506	5333183	0	-	0.383838	(0.378,0.408]	chr12	509228	77	INTRON	INTRON	PYM1	ENSG00000170473.17	ENST00000408946.7:ENST00000398213.4:ENST00000302533.6:ENST00000557259.5:ENST00000547925.1:ENST00000549939.1:ENST00000454792.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	26	2	3.96471	4.232635	4.50056	0.032421	0.015974	0.145026	0.101453
chr12	82357928	82358025	5377891	0	-	0.391753	(0.378,0.408]	chr12	512834	2	SS5_PROX	SS5_PROX:INTRON	CCDC59	ENSG00000133773.12	ENST00000552377.5:ENST00000256151.8:ENST00000548126.1:ENST00000547758.1:ENST00000552606.1:ENST00000552412.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	26	2	3.96471	4.232635	4.50056	0.032421	0.015974	0.145026	0.101453
chr19	911391	911490	7110920	0	-	0.393939	(0.378,0.408]	chr19	714174	84	INTRON	INTRON	R3HDM4	ENSG00000198858.10	ENST00000589428.5:ENST00000361574.10:ENST00000587975.2:ENST00000590454.2:ENST00000589445.1:ENST00000626716.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	26	2	3.96471	4.232635	4.50056	0.032421	0.015974	0.145026	0.101453
chr2	33030003	33030103	736291	0	+	0.38	(0.378,0.408]	chr2	84882	84	INTRON	INTRON	LTBP1	ENSG00000049323.16	ENST00000404816.7	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	3.96471	4.232635	4.50056	0.032421	0.015974	0.145026	0.101453
chr3	17442611	17442711	1627414	0	-	0.39	(0.378,0.408]	chr3	168186	137	INTRON	INTRON	TBC1D5	ENSG00000131374.15	ENST00000253692.11:ENST00000696125.1:ENST00000414318.2:ENST00000429383.8:ENST00000446818.6:ENST00000415814.6:ENST00000452492.6:ENST00000412981.5:ENST00000428355.5:ENST00000425944.5:ENST00000430169.5:ENST00000445294.5:ENST00000414349.5:ENST00000443499.6:ENST00000444756.5:ENST00000497531.5:ENST00000443386.5:ENST00000507877.5:ENST00000446863.5:ENST00000434420.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	26	2	3.96471	4.232635	4.50056	0.032421	0.015974	0.145026	0.101453
chr6	87558113	87558213	3152314	0	-	0.38	(0.378,0.408]	chr6	294051	22	INTRON	INTRON	RARS2	ENSG00000146282.19	ENST00000691533.1:ENST00000493269.2:ENST00000685069.1:ENST00000691725.1:ENST00000369536.10:ENST00000693431.1:ENST00000685408.1:ENST00000693327.1:ENST00000691205.1:ENST00000689174.1:ENST00000692684.1:ENST00000686988.1:ENST00000690622.1:ENST00000689206.1:ENST00000688532.1:ENST00000686154.1:ENST00000686407.1:ENST00000685701.1:ENST00000689561.1:ENST00000691238.1:ENST00000685336.1:ENST00000686284.1:ENST00000687586.1:ENST00000685376.1:ENST00000685881.1:ENST00000691815.1:ENST00000687090.1:ENST00000451155.2:ENST00000687437.1:ENST00000692394.1:ENST00000687729.1:ENST00000693605.1:ENST00000687909.1:ENST00000688391.1:ENST00000690884.1:ENST00000692843.1:ENST00000684790.1:ENST00000692270.1:ENST00000685219.1:ENST00000689952.1:ENST00000687579.1:ENST00000686857.1:ENST00000690205.1:ENST00000690705.1:ENST00000686142.1:ENST00000688106.1:ENST00000686196.1:ENST00000687078.1:ENST00000690555.1:ENST00000693524.1:ENST00000691259.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	26	2	3.96471	4.232635	4.50056	0.032421	0.015974	0.145026	0.101453
chr7	72661391	72661491	3552041	0	-	0.4	(0.378,0.408]	chr7	330530	320	INTRON	INTRON	TYW1B	ENSG00000277149.5	ENST00000612372.4:ENST00000620995.5	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	3.96471	4.232635	4.50056	0.032421	0.015974	0.145026	0.101453
chr7	111189214	111189314	3620374	0	-	0.4	(0.378,0.408]	chr7	337093	2253	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	26	2	3.96471	4.232635	4.50056	0.032421	0.015974	0.145026	0.101453
chr8	47810999	47811098	3944188	0	-	0.383838	(0.378,0.408]	chr8	361605	33	INTRON	INTRON	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	3.96471	4.232635	4.50056	0.032421	0.015974	0.145026	0.101453
chr1	114441125	114441225	527193	0	-	0.49	(0.476,0.515]	chr1	62137	70	INTRON	INTRON	TRIM33	ENSG00000197323.12	ENST00000358465.7:ENST00000369543.6:ENST00000448034.5	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	4.13586	4.232505	4.32915	0.031846	0.0124637	0.13151	0.0973643
chr1	167754079	167754178	248086	0	+	0.50505	(0.476,0.515]	chr1	29490	315	INTRON	INTRON	MPZL1	ENSG00000197965.12	ENST00000464954.1:ENST00000359523.7:ENST00000448405.5:ENST00000392121.7:ENST00000465787.5:ENST00000474859.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	25	2	4.13586	4.232505	4.32915	0.031846	0.0124637	0.13151	0.0973643
chr2	61388498	61388597	1129724	0	-	0.50505	(0.476,0.515]	chr2	121474	48	INTRON	INTRON	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000453133.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	25	2	4.13586	4.232505	4.32915	0.031846	0.0124637	0.13151	0.0973643
chr2	68187913	68188013	1145875	0	-	0.48	(0.476,0.515]	chr2	122383	2	INTRON	INTRON	PPP3R1	ENSG00000221823.11	ENST00000234310.8:ENST00000409752.5:ENST00000409377.1	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	4.13586	4.232505	4.32915	0.031846	0.0124637	0.13151	0.0973643
chr22	19813344	19813443	7555209	0	-	0.494949	(0.476,0.515]	chr22	772431	5	INTRON	INTRON	GNB1L	ENSG00000185838.14	ENST00000329517.11:ENST00000403325.5:ENST00000405009.5:ENST00000460402.5:ENST00000481086.1:ENST00000453108.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	25	2	4.13586	4.232505	4.32915	0.031846	0.0124637	0.13151	0.0973643
chr3	33683781	33683858	1653660	0	-	0.506494	(0.476,0.515]	chr3	169661	2	SS3_PROX	SS3_PROX:INTRON	CLASP2	ENSG00000163539.18	ENST00000399362.8:ENST00000682230.1:ENST00000468888.6:ENST00000359576.9:ENST00000462878.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	25	2	4.13586	4.232505	4.32915	0.031846	0.0124637	0.13151	0.0973643
chr7	157182919	157183011	3454387	0	+	0.51087	(0.476,0.515]	chr7	322940	2	INTRON	INTRON	UBE3C	ENSG00000009335.18	ENST00000611269.4:ENST00000348165.10:ENST00000389103.4	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	4.13586	4.232505	4.32915	0.031846	0.0124637	0.13151	0.0973643
chr8	144205049	144205148	3880900	0	+	0.515152	(0.476,0.515]	chr8	356701	40	INTRON	INTRON	MROH1	ENSG00000179832.18	ENST00000326134.10:ENST00000532255.5:ENST00000423230.6:ENST00000534366.5:ENST00000527552.5:ENST00000528919.5:ENST00000527071.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	25	2	4.13586	4.232505	4.32915	0.031846	0.0124637	0.13151	0.0973643
chr9	136033558	136033658	4372849	0	-	0.51	(0.476,0.515]	chr9	402584	142	INTRON	INTRON	NACC2	ENSG00000148411.8	ENST00000277554.4:ENST00000371753.5	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	4.13586	4.232505	4.32915	0.031846	0.0124637	0.13151	0.0973643
chr2	177239858	177239958	1275598	0	-	0.33	(0.32,0.35]	chr2	134708	52	INTRON	INTRON	NFE2L2	ENSG00000116044.16	ENST00000397063.8:ENST00000464747.5:ENST00000397062.8:ENST00000446151.6:ENST00000449627.1:ENST00000448782.5:ENST00000430047.1:ENST00000586532.5:ENST00000421929.5:ENST00000423513.5:ENST00000588123.1:ENST00000477534.1:ENST00000462023.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	57	2	3.13277	4.232475	5.33218	0.00458313	0.00204346	0.0622676	0.04086
chrX	74228298	74228398	7840954	0	-	0.33	(0.32,0.35]	chrX	799703	92	INTRON	INTRON	FTX	ENSG00000230590.12	ENST00000603672.5:ENST00000430772.6:ENST00000602776.6:ENST00000638681.1:ENST00000652319.1:ENST00000661133.1:ENST00000652071.1:ENST00000602812.6:ENST00000651703.1:ENST00000653018.1:ENST00000658448.1:ENST00000662240.1:ENST00000652527.1:ENST00000651451.1:ENST00000657611.1:ENST00000660481.1:ENST00000659574.1:ENST00000661084.1:ENST00000662494.1:ENST00000670936.1:ENST00000602420.6:ENST00000658203.1:ENST00000638985.1:ENST00000691187.1:ENST00000603037.2:ENST00000641360.1:ENST00000687056.1:ENST00000654870.2:ENST00000652540.1:ENST00000652331.2:ENST00000652013.1:ENST00000669263.1:ENST00000657070.1:ENST00000665069.1:ENST00000651936.1:ENST00000652496.1:ENST00000653874.2:ENST00000661335.1:ENST00000664123.1:ENST00000658439.1:ENST00000666535.1:ENST00000652970.1:ENST00000423992.3:ENST00000665313.2:ENST00000651140.1:ENST00000660100.1:ENST00000693483.1	lncRNA	lncRNA	lncRNA	lncRNA	1	57	2	3.13277	4.232475	5.33218	0.00458313	0.00204346	0.0622676	0.04086
chr1	26844607	26844707	52393	0	+	0.37	(0.35,0.378]	chr1	6697	116	INTRON	INTRON	ZDHHC18	ENSG00000204160.12	ENST00000374142.9:ENST00000374141.6:ENST00000534643.5	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.07186	4.232445	4.39303	0.0279478	0.0237246	0.137011	0.118716
chr1	113131563	113131663	188703	0	+	0.37	(0.35,0.378]	chr1	20954	76	UTR3	UTR3:EXON_MRNA	LRIG2	ENSG00000198799.12	ENST00000361127.6	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.07186	4.232445	4.39303	0.0279478	0.0237246	0.137011	0.118716
chr1	207775010	207775109	305139	0	+	0.353535	(0.35,0.378]	chr1	35121	43	INTRON	INTRON	CD46	ENSG00000117335.21	ENST00000695779.1:ENST00000695777.1:ENST00000695778.1:ENST00000496723.2:ENST00000695782.1:ENST00000695781.1:ENST00000695780.1:ENST00000636114.2:ENST00000367042.6:ENST00000322875.8:ENST00000322918.9:ENST00000354848.5:ENST00000357714.5:ENST00000358170.6:ENST00000367041.5:ENST00000367047.5:ENST00000695783.1:ENST00000695784.1:ENST00000469535.5:ENST00000360212.6:ENST00000480003.5:ENST00000695786.1:ENST00000490278.2:ENST00000488596.5:ENST00000471987.1:ENST00000462968.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	26	2	4.07186	4.232445	4.39303	0.0279478	0.0237246	0.137011	0.118716
chr10	22639129	22639229	4579743	0	-	0.36	(0.35,0.378]	chr10	422018	291	INTRON	INTRON	PIP4K2A	ENSG00000150867.14	ENST00000376573.9:ENST00000545335.5	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.07186	4.232445	4.39303	0.0279478	0.0237246	0.137011	0.118716
chr12	69555009	69555108	5165105	0	+	0.353535	(0.35,0.378]	chr12	489163	167	INTRON	INTRON	FRS2	ENSG00000166225.9	ENST00000547219.5:ENST00000550316.5:ENST00000547414.5:ENST00000548154.5:ENST00000549921.6:ENST00000550389.5:ENST00000550937.5:ENST00000549092.5:ENST00000550169.5	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.07186	4.232445	4.39303	0.0279478	0.0237246	0.137011	0.118716
chr15	48337969	48338067	6018874	0	+	0.377551	(0.35,0.378]	chr15	573629	15	INTRON	INTRON	DUT	ENSG00000128951.14	ENST00000559935.5:ENST00000559416.5:ENST00000558813.5:ENST00000331200.8:ENST00000558472.5:ENST00000558978.5:ENST00000455976.6:ENST00000559540.5:ENST00000558367.1:ENST00000561350.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	26	2	4.07186	4.232445	4.39303	0.0279478	0.0237246	0.137011	0.118716
chr17	45155272	45155371	6782257	0	-	0.373737	(0.35,0.378]	chr17	669028	40	INTRON	INTRON	HEXIM2-AS1	ENSG00000224505.3	ENST00000589950.1:ENST00000452741.2	lncRNA	lncRNA	lncRNA	lncRNA	0	26	2	4.07186	4.232445	4.39303	0.0279478	0.0237246	0.137011	0.118716
chr17	77440129	77440228	6681049	0	+	0.373737	(0.35,0.378]	chr17	652546	126	INTRON	INTRON	SEPTIN9	ENSG00000184640.20	ENST00000591198.5:ENST00000427177.6:ENST00000431235.6:ENST00000449803.6:ENST00000329047.13:ENST00000588575.1:ENST00000590294.6:ENST00000588690.6:ENST00000423034.6:ENST00000590059.5:ENST00000427674.6:ENST00000592420.1:ENST00000585930.5:ENST00000591020.5:ENST00000586521.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	26	2	4.07186	4.232445	4.39303	0.0279478	0.0237246	0.137011	0.118716
chr2	47169843	47169941	1114828	0	-	0.357143	(0.35,0.378]	chr2	119567	18	INTRON	INTRON	CALM2	ENSG00000143933.20	ENST00000272298.12:ENST00000652974.1:ENST00000460218.5:ENST00000655450.1:ENST00000432899.5:ENST00000456319.6:ENST00000656538.1:ENST00000668667.1:ENST00000655728.1:ENST00000409563.5:ENST00000484408.5:ENST00000489742.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	26	2	4.07186	4.232445	4.39303	0.0279478	0.0237246	0.137011	0.118716
chr2	58172809	58172906	1126051	0	-	0.371134	(0.35,0.378]	chr2	120898	37	EXON_MRNA	EXON_MRNA:INTRON	FANCL	ENSG00000115392.13	ENST00000696400.1:ENST00000403295.8:ENST00000696492.1:ENST00000427708.7:ENST00000696314.1:ENST00000696315.1:ENST00000696454.1:ENST00000696508.1:ENST00000696548.1:ENST00000696542.1:ENST00000696432.1:ENST00000696319.1:ENST00000403676.6:ENST00000696433.1:ENST00000696434.1:ENST00000696499.1:ENST00000696564.1:ENST00000402135.8:ENST00000696546.1:ENST00000233741.9:ENST00000696316.1:ENST00000696378.1:ENST00000696435.1:ENST00000696493.1:ENST00000696543.1:ENST00000696544.1:ENST00000696545.1:ENST00000696565.1:ENST00000696620.1:ENST00000696621.1:ENST00000696635.1:ENST00000696364.1:ENST00000696634.1:ENST00000696619.1:ENST00000696317.1:ENST00000696622.1:ENST00000696467.1:ENST00000696547.1:ENST00000449070.6:ENST00000696305.1:ENST00000417361.2:ENST00000696338.1:ENST00000696361.1:ENST00000696318.1:ENST00000696371.1:ENST00000696409.1:ENST00000696410.1:ENST00000696455.1:ENST00000696468.1:ENST00000696527.1:ENST00000696567.1:ENST00000696324.1:ENST00000696566.1:ENST00000696623.1:ENST00000446381.6:ENST00000696469.1:ENST00000696624.1:ENST00000696411.1:ENST00000696475.1:ENST00000470506.2:ENST00000696358.1:ENST00000696373.1:ENST00000696394.1:ENST00000696320.1:ENST00000696339.1:ENST00000696395.1:ENST00000696341.1:ENST00000696340.1:ENST00000696374.1:ENST00000696396.1:ENST00000696412.1:ENST00000696375.1:ENST00000696342.1:ENST00000696325.1:ENST00000696399.1:ENST00000696398.1:ENST00000696306.1:ENST00000696397.1:ENST00000696360.1:ENST00000696344.1:ENST00000696343.1:ENST00000696637.1:ENST00000696362.1:ENST00000696528.1:ENST00000696497.1:ENST00000696326.1:ENST00000696638.1:ENST00000696625.1:ENST00000696510.1:ENST00000696438.1:ENST00000696496.1:ENST00000696509.1:ENST00000696569.1:ENST00000696457.1:ENST00000696458.1:ENST00000696473.1:ENST00000696495.1:ENST00000696415.1:ENST00000696472.1:ENST00000696494.1:ENST00000696363.1:ENST00000696414.1:ENST00000696529.1:ENST00000696471.1:ENST00000696459.1:ENST00000696498.1:ENST00000696532.1:ENST00000696416.1:ENST00000696530.1:ENST00000696460.1:ENST00000696570.1:ENST00000696531.1:ENST00000696307.1:ENST00000696401.1:ENST00000696345.1:ENST00000696377.1:ENST00000696417.1:ENST00000696594.1:ENST00000696595.1:ENST00000696379.1:ENST00000696346.1:ENST00000696380.1:ENST00000696347.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	26	2	4.07186	4.232445	4.39303	0.0279478	0.0237246	0.137011	0.118716
chr2	112738228	112738327	1215370	0	-	0.353535	(0.35,0.378]	chr2	129314	20	UTR3	UTR3:EXON_MRNA	CKAP2L	ENSG00000169607.13	ENST00000302450.11:ENST00000435431.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	26	2	4.07186	4.232445	4.39303	0.0279478	0.0237246	0.137011	0.118716
chr2	171923573	171923669	918368	0	+	0.354167	(0.35,0.378]	chr2	101174	11	EXON_MRNA	EXON_MRNA:INTRON	HAT1	ENSG00000128708.13	ENST00000412731.5:ENST00000264108.5:ENST00000457761.6:ENST00000494601.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	26	2	4.07186	4.232445	4.39303	0.0279478	0.0237246	0.137011	0.118716
chr21	44940785	44940885	7417467	0	+	0.36	(0.35,0.378]	chr21	756215	2	INTRON	INTRON	SLX9	ENSG00000160256.13	ENST00000397826.7:ENST00000458015.1:ENST00000291634.11	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.07186	4.232445	4.39303	0.0279478	0.0237246	0.137011	0.118716
chr4	150930564	150930664	2270924	0	-	0.36	(0.35,0.378]	chr4	220921	11	INTRON	INTRON	LRBA	ENSG00000198589.14	ENST00000357115.9:ENST00000651943.2:ENST00000510413.5:ENST00000651035.1:ENST00000507224.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	26	2	4.07186	4.232445	4.39303	0.0279478	0.0237246	0.137011	0.118716
chr7	1820388	1820488	3462788	0	-	0.36	(0.35,0.378]	chr7	323969	30	INTRON	INTRON	MAD1L1	ENSG00000002822.16	ENST00000481633.1:ENST00000406869.5:ENST00000399654.6:ENST00000402746.5:ENST00000265854.12:ENST00000496548.1:ENST00000450235.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	26	2	4.07186	4.232445	4.39303	0.0279478	0.0237246	0.137011	0.118716
chr7	66928323	66928422	3326304	0	+	0.363636	(0.35,0.378]	chr7	309335	57	INTRON	INTRON	TMEM248	ENSG00000106609.16	ENST00000341567.8:ENST00000607045.5:ENST00000433271.6:ENST00000413593.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	26	2	4.07186	4.232445	4.39303	0.0279478	0.0237246	0.137011	0.118716
chrX	3826400	3826500	7746842	0	-	0.37	(0.35,0.378]	chrX	793077	4	SS5_PROX	SS5_PROX:INTRON	ENSG00000285756	ENSG00000285756.2	ENST00000648217.1:ENST00000425492.5:ENST00000662024.1:ENST00000490920.2:ENST00000475317.5:ENST00000483854.6:ENST00000653447.1:ENST00000669937.1:ENST00000671495.1:ENST00000486571.1	lncRNA	lncRNA	lncRNA	lncRNA	0	26	2	4.07186	4.232445	4.39303	0.0279478	0.0237246	0.137011	0.118716
chr2	171718435	171718535	918022	0	+	0.53	(0.515,0.57]	chr2	101116	26	INTRON	INTRON	DYNC1I2	ENSG00000077380.16	ENST00000340296.8:ENST00000452242.5:ENST00000397119.8:ENST00000410079.7:ENST00000438879.5:ENST00000508530.5:ENST00000409197.5:ENST00000456808.5:ENST00000409317.5:ENST00000409773.5:ENST00000409453.5:ENST00000445378.5:ENST00000435234.5:ENST00000425485.5:ENST00000423910.5:ENST00000422646.1:ENST00000482454.5:ENST00000470286.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	49	2	2.98677	4.23238	5.47799	0.00632549	2.09356e-4	0.0722266	0.0131276
chr9	137620468	137620568	4223486	0	+	0.54	(0.515,0.57]	chr9	388151	4	SS5_PROX	SS5_PROX:INTRON	EHMT1	ENSG00000181090.21	ENST00000462484.5:ENST00000371394.6:ENST00000630754.2:ENST00000460843.6:ENST00000626216.2:ENST00000637593.1:ENST00000629335.2:ENST00000637335.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	49	2	2.98677	4.23238	5.47799	0.00632549	2.09356e-4	0.0722266	0.0131276
chr1	2232969	2233069	2212	0	+	0.48	(0.476,0.515]	chr1	552	3	SS5_PROX	SS5_PROX:INTRON	SKI	ENSG00000157933.10	ENST00000378536.5:ENST00000508416.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	25	2	4.21964	4.2323249999999994	4.24501	0.0247713	0.0167715	0.12011	0.110511
chr1	51500605	51500705	454171	0	-	0.48	(0.476,0.515]	chr1	54447	189	INTRON	INTRON	EPS15	ENSG00000085832.17	ENST00000371733.8:ENST00000371730.6:ENST00000371727.5:ENST00000471391.1:ENST00000465467.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	25	2	4.21964	4.2323249999999994	4.24501	0.0247713	0.0167715	0.12011	0.110511
chr1	89845680	89845780	159772	0	+	0.48	(0.476,0.515]	chr1	17281	15	INTRON	INTRON	LRRC8D	ENSG00000171492.14	ENST00000525774.5:ENST00000337338.9:ENST00000394593.7:ENST00000532201.5:ENST00000414841.1:ENST00000527156.1	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	4.21964	4.2323249999999994	4.24501	0.0247713	0.0167715	0.12011	0.110511
chr10	32346023	32346123	4591636	0	-	0.48	(0.476,0.515]	chr10	423385	4	SS3_PROX	SS3_PROX:INTRON	EPC1	ENSG00000120616.16	ENST00000375110.6:ENST00000319778.11:ENST00000667706.1:ENST00000263062.8:ENST00000479380.2:ENST00000495790.1:ENST00000480402.1:ENST00000469059.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	25	2	4.21964	4.2323249999999994	4.24501	0.0247713	0.0167715	0.12011	0.110511
chr10	68439929	68440028	4639442	0	-	0.50505	(0.476,0.515]	chr10	426686	23	INTRON	INTRON	DNA2	ENSG00000138346.15	ENST00000358410.8:ENST00000551118.6:ENST00000399179.6:ENST00000399180.3:ENST00000478029.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	25	2	4.21964	4.2323249999999994	4.24501	0.0247713	0.0167715	0.12011	0.110511
chr11	16285315	16285415	4923122	0	-	0.48	(0.476,0.515]	chr11	461189	10	INTRON	INTRON	SOX6	ENSG00000110693.19	ENST00000396356.7:ENST00000655819.1:ENST00000683767.1:ENST00000316399.10:ENST00000528252.5:ENST00000528429.5:ENST00000527619.6:ENST00000533411.5:ENST00000530378.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	25	2	4.21964	4.2323249999999994	4.24501	0.0247713	0.0167715	0.12011	0.110511
chr12	121288486	121288585	5436617	0	-	0.484848	(0.476,0.515]	chr12	519827	43	INTRON	INTRON	CAMKK2	ENSG00000110931.19	ENST00000652382.1:ENST00000404169.8:ENST00000324774.9:ENST00000347034.6:ENST00000538733.5:ENST00000337174.7:ENST00000412367.6:ENST00000402834.8:ENST00000392473.2:ENST00000446440.6:ENST00000535524.1:ENST00000543477.1:ENST00000544485.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	25	2	4.21964	4.2323249999999994	4.24501	0.0247713	0.0167715	0.12011	0.110511
chr17	49675794	49675894	6793475	0	-	0.48	(0.476,0.515]	chr17	670317	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	SPOP	ENSG00000121067.19	ENST00000393328.6:ENST00000504102.6:ENST00000347630.6:ENST00000665825.1:ENST00000514121.6:ENST00000509079.6:ENST00000513080.6:ENST00000505581.5:ENST00000506399.5:ENST00000507970.5:ENST00000515508.6:ENST00000504212.5:ENST00000508805.5:ENST00000451526.6:ENST00000502385.1:ENST00000509765.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	25	2	4.21964	4.2323249999999994	4.24501	0.0247713	0.0167715	0.12011	0.110511
chr19	41885586	41885684	7071955	0	+	0.5	(0.476,0.515]	chr19	706922	7	INTRON	INTRON	ARHGEF1	ENSG00000076928.18	ENST00000600387.5:ENST00000600274.5:ENST00000354532.8:ENST00000599846.5:ENST00000596957.1:ENST00000347545.8:ENST00000378152.8:ENST00000337665.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	25	2	4.21964	4.2323249999999994	4.24501	0.0247713	0.0167715	0.12011	0.110511
chr2	161191943	161192043	900646	0	+	0.5	(0.476,0.515]	chr2	99619	118	INTRON	INTRON	TANK	ENSG00000136560.14	ENST00000259075.6:ENST00000432002.5:ENST00000440506.5:ENST00000429217.5:ENST00000406287.5:ENST00000402568.5:ENST00000457887.5:ENST00000392749.7:ENST00000432692.6:ENST00000441987.5:ENST00000405852.5:ENST00000456358.5:ENST00000468831.5:ENST00000403609.1:ENST00000489393.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	25	2	4.21964	4.2323249999999994	4.24501	0.0247713	0.0167715	0.12011	0.110511
chr20	35894980	35895079	7264131	0	+	0.484848	(0.476,0.515]	chr20	738144	73	INTRON	INTRON	PHF20	ENSG00000025293.17	ENST00000374012.8:ENST00000374000.8:ENST00000339089.10:ENST00000481202.5:ENST00000495338.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	25	2	4.21964	4.2323249999999994	4.24501	0.0247713	0.0167715	0.12011	0.110511
chr20	49086458	49086553	7284204	0	+	0.505263	(0.476,0.515]	chr20	740896	7	INTRON	INTRON	CSE1L	ENSG00000124207.17	ENST00000396192.7:ENST00000262982.3	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	4.21964	4.2323249999999994	4.24501	0.0247713	0.0167715	0.12011	0.110511
chr3	47637529	47637628	1683604	0	-	0.484848	(0.476,0.515]	chr3	171990	10	INTRON	INTRON	SMARCC1	ENSG00000173473.11	ENST00000254480.10:ENST00000425518.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	25	2	4.21964	4.2323249999999994	4.24501	0.0247713	0.0167715	0.12011	0.110511
chr3	49695065	49695163	1422607	0	+	0.479592	(0.476,0.515]	chr3	149787	32	INTRON	INTRON	RNF123	ENSG00000164068.16	ENST00000432042.5:ENST00000457726.5:ENST00000327697.11:ENST00000443204.3:ENST00000454491.5:ENST00000486102.5:ENST00000487805.6:ENST00000629802.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	25	2	4.21964	4.2323249999999994	4.24501	0.0247713	0.0167715	0.12011	0.110511
chr3	138804951	138805051	1831202	0	-	0.51	(0.476,0.515]	chr3	184062	80	INTRON	INTRON	PIK3CB	ENSG00000051382.9	ENST00000674063.1:ENST00000477593.5:ENST00000462898.5:ENST00000483968.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	25	2	4.21964	4.2323249999999994	4.24501	0.0247713	0.0167715	0.12011	0.110511
chr5	146211603	146211703	2514194	0	+	0.5	(0.476,0.515]	chr5	240152	74	INTRON	INTRON	ENSG00000275740:RBM27	ENSG00000275740.1:ENSG00000091009.8	ENST00000506502.2:ENST00000265271.7	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	4.21964	4.2323249999999994	4.24501	0.0247713	0.0167715	0.12011	0.110511
chr6	35372323	35372423	2852276	0	+	0.51	(0.476,0.515]	chr6	269491	248	INTRON	INTRON	PPARD	ENSG00000112033.14	ENST00000418635.6:ENST00000448077.6:ENST00000360694.8:ENST00000311565.4:ENST00000337400.6	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	4.21964	4.2323249999999994	4.24501	0.0247713	0.0167715	0.12011	0.110511
chr9	96403987	96404087	4295228	0	-	0.48	(0.476,0.515]	chr9	394970	53	INTRON	INTRON	ZNF367	ENSG00000165244.7	ENST00000375256.5	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	4.21964	4.2323249999999994	4.24501	0.0247713	0.0167715	0.12011	0.110511
chr20	35345392	35345490	7334528	0	-	0.44898	(0.44,0.476]	chr20	747141	14	UTR3	UTR3:EXON_MRNA:INTRON	UQCC1	ENSG00000101019.22	ENST00000374380.6:ENST00000374394.7:ENST00000374384.6:ENST00000359226.6:ENST00000349714.9:ENST00000457259.5:ENST00000374385.10:ENST00000453855.5:ENST00000397556.7:ENST00000424405.5:ENST00000497717.5:ENST00000443429.5:ENST00000438533.5:ENST00000397554.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	56	2	2.9195	4.23228	5.54506	0.0102021	1.21665e-4	0.0850389	0.00942499
chr4	159133499	159133599	2073804	0	+	0.52	(0.515,0.57]	chr4	205172	289	INTRON	INTRON	RAPGEF2	ENSG00000109756.10	ENST00000644474.1:ENST00000691494.1:ENST00000505478.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	52	2	2.76354	4.23222	5.7009	0.0147344	2.61423e-5	0.0983813	0.00402177
chr9	92055004	92055104	4285837	0	-	0.52	(0.515,0.57]	chr9	394001	2	SS5_PROX	SS5_PROX:INTRON	SPTLC1	ENSG00000090054.16	ENST00000643599.1:ENST00000642671.1:ENST00000646481.1:ENST00000689261.1:ENST00000690095.1:ENST00000646534.1:ENST00000262554.7:ENST00000687427.1:ENST00000690139.1:ENST00000687972.1:ENST00000689401.1:ENST00000686600.1:ENST00000686799.1:ENST00000644140.1:ENST00000692458.1:ENST00000687817.1:ENST00000693147.1:ENST00000482632.6:ENST00000689423.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	67	2	2.7208	4.23198	5.74316	0.00306828	2.06122e-5	0.0494933	0.00352433
chr1	193152705	193152786	284925	0	+	0.246914	[0,0.28]	chr1	32806	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CDC73	ENSG00000134371.14	ENST00000649895.1:ENST00000643006.1:ENST00000367435.5:ENST00000650197.1:ENST00000648071.1:ENST00000635846.1:ENST00000649606.1:ENST00000647662.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	28	2	4.07901	4.23144	4.38387	0.0501911	0.0494049	0.174117	0.156383
chr11	33706270	33706369	4941026	0	-	0.242424	[0,0.28]	chr11	462894	34	UTR3	UTR3:EXON_MRNA	CD59	ENSG00000085063.17	ENST00000642928.2:ENST00000651785.1:ENST00000652678.1	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.07901	4.23144	4.38387	0.0501911	0.0494049	0.174117	0.156383
chr12	91498215	91498315	5384198	0	-	0.18	[0,0.28]	chr12	513479	985	INTRON	INTRON	ENSG00000289605	ENSG00000289605.1	ENST00000685093.1	lncRNA	lncRNA	lncRNA	lncRNA	0	28	2	4.07901	4.23144	4.38387	0.0501911	0.0494049	0.174117	0.156383
chr16	29997360	29997453	6336473	0	+	0.215054	[0,0.28]	chr16	607085	1	INTRON	INTRON	INO80E	ENSG00000169592.15	ENST00000304516.11:ENST00000620599.4:ENST00000569957.5:ENST00000563197.6:ENST00000567254.5:ENST00000568043.5:ENST00000562441.5:ENST00000567065.5:ENST00000567705.5:ENST00000567987.5:ENST00000563040.5:ENST00000540562.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	28	2	4.07901	4.23144	4.38387	0.0501911	0.0494049	0.174117	0.156383
chr2	152672623	152672723	1246059	0	-	0.21	[0,0.28]	chr2	132301	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PRPF40A	ENSG00000196504.20	ENST00000410080.8:ENST00000545856.8:ENST00000696382.1:ENST00000696381.1:ENST00000354363.11	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	28	2	4.07901	4.23144	4.38387	0.0501911	0.0494049	0.174117	0.156383
chr2	208661088	208661188	996008	0	+	0.28	[0,0.28]	chr2	106920	37	INTRON	INTRON	PTH2R	ENSG00000144407.10	ENST00000419079.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	0	28	2	4.07901	4.23144	4.38387	0.0501911	0.0494049	0.174117	0.156383
chr3	101674780	101674880	1758857	0	-	0.28	[0,0.28]	chr3	178413	1	SS5_PROX	SS5_PROX:INTRON	ZBTB11	ENSG00000066422.6	ENST00000312938.5:ENST00000689142.1:ENST00000690624.1:ENST00000688910.1:ENST00000690651.1:ENST00000461821.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	28	2	4.07901	4.23144	4.38387	0.0501911	0.0494049	0.174117	0.156383
chr3	160523836	160523934	1850536	0	-	0.255102	[0,0.28]	chr3	186091	11	INTRON	INTRON	KPNA4	ENSG00000186432.10	ENST00000334256.9:ENST00000676866.1:ENST00000676799.1:ENST00000678630.1:ENST00000676958.1:ENST00000678765.1:ENST00000483437.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	28	2	4.07901	4.23144	4.38387	0.0501911	0.0494049	0.174117	0.156383
chr4	139390684	139390784	2050608	0	+	0.26	[0,0.28]	chr4	203405	27	UTR3	UTR3:EXON_MRNA:INTRON	NAA15	ENSG00000164134.13	ENST00000296543.10:ENST00000398947.1:ENST00000515576.1	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.07901	4.23144	4.38387	0.0501911	0.0494049	0.174117	0.156383
chr5	60667403	60667503	2627186	0	-	0.15	[0,0.28]	chr5	249590	194	INTRON	INTRON	DEPDC1B	ENSG00000035499.13	ENST00000265036.10:ENST00000453022.6:ENST00000512078.5:ENST00000512452.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	28	2	4.07901	4.23144	4.38387	0.0501911	0.0494049	0.174117	0.156383
chr6	109140320	109140420	2935846	0	+	0.18	[0,0.28]	chr6	276376	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	CEP57L1	ENSG00000183137.15	ENST00000521277.5:ENST00000521737.5:ENST00000407272.5:ENST00000519286.5:ENST00000518329.5:ENST00000522461.5:ENST00000518853.5:ENST00000521522.5:ENST00000524064.5:ENST00000522608.5:ENST00000517392.6:ENST00000519407.5:ENST00000521503.5:ENST00000519095.5:ENST00000520610.5:ENST00000368968.6:ENST00000522490.5:ENST00000523209.5:ENST00000368970.6:ENST00000520883.5:ENST00000520761.1:ENST00000523787.5:ENST00000359793.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	28	2	4.07901	4.23144	4.38387	0.0501911	0.0494049	0.174117	0.156383
chr6	131603397	131603490	3221409	0	-	0.27957	[0,0.28]	chr6	299392	2	SS3_PROX	SS3_PROX:INTRON	MED23	ENSG00000112282.18	ENST00000354577.8:ENST00000368068.8:ENST00000368060.7:ENST00000368058.5:ENST00000368053.8:ENST00000539158.1	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.07901	4.23144	4.38387	0.0501911	0.0494049	0.174117	0.156383
chr7	103973441	103973541	3599451	0	-	0.19	[0,0.28]	chr7	335929	559	INTRON	INTRON	RELN	ENSG00000189056.15	ENST00000343529.9:ENST00000428762.6:ENST00000681034.1:ENST00000424685.3:ENST00000679867.1:ENST00000473457.2:ENST00000680712.1:ENST00000681931.1:ENST00000681401.1:ENST00000679689.1:ENST00000681182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	28	2	4.07901	4.23144	4.38387	0.0501911	0.0494049	0.174117	0.156383
chr8	90349441	90349541	3793588	0	+	0.25	[0,0.28]	chr8	351786	1023	INTRON	INTRON	LINC00534	ENSG00000253394.7	ENST00000662145.1:ENST00000655523.1:ENST00000517400.6:ENST00000658299.1:ENST00000663329.1:ENST00000658342.1:ENST00000523283.6:ENST00000655219.1:ENST00000662692.1:ENST00000667296.1:ENST00000667565.1:ENST00000523406.2:ENST00000659030.1:ENST00000653734.1:ENST00000654785.1:ENST00000524361.5:ENST00000668745.1:ENST00000666641.2:ENST00000661519.1:ENST00000671657.1:ENST00000655123.1:ENST00000663098.1:ENST00000670903.1:ENST00000654946.1	lncRNA	lncRNA	lncRNA	lncRNA	0	28	2	4.07901	4.23144	4.38387	0.0501911	0.0494049	0.174117	0.156383
chr9	136727216	136727298	4375398	0	-	0.451219	(0.44,0.476]	chr9	403177	1	SS3_PROX	SS3_PROX:INTRON	SNHG7	ENSG00000233016.8	ENST00000414282.5:ENST00000685573.1:ENST00000686963.1:ENST00000653276.1:ENST00000416970.5:ENST00000668354.1:ENST00000447221.1	lncRNA	lncRNA	lncRNA	lncRNA	6	250	2	3.59031	4.2313	4.87229	1.14902e-6	2.99648e-7	6.7519e-4	2.73247e-4
chr7	99410367	99410465	3361743	0	+	0.367347	(0.35,0.378]	chr7	313926	2	SS5_PROX	SS5_PROX:INTRON	BUD31	ENSG00000106245.11	ENST00000403633.6:ENST00000427499.5:ENST00000222969.10:ENST00000496696.5:ENST00000473447.1:ENST00000471813.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	61	2	3.37175	4.231135	5.09052	0.00236696	0.00123501	0.043778	0.0326215
chr15	20469059	20469158	6118569	0	-	0.454545	(0.44,0.476]	chr15	582467	23	INTRON	INTRON	HERC2P3	ENSG00000180229.12	ENST00000428453.5:ENST00000437318.5:ENST00000430598.5:ENST00000429257.5:ENST00000414804.5:ENST00000412154.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	3	84	2	2.76603	4.2310550000000005	5.69608	6.78182e-4	2.01872e-4	0.0236375	0.0129814
chr16	89804110	89804210	6544693	0	-	0.36	(0.35,0.378]	chr16	634587	4	SS3_PROX	SS3_PROX:INTRON	FANCA	ENSG00000187741.16	ENST00000561667.2:ENST00000389301.8:ENST00000568369.6:ENST00000564475.6:ENST00000696275.1:ENST00000696287.1:ENST00000696286.1:ENST00000696274.1:ENST00000696291.1:ENST00000696276.1:ENST00000567205.2:ENST00000567284.7:ENST00000696277.1:ENST00000696292.1:ENST00000563767.2:ENST00000567621.6:ENST00000696288.1:ENST00000696293.1:ENST00000566889.5:ENST00000389302.7:ENST00000696294.1:ENST00000696295.1:ENST00000563673.5:ENST00000543736.5:ENST00000534992.5:ENST00000565582.5:ENST00000696296.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	113	2	2.00723	4.23096	6.45469	0.00607439	1.04528e-5	0.0703994	0.00253375
chr1	44880408	44880508	436720	0	-	0.45	(0.44,0.476]	chr1	52919	4	SS3_PROX	SS3_PROX:INTRON	EIF2B3	ENSG00000070785.17	ENST00000620860.4:ENST00000360403.7:ENST00000439363.5:ENST00000372183.7	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	4.12843	4.230945	4.33346	0.0337192	0.0120349	0.134145	0.0962115
chr10	49977954	49978051	4432996	0	+	0.463918	(0.44,0.476]	chr10	408716	14	INTRON	INTRON	TIMM23B-AGAP6	ENSG00000178440.8	ENST00000651763.1:ENST00000651208.1:ENST00000429104.1:ENST00000444438.2	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	0	25	2	4.12843	4.230945	4.33346	0.0337192	0.0120349	0.134145	0.0962115
chr12	76537698	76537777	5372163	0	-	0.455696	(0.44,0.476]	chr12	512504	3	SS5_PROX	SS5_PROX:INTRON	OSBPL8	ENSG00000091039.17	ENST00000261183.8:ENST00000393249.6:ENST00000611266.4:ENST00000393250.8:ENST00000547540.5:ENST00000553139.5:ENST00000549570.5:ENST00000550628.5:ENST00000549646.5:ENST00000551927.5:ENST00000547544.5:ENST00000552178.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	25	2	4.12843	4.230945	4.33346	0.0337192	0.0120349	0.134145	0.0962115
chr18	9716142	9716242	6871850	0	+	0.47	(0.44,0.476]	chr18	680774	73	INTRON	INTRON	RAB31	ENSG00000168461.13	ENST00000578734.5:ENST00000578921.6:ENST00000581109.1:ENST00000583137.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	25	2	4.12843	4.230945	4.33346	0.0337192	0.0120349	0.134145	0.0962115
chr19	57827013	57827112	7105796	0	+	0.444444	(0.44,0.476]	chr19	713201	61	INTRON	INTRON	ENSG00000268750:ZNF587B	ENSG00000268750.7:ENSG00000269343.9	ENST00000597134.5:ENST00000651253.2:ENST00000596498.2:ENST00000593873.6:ENST00000603271.1:ENST00000594328.1:ENST00000598031.1	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	4.12843	4.230945	4.33346	0.0337192	0.0120349	0.134145	0.0962115
chr2	86955431	86955529	824553	0	+	0.459184	(0.44,0.476]	chr2	92127	14	INTRON	INTRON	RGPD1	ENSG00000187627.17	ENST00000409776.6:ENST00000398193.8:ENST00000641458.2	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	4.12843	4.230945	4.33346	0.0337192	0.0120349	0.134145	0.0962115
chr2	237988778	237988873	1050765	0	+	0.463158	(0.44,0.476]	chr2	111732	4	INTRON	INTRON	UBE2F	ENSG00000184182.19	ENST00000440223.5:ENST00000441728.6:ENST00000414443.5:ENST00000272930.9:ENST00000409633.5:ENST00000416292.5:ENST00000448502.5:ENST00000433568.5:ENST00000455999.5:ENST00000417231.5:ENST00000445676.5:ENST00000439338.5:ENST00000439780.5:ENST00000454786.5:ENST00000433241.5:ENST00000409953.5:ENST00000409332.5:ENST00000612130.4:ENST00000434655.5:ENST00000434137.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	25	2	4.12843	4.230945	4.33346	0.0337192	0.0120349	0.134145	0.0962115
chr22	20780692	20780792	7558883	0	-	0.47	(0.44,0.476]	chr22	773112	146	INTRON	INTRON	PI4KA	ENSG00000241973.11	ENST00000255882.11:ENST00000466162.5:ENST00000484220.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	25	2	4.12843	4.230945	4.33346	0.0337192	0.0120349	0.134145	0.0962115
chr3	48984826	48984923	1422147	0	+	0.474227	(0.44,0.476]	chr3	149582	17	UTR3	UTR3:EXON_MRNA	ARIH2	ENSG00000177479.20	ENST00000356401.9	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	4.12843	4.230945	4.33346	0.0337192	0.0120349	0.134145	0.0962115
chr3	128631089	128631179	1813808	0	-	0.444444	(0.44,0.476]	chr3	182300	6	INTRON	INTRON	RPN1	ENSG00000163902.12	ENST00000296255.8:ENST00000497289.5	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	4.12843	4.230945	4.33346	0.0337192	0.0120349	0.134145	0.0962115
chr6	31650027	31650127	3079002	0	-	0.45	(0.44,0.476]	chr6	286869	4	SS3_PROX	SS3_PROX:INTRON	BAG6	ENSG00000204463.14	ENST00000211379.9:ENST00000679119.1:ENST00000375964.11:ENST00000676571.1:ENST00000676615.2:ENST00000375976.8:ENST00000362049.10:ENST00000439687.6:ENST00000437771.5:ENST00000435080.5:ENST00000456622.5:ENST00000452994.5:ENST00000434444.5:ENST00000428326.5:ENST00000451898.5:ENST00000433828.5:ENST00000424480.5:ENST00000424176.5:ENST00000441054.5:ENST00000456286.5:ENST00000454165.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	25	2	4.12843	4.230945	4.33346	0.0337192	0.0120349	0.134145	0.0962115
chr10	45983030	45983130	4430489	0	+	0.26	[0,0.28]	chr10	408477	1	SS5_PROX	SS5_PROX:INTRON	TIMM23	ENSG00000265354.4	ENST00000580018.4	protein_coding	protein_coding	protein_coding	protein_coding	2	87	2	2.6632	4.230919999999999	5.79864	0.00515076	0.00125481	0.0650394	0.0323608
chr15	57979620	57979720	6186665	0	-	0.43	(0.408,0.44]	chr15	589736	134	INTRON	INTRON	ALDH1A2	ENSG00000128918.15	ENST00000537372.5:ENST00000249750.9:ENST00000347587.7:ENST00000430119.6:ENST00000558231.5:ENST00000559517.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	54	2	2.89193	4.23083	5.56973	0.00950364	3.81714e-4	0.0863579	0.0181283
chr3	152378584	152378684	1536087	0	+	0.28	[0,0.28]	chr3	160003	430	INTRON	INTRON	MBNL1	ENSG00000152601.18	ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000495875.6:ENST00000324210.10:ENST00000493459.5:ENST00000459747.1:ENST00000460591.5:ENST00000545754.5:ENST00000357472.7:ENST00000324196.9:ENST00000498502.5:ENST00000463374.5:ENST00000485910.5:ENST00000465907.6:ENST00000492948.5:ENST00000485509.5:ENST00000464596.5	protein_coding	protein_coding	protein_coding	protein_coding	1	65	2	2.90797	4.230765	5.55356	0.0118539	0.00278704	0.0962115	0.0469265
chr1	12007595	12007695	26740	0	+	0.47	(0.44,0.476]	chr1	3167	3	SS5_PROX	SS5_PROX:INTRON	MFN2	ENSG00000116688.18	ENST00000444836.5:ENST00000674817.1:ENST00000675053.1:ENST00000675298.1:ENST00000675817.1:ENST00000674548.1:ENST00000675959.1:ENST00000675872.1:ENST00000676426.1:ENST00000674658.1:ENST00000674910.1:ENST00000675231.1:ENST00000235329.10:ENST00000676293.1:ENST00000675919.1:ENST00000675987.1:ENST00000675512.1:ENST00000675113.1:ENST00000675483.1:ENST00000675528.1:ENST00000675404.1:ENST00000676295.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	25	2	4.22393	4.23074	4.23755	0.0263357	0.0162322	0.122221	0.109464
chr1	161044941	161045024	573643	0	-	0.46988	(0.44,0.476]	chr1	69566	1	INTRON	INTRON	USF1	ENSG00000158773.14	ENST00000368021.7:ENST00000473969.6:ENST00000496363.5:ENST00000491629.5:ENST00000534633.5:ENST00000529476.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	25	2	4.22393	4.23074	4.23755	0.0263357	0.0162322	0.122221	0.109464
chr10	124621759	124621858	4710870	0	-	0.464646	(0.44,0.476]	chr10	434752	26	UTR3	UTR3:EXON_MRNA	FAM53B	ENSG00000189319.14	ENST00000337318.8:ENST00000392754.7	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	4.22393	4.23074	4.23755	0.0263357	0.0162322	0.122221	0.109464
chr11	57506467	57506567	4953713	0	-	0.45	(0.44,0.476]	chr11	465056	47	INTRON	INTRON	SLC43A1	ENSG00000149150.9	ENST00000278426.8:ENST00000528450.5:ENST00000530159.5:ENST00000533066.5:ENST00000524995.5:ENST00000534105.5:ENST00000533263.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	25	2	4.22393	4.23074	4.23755	0.0263357	0.0162322	0.122221	0.109464
chr15	84673727	84673826	6251595	0	-	0.474747	(0.44,0.476]	chr15	596647	31	EXON_MRNA	EXON_MRNA:INTRON	SEC11A	ENSG00000140612.14	ENST00000559729.5:ENST00000268220.12:ENST00000560266.5:ENST00000558134.5:ENST00000558217.5:ENST00000558924.1:ENST00000455959.7:ENST00000560409.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	25	2	4.22393	4.23074	4.23755	0.0263357	0.0162322	0.122221	0.109464
chr16	23562371	23562447	6323105	0	+	0.447368	(0.44,0.476]	chr16	605551	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	UBFD1	ENSG00000103353.16	ENST00000567212.5:ENST00000395878.8:ENST00000571064.5:ENST00000563366.5:ENST00000565634.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	25	2	4.22393	4.23074	4.23755	0.0263357	0.0162322	0.122221	0.109464
chr17	30504280	30504380	6589335	0	+	0.46	(0.44,0.476]	chr17	640817	83	INTRON	INTRON	GOSR1	ENSG00000108587.16	ENST00000225724.9:ENST00000451249.7:ENST00000427274.6:ENST00000467337.6:ENST00000581721.5:ENST00000414833.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	25	2	4.22393	4.23074	4.23755	0.0263357	0.0162322	0.122221	0.109464
chr17	67085038	67085137	6824186	0	-	0.464646	(0.44,0.476]	chr17	674362	61	INTRON	INTRON	HELZ	ENSG00000198265.12	ENST00000358691.10:ENST00000579953.5:ENST00000580168.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	25	2	4.22393	4.23074	4.23755	0.0263357	0.0162322	0.122221	0.109464
chr2	135469955	135470055	1232888	0	-	0.45	(0.44,0.476]	chr2	131237	788	INTRON	INTRON	ZRANB3	ENSG00000121988.18	ENST00000264159.11:ENST00000401392.5:ENST00000536680.5:ENST00000403017.2:ENST00000452187.6:ENST00000492193.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	25	2	4.22393	4.23074	4.23755	0.0263357	0.0162322	0.122221	0.109464
chr22	23795776	23795875	7484708	0	+	0.474747	(0.44,0.476]	chr22	763696	17	INTRON	INTRON	SMARCB1	ENSG00000099956.20	ENST00000407422.8:ENST00000344921.11:ENST00000644036.2:ENST00000646421.1:ENST00000491967.2:ENST00000647057.1:ENST00000644619.1:ENST00000263121.12:ENST00000407082.4:ENST00000417137.6:ENST00000646723.1:ENST00000643421.1:ENST00000646911.1:ENST00000644462.1:ENST00000634926.1:ENST00000635578.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	25	2	4.22393	4.23074	4.23755	0.0263357	0.0162322	0.122221	0.109464
chr3	155883232	155883331	1537253	0	+	0.444444	(0.44,0.476]	chr3	160082	120	INTRON	INTRON	GMPS	ENSG00000163655.16	ENST00000496455.7:ENST00000295920.7	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	4.22393	4.23074	4.23755	0.0263357	0.0162322	0.122221	0.109464
chr7	32989548	32989647	3304782	0	+	0.444444	(0.44,0.476]	chr7	306910	5	INTRON	INTRON	FKBP9	ENSG00000122642.11	ENST00000538336.5:ENST00000242209.9:ENST00000472007.5:ENST00000489038.5:ENST00000490776.3:ENST00000418354.5:ENST00000463443.1:ENST00000468510.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	25	2	4.22393	4.23074	4.23755	0.0263357	0.0162322	0.122221	0.109464
chr7	102460101	102460201	3588402	0	-	0.45	(0.44,0.476]	chr7	334958	3	SS3_PROX	SS3_PROX:INTRON	ALKBH4	ENSG00000160993.4	ENST00000292566.4:ENST00000490528.1:ENST00000498283.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	25	2	4.22393	4.23074	4.23755	0.0263357	0.0162322	0.122221	0.109464
chr7	157348851	157348951	3455419	0	+	0.47	(0.44,0.476]	chr7	323052	84	INTRON	INTRON	DNAJB6	ENSG00000105993.15	ENST00000441561.5:ENST00000429029.6:ENST00000262177.9:ENST00000486083.6:ENST00000417758.5:ENST00000459889.5:ENST00000443280.5:ENST00000488001.5:ENST00000441291.5:ENST00000437030.5:ENST00000412557.5:ENST00000453383.5:ENST00000439402.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	25	2	4.22393	4.23074	4.23755	0.0263357	0.0162322	0.122221	0.109464
chr8	132778810	132778910	3865203	0	+	0.46	(0.44,0.476]	chr8	355809	5	INTRON	INTRON	PHF20L1	ENSG00000129292.21	ENST00000622263.4:ENST00000220847.8:ENST00000395383.5:ENST00000361997.9:ENST00000395379.5:ENST00000395386.7:ENST00000485595.5:ENST00000315808.14:ENST00000337920.8:ENST00000395376.5:ENST00000522580.5:ENST00000395390.6:ENST00000486199.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	25	2	4.22393	4.23074	4.23755	0.0263357	0.0162322	0.122221	0.109464
chr9	65718093	65718192	4132249	0	+	0.464646	(0.44,0.476]	chr9	376527	88	INTRON	INTRON	CBWD5	ENSG00000147996.17	ENST00000377392.9:ENST00000377389.5:ENST00000476161.5:ENST00000497250.5:ENST00000480229.5:ENST00000430059.6:ENST00000382405.8:ENST00000429800.6:ENST00000486221.5:ENST00000465474.5:ENST00000377395.8:ENST00000476797.5:ENST00000489273.1:ENST00000485088.5:ENST00000468066.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	25	2	4.22393	4.23074	4.23755	0.0263357	0.0162322	0.122221	0.109464
chrX	139204595	139204683	7903615	0	-	0.465909	(0.44,0.476]	chrX	804263	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	FGF13	ENSG00000129682.16	ENST00000626909.2:ENST00000436198.5:ENST00000448673.1	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	4.22393	4.23074	4.23755	0.0263357	0.0162322	0.122221	0.109464
chr9	120788278	120788378	4335415	0	-	0.32	(0.28,0.32]	chr9	398261	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	FBXW2	ENSG00000119402.18	ENST00000684405.1:ENST00000684001.1:ENST00000684047.1:ENST00000608872.6:ENST00000453291.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	81	2	2.94244	4.23056	5.51868	0.00162747	0.00144407	0.0367966	0.0348397
chr17	5600966	5601066	6716020	0	-	0.39	(0.378,0.408]	chr17	658490	161	INTRON	INTRON	NLRP1	ENSG00000091592.16	ENST00000576905.5:ENST00000572143.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	54	2	3.5186	4.23055	4.9425	0.00452675	8.45009e-4	0.0595107	0.0263813
chr1	61135327	61135427	127925	0	+	0.33	(0.32,0.35]	chr1	14778	24	INTRON	INTRON	NFIA	ENSG00000162599.17	ENST00000371191.5:ENST00000664495.1:ENST00000476646.5:ENST00000407417.7:ENST00000479364.1:ENST00000371189.8:ENST00000670151.1:ENST00000664149.1:ENST00000662015.1:ENST00000403491.8:ENST00000371187.7:ENST00000485903.6:ENST00000371185.6:ENST00000371184.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	77	2	2.58753	4.230405	5.87328	0.00560122	2.6344e-4	0.0678837	0.0149561
chr7	121113757	121113857	3394896	0	+	0.28	[0,0.28]	chr7	317723	133	INTRON	INTRON	CPED1	ENSG00000106034.18	ENST00000310396.10:ENST00000428526.5:ENST00000450913.6:ENST00000423795.5:ENST00000443817.1	protein_coding	protein_coding	protein_coding	protein_coding	6	148	2	2.17485	4.230354999999999	6.28586	0.00275723	2.0925e-4	0.0486216	0.0131276
chr3	154288265	154288365	1843158	0	-	0.31	(0.28,0.32]	chr3	185382	29	INTRON	INTRON	DHX36	ENSG00000174953.14	ENST00000496811.6:ENST00000308361.10:ENST00000329463.9:ENST00000481941.5:ENST00000469977.1:ENST00000481332.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	81	2	2.55521	4.230315	5.90542	0.0067419	3.92169e-4	0.0739405	0.0184748
chr7	87903018	87903115	3346953	0	+	0.309278	(0.28,0.32]	chr7	311892	18	INTRON	INTRON	DBF4	ENSG00000006634.8	ENST00000413643.5:ENST00000265728.6:ENST00000431138.5:ENST00000430279.5:ENST00000498144.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	81	2	2.55521	4.230315	5.90542	0.0067419	3.92169e-4	0.0739405	0.0184748
chr19	1439678	1439752	6995410	0	+	0.621622	(0.57,1]	chr19	693238	2	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	RPS15	ENSG00000115268.10	ENST00000233609.8:ENST00000586686.6:ENST00000592588.7:ENST00000591032.1:ENST00000592623.5:ENST00000589656.6:ENST00000586656.5:ENST00000591804.6:ENST00000593052.5:ENST00000592700.2:ENST00000586096.3:ENST00000585665.2:ENST00000617694.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	67	2	2.98769	4.23023	5.47277	3.79135e-5	1.12467e-5	0.00525207	0.0024806
chr1	227296305	227296405	651499	0	-	0.26	[0,0.28]	chr1	77110	312	INTRON	INTRON	CDC42BPA	ENSG00000143776.20	ENST00000366766.8:ENST00000366769.7:ENST00000334218.9:ENST00000366767.7:ENST00000366764.8:ENST00000478573.6:ENST00000682551.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	87	2	2.72768	4.23022	5.73276	0.00405445	0.00156565	0.0578376	0.0360583
chr4	1892891	1892991	1910787	0	+	0.24	[0,0.28]	chr4	191719	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	NSD2	ENSG00000109685.19	ENST00000508803.6:ENST00000507820.5:ENST00000508355.5:ENST00000514045.5:ENST00000515806.1:ENST00000398261.6:ENST00000382891.9:ENST00000353275.9:ENST00000382892.6:ENST00000382895.7:ENST00000312087.10:ENST00000420906.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	87	2	2.62985	4.23017	5.83049	0.00581422	0.00112548	0.068681	0.0306963
chr6	85546883	85546983	3150446	0	-	0.47	(0.44,0.476]	chr6	293757	4	SS5_PROX	SS5_PROX:INTRON	ENSG00000271793:SNX14	ENSG00000271793.2:ENSG00000135317.14	ENST00000682083.1:ENST00000683074.1:ENST00000681965.1:ENST00000682171.1:ENST00000684150.1:ENST00000683785.1:ENST00000682497.1:ENST00000684647.1:ENST00000683643.1:ENST00000682023.1:ENST00000682022.1:ENST00000683542.1:ENST00000683126.1:ENST00000683857.1:ENST00000683898.1:ENST00000682854.1:ENST00000682491.1:ENST00000682174.1:ENST00000684239.1:ENST00000682939.1:ENST00000684570.1:ENST00000682057.1:ENST00000682878.1:ENST00000683880.1:ENST00000684422.1:ENST00000682504.1:ENST00000683726.1:ENST00000684680.1:ENST00000683196.1:ENST00000683458.1:ENST00000683803.1:ENST00000684281.1:ENST00000682991.1:ENST00000683754.1:ENST00000683481.1:ENST00000682455.1:ENST00000682034.1:ENST00000684451.1:ENST00000683583.1:ENST00000682776.1:ENST00000683873.1:ENST00000683878.1:ENST00000683195.1:ENST00000682995.1:ENST00000682374.1:ENST00000683698.1:ENST00000682454.1:ENST00000682694.1:ENST00000682412.1:ENST00000682682.1:ENST00000346348.7:ENST00000314673.8:ENST00000682633.1:ENST00000683085.1:ENST00000682688.1:ENST00000684319.1:ENST00000683577.1:ENST00000682709.1:ENST00000684299.1:ENST00000682133.1:ENST00000682594.1:ENST00000683473.1:ENST00000682106.1:ENST00000683364.1:ENST00000683436.1:ENST00000684220.1:ENST00000683909.1:ENST00000684118.1:ENST00000681981.1:ENST00000682738.1:ENST00000509338.6:ENST00000684717.1:ENST00000682660.1:ENST00000683073.1:ENST00000515216.6:ENST00000684581.1:ENST00000683479.1:ENST00000682464.1:ENST00000684108.1:ENST00000682514.1:ENST00000684017.1:ENST00000684273.1:ENST00000513865.5:ENST00000505648.5:ENST00000508980.5:ENST00000369627.6:ENST00000503491.5:ENST00000508658.6:ENST00000683097.1:ENST00000683541.1:ENST00000683759.1:ENST00000369635.7:ENST00000684462.1:ENST00000682168.1:ENST00000513869.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	104	2	2.38698	4.230025	6.07307	0.00229045	7.17687e-6	0.0427959	0.00189988
chr12	50508638	50508738	5137186	0	+	0.3	(0.28,0.32]	chr12	484468	30	INTRON	INTRON	DIP2B	ENSG00000066084.13	ENST00000301180.10:ENST00000549620.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	123	2	2.17579	4.22996	6.28413	0.00757046	1.12598e-5	0.0749063	0.0024806
chr2	191930841	191930941	961848	0	+	0.4	(0.378,0.408]	chr2	104337	74	INTRON	INTRON	CAVIN2-AS1	ENSG00000233766.8	ENST00000424116.7:ENST00000428980.6	lncRNA	lncRNA	lncRNA	lncRNA	1	57	2	2.71183	4.22985	5.74787	0.0170789	2.21531e-4	0.110899	0.0136064
chr12	74268310	74268409	5368132	0	-	0.434343	(0.408,0.44]	chr12	512126	174	INTRON	INTRON	LINC02882:ENSG00000257183	ENSG00000251138.7:ENSG00000257183.1	ENST00000663261.1:ENST00000665907.1:ENST00000669556.1:ENST00000653134.1:ENST00000549905.5:ENST00000662107.1:ENST00000658833.1:ENST00000515416.7:ENST00000551726.2:ENST00000670573.1:ENST00000656876.1:ENST00000668228.1:ENST00000668997.1:ENST00000665895.1:ENST00000670471.1:ENST00000658677.1:ENST00000668665.1:ENST00000552046.1	lncRNA	lncRNA	lncRNA	lncRNA	1	56	2	3.05705	4.229565	5.40208	0.00658331	2.37882e-4	0.0701901	0.0136195
chr16	84774759	84774859	6410673	0	+	0.34	(0.32,0.35]	chr16	615347	2	SS3_PROX	SS3_PROX:INTRON	USP10	ENSG00000103194.16	ENST00000540269.6:ENST00000219473.12:ENST00000570191.5:ENST00000563048.5:ENST00000569925.1:ENST00000567526.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	57	2	3.3273	4.229265	5.13123	0.00394704	0.00218894	0.0548259	0.0435144
chr2	233452958	233453058	1040844	0	+	0.63	(0.57,1]	chr2	111095	5	INTRON	INTRON	DGKD	ENSG00000077044.11	ENST00000264057.7:ENST00000409813.7:ENST00000490764.5:ENST00000430834.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	36	2	3.49517	4.229265	4.96336	6.03609e-4	2.05554e-4	0.0226059	0.0124557
chr15	40663754	40663852	6003163	0	+	0.204082	[0,0.28]	chr15	570989	17	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	KNL1	ENSG00000137812.21	ENST00000346991.9:ENST00000399668.7:ENST00000526913.5:ENST00000531626.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	88	2	2.45042	4.229245	6.00807	0.010819	6.0063e-4	0.0920575	0.0226059
chr2	208753364	208753464	996931	0	+	0.34	(0.32,0.35]	chr2	106920	960	INTRON	INTRON	PTH2R	ENSG00000144407.10	ENST00000419079.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	1	57	2	3.07975	4.22904	5.37833	0.00554235	0.00174321	0.0674105	0.0375363
chr21	29049512	29049591	7390225	0	+	0.341772	(0.32,0.35]	chr21	753033	3	INTRON	INTRON	USP16	ENSG00000156256.15	ENST00000399975.7:ENST00000334352.8:ENST00000474835.5:ENST00000399976.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	57	2	3.07975	4.22904	5.37833	0.00554235	0.00174321	0.0674105	0.0375363
chr5	6611494	6611585	2566554	0	-	0.340659	(0.32,0.35]	chr5	245919	4	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NSUN2	ENSG00000037474.15	ENST00000264670.11:ENST00000504374.5:ENST00000505892.5:ENST00000506139.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	57	2	3.07975	4.22904	5.37833	0.00554235	0.00174321	0.0674105	0.0375363
chr17	75230002	75230095	6674523	0	+	0.354839	(0.35,0.378]	chr17	651408	5	INTRON	INTRON	NUP85	ENSG00000125450.11	ENST00000245544.9:ENST00000579324.5:ENST00000581104.5:ENST00000579298.5:ENST00000578830.5:ENST00000579557.5:ENST00000577645.5:ENST00000583070.5:ENST00000580879.5:ENST00000540768.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	89	2	2.80389	4.22903	5.65417	6.14024e-4	4.33402e-4	0.0223951	0.0190829
chr2	231962364	231962464	1033026	0	+	0.44	(0.408,0.44]	chr2	110375	2	INTRON	INTRON	DIS3L2	ENSG00000144535.20	ENST00000273009.10:ENST00000390005.9:ENST00000409401.7:ENST00000445090.5:ENST00000441279.5:ENST00000325385.12	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	116	2	4.18519	4.228995	4.2728	3.11754e-5	2.59215e-5	0.0046673	0.00400663
chr16	81562977	81563077	6406181	0	+	0.58	(0.57,1]	chr16	615031	671	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	3.40333	4.22891	5.05449	9.20604e-4	1.79828e-4	0.0278392	0.0121697
chr16	14593105	14593202	6449468	0	-	0.412371	(0.408,0.44]	chr16	621300	12	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	PARN	ENSG00000140694.17	ENST00000651865.1:ENST00000437198.7:ENST00000651348.1:ENST00000650990.1:ENST00000651760.1:ENST00000652541.1:ENST00000652727.1:ENST00000652066.1:ENST00000651300.1:ENST00000420015.6:ENST00000652051.1:ENST00000341484.11:ENST00000539279.5:ENST00000651049.1:ENST00000650960.1:ENST00000651634.1:ENST00000564113.6:ENST00000652411.1:ENST00000652501.1:ENST00000651027.1:ENST00000651913.1:ENST00000563641.6:ENST00000569444.5:ENST00000651241.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	56	2	3.00595	4.22874	5.45153	0.00781452	1.89064e-4	0.0759016	0.0119565
chr13	28189603	28189703	5461343	0	+	0.36	(0.35,0.378]	chr13	523255	113	INTRON	INTRON	PAN3	ENSG00000152520.14	ENST00000503791.5:ENST00000380958.8:ENST00000399613.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	74	2	2.59046	4.22872	5.86698	0.00528327	1.76496e-4	0.0656295	0.01216
chr20	47287584	47287684	7348813	0	-	0.41	(0.408,0.44]	chr20	749311	3	SS3_PROX	SS3_PROX:INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000467200.6:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000468376.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	84	2	2.76768	4.22847	5.68926	6.71664e-4	2.2853e-4	0.0235155	0.0138641
chr1	52403745	52403845	457067	0	-	0.52	(0.515,0.57]	chr1	54919	1	SS5_PROX	SS5_PROX:INTRON	ORC1	ENSG00000085840.13	ENST00000371568.8:ENST00000371566.1	protein_coding	protein_coding	protein_coding	protein_coding	2	64	2	3.12673	4.22815	5.32957	4.06834e-4	3.95089e-4	0.0185763	0.0178567
chr17	46183823	46183923	6784779	0	-	0.52	(0.515,0.57]	chr17	669245	112	INTRON	INTRON	KANSL1	ENSG00000120071.15	ENST00000574590.6:ENST00000572904.6:ENST00000432791.7:ENST00000575318.6:ENST00000638275.1:ENST00000262419.10:ENST00000648792.1:ENST00000639150.1:ENST00000571698.2:ENST00000639375.1:ENST00000638269.1:ENST00000639356.1:ENST00000574655.6:ENST00000639099.1:ENST00000638902.1:ENST00000576739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	64	2	3.12673	4.22815	5.32957	4.06834e-4	3.95089e-4	0.0185763	0.0178567
chr16	58611196	58611296	6496196	0	-	0.54	(0.515,0.57]	chr16	628638	113	INTRON	INTRON	CNOT1	ENSG00000125107.19	ENST00000317147.10:ENST00000569240.5:ENST00000567188.5:ENST00000441024.6:ENST00000565605.5:ENST00000564557.1:ENST00000569916.1:ENST00000565697.1:ENST00000569020.5:ENST00000568158.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	48	2	3.12663	4.2281	5.32957	0.00374498	4.06834e-4	0.0562234	0.0185763
chr17	75227753	75227850	6674497	0	+	0.443299	(0.44,0.476]	chr17	651401	9	INTRON	INTRON	NUP85	ENSG00000125450.11	ENST00000245544.9:ENST00000579324.5:ENST00000581104.5:ENST00000579298.5:ENST00000578830.5:ENST00000579557.5:ENST00000577645.5:ENST00000583070.5:ENST00000580879.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	75	2	2.78046	4.228025	5.67559	0.0028389	6.34721e-5	0.0473151	0.00658818
chr1	10052161	10052261	19318	0	+	0.44	(0.408,0.44]	chr1	1838	181	INTRON	INTRON	UBE4B	ENSG00000130939.20	ENST00000672724.1:ENST00000253251.12:ENST00000343090.11:ENST00000377153.5	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	4.12187	4.2279350000000004	4.334	0.0354689	0.011982	0.137535	0.0962115
chr1	32082701	32082801	63244	0	+	0.43	(0.408,0.44]	chr1	8035	50	INTRON	INTRON	TMEM39B	ENSG00000121775.18	ENST00000487305.5:ENST00000438825.5:ENST00000336294.10:ENST00000441402.5:ENST00000472503.5:ENST00000468135.5:ENST00000466321.5:ENST00000476968.5:ENST00000498613.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	25	2	4.12187	4.2279350000000004	4.334	0.0354689	0.011982	0.137535	0.0962115
chr1	43749909	43750009	86510	0	+	0.41	(0.408,0.44]	chr1	11652	107	INTRON	INTRON	ST3GAL3	ENSG00000126091.21	ENST00000646096.1:ENST00000532911.6:ENST00000643597.1:ENST00000643886.1:ENST00000372372.7:ENST00000545417.5:ENST00000330208.6:ENST00000335430.10:ENST00000361400.9:ENST00000347631.8:ENST00000642331.1:ENST00000647237.1:ENST00000643252.1:ENST00000372374.7:ENST00000361392.9:ENST00000646109.1:ENST00000533997.6:ENST00000353126.8:ENST00000645640.1:ENST00000642934.1:ENST00000643283.1:ENST00000351035.8:ENST00000642949.1:ENST00000489897.6:ENST00000646971.1:ENST00000645142.1:ENST00000645705.1:ENST00000530154.5:ENST00000646027.1:ENST00000646069.1:ENST00000642504.1:ENST00000647148.1:ENST00000262915.8:ENST00000479383.6:ENST00000647482.1:ENST00000645394.1:ENST00000647128.1:ENST00000484868.2:ENST00000461066.6:ENST00000361746.9:ENST00000645034.1:ENST00000645165.1:ENST00000647134.1:ENST00000644195.1:ENST00000642194.1:ENST00000372368.7:ENST00000646686.1:ENST00000372366.6:ENST00000361812.9:ENST00000469715.6:ENST00000372369.5:ENST00000372367.5:ENST00000372365.5:ENST00000528371.5:ENST00000533212.5:ENST00000530581.5:ENST00000531816.1:ENST00000531993.6:ENST00000490541.6:ENST00000372362.6:ENST00000531451.5:ENST00000646416.1:ENST00000645117.1:ENST00000533933.6:ENST00000332628.11:ENST00000643813.1:ENST00000644922.1:ENST00000644287.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	25	2	4.12187	4.2279350000000004	4.334	0.0354689	0.011982	0.137535	0.0962115
chr1	196664021	196664120	286106	0	+	0.414141	(0.408,0.44]	chr1	32887	49	INTRON	INTRON	CFH:ENSG00000289697	ENSG00000000971.17:ENSG00000289697.1	ENST00000359637.3:ENST00000695968.1:ENST00000696032.1:ENST00000695970.1:ENST00000695971.1:ENST00000695972.1:ENST00000470918.2:ENST00000695969.1:ENST00000695973.1:ENST00000695974.1:ENST00000696033.1:ENST00000695975.1:ENST00000695976.1:ENST00000695981.1:ENST00000695980.1:ENST00000695978.1:ENST00000695979.1:ENST00000696026.1:ENST00000696027.1:ENST00000696028.1:ENST00000696029.1:ENST00000695983.1:ENST00000696025.1:ENST00000696024.1:ENST00000696023.1:ENST00000696019.1:ENST00000696020.1:ENST00000696021.1:ENST00000696022.1:ENST00000696018.1:ENST00000695984.1:ENST00000367429.9:ENST00000696030.1:ENST00000630130.2:ENST00000696031.1:ENST00000496761.2:ENST00000695986.1:ENST00000695987.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	25	2	4.12187	4.2279350000000004	4.334	0.0354689	0.011982	0.137535	0.0962115
chr10	17661743	17661842	4399442	0	+	0.424242	(0.408,0.44]	chr10	406156	8	INTRON	INTRON	STAM	ENSG00000136738.15	ENST00000377524.8:ENST00000377500.1:ENST00000445846.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	25	2	4.12187	4.2279350000000004	4.334	0.0354689	0.011982	0.137535	0.0962115
chr10	94497672	94497769	4499117	0	+	0.42268	(0.408,0.44]	chr10	414154	1	INTRON	INTRON	TBC1D12	ENSG00000108239.9	ENST00000225235.5	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	4.12187	4.2279350000000004	4.334	0.0354689	0.011982	0.137535	0.0962115
chr11	27420454	27420554	4936899	0	-	0.42	(0.408,0.44]	chr11	462402	72	INTRON	INTRON	LGR4	ENSG00000205213.14	ENST00000379214.9:ENST00000389858.4:ENST00000480977.2	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	4.12187	4.2279350000000004	4.334	0.0354689	0.011982	0.137535	0.0962115
chr11	35685536	35685636	4770295	0	+	0.41	(0.408,0.44]	chr11	441372	2	SS5_PROX	SS5_PROX:INTRON	TRIM44	ENSG00000166326.7	ENST00000299413.7	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	4.12187	4.2279350000000004	4.334	0.0354689	0.011982	0.137535	0.0962115
chr14	60904933	60905033	5738432	0	+	0.43	(0.408,0.44]	chr14	544921	247	INTRON	INTRON	MNAT1	ENSG00000020426.11	ENST00000261245.9:ENST00000539616.6:ENST00000554002.5:ENST00000557134.1	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	4.12187	4.2279350000000004	4.334	0.0354689	0.011982	0.137535	0.0962115
chr15	34436434	34436526	6133255	0	-	0.413043	(0.408,0.44]	chr15	584292	6	INTRON	INTRON	GOLGA8A	ENSG00000175265.18	ENST00000359187.5:ENST00000569781.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	25	2	4.12187	4.2279350000000004	4.334	0.0354689	0.011982	0.137535	0.0962115
chr15	80987279	80987379	6241601	0	-	0.44	(0.408,0.44]	chr15	595833	47	INTRON	INTRON	MESD	ENSG00000117899.11	ENST00000619987.4:ENST00000561312.5:ENST00000422879.3:ENST00000559537.1:ENST00000261758.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	25	2	4.12187	4.2279350000000004	4.334	0.0354689	0.011982	0.137535	0.0962115
chr15	95076679	95076779	6107408	0	+	0.44	(0.408,0.44]	chr15	581726	73	INTRON	INTRON	ENSG00000277654	ENSG00000277654.6	ENST00000621842.4:ENST00000615751.4:ENST00000616940.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	0	25	2	4.12187	4.2279350000000004	4.334	0.0354689	0.011982	0.137535	0.0962115
chr16	28387060	28387159	6468548	0	-	0.434343	(0.408,0.44]	chr16	624628	32	INTRON	INTRON	EIF3CL	ENSG00000205609.13	ENST00000398944.7:ENST00000380876.5	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	4.12187	4.2279350000000004	4.334	0.0354689	0.011982	0.137535	0.0962115
chr17	2678825	2678923	6548316	0	+	0.428571	(0.408,0.44]	chr17	635298	8	INTRON	INTRON	PAFAH1B1	ENSG00000007168.14	ENST00000397195.10:ENST00000675621.1:ENST00000676353.1:ENST00000674717.1:ENST00000675202.1:ENST00000675764.1:ENST00000674608.1:ENST00000676077.1:ENST00000676098.1:ENST00000572915.6:ENST00000675331.1:ENST00000676188.1:ENST00000574816.5:ENST00000675390.1:ENST00000397193.7:ENST00000574468.1:ENST00000571495.2:ENST00000675574.1:ENST00000675385.1:ENST00000675084.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	25	2	4.12187	4.2279350000000004	4.334	0.0354689	0.011982	0.137535	0.0962115
chr17	4319398	4319497	6711889	0	-	0.434343	(0.408,0.44]	chr17	657718	119	INTRON	INTRON	UBE2G1	ENSG00000132388.13	ENST00000396981.7:ENST00000572484.5:ENST00000574633.5:ENST00000571980.1:ENST00000571953.5:ENST00000574059.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	25	2	4.12187	4.2279350000000004	4.334	0.0354689	0.011982	0.137535	0.0962115
chr17	62579150	62579246	6653905	0	+	0.416667	(0.408,0.44]	chr17	649408	7	EXON_MRNA	EXON_MRNA:INTRON	TLK2	ENSG00000146872.19	ENST00000582809.5:ENST00000682085.1:ENST00000346027.10:ENST00000326270.13:ENST00000682203.1:ENST00000343388.11:ENST00000683536.1:ENST00000684440.1:ENST00000684772.1:ENST00000682274.1:ENST00000682827.1:ENST00000682075.1:ENST00000683104.1:ENST00000684012.1:ENST00000581041.5:ENST00000684553.1:ENST00000683737.1:ENST00000684133.1:ENST00000584367.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	25	2	4.12187	4.2279350000000004	4.334	0.0354689	0.011982	0.137535	0.0962115
chr17	80604899	80604999	6685386	0	+	0.42	(0.408,0.44]	chr17	653403	112	INTRON	INTRON	RPTOR	ENSG00000141564.15	ENST00000574767.5:ENST00000577161.5:ENST00000306801.8:ENST00000649732.1:ENST00000570891.5:ENST00000544334.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	25	2	4.12187	4.2279350000000004	4.334	0.0354689	0.011982	0.137535	0.0962115
chr19	10180249	10180334	7134725	0	-	0.435294	(0.408,0.44]	chr19	719237	1	SSB_ADJ	SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DNMT1	ENSG00000130816.17	ENST00000340748.8:ENST00000359526.9:ENST00000592705.5:ENST00000679103.1:ENST00000677634.1:ENST00000676820.1:ENST00000677250.1:ENST00000677013.1:ENST00000677685.1:ENST00000677616.1:ENST00000676610.1:ENST00000678804.1:ENST00000679313.1:ENST00000677946.1:ENST00000586988.5:ENST00000588952.5:ENST00000588118.5:ENST00000592342.5:ENST00000592054.5:ENST00000590619.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	25	2	4.12187	4.2279350000000004	4.334	0.0354689	0.011982	0.137535	0.0962115
chr20	58317821	58317921	7289036	0	+	0.42	(0.408,0.44]	chr20	741629	63	INTRON	INTRON	RAB22A	ENSG00000124209.4	ENST00000244040.4:ENST00000488949.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	25	2	4.12187	4.2279350000000004	4.334	0.0354689	0.011982	0.137535	0.0962115
chr21	46390269	46390369	7421899	0	+	0.41	(0.408,0.44]	chr21	756809	2	SS3_PROX	SS3_PROX:INTRON	PCNT	ENSG00000160299.18	ENST00000695558.1:ENST00000359568.10:ENST00000480896.5	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	4.12187	4.2279350000000004	4.334	0.0354689	0.011982	0.137535	0.0962115
chr22	19914416	19914515	7556043	0	-	0.434343	(0.408,0.44]	chr22	772527	26	INTRON	INTRON	TXNRD2	ENSG00000184470.21	ENST00000400518.5:ENST00000542719.6:ENST00000494454.5:ENST00000474308.5:ENST00000400525.6:ENST00000400521.7:ENST00000400519.6:ENST00000635155.1:ENST00000491939.6:ENST00000334363.14:ENST00000475995.3:ENST00000484672.5:ENST00000471835.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	25	2	4.12187	4.2279350000000004	4.334	0.0354689	0.011982	0.137535	0.0962115
chr3	44505254	44505354	1676842	0	-	0.42	(0.408,0.44]	chr3	171167	18	INTRON	INTRON	ZNF852	ENSG00000178917.17	ENST00000436261.6:ENST00000489411.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	25	2	4.12187	4.2279350000000004	4.334	0.0354689	0.011982	0.137535	0.0962115
chr8	47781661	47781761	3943877	0	-	0.41	(0.408,0.44]	chr8	361538	1	SS5_PROX	SS5_PROX:INTRON	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7:ENST00000521331.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	25	2	4.12187	4.2279350000000004	4.334	0.0354689	0.011982	0.137535	0.0962115
chr9	7032991	7033091	4102931	0	+	0.43	(0.408,0.44]	chr9	373762	167	INTRON	INTRON	KDM4C	ENSG00000107077.19	ENST00000536108.5:ENST00000381306.7:ENST00000381309.8:ENST00000543771.5:ENST00000428870.6:ENST00000420847.2	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	4.12187	4.2279350000000004	4.334	0.0354689	0.011982	0.137535	0.0962115
chr9	124729407	124729507	4348796	0	-	0.43	(0.408,0.44]	chr9	399255	1337	INTRON	INTRON	NR6A1	ENSG00000148200.17	ENST00000487099.7:ENST00000373584.7:ENST00000416460.6:ENST00000344523.8	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	4.12187	4.2279350000000004	4.334	0.0354689	0.011982	0.137535	0.0962115
chr9	132073742	132073842	4366134	0	-	0.41	(0.408,0.44]	chr9	401344	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	MED27	ENSG00000160563.14	ENST00000651950.1:ENST00000357028.6:ENST00000292035.10:ENST00000651555.1:ENST00000650776.1:ENST00000444872.3:ENST00000474263.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	25	2	4.12187	4.2279350000000004	4.334	0.0354689	0.011982	0.137535	0.0962115
chrX	124891595	124891695	7884273	0	-	0.43	(0.408,0.44]	chrX	802781	1540	INTRON	INTRON	TENM1	ENSG00000009694.13	ENST00000371130.7:ENST00000422452.2	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	4.12187	4.2279350000000004	4.334	0.0354689	0.011982	0.137535	0.0962115
chr1	66977122	66977222	139976	0	+	0.54	(0.515,0.57]	chr1	15711	4	SS5_PROX	SS5_PROX:INTRON	MIER1	ENSG00000198160.15	ENST00000355977.10:ENST00000371018.7:ENST00000357692.6:ENST00000371016.5:ENST00000371014.5:ENST00000401041.6:ENST00000355356.3:ENST00000401042.7	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	4.04086	4.22792	4.41498	0.0197045	0.0106866	0.120063	0.0861859
chr10	86918771	86918871	4481032	0	+	0.53	(0.515,0.57]	chr10	412348	2	SS3_PROX	SS3_PROX:INTRON	BMPR1A	ENSG00000107779.14	ENST00000638429.1:ENST00000372037.8:ENST00000635816.1:ENST00000636056.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	24	2	4.04086	4.22792	4.41498	0.0197045	0.0106866	0.120063	0.0861859
chr12	32335263	32335359	5109249	0	+	0.552083	(0.515,0.57]	chr12	482401	2	INTRON	INTRON	BICD1	ENSG00000151746.15	ENST00000652176.1:ENST00000548411.5:ENST00000395758.3:ENST00000552160.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	24	2	4.04086	4.22792	4.41498	0.0197045	0.0106866	0.120063	0.0861859
chr13	98556595	98556695	5643588	0	-	0.54	(0.515,0.57]	chr13	537505	347	INTRON	INTRON	STK24	ENSG00000102572.15	ENST00000539966.6:ENST00000397517.6:ENST00000491878.5:ENST00000481288.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	24	2	4.04086	4.22792	4.41498	0.0197045	0.0106866	0.120063	0.0861859
chr17	82833910	82834010	6695034	0	+	0.52	(0.515,0.57]	chr17	654907	28	INTRON	INTRON	TBCD	ENSG00000141556.22	ENST00000682479.1:ENST00000682722.1:ENST00000684464.1:ENST00000684544.1:ENST00000681983.1:ENST00000684361.1:ENST00000683184.1:ENST00000683282.1:ENST00000684408.1:ENST00000355528.9:ENST00000683444.1:ENST00000684776.1:ENST00000683041.1:ENST00000684760.1:ENST00000684349.1:ENST00000682213.1:ENST00000683009.1:ENST00000682921.1:ENST00000539345.6:ENST00000684000.1:ENST00000684188.1:ENST00000684429.1:ENST00000682610.1:ENST00000683821.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	24	2	4.04086	4.22792	4.41498	0.0197045	0.0106866	0.120063	0.0861859
chr18	49069957	49070057	6969067	0	-	0.57	(0.515,0.57]	chr18	689739	254	INTRON	INTRON	DYM	ENSG00000141627.14	ENST00000675505.1:ENST00000269445.10:ENST00000442713.6:ENST00000577734.1	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	4.04086	4.22792	4.41498	0.0197045	0.0106866	0.120063	0.0861859
chr18	54207946	54208046	6974803	0	-	0.53	(0.515,0.57]	chr18	690237	24	INTRON	INTRON	MBD2	ENSG00000134046.12	ENST00000256429.8:ENST00000398398.6:ENST00000583046.1	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	4.04086	4.22792	4.41498	0.0197045	0.0106866	0.120063	0.0861859
chr2	37062350	37062450	1095577	0	-	0.54	(0.515,0.57]	chr2	117383	3	SS3_PROX	SS3_PROX:INTRON	HEATR5B	ENSG00000008869.12	ENST00000233099.6	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	4.04086	4.22792	4.41498	0.0197045	0.0106866	0.120063	0.0861859
chr2	235627513	235627613	1042672	0	+	0.56	(0.515,0.57]	chr2	111222	1026	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1:ENST00000402604.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	24	2	4.04086	4.22792	4.41498	0.0197045	0.0106866	0.120063	0.0861859
chr3	49710285	49710384	1422794	0	+	0.535354	(0.515,0.57]	chr3	149879	30	INTRON	INTRON	RNF123	ENSG00000164068.16	ENST00000432042.5:ENST00000457726.5:ENST00000327697.11:ENST00000486102.5:ENST00000487805.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	24	2	4.04086	4.22792	4.41498	0.0197045	0.0106866	0.120063	0.0861859
chr7	138561789	138561889	3435668	0	+	0.52	(0.515,0.57]	chr7	320015	50	INTRON	INTRON	TRIM24	ENSG00000122779.18	ENST00000343526.9:ENST00000415680.6:ENST00000497516.5:ENST00000493595.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	24	2	4.04086	4.22792	4.41498	0.0197045	0.0106866	0.120063	0.0861859
chrX	3866421	3866521	7747253	0	-	0.53	(0.515,0.57]	chrX	793125	1	SS5_PROX	SS5_PROX:INTRON	ENSG00000285756	ENSG00000285756.2	ENST00000648217.1:ENST00000650456.1:ENST00000657698.1:ENST00000661656.1:ENST00000661924.1:ENST00000669719.1:ENST00000655273.1:ENST00000456563.1:ENST00000650538.1:ENST00000438107.1	lncRNA	lncRNA	lncRNA	lncRNA	0	24	2	4.04086	4.22792	4.41498	0.0197045	0.0106866	0.120063	0.0861859
chr9	128834822	128834910	4359298	0	-	0.477273	(0.476,0.515]	chr9	400702	1	SS5_PROX	SS5_PROX:INTRON	KYAT1	ENSG00000171097.14	ENST00000462722.5:ENST00000302586.8:ENST00000320665.10:ENST00000483599.5:ENST00000436267.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	56	2	2.82673	4.22783	5.62893	0.0134403	8.45697e-5	0.0946278	0.00776967
chr1	28634088	28634188	409918	0	-	0.41	(0.408,0.44]	chr1	49356	97	INTRON	INTRON	TAF12	ENSG00000120656.14	ENST00000685589.1:ENST00000693642.1:ENST00000688108.1:ENST00000692098.1:ENST00000691563.1:ENST00000471683.6:ENST00000495422.2:ENST00000373824.9:ENST00000685312.1:ENST00000690860.1:ENST00000691050.1:ENST00000689843.1:ENST00000263974.4:ENST00000693729.1:ENST00000690492.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	25	2	4.22447	4.227715	4.23096	0.0278028	0.0161655	0.123904	0.109464
chr1	39109513	39109613	74931	0	+	0.44	(0.408,0.44]	chr1	9693	34	INTRON	INTRON	MACF1	ENSG00000127603.32	ENST00000361689.7:ENST00000689911.1:ENST00000567887.5:ENST00000372915.8:ENST00000472385.2:ENST00000693209.1:ENST00000524432.5:ENST00000467673.5:ENST00000688212.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	25	2	4.22447	4.227715	4.23096	0.0278028	0.0161655	0.123904	0.109464
chr1	196658337	196658436	286049	0	+	0.434343	(0.408,0.44]	chr1	32883	58	INTRON	INTRON	CFH:ENSG00000289697	ENSG00000000971.17:ENSG00000289697.1	ENST00000359637.3:ENST00000695968.1:ENST00000696032.1:ENST00000695970.1:ENST00000695971.1:ENST00000695972.1:ENST00000470918.2:ENST00000695969.1:ENST00000695973.1:ENST00000695974.1:ENST00000696033.1:ENST00000695975.1:ENST00000695976.1:ENST00000695981.1:ENST00000695980.1:ENST00000695978.1:ENST00000695979.1:ENST00000696026.1:ENST00000696027.1:ENST00000696028.1:ENST00000696029.1:ENST00000695983.1:ENST00000696025.1:ENST00000696024.1:ENST00000696023.1:ENST00000696019.1:ENST00000696020.1:ENST00000696021.1:ENST00000696022.1:ENST00000696018.1:ENST00000695984.1:ENST00000367429.9:ENST00000696030.1:ENST00000630130.2:ENST00000696031.1:ENST00000496761.2:ENST00000695986.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	25	2	4.22447	4.227715	4.23096	0.0278028	0.0161655	0.123904	0.109464
chr10	68675830	68675929	4442047	0	+	0.434343	(0.408,0.44]	chr10	409558	24	INTRON	INTRON	TET1	ENSG00000138336.9	ENST00000373644.5	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	4.22447	4.227715	4.23096	0.0278028	0.0161655	0.123904	0.109464
chr10	74881774	74881874	4461953	0	+	0.42	(0.408,0.44]	chr10	411665	346	INTRON	INTRON	KAT6B	ENSG00000156650.14	ENST00000648725.1:ENST00000648159.1:ENST00000649006.1:ENST00000649463.1:ENST00000372725.6:ENST00000650232.1:ENST00000648370.1:ENST00000648899.1:ENST00000648483.1:ENST00000648892.1:ENST00000372724.6:ENST00000649657.1:ENST00000372714.6:ENST00000649442.1:ENST00000287239.10:ENST00000648048.1:ENST00000647666.1:ENST00000649375.1:ENST00000650330.1:ENST00000650380.1:ENST00000647637.1:ENST00000372711.2:ENST00000648369.1:ENST00000650048.1:ENST00000647642.1:ENST00000650517.1:ENST00000647554.1:ENST00000648302.1:ENST00000649645.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	25	2	4.22447	4.227715	4.23096	0.0278028	0.0161655	0.123904	0.109464
chr11	70361594	70361694	4821355	0	+	0.41	(0.408,0.44]	chr11	449527	1	SS3_PROX	SS3_PROX:INTRON	PPFIA1	ENSG00000131626.19	ENST00000253925.12:ENST00000389547.7:ENST00000532504.5:ENST00000648755.1:ENST00000644155.1:ENST00000526262.5:ENST00000528750.1:ENST00000530390.5:ENST00000527612.1:ENST00000638133.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	25	2	4.22447	4.227715	4.23096	0.0278028	0.0161655	0.123904	0.109464
chr12	132881832	132881931	5450789	0	-	0.434343	(0.408,0.44]	chr12	522236	38	INTRON	INTRON	CHFR	ENSG00000072609.18	ENST00000450056.7:ENST00000266880.11:ENST00000443047.6:ENST00000315585.11:ENST00000432561.6:ENST00000541817.5:ENST00000540963.1:ENST00000540537.5:ENST00000542714.5:ENST00000536932.5:ENST00000537551.5:ENST00000535181.5:ENST00000536196.1:ENST00000499045.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	25	2	4.22447	4.227715	4.23096	0.0278028	0.0161655	0.123904	0.109464
chr14	90629601	90629701	5949855	0	-	0.43	(0.408,0.44]	chr14	564943	112	INTRON	INTRON	TTC7B	ENSG00000165914.15	ENST00000328459.11:ENST00000555005.5:ENST00000554654.5:ENST00000553972.5:ENST00000555239.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	25	2	4.22447	4.227715	4.23096	0.0278028	0.0161655	0.123904	0.109464
chr17	49024018	49024118	6624872	0	+	0.41	(0.408,0.44]	chr17	646601	96	INTRON	INTRON	IGF2BP1	ENSG00000159217.10	ENST00000290341.8:ENST00000431824.2:ENST00000515586.5:ENST00000499130.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	25	2	4.22447	4.227715	4.23096	0.0278028	0.0161655	0.123904	0.109464
chr19	19495253	19495353	7036253	0	+	0.43	(0.408,0.44]	chr19	701488	1	SS3_PROX	SS3_PROX:INTRON	GATAD2A	ENSG00000167491.18	ENST00000360315.7:ENST00000609040.5:ENST00000683918.1:ENST00000404158.5:ENST00000358713.7:ENST00000418032.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	25	2	4.22447	4.227715	4.23096	0.0278028	0.0161655	0.123904	0.109464
chr3	47724130	47724230	1684494	0	-	0.41	(0.408,0.44]	chr3	172088	30	INTRON	INTRON	SMARCC1	ENSG00000173473.11	ENST00000254480.10:ENST00000425518.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	25	2	4.22447	4.227715	4.23096	0.0278028	0.0161655	0.123904	0.109464
chr4	15670700	15670800	2115023	0	-	0.41	(0.408,0.44]	chr4	208898	104	INTRON	INTRON	FBXL5	ENSG00000118564.15	ENST00000510802.5:ENST00000507899.1:ENST00000515679.1:ENST00000514541.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	25	2	4.22447	4.227715	4.23096	0.0278028	0.0161655	0.123904	0.109464
chr5	72228960	72229059	2639878	0	-	0.424242	(0.408,0.44]	chr5	250919	7	EXON_MRNA	EXON_MRNA:INTRON	MRPS27	ENSG00000113048.18	ENST00000694990.1:ENST00000694989.1:ENST00000522042.2:ENST00000694988.1:ENST00000261413.10:ENST00000513900.6:ENST00000695403.1:ENST00000523654.6:ENST00000694998.1:ENST00000694997.1:ENST00000695298.1:ENST00000694996.1:ENST00000694995.1:ENST00000519143.6:ENST00000694994.1:ENST00000695297.1:ENST00000695296.1:ENST00000694993.1:ENST00000694992.1:ENST00000694991.1:ENST00000694999.1:ENST00000457646.9:ENST00000515226.5:ENST00000695404.1:ENST00000508863.6:ENST00000522562.5:ENST00000515404.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	25	2	4.22447	4.227715	4.23096	0.0278028	0.0161655	0.123904	0.109464
chr5	141542005	141542105	2739387	0	-	0.41	(0.408,0.44]	chr5	258065	72	INTRON	INTRON	DIAPH1	ENSG00000131504.18	ENST00000647433.1:ENST00000389054.8:ENST00000518047.5:ENST00000491754.5:ENST00000518484.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	25	2	4.22447	4.227715	4.23096	0.0278028	0.0161655	0.123904	0.109464
chr9	77248178	77248273	4145646	0	+	0.431579	(0.408,0.44]	chr9	377844	4	INTRON	INTRON	VPS13A	ENSG00000197969.14	ENST00000376636.7:ENST00000360280.8:ENST00000643348.1:ENST00000645632.1	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	4.22447	4.227715	4.23096	0.0278028	0.0161655	0.123904	0.109464
chr9	105602523	105602619	4182002	0	+	0.416667	(0.408,0.44]	chr9	381401	8	INTRON	INTRON	FKTN	ENSG00000106692.15	ENST00000675443.1:ENST00000223528.6:ENST00000675695.1:ENST00000357998.10:ENST00000675668.1:ENST00000448551.6:ENST00000675736.1:ENST00000674563.1:ENST00000602661.6:ENST00000675232.1:ENST00000676192.1:ENST00000602526.1:ENST00000674633.1:ENST00000642537.1:ENST00000645933.1:ENST00000642177.1:ENST00000642644.1:ENST00000676371.1:ENST00000676310.1:ENST00000374705.5:ENST00000642952.1:ENST00000676011.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	25	2	4.22447	4.227715	4.23096	0.0278028	0.0161655	0.123904	0.109464
chr19	5607217	5607316	7124194	0	-	0.40404	(0.378,0.408]	chr19	717006	19	INTRON	INTRON	SAFB2	ENSG00000130254.12	ENST00000252542.9:ENST00000591123.5:ENST00000592599.5:ENST00000591101.5:ENST00000591310.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	53	2	3.27907	4.22767	5.17627	0.0023379	0.00208234	0.0442989	0.0411801
chr15	68125658	68125758	6056670	0	+	0.4	(0.378,0.408]	chr15	576567	374	INTRON	INTRON	PIAS1	ENSG00000033800.14	ENST00000564915.5:ENST00000249636.11:ENST00000562190.1:ENST00000545237.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	53	2	3.22599	4.227615	5.22924	0.00288652	0.00172721	0.0494641	0.0374701
chr15	69424781	69424881	6058846	0	+	0.38	(0.378,0.408]	chr15	576743	1	SS3_PROX	SS3_PROX:INTRON	KIF23	ENSG00000137807.16	ENST00000260363.9:ENST00000643966.1:ENST00000395392.6:ENST00000352331.8:ENST00000561089.5:ENST00000647715.1:ENST00000679126.1:ENST00000558346.5:ENST00000559279.6:ENST00000558585.5:ENST00000559283.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	87	2	2.90102	4.22745	5.55388	5.01023e-4	3.47934e-4	0.0206993	0.0166215
chr1	162499062	162499160	238005	0	+	0.336735	(0.32,0.35]	chr1	28652	4	INTRON	INTRON	UHMK1	ENSG00000152332.16	ENST00000545294.5:ENST00000538489.5:ENST00000489294.2:ENST00000282169.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	27	2	3.91486	4.2273700000000005	4.53988	0.0450361	0.0202178	0.163255	0.109913
chr1	205094272	205094372	622142	0	-	0.35	(0.32,0.35]	chr1	73958	51	INTRON	INTRON	RBBP5	ENSG00000117222.14	ENST00000367164.1:ENST00000264515.11	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	3.91486	4.2273700000000005	4.53988	0.0450361	0.0202178	0.163255	0.109913
chr17	31316675	31316774	6593412	0	+	0.343434	(0.32,0.35]	chr17	641280	19	INTRON	INTRON	NF1	ENSG00000196712.20	ENST00000696138.1:ENST00000356175.7:ENST00000691014.1:ENST00000358273.9:ENST00000579081.5:ENST00000456735.6:ENST00000493220.5:ENST00000687863.1:ENST00000581113.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	27	2	3.91486	4.2273700000000005	4.53988	0.0450361	0.0202178	0.163255	0.109913
chr2	32968535	32968634	735676	0	+	0.343434	(0.32,0.35]	chr2	84876	192	INTRON	INTRON	LTBP1	ENSG00000049323.16	ENST00000404816.7	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	3.91486	4.2273700000000005	4.53988	0.0450361	0.0202178	0.163255	0.109913
chr21	6652523	6652623	7425697	0	-	0.34	(0.32,0.35]	chr21	757494	143	INTRON	INTRON	ENSG00000280145	ENSG00000280145.3	ENST00000625185.3:ENST00000623106.3:ENST00000624846.3:ENST00000623313.1:ENST00000624965.1	lncRNA	lncRNA	lncRNA	lncRNA	0	27	2	3.91486	4.2273700000000005	4.53988	0.0450361	0.0202178	0.163255	0.109913
chr4	26432774	26432872	1937825	0	+	0.336735	(0.32,0.35]	chr4	194470	19	UTR3	UTR3:EXON_MRNA	RBPJ	ENSG00000168214.22	ENST00000355476.8:ENST00000342320.8	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	3.91486	4.2273700000000005	4.53988	0.0450361	0.0202178	0.163255	0.109913
chr5	135371840	135371940	2728644	0	-	0.34	(0.32,0.35]	chr5	256825	13	INTRON	INTRON	MACROH2A1	ENSG00000113648.17	ENST00000511689.6:ENST00000304332.8:ENST00000687629.1:ENST00000688649.1:ENST00000312469.8:ENST00000360597.8:ENST00000506671.5:ENST00000423969.6:ENST00000510038.1:ENST00000507868.5:ENST00000508785.5:ENST00000513210.5:ENST00000508120.5:ENST00000506532.5:ENST00000506218.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	27	2	3.91486	4.2273700000000005	4.53988	0.0450361	0.0202178	0.163255	0.109913
chr7	74732762	74732862	3336017	0	+	0.35	(0.32,0.35]	chr7	310431	1	SS5_PROX	SS5_PROX:INTRON	GTF2I	ENSG00000263001.8	ENST00000650807.1:ENST00000690345.1:ENST00000573035.6:ENST00000614986.4:ENST00000620879.4:ENST00000621734.4:ENST00000491325.5:ENST00000620631.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	27	2	3.91486	4.2273700000000005	4.53988	0.0450361	0.0202178	0.163255	0.109913
chr7	100078500	100078581	3585226	0	-	0.333333	(0.32,0.35]	chr7	334073	3	SS5_PROX	SS5_PROX:INTRON	ZNF3	ENSG00000166526.18	ENST00000413658.6:ENST00000424697.5:ENST00000299667.9:ENST00000303915.10:ENST00000412947.6:ENST00000487620.1:ENST00000428683.5:ENST00000449785.5:ENST00000441298.5:ENST00000485892.5:ENST00000292393.9:ENST00000460331.5:ENST00000466121.1:ENST00000479192.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	27	2	3.91486	4.2273700000000005	4.53988	0.0450361	0.0202178	0.163255	0.109913
chr8	1767488	1767586	3691017	0	+	0.336735	(0.32,0.35]	chr8	342578	19	INTRON	INTRON	CLN8	ENSG00000182372.10	ENST00000524258.2:ENST00000519254.2:ENST00000635751.1:ENST00000331222.6:ENST00000636934.1:ENST00000637156.1:ENST00000635970.1:ENST00000637083.1:ENST00000520991.3:ENST00000637594.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	27	2	3.91486	4.2273700000000005	4.53988	0.0450361	0.0202178	0.163255	0.109913
chr6	158491798	158491896	3021152	0	+	0.44898	(0.44,0.476]	chr6	281751	17	INTRON	INTRON	TULP4	ENSG00000130338.13	ENST00000367097.8:ENST00000367094.6:ENST00000613390.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	52	2	3.2029	4.227345	5.25179	0.00308681	0.00124521	0.0510391	0.0322969
chr19	3960756	3960832	7118948	0	-	0.368421	(0.35,0.378]	chr19	716021	3	SS5_PROX	SS5_PROX:INTRON	DAPK3	ENSG00000167657.14	ENST00000545797.7:ENST00000301264.7:ENST00000595279.1:ENST00000594894.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	95	2	3.1438	4.22719	5.31058	0.00160599	9.93672e-5	0.0364977	0.00838841
chr12	79883127	79883227	5376014	0	-	0.36	(0.35,0.378]	chr12	512793	98	INTRON	INTRON	PPP1R12A	ENSG00000058272.19	ENST00000261207.9:ENST00000450142.7:ENST00000437004.6:ENST00000546369.5:ENST00000550107.5:ENST00000547330.5:ENST00000550510.5	protein_coding	protein_coding	protein_coding	protein_coding	2	73	2	2.87835	4.2269950000000005	5.57564	0.00160563	5.93654e-4	0.0367961	0.0225024
chr2	15621600	15621697	704102	0	+	0.360825	(0.35,0.378]	chr2	81702	6	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	DDX1	ENSG00000079785.16	ENST00000381341.7:ENST00000677302.1:ENST00000434671.2:ENST00000676759.1:ENST00000478695.2:ENST00000678786.1:ENST00000678536.1:ENST00000679227.1:ENST00000678755.1:ENST00000676937.1:ENST00000676916.1:ENST00000617198.5:ENST00000233084.8:ENST00000677437.1:ENST00000678137.1:ENST00000678594.1:ENST00000459706.2:ENST00000677355.1:ENST00000470674.2:ENST00000676635.1:ENST00000677552.1:ENST00000621973.2:ENST00000678391.1:ENST00000677649.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	73	2	2.87835	4.2269950000000005	5.57564	0.00160563	5.93654e-4	0.0367961	0.0225024
chr16	90203604	90203704	6424929	0	+	0.37	(0.35,0.378]	chr16	617268	90	INTRON	INTRON	LINC02193	ENSG00000260923.7	ENST00000568418.1:ENST00000656587.1:ENST00000668099.1:ENST00000569162.2:ENST00000665776.1:ENST00000669853.1:ENST00000668039.1:ENST00000658135.1:ENST00000663101.1:ENST00000663757.1:ENST00000568947.2	lncRNA	lncRNA	lncRNA	lncRNA	1	58	2	2.72498	4.226815	5.72865	0.0168499	3.18898e-4	0.11068	0.016499
chr9	133253402	133253500	4369804	0	-	0.428571	(0.408,0.44]	chr9	402031	37	EXON_LNCRNA	EXON_LNCRNA:INTRON	ABO	ENSG00000175164.16	ENST00000679909.1:ENST00000453660.4:ENST00000647353.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	106	2	2.17577	4.226705	6.27764	0.00269594	1.31526e-5	0.0479115	0.00286967
chr2	11326207	11326307	1068493	0	-	0.38	(0.378,0.408]	chr2	114093	381	INTRON	INTRON	ROCK2	ENSG00000134318.15	ENST00000315872.11:ENST00000261535.7:ENST00000462366.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	58	2	2.78946	4.2264800000000005	5.6635	0.0158859	7.77533e-5	0.101453	0.00735438
chr10	17693712	17693812	4399767	0	+	0.33	(0.32,0.35]	chr10	406185	4	SS5_PROX	SS5_PROX:INTRON	STAM	ENSG00000136738.15	ENST00000377524.8:ENST00000377500.1	protein_coding	protein_coding	protein_coding	protein_coding	1	60	2	3.68775	4.22638	4.76501	0.0114287	4.66127e-4	0.0886611	0.0195589
chr20	32804837	32804937	7257115	0	+	0.51	(0.476,0.515]	chr20	737229	1	SS3_PROX	SS3_PROX:INTRON	DNMT3B	ENSG00000088305.19	ENST00000696232.1:ENST00000328111.6:ENST00000696231.1:ENST00000348286.6:ENST00000353855.6:ENST00000696233.1:ENST00000443239.7:ENST00000456297.6:ENST00000201963.3:ENST00000696238.1:ENST00000696239.1:ENST00000696245.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	52	2	3.2463	4.226375	5.20645	0.00262374	0.00136049	0.0470772	0.0336321
chr3	15858776	15858876	1624435	0	-	0.34	(0.32,0.35]	chr3	168034	441	INTRON	INTRON	ANKRD28	ENSG00000206560.12	ENST00000399451.6:ENST00000412318.5:ENST00000439830.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	76	2	2.78706	4.22636	5.66566	0.00253645	6.06695e-4	0.0465056	0.0226059
chr17	38879077	38879177	6606496	0	+	0.31	(0.28,0.32]	chr17	643195	5	INTRON	INTRON	LASP1	ENSG00000002834.18	ENST00000433206.6:ENST00000585841.5:ENST00000318008.11:ENST00000443937.7:ENST00000584106.1:ENST00000435347.7:ENST00000419929.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	65	2	2.96187	4.226235	5.4906	0.0114995	4.89126e-4	0.0889104	0.0199693
chr2	26346488	26346588	715013	0	+	0.44	(0.408,0.44]	chr2	82570	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SELENOI	ENSG00000138018.19	ENST00000442141.5:ENST00000260585.12:ENST00000447170.1:ENST00000462301.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	74	2	3.37244	4.226135	5.07983	0.00247652	1.2469e-4	0.0446195	0.00953295
chr1	6591309	6591407	368131	0	-	0.571429	(0.57,1]	chr1	43243	7	UTR3	UTR3:EXON_MRNA	KLHL21	ENSG00000162413.17	ENST00000377663.3:ENST00000377658.8	protein_coding	protein_coding	protein_coding	protein_coding	8	177	2	3.5006	4.22612	4.95164	4.88666e-8	1.28889e-10	9.12413e-5	1.29974e-6
chr16	8044223	8044323	6440951	0	-	0.3	(0.28,0.32]	chr16	620351	366	INTRON	INTRON	ENSG00000260289	ENSG00000260289.2	ENST00000670665.1:ENST00000654046.1:ENST00000567103.2	lncRNA	lncRNA	lncRNA	lncRNA	1	60	2	3.35108	4.225885	5.10069	0.00610574	0.00221345	0.0676501	0.0435144
chr5	138515386	138515485	2732387	0	-	0.323232	(0.32,0.35]	chr5	257395	13	INTRON	INTRON	ETF1	ENSG00000120705.13	ENST00000360541.10:ENST00000499810.6:ENST00000503014.5:ENST00000506345.5:ENST00000512198.1:ENST00000503183.1:ENST00000572514.5:ENST00000507939.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	76	2	2.7493	4.225849999999999	5.7024	0.00296357	5.25722e-4	0.0500135	0.0210958
chr1	9727735	9727833	18668	0	+	0.428571	(0.408,0.44]	chr1	1792	8	UTR3	UTR3:EXON_MRNA	PIK3CD	ENSG00000171608.17	ENST00000377346.9:ENST00000628140.2	protein_coding	protein_coding	protein_coding	protein_coding	1	52	2	3.25948	4.22575	5.19202	0.00246454	0.0016671	0.0459102	0.0369207
chr8	123349944	123350043	4042157	0	-	0.414141	(0.408,0.44]	chr8	368721	1	INTRON	INTRON	ATAD2	ENSG00000156802.13	ENST00000287394.10:ENST00000517666.5:ENST00000521903.5:ENST00000519124.5:ENST00000521496.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	52	2	3.25948	4.22575	5.19202	0.00246454	0.0016671	0.0459102	0.0369207
chr8	125210883	125210983	3854682	0	+	0.47	(0.44,0.476]	chr8	355249	282	INTRON	INTRON	NSMCE2	ENSG00000156831.8	ENST00000517532.5:ENST00000287437.8:ENST00000522563.5:ENST00000517315.1	protein_coding	protein_coding	protein_coding	protein_coding	1	56	2	3.26669	4.22575	5.18481	0.00305435	6.21872e-4	0.0493883	0.0223951
chr18	13018079	13018179	6876844	0	+	0.4	(0.378,0.408]	chr18	681382	2	SS3_PROX	SS3_PROX:INTRON	CEP192	ENSG00000101639.19	ENST00000325971.12:ENST00000506447.5:ENST00000589596.5:ENST00000513432.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	71	2	2.70298	4.2254249999999995	5.74787	0.00325723	2.21531e-4	0.0524329	0.0136064
chrX	20225958	20226058	7772995	0	-	0.45	(0.44,0.476]	chrX	794562	71	INTRON	INTRON	RPS6KA3	ENSG00000177189.14	ENST00000379565.9:ENST00000643085.1:ENST00000645270.1:ENST00000643402.1:ENST00000644368.1:ENST00000647265.1:ENST00000645268.1:ENST00000643073.1:ENST00000646610.1:ENST00000643337.1:ENST00000642835.1:ENST00000644893.1:ENST00000438357.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	53	2	3.55068	4.22534	4.9	0.00423315	7.06861e-4	0.0572185	0.0241881
chrX	73973767	73973867	7682396	0	+	0.5	(0.476,0.515]	chrX	786638	54	INTRON	INTRON	JPX	ENSG00000225470.8	ENST00000664637.1:ENST00000639185.1:ENST00000655090.1:ENST00000640437.1:ENST00000660546.1:ENST00000667886.1:ENST00000660840.1:ENST00000657179.1:ENST00000670506.1:ENST00000657910.1:ENST00000662120.1:ENST00000671207.1:ENST00000659254.1:ENST00000656624.1:ENST00000667573.1:ENST00000660856.1:ENST00000660836.1:ENST00000668590.1:ENST00000658649.1:ENST00000414209.6:ENST00000654137.1:ENST00000670994.1:ENST00000602772.5:ENST00000655879.1:ENST00000657372.1:ENST00000657096.1:ENST00000602985.6:ENST00000670685.1:ENST00000670503.1:ENST00000663027.1:ENST00000654995.1:ENST00000602895.6:ENST00000654374.1:ENST00000660087.1:ENST00000665032.1:ENST00000671336.1:ENST00000671476.1:ENST00000667057.1:ENST00000670192.1:ENST00000670464.1:ENST00000665345.1:ENST00000661546.1:ENST00000662543.1:ENST00000602938.6:ENST00000664295.1:ENST00000654005.1:ENST00000669149.1:ENST00000659852.1:ENST00000656509.1:ENST00000602294.6:ENST00000667294.1:ENST00000663470.1:ENST00000602920.6:ENST00000671021.1:ENST00000659849.1:ENST00000667937.1:ENST00000661130.1:ENST00000654196.1:ENST00000655994.1:ENST00000659373.1:ENST00000662239.1:ENST00000670805.1:ENST00000656263.1:ENST00000653069.1:ENST00000657638.1:ENST00000653808.1:ENST00000653929.1:ENST00000653885.1:ENST00000659023.1:ENST00000602546.5:ENST00000659622.1:ENST00000671518.1:ENST00000670408.1	lncRNA	lncRNA	lncRNA	lncRNA	1	52	2	3.19119	4.22532	5.25945	0.00325748	0.00111445	0.0524329	0.0306328
chr6	41530218	41530318	3092736	0	-	0.36	(0.35,0.378]	chr6	289355	56	INTRON	INTRON	FOXP4-AS1	ENSG00000234753.6	ENST00000691406.1:ENST00000440194.1:ENST00000439386.2:ENST00000454812.1:ENST00000414386.6:ENST00000432751.1	lncRNA	lncRNA	lncRNA	lncRNA	1	57	2	2.79643	4.2253	5.65417	0.013543	4.33402e-4	0.101363	0.0190829
chr1	34852436	34852535	419811	0	-	0.313131	(0.28,0.32]	chr1	50510	22	UTR3	UTR3:EXON_MRNA:INTRON	SMIM12	ENSG00000163866.9	ENST00000426886.1:ENST00000521580.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	65	2	2.87382	4.224995	5.57617	0.014868	3.41866e-4	0.0989021	0.0164909
chr1	246186242	246186342	677495	0	-	0.32	(0.28,0.32]	chr1	79722	1	SS5_PROX	SS5_PROX:INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000391836.3:ENST00000453676.5:ENST00000462422.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	66	2	2.67975	4.22499	5.77023	0.0252505	1.45293e-4	0.12011	0.0104769
chr22	21505354	21505454	7560144	0	-	0.28	[0,0.28]	chr22	773318	129	INTRON	INTRON	PI4KAP2	ENSG00000183506.17	ENST00000450651.5:ENST00000467443.5:ENST00000479693.1:ENST00000476537.1:ENST00000491562.5	transcribed_unitary_pseudogene	retained_intron	transcribed_unitary_pseudogene	retained_intron:processed_transcript	2	162	2	4.2027	4.224955	4.24721	1.58223e-4	5.15143e-5	0.0114656	0.00585477
chr5	177028031	177028131	2552984	0	+	0.4	(0.378,0.408]	chr5	243771	44	INTRON	INTRON	ZNF346	ENSG00000113761.12	ENST00000512315.5:ENST00000358149.8:ENST00000506693.5:ENST00000503425.5:ENST00000508155.5:ENST00000511834.5:ENST00000503039.1:ENST00000513587.5:ENST00000510933.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	59	2	3.39872	4.2248149999999995	5.05091	0.0019852	0.00118558	0.0404516	0.031662
chr19	49649485	49649583	7090208	0	+	0.428571	(0.408,0.44]	chr19	710079	23	INTRON	INTRON	SCAF1	ENSG00000126461.15	ENST00000360565.8:ENST00000598359.5	protein_coding	protein_coding	protein_coding	protein_coding	1	52	2	3.31257	4.224795	5.13702	0.00202889	0.00198621	0.0411469	0.04086
chr1	225858596	225858695	645968	0	-	0.434343	(0.408,0.44]	chr1	76464	12	INTRON	INTRON	TMEM63A	ENSG00000196187.12	ENST00000366835.8:ENST00000487971.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	52	2	3.20437	4.22469	5.24501	0.00306596	0.00137378	0.0509893	0.0336718
chr11	17076547	17076647	4927723	0	-	0.48	(0.476,0.515]	chr11	461300	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	RPS13	ENSG00000110700.7	ENST00000525634.6:ENST00000526895.5:ENST00000228140.6:ENST00000525828.1:ENST00000533969.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	11	478	2	3.79847	4.22457	4.65067	3.17985e-8	1.56446e-9	6.45198e-5	1.07355e-5
chr6	4852802	4852902	2791627	0	+	0.52	(0.515,0.57]	chr6	263602	161	INTRON	INTRON	CDYL	ENSG00000153046.18	ENST00000328908.9:ENST00000491864.1:ENST00000440139.5:ENST00000483019.1:ENST00000397588.8:ENST00000472453.5:ENST00000449732.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	106	2	2.5483	4.22454	5.90078	4.26839e-4	8.21951e-6	0.0189958	0.00206883
chr12	68646799	68646898	5161567	0	+	0.343434	(0.32,0.35]	chr12	488591	53	INTRON	INTRON	RAP1B	ENSG00000127314.18	ENST00000460800.5:ENST00000393436.9:ENST00000250559.14:ENST00000425247.6:ENST00000501412.2:ENST00000450214.6:ENST00000463493.5:ENST00000537460.5:ENST00000341355.9:ENST00000538283.5:ENST00000541167.5:ENST00000422358.6:ENST00000489473.6:ENST00000545270.5:ENST00000538980.5:ENST00000543393.5:ENST00000542018.5:ENST00000540209.5:ENST00000378985.7:ENST00000453560.6:ENST00000534899.5:ENST00000542145.5:ENST00000539091.5:ENST00000535492.5:ENST00000540781.5:ENST00000485252.6:ENST00000538877.5:ENST00000541386.5:ENST00000543697.5:ENST00000545720.6:ENST00000541216.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	76	2	2.85974	4.224485	5.58923	0.00186579	8.12357e-4	0.0399675	0.0263656
chr3	33089820	33089920	1651093	0	-	0.27	[0,0.28]	chr3	169303	122	INTRON	INTRON	GLB1	ENSG00000170266.16	ENST00000399402.7:ENST00000307363.10:ENST00000307377.12:ENST00000482097.5:ENST00000485698.5:ENST00000498537.5:ENST00000415454.1:ENST00000438227.1:ENST00000440656.1:ENST00000464355.1:ENST00000450835.1:ENST00000436768.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	65	2	3.33854	4.224435	5.11033	0.00991388	0.00278022	0.0838372	0.0488412
chr1	70334557	70334657	480667	0	-	0.5	(0.476,0.515]	chr1	57764	92	INTRON	INTRON	ANKRD13C	ENSG00000118454.13	ENST00000370944.9:ENST00000262346.6	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	4.01777	4.224349999999999	4.43093	0.0411361	0.00931369	0.1451	0.0855292
chr11	10460328	10460426	4733989	0	+	0.489796	(0.476,0.515]	chr11	438320	36	INTRON	INTRON	AMPD3	ENSG00000133805.16	ENST00000532250.5:ENST00000444303.6:ENST00000529835.6:ENST00000396554.7:ENST00000524866.5:ENST00000534047.5:ENST00000396553.7:ENST00000529834.5:ENST00000528723.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	25	2	4.01777	4.224349999999999	4.43093	0.0411361	0.00931369	0.1451	0.0855292
chr13	95743646	95743746	5517864	0	+	0.49	(0.476,0.515]	chr13	527661	180	INTRON	INTRON	DNAJC3	ENSG00000102580.15	ENST00000602402.6:ENST00000376795.6	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	4.01777	4.224349999999999	4.43093	0.0411361	0.00931369	0.1451	0.0855292
chr2	61461164	61461264	1130458	0	-	0.49	(0.476,0.515]	chr2	121499	400	INTRON	INTRON	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000453133.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	25	2	4.01777	4.224349999999999	4.43093	0.0411361	0.00931369	0.1451	0.0855292
chr3	16276597	16276697	1374992	0	+	0.48	(0.476,0.515]	chr3	144974	39	INTRON	INTRON	OXNAD1	ENSG00000154814.14	ENST00000627468.2:ENST00000605932.5:ENST00000442255.5:ENST00000435829.6:ENST00000285083.10:ENST00000452581.5:ENST00000606098.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	25	2	4.01777	4.224349999999999	4.43093	0.0411361	0.00931369	0.1451	0.0855292
chr4	77724387	77724486	2166068	0	-	0.515152	(0.476,0.515]	chr4	213651	34	INTRON	INTRON	CNOT6L	ENSG00000138767.14	ENST00000504123.7:ENST00000649644.1:ENST00000515506.6:ENST00000512485.6:ENST00000504804.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	25	2	4.01777	4.224349999999999	4.43093	0.0411361	0.00931369	0.1451	0.0855292
chr9	122894807	122894905	4338528	0	-	0.489796	(0.476,0.515]	chr9	398785	14	INTRON	INTRON	RC3H2	ENSG00000056586.16	ENST00000357244.7:ENST00000373670.5:ENST00000498479.5:ENST00000423239.6:ENST00000335387.9:ENST00000478216.1:ENST00000471874.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	25	2	4.01777	4.224349999999999	4.43093	0.0411361	0.00931369	0.1451	0.0855292
chr9	137105115	137105213	4222839	0	+	0.418367	(0.408,0.44]	chr9	387932	36	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	MAN1B1	ENSG00000177239.16	ENST00000682881.1:ENST00000683324.1:ENST00000684138.1:ENST00000683135.1:ENST00000542372.2:ENST00000371587.9:ENST00000684366.1:ENST00000684229.1:ENST00000683355.1:ENST00000682117.1:ENST00000683475.1:ENST00000682425.1:ENST00000684645.1:ENST00000683979.1:ENST00000371589.9:ENST00000535144.6:ENST00000684272.1:ENST00000475449.7:ENST00000684759.1:ENST00000545539.6:ENST00000684144.1:ENST00000683987.1:ENST00000682212.1:ENST00000544448.6:ENST00000684297.1:ENST00000474902.5:ENST00000682964.1:ENST00000535028.6:ENST00000536349.6:ENST00000684336.1:ENST00000540391.5:ENST00000480100.3:ENST00000682502.1:ENST00000536268.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	70	2	3.05533	4.224265	5.3932	7.81492e-4	6.50769e-4	0.0257168	0.0231135
chr1	243088144	243088232	667238	0	-	0.443182	(0.44,0.476]	chr1	79161	6	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO	LINC01347	ENSG00000214837.8	ENST00000627498.2:ENST00000417964.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	1	52	2	3.14559	4.224245	5.3029	0.00384923	0.00102616	0.0562562	0.029231300000000002
chr15	59663674	59663772	6194520	0	-	0.255102	[0,0.28]	chr15	590172	47	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	ENSG00000227161:BNIP2	ENSG00000227161.1:ENSG00000140299.13	ENST00000441746.1:ENST00000267859.8:ENST00000607373.6:ENST00000612191.4:ENST00000478981.1:ENST00000439052.5:ENST00000415213.7	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA:processed_transcript	1	65	2	2.8569	4.22406	5.59122	0.013822	0.00247649	0.10247	0.0446195
chr1	1649937	1650037	360520	0	-	0.5	(0.476,0.515]	chr1	41941	3	SS3_PROX	SS3_PROX:INTRON	CDK11B	ENSG00000248333.9	ENST00000341832.11:ENST00000407249.7:ENST00000340677.9:ENST00000611150.3:ENST00000615951.4:ENST00000626918.2:ENST00000629289.2:ENST00000629312.2:ENST00000341028.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	25	2	4.10113	4.2238050000000005	4.34648	0.0226984	0.0193566	0.124921	0.108861
chr1	31306958	31307057	61259	0	+	0.494949	(0.476,0.515]	chr1	7820	94	INTRON	INTRON	ZCCHC17	ENSG00000121766.16	ENST00000618216.4:ENST00000546109.5:ENST00000616393.4:ENST00000616859.4:ENST00000615916.4:ENST00000479629.5:ENST00000373714.5:ENST00000344147.10:ENST00000627541.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	25	2	4.10113	4.2238050000000005	4.34648	0.0226984	0.0193566	0.124921	0.108861
chr10	31392992	31393092	4416879	0	+	0.51	(0.476,0.515]	chr10	407405	29	INTRON	INTRON	ZEB1	ENSG00000148516.23	ENST00000488625.6:ENST00000560196.5:ENST00000542879.5:ENST00000561304.5:ENST00000320985.14:ENST00000560721.6:ENST00000559858.5:ENST00000558440.5:ENST00000437844.6:ENST00000424869.6:ENST00000542815.7:ENST00000558863.5:ENST00000561212.5:ENST00000558655.5:ENST00000561061.5:ENST00000559496.5:ENST00000446923.7:ENST00000557827.5:ENST00000606671.5:ENST00000606161.1:ENST00000493835.5:ENST00000560909.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	25	2	4.10113	4.2238050000000005	4.34648	0.0226984	0.0193566	0.124921	0.108861
chr10	73867888	73867988	4652798	0	-	0.5	(0.476,0.515]	chr10	428435	66	INTRON	INTRON	CAMK2G	ENSG00000148660.21	ENST00000322680.7:ENST00000322635.7:ENST00000423381.6:ENST00000351293.7:ENST00000372765.5:ENST00000305762.11:ENST00000394762.7:ENST00000472912.5:ENST00000441192.2:ENST00000680035.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	25	2	4.10113	4.2238050000000005	4.34648	0.0226984	0.0193566	0.124921	0.108861
chr10	80158525	80158599	4657773	0	-	0.513514	(0.476,0.515]	chr10	429068	1	INTRON	INTRON	ANXA11	ENSG00000122359.18	ENST00000372231.7:ENST00000438331.5:ENST00000422982.8:ENST00000265447.8:ENST00000447489.1	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	4.10113	4.2238050000000005	4.34648	0.0226984	0.0193566	0.124921	0.108861
chr16	47537976	47538075	6344074	0	+	0.484848	(0.476,0.515]	chr16	608885	82	INTRON	INTRON	PHKB	ENSG00000102893.17	ENST00000566037.6:ENST00000566044.5:ENST00000299167.12:ENST00000696809.1:ENST00000323584.10:ENST00000565424.2:ENST00000567402.5:ENST00000570047.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	25	2	4.10113	4.2238050000000005	4.34648	0.0226984	0.0193566	0.124921	0.108861
chr17	36985517	36985617	6602877	0	+	0.48	(0.476,0.515]	chr17	642673	313	INTRON	INTRON	AATF	ENSG00000275700.6	ENST00000680340.1:ENST00000680356.1:ENST00000616434.2:ENST00000680579.1:ENST00000681800.1:ENST00000680330.1:ENST00000680807.1:ENST00000679985.1:ENST00000679508.1:ENST00000619387.5:ENST00000679997.1:ENST00000613840.1:ENST00000681062.1:ENST00000679881.1:ENST00000680782.1:ENST00000679600.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	25	2	4.10113	4.2238050000000005	4.34648	0.0226984	0.0193566	0.124921	0.108861
chr17	41828126	41828207	6769496	0	-	0.493827	(0.476,0.515]	chr17	666369	1	INTRON	INTRON	NT5C3B	ENSG00000141698.17	ENST00000435506.7:ENST00000523903.5:ENST00000469698.5:ENST00000517701.5:ENST00000521789.5:ENST00000470690.5:ENST00000393910.5:ENST00000415460.5:ENST00000445655.5:ENST00000476921.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	25	2	4.10113	4.2238050000000005	4.34648	0.0226984	0.0193566	0.124921	0.108861
chr17	80563872	80563972	6684975	0	+	0.48	(0.476,0.515]	chr17	653399	177	INTRON	INTRON	RPTOR	ENSG00000141564.15	ENST00000574767.5:ENST00000577161.5:ENST00000306801.8:ENST00000649732.1:ENST00000570891.5:ENST00000544334.6:ENST00000573746.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	25	2	4.10113	4.2238050000000005	4.34648	0.0226984	0.0193566	0.124921	0.108861
chr2	170040281	170040381	910311	0	+	0.48	(0.476,0.515]	chr2	100418	105	INTRON	INTRON	UBR3	ENSG00000144357.18	ENST00000272793.11:ENST00000430321.5:ENST00000392632.6:ENST00000439681.1:ENST00000444475.5:ENST00000474426.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	25	2	4.10113	4.2238050000000005	4.34648	0.0226984	0.0193566	0.124921	0.108861
chr3	128112088	128112188	1813109	0	-	0.48	(0.476,0.515]	chr3	182183	68	INTRON	INTRON	RUVBL1	ENSG00000175792.12	ENST00000464873.5:ENST00000322623.10	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	4.10113	4.2238050000000005	4.34648	0.0226984	0.0193566	0.124921	0.108861
chr5	10291281	10291380	2567323	0	-	0.50505	(0.476,0.515]	chr5	246101	1	INTRON	INTRON	CMBL	ENSG00000164237.9	ENST00000296658.4:ENST00000510532.5:ENST00000511963.5:ENST00000506821.1:ENST00000514202.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	25	2	4.10113	4.2238050000000005	4.34648	0.0226984	0.0193566	0.124921	0.108861
chr5	132897631	132897729	2724592	0	-	0.479592	(0.476,0.515]	chr5	256286	4	SS3_PROX	SS3_PROX:INTRON	AFF4	ENSG00000072364.13	ENST00000265343.10:ENST00000378595.7:ENST00000478588.5:ENST00000425658.1:ENST00000378593.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	25	2	4.10113	4.2238050000000005	4.34648	0.0226984	0.0193566	0.124921	0.108861
chr5	169853831	169853931	2543202	0	+	0.49	(0.476,0.515]	chr5	242782	124	INTRON	INTRON	DOCK2	ENSG00000134516.20	ENST00000520908.7:ENST00000522138.2:ENST00000524185.5:ENST00000519628.2:ENST00000523351.6:ENST00000520181.5:ENST00000696258.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	25	2	4.10113	4.2238050000000005	4.34648	0.0226984	0.0193566	0.124921	0.108861
chr6	90579883	90579982	3162725	0	-	0.50505	(0.476,0.515]	chr6	294985	77	INTRON	INTRON	MAP3K7	ENSG00000135341.18	ENST00000369332.7:ENST00000369327.7:ENST00000369325.7:ENST00000369329.8	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	4.10113	4.2238050000000005	4.34648	0.0226984	0.0193566	0.124921	0.108861
chr9	111900711	111900811	4184490	0	+	0.49	(0.476,0.515]	chr9	381684	30	INTRON	INTRON	UGCG	ENSG00000148154.10	ENST00000374279.4:ENST00000489355.1:ENST00000495085.1:ENST00000490110.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	25	2	4.10113	4.2238050000000005	4.34648	0.0226984	0.0193566	0.124921	0.108861
chr7	100337346	100337446	3364341	0	+	0.27	[0,0.28]	chr7	314620	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	STAG3L5P:STAG3L5P-PVRIG2P-PILRB	ENSG00000242294.6:ENSG00000272752.6	ENST00000473757.5:ENST00000470714.5:ENST00000310771.8:ENST00000483329.6:ENST00000422479.5:ENST00000414292.5:ENST00000444874.5:ENST00000488972.6	lncRNA	retained_intron	lncRNA:transcribed_unprocessed_pseudogene	retained_intron:lncRNA:processed_transcript	2	88	2	2.41169	4.223675	6.03566	0.0122872	5.43045e-4	0.0970106	0.0215026
chr21	44941485	44941584	7417474	0	+	0.494949	(0.476,0.515]	chr21	756215	9	INTRON	INTRON	SLX9	ENSG00000160256.13	ENST00000397826.7:ENST00000458015.1:ENST00000291634.11	protein_coding	protein_coding	protein_coding	protein_coding	2	76	2	3.00035	4.22344	5.44653	0.00109036	2.03754e-4	0.0303873	0.0124395
chr15	34871422	34871517	6134160	0	-	0.484211	(0.476,0.515]	chr15	584456	1	INTRON	INTRON	AQR	ENSG00000021776.11	ENST00000156471.10:ENST00000543879.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	53	2	3.53895	4.22328	4.90761	0.00386428	0.00075485700000000005	0.0542786	0.0251966
chr9	128070478	128070578	4202454	0	+	0.5	(0.476,0.515]	chr9	383913	15	INTRON	INTRON	SLC25A25	ENSG00000148339.13	ENST00000373068.6:ENST00000373069.10	protein_coding	protein_coding	protein_coding	protein_coding	1	53	2	3.53895	4.22328	4.90761	0.00386428	0.00075485700000000005	0.0542786	0.0251966
chr11	66640339	66640434	4811046	0	+	0.378947	(0.378,0.408]	chr11	447892	2	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	RBM14-RBM4:RBM4	ENSG00000248643.5:ENSG00000173933.21	ENST00000412278.2:ENST00000421355.1:ENST00000500635.2:ENST00000396053.9:ENST00000408993.6:ENST00000578778.5:ENST00000398692.8:ENST00000483858.5:ENST00000310092.12:ENST00000510173.6:ENST00000528039.5:ENST00000506523.6:ENST00000530235.1:ENST00000409406.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	161	2	3.89911	4.22323	4.54735	1.26956e-5	3.0154e-6	0.00282525	0.00111586
chrX	49236186	49236285	7659499	0	+	0.464646	(0.44,0.476]	chrX	784098	1	INTRON	INTRON	CCDC22	ENSG00000101997.13	ENST00000376227.4:ENST00000496651.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	205	2	4.14514	4.22314	4.30114	9.51742e-7	8.39143e-7	5.6313e-4	5.54959e-4
chr17	78215565	78215665	6682183	0	+	0.41	(0.408,0.44]	chr17	652748	2	SS3_PROX	SS3_PROX:INTRON	BIRC5	ENSG00000089685.15	ENST00000301633.8:ENST00000350051.8:ENST00000590925.6:ENST00000374948.6:ENST00000592734.5:ENST00000592115.5:ENST00000586192.5:ENST00000587746.5:ENST00000591800.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	96	2	2.19398	4.22298	6.25198	0.0043348	1.50663e-5	0.0600652	0.00311444
chr1	15522479	15522578	380738	0	-	0.373737	(0.35,0.378]	chr1	44657	21	INTRON	INTRON	CASP9	ENSG00000132906.18	ENST00000546424.5:ENST00000333868.10:ENST00000348549.9:ENST00000400777.7:ENST00000375890.8:ENST00000474305.2:ENST00000447522.5:ENST00000440484.1:ENST00000546969.1:ENST00000469637.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	27	2	3.80129	4.22293	4.64457	0.0504034	0.012652	0.17488	0.0926667
chr4	4674725	4674825	1920177	0	+	0.37	(0.35,0.378]	chr4	192905	248	INTRON	INTRON	STX18-AS1	ENSG00000247708.8	ENST00000664571.1:ENST00000670162.1:ENST00000656969.1:ENST00000664283.1:ENST00000608184.2:ENST00000653097.1:ENST00000499430.7:ENST00000610009.5:ENST00000665126.1:ENST00000655855.1	lncRNA	lncRNA	lncRNA	lncRNA	0	27	2	3.80129	4.22293	4.64457	0.0504034	0.012652	0.17488	0.0926667
chr6	42754106	42754206	2866483	0	+	0.36	(0.35,0.378]	chr6	271284	67	INTRON	INTRON	BICRAL	ENSG00000112624.13	ENST00000614467.4	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	3.80129	4.22293	4.64457	0.0504034	0.012652	0.17488	0.0926667
chr1	224996397	224996496	323036	0	+	0.444444	(0.44,0.476]	chr1	37166	219	INTRON	INTRON	DNAH14	ENSG00000185842.16	ENST00000445597.6:ENST00000430092.5:ENST00000400952.7:ENST00000682510.1:ENST00000366849.5:ENST00000439375.6	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	4.01038	4.222815	4.43525	0.0433743	0.00897296	0.148082	0.0849778
chr10	73399829	73399924	4649276	0	-	0.452632	(0.44,0.476]	chr10	427793	11	INTRON	INTRON	ANXA7	ENSG00000138279.16	ENST00000372921.10:ENST00000372919.8:ENST00000492380.1:ENST00000394847.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	25	2	4.01038	4.222815	4.43525	0.0433743	0.00897296	0.148082	0.0849778
chr10	94414559	94414658	4498281	0	+	0.454545	(0.44,0.476]	chr10	414130	106	INTRON	INTRON	TBC1D12	ENSG00000108239.9	ENST00000225235.5	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	4.01038	4.222815	4.43525	0.0433743	0.00897296	0.148082	0.0849778
chr16	84096988	84097086	6532005	0	-	0.44898	(0.44,0.476]	chr16	632921	8	INTRON	INTRON	MBTPS1	ENSG00000140943.18	ENST00000343411.8:ENST00000570012.1	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	4.01038	4.222815	4.43525	0.0433743	0.00897296	0.148082	0.0849778
chr17	57492578	57492678	6635123	0	+	0.45	(0.44,0.476]	chr17	648062	49	INTRON	INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000674961.1:ENST00000582453.5:ENST00000675656.1:ENST00000322684.7:ENST00000442934.6:ENST00000579180.2:ENST00000579205.5:ENST00000579505.5:ENST00000582772.1:ENST00000674898.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	25	2	4.01038	4.222815	4.43525	0.0433743	0.00897296	0.148082	0.0849778
chr17	80548988	80549088	6684826	0	+	0.46	(0.44,0.476]	chr17	653399	28	INTRON	INTRON	RPTOR	ENSG00000141564.15	ENST00000574767.5:ENST00000577161.5:ENST00000306801.8:ENST00000649732.1:ENST00000570891.5:ENST00000544334.6:ENST00000573746.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	25	2	4.01038	4.222815	4.43525	0.0433743	0.00897296	0.148082	0.0849778
chr19	43775947	43776040	7188308	0	-	0.473118	(0.44,0.476]	chr19	727630	10	INTRON	INTRON	KCNN4	ENSG00000104783.15	ENST00000648319.1:ENST00000599720.5:ENST00000599107.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	25	2	4.01038	4.222815	4.43525	0.0433743	0.00897296	0.148082	0.0849778
chr2	62302736	62302836	790354	0	+	0.47	(0.44,0.476]	chr2	88708	49	INTRON	INTRON	ENSG00000228541	ENSG00000228541.2	ENST00000688476.1:ENST00000689590.1:ENST00000687402.1:ENST00000687773.1	lncRNA	lncRNA	lncRNA	lncRNA	0	25	2	4.01038	4.222815	4.43525	0.0433743	0.00897296	0.148082	0.0849778
chr2	101841728	101841823	837509	0	+	0.452632	(0.44,0.476]	chr2	93952	14	INTRON	INTRON	MAP4K4	ENSG00000071054.17	ENST00000324219.9:ENST00000350878.9:ENST00000425019.6:ENST00000625522.3:ENST00000413150.6:ENST00000634702.1:ENST00000456652.5:ENST00000347699.8:ENST00000417294.5:ENST00000627726.3:ENST00000476609.1:ENST00000421882.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	25	2	4.01038	4.222815	4.43525	0.0433743	0.00897296	0.148082	0.0849778
chr21	15739624	15739724	7370191	0	+	0.45	(0.44,0.476]	chr21	752186	88	INTRON	INTRON	USP25	ENSG00000155313.16	ENST00000400183.7:ENST00000285681.6:ENST00000285679.10:ENST00000351097.9	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	4.01038	4.222815	4.43525	0.0433743	0.00897296	0.148082	0.0849778
chr6	129580631	129580729	3217502	0	-	0.469388	(0.44,0.476]	chr6	299052	1	INTRON	INTRON	ARHGAP18	ENSG00000146376.11	ENST00000368149.3:ENST00000463225.1:ENST00000483367.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	25	2	4.01038	4.222815	4.43525	0.0433743	0.00897296	0.148082	0.0849778
chr6	149627671	149627771	3245911	0	-	0.45	(0.44,0.476]	chr6	301588	40	INTRON	INTRON	KATNA1	ENSG00000186625.14	ENST00000335643.12:ENST00000367411.7:ENST00000335647.9:ENST00000470620.1:ENST00000444282.5:ENST00000420200.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	25	2	4.01038	4.222815	4.43525	0.0433743	0.00897296	0.148082	0.0849778
chr7	66758369	66758469	3325653	0	+	0.45	(0.44,0.476]	chr7	309238	19	INTRON	INTRON	RABGEF1	ENSG00000154710.18	ENST00000607882.5:ENST00000284957.9:ENST00000450873.6:ENST00000442563.5:ENST00000439720.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	25	2	4.01038	4.222815	4.43525	0.0433743	0.00897296	0.148082	0.0849778
chr7	102177869	102177968	3369984	0	+	0.444444	(0.44,0.476]	chr7	315286	70	INTRON	INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000560541.5:ENST00000558836.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	25	2	4.01038	4.222815	4.43525	0.0433743	0.00897296	0.148082	0.0849778
chr7	127960999	127961099	3405511	0	+	0.45	(0.44,0.476]	chr7	318177	114	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000486037.1:ENST00000484767.5:ENST00000492840.1:ENST00000470723.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	25	2	4.01038	4.222815	4.43525	0.0433743	0.00897296	0.148082	0.0849778
chr8	27512410	27512506	3721397	0	+	0.46875	(0.44,0.476]	chr8	345846	1	INTRON	INTRON	EPHX2	ENSG00000120915.14	ENST00000517536.5:ENST00000520623.5:ENST00000521400.6:ENST00000521780.5:ENST00000380476.7:ENST00000518379.5:ENST00000521684.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	25	2	4.01038	4.222815	4.43525	0.0433743	0.00897296	0.148082	0.0849778
chr9	94984025	94984125	4165634	0	+	0.47	(0.44,0.476]	chr9	379638	42	INTRON	INTRON	AOPEP	ENSG00000148120.18	ENST00000375315.8:ENST00000297979.9:ENST00000424143.5:ENST00000462125.5:ENST00000479161.5:ENST00000451893.5:ENST00000460573.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	25	2	4.01038	4.222815	4.43525	0.0433743	0.00897296	0.148082	0.0849778
chr19	20644302	20644401	7157970	0	-	0.434343	(0.408,0.44]	chr19	723625	183	INTRON	INTRON	ZNF626	ENSG00000188171.17	ENST00000601440.6:ENST00000595405.1	protein_coding	protein_coding	protein_coding	protein_coding	1	53	2	3.55215	4.22271	4.89327	0.00458906	7.01039e-4	0.0595107	0.0241881
chr7	76058876	76058976	3339766	0	+	0.52	(0.515,0.57]	chr7	311009	4	INTRON	INTRON	MDH2	ENSG00000146701.12	ENST00000443006.5:ENST00000315758.10:ENST00000432020.2	protein_coding	protein_coding	protein_coding	protein_coding	2	99	2	4.21079	4.22252	4.23425	2.50651e-5	1.40595e-5	0.00413279	0.00279379
chr5	71046103	71046200	2639116	0	-	0.195876	[0,0.28]	chr5	250753	2	INTRON	INTRON	GTF2H2	ENSG00000145736.14	ENST00000274400.9:ENST00000519783.5:ENST00000330280.11:ENST00000518898.6:ENST00000517900.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	64	2	3.09587	4.222385	5.3489	0.00651565	0.00514751	0.0735232	0.062965
chr2	110666914	110666967	1206751	0	-	0.396226	(0.378,0.408]	chr2	128700	1	INTRON	INTRON	BUB1	ENSG00000169679.15	ENST00000302759.11:ENST00000535254.6:ENST00000409311.5:ENST00000466333.5:ENST00000666956.1:ENST00000465029.5:ENST00000477481.1:ENST00000468927.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	57	2	3.00568	4.222300000000001	5.43892	0.00811866	2.28412e-4	0.0766625	0.0133228
chr1	43869563	43869662	87719	0	+	0.464646	(0.44,0.476]	chr1	11714	109	INTRON	INTRON	ST3GAL3	ENSG00000126091.21	ENST00000646096.1:ENST00000643597.1:ENST00000643886.1:ENST00000372372.7:ENST00000545417.5:ENST00000330208.6:ENST00000335430.10:ENST00000361400.9:ENST00000347631.8:ENST00000642331.1:ENST00000647237.1:ENST00000643252.1:ENST00000372374.7:ENST00000361392.9:ENST00000533997.6:ENST00000353126.8:ENST00000645640.1:ENST00000642934.1:ENST00000643283.1:ENST00000351035.8:ENST00000642949.1:ENST00000489897.6:ENST00000646971.1:ENST00000645142.1:ENST00000645705.1:ENST00000530154.5:ENST00000646027.1:ENST00000646069.1:ENST00000642504.1:ENST00000647148.1:ENST00000262915.8:ENST00000647482.1:ENST00000645394.1:ENST00000647128.1:ENST00000361746.9:ENST00000645034.1:ENST00000645165.1:ENST00000647134.1:ENST00000644195.1:ENST00000642194.1:ENST00000372368.7:ENST00000646686.1:ENST00000372366.6:ENST00000361812.9:ENST00000469715.6:ENST00000372369.5:ENST00000372367.5:ENST00000372365.5:ENST00000528371.5:ENST00000533212.5:ENST00000530581.5:ENST00000531816.1:ENST00000531993.6:ENST00000490541.6:ENST00000372362.6:ENST00000531451.5:ENST00000645117.1:ENST00000533933.6:ENST00000332628.11:ENST00000643813.1:ENST00000644922.1:ENST00000644287.1:ENST00000647503.1:ENST00000461375.2:ENST00000642780.1:ENST00000644645.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	25	2	4.1054	4.222195	4.33899	0.0220205	0.0206616	0.123836	0.110999
chr1	150675042	150675142	551683	0	-	0.47	(0.44,0.476]	chr1	64826	109	INTRON	INTRON	GOLPH3L	ENSG00000143457.11	ENST00000271732.8:ENST00000427665.1	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	4.1054	4.222195	4.33899	0.0220205	0.0206616	0.123836	0.110999
chr10	27146459	27146555	4586210	0	-	0.447917	(0.44,0.476]	chr10	422770	10	UTR3	UTR3:EXON_MRNA:INTRON	YME1L1	ENSG00000136758.20	ENST00000376016.8:ENST00000613434.4:ENST00000326799.7:ENST00000491542.6:ENST00000427324.5:ENST00000396296.7:ENST00000477432.1	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	4.1054	4.222195	4.33899	0.0220205	0.0206616	0.123836	0.110999
chr10	118727155	118727252	4704138	0	-	0.463918	(0.44,0.476]	chr10	433886	9	INTRON	INTRON	CACUL1	ENSG00000151893.15	ENST00000369151.8:ENST00000493518.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	25	2	4.1054	4.222195	4.33899	0.0220205	0.0206616	0.123836	0.110999
chr10	121965885	121965982	4709951	0	-	0.443299	(0.44,0.476]	chr10	434593	1	INTRON	INTRON	NSMCE4A	ENSG00000107672.15	ENST00000369023.8:ENST00000489266.5:ENST00000468209.5:ENST00000369017.5:ENST00000464321.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	25	2	4.1054	4.222195	4.33899	0.0220205	0.0206616	0.123836	0.110999
chr14	91034135	91034234	5953636	0	-	0.444444	(0.44,0.476]	chr14	565172	326	INTRON	INTRON	RPS6KA5	ENSG00000100784.12	ENST00000614987.5:ENST00000648062.1:ENST00000536315.6:ENST00000418736.6:ENST00000554206.1:ENST00000556594.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	25	2	4.1054	4.222195	4.33899	0.0220205	0.0206616	0.123836	0.110999
chr16	74925894	74925993	6526690	0	-	0.454545	(0.44,0.476]	chr16	632100	15	INTRON	INTRON	WDR59	ENSG00000103091.15	ENST00000262144.11:ENST00000616369.4:ENST00000569549.5:ENST00000536050.5:ENST00000568462.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	25	2	4.1054	4.222195	4.33899	0.0220205	0.0206616	0.123836	0.110999
chr19	32461381	32461480	7049334	0	+	0.474747	(0.44,0.476]	chr19	702869	25	INTRON	INTRON	DPY19L3	ENSG00000178904.19	ENST00000392250.7:ENST00000586987.5:ENST00000342179.9:ENST00000585597.5:ENST00000588648.7:ENST00000592142.5:ENST00000592832.2:ENST00000590651.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	25	2	4.1054	4.222195	4.33899	0.0220205	0.0206616	0.123836	0.110999
chr2	112512181	112512281	851285	0	+	0.46	(0.44,0.476]	chr2	95401	86	INTRON	INTRON	TTL	ENSG00000114999.8	ENST00000233336.7:ENST00000476615.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	25	2	4.1054	4.222195	4.33899	0.0220205	0.0206616	0.123836	0.110999
chr21	42997034	42997134	7411764	0	+	0.47	(0.44,0.476]	chr21	755317	220	INTRON	INTRON	PKNOX1	ENSG00000160199.15	ENST00000432907.6:ENST00000418336.6:ENST00000291547.10:ENST00000480179.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	25	2	4.1054	4.222195	4.33899	0.0220205	0.0206616	0.123836	0.110999
chr3	67650709	67650808	1733913	0	-	0.454545	(0.44,0.476]	chr3	176602	408	INTRON	INTRON	SUCLG2	ENSG00000172340.15	ENST00000493112.5:ENST00000307227.10:ENST00000492795.1	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	4.1054	4.222195	4.33899	0.0220205	0.0206616	0.123836	0.110999
chr6	44899634	44899734	3099190	0	-	0.45	(0.44,0.476]	chr6	290418	694	INTRON	INTRON	SUPT3H	ENSG00000196284.17	ENST00000475057.5:ENST00000371459.6:ENST00000674231.1:ENST00000371460.5:ENST00000371458.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	25	2	4.1054	4.222195	4.33899	0.0220205	0.0206616	0.123836	0.110999
chr8	8855793	8855893	3907231	0	-	0.47	(0.44,0.476]	chr8	358041	338	INTRON	INTRON	MFHAS1	ENSG00000147324.11	ENST00000276282.7:ENST00000521881.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	25	2	4.1054	4.222195	4.33899	0.0220205	0.0206616	0.123836	0.110999
chr8	38950152	38950250	3738030	0	+	0.44898	(0.44,0.476]	chr8	347409	36	INTRON	INTRON	PLEKHA2	ENSG00000169499.15	ENST00000521746.5:ENST00000616927.4:ENST00000617275.5:ENST00000616834.1	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	4.1054	4.222195	4.33899	0.0220205	0.0206616	0.123836	0.110999
chr8	41607627	41607726	3742521	0	+	0.454545	(0.44,0.476]	chr8	347932	80	INTRON	INTRON	GPAT4	ENSG00000158669.11	ENST00000396987.7:ENST00000519853.5:ENST00000521806.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	25	2	4.1054	4.222195	4.33899	0.0220205	0.0206616	0.123836	0.110999
chr8	54138916	54139014	3753690	0	+	0.459184	(0.44,0.476]	chr8	349157	11	INTRON	INTRON	MRPL15	ENSG00000137547.9	ENST00000260102.9:ENST00000519831.5:ENST00000522521.2	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	4.1054	4.222195	4.33899	0.0220205	0.0206616	0.123836	0.110999
chrX	53399188	53399288	7819943	0	-	0.46	(0.44,0.476]	chrX	797704	2	SS5_PROX	SS5_PROX:INTRON	SMC1A	ENSG00000072501.19	ENST00000375340.10:ENST00000322213.9:ENST00000675504.1:ENST00000674590.1	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	4.1054	4.222195	4.33899	0.0220205	0.0206616	0.123836	0.110999
chr3	138808943	138809043	1831242	0	-	0.45	(0.44,0.476]	chr3	184062	120	INTRON	INTRON	PIK3CB	ENSG00000051382.9	ENST00000674063.1:ENST00000477593.5:ENST00000462898.5:ENST00000483968.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	85	2	2.90991	4.22215	5.53439	4.05863e-4	3.20441e-4	0.0185763	0.0159645
chr11	63858801	63858901	4801068	0	+	0.48	(0.476,0.515]	chr11	445036	84	INTRON	INTRON	MARK2	ENSG00000072518.22	ENST00000377810.8:ENST00000361128.9:ENST00000508192.5:ENST00000350490.11:ENST00000402010.8:ENST00000502399.7:ENST00000425897.3:ENST00000679216.1:ENST00000513765.7:ENST00000543220.5	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	3.83018	4.2221	4.61402	0.0423385	0.00947755	0.161744	0.0817766
chr12	118120137	118120235	5427863	0	-	0.5	(0.476,0.515]	chr12	518594	19	INTRON	INTRON	VSIG10	ENSG00000176834.14	ENST00000542011.1:ENST00000321694.5:ENST00000539956.1	protein_coding	processed_transcript	protein_coding	processed_transcript	0	26	2	3.83018	4.2221	4.61402	0.0423385	0.00947755	0.161744	0.0817766
chr15	40784141	40784241	6151581	0	-	0.48	(0.476,0.515]	chr15	585210	34	INTRON	INTRON	DNAJC17	ENSG00000104129.10	ENST00000220496.9:ENST00000559238.5:ENST00000560645.5:ENST00000560065.6:ENST00000561018.5:ENST00000559310.3:ENST00000560301.5:ENST00000627802.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	26	2	3.83018	4.2221	4.61402	0.0423385	0.00947755	0.161744	0.0817766
chr19	5071159	5071259	7004447	0	+	0.51	(0.476,0.515]	chr19	694840	1	SS5_PROX	SS5_PROX:INTRON	KDM4B	ENSG00000127663.15	ENST00000159111.9:ENST00000611640.4:ENST00000381759.8:ENST00000536461.5:ENST00000592175.5:ENST00000589104.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	26	2	3.83018	4.2221	4.61402	0.0423385	0.00947755	0.161744	0.0817766
chr3	150747881	150747981	1841846	0	-	0.48	(0.476,0.515]	chr3	185277	48	INTRON	INTRON	SIAH2	ENSG00000181788.4	ENST00000312960.4:ENST00000482706.1	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	3.83018	4.2221	4.61402	0.0423385	0.00947755	0.161744	0.0817766
chr4	25336480	25336579	1933602	0	+	0.50505	(0.476,0.515]	chr4	194129	21	INTRON	INTRON	ZCCHC4	ENSG00000168228.16	ENST00000302874.9:ENST00000505451.5:ENST00000507760.5:ENST00000505412.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	26	2	3.83018	4.2221	4.61402	0.0423385	0.00947755	0.161744	0.0817766
chr6	98924484	98924583	3165350	0	-	0.515152	(0.476,0.515]	chr6	295205	64	INTRON	INTRON	FBXL4	ENSG00000112234.9	ENST00000369244.7:ENST00000229971.2	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	3.83018	4.2221	4.61402	0.0423385	0.00947755	0.161744	0.0817766
chrX	131731313	131731413	7891989	0	-	0.49	(0.476,0.515]	chrX	803396	192	INTRON	INTRON	FIRRE	ENSG00000213468.7	ENST00000649541.1:ENST00000662867.1:ENST00000663405.1:ENST00000665076.1:ENST00000637577.2:ENST00000654978.1:ENST00000647966.1:ENST00000649391.1:ENST00000648028.2:ENST00000427391.2	lncRNA	lncRNA	lncRNA	lncRNA	0	26	2	3.83018	4.2221	4.61402	0.0423385	0.00947755	0.161744	0.0817766
chr6	75625450	75625549	2905182	0	+	0.343434	(0.32,0.35]	chr6	274500	11	INTRON	INTRON	SENP6	ENSG00000112701.18	ENST00000370010.6:ENST00000447266.7:ENST00000327284.12:ENST00000493959.6:ENST00000483859.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	76	2	2.89475	4.2220949999999995	5.54944	0.00160352	9.42646e-4	0.0367961	0.0280811
chr3	158117902	158118002	1538352	0	+	0.4	(0.378,0.408]	chr3	160248	69	INTRON	INTRON	RSRC1	ENSG00000174891.14	ENST00000480820.5:ENST00000494002.5:ENST00000295930.7:ENST00000471994.5:ENST00000683733.1:ENST00000682221.1:ENST00000683831.1:ENST00000683516.1:ENST00000482822.3:ENST00000476899.6:ENST00000464171.5:ENST00000611884.5:ENST00000682164.1:ENST00000684604.1:ENST00000683899.1:ENST00000682500.1:ENST00000684683.1:ENST00000684512.1:ENST00000683394.1:ENST00000684156.1:ENST00000312179.10:ENST00000475278.6:ENST00000480119.5:ENST00000468344.5:ENST00000471911.5:ENST00000683137.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	53	2	3.3797	4.22191	5.06412	0.0030522	0.00154501	0.0493883	0.0362716
chr1	1742469	1742568	361405	0	-	0.424242	(0.408,0.44]	chr1	42138	24	INTRON	INTRON	SLC35E2A	ENSG00000215790.8	ENST00000647043.1:ENST00000246421.4	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	1	52	2	3.36378	4.221805	5.07983	0.00247652	0.0016048	0.0446195	0.0367961
chr15	44463986	44464086	6014716	0	+	0.44	(0.408,0.44]	chr15	572922	44	INTRON	INTRON	CTDSPL2	ENSG00000137770.14	ENST00000558791.5:ENST00000260327.9:ENST00000560834.1:ENST00000558966.5:ENST00000559793.5:ENST00000558968.1:ENST00000558373.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	52	2	3.36378	4.221805	5.07983	0.00247652	0.0016048	0.0446195	0.0367961
chr11	68607876	68607976	4818838	0	+	0.42	(0.408,0.44]	chr11	449062	40	INTRON	INTRON	PPP6R3	ENSG00000110075.15	ENST00000534534.5:ENST00000524845.5:ENST00000393800.7:ENST00000265637.8:ENST00000524904.5:ENST00000393801.7:ENST00000265636.9:ENST00000529710.5:ENST00000527403.6:ENST00000534190.5:ENST00000526307.5:ENST00000526593.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	75	2	2.57295	4.22171	5.87047	0.00640423	2.24671e-5	0.0694534	0.0036973
chr1	10062243	10062343	19419	0	+	0.25	[0,0.28]	chr1	1838	282	INTRON	INTRON	UBE4B	ENSG00000130939.20	ENST00000672724.1:ENST00000253251.12:ENST00000343090.11:ENST00000377153.5	protein_coding	protein_coding	protein_coding	protein_coding	1	64	2	3.05114	4.22168	5.39222	0.0075493	0.00453865	0.0773151	0.0595107
chr1	40380190	40380290	81508	0	+	0.39	(0.378,0.408]	chr1	10553	51	INTRON	INTRON	SMAP2	ENSG00000084070.12	ENST00000435168.6:ENST00000372718.8:ENST00000372708.5	protein_coding	protein_coding	protein_coding	protein_coding	1	53	2	3.1136	4.22164	5.32968	0.00443339	0.00119786	0.061054	0.0315806
chr6	107952385	107952485	3182789	0	-	0.37	(0.35,0.378]	chr6	296463	225	INTRON	INTRON	SEC63	ENSG00000025796.14	ENST00000369002.9:ENST00000429168.1:ENST00000484803.5:ENST00000446496.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	73	2	2.67874	4.22162	5.7645	0.00373022	2.7432e-4	0.0561984	0.0151711
chr15	87387810	87387910	6253425	0	-	0.41	(0.408,0.44]	chr15	596790	606	INTRON	INTRON	ENSG00000259560	ENSG00000259560.2	ENST00000665121.1:ENST00000656130.1	lncRNA	lncRNA	lncRNA	lncRNA	1	52	2	3.14706	4.22159	5.29612	0.00382411	0.00113523	0.0562562	0.0307488
chr1	44639699	44639797	92170	0	+	0.346939	(0.32,0.35]	chr1	12216	9	INTRON	INTRON	RNF220	ENSG00000187147.18	ENST00000355387.6:ENST00000361799.7:ENST00000372247.6:ENST00000440132.2:ENST00000335497.11:ENST00000474064.5:ENST00000471494.5:ENST00000497469.5:ENST00000475378.5:ENST00000484745.5:ENST00000474394.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	26	2	4.17181	4.22147	4.27113	0.04531	0.0199982	0.149888	0.120668
chr1	93347761	93347860	164215	0	+	0.333333	(0.32,0.35]	chr1	17840	5	INTRON	INTRON	DR1	ENSG00000117505.13	ENST00000370272.9:ENST00000370267.1	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.17181	4.22147	4.27113	0.04531	0.0199982	0.149888	0.120668
chr15	63721685	63721785	6199756	0	-	0.35	(0.32,0.35]	chr15	591330	24	INTRON	INTRON	HERC1	ENSG00000103657.14	ENST00000443617.7:ENST00000561400.1:ENST00000560983.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	26	2	4.17181	4.22147	4.27113	0.04531	0.0199982	0.149888	0.120668
chr16	46590866	46590965	6477806	0	-	0.333333	(0.32,0.35]	chr16	626567	64	INTRON	INTRON	SHCBP1	ENSG00000171241.9	ENST00000303383.8	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.17181	4.22147	4.27113	0.04531	0.0199982	0.149888	0.120668
chr16	84763985	84764085	6410563	0	+	0.35	(0.32,0.35]	chr16	615330	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	USP10	ENSG00000103194.16	ENST00000540269.6:ENST00000219473.12:ENST00000570191.5:ENST00000563048.5:ENST00000569038.5:ENST00000570053.1:ENST00000563433.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	26	2	4.17181	4.22147	4.27113	0.04531	0.0199982	0.149888	0.120668
chr5	43505648	43505747	2615045	0	-	0.333333	(0.32,0.35]	chr5	248626	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	C5orf34	ENSG00000172244.9	ENST00000306862.7:ENST00000503655.2:ENST00000509489.1:ENST00000514462.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	26	2	4.17181	4.22147	4.27113	0.04531	0.0199982	0.149888	0.120668
chr5	70945565	70945665	2383478	0	+	0.35	(0.32,0.35]	chr5	229825	1	SS3_PROX	SS3_PROX:INTRON	SMN1	ENSG00000172062.17	ENST00000503079.6:ENST00000514951.5:ENST00000506239.6:ENST00000380707.9:ENST00000506163.5:ENST00000351205.8:ENST00000625245.2:ENST00000518504.5:ENST00000507905.6:ENST00000513228.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	26	2	4.17181	4.22147	4.27113	0.04531	0.0199982	0.149888	0.120668
chr6	106247649	106247749	3177378	0	-	0.33	(0.32,0.35]	chr6	296170	1	SS5_PROX	SS5_PROX:INTRON	ATG5	ENSG00000057663.16	ENST00000636437.1:ENST00000636335.1:ENST00000369070.5:ENST00000369076.8:ENST00000635758.2:ENST00000360666.6:ENST00000343245.7:ENST00000646025.1:ENST00000613993.1:ENST00000476518.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	26	2	4.17181	4.22147	4.27113	0.04531	0.0199982	0.149888	0.120668
chrX	11312355	11312455	7760476	0	-	0.34	(0.32,0.35]	chrX	793516	215	INTRON	INTRON	ARHGAP6	ENSG00000047648.23	ENST00000380736.5:ENST00000337414.9:ENST00000495242.5:ENST00000489330.6:ENST00000380718.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	26	2	4.17181	4.22147	4.27113	0.04531	0.0199982	0.149888	0.120668
chrX	70304990	70305090	7675459	0	+	0.35	(0.32,0.35]	chrX	785595	22	INTRON	INTRON	KIF4A	ENSG00000090889.12	ENST00000374403.4	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.17181	4.22147	4.27113	0.04531	0.0199982	0.149888	0.120668
chr5	28826443	28826543	2330014	0	+	0.33	(0.32,0.35]	chr5	225135	159	INTRON	INTRON	LINC02109	ENSG00000259786.7	ENST00000658190.1	lncRNA	lncRNA	lncRNA	lncRNA	4	105	2	2.15243	4.221325	6.29022	0.0057293	4.1166e-5	0.0681402	0.00544123
chr7	158902893	158902993	3456602	0	+	0.57	(0.515,0.57]	chr7	323187	4	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	DYNC2I1	ENSG00000126870.16	ENST00000407559.8:ENST00000444851.5:ENST00000467220.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	180	2	3.23409	4.221325	5.20856	1.62281e-5	1.19648e-8	0.00324499	3.76631e-5
chr6	42208090	42208189	3095348	0	-	0.424242	(0.408,0.44]	chr6	289537	14	UTR3	UTR3:EXON_MRNA	MRPS10	ENSG00000048544.6	ENST00000053468.4	protein_coding	protein_coding	protein_coding	protein_coding	2	115	2	3.90547	4.221285	4.5371	2.03612e-4	2.94395e-6	0.0129859	0.0011002
chr6	7611168	7611268	2800349	0	+	0.47	(0.44,0.476]	chr6	263947	24	UTR3	UTR3:EXON_MRNA	SNRNP48	ENSG00000168566.13	ENST00000342415.6	protein_coding	protein_coding	protein_coding	protein_coding	2	79	2	3.14512	4.221175	5.29723	5.78837e-4	3.83422e-4	0.0223209	0.017699199999999998
chrX	118504963	118505063	7708263	0	+	0.45	(0.44,0.476]	chrX	788656	85	INTRON	INTRON	DOCK11	ENSG00000147251.16	ENST00000276202.9:ENST00000276204.10	protein_coding	protein_coding	protein_coding	protein_coding	1	59	2	2.5364	4.22111	5.90582	0.0309324	1.86259e-5	0.13151	0.00329969
chr1	42833465	42833563	84468	0	+	0.346939	(0.32,0.35]	chr1	11106	20	INTRON	INTRON	ERMAP	ENSG00000164010.15	ENST00000372517.8:ENST00000647120.1:ENST00000487556.6:ENST00000642150.1:ENST00000372514.7:ENST00000328249.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	83	2	2.53107	4.22077	5.91047	0.00860484	4.45216e-5	0.0784134	0.00541025
chr3	45734959	45735051	1417514	0	+	0.380435	(0.378,0.408]	chr3	148731	5	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	SACM1L	ENSG00000211456.13	ENST00000455997.5:ENST00000418611.5:ENST00000672477.1:ENST00000441228.5:ENST00000389061.10:ENST00000672858.2:ENST00000433336.1:ENST00000464102.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	85	2	2.73003	4.22057	5.71111	8.35208e-4	2.59738e-4	0.0263691	0.0148796
chr22	47952396	47952496	7542595	0	+	0.4	(0.378,0.408]	chr22	770815	46	INTRON	INTRON	ENSG00000224271	ENSG00000224271.7	ENST00000664761.1:ENST00000651445.1:ENST00000651403.1:ENST00000652228.1:ENST00000651033.1	lncRNA	lncRNA	lncRNA	lncRNA	1	57	2	3.10274	4.220515	5.33829	0.00586642	3.59275e-4	0.0668095	0.0169207
chr5	146251210	146251310	2514598	0	+	0.39	(0.378,0.408]	chr5	240195	1	SS3_PROX	SS3_PROX:INTRON	ENSG00000275740:RBM27	ENSG00000275740.1:ENSG00000091009.8	ENST00000506502.2:ENST00000265271.7	protein_coding	protein_coding	protein_coding	protein_coding	1	57	2	3.10274	4.220515	5.33829	0.00586642	3.59275e-4	0.0668095	0.0169207
chr1	151309616	151309710	553983	0	-	0.446809	(0.44,0.476]	chr1	65324	15	INTRON	INTRON	PI4KB	ENSG00000143393.17	ENST00000368874.8:ENST00000368873.6:ENST00000368875.6:ENST00000529142.5:ENST00000368872.5:ENST00000430800.5:ENST00000489223.2	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	3.8344	4.220435	4.60647	0.041276	0.0102339	0.161534	0.0850389
chr1	174287647	174287747	258402	0	+	0.46	(0.44,0.476]	chr1	30796	85	INTRON	INTRON	RABGAP1L	ENSG00000152061.24	ENST00000357444.10:ENST00000251507.8:ENST00000681986.1:ENST00000457696.1:ENST00000367690.5	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	3.8344	4.220435	4.60647	0.041276	0.0102339	0.161534	0.0850389
chr10	132542967	132543067	4537730	0	+	0.45	(0.44,0.476]	chr10	418936	44	INTRON	INTRON	INPP5A	ENSG00000068383.19	ENST00000368594.8:ENST00000368593.7:ENST00000423490.5	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	3.8344	4.220435	4.60647	0.041276	0.0102339	0.161534	0.0850389
chr2	168833327	168833427	905841	0	+	0.46	(0.44,0.476]	chr2	99885	14	INTRON	INTRON	NOSTRIN	ENSG00000163072.16	ENST00000458381.6:ENST00000444448.6:ENST00000445023.6:ENST00000397206.6:ENST00000317647.12:ENST00000397209.6:ENST00000447264.2	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	3.8344	4.220435	4.60647	0.041276	0.0102339	0.161534	0.0850389
chr20	317941	318039	7302519	0	-	0.44898	(0.44,0.476]	chr20	743412	12	EXON_LNCRNA	EXON_LNCRNA	NRSN2-AS1	ENSG00000225377.6	ENST00000657126.1	lncRNA	lncRNA	lncRNA	lncRNA	0	26	2	3.8344	4.220435	4.60647	0.041276	0.0102339	0.161534	0.0850389
chr20	50530778	50530878	7286118	0	+	0.46	(0.44,0.476]	chr20	741241	198	INTRON	INTRON	PTPN1	ENSG00000196396.10	ENST00000541713.5:ENST00000371621.5	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	3.8344	4.220435	4.60647	0.041276	0.0102339	0.161534	0.0850389
chr3	50026310	50026410	1423823	0	+	0.47	(0.44,0.476]	chr3	149994	264	INTRON	INTRON	RBM6	ENSG00000004534.15	ENST00000442092.5:ENST00000443081.5:ENST00000419610.5:ENST00000441115.5:ENST00000422955.5:ENST00000454079.5:ENST00000266022.9:ENST00000425608.5:ENST00000434592.5:ENST00000464013.5:ENST00000483350.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	26	2	3.8344	4.220435	4.60647	0.041276	0.0102339	0.161534	0.0850389
chr9	105723620	105723719	4182835	0	+	0.454545	(0.44,0.476]	chr9	381513	6	INTRON	INTRON	TMEM38B	ENSG00000095209.12	ENST00000374692.8:ENST00000374688.5:ENST00000435034.5:ENST00000451560.1	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	3.8344	4.220435	4.60647	0.041276	0.0102339	0.161534	0.0850389
chr16	74952239	74952337	6526959	0	-	0.44898	(0.44,0.476]	chr16	632136	3	INTRON	INTRON	WDR59	ENSG00000103091.15	ENST00000262144.11:ENST00000616369.4:ENST00000536050.5:ENST00000568462.5:ENST00000568323.5:ENST00000563111.2:ENST00000562331.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	70	2	2.59888	4.220175	5.84147	0.00487719	1.03947e-4	0.0640618	0.00915599
chr22	20119339	20119434	7478607	0	+	0.589474	(0.57,1]	chr22	762783	3	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	RANBP1	ENSG00000099901.17	ENST00000435265.5:ENST00000432879.5:ENST00000430524.6:ENST00000402752.5:ENST00000488484.1:ENST00000331821.7:ENST00000411892.5:ENST00000467920.1:ENST00000416427.5:ENST00000421656.5:ENST00000423859.5:ENST00000418705.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	135	2	4.09372	4.2201699999999995	4.34662	3.50951e-7	2.18238e-9	3.00241e-4	8.96165e-6
chr5	131537903	131538003	2718195	0	-	0.45	(0.44,0.476]	chr5	255596	50	INTRON	INTRON	RAPGEF6	ENSG00000158987.22	ENST00000509018.6:ENST00000507093.5:ENST00000296859.10:ENST00000627212.2:ENST00000308008.10:ENST00000515170.5:ENST00000510071.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	55	2	2.74372	4.2199	5.69608	0.0153007	2.01872e-4	0.108569	0.0129814
chr1	113756013	113756111	525392	0	-	0.438776	(0.408,0.44]	chr1	61809	61	INTRON	INTRON	PHTF1	ENSG00000116793.16	ENST00000369604.6:ENST00000393357.6:ENST00000369600.5:ENST00000369598.5:ENST00000357783.6:ENST00000446739.1:ENST00000493212.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	25	2	4.00385	4.219825	4.4358	0.0454568	0.00893097	0.149888	0.0849778
chr1	236851222	236851322	343071	0	+	0.41	(0.408,0.44]	chr1	39910	3	INTRON	INTRON	MTR	ENSG00000116984.15	ENST00000680454.1:ENST00000366577.10:ENST00000674797.2:ENST00000679569.1:ENST00000650888.1:ENST00000463959.1:ENST00000535889.6:ENST00000651455.1:ENST00000681102.1:ENST00000679842.1:ENST00000681177.1:ENST00000681937.1:ENST00000366576.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	25	2	4.00385	4.219825	4.4358	0.0454568	0.00893097	0.149888	0.0849778
chr11	117988686	117988771	4871047	0	+	0.411765	(0.408,0.44]	chr11	454744	2	SS5_PROX	SS5_PROX:INTRON	IL10RA	ENSG00000110324.12	ENST00000530761.5:ENST00000533700.5:ENST00000227752.8:ENST00000696732.1:ENST00000534574.5:ENST00000526544.5:ENST00000525467.2:ENST00000531365.1:ENST00000529924.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	25	2	4.00385	4.219825	4.4358	0.0454568	0.00893097	0.149888	0.0849778
chr12	50772299	50772398	5139724	0	+	0.424242	(0.408,0.44]	chr12	484698	73	INTRON	INTRON	ATF1	ENSG00000123268.9	ENST00000552510.5:ENST00000549612.5:ENST00000262053.8:ENST00000551831.5:ENST00000552487.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	25	2	4.00385	4.219825	4.4358	0.0454568	0.00893097	0.149888	0.0849778
chr14	73079820	73079919	5784297	0	+	0.414141	(0.408,0.44]	chr14	547839	19	INTRON	INTRON	RBM25	ENSG00000119707.14	ENST00000527432.5:ENST00000531500.5:ENST00000261973.12:ENST00000532683.5:ENST00000525321.5:ENST00000526754.5:ENST00000525161.5:ENST00000528081.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	25	2	4.00385	4.219825	4.4358	0.0454568	0.00893097	0.149888	0.0849778
chr14	102191571	102191671	5821804	0	+	0.41	(0.408,0.44]	chr14	552352	2	SS5_PROX	SS5_PROX:INTRON	WDR20	ENSG00000140153.18	ENST00000557485.5:ENST00000335263.9:ENST00000424963.6:ENST00000322340.9:ENST00000556807.1:ENST00000555879.5:ENST00000342702.8:ENST00000558567.5:ENST00000299135.6:ENST00000454394.2:ENST00000556094.1:ENST00000556511.2:ENST00000557186.5:ENST00000558854.5:ENST00000559708.5:ENST00000558135.5:ENST00000558448.5:ENST00000555973.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	25	2	4.00385	4.219825	4.4358	0.0454568	0.00893097	0.149888	0.0849778
chr16	12049313	12049410	6292050	0	+	0.412371	(0.408,0.44]	chr16	602399	3	INTRON	INTRON	SNX29	ENSG00000048471.14	ENST00000566228.6:ENST00000564111.5:ENST00000568359.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	25	2	4.00385	4.219825	4.4358	0.0454568	0.00893097	0.149888	0.0849778
chr2	101165762	101165862	1198288	0	-	0.43	(0.408,0.44]	chr2	128111	145	INTRON	INTRON	TBC1D8	ENSG00000204634.13	ENST00000463469.5	protein_coding	processed_transcript	protein_coding	processed_transcript	0	25	2	4.00385	4.219825	4.4358	0.0454568	0.00893097	0.149888	0.0849778
chr20	38506291	38506390	7270224	0	+	0.434343	(0.408,0.44]	chr20	738776	63	INTRON	INTRON	RALGAPB	ENSG00000170471.15	ENST00000397042.7:ENST00000262879.11:ENST00000397040.5:ENST00000438490.2	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	4.00385	4.219825	4.4358	0.0454568	0.00893097	0.149888	0.0849778
chr3	23809685	23809780	1387763	0	+	0.421053	(0.408,0.44]	chr3	145373	10	INTRON	INTRON	UBE2E1	ENSG00000170142.12	ENST00000306627.8:ENST00000346855.7:ENST00000495141.5:ENST00000442670.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	25	2	4.00385	4.219825	4.4358	0.0454568	0.00893097	0.149888	0.0849778
chr3	33698231	33698331	1653811	0	-	0.43	(0.408,0.44]	chr3	169693	9	INTRON	INTRON	CLASP2	ENSG00000163539.18	ENST00000399362.8:ENST00000682230.1:ENST00000468888.6:ENST00000359576.9:ENST00000467956.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	25	2	4.00385	4.219825	4.4358	0.0454568	0.00893097	0.149888	0.0849778
chr4	89044042	89044142	2202837	0	-	0.41	(0.408,0.44]	chr4	216016	140	INTRON	INTRON	FAM13A	ENSG00000138640.15	ENST00000264344.10:ENST00000511976.5:ENST00000502459.5:ENST00000512339.5:ENST00000509094.5:ENST00000515600.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	25	2	4.00385	4.219825	4.4358	0.0454568	0.00893097	0.149888	0.0849778
chr9	33994480	33994576	4245296	0	-	0.4375	(0.408,0.44]	chr9	390464	1	EXON_MRNA	EXON_MRNA:INTRON	UBAP2	ENSG00000137073.24	ENST00000379238.7:ENST00000683659.1:ENST00000682239.1:ENST00000683140.1:ENST00000682209.1:ENST00000681980.1:ENST00000360802.6:ENST00000683252.1:ENST00000684158.1:ENST00000682914.1:ENST00000683717.1:ENST00000379239.9:ENST00000683084.1:ENST00000684754.1:ENST00000629575.2:ENST00000684298.1:ENST00000412543.6:ENST00000480885.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	25	2	4.00385	4.219825	4.4358	0.0454568	0.00893097	0.149888	0.0849778
chr9	98811566	98811665	4173690	0	+	0.414141	(0.408,0.44]	chr9	380354	31	INTRON	INTRON	GALNT12	ENSG00000119514.7	ENST00000375011.4:ENST00000610463.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	25	2	4.00385	4.219825	4.4358	0.0454568	0.00893097	0.149888	0.0849778
chr1	246326563	246326631	678905	0	-	0.382353	(0.378,0.408]	chr1	79747	2	SS3_PROX	SS3_PROX:INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000453676.5:ENST00000462422.5:ENST00000403792.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	129	2	1.99288	4.219725	6.44657	0.00540773	8.73804e-7	0.0644789	5.30397e-4
chr13	25305231	25305329	5457200	0	+	0.469388	(0.44,0.476]	chr13	522871	17	INTRON	INTRON	NUP58	ENSG00000139496.17	ENST00000481980.2:ENST00000490231.6:ENST00000695571.1:ENST00000477876.2:ENST00000695572.1:ENST00000463407.6:ENST00000695573.1:ENST00000381736.8:ENST00000695583.1:ENST00000465068.5:ENST00000460326.5:ENST00000480187.5:ENST00000466694.6:ENST00000381718.8:ENST00000695575.1:ENST00000695574.1:ENST00000495460.2:ENST00000381747.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	69	2	2.9044	4.2193950000000005	5.53439	0.00132926	4.05863e-4	0.0335085	0.0185763
chr11	9144725	9144815	4907836	0	-	0.444444	(0.44,0.476]	chr11	460001	6	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DENND5A	ENSG00000184014.9	ENST00000328194.8:ENST00000529977.5:ENST00000681203.1:ENST00000530780.2:ENST00000680358.1:ENST00000679999.1:ENST00000679458.1:ENST00000531747.2:ENST00000680470.1:ENST00000680599.1:ENST00000680554.1:ENST00000679745.1:ENST00000679926.1:ENST00000679773.1:ENST00000680252.1:ENST00000525784.6:ENST00000681425.1:ENST00000681158.1:ENST00000679460.1:ENST00000681371.1:ENST00000680791.1:ENST00000679568.1:ENST00000679446.1:ENST00000681639.1:ENST00000680294.1:ENST00000680742.1:ENST00000680885.1:ENST00000680576.1:ENST00000530044.5:ENST00000527700.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	75	2	2.42996	4.219215	6.00847	0.0104804	1.04381e-5	0.0855777	0.00235341
chr12	57416758	57416858	5339116	0	-	0.58	(0.57,1]	chr12	510716	206	INTRON	INTRON	R3HDM2	ENSG00000179912.21	ENST00000402412.6:ENST00000347140.7:ENST00000634871.1:ENST00000448732.1	protein_coding	protein_coding	protein_coding	protein_coding	3	54	2	2.7621000000000002	4.219215	5.67633	5.29607e-4	4.81335e-6	0.0207276	0.00161664
chr4	153497982	153498082	2067568	0	+	0.39	(0.378,0.408]	chr4	204567	237	INTRON	INTRON	TMEM131L	ENSG00000121210.16	ENST00000409663.7:ENST00000445960.5:ENST00000409959.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	54	2	2.92665	4.219195	5.51174	0.0086017	5.93655e-4	0.083729	0.0225024
chr1	108764477	108764577	178429	0	+	0.42	(0.408,0.44]	chr1	19407	40	INTRON	INTRON	STXBP3	ENSG00000116266.11	ENST00000370008.4:ENST00000486601.5:ENST00000485167.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	25	2	4.10594	4.2191600000000005	4.33238	0.0219367	0.0218901	0.123836	0.11491
chr11	28258841	28258941	4753671	0	+	0.42	(0.408,0.44]	chr11	440121	473	INTRON	INTRON	METTL15	ENSG00000169519.21	ENST00000406787.7:ENST00000451385.6:ENST00000407364.8:ENST00000532947.2:ENST00000634627.1:ENST00000634973.1:ENST00000303459.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	25	2	4.10594	4.2191600000000005	4.33238	0.0219367	0.0218901	0.123836	0.11491
chr11	130142574	130142664	4886465	0	+	0.422222	(0.408,0.44]	chr11	457023	1	INTRON	INTRON	APLP2	ENSG00000084234.18	ENST00000650012.1:ENST00000533616.5:ENST00000338167.10:ENST00000528499.5:ENST00000263574.9:ENST00000345598.9:ENST00000278756.7:ENST00000533860.5:ENST00000530493.1:ENST00000525604.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	25	2	4.10594	4.2191600000000005	4.33238	0.0219367	0.0218901	0.123836	0.11491
chr12	116073078	116073178	5423497	0	-	0.42	(0.408,0.44]	chr12	518245	501	INTRON	INTRON	MED13L	ENSG00000123066.9	ENST00000281928.9:ENST00000650226.1:ENST00000648737.1:ENST00000548743.2:ENST00000647567.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	25	2	4.10594	4.2191600000000005	4.33238	0.0219367	0.0218901	0.123836	0.11491
chr14	55172571	55172670	5900312	0	-	0.414141	(0.408,0.44]	chr14	560435	14	INTRON	INTRON	DLGAP5	ENSG00000126787.13	ENST00000395425.6:ENST00000247191.7	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	4.10594	4.2191600000000005	4.33238	0.0219367	0.0218901	0.123836	0.11491
chr16	75002870	75002969	6389457	0	+	0.414141	(0.408,0.44]	chr16	614482	1	INTRON	INTRON	ZNRF1	ENSG00000186187.12	ENST00000335325.9:ENST00000320619.10:ENST00000567962.5:ENST00000566250.5:ENST00000564320.1:ENST00000568511.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	25	2	4.10594	4.2191600000000005	4.33238	0.0219367	0.0218901	0.123836	0.11491
chr17	18999244	18999343	6740788	0	-	0.434343	(0.408,0.44]	chr17	661744	105	INTRON	INTRON	FAM83G	ENSG00000188522.15	ENST00000388995.11:ENST00000345041.4:ENST00000399096.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	25	2	4.10594	4.2191600000000005	4.33238	0.0219367	0.0218901	0.123836	0.11491
chr18	2926133	2926222	6944211	0	-	0.41573	(0.408,0.44]	chr18	686752	4	INTRON	INTRON	LPIN2	ENSG00000101577.10	ENST00000261596.8:ENST00000677752.1	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	4.10594	4.2191600000000005	4.33238	0.0219367	0.0218901	0.123836	0.11491
chr18	2929857	2929957	6944253	0	-	0.41	(0.408,0.44]	chr18	686774	3	INTRON	INTRON	LPIN2	ENSG00000101577.10	ENST00000261596.8:ENST00000677752.1	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	4.10594	4.2191600000000005	4.33238	0.0219367	0.0218901	0.123836	0.11491
chr19	7404934	7405034	7008458	0	+	0.43	(0.408,0.44]	chr19	695533	93	INTRON	INTRON	ARHGEF18	ENSG00000104880.19	ENST00000668164.2:ENST00000319670.14:ENST00000594665.2:ENST00000617428.4	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	4.10594	4.2191600000000005	4.33238	0.0219367	0.0218901	0.123836	0.11491
chr19	41901121	41901209	7072136	0	+	0.409091	(0.408,0.44]	chr19	706992	2	SS5_PROX	SS5_PROX:INTRON	ARHGEF1	ENSG00000076928.18	ENST00000600274.5:ENST00000354532.8:ENST00000599846.5:ENST00000347545.8:ENST00000378152.8:ENST00000337665.8:ENST00000594521.5:ENST00000599589.5:ENST00000595897.5:ENST00000594258.1:ENST00000594044.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	25	2	4.10594	4.2191600000000005	4.33238	0.0219367	0.0218901	0.123836	0.11491
chr2	27045240	27045340	716629	0	+	0.43	(0.408,0.44]	chr2	82815	23	INTRON	INTRON	AGBL5	ENSG00000084693.16	ENST00000421915.5	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	4.10594	4.2191600000000005	4.33238	0.0219367	0.0218901	0.123836	0.11491
chr2	31871645	31871745	1089717	0	-	0.43	(0.408,0.44]	chr2	116861	13	INTRON	INTRON	MEMO1:DPY30	ENSG00000162959.14:ENSG00000162961.14	ENST00000295065.9:ENST00000446765.5:ENST00000404530.6:ENST00000379383.7:ENST00000490459.5:ENST00000426310.6:ENST00000422936.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	25	2	4.10594	4.2191600000000005	4.33238	0.0219367	0.0218901	0.123836	0.11491
chr2	73940321	73940421	811584	0	+	0.43	(0.408,0.44]	chr2	90798	9	INTRON	INTRON	DGUOK	ENSG00000114956.20	ENST00000348222.3:ENST00000629438.2:ENST00000418996.5:ENST00000264093.9:ENST00000462551.1:ENST00000489796.5:ENST00000462685.1:ENST00000493055.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	25	2	4.10594	4.2191600000000005	4.33238	0.0219367	0.0218901	0.123836	0.11491
chr3	136941085	136941185	1513231	0	+	0.42	(0.408,0.44]	chr3	158212	101	INTRON	INTRON	NCK1	ENSG00000158092.7	ENST00000481752.6:ENST00000288986.6:ENST00000491539.5:ENST00000485096.5:ENST00000488930.5:ENST00000496489.5:ENST00000469404.1:ENST00000467911.1	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	4.10594	4.2191600000000005	4.33238	0.0219367	0.0218901	0.123836	0.11491
chr3	170232536	170232636	1557400	0	+	0.44	(0.408,0.44]	chr3	161315	94	INTRON	INTRON	PRKCI	ENSG00000163558.13	ENST00000295797.5	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	4.10594	4.2191600000000005	4.33238	0.0219367	0.0218901	0.123836	0.11491
chr4	55896119	55896216	1961628	0	+	0.42268	(0.408,0.44]	chr4	196682	20	INTRON	INTRON	EXOC1	ENSG00000090989.18	ENST00000381295.7:ENST00000346134.11:ENST00000349598.6:ENST00000511971.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	25	2	4.10594	4.2191600000000005	4.33238	0.0219367	0.0218901	0.123836	0.11491
chr4	150773324	150773424	2269312	0	-	0.41	(0.408,0.44]	chr4	220739	111	INTRON	INTRON	LRBA	ENSG00000198589.14	ENST00000357115.9:ENST00000651943.2:ENST00000510413.5:ENST00000509835.5:ENST00000651695.1:ENST00000651035.1:ENST00000507224.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	25	2	4.10594	4.2191600000000005	4.33238	0.0219367	0.0218901	0.123836	0.11491
chr7	127991949	127992048	3405823	0	+	0.424242	(0.408,0.44]	chr7	318184	5	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000486037.1:ENST00000484767.5:ENST00000470723.5:ENST00000467238.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	25	2	4.10594	4.2191600000000005	4.33238	0.0219367	0.0218901	0.123836	0.11491
chr7	130562292	130562387	3639896	0	-	0.410526	(0.408,0.44]	chr7	338622	7	INTRON	INTRON	COPG2	ENSG00000158623.14	ENST00000425248.5:ENST00000617523.1:ENST00000330992.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	25	2	4.10594	4.2191600000000005	4.33238	0.0219367	0.0218901	0.123836	0.11491
chr8	119824395	119824495	4039983	0	-	0.42	(0.408,0.44]	chr8	368406	45	INTRON	INTRON	TAF2	ENSG00000064313.13	ENST00000378164.7:ENST00000685503.1:ENST00000690808.1:ENST00000692707.1:ENST00000685202.1:ENST00000688645.1:ENST00000685684.1:ENST00000689399.1:ENST00000685876.1:ENST00000689341.1:ENST00000691057.1:ENST00000686098.1:ENST00000690922.1:ENST00000685663.1:ENST00000692518.1:ENST00000688037.1:ENST00000691237.1:ENST00000684862.1:ENST00000685755.1:ENST00000691880.1:ENST00000523904.2:ENST00000689919.1:ENST00000685824.1:ENST00000685993.1:ENST00000692829.1:ENST00000692916.1:ENST00000686879.1:ENST00000685235.1:ENST00000690144.1:ENST00000689164.1:ENST00000691847.1:ENST00000688215.1:ENST00000690031.1:ENST00000689867.1:ENST00000689873.1:ENST00000521007.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	25	2	4.10594	4.2191600000000005	4.33238	0.0219367	0.0218901	0.123836	0.11491
chr9	113187059	113187159	4319159	0	-	0.44	(0.408,0.44]	chr9	397285	8	UTR3	UTR3:EXON_MRNA:INTRON	FKBP15	ENSG00000119321.10	ENST00000446284.6:ENST00000238256.8:ENST00000687395.1:ENST00000693409.1:ENST00000686727.1:ENST00000690630.1:ENST00000685068.1:ENST00000688113.1:ENST00000690399.1:ENST00000689059.1:ENST00000689480.1:ENST00000691917.1:ENST00000688949.1:ENST00000685945.1:ENST00000691776.1:ENST00000693271.1:ENST00000489645.1:ENST00000414250.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	25	2	4.10594	4.2191600000000005	4.33238	0.0219367	0.0218901	0.123836	0.11491
chrX	2357182	2357282	7744175	0	-	0.42	(0.408,0.44]	chrX	792947	188	INTRON	INTRON	DHRSX	ENSG00000169084.15	ENST00000334651.11:ENST00000412516.7:ENST00000444280.6:ENST00000441131.7:ENST00000478825.7:ENST00000430536.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	25	2	4.10594	4.2191600000000005	4.33238	0.0219367	0.0218901	0.123836	0.11491
chr1	100121649	100121725	515749	0	-	0.355263	(0.35,0.378]	chr1	60483	1	SS3_PROX	SS3_PROX:INTRON	SASS6	ENSG00000156876.10	ENST00000462159.1:ENST00000287482.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	104	2	2.78387	4.2190199999999995	5.65417	4.33402e-4	2.56782e-4	0.0190829	0.0142707
chr18	191646	191746	6855161	0	+	0.37	(0.35,0.378]	chr18	679521	110	INTRON	INTRON	USP14	ENSG00000101557.15	ENST00000582707.5:ENST00000400266.7:ENST00000261601.8:ENST00000578942.5:ENST00000383589.6:ENST00000583119.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	111	2	2.30106	4.218965	6.13687	0.0015939	5.13037e-5	0.0367961	0.0062158
chr21	46211736	46211834	7470700	0	-	0.44898	(0.44,0.476]	chr21	761500	6	INTRON	INTRON	LSS	ENSG00000160285.15	ENST00000356396.8:ENST00000397728.8:ENST00000457828.6:ENST00000522411.5	protein_coding	protein_coding	protein_coding	protein_coding	2	75	2	2.848	4.218945	5.58989	0.00215274	9.76499e-5	0.0417866	0.00830626
chr9	130879167	130879267	4215522	0	+	0.37	(0.35,0.378]	chr9	386472	2	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000318560.6	protein_coding	protein_coding	protein_coding	protein_coding	5	111	2	2.12112	4.2188799999999995	6.31664	0.00369765	2.12364e-5	0.0561162	0.00377197
chr1	3883741	3883840	3587	0	+	0.424242	(0.408,0.44]	chr1	762	1	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	DFFB	ENSG00000169598.17	ENST00000338895.7:ENST00000491998.5:ENST00000468793.5:ENST00000339350.7:ENST00000477548.5:ENST00000378209.8:ENST00000378206.5:ENST00000475969.5:ENST00000461150.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	83	2	2.5027	4.21874	5.93478	0.00238178	7.42058e-5	0.0449397	0.00770735
chr3	191392859	191392959	1590123	0	+	0.48	(0.476,0.515]	chr3	164633	12	UTR3	UTR3:EXON_MRNA	CCDC50	ENSG00000152492.15	ENST00000392455.9	protein_coding	protein_coding	protein_coding	protein_coding	1	55	2	3.19975	4.218719999999999	5.23769	0.00383299	5.17244e-4	0.0542786	0.0203753
chr9	91873262	91873362	4284495	0	-	0.59	(0.57,1]	chr9	393909	971	INTRON	INTRON	ROR2	ENSG00000169071.15	ENST00000375715.5:ENST00000375708.4:ENST00000550066.5:ENST00000495386.5:ENST00000546883.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	36	2	3.56369	4.21851	4.87333	4.26536e-4	3.21412e-4	0.0189958	0.0159645
chr12	53296352	53296429	5142318	0	+	0.311688	(0.28,0.32]	chr12	485257	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PFDN5	ENSG00000123349.15	ENST00000551018.5:ENST00000550069.2:ENST00000677326.1:ENST00000549759.2:ENST00000628881.2:ENST00000676468.1:ENST00000351500.7:ENST00000550880.5:ENST00000678256.1:ENST00000677199.1:ENST00000550846.5:ENST00000243040.10:ENST00000334478.9:ENST00000547130.6:ENST00000552341.5:ENST00000678284.1:ENST00000551223.5:ENST00000549995.1:ENST00000677184.1:ENST00000552742.6:ENST00000677712.1:ENST00000550513.1:ENST00000547228.1:ENST00000553171.2:ENST00000552548.6:ENST00000550964.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	65	2	2.78004	4.218495	5.65695	0.0193244	2.41184e-4	0.108861	0.0136674
chr11	9385644	9385743	4729418	0	+	0.40404	(0.378,0.408]	chr11	437819	4	INTRON	INTRON	IPO7	ENSG00000205339.10	ENST00000379719.8:ENST00000533233.1:ENST00000527431.1:ENST00000630083.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	94	2	2.6159	4.2184349999999995	5.82097	0.00194844	3.45471e-5	0.0400465	0.00467863
chr17	40410410	40410509	6768295	0	-	0.343434	(0.32,0.35]	chr17	665968	14	INTRON	INTRON	TOP2A	ENSG00000131747.15	ENST00000423485.6	protein_coding	protein_coding	protein_coding	protein_coding	3	91	2	2.59582	4.218249999999999	5.84068	0.00178944	3.015e-4	0.0392749	0.0160895
chr1	156201171	156201271	230775	0	+	0.31	(0.28,0.32]	chr1	27240	3	INTRON	INTRON	SLC25A44	ENSG00000160785.14	ENST00000423538.6:ENST00000684582.1:ENST00000359511.5:ENST00000469537.1:ENST00000468973.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	27	2	4.01002	4.21816	4.4263	0.0434868	0.0330296	0.162255	0.133816
chr12	50506439	50506539	5137164	0	+	0.29	(0.28,0.32]	chr12	484468	8	INTRON	INTRON	DIP2B	ENSG00000066084.13	ENST00000301180.10:ENST00000549620.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	27	2	4.01002	4.21816	4.4263	0.0434868	0.0330296	0.162255	0.133816
chr14	81411683	81411783	5937438	0	-	0.31	(0.28,0.32]	chr14	564234	115	INTRON	INTRON	STON2	ENSG00000140022.14	ENST00000553821.3:ENST00000555447.5:ENST00000649389.1:ENST00000652748.1:ENST00000555226.1:ENST00000554710.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	27	2	4.01002	4.21816	4.4263	0.0434868	0.0330296	0.162255	0.133816
chr15	89271987	89272086	6096023	0	+	0.292929	(0.28,0.32]	chr15	580129	31	INTRON	INTRON	FANCI	ENSG00000140525.20	ENST00000674831.1:ENST00000300027.12:ENST00000310775.12:ENST00000696717.1:ENST00000676003.1:ENST00000696718.1:ENST00000447611.6:ENST00000696719.1:ENST00000565522.5:ENST00000561894.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	27	2	4.01002	4.21816	4.4263	0.0434868	0.0330296	0.162255	0.133816
chr16	75058070	75058170	6390010	0	+	0.3	(0.28,0.32]	chr16	614488	108	INTRON	INTRON	ZNRF1	ENSG00000186187.12	ENST00000335325.9:ENST00000320619.10:ENST00000567962.5:ENST00000566250.5:ENST00000564320.1:ENST00000568511.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	27	2	4.01002	4.21816	4.4263	0.0434868	0.0330296	0.162255	0.133816
chr2	31889014	31889113	1089892	0	-	0.292929	(0.28,0.32]	chr2	116867	52	INTRON	INTRON	MEMO1:DPY30	ENSG00000162959.14:ENSG00000162961.14	ENST00000295065.9:ENST00000446765.5:ENST00000404530.6:ENST00000379383.7:ENST00000490459.5:ENST00000426310.6:ENST00000422936.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	27	2	4.01002	4.21816	4.4263	0.0434868	0.0330296	0.162255	0.133816
chr6	30291075	30291175	3076633	0	-	0.31	(0.28,0.32]	chr6	286134	45	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	HCG18	ENSG00000231074.10	ENST00000665953.1:ENST00000670397.1:ENST00000659132.1:ENST00000659836.1:ENST00000669374.1:ENST00000659563.1:ENST00000653541.1:ENST00000670071.1:ENST00000666294.1:ENST00000657247.1:ENST00000654996.1:ENST00000653301.1:ENST00000657595.1:ENST00000658695.1:ENST00000664861.1:ENST00000668974.1:ENST00000654915.1:ENST00000660593.1:ENST00000687430.1:ENST00000656629.1:ENST00000602550.5:ENST00000687815.1:ENST00000449544.6:ENST00000426882.6:ENST00000438412.6:ENST00000602698.6:ENST00000454129.5:ENST00000444126.5	lncRNA	lncRNA	lncRNA	lncRNA	0	27	2	4.01002	4.21816	4.4263	0.0434868	0.0330296	0.162255	0.133816
chr7	64344814	64344913	3319752	0	+	0.30303	(0.28,0.32]	chr7	308636	75	INTRON	INTRON	ZNF736	ENSG00000234444.10	ENST00000355095.8:ENST00000423484.3	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.01002	4.21816	4.4263	0.0434868	0.0330296	0.162255	0.133816
chr8	115564425	115564525	4030613	0	-	0.31	(0.28,0.32]	chr8	367954	488	INTRON	INTRON	TRPS1	ENSG00000104447.13	ENST00000395715.8:ENST00000640765.1:ENST00000220888.9:ENST00000519076.5:ENST00000520276.5:ENST00000519674.1	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.01002	4.21816	4.4263	0.0434868	0.0330296	0.162255	0.133816
chr1	33024119	33024199	416728	0	-	0.425	(0.408,0.44]	chr1	50347	1	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	AK2	ENSG00000004455.18	ENST00000373449.7:ENST00000672715.1:ENST00000695598.1:ENST00000550338.6:ENST00000695599.1:ENST00000354858.11:ENST00000695600.1:ENST00000695601.1:ENST00000491241.2:ENST00000695602.1:ENST00000469238.2:ENST00000695603.1:ENST00000695604.1:ENST00000672308.1:ENST00000548033.5:ENST00000467905.5:ENST00000480134.5:ENST00000695605.1:ENST00000673291.1:ENST00000487289.1:ENST00000548559.1:ENST00000551979.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	57	2	2.71911	4.21814	5.71717	0.0189489	5.09043e-5	0.108861	0.00585477
chr3	155904260	155904360	1537469	0	+	0.41	(0.408,0.44]	chr3	160111	3	SS5_PROX	SS5_PROX:INTRON	GMPS	ENSG00000163655.16	ENST00000496455.7:ENST00000295920.7:ENST00000476145.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	70	2	3.09037	4.217925	5.34548	9.40657e-4	5.47766e-4	0.0280776	0.0212924
chr1	19140098	19140192	386054	0	-	0.340426	(0.32,0.35]	chr1	45846	5	INTRON	INTRON	UBR4	ENSG00000127481.15	ENST00000375254.8:ENST00000425413.5:ENST00000417040.1	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.06299	4.217840000000001	4.37269	0.0559439	0.0154102	0.165463	0.108569
chr1	24794399	24794497	46552	0	+	0.336735	(0.32,0.35]	chr1	5770	8	INTRON	INTRON	CLIC4	ENSG00000169504.15	ENST00000488683.1:ENST00000497755.1:ENST00000489758.1:ENST00000374379.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	26	2	4.06299	4.217840000000001	4.37269	0.0559439	0.0154102	0.165463	0.108569
chr10	15778534	15778625	4564336	0	-	0.32967	(0.32,0.35]	chr10	421176	5	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	MINDY3	ENSG00000148481.14	ENST00000477891.1:ENST00000378036.5:ENST00000277632.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	26	2	4.06299	4.217840000000001	4.37269	0.0559439	0.0154102	0.165463	0.108569
chr11	67154801	67154901	4812803	0	+	0.33	(0.32,0.35]	chr11	448116	57	INTRON	INTRON	KDM2A	ENSG00000173120.15	ENST00000529006.7:ENST00000398645.6:ENST00000527157.1:ENST00000308783.9	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	26	2	4.06299	4.217840000000001	4.37269	0.0559439	0.0154102	0.165463	0.108569
chr17	688896	688996	6698310	0	-	0.34	(0.32,0.35]	chr17	655368	25	INTRON	INTRON	VPS53	ENSG00000141252.21	ENST00000437048.7:ENST00000680465.1:ENST00000681661.1:ENST00000680872.1:ENST00000681317.1:ENST00000680641.1:ENST00000681946.1:ENST00000681917.1:ENST00000573028.5:ENST00000571805.6:ENST00000681478.1:ENST00000680128.1:ENST00000291074.10:ENST00000389040.9:ENST00000401468.7:ENST00000680704.1:ENST00000680069.1:ENST00000681902.1:ENST00000679361.1:ENST00000681154.1:ENST00000680274.1:ENST00000681229.1:ENST00000681035.1:ENST00000681133.1:ENST00000576019.6:ENST00000679961.1:ENST00000575207.6:ENST00000680970.1:ENST00000680241.1:ENST00000681423.1:ENST00000572259.2:ENST00000575100.2:ENST00000681295.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	26	2	4.06299	4.217840000000001	4.37269	0.0559439	0.0154102	0.165463	0.108569
chr17	61844230	61844330	6808741	0	-	0.33	(0.32,0.35]	chr17	672605	351	INTRON	INTRON	BRIP1	ENSG00000136492.10	ENST00000259008.7:ENST00000682755.1:ENST00000682453.1:ENST00000683039.1:ENST00000682989.1:ENST00000682589.1:ENST00000683235.1:ENST00000682477.1:ENST00000684584.1:ENST00000577598.5:ENST00000682066.1:ENST00000584322.2:ENST00000683381.1:ENST00000579028.2:ENST00000682611.1:ENST00000683692.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	26	2	4.06299	4.217840000000001	4.37269	0.0559439	0.0154102	0.165463	0.108569
chr2	64555901	64556001	797987	0	+	0.33	(0.32,0.35]	chr2	89182	21	INTRON	INTRON	AFTPH	ENSG00000119844.17	ENST00000695864.1:ENST00000238856.8:ENST00000409933.6:ENST00000695867.1:ENST00000695960.1:ENST00000695866.1:ENST00000695865.1:ENST00000695869.1:ENST00000695868.1:ENST00000498706.5:ENST00000409183.5:ENST00000487769.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	26	2	4.06299	4.217840000000001	4.37269	0.0559439	0.0154102	0.165463	0.108569
chr2	65356992	65357092	1143437	0	-	0.35	(0.32,0.35]	chr2	122231	117	INTRON	INTRON	SPRED2	ENSG00000198369.10	ENST00000356388.9:ENST00000443619.6:ENST00000452315.5:ENST00000474228.1:ENST00000440972.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	26	2	4.06299	4.217840000000001	4.37269	0.0559439	0.0154102	0.165463	0.108569
chr4	48245255	48245355	2136460	0	-	0.34	(0.32,0.35]	chr4	210612	162	INTRON	INTRON	TEC	ENSG00000135605.13	ENST00000381501.8	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.06299	4.217840000000001	4.37269	0.0559439	0.0154102	0.165463	0.108569
chr4	48264152	48264251	2136649	0	-	0.343434	(0.32,0.35]	chr4	210612	351	INTRON	INTRON	TEC	ENSG00000135605.13	ENST00000381501.8	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.06299	4.217840000000001	4.37269	0.0559439	0.0154102	0.165463	0.108569
chr4	74165639	74165738	1972379	0	+	0.333333	(0.32,0.35]	chr4	197724	35	INTRON	INTRON	MTHFD2L	ENSG00000163738.19	ENST00000429519.5:ENST00000429335.5:ENST00000433372.5:ENST00000423607.6:ENST00000395759.6:ENST00000325278.7:ENST00000359107.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	26	2	4.06299	4.217840000000001	4.37269	0.0559439	0.0154102	0.165463	0.108569
chr7	133710714	133710814	3422758	0	+	0.35	(0.32,0.35]	chr7	319395	802	INTRON	INTRON	EXOC4	ENSG00000131558.15	ENST00000253861.5:ENST00000479839.6:ENST00000483800.5:ENST00000469115.5:ENST00000489931.5:ENST00000482089.5:ENST00000460346.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	26	2	4.06299	4.217840000000001	4.37269	0.0559439	0.0154102	0.165463	0.108569
chr9	77301916	77302016	4146201	0	+	0.33	(0.32,0.35]	chr9	377917	57	INTRON	INTRON	VPS13A	ENSG00000197969.14	ENST00000376636.7:ENST00000360280.8:ENST00000643348.1:ENST00000645632.1:ENST00000423463.6:ENST00000493341.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	26	2	4.06299	4.217840000000001	4.37269	0.0559439	0.0154102	0.165463	0.108569
chr1	149812323	149812373	549414	0	-	0.36	(0.35,0.378]	chr1	64496	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	H2BC18	ENSG00000203814.7	ENST00000545683.1:ENST00000469483.1:ENST00000369167.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	59	2	2.83709	4.217779999999999	5.59847	0.01435	1.39739e-4	0.0966737	0.0101825
chr1	206711548	206711647	302402	0	+	0.252525	[0,0.28]	chr1	34692	257	INTRON	INTRON	MAPKAPK2	ENSG00000162889.11	ENST00000367103.4:ENST00000294981.8	protein_coding	protein_coding	protein_coding	protein_coding	2	88	2	2.96015	4.217645	5.47514	0.00354561	0.00161799	0.0529186	0.0369252
chr12	19164437	19164537	5088618	0	+	0.47	(0.44,0.476]	chr12	480740	316	INTRON	INTRON	PLEKHA5	ENSG00000052126.15	ENST00000429027.7:ENST00000540972.5:ENST00000299275.10:ENST00000539256.5:ENST00000538714.5:ENST00000535357.5:ENST00000538034.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	56	2	3.31011	4.21762	5.12513	0.00259023	7.96486e-4	0.0452934	0.0258804
chr1	58674150	58674241	467565	0	-	0.340659	(0.32,0.35]	chr1	56447	1	INTRON	INTRON	MYSM1	ENSG00000162601.11	ENST00000655340.1:ENST00000493821.6:ENST00000472487.6:ENST00000665648.1:ENST00000659812.1:ENST00000659108.1:ENST00000401044.7:ENST00000660611.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	26	2	4.16186	4.21743	4.273	0.0368357	0.026079	0.138959	0.133676
chr1	218318990	218319090	317506	0	+	0.34	(0.32,0.35]	chr1	36399	110	INTRON	INTRON	RRP15	ENSG00000067533.6	ENST00000366932.4	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.16186	4.21743	4.273	0.0368357	0.026079	0.138959	0.133676
chr1	222495586	222495686	641445	0	-	0.35	(0.32,0.35]	chr1	75672	30	INTRON	INTRON	ENSG00000276997	ENSG00000276997.4	ENST00000613697.1:ENST00000619187.4:ENST00000620399.1	lncRNA	lncRNA	lncRNA	lncRNA	0	26	2	4.16186	4.21743	4.273	0.0368357	0.026079	0.138959	0.133676
chr11	74971291	74971390	4830331	0	+	0.333333	(0.32,0.35]	chr11	450690	12	INTRON	INTRON	SPCS2	ENSG00000118363.13	ENST00000530257.5:ENST00000526361.1:ENST00000532972.5:ENST00000263672.11:ENST00000528265.1:ENST00000527225.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	26	2	4.16186	4.21743	4.273	0.0368357	0.026079	0.138959	0.133676
chr12	122621680	122621780	5241607	0	+	0.33	(0.32,0.35]	chr12	497901	4	SS3_PROX	SS3_PROX:INTRON	KNTC1	ENSG00000184445.12	ENST00000450485.6:ENST00000333479.12:ENST00000436959.7:ENST00000534995.1	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.16186	4.21743	4.273	0.0368357	0.026079	0.138959	0.133676
chr14	53044385	53044484	5896321	0	-	0.323232	(0.32,0.35]	chr14	560006	78	UTR3	UTR3:EXON_MRNA	DDHD1	ENSG00000100523.16	ENST00000395606.5:ENST00000612692.4:ENST00000673822.2:ENST00000357758.3:ENST00000673827.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	26	2	4.16186	4.21743	4.273	0.0368357	0.026079	0.138959	0.133676
chr15	28240060	28240158	6123217	0	-	0.336735	(0.32,0.35]	chr15	583285	9	INTRON	INTRON	HERC2	ENSG00000128731.18	ENST00000261609.13	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.16186	4.21743	4.273	0.0368357	0.026079	0.138959	0.133676
chr18	13051838	13051935	6877194	0	+	0.329897	(0.32,0.35]	chr18	681436	16	INTRON	INTRON	CEP192	ENSG00000101639.19	ENST00000325971.12:ENST00000506447.5:ENST00000589596.5:ENST00000513432.5:ENST00000511820.6:ENST00000510237.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	26	2	4.16186	4.21743	4.273	0.0368357	0.026079	0.138959	0.133676
chr2	26124252	26124351	714004	0	+	0.323232	(0.32,0.35]	chr2	82453	140	INTRON	INTRON	RAB10	ENSG00000084733.11	ENST00000264710.5:ENST00000495146.5:ENST00000473035.1:ENST00000462003.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	26	2	4.16186	4.21743	4.273	0.0368357	0.026079	0.138959	0.133676
chr2	63598098	63598186	795848	0	+	0.329545	(0.32,0.35]	chr2	88929	7	EXON_MRNA	EXON_MRNA:INTRON	MDH1	ENSG00000014641.21	ENST00000544381.4:ENST00000409908.5:ENST00000233114.13:ENST00000539945.7:ENST00000409476.5:ENST00000436321.5:ENST00000472098.5:ENST00000421012.2:ENST00000432309.6:ENST00000484538.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	26	2	4.16186	4.21743	4.273	0.0368357	0.026079	0.138959	0.133676
chr2	105344516	105344615	843640	0	+	0.333333	(0.32,0.35]	chr2	94486	9	INTRON	INTRON	C2orf49	ENSG00000135974.10	ENST00000410049.1:ENST00000258457.7	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.16186	4.21743	4.273	0.0368357	0.026079	0.138959	0.133676
chr2	171695386	171695486	917784	0	+	0.33	(0.32,0.35]	chr2	101092	21	INTRON	INTRON	DYNC1I2	ENSG00000077380.16	ENST00000340296.8:ENST00000452242.5:ENST00000397119.8:ENST00000410079.7:ENST00000438879.5:ENST00000508530.5:ENST00000409197.5:ENST00000456808.5:ENST00000409317.5:ENST00000409773.5:ENST00000411953.5:ENST00000409453.5:ENST00000445378.5:ENST00000435234.5:ENST00000443458.5:ENST00000412370.5:ENST00000425485.5:ENST00000423910.5:ENST00000430778.5:ENST00000422646.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	26	2	4.16186	4.21743	4.273	0.0368357	0.026079	0.138959	0.133676
chr2	198009603	198009703	971154	0	+	0.33	(0.32,0.35]	chr2	104865	72	INTRON	INTRON	PLCL1	ENSG00000115896.16	ENST00000428675.6:ENST00000435320.1:ENST00000487695.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	26	2	4.16186	4.21743	4.273	0.0368357	0.026079	0.138959	0.133676
chr3	31628501	31628599	1392366	0	+	0.326531	(0.32,0.35]	chr3	145758	20	INTRON	INTRON	STT3B	ENSG00000163527.10	ENST00000295770.4:ENST00000463044.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	26	2	4.16186	4.21743	4.273	0.0368357	0.026079	0.138959	0.133676
chr3	93993568	93993668	1458227	0	+	0.34	(0.32,0.35]	chr3	153256	3	SS5_PROX	SS5_PROX:INTRON	ARL13B	ENSG00000169379.17	ENST00000535334.5:ENST00000303097.11:ENST00000681247.1:ENST00000679739.1:ENST00000680414.1:ENST00000681380.1:ENST00000492165.3:ENST00000478400.3:ENST00000681013.1:ENST00000680994.1:ENST00000679654.1:ENST00000486562.2:ENST00000679601.1:ENST00000394222.8:ENST00000471138.5:ENST00000679404.1:ENST00000679872.1:ENST00000681655.1:ENST00000460371.5:ENST00000679657.1:ENST00000335438.7:ENST00000679666.1:ENST00000679607.1:ENST00000679587.1:ENST00000475206.3:ENST00000680430.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	26	2	4.16186	4.21743	4.273	0.0368357	0.026079	0.138959	0.133676
chr3	149043088	149043188	1840550	0	-	0.34	(0.32,0.35]	chr3	185101	4	INTRON	INTRON	HLTF	ENSG00000071794.16	ENST00000310053.10:ENST00000465259.5:ENST00000392912.6:ENST00000494055.5:ENST00000467858.1	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.16186	4.21743	4.273	0.0368357	0.026079	0.138959	0.133676
chr6	35865823	35865923	3088254	0	-	0.33	(0.32,0.35]	chr6	288826	81	INTRON	INTRON	SRPK1	ENSG00000096063.16	ENST00000373825.7:ENST00000423325.6:ENST00000346162.10:ENST00000361690.7:ENST00000507292.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	26	2	4.16186	4.21743	4.273	0.0368357	0.026079	0.138959	0.133676
chr7	111116031	111116131	3619642	0	-	0.35	(0.32,0.35]	chr7	337093	1521	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	26	2	4.16186	4.21743	4.273	0.0368357	0.026079	0.138959	0.133676
chr8	128087680	128087778	3863029	0	+	0.346939	(0.32,0.35]	chr8	355594	27	INTRON	INTRON	PVT1	ENSG00000249859.13	ENST00000667305.1:ENST00000690350.1:ENST00000653522.1:ENST00000661830.1:ENST00000657289.1:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000657211.1:ENST00000653845.1:ENST00000651587.1:ENST00000692980.1:ENST00000654324.1:ENST00000657693.1:ENST00000666080.1:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000662410.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000657356.1:ENST00000657449.1:ENST00000656402.1:ENST00000667714.1:ENST00000654105.1:ENST00000664995.1:ENST00000670714.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000668123.1:ENST00000666776.1:ENST00000659912.1:ENST00000670532.1:ENST00000523068.2:ENST00000671088.1:ENST00000663461.1:ENST00000513868.6:ENST00000692433.1:ENST00000523190.7:ENST00000685606.1:ENST00000690788.1:ENST00000685634.1:ENST00000653990.1:ENST00000655783.1:ENST00000656411.1:ENST00000664742.1:ENST00000655099.1:ENST00000662709.1:ENST00000512617.7:ENST00000660122.1:ENST00000666452.1:ENST00000659666.1:ENST00000659892.1:ENST00000521600.5:ENST00000522875.5:ENST00000653497.1:ENST00000668098.1:ENST00000659106.1:ENST00000666147.1:ENST00000658350.1:ENST00000656999.1:ENST00000671092.1:ENST00000653853.1:ENST00000652492.1:ENST00000658429.1:ENST00000660781.1:ENST00000660912.1:ENST00000650930.1:ENST00000663715.1:ENST00000652883.1:ENST00000657844.1:ENST00000660659.1:ENST00000661391.1:ENST00000660146.1:ENST00000671587.1:ENST00000658018.1:ENST00000666878.1:ENST00000652993.1:ENST00000658305.1:ENST00000656077.1:ENST00000666039.1:ENST00000668619.1:ENST00000668479.1:ENST00000660069.1:ENST00000658158.1:ENST00000652728.1:ENST00000653608.1:ENST00000669509.1:ENST00000522414.2:ENST00000670535.1:ENST00000670009.1:ENST00000668215.1:ENST00000668351.1:ENST00000657682.1:ENST00000657945.1:ENST00000658065.1:ENST00000655148.1:ENST00000666223.1:ENST00000666105.1:ENST00000668480.1:ENST00000665175.1	lncRNA	lncRNA	lncRNA	lncRNA	0	26	2	4.16186	4.21743	4.273	0.0368357	0.026079	0.138959	0.133676
chr9	281205	281305	4088736	0	+	0.33	(0.32,0.35]	chr9	372422	3	SS5_PROX	SS5_PROX:INTRON	DOCK8	ENSG00000107099.18	ENST00000469197.5:ENST00000432829.7:ENST00000524396.5:ENST00000682121.1:ENST00000454469.6:ENST00000684384.1:ENST00000684166.1:ENST00000382329.2:ENST00000682249.1:ENST00000453981.5:ENST00000382341.5:ENST00000487230.5:ENST00000483757.6:ENST00000478380.5:ENST00000469391.5:ENST00000495184.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	26	2	4.16186	4.21743	4.273	0.0368357	0.026079	0.138959	0.133676
chr9	77886363	77886463	4270493	0	-	0.33	(0.32,0.35]	chr9	392874	702	INTRON	INTRON	GNAQ	ENSG00000156052.11	ENST00000286548.9:ENST00000411677.1	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.16186	4.21743	4.273	0.0368357	0.026079	0.138959	0.133676
chr12	28240979	28241079	5100777	0	+	0.37	(0.35,0.378]	chr12	481914	144	INTRON	INTRON	CCDC91	ENSG00000123106.11	ENST00000540794.5:ENST00000538586.5:ENST00000536154.5:ENST00000535520.5:ENST00000539107.5:ENST00000544649.5:ENST00000545336.5:ENST00000536442.6:ENST00000544780.5:ENST00000543534.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	73	2	2.63527	4.21737	5.79947	0.00443588	2.36402e-4	0.061054	0.0140941
chr13	26255069	26255169	5457852	0	+	0.42	(0.408,0.44]	chr13	523008	3	SS5_PROX	SS5_PROX:INTRON	CDK8	ENSG00000132964.12	ENST00000536792.5:ENST00000381527.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	26	2	3.83494	4.217365	4.59979	0.0411442	0.0109537	0.161534	0.0873034
chr16	75079834	75079934	6390228	0	+	0.44	(0.408,0.44]	chr16	614488	326	INTRON	INTRON	ZNRF1	ENSG00000186187.12	ENST00000335325.9:ENST00000320619.10:ENST00000567962.5:ENST00000566250.5:ENST00000564320.1:ENST00000568511.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	26	2	3.83494	4.217365	4.59979	0.0411442	0.0109537	0.161534	0.0873034
chr16	85001450	85001548	6534071	0	-	0.418367	(0.408,0.44]	chr16	633151	51	INTRON	INTRON	ZDHHC7	ENSG00000153786.13	ENST00000313732.9:ENST00000344861.9:ENST00000564466.5:ENST00000569017.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	26	2	3.83494	4.217365	4.59979	0.0411442	0.0109537	0.161534	0.0873034
chr3	57664778	57664872	1706713	0	-	0.425532	(0.408,0.44]	chr3	176045	7	INTRON	INTRON	DENND6A	ENSG00000174839.13	ENST00000311128.10:ENST00000487662.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	26	2	3.83494	4.217365	4.59979	0.0411442	0.0109537	0.161534	0.0873034
chr4	70921736	70921836	1970699	0	+	0.51	(0.476,0.515]	chr4	197571	188	INTRON	INTRON	MOB1B	ENSG00000173542.9	ENST00000502869.5:ENST00000509041.5:ENST00000309395.7:ENST00000396051.2:ENST00000511449.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	52	2	3.40003	4.217345	5.03466	0.00252065	0.00139193	0.0446195	0.0341261
chrX	80779273	80779373	7850132	0	-	0.38	(0.378,0.408]	chrX	800588	332	INTRON	INTRON	BRWD3	ENSG00000165288.11	ENST00000373275.5:ENST00000478415.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	57	2	2.90162	4.217305	5.53299	0.0113157	1.47095e-4	0.0886121	0.0105341
chr3	197106199	197106298	1901563	0	-	0.50505	(0.476,0.515]	chr3	190558	8	INTRON	INTRON	DLG1	ENSG00000075711.21	ENST00000667157.1:ENST00000346964.6:ENST00000656428.1:ENST00000663148.1:ENST00000655488.1:ENST00000357674.9:ENST00000671185.1:ENST00000658701.1:ENST00000667104.1:ENST00000661336.1:ENST00000669565.1:ENST00000670455.1:ENST00000656087.1:ENST00000670366.1:ENST00000653583.1:ENST00000653795.1:ENST00000671246.1:ENST00000661453.1:ENST00000665728.1:ENST00000664564.1:ENST00000653331.1:ENST00000660432.1:ENST00000660898.1:ENST00000657381.1:ENST00000659221.1:ENST00000654737.1:ENST00000669332.1:ENST00000659716.1:ENST00000660553.1:ENST00000664991.1:ENST00000419354.5:ENST00000661440.1:ENST00000667971.1:ENST00000670935.1:ENST00000668578.1:ENST00000666007.1:ENST00000661229.1:ENST00000660237.1:ENST00000657098.1:ENST00000661013.1:ENST00000436682.6:ENST00000452595.5:ENST00000662727.1:ENST00000422288.6:ENST00000448528.6:ENST00000443183.5:ENST00000656944.1:ENST00000392382.6:ENST00000450955.5:ENST00000658155.1:ENST00000669714.1:ENST00000654733.1:ENST00000469073.2:ENST00000419227.5:ENST00000392381.7:ENST00000471733.5:ENST00000419553.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	52	2	3.07422	4.217085	5.35995	0.00506023	7.54256e-4	0.0646039	0.0251179
chr19	23770426	23770526	7042503	0	+	0.39	(0.378,0.408]	chr19	702194	69	INTRON	INTRON	RPSAP58	ENSG00000288920.1	ENST00000471224.5:ENST00000692590.1:ENST00000475499.2:ENST00000686829.1:ENST00000689525.1:ENST00000691397.1:ENST00000688405.1:ENST00000692739.1:ENST00000687994.1:ENST00000484897.4:ENST00000685013.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	57	2	3.14892	4.217065	5.28521	0.00499984	4.52877e-4	0.0617433	0.0192381
chr15	63691433	63691528	6199440	0	-	0.347368	(0.32,0.35]	chr15	591268	4	INTRON	INTRON	HERC1	ENSG00000103657.14	ENST00000443617.7	protein_coding	protein_coding	protein_coding	protein_coding	1	57	2	2.96746	4.21694	5.46642	0.00815799	0.00127669	0.0810802	0.0326395
chr2	75996951	75997051	818129	0	+	0.4	(0.378,0.408]	chr2	91391	1241	INTRON	INTRON	ENSG00000287474	ENSG00000287474.1	ENST00000670606.1	lncRNA	lncRNA	lncRNA	lncRNA	1	58	2	3.32016	4.216655	5.11315	0.00268328	9.26795e-4	0.0464781	0.0278442
chr6	35013280	35013380	2850523	0	+	0.44	(0.408,0.44]	chr6	269278	185	INTRON	INTRON	ANKS1A	ENSG00000064999.15	ENST00000360359.5:ENST00000649117.1	protein_coding	protein_coding	protein_coding	protein_coding	3	83	2	2.70586	4.216425	5.72699	9.14702e-4	1.93446e-4	0.027804	0.0127226
chr8	129523974	129524074	4060522	0	-	0.54	(0.515,0.57]	chr8	369648	134	INTRON	INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1:ENST00000676273.1:ENST00000667643.1:ENST00000668791.1:ENST00000663716.1:ENST00000663572.1:ENST00000676148.1:ENST00000667962.1:ENST00000674877.1:ENST00000675316.1:ENST00000674656.1:ENST00000446592.7:ENST00000667341.1:ENST00000675186.1:ENST00000652971.1:ENST00000661447.1:ENST00000674863.1:ENST00000675498.1:ENST00000675527.1:ENST00000676108.1:ENST00000657647.1:ENST00000675589.1:ENST00000675913.1:ENST00000675109.1:ENST00000671632.1:ENST00000671311.1:ENST00000676099.1:ENST00000660652.1:ENST00000675522.1:ENST00000675183.1:ENST00000658861.1:ENST00000663991.1:ENST00000675044.1:ENST00000675435.1:ENST00000674639.1:ENST00000676069.1:ENST00000675532.1:ENST00000674762.1:ENST00000523151.6:ENST00000675948.1:ENST00000665364.1:ENST00000657251.1:ENST00000675166.1:ENST00000674883.1:ENST00000675867.1:ENST00000674580.1:ENST00000675393.1:ENST00000520048.1:ENST00000674906.1:ENST00000676030.1:ENST00000670588.1:ENST00000675072.1:ENST00000664936.1:ENST00000652914.1:ENST00000657069.1	lncRNA	lncRNA	lncRNA	lncRNA	1	52	2	2.65834	4.216374999999999	5.77441	0.0187418	4.92858e-5	0.117523	0.00608708
chr17	1677942	1678017	6701477	0	-	0.413333	(0.408,0.44]	chr17	656058	3	SS3_PROX	SS3_PROX:INTRON	PRPF8	ENSG00000174231.17	ENST00000304992.11:ENST00000572621.5:ENST00000577001.1	protein_coding	protein_coding	protein_coding	protein_coding	1	56	2	3.83217	4.21598	4.59979	0.0109537	1.79883e-4	0.0873034	0.0116696
chr9	123165318	123165417	4339436	0	-	0.454545	(0.44,0.476]	chr9	398906	39	INTRON	INTRON	STRBP	ENSG00000165209.19	ENST00000348403.10:ENST00000447404.6:ENST00000360998.3:ENST00000407982.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	83	2	2.73545	4.215765	5.69608	7.908e-4	2.01872e-4	0.0258324	0.0129814
chr17	60215372	60215471	6804083	0	-	0.373737	(0.35,0.378]	chr17	672257	2	INTRON	INTRON	USP32	ENSG00000170832.13	ENST00000300896.9:ENST00000592339.5:ENST00000590133.5:ENST00000591768.1	protein_coding	protein_coding	protein_coding	protein_coding	2	79	2	2.59656	4.215725	5.83489	0.00638551	4.33823e-5	0.0693551	0.00532052
chr7	98324691	98324791	3581187	0	-	0.4	(0.378,0.408]	chr7	333573	40	INTRON	INTRON	BAIAP2L1	ENSG00000006453.14	ENST00000005260.9:ENST00000462558.5:ENST00000473569.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	53	2	3.05393	4.21566	5.37739	0.00551532	0.0010014	0.0672816	0.0288906
chr7	148817391	148817488	3670078	0	-	0.329897	(0.32,0.35]	chr7	340569	1	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	EZH2	ENSG00000106462.12	ENST00000683292.1:ENST00000320356.7:ENST00000492143.5:ENST00000478654.5:ENST00000350995.6:ENST00000460911.5:ENST00000683744.1:ENST00000684510.1:ENST00000682317.1:ENST00000683293.1:ENST00000682263.1:ENST00000684300.1:ENST00000476773.5:ENST00000483967.5:ENST00000684436.1:ENST00000498186.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	237	2	3.84405	4.215095	4.58614	2.6816e-5	7.63894e-8	0.00430326	1.20617e-4
chr8	99194754	99194854	3813094	0	+	0.31	(0.28,0.32]	chr8	353170	13	INTRON	INTRON	VPS13B	ENSG00000132549.20	ENST00000496144.5:ENST00000683334.1:ENST00000357162.7:ENST00000358544.7:ENST00000683619.1:ENST00000683869.1:ENST00000682153.1:ENST00000682358.1:ENST00000682145.1:ENST00000355155.6:ENST00000682234.1:ENST00000683486.1:ENST00000684308.1:ENST00000521932.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	80	2	2.91124	4.21496	5.51868	0.00165124	0.00162747	0.0375241	0.0367966
chr9	92114721	92114821	4286453	0	-	0.27	[0,0.28]	chr9	394076	4	SS5_PROX	SS5_PROX:INTRON	SPTLC1	ENSG00000090054.16	ENST00000646534.1:ENST00000262554.7:ENST00000687427.1:ENST00000690139.1:ENST00000687972.1:ENST00000689401.1:ENST00000686600.1:ENST00000686799.1:ENST00000644140.1:ENST00000692458.1:ENST00000687817.1:ENST00000693147.1:ENST00000482632.6:ENST00000689423.1:ENST00000337841.4:ENST00000692363.1:ENST00000461132.2:ENST00000488921.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	86	2	2.6632	4.214639999999999	5.76608	0.00515076	0.00140074	0.0650394	0.0340865
chr5	65934399	65934499	2370922	0	+	0.36	(0.35,0.378]	chr5	228472	72	INTRON	INTRON	ERBIN	ENSG00000112851.15	ENST00000380943.6:ENST00000507490.1:ENST00000416865.6:ENST00000380935.5:ENST00000284037.10:ENST00000380938.6:ENST00000511297.5:ENST00000506030.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	87	2	2.6295	4.214485	5.79947	0.00142732	2.36402e-4	0.0347139	0.0140941
chr15	57987717	57987817	6186746	0	-	0.5	(0.476,0.515]	chr15	589736	215	INTRON	INTRON	ALDH1A2	ENSG00000128918.15	ENST00000537372.5:ENST00000249750.9:ENST00000347587.7:ENST00000430119.6:ENST00000558231.5:ENST00000559517.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	69	2	2.72507	4.21444	5.70381	0.0029369	1.75496e-4	0.0496505	0.01216
chr8	38282673	38282771	3936401	0	-	0.265306	[0,0.28]	chr8	360716	7	INTRON	INTRON	NSD3	ENSG00000147548.17	ENST00000317025.13:ENST00000433384.6:ENST00000527502.5	protein_coding	protein_coding	protein_coding	protein_coding	2	86	2	2.62985	4.214245	5.79864	0.00581422	0.00125481	0.068681	0.0323608
chr10	63449110	63449210	4635223	0	-	0.17	[0,0.28]	chr10	426236	683	INTRON	INTRON	JMJD1C	ENSG00000171988.20	ENST00000399262.7:ENST00000633035.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	28	2	3.96122	4.21424	4.46726	0.0617993	0.0427997	0.193423	0.148082
chr10	69336105	69336204	4446049	0	+	0.20202	[0,0.28]	chr10	410222	166	INTRON	INTRON	HK1	ENSG00000156515.24	ENST00000436817.6:ENST00000360289.6:ENST00000448642.6:ENST00000480047.5:ENST00000450646.6:ENST00000483077.5:ENST00000464803.6:ENST00000476368.6:ENST00000643399.2:ENST00000483054.5:ENST00000421088.5:ENST00000298649.8:ENST00000359426.7:ENST00000493591.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	28	2	3.96122	4.21424	4.46726	0.0617993	0.0427997	0.193423	0.148082
chr10	125830996	125831073	4536088	0	+	0.272727	[0,0.28]	chr10	418743	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	BCCIP	ENSG00000107949.17	ENST00000368759.5:ENST00000299130.7:ENST00000278100.11:ENST00000463330.5:ENST00000478798.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	28	2	3.96122	4.21424	4.46726	0.0617993	0.0427997	0.193423	0.148082
chr2	23849030	23849130	1080158	0	-	0.27	[0,0.28]	chr2	115293	146	INTRON	INTRON	ATAD2B	ENSG00000119778.15	ENST00000238789.10	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	3.96122	4.21424	4.46726	0.0617993	0.0427997	0.193423	0.148082
chr2	135751946	135752045	876035	0	+	0.272727	[0,0.28]	chr2	98061	32	INTRON	INTRON	UBXN4	ENSG00000144224.17	ENST00000415164.5:ENST00000426921.5:ENST00000272638.14:ENST00000416538.5:ENST00000470687.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	28	2	3.96122	4.21424	4.46726	0.0617993	0.0427997	0.193423	0.148082
chr2	223967519	223967616	1023652	0	+	0.257732	[0,0.28]	chr2	109410	6	UTR3	UTR3:EXON_MRNA	MRPL44	ENSG00000135900.4	ENST00000258383.4	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	3.96122	4.21424	4.46726	0.0617993	0.0427997	0.193423	0.148082
chr3	119480172	119480272	1485224	0	+	0.28	[0,0.28]	chr3	155115	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	POGLUT1	ENSG00000163389.12	ENST00000295588.9:ENST00000486607.5:ENST00000497447.5:ENST00000476573.5:ENST00000647766.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	28	2	3.96122	4.21424	4.46726	0.0617993	0.0427997	0.193423	0.148082
chr6	140449072	140449172	2970947	0	+	0.26	[0,0.28]	chr6	279019	1336	INTRON	INTRON	ENSG00000288714	ENSG00000288714.1	ENST00000684511.1	lncRNA	lncRNA	lncRNA	lncRNA	0	28	2	3.96122	4.21424	4.46726	0.0617993	0.0427997	0.193423	0.148082
chr7	36419043	36419143	3307299	0	+	0.26	[0,0.28]	chr7	307128	4	SS3_PROX	SS3_PROX:INTRON	ANLN	ENSG00000011426.11	ENST00000396068.6:ENST00000265748.7:ENST00000428612.5	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	3.96122	4.21424	4.46726	0.0617993	0.0427997	0.193423	0.148082
chr9	100207226	100207326	4177818	0	+	0.27	[0,0.28]	chr9	380840	749	INTRON	INTRON	INVS	ENSG00000119509.13	ENST00000262457.7:ENST00000496467.5:ENST00000262456.6:ENST00000466647.5:ENST00000460636.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	28	2	3.96122	4.21424	4.46726	0.0617993	0.0427997	0.193423	0.148082
chrX	47229215	47229292	7655956	0	+	0.272727	[0,0.28]	chrX	783378	3	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	CDK16	ENSG00000102225.17	ENST00000457458.6:ENST00000357227.9:ENST00000517426.5:ENST00000276052.10:ENST00000523344.5:ENST00000462827.2	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	3.96122	4.21424	4.46726	0.0617993	0.0427997	0.193423	0.148082
chrX	66180581	66180680	7672849	0	+	0.262626	[0,0.28]	chrX	785278	64	INTRON	INTRON	HEPH	ENSG00000089472.18	ENST00000519389.6:ENST00000683049.1:ENST00000458621.6:ENST00000684042.1:ENST00000343002.7:ENST00000336279.9:ENST00000441993.7:ENST00000419594.6:ENST00000682362.1:ENST00000425114.2:ENST00000682927.1:ENST00000683420.1:ENST00000684071.1:ENST00000684625.1:ENST00000684603.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	28	2	3.96122	4.21424	4.46726	0.0617993	0.0427997	0.193423	0.148082
chrX	130267261	130267361	7888712	0	-	0.24	[0,0.28]	chrX	803267	64	INTRON	INTRON	ZNF280C	ENSG00000056277.16	ENST00000370978.9:ENST00000447817.1	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	3.96122	4.21424	4.46726	0.0617993	0.0427997	0.193423	0.148082
chr17	61814053	61814153	6808439	0	-	0.32	(0.28,0.32]	chr17	672605	49	INTRON	INTRON	BRIP1	ENSG00000136492.10	ENST00000259008.7:ENST00000682755.1:ENST00000682453.1:ENST00000683039.1:ENST00000682989.1:ENST00000682589.1:ENST00000683235.1:ENST00000682477.1:ENST00000684584.1:ENST00000577598.5:ENST00000682066.1:ENST00000584322.2:ENST00000683381.1:ENST00000579028.2:ENST00000682611.1:ENST00000683692.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	59	2	3.17453	4.214205	5.25388	0.00429297	0.00385849	0.0599065	0.0542786
chr5	127021726	127021826	2714470	0	-	0.31	(0.28,0.32]	chr5	255278	750	INTRON	INTRON	MARCHF3	ENSG00000173926.6	ENST00000308660.6:ENST00000502289.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	59	2	3.17453	4.214205	5.25388	0.00429297	0.00385849	0.0599065	0.0542786
chr1	55094954	55095054	464631	0	-	0.4	(0.378,0.408]	chr1	56016	3	SS5_PROX	SS5_PROX:INTRON	USP24	ENSG00000162402.14	ENST00000294383.7:ENST00000482197.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	25	2	4.10661	4.214175	4.32174	0.0399023	0.0132362	0.143072	0.0999551
chr1	65209776	65209876	135244	0	+	0.38	(0.378,0.408]	chr1	15314	186	INTRON	INTRON	AK4	ENSG00000162433.15	ENST00000545314.5:ENST00000497030.5:ENST00000470888.6:ENST00000546702.5:ENST00000395334.6:ENST00000327299.8:ENST00000474968.5:ENST00000479060.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	25	2	4.10661	4.214175	4.32174	0.0399023	0.0132362	0.143072	0.0999551
chr10	26764631	26764717	4583528	0	-	0.383721	(0.378,0.408]	chr10	422367	3	INTRON	INTRON	ABI1	ENSG00000136754.18	ENST00000376138.7:ENST00000376166.5:ENST00000376160.5:ENST00000376139.6:ENST00000376142.6:ENST00000359188.8:ENST00000376170.8:ENST00000536334.5:ENST00000490841.6:ENST00000376137.8:ENST00000376140.4:ENST00000346832.10	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	4.10661	4.214175	4.32174	0.0399023	0.0132362	0.143072	0.0999551
chr14	74673933	74674033	5922609	0	-	0.39	(0.378,0.408]	chr14	562761	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	AREL1	ENSG00000119682.18	ENST00000557401.5:ENST00000356357.9:ENST00000681099.1:ENST00000681535.1:ENST00000681599.1:ENST00000555330.5:ENST00000680030.1:ENST00000556202.5:ENST00000481010.6:ENST00000556327.5:ENST00000469797.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	25	2	4.10661	4.214175	4.32174	0.0399023	0.0132362	0.143072	0.0999551
chr15	48749598	48749696	6166047	0	-	0.397959	(0.378,0.408]	chr15	587586	6	INTRON	INTRON	CEP152	ENSG00000103995.14	ENST00000380950.7:ENST00000399334.7:ENST00000325747.9	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	4.10661	4.214175	4.32174	0.0399023	0.0132362	0.143072	0.0999551
chr16	53992345	53992445	6357072	0	+	0.39	(0.378,0.408]	chr16	610178	70	INTRON	INTRON	FTO	ENSG00000140718.21	ENST00000636491.1:ENST00000471389.6:ENST00000636992.1:ENST00000637969.1:ENST00000637845.1:ENST00000637562.1:ENST00000464071.1:ENST00000563011.2:ENST00000612285.2:ENST00000431610.6:ENST00000460382.5:ENST00000463855.1:ENST00000635892.1:ENST00000268349.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	25	2	4.10661	4.214175	4.32174	0.0399023	0.0132362	0.143072	0.0999551
chr17	47096137	47096237	6788602	0	-	0.38	(0.378,0.408]	chr17	669501	134	INTRON	INTRON	ENSG00000262879	ENSG00000262879.6	ENST00000668245.1:ENST00000573341.6:ENST00000572864.5:ENST00000576938.1:ENST00000574741.1	lncRNA	lncRNA	lncRNA	lncRNA	0	25	2	4.10661	4.214175	4.32174	0.0399023	0.0132362	0.143072	0.0999551
chr18	57572194	57572286	6980327	0	-	0.402174	(0.378,0.408]	chr18	690621	2	INTRON	INTRON	FECH	ENSG00000066926.13	ENST00000262093.11:ENST00000652755.1:ENST00000651787.1:ENST00000382873.8:ENST00000585494.5:ENST00000682485.1:ENST00000592699.6:ENST00000585699.1:ENST00000585747.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	25	2	4.10661	4.214175	4.32174	0.0399023	0.0132362	0.143072	0.0999551
chr2	32417761	32417861	731393	0	+	0.38	(0.378,0.408]	chr2	84325	12	INTRON	INTRON	BIRC6	ENSG00000115760.15	ENST00000421745.7:ENST00000648282.1	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	4.10661	4.214175	4.32174	0.0399023	0.0132362	0.143072	0.0999551
chr2	216435896	216435996	1015585	0	+	0.39	(0.378,0.408]	chr2	108114	4	SS5_PROX	SS5_PROX:INTRON	SMARCAL1	ENSG00000138375.13	ENST00000357276.9:ENST00000358207.9:ENST00000392128.6:ENST00000445153.1	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	4.10661	4.214175	4.32174	0.0399023	0.0132362	0.143072	0.0999551
chr3	194481204	194481304	1891143	0	-	0.38	(0.378,0.408]	chr3	189246	131	INTRON	INTRON	ATP13A3	ENSG00000133657.17	ENST00000687055.1:ENST00000645538.1:ENST00000645319.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	25	2	4.10661	4.214175	4.32174	0.0399023	0.0132362	0.143072	0.0999551
chr5	70996230	70996329	2638669	0	-	0.383838	(0.378,0.408]	chr5	250672	80	INTRON	INTRON	NAIP	ENSG00000249437.8	ENST00000517649.6:ENST00000503719.6:ENST00000194097.8:ENST00000523981.5:ENST00000508426.6	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	4.10661	4.214175	4.32174	0.0399023	0.0132362	0.143072	0.0999551
chr6	34381664	34381764	3084664	0	-	0.39	(0.378,0.408]	chr6	288633	393	INTRON	INTRON	NUDT3:RPS10-NUDT3	ENSG00000272325.2:ENSG00000270800.3	ENST00000607016.2:ENST00000639725.1:ENST00000639877.1:ENST00000605528.2	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	4.10661	4.214175	4.32174	0.0399023	0.0132362	0.143072	0.0999551
chr6	107877990	107878088	3182021	0	-	0.387755	(0.378,0.408]	chr6	296368	7	INTRON	INTRON	SEC63	ENSG00000025796.14	ENST00000369002.9:ENST00000473746.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	25	2	4.10661	4.214175	4.32174	0.0399023	0.0132362	0.143072	0.0999551
chr7	102371843	102371942	3371153	0	+	0.383838	(0.378,0.408]	chr7	315430	54	INTRON	INTRON	PRKRIP1:ENSG00000239969	ENSG00000128563.13:ENSG00000239969.6	ENST00000477886.5:ENST00000469763.5:ENST00000482549.5:ENST00000496391.5:ENST00000484974.5:ENST00000492837.1:ENST00000482465.5	protein_coding	protein_coding	protein_coding:transcribed_unprocessed_pseudogene	protein_coding:processed_transcript	0	25	2	4.10661	4.214175	4.32174	0.0399023	0.0132362	0.143072	0.0999551
chr9	87730718	87730814	4152027	0	+	0.385417	(0.378,0.408]	chr9	378709	2	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CTSL	ENSG00000135047.16	ENST00000678442.1:ENST00000679149.1:ENST00000679157.1:ENST00000676946.1:ENST00000676531.1:ENST00000677935.1:ENST00000677345.1:ENST00000677821.1:ENST00000678752.1:ENST00000677019.1:ENST00000343150.10:ENST00000678367.1:ENST00000677864.1:ENST00000482054.2:ENST00000342020.6:ENST00000677262.1:ENST00000678649.1:ENST00000679141.1:ENST00000676881.1:ENST00000340342.11:ENST00000495822.2:ENST00000677955.1:ENST00000676769.1:ENST00000679030.1:ENST00000678596.1:ENST00000676961.1:ENST00000676576.1:ENST00000678599.1:ENST00000677638.1:ENST00000677615.1:ENST00000679252.1:ENST00000676466.1:ENST00000677349.1:ENST00000677761.1:ENST00000676480.1:ENST00000678965.1:ENST00000676909.1:ENST00000679028.1:ENST00000678259.1:ENST00000679025.1:ENST00000677523.1:ENST00000375894.10	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	25	2	4.10661	4.214175	4.32174	0.0399023	0.0132362	0.143072	0.0999551
chrX	40089221	40089321	7804766	0	-	0.4	(0.378,0.408]	chrX	795798	109	INTRON	INTRON	BCOR	ENSG00000183337.18	ENST00000378455.8:ENST00000397354.7:ENST00000342274.8:ENST00000615339.2:ENST00000680831.1:ENST00000378444.9:ENST00000679513.1:ENST00000672922.2:ENST00000673391.1:ENST00000406200.4:ENST00000412952.1	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	4.10661	4.214175	4.32174	0.0399023	0.0132362	0.143072	0.0999551
chrX	124961636	124961736	7884975	0	-	0.38	(0.378,0.408]	chrX	802793	650	INTRON	INTRON	TENM1	ENSG00000009694.13	ENST00000371130.7:ENST00000422452.2	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	4.10661	4.214175	4.32174	0.0399023	0.0132362	0.143072	0.0999551
chr12	121215458	121215557	5236737	0	+	0.606061	(0.57,1]	chr12	497064	27	EXON_MRNA	EXON_MRNA:INTRON	P2RX4	ENSG00000135124.16	ENST00000359949.11:ENST00000543430.5:ENST00000337233.9:ENST00000543984.5:ENST00000499638.6:ENST00000543318.5:ENST00000540930.5:ENST00000538701.5:ENST00000542067.5:ENST00000541187.5:ENST00000538417.2:ENST00000314442.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	36	2	3.02967	4.2141649999999995	5.39866	0.00471306	2.7267e-5	0.0631419	0.00430583
chr6	42747722	42747822	2866419	0	+	0.29	(0.28,0.32]	chr6	271284	3	INTRON	INTRON	BICRAL	ENSG00000112624.13	ENST00000614467.4	protein_coding	protein_coding	protein_coding	protein_coding	1	59	2	3.1268	4.2141649999999995	5.30153	0.00508956	0.00332518	0.0646039	0.0512081
chr12	118018571	118018671	5234126	0	+	0.41	(0.408,0.44]	chr12	496504	1	SS3_PROX	SS3_PROX:INTRON	RFC5	ENSG00000111445.14	ENST00000449641.6:ENST00000537315.5:ENST00000454402.7:ENST00000420967.5:ENST00000484086.6:ENST00000392542.6:ENST00000535092.1	protein_coding	protein_coding	protein_coding	protein_coding	4	104	2	2.38647	4.214085	6.0417	0.00234575	8.54902e-6	0.0434875	0.00210871
chr1	9728720	9728818	18678	0	+	0.397959	(0.378,0.408]	chr1	1792	18	UTR3	UTR3:EXON_MRNA	PIK3CD	ENSG00000171608.17	ENST00000377346.9:ENST00000628140.2	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	4.21226	4.213945	4.21563	0.0315429	0.0177403	0.13151	0.11319
chr11	46526688	46526788	4946576	0	-	0.39	(0.378,0.408]	chr11	463481	135	INTRON	INTRON	AMBRA1	ENSG00000110497.15	ENST00000683756.1:ENST00000534300.5:ENST00000533727.5:ENST00000314845.7:ENST00000458649.6:ENST00000528950.1:ENST00000529558.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	25	2	4.21226	4.213945	4.21563	0.0315429	0.0177403	0.13151	0.11319
chr11	96257693	96257793	5023513	0	-	0.4	(0.378,0.408]	chr11	473809	1638	INTRON	INTRON	MAML2	ENSG00000184384.14	ENST00000524717.6	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	4.21226	4.213945	4.21563	0.0315429	0.0177403	0.13151	0.11319
chr12	55773510	55773610	5332379	0	-	0.4	(0.378,0.408]	chr12	509126	125	INTRON	INTRON	SARNP	ENSG00000205323.9	ENST00000546604.5:ENST00000552884.5:ENST00000336133.8:ENST00000552080.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	25	2	4.21226	4.213945	4.21563	0.0315429	0.0177403	0.13151	0.11319
chr13	46028323	46028423	5585960	0	-	0.39	(0.378,0.408]	chr13	533848	74	INTRON	INTRON	ZC3H13	ENSG00000123200.17	ENST00000242848.8:ENST00000679008.1:ENST00000282007.7	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	4.21226	4.213945	4.21563	0.0315429	0.0177403	0.13151	0.11319
chr14	34627065	34627165	5867074	0	-	0.39	(0.378,0.408]	chr14	557216	170	INTRON	INTRON	SNX6	ENSG00000129515.20	ENST00000362031.10:ENST00000396526.7:ENST00000652385.1:ENST00000556162.6:ENST00000555416.6:ENST00000557265.6:ENST00000556712.6:ENST00000557341.6:ENST00000556303.1:ENST00000555648.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	25	2	4.21226	4.213945	4.21563	0.0315429	0.0177403	0.13151	0.11319
chr14	73774001	73774101	5920747	0	-	0.4	(0.378,0.408]	chr14	562359	138	INTRON	INTRON	MIDEAS	ENSG00000156030.14	ENST00000394071.6:ENST00000486739.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	25	2	4.21226	4.213945	4.21563	0.0315429	0.0177403	0.13151	0.11319
chr15	49337048	49337148	6020806	0	+	0.4	(0.378,0.408]	chr15	573783	53	INTRON	INTRON	GALK2	ENSG00000156958.15	ENST00000558399.5:ENST00000559580.5	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	4.21226	4.213945	4.21563	0.0315429	0.0177403	0.13151	0.11319
chr15	83121222	83121321	6079122	0	+	0.40404	(0.378,0.408]	chr15	578962	11	INTRON	INTRON	TM6SF1	ENSG00000136404.16	ENST00000379390.10:ENST00000322019.14:ENST00000379384.9:ENST00000258909.13:ENST00000565774.5:ENST00000565982.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	25	2	4.21226	4.213945	4.21563	0.0315429	0.0177403	0.13151	0.11319
chr16	12754806	12754906	6447369	0	-	0.4	(0.378,0.408]	chr16	621153	494	INTRON	INTRON	CPPED1	ENSG00000103381.12	ENST00000381774.9:ENST00000433677.6:ENST00000261660.4	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	4.21226	4.213945	4.21563	0.0315429	0.0177403	0.13151	0.11319
chr16	18153388	18153487	6454168	0	-	0.383838	(0.378,0.408]	chr16	621964	19	INTRON	INTRON	ENSG00000260242	ENSG00000260242.1	ENST00000563866.1	lncRNA	lncRNA	lncRNA	lncRNA	0	25	2	4.21226	4.213945	4.21563	0.0315429	0.0177403	0.13151	0.11319
chr17	5594580	5594679	6715956	0	-	0.393939	(0.378,0.408]	chr17	658490	97	INTRON	INTRON	NLRP1	ENSG00000091592.16	ENST00000576905.5:ENST00000572143.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	25	2	4.21226	4.213945	4.21563	0.0315429	0.0177403	0.13151	0.11319
chr19	29813636	29813736	7047223	0	+	0.38	(0.378,0.408]	chr19	702601	2	INTRON	INTRON	CCNE1	ENSG00000105173.14	ENST00000262643.8:ENST00000575243.5:ENST00000357943.9:ENST00000444983.6	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	4.21226	4.213945	4.21563	0.0315429	0.0177403	0.13151	0.11319
chr19	34303560	34303660	7051880	0	+	0.39	(0.378,0.408]	chr19	703270	22	INTRON	INTRON	GARRE1	ENSG00000166398.14	ENST00000588470.5:ENST00000299505.8:ENST00000588338.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	25	2	4.21226	4.213945	4.21563	0.0315429	0.0177403	0.13151	0.11319
chr2	23855509	23855609	1080223	0	-	0.38	(0.378,0.408]	chr2	115293	211	INTRON	INTRON	ATAD2B	ENSG00000119778.15	ENST00000238789.10	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	4.21226	4.213945	4.21563	0.0315429	0.0177403	0.13151	0.11319
chr2	148397274	148397374	890527	0	+	0.39	(0.378,0.408]	chr2	98685	40	INTRON	INTRON	MBD5	ENSG00000204406.14	ENST00000407073.5:ENST00000488372.5:ENST00000496158.5:ENST00000642680.2:ENST00000638043.2:ENST00000478804.3:ENST00000627651.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	25	2	4.21226	4.213945	4.21563	0.0315429	0.0177403	0.13151	0.11319
chr22	39956410	39956508	7516662	0	+	0.397959	(0.378,0.408]	chr22	768036	1	INTRON	INTRON	GRAP2	ENSG00000100351.17	ENST00000344138.9:ENST00000420971.5:ENST00000478445.1:ENST00000407075.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	25	2	4.21226	4.213945	4.21563	0.0315429	0.0177403	0.13151	0.11319
chr3	136280639	136280739	1511469	0	+	0.4	(0.378,0.408]	chr3	158100	182	INTRON	INTRON	PCCB	ENSG00000114054.14	ENST00000251654.9:ENST00000490504.5:ENST00000483687.5:ENST00000468777.5:ENST00000462637.5:ENST00000466072.5:ENST00000484181.5:ENST00000482086.5:ENST00000471595.5:ENST00000469217.5:ENST00000478469.5:ENST00000474833.5:ENST00000462542.5:ENST00000459873.1:ENST00000475214.5:ENST00000465176.5:ENST00000473073.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	25	2	4.21226	4.213945	4.21563	0.0315429	0.0177403	0.13151	0.11319
chr5	105197299	105197399	2694399	0	-	0.38	(0.378,0.408]	chr5	254244	1880	INTRON	INTRON	ENSG00000251574:ENSG00000253584	ENSG00000251574.8:ENSG00000253584.1	ENST00000503650.1:ENST00000522464.1	lncRNA	lncRNA	lncRNA	lncRNA	0	25	2	4.21226	4.213945	4.21563	0.0315429	0.0177403	0.13151	0.11319
chr6	89742353	89742452	3161228	0	-	0.393939	(0.378,0.408]	chr6	294726	16	INTRON	INTRON	MDN1	ENSG00000112159.12	ENST00000369393.8:ENST00000629399.2	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	4.21226	4.213945	4.21563	0.0315429	0.0177403	0.13151	0.11319
chr7	74670962	74671062	3335379	0	+	0.39	(0.378,0.408]	chr7	310340	125	INTRON	INTRON	GTF2I	ENSG00000263001.8	ENST00000650807.1:ENST00000690345.1:ENST00000613513.1:ENST00000573035.6:ENST00000614986.4:ENST00000620879.4:ENST00000621734.4:ENST00000443166.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	25	2	4.21226	4.213945	4.21563	0.0315429	0.0177403	0.13151	0.11319
chr7	156769081	156769181	3686766	0	-	0.39	(0.378,0.408]	chr7	342051	49	INTRON	INTRON	LMBR1	ENSG00000105983.23	ENST00000353442.10:ENST00000448926.5:ENST00000415428.5:ENST00000454132.5:ENST00000434503.5:ENST00000430278.5:ENST00000434278.5:ENST00000444719.5:ENST00000461469.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	25	2	4.21226	4.213945	4.21563	0.0315429	0.0177403	0.13151	0.11319
chr8	73608553	73608653	3969522	0	-	0.38	(0.378,0.408]	chr8	364104	43	INTRON	INTRON	STAU2	ENSG00000040341.18	ENST00000524300.6:ENST00000522695.5:ENST00000523558.5:ENST00000521210.5:ENST00000355780.9:ENST00000519961.5:ENST00000521727.5:ENST00000521451.5:ENST00000522509.5:ENST00000517542.5:ENST00000518981.5:ENST00000518767.5:ENST00000518502.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	25	2	4.21226	4.213945	4.21563	0.0315429	0.0177403	0.13151	0.11319
chr8	129876091	129876191	4062514	0	-	0.38	(0.378,0.408]	chr8	369780	42	INTRON	INTRON	CYRIB	ENSG00000153310.21	ENST00000694912.1:ENST00000519824.6:ENST00000523288.5:ENST00000519110.5:ENST00000401979.6:ENST00000523509.5:ENST00000522746.5:ENST00000517654.5:ENST00000522250.5:ENST00000519540.5:ENST00000522941.5:ENST00000519142.5:ENST00000518879.5:ENST00000522702.5:ENST00000521223.5:ENST00000520204.5:ENST00000518283.5:ENST00000523993.5:ENST00000520254.5:ENST00000519020.5:ENST00000518167.5:ENST00000517672.5:ENST00000519070.5:ENST00000522361.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	25	2	4.21226	4.213945	4.21563	0.0315429	0.0177403	0.13151	0.11319
chr10	68463092	68463191	4639680	0	-	0.454545	(0.44,0.476]	chr10	426716	35	INTRON	INTRON	DNA2	ENSG00000138346.15	ENST00000358410.8:ENST00000551118.6:ENST00000399179.6:ENST00000399180.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	114	2	4.15496	4.21382	4.27268	3.09831e-5	2.96005e-5	0.00451038	0.00443703
chr4	174317383	174317481	2082930	0	+	0.244898	[0,0.28]	chr4	205864	1	UTR3	UTR3:EXON_MRNA:INTRON	CEP44	ENSG00000164118.13	ENST00000457424.6:ENST00000396791.7:ENST00000503780.6:ENST00000426172.3:ENST00000296519.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	105	2	2.62887	4.213755	5.79864	0.00205554	0.00125481	0.0420839	0.0323608
chr1	36144294	36144394	423000	0	-	0.36	(0.35,0.378]	chr1	51049	34	INTRON	INTRON	TRAPPC3	ENSG00000054116.12	ENST00000617904.4:ENST00000616074.4:ENST00000616395.4:ENST00000373166.8:ENST00000373163.5:ENST00000373162.5:ENST00000469757.1:ENST00000373159.1:ENST00000497251.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	54	2	3.21677	4.213475	5.21018	0.00313804	0.00228003	0.0514466	0.0426265
chr3	131001850	131001950	1504033	0	+	0.37	(0.35,0.378]	chr3	157361	6	UTR3	UTR3:EXON_MRNA:INTRON	ATP2C1	ENSG00000017260.20	ENST00000504381.5:ENST00000505330.5:ENST00000507488.6:ENST00000508532.5:ENST00000533801.6:ENST00000510168.6:ENST00000513801.5:ENST00000504948.5:ENST00000328560.12:ENST00000428331.6:ENST00000422190.6:ENST00000359644.7:ENST00000504612.5:ENST00000514654.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	54	2	3.21677	4.213475	5.21018	0.00313804	0.00228003	0.0514466	0.0426265
chr5	95729382	95729481	2431216	0	+	0.272727	[0,0.28]	chr5	233627	113	INTRON	INTRON	RHOBTB3	ENSG00000164292.13	ENST00000510226.5:ENST00000515852.5:ENST00000504949.1	protein_coding	retained_intron	protein_coding	retained_intron:processed_transcript	2	86	2	2.5957	4.213095	5.83049	0.00656974	0.00112548	0.0736092	0.0306963
chr20	62904997	62905089	7362231	0	-	0.293478	(0.28,0.32]	chr20	751177	1	UTR3	UTR3:EXON_MRNA:INTRON	DIDO1	ENSG00000101191.17	ENST00000266070.8:ENST00000395343.6:ENST00000395340.5:ENST00000370371.8:ENST00000370368.5:ENST00000354665.8:ENST00000370366.1	protein_coding	protein_coding	protein_coding	protein_coding	1	59	2	3.22074	4.21267	5.2046	0.00448664	0.00362783	0.0593175	0.055479
chr21	37202017	37202105	7406182	0	+	0.284091	(0.28,0.32]	chr21	754831	6	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TTC3	ENSG00000182670.14	ENST00000492275.6:ENST00000418766.6:ENST00000450533.6:ENST00000696812.1:ENST00000696811.1:ENST00000463216.6:ENST00000411496.2:ENST00000399017.6:ENST00000354749.6:ENST00000479930.5:ENST00000476784.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	59	2	3.22074	4.21267	5.2046	0.00448664	0.00362783	0.0593175	0.055479
chr4	26328047	26328147	1936743	0	+	0.32	(0.28,0.32]	chr4	194354	47	INTRON	INTRON	RBPJ	ENSG00000168214.22	ENST00000512351.5:ENST00000681799.1:ENST00000681403.1:ENST00000342295.6:ENST00000512671.6:ENST00000506956.5:ENST00000345843.8:ENST00000361572.10:ENST00000514380.5:ENST00000514807.5:ENST00000348160.9:ENST00000681506.1:ENST00000509158.6:ENST00000691085.1:ENST00000692303.1:ENST00000681856.1:ENST00000513182.5:ENST00000681025.1:ENST00000681679.1:ENST00000680210.1:ENST00000355476.8:ENST00000680140.1:ENST00000511401.5:ENST00000680511.1:ENST00000510778.7:ENST00000679698.1:ENST00000679469.1:ENST00000681484.1:ENST00000505958.6:ENST00000507561.5:ENST00000514730.5:ENST00000507574.5:ENST00000514675.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	59	2	3.22074	4.21267	5.2046	0.00448664	0.00362783	0.0593175	0.055479
chr19	18990986	18991085	7153374	0	-	0.363636	(0.35,0.378]	chr19	723004	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	SUGP2	ENSG00000064607.17	ENST00000593795.5:ENST00000594773.5:ENST00000337018.10:ENST00000452918.7:ENST00000330854.15:ENST00000597163.5:ENST00000597095.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	54	2	3.26794	4.212585	5.15723	0.00272706	0.00257067	0.0467523	0.0466761
chr16	31508845	31508940	6340807	0	+	0.452632	(0.44,0.476]	chr16	608407	5	EXON_LNCRNA	EXON_LNCRNA	ENSG00000260625	ENSG00000260625.3	ENST00000651898.1:ENST00000569782.2	lncRNA	lncRNA	lncRNA	lncRNA	1	53	2	2.89047	4.21243	5.53439	0.00955699	4.05863e-4	0.0863913	0.0185763
chr1	241881415	241881515	344715	0	+	0.37	(0.35,0.378]	chr1	40152	1	SS3_PROX	SS3_PROX:INTRON	EXO1	ENSG00000174371.17	ENST00000366548.8:ENST00000348581.9:ENST00000518483.5:ENST00000521202.2	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	3.94291	4.212375	4.48184	0.0374229	0.0191702	0.155878	0.108861
chr1	247148957	247149057	683638	0	-	0.36	(0.35,0.378]	chr1	80151	98	INTRON	INTRON	ZNF124	ENSG00000196418.13	ENST00000472531.5:ENST00000476312.1:ENST00000491356.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	26	2	3.94291	4.212375	4.48184	0.0374229	0.0191702	0.155878	0.108861
chr10	24722385	24722485	4581935	0	-	0.36	(0.35,0.378]	chr10	422211	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ARHGAP21	ENSG00000107863.20	ENST00000612832.4:ENST00000396432.7:ENST00000376410.7:ENST00000446003.5:ENST00000472150.1:ENST00000463892.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	26	2	3.94291	4.212375	4.48184	0.0374229	0.0191702	0.155878	0.108861
chr17	64480889	64480974	6815605	0	-	0.364706	(0.35,0.378]	chr17	673727	1	SS5_PROX	SS5_PROX:INTRON	POLG2	ENSG00000256525.8	ENST00000539111.7:ENST00000581355.1:ENST00000671755.1:ENST00000673460.1:ENST00000585104.2:ENST00000582501.5:ENST00000577506.5:ENST00000580490.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	26	2	3.94291	4.212375	4.48184	0.0374229	0.0191702	0.155878	0.108861
chr19	10222203	10222299	7135161	0	-	0.395833	(0.378,0.408]	chr19	719288	9	UTR3	UTR3:EXON_MRNA:INTRON	DNMT1:S1PR2	ENSG00000130816.17:ENSG00000267534.4	ENST00000588952.5:ENST00000592342.5:ENST00000646641.1	protein_coding	protein_coding	protein_coding	protein_coding	1	57	2	2.84663	4.212225	5.57782	0.0133954	1.18586e-4	0.0946278	0.00930884
chr3	149078941	149079041	1840924	0	-	0.36	(0.35,0.378]	chr3	185197	25	INTRON	INTRON	HLTF	ENSG00000071794.16	ENST00000310053.10:ENST00000465259.5:ENST00000392912.6:ENST00000494055.5	protein_coding	protein_coding	protein_coding	protein_coding	2	80	2	2.32464	4.2122	6.09976	0.0159285	1.03844e-5	0.101453	0.00235262
chr2	58181148	58181247	1126135	0	-	0.353535	(0.35,0.378]	chr2	120899	84	INTRON	INTRON	FANCL	ENSG00000115392.13	ENST00000696400.1:ENST00000403295.8:ENST00000696492.1:ENST00000427708.7:ENST00000696314.1:ENST00000696315.1:ENST00000696454.1:ENST00000696508.1:ENST00000696548.1:ENST00000696542.1:ENST00000696432.1:ENST00000696319.1:ENST00000403676.6:ENST00000696433.1:ENST00000696434.1:ENST00000696499.1:ENST00000696564.1:ENST00000402135.8:ENST00000696546.1:ENST00000233741.9:ENST00000696316.1:ENST00000696378.1:ENST00000696435.1:ENST00000696493.1:ENST00000696543.1:ENST00000696544.1:ENST00000696545.1:ENST00000696565.1:ENST00000696620.1:ENST00000696621.1:ENST00000696635.1:ENST00000696364.1:ENST00000696634.1:ENST00000696619.1:ENST00000696317.1:ENST00000696622.1:ENST00000696467.1:ENST00000696547.1:ENST00000449070.6:ENST00000696305.1:ENST00000417361.2:ENST00000696338.1:ENST00000696361.1:ENST00000696318.1:ENST00000696371.1:ENST00000696409.1:ENST00000696410.1:ENST00000696455.1:ENST00000696468.1:ENST00000696527.1:ENST00000696567.1:ENST00000696324.1:ENST00000696566.1:ENST00000696623.1:ENST00000446381.6:ENST00000696469.1:ENST00000696624.1:ENST00000696411.1:ENST00000696475.1:ENST00000470506.2:ENST00000696358.1:ENST00000696373.1:ENST00000696394.1:ENST00000696320.1:ENST00000696339.1:ENST00000696395.1:ENST00000696341.1:ENST00000696340.1:ENST00000696374.1:ENST00000696396.1:ENST00000696412.1:ENST00000696342.1:ENST00000696325.1:ENST00000696399.1:ENST00000696398.1:ENST00000696306.1:ENST00000696397.1:ENST00000696360.1:ENST00000696344.1:ENST00000696343.1:ENST00000696637.1:ENST00000696362.1:ENST00000696528.1:ENST00000696497.1:ENST00000696326.1:ENST00000696638.1:ENST00000696625.1:ENST00000696510.1:ENST00000696438.1:ENST00000696496.1:ENST00000696509.1:ENST00000696569.1:ENST00000696457.1:ENST00000696458.1:ENST00000696473.1:ENST00000696495.1:ENST00000696415.1:ENST00000696472.1:ENST00000696494.1:ENST00000696363.1:ENST00000696414.1:ENST00000696529.1:ENST00000696471.1:ENST00000696459.1:ENST00000696498.1:ENST00000696532.1:ENST00000696416.1:ENST00000696530.1:ENST00000696460.1:ENST00000696570.1:ENST00000696531.1:ENST00000696307.1:ENST00000696401.1:ENST00000696345.1:ENST00000696377.1:ENST00000696417.1:ENST00000696594.1:ENST00000696595.1:ENST00000696379.1:ENST00000696346.1:ENST00000696380.1:ENST00000696347.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	87	2	2.43108	4.21214	5.9932	0.00345501	1.00366e-4	0.0539802	0.00904854
chr16	22468155	22468246	6322256	0	+	0.406593	(0.378,0.408]	chr16	605344	5	INTRON	INTRON	SMG1P1	ENSG00000237296.10	ENST00000381231.5:ENST00000309865.11:ENST00000687936.1:ENST00000691423.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	1	55	2	3.68517	4.21178	4.73839	0.00837252	3.90172e-4	0.0774402	0.0177751
chrX	18322480	18322577	7770731	0	-	0.340206	(0.32,0.35]	chrX	794188	17	INTRON	INTRON	SCML2	ENSG00000102098.19	ENST00000251900.9	protein_coding	protein_coding	protein_coding	protein_coding	1	61	2	3.03597	4.211405	5.38684	0.00832487	5.01164e-4	0.0774402	0.020217099999999998
chr7	87162638	87162738	3345725	0	+	0.33	(0.32,0.35]	chr7	311631	68	INTRON	INTRON	DMTF1	ENSG00000135164.19	ENST00000413276.6:ENST00000447863.5:ENST00000579677.5:ENST00000425406.5:ENST00000446796.6:ENST00000420131.5:ENST00000414630.6:ENST00000547146.6:ENST00000579850.5:ENST00000453049.5:ENST00000331242.12:ENST00000430405.7:ENST00000449088.7:ENST00000448598.5:ENST00000428819.5:ENST00000432937.6:ENST00000584619.5:ENST00000432366.6:ENST00000423590.6:ENST00000394703.9:ENST00000584457.5:ENST00000580710.5:ENST00000579592.5:ENST00000434534.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	94	2	2.91353	4.21103	5.50853	0.0010959399999999999	3.88987e-4	0.0304174	0.0177751
chr2	108741279	108741378	847635	0	+	0.50505	(0.476,0.515]	chr2	94821	2	INTRON	INTRON	RANBP2	ENSG00000153201.16	ENST00000283195.11	protein_coding	protein_coding	protein_coding	protein_coding	1	53	2	3.58243	4.211025	4.83962	0.00480934	6.18479e-4	0.0602209	0.0223951
chr6	7299123	7299223	3053249	0	-	0.5	(0.476,0.515]	chr6	283963	3	SS3_PROX	SS3_PROX:INTRON	SSR1	ENSG00000124783.14	ENST00000474597.5:ENST00000650389.1:ENST00000244763.9:ENST00000397511.6:ENST00000489567.5:ENST00000479365.5:ENST00000479485.5:ENST00000462112.1	protein_coding	protein_coding	protein_coding	protein_coding	1	53	2	3.58243	4.211025	4.83962	0.00480934	6.18479e-4	0.0602209	0.0223951
chr16	81448236	81448336	6405031	0	+	0.38	(0.378,0.408]	chr16	615026	23	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8	protein_coding	protein_coding	protein_coding	protein_coding	3	93	2	2.56413	4.21096	5.85779	0.0024299	2.83884e-5	0.0444645	0.00422437
chr1	46132338	46132435	442116	0	-	0.474227	(0.44,0.476]	chr1	53503	5	UTR5	UTR5:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PIK3R3	ENSG00000117461.15	ENST00000372006.5:ENST00000262741.10:ENST00000420542.5:ENST00000423209.5:ENST00000493202.1:ENST00000425892.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	74	2	2.74546	4.210525	5.67559	0.00326603	6.34721e-5	0.0508595	0.00658818
chr11	17076196	17076269	4927718	0	-	0.493151	(0.476,0.515]	chr11	461297	2	SS5_PROX	SS5_PROX:INTRON	RPS13	ENSG00000110700.7	ENST00000525634.6:ENST00000526895.5:ENST00000228140.6:ENST00000525828.1:ENST00000533969.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	53	2	2.87879	4.210445	5.5421	0.00999149	3.56777e-4	0.0879541	0.0175154
chr16	85512484	85512584	6414955	0	+	0.5	(0.476,0.515]	chr16	615465	1532	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	1	53	2	2.87879	4.210445	5.5421	0.00999149	3.56777e-4	0.0879541	0.0175154
chr6	149732529	149732628	3246827	0	-	0.50505	(0.476,0.515]	chr6	301677	4	INTRON	INTRON	NUP43	ENSG00000120253.14	ENST00000340413.7:ENST00000367404.8:ENST00000403890.7:ENST00000367402.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	52	2	3.44784	4.210185	4.97253	0.00311573	0.00113238	0.0498063	0.0308465
chr7	151094636	151094735	3448433	0	+	0.343434	(0.32,0.35]	chr7	322165	37	INTRON	INTRON	AGAP3	ENSG00000133612.19	ENST00000490097.5:ENST00000463381.5:ENST00000397238.7:ENST00000622464.4:ENST00000479901.5:ENST00000473312.5:ENST00000469901.5:ENST00000476375.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	130	2	4.04117	4.209825	4.37848	1.61151e-4	1.25403e-5	0.0116265	0.00264407
chr1	53929844	53929931	461153	0	-	0.367816	(0.35,0.378]	chr1	55552	5	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	HSPB11	ENSG00000081870.12	ENST00000371378.6:ENST00000194214.10:ENST00000371377.3:ENST00000371376.1	protein_coding	protein_coding	protein_coding	protein_coding	1	54	2	3.31736	4.20981	5.10226	0.00327038	0.00211072	0.0508595	0.0425419
chr8	26330599	26330698	3716488	0	+	0.424242	(0.408,0.44]	chr8	345376	48	INTRON	INTRON	PPP2R2A	ENSG00000221914.11	ENST00000380737.8:ENST00000520329.5:ENST00000518254.5:ENST00000524169.5:ENST00000518397.5:ENST00000522535.5:ENST00000665949.1:ENST00000522150.5:ENST00000523473.5:ENST00000521095.5:ENST00000660435.1:ENST00000523925.5:ENST00000524099.5:ENST00000315985.7:ENST00000519636.5:ENST00000522482.5:ENST00000521557.5:ENST00000519439.5:ENST00000521484.5:ENST00000523964.5:ENST00000667651.1:ENST00000657943.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	52	2	3.46104	4.209605	4.95817	0.00372419	0.00105552	0.0535094	0.0299229
chr15	25416635	25416733	6121615	0	-	0.295918	(0.28,0.32]	chr15	582921	4	INTRON	INTRON	UBE3A	ENSG00000114062.22	ENST00000648336.2:ENST00000438097.6:ENST00000635914.1:ENST00000638155.1:ENST00000637886.1:ENST00000638011.1:ENST00000649550.1:ENST00000650110.1:ENST00000630424.2:ENST00000566215.5:ENST00000428984.6:ENST00000675177.1:ENST00000675593.1:ENST00000625778.3:ENST00000675000.1:ENST00000626793.2:ENST00000628733.2:ENST00000630907.2:ENST00000675038.1:ENST00000629886.2:ENST00000628267.2:ENST00000629252.2:ENST00000625681.2:ENST00000626589.2:ENST00000627018.1:ENST00000676452.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	59	2	3.26551	4.209545	5.15358	0.0052282	0.0030714	0.0633615	0.0509893
chr7	152365071	152365171	3680584	0	-	0.32	(0.28,0.32]	chr7	341660	60	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000682301.1:ENST00000452749.2:ENST00000680867.1:ENST00000683800.1:ENST00000684278.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	59	2	3.26551	4.209545	5.15358	0.0052282	0.0030714	0.0633615	0.0509893
chr6	118898385	118898484	2947200	0	+	0.30303	(0.28,0.32]	chr6	277423	35	INTRON	INTRON	ASF1A	ENSG00000111875.8	ENST00000229595.6:ENST00000511766.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	59	2	3.02632	4.209335	5.39235	0.0071944	0.0024844	0.0756118	0.0446195
chr7	148807450	148807547	3669968	0	-	0.298969	(0.28,0.32]	chr7	340535	3	UTR3	UTR3:EXON_MRNA	EZH2	ENSG00000106462.12	ENST00000683292.1:ENST00000320356.7:ENST00000492143.5:ENST00000478654.5:ENST00000350995.6:ENST00000460911.5:ENST00000684400.1:ENST00000683744.1:ENST00000684510.1:ENST00000682317.1:ENST00000683293.1:ENST00000682263.1:ENST00000684300.1:ENST00000476773.5:ENST00000483967.5:ENST00000684436.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	62	2	3.616	4.209275	4.80255	0.0137406	7.42427e-4	0.0949306	0.024913
chr19	4431293	4431372	7002062	0	+	0.43038	(0.408,0.44]	chr19	694567	2	SS5_PROX	SS5_PROX:INTRON	CHAF1A	ENSG00000167670.16	ENST00000301280.10:ENST00000587368.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	52	2	3.02513	4.2091650000000005	5.3932	0.0059965	7.81492e-4	0.0700606	0.0257168
chr7	23448088	23448187	3503443	0	-	0.444444	(0.44,0.476]	chr7	326910	169	INTRON	INTRON	IGF2BP3	ENSG00000136231.14	ENST00000258729.8:ENST00000421467.6:ENST00000468263.5:ENST00000491719.5:ENST00000476938.5:ENST00000468005.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	55	2	2.9195	4.20914	5.49878	0.0102021	1.52058e-4	0.0850389	0.0106137
chr6	157634975	157635075	3014090	0	+	0.53	(0.515,0.57]	chr6	281295	17	INTRON	INTRON	ZDHHC14	ENSG00000175048.17	ENST00000414563.6:ENST00000359775.10:ENST00000518214.5:ENST00000341375.12:ENST00000340347.7:ENST00000523706.5:ENST00000517432.5:ENST00000422910.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	47	2	3.25412	4.209125	5.16413	0.00224554	8.14815e-4	0.0435144	0.0263656
chr1	46351668	46351768	96787	0	+	0.56	(0.515,0.57]	chr1	13008	42	INTRON	INTRON	NSUN4	ENSG00000117481.11	ENST00000307089.7:ENST00000486270.5:ENST00000474844.6:ENST00000469918.5:ENST00000537428.2:ENST00000498008.5:ENST00000495427.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	98	2	4.18367	4.20896	4.23425	2.93017e-5	1.40595e-5	0.00449807	0.00279379
chrX	113960899	113960999	7867648	0	-	0.51	(0.476,0.515]	chrX	801544	3447	EXON_LNCRNA	EXON_LNCRNA:INTRON	XACT	ENSG00000241743.4	ENST00000468762.3:ENST00000674361.1	lncRNA	lncRNA	lncRNA	lncRNA	1	57	2	2.56868	4.20894	5.8492	0.0256676	8.94204e-5	0.133676	0.00844245
chr3	12567274	12567374	1367979	0	+	0.46	(0.44,0.476]	chr3	144074	90	INTRON	INTRON	MKRN2	ENSG00000075975.17	ENST00000677816.1:ENST00000677941.1:ENST00000676544.1:ENST00000677237.1:ENST00000679143.1:ENST00000676701.1:ENST00000170447.12:ENST00000411987.5:ENST00000448482.1:ENST00000678151.1:ENST00000677142.1:ENST00000676541.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	55	2	3.17572	4.208915	5.24211	0.00427037	4.87398e-4	0.0573912	0.0199652
chr19	15306942	15307042	7147150	0	-	0.35	(0.32,0.35]	chr19	721965	266	INTRON	INTRON	BRD4	ENSG00000141867.19	ENST00000679869.1:ENST00000360016.9:ENST00000594841.5:ENST00000597315.5:ENST00000601941.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	56	2	3.23331	4.20873	5.18415	0.00333629	0.00315414	0.0515261	0.0512081
chr17	30152039	30152137	6587743	0	+	0.346939	(0.32,0.35]	chr17	640567	15	INTRON	INTRON	NSRP1	ENSG00000126653.18	ENST00000540900.7:ENST00000612959.4:ENST00000247026.10:ENST00000577289.6:ENST00000584154.5:ENST00000394826.8:ENST00000475652.5:ENST00000584317.5:ENST00000585881.5:ENST00000467446.6:ENST00000580103.6:ENST00000581048.5:ENST00000588614.1:ENST00000589608.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	56	2	3.13277	4.208635	5.2845	0.00458313	0.00240071	0.0622676	0.0440612
chr20	31765855	31765955	7253929	0	+	0.35	(0.32,0.35]	chr20	736745	53	INTRON	INTRON	TPX2	ENSG00000088325.16	ENST00000340513.4:ENST00000300403.11	protein_coding	protein_coding	protein_coding	protein_coding	1	61	2	2.84812	4.208595	5.56907	0.0147575	2.27532e-4	0.0983813	0.0133228
chr14	103720741	103720840	5828579	0	+	0.525253	(0.515,0.57]	chr14	553163	44	INTRON	INTRON	ZFYVE21	ENSG00000100711.14	ENST00000216602.10:ENST00000554255.5:ENST00000311141.7:ENST00000553512.5:ENST00000554630.5:ENST00000556610.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	48	2	2.98677	4.20848	5.43019	0.00632549	2.60422e-4	0.0722266	0.0148796
chr19	10878907	10879007	7015041	0	+	0.53	(0.515,0.57]	chr19	697070	66	INTRON	INTRON	CARM1	ENSG00000142453.12	ENST00000327064.9:ENST00000588947.5:ENST00000590699.5:ENST00000344150.8:ENST00000586221.5:ENST00000590039.5:ENST00000589693.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	48	2	2.98677	4.20848	5.43019	0.00632549	2.60422e-4	0.0722266	0.0148796
chr1	39852976	39853076	427963	0	-	0.38	(0.378,0.408]	chr1	52006	1	SS3_PROX	SS3_PROX:INTRON	TRIT1	ENSG00000043514.17	ENST00000316891.10:ENST00000648678.1:ENST00000537440.5:ENST00000372818.5:ENST00000462797.5:ENST00000441669.6:ENST00000495175.6:ENST00000491865.5:ENST00000541099.5:ENST00000492612.6:ENST00000489945.5:ENST00000486825.6:ENST00000469476.2:ENST00000462243.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	53	2	3.47377	4.208135	4.9425	0.00452675	0.00103087	0.0595107	0.0294094
chr11	9433269	9433369	4729921	0	+	0.4	(0.378,0.408]	chr11	437917	3	SS3_PROX	SS3_PROX:INTRON	IPO7	ENSG00000205339.10	ENST00000379719.8	protein_coding	protein_coding	protein_coding	protein_coding	2	117	2	4.15483	4.207979999999999	4.26113	6.54278e-5	1.77623e-5	0.00715707	0.00320912
chr10	124780664	124780763	4712435	0	-	0.282828	(0.28,0.32]	chr10	434817	55	INTRON	INTRON	EEF1AKMT2	ENSG00000203791.15	ENST00000652548.1:ENST00000466270.5:ENST00000368836.7:ENST00000464099.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	79	2	2.70831	4.2078500000000005	5.70739	0.00378444	8.32651e-4	0.0562562	0.0266389
chrX	9535034	9535134	7619357	0	+	0.36	(0.35,0.378]	chrX	779952	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	TBL1X	ENSG00000101849.18	ENST00000407597.7:ENST00000380961.5:ENST00000424279.6:ENST00000645353.2:ENST00000422314.5:ENST00000645686.1:ENST00000646640.1:ENST00000647172.1:ENST00000452824.5	protein_coding	protein_coding	protein_coding	protein_coding	4	99	2	2.27866	4.207765	6.13687	0.00316333	5.13037e-5	0.0516574	0.0062158
chr1	201964637	201964735	292434	0	+	0.418367	(0.408,0.44]	chr1	33672	5	INTRON	INTRON	TIMM17A	ENSG00000134375.11	ENST00000367287.5:ENST00000478378.5:ENST00000482943.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	75	2	2.82461	4.20753	5.59045	0.00241819	9.6776e-5	0.0442901	0.00826486
chr1	65364334	65364434	136640	0	+	0.49	(0.476,0.515]	chr1	15359	3	SS3_PROX	SS3_PROX:INTRON	DNAJC6	ENSG00000116675.16	ENST00000463018.5:ENST00000494710.6:ENST00000263441.11:ENST00000395325.7:ENST00000483402.1:ENST00000371069.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	25	2	3.97201	4.206645	4.44128	0.030904	0.0151924	0.143385	0.0994339
chr1	160223658	160223752	571211	0	-	0.478723	(0.476,0.515]	chr1	69129	5	INTRON	INTRON	DCAF8	ENSG00000132716.19	ENST00000326837.6:ENST00000368073.7:ENST00000368074.6:ENST00000477163.1:ENST00000461888.5:ENST00000490368.5:ENST00000466253.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	25	2	3.97201	4.206645	4.44128	0.030904	0.0151924	0.143385	0.0994339
chr10	74162629	74162729	4455879	0	+	0.49	(0.476,0.515]	chr10	411523	109	INTRON	INTRON	ADK	ENSG00000156110.15	ENST00000672429.1:ENST00000539909.6:ENST00000286621.7:ENST00000478611.2:ENST00000673352.1	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	3.97201	4.206645	4.44128	0.030904	0.0151924	0.143385	0.0994339
chr12	12124164	12124264	5269600	0	-	0.48	(0.476,0.515]	chr12	502281	2	SS5_PROX	SS5_PROX:INTRON	LRP6	ENSG00000070018.9	ENST00000261349.9:ENST00000538239.5:ENST00000540527.5:ENST00000543091.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	25	2	3.97201	4.206645	4.44128	0.030904	0.0151924	0.143385	0.0994339
chr2	101841633	101841728	837508	0	+	0.484211	(0.476,0.515]	chr2	93952	13	INTRON	INTRON	MAP4K4	ENSG00000071054.17	ENST00000324219.9:ENST00000350878.9:ENST00000425019.6:ENST00000625522.3:ENST00000413150.6:ENST00000634702.1:ENST00000456652.5:ENST00000347699.8:ENST00000417294.5:ENST00000627726.3:ENST00000476609.1:ENST00000421882.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	25	2	3.97201	4.206645	4.44128	0.030904	0.0151924	0.143385	0.0994339
chr2	105766470	105766570	843905	0	+	0.49	(0.476,0.515]	chr2	94498	202	INTRON	INTRON	NCK2	ENSG00000071051.14	ENST00000233154.9:ENST00000451463.6:ENST00000393348.6	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	3.97201	4.206645	4.44128	0.030904	0.0151924	0.143385	0.0994339
chr2	178128126	178128222	928032	0	+	0.510417	(0.476,0.515]	chr2	101986	16	INTRON	INTRON	RBM45	ENSG00000155636.15	ENST00000424000.6:ENST00000286070.10:ENST00000616198.4:ENST00000455903.6:ENST00000424099.1:ENST00000464647.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	25	2	3.97201	4.206645	4.44128	0.030904	0.0151924	0.143385	0.0994339
chr20	21310843	21310942	7248212	0	+	0.515152	(0.476,0.515]	chr20	735885	70	INTRON	INTRON	XRN2	ENSG00000088930.8	ENST00000377191.5	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	3.97201	4.206645	4.44128	0.030904	0.0151924	0.143385	0.0994339
chr22	35222901	35223001	7580988	0	-	0.5	(0.476,0.515]	chr22	775774	275	INTRON	INTRON	LINC01399	ENSG00000233080.3	ENST00000423311.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	0	25	2	3.97201	4.206645	4.44128	0.030904	0.0151924	0.143385	0.0994339
chr3	42117827	42117927	1404703	0	+	0.51	(0.476,0.515]	chr3	147510	259	INTRON	INTRON	TRAK1	ENSG00000182606.17	ENST00000487159.5:ENST00000672026.1:ENST00000673621.2:ENST00000484786.5:ENST00000327628.10	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	3.97201	4.206645	4.44128	0.030904	0.0151924	0.143385	0.0994339
chr7	102963132	102963232	3591261	0	-	0.5	(0.476,0.515]	chr7	335207	2	SS5_PROX	SS5_PROX:INTRON	FBXL13	ENSG00000161040.18	ENST00000694871.1:ENST00000694870.1:ENST00000448002.6:ENST00000379305.7:ENST00000440067.3:ENST00000456695.6:ENST00000313221.8:ENST00000436908.5:ENST00000455112.7:ENST00000477915.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	25	2	3.97201	4.206645	4.44128	0.030904	0.0151924	0.143385	0.0994339
chr7	103095231	103095330	3373052	0	+	0.484848	(0.476,0.515]	chr7	315679	22	INTRON	INTRON	ARMC10	ENSG00000170632.14	ENST00000441711.6:ENST00000454559.5:ENST00000428183.6:ENST00000541300.5:ENST00000425331.5:ENST00000323735.10:ENST00000306450.5:ENST00000323716.8:ENST00000434153.1:ENST00000431642.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	25	2	3.97201	4.206645	4.44128	0.030904	0.0151924	0.143385	0.0994339
chr8	67049247	67049346	3961708	0	-	0.50505	(0.476,0.515]	chr8	363460	10	INTRON	INTRON	COPS5	ENSG00000121022.14	ENST00000517736.5:ENST00000521509.5:ENST00000357849.9:ENST00000523086.5:ENST00000518374.5:ENST00000521386.5:ENST00000523890.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	25	2	3.97201	4.206645	4.44128	0.030904	0.0151924	0.143385	0.0994339
chr18	51063374	51063472	6901966	0	+	0.377551	(0.35,0.378]	chr18	683882	5	EXON_MRNA	EXON_MRNA:INTRON	SMAD4	ENSG00000141646.15	ENST00000398417.6:ENST00000342988.8:ENST00000611848.2:ENST00000588745.5:ENST00000592186.5:ENST00000591126.5:ENST00000684953.1:ENST00000688307.1:ENST00000688903.1:ENST00000688574.1:ENST00000685232.1:ENST00000685090.1:ENST00000691124.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	72	2	2.87835	4.20653	5.53471	0.00160563	6.96925e-4	0.0367961	0.024224
chr1	176015573	176015673	589780	0	-	0.34	(0.32,0.35]	chr1	70886	257	INTRON	INTRON	COP1	ENSG00000143207.21	ENST00000367669.8:ENST00000367667.5:ENST00000461830.6:ENST00000367666.5:ENST00000649803.1:ENST00000308769.12	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	26	2	3.94529	4.206435	4.46758	0.0693433	0.0119306	0.184298	0.0962115
chr1	214604845	214604944	313550	0	+	0.343434	(0.32,0.35]	chr1	36068	8	INTRON	INTRON	CENPF	ENSG00000117724.14	ENST00000366955.8:ENST00000464322.5:ENST00000495259.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	26	2	3.94529	4.206435	4.46758	0.0693433	0.0119306	0.184298	0.0962115
chr10	68349895	68349995	4638566	0	-	0.35	(0.32,0.35]	chr10	426529	33	INTRON	INTRON	RUFY2	ENSG00000204130.14	ENST00000466493.5:ENST00000484083.5:ENST00000463210.6:ENST00000602465.6:ENST00000388768.6:ENST00000265865.3:ENST00000473398.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	26	2	3.94529	4.206435	4.46758	0.0693433	0.0119306	0.184298	0.0962115
chr10	92880272	92880372	4491934	0	+	0.35	(0.32,0.35]	chr10	413705	313	INTRON	INTRON	EXOC6	ENSG00000138190.17	ENST00000671701.1:ENST00000672817.1:ENST00000371552.8:ENST00000443748.6:ENST00000371543.5:ENST00000260762.10	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	3.94529	4.206435	4.46758	0.0693433	0.0119306	0.184298	0.0962115
chr11	43460222	43460321	4777588	0	+	0.333333	(0.32,0.35]	chr11	441806	86	INTRON	INTRON	TTC17	ENSG00000052841.15	ENST00000039989.9:ENST00000525135.5:ENST00000525543.5:ENST00000533554.1:ENST00000418561.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	26	2	3.94529	4.206435	4.46758	0.0693433	0.0119306	0.184298	0.0962115
chr11	119273367	119273467	4875543	0	+	0.35	(0.32,0.35]	chr11	455681	1	SS3_PROX	SS3_PROX:INTRON	CBL	ENSG00000110395.7	ENST00000634586.1:ENST00000634840.1:ENST00000264033.6:ENST00000637974.1	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	3.94529	4.206435	4.46758	0.0693433	0.0119306	0.184298	0.0962115
chr12	50142610	50142700	5322914	0	-	0.333333	(0.32,0.35]	chr12	507485	1	SS5_PROX	SS5_PROX:INTRON	CERS5	ENSG00000139624.14	ENST00000317551.12:ENST00000422340.6:ENST00000551697.5:ENST00000380189.8:ENST00000547787.5:ENST00000551005.5:ENST00000438450.6:ENST00000542320.5:ENST00000547800.2:ENST00000549089.1:ENST00000548930.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	26	2	3.94529	4.206435	4.46758	0.0693433	0.0119306	0.184298	0.0962115
chr13	99518758	99518854	5527047	0	+	0.322917	(0.32,0.35]	chr13	528341	7	INTRON	INTRON	TM9SF2	ENSG00000125304.10	ENST00000642475.1:ENST00000376387.5:ENST00000463709.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	26	2	3.94529	4.206435	4.46758	0.0693433	0.0119306	0.184298	0.0962115
chr15	57264470	57264569	6035601	0	+	0.343434	(0.32,0.35]	chr15	574799	8	INTRON	INTRON	TCF12	ENSG00000140262.18	ENST00000438423.6:ENST00000267811.9:ENST00000333725.10:ENST00000560190.5:ENST00000559609.5:ENST00000557843.5:ENST00000543579.5:ENST00000537840.5:ENST00000343827.7:ENST00000559710.5:ENST00000559703.1:ENST00000561420.5:ENST00000561449.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	26	2	3.94529	4.206435	4.46758	0.0693433	0.0119306	0.184298	0.0962115
chr15	92963042	92963142	6104344	0	+	0.33	(0.32,0.35]	chr15	581492	60	INTRON	INTRON	CHD2	ENSG00000173575.22	ENST00000626874.2:ENST00000394196.9:ENST00000635856.1:ENST00000625990.3:ENST00000637572.1:ENST00000636881.1:ENST00000628181.1:ENST00000627200.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	26	2	3.94529	4.206435	4.46758	0.0693433	0.0119306	0.184298	0.0962115
chr16	5075210	5075298	6284096	0	+	0.340909	(0.32,0.35]	chr16	601658	3	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	ALG1	ENSG00000033011.14	ENST00000682327.1:ENST00000650085.1:ENST00000682020.1:ENST00000682985.1:ENST00000683433.1:ENST00000588623.5:ENST00000682206.1:ENST00000682797.1:ENST00000684190.1:ENST00000684335.1:ENST00000683772.1:ENST00000682314.1:ENST00000683685.1:ENST00000586840.1:ENST00000683710.1:ENST00000262374.10:ENST00000682349.1:ENST00000592793.6:ENST00000682703.1:ENST00000591822.5:ENST00000684008.1:ENST00000591783.5:ENST00000544428.1:ENST00000683739.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	26	2	3.94529	4.206435	4.46758	0.0693433	0.0119306	0.184298	0.0962115
chr17	48073825	48073922	6790400	0	-	0.329897	(0.32,0.35]	chr17	669880	19	INTRON	INTRON	CBX1	ENSG00000108468.15	ENST00000393408.7:ENST00000225603.9:ENST00000581003.5:ENST00000402583.5	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	3.94529	4.206435	4.46758	0.0693433	0.0119306	0.184298	0.0962115
chr19	21033717	21033806	7039244	0	+	0.337079	(0.32,0.35]	chr19	701850	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ZNF430	ENSG00000118620.13	ENST00000599548.5:ENST00000594110.5:ENST00000261560.10:ENST00000595401.1	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	3.94529	4.206435	4.46758	0.0693433	0.0119306	0.184298	0.0962115
chr2	178223234	178223334	928432	0	+	0.34	(0.32,0.35]	chr2	102003	282	INTRON	INTRON	OSBPL6	ENSG00000079156.17	ENST00000359685.7:ENST00000392505.6:ENST00000477646.1:ENST00000357080.8:ENST00000190611.9:ENST00000409045.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	26	2	3.94529	4.206435	4.46758	0.0693433	0.0119306	0.184298	0.0962115
chr2	187465582	187465678	1288621	0	-	0.34375	(0.32,0.35]	chr2	135559	15	UTR3	UTR3:EXON_MRNA	TFPI	ENSG00000003436.16	ENST00000233156.9:ENST00000392365.5	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	3.94529	4.206435	4.46758	0.0693433	0.0119306	0.184298	0.0962115
chr3	100275148	100275248	1465709	0	+	0.35	(0.32,0.35]	chr3	153594	75	INTRON	INTRON	TBC1D23	ENSG00000036054.13	ENST00000394144.9:ENST00000485687.5:ENST00000344949.9:ENST00000486274.5:ENST00000471098.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	26	2	3.94529	4.206435	4.46758	0.0693433	0.0119306	0.184298	0.0962115
chr3	179433640	179433740	1878722	0	-	0.33	(0.32,0.35]	chr3	187694	70	INTRON	INTRON	GNB4	ENSG00000114450.11	ENST00000232564.8:ENST00000676128.1:ENST00000674862.1:ENST00000675901.1:ENST00000497513.1	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	3.94529	4.206435	4.46758	0.0693433	0.0119306	0.184298	0.0962115
chr5	127526978	127527078	2479890	0	+	0.33	(0.32,0.35]	chr5	236791	2	SS5_PROX	SS5_PROX:INTRON	PRRC1	ENSG00000164244.21	ENST00000296666.13:ENST00000442138.6:ENST00000512635.2	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	3.94529	4.206435	4.46758	0.0693433	0.0119306	0.184298	0.0962115
chr8	73672084	73672183	3970166	0	-	0.323232	(0.32,0.35]	chr8	364137	26	INTRON	INTRON	STAU2	ENSG00000040341.18	ENST00000524300.6:ENST00000522695.5:ENST00000523558.5:ENST00000521210.5:ENST00000355780.9:ENST00000519961.5:ENST00000521727.5:ENST00000521451.5:ENST00000522509.5:ENST00000517542.5:ENST00000518981.5:ENST00000518767.5:ENST00000518502.5:ENST00000521293.5:ENST00000521447.5:ENST00000524104.5:ENST00000522962.5:ENST00000521419.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	26	2	3.94529	4.206435	4.46758	0.0693433	0.0119306	0.184298	0.0962115
chr9	128189828	128189928	4357836	0	-	0.35	(0.32,0.35]	chr9	400306	1	SS5_PROX	SS5_PROX:INTRON	CIZ1	ENSG00000148337.22	ENST00000651955.1:ENST00000372938.10:ENST00000372954.5:ENST00000538431.5:ENST00000357558.9:ENST00000629610.2:ENST00000372948.7:ENST00000277465.8:ENST00000634901.1:ENST00000415526.5:ENST00000476727.6:ENST00000488559.6:ENST00000467178.5:ENST00000491954.5:ENST00000498156.5:ENST00000324544.6:ENST00000474442.1:ENST00000420484.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	26	2	3.94529	4.206435	4.46758	0.0693433	0.0119306	0.184298	0.0962115
chrX	110036829	110036929	7700375	0	+	0.33	(0.32,0.35]	chrX	788130	323	INTRON	INTRON	TMEM164	ENSG00000157600.12	ENST00000372072.7:ENST00000471255.5:ENST00000372073.5:ENST00000372068.7:ENST00000288381.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	26	2	3.94529	4.206435	4.46758	0.0693433	0.0119306	0.184298	0.0962115
chr11	68492666	68492766	4817652	0	+	0.44	(0.408,0.44]	chr11	448907	315	INTRON	INTRON	PPP6R3	ENSG00000110075.15	ENST00000530427.5:ENST00000528635.5:ENST00000529907.5:ENST00000533127.5:ENST00000534534.5:ENST00000529344.5:ENST00000524845.5:ENST00000393800.7:ENST00000265637.8:ENST00000524904.5:ENST00000393801.7:ENST00000265636.9:ENST00000529710.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	69	2	3.01942	4.20631	5.3932	7.81492e-4	7.74413e-4	0.0257168	0.0256083
chr7	135448515	135448615	3648345	0	-	0.44	(0.408,0.44]	chr7	339187	97	INTRON	INTRON	CNOT4	ENSG00000080802.20	ENST00000541284.6:ENST00000451834.5:ENST00000423368.6:ENST00000361528.8:ENST00000428680.6:ENST00000315544.6:ENST00000491203.5:ENST00000498534.5:ENST00000465721.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	69	2	3.01942	4.20631	5.3932	7.81492e-4	7.74413e-4	0.0257168	0.0256083
chr2	15527144	15527244	1072820	0	-	0.29	(0.28,0.32]	chr2	114441	154	INTRON	INTRON	NBAS	ENSG00000151779.13	ENST00000281513.10	protein_coding	protein_coding	protein_coding	protein_coding	1	61	2	3.54514	4.206225	4.86731	0.0116253	0.00100603	0.0889104	0.0292285
chr13	114284883	114284979	5550859	0	+	0.59375	(0.57,1]	chr13	530559	13	INTRON	INTRON	UPF3A	ENSG00000169062.15	ENST00000375299.8:ENST00000351487.5:ENST00000484246.5:ENST00000480362.5:ENST00000474056.5:ENST00000493727.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	116	2	3.73036	4.20618	4.682	2.14035e-7	9.65777e-8	2.19884e-4	1.38228e-4
chr1	220020621	220020721	638926	0	-	0.35	(0.32,0.35]	chr1	75283	4	SS3_PROX	SS3_PROX:INTRON	EPRS1	ENSG00000136628.18	ENST00000366923.8:ENST00000609181.5:ENST00000477030.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	56	2	3.28107	4.20615	5.13123	0.00394704	0.00262488	0.0548259	0.0470772
chr1	22454943	22455043	42970	0	+	0.38	(0.378,0.408]	chr1	5144	16	INTRON	INTRON	ZBTB40	ENSG00000184677.18	ENST00000650433.1:ENST00000404138.5:ENST00000374651.8:ENST00000375647.5:ENST00000400239.6	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	3.98867	4.20608	4.42349	0.0507	0.00992961	0.156383	0.0877296
chr1	202423334	202423430	293508	0	+	0.385417	(0.378,0.408]	chr1	33770	2	INTRON	INTRON	PPP1R12B	ENSG00000077157.22	ENST00000391959.5:ENST00000608999.6:ENST00000480184.5:ENST00000356764.6:ENST00000476364.5:ENST00000466968.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	25	2	3.98867	4.20608	4.42349	0.0507	0.00992961	0.156383	0.0877296
chr1	227280006	227280106	651336	0	-	0.38	(0.378,0.408]	chr1	77110	149	INTRON	INTRON	CDC42BPA	ENSG00000143776.20	ENST00000366766.8:ENST00000366769.7:ENST00000334218.9:ENST00000366767.7:ENST00000366764.8:ENST00000478573.6:ENST00000682551.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	25	2	3.98867	4.20608	4.42349	0.0507	0.00992961	0.156383	0.0877296
chr11	62819366	62819466	4961593	0	-	0.38	(0.378,0.408]	chr11	466978	34	INTRON	INTRON	STX5	ENSG00000162236.13	ENST00000294179.8:ENST00000377897.8:ENST00000394690.5:ENST00000492066.5:ENST00000491231.5:ENST00000677401.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	25	2	3.98867	4.20608	4.42349	0.0507	0.00992961	0.156383	0.0877296
chr11	64217961	64218060	4802363	0	+	0.40404	(0.378,0.408]	chr11	445346	59	INTRON	INTRON	FERMT3	ENSG00000149781.13	ENST00000544997.5:ENST00000345728.10:ENST00000279227.9:ENST00000541326.5:ENST00000546255.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	25	2	3.98867	4.20608	4.42349	0.0507	0.00992961	0.156383	0.0877296
chr15	27228654	27228754	5984730	0	+	0.4	(0.378,0.408]	chr15	569164	2015	INTRON	INTRON	GABRG3	ENSG00000182256.13	ENST00000615808.5:ENST00000555083.5	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	3.98867	4.20608	4.42349	0.0507	0.00992961	0.156383	0.0877296
chr15	42507569	42507668	6009720	0	+	0.383838	(0.378,0.408]	chr15	572147	20	INTRON	INTRON	SNAP23	ENSG00000092531.10	ENST00000568745.5:ENST00000561526.5:ENST00000568227.5:ENST00000568451.5:ENST00000563765.5:ENST00000349777.5:ENST00000249647.8:ENST00000564153.5:ENST00000567094.5:ENST00000566327.5:ENST00000568331.5:ENST00000563451.1:ENST00000626061.2:ENST00000627440.2:ENST00000566035.5:ENST00000568859.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	25	2	3.98867	4.20608	4.42349	0.0507	0.00992961	0.156383	0.0877296
chr15	44716636	44716734	6015719	0	+	0.387755	(0.378,0.408]	chr15	573072	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	B2M	ENSG00000166710.23	ENST00000695792.1:ENST00000559720.5:ENST00000561424.5:ENST00000559916.1:ENST00000648006.3:ENST00000349264.10:ENST00000557901.5:ENST00000559907.5:ENST00000561139.1:ENST00000560556.1:ENST00000623550.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	25	2	3.98867	4.20608	4.42349	0.0507	0.00992961	0.156383	0.0877296
chr19	11016511	11016611	7016139	0	+	0.38	(0.378,0.408]	chr19	697272	30	INTRON	INTRON	SMARCA4	ENSG00000127616.20	ENST00000644737.1:ENST00000642726.1:ENST00000646484.1:ENST00000643549.1:ENST00000643296.1:ENST00000647230.1:ENST00000642628.1:ENST00000646510.1:ENST00000429416.8:ENST00000344626.10:ENST00000646693.2:ENST00000645460.1:ENST00000541122.6:ENST00000589677.5:ENST00000444061.8:ENST00000590574.6:ENST00000591545.6:ENST00000643995.1:ENST00000644327.1:ENST00000644065.1:ENST00000644963.1:ENST00000643208.1:ENST00000645061.1:ENST00000642350.1:ENST00000644290.1:ENST00000647268.1:ENST00000643857.1:ENST00000644267.1:ENST00000646183.1:ENST00000646746.1:ENST00000643534.1:ENST00000646513.1:ENST00000646593.1:ENST00000645648.1:ENST00000592604.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	25	2	3.98867	4.20608	4.42349	0.0507	0.00992961	0.156383	0.0877296
chr21	25593310	25593392	7435516	0	-	0.390244	(0.378,0.408]	chr21	758157	4	SS3_PROX	SS3_PROX:INTRON	MRPL39	ENSG00000154719.14	ENST00000307301.11:ENST00000352957.9:ENST00000419219.1	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	3.98867	4.20608	4.42349	0.0507	0.00992961	0.156383	0.0877296
chr4	166556	166656	1906068	0	+	0.38	(0.378,0.408]	chr4	191038	25	INTRON	INTRON	ZNF718	ENSG00000250312.8	ENST00000642529.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	0	25	2	3.98867	4.20608	4.42349	0.0507	0.00992961	0.156383	0.0877296
chr4	150379987	150380087	2265356	0	-	0.4	(0.378,0.408]	chr4	220639	257	INTRON	INTRON	LRBA	ENSG00000198589.14	ENST00000357115.9:ENST00000651943.2:ENST00000510413.5:ENST00000503716.5:ENST00000509835.5:ENST00000648823.1:ENST00000648626.1:ENST00000651695.1:ENST00000648878.1:ENST00000651035.1:ENST00000507224.5:ENST00000649874.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	25	2	3.98867	4.20608	4.42349	0.0507	0.00992961	0.156383	0.0877296
chr5	75344750	75344841	2390913	0	+	0.461538	(0.44,0.476]	chr5	230922	2	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	HMGCR	ENSG00000113161.17	ENST00000511206.5:ENST00000679456.1:ENST00000680160.1:ENST00000287936.9:ENST00000681567.1:ENST00000343975.9:ENST00000680940.1:ENST00000681271.1:ENST00000681410.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	187	2	4.1177	4.20608	4.29446	2.62765e-5	1.12129e-7	0.0042413	1.48683e-4
chr5	79636060	79636159	2398968	0	+	0.393939	(0.378,0.408]	chr5	231707	122	INTRON	INTRON	TENT2	ENSG00000164329.14	ENST00000423041.6:ENST00000504233.5:ENST00000453514.6:ENST00000428308.6:ENST00000296783.7	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	3.98867	4.20608	4.42349	0.0507	0.00992961	0.156383	0.0877296
chr5	109367073	109367172	2701937	0	-	0.383838	(0.378,0.408]	chr5	254334	37	INTRON	INTRON	PJA2	ENSG00000198961.10	ENST00000361557.4:ENST00000361189.7	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	3.98867	4.20608	4.42349	0.0507	0.00992961	0.156383	0.0877296
chrX	24828197	24828296	7633071	0	+	0.383838	(0.378,0.408]	chrX	781777	12	INTRON	INTRON	POLA1	ENSG00000101868.13	ENST00000672178.1:ENST00000379068.8:ENST00000379059.7:ENST00000611764.2:ENST00000679301.1:ENST00000494204.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	25	2	3.98867	4.20608	4.42349	0.0507	0.00992961	0.156383	0.0877296
chr1	227247872	227247972	651013	0	-	0.24	[0,0.28]	chr1	77102	281	INTRON	INTRON	CDC42BPA	ENSG00000143776.20	ENST00000366766.8:ENST00000366769.7:ENST00000334218.9:ENST00000366767.7:ENST00000366764.8:ENST00000478573.6:ENST00000682551.1:ENST00000462553.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	95	2	2.45904	4.206065000000001	5.95309	0.0137145	1.4134e-4	0.0949306	0.0102551
chr4	119440955	119441054	2230567	0	-	0.424242	(0.408,0.44]	chr4	218509	5	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO:SS3_ADJ:SS3_PROX:INTRON	GTF2IP12	ENSG00000283050.3	ENST00000634317.1:ENST00000456547.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	2	69	2	2.64829	4.20603	5.76377	0.00400062	1.64089e-4	0.057767	0.0116917
chr2	111241185	111241283	1209248	0	-	0.336735	(0.32,0.35]	chr2	128823	8	INTRON	INTRON	MIR4435-2HG	ENSG00000172965.17	ENST00000645030.2:ENST00000642191.1:ENST00000673798.1:ENST00000645051.2:ENST00000673649.1:ENST00000673962.1:ENST00000674132.1:ENST00000669658.1:ENST00000669917.1:ENST00000661559.1:ENST00000653687.1:ENST00000667670.1:ENST00000609220.2:ENST00000656760.1:ENST00000609902.6:ENST00000666683.1:ENST00000674070.1:ENST00000662335.1:ENST00000664422.1:ENST00000673775.1:ENST00000662889.1:ENST00000665096.1:ENST00000674092.1:ENST00000673958.1:ENST00000673770.1:ENST00000673961.1:ENST00000658936.1:ENST00000662635.1:ENST00000666204.1:ENST00000659458.1:ENST00000664443.1:ENST00000670295.1:ENST00000661655.1:ENST00000666390.1:ENST00000659079.1:ENST00000660442.1:ENST00000664009.1:ENST00000439362.6:ENST00000654473.1:ENST00000664999.1:ENST00000673728.1:ENST00000659791.1:ENST00000666144.1:ENST00000659933.1:ENST00000670715.1:ENST00000656303.1:ENST00000666367.1:ENST00000666652.1:ENST00000669050.1:ENST00000667218.1:ENST00000656067.1:ENST00000653568.1:ENST00000643013.1:ENST00000673866.1:ENST00000673700.1:ENST00000443467.6:ENST00000451884.6:ENST00000669875.1:ENST00000673653.1:ENST00000673988.1:ENST00000661945.1:ENST00000669515.1:ENST00000431385.6:ENST00000655573.1	lncRNA	lncRNA	lncRNA	lncRNA	1	56	2	3.07975	4.205965	5.33218	0.00554235	0.00204346	0.0674105	0.04086
chr22	26566523	26566623	7564832	0	-	0.34	(0.32,0.35]	chr22	774054	9	INTRON	INTRON	TPST2	ENSG00000128294.16	ENST00000338754.9:ENST00000403880.5:ENST00000442495.5:ENST00000440953.5:ENST00000450022.1	protein_coding	protein_coding	protein_coding	protein_coding	1	56	2	3.07975	4.205965	5.33218	0.00554235	0.00204346	0.0674105	0.04086
chr1	227291205	227291305	651448	0	-	0.51	(0.476,0.515]	chr1	77110	261	INTRON	INTRON	CDC42BPA	ENSG00000143776.20	ENST00000366766.8:ENST00000366769.7:ENST00000334218.9:ENST00000366767.7:ENST00000366764.8:ENST00000478573.6:ENST00000682551.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	55	2	3.29074	4.20573	5.12072	0.00272563	8.42139e-4	0.0467523	0.0263691
chr1	28508270	28508329	57193	0	+	0.372881	(0.35,0.378]	chr1	7383	1	SS5_PROX	SS5_PROX:INTRON	RCC1:SNHG3	ENSG00000180198.17:ENSG00000242125.3	ENST00000398958.6:ENST00000649185.1:ENST00000413987.1:ENST00000427469.5:ENST00000683442.1:ENST00000434290.6:ENST00000373833.10:ENST00000437681.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	41	1893	2	3.69683	4.20571	4.71459	6.38647e-9	1e-12	2.03973e-5	5.45623e-8
chr10	6209427	6209527	4386640	0	+	0.33	(0.32,0.35]	chr10	404839	57	INTRON	INTRON	PFKFB3	ENSG00000170525.21	ENST00000379789.8:ENST00000536985.6:ENST00000639949.1:ENST00000379785.5:ENST00000490474.5:ENST00000477914.5:ENST00000467491.5:ENST00000461744.5:ENST00000317350.8:ENST00000626882.2:ENST00000625260.2:ENST00000360521.7:ENST00000640683.1:ENST00000379775.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	26	2	4.04364	4.205595	4.36755	0.034181	0.0300552	0.146815	0.129138
chr11	31480941	31481041	4938953	0	-	0.34	(0.32,0.35]	chr11	462597	28	INTRON	INTRON	IMMP1L	ENSG00000148950.11	ENST00000532287.6:ENST00000534812.5:ENST00000526776.5:ENST00000278200.5:ENST00000648582.1:ENST00000533642.1:ENST00000527184.5:ENST00000528161.5:ENST00000532624.5:ENST00000529749.5:ENST00000530023.5:ENST00000531693.1:ENST00000532668.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	26	2	4.04364	4.205595	4.36755	0.034181	0.0300552	0.146815	0.129138
chr11	66081883	66081983	4807984	0	+	0.35	(0.32,0.35]	chr11	447330	107	INTRON	INTRON	PACS1	ENSG00000175115.13	ENST00000320580.9:ENST00000527224.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	26	2	4.04364	4.205595	4.36755	0.034181	0.0300552	0.146815	0.129138
chr14	91224487	91224583	5806797	0	+	0.333333	(0.32,0.35]	chr14	550299	3	SS3_PROX	SS3_PROX:INTRON	DGLUCY	ENSG00000133943.21	ENST00000520328.5:ENST00000256324.15:ENST00000521077.6:ENST00000523837.5:ENST00000518868.5:ENST00000523816.5:ENST00000428926.6:ENST00000522322.5:ENST00000523771.5:ENST00000525393.6:ENST00000412671.6:ENST00000523461.5:ENST00000517306.5:ENST00000523576.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	26	2	4.04364	4.205595	4.36755	0.034181	0.0300552	0.146815	0.129138
chr16	69671280	69671379	6381075	0	+	0.333333	(0.32,0.35]	chr16	613222	6	INTRON	INTRON	NFAT5	ENSG00000102908.22	ENST00000426654.6:ENST00000349945.7:ENST00000354436.6:ENST00000627621.3:ENST00000650987.1:ENST00000567990.5:ENST00000567239.5:ENST00000393742.7:ENST00000565301.2:ENST00000566899.6:ENST00000563474.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	26	2	4.04364	4.205595	4.36755	0.034181	0.0300552	0.146815	0.129138
chr17	35589829	35589928	6599558	0	+	0.323232	(0.32,0.35]	chr17	642225	7	INTRON	INTRON	AP2B1	ENSG00000006125.18	ENST00000589774.5:ENST00000616784.4:ENST00000621914.4:ENST00000620039.4:ENST00000616681.4:ENST00000621668.4:ENST00000610402.5:ENST00000612035.4:ENST00000591610.5:ENST00000590538.5:ENST00000614600.4:ENST00000590432.5:ENST00000612116.5:ENST00000618940.4:ENST00000588093.1:ENST00000592167.5:ENST00000593014.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	26	2	4.04364	4.205595	4.36755	0.034181	0.0300552	0.146815	0.129138
chr2	43794064	43794162	764371	0	+	0.346939	(0.32,0.35]	chr2	86631	14	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	DYNC2LI1	ENSG00000138036.18	ENST00000260605.12:ENST00000479242.5:ENST00000406852.7:ENST00000489222.6:ENST00000398823.6:ENST00000605786.5:ENST00000462426.1:ENST00000378587.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	26	2	4.04364	4.205595	4.36755	0.034181	0.0300552	0.146815	0.129138
chr2	214807012	214807111	1326162	0	-	0.333333	(0.32,0.35]	chr2	138639	95	INTRON	INTRON	BARD1	ENSG00000138376.11	ENST00000260947.9:ENST00000617164.5:ENST00000619009.5:ENST00000613374.5:ENST00000613706.5:ENST00000421162.2:ENST00000613192.2:ENST00000620057.4:ENST00000455743.5:ENST00000471787.1:ENST00000479904.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	26	2	4.04364	4.205595	4.36755	0.034181	0.0300552	0.146815	0.129138
chr3	15755088	15755187	1623390	0	-	0.323232	(0.32,0.35]	chr3	167999	29	INTRON	INTRON	ANKRD28	ENSG00000206560.12	ENST00000399451.6:ENST00000624145.3:ENST00000683139.1:ENST00000412318.5:ENST00000497037.5:ENST00000451422.1:ENST00000498524.5:ENST00000476472.5:ENST00000460278.5:ENST00000439830.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	26	2	4.04364	4.205595	4.36755	0.034181	0.0300552	0.146815	0.129138
chr7	128311717	128311813	3634921	0	-	0.322917	(0.32,0.35]	chr7	337822	4	INTRON	INTRON	RBM28	ENSG00000106344.8	ENST00000223073.6:ENST00000481788.1:ENST00000415472.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	26	2	4.04364	4.205595	4.36755	0.034181	0.0300552	0.146815	0.129138
chr8	125277453	125277553	3855348	0	+	0.35	(0.32,0.35]	chr8	355249	948	INTRON	INTRON	NSMCE2	ENSG00000156831.8	ENST00000517532.5:ENST00000287437.8:ENST00000522563.5:ENST00000517315.1	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.04364	4.205595	4.36755	0.034181	0.0300552	0.146815	0.129138
chrX	24835471	24835570	7633144	0	+	0.323232	(0.32,0.35]	chrX	781777	85	INTRON	INTRON	POLA1	ENSG00000101868.13	ENST00000672178.1:ENST00000379068.8:ENST00000379059.7:ENST00000611764.2:ENST00000679301.1:ENST00000494204.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	26	2	4.04364	4.205595	4.36755	0.034181	0.0300552	0.146815	0.129138
chr4	55632925	55633024	2150666	0	-	0.242424	[0,0.28]	chr4	211642	21	INTRON	INTRON	NMU	ENSG00000109255.11	ENST00000511469.5:ENST00000264218.7:ENST00000505262.5:ENST00000507338.1:ENST00000515325.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	64	2	3.30083	4.20558	5.11033	0.00991388	0.00319246	0.0838372	0.0520345
chr13	40754987	40755086	5576477	0	-	0.383838	(0.378,0.408]	chr13	533119	5	INTRON	INTRON	MRPS31	ENSG00000102738.8	ENST00000323563.8	protein_coding	protein_coding	protein_coding	protein_coding	1	58	2	3.35998	4.205445	5.05091	0.00230615	0.00118558	0.0428247	0.031662
chr2	131149156	131149256	864848	0	+	0.41	(0.408,0.44]	chr2	97171	25	UTR3	UTR3:EXON_MRNA:INTRON	PLEKHB2	ENSG00000115762.17	ENST00000403716.5:ENST00000439822.6:ENST00000234115.10:ENST00000693505.1:ENST00000404460.5	protein_coding	protein_coding	protein_coding	protein_coding	4	94	2	2.47605	4.205415	5.93478	0.00116417	7.42058e-5	0.0314524	0.00770735
chr11	78124024	78124124	4998182	0	-	0.39	(0.378,0.408]	chr11	472365	1	CDS_START	CDS_START:CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	ALG8	ENSG00000159063.14	ENST00000679559.1:ENST00000680398.1:ENST00000681221.1:ENST00000527099.2:ENST00000681489.1:ENST00000525783.6:ENST00000529139.6:ENST00000680761.1:ENST00000525870.6:ENST00000680866.1:ENST00000680223.1:ENST00000526737.6:ENST00000681575.1:ENST00000299626.10:ENST00000680467.1:ENST00000679497.1:ENST00000681351.1:ENST00000679697.1:ENST00000680580.1:ENST00000526849.6:ENST00000680256.1:ENST00000680797.1:ENST00000681723.1:ENST00000680142.1:ENST00000679685.1:ENST00000681384.1:ENST00000679874.1:ENST00000679444.1:ENST00000680459.1:ENST00000681699.1:ENST00000679986.1:ENST00000680063.1:ENST00000530608.6:ENST00000681765.1:ENST00000681225.1:ENST00000681417.1:ENST00000530910.6:ENST00000680329.1:ENST00000679581.1:ENST00000524925.2:ENST00000681853.1:ENST00000376156.7:ENST00000679648.1:ENST00000680101.1:ENST00000680829.1:ENST00000680499.1:ENST00000525761.3:ENST00000532440.6:ENST00000680996.1:ENST00000532306.6:ENST00000680399.1:ENST00000679539.1:ENST00000615266.5:ENST00000681957.1:ENST00000532552.2:ENST00000680643.1:ENST00000530454.6:ENST00000525755.6:ENST00000532050.5:ENST00000680650.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	25	2	4.09379	4.2053899999999995	4.31699	0.0250408	0.023912	0.129075	0.12011
chr11	108737898	108737998	4859375	0	+	0.4	(0.378,0.408]	chr11	453510	32	INTRON	INTRON	DDX10	ENSG00000178105.12	ENST00000693015.1:ENST00000690021.1:ENST00000686283.1:ENST00000322536.8:ENST00000648124.1:ENST00000688583.1:ENST00000688536.1:ENST00000686617.1:ENST00000688976.1:ENST00000687072.1:ENST00000526794.1:ENST00000692839.1:ENST00000689812.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	25	2	4.09379	4.2053899999999995	4.31699	0.0250408	0.023912	0.129075	0.12011
chr14	19064893	19064993	5655045	0	+	0.39	(0.378,0.408]	chr14	538990	2	SS5_PROX	SS5_PROX:INTRON	DUXAP9	ENSG00000225210.10	ENST00000549484.5:ENST00000547220.5:ENST00000610585.4:ENST00000621361.4:ENST00000620237.1:ENST00000619938.1:ENST00000644980.1:ENST00000619210.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	0	25	2	4.09379	4.2053899999999995	4.31699	0.0250408	0.023912	0.129075	0.12011
chr19	34256108	34256208	7051401	0	+	0.38	(0.378,0.408]	chr19	703250	11	INTRON	INTRON	GARRE1	ENSG00000166398.14	ENST00000588470.5:ENST00000299505.8:ENST00000589583.5:ENST00000588338.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	25	2	4.09379	4.2053899999999995	4.31699	0.0250408	0.023912	0.129075	0.12011
chr2	44437493	44437593	766095	0	+	0.38	(0.378,0.408]	chr2	86775	365	INTRON	INTRON	CAMKMT	ENSG00000143919.15	ENST00000378494.8:ENST00000402247.5:ENST00000407131.5:ENST00000403853.7:ENST00000428993.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	25	2	4.09379	4.2053899999999995	4.31699	0.0250408	0.023912	0.129075	0.12011
chr3	33582619	33582715	1652620	0	-	0.385417	(0.378,0.408]	chr3	169539	3	INTRON	INTRON	CLASP2	ENSG00000163539.18	ENST00000399362.8:ENST00000682230.1:ENST00000468888.6:ENST00000359576.9:ENST00000650653.1:ENST00000480013.6:ENST00000461133.8:ENST00000635664.1:ENST00000475576.1	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	4.09379	4.2053899999999995	4.31699	0.0250408	0.023912	0.129075	0.12011
chr3	197076027	197076085	1901253	0	-	0.37931	(0.378,0.408]	chr3	190521	2	SS3_PROX	SS3_PROX:INTRON	DLG1	ENSG00000075711.21	ENST00000667157.1:ENST00000346964.6:ENST00000656428.1:ENST00000663148.1:ENST00000655488.1:ENST00000357674.9:ENST00000671185.1:ENST00000658701.1:ENST00000667104.1:ENST00000661336.1:ENST00000669565.1:ENST00000670455.1:ENST00000656087.1:ENST00000670366.1:ENST00000653583.1:ENST00000653795.1:ENST00000671246.1:ENST00000661453.1:ENST00000665728.1:ENST00000664564.1:ENST00000653331.1:ENST00000660432.1:ENST00000660898.1:ENST00000657381.1:ENST00000659221.1:ENST00000654737.1:ENST00000669332.1:ENST00000659716.1:ENST00000660553.1:ENST00000664991.1:ENST00000419354.5:ENST00000661440.1:ENST00000667971.1:ENST00000670935.1:ENST00000668578.1:ENST00000666007.1:ENST00000661229.1:ENST00000660237.1:ENST00000657098.1:ENST00000661013.1:ENST00000436682.6:ENST00000452595.5:ENST00000662727.1:ENST00000422288.6:ENST00000448528.6:ENST00000443183.5:ENST00000656944.1:ENST00000392382.6:ENST00000450955.5:ENST00000658155.1:ENST00000669714.1:ENST00000654733.1:ENST00000469073.2:ENST00000419227.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	25	2	4.09379	4.2053899999999995	4.31699	0.0250408	0.023912	0.129075	0.12011
chr7	65891942	65892041	3323064	0	+	0.393939	(0.378,0.408]	chr7	309012	180	INTRON	INTRON	VKORC1L1	ENSG00000196715.7	ENST00000360768.5:ENST00000648187.1:ENST00000648179.1:ENST00000434382.2	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	4.09379	4.2053899999999995	4.31699	0.0250408	0.023912	0.129075	0.12011
chr7	139693855	139693955	3657993	0	-	0.4	(0.378,0.408]	chr7	339537	618	INTRON	INTRON	HIPK2	ENSG00000064393.16	ENST00000406875.8:ENST00000428878.6:ENST00000342645.7	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	4.09379	4.2053899999999995	4.31699	0.0250408	0.023912	0.129075	0.12011
chr9	70354188	70354286	4140149	0	+	0.408163	(0.378,0.408]	chr9	377355	20	UTR3	UTR3:EXON_MRNA	SMC5	ENSG00000198887.9	ENST00000361138.7	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	4.09379	4.2053899999999995	4.31699	0.0250408	0.023912	0.129075	0.12011
chrX	113961199	113961299	7867651	0	-	0.39	(0.378,0.408]	chrX	801544	3450	EXON_LNCRNA	EXON_LNCRNA:INTRON	XACT	ENSG00000241743.4	ENST00000468762.3:ENST00000674361.1	lncRNA	lncRNA	lncRNA	lncRNA	0	25	2	4.09379	4.2053899999999995	4.31699	0.0250408	0.023912	0.129075	0.12011
chr3	13415159	13415259	1618550	0	-	0.51	(0.476,0.515]	chr3	167237	149	INTRON	INTRON	NUP210	ENSG00000132182.13	ENST00000254508.7:ENST00000420141.3:ENST00000695492.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	56	2	3.41728	4.20535	4.99342	0.00165726	0.00139274	0.0369207	0.0341261
chr9	37199841	37199941	4118455	0	+	0.53	(0.515,0.57]	chr9	375389	129	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000461038.5:ENST00000488607.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	66	2	2.84387	4.205019999999999	5.56617	0.0018149	5.44229e-5	0.0384415	0.00603408
chr11	118654720	118654819	4873928	0	+	0.474747	(0.44,0.476]	chr11	455352	43	EXON_MRNA	EXON_MRNA:INTRON	PHLDB1	ENSG00000019144.20	ENST00000361417.6:ENST00000530994.5:ENST00000600882.6:ENST00000528594.5:ENST00000356063.9:ENST00000532517.5:ENST00000614369.4:ENST00000527898.5:ENST00000534140.2:ENST00000524713.5:ENST00000526537.2:ENST00000620788.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	25	2	3.97626	4.2050149999999995	4.43377	0.0300538	0.0162803	0.142135	0.101453
chr12	1696500	1696600	5064222	0	+	0.47	(0.44,0.476]	chr12	477860	49	INTRON	INTRON	ADIPOR2	ENSG00000006831.10	ENST00000537545.1:ENST00000357103.5:ENST00000540974.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	25	2	3.97626	4.2050149999999995	4.43377	0.0300538	0.0162803	0.142135	0.101453
chr17	8493289	8493378	6720622	0	-	0.449438	(0.44,0.476]	chr17	659501	4	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MYH10	ENSG00000133026.14	ENST00000379980.8:ENST00000269243.8:ENST00000688902.1:ENST00000684843.1:ENST00000687178.1:ENST00000692526.1:ENST00000688497.1:ENST00000685418.1:ENST00000693441.1:ENST00000686654.1:ENST00000360416.8:ENST00000691566.1:ENST00000686521.1:ENST00000692077.1:ENST00000686956.1:ENST00000488329.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	25	2	3.97626	4.2050149999999995	4.43377	0.0300538	0.0162803	0.142135	0.101453
chr17	59123512	59123610	6802080	0	-	0.44898	(0.44,0.476]	chr17	671842	37	INTRON	INTRON	SKA2	ENSG00000182628.13	ENST00000330137.12:ENST00000580541.1:ENST00000578105.1:ENST00000578519.5:ENST00000583927.1:ENST00000581068.5:ENST00000437036.6:ENST00000583380.5:ENST00000583976.1:ENST00000584089.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	25	2	3.97626	4.2050149999999995	4.43377	0.0300538	0.0162803	0.142135	0.101453
chr19	46945804	46945904	7083085	0	+	0.47	(0.44,0.476]	chr19	708691	80	INTRON	INTRON	ARHGAP35	ENSG00000160007.19	ENST00000672722.1:ENST00000404338.8:ENST00000614079.1:ENST00000595822.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	25	2	3.97626	4.2050149999999995	4.43377	0.0300538	0.0162803	0.142135	0.101453
chr2	10811306	10811403	1066712	0	-	0.443299	(0.44,0.476]	chr2	113886	5	INTRON	INTRON	PDIA6	ENSG00000143870.13	ENST00000272227.8:ENST00000381611.8:ENST00000404371.6:ENST00000617249.4:ENST00000540494.5:ENST00000404824.2:ENST00000489662.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	25	2	3.97626	4.2050149999999995	4.43377	0.0300538	0.0162803	0.142135	0.101453
chr2	23856542	23856635	1080234	0	-	0.451613	(0.44,0.476]	chr2	115296	1	SS3_PROX	SS3_PROX:INTRON	ATAD2B	ENSG00000119778.15	ENST00000238789.10:ENST00000366438.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	25	2	3.97626	4.2050149999999995	4.43377	0.0300538	0.0162803	0.142135	0.101453
chr2	235709737	235709835	1043497	0	+	0.469388	(0.44,0.476]	chr2	111235	1	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1:ENST00000402604.6:ENST00000409538.5:ENST00000614409.4:ENST00000619456.4:ENST00000428334.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	25	2	3.97626	4.2050149999999995	4.43377	0.0300538	0.0162803	0.142135	0.101453
chr21	43866231	43866328	7413794	0	+	0.453608	(0.44,0.476]	chr21	755674	5	INTRON	INTRON	AGPAT3	ENSG00000160216.21	ENST00000291572.13	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	3.97626	4.2050149999999995	4.43377	0.0300538	0.0162803	0.142135	0.101453
chr3	47861783	47861882	1685200	0	-	0.474747	(0.44,0.476]	chr3	172155	39	INTRON	INTRON	MAP4	ENSG00000047849.22	ENST00000429422.5:ENST00000683076.1:ENST00000395734.7:ENST00000426837.6:ENST00000360240.10:ENST00000420772.6:ENST00000335271.9	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	3.97626	4.2050149999999995	4.43377	0.0300538	0.0162803	0.142135	0.101453
chr3	154285387	154285487	1843129	0	-	0.45	(0.44,0.476]	chr3	185381	4	SS3_PROX	SS3_PROX:INTRON	DHX36	ENSG00000174953.14	ENST00000496811.6:ENST00000308361.10:ENST00000329463.9:ENST00000481941.5:ENST00000469977.1:ENST00000481332.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	25	2	3.97626	4.2050149999999995	4.43377	0.0300538	0.0162803	0.142135	0.101453
chr5	32231321	32231416	2597561	0	-	0.452632	(0.44,0.476]	chr5	246757	6	INTRON	INTRON	MTMR12	ENSG00000150712.11	ENST00000280285.9:ENST00000382142.8:ENST00000264934.5:ENST00000510216.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	25	2	3.97626	4.2050149999999995	4.43377	0.0300538	0.0162803	0.142135	0.101453
chr6	110964567	110964665	2939262	0	+	0.469388	(0.44,0.476]	chr6	276824	17	INTRON	INTRON	GTF3C6	ENSG00000155115.7	ENST00000329970.8:ENST00000480191.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	25	2	3.97626	4.2050149999999995	4.43377	0.0300538	0.0162803	0.142135	0.101453
chr8	144204255	144204354	3880892	0	+	0.464646	(0.44,0.476]	chr8	356701	32	INTRON	INTRON	MROH1	ENSG00000179832.18	ENST00000326134.10:ENST00000532255.5:ENST00000423230.6:ENST00000534366.5:ENST00000527552.5:ENST00000528919.5:ENST00000527071.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	25	2	3.97626	4.2050149999999995	4.43377	0.0300538	0.0162803	0.142135	0.101453
chrX	131701660	131701759	7891691	0	-	0.464646	(0.44,0.476]	chrX	803380	54	INTRON	INTRON	FIRRE	ENSG00000213468.7	ENST00000649541.1:ENST00000662867.1:ENST00000663405.1:ENST00000665076.1:ENST00000637577.2:ENST00000654978.1:ENST00000647966.1:ENST00000649391.1:ENST00000648028.2	lncRNA	lncRNA	lncRNA	lncRNA	0	25	2	3.97626	4.2050149999999995	4.43377	0.0300538	0.0162803	0.142135	0.101453
chr11	9385743	9385843	4729419	0	+	0.35	(0.32,0.35]	chr11	437819	5	INTRON	INTRON	IPO7	ENSG00000205339.10	ENST00000379719.8:ENST00000533233.1:ENST00000527431.1:ENST00000630083.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	58	2	2.78073	4.20434	5.62795	0.01481	7.01392e-4	0.106702	0.024224
chr1	1553467	1553567	360108	0	-	0.55	(0.515,0.57]	chr1	41847	71	INTRON	INTRON	SSU72	ENSG00000160075.12	ENST00000291386.4:ENST00000378725.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	24	2	3.89856	4.20428	4.51	0.0280943	0.00809449	0.137011	0.0766625
chr1	168231013	168231113	250208	0	+	0.54	(0.515,0.57]	chr1	29735	1	SS3_PROX	SS3_PROX:INTRON	SFT2D2	ENSG00000213064.10	ENST00000471981.1:ENST00000367829.5:ENST00000271375.7:ENST00000630869.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	24	2	3.89856	4.20428	4.51	0.0280943	0.00809449	0.137011	0.0766625
chr11	3773131	3773231	4894924	0	-	0.53	(0.515,0.57]	chr11	458903	1	SS5_PROX	SS5_PROX:INTRON	NUP98	ENSG00000110713.17	ENST00000359171.8:ENST00000324932.12:ENST00000650171.1:ENST00000355260.7:ENST00000397004.8:ENST00000397007.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	24	2	3.89856	4.20428	4.51	0.0280943	0.00809449	0.137011	0.0766625
chr12	27715220	27715320	5099034	0	+	0.52	(0.515,0.57]	chr12	481796	4	SS5_PROX	SS5_PROX:INTRON	MRPS35	ENSG00000061794.13	ENST00000536569.1:ENST00000081029.8:ENST00000538315.5:ENST00000542791.1:ENST00000542199.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	24	2	3.89856	4.20428	4.51	0.0280943	0.00809449	0.137011	0.0766625
chr12	106986761	106986858	5403990	0	-	0.515464	(0.515,0.57]	chr12	515667	18	UTR5	UTR5:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MTERF2	ENSG00000120832.10	ENST00000240050.9:ENST00000392830.6:ENST00000552029.1:ENST00000548101.1:ENST00000550496.1:ENST00000547115.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	24	2	3.89856	4.20428	4.51	0.0280943	0.00809449	0.137011	0.0766625
chr13	50264848	50264948	5492815	0	+	0.52	(0.515,0.57]	chr13	526063	161	INTRON	INTRON	DLEU1	ENSG00000176124.15	ENST00000467721.5:ENST00000468522.5:ENST00000490577.5:ENST00000491341.5:ENST00000491615.5:ENST00000463474.7:ENST00000468168.5:ENST00000476738.5:ENST00000461527.7:ENST00000486895.5:ENST00000485007.5:ENST00000475913.5:ENST00000484529.5:ENST00000473075.3:ENST00000483444.5	lncRNA	lncRNA	lncRNA	lncRNA	0	24	2	3.89856	4.20428	4.51	0.0280943	0.00809449	0.137011	0.0766625
chr14	34960537	34960637	5868949	0	-	0.54	(0.515,0.57]	chr14	557461	52	INTRON	INTRON	SRP54-AS1	ENSG00000258704.7	ENST00000692503.1:ENST00000690110.1:ENST00000690001.1:ENST00000688072.1:ENST00000693002.1:ENST00000556355.5:ENST00000555015.5:ENST00000693259.1:ENST00000636540.1	transcribed_unitary_pseudogene	processed_transcript	transcribed_unitary_pseudogene	processed_transcript:transcribed_unitary_pseudogene	0	24	2	3.89856	4.20428	4.51	0.0280943	0.00809449	0.137011	0.0766625
chr19	8450807	8450907	7010822	0	+	0.55	(0.515,0.57]	chr19	696137	53	INTRON	INTRON	HNRNPM	ENSG00000099783.12	ENST00000348943.7:ENST00000597813.5:ENST00000600092.5:ENST00000325495.9:ENST00000600806.5:ENST00000620401.4:ENST00000594907.5:ENST00000596984.5:ENST00000601645.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	24	2	3.89856	4.20428	4.51	0.0280943	0.00809449	0.137011	0.0766625
chr2	126659863	126659962	862046	0	+	0.545455	(0.515,0.57]	chr2	96613	12	INTRON	INTRON	GYPC	ENSG00000136732.16	ENST00000459787.1:ENST00000259254.9:ENST00000409836.3:ENST00000356887.12	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	24	2	3.89856	4.20428	4.51	0.0280943	0.00809449	0.137011	0.0766625
chr20	32163329	32163427	7254865	0	+	0.520408	(0.515,0.57]	chr20	736931	16	INTRON	INTRON	TM9SF4	ENSG00000101337.16	ENST00000398022.7:ENST00000217315.9:ENST00000495749.1:ENST00000479591.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	24	2	3.89856	4.20428	4.51	0.0280943	0.00809449	0.137011	0.0766625
chr7	75940092	75940192	3339145	0	+	0.52	(0.515,0.57]	chr7	310884	185	INTRON	INTRON	POR	ENSG00000127948.16	ENST00000453773.5:ENST00000439963.5:ENST00000448410.5:ENST00000461988.6:ENST00000471238.5:ENST00000421059.1:ENST00000394893.5:ENST00000412521.5:ENST00000414186.5:ENST00000432753.5:ENST00000449920.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	24	2	3.89856	4.20428	4.51	0.0280943	0.00809449	0.137011	0.0766625
chr8	143313657	143313755	4081497	0	-	0.520408	(0.515,0.57]	chr8	370722	31	INTRON	INTRON	TOP1MT	ENSG00000184428.13	ENST00000519977.5:ENST00000329245.9:ENST00000521193.5:ENST00000519148.5:ENST00000523676.5	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	3.89856	4.20428	4.51	0.0280943	0.00809449	0.137011	0.0766625
chr9	94434322	94434421	4162763	0	+	0.555556	(0.515,0.57]	chr9	379497	47	INTRON	INTRON	MFSD14B	ENSG00000148110.17	ENST00000375344.8	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	3.89856	4.20428	4.51	0.0280943	0.00809449	0.137011	0.0766625
chr3	143005643	143005742	1529113	0	+	0.262626	[0,0.28]	chr3	159324	29	INTRON	INTRON	U2SURP	ENSG00000163714.18	ENST00000600150.5:ENST00000488497.7:ENST00000493782.5:ENST00000473835.7:ENST00000461591.5:ENST00000493598.6:ENST00000463563.6:ENST00000470400.5:ENST00000465175.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	87	2	2.93306	4.2040999999999995	5.47514	0.00354561	0.00180892	0.0529186	0.039365700000000003
chr4	163118748	163118847	2280818	0	-	0.292929	(0.28,0.32]	chr4	221548	81	INTRON	INTRON	NAF1	ENSG00000145414.9	ENST00000509434.5	protein_coding	protein_coding	protein_coding	protein_coding	2	80	2	2.4721	4.204015	5.93593	0.00906617	3.47635e-4	0.0854289	0.017378
chr9	137622061	137622161	4223502	0	+	0.42	(0.408,0.44]	chr9	388152	16	INTRON	INTRON	EHMT1	ENSG00000181090.21	ENST00000462484.5:ENST00000371394.6:ENST00000630754.2:ENST00000460843.6:ENST00000626216.2:ENST00000637593.1:ENST00000629335.2:ENST00000637335.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	55	2	3.00595	4.204015	5.40208	0.00781452	2.37882e-4	0.0759016	0.0136195
chr10	113914108	113914208	4527450	0	+	0.41	(0.408,0.44]	chr10	417479	57	UTR3	UTR3:EXON_MRNA	NHLRC2	ENSG00000196865.4	ENST00000369301.3	protein_coding	protein_coding	protein_coding	protein_coding	1	55	2	3.05705	4.2039599999999995	5.35087	0.00658331	3.00323e-4	0.0701901	0.0155054
chr20	31774371	31774470	7254017	0	+	0.292929	(0.28,0.32]	chr20	736763	23	INTRON	INTRON	TPX2	ENSG00000088325.16	ENST00000340513.4:ENST00000300403.11	protein_coding	protein_coding	protein_coding	protein_coding	1	64	2	2.96187	4.20385	5.44583	0.0114995	5.8721e-4	0.0889104	0.0220073
chr15	42269502	42269599	6155970	0	-	0.402062	(0.378,0.408]	chr15	585900	11	INTRON	INTRON	TMEM87A	ENSG00000103978.16	ENST00000389834.9:ENST00000448392.5:ENST00000562946.5:ENST00000569075.5:ENST00000568400.5:ENST00000563371.5:ENST00000561578.5:ENST00000566474.5:ENST00000307216.10:ENST00000568432.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	26	2	3.82294	4.203605	4.58427	0.044228	0.0128325	0.162255	0.0926667
chr2	74965057	74965156	815449	0	+	0.383838	(0.378,0.408]	chr2	91313	37	INTRON	INTRON	POLE4	ENSG00000115350.12	ENST00000483063.2:ENST00000233699.8:ENST00000465242.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	26	2	3.82294	4.203605	4.58427	0.044228	0.0128325	0.162255	0.0926667
chr21	44016646	44016746	7415075	0	+	0.4	(0.378,0.408]	chr21	755783	37	INTRON	INTRON	TRAPPC10	ENSG00000160218.13	ENST00000291574.9:ENST00000380221.7:ENST00000422875.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	26	2	3.82294	4.203605	4.58427	0.044228	0.0128325	0.162255	0.0926667
chr6	104981156	104981256	2930092	0	+	0.38	(0.378,0.408]	chr6	276110	225	INTRON	INTRON	LIN28B	ENSG00000187772.8	ENST00000635857.1:ENST00000637759.1:ENST00000345080.5	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	3.82294	4.203605	4.58427	0.044228	0.0128325	0.162255	0.0926667
chr9	94857860	94857960	4164360	0	+	0.38	(0.378,0.408]	chr9	379584	565	INTRON	INTRON	AOPEP	ENSG00000148120.18	ENST00000375315.8:ENST00000277198.6:ENST00000297979.9:ENST00000424143.5	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	3.82294	4.203605	4.58427	0.044228	0.0128325	0.162255	0.0926667
chr9	112423651	112423751	4185294	0	+	0.4	(0.378,0.408]	chr9	381776	43	INTRON	INTRON	HSDL2	ENSG00000119471.15	ENST00000398803.1:ENST00000488101.5:ENST00000398805.8:ENST00000467434.5:ENST00000480881.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	26	2	3.82294	4.203605	4.58427	0.044228	0.0128325	0.162255	0.0926667
chr6	87179253	87179353	2913495	0	+	0.48	(0.476,0.515]	chr6	275281	90	INTRON	INTRON	ZNF292	ENSG00000188994.13	ENST00000369577.8:ENST00000369578.6:ENST00000518845.1:ENST00000339907.8:ENST00000496806.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	73	2	2.73564	4.203390000000001	5.67114	0.00333144	6.83906e-5	0.0512081	0.00684369
chr3	172081296	172081396	1559961	0	+	0.37	(0.35,0.378]	chr3	161527	340	INTRON	INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000421757.5:ENST00000469491.5:ENST00000336824.8:ENST00000423424.5:ENST00000416957.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	59	2	2.72497	4.20331	5.68165	0.0198266	9.36553e-5	0.109608	0.00811835
chr2	53936362	53936462	1120224	0	-	0.31	(0.28,0.32]	chr2	120068	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PSME4	ENSG00000068878.15	ENST00000404125.6:ENST00000389993.7:ENST00000481518.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	97	2	2.7703700000000002	4.202605	5.63484	0.00108324	8.96564e-4	0.0303015	0.0273866
chr13	27151292	27151392	5566361	0	-	0.26	[0,0.28]	chr13	532032	343	INTRON	INTRON	USP12	ENSG00000152484.14	ENST00000282344.11	protein_coding	protein_coding	protein_coding	protein_coding	2	88	2	3.01286	4.20254	5.39222	0.00453865	0.00129799	0.0595107	0.0333764
chr8	144427294	144427391	4086084	0	-	0.463918	(0.44,0.476]	chr8	371983	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	VPS28	ENSG00000160948.14	ENST00000377348.6:ENST00000292510.6:ENST00000533806.5:ENST00000531032.5:ENST00000526734.5:ENST00000530790.5:ENST00000524521.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	74	2	2.42996	4.20251	5.97506	0.0104804	1.26309e-5	0.0855777	0.00264613
chr22	49778213	49778313	7602722	0	-	0.45	(0.44,0.476]	chr22	778622	4	SS3_PROX	SS3_PROX:INTRON	BRD1	ENSG00000100425.19	ENST00000404760.6:ENST00000404034.5:ENST00000216267.12:ENST00000438393.5:ENST00000457780.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	52	2	2.9586	4.2024	5.4462	0.00758318	5.83686e-4	0.0773151	0.0223753
chr10	21573723	21573822	4404811	0	+	0.555556	(0.515,0.57]	chr10	406453	13	INTRON	INTRON	MLLT10	ENSG00000078403.17	ENST00000651097.1:ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000650772.1:ENST00000651298.1:ENST00000495130.5:ENST00000377059.7:ENST00000476557.5:ENST00000462999.5:ENST00000430455.2:ENST00000479634.1:ENST00000480415.6:ENST00000652258.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	50	2	3.8052	4.202170000000001	4.59914	0.00616166	1.67082e-4	0.0676501	0.0111796
chr8	22251613	22251713	3712596	0	+	0.53	(0.515,0.57]	chr8	344788	12	UTR3	UTR3:EXON_MRNA	POLR3D	ENSG00000168495.13	ENST00000306433.9:ENST00000397802.8	protein_coding	protein_coding	protein_coding	protein_coding	1	50	2	3.8052	4.202170000000001	4.59914	0.00616166	1.67082e-4	0.0676501	0.0111796
chr1	146051983	146052080	541340	0	-	0.402062	(0.378,0.408]	chr1	63518	17	EXON_LNCRNA	EXON_LNCRNA	ENSG00000287190	ENSG00000287190.1	ENST00000659152.1	lncRNA	lncRNA	lncRNA	lncRNA	3	123	2	3.48644	4.2021	4.91776	0.00196368	2.39366e-5	0.0411469	0.00401973
chr9	137801284	137801384	4225346	0	+	0.53	(0.515,0.57]	chr9	388360	3	SS5_PROX	SS5_PROX:INTRON	EHMT1	ENSG00000181090.21	ENST00000460843.6:ENST00000636027.1:ENST00000637161.1:ENST00000637261.1:ENST00000462942.3:ENST00000637891.1:ENST00000637949.1:ENST00000493484.5:ENST00000482340.5:ENST00000486164.5:ENST00000488242.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	68	2	2.26012	4.201995	6.14387	0.0160033	6.48417e-6	0.109464	0.00192811
chr10	12186028	12186128	4558012	0	-	0.43	(0.408,0.44]	chr10	420695	4	SS5_PROX	SS5_PROX:INTRON	NUDT5	ENSG00000165609.13	ENST00000491614.6:ENST00000378937.7:ENST00000537776.5:ENST00000378952.7:ENST00000378940.7:ENST00000378927.7:ENST00000444732.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	25	2	3.97679	4.20196	4.42713	0.0299485	0.0173083	0.142135	0.104099
chr10	92861509	92861609	4491746	0	+	0.43	(0.408,0.44]	chr10	413705	125	INTRON	INTRON	EXOC6	ENSG00000138190.17	ENST00000671701.1:ENST00000672817.1:ENST00000371552.8:ENST00000443748.6:ENST00000371543.5:ENST00000260762.10	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	3.97679	4.20196	4.42713	0.0299485	0.0173083	0.142135	0.104099
chr11	108582420	108582520	5036249	0	-	0.41	(0.408,0.44]	chr11	474574	144	INTRON	INTRON	EXPH5	ENSG00000110723.12	ENST00000265843.9:ENST00000525344.5	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	3.97679	4.20196	4.42713	0.0299485	0.0173083	0.142135	0.104099
chr16	8917656	8917753	6442278	0	-	0.412371	(0.408,0.44]	chr16	620538	1	INTRON	INTRON	USP7	ENSG00000187555.16	ENST00000673704.1:ENST00000344836.9:ENST00000563961.5:ENST00000381886.8:ENST00000565455.5:ENST00000563085.5:ENST00000542333.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	25	2	3.97679	4.20196	4.42713	0.0299485	0.0173083	0.142135	0.104099
chr16	25132823	25132923	6330450	0	+	0.44	(0.408,0.44]	chr16	606090	3	SS5_PROX	SS5_PROX:INTRON	LCMT1	ENSG00000205629.12	ENST00000380962.9:ENST00000564011.5:ENST00000380966.8:ENST00000399069.8:ENST00000577157.1:ENST00000570981.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	25	2	3.97679	4.20196	4.42713	0.0299485	0.0173083	0.142135	0.104099
chr16	87345613	87345709	6537444	0	-	0.427083	(0.408,0.44]	chr16	633408	15	INTRON	INTRON	FBXO31	ENSG00000103264.18	ENST00000311635.12:ENST00000565593.1:ENST00000618298.6:ENST00000636077.1:ENST00000561664.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	25	2	3.97679	4.20196	4.42713	0.0299485	0.0173083	0.142135	0.104099
chr18	36035431	36035530	6963222	0	-	0.414141	(0.408,0.44]	chr18	689069	12	INTRON	INTRON	RPRD1A	ENSG00000141425.18	ENST00000399022.9:ENST00000590898.5:ENST00000357384.8:ENST00000588737.5:ENST00000589050.1:ENST00000592674.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:nonsense_mediated_decay	0	25	2	3.97679	4.20196	4.42713	0.0299485	0.0173083	0.142135	0.104099
chr2	24608821	24608921	710436	0	+	0.43	(0.408,0.44]	chr2	82224	239	INTRON	INTRON	NCOA1	ENSG00000084676.16	ENST00000348332.8:ENST00000496333.5:ENST00000406961.5:ENST00000405141.5:ENST00000407230.5:ENST00000483904.5:ENST00000288599.9:ENST00000395856.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	25	2	3.97679	4.20196	4.42713	0.0299485	0.0173083	0.142135	0.104099
chr2	147995056	147995156	1242520	0	-	0.42	(0.408,0.44]	chr2	131884	126	INTRON	INTRON	ORC4	ENSG00000115947.14	ENST00000392857.10:ENST00000264169.6:ENST00000536575.5:ENST00000535373.5:ENST00000540442.5:ENST00000461711.5:ENST00000490200.5:ENST00000416719.5:ENST00000457954.5:ENST00000440042.1:ENST00000495601.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	25	2	3.97679	4.20196	4.42713	0.0299485	0.0173083	0.142135	0.104099
chr2	178608366	178608466	931824	0	+	0.44	(0.408,0.44]	chr2	102404	1	SS5_PROX	SS5_PROX:INTRON	TTN-AS1	ENSG00000237298.10	ENST00000630096.2:ENST00000659121.1:ENST00000456053.5:ENST00000590773.6:ENST00000592600.6:ENST00000592630.5:ENST00000592750.5:ENST00000653807.1:ENST00000585451.5:ENST00000657023.1:ENST00000626117.2:ENST00000590807.5:ENST00000626954.2:ENST00000625480.2:ENST00000628826.2:ENST00000628296.2:ENST00000626138.2:ENST00000625536.2:ENST00000589907.5:ENST00000610290.4:ENST00000589234.5:ENST00000589830.1:ENST00000671355.1:ENST00000589487.5:ENST00000627527.1	lncRNA	lncRNA	lncRNA	lncRNA	0	25	2	3.97679	4.20196	4.42713	0.0299485	0.0173083	0.142135	0.104099
chr2	230749241	230749341	1030523	0	+	0.44	(0.408,0.44]	chr2	110002	348	INTRON	INTRON	CAB39	ENSG00000135932.12	ENST00000258418.10:ENST00000409788.7:ENST00000410084.7	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	3.97679	4.20196	4.42713	0.0299485	0.0173083	0.142135	0.104099
chr5	179719167	179719267	2560906	0	+	0.42	(0.408,0.44]	chr5	244931	1	SS3_PROX	SS3_PROX:INTRON	CANX	ENSG00000127022.16	ENST00000681674.1:ENST00000681712.1:ENST00000681903.1:ENST00000680406.1:ENST00000502296.6:ENST00000504734.5:ENST00000452673.6:ENST00000679719.1:ENST00000679523.1:ENST00000679395.1:ENST00000681504.1:ENST00000679642.1:ENST00000681894.1:ENST00000680504.1:ENST00000681265.1:ENST00000680894.1:ENST00000680812.1:ENST00000680614.1:ENST00000680985.1:ENST00000680837.1:ENST00000680827.1:ENST00000681576.1:ENST00000680984.1:ENST00000680042.1:ENST00000681762.1:ENST00000681476.1:ENST00000681072.1:ENST00000247461.9:ENST00000513246.6:ENST00000680618.1:ENST00000502673.6:ENST00000680092.1:ENST00000506654.6:ENST00000514032.5:ENST00000681733.1:ENST00000679471.1:ENST00000679527.1:ENST00000680006.1:ENST00000681398.1:ENST00000681431.1:ENST00000680013.1:ENST00000681076.1:ENST00000681168.1:ENST00000509563.2:ENST00000681342.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	25	2	3.97679	4.20196	4.42713	0.0299485	0.0173083	0.142135	0.104099
chr5	179884637	179884737	2780566	0	-	0.43	(0.408,0.44]	chr5	262555	1	SS3_PROX	SS3_PROX:INTRON	TBC1D9B	ENSG00000197226.13	ENST00000356834.7:ENST00000355235.8:ENST00000524222.2:ENST00000522029.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	25	2	3.97679	4.20196	4.42713	0.0299485	0.0173083	0.142135	0.104099
chr8	141281611	141281711	4080856	0	-	0.43	(0.408,0.44]	chr8	370669	266	INTRON	INTRON	SLC45A4	ENSG00000022567.10	ENST00000517878.6:ENST00000520137.1:ENST00000521804.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	25	2	3.97679	4.20196	4.42713	0.0299485	0.0173083	0.142135	0.104099
chr16	89346012	89346111	6542137	0	-	0.474747	(0.44,0.476]	chr16	634215	23	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000647238.1:ENST00000644045.1:ENST00000643147.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	102	2	2.36262	4.201875	6.04113	0.00255041	8.64562e-6	0.0449067	0.00211124
chr1	114731318	114731403	528351	0	-	0.329412	(0.32,0.35]	chr1	62286	3	INTRON	INTRON	CSDE1	ENSG00000009307.17	ENST00000339438.10:ENST00000610726.5:ENST00000692719.1:ENST00000358528.9:ENST00000688211.1:ENST00000438362.7:ENST00000689217.1:ENST00000689989.1:ENST00000686025.1:ENST00000686781.1:ENST00000686123.1:ENST00000684913.1:ENST00000686235.1:ENST00000693467.1:ENST00000689732.1:ENST00000693644.1:ENST00000687759.1:ENST00000692044.1:ENST00000689885.1:ENST00000691403.1:ENST00000692629.1:ENST00000690013.1:ENST00000690420.1:ENST00000692950.1:ENST00000686667.1:ENST00000691032.1:ENST00000685676.1:ENST00000529046.6:ENST00000692672.1:ENST00000691377.1:ENST00000688611.1:ENST00000690207.1:ENST00000693311.1:ENST00000689510.1:ENST00000686581.1:ENST00000689727.1:ENST00000690784.1:ENST00000483030.2:ENST00000687548.1:ENST00000261443.9:ENST00000530886.5:ENST00000369530.5:ENST00000534699.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	103	2	2.40664	4.2017	5.99676	0.00189533	1.55894e-4	0.0402736	0.0113565
chr19	4413441	4413540	7001871	0	+	0.525253	(0.515,0.57]	chr19	694523	33	INTRON	INTRON	CHAF1A	ENSG00000167670.16	ENST00000301280.10:ENST00000587739.1	protein_coding	protein_coding	protein_coding	protein_coding	3	76	2	2.92506	4.201525	5.47799	2.50659e-4	2.09356e-4	0.0140705	0.0131276
chr19	34454353	34454443	7053389	0	+	0.277778	[0,0.28]	chr19	703547	1	SSB_ADJ	SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	UBA2	ENSG00000126261.13	ENST00000586313.1:ENST00000246548.9:ENST00000439527.6:ENST00000591016.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	86	2	2.8486	4.20108	5.55356	0.00278704	0.00254189	0.0469265	0.0465056
chr1	16453771	16453867	36223	0	+	0.458333	(0.44,0.476]	chr1	4424	14	INTRON	INTRON	NECAP2	ENSG00000157191.20	ENST00000504551.6:ENST00000337132.10:ENST00000457722.6:ENST00000443980.6:ENST00000492095.5:ENST00000459640.5:ENST00000496239.5:ENST00000513161.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	51	2	3.25801	4.200895	5.14378	0.00248185	0.00184943	0.0460771	0.0388609
chr19	49096051	49096150	7088484	0	+	0.444444	(0.44,0.476]	chr19	709545	52	INTRON	INTRON	SNRNP70	ENSG00000104852.15	ENST00000601065.5:ENST00000598984.5:ENST00000598441.6:ENST00000401730.5:ENST00000221448.9:ENST00000595231.5:ENST00000601411.1:ENST00000599687.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	51	2	3.25801	4.200895	5.14378	0.00248185	0.00184943	0.0460771	0.0388609
chr10	119046029	119046128	4704554	0	-	0.353535	(0.35,0.378]	chr10	433933	15	INTRON	INTRON	EIF3A	ENSG00000107581.13	ENST00000369144.8:ENST00000541549.2	protein_coding	protein_coding	protein_coding	protein_coding	3	87	2	2.32061	4.20086	6.08111	0.00545884	6.68078e-5	0.0669938	0.00720358
chr2	235540135	235540235	1041798	0	+	0.46	(0.44,0.476]	chr2	111222	152	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1:ENST00000402604.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	51	2	3.2029	4.20085	5.1988	0.00308681	0.00151532	0.0510391	0.0352794
chr18	162882	162982	6854867	0	+	0.52	(0.515,0.57]	chr18	679493	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	USP14	ENSG00000101557.15	ENST00000582707.5:ENST00000400266.7:ENST00000261601.8:ENST00000580410.5:ENST00000578942.5:ENST00000383589.6:ENST00000581983.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	50	2	2.83501	4.20059	5.56617	0.0117686	5.44229e-5	0.0894475	0.00603408
chr4	138225213	138225313	2245659	0	-	0.23	[0,0.28]	chr4	219502	15	INTRON	INTRON	SLC7A11	ENSG00000151012.13	ENST00000280612.9	protein_coding	protein_coding	protein_coding	protein_coding	2	99	2	3.4551	4.200355	4.94561	0.0150263	1.71783e-4	0.0994339	0.0113605
chr1	15619103	15619203	33494	0	+	0.44	(0.408,0.44]	chr1	4078	9	INTRON	INTRON	DDI2	ENSG00000197312.12	ENST00000480945.6:ENST00000486680.1:ENST00000546927.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	52	2	3.50731	4.20029	4.89327	0.00458906	8.5918e-4	0.0595107	0.0265787
chr10	22698238	22698338	4580341	0	-	0.36	(0.35,0.378]	chr10	422046	37	INTRON	INTRON	PIP4K2A	ENSG00000150867.14	ENST00000376573.9:ENST00000545335.5	protein_coding	protein_coding	protein_coding	protein_coding	1	55	2	3.54186	4.200279999999999	4.8587	0.00695662	8.14353e-4	0.0718189	0.02604
chr1	224271293	224271391	644309	0	-	0.510204	(0.476,0.515]	chr1	76099	15	INTRON	INTRON	NVL	ENSG00000143748.18	ENST00000391875.6:ENST00000469968.5:ENST00000482491.5:ENST00000281701.11:ENST00000469075.5:ENST00000340871.8	protein_coding	protein_coding	protein_coding	protein_coding	2	73	2	2.77151	4.20022	5.62893	0.00288481	8.45697e-5	0.0475859	0.00776967
chr1	247322097	247322197	684361	0	-	0.54	(0.515,0.57]	chr1	80224	84	INTRON	INTRON	ZNF496	ENSG00000162714.13	ENST00000294753.8:ENST00000682384.1:ENST00000461277.2	protein_coding	protein_coding	protein_coding	protein_coding	1	50	2	3.40388	4.200115	4.99635	0.00142538	8.06602e-4	0.0340865	0.0258804
chr18	3008222	3008322	6945051	0	-	0.52	(0.515,0.57]	chr18	686840	255	INTRON	INTRON	LPIN2	ENSG00000101577.10	ENST00000261596.8:ENST00000677752.1	protein_coding	protein_coding	protein_coding	protein_coding	1	50	2	3.40388	4.200115	4.99635	0.00142538	8.06602e-4	0.0340865	0.0258804
chr8	129948565	129948665	4063250	0	-	0.54	(0.515,0.57]	chr8	369833	2	SS5_PROX	SS5_PROX:INTRON	CYRIB	ENSG00000153310.21	ENST00000694912.1:ENST00000523288.5:ENST00000519110.5:ENST00000401979.6:ENST00000523509.5:ENST00000517654.5:ENST00000519142.5:ENST00000518879.5:ENST00000522702.5:ENST00000521223.5:ENST00000518283.5:ENST00000523993.5:ENST00000519020.5:ENST00000518167.5:ENST00000517672.5:ENST00000522361.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	50	2	3.40388	4.200115	4.99635	0.00142538	8.06602e-4	0.0340865	0.0258804
chr6	160062719	160062816	3023939	0	+	0.391753	(0.378,0.408]	chr6	282156	1	SS5_PROX	SS5_PROX:INTRON	IGF2R	ENSG00000197081.16	ENST00000676781.1:ENST00000677704.1:ENST00000356956.6:ENST00000650503.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	52	2	3.17089	4.200065	5.22924	0.00357279	0.00172721	0.0548435	0.0374701
chrX	154707838	154707938	7914884	0	-	0.24	[0,0.28]	chrX	806091	74	INTRON	INTRON	GAB3	ENSG00000160219.12	ENST00000496390.5:ENST00000424127.3:ENST00000369575.7:ENST00000369568.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	63	2	3.05114	4.20002	5.3489	0.0075493	0.00514751	0.0773151	0.062965
chr3	138756977	138757077	1830718	0	-	0.29	(0.28,0.32]	chr3	184043	6	INTRON	INTRON	PIK3CB	ENSG00000051382.9	ENST00000674063.1:ENST00000289153.6:ENST00000477593.5:ENST00000462898.5:ENST00000483968.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	60	2	3.47062	4.199955	4.92929	0.0098607	0.00137212	0.0838128	0.0340241
chr3	9382105	9382204	1358828	0	+	0.222222	[0,0.28]	chr3	142635	11	INTRON	INTRON	THUMPD3	ENSG00000134077.16	ENST00000345094.7:ENST00000452837.7:ENST00000515662.6:ENST00000416603.1	protein_coding	protein_coding	protein_coding	protein_coding	1	73	2	3.30695	4.19988	5.09281	0.00469836	0.00372534	0.0600108	0.0561984
chr7	27526020	27526116	3509567	0	-	0.322917	(0.32,0.35]	chr7	327307	7	UTR3	UTR3:EXON_MRNA	HIBADH	ENSG00000106049.9	ENST00000265395.7:ENST00000428288.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	62	2	3.27858	4.199785	5.12099	0.00368368	0.00143632	0.0535094	0.0347139
chr9	128089564	128089664	4202645	0	+	0.39	(0.378,0.408]	chr9	383913	206	INTRON	INTRON	SLC25A25	ENSG00000148339.13	ENST00000373068.6:ENST00000373069.10	protein_coding	protein_coding	protein_coding	protein_coding	2	76	2	2.43657	4.19975	5.96293	0.0106733	1.59815e-5	0.0861859	0.00301858
chr6	136635728	136635828	3234059	0	-	0.43	(0.408,0.44]	chr6	300622	124	INTRON	INTRON	MAP3K5	ENSG00000197442.10	ENST00000359015.5	protein_coding	protein_coding	protein_coding	protein_coding	1	52	2	2.96007	4.199735	5.4394	0.00753901	6.50925e-4	0.0773151	0.0232863
chr6	160067552	160067650	3023992	0	+	0.530612	(0.515,0.57]	chr6	282173	23	INTRON	INTRON	IGF2R	ENSG00000197081.16	ENST00000676781.1:ENST00000677704.1:ENST00000356956.6:ENST00000650503.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	49	2	3.09002	4.199615	5.30921	0.00491099	1.98811e-4	0.0609494	0.0122787
chr11	33144769	33144869	4940811	0	-	0.53	(0.515,0.57]	chr11	462874	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	CSTF3	ENSG00000176102.13	ENST00000323959.9:ENST00000524827.6:ENST00000526480.1:ENST00000438862.6:ENST00000431742.2:ENST00000524556.1:ENST00000524775.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	49	2	3.1473	4.199565	5.25183	0.00397184	2.6074e-4	0.0549214	0.014326
chr1	23072773	23072873	44308	0	+	0.5	(0.476,0.515]	chr1	5313	1	SS3_PROX	SS3_PROX:INTRON	KDM1A	ENSG00000004487.18	ENST00000692214.1:ENST00000686934.1:ENST00000689853.1:ENST00000465864.2:ENST00000691256.1:ENST00000688122.1:ENST00000692056.1:ENST00000692853.1:ENST00000689366.1:ENST00000686270.1:ENST00000685102.1:ENST00000690627.1:ENST00000686771.1:ENST00000692209.1:ENST00000686339.1:ENST00000691813.1:ENST00000693156.1:ENST00000688235.1:ENST00000692975.1:ENST00000687202.1:ENST00000691682.1:ENST00000691404.1:ENST00000691694.1:ENST00000688680.1:ENST00000356634.7:ENST00000400181.9:ENST00000689677.1:ENST00000686793.1:ENST00000689971.1:ENST00000688943.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	178	2	3.52945	4.19928	4.86911	7.92437e-6	7.92014e-7	0.0020223	5.43864e-4
chr17	17235051	17235148	6736055	0	-	0.474227	(0.44,0.476]	chr17	660935	18	INTRON	INTRON	FLCN	ENSG00000154803.13	ENST00000285071.9:ENST00000389169.9:ENST00000417064.1:ENST00000389171.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	51	2	3.3111	4.198845	5.08659	0.00226401	0.0020006	0.0425438	0.0412555
chr1	65592256	65592356	138913	0	+	0.32	(0.28,0.32]	chr1	15519	2	SS3_PROX	SS3_PROX:INTRON	LEPR	ENSG00000116678.20	ENST00000371060.7:ENST00000371059.7:ENST00000349533.11:ENST00000616738.4:ENST00000344610.12:ENST00000462765.5:ENST00000371058.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	79	2	2.55521	4.1987950000000005	5.84238	0.0067419	5.0114e-4	0.0739405	0.0206993
chr12	56639725	56639807	5335745	0	-	0.378049	(0.378,0.408]	chr12	510115	4	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ATP5F1B	ENSG00000110955.9	ENST00000262030.8:ENST00000548474.2:ENST00000547808.5:ENST00000547250.5:ENST00000551020.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	54	2095	2	3.9572	4.198755	4.44031	2.8056e-10	6.51224e-12	2.15055e-6	2.13194e-7
chr1	167945421	167945521	248576	0	+	0.31	(0.28,0.32]	chr1	29536	78	INTRON	INTRON	DCAF6	ENSG00000143164.16	ENST00000450548.5:ENST00000470919.5:ENST00000432587.6:ENST00000367843.7:ENST00000470721.5:ENST00000367840.4:ENST00000312263.10:ENST00000455334.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	59	2	3.35108	4.198435	5.04579	0.00714672	0.00221345	0.0723634	0.0435144
chr22	49479196	49479296	7600871	0	-	0.39	(0.378,0.408]	chr22	778566	376	INTRON	INTRON	MIR3667HG	ENSG00000188511.13	ENST00000414287.5:ENST00000416411.1	lncRNA	lncRNA	lncRNA	lncRNA	4	105	2	2.3043	4.19823	6.09216	0.0035117	7.66781e-6	0.0525467	0.00197346
chr10	22564354	22564453	4578986	0	-	0.40404	(0.378,0.408]	chr10	421979	132	INTRON	INTRON	PIP4K2A	ENSG00000150867.14	ENST00000376573.9:ENST00000323883.11:ENST00000545335.5:ENST00000604912.1	protein_coding	protein_coding	protein_coding	protein_coding	2	70	2	3.01886	4.198125	5.37739	0.0010014	7.99379e-4	0.0288906	0.0258804
chr1	247167853	247167953	683833	0	-	0.29	(0.28,0.32]	chr1	80174	76	INTRON	INTRON	ZNF124	ENSG00000196418.13	ENST00000472531.5:ENST00000491356.5:ENST00000543802.3:ENST00000340684.10:ENST00000491848.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	68	2	3.43158	4.19806	4.96454	0.00344078	0.00244075	0.0539802	0.0445752
chr13	113484596	113484696	5652773	0	-	0.32	(0.28,0.32]	chr13	538722	4	SS3_PROX	SS3_PROX:INTRON	DCUN1D2	ENSG00000150401.15	ENST00000478244.6:ENST00000332592.7:ENST00000375403.6:ENST00000438545.6:ENST00000496873.1:ENST00000439909.2:ENST00000465710.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	59	2	2.91832	4.198055	5.47779	0.0102484	0.00187048	0.089002	0.0390476
chr11	47807640	47807725	4951744	0	-	0.364706	(0.35,0.378]	chr11	464554	1	INTRON	INTRON	NUP160	ENSG00000030066.14	ENST00000694866.1:ENST00000378460.7:ENST00000530326.5:ENST00000528071.5	protein_coding	protein_coding	protein_coding	protein_coding	2	73	2	2.49643	4.19801	5.89959	0.00752974	1.52893e-4	0.0773151	0.0112857
chr4	165337189	165337288	2079727	0	+	0.383838	(0.378,0.408]	chr4	205568	32	INTRON	INTRON	MSMO1	ENSG00000052802.13	ENST00000507013.5:ENST00000261507.11:ENST00000393766.6:ENST00000504317.1	protein_coding	protein_coding	protein_coding	protein_coding	3	86	2	2.92764	4.197985	5.46833	7.05018e-4	3.01906e-4	0.024224	0.0155054
chr16	75006769	75006869	6389496	0	+	0.41	(0.408,0.44]	chr16	614482	40	INTRON	INTRON	ZNRF1	ENSG00000186187.12	ENST00000335325.9:ENST00000320619.10:ENST00000567962.5:ENST00000566250.5:ENST00000564320.1:ENST00000568511.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	54	2	2.74518	4.19784	5.6505	0.0152229	2.70553e-4	0.108535	0.0150813
chr11	33730223	33730323	4941275	0	-	0.49	(0.476,0.515]	chr11	462933	68	INTRON	INTRON	CD59	ENSG00000085063.17	ENST00000642928.2:ENST00000651785.1:ENST00000395850.9:ENST00000652086.1:ENST00000426650.7:ENST00000533403.6:ENST00000351554.8:ENST00000527577.5:ENST00000643183.1:ENST00000528700.2	protein_coding	protein_coding	protein_coding	protein_coding	1	54	2	3.10264	4.197725	5.29281	0.00543163	4.07635e-4	0.0645052	0.0181306
chr9	125283166	125283266	4198469	0	+	0.49	(0.476,0.515]	chr9	383148	138	INTRON	INTRON	GAPVD1	ENSG00000165219.23	ENST00000497580.5:ENST00000461379.5:ENST00000297933.11:ENST00000394084.5:ENST00000469528.5:ENST00000470056.5:ENST00000394105.6:ENST00000394083.6:ENST00000495955.5:ENST00000467750.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	54	2	3.10264	4.197725	5.29281	0.00543163	4.07635e-4	0.0645052	0.0181306
chr2	38370742	38370841	1099283	0	-	0.454545	(0.44,0.476]	chr2	117880	113	INTRON	INTRON	ATL2	ENSG00000119787.14	ENST00000378954.9:ENST00000406122.5:ENST00000405384.6:ENST00000402054.5:ENST00000419554.6:ENST00000651368.1:ENST00000452935.6:ENST00000449130.5:ENST00000443098.5:ENST00000456736.5:ENST00000472097.1:ENST00000451483.1:ENST00000416222.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	68	2	2.73781	4.19757	5.65733	0.00276493	2.3957e-4	0.04867	0.0142132
chr7	102406446	102406544	3371510	0	+	0.397959	(0.378,0.408]	chr7	315472	14	INTRON	INTRON	PRKRIP1	ENSG00000128563.13	ENST00000469763.5:ENST00000482549.5:ENST00000496391.5:ENST00000482465.5:ENST00000462601.5:ENST00000397912.3:ENST00000468316.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	53	2	2.92665	4.19749	5.46833	0.0086017	7.05018e-4	0.083729	0.024224
chr15	34426815	34426915	6133157	0	-	0.47	(0.44,0.476]	chr15	584282	187	INTRON	INTRON	GOLGA8A	ENSG00000175265.18	ENST00000359187.5:ENST00000569781.1:ENST00000565885.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	88	2	2.38636	4.1974149999999995	6.00847	0.0047296	1.04381e-5	0.0600445	0.00235341
chr4	82874210	82874310	2179927	0	-	0.54	(0.515,0.57]	chr4	214368	2	SS5_PROX	SS5_PROX:INTRON	SEC31A	ENSG00000138674.17	ENST00000395310.7:ENST00000513858.5:ENST00000348405.8:ENST00000448323.5:ENST00000311785.11:ENST00000509142.5:ENST00000443462.6:ENST00000500777.6:ENST00000505472.5:ENST00000355196.6:ENST00000508502.5:ENST00000505984.5:ENST00000508479.5:ENST00000436790.6:ENST00000503058.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	49	2	3.03037	4.197385	5.3644	0.00608732	1.52226e-4	0.0676501	0.0106137
chr6	690486	690582	3040933	0	-	0.552083	(0.515,0.57]	chr6	283374	9	INTRON	INTRON	EXOC2	ENSG00000112685.14	ENST00000230449.9:ENST00000443083.5:ENST00000475028.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	49	2	3.03037	4.197385	5.3644	0.00608732	1.52226e-4	0.0676501	0.0106137
chr16	21410633	21410733	6460407	0	-	0.4	(0.378,0.408]	chr16	623169	3	SS5_PROX	SS5_PROX:INTRON	NPIPB3	ENSG00000169246.16	ENST00000504841.6:ENST00000419180.6:ENST00000448012.6:ENST00000542953.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	52	2	3.33026	4.19719	5.06412	0.0030522	0.00189824	0.0493883	0.0402736
chr7	11093903	11094002	3283812	0	+	0.414141	(0.408,0.44]	chr7	304989	310	INTRON	INTRON	PHF14	ENSG00000106443.17	ENST00000642461.1:ENST00000634607.2:ENST00000403050.7:ENST00000521747.5:ENST00000423760.6:ENST00000481418.5:ENST00000470665.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	56	2	3.33067	4.19705	5.06343	0.0024459	0.00101725	0.0445752	0.0293497
chr10	24650993	24651093	4581215	0	-	0.43	(0.408,0.44]	chr10	422181	155	INTRON	INTRON	ARHGAP21	ENSG00000107863.20	ENST00000612832.4:ENST00000396432.7:ENST00000680286.1:ENST00000376410.7:ENST00000446003.5:ENST00000476499.1:ENST00000416305.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	68	2	2.86612	4.19685	5.52758	0.00157924	4.54953e-4	0.0366789	0.0196892
chr17	57987391	57987484	6799855	0	-	0.494624	(0.476,0.515]	chr17	671414	9	INTRON	INTRON	VEZF1	ENSG00000136451.9	ENST00000581208.2:ENST00000583932.1	protein_coding	protein_coding	protein_coding	protein_coding	1	51	2	3.29939	4.196809999999999	5.09423	0.00211868	0.00204588	0.0425644	0.04086
chr3	20172788	20172884	1640730	0	-	0.395833	(0.378,0.408]	chr3	168343	12	INTRON	INTRON	SGO1	ENSG00000129810.15	ENST00000306698.6:ENST00000419233.6:ENST00000263753.8:ENST00000425061.5:ENST00000443724.5:ENST00000421451.5:ENST00000452020.5:ENST00000442720.5:ENST00000412997.6:ENST00000437051.5:ENST00000417364.1	protein_coding	protein_coding	protein_coding	protein_coding	1	56	2	2.95459	4.1967550000000005	5.43892	0.00957623	2.28412e-4	0.0820838	0.0133228
chr2	105370304	105370402	1200617	0	-	0.5	(0.476,0.515]	chr2	128321	22	INTRON	INTRON	FHL2	ENSG00000115641.19	ENST00000409177.6:ENST00000322142.13:ENST00000393352.7:ENST00000344213.9:ENST00000530340.6:ENST00000393353.7:ENST00000358129.8:ENST00000409807.5:ENST00000408995.5:ENST00000452732.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	51	2	3.13389	4.19667	5.25945	0.00405473	0.00111445	0.0578376	0.0306328
chr17	70111272	70111372	6828561	0	-	0.46	(0.44,0.476]	chr17	675009	381	INTRON	INTRON	ENSG00000230258	ENSG00000230258.6	ENST00000435112.5	lncRNA	lncRNA	lncRNA	lncRNA	3	82	2	2.73545	4.19639	5.65733	7.908e-4	2.3957e-4	0.0258324	0.0142132
chr6	150974654	150974754	2998971	0	+	0.32	(0.28,0.32]	chr6	280593	22	INTRON	INTRON	MTHFD1L	ENSG00000120254.16	ENST00000611279.4:ENST00000367321.8:ENST00000618312.4:ENST00000478643.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	108	2	2.25951	4.19634	6.13317	0.00397414	1.54938e-4	0.0577209	0.0113252
chr19	55025957	55026050	7211917	0	-	0.451613	(0.44,0.476]	chr19	732192	3	INTRON	INTRON	GP6	ENSG00000088053.11	ENST00000417454.5:ENST00000310373.7:ENST00000333884.2	protein_coding	protein_coding	protein_coding	protein_coding	1	55	2	2.80275	4.19632	5.58989	0.0146513	9.76499e-5	0.0982604	0.00830626
chr2	53930944	53931041	1120165	0	-	0.443299	(0.44,0.476]	chr2	120046	23	INTRON	INTRON	PSME4	ENSG00000068878.15	ENST00000404125.6:ENST00000389993.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	55	2	2.80275	4.19632	5.58989	0.0146513	9.76499e-5	0.0982604	0.00830626
chr17	82267032	82267132	6852770	0	-	0.42	(0.408,0.44]	chr17	679165	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	CSNK1D	ENSG00000141551.15	ENST00000398519.9:ENST00000314028.11:ENST00000581241.5:ENST00000392334.6:ENST00000403276.7:ENST00000582844.5:ENST00000580446.1:ENST00000581660.5:ENST00000578194.5:ENST00000579316.5:ENST00000584472.5:ENST00000585026.1:ENST00000579308.1:ENST00000581655.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	51	2	3.31257	4.1962	5.07983	0.00247652	0.00198621	0.0446195	0.0411469
chr8	70608343	70608416	3967206	0	-	0.657534	(0.57,1]	chr8	363972	3	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	TRAM1	ENSG00000067167.8	ENST00000262213.7:ENST00000520700.1:ENST00000518678.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	127	2	3.74987	4.196195	4.64252	5.23705e-7	2.17892e-9	4.21981e-4	1.26299e-5
chr11	28210362	28210461	4753184	0	+	0.343434	(0.32,0.35]	chr11	440113	125	INTRON	INTRON	METTL15	ENSG00000169519.21	ENST00000406787.7:ENST00000451385.6:ENST00000407364.8:ENST00000532947.2:ENST00000634627.1:ENST00000634973.1:ENST00000303459.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	27	2	3.77344	4.196165000000001	4.61889	0.0596635	0.0166646	0.189982	0.102621
chr4	169567043	169567143	2296696	0	-	0.34	(0.32,0.35]	chr4	222229	33	INTRON	INTRON	NEK1	ENSG00000137601.18	ENST00000687054.1:ENST00000507142.6:ENST00000686697.1:ENST00000688934.1:ENST00000685111.1:ENST00000687528.1:ENST00000687643.1:ENST00000685677.1:ENST00000439128.6:ENST00000511633.5:ENST00000510533.5:ENST00000512193.5:ENST00000693604.1:ENST00000692450.1:ENST00000687219.1:ENST00000693085.1:ENST00000509912.5:ENST00000690631.1:ENST00000688487.1:ENST00000688653.1:ENST00000692868.1:ENST00000692218.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	27	2	3.77344	4.196165000000001	4.61889	0.0596635	0.0166646	0.189982	0.102621
chr5	163416306	163416406	2770051	0	-	0.34	(0.32,0.35]	chr5	260675	1590	INTRON	INTRON	ENSG00000254186	ENSG00000254186.3	ENST00000646617.1:ENST00000503504.1	lncRNA	lncRNA	lncRNA	lncRNA	0	27	2	3.77344	4.196165000000001	4.61889	0.0596635	0.0166646	0.189982	0.102621
chr6	52379413	52379513	2875640	0	+	0.35	(0.32,0.35]	chr6	272903	54	INTRON	INTRON	PAQR8:EFHC1	ENSG00000170915.9:ENSG00000096093.16	ENST00000512121.1:ENST00000635984.1:ENST00000637849.1:ENST00000635760.1:ENST00000442253.3:ENST00000491749.2:ENST00000360726.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	27	2	3.77344	4.196165000000001	4.61889	0.0596635	0.0166646	0.189982	0.102621
chr9	111481518	111481617	4315266	0	-	0.323232	(0.32,0.35]	chr9	396845	82	INTRON	INTRON	ECPAS	ENSG00000136813.15	ENST00000684092.1:ENST00000338205.9:ENST00000259335.8:ENST00000602447.5:ENST00000602978.1	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	3.77344	4.196165000000001	4.61889	0.0596635	0.0166646	0.189982	0.102621
chr7	132838969	132839068	3643450	0	-	0.454545	(0.44,0.476]	chr7	338836	1	INTRON	INTRON	CHCHD3	ENSG00000106554.13	ENST00000262570.10:ENST00000448878.6:ENST00000496427.5:ENST00000423635.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	55	2	3.26669	4.1959100000000005	5.12513	0.00305435	7.96486e-4	0.0493883	0.0258804
chr15	56951778	56951878	6032443	0	+	0.45	(0.44,0.476]	chr15	574663	303	INTRON	INTRON	TCF12	ENSG00000140262.18	ENST00000438423.6:ENST00000267811.9:ENST00000333725.10:ENST00000560190.5:ENST00000559609.5:ENST00000558908.5:ENST00000557843.5:ENST00000557947.5:ENST00000561152.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	73	2	2.59632	4.195805	5.79529	0.00579248	3.3977e-5	0.0662959	0.0046443
chrX	154079304	154079404	7912914	0	-	0.47	(0.44,0.476]	chrX	805637	58	INTRON	INTRON	MECP2	ENSG00000169057.24	ENST00000303391.11:ENST00000453960.7:ENST00000628176.2:ENST00000407218.5:ENST00000369957.5:ENST00000631210.1:ENST00000496908.5:ENST00000415944.3:ENST00000630151.2:ENST00000676382.1:ENST00000611468.2:ENST00000637533.1:ENST00000675526.1:ENST00000637791.1:ENST00000675841.1:ENST00000674996.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	73	2	2.59632	4.195805	5.79529	0.00579248	3.3977e-5	0.0662959	0.0046443
chr16	87755937	87756029	6538577	0	-	0.467391	(0.44,0.476]	chr16	633558	8	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	KLHDC4	ENSG00000104731.14	ENST00000567298.5:ENST00000270583.10:ENST00000347925.9:ENST00000353170.9:ENST00000562155.5:ENST00000622456.4:ENST00000562261.1:ENST00000566661.5:ENST00000564484.5:ENST00000565328.5:ENST00000569747.5:ENST00000564396.5:ENST00000568502.1:ENST00000561825.1:ENST00000568338.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	73	2	2.63508	4.195785	5.75649	0.00501007	4.17314e-5	0.0618077	0.00523306
chr1	218334586	218334686	317663	0	+	0.31	(0.28,0.32]	chr1	36404	36	UTR3	UTR3:EXON_MRNA	RRP15	ENSG00000067533.6	ENST00000366932.4	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	3.88145	4.1956299999999995	4.50981	0.0561985	0.0275554	0.18407	0.123904
chr10	74226486	74226586	4456523	0	+	0.3	(0.28,0.32]	chr10	411547	15	INTRON	INTRON	ADK	ENSG00000156110.15	ENST00000672429.1:ENST00000539909.6:ENST00000286621.7:ENST00000673352.1:ENST00000673310.1:ENST00000672920.1:ENST00000672394.1:ENST00000372734.5:ENST00000673027.1:ENST00000541550.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	27	2	3.88145	4.1956299999999995	4.50981	0.0561985	0.0275554	0.18407	0.123904
chr14	27562238	27562338	5848474	0	-	0.32	(0.28,0.32]	chr14	556260	2397	INTRON	INTRON	ENSG00000258932	ENSG00000258932.5	ENST00000553392.5:ENST00000554904.5:ENST00000556890.1:ENST00000555797.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	0	27	2	3.88145	4.1956299999999995	4.50981	0.0561985	0.0275554	0.18407	0.123904
chr2	178196971	178197071	928169	0	+	0.3	(0.28,0.32]	chr2	102003	19	INTRON	INTRON	OSBPL6	ENSG00000079156.17	ENST00000359685.7:ENST00000392505.6:ENST00000477646.1:ENST00000357080.8:ENST00000190611.9:ENST00000409045.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	27	2	3.88145	4.1956299999999995	4.50981	0.0561985	0.0275554	0.18407	0.123904
chr21	37250910	37251010	7462214	0	-	0.32	(0.28,0.32]	chr21	760247	99	INTRON	INTRON	VPS26C	ENSG00000157538.14	ENST00000399000.7:ENST00000309117.11:ENST00000399001.5:ENST00000476950.5:ENST00000488368.5:ENST00000398998.1:ENST00000480452.5:ENST00000475009.1:ENST00000492514.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	27	2	3.88145	4.1956299999999995	4.50981	0.0561985	0.0275554	0.18407	0.123904
chr4	38683055	38683154	1948777	0	+	0.30303	(0.28,0.32]	chr4	195077	20	INTRON	INTRON	KLF3	ENSG00000109787.13	ENST00000514033.1:ENST00000261438.10	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	3.88145	4.1956299999999995	4.50981	0.0561985	0.0275554	0.18407	0.123904
chr8	129506152	129506252	4060343	0	-	0.31	(0.28,0.32]	chr8	369642	110	INTRON	INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1:ENST00000676273.1:ENST00000667643.1:ENST00000668791.1:ENST00000663716.1:ENST00000663572.1:ENST00000676148.1:ENST00000667962.1:ENST00000674877.1:ENST00000675316.1:ENST00000674656.1:ENST00000446592.7:ENST00000667341.1:ENST00000675186.1:ENST00000652971.1:ENST00000661447.1:ENST00000674863.1:ENST00000675498.1:ENST00000675527.1:ENST00000676108.1:ENST00000657647.1:ENST00000675589.1:ENST00000675913.1:ENST00000675109.1:ENST00000671632.1:ENST00000671311.1:ENST00000676099.1:ENST00000660652.1:ENST00000675522.1:ENST00000675183.1:ENST00000658861.1:ENST00000663991.1:ENST00000675044.1:ENST00000675435.1:ENST00000674639.1:ENST00000676069.1:ENST00000675532.1:ENST00000674762.1:ENST00000523151.6:ENST00000675948.1:ENST00000665364.1:ENST00000657251.1:ENST00000675166.1:ENST00000674883.1:ENST00000675867.1:ENST00000674580.1:ENST00000675393.1:ENST00000520048.1:ENST00000674906.1:ENST00000676030.1:ENST00000670588.1:ENST00000675072.1:ENST00000664936.1:ENST00000652914.1:ENST00000657069.1	lncRNA	lncRNA	lncRNA	lncRNA	0	27	2	3.88145	4.1956299999999995	4.50981	0.0561985	0.0275554	0.18407	0.123904
chr14	74288768	74288857	5922016	0	-	0.539326	(0.515,0.57]	chr14	562579	1	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	ABCD4	ENSG00000119688.21	ENST00000356924.9:ENST00000481348.5:ENST00000481935.5:ENST00000553486.5:ENST00000556517.1:ENST00000553745.5:ENST00000474270.1:ENST00000484380.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	48	2	3.62821	4.195325	4.76244	0.00362147	4.12866e-4	0.0533855	0.0181365
chr10	60786280	60786378	4435850	0	+	0.234694	[0,0.28]	chr10	409184	6	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	CDK1	ENSG00000170312.17	ENST00000519078.6:ENST00000475504.6:ENST00000316629.8:ENST00000395284.8:ENST00000448257.6:ENST00000373809.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	358	2	3.39957	4.195195	4.99082	3.88858e-6	3.8688e-6	0.00142343	0.00130611
chr3	138817327	138817426	1831326	0	-	0.474747	(0.44,0.476]	chr3	184062	204	INTRON	INTRON	PIK3CB	ENSG00000051382.9	ENST00000674063.1:ENST00000477593.5:ENST00000462898.5:ENST00000483968.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	68	2	2.94321	4.194705	5.4462	0.00111162	5.83686e-4	0.0305384	0.0223753
chr19	12542435	12542535	7139867	0	-	0.45	(0.44,0.476]	chr19	720335	5	INTRON	INTRON	ZNF564	ENSG00000249709.8	ENST00000339282.12:ENST00000427105.1:ENST00000596193.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	51	2	3.36231	4.19467	5.02703	0.00278015	0.00161678	0.0469265	0.0369204
chr1	212765488	212765588	634517	0	-	0.46	(0.44,0.476]	chr1	74949	255	INTRON	INTRON	NSL1	ENSG00000117697.15	ENST00000366977.8:ENST00000366978.5:ENST00000366976.3:ENST00000626725.1	protein_coding	protein_coding	protein_coding	protein_coding	2	68	2	2.69297	4.1945250000000005	5.69608	0.00333494	2.01872e-4	0.0528877	0.0129814
chr1	12429197	12429297	30301	0	+	0.28	[0,0.28]	chr1	3762	120	INTRON	INTRON	VPS13D	ENSG00000048707.15	ENST00000620676.6:ENST00000613099.4:ENST00000011700.10:ENST00000646411.1:ENST00000543710.5:ENST00000645371.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	27	2	4.1879	4.19448	4.20106	0.0695895	0.0396579	0.184298	0.161534
chr1	231541565	231541663	337733	0	+	0.204082	[0,0.28]	chr1	39318	39	INTRON	INTRON	TSNAX	ENSG00000116918.15	ENST00000413309.3:ENST00000602825.5:ENST00000366639.9:ENST00000476913.1:ENST00000475168.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	27	2	4.1879	4.19448	4.20106	0.0695895	0.0396579	0.184298	0.161534
chr10	78010277	78010370	4655171	0	-	0.27957	[0,0.28]	chr10	428881	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	POLR3A	ENSG00000148606.14	ENST00000372371.8:ENST00000473588.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	27	2	4.1879	4.19448	4.20106	0.0695895	0.0396579	0.184298	0.161534
chr11	475650	475748	4719158	0	+	0.255102	[0,0.28]	chr11	436016	13	INTRON	INTRON	PTDSS2	ENSG00000174915.12	ENST00000532614.5:ENST00000308020.6:ENST00000531520.5:ENST00000525727.5:ENST00000527479.5:ENST00000526878.5:ENST00000530087.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	27	2	4.1879	4.19448	4.20106	0.0695895	0.0396579	0.184298	0.161534
chr11	603651	603747	4719853	0	+	0.15625	[0,0.28]	chr11	436210	16	INTRON	INTRON	PHRF1	ENSG00000070047.13	ENST00000264555.10:ENST00000416188.3:ENST00000534320.5:ENST00000413872.6:ENST00000533464.5:ENST00000532550.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	27	2	4.1879	4.19448	4.20106	0.0695895	0.0396579	0.184298	0.161534
chr15	83034227	83034327	6249107	0	-	0.27	[0,0.28]	chr15	596398	35	INTRON	INTRON	BTBD1	ENSG00000064726.10	ENST00000261721.9:ENST00000379403.2:ENST00000559652.5:ENST00000560015.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	27	2	4.1879	4.19448	4.20106	0.0695895	0.0396579	0.184298	0.161534
chr16	24772937	24773037	6329648	0	+	0.25	[0,0.28]	chr16	605945	142	INTRON	INTRON	TNRC6A	ENSG00000090905.19	ENST00000395799.8:ENST00000315183.11:ENST00000562829.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	27	2	4.1879	4.19448	4.20106	0.0695895	0.0396579	0.184298	0.161534
chr17	38813463	38813563	6764950	0	-	0.26	[0,0.28]	chr17	665364	2	INTRON	INTRON	CWC25	ENSG00000273559.5	ENST00000614790.5:ENST00000619299.4:ENST00000618122.4:ENST00000619818.4:ENST00000622665.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	27	2	4.1879	4.19448	4.20106	0.0695895	0.0396579	0.184298	0.161534
chr2	97254997	97255096	832323	0	+	0.232323	[0,0.28]	chr2	93269	30	INTRON	INTRON	ANKRD36	ENSG00000135976.21	ENST00000420699.9	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.1879	4.19448	4.20106	0.0695895	0.0396579	0.184298	0.161534
chr2	152715694	152715794	1246507	0	-	0.25	[0,0.28]	chr2	132367	3	SS5_PROX	SS5_PROX:INTRON	PRPF40A	ENSG00000196504.20	ENST00000410080.8:ENST00000545856.8:ENST00000696382.1:ENST00000696381.1:ENST00000354363.11:ENST00000493468.7:ENST00000448428.2:ENST00000489741.1:ENST00000450303.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	27	2	4.1879	4.19448	4.20106	0.0695895	0.0396579	0.184298	0.161534
chr2	208736469	208736569	996762	0	+	0.27	[0,0.28]	chr2	106920	791	INTRON	INTRON	PTH2R	ENSG00000144407.10	ENST00000419079.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	0	27	2	4.1879	4.19448	4.20106	0.0695895	0.0396579	0.184298	0.161534
chr3	87837018	87837117	1455455	0	+	0.262626	[0,0.28]	chr3	153149	145	INTRON	INTRON	HTR1F	ENSG00000179097.7	ENST00000319595.7	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.1879	4.19448	4.20106	0.0695895	0.0396579	0.184298	0.161534
chr3	87854310	87854410	1455628	0	+	0.24	[0,0.28]	chr3	153149	318	INTRON	INTRON	HTR1F	ENSG00000179097.7	ENST00000319595.7	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.1879	4.19448	4.20106	0.0695895	0.0396579	0.184298	0.161534
chr3	107564253	107564353	1470160	0	+	0.21	[0,0.28]	chr3	154137	375	INTRON	INTRON	BBX	ENSG00000114439.19	ENST00000415149.6:ENST00000402543.5:ENST00000325805.13:ENST00000485939.5:ENST00000427402.5:ENST00000416476.6:ENST00000454540.5:ENST00000449335.5:ENST00000431630.5:ENST00000458458.5:ENST00000456817.5:ENST00000456419.5:ENST00000402163.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	27	2	4.1879	4.19448	4.20106	0.0695895	0.0396579	0.184298	0.161534
chr3	197850290	197850388	1598323	0	+	0.193878	[0,0.28]	chr3	165630	19	INTRON	INTRON	LRCH3	ENSG00000186001.14	ENST00000438796.6:ENST00000428136.2:ENST00000425562.7:ENST00000441090.6:ENST00000414675.6:ENST00000334859.8:ENST00000461674.5:ENST00000452660.5:ENST00000433298.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	27	2	4.1879	4.19448	4.20106	0.0695895	0.0396579	0.184298	0.161534
chr5	81555598	81555698	2664401	0	-	0.27	[0,0.28]	chr5	252412	415	INTRON	INTRON	SSBP2	ENSG00000145687.17	ENST00000320672.9:ENST00000615665.4:ENST00000509053.5:ENST00000514493.5:ENST00000505980.5:ENST00000515395.5:ENST00000509743.6:ENST00000507655.5:ENST00000507472.5:ENST00000509013.2:ENST00000504174.5:ENST00000512098.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	27	2	4.1879	4.19448	4.20106	0.0695895	0.0396579	0.184298	0.161534
chr6	47618609	47618708	2874995	0	+	0.232323	[0,0.28]	chr6	272823	57	INTRON	INTRON	CD2AP	ENSG00000198087.7	ENST00000359314.5	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.1879	4.19448	4.20106	0.0695895	0.0396579	0.184298	0.161534
chr6	147681437	147681537	2990810	0	+	0.27	[0,0.28]	chr6	280163	49	INTRON	INTRON	ENSG00000227681	ENSG00000227681.5	ENST00000427015.1:ENST00000432506.5:ENST00000442094.5	lncRNA	lncRNA	lncRNA	lncRNA	0	27	2	4.1879	4.19448	4.20106	0.0695895	0.0396579	0.184298	0.161534
chr6	15502904	15503003	2825523	0	+	0.383838	(0.378,0.408]	chr6	265236	11	INTRON	INTRON	JARID2	ENSG00000008083.14	ENST00000341776.7:ENST00000397311.4:ENST00000474854.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	83	2	2.53602	4.194445	5.85287	0.0020933	1.39037e-4	0.0424943	0.0107072
chr1	227265120	227265207	651187	0	-	0.45977	(0.44,0.476]	chr1	77109	5	EXON_PSEUDO	EXON_PSEUDO:INTRON	CDC42BPA:ENSG00000236636	ENSG00000143776.20:ENSG00000236636.2	ENST00000366766.8:ENST00000366769.7:ENST00000334218.9:ENST00000366767.7:ENST00000366764.8:ENST00000478573.6:ENST00000682551.1:ENST00000420014.2	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:retained_intron:processed_pseudogene	1	51	2	3.08591	4.194405	5.3029	0.00481262	0.00102616	0.0638089	0.029231300000000002
chr7	87153632	87153727	3345628	0	+	0.4	(0.378,0.408]	chr7	311614	3	INTRON	INTRON	DMTF1	ENSG00000135164.19	ENST00000413276.6:ENST00000447863.5:ENST00000579677.5:ENST00000425406.5:ENST00000446796.6:ENST00000420131.5:ENST00000414630.6:ENST00000547146.6:ENST00000579850.5:ENST00000453049.5:ENST00000331242.12:ENST00000430405.7:ENST00000449088.7:ENST00000448598.5:ENST00000428819.5:ENST00000432937.6:ENST00000584619.5:ENST00000432366.6:ENST00000423590.6:ENST00000394703.9:ENST00000584457.5:ENST00000580710.5:ENST00000579592.5:ENST00000434534.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	95	2	2.28793	4.19417	6.10041	0.00291235	4.33573e-5	0.0494641	0.00561811
chr8	105381264	105381363	3837869	0	+	0.373737	(0.35,0.378]	chr8	354037	223	INTRON	INTRON	ZFPM2	ENSG00000169946.14	ENST00000518180.1:ENST00000407775.7:ENST00000520492.5:ENST00000520027.5:ENST00000524235.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	98	2	2.27866	4.19396	6.10926	0.00316333	5.85033e-5	0.0516574	0.00668534
chr12	54402656	54402743	5331333	0	-	0.425287	(0.408,0.44]	chr12	508777	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ITGA5	ENSG00000161638.11	ENST00000293379.9:ENST00000552564.5:ENST00000551564.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	86	2	3.04238	4.19393	5.34548	9.40657e-4	1.54233e-4	0.0280776	0.0106835
chr1	10314368	10314467	21725	0	+	0.363636	(0.35,0.378]	chr1	2189	59	INTRON	INTRON	KIF1B	ENSG00000054523.20	ENST00000676179.1:ENST00000263934.10:ENST00000696502.1:ENST00000696503.1:ENST00000696504.1:ENST00000377086.5:ENST00000377081.5:ENST00000620295.2:ENST00000622724.3	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	4.08816	4.193885	4.29961	0.046021	0.0158483	0.149888	0.109464
chr1	212324439	212324538	308468	0	+	0.363636	(0.35,0.378]	chr1	35576	50	INTRON	INTRON	PPP2R5A	ENSG00000066027.12	ENST00000261461.7:ENST00000537030.3:ENST00000498129.6:ENST00000479259.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	25	2	4.08816	4.193885	4.29961	0.046021	0.0158483	0.149888	0.109464
chr15	64243311	64243411	6203691	0	-	0.37	(0.35,0.378]	chr15	591722	262	INTRON	INTRON	CSNK1G1:ENSG00000259316	ENSG00000169118.18:ENSG00000259316.12	ENST00000303052.13:ENST00000607537.6:ENST00000561349.6:ENST00000635142.1:ENST00000634654.1:ENST00000634811.1:ENST00000606225.1:ENST00000606793.3:ENST00000634251.1:ENST00000634847.3:ENST00000635324.1:ENST00000635270.1:ENST00000635529.1:ENST00000634318.1:ENST00000635514.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	25	2	4.08816	4.193885	4.29961	0.046021	0.0158483	0.149888	0.109464
chr15	89097535	89097634	6094657	0	+	0.353535	(0.35,0.378]	chr15	579967	33	INTRON	INTRON	ABHD2	ENSG00000140526.18	ENST00000569411.5:ENST00000569550.5:ENST00000564876.5:ENST00000565066.5:ENST00000565973.5:ENST00000352732.10:ENST00000565825.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	25	2	4.08816	4.193885	4.29961	0.046021	0.0158483	0.149888	0.109464
chr2	28211349	28211449	723364	0	+	0.37	(0.35,0.378]	chr2	83668	816	INTRON	INTRON	BABAM2	ENSG00000158019.21	ENST00000344773.6:ENST00000379624.6:ENST00000342045.6:ENST00000379632.6:ENST00000361704.6:ENST00000379629.7	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	4.08816	4.193885	4.29961	0.046021	0.0158483	0.149888	0.109464
chr2	113748431	113748530	1216744	0	-	0.353535	(0.35,0.378]	chr2	129530	17	INTRON	INTRON	SLC35F5	ENSG00000115084.15	ENST00000245680.7:ENST00000409106.5:ENST00000409342.1:ENST00000498768.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	25	2	4.08816	4.193885	4.29961	0.046021	0.0158483	0.149888	0.109464
chr2	218743629	218743727	1019232	0	+	0.357143	(0.35,0.378]	chr2	108698	27	INTRON	INTRON	TTLL4	ENSG00000135912.11	ENST00000392102.6:ENST00000457313.5:ENST00000442769.5:ENST00000258398.8	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	4.08816	4.193885	4.29961	0.046021	0.0158483	0.149888	0.109464
chr20	49080883	49080981	7284145	0	+	0.377551	(0.35,0.378]	chr20	740884	19	INTRON	INTRON	CSE1L	ENSG00000124207.17	ENST00000396192.7:ENST00000262982.3	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	4.08816	4.193885	4.29961	0.046021	0.0158483	0.149888	0.109464
chr4	102849534	102849634	2213590	0	-	0.37	(0.35,0.378]	chr4	216779	215	INTRON	INTRON	UBE2D3	ENSG00000109332.20	ENST00000338145.7:ENST00000357194.10:ENST00000508238.5	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	4.08816	4.193885	4.29961	0.046021	0.0158483	0.149888	0.109464
chr4	139331873	139331973	2049995	0	+	0.36	(0.35,0.378]	chr4	203286	293	INTRON	INTRON	NAA15	ENSG00000164134.13	ENST00000296543.10:ENST00000398947.1:ENST00000482087.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	25	2	4.08816	4.193885	4.29961	0.046021	0.0158483	0.149888	0.109464
chr5	69253238	69253334	2380637	0	+	0.375	(0.35,0.378]	chr5	229284	4	INTRON	INTRON	CDK7	ENSG00000134058.12	ENST00000629350.2:ENST00000506563.5:ENST00000512687.5:ENST00000515391.5:ENST00000256443.8:ENST00000515180.5:ENST00000506789.5:ENST00000510106.5:ENST00000514676.5:ENST00000504147.5:ENST00000508726.5:ENST00000502604.5:ENST00000513629.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	25	2	4.08816	4.193885	4.29961	0.046021	0.0158483	0.149888	0.109464
chr6	157660125	157660225	3014348	0	+	0.37	(0.35,0.378]	chr6	281317	61	INTRON	INTRON	ZDHHC14	ENSG00000175048.17	ENST00000414563.6:ENST00000359775.10:ENST00000518214.5:ENST00000341375.12:ENST00000523706.5:ENST00000517432.5:ENST00000422910.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	25	2	4.08816	4.193885	4.29961	0.046021	0.0158483	0.149888	0.109464
chr7	148785068	148785166	3444567	0	+	0.377551	(0.35,0.378]	chr7	321240	6	INTRON	INTRON	CUL1	ENSG00000055130.18	ENST00000409469.5:ENST00000662716.1:ENST00000665936.1:ENST00000663044.1:ENST00000602748.5:ENST00000663835.1:ENST00000655324.1:ENST00000662132.1:ENST00000325222.9:ENST00000656001.1:ENST00000666124.1:ENST00000671421.1:ENST00000671397.1:ENST00000662670.1:ENST00000660240.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	25	2	4.08816	4.193885	4.29961	0.046021	0.0158483	0.149888	0.109464
chr9	37570628	37570727	4251633	0	-	0.353535	(0.35,0.378]	chr9	391555	285	INTRON	INTRON	FBXO10	ENSG00000147912.13	ENST00000432825.7:ENST00000276960.7:ENST00000541607.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	25	2	4.08816	4.193885	4.29961	0.046021	0.0158483	0.149888	0.109464
chr5	138169888	138169977	2731336	0	-	0.561798	(0.515,0.57]	chr5	257157	1	SS5_PROX	SS5_PROX:INTRON	BRD8	ENSG00000112983.18	ENST00000254900.10:ENST00000402931.5:ENST00000230901.9:ENST00000454473.5:ENST00000418329.5:ENST00000441656.5:ENST00000411594.6:ENST00000512140.5:ENST00000453824.1:ENST00000471892.6:ENST00000428808.5:ENST00000432618.5:ENST00000425764.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	62	2	3.00693	4.1938450000000005	5.38076	7.26845e-4	3.24968e-4	0.0245647	0.0165891
chr1	155839626	155839725	564274	0	-	0.363636	(0.35,0.378]	chr1	67384	63	INTRON	INTRON	GON4L	ENSG00000116580.20	ENST00000368331.6:ENST00000615926.4:ENST00000437809.5:ENST00000271883.9:ENST00000361040.9:ENST00000622608.2:ENST00000471341.5:ENST00000468867.1:ENST00000488251.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	25	2	4.19022	4.1936599999999995	4.1971	0.0367539	0.0209891	0.138959	0.122348
chr1	186397212	186397312	277767	0	+	0.36	(0.35,0.378]	chr1	32472	28	INTRON	INTRON	ODR4	ENSG00000157181.16	ENST00000367470.8:ENST00000287859.11:ENST00000419367.8	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	4.19022	4.1936599999999995	4.1971	0.0367539	0.0209891	0.138959	0.122348
chr1	200609727	200609827	617634	0	-	0.36	(0.35,0.378]	chr1	73076	4	INTRON	INTRON	KIF14	ENSG00000118193.12	ENST00000614960.4:ENST00000367350.5	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	4.19022	4.1936599999999995	4.1971	0.0367539	0.0209891	0.138959	0.122348
chr17	47485965	47486064	6789758	0	-	0.353535	(0.35,0.378]	chr17	669665	25	INTRON	INTRON	MRPL45P2	ENSG00000228782.8	ENST00000425159.7:ENST00000575291.5:ENST00000572695.5:ENST00000573318.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	25	2	4.19022	4.1936599999999995	4.1971	0.0367539	0.0209891	0.138959	0.122348
chr17	67344305	67344405	6825909	0	-	0.37	(0.35,0.378]	chr17	674574	3	SS5_PROX	SS5_PROX:INTRON	PSMD12	ENSG00000197170.10	ENST00000356126.8:ENST00000357146.4:ENST00000584008.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	25	2	4.19022	4.1936599999999995	4.1971	0.0367539	0.0209891	0.138959	0.122348
chr18	56021130	56021229	6911308	0	+	0.373737	(0.35,0.378]	chr18	684223	30	INTRON	INTRON	ENSG00000267327	ENSG00000267327.2	ENST00000589440.1:ENST00000666716.1:ENST00000588803.1	lncRNA	lncRNA	lncRNA	lncRNA	0	25	2	4.19022	4.1936599999999995	4.1971	0.0367539	0.0209891	0.138959	0.122348
chr3	33635969	33636068	1653173	0	-	0.373737	(0.35,0.378]	chr3	169635	32	INTRON	INTRON	CLASP2	ENSG00000163539.18	ENST00000399362.8:ENST00000682230.1:ENST00000468888.6:ENST00000359576.9:ENST00000650653.1:ENST00000480013.6:ENST00000461133.8:ENST00000635664.1:ENST00000313350.10:ENST00000487200.5:ENST00000333778.10:ENST00000485378.6:ENST00000496954.2:ENST00000476433.5:ENST00000482896.5:ENST00000498331.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	25	2	4.19022	4.1936599999999995	4.1971	0.0367539	0.0209891	0.138959	0.122348
chr6	170543100	170543200	3267574	0	-	0.37	(0.35,0.378]	chr6	303368	1	SS5_PROX	SS5_PROX:INTRON	PSMB1	ENSG00000008018.9	ENST00000262193.7:ENST00000462957.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	25	2	4.19022	4.1936599999999995	4.1971	0.0367539	0.0209891	0.138959	0.122348
chr1	179971002	179971102	267599	0	+	0.39	(0.378,0.408]	chr1	31299	16	INTRON	INTRON	CEP350	ENSG00000135837.16	ENST00000491495.2:ENST00000367607.8	protein_coding	protein_coding	protein_coding	protein_coding	3	83	2	2.50099	4.193614999999999	5.88624	0.00245021	1.19481e-4	0.0457892	0.00988798
chr22	19082485	19082585	7551614	0	-	0.61	(0.57,1]	chr22	771897	139	INTRON	INTRON	DGCR2	ENSG00000070413.20	ENST00000537045.5:ENST00000545799.5:ENST00000263196.12:ENST00000389262.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	35	2	3.42323	4.193295	4.96336	8.58388e-4	2.05554e-4	0.0267428	0.0124557
chr15	44462989	44463089	6014706	0	+	0.36	(0.35,0.378]	chr15	572922	34	INTRON	INTRON	CTDSPL2	ENSG00000137770.14	ENST00000558791.5:ENST00000260327.9:ENST00000560834.1:ENST00000558966.5:ENST00000559793.5:ENST00000558968.1:ENST00000558373.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	59	2	3.2953	4.1929099999999995	5.09052	0.0031465	0.00123501	0.0500431	0.0326215
chr10	42352618	42352708	4603300	0	-	0.322222	(0.32,0.35]	chr10	424078	3	SS5_PROX	SS5_PROX:INTRON	ENSG00000215146	ENSG00000215146.5	ENST00000609841.1:ENST00000650175.1:ENST00000423987.2:ENST00000609034.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	1	63	2	3.38612	4.19267	4.99922	0.00249604	0.00223907	0.0446195	0.0435144
chr2	183156443	183156543	938806	0	+	0.53	(0.515,0.57]	chr2	103001	44	INTRON	INTRON	NUP35	ENSG00000163002.13	ENST00000409798.5:ENST00000374930.7:ENST00000479162.5:ENST00000295119.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	49	2	3.25547	4.192605	5.12974	0.00261721	4.54392e-4	0.0455413	0.0192381
chr13	111282732	111282827	5546010	0	+	0.431579	(0.408,0.44]	chr13	529868	2	SS3_PROX	SS3_PROX:INTRON	ARHGEF7	ENSG00000102606.19	ENST00000317133.9:ENST00000375739.6:ENST00000375741.6:ENST00000646102.2:ENST00000469877.5:ENST00000466143.5:ENST00000218789.9:ENST00000375736.8:ENST00000426073.6:ENST00000375723.5:ENST00000478679.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	112	2	4.01292	4.192385	4.37185	1.20325e-4	8.42461e-6	0.00992311	0.00209893
chr3	25650259	25650359	1642023	0	-	0.38	(0.378,0.408]	chr3	168598	44	INTRON	INTRON	TOP2B	ENSG00000077097.16	ENST00000264331.9:ENST00000435706.6:ENST00000424225.1	protein_coding	protein_coding	protein_coding	protein_coding	1	52	2	3.3797	4.192145	5.00459	0.00371142	0.00154501	0.0535094	0.0362716
chr15	44461394	44461494	6014690	0	+	0.43	(0.408,0.44]	chr15	572922	18	INTRON	INTRON	CTDSPL2	ENSG00000137770.14	ENST00000558791.5:ENST00000260327.9:ENST00000560834.1:ENST00000558966.5:ENST00000559793.5:ENST00000558968.1:ENST00000558373.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	51	2	3.36378	4.19203	5.02028	0.00303216	0.0016048	0.0493883	0.0367961
chr18	792346	792445	6940506	0	-	0.424242	(0.408,0.44]	chr18	686525	40	INTRON	INTRON	YES1	ENSG00000176105.14	ENST00000584307.5:ENST00000314574.5:ENST00000577611.1:ENST00000581960.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	51	2	3.36378	4.19203	5.02028	0.00303216	0.0016048	0.0493883	0.0367961
chr6	85568059	85568144	3150677	0	-	0.270588	[0,0.28]	chr6	293817	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	ENSG00000271793:SNX14	ENSG00000271793.2:ENSG00000135317.14	ENST00000682083.1:ENST00000683074.1:ENST00000681965.1:ENST00000682171.1:ENST00000684150.1:ENST00000683785.1:ENST00000682497.1:ENST00000684647.1:ENST00000683643.1:ENST00000682023.1:ENST00000682022.1:ENST00000683542.1:ENST00000683126.1:ENST00000683857.1:ENST00000683898.1:ENST00000682854.1:ENST00000682491.1:ENST00000682174.1:ENST00000684239.1:ENST00000682939.1:ENST00000684570.1:ENST00000682057.1:ENST00000682878.1:ENST00000683880.1:ENST00000684422.1:ENST00000682504.1:ENST00000683726.1:ENST00000684680.1:ENST00000683196.1:ENST00000683458.1:ENST00000683803.1:ENST00000684281.1:ENST00000682991.1:ENST00000683754.1:ENST00000683481.1:ENST00000682455.1:ENST00000682034.1:ENST00000684451.1:ENST00000683583.1:ENST00000682776.1:ENST00000683873.1:ENST00000683878.1:ENST00000683195.1:ENST00000682995.1:ENST00000682374.1:ENST00000683698.1:ENST00000682454.1:ENST00000682694.1:ENST00000682412.1:ENST00000682682.1:ENST00000346348.7:ENST00000314673.8:ENST00000682633.1:ENST00000683085.1:ENST00000682688.1:ENST00000684319.1:ENST00000683577.1:ENST00000682709.1:ENST00000684299.1:ENST00000682133.1:ENST00000682594.1:ENST00000683473.1:ENST00000682106.1:ENST00000683364.1:ENST00000683436.1:ENST00000684220.1:ENST00000683909.1:ENST00000684118.1:ENST00000681981.1:ENST00000682738.1:ENST00000509338.6:ENST00000684717.1:ENST00000682660.1:ENST00000683073.1:ENST00000515216.6:ENST00000684581.1:ENST00000683479.1:ENST00000682464.1:ENST00000684108.1:ENST00000682514.1:ENST00000684017.1:ENST00000684273.1:ENST00000513865.5:ENST00000505648.5:ENST00000508980.5:ENST00000369627.6:ENST00000503491.5:ENST00000508658.6:ENST00000683097.1:ENST00000683541.1:ENST00000683759.1:ENST00000369635.7:ENST00000684462.1:ENST00000682168.1:ENST00000513869.2:ENST00000514419.6:ENST00000683999.1:ENST00000503906.1:ENST00000683727.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	63	2	3.2223	4.1918	5.1613	0.00866441	0.00422777	0.0787025	0.0595466
chr5	95655157	95655254	2430754	0	+	0.278351	[0,0.28]	chr5	233591	4	INTRON	INTRON	RFESD	ENSG00000175449.14	ENST00000511684.5:ENST00000380005.9:ENST00000311364.8:ENST00000458310.1:ENST00000513950.2	protein_coding	protein_coding	protein_coding	protein_coding	1	69	2	2.89982	4.191445	5.48307	0.0158893	9.62922e-4	0.101453	0.0285195
chr7	140466509	140466609	3661497	0	-	0.58	(0.57,1]	chr7	339916	59	INTRON	INTRON	MKRN1	ENSG00000133606.11	ENST00000255977.7:ENST00000475010.5:ENST00000495305.5:ENST00000474576.5:ENST00000480552.5:ENST00000496169.5:ENST00000443720.6:ENST00000471104.5:ENST00000467513.5:ENST00000494939.1:ENST00000498535.1:ENST00000473444.1:ENST00000475180.5:ENST00000481705.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	45	2	3.2525	4.191355	5.13021	1.55446e-4	1.21664e-4	0.0106835	0.00992813
chr1	35097866	35097966	68097	0	+	0.52	(0.515,0.57]	chr1	8681	3	SS5_PROX	SS5_PROX:INTRON	ZMYM1	ENSG00000197056.11	ENST00000650449.1:ENST00000611874.4:ENST00000417119.5:ENST00000359858.9:ENST00000488455.5:ENST00000373330.1:ENST00000373329.5:ENST00000475654.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	66	2	3.40472	4.19097	4.97722	0.00168681	8.47527e-5	0.0370386	0.0077763
chr15	63537955	63538055	6042246	0	+	0.36	(0.35,0.378]	chr15	575394	4	INTRON	INTRON	USP3	ENSG00000140455.17	ENST00000540797.5:ENST00000380324.8:ENST00000561442.5:ENST00000560070.5:ENST00000557884.5:ENST00000558157.5:ENST00000561326.5:ENST00000559873.5:ENST00000559192.5:ENST00000559771.5:ENST00000268049.11:ENST00000558285.5:ENST00000559257.5:ENST00000538686.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	86	2	2.69	4.190945	5.69189	0.00107271	3.71413e-4	0.0300133	0.0178698
chr11	457365	457464	4718971	0	+	0.444444	(0.44,0.476]	chr11	436005	55	INTRON	INTRON	PTDSS2	ENSG00000174915.12	ENST00000532614.5:ENST00000308020.6:ENST00000531520.5:ENST00000528617.5:ENST00000525727.5:ENST00000525059.1:ENST00000526558.1:ENST00000527479.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	68	2	2.64669	4.19026	5.73383	0.0040295	1.70474e-4	0.0578376	0.0119761
chr2	177247639	177247739	1275676	0	-	0.43	(0.408,0.44]	chr2	134708	130	INTRON	INTRON	NFE2L2	ENSG00000116044.16	ENST00000397063.8:ENST00000464747.5:ENST00000397062.8:ENST00000446151.6:ENST00000449627.1:ENST00000448782.5:ENST00000430047.1:ENST00000586532.5:ENST00000421929.5:ENST00000423513.5:ENST00000588123.1:ENST00000477534.1:ENST00000462023.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	150	2	3.59766	4.19015	4.78264	6.08042e-5	5.61251e-7	0.00685407	4.02348e-4
chr3	179375019	179375119	1567213	0	+	0.27	[0,0.28]	chr3	162117	4	SS3_PROX	SS3_PROX:INTRON	MFN1	ENSG00000171109.19	ENST00000471841.6:ENST00000357390.8:ENST00000263969.9:ENST00000474903.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	102	2	2.42871	4.18999	5.95127	0.00461175	7.37141e-4	0.0626113	0.02495
chr19	21730986	21731086	7158932	0	-	0.29	(0.28,0.32]	chr19	723706	26	INTRON	INTRON	ZNF100	ENSG00000197020.12	ENST00000358296.11:ENST00000305570.10:ENST00000594401.1	protein_coding	protein_coding	protein_coding	protein_coding	2	86	2	2.4387	4.1899750000000004	5.94125	0.0126802	6.50094e-5	0.0926667	0.00668837
chr2	151473563	151473663	893877	0	+	0.3	(0.28,0.32]	chr2	99049	2	SS3_PROX	SS3_PROX:INTRON	RIF1	ENSG00000080345.18	ENST00000453091.6:ENST00000428287.6:ENST00000444746.7:ENST00000243326.9:ENST00000430328.6:ENST00000454583.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	59	2	2.86113	4.1899049999999995	5.51868	0.0122675	0.00162747	0.0969406	0.0367966
chr1	28959746	28959846	59408	0	+	0.29	(0.28,0.32]	chr1	7621	446	INTRON	INTRON	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000647918.1:ENST00000646800.1:ENST00000644342.1:ENST00000646189.1:ENST00000482464.6:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000646260.1:ENST00000373798.5:ENST00000644600.1:ENST00000649674.1:ENST00000643173.1:ENST00000343067.9:ENST00000644780.1:ENST00000650265.1:ENST00000648181.1:ENST00000643604.1:ENST00000648891.1:ENST00000373797.2:ENST00000349460.9:ENST00000645184.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	26	2	4.14214	4.189665	4.23719	0.0579756	0.0264147	0.167723	0.133676
chr1	185152926	185153025	603420	0	-	0.292929	(0.28,0.32]	chr1	71857	6	INTRON	INTRON	TRMT1L	ENSG00000121486.12	ENST00000367506.10:ENST00000487028.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	26	2	4.14214	4.189665	4.23719	0.0579756	0.0264147	0.167723	0.133676
chr12	68827227	68827326	5163180	0	+	0.292929	(0.28,0.32]	chr12	488934	22	INTRON	INTRON	MDM2	ENSG00000135679.27	ENST00000258149.11:ENST00000393412.7:ENST00000311420.13:ENST00000393417.8:ENST00000258148.11:ENST00000539479.6:ENST00000523991.5:ENST00000543323.5:ENST00000393415.7:ENST00000393416.7:ENST00000481186.6:ENST00000545204.2:ENST00000544561.6:ENST00000665020.1:ENST00000666617.1:ENST00000671567.1:ENST00000393410.5:ENST00000496959.5:ENST00000299252.8:ENST00000360430.6:ENST00000517852.5:ENST00000546048.5:ENST00000540352.5:ENST00000542502.5:ENST00000537182.5:ENST00000536089.5:ENST00000393413.7:ENST00000350057.9:ENST00000348801.7:ENST00000478070.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	26	2	4.14214	4.189665	4.23719	0.0579756	0.0264147	0.167723	0.133676
chr12	69479798	69479898	5164347	0	+	0.29	(0.28,0.32]	chr12	489128	1	SS3_PROX	SS3_PROX:INTRON	FRS2	ENSG00000166225.9	ENST00000547219.5:ENST00000550316.5:ENST00000547414.5:ENST00000548154.5:ENST00000549921.6:ENST00000550389.5:ENST00000550937.5:ENST00000549092.5:ENST00000550169.5	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.14214	4.189665	4.23719	0.0579756	0.0264147	0.167723	0.133676
chr2	148016913	148017013	1242739	0	-	0.3	(0.28,0.32]	chr2	131884	345	INTRON	INTRON	ORC4	ENSG00000115947.14	ENST00000392857.10:ENST00000264169.6:ENST00000536575.5:ENST00000535373.5:ENST00000540442.5:ENST00000461711.5:ENST00000490200.5:ENST00000416719.5:ENST00000457954.5:ENST00000440042.1:ENST00000495601.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	26	2	4.14214	4.189665	4.23719	0.0579756	0.0264147	0.167723	0.133676
chr2	188250531	188250631	1295026	0	-	0.31	(0.28,0.32]	chr2	135671	216	INTRON	INTRON	LINC01090	ENSG00000231689.3	ENST00000434418.2:ENST00000632331.1:ENST00000415357.1	lncRNA	lncRNA	lncRNA	lncRNA	0	26	2	4.14214	4.189665	4.23719	0.0579756	0.0264147	0.167723	0.133676
chr2	215943078	215943177	1327012	0	-	0.282828	(0.28,0.32]	chr2	138886	6	UTR3	UTR3:EXON_MRNA	MREG	ENSG00000118242.16	ENST00000263268.11:ENST00000620139.4	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.14214	4.189665	4.23719	0.0579756	0.0264147	0.167723	0.133676
chr20	31701666	31701766	7325160	0	-	0.31	(0.28,0.32]	chr20	745996	167	INTRON	INTRON	BCL2L1	ENSG00000171552.14	ENST00000376055.9:ENST00000376062.6:ENST00000307677.5:ENST00000420488.6:ENST00000439267.2:ENST00000678563.1:ENST00000456404.6:ENST00000676942.1:ENST00000676582.1:ENST00000434194.2:ENST00000677194.1:ENST00000678671.1:ENST00000677494.1:ENST00000422920.2:ENST00000450273.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	26	2	4.14214	4.189665	4.23719	0.0579756	0.0264147	0.167723	0.133676
chr21	22277106	22277206	7385139	0	+	0.3	(0.28,0.32]	chr21	752727	639	INTRON	INTRON	ENSG00000226043	ENSG00000226043.2	ENST00000667099.1:ENST00000654607.1:ENST00000444130.1	lncRNA	lncRNA	lncRNA	lncRNA	0	26	2	4.14214	4.189665	4.23719	0.0579756	0.0264147	0.167723	0.133676
chr3	31605142	31605241	1392123	0	+	0.313131	(0.28,0.32]	chr3	145710	43	INTRON	INTRON	STT3B	ENSG00000163527.10	ENST00000453168.5:ENST00000295770.4:ENST00000423527.5:ENST00000462235.5:ENST00000436236.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	26	2	4.14214	4.189665	4.23719	0.0579756	0.0264147	0.167723	0.133676
chr3	161246852	161246948	1546457	0	+	0.302083	(0.28,0.32]	chr3	160875	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NMD3	ENSG00000169251.13	ENST00000472947.5:ENST00000351193.7:ENST00000460469.1	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.14214	4.189665	4.23719	0.0579756	0.0264147	0.167723	0.133676
chr6	154862159	154862254	3003128	0	+	0.284211	(0.28,0.32]	chr6	280857	8	INTRON	INTRON	TIAM2	ENSG00000146426.19	ENST00000461783.7:ENST00000535064.1:ENST00000460692.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	26	2	4.14214	4.189665	4.23719	0.0579756	0.0264147	0.167723	0.133676
chr7	138496291	138496391	3435001	0	+	0.32	(0.28,0.32]	chr7	319959	346	INTRON	INTRON	TRIM24	ENSG00000122779.18	ENST00000343526.9:ENST00000415680.6:ENST00000497516.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	26	2	4.14214	4.189665	4.23719	0.0579756	0.0264147	0.167723	0.133676
chr8	140930703	140930803	4079369	0	-	0.32	(0.28,0.32]	chr8	370568	29	INTRON	INTRON	PTK2	ENSG00000169398.20	ENST00000696786.1:ENST00000522684.5:ENST00000395218.3:ENST00000521059.5:ENST00000519993.5:ENST00000340930.7:ENST00000519419.5:ENST00000524357.5:ENST00000521791.5:ENST00000523067.5:ENST00000520828.5:ENST00000520475.5:ENST00000519881.5:ENST00000520892.5:ENST00000523803.5:ENST00000521907.5:ENST00000517453.5:ENST00000520045.5:ENST00000521395.5:ENST00000521332.5:ENST00000524040.5:ENST00000523679.1:ENST00000524257.5:ENST00000523797.1:ENST00000519635.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	26	2	4.14214	4.189665	4.23719	0.0579756	0.0264147	0.167723	0.133676
chrX	53571690	53571788	7820700	0	-	0.306122	(0.28,0.32]	chrX	797990	15	INTRON	INTRON	HUWE1	ENSG00000086758.16	ENST00000262854.11:ENST00000342160.7:ENST00000612484.4	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.14214	4.189665	4.23719	0.0579756	0.0264147	0.167723	0.133676
chr1	42701713	42701796	84143	0	+	0.301205	(0.28,0.32]	chr1	11049	3	SS3_PROX	SS3_PROX:INTRON	YBX1	ENSG00000065978.19	ENST00000321358.12:ENST00000436427.1	protein_coding	protein_coding	protein_coding	protein_coding	6	131	2	2.09576	4.18944	6.28312	0.00323062	8.10771e-5	0.0524329	0.00807106
chr1	248846259	248846356	351925	0	+	0.371134	(0.35,0.378]	chr1	40692	2	INTRON	INTRON	ZNF672	ENSG00000171161.13	ENST00000510904.5:ENST00000306562.8:ENST00000505503.5:ENST00000428515.5:ENST00000502697.5:ENST00000515369.5:ENST00000423362.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	54	2	2.92952	4.189355	5.44919	0.00881187	9.66659e-4	0.084878	0.0282401
chr2	32178793	32178892	729909	0	+	0.353535	(0.35,0.378]	chr2	84166	8	INTRON	INTRON	SLC30A6	ENSG00000152683.14	ENST00000357055.7:ENST00000435660.5:ENST00000282587.9:ENST00000449777.5:ENST00000454324.5:ENST00000379343.6:ENST00000440718.5:ENST00000406369.2:ENST00000457724.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	54	2	2.92952	4.189355	5.44919	0.00881187	9.66659e-4	0.084878	0.0282401
chr3	37254376	37254476	1395865	0	+	0.25	[0,0.28]	chr3	146319	25	INTRON	INTRON	GOLGA4	ENSG00000144674.17	ENST00000435830.6:ENST00000444882.5:ENST00000356847.8:ENST00000450863.6:ENST00000361924.7:ENST00000429018.5:ENST00000431105.1:ENST00000419177.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	107	2	2.82515	4.189355	5.55356	0.00278704	8.72498e-4	0.0469265	0.0268436
chr4	126552112	126552212	2236230	0	-	0.24	[0,0.28]	chr4	219023	866	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	1	69	2	2.9385	4.18909	5.43968	0.0142776	0.00113119	0.0963703	0.0308465
chr10	11593531	11593631	4555887	0	-	0.27	[0,0.28]	chr10	420461	198	INTRON	INTRON	USP6NL	ENSG00000148429.15	ENST00000609104.6:ENST00000606752.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	64	2	3.3753	4.188965	5.00263	0.013055	0.00242466	0.093385	0.0454587
chr19	10656085	10656184	7013229	0	+	0.444444	(0.44,0.476]	chr19	696757	1	INTRON	INTRON	ILF3	ENSG00000129351.17	ENST00000449870.5:ENST00000587928.5:ENST00000407004.7:ENST00000589998.5:ENST00000589600.5:ENST00000589283.5:ENST00000590009.5:ENST00000593199.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	54	2	3.02751	4.188915	5.35032	0.00715968	3.02713e-4	0.0723634	0.0155054
chr1	46354623	46354723	96818	0	+	0.43	(0.408,0.44]	chr1	13015	12	INTRON	INTRON	NSUN4	ENSG00000117481.11	ENST00000307089.7:ENST00000486270.5:ENST00000474844.6:ENST00000537428.2:ENST00000498008.5:ENST00000495427.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	52	2	3.55215	4.188725	4.8253	0.0056738	7.01039e-4	0.0653997	0.0241881
chr2	86156621	86156719	1170761	0	-	0.367347	(0.35,0.378]	chr2	124943	27	INTRON	INTRON	IMMT	ENSG00000132305.22	ENST00000449247.6:ENST00000254636.9:ENST00000410111.8:ENST00000442664.6:ENST00000419070.6:ENST00000409051.6	protein_coding	protein_coding	protein_coding	protein_coding	2	71	2	2.80179	4.188715	5.57564	0.00223906	5.93654e-4	0.0435144	0.0225024
chr6	170615911	170616011	3037610	0	+	0.16	[0,0.28]	chr6	283172	3	SS5_PROX	SS5_PROX:INTRON	ENSG00000287411:ENSG00000230423	ENSG00000287411.1:ENSG00000230423.3	ENST00000667394.1:ENST00000656791.1	lncRNA	lncRNA	lncRNA	lncRNA	1	64	2	2.74901	4.188470000000001	5.62793	0.0188843	0.0022037	0.118148	0.0417893
chr7	155676409	155676509	3452214	0	+	0.4	(0.378,0.408]	chr7	322654	31	INTRON	INTRON	RBM33	ENSG00000184863.11	ENST00000287912.7:ENST00000401878.8:ENST00000392759.7:ENST00000307403.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	69	2	2.90835	4.18834	5.46833	0.00133715	7.05018e-4	0.0335955	0.024224
chr16	313347	313446	6426462	0	-	0.474747	(0.44,0.476]	chr16	617494	29	INTRON	INTRON	AXIN1	ENSG00000103126.15	ENST00000262320.8:ENST00000461023.5:ENST00000354866.7:ENST00000481769.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	51	2	3.41176	4.188335	4.96491	0.0034249	0.00130987	0.0517761	0.0333932
chr22	38732692	38732791	7514592	0	+	0.515152	(0.476,0.515]	chr22	767662	21	UTR3	UTR3:EXON_MRNA:INTRON	GTPBP1	ENSG00000100226.16	ENST00000216044.10:ENST00000458073.5:ENST00000484971.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	272	2	3.65162	4.188295	4.72497	8.06122e-7	4.10693e-8	5.07506e-4	7.91408e-5
chr1	45631997	45632096	440028	0	-	0.393939	(0.378,0.408]	chr1	53310	10	INTRON	INTRON	GPBP1L1	ENSG00000159592.11	ENST00000290795.7:ENST00000355105.8:ENST00000479235.5:ENST00000468724.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	25	2	3.96471	4.1882	4.41169	0.032421	0.0199606	0.145026	0.109608
chr1	156332552	156332652	566652	0	-	0.39	(0.378,0.408]	chr1	68009	71	INTRON	INTRON	CCT3	ENSG00000163468.15	ENST00000295688.8:ENST00000368258.7:ENST00000368259.6:ENST00000368262.7:ENST00000472765.6:ENST00000413555.5:ENST00000496684.6:ENST00000533194.5:ENST00000463132.5:ENST00000446905.5:ENST00000490221.5:ENST00000478640.6:ENST00000415548.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	25	2	3.96471	4.1882	4.41169	0.032421	0.0199606	0.145026	0.109608
chr15	28640058	28640158	5988429	0	+	0.39	(0.378,0.408]	chr15	569302	4	SS3_PROX	SS3_PROX:INTRON	HERC2P9	ENSG00000206149.11	ENST00000689985.1:ENST00000529624.5:ENST00000524476.5:ENST00000529353.1	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript:transcribed_unprocessed_pseudogene	0	25	2	3.96471	4.1882	4.41169	0.032421	0.0199606	0.145026	0.109608
chr15	75395857	75395957	6223498	0	-	0.38	(0.378,0.408]	chr15	594443	2	SS5_PROX	SS5_PROX:INTRON	SIN3A	ENSG00000169375.16	ENST00000394947.8:ENST00000360439.8:ENST00000394949.8	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	3.96471	4.1882	4.41169	0.032421	0.0199606	0.145026	0.109608
chr16	14869432	14869532	6304377	0	+	0.4	(0.378,0.408]	chr16	602994	4	INTRON	INTRON	NOMO1	ENSG00000103512.16	ENST00000287667.12	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	3.96471	4.1882	4.41169	0.032421	0.0199606	0.145026	0.109608
chr16	16029510	16029610	6308561	0	+	0.39	(0.378,0.408]	chr16	603534	125	INTRON	INTRON	ABCC1	ENSG00000103222.20	ENST00000574224.2:ENST00000678422.1:ENST00000677164.1:ENST00000399408.7:ENST00000572882.3:ENST00000399410.8:ENST00000679043.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	25	2	3.96471	4.1882	4.41169	0.032421	0.0199606	0.145026	0.109608
chr16	18170721	18170821	6454342	0	-	0.4	(0.378,0.408]	chr16	621964	193	INTRON	INTRON	ENSG00000260242	ENSG00000260242.1	ENST00000563866.1	lncRNA	lncRNA	lncRNA	lncRNA	0	25	2	3.96471	4.1882	4.41169	0.032421	0.0199606	0.145026	0.109608
chr16	89419517	89419610	6542888	0	-	0.397849	(0.378,0.408]	chr16	634267	8	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	25	2	3.96471	4.1882	4.41169	0.032421	0.0199606	0.145026	0.109608
chr17	1347561	1347661	6699071	0	-	0.39	(0.378,0.408]	chr17	655514	2	SS5_PROX	SS5_PROX:INTRON	YWHAE	ENSG00000108953.17	ENST00000264335.13:ENST00000466227.6:ENST00000571732.5:ENST00000573026.1:ENST00000496706.1:ENST00000573196.5:ENST00000575977.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	25	2	3.96471	4.1882	4.41169	0.032421	0.0199606	0.145026	0.109608
chr2	33130401	33130501	737296	0	+	0.4	(0.378,0.408]	chr2	84888	193	INTRON	INTRON	LTBP1	ENSG00000049323.16	ENST00000404816.7	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	3.96471	4.1882	4.41169	0.032421	0.0199606	0.145026	0.109608
chr2	55417320	55417420	1124373	0	-	0.39	(0.378,0.408]	chr2	120585	5	EXON_MRNA	EXON_MRNA:INTRON	CCDC88A	ENSG00000115355.18	ENST00000263630.13:ENST00000436346.7:ENST00000336838.10:ENST00000642200.1:ENST00000413716.7:ENST00000643413.1:ENST00000647401.1:ENST00000645311.1:ENST00000646796.1:ENST00000645571.1:ENST00000645477.1:ENST00000645072.1:ENST00000644890.1:ENST00000644630.1:ENST00000647098.1:ENST00000642890.1:ENST00000647517.1:ENST00000645031.1:ENST00000645529.1:ENST00000644033.1:ENST00000644193.1:ENST00000647341.1:ENST00000644127.1:ENST00000644157.1:ENST00000471947.2:ENST00000642514.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	25	2	3.96471	4.1882	4.41169	0.032421	0.0199606	0.145026	0.109608
chr2	127347090	127347190	1223403	0	-	0.38	(0.378,0.408]	chr2	130286	35	INTRON	INTRON	MAP3K2	ENSG00000169967.17	ENST00000682094.1:ENST00000409947.5	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	3.96471	4.1882	4.41169	0.032421	0.0199606	0.145026	0.109608
chr22	41303670	41303770	7522724	0	+	0.39	(0.378,0.408]	chr22	768798	15	INTRON	INTRON	ZC3H7B	ENSG00000100403.12	ENST00000352645.5:ENST00000486331.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	25	2	3.96471	4.1882	4.41169	0.032421	0.0199606	0.145026	0.109608
chr22	41802055	41802154	7525687	0	+	0.383838	(0.378,0.408]	chr22	769315	9	INTRON	INTRON	CCDC134	ENSG00000100147.14	ENST00000255784.6:ENST00000402061.7	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	3.96471	4.1882	4.41169	0.032421	0.0199606	0.145026	0.109608
chr3	25622614	25622714	1641718	0	-	0.4	(0.378,0.408]	chr3	168497	14	INTRON	INTRON	TOP2B	ENSG00000077097.16	ENST00000264331.9:ENST00000435706.6:ENST00000424225.1	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	3.96471	4.1882	4.41169	0.032421	0.0199606	0.145026	0.109608
chr4	39972527	39972627	2132151	0	-	0.39	(0.378,0.408]	chr4	210242	440	INTRON	INTRON	PDS5A	ENSG00000121892.15	ENST00000303538.13:ENST00000503396.5	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	3.96471	4.1882	4.41169	0.032421	0.0199606	0.145026	0.109608
chr4	139322975	139323075	2049906	0	+	0.38	(0.378,0.408]	chr4	203286	204	INTRON	INTRON	NAA15	ENSG00000164134.13	ENST00000296543.10:ENST00000398947.1:ENST00000482087.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	25	2	3.96471	4.1882	4.41169	0.032421	0.0199606	0.145026	0.109608
chr8	65650181	65650281	3773491	0	+	0.39	(0.378,0.408]	chr8	349956	50	INTRON	INTRON	MTFR1	ENSG00000066855.16	ENST00000262146.9:ENST00000522239.5:ENST00000523222.5:ENST00000523170.5:ENST00000424808.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	25	2	3.96471	4.1882	4.41169	0.032421	0.0199606	0.145026	0.109608
chr1	6189577	6189675	366098	0	-	0.428571	(0.408,0.44]	chr1	43018	24	INTRON	INTRON	RPL22	ENSG00000116251.11	ENST00000234875.9:ENST00000480661.1:ENST00000497965.5:ENST00000471204.5:ENST00000465387.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	52	2	2.89193	4.188045	5.48416	0.00950364	5.43528e-4	0.0863579	0.0215026
chr20	34099329	34099427	7329500	0	-	0.326531	(0.32,0.35]	chr20	746521	3	INTRON	INTRON	EIF2S2	ENSG00000125977.7	ENST00000374980.3	protein_coding	protein_coding	protein_coding	protein_coding	3	89	2	2.53533	4.188005	5.84068	0.00233994	3.015e-4	0.0442989	0.0160895
chr17	57549298	57549398	6635692	0	+	0.47	(0.44,0.476]	chr17	648072	192	INTRON	INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000674961.1:ENST00000582453.5:ENST00000675656.1:ENST00000322684.7:ENST00000442934.6:ENST00000579180.2:ENST00000579205.5:ENST00000579505.5:ENST00000582772.1:ENST00000674898.1:ENST00000674574.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	75	2	2.97428	4.1879	5.40152	0.00125568	2.39829e-4	0.0323608	0.0136403
chr4	53391598	53391698	1959591	0	+	0.34	(0.32,0.35]	chr4	196430	1	SS5_PROX	SS5_PROX:INTRON	FIP1L1	ENSG00000145216.16	ENST00000337488.11:ENST00000358575.9:ENST00000507922.5:ENST00000306932.10:ENST00000505125.5:ENST00000513975.5:ENST00000514543.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	56	2	3.41554	4.187625000000001	4.95971	0.00663522	0.00153152	0.0703181	0.0361484
chr1	12417825	12417925	30187	0	+	0.33	(0.32,0.35]	chr1	3762	6	INTRON	INTRON	VPS13D	ENSG00000048707.15	ENST00000620676.6:ENST00000613099.4:ENST00000011700.10:ENST00000646411.1:ENST00000543710.5:ENST00000645371.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	128	2	3.99661	4.187545	4.37848	1.98065e-4	1.25403e-5	0.0129156	0.00264407
chr1	88861584	88861684	499213	0	-	0.52	(0.515,0.57]	chr1	59238	9	INTRON	INTRON	GTF2B	ENSG00000137947.12	ENST00000370500.10:ENST00000448623.5:ENST00000494819.5:ENST00000418217.1:ENST00000486078.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	23	2	4.08538	4.187295	4.28921	0.0253843	0.00990051	0.12011	0.0877296
chr1	153766773	153766873	227288	0	+	0.53	(0.515,0.57]	chr1	26115	4	EXON_MRNA	EXON_MRNA:INTRON	INTS3	ENSG00000143624.14	ENST00000318967.7:ENST00000435409.6:ENST00000481797.5:ENST00000512605.4:ENST00000476843.5:ENST00000503133.5:ENST00000368670.5:ENST00000368669.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	23	2	4.08538	4.187295	4.28921	0.0253843	0.00990051	0.12011	0.0877296
chr11	68797630	68797729	4974240	0	-	0.525253	(0.515,0.57]	chr11	469721	3	INTRON	INTRON	CPT1A	ENSG00000110090.13	ENST00000540367.5:ENST00000376618.6:ENST00000265641.10:ENST00000539743.5:ENST00000538994.1	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	4.08538	4.187295	4.28921	0.0253843	0.00990051	0.12011	0.0877296
chr12	53534201	53534301	5328087	0	-	0.52	(0.515,0.57]	chr12	508370	3	SS5_PROX	SS5_PROX:INTRON	ATF7	ENSG00000170653.19	ENST00000548446.6:ENST00000420353.7:ENST00000456903.8	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	4.08538	4.187295	4.28921	0.0253843	0.00990051	0.12011	0.0877296
chr12	121462981	121463081	5438024	0	-	0.52	(0.515,0.57]	chr12	519990	93	INTRON	INTRON	KDM2B	ENSG00000089094.20	ENST00000377071.9:ENST00000377069.8:ENST00000611216.4:ENST00000538503.5:ENST00000542973.5:ENST00000543025.5:ENST00000538243.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	23	2	4.08538	4.187295	4.28921	0.0253843	0.00990051	0.12011	0.0877296
chr12	132146139	132146239	5250699	0	+	0.54	(0.515,0.57]	chr12	499373	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NOC4L	ENSG00000184967.7	ENST00000330579.6:ENST00000541954.1	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	4.08538	4.187295	4.28921	0.0253843	0.00990051	0.12011	0.0877296
chr16	29580709	29580809	6471407	0	-	0.54	(0.515,0.57]	chr16	625297	110	INTRON	INTRON	ENSG00000288632:SMG1P2	ENSG00000288632.1:ENSG00000205534.6	ENST00000675579.1:ENST00000566127.1	lncRNA	lncRNA	lncRNA:transcribed_unprocessed_pseudogene	lncRNA:transcribed_unprocessed_pseudogene	0	23	2	4.08538	4.187295	4.28921	0.0253843	0.00990051	0.12011	0.0877296
chr16	87864330	87864429	6539046	0	-	0.565657	(0.515,0.57]	chr16	633647	8	INTRON	INTRON	SLC7A5	ENSG00000103257.9	ENST00000261622.5	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	4.08538	4.187295	4.28921	0.0253843	0.00990051	0.12011	0.0877296
chr17	29421685	29421785	6585949	0	+	0.52	(0.515,0.57]	chr17	640377	177	INTRON	INTRON	TAOK1	ENSG00000160551.12	ENST00000261716.8:ENST00000583121.5:ENST00000587277.1:ENST00000536202.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	23	2	4.08538	4.187295	4.28921	0.0253843	0.00990051	0.12011	0.0877296
chr22	36313275	36313367	7584696	0	-	0.554348	(0.515,0.57]	chr22	776153	7	INTRON	INTRON	MYH9	ENSG00000100345.23	ENST00000216181.11:ENST00000685801.1:ENST00000691109.1:ENST00000692930.1:ENST00000685187.1:ENST00000691687.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	23	2	4.08538	4.187295	4.28921	0.0253843	0.00990051	0.12011	0.0877296
chr4	139396216	139396316	2050666	0	+	0.56	(0.515,0.57]	chr4	203414	21	INTRON	INTRON	NAA15	ENSG00000164134.13	ENST00000515576.1	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	4.08538	4.187295	4.28921	0.0253843	0.00990051	0.12011	0.0877296
chr7	74693000	74693099	3335603	0	+	0.535354	(0.515,0.57]	chr7	310357	15	INTRON	INTRON	GTF2I	ENSG00000263001.8	ENST00000650807.1:ENST00000690345.1:ENST00000573035.6:ENST00000614986.4:ENST00000620879.4:ENST00000621734.4:ENST00000443166.5:ENST00000432143.2	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	4.08538	4.187295	4.28921	0.0253843	0.00990051	0.12011	0.0877296
chr1	50801330	50801430	450665	0	-	0.26	[0,0.28]	chr1	54256	3	SS5_PROX	SS5_PROX:INTRON	FAF1	ENSG00000185104.21	ENST00000396153.7:ENST00000487898.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	27	2	4.07901	4.1871849999999995	4.29536	0.0590175	0.0494049	0.174117	0.167915
chr1	174435582	174435681	259886	0	+	0.232323	[0,0.28]	chr1	30818	411	INTRON	INTRON	RABGAP1L	ENSG00000152061.24	ENST00000357444.10:ENST00000251507.8:ENST00000681986.1:ENST00000367690.5:ENST00000526253.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	27	2	4.07901	4.1871849999999995	4.29536	0.0590175	0.0494049	0.174117	0.167915
chr1	180732283	180732383	270599	0	+	0.26	[0,0.28]	chr1	31620	495	INTRON	INTRON	XPR1	ENSG00000143324.14	ENST00000367590.9:ENST00000367589.3	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.07901	4.1871849999999995	4.29536	0.0590175	0.0494049	0.174117	0.167915
chr1	224931730	224931830	322372	0	+	0.26	[0,0.28]	chr1	37105	15	INTRON	INTRON	DNAH14	ENSG00000185842.16	ENST00000445597.6:ENST00000430092.5:ENST00000366850.7:ENST00000400952.7:ENST00000682510.1:ENST00000366849.5:ENST00000498360.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	27	2	4.07901	4.1871849999999995	4.29536	0.0590175	0.0494049	0.174117	0.167915
chr12	53030357	53030456	5141668	0	+	0.222222	[0,0.28]	chr12	485029	18	INTRON	INTRON	EIF4B	ENSG00000063046.18	ENST00000262056.14:ENST00000420463.7:ENST00000416762.7:ENST00000550704.5:ENST00000549481.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	27	2	4.07901	4.1871849999999995	4.29536	0.0590175	0.0494049	0.174117	0.167915
chr14	100006202	100006302	5813375	0	+	0.28	[0,0.28]	chr14	551194	338	INTRON	INTRON	EVL	ENSG00000196405.13	ENST00000402714.6	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.07901	4.1871849999999995	4.29536	0.0590175	0.0494049	0.174117	0.167915
chr15	84526380	84526480	6250921	0	-	0.25	[0,0.28]	chr15	596542	2	SS5_PROX	SS5_PROX:INTRON	ENSG00000259244	ENSG00000259244.1	ENST00000560239.1	lncRNA	lncRNA	lncRNA	lncRNA	0	27	2	4.07901	4.1871849999999995	4.29536	0.0590175	0.0494049	0.174117	0.167915
chr16	16644654	16644753	6312311	0	+	0.222222	[0,0.28]	chr16	604106	108	INTRON	INTRON	ENSG00000260126	ENSG00000260126.2	ENST00000567465.2	lncRNA	lncRNA	lncRNA	lncRNA	0	27	2	4.07901	4.1871849999999995	4.29536	0.0590175	0.0494049	0.174117	0.167915
chr17	37282866	37282966	6761797	0	-	0.28	[0,0.28]	chr17	664919	2	SS5_PROX	SS5_PROX:INTRON	ACACA	ENSG00000278540.5	ENST00000616317.5:ENST00000614428.4:ENST00000612895.4:ENST00000617649.4:ENST00000613146.4:ENST00000615229.4:ENST00000621960.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	27	2	4.07901	4.1871849999999995	4.29536	0.0590175	0.0494049	0.174117	0.167915
chr17	56847159	56847259	6631776	0	+	0.28	[0,0.28]	chr17	647732	4	SS3_PROX	SS3_PROX:INTRON	DGKE	ENSG00000153933.10	ENST00000576869.5:ENST00000284061.8:ENST00000572944.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	27	2	4.07901	4.1871849999999995	4.29536	0.0590175	0.0494049	0.174117	0.167915
chr2	169944509	169944607	909332	0	+	0.255102	[0,0.28]	chr2	100326	15	INTRON	INTRON	UBR3	ENSG00000144357.18	ENST00000272793.11:ENST00000430321.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	27	2	4.07901	4.1871849999999995	4.29536	0.0590175	0.0494049	0.174117	0.167915
chr20	3980092	3980192	7309053	0	-	0.23	[0,0.28]	chr20	744300	53	INTRON	INTRON	RNF24	ENSG00000101236.17	ENST00000336095.10:ENST00000358395.11:ENST00000545616.2	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.07901	4.1871849999999995	4.29536	0.0590175	0.0494049	0.174117	0.167915
chr3	17487285	17487384	1627861	0	-	0.262626	[0,0.28]	chr3	168186	584	INTRON	INTRON	TBC1D5	ENSG00000131374.15	ENST00000253692.11:ENST00000696125.1:ENST00000414318.2:ENST00000429383.8:ENST00000446818.6:ENST00000415814.6:ENST00000452492.6:ENST00000412981.5:ENST00000428355.5:ENST00000425944.5:ENST00000430169.5:ENST00000445294.5:ENST00000414349.5:ENST00000443499.6:ENST00000444756.5:ENST00000497531.5:ENST00000443386.5:ENST00000507877.5:ENST00000446863.5:ENST00000434420.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	27	2	4.07901	4.1871849999999995	4.29536	0.0590175	0.0494049	0.174117	0.167915
chr5	34955010	34955109	2337625	0	+	0.252525	[0,0.28]	chr5	225796	4	UTR3	UTR3:EXON_MRNA	DNAJC21	ENSG00000168724.17	ENST00000648817.1:ENST00000382021.2:ENST00000642851.1:ENST00000642675.1:ENST00000642285.1:ENST00000646714.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	27	2	4.07901	4.1871849999999995	4.29536	0.0590175	0.0494049	0.174117	0.167915
chr8	30603556	30603656	3931671	0	-	0.28	[0,0.28]	chr8	360124	180	INTRON	INTRON	GTF2E2	ENSG00000197265.9	ENST00000355904.9:ENST00000522833.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	27	2	4.07901	4.1871849999999995	4.29536	0.0590175	0.0494049	0.174117	0.167915
chr8	119818558	119818653	4039923	0	-	0.273684	[0,0.28]	chr8	368399	1	INTRON	INTRON	TAF2	ENSG00000064313.13	ENST00000378164.7:ENST00000685503.1:ENST00000690808.1:ENST00000692707.1:ENST00000685202.1:ENST00000688645.1:ENST00000685684.1:ENST00000689399.1:ENST00000685876.1:ENST00000689341.1:ENST00000691057.1:ENST00000686098.1:ENST00000690922.1:ENST00000685663.1:ENST00000692518.1:ENST00000688037.1:ENST00000691237.1:ENST00000684862.1:ENST00000685755.1:ENST00000691880.1:ENST00000523904.2:ENST00000689919.1:ENST00000685824.1:ENST00000685993.1:ENST00000692829.1:ENST00000692916.1:ENST00000686879.1:ENST00000685235.1:ENST00000690144.1:ENST00000689164.1:ENST00000691847.1:ENST00000688215.1:ENST00000690031.1:ENST00000689867.1:ENST00000689873.1:ENST00000521007.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	27	2	4.07901	4.1871849999999995	4.29536	0.0590175	0.0494049	0.174117	0.167915
chrX	118568859	118568958	7708909	0	+	0.252525	[0,0.28]	chrX	788702	3	INTRON	INTRON	DOCK11	ENSG00000147251.16	ENST00000276202.9:ENST00000276204.10:ENST00000633080.1	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.07901	4.1871849999999995	4.29536	0.0590175	0.0494049	0.174117	0.167915
chr1	203808910	203809010	296813	0	+	0.53	(0.515,0.57]	chr1	34134	55	INTRON	INTRON	ZC3H11A:ZBED6	ENSG00000058673.17:ENSG00000257315.3	ENST00000367210.3:ENST00000453771.5:ENST00000432282.5:ENST00000638800.1:ENST00000367214.5:ENST00000639812.1:ENST00000367212.7:ENST00000332127.8:ENST00000550078.2:ENST00000495527.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	23	2	4.17037	4.1870899999999995	4.20381	0.0189208	0.0139194	0.108861	0.10247
chr10	16770185	16770285	4566977	0	-	0.53	(0.515,0.57]	chr10	421307	53	INTRON	INTRON	RSU1	ENSG00000148484.18	ENST00000345264.10:ENST00000377921.7:ENST00000602389.1:ENST00000464074.6:ENST00000377911.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	23	2	4.17037	4.1870899999999995	4.20381	0.0189208	0.0139194	0.108861	0.10247
chr10	119168943	119169033	4705213	0	-	0.544444	(0.515,0.57]	chr10	434104	4	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PRDX3	ENSG00000165672.7	ENST00000298510.4:ENST00000494433.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	23	2	4.17037	4.1870899999999995	4.20381	0.0189208	0.0139194	0.108861	0.10247
chr12	121341014	121341111	5437070	0	-	0.536082	(0.515,0.57]	chr12	519908	33	INTRON	INTRON	ANAPC5	ENSG00000089053.13	ENST00000261819.8:ENST00000541887.5:ENST00000534976.5:ENST00000441917.6:ENST00000539612.5:ENST00000541652.5:ENST00000544442.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	23	2	4.17037	4.1870899999999995	4.20381	0.0189208	0.0139194	0.108861	0.10247
chr13	110911153	110911211	5650611	0	-	0.517241	(0.515,0.57]	chr13	538393	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ANKRD10	ENSG00000088448.14	ENST00000267339.6:ENST00000310847.8:ENST00000465753.1:ENST00000494859.5:ENST00000460846.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	23	2	4.17037	4.1870899999999995	4.20381	0.0189208	0.0139194	0.108861	0.10247
chr14	102637209	102637309	5822979	0	+	0.53	(0.515,0.57]	chr14	552490	435	INTRON	INTRON	RCOR1	ENSG00000089902.10	ENST00000262241.7	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	4.17037	4.1870899999999995	4.20381	0.0189208	0.0139194	0.108861	0.10247
chr17	1360491	1360591	6699204	0	-	0.53	(0.515,0.57]	chr17	655527	58	INTRON	INTRON	YWHAE	ENSG00000108953.17	ENST00000264335.13:ENST00000466227.6:ENST00000571732.5:ENST00000573026.1:ENST00000496706.1:ENST00000573196.5:ENST00000575977.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	23	2	4.17037	4.1870899999999995	4.20381	0.0189208	0.0139194	0.108861	0.10247
chr19	4698835	4698933	7121293	0	-	0.540816	(0.515,0.57]	chr19	716565	8	INTRON	INTRON	DPP9	ENSG00000142002.18	ENST00000594671.5:ENST00000262960.14:ENST00000597145.5:ENST00000598800.5:ENST00000599163.5:ENST00000597849.5:ENST00000601764.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	23	2	4.17037	4.1870899999999995	4.20381	0.0189208	0.0139194	0.108861	0.10247
chr19	11055419	11055518	7016555	0	+	0.565657	(0.515,0.57]	chr19	697366	73	INTRON	INTRON	SMARCA4	ENSG00000127616.20	ENST00000644737.1:ENST00000642726.1:ENST00000646484.1:ENST00000643549.1:ENST00000643296.1:ENST00000647230.1:ENST00000642628.1:ENST00000646510.1:ENST00000429416.8:ENST00000344626.10:ENST00000646693.2:ENST00000645460.1:ENST00000541122.6:ENST00000589677.5:ENST00000444061.8:ENST00000590574.6:ENST00000643995.1:ENST00000644327.1:ENST00000644065.1:ENST00000644963.1:ENST00000643208.1:ENST00000645061.1:ENST00000642350.1:ENST00000647268.1:ENST00000643857.1:ENST00000646183.1:ENST00000646746.1:ENST00000643534.1:ENST00000646593.1:ENST00000645648.1:ENST00000592604.6:ENST00000591595.5:ENST00000585799.5:ENST00000642508.1:ENST00000645236.1:ENST00000538456.4:ENST00000586985.2:ENST00000592158.2:ENST00000646889.1:ENST00000643929.1:ENST00000645387.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	23	2	4.17037	4.1870899999999995	4.20381	0.0189208	0.0139194	0.108861	0.10247
chr19	45043600	45043699	7078586	0	+	0.535354	(0.515,0.57]	chr19	707948	29	INTRON	INTRON	CLASRP	ENSG00000104859.15	ENST00000221455.8:ENST00000391953.8:ENST00000591410.5:ENST00000592056.5:ENST00000391952.7:ENST00000588936.5:ENST00000544944.6:ENST00000587112.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	23	2	4.17037	4.1870899999999995	4.20381	0.0189208	0.0139194	0.108861	0.10247
chr2	9544654	9544753	1064380	0	-	0.525253	(0.515,0.57]	chr2	113556	5	INTRON	INTRON	ADAM17	ENSG00000151694.14	ENST00000310823.8:ENST00000648548.1:ENST00000649227.1:ENST00000648857.1:ENST00000647979.1:ENST00000647610.1:ENST00000650116.1:ENST00000647622.1:ENST00000649972.1:ENST00000650241.1:ENST00000618923.2:ENST00000478059.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	23	2	4.17037	4.1870899999999995	4.20381	0.0189208	0.0139194	0.108861	0.10247
chr2	108721868	108721968	847433	0	+	0.52	(0.515,0.57]	chr2	94788	18	INTRON	INTRON	RANBP2	ENSG00000153201.16	ENST00000283195.11:ENST00000425282.4:ENST00000629728.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	23	2	4.17037	4.1870899999999995	4.20381	0.0189208	0.0139194	0.108861	0.10247
chr2	165934344	165934443	1253772	0	-	0.545455	(0.515,0.57]	chr2	132918	14	EXON_MRNA	EXON_MRNA:INTRON	TTC21B	ENSG00000123607.16	ENST00000680888.1:ENST00000680947.1:ENST00000681083.1:ENST00000681024.1:ENST00000680690.1:ENST00000679676.1:ENST00000679967.1:ENST00000679356.1:ENST00000680327.1:ENST00000681502.1:ENST00000681483.1:ENST00000680657.1:ENST00000679931.1:ENST00000681952.1:ENST00000652557.1:ENST00000679799.1:ENST00000681819.1:ENST00000243344.8:ENST00000679840.1:ENST00000680448.1:ENST00000681606.1:ENST00000679671.1:ENST00000464374.5:ENST00000680698.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	23	2	4.17037	4.1870899999999995	4.20381	0.0189208	0.0139194	0.108861	0.10247
chr3	136166223	136166323	1823938	0	-	0.53	(0.515,0.57]	chr3	183518	131	INTRON	INTRON	MSL2	ENSG00000174579.4	ENST00000309993.3:ENST00000434835.2:ENST00000481989.1:ENST00000491050.1:ENST00000473093.1	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	4.17037	4.1870899999999995	4.20381	0.0189208	0.0139194	0.108861	0.10247
chr4	2624961	2625061	1913402	0	+	0.54	(0.515,0.57]	chr4	191984	3	SS3_PROX	SS3_PROX:INTRON	RNF4:FAM193A	ENSG00000063978.16:ENSG00000125386.16	ENST00000508235.1:ENST00000637812.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	23	2	4.17037	4.1870899999999995	4.20381	0.0189208	0.0139194	0.108861	0.10247
chr4	107990963	107991063	2017818	0	+	0.57	(0.515,0.57]	chr4	200622	5	INTRON	INTRON	HADH	ENSG00000138796.18	ENST00000603302.5:ENST00000505878.4:ENST00000639335.1:ENST00000639146.1:ENST00000640752.2:ENST00000507260.3:ENST00000640201.2:ENST00000682197.1:ENST00000638621.1:ENST00000511742.1:ENST00000639013.1:ENST00000684696.1:ENST00000309522.8:ENST00000403312.6:ENST00000681992.1:ENST00000640060.1:ENST00000638559.1:ENST00000682373.1:ENST00000640586.1:ENST00000639698.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	23	2	4.17037	4.1870899999999995	4.20381	0.0189208	0.0139194	0.108861	0.10247
chr6	13942424	13942524	2822354	0	+	0.53	(0.515,0.57]	chr6	265130	167	INTRON	INTRON	RNF182	ENSG00000180537.13	ENST00000537663.5:ENST00000488763.5:ENST00000544682.5:ENST00000420478.2:ENST00000488300.6:ENST00000471906.1:ENST00000537388.1:ENST00000423553.6	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	4.17037	4.1870899999999995	4.20381	0.0189208	0.0139194	0.108861	0.10247
chr6	35667736	35667836	3087308	0	-	0.52	(0.515,0.57]	chr6	288789	245	INTRON	INTRON	FKBP5	ENSG00000096060.15	ENST00000536438.5:ENST00000539068.5:ENST00000357266.9:ENST00000542713.1	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	4.17037	4.1870899999999995	4.20381	0.0189208	0.0139194	0.108861	0.10247
chr6	70569451	70569551	2895535	0	+	0.54	(0.515,0.57]	chr6	274071	19	INTRON	INTRON	SDHAF4	ENSG00000154079.6	ENST00000370474.4	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	4.17037	4.1870899999999995	4.20381	0.0189208	0.0139194	0.108861	0.10247
chr7	6384012	6384112	3273115	0	+	0.53	(0.515,0.57]	chr7	304311	77	INTRON	INTRON	RAC1	ENSG00000136238.19	ENST00000348035.9:ENST00000356142.4:ENST00000696666.1:ENST00000488373.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	23	2	4.17037	4.1870899999999995	4.20381	0.0189208	0.0139194	0.108861	0.10247
chr1	93333398	93333497	509288	0	-	0.454545	(0.44,0.476]	chr1	60007	1	INTRON	INTRON	CCDC18-AS1	ENSG00000223745.8	ENST00000413606.5:ENST00000457025.5:ENST00000451302.6:ENST00000668257.1:ENST00000455474.5:ENST00000447577.5:ENST00000429859.5:ENST00000661111.1:ENST00000450843.5:ENST00000440778.5:ENST00000659026.1:ENST00000669506.1:ENST00000657560.1:ENST00000421202.6:ENST00000436200.2:ENST00000670231.1:ENST00000432741.5:ENST00000411670.5:ENST00000452347.6	lncRNA	lncRNA	lncRNA	lncRNA	2	69	2	2.49823	4.18693	5.87563	0.00718224	8.84961e-5	0.0756118	0.00842626
chr10	130168544	130168641	4536657	0	+	0.587629	(0.57,1]	chr10	418810	12	INTRON	INTRON	GLRX3	ENSG00000108010.12	ENST00000331244.10:ENST00000481034.1:ENST00000368644.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	34	2	3.48337	4.186675	4.88998	6.20854e-4	4.016e-4	0.0223951	0.0185763
chr2	61226170	61226269	1128031	0	-	0.323232	(0.32,0.35]	chr2	121180	25	INTRON	INTRON	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000411912.5:ENST00000463046.5:ENST00000472706.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	74	2	2.67068	4.18654	5.7024	0.00406276	5.25722e-4	0.0578984	0.0210958
chr1	100978957	100979057	175176	0	+	0.38	(0.378,0.408]	chr1	18985	42	UTR3	UTR3:EXON_MRNA	SLC30A7	ENSG00000162695.12	ENST00000370112.8:ENST00000357650.9	protein_coding	protein_coding	protein_coding	protein_coding	2	78	2	2.98311	4.186294999999999	5.38948	0.0013103	2.85992e-4	0.0331539	0.0150568
chr3	88106335	88106435	1457499	0	+	0.5	(0.476,0.515]	chr3	153170	196	INTRON	INTRON	ZNF654	ENSG00000175105.8	ENST00000636215.2:ENST00000473136.4:ENST00000623596.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	51	2	3.40003	4.18628	4.97253	0.00311573	0.00139193	0.0498063	0.0341261
chr5	139172558	139172657	2735202	0	-	0.50505	(0.476,0.515]	chr5	257600	172	INTRON	INTRON	SIL1	ENSG00000120725.13	ENST00000394817.7:ENST00000265195.9:ENST00000509534.5:ENST00000508639.5:ENST00000507002.5:ENST00000505830.5:ENST00000504666.5:ENST00000509400.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	51	2	3.40003	4.18628	4.97253	0.00311573	0.00139193	0.0498063	0.0341261
chr14	30572934	30573034	5674523	0	+	0.26	[0,0.28]	chr14	540499	117	INTRON	INTRON	G2E3	ENSG00000092140.16	ENST00000206595.11:ENST00000438909.6:ENST00000544007.5:ENST00000550944.5:ENST00000552488.1:ENST00000648008.1:ENST00000553504.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	63	2	3.2621000000000002	4.186215000000001	5.11033	0.00991388	0.00367113	0.0838372	0.056059199999999997
chr9	121188688	121188786	4336278	0	-	0.387755	(0.378,0.408]	chr9	398444	13	INTRON	INTRON	RAB14	ENSG00000119396.11	ENST00000373840.9:ENST00000451303.1	protein_coding	protein_coding	protein_coding	protein_coding	1	57	2	2.66785	4.18618	5.70451	0.0224639	6.32265e-5	0.11692	0.00658818
chr1	35414283	35414383	69783	0	+	0.3	(0.28,0.32]	chr1	8867	2	SS5_PROX	SS5_PROX:INTRON	ZMYM4	ENSG00000146463.12	ENST00000314607.11:ENST00000457946.1	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.03345	4.18604	4.33863	0.0704058	0.0207276	0.184298	0.122348
chr1	91020247	91020347	502510	0	-	0.31	(0.28,0.32]	chr1	59504	375	INTRON	INTRON	ZNF644	ENSG00000122482.22	ENST00000370440.5:ENST00000337393.10:ENST00000347275.9:ENST00000361321.5:ENST00000467231.5:ENST00000498303.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	26	2	4.03345	4.18604	4.33863	0.0704058	0.0207276	0.184298	0.122348
chr1	93108532	93108632	162832	0	+	0.3	(0.28,0.32]	chr1	17567	272	INTRON	INTRON	MTF2	ENSG00000143033.18	ENST00000540243.5:ENST00000545708.5:ENST00000474314.6:ENST00000370298.9:ENST00000473430.5:ENST00000494963.5:ENST00000471953.5:ENST00000370303.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	26	2	4.03345	4.18604	4.33863	0.0704058	0.0207276	0.184298	0.122348
chr1	113810510	113810610	525929	0	-	0.29	(0.28,0.32]	chr1	61864	121	INTRON	INTRON	RSBN1	ENSG00000081019.14	ENST00000261441.9:ENST00000612242.4:ENST00000476412.5:ENST00000615321.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	26	2	4.03345	4.18604	4.33863	0.0704058	0.0207276	0.184298	0.122348
chr1	244701672	244701772	348199	0	+	0.31	(0.28,0.32]	chr1	40375	93	INTRON	INTRON	DESI2	ENSG00000121644.19	ENST00000263831.11:ENST00000302550.16	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.03345	4.18604	4.33863	0.0704058	0.0207276	0.184298	0.122348
chr10	12026249	12026349	4557615	0	-	0.31	(0.28,0.32]	chr10	420618	117	INTRON	INTRON	UPF2	ENSG00000151461.20	ENST00000357604.10:ENST00000356352.6:ENST00000397053.6	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.03345	4.18604	4.33863	0.0704058	0.0207276	0.184298	0.122348
chr10	63621463	63621562	4437213	0	+	0.282828	(0.28,0.32]	chr10	409280	7	UTR3	UTR3:EXON_MRNA	REEP3	ENSG00000165476.14	ENST00000373758.5	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.03345	4.18604	4.33863	0.0704058	0.0207276	0.184298	0.122348
chr11	14307208	14307307	4917151	0	-	0.30303	(0.28,0.32]	chr11	460793	110	INTRON	INTRON	RRAS2	ENSG00000133818.14	ENST00000256196.9:ENST00000537760.5:ENST00000529237.5:ENST00000534746.5:ENST00000526063.5:ENST00000532814.5:ENST00000531807.5:ENST00000532950.5:ENST00000531421.5:ENST00000526717.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	26	2	4.03345	4.18604	4.33863	0.0704058	0.0207276	0.184298	0.122348
chr11	28144704	28144803	4752523	0	+	0.282828	(0.28,0.32]	chr11	440097	97	INTRON	INTRON	METTL15	ENSG00000169519.21	ENST00000406787.7:ENST00000451385.6:ENST00000407364.8:ENST00000532947.2:ENST00000634627.1:ENST00000634973.1:ENST00000303459.10:ENST00000634721.1:ENST00000634762.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	26	2	4.03345	4.18604	4.33863	0.0704058	0.0207276	0.184298	0.122348
chr12	52935842	52935942	5326997	0	-	0.3	(0.28,0.32]	chr12	508075	95	INTRON	INTRON	KRT8	ENSG00000170421.13	ENST00000552551.5:ENST00000546897.5:ENST00000546826.5:ENST00000548998.5	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.03345	4.18604	4.33863	0.0704058	0.0207276	0.184298	0.122348
chr12	91590034	91590134	5385117	0	-	0.29	(0.28,0.32]	chr12	513485	828	INTRON	INTRON	ENSG00000289605	ENSG00000289605.1	ENST00000685093.1	lncRNA	lncRNA	lncRNA	lncRNA	0	26	2	4.03345	4.18604	4.33863	0.0704058	0.0207276	0.184298	0.122348
chr12	102129538	102129638	5204953	0	+	0.3	(0.28,0.32]	chr12	492808	51	INTRON	INTRON	PARPBP	ENSG00000185480.12	ENST00000327680.7:ENST00000541394.5:ENST00000543784.5:ENST00000392909.7:ENST00000537257.5:ENST00000392911.6:ENST00000541668.5:ENST00000392914.3:ENST00000457614.6:ENST00000417507.6:ENST00000412715.3:ENST00000535811.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	26	2	4.03345	4.18604	4.33863	0.0704058	0.0207276	0.184298	0.122348
chr15	83036227	83036327	6249127	0	-	0.3	(0.28,0.32]	chr15	596398	55	INTRON	INTRON	BTBD1	ENSG00000064726.10	ENST00000261721.9:ENST00000379403.2:ENST00000559652.5:ENST00000560015.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	26	2	4.03345	4.18604	4.33863	0.0704058	0.0207276	0.184298	0.122348
chr16	81320865	81320965	6404279	0	+	0.29	(0.28,0.32]	chr16	614961	52	INTRON	INTRON	GAN	ENSG00000261609.8	ENST00000648349.2:ENST00000648994.2:ENST00000674788.1:ENST00000650388.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	26	2	4.03345	4.18604	4.33863	0.0704058	0.0207276	0.184298	0.122348
chr16	89754308	89754407	6544155	0	-	0.30303	(0.28,0.32]	chr16	634440	17	INTRON	INTRON	FANCA	ENSG00000187741.16	ENST00000561667.2:ENST00000389301.8:ENST00000568369.6:ENST00000564475.6:ENST00000696275.1:ENST00000696287.1:ENST00000696286.1:ENST00000696274.1:ENST00000567510.2:ENST00000696291.1:ENST00000305699.15:ENST00000567988.5:ENST00000561660.1:ENST00000563510.5:ENST00000563318.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	26	2	4.03345	4.18604	4.33863	0.0704058	0.0207276	0.184298	0.122348
chr17	4363263	4363363	6712332	0	-	0.3	(0.28,0.32]	chr17	657734	176	INTRON	INTRON	UBE2G1	ENSG00000132388.13	ENST00000396981.7:ENST00000572484.5:ENST00000574633.5:ENST00000571980.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	26	2	4.03345	4.18604	4.33863	0.0704058	0.0207276	0.184298	0.122348
chr17	39423821	39423921	6766871	0	-	0.32	(0.28,0.32]	chr17	665539	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	MED1	ENSG00000125686.12	ENST00000394287.7:ENST00000300651.11:ENST00000577831.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	26	2	4.03345	4.18604	4.33863	0.0704058	0.0207276	0.184298	0.122348
chr19	5654856	5654956	7005630	0	+	0.32	(0.28,0.32]	chr19	695011	4	SS5_PROX	SS5_PROX:INTRON	SAFB	ENSG00000160633.13	ENST00000589863.5:ENST00000588852.2:ENST00000292123.9:ENST00000592224.5:ENST00000454510.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	26	2	4.03345	4.18604	4.33863	0.0704058	0.0207276	0.184298	0.122348
chr2	61358464	61358564	1129420	0	-	0.32	(0.28,0.32]	chr2	121448	74	INTRON	INTRON	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000453133.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	26	2	4.03345	4.18604	4.33863	0.0704058	0.0207276	0.184298	0.122348
chr2	97588828	97588926	1184243	0	-	0.295918	(0.28,0.32]	chr2	127059	31	INTRON	INTRON	ANKRD36B	ENSG00000196912.13	ENST00000359901.9:ENST00000258459.12:ENST00000443455.5:ENST00000419390.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	26	2	4.03345	4.18604	4.33863	0.0704058	0.0207276	0.184298	0.122348
chr2	239992971	239993070	1345398	0	-	0.313131	(0.28,0.32]	chr2	141068	29	EXON_MRNA	EXON_MRNA:INTRON	NDUFA10	ENSG00000130414.13	ENST00000419408.5:ENST00000679183.1:ENST00000677057.1:ENST00000676782.1:ENST00000677407.1:ENST00000676929.1:ENST00000678455.1:ENST00000252711.7:ENST00000677692.1:ENST00000476216.6:ENST00000677395.1:ENST00000678188.1:ENST00000677979.1:ENST00000678914.1:ENST00000678562.1:ENST00000678832.1:ENST00000677155.1:ENST00000677764.1:ENST00000677294.1:ENST00000678468.1:ENST00000677324.1:ENST00000678158.1:ENST00000676491.1:ENST00000677114.1:ENST00000404554.5:ENST00000620965.5:ENST00000485344.6:ENST00000679308.1:ENST00000677567.1:ENST00000679158.1:ENST00000443626.5:ENST00000444548.6:ENST00000448880.6:ENST00000677490.1:ENST00000307300.8:ENST00000678898.1:ENST00000677368.1:ENST00000677263.1:ENST00000678289.1:ENST00000676784.1:ENST00000414580.2:ENST00000679332.1:ENST00000678737.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	26	2	4.03345	4.18604	4.33863	0.0704058	0.0207276	0.184298	0.122348
chr20	3345628	3345728	7307697	0	-	0.32	(0.28,0.32]	chr20	744173	15	INTRON	INTRON	DNAAF9	ENSG00000088854.13	ENST00000252032.10	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.03345	4.18604	4.33863	0.0704058	0.0207276	0.184298	0.122348
chr21	46189118	46189217	7470458	0	-	0.313131	(0.28,0.32]	chr21	761438	4	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	LSS	ENSG00000160285.15	ENST00000356396.8:ENST00000397728.8:ENST00000491729.1:ENST00000419093.5:ENST00000457828.6:ENST00000474319.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	26	2	4.03345	4.18604	4.33863	0.0704058	0.0207276	0.184298	0.122348
chr3	130987750	130987849	1503878	0	+	0.30303	(0.28,0.32]	chr3	157315	67	INTRON	INTRON	ATP2C1	ENSG00000017260.20	ENST00000504381.5:ENST00000505330.5:ENST00000507488.6:ENST00000508532.5:ENST00000533801.6:ENST00000510168.6:ENST00000513801.5:ENST00000504948.5:ENST00000328560.12:ENST00000428331.6:ENST00000422190.6:ENST00000359644.7:ENST00000504612.5:ENST00000514654.5:ENST00000504571.5:ENST00000508660.5:ENST00000510774.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	26	2	4.03345	4.18604	4.33863	0.0704058	0.0207276	0.184298	0.122348
chr4	94248180	94248280	1997921	0	+	0.3	(0.28,0.32]	chr4	199424	3	SS3_PROX	SS3_PROX:INTRON	SMARCAD1	ENSG00000163104.18	ENST00000359052.8:ENST00000457823.6:ENST00000354268.9:ENST00000510105.5:ENST00000394961.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	26	2	4.03345	4.18604	4.33863	0.0704058	0.0207276	0.184298	0.122348
chr6	42572042	42572141	2865137	0	+	0.313131	(0.28,0.32]	chr6	271014	73	INTRON	INTRON	UBR2	ENSG00000024048.11	ENST00000372899.6:ENST00000372901.2:ENST00000372903.6	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.03345	4.18604	4.33863	0.0704058	0.0207276	0.184298	0.122348
chr6	78937206	78937306	3140624	0	-	0.29	(0.28,0.32]	chr6	292699	29	UTR3	UTR3:EXON_MRNA	PHIP	ENSG00000146247.14	ENST00000275034.5	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.03345	4.18604	4.33863	0.0704058	0.0207276	0.184298	0.122348
chr7	65051332	65051432	3321505	0	+	0.32	(0.28,0.32]	chr7	308810	124	INTRON	INTRON	CCT6P3	ENSG00000234585.6	ENST00000419314.5:ENST00000426828.5	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript	0	26	2	4.03345	4.18604	4.33863	0.0704058	0.0207276	0.184298	0.122348
chr8	31169417	31169516	3729327	0	+	0.313131	(0.28,0.32]	chr8	346714	18	INTRON	INTRON	WRN	ENSG00000165392.11	ENST00000650667.1:ENST00000298139.7:ENST00000521620.5:ENST00000651946.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	26	2	4.03345	4.18604	4.33863	0.0704058	0.0207276	0.184298	0.122348
chrX	147939415	147939509	7729507	0	+	0.308511	(0.28,0.32]	chrX	790959	9	INTRON	INTRON	FMR1	ENSG00000102081.16	ENST00000370475.9:ENST00000440235.6:ENST00000218200.12:ENST00000370471.7:ENST00000370477.5:ENST00000439526.6:ENST00000687593.1:ENST00000691214.1:ENST00000692108.1:ENST00000691111.1:ENST00000685491.1:ENST00000691793.1:ENST00000492846.2:ENST00000689570.1:ENST00000495717.6:ENST00000616382.5:ENST00000621453.5:ENST00000693452.1:ENST00000690137.1:ENST00000689517.1:ENST00000690216.1:ENST00000693512.1:ENST00000686086.1:ENST00000692091.1:ENST00000475038.3:ENST00000621987.5:ENST00000370470.5:ENST00000693079.1:ENST00000620828.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	26	2	4.03345	4.18604	4.33863	0.0704058	0.0207276	0.184298	0.122348
chr3	155853724	155853810	1844343	0	-	0.523256	(0.515,0.57]	chr3	185568	6	CDS	CDS:EXON_MRNA	SLC33A1	ENSG00000169359.16	ENST00000643144.2:ENST00000359479.7:ENST00000468581.2:ENST00000646424.1:ENST00000644094.1:ENST00000642438.1:ENST00000644855.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	75	2	2.89379	4.1858900000000006	5.47799	2.98479e-4	2.09356e-4	0.0154922	0.0131276
chr1	6022822	6022922	4304	0	+	0.37	(0.35,0.378]	chr1	821	36	INTRON	INTRON	KCNAB2	ENSG00000069424.16	ENST00000655548.1:ENST00000378111.6:ENST00000378097.6:ENST00000666163.1:ENST00000671676.1:ENST00000658883.1:ENST00000658691.1:ENST00000435937.6:ENST00000445501.6:ENST00000478098.5:ENST00000653262.1:ENST00000668706.1:ENST00000389632.9:ENST00000654144.1:ENST00000341524.6:ENST00000462676.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	25	2	3.97032	4.1858	4.40128	0.0578667	0.0120289	0.167723	0.0962115
chr1	6552011	6552111	368099	0	-	0.36	(0.35,0.378]	chr1	43237	10	INTRON	INTRON	NOL9	ENSG00000162408.11	ENST00000377705.6:ENST00000464665.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	25	2	3.97032	4.1858	4.40128	0.0578667	0.0120289	0.167723	0.0962115
chr10	84427882	84427981	4478479	0	+	0.373737	(0.35,0.378]	chr10	412234	16	INTRON	INTRON	CCSER2	ENSG00000107771.17	ENST00000372088.8:ENST00000224756.12:ENST00000494144.5:ENST00000543283.2:ENST00000494586.5:ENST00000493409.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	25	2	3.97032	4.1858	4.40128	0.0578667	0.0120289	0.167723	0.0962115
chr11	108584520	108584620	5036270	0	-	0.37	(0.35,0.378]	chr11	474574	165	INTRON	INTRON	EXPH5	ENSG00000110723.12	ENST00000265843.9:ENST00000525344.5	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	3.97032	4.1858	4.40128	0.0578667	0.0120289	0.167723	0.0962115
chr11	119124236	119124335	4874738	0	+	0.363636	(0.35,0.378]	chr11	455633	1	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	HINFP	ENSG00000172273.13	ENST00000350777.7:ENST00000527206.1:ENST00000529354.1:ENST00000531360.5:ENST00000529988.5:ENST00000527354.5:ENST00000527410.3:ENST00000530678.1:ENST00000532312.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	25	2	3.97032	4.1858	4.40128	0.0578667	0.0120289	0.167723	0.0962115
chr15	29083383	29083483	5991859	0	+	0.36	(0.35,0.378]	chr15	569622	69	INTRON	INTRON	APBA2	ENSG00000034053.15	ENST00000561069.5:ENST00000558402.5:ENST00000683413.1:ENST00000558330.5:ENST00000559814.5:ENST00000411764.5:ENST00000558259.5:ENST00000382938.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	25	2	3.97032	4.1858	4.40128	0.0578667	0.0120289	0.167723	0.0962115
chr17	4865024	4865124	6549830	0	+	0.36	(0.35,0.378]	chr17	635584	53	INTRON	INTRON	MINK1	ENSG00000141503.17	ENST00000355280.11:ENST00000572330.5:ENST00000347992.11:ENST00000574453.5:ENST00000453408.7:ENST00000664602.1:ENST00000577021.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	25	2	3.97032	4.1858	4.40128	0.0578667	0.0120289	0.167723	0.0962115
chr2	131225531	131225630	865620	0	+	0.353535	(0.35,0.378]	chr2	97204	11	INTRON	INTRON	PLEKHB2:POTEE	ENSG00000115762.17:ENSG00000188219.16	ENST00000404460.5:ENST00000683005.1:ENST00000356920.9:ENST00000358087.9:ENST00000514256.5:ENST00000626191.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	25	2	3.97032	4.1858	4.40128	0.0578667	0.0120289	0.167723	0.0962115
chr2	131682999	131683099	867823	0	+	0.36	(0.35,0.378]	chr2	97479	4	SS5_PROX	SS5_PROX:INTRON	C2orf27A	ENSG00000287151.1	ENST00000652878.1:ENST00000657415.1:ENST00000666411.1:ENST00000653458.1	lncRNA	lncRNA	lncRNA	lncRNA	0	25	2	3.97032	4.1858	4.40128	0.0578667	0.0120289	0.167723	0.0962115
chr2	174206375	174206475	1270431	0	-	0.37	(0.35,0.378]	chr2	134282	640	INTRON	INTRON	OLA1	ENSG00000138430.16	ENST00000284719.8:ENST00000344357.9:ENST00000428402.6:ENST00000409546.5:ENST00000429575.1	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	3.97032	4.1858	4.40128	0.0578667	0.0120289	0.167723	0.0962115
chr2	208723272	208723372	996630	0	+	0.36	(0.35,0.378]	chr2	106920	659	INTRON	INTRON	PTH2R	ENSG00000144407.10	ENST00000419079.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	0	25	2	3.97032	4.1858	4.40128	0.0578667	0.0120289	0.167723	0.0962115
chr5	77694145	77694245	2646407	0	-	0.36	(0.35,0.378]	chr5	251558	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	TBCA	ENSG00000171530.15	ENST00000380377.9:ENST00000306388.10:ENST00000517679.5:ENST00000518218.5:ENST00000520361.5:ENST00000651106.1:ENST00000517881.1:ENST00000518338.6:ENST00000522370.1:ENST00000520039.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	25	2	3.97032	4.1858	4.40128	0.0578667	0.0120289	0.167723	0.0962115
chrX	124082127	124082226	7717992	0	+	0.353535	(0.35,0.378]	chrX	789626	2	INTRON	INTRON	STAG2	ENSG00000101972.20	ENST00000218089.13:ENST00000687071.1:ENST00000469481.1:ENST00000371160.5:ENST00000687852.1:ENST00000371145.8:ENST00000692982.1:ENST00000371157.7:ENST00000691035.1:ENST00000686802.1:ENST00000686127.1:ENST00000371144.7:ENST00000693144.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	25	2	3.97032	4.1858	4.40128	0.0578667	0.0120289	0.167723	0.0962115
chr11	33745226	33745324	4941384	0	-	0.265306	[0,0.28]	chr11	462952	33	UTR3	UTR3:EXON_MRNA:INTRON	FBXO3	ENSG00000110429.14	ENST00000526785.5:ENST00000265651.8:ENST00000530013.5:ENST00000530401.5:ENST00000531080.5:ENST00000532057.5:ENST00000534136.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	69	2	2.68918	4.185765	5.68235	0.0275571	4.43841e-4	0.123904	0.0190552
chr17	13006357	13006451	6726368	0	-	0.244681	[0,0.28]	chr17	660085	5	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	ELAC2	ENSG00000006744.19	ENST00000338034.9:ENST00000484122.5:ENST00000480891.5:ENST00000395962.6:ENST00000426905.7:ENST00000584650.5:ENST00000446899.5:ENST00000609345.1:ENST00000609101.5:ENST00000580504.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	69	2	2.68918	4.185765	5.68235	0.0275571	4.43841e-4	0.123904	0.0190552
chr1	77643152	77643252	493068	0	-	0.29	(0.28,0.32]	chr1	58315	11	INTRON	INTRON	ZZZ3	ENSG00000036549.13	ENST00000370801.8:ENST00000370798.5:ENST00000433749.5:ENST00000414381.5:ENST00000463166.5:ENST00000469944.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	26	2	4.12807	4.1856349999999996	4.2432	0.0479043	0.0338135	0.153019	0.146709
chr1	108294924	108295023	176584	0	+	0.313131	(0.28,0.32]	chr1	19153	102	INTRON	INTRON	SLC25A24P1	ENSG00000241361.8	ENST00000411846.6:ENST00000434803.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	26	2	4.12807	4.1856349999999996	4.2432	0.0479043	0.0338135	0.153019	0.146709
chr10	68969221	68969321	4443624	0	+	0.31	(0.28,0.32]	chr10	409862	1	SS5_PROX	SS5_PROX:INTRON	DDX21	ENSG00000165732.14	ENST00000685106.1:ENST00000687162.1:ENST00000684824.1:ENST00000354185.9:ENST00000686528.1:ENST00000690650.1:ENST00000690316.1:ENST00000620315.2:ENST00000685513.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	26	2	4.12807	4.1856349999999996	4.2432	0.0479043	0.0338135	0.153019	0.146709
chr10	128120508	128120607	4715644	0	-	0.282828	(0.28,0.32]	chr10	435172	8	INTRON	INTRON	MKI67	ENSG00000148773.14	ENST00000368654.8:ENST00000368653.7:ENST00000478293.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	26	2	4.12807	4.1856349999999996	4.2432	0.0479043	0.0338135	0.153019	0.146709
chr10	131980370	131980469	4715882	0	-	0.30303	(0.28,0.32]	chr10	435218	61	INTRON	INTRON	BNIP3	ENSG00000176171.12	ENST00000368636.9:ENST00000540159.4:ENST00000633835.2:ENST00000631806.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	26	2	4.12807	4.1856349999999996	4.2432	0.0479043	0.0338135	0.153019	0.146709
chr11	46546617	46546697	4946780	0	-	0.3	(0.28,0.32]	chr11	463505	1	SS5_PROX	SS5_PROX:INTRON	AMBRA1	ENSG00000110497.15	ENST00000683756.1:ENST00000534300.5:ENST00000533727.5:ENST00000314845.7:ENST00000458649.6:ENST00000528950.1:ENST00000531542.1:ENST00000524783.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	26	2	4.12807	4.1856349999999996	4.2432	0.0479043	0.0338135	0.153019	0.146709
chr11	46569238	46569337	4947012	0	-	0.282828	(0.28,0.32]	chr11	463525	198	INTRON	INTRON	AMBRA1	ENSG00000110497.15	ENST00000683756.1:ENST00000534300.5:ENST00000533727.5:ENST00000314845.7:ENST00000458649.6:ENST00000528950.1:ENST00000531542.1:ENST00000526606.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	26	2	4.12807	4.1856349999999996	4.2432	0.0479043	0.0338135	0.153019	0.146709
chr11	87077499	87077599	4843208	0	+	0.32	(0.28,0.32]	chr11	451850	55	INTRON	INTRON	TMEM135	ENSG00000166575.17	ENST00000340353.11:ENST00000529023.5:ENST00000526733.5:ENST00000305494.6:ENST00000532959.5:ENST00000525018.5:ENST00000531800.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	26	2	4.12807	4.1856349999999996	4.2432	0.0479043	0.0338135	0.153019	0.146709
chr12	42207869	42207969	5313305	0	-	0.32	(0.28,0.32]	chr12	505324	83	INTRON	INTRON	YAF2	ENSG00000015153.15	ENST00000534854.7:ENST00000327791.8:ENST00000380790.4:ENST00000552109.5:ENST00000547622.5:ENST00000547351.5:ENST00000551268.5:ENST00000551528.5:ENST00000548661.5:ENST00000546726.5:ENST00000547724.1:ENST00000552928.5:ENST00000548917.1:ENST00000547254.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	26	2	4.12807	4.1856349999999996	4.2432	0.0479043	0.0338135	0.153019	0.146709
chr16	18149551	18149651	6454129	0	-	0.29	(0.28,0.32]	chr16	621960	1458	INTRON	INTRON	ENSG00000259929:ENSG00000260242	ENSG00000259929.5:ENSG00000260242.1	ENST00000567304.1:ENST00000563866.1	lncRNA	lncRNA	lncRNA	lncRNA	0	26	2	4.12807	4.1856349999999996	4.2432	0.0479043	0.0338135	0.153019	0.146709
chr16	22311420	22311520	6321677	0	+	0.31	(0.28,0.32]	chr16	605222	12	INTRON	INTRON	POLR3E	ENSG00000058600.16	ENST00000615879.4:ENST00000299853.10:ENST00000564209.5:ENST00000565358.5:ENST00000418581.6:ENST00000359210.8:ENST00000563024.5:ENST00000564061.5:ENST00000564750.5:ENST00000565551.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	26	2	4.12807	4.1856349999999996	4.2432	0.0479043	0.0338135	0.153019	0.146709
chr17	58780442	58780542	6637889	0	+	0.3	(0.28,0.32]	chr17	648237	236	INTRON	INTRON	PPM1E	ENSG00000175175.6	ENST00000308249.4	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.12807	4.1856349999999996	4.2432	0.0479043	0.0338135	0.153019	0.146709
chr18	47145573	47145672	6967169	0	-	0.313131	(0.28,0.32]	chr18	689609	79	INTRON	INTRON	HDHD2:ENSG00000267228	ENSG00000167220.12:ENSG00000267228.7	ENST00000588183.5:ENST00000300605.11:ENST00000602459.6:ENST00000587841.5:ENST00000590815.5:ENST00000591480.5:ENST00000586546.5:ENST00000590481.5:ENST00000588940.5:ENST00000587388.5:ENST00000591268.1:ENST00000592591.1:ENST00000591671.1:ENST00000588705.1:ENST00000602926.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	26	2	4.12807	4.1856349999999996	4.2432	0.0479043	0.0338135	0.153019	0.146709
chr2	156203381	156203481	1248463	0	-	0.31	(0.28,0.32]	chr2	132415	524	INTRON	INTRON	LINC01876	ENSG00000226383.7	ENST00000635799.1:ENST00000662073.1:ENST00000659502.1:ENST00000428651.2:ENST00000661513.1:ENST00000657334.1:ENST00000638047.1:ENST00000637554.1:ENST00000636956.1:ENST00000637665.1:ENST00000637476.1:ENST00000637324.1	lncRNA	lncRNA	lncRNA	lncRNA	0	26	2	4.12807	4.1856349999999996	4.2432	0.0479043	0.0338135	0.153019	0.146709
chr20	62948178	62948277	7299620	0	+	0.292929	(0.28,0.32]	chr20	742734	34	UTR3	UTR3:EXON_MRNA	GID8	ENSG00000101193.8	ENST00000266069.5	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.12807	4.1856349999999996	4.2432	0.0479043	0.0338135	0.153019	0.146709
chr3	146540945	146541039	1839276	0	-	0.319149	(0.28,0.32]	chr3	185033	2	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	PLSCR1	ENSG00000188313.13	ENST00000342435.9:ENST00000493432.5:ENST00000463777.5:ENST00000487389.5:ENST00000468985.5:ENST00000448787.6:ENST00000488253.5:ENST00000489775.5:ENST00000478267.5:ENST00000462666.5:ENST00000486631.5:ENST00000472349.1:ENST00000494568.5:ENST00000469266.1:ENST00000477974.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	26	2	4.12807	4.1856349999999996	4.2432	0.0479043	0.0338135	0.153019	0.146709
chr6	82205831	82205929	3143345	0	-	0.285714	(0.28,0.32]	chr6	293063	10	EXON_MRNA	EXON_MRNA:INTRON	IBTK	ENSG00000005700.15	ENST00000505222.5:ENST00000306270.12:ENST00000610980.4:ENST00000445419.6:ENST00000503400.5:ENST00000503631.5:ENST00000510291.5:ENST00000369751.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	26	2	4.12807	4.1856349999999996	4.2432	0.0479043	0.0338135	0.153019	0.146709
chr6	118545572	118545671	3199256	0	-	0.30303	(0.28,0.32]	chr6	298002	213	INTRON	INTRON	CEP85L	ENSG00000111860.14	ENST00000368491.8:ENST00000368488.9:ENST00000434604.5:ENST00000392500.7:ENST00000360290.7:ENST00000419517.2	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.12807	4.1856349999999996	4.2432	0.0479043	0.0338135	0.153019	0.146709
chr9	123902905	123903005	4345754	0	-	0.29	(0.28,0.32]	chr9	399137	235	INTRON	INTRON	DENND1A	ENSG00000119522.17	ENST00000373624.6:ENST00000394215.7:ENST00000373620.7:ENST00000373618.1	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.12807	4.1856349999999996	4.2432	0.0479043	0.0338135	0.153019	0.146709
chr7	102366076	102366176	3371095	0	+	0.28	[0,0.28]	chr7	315428	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	PRKRIP1:ENSG00000239969	ENSG00000128563.13:ENSG00000239969.6	ENST00000477886.5:ENST00000469763.5:ENST00000482549.5:ENST00000496391.5:ENST00000484974.5:ENST00000492837.1:ENST00000482465.5	protein_coding	protein_coding	protein_coding:transcribed_unprocessed_pseudogene	protein_coding:processed_transcript	4	130	2	1.94828	4.18562	6.42296	0.0191378	1.51071e-5	0.108861	0.00293131
chr11	27502719	27502819	4937511	0	-	0.33	(0.32,0.35]	chr11	462427	4	INTRON	INTRON	LIN7C	ENSG00000148943.12	ENST00000278193.7:ENST00000524596.1	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	3.91486	4.185575	4.45629	0.0450361	0.0246089	0.163255	0.12011
chr11	33340034	33340120	4767455	0	+	0.337209	(0.32,0.35]	chr11	440875	1	INTRON	INTRON	HIPK3	ENSG00000110422.12	ENST00000525975.5:ENST00000303296.9:ENST00000379016.7:ENST00000456517.2	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	3.91486	4.185575	4.45629	0.0450361	0.0246089	0.163255	0.12011
chr20	58989021	58989114	7291316	0	+	0.322581	(0.32,0.35]	chr20	741891	1	EXON_MRNA	EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NELFCD	ENSG00000101158.15	ENST00000602795.6:ENST00000652272.2:ENST00000460601.5:ENST00000482747.1:ENST00000477741.5:ENST00000474543.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	26	2	3.91486	4.185575	4.45629	0.0450361	0.0246089	0.163255	0.12011
chr3	47146943	47147042	1681434	0	-	0.323232	(0.32,0.35]	chr3	171624	199	INTRON	INTRON	SETD2	ENSG00000181555.22	ENST00000691544.1:ENST00000638947.2:ENST00000409792.4:ENST00000412450.1	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	3.91486	4.185575	4.45629	0.0450361	0.0246089	0.163255	0.12011
chr4	105431384	105431483	2216253	0	-	0.333333	(0.32,0.35]	chr4	217242	67	INTRON	INTRON	PPA2	ENSG00000138777.20	ENST00000341695.10:ENST00000348706.9:ENST00000509031.5:ENST00000351450.10:ENST00000354147.7:ENST00000432483.6:ENST00000515567.5:ENST00000503171.5:ENST00000510015.5:ENST00000509426.5:ENST00000508518.5:ENST00000514209.5:ENST00000506815.5:ENST00000457404.6:ENST00000502833.5:ENST00000504028.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	26	2	3.91486	4.185575	4.45629	0.0450361	0.0246089	0.163255	0.12011
chr4	158214016	158214112	2071238	0	+	0.34375	(0.32,0.35]	chr4	204924	1	INTRON	INTRON	TMEM144	ENSG00000164124.11	ENST00000505189.5:ENST00000505049.5:ENST00000508243.5:ENST00000512481.5:ENST00000504569.5:ENST00000514558.5:ENST00000296529.11:ENST00000503200.5:ENST00000511532.5:ENST00000502698.5:ENST00000514971.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	26	2	3.91486	4.185575	4.45629	0.0450361	0.0246089	0.163255	0.12011
chr5	27492671	27492770	2329797	0	+	0.323232	(0.32,0.35]	chr5	225123	29	INTRON	INTRON	PURPL	ENSG00000250337.8	ENST00000651409.1:ENST00000650981.1:ENST00000655107.1:ENST00000657375.2:ENST00000659077.1:ENST00000653835.1:ENST00000657173.1:ENST00000514844.6:ENST00000657424.1:ENST00000660307.1:ENST00000669423.1:ENST00000652841.1:ENST00000686605.1:ENST00000690628.1:ENST00000510165.6:ENST00000670554.1:ENST00000665451.1:ENST00000667624.1:ENST00000667420.1:ENST00000660639.1:ENST00000668406.1:ENST00000656783.1:ENST00000664566.1:ENST00000659489.1:ENST00000667264.1:ENST00000654039.1:ENST00000505775.5:ENST00000668103.1:ENST00000664501.1:ENST00000661698.1:ENST00000655438.1:ENST00000658312.1	lncRNA	lncRNA	lncRNA	lncRNA	0	26	2	3.91486	4.185575	4.45629	0.0450361	0.0246089	0.163255	0.12011
chr6	15372316	15372416	2824210	0	+	0.35	(0.32,0.35]	chr6	265192	574	INTRON	INTRON	JARID2	ENSG00000008083.14	ENST00000341776.7:ENST00000397311.4	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	3.91486	4.185575	4.45629	0.0450361	0.0246089	0.163255	0.12011
chr7	105855694	105855794	3607768	0	-	0.35	(0.32,0.35]	chr7	336411	666	INTRON	INTRON	ATXN7L1	ENSG00000146776.15	ENST00000419735.8:ENST00000318724.8:ENST00000478915.1:ENST00000481880.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	26	2	3.91486	4.185575	4.45629	0.0450361	0.0246089	0.163255	0.12011
chr8	47341967	47342067	3748037	0	+	0.33	(0.32,0.35]	chr8	348801	107	INTRON	INTRON	SPIDR	ENSG00000164808.17	ENST00000541342.2:ENST00000523814.5:ENST00000518074.5:ENST00000522900.5:ENST00000297423.9:ENST00000521550.5:ENST00000517824.5:ENST00000524126.5:ENST00000524141.5:ENST00000519661.5:ENST00000522222.5:ENST00000522117.5:ENST00000524033.5:ENST00000524006.5:ENST00000521214.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	26	2	3.91486	4.185575	4.45629	0.0450361	0.0246089	0.163255	0.12011
chrX	66174001	66174101	7672783	0	+	0.35	(0.32,0.35]	chrX	785277	2	SS5_PROX	SS5_PROX:INTRON	HEPH	ENSG00000089472.18	ENST00000519389.6:ENST00000683049.1:ENST00000458621.6:ENST00000684042.1:ENST00000343002.7:ENST00000336279.9:ENST00000441993.7:ENST00000419594.6:ENST00000682362.1:ENST00000425114.2:ENST00000682927.1:ENST00000683420.1:ENST00000684071.1:ENST00000684625.1:ENST00000684603.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	26	2	3.91486	4.185575	4.45629	0.0450361	0.0246089	0.163255	0.12011
chr1	19259828	19259928	39075	0	+	0.38	(0.378,0.408]	chr1	4679	11	UTR3	UTR3:EXON_MRNA	MRTO4	ENSG00000053372.5	ENST00000330263.5	protein_coding	protein_coding	protein_coding	protein_coding	1	57	2	3.32016	4.185535	5.05091	0.00268328	0.00118558	0.0464781	0.031662
chr16	24792784	24792878	6329851	0	+	0.457447	(0.44,0.476]	chr16	605964	6	INTRON	INTRON	TNRC6A	ENSG00000090905.19	ENST00000395799.8:ENST00000315183.11:ENST00000491718.5:ENST00000450465.6:ENST00000568903.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	73	2	2.42996	4.185405	5.94085	0.0104804	1.53199e-5	0.0855777	0.00293868
chr3	38372154	38372254	1399738	0	+	0.44	(0.408,0.44]	chr3	146825	1	SS3_PROX	SS3_PROX:INTRON	XYLB	ENSG00000093217.11	ENST00000207870.8:ENST00000650590.1:ENST00000424034.5:ENST00000649234.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	51	2	3.02513	4.185305	5.34548	0.0059965	9.40657e-4	0.0700606	0.0280776
chr8	9639451	9639551	3700338	0	+	0.25	[0,0.28]	chr8	343193	234	INTRON	INTRON	TNKS	ENSG00000173273.16	ENST00000310430.11:ENST00000520408.5:ENST00000518281.5:ENST00000518027.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	66	2	3.54621	4.18527	4.82433	0.0200334	0.00124865	0.109608	0.0328543
chr15	34388649	34388748	6132765	0	-	0.444444	(0.44,0.476]	chr15	584235	3	INTRON	INTRON	GOLGA8A	ENSG00000175265.18	ENST00000359187.5:ENST00000473125.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	54	2	2.9195	4.1852350000000005	5.45097	0.0102021	1.90652e-4	0.0850389	0.0120089
chr1	179155681	179155781	592339	0	-	0.39	(0.378,0.408]	chr1	71074	127	INTRON	INTRON	ABL2	ENSG00000143322.21	ENST00000502732.6:ENST00000367623.8:ENST00000507173.5:ENST00000511413.5:ENST00000668691.1:ENST00000392043.4:ENST00000660584.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	53	2	2.85854	4.18514	5.51174	0.0107837	5.93655e-4	0.0920575	0.0225024
chr1	179065089	179065182	266069	0	+	0.354839	(0.35,0.378]	chr1	31048	2	INTRON	INTRON	FAM20B	ENSG00000116199.12	ENST00000263733.5	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	4.07186	4.185125	4.29839	0.0294717	0.0279478	0.137011	0.128055
chr1	181012552	181012652	596247	0	-	0.37	(0.35,0.378]	chr1	71258	67	INTRON	INTRON	STX6	ENSG00000135823.14	ENST00000542060.5:ENST00000258301.6	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	4.07186	4.185125	4.29839	0.0294717	0.0279478	0.137011	0.128055
chr10	101398271	101398371	4510259	0	+	0.36	(0.35,0.378]	chr10	415398	433	INTRON	INTRON	BTRC	ENSG00000166167.18	ENST00000393441.8:ENST00000475200.5:ENST00000408038.6:ENST00000370187.8:ENST00000465182.1:ENST00000370183.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	25	2	4.07186	4.185125	4.29839	0.0294717	0.0279478	0.137011	0.128055
chr10	118319905	118320005	4703360	0	-	0.36	(0.35,0.378]	chr10	433803	82	INTRON	INTRON	FAM204A	ENSG00000165669.14	ENST00000369183.9:ENST00000491416.5:ENST00000470476.5:ENST00000469758.5:ENST00000369172.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	25	2	4.07186	4.185125	4.29839	0.0294717	0.0279478	0.137011	0.128055
chr12	132092714	132092814	5250271	0	+	0.37	(0.35,0.378]	chr12	499298	8	INTRON	INTRON	EP400P1	ENSG00000185684.16	ENST00000407361.8:ENST00000446190.5:ENST00000690966.1:ENST00000689047.1:ENST00000454179.7:ENST00000689533.1:ENST00000688036.1:ENST00000688136.1:ENST00000488030.5:ENST00000389560.6:ENST00000689403.1:ENST00000443539.6:ENST00000392352.5:ENST00000539205.5:ENST00000332441.7	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	25	2	4.07186	4.185125	4.29839	0.0294717	0.0279478	0.137011	0.128055
chr15	83035227	83035327	6249117	0	-	0.36	(0.35,0.378]	chr15	596398	45	INTRON	INTRON	BTBD1	ENSG00000064726.10	ENST00000261721.9:ENST00000379403.2:ENST00000559652.5:ENST00000560015.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	25	2	4.07186	4.185125	4.29839	0.0294717	0.0279478	0.137011	0.128055
chr16	30929483	30929572	6339710	0	+	0.370787	(0.35,0.378]	chr16	608038	5	INTRON	INTRON	FBXL19	ENSG00000099364.18	ENST00000471231.6:ENST00000338343.10:ENST00000562319.7:ENST00000565690.5:ENST00000427128.5	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	4.07186	4.185125	4.29839	0.0294717	0.0279478	0.137011	0.128055
chr17	19931891	19931978	6741620	0	-	0.356322	(0.35,0.378]	chr17	661886	2	CDS	CDS:EXON_MRNA:INTRON	AKAP10	ENSG00000108599.15	ENST00000225737.11:ENST00000395536.7	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	4.07186	4.185125	4.29839	0.0294717	0.0279478	0.137011	0.128055
chr19	36686185	36686284	7175265	0	-	0.353535	(0.35,0.378]	chr19	725119	37	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ZNF567-DT	ENSG00000225975.8	ENST00000665321.2:ENST00000425254.3:ENST00000433232.5:ENST00000590952.2:ENST00000690752.1:ENST00000687321.1	lncRNA	lncRNA	lncRNA	lncRNA	0	25	2	4.07186	4.185125	4.29839	0.0294717	0.0279478	0.137011	0.128055
chr4	2002745	2002844	2095988	0	-	0.353535	(0.35,0.378]	chr4	207403	103	INTRON	INTRON	NELFA	ENSG00000185049.16	ENST00000542778.5:ENST00000382882.9:ENST00000333877.8:ENST00000431323.6:ENST00000455762.5:ENST00000421397.5:ENST00000411649.3:ENST00000443203.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	25	2	4.07186	4.185125	4.29839	0.0294717	0.0279478	0.137011	0.128055
chr5	127052291	127052381	2714633	0	-	0.366667	(0.35,0.378]	chr5	255298	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	C5orf63	ENSG00000164241.14	ENST00000535381.6:ENST00000508527.5:ENST00000296662.10:ENST00000607731.5:ENST00000606937.6:ENST00000606042.1:ENST00000682830.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	25	2	4.07186	4.185125	4.29839	0.0294717	0.0279478	0.137011	0.128055
chr5	173000105	173000205	2548331	0	+	0.37	(0.35,0.378]	chr5	243297	49	INTRON	INTRON	ATP6V0E1	ENSG00000113732.9	ENST00000519374.6:ENST00000519911.5:ENST00000265093.4:ENST00000517669.1	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	4.07186	4.185125	4.29839	0.0294717	0.0279478	0.137011	0.128055
chr2	26372074	26372173	715275	0	+	0.373737	(0.35,0.378]	chr2	82589	45	INTRON	INTRON	SELENOI	ENSG00000138018.19	ENST00000442141.5:ENST00000260585.12:ENST00000447170.1	protein_coding	protein_coding	protein_coding	protein_coding	1	53	2	3.26794	4.1851	5.10226	0.00327038	0.00257067	0.0508595	0.0466761
chr12	759308	759407	5056244	0	+	0.444444	(0.44,0.476]	chr12	477423	46	INTRON	INTRON	WNK1	ENSG00000060237.19	ENST00000315939.11:ENST00000340908.9:ENST00000535572.5:ENST00000537687.5:ENST00000530271.6:ENST00000447667.2	protein_coding	protein_coding	protein_coding	protein_coding	1	54	2	3.12799	4.18505	5.24211	0.0050635	4.87398e-4	0.0621733	0.0199652
chr6	7611268	7611368	2800350	0	+	0.45	(0.44,0.476]	chr6	263947	25	UTR3	UTR3:EXON_MRNA	SNRNP48	ENSG00000168566.13	ENST00000342415.6	protein_coding	protein_coding	protein_coding	protein_coding	1	54	2	3.12799	4.18505	5.24211	0.0050635	4.87398e-4	0.0621733	0.0199652
chr16	89895489	89895563	6422666	0	+	0.5	(0.476,0.515]	chr16	616773	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TCF25	ENSG00000141002.20	ENST00000640279.1:ENST00000263347.11:ENST00000263346.13:ENST00000568412.5:ENST00000562256.5:ENST00000568409.5:ENST00000562184.5:ENST00000563636.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	72	2	2.69886	4.1850000000000005	5.67114	0.00385209	6.83906e-5	0.0542786	0.00684369
chr7	137886699	137886799	3654578	0	-	0.39	(0.378,0.408]	chr7	339315	8	INTRON	INTRON	CREB3L2	ENSG00000182158.16	ENST00000330387.11:ENST00000456390.5	protein_coding	protein_coding	protein_coding	protein_coding	1	52	2	3.4275	4.1850000000000005	4.9425	0.00452675	0.00126053	0.0595107	0.03295
chr15	41300038	41300138	6004549	0	+	0.46	(0.44,0.476]	chr15	571273	21	EXON_LNCRNA	EXON_LNCRNA:INTRON	OIP5-AS1	ENSG00000247556.6	ENST00000500949.6:ENST00000501665.2	lncRNA	lncRNA	lncRNA	lncRNA	2	68	2	2.59888	4.1847449999999995	5.77061	0.00487719	1.44264e-4	0.0640618	0.0109794
chr6	169691983	169692082	3267028	0	-	0.474747	(0.44,0.476]	chr6	303253	23	INTRON	INTRON	WDR27	ENSG00000184465.16	ENST00000448612.6:ENST00000648472.1:ENST00000423258.5:ENST00000647790.1:ENST00000647873.1:ENST00000649303.1:ENST00000647889.1:ENST00000648017.1:ENST00000650296.1:ENST00000546953.1:ENST00000649806.1:ENST00000474018.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	68	2	2.59888	4.1847449999999995	5.77061	0.00487719	1.44264e-4	0.0640618	0.0109794
chr9	35069224	35069324	4247460	0	-	0.39	(0.378,0.408]	chr9	390813	4	SS3_PROX	SS3_PROX:INTRON	VCP	ENSG00000165280.18	ENST00000679902.1:ENST00000678465.1:ENST00000677257.1:ENST00000679800.1:ENST00000678018.1:ENST00000678650.1:ENST00000448530.6:ENST00000358901.11:ENST00000679647.1:ENST00000681335.1:ENST00000417448.2:ENST00000680916.1:ENST00000679599.1:ENST00000679862.1:ENST00000681690.1:ENST00000679204.2:ENST00000676836.2:ENST00000493886.5:ENST00000480327.2:ENST00000680079.1:ENST00000681386.1:ENST00000679392.1:ENST00000680575.1:ENST00000680108.1:ENST00000679901.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	52	2	2.9917	4.184545	5.37739	0.0068789	0.0010014	0.0749442	0.0288906
chr3	43620675	43620774	1675432	0	-	0.535354	(0.515,0.57]	chr3	171046	22	INTRON	INTRON	ANO10	ENSG00000160746.13	ENST00000292246.8:ENST00000350459.8:ENST00000396091.7:ENST00000414522.6:ENST00000451430.6:ENST00000427171.5:ENST00000428472.5:ENST00000444344.5:ENST00000456438.5:ENST00000413397.5:ENST00000439141.5:ENST00000428831.1:ENST00000436073.1	protein_coding	protein_coding	protein_coding	protein_coding	1	47	2	3.53085	4.184245000000001	4.83764	0.00279527	6.59951e-4	0.0469265	0.0232396
chr1	42701796	42701880	84144	0	+	0.404762	(0.378,0.408]	chr1	11049	4	SS3_PROX	SS3_PROX:INTRON	YBX1	ENSG00000065978.19	ENST00000321358.12:ENST00000436427.1	protein_coding	protein_coding	protein_coding	protein_coding	2	70	2	3.08809	4.18421	5.28033	0.00143651	5.71831e-4	0.0340925	0.0217398
chr1	236226350	236226432	664587	0	-	0.402439	(0.378,0.408]	chr1	78678	2	CDS	CDS:EXON_MRNA	ERO1B	ENSG00000086619.15	ENST00000685201.1:ENST00000688164.1:ENST00000691874.1:ENST00000693072.1:ENST00000354619.10:ENST00000687487.1:ENST00000264181.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	70	2	3.08809	4.18421	5.28033	0.00143651	5.71831e-4	0.0340925	0.0217398
chr6	43577636	43577735	2871489	0	+	0.333333	(0.32,0.35]	chr6	272252	8	INTRON	INTRON	POLH	ENSG00000170734.12	ENST00000372236.9:ENST00000372226.1:ENST00000443535.1	protein_coding	protein_coding	protein_coding	protein_coding	1	55	2	3.18392	4.184035	5.18415	0.00379806	0.00333629	0.0562562	0.0512081
chr20	21303773	21303873	7248141	0	+	0.53	(0.515,0.57]	chr20	735884	3	SS5_PROX	SS5_PROX:INTRON	XRN2	ENSG00000088930.8	ENST00000377191.5	protein_coding	protein_coding	protein_coding	protein_coding	1	47	2	2.98677	4.183765	5.38076	0.00632549	3.24968e-4	0.0722266	0.0165891
chr10	5448251	5448350	4384218	0	+	0.373737	(0.35,0.378]	chr10	404411	10	INTRON	INTRON	NET1	ENSG00000173848.19	ENST00000355029.9:ENST00000449083.5:ENST00000486354.1:ENST00000380359.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	74	2	3.20997	4.1836	5.15723	0.00272706	3.32797e-4	0.0467523	0.0162254
chr1	35918523	35918554	71013	0	+	0.354839	(0.35,0.378]	chr1	9112	1	SS5_PROX	SS5_PROX:INTRON	AGO1	ENSG00000092847.13	ENST00000373206.5:ENST00000373204.6:ENST00000674426.1:ENST00000674304.1:ENST00000635259.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	26	2	3.80129	4.183395	4.5655	0.0504034	0.0155464	0.17488	0.100909
chr13	114316136	114316236	5551094	0	+	0.37	(0.35,0.378]	chr13	530596	11	INTRON	INTRON	CHAMP1	ENSG00000198824.7	ENST00000646956.1:ENST00000463003.2:ENST00000645174.1:ENST00000361283.4:ENST00000646155.1:ENST00000478022.3:ENST00000644294.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	26	2	3.80129	4.183395	4.5655	0.0504034	0.0155464	0.17488	0.100909
chr15	22890294	22890393	6119193	0	-	0.363636	(0.35,0.378]	chr15	582541	69	INTRON	INTRON	CYFIP1	ENSG00000273749.5	ENST00000617928.5:ENST00000617556.4:ENST00000610365.4:ENST00000619348.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	26	2	3.80129	4.183395	4.5655	0.0504034	0.0155464	0.17488	0.100909
chr15	28166311	28166408	6122430	0	-	0.350515	(0.35,0.378]	chr15	583070	27	INTRON	INTRON	HERC2	ENSG00000128731.18	ENST00000261609.13:ENST00000650509.1:ENST00000569772.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	26	2	3.80129	4.183395	4.5655	0.0504034	0.0155464	0.17488	0.100909
chr9	4706112	4706211	4094841	0	+	0.373737	(0.35,0.378]	chr9	373149	1	UTR3	UTR3:EXON_MRNA	CDC37L1	ENSG00000106993.12	ENST00000381854.4	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	3.80129	4.183395	4.5655	0.0504034	0.0155464	0.17488	0.100909
chr3	6613040	6613140	1357374	0	+	0.4	(0.378,0.408]	chr3	142522	286	INTRON	INTRON	ENSG00000189229	ENSG00000189229.12	ENST00000433639.1:ENST00000655754.1:ENST00000658468.1:ENST00000669512.1:ENST00000667028.1:ENST00000655541.1:ENST00000668643.1:ENST00000671568.1:ENST00000671036.1:ENST00000669798.1:ENST00000655753.1:ENST00000655856.1:ENST00000658398.1:ENST00000661518.1:ENST00000661279.1:ENST00000655495.1:ENST00000663041.1:ENST00000659827.1:ENST00000667716.1:ENST00000668416.1:ENST00000658133.1:ENST00000342990.4:ENST00000660054.1:ENST00000671370.1	lncRNA	lncRNA	lncRNA	lncRNA	2	118	2	4.0017	4.183389999999999	4.36508	7.73853e-5	2.15438e-5	0.00735438	0.00377986
chr12	121315088	121315188	5436791	0	-	0.29	(0.28,0.32]	chr12	519847	47	INTRON	INTRON	ANAPC5	ENSG00000089053.13	ENST00000261819.8:ENST00000535641.5:ENST00000541887.5:ENST00000534976.5:ENST00000441917.6:ENST00000539079.5:ENST00000544314.5:ENST00000535482.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	58	2	3.26551	4.1831	5.10069	0.00610574	0.0030714	0.0676501	0.0509893
chr9	120778150	120778250	4335311	0	-	0.32	(0.28,0.32]	chr9	398248	4	SS5_PROX	SS5_PROX:INTRON	FBXW2	ENSG00000119402.18	ENST00000684405.1:ENST00000684001.1:ENST00000684047.1:ENST00000608872.6:ENST00000453291.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	58	2	3.26551	4.1831	5.10069	0.00610574	0.0030714	0.0676501	0.0509893
chr10	74063821	74063890	4455161	0	+	0.333333	(0.32,0.35]	chr10	411400	3	EXON_LNCRNA	EXON_LNCRNA:INTRON	VCL	ENSG00000035403.18	ENST00000623461.3:ENST00000372755.7:ENST00000624354.3:ENST00000211998.10:ENST00000478896.2:ENST00000461383.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	60	2	2.79707	4.18307	5.56907	0.0170923	2.27532e-4	0.104099	0.0133228
chr7	130049942	130050042	3638316	0	-	0.34	(0.32,0.35]	chr7	338328	1	SS5_PROX	SS5_PROX:INTRON	ZC3HC1	ENSG00000091732.17	ENST00000311873.9:ENST00000358303.9:ENST00000360708.9:ENST00000467642.5:ENST00000648450.1:ENST00000481503.5:ENST00000471022.5:ENST00000483827.1:ENST00000480193.5:ENST00000470651.1:ENST00000484432.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	60	2	3.07935	4.182824999999999	5.2863	0.00724137	7.56575e-4	0.0729826	0.0251966
chr11	63685473	63685573	4799953	0	+	0.36	(0.35,0.378]	chr11	444936	33	INTRON	INTRON	RTN3	ENSG00000133318.14	ENST00000341307.6:ENST00000356000.7:ENST00000542238.5:ENST00000538995.1:ENST00000339997.8:ENST00000540798.5:ENST00000537981.5:ENST00000377819.10:ENST00000536011.5:ENST00000543123.1:ENST00000543552.5:ENST00000545432.5:ENST00000338850.5:ENST00000354497.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	58	2	2.72497	4.182815	5.64066	0.0198266	1.14247e-4	0.109608	0.0091431
chr7	30593314	30593413	3513424	0	-	0.434343	(0.408,0.44]	chr7	327606	66	INTRON	INTRON	GARS1-DT	ENSG00000196295.13	ENST00000426529.6:ENST00000656284.1:ENST00000660767.1:ENST00000584199.5:ENST00000581794.6:ENST00000581665.6:ENST00000663944.1:ENST00000584372.5:ENST00000582733.5:ENST00000579174.5:ENST00000689508.1:ENST00000580440.7:ENST00000578994.5:ENST00000583664.5:ENST00000582549.1:ENST00000656943.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	3	88	2	2.42404	4.18273	5.94142	0.00413548	1.51568e-5	0.0566868	0.00293131
chr7	97149016	97149116	3357274	0	+	0.5	(0.476,0.515]	chr7	313218	58	INTRON	INTRON	SDHAF3	ENSG00000196636.8	ENST00000432641.3:ENST00000360382.4:ENST00000479853.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	68	2	3.00507	4.182510000000001	5.35995	8.38796e-4	7.54256e-4	0.0263691	0.0251179
chr5	119073840	119073939	2459789	0	+	0.30303	(0.28,0.32]	chr5	235574	18	INTRON	INTRON	DMXL1	ENSG00000172869.15	ENST00000509902.5:ENST00000539542.6:ENST00000503802.5:ENST00000311085.8:ENST00000510924.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	119	2	2.12972	4.182285	6.23485	0.00413957	1.00183e-4	0.0588921	0.00904854
chr4	2855628	2855728	1915144	0	+	0.34	(0.32,0.35]	chr4	192260	2	INTRON	INTRON	ADD1	ENSG00000087274.19	ENST00000683351.1:ENST00000398125.5:ENST00000264758.11:ENST00000508684.5:ENST00000510101.5:ENST00000511797.5:ENST00000513328.6:ENST00000509039.5:ENST00000508277.5:ENST00000503455.6:ENST00000540541.1:ENST00000355842.7:ENST00000651918.1:ENST00000374281.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	55	2	3.23331	4.18227	5.13123	0.00394704	0.00315414	0.0548259	0.0515261
chr6	87229328	87229428	2914003	0	+	0.31	(0.28,0.32]	chr6	275311	55	INTRON	INTRON	ZNF292	ENSG00000188994.13	ENST00000369577.8:ENST00000518845.1:ENST00000339907.8:ENST00000496806.2	protein_coding	protein_coding	protein_coding	protein_coding	1	63	2	2.91851	4.18217	5.44583	0.0130672	5.8721e-4	0.093385	0.0220073
chr7	129051166	129051266	3636544	0	-	0.22	[0,0.28]	chr7	338148	91	INTRON	INTRON	TNPO3	ENSG00000064419.14	ENST00000627585.2:ENST00000265388.10:ENST00000471234.5:ENST00000482320.5:ENST00000471166.1	protein_coding	protein_coding	protein_coding	protein_coding	2	85	2	2.41169	4.1814800000000005	5.95127	0.0122872	7.37141e-4	0.0970106	0.02495
chr7	64535511	64535611	3537043	0	-	0.33	(0.32,0.35]	chr7	329904	86	INTRON	INTRON	ZNF680	ENSG00000173041.12	ENST00000309683.11:ENST00000476563.1:ENST00000470847.1:ENST00000447137.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	61	2	2.6321	4.18147	5.73084	0.0268	1.07676e-4	0.123349	0.00878438
chr4	73248285	73248385	2160722	0	-	0.35	(0.32,0.35]	chr4	212799	253	INTRON	INTRON	ANKRD17	ENSG00000132466.20	ENST00000358602.9:ENST00000558247.5:ENST00000330838.10:ENST00000561029.1	protein_coding	protein_coding	protein_coding	protein_coding	2	81	2	2.63115	4.180994999999999	5.73084	0.00608073	1.07676e-4	0.0676501	0.00878438
chr1	203811707	203811807	296841	0	+	0.34	(0.32,0.35]	chr1	34134	83	INTRON	INTRON	ZC3H11A:ZBED6	ENSG00000058673.17:ENSG00000257315.3	ENST00000367210.3:ENST00000453771.5:ENST00000432282.5:ENST00000638800.1:ENST00000367214.5:ENST00000639812.1:ENST00000367212.7:ENST00000332127.8:ENST00000550078.2:ENST00000495527.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	74	2	2.89475	4.180585000000001	5.46642	0.00160352	0.00127669	0.0367961	0.0326395
chr15	56956575	56956675	6032491	0	+	0.31	(0.28,0.32]	chr15	574663	351	INTRON	INTRON	TCF12	ENSG00000140262.18	ENST00000438423.6:ENST00000267811.9:ENST00000333725.10:ENST00000560190.5:ENST00000559609.5:ENST00000558908.5:ENST00000557843.5:ENST00000557947.5:ENST00000561152.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	59	2	3.43186	4.180575	4.92929	0.0098607	0.00160646	0.0838128	0.0367961
chr11	78404359	78404459	5000253	0	-	0.51	(0.476,0.515]	chr11	472472	399	INTRON	INTRON	GAB2	ENSG00000033327.13	ENST00000361507.5:ENST00000526030.1:ENST00000528886.5:ENST00000530915.1:ENST00000534823.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	175	2	3.66425	4.180540000000001	4.69683	3.19095e-6	2.34578e-6	0.00115727	0.00106747
chr8	108247423	108247522	4023265	0	-	0.323232	(0.32,0.35]	chr8	367690	41	EXON_MRNA	EXON_MRNA:INTRON	EIF3E	ENSG00000104408.11	ENST00000678042.1:ENST00000678773.1:ENST00000677409.1:ENST00000676892.1:ENST00000523674.2:ENST00000677674.1:ENST00000220849.10:ENST00000678937.1:ENST00000677084.1:ENST00000676706.1:ENST00000518100.6:ENST00000677040.1:ENST00000676698.1:ENST00000522352.6:ENST00000521297.2:ENST00000519030.6:ENST00000519627.2:ENST00000518345.2:ENST00000522445.6:ENST00000678334.1:ENST00000678023.1:ENST00000678797.1:ENST00000677614.1:ENST00000676642.1:ENST00000677965.1:ENST00000678901.1:ENST00000678243.1:ENST00000676663.1:ENST00000679198.1:ENST00000678004.1:ENST00000678881.1:ENST00000677590.1:ENST00000677272.1:ENST00000677746.1:ENST00000677447.1:ENST00000676548.1:ENST00000676487.1:ENST00000521440.6:ENST00000518442.5:ENST00000522887.1:ENST00000518634.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	74	2	2.58753	4.180365	5.7732	0.00560122	3.96807e-4	0.0678837	0.0185763
chr17	15535980	15536080	6732190	0	-	0.47	(0.44,0.476]	chr17	660304	50	INTRON	INTRON	TVP23C-CDRT4:TVP23C	ENSG00000259024.6:ENSG00000175106.17	ENST00000522212.6:ENST00000557349.5:ENST00000481756.7:ENST00000518506.4:ENST00000225576.7:ENST00000581273.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	92	2	2.35576	4.18025	6.00474	0.00208591	4.73674e-5	0.0424672	0.00593269
chr1	12076101	12076201	27089	0	+	0.51	(0.476,0.515]	chr1	3232	121	INTRON	INTRON	TNFRSF8	ENSG00000120949.15	ENST00000263932.7:ENST00000417814.3:ENST00000514649.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	25	2	3.83018	4.180205	4.53023	0.0423385	0.0119748	0.161744	0.0899583
chr1	17421802	17421902	384803	0	-	0.5	(0.476,0.515]	chr1	45472	2	SS5_PROX	SS5_PROX:INTRON	RCC2	ENSG00000179051.14	ENST00000375436.9:ENST00000375433.3	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	3.83018	4.180205	4.53023	0.0423385	0.0119748	0.161744	0.0899583
chr10	6156236	6156336	4386107	0	+	0.51	(0.476,0.515]	chr10	404830	64	INTRON	INTRON	PFKFB3	ENSG00000170525.21	ENST00000379789.8:ENST00000536985.6	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	3.83018	4.180205	4.53023	0.0423385	0.0119748	0.161744	0.0899583
chr10	92576586	92576685	4490510	0	+	0.515152	(0.476,0.515]	chr10	413530	20	INTRON	INTRON	KIF11	ENSG00000138160.7	ENST00000676757.1	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	3.83018	4.180205	4.53023	0.0423385	0.0119748	0.161744	0.0899583
chr11	35762012	35762112	4771064	0	+	0.51	(0.476,0.515]	chr11	441389	262	INTRON	INTRON	TRIM44	ENSG00000166326.7	ENST00000299413.7:ENST00000532066.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	25	2	3.83018	4.180205	4.53023	0.0423385	0.0119748	0.161744	0.0899583
chr13	108217174	108217273	5649038	0	-	0.515152	(0.476,0.515]	chr13	538185	18	UTR5	UTR5:EXON_MRNA:INTRON	LIG4	ENSG00000174405.15	ENST00000405925.2:ENST00000688455.1:ENST00000692222.1:ENST00000688396.1:ENST00000687822.1:ENST00000688595.1:ENST00000686204.1	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	3.83018	4.180205	4.53023	0.0423385	0.0119748	0.161744	0.0899583
chr14	90804295	90804395	5951625	0	-	0.48	(0.476,0.515]	chr14	565050	176	INTRON	INTRON	TTC7B	ENSG00000165914.15	ENST00000328459.11:ENST00000553948.1	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	3.83018	4.180205	4.53023	0.0423385	0.0119748	0.161744	0.0899583
chr17	31198695	31198795	6592182	0	+	0.5	(0.476,0.515]	chr17	641101	154	INTRON	INTRON	NF1	ENSG00000196712.20	ENST00000696138.1:ENST00000356175.7:ENST00000487476.5:ENST00000691014.1:ENST00000358273.9:ENST00000431387.8:ENST00000579081.5:ENST00000495910.6:ENST00000686189.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	25	2	3.83018	4.180205	4.53023	0.0423385	0.0119748	0.161744	0.0899583
chr3	52704125	52704223	1700893	0	-	0.510204	(0.476,0.515]	chr3	175133	2	SS3_PROX	SS3_PROX:INTRON	GLT8D1	ENSG00000016864.19	ENST00000266014.11:ENST00000478968.6:ENST00000491606.5:ENST00000484163.5:ENST00000497436.5:ENST00000497953.5:ENST00000487642.5:ENST00000464705.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	25	2	3.83018	4.180205	4.53023	0.0423385	0.0119748	0.161744	0.0899583
chr4	55454421	55454518	2148966	0	-	0.484536	(0.476,0.515]	chr4	211468	2	INTRON	INTRON	CLOCK	ENSG00000134852.15	ENST00000513440.6:ENST00000309964.8:ENST00000381322.5:ENST00000506747.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	25	2	3.83018	4.180205	4.53023	0.0423385	0.0119748	0.161744	0.0899583
chr4	110157482	110157581	2227323	0	-	0.494949	(0.476,0.515]	chr4	218024	515	INTRON	INTRON	ELOVL6	ENSG00000170522.10	ENST00000394607.7:ENST00000302274.8:ENST00000514184.5:ENST00000506625.5:ENST00000506461.1:ENST00000503885.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	25	2	3.83018	4.180205	4.53023	0.0423385	0.0119748	0.161744	0.0899583
chr7	152299070	152299170	3679913	0	-	0.48	(0.476,0.515]	chr7	341623	123	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000684262.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	25	2	3.83018	4.180205	4.53023	0.0423385	0.0119748	0.161744	0.0899583
chrX	139900138	139900238	7905576	0	-	0.5	(0.476,0.515]	chrX	804457	680	INTRON	INTRON	ATP11C	ENSG00000101974.15	ENST00000370557.5:ENST00000682941.1:ENST00000485626.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	25	2	3.83018	4.180205	4.53023	0.0423385	0.0119748	0.161744	0.0899583
chr17	49772444	49772543	6794242	0	-	0.525253	(0.515,0.57]	chr17	670440	64	INTRON	INTRON	FAM117A	ENSG00000121104.8	ENST00000513602.5:ENST00000503855.5:ENST00000514018.5:ENST00000505159.5:ENST00000509347.5:ENST00000503720.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	49	2	2.74772	4.18013	5.61254	0.0142192	1.10757e-4	0.103638	0.00945003
chr16	401073	401166	6272068	0	+	0.612903	(0.57,1]	chr16	598490	4	INTRON	INTRON	NME4	ENSG00000103202.13	ENST00000444498.5	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	2	45	2	2.73474	4.179825	5.62491	0.00241874	6.73465e-6	0.0454275	0.00194394
chr1	219914564	219914663	637918	0	-	0.272727	[0,0.28]	chr1	75124	43	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	SLC30A10	ENSG00000196660.12	ENST00000484239.5:ENST00000696608.1:ENST00000366926.4:ENST00000356609.2:ENST00000484079.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	84	2	2.6958	4.179765	5.66373	0.00456758	0.00196371	0.0622215	0.0401678
chr6	7160677	7160777	2798894	0	+	0.41	(0.408,0.44]	chr6	263733	195	INTRON	INTRON	RREB1	ENSG00000124782.21	ENST00000379933.7:ENST00000491191.5:ENST00000471433.5:ENST00000379938.7:ENST00000467782.5:ENST00000349384.10:ENST00000334984.10:ENST00000475946.5:ENST00000483150.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	111	2	4.03858	4.179755	4.32093	1.05823e-4	1.15245e-5	0.00920724	0.00250519
chr8	89757430	89757525	3985281	0	-	0.621053	(0.57,1]	chr8	365003	9	EXON_LNCRNA	EXON_LNCRNA	RIPK2-DT	ENSG00000251136.10	ENST00000661105.1:ENST00000519655.6:ENST00000504145.6:ENST00000653574.1:ENST00000521996.2:ENST00000655144.2	lncRNA	lncRNA	lncRNA	lncRNA	1	34	2	3.5592	4.179655	4.80011	6.07135e-4	4.21089e-4	0.0226059	0.0183576
chr11	651807	651907	4889038	0	-	0.57	(0.515,0.57]	chr11	457694	4	SS3_PROX	SS3_PROX:INTRON	DEAF1	ENSG00000177030.19	ENST00000382409.4:ENST00000527170.5:ENST00000685854.1:ENST00000683307.1:ENST00000528864.6:ENST00000525626.6:ENST00000682936.1:ENST00000690068.1:ENST00000692634.1:ENST00000687329.1:ENST00000686001.1:ENST00000689835.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	46	2	3.25412	4.1793	5.10448	0.00224554	0.0010345	0.0435144	0.029231300000000002
chr17	38889222	38889322	6606598	0	+	0.52	(0.515,0.57]	chr17	643195	107	INTRON	INTRON	LASP1	ENSG00000002834.18	ENST00000433206.6:ENST00000585841.5:ENST00000318008.11:ENST00000443937.7:ENST00000584106.1:ENST00000435347.7:ENST00000419929.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	46	2	3.25412	4.1793	5.10448	0.00224554	0.0010345	0.0435144	0.029231300000000002
chr19	3440571	3440670	7000374	0	+	0.545455	(0.515,0.57]	chr19	694202	50	INTRON	INTRON	NFIC	ENSG00000141905.19	ENST00000641145.1:ENST00000589123.5:ENST00000395111.7:ENST00000586919.5:ENST00000341919.7:ENST00000443272.3:ENST00000590282.5:ENST00000589537.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	46	2	3.25412	4.1793	5.10448	0.00224554	0.0010345	0.0435144	0.029231300000000002
chr4	126586901	126587001	2236578	0	-	0.33	(0.32,0.35]	chr4	219023	1214	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	2	128	2	3.85404	4.17929	4.50454	3.75908e-4	5.92228e-6	0.0179813	0.00170648
chr5	32169948	32170048	2597472	0	-	0.33	(0.32,0.35]	chr5	246744	257	INTRON	INTRON	GOLPH3	ENSG00000113384.14	ENST00000265070.7:ENST00000503610.5:ENST00000512668.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	75	2	2.45306	4.179105	5.90515	0.00916394	2.30541e-4	0.0855292	0.013917
chr5	54327914	54328014	2353900	0	+	0.45	(0.44,0.476]	chr5	227055	46	INTRON	INTRON	LINC01033	ENSG00000249069.8	ENST00000665899.1:ENST00000653566.1:ENST00000655801.1:ENST00000654906.1:ENST00000667636.1:ENST00000665869.1:ENST00000664079.1:ENST00000659703.1:ENST00000662351.1:ENST00000523194.7:ENST00000665795.1:ENST00000667992.1:ENST00000662022.1:ENST00000657771.1:ENST00000517934.1	lncRNA	lncRNA	lncRNA	lncRNA	2	67	2	2.78129	4.17892	5.57655	0.00229634	3.3967e-4	0.0439319	0.0170719
chr10	21699215	21699315	4406082	0	+	0.33	(0.32,0.35]	chr10	406537	22	INTRON	INTRON	MLLT10	ENSG00000078403.17	ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000651298.1:ENST00000377059.7:ENST00000651382.1:ENST00000438473.6:ENST00000420525.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	55	2	3.28107	4.17868	5.07629	0.00468114	0.00262488	0.0600108	0.0470772
chr8	20220899	20220999	3710851	0	+	0.34	(0.32,0.35]	chr8	344370	6	UTR3	UTR3:EXON_MRNA:INTRON	ATP6V1B2	ENSG00000147416.11	ENST00000276390.7:ENST00000523482.5:ENST00000521442.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	55	2	3.28107	4.17868	5.07629	0.00468114	0.00262488	0.0600108	0.0470772
chr15	63584028	63584127	6042721	0	+	0.353535	(0.35,0.378]	chr15	575454	93	INTRON	INTRON	USP3	ENSG00000140455.17	ENST00000540797.5:ENST00000380324.8:ENST00000558157.5:ENST00000559873.5:ENST00000559192.5:ENST00000268049.11:ENST00000558285.5:ENST00000559257.5:ENST00000538686.6:ENST00000559711.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	57	2	2.94111	4.17863	5.41615	0.0104563	3.21724e-4	0.0855102	0.0159645
chr4	139058002	139058100	2246138	0	-	0.367347	(0.35,0.378]	chr4	219525	9	UTR3	UTR3:EXON_MRNA:INTRON	ELF2	ENSG00000109381.21	ENST00000515489.1:ENST00000394235.6:ENST00000686138.1:ENST00000379550.5:ENST00000358635.7:ENST00000379549.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	57	2	2.94111	4.17863	5.41615	0.0104563	3.21724e-4	0.0855102	0.0159645
chr1	88760576	88760676	156534	0	+	0.29	(0.28,0.32]	chr1	17056	2	SS5_PROX	SS5_PROX:INTRON	PKN2	ENSG00000065243.20	ENST00000316005.11:ENST00000370521.8:ENST00000370513.9	protein_coding	protein_coding	protein_coding	protein_coding	2	78	2	2.87934	4.178565	5.47779	0.00189034	0.00187048	0.0402736	0.0390476
chr12	42420449	42420549	5119185	0	+	0.46	(0.44,0.476]	chr12	482988	201	INTRON	INTRON	PPHLN1	ENSG00000134283.18	ENST00000549190.5:ENST00000337898.10:ENST00000395580.7:ENST00000610488.4:ENST00000619544.4:ENST00000613154.4:ENST00000395568.6:ENST00000256678.12:ENST00000358314.12:ENST00000449194.6:ENST00000552761.5:ENST00000317560.13:ENST00000432191.6	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	3.8344	4.17855	4.5227	0.041276	0.0128818	0.161534	0.0926667
chr17	50702199	50702298	6795252	0	-	0.454545	(0.44,0.476]	chr17	670788	11	INTRON	INTRON	ANKRD40	ENSG00000154945.7	ENST00000285243.7:ENST00000507114.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	25	2	3.8344	4.17855	4.5227	0.041276	0.0128818	0.161534	0.0926667
chr2	32800134	32800234	735245	0	+	0.46	(0.44,0.476]	chr2	84841	126	INTRON	INTRON	TTC27	ENSG00000018699.13	ENST00000317907.9:ENST00000647819.1:ENST00000428527.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	25	2	3.8344	4.17855	4.5227	0.041276	0.0128818	0.161534	0.0926667
chr4	48850672	48850762	1958418	0	+	0.466667	(0.44,0.476]	chr4	196245	2	INTRON	INTRON	OCIAD1	ENSG00000109180.15	ENST00000509122.5:ENST00000505922.6:ENST00000512981.5:ENST00000396448.6:ENST00000512236.5:ENST00000381473.7:ENST00000511102.5:ENST00000264312.12:ENST00000444354.6:ENST00000509246.5:ENST00000506801.5:ENST00000503016.5:ENST00000510824.5:ENST00000425583.6:ENST00000508293.5:ENST00000513391.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	25	2	3.8344	4.17855	4.5227	0.041276	0.0128818	0.161534	0.0926667
chr7	45022722	45022821	3316136	0	+	0.464646	(0.44,0.476]	chr7	308173	220	INTRON	INTRON	CCM2	ENSG00000136280.17	ENST00000461377.5:ENST00000544363.5:ENST00000541586.5:ENST00000478582.5:ENST00000258781.11:ENST00000488727.5:ENST00000648329.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	25	2	3.8344	4.17855	4.5227	0.041276	0.0128818	0.161534	0.0926667
chr5	31428485	31428583	2595938	0	-	0.336735	(0.32,0.35]	chr5	246550	37	INTRON	INTRON	DROSHA	ENSG00000113360.17	ENST00000344624.8:ENST00000511367.6:ENST00000513349.5:ENST00000504133.5:ENST00000510178.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	55	2	3.0247	4.17844	5.33218	0.00671684	0.00204346	0.0738715	0.04086
chr3	45692480	45692579	1417069	0	+	0.474747	(0.44,0.476]	chr3	148654	17	INTRON	INTRON	SACM1L	ENSG00000211456.13	ENST00000464524.5:ENST00000455997.5:ENST00000418611.5:ENST00000672477.1:ENST00000463237.5:ENST00000441228.5:ENST00000463347.5:ENST00000438671.3:ENST00000389061.10:ENST00000445499.2:ENST00000478586.3:ENST00000672858.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	68	2	3.05373	4.178315	5.3029	0.00102616	6.56725e-4	0.029231300000000002	0.0232396
chr10	6095152	6095252	4385751	0	+	0.42	(0.408,0.44]	chr10	404761	48	INTRON	INTRON	RBM17	ENSG00000134453.16	ENST00000379888.9:ENST00000437845.6:ENST00000432931.5:ENST00000446108.5	protein_coding	protein_coding	protein_coding	protein_coding	3	81	2	2.70586	4.17818	5.6505	9.14702e-4	2.70553e-4	0.027804	0.0150813
chr1	21764376	21764476	396682	0	-	0.56	(0.515,0.57]	chr1	47345	62	INTRON	INTRON	USP48	ENSG00000090686.16	ENST00000400301.5:ENST00000308271.14:ENST00000529637.5:ENST00000421625.6:ENST00000527823.5:ENST00000532737.1:ENST00000489108.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	98	2	2.74313	4.177835	5.61254	1.10757e-4	1.0436e-4	0.00945003	0.00863456
chr1	1766244	1766344	361614	0	-	0.51	(0.476,0.515]	chr1	42219	4	INTRON	INTRON	NADK	ENSG00000008130.15	ENST00000378625.5:ENST00000341991.7:ENST00000341426.9:ENST00000492845.6:ENST00000492768.5:ENST00000460602.5:ENST00000464373.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	24	2	4.13586	4.17775	4.21964	0.031846	0.0167715	0.13151	0.110511
chr1	7981596	7981695	16557	0	+	0.484848	(0.476,0.515]	chr1	1492	35	INTRON	INTRON	PARK7	ENSG00000116288.13	ENST00000493373.5:ENST00000493678.5:ENST00000377493.9:ENST00000338639.10:ENST00000377491.5:ENST00000377488.5:ENST00000469225.1	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	4.13586	4.17775	4.21964	0.031846	0.0167715	0.13151	0.110511
chr1	28929764	28929864	59108	0	+	0.51	(0.476,0.515]	chr1	7621	146	INTRON	INTRON	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000647918.1:ENST00000646800.1:ENST00000644342.1:ENST00000646189.1:ENST00000482464.6:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000646260.1:ENST00000373798.5:ENST00000644600.1:ENST00000649674.1:ENST00000643173.1:ENST00000343067.9:ENST00000644780.1:ENST00000650265.1:ENST00000648181.1:ENST00000643604.1:ENST00000648891.1:ENST00000373797.2:ENST00000349460.9:ENST00000645184.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	24	2	4.13586	4.17775	4.21964	0.031846	0.0167715	0.13151	0.110511
chr1	36041513	36041609	72271	0	+	0.479167	(0.476,0.515]	chr1	9234	7	INTRON	INTRON	AGO3	ENSG00000126070.20	ENST00000634486.1:ENST00000373191.9:ENST00000246314.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	24	2	4.13586	4.17775	4.21964	0.031846	0.0167715	0.13151	0.110511
chr10	12077376	12077475	4393457	0	+	0.515152	(0.476,0.515]	chr10	405238	78	INTRON	INTRON	DHTKD1	ENSG00000181192.12	ENST00000263035.9:ENST00000437298.1	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	4.13586	4.17775	4.21964	0.031846	0.0167715	0.13151	0.110511
chr12	100318425	100318524	5201045	0	+	0.494949	(0.476,0.515]	chr12	492183	1	INTRON	INTRON	SCYL2	ENSG00000136021.19	ENST00000549687.5:ENST00000360820.7:ENST00000635101.1:ENST00000550251.2:ENST00000553148.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	24	2	4.13586	4.17775	4.21964	0.031846	0.0167715	0.13151	0.110511
chr16	12200482	12200582	6293570	0	+	0.5	(0.476,0.515]	chr16	602445	4	INTRON	INTRON	SNX29	ENSG00000048471.14	ENST00000566228.6:ENST00000564791.5	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	4.13586	4.17775	4.21964	0.031846	0.0167715	0.13151	0.110511
chr16	81028944	81029041	6404049	0	+	0.505155	(0.476,0.515]	chr16	614920	4	UTR3	UTR3:EXON_MRNA:INTRON	CENPN	ENSG00000166451.14	ENST00000439957.7:ENST00000393335.7:ENST00000305850.10	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	4.13586	4.17775	4.21964	0.031846	0.0167715	0.13151	0.110511
chr17	21018502	21018583	6742917	0	-	0.481481	(0.476,0.515]	chr17	662046	3	SS3_PROX	SS3_PROX:INTRON	USP22	ENSG00000124422.12	ENST00000261497.9:ENST00000537526.6:ENST00000455117.6:ENST00000579645.5:ENST00000582335.1:ENST00000578446.1:ENST00000476111.5:ENST00000584538.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	24	2	4.13586	4.17775	4.21964	0.031846	0.0167715	0.13151	0.110511
chr17	35842659	35842759	6601436	0	+	0.34	(0.32,0.35]	chr17	642465	2	SS5_PROX	SS5_PROX:INTRON	TAF15	ENSG00000270647.7	ENST00000605844.6:ENST00000603777.6:ENST00000604694.2:ENST00000689923.1:ENST00000603393.6:ENST00000685897.1:ENST00000604841.5:ENST00000603067.6:ENST00000687618.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	81	2	2.3471	4.17775	6.0084	0.0156413	2.68752e-5	0.101393	0.00408175
chr19	38627802	38627902	7065625	0	+	0.49	(0.476,0.515]	chr19	705450	13	INTRON	INTRON	EIF3K	ENSG00000178982.10	ENST00000614624.4:ENST00000593149.5:ENST00000588934.5:ENST00000538434.5:ENST00000593062.5:ENST00000248342.9:ENST00000545173.6:ENST00000591409.5:ENST00000586513.4:ENST00000592558.1:ENST00000588299.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	24	2	4.13586	4.17775	4.21964	0.031846	0.0167715	0.13151	0.110511
chr19	47135705	47135805	7083917	0	+	0.48	(0.476,0.515]	chr19	708740	1	SS5_PROX	SS5_PROX:INTRON	SAE1	ENSG00000142230.13	ENST00000594144.5:ENST00000594526.5:ENST00000597808.5:ENST00000413379.7:ENST00000600706.5:ENST00000270225.12:ENST00000598840.5:ENST00000414294.6:ENST00000600753.1:ENST00000660039.1:ENST00000664120.1:ENST00000596995.1:ENST00000392776.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	24	2	4.13586	4.17775	4.21964	0.031846	0.0167715	0.13151	0.110511
chr2	131064672	131064771	1228803	0	-	0.50505	(0.476,0.515]	chr2	130981	86	INTRON	INTRON	FAM168B	ENSG00000152102.18	ENST00000389915.4:ENST00000409185.5	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	4.13586	4.17775	4.21964	0.031846	0.0167715	0.13151	0.110511
chr4	6931589	6931689	1922837	0	+	0.51	(0.476,0.515]	chr4	193062	71	INTRON	INTRON	TBC1D14	ENSG00000132405.19	ENST00000448507.5:ENST00000409757.9	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	4.13586	4.17775	4.21964	0.031846	0.0167715	0.13151	0.110511
chr4	25916220	25916320	1934948	0	+	0.5	(0.476,0.515]	chr4	194309	14	INTRON	INTRON	SMIM20	ENSG00000250317.9	ENST00000515764.2:ENST00000506197.3:ENST00000514384.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	24	2	4.13586	4.17775	4.21964	0.031846	0.0167715	0.13151	0.110511
chr5	119245643	119245737	2461557	0	+	0.489362	(0.476,0.515]	chr5	235831	7	INTRON	INTRON	DMXL1	ENSG00000172869.15	ENST00000539542.6:ENST00000311085.8:ENST00000505312.5:ENST00000514595.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	24	2	4.13586	4.17775	4.21964	0.031846	0.0167715	0.13151	0.110511
chr6	36466296	36466395	2854151	0	+	0.515152	(0.476,0.515]	chr6	269718	2	INTRON	INTRON	KCTD20	ENSG00000112078.14	ENST00000536244.5:ENST00000373731.7:ENST00000483557.5:ENST00000474988.5:ENST00000498267.5:ENST00000481911.5:ENST00000449081.6:ENST00000265344.8:ENST00000460983.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	24	2	4.13586	4.17775	4.21964	0.031846	0.0167715	0.13151	0.110511
chr6	125161020	125161120	2953217	0	+	0.5	(0.476,0.515]	chr6	277761	61	INTRON	INTRON	TPD52L1	ENSG00000111907.21	ENST00000534368.5:ENST00000304877.17:ENST00000368402.9:ENST00000368388.6:ENST00000534000.6:ENST00000527711.5:ENST00000392483.6:ENST00000528193.5:ENST00000532429.5:ENST00000532978.5:ENST00000534199.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	24	2	4.13586	4.17775	4.21964	0.031846	0.0167715	0.13151	0.110511
chr7	102001598	102001698	3368210	0	+	0.48	(0.476,0.515]	chr7	315233	416	INTRON	INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000497815.5:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000558469.5:ENST00000560541.5:ENST00000558836.5:ENST00000606749.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	24	2	4.13586	4.17775	4.21964	0.031846	0.0167715	0.13151	0.110511
chr8	143461616	143461716	4082240	0	-	0.51	(0.476,0.515]	chr8	370865	201	INTRON	INTRON	ZC3H3	ENSG00000014164.7	ENST00000262577.6	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	4.13586	4.17775	4.21964	0.031846	0.0167715	0.13151	0.110511
chr9	123210584	123210684	4339897	0	-	0.48	(0.476,0.515]	chr9	398947	259	INTRON	INTRON	STRBP	ENSG00000165209.19	ENST00000348403.10:ENST00000360998.3:ENST00000407982.6:ENST00000479114.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	24	2	4.13586	4.17775	4.21964	0.031846	0.0167715	0.13151	0.110511
chr9	137384768	137384867	4376840	0	-	0.515152	(0.476,0.515]	chr9	403535	10	INTRON	INTRON	EXD3	ENSG00000187609.16	ENST00000340951.9:ENST00000490886.5:ENST00000460390.6:ENST00000479452.5:ENST00000475006.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	24	2	4.13586	4.17775	4.21964	0.031846	0.0167715	0.13151	0.110511
chrX	48929218	48929317	7815785	0	-	0.50505	(0.476,0.515]	chrX	796844	28	INTRON	INTRON	OTUD5	ENSG00000068308.15	ENST00000376488.8:ENST00000396743.7:ENST00000455452.5:ENST00000156084.8:ENST00000428668.2:ENST00000484499.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	24	2	4.13586	4.17775	4.21964	0.031846	0.0167715	0.13151	0.110511
chrX	77947442	77947541	7685403	0	+	0.484848	(0.476,0.515]	chrX	786845	191	INTRON	INTRON	ENSG00000248503:ATP7A:PGK1	ENSG00000248503.3:ENSG00000165240.22:ENSG00000102144.15	ENST00000686088.1:ENST00000693051.1:ENST00000341514.11:ENST00000688746.1:ENST00000688338.1:ENST00000685264.1:ENST00000686515.1:ENST00000687086.1:ENST00000689530.1:ENST00000686999.1:ENST00000644362.1:ENST00000343533.10:ENST00000686543.1:ENST00000686033.1:ENST00000692908.1:ENST00000686688.1:ENST00000686480.1:ENST00000689649.1:ENST00000686416.1:ENST00000682742.2:ENST00000685434.1:ENST00000693387.1:ENST00000688249.1:ENST00000689891.1:ENST00000691152.1:ENST00000688889.1:ENST00000687984.1:ENST00000685208.1:ENST00000687599.1:ENST00000685885.1:ENST00000687082.1:ENST00000693167.1:ENST00000692729.1:ENST00000645454.1:ENST00000686896.1:ENST00000689731.1:ENST00000684798.1:ENST00000686560.1:ENST00000686464.1:ENST00000686050.1:ENST00000602791.2:ENST00000686133.1:ENST00000645094.1:ENST00000689541.1:ENST00000642651.1:ENST00000693398.1:ENST00000688165.1:ENST00000692110.1:ENST00000687325.1:ENST00000689767.1:ENST00000687628.1:ENST00000691456.1	protein_coding	protein_coding	protein_coding:transcribed_processed_pseudogene	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	24	2	4.13586	4.17775	4.21964	0.031846	0.0167715	0.13151	0.110511
chr5	160423100	160423198	2529294	0	+	0.44898	(0.44,0.476]	chr5	242012	2	SS5_PROX	SS5_PROX:INTRON	PTTG1	ENSG00000164611.13	ENST00000352433.10:ENST00000517480.1:ENST00000523659.5:ENST00000520452.5:ENST00000393964.1:ENST00000519287.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	67	2	2.86452	4.177745	5.49097	0.00159222	4.8612e-4	0.0367961	0.0203841
chr1	109378082	109378182	520821	0	-	0.49	(0.476,0.515]	chr1	61195	81	INTRON	INTRON	SORT1	ENSG00000134243.12	ENST00000538502.5:ENST00000256637.8:ENST00000493736.5:ENST00000482236.5:ENST00000633956.1:ENST00000471996.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	51	2	3.44784	4.177725	4.90761	0.00386428	0.00113238	0.0542786	0.0308465
chr19	48907277	48907376	7087841	0	+	0.515152	(0.476,0.515]	chr19	709343	10	INTRON	INTRON	NUCB1	ENSG00000104805.16	ENST00000405315.9:ENST00000407032.5:ENST00000452087.5:ENST00000485798.5:ENST00000424608.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	51	2	3.44784	4.177725	4.90761	0.00386428	0.00113238	0.0542786	0.0308465
chrX	124562968	124563061	7880976	0	-	0.247312	[0,0.28]	chrX	802721	8	INTRON	INTRON	TENM1	ENSG00000009694.13	ENST00000371130.7:ENST00000422452.2	protein_coding	protein_coding	protein_coding	protein_coding	2	84	2	2.52489	4.17769	5.83049	0.0084136	0.00112548	0.082518	0.0306963
chr13	95240904	95241003	5639268	0	-	0.444444	(0.44,0.476]	chr13	537157	57	INTRON	INTRON	ABCC4	ENSG00000125257.16	ENST00000645237.2:ENST00000643051.1:ENST00000643842.1:ENST00000646439.1:ENST00000643816.1:ENST00000536256.3:ENST00000643556.1:ENST00000629385.1:ENST00000642524.1:ENST00000645532.1:ENST00000644471.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	67	2	2.73781	4.177655	5.6175	0.00276493	2.84938e-4	0.04867	0.015495
chr9	127790215	127790311	4202126	0	+	0.427083	(0.408,0.44]	chr9	383811	8	UTR3	UTR3:EXON_MRNA	CDK9	ENSG00000136807.14	ENST00000373264.5	protein_coding	protein_coding	protein_coding	protein_coding	1	54	2	2.66579	4.177525	5.68926	0.019342	2.2853e-4	0.119831	0.0138641
chr2	10130740	10130837	690803	0	+	0.443299	(0.44,0.476]	chr2	81086	15	UTR3	UTR3:EXON_MRNA:INTRON	RRM2	ENSG00000171848.16	ENST00000641198.1:ENST00000360566.6:ENST00000652660.1:ENST00000641498.1:ENST00000304567.10:ENST00000615152.5:ENST00000646978.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	59	2	3.65135	4.17745	4.70355	0.00383786	6.34922e-4	0.0562562	0.023163
chr22	35400787	35400870	7508900	0	+	0.301205	(0.28,0.32]	chr22	766441	2	SS5_PROX	SS5_PROX:INTRON	MCM5	ENSG00000100297.16	ENST00000451351.5:ENST00000382011.9:ENST00000216122.9:ENST00000417343.1:ENST00000416905.1:ENST00000444778.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	65	2	3.2685	4.17736	5.08622	0.00432734	0.00227525	0.0579331	0.0437013
chr12	27734347	27734447	5099230	0	+	0.48	(0.476,0.515]	chr12	481823	83	INTRON	INTRON	MRPS35	ENSG00000061794.13	ENST00000536569.1:ENST00000081029.8:ENST00000538315.5:ENST00000542791.1:ENST00000542199.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	51	2	2.94692	4.177305	5.40769	0.00794331	6.23078e-4	0.0797304	0.0229151
chr17	35086241	35086341	6757934	0	-	0.52	(0.515,0.57]	chr17	664148	162	INTRON	INTRON	RFFL	ENSG00000092871.17	ENST00000315249.11:ENST00000584655.5:ENST00000447669.6:ENST00000584541.1:ENST00000414419.6:ENST00000581265.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	61	2	2.87626	4.177125	5.47799	0.00136224	2.09356e-4	0.0339121	0.0131276
chr2	39119935	39120035	1102327	0	-	0.54	(0.515,0.57]	chr2	118305	2	SS5_PROX	SS5_PROX:INTRON	SOS1	ENSG00000115904.15	ENST00000692089.1:ENST00000402219.8:ENST00000690876.1:ENST00000395038.6:ENST00000691229.1:ENST00000689668.1:ENST00000690679.1:ENST00000461545.2:ENST00000451331.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	61	2	2.82994	4.1770950000000004	5.52425	0.00168661	1.68822e-4	0.0381778	0.0119215
chr1	164702	164791	352956	0	-	0.449438	(0.44,0.476]	chr1	40816	6	EXON_LNCRNA	EXON_LNCRNA	ENSG00000241860	ENSG00000241860.7	ENST00000466557.6	lncRNA	lncRNA	lncRNA	lncRNA	2	69	2	2.44514	4.177075	5.90901	0.0087381	7.5486e-5	0.0845538	0.00777227
chr1	50810869	50810969	450761	0	-	0.54	(0.515,0.57]	chr1	54261	88	INTRON	INTRON	FAF1	ENSG00000185104.21	ENST00000396153.7:ENST00000487898.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	23	2	4.04086	4.17706	4.31326	0.0197045	0.0141817	0.120063	0.0959618
chr1	165829130	165829230	243764	0	+	0.55	(0.515,0.57]	chr1	29139	8	INTRON	INTRON	UCK2	ENSG00000143179.16	ENST00000367879.9:ENST00000642653.1	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	4.04086	4.17706	4.31326	0.0197045	0.0141817	0.120063	0.0959618
chr1	211333480	211333580	306358	0	+	0.55	(0.515,0.57]	chr1	35325	62	INTRON	INTRON	TRAF5	ENSG00000082512.15	ENST00000336184.6:ENST00000462410.5:ENST00000488428.1:ENST00000261464.10:ENST00000494355.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	23	2	4.04086	4.17706	4.31326	0.0197045	0.0141817	0.120063	0.0959618
chr10	92609809	92609909	4490850	0	+	0.54	(0.515,0.57]	chr10	413563	3	SS5_PROX	SS5_PROX:INTRON	KIF11	ENSG00000138160.7	ENST00000676757.1:ENST00000676647.1:ENST00000260731.5:ENST00000676621.1:ENST00000677720.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	23	2	4.04086	4.17706	4.31326	0.0197045	0.0141817	0.120063	0.0959618
chr11	61792058	61792157	4957315	0	-	0.535354	(0.515,0.57]	chr11	465942	7	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	TMEM258	ENSG00000134825.16	ENST00000537328.6:ENST00000535297.1:ENST00000257262.12:ENST00000545210.5:ENST00000541893.5:ENST00000543510.1:ENST00000540434.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	23	2	4.04086	4.17706	4.31326	0.0197045	0.0141817	0.120063	0.0959618
chr11	62797082	62797182	4961346	0	-	0.52	(0.515,0.57]	chr11	466905	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	NXF1	ENSG00000162231.14	ENST00000531709.6:ENST00000294172.7:ENST00000532297.5:ENST00000530875.5:ENST00000531872.5:ENST00000531579.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	23	2	4.04086	4.17706	4.31326	0.0197045	0.0141817	0.120063	0.0959618
chr16	30705404	30705502	6338710	0	+	0.561224	(0.515,0.57]	chr16	607729	7	INTRON	INTRON	SRCAP	ENSG00000080603.17	ENST00000262518.9	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	4.04086	4.17706	4.31326	0.0197045	0.0141817	0.120063	0.0959618
chr2	23923955	23924055	1080925	0	-	0.52	(0.515,0.57]	chr2	115373	276	INTRON	INTRON	ATAD2B	ENSG00000119778.15	ENST00000238789.10:ENST00000439915.1	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	4.04086	4.17706	4.31326	0.0197045	0.0141817	0.120063	0.0959618
chr2	85040988	85041087	820966	0	+	0.545455	(0.515,0.57]	chr2	91438	55	INTRON	INTRON	KCMF1	ENSG00000176407.18	ENST00000409785.9:ENST00000453448.1	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	4.04086	4.17706	4.31326	0.0197045	0.0141817	0.120063	0.0959618
chr4	84715683	84715783	2188694	0	-	0.56	(0.515,0.57]	chr4	215009	3	SS3_PROX	SS3_PROX:INTRON	WDFY3	ENSG00000163625.16	ENST00000295888.9:ENST00000514711.1	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	4.04086	4.17706	4.31326	0.0197045	0.0141817	0.120063	0.0959618
chr4	112630697	112630789	2228842	0	-	0.521739	(0.515,0.57]	chr4	218224	3	INTRON	INTRON	ZGRF1	ENSG00000138658.16	ENST00000445203.6:ENST00000505019.6:ENST00000473015.5:ENST00000309071.9:ENST00000264370.9:ENST00000514770.5:ENST00000503172.5:ENST00000502805.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	23	2	4.04086	4.17706	4.31326	0.0197045	0.0141817	0.120063	0.0959618
chr6	150219855	150219955	2997545	0	+	0.52	(0.515,0.57]	chr6	280455	26	INTRON	INTRON	PPP1R14C	ENSG00000198729.5	ENST00000361131.5	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	4.04086	4.17706	4.31326	0.0197045	0.0141817	0.120063	0.0959618
chr7	75928629	75928728	3339030	0	+	0.545455	(0.515,0.57]	chr7	310884	70	INTRON	INTRON	POR	ENSG00000127948.16	ENST00000453773.5:ENST00000439963.5:ENST00000448410.5:ENST00000461988.6:ENST00000471238.5:ENST00000421059.1:ENST00000394893.5:ENST00000412521.5:ENST00000414186.5:ENST00000432753.5:ENST00000449920.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	23	2	4.04086	4.17706	4.31326	0.0197045	0.0141817	0.120063	0.0959618
chr7	98940187	98940285	3359896	0	+	0.520408	(0.515,0.57]	chr7	313518	20	INTRON	INTRON	TRRAP	ENSG00000196367.14	ENST00000355540.7:ENST00000359863.8:ENST00000628380.2:ENST00000456197.2:ENST00000446306.7	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	4.04086	4.17706	4.31326	0.0197045	0.0141817	0.120063	0.0959618
chr7	106107553	106107653	3608159	0	-	0.52	(0.515,0.57]	chr7	336457	79	INTRON	INTRON	SYPL1	ENSG00000008282.9	ENST00000011473.6:ENST00000455385.7:ENST00000470347.1:ENST00000634737.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	23	2	4.04086	4.17706	4.31326	0.0197045	0.0141817	0.120063	0.0959618
chr7	148781091	148781191	3444525	0	+	0.55	(0.515,0.57]	chr7	321232	130	INTRON	INTRON	CUL1	ENSG00000055130.18	ENST00000409469.5:ENST00000662716.1:ENST00000665936.1:ENST00000663044.1:ENST00000602748.5:ENST00000663835.1:ENST00000655324.1:ENST00000662132.1:ENST00000325222.9:ENST00000656001.1:ENST00000666124.1:ENST00000671421.1:ENST00000671397.1:ENST00000662670.1:ENST00000660240.1:ENST00000660013.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	23	2	4.04086	4.17706	4.31326	0.0197045	0.0141817	0.120063	0.0959618
chr9	5820220	5820320	4231105	0	-	0.54	(0.515,0.57]	chr9	388958	68	INTRON	INTRON	ERMP1	ENSG00000099219.15	ENST00000688202.1:ENST00000689364.1:ENST00000690284.1:ENST00000689268.1:ENST00000487088.6:ENST00000689030.1:ENST00000688887.1:ENST00000693487.1:ENST00000462592.5:ENST00000689671.1:ENST00000686418.1:ENST00000692974.1:ENST00000691560.1:ENST00000684950.1:ENST00000214893.10:ENST00000685462.1:ENST00000339450.10:ENST00000690648.1:ENST00000689742.1:ENST00000688899.1:ENST00000691251.1:ENST00000689259.1:ENST00000690037.1:ENST00000693638.1:ENST00000489219.5:ENST00000475005.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	23	2	4.04086	4.17706	4.31326	0.0197045	0.0141817	0.120063	0.0959618
chrX	3911218	3911318	7747708	0	-	0.56	(0.515,0.57]	chrX	793160	46	INTRON	INTRON	ENSG00000285756	ENSG00000285756.2	ENST00000650538.1:ENST00000381106.4	lncRNA	lncRNA	lncRNA	lncRNA	0	23	2	4.04086	4.17706	4.31326	0.0197045	0.0141817	0.120063	0.0959618
chr1	171550440	171550540	253882	0	+	0.3	(0.28,0.32]	chr1	30191	2	SS5_PROX	SS5_PROX:INTRON	PRRC2C	ENSG00000117523.18	ENST00000647382.2:ENST00000367742.7:ENST00000338920.8:ENST00000426496.6:ENST00000495585.1	protein_coding	protein_coding	protein_coding	protein_coding	1	58	2	2.91832	4.17701	5.4357	0.0102484	0.00215368	0.089002	0.0417866
chr15	63634232	63634311	6198820	0	-	0.253165	[0,0.28]	chr15	591064	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HERC1	ENSG00000103657.14	ENST00000443617.7:ENST00000561436.1:ENST00000560897.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	62	2	3.09587	4.17701	5.25815	0.0066548	0.00651565	0.0735232	0.0703807
chr6	35678633	35678733	3087417	0	-	0.27	[0,0.28]	chr6	288789	354	INTRON	INTRON	FKBP5	ENSG00000096060.15	ENST00000536438.5:ENST00000539068.5:ENST00000357266.9:ENST00000542713.1	protein_coding	protein_coding	protein_coding	protein_coding	1	62	2	3.09587	4.17701	5.25815	0.0066548	0.00651565	0.0735232	0.0703807
chr3	9663468	9663567	1359909	0	+	0.363636	(0.35,0.378]	chr3	142860	7	INTRON	INTRON	MTMR14	ENSG00000163719.20	ENST00000353332.9:ENST00000420925.5:ENST00000447144.5:ENST00000296003.9:ENST00000430020.5:ENST00000351233.9:ENST00000416864.5:ENST00000437997.1:ENST00000449543.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	57	2	2.89003	4.176985	5.46394	0.0122391	2.60035e-4	0.0910127	0.014326
chr12	1719148	1719247	5064449	0	+	0.272727	[0,0.28]	chr12	477866	158	INTRON	INTRON	ADIPOR2	ENSG00000006831.10	ENST00000537545.1:ENST00000357103.5:ENST00000540974.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	62	2	3.00498	4.17694	5.3489	0.00876063	0.00514751	0.0846118	0.062965
chr14	49671566	49671664	5886337	0	-	0.428571	(0.408,0.44]	chr14	558602	16	INTRON	INTRON	POLE2	ENSG00000100479.13	ENST00000216367.10:ENST00000539565.6:ENST00000556584.5:ENST00000554396.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	75	2	2.95088	4.17648	5.40208	0.00142252	2.37882e-4	0.0340865	0.0136195
chr7	103148895	103148980	3592896	0	-	0.470588	(0.44,0.476]	chr7	335311	2	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	NAPEPLD	ENSG00000161048.12	ENST00000341533.8:ENST00000465647.6:ENST00000417955.5:ENST00000427257.5:ENST00000418294.1:ENST00000479761.1:ENST00000425379.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	81	2	2.73545	4.176475	5.6175	7.908e-4	2.84938e-4	0.0258324	0.015495
chr20	41095346	41095445	7274182	0	+	0.212121	[0,0.28]	chr20	739260	29	EXON_MRNA	EXON_MRNA:INTRON	TOP1	ENSG00000198900.7	ENST00000361337.3:ENST00000681113.1:ENST00000681058.1:ENST00000681392.1:ENST00000681884.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	101	2	2.40162	4.176445	5.95127	0.00511828	7.37141e-4	0.064713	0.02495
chr16	24773336	24773436	6329652	0	+	0.25	[0,0.28]	chr16	605945	146	INTRON	INTRON	TNRC6A	ENSG00000090905.19	ENST00000395799.8:ENST00000315183.11:ENST00000562829.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	85	2	2.8773	4.17622	5.47514	0.00354561	0.00226728	0.0529186	0.0437013
chrX	110016751	110016851	7700174	0	+	0.52	(0.515,0.57]	chrX	788130	122	INTRON	INTRON	TMEM164	ENSG00000157600.12	ENST00000372072.7:ENST00000471255.5:ENST00000372073.5:ENST00000372068.7:ENST00000288381.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	49	2	3.35609	4.17622	4.99635	0.00174131	8.06602e-4	0.0375363	0.0258804
chr1	19092318	19092418	385517	0	-	0.45	(0.44,0.476]	chr1	45645	1	SS5_PROX	SS5_PROX:INTRON	UBR4	ENSG00000127481.15	ENST00000375254.8:ENST00000375224.1	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	4.12843	4.1761800000000004	4.22393	0.0337192	0.0162322	0.134145	0.109464
chr1	51461350	51461450	453771	0	-	0.47	(0.44,0.476]	chr1	54408	2	SS3_PROX	SS3_PROX:INTRON	EPS15	ENSG00000085832.17	ENST00000371733.8:ENST00000371730.6:ENST00000371727.5:ENST00000464478.5:ENST00000471391.1:ENST00000465467.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	24	2	4.12843	4.1761800000000004	4.22393	0.0337192	0.0162322	0.134145	0.109464
chr1	75657472	75657572	490252	0	-	0.46	(0.44,0.476]	chr1	58159	146	INTRON	INTRON	ENSG00000230863	ENSG00000230863.3	ENST00000648424.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	0	24	2	4.12843	4.1761800000000004	4.22393	0.0337192	0.0162322	0.134145	0.109464
chr1	154234792	154234892	227670	0	+	0.47	(0.44,0.476]	chr1	26253	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	UBAP2L	ENSG00000143569.19	ENST00000343815.10:ENST00000271877.11:ENST00000613315.4:ENST00000441890.5:ENST00000412596.5:ENST00000368504.5:ENST00000428931.6:ENST00000437652.5:ENST00000456325.5:ENST00000361546.6	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	4.12843	4.1761800000000004	4.22393	0.0337192	0.0162322	0.134145	0.109464
chr1	228228424	228228524	331438	0	+	0.46	(0.44,0.476]	chr1	38260	33	INTRON	INTRON	OBSCN	ENSG00000154358.23	ENST00000570156.7:ENST00000680850.1:ENST00000284548.16:ENST00000422127.5:ENST00000636476.2:ENST00000662438.1:ENST00000366704.2:ENST00000668066.1	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	4.12843	4.1761800000000004	4.22393	0.0337192	0.0162322	0.134145	0.109464
chr14	77579509	77579609	5927774	0	-	0.47	(0.44,0.476]	chr14	563726	4	SS3_PROX	SS3_PROX:INTRON	SPTLC2	ENSG00000100596.8	ENST00000216484.7:ENST00000692906.1:ENST00000554901.1:ENST00000557566.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	24	2	4.12843	4.1761800000000004	4.22393	0.0337192	0.0162322	0.134145	0.109464
chr15	40697357	40697457	6003197	0	+	0.45	(0.44,0.476]	chr15	570996	11	INTRON	INTRON	RAD51	ENSG00000051180.17	ENST00000527860.5:ENST00000423169.6:ENST00000557850.5:ENST00000267868.8:ENST00000645673.2:ENST00000382643.7:ENST00000525066.5:ENST00000526763.6:ENST00000532743.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	24	2	4.12843	4.1761800000000004	4.22393	0.0337192	0.0162322	0.134145	0.109464
chr16	22491142	22491225	6322513	0	+	0.457831	(0.44,0.476]	chr16	605432	3	EXON_LNCRNA	EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SMG1P1:NPIPB5	ENSG00000237296.10:ENSG00000243716.11	ENST00000309865.11:ENST00000431681.5:ENST00000415654.5:ENST00000418592.1:ENST00000415833.6:ENST00000546168.5	protein_coding	protein_coding	protein_coding:transcribed_unprocessed_pseudogene	protein_coding:processed_transcript:transcribed_unprocessed_pseudogene	0	24	2	4.12843	4.1761800000000004	4.22393	0.0337192	0.0162322	0.134145	0.109464
chr2	46470965	46471065	769890	0	+	0.46	(0.44,0.476]	chr2	86881	292	INTRON	INTRON	ENSG00000284608	ENSG00000284608.1	ENST00000432241.5	lncRNA	lncRNA	lncRNA	lncRNA	0	24	2	4.12843	4.1761800000000004	4.22393	0.0337192	0.0162322	0.134145	0.109464
chr5	133967395	133967459	2725707	0	-	0.453125	(0.44,0.476]	chr5	256410	1	EXON_LNCRNA	EXON_LNCRNA:INTRON	C5orf15	ENSG00000113583.8	ENST00000231512.5:ENST00000507191.1:ENST00000509913.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	24	2	4.12843	4.1761800000000004	4.22393	0.0337192	0.0162322	0.134145	0.109464
chr5	140275172	140275271	2737272	0	-	0.454545	(0.44,0.476]	chr5	257797	123	INTRON	INTRON	PFDN1	ENSG00000113068.10	ENST00000261813.9:ENST00000514611.1:ENST00000510217.1:ENST00000512707.1:ENST00000524074.1:ENST00000512925.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	24	2	4.12843	4.1761800000000004	4.22393	0.0337192	0.0162322	0.134145	0.109464
chr6	28297619	28297706	2839970	0	+	0.471264	(0.44,0.476]	chr6	266654	3	SS3_PROX	SS3_PROX:INTRON	PGBD1	ENSG00000137338.6	ENST00000259883.3:ENST00000682144.1	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	4.12843	4.1761800000000004	4.22393	0.0337192	0.0162322	0.134145	0.109464
chr6	155306892	155306992	3251644	0	-	0.45	(0.44,0.476]	chr6	302127	35	INTRON	INTRON	TFB1M	ENSG00000029639.11	ENST00000367166.5:ENST00000470239.1:ENST00000475849.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	24	2	4.12843	4.1761800000000004	4.22393	0.0337192	0.0162322	0.134145	0.109464
chr7	6264581	6264681	3477304	0	-	0.45	(0.44,0.476]	chr7	325332	520	INTRON	INTRON	CYTH3	ENSG00000008256.16	ENST00000396741.3:ENST00000350796.8:ENST00000482460.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	24	2	4.12843	4.1761800000000004	4.22393	0.0337192	0.0162322	0.134145	0.109464
chrX	65730310	65730409	7671717	0	+	0.444444	(0.44,0.476]	chrX	785164	2	INTRON	INTRON	MSN	ENSG00000147065.17	ENST00000360270.7	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	4.12843	4.1761800000000004	4.22393	0.0337192	0.0162322	0.134145	0.109464
chrX	154743967	154744067	7915249	0	-	0.46	(0.44,0.476]	chrX	806107	273	INTRON	INTRON	GAB3	ENSG00000160219.12	ENST00000496390.5:ENST00000424127.3:ENST00000369575.7:ENST00000369568.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	24	2	4.12843	4.1761800000000004	4.22393	0.0337192	0.0162322	0.134145	0.109464
chr2	177244946	177245045	1275649	0	-	0.373737	(0.35,0.378]	chr2	134708	103	INTRON	INTRON	NFE2L2	ENSG00000116044.16	ENST00000397063.8:ENST00000464747.5:ENST00000397062.8:ENST00000446151.6:ENST00000449627.1:ENST00000448782.5:ENST00000430047.1:ENST00000586532.5:ENST00000421929.5:ENST00000423513.5:ENST00000588123.1:ENST00000477534.1:ENST00000462023.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	85	2	2.66007	4.17598	5.69189	0.00123668	3.71413e-4	0.0326427	0.0178698
chr15	66583547	66583647	6050796	0	+	0.44	(0.408,0.44]	chr15	576221	9	INTRON	INTRON	LINC01169	ENSG00000259471.1	ENST00000558797.1	lncRNA	lncRNA	lncRNA	lncRNA	1	55	2	3.28852	4.175975	5.06343	0.00287185	0.00101725	0.0474836	0.0293497
chr2	135503728	135503828	1233226	0	-	0.46	(0.44,0.476]	chr2	131237	1126	INTRON	INTRON	ZRANB3	ENSG00000121988.18	ENST00000264159.11:ENST00000401392.5:ENST00000536680.5:ENST00000403017.2:ENST00000452187.6:ENST00000492193.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	72	2	2.63508	4.175845	5.71661	0.00501007	5.13947e-5	0.0618077	0.00585477
chr12	55790692	55790792	5332553	0	-	0.4	(0.378,0.408]	chr12	509137	1	SS3_PROX	SS3_PROX:INTRON	SARNP	ENSG00000205323.9	ENST00000546604.5:ENST00000552884.5:ENST00000336133.8:ENST00000552080.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	52	2	3.47377	4.175695	4.87762	0.00553849	0.00103087	0.0648867	0.0294094
chr2	151823984	151824084	1243698	0	-	0.4	(0.378,0.408]	chr2	132064	84	INTRON	INTRON	ARL5A:ENSG00000283228	ENSG00000162980.17:ENSG00000283228.1	ENST00000446896.7:ENST00000295087.13:ENST00000636024.1:ENST00000637224.1:ENST00000458140.6:ENST00000428992.2:ENST00000637559.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	56	2	2.72993	4.175615	5.6213	0.0188736	9.58854e-5	0.108861	0.00822887
chr1	19225636	19225734	386948	0	-	0.438776	(0.408,0.44]	chr1	46163	17	INTRON	INTRON	EMC1	ENSG00000127463.16	ENST00000477853.6:ENST00000688219.1:ENST00000690732.1:ENST00000690451.1:ENST00000688667.1:ENST00000685099.1:ENST00000685594.1:ENST00000690823.1:ENST00000692207.1:ENST00000688332.1:ENST00000693007.1:ENST00000688918.1:ENST00000691945.1:ENST00000375199.7:ENST00000375208.7:ENST00000486405.2:ENST00000494770.7:ENST00000692400.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	25	2	3.83494	4.17549	4.51604	0.0411442	0.0137419	0.161534	0.0949306
chr12	53717979	53718076	5329585	0	-	0.412371	(0.408,0.44]	chr12	508479	12	INTRON	INTRON	CALCOCO1	ENSG00000012822.16	ENST00000262059.8:ENST00000550804.6:ENST00000430117.6:ENST00000548263.5:ENST00000549935.6:ENST00000552282.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	25	2	3.83494	4.17549	4.51604	0.0411442	0.0137419	0.161534	0.0949306
chr12	124846788	124846888	5446414	0	-	0.42	(0.408,0.44]	chr12	521285	287	INTRON	INTRON	SCARB1	ENSG00000073060.17	ENST00000339570.9:ENST00000261693.11:ENST00000679605.1:ENST00000681686.1:ENST00000680926.1:ENST00000680556.1:ENST00000680982.1:ENST00000680596.1:ENST00000415380.6:ENST00000681117.1:ENST00000538291.5:ENST00000546215.5:ENST00000535005.5:ENST00000539320.3:ENST00000545493.1:ENST00000541661.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	25	2	3.83494	4.17549	4.51604	0.0411442	0.0137419	0.161534	0.0949306
chr13	95288472	95288572	5639750	0	-	0.43	(0.408,0.44]	chr13	537181	187	INTRON	INTRON	ABCC4	ENSG00000125257.16	ENST00000645237.2:ENST00000643051.1:ENST00000643842.1:ENST00000646439.1:ENST00000643816.1:ENST00000536256.3:ENST00000643556.1:ENST00000629385.1:ENST00000642524.1:ENST00000645532.1:ENST00000644471.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	25	2	3.83494	4.17549	4.51604	0.0411442	0.0137419	0.161534	0.0949306
chr14	102609519	102609619	5822702	0	+	0.44	(0.408,0.44]	chr14	552490	158	INTRON	INTRON	RCOR1	ENSG00000089902.10	ENST00000262241.7	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	3.83494	4.17549	4.51604	0.0411442	0.0137419	0.161534	0.0949306
chr15	51087560	51087660	6024650	0	+	0.42	(0.408,0.44]	chr15	574193	495	INTRON	INTRON	MIR4713HG	ENSG00000259240.1	ENST00000559909.1	lncRNA	lncRNA	lncRNA	lncRNA	0	25	2	3.83494	4.17549	4.51604	0.0411442	0.0137419	0.161534	0.0949306
chr17	60296800	60296900	6804917	0	-	0.41	(0.408,0.44]	chr17	672348	16	INTRON	INTRON	USP32	ENSG00000170832.13	ENST00000300896.9:ENST00000590133.5:ENST00000589335.5:ENST00000393003.7:ENST00000588898.1	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	3.83494	4.17549	4.51604	0.0411442	0.0137419	0.161534	0.0949306
chr17	63779661	63779761	6661013	0	+	0.43	(0.408,0.44]	chr17	649943	41	INTRON	INTRON	DDX42	ENSG00000198231.14	ENST00000581135.5:ENST00000578681.5:ENST00000583590.5:ENST00000389924.7:ENST00000359353.9	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	3.83494	4.17549	4.51604	0.0411442	0.0137419	0.161534	0.0949306
chr19	17297245	17297344	7029733	0	+	0.414141	(0.408,0.44]	chr19	699944	40	INTRON	INTRON	MRPL34	ENSG00000130312.7	ENST00000595444.1:ENST00000600434.5	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	3.83494	4.17549	4.51604	0.0411442	0.0137419	0.161534	0.0949306
chr3	46928927	46929027	1679550	0	-	0.43	(0.408,0.44]	chr3	171425	30	INTRON	INTRON	CCDC12	ENSG00000160799.12	ENST00000425441.5:ENST00000683445.1:ENST00000292314.6:ENST00000605358.5:ENST00000488069.5:ENST00000603885.5:ENST00000446836.5:ENST00000494655.5:ENST00000604164.5:ENST00000604181.1:ENST00000605875.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	25	2	3.83494	4.17549	4.51604	0.0411442	0.0137419	0.161534	0.0949306
chr5	177152398	177152498	2553886	0	+	0.42	(0.408,0.44]	chr5	243927	151	INTRON	INTRON	NSD1	ENSG00000165671.22	ENST00000508896.6:ENST00000689549.1:ENST00000354179.9:ENST00000686993.1:ENST00000689326.1:ENST00000439151.7:ENST00000510954.6:ENST00000689345.1:ENST00000347982.9:ENST00000687453.1:ENST00000685206.1:ENST00000638627.3:ENST00000644863.2:ENST00000688613.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	25	2	3.83494	4.17549	4.51604	0.0411442	0.0137419	0.161534	0.0949306
chr6	97144334	97144433	3163357	0	-	0.414141	(0.408,0.44]	chr6	295025	23	UTR3	UTR3:EXON_MRNA	MMS22L	ENSG00000146263.12	ENST00000683635.1:ENST00000275053.8	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	3.83494	4.17549	4.51604	0.0411442	0.0137419	0.161534	0.0949306
chr16	28202895	28202995	6468375	0	-	0.37	(0.35,0.378]	chr16	624597	215	INTRON	INTRON	XPO6	ENSG00000169180.12	ENST00000304658.10:ENST00000565698.5:ENST00000569951.1:ENST00000566073.1	protein_coding	protein_coding	protein_coding	protein_coding	1	53	2	3.36514	4.175375	4.98561	0.00474226	0.00173699	0.0600445	0.03851
chr17	75178087	75178186	6836331	0	-	0.454545	(0.44,0.476]	chr17	675507	29	INTRON	INTRON	SUMO2	ENSG00000188612.12	ENST00000420826.7:ENST00000314523.7:ENST00000578238.2	protein_coding	protein_coding	protein_coding	protein_coding	2	67	2	2.9044	4.1753	5.4462	0.00132926	5.83686e-4	0.0335085	0.0223753
chr11	118497369	118497463	4872759	0	+	0.404255	(0.378,0.408]	chr11	455091	7	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	KMT2A	ENSG00000118058.24	ENST00000389506.10:ENST00000534358.8:ENST00000691053.1:ENST00000649699.1:ENST00000528278.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	204	2	4.0828	4.17523	4.26766	4.27981e-6	4.38196e-7	0.00151054	3.47626e-4
chr5	154860470	154860567	2527694	0	+	0.484536	(0.476,0.515]	chr5	241732	2	INTRON	INTRON	CNOT8	ENSG00000155508.14	ENST00000521174.5:ENST00000523698.5:ENST00000517876.5:ENST00000520472.5:ENST00000519211.5:ENST00000522458.5:ENST00000403027.6:ENST00000521450.5:ENST00000519903.5:ENST00000517568.5:ENST00000524105.5:ENST00000519430.5:ENST00000285896.11:ENST00000521583.5:ENST00000520671.5:ENST00000518028.5:ENST00000519404.5:ENST00000521729.5:ENST00000519394.5:ENST00000518775.5:ENST00000522644.5:ENST00000521402.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	67	2	2.72507	4.175145	5.62522	0.0029369	2.4907e-4	0.0496505	0.0145812
chr17	28607668	28607766	6744725	0	-	0.5	(0.476,0.515]	chr17	662481	21	INTRON	INTRON	RSKR	ENSG00000167524.16	ENST00000577790.2:ENST00000584196.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	4	198	2	3.7764	4.17492	4.57344	2.01179e-5	4.13185e-8	0.00363316	8.25193e-5
chr10	48328262	48328362	4431205	0	+	0.23	[0,0.28]	chr10	408569	19	INTRON	INTRON	MAPK8	ENSG00000107643.17	ENST00000395611.7:ENST00000432379.5:ENST00000374189.6:ENST00000429041.6:ENST00000374179.8:ENST00000426557.5:ENST00000476134.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	84	2	2.48813	4.1748899999999995	5.86165	0.00953591	0.00101071	0.0863913	0.0291154
chr18	9201729	9201827	6869585	0	+	0.244898	[0,0.28]	chr18	680581	7	INTRON	INTRON	ANKRD12	ENSG00000101745.17	ENST00000262126.9:ENST00000540578.6:ENST00000581635.5:ENST00000400020.7:ENST00000581758.1:ENST00000546007.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	62	2	2.95729	4.174755	5.39222	0.0101824	0.00453865	0.089002	0.0595107
chr1	10506273	10506373	23290	0	+	0.49	(0.476,0.515]	chr1	2503	106	INTRON	INTRON	PEX14	ENSG00000142655.13	ENST00000472851.1:ENST00000356607.9:ENST00000491661.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	52	2	2.80729	4.174695	5.5421	0.0126008	3.56777e-4	0.0980703	0.0175154
chr19	45513168	45513268	7080256	0	+	0.49	(0.476,0.515]	chr19	708213	50	INTRON	INTRON	VASP	ENSG00000125753.14	ENST00000589627.1:ENST00000245932.11:ENST00000592139.1:ENST00000590603.1:ENST00000586014.5:ENST00000586619.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	52	2	2.80729	4.174695	5.5421	0.0126008	3.56777e-4	0.0980703	0.0175154
chr5	864376	864467	2564317	0	-	0.340659	(0.32,0.35]	chr5	245430	8	UTR3	UTR3:EXON_MRNA:INTRON	BRD9	ENSG00000028310.18	ENST00000493082.5:ENST00000467963.6:ENST00000495265.5:ENST00000490814.6:ENST00000495794.5:ENST00000483234.5:ENST00000497410.5:ENST00000489816.5:ENST00000483173.5:ENST00000519112.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	126	2	2.16291	4.17462	6.18633	0.00452463	1.03016e-5	0.0595107	0.00235018
chr1	150335541	150335641	221493	0	+	0.54	(0.515,0.57]	chr1	24995	3	SS5_PROX	SS5_PROX:INTRON	PRPF3	ENSG00000117360.13	ENST00000324862.7:ENST00000467329.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	64	2	3.30664	4.174445	5.04225	0.00131841	1.4883e-4	0.0331539	0.0105921
chr2	71361044	71361144	807307	0	+	0.52	(0.515,0.57]	chr2	90154	49	INTRON	INTRON	ZNF638	ENSG00000075292.19	ENST00000494621.5:ENST00000410075.5:ENST00000466975.5:ENST00000466330.5:ENST00000464375.5:ENST00000475743.1:ENST00000409544.5:ENST00000264447.9	protein_coding	protein_coding	protein_coding	protein_coding	1	46	2	3.12663	4.17402	5.22141	0.00374498	6.44141e-4	0.0562234	0.0231685
chr8	143314539	143314637	4081506	0	-	0.418367	(0.408,0.44]	chr8	370722	40	INTRON	INTRON	TOP1MT	ENSG00000184428.13	ENST00000519977.5:ENST00000329245.9:ENST00000521193.5:ENST00000519148.5:ENST00000523676.5	protein_coding	protein_coding	protein_coding	protein_coding	1	52	2	2.82042	4.174	5.52758	0.0120121	4.54953e-4	0.0962115	0.0196892
chr4	77161071	77161148	1977127	0	+	0.311688	(0.28,0.32]	chr4	198251	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CCNG2	ENSG00000138764.15	ENST00000316355.10:ENST00000502280.5:ENST00000497512.5:ENST00000395640.5:ENST00000509972.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	60	2	3.54514	4.173845	4.80255	0.0137406	0.00100603	0.0949306	0.0292285
chr1	738202	738301	357345	0	-	0.313131	(0.28,0.32]	chr1	41146	22	INTRON	INTRON	ENSG00000230021:ENSG00000228327	ENSG00000230021.10:ENSG00000228327.4	ENST00000634337.2:ENST00000635509.2:ENST00000506640.2	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene:transcribed_unprocessed_pseudogene	processed_transcript	0	26	2	4.01002	4.173835	4.33765	0.0434868	0.039714	0.162255	0.143072
chr1	246984928	246985027	682365	0	-	0.313131	(0.28,0.32]	chr1	80073	46	INTRON	INTRON	ZNF670-ZNF695:ZNF695	ENSG00000135747.11:ENSG00000197472.15	ENST00000465049.6:ENST00000479214.5:ENST00000366504.6:ENST00000491337.6:ENST00000487338.6:ENST00000498046.2:ENST00000474541.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	26	2	4.01002	4.173835	4.33765	0.0434868	0.039714	0.162255	0.143072
chr10	5736739	5736838	4384883	0	+	0.313131	(0.28,0.32]	chr10	404545	8	INTRON	INTRON	TASOR2	ENSG00000108021.21	ENST00000695832.1:ENST00000328090.9:ENST00000695737.1:ENST00000695833.1:ENST00000695834.1:ENST00000695835.1:ENST00000695836.1:ENST00000645567.1:ENST00000380270.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	26	2	4.01002	4.173835	4.33765	0.0434868	0.039714	0.162255	0.143072
chr10	11607263	11607363	4556026	0	-	0.32	(0.28,0.32]	chr10	420468	92	INTRON	INTRON	USP6NL	ENSG00000148429.15	ENST00000609104.6:ENST00000606752.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	26	2	4.01002	4.173835	4.33765	0.0434868	0.039714	0.162255	0.143072
chr11	9426653	9426752	4729851	0	+	0.313131	(0.28,0.32]	chr11	437895	10	INTRON	INTRON	IPO7	ENSG00000205339.10	ENST00000379719.8	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.01002	4.173835	4.33765	0.0434868	0.039714	0.162255	0.143072
chr13	45178593	45178693	5478859	0	+	0.3	(0.28,0.32]	chr13	524950	264	INTRON	INTRON	GTF2F2	ENSG00000188342.12	ENST00000340473.8	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.01002	4.173835	4.33765	0.0434868	0.039714	0.162255	0.143072
chr13	96012306	96012406	5642038	0	-	0.31	(0.28,0.32]	chr13	537403	126	INTRON	INTRON	UGGT2	ENSG00000102595.21	ENST00000376747.8:ENST00000465196.5:ENST00000376714.7:ENST00000397618.7:ENST00000467305.1:ENST00000376712.4:ENST00000621375.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	26	2	4.01002	4.173835	4.33765	0.0434868	0.039714	0.162255	0.143072
chr14	67384928	67385027	5765005	0	+	0.292929	(0.28,0.32]	chr14	546948	16	UTR3	UTR3:EXON_MRNA	EIF2S1	ENSG00000134001.15	ENST00000256383.11	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.01002	4.173835	4.33765	0.0434868	0.039714	0.162255	0.143072
chr15	59662098	59662197	6194504	0	-	0.313131	(0.28,0.32]	chr15	590172	31	UTR3	UTR3:EXON_MRNA:INTRON	ENSG00000227161:BNIP2	ENSG00000227161.1:ENSG00000140299.13	ENST00000441746.1:ENST00000267859.8:ENST00000607373.6	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	0	26	2	4.01002	4.173835	4.33765	0.0434868	0.039714	0.162255	0.143072
chr17	28097828	28097928	6583073	0	+	0.32	(0.28,0.32]	chr17	639837	359	INTRON	INTRON	NLK	ENSG00000087095.13	ENST00000407008.8:ENST00000496808.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	26	2	4.01002	4.173835	4.33765	0.0434868	0.039714	0.162255	0.143072
chr17	39397265	39397364	6766609	0	-	0.313131	(0.28,0.32]	chr17	665497	537	INTRON	INTRON	FBXL20	ENSG00000108306.13	ENST00000264658.11:ENST00000583610.5:ENST00000394294.7:ENST00000577399.5:ENST00000647139.1	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.01002	4.173835	4.33765	0.0434868	0.039714	0.162255	0.143072
chr18	46883098	46883197	6966389	0	-	0.282828	(0.28,0.32]	chr18	689510	185	INTRON	INTRON	PIAS2	ENSG00000078043.16	ENST00000585916.6:ENST00000398654.7:ENST00000324794.11:ENST00000545673.5:ENST00000592212.5:ENST00000590127.5:ENST00000592011.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	26	2	4.01002	4.173835	4.33765	0.0434868	0.039714	0.162255	0.143072
chr2	55250422	55250519	1122820	0	-	0.319588	(0.28,0.32]	chr2	120350	5	INTRON	INTRON	MTIF2	ENSG00000085760.15	ENST00000403721.5:ENST00000263629.9:ENST00000394600.7	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.01002	4.173835	4.33765	0.0434868	0.039714	0.162255	0.143072
chr22	45737645	45737742	7531149	0	+	0.298969	(0.28,0.32]	chr22	770062	29	INTRON	INTRON	ATXN10	ENSG00000130638.17	ENST00000381061.8:ENST00000252934.10:ENST00000640901.1:ENST00000476998.5:ENST00000483549.5:ENST00000435026.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	26	2	4.01002	4.173835	4.33765	0.0434868	0.039714	0.162255	0.143072
chr3	194479609	194479708	1891127	0	-	0.292929	(0.28,0.32]	chr3	189246	115	INTRON	INTRON	ATP13A3	ENSG00000133657.17	ENST00000687055.1:ENST00000645538.1:ENST00000645319.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	26	2	4.01002	4.173835	4.33765	0.0434868	0.039714	0.162255	0.143072
chr4	83003905	83004005	2181181	0	-	0.29	(0.28,0.32]	chr4	214521	187	INTRON	INTRON	LIN54	ENSG00000189308.11	ENST00000340417.8:ENST00000510877.5:ENST00000446851.6:ENST00000442461.6:ENST00000510557.5:ENST00000508171.5:ENST00000506560.5:ENST00000505397.1:ENST00000509748.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	26	2	4.01002	4.173835	4.33765	0.0434868	0.039714	0.162255	0.143072
chr5	143368602	143368702	2742179	0	-	0.32	(0.28,0.32]	chr5	258577	541	INTRON	INTRON	NR3C1	ENSG00000113580.15	ENST00000343796.6:ENST00000394464.7:ENST00000415690.6:ENST00000424646.6:ENST00000504572.5:ENST00000394466.6:ENST00000231509.7:ENST00000652686.1:ENST00000503201.1:ENST00000504336.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	26	2	4.01002	4.173835	4.33765	0.0434868	0.039714	0.162255	0.143072
chr6	53288442	53288538	3107577	0	-	0.302083	(0.28,0.32]	chr6	291020	1	INTRON	INTRON	ELOVL5	ENSG00000012660.14	ENST00000370918.8:ENST00000542638.5:ENST00000304434.11:ENST00000485336.5:ENST00000465983.5:ENST00000486973.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	26	2	4.01002	4.173835	4.33765	0.0434868	0.039714	0.162255	0.143072
chr6	170545210	170545308	3267596	0	-	0.316327	(0.28,0.32]	chr6	303373	11	INTRON	INTRON	PSMB1	ENSG00000008018.9	ENST00000262193.7:ENST00000462957.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	26	2	4.01002	4.173835	4.33765	0.0434868	0.039714	0.162255	0.143072
chr9	5006387	5006487	4096034	0	+	0.31	(0.28,0.32]	chr9	373235	200	INTRON	INTRON	JAK2	ENSG00000096968.14	ENST00000636127.1:ENST00000476574.5:ENST00000381652.4	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.01002	4.173835	4.33765	0.0434868	0.039714	0.162255	0.143072
chrX	110056808	110056908	7700575	0	+	0.3	(0.28,0.32]	chrX	788130	523	INTRON	INTRON	TMEM164	ENSG00000157600.12	ENST00000372072.7:ENST00000471255.5:ENST00000372073.5:ENST00000372068.7:ENST00000288381.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	26	2	4.01002	4.173835	4.33765	0.0434868	0.039714	0.162255	0.143072
chr1	2193164	2193259	362939	0	-	0.305263	(0.28,0.32]	chr1	42342	3	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	FAAP20	ENSG00000162585.17	ENST00000400919.7:ENST00000469733.5:ENST00000414253.5:ENST00000428120.5:ENST00000400918.7:ENST00000497675.2:ENST00000487186.5:ENST00000401813.7:ENST00000378546.9:ENST00000378543.2:ENST00000476803.1:ENST00000440825.6:ENST00000420515.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	63	2	3.04485	4.17369	5.30253	0.00894006	0.0010319	0.0799922	0.0294094
chr11	32915890	32915990	4764942	0	+	0.37	(0.35,0.378]	chr11	440609	222	INTRON	INTRON	QSER1	ENSG00000060749.16	ENST00000650167.2:ENST00000399302.7:ENST00000527250.5	protein_coding	protein_coding	protein_coding	protein_coding	2	77	2	2.66568	4.173665	5.68165	0.00496487	9.36553e-5	0.0615009	0.00811835
chr6	36453279	36453378	2854020	0	+	0.40404	(0.378,0.408]	chr6	269712	2	INTRON	INTRON	KCTD20	ENSG00000112078.14	ENST00000536244.5:ENST00000373731.7:ENST00000483557.5:ENST00000474988.5:ENST00000498267.5:ENST00000481911.5:ENST00000449081.6:ENST00000265344.8:ENST00000460983.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	51	2	3.22599	4.173635	5.12128	0.00288652	0.00251746	0.0494641	0.0446195
chr7	4720247	4720347	3270295	0	+	0.39	(0.378,0.408]	chr7	303884	370	INTRON	INTRON	FOXK1	ENSG00000164916.11	ENST00000328914.5	protein_coding	protein_coding	protein_coding	protein_coding	1	51	2	3.22599	4.173635	5.12128	0.00288652	0.00251746	0.0494641	0.0446195
chr14	77909077	77909177	5801237	0	+	0.46	(0.44,0.476]	chr14	549558	3	INTRON	INTRON	ADCK1	ENSG00000063761.16	ENST00000238561.10:ENST00000393639.8:ENST00000557501.5:ENST00000341211.5:ENST00000555333.1:ENST00000556560.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	54	2	3.22192	4.173525	5.12513	0.00360821	7.96486e-4	0.0533855	0.0258804
chr8	30589257	30589357	3931528	0	-	0.45	(0.44,0.476]	chr8	360124	37	INTRON	INTRON	GTF2E2	ENSG00000197265.9	ENST00000355904.9:ENST00000522833.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	54	2	3.22192	4.173525	5.12513	0.00360821	7.96486e-4	0.0533855	0.0258804
chr1	52456239	52456339	457570	0	-	0.49	(0.476,0.515]	chr1	54977	92	INTRON	INTRON	TUT4	ENSG00000134744.14	ENST00000371544.7:ENST00000257177.9:ENST00000469810.1:ENST00000528642.5:ENST00000497120.1:ENST00000484723.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	24	2	4.01777	4.17346	4.32915	0.0411361	0.0124637	0.1451	0.0973643
chr1	145615633	145615733	210058	0	+	0.5	(0.476,0.515]	chr1	22938	30	INTRON	INTRON	GPR89A	ENSG00000117262.19	ENST00000313835.14:ENST00000460277.5:ENST00000532574.5:ENST00000528944.5:ENST00000466593.5:ENST00000534502.5:ENST00000524525.5:ENST00000462900.2:ENST00000527989.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	24	2	4.01777	4.17346	4.32915	0.0411361	0.0124637	0.1451	0.0973643
chr10	102255120	102255220	4512736	0	+	0.5	(0.476,0.515]	chr10	415679	89	INTRON	INTRON	GBF1	ENSG00000107862.7	ENST00000676513.1:ENST00000676939.1:ENST00000677439.1:ENST00000677240.1:ENST00000677618.1:ENST00000679155.1:ENST00000679280.1:ENST00000678036.1:ENST00000678476.1:ENST00000678504.1:ENST00000677247.1:ENST00000677655.1:ENST00000678351.1:ENST00000679238.1:ENST00000677487.1:ENST00000677506.1:ENST00000678666.1:ENST00000676560.1:ENST00000678767.1:ENST00000677947.1:ENST00000673650.1:ENST00000674034.1:ENST00000369983.5:ENST00000679003.1:ENST00000678486.1:ENST00000676682.1:ENST00000676807.1:ENST00000676993.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	24	2	4.01777	4.17346	4.32915	0.0411361	0.0124637	0.1451	0.0973643
chr12	123232477	123232574	5444063	0	-	0.505155	(0.476,0.515]	chr12	520885	16	INTRON	INTRON	MPHOSPH9	ENSG00000051825.15	ENST00000606320.6:ENST00000545556.6:ENST00000537854.5:ENST00000539639.5:ENST00000541437.5:ENST00000538169.5:ENST00000535049.5:ENST00000545406.1:ENST00000369865.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	24	2	4.01777	4.17346	4.32915	0.0411361	0.0124637	0.1451	0.0973643
chr15	66647079	66647178	6051432	0	+	0.494949	(0.476,0.515]	chr15	576221	645	INTRON	INTRON	LINC01169	ENSG00000259471.1	ENST00000558797.1	lncRNA	lncRNA	lncRNA	lncRNA	0	24	2	4.01777	4.17346	4.32915	0.0411361	0.0124637	0.1451	0.0973643
chr16	75641163	75641263	6530198	0	-	0.48	(0.476,0.515]	chr16	632590	2	SS5_PROX	SS5_PROX:INTRON	KARS1	ENSG00000065427.15	ENST00000319410.9:ENST00000302445.8:ENST00000568378.5:ENST00000564578.5:ENST00000562875.5:ENST00000566560.5:ENST00000566249.5:ENST00000568682.5:ENST00000570215.1:ENST00000565738.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	24	2	4.01777	4.17346	4.32915	0.0411361	0.0124637	0.1451	0.0973643
chr18	12417334	12417433	6875237	0	+	0.484848	(0.476,0.515]	chr18	681138	61	INTRON	INTRON	PRELID3A	ENSG00000141391.14	ENST00000336990.8:ENST00000590956.5:ENST00000440960.6:ENST00000588729.5:ENST00000589565.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	24	2	4.01777	4.17346	4.32915	0.0411361	0.0124637	0.1451	0.0973643
chr18	62762414	62762514	6923034	0	+	0.49	(0.476,0.515]	chr18	685172	448	INTRON	INTRON	PHLPP1	ENSG00000081913.14	ENST00000262719.10	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	4.01777	4.17346	4.32915	0.0411361	0.0124637	0.1451	0.0973643
chr2	39428993	39429093	1104218	0	-	0.5	(0.476,0.515]	chr2	118511	493	INTRON	INTRON	MAP4K3	ENSG00000011566.15	ENST00000263881.8:ENST00000341681.9:ENST00000429397.5:ENST00000437968.1:ENST00000484274.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	24	2	4.01777	4.17346	4.32915	0.0411361	0.0124637	0.1451	0.0973643
chr22	41635612	41635712	7524329	0	+	0.51	(0.476,0.515]	chr22	769069	1	SS3_PROX	SS3_PROX:INTRON	XRCC6	ENSG00000196419.13	ENST00000428575.6:ENST00000402580.7:ENST00000360079.8:ENST00000359308.8:ENST00000405878.5:ENST00000405506.2	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	4.01777	4.17346	4.32915	0.0411361	0.0124637	0.1451	0.0973643
chr3	44474201	44474301	1676695	0	-	0.5	(0.476,0.515]	chr3	171144	155	INTRON	INTRON	ZNF445	ENSG00000185219.18	ENST00000396077.8:ENST00000474600.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	24	2	4.01777	4.17346	4.32915	0.0411361	0.0124637	0.1451	0.0973643
chr5	54215714	54215814	2619969	0	-	0.51	(0.476,0.515]	chr5	248860	434	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2:ENST00000505630.5:ENST00000505383.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	24	2	4.01777	4.17346	4.32915	0.0411361	0.0124637	0.1451	0.0973643
chr5	80419234	80419333	2399641	0	+	0.515152	(0.476,0.515]	chr5	231782	71	INTRON	INTRON	ZFYVE16	ENSG00000039319.17	ENST00000338008.9:ENST00000510158.5:ENST00000512558.5:ENST00000505560.5:ENST00000509562.2:ENST00000510995.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	24	2	4.01777	4.17346	4.32915	0.0411361	0.0124637	0.1451	0.0973643
chr7	72935596	72935696	3330361	0	+	0.5	(0.476,0.515]	chr7	309600	51	INTRON	INTRON	POM121	ENSG00000196313.13	ENST00000627934.3:ENST00000395270.5:ENST00000434423.5	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	4.01777	4.17346	4.32915	0.0411361	0.0124637	0.1451	0.0973643
chr9	34014625	34014725	4245505	0	-	0.48	(0.476,0.515]	chr9	390484	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	UBAP2	ENSG00000137073.24	ENST00000379238.7:ENST00000683659.1:ENST00000682239.1:ENST00000683140.1:ENST00000682209.1:ENST00000681980.1:ENST00000360802.6:ENST00000683252.1:ENST00000684158.1:ENST00000682914.1:ENST00000683717.1:ENST00000379239.9:ENST00000683084.1:ENST00000684754.1:ENST00000629575.2:ENST00000684298.1:ENST00000412543.6:ENST00000480885.5:ENST00000459988.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	24	2	4.01777	4.17346	4.32915	0.0411361	0.0124637	0.1451	0.0973643
chr9	68722206	68722306	4134227	0	+	0.48	(0.476,0.515]	chr9	376857	142	INTRON	INTRON	PIP5K1B	ENSG00000107242.20	ENST00000265382.8:ENST00000541509.5:ENST00000472907.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	24	2	4.01777	4.17346	4.32915	0.0411361	0.0124637	0.1451	0.0973643
chrX	134379569	134379665	7723561	0	+	0.479167	(0.476,0.515]	chrX	790091	11	INTRON	INTRON	PHF6	ENSG00000156531.18	ENST00000685047.1:ENST00000687496.1:ENST00000685553.1:ENST00000625464.2:ENST00000370803.8:ENST00000332070.7:ENST00000370799.5:ENST00000691812.1:ENST00000688598.1:ENST00000693759.1:ENST00000687834.1:ENST00000370800.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	24	2	4.01777	4.17346	4.32915	0.0411361	0.0124637	0.1451	0.0973643
chr4	153363025	153363125	2066722	0	+	0.45	(0.44,0.476]	chr4	204524	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	MND1	ENSG00000121211.8	ENST00000622785.4:ENST00000509752.5:ENST00000240488.8:ENST00000508731.5:ENST00000504860.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	50	2	3.2029	4.17334	5.14378	0.00308681	0.00184943	0.0510391	0.0388609
chr5	151803782	151803861	2522147	0	+	0.43038	(0.408,0.44]	chr5	241370	3	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	G3BP1	ENSG00000145907.16	ENST00000678070.1:ENST00000678964.1:ENST00000678925.1:ENST00000394123.7:ENST00000676978.1:ENST00000679289.1:ENST00000677493.1:ENST00000676644.1:ENST00000677757.1:ENST00000522761.6:ENST00000676827.1:ENST00000520177.6:ENST00000676634.1:ENST00000678854.1:ENST00000676911.1:ENST00000356245.8:ENST00000678646.1:ENST00000677381.1:ENST00000678904.1:ENST00000678910.1:ENST00000678101.1:ENST00000677105.1:ENST00000678369.1:ENST00000678564.1:ENST00000677923.1:ENST00000677323.1:ENST00000677687.1:ENST00000679193.1:ENST00000678825.1:ENST00000678657.1:ENST00000676507.1:ENST00000678612.1:ENST00000676715.1:ENST00000676899.1:ENST00000677658.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	57	2	3.48793	4.173325	4.85872	0.00221911	0.00130904	0.0435144	0.0331539
chr6	37843903	37844003	2857274	0	+	0.44	(0.408,0.44]	chr6	270225	235	INTRON	INTRON	ZFAND3	ENSG00000156639.12	ENST00000287218.9:ENST00000373391.6:ENST00000474522.5	protein_coding	protein_coding	protein_coding	protein_coding	5	103	2	2.41161	4.173195	5.93478	8.34334e-4	7.42058e-5	0.0263691	0.00770735
chr1	16450440	16450540	36189	0	+	0.42	(0.408,0.44]	chr1	4420	3	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	NECAP2	ENSG00000157191.20	ENST00000504551.6:ENST00000337132.10:ENST00000457722.6:ENST00000443980.6:ENST00000504858.5:ENST00000492095.5:ENST00000459640.5:ENST00000496239.5:ENST00000513161.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	24	2	4.12187	4.173170000000001	4.22447	0.0354689	0.0161655	0.137535	0.109464
chr1	33023072	33023168	416717	0	-	0.4375	(0.408,0.44]	chr1	50345	10	INTRON	INTRON	AK2	ENSG00000004455.18	ENST00000373449.7:ENST00000672715.1:ENST00000695598.1:ENST00000550338.6:ENST00000695599.1:ENST00000354858.11:ENST00000695600.1:ENST00000695601.1:ENST00000491241.2:ENST00000695602.1:ENST00000469238.2:ENST00000695603.1:ENST00000695604.1:ENST00000672308.1:ENST00000548033.5:ENST00000467905.5:ENST00000480134.5:ENST00000695605.1:ENST00000673291.1:ENST00000487289.1:ENST00000548559.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	24	2	4.12187	4.173170000000001	4.22447	0.0354689	0.0161655	0.137535	0.109464
chr1	197186795	197186894	614053	0	-	0.424242	(0.408,0.44]	chr1	72731	53	INTRON	INTRON	ZBTB41	ENSG00000177888.8	ENST00000367405.5:ENST00000467322.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	24	2	4.12187	4.173170000000001	4.22447	0.0354689	0.0161655	0.137535	0.109464
chr10	7178657	7178757	4550594	0	-	0.42	(0.408,0.44]	chr10	420158	21	INTRON	INTRON	SFMBT2	ENSG00000198879.13	ENST00000397167.6:ENST00000361972.8:ENST00000684547.1:ENST00000683762.1:ENST00000673876.1:ENST00000682896.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	24	2	4.12187	4.173170000000001	4.22447	0.0354689	0.0161655	0.137535	0.109464
chr10	70156298	70156395	4640740	0	-	0.42268	(0.408,0.44]	chr10	426880	8	INTRON	INTRON	SAR1A	ENSG00000079332.15	ENST00000373242.6:ENST00000373241.9:ENST00000373238.5:ENST00000431664.6:ENST00000452767.1	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	4.12187	4.173170000000001	4.22447	0.0354689	0.0161655	0.137535	0.109464
chr12	121946869	121946969	5238774	0	+	0.42	(0.408,0.44]	chr12	497342	35	INTRON	INTRON	CFAP251	ENSG00000158023.10	ENST00000288912.9:ENST00000397454.2:ENST00000546044.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	24	2	4.12187	4.173170000000001	4.22447	0.0354689	0.0161655	0.137535	0.109464
chr13	79365377	79365477	5625992	0	-	0.43	(0.408,0.44]	chr13	536626	4	SS5_PROX	SS5_PROX:INTRON	RBM26	ENSG00000139746.16	ENST00000438737.3:ENST00000438724.5:ENST00000622611.4:ENST00000267229.11	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	4.12187	4.173170000000001	4.22447	0.0354689	0.0161655	0.137535	0.109464
chr16	107646	107745	6425448	0	-	0.434343	(0.408,0.44]	chr16	617341	68	INTRON	INTRON	NPRL3	ENSG00000103148.17	ENST00000611875.5:ENST00000622194.4:ENST00000621703.4:ENST00000399953.7:ENST00000473674.5:ENST00000457916.5:ENST00000483663.5:ENST00000422814.5:ENST00000468260.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	24	2	4.12187	4.173170000000001	4.22447	0.0354689	0.0161655	0.137535	0.109464
chr16	18067306	18067406	6453306	0	-	0.41	(0.408,0.44]	chr16	621960	635	INTRON	INTRON	ENSG00000259929:ENSG00000260242	ENSG00000259929.5:ENSG00000260242.1	ENST00000567304.1:ENST00000563866.1	lncRNA	lncRNA	lncRNA	lncRNA	0	24	2	4.12187	4.173170000000001	4.22447	0.0354689	0.0161655	0.137535	0.109464
chr16	75040163	75040263	6389830	0	+	0.43	(0.408,0.44]	chr16	614482	374	INTRON	INTRON	ZNRF1	ENSG00000186187.12	ENST00000335325.9:ENST00000320619.10:ENST00000567962.5:ENST00000566250.5:ENST00000564320.1:ENST00000568511.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	24	2	4.12187	4.173170000000001	4.22447	0.0354689	0.0161655	0.137535	0.109464
chr17	29161292	29161392	6747217	0	-	0.43	(0.408,0.44]	chr17	663199	210	INTRON	INTRON	MYO18A	ENSG00000196535.19	ENST00000527372.7:ENST00000531253.5:ENST00000533112.5:ENST00000585573.6:ENST00000590565.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	24	2	4.12187	4.173170000000001	4.22447	0.0354689	0.0161655	0.137535	0.109464
chr17	29751351	29751451	6749382	0	-	0.41	(0.408,0.44]	chr17	663424	479	INTRON	INTRON	SSH2	ENSG00000141298.19	ENST00000540801.6:ENST00000269033.7:ENST00000649863.1:ENST00000394848.5:ENST00000324677.12:ENST00000579040.5:ENST00000577483.1:ENST00000592397.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	24	2	4.12187	4.173170000000001	4.22447	0.0354689	0.0161655	0.137535	0.109464
chr19	10399578	10399677	7136013	0	-	0.434343	(0.408,0.44]	chr19	719562	30	INTRON	INTRON	CDC37	ENSG00000105401.9	ENST00000222005.7:ENST00000591248.5:ENST00000589629.5:ENST00000593124.1:ENST00000588869.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	24	2	4.12187	4.173170000000001	4.22447	0.0354689	0.0161655	0.137535	0.109464
chr19	57286161	57286259	7103587	0	+	0.438776	(0.408,0.44]	chr19	712857	11	INTRON	INTRON	ZNF460	ENSG00000197714.9	ENST00000537645.5:ENST00000360338.4:ENST00000599602.1	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	4.12187	4.173170000000001	4.22447	0.0354689	0.0161655	0.137535	0.109464
chr2	190883068	190883168	959503	0	+	0.42	(0.408,0.44]	chr2	104160	12	INTRON	INTRON	GLS	ENSG00000115419.13	ENST00000320717.8:ENST00000338435.8:ENST00000479552.1:ENST00000496170.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	24	2	4.12187	4.173170000000001	4.22447	0.0354689	0.0161655	0.137535	0.109464
chr2	235812126	235812226	1044531	0	+	0.44	(0.408,0.44]	chr2	111284	44	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1:ENST00000409538.5:ENST00000614409.4:ENST00000619456.4:ENST00000428334.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	24	2	4.12187	4.173170000000001	4.22447	0.0354689	0.0161655	0.137535	0.109464
chr21	34119189	34119288	7401552	0	+	0.414141	(0.408,0.44]	chr21	753975	131	INTRON	INTRON	MRPS6	ENSG00000243927.6	ENST00000488492.5:ENST00000477091.5:ENST00000399312.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	24	2	4.12187	4.173170000000001	4.22447	0.0354689	0.0161655	0.137535	0.109464
chr21	34974351	34974451	7448132	0	-	0.42	(0.408,0.44]	chr21	759873	810	INTRON	INTRON	RUNX1	ENSG00000159216.19	ENST00000300305.7:ENST00000675419.1:ENST00000437180.5:ENST00000482318.5:ENST00000455571.5:ENST00000475045.6:ENST00000416754.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	24	2	4.12187	4.173170000000001	4.22447	0.0354689	0.0161655	0.137535	0.109464
chr3	4587245	4587345	1350808	0	+	0.44	(0.408,0.44]	chr3	141961	658	INTRON	INTRON	ITPR1	ENSG00000150995.21	ENST00000357086.10:ENST00000649015.2:ENST00000354582.12:ENST00000467056.6:ENST00000456211.8:ENST00000443694.5:ENST00000648266.1:ENST00000477577.2:ENST00000544951.6:ENST00000650294.1:ENST00000648309.1:ENST00000302640.13	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	24	2	4.12187	4.173170000000001	4.22447	0.0354689	0.0161655	0.137535	0.109464
chr7	121048391	121048491	3394236	0	+	0.44	(0.408,0.44]	chr7	317688	10	INTRON	INTRON	CPED1	ENSG00000106034.18	ENST00000340646.9:ENST00000310396.10:ENST00000428526.5:ENST00000495036.5:ENST00000450913.6:ENST00000520801.5:ENST00000521774.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	24	2	4.12187	4.173170000000001	4.22447	0.0354689	0.0161655	0.137535	0.109464
chr7	149907055	149907155	3672790	0	-	0.44	(0.408,0.44]	chr7	340861	143	INTRON	INTRON	ENSG00000224016	ENSG00000224016.2	ENST00000297369.10	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	0	24	2	4.12187	4.173170000000001	4.22447	0.0354689	0.0161655	0.137535	0.109464
chr8	11860209	11860307	3908779	0	-	0.418367	(0.408,0.44]	chr8	358204	19	INTRON	INTRON	CTSB	ENSG00000164733.22	ENST00000677671.1:ENST00000678092.1:ENST00000679128.1:ENST00000677873.1:ENST00000676691.1:ENST00000678598.1:ENST00000353047.11:ENST00000677650.1:ENST00000526481.7:ENST00000676825.1:ENST00000678242.1:ENST00000677366.1:ENST00000677544.1:ENST00000530640.7:ENST00000677418.1:ENST00000677047.1:ENST00000676502.1:ENST00000531089.6:ENST00000678629.1:ENST00000678145.1:ENST00000678929.1:ENST00000677819.1:ENST00000677415.1:ENST00000678357.1:ENST00000676755.1:ENST00000679051.1:ENST00000453527.7:ENST00000678067.1:ENST00000679140.1:ENST00000677082.1:ENST00000533455.6:ENST00000531551.5:ENST00000534382.6:ENST00000679214.1:ENST00000531502.6:ENST00000534510.6:ENST00000677865.1:ENST00000533572.6:ENST00000345125.8:ENST00000526645.6:ENST00000534149.6:ENST00000505496.7:ENST00000532392.2:ENST00000676843.1:ENST00000524500.6:ENST00000525076.6:ENST00000527215.7:ENST00000528965.2:ENST00000532656.7:ENST00000526195.6:ENST00000678615.1:ENST00000527243.6:ENST00000530296.6:ENST00000534636.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	24	2	4.12187	4.173170000000001	4.22447	0.0354689	0.0161655	0.137535	0.109464
chr9	38043829	38043929	4254082	0	-	0.41	(0.408,0.44]	chr9	391691	273	INTRON	INTRON	SHB	ENSG00000107338.10	ENST00000377707.4	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	4.12187	4.173170000000001	4.22447	0.0354689	0.0161655	0.137535	0.109464
chr1	1847079	1847179	362401	0	-	0.48	(0.476,0.515]	chr1	42311	70	INTRON	INTRON	GNB1	ENSG00000078369.18	ENST00000610897.4:ENST00000615252.4:ENST00000378609.9:ENST00000439272.6:ENST00000434686.6:ENST00000472614.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	24	2	4.10113	4.17307	4.24501	0.0247713	0.0226984	0.124921	0.12011
chr1	35938119	35938219	71214	0	+	0.5	(0.476,0.515]	chr1	9132	63	INTRON	INTRON	AGO3	ENSG00000126070.20	ENST00000324350.9:ENST00000397828.3:ENST00000634486.1:ENST00000373191.9:ENST00000246314.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	24	2	4.10113	4.17307	4.24501	0.0247713	0.0226984	0.124921	0.12011
chr1	100100068	100100167	515525	0	-	0.494949	(0.476,0.515]	chr1	60434	115	INTRON	INTRON	SASS6	ENSG00000156876.10	ENST00000462159.1:ENST00000287482.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	24	2	4.10113	4.17307	4.24501	0.0247713	0.0226984	0.124921	0.12011
chr1	224295604	224295703	644560	0	-	0.50505	(0.476,0.515]	chr1	76135	8	INTRON	INTRON	NVL	ENSG00000143748.18	ENST00000391875.6:ENST00000469968.5:ENST00000482491.5:ENST00000281701.11:ENST00000469075.5:ENST00000340871.8:ENST00000467882.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	24	2	4.10113	4.17307	4.24501	0.0247713	0.0226984	0.124921	0.12011
chr10	876089	876188	4542027	0	-	0.515152	(0.476,0.515]	chr10	419281	30	INTRON	INTRON	LARP4B	ENSG00000107929.16	ENST00000316157.8:ENST00000690516.1:ENST00000476529.5:ENST00000406525.6:ENST00000481118.1:ENST00000412411.1:ENST00000693234.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	24	2	4.10113	4.17307	4.24501	0.0247713	0.0226984	0.124921	0.12011
chr16	7889884	7889984	6439405	0	-	0.49	(0.476,0.515]	chr16	620333	7	INTRON	INTRON	ENSG00000260289	ENSG00000260289.2	ENST00000670665.1:ENST00000654046.1:ENST00000567103.2	lncRNA	lncRNA	lncRNA	lncRNA	0	24	2	4.10113	4.17307	4.24501	0.0247713	0.0226984	0.124921	0.12011
chr16	21409738	21409838	6460398	0	-	0.49	(0.476,0.515]	chr16	623168	25	INTRON	INTRON	NPIPB3	ENSG00000169246.16	ENST00000504841.6:ENST00000419180.6:ENST00000448012.6:ENST00000542953.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	24	2	4.10113	4.17307	4.24501	0.0247713	0.0226984	0.124921	0.12011
chr17	28595665	28595765	6744629	0	-	0.48	(0.476,0.515]	chr17	662460	22	INTRON	INTRON	SPAG5	ENSG00000076382.17	ENST00000321765.10:ENST00000578479.1:ENST00000580567.6:ENST00000536674.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	24	2	4.10113	4.17307	4.24501	0.0247713	0.0226984	0.124921	0.12011
chr19	11033517	11033617	7016327	0	+	0.51	(0.476,0.515]	chr19	697333	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SMARCA4	ENSG00000127616.20	ENST00000644737.1:ENST00000642726.1:ENST00000646484.1:ENST00000643549.1:ENST00000643296.1:ENST00000647230.1:ENST00000642628.1:ENST00000646510.1:ENST00000429416.8:ENST00000344626.10:ENST00000646693.2:ENST00000645460.1:ENST00000541122.6:ENST00000589677.5:ENST00000444061.8:ENST00000590574.6:ENST00000643995.1:ENST00000644327.1:ENST00000644065.1:ENST00000644963.1:ENST00000643208.1:ENST00000645061.1:ENST00000642350.1:ENST00000647268.1:ENST00000643857.1:ENST00000644267.1:ENST00000646183.1:ENST00000646746.1:ENST00000643534.1:ENST00000646593.1:ENST00000645648.1:ENST00000592604.6:ENST00000591595.5:ENST00000646236.1:ENST00000585799.5:ENST00000642508.1:ENST00000645236.1:ENST00000586892.1:ENST00000538456.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	24	2	4.10113	4.17307	4.24501	0.0247713	0.0226984	0.124921	0.12011
chr2	32646260	32646360	733685	0	+	0.49	(0.476,0.515]	chr2	84737	55	INTRON	INTRON	TTC27	ENSG00000018699.13	ENST00000317907.9:ENST00000647819.1:ENST00000454690.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	24	2	4.10113	4.17307	4.24501	0.0247713	0.0226984	0.124921	0.12011
chr2	240519063	240519162	1346263	0	-	0.484848	(0.476,0.515]	chr2	141220	58	INTRON	INTRON	ANKMY1	ENSG00000144504.16	ENST00000361678.8:ENST00000391987.5:ENST00000401804.6:ENST00000272972.7:ENST00000406958.5:ENST00000373318.6:ENST00000403283.5:ENST00000391988.3	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	4.10113	4.17307	4.24501	0.0247713	0.0226984	0.124921	0.12011
chr20	64019211	64019309	7301772	0	+	0.479592	(0.476,0.515]	chr20	743234	20	INTRON	INTRON	PRPF6	ENSG00000101161.8	ENST00000266079.5	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	4.10113	4.17307	4.24501	0.0247713	0.0226984	0.124921	0.12011
chr3	15080231	15080331	1620161	0	-	0.5	(0.476,0.515]	chr3	167499	1	SS5_PROX	SS5_PROX:INTRON	RBSN	ENSG00000131381.12	ENST00000253699.7:ENST00000476527.6:ENST00000426541.1:ENST00000483098.5:ENST00000449964.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	24	2	4.10113	4.17307	4.24501	0.0247713	0.0226984	0.124921	0.12011
chr3	49781774	49781874	1694836	0	-	0.5	(0.476,0.515]	chr3	173818	330	INTRON	INTRON	IP6K1	ENSG00000176095.12	ENST00000321599.9:ENST00000395238.5:ENST00000613416.4:ENST00000468463.5:ENST00000460540.1:ENST00000498149.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	24	2	4.10113	4.17307	4.24501	0.0247713	0.0226984	0.124921	0.12011
chr4	184687755	184687854	2087159	0	+	0.515152	(0.476,0.515]	chr4	206364	17	INTRON	INTRON	PRIMPOL	ENSG00000164306.11	ENST00000515774.5:ENST00000503752.5:ENST00000512834.5:ENST00000314970.11:ENST00000509002.5:ENST00000508001.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	24	2	4.10113	4.17307	4.24501	0.0247713	0.0226984	0.124921	0.12011
chr6	111275509	111275609	2939941	0	+	0.48	(0.476,0.515]	chr6	276923	85	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	MFSD4B	ENSG00000173214.7	ENST00000671876.2:ENST00000672750.1:ENST00000672191.1:ENST00000671883.1:ENST00000673446.1:ENST00000444259.2:ENST00000653951.2:ENST00000673245.1:ENST00000673164.1:ENST00000658925.2:ENST00000654539.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	24	2	4.10113	4.17307	4.24501	0.0247713	0.0226984	0.124921	0.12011
chr7	75477270	75477368	3558842	0	-	0.489796	(0.476,0.515]	chr7	331555	17	INTRON	INTRON	POM121C:ENSG00000242073	ENSG00000272391.6:ENSG00000242073.2	ENST00000615331.5:ENST00000398379.2:ENST00000415277.2	protein_coding	protein_coding	protein_coding:transcribed_unprocessed_pseudogene	protein_coding:transcribed_unprocessed_pseudogene	0	24	2	4.10113	4.17307	4.24501	0.0247713	0.0226984	0.124921	0.12011
chr9	15447544	15447644	4104631	0	+	0.5	(0.476,0.515]	chr9	373849	3	SS5_PROX	SS5_PROX:INTRON	SNAPC3	ENSG00000164975.16	ENST00000467062.5:ENST00000610884.4:ENST00000490969.5:ENST00000380821.8:ENST00000421710.5:ENST00000380799.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	24	2	4.10113	4.17307	4.24501	0.0247713	0.0226984	0.124921	0.12011
chr9	123412987	123413081	4340824	0	-	0.489362	(0.476,0.515]	chr9	399003	8	INTRON	INTRON	DENND1A	ENSG00000119522.17	ENST00000373624.6:ENST00000473039.5:ENST00000394215.7:ENST00000373620.7:ENST00000491650.5:ENST00000497135.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	24	2	4.10113	4.17307	4.24501	0.0247713	0.0226984	0.124921	0.12011
chr9	131413822	131413922	4217167	0	+	0.5	(0.476,0.515]	chr9	386720	192	INTRON	INTRON	PRRC2B	ENSG00000288701.1	ENST00000682525.1:ENST00000684596.1:ENST00000683519.1:ENST00000682501.1	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	4.10113	4.17307	4.24501	0.0247713	0.0226984	0.124921	0.12011
chr7	158688138	158688236	3688626	0	-	0.326531	(0.32,0.35]	chr7	342251	3	INTRON	INTRON	NCAPG2	ENSG00000146918.20	ENST00000356309.8:ENST00000432615.5:ENST00000409423.5:ENST00000441982.5:ENST00000467785.5:ENST00000409339.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	55	2	2.96746	4.1728950000000005	5.37833	0.00815799	0.00174321	0.0810802	0.0375363
chr19	10721744	10721844	7013806	0	+	0.52	(0.515,0.57]	chr19	696920	27	INTRON	INTRON	DNM2	ENSG00000079805.19	ENST00000683738.1:ENST00000682285.1:ENST00000682524.1:ENST00000355667.11:ENST00000389253.9:ENST00000585892.5:ENST00000359692.10:ENST00000408974.8:ENST00000586939.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	73	2	2.69048	4.172610000000001	5.65474	8.78655e-4	9.00945e-5	0.0269932	0.00844245
chr1	28765335	28765435	58632	0	+	0.27	[0,0.28]	chr1	7605	210	INTRON	INTRON	YTHDF2	ENSG00000198492.16	ENST00000542507.5:ENST00000373812.8:ENST00000541996.5:ENST00000478283.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	27	2	3.96122	4.1725449999999995	4.38387	0.0617993	0.0501911	0.193423	0.156383
chr1	96805530	96805629	168791	0	+	0.242424	[0,0.28]	chr1	18253	7	EXON_MRNA	EXON_MRNA:INTRON	PTBP2	ENSG00000117569.19	ENST00000482253.5:ENST00000675735.1:ENST00000609116.5:ENST00000674951.1:ENST00000675080.1:ENST00000426398.3:ENST00000370197.5:ENST00000370198.5:ENST00000476419.5:ENST00000676292.1:ENST00000676096.1:ENST00000675365.1:ENST00000674579.1:ENST00000675401.1:ENST00000459735.5:ENST00000476783.5:ENST00000492905.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	27	2	3.96122	4.1725449999999995	4.38387	0.0617993	0.0501911	0.193423	0.156383
chr10	38098824	38098923	4427497	0	+	0.272727	[0,0.28]	chr10	408039	18	INTRON	INTRON	ZNF37A	ENSG00000075407.19	ENST00000638053.1:ENST00000351773.7:ENST00000685332.1:ENST00000361085.9:ENST00000479469.5:ENST00000477790.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	27	2	3.96122	4.1725449999999995	4.38387	0.0617993	0.0501911	0.193423	0.156383
chr10	43612226	43612325	4429577	0	+	0.262626	[0,0.28]	chr10	408270	25	INTRON	INTRON	ZNF485	ENSG00000198298.13	ENST00000430885.5:ENST00000374435.3:ENST00000361807.8	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	3.96122	4.1725449999999995	4.38387	0.0617993	0.0501911	0.193423	0.156383
chr11	87190377	87190477	4844340	0	+	0.24	[0,0.28]	chr11	451862	326	INTRON	INTRON	TMEM135	ENSG00000166575.17	ENST00000340353.11:ENST00000305494.6:ENST00000532959.5:ENST00000525018.5	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	3.96122	4.1725449999999995	4.38387	0.0617993	0.0501911	0.193423	0.156383
chr17	20942912	20943012	6576814	0	+	0.23	[0,0.28]	chr17	639410	35	INTRON	INTRON	CCDC144NL-AS1	ENSG00000233098.10	ENST00000439794.6:ENST00000580056.5:ENST00000582583.4:ENST00000583481.5:ENST00000433763.6:ENST00000423473.6	lncRNA	lncRNA	lncRNA	lncRNA	0	27	2	3.96122	4.1725449999999995	4.38387	0.0617993	0.0501911	0.193423	0.156383
chr3	15793026	15793126	1623772	0	-	0.23	[0,0.28]	chr3	168013	110	INTRON	INTRON	ANKRD28	ENSG00000206560.12	ENST00000399451.6:ENST00000624145.3:ENST00000683139.1:ENST00000412318.5:ENST00000497037.5:ENST00000451422.1:ENST00000498524.5:ENST00000439830.5:ENST00000461696.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	27	2	3.96122	4.1725449999999995	4.38387	0.0617993	0.0501911	0.193423	0.156383
chr3	28330308	28330406	1645676	0	-	0.265306	[0,0.28]	chr3	168968	30	INTRON	INTRON	AZI2	ENSG00000163512.14	ENST00000429369.5:ENST00000479665.6:ENST00000295748.7:ENST00000492044.6:ENST00000463512.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	27	2	3.96122	4.1725449999999995	4.38387	0.0617993	0.0501911	0.193423	0.156383
chr5	105320061	105320161	2695627	0	-	0.2	[0,0.28]	chr5	254248	738	INTRON	INTRON	ENSG00000251574	ENSG00000251574.8	ENST00000503650.1	lncRNA	lncRNA	lncRNA	lncRNA	0	27	2	3.96122	4.1725449999999995	4.38387	0.0617993	0.0501911	0.193423	0.156383
chr6	88849254	88849354	3157987	0	-	0.25	[0,0.28]	chr6	294204	1	SS5_PROX	SS5_PROX:INTRON	RNGTT	ENSG00000111880.16	ENST00000369485.9:ENST00000369475.7:ENST00000627296.1:ENST00000538899.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	27	2	3.96122	4.1725449999999995	4.38387	0.0617993	0.0501911	0.193423	0.156383
chr7	39631616	39631716	3309230	0	+	0.24	[0,0.28]	chr7	307358	68	INTRON	INTRON	RALA	ENSG00000006451.8	ENST00000468201.1:ENST00000005257.7:ENST00000436179.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	27	2	3.96122	4.1725449999999995	4.38387	0.0617993	0.0501911	0.193423	0.156383
chr7	121393469	121393569	3630875	0	-	0.22	[0,0.28]	chr7	337397	101	INTRON	INTRON	FAM3C	ENSG00000196937.11	ENST00000359943.8:ENST00000412653.5:ENST00000426156.1	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	3.96122	4.1725449999999995	4.38387	0.0617993	0.0501911	0.193423	0.156383
chr9	40094559	40094659	4258998	0	-	0.24	[0,0.28]	chr9	391902	1036	INTRON	INTRON	ENSG00000284116	ENSG00000284116.1	ENST00000639363.1	lncRNA	lncRNA	lncRNA	lncRNA	0	27	2	3.96122	4.1725449999999995	4.38387	0.0617993	0.0501911	0.193423	0.156383
chr9	129870947	129871047	4210822	0	+	0.28	[0,0.28]	chr9	385941	4	SS5_PROX	SS5_PROX:INTRON	USP20	ENSG00000136878.14	ENST00000372429.8:ENST00000315480.9:ENST00000358355.5:ENST00000474895.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	27	2	3.96122	4.1725449999999995	4.38387	0.0617993	0.0501911	0.193423	0.156383
chrX	66212940	66213040	7673193	0	+	0.14	[0,0.28]	chrX	785355	43	INTRON	INTRON	HEPH	ENSG00000089472.18	ENST00000519389.6:ENST00000683049.1:ENST00000458621.6:ENST00000684042.1:ENST00000343002.7:ENST00000336279.9:ENST00000441993.7:ENST00000419594.6:ENST00000682362.1:ENST00000425114.2:ENST00000682927.1:ENST00000683420.1:ENST00000684071.1:ENST00000684625.1:ENST00000684603.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	27	2	3.96122	4.1725449999999995	4.38387	0.0617993	0.0501911	0.193423	0.156383
chrX	110242229	110242329	7862193	0	-	0.26	[0,0.28]	chrX	801505	173	INTRON	INTRON	AMMECR1	ENSG00000101935.12	ENST00000686065.1:ENST00000262844.10:ENST00000372059.6:ENST00000372057.1:ENST00000680410.1:ENST00000473662.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	27	2	3.96122	4.1725449999999995	4.38387	0.0617993	0.0501911	0.193423	0.156383
chr15	45606913	45607013	6018551	0	+	0.34	(0.32,0.35]	chr15	573584	5	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	BLOC1S6	ENSG00000104164.12	ENST00000567740.5:ENST00000567461.5:ENST00000220531.9:ENST00000567523.5:ENST00000564310.2:ENST00000565323.6:ENST00000568816.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	88	2	2.43956	4.172355	5.90515	0.00352597	2.30541e-4	0.0546236	0.013917
chr5	180572320	180572417	2562655	0	+	0.484536	(0.476,0.515]	chr5	245140	5	INTRON	INTRON	CNOT6	ENSG00000113300.13	ENST00000261951.9:ENST00000393356.7:ENST00000618123.4	protein_coding	protein_coding	protein_coding	protein_coding	1	53	2	2.99852	4.172205	5.34589	0.0077575	3.224e-4	0.0757402	0.0159645
chr2	96362100	96362199	830481	0	+	0.454545	(0.44,0.476]	chr2	92859	10	INTRON	INTRON	NCAPH	ENSG00000121152.10	ENST00000240423.9:ENST00000427946.5:ENST00000435975.5:ENST00000455200.5	protein_coding	protein_coding	protein_coding	protein_coding	1	50	2	3.14559	4.172195	5.1988	0.00384923	0.00151532	0.0562562	0.0352794
chr20	32364191	32364291	7255877	0	+	0.4	(0.378,0.408]	chr20	737046	30	INTRON	INTRON	ASXL1	ENSG00000171456.21	ENST00000651418.1:ENST00000375687.10:ENST00000613218.4:ENST00000646367.1:ENST00000644587.1:ENST00000620121.4:ENST00000645337.1:ENST00000649901.1:ENST00000646985.1:ENST00000645035.1:ENST00000497249.6:ENST00000643168.1:ENST00000375689.5:ENST00000306058.9:ENST00000555343.2:ENST00000645688.1:ENST00000642676.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	55	2	2.95459	4.172035	5.38948	0.00957623	2.85992e-4	0.0820838	0.0150568
chr1	176120174	176120274	590833	0	-	0.47	(0.44,0.476]	chr1	70926	31	INTRON	INTRON	COP1	ENSG00000143207.21	ENST00000367669.8:ENST00000367667.5:ENST00000367666.5:ENST00000649803.1:ENST00000308769.12:ENST00000459744.5:ENST00000498306.5:ENST00000491600.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	24	2	4.01038	4.17192	4.33346	0.0433743	0.0120349	0.148082	0.0962115
chr10	17228260	17228357	4567600	0	-	0.443299	(0.44,0.476]	chr10	421339	15	INTRON	INTRON	VIM-AS1	ENSG00000229124.8	ENST00000605833.2:ENST00000661048.1	lncRNA	lncRNA	lncRNA	lncRNA	0	24	2	4.01038	4.17192	4.33346	0.0433743	0.0120349	0.148082	0.0962115
chr13	49176909	49177005	5489018	0	+	0.458333	(0.44,0.476]	chr13	525683	10	INTRON	INTRON	FNDC3A	ENSG00000102531.16	ENST00000492622.6:ENST00000541916.5:ENST00000484074.5:ENST00000398316.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	24	2	4.01038	4.17192	4.33346	0.0433743	0.0120349	0.148082	0.0962115
chr13	49747293	49747393	5592619	0	-	0.47	(0.44,0.476]	chr13	534609	3	SS3_PROX	SS3_PROX:INTRON	KPNA3	ENSG00000102753.10	ENST00000261667.8	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	4.01038	4.17192	4.33346	0.0433743	0.0120349	0.148082	0.0962115
chr14	55283626	55283726	5725917	0	+	0.46	(0.44,0.476]	chr14	543452	44	INTRON	INTRON	FBXO34	ENSG00000178974.11	ENST00000681400.1:ENST00000681904.1:ENST00000679934.1:ENST00000681074.1:ENST00000680682.1:ENST00000680658.1:ENST00000313833.5:ENST00000554940.1:ENST00000440021.1:ENST00000555087.1:ENST00000557647.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	24	2	4.01038	4.17192	4.33346	0.0433743	0.0120349	0.148082	0.0962115
chr14	73885532	73885629	5786636	0	+	0.463918	(0.44,0.476]	chr14	548156	15	UTR3	UTR3:EXON_MRNA	PTGR2	ENSG00000140043.12	ENST00000555661.6	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	4.01038	4.17192	4.33346	0.0433743	0.0120349	0.148082	0.0962115
chr15	64126720	64126808	6043174	0	+	0.465909	(0.44,0.476]	chr15	575526	1	SS3_PROX	SS3_PROX:INTRON	SNX1	ENSG00000028528.15	ENST00000560829.5:ENST00000559844.6:ENST00000380285.7:ENST00000261889.9:ENST00000560260.5:ENST00000561026.5:ENST00000558040.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	24	2	4.01038	4.17192	4.33346	0.0433743	0.0120349	0.148082	0.0962115
chr15	90542036	90542136	6099849	0	+	0.45	(0.44,0.476]	chr15	580749	15	INTRON	INTRON	CRTC3	ENSG00000140577.17	ENST00000268184.11:ENST00000420329.6:ENST00000691029.1:ENST00000686240.1:ENST00000560098.5:ENST00000561218.5:ENST00000692149.1:ENST00000558619.5:ENST00000560927.1:ENST00000687075.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	24	2	4.01038	4.17192	4.33346	0.0433743	0.0120349	0.148082	0.0962115
chr16	69152391	69152490	6377460	0	+	0.444444	(0.44,0.476]	chr16	612940	11	INTRON	INTRON	UTP4	ENSG00000141076.18	ENST00000562237.5:ENST00000314423.12:ENST00000352319.8:ENST00000563094.5	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	4.01038	4.17192	4.33346	0.0433743	0.0120349	0.148082	0.0962115
chr16	84078750	84078850	6531808	0	-	0.47	(0.44,0.476]	chr16	632870	27	INTRON	INTRON	MBTPS1	ENSG00000140943.18	ENST00000343411.8:ENST00000564643.1:ENST00000569770.5:ENST00000563231.5:ENST00000565863.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	24	2	4.01038	4.17192	4.33346	0.0433743	0.0120349	0.148082	0.0962115
chr17	29132226	29132323	6746918	0	-	0.453608	(0.44,0.476]	chr17	663177	4	INTRON	INTRON	MYO18A	ENSG00000196535.19	ENST00000527372.7:ENST00000531253.5:ENST00000533112.5:ENST00000530254.6:ENST00000590242.5:ENST00000528564.2:ENST00000528322.6:ENST00000585573.6:ENST00000533420.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	24	2	4.01038	4.17192	4.33346	0.0433743	0.0120349	0.148082	0.0962115
chr17	30526017	30526116	6589559	0	+	0.464646	(0.44,0.476]	chr17	640834	38	UTR3	UTR3:EXON_MRNA	GOSR1	ENSG00000108587.16	ENST00000225724.9:ENST00000451249.7	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	4.01038	4.17192	4.33346	0.0433743	0.0120349	0.148082	0.0962115
chr17	39273593	39273690	6765364	0	-	0.463918	(0.44,0.476]	chr17	665443	24	INTRON	INTRON	FBXL20	ENSG00000108306.13	ENST00000264658.11:ENST00000583610.5:ENST00000394294.7:ENST00000577399.5	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	4.01038	4.17192	4.33346	0.0433743	0.0120349	0.148082	0.0962115
chr17	62599159	62599256	6654110	0	+	0.463918	(0.44,0.476]	chr17	649424	21	UTR3	UTR3:EXON_MRNA:INTRON	TLK2	ENSG00000146872.19	ENST00000582809.5:ENST00000682085.1:ENST00000346027.10:ENST00000326270.13:ENST00000682203.1:ENST00000343388.11:ENST00000683536.1:ENST00000684440.1:ENST00000684772.1:ENST00000682274.1:ENST00000682827.1:ENST00000682075.1:ENST00000683104.1:ENST00000684012.1:ENST00000581041.5:ENST00000684553.1:ENST00000683737.1:ENST00000684133.1:ENST00000582660.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	24	2	4.01038	4.17192	4.33346	0.0433743	0.0120349	0.148082	0.0962115
chr3	37003508	37003606	1395247	0	+	0.44898	(0.44,0.476]	chr3	146186	21	INTRON	INTRON	MLH1	ENSG00000076242.16	ENST00000536378.5:ENST00000673899.1:ENST00000674111.1:ENST00000673972.1:ENST00000457004.5:ENST00000673713.1:ENST00000231790.8:ENST00000673715.1:ENST00000432299.6:ENST00000673897.1:ENST00000442249.6:ENST00000454028.5:ENST00000673947.1:ENST00000456676.6:ENST00000673673.1:ENST00000674019.1:ENST00000458205.6:ENST00000413212.2:ENST00000447829.6:ENST00000673990.1:ENST00000455445.6:ENST00000435176.5:ENST00000539477.6:ENST00000441265.6:ENST00000492474.5:ENST00000429117.5:ENST00000674107.1:ENST00000466900.5:ENST00000485889.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	24	2	4.01038	4.17192	4.33346	0.0433743	0.0120349	0.148082	0.0962115
chr5	34945221	34945297	2337521	0	+	0.460526	(0.44,0.476]	chr5	225769	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DNAJC21	ENSG00000168724.17	ENST00000648817.1:ENST00000382021.2:ENST00000642851.1:ENST00000642675.1:ENST00000644357.1:ENST00000642285.1:ENST00000646714.1:ENST00000514237.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	24	2	4.01038	4.17192	4.33346	0.0433743	0.0120349	0.148082	0.0962115
chr6	4052312	4052406	2790018	0	+	0.457447	(0.44,0.476]	chr6	263535	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PRPF4B	ENSG00000112739.17	ENST00000480058.5:ENST00000337659.11:ENST00000481109.5:ENST00000463634.6:ENST00000466185.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	24	2	4.01038	4.17192	4.33346	0.0433743	0.0120349	0.148082	0.0962115
chr6	149631161	149631260	3245946	0	-	0.474747	(0.44,0.476]	chr6	301588	75	INTRON	INTRON	KATNA1	ENSG00000186625.14	ENST00000335643.12:ENST00000367411.7:ENST00000335647.9:ENST00000470620.1:ENST00000444282.5:ENST00000420200.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	24	2	4.01038	4.17192	4.33346	0.0433743	0.0120349	0.148082	0.0962115
chr8	28889641	28889741	3929178	0	-	0.47	(0.44,0.476]	chr8	359812	4	SS5_PROX	SS5_PROX:INTRON	INTS9	ENSG00000104299.15	ENST00000416984.6:ENST00000521022.6:ENST00000523303.5:ENST00000521777.5:ENST00000522363.5:ENST00000520983.5:ENST00000523436.5:ENST00000518510.5:ENST00000520184.1:ENST00000520831.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	24	2	4.01038	4.17192	4.33346	0.0433743	0.0120349	0.148082	0.0962115
chr19	52558210	52558307	7095570	0	+	0.608247	(0.57,1]	chr19	711374	3	EXON_LNCRNA	EXON_LNCRNA:INTRON	ZNF808:ZNF701:ENSG00000289102	ENSG00000198482.14:ENSG00000167562.14:ENSG00000289102.1	ENST00000487863.5:ENST00000478039.1:ENST00000686452.1	protein_coding	nonsense_mediated_decay	protein_coding:lncRNA	nonsense_mediated_decay:lncRNA:processed_transcript	2	65	2	3.76536	4.171875	4.57839	1.35835e-4	5.97765e-7	0.0100405	4.5217e-4
chr4	169573931	169574031	2296765	0	-	0.45	(0.44,0.476]	chr4	222229	102	INTRON	INTRON	NEK1	ENSG00000137601.18	ENST00000687054.1:ENST00000507142.6:ENST00000686697.1:ENST00000688934.1:ENST00000685111.1:ENST00000687528.1:ENST00000687643.1:ENST00000685677.1:ENST00000439128.6:ENST00000511633.5:ENST00000510533.5:ENST00000512193.5:ENST00000693604.1:ENST00000692450.1:ENST00000687219.1:ENST00000693085.1:ENST00000509912.5:ENST00000690631.1:ENST00000688487.1:ENST00000688653.1:ENST00000692868.1:ENST00000692218.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	80	2	2.53696	4.171715	5.80647	0.00204135	1.22335e-4	0.041855	0.00993581
chr4	138241592	138241692	2245826	0	-	0.45	(0.44,0.476]	chr4	219515	4	SS5_PROX	SS5_PROX:INTRON	SLC7A11	ENSG00000151012.13	ENST00000280612.9	protein_coding	protein_coding	protein_coding	protein_coding	6	111	2	2.1371000000000002	4.171615	6.20613	0.00205988	1.69413e-5	0.0420839	0.00330681
chr1	193171890	193171990	285120	0	+	0.38	(0.378,0.408]	chr1	32819	103	INTRON	INTRON	CDC73	ENSG00000134371.14	ENST00000649895.1:ENST00000643006.1:ENST00000367435.5:ENST00000650197.1:ENST00000648071.1:ENST00000635846.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	83	2	2.78931	4.171595	5.55388	6.20851e-4	5.01023e-4	0.0223951	0.0206993
chr1	1553866	1553966	360112	0	-	0.47	(0.44,0.476]	chr1	41847	75	INTRON	INTRON	SSU72	ENSG00000160075.12	ENST00000291386.4:ENST00000378725.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	24	2	4.1054	4.171475	4.23755	0.0263357	0.0220205	0.123836	0.122221
chr1	11743232	11743332	25317	0	+	0.45	(0.44,0.476]	chr1	2739	66	INTRON	INTRON	AGTRAP	ENSG00000177674.16	ENST00000376637.7:ENST00000476512.5:ENST00000400895.6:ENST00000494437.1:ENST00000314340.10:ENST00000491346.5:ENST00000376629.8:ENST00000376627.6:ENST00000452018.6:ENST00000510878.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	24	2	4.1054	4.171475	4.23755	0.0263357	0.0220205	0.123836	0.122221
chr1	151443001	151443100	554799	0	-	0.454545	(0.44,0.476]	chr1	65554	4	INTRON	INTRON	POGZ	ENSG00000143442.22	ENST00000271715.7:ENST00000358476.7:ENST00000368863.6:ENST00000409503.5:ENST00000531094.5:ENST00000491586.5:ENST00000485040.5:ENST00000467287.5:ENST00000533461.5:ENST00000533351.5:ENST00000450842.1:ENST00000476128.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	24	2	4.1054	4.171475	4.23755	0.0263357	0.0220205	0.123836	0.122221
chr10	87189089	87189188	4482193	0	+	0.474747	(0.44,0.476]	chr10	412453	15	INTRON	INTRON	SHLD2	ENSG00000122376.12	ENST00000298784.5:ENST00000298786.5	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	4.1054	4.171475	4.23755	0.0263357	0.0220205	0.123836	0.122221
chr11	74924615	74924714	4988963	0	-	0.474747	(0.44,0.476]	chr11	471350	29	INTRON	INTRON	XRRA1	ENSG00000166435.16	ENST00000530562.5:ENST00000340360.10:ENST00000321448.12:ENST00000684022.1:ENST00000531849.5:ENST00000527087.5:ENST00000528219.5:ENST00000525407.5:ENST00000531852.5:ENST00000533598.5:ENST00000534041.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	24	2	4.1054	4.171475	4.23755	0.0263357	0.0220205	0.123836	0.122221
chr12	108555973	108556072	5405713	0	-	0.444444	(0.44,0.476]	chr12	515930	19	INTRON	INTRON	SART3	ENSG00000075856.12	ENST00000546815.6:ENST00000651280.1:ENST00000228284.8:ENST00000546728.5:ENST00000431469.6:ENST00000547528.5:ENST00000552221.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	24	2	4.1054	4.171475	4.23755	0.0263357	0.0220205	0.123836	0.122221
chr12	111843212	111843307	5228737	0	+	0.452632	(0.44,0.476]	chr12	495630	1	EXON_MRNA	EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MAPKAPK5	ENSG00000089022.14	ENST00000550735.7:ENST00000547305.1:ENST00000553053.5:ENST00000546394.1:ENST00000551404.6:ENST00000549875.1:ENST00000602983.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	24	2	4.1054	4.171475	4.23755	0.0263357	0.0220205	0.123836	0.122221
chr14	55340317	55340417	5726487	0	+	0.45	(0.44,0.476]	chr14	543472	70	INTRON	INTRON	FBXO34	ENSG00000178974.11	ENST00000681400.1:ENST00000681904.1:ENST00000679934.1:ENST00000681074.1:ENST00000680682.1:ENST00000680658.1:ENST00000313833.5:ENST00000554940.1:ENST00000440021.1:ENST00000555087.1:ENST00000557647.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	24	2	4.1054	4.171475	4.23755	0.0263357	0.0220205	0.123836	0.122221
chr17	65051401	65051501	6818368	0	-	0.46	(0.44,0.476]	chr17	674129	327	INTRON	INTRON	GNA13	ENSG00000120063.10	ENST00000439174.7:ENST00000541118.1	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	4.1054	4.171475	4.23755	0.0263357	0.0220205	0.123836	0.122221
chr2	23991902	23992002	707603	0	+	0.46	(0.44,0.476]	chr2	81969	67	INTRON	INTRON	UBXN2A	ENSG00000173960.14	ENST00000446425.2:ENST00000404924.5:ENST00000309033.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	24	2	4.1054	4.171475	4.23755	0.0263357	0.0220205	0.123836	0.122221
chr2	55682105	55682203	1125649	0	-	0.459184	(0.44,0.476]	chr2	120815	8	INTRON	INTRON	PNPT1	ENSG00000138035.15	ENST00000447944.7:ENST00000415374.5:ENST00000260604.8:ENST00000429805.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	24	2	4.1054	4.171475	4.23755	0.0263357	0.0220205	0.123836	0.122221
chr2	158629970	158630068	898892	0	+	0.44898	(0.44,0.476]	chr2	99408	42	INTRON	INTRON	PKP4	ENSG00000144283.23	ENST00000389759.8:ENST00000426248.7:ENST00000389757.7:ENST00000452162.5:ENST00000421462.5:ENST00000481115.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	24	2	4.1054	4.171475	4.23755	0.0263357	0.0220205	0.123836	0.122221
chr2	170023579	170023678	910142	0	+	0.454545	(0.44,0.476]	chr2	100412	63	INTRON	INTRON	UBR3	ENSG00000144357.18	ENST00000272793.11:ENST00000430321.5:ENST00000392632.6:ENST00000439681.1:ENST00000444475.5:ENST00000465630.1:ENST00000474426.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	24	2	4.1054	4.171475	4.23755	0.0263357	0.0220205	0.123836	0.122221
chr20	38058705	38058799	7269130	0	+	0.468085	(0.44,0.476]	chr20	738697	7	INTRON	INTRON	RPRD1B	ENSG00000101413.12	ENST00000462548.6:ENST00000373433.9:ENST00000495457.1:ENST00000449186.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	24	2	4.1054	4.171475	4.23755	0.0263357	0.0220205	0.123836	0.122221
chr22	42232731	42232831	7593188	0	-	0.46	(0.44,0.476]	chr22	777718	170	INTRON	INTRON	TCF20	ENSG00000100207.21	ENST00000359486.8:ENST00000677622.1:ENST00000683686.1:ENST00000675876.1:ENST00000515426.1	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	4.1054	4.171475	4.23755	0.0263357	0.0220205	0.123836	0.122221
chr3	47441182	47441281	1682508	0	-	0.474747	(0.44,0.476]	chr3	171868	57	INTRON	INTRON	SCAP	ENSG00000114650.21	ENST00000265565.10:ENST00000441517.6:ENST00000320017.10:ENST00000648151.1:ENST00000416208.5:ENST00000416847.5:ENST00000495603.2:ENST00000420588.5:ENST00000485967.1:ENST00000448217.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	24	2	4.1054	4.171475	4.23755	0.0263357	0.0220205	0.123836	0.122221
chr5	65549971	65550070	2634157	0	-	0.444444	(0.44,0.476]	chr5	250174	68	INTRON	INTRON	CENPK	ENSG00000123219.13	ENST00000514814.5:ENST00000396679.6:ENST00000242872.7:ENST00000508421.5:ENST00000510693.5:ENST00000506282.6:ENST00000505960.5:ENST00000509397.5:ENST00000515497.5:ENST00000515873.5:ENST00000510768.5:ENST00000502997.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	24	2	4.1054	4.171475	4.23755	0.0263357	0.0220205	0.123836	0.122221
chr6	149524842	149524942	3245349	0	-	0.46	(0.44,0.476]	chr6	301497	3	SS5_PROX	SS5_PROX:INTRON	PPIL4	ENSG00000131013.4	ENST00000253329.3	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	4.1054	4.171475	4.23755	0.0263357	0.0220205	0.123836	0.122221
chr9	2841674	2841772	4228551	0	-	0.44898	(0.44,0.476]	chr9	388751	28	INTRON	INTRON	PUM3	ENSG00000080608.10	ENST00000397885.3	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	4.1054	4.171475	4.23755	0.0263357	0.0220205	0.123836	0.122221
chrX	74221518	74221618	7840886	0	-	0.47	(0.44,0.476]	chrX	799703	24	INTRON	INTRON	FTX	ENSG00000230590.12	ENST00000603672.5:ENST00000430772.6:ENST00000602776.6:ENST00000638681.1:ENST00000652319.1:ENST00000661133.1:ENST00000652071.1:ENST00000602812.6:ENST00000651703.1:ENST00000653018.1:ENST00000658448.1:ENST00000662240.1:ENST00000652527.1:ENST00000651451.1:ENST00000657611.1:ENST00000660481.1:ENST00000659574.1:ENST00000661084.1:ENST00000662494.1:ENST00000670936.1:ENST00000602420.6:ENST00000658203.1:ENST00000638985.1:ENST00000691187.1:ENST00000603037.2:ENST00000641360.1:ENST00000687056.1:ENST00000654870.2:ENST00000652540.1:ENST00000652331.2:ENST00000652013.1:ENST00000669263.1:ENST00000657070.1:ENST00000665069.1:ENST00000651936.1:ENST00000652496.1:ENST00000653874.2:ENST00000661335.1:ENST00000664123.1:ENST00000658439.1:ENST00000666535.1:ENST00000652970.1:ENST00000423992.3:ENST00000665313.2:ENST00000651140.1:ENST00000660100.1:ENST00000693483.1	lncRNA	lncRNA	lncRNA	lncRNA	0	24	2	4.1054	4.171475	4.23755	0.0263357	0.0220205	0.123836	0.122221
chr16	8944183	8944282	6442560	0	-	0.40404	(0.378,0.408]	chr16	620589	76	INTRON	INTRON	USP7	ENSG00000187555.16	ENST00000673704.1:ENST00000344836.9:ENST00000563961.5:ENST00000563085.5:ENST00000542333.5:ENST00000566004.5:ENST00000569230.5:ENST00000566273.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	68	2	2.78867	4.1712750000000005	5.55388	0.00226991	5.01023e-4	0.0437013	0.0206993
chr5	39056618	39056718	2605470	0	-	0.37	(0.35,0.378]	chr5	247896	351	INTRON	INTRON	RICTOR	ENSG00000164327.13	ENST00000357387.8:ENST00000511516.5:ENST00000296782.9:ENST00000510711.5:ENST00000513566.1:ENST00000514735.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	293	2	4.03106	4.171145	4.31123	1.33109e-6	6.26646e-8	7.49696e-4	1.08736e-4
chr8	52655707	52655807	3950503	0	-	0.26	[0,0.28]	chr8	362313	3	SS5_PROX	SS5_PROX:INTRON	RB1CC1	ENSG00000023287.13	ENST00000025008.10:ENST00000435644.6:ENST00000521611.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	62	2	2.90797	4.171125	5.43428	0.0118539	0.00400834	0.0962115	0.0551303
chr19	3978572	3978672	7119092	0	-	0.52	(0.515,0.57]	chr19	716073	4	SS3_PROX	SS3_PROX:INTRON	EEF2	ENSG00000167658.16	ENST00000309311.7:ENST00000596417.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	47	2	2.9114	4.170795	5.43019	0.00826019	2.60422e-4	0.0813266	0.0148796
chr6	7408705	7408803	2800027	0	+	0.418367	(0.408,0.44]	chr6	263866	30	INTRON	INTRON	RIOK1	ENSG00000124784.9	ENST00000379834.7:ENST00000264874.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	50	2	3.20437	4.170695	5.13702	0.00306596	0.00202889	0.0509893	0.04086
chr2	188241831	188241931	1294939	0	-	0.29	(0.28,0.32]	chr2	135671	129	INTRON	INTRON	LINC01090	ENSG00000231689.3	ENST00000434418.2:ENST00000632331.1:ENST00000415357.1	lncRNA	lncRNA	lncRNA	lncRNA	2	77	2	2.63379	4.17059	5.70739	0.00503861	8.32651e-4	0.0646039	0.0266389
chr21	37388499	37388598	7406439	0	+	0.313131	(0.28,0.32]	chr21	754850	130	INTRON	INTRON	DYRK1A	ENSG00000157540.22	ENST00000646523.1:ENST00000647425.1:ENST00000647188.2:ENST00000647504.1:ENST00000644942.1:ENST00000338785.8:ENST00000643624.1:ENST00000643551.1:ENST00000426672.6:ENST00000398960.7	protein_coding	protein_coding	protein_coding	protein_coding	2	77	2	2.63379	4.17059	5.70739	0.00503861	8.32651e-4	0.0646039	0.0266389
chr3	28290603	28290703	1391038	0	+	0.26	[0,0.28]	chr3	145643	269	INTRON	INTRON	CMC1	ENSG00000187118.14	ENST00000477739.1:ENST00000423894.5:ENST00000466830.6:ENST00000334841.10:ENST00000418849.2:ENST00000396610.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	63	2	3.33854	4.170585	5.00263	0.013055	0.00278022	0.093385	0.0488412
chr9	5689058	5689158	4097904	0	+	0.58	(0.57,1]	chr9	373378	320	INTRON	INTRON	RIC1	ENSG00000107036.12	ENST00000251879.10:ENST00000414202.7:ENST00000418622.7:ENST00000545641.5	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	3.56369	4.170495	4.7773	5.07088e-4	4.26536e-4	0.0202328	0.0189958
chr9	130702588	130702681	4213803	0	+	0.516129	(0.515,0.57]	chr9	386409	4	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	EXOSC2	ENSG00000130713.17	ENST00000491115.7:ENST00000686102.1:ENST00000691284.1:ENST00000685137.1:ENST00000495699.3:ENST00000688967.1:ENST00000691104.1:ENST00000691926.1:ENST00000693435.1:ENST00000688258.1:ENST00000372358.10:ENST00000546165.6:ENST00000372352.7:ENST00000687420.1:ENST00000693011.1:ENST00000687051.1:ENST00000691425.1:ENST00000693610.1:ENST00000692794.1:ENST00000689890.1:ENST00000372351.7:ENST00000685277.1:ENST00000688364.1:ENST00000689662.1:ENST00000430138.7:ENST00000467138.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	63	2	2.45585	4.17038	5.88491	0.00797827	2.75856e-5	0.0798772	0.00430942
chr8	6744963	6745063	3695373	0	+	0.39	(0.378,0.408]	chr8	342858	4	PRIMIRNA	PRIMIRNA:INTRON	AGPAT5:MIR4659A	ENSG00000155189.12:ENSG00000266038.1	ENST00000285518.11:ENST00000523234.5:ENST00000518327.1:ENST00000530716.1:ENST00000580269.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript:primary_miRNA	1	55	2	2.90162	4.17027	5.43892	0.0113157	2.28412e-4	0.0886121	0.0133228
chr5	60950327	60950427	2359271	0	+	0.48	(0.476,0.515]	chr5	227644	45	INTRON	INTRON	NDUFAF2	ENSG00000164182.12	ENST00000678452.1:ENST00000677756.1:ENST00000296597.10:ENST00000511107.1:ENST00000677932.1:ENST00000502658.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	50	2	3.2463	4.170265	5.09423	0.00262374	0.00204588	0.0470772	0.04086
chr12	50547017	50547117	5137570	0	+	0.36	(0.35,0.378]	chr12	484468	414	INTRON	INTRON	DIP2B	ENSG00000066084.13	ENST00000301180.10:ENST00000549620.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	55	2	2.72498	4.17021	5.61544	0.0168499	5.06729e-4	0.11068	0.020816
chr16	89519082	89519181	6420448	0	+	0.50505	(0.476,0.515]	chr16	616212	24	EXON_LNCRNA	EXON_LNCRNA:INTRON	SPG7	ENSG00000197912.16	ENST00000647079.1:ENST00000646303.1:ENST00000643649.1:ENST00000643307.1:ENST00000566371.6:ENST00000644498.1:ENST00000645897.1:ENST00000643668.1:ENST00000644225.1:ENST00000645818.2:ENST00000645977.1:ENST00000645063.1:ENST00000646263.1:ENST00000643724.1:ENST00000644781.1:ENST00000644901.1:ENST00000645042.1:ENST00000646531.1:ENST00000646930.1:ENST00000642436.1:ENST00000644210.1:ENST00000564047.2:ENST00000646589.1:ENST00000268704.7:ENST00000646826.1:ENST00000646716.1:ENST00000643345.1:ENST00000341316.6:ENST00000645533.1:ENST00000646958.1:ENST00000642371.1:ENST00000643105.1:ENST00000645354.1:ENST00000643957.1:ENST00000642334.1:ENST00000647227.1:ENST00000562775.2:ENST00000568151.1:ENST00000646445.1:ENST00000564409.2:ENST00000643954.1:ENST00000646399.1:ENST00000644671.1:ENST00000643178.1:ENST00000611189.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	53	2	3.10264	4.170165	5.23769	0.00543163	5.17244e-4	0.0645052	0.0203753
chr11	9283423	9283523	4909113	0	-	0.35	(0.32,0.35]	chr11	460126	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	TMEM41B	ENSG00000166471.11	ENST00000524543.5:ENST00000528080.6:ENST00000299596.8:ENST00000611268.4:ENST00000533867.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	107	2	2.79085	4.170145	5.54944	9.42646e-4	2.78537e-4	0.0280811	0.0148769
chr1	53246734	53246828	459007	0	-	0.37234	(0.35,0.378]	chr1	55206	9	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	LRP8	ENSG00000157193.18	ENST00000306052.12:ENST00000661457.1:ENST00000668448.1:ENST00000667377.1:ENST00000658277.1:ENST00000653810.1:ENST00000657047.1:ENST00000662198.1:ENST00000657895.1:ENST00000668071.1:ENST00000529670.6:ENST00000480045.6:ENST00000654834.1:ENST00000653217.1:ENST00000669432.1:ENST00000465675.6:ENST00000662802.1:ENST00000371454.6:ENST00000662604.1:ENST00000354412.7:ENST00000658404.1:ENST00000668991.1:ENST00000656486.1:ENST00000654947.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	81	2	1.9755	4.16982	6.36414	0.0398617	1.66911e-5	0.161534	0.00328054
chr13	79542858	79542957	5516580	0	+	0.434343	(0.408,0.44]	chr13	527533	27	INTRON	INTRON	NDFIP2	ENSG00000102471.15	ENST00000612570.4:ENST00000218652.12:ENST00000650134.1:ENST00000487865.5:ENST00000465762.5:ENST00000620924.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	54	2	3.15414	4.1697500000000005	5.18536	0.00469847	6.17381e-4	0.0600108	0.0223951
chr21	37081100	37081199	7404899	0	+	0.383838	(0.378,0.408]	chr21	754521	73	INTRON	INTRON	TTC3	ENSG00000182670.14	ENST00000492275.6:ENST00000418766.6:ENST00000485402.5:ENST00000450533.6:ENST00000438055.5:ENST00000696812.1:ENST00000696811.1:ENST00000463216.6:ENST00000481605.6:ENST00000540756.5:ENST00000494243.5:ENST00000399010.5:ENST00000411496.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	94	2	2.52074	4.169725	5.81871	9.57797e-4	1.62088e-4	0.0284518	0.0116382
chr2	175156549	175156649	1272225	0	-	0.54	(0.515,0.57]	chr2	134482	50	INTRON	INTRON	ATF2	ENSG00000115966.18	ENST00000345739.9:ENST00000426833.7:ENST00000264110.7:ENST00000409635.5:ENST00000428760.5:ENST00000392544.5:ENST00000417080.5:ENST00000456655.5:ENST00000421438.5:ENST00000429579.5:ENST00000415955.5:ENST00000409499.5:ENST00000435231.6:ENST00000437522.5:ENST00000409833.5:ENST00000413123.5:ENST00000445349.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	74	2	2.31902	4.169605000000001	6.02019	0.00493032	1.31473e-5	0.0646039	0.00286967
chr11	118452588	118452688	4872282	0	+	0.44	(0.408,0.44]	chr11	454987	27	INTRON	INTRON	ENSG00000285827:KMT2A	ENSG00000285827.1:ENSG00000118058.24	ENST00000648261.1:ENST00000389506.10:ENST00000534358.8:ENST00000533790.3:ENST00000527869.7:ENST00000649690.2:ENST00000691053.1:ENST00000531904.6:ENST00000649699.1:ENST00000648029.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	50	2	3.14706	4.1695400000000005	5.19202	0.00382411	0.0016671	0.0562562	0.0369207
chr7	96207041	96207140	3575101	0	-	0.414141	(0.408,0.44]	chr7	333048	135	INTRON	INTRON	SLC25A13	ENSG00000004864.14	ENST00000265631.10:ENST00000416240.6:ENST00000472162.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	50	2	3.14706	4.1695400000000005	5.19202	0.00382411	0.0016671	0.0562562	0.0369207
chr9	133258828	133258926	4369864	0	-	0.459184	(0.44,0.476]	chr9	402050	3	INTRON	INTRON	ABO	ENSG00000175164.16	ENST00000679909.1:ENST00000453660.4:ENST00000647353.1:ENST00000611156.4:ENST00000538324.2:ENST00000651471.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	200	2	3.31376	4.16944	5.02512	8.48134e-6	3.16102e-7	0.00210871	3.0658e-4
chr2	71418739	71418839	807918	0	+	0.35	(0.32,0.35]	chr2	90290	1	SS5_PROX	SS5_PROX:INTRON	ZNF638	ENSG00000075292.19	ENST00000409544.5:ENST00000264447.9:ENST00000487638.5:ENST00000494241.5:ENST00000409407.4:ENST00000483421.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	73	2	2.7493	4.169264999999999	5.58923	0.00296357	8.12357e-4	0.0500135	0.0263656
chrX	123645875	123645974	7878173	0	-	0.50505	(0.476,0.515]	chrX	802527	1	INTRON	INTRON	THOC2	ENSG00000125676.20	ENST00000245838.13:ENST00000355725.8:ENST00000491737.5	protein_coding	protein_coding	protein_coding	protein_coding	4	93	2	2.59672	4.169135	5.74155	6.3664e-4	1.47804e-4	0.0228285	0.0111067
chr7	139402647	139402747	3438026	0	+	0.47	(0.44,0.476]	chr7	320352	4	SS5_PROX	SS5_PROX:INTRON	LUC7L2:FMC1-LUC7L2	ENSG00000146963.18:ENSG00000269955.2	ENST00000541170.7:ENST00000541515.3:ENST00000619796.4:ENST00000354926.9:ENST00000456182.5:ENST00000263545.7:ENST00000463912.5:ENST00000498518.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	50	2	3.3111	4.169065	5.02703	0.00278015	0.0020006	0.0469265	0.0412555
chr11	75311263	75311362	4989753	0	-	0.424242	(0.408,0.44]	chr11	471490	47	INTRON	INTRON	ARRB1	ENSG00000137486.17	ENST00000420843.7:ENST00000360025.7:ENST00000524400.5:ENST00000533609.5:ENST00000533255.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	24	2	4.00385	4.168925	4.334	0.0454568	0.011982	0.149888	0.0962115
chr12	68631955	68632055	5161417	0	+	0.42	(0.408,0.44]	chr12	488585	67	INTRON	INTRON	RAP1B	ENSG00000127314.18	ENST00000460800.5:ENST00000393436.9:ENST00000250559.14:ENST00000425247.6:ENST00000501412.2:ENST00000450214.6:ENST00000463493.5:ENST00000537460.5:ENST00000341355.9:ENST00000538283.5:ENST00000541167.5:ENST00000422358.6:ENST00000489473.6:ENST00000545270.5:ENST00000538980.5:ENST00000543393.5:ENST00000542018.5:ENST00000540209.5:ENST00000378985.7:ENST00000453560.6:ENST00000534899.5:ENST00000542145.5:ENST00000539091.5:ENST00000535492.5:ENST00000540781.5:ENST00000485252.6:ENST00000538877.5:ENST00000541386.5:ENST00000543697.5:ENST00000545720.6:ENST00000541216.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	24	2	4.00385	4.168925	4.334	0.0454568	0.011982	0.149888	0.0962115
chr12	110562747	110562847	5410287	0	-	0.43	(0.408,0.44]	chr12	516631	104	INTRON	INTRON	PPTC7	ENSG00000196850.6	ENST00000354300.5	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	4.00385	4.168925	4.334	0.0454568	0.011982	0.149888	0.0962115
chr14	81265720	81265820	5935968	0	-	0.42	(0.408,0.44]	chr14	564180	39	UTR3	UTR3:EXON_MRNA:INTRON	STON2	ENSG00000140022.14	ENST00000553821.3:ENST00000614646.5:ENST00000555447.5:ENST00000649389.1	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	4.00385	4.168925	4.334	0.0454568	0.011982	0.149888	0.0962115
chr16	21911969	21912067	6462396	0	-	0.438776	(0.408,0.44]	chr16	623591	2	INTRON	INTRON	SMG1P4	ENSG00000185710.9	ENST00000523028.5:ENST00000517529.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	24	2	4.00385	4.168925	4.334	0.0454568	0.011982	0.149888	0.0962115
chr2	37103787	37103887	1095857	0	-	0.42	(0.408,0.44]	chr2	117443	47	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	EIF2AK2	ENSG00000055332.19	ENST00000681329.1:ENST00000681507.1:ENST00000681463.1:ENST00000679507.1:ENST00000233057.9:ENST00000679979.1:ENST00000680273.1:ENST00000681516.1:ENST00000647926.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	24	2	4.00385	4.168925	4.334	0.0454568	0.011982	0.149888	0.0962115
chr2	135249050	135249149	1230664	0	-	0.414141	(0.408,0.44]	chr2	131170	103	INTRON	INTRON	ZRANB3	ENSG00000121988.18	ENST00000264159.11:ENST00000401392.5:ENST00000536680.5:ENST00000403017.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	24	2	4.00385	4.168925	4.334	0.0454568	0.011982	0.149888	0.0962115
chr3	154323274	154323373	1843531	0	-	0.434343	(0.408,0.44]	chr3	185479	41	INTRON	INTRON	DHX36	ENSG00000174953.14	ENST00000496811.6:ENST00000308361.10:ENST00000329463.9:ENST00000491011.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	24	2	4.00385	4.168925	4.334	0.0454568	0.011982	0.149888	0.0962115
chr5	73066589	73066686	2389292	0	+	0.43299	(0.408,0.44]	chr5	230615	23	INTRON	INTRON	FCHO2	ENSG00000157107.14	ENST00000430046.7:ENST00000512348.5:ENST00000508431.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	24	2	4.00385	4.168925	4.334	0.0454568	0.011982	0.149888	0.0962115
chr6	158807513	158807613	3253219	0	-	0.42	(0.408,0.44]	chr6	302380	178	INTRON	INTRON	EZR	ENSG00000092820.19	ENST00000337147.11:ENST00000367075.4:ENST00000476189.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	24	2	4.00385	4.168925	4.334	0.0454568	0.011982	0.149888	0.0962115
chr8	30803333	30803432	3933056	0	-	0.434343	(0.408,0.44]	chr8	360326	32	INTRON	INTRON	PPP2CB	ENSG00000104695.13	ENST00000221138.9:ENST00000518564.1:ENST00000518243.5:ENST00000520056.1:ENST00000520500.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	24	2	4.00385	4.168925	4.334	0.0454568	0.011982	0.149888	0.0962115
chr5	95739865	95739964	2431328	0	+	0.383838	(0.378,0.408]	chr5	233646	24	INTRON	INTRON	RHOBTB3	ENSG00000164292.13	ENST00000504949.1:ENST00000506959.5:ENST00000379982.8:ENST00000510623.1:ENST00000502541.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	68	2	2.70298	4.168805	5.63463	0.00325723	3.59226e-4	0.0524329	0.0175484
chr6	30738772	30738870	3078091	0	-	0.357143	(0.35,0.378]	chr6	286529	25	INTRON	INTRON	FLOT1	ENSG00000137312.15	ENST00000376389.8:ENST00000487376.5:ENST00000413165.5:ENST00000476729.5:ENST00000438162.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	110	2	2.50365	4.168635	5.83362	5.68631e-4	2.04087e-4	0.0217398	0.0129859
chr1	10160055	10160153	20423	0	+	0.438776	(0.408,0.44]	chr1	1966	12	INTRON	INTRON	UBE4B	ENSG00000130939.20	ENST00000672724.1:ENST00000253251.12:ENST00000343090.11:ENST00000488228.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	24	2	4.10594	4.16845	4.23096	0.0278028	0.0219367	0.123904	0.123836
chr1	12066947	12067046	26997	0	+	0.424242	(0.408,0.44]	chr1	3232	29	INTRON	INTRON	TNFRSF8	ENSG00000120949.15	ENST00000263932.7:ENST00000417814.3:ENST00000514649.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	24	2	4.10594	4.16845	4.23096	0.0278028	0.0219367	0.123904	0.123836
chr1	45560693	45560792	93089	0	+	0.414141	(0.408,0.44]	chr1	12515	78	INTRON	INTRON	AKR1A1	ENSG00000117448.14	ENST00000372070.7:ENST00000621846.4:ENST00000434299.5:ENST00000351829.9:ENST00000496999.5:ENST00000476957.5:ENST00000481885.5:ENST00000471651.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	24	2	4.10594	4.16845	4.23096	0.0278028	0.0219367	0.123904	0.123836
chr1	87075160	87075259	155203	0	+	0.434343	(0.408,0.44]	chr1	16979	16	INTRON	INTRON	HS2ST1	ENSG00000153936.18	ENST00000370550.10:ENST00000370551.8:ENST00000687893.1:ENST00000693745.1:ENST00000689904.1:ENST00000690674.1:ENST00000591456.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	24	2	4.10594	4.16845	4.23096	0.0278028	0.0219367	0.123904	0.123836
chr1	168232119	168232219	250220	0	+	0.43	(0.408,0.44]	chr1	29743	2	SS5_PROX	SS5_PROX:INTRON	SFT2D2	ENSG00000213064.10	ENST00000471981.1:ENST00000367829.5:ENST00000271375.7:ENST00000630869.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	24	2	4.10594	4.16845	4.23096	0.0278028	0.0219367	0.123904	0.123836
chr11	16527852	16527952	4925564	0	-	0.41	(0.408,0.44]	chr11	461242	511	INTRON	INTRON	SOX6	ENSG00000110693.19	ENST00000530378.5:ENST00000533658.5:ENST00000525835.5:ENST00000524520.5:ENST00000525259.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	0	24	2	4.10594	4.16845	4.23096	0.0278028	0.0219367	0.123904	0.123836
chr11	62871163	62871250	4799479	0	+	0.436782	(0.408,0.44]	chr11	444787	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SLC3A2	ENSG00000168003.18	ENST00000680729.1:ENST00000680002.1:ENST00000681467.1:ENST00000377890.6:ENST00000538084.2:ENST00000681569.1:ENST00000680725.1:ENST00000377891.6:ENST00000377889.6:ENST00000681215.1:ENST00000535296.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	24	2	4.10594	4.16845	4.23096	0.0278028	0.0219367	0.123904	0.123836
chr12	119670326	119670426	5234855	0	+	0.43	(0.408,0.44]	chr12	496681	4	SS5_PROX	SS5_PROX:INTRON	PRKAB1	ENSG00000111725.11	ENST00000541640.5:ENST00000229328.10:ENST00000537400.1:ENST00000630317.1:ENST00000540121.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	24	2	4.10594	4.16845	4.23096	0.0278028	0.0219367	0.123904	0.123836
chr14	36970596	36970696	5875993	0	-	0.43	(0.408,0.44]	chr14	558013	952	INTRON	INTRON	SLC25A21	ENSG00000183032.12	ENST00000331299.6:ENST00000555449.5:ENST00000557611.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	24	2	4.10594	4.16845	4.23096	0.0278028	0.0219367	0.123904	0.123836
chr15	44433594	44433694	6014411	0	+	0.42	(0.408,0.44]	chr15	572914	51	INTRON	INTRON	CTDSPL2	ENSG00000137770.14	ENST00000558791.5:ENST00000260327.9:ENST00000560834.1:ENST00000558966.5:ENST00000559793.5:ENST00000558968.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	24	2	4.10594	4.16845	4.23096	0.0278028	0.0219367	0.123904	0.123836
chr15	64380457	64380557	6205081	0	-	0.43	(0.408,0.44]	chr15	591802	1	SS5_PROX	SS5_PROX:INTRON	ENSG00000259316:PCLAF	ENSG00000259316.12:ENSG00000166803.14	ENST00000634318.1:ENST00000635704.1:ENST00000634529.1:ENST00000635511.1:ENST00000635605.1:ENST00000635593.1:ENST00000635320.1:ENST00000300035.9:ENST00000380258.6:ENST00000559519.5:ENST00000558008.3:ENST00000558043.5:ENST00000560234.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	24	2	4.10594	4.16845	4.23096	0.0278028	0.0219367	0.123904	0.123836
chr15	64633112	64633212	6045816	0	+	0.43	(0.408,0.44]	chr15	575702	97	INTRON	INTRON	ZNF609	ENSG00000180357.10	ENST00000326648.5:ENST00000558680.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	24	2	4.10594	4.16845	4.23096	0.0278028	0.0219367	0.123904	0.123836
chr16	47241894	47241994	6481497	0	-	0.44	(0.408,0.44]	chr16	626969	35	INTRON	INTRON	ITFG1	ENSG00000129636.13	ENST00000568047.5:ENST00000320640.11:ENST00000537184.6:ENST00000542691.5:ENST00000544001.6:ENST00000565262.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	24	2	4.10594	4.16845	4.23096	0.0278028	0.0219367	0.123904	0.123836
chr17	46927536	46927635	6620749	0	+	0.414141	(0.408,0.44]	chr17	645700	27	INTRON	INTRON	GOSR2	ENSG00000108433.17	ENST00000640608.1:ENST00000640792.1:ENST00000640358.1:ENST00000638634.1:ENST00000225567.9:ENST00000623037.2:ENST00000573224.2:ENST00000639985.1:ENST00000576910.7:ENST00000415811.7:ENST00000571658.2:ENST00000639199.1:ENST00000639365.1:ENST00000638892.1:ENST00000640621.1:ENST00000640709.1:ENST00000638838.1:ENST00000638216.1:ENST00000575949.6:ENST00000638579.1:ENST00000638189.1:ENST00000639066.1:ENST00000640051.2:ENST00000638697.1:ENST00000640443.1:ENST00000640269.1:ENST00000640806.1:ENST00000640711.1:ENST00000640007.1:ENST00000638219.1:ENST00000639388.1:ENST00000640495.1:ENST00000638374.1:ENST00000640138.1:ENST00000639287.1:ENST00000571048.1:ENST00000572403.5:ENST00000640068.1:ENST00000570879.2:ENST00000393456.7:ENST00000639031.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	24	2	4.10594	4.16845	4.23096	0.0278028	0.0219367	0.123904	0.123836
chr19	57751605	57751702	7105139	0	+	0.42268	(0.408,0.44]	chr19	713133	3	INTRON	INTRON	ZNF776	ENSG00000152443.13	ENST00000317178.10:ENST00000431353.1:ENST00000451849.1	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	4.10594	4.16845	4.23096	0.0278028	0.0219367	0.123904	0.123836
chr2	9608371	9608471	1064755	0	-	0.43	(0.408,0.44]	chr2	113598	165	INTRON	INTRON	YWHAQ	ENSG00000134308.14	ENST00000238081.8:ENST00000381844.8:ENST00000474715.1:ENST00000446619.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	24	2	4.10594	4.16845	4.23096	0.0278028	0.0219367	0.123904	0.123836
chr2	130430621	130430692	1228092	0	-	0.408451	(0.408,0.44]	chr2	130864	3	INTRON	INTRON	FAR2P2	ENSG00000178162.8	ENST00000413041.5	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	0	24	2	4.10594	4.16845	4.23096	0.0278028	0.0219367	0.123904	0.123836
chr2	134199433	134199533	869659	0	+	0.44	(0.408,0.44]	chr2	97549	788	INTRON	INTRON	MGAT5	ENSG00000152127.9	ENST00000468758.1:ENST00000481801.5:ENST00000409645.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	24	2	4.10594	4.16845	4.23096	0.0278028	0.0219367	0.123904	0.123836
chr20	58393636	58393736	7289589	0	+	0.41	(0.408,0.44]	chr20	741668	29	INTRON	INTRON	VAPB	ENSG00000124164.16	ENST00000475243.6:ENST00000395802.7:ENST00000520497.1:ENST00000265619.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	24	2	4.10594	4.16845	4.23096	0.0278028	0.0219367	0.123904	0.123836
chr21	46477673	46477773	7422688	0	+	0.44	(0.408,0.44]	chr21	756967	181	INTRON	INTRON	DIP2A	ENSG00000160305.18	ENST00000417564.3:ENST00000651436.1:ENST00000400274.5:ENST00000457905.7:ENST00000466639.5:ENST00000435722.7	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	4.10594	4.16845	4.23096	0.0278028	0.0219367	0.123904	0.123836
chr3	136493447	136493547	1825856	0	-	0.44	(0.408,0.44]	chr3	183674	157	INTRON	INTRON	STAG1	ENSG00000118007.13	ENST00000383202.7:ENST00000236698.9:ENST00000434713.6:ENST00000483235.5:ENST00000629124.2:ENST00000487065.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	24	2	4.10594	4.16845	4.23096	0.0278028	0.0219367	0.123904	0.123836
chr5	138854995	138855094	2498333	0	+	0.434343	(0.408,0.44]	chr5	238750	269	INTRON	INTRON	CTNNA1	ENSG00000044115.21	ENST00000627109.2:ENST00000521724.5:ENST00000302763.12:ENST00000518825.5:ENST00000523275.5:ENST00000517534.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	24	2	4.10594	4.16845	4.23096	0.0278028	0.0219367	0.123904	0.123836
chr6	14901154	14901254	3061940	0	-	0.42	(0.408,0.44]	chr6	284639	273	INTRON	INTRON	ENSG00000234261	ENSG00000234261.5	ENST00000629853.2:ENST00000653525.1	lncRNA	lncRNA	lncRNA	lncRNA	0	24	2	4.10594	4.16845	4.23096	0.0278028	0.0219367	0.123904	0.123836
chr6	97274359	97274459	3164687	0	-	0.41	(0.408,0.44]	chr6	295147	9	INTRON	INTRON	MMS22L	ENSG00000146263.12	ENST00000683635.1:ENST00000275053.8:ENST00000369251.6:ENST00000509383.5:ENST00000510018.5:ENST00000508976.5:ENST00000508820.1:ENST00000496119.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	24	2	4.10594	4.16845	4.23096	0.0278028	0.0219367	0.123904	0.123836
chr1	65377015	65377114	136772	0	+	0.464646	(0.44,0.476]	chr1	15376	105	INTRON	INTRON	DNAJC6	ENSG00000116675.16	ENST00000494710.6:ENST00000263441.11:ENST00000395325.7:ENST00000371069.5:ENST00000472787.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	60	2	3.71735	4.168445	4.61954	0.00506805	4.72844e-4	0.0646039	0.0201458
chr5	54017609	54017709	2617980	0	-	0.45	(0.44,0.476]	chr5	248835	1056	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	51	2	2.89047	4.168335	5.4462	0.00955699	5.83686e-4	0.0863913	0.0223753
chr1	20741348	20741447	389394	0	-	0.313131	(0.28,0.32]	chr1	46510	12	UTR3	UTR3:EXON_MRNA	HP1BP3	ENSG00000127483.19	ENST00000438032.6	protein_coding	protein_coding	protein_coding	protein_coding	1	59	2	2.73945	4.1683	5.59715	0.017681	0.00123856	0.11319	0.0322669
chr19	10983379	10983479	7015783	0	+	0.36	(0.35,0.378]	chr19	697182	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	SMARCA4	ENSG00000127616.20	ENST00000644737.1:ENST00000642726.1:ENST00000646484.1:ENST00000643549.1:ENST00000643296.1:ENST00000647230.1:ENST00000642628.1:ENST00000646510.1:ENST00000429416.8:ENST00000644760.1:ENST00000344626.10:ENST00000646693.2:ENST00000645460.1:ENST00000541122.6:ENST00000589677.5:ENST00000444061.8:ENST00000590574.6	protein_coding	protein_coding	protein_coding	protein_coding	2	70	2	2.72093	4.168185	5.61544	0.00314173	5.06729e-4	0.0514466	0.020816
chr9	131165337	131165436	4216039	0	+	0.222222	[0,0.28]	chr9	386613	8	INTRON	INTRON	NUP214	ENSG00000126883.19	ENST00000695497.1:ENST00000695498.1:ENST00000695496.1:ENST00000695495.1:ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000525980.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	69	2	2.54624	4.16808	5.78992	0.0388449	2.85302e-4	0.143072	0.0150568
chr1	47254114	47254213	445492	0	-	0.363636	(0.35,0.378]	chr1	53983	18	INTRON	INTRON	STIL	ENSG00000123473.17	ENST00000360380.7:ENST00000371877.8:ENST00000337817.10:ENST00000682940.1:ENST00000683977.1:ENST00000682977.1:ENST00000396221.6:ENST00000684618.1:ENST00000447475.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	25	2	3.94291	4.16797	4.39303	0.0374229	0.0237246	0.155878	0.118716
chr11	68564832	68564932	4818392	0	+	0.37	(0.35,0.378]	chr11	448982	4	SS5_PROX	SS5_PROX:INTRON	PPP6R3	ENSG00000110075.15	ENST00000534534.5:ENST00000524845.5:ENST00000393800.7:ENST00000265637.8:ENST00000524904.5:ENST00000393801.7:ENST00000265636.9:ENST00000529710.5:ENST00000527403.6:ENST00000534190.5:ENST00000526574.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	25	2	3.94291	4.16797	4.39303	0.0374229	0.0237246	0.155878	0.118716
chr11	71992185	71992281	4824170	0	+	0.375	(0.35,0.378]	chr11	449954	11	INTRON	INTRON	RNF121	ENSG00000137522.18	ENST00000530655.5:ENST00000533380.5:ENST00000393713.7:ENST00000361756.8:ENST00000490867.5:ENST00000526549.5:ENST00000525243.5:ENST00000530137.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	25	2	3.94291	4.16797	4.39303	0.0374229	0.0237246	0.155878	0.118716
chr14	71388895	71388995	5780152	0	+	0.37	(0.35,0.378]	chr14	547506	89	INTRON	INTRON	SIPA1L1	ENSG00000197555.10	ENST00000555989.5:ENST00000553453.5:ENST00000556408.5:ENST00000381232.8:ENST00000554362.5:ENST00000556780.5:ENST00000554126.5:ENST00000555652.5:ENST00000557151.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	25	2	3.94291	4.16797	4.39303	0.0374229	0.0237246	0.155878	0.118716
chr15	28277090	28277189	6123610	0	-	0.353535	(0.35,0.378]	chr15	583381	17	INTRON	INTRON	HERC2	ENSG00000128731.18	ENST00000261609.13:ENST00000564734.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	25	2	3.94291	4.16797	4.39303	0.0374229	0.0237246	0.155878	0.118716
chr17	39437875	39437974	6767021	0	-	0.373737	(0.35,0.378]	chr17	665572	32	INTRON	INTRON	MED1	ENSG00000125686.12	ENST00000394287.7:ENST00000300651.11:ENST00000577831.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	25	2	3.94291	4.16797	4.39303	0.0374229	0.0237246	0.155878	0.118716
chr17	44491058	44491158	6780717	0	-	0.36	(0.35,0.378]	chr17	668697	158	INTRON	INTRON	GPATCH8	ENSG00000186566.13	ENST00000591680.6:ENST00000587228.5:ENST00000585614.1:ENST00000590041.5:ENST00000592746.5:ENST00000586037.5:ENST00000592154.1:ENST00000588554.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	25	2	3.94291	4.16797	4.39303	0.0374229	0.0237246	0.155878	0.118716
chr7	1118558	1118658	3461646	0	-	0.36	(0.35,0.378]	chr7	323589	87	INTRON	INTRON	C7orf50	ENSG00000146540.15	ENST00000357429.10:ENST00000397100.6:ENST00000397098.8:ENST00000488073.1:ENST00000491163.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	25	2	3.94291	4.16797	4.39303	0.0374229	0.0237246	0.155878	0.118716
chr7	107124272	107124370	3377965	0	+	0.377551	(0.35,0.378]	chr7	316258	19	INTRON	INTRON	PRKAR2B	ENSG00000005249.13	ENST00000265717.5:ENST00000393613.6:ENST00000488792.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	25	2	3.94291	4.16797	4.39303	0.0374229	0.0237246	0.155878	0.118716
chr2	200863511	200863600	1310105	0	-	0.617977	(0.57,1]	chr2	137052	4	INTRON	INTRON	CLK1	ENSG00000013441.17	ENST00000321356.9:ENST00000473565.5:ENST00000432425.5:ENST00000409403.6:ENST00000434813.3:ENST00000492793.1:ENST00000481641.1:ENST00000482590.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	13	297	2	4.04683	4.167854999999999	4.28888	7.50157e-11	9.61464e-12	8.34692e-7	2.62299e-7
chr2	167875172	167875272	1258553	0	-	0.54	(0.515,0.57]	chr2	133334	48	INTRON	INTRON	B3GALT1-AS1	ENSG00000235335.3	ENST00000430546.2:ENST00000657553.1:ENST00000670221.1:ENST00000436982.2	lncRNA	lncRNA	lncRNA	lncRNA	1	46	2	3.05839	4.1674500000000005	5.27651	0.00485936	5.11033e-4	0.0640618	0.020816
chr20	44937379	44937476	7278228	0	+	0.525773	(0.515,0.57]	chr20	739994	3	SS5_PROX	SS5_PROX:INTRON	PABPC1L	ENSG00000101104.13	ENST00000255136.8:ENST00000217073.7:ENST00000537323.5:ENST00000217074.9:ENST00000490798.6:ENST00000476056.6:ENST00000674244.1:ENST00000372824.5:ENST00000372819.5:ENST00000674382.1:ENST00000479873.5:ENST00000674318.1:ENST00000217075.7:ENST00000372826.6:ENST00000474208.5:ENST00000489068.1:ENST00000372822.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	84	2	2.63844	4.167095	5.69575	4.34654e-4	7.34886e-5	0.0187509	0.00767614
chr5	95765783	95765881	2431594	0	+	0.55102	(0.515,0.57]	chr5	233672	18	INTRON	INTRON	RHOBTB3	ENSG00000164292.13	ENST00000379982.8	protein_coding	protein_coding	protein_coding	protein_coding	4	83	2	2.31394	4.167065	6.02019	0.00231716	1.31473e-5	0.0442594	0.00286967
chr1	8602002	8602101	371621	0	-	0.333333	(0.32,0.35]	chr1	43521	113	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000400907.6:ENST00000656437.1:ENST00000659924.1:ENST00000480342.5:ENST00000514428.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	25	2	4.06299	4.16706	4.27113	0.0559439	0.0199982	0.165463	0.120668
chr1	155509930	155510030	562363	0	-	0.33	(0.32,0.35]	chr1	67101	271	INTRON	INTRON	ASH1L	ENSG00000116539.14	ENST00000676814.1:ENST00000392403.8:ENST00000368346.7:ENST00000677213.1:ENST00000678117.1:ENST00000679097.1:ENST00000679333.1:ENST00000677042.1:ENST00000678699.1:ENST00000677825.1:ENST00000679133.1:ENST00000548830.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	25	2	4.06299	4.16706	4.27113	0.0559439	0.0199982	0.165463	0.120668
chr1	168059923	168060023	249743	0	+	0.33	(0.32,0.35]	chr1	29648	86	INTRON	INTRON	DCAF6	ENSG00000143164.16	ENST00000432587.6:ENST00000367843.7:ENST00000367840.4:ENST00000312263.10:ENST00000489398.1:ENST00000478668.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	25	2	4.06299	4.16706	4.27113	0.0559439	0.0199982	0.165463	0.120668
chr10	73246587	73246687	4648944	0	-	0.34	(0.32,0.35]	chr10	427695	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DNAJC9	ENSG00000213551.7	ENST00000372950.6	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	4.06299	4.16706	4.27113	0.0559439	0.0199982	0.165463	0.120668
chr10	133306752	133306850	4717661	0	-	0.336735	(0.32,0.35]	chr10	435513	34	INTRON	INTRON	TUBGCP2	ENSG00000130640.15	ENST00000252936.8:ENST00000682123.1:ENST00000683612.1:ENST00000683786.1:ENST00000682515.1:ENST00000682905.1:ENST00000684478.1:ENST00000682161.1:ENST00000682332.1:ENST00000684487.1:ENST00000683673.1:ENST00000682093.1:ENST00000683014.1:ENST00000682631.1:ENST00000683060.1:ENST00000683383.1:ENST00000682990.1:ENST00000417178.7:ENST00000482278.5:ENST00000543663.6:ENST00000683704.1:ENST00000683552.1:ENST00000684421.1:ENST00000424450.2:ENST00000470829.2:ENST00000683031.1:ENST00000487796.2:ENST00000480198.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	25	2	4.06299	4.16706	4.27113	0.0559439	0.0199982	0.165463	0.120668
chr12	103941992	103942081	5208456	0	+	0.325843	(0.32,0.35]	chr12	492953	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HSP90B1	ENSG00000166598.16	ENST00000550595.2:ENST00000681861.1:ENST00000680899.1:ENST00000680391.1:ENST00000680653.1:ENST00000679779.1:ENST00000680281.1:ENST00000681949.1:ENST00000680989.1:ENST00000614327.2:ENST00000680762.1:ENST00000680663.1:ENST00000681172.1:ENST00000681941.1:ENST00000681910.1:ENST00000681704.1:ENST00000299767.10:ENST00000681174.1:ENST00000680370.1:ENST00000679538.1:ENST00000681698.1:ENST00000548462.5:ENST00000680316.1:ENST00000679861.1:ENST00000681245.1:ENST00000680478.1:ENST00000552051.2:ENST00000551983.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	25	2	4.06299	4.16706	4.27113	0.0559439	0.0199982	0.165463	0.120668
chr13	51447717	51447817	5595998	0	-	0.35	(0.32,0.35]	chr13	534843	114	UTR3	UTR3:EXON_MRNA:INTRON	INTS6	ENSG00000102786.15	ENST00000398119.6:ENST00000311234.9:ENST00000469430.5:ENST00000486195.6:ENST00000491189.5:ENST00000491723.5:ENST00000461515.5:ENST00000491997.2:ENST00000488009.1:ENST00000485178.5:ENST00000483288.5:ENST00000442263.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	25	2	4.06299	4.16706	4.27113	0.0559439	0.0199982	0.165463	0.120668
chr14	19063710	19063803	5655032	0	+	0.333333	(0.32,0.35]	chr14	538985	9	INTRON	INTRON	DUXAP9	ENSG00000225210.10	ENST00000549484.5:ENST00000547220.5:ENST00000610585.4:ENST00000621361.4:ENST00000620237.1:ENST00000619938.1:ENST00000644980.1:ENST00000619210.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	0	25	2	4.06299	4.16706	4.27113	0.0559439	0.0199982	0.165463	0.120668
chr17	31168897	31168996	6591876	0	+	0.343434	(0.32,0.35]	chr17	641077	52	INTRON	INTRON	NF1	ENSG00000196712.20	ENST00000696138.1:ENST00000356175.7:ENST00000487476.5:ENST00000691014.1:ENST00000358273.9:ENST00000431387.8:ENST00000579081.5:ENST00000489712.6:ENST00000495910.6:ENST00000490416.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	25	2	4.06299	4.16706	4.27113	0.0559439	0.0199982	0.165463	0.120668
chr17	45467708	45467808	6782971	0	-	0.34	(0.32,0.35]	chr17	669102	1	SS5_PROX	SS5_PROX:INTRON	PLEKHM1	ENSG00000225190.11	ENST00000430334.8:ENST00000579197.5:ENST00000581448.5:ENST00000446609.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	25	2	4.06299	4.16706	4.27113	0.0559439	0.0199982	0.165463	0.120668
chr17	51209013	51209113	6797353	0	-	0.33	(0.32,0.35]	chr17	671088	3	SS5_PROX	SS5_PROX:INTRON	MBTD1	ENSG00000011258.16	ENST00000586178.6:ENST00000415868.5:ENST00000405860.7:ENST00000591270.1:ENST00000376381.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	25	2	4.06299	4.16706	4.27113	0.0559439	0.0199982	0.165463	0.120668
chr18	31912674	31912771	6961091	0	-	0.340206	(0.32,0.35]	chr18	688762	26	INTRON	INTRON	TRAPPC8	ENSG00000153339.15	ENST00000283351.10:ENST00000580104.5:ENST00000582539.5:ENST00000582513.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	25	2	4.06299	4.16706	4.27113	0.0559439	0.0199982	0.165463	0.120668
chr20	35796396	35796496	7263127	0	+	0.35	(0.32,0.35]	chr20	738060	134	INTRON	INTRON	PHF20	ENSG00000025293.17	ENST00000461122.5:ENST00000461405.1:ENST00000374012.8:ENST00000452270.5:ENST00000374000.8:ENST00000339089.10:ENST00000481202.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	25	2	4.06299	4.16706	4.27113	0.0559439	0.0199982	0.165463	0.120668
chr3	33431738	33431838	1651626	0	-	0.35	(0.32,0.35]	chr3	169400	56	INTRON	INTRON	UBP1	ENSG00000153560.12	ENST00000283629.8:ENST00000447368.6:ENST00000283628.9:ENST00000456378.1:ENST00000496310.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	25	2	4.06299	4.16706	4.27113	0.0559439	0.0199982	0.165463	0.120668
chr3	100264716	100264815	1465603	0	+	0.323232	(0.32,0.35]	chr3	153589	28	INTRON	INTRON	TBC1D23	ENSG00000036054.13	ENST00000394144.9:ENST00000485687.5:ENST00000344949.9:ENST00000486274.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	25	2	4.06299	4.16706	4.27113	0.0559439	0.0199982	0.165463	0.120668
chr5	149544683	149544783	2751014	0	-	0.33	(0.32,0.35]	chr5	259082	128	INTRON	INTRON	CSNK1A1	ENSG00000113712.19	ENST00000261798.10:ENST00000377843.8:ENST00000657001.1:ENST00000515768.6:ENST00000606719.6:ENST00000657462.1:ENST00000661952.1:ENST00000504676.5:ENST00000515435.5:ENST00000662268.1:ENST00000657706.1:ENST00000670598.1:ENST00000523203.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	25	2	4.06299	4.16706	4.27113	0.0559439	0.0199982	0.165463	0.120668
chr6	20554268	20554367	2828581	0	+	0.333333	(0.32,0.35]	chr6	265644	52	INTRON	INTRON	CDKAL1	ENSG00000145996.11	ENST00000274695.8:ENST00000613575.4:ENST00000378610.1	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	4.06299	4.16706	4.27113	0.0559439	0.0199982	0.165463	0.120668
chr6	70492777	70492877	2894808	0	+	0.33	(0.32,0.35]	chr6	274004	13	INTRON	INTRON	FAM135A	ENSG00000082269.17	ENST00000505769.5:ENST00000515323.5:ENST00000418814.7:ENST00000457062.6:ENST00000361499.7:ENST00000370479.7:ENST00000194672.11:ENST00000505868.1:ENST00000393299.6:ENST00000425415.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	25	2	4.06299	4.16706	4.27113	0.0559439	0.0199982	0.165463	0.120668
chr7	98939794	98939892	3359892	0	+	0.346939	(0.32,0.35]	chr7	313518	16	INTRON	INTRON	TRRAP	ENSG00000196367.14	ENST00000355540.7:ENST00000359863.8:ENST00000628380.2:ENST00000456197.2:ENST00000446306.7	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	4.06299	4.16706	4.27113	0.0559439	0.0199982	0.165463	0.120668
chr7	135397569	135397668	3647827	0	-	0.343434	(0.32,0.35]	chr7	339143	13	INTRON	INTRON	CNOT4	ENSG00000080802.20	ENST00000541284.6:ENST00000451834.5:ENST00000423368.6:ENST00000361528.8:ENST00000414802.5:ENST00000428680.6:ENST00000315544.6	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	4.06299	4.16706	4.27113	0.0559439	0.0199982	0.165463	0.120668
chr9	131154090	131154190	4215920	0	+	0.34	(0.32,0.35]	chr9	386591	18	INTRON	INTRON	NUP214	ENSG00000126883.19	ENST00000695497.1:ENST00000695498.1:ENST00000695496.1:ENST00000695495.1:ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000651022.1:ENST00000525980.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	25	2	4.06299	4.16706	4.27113	0.0559439	0.0199982	0.165463	0.120668
chr19	57863026	57863126	7106168	0	+	0.54	(0.515,0.57]	chr19	713245	30	UTR3	UTR3:EXON_MRNA	ZNF587	ENSG00000198466.12	ENST00000339656.8:ENST00000419854.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	127	2	3.76946	4.166995	4.56453	1.32384e-5	1.59451e-6	0.00287735	7.59456e-4
chr22	50196640	50196740	7543974	0	+	0.49	(0.476,0.515]	chr22	770950	12	INTRON	INTRON	TRABD	ENSG00000170638.10	ENST00000380909.9:ENST00000303434.8:ENST00000463233.1:ENST00000395827.5:ENST00000395829.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	51	2	3.49411	4.166865	4.83962	0.00480934	9.23453e-4	0.0602209	0.0278392
chr1	109599698	109599797	180679	0	+	0.323232	(0.32,0.35]	chr1	19831	75	UTR3	UTR3:EXON_MRNA	GNAI3	ENSG00000065135.12	ENST00000369851.7	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	4.16186	4.166835	4.17181	0.04531	0.026079	0.149888	0.133676
chr1	179140645	179140745	592187	0	-	0.33	(0.32,0.35]	chr1	71068	66	INTRON	INTRON	ABL2	ENSG00000143322.21	ENST00000502732.6:ENST00000344730.7:ENST00000512653.5:ENST00000367623.8:ENST00000507173.5:ENST00000511413.5:ENST00000504405.5:ENST00000668691.1:ENST00000392043.4:ENST00000509520.5:ENST00000504324.1:ENST00000660584.1:ENST00000508127.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	25	2	4.16186	4.166835	4.17181	0.04531	0.026079	0.149888	0.133676
chr11	68547566	68547666	4818211	0	+	0.35	(0.32,0.35]	chr11	448952	1	SS3_PROX	SS3_PROX:INTRON	PPP6R3	ENSG00000110075.15	ENST00000529907.5:ENST00000534534.5:ENST00000524845.5:ENST00000393800.7:ENST00000265637.8:ENST00000524904.5:ENST00000393801.7:ENST00000265636.9:ENST00000529710.5:ENST00000527403.6:ENST00000525050.5:ENST00000527069.5:ENST00000531244.1:ENST00000529172.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	25	2	4.16186	4.166835	4.17181	0.04531	0.026079	0.149888	0.133676
chr11	77739632	77739732	4995162	0	-	0.33	(0.32,0.35]	chr11	472029	136	INTRON	INTRON	RSF1	ENSG00000048649.14	ENST00000308488.11:ENST00000528095.5:ENST00000534794.1:ENST00000440064.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	25	2	4.16186	4.166835	4.17181	0.04531	0.026079	0.149888	0.133676
chr16	74982307	74982406	6527268	0	-	0.333333	(0.32,0.35]	chr16	632164	33	INTRON	INTRON	WDR59	ENSG00000103091.15	ENST00000262144.11:ENST00000616369.4:ENST00000536050.5:ENST00000568323.5:ENST00000562331.5:ENST00000564859.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	25	2	4.16186	4.166835	4.17181	0.04531	0.026079	0.149888	0.133676
chr17	51005836	51005910	6795847	0	-	0.324324	(0.32,0.35]	chr17	670940	2	SS5_PROX	SS5_PROX:INTRON	SPAG9	ENSG00000008294.22	ENST00000262013.12:ENST00000510283.5:ENST00000505279.5:ENST00000357122.8:ENST00000514613.5:ENST00000505173.5:ENST00000513547.5:ENST00000511795.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	25	2	4.16186	4.166835	4.17181	0.04531	0.026079	0.149888	0.133676
chr18	14103246	14103344	6952332	0	-	0.336735	(0.32,0.35]	chr18	687735	16	UTR3	UTR3:EXON_MRNA:INTRON	ZNF519	ENSG00000175322.12	ENST00000592345.5:ENST00000589203.5:ENST00000587419.5:ENST00000592049.5:ENST00000592411.5:ENST00000591393.1:ENST00000590202.3:ENST00000589498.5:ENST00000624133.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	25	2	4.16186	4.166835	4.17181	0.04531	0.026079	0.149888	0.133676
chr2	152136399	152136498	1245425	0	-	0.333333	(0.32,0.35]	chr2	132194	4	INTRON	INTRON	STAM2	ENSG00000115145.10	ENST00000263904.5:ENST00000482997.5:ENST00000463854.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	25	2	4.16186	4.166835	4.17181	0.04531	0.026079	0.149888	0.133676
chr2	165936424	165936523	1253793	0	-	0.343434	(0.32,0.35]	chr2	132918	35	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	TTC21B	ENSG00000123607.16	ENST00000680888.1:ENST00000680947.1:ENST00000681083.1:ENST00000681024.1:ENST00000680690.1:ENST00000679676.1:ENST00000679967.1:ENST00000679356.1:ENST00000680327.1:ENST00000681502.1:ENST00000681483.1:ENST00000680657.1:ENST00000679931.1:ENST00000681952.1:ENST00000652557.1:ENST00000679799.1:ENST00000681819.1:ENST00000243344.8:ENST00000679840.1:ENST00000680448.1:ENST00000681606.1:ENST00000679671.1:ENST00000464374.5:ENST00000680698.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	25	2	4.16186	4.166835	4.17181	0.04531	0.026079	0.149888	0.133676
chr4	51893832	51893930	1959073	0	+	0.326531	(0.32,0.35]	chr4	196342	16	INTRON	INTRON	DCUN1D4	ENSG00000109184.15	ENST00000509376.5:ENST00000381441.7:ENST00000334635.10:ENST00000507741.5:ENST00000477560.5:ENST00000451288.6:ENST00000510587.5:ENST00000507659.5:ENST00000505634.5:ENST00000510808.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	25	2	4.16186	4.166835	4.17181	0.04531	0.026079	0.149888	0.133676
chr4	105392283	105392382	2215853	0	-	0.333333	(0.32,0.35]	chr4	217214	53	INTRON	INTRON	PPA2	ENSG00000138777.20	ENST00000341695.10:ENST00000348706.9:ENST00000509031.5:ENST00000351450.10:ENST00000354147.7:ENST00000432483.6:ENST00000515567.5:ENST00000513605.5:ENST00000503171.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	25	2	4.16186	4.166835	4.17181	0.04531	0.026079	0.149888	0.133676
chr5	149753067	149753166	2517280	0	+	0.323232	(0.32,0.35]	chr5	240647	126	INTRON	INTRON	PPARGC1B	ENSG00000155846.17	ENST00000360453.8:ENST00000394320.7:ENST00000461780.1:ENST00000309241.10	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	25	2	4.16186	4.166835	4.17181	0.04531	0.026079	0.149888	0.133676
chr6	37860694	37860794	2857442	0	+	0.35	(0.32,0.35]	chr6	270225	403	INTRON	INTRON	ZFAND3	ENSG00000156639.12	ENST00000287218.9:ENST00000373391.6:ENST00000474522.5	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	4.16186	4.166835	4.17181	0.04531	0.026079	0.149888	0.133676
chr6	158786707	158786807	3253007	0	-	0.33	(0.32,0.35]	chr6	302363	2	SS5_PROX	SS5_PROX:INTRON	EZR	ENSG00000092820.19	ENST00000337147.11:ENST00000367075.4:ENST00000476189.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	25	2	4.16186	4.166835	4.17181	0.04531	0.026079	0.149888	0.133676
chr8	30643757	30643857	3932080	0	-	0.35	(0.32,0.35]	chr8	360159	61	INTRON	INTRON	GTF2E2	ENSG00000197265.9	ENST00000355904.9:ENST00000523499.5:ENST00000518599.5:ENST00000518445.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	25	2	4.16186	4.166835	4.17181	0.04531	0.026079	0.149888	0.133676
chr9	93470940	93471040	4158238	0	+	0.34	(0.32,0.35]	chr9	379128	4	SS3_PROX	SS3_PROX:INTRON	FAM120A	ENSG00000048828.17	ENST00000277165.11:ENST00000375389.7:ENST00000446420.2	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	4.16186	4.166835	4.17181	0.04531	0.026079	0.149888	0.133676
chr3	141910960	141911059	1526422	0	+	0.252525	[0,0.28]	chr3	159025	33	INTRON	INTRON	ATP1B3	ENSG00000069849.11	ENST00000475483.5:ENST00000465172.5:ENST00000286371.8:ENST00000466678.5:ENST00000462082.1:ENST00000495216.1:ENST00000482635.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	68	2	2.9385	4.166725	5.39495	0.0142776	0.00133175	0.0963703	0.0335129
chr11	43395063	43395163	4776914	0	+	0.41	(0.408,0.44]	chr11	441711	3	SS3_PROX	SS3_PROX:INTRON	TTC17:ENSG00000254577	ENSG00000052841.15:ENSG00000254577.1	ENST00000039989.9:ENST00000299240.10:ENST00000394183.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	2	110	2	4.03858	4.166684999999999	4.29479	1.05823e-4	1.35098e-5	0.00920724	0.00274251
chr12	104314692	104314789	5210291	0	+	0.360825	(0.35,0.378]	chr12	493232	10	INTRON	INTRON	TXNRD1	ENSG00000198431.17	ENST00000525566.6:ENST00000526266.5:ENST00000503506.6:ENST00000526691.5:ENST00000531691.5:ENST00000526390.5:ENST00000531689.5:ENST00000529546.5:ENST00000529751.1:ENST00000526580.5:ENST00000524698.5:ENST00000527688.5:ENST00000527335.5:ENST00000526950.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	70	2	2.84057	4.166575	5.49258	0.00189462	8.19894e-4	0.0402736	0.0264086
chr1	70416836	70416936	142991	0	+	0.51	(0.476,0.515]	chr1	16065	4	INTRON	INTRON	CTH	ENSG00000116761.12	ENST00000411986.6:ENST00000370938.8:ENST00000464926.1:ENST00000346806.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	53	2	2.8863	4.166415	5.44653	0.0111679	2.03754e-4	0.0877435	0.0124395
chr10	21703800	21703900	4406128	0	+	0.45	(0.44,0.476]	chr10	406537	68	INTRON	INTRON	MLLT10	ENSG00000078403.17	ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000651298.1:ENST00000377059.7:ENST00000651382.1:ENST00000438473.6:ENST00000420525.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	69	2	3.18905	4.166415	5.14378	0.00184943	3.33091e-4	0.0388609	0.0162254
chr2	26977390	26977490	715973	0	+	0.49	(0.476,0.515]	chr2	82691	62	INTRON	INTRON	MAPRE3	ENSG00000084764.12	ENST00000233121.7:ENST00000494788.1:ENST00000405074.7:ENST00000475633.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	51	2	2.87879	4.166345	5.4539	0.00999149	5.16081e-4	0.0879541	0.0208667
chr9	127547461	127547561	4355835	0	-	0.51	(0.476,0.515]	chr9	399847	153	INTRON	INTRON	NIBAN2	ENSG00000136830.12	ENST00000373314.7:ENST00000373312.4:ENST00000478917.1:ENST00000468379.1:ENST00000484348.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	51	2	2.87879	4.166345	5.4539	0.00999149	5.16081e-4	0.0879541	0.0208667
chr11	805776	805855	4889929	0	-	0.56962	(0.515,0.57]	chr11	457939	1	EXON_LNCRNA	EXON_LNCRNA:INTRON	PIDD1	ENSG00000177595.19	ENST00000534525.5:ENST00000534649.2:ENST00000530911.1	protein_coding	retained_intron	protein_coding	retained_intron:nonsense_mediated_decay:processed_transcript	1	48	2	3.2024	4.1660699999999995	5.12974	0.00322022	4.54392e-4	0.0507087	0.0192381
chr4	6784939	6785039	1921610	0	+	0.56	(0.515,0.57]	chr4	192985	17	INTRON	INTRON	KIAA0232	ENSG00000170871.12	ENST00000503278.1:ENST00000508423.1:ENST00000307659.6:ENST00000425103.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	48	2	3.2024	4.1660699999999995	5.12974	0.00322022	4.54392e-4	0.0507087	0.0192381
chr1	26235502	26235601	49497	0	+	0.333333	(0.32,0.35]	chr1	6192	8	INTRON	INTRON	CEP85	ENSG00000130695.16	ENST00000451429.8:ENST00000640292.2:ENST00000252992.8	protein_coding	protein_coding	protein_coding	protein_coding	5	123	2	1.91414	4.16598	6.41782	0.011737	2.73177e-6	0.0894475	0.00105808
chr10	125159556	125159656	4714334	0	-	0.69	(0.57,1]	chr10	434938	3	SS5_PROX	SS5_PROX:INTRON	CTBP2	ENSG00000175029.17	ENST00000337195.9:ENST00000411419.6:ENST00000494626.6:ENST00000460976.5:ENST00000476817.1:ENST00000530884.1:ENST00000467395.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	45	2	3.35736	4.16597	4.97458	2.67728e-4	8.14057e-5	0.0149989	0.00755207
chr1	100116930	100117030	515698	0	-	0.35	(0.32,0.35]	chr1	60466	61	INTRON	INTRON	SASS6	ENSG00000156876.10	ENST00000462159.1:ENST00000287482.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	55	2	3.3721	4.165905	4.95971	0.00663522	0.00182912	0.0703181	0.0396683
chr22	20023293	20023393	7477765	0	+	0.58	(0.57,1]	chr22	762628	16	INTRON	INTRON	TANGO2	ENSG00000183597.16	ENST00000401886.5:ENST00000471707.5:ENST00000432198.5:ENST00000475446.5:ENST00000420290.6:ENST00000432883.5:ENST00000434570.6:ENST00000447208.6:ENST00000456048.5:ENST00000411907.5:ENST00000398042.6:ENST00000399807.7:ENST00000450664.5:ENST00000450019.5:ENST00000327374.9:ENST00000479679.5:ENST00000430807.5:ENST00000401833.5:ENST00000434168.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	62	2	2.74113	4.1658	5.59047	1.93623e-4	5.22506e-6	0.0127226	0.00156931
chr16	89788132	89788231	6544519	0	-	0.454545	(0.44,0.476]	chr16	634547	26	INTRON	INTRON	FANCA	ENSG00000187741.16	ENST00000561667.2:ENST00000389301.8:ENST00000568369.6:ENST00000564475.6:ENST00000696275.1:ENST00000696287.1:ENST00000696286.1:ENST00000696274.1:ENST00000696291.1:ENST00000696276.1:ENST00000567205.2:ENST00000567284.7:ENST00000696277.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	73	2	2.88062	4.165795	5.45097	0.001878	1.90652e-4	0.039073	0.0120089
chr17	36561071	36561171	6602020	0	+	0.3	(0.28,0.32]	chr17	642564	2	SS5_PROX	SS5_PROX:INTRON	GGNBP2	ENSG00000278311.5	ENST00000613102.5:ENST00000617860.4:ENST00000618837.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	57	2	3.1268	4.1657	5.2046	0.00508956	0.00448664	0.0646039	0.0593175
chr2	177453210	177453310	926698	0	+	0.32	(0.28,0.32]	chr2	101828	72	INTRON	INTRON	AGPS	ENSG00000018510.18	ENST00000679459.1:ENST00000637633.2:ENST00000680770.1:ENST00000680705.1:ENST00000681752.1:ENST00000460342.2:ENST00000681565.1:ENST00000680893.1:ENST00000681032.1:ENST00000679421.1:ENST00000680910.1:ENST00000409888.1:ENST00000642466.2:ENST00000264167.11:ENST00000680155.1:ENST00000679478.1:ENST00000681449.1:ENST00000681891.1:ENST00000681028.1:ENST00000679639.1:ENST00000680028.1:ENST00000679994.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	57	2	3.07744	4.16566	5.25388	0.00604536	0.00385849	0.0700813	0.0542786
chr16	29497077	29497174	6470528	0	-	0.226804	[0,0.28]	chr16	625123	11	INTRON	INTRON	ENSG00000288632:NPIPB12	ENSG00000288632.1:ENSG00000169203.17	ENST00000675579.1:ENST00000550665.5:ENST00000551448.5:ENST00000617311.1:ENST00000547235.5:ENST00000550690.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:nonsense_mediated_decay:lncRNA	3	101	2	2.53226	4.16545	5.79864	0.00306159	0.00125481	0.0509893	0.0323608
chr22	23235023	23235122	7483752	0	+	0.444444	(0.44,0.476]	chr22	763541	353	INTRON	INTRON	BCR	ENSG00000186716.21	ENST00000479188.5:ENST00000359540.7:ENST00000305877.13:ENST00000463770.5:ENST00000487679.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	89	2	2.69735	4.1653649999999995	5.63338	0.00125459	7.86121e-5	0.0323608	0.00738014
chr2	113934193	113934278	854692	0	+	0.235294	[0,0.28]	chr2	95926	5	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	ACTR3	ENSG00000115091.12	ENST00000263238.7:ENST00000415792.5:ENST00000446821.5:ENST00000535589.3:ENST00000489779.1:ENST00000484165.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	115	2	2.24136	4.165325	6.08929	0.00497825	4.45295e-4	0.0646039	0.0194896
chr7	75370033	75370132	3337769	0	+	0.424242	(0.408,0.44]	chr7	310752	25	INTRON	INTRON	STAG3L1	ENSG00000205583.14	ENST00000619870.4:ENST00000404291.3	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	2	110	2	4.08856	4.164795	4.24103	8.21424e-5	1.8653e-5	0.00812487	0.00329969
chr20	49687787	49687887	7353367	0	-	0.45	(0.44,0.476]	chr20	749846	307	INTRON	INTRON	B4GALT5	ENSG00000158470.5	ENST00000371711.4	protein_coding	protein_coding	protein_coding	protein_coding	4	91	2	2.35576	4.164645	5.97353	0.00208591	5.52284e-5	0.0424672	0.00651834
chr9	94262432	94262532	4161451	0	+	0.42	(0.408,0.44]	chr9	379439	27	INTRON	INTRON	ZNF169	ENSG00000175787.17	ENST00000395395.7:ENST00000492115.2:ENST00000340911.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	55	2	3.33067	4.1645200000000004	4.99837	0.0024459	0.00131369	0.0445752	0.0333932
chr2	23896070	23896170	1080646	0	-	0.49	(0.476,0.515]	chr2	115372	1	SS3_PROX	SS3_PROX:INTRON	ATAD2B	ENSG00000119778.15	ENST00000238789.10:ENST00000439915.1	protein_coding	protein_coding	protein_coding	protein_coding	1	54	2	2.69967	4.1643	5.62893	0.0195838	8.45697e-5	0.109483	0.00776967
chr7	73554366	73554465	3555293	0	-	0.393939	(0.378,0.408]	chr7	330858	3	INTRON	INTRON	BCL7B	ENSG00000106635.8	ENST00000223368.7:ENST00000411832.5:ENST00000482231.5:ENST00000454871.5:ENST00000463858.5:ENST00000448175.5:ENST00000455335.2:ENST00000464288.5:ENST00000416906.2:ENST00000493592.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	52	2	3.5186	4.16414	4.80968	0.00679828	8.45009e-4	0.0711802	0.0263813
chr8	115549843	115549942	4030467	0	-	0.393939	(0.378,0.408]	chr8	367954	342	INTRON	INTRON	TRPS1	ENSG00000104447.13	ENST00000395715.8:ENST00000640765.1:ENST00000220888.9:ENST00000519076.5:ENST00000520276.5:ENST00000519674.1	protein_coding	protein_coding	protein_coding	protein_coding	1	52	2	3.5186	4.16414	4.80968	0.00679828	8.45009e-4	0.0711802	0.0263813
chr2	151475169	151475268	893896	0	+	0.282828	(0.28,0.32]	chr2	99059	2	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	RIF1	ENSG00000080345.18	ENST00000453091.6:ENST00000428287.6:ENST00000444746.7:ENST00000243326.9:ENST00000430328.6:ENST00000454583.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	57	2	3.02632	4.163925	5.30153	0.0071944	0.00332518	0.0756118	0.0512081
chr2	216115847	216115944	1014408	0	+	0.309278	(0.28,0.32]	chr2	107943	24	INTRON	INTRON	XRCC5	ENSG00000079246.16	ENST00000392133.7:ENST00000429133.5:ENST00000476360.1:ENST00000392132.7:ENST00000417391.1:ENST00000451695.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	57	2	3.02632	4.163925	5.30153	0.0071944	0.00332518	0.0756118	0.0512081
chr12	48697442	48697539	5319372	0	-	0.463918	(0.44,0.476]	chr12	506397	9	INTRON	INTRON	CCNT1	ENSG00000129315.11	ENST00000618666.4:ENST00000261900.8:ENST00000417344.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	82	2	2.1762	4.1638	6.1514	0.0092251	2.2546e-5	0.0855292	0.00386909
chr16	3711549	3711649	6434418	0	-	0.37	(0.35,0.378]	chr16	619383	7	INTRON	INTRON	TRAP1	ENSG00000126602.11	ENST00000246957.10:ENST00000538171.5:ENST00000571804.5:ENST00000574941.5:ENST00000576106.5:ENST00000571011.1:ENST00000570403.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	92	2	2.35402	4.16371	5.9734	0.00596483	2.0866e-5	0.0674604	0.00353198
chr1	246164361	246164461	677276	0	-	0.4	(0.378,0.408]	chr1	79721	681	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000391836.3:ENST00000453676.5:ENST00000462422.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	52	2	2.85854	4.163435	5.46833	0.0107837	7.05018e-4	0.0920575	0.024224
chr2	47784682	47784780	777053	0	+	0.602041	(0.57,1]	chr2	87410	3	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	MSH6	ENSG00000116062.18	ENST00000652107.1:ENST00000445503.5:ENST00000614496.4:ENST00000456246.1:ENST00000234420.11:ENST00000673922.1:ENST00000673637.1:ENST00000493177.1:ENST00000540021.6:ENST00000455383.5:ENST00000538136.1:ENST00000420813.5:ENST00000411819.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	62	2	4.00114	4.16339	4.32564	3.23665e-5	3.96927e-6	0.00453487	0.00143365
chr1	246169457	246169557	677327	0	-	0.4	(0.378,0.408]	chr1	79721	732	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000391836.3:ENST00000453676.5:ENST00000462422.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	116	2	1.70666	4.16335	6.62004	0.0140577	2.78067e-6	0.102916	0.00118413
chr5	43130513	43130612	2349123	0	+	0.30303	(0.28,0.32]	chr5	226661	56	INTRON	INTRON	ZNF131	ENSG00000172262.12	ENST00000515326.5:ENST00000682664.1:ENST00000510026.5:ENST00000504359.1:ENST00000509156.5:ENST00000508259.5:ENST00000507218.5:ENST00000306938.8:ENST00000505606.6:ENST00000509634.5:ENST00000509341.5:ENST00000511736.5:ENST00000509931.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	117	2	2.04207	4.1631	6.28413	0.0121395	1.12598e-5	0.0910127	0.0024806
chr1	173936637	173936736	587162	0	-	0.242424	[0,0.28]	chr1	70649	57	UTR3	UTR3:EXON_MRNA	RC3H1	ENSG00000135870.12	ENST00000367696.7:ENST00000258349.8	protein_coding	protein_coding	protein_coding	protein_coding	3	100	2	2.34586	4.162905	5.97995	0.00631808	6.65031e-4	0.0722266	0.023496
chr8	42402883	42402957	3744075	0	+	0.297297	(0.28,0.32]	chr8	348313	2	SS3_PROX	SS3_PROX:INTRON	VDAC3	ENSG00000078668.14	ENST00000522572.5:ENST00000022615.9:ENST00000521158.5:ENST00000522010.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	132	2	2.3016	4.162695	6.02379	0.00123259	2.44054e-4	0.0326215	0.0144024
chr6	166319824	166319922	3262883	0	-	0.234694	[0,0.28]	chr6	302906	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	SFT2D1	ENSG00000198818.10	ENST00000361731.4:ENST00000487841.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	68	2	2.97616	4.162475000000001	5.34879	0.0128425	0.00157139	0.0926667	0.0365659
chr7	44407552	44407651	3527455	0	-	0.262626	[0,0.28]	chr7	328959	26	INTRON	INTRON	NUDCD3	ENSG00000015676.18	ENST00000355451.8:ENST00000460110.5:ENST00000493613.5:ENST00000472246.5:ENST00000464812.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	68	2	2.97616	4.162475000000001	5.34879	0.0128425	0.00157139	0.0926667	0.0365659
chr9	34186590	34186689	4111344	0	+	0.373737	(0.35,0.378]	chr9	374718	70	INTRON	INTRON	UBAP1	ENSG00000165006.14	ENST00000625521.2:ENST00000379186.8:ENST00000297661.9:ENST00000626262.2	protein_coding	protein_coding	protein_coding	protein_coding	1	58	2	2.60341	4.16246	5.72151	0.0275785	7.69755e-5	0.123904	0.00735438
chr8	41796516	41796615	3939051	0	-	0.383838	(0.378,0.408]	chr8	361127	69	INTRON	INTRON	ANK1	ENSG00000029534.21	ENST00000347528.8:ENST00000265709.13:ENST00000289734.13:ENST00000521407.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	82	2	2.73003	4.162425000000001	5.59482	8.35208e-4	4.23783e-4	0.0263691	0.0189958
chr12	46369912	46370011	5316673	0	-	0.383838	(0.378,0.408]	chr12	505810	22	INTRON	INTRON	SLC38A2	ENSG00000134294.14	ENST00000256689.10:ENST00000549258.5:ENST00000612232.1:ENST00000547252.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	243	2	3.64435	4.16225	4.68015	9.46048e-6	1.95717e-8	0.00236268	5.11219e-5
chr17	40412173	40412258	6768318	0	-	0.282353	(0.28,0.32]	chr17	665981	4	SS3_PROX	SS3_PROX:INTRON	TOP2A	ENSG00000131747.15	ENST00000423485.6	protein_coding	protein_coding	protein_coding	protein_coding	2	77	2	2.84671	4.16225	5.47779	0.00216662	0.00187048	0.0434015	0.0390476
chr5	151791945	151792044	2522008	0	+	0.323232	(0.32,0.35]	chr5	241325	10	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	G3BP1	ENSG00000145907.16	ENST00000678070.1:ENST00000678964.1:ENST00000678925.1:ENST00000394123.7:ENST00000676978.1:ENST00000679289.1:ENST00000677493.1:ENST00000676644.1:ENST00000677757.1:ENST00000522761.6:ENST00000676827.1:ENST00000520177.6:ENST00000676634.1:ENST00000678854.1:ENST00000677602.1:ENST00000676911.1:ENST00000356245.8:ENST00000678646.1:ENST00000677381.1:ENST00000678904.1:ENST00000678910.1:ENST00000678101.1:ENST00000677105.1:ENST00000676813.1:ENST00000522367.6:ENST00000517947.5:ENST00000507878.7:ENST00000678369.1:ENST00000677433.1:ENST00000678564.1:ENST00000677923.1:ENST00000677323.1:ENST00000522666.1:ENST00000679057.1:ENST00000678750.1:ENST00000677687.1:ENST00000678372.1:ENST00000677211.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	60	2	2.6321	4.162085	5.69207	0.0268	1.29349e-4	0.123349	0.00979769
chr19	16653534	16653606	7150721	0	-	0.444444	(0.44,0.476]	chr19	722454	1	SS5_PROX	SS5_PROX:INTRON	SMIM7	ENSG00000214046.9	ENST00000465250.6:ENST00000481671.6:ENST00000594662.5:ENST00000597781.5:ENST00000598278.5:ENST00000593409.5:ENST00000487803.5:ENST00000627144.2:ENST00000487416.7:ENST00000593404.5:ENST00000597711.5:ENST00000599310.5:ENST00000397349.6:ENST00000602194.5:ENST00000600740.5:ENST00000461488.5:ENST00000463051.5:ENST00000358726.6:ENST00000594507.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	53	2	3.71727	4.16187	4.60647	0.0102339	3.2089e-4	0.0850389	0.0159645
chr4	51914274	51914372	1959290	0	+	0.234694	[0,0.28]	chr4	196379	8	UTR3	UTR3:EXON_MRNA	DCUN1D4	ENSG00000109184.15	ENST00000509376.5:ENST00000381441.7:ENST00000334635.10:ENST00000477560.5:ENST00000451288.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	83	2	2.6958	4.161865000000001	5.62793	0.00456758	0.0022037	0.0622215	0.0417893
chr12	131935223	131935322	5250065	0	+	0.343434	(0.32,0.35]	chr12	499261	4	INTRON	INTRON	PUS1	ENSG00000177192.14	ENST00000443358.6:ENST00000322060.9:ENST00000376649.8:ENST00000542167.2:ENST00000538037.5:ENST00000535067.5:ENST00000537484.1	protein_coding	protein_coding	protein_coding	protein_coding	2	81	2	2.75463	4.16185	5.56907	0.00387748	2.27532e-4	0.0543578	0.0133228
chr1	39157564	39157664	75412	0	+	0.4	(0.378,0.408]	chr1	9693	515	INTRON	INTRON	MACF1	ENSG00000127603.32	ENST00000361689.7:ENST00000689911.1:ENST00000567887.5:ENST00000372915.8:ENST00000472385.2:ENST00000693209.1:ENST00000524432.5:ENST00000467673.5:ENST00000688212.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	25	2	3.82294	4.16175	4.50056	0.044228	0.015974	0.162255	0.101453
chr1	50833249	50833349	450985	0	-	0.39	(0.378,0.408]	chr1	54261	312	INTRON	INTRON	FAF1	ENSG00000185104.21	ENST00000396153.7:ENST00000487898.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	25	2	3.82294	4.16175	4.50056	0.044228	0.015974	0.162255	0.101453
chr10	68466967	68467060	4639720	0	-	0.387097	(0.378,0.408]	chr10	426722	8	INTRON	INTRON	DNA2	ENSG00000138346.15	ENST00000358410.8:ENST00000551118.6:ENST00000399179.6:ENST00000399180.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	25	2	3.82294	4.16175	4.50056	0.044228	0.015974	0.162255	0.101453
chr13	45174000	45174099	5478813	0	+	0.393939	(0.378,0.408]	chr13	524950	218	INTRON	INTRON	GTF2F2	ENSG00000188342.12	ENST00000340473.8	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	3.82294	4.16175	4.50056	0.044228	0.015974	0.162255	0.101453
chr15	28639858	28639958	5988427	0	+	0.4	(0.378,0.408]	chr15	569302	2	SS3_PROX	SS3_PROX:INTRON	HERC2P9	ENSG00000206149.11	ENST00000689985.1:ENST00000529624.5:ENST00000524476.5:ENST00000529353.1	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript:transcribed_unprocessed_pseudogene	0	25	2	3.82294	4.16175	4.50056	0.044228	0.015974	0.162255	0.101453
chr17	44186304	44186385	6779023	0	-	0.395062	(0.378,0.408]	chr17	668275	4	SS5_PROX	SS5_PROX:INTRON	ASB16-AS1	ENSG00000267080.7	ENST00000588785.6:ENST00000585457.6:ENST00000591166.1:ENST00000667684.1:ENST00000669052.1:ENST00000656516.1:ENST00000667107.1:ENST00000592897.1	lncRNA	lncRNA	lncRNA	lncRNA	0	25	2	3.82294	4.16175	4.50056	0.044228	0.015974	0.162255	0.101453
chr4	110143694	110143794	2227185	0	-	0.39	(0.378,0.408]	chr4	218024	377	INTRON	INTRON	ELOVL6	ENSG00000170522.10	ENST00000394607.7:ENST00000302274.8:ENST00000514184.5:ENST00000506625.5:ENST00000506461.1:ENST00000503885.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	25	2	3.82294	4.16175	4.50056	0.044228	0.015974	0.162255	0.101453
chr8	139870593	139870693	4069444	0	-	0.38	(0.378,0.408]	chr8	370001	645	INTRON	INTRON	TRAPPC9	ENSG00000167632.18	ENST00000648948.2:ENST00000438773.4:ENST00000520857.5:ENST00000521667.5:ENST00000522504.5:ENST00000519482.1:ENST00000524162.5:ENST00000523777.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	25	2	3.82294	4.16175	4.50056	0.044228	0.015974	0.162255	0.101453
chrX	27214553	27214653	7775813	0	-	0.4	(0.378,0.408]	chrX	794817	275	INTRON	INTRON	ENSG00000228933	ENSG00000228933.8	ENST00000422048.5:ENST00000669376.1	lncRNA	lncRNA	lncRNA	lncRNA	0	25	2	3.82294	4.16175	4.50056	0.044228	0.015974	0.162255	0.101453
chr1	90995062	90995162	502258	0	-	0.33	(0.32,0.35]	chr1	59504	123	INTRON	INTRON	ZNF644	ENSG00000122482.22	ENST00000370440.5:ENST00000337393.10:ENST00000347275.9:ENST00000361321.5:ENST00000467231.5:ENST00000498303.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	80	2	2.63115	4.16161	5.69207	0.00608073	1.29349e-4	0.0676501	0.00979769
chr6	36595803	36595894	2854426	0	+	0.373626	(0.35,0.378]	chr6	269770	7	INTRON	INTRON	SRSF3	ENSG00000112081.17	ENST00000613941.4:ENST00000373715.11:ENST00000620242.1:ENST00000339436.11:ENST00000477442.6:ENST00000620941.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	126	2	2.95612	4.1614249999999995	5.3667299999999996	3.99274e-4	1.78515e-4	0.0179401	0.0121697
chr5	308495	308595	2312992	0	+	0.51	(0.476,0.515]	chr5	223726	4	EXON_MRNA	EXON_MRNA:INTRON	PDCD6	ENSG00000249915.9	ENST00000614778.4:ENST00000618970.4:ENST00000513582.5:ENST00000264933.9:ENST00000505221.5:ENST00000507528.5:ENST00000505526.1:ENST00000507473.1:ENST00000511482.1:ENST00000512466.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	50	2	3.01197	4.161275	5.31058	0.00633162	9.15544e-4	0.0722266	0.0278396
chr7	106778620	106778717	3376105	0	+	0.484536	(0.476,0.515]	chr7	316134	5	INTRON	INTRON	LINC02577	ENSG00000228742.11	ENST00000650196.1:ENST00000658697.1:ENST00000490162.3:ENST00000602761.2:ENST00000659396.1:ENST00000659665.1:ENST00000655590.1:ENST00000470135.5	lncRNA	lncRNA	lncRNA	lncRNA	1	50	2	3.01197	4.161275	5.31058	0.00633162	9.15544e-4	0.0722266	0.0278396
chr3	177022122	177022221	1870648	0	-	0.323232	(0.32,0.35]	chr3	187269	29	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TBL1XR1	ENSG00000177565.18	ENST00000636864.1:ENST00000457928.7:ENST00000430069.5:ENST00000637659.1:ENST00000474363.1:ENST00000673974.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	101	2	2.05666	4.161265	6.26587	0.00840213	4.61806e-5	0.0824581	0.00588447
chr5	159188333	159188432	2758974	0	-	0.414141	(0.408,0.44]	chr5	260356	59	INTRON	INTRON	RNF145	ENSG00000145860.12	ENST00000424310.7:ENST00000519865.5:ENST00000274542.6:ENST00000611185.4:ENST00000521606.6:ENST00000518802.5:ENST00000520638.1:ENST00000520548.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	50	2	3.36378	4.1609750000000005	4.95817	0.00372419	0.0016048	0.0535094	0.0367961
chr7	111387370	111387470	3622356	0	-	0.3	(0.28,0.32]	chr7	337093	4235	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	63	2	3.12332	4.16087	5.19842	0.00698537	0.00152333	0.0718189	0.0360297
chr21	10339818	10339913	7427419	0	-	0.326316	(0.32,0.35]	chr21	757675	9	INTRON	INTRON	ENSG00000277693	ENSG00000277693.2	ENST00000622592.1:ENST00000616952.1:ENST00000667012.1	lncRNA	lncRNA	lncRNA	lncRNA	8	148	2	1.29183	4.160645000000001	7.02946	0.0438084	8.68339e-7	0.162255	5.74603e-4
chr17	73217913	73218012	6835072	0	-	0.444444	(0.44,0.476]	chr17	675246	48	INTRON	INTRON	FAM104A	ENSG00000133193.13	ENST00000403627.7:ENST00000405159.8:ENST00000583178.5:ENST00000580032.1:ENST00000581110.1:ENST00000579872.1:ENST00000583024.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	80	2	2.34775	4.16064	5.97353	0.00466011	5.52284e-5	0.0629753	0.00651834
chr2	175102683	175102783	1271672	0	-	0.46	(0.44,0.476]	chr2	134410	47	INTRON	INTRON	ATF2	ENSG00000115966.18	ENST00000345739.9:ENST00000426833.7:ENST00000264110.7:ENST00000409437.5:ENST00000409635.5:ENST00000435004.6:ENST00000428760.5:ENST00000392544.5:ENST00000417080.5:ENST00000456655.5:ENST00000421438.5:ENST00000429579.5:ENST00000415955.5:ENST00000409499.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	80	2	2.34775	4.16064	5.97353	0.00466011	5.52284e-5	0.0629753	0.00651834
chr5	10412702	10412797	2318261	0	+	0.421053	(0.408,0.44]	chr5	224714	8	INTRON	INTRON	MARCHF6	ENSG00000145495.16	ENST00000274140.10:ENST00000449913.6:ENST00000511802.5:ENST00000503788.5:ENST00000510792.1:ENST00000512449.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	50	2	3.02513	4.160625	5.29612	0.0059965	0.00113523	0.0700606	0.0307488
chr5	154768879	154768979	2527133	0	+	0.45	(0.44,0.476]	chr5	241610	110	INTRON	INTRON	LARP1	ENSG00000155506.19	ENST00000687700.1:ENST00000336314.9:ENST00000690816.1:ENST00000518297.6:ENST00000517616.5:ENST00000518892.1:ENST00000521577.1:ENST00000519931.5:ENST00000524248.5:ENST00000685946.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	91	2	2.44562	4.160625	5.87563	0.00135452	8.84961e-5	0.0339121	0.00842626
chr8	55888693	55888793	3754423	0	+	0.44	(0.408,0.44]	chr8	349249	82	INTRON	INTRON	LYN	ENSG00000254087.8	ENST00000519728.6:ENST00000520220.6	protein_coding	protein_coding	protein_coding	protein_coding	1	50	2	3.02513	4.160625	5.29612	0.0059965	0.00113523	0.0700606	0.0307488
chr13	52430764	52430864	5599132	0	-	0.29	(0.28,0.32]	chr13	535333	15	INTRON	INTRON	VPS36	ENSG00000136100.14	ENST00000650274.1:ENST00000611132.4:ENST00000378060.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	92	2	2.4468	4.16052	5.87424	0.0037095	4.43011e-4	0.0561833	0.0194241
chr6	160105775	160105874	3024407	0	+	0.454545	(0.44,0.476]	chr6	282288	8	UTR3	UTR3:EXON_MRNA:INTRON	IGF2R	ENSG00000197081.16	ENST00000676781.1:ENST00000677704.1:ENST00000356956.6:ENST00000650503.1:ENST00000677628.1:ENST00000569097.2:ENST00000475584.1:ENST00000678224.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	53	2	2.9195	4.16051	5.40152	0.0102021	2.39829e-4	0.0850389	0.0136403
chr11	59606299	59606398	4954513	0	-	0.373737	(0.35,0.378]	chr11	465227	41	INTRON	INTRON	OSBP	ENSG00000110048.12	ENST00000263847.6	protein_coding	protein_coding	protein_coding	protein_coding	1	52	2	3.16371	4.16047	5.15723	0.00383956	0.00272706	0.0562562	0.0467523
chr5	34197100	34197200	2600057	0	-	0.25	[0,0.28]	chr5	247057	77	INTRON	INTRON	GUSBP18	ENSG00000215158.9	ENST00000507274.1:ENST00000508395.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	1	63	2	3.3753	4.160455000000001	4.94561	0.0150263	0.00242466	0.0994339	0.0454587
chr13	95124699	95124799	5638087	0	-	0.43	(0.408,0.44]	chr13	537056	83	INTRON	INTRON	ABCC4	ENSG00000125257.16	ENST00000645237.2:ENST00000643051.1:ENST00000643842.1:ENST00000646439.1:ENST00000644880.1:ENST00000643816.1:ENST00000536256.3:ENST00000643556.1:ENST00000629385.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	72	2	2.45003	4.16025	5.87047	0.00990006	2.24671e-5	0.0838372	0.0036973
chr7	23364172	23364271	3502597	0	-	0.50505	(0.476,0.515]	chr7	326877	11	INTRON	INTRON	IGF2BP3	ENSG00000136231.14	ENST00000258729.8:ENST00000421467.6:ENST00000468263.5:ENST00000492771.5:ENST00000479504.5:ENST00000466809.6:ENST00000491719.5:ENST00000465058.5:ENST00000469723.5:ENST00000474105.5:ENST00000476938.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	53	2	3.19975	4.160235	5.12072	0.00383299	8.42139e-4	0.0542786	0.0263691
chr16	90138092	90138192	6424256	0	+	0.43	(0.408,0.44]	chr16	617209	2	INTRON	INTRON	FAM157C	ENSG00000260528.6	ENST00000568070.1	lncRNA	lncRNA	lncRNA	lncRNA	1	62	2	3.78937	4.160125	4.53088	0.00669275	3.51772e-4	0.0738715	0.0174637
chr17	61791003	61791102	6808202	0	-	0.282828	(0.28,0.32]	chr17	672569	62	INTRON	INTRON	BRIP1	ENSG00000136492.10	ENST00000259008.7:ENST00000682755.1:ENST00000682453.1:ENST00000683039.1:ENST00000682989.1:ENST00000682589.1:ENST00000683235.1:ENST00000682477.1:ENST00000684584.1:ENST00000577598.5:ENST00000682066.1:ENST00000584322.2:ENST00000683381.1:ENST00000579028.2:ENST00000682611.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	58	2	2.80157	4.160125	5.51868	0.0147132	0.00162747	0.106558	0.0367966
chr11	13678218	13678318	4742401	0	+	0.39	(0.378,0.408]	chr11	439155	82	INTRON	INTRON	FAR1	ENSG00000197601.13	ENST00000354817.8:ENST00000532701.1	protein_coding	protein_coding	protein_coding	protein_coding	3	89	2	2.13797	4.1599900000000005	6.18201	0.0124882	4.51847e-6	0.0923444	0.00143615
chr20	64007410	64007510	7301649	0	+	0.58	(0.57,1]	chr20	743216	58	INTRON	INTRON	PRPF6	ENSG00000101161.8	ENST00000266079.5	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	3.82801	4.15954	4.49107	0.00220544	9.41714e-5	0.0417893	0.00813008
chr2	73219355	73219451	808205	0	+	0.510417	(0.476,0.515]	chr2	90366	4	SS5_PROX	SS5_PROX:INTRON	SMYD5	ENSG00000135632.12	ENST00000413491.5:ENST00000258100.8:ENST00000389501.9:ENST00000629411.2:ENST00000443900.1:ENST00000474652.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	110	2	4.02209	4.15945	4.29681	6.68973e-5	2.44502e-5	0.00677892	0.00406051
chr1	55183026	55183126	465581	0	-	0.39	(0.378,0.408]	chr1	56290	45	INTRON	INTRON	USP24	ENSG00000162402.14	ENST00000294383.7	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	4.10661	4.159435	4.21226	0.0399023	0.0177403	0.143072	0.11319
chr1	151635895	151635995	225959	0	+	0.39	(0.378,0.408]	chr1	25862	211	INTRON	INTRON	SNX27	ENSG00000143376.14	ENST00000642376.1:ENST00000368843.8:ENST00000458013.7:ENST00000368841.7:ENST00000642479.1:ENST00000642349.1:ENST00000643179.1:ENST00000643814.1:ENST00000642582.1:ENST00000644970.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	24	2	4.10661	4.159435	4.21226	0.0399023	0.0177403	0.143072	0.11319
chr10	26798039	26798139	4583870	0	-	0.4	(0.378,0.408]	chr10	422397	204	INTRON	INTRON	ABI1	ENSG00000136754.18	ENST00000376138.7:ENST00000376166.5:ENST00000376160.5:ENST00000376139.6:ENST00000376142.6:ENST00000359188.8:ENST00000376170.8:ENST00000536334.5:ENST00000490841.6:ENST00000376137.8:ENST00000376140.4:ENST00000346832.10:ENST00000473481.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	24	2	4.10661	4.159435	4.21226	0.0399023	0.0177403	0.143072	0.11319
chr11	9139012	9139106	4907771	0	-	0.393617	(0.378,0.408]	chr11	459984	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	DENND5A	ENSG00000184014.9	ENST00000328194.8:ENST00000529977.5:ENST00000681203.1:ENST00000530780.2:ENST00000680358.1:ENST00000679999.1:ENST00000679458.1:ENST00000531747.2:ENST00000680470.1:ENST00000680599.1:ENST00000680554.1:ENST00000679745.1:ENST00000679926.1:ENST00000679773.1:ENST00000680252.1:ENST00000525784.6:ENST00000681425.1:ENST00000681158.1:ENST00000679460.1:ENST00000681371.1:ENST00000680791.1:ENST00000679568.1:ENST00000679446.1:ENST00000681639.1:ENST00000680294.1:ENST00000680742.1:ENST00000680885.1:ENST00000680576.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	24	2	4.10661	4.159435	4.21226	0.0399023	0.0177403	0.143072	0.11319
chr11	78310453	78310553	4999311	0	-	0.39	(0.378,0.408]	chr11	472456	292	INTRON	INTRON	GAB2	ENSG00000033327.13	ENST00000361507.5:ENST00000340149.6:ENST00000526030.1:ENST00000528886.5:ENST00000530915.1:ENST00000534823.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	24	2	4.10661	4.159435	4.21226	0.0399023	0.0177403	0.143072	0.11319
chr13	19981366	19981466	5452656	0	+	0.38	(0.378,0.408]	chr13	522446	109	INTRON	INTRON	ZMYM2	ENSG00000121741.17	ENST00000382881.7:ENST00000382874.6:ENST00000610343.5:ENST00000382871.3:ENST00000620447.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	24	2	4.10661	4.159435	4.21226	0.0399023	0.0177403	0.143072	0.11319
chr14	60962928	60963028	5739012	0	+	0.39	(0.378,0.408]	chr14	544921	827	INTRON	INTRON	MNAT1	ENSG00000020426.11	ENST00000261245.9:ENST00000539616.6:ENST00000554002.5:ENST00000557134.1	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	4.10661	4.159435	4.21226	0.0399023	0.0177403	0.143072	0.11319
chr15	42870110	42870210	6158496	0	-	0.4	(0.378,0.408]	chr15	586287	122	INTRON	INTRON	TTBK2	ENSG00000128881.18	ENST00000267890.11:ENST00000567840.5:ENST00000567274.5:ENST00000564431.5:ENST00000562880.5:ENST00000566931.1:ENST00000567485.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	24	2	4.10661	4.159435	4.21226	0.0399023	0.0177403	0.143072	0.11319
chr17	63813754	63813854	6661384	0	+	0.39	(0.378,0.408]	chr17	650030	3	SS5_PROX	SS5_PROX:INTRON	DDX42	ENSG00000198231.14	ENST00000578681.5:ENST00000583590.5:ENST00000389924.7:ENST00000359353.9:ENST00000584010.5:ENST00000578593.1:ENST00000584951.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	24	2	4.10661	4.159435	4.21226	0.0399023	0.0177403	0.143072	0.11319
chr18	46227858	46227957	6899622	0	+	0.393939	(0.378,0.408]	chr18	683614	88	INTRON	INTRON	C18orf25	ENSG00000152242.11	ENST00000588730.1:ENST00000615052.5:ENST00000619301.4:ENST00000615553.1	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	4.10661	4.159435	4.21226	0.0399023	0.0177403	0.143072	0.11319
chr2	187049257	187049357	944473	0	+	0.38	(0.378,0.408]	chr2	103476	455	INTRON	INTRON	CALCRL-AS1	ENSG00000224063.6	ENST00000453517.5:ENST00000412276.6	lncRNA	lncRNA	lncRNA	lncRNA	0	24	2	4.10661	4.159435	4.21226	0.0399023	0.0177403	0.143072	0.11319
chr3	170094345	170094444	1860938	0	-	0.393939	(0.378,0.408]	chr3	186581	69	UTR3	UTR3:EXON_MRNA:INTRON	PHC3	ENSG00000173889.16	ENST00000484068.5:ENST00000495893.7	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	4.10661	4.159435	4.21226	0.0399023	0.0177403	0.143072	0.11319
chr4	122990673	122990773	2036315	0	+	0.39	(0.378,0.408]	chr4	202354	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	SPATA5	ENSG00000145375.9	ENST00000675612.1:ENST00000274008.5:ENST00000674886.1:ENST00000422835.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	24	2	4.10661	4.159435	4.21226	0.0399023	0.0177403	0.143072	0.11319
chr7	32732281	32732380	3304226	0	+	0.40404	(0.378,0.408]	chr7	306857	29	INTRON	INTRON	ZNRF2P1	ENSG00000237004.4	ENST00000650302.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	0	24	2	4.10661	4.159435	4.21226	0.0399023	0.0177403	0.143072	0.11319
chr7	111470045	111470145	3623187	0	-	0.39	(0.378,0.408]	chr7	337108	773	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000452895.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	4.10661	4.159435	4.21226	0.0399023	0.0177403	0.143072	0.11319
chrX	155925956	155926055	7741248	0	+	0.383838	(0.378,0.408]	chrX	792648	57	INTRON	INTRON	VAMP7	ENSG00000124333.16	ENST00000286448.12:ENST00000479687.6:ENST00000488344.6:ENST00000463317.6:ENST00000262640.11:ENST00000460621.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	24	2	4.10661	4.159435	4.21226	0.0399023	0.0177403	0.143072	0.11319
chr3	156554236	156554281	1844509	0	-	0.377778	(0.35,0.378]	chr3	185604	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SSR3	ENSG00000114850.7	ENST00000265044.7:ENST00000467789.5:ENST00000476217.5:ENST00000463503.5:ENST00000467733.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	52	2	3.10863	4.159405	5.21018	0.00470896	0.00228003	0.0631419	0.0426265
chr2	111484740	111484839	1211708	0	-	0.555556	(0.515,0.57]	chr2	128939	43	INTRON	INTRON	MIR4435-2HG	ENSG00000172965.17	ENST00000645030.2:ENST00000642191.1:ENST00000673798.1:ENST00000645051.2:ENST00000673649.1:ENST00000669658.1:ENST00000669917.1:ENST00000661559.1:ENST00000653687.1:ENST00000667670.1:ENST00000609220.2:ENST00000656760.1:ENST00000609902.6:ENST00000666683.1:ENST00000674070.1:ENST00000662335.1:ENST00000664422.1:ENST00000673775.1:ENST00000674092.1:ENST00000673958.1:ENST00000658936.1:ENST00000662635.1:ENST00000666204.1:ENST00000659458.1:ENST00000664443.1:ENST00000670295.1:ENST00000661655.1:ENST00000666390.1:ENST00000659079.1:ENST00000660442.1:ENST00000664009.1:ENST00000439362.6:ENST00000654473.1:ENST00000664999.1:ENST00000673728.1:ENST00000659791.1:ENST00000666144.1:ENST00000659933.1:ENST00000670715.1:ENST00000653568.1:ENST00000643013.1:ENST00000673866.1:ENST00000443467.6:ENST00000669875.1:ENST00000673653.1:ENST00000673988.1:ENST00000661945.1:ENST00000669515.1:ENST00000431385.6:ENST00000656416.1:ENST00000674037.1:ENST00000432818.5:ENST00000674013.1:ENST00000444301.5:ENST00000673964.1:ENST00000673845.1:ENST00000673756.1:ENST00000673960.1:ENST00000673804.1:ENST00000673632.1:ENST00000453478.2:ENST00000673937.1:ENST00000673654.1:ENST00000409569.2:ENST00000674087.1:ENST00000419736.5:ENST00000673840.1:ENST00000674045.1:ENST00000643766.1:ENST00000308604.5:ENST00000604981.5:ENST00000673894.1:ENST00000441075.1:ENST00000673878.1	lncRNA	lncRNA	lncRNA	lncRNA	4	85	2	2.03368	4.15929	6.2849	0.00803127	2.79922e-6	0.0803474	0.00118618
chr1	21731681	21731777	396340	0	-	0.489583	(0.476,0.515]	chr1	47293	15	INTRON	INTRON	USP48	ENSG00000090686.16	ENST00000400301.5:ENST00000308271.14:ENST00000529637.5:ENST00000526044.5:ENST00000534705.5:ENST00000421625.6:ENST00000374730.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	24	2	3.97201	4.159245	4.34648	0.030904	0.0193566	0.143385	0.108861
chr1	47340011	47340111	97636	0	+	0.5	(0.476,0.515]	chr1	13138	55	INTRON	INTRON	CMPK1	ENSG00000162368.14	ENST00000371873.10:ENST00000371871.8:ENST00000471289.2:ENST00000450808.2:ENST00000371870.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	24	2	3.97201	4.159245	4.34648	0.030904	0.0193566	0.143385	0.108861
chr1	230114028	230114128	334547	0	+	0.5	(0.476,0.515]	chr1	38930	221	INTRON	INTRON	GALNT2	ENSG00000143641.10	ENST00000494106.1:ENST00000366672.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	24	2	3.97201	4.159245	4.34648	0.030904	0.0193566	0.143385	0.108861
chr10	45914186	45914286	4608078	0	-	0.5	(0.476,0.515]	chr10	424473	31	INTRON	INTRON	PARGP1	ENSG00000239883.9	ENST00000688192.1:ENST00000686367.1:ENST00000693310.1:ENST00000417555.2:ENST00000687844.1:ENST00000687550.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	24	2	3.97201	4.159245	4.34648	0.030904	0.0193566	0.143385	0.108861
chr11	14658449	14658549	4743763	0	+	0.51	(0.476,0.515]	chr11	439279	130	INTRON	INTRON	PDE3B	ENSG00000152270.9	ENST00000282096.9:ENST00000455098.2:ENST00000534317.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	24	2	3.97201	4.159245	4.34648	0.030904	0.0193566	0.143385	0.108861
chr11	119129567	119129664	4874794	0	+	0.494845	(0.476,0.515]	chr11	455639	21	INTRON	INTRON	HINFP	ENSG00000172273.13	ENST00000350777.7:ENST00000529354.1:ENST00000531360.5:ENST00000529988.5:ENST00000527354.5:ENST00000527410.3:ENST00000532312.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	24	2	3.97201	4.159245	4.34648	0.030904	0.0193566	0.143385	0.108861
chr14	39116405	39116505	5699851	0	+	0.51	(0.476,0.515]	chr14	541814	11	INTRON	INTRON	GEMIN2	ENSG00000092208.19	ENST00000525153.6:ENST00000250379.13:ENST00000412033.7:ENST00000396249.7:ENST00000650481.1:ENST00000531684.6:ENST00000308317.12:ENST00000534684.7:ENST00000525430.1:ENST00000527381.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	24	2	3.97201	4.159245	4.34648	0.030904	0.0193566	0.143385	0.108861
chr16	70115528	70115626	6383443	0	+	0.479592	(0.476,0.515]	chr16	613452	2	INTRON	INTRON	PDPR	ENSG00000090857.14	ENST00000288050.9:ENST00000561920.5:ENST00000568530.5:ENST00000398122.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	24	2	3.97201	4.159245	4.34648	0.030904	0.0193566	0.143385	0.108861
chr16	89355067	89355166	6542228	0	-	0.515152	(0.476,0.515]	chr16	634215	114	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000647238.1:ENST00000644045.1:ENST00000643147.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	24	2	3.97201	4.159245	4.34648	0.030904	0.0193566	0.143385	0.108861
chr19	5926331	5926426	7125070	0	-	0.494737	(0.476,0.515]	chr19	717318	2	INTRON	INTRON	RANBP3	ENSG00000031823.14	ENST00000340578.10:ENST00000439268.6:ENST00000592771.5:ENST00000586344.5:ENST00000591092.5:ENST00000034275.12:ENST00000587479.2:ENST00000587411.5:ENST00000592621.5:ENST00000590623.5:ENST00000591736.5:ENST00000593025.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	24	2	3.97201	4.159245	4.34648	0.030904	0.0193566	0.143385	0.108861
chr19	36064260	36064360	7056692	0	+	0.5	(0.476,0.515]	chr19	704371	17	INTRON	INTRON	WDR62	ENSG00000075702.19	ENST00000680489.1:ENST00000378860.8:ENST00000401500.7:ENST00000680564.1:ENST00000680590.1:ENST00000679682.1:ENST00000679714.1:ENST00000680403.1:ENST00000680359.1:ENST00000644764.2:ENST00000680321.1:ENST00000681542.1:ENST00000427823.3:ENST00000589953.2:ENST00000681809.1:ENST00000679757.1:ENST00000680806.1:ENST00000679858.1:ENST00000681625.1:ENST00000587391.6:ENST00000270301.12	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	24	2	3.97201	4.159245	4.34648	0.030904	0.0193566	0.143385	0.108861
chr21	46653547	46653646	7423865	0	+	0.50505	(0.476,0.515]	chr21	757215	7	INTRON	INTRON	PRMT2	ENSG00000160310.19	ENST00000451211.6:ENST00000458387.6:ENST00000397638.6:ENST00000291705.11:ENST00000397637.5:ENST00000355680.8:ENST00000440086.5:ENST00000482508.5:ENST00000481861.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	24	2	3.97201	4.159245	4.34648	0.030904	0.0193566	0.143385	0.108861
chr22	31770861	31770960	7505447	0	+	0.515152	(0.476,0.515]	chr22	765883	12	INTRON	INTRON	DEPDC5	ENSG00000100150.20	ENST00000535622.6:ENST00000642974.1:ENST00000645693.1:ENST00000645711.1:ENST00000644331.1:ENST00000645560.1:ENST00000437411.6:ENST00000433147.2:ENST00000645755.1:ENST00000400246.7:ENST00000644162.1:ENST00000646755.1:ENST00000382112.8:ENST00000400248.7:ENST00000647438.1:ENST00000642771.1:ENST00000646515.1:ENST00000456178.6:ENST00000643751.2:ENST00000646969.1:ENST00000642696.1:ENST00000647343.1:ENST00000642684.1:ENST00000651528.2:ENST00000400242.8:ENST00000645015.1:ENST00000646998.1:ENST00000643166.1:ENST00000645494.1:ENST00000646465.1:ENST00000645564.1:ENST00000643395.1:ENST00000400249.7:ENST00000382111.6:ENST00000645967.1:ENST00000645407.1:ENST00000458532.2:ENST00000645785.1:ENST00000642551.1:ENST00000469974.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	24	2	3.97201	4.159245	4.34648	0.030904	0.0193566	0.143385	0.108861
chr3	47109898	47109997	1681055	0	-	0.50505	(0.476,0.515]	chr3	171593	34	INTRON	INTRON	SETD2	ENSG00000181555.22	ENST00000691544.1:ENST00000638947.2:ENST00000686876.1:ENST00000431180.5:ENST00000409792.4:ENST00000330022.11:ENST00000686773.1:ENST00000685005.1:ENST00000690461.1:ENST00000685505.1:ENST00000692883.1:ENST00000693321.1:ENST00000688290.1:ENST00000691902.1:ENST00000690157.1:ENST00000692362.1:ENST00000445387.5:ENST00000685399.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	24	2	3.97201	4.159245	4.34648	0.030904	0.0193566	0.143385	0.108861
chr7	45012640	45012740	3316035	0	+	0.5	(0.476,0.515]	chr7	308173	119	INTRON	INTRON	CCM2	ENSG00000136280.17	ENST00000461377.5:ENST00000544363.5:ENST00000541586.5:ENST00000478582.5:ENST00000258781.11:ENST00000488727.5:ENST00000648329.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	24	2	3.97201	4.159245	4.34648	0.030904	0.0193566	0.143385	0.108861
chr8	119824096	119824196	4039980	0	-	0.51	(0.476,0.515]	chr8	368406	42	INTRON	INTRON	TAF2	ENSG00000064313.13	ENST00000378164.7:ENST00000685503.1:ENST00000690808.1:ENST00000692707.1:ENST00000685202.1:ENST00000688645.1:ENST00000685684.1:ENST00000689399.1:ENST00000685876.1:ENST00000689341.1:ENST00000691057.1:ENST00000686098.1:ENST00000690922.1:ENST00000685663.1:ENST00000692518.1:ENST00000688037.1:ENST00000691237.1:ENST00000684862.1:ENST00000685755.1:ENST00000691880.1:ENST00000523904.2:ENST00000689919.1:ENST00000685824.1:ENST00000685993.1:ENST00000692829.1:ENST00000692916.1:ENST00000686879.1:ENST00000685235.1:ENST00000690144.1:ENST00000689164.1:ENST00000691847.1:ENST00000688215.1:ENST00000690031.1:ENST00000689867.1:ENST00000689873.1:ENST00000521007.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	24	2	3.97201	4.159245	4.34648	0.030904	0.0193566	0.143385	0.108861
chr21	7058448	7058548	7365315	0	+	0.3	(0.28,0.32]	chr21	751699	90	INTRON	INTRON	ENSG00000277067	ENSG00000277067.4	ENST00000623095.3:ENST00000622911.1:ENST00000621909.4:ENST00000623394.3:ENST00000624310.1	lncRNA	lncRNA	lncRNA	lncRNA	1	62	2	2.91851	4.159065	5.39962	0.0130672	7.06751e-4	0.093385	0.0241881
chr1	47357397	47357497	97810	0	+	0.35	(0.32,0.35]	chr1	13138	229	INTRON	INTRON	CMPK1	ENSG00000162368.14	ENST00000371873.10:ENST00000371871.8:ENST00000471289.2:ENST00000450808.2:ENST00000371870.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	25	2	3.94529	4.15899	4.37269	0.0693433	0.0154102	0.184298	0.108569
chr1	100408222	100408322	173187	0	+	0.34	(0.32,0.35]	chr1	18824	170	INTRON	INTRON	CDC14A	ENSG00000079335.20	ENST00000646665.1:ENST00000644844.1:ENST00000635056.2:ENST00000647005.1:ENST00000647203.1:ENST00000644676.1:ENST00000361544.11:ENST00000370124.8:ENST00000336454.5:ENST00000644813.1:ENST00000455467.6:ENST00000646563.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	25	2	3.94529	4.15899	4.37269	0.0693433	0.0154102	0.184298	0.108569
chr11	12679857	12679957	4739632	0	+	0.33	(0.32,0.35]	chr11	439061	39	INTRON	INTRON	TEAD1	ENSG00000187079.20	ENST00000527636.7:ENST00000527376.3:ENST00000334310.10:ENST00000527575.6	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	3.94529	4.15899	4.37269	0.0693433	0.0154102	0.184298	0.108569
chr12	116162203	116162303	5424391	0	-	0.34	(0.32,0.35]	chr12	518263	503	INTRON	INTRON	MED13L	ENSG00000123066.9	ENST00000281928.9:ENST00000650226.1:ENST00000548743.2:ENST00000647567.1:ENST00000551197.2	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	3.94529	4.15899	4.37269	0.0693433	0.0154102	0.184298	0.108569
chr15	34944287	34944357	6134915	0	-	0.328571	(0.32,0.35]	chr15	584598	1	CDS	CDS:EXON_MRNA	AQR	ENSG00000021776.11	ENST00000156471.10:ENST00000543879.6:ENST00000560117.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	25	2	3.94529	4.15899	4.37269	0.0693433	0.0154102	0.184298	0.108569
chr17	60213080	60213180	6804058	0	-	0.33	(0.32,0.35]	chr17	672246	1	SS5_PROX	SS5_PROX:INTRON	USP32	ENSG00000170832.13	ENST00000300896.9:ENST00000592339.5:ENST00000590133.5	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	3.94529	4.15899	4.37269	0.0693433	0.0154102	0.184298	0.108569
chr17	68450127	68450227	6826599	0	-	0.34	(0.32,0.35]	chr17	674738	18	INTRON	INTRON	WIPI1	ENSG00000070540.13	ENST00000262139.10:ENST00000589459.5:ENST00000589316.5:ENST00000546360.5:ENST00000586815.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	25	2	3.94529	4.15899	4.37269	0.0693433	0.0154102	0.184298	0.108569
chr2	171078545	171078644	1263271	0	-	0.343434	(0.32,0.35]	chr2	133896	117	INTRON	INTRON	TLK1	ENSG00000198586.14	ENST00000431350.7:ENST00000360843.7:ENST00000359766.7:ENST00000521943.5:ENST00000409443.6:ENST00000413010.5:ENST00000486857.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	25	2	3.94529	4.15899	4.37269	0.0693433	0.0154102	0.184298	0.108569
chr2	189453170	189453267	952741	0	+	0.329897	(0.32,0.35]	chr2	103647	9	INTRON	INTRON	WDR75	ENSG00000115368.10	ENST00000436347.5:ENST00000472286.5:ENST00000314761.9:ENST00000427960.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	25	2	3.94529	4.15899	4.37269	0.0693433	0.0154102	0.184298	0.108569
chr2	201120392	201120492	981572	0	+	0.33	(0.32,0.35]	chr2	105369	11	INTRON	INTRON	CFLAR	ENSG00000003402.21	ENST00000443227.5:ENST00000309955.8:ENST00000341222.10:ENST00000341582.10:ENST00000342795.9:ENST00000395148.6:ENST00000441224.5:ENST00000433445.1:ENST00000423241.6:ENST00000439154.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	25	2	3.94529	4.15899	4.37269	0.0693433	0.0154102	0.184298	0.108569
chr22	17899748	17899848	7549414	0	-	0.34	(0.32,0.35]	chr22	771723	2	SS3_PROX	SS3_PROX:INTRON	MICAL3	ENSG00000243156.9	ENST00000441493.7:ENST00000672019.1:ENST00000400561.6:ENST00000495076.5:ENST00000414725.6:ENST00000383094.7:ENST00000585038.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	25	2	3.94529	4.15899	4.37269	0.0693433	0.0154102	0.184298	0.108569
chr5	66024550	66024650	2371839	0	+	0.34	(0.32,0.35]	chr5	228539	1	SS5_PROX	SS5_PROX:INTRON	ERBIN	ENSG00000112851.15	ENST00000380943.6:ENST00000416865.6:ENST00000380935.5:ENST00000284037.10:ENST00000380938.6:ENST00000511297.5:ENST00000506030.5:ENST00000508515.1	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	3.94529	4.15899	4.37269	0.0693433	0.0154102	0.184298	0.108569
chr5	177328570	177328670	2777368	0	-	0.35	(0.32,0.35]	chr5	261667	104	INTRON	INTRON	LMAN2	ENSG00000169223.16	ENST00000694903.1	protein_coding	processed_transcript	protein_coding	processed_transcript	0	25	2	3.94529	4.15899	4.37269	0.0693433	0.0154102	0.184298	0.108569
chr6	125080736	125080835	2952671	0	+	0.323232	(0.32,0.35]	chr6	277735	35	INTRON	INTRON	RNF217	ENSG00000146373.17	ENST00000521654.7:ENST00000560949.5:ENST00000519565.5:ENST00000368414.6:ENST00000359704.2:ENST00000368415.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	25	2	3.94529	4.15899	4.37269	0.0693433	0.0154102	0.184298	0.108569
chr7	73488296	73488395	3554755	0	-	0.343434	(0.32,0.35]	chr7	330783	94	INTRON	INTRON	BAZ1B	ENSG00000009954.11	ENST00000339594.9:ENST00000404251.1	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	3.94529	4.15899	4.37269	0.0693433	0.0154102	0.184298	0.108569
chr7	86928605	86928704	3564108	0	-	0.323232	(0.32,0.35]	chr7	332145	13	INTRON	INTRON	ELAPOR2	ENSG00000164659.15	ENST00000450689.7:ENST00000444627.5:ENST00000394714.6:ENST00000416314.5:ENST00000423294.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	25	2	3.94529	4.15899	4.37269	0.0693433	0.0154102	0.184298	0.108569
chr7	110877893	110877993	3617256	0	-	0.33	(0.32,0.35]	chr7	337078	1522	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000487733.5:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	25	2	3.94529	4.15899	4.37269	0.0693433	0.0154102	0.184298	0.108569
chr19	1836943	1837043	7113716	0	-	0.58	(0.57,1]	chr19	714891	57	INTRON	INTRON	REXO1	ENSG00000079313.15	ENST00000170168.9:ENST00000587524.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	35	2	2.91889	4.158775	5.39866	0.00719009	2.7267e-5	0.0756118	0.00430583
chr5	308102	308196	2312988	0	+	0.606383	(0.57,1]	chr5	223725	10	INTRON	INTRON	PDCD6	ENSG00000249915.9	ENST00000614778.4:ENST00000618970.4:ENST00000513582.5:ENST00000264933.9:ENST00000505221.5:ENST00000507528.5:ENST00000505526.1:ENST00000507473.1:ENST00000511482.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	35	2	2.91889	4.158775	5.39866	0.00719009	2.7267e-5	0.0756118	0.00430583
chr22	20851889	20851989	7559615	0	-	0.34	(0.32,0.35]	chr22	773216	128	INTRON	INTRON	PI4KA	ENSG00000241973.11	ENST00000255882.11:ENST00000485963.5:ENST00000449120.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	54	2	3.13277	4.15846	5.18415	0.00458313	0.00333629	0.0622676	0.0512081
chr1	78003090	78003189	148808	0	+	0.323232	(0.32,0.35]	chr1	16580	99	INTRON	INTRON	DNAJB4	ENSG00000162616.9	ENST00000487931.1:ENST00000477671.2:ENST00000484662.1:ENST00000426517.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	25	2	4.04364	4.15832	4.273	0.0368357	0.034181	0.146815	0.138959
chr10	87910159	87910259	4483399	0	+	0.33	(0.32,0.35]	chr10	412570	157	INTRON	INTRON	PTEN	ENSG00000171862.12	ENST00000688308.1:ENST00000693560.1:ENST00000371953.8:ENST00000688158.1:ENST00000686459.1:ENST00000688922.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	25	2	4.04364	4.15832	4.273	0.0368357	0.034181	0.146815	0.138959
chr11	123740736	123740836	5047377	0	-	0.35	(0.32,0.35]	chr11	476215	2	SS3_PROX	SS3_PROX:INTRON	ZNF202	ENSG00000166261.11	ENST00000530393.6:ENST00000336139.8:ENST00000529691.1:ENST00000533463.5:ENST00000528306.5:ENST00000529250.5:ENST00000526252.5:ENST00000530944.1:ENST00000525391.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	25	2	4.04364	4.15832	4.273	0.0368357	0.034181	0.146815	0.138959
chr12	105163433	105163521	5215236	0	+	0.329545	(0.32,0.35]	chr12	493553	2	INTRON	INTRON	WASHC4	ENSG00000136051.15	ENST00000550053.5:ENST00000332180.10:ENST00000620430.5:ENST00000547171.1:ENST00000550036.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	25	2	4.04364	4.15832	4.273	0.0368357	0.034181	0.146815	0.138959
chr15	44429994	44430094	6014375	0	+	0.35	(0.32,0.35]	chr15	572914	15	INTRON	INTRON	CTDSPL2	ENSG00000137770.14	ENST00000558791.5:ENST00000260327.9:ENST00000560834.1:ENST00000558966.5:ENST00000559793.5:ENST00000558968.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	25	2	4.04364	4.15832	4.273	0.0368357	0.034181	0.146815	0.138959
chr18	68697652	68697745	6985184	0	-	0.322581	(0.32,0.35]	chr18	691280	4	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TMX3	ENSG00000166479.10	ENST00000299608.7:ENST00000564631.5:ENST00000569053.5:ENST00000443099.6:ENST00000562706.5:ENST00000565918.5:ENST00000564008.5:ENST00000580785.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	25	2	4.04364	4.15832	4.273	0.0368357	0.034181	0.146815	0.138959
chr19	11005259	11005357	7016021	0	+	0.336735	(0.32,0.35]	chr19	697252	15	INTRON	INTRON	SMARCA4	ENSG00000127616.20	ENST00000644737.1:ENST00000642726.1:ENST00000646484.1:ENST00000643549.1:ENST00000643296.1:ENST00000647230.1:ENST00000642628.1:ENST00000646510.1:ENST00000429416.8:ENST00000344626.10:ENST00000646693.2:ENST00000645460.1:ENST00000541122.6:ENST00000589677.5:ENST00000444061.8:ENST00000590574.6:ENST00000591545.6:ENST00000643995.1:ENST00000644327.1:ENST00000644065.1:ENST00000644963.1:ENST00000643208.1:ENST00000645061.1:ENST00000642350.1:ENST00000644290.1:ENST00000647268.1:ENST00000643857.1:ENST00000644267.1:ENST00000646183.1:ENST00000646746.1:ENST00000643534.1:ENST00000646513.1:ENST00000647011.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	25	2	4.04364	4.15832	4.273	0.0368357	0.034181	0.146815	0.138959
chr19	23749922	23750022	7164080	0	-	0.35	(0.32,0.35]	chr19	724060	42	INTRON	INTRON	ZNF681	ENSG00000196172.9	ENST00000402377.3:ENST00000528059.1:ENST00000531570.1	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	4.04364	4.15832	4.273	0.0368357	0.034181	0.146815	0.138959
chr19	52938263	52938362	7209204	0	-	0.333333	(0.32,0.35]	chr19	731747	85	INTRON	INTRON	ZNF321P:ZNF816-ZNF321P	ENSG00000213801.4:ENSG00000221874.4	ENST00000313956.4:ENST00000391777.3	protein_coding	protein_coding	protein_coding:transcribed_processed_pseudogene	protein_coding:processed_transcript	0	25	2	4.04364	4.15832	4.273	0.0368357	0.034181	0.146815	0.138959
chr3	4352645	4352745	1607294	0	-	0.35	(0.32,0.35]	chr3	166055	2835	INTRON	INTRON	SUMF1	ENSG00000144455.14	ENST00000448413.5	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	0	25	2	4.04364	4.15832	4.273	0.0368357	0.034181	0.146815	0.138959
chr5	1616007	1616107	2566120	0	-	0.34	(0.32,0.35]	chr5	245807	129	INTRON	INTRON	PDCD6P1	ENSG00000188002.11	ENST00000507841.5:ENST00000512335.5:ENST00000692393.1:ENST00000507290.5:ENST00000690809.1:ENST00000688433.1:ENST00000507505.5:ENST00000691115.1:ENST00000502273.7:ENST00000522848.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	25	2	4.04364	4.15832	4.273	0.0368357	0.034181	0.146815	0.138959
chr5	136490140	136490239	2493643	0	+	0.343434	(0.32,0.35]	chr5	238200	229	INTRON	INTRON	ENSG00000249803	ENSG00000249803.6	ENST00000653158.1:ENST00000446720.3:ENST00000665110.1:ENST00000511165.6:ENST00000666378.1:ENST00000657590.1:ENST00000658501.1:ENST00000660537.1:ENST00000659712.1	lncRNA	lncRNA	lncRNA	lncRNA	0	25	2	4.04364	4.15832	4.273	0.0368357	0.034181	0.146815	0.138959
chr6	129605576	129605676	3217756	0	-	0.35	(0.32,0.35]	chr6	299078	3	SS5_PROX	SS5_PROX:INTRON	ARHGAP18	ENSG00000146376.11	ENST00000368149.3	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	4.04364	4.15832	4.273	0.0368357	0.034181	0.146815	0.138959
chr7	152844651	152844750	3451378	0	+	0.333333	(0.32,0.35]	chr7	322567	192	INTRON	INTRON	ACTR3B	ENSG00000133627.18	ENST00000377776.7:ENST00000256001.13:ENST00000397282.2:ENST00000479402.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	25	2	4.04364	4.15832	4.273	0.0368357	0.034181	0.146815	0.138959
chr15	22946111	22946208	6119777	0	-	0.525773	(0.515,0.57]	chr15	582654	8	INTRON	INTRON	CYFIP1	ENSG00000273749.5	ENST00000617928.5:ENST00000610365.4:ENST00000621036.4:ENST00000613006.4:ENST00000611832.4:ENST00000619037.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	46	2	2.98677	4.15817	5.32957	0.00632549	4.06834e-4	0.0722266	0.0185763
chr16	70115130	70115230	6383439	0	+	0.56	(0.515,0.57]	chr16	613451	2	SS5_PROX	SS5_PROX:INTRON	PDPR	ENSG00000090857.14	ENST00000288050.9:ENST00000561920.5:ENST00000568530.5:ENST00000398122.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	78	2	2.70352	4.158005	5.61249	9.70997e-4	4.24748e-5	0.0283239	0.00526976
chr1	2241527	2241626	2298	0	+	0.515152	(0.476,0.515]	chr1	553	85	INTRON	INTRON	SKI	ENSG00000157933.10	ENST00000378536.5:ENST00000508416.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	68	2	2.43242	4.157895	5.88337	0.0091895	7.59355e-5	0.0855292	0.00777694
chr7	2028230	2028329	3464878	0	-	0.575758	(0.57,1]	chr7	324024	132	INTRON	INTRON	MAD1L1	ENSG00000002822.16	ENST00000406869.5:ENST00000399654.6:ENST00000402746.5:ENST00000265854.12:ENST00000438959.5:ENST00000444373.6:ENST00000421113.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	52	2	2.91666	4.15766	5.39866	2.13552e-4	2.7267e-5	0.0128246	0.00430583
chr1	23087305	23087404	398195	0	-	0.444444	(0.44,0.476]	chr1	47782	34	UTR3	UTR3:EXON_MRNA	LUZP1	ENSG00000169641.14	ENST00000302291.8	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	3.97626	4.1576249999999995	4.33899	0.0300538	0.0206616	0.142135	0.110999
chr1	110380736	110380835	182760	0	+	0.444444	(0.44,0.476]	chr1	20259	79	INTRON	INTRON	LAMTOR5-AS1	ENSG00000224699.10	ENST00000626572.2	lncRNA	lncRNA	lncRNA	lncRNA	0	24	2	3.97626	4.1576249999999995	4.33899	0.0300538	0.0206616	0.142135	0.110999
chr1	165864773	165864873	244121	0	+	0.46	(0.44,0.476]	chr1	29139	365	INTRON	INTRON	UCK2	ENSG00000143179.16	ENST00000367879.9:ENST00000642653.1	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	3.97626	4.1576249999999995	4.33899	0.0300538	0.0206616	0.142135	0.110999
chr1	183489957	183490057	273682	0	+	0.46	(0.44,0.476]	chr1	32019	157	INTRON	INTRON	SMG7	ENSG00000116698.22	ENST00000440812.7:ENST00000367537.7:ENST00000688051.1:ENST00000685780.1:ENST00000508461.5:ENST00000347615.6:ENST00000419169.5:ENST00000444547.6:ENST00000507469.5:ENST00000515829.6:ENST00000367538.1:ENST00000502375.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	24	2	3.97626	4.1576249999999995	4.33899	0.0300538	0.0206616	0.142135	0.110999
chr11	68925298	68925396	4819241	0	+	0.44898	(0.44,0.476]	chr11	449187	71	INTRON	INTRON	IGHMBP2	ENSG00000132740.10	ENST00000675615.1:ENST00000676228.1:ENST00000255078.8:ENST00000676173.1:ENST00000674955.1:ENST00000675118.1:ENST00000675305.1:ENST00000675648.1:ENST00000674775.1:ENST00000675684.1:ENST00000675493.1:ENST00000674745.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	24	2	3.97626	4.1576249999999995	4.33899	0.0300538	0.0206616	0.142135	0.110999
chr12	113164964	113165053	5417993	0	-	0.47191	(0.44,0.476]	chr12	517742	3	INTRON	INTRON	DDX54	ENSG00000123064.13	ENST00000306014.10:ENST00000314045.11:ENST00000546898.1:ENST00000550016.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	24	2	3.97626	4.1576249999999995	4.33899	0.0300538	0.0206616	0.142135	0.110999
chr15	28223303	28223401	6123036	0	-	0.469388	(0.44,0.476]	chr15	583234	7	INTRON	INTRON	HERC2	ENSG00000128731.18	ENST00000261609.13:ENST00000569335.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	24	2	3.97626	4.1576249999999995	4.33899	0.0300538	0.0206616	0.142135	0.110999
chr17	47147349	47147448	6788957	0	-	0.444444	(0.44,0.476]	chr17	669573	30	INTRON	INTRON	CDC27	ENSG00000004897.12	ENST00000066544.8:ENST00000531206.5:ENST00000533415.5:ENST00000527547.5:ENST00000526866.5:ENST00000525495.6:ENST00000574304.5:ENST00000575830.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	24	2	3.97626	4.1576249999999995	4.33899	0.0300538	0.0206616	0.142135	0.110999
chr17	62528410	62528509	6653382	0	+	0.474747	(0.44,0.476]	chr17	649344	37	INTRON	INTRON	TLK2	ENSG00000146872.19	ENST00000582809.5:ENST00000684213.1:ENST00000583843.5:ENST00000582195.6:ENST00000682085.1:ENST00000580705.5:ENST00000346027.10:ENST00000326270.13:ENST00000682203.1:ENST00000343388.11:ENST00000683536.1:ENST00000684440.1:ENST00000684772.1:ENST00000682274.1:ENST00000682827.1:ENST00000682075.1:ENST00000683104.1:ENST00000684012.1:ENST00000581041.5:ENST00000684553.1:ENST00000683737.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	24	2	3.97626	4.1576249999999995	4.33899	0.0300538	0.0206616	0.142135	0.110999
chr18	26302384	26302483	6885257	0	+	0.454545	(0.44,0.476]	chr18	682484	67	INTRON	INTRON	TAF4B	ENSG00000141384.13	ENST00000269142.10:ENST00000578121.5:ENST00000418698.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	24	2	3.97626	4.1576249999999995	4.33899	0.0300538	0.0206616	0.142135	0.110999
chr2	152734606	152734703	894413	0	+	0.443299	(0.44,0.476]	chr2	99120	22	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	ARL6IP6	ENSG00000177917.12	ENST00000690727.1:ENST00000685752.1:ENST00000688293.1:ENST00000686839.1:ENST00000689155.1:ENST00000691702.1:ENST00000691523.1:ENST00000688012.1:ENST00000687504.1:ENST00000455875.6:ENST00000692124.1:ENST00000693573.1:ENST00000692399.1:ENST00000425034.6:ENST00000686080.1:ENST00000326446.10:ENST00000463690.2:ENST00000688130.1:ENST00000495469.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	24	2	3.97626	4.1576249999999995	4.33899	0.0300538	0.0206616	0.142135	0.110999
chr3	10256164	10256263	1364124	0	+	0.474747	(0.44,0.476]	chr3	143770	62	INTRON	INTRON	TATDN2	ENSG00000157014.11	ENST00000287652.8:ENST00000448281.7	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	3.97626	4.1576249999999995	4.33899	0.0300538	0.0206616	0.142135	0.110999
chr5	69363868	69363965	2637056	0	-	0.474227	(0.44,0.476]	chr5	250480	20	EXON_MRNA	EXON_MRNA:INTRON	AK6:TAF9	ENSG00000085231.14:ENSG00000273841.6	ENST00000380822.9:ENST00000502819.5:ENST00000380818.7:ENST00000512561.5:ENST00000618980.1:ENST00000685776.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	24	2	3.97626	4.1576249999999995	4.33899	0.0300538	0.0206616	0.142135	0.110999
chr9	92383058	92383158	4155017	0	+	0.45	(0.44,0.476]	chr9	379002	28	INTRON	INTRON	CENPP	ENSG00000188312.14	ENST00000375587.8	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	3.97626	4.1576249999999995	4.33899	0.0300538	0.0206616	0.142135	0.110999
chr9	127564429	127564529	4356005	0	-	0.45	(0.44,0.476]	chr9	399853	28	INTRON	INTRON	NIBAN2	ENSG00000136830.12	ENST00000373314.7:ENST00000373312.4:ENST00000478917.1:ENST00000468379.1:ENST00000484348.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	24	2	3.97626	4.1576249999999995	4.33899	0.0300538	0.0206616	0.142135	0.110999
chr9	130071142	130071242	4211125	0	+	0.45	(0.44,0.476]	chr9	385992	167	INTRON	INTRON	GPR107	ENSG00000148358.20	ENST00000372406.5:ENST00000372410.7:ENST00000347136.11:ENST00000493417.5:ENST00000610997.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	24	2	3.97626	4.1576249999999995	4.33899	0.0300538	0.0206616	0.142135	0.110999
chr6	106276467	106276567	3177667	0	-	0.35	(0.32,0.35]	chr6	296175	279	INTRON	INTRON	ATG5	ENSG00000057663.16	ENST00000636437.1:ENST00000636335.1:ENST00000369070.5:ENST00000369076.8:ENST00000635758.2:ENST00000360666.6:ENST00000343245.7:ENST00000646025.1:ENST00000613993.1:ENST00000476518.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	54	2	3.18392	4.1575750000000005	5.13123	0.00394704	0.00379806	0.0562562	0.0548259
chr10	92452964	92453063	4664153	0	-	0.333333	(0.32,0.35]	chr10	429726	14	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	IDE	ENSG00000119912.18	ENST00000265986.11:ENST00000679312.1:ENST00000650060.1:ENST00000371581.9:ENST00000679089.1:ENST00000677569.1:ENST00000677096.1:ENST00000679222.1:ENST00000678097.1:ENST00000676540.1:ENST00000678026.1:ENST00000676626.1:ENST00000678082.1:ENST00000679069.1:ENST00000678977.1:ENST00000679232.1:ENST00000678844.1:ENST00000679174.1:ENST00000678673.1:ENST00000676816.1:ENST00000678715.1:ENST00000678458.1:ENST00000677193.1:ENST00000679304.1:ENST00000676987.1:ENST00000677079.1:ENST00000677434.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	54	2	3.07975	4.157475	5.2352	0.00554235	0.0028268	0.0674105	0.0472361
chr18	2770608	2770692	6866066	0	+	0.428571	(0.408,0.44]	chr18	680165	1	INTRON	INTRON	SMCHD1	ENSG00000101596.17	ENST00000320876.11:ENST00000688342.1:ENST00000693213.1:ENST00000577880.5:ENST00000584897.5:ENST00000686763.1:ENST00000686864.1:ENST00000688708.1:ENST00000645355.1:ENST00000688964.1:ENST00000685656.1:ENST00000689034.1:ENST00000693522.1:ENST00000583344.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	52	2	2.74518	4.157455	5.56973	0.0152229	3.81714e-4	0.108535	0.0181283
chr1	45676393	45676493	440486	0	-	0.47	(0.44,0.476]	chr1	53361	148	INTRON	INTRON	GPBP1L1	ENSG00000159592.11	ENST00000290795.7:ENST00000355105.8:ENST00000488278.5:ENST00000480941.1:ENST00000480083.5:ENST00000493083.5:ENST00000460859.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	66	2	2.82351	4.15724	5.49097	0.00191049	4.8612e-4	0.0403772	0.0203841
chr1	246075055	246075155	676382	0	-	0.32	(0.28,0.32]	chr1	79717	216	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000391836.3:ENST00000464398.1:ENST00000453676.5:ENST00000462422.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	62	2	2.78004	4.15703	5.53402	0.0193244	4.0843e-4	0.108861	0.0181306
chr21	15048167	15048267	7432094	0	-	0.26	[0,0.28]	chr21	757990	42	INTRON	INTRON	NRIP1	ENSG00000180530.11	ENST00000400202.5:ENST00000318948.7:ENST00000400199.5:ENST00000638122.1:ENST00000637963.1:ENST00000637630.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	68	2	3.01287	4.156985	5.3011	0.0115634	0.00185843	0.0889104	0.039946
chr1	16999910	17000010	384140	0	-	0.54	(0.515,0.57]	chr1	45329	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ATP13A2	ENSG00000159363.19	ENST00000326735.13:ENST00000452699.5:ENST00000341676.9:ENST00000463860.5:ENST00000502860.1:ENST00000506174.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	23	2	3.89856	4.15677	4.41498	0.0280943	0.0106866	0.137011	0.0861859
chr10	5439616	5439716	4384131	0	+	0.53	(0.515,0.57]	chr10	404406	100	INTRON	INTRON	NET1	ENSG00000173848.19	ENST00000355029.9	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	3.89856	4.15677	4.41498	0.0280943	0.0106866	0.137011	0.0861859
chr10	133290646	133290743	4717483	0	-	0.546392	(0.515,0.57]	chr10	435460	8	EXON_MRNA	EXON_MRNA:INTRON	TUBGCP2	ENSG00000130640.15	ENST00000252936.8:ENST00000682123.1:ENST00000683612.1:ENST00000683786.1:ENST00000682515.1:ENST00000682905.1:ENST00000682256.1:ENST00000684478.1:ENST00000682161.1:ENST00000682332.1:ENST00000684487.1:ENST00000683673.1:ENST00000682093.1:ENST00000683014.1:ENST00000682631.1:ENST00000683829.1:ENST00000683308.1:ENST00000683060.1:ENST00000683383.1:ENST00000682990.1:ENST00000417178.7:ENST00000368562.5:ENST00000482278.5:ENST00000543663.6:ENST00000682712.1:ENST00000683704.1:ENST00000683552.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	23	2	3.89856	4.15677	4.41498	0.0280943	0.0106866	0.137011	0.0861859
chr15	79912709	79912808	6241068	0	-	0.545455	(0.515,0.57]	chr15	595783	47	INTRON	INTRON	ST20-MTHFS:ST20	ENSG00000259332.3:ENSG00000180953.11	ENST00000615374.5:ENST00000479961.1:ENST00000494999.1:ENST00000478497.5:ENST00000485386.1	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	3.89856	4.15677	4.41498	0.0280943	0.0106866	0.137011	0.0861859
chr19	5931871	5931951	7125129	0	-	0.55	(0.515,0.57]	chr19	717329	4	SS3_PROX	SS3_PROX:INTRON	RANBP3	ENSG00000031823.14	ENST00000340578.10:ENST00000439268.6:ENST00000592771.5:ENST00000586344.5:ENST00000591092.5:ENST00000034275.12:ENST00000587479.2:ENST00000587411.5:ENST00000592621.5:ENST00000590623.5:ENST00000591736.5:ENST00000590953.5:ENST00000588879.5:ENST00000587159.5:ENST00000586117.5:ENST00000589353.5:ENST00000587463.5:ENST00000588010.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	23	2	3.89856	4.15677	4.41498	0.0280943	0.0106866	0.137011	0.0861859
chr19	38975185	38975285	7181767	0	-	0.57	(0.515,0.57]	chr19	726151	2	SS5_PROX	SS5_PROX:INTRON	FBXO17	ENSG00000269190.6	ENST00000292852.9:ENST00000596025.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	23	2	3.89856	4.15677	4.41498	0.0280943	0.0106866	0.137011	0.0861859
chr19	45997392	45997491	7080853	0	+	0.525253	(0.515,0.57]	chr19	708417	6	INTRON	INTRON	CCDC61	ENSG00000104983.8	ENST00000536603.5:ENST00000595358.5:ENST00000596161.5:ENST00000594672.5:ENST00000596687.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	23	2	3.89856	4.15677	4.41498	0.0280943	0.0106866	0.137011	0.0861859
chr5	181318394	181318494	2563788	0	+	0.53	(0.515,0.57]	chr5	245374	6	INTRON	INTRON	ENSG00000238035	ENSG00000238035.8	ENST00000499986.8:ENST00000604669.5:ENST00000604354.1	lncRNA	lncRNA	lncRNA	lncRNA	0	23	2	3.89856	4.15677	4.41498	0.0280943	0.0106866	0.137011	0.0861859
chr8	144784078	144784178	4087077	0	-	0.52	(0.515,0.57]	chr8	372242	34	INTRON	INTRON	ZNF34	ENSG00000196378.13	ENST00000429371.7:ENST00000343459.8:ENST00000527740.1:ENST00000534445.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	23	2	3.89856	4.15677	4.41498	0.0280943	0.0106866	0.137011	0.0861859
chrX	48464836	48464932	7815406	0	-	0.552083	(0.515,0.57]	chrX	796682	15	INTRON	INTRON	SLC38A5	ENSG00000017483.16	ENST00000595796.5:ENST00000619100.4:ENST00000620913.5:ENST00000497336.1:ENST00000494034.5:ENST00000440085.5:ENST00000441948.5:ENST00000413668.5:ENST00000416711.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	23	2	3.89856	4.15677	4.41498	0.0280943	0.0106866	0.137011	0.0861859
chr2	208246603	208246701	1318587	0	-	0.387755	(0.378,0.408]	chr2	138294	8	INTRON	INTRON	IDH1	ENSG00000138413.14	ENST00000345146.7:ENST00000446179.5:ENST00000415913.5:ENST00000415282.5	protein_coding	protein_coding	protein_coding	protein_coding	2	119	2	3.50907	4.1566849999999995	4.8043	0.00127828	5.39334e-7	0.0326395	3.95293e-4
chr1	45913667	45913748	94915	0	+	0.320988	(0.32,0.35]	chr1	12703	2	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	MAST2	ENSG00000086015.23	ENST00000470809.1:ENST00000361297.7:ENST00000372008.6:ENST00000674079.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	26	2	3.77344	4.1566600000000005	4.53988	0.0596635	0.0202178	0.189982	0.109913
chr11	87277448	87277547	4845212	0	+	0.343434	(0.32,0.35]	chr11	451872	1	INTRON	INTRON	TMEM135	ENSG00000166575.17	ENST00000340353.11:ENST00000305494.6:ENST00000532959.5	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	3.77344	4.1566600000000005	4.53988	0.0596635	0.0202178	0.189982	0.109913
chr2	32372311	32372411	730931	0	+	0.35	(0.32,0.35]	chr2	84274	145	INTRON	INTRON	BIRC6	ENSG00000115760.15	ENST00000421745.7:ENST00000648282.1	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	3.77344	4.1566600000000005	4.53988	0.0596635	0.0202178	0.189982	0.109913
chr3	138167994	138168089	1828539	0	-	0.336842	(0.32,0.35]	chr3	183771	3	INTRON	INTRON	DBR1	ENSG00000138231.13	ENST00000260803.9:ENST00000477557.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	26	2	3.77344	4.1566600000000005	4.53988	0.0596635	0.0202178	0.189982	0.109913
chr9	33974532	33974631	4245094	0	-	0.323232	(0.32,0.35]	chr9	390451	9	INTRON	INTRON	UBAP2	ENSG00000137073.24	ENST00000379238.7:ENST00000683659.1:ENST00000682239.1:ENST00000683140.1:ENST00000682209.1:ENST00000681980.1:ENST00000360802.6:ENST00000683252.1:ENST00000684158.1:ENST00000682914.1:ENST00000683717.1:ENST00000379239.9:ENST00000683084.1:ENST00000684754.1:ENST00000629575.2:ENST00000684298.1:ENST00000412543.6:ENST00000421278.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	26	2	3.77344	4.1566600000000005	4.53988	0.0596635	0.0202178	0.189982	0.109913
chr9	37186888	37186971	4118325	0	+	0.349398	(0.32,0.35]	chr9	375388	3	UTR3	UTR3:EXON_MRNA:INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000322831.6:ENST00000461038.5:ENST00000488607.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	26	2	3.77344	4.1566600000000005	4.53988	0.0596635	0.0202178	0.189982	0.109913
chr18	26085922	26085974	6959694	0	-	0.442308	(0.44,0.476]	chr18	688507	1	EXON_LNCRNA	EXON_LNCRNA:INTRON	SS18	ENSG00000141380.14	ENST00000415083.7:ENST00000542420.6:ENST00000579640.5:ENST00000269138.9:ENST00000269137.11:ENST00000585121.5:ENST00000539244.6:ENST00000585241.5:ENST00000578954.5:ENST00000579061.5:ENST00000577636.5:ENST00000584083.5:ENST00000578700.5:ENST00000582792.5:ENST00000581021.5:ENST00000577572.5:ENST00000582448.5:ENST00000581570.5:ENST00000577751.5:ENST00000580751.5:ENST00000580642.2:ENST00000578595.1:ENST00000583595.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	53	2	2.86231	4.1566399999999994	5.45097	0.012214	1.90652e-4	0.0910127	0.0120089
chr6	17696000	17696100	3066105	0	-	0.33	(0.32,0.35]	chr6	284872	70	INTRON	INTRON	NUP153	ENSG00000124789.12	ENST00000613258.4:ENST00000537253.5:ENST00000262077.3	protein_coding	protein_coding	protein_coding	protein_coding	1	59	2	3.07935	4.1563099999999995	5.23327	0.00724137	9.33826e-4	0.0729826	0.0278746
chr19	15389249	15389349	7147815	0	-	0.36	(0.35,0.378]	chr19	722074	68	INTRON	INTRON	AKAP8L	ENSG00000011243.19	ENST00000594594.6:ENST00000679638.1:ENST00000595465.6:ENST00000599137.6:ENST00000397410.10:ENST00000609519.5:ENST00000593845.5:ENST00000680649.1:ENST00000596213.6:ENST00000681170.1:ENST00000680703.1:ENST00000680017.1:ENST00000595879.6:ENST00000680303.1:ENST00000679634.1:ENST00000681744.1:ENST00000680803.1:ENST00000681459.1:ENST00000680323.1:ENST00000680774.1:ENST00000680302.1:ENST00000680103.1:ENST00000680642.1:ENST00000681405.1:ENST00000680957.1:ENST00000680865.1:ENST00000680363.1:ENST00000595087.6:ENST00000600065.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	52	2	3.05136	4.156305	5.26125	0.00578894	0.00191117	0.0684334	0.03947
chr16	89801108	89801205	6544662	0	-	0.505155	(0.476,0.515]	chr16	634579	11	INTRON	INTRON	FANCA	ENSG00000187741.16	ENST00000561667.2:ENST00000389301.8:ENST00000568369.6:ENST00000564475.6:ENST00000696275.1:ENST00000696287.1:ENST00000696286.1:ENST00000696274.1:ENST00000696291.1:ENST00000696276.1:ENST00000567205.2:ENST00000567284.7:ENST00000696277.1:ENST00000696292.1:ENST00000563767.2:ENST00000567621.6:ENST00000696288.1:ENST00000696293.1:ENST00000566889.5:ENST00000389302.7:ENST00000696294.1:ENST00000696295.1:ENST00000563673.5:ENST00000543736.5:ENST00000534992.5:ENST00000565582.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	71	2	2.41121	4.15628	5.90135	0.0110342	2.02515e-5	0.0873897	0.00348937
chr4	88780864	88780964	2200189	0	-	0.28	[0,0.28]	chr4	215931	3	SS5_PROX	SS5_PROX:INTRON	FAM13A	ENSG00000138640.15	ENST00000395002.6:ENST00000264344.10:ENST00000503556.5:ENST00000511976.5:ENST00000508369.5:ENST00000513837.5:ENST00000504836.5:ENST00000507352.1:ENST00000502459.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	83	2	2.75887	4.1562149999999995	5.55356	0.00360252	0.00278704	0.0552588	0.0469265
chr18	73240112	73240211	6988374	0	-	0.363636	(0.35,0.378]	chr18	691704	390	INTRON	INTRON	LINC02864	ENSG00000263711.6	ENST00000584544.5:ENST00000581011.5:ENST00000581862.6:ENST00000669547.1:ENST00000661525.1:ENST00000583405.5	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	4	99	2	2.696	4.1557200000000005	5.61544	5.06729e-4	4.12892e-4	0.020816	0.0181365
chr19	10663316	10663415	7013302	0	+	0.545455	(0.515,0.57]	chr19	696757	74	INTRON	INTRON	ILF3	ENSG00000129351.17	ENST00000449870.5:ENST00000587928.5:ENST00000407004.7:ENST00000589998.5:ENST00000589600.5:ENST00000589283.5:ENST00000590009.5:ENST00000593199.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	47	2	3.62821	4.155654999999999	4.6831	0.00471288	4.12866e-4	0.0600108	0.0181365
chr8	38243964	38244063	3735653	0	+	0.535354	(0.515,0.57]	chr8	347117	12	INTRON	INTRON	DDHD2	ENSG00000085788.14	ENST00000397166.7:ENST00000520272.6:ENST00000527415.5:ENST00000532106.1:ENST00000528888.5:ENST00000531344.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	47	2	3.62821	4.155654999999999	4.6831	0.00471288	4.12866e-4	0.0600108	0.0181365
chr7	75453613	75453713	3558603	0	-	0.29	(0.28,0.32]	chr7	331545	110	INTRON	INTRON	POM121C	ENSG00000272391.6	ENST00000615331.5:ENST00000398379.2	protein_coding	protein_coding	protein_coding	protein_coding	1	57	2	3.26551	4.15565	5.04579	0.00714672	0.0030714	0.0723634	0.0509893
chr5	138353686	138353786	2494861	0	+	0.47	(0.44,0.476]	chr5	238471	3	INTRON	INTRON	KDM3B	ENSG00000120733.14	ENST00000314358.10	protein_coding	protein_coding	protein_coding	protein_coding	3	86	2	2.47804	4.1555599999999995	5.83308	0.00325838	2.77366e-5	0.0508595	0.00415129
chr15	28814253	28814351	5989395	0	+	0.316327	(0.28,0.32]	chr15	569501	55	INTRON	INTRON	PDCD6IPP2	ENSG00000261377.6	ENST00000566321.5	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	1	59	2	3.50836	4.155455	4.80255	0.0137406	0.00117393	0.0949306	0.0316446
chr19	8475238	8475337	7011080	0	+	0.474747	(0.44,0.476]	chr19	696197	6	INTRON	INTRON	HNRNPM	ENSG00000099783.12	ENST00000348943.7:ENST00000600092.5:ENST00000325495.9:ENST00000600806.5:ENST00000620401.4:ENST00000594907.5:ENST00000597270.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	50	2	2.9586	4.155435	5.35227	0.00758318	8.47974e-4	0.0773151	0.0267232
chr2	32498050	32498149	732244	0	+	0.444444	(0.44,0.476]	chr2	84523	40	INTRON	INTRON	BIRC6	ENSG00000115760.15	ENST00000421745.7:ENST00000648282.1	protein_coding	protein_coding	protein_coding	protein_coding	1	50	2	2.9586	4.155435	5.35227	0.00758318	8.47974e-4	0.0773151	0.0267232
chr21	45426351	45426451	7419719	0	+	0.63	(0.57,1]	chr21	756409	205	INTRON	INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	3.34751	4.155435	4.96336	0.00122677	2.05554e-4	0.0320791	0.0124557
chr12	123307712	123307811	5444607	0	-	0.454545	(0.44,0.476]	chr12	520975	26	INTRON	INTRON	SBNO1	ENSG00000139697.14	ENST00000602398.3:ENST00000267176.8:ENST00000420886.6	protein_coding	protein_coding	protein_coding	protein_coding	2	71	2	2.63508	4.155335	5.67559	0.00501007	6.34721e-5	0.0618077	0.00658818
chr19	11106064	11106100	7016984	0	+	0.5	(0.476,0.515]	chr19	697439	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	LDLR	ENSG00000130164.14	ENST00000557933.5:ENST00000558518.6:ENST00000545707.5:ENST00000535915.5:ENST00000455727.6:ENST00000558013.5:ENST00000252444.9:ENST00000560467.1	protein_coding	protein_coding	protein_coding	protein_coding	2	66	2	2.76855	4.1553249999999995	5.5421	0.00244302	3.56777e-4	0.0456956	0.0175154
chr3	197831796	197831896	1598131	0	+	0.46	(0.44,0.476]	chr3	165602	2	SS3_PROX	SS3_PROX:INTRON	LRCH3	ENSG00000186001.14	ENST00000438796.6:ENST00000428136.2:ENST00000425562.7:ENST00000441090.6:ENST00000414675.6:ENST00000334859.8	protein_coding	protein_coding	protein_coding	protein_coding	2	66	2	2.69297	4.155234999999999	5.6175	0.00333494	2.84938e-4	0.0528877	0.015495
chr1	91512423	91512490	161227	0	+	0.38806	(0.378,0.408]	chr1	17398	1	INTRON	INTRON	CDC7	ENSG00000097046.13	ENST00000234626.11:ENST00000428239.5	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	3.98867	4.1552050000000005	4.32174	0.0507	0.0132362	0.156383	0.0999551
chr1	223989748	223989848	643778	0	-	0.38	(0.378,0.408]	chr1	76031	12	INTRON	INTRON	GTF2IP20	ENSG00000272645.4	ENST00000634905.2:ENST00000685304.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	24	2	3.98867	4.1552050000000005	4.32174	0.0507	0.0132362	0.156383	0.0999551
chr10	63419541	63419641	4634927	0	-	0.4	(0.378,0.408]	chr10	426236	387	INTRON	INTRON	JMJD1C	ENSG00000171988.20	ENST00000399262.7:ENST00000633035.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	24	2	3.98867	4.1552050000000005	4.32174	0.0507	0.0132362	0.156383	0.0999551
chr10	86513685	86513785	4659284	0	-	0.4	(0.378,0.408]	chr10	429294	126	INTRON	INTRON	WAPL	ENSG00000062650.20	ENST00000298767.10	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	3.98867	4.1552050000000005	4.32174	0.0507	0.0132362	0.156383	0.0999551
chr13	99271892	99271992	5525151	0	+	0.38	(0.378,0.408]	chr13	528241	269	INTRON	INTRON	UBAC2	ENSG00000134882.16	ENST00000355700.9:ENST00000403766.8:ENST00000468067.5:ENST00000473091.5:ENST00000376440.6:ENST00000494576.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	24	2	3.98867	4.1552050000000005	4.32174	0.0507	0.0132362	0.156383	0.0999551
chr14	50229441	50229540	5888555	0	-	0.40404	(0.378,0.408]	chr14	559002	137	INTRON	INTRON	SOS2	ENSG00000100485.12	ENST00000216373.10:ENST00000543680.5:ENST00000556469.5:ENST00000555666.1:ENST00000556452.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	24	2	3.98867	4.1552050000000005	4.32174	0.0507	0.0132362	0.156383	0.0999551
chr16	70121911	70122010	6383509	0	+	0.40404	(0.378,0.408]	chr16	613459	8	INTRON	INTRON	PDPR	ENSG00000090857.14	ENST00000288050.9:ENST00000561920.5:ENST00000568530.5:ENST00000398122.7:ENST00000565186.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	24	2	3.98867	4.1552050000000005	4.32174	0.0507	0.0132362	0.156383	0.0999551
chr17	30163362	30163462	6587861	0	+	0.39	(0.378,0.408]	chr17	640586	2	SS5_PROX	SS5_PROX:INTRON	NSRP1	ENSG00000126653.18	ENST00000540900.7:ENST00000612959.4:ENST00000247026.10:ENST00000577289.6:ENST00000584154.5:ENST00000394826.8:ENST00000475652.5:ENST00000584317.5:ENST00000585881.5:ENST00000467446.6:ENST00000580103.6:ENST00000581048.5:ENST00000588614.1:ENST00000589608.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	24	2	3.98867	4.1552050000000005	4.32174	0.0507	0.0132362	0.156383	0.0999551
chr18	63354312	63354410	6984436	0	-	0.397959	(0.378,0.408]	chr18	691112	29	INTRON	INTRON	KDSR	ENSG00000119537.18	ENST00000645214.2:ENST00000646205.1:ENST00000644624.1:ENST00000591902.6:ENST00000326575.9:ENST00000585750.1:ENST00000592327.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	24	2	3.98867	4.1552050000000005	4.32174	0.0507	0.0132362	0.156383	0.0999551
chr19	43663725	43663824	7187837	0	-	0.40404	(0.378,0.408]	chr19	727503	19	INTRON	INTRON	PLAUR	ENSG00000011422.12	ENST00000339082.7:ENST00000340093.8:ENST00000601723.5:ENST00000221264.8:ENST00000593714.5:ENST00000599892.5:ENST00000597107.1:ENST00000602141.5:ENST00000593939.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	24	2	3.98867	4.1552050000000005	4.32174	0.0507	0.0132362	0.156383	0.0999551
chr2	158539404	158539503	897969	0	+	0.393939	(0.378,0.408]	chr2	99354	55	INTRON	INTRON	PKP4	ENSG00000144283.23	ENST00000389759.8:ENST00000426248.7:ENST00000389757.7:ENST00000457109.5:ENST00000452162.5:ENST00000411900.5:ENST00000421462.5:ENST00000462335.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	24	2	3.98867	4.1552050000000005	4.32174	0.0507	0.0132362	0.156383	0.0999551
chr3	14976786	14976886	1372073	0	+	0.39	(0.378,0.408]	chr3	144608	139	INTRON	INTRON	NR2C2	ENSG00000177463.16	ENST00000425241.6:ENST00000413118.5:ENST00000435454.5:ENST00000323373.10:ENST00000475707.5:ENST00000393102.7:ENST00000437120.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	24	2	3.98867	4.1552050000000005	4.32174	0.0507	0.0132362	0.156383	0.0999551
chr5	136516106	136516205	2493905	0	+	0.383838	(0.378,0.408]	chr5	238214	58	INTRON	INTRON	ENSG00000249803	ENSG00000249803.6	ENST00000653158.1:ENST00000446720.3:ENST00000665110.1:ENST00000657590.1:ENST00000658501.1:ENST00000660537.1	lncRNA	lncRNA	lncRNA	lncRNA	0	24	2	3.98867	4.1552050000000005	4.32174	0.0507	0.0132362	0.156383	0.0999551
chr6	111014759	111014858	2939633	0	+	0.383838	(0.378,0.408]	chr6	276877	63	INTRON	INTRON	RPF2	ENSG00000197498.13	ENST00000368864.8:ENST00000441448.7:ENST00000607388.1:ENST00000425871.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	24	2	3.98867	4.1552050000000005	4.32174	0.0507	0.0132362	0.156383	0.0999551
chrX	53592197	53592297	7820919	0	-	0.38	(0.378,0.408]	chrX	798065	4	SS5_PROX	SS5_PROX:INTRON	HUWE1	ENSG00000086758.16	ENST00000262854.11:ENST00000342160.7:ENST00000612484.4:ENST00000218328.12	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	24	2	3.98867	4.1552050000000005	4.32174	0.0507	0.0132362	0.156383	0.0999551
chr2	230732249	230732349	1030353	0	+	0.49	(0.476,0.515]	chr2	110002	178	INTRON	INTRON	CAB39	ENSG00000135932.12	ENST00000258418.10:ENST00000409788.7:ENST00000410084.7	protein_coding	protein_coding	protein_coding	protein_coding	2	66	2	2.81076	4.1547149999999995	5.49867	0.00203568	4.28561e-4	0.0417667	0.0189958
chr1	174221863	174221963	257730	0	+	0.39	(0.378,0.408]	chr1	30734	3	INTRON	INTRON	RABGAP1L	ENSG00000152061.24	ENST00000357444.10:ENST00000251507.8:ENST00000681986.1:ENST00000635248.1:ENST00000457696.1:ENST00000487987.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	24	2	4.09379	4.15471	4.21563	0.0315429	0.023912	0.13151	0.129075
chr10	68395804	68395899	4639045	0	-	0.4	(0.378,0.408]	chr10	426598	10	INTRON	INTRON	RUFY2	ENSG00000204130.14	ENST00000466493.5:ENST00000602465.6:ENST00000388768.6:ENST00000399200.7:ENST00000454950.6:ENST00000472394.2:ENST00000342616.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	24	2	4.09379	4.15471	4.21563	0.0315429	0.023912	0.13151	0.129075
chr12	98646532	98646631	5199134	0	+	0.393939	(0.378,0.408]	chr12	491887	3	INTRON	INTRON	APAF1	ENSG00000120868.14	ENST00000551964.6:ENST00000359972.6:ENST00000333991.5:ENST00000357310.5:ENST00000547743.1	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	4.09379	4.15471	4.21563	0.0315429	0.023912	0.13151	0.129075
chr13	95238218	95238317	5639241	0	-	0.40404	(0.378,0.408]	chr13	537157	30	INTRON	INTRON	ABCC4	ENSG00000125257.16	ENST00000645237.2:ENST00000643051.1:ENST00000643842.1:ENST00000646439.1:ENST00000643816.1:ENST00000536256.3:ENST00000643556.1:ENST00000629385.1:ENST00000642524.1:ENST00000645532.1:ENST00000644471.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	24	2	4.09379	4.15471	4.21563	0.0315429	0.023912	0.13151	0.129075
chr14	58445408	58445505	5732176	0	+	0.381443	(0.378,0.408]	chr14	544338	4	INTRON	INTRON	KIAA0586	ENSG00000100578.18	ENST00000354386.10:ENST00000619416.4:ENST00000619722.5:ENST00000423743.7:ENST00000652732.1:ENST00000650904.1:ENST00000652326.2:ENST00000650845.1:ENST00000555833.5:ENST00000651937.1:ENST00000261244.9:ENST00000555203.6:ENST00000652120.1:ENST00000538571.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	24	2	4.09379	4.15471	4.21563	0.0315429	0.023912	0.13151	0.129075
chr15	43862476	43862575	6013001	0	+	0.383838	(0.378,0.408]	chr15	572813	7	INTRON	INTRON	WDR76	ENSG00000092470.12	ENST00000381246.6:ENST00000263795.11:ENST00000478130.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	24	2	4.09379	4.15471	4.21563	0.0315429	0.023912	0.13151	0.129075
chr17	63779860	63779960	6661015	0	+	0.38	(0.378,0.408]	chr17	649943	43	INTRON	INTRON	DDX42	ENSG00000198231.14	ENST00000581135.5:ENST00000578681.5:ENST00000583590.5:ENST00000389924.7:ENST00000359353.9	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	4.09379	4.15471	4.21563	0.0315429	0.023912	0.13151	0.129075
chr2	3439893	3439993	686349	0	+	0.39	(0.378,0.408]	chr2	80494	149	INTRON	INTRON	TRAPPC12	ENSG00000171853.16	ENST00000382110.6:ENST00000324266.10:ENST00000457845.4:ENST00000441983.5:ENST00000417243.5:ENST00000469147.5:ENST00000441099.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	24	2	4.09379	4.15471	4.21563	0.0315429	0.023912	0.13151	0.129075
chr2	235578825	235578925	1042185	0	+	0.39	(0.378,0.408]	chr2	111222	539	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1:ENST00000402604.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	24	2	4.09379	4.15471	4.21563	0.0315429	0.023912	0.13151	0.129075
chr3	101401049	101401149	1757450	0	-	0.38	(0.378,0.408]	chr3	178317	16	INTRON	INTRON	SENP7	ENSG00000138468.16	ENST00000394095.7:ENST00000314261.11:ENST00000394094.6:ENST00000394091.5:ENST00000348610.3	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	4.09379	4.15471	4.21563	0.0315429	0.023912	0.13151	0.129075
chr6	79011603	79011702	3141400	0	-	0.40404	(0.378,0.408]	chr6	292832	74	INTRON	INTRON	PHIP	ENSG00000146247.14	ENST00000275034.5	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	4.09379	4.15471	4.21563	0.0315429	0.023912	0.13151	0.129075
chr7	76064092	76064165	3339822	0	+	0.39726	(0.378,0.408]	chr7	311023	1	SS3_PROX	SS3_PROX:INTRON	MDH2	ENSG00000146701.12	ENST00000443006.5:ENST00000315758.10:ENST00000432020.2:ENST00000424167.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	24	2	4.09379	4.15471	4.21563	0.0315429	0.023912	0.13151	0.129075
chr8	125230474	125230574	3854878	0	+	0.4	(0.378,0.408]	chr8	355249	478	INTRON	INTRON	NSMCE2	ENSG00000156831.8	ENST00000517532.5:ENST00000287437.8:ENST00000522563.5:ENST00000517315.1	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	4.09379	4.15471	4.21563	0.0315429	0.023912	0.13151	0.129075
chr8	127956827	127956927	3861687	0	+	0.38	(0.378,0.408]	chr8	355467	135	INTRON	INTRON	PVT1	ENSG00000249859.13	ENST00000667305.1:ENST00000690350.1:ENST00000653522.1:ENST00000661830.1:ENST00000657289.1:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000656880.1:ENST00000660200.1:ENST00000657211.1:ENST00000653845.1:ENST00000517525.2:ENST00000651587.1:ENST00000692980.1:ENST00000666353.1:ENST00000654324.1:ENST00000657693.1:ENST00000666080.1:ENST00000667539.1:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000664293.1:ENST00000662410.1:ENST00000670795.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000654091.1:ENST00000657356.1:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000662061.1:ENST00000656491.1:ENST00000667714.1:ENST00000654105.1:ENST00000665721.1:ENST00000660438.1:ENST00000659326.1:ENST00000666842.1:ENST00000517790.2:ENST00000654369.1:ENST00000664995.1:ENST00000656532.1:ENST00000661988.1:ENST00000670714.1:ENST00000669951.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000656693.1:ENST00000668123.1:ENST00000666776.1:ENST00000664299.1:ENST00000659912.1:ENST00000670532.1:ENST00000660896.1:ENST00000523068.2:ENST00000519481.6:ENST00000669082.1:ENST00000671088.1:ENST00000670204.1:ENST00000652695.1:ENST00000517838.6:ENST00000663461.1:ENST00000513868.6:ENST00000670626.1	lncRNA	lncRNA	lncRNA	lncRNA	0	24	2	4.09379	4.15471	4.21563	0.0315429	0.023912	0.13151	0.129075
chr9	69055456	69055556	4137333	0	+	0.4	(0.378,0.408]	chr9	377034	18	INTRON	INTRON	FXN	ENSG00000165060.15	ENST00000644653.1:ENST00000484259.3:ENST00000396366.6:ENST00000377270.8:ENST00000498653.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	24	2	4.09379	4.15471	4.21563	0.0315429	0.023912	0.13151	0.129075
chr1	167980605	167980705	248932	0	+	0.25	[0,0.28]	chr1	29564	52	INTRON	INTRON	DCAF6	ENSG00000143164.16	ENST00000450548.5:ENST00000470919.5:ENST00000432587.6:ENST00000367843.7:ENST00000470721.5:ENST00000367840.4:ENST00000312263.10:ENST00000455334.5:ENST00000491067.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	61	2	3.00498	4.15461	5.30424	0.00876063	0.00584781	0.0846118	0.0667594
chr3	9452587	9452687	1359478	0	+	0.28	[0,0.28]	chr3	142788	3	SS3_PROX	SS3_PROX:INTRON	SETD5	ENSG00000168137.20	ENST00000402198.7:ENST00000682536.1:ENST00000663774.1:ENST00000665872.1:ENST00000666307.1:ENST00000693430.1:ENST00000691925.1:ENST00000684606.1:ENST00000691175.1:ENST00000688835.1:ENST00000443339.5:ENST00000406341.5:ENST00000670063.1:ENST00000684055.1:ENST00000407969.5:ENST00000493918.5:ENST00000399686.6:ENST00000413704.5:ENST00000691988.1:ENST00000466242.5:ENST00000682236.1:ENST00000488236.5:ENST00000421188.1:ENST00000478961.6:ENST00000476740.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	61	2	3.00498	4.15461	5.30424	0.00876063	0.00584781	0.0846118	0.0667594
chr6	160992782	160992882	3024500	0	+	0.28	[0,0.28]	chr6	282304	3	INTRON	INTRON	MAP3K4	ENSG00000085511.20	ENST00000366919.6:ENST00000392142.9:ENST00000542952.5:ENST00000366920.6:ENST00000348824.11:ENST00000544041.5:ENST00000490904.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	61	2	3.00498	4.15461	5.30424	0.00876063	0.00584781	0.0846118	0.0667594
chr1	9555602	9555702	17294	0	+	0.44	(0.408,0.44]	chr1	1576	14	INTRON	INTRON	SLC25A33	ENSG00000171612.7	ENST00000302692.7	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	3.97679	4.154585	4.33238	0.0299485	0.0218901	0.142135	0.11491
chr12	122417225	122417325	5441628	0	-	0.41	(0.408,0.44]	chr12	520453	166	INTRON	INTRON	CLIP1	ENSG00000130779.22	ENST00000361654.8:ENST00000358808.6:ENST00000620786.5:ENST00000537178.5:ENST00000539080.1	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	3.97679	4.154585	4.33238	0.0299485	0.0218901	0.142135	0.11491
chr12	123579578	123579678	5445471	0	-	0.43	(0.408,0.44]	chr12	521145	38	EXON_LNCRNA	EXON_LNCRNA	TMED2-DT	ENSG00000247373.3	ENST00000498967.3	lncRNA	lncRNA	lncRNA	lncRNA	0	24	2	3.97679	4.154585	4.33238	0.0299485	0.0218901	0.142135	0.11491
chr14	73195149	73195248	5785365	0	+	0.414141	(0.408,0.44]	chr14	547993	19	INTRON	INTRON	PSEN1	ENSG00000080815.19	ENST00000357710.8:ENST00000324501.10:ENST00000394164.5:ENST00000555386.5:ENST00000557511.5:ENST00000553855.5:ENST00000406768.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	24	2	3.97679	4.154585	4.33238	0.0299485	0.0218901	0.142135	0.11491
chr14	102892015	102892113	5825086	0	+	0.428571	(0.408,0.44]	chr14	552616	2	INTRON	INTRON	TRAF3	ENSG00000131323.16	ENST00000392745.8:ENST00000560371.5:ENST00000347662.8:ENST00000539721.5:ENST00000351691.9:ENST00000558700.5:ENST00000559734.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	24	2	3.97679	4.154585	4.33238	0.0299485	0.0218901	0.142135	0.11491
chr16	16520011	16520111	6311062	0	+	0.43	(0.408,0.44]	chr16	604098	200	INTRON	INTRON	ENSG00000260126	ENSG00000260126.2	ENST00000567465.2	lncRNA	lncRNA	lncRNA	lncRNA	0	24	2	3.97679	4.154585	4.33238	0.0299485	0.0218901	0.142135	0.11491
chr16	70300651	70300750	6384063	0	+	0.424242	(0.408,0.44]	chr16	613583	9	INTRON	INTRON	DDX19B:ENSG00000260537	ENSG00000157349.17:ENSG00000260537.2	ENST00000566216.5:ENST00000563392.5:ENST00000563206.5:ENST00000570055.5:ENST00000451014.7:ENST00000568625.5:ENST00000569099.6:ENST00000562519.5:ENST00000393657.6:ENST00000568008.5:ENST00000562912.5:ENST00000288071.11:ENST00000568460.5:ENST00000565116.1:ENST00000355992.7:ENST00000568408.5:ENST00000567706.1:ENST00000443119.7:ENST00000569224.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	24	2	3.97679	4.154585	4.33238	0.0299485	0.0218901	0.142135	0.11491
chr17	1558228	1558328	6701058	0	-	0.44	(0.408,0.44]	chr17	655886	3	SS5_PROX	SS5_PROX:INTRON	PITPNA	ENSG00000174238.16	ENST00000313486.12:ENST00000575288.5:ENST00000576722.5:ENST00000575895.5:ENST00000576761.5:ENST00000576010.6:ENST00000573231.1:ENST00000573056.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	24	2	3.97679	4.154585	4.33238	0.0299485	0.0218901	0.142135	0.11491
chr17	61769989	61770088	6807983	0	-	0.414141	(0.408,0.44]	chr17	672541	103	INTRON	INTRON	BRIP1	ENSG00000136492.10	ENST00000259008.7:ENST00000682755.1:ENST00000682453.1:ENST00000683039.1:ENST00000682989.1:ENST00000682589.1:ENST00000683235.1:ENST00000683535.1:ENST00000682477.1:ENST00000684584.1:ENST00000682073.1:ENST00000684769.1:ENST00000577598.5:ENST00000684471.1:ENST00000682433.1:ENST00000682066.1:ENST00000584322.2:ENST00000683381.1:ENST00000579028.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	24	2	3.97679	4.154585	4.33238	0.0299485	0.0218901	0.142135	0.11491
chr19	52212338	52212414	7094489	0	+	0.421053	(0.408,0.44]	chr19	711194	3	SS3_PROX	SS3_PROX:INTRON	PPP2R1A	ENSG00000105568.18	ENST00000454220.6:ENST00000322088.11:ENST00000462990.5:ENST00000473455.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	24	2	3.97679	4.154585	4.33238	0.0299485	0.0218901	0.142135	0.11491
chr20	32114234	32114334	7254353	0	+	0.44	(0.408,0.44]	chr20	736838	38	INTRON	INTRON	TM9SF4	ENSG00000101337.16	ENST00000398022.7:ENST00000442842.5:ENST00000450829.5:ENST00000217315.9:ENST00000417389.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	24	2	3.97679	4.154585	4.33238	0.0299485	0.0218901	0.142135	0.11491
chr20	50642981	50643081	7354957	0	-	0.44	(0.408,0.44]	chr20	750067	62	INTRON	INTRON	RIPOR3	ENSG00000042062.13	ENST00000327979.8	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	3.97679	4.154585	4.33238	0.0299485	0.0218901	0.142135	0.11491
chr21	29316720	29316820	7392530	0	+	0.41	(0.408,0.44]	chr21	753185	110	INTRON	INTRON	BACH1	ENSG00000156273.16	ENST00000548219.5:ENST00000550131.5:ENST00000547141.5:ENST00000546469.5:ENST00000286800.8:ENST00000399921.5:ENST00000548467.1:ENST00000451655.5:ENST00000447177.5:ENST00000435072.1	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	3.97679	4.154585	4.33238	0.0299485	0.0218901	0.142135	0.11491
chr3	14163814	14163913	1619018	0	-	0.424242	(0.408,0.44]	chr3	167323	36	INTRON	INTRON	XPC	ENSG00000154767.15	ENST00000285021.12:ENST00000476581.6:ENST00000477324.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	24	2	3.97679	4.154585	4.33238	0.0299485	0.0218901	0.142135	0.11491
chr3	49288619	49288719	1692973	0	-	0.41	(0.408,0.44]	chr3	173556	19	INTRON	INTRON	USP4	ENSG00000114316.13	ENST00000265560.9:ENST00000351842.8:ENST00000485450.5:ENST00000431357.1:ENST00000475873.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	24	2	3.97679	4.154585	4.33238	0.0299485	0.0218901	0.142135	0.11491
chr3	72792715	72792815	1746358	0	-	0.41	(0.408,0.44]	chr3	177378	4	SS5_PROX	SS5_PROX:INTRON	SHQ1	ENSG00000144736.14	ENST00000325599.13:ENST00000468371.5:ENST00000444040.6:ENST00000463369.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	24	2	3.97679	4.154585	4.33238	0.0299485	0.0218901	0.142135	0.11491
chr3	158130086	158130186	1538476	0	+	0.44	(0.408,0.44]	chr3	160262	57	INTRON	INTRON	RSRC1	ENSG00000174891.14	ENST00000480820.5:ENST00000494002.5:ENST00000295930.7:ENST00000471994.5:ENST00000683733.1:ENST00000682221.1:ENST00000683831.1:ENST00000683516.1:ENST00000482822.3:ENST00000476899.6:ENST00000464171.5:ENST00000611884.5:ENST00000682164.1:ENST00000684604.1:ENST00000683899.1:ENST00000682500.1:ENST00000684683.1:ENST00000684512.1:ENST00000683394.1:ENST00000684156.1:ENST00000312179.10:ENST00000475278.6:ENST00000480119.5:ENST00000468344.5:ENST00000471911.5:ENST00000683137.1:ENST00000477788.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	24	2	3.97679	4.154585	4.33238	0.0299485	0.0218901	0.142135	0.11491
chr5	122775862	122775962	2465985	0	+	0.43	(0.408,0.44]	chr5	236162	1	SS5_PROX	SS5_PROX:INTRON	SNX2	ENSG00000205302.7	ENST00000512394.5:ENST00000379516.7:ENST00000505934.5:ENST00000505854.5:ENST00000514949.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	24	2	3.97679	4.154585	4.33238	0.0299485	0.0218901	0.142135	0.11491
chr7	129339505	129339605	3410617	0	+	0.41	(0.408,0.44]	chr7	318776	1137	INTRON	INTRON	AHCYL2	ENSG00000158467.17	ENST00000325006.8:ENST00000446544.6	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	3.97679	4.154585	4.33238	0.0299485	0.0218901	0.142135	0.11491
chr8	73798085	73798185	3971448	0	-	0.43	(0.408,0.44]	chr8	364222	10	INTRON	INTRON	ENSG00000258677:UBE2W	ENSG00000258677.2:ENSG00000104343.21	ENST00000358757.5:ENST00000523278.5:ENST00000602593.6:ENST00000517608.5:ENST00000650817.1:ENST00000422906.6:ENST00000419880.7:ENST00000651945.1:ENST00000519277.5:ENST00000519255.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	24	2	3.97679	4.154585	4.33238	0.0299485	0.0218901	0.142135	0.11491
chr9	131459356	131459456	4217633	0	+	0.44	(0.408,0.44]	chr9	386776	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	PRRC2B	ENSG00000288701.1	ENST00000684596.1:ENST00000683519.1:ENST00000682501.1:ENST00000684736.1	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	3.97679	4.154585	4.33238	0.0299485	0.0218901	0.142135	0.11491
chr17	72914253	72914353	6833164	0	-	0.44	(0.408,0.44]	chr17	675178	641	INTRON	INTRON	SLC39A11	ENSG00000133195.12	ENST00000255559.8:ENST00000542342.6:ENST00000582769.5:ENST00000579491.1:ENST00000584129.1:ENST00000579732.5:ENST00000580557.5:ENST00000583146.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	54	2	3.2451	4.1542650000000005	5.06343	0.00337792	0.00101725	0.0516884	0.0293497
chr17	49015233	49015333	6624784	0	+	0.58	(0.57,1]	chr17	646601	8	INTRON	INTRON	IGF2BP1	ENSG00000159217.10	ENST00000290341.8:ENST00000431824.2:ENST00000515586.5:ENST00000499130.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	45	2	3.10443	4.154195	5.20396	3.67483e-4	5.65393e-5	0.017788000000000002	0.00613846
chr9	124952506	124952606	4350049	0	-	0.34	(0.32,0.35]	chr9	399421	100	UTR3	UTR3:EXON_MRNA	SCAI	ENSG00000173611.18	ENST00000336505.11	protein_coding	protein_coding	protein_coding	protein_coding	3	87	2	2.37199	4.154165	5.93634	0.00465833	2.02056e-4	0.0629753	0.0129814
chr7	111355577	111355677	3622038	0	-	0.29	(0.28,0.32]	chr7	337093	3917	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	118	2	1.84658	4.154045	6.46151	0.0128582	3.61671e-5	0.0990564	0.00508987
chr12	49267870	49267970	5132750	0	+	0.4	(0.378,0.408]	chr12	483870	23	INTRON	INTRON	TUBA1C	ENSG00000167553.17	ENST00000541364.5:ENST00000549818.5:ENST00000552448.1:ENST00000552125.1:ENST00000549183.1:ENST00000301072.11	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	121	2	2.96958	4.153935	5.33829	3.59275e-4	1.45699e-4	0.0169207	0.0110309
chr11	74998913	74999012	4830523	0	+	0.363636	(0.35,0.378]	chr11	450716	38	INTRON	INTRON	NEU3	ENSG00000162139.10	ENST00000531509.5:ENST00000529024.1:ENST00000294064.9:ENST00000532963.1:ENST00000531619.1	protein_coding	protein_coding	protein_coding	protein_coding	1	56	2	2.94111	4.153919999999999	5.3667299999999996	0.0104563	3.99274e-4	0.0855102	0.0179401
chr1	117389685	117389785	197516	0	+	0.3	(0.28,0.32]	chr1	21919	208	INTRON	INTRON	MAN1A2	ENSG00000198162.12	ENST00000356554.7:ENST00000482811.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	26	2	3.88145	4.153875	4.4263	0.0561985	0.0330296	0.18407	0.133816
chr1	171570720	171570819	254090	0	+	0.282828	(0.28,0.32]	chr1	30220	20	INTRON	INTRON	PRRC2C	ENSG00000117523.18	ENST00000647382.2:ENST00000367742.7:ENST00000338920.8:ENST00000426496.6:ENST00000495585.1:ENST00000644916.1	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	3.88145	4.153875	4.4263	0.0561985	0.0330296	0.18407	0.133816
chr10	34794782	34794882	4600090	0	-	0.3	(0.28,0.32]	chr10	423730	980	INTRON	INTRON	PARD3	ENSG00000148498.17	ENST00000545260.5:ENST00000545693.5:ENST00000346874.9:ENST00000350537.9:ENST00000374788.8:ENST00000374789.8:ENST00000374790.8:ENST00000374794.8:ENST00000374776.6:ENST00000340077.9:ENST00000374773.6	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	3.88145	4.153875	4.4263	0.0561985	0.0330296	0.18407	0.133816
chr11	112031336	112031434	4865016	0	+	0.285714	(0.28,0.32]	chr11	453913	20	INTRON	INTRON	DLAT	ENSG00000150768.17	ENST00000280346.11:ENST00000679878.1:ENST00000679815.1:ENST00000679614.1:ENST00000533297.1:ENST00000681339.1:ENST00000681328.1:ENST00000681316.1:ENST00000680010.1:ENST00000527231.2:ENST00000679466.1:ENST00000679829.1:ENST00000681638.1:ENST00000679368.1:ENST00000531306.2:ENST00000393051.5:ENST00000680331.1:ENST00000680411.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	26	2	3.88145	4.153875	4.4263	0.0561985	0.0330296	0.18407	0.133816
chr14	58289213	58289313	5904654	0	-	0.3	(0.28,0.32]	chr14	560834	4	SS3_PROX	SS3_PROX:INTRON	PSMA3-AS1	ENSG00000257621.9	ENST00000554360.5:ENST00000556002.5:ENST00000555275.5:ENST00000554378.5:ENST00000555707.5:ENST00000556400.5:ENST00000557660.5:ENST00000553657.5:ENST00000555037.1:ENST00000551597.6	lncRNA	lncRNA	lncRNA	lncRNA	0	26	2	3.88145	4.153875	4.4263	0.0561985	0.0330296	0.18407	0.133816
chr17	30149101	30149201	6587713	0	+	0.31	(0.28,0.32]	chr17	640563	210	INTRON	INTRON	NSRP1	ENSG00000126653.18	ENST00000540900.7:ENST00000612959.4:ENST00000247026.10:ENST00000577289.6:ENST00000584154.5:ENST00000394826.8:ENST00000475652.5:ENST00000584317.5:ENST00000583301.5:ENST00000585881.5:ENST00000467446.6:ENST00000580103.6:ENST00000581048.5:ENST00000588614.1:ENST00000589608.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	26	2	3.88145	4.153875	4.4263	0.0561985	0.0330296	0.18407	0.133816
chr19	29974502	29974601	7047878	0	+	0.313131	(0.28,0.32]	chr19	702669	29	INTRON	INTRON	URI1	ENSG00000105176.18	ENST00000360605.8:ENST00000570564.5:ENST00000574233.5:ENST00000392271.6:ENST00000574110.5:ENST00000574666.5:ENST00000576442.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	26	2	3.88145	4.153875	4.4263	0.0561985	0.0330296	0.18407	0.133816
chr3	52050215	52050315	1697651	0	-	0.31	(0.28,0.32]	chr3	174552	14	UTR3	UTR3:EXON_MRNA	DUSP7	ENSG00000164086.10	ENST00000495880.2	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	3.88145	4.153875	4.4263	0.0561985	0.0330296	0.18407	0.133816
chr5	163505988	163506086	2531484	0	+	0.387755	(0.378,0.408]	chr5	242264	3	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	MAT2B	ENSG00000038274.18	ENST00000280969.9:ENST00000694938.1:ENST00000519719.1:ENST00000694939.1:ENST00000694940.1:ENST00000694943.1:ENST00000694942.1:ENST00000694941.1:ENST00000694946.1:ENST00000694947.1:ENST00000694945.1:ENST00000694944.1:ENST00000421814.7:ENST00000695023.1:ENST00000520449.2:ENST00000694952.1:ENST00000518095.5:ENST00000694953.1:ENST00000321757.11:ENST00000694954.1:ENST00000694955.1:ENST00000695024.1:ENST00000523606.1:ENST00000695025.1:ENST00000695026.1:ENST00000695027.1:ENST00000695028.1:ENST00000695029.1:ENST00000695030.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	55	2	2.72993	4.153875	5.57782	0.0188736	1.18586e-4	0.108861	0.00930884
chr5	131271952	131272052	2484715	0	+	0.42	(0.408,0.44]	chr5	237114	74	INTRON	INTRON	CDC42SE2	ENSG00000158985.14	ENST00000502840.5:ENST00000511432.5:ENST00000506419.5:ENST00000395246.5:ENST00000505065.2:ENST00000504701.5:ENST00000503291.5:ENST00000360515.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	109	2	3.9868	4.153865	4.32093	1.3698e-4	1.15245e-5	0.0106749	0.00250519
chr7	107424230	107424330	3611627	0	-	0.48	(0.476,0.515]	chr7	336694	112	INTRON	INTRON	COG5	ENSG00000164597.15	ENST00000297135.9:ENST00000347053.8:ENST00000393603.7:ENST00000484237.5:ENST00000475638.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	50	2	3.40003	4.15382	4.90761	0.00386428	0.00139193	0.0542786	0.0341261
chr1	65311337	65311437	136108	0	+	0.54	(0.515,0.57]	chr1	15352	10	INTRON	INTRON	DNAJC6	ENSG00000116675.16	ENST00000463018.5:ENST00000494710.6:ENST00000263441.11:ENST00000395325.7:ENST00000483402.1:ENST00000371069.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	51	2	3.62164	4.15366	4.68568	0.00270027	5.41944e-4	0.0479115	0.0215026
chr12	123193585	123193685	5443655	0	-	0.35	(0.32,0.35]	chr12	520806	120	INTRON	INTRON	MPHOSPH9	ENSG00000051825.15	ENST00000606320.6:ENST00000541076.6:ENST00000545556.6:ENST00000302373.8:ENST00000539024.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	73	2	2.92893	4.15363	5.37833	0.00174321	0.00138	0.0375363	0.0341261
chr2	24663054	24663154	710982	0	+	0.44	(0.408,0.44]	chr2	82237	39	INTRON	INTRON	NCOA1	ENSG00000084676.16	ENST00000348332.8:ENST00000406961.5:ENST00000405141.5:ENST00000407230.5:ENST00000288599.9:ENST00000395856.3	protein_coding	protein_coding	protein_coding	protein_coding	1	50	2	3.41323	4.15325	4.89327	0.00458906	0.00129989	0.0595107	0.0333764
chr16	23958417	23958517	6324985	0	+	0.55	(0.515,0.57]	chr16	605701	647	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000498739.1	protein_coding	protein_coding	protein_coding	protein_coding	2	60	2	2.87626	4.153225	5.43019	0.00136224	2.60422e-4	0.0339121	0.0148796
chr7	140372463	140372562	3661018	0	-	0.424242	(0.408,0.44]	chr7	339845	24	INTRON	INTRON	SLC37A3	ENSG00000157800.18	ENST00000477571.5:ENST00000326232.14:ENST00000447932.6:ENST00000340308.7:ENST00000460560.5:ENST00000490760.5:ENST00000464865.5:ENST00000469193.5:ENST00000461089.5:ENST00000462881.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	51	2	3.55215	4.153065	4.75398	0.00703931	7.01039e-4	0.0718189	0.0241881
chr11	882327	882421	4890179	0	-	0.382979	(0.378,0.408]	chr11	457980	1	EXON_LNCRNA	EXON_LNCRNA:INTRON	CHID1	ENSG00000177830.18	ENST00000323578.13:ENST00000449825.5:ENST00000454838.6:ENST00000529539.5:ENST00000534207.5:ENST00000429789.6:ENST00000528581.5:ENST00000436108.6:ENST00000528521.1:ENST00000526714.5:ENST00000528534.1:ENST00000524832.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	70	2	2.35527	4.153005	5.95074	0.0121511	8.87003e-5	0.0963966	0.00842626
chr2	152675604	152675704	1246091	0	-	0.51	(0.476,0.515]	chr2	132311	15	INTRON	INTRON	PRPF40A	ENSG00000196504.20	ENST00000410080.8:ENST00000545856.8:ENST00000696382.1:ENST00000696381.1:ENST00000354363.11	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	66	2	2.85177	4.152835	5.4539	0.00169916	5.16081e-4	0.0381936	0.0208667
chr1	30945683	30945783	411671	0	-	0.3	(0.28,0.32]	chr1	49632	2	SS3_PROX	SS3_PROX:INTRON	PUM1	ENSG00000134644.16	ENST00000426105.7:ENST00000373747.7:ENST00000257075.9:ENST00000424085.6:ENST00000525843.5:ENST00000440538.6:ENST00000498419.5:ENST00000373741.8:ENST00000373742.6:ENST00000529846.5:ENST00000525997.1:ENST00000527498.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	182	2	4.05055	4.152760000000001	4.25497	7.78524e-5	4.15795e-6	0.00787736	0.0013576
chr2	165934245	165934344	1253771	0	-	0.313131	(0.28,0.32]	chr2	132918	13	EXON_MRNA	EXON_MRNA:INTRON	TTC21B	ENSG00000123607.16	ENST00000680888.1:ENST00000680947.1:ENST00000681083.1:ENST00000681024.1:ENST00000680690.1:ENST00000679676.1:ENST00000679967.1:ENST00000679356.1:ENST00000680327.1:ENST00000681502.1:ENST00000681483.1:ENST00000680657.1:ENST00000679931.1:ENST00000681952.1:ENST00000652557.1:ENST00000679799.1:ENST00000681819.1:ENST00000243344.8:ENST00000679840.1:ENST00000680448.1:ENST00000681606.1:ENST00000679671.1:ENST00000464374.5:ENST00000680698.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	76	2	2.70831	4.15273	5.59715	0.00378444	0.00123856	0.0562562	0.0322669
chr10	70168223	70168322	4640872	0	-	0.282828	(0.28,0.32]	chr10	426918	3	INTRON	INTRON	SAR1A	ENSG00000079332.15	ENST00000373242.6:ENST00000373241.9:ENST00000373239.2	protein_coding	protein_coding	protein_coding	protein_coding	3	92	2	2.56291	4.1526250000000005	5.7423400000000004	0.00227849	7.31742e-4	0.0437013	0.0248722
chr17	39429645	39429742	6766934	0	-	0.402062	(0.378,0.408]	chr17	665553	15	INTRON	INTRON	MED1	ENSG00000125686.12	ENST00000394287.7:ENST00000300651.11:ENST00000577831.5:ENST00000584308.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	51	2	3.4275	4.15256	4.87762	0.00553849	0.00126053	0.0648867	0.03295
chr3	38354452	38354551	1399552	0	+	0.373737	(0.35,0.378]	chr3	146778	55	INTRON	INTRON	XYLB	ENSG00000093217.11	ENST00000427323.5:ENST00000207870.8:ENST00000650590.1:ENST00000424034.5:ENST00000649234.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	57	2	3.21456	4.15254	5.09052	0.00420814	0.00123501	0.0572185	0.0326215
chr17	7575558	7575658	6553822	0	+	0.47	(0.44,0.476]	chr17	636715	4	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	EIF4A1	ENSG00000161960.16	ENST00000293831.13:ENST00000396527.7:ENST00000578495.5:ENST00000578754.5:ENST00000582169.5:ENST00000578476.5:ENST00000584712.5:ENST00000580461.5:ENST00000581544.5:ENST00000584901.5:ENST00000583802.5:ENST00000585024.5:ENST00000582848.5:ENST00000583899.5:ENST00000577269.5:ENST00000584784.5:ENST00000582746.5:ENST00000584860.5:ENST00000581384.5:ENST00000578324.5:ENST00000584798.1:ENST00000577731.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	57	2	2.39604	4.152525000000001	5.90901	0.0404291	7.5486e-5	0.161534	0.00777227
chr4	139142794	139142894	2247003	0	-	0.41	(0.408,0.44]	chr4	219601	29	INTRON	INTRON	ELF2	ENSG00000109381.21	ENST00000394235.6:ENST00000686138.1:ENST00000511184.5:ENST00000511006.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	82	2	2.91156	4.15238	5.3932	7.81492e-4	3.17111e-4	0.0257168	0.0159645
chr14	101892120	101892215	5819826	0	+	0.484211	(0.476,0.515]	chr14	551905	15	INTRON	INTRON	PPP2R5C	ENSG00000078304.20	ENST00000694906.1:ENST00000422945.6:ENST00000328724.9:ENST00000350249.7:ENST00000557621.5:ENST00000334743.9:ENST00000445439.7:ENST00000557095.5:ENST00000554137.5:ENST00000556218.5:ENST00000557534.1:ENST00000557716.2:ENST00000556805.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	53	2	3.24596	4.152215	5.05847	0.00322919	0.00108081	0.0507087	0.0300133
chr7	105028129	105028229	3374757	0	+	0.45	(0.44,0.476]	chr7	315854	132	INTRON	INTRON	KMT2E	ENSG00000005483.22	ENST00000622386.2:ENST00000257745.9:ENST00000334884.9:ENST00000311117.8:ENST00000478990.5:ENST00000480368.5:ENST00000495267.5:ENST00000476671.5:ENST00000667857.1:ENST00000474203.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	99	2	1.86959	4.151985	6.43438	0.0176166	7.64184e-7	0.105146	4.90537e-4
chr12	110391911	110392010	5409078	0	-	0.555556	(0.515,0.57]	chr12	516449	29	INTRON	INTRON	ANAPC7:ENSG00000258210	ENSG00000196510.14:ENSG00000258210.1	ENST00000455511.9:ENST00000450008.3:ENST00000546720.5:ENST00000552170.2:ENST00000550231.1:ENST00000464697.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	48	2	2.83501	4.15191	5.46881	0.0117686	9.03271e-5	0.0894475	0.00795396
chr10	50515730	50515830	4619607	0	-	0.41	(0.408,0.44]	chr10	425446	484	INTRON	INTRON	SGMS1	ENSG00000198964.14	ENST00000429490.5:ENST00000361781.7:ENST00000619438.4:ENST00000609445.5:ENST00000608287.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	53	2	3.00595	4.15187	5.29779	0.00781452	3.80479e-4	0.0759016	0.0176313
chr1	29150002	29150102	410114	0	-	0.41	(0.408,0.44]	chr1	49382	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	SRSF4	ENSG00000116350.18	ENST00000373795.7:ENST00000691479.1:ENST00000634348.1:ENST00000466448.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	79	2	2.53861	4.15119	5.76377	0.00202413	1.64089e-4	0.0416117	0.0116917
chr7	105292427	105292527	3602937	0	-	0.42	(0.408,0.44]	chr7	336144	232	INTRON	INTRON	SRPK2	ENSG00000135250.17	ENST00000393651.8:ENST00000489828.5:ENST00000482897.5:ENST00000460391.5:ENST00000462282.5:ENST00000465112.5:ENST00000482862.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	79	2	2.53861	4.15119	5.76377	0.00202413	1.64089e-4	0.0416117	0.0116917
chr18	50389331	50389430	6900551	0	+	0.30303	(0.28,0.32]	chr18	683688	36	INTRON	INTRON	SKA1	ENSG00000154839.10	ENST00000398452.6:ENST00000417656.6:ENST00000285116.8:ENST00000488454.5:ENST00000494518.1	protein_coding	protein_coding	protein_coding	protein_coding	1	65	2	2.39347	4.15105	5.90863	0.0504457	7.60626e-5	0.156383	0.00731806
chr17	82559039	82559139	6692998	0	+	0.52	(0.515,0.57]	chr17	654627	384	INTRON	INTRON	FOXK2	ENSG00000141568.21	ENST00000473637.6:ENST00000335255.10:ENST00000527313.6:ENST00000570585.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	60	2	2.73258	4.150825	5.56907	0.00260192	1.36543e-4	0.0470772	0.0106702
chr9	92286336	92286435	4287271	0	-	0.353535	(0.35,0.378]	chr9	394250	6	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	IARS1	ENSG00000196305.19	ENST00000375643.7:ENST00000443024.7:ENST00000447699.7:ENST00000683537.1:ENST00000684726.1:ENST00000683192.1:ENST00000683565.1:ENST00000682756.1:ENST00000684542.1:ENST00000683793.1:ENST00000683817.1:ENST00000682141.1:ENST00000682893.1:ENST00000684557.1:ENST00000498025.2:ENST00000682156.1:ENST00000627121.3:ENST00000683469.1:ENST00000683495.1:ENST00000682578.1:ENST00000682533.1:ENST00000472894.2:ENST00000684757.1:ENST00000684445.1:ENST00000683376.1:ENST00000683679.1:ENST00000683119.1:ENST00000490438.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	457	2	3.99358	4.150785	4.30799	1.80977e-7	4.51811e-9	2.10186e-4	2.13333e-5
chr1	65527715	65527815	138262	0	+	0.39	(0.378,0.408]	chr1	15499	15	INTRON	INTRON	LEPR	ENSG00000116678.20	ENST00000371060.7:ENST00000371059.7:ENST00000349533.11:ENST00000616738.4:ENST00000344610.12:ENST00000462765.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	88	2	2.24048	4.1507000000000005	6.06092	0.00867536	9.1834e-6	0.0787771	0.00217645
chr14	45096228	45096325	5714648	0	+	0.298969	(0.28,0.32]	chr14	542472	1	EXON_MRNA	EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PRPF39	ENSG00000185246.18	ENST00000355765.11:ENST00000477626.5:ENST00000424478.5:ENST00000554439.5:ENST00000554429.5:ENST00000556353.1:ENST00000554081.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	118	2	2.30554	4.150315	5.99509	0.00189266	2.74247e-4	0.0402736	0.0151711
chr6	13673713	13673813	3058844	0	-	0.25	[0,0.28]	chr6	284542	145	INTRON	INTRON	RANBP9	ENSG00000010017.13	ENST00000011619.6	protein_coding	protein_coding	protein_coding	protein_coding	1	61	2	3.13926	4.15028	5.1613	0.00866441	0.00563224	0.0787025	0.0678837
chr1	27526285	27526385	54079	0	+	0.48	(0.476,0.515]	chr1	6979	4	SS5_PROX	SS5_PROX:INTRON	ENSG00000237429	ENSG00000237429.1	ENST00000443579.1	lncRNA	lncRNA	lncRNA	lncRNA	2	71	2	2.19809	4.15018	6.10227	0.020317	2.54722e-5	0.121522	0.00416607
chr1	149858290	149858389	549543	0	-	0.585859	(0.57,1]	chr1	64516	37	INTRON	INTRON	H4C15	ENSG00000270276.3	ENST00000621520.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	1	34	2	3.02967	4.15017	5.27067	0.00471306	5.68536e-5	0.0631419	0.00655354
chr21	46166323	46166422	7470263	0	-	0.434343	(0.408,0.44]	chr21	761418	39	INTRON	INTRON	SPATC1L	ENSG00000160284.15	ENST00000330205.10:ENST00000291672.6	protein_coding	protein_coding	protein_coding	protein_coding	1	53	2	2.89795	4.150015	5.40208	0.0110735	2.37882e-4	0.0873897	0.0136195
chr4	94456458	94456558	1998427	0	+	0.41	(0.408,0.44]	chr4	199547	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:INTRON	PDLIM5	ENSG00000163110.15	ENST00000437932.5:ENST00000615540.4:ENST00000318007.9:ENST00000380180.7:ENST00000359265.8:ENST00000514830.5:ENST00000509333.5:ENST00000503974.5:ENST00000317968.9:ENST00000627587.2:ENST00000542407.5:ENST00000514743.5:ENST00000508216.5:ENST00000511767.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	53	2	3.05705	4.14986	5.24267	0.00658331	4.83767e-4	0.0701901	0.0199261
chr7	135488884	135488984	3648749	0	-	0.34	(0.32,0.35]	chr7	339187	501	INTRON	INTRON	CNOT4	ENSG00000080802.20	ENST00000541284.6:ENST00000451834.5:ENST00000423368.6:ENST00000361528.8:ENST00000428680.6:ENST00000315544.6:ENST00000491203.5:ENST00000498534.5:ENST00000465721.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	54	2	2.96746	4.14982	5.33218	0.00815799	0.00204346	0.0810802	0.04086
chr9	19098358	19098457	4236558	0	-	0.474747	(0.44,0.476]	chr9	389435	12	INTRON	INTRON	HAUS6	ENSG00000147874.11	ENST00000380502.8	protein_coding	protein_coding	protein_coding	protein_coding	2	72	2	2.848	4.149485	5.45097	0.00215274	1.90652e-4	0.0417866	0.0120089
chr19	54447964	54448064	7211770	0	-	0.38	(0.378,0.408]	chr19	732165	4	SS5_PROX	SS5_PROX:INTRON	LENG8-AS1	ENSG00000226696.7	ENST00000429922.5:ENST00000416022.1	lncRNA	lncRNA	lncRNA	lncRNA	1	52	2	2.78705	4.149395	5.51174	0.0135539	5.93655e-4	0.101363	0.0225024
chr9	72360379	72360437	4266233	0	-	0.310345	(0.28,0.32]	chr9	392634	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ZFAND5	ENSG00000107372.13	ENST00000376962.10:ENST00000237937.7:ENST00000376960.8:ENST00000488164.5:ENST00000343431.6:ENST00000376956.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	57	2	3.30893	4.148825	4.98872	0.00838468	0.00260504	0.0774402	0.0470772
chr18	26073712	26073811	6959558	0	-	0.252525	[0,0.28]	chr18	688461	48	INTRON	INTRON	SS18	ENSG00000141380.14	ENST00000415083.7:ENST00000542420.6:ENST00000579640.5:ENST00000269138.9:ENST00000269137.11:ENST00000585121.5:ENST00000539244.6:ENST00000585241.5:ENST00000578954.5:ENST00000579061.5:ENST00000577636.5:ENST00000584083.5:ENST00000578700.5:ENST00000582792.5:ENST00000581021.5:ENST00000577572.5:ENST00000582448.5:ENST00000581570.5:ENST00000577751.5:ENST00000580003.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	63	2	3.41114	4.148695	4.88625	0.0173315	0.00211753	0.104099	0.0425644
chr12	132564896	132564995	5251549	0	+	0.606061	(0.57,1]	chr12	499472	43	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1:ENST00000539264.5:ENST00000543360.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	34	2	3.09313	4.148545	5.20396	0.00369015	5.65393e-5	0.0535094	0.00613846
chr19	2149744	2149843	7115534	0	-	0.616162	(0.57,1]	chr19	715270	107	INTRON	INTRON	AP3D1	ENSG00000065000.19	ENST00000643116.3:ENST00000345016.9:ENST00000643010.1:ENST00000591284.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	34	2	3.09313	4.148545	5.20396	0.00369015	5.65393e-5	0.0535094	0.00613846
chr7	72883863	72883963	3329834	0	+	0.37	(0.35,0.378]	chr7	309555	36	INTRON	INTRON	POM121	ENSG00000196313.13	ENST00000627934.3:ENST00000395270.5	protein_coding	protein_coding	protein_coding	protein_coding	2	117	2	3.97215	4.148445000000001	4.32474	1.84105e-4	1.40122e-5	0.0123213	0.00279368
chr11	68614157	68614252	4818906	0	+	0.305263	(0.28,0.32]	chr11	449078	12	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	PPP6R3	ENSG00000110075.15	ENST00000393800.7:ENST00000265637.8:ENST00000524904.5:ENST00000393801.7:ENST00000265636.9:ENST00000529710.5:ENST00000527403.6:ENST00000526307.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	62	2	3.04485	4.14813	5.25141	0.00894006	0.00125199	0.0799922	0.0328543
chr16	4471113	4471213	6437586	0	-	0.32	(0.28,0.32]	chr16	619902	4	SS5_PROX	SS5_PROX:INTRON	NMRAL1	ENSG00000153406.14	ENST00000574733.5:ENST00000283429.11:ENST00000404295.7:ENST00000574425.5:ENST00000571291.5:ENST00000573520.5:ENST00000573571.1:ENST00000575002.5:ENST00000575557.5:ENST00000576935.5:ENST00000575995.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	62	2	3.04485	4.14813	5.25141	0.00894006	0.00125199	0.0799922	0.0328543
chr7	158821048	158821148	3689729	0	-	0.21	[0,0.28]	chr7	342421	216	INTRON	INTRON	ESYT2	ENSG00000117868.18	ENST00000251527.10:ENST00000275418.13:ENST00000652148.1:ENST00000483958.5:ENST00000497111.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	114	2	2.28734	4.147705	6.00807	0.00414216	6.0063e-4	0.0589205	0.0226059
chr16	90038348	90038444	6423813	0	+	0.458333	(0.44,0.476]	chr16	617136	1	INTRON	INTRON	GAS8	ENSG00000141013.17	ENST00000536122.7:ENST00000620723.4:ENST00000540721.5:ENST00000268699.9:ENST00000566266.5:ENST00000569558.5:ENST00000569399.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	66	2	2.59888	4.14748	5.69608	0.00487719	2.01872e-4	0.0640618	0.0129814
chr5	104253180	104253280	2442947	0	+	0.28	[0,0.28]	chr5	234410	1479	INTRON	INTRON	LINC02163	ENSG00000251026.2	ENST00000662211.1:ENST00000666145.1	lncRNA	lncRNA	lncRNA	lncRNA	1	67	2	2.89982	4.147385	5.39495	0.0158893	0.00133175	0.101453	0.0335129
chr7	158746302	158746401	3688968	0	-	0.525253	(0.515,0.57]	chr7	342335	22	INTRON	INTRON	ESYT2	ENSG00000117868.18	ENST00000251527.10:ENST00000275418.13:ENST00000652148.1	protein_coding	protein_coding	protein_coding	protein_coding	4	165	2	4.03357	4.147365000000001	4.26116	2.39416e-6	2.51157e-7	0.0010767	2.45195e-4
chr17	57310326	57310426	6633292	0	+	0.5	(0.476,0.515]	chr17	648022	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000581776.5:ENST00000674961.1:ENST00000582453.5:ENST00000675656.1:ENST00000322684.7:ENST00000579590.5:ENST00000676073.1:ENST00000675822.1:ENST00000442934.6:ENST00000579180.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	70	2	2.58253	4.14734	5.71215	0.00600101	5.54639e-5	0.0674604	0.00609037
chr6	4815600	4815700	2791254	0	+	0.24	[0,0.28]	chr6	263598	384	INTRON	INTRON	CDYL	ENSG00000153046.18	ENST00000328908.9:ENST00000491864.1:ENST00000440139.5:ENST00000483019.1:ENST00000397588.8:ENST00000472453.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	82	2	2.62985	4.14679	5.66373	0.00581422	0.00196371	0.068681	0.0401678
chrX	121215528	121215628	7715345	0	+	0.39	(0.378,0.408]	chrX	789390	293	INTRON	INTRON	ENSG00000286163	ENSG00000286163.1	ENST00000651788.1	lncRNA	lncRNA	lncRNA	lncRNA	2	67	2	2.86955	4.146565	5.42358	0.00159247	8.39231e-4	0.0367961	0.0266487
chr4	760378	760478	1908345	0	+	0.37	(0.35,0.378]	chr4	191255	153	INTRON	INTRON	PCGF3	ENSG00000185619.18	ENST00000362003.9:ENST00000470161.6:ENST00000430644.5:ENST00000440452.5:ENST00000488032.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	56	2	2.78212	4.146155	5.51019	0.0168532	2.10803e-4	0.103549	0.0126882
chr2	219217332	219217411	1331145	0	-	0.518987	(0.515,0.57]	chr2	139489	1	SS5_PROX	SS5_PROX:INTRON	ABCB6	ENSG00000115657.14	ENST00000295750.5:ENST00000265316.9:ENST00000448398.5:ENST00000417678.5:ENST00000452545.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	46	2	2.9114	4.14608	5.38076	0.00826019	3.24968e-4	0.0813266	0.0165891
chr11	3753508	3753608	4894722	0	-	0.26	[0,0.28]	chr11	458875	1	SS3_PROX	SS3_PROX:INTRON	NUP98	ENSG00000110713.17	ENST00000359171.8:ENST00000324932.12:ENST00000650171.1:ENST00000355260.7:ENST00000397004.8:ENST00000397007.8:ENST00000527104.5:ENST00000529379.1:ENST00000397013.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	61	2	3.18138	4.145855	5.11033	0.00991388	0.00487606	0.0838372	0.0640618
chr20	32805807	32805907	7257126	0	+	0.43	(0.408,0.44]	chr20	737234	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DNMT3B	ENSG00000088305.19	ENST00000696232.1:ENST00000328111.6:ENST00000696231.1:ENST00000348286.6:ENST00000353855.6:ENST00000696233.1:ENST00000443239.7:ENST00000456297.6:ENST00000201963.3:ENST00000696238.1:ENST00000696239.1:ENST00000696245.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	100	2	2.20396	4.145805	6.08765	0.00235889	3.51008e-5	0.0445848	0.00499276
chr1	8560420	8560519	371204	0	-	0.484848	(0.476,0.515]	chr1	43517	25	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000400907.6:ENST00000656437.1:ENST00000659924.1:ENST00000480342.5:ENST00000469251.1:ENST00000514428.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	52	2	2.99852	4.145665	5.29281	0.0077575	4.07635e-4	0.0757402	0.0181306
chr8	129521479	129521578	4060497	0	-	0.262626	[0,0.28]	chr8	369648	109	INTRON	INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1:ENST00000676273.1:ENST00000667643.1:ENST00000668791.1:ENST00000663716.1:ENST00000663572.1:ENST00000676148.1:ENST00000667962.1:ENST00000674877.1:ENST00000675316.1:ENST00000674656.1:ENST00000446592.7:ENST00000667341.1:ENST00000675186.1:ENST00000652971.1:ENST00000661447.1:ENST00000674863.1:ENST00000675498.1:ENST00000675527.1:ENST00000676108.1:ENST00000657647.1:ENST00000675589.1:ENST00000675913.1:ENST00000675109.1:ENST00000671632.1:ENST00000671311.1:ENST00000676099.1:ENST00000660652.1:ENST00000675522.1:ENST00000675183.1:ENST00000658861.1:ENST00000663991.1:ENST00000675044.1:ENST00000675435.1:ENST00000674639.1:ENST00000676069.1:ENST00000675532.1:ENST00000674762.1:ENST00000523151.6:ENST00000675948.1:ENST00000665364.1:ENST00000657251.1:ENST00000675166.1:ENST00000674883.1:ENST00000675867.1:ENST00000674580.1:ENST00000675393.1:ENST00000520048.1:ENST00000674906.1:ENST00000676030.1:ENST00000670588.1:ENST00000675072.1:ENST00000664936.1:ENST00000652914.1:ENST00000657069.1	lncRNA	lncRNA	lncRNA	lncRNA	1	61	2	2.8569	4.14559	5.43428	0.013822	0.00400834	0.10247	0.0551303
chr3	25616375	25616471	1641647	0	-	0.21875	[0,0.28]	chr3	168473	4	INTRON	INTRON	TOP2B	ENSG00000077097.16	ENST00000264331.9:ENST00000413971.5:ENST00000435706.6:ENST00000424225.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	82	2	2.6632	4.1455649999999995	5.62793	0.00515076	0.0022037	0.0650394	0.0417893
chr1	24673181	24673281	46059	0	+	0.19	[0,0.28]	chr1	5759	10	UTR3	UTR3:EXON_MRNA	SRRM1	ENSG00000133226.18	ENST00000323848.14	protein_coding	protein_coding	protein_coding	protein_coding	4	253	2	3.03152	4.145515	5.25951	6.64225e-4	1.53407e-7	0.023494	1.79791e-4
chr3	172771918	172772017	1563439	0	+	0.282828	(0.28,0.32]	chr3	161777	24	INTRON	INTRON	ECT2	ENSG00000114346.14	ENST00000232458.9:ENST00000540509.5:ENST00000392692.8:ENST00000417960.5:ENST00000441497.6:ENST00000444250.1	protein_coding	protein_coding	protein_coding	protein_coding	5	129	2	2.73228	4.145365	5.55845	0.00141854	2.21852e-4	0.0340865	0.0130831
chr1	109329192	109329291	520317	0	-	0.373737	(0.35,0.378]	chr1	61131	12	INTRON	INTRON	SORT1	ENSG00000134243.12	ENST00000538502.5:ENST00000256637.8:ENST00000466471.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	53	2	3.49967	4.14523	4.79079	0.00846427	9.80974e-4	0.0776969	0.0287765
chr3	177114652	177114751	1871612	0	-	0.373737	(0.35,0.378]	chr3	187408	34	INTRON	INTRON	TBL1XR1	ENSG00000177565.18	ENST00000457928.7:ENST00000430069.5:ENST00000673974.1:ENST00000352800.10:ENST00000422442.6:ENST00000428970.5:ENST00000424913.5:ENST00000437738.5:ENST00000431421.5:ENST00000635794.1:ENST00000630796.2:ENST00000450267.5:ENST00000630833.2:ENST00000431674.5:ENST00000422066.5:ENST00000443315.5:ENST00000627825.2:ENST00000427349.5:ENST00000413084.5:ENST00000637137.1:ENST00000491623.2:ENST00000637544.1:ENST00000636478.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	53	2	3.49967	4.14523	4.79079	0.00846427	9.80974e-4	0.0776969	0.0287765
chr7	152364571	152364671	3680579	0	-	0.36	(0.35,0.378]	chr7	341660	55	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000682301.1:ENST00000452749.2:ENST00000680867.1:ENST00000683800.1:ENST00000684278.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	53	2	3.49967	4.14523	4.79079	0.00846427	9.80974e-4	0.0776969	0.0287765
chr7	140336198	140336296	3660640	0	-	0.489796	(0.476,0.515]	chr7	339779	3	INTRON	INTRON	SLC37A3	ENSG00000157800.18	ENST00000477571.5:ENST00000326232.14:ENST00000447932.6:ENST00000340308.7:ENST00000473060.5:ENST00000469636.1:ENST00000498469.5:ENST00000491357.5:ENST00000485538.1:ENST00000492027.5:ENST00000477006.1:ENST00000460560.5:ENST00000485734.1:ENST00000485139.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	66	2	2.93046	4.145205000000001	5.35995	0.00118985	7.54256e-4	0.031662	0.0251179
chr6	31650127	31650220	3079003	0	-	0.354839	(0.35,0.378]	chr6	286870	1	INTRON	INTRON	BAG6	ENSG00000204463.14	ENST00000211379.9:ENST00000679119.1:ENST00000375964.11:ENST00000676571.1:ENST00000676615.2:ENST00000375976.8:ENST00000362049.10:ENST00000439687.6:ENST00000437771.5:ENST00000435080.5:ENST00000456622.5:ENST00000452994.5:ENST00000434444.5:ENST00000428326.5:ENST00000451898.5:ENST00000433828.5:ENST00000424480.5:ENST00000424176.5:ENST00000441054.5:ENST00000456286.5:ENST00000454165.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	83	2	2.59827	4.14508	5.69189	0.0016492	3.71413e-4	0.0375159	0.0178698
chr20	63213363	63213463	7362753	0	-	0.59	(0.57,1]	chr20	751231	1	SS5_PROX	SS5_PROX:INTRON	YTHDF1	ENSG00000149658.18	ENST00000370339.8:ENST00000370334.4	protein_coding	protein_coding	protein_coding	protein_coding	4	94	2	3.3877100000000002	4.144765	4.90182	9.08966e-6	3.19465e-8	0.00231903	7.06652e-5
chr5	132180761	132180861	2720787	0	-	0.37	(0.35,0.378]	chr5	255746	4	SS5_PROX	SS5_PROX:INTRON	ENSG00000224015	ENSG00000224015.1	ENST00000457890.1	lncRNA	lncRNA	lncRNA	lncRNA	4	108	2	2.45453	4.14471	5.83489	0.00197756	4.33823e-5	0.0404009	0.00532052
chr2	241683015	241683115	1349401	0	-	0.54	(0.515,0.57]	chr2	141810	1	SS3_PROX	SS3_PROX:INTRON	DTYMK	ENSG00000168393.13	ENST00000400770.6:ENST00000305784.7:ENST00000445261.5:ENST00000432348.5:ENST00000420144.1:ENST00000493095.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	148	2	3.56418	4.144685	4.72519	4.30909e-6	1.00012e-6	0.00139488	6.19632e-4
chr15	80079815	80079915	6071240	0	+	0.48	(0.476,0.515]	chr15	578322	41	INTRON	INTRON	ZFAND6	ENSG00000086666.19	ENST00000613266.4:ENST00000561060.5:ENST00000559157.5:ENST00000261749.11:ENST00000561012.5:ENST00000564367.5:ENST00000558494.5:ENST00000618205.4:ENST00000560470.5:ENST00000560228.5:ENST00000559835.5:ENST00000559775.5:ENST00000558688.5:ENST00000560976.5:ENST00000560392.5:ENST00000558390.5:ENST00000558272.5:ENST00000557793.1:ENST00000616533.4:ENST00000558087.5:ENST00000558997.5:ENST00000558724.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	52	2	3.05152	4.144605	5.23769	0.0064848	5.17244e-4	0.0699952	0.0203753
chr10	70151278	70151377	4640686	0	-	0.313131	(0.28,0.32]	chr10	426863	41	UTR3	UTR3:EXON_MRNA	SAR1A	ENSG00000079332.15	ENST00000373242.6:ENST00000373241.9:ENST00000373238.5:ENST00000431664.6	protein_coding	protein_coding	protein_coding	protein_coding	5	116	2	2.12972	4.144495	6.15927	0.00413957	1.38706e-4	0.0588921	0.0107072
chr1	39573165	39573261	427760	0	-	0.291667	(0.28,0.32]	chr1	51951	7	EXON_MRNA	EXON_MRNA:INTRON	PABPC4	ENSG00000090621.15	ENST00000677006.1:ENST00000372858.8:ENST00000372856.7:ENST00000372857.7:ENST00000372862.7:ENST00000676523.1:ENST00000677548.1:ENST00000678980.1:ENST00000677244.1:ENST00000677609.1:ENST00000679246.1:ENST00000678287.1:ENST00000678625.1:ENST00000470443.6:ENST00000451091.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	137	2	4.03338	4.144175000000001	4.25497	1.04313e-4	7.78524e-5	0.00863456	0.00787736
chr2	151449728	151449827	893623	0	+	0.272727	[0,0.28]	chr2	98976	28	INTRON	INTRON	RIF1	ENSG00000080345.18	ENST00000453091.6:ENST00000428287.6:ENST00000444746.7:ENST00000243326.9:ENST00000414861.6:ENST00000430328.6	protein_coding	protein_coding	protein_coding	protein_coding	3	110	2	2.05547	4.144095	6.23272	0.0218514	3.87936e-5	0.11491	0.00503037
chr10	74177785	74177885	4456034	0	+	0.44	(0.408,0.44]	chr10	411534	5	INTRON	INTRON	ADK	ENSG00000156110.15	ENST00000672429.1:ENST00000539909.6:ENST00000286621.7:ENST00000478611.2:ENST00000673352.1:ENST00000673310.1:ENST00000672920.1:ENST00000672394.1:ENST00000372734.5:ENST00000673027.1:ENST00000541550.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	71	2	2.6117	4.143924999999999	5.67615	0.00555224	6.28788e-5	0.0648867	0.00658818
chr7	50316005	50316105	3316813	0	+	0.36	(0.35,0.378]	chr7	308247	67	INTRON	INTRON	IKZF1	ENSG00000185811.20	ENST00000642219.1:ENST00000645066.1:ENST00000484847.6:ENST00000646110.1:ENST00000331340.8:ENST00000413698.5:ENST00000349824.8:ENST00000343574.9:ENST00000357364.8:ENST00000440768.6:ENST00000346667.8:ENST00000615491.4:ENST00000359197.9:ENST00000439701.2:ENST00000438033.5:ENST00000492782.6:ENST00000462201.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	52	2	2.92952	4.1439	5.35828	0.00881187	0.00135282	0.084878	0.0336321
chr3	194429257	194429337	1890595	0	-	0.275	[0,0.28]	chr3	189132	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ATP13A3	ENSG00000133657.17	ENST00000687055.1:ENST00000645538.1:ENST00000645319.2:ENST00000690810.1:ENST00000429136.7:ENST00000645621.1:ENST00000685123.1:ENST00000642744.2:ENST00000439040.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	67	2	2.64309	4.143865	5.64464	0.0308646	5.16173e-4	0.13151	0.0203753
chr2	107701257	107701356	1205561	0	-	0.222222	[0,0.28]	chr2	128520	18	INTRON	INTRON	LINC01885:ENSG00000286769	ENSG00000237880.2:ENSG00000286769.1	ENST00000654481.1:ENST00000669817.1	lncRNA	lncRNA	lncRNA	lncRNA	1	67	2	2.9385	4.143645	5.34879	0.0142776	0.00157139	0.0963703	0.0365659
chr7	111404904	111405004	3622535	0	-	0.35	(0.32,0.35]	chr7	337108	121	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000452895.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding	2	125	2	4.1403	4.14359	4.14688	9.76776e-5	4.80124e-5	0.00889684	0.00566483
chr7	119878414	119878513	3630125	0	-	0.363636	(0.35,0.378]	chr7	337335	772	INTRON	INTRON	LINC02476	ENSG00000225546.6	ENST00000660268.1:ENST00000431071.5:ENST00000426413.2	lncRNA	lncRNA	lncRNA	lncRNA	4	211	2	4.12303	4.143375	4.16372	3.26797e-6	1.46022e-6	0.00128387	7.23568e-4
chr20	49234180	49234274	7284484	0	+	0.585106	(0.57,1]	chr20	741007	6	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	DDX27	ENSG00000124228.15	ENST00000484427.5:ENST00000618172.5:ENST00000471144.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	45	2	2.58733	4.143305	5.69928	0.00454222	2.48853e-6	0.0595107	0.00100001
chr3	184244328	184244418	1882674	0	-	0.466667	(0.44,0.476]	chr3	188266	1	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ALG3	ENSG00000214160.10	ENST00000397676.8:ENST00000411922.5:ENST00000445626.6:ENST00000455059.5:ENST00000446569.1:ENST00000414845.5:ENST00000462735.6:ENST00000423996.5:ENST00000477959.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	67	2	2.44514	4.143305	5.84147	0.0087381	1.03947e-4	0.0845538	0.00915599
chr1	236875046	236875146	343321	0	+	0.33	(0.32,0.35]	chr1	39955	2	SS5_PROX	SS5_PROX:INTRON	MTR	ENSG00000116984.15	ENST00000680454.1:ENST00000366577.10:ENST00000674797.2:ENST00000679569.1:ENST00000650888.1:ENST00000535889.6:ENST00000651455.1:ENST00000681102.1:ENST00000679842.1:ENST00000681177.1:ENST00000681937.1:ENST00000366576.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	54	2	2.90786	4.143095	5.37833	0.00993008	0.00174321	0.0877296	0.0375363
chr7	100309522	100309622	3586503	0	-	0.54	(0.515,0.57]	chr7	334330	84	INTRON	INTRON	PMS2P1	ENSG00000078319.11	ENST00000685724.1:ENST00000692351.1:ENST00000685541.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	4	165	2	4.13346	4.142945	4.15243	1.2129e-6	5.73684e-7	7.07699e-4	4.09468e-4
chr15	74683109	74683209	6222194	0	-	0.39	(0.378,0.408]	chr15	594093	28	INTRON	INTRON	EDC3	ENSG00000179151.13	ENST00000315127.9:ENST00000647659.1:ENST00000565602.5:ENST00000426797.7:ENST00000568176.5:ENST00000566219.1:ENST00000563009.5:ENST00000569561.5:ENST00000566243.5:ENST00000566828.5:ENST00000570138.5:ENST00000563292.1:ENST00000569007.1:ENST00000567813.1:ENST00000566119.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	54	2	2.84663	4.142775	5.43892	0.0133954	2.28412e-4	0.0946278	0.0133228
chr21	44047095	44047195	7415382	0	+	0.38	(0.378,0.408]	chr21	755795	88	INTRON	INTRON	TRAPPC10	ENSG00000160218.13	ENST00000291574.9:ENST00000380221.7:ENST00000422875.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	54	2	2.84663	4.142775	5.43892	0.0133954	2.28412e-4	0.0946278	0.0133228
chr1	24673082	24673181	46058	0	+	0.40404	(0.378,0.408]	chr1	5759	9	UTR3	UTR3:EXON_MRNA	SRRM1	ENSG00000133226.18	ENST00000323848.14	protein_coding	protein_coding	protein_coding	protein_coding	5	104	2	2.46651	4.14261	5.81871	6.45662e-4	1.62088e-4	0.023017	0.0116382
chr14	101834084	101834183	5819233	0	+	0.474747	(0.44,0.476]	chr14	551866	19	INTRON	INTRON	PPP2R5C	ENSG00000078304.20	ENST00000694906.1:ENST00000422945.6:ENST00000554442.5:ENST00000328724.9:ENST00000553890.1:ENST00000350249.7:ENST00000557621.5:ENST00000556946.1:ENST00000556307.5:ENST00000553730.5:ENST00000557714.1:ENST00000334743.9:ENST00000445439.7:ENST00000557095.5:ENST00000556493.1:ENST00000553842.1:ENST00000556373.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	49	2	3.25801	4.14252	5.02703	0.00278015	0.00248185	0.0469265	0.0460771
chr16	16555198	16555298	6311414	0	+	0.45	(0.44,0.476]	chr16	604098	552	INTRON	INTRON	ENSG00000260126	ENSG00000260126.2	ENST00000567465.2	lncRNA	lncRNA	lncRNA	lncRNA	1	53	2	3.22192	4.1424	5.06288	0.00360821	0.00102416	0.0533855	0.0294041
chr9	100429662	100429762	4178813	0	+	0.46	(0.44,0.476]	chr9	380941	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	MSANTD3	ENSG00000066697.15	ENST00000395067.7:ENST00000398977.2:ENST00000374885.5:ENST00000622639.4:ENST00000374886.7:ENST00000613183.1	protein_coding	protein_coding	protein_coding	protein_coding	1	53	2	3.22192	4.1424	5.06288	0.00360821	0.00102416	0.0533855	0.0294041
chr12	123160187	123160285	5443305	0	-	0.469388	(0.44,0.476]	chr12	520750	6	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	MPHOSPH9	ENSG00000051825.15	ENST00000541603.6:ENST00000606320.6:ENST00000541076.6:ENST00000545974.5:ENST00000545556.6:ENST00000302373.8:ENST00000606704.1:ENST00000539024.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	49	2	3.08591	4.142355	5.1988	0.00481262	0.00151532	0.0638089	0.0352794
chr19	52712564	52712659	7207254	0	-	0.452632	(0.44,0.476]	chr19	731448	9	INTRON	INTRON	ZNF611	ENSG00000213020.10	ENST00000540744.5:ENST00000543227.5:ENST00000453741.6:ENST00000652185.1:ENST00000595001.5:ENST00000602162.5:ENST00000319783.5:ENST00000595798.5:ENST00000601249.5:ENST00000601643.5:ENST00000600943.5:ENST00000598639.5:ENST00000597343.6:ENST00000598723.5:ENST00000640952.1:ENST00000596702.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	49	2	3.08591	4.142355	5.1988	0.00481262	0.00151532	0.0638089	0.0352794
chr11	66620445	66620545	4810837	0	+	0.46	(0.44,0.476]	chr11	447856	2	SS3_PROX	SS3_PROX:INTRON	RBM14-RBM4:RBM14	ENSG00000248643.5:ENSG00000239306.5	ENST00000412278.2:ENST00000393979.3:ENST00000511114.1:ENST00000310137.5:ENST00000409372.1:ENST00000421355.1:ENST00000443702.1:ENST00000500635.2:ENST00000409738.4:ENST00000461478.1:ENST00000496694.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	109	2	4.03385	4.142205000000001	4.25056	6.14604e-5	3.33797e-5	0.0064891	0.00487221
chr1	35187565	35187658	420544	0	-	0.462366	(0.44,0.476]	chr1	50664	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SFPQ	ENSG00000116560.12	ENST00000470472.5:ENST00000460428.5:ENST00000696553.1:ENST00000357214.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	492	2	3.03903	4.142125	5.24522	1.97512e-6	7.47082e-11	8.55184e-4	8.34692e-7
chr7	148881702	148881801	3670738	0	-	0.515152	(0.476,0.515]	chr7	340632	105	INTRON	INTRON	EZH2	ENSG00000106462.12	ENST00000683292.1:ENST00000320356.7:ENST00000492143.5:ENST00000478654.5:ENST00000350995.6:ENST00000460911.5:ENST00000683744.1:ENST00000682317.1:ENST00000682263.1:ENST00000476773.5:ENST00000483967.5:ENST00000498186.5:ENST00000483012.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	53	2	3.29074	4.14208	4.99342	0.00272563	0.00139274	0.0467523	0.0341261
chr8	94837223	94837315	3800260	0	+	0.23913	[0,0.28]	chr8	352363	2	INTRON	INTRON	INTS8	ENSG00000164941.14	ENST00000523731.6:ENST00000524333.5:ENST00000523321.5:ENST00000343161.8:ENST00000523206.5:ENST00000520526.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	62	2	3.33854	4.142075	4.94561	0.0150263	0.00278022	0.0994339	0.0488412
chr8	60545251	60545351	3758083	0	+	0.44	(0.408,0.44]	chr8	349495	276	INTRON	INTRON	RAB2A	ENSG00000104388.15	ENST00000531289.5:ENST00000262646.12:ENST00000481569.1:ENST00000529579.5:ENST00000466595.5:ENST00000429861.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	49	2	3.14706	4.14204	5.13702	0.00382411	0.00202889	0.0562562	0.04086
chr13	113186051	113186149	5651823	0	-	0.408163	(0.378,0.408]	chr13	538587	6	EXON_LNCRNA	EXON_LNCRNA:SS3_PROX:INTRON	PCID2	ENSG00000126226.22	ENST00000337344.9:ENST00000622406.4:ENST00000375479.6:ENST00000375477.5:ENST00000246505.9:ENST00000375459.5:ENST00000493650.5:ENST00000375457.2:ENST00000473462.5:ENST00000475433.5:ENST00000480971.5:ENST00000484641.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	80	2	2.53602	4.141945	5.74787	0.0020933	2.21531e-4	0.0424943	0.0136064
chr21	37455230	37455329	7407114	0	+	0.444444	(0.44,0.476]	chr21	754891	245	INTRON	INTRON	DYRK1A	ENSG00000157540.22	ENST00000646523.1:ENST00000647425.1:ENST00000647188.2:ENST00000647504.1:ENST00000644942.1:ENST00000338785.8:ENST00000643624.1:ENST00000643551.1:ENST00000426672.6:ENST00000398960.7:ENST00000646548.1:ENST00000645424.1:ENST00000643854.1:ENST00000455097.6:ENST00000642309.1:ENST00000645774.1:ENST00000398956.2	protein_coding	protein_coding	protein_coding	protein_coding	1	52	2	3.67739	4.14193	4.60647	0.0102339	3.8961e-4	0.0850389	0.0177751
chr20	32411095	32411194	7256354	0	+	0.30303	(0.28,0.32]	chr20	737076	387	INTRON	INTRON	ASXL1	ENSG00000171456.21	ENST00000651418.1:ENST00000375687.10:ENST00000613218.4:ENST00000644587.1:ENST00000620121.4:ENST00000646985.1:ENST00000643168.1:ENST00000306058.9:ENST00000645688.1:ENST00000470145.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	62	2	2.62686	4.141905	5.65695	0.0289217	2.41184e-4	0.1274	0.0136674
chr5	134846509	134846598	2491289	0	+	0.516854	(0.515,0.57]	chr5	238020	4	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DDX46:C5orf24	ENSG00000145833.16:ENSG00000181904.9	ENST00000507053.1:ENST00000338051.4:ENST00000394976.4:ENST00000504727.1:ENST00000435259.2:ENST00000508791.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	82	2	2.20043	4.14189	6.08335	0.00392045	9.19549e-6	0.0570863	0.00233911
chr10	97745115	97745215	4505370	0	+	0.4	(0.378,0.408]	chr10	414789	2	SS5_PROX	SS5_PROX:INTRON	ZFYVE27	ENSG00000155256.18	ENST00000337540.11:ENST00000370613.7:ENST00000370610.7:ENST00000357540.8:ENST00000393677.8:ENST00000423811.3:ENST00000684270.1:ENST00000359980.5	protein_coding	protein_coding	protein_coding	protein_coding	1	50	2	3.27907	4.141830000000001	5.00459	0.00371142	0.0023379	0.0535094	0.0442989
chr3	197236258	197236358	1902886	0	-	0.38	(0.378,0.408]	chr3	190659	100	INTRON	INTRON	DLG1	ENSG00000075711.21	ENST00000667157.1:ENST00000346964.6:ENST00000663148.1:ENST00000655488.1:ENST00000357674.9:ENST00000671185.1:ENST00000658701.1:ENST00000667104.1:ENST00000661336.1:ENST00000669565.1:ENST00000670455.1:ENST00000656087.1:ENST00000670366.1:ENST00000661453.1:ENST00000665728.1:ENST00000664564.1:ENST00000660432.1:ENST00000660898.1:ENST00000657381.1:ENST00000659221.1:ENST00000654737.1:ENST00000669332.1:ENST00000659716.1:ENST00000664991.1:ENST00000419354.5:ENST00000661440.1:ENST00000667971.1:ENST00000670935.1:ENST00000666007.1:ENST00000661229.1:ENST00000661013.1:ENST00000436682.6:ENST00000662727.1:ENST00000422288.6:ENST00000448528.6:ENST00000656944.1:ENST00000392382.6:ENST00000450955.5:ENST00000658155.1:ENST00000669714.1:ENST00000654733.1:ENST00000419227.5:ENST00000392381.7:ENST00000471733.5:ENST00000419553.6:ENST00000661808.1:ENST00000453607.5:ENST00000456699.6:ENST00000392380.6:ENST00000485409.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	50	2	3.27907	4.141830000000001	5.00459	0.00371142	0.0023379	0.0535094	0.0442989
chr19	11105700	11105791	7016980	0	+	0.307692	(0.28,0.32]	chr19	697438	1	SS5_PROX	SS5_PROX:INTRON	LDLR	ENSG00000130164.14	ENST00000557933.5:ENST00000558518.6:ENST00000545707.5:ENST00000535915.5:ENST00000455727.6:ENST00000558013.5:ENST00000252444.9:ENST00000560467.1	protein_coding	protein_coding	protein_coding	protein_coding	5	298	2	3.77365	4.14178	4.50991	3.40065e-6	9.9161e-7	0.00120209	6.18517e-4
chrX	73971373	73971472	7682372	0	+	0.59596	(0.57,1]	chrX	786638	30	INTRON	INTRON	JPX	ENSG00000225470.8	ENST00000664637.1:ENST00000639185.1:ENST00000655090.1:ENST00000640437.1:ENST00000660546.1:ENST00000667886.1:ENST00000660840.1:ENST00000657179.1:ENST00000670506.1:ENST00000657910.1:ENST00000662120.1:ENST00000671207.1:ENST00000659254.1:ENST00000656624.1:ENST00000667573.1:ENST00000660856.1:ENST00000660836.1:ENST00000668590.1:ENST00000658649.1:ENST00000414209.6:ENST00000654137.1:ENST00000670994.1:ENST00000602772.5:ENST00000655879.1:ENST00000657372.1:ENST00000657096.1:ENST00000602985.6:ENST00000670685.1:ENST00000670503.1:ENST00000663027.1:ENST00000654995.1:ENST00000602895.6:ENST00000654374.1:ENST00000660087.1:ENST00000665032.1:ENST00000671336.1:ENST00000671476.1:ENST00000667057.1:ENST00000670192.1:ENST00000670464.1:ENST00000665345.1:ENST00000661546.1:ENST00000662543.1:ENST00000602938.6:ENST00000664295.1:ENST00000654005.1:ENST00000669149.1:ENST00000659852.1:ENST00000656509.1:ENST00000602294.6:ENST00000667294.1:ENST00000663470.1:ENST00000602920.6:ENST00000671021.1:ENST00000659849.1:ENST00000667937.1:ENST00000661130.1:ENST00000654196.1:ENST00000655994.1:ENST00000659373.1:ENST00000662239.1:ENST00000670805.1:ENST00000656263.1:ENST00000653069.1:ENST00000657638.1:ENST00000653808.1:ENST00000653929.1:ENST00000653885.1:ENST00000659023.1:ENST00000602546.5:ENST00000659622.1:ENST00000671518.1:ENST00000670408.1	lncRNA	lncRNA	lncRNA	lncRNA	1	33	2	3.48337	4.14174	4.80011	6.20854e-4	6.07135e-4	0.0226059	0.0223951
chr1	200594665	200594764	617473	0	-	0.353535	(0.35,0.378]	chr1	73022	5	INTRON	INTRON	KIF14	ENSG00000118193.12	ENST00000614960.4:ENST00000367350.5	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	3.80129	4.141565	4.48184	0.0504034	0.0191702	0.17488	0.108861
chr10	35040093	35040192	4600639	0	-	0.363636	(0.35,0.378]	chr10	423813	6	INTRON	INTRON	CUL2	ENSG00000108094.17	ENST00000626172.3:ENST00000374751.7:ENST00000374748.5:ENST00000374749.8:ENST00000690123.1:ENST00000537177.6:ENST00000374746.6:ENST00000691974.1:ENST00000688571.1:ENST00000690393.1:ENST00000690092.1:ENST00000374754.9:ENST00000691272.1:ENST00000688390.1:ENST00000687282.1:ENST00000691201.1:ENST00000687194.1:ENST00000691962.1:ENST00000691858.1:ENST00000691263.1:ENST00000687524.1:ENST00000673636.2:ENST00000692866.1:ENST00000693739.1:ENST00000686302.1:ENST00000685681.1:ENST00000421317.5:ENST00000684965.1:ENST00000691457.1:ENST00000688541.1:ENST00000689330.1:ENST00000685488.1:ENST00000686748.1:ENST00000690789.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	25	2	3.80129	4.141565	4.48184	0.0504034	0.0191702	0.17488	0.108861
chr17	61828042	61828142	6808579	0	-	0.36	(0.35,0.378]	chr17	672605	189	INTRON	INTRON	BRIP1	ENSG00000136492.10	ENST00000259008.7:ENST00000682755.1:ENST00000682453.1:ENST00000683039.1:ENST00000682989.1:ENST00000682589.1:ENST00000683235.1:ENST00000682477.1:ENST00000684584.1:ENST00000577598.5:ENST00000682066.1:ENST00000584322.2:ENST00000683381.1:ENST00000579028.2:ENST00000682611.1:ENST00000683692.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	25	2	3.80129	4.141565	4.48184	0.0504034	0.0191702	0.17488	0.108861
chr19	8446310	8446410	7010777	0	+	0.36	(0.35,0.378]	chr19	696137	8	INTRON	INTRON	HNRNPM	ENSG00000099783.12	ENST00000348943.7:ENST00000597813.5:ENST00000600092.5:ENST00000325495.9:ENST00000600806.5:ENST00000620401.4:ENST00000594907.5:ENST00000596984.5:ENST00000601645.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	25	2	3.80129	4.141565	4.48184	0.0504034	0.0191702	0.17488	0.108861
chr2	216470422	216470521	1015936	0	+	0.373737	(0.35,0.378]	chr2	108148	20	INTRON	INTRON	SMARCAL1	ENSG00000138375.13	ENST00000357276.9:ENST00000358207.9:ENST00000392128.6	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	3.80129	4.141565	4.48184	0.0504034	0.0191702	0.17488	0.108861
chr4	123269758	123269858	2039113	0	+	0.37	(0.35,0.378]	chr4	202390	132	INTRON	INTRON	SPATA5	ENSG00000145375.9	ENST00000675612.1:ENST00000274008.5	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	3.80129	4.141565	4.48184	0.0504034	0.0191702	0.17488	0.108861
chr5	34184251	34184350	2599927	0	-	0.383838	(0.378,0.408]	chr5	247053	10	INTRON	INTRON	GUSBP18	ENSG00000215158.9	ENST00000514048.5:ENST00000507274.1:ENST00000508395.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	2	68	2	3.05389	4.141565	5.22924	0.00172721	6.75567e-4	0.0374701	0.0236067
chr9	71952710	71952810	4140573	0	+	0.36	(0.35,0.378]	chr9	377381	52	INTRON	INTRON	C9orf85	ENSG00000155621.15	ENST00000479413.1:ENST00000377031.7:ENST00000334731.7:ENST00000473252.5:ENST00000486911.2:ENST00000377027.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	25	2	3.80129	4.141565	4.48184	0.0504034	0.0191702	0.17488	0.108861
chr2	239987578	239987678	1345339	0	-	0.24	[0,0.28]	chr2	141057	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	NDUFA10	ENSG00000130414.13	ENST00000419408.5:ENST00000679183.1:ENST00000677057.1:ENST00000676782.1:ENST00000677407.1:ENST00000676929.1:ENST00000678455.1:ENST00000252711.7:ENST00000677692.1:ENST00000476216.6:ENST00000677395.1:ENST00000678188.1:ENST00000677979.1:ENST00000678914.1:ENST00000678562.1:ENST00000678832.1:ENST00000677155.1:ENST00000677764.1:ENST00000677294.1:ENST00000678468.1:ENST00000677324.1:ENST00000678158.1:ENST00000676491.1:ENST00000677114.1:ENST00000404554.5:ENST00000620965.5:ENST00000485344.6:ENST00000679308.1:ENST00000677567.1:ENST00000679158.1:ENST00000443626.5:ENST00000444548.6:ENST00000448880.6:ENST00000677490.1:ENST00000307300.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	62	2	2.69187	4.141545	5.59122	0.0221271	0.00247649	0.123903	0.0446195
chr11	78528158	78528256	5001344	0	-	0.428571	(0.408,0.44]	chr11	472553	9	EXON_MRNA	EXON_MRNA:INTRON	NARS2	ENSG00000137513.11	ENST00000695341.1:ENST00000281038.10:ENST00000695343.1:ENST00000695342.1:ENST00000695344.1:ENST00000529771.2:ENST00000695345.1:ENST00000695115.1:ENST00000695348.1:ENST00000695114.1:ENST00000695346.1:ENST00000695347.1:ENST00000695349.1:ENST00000695116.1:ENST00000695352.1:ENST00000695353.1:ENST00000695351.1:ENST00000695350.1:ENST00000695354.1:ENST00000695355.1:ENST00000528850.5:ENST00000695357.1:ENST00000695366.1:ENST00000695356.1:ENST00000695358.1:ENST00000695359.1:ENST00000695360.1:ENST00000695361.1:ENST00000695362.1:ENST00000525345.6:ENST00000529880.1:ENST00000695364.1:ENST00000695365.1:ENST00000695117.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	82	2	2.08376	4.14151	6.19926	0.0129886	1.98542e-5	0.0991656	0.00360253
chr13	50059227	50059327	5594361	0	-	0.33	(0.32,0.35]	chr13	534699	92	INTRON	INTRON	DLEU2	ENSG00000231607.14	ENST00000621282.4:ENST00000688690.1:ENST00000668305.1:ENST00000425586.5:ENST00000686946.1:ENST00000458725.7:ENST00000692504.1:ENST00000443587.6:ENST00000686700.1:ENST00000691340.1:ENST00000433070.7:ENST00000659339.1:ENST00000662092.1:ENST00000666359.2:ENST00000449579.2:ENST00000421758.6:ENST00000690259.1	lncRNA	lncRNA	lncRNA	lncRNA	1	58	2	2.9451	4.141275	5.33745	0.011051	6.1485e-4	0.0873897	0.0223951
chr1	96729280	96729380	168016	0	+	0.35	(0.32,0.35]	chr1	18215	53	INTRON	INTRON	PTBP2	ENSG00000117569.19	ENST00000482253.5:ENST00000675735.1:ENST00000609116.5:ENST00000674951.1:ENST00000675080.1:ENST00000426398.3:ENST00000460706.5:ENST00000370197.5:ENST00000370198.5:ENST00000476419.5:ENST00000676292.1:ENST00000676096.1:ENST00000675365.1:ENST00000674579.1:ENST00000675401.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	25	2	3.91486	4.141204999999999	4.36755	0.0450361	0.0300552	0.163255	0.129138
chr12	14446091	14446190	5083536	0	+	0.333333	(0.32,0.35]	chr12	480450	75	INTRON	INTRON	ATF7IP	ENSG00000171681.13	ENST00000539659.5:ENST00000537653.5:ENST00000261168.9:ENST00000538511.5:ENST00000543189.5:ENST00000536444.5:ENST00000544627.5:ENST00000541654.1:ENST00000540793.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	25	2	3.91486	4.141204999999999	4.36755	0.0450361	0.0300552	0.163255	0.129138
chr15	84641798	84641898	6088262	0	+	0.33	(0.32,0.35]	chr15	579431	24	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	SCAND2P	ENSG00000176700.21	ENST00000348993.9:ENST00000649495.1:ENST00000541103.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	25	2	3.91486	4.141204999999999	4.36755	0.0450361	0.0300552	0.163255	0.129138
chr16	31896722	31896822	6342037	0	+	0.34	(0.32,0.35]	chr16	608570	61	INTRON	INTRON	ZNF267	ENSG00000185947.15	ENST00000300870.15:ENST00000394846.7:ENST00000566541.5:ENST00000561814.1:ENST00000562971.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	25	2	3.91486	4.141204999999999	4.36755	0.0450361	0.0300552	0.163255	0.129138
chr18	26316295	26316394	6885397	0	+	0.323232	(0.32,0.35]	chr18	682490	5	INTRON	INTRON	TAF4B	ENSG00000141384.13	ENST00000269142.10:ENST00000578121.5:ENST00000418698.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	25	2	3.91486	4.141204999999999	4.36755	0.0450361	0.0300552	0.163255	0.129138
chr19	43489118	43489217	7186618	0	-	0.333333	(0.32,0.35]	chr19	727270	16	INTRON	INTRON	PHLDB3	ENSG00000176531.11	ENST00000595498.5:ENST00000292140.10:ENST00000600660.1:ENST00000596141.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	25	2	3.91486	4.141204999999999	4.36755	0.0450361	0.0300552	0.163255	0.129138
chr2	36562997	36563097	1092452	0	-	0.35	(0.32,0.35]	chr2	117077	16	INTRON	INTRON	FEZ2	ENSG00000171055.15	ENST00000414288.5:ENST00000379245.8:ENST00000405912.8:ENST00000413938.5:ENST00000441005.5:ENST00000305852.11:ENST00000451623.5:ENST00000487282.5:ENST00000464964.1:ENST00000357996.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	25	2	3.91486	4.141204999999999	4.36755	0.0450361	0.0300552	0.163255	0.129138
chr2	97157014	97157113	831292	0	+	0.343434	(0.32,0.35]	chr2	93008	19	INTRON	INTRON	ANKRD36	ENSG00000135976.21	ENST00000420699.9:ENST00000652721.1:ENST00000461153.7	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	3.91486	4.141204999999999	4.36755	0.0450361	0.0300552	0.163255	0.129138
chr5	81251588	81251688	2662419	0	-	0.33	(0.32,0.35]	chr5	252321	4	INTRON	INTRON	CKMT2-AS1	ENSG00000247572.9	ENST00000663674.1:ENST00000503483.6:ENST00000511495.1:ENST00000512287.1:ENST00000502041.3:ENST00000690798.1:ENST00000670957.1:ENST00000660242.1:ENST00000500148.6:ENST00000669977.1:ENST00000656836.1:ENST00000501927.2:ENST00000505295.1	lncRNA	lncRNA	lncRNA	lncRNA	0	25	2	3.91486	4.141204999999999	4.36755	0.0450361	0.0300552	0.163255	0.129138
chr6	35630835	35630934	3086936	0	-	0.333333	(0.32,0.35]	chr6	288775	102	INTRON	INTRON	FKBP5	ENSG00000096060.15	ENST00000536438.5:ENST00000539068.5:ENST00000357266.9:ENST00000542713.1	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	3.91486	4.141204999999999	4.36755	0.0450361	0.0300552	0.163255	0.129138
chr6	97266101	97266200	3164598	0	-	0.333333	(0.32,0.35]	chr6	295128	28	EXON_MRNA	EXON_MRNA:INTRON	MMS22L	ENSG00000146263.12	ENST00000683635.1:ENST00000275053.8:ENST00000369251.6:ENST00000509383.5:ENST00000510018.5:ENST00000508976.5:ENST00000511335.5:ENST00000506256.5:ENST00000484170.2:ENST00000508820.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	25	2	3.91486	4.141204999999999	4.36755	0.0450361	0.0300552	0.163255	0.129138
chr6	143153284	143153384	2976110	0	+	0.35	(0.32,0.35]	chr6	279143	159	INTRON	INTRON	AIG1	ENSG00000146416.19	ENST00000367601.8:ENST00000447498.5:ENST00000646199.1:ENST00000357847.9:ENST00000629020.2:ENST00000275235.8:ENST00000494282.6:ENST00000458219.1	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	3.91486	4.141204999999999	4.36755	0.0450361	0.0300552	0.163255	0.129138
chr6	170662812	170662912	3038081	0	+	0.35	(0.32,0.35]	chr6	283181	242	INTRON	INTRON	ENSG00000230423	ENSG00000230423.3	ENST00000656791.1:ENST00000426839.2	lncRNA	lncRNA	lncRNA	lncRNA	0	25	2	3.91486	4.141204999999999	4.36755	0.0450361	0.0300552	0.163255	0.129138
chr7	10589964	10590064	3482679	0	-	0.33	(0.32,0.35]	chr7	325772	280	INTRON	INTRON	MGC4859	ENSG00000283117.1	ENST00000634803.1	lncRNA	lncRNA	lncRNA	lncRNA	0	25	2	3.91486	4.141204999999999	4.36755	0.0450361	0.0300552	0.163255	0.129138
chr9	63988568	63988667	4262703	0	-	0.343434	(0.32,0.35]	chr9	392254	19	INTRON	INTRON	ENSG00000204790	ENSG00000204790.9	ENST00000485382.3	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	0	25	2	3.91486	4.141204999999999	4.36755	0.0450361	0.0300552	0.163255	0.129138
chr14	101870247	101870347	5819598	0	+	0.35	(0.32,0.35]	chr14	551879	130	INTRON	INTRON	PPP2R5C	ENSG00000078304.20	ENST00000694906.1:ENST00000422945.6:ENST00000328724.9:ENST00000350249.7:ENST00000557621.5:ENST00000556307.5:ENST00000553730.5:ENST00000334743.9:ENST00000445439.7:ENST00000557095.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	72	2	2.54408	4.1411549999999995	5.73823	0.00659077	4.5635e-4	0.0737338	0.0196892
chr12	112067679	112067779	5415002	0	-	0.31	(0.28,0.32]	chr12	517189	59	INTRON	INTRON	NAA25	ENSG00000111300.10	ENST00000261745.9:ENST00000552527.5:ENST00000549711.5:ENST00000551858.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	91	2	2.28714	4.141115	5.99509	0.00696126	2.74247e-4	0.0754576	0.0151711
chr5	181315436	181315536	2563754	0	+	0.47	(0.44,0.476]	chr5	245359	2	SS3_PROX	SS3_PROX:INTRON	ENSG00000238035	ENSG00000238035.8	ENST00000499986.8	lncRNA	lncRNA	lncRNA	lncRNA	5	108	2	2.0592	4.141065	6.22293	0.00556585	2.91965e-6	0.0648867	0.00109445
chr2	214808411	214808511	1326176	0	-	0.31	(0.28,0.32]	chr2	138639	109	INTRON	INTRON	BARD1	ENSG00000138376.11	ENST00000260947.9:ENST00000617164.5:ENST00000619009.5:ENST00000613374.5:ENST00000613706.5:ENST00000421162.2:ENST00000613192.2:ENST00000620057.4:ENST00000455743.5:ENST00000471787.1:ENST00000479904.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	76	2	2.4721	4.14095	5.8098	0.00906617	5.67703e-4	0.0854289	0.0220072
chr1	16318329	16318429	382278	0	-	0.53	(0.515,0.57]	chr1	44888	25	INTRON	INTRON	FBXO42	ENSG00000037637.11	ENST00000375592.8	protein_coding	protein_coding	protein_coding	protein_coding	1	48	2	2.76354	4.140924999999999	5.51831	0.0147344	6.99834e-5	0.0983813	0.00692586
chr1	705376	705475	357005	0	-	0.393939	(0.378,0.408]	chr1	41103	12	INTRON	INTRON	ENSG00000230021	ENSG00000230021.10	ENST00000419394.2:ENST00000634337.2:ENST00000635509.2:ENST00000648019.1:ENST00000440200.5:ENST00000441245.5	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	0	24	2	3.96471	4.14085	4.31699	0.032421	0.0250408	0.145026	0.12011
chr1	160259687	160259787	571583	0	-	0.39	(0.378,0.408]	chr1	69176	153	INTRON	INTRON	DCAF8	ENSG00000132716.19	ENST00000326837.6:ENST00000368073.7:ENST00000368074.6:ENST00000461888.5:ENST00000475733.5:ENST00000610139.5:ENST00000447377.5:ENST00000495887.1:ENST00000440682.5:ENST00000407642.6:ENST00000419626.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	24	2	3.96471	4.14085	4.31699	0.032421	0.0250408	0.145026	0.12011
chr1	197760576	197760676	616798	0	-	0.4	(0.378,0.408]	chr1	72894	244	INTRON	INTRON	DENND1B	ENSG00000213047.13	ENST00000620048.6:ENST00000294737.11:ENST00000367396.7:ENST00000235453.8:ENST00000422998.1:ENST00000468589.5:ENST00000495550.5:ENST00000477581.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	24	2	3.96471	4.14085	4.31699	0.032421	0.0250408	0.145026	0.12011
chr1	212003846	212003946	632063	0	-	0.4	(0.378,0.408]	chr1	74746	155	INTRON	INTRON	INTS7	ENSG00000143493.13	ENST00000469606.5:ENST00000366994.8:ENST00000366993.7:ENST00000366992.7:ENST00000440600.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	24	2	3.96471	4.14085	4.31699	0.032421	0.0250408	0.145026	0.12011
chr1	243436152	243436252	346688	0	+	0.38	(0.378,0.408]	chr1	40299	92	INTRON	INTRON	SDCCAG8	ENSG00000054282.16	ENST00000366541.8:ENST00000435549.1:ENST00000463042.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	24	2	3.96471	4.14085	4.31699	0.032421	0.0250408	0.145026	0.12011
chr14	65058982	65059082	5753283	0	+	0.39	(0.378,0.408]	chr14	546486	39	INTRON	INTRON	CHURC1-FNTB:FNTB	ENSG00000125954.13:ENSG00000257365.8	ENST00000552941.6:ENST00000549987.1:ENST00000246166.3:ENST00000554334.5:ENST00000557300.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	24	2	3.96471	4.14085	4.31699	0.032421	0.0250408	0.145026	0.12011
chr14	73083851	73083951	5784338	0	+	0.4	(0.378,0.408]	chr14	547844	3	SS5_PROX	SS5_PROX:INTRON	RBM25	ENSG00000119707.14	ENST00000527432.5:ENST00000531500.5:ENST00000261973.12:ENST00000532683.5:ENST00000525321.5:ENST00000526754.5:ENST00000528081.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	24	2	3.96471	4.14085	4.31699	0.032421	0.0250408	0.145026	0.12011
chr17	51211310	51211409	6797377	0	-	0.40404	(0.378,0.408]	chr17	671094	15	INTRON	INTRON	MBTD1	ENSG00000011258.16	ENST00000586178.6:ENST00000415868.5:ENST00000405860.7:ENST00000591270.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	24	2	3.96471	4.14085	4.31699	0.032421	0.0250408	0.145026	0.12011
chr17	80135903	80136003	6846920	0	-	0.4	(0.378,0.408]	chr17	677663	5	EXON_MRNA	EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	EIF4A3	ENSG00000141543.12	ENST00000649764.2:ENST00000575978.1:ENST00000576573.1:ENST00000570625.5:ENST00000647795.1:ENST00000576547.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	24	2	3.96471	4.14085	4.31699	0.032421	0.0250408	0.145026	0.12011
chr18	21769549	21769649	6880021	0	+	0.38	(0.378,0.408]	chr18	681880	4	INTRON	INTRON	MIB1	ENSG00000101752.13	ENST00000578646.5:ENST00000261537.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	24	2	3.96471	4.14085	4.31699	0.032421	0.0250408	0.145026	0.12011
chr19	23655281	23655377	7163637	0	-	0.385417	(0.378,0.408]	chr19	724021	7	EXON_MRNA	EXON_MRNA:INTRON	ZNF675	ENSG00000197372.10	ENST00000601935.5:ENST00000600313.5:ENST00000596211.5:ENST00000359788.9:ENST00000600299.1:ENST00000599535.1:ENST00000597074.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	24	2	3.96471	4.14085	4.31699	0.032421	0.0250408	0.145026	0.12011
chr19	32435358	32435456	7049061	0	+	0.408163	(0.378,0.408]	chr19	702824	22	INTRON	INTRON	DPY19L3	ENSG00000178904.19	ENST00000392250.7:ENST00000586987.5:ENST00000342179.9:ENST00000586427.1	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	3.96471	4.14085	4.31699	0.032421	0.0250408	0.145026	0.12011
chr2	101747028	101747127	836552	0	+	0.40404	(0.378,0.408]	chr2	93900	481	INTRON	INTRON	MAP4K4	ENSG00000071054.17	ENST00000427603.5:ENST00000324219.9:ENST00000350878.9:ENST00000425019.6:ENST00000625522.3:ENST00000413150.6:ENST00000634702.1:ENST00000456652.5:ENST00000347699.8:ENST00000417294.5	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	3.96471	4.14085	4.31699	0.032421	0.0250408	0.145026	0.12011
chr2	159259943	159260043	1249230	0	-	0.39	(0.378,0.408]	chr2	132473	1	SS3_PROX	SS3_PROX:INTRON	WDSUB1	ENSG00000196151.11	ENST00000359774.9:ENST00000358147.8:ENST00000409990.7:ENST00000392796.7:ENST00000409124.1	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	3.96471	4.14085	4.31699	0.032421	0.0250408	0.145026	0.12011
chr3	107579036	107579135	1470308	0	+	0.393939	(0.378,0.408]	chr3	154137	523	INTRON	INTRON	BBX	ENSG00000114439.19	ENST00000415149.6:ENST00000402543.5:ENST00000325805.13:ENST00000485939.5:ENST00000427402.5:ENST00000416476.6:ENST00000454540.5:ENST00000449335.5:ENST00000431630.5:ENST00000458458.5:ENST00000456817.5:ENST00000456419.5:ENST00000402163.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	24	2	3.96471	4.14085	4.31699	0.032421	0.0250408	0.145026	0.12011
chr4	72334894	72334994	2156393	0	-	0.38	(0.378,0.408]	chr4	212518	114	INTRON	INTRON	ADAMTS3	ENSG00000156140.10	ENST00000286657.10:ENST00000622135.1	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	3.96471	4.14085	4.31699	0.032421	0.0250408	0.145026	0.12011
chr5	40778185	40778285	2610967	0	-	0.38	(0.378,0.408]	chr5	248267	2	INTRON	INTRON	PRKAA1	ENSG00000132356.12	ENST00000397128.7:ENST00000354209.7:ENST00000506652.5:ENST00000509874.5:ENST00000296800.4:ENST00000511248.1:ENST00000397006.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	24	2	3.96471	4.14085	4.31699	0.032421	0.0250408	0.145026	0.12011
chr5	79663295	79663395	2399251	0	+	0.4	(0.378,0.408]	chr5	231745	59	INTRON	INTRON	TENT2	ENSG00000164329.14	ENST00000423041.6:ENST00000504233.5:ENST00000453514.6:ENST00000428308.6:ENST00000296783.7:ENST00000504982.1:ENST00000513735.5:ENST00000515298.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	24	2	3.96471	4.14085	4.31699	0.032421	0.0250408	0.145026	0.12011
chr9	123220783	123220883	4340002	0	-	0.4	(0.378,0.408]	chr9	398957	70	INTRON	INTRON	STRBP	ENSG00000165209.19	ENST00000348403.10:ENST00000360998.3:ENST00000407982.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	24	2	3.96471	4.14085	4.31699	0.032421	0.0250408	0.145026	0.12011
chr6	136286940	136287039	3231099	0	-	0.515152	(0.476,0.515]	chr6	300408	39	INTRON	INTRON	BCLAF1	ENSG00000029363.17	ENST00000640069.1:ENST00000531224.6:ENST00000353331.8:ENST00000527536.5:ENST00000527613.5:ENST00000530767.5:ENST00000527759.5:ENST00000534269.5:ENST00000532384.5:ENST00000530429.5:ENST00000628517.2:ENST00000529826.5:ENST00000528229.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	67	2	2.43242	4.14081	5.8492	0.0091895	8.94204e-5	0.0855292	0.00844245
chr1	22057798	22057898	42252	0	+	0.57	(0.515,0.57]	chr1	5072	16	INTRON	INTRON	ENSG00000289694:CDC42	ENSG00000289694.1:ENSG00000070831.18	ENST00000695855.1:ENST00000695856.1:ENST00000344548.8:ENST00000400259.5:ENST00000667384.2:ENST00000411827.2:ENST00000695858.1:ENST00000695857.1:ENST00000315554.14:ENST00000695859.1:ENST00000498236.1:ENST00000656825.1:ENST00000651171.1:ENST00000652582.1:ENST00000695860.1:ENST00000695796.1:ENST00000695797.1:ENST00000662562.2:ENST00000695798.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	63	2	2.53845	4.140805	5.74316	0.00632226	2.06122e-5	0.0687526	0.00352433
chr3	73015641	73015721	1452144	0	+	0.5125	(0.476,0.515]	chr3	152958	3	SS3_PROX	SS3_PROX:INTRON	PPP4R2	ENSG00000163605.15	ENST00000482242.5:ENST00000356692.10:ENST00000470976.1:ENST00000488810.5:ENST00000495566.1:ENST00000476505.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	49	2	3.2463	4.14048	5.03466	0.00262374	0.00252065	0.0470772	0.0446195
chr1	58687044	58687144	467701	0	-	0.43	(0.408,0.44]	chr1	56472	14	INTRON	INTRON	MYSM1	ENSG00000162601.11	ENST00000655340.1:ENST00000493821.6:ENST00000472487.6:ENST00000665648.1:ENST00000659812.1:ENST00000659108.1:ENST00000401044.7:ENST00000660611.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	53	2	2.78122	4.14028	5.49934	0.015812	1.5076e-4	0.101453	0.0106137
chr2	222937254	222937353	1022004	0	+	0.313131	(0.28,0.32]	chr2	109357	22	INTRON	INTRON	ACSL3	ENSG00000123983.15	ENST00000392066.7:ENST00000407441.5:ENST00000680251.1:ENST00000679541.1:ENST00000681906.1:ENST00000679545.1:ENST00000679932.1:ENST00000680100.1:ENST00000680475.1:ENST00000680525.1:ENST00000680420.1:ENST00000681326.1:ENST00000681292.1:ENST00000680395.1:ENST00000680736.1:ENST00000680147.1:ENST00000357430.8:ENST00000681009.1:ENST00000679514.1:ENST00000681697.1:ENST00000680921.1:ENST00000681383.1:ENST00000679558.1:ENST00000680684.1:ENST00000680424.1:ENST00000495541.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	56	2	3.1268	4.14019	5.15358	0.0052282	0.00508956	0.0646039	0.0633615
chr12	116244897	116244997	5425223	0	-	0.39	(0.378,0.408]	chr12	518291	68	INTRON	INTRON	MED13L	ENSG00000123066.9	ENST00000281928.9:ENST00000650226.1:ENST00000548743.2:ENST00000551197.2:ENST00000650375.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	90	2	1.90812	4.1401449999999995	6.37217	0.0264295	1.40499e-6	0.122506	7.04076e-4
chr10	73730933	73731026	4453664	0	+	0.290323	(0.28,0.32]	chr10	411038	5	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GLUD1P3	ENSG00000250959.3	ENST00000507952.1:ENST00000690102.1:ENST00000693003.1:ENST00000688348.1:ENST00000686626.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	1	56	2	3.02632	4.1401	5.25388	0.0071944	0.00385849	0.0756118	0.0542786
chr12	91487721	91487821	5384093	0	-	0.32	(0.28,0.32]	chr12	513479	880	INTRON	INTRON	ENSG00000289605	ENSG00000289605.1	ENST00000685093.1	lncRNA	lncRNA	lncRNA	lncRNA	1	56	2	3.02632	4.1401	5.25388	0.0071944	0.00385849	0.0756118	0.0542786
chr1	50926579	50926679	451919	0	-	0.28	[0,0.28]	chr1	54267	682	INTRON	INTRON	FAF1	ENSG00000185104.21	ENST00000396153.7:ENST00000487898.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	26	2	4.07901	4.140035	4.20106	0.0695895	0.0494049	0.184298	0.174117
chr1	211372897	211372994	306768	0	+	0.278351	[0,0.28]	chr1	35380	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TRAF5	ENSG00000082512.15	ENST00000336184.6:ENST00000261464.10:ENST00000473385.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	26	2	4.07901	4.140035	4.20106	0.0695895	0.0494049	0.184298	0.174117
chr1	245839903	245840003	674021	0	-	0.27	[0,0.28]	chr1	79669	251	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000366517.5:ENST00000366516.5:ENST00000490107.6:ENST00000470510.5:ENST00000483072.5:ENST00000493441.5:ENST00000488153.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	26	2	4.07901	4.140035	4.20106	0.0695895	0.0494049	0.184298	0.174117
chr10	21848854	21848954	4577125	0	-	0.24	[0,0.28]	chr10	421900	424	INTRON	INTRON	DNAJC1	ENSG00000136770.11	ENST00000376980.8:ENST00000483085.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	26	2	4.07901	4.140035	4.20106	0.0695895	0.0494049	0.184298	0.174117
chr10	35563632	35563731	4426789	0	+	0.181818	[0,0.28]	chr10	407958	101	INTRON	INTRON	CCNY	ENSG00000108100.18	ENST00000374706.5:ENST00000374704.8:ENST00000265375.13:ENST00000339497.7:ENST00000465416.5:ENST00000497692.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	26	2	4.07901	4.140035	4.20106	0.0695895	0.0494049	0.184298	0.174117
chr11	94438133	94438233	5017996	0	-	0.26	[0,0.28]	chr11	473344	5	INTRON	INTRON	MRE11	ENSG00000020922.13	ENST00000323929.8:ENST00000407439.7:ENST00000323977.7:ENST00000393241.8	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.07901	4.140035	4.20106	0.0695895	0.0494049	0.184298	0.174117
chr15	25356590	25356690	6120995	0	-	0.18	[0,0.28]	chr15	582858	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	UBE3A	ENSG00000114062.22	ENST00000648336.2:ENST00000438097.6:ENST00000635914.1:ENST00000638155.1:ENST00000637886.1:ENST00000638011.1:ENST00000649550.1:ENST00000650110.1:ENST00000630424.2:ENST00000566215.5:ENST00000428984.6:ENST00000604860.3:ENST00000675177.1:ENST00000675593.1:ENST00000625778.3:ENST00000631247.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	26	2	4.07901	4.140035	4.20106	0.0695895	0.0494049	0.184298	0.174117
chr18	26053443	26053542	6959349	0	-	0.242424	[0,0.28]	chr18	688443	2	INTRON	INTRON	SS18	ENSG00000141380.14	ENST00000415083.7:ENST00000542420.6:ENST00000579640.5:ENST00000269138.9:ENST00000269137.11:ENST00000585121.5:ENST00000539244.6:ENST00000585241.5:ENST00000578954.5:ENST00000579061.5:ENST00000577636.5:ENST00000584083.5:ENST00000578700.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	26	2	4.07901	4.140035	4.20106	0.0695895	0.0494049	0.184298	0.174117
chr18	26388744	26388844	6886127	0	+	0.26	[0,0.28]	chr18	682514	306	INTRON	INTRON	TAF4B	ENSG00000141384.13	ENST00000269142.10:ENST00000578121.5:ENST00000418698.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	26	2	4.07901	4.140035	4.20106	0.0695895	0.0494049	0.184298	0.174117
chr2	64015144	64015244	1139971	0	-	0.22	[0,0.28]	chr2	122046	308	INTRON	INTRON	VPS54	ENSG00000143952.20	ENST00000409558.8:ENST00000272322.9	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.07901	4.140035	4.20106	0.0695895	0.0494049	0.184298	0.174117
chr2	86173578	86173649	1170946	0	-	0.211268	[0,0.28]	chr2	124984	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	IMMT	ENSG00000132305.22	ENST00000449247.6:ENST00000254636.9:ENST00000410111.8:ENST00000442664.6:ENST00000419070.6:ENST00000409051.6:ENST00000474969.5:ENST00000409258.2:ENST00000486633.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	26	2	4.07901	4.140035	4.20106	0.0695895	0.0494049	0.184298	0.174117
chr2	148051247	148051347	887052	0	+	0.28	[0,0.28]	chr2	98619	65	INTRON	INTRON	MBD5	ENSG00000204406.14	ENST00000407073.5:ENST00000488372.5:ENST00000496158.5:ENST00000642680.2:ENST00000638130.1:ENST00000637308.1:ENST00000473478.5:ENST00000635796.1:ENST00000637997.1:ENST00000470063.5:ENST00000638043.2:ENST00000638090.1:ENST00000637445.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	26	2	4.07901	4.140035	4.20106	0.0695895	0.0494049	0.184298	0.174117
chr21	34976051	34976151	7448149	0	-	0.26	[0,0.28]	chr21	759873	827	INTRON	INTRON	RUNX1	ENSG00000159216.19	ENST00000300305.7:ENST00000675419.1:ENST00000437180.5:ENST00000482318.5:ENST00000455571.5:ENST00000475045.6:ENST00000416754.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	26	2	4.07901	4.140035	4.20106	0.0695895	0.0494049	0.184298	0.174117
chr22	16785407	16785507	7546253	0	-	0.26	[0,0.28]	chr22	771315	6	INTRON	INTRON	XKR3	ENSG00000172967.8	ENST00000331428.5:ENST00000684488.1	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.07901	4.140035	4.20106	0.0695895	0.0494049	0.184298	0.174117
chr22	19804486	19804584	7555119	0	-	0.204082	[0,0.28]	chr22	772419	19	INTRON	INTRON	GNB1L	ENSG00000185838.14	ENST00000329517.11:ENST00000403325.5:ENST00000405009.5:ENST00000460402.5:ENST00000481086.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	26	2	4.07901	4.140035	4.20106	0.0695895	0.0494049	0.184298	0.174117
chr3	48933902	48934002	1421605	0	+	0.28	[0,0.28]	chr3	149480	57	INTRON	INTRON	ARIH2	ENSG00000177479.20	ENST00000478224.5:ENST00000430423.5:ENST00000452882.5:ENST00000498314.5:ENST00000474618.5:ENST00000449376.5:ENST00000490095.5:ENST00000356401.9:ENST00000495761.5:ENST00000483333.5:ENST00000482427.5:ENST00000488963.5:ENST00000420814.5:ENST00000486316.5:ENST00000474936.6:ENST00000484999.5:ENST00000470296.5:ENST00000463204.5:ENST00000452385.5:ENST00000495507.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	26	2	4.07901	4.140035	4.20106	0.0695895	0.0494049	0.184298	0.174117
chr3	179624722	179624819	1567943	0	+	0.185567	[0,0.28]	chr3	162288	8	UTR3	UTR3:EXON_MRNA	NDUFB5	ENSG00000136521.13	ENST00000493866.5:ENST00000259037.8	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.07901	4.140035	4.20106	0.0695895	0.0494049	0.184298	0.174117
chr3	197613124	197613224	1903884	0	-	0.24	[0,0.28]	chr3	190727	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	SDHAP4	ENSG00000214135.9	ENST00000453454.5:ENST00000685600.1:ENST00000688268.1:ENST00000689716.1:ENST00000689038.1:ENST00000414207.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	26	2	4.07901	4.140035	4.20106	0.0695895	0.0494049	0.184298	0.174117
chr5	72982446	72982546	2388427	0	+	0.24	[0,0.28]	chr5	230520	135	INTRON	INTRON	FCHO2	ENSG00000157107.14	ENST00000430046.7:ENST00000507345.6:ENST00000512348.5:ENST00000287761.7	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.07901	4.140035	4.20106	0.0695895	0.0494049	0.184298	0.174117
chr5	123407933	123408033	2710695	0	-	0.22	[0,0.28]	chr5	255026	38	INTRON	INTRON	CEP120	ENSG00000168944.17	ENST00000306467.10:ENST00000306481.11:ENST00000328236.10:ENST00000674667.1:ENST00000674620.1:ENST00000675814.1:ENST00000675330.1:ENST00000675104.1:ENST00000675686.1:ENST00000675442.1:ENST00000508442.7:ENST00000674684.1:ENST00000508138.5:ENST00000513565.6:ENST00000675444.1:ENST00000503049.2:ENST00000675409.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	26	2	4.07901	4.140035	4.20106	0.0695895	0.0494049	0.184298	0.174117
chr7	64830239	64830339	3320708	0	+	0.26	[0,0.28]	chr7	308722	142	INTRON	INTRON	ZNF138	ENSG00000197008.10	ENST00000359735.7:ENST00000440155.6:ENST00000494380.5:ENST00000307355.12:ENST00000437743.1:ENST00000440598.2:ENST00000430838.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	26	2	4.07901	4.140035	4.20106	0.0695895	0.0494049	0.184298	0.174117
chr7	105220523	105220623	3602215	0	-	0.24	[0,0.28]	chr7	336137	136	INTRON	INTRON	SRPK2	ENSG00000135250.17	ENST00000393651.8:ENST00000357311.7:ENST00000489828.5:ENST00000482897.5:ENST00000460391.5:ENST00000462282.5:ENST00000465112.5:ENST00000482862.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	26	2	4.07901	4.140035	4.20106	0.0695895	0.0494049	0.184298	0.174117
chr7	111087437	111087537	3619356	0	-	0.24	[0,0.28]	chr7	337093	1235	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	26	2	4.07901	4.140035	4.20106	0.0695895	0.0494049	0.184298	0.174117
chr7	111332282	111332382	3621805	0	-	0.27	[0,0.28]	chr7	337093	3684	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	26	2	4.07901	4.140035	4.20106	0.0695895	0.0494049	0.184298	0.174117
chr8	42154009	42154106	3742742	0	+	0.237113	[0,0.28]	chr8	347999	12	UTR5	UTR5:EXON_MRNA:SS3_PROX:INTRON	AP3M2	ENSG00000070718.12	ENST00000174653.3:ENST00000518421.5:ENST00000517865.5:ENST00000520685.1:ENST00000396926.8:ENST00000521280.5:ENST00000530375.5:ENST00000522288.5:ENST00000521235.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	26	2	4.07901	4.140035	4.20106	0.0695895	0.0494049	0.184298	0.174117
chr8	98609972	98610072	3997996	0	-	0.22	[0,0.28]	chr8	366060	78	INTRON	INTRON	STK3	ENSG00000104375.17	ENST00000617590.1:ENST00000419617.7:ENST00000523601.5:ENST00000518582.5:ENST00000518165.5:ENST00000521649.5:ENST00000424861.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	26	2	4.07901	4.140035	4.20106	0.0695895	0.0494049	0.184298	0.174117
chr2	10366177	10366277	692264	0	+	0.36	(0.35,0.378]	chr2	81139	114	INTRON	INTRON	HPCAL1	ENSG00000115756.13	ENST00000423674.5:ENST00000307845.8:ENST00000381765.7:ENST00000419810.6:ENST00000622018.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	56	2	2.72497	4.139984999999999	5.555	0.0198266	1.71389e-4	0.109608	0.0113605
chr22	23272092	23272189	7484131	0	+	0.43299	(0.408,0.44]	chr22	763581	1	INTRON	INTRON	BCR	ENSG00000186716.21	ENST00000359540.7:ENST00000305877.13:ENST00000427791.1	protein_coding	protein_coding	protein_coding	protein_coding	1	53	2	3.15414	4.13991	5.12568	0.00469847	7.90919e-4	0.0600108	0.0258324
chr3	182951530	182951630	1879640	0	-	0.53	(0.515,0.57]	chr3	187800	35	INTRON	INTRON	DCUN1D1	ENSG00000043093.15	ENST00000292782.9:ENST00000632685.1:ENST00000460412.6:ENST00000469954.5:ENST00000492563.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	45	2	3.05839	4.1399	5.22141	0.00485936	6.44141e-4	0.0640618	0.0231685
chr2	69844496	69844596	804902	0	+	0.24	[0,0.28]	chr2	89816	3	SS5_PROX	SS5_PROX:INTRON	GMCL1	ENSG00000087338.5	ENST00000282570.4:ENST00000471404.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	61	2	3.2223	4.13989	5.05748	0.0113653	0.00422777	0.0886611	0.0595466
chr5	131571327	131571427	2718531	0	-	0.26	[0,0.28]	chr5	255608	89	INTRON	INTRON	RAPGEF6	ENSG00000158987.22	ENST00000509018.6:ENST00000507093.5:ENST00000296859.10:ENST00000627212.2:ENST00000308008.10:ENST00000515170.5:ENST00000510071.5:ENST00000503398.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	61	2	3.2223	4.13989	5.05748	0.0113653	0.00422777	0.0886611	0.0595466
chr7	141753180	141753279	3440252	0	+	0.434343	(0.408,0.44]	chr7	320701	24	INTRON	INTRON	SSBP1	ENSG00000106028.11	ENST00000465582.5	protein_coding	protein_coding	protein_coding	protein_coding	1	49	2	3.25948	4.13988	5.02028	0.00303216	0.00246454	0.0493883	0.0459102
chr10	70411930	70412029	4447153	0	+	0.424242	(0.408,0.44]	chr10	410345	70	INTRON	INTRON	EIF4EBP2	ENSG00000148730.7	ENST00000373218.5	protein_coding	protein_coding	protein_coding	protein_coding	1	49	2	3.08738	4.1397	5.19202	0.00478231	0.0016671	0.0636201	0.0369207
chr17	44181522	44181622	6778974	0	-	0.43	(0.408,0.44]	chr17	668270	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ASB16-AS1	ENSG00000267080.7	ENST00000588785.6:ENST00000585457.6:ENST00000591166.1:ENST00000667684.1:ENST00000669052.1:ENST00000656516.1:ENST00000667107.1:ENST00000592897.1	lncRNA	lncRNA	lncRNA	lncRNA	1	49	2	3.08738	4.1397	5.19202	0.00478231	0.0016671	0.0636201	0.0369207
chr18	80045175	80045273	6938030	0	+	0.459184	(0.44,0.476]	chr18	686174	5	INTRON	INTRON	RBFA	ENSG00000101546.13	ENST00000306735.10:ENST00000262197.7:ENST00000593019.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	71	2	2.78046	4.13962	5.49878	0.0028389	1.52058e-4	0.0473151	0.0106137
chr5	28870031	28870131	2330450	0	+	0.25	[0,0.28]	chr5	225135	595	INTRON	INTRON	LINC02109	ENSG00000259786.7	ENST00000658190.1	lncRNA	lncRNA	lncRNA	lncRNA	1	61	2	2.80396	4.13955	5.47514	0.0161429	0.00354561	0.109464	0.0529186
chrX	71540969	71541069	7680026	0	+	0.45	(0.44,0.476]	chrX	786397	25	INTRON	INTRON	OGT	ENSG00000147162.14	ENST00000373719.8:ENST00000488174.5:ENST00000373701.7:ENST00000498566.3:ENST00000444774.3:ENST00000455587.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	241	2	3.44898	4.139545	4.83011	1.11138e-6	4.86014e-7	6.58685e-4	3.74666e-4
chr10	100360134	100360233	4507792	0	+	0.464646	(0.44,0.476]	chr10	415072	30	INTRON	INTRON	SCD	ENSG00000099194.6	ENST00000370355.3	protein_coding	protein_coding	protein_coding	protein_coding	3	87	2	2.64557	4.139475	5.63338	0.00158432	7.86121e-5	0.0363089	0.00738014
chr18	46846625	46846706	6966018	0	-	0.469136	(0.44,0.476]	chr18	689489	3	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	PIAS2	ENSG00000078043.16	ENST00000585916.6:ENST00000398654.7:ENST00000324794.11:ENST00000545673.5:ENST00000592212.5:ENST00000590127.5:ENST00000592011.5:ENST00000589819.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	53	2	3.75608	4.139390000000001	4.5227	0.0128818	2.6487e-4	0.0926667	0.0144071
chr1	21644867	21644967	395524	0	-	0.37	(0.35,0.378]	chr1	47153	181	INTRON	INTRON	RAP1GAP	ENSG00000076864.21	ENST00000374765.9:ENST00000471600.6:ENST00000542643.6:ENST00000611549.4:ENST00000495204.5:ENST00000374757.7:ENST00000317967.11:ENST00000447293.5:ENST00000482984.5:ENST00000464457.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	24	2	4.08816	4.13919	4.19022	0.046021	0.0209891	0.149888	0.122348
chr1	23527762	23527861	400524	0	-	0.363636	(0.35,0.378]	chr1	48081	29	INTRON	INTRON	E2F2	ENSG00000007968.7	ENST00000361729.3	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	4.08816	4.13919	4.19022	0.046021	0.0209891	0.149888	0.122348
chr1	169821678	169821759	252349	0	+	0.37037	(0.35,0.378]	chr1	29900	1	CDS	CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA	C1orf112	ENSG00000000460.17	ENST00000498289.5:ENST00000359326.9:ENST00000459772.5:ENST00000466580.6:ENST00000286031.10:ENST00000413811.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	24	2	4.08816	4.13919	4.19022	0.046021	0.0209891	0.149888	0.122348
chr1	206397149	206397248	299808	0	+	0.353535	(0.35,0.378]	chr1	34392	31	INTRON	INTRON	SRGAP2	ENSG00000266028.8	ENST00000573034.8:ENST00000419187.6:ENST00000605610.5:ENST00000624873.3	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	4.08816	4.13919	4.19022	0.046021	0.0209891	0.149888	0.122348
chr1	245835005	245835105	673972	0	-	0.37	(0.35,0.378]	chr1	79669	202	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000366517.5:ENST00000366516.5:ENST00000490107.6:ENST00000470510.5:ENST00000483072.5:ENST00000493441.5:ENST00000488153.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	24	2	4.08816	4.13919	4.19022	0.046021	0.0209891	0.149888	0.122348
chr12	9423755	9423845	5264901	0	-	0.355556	(0.35,0.378]	chr12	501848	8	INTRON	INTRON	DDX12P	ENSG00000214826.5	ENST00000432996.2	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	0	24	2	4.08816	4.13919	4.19022	0.046021	0.0209891	0.149888	0.122348
chr12	123405474	123405574	5242796	0	+	0.37	(0.35,0.378]	chr12	498216	4	SS5_PROX	SS5_PROX:INTRON	KMT5A	ENSG00000183955.14	ENST00000402868.8:ENST00000437519.5:ENST00000437502.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	24	2	4.08816	4.13919	4.19022	0.046021	0.0209891	0.149888	0.122348
chr14	20322382	20322482	5833045	0	-	0.36	(0.35,0.378]	chr14	553952	16	INTRON	INTRON	CCNB1IP1	ENSG00000100814.18	ENST00000353689.8:ENST00000437553.6:ENST00000398160.6:ENST00000358932.9:ENST00000398169.7:ENST00000398163.6:ENST00000556854.5:ENST00000557665.5:ENST00000556563.5:ENST00000553291.5:ENST00000553516.5:ENST00000555348.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	24	2	4.08816	4.13919	4.19022	0.046021	0.0209891	0.149888	0.122348
chr15	75391457	75391551	6223453	0	-	0.37234	(0.35,0.378]	chr15	594430	13	INTRON	INTRON	SIN3A	ENSG00000169375.16	ENST00000394947.8:ENST00000360439.8:ENST00000394949.8	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	4.08816	4.13919	4.19022	0.046021	0.0209891	0.149888	0.122348
chr16	89327743	89327843	6541951	0	-	0.36	(0.35,0.378]	chr16	634203	75	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000647238.1:ENST00000563291.1:ENST00000566858.5:ENST00000644045.1:ENST00000643147.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	24	2	4.08816	4.13919	4.19022	0.046021	0.0209891	0.149888	0.122348
chr19	48247270	48247367	7198515	0	-	0.360825	(0.35,0.378]	chr19	729695	5	INTRON	INTRON	CARD8	ENSG00000105483.18	ENST00000517510.5:ENST00000651546.1:ENST00000518622.5:ENST00000447740.6:ENST00000518979.5:ENST00000519940.6:ENST00000520753.5:ENST00000520153.5:ENST00000522773.5:ENST00000522051.5:ENST00000519646.5:ENST00000520015.5:ENST00000521613.5:ENST00000519302.6:ENST00000522068.5:ENST00000518596.5:ENST00000517778.5:ENST00000521092.5:ENST00000522889.5:ENST00000522431.5:ENST00000519332.5:ENST00000520007.5:ENST00000521437.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	24	2	4.08816	4.13919	4.19022	0.046021	0.0209891	0.149888	0.122348
chr19	55000259	55000359	7100209	0	+	0.37	(0.35,0.378]	chr19	712206	1	SS3_PROX	SS3_PROX:INTRON	NLRP2	ENSG00000022556.16	ENST00000543010.5:ENST00000540597.5:ENST00000391721.8:ENST00000339757.11:ENST00000537859.5:ENST00000448584.7:ENST00000427260.6:ENST00000263437.10:ENST00000542755.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	24	2	4.08816	4.13919	4.19022	0.046021	0.0209891	0.149888	0.122348
chr19	57794218	57794317	7105461	0	+	0.373737	(0.35,0.378]	chr19	713178	6	INTRON	INTRON	ZNF586	ENSG00000083828.16	ENST00000598885.5:ENST00000598183.1:ENST00000599802.1	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	4.08816	4.13919	4.19022	0.046021	0.0209891	0.149888	0.122348
chr2	20322205	20322304	1076494	0	-	0.363636	(0.35,0.378]	chr2	115021	32	INTRON	INTRON	PUM2	ENSG00000055917.16	ENST00000338086.9:ENST00000361078.7:ENST00000442400.5:ENST00000420234.5:ENST00000429419.6:ENST00000432105.5:ENST00000446940.5:ENST00000424110.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	24	2	4.08816	4.13919	4.19022	0.046021	0.0209891	0.149888	0.122348
chr2	27652691	27652790	1087896	0	-	0.353535	(0.35,0.378]	chr2	116706	20	UTR3	UTR3:EXON_MRNA	SUPT7L	ENSG00000119760.16	ENST00000337768.10:ENST00000404798.6	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	4.08816	4.13919	4.19022	0.046021	0.0209891	0.149888	0.122348
chr20	37087892	37087991	7339489	0	-	0.373737	(0.35,0.378]	chr20	747929	55	INTRON	INTRON	RBL1	ENSG00000080839.12	ENST00000373664.8:ENST00000344359.7:ENST00000527999.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	24	2	4.08816	4.13919	4.19022	0.046021	0.0209891	0.149888	0.122348
chr21	37235705	37235803	7462059	0	-	0.377551	(0.35,0.378]	chr21	760235	19	INTRON	INTRON	VPS26C	ENSG00000157538.14	ENST00000399000.7:ENST00000309117.11:ENST00000399001.5:ENST00000476950.5:ENST00000488368.5:ENST00000398998.1:ENST00000480452.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	24	2	4.08816	4.13919	4.19022	0.046021	0.0209891	0.149888	0.122348
chr3	48709801	48709898	1689629	0	-	0.371134	(0.35,0.378]	chr3	172860	12	INTRON	INTRON	IP6K2	ENSG00000068745.15	ENST00000328631.10:ENST00000449563.5:ENST00000413654.5:ENST00000443853.5:ENST00000437427.5:ENST00000412850.5:ENST00000454335.5:ENST00000340879.8:ENST00000432678.6:ENST00000433104.2:ENST00000416707.1:ENST00000431721.6:ENST00000449610.5:ENST00000413298.5:ENST00000450045.5:ENST00000446860.5:ENST00000455545.5:ENST00000412795.5:ENST00000417896.1:ENST00000443964.1:ENST00000436134.5:ENST00000440424.5:ENST00000434860.1:ENST00000424035.1:ENST00000476645.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	24	2	4.08816	4.13919	4.19022	0.046021	0.0209891	0.149888	0.122348
chr5	72135521	72135621	2385863	0	+	0.37	(0.35,0.378]	chr5	230228	187	INTRON	INTRON	MAP1B	ENSG00000131711.15	ENST00000512974.5:ENST00000296755.12:ENST00000513526.6:ENST00000511641.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	24	2	4.08816	4.13919	4.19022	0.046021	0.0209891	0.149888	0.122348
chr6	36504983	36505083	3088948	0	-	0.37	(0.35,0.378]	chr6	288936	46	INTRON	INTRON	STK38	ENSG00000112079.9	ENST00000229812.8	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	4.08816	4.13919	4.19022	0.046021	0.0209891	0.149888	0.122348
chr7	151365340	151365440	3449317	0	+	0.37	(0.35,0.378]	chr7	322372	42	INTRON	INTRON	NUB1	ENSG00000013374.17	ENST00000413040.7:ENST00000568733.6:ENST00000470229.6:ENST00000480907.5:ENST00000497987.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	24	2	4.08816	4.13919	4.19022	0.046021	0.0209891	0.149888	0.122348
chr8	86440525	86440625	3790252	0	+	0.37	(0.35,0.378]	chr8	351411	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	WWP1	ENSG00000123124.14	ENST00000517970.6:ENST00000265428.4:ENST00000518683.5:ENST00000520453.5:ENST00000521997.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	24	2	4.08816	4.13919	4.19022	0.046021	0.0209891	0.149888	0.122348
chr9	122273766	122273865	4194198	0	+	0.363636	(0.35,0.378]	chr9	382675	23	INTRON	INTRON	MRRF	ENSG00000148187.18	ENST00000297908.7:ENST00000344641.8:ENST00000441707.5:ENST00000373723.9:ENST00000373729.5:ENST00000373728.6:ENST00000373727.5:ENST00000470366.5:ENST00000373724.1:ENST00000467864.5:ENST00000489572.5:ENST00000394315.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	24	2	4.08816	4.13919	4.19022	0.046021	0.0209891	0.149888	0.122348
chr9	132333321	132333420	4366946	0	-	0.353535	(0.35,0.378]	chr9	401476	15	INTRON	INTRON	SETX	ENSG00000107290.14	ENST00000224140.6	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	4.08816	4.13919	4.19022	0.046021	0.0209891	0.149888	0.122348
chr9	133271562	133271662	4369995	0	-	0.46	(0.44,0.476]	chr9	402068	90	INTRON	INTRON	ABO	ENSG00000175164.16	ENST00000679909.1:ENST00000453660.4:ENST00000647353.1:ENST00000611156.4:ENST00000538324.2:ENST00000651471.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	437	2	3.84488	4.139155000000001	4.43343	2.04712e-8	7.85946e-9	5.21814e-5	2.37807e-5
chr19	15263119	15263219	7146699	0	-	0.56	(0.515,0.57]	chr19	721913	3	SS5_PROX	SS5_PROX:INTRON	BRD4	ENSG00000141867.19	ENST00000679869.1:ENST00000263377.6:ENST00000371835.8:ENST00000360016.9:ENST00000594841.5:ENST00000602230.1:ENST00000678800.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	47	2	2.96814	4.138675	5.30921	0.00756432	1.98811e-4	0.0749063	0.0122787
chr21	44945827	44945926	7417518	0	+	0.565657	(0.515,0.57]	chr21	756221	16	INTRON	INTRON	SLX9	ENSG00000160256.13	ENST00000397826.7:ENST00000458015.1:ENST00000291634.11	protein_coding	protein_coding	protein_coding	protein_coding	1	47	2	2.96814	4.138675	5.30921	0.00756432	1.98811e-4	0.0749063	0.0122787
chr16	89476056	89476156	6543457	0	-	0.29	(0.28,0.32]	chr16	634281	444	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	91	2	2.53475	4.138545000000001	5.7423400000000004	0.00257029	7.31742e-4	0.0466761	0.0248722
chr8	111015132	111015232	4027349	0	-	0.5	(0.476,0.515]	chr8	367855	1	SS3_PROX	SS3_PROX:INTRON	LINC01608	ENSG00000253877.6	ENST00000670392.1:ENST00000658597.1:ENST00000662310.1:ENST00000671489.1:ENST00000668858.1:ENST00000669698.1:ENST00000665803.1:ENST00000658028.1:ENST00000664704.1:ENST00000661954.1:ENST00000661561.1:ENST00000658081.1:ENST00000667145.1:ENST00000658119.1:ENST00000524283.5:ENST00000669893.1:ENST00000660015.1:ENST00000668956.1:ENST00000657323.1:ENST00000663408.1:ENST00000653924.1:ENST00000659834.1:ENST00000658508.1:ENST00000669744.1:ENST00000658733.1:ENST00000657532.1:ENST00000665011.1:ENST00000523557.2:ENST00000669997.1:ENST00000663666.1:ENST00000660667.1	lncRNA	lncRNA	lncRNA	lncRNA	1	51	2	3.58243	4.137815	4.6932	0.00753088	6.18479e-4	0.074841	0.0223951
chr1	245880867	245880967	674432	0	-	0.39	(0.378,0.408]	chr1	79681	166	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000366517.5:ENST00000366516.5:ENST00000490107.6:ENST00000470510.5:ENST00000493441.5:ENST00000488153.5:ENST00000492487.5:ENST00000391836.3:ENST00000464398.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	54	2	3.10274	4.1377749999999995	5.17281	0.00586642	7.27294e-4	0.0668095	0.0245647
chr9	124396263	124396362	4346463	0	-	0.292929	(0.28,0.32]	chr9	399165	113	INTRON	INTRON	PSMB7	ENSG00000136930.13	ENST00000259457.8:ENST00000498485.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	56	2	3.17453	4.1376100000000005	5.10069	0.00610574	0.00429297	0.0676501	0.0599065
chr12	124783199	124783296	5445759	0	-	0.412371	(0.408,0.44]	chr12	521219	5	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	SCARB1	ENSG00000073060.17	ENST00000339570.9:ENST00000261693.11:ENST00000679605.1:ENST00000681686.1:ENST00000680926.1:ENST00000680556.1:ENST00000680982.1:ENST00000680596.1:ENST00000681555.1:ENST00000681788.1:ENST00000415380.6:ENST00000681117.1:ENST00000681499.1:ENST00000545305.1:ENST00000538291.5:ENST00000546215.5:ENST00000535005.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	91	2	2.58565	4.137455	5.68926	6.66092e-4	2.2853e-4	0.0233804	0.0138641
chr3	9998722	9998822	1362089	0	+	0.39	(0.378,0.408]	chr3	143402	45	INTRON	INTRON	EMC3-AS1	ENSG00000180385.9	ENST00000692142.1:ENST00000366264.6:ENST00000693066.1:ENST00000326237.3:ENST00000440568.1:ENST00000424904.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	3	150	2	3.64249	4.137355	4.63222	2.75279e-5	4.77e-6	0.00414532	0.00161149
chr16	18076400	18076500	6453397	0	-	0.41	(0.408,0.44]	chr16	621960	726	INTRON	INTRON	ENSG00000259929:ENSG00000260242	ENSG00000259929.5:ENSG00000260242.1	ENST00000567304.1:ENST00000563866.1	lncRNA	lncRNA	lncRNA	lncRNA	1	51	2	3.59564	4.13729	4.67894	0.0087648	5.73354e-4	0.0788605	0.0217398
chr1	150335741	150335836	221495	0	+	0.6	(0.57,1]	chr1	24996	1	INTRON	INTRON	PRPF3	ENSG00000117360.13	ENST00000324862.7:ENST00000467329.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	51	2	2.81549	4.137065	5.45864	3.90081e-4	1.90577e-5	0.0177751	0.00354138
chr1	47227171	47227269	445396	0	-	0.5	(0.476,0.515]	chr1	53958	9	INTRON	INTRON	TAL1	ENSG00000162367.12	ENST00000371884.6:ENST00000691006.1:ENST00000294339.3	protein_coding	protein_coding	protein_coding	protein_coding	1	52	2	2.82673	4.13663	5.44653	0.0134403	2.03754e-4	0.0946278	0.0124395
chr13	45339895	45339993	5585181	0	-	0.387755	(0.378,0.408]	chr13	533746	4	EXON_MRNA	EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TPT1	ENSG00000133112.17	ENST00000616577.4:ENST00000530705.6:ENST00000379056.5:ENST00000529421.5:ENST00000490277.1:ENST00000533567.5:ENST00000379060.8:ENST00000379055.5:ENST00000309246.9:ENST00000527226.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	50	2	3.33026	4.13638	4.9425	0.00452675	0.00189824	0.0595107	0.0402736
chr1	15722083	15722180	34396	0	+	0.381443	(0.378,0.408]	chr1	4176	3	INTRON	INTRON	PLEKHM2	ENSG00000116786.13	ENST00000375799.8:ENST00000375793.2:ENST00000642363.1	protein_coding	protein_coding	protein_coding	protein_coding	3	149	2	3.54187	4.135935	4.73	9.09909e-5	8.98085e-7	0.00848955	5.37848e-4
chr1	6618427	6618524	5464	0	+	0.494845	(0.476,0.515]	chr1	1068	12	INTRON	INTRON	PHF13	ENSG00000116273.6	ENST00000377648.5:ENST00000495385.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	24	2	3.83018	4.13573	4.44128	0.0423385	0.0151924	0.161744	0.0994339
chr12	100140495	100140594	5396799	0	-	0.484848	(0.476,0.515]	chr12	514636	114	INTRON	INTRON	UHRF1BP1L	ENSG00000111647.13	ENST00000279907.12:ENST00000356828.7:ENST00000547428.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	24	2	3.83018	4.13573	4.44128	0.0423385	0.0151924	0.161744	0.0994339
chr12	110318697	110318797	5226477	0	+	0.5	(0.476,0.515]	chr12	495250	216	INTRON	INTRON	ATP2A2	ENSG00000174437.18	ENST00000308664.10:ENST00000539276.7:ENST00000377685.9:ENST00000548169.2:ENST00000550248.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	24	2	3.83018	4.13573	4.44128	0.0423385	0.0151924	0.161744	0.0994339
chr12	120521614	120521713	5434299	0	-	0.484848	(0.476,0.515]	chr12	519551	45	INTRON	INTRON	COQ5	ENSG00000110871.15	ENST00000288532.11:ENST00000445328.6:ENST00000552443.5:ENST00000547943.5:ENST00000551769.1	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	3.83018	4.13573	4.44128	0.0423385	0.0151924	0.161744	0.0994339
chr14	50323544	50323644	5716142	0	+	0.49	(0.476,0.515]	chr14	542840	2	SS3_PROX	SS3_PROX:INTRON	DMAC2L	ENSG00000125375.18	ENST00000311459.12:ENST00000554438.6:ENST00000672419.1:ENST00000672910.1:ENST00000557421.7:ENST00000555939.6:ENST00000245448.11:ENST00000554204.7:ENST00000358473.2:ENST00000554951.6:ENST00000553774.2:ENST00000556962.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	24	2	3.83018	4.13573	4.44128	0.0423385	0.0151924	0.161744	0.0994339
chr14	50941392	50941491	5893219	0	-	0.484848	(0.476,0.515]	chr14	559634	32	INTRON	INTRON	PYGL	ENSG00000100504.17	ENST00000532462.5:ENST00000216392.8:ENST00000544180.6:ENST00000530336.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	24	2	3.83018	4.13573	4.44128	0.0423385	0.0151924	0.161744	0.0994339
chr15	43770818	43770907	6012306	0	+	0.494382	(0.476,0.515]	chr15	572686	3	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PDIA3	ENSG00000167004.14	ENST00000687794.1:ENST00000686402.1:ENST00000686175.1:ENST00000687211.1:ENST00000685864.1:ENST00000691274.1:ENST00000686314.1:ENST00000300289.10:ENST00000688851.1:ENST00000687167.1:ENST00000688652.1:ENST00000693281.1:ENST00000691893.1:ENST00000684793.1:ENST00000692341.1:ENST00000690274.1:ENST00000690371.1:ENST00000692484.1:ENST00000689152.1:ENST00000687465.1:ENST00000434494.5:ENST00000686227.1:ENST00000497349.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	24	2	3.83018	4.13573	4.44128	0.0423385	0.0151924	0.161744	0.0994339
chr20	17570810	17570910	7242811	0	+	0.51	(0.476,0.515]	chr20	735374	2	INTRON	INTRON	DSTN	ENSG00000125868.16	ENST00000246069.12:ENST00000474024.5:ENST00000449141.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	24	2	3.83018	4.13573	4.44128	0.0423385	0.0151924	0.161744	0.0994339
chr6	43431457	43431549	2870396	0	+	0.5	(0.476,0.515]	chr6	272026	2	INTRON	INTRON	ABCC10	ENSG00000124574.15	ENST00000372515.8:ENST00000372530.9:ENST00000502549.1:ENST00000443426.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	24	2	3.83018	4.13573	4.44128	0.0423385	0.0151924	0.161744	0.0994339
chr7	5601960	5602059	3272511	0	+	0.50505	(0.476,0.515]	chr7	304171	67	INTRON	INTRON	FSCN1	ENSG00000075618.18	ENST00000382361.8:ENST00000444748.5:ENST00000447103.5:ENST00000405801.2	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	3.83018	4.13573	4.44128	0.0423385	0.0151924	0.161744	0.0994339
chr7	7692607	7692707	3276226	0	+	0.49	(0.476,0.515]	chr7	304705	2	INTRON	INTRON	UMAD1	ENSG00000219545.12	ENST00000493246.5:ENST00000682710.1:ENST00000463725.5:ENST00000638342.1:ENST00000636849.1:ENST00000639343.1:ENST00000639110.1:ENST00000482067.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	24	2	3.83018	4.13573	4.44128	0.0423385	0.0151924	0.161744	0.0994339
chr7	139740910	139741010	3658465	0	-	0.5	(0.476,0.515]	chr7	339545	235	INTRON	INTRON	HIPK2	ENSG00000064393.16	ENST00000406875.8:ENST00000428878.6	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	3.83018	4.13573	4.44128	0.0423385	0.0151924	0.161744	0.0994339
chr9	127531147	127531247	4355671	0	-	0.49	(0.476,0.515]	chr9	399842	1	SS5_PROX	SS5_PROX:INTRON	NIBAN2	ENSG00000136830.12	ENST00000373314.7:ENST00000373312.4:ENST00000478917.1:ENST00000468379.1:ENST00000484348.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	24	2	3.83018	4.13573	4.44128	0.0423385	0.0151924	0.161744	0.0994339
chr1	23964736	23964833	402002	0	-	0.319588	(0.28,0.32]	chr1	48271	5	UTR3	UTR3:EXON_MRNA	SRSF10	ENSG00000188529.15	ENST00000492112.3:ENST00000344989.10	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	4.03345	4.13532	4.23719	0.0704058	0.0264147	0.184298	0.133676
chr10	80501245	80501344	4476704	0	+	0.313131	(0.28,0.32]	chr10	412081	116	INTRON	INTRON	TSPAN14	ENSG00000108219.15	ENST00000429989.7:ENST00000481124.5:ENST00000372158.6:ENST00000372157.6:ENST00000469149.1:ENST00000372164.7:ENST00000341863.10:ENST00000372156.5:ENST00000616406.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	25	2	4.03345	4.13532	4.23719	0.0704058	0.0264147	0.184298	0.133676
chr13	32513749	32513848	5572595	0	-	0.282828	(0.28,0.32]	chr13	532549	36	UTR3	UTR3:EXON_MRNA:INTRON	N4BP2L2	ENSG00000244754.9	ENST00000357505.10:ENST00000399396.7:ENST00000504114.5:ENST00000509076.1:ENST00000446957.6:ENST00000674456.1:ENST00000674161.1:ENST00000674422.1:ENST00000674272.1:ENST00000674452.1:ENST00000674384.1:ENST00000505213.5:ENST00000473025.1:ENST00000674219.1:ENST00000267068.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	25	2	4.03345	4.13532	4.23719	0.0704058	0.0264147	0.184298	0.133676
chr15	74505747	74505846	6062019	0	+	0.30303	(0.28,0.32]	chr15	577138	138	INTRON	INTRON	UBL7-DT:ENSG00000261775	ENSG00000247240.9:ENSG00000261775.1	ENST00000670462.1:ENST00000562869.1	lncRNA	lncRNA	lncRNA	lncRNA	0	25	2	4.03345	4.13532	4.23719	0.0704058	0.0264147	0.184298	0.133676
chr15	92949234	92949319	6104200	0	+	0.282353	(0.28,0.32]	chr15	581468	1	SS5_PROX	SS5_PROX:INTRON	CHD2	ENSG00000173575.22	ENST00000626874.2:ENST00000394196.9:ENST00000635856.1:ENST00000625990.3:ENST00000637572.1:ENST00000636881.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	61	2	2.78004	4.13532	5.4906	0.0193244	4.89126e-4	0.108861	0.0199693
chr16	72521005	72521100	6517868	0	-	0.284211	(0.28,0.32]	chr16	631339	1	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	LINC01572	ENSG00000261008.8	ENST00000624829.4:ENST00000561611.2:ENST00000656218.1:ENST00000666555.2:ENST00000664155.1:ENST00000657725.1:ENST00000563770.5:ENST00000668081.1:ENST00000570152.2:ENST00000662171.1:ENST00000691892.1:ENST00000659470.1:ENST00000655530.1	lncRNA	lncRNA	lncRNA	lncRNA	0	25	2	4.03345	4.13532	4.23719	0.0704058	0.0264147	0.184298	0.133676
chr17	63755939	63756039	6811796	0	-	0.31	(0.28,0.32]	chr17	673157	3	SS5_PROX	SS5_PROX:INTRON	CCDC47	ENSG00000108588.15	ENST00000225726.10:ENST00000403162.7:ENST00000582252.1:ENST00000582331.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	25	2	4.03345	4.13532	4.23719	0.0704058	0.0264147	0.184298	0.133676
chr17	67150645	67150745	6824860	0	-	0.3	(0.28,0.32]	chr17	674447	2	SS5_PROX	SS5_PROX:INTRON	HELZ	ENSG00000198265.12	ENST00000358691.10:ENST00000579953.5:ENST00000580168.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	25	2	4.03345	4.13532	4.23719	0.0704058	0.0264147	0.184298	0.133676
chr2	70291900	70291991	1152595	0	-	0.296703	(0.28,0.32]	chr2	123145	2	INTRON	INTRON	SNRPG	ENSG00000143977.14	ENST00000272348.7:ENST00000429728.1:ENST00000482975.6:ENST00000438261.5:ENST00000454893.1:ENST00000413456.6:ENST00000449935.6:ENST00000480370.1:ENST00000488400.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	25	2	4.03345	4.13532	4.23719	0.0704058	0.0264147	0.184298	0.133676
chr20	62941820	62941920	7299554	0	+	0.32	(0.28,0.32]	chr20	742718	2	SS5_PROX	SS5_PROX:INTRON	GID8	ENSG00000101193.8	ENST00000266069.5	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	4.03345	4.13532	4.23719	0.0704058	0.0264147	0.184298	0.133676
chr3	15825900	15826000	1624106	0	-	0.3	(0.28,0.32]	chr3	168034	112	INTRON	INTRON	ANKRD28	ENSG00000206560.12	ENST00000399451.6:ENST00000412318.5:ENST00000439830.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	25	2	4.03345	4.13532	4.23719	0.0704058	0.0264147	0.184298	0.133676
chr3	32711947	32712044	1393382	0	+	0.28866000000000003	(0.28,0.32]	chr3	145868	28	INTRON	INTRON	CNOT10	ENSG00000182973.20	ENST00000331889.10:ENST00000328834.10:ENST00000435630.5:ENST00000494439.5:ENST00000556853.5:ENST00000454516.7:ENST00000485136.5:ENST00000416457.5:ENST00000455381.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	25	2	4.03345	4.13532	4.23719	0.0704058	0.0264147	0.184298	0.133676
chr3	194442452	194442551	1890741	0	-	0.282828	(0.28,0.32]	chr3	189183	6	INTRON	INTRON	ATP13A3	ENSG00000133657.17	ENST00000687055.1:ENST00000645538.1:ENST00000645319.2:ENST00000690810.1:ENST00000645621.1:ENST00000642744.2:ENST00000439040.6:ENST00000690382.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	25	2	4.03345	4.13532	4.23719	0.0704058	0.0264147	0.184298	0.133676
chr4	145139750	145139850	2255067	0	-	0.3	(0.28,0.32]	chr4	220157	4	SS5_PROX	SS5_PROX:INTRON	OTUD4	ENSG00000164164.17	ENST00000455611.6:ENST00000454497.6:ENST00000447906.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	25	2	4.03345	4.13532	4.23719	0.0704058	0.0264147	0.184298	0.133676
chr8	9008931	9009031	3695619	0	+	0.29	(0.28,0.32]	chr8	342908	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	ERI1	ENSG00000104626.15	ENST00000519292.5:ENST00000250263.8:ENST00000520684.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	25	2	4.03345	4.13532	4.23719	0.0704058	0.0264147	0.184298	0.133676
chr8	37739005	37739101	3733954	0	+	0.28125	(0.28,0.32]	chr8	346820	6	INTRON	INTRON	ERLIN2	ENSG00000147475.17	ENST00000519872.1:ENST00000518526.5:ENST00000523887.5:ENST00000519638.3:ENST00000648919.1:ENST00000521993.3:ENST00000518586.5:ENST00000335171.10:ENST00000521644.5:ENST00000523107.5:ENST00000647813.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	25	2	4.03345	4.13532	4.23719	0.0704058	0.0264147	0.184298	0.133676
chr8	105458756	105458856	3838649	0	+	0.29	(0.28,0.32]	chr8	354063	71	INTRON	INTRON	ZFPM2	ENSG00000169946.14	ENST00000407775.7:ENST00000520492.5:ENST00000520027.5:ENST00000524235.5:ENST00000511341.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	25	2	4.03345	4.13532	4.23719	0.0704058	0.0264147	0.184298	0.133676
chr8	123348784	123348884	4042145	0	-	0.29	(0.28,0.32]	chr8	368716	1	SS5_PROX	SS5_PROX:INTRON	ATAD2	ENSG00000156802.13	ENST00000287394.10:ENST00000517666.5:ENST00000521903.5:ENST00000519124.5:ENST00000521496.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	25	2	4.03345	4.13532	4.23719	0.0704058	0.0264147	0.184298	0.133676
chr9	7019422	7019521	4102795	0	+	0.313131	(0.28,0.32]	chr9	373762	31	INTRON	INTRON	KDM4C	ENSG00000107077.19	ENST00000536108.5:ENST00000381306.7:ENST00000381309.8:ENST00000543771.5:ENST00000428870.6:ENST00000420847.2	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	4.03345	4.13532	4.23719	0.0704058	0.0264147	0.184298	0.133676
chr9	77912560	77912660	4270755	0	-	0.32	(0.28,0.32]	chr9	392874	964	INTRON	INTRON	GNAQ	ENSG00000156052.11	ENST00000286548.9:ENST00000411677.1	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	4.03345	4.13532	4.23719	0.0704058	0.0264147	0.184298	0.133676
chr8	25447727	25447825	3926240	0	-	0.255102	[0,0.28]	chr8	359451	11	INTRON	INTRON	KCTD9	ENSG00000104756.16	ENST00000221200.9:ENST00000519665.5:ENST00000523140.5:ENST00000522493.5:ENST00000518067.5:ENST00000518997.5:ENST00000523294.5:ENST00000521458.5:ENST00000524217.1:ENST00000520405.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	63	2	3.44611	4.13522	4.82433	0.0200334	0.00185186	0.109608	0.039946
chr21	9113485	9113585	7426474	0	-	0.3	(0.28,0.32]	chr21	757579	252	INTRON	INTRON	TEKT4P2	ENSG00000188681.12	ENST00000690061.1:ENST00000689141.1:ENST00000688310.1:ENST00000687537.1:ENST00000690096.1:ENST00000687888.1:ENST00000690389.1:ENST00000684989.1:ENST00000416067.6:ENST00000693307.1:ENST00000692383.1:ENST00000685666.1:ENST00000688451.1:ENST00000691190.1:ENST00000685532.1:ENST00000687488.1:ENST00000690713.1:ENST00000691834.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	1	61	2	2.91851	4.1352	5.35189	0.0130672	8.52844e-4	0.093385	0.0264928
chr1	245776404	245776504	673385	0	-	0.29	(0.28,0.32]	chr1	79659	119	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000366517.5:ENST00000366516.5:ENST00000482592.5:ENST00000490107.6:ENST00000470510.5:ENST00000483072.5:ENST00000490322.1:ENST00000493441.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	25	2	4.12807	4.135105	4.14214	0.0579756	0.0338135	0.167723	0.146709
chr10	91940466	91940566	4488896	0	+	0.3	(0.28,0.32]	chr10	413299	4	SS5_PROX	SS5_PROX:INTRON	BTAF1	ENSG00000095564.15	ENST00000265990.12	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	4.12807	4.135105	4.14214	0.0579756	0.0338135	0.167723	0.146709
chr11	72837231	72837328	4979814	0	-	0.319588	(0.28,0.32]	chr11	470632	6	UTR3	UTR3:EXON_MRNA	FCHSD2	ENSG00000137478.15	ENST00000409418.9:ENST00000311172.11:ENST00000409314.5	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	4.12807	4.135105	4.14214	0.0579756	0.0338135	0.167723	0.146709
chr11	75989010	75989110	4833931	0	+	0.32	(0.28,0.32]	chr11	450969	51	INTRON	INTRON	UVRAG	ENSG00000198382.9	ENST00000356136.8:ENST00000528420.5:ENST00000533454.5:ENST00000531818.5:ENST00000532130.1	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	4.12807	4.135105	4.14214	0.0579756	0.0338135	0.167723	0.146709
chr12	111872974	111873074	5229044	0	+	0.29	(0.28,0.32]	chr12	495670	14	INTRON	INTRON	MAPKAPK5	ENSG00000089022.14	ENST00000550735.7:ENST00000553053.5:ENST00000551404.6:ENST00000549875.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	25	2	4.12807	4.135105	4.14214	0.0579756	0.0338135	0.167723	0.146709
chr13	50259059	50259159	5492757	0	+	0.3	(0.28,0.32]	chr13	526063	103	INTRON	INTRON	DLEU1	ENSG00000176124.15	ENST00000467721.5:ENST00000468522.5:ENST00000490577.5:ENST00000491341.5:ENST00000491615.5:ENST00000463474.7:ENST00000468168.5:ENST00000476738.5:ENST00000461527.7:ENST00000486895.5:ENST00000485007.5:ENST00000475913.5:ENST00000484529.5:ENST00000473075.3:ENST00000483444.5	lncRNA	lncRNA	lncRNA	lncRNA	0	25	2	4.12807	4.135105	4.14214	0.0579756	0.0338135	0.167723	0.146709
chr17	49667227	49667326	6793388	0	-	0.292929	(0.28,0.32]	chr17	670309	198	INTRON	INTRON	SPOP	ENSG00000121067.19	ENST00000393328.6:ENST00000504102.6:ENST00000347630.6:ENST00000665825.1:ENST00000514121.6:ENST00000659760.1:ENST00000509079.6:ENST00000671445.1:ENST00000513080.6:ENST00000505581.5:ENST00000506399.5:ENST00000507970.5:ENST00000515508.6:ENST00000504212.5:ENST00000508805.5:ENST00000451526.6:ENST00000502385.1:ENST00000509765.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	25	2	4.12807	4.135105	4.14214	0.0579756	0.0338135	0.167723	0.146709
chr17	78225042	78225141	6682283	0	+	0.313131	(0.28,0.32]	chr17	652767	15	UTR3	UTR3:EXON_MRNA	BIRC5	ENSG00000089685.15	ENST00000301633.8:ENST00000350051.8:ENST00000374948.6	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	4.12807	4.135105	4.14214	0.0579756	0.0338135	0.167723	0.146709
chr19	11737622	11737721	7137999	0	-	0.292929	(0.28,0.32]	chr19	720076	70	INTRON	INTRON	ZNF823	ENSG00000197933.13	ENST00000341191.11:ENST00000431998.1:ENST00000586121.1:ENST00000440527.1	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	4.12807	4.135105	4.14214	0.0579756	0.0338135	0.167723	0.146709
chr2	8983406	8983505	1063366	0	-	0.30303	(0.28,0.32]	chr2	113387	86	INTRON	INTRON	MBOAT2	ENSG00000143797.12	ENST00000305997.8:ENST00000486484.5:ENST00000477073.5:ENST00000462696.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	25	2	4.12807	4.135105	4.14214	0.0579756	0.0338135	0.167723	0.146709
chr2	55598315	55598415	1124927	0	-	0.29	(0.28,0.32]	chr2	120667	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	PPP4R3B	ENSG00000275052.5	ENST00000616407.2:ENST00000611717.4:ENST00000616288.4	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	4.12807	4.135105	4.14214	0.0579756	0.0338135	0.167723	0.146709
chr20	49680390	49680490	7353293	0	-	0.29	(0.28,0.32]	chr20	749846	233	INTRON	INTRON	B4GALT5	ENSG00000158470.5	ENST00000371711.4	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	4.12807	4.135105	4.14214	0.0579756	0.0338135	0.167723	0.146709
chr3	185705541	185705641	1885153	0	-	0.32	(0.28,0.32]	chr3	188573	68	INTRON	INTRON	IGF2BP2	ENSG00000073792.16	ENST00000382199.7:ENST00000346192.7:ENST00000457616.6:ENST00000421047.3:ENST00000461957.5:ENST00000493302.5:ENST00000466476.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	25	2	4.12807	4.135105	4.14214	0.0579756	0.0338135	0.167723	0.146709
chr4	118614527	118614626	2024973	0	+	0.30303	(0.28,0.32]	chr4	201331	52	INTRON	INTRON	ENSG00000260404	ENSG00000260404.4	ENST00000567913.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	25	2	4.12807	4.135105	4.14214	0.0579756	0.0338135	0.167723	0.146709
chr4	123140473	123140573	2037819	0	+	0.31	(0.28,0.32]	chr4	202384	383	INTRON	INTRON	SPATA5	ENSG00000145375.9	ENST00000675612.1:ENST00000274008.5	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	4.12807	4.135105	4.14214	0.0579756	0.0338135	0.167723	0.146709
chr5	27371055	27371155	2328572	0	+	0.31	(0.28,0.32]	chr5	225084	896	INTRON	INTRON	PURPL	ENSG00000250337.8	ENST00000651409.1:ENST00000650981.1	lncRNA	lncRNA	lncRNA	lncRNA	0	25	2	4.12807	4.135105	4.14214	0.0579756	0.0338135	0.167723	0.146709
chr5	123406436	123406535	2710680	0	-	0.313131	(0.28,0.32]	chr5	255026	23	INTRON	INTRON	CEP120	ENSG00000168944.17	ENST00000306467.10:ENST00000306481.11:ENST00000328236.10:ENST00000674667.1:ENST00000674620.1:ENST00000675814.1:ENST00000675330.1:ENST00000675104.1:ENST00000675686.1:ENST00000675442.1:ENST00000508442.7:ENST00000674684.1:ENST00000508138.5:ENST00000513565.6:ENST00000675444.1:ENST00000503049.2:ENST00000675409.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	25	2	4.12807	4.135105	4.14214	0.0579756	0.0338135	0.167723	0.146709
chr6	158815786	158815886	3253302	0	-	0.31	(0.28,0.32]	chr6	302380	261	INTRON	INTRON	EZR	ENSG00000092820.19	ENST00000337147.11:ENST00000367075.4:ENST00000476189.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	25	2	4.12807	4.135105	4.14214	0.0579756	0.0338135	0.167723	0.146709
chr7	27620472	27620572	3510515	0	-	0.31	(0.28,0.32]	chr7	327330	770	INTRON	INTRON	HIBADH	ENSG00000106049.9	ENST00000265395.7:ENST00000428288.2:ENST00000425715.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	25	2	4.12807	4.135105	4.14214	0.0579756	0.0338135	0.167723	0.146709
chr7	110848199	110848299	3616959	0	-	0.3	(0.28,0.32]	chr7	337078	1225	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000487733.5:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	25	2	4.12807	4.135105	4.14214	0.0579756	0.0338135	0.167723	0.146709
chr8	99430632	99430729	3815464	0	+	0.319588	(0.28,0.32]	chr8	353217	6	INTRON	INTRON	VPS13B	ENSG00000132549.20	ENST00000496144.5:ENST00000683334.1:ENST00000357162.7:ENST00000358544.7:ENST00000683619.1:ENST00000682153.1:ENST00000682358.1:ENST00000682145.1:ENST00000355155.6:ENST00000682234.1:ENST00000683486.1:ENST00000521037.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	25	2	4.12807	4.135105	4.14214	0.0579756	0.0338135	0.167723	0.146709
chr9	98844365	98844443	4174026	0	+	0.282051	(0.28,0.32]	chr9	380395	3	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	GALNT12	ENSG00000119514.7	ENST00000375011.4:ENST00000615204.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	25	2	4.12807	4.135105	4.14214	0.0579756	0.0338135	0.167723	0.146709
chrX	139928117	139928217	7905856	0	-	0.31	(0.28,0.32]	chrX	804457	960	INTRON	INTRON	ATP11C	ENSG00000101974.15	ENST00000370557.5:ENST00000682941.1:ENST00000485626.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	25	2	4.12807	4.135105	4.14214	0.0579756	0.0338135	0.167723	0.146709
chr17	17235440	17235537	6736059	0	-	0.43299	(0.408,0.44]	chr17	660935	22	INTRON	INTRON	FLCN	ENSG00000154803.13	ENST00000285071.9:ENST00000389169.9:ENST00000417064.1:ENST00000389171.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	49	2	3.02513	4.13507	5.24501	0.0059965	0.00137378	0.0700606	0.0336718
chr9	98001175	98001275	4173219	0	+	0.43	(0.408,0.44]	chr9	380281	21	INTRON	INTRON	ANP32B	ENSG00000136938.9	ENST00000339399.5:ENST00000473205.1:ENST00000486769.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	49	2	3.02513	4.13507	5.24501	0.0059965	0.00137378	0.0700606	0.0336718
chr13	32523661	32523761	5572701	0	-	0.36	(0.35,0.378]	chr13	532565	15	EXON_MRNA	EXON_MRNA:INTRON	N4BP2L2	ENSG00000244754.9	ENST00000357505.10:ENST00000399396.7:ENST00000504114.5:ENST00000446957.6:ENST00000674456.1:ENST00000674161.1:ENST00000674422.1:ENST00000674272.1:ENST00000674452.1:ENST00000674384.1:ENST00000505213.5:ENST00000674219.1:ENST00000267068.5:ENST00000674349.1:ENST00000674428.1:ENST00000503814.2:ENST00000674465.1:ENST00000674421.1:ENST00000674180.1:ENST00000674297.1:ENST00000674293.1:ENST00000674480.1:ENST00000674377.1:ENST00000674437.1:ENST00000674327.1:ENST00000674399.1:ENST00000674196.1:ENST00000674163.1:ENST00000511143.5:ENST00000674484.1:ENST00000475731.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	52	2	3.41139	4.135045	4.8587	0.00695662	0.00143263	0.0718189	0.0347139
chr3	183673306	183673406	1580175	0	+	0.36	(0.35,0.378]	chr3	163010	4	INTRON	INTRON	KLHL24	ENSG00000114796.16	ENST00000242810.11:ENST00000454652.6	protein_coding	protein_coding	protein_coding	protein_coding	1	52	2	3.41139	4.135045	4.8587	0.00695662	0.00143263	0.0718189	0.0347139
chr3	197117067	197117164	1901673	0	-	0.350515	(0.35,0.378]	chr3	190565	6	INTRON	INTRON	DLG1	ENSG00000075711.21	ENST00000667157.1:ENST00000346964.6:ENST00000656428.1:ENST00000663148.1:ENST00000655488.1:ENST00000357674.9:ENST00000671185.1:ENST00000658701.1:ENST00000667104.1:ENST00000661336.1:ENST00000669565.1:ENST00000670455.1:ENST00000656087.1:ENST00000670366.1:ENST00000653583.1:ENST00000653795.1:ENST00000671246.1:ENST00000661453.1:ENST00000665728.1:ENST00000664564.1:ENST00000653331.1:ENST00000660432.1:ENST00000660898.1:ENST00000657381.1:ENST00000659221.1:ENST00000654737.1:ENST00000669332.1:ENST00000659716.1:ENST00000660553.1:ENST00000664991.1:ENST00000419354.5:ENST00000661440.1:ENST00000667971.1:ENST00000670935.1:ENST00000668578.1:ENST00000666007.1:ENST00000661229.1:ENST00000660237.1:ENST00000657098.1:ENST00000661013.1:ENST00000436682.6:ENST00000452595.5:ENST00000662727.1:ENST00000422288.6:ENST00000448528.6:ENST00000443183.5:ENST00000656944.1:ENST00000392382.6:ENST00000450955.5:ENST00000658155.1:ENST00000669714.1:ENST00000654733.1:ENST00000469073.2:ENST00000419227.5:ENST00000392381.7:ENST00000471733.5:ENST00000419553.6:ENST00000447466.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	52	2	3.41139	4.135045	4.8587	0.00695662	0.00143263	0.0718189	0.0347139
chr1	200579060	200579159	617307	0	-	0.353535	(0.35,0.378]	chr1	72980	30	INTRON	INTRON	KIF14	ENSG00000118193.12	ENST00000614960.4:ENST00000367350.5	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	3.97032	4.134965	4.29961	0.0578667	0.0158483	0.167723	0.109464
chr1	223835860	223835960	643278	0	-	0.37	(0.35,0.378]	chr1	75964	99	INTRON	INTRON	TP53BP2	ENSG00000143514.17	ENST00000343537.12:ENST00000391878.6:ENST00000465119.1:ENST00000472180.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	24	2	3.97032	4.134965	4.29961	0.0578667	0.0158483	0.167723	0.109464
chr10	22572612	22572711	4579072	0	-	0.363636	(0.35,0.378]	chr10	421992	32	INTRON	INTRON	PIP4K2A	ENSG00000150867.14	ENST00000376573.9:ENST00000323883.11:ENST00000545335.5:ENST00000604912.1:ENST00000422321.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	24	2	3.97032	4.134965	4.29961	0.0578667	0.0158483	0.167723	0.109464
chr10	102303958	102304057	4513234	0	+	0.353535	(0.35,0.378]	chr10	415720	95	INTRON	INTRON	GBF1	ENSG00000107862.7	ENST00000676513.1:ENST00000676939.1:ENST00000677439.1:ENST00000677240.1:ENST00000677618.1:ENST00000679155.1:ENST00000679280.1:ENST00000678036.1:ENST00000678476.1:ENST00000678504.1:ENST00000677247.1:ENST00000677655.1:ENST00000678351.1:ENST00000679238.1:ENST00000677487.1:ENST00000677506.1:ENST00000678666.1:ENST00000676560.1:ENST00000673650.1:ENST00000674034.1:ENST00000369983.5:ENST00000679003.1:ENST00000678486.1:ENST00000676682.1:ENST00000676807.1:ENST00000676993.1:ENST00000678575.1:ENST00000677522.1:ENST00000678293.1:ENST00000679087.1:ENST00000677683.1:ENST00000676861.1:ENST00000677491.1:ENST00000677461.1:ENST00000677871.1:ENST00000677431.1:ENST00000677852.1:ENST00000678401.1:ENST00000677956.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	24	2	3.97032	4.134965	4.29961	0.0578667	0.0158483	0.167723	0.109464
chr11	34468895	34468992	4768967	0	+	0.371134	(0.35,0.378]	chr11	441274	1	INTRON	INTRON	CAT	ENSG00000121691.7	ENST00000241052.5	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	3.97032	4.134965	4.29961	0.0578667	0.0158483	0.167723	0.109464
chr11	61141011	61141110	4955529	0	-	0.353535	(0.35,0.378]	chr11	465539	18	INTRON	INTRON	VPS37C	ENSG00000167987.11	ENST00000301765.10:ENST00000538036.1:ENST00000536000.1:ENST00000535818.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	24	2	3.97032	4.134965	4.29961	0.0578667	0.0158483	0.167723	0.109464
chr12	119778336	119778436	5431267	0	-	0.37	(0.35,0.378]	chr12	518948	11	INTRON	INTRON	CIT	ENSG00000122966.17	ENST00000392521.7:ENST00000261833.11:ENST00000677438.1:ENST00000677993.1:ENST00000678087.1:ENST00000678652.1:ENST00000676849.1:ENST00000678677.1:ENST00000545913.6:ENST00000679249.1:ENST00000679120.1:ENST00000677812.1:ENST00000677849.1:ENST00000678494.1:ENST00000612548.4:ENST00000392520.2:ENST00000537607.5:ENST00000676833.1:ENST00000536325.1:ENST00000677927.1:ENST00000676563.1:ENST00000678686.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	24	2	3.97032	4.134965	4.29961	0.0578667	0.0158483	0.167723	0.109464
chr14	81497001	81497098	5937963	0	-	0.350515	(0.35,0.378]	chr14	564314	15	INTRON	INTRON	SEL1L	ENSG00000071537.14	ENST00000336735.9	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	3.97032	4.134965	4.29961	0.0578667	0.0158483	0.167723	0.109464
chr16	48580606	48580706	6485128	0	-	0.36	(0.35,0.378]	chr16	627161	178	INTRON	INTRON	N4BP1	ENSG00000102921.8	ENST00000262384.4:ENST00000564124.5:ENST00000564710.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	24	2	3.97032	4.134965	4.29961	0.0578667	0.0158483	0.167723	0.109464
chr2	111261239	111261339	1209450	0	-	0.36	(0.35,0.378]	chr2	128831	126	INTRON	INTRON	MIR4435-2HG	ENSG00000172965.17	ENST00000645030.2:ENST00000642191.1:ENST00000673798.1:ENST00000645051.2:ENST00000673649.1:ENST00000673962.1:ENST00000674132.1:ENST00000669658.1:ENST00000669917.1:ENST00000661559.1:ENST00000653687.1:ENST00000667670.1:ENST00000609220.2:ENST00000656760.1:ENST00000609902.6:ENST00000666683.1:ENST00000674070.1:ENST00000662335.1:ENST00000664422.1:ENST00000673775.1:ENST00000662889.1:ENST00000665096.1:ENST00000674092.1:ENST00000673958.1:ENST00000673770.1:ENST00000673961.1:ENST00000658936.1:ENST00000662635.1:ENST00000666204.1:ENST00000659458.1:ENST00000664443.1:ENST00000670295.1:ENST00000661655.1:ENST00000666390.1:ENST00000659079.1:ENST00000660442.1:ENST00000664009.1:ENST00000439362.6:ENST00000654473.1:ENST00000664999.1:ENST00000673728.1:ENST00000659791.1:ENST00000666144.1:ENST00000659933.1:ENST00000670715.1:ENST00000656303.1:ENST00000666367.1:ENST00000666652.1:ENST00000669050.1:ENST00000667218.1:ENST00000656067.1:ENST00000653568.1:ENST00000643013.1:ENST00000673866.1:ENST00000673700.1:ENST00000443467.6:ENST00000451884.6:ENST00000669875.1:ENST00000673653.1:ENST00000673988.1:ENST00000661945.1:ENST00000669515.1:ENST00000431385.6:ENST00000655573.1:ENST00000656416.1:ENST00000662384.1	lncRNA	lncRNA	lncRNA	lncRNA	0	24	2	3.97032	4.134965	4.29961	0.0578667	0.0158483	0.167723	0.109464
chr2	131087437	131087536	1229033	0	-	0.373737	(0.35,0.378]	chr2	130994	44	INTRON	INTRON	FAM168B	ENSG00000152102.18	ENST00000389915.4:ENST00000409185.5	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	3.97032	4.134965	4.29961	0.0578667	0.0158483	0.167723	0.109464
chr22	49794987	49795083	7602891	0	-	0.364583	(0.35,0.378]	chr22	778635	3	INTRON	INTRON	BRD1	ENSG00000100425.19	ENST00000404760.6:ENST00000404034.5:ENST00000216267.12:ENST00000438393.5:ENST00000457780.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	24	2	3.97032	4.134965	4.29961	0.0578667	0.0158483	0.167723	0.109464
chr4	94258443	94258542	1998028	0	+	0.363636	(0.35,0.378]	chr4	199451	44	INTRON	INTRON	SMARCAD1	ENSG00000163104.18	ENST00000359052.8:ENST00000457823.6:ENST00000354268.9:ENST00000510105.5:ENST00000394961.6:ENST00000509418.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	24	2	3.97032	4.134965	4.29961	0.0578667	0.0158483	0.167723	0.109464
chr5	132578517	132578617	2486904	0	+	0.37	(0.35,0.378]	chr5	237290	22	INTRON	INTRON	RAD50	ENSG00000113522.14	ENST00000416135.5:ENST00000651541.1:ENST00000533482.5:ENST00000378823.8:ENST00000652016.1:ENST00000651160.1:ENST00000652485.1:ENST00000651723.1:ENST00000423956.5:ENST00000453394.5:ENST00000651658.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	24	2	3.97032	4.134965	4.29961	0.0578667	0.0158483	0.167723	0.109464
chr7	7693406	7693505	3276234	0	+	0.353535	(0.35,0.378]	chr7	304705	10	INTRON	INTRON	UMAD1	ENSG00000219545.12	ENST00000493246.5:ENST00000682710.1:ENST00000463725.5:ENST00000638342.1:ENST00000636849.1:ENST00000639343.1:ENST00000639110.1:ENST00000482067.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	24	2	3.97032	4.134965	4.29961	0.0578667	0.0158483	0.167723	0.109464
chr7	30143381	30143481	3300228	0	+	0.36	(0.35,0.378]	chr7	306448	53	INTRON	INTRON	MTURN	ENSG00000180354.16	ENST00000324453.13:ENST00000409688.1:ENST00000434060.1	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	3.97032	4.134965	4.29961	0.0578667	0.0158483	0.167723	0.109464
chr8	47726400	47726499	3751909	0	+	0.353535	(0.35,0.378]	chr8	348907	124	INTRON	INTRON	SPIDR	ENSG00000164808.17	ENST00000541342.2:ENST00000518074.5:ENST00000297423.9:ENST00000524126.5:ENST00000522117.5:ENST00000521214.5:ENST00000519401.5:ENST00000519141.5:ENST00000517693.5:ENST00000519362.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	24	2	3.97032	4.134965	4.29961	0.0578667	0.0158483	0.167723	0.109464
chr8	94511629	94511729	3993712	0	-	0.37	(0.35,0.378]	chr8	365612	5	CDS	CDS:EXON_MRNA	VIRMA	ENSG00000164944.12	ENST00000297591.10:ENST00000522263.5:ENST00000521080.5:ENST00000421249.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	24	2	3.97032	4.134965	4.29961	0.0578667	0.0158483	0.167723	0.109464
chr9	123517591	123517691	4341883	0	-	0.36	(0.35,0.378]	chr9	399056	557	INTRON	INTRON	DENND1A	ENSG00000119522.17	ENST00000373624.6:ENST00000473039.5:ENST00000394215.7:ENST00000373620.7:ENST00000491650.5:ENST00000497135.5:ENST00000373618.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	24	2	3.97032	4.134965	4.29961	0.0578667	0.0158483	0.167723	0.109464
chr5	77733213	77733313	2646803	0	-	0.45	(0.44,0.476]	chr5	251578	180	INTRON	INTRON	TBCA	ENSG00000171530.15	ENST00000380377.9:ENST00000306388.10:ENST00000520361.5:ENST00000651106.1:ENST00000518338.6:ENST00000522370.1:ENST00000520039.1	protein_coding	protein_coding	protein_coding	protein_coding	1	52	2	2.9195	4.13491	5.35032	0.0102021	3.02713e-4	0.0850389	0.0155054
chr6	34343471	34343571	3084282	0	-	0.46	(0.44,0.476]	chr6	288633	11	INTRON	INTRON	NUDT3:RPS10-NUDT3	ENSG00000272325.2:ENSG00000270800.3	ENST00000607016.2:ENST00000639725.1:ENST00000639877.1:ENST00000605528.2	protein_coding	protein_coding	protein_coding	protein_coding	1	52	2	3.02751	4.13481	5.24211	0.00715968	4.87398e-4	0.0723634	0.0199652
chr9	111479538	111479637	4315246	0	-	0.454545	(0.44,0.476]	chr9	396845	62	INTRON	INTRON	ECPAS	ENSG00000136813.15	ENST00000684092.1:ENST00000338205.9:ENST00000259335.8:ENST00000602447.5:ENST00000602978.1	protein_coding	protein_coding	protein_coding	protein_coding	1	52	2	3.02751	4.13481	5.24211	0.00715968	4.87398e-4	0.0723634	0.0199652
chr16	88661626	88661721	6539314	0	-	0.536842	(0.515,0.57]	chr16	633758	4	INTRON	INTRON	MVD	ENSG00000167508.12	ENST00000301012.8:ENST00000569177.5:ENST00000567064.5:ENST00000568133.5:ENST00000563785.5:ENST00000568709.5:ENST00000563170.5:ENST00000565610.5:ENST00000563463.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	148	2	3.76759	4.134705	4.50182	4.30039e-6	9.76625e-7	0.00151054	5.60831e-4
chr1	113121107	113121205	188597	0	+	0.367347	(0.35,0.378]	chr1	20949	12	INTRON	INTRON	LRIG2	ENSG00000198799.12	ENST00000361127.6:ENST00000492207.5:ENST00000466161.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	24	2	4.07186	4.13448	4.1971	0.0367539	0.0279478	0.138959	0.137011
chr1	222636437	222636536	319539	0	+	0.353535	(0.35,0.378]	chr1	36640	28	INTRON	INTRON	MIA3	ENSG00000154305.18	ENST00000344922.10:ENST00000470521.1:ENST00000354906.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	24	2	4.07186	4.13448	4.1971	0.0367539	0.0279478	0.138959	0.137011
chr1	224295505	224295604	644559	0	-	0.363636	(0.35,0.378]	chr1	76135	7	INTRON	INTRON	NVL	ENSG00000143748.18	ENST00000391875.6:ENST00000469968.5:ENST00000482491.5:ENST00000281701.11:ENST00000469075.5:ENST00000340871.8:ENST00000467882.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	24	2	4.07186	4.13448	4.1971	0.0367539	0.0279478	0.138959	0.137011
chr12	57292767	57292867	5337857	0	-	0.37	(0.35,0.378]	chr12	510646	1	SS3_PROX	SS3_PROX:INTRON	R3HDM2	ENSG00000179912.21	ENST00000393811.6:ENST00000402412.6:ENST00000347140.7:ENST00000358907.6:ENST00000441731.6:ENST00000634871.1:ENST00000429355.6:ENST00000403821.6:ENST00000547262.1:ENST00000547019.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	24	2	4.07186	4.13448	4.1971	0.0367539	0.0279478	0.138959	0.137011
chr15	40698156	40698256	6003205	0	+	0.36	(0.35,0.378]	chr15	570996	19	INTRON	INTRON	RAD51	ENSG00000051180.17	ENST00000527860.5:ENST00000423169.6:ENST00000557850.5:ENST00000267868.8:ENST00000645673.2:ENST00000382643.7:ENST00000525066.5:ENST00000526763.6:ENST00000532743.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	24	2	4.07186	4.13448	4.1971	0.0367539	0.0279478	0.138959	0.137011
chr15	42227476	42227543	6155528	0	-	0.358209	(0.35,0.378]	chr15	585813	2	SS5_PROX	SS5_PROX:INTRON	TMEM87A	ENSG00000103978.16	ENST00000389834.9:ENST00000448392.5:ENST00000564329.1:ENST00000566014.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	24	2	4.07186	4.13448	4.1971	0.0367539	0.0279478	0.138959	0.137011
chr17	57466704	57466804	6634863	0	+	0.37	(0.35,0.378]	chr17	648057	216	INTRON	INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000674961.1:ENST00000582453.5:ENST00000675656.1:ENST00000322684.7:ENST00000442934.6:ENST00000579180.2:ENST00000579205.5:ENST00000579505.5:ENST00000582772.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	24	2	4.07186	4.13448	4.1971	0.0367539	0.0279478	0.138959	0.137011
chr18	70127001	70127101	6986653	0	-	0.36	(0.35,0.378]	chr18	691515	1	SS5_PROX	SS5_PROX:INTRON	RTTN	ENSG00000176225.15	ENST00000640769.2:ENST00000255674.11:ENST00000583043.5:ENST00000679113.1:ENST00000639128.1:ENST00000677824.1:ENST00000581161.5:ENST00000640931.1:ENST00000638251.1:ENST00000640408.1:ENST00000640376.1:ENST00000638298.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	24	2	4.07186	4.13448	4.1971	0.0367539	0.0279478	0.138959	0.137011
chr2	39406200	39406300	1103990	0	-	0.36	(0.35,0.378]	chr2	118511	265	INTRON	INTRON	MAP4K3	ENSG00000011566.15	ENST00000263881.8:ENST00000341681.9:ENST00000429397.5:ENST00000437968.1:ENST00000484274.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	24	2	4.07186	4.13448	4.1971	0.0367539	0.0279478	0.138959	0.137011
chr5	141616999	141617099	2740169	0	-	0.37	(0.35,0.378]	chr5	258168	284	INTRON	INTRON	DIAPH1	ENSG00000131504.18	ENST00000647433.1:ENST00000389054.8:ENST00000518047.5:ENST00000523100.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	52	2	2.86451	4.13448	5.40445	0.0109111	0.00114224	0.0923273	0.0307966
chr6	5131517	5131617	3048780	0	-	0.37	(0.35,0.378]	chr6	283804	177	INTRON	INTRON	LYRM4	ENSG00000214113.11	ENST00000330636.9:ENST00000468929.5:ENST00000464010.5:ENST00000463032.5:ENST00000458438.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	52	2	2.86451	4.13448	5.40445	0.0109111	0.00114224	0.0923273	0.0307966
chr7	22636211	22636310	3499735	0	-	0.363636	(0.35,0.378]	chr7	326651	29	INTRON	INTRON	STEAP1B	ENSG00000105889.16	ENST00000442252.1:ENST00000650428.1:ENST00000649402.1	protein_coding	processed_transcript	protein_coding	processed_transcript	0	24	2	4.07186	4.13448	4.1971	0.0367539	0.0279478	0.138959	0.137011
chr7	86976569	86976669	3564600	0	-	0.37	(0.35,0.378]	chr7	332199	107	INTRON	INTRON	ELAPOR2	ENSG00000164659.15	ENST00000450689.7:ENST00000444627.5:ENST00000423294.5	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	4.07186	4.13448	4.1971	0.0367539	0.0279478	0.138959	0.137011
chr7	100343690	100343788	3364414	0	+	0.367347	(0.35,0.378]	chr7	314641	25	INTRON	INTRON	STAG3L5P:STAG3L5P-PVRIG2P-PILRB	ENSG00000242294.6:ENSG00000272752.6	ENST00000473757.5:ENST00000470714.5:ENST00000310771.8:ENST00000483329.6:ENST00000444874.5:ENST00000488972.6:ENST00000493499.1	lncRNA	retained_intron	lncRNA:transcribed_unprocessed_pseudogene	retained_intron:lncRNA:processed_transcript	0	24	2	4.07186	4.13448	4.1971	0.0367539	0.0279478	0.138959	0.137011
chr8	28911958	28912058	3725071	0	+	0.36	(0.35,0.378]	chr8	346251	198	INTRON	INTRON	HMBOX1	ENSG00000147421.18	ENST00000287701.15:ENST00000558662.5:ENST00000519662.5:ENST00000397358.7:ENST00000560599.5:ENST00000523613.5:ENST00000560357.5:ENST00000521516.5:ENST00000519047.5:ENST00000560269.1:ENST00000355231.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	24	2	4.07186	4.13448	4.1971	0.0367539	0.0279478	0.138959	0.137011
chr8	60197878	60197978	3956057	0	-	0.36	(0.35,0.378]	chr8	362946	75	INTRON	INTRON	CA8	ENSG00000178538.10	ENST00000317995.5	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	4.07186	4.13448	4.1971	0.0367539	0.0279478	0.138959	0.137011
chr8	125271956	125272055	3855293	0	+	0.373737	(0.35,0.378]	chr8	355249	893	INTRON	INTRON	NSMCE2	ENSG00000156831.8	ENST00000517532.5:ENST00000287437.8:ENST00000522563.5:ENST00000517315.1	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	4.07186	4.13448	4.1971	0.0367539	0.0279478	0.138959	0.137011
chr9	105695961	105696059	4182552	0	+	0.367347	(0.35,0.378]	chr9	381483	8	INTRON	INTRON	TMEM38B	ENSG00000095209.12	ENST00000374692.8:ENST00000434214.1	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	4.07186	4.13448	4.1971	0.0367539	0.0279478	0.138959	0.137011
chr8	47952220	47952319	3945680	0	-	0.343434	(0.32,0.35]	chr8	361951	78	INTRON	INTRON	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7	protein_coding	protein_coding	protein_coding	protein_coding	1	54	2	2.84569	4.13437	5.42305	0.0121137	0.00149027	0.0962599	0.035
chr3	9400169	9400268	1358909	0	+	0.282828	(0.28,0.32]	chr3	142655	18	INTRON	INTRON	SETD5	ENSG00000168137.20	ENST00000402198.7:ENST00000431285.5:ENST00000683012.1:ENST00000463180.5:ENST00000478475.5:ENST00000415650.5:ENST00000682536.1:ENST00000663774.1:ENST00000665872.1:ENST00000666307.1:ENST00000693430.1:ENST00000691925.1:ENST00000684606.1:ENST00000691175.1:ENST00000688835.1:ENST00000683262.1:ENST00000443339.5:ENST00000406341.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	75	2	2.67153	4.13434	5.59715	0.00436402	0.00123856	0.060356	0.0322669
chr6	17647119	17647212	3065602	0	-	0.301075	(0.28,0.32]	chr6	284806	6	INTRON	INTRON	NUP153	ENSG00000124789.12	ENST00000613258.4:ENST00000537253.5:ENST00000262077.3	protein_coding	protein_coding	protein_coding	protein_coding	2	75	2	2.67153	4.13434	5.59715	0.00436402	0.00123856	0.060356	0.0322669
chr6	35844798	35844898	3088041	0	-	0.23	[0,0.28]	chr6	288820	18	INTRON	INTRON	SRPK1	ENSG00000096063.16	ENST00000373825.7:ENST00000423325.6:ENST00000346162.10:ENST00000361690.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	137	2	1.73044	4.13428	6.53812	0.0161924	7.45557e-5	0.109464	0.0077367
chr6	52364086	52364185	2875486	0	+	0.393939	(0.378,0.408]	chr6	272897	12	INTRON	INTRON	PAQR8:EFHC1	ENSG00000170915.9:ENSG00000096093.16	ENST00000512121.1:ENST00000635984.1:ENST00000637849.1:ENST00000635760.1:ENST00000442253.3:ENST00000491749.2:ENST00000360726.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	277	2	3.55152	4.134119999999999	4.71672	1.76817e-6	7.08804e-8	8.01021e-4	1.12152e-4
chr1	161116153	161116252	573816	0	-	0.474747	(0.44,0.476]	chr1	69586	134	INTRON	INTRON	PFDN2	ENSG00000143256.5	ENST00000468311.1:ENST00000368010.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	24	2	3.8344	4.134085	4.43377	0.041276	0.0162803	0.161534	0.101453
chr1	174227351	174227451	257785	0	+	0.46	(0.44,0.476]	chr1	30734	58	INTRON	INTRON	RABGAP1L	ENSG00000152061.24	ENST00000357444.10:ENST00000251507.8:ENST00000681986.1:ENST00000635248.1:ENST00000457696.1:ENST00000487987.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	24	2	3.8344	4.134085	4.43377	0.041276	0.0162803	0.161534	0.101453
chr14	104758453	104758550	5829246	0	+	0.463918	(0.44,0.476]	chr14	553371	11	EXON_MRNA	EXON_MRNA:INTRON	SIVA1	ENSG00000184990.13	ENST00000329967.11:ENST00000347067.9:ENST00000553819.5:ENST00000556431.1:ENST00000556195.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	24	2	3.8344	4.134085	4.43377	0.041276	0.0162803	0.161534	0.101453
chr19	4424573	4424673	7001987	0	+	0.45	(0.44,0.476]	chr19	694544	3	INTRON	INTRON	CHAF1A	ENSG00000167670.16	ENST00000301280.10:ENST00000587739.1:ENST00000585371.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	24	2	3.8344	4.134085	4.43377	0.041276	0.0162803	0.161534	0.101453
chr19	18519020	18519120	7152984	0	-	0.46	(0.44,0.476]	chr19	722886	432	INTRON	INTRON	ELL	ENSG00000105656.13	ENST00000262809.9:ENST00000594635.6:ENST00000596915.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	24	2	3.8344	4.134085	4.43377	0.041276	0.0162803	0.161534	0.101453
chr2	101802772	101802872	837111	0	+	0.47	(0.44,0.476]	chr2	93910	50	INTRON	INTRON	MAP4K4	ENSG00000071054.17	ENST00000427603.5:ENST00000324219.9:ENST00000350878.9:ENST00000425019.6:ENST00000625522.3:ENST00000413150.6:ENST00000634702.1:ENST00000456652.5:ENST00000347699.8:ENST00000417294.5:ENST00000627726.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	24	2	3.8344	4.134085	4.43377	0.041276	0.0162803	0.161534	0.101453
chr2	218543736	218543835	1329685	0	-	0.454545	(0.44,0.476]	chr2	139231	87	INTRON	INTRON	USP37	ENSG00000135913.11	ENST00000258399.8:ENST00000454775.5:ENST00000415516.5:ENST00000418019.5:ENST00000478329.1:ENST00000338465.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	24	2	3.8344	4.134085	4.43377	0.041276	0.0162803	0.161534	0.101453
chr22	20030275	20030374	7477835	0	+	0.444444	(0.44,0.476]	chr22	762628	86	INTRON	INTRON	TANGO2	ENSG00000183597.16	ENST00000401886.5:ENST00000471707.5:ENST00000432198.5:ENST00000475446.5:ENST00000420290.6:ENST00000432883.5:ENST00000434570.6:ENST00000447208.6:ENST00000456048.5:ENST00000411907.5:ENST00000398042.6:ENST00000399807.7:ENST00000450664.5:ENST00000450019.5:ENST00000327374.9:ENST00000479679.5:ENST00000430807.5:ENST00000401833.5:ENST00000434168.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	24	2	3.8344	4.134085	4.43377	0.041276	0.0162803	0.161534	0.101453
chr3	155873783	155873883	1537158	0	+	0.47	(0.44,0.476]	chr3	160082	25	INTRON	INTRON	GMPS	ENSG00000163655.16	ENST00000496455.7:ENST00000295920.7	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	3.8344	4.134085	4.43377	0.041276	0.0162803	0.161534	0.101453
chr8	129008443	129008542	4055325	0	-	0.464646	(0.44,0.476]	chr8	369453	161	INTRON	INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676248.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1	lncRNA	lncRNA	lncRNA	lncRNA	0	24	2	3.8344	4.134085	4.43377	0.041276	0.0162803	0.161534	0.101453
chr9	33873939	33874039	4110794	0	+	0.47	(0.44,0.476]	chr9	374688	54	INTRON	INTRON	UBE2R2	ENSG00000107341.5	ENST00000263228.4	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	3.8344	4.134085	4.43377	0.041276	0.0162803	0.161534	0.101453
chr14	100365576	100365676	5968794	0	-	0.36	(0.35,0.378]	chr14	567105	1	SS3_ADJ	SS3_ADJ:SS3_PROX:SS5_PROX:INTRON	WARS1	ENSG00000140105.18	ENST00000392882.7:ENST00000358655.8:ENST00000355338.6:ENST00000344102.9:ENST00000557135.5:ENST00000556645.5:ENST00000553395.5:ENST00000556504.5:ENST00000557722.5:ENST00000557297.5:ENST00000556435.5:ENST00000553808.5:ENST00000554331.5:ENST00000555063.5:ENST00000556338.5:ENST00000557239.5:ENST00000556698.5:ENST00000553524.5:ENST00000555410.5:ENST00000556579.5:ENST00000554772.5:ENST00000556660.5:ENST00000556783.5:ENST00000553413.5:ENST00000557094.5:ENST00000553769.6:ENST00000553545.5:ENST00000554820.5:ENST00000557347.5:ENST00000554509.5:ENST00000556209.5:ENST00000554605.5:ENST00000555813.5:ENST00000556695.5:ENST00000556295.5:ENST00000555031.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	86	2	2.90945	4.133865	5.35828	0.00135282	3.57589e-4	0.0336321	0.0169202
chr16	70275887	70275985	6510355	0	-	0.44898	(0.44,0.476]	chr16	630585	36	INTRON	INTRON	AARS1	ENSG00000090861.17	ENST00000674963.1:ENST00000675643.1:ENST00000675917.1:ENST00000674691.1:ENST00000261772.13:ENST00000675569.1:ENST00000676209.1:ENST00000676211.1:ENST00000676040.1:ENST00000675953.1:ENST00000675691.1:ENST00000676004.1:ENST00000675270.1:ENST00000675403.1:ENST00000676212.1:ENST00000675045.1:ENST00000675035.1:ENST00000676168.1:ENST00000674652.1:ENST00000675133.1:ENST00000675120.1:ENST00000674811.1:ENST00000674512.1:ENST00000675853.1:ENST00000565361.3:ENST00000676247.1:ENST00000674848.1:ENST00000674962.1:ENST00000675371.1:ENST00000675986.1:ENST00000674768.1:ENST00000675297.1:ENST00000675751.1:ENST00000564359.6:ENST00000675338.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	74	2	3.50659	4.133635	4.76068	0.00653414	5.83536e-5	0.0699952	0.00625795
chr6	20152623	20152696	3069793	0	-	0.479452	(0.476,0.515]	chr6	285291	1	CDS	CDS:EXON_MRNA	MBOAT1	ENSG00000172197.11	ENST00000324607.8	protein_coding	protein_coding	protein_coding	protein_coding	2	65	2	2.72507	4.133585	5.5421	0.0029369	3.56777e-4	0.0496505	0.0175154
chr16	21438248	21438348	6460697	0	-	0.42	(0.408,0.44]	chr16	623222	68	INTRON	INTRON	NPIPB3	ENSG00000169246.16	ENST00000521589.5:ENST00000545358.5:ENST00000543368.1:ENST00000544154.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	65	2	2.78289	4.133525000000001	5.48416	0.0022785	5.43528e-4	0.0437013	0.0215026
chr1	55045625	55045724	108534	0	+	0.525253	(0.515,0.57]	chr1	14170	12	INTRON	INTRON	PCSK9	ENSG00000169174.11	ENST00000673726.1:ENST00000302118.5:ENST00000673903.1:ENST00000673662.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	84	2	3.07488	4.13348	5.19208	3.4344e-4	1.38584e-4	0.0164987	0.0107072
chr22	19101666	19101766	7551807	0	-	0.45	(0.44,0.476]	chr22	771903	118	INTRON	INTRON	DGCR2	ENSG00000070413.20	ENST00000537045.5:ENST00000545799.5:ENST00000263196.12:ENST00000389262.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	191	2	4.12173	4.133435	4.14514	2.6569e-6	9.51742e-7	0.00115411	5.54959e-4
chr20	38082297	38082397	7269371	0	+	0.29	(0.28,0.32]	chr20	738717	118	INTRON	INTRON	RPRD1B	ENSG00000101413.12	ENST00000462548.6:ENST00000373433.9:ENST00000449186.2:ENST00000618318.1:ENST00000614670.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	56	2	3.22074	4.133265	5.04579	0.00714672	0.00362783	0.0723634	0.055479
chr3	16276498	16276597	1374991	0	+	0.30303	(0.28,0.32]	chr3	144974	38	INTRON	INTRON	OXNAD1	ENSG00000154814.14	ENST00000627468.2:ENST00000605932.5:ENST00000442255.5:ENST00000435829.6:ENST00000285083.10:ENST00000452581.5:ENST00000606098.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	56	2	2.91832	4.132985	5.34765	0.0102484	0.00287138	0.089002	0.0474836
chr1	229272068	229272168	333279	0	+	0.37	(0.35,0.378]	chr1	38810	3	INTRON	INTRON	RAB4A	ENSG00000168118.12	ENST00000618010.4:ENST00000481981.1:ENST00000366690.5:ENST00000473894.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	51	2	3.10863	4.13293	5.15723	0.00470896	0.00272706	0.0631419	0.0467523
chr11	46068641	46068740	4944715	0	-	0.363636	(0.35,0.378]	chr11	463349	178	INTRON	INTRON	PHF21A	ENSG00000135365.17	ENST00000676320.1:ENST00000323180.10:ENST00000530587.6:ENST00000693049.1:ENST00000690620.1:ENST00000418153.6:ENST00000525676.6:ENST00000689695.1:ENST00000685188.1:ENST00000532883.5:ENST00000524497.5:ENST00000531959.5:ENST00000687985.1:ENST00000693122.1:ENST00000529734.5:ENST00000529782.5:ENST00000688222.1:ENST00000691784.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	51	2	3.10863	4.13293	5.15723	0.00470896	0.00272706	0.0631419	0.0467523
chr11	5438078	5438177	4897601	0	-	0.393939	(0.378,0.408]	chr11	459189	66	INTRON	INTRON	HBG2:ENSG00000239920:HBE1:OR51B5	ENSG00000196565.15:ENSG00000239920.2:ENSG00000213931.7:ENSG00000167355.8	ENST00000380252.6:ENST00000380259.7:ENST00000292896.3:ENST00000380237.5:ENST00000420726.6:ENST00000420465.6:ENST00000415970.6:ENST00000418729.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:nonsense_mediated_decay:processed_transcript	1	52	2	2.71183	4.132855	5.55388	0.0170789	5.01023e-4	0.110899	0.0206993
chr1	160301851	160301950	571883	0	-	0.252525	[0,0.28]	chr1	69300	22	INTRON	INTRON	COPA	ENSG00000122218.17	ENST00000241704.8:ENST00000696204.1:ENST00000696203.1:ENST00000696202.1:ENST00000649963.1:ENST00000696208.1:ENST00000696207.1:ENST00000696206.1:ENST00000649676.1:ENST00000368069.7:ENST00000647693.1:ENST00000649787.1:ENST00000650154.1:ENST00000647799.1:ENST00000648805.1:ENST00000647683.1:ENST00000649231.1:ENST00000648501.1:ENST00000696209.1:ENST00000696210.1:ENST00000696211.1:ENST00000647899.1:ENST00000648632.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	67	2	2.54624	4.13267	5.7191	0.0388449	3.82357e-4	0.143072	0.0176949
chr17	19062384	19062479	6570503	0	+	0.694737	(0.57,1]	chr17	638906	6	EXON_SMALL	EXON_SMALL	SNORD3B-1	ENSG00000265185.6	ENST00000577988.2	snoRNA	snoRNA	snoRNA	snoRNA	12	128	2	2.73219	4.132505	5.53282	7.64124e-6	1.83743e-6	0.00197283	9.15885e-4
chr3	47673194	47673293	1683966	0	-	0.414141	(0.408,0.44]	chr3	172014	21	INTRON	INTRON	SMARCC1	ENSG00000173473.11	ENST00000254480.10:ENST00000425518.5:ENST00000483847.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	53	2	2.71911	4.13236	5.54561	0.0189489	1.20601e-4	0.108861	0.00938389
chr11	95800384	95800483	4853631	0	+	0.464646	(0.44,0.476]	chr11	452698	6	INTRON	INTRON	CEP57	ENSG00000166037.11	ENST00000537677.5:ENST00000325486.9:ENST00000325542.10:ENST00000538095.1:ENST00000544522.5:ENST00000539855.5:ENST00000541365.5:ENST00000535497.1:ENST00000540830.5:ENST00000538658.5:ENST00000541150.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	143	2	4.05942	4.132350000000001	4.20528	4.25825e-5	1.73099e-6	0.00555805	7.91759e-4
chr1	19162319	19162419	386316	0	-	0.44	(0.408,0.44]	chr1	45972	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	UBR4	ENSG00000127481.15	ENST00000375254.8:ENST00000417040.1:ENST00000419533.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	79	2	2.7371	4.13234	5.52758	7.83328e-4	4.54953e-4	0.0257505	0.0196892
chr11	62797486	62797586	4961351	0	-	0.5	(0.476,0.515]	chr11	466910	1	SS3_PROX	SS3_PROX:INTRON	NXF1	ENSG00000162231.14	ENST00000531709.6:ENST00000294172.7:ENST00000532297.5:ENST00000530875.5:ENST00000531872.5:ENST00000531579.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	65	2	2.81076	4.13233	5.4539	0.00203568	5.16081e-4	0.0417667	0.0208667
chr16	46696402	46696493	6342786	0	+	0.450549	(0.44,0.476]	chr16	608756	3	SS5_PROX	SS5_PROX:INTRON	ORC6	ENSG00000091651.9	ENST00000563599.5:ENST00000219097.7:ENST00000568364.6:ENST00000566860.1:ENST00000575571.5:ENST00000567000.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	65	2	2.86452	4.1322600000000005	5.4	0.00159222	7.02611e-4	0.0367961	0.024224
chr12	53475406	53475501	5143137	0	+	0.347368	(0.32,0.35]	chr12	485453	3	UTR3	UTR3:EXON_MRNA:INTRON	PCBP2	ENSG00000197111.16	ENST00000546463.6:ENST00000437231.5:ENST00000447282.5:ENST00000359282.9:ENST00000549863.5:ENST00000359462.9:ENST00000552296.6:ENST00000552819.5:ENST00000455667.7:ENST00000439930.7:ENST00000548933.5:ENST00000562264.5:ENST00000550585.5:ENST00000553064.6:ENST00000547859.2:ENST00000547048.5:ENST00000550733.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	53	2	3.13277	4.132	5.13123	0.00458313	0.00394704	0.0622676	0.0548259
chr6	12041941	12042041	2814525	0	+	0.36	(0.35,0.378]	chr6	264800	28	INTRON	INTRON	HIVEP1	ENSG00000095951.17	ENST00000491710.5:ENST00000487103.5:ENST00000379388.7:ENST00000627968.2:ENST00000541134.5:ENST00000442081.6:ENST00000478545.1	protein_coding	protein_coding	protein_coding	protein_coding	1	56	2	2.66547	4.13197	5.59847	0.0233639	1.39739e-4	0.118323	0.0101825
chrX	101140852	101140940	7694574	0	+	0.363636	(0.35,0.378]	chrX	787406	2	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	CENPI	ENSG00000102384.14	ENST00000684367.1:ENST00000423383.3:ENST00000682095.1:ENST00000372927.5:ENST00000372926.5	protein_coding	protein_coding	protein_coding	protein_coding	1	56	2	2.66547	4.13197	5.59847	0.0233639	1.39739e-4	0.118323	0.0101825
chr5	176487086	176487183	2552561	0	+	0.340206	(0.32,0.35]	chr5	243682	2	INTRON	INTRON	FAF2	ENSG00000113194.13	ENST00000261942.7:ENST00000510446.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	53	2	3.07975	4.13195	5.18415	0.00554235	0.00333629	0.0674105	0.0512081
chr17	20013648	20013748	6571828	0	+	0.47	(0.44,0.476]	chr17	639047	26	INTRON	INTRON	SPECC1	ENSG00000128487.19	ENST00000677148.1:ENST00000679048.1:ENST00000678019.1:ENST00000678315.1:ENST00000678321.1:ENST00000676570.1:ENST00000678651.1:ENST00000679049.1:ENST00000472876.5:ENST00000467722.3:ENST00000583528.6:ENST00000680019.1:ENST00000395527.9:ENST00000681593.1:ENST00000680830.1:ENST00000680124.1:ENST00000583482.7:ENST00000679255.1:ENST00000681202.1:ENST00000677914.1:ENST00000578321.2:ENST00000680374.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	52	2	2.86231	4.131914999999999	5.40152	0.012214	2.39829e-4	0.0910127	0.0136403
chr3	28248759	28248858	1390615	0	+	0.464646	(0.44,0.476]	chr3	145630	65	INTRON	INTRON	CMC1	ENSG00000187118.14	ENST00000477739.1:ENST00000423894.5:ENST00000466830.6:ENST00000334841.10:ENST00000418849.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	52	2	2.86231	4.131914999999999	5.40152	0.012214	2.39829e-4	0.0910127	0.0136403
chr12	990608	990693	5255911	0	-	0.576471	(0.57,1]	chr12	500143	1	SS5_PROX	SS5_PROX:INTRON	ENSG00000250132	ENSG00000250132.6	ENST00000545629.5:ENST00000539259.1	lncRNA	lncRNA	lncRNA	lncRNA	1	33	2	3.5592	4.131735	4.70427	9.25341e-4	4.21089e-4	0.0278396	0.0183576
chr9	131446742	131446822	4217503	0	+	0.4625	(0.44,0.476]	chr9	386757	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PRRC2B	ENSG00000288701.1	ENST00000684596.1:ENST00000683519.1:ENST00000682501.1:ENST00000684694.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	52	2	3.07862	4.131715	5.18481	0.0060153	6.21872e-4	0.0674604	0.0223951
chr1	225781203	225781303	327276	0	+	0.29	(0.28,0.32]	chr1	37651	28	INTRON	INTRON	SRP9	ENSG00000143742.14	ENST00000626563.2:ENST00000619790.4:ENST00000304786.12:ENST00000650651.1:ENST00000366839.8:ENST00000651465.1:ENST00000651761.1:ENST00000651653.1:ENST00000366838.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	100	2	2.25881	4.131585	6.00436	0.009974	4.77464e-5	0.0842795	0.00563886
chr2	31884160	31884259	1089843	0	-	0.242424	[0,0.28]	chr2	116867	3	INTRON	INTRON	MEMO1:DPY30	ENSG00000162959.14:ENSG00000162961.14	ENST00000295065.9:ENST00000446765.5:ENST00000404530.6:ENST00000379383.7:ENST00000490459.5:ENST00000426310.6:ENST00000422936.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	60	2	3.00498	4.131565	5.25815	0.00876063	0.0066548	0.0846118	0.0703807
chr4	150959443	150959543	2271213	0	-	0.39	(0.378,0.408]	chr4	220921	300	INTRON	INTRON	LRBA	ENSG00000198589.14	ENST00000357115.9:ENST00000651943.2:ENST00000510413.5:ENST00000651035.1:ENST00000507224.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	54	2	2.72993	4.13146	5.53299	0.0188736	1.47095e-4	0.108861	0.0105341
chr18	13038169	13038269	6877050	0	+	0.3	(0.28,0.32]	chr18	681410	4	SS3_PROX	SS3_PROX:INTRON	CEP192	ENSG00000101639.19	ENST00000325971.12:ENST00000506447.5:ENST00000589596.5:ENST00000513432.5:ENST00000511820.6:ENST00000510237.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	75	2	2.74418	4.13143	5.51868	0.00328589	0.00162747	0.0527031	0.0367966
chr12	49058717	49058816	5320830	0	-	0.616162	(0.57,1]	chr12	506907	30	INTRON	INTRON	KMT2D	ENSG00000167548.18	ENST00000683543.2:ENST00000301067.12:ENST00000692465.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	33	2	3.13254	4.131375	5.13021	0.00310655	1.21664e-4	0.0512344	0.00992813
chr1	19228005	19228097	386973	0	-	0.467391	(0.44,0.476]	chr1	46167	7	EXON_MRNA	EXON_MRNA:INTRON	EMC1	ENSG00000127463.16	ENST00000477853.6:ENST00000688219.1:ENST00000690732.1:ENST00000690451.1:ENST00000688667.1:ENST00000685099.1:ENST00000685594.1:ENST00000690823.1:ENST00000692207.1:ENST00000688332.1:ENST00000693007.1:ENST00000688918.1:ENST00000691945.1:ENST00000375199.7:ENST00000375208.7:ENST00000486405.2:ENST00000494770.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	49	2	3.36231	4.131155	4.9	0.00423315	0.00161678	0.0572185	0.0369204
chr2	127492488	127492588	1224394	0	-	0.47	(0.44,0.476]	chr2	130340	4	SS3_PROX	SS3_PROX:INTRON	IWS1	ENSG00000163166.15	ENST00000637187.1:ENST00000295321.9	protein_coding	protein_coding	protein_coding	protein_coding	1	49	2	3.36231	4.131155	4.9	0.00423315	0.00161678	0.0572185	0.0369204
chr6	42612591	42612691	2865551	0	+	0.31	(0.28,0.32]	chr6	271055	3	SS5_PROX	SS5_PROX:INTRON	UBR2	ENSG00000024048.11	ENST00000372899.6:ENST00000372901.2:ENST00000372903.6	protein_coding	protein_coding	protein_coding	protein_coding	3	91	2	2.5905300000000002	4.13105	5.67157	0.0020216	9.48957e-4	0.0416117	0.0281755
chr12	110579613	110579713	5410456	0	-	0.44	(0.408,0.44]	chr12	516631	273	INTRON	INTRON	PPTC7	ENSG00000196850.6	ENST00000354300.5	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	3.83494	4.131035	4.42713	0.0411442	0.0173083	0.161534	0.104099
chr14	22910095	22910186	5841525	0	-	0.417582	(0.408,0.44]	chr14	555186	1	INTRON	INTRON	RBM23	ENSG00000100461.18	ENST00000359890.8:ENST00000555209.5:ENST00000399922.6:ENST00000557667.5:ENST00000346528.9:ENST00000542016.6:ENST00000307814.10:ENST00000557403.5:ENST00000555722.5:ENST00000553920.5:ENST00000557227.5:ENST00000555714.5:ENST00000554256.5:ENST00000556687.5:ENST00000553902.5:ENST00000554955.5:ENST00000556984.5:ENST00000557549.5:ENST00000555676.5:ENST00000557571.5:ENST00000556862.5:ENST00000557464.5:ENST00000554618.5:ENST00000556365.1:ENST00000553876.2:ENST00000555691.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	24	2	3.83494	4.131035	4.42713	0.0411442	0.0173083	0.161534	0.104099
chr15	40325416	40325516	6001895	0	+	0.43	(0.408,0.44]	chr15	570711	10	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	INAFM2	ENSG00000259330.3	ENST00000638170.2:ENST00000560415.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	24	2	3.83494	4.131035	4.42713	0.0411442	0.0173083	0.161534	0.104099
chr16	84608520	84608620	6533689	0	-	0.42	(0.408,0.44]	chr16	633090	179	INTRON	INTRON	COTL1	ENSG00000103187.8	ENST00000262428.5:ENST00000564057.1:ENST00000564662.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	24	2	3.83494	4.131035	4.42713	0.0411442	0.0173083	0.161534	0.104099
chr17	41825857	41825957	6769472	0	-	0.43	(0.408,0.44]	chr17	666362	2	SS3_PROX	SS3_PROX:INTRON	NT5C3B	ENSG00000141698.17	ENST00000435506.7:ENST00000523903.5:ENST00000469698.5:ENST00000517701.5:ENST00000521789.5:ENST00000470690.5:ENST00000393910.5:ENST00000415460.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	24	2	3.83494	4.131035	4.42713	0.0411442	0.0173083	0.161534	0.104099
chr17	74750681	74750780	6672754	0	+	0.434343	(0.408,0.44]	chr17	651118	10	INTRON	INTRON	SLC9A3R1	ENSG00000109062.12	ENST00000262613.10:ENST00000583369.5	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	3.83494	4.131035	4.42713	0.0411442	0.0173083	0.161534	0.104099
chr19	56303465	56303564	7215436	0	-	0.434343	(0.408,0.44]	chr19	732988	67	INTRON	INTRON	ZSCAN5A	ENSG00000131848.10	ENST00000683990.1:ENST00000587340.5:ENST00000587492.5:ENST00000593106.5:ENST00000592509.5:ENST00000588955.5:ENST00000588442.5:ENST00000592679.5:ENST00000590675.1:ENST00000591078.5:ENST00000589279.5:ENST00000585670.5:ENST00000587075.1:ENST00000587614.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	24	2	3.83494	4.131035	4.42713	0.0411442	0.0173083	0.161534	0.104099
chr3	60177033	60177133	1711384	0	-	0.43	(0.408,0.44]	chr3	176138	963	INTRON	INTRON	FHIT	ENSG00000189283.10	ENST00000492590.6:ENST00000476844.5:ENST00000468189.5:ENST00000488467.5	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	3.83494	4.131035	4.42713	0.0411442	0.0173083	0.161534	0.104099
chr4	168899861	168899961	2293566	0	-	0.44	(0.408,0.44]	chr4	222048	47	INTRON	INTRON	CBR4	ENSG00000145439.12	ENST00000510042.5:ENST00000509108.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	0	24	2	3.83494	4.131035	4.42713	0.0411442	0.0173083	0.161534	0.104099
chr8	89707232	89707332	3984773	0	-	0.42	(0.408,0.44]	chr8	364981	583	INTRON	INTRON	RIPK2-DT	ENSG00000251136.10	ENST00000688654.1:ENST00000690564.1:ENST00000661105.1:ENST00000685145.1:ENST00000519655.6:ENST00000656898.2:ENST00000685787.1:ENST00000693018.1:ENST00000691313.1:ENST00000691446.1:ENST00000524190.2:ENST00000691897.1:ENST00000685988.1:ENST00000691595.1:ENST00000688855.1	lncRNA	lncRNA	lncRNA	lncRNA	0	24	2	3.83494	4.131035	4.42713	0.0411442	0.0173083	0.161534	0.104099
chr9	89319897	89319997	4153034	0	+	0.41	(0.408,0.44]	chr9	378799	1	SS5_PROX	SS5_PROX:INTRON	SECISBP2	ENSG00000187742.15	ENST00000375807.8:ENST00000339901.8:ENST00000534113.6	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	3.83494	4.131035	4.42713	0.0411442	0.0173083	0.161534	0.104099
chr1	246026158	246026258	675892	0	-	0.35	(0.32,0.35]	chr1	79713	377	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000391836.3:ENST00000464398.1:ENST00000453676.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	78	2	2.53107	4.130955	5.73084	0.00860484	1.07676e-4	0.0784134	0.00878438
chr22	20551748	20551827	7479802	0	+	0.417722	(0.408,0.44]	chr22	762984	1	SS5_PROX	SS5_PROX:INTRON	MED15	ENSG00000099917.17	ENST00000445987.5:ENST00000444094.5:ENST00000414658.5:ENST00000433831.5:ENST00000432052.5:ENST00000292733.11:ENST00000263205.11:ENST00000477824.5:ENST00000406969.5:ENST00000382974.6:ENST00000441501.5:ENST00000445189.5:ENST00000451058.5:ENST00000473028.5:ENST00000457322.5:ENST00000428629.5:ENST00000424287.5:ENST00000423862.5:ENST00000420849.5:ENST00000487550.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	172	2	3.78754	4.130895	4.47425	1.01578e-5	1.29864e-6	0.00248141	6.70572e-4
chr18	209570	209670	6855350	0	+	0.41	(0.408,0.44]	chr18	679567	2	SS3_PROX	SS3_PROX:INTRON	USP14	ENSG00000101557.15	ENST00000582707.5:ENST00000400266.7:ENST00000261601.8:ENST00000578942.5:ENST00000383589.6:ENST00000578786.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	67	2	3.12458	4.1308	5.13702	0.00202889	4.61817e-4	0.04086	0.0194611
chr14	64486224	64486323	5909776	0	-	0.585859	(0.57,1]	chr14	561287	83	UTR3	UTR3:EXON_MRNA:INTRON	ZBTB25	ENSG00000089775.12	ENST00000555220.5:ENST00000555424.1:ENST00000608382.6	protein_coding	protein_coding	protein_coding	protein_coding	2	48	2	3.48429	4.130795	4.7773	5.07088e-4	3.68893e-5	0.0202328	0.00515993
chr17	75796290	75796390	6676528	0	+	0.37	(0.35,0.378]	chr17	651915	22	INTRON	INTRON	UNK	ENSG00000132478.10	ENST00000589666.6:ENST00000592629.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	51	2	3.05136	4.13077	5.21018	0.00578894	0.00228003	0.0684334	0.0426265
chr19	5610774	5610860	7124235	0	-	0.325581	(0.32,0.35]	chr19	717016	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SAFB2	ENSG00000130254.12	ENST00000252542.9:ENST00000591123.5:ENST00000592599.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	129	2	2.04561	4.130765	6.21592	0.00262528	5.83185e-5	0.0470828	0.00668534
chr20	41090584	41090682	7274130	0	+	0.459184	(0.44,0.476]	chr20	739249	57	INTRON	INTRON	TOP1	ENSG00000198900.7	ENST00000361337.3:ENST00000681113.1:ENST00000681058.1:ENST00000681392.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	49	2	2.9586	4.13075	5.3029	0.00758318	0.00102616	0.0773151	0.029231300000000002
chr19	3020413	3020513	7117144	0	-	0.44	(0.408,0.44]	chr19	715625	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	TLE2	ENSG00000065717.15	ENST00000426948.6:ENST00000455444.6:ENST00000262953.11:ENST00000591529.5:ENST00000586422.5:ENST00000443826.7:ENST00000590536.5:ENST00000589364.5:ENST00000587217.5:ENST00000591457.5:ENST00000590101.5:ENST00000587137.5:ENST00000590183.5:ENST00000592584.1:ENST00000587770.5:ENST00000592305.5:ENST00000591720.1:ENST00000587893.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	50	2	3.50731	4.130645	4.75398	0.00703931	8.5918e-4	0.0718189	0.0265787
chr4	126671972	126672072	2237429	0	-	0.42	(0.408,0.44]	chr4	219023	2065	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	1	50	2	3.50731	4.130645	4.75398	0.00703931	8.5918e-4	0.0718189	0.0265787
chr9	15499786	15499885	4235971	0	-	0.525253	(0.515,0.57]	chr9	389324	72	INTRON	INTRON	PSIP1	ENSG00000164985.15	ENST00000380738.8:ENST00000380733.9:ENST00000380716.8:ENST00000380715.5:ENST00000397519.6:ENST00000487363.5:ENST00000463712.6:ENST00000488797.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	93	2	3.88003	4.13059	4.38115	1.52864e-4	5.49576e-6	0.0112857	0.00162772
chr8	11860602	11860700	3908783	0	-	0.346939	(0.32,0.35]	chr8	358204	23	INTRON	INTRON	CTSB	ENSG00000164733.22	ENST00000677671.1:ENST00000678092.1:ENST00000679128.1:ENST00000677873.1:ENST00000676691.1:ENST00000678598.1:ENST00000353047.11:ENST00000677650.1:ENST00000526481.7:ENST00000676825.1:ENST00000678242.1:ENST00000677366.1:ENST00000677544.1:ENST00000530640.7:ENST00000677418.1:ENST00000677047.1:ENST00000676502.1:ENST00000531089.6:ENST00000678629.1:ENST00000678145.1:ENST00000678929.1:ENST00000677819.1:ENST00000677415.1:ENST00000678357.1:ENST00000676755.1:ENST00000679051.1:ENST00000453527.7:ENST00000678067.1:ENST00000679140.1:ENST00000677082.1:ENST00000533455.6:ENST00000531551.5:ENST00000534382.6:ENST00000679214.1:ENST00000531502.6:ENST00000534510.6:ENST00000677865.1:ENST00000533572.6:ENST00000345125.8:ENST00000526645.6:ENST00000534149.6:ENST00000505496.7:ENST00000532392.2:ENST00000676843.1:ENST00000524500.6:ENST00000525076.6:ENST00000527215.7:ENST00000528965.2:ENST00000532656.7:ENST00000526195.6:ENST00000678615.1:ENST00000527243.6:ENST00000530296.6:ENST00000534636.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	72	2	2.92893	4.130555	5.33218	0.00204346	0.00138	0.04086	0.0341261
chr16	18783806	18783899	6456609	0	-	0.408602	(0.408,0.44]	chr16	622510	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	RPS15A	ENSG00000134419.15	ENST00000322989.8:ENST00000572008.5:ENST00000563390.5:ENST00000574723.5:ENST00000576008.5:ENST00000562935.5:ENST00000569365.6:ENST00000576436.5:ENST00000575669.1:ENST00000565420.5:ENST00000563579.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	54	2	3.33067	4.130455	4.93024	0.0024459	0.00170369	0.0445752	0.0381936
chr1	246593236	246593336	350252	0	+	0.28	[0,0.28]	chr1	40496	9	INTRON	INTRON	CNST	ENSG00000162852.14	ENST00000483271.1:ENST00000366513.9:ENST00000366512.7:ENST00000366511.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	62	2	2.63238	4.130155	5.62793	0.0259691	0.0022037	0.133676	0.0417893
chr6	131614226	131614325	3221526	0	-	0.343434	(0.32,0.35]	chr6	299423	36	INTRON	INTRON	MED23	ENSG00000112282.18	ENST00000354577.8:ENST00000368068.8:ENST00000368060.7:ENST00000368058.5:ENST00000368053.8:ENST00000539158.1	protein_coding	protein_coding	protein_coding	protein_coding	1	53	2	3.18392	4.130105	5.07629	0.00468114	0.00379806	0.0600108	0.0562562
chr2	28895263	28895353	725180	0	+	0.488889	(0.476,0.515]	chr2	83774	3	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	WDR43	ENSG00000163811.12	ENST00000407426.8:ENST00000434238.1	protein_coding	protein_coding	protein_coding	protein_coding	3	82	2	2.01953	4.130015	6.2405	0.0163662	1.22785e-5	0.109586	0.00278588
chr1	33021803	33021903	416704	0	-	0.35	(0.32,0.35]	chr1	50344	1	SS3_PROX	SS3_PROX:INTRON	AK2	ENSG00000004455.18	ENST00000373449.7:ENST00000672715.1:ENST00000695598.1:ENST00000550338.6:ENST00000695599.1:ENST00000354858.11:ENST00000695600.1:ENST00000695601.1:ENST00000491241.2:ENST00000695602.1:ENST00000469238.2:ENST00000695603.1:ENST00000695604.1:ENST00000672308.1:ENST00000548033.5:ENST00000467905.5:ENST00000480134.5:ENST00000695605.1:ENST00000673291.1:ENST00000487289.1:ENST00000548559.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	53	2	3.0247	4.12995	5.2352	0.00671684	0.0028268	0.0738715	0.0472361
chr7	72909272	72909372	3330091	0	+	0.33	(0.32,0.35]	chr7	309565	178	INTRON	INTRON	POM121	ENSG00000196313.13	ENST00000627934.3:ENST00000395270.5	protein_coding	protein_coding	protein_coding	protein_coding	1	53	2	3.0247	4.12995	5.2352	0.00671684	0.0028268	0.0738715	0.0472361
chr1	39873162	39873262	428169	0	-	0.31	(0.28,0.32]	chr1	52028	71	INTRON	INTRON	TRIT1	ENSG00000043514.17	ENST00000316891.10:ENST00000648678.1:ENST00000537440.5:ENST00000372818.5:ENST00000462797.5:ENST00000441669.6:ENST00000495175.6:ENST00000491865.5:ENST00000541099.5:ENST00000492612.6:ENST00000489945.5:ENST00000486825.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	133	2	3.9451	4.12992	4.31474	3.16631e-4	2.35733e-5	0.0164236	0.00380411
chr7	128324794	128324894	3635062	0	-	0.51	(0.476,0.515]	chr7	337864	1	SS3_PROX	SS3_PROX:INTRON	RBM28	ENSG00000106344.8	ENST00000223073.6:ENST00000415472.6:ENST00000487602.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	53	2	3.33416	4.1297250000000005	4.92529	0.00230489	0.00180221	0.0428247	0.0392772
chr2	107703720	107703820	1205586	0	-	0.22	[0,0.28]	chr2	128525	4	SS3_PROX	SS3_PROX:INTRON	LINC01885:ENSG00000286769	ENSG00000237880.2:ENSG00000286769.1	ENST00000654481.1:ENST00000669817.1	lncRNA	lncRNA	lncRNA	lncRNA	4	245	2	3.49744	4.12971	4.76198	2.9249e-5	1.2089e-5	0.00429645	0.00276703
chr12	70315705	70315805	5167168	0	+	0.31	(0.28,0.32]	chr12	489427	43	INTRON	INTRON	CNOT2	ENSG00000111596.14	ENST00000418359.7:ENST00000552319.5:ENST00000550160.5:ENST00000551661.5:ENST00000551132.5:ENST00000548021.5:ENST00000550641.6:ENST00000229195.8:ENST00000552915.5:ENST00000549443.5:ENST00000552483.5:ENST00000547321.5:ENST00000553020.5:ENST00000548159.5:ENST00000549750.5:ENST00000551043.5:ENST00000548599.5:ENST00000550194.5:ENST00000551873.5:ENST00000547867.5:ENST00000552151.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	57	2	3.39204	4.129675	4.86731	0.0116253	0.00188405	0.0889104	0.0402736
chr3	152353610	152353710	1535837	0	+	0.28	[0,0.28]	chr3	160003	180	INTRON	INTRON	MBNL1	ENSG00000152601.18	ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000495875.6:ENST00000324210.10:ENST00000493459.5:ENST00000459747.1:ENST00000460591.5:ENST00000545754.5:ENST00000357472.7:ENST00000324196.9:ENST00000498502.5:ENST00000463374.5:ENST00000485910.5:ENST00000465907.6:ENST00000492948.5:ENST00000485509.5:ENST00000464596.5	protein_coding	protein_coding	protein_coding	protein_coding	3	98	2	2.42871	4.1296	5.83049	0.00461175	0.00112548	0.0626113	0.0306963
chr20	63953688	63953787	7363807	0	-	0.484848	(0.476,0.515]	chr20	751484	27	INTRON	INTRON	UCKL1	ENSG00000198276.16	ENST00000354216.11:ENST00000358711.7:ENST00000483710.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	65	2	2.63396	4.12959	5.62522	0.00426634	2.4907e-4	0.0596808	0.0145812
chr2	20322600	20322699	1076498	0	-	0.50505	(0.476,0.515]	chr2	115021	36	INTRON	INTRON	PUM2	ENSG00000055917.16	ENST00000338086.9:ENST00000361078.7:ENST00000442400.5:ENST00000420234.5:ENST00000429419.6:ENST00000432105.5:ENST00000446940.5:ENST00000424110.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	52	2	2.7646	4.12947	5.49434	0.0162075	1.62782e-4	0.101453	0.0109774
chr3	69751539	69751639	1448489	0	+	0.31	(0.28,0.32]	chr3	152746	1	SS3_PROX	SS3_PROX:INTRON	MITF	ENSG00000187098.18	ENST00000687384.1:ENST00000693031.1:ENST00000352241.9:ENST00000461511.1:ENST00000642352.1:ENST00000495741.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	90	2	2.35314	4.12928	5.90542	0.00539714	3.92169e-4	0.066545000000000007	0.0184748
chr7	10616053	10616153	3482940	0	-	0.34	(0.32,0.35]	chr7	325772	541	INTRON	INTRON	MGC4859	ENSG00000283117.1	ENST00000634803.1	lncRNA	lncRNA	lncRNA	lncRNA	1	58	2	2.68921	4.12914	5.56907	0.0230336	2.27532e-4	0.118056	0.0133228
chr6	85571143	85571241	3150709	0	-	0.479592	(0.476,0.515]	chr6	293818	28	INTRON	INTRON	ENSG00000271793:SNX14	ENSG00000271793.2:ENSG00000135317.14	ENST00000682083.1:ENST00000683074.1:ENST00000681965.1:ENST00000682171.1:ENST00000684150.1:ENST00000683785.1:ENST00000682497.1:ENST00000684647.1:ENST00000683643.1:ENST00000682023.1:ENST00000682022.1:ENST00000683542.1:ENST00000683126.1:ENST00000683857.1:ENST00000683898.1:ENST00000682854.1:ENST00000682491.1:ENST00000682174.1:ENST00000684239.1:ENST00000682939.1:ENST00000684570.1:ENST00000682057.1:ENST00000682878.1:ENST00000683880.1:ENST00000684422.1:ENST00000682504.1:ENST00000683726.1:ENST00000684680.1:ENST00000683196.1:ENST00000683458.1:ENST00000683803.1:ENST00000684281.1:ENST00000682991.1:ENST00000683754.1:ENST00000683481.1:ENST00000682455.1:ENST00000682034.1:ENST00000684451.1:ENST00000683583.1:ENST00000682776.1:ENST00000683873.1:ENST00000683878.1:ENST00000683195.1:ENST00000682995.1:ENST00000682374.1:ENST00000683698.1:ENST00000682454.1:ENST00000682694.1:ENST00000682412.1:ENST00000682682.1:ENST00000346348.7:ENST00000314673.8:ENST00000682633.1:ENST00000683085.1:ENST00000682688.1:ENST00000684319.1:ENST00000683577.1:ENST00000682709.1:ENST00000684299.1:ENST00000682133.1:ENST00000682594.1:ENST00000683473.1:ENST00000682106.1:ENST00000683364.1:ENST00000683436.1:ENST00000684220.1:ENST00000683909.1:ENST00000684118.1:ENST00000681981.1:ENST00000682738.1:ENST00000509338.6:ENST00000684717.1:ENST00000682660.1:ENST00000683073.1:ENST00000515216.6:ENST00000684581.1:ENST00000683479.1:ENST00000682464.1:ENST00000684108.1:ENST00000682514.1:ENST00000684017.1:ENST00000684273.1:ENST00000513865.5:ENST00000505648.5:ENST00000508980.5:ENST00000369627.6:ENST00000508658.6:ENST00000683097.1:ENST00000683541.1:ENST00000683759.1:ENST00000369635.7:ENST00000684462.1:ENST00000682168.1:ENST00000513869.2:ENST00000514419.6:ENST00000683999.1:ENST00000503906.1:ENST00000683727.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	49	2	3.35059	4.1291	4.90761	0.00386428	0.00171515	0.0542786	0.0381936
chr8	52712378	52712477	3951088	0	-	0.323232	(0.32,0.35]	chr8	362390	251	INTRON	INTRON	RB1CC1	ENSG00000023287.13	ENST00000025008.10:ENST00000435644.6:ENST00000521611.1:ENST00000518710.5:ENST00000517963.1:ENST00000518211.1:ENST00000518468.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	78	2	2.5652	4.128635	5.69207	0.00765724	1.29349e-4	0.075364	0.00979769
chr11	86060562	86060662	5014758	0	-	0.43	(0.408,0.44]	chr11	473022	286	INTRON	INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000630913.2:ENST00000528398.5:ENST00000356360.9:ENST00000534412.5:ENST00000531558.1:ENST00000531930.5:ENST00000532041.5:ENST00000525162.5:ENST00000528256.1:ENST00000528411.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	92	2	2.68751	4.12862	5.56973	3.87147e-4	3.81714e-4	0.0181283	0.0177751
chr17	2640369	2640466	6547909	0	+	0.206186	[0,0.28]	chr17	635237	12	EXON_MRNA	EXON_MRNA:INTRON	PAFAH1B1:ENSG00000279432	ENSG00000007168.14:ENSG00000279432.1	ENST00000576586.5:ENST00000397195.10:ENST00000676201.1:ENST00000575477.5:ENST00000675621.1:ENST00000676353.1:ENST00000674717.1:ENST00000675202.1:ENST00000675764.1:ENST00000674608.1:ENST00000676077.1:ENST00000676098.1:ENST00000572915.6:ENST00000570400.1:ENST00000675430.1:ENST00000675331.1:ENST00000676188.1:ENST00000574816.5:ENST00000675390.1:ENST00000676456.1:ENST00000622996.1	protein_coding	protein_coding	protein_coding:TEC	protein_coding:retained_intron:nonsense_mediated_decay:TEC:processed_transcript	1	60	2	3.09587	4.128585	5.1613	0.00866441	0.00651565	0.0787025	0.0735232
chr6	111262403	111262425	2939804	0	+	0.181818	[0,0.28]	chr6	276903	1	CDS_START	CDS_START:CDS:EXON_MRNA:INTRON	MFSD4B	ENSG00000173214.7	ENST00000672303.1:ENST00000671876.2:ENST00000672750.1:ENST00000672191.1:ENST00000368847.5:ENST00000672554.1:ENST00000673024.1:ENST00000671883.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	60	2	3.09587	4.128585	5.1613	0.00866441	0.00651565	0.0787025	0.0735232
chr14	88576724	88576819	5802716	0	+	0.378947	(0.378,0.408]	chr14	549709	4	INTRON	INTRON	ZC3H14	ENSG00000100722.20	ENST00000302216.12:ENST00000649731.1:ENST00000556945.5:ENST00000557607.5:ENST00000251038.10:ENST00000555755.5:ENST00000393514.9:ENST00000336693.8:ENST00000556000.5:ENST00000557605.1:ENST00000556110.5:ENST00000557047.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	51	2	3.5186	4.128495	4.73839	0.00837252	8.45009e-4	0.0774402	0.0263813
chr3	195664840	195664931	1593497	0	+	0.406593	(0.378,0.408]	chr3	165028	2	INTRON	INTRON	MUC20-OT1	ENSG00000242086.8	ENST00000457233.5:ENST00000429897.5:ENST00000453324.5:ENST00000445430.5	lncRNA	lncRNA	lncRNA	lncRNA	1	51	2	3.5186	4.128495	4.73839	0.00837252	8.45009e-4	0.0774402	0.0263813
chr12	98595246	98595339	5198999	0	+	0.322581	(0.32,0.35]	chr12	491851	9	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	SLC25A3	ENSG00000075415.15	ENST00000401722.7:ENST00000188376.9:ENST00000551917.5:ENST00000546766.5:ENST00000228318.8:ENST00000552981.6:ENST00000547534.5:ENST00000550695.1:ENST00000551123.5:ENST00000549338.5:ENST00000548847.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	305	2	3.48037	4.12843	4.77649	1.29154e-5	1.87061e-8	0.00285391	4.97375e-5
chr1	112922552	112922633	523803	0	-	0.518519	(0.515,0.57]	chr1	61676	3	SS3_PROX	SS3_PROX:INTRON	SLC16A1	ENSG00000155380.13	ENST00000679803.1:ENST00000369626.8:ENST00000443580.6:ENST00000538576.5:ENST00000429288.2:ENST00000458229.6:ENST00000679846.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	59	2	2.73258	4.128415	5.52425	0.00260192	1.68822e-4	0.0470772	0.0119215
chr1	26707129	26707229	51282	0	+	0.45	(0.44,0.476]	chr1	6542	92	INTRON	INTRON	ARID1A	ENSG00000117713.21	ENST00000430799.7:ENST00000324856.13:ENST00000637465.1:ENST00000457599.6	protein_coding	protein_coding	protein_coding	protein_coding	3	78	2	2.34775	4.12838	5.90901	0.00466011	7.5486e-5	0.0629753	0.00777227
chr7	111298390	111298490	3621466	0	-	0.37	(0.35,0.378]	chr7	337093	3345	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	103	2	2.15696	4.12836	6.09976	0.00672191	1.03844e-5	0.070858	0.00235262
chr1	168250126	168250226	250406	0	+	0.58	(0.57,1]	chr1	29769	77	UTR3	UTR3:EXON_MRNA	SFT2D2	ENSG00000213064.10	ENST00000271375.7	protein_coding	protein_coding	protein_coding	protein_coding	2	60	2	4.05452	4.128315000000001	4.20211	2.28989e-5	9.40529e-6	0.00373083	0.00236268
chr1	51410395	51410495	453252	0	-	0.27	[0,0.28]	chr1	54365	3	INTRON	INTRON	EPS15	ENSG00000085832.17	ENST00000371733.8:ENST00000371730.6:ENST00000493793.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	26	2	3.96122	4.12829	4.29536	0.0617993	0.0590175	0.193423	0.167915
chr1	205108244	205108343	622293	0	-	0.272727	[0,0.28]	chr1	74008	27	INTRON	INTRON	RBBP5	ENSG00000117222.14	ENST00000367164.1:ENST00000264515.11:ENST00000484379.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	26	2	3.96122	4.12829	4.29536	0.0617993	0.0590175	0.193423	0.167915
chr1	226231630	226231727	647064	0	-	0.237113	[0,0.28]	chr1	76673	6	UTR3	UTR3:EXON_MRNA	LIN9	ENSG00000183814.16	ENST00000460719.5:ENST00000366808.6:ENST00000328205.9:ENST00000681046.1	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	3.96122	4.12829	4.29536	0.0617993	0.0590175	0.193423	0.167915
chr11	19130397	19130497	4750217	0	+	0.27	[0,0.28]	chr11	439833	117	INTRON	INTRON	ZDHHC13	ENSG00000177054.14	ENST00000532026.5:ENST00000399351.7:ENST00000525490.5:ENST00000446113.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	26	2	3.96122	4.12829	4.29536	0.0617993	0.0590175	0.193423	0.167915
chr11	71460621	71460721	4822140	0	+	0.26	[0,0.28]	chr11	449721	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NADSYN1	ENSG00000172890.13	ENST00000319023.7:ENST00000529120.5:ENST00000528509.5:ENST00000533769.5:ENST00000524949.5:ENST00000525245.1:ENST00000525200.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	26	2	3.96122	4.12829	4.29536	0.0617993	0.0590175	0.193423	0.167915
chr11	130117223	130117322	4886191	0	+	0.252525	[0,0.28]	chr11	456941	62	INTRON	INTRON	APLP2	ENSG00000084234.18	ENST00000650012.1:ENST00000533616.5:ENST00000534761.5:ENST00000338167.10:ENST00000528499.5:ENST00000529701.1:ENST00000526330.5:ENST00000534001.1:ENST00000527702.5:ENST00000534582.5:ENST00000529235.5:ENST00000533713.5:ENST00000533618.5:ENST00000263574.9:ENST00000345598.9:ENST00000278756.7:ENST00000529483.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	26	2	3.96122	4.12829	4.29536	0.0617993	0.0590175	0.193423	0.167915
chr12	79826043	79826142	5375435	0	-	0.171717	[0,0.28]	chr12	512760	35	INTRON	INTRON	PPP1R12A	ENSG00000058272.19	ENST00000261207.9:ENST00000450142.7:ENST00000437004.6:ENST00000546369.5:ENST00000550107.5:ENST00000547330.5:ENST00000550510.5	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	3.96122	4.12829	4.29536	0.0617993	0.0590175	0.193423	0.167915
chr16	16241380	16241478	6309826	0	+	0.27551	[0,0.28]	chr16	603735	11	INTRON	INTRON	NOMO3	ENSG00000103226.19	ENST00000676846.1:ENST00000399336.9:ENST00000677912.1:ENST00000576589.1:ENST00000677777.1:ENST00000678192.1:ENST00000678393.1:ENST00000678538.1:ENST00000679086.1:ENST00000574894.2:ENST00000678080.1:ENST00000677260.1:ENST00000676550.1:ENST00000263012.10:ENST00000575225.5:ENST00000677781.1:ENST00000677163.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	26	2	3.96122	4.12829	4.29536	0.0617993	0.0590175	0.193423	0.167915
chr17	1367728	1367826	6699283	0	-	0.255102	[0,0.28]	chr17	655546	23	INTRON	INTRON	YWHAE	ENSG00000108953.17	ENST00000264335.13:ENST00000571732.5:ENST00000573026.1:ENST00000573196.5:ENST00000575977.1:ENST00000469398.5:ENST00000486241.1:ENST00000489287.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	26	2	3.96122	4.12829	4.29536	0.0617993	0.0590175	0.193423	0.167915
chr17	36527150	36527250	6759572	0	-	0.14	[0,0.28]	chr17	664571	2	SS5_PROX	SS5_PROX:INTRON	MYO19	ENSG00000278259.5	ENST00000614623.5:ENST00000610992.4:ENST00000621550.4:ENST00000610930.4:ENST00000621344.4:ENST00000620640.4:ENST00000616159.4:ENST00000622055.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	26	2	3.96122	4.12829	4.29536	0.0617993	0.0590175	0.193423	0.167915
chr19	16130576	16130671	7026448	0	+	0.231579	[0,0.28]	chr19	699268	6	INTRON	INTRON	RAB8A	ENSG00000167461.12	ENST00000300935.8:ENST00000586682.1:ENST00000592971.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	26	2	3.96122	4.12829	4.29536	0.0617993	0.0590175	0.193423	0.167915
chr3	63853907	63854007	1723846	0	-	0.21	[0,0.28]	chr3	176282	73	INTRON	INTRON	THOC7	ENSG00000163634.12	ENST00000295899.10:ENST00000469584.5:ENST00000473141.5:ENST00000498422.5:ENST00000464327.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	26	2	3.96122	4.12829	4.29536	0.0617993	0.0590175	0.193423	0.167915
chr4	188740796	188740893	2310390	0	-	0.278351	[0,0.28]	chr4	223557	4	EXON_MRNA	EXON_MRNA	ENSG00000278974	ENSG00000278974.1	ENST00000624757.1	TEC	TEC	TEC	TEC	0	26	2	3.96122	4.12829	4.29536	0.0617993	0.0590175	0.193423	0.167915
chr5	34949874	34949971	2337570	0	+	0.257732	[0,0.28]	chr5	225780	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DNAJC21	ENSG00000168724.17	ENST00000648817.1:ENST00000382021.2:ENST00000642851.1:ENST00000642675.1:ENST00000644357.1:ENST00000642285.1:ENST00000646714.1:ENST00000514237.6:ENST00000512136.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	26	2	3.96122	4.12829	4.29536	0.0617993	0.0590175	0.193423	0.167915
chr7	120952705	120952803	3393373	0	+	0.265306	[0,0.28]	chr7	317599	11	INTRON	INTRON	ING3	ENSG00000071243.16	ENST00000339121.9:ENST00000315870.10:ENST00000427726.5:ENST00000445699.5:ENST00000431467.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	26	2	3.96122	4.12829	4.29536	0.0617993	0.0590175	0.193423	0.167915
chr8	47304016	47304116	3747656	0	+	0.26	[0,0.28]	chr8	348794	96	INTRON	INTRON	SPIDR	ENSG00000164808.17	ENST00000541342.2:ENST00000523814.5:ENST00000518074.5:ENST00000522900.5:ENST00000297423.9:ENST00000521550.5:ENST00000517824.5:ENST00000524126.5:ENST00000524141.5:ENST00000519661.5:ENST00000522222.5:ENST00000522117.5:ENST00000524033.5:ENST00000524006.5:ENST00000521214.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	26	2	3.96122	4.12829	4.29536	0.0617993	0.0590175	0.193423	0.167915
chr8	105671329	105671428	3840779	0	+	0.111111	[0,0.28]	chr8	354084	9	INTRON	INTRON	ZFPM2:ENSG00000254141	ENSG00000169946.14:ENSG00000254141.1	ENST00000407775.7:ENST00000520492.5:ENST00000511341.6:ENST00000517361.1:ENST00000519805.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA:processed_transcript	0	26	2	3.96122	4.12829	4.29536	0.0617993	0.0590175	0.193423	0.167915
chr17	2400908	2401006	6705138	0	-	0.428571	(0.408,0.44]	chr17	656521	3	UTR5	UTR5:EXON_MRNA	MNT	ENSG00000070444.15	ENST00000174618.5:ENST00000575394.1	protein_coding	protein_coding	protein_coding	protein_coding	1	49	2	2.96007	4.128095	5.29612	0.00753901	0.00113523	0.0773151	0.0307488
chr22	19912243	19912342	7556021	0	-	0.414141	(0.408,0.44]	chr22	772527	4	INTRON	INTRON	TXNRD2	ENSG00000184470.21	ENST00000400518.5:ENST00000542719.6:ENST00000494454.5:ENST00000474308.5:ENST00000400525.6:ENST00000400521.7:ENST00000400519.6:ENST00000635155.1:ENST00000491939.6:ENST00000334363.14:ENST00000475995.3:ENST00000484672.5:ENST00000471835.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	49	2	2.96007	4.128095	5.29612	0.00753901	0.00113523	0.0773151	0.0307488
chr16	58626572	58626670	6496353	0	-	0.520408	(0.515,0.57]	chr16	628651	14	INTRON	INTRON	CNOT1	ENSG00000125107.19	ENST00000317147.10:ENST00000569240.5:ENST00000567188.5:ENST00000441024.6:ENST00000565605.5:ENST00000564557.1:ENST00000569916.1:ENST00000569020.5:ENST00000568158.1:ENST00000569263.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	22	2	4.08538	4.1278749999999995	4.17037	0.0253843	0.0139194	0.12011	0.10247
chr17	43128833	43128932	6613320	0	+	0.545455	(0.515,0.57]	chr17	644726	27	INTRON	INTRON	NBR2	ENSG00000198496.12	ENST00000657841.1:ENST00000460115.5:ENST00000356906.7:ENST00000467245.5	lncRNA	lncRNA	lncRNA	lncRNA	0	22	2	4.08538	4.1278749999999995	4.17037	0.0253843	0.0139194	0.12011	0.10247
chr19	314642	314742	7109302	0	-	0.55	(0.515,0.57]	chr19	713786	6	INTRON	INTRON	MIER2	ENSG00000105556.12	ENST00000264819.7	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	4.08538	4.1278749999999995	4.17037	0.0253843	0.0139194	0.12011	0.10247
chr2	190881970	190882069	959492	0	+	0.545455	(0.515,0.57]	chr2	104160	1	INTRON	INTRON	GLS	ENSG00000115419.13	ENST00000320717.8:ENST00000338435.8:ENST00000479552.1:ENST00000496170.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	22	2	4.08538	4.1278749999999995	4.17037	0.0253843	0.0139194	0.12011	0.10247
chr20	3925191	3925291	7227266	0	+	0.53	(0.515,0.57]	chr20	734526	20	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	PANK2	ENSG00000125779.24	ENST00000497424.5:ENST00000316562.9:ENST00000610179.7:ENST00000643504.2:ENST00000619433.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	22	2	4.08538	4.1278749999999995	4.17037	0.0253843	0.0139194	0.12011	0.10247
chr20	47253423	47253523	7348467	0	-	0.57	(0.515,0.57]	chr20	749282	36	INTRON	INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000467200.6:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000468376.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	22	2	4.08538	4.1278749999999995	4.17037	0.0253843	0.0139194	0.12011	0.10247
chr20	50670249	50670349	7355230	0	-	0.54	(0.515,0.57]	chr20	750067	335	INTRON	INTRON	RIPOR3	ENSG00000042062.13	ENST00000327979.8	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	4.08538	4.1278749999999995	4.17037	0.0253843	0.0139194	0.12011	0.10247
chr3	15701535	15701634	1622841	0	-	0.555556	(0.515,0.57]	chr3	167933	49	INTRON	INTRON	ANKRD28	ENSG00000206560.12	ENST00000399451.6:ENST00000624145.3:ENST00000683139.1:ENST00000412318.5:ENST00000497037.5:ENST00000451422.1:ENST00000498524.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	22	2	4.08538	4.1278749999999995	4.17037	0.0253843	0.0139194	0.12011	0.10247
chr3	111544255	111544352	1479553	0	+	0.525773	(0.515,0.57]	chr3	154583	16	INTRON	INTRON	CD96	ENSG00000153283.13	ENST00000438817.6:ENST00000488054.1:ENST00000494798.1:ENST00000352690.9:ENST00000283285.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	22	2	4.08538	4.1278749999999995	4.17037	0.0253843	0.0139194	0.12011	0.10247
chr3	122512564	122512664	1801597	0	-	0.55	(0.515,0.57]	chr3	181034	156	INTRON	INTRON	KPNA1	ENSG00000114030.13	ENST00000344337.11:ENST00000494339.5:ENST00000465882.5:ENST00000482287.5:ENST00000476916.5:ENST00000493510.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	22	2	4.08538	4.1278749999999995	4.17037	0.0253843	0.0139194	0.12011	0.10247
chr3	149057265	149057363	1840697	0	-	0.520408	(0.515,0.57]	chr3	185137	15	INTRON	INTRON	HLTF	ENSG00000071794.16	ENST00000310053.10:ENST00000465259.5:ENST00000392912.6:ENST00000494055.5:ENST00000493881.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	22	2	4.08538	4.1278749999999995	4.17037	0.0253843	0.0139194	0.12011	0.10247
chr3	195250518	195250618	1893986	0	-	0.52	(0.515,0.57]	chr3	189517	27	INTRON	INTRON	XXYLT1	ENSG00000173950.16	ENST00000310380.11:ENST00000494175.1:ENST00000455281.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	22	2	4.08538	4.1278749999999995	4.17037	0.0253843	0.0139194	0.12011	0.10247
chr8	123073831	123073931	3850237	0	+	0.55	(0.515,0.57]	chr8	354654	4	SS5_PROX	SS5_PROX:INTRON	TBC1D31	ENSG00000156787.17	ENST00000520368.5:ENST00000519418.5:ENST00000287380.6:ENST00000522420.5:ENST00000327098.9:ENST00000518099.5:ENST00000521676.5:ENST00000524307.5:ENST00000522276.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	22	2	4.08538	4.1278749999999995	4.17037	0.0253843	0.0139194	0.12011	0.10247
chr9	91800604	91800704	4283768	0	-	0.55	(0.515,0.57]	chr9	393909	244	INTRON	INTRON	ROR2	ENSG00000169071.15	ENST00000375715.5:ENST00000375708.4:ENST00000550066.5:ENST00000495386.5:ENST00000546883.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	22	2	4.08538	4.1278749999999995	4.17037	0.0253843	0.0139194	0.12011	0.10247
chr4	76147022	76147113	2164436	0	-	0.307692	(0.28,0.32]	chr4	213502	3	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	NUP54	ENSG00000138750.16	ENST00000695546.1:ENST00000695547.1:ENST00000695552.1:ENST00000507257.6:ENST00000264883.8:ENST00000515460.6:ENST00000695554.1:ENST00000695553.1:ENST00000695551.1:ENST00000695556.1:ENST00000695549.1:ENST00000695550.1:ENST00000695555.1:ENST00000514987.6:ENST00000502850.5:ENST00000508465.6:ENST00000512151.5:ENST00000504173.1:ENST00000695557.1:ENST00000514307.5:ENST00000508583.6:ENST00000506098.5:ENST00000510884.5:ENST00000513352.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	61	2	3.00395	4.12768	5.25141	0.0101329	0.00125199	0.0850389	0.0328543
chr1	54255985	54256085	462248	0	-	0.54	(0.515,0.57]	chr1	55747	3	SS3_PROX	SS3_PROX:INTRON	SSBP3	ENSG00000157216.16	ENST00000610401.5:ENST00000357475.9:ENST00000371319.8:ENST00000417664.7:ENST00000533946.6:ENST00000326956.12:ENST00000371320.8:ENST00000426150.5:ENST00000420121.5:ENST00000533209.5:ENST00000525990.1:ENST00000528787.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	48	2	2.68833	4.12725	5.56617	0.0184931	5.44229e-5	0.108861	0.00603408
chr7	66707070	66707170	3325138	0	+	0.36	(0.35,0.378]	chr7	309221	215	INTRON	INTRON	RABGEF1	ENSG00000154710.18	ENST00000607882.5	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	2	68	2	2.76192	4.12725	5.49258	0.00265021	8.19894e-4	0.0474328	0.0264086
chr1	211807777	211807876	631178	0	-	0.353535	(0.35,0.378]	chr1	74654	142	INTRON	INTRON	LPGAT1	ENSG00000123684.13	ENST00000366997.9:ENST00000366996.1	protein_coding	protein_coding	protein_coding	protein_coding	2	68	2	2.67874	4.12719	5.57564	0.00373022	5.93654e-4	0.0561984	0.0225024
chr2	8966897	8966997	1063200	0	-	0.3	(0.28,0.32]	chr2	113381	79	INTRON	INTRON	MBOAT2	ENSG00000143797.12	ENST00000305997.8:ENST00000486484.5:ENST00000477073.5:ENST00000462696.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	56	2	3.26551	4.127115	4.98872	0.00838468	0.0030714	0.0774402	0.0509893
chr2	45539931	45540031	1112635	0	-	0.31	(0.28,0.32]	chr2	119293	512	INTRON	INTRON	SRBD1	ENSG00000068784.13	ENST00000263736.5:ENST00000475073.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	56	2	3.26551	4.127115	4.98872	0.00838468	0.0030714	0.0774402	0.0509893
chr17	20874457	20874556	6576123	0	+	0.323232	(0.32,0.35]	chr17	639372	54	INTRON	INTRON	CCDC144NL-AS1	ENSG00000233098.10	ENST00000577537.5:ENST00000692759.1:ENST00000443508.8:ENST00000692309.1:ENST00000439794.6:ENST00000417232.6:ENST00000583962.2:ENST00000582324.5:ENST00000577860.5	lncRNA	lncRNA	lncRNA	lncRNA	2	123	2	4.06294	4.12706	4.19118	1.45551e-4	3.63425e-5	0.0110245	0.00482856
chr20	63884517	63884617	7300882	0	+	0.51	(0.476,0.515]	chr20	743114	13	INTRON	INTRON	TPD52L2	ENSG00000101150.18	ENST00000611972.4:ENST00000615907.4:ENST00000369927.8:ENST00000346249.9:ENST00000348257.9:ENST00000352482.8:ENST00000351424.8:ENST00000217121.9:ENST00000358548.4	protein_coding	protein_coding	protein_coding	protein_coding	2	69	2	2.54157	4.126860000000001	5.71215	0.00697457	5.54639e-5	0.0718189	0.00609037
chr7	76551522	76551622	3340383	0	+	0.27	[0,0.28]	chr7	311168	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ENSG00000205485	ENSG00000205485.13	ENST00000418663.5:ENST00000450661.1:ENST00000423084.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	3	98	2	2.16436	4.126825	6.08929	0.0120935	4.45295e-4	0.0962599	0.0194896
chr6	18257720	18257820	3069180	0	-	0.3	(0.28,0.32]	chr6	285204	13	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	DEK	ENSG00000124795.17	ENST00000652689.1:ENST00000651624.1:ENST00000515770.2:ENST00000651992.1:ENST00000507591.2:ENST00000505224.5:ENST00000244776.11:ENST00000652576.1:ENST00000503715.5:ENST00000515742.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	133	2	3.85599	4.126755	4.39752	4.63052e-4	1.48497e-5	0.0198709	0.00289599
chr1	108305795	108305894	176693	0	+	0.292929	(0.28,0.32]	chr1	19153	211	INTRON	INTRON	SLC25A24P1	ENSG00000241361.8	ENST00000411846.6:ENST00000434803.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	1	56	2	2.86113	4.12674	5.39235	0.0122675	0.0024844	0.0969406	0.0446195
chr13	52295004	52295103	5598529	0	-	0.525253	(0.515,0.57]	chr13	535227	31	INTRON	INTRON	TPTE2P2	ENSG00000272281.6	ENST00000605924.5:ENST00000403471.6	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	1	48	2	3.40388	4.12662	4.84936	0.00146032	0.00142538	0.0349875	0.0340865
chr12	45871325	45871425	5124150	0	+	0.29	(0.28,0.32]	chr12	483381	100	INTRON	INTRON	ARID2	ENSG00000189079.17	ENST00000334344.11:ENST00000422737.6:ENST00000479608.5:ENST00000444670.5:ENST00000457135.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	25	2	4.01002	4.1266099999999994	4.2432	0.0479043	0.0434868	0.162255	0.153019
chr15	63552814	63552914	6042398	0	+	0.29	(0.28,0.32]	chr15	575406	77	INTRON	INTRON	USP3	ENSG00000140455.17	ENST00000540797.5:ENST00000380324.8:ENST00000561442.5:ENST00000560070.5:ENST00000557884.5:ENST00000558157.5:ENST00000561326.5:ENST00000559873.5:ENST00000559192.5:ENST00000559771.5:ENST00000268049.11:ENST00000558285.5:ENST00000559257.5:ENST00000538686.6:ENST00000559711.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	25	2	4.01002	4.1266099999999994	4.2432	0.0479043	0.0434868	0.162255	0.153019
chr16	28201897	28201996	6468365	0	-	0.292929	(0.28,0.32]	chr16	624597	205	INTRON	INTRON	XPO6	ENSG00000169180.12	ENST00000304658.10:ENST00000565698.5:ENST00000569951.1:ENST00000566073.1	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	4.01002	4.1266099999999994	4.2432	0.0479043	0.0434868	0.162255	0.153019
chr17	32756555	32756653	6755892	0	-	0.285714	(0.28,0.32]	chr17	664006	4	INTRON	INTRON	MYO1D	ENSG00000176658.17	ENST00000318217.10:ENST00000394649.8:ENST00000579584.5:ENST00000584232.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	25	2	4.01002	4.1266099999999994	4.2432	0.0479043	0.0434868	0.162255	0.153019
chr19	55062667	55062767	7212302	0	-	0.3	(0.28,0.32]	chr19	732269	3	SS5_PROX	SS5_PROX:INTRON	RDH13	ENSG00000160439.16	ENST00000591960.1:ENST00000415061.8:ENST00000610356.4:ENST00000396247.7:ENST00000291892.10:ENST00000592573.1:ENST00000587721.1:ENST00000589305.5:ENST00000586945.5:ENST00000587026.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	25	2	4.01002	4.1266099999999994	4.2432	0.0479043	0.0434868	0.162255	0.153019
chr2	32197766	32197826	730110	0	+	0.3	(0.28,0.32]	chr2	84205	2	CDS	CDS:UTR3:EXON_MRNA	SLC30A6	ENSG00000152683.14	ENST00000357055.7:ENST00000435660.5:ENST00000282587.9:ENST00000449777.5:ENST00000454324.5:ENST00000379343.6:ENST00000440718.5:ENST00000406369.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	25	2	4.01002	4.1266099999999994	4.2432	0.0479043	0.0434868	0.162255	0.153019
chr2	39281048	39281145	1102704	0	-	0.319588	(0.28,0.32]	chr2	118375	3	INTRON	INTRON	MAP4K3	ENSG00000011566.15	ENST00000263881.8:ENST00000437545.5:ENST00000341681.9	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	4.01002	4.1266099999999994	4.2432	0.0479043	0.0434868	0.162255	0.153019
chr2	108791454	108791554	848158	0	+	0.3	(0.28,0.32]	chr2	94952	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	CCDC138	ENSG00000163006.12	ENST00000412964.6:ENST00000409529.6:ENST00000295124.9:ENST00000470608.1:ENST00000447782.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	25	2	4.01002	4.1266099999999994	4.2432	0.0479043	0.0434868	0.162255	0.153019
chr2	206123287	206123386	1317538	0	-	0.313131	(0.28,0.32]	chr2	138083	86	UTR3	UTR3:EXON_MRNA	NDUFS1	ENSG00000023228.14	ENST00000233190.11:ENST00000455934.6	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	4.01002	4.1266099999999994	4.2432	0.0479043	0.0434868	0.162255	0.153019
chr22	20629612	20629712	7557829	0	-	0.29	(0.28,0.32]	chr22	772926	14	INTRON	INTRON	SMPD4P1	ENSG00000223553.6	ENST00000443839.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	25	2	4.01002	4.1266099999999994	4.2432	0.0479043	0.0434868	0.162255	0.153019
chr3	130921030	130921130	1503187	0	+	0.32	(0.28,0.32]	chr3	157203	259	INTRON	INTRON	ATP2C1	ENSG00000017260.20	ENST00000504381.5:ENST00000505330.5:ENST00000507488.6:ENST00000508532.5:ENST00000533801.6:ENST00000510168.6:ENST00000513801.5:ENST00000504948.5:ENST00000505072.5:ENST00000509662.5:ENST00000328560.12:ENST00000428331.6:ENST00000422190.6:ENST00000359644.7	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	4.01002	4.1266099999999994	4.2432	0.0479043	0.0434868	0.162255	0.153019
chr4	15606795	15606895	2114367	0	-	0.32	(0.28,0.32]	chr4	208817	6	INTRON	INTRON	FBXL5	ENSG00000118564.15	ENST00000341285.8:ENST00000412094.6:ENST00000511441.5:ENST00000513163.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	25	2	4.01002	4.1266099999999994	4.2432	0.0479043	0.0434868	0.162255	0.153019
chr4	26381093	26381192	1937280	0	+	0.313131	(0.28,0.32]	chr4	194383	131	INTRON	INTRON	RBPJ	ENSG00000168214.22	ENST00000512351.5:ENST00000681799.1:ENST00000681403.1:ENST00000342295.6:ENST00000512671.6:ENST00000506956.5:ENST00000345843.8:ENST00000361572.10:ENST00000514380.5:ENST00000514807.5:ENST00000348160.9:ENST00000681506.1:ENST00000509158.6:ENST00000691085.1:ENST00000692303.1:ENST00000681856.1:ENST00000513182.5:ENST00000681025.1:ENST00000681679.1:ENST00000680210.1:ENST00000355476.8:ENST00000680140.1:ENST00000511401.5:ENST00000680511.1:ENST00000510778.7:ENST00000679698.1:ENST00000679469.1:ENST00000681484.1:ENST00000505958.6:ENST00000507561.5:ENST00000514730.5:ENST00000507574.5:ENST00000514675.5:ENST00000515573.5:ENST00000689192.1:ENST00000680928.1:ENST00000681260.1:ENST00000681093.1:ENST00000504423.2:ENST00000511546.5:ENST00000342320.8:ENST00000504907.5:ENST00000511451.5:ENST00000681264.1:ENST00000504938.1:ENST00000680204.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	25	2	4.01002	4.1266099999999994	4.2432	0.0479043	0.0434868	0.162255	0.153019
chr4	80019476	80019575	2170008	0	-	0.30303	(0.28,0.32]	chr4	213885	1	INTRON	INTRON	ANTXR2	ENSG00000163297.18	ENST00000403729.7:ENST00000449651.5:ENST00000679571.1:ENST00000681710.1:ENST00000680913.1:ENST00000681115.1:ENST00000404191.5:ENST00000346652.10:ENST00000307333.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	25	2	4.01002	4.1266099999999994	4.2432	0.0479043	0.0434868	0.162255	0.153019
chr5	6621744	6621844	2566662	0	-	0.3	(0.28,0.32]	chr5	245946	1	SS3_ADJ	SS3_ADJ:SS3_PROX:SS5_PROX:INTRON	NSUN2	ENSG00000037474.15	ENST00000264670.11:ENST00000504374.5:ENST00000506139.5:ENST00000505264.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	25	2	4.01002	4.1266099999999994	4.2432	0.0479043	0.0434868	0.162255	0.153019
chr6	89871888	89871982	2916874	0	+	0.297872	(0.28,0.32]	chr6	275649	1	INTRON	INTRON	CASP8AP2	ENSG00000118412.13	ENST00000237177.10:ENST00000548224.2	protein_coding	processed_transcript	protein_coding	processed_transcript	0	25	2	4.01002	4.1266099999999994	4.2432	0.0479043	0.0434868	0.162255	0.153019
chr6	110781821	110781921	3190121	0	-	0.32	(0.28,0.32]	chr6	297127	75	INTRON	INTRON	CDK19	ENSG00000155111.15	ENST00000323817.7:ENST00000368911.8:ENST00000413605.6:ENST00000457688.5:ENST00000460913.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	25	2	4.01002	4.1266099999999994	4.2432	0.0479043	0.0434868	0.162255	0.153019
chr7	734036	734135	3267920	0	+	0.313131	(0.28,0.32]	chr7	303447	38	INTRON	INTRON	DNAAF5	ENSG00000164818.16	ENST00000297440.11:ENST00000437419.5:ENST00000438961.1:ENST00000440747.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	25	2	4.01002	4.1266099999999994	4.2432	0.0479043	0.0434868	0.162255	0.153019
chr7	107913318	107913417	3379851	0	+	0.30303	(0.28,0.32]	chr7	316609	66	INTRON	INTRON	DLD	ENSG00000091140.15	ENST00000417551.5:ENST00000415325.5:ENST00000440410.5:ENST00000437604.6:ENST00000205402.10:ENST00000451081.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	25	2	4.01002	4.1266099999999994	4.2432	0.0479043	0.0434868	0.162255	0.153019
chr7	156843883	156843983	3687525	0	-	0.3	(0.28,0.32]	chr7	342096	66	INTRON	INTRON	LMBR1	ENSG00000105983.23	ENST00000353442.10:ENST00000415428.5:ENST00000454132.5:ENST00000434503.5:ENST00000430278.5:ENST00000434278.5:ENST00000444719.5:ENST00000461469.5:ENST00000414218.1:ENST00000434453.1:ENST00000498034.5:ENST00000433968.5:ENST00000485985.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	25	2	4.01002	4.1266099999999994	4.2432	0.0479043	0.0434868	0.162255	0.153019
chr8	97653678	97653778	3809154	0	+	0.29	(0.28,0.32]	chr8	352836	84	INTRON	INTRON	MTDH	ENSG00000147649.10	ENST00000336273.8:ENST00000519934.5:ENST00000522313.1	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	4.01002	4.1266099999999994	4.2432	0.0479043	0.0434868	0.162255	0.153019
chr8	103044198	103044297	3821749	0	+	0.292929	(0.28,0.32]	chr8	353611	14	INTRON	INTRON	ATP6V1C1	ENSG00000155097.12	ENST00000395862.7:ENST00000518857.5:ENST00000518738.2:ENST00000521514.5	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	4.01002	4.1266099999999994	4.2432	0.0479043	0.0434868	0.162255	0.153019
chr9	40094659	40094759	4258999	0	-	0.31	(0.28,0.32]	chr9	391902	1037	INTRON	INTRON	ENSG00000284116	ENSG00000284116.1	ENST00000639363.1	lncRNA	lncRNA	lncRNA	lncRNA	0	25	2	4.01002	4.1266099999999994	4.2432	0.0479043	0.0434868	0.162255	0.153019
chr6	4134714	4134814	3048375	0	-	0.33	(0.32,0.35]	chr6	283725	2	SS5_PROX	SS5_PROX:INTRON	ECI2	ENSG00000198721.13	ENST00000380125.6:ENST00000496241.6:ENST00000380120.6:ENST00000361538.6:ENST00000380118.8:ENST00000464057.5:ENST00000478266.6:ENST00000465828.5:ENST00000495548.1:ENST00000489086.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	71	2	2.58753	4.126595	5.66566	0.00560122	6.06695e-4	0.0678837	0.0226059
chr15	72546850	72546949	6059888	0	+	0.474747	(0.44,0.476]	chr15	576870	15	INTRON	INTRON	ARIH1	ENSG00000166233.15	ENST00000379887.9:ENST00000570085.5:ENST00000564062.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	52	2	3.12799	4.1265600000000004	5.12513	0.0050635	7.96486e-4	0.0621733	0.0258804
chr9	78327052	78327152	4148223	0	+	0.46	(0.44,0.476]	chr9	378290	89	INTRON	INTRON	PSAT1	ENSG00000135069.14	ENST00000376588.4:ENST00000347159.6	protein_coding	protein_coding	protein_coding	protein_coding	1	54	2	2.5364	4.126505	5.71661	0.0309324	5.13947e-5	0.13151	0.00585477
chr8	22493104	22493204	3713841	0	+	0.29	(0.28,0.32]	chr8	344885	171	INTRON	INTRON	PPP3CC	ENSG00000120910.15	ENST00000518852.5:ENST00000240139.10:ENST00000289963.12:ENST00000397775.7:ENST00000522034.5	protein_coding	protein_coding	protein_coding	protein_coding	3	178	2	3.81792	4.1264400000000006	4.43496	3.25885e-5	1.68118e-5	0.00481614	0.00310245
chr1	55176843	55176943	465518	0	-	0.52	(0.515,0.57]	chr1	56283	4	SS3_PROX	SS3_PROX:INTRON	USP24	ENSG00000162402.14	ENST00000294383.7	protein_coding	protein_coding	protein_coding	protein_coding	1	47	2	2.83501	4.12628	5.41755	0.0117686	1.1703e-4	0.0894475	0.00929802
chr19	15319038	15319138	7147271	0	-	0.53	(0.515,0.57]	chr19	721965	387	INTRON	INTRON	BRD4	ENSG00000141867.19	ENST00000679869.1:ENST00000360016.9:ENST00000594841.5:ENST00000597315.5:ENST00000601941.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	47	2	2.83501	4.12628	5.41755	0.0117686	1.1703e-4	0.0894475	0.00929802
chr3	129174650	129174749	1815237	0	-	0.343434	(0.32,0.35]	chr3	182484	25	INTRON	INTRON	CNBP	ENSG00000169714.17	ENST00000422453.7:ENST00000502976.5:ENST00000451728.6:ENST00000446936.6:ENST00000504813.5:ENST00000500450.6:ENST00000441626.6:ENST00000502372.1:ENST00000512338.1:ENST00000507573.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	53	2	2.96746	4.12598	5.2845	0.00815799	0.00240071	0.0810802	0.0440612
chr11	68568752	68568851	4818432	0	+	0.434343	(0.408,0.44]	chr11	448989	12	INTRON	INTRON	PPP6R3	ENSG00000110075.15	ENST00000534534.5:ENST00000524845.5:ENST00000393800.7:ENST00000265637.8:ENST00000524904.5:ENST00000393801.7:ENST00000265636.9:ENST00000529710.5:ENST00000527403.6:ENST00000534190.5:ENST00000526574.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	78	2	2.64127	4.125975	5.61068	0.00125199	3.21002e-4	0.0328543	0.0165409
chr19	328685	328783	7109451	0	-	0.428571	(0.408,0.44]	chr19	713809	3	INTRON	INTRON	MIER2	ENSG00000105556.12	ENST00000264819.7:ENST00000635755.1:ENST00000586994.7:ENST00000621180.4:ENST00000592722.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	79	2	2.76768	4.12592	5.48416	6.71664e-4	5.43528e-4	0.0235155	0.0215026
chr10	116904836	116904936	4699482	0	-	0.46	(0.44,0.476]	chr10	433616	25	INTRON	INTRON	SHTN1	ENSG00000187164.20	ENST00000355371.9:ENST00000615301.4:ENST00000260777.14:ENST00000497044.5:ENST00000392901.10:ENST00000392903.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	66	2	2.44514	4.125805	5.80647	0.0087381	1.22335e-4	0.0845538	0.00993581
chr12	46197462	46197548	5315791	0	-	0.476744	(0.476,0.515]	chr12	505662	2	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	SLC38A1	ENSG00000111371.16	ENST00000398637.10:ENST00000439706.5:ENST00000549049.5:ENST00000546893.5:ENST00000552197.5:ENST00000612161.4:ENST00000548979.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	65	2	2.89165	4.1258	5.35995	0.00142068	7.54256e-4	0.034662	0.0251179
chr10	86474672	86474772	4658891	0	-	0.36	(0.35,0.378]	chr10	429282	3	INTRON	INTRON	WAPL	ENSG00000062650.20	ENST00000298767.10	protein_coding	protein_coding	protein_coding	protein_coding	2	68	2	2.80179	4.12549	5.44919	0.00223906	9.66659e-4	0.0435144	0.0282401
chr4	99037366	99037466	2003135	0	+	0.24	[0,0.28]	chr4	199842	2	SS3_PROX	SS3_PROX:INTRON	METAP1	ENSG00000164024.12	ENST00000510209.5:ENST00000296411.11:ENST00000507537.5:ENST00000506238.5:ENST00000503247.5:ENST00000510107.5:ENST00000513199.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	101	2	2.69731	4.1254349999999995	5.55356	0.00278704	0.00153564	0.0469265	0.0362144
chr1	171500289	171500388	253362	0	+	0.323232	(0.32,0.35]	chr1	30096	142	INTRON	INTRON	PRRC2C	ENSG00000117523.18	ENST00000647382.2:ENST00000367742.7:ENST00000476522.5:ENST00000338920.8:ENST00000467601.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	62	2	2.30673	4.12529	5.94385	0.0584434	3.75519e-5	0.167723	0.00490694
chr11	119050634	119050734	5046616	0	-	0.4	(0.378,0.408]	chr11	475928	2	SS5_PROX	SS5_PROX:INTRON	HYOU1	ENSG00000149428.21	ENST00000617285.5:ENST00000612687.4:ENST00000614711.5:ENST00000694930.1:ENST00000694929.1:ENST00000534233.6:ENST00000530473.6:ENST00000533381.6:ENST00000532519.7:ENST00000652093.1:ENST00000694933.1:ENST00000694934.1:ENST00000694935.1:ENST00000694932.1:ENST00000694937.1:ENST00000621959.4:ENST00000543287.5:ENST00000532421.6:ENST00000527038.7:ENST00000610597.2:ENST00000530467.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	69	2	3.18608	4.1251	5.06412	0.0030522	3.50013e-4	0.0493883	0.0166791
chr6	36597375	36597468	2854445	0	+	0.354839	(0.35,0.378]	chr6	269777	3	SS5_PROX	SS5_PROX:INTRON	SRSF3	ENSG00000112081.17	ENST00000613941.4:ENST00000373715.11:ENST00000339436.11:ENST00000477442.6:ENST00000620941.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	131	2	2.65129	4.12488	5.59847	4.34016e-4	1.39739e-4	0.0191074	0.0101825
chr4	78840584	78840684	1982031	0	+	0.23	[0,0.28]	chr4	198479	65	INTRON	INTRON	BMP2K	ENSG00000138756.19	ENST00000389010.7:ENST00000502613.3:ENST00000502871.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	60	2	3.13926	4.124795000000001	5.11033	0.00991388	0.00563224	0.0838372	0.0678837
chr5	62571126	62571225	2364625	0	+	0.272727	[0,0.28]	chr5	228011	95	INTRON	INTRON	IPO11	ENSG00000086200.17	ENST00000424533.5:ENST00000325324.11:ENST00000409296.7:ENST00000511713.5:ENST00000511133.1:ENST00000413749.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	67	2	3.04867	4.12469	5.20071	0.0104221	0.00261806	0.085482	0.0470772
chr5	139315216	139315312	2499600	0	+	0.4375	(0.408,0.44]	chr5	238925	6	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MATR3	ENSG00000280987.4:ENSG00000015479.20	ENST00000509990.5:ENST00000506147.5:ENST00000512107.5:ENST00000361059.7:ENST00000394800.6:ENST00000502929.5:ENST00000504203.5:ENST00000509644.5:ENST00000512876.5:ENST00000513678.5:ENST00000504045.5:ENST00000504311.5:ENST00000502499.5:ENST00000510056.5:ENST00000511249.5:ENST00000394805.8:ENST00000509918.5:ENST00000503811.5:ENST00000511978.5:ENST00000618441.5:ENST00000514528.5:ENST00000504643.5:ENST00000515833.2:ENST00000505625.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	70	2	2.49218	4.1246149999999995	5.75705	0.00855168	4.13252e-5	0.0780217	0.00519938
chr1	28564402	28564502	57665	0	+	0.44	(0.408,0.44]	chr1	7479	3	SS3_PROX	SS3_PROX:INTRON	TRNAU1AP	ENSG00000180098.9	ENST00000373830.4:ENST00000495995.5:ENST00000480930.5:ENST00000491577.5:ENST00000495215.5:ENST00000464093.1:ENST00000484775.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	52	2	2.89795	4.124409999999999	5.35087	0.0110735	3.00323e-4	0.0873897	0.0155054
chr2	45585107	45585207	1113097	0	-	0.41	(0.408,0.44]	chr2	119356	1	SS5_PROX	SS5_PROX:INTRON	SRBD1	ENSG00000068784.13	ENST00000263736.5	protein_coding	protein_coding	protein_coding	protein_coding	1	52	2	3.00595	4.12431	5.24267	0.00781452	4.83767e-4	0.0759016	0.0199261
chr2	169841047	169841147	908279	0	+	0.42	(0.408,0.44]	chr2	100222	126	INTRON	INTRON	UBR3	ENSG00000144357.18	ENST00000272793.11	protein_coding	protein_coding	protein_coding	protein_coding	1	52	2	3.00595	4.12431	5.24267	0.00781452	4.83767e-4	0.0759016	0.0199261
chr5	65556135	65556234	2634224	0	-	0.282828	(0.28,0.32]	chr5	250195	8	INTRON	INTRON	CENPK	ENSG00000123219.13	ENST00000514814.5:ENST00000396679.6:ENST00000508421.5:ENST00000510693.5:ENST00000506282.6:ENST00000505960.5:ENST00000515497.5:ENST00000515873.5:ENST00000510768.5:ENST00000510354.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	90	2	2.50602	4.12418	5.7423400000000004	0.00290205	7.31742e-4	0.0494641	0.0248722
chr20	17982083	17982183	7243345	0	+	0.4	(0.378,0.408]	chr20	735422	58	INTRON	INTRON	MGME1	ENSG00000125871.14	ENST00000377710.10:ENST00000377709.1:ENST00000377704.4:ENST00000463219.1:ENST00000467391.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	111	2	4.09346	4.124145	4.15483	6.54278e-5	4.66745e-5	0.00715707	0.00555772
chr7	64350444	64350544	3319809	0	+	0.36	(0.35,0.378]	chr7	308641	14	UTR3	UTR3:EXON_MRNA	ZNF736	ENSG00000234444.10	ENST00000423484.3	protein_coding	protein_coding	protein_coding	protein_coding	2	69	2	2.98607	4.12366	5.26125	0.00191117	9.86191e-4	0.03947	0.0288537
chr2	61394252	61394352	1129782	0	-	0.35	(0.32,0.35]	chr2	121474	106	INTRON	INTRON	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000453133.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	54	2	2.78073	4.123575000000001	5.46642	0.01481	0.00127669	0.106702	0.0326395
chr3	44443779	44443879	1676380	0	-	0.34	(0.32,0.35]	chr3	171106	122	UTR3	UTR3:EXON_MRNA	ZNF445	ENSG00000185219.18	ENST00000396077.8:ENST00000425708.6	protein_coding	protein_coding	protein_coding	protein_coding	1	54	2	2.78073	4.123575000000001	5.46642	0.01481	0.00127669	0.106702	0.0326395
chr17	63808159	63808239	6661316	0	+	0.3625	(0.35,0.378]	chr17	649997	3	SS5_PROX	SS5_PROX:INTRON	DDX42	ENSG00000198231.14	ENST00000578681.5:ENST00000583590.5:ENST00000389924.7:ENST00000359353.9:ENST00000577940.6:ENST00000584010.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	52	2	3.45621	4.1235	4.79079	0.00846427	0.0011842	0.0776969	0.031662
chr6	149326788	149326888	2994803	0	+	0.37	(0.35,0.378]	chr6	280212	50	INTRON	INTRON	TAB2	ENSG00000055208.19	ENST00000606202.1:ENST00000636456.1:ENST00000637181.2:ENST00000461481.5:ENST00000367456.5:ENST00000606797.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	52	2	3.45621	4.1235	4.79079	0.00846427	0.0011842	0.0776969	0.031662
chr2	241306915	241307015	1348482	0	-	0.4	(0.378,0.408]	chr2	141652	43	INTRON	INTRON	HDLBP	ENSG00000115677.18	ENST00000310931.10:ENST00000391976.6:ENST00000428482.5:ENST00000441124.5:ENST00000413241.5:ENST00000423693.5:ENST00000425989.5:ENST00000420451.5:ENST00000417540.5:ENST00000462130.1:ENST00000496569.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	56	2	2.46373	4.123455	5.78318	0.0382831	4.21479e-5	0.141795	0.0052571
chr6	111266074	111266168	2939846	0	+	0.340426	(0.32,0.35]	chr6	276921	2	CDS	CDS:UTR3:EXON_MRNA	MFSD4B	ENSG00000173214.7	ENST00000672303.1:ENST00000671876.2:ENST00000672750.1:ENST00000672191.1:ENST00000368847.5:ENST00000672554.1:ENST00000673024.1:ENST00000671883.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	71	2	2.82385	4.12345	5.42305	0.00217392	0.00149027	0.043502	0.035
chr5	98911180	98911279	2683896	0	-	0.40404	(0.378,0.408]	chr5	253957	57	INTRON	INTRON	CHD1	ENSG00000153922.11	ENST00000614616.5:ENST00000284049.7	protein_coding	protein_coding	protein_coding	protein_coding	4	92	2	2.57351	4.123445	5.67338	7.32287e-4	3.05145e-4	0.0246502	0.0161236
chr13	102801037	102801136	5532884	0	+	0.363636	(0.35,0.378]	chr13	528824	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	BIVM	ENSG00000134897.14	ENST00000257336.6:ENST00000651008.1:ENST00000651949.1:ENST00000652006.1:ENST00000651855.1:ENST00000651048.1:ENST00000448849.3:ENST00000652766.1:ENST00000652643.1:ENST00000651228.1:ENST00000651808.1:ENST00000491929.1:ENST00000474443.2:ENST00000652084.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	69	2	2.44701	4.12324	5.79947	0.00900997	2.36402e-4	0.0851009	0.0140941
chr9	133347513	133347601	4370221	0	-	0.534091	(0.515,0.57]	chr9	402124	5	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	MED22	ENSG00000148297.16	ENST00000343730.10:ENST00000610672.4:ENST00000610888.4:ENST00000614493.4:ENST00000471524.1:ENST00000371999.5:ENST00000446777.5:ENST00000494177.6:ENST00000457204.2:ENST00000482295.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	97	2	2.34569	4.123235	5.90078	0.0012338	8.21951e-6	0.0322271	0.00206883
chr1	219198542	219198617	318626	0	+	0.226667	[0,0.28]	chr1	36458	1	EXON_LNCRNA	EXON_LNCRNA:INTRON	LYPLAL1	ENSG00000143353.12	ENST00000460522.5:ENST00000366927.3:ENST00000366928.10:ENST00000477938.5:ENST00000463964.5:ENST00000483635.5:ENST00000474379.5:ENST00000469590.5:ENST00000478794.5:ENST00000475724.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	61	2	3.30083	4.12322	4.94561	0.0150263	0.00319246	0.0994339	0.0520345
chr4	108651030	108651123	2018396	0	+	0.419355	(0.408,0.44]	chr4	200717	1	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	OSTC	ENSG00000198856.13	ENST00000613215.4:ENST00000361564.9:ENST00000510556.1:ENST00000505745.1:ENST00000512478.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	66	2	2.44674	4.123184999999999	5.79963	0.00868283	1.39468e-4	0.0842798	0.0107072
chr7	149552326	149552419	3671897	0	-	0.365591	(0.35,0.378]	chr7	340817	1	SS5_PROX	SS5_PROX:INTRON	ZNF767P	ENSG00000133624.14	ENST00000463567.5:ENST00000472212.5:ENST00000684939.1:ENST00000690388.1:ENST00000486492.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	1	55	2	2.78212	4.12303	5.46394	0.0168532	2.60035e-4	0.103549	0.014326
chr1	26278429	26278523	49943	0	+	0.56383	(0.515,0.57]	chr1	6267	13	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	CEP85	ENSG00000130695.16	ENST00000451429.8:ENST00000252992.8:ENST00000453146.1:ENST00000469609.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	123	2	3.70598	4.122845	4.53971	1.95822e-5	1.89301e-6	0.00358497	8.35956e-4
chr10	72738764	72738864	4450561	0	+	0.44	(0.408,0.44]	chr10	410760	18	INTRON	INTRON	MCU	ENSG00000156026.15	ENST00000373053.8:ENST00000357157.10:ENST00000604679.5:ENST00000604372.5:ENST00000603649.5:ENST00000605597.5:ENST00000536019.5:ENST00000604152.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	70	2	2.6117	4.12282	5.63394	0.00555224	7.78928e-5	0.0648867	0.00735438
chr21	39275972	39276072	7465157	0	-	0.36	(0.35,0.378]	chr21	760525	4	SS5_PROX	SS5_PROX:INTRON	BRWD1	ENSG00000185658.14	ENST00000333229.6:ENST00000342449.8:ENST00000380800.7:ENST00000430093.5:ENST00000445245.5:ENST00000445668.5:ENST00000412604.1:ENST00000455867.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	74	2	2.4475	4.12279	5.79808	0.0106974	5.23926e-5	0.0862205	0.00590498
chr12	48659368	48659468	5319033	0	-	0.44	(0.408,0.44]	chr12	506325	8	INTRON	INTRON	KANSL2	ENSG00000139620.13	ENST00000420613.7:ENST00000548147.5:ENST00000550347.5:ENST00000546701.5:ENST00000548701.5:ENST00000547087.5:ENST00000549574.5:ENST00000553086.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	97	2	2.23639	4.1227149999999995	6.00904	0.00445002	1.03233e-5	0.0592079	0.00235018
chr12	132855237	132855328	5450510	0	-	0.373626	(0.35,0.378]	chr12	522182	3	INTRON	INTRON	CHFR	ENSG00000072609.18	ENST00000450056.7:ENST00000266880.11:ENST00000443047.6:ENST00000315585.11:ENST00000432561.6:ENST00000535527.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	68	2	2.84057	4.12251	5.40445	0.00189462	0.00114224	0.0402736	0.0307966
chr1	144022648	144022748	209333	0	+	0.56	(0.515,0.57]	chr1	22861	471	INTRON	INTRON	SRGAP2D	ENSG00000270872.2	ENST00000605551.2	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	0	22	2	4.04086	4.122335	4.20381	0.0197045	0.0189208	0.120063	0.108861
chr11	134244739	134244838	4886775	0	+	0.555556	(0.515,0.57]	chr11	457070	10	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	VPS26B	ENSG00000151502.11	ENST00000281187.10:ENST00000525095.2:ENST00000531741.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	22	2	4.04086	4.122335	4.20381	0.0197045	0.0189208	0.120063	0.108861
chr11	134333835	134333934	4886966	0	+	0.525253	(0.515,0.57]	chr11	457131	13	INTRON	INTRON	GLB1L2	ENSG00000149328.15	ENST00000339772.9:ENST00000535456.7	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	4.04086	4.122335	4.20381	0.0197045	0.0189208	0.120063	0.108861
chr12	93700566	93700666	5190131	0	+	0.53	(0.515,0.57]	chr12	490910	211	INTRON	INTRON	CRADD	ENSG00000169372.13	ENST00000332896.8:ENST00000549615.5:ENST00000552983.5:ENST00000552033.5:ENST00000551065.5:ENST00000548483.5:ENST00000542893.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	22	2	4.04086	4.122335	4.20381	0.0197045	0.0189208	0.120063	0.108861
chr12	121941434	121941534	5238718	0	+	0.52	(0.515,0.57]	chr12	497332	67	INTRON	INTRON	CFAP251	ENSG00000158023.10	ENST00000288912.9:ENST00000397454.2:ENST00000546044.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	22	2	4.04086	4.122335	4.20381	0.0197045	0.0189208	0.120063	0.108861
chr15	72547444	72547543	6059894	0	+	0.535354	(0.515,0.57]	chr15	576870	21	INTRON	INTRON	ARIH1	ENSG00000166233.15	ENST00000379887.9:ENST00000570085.5:ENST00000564062.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	22	2	4.04086	4.122335	4.20381	0.0197045	0.0189208	0.120063	0.108861
chr2	105858981	105859080	844834	0	+	0.535354	(0.515,0.57]	chr2	94516	33	INTRON	INTRON	NCK2	ENSG00000071051.14	ENST00000233154.9:ENST00000451463.6:ENST00000393348.6:ENST00000522586.5:ENST00000425756.1:ENST00000393349.2	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	4.04086	4.122335	4.20381	0.0197045	0.0189208	0.120063	0.108861
chr20	49655268	49655367	7353041	0	-	0.545455	(0.515,0.57]	chr20	749840	78	INTRON	INTRON	B4GALT5	ENSG00000158470.5	ENST00000371711.4	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	4.04086	4.122335	4.20381	0.0197045	0.0189208	0.120063	0.108861
chr21	44127448	44127544	7416229	0	+	0.5625	(0.515,0.57]	chr21	755993	6	EXON_MRNA	EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PWP2	ENSG00000241945.8	ENST00000291576.12:ENST00000471490.1:ENST00000494310.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	22	2	4.04086	4.122335	4.20381	0.0197045	0.0189208	0.120063	0.108861
chr3	33712912	33713012	1653958	0	-	0.57	(0.515,0.57]	chr3	169693	156	INTRON	INTRON	CLASP2	ENSG00000163539.18	ENST00000399362.8:ENST00000682230.1:ENST00000468888.6:ENST00000359576.9:ENST00000467956.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	22	2	4.04086	4.122335	4.20381	0.0197045	0.0189208	0.120063	0.108861
chr5	171890269	171890369	2771568	0	-	0.53	(0.515,0.57]	chr5	260913	118	INTRON	INTRON	FBXW11	ENSG00000072803.18	ENST00000296933.10:ENST00000517395.6:ENST00000265094.9:ENST00000393802.6:ENST00000523843.5:ENST00000522891.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	22	2	4.04086	4.122335	4.20381	0.0197045	0.0189208	0.120063	0.108861
chr7	43729128	43729228	3526375	0	-	0.54	(0.515,0.57]	chr7	328786	3	SS5_PROX	SS5_PROX:INTRON	COA1	ENSG00000106603.20	ENST00000415076.6:ENST00000446330.6:ENST00000446564.5:ENST00000438444.5:ENST00000223336.11:ENST00000310564.10:ENST00000415798.5:ENST00000431651.5:ENST00000451651.5:ENST00000418140.5:ENST00000448704.5:ENST00000470156.1:ENST00000457939.1:ENST00000420441.1:ENST00000478504.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	22	2	4.04086	4.122335	4.20381	0.0197045	0.0189208	0.120063	0.108861
chr7	129625887	129625986	3412263	0	+	0.565657	(0.515,0.57]	chr7	319009	137	INTRON	INTRON	NRF1	ENSG00000106459.15	ENST00000393232.6:ENST00000477428.5:ENST00000454688.5:ENST00000223190.8:ENST00000311967.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	22	2	4.04086	4.122335	4.20381	0.0197045	0.0189208	0.120063	0.108861
chr9	126832609	126832701	4199628	0	+	0.521739	(0.515,0.57]	chr9	383328	1	CDS	CDS:EXON_MRNA	ZBTB43	ENSG00000169155.10	ENST00000449886.5:ENST00000450858.1:ENST00000373464.5:ENST00000373457.1	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	4.04086	4.122335	4.20381	0.0197045	0.0189208	0.120063	0.108861
chr9	128087166	128087266	4202621	0	+	0.54	(0.515,0.57]	chr9	383913	182	INTRON	INTRON	SLC25A25	ENSG00000148339.13	ENST00000373068.6:ENST00000373069.10	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	4.04086	4.122335	4.20381	0.0197045	0.0189208	0.120063	0.108861
chr10	133463418	133463516	4540609	0	+	0.418367	(0.408,0.44]	chr10	419129	29	INTRON	INTRON	SCART1	ENSG00000214279.13	ENST00000482993.6:ENST00000463137.5:ENST00000640237.1:ENST00000488261.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	53	2	2.6542	4.122325	5.59045	0.0227514	9.6776e-5	0.117618	0.00826486
chr8	73801070	73801170	3971478	0	-	0.21	[0,0.28]	chr8	364222	40	INTRON	INTRON	ENSG00000258677:UBE2W	ENSG00000258677.2:ENSG00000104343.21	ENST00000358757.5:ENST00000523278.5:ENST00000602593.6:ENST00000517608.5:ENST00000650817.1:ENST00000422906.6:ENST00000419880.7:ENST00000651945.1:ENST00000519277.5:ENST00000519255.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	68	2	3.15102	4.1219149999999996	5.09281	0.00767596	0.00372534	0.0753665	0.0561984
chr6	17690913	17691013	3066054	0	-	0.45	(0.44,0.476]	chr6	284872	19	INTRON	INTRON	NUP153	ENSG00000124789.12	ENST00000613258.4:ENST00000537253.5:ENST00000262077.3	protein_coding	protein_coding	protein_coding	protein_coding	1	49	2	3.41176	4.1218900000000005	4.83202	0.00525002	0.00130987	0.0633615	0.0333932
chr14	100367126	100367220	5968812	0	-	0.329787	(0.32,0.35]	chr14	567112	7	INTRON	INTRON	WARS1	ENSG00000140105.18	ENST00000392882.7:ENST00000358655.8:ENST00000355338.6:ENST00000344102.9:ENST00000557135.5:ENST00000556645.5:ENST00000553395.5:ENST00000556504.5:ENST00000557722.5:ENST00000557297.5:ENST00000556435.5:ENST00000553808.5:ENST00000554331.5:ENST00000555063.5:ENST00000556338.5:ENST00000557239.5:ENST00000556698.5:ENST00000553524.5:ENST00000555410.5:ENST00000556579.5:ENST00000554772.5:ENST00000556660.5:ENST00000556783.5:ENST00000553413.5:ENST00000557094.5:ENST00000553769.6:ENST00000553545.5:ENST00000554820.5:ENST00000557347.5:ENST00000554509.5:ENST00000556209.5:ENST00000554605.5:ENST00000555813.5:ENST00000556695.5:ENST00000556295.5:ENST00000555031.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	110	2	2.95921	4.121855	5.2845	0.00240071	1.09781e-4	0.0440612	0.0088711
chrX	123907980	123908080	7716671	0	+	0.29	(0.28,0.32]	chrX	789440	9	UTR3	UTR3:EXON_MRNA	XIAP	ENSG00000101966.13	ENST00000434753.7:ENST00000371199.8:ENST00000355640.3	protein_coding	protein_coding	protein_coding	protein_coding	3	99	2	2.14942	4.1217749999999995	6.09413	0.0143412	3.04445e-5	0.0966737	0.00440486
chr7	152154835	152154933	3678409	0	-	0.387755	(0.378,0.408]	chr7	341402	5	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	KMT2C	ENSG00000055609.21	ENST00000360104.8:ENST00000262189.11:ENST00000418061.2:ENST00000680877.1:ENST00000424877.6:ENST00000679560.1:ENST00000682040.1:ENST00000683120.1:ENST00000681923.1:ENST00000679393.1:ENST00000683200.1:ENST00000680029.1:ENST00000683337.1:ENST00000683178.1:ENST00000683502.1:ENST00000684261.1:ENST00000682283.1:ENST00000473186.5:ENST00000684649.1:ENST00000679882.1:ENST00000684069.1:ENST00000485241.2:ENST00000684330.1:ENST00000683886.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	120	2	1.77299	4.121765	6.47054	0.0129546	7.48237e-7	0.0931124	4.86019e-4
chr7	151096331	151096430	3448450	0	+	0.525253	(0.515,0.57]	chr7	322165	54	INTRON	INTRON	AGAP3	ENSG00000133612.19	ENST00000490097.5:ENST00000463381.5:ENST00000397238.7:ENST00000622464.4:ENST00000479901.5:ENST00000473312.5:ENST00000469901.5:ENST00000476375.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	62	2	2.67733	4.12175	5.56617	0.00366712	5.44229e-5	0.0535094	0.00603408
chr4	138211589	138211689	2245520	0	-	0.31	(0.28,0.32]	chr4	219484	260	INTRON	INTRON	SLC7A11	ENSG00000151012.13	ENST00000280612.9:ENST00000509248.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	58	2	3.50836	4.12155	4.73474	0.0162835	0.00117393	0.101453	0.0316446
chr17	46116171	46116271	6784096	0	-	0.42	(0.408,0.44]	chr17	669208	211	INTRON	INTRON	KANSL1	ENSG00000120071.15	ENST00000574590.6:ENST00000572904.6:ENST00000432791.7:ENST00000575318.6:ENST00000638275.1:ENST00000262419.10:ENST00000648792.1:ENST00000639531.1:ENST00000639150.1:ENST00000639853.1:ENST00000571698.2:ENST00000639375.1:ENST00000577114.2:ENST00000638269.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	52	2	2.84077	4.121425	5.40208	0.0132196	2.37882e-4	0.0940535	0.0136195
chr11	5332383	5332482	4896536	0	-	0.444444	(0.44,0.476]	chr11	459162	41	INTRON	INTRON	HBG2:ENSG00000239920:HBE1:OR51B5	ENSG00000196565.15:ENSG00000239920.2:ENSG00000213931.7:ENSG00000167355.8	ENST00000380252.6:ENST00000380259.7:ENST00000643199.1:ENST00000292896.3:ENST00000380237.5:ENST00000420726.6:ENST00000420465.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	49	2	2.89047	4.12137	5.35227	0.00955699	8.47974e-4	0.0863913	0.0267232
chr12	125028770	125028869	5245422	0	+	0.474747	(0.44,0.476]	chr12	498729	34	UTR3	UTR3:EXON_MRNA	BRI3BP	ENSG00000184992.13	ENST00000341446.9:ENST00000671775.2	protein_coding	protein_coding	protein_coding	protein_coding	1	49	2	2.89047	4.12137	5.35227	0.00955699	8.47974e-4	0.0863913	0.0267232
chr4	110182859	110182959	2227577	0	-	0.42	(0.408,0.44]	chr4	218024	769	INTRON	INTRON	ELOVL6	ENSG00000170522.10	ENST00000394607.7:ENST00000302274.8:ENST00000514184.5:ENST00000506625.5:ENST00000506461.1:ENST00000503885.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	52	2	3.05705	4.121205	5.18536	0.00658331	6.17381e-4	0.0701901	0.0223951
chr2	127756337	127756437	1225326	0	-	0.28	[0,0.28]	chr2	130486	179	INTRON	INTRON	WDR33	ENSG00000136709.12	ENST00000322313.9:ENST00000436787.5:ENST00000393006.5	protein_coding	protein_coding	protein_coding	protein_coding	2	81	2	2.41169	4.121090000000001	5.83049	0.0122872	0.00112548	0.0970106	0.0306963
chr1	10374753	10374853	22365	0	+	0.36	(0.35,0.378]	chr1	2340	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	KIF1B	ENSG00000054523.20	ENST00000676179.1:ENST00000263934.10:ENST00000696502.1:ENST00000696503.1:ENST00000696504.1:ENST00000377086.5:ENST00000377081.5:ENST00000620295.2:ENST00000622724.3:ENST00000635499.1	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	3.94291	4.12065	4.29839	0.0374229	0.0294717	0.155878	0.128055
chr1	243170351	243170448	667857	0	-	0.360825	(0.35,0.378]	chr1	79262	2	INTRON	INTRON	CEP170	ENSG00000143702.16	ENST00000366544.5:ENST00000366543.5:ENST00000366542.6:ENST00000336415.8:ENST00000518289.5:ENST00000522895.1:ENST00000461671.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	24	2	3.94291	4.12065	4.29839	0.0374229	0.0294717	0.155878	0.128055
chr10	92551128	92551228	4665177	0	-	0.37	(0.35,0.378]	chr10	429880	99	INTRON	INTRON	IDE	ENSG00000119912.18	ENST00000265986.11:ENST00000679312.1:ENST00000650060.1:ENST00000679089.1:ENST00000677569.1:ENST00000677096.1:ENST00000679222.1:ENST00000676540.1:ENST00000678026.1:ENST00000676626.1:ENST00000679069.1:ENST00000678977.1:ENST00000679232.1:ENST00000678844.1:ENST00000679174.1:ENST00000678673.1:ENST00000676816.1:ENST00000678715.1:ENST00000678458.1:ENST00000677079.1:ENST00000677434.1:ENST00000678248.1:ENST00000478361.6:ENST00000677978.1:ENST00000677196.1:ENST00000677953.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	24	2	3.94291	4.12065	4.29839	0.0374229	0.0294717	0.155878	0.128055
chr12	110300930	110301030	5226299	0	+	0.36	(0.35,0.378]	chr12	495250	38	INTRON	INTRON	ATP2A2	ENSG00000174437.18	ENST00000308664.10:ENST00000539276.7:ENST00000377685.9:ENST00000548169.2:ENST00000550248.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	24	2	3.94291	4.12065	4.29839	0.0374229	0.0294717	0.155878	0.128055
chr14	30609544	30609642	5674910	0	+	0.367347	(0.35,0.378]	chr14	540587	11	INTRON	INTRON	G2E3	ENSG00000092140.16	ENST00000206595.11:ENST00000438909.6:ENST00000648008.1:ENST00000553504.5:ENST00000548934.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	24	2	3.94291	4.12065	4.29839	0.0374229	0.0294717	0.155878	0.128055
chr15	87579991	87580091	6255354	0	-	0.36	(0.35,0.378]	chr15	596826	366	INTRON	INTRON	ENSG00000259560	ENSG00000259560.2	ENST00000665121.1:ENST00000560439.1	lncRNA	lncRNA	lncRNA	lncRNA	0	24	2	3.94291	4.12065	4.29839	0.0374229	0.0294717	0.155878	0.128055
chr16	53084964	53085064	6351018	0	+	0.37	(0.35,0.378]	chr16	609666	295	INTRON	INTRON	CHD9	ENSG00000177200.18	ENST00000447540.6:ENST00000566029.5:ENST00000615216.4:ENST00000561869.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	24	2	3.94291	4.12065	4.29839	0.0374229	0.0294717	0.155878	0.128055
chr18	58342505	58342605	6918219	0	+	0.37	(0.35,0.378]	chr18	684590	2	SS3_PROX	SS3_PROX:INTRON	NEDD4L	ENSG00000049759.20	ENST00000400345.8:ENST00000356462.10:ENST00000674845.1:ENST00000589054.5:ENST00000676024.1:ENST00000382850.8:ENST00000256830.13:ENST00000676223.1:ENST00000675147.1:ENST00000675801.1:ENST00000456986.5:ENST00000675502.1:ENST00000357895.9:ENST00000435432.6:ENST00000586263.5:ENST00000456173.6:ENST00000676226.1:ENST00000675865.1:ENST00000675221.1:ENST00000431212.6:ENST00000674636.1:ENST00000674856.1:ENST00000675434.1:ENST00000635997.1:ENST00000674517.1:ENST00000587881.1:ENST00000590638.5:ENST00000679791.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	24	2	3.94291	4.12065	4.29839	0.0374229	0.0294717	0.155878	0.128055
chr19	47630490	47630590	7085976	0	+	0.36	(0.35,0.378]	chr19	709045	225	INTRON	INTRON	ENSG00000268746	ENSG00000268746.1	ENST00000599924.1	lncRNA	lncRNA	lncRNA	lncRNA	0	24	2	3.94291	4.12065	4.29839	0.0374229	0.0294717	0.155878	0.128055
chr2	108610953	108611053	846619	0	+	0.37	(0.35,0.378]	chr2	94691	33	INTRON	INTRON	LIMS1	ENSG00000169756.17	ENST00000695516.1:ENST00000544547.6:ENST00000695517.1:ENST00000695518.1:ENST00000695519.1:ENST00000332345.10:ENST00000695520.1:ENST00000393310.5:ENST00000695521.1:ENST00000410093.5	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	3.94291	4.12065	4.29839	0.0374229	0.0294717	0.155878	0.128055
chr2	175151857	175151957	1272178	0	-	0.37	(0.35,0.378]	chr2	134482	3	INTRON	INTRON	ATF2	ENSG00000115966.18	ENST00000345739.9:ENST00000426833.7:ENST00000264110.7:ENST00000409635.5:ENST00000428760.5:ENST00000392544.5:ENST00000417080.5:ENST00000456655.5:ENST00000421438.5:ENST00000429579.5:ENST00000415955.5:ENST00000409499.5:ENST00000435231.6:ENST00000437522.5:ENST00000409833.5:ENST00000413123.5:ENST00000445349.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	24	2	3.94291	4.12065	4.29839	0.0374229	0.0294717	0.155878	0.128055
chr3	180964976	180965075	1569145	0	+	0.363636	(0.35,0.378]	chr3	162433	15	INTRON	INTRON	FXR1	ENSG00000114416.18	ENST00000305586.11:ENST00000475315.5:ENST00000357559.9:ENST00000468861.5:ENST00000491062.5:ENST00000445140.6:ENST00000472339.5:ENST00000480918.5:ENST00000498658.5:ENST00000476672.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	24	2	3.94291	4.12065	4.29839	0.0374229	0.0294717	0.155878	0.128055
chr7	73484823	73484922	3554720	0	-	0.373737	(0.35,0.378]	chr7	330783	59	INTRON	INTRON	BAZ1B	ENSG00000009954.11	ENST00000339594.9:ENST00000404251.1	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	3.94291	4.12065	4.29839	0.0374229	0.0294717	0.155878	0.128055
chr7	74701820	74701918	3335695	0	+	0.357143	(0.35,0.378]	chr7	310373	8	INTRON	INTRON	GTF2I	ENSG00000263001.8	ENST00000650807.1:ENST00000690345.1:ENST00000573035.6:ENST00000614986.4:ENST00000620879.4:ENST00000621734.4:ENST00000443166.5	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	3.94291	4.12065	4.29839	0.0374229	0.0294717	0.155878	0.128055
chr9	124680407	124680507	4348306	0	-	0.36	(0.35,0.378]	chr9	399255	847	INTRON	INTRON	NR6A1	ENSG00000148200.17	ENST00000487099.7:ENST00000373584.7:ENST00000416460.6:ENST00000344523.8	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	3.94291	4.12065	4.29839	0.0374229	0.0294717	0.155878	0.128055
chr7	128542927	128543027	3407473	0	+	0.53	(0.515,0.57]	chr7	318333	88	INTRON	INTRON	ENSG00000280828	ENSG00000280828.1	ENST00000479267.2	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	2	59	2	2.96467	4.12059	5.27651	8.94279e-4	5.11033e-4	0.0273458	0.020816
chr13	46052670	46052759	5586212	0	-	0.516854	(0.515,0.57]	chr13	533874	4	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	ZC3H13	ENSG00000123200.17	ENST00000242848.8:ENST00000679008.1:ENST00000282007.7:ENST00000428921.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	45	2	2.9114	4.120485	5.32957	0.00826019	4.06834e-4	0.0813266	0.0185763
chr6	157880075	157880175	3016336	0	+	0.55	(0.515,0.57]	chr6	281379	32	INTRON	INTRON	SNX9	ENSG00000130340.17	ENST00000680863.1:ENST00000679814.1:ENST00000680464.1:ENST00000681186.1:ENST00000679732.1:ENST00000681183.1:ENST00000681534.1:ENST00000681651.1:ENST00000680089.1:ENST00000680078.1:ENST00000680974.1:ENST00000680095.1:ENST00000680015.1:ENST00000681138.1:ENST00000392185.8:ENST00000679790.1:ENST00000680495.1:ENST00000679691.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	45	2	2.9114	4.120485	5.32957	0.00826019	4.06834e-4	0.0813266	0.0185763
chr9	131631614	131631713	4362819	0	-	0.535354	(0.515,0.57]	chr9	401254	9	INTRON	INTRON	RAPGEF1	ENSG00000107263.19	ENST00000372195.5:ENST00000372189.7:ENST00000683357.1:ENST00000372190.7:ENST00000481260.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	45	2	2.9114	4.120485	5.32957	0.00826019	4.06834e-4	0.0813266	0.0185763
chr5	139351586	139351686	2499880	0	+	0.33	(0.32,0.35]	chr5	238989	78	INTRON	INTRON	PAIP2	ENSG00000120727.13	ENST00000507755.5:ENST00000265192.9:ENST00000510409.1:ENST00000511381.1:ENST00000511706.5:ENST00000507415.1:ENST00000394795.6:ENST00000510080.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	53	2	3.28107	4.12039	4.95971	0.00663522	0.00262488	0.0703181	0.0470772
chr1	6548571	6548671	368061	0	-	0.3	(0.28,0.32]	chr1	43225	30	INTRON	INTRON	NOL9	ENSG00000162408.11	ENST00000377705.6	protein_coding	protein_coding	protein_coding	protein_coding	5	246	2	3.20952	4.1203899999999996	5.03126	3.21422e-5	1.39131e-6	0.00452387	7.71562e-4
chr3	42626200	42626300	1406234	0	+	0.2	[0,0.28]	chr3	147675	43	INTRON	INTRON	NKTR	ENSG00000114857.19	ENST00000468735.6:ENST00000487466.5:ENST00000429888.5:ENST00000232978.13:ENST00000478488.1:ENST00000465584.5:ENST00000466553.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	98	2	2.50706	4.11991	5.73276	0.00338815	0.00156565	0.0535583	0.0360583
chr10	86801688	86801788	4479848	0	+	0.49	(0.476,0.515]	chr10	412292	444	INTRON	INTRON	BMPR1A	ENSG00000107779.14	ENST00000638429.1:ENST00000372037.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	49	2	3.40003	4.1198250000000005	4.83962	0.00480934	0.00139193	0.0602209	0.0341261
chr9	100339156	100339256	4309033	0	-	0.5	(0.476,0.515]	chr9	395874	86	INTRON	INTRON	TEX10	ENSG00000136891.14	ENST00000535814.5:ENST00000374902.9:ENST00000429235.1	protein_coding	protein_coding	protein_coding	protein_coding	1	49	2	3.40003	4.1198250000000005	4.83962	0.00480934	0.00139193	0.0602209	0.0341261
chr19	11147133	11147182	7136883	0	-	0.693878	(0.57,1]	chr19	719786	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	SPC24	ENSG00000161888.12	ENST00000585567.5:ENST00000592540.6:ENST00000591396.5:ENST00000592967.5:ENST00000423327.2:ENST00000586708.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	36	2	2.66801	4.1198	5.57159	0.0169968	9.47307e-6	0.110899	0.00236268
chr19	1018796	1018894	7111079	0	-	0.489796	(0.476,0.515]	chr19	714229	15	INTRON	INTRON	TMEM259	ENSG00000182087.14	ENST00000593068.7:ENST00000333175.9:ENST00000356663.8:ENST00000586704.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	52	2	3.24596	4.11969	4.99342	0.00322919	0.00139274	0.0507087	0.0341261
chr1	246033557	246033657	675966	0	-	0.53	(0.515,0.57]	chr1	79713	451	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000391836.3:ENST00000464398.1:ENST00000453676.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	52	2	3.73809	4.119555	4.50102	0.00510768	3.11298e-4	0.0646039	0.0162055
chr20	31766155	31766255	7253932	0	+	0.25	[0,0.28]	chr20	736746	2	SS3_PROX	SS3_PROX:INTRON	TPX2	ENSG00000088325.16	ENST00000340513.4:ENST00000300403.11	protein_coding	protein_coding	protein_coding	protein_coding	1	60	2	3.18138	4.1194299999999995	5.05748	0.0113653	0.00487606	0.0886611	0.0640618
chr1	181974335	181974435	596469	0	-	0.5	(0.476,0.515]	chr1	71266	75	INTRON	INTRON	ENSG00000287452	ENSG00000287452.2	ENST00000671017.1	lncRNA	lncRNA	lncRNA	lncRNA	1	51	2	3.62464	4.11933	4.61402	0.00947755	5.079e-4	0.0817766	0.0202328
chr2	74172952	74173052	1157071	0	-	0.48	(0.476,0.515]	chr2	123719	2	SS3_PROX	SS3_PROX:INTRON	MOB1A	ENSG00000114978.18	ENST00000396049.5:ENST00000497054.5:ENST00000495286.5:ENST00000463975.1:ENST00000488006.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	51	2	3.62464	4.11933	4.61402	0.00947755	5.079e-4	0.0817766	0.0202328
chr12	43720389	43720488	5313793	0	-	0.474747	(0.44,0.476]	chr12	505399	15	UTR3	UTR3:EXON_MRNA	PUS7L	ENSG00000129317.15	ENST00000344862.10	protein_coding	protein_coding	protein_coding	protein_coding	1	52	2	3.17572	4.1193	5.06288	0.00427037	0.00102416	0.0573912	0.0294041
chr2	86117559	86117659	822492	0	+	0.45	(0.44,0.476]	chr2	91764	4	SS5_PROX	SS5_PROX:INTRON	PTCD3	ENSG00000132300.19	ENST00000465560.5:ENST00000409783.6:ENST00000254630.12:ENST00000483925.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	52	2	3.17572	4.1193	5.06288	0.00427037	0.00102416	0.0573912	0.0294041
chrX	289466	289563	7605347	0	+	0.453608	(0.44,0.476]	chrX	779396	2	INTRON	INTRON	PLCXD1	ENSG00000182378.15	ENST00000399012.6:ENST00000484611.7:ENST00000430923.7:ENST00000381657.8:ENST00000415337.6:ENST00000447472.6:ENST00000448477.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	52	2	3.17572	4.1193	5.06288	0.00427037	0.00102416	0.0573912	0.0294041
chr20	50953810	50953908	7356087	0	-	0.418367	(0.408,0.44]	chr20	750155	3	EXON_MRNA	EXON_MRNA:INTRON	DPM1	ENSG00000000419.14	ENST00000371582.8:ENST00000466152.5:ENST00000683048.1:ENST00000371588.10:ENST00000371584.9:ENST00000683466.1:ENST00000681979.1:ENST00000684708.1:ENST00000413082.1:ENST00000682754.1:ENST00000683010.1:ENST00000684628.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	49	2	3.41323	4.119265	4.8253	0.0056738	0.00129989	0.0653997	0.0333764
chr8	91071289	91071389	3797002	0	+	0.33	(0.32,0.35]	chr8	351874	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	OTUD6B	ENSG00000155100.11	ENST00000285420.8:ENST00000617869.4:ENST00000615618.1:ENST00000522894.5:ENST00000404789.8:ENST00000524027.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	71	2	2.85974	4.119035	5.37833	0.00186579	0.00174321	0.0399675	0.0375363
chr1	47217171	47217269	445291	0	-	0.428571	(0.408,0.44]	chr1	53935	10	UTR3	UTR3:EXON_MRNA	TAL1	ENSG00000162367.12	ENST00000371884.6:ENST00000691006.1:ENST00000294339.3	protein_coding	protein_coding	protein_coding	protein_coding	10	433	2	3.77644	4.11897	4.4615	1.59049e-7	1.1327e-9	1.95236e-4	8.30185e-6
chr10	68517932	68518027	4640188	0	-	0.463158	(0.44,0.476]	chr10	426804	8	EXON_LNCRNA	EXON_LNCRNA:INTRON	SLC25A16	ENSG00000122912.15	ENST00000609923.6:ENST00000265870.7:ENST00000493963.5:ENST00000491102.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	52	2	2.58033	4.11883	5.65733	0.0247511	2.3957e-4	0.131869	0.0142132
chr17	77094700	77094796	6678160	0	+	0.572917	(0.57,1]	chr17	652310	15	EXON_LNCRNA	EXON_LNCRNA:INTRON	SNHG20:SEC14L1	ENSG00000234912.12:ENSG00000129657.16	ENST00000564414.5:ENST00000568056.5:ENST00000647734.1:ENST00000434411.6:ENST00000649712.1:ENST00000650557.1:ENST00000647904.1:ENST00000648984.1:ENST00000392476.6:ENST00000589827.5:ENST00000561721.6:ENST00000561633.5:ENST00000564509.5:ENST00000565256.1:ENST00000566583.5:ENST00000648740.1:ENST00000569632.1:ENST00000430767.8	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	6	139	2	3.46243	4.118815	4.7752	8.99626e-7	7.82868e-10	5.37848e-4	4.15443e-6
chr2	131565351	131565450	867438	0	+	0.333333	(0.32,0.35]	chr2	97472	6	EXON_LNCRNA	EXON_LNCRNA	ENSG00000286208	ENSG00000286208.1	ENST00000652012.1	lncRNA	lncRNA	lncRNA	lncRNA	2	71	2	2.49929	4.11876	5.73823	0.00776612	4.5635e-4	0.0787356	0.0196892
chr1	35291734	35291834	68518	0	+	0.48	(0.476,0.515]	chr1	8717	223	INTRON	INTRON	ZMYM4	ENSG00000146463.12	ENST00000314607.11:ENST00000441447.1	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	4.01777	4.118705	4.21964	0.0411361	0.0167715	0.1451	0.110511
chr1	37890124	37890224	425607	0	-	0.49	(0.476,0.515]	chr1	51613	4	SS3_PROX	SS3_PROX:INTRON	INPP5B	ENSG00000204084.13	ENST00000373023.6:ENST00000373024.8:ENST00000458109.6:ENST00000373027.5:ENST00000373026.5	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	4.01777	4.118705	4.21964	0.0411361	0.0167715	0.1451	0.110511
chr1	91853980	91854079	504298	0	-	0.515152	(0.476,0.515]	chr1	59635	526	INTRON	INTRON	TGFBR3	ENSG00000069702.11	ENST00000212355.9:ENST00000533089.5:ENST00000370399.6:ENST00000525962.5:ENST00000532540.5:ENST00000465892.6:ENST00000417833.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	23	2	4.01777	4.118705	4.21964	0.0411361	0.0167715	0.1451	0.110511
chr1	153757963	153758063	227186	0	+	0.48	(0.476,0.515]	chr1	26070	2	SS5_PROX	SS5_PROX:INTRON	INTS3	ENSG00000143624.14	ENST00000318967.7:ENST00000435409.6:ENST00000481797.5:ENST00000512605.4:ENST00000476843.5:ENST00000480659.1:ENST00000503133.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	23	2	4.01777	4.118705	4.21964	0.0411361	0.0167715	0.1451	0.110511
chr1	228454914	228455014	652212	0	-	0.49	(0.476,0.515]	chr1	77217	125	INTRON	INTRON	H2AW	ENSG00000181218.6	ENST00000691624.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	0	23	2	4.01777	4.118705	4.21964	0.0411361	0.0167715	0.1451	0.110511
chr10	35039795	35039894	4600636	0	-	0.494949	(0.476,0.515]	chr10	423813	3	INTRON	INTRON	CUL2	ENSG00000108094.17	ENST00000626172.3:ENST00000374751.7:ENST00000374748.5:ENST00000374749.8:ENST00000690123.1:ENST00000537177.6:ENST00000374746.6:ENST00000691974.1:ENST00000688571.1:ENST00000690393.1:ENST00000690092.1:ENST00000374754.9:ENST00000691272.1:ENST00000688390.1:ENST00000687282.1:ENST00000691201.1:ENST00000687194.1:ENST00000691962.1:ENST00000691858.1:ENST00000691263.1:ENST00000687524.1:ENST00000673636.2:ENST00000692866.1:ENST00000693739.1:ENST00000686302.1:ENST00000685681.1:ENST00000421317.5:ENST00000684965.1:ENST00000691457.1:ENST00000688541.1:ENST00000689330.1:ENST00000685488.1:ENST00000686748.1:ENST00000690789.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	23	2	4.01777	4.118705	4.21964	0.0411361	0.0167715	0.1451	0.110511
chr12	927963	928063	5255274	0	-	0.48	(0.476,0.515]	chr12	500098	3	INTRON	INTRON	RAD52	ENSG00000002016.18	ENST00000358495.8:ENST00000228345.9:ENST00000468231.5:ENST00000481052.5:ENST00000430095.6:ENST00000488642.6:ENST00000543912.5:ENST00000461568.5:ENST00000463750.5:ENST00000536177.5:ENST00000542584.5:ENST00000545564.5:ENST00000545967.1:ENST00000542785.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	23	2	4.01777	4.118705	4.21964	0.0411361	0.0167715	0.1451	0.110511
chr12	130824147	130824245	5448107	0	-	0.5	(0.476,0.515]	chr12	521572	20	INTRON	INTRON	STX2	ENSG00000111450.14	ENST00000261653.10:ENST00000392373.7:ENST00000344271.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	23	2	4.01777	4.118705	4.21964	0.0411361	0.0167715	0.1451	0.110511
chr16	14623523	14623623	6449784	0	-	0.49	(0.476,0.515]	chr16	621351	2	SS5_PROX	SS5_PROX:INTRON	PARN	ENSG00000140694.17	ENST00000651865.1:ENST00000437198.7:ENST00000651348.1:ENST00000650990.1:ENST00000651760.1:ENST00000652541.1:ENST00000652727.1:ENST00000652066.1:ENST00000651300.1:ENST00000420015.6:ENST00000652051.1:ENST00000341484.11:ENST00000539279.5:ENST00000651049.1:ENST00000650960.1:ENST00000651634.1:ENST00000564113.6:ENST00000652411.1:ENST00000652501.1:ENST00000651027.1:ENST00000651913.1:ENST00000563641.6:ENST00000651241.1:ENST00000538472.5:ENST00000566021.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	23	2	4.01777	4.118705	4.21964	0.0411361	0.0167715	0.1451	0.110511
chr17	67828530	67828630	6667731	0	+	0.49	(0.476,0.515]	chr17	650544	18	INTRON	INTRON	BPTF	ENSG00000171634.19	ENST00000306378.11:ENST00000544778.6:ENST00000321892.8:ENST00000342579.8:ENST00000644067.1:ENST00000424123.7	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	4.01777	4.118705	4.21964	0.0411361	0.0167715	0.1451	0.110511
chr19	32703812	32703911	7049795	0	+	0.484848	(0.476,0.515]	chr19	702960	108	INTRON	INTRON	NUDT19	ENSG00000213965.4	ENST00000397061.4	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	4.01777	4.118705	4.21964	0.0411361	0.0167715	0.1451	0.110511
chr19	36685100	36685199	7175254	0	-	0.484848	(0.476,0.515]	chr19	725119	26	EXON_LNCRNA	EXON_LNCRNA	ZNF567-DT	ENSG00000225975.8	ENST00000665321.2	lncRNA	lncRNA	lncRNA	lncRNA	0	23	2	4.01777	4.118705	4.21964	0.0411361	0.0167715	0.1451	0.110511
chr2	177251829	177251928	1275718	0	-	0.515152	(0.476,0.515]	chr2	134708	172	INTRON	INTRON	NFE2L2	ENSG00000116044.16	ENST00000397063.8:ENST00000464747.5:ENST00000397062.8:ENST00000446151.6:ENST00000449627.1:ENST00000448782.5:ENST00000430047.1:ENST00000586532.5:ENST00000421929.5:ENST00000423513.5:ENST00000588123.1:ENST00000477534.1:ENST00000462023.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	23	2	4.01777	4.118705	4.21964	0.0411361	0.0167715	0.1451	0.110511
chr3	129143169	129143269	1814977	0	-	0.51	(0.476,0.515]	chr3	182431	23	INTRON	INTRON	ISY1-RAB43:ISY1	ENSG00000261796.1:ENSG00000240682.10	ENST00000418265.1:ENST00000393295.8:ENST00000273541.12:ENST00000471497.5:ENST00000496163.5:ENST00000393292.7:ENST00000485703.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	23	2	4.01777	4.118705	4.21964	0.0411361	0.0167715	0.1451	0.110511
chr3	183722931	183723030	1580544	0	+	0.515152	(0.476,0.515]	chr3	163044	4	INTRON	INTRON	YEATS2	ENSG00000163872.16	ENST00000305135.10	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	4.01777	4.118705	4.21964	0.0411361	0.0167715	0.1451	0.110511
chr5	32258052	32258151	2597842	0	-	0.494949	(0.476,0.515]	chr5	246812	19	INTRON	INTRON	MTMR12	ENSG00000150712.11	ENST00000280285.9:ENST00000382142.8:ENST00000264934.5	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	4.01777	4.118705	4.21964	0.0411361	0.0167715	0.1451	0.110511
chr5	60634366	60634465	2626848	0	-	0.515152	(0.476,0.515]	chr5	249561	58	INTRON	INTRON	DEPDC1B	ENSG00000035499.13	ENST00000265036.10:ENST00000453022.6:ENST00000512078.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	23	2	4.01777	4.118705	4.21964	0.0411361	0.0167715	0.1451	0.110511
chr5	97254568	97254668	2437520	0	+	0.48	(0.476,0.515]	chr5	234111	386	INTRON	INTRON	LIX1-AS1	ENSG00000251513.2	ENST00000504578.2	lncRNA	lncRNA	lncRNA	lncRNA	0	23	2	4.01777	4.118705	4.21964	0.0411361	0.0167715	0.1451	0.110511
chr5	150390223	150390323	2519569	0	+	0.51	(0.476,0.515]	chr5	240972	2	SS5_PROX	SS5_PROX:INTRON	TCOF1	ENSG00000070814.22	ENST00000650162.1:ENST00000377797.7:ENST00000445265.6:ENST00000323668.11:ENST00000643257.2:ENST00000439160.6:ENST00000427724.7:ENST00000513346.5:ENST00000504761.6:ENST00000515516.1:ENST00000674413.1:ENST00000514442.5:ENST00000506767.1:ENST00000506630.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	23	2	4.01777	4.118705	4.21964	0.0411361	0.0167715	0.1451	0.110511
chr6	167028093	167028193	3033663	0	+	0.48	(0.476,0.515]	chr6	282679	1	SS5_PROX	SS5_PROX:INTRON	CEP43	ENSG00000213066.13	ENST00000622353.4:ENST00000366847.9:ENST00000349556.4:ENST00000488525.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	23	2	4.01777	4.118705	4.21964	0.0411361	0.0167715	0.1451	0.110511
chr6	170624004	170624104	3037691	0	+	0.49	(0.476,0.515]	chr6	283173	80	INTRON	INTRON	ENSG00000287411:ENSG00000230423	ENSG00000287411.1:ENSG00000230423.3	ENST00000667394.1:ENST00000656791.1	lncRNA	lncRNA	lncRNA	lncRNA	0	23	2	4.01777	4.118705	4.21964	0.0411361	0.0167715	0.1451	0.110511
chr7	98129447	98129546	3357831	0	+	0.515152	(0.476,0.515]	chr7	313233	23	INTRON	INTRON	LMTK2	ENSG00000164715.6	ENST00000297293.6:ENST00000493372.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	23	2	4.01777	4.118705	4.21964	0.0411361	0.0167715	0.1451	0.110511
chr7	140855508	140855608	3663041	0	-	0.41	(0.408,0.44]	chr7	340105	49	INTRON	INTRON	BRAF	ENSG00000157764.14	ENST00000496384.7:ENST00000644969.2:ENST00000646891.1:ENST00000644905.1:ENST00000642228.1:ENST00000288602.11:ENST00000646730.1:ENST00000497784.2:ENST00000642272.1:ENST00000642808.1:ENST00000643790.1:ENST00000469930.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	49	2	2.89193	4.118705	5.34548	0.00950364	9.40657e-4	0.0863579	0.0280776
chr8	20225406	20225506	3710897	0	+	0.5	(0.476,0.515]	chr8	344376	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ATP6V1B2	ENSG00000147416.11	ENST00000521442.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	0	23	2	4.01777	4.118705	4.21964	0.0411361	0.0167715	0.1451	0.110511
chr11	73881196	73881295	4826006	0	+	0.292929	(0.28,0.32]	chr11	450372	6	INTRON	INTRON	PAAF1	ENSG00000175575.13	ENST00000541951.5:ENST00000504441.6:ENST00000543814.5:ENST00000535604.5:ENST00000536003.5:ENST00000542293.5:ENST00000310571.8:ENST00000544552.5:ENST00000546039.5	protein_coding	protein_coding	protein_coding	protein_coding	1	56	2	2.80157	4.118634999999999	5.4357	0.0147132	0.00215368	0.106558	0.0417866
chr1	21654794	21654893	395627	0	-	0.484848	(0.476,0.515]	chr1	47170	16	INTRON	INTRON	RAP1GAP	ENSG00000076864.21	ENST00000374765.9:ENST00000542643.6:ENST00000611549.4:ENST00000317967.11:ENST00000482984.5:ENST00000464457.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	23	2	4.10113	4.118495	4.13586	0.031846	0.0226984	0.13151	0.124921
chr1	29105835	29105935	60901	0	+	0.49	(0.476,0.515]	chr1	7771	75	INTRON	INTRON	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000373798.5:ENST00000649674.1:ENST00000343067.9:ENST00000349460.9:ENST00000490308.2:ENST00000650132.1:ENST00000649992.1:ENST00000460378.1:ENST00000462032.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	23	2	4.10113	4.118495	4.13586	0.031846	0.0226984	0.13151	0.124921
chr11	68918778	68918876	4819175	0	+	0.479592	(0.476,0.515]	chr11	449187	5	INTRON	INTRON	IGHMBP2	ENSG00000132740.10	ENST00000675615.1:ENST00000676228.1:ENST00000255078.8:ENST00000676173.1:ENST00000674955.1:ENST00000675118.1:ENST00000675305.1:ENST00000675648.1:ENST00000674775.1:ENST00000675684.1:ENST00000675493.1:ENST00000674745.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	23	2	4.10113	4.118495	4.13586	0.031846	0.0226984	0.13151	0.124921
chr12	112453787	112453887	5230149	0	+	0.49	(0.476,0.515]	chr12	495854	4	SS5_PROX	SS5_PROX:INTRON	PTPN11	ENSG00000179295.19	ENST00000688597.1:ENST00000692624.1:ENST00000685487.1:ENST00000690210.1:ENST00000639857.2:ENST00000392597.5:ENST00000687906.1:ENST00000351677.7:ENST00000635625.1:ENST00000530818.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	23	2	4.10113	4.118495	4.13586	0.031846	0.0226984	0.13151	0.124921
chr14	49822524	49822622	5886946	0	-	0.489796	(0.476,0.515]	chr14	558728	17	INTRON	INTRON	NEMF	ENSG00000165525.18	ENST00000298310.10:ENST00000556925.5:ENST00000555970.5:ENST00000555411.1:ENST00000557380.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	23	2	4.10113	4.118495	4.13586	0.031846	0.0226984	0.13151	0.124921
chr16	15995831	15995931	6308221	0	+	0.48	(0.476,0.515]	chr16	603510	457	INTRON	INTRON	ABCC1	ENSG00000103222.20	ENST00000574224.2:ENST00000678422.1:ENST00000677164.1:ENST00000399408.7:ENST00000572882.3:ENST00000399410.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	23	2	4.10113	4.118495	4.13586	0.031846	0.0226984	0.13151	0.124921
chr16	88658339	88658434	6539272	0	-	0.494737	(0.476,0.515]	chr16	633735	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MVD	ENSG00000167508.12	ENST00000301012.8:ENST00000569177.5:ENST00000567064.5:ENST00000568133.5:ENST00000563785.5:ENST00000568709.5:ENST00000563170.5:ENST00000566636.5:ENST00000562651.5:ENST00000565610.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	23	2	4.10113	4.118495	4.13586	0.031846	0.0226984	0.13151	0.124921
chr17	16100554	16100651	6734060	0	-	0.505155	(0.476,0.515]	chr17	660625	17	INTRON	INTRON	NCOR1	ENSG00000141027.22	ENST00000268712.8:ENST00000395851.5:ENST00000395848.5	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	4.10113	4.118495	4.13586	0.031846	0.0226984	0.13151	0.124921
chr19	19507153	19507252	7036379	0	+	0.484848	(0.476,0.515]	chr19	701523	18	UTR3	UTR3:EXON_MRNA	GATAD2A	ENSG00000167491.18	ENST00000360315.7:ENST00000683918.1:ENST00000404158.5:ENST00000358713.7:ENST00000418032.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	23	2	4.10113	4.118495	4.13586	0.031846	0.0226984	0.13151	0.124921
chr19	36707984	36708082	7058100	0	+	0.510204	(0.476,0.515]	chr19	704730	39	INTRON	INTRON	ZNF567	ENSG00000189042.14	ENST00000682579.1:ENST00000590392.5:ENST00000536254.6:ENST00000360729.8:ENST00000588311.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	23	2	4.10113	4.118495	4.13586	0.031846	0.0226984	0.13151	0.124921
chr19	57285866	57285964	7103584	0	+	0.5	(0.476,0.515]	chr19	712857	8	INTRON	INTRON	ZNF460	ENSG00000197714.9	ENST00000537645.5:ENST00000360338.4:ENST00000599602.1	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	4.10113	4.118495	4.13586	0.031846	0.0226984	0.13151	0.124921
chr20	32801705	32801794	7257082	0	+	0.505618	(0.476,0.515]	chr20	737221	3	SS5_PROX	SS5_PROX:INTRON	DNMT3B	ENSG00000088305.19	ENST00000696232.1:ENST00000328111.6:ENST00000696231.1:ENST00000348286.6:ENST00000353855.6:ENST00000696233.1:ENST00000443239.7:ENST00000456297.6:ENST00000201963.3:ENST00000696238.1:ENST00000696239.1:ENST00000696245.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	23	2	4.10113	4.118495	4.13586	0.031846	0.0226984	0.13151	0.124921
chr22	40961564	40961663	7521364	0	+	0.515152	(0.476,0.515]	chr22	768492	76	INTRON	INTRON	RBX1	ENSG00000100387.9	ENST00000476110.1:ENST00000216225.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	23	2	4.10113	4.118495	4.13586	0.031846	0.0226984	0.13151	0.124921
chr4	165253026	165253125	2078910	0	+	0.484848	(0.476,0.515]	chr4	205484	122	INTRON	INTRON	KLHL2	ENSG00000109466.14	ENST00000226725.11:ENST00000509704.5:ENST00000514860.5:ENST00000538127.5:ENST00000506824.5:ENST00000421009.6:ENST00000506541.5:ENST00000506761.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	23	2	4.10113	4.118495	4.13586	0.031846	0.0226984	0.13151	0.124921
chr5	71614654	71614754	2385111	0	+	0.51	(0.476,0.515]	chr5	230143	98	INTRON	INTRON	MCCC2	ENSG00000131844.17	ENST00000505787.8:ENST00000682499.1:ENST00000682214.1:ENST00000682045.1:ENST00000683789.1:ENST00000681968.1:ENST00000683665.1:ENST00000512218.6:ENST00000682541.1:ENST00000682727.1:ENST00000683098.1:ENST00000683258.1:ENST00000684254.1:ENST00000510895.7:ENST00000683882.1:ENST00000684024.1:ENST00000683403.1:ENST00000682687.1:ENST00000682876.1:ENST00000629193.3:ENST00000683429.1:ENST00000340941.11:ENST00000509358.7:ENST00000505435.4:ENST00000683339.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	23	2	4.10113	4.118495	4.13586	0.031846	0.0226984	0.13151	0.124921
chr6	28921205	28921298	3075574	0	-	0.494624	(0.476,0.515]	chr6	285952	6	INTRON	INTRON	TRIM27	ENSG00000204713.11	ENST00000377194.7:ENST00000377199.4:ENST00000481474.5:ENST00000498117.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	23	2	4.10113	4.118495	4.13586	0.031846	0.0226984	0.13151	0.124921
chr6	110769478	110769578	3189997	0	-	0.49	(0.476,0.515]	chr6	297121	229	INTRON	INTRON	CDK19	ENSG00000155111.15	ENST00000323817.7:ENST00000368911.8:ENST00000413605.6:ENST00000457688.5:ENST00000460913.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	23	2	4.10113	4.118495	4.13586	0.031846	0.0226984	0.13151	0.124921
chr6	158007924	158008024	3017272	0	+	0.48	(0.476,0.515]	chr6	281468	255	INTRON	INTRON	SYNJ2	ENSG00000078269.15	ENST00000355585.9:ENST00000640338.1:ENST00000367113.5	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	4.10113	4.118495	4.13586	0.031846	0.0226984	0.13151	0.124921
chr6	161075305	161075405	3025336	0	+	0.48	(0.476,0.515]	chr6	282345	13	INTRON	INTRON	MAP3K4	ENSG00000085511.20	ENST00000366919.6:ENST00000392142.9:ENST00000366920.6:ENST00000348824.11:ENST00000544041.5:ENST00000490904.6:ENST00000542851.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	23	2	4.10113	4.118495	4.13586	0.031846	0.0226984	0.13151	0.124921
chr7	101854750	101854850	3366736	0	+	0.5	(0.476,0.515]	chr7	315215	354	INTRON	INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000497815.5:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000607092.1:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000558469.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	23	2	4.10113	4.118495	4.13586	0.031846	0.0226984	0.13151	0.124921
chr8	124507093	124507191	4043839	0	-	0.479592	(0.476,0.515]	chr8	368880	24	INTRON	INTRON	TATDN1	ENSG00000147687.19	ENST00000522927.5:ENST00000276692.11:ENST00000630259.1:ENST00000523214.5:ENST00000523631.5:ENST00000519548.5:ENST00000522810.5:ENST00000517678.5:ENST00000519776.5:ENST00000521546.5:ENST00000521973.5:ENST00000605953.5:ENST00000522310.5:ENST00000520321.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	23	2	4.10113	4.118495	4.13586	0.031846	0.0226984	0.13151	0.124921
chrX	47203996	47204096	7655681	0	+	0.49	(0.476,0.515]	chrX	783250	3	SS5_PROX	SS5_PROX:INTRON	UBA1	ENSG00000130985.17	ENST00000377351.8:ENST00000335972.11:ENST00000490869.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	23	2	4.10113	4.118495	4.13586	0.031846	0.0226984	0.13151	0.124921
chr6	119252749	119252849	3204843	0	-	0.39	(0.378,0.408]	chr6	298308	40	INTRON	INTRON	MAN1A1	ENSG00000111885.7	ENST00000368468.4	protein_coding	protein_coding	protein_coding	protein_coding	5	100	2	2.10836	4.118465	6.12857	0.00375851	3.77503e-5	0.0562562	0.00523787
chr1	29061183	29061283	60441	0	+	0.22	[0,0.28]	chr1	7726	3	INTRON	INTRON	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000647918.1:ENST00000646800.1:ENST00000644342.1:ENST00000646189.1:ENST00000482464.6:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000646260.1:ENST00000373798.5:ENST00000644600.1:ENST00000649674.1:ENST00000643173.1:ENST00000343067.9:ENST00000644780.1:ENST00000650265.1:ENST00000648181.1:ENST00000643604.1:ENST00000648891.1:ENST00000373797.2:ENST00000349460.9:ENST00000645184.1:ENST00000645111.1:ENST00000643302.1:ENST00000642643.1:ENST00000636666.1:ENST00000644848.1:ENST00000644470.1:ENST00000646871.1:ENST00000488277.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	204	2	4.11577	4.11838	4.12099	2.2411e-4	4.86799e-6	0.0137452	0.00150439
chr11	59587329	59587429	4954314	0	-	0.48	(0.476,0.515]	chr11	465198	54	INTRON	INTRON	OSBP	ENSG00000110048.12	ENST00000263847.6:ENST00000525357.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	51	2	2.9435	4.118155	5.29281	0.00929849	4.07635e-4	0.0817766	0.0181306
chr11	47816715	47816808	4951841	0	-	0.494624	(0.476,0.515]	chr11	464586	3	INTRON	INTRON	NUP160	ENSG00000030066.14	ENST00000694866.1:ENST00000378460.7:ENST00000530326.5:ENST00000528071.5:ENST00000528501.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	51	2	2.99852	4.118105	5.23769	0.0077575	5.17244e-4	0.0757402	0.0203753
chr4	2912503	2912602	1915734	0	+	0.393939	(0.378,0.408]	chr4	192335	27	INTRON	INTRON	ADD1	ENSG00000087274.19	ENST00000683351.1:ENST00000398125.5:ENST00000264758.11:ENST00000513328.6:ENST00000503455.6:ENST00000355842.7:ENST00000651918.1:ENST00000398129.5:ENST00000398123.6:ENST00000514940.5:ENST00000541051.5:ENST00000513762.2:ENST00000536424.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	53	2	2.84663	4.118055	5.38948	0.0133954	2.85992e-4	0.0946278	0.0150568
chr10	17655967	17656067	4399384	0	+	0.42	(0.408,0.44]	chr10	406150	112	INTRON	INTRON	STAM	ENSG00000136738.15	ENST00000377524.8:ENST00000377500.1:ENST00000445846.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	55	2	2.43988	4.117865	5.79585	0.0398236	3.36399e-5	0.143072	0.00463632
chr9	111431505	111431599	4314757	0	-	0.425532	(0.408,0.44]	chr9	396802	5	INTRON	INTRON	ECPAS	ENSG00000136813.15	ENST00000684092.1:ENST00000338205.9:ENST00000259335.8:ENST00000602447.5	protein_coding	protein_coding	protein_coding	protein_coding	1	55	2	2.43988	4.117865	5.79585	0.0398236	3.36399e-5	0.143072	0.00463632
chr16	87736930	87737030	6538379	0	-	0.49	(0.476,0.515]	chr16	633530	59	INTRON	INTRON	KLHDC4	ENSG00000104731.14	ENST00000567298.5:ENST00000270583.10:ENST00000347925.9:ENST00000353170.9:ENST00000316853.10:ENST00000566349.5:ENST00000562155.5:ENST00000622456.4:ENST00000562261.1:ENST00000566661.5:ENST00000567513.1:ENST00000564484.5:ENST00000565328.5:ENST00000569747.5:ENST00000564396.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	54	2	3.45711	4.1178349999999995	4.77856	0.00305743	0.00140905	0.0509893	0.0340865
chr6	75634811	75634892	2905280	0	+	0.271605	[0,0.28]	chr6	274511	1	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	SENP6	ENSG00000112701.18	ENST00000370010.6:ENST00000447266.7:ENST00000327284.12:ENST00000483859.6:ENST00000487548.2:ENST00000424947.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	146	2	1.8392	4.117785	6.39637	0.00841874	1.34289e-4	0.0825628	0.0105876
chr17	82625586	82625679	6853457	0	-	0.602151	(0.57,1]	chr17	679356	1	EXON_LNCRNA	EXON_LNCRNA:SS3_PROX:INTRON	WDR45B	ENSG00000141580.16	ENST00000392325.9:ENST00000572583.5:ENST00000571835.5:ENST00000573616.5:ENST00000571767.5:ENST00000571817.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	51	2	2.96471	4.11769	5.27067	1.58729e-4	5.68536e-5	0.0108333	0.00655354
chr12	98600327	98600427	5199057	0	+	0.5	(0.476,0.515]	chr12	491875	2	SS5_PROX	SS5_PROX:INTRON	SLC25A3	ENSG00000075415.15	ENST00000401722.7:ENST00000188376.9:ENST00000551917.5:ENST00000546766.5:ENST00000228318.8:ENST00000552981.6:ENST00000551123.5:ENST00000549338.5:ENST00000548847.1:ENST00000548480.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	70	2	2.13304	4.117655	6.10227	0.024866	2.54722e-5	0.132101	0.00416607
chr14	102723998	102724097	5823861	0	+	0.373737	(0.35,0.378]	chr14	552546	12	INTRON	INTRON	RCOR1	ENSG00000089902.10	ENST00000262241.7:ENST00000560472.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	82	2	2.24196	4.11758	5.9932	0.00744693	1.00366e-4	0.0772645	0.00904854
chr11	46747574	46747674	4947722	0	-	0.38	(0.378,0.408]	chr11	463626	26	INTRON	INTRON	CKAP5	ENSG00000175216.15	ENST00000529230.6:ENST00000312055.9:ENST00000354558.7:ENST00000533413.5:ENST00000525896.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	49	2	3.1136	4.11744	5.12128	0.00443339	0.00251746	0.061054	0.0446195
chr9	123902505	123902605	4345750	0	-	0.41	(0.408,0.44]	chr9	399137	231	INTRON	INTRON	DENND1A	ENSG00000119522.17	ENST00000373624.6:ENST00000394215.7:ENST00000373620.7:ENST00000373618.1	protein_coding	protein_coding	protein_coding	protein_coding	1	52	2	3.71874	4.11739	4.51604	0.0137419	3.17998e-4	0.0949306	0.0159645
chr7	64912060	64912160	3321176	0	+	0.46	(0.44,0.476]	chr7	308781	83	INTRON	INTRON	ZNF273	ENSG00000198039.12	ENST00000527278.5:ENST00000489672.5:ENST00000476120.2:ENST00000395375.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	50	2	2.74372	4.117345	5.49097	0.0153007	4.8612e-4	0.108569	0.0203841
chr1	28919370	28919470	59004	0	+	0.38	(0.378,0.408]	chr1	7621	42	INTRON	INTRON	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000647918.1:ENST00000646800.1:ENST00000644342.1:ENST00000646189.1:ENST00000482464.6:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000646260.1:ENST00000373798.5:ENST00000644600.1:ENST00000649674.1:ENST00000643173.1:ENST00000343067.9:ENST00000644780.1:ENST00000650265.1:ENST00000648181.1:ENST00000643604.1:ENST00000648891.1:ENST00000373797.2:ENST00000349460.9:ENST00000645184.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	24	2	3.82294	4.117315	4.41169	0.044228	0.0199606	0.162255	0.109608
chr10	74638786	74638886	4460658	0	+	0.4	(0.378,0.408]	chr10	411605	379	INTRON	INTRON	ADK	ENSG00000156110.15	ENST00000672429.1:ENST00000539909.6:ENST00000286621.7:ENST00000673352.1:ENST00000673310.1:ENST00000672920.1:ENST00000672394.1:ENST00000372734.5:ENST00000673027.1:ENST00000541550.6:ENST00000672604.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	24	2	3.82294	4.117315	4.41169	0.044228	0.0199606	0.162255	0.109608
chr12	12557417	12557515	5272178	0	-	0.387755	(0.378,0.408]	chr12	502496	24	INTRON	INTRON	DUSP16	ENSG00000111266.9	ENST00000298573.9:ENST00000228862.3:ENST00000539940.1:ENST00000541207.1:ENST00000536236.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	24	2	3.82294	4.117315	4.41169	0.044228	0.0199606	0.162255	0.109608
chr14	45090872	45090971	5714591	0	+	0.383838	(0.378,0.408]	chr14	542462	27	INTRON	INTRON	PRPF39	ENSG00000185246.18	ENST00000553605.1:ENST00000355765.11:ENST00000477626.5:ENST00000556782.5:ENST00000424478.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	24	2	3.82294	4.117315	4.41169	0.044228	0.0199606	0.162255	0.109608
chr15	79870423	79870523	6240633	0	-	0.38	(0.378,0.408]	chr15	595749	246	INTRON	INTRON	MTHFS:ST20-MTHFS	ENSG00000136371.11:ENSG00000259332.3	ENST00000258874.4:ENST00000559722.2:ENST00000615374.5:ENST00000479961.1:ENST00000494999.1	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	3.82294	4.117315	4.41169	0.044228	0.0199606	0.162255	0.109608
chr16	30857917	30858017	6474551	0	-	0.4	(0.378,0.408]	chr16	625961	52	INTRON	INTRON	BCL7C	ENSG00000099385.12	ENST00000380317.8:ENST00000574418.5:ENST00000572628.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	24	2	3.82294	4.117315	4.41169	0.044228	0.0199606	0.162255	0.109608
chr2	170055984	170056084	910470	0	+	0.38	(0.378,0.408]	chr2	100429	4	SS5_PROX	SS5_PROX:INTRON	UBR3	ENSG00000144357.18	ENST00000272793.11:ENST00000430321.5:ENST00000392632.6:ENST00000439681.1:ENST00000444475.5:ENST00000474426.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	24	2	3.82294	4.117315	4.41169	0.044228	0.0199606	0.162255	0.109608
chr5	151472498	151472594	2521574	0	+	0.395833	(0.378,0.408]	chr5	241237	17	INTRON	INTRON	SLC36A1	ENSG00000123643.13	ENST00000520701.5:ENST00000243389.8:ENST00000616007.4:ENST00000521925.5	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	3.82294	4.117315	4.41169	0.044228	0.0199606	0.162255	0.109608
chr6	150199954	150200054	2997345	0	+	0.4	(0.378,0.408]	chr6	280443	561	INTRON	INTRON	PPP1R14C	ENSG00000198729.5	ENST00000361131.5	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	3.82294	4.117315	4.41169	0.044228	0.0199606	0.162255	0.109608
chr5	146471976	146472076	2515757	0	+	0.29	(0.28,0.32]	chr5	240337	4	SS5_PROX	SS5_PROX:INTRON	TCERG1	ENSG00000113649.13	ENST00000507175.5:ENST00000296702.9:ENST00000679501.2:ENST00000394421.7:ENST00000549332.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	57	2	3.43186	4.117205	4.80255	0.0137406	0.00160646	0.0949306	0.0367961
chr1	2285806	2285905	2742	0	+	0.464646	(0.44,0.476]	chr1	557	374	INTRON	INTRON	SKI	ENSG00000157933.10	ENST00000378536.5:ENST00000508416.1:ENST00000478223.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	23	2	4.01038	4.117155	4.22393	0.0433743	0.0162322	0.148082	0.109464
chr1	11187778	11187878	377759	0	-	0.45	(0.44,0.476]	chr1	44235	199	INTRON	INTRON	MTOR	ENSG00000198793.13	ENST00000361445.9	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	4.01038	4.117155	4.22393	0.0433743	0.0162322	0.148082	0.109464
chr1	51784958	51785053	101108	0	+	0.473684	(0.44,0.476]	chr1	13392	5	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	OSBPL9	ENSG00000117859.19	ENST00000371714.5:ENST00000428468.6:ENST00000447887.5:ENST00000495776.5:ENST00000435274.6:ENST00000453295.5:ENST00000531828.5:ENST00000361556.9:ENST00000462759.5:ENST00000486942.5:ENST00000475697.5:ENST00000531819.5:ENST00000625138.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	23	2	4.01038	4.117155	4.22393	0.0433743	0.0162322	0.148082	0.109464
chr1	109416862	109416962	521216	0	-	0.47	(0.44,0.476]	chr1	61255	11	INTRON	INTRON	PSMA5	ENSG00000143106.13	ENST00000271308.9:ENST00000490870.5:ENST00000538610.5:ENST00000484563.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	23	2	4.01038	4.117155	4.22393	0.0433743	0.0162322	0.148082	0.109464
chr1	155770371	155770468	563560	0	-	0.463918	(0.44,0.476]	chr1	67280	25	INTRON	INTRON	GON4L	ENSG00000116580.20	ENST00000368331.6:ENST00000615926.4:ENST00000437809.5:ENST00000271883.9:ENST00000361040.9:ENST00000622608.2:ENST00000471341.5:ENST00000497369.5:ENST00000490801.1:ENST00000496021.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	23	2	4.01038	4.117155	4.22393	0.0433743	0.0162322	0.148082	0.109464
chr10	74084511	74084610	4455378	0	+	0.454545	(0.44,0.476]	chr10	411437	6	INTRON	INTRON	VCL	ENSG00000035403.18	ENST00000623461.3:ENST00000372755.7:ENST00000624354.3:ENST00000211998.10:ENST00000478896.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	23	2	4.01038	4.117155	4.22393	0.0433743	0.0162322	0.148082	0.109464
chr11	66052795	66052872	4807667	0	+	0.467532	(0.44,0.476]	chr11	447240	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SF3B2	ENSG00000087365.16	ENST00000528302.5:ENST00000322535.11:ENST00000533595.5:ENST00000524627.5:ENST00000531041.1:ENST00000531589.5:ENST00000530322.5:ENST00000524475.1:ENST00000533421.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	23	2	4.01038	4.117155	4.22393	0.0433743	0.0162322	0.148082	0.109464
chr12	122872357	122872457	5442339	0	-	0.45	(0.44,0.476]	chr12	520621	14	EXON_MRNA	EXON_MRNA:INTRON	VPS37B:ENSG00000280138	ENSG00000139722.7:ENSG00000280138.1	ENST00000267202.7:ENST00000535765.5:ENST00000371248.3:ENST00000623210.1	protein_coding	protein_coding	protein_coding:TEC	protein_coding:TEC	0	23	2	4.01038	4.117155	4.22393	0.0433743	0.0162322	0.148082	0.109464
chr13	49449352	49449452	5489885	0	+	0.46	(0.44,0.476]	chr13	525829	35	INTRON	INTRON	SETDB2	ENSG00000136169.17	ENST00000611815.2:ENST00000354234.8	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	4.01038	4.117155	4.22393	0.0433743	0.0162322	0.148082	0.109464
chr15	57971524	57971624	6186584	0	-	0.46	(0.44,0.476]	chr15	589736	53	INTRON	INTRON	ALDH1A2	ENSG00000128918.15	ENST00000537372.5:ENST00000249750.9:ENST00000347587.7:ENST00000430119.6:ENST00000558231.5:ENST00000559517.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	23	2	4.01038	4.117155	4.22393	0.0433743	0.0162322	0.148082	0.109464
chr17	63660291	63660390	6660570	0	+	0.444444	(0.44,0.476]	chr17	649861	20	INTRON	INTRON	MAP3K3	ENSG00000198909.8	ENST00000579585.5:ENST00000361733.8:ENST00000584573.5:ENST00000361357.7:ENST00000577395.5:ENST00000577597.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	23	2	4.01038	4.117155	4.22393	0.0433743	0.0162322	0.148082	0.109464
chr19	29997902	29998002	7048120	0	+	0.47	(0.44,0.476]	chr19	702695	111	INTRON	INTRON	URI1	ENSG00000105176.18	ENST00000360605.8:ENST00000574233.5:ENST00000392271.6:ENST00000574110.5:ENST00000574666.5:ENST00000576442.1:ENST00000570704.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	23	2	4.01038	4.117155	4.22393	0.0433743	0.0162322	0.148082	0.109464
chr2	143721005	143721105	1236032	0	-	0.47	(0.44,0.476]	chr2	131494	382	INTRON	INTRON	ENSG00000257277	ENSG00000257277.2	ENST00000552220.1	lncRNA	lncRNA	lncRNA	lncRNA	0	23	2	4.01038	4.117155	4.22393	0.0433743	0.0162322	0.148082	0.109464
chr22	19808536	19808634	7555160	0	-	0.469388	(0.44,0.476]	chr22	772425	14	INTRON	INTRON	GNB1L	ENSG00000185838.14	ENST00000329517.11:ENST00000403325.5:ENST00000405009.5:ENST00000460402.5:ENST00000481086.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	23	2	4.01038	4.117155	4.22393	0.0433743	0.0162322	0.148082	0.109464
chr22	38735075	38735174	7588981	0	-	0.444444	(0.44,0.476]	chr22	776916	19	UTR3	UTR3:EXON_MRNA	SUN2	ENSG00000100242.16	ENST00000690927.1:ENST00000405510.5:ENST00000689035.1:ENST00000405018.5	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	4.01038	4.117155	4.22393	0.0433743	0.0162322	0.148082	0.109464
chr22	40211327	40211427	7518518	0	+	0.46	(0.44,0.476]	chr22	768108	328	INTRON	INTRON	TNRC6B	ENSG00000100354.21	ENST00000301923.13:ENST00000402203.5:ENST00000454349.7:ENST00000489500.1:ENST00000335727.13	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	23	2	4.01038	4.117155	4.22393	0.0433743	0.0162322	0.148082	0.109464
chr22	46268984	46269041	7533205	0	+	0.45614	(0.44,0.476]	chr22	770197	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TTC38	ENSG00000075234.17	ENST00000417709.5:ENST00000381031.8:ENST00000421359.5:ENST00000629918.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	23	2	4.01038	4.117155	4.22393	0.0433743	0.0162322	0.148082	0.109464
chr3	138172410	138172508	1828587	0	-	0.469388	(0.44,0.476]	chr3	183786	3	INTRON	INTRON	DBR1	ENSG00000138231.13	ENST00000260803.9:ENST00000477557.3:ENST00000463982.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	23	2	4.01038	4.117155	4.22393	0.0433743	0.0162322	0.148082	0.109464
chr3	186566766	186566866	1887495	0	-	0.45	(0.44,0.476]	chr3	188793	1	SS5_PROX	SS5_PROX:INTRON	TBCCD1	ENSG00000113838.13	ENST00000338733.10:ENST00000424280.5:ENST00000446782.5:ENST00000413695.1	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	4.01038	4.117155	4.22393	0.0433743	0.0162322	0.148082	0.109464
chr4	152530753	152530850	2275037	0	-	0.463918	(0.44,0.476]	chr4	221125	6	EXON_LNCRNA	EXON_LNCRNA:INTRON	FBXW7	ENSG00000109670.16	ENST00000281708.10:ENST00000603548.6:ENST00000604872.6:ENST00000647166.1:ENST00000643834.1:ENST00000642901.1:ENST00000604095.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	23	2	4.01038	4.117155	4.22393	0.0433743	0.0162322	0.148082	0.109464
chr5	96707489	96707588	2434041	0	+	0.454545	(0.44,0.476]	chr5	233770	37	INTRON	INTRON	CAST	ENSG00000153113.24	ENST00000505143.5:ENST00000675107.1:ENST00000338252.7:ENST00000508830.5:ENST00000511097.6:ENST00000395812.6:ENST00000674702.1:ENST00000675179.1:ENST00000507487.5:ENST00000674984.1:ENST00000421689.6:ENST00000512620.5:ENST00000514845.5:ENST00000675663.1:ENST00000508608.6:ENST00000514055.5:ENST00000506811.5:ENST00000675267.1:ENST00000341926.7:ENST00000675266.1:ENST00000505402.1:ENST00000675614.1:ENST00000395813.5:ENST00000511049.5:ENST00000675858.1:ENST00000309190.9:ENST00000510156.5:ENST00000508117.6:ENST00000674587.1:ENST00000504465.5:ENST00000511782.5:ENST00000509903.5:ENST00000504221.5:ENST00000675033.1:ENST00000513666.5:ENST00000508197.1:ENST00000675479.1:ENST00000510756.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	23	2	4.01038	4.117155	4.22393	0.0433743	0.0162322	0.148082	0.109464
chr5	154225477	154225577	2524129	0	+	0.47	(0.44,0.476]	chr5	241463	51	INTRON	INTRON	GALNT10	ENSG00000164574.16	ENST00000425427.6:ENST00000297107.11:ENST00000520647.5:ENST00000377661.2:ENST00000521781.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	23	2	4.01038	4.117155	4.22393	0.0433743	0.0162322	0.148082	0.109464
chr6	4925401	4925501	2792355	0	+	0.46	(0.44,0.476]	chr6	263614	327	INTRON	INTRON	CDYL	ENSG00000153046.18	ENST00000328908.9:ENST00000440139.5:ENST00000397588.8:ENST00000472453.5:ENST00000449732.6:ENST00000343762.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	23	2	4.01038	4.117155	4.22393	0.0433743	0.0162322	0.148082	0.109464
chr6	7907417	7907516	3054005	0	-	0.474747	(0.44,0.476]	chr6	284048	23	INTRON	INTRON	TXNDC5	ENSG00000239264.9	ENST00000379757.9:ENST00000473453.2	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	4.01038	4.117155	4.22393	0.0433743	0.0162322	0.148082	0.109464
chr9	37319667	37319766	4119658	0	+	0.454545	(0.44,0.476]	chr9	375411	136	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000461038.5:ENST00000488607.5:ENST00000463625.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	23	2	4.01038	4.117155	4.22393	0.0433743	0.0162322	0.148082	0.109464
chr1	17409873	17409973	384678	0	-	0.55	(0.515,0.57]	chr1	45439	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	RCC2	ENSG00000179051.14	ENST00000375436.9:ENST00000375433.3	protein_coding	protein_coding	protein_coding	protein_coding	1	44	2	3.19178	4.117015	5.04225	0.00289534	0.00131841	0.0494641	0.0331539
chr3	43412822	43412922	1673341	0	-	0.53	(0.515,0.57]	chr3	170966	396	INTRON	INTRON	ANO10	ENSG00000160746.13	ENST00000292246.8:ENST00000350459.8:ENST00000396091.7:ENST00000414522.6:ENST00000451430.6:ENST00000448045.1	protein_coding	protein_coding	protein_coding	protein_coding	1	44	2	3.19178	4.117015	5.04225	0.00289534	0.00131841	0.0494641	0.0331539
chr1	51833219	51833318	454833	0	-	0.444444	(0.44,0.476]	chr1	54596	50	INTRON	INTRON	NRDC	ENSG00000078618.23	ENST00000354831.11:ENST00000539524.5:ENST00000352171.12:ENST00000485608.5:ENST00000473805.5:ENST00000475715.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	23	2	4.1054	4.1169150000000005	4.12843	0.0337192	0.0220205	0.134145	0.123836
chr11	3125481	3125579	4893015	0	-	0.459184	(0.44,0.476]	chr11	458608	27	INTRON	INTRON	OSBPL5	ENSG00000021762.20	ENST00000263650.12:ENST00000389989.7:ENST00000525498.5:ENST00000471998.6:ENST00000348039.9:ENST00000534491.5:ENST00000459995.5:ENST00000533234.5:ENST00000465323.1:ENST00000477622.1:ENST00000526122.5:ENST00000530372.5:ENST00000533721.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	23	2	4.1054	4.1169150000000005	4.12843	0.0337192	0.0220205	0.134145	0.123836
chr12	11031143	11031235	5268100	0	-	0.456522	(0.44,0.476]	chr12	502230	8	CDS	CDS:EXON_MRNA:INTRON	ENSG00000275778:PRH1:TAS2R31	ENSG00000275778.2:ENSG00000231887.8:ENSG00000256436.1	ENST00000536668.2:ENST00000535024.6:ENST00000539853.5:ENST00000541977.5:ENST00000536086.2:ENST00000534923.1:ENST00000541456.1:ENST00000390675.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	23	2	4.1054	4.1169150000000005	4.12843	0.0337192	0.0220205	0.134145	0.123836
chr15	64079211	64079311	6202657	0	-	0.46	(0.44,0.476]	chr15	591577	33	INTRON	INTRON	CIAO2A	ENSG00000166797.11	ENST00000300030.8:ENST00000380290.7:ENST00000559705.1:ENST00000557835.5:ENST00000559950.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	23	2	4.1054	4.1169150000000005	4.12843	0.0337192	0.0220205	0.134145	0.123836
chr15	64640880	64640980	6045894	0	+	0.47	(0.44,0.476]	chr15	575702	175	INTRON	INTRON	ZNF609	ENSG00000180357.10	ENST00000326648.5:ENST00000558680.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	23	2	4.1054	4.1169150000000005	4.12843	0.0337192	0.0220205	0.134145	0.123836
chr16	17998510	17998610	6452617	0	-	0.47	(0.44,0.476]	chr16	621956	261	INTRON	INTRON	ENSG00000259929	ENSG00000259929.5	ENST00000567304.1	lncRNA	lncRNA	lncRNA	lncRNA	0	23	2	4.1054	4.1169150000000005	4.12843	0.0337192	0.0220205	0.134145	0.123836
chr16	29487616	29487710	6470425	0	-	0.457447	(0.44,0.476]	chr16	625097	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ENSG00000288632:NPIPB12	ENSG00000288632.1:ENSG00000169203.17	ENST00000675579.1:ENST00000550665.5:ENST00000549733.5:ENST00000551448.5:ENST00000552123.1:ENST00000617311.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:nonsense_mediated_decay:lncRNA	0	23	2	4.1054	4.1169150000000005	4.12843	0.0337192	0.0220205	0.134145	0.123836
chr16	46968862	46968961	6479883	0	-	0.444444	(0.44,0.476]	chr16	626870	3	INTRON	INTRON	DNAJA2	ENSG00000069345.12	ENST00000317089.10:ENST00000563158.1:ENST00000617000.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	23	2	4.1054	4.1169150000000005	4.12843	0.0337192	0.0220205	0.134145	0.123836
chr16	67240450	67240550	6503714	0	-	0.46	(0.44,0.476]	chr16	629401	6	INTRON	INTRON	FHOD1	ENSG00000135723.14	ENST00000258201.9:ENST00000567752.5:ENST00000561922.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	23	2	4.1054	4.1169150000000005	4.12843	0.0337192	0.0220205	0.134145	0.123836
chr19	19191281	19191381	7154194	0	-	0.47	(0.44,0.476]	chr19	723175	39	INTRON	INTRON	BORCS8	ENSG00000254901.8	ENST00000488252.6:ENST00000462790.8:ENST00000585679.1:ENST00000494489.6:ENST00000477565.3:ENST00000462498.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	23	2	4.1054	4.1169150000000005	4.12843	0.0337192	0.0220205	0.134145	0.123836
chr2	33036701	33036801	736358	0	+	0.47	(0.44,0.476]	chr2	84882	151	INTRON	INTRON	LTBP1	ENSG00000049323.16	ENST00000404816.7	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	4.1054	4.1169150000000005	4.12843	0.0337192	0.0220205	0.134145	0.123836
chr2	97855516	97855616	1185383	0	-	0.46	(0.44,0.476]	chr2	127283	109	INTRON	INTRON	TMEM131	ENSG00000075568.17	ENST00000186436.10:ENST00000418629.6:ENST00000438715.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	23	2	4.1054	4.1169150000000005	4.12843	0.0337192	0.0220205	0.134145	0.123836
chr2	135143930	135144029	873603	0	+	0.454545	(0.44,0.476]	chr2	97825	73	INTRON	INTRON	RAB3GAP1	ENSG00000115839.19	ENST00000539493.3:ENST00000688088.1:ENST00000693554.1:ENST00000690785.1:ENST00000689880.1:ENST00000264158.13:ENST00000690208.1:ENST00000691478.1:ENST00000686114.1:ENST00000685967.1:ENST00000442034.5:ENST00000687199.1:ENST00000691339.1:ENST00000688182.1:ENST00000487003.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	23	2	4.1054	4.1169150000000005	4.12843	0.0337192	0.0220205	0.134145	0.123836
chr3	12572573	12572673	1368037	0	+	0.47	(0.44,0.476]	chr3	144091	2	SS5_PROX	SS5_PROX:INTRON	MKRN2	ENSG00000075975.17	ENST00000677816.1:ENST00000677941.1:ENST00000676544.1:ENST00000677237.1:ENST00000679143.1:ENST00000676701.1:ENST00000170447.12:ENST00000411987.5:ENST00000448482.1:ENST00000677142.1:ENST00000676541.1:ENST00000677798.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	23	2	4.1054	4.1169150000000005	4.12843	0.0337192	0.0220205	0.134145	0.123836
chr3	185761796	185761896	1885716	0	-	0.46	(0.44,0.476]	chr3	188573	631	INTRON	INTRON	IGF2BP2	ENSG00000073792.16	ENST00000382199.7:ENST00000346192.7:ENST00000457616.6:ENST00000421047.3:ENST00000461957.5:ENST00000493302.5:ENST00000466476.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	23	2	4.1054	4.1169150000000005	4.12843	0.0337192	0.0220205	0.134145	0.123836
chr5	43037140	43037239	2613853	0	-	0.464646	(0.44,0.476]	chr5	248459	185	INTRON	INTRON	ENSG00000177738	ENSG00000177738.5	ENST00000503152.2:ENST00000665537.1	lncRNA	lncRNA	lncRNA	lncRNA	0	23	2	4.1054	4.1169150000000005	4.12843	0.0337192	0.0220205	0.134145	0.123836
chr5	54146884	54146984	2619278	0	-	0.45	(0.44,0.476]	chr5	248848	331	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2:ENST00000505630.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	23	2	4.1054	4.1169150000000005	4.12843	0.0337192	0.0220205	0.134145	0.123836
chr5	82153910	82154009	2404526	0	+	0.454545	(0.44,0.476]	chr5	232134	59	INTRON	INTRON	ATG10	ENSG00000152348.16	ENST00000282185.8:ENST00000458350.7:ENST00000504770.5:ENST00000513634.1:ENST00000508814.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	23	2	4.1054	4.1169150000000005	4.12843	0.0337192	0.0220205	0.134145	0.123836
chr6	15372516	15372616	2824212	0	+	0.45	(0.44,0.476]	chr6	265192	576	INTRON	INTRON	JARID2	ENSG00000008083.14	ENST00000341776.7:ENST00000397311.4	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	4.1054	4.1169150000000005	4.12843	0.0337192	0.0220205	0.134145	0.123836
chr6	34648880	34648979	3085739	0	-	0.444444	(0.44,0.476]	chr6	288685	17	INTRON	INTRON	ILRUN	ENSG00000196821.10	ENST00000374026.7:ENST00000374023.8:ENST00000374021.1	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	4.1054	4.1169150000000005	4.12843	0.0337192	0.0220205	0.134145	0.123836
chr6	36096861	36096960	2853758	0	+	0.464646	(0.44,0.476]	chr6	269667	9	UTR3	UTR3:EXON_MRNA:INTRON	MAPK14	ENSG00000112062.11	ENST00000229795.7:ENST00000468133.5:ENST00000229794.9:ENST00000310795.8:ENST00000491957.5:ENST00000496250.5:ENST00000474429.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	23	2	4.1054	4.1169150000000005	4.12843	0.0337192	0.0220205	0.134145	0.123836
chr7	23373344	23373444	3502689	0	-	0.46	(0.44,0.476]	chr7	326877	103	INTRON	INTRON	IGF2BP3	ENSG00000136231.14	ENST00000258729.8:ENST00000421467.6:ENST00000468263.5:ENST00000492771.5:ENST00000479504.5:ENST00000466809.6:ENST00000491719.5:ENST00000465058.5:ENST00000469723.5:ENST00000474105.5:ENST00000476938.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	23	2	4.1054	4.1169150000000005	4.12843	0.0337192	0.0220205	0.134145	0.123836
chr7	75391478	75391578	3337986	0	+	0.47	(0.44,0.476]	chr7	310764	17	INTRON	INTRON	STAG3L1	ENSG00000205583.14	ENST00000619870.4:ENST00000404291.3	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	23	2	4.1054	4.1169150000000005	4.12843	0.0337192	0.0220205	0.134145	0.123836
chr7	135378312	135378411	3647629	0	-	0.464646	(0.44,0.476]	chr7	339120	139	INTRON	INTRON	CNOT4	ENSG00000080802.20	ENST00000541284.6:ENST00000451834.5:ENST00000423368.6:ENST00000361528.8:ENST00000473470.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	23	2	4.1054	4.1169150000000005	4.12843	0.0337192	0.0220205	0.134145	0.123836
chr7	158928121	158928218	3456871	0	+	0.463918	(0.44,0.476]	chr7	323247	7	INTRON	INTRON	DYNC2I1	ENSG00000126870.16	ENST00000407559.8:ENST00000444851.5:ENST00000467220.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	23	2	4.1054	4.1169150000000005	4.12843	0.0337192	0.0220205	0.134145	0.123836
chr8	141235632	141235732	4080392	0	-	0.46	(0.44,0.476]	chr8	370653	54	INTRON	INTRON	SLC45A4	ENSG00000022567.10	ENST00000517878.6:ENST00000520137.1	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	4.1054	4.1169150000000005	4.12843	0.0337192	0.0220205	0.134145	0.123836
chrX	48938343	48938442	7815879	0	-	0.454545	(0.44,0.476]	chrX	796860	16	INTRON	INTRON	OTUD5	ENSG00000068308.15	ENST00000376488.8:ENST00000396743.7:ENST00000455452.5:ENST00000156084.8:ENST00000428668.2:ENST00000484499.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	23	2	4.1054	4.1169150000000005	4.12843	0.0337192	0.0220205	0.134145	0.123836
chrX	150893026	150893126	7908346	0	-	0.45	(0.44,0.476]	chrX	804761	614	INTRON	INTRON	CD99L2	ENSG00000102181.21	ENST00000370377.8:ENST00000346693.8:ENST00000437787.6:ENST00000613030.4:ENST00000355149.8:ENST00000466436.5:ENST00000491877.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	23	2	4.1054	4.1169150000000005	4.12843	0.0337192	0.0220205	0.134145	0.123836
chr11	63691066	63691166	4800009	0	+	0.31	(0.28,0.32]	chr11	444936	89	INTRON	INTRON	RTN3	ENSG00000133318.14	ENST00000341307.6:ENST00000356000.7:ENST00000542238.5:ENST00000538995.1:ENST00000339997.8:ENST00000540798.5:ENST00000537981.5:ENST00000377819.10:ENST00000536011.5:ENST00000543123.1:ENST00000543552.5:ENST00000545432.5:ENST00000338850.5:ENST00000354497.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	84	2	2.05458	4.11661	6.17864	0.0381508	1.96985e-5	0.141764	0.00342171
chr12	122231847	122231947	5439759	0	-	0.5	(0.476,0.515]	chr12	520202	24	UTR3	UTR3:EXON_MRNA	VPS33A	ENSG00000139719.11	ENST00000267199.9:ENST00000544349.6:ENST00000643696.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	55	2	3.53362	4.1164000000000005	4.69918	0.00400966	0.00102391	0.057767	0.029231300000000002
chr6	143189021	143189120	2976474	0	+	0.383838	(0.378,0.408]	chr6	279160	15	UTR3	UTR3:EXON_MRNA:INTRON	AIG1	ENSG00000146416.19	ENST00000367601.8:ENST00000447498.5:ENST00000646199.1:ENST00000357847.9:ENST00000629020.2:ENST00000275235.8:ENST00000494282.6:ENST00000458219.1	protein_coding	protein_coding	protein_coding	protein_coding	13	542	2	3.64543	4.116350000000001	4.58727	1.79989e-8	3.98876e-9	4.88319e-5	1.45432e-5
chr13	60073264	60073363	5603466	0	-	0.424242	(0.408,0.44]	chr13	535529	301	INTRON	INTRON	DIAPH3	ENSG00000139734.19	ENST00000400324.9:ENST00000377908.6:ENST00000400319.5:ENST00000400320.5:ENST00000267215.8	protein_coding	protein_coding	protein_coding	protein_coding	1	52	2	3.10641	4.116045	5.12568	0.00555646	7.90919e-4	0.0648867	0.0258324
chr17	82897873	82897972	6695693	0	+	0.585859	(0.57,1]	chr17	654985	15	INTRON	INTRON	TBCD	ENSG00000141556.22	ENST00000682479.1:ENST00000682722.1:ENST00000684464.1:ENST00000684544.1:ENST00000681983.1:ENST00000684361.1:ENST00000683184.1:ENST00000683282.1:ENST00000684408.1:ENST00000355528.9:ENST00000683444.1:ENST00000684776.1:ENST00000683041.1:ENST00000684760.1:ENST00000684349.1:ENST00000682213.1:ENST00000683009.1:ENST00000682921.1:ENST00000539345.6:ENST00000684000.1:ENST00000684188.1:ENST00000684429.1:ENST00000682610.1:ENST00000683821.1:ENST00000682654.1:ENST00000576160.6:ENST00000571712.5:ENST00000576996.5:ENST00000574801.5:ENST00000683584.1:ENST00000682099.1:ENST00000684559.1:ENST00000571316.5:ENST00000576760.5:ENST00000572984.5:ENST00000683839.1:ENST00000574975.5:ENST00000572953.5:ENST00000571796.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	33	2	3.02967	4.1159099999999995	5.20215	0.00471306	8.28896e-5	0.0631419	0.00812487
chr10	119594973	119595069	4706017	0	-	0.40625	(0.378,0.408]	chr10	434252	11	INTRON	INTRON	TIAL1	ENSG00000151923.18	ENST00000369093.6:ENST00000436547.7:ENST00000489822.5:ENST00000497671.5:ENST00000479729.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	148	2	3.35676	4.11586	4.87496	2.33175e-4	3.29101e-7	0.013966	2.89621e-4
chr2	161334642	161334742	901374	0	+	0.35	(0.32,0.35]	chr2	99704	154	INTRON	INTRON	PSMD14	ENSG00000115233.12	ENST00000409682.8:ENST00000437630.1	protein_coding	protein_coding	protein_coding	protein_coding	1	57	2	2.9451	4.1157	5.2863	0.011051	7.56575e-4	0.0873897	0.0251966
chr9	112229353	112229448	4316907	0	-	0.515789	(0.515,0.57]	chr9	397022	5	INTRON	INTRON	PTBP3	ENSG00000119314.16	ENST00000334318.10:ENST00000458258.5:ENST00000374257.6:ENST00000374255.6:ENST00000343327.6	protein_coding	protein_coding	protein_coding	protein_coding	2	60	2	3.12673	4.1156049999999995	5.10448	0.0010345	3.95089e-4	0.029231300000000002	0.0178567
chr2	26286759	26286858	714593	0	+	0.40404	(0.378,0.408]	chr2	82557	8	INTRON	INTRON	HADHB	ENSG00000138029.14	ENST00000537713.5:ENST00000405867.7:ENST00000317799.10:ENST00000494615.1:ENST00000545822.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	79	2	2.63629	4.1155550000000005	5.59482	0.001315	4.23783e-4	0.0333932	0.0189958
chr15	83883305	83883405	6086013	0	+	0.52	(0.515,0.57]	chr15	579169	120	INTRON	INTRON	ADAMTSL3	ENSG00000156218.13	ENST00000567476.1:ENST00000561483.5:ENST00000286744.10:ENST00000567663.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	44	2	3.12663	4.115555	5.10448	0.00374498	0.0010345	0.0562234	0.029231300000000002
chr16	8912991	8913088	6442228	0	-	0.536082	(0.515,0.57]	chr16	620520	18	INTRON	INTRON	USP7	ENSG00000187555.16	ENST00000673704.1:ENST00000344836.9:ENST00000563961.5:ENST00000381886.8:ENST00000565455.5:ENST00000563085.5:ENST00000542333.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	44	2	3.12663	4.115555	5.10448	0.00374498	0.0010345	0.0562234	0.029231300000000002
chr20	33655790	33655880	7328869	0	-	0.522222	(0.515,0.57]	chr20	746349	2	EXON_LNCRNA	EXON_LNCRNA	ENSG00000275223	ENSG00000275223.1	ENST00000621597.1	lncRNA	lncRNA	lncRNA	lncRNA	1	44	2	3.12663	4.115555	5.10448	0.00374498	0.0010345	0.0562234	0.029231300000000002
chr11	119023282	119023320	4874220	0	+	0.578947	(0.57,1]	chr11	455438	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	TRAPPC4	ENSG00000196655.12	ENST00000533058.5:ENST00000533632.6:ENST00000359005.8:ENST00000531290.5:ENST00000434101.6:ENST00000525303.5:ENST00000528230.5:ENST00000525079.5:ENST00000533012.1:ENST00000533149.1:ENST00000524797.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	33	2	3.183	4.11555	5.0481	0.00254356	1.32594e-4	0.0448135	0.00992554
chr7	883149	883247	3269175	0	+	0.704082	(0.57,1]	chr7	303674	45	INTRON	INTRON	SUN1:GET4	ENSG00000164828.18:ENSG00000239857.7	ENST00000457861.1:ENST00000265857.8:ENST00000412734.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	33	2	3.183	4.11555	5.0481	0.00254356	1.32594e-4	0.0448135	0.00992554
chr21	10443144	10443244	7368426	0	+	0.31	(0.28,0.32]	chr21	751975	279	INTRON	INTRON	BAGE2	ENSG00000187172.15	ENST00000474011.5:ENST00000470054.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	1	55	2	3.07744	4.1155100000000004	5.15358	0.00604536	0.0052282	0.0700813	0.0633615
chr13	27074101	27074199	5565583	0	-	0.581633	(0.57,1]	chr13	531998	26	INTRON	INTRON	USP12	ENSG00000152484.14	ENST00000282344.11	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	3.2676	4.11548	4.96336	0.00176203	2.05554e-4	0.0376652	0.0124557
chr8	129293951	129294051	4058197	0	-	0.45	(0.44,0.476]	chr8	369535	88	INTRON	INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000657400.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1	lncRNA	lncRNA	lncRNA	lncRNA	2	71	2	2.88062	4.11547	5.35032	0.001878	3.02713e-4	0.039073	0.0155054
chr1	176114327	176114426	590774	0	-	0.313131	(0.28,0.32]	chr1	70920	281	INTRON	INTRON	COP1	ENSG00000143207.21	ENST00000367669.8:ENST00000367667.5:ENST00000367666.5:ENST00000649803.1:ENST00000308769.12:ENST00000459744.5:ENST00000498306.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	55	2	3.02632	4.115460000000001	5.2046	0.0071944	0.00448664	0.0756118	0.0593175
chr18	9218585	9218684	6869758	0	+	0.222222	[0,0.28]	chr18	680605	13	INTRON	INTRON	ANKRD12	ENSG00000101745.17	ENST00000262126.9:ENST00000540578.6:ENST00000400020.7:ENST00000546007.6:ENST00000359158.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	98	2	2.53226	4.115460000000001	5.69866	0.00306159	0.00175225	0.0509893	0.0376491
chr1	50927379	50927479	451927	0	-	0.5	(0.476,0.515]	chr1	54267	690	INTRON	INTRON	FAF1	ENSG00000185104.21	ENST00000396153.7:ENST00000487898.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	50	2	2.73205	4.11536	5.49867	0.0159328	4.28561e-4	0.109464	0.0189958
chr1	8772720	8772820	373335	0	-	0.47	(0.44,0.476]	chr1	43549	190	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000656437.1:ENST00000659924.1	protein_coding	protein_coding	protein_coding	protein_coding	5	98	2	2.25704	4.115285	5.97353	0.0018274	5.52284e-5	0.0396683	0.00651834
chr17	12996885	12996985	6726261	0	-	0.35	(0.32,0.35]	chr17	660047	2	SS3_PROX	SS3_PROX:INTRON	ELAC2	ENSG00000006744.19	ENST00000338034.9:ENST00000484122.5:ENST00000480891.5:ENST00000395962.6:ENST00000487229.6:ENST00000465825.5:ENST00000426905.7:ENST00000584650.5:ENST00000491478.5:ENST00000492559.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	55	2	2.64129	4.11526	5.58923	0.0222819	8.12357e-4	0.124303	0.0263656
chr5	179701894	179701992	2560715	0	+	0.581633	(0.57,1]	chr5	244866	5	INTRON	INTRON	CANX	ENSG00000127022.16	ENST00000681674.1:ENST00000681712.1:ENST00000681903.1:ENST00000680406.1:ENST00000502296.6:ENST00000504734.5:ENST00000452673.6:ENST00000679719.1:ENST00000679523.1:ENST00000679395.1:ENST00000681504.1:ENST00000679642.1:ENST00000681894.1:ENST00000680504.1:ENST00000681265.1:ENST00000680894.1:ENST00000680812.1:ENST00000680614.1:ENST00000680985.1:ENST00000680837.1:ENST00000680827.1:ENST00000681576.1:ENST00000680984.1:ENST00000680042.1:ENST00000681762.1:ENST00000502498.6:ENST00000681476.1:ENST00000681072.1:ENST00000247461.9:ENST00000513246.6:ENST00000680618.1:ENST00000502673.6:ENST00000680092.1:ENST00000506654.6:ENST00000514032.5:ENST00000681733.1:ENST00000679471.1:ENST00000679527.1:ENST00000680006.1:ENST00000681398.1:ENST00000681431.1:ENST00000680013.1:ENST00000681076.1:ENST00000681168.1:ENST00000509563.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	92	2	3.7199	4.11524	4.51058	1.01028e-6	6.02159e-7	6.234e-4	4.21585e-4
chr17	75216189	75216289	6674370	0	+	0.39	(0.378,0.408]	chr17	651373	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NUP85	ENSG00000125450.11	ENST00000245544.9:ENST00000583948.5:ENST00000579324.5:ENST00000449421.6:ENST00000581104.5:ENST00000579298.5:ENST00000583548.1:ENST00000577208.5:ENST00000578830.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	49	2	3.05393	4.1151	5.17627	0.00551532	0.00208234	0.0672816	0.0411801
chr2	152684512	152684611	1246187	0	-	0.313131	(0.28,0.32]	chr2	132338	28	INTRON	INTRON	PRPF40A	ENSG00000196504.20	ENST00000410080.8:ENST00000545856.8:ENST00000696382.1:ENST00000696381.1:ENST00000354363.11:ENST00000493468.7:ENST00000448428.2:ENST00000467114.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	74	2	2.67153	4.11499	5.55845	0.00436402	0.00141854	0.060356	0.0340865
chr14	31355368	31355467	5859681	0	-	0.444444	(0.44,0.476]	chr14	556867	43	INTRON	INTRON	HEATR5A:ENSG00000203546	ENSG00000129493.15:ENSG00000203546.7	ENST00000543095.7:ENST00000538864.6:ENST00000550366.5:ENST00000549185.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	48	2	3.2029	4.114965	5.02703	0.00308681	0.00278015	0.0510391	0.0469265
chr18	2725195	2725295	6865585	0	+	0.31	(0.28,0.32]	chr18	680055	2	SS5_PROX	SS5_PROX:INTRON	SMCHD1	ENSG00000101596.17	ENST00000320876.11:ENST00000688342.1:ENST00000693213.1:ENST00000577880.5:ENST00000584897.5:ENST00000583441.2:ENST00000690757.1:ENST00000581383.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	74	2	2.59504	4.11494	5.63484	0.00582473	0.00108324	0.0687439	0.0303015
chr1	28082037	28082137	408942	0	-	0.33	(0.32,0.35]	chr1	49222	236	INTRON	INTRON	EYA3	ENSG00000158161.16	ENST00000373871.8:ENST00000540618.5:ENST00000436342.6:ENST00000373863.3:ENST00000471498.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	25	2	3.77344	4.114865	4.45629	0.0596635	0.0246089	0.189982	0.12011
chr1	45920430	45920530	94985	0	+	0.33	(0.32,0.35]	chr1	12715	25	INTRON	INTRON	MAST2	ENSG00000086015.23	ENST00000361297.7:ENST00000372008.6:ENST00000674079.1	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	3.77344	4.114865	4.45629	0.0596635	0.0246089	0.189982	0.12011
chr1	165733800	165733900	575627	0	-	0.34	(0.32,0.35]	chr1	69834	53	INTRON	INTRON	TMCO1	ENSG00000143183.18	ENST00000612311.4:ENST00000367881.11:ENST00000580248.5:ENST00000464650.5:ENST00000476143.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	25	2	3.77344	4.114865	4.45629	0.0596635	0.0246089	0.189982	0.12011
chr10	27150037	27150137	4586248	0	-	0.35	(0.32,0.35]	chr10	422781	6	INTRON	INTRON	YME1L1	ENSG00000136758.20	ENST00000376016.8:ENST00000613434.4:ENST00000326799.7:ENST00000491542.6:ENST00000427324.5:ENST00000396296.7:ENST00000477432.1	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	3.77344	4.114865	4.45629	0.0596635	0.0246089	0.189982	0.12011
chr12	3614239	3614336	5256495	0	-	0.329897	(0.32,0.35]	chr12	500222	24	INTRON	INTRON	CRACR2A	ENSG00000130038.10	ENST00000333750.9	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	0	25	2	3.77344	4.114865	4.45629	0.0596635	0.0246089	0.189982	0.12011
chr15	89272086	89272184	6096024	0	+	0.336735	(0.32,0.35]	chr15	580129	32	INTRON	INTRON	FANCI	ENSG00000140525.20	ENST00000674831.1:ENST00000300027.12:ENST00000310775.12:ENST00000696717.1:ENST00000676003.1:ENST00000696718.1:ENST00000447611.6:ENST00000696719.1:ENST00000565522.5:ENST00000561894.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	25	2	3.77344	4.114865	4.45629	0.0596635	0.0246089	0.189982	0.12011
chr17	19239425	19239525	6570757	0	+	0.33	(0.32,0.35]	chr17	638928	15	INTRON	INTRON	EPN2	ENSG00000072134.16	ENST00000582015.5:ENST00000584707.5:ENST00000584633.1:ENST00000441293.2:ENST00000314728.10:ENST00000347697.6:ENST00000395618.7:ENST00000580579.5:ENST00000577692.5:ENST00000583197.5:ENST00000582659.5:ENST00000395628.6:ENST00000575595.5:ENST00000494192.6:ENST00000582234.5:ENST00000581024.5:ENST00000577244.5:ENST00000582969.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	25	2	3.77344	4.114865	4.45629	0.0596635	0.0246089	0.189982	0.12011
chr19	37094259	37094357	7059813	0	+	0.336735	(0.32,0.35]	chr19	704833	28	INTRON	INTRON	ZNF420	ENSG00000197050.11	ENST00000590332.1:ENST00000587029.5:ENST00000589461.5:ENST00000337995.4:ENST00000587082.5:ENST00000304239.11:ENST00000589245.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	25	2	3.77344	4.114865	4.45629	0.0596635	0.0246089	0.189982	0.12011
chr2	213539989	213540089	1005192	0	+	0.34	(0.32,0.35]	chr2	107765	495	INTRON	INTRON	SPAG16	ENSG00000144451.20	ENST00000406979.6:ENST00000452556.5:ENST00000331683.10:ENST00000451561.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	25	2	3.77344	4.114865	4.45629	0.0596635	0.0246089	0.189982	0.12011
chr3	69908034	69908134	1450067	0	+	0.35	(0.32,0.35]	chr3	152808	283	INTRON	INTRON	MITF	ENSG00000187098.18	ENST00000687384.1:ENST00000693031.1:ENST00000352241.9:ENST00000642352.1:ENST00000429090.5:ENST00000433517.5:ENST00000472437.5:ENST00000448226.9:ENST00000689390.1:ENST00000314589.10:ENST00000451708.5:ENST00000693549.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	25	2	3.77344	4.114865	4.45629	0.0596635	0.0246089	0.189982	0.12011
chr3	154291762	154291858	1843196	0	-	0.333333	(0.32,0.35]	chr3	185394	16	INTRON	INTRON	DHX36	ENSG00000174953.14	ENST00000496811.6:ENST00000308361.10:ENST00000329463.9:ENST00000481941.5:ENST00000469977.1:ENST00000481332.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	25	2	3.77344	4.114865	4.45629	0.0596635	0.0246089	0.189982	0.12011
chr9	97694849	97694947	4299938	0	-	0.346939	(0.32,0.35]	chr9	395376	7	INTRON	INTRON	XPA	ENSG00000136936.11	ENST00000375128.5:ENST00000462523.5:ENST00000496104.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	25	2	3.77344	4.114865	4.45629	0.0596635	0.0246089	0.189982	0.12011
chr9	124616707	124616807	4347669	0	-	0.33	(0.32,0.35]	chr9	399255	210	INTRON	INTRON	NR6A1	ENSG00000148200.17	ENST00000487099.7:ENST00000373584.7:ENST00000416460.6:ENST00000344523.8	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	3.77344	4.114865	4.45629	0.0596635	0.0246089	0.189982	0.12011
chr20	35390350	35390449	7334989	0	-	0.454545	(0.44,0.476]	chr20	747184	36	INTRON	INTRON	UQCC1	ENSG00000101019.22	ENST00000374380.6:ENST00000374394.7:ENST00000374384.6:ENST00000359226.6:ENST00000349714.9:ENST00000457259.5:ENST00000374385.10:ENST00000453855.5:ENST00000397556.7:ENST00000424405.5:ENST00000443429.5:ENST00000438533.5:ENST00000397554.5:ENST00000491125.5:ENST00000491040.5:ENST00000397553.6:ENST00000495752.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	48	2	3.08591	4.114845	5.14378	0.00481262	0.00184943	0.0638089	0.0388609
chr4	138180640	138180715	2245204	0	-	0.44	(0.408,0.44]	chr4	219462	1	CDS	CDS:UTR3:EXON_MRNA	SLC7A11	ENSG00000151012.13	ENST00000280612.9:ENST00000509248.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	120	2	3.09259	4.114805	5.13702	0.00202889	1.41518e-5	0.04086	0.00280557
chr5	146239729	146239828	2514483	0	+	0.464646	(0.44,0.476]	chr5	240194	19	INTRON	INTRON	ENSG00000275740:RBM27	ENSG00000275740.1:ENSG00000091009.8	ENST00000506502.2:ENST00000265271.7	protein_coding	protein_coding	protein_coding	protein_coding	2	64	2	2.73781	4.11439	5.49097	0.00276493	4.8612e-4	0.04867	0.0203841
chr1	50609843	50609943	448743	0	-	0.42	(0.408,0.44]	chr1	54223	30	INTRON	INTRON	FAF1	ENSG00000185104.21	ENST00000396153.7:ENST00000494400.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	23	2	4.00385	4.11416	4.22447	0.0454568	0.0161655	0.149888	0.109464
chr1	220137491	220137566	319230	0	+	0.426667	(0.408,0.44]	chr1	36563	2	SS3_PROX	SS3_PROX:INTRON	IARS2	ENSG00000067704.10	ENST00000366922.3	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	4.00385	4.11416	4.22447	0.0454568	0.0161655	0.149888	0.109464
chr1	231240523	231240623	655605	0	-	0.42	(0.408,0.44]	chr1	77771	1	SS5_PROX	SS5_PROX:INTRON	C1orf131	ENSG00000143633.13	ENST00000366651.7:ENST00000318906.6:ENST00000366649.7:ENST00000451322.1:ENST00000471936.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	23	2	4.00385	4.11416	4.22447	0.0454568	0.0161655	0.149888	0.109464
chr11	647539	647636	4888992	0	-	0.43299	(0.408,0.44]	chr11	457676	6	INTRON	INTRON	DEAF1	ENSG00000177030.19	ENST00000382409.4:ENST00000527170.5:ENST00000685854.1:ENST00000683307.1:ENST00000528864.6:ENST00000525626.6:ENST00000682936.1:ENST00000690068.1:ENST00000692634.1:ENST00000687329.1:ENST00000686001.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	23	2	4.00385	4.11416	4.22447	0.0454568	0.0161655	0.149888	0.109464
chr11	63869672	63869772	4801178	0	+	0.42	(0.408,0.44]	chr11	445044	3	SS5_PROX	SS5_PROX:INTRON	MARK2	ENSG00000072518.22	ENST00000377810.8:ENST00000361128.9:ENST00000508192.5:ENST00000350490.11:ENST00000402010.8:ENST00000502399.7:ENST00000425897.3:ENST00000679216.1:ENST00000513765.7:ENST00000543220.5:ENST00000543674.1:ENST00000540169.5	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	4.00385	4.11416	4.22447	0.0454568	0.0161655	0.149888	0.109464
chr11	69347569	69347669	4819964	0	+	0.41	(0.408,0.44]	chr11	449306	55	INTRON	INTRON	ENSG00000260877	ENSG00000260877.3	ENST00000544781.5:ENST00000541137.5:ENST00000561588.3:ENST00000540356.1	lncRNA	lncRNA	lncRNA	lncRNA	0	23	2	4.00385	4.11416	4.22447	0.0454568	0.0161655	0.149888	0.109464
chr11	78366401	78366500	4999873	0	-	0.424242	(0.408,0.44]	chr11	472472	19	INTRON	INTRON	GAB2	ENSG00000033327.13	ENST00000361507.5:ENST00000526030.1:ENST00000528886.5:ENST00000530915.1:ENST00000534823.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	23	2	4.00385	4.11416	4.22447	0.0454568	0.0161655	0.149888	0.109464
chr14	96557207	96557305	5810746	0	+	0.418367	(0.408,0.44]	chr14	550973	4	INTRON	INTRON	PAPOLA	ENSG00000090060.19	ENST00000216277.13:ENST00000553689.5:ENST00000392990.6:ENST00000555626.5:ENST00000556459.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	23	2	4.00385	4.11416	4.22447	0.0454568	0.0161655	0.149888	0.109464
chr15	67177267	67177366	6052977	0	+	0.414141	(0.408,0.44]	chr15	576318	23	INTRON	INTRON	SMAD3	ENSG00000166949.17	ENST00000327367.9:ENST00000679624.1:ENST00000540846.6:ENST00000558894.5:ENST00000439724.7:ENST00000681239.1:ENST00000537194.6:ENST00000558827.1:ENST00000558428.5:ENST00000560402.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	23	2	4.00385	4.11416	4.22447	0.0454568	0.0161655	0.149888	0.109464
chr16	4758858	4758952	6438383	0	-	0.43617	(0.408,0.44]	chr16	620051	4	INTRON	INTRON	ZNF500	ENSG00000103199.14	ENST00000219478.11:ENST00000545009.1:ENST00000589422.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	23	2	4.00385	4.11416	4.22447	0.0454568	0.0161655	0.149888	0.109464
chr16	18916179	18916279	6458008	0	-	0.43	(0.408,0.44]	chr16	622895	46	INTRON	INTRON	SMG1	ENSG00000157106.18	ENST00000446231.7:ENST00000532700.6:ENST00000569122.1	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	4.00385	4.11416	4.22447	0.0454568	0.0161655	0.149888	0.109464
chr16	58114309	58114382	6494615	0	-	0.424658	(0.408,0.44]	chr16	628285	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CFAP20	ENSG00000070761.8	ENST00000262498.8:ENST00000562622.5:ENST00000564150.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	23	2	4.00385	4.11416	4.22447	0.0454568	0.0161655	0.149888	0.109464
chr17	12135059	12135159	6557736	0	+	0.41	(0.408,0.44]	chr17	637496	54	INTRON	INTRON	MAP2K4	ENSG00000065559.15	ENST00000415385.7:ENST00000602305.5:ENST00000602375.5:ENST00000602811.5:ENST00000353533.10:ENST00000602537.5:ENST00000602686.5:ENST00000538465.7:ENST00000536413.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	23	2	4.00385	4.11416	4.22447	0.0454568	0.0161655	0.149888	0.109464
chr17	75662131	75662208	6838191	0	-	0.415584	(0.408,0.44]	chr17	675826	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RECQL5	ENSG00000108469.15	ENST00000317905.10:ENST00000423245.6:ENST00000578201.5:ENST00000420326.6:ENST00000340830.9:ENST00000584999.1:ENST00000580078.1	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	4.00385	4.11416	4.22447	0.0454568	0.0161655	0.149888	0.109464
chr18	3653504	3653599	6867470	0	+	0.421053	(0.408,0.44]	chr18	680399	2	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	ENSG00000266401	ENSG00000266401.3	ENST00000668204.1:ENST00000661913.1:ENST00000686910.1:ENST00000577848.1	lncRNA	lncRNA	lncRNA	lncRNA	0	23	2	4.00385	4.11416	4.22447	0.0454568	0.0161655	0.149888	0.109464
chr18	12983378	12983458	6876520	0	+	0.4375	(0.408,0.44]	chr18	681319	3	INTRON	INTRON	SEH1L	ENSG00000085415.16	ENST00000262124.15:ENST00000399892.7:ENST00000592582.5:ENST00000590843.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	23	2	4.00385	4.11416	4.22447	0.0454568	0.0161655	0.149888	0.109464
chr19	4794753	4794851	7002729	0	+	0.428571	(0.408,0.44]	chr19	694698	10	UTR3	UTR3:EXON_MRNA	FEM1A	ENSG00000141965.5	ENST00000269856.5	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	4.00385	4.11416	4.22447	0.0454568	0.0161655	0.149888	0.109464
chr20	35128363	35128462	7333044	0	-	0.434343	(0.408,0.44]	chr20	747004	16	INTRON	INTRON	EDEM2	ENSG00000088298.13	ENST00000374492.8:ENST00000374491.3	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	4.00385	4.11416	4.22447	0.0454568	0.0161655	0.149888	0.109464
chr20	57521570	57521670	7359246	0	-	0.41	(0.408,0.44]	chr20	750479	18	INTRON	INTRON	CTCFL	ENSG00000124092.13	ENST00000423479.7:ENST00000429804.7:ENST00000609232.5:ENST00000608263.5:ENST00000243914.8:ENST00000371196.6:ENST00000433949.7:ENST00000502686.6:ENST00000422109.6:ENST00000426658.6:ENST00000608440.5:ENST00000422869.6:ENST00000608425.5:ENST00000539382.5:ENST00000608903.5:ENST00000432255.6:ENST00000608108.1:ENST00000608858.5:ENST00000607923.5:ENST00000608720.5:ENST00000481655.2:ENST00000608158.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	23	2	4.00385	4.11416	4.22447	0.0454568	0.0161655	0.149888	0.109464
chr21	44956059	44956158	7417621	0	+	0.434343	(0.408,0.44]	chr21	756221	119	INTRON	INTRON	SLX9	ENSG00000160256.13	ENST00000397826.7:ENST00000458015.1:ENST00000291634.11	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	4.00385	4.11416	4.22447	0.0454568	0.0161655	0.149888	0.109464
chr3	48162028	48162127	1687559	0	-	0.414141	(0.408,0.44]	chr3	172294	22	INTRON	INTRON	CDC25A	ENSG00000164045.12	ENST00000302506.8:ENST00000351231.7	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	4.00385	4.11416	4.22447	0.0454568	0.0161655	0.149888	0.109464
chr3	197812909	197813009	1597934	0	+	0.41	(0.408,0.44]	chr3	165560	210	INTRON	INTRON	LRCH3	ENSG00000186001.14	ENST00000443727.1:ENST00000438796.6:ENST00000428136.2:ENST00000425562.7:ENST00000441090.6:ENST00000414675.6:ENST00000334859.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	23	2	4.00385	4.11416	4.22447	0.0454568	0.0161655	0.149888	0.109464
chr5	55626493	55626593	2621479	0	-	0.42	(0.408,0.44]	chr5	249028	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	SLC38A9	ENSG00000177058.12	ENST00000505708.5:ENST00000515159.5:ENST00000416547.6:ENST00000318672.7:ENST00000396865.7:ENST00000508124.5:ENST00000515629.5:ENST00000512595.5:ENST00000511233.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	23	2	4.00385	4.11416	4.22447	0.0454568	0.0161655	0.149888	0.109464
chr6	119243861	119243961	3204754	0	-	0.41	(0.408,0.44]	chr6	298302	386	INTRON	INTRON	MAN1A1	ENSG00000111885.7	ENST00000368468.4	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	4.00385	4.11416	4.22447	0.0454568	0.0161655	0.149888	0.109464
chr7	11086220	11086320	3283735	0	+	0.44	(0.408,0.44]	chr7	304989	233	INTRON	INTRON	PHF14	ENSG00000106443.17	ENST00000642461.1:ENST00000634607.2:ENST00000403050.7:ENST00000521747.5:ENST00000423760.6:ENST00000481418.5:ENST00000470665.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	23	2	4.00385	4.11416	4.22447	0.0454568	0.0161655	0.149888	0.109464
chr8	22249891	22249974	3712576	0	+	0.421687	(0.408,0.44]	chr8	344780	2	SS3_PROX	SS3_PROX:INTRON	POLR3D	ENSG00000168495.13	ENST00000306433.9:ENST00000397802.8:ENST00000518039.1:ENST00000517789.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	23	2	4.00385	4.11416	4.22447	0.0454568	0.0161655	0.149888	0.109464
chr8	53994654	53994753	3953023	0	-	0.434343	(0.408,0.44]	chr8	362546	5	INTRON	INTRON	TCEA1	ENSG00000187735.15	ENST00000396401.7:ENST00000521604.7:ENST00000521086.6:ENST00000522635.5:ENST00000522397.5:ENST00000640382.1:ENST00000640041.1:ENST00000520534.5:ENST00000518310.5:ENST00000517351.5:ENST00000521836.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	23	2	4.00385	4.11416	4.22447	0.0454568	0.0161655	0.149888	0.109464
chr9	131648347	131648446	4362989	0	-	0.424242	(0.408,0.44]	chr9	401266	46	INTRON	INTRON	RAPGEF1	ENSG00000107263.19	ENST00000372195.5:ENST00000372189.7:ENST00000683357.1:ENST00000372190.7:ENST00000438647.3	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	4.00385	4.11416	4.22447	0.0454568	0.0161655	0.149888	0.109464
chr1	227068309	227068387	649195	0	-	0.153846	[0,0.28]	chr1	76985	3	SS5_PROX	SS5_PROX:INTRON	CDC42BPA	ENSG00000143776.20	ENST00000366766.8:ENST00000366769.7:ENST00000334218.9:ENST00000366767.7:ENST00000448940.5:ENST00000442054.5:ENST00000366764.8:ENST00000441725.1:ENST00000684580.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	89	2	2.33825	4.114135	5.89002	0.0195228	1.86278e-4	0.109483	0.0119078
chr2	152689568	152689667	1246238	0	-	0.50505	(0.476,0.515]	chr2	132338	79	INTRON	INTRON	PRPF40A	ENSG00000196504.20	ENST00000410080.8:ENST00000545856.8:ENST00000696382.1:ENST00000696381.1:ENST00000354363.11:ENST00000493468.7:ENST00000448428.2:ENST00000467114.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	88	2	2.31113	4.11394	5.91675	0.00258657	6.46096e-5	0.0469354	0.00711194
chr3	155891723	155891823	1537340	0	+	0.5	(0.476,0.515]	chr3	160090	11	INTRON	INTRON	GMPS	ENSG00000163655.16	ENST00000496455.7:ENST00000295920.7	protein_coding	protein_coding	protein_coding	protein_coding	4	88	2	2.31113	4.11394	5.91675	0.00258657	6.46096e-5	0.0469354	0.00711194
chr1	23111146	23111245	398439	0	-	0.424242	(0.408,0.44]	chr1	47808	11	INTRON	INTRON	LUZP1	ENSG00000169641.14	ENST00000302291.8:ENST00000314174.5:ENST00000471849.5:ENST00000475164.2	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	4.10594	4.113905000000001	4.12187	0.0354689	0.0219367	0.137535	0.123836
chr1	26923389	26923488	52772	0	+	0.434343	(0.408,0.44]	chr1	6755	5	INTRON	INTRON	NUDC	ENSG00000090273.14	ENST00000435827.6:ENST00000321265.10:ENST00000452707.1	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	4.10594	4.113905000000001	4.12187	0.0354689	0.0219367	0.137535	0.123836
chr1	65368879	65368978	136690	0	+	0.434343	(0.408,0.44]	chr1	15376	23	INTRON	INTRON	DNAJC6	ENSG00000116675.16	ENST00000494710.6:ENST00000263441.11:ENST00000395325.7:ENST00000371069.5:ENST00000472787.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	23	2	4.10594	4.113905000000001	4.12187	0.0354689	0.0219367	0.137535	0.123836
chr1	176166376	176166476	591304	0	-	0.43	(0.408,0.44]	chr1	70964	21	INTRON	INTRON	COP1	ENSG00000143207.21	ENST00000367669.8:ENST00000367667.5:ENST00000367666.5:ENST00000649803.1:ENST00000308769.12:ENST00000498306.5:ENST00000491600.5:ENST00000474194.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	23	2	4.10594	4.113905000000001	4.12187	0.0354689	0.0219367	0.137535	0.123836
chr10	122878484	122878584	4710348	0	-	0.42	(0.408,0.44]	chr10	434632	223	INTRON	INTRON	FAM24B	ENSG00000213185.7	ENST00000368898.8:ENST00000462859.5:ENST00000368896.1:ENST00000489000.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	23	2	4.10594	4.113905000000001	4.12187	0.0354689	0.0219367	0.137535	0.123836
chr11	43435963	43436063	4777336	0	+	0.43	(0.408,0.44]	chr11	441770	4	SS3_PROX	SS3_PROX:INTRON	TTC17	ENSG00000052841.15	ENST00000039989.9:ENST00000299240.10:ENST00000526774.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	23	2	4.10594	4.113905000000001	4.12187	0.0354689	0.0219367	0.137535	0.123836
chr12	49749696	49749776	5135011	0	+	0.4125	(0.408,0.44]	chr12	484126	2	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	TMBIM6	ENSG00000139644.13	ENST00000548809.5:ENST00000551154.5:ENST00000546796.5:ENST00000549966.5:ENST00000547832.5:ENST00000547187.5:ENST00000267115.10:ENST00000552699.5:ENST00000552635.5:ENST00000546914.5:ENST00000548894.5:ENST00000549445.5:ENST00000550951.5:ENST00000549385.5:ENST00000548201.5:ENST00000548713.5:ENST00000423828.5:ENST00000550445.5:ENST00000549130.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	23	2	4.10594	4.113905000000001	4.12187	0.0354689	0.0219367	0.137535	0.123836
chr12	64672496	64672596	5155618	0	+	0.44	(0.408,0.44]	chr12	488093	610	INTRON	INTRON	RASSF3	ENSG00000153179.13	ENST00000637125.1:ENST00000542104.6:ENST00000283172.8:ENST00000336061.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	23	2	4.10594	4.113905000000001	4.12187	0.0354689	0.0219367	0.137535	0.123836
chr14	73081109	73081208	5784310	0	+	0.424242	(0.408,0.44]	chr14	547839	32	INTRON	INTRON	RBM25	ENSG00000119707.14	ENST00000527432.5:ENST00000531500.5:ENST00000261973.12:ENST00000532683.5:ENST00000525321.5:ENST00000526754.5:ENST00000525161.5:ENST00000528081.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	23	2	4.10594	4.113905000000001	4.12187	0.0354689	0.0219367	0.137535	0.123836
chr15	83588065	83588161	6083399	0	+	0.427083	(0.408,0.44]	chr15	579087	6	INTRON	INTRON	SH3GL3	ENSG00000140600.17	ENST00000427482.7:ENST00000563901.5:ENST00000324537.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	23	2	4.10594	4.113905000000001	4.12187	0.0354689	0.0219367	0.137535	0.123836
chr16	18886455	18886552	6457702	0	-	0.412371	(0.408,0.44]	chr16	622855	4	INTRON	INTRON	SMG1	ENSG00000157106.18	ENST00000446231.7:ENST00000565324.5:ENST00000561947.5:ENST00000565224.5:ENST00000532700.6	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	4.10594	4.113905000000001	4.12187	0.0354689	0.0219367	0.137535	0.123836
chr17	12128045	12128143	6557665	0	+	0.418367	(0.408,0.44]	chr17	637490	23	INTRON	INTRON	MAP2K4	ENSG00000065559.15	ENST00000415385.7:ENST00000602305.5:ENST00000602375.5:ENST00000602811.5:ENST00000353533.10:ENST00000602537.5:ENST00000602686.5:ENST00000538465.7:ENST00000585076.1:ENST00000536413.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	23	2	4.10594	4.113905000000001	4.12187	0.0354689	0.0219367	0.137535	0.123836
chr19	8318605	8318702	7130998	0	-	0.42268	(0.408,0.44]	chr19	718449	16	INTRON	INTRON	ENSG00000167774:NDUFA7	ENSG00000167774.2:ENSG00000267855.6	ENST00000598884.1:ENST00000593729.5:ENST00000601101.5:ENST00000595856.5:ENST00000602059.1:ENST00000301457.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	23	2	4.10594	4.113905000000001	4.12187	0.0354689	0.0219367	0.137535	0.123836
chr19	11147912	11147994	7136895	0	-	0.439024	(0.408,0.44]	chr19	719795	1	SSB_ADJ	SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SPC24	ENSG00000161888.12	ENST00000585567.5:ENST00000592540.6:ENST00000591396.5:ENST00000592967.5:ENST00000423327.2:ENST00000586708.1:ENST00000585486.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	23	2	4.10594	4.113905000000001	4.12187	0.0354689	0.0219367	0.137535	0.123836
chr19	19434163	19434263	7035632	0	+	0.43	(0.408,0.44]	chr19	701439	58	INTRON	INTRON	GATAD2A	ENSG00000167491.18	ENST00000494516.6:ENST00000360315.7:ENST00000609040.5:ENST00000417582.6:ENST00000683918.1:ENST00000448576.6:ENST00000432704.5:ENST00000404158.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	23	2	4.10594	4.113905000000001	4.12187	0.0354689	0.0219367	0.137535	0.123836
chr19	40701329	40701427	7184690	0	-	0.438776	(0.408,0.44]	chr19	726786	10	EXON_MRNA	EXON_MRNA:INTRON	COQ8B	ENSG00000123815.13	ENST00000677496.1:ENST00000594720.6:ENST00000679002.1:ENST00000677018.1:ENST00000678166.1:ENST00000678312.1:ENST00000677399.1:ENST00000678433.1:ENST00000678371.1:ENST00000678057.1:ENST00000678316.1:ENST00000677633.1:ENST00000596455.6:ENST00000679130.1:ENST00000679012.1:ENST00000679315.1:ENST00000593724.2:ENST00000676578.1:ENST00000678404.1:ENST00000677517.1:ENST00000601967.6:ENST00000678961.1:ENST00000677800.1:ENST00000676960.1:ENST00000678419.1:ENST00000679070.1:ENST00000678119.1:ENST00000594490.6:ENST00000676962.1:ENST00000678467.1:ENST00000678569.1:ENST00000677039.1:ENST00000324464.8:ENST00000243583.10:ENST00000676555.1:ENST00000595254.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	23	2	4.10594	4.113905000000001	4.12187	0.0354689	0.0219367	0.137535	0.123836
chr2	39059997	39060096	1101725	0	-	0.434343	(0.408,0.44]	chr2	118296	8	INTRON	INTRON	SOS1	ENSG00000115904.15	ENST00000692089.1:ENST00000402219.8:ENST00000690876.1:ENST00000395038.6:ENST00000691229.1:ENST00000689668.1:ENST00000690679.1:ENST00000461545.2:ENST00000685782.1:ENST00000451331.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	23	2	4.10594	4.113905000000001	4.12187	0.0354689	0.0219367	0.137535	0.123836
chr2	74050706	74050806	812447	0	+	0.44	(0.408,0.44]	chr2	90858	19	INTRON	INTRON	TET3	ENSG00000187605.16	ENST00000409262.8:ENST00000305799.8:ENST00000475405.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	23	2	4.10594	4.113905000000001	4.12187	0.0354689	0.0219367	0.137535	0.123836
chr3	46965184	46965283	1679915	0	-	0.424242	(0.408,0.44]	chr3	171431	238	INTRON	INTRON	CCDC12	ENSG00000160799.12	ENST00000425441.5:ENST00000683445.1:ENST00000292314.6:ENST00000605358.5:ENST00000488069.5:ENST00000603885.5:ENST00000446836.5:ENST00000494655.5:ENST00000604164.5:ENST00000604181.1:ENST00000605875.1:ENST00000460035.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	23	2	4.10594	4.113905000000001	4.12187	0.0354689	0.0219367	0.137535	0.123836
chr3	107687603	107687703	1471404	0	+	0.41	(0.408,0.44]	chr3	154195	25	INTRON	INTRON	BBX	ENSG00000114439.19	ENST00000415149.6:ENST00000402543.5:ENST00000325805.13:ENST00000485939.5:ENST00000427402.5:ENST00000416476.6:ENST00000454540.5:ENST00000449335.5:ENST00000431630.5:ENST00000458458.5:ENST00000456817.5:ENST00000456419.5:ENST00000402163.6:ENST00000406780.5:ENST00000413213.5:ENST00000449271.5:ENST00000425868.5:ENST00000449213.5:ENST00000457496.5:ENST00000429270.1:ENST00000472032.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	23	2	4.10594	4.113905000000001	4.12187	0.0354689	0.0219367	0.137535	0.123836
chr3	150626139	150626231	1534681	0	+	0.423913	(0.408,0.44]	chr3	159955	9	INTRON	INTRON	SELENOT	ENSG00000198843.14	ENST00000480740.5:ENST00000477889.5:ENST00000471696.6:ENST00000492132.1:ENST00000485923.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	23	2	4.10594	4.113905000000001	4.12187	0.0354689	0.0219367	0.137535	0.123836
chr3	183862901	183863001	1881384	0	-	0.43	(0.408,0.44]	chr3	188025	1	SS3_PROX	SS3_PROX:INTRON	PARL	ENSG00000175193.14	ENST00000639100.1:ENST00000317096.9:ENST00000638817.1:ENST00000311101.9:ENST00000435888.5:ENST00000639900.1:ENST00000421484.5:ENST00000449306.1:ENST00000469056.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	23	2	4.10594	4.113905000000001	4.12187	0.0354689	0.0219367	0.137535	0.123836
chr4	128860907	128861006	2044788	0	+	0.434343	(0.408,0.44]	chr4	203041	31	INTRON	INTRON	JADE1	ENSG00000077684.16	ENST00000226319.11:ENST00000511647.5:ENST00000452328.6:ENST00000512960.5:ENST00000610919.4:ENST00000413543.6:ENST00000611140.4	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	4.10594	4.113905000000001	4.12187	0.0354689	0.0219367	0.137535	0.123836
chr4	150736065	150736165	2268937	0	-	0.43	(0.408,0.44]	chr4	220732	3	INTRON	INTRON	LRBA	ENSG00000198589.14	ENST00000357115.9:ENST00000651943.2:ENST00000510413.5:ENST00000509835.5:ENST00000651695.1:ENST00000651035.1:ENST00000507224.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	23	2	4.10594	4.113905000000001	4.12187	0.0354689	0.0219367	0.137535	0.123836
chr5	27472519	27472619	2329589	0	+	0.44	(0.408,0.44]	chr5	225099	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	PURPL	ENSG00000250337.8	ENST00000651409.1:ENST00000650981.1:ENST00000655107.1:ENST00000657375.2:ENST00000659077.1:ENST00000653835.1:ENST00000657173.1:ENST00000514844.6:ENST00000657424.1:ENST00000660307.1:ENST00000669423.1:ENST00000659860.1:ENST00000652841.1:ENST00000686605.1:ENST00000690628.1:ENST00000510165.6:ENST00000670554.1:ENST00000665451.1:ENST00000667624.1:ENST00000667420.1:ENST00000660639.1:ENST00000668406.1:ENST00000656783.1:ENST00000512067.5:ENST00000664566.1:ENST00000659489.1:ENST00000667264.1:ENST00000670840.1:ENST00000503107.2:ENST00000688783.1:ENST00000654039.1:ENST00000687778.1:ENST00000505775.5:ENST00000668103.1:ENST00000664501.1:ENST00000661698.1	lncRNA	lncRNA	lncRNA	lncRNA	0	23	2	4.10594	4.113905000000001	4.12187	0.0354689	0.0219367	0.137535	0.123836
chr5	55693842	55693929	2622179	0	-	0.413793	(0.408,0.44]	chr5	249131	4	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SLC38A9	ENSG00000177058.12	ENST00000416547.6:ENST00000318672.7:ENST00000396865.7:ENST00000508124.5:ENST00000511233.5:ENST00000512208.5:ENST00000514806.5:ENST00000503891.5:ENST00000513993.5:ENST00000505563.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	23	2	4.10594	4.113905000000001	4.12187	0.0354689	0.0219367	0.137535	0.123836
chr5	79263734	79263834	2398073	0	+	0.44	(0.408,0.44]	chr5	231607	257	INTRON	INTRON	JMY	ENSG00000152409.9	ENST00000396137.5	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	4.10594	4.113905000000001	4.12187	0.0354689	0.0219367	0.137535	0.123836
chr5	177221778	177221877	2554585	0	+	0.414141	(0.408,0.44]	chr5	243958	92	INTRON	INTRON	NSD1	ENSG00000165671.22	ENST00000689549.1:ENST00000354179.9:ENST00000686993.1:ENST00000689326.1:ENST00000439151.7:ENST00000510954.6:ENST00000689345.1:ENST00000347982.9:ENST00000687453.1:ENST00000685206.1:ENST00000688613.1:ENST00000375350.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	23	2	4.10594	4.113905000000001	4.12187	0.0354689	0.0219367	0.137535	0.123836
chr7	11070355	11070455	3283576	0	+	0.42	(0.408,0.44]	chr7	304989	74	INTRON	INTRON	PHF14	ENSG00000106443.17	ENST00000642461.1:ENST00000634607.2:ENST00000403050.7:ENST00000521747.5:ENST00000423760.6:ENST00000481418.5:ENST00000470665.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	23	2	4.10594	4.113905000000001	4.12187	0.0354689	0.0219367	0.137535	0.123836
chr7	27754848	27754947	3293495	0	+	0.414141	(0.408,0.44]	chr7	305953	58	INTRON	INTRON	TAX1BP1	ENSG00000106052.14	ENST00000418691.5:ENST00000543117.5:ENST00000422800.5:ENST00000433216.6:ENST00000265393.10:ENST00000409980.5:ENST00000416801.6:ENST00000396319.7:ENST00000490455.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	23	2	4.10594	4.113905000000001	4.12187	0.0354689	0.0219367	0.137535	0.123836
chr7	40019492	40019592	3311322	0	+	0.43	(0.408,0.44]	chr7	307507	171	INTRON	INTRON	CDK13	ENSG00000065883.17	ENST00000340829.10:ENST00000181839.10:ENST00000613626.4:ENST00000646039.1:ENST00000643859.1:ENST00000484589.2:ENST00000643915.1:ENST00000647453.1:ENST00000645470.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	23	2	4.10594	4.113905000000001	4.12187	0.0354689	0.0219367	0.137535	0.123836
chr7	43882556	43882655	3526499	0	-	0.414141	(0.408,0.44]	chr7	328834	2	INTRON	INTRON	URGCP	ENSG00000106608.17	ENST00000497914.5:ENST00000443736.5:ENST00000402306.7:ENST00000453200.6:ENST00000336086.10:ENST00000439702.5:ENST00000426198.5:ENST00000455877.5:ENST00000446958.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	23	2	4.10594	4.113905000000001	4.12187	0.0354689	0.0219367	0.137535	0.123836
chr7	100820482	100820560	3587751	0	-	0.410256	(0.408,0.44]	chr7	334716	1	SS3_PROX	SS3_PROX:INTRON	EPHB4	ENSG00000196411.10	ENST00000358173.8:ENST00000616502.4:ENST00000360620.7:ENST00000487222.5:ENST00000477446.5:ENST00000489808.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	23	2	4.10594	4.113905000000001	4.12187	0.0354689	0.0219367	0.137535	0.123836
chr7	107562005	107562105	3613013	0	-	0.43	(0.408,0.44]	chr7	336728	35	INTRON	INTRON	COG5	ENSG00000164597.15	ENST00000297135.9:ENST00000347053.8:ENST00000393603.7:ENST00000605888.1	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	4.10594	4.113905000000001	4.12187	0.0354689	0.0219367	0.137535	0.123836
chr8	60280547	60280647	3956895	0	-	0.42	(0.408,0.44]	chr8	362992	1	SS5_PROX	SS5_PROX:INTRON	CA8	ENSG00000178538.10	ENST00000317995.5:ENST00000524872.5:ENST00000529918.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	23	2	4.10594	4.113905000000001	4.12187	0.0354689	0.0219367	0.137535	0.123836
chr8	140674704	140674804	4076749	0	-	0.43	(0.408,0.44]	chr8	370331	3	SS3_PROX	SS3_PROX:INTRON	PTK2	ENSG00000169398.20	ENST00000696786.1:ENST00000522684.5:ENST00000395218.3:ENST00000519654.5:ENST00000521059.5:ENST00000517887.5:ENST00000519465.5:ENST00000519993.5:ENST00000340930.7:ENST00000523539.5:ENST00000519419.5:ENST00000524202.5:ENST00000430260.6:ENST00000521986.5:ENST00000523805.5:ENST00000520460.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	23	2	4.10594	4.113905000000001	4.12187	0.0354689	0.0219367	0.137535	0.123836
chrX	138970420	138970520	7901267	0	-	0.42	(0.408,0.44]	chrX	804239	1054	INTRON	INTRON	FGF13	ENSG00000129682.16	ENST00000441825.8:ENST00000626909.2:ENST00000436198.5:ENST00000455663.5:ENST00000448673.1:ENST00000421460.1	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	4.10594	4.113905000000001	4.12187	0.0354689	0.0219367	0.137535	0.123836
chr3	49381376	49381476	1693756	0	-	0.47	(0.44,0.476]	chr3	173707	54	INTRON	INTRON	RHOA	ENSG00000067560.14	ENST00000678200.1:ENST00000422781.6:ENST00000676712.2:ENST00000678921.2:ENST00000445425.6:ENST00000454011.7:ENST00000418115.6:ENST00000679208.1:ENST00000677684.1:ENST00000431929.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	64	2	2.78129	4.113745	5.4462	0.00229634	5.83686e-4	0.0439319	0.0223753
chr6	111281404	111281504	2940000	0	+	0.3	(0.28,0.32]	chr6	276924	15	INTRON	INTRON	MFSD4B	ENSG00000173214.7	ENST00000673446.1:ENST00000673245.1:ENST00000666581.2	protein_coding	processed_transcript	protein_coding	processed_transcript	1	55	2	3.1268	4.113745	5.10069	0.00610574	0.00508956	0.0676501	0.0646039
chr12	50408107	50408207	5136405	0	+	0.31	(0.28,0.32]	chr12	484352	49	INTRON	INTRON	LARP4	ENSG00000161813.23	ENST00000550522.5:ENST00000293618.12:ENST00000429001.7:ENST00000398473.7:ENST00000548174.5:ENST00000548697.5:ENST00000548993.5:ENST00000522085.5:ENST00000518444.5:ENST00000551886.5:ENST00000523389.5:ENST00000518561.5:ENST00000347328.9:ENST00000550260.1:ENST00000517559.5:ENST00000552445.1	protein_coding	protein_coding	protein_coding	protein_coding	1	60	2	2.82769	4.113655	5.39962	0.0169391	7.06751e-4	0.103888	0.0241881
chr2	151414622	151414722	893252	0	+	0.32	(0.28,0.32]	chr2	98879	4	SS3_PROX	SS3_PROX:INTRON	RIF1	ENSG00000080345.18	ENST00000453091.6:ENST00000428287.6:ENST00000494333.1:ENST00000444746.7:ENST00000243326.9:ENST00000414861.6:ENST00000430328.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	60	2	2.82769	4.113655	5.39962	0.0169391	7.06751e-4	0.103888	0.0241881
chr7	72706420	72706520	3552492	0	-	0.31	(0.28,0.32]	chr7	330536	112	INTRON	INTRON	TYW1B	ENSG00000277149.5	ENST00000612372.4:ENST00000620995.5	protein_coding	protein_coding	protein_coding	protein_coding	1	55	2	2.97333	4.113605	5.25388	0.00857834	0.00385849	0.083729	0.0542786
chr10	73125609	73125709	4452227	0	+	0.23	[0,0.28]	chr10	410862	1	SS5_PROX	SS5_PROX:INTRON	NUDT13	ENSG00000166321.14	ENST00000537969.5:ENST00000544879.5:ENST00000617744.4:ENST00000357321.9:ENST00000349051.9:ENST00000488223.5:ENST00000372997.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	97	2	2.16436	4.1135399999999995	6.06272	0.0120935	4.91495e-4	0.0962599	0.0205704
chr10	73046624	73046724	4647336	0	-	0.29	(0.28,0.32]	chr10	427513	3	SS5_PROX	SS5_PROX:INTRON	P4HA1	ENSG00000122884.13	ENST00000394890.7:ENST00000307116.6:ENST00000373008.6:ENST00000440381.5:ENST00000263556.3	protein_coding	protein_coding	protein_coding	protein_coding	2	75	2	2.87934	4.113495	5.34765	0.00287138	0.00189034	0.0474836	0.0402736
chr16	81006133	81006233	6530690	0	-	0.32	(0.28,0.32]	chr16	632677	44	INTRON	INTRON	CMC2	ENSG00000103121.9	ENST00000219400.8:ENST00000486645.5:ENST00000570195.5:ENST00000569187.5:ENST00000570086.5:ENST00000565650.5:ENST00000567593.5:ENST00000568228.5:ENST00000565914.5:ENST00000565108.5:ENST00000565925.5:ENST00000564174.5:ENST00000565613.5:ENST00000562713.3:ENST00000562828.5:ENST00000630396.1:ENST00000565514.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	89	2	2.32052	4.112970000000001	5.90542	0.00612675	3.92169e-4	0.0708525	0.0184748
chr4	57006219	57006315	1964215	0	+	0.3125	(0.28,0.32]	chr4	197146	1	INTRON	INTRON	POLR2B	ENSG00000047315.17	ENST00000381227.5:ENST00000431623.6:ENST00000441246.6:ENST00000314595.6	protein_coding	protein_coding	protein_coding	protein_coding	3	89	2	2.32052	4.112970000000001	5.90542	0.00612675	3.92169e-4	0.0708525	0.0184748
chr7	121174234	121174334	3395511	0	+	0.32	(0.28,0.32]	chr7	317781	242	INTRON	INTRON	CPED1	ENSG00000106034.18	ENST00000310396.10:ENST00000450913.6:ENST00000423795.5:ENST00000466055.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	76	2	2.28998	4.1129549999999995	5.93593	0.0166401	3.47635e-4	0.110511	0.017378
chr1	50552204	50552304	448160	0	-	0.51	(0.476,0.515]	chr1	54189	121	INTRON	INTRON	FAF1	ENSG00000185104.21	ENST00000396153.7:ENST00000494400.5:ENST00000472808.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	48	2	3.07422	4.112825	5.15143	0.00506023	0.00166579	0.0646039	0.0369207
chr19	19483609	19483709	7036132	0	+	0.51	(0.476,0.515]	chr19	701470	105	INTRON	INTRON	GATAD2A	ENSG00000167491.18	ENST00000360315.7:ENST00000609040.5:ENST00000417582.6:ENST00000683918.1:ENST00000432704.5:ENST00000404158.5:ENST00000429242.7:ENST00000358713.7:ENST00000444839.1:ENST00000418032.3:ENST00000473184.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	48	2	3.07422	4.112825	5.15143	0.00506023	0.00166579	0.0646039	0.0369207
chr20	56365500	56365570	7287263	0	+	0.514286	(0.476,0.515]	chr20	741372	3	SS5_PROX	SS5_PROX:INTRON	FAM210B	ENSG00000124098.10	ENST00000371384.4	protein_coding	protein_coding	protein_coding	protein_coding	1	48	2	3.07422	4.112825	5.15143	0.00506023	0.00166579	0.0646039	0.0369207
chr5	79618467	79618559	2398786	0	+	0.51087	(0.476,0.515]	chr5	231687	5	INTRON	INTRON	TENT2	ENSG00000164329.14	ENST00000505571.5:ENST00000423041.6:ENST00000504233.5:ENST00000453514.6:ENST00000428308.6:ENST00000515807.5:ENST00000296783.7:ENST00000514095.5:ENST00000508620.5:ENST00000503620.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	48	2	3.07422	4.112825	5.15143	0.00506023	0.00166579	0.0646039	0.0369207
chr7	156824818	156824917	3687327	0	-	0.353535	(0.35,0.378]	chr7	342068	5	INTRON	INTRON	LMBR1	ENSG00000105983.23	ENST00000353442.10:ENST00000415428.5:ENST00000454132.5:ENST00000434503.5:ENST00000430278.5:ENST00000434278.5:ENST00000444719.5:ENST00000461469.5:ENST00000414218.1:ENST00000434453.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	91	2	2.54394	4.112795	5.68165	0.0028214	9.36553e-5	0.0472361	0.00811835
chr20	41583534	41583634	7344196	0	-	0.37	(0.35,0.378]	chr20	748566	190	INTRON	INTRON	CHD6	ENSG00000124177.16	ENST00000373233.8:ENST00000373222.3:ENST00000482596.1:ENST00000440647.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	53	2	2.6498	4.1127199999999995	5.57564	0.0210137	5.93654e-4	0.122348	0.0225024
chr5	149763700	149763799	2517387	0	+	0.353535	(0.35,0.378]	chr5	240653	17	INTRON	INTRON	PPARGC1B	ENSG00000155846.17	ENST00000360453.8:ENST00000394320.7:ENST00000461780.1:ENST00000309241.10	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	53	2	2.6498	4.1127199999999995	5.57564	0.0210137	5.93654e-4	0.122348	0.0225024
chr10	18662579	18662679	4404108	0	+	0.33	(0.32,0.35]	chr10	406367	25	INTRON	INTRON	ARL5B	ENSG00000165997.5	ENST00000377275.4	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	4.06299	4.112425	4.16186	0.0559439	0.026079	0.165463	0.133676
chr14	19333018	19333109	5832354	0	-	0.32967	(0.32,0.35]	chr14	553807	7	INTRON	INTRON	DUXAP10	ENSG00000244306.11	ENST00000648085.1:ENST00000614614.4:ENST00000612696.4:ENST00000619784.4:ENST00000616922.4:ENST00000624585.3:ENST00000549065.5:ENST00000610531.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	0	24	2	4.06299	4.112425	4.16186	0.0559439	0.026079	0.165463	0.133676
chr15	60379356	60379455	6195141	0	-	0.323232	(0.32,0.35]	chr15	590323	43	INTRON	INTRON	ANXA2	ENSG00000182718.18	ENST00000396024.7:ENST00000559818.6:ENST00000679109.1:ENST00000676687.1:ENST00000558169.6:ENST00000557906.6:ENST00000558558.6:ENST00000559113.6:ENST00000559780.6:ENST00000559956.6:ENST00000560468.6:ENST00000678870.1:ENST00000678061.1:ENST00000678450.1:ENST00000677968.1:ENST00000451270.7:ENST00000558985.6:ENST00000678796.1:ENST00000559647.2:ENST00000332680.8:ENST00000560014.5:ENST00000504475.6:ENST00000421017.6:ENST00000560466.5:ENST00000558132.5:ENST00000561022.5:ENST00000560367.6:ENST00000558503.6:ENST00000558998.5:ENST00000559559.5:ENST00000560165.5:ENST00000560389.5:ENST00000559725.5:ENST00000559350.5:ENST00000558986.5:ENST00000677258.1:ENST00000559467.5:ENST00000561445.5:ENST00000557937.5:ENST00000557904.5:ENST00000559370.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	24	2	4.06299	4.112425	4.16186	0.0559439	0.026079	0.165463	0.133676
chr15	83055593	83055691	6249324	0	-	0.336735	(0.32,0.35]	chr15	596411	51	INTRON	INTRON	BTBD1	ENSG00000064726.10	ENST00000261721.9:ENST00000379403.2:ENST00000559652.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	24	2	4.06299	4.112425	4.16186	0.0559439	0.026079	0.165463	0.133676
chr16	24797570	24797670	6329906	0	+	0.33	(0.32,0.35]	chr16	605987	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TNRC6A	ENSG00000090905.19	ENST00000395799.8:ENST00000315183.11:ENST00000491718.5:ENST00000450465.6:ENST00000561726.1:ENST00000568806.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	24	2	4.06299	4.112425	4.16186	0.0559439	0.026079	0.165463	0.133676
chr16	46593357	46593456	6477831	0	-	0.323232	(0.32,0.35]	chr16	626567	89	INTRON	INTRON	SHCBP1	ENSG00000171241.9	ENST00000303383.8	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	4.06299	4.112425	4.16186	0.0559439	0.026079	0.165463	0.133676
chr17	35630104	35630203	6599975	0	+	0.343434	(0.32,0.35]	chr17	642282	20	INTRON	INTRON	AP2B1	ENSG00000006125.18	ENST00000616784.4:ENST00000621914.4:ENST00000620039.4:ENST00000616681.4:ENST00000621668.4:ENST00000610402.5:ENST00000612035.4:ENST00000614600.4:ENST00000612116.5:ENST00000618940.4:ENST00000619183.1:ENST00000588116.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	24	2	4.06299	4.112425	4.16186	0.0559439	0.026079	0.165463	0.133676
chr18	12473224	12473323	6947431	0	-	0.323232	(0.32,0.35]	chr18	687325	79	INTRON	INTRON	SPIRE1	ENSG00000134278.16	ENST00000409402.9:ENST00000410092.7:ENST00000309836.9:ENST00000440472.6:ENST00000453447.6:ENST00000464481.5:ENST00000592156.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	24	2	4.06299	4.112425	4.16186	0.0559439	0.026079	0.165463	0.133676
chr18	13061592	13061691	6877297	0	+	0.323232	(0.32,0.35]	chr18	681458	19	INTRON	INTRON	CEP192	ENSG00000101639.19	ENST00000325971.12:ENST00000506447.5:ENST00000513432.5:ENST00000511820.6:ENST00000510237.5:ENST00000589993.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	24	2	4.06299	4.112425	4.16186	0.0559439	0.026079	0.165463	0.133676
chr2	75661217	75661316	815846	0	+	0.343434	(0.32,0.35]	chr2	91359	61	UTR3	UTR3:EXON_MRNA:INTRON	MRPL19	ENSG00000115364.14	ENST00000393909.7:ENST00000358788.10:ENST00000409374.5:ENST00000492255.1:ENST00000453233.1	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	4.06299	4.112425	4.16186	0.0559439	0.026079	0.165463	0.133676
chr2	190653331	190653429	959076	0	+	0.336735	(0.32,0.35]	chr2	104100	30	INTRON	INTRON	NAB1	ENSG00000138386.17	ENST00000448811.1:ENST00000416973.1:ENST00000426601.1:ENST00000409581.5:ENST00000337386.10	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	4.06299	4.112425	4.16186	0.0559439	0.026079	0.165463	0.133676
chr2	210012409	210012508	1000422	0	+	0.323232	(0.32,0.35]	chr2	107384	23	INTRON	INTRON	RPE	ENSG00000197713.15	ENST00000354506.10:ENST00000436630.6:ENST00000408981.6:ENST00000429921.5:ENST00000454822.5:ENST00000453724.5:ENST00000359429.11:ENST00000438265.5:ENST00000429907.5:ENST00000438204.6:ENST00000452025.5:ENST00000445268.5:ENST00000441588.5:ENST00000438191.1:ENST00000411934.6:ENST00000435437.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	24	2	4.06299	4.112425	4.16186	0.0559439	0.026079	0.165463	0.133676
chr22	19925264	19925363	7556159	0	-	0.333333	(0.32,0.35]	chr22	772554	53	INTRON	INTRON	TXNRD2	ENSG00000184470.21	ENST00000400518.5:ENST00000542719.6:ENST00000474308.5:ENST00000400525.6:ENST00000400521.7:ENST00000400519.6:ENST00000491939.6:ENST00000334363.14:ENST00000496729.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	24	2	4.06299	4.112425	4.16186	0.0559439	0.026079	0.165463	0.133676
chr22	30014438	30014537	7498857	0	+	0.333333	(0.32,0.35]	chr22	765101	5	INTRON	INTRON	MTMR3	ENSG00000100330.16	ENST00000333027.7:ENST00000401950.7:ENST00000323630.9:ENST00000351488.7:ENST00000406629.1	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	4.06299	4.112425	4.16186	0.0559439	0.026079	0.165463	0.133676
chr3	58022753	58022853	1437556	0	+	0.34	(0.32,0.35]	chr3	151822	135	INTRON	INTRON	FLNB	ENSG00000136068.16	ENST00000682097.1:ENST00000358537.7:ENST00000429972.6:ENST00000490882.5:ENST00000683511.1:ENST00000295956.9:ENST00000684506.1:ENST00000684607.1:ENST00000682871.1:ENST00000682868.1:ENST00000684107.1:ENST00000684517.1:ENST00000682987.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	24	2	4.06299	4.112425	4.16186	0.0559439	0.026079	0.165463	0.133676
chr3	195379810	195379910	1895279	0	-	0.35	(0.32,0.35]	chr3	189674	217	INTRON	INTRON	ACAP2	ENSG00000114331.16	ENST00000326793.11:ENST00000635383.1:ENST00000480906.5:ENST00000481463.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	24	2	4.06299	4.112425	4.16186	0.0559439	0.026079	0.165463	0.133676
chr4	75643041	75643141	2161779	0	-	0.35	(0.32,0.35]	chr4	212947	13	UTR3	UTR3:EXON_MRNA	G3BP2	ENSG00000138757.15	ENST00000676666.1:ENST00000678062.1:ENST00000678100.1:ENST00000678122.1:ENST00000677265.1:ENST00000678971.1:ENST00000679281.1:ENST00000677333.1:ENST00000676470.1:ENST00000677620.1:ENST00000677606.1:ENST00000678798.1:ENST00000677583.1:ENST00000678447.1:ENST00000678875.1:ENST00000678244.1:ENST00000676974.1:ENST00000677003.1:ENST00000677889.1:ENST00000678329.1:ENST00000676584.1:ENST00000678552.1:ENST00000677192.1:ENST00000677727.1:ENST00000678265.1:ENST00000676839.1:ENST00000677876.1:ENST00000678123.1:ENST00000678578.1:ENST00000677171.1:ENST00000679329.1:ENST00000677794.1:ENST00000395719.7:ENST00000359707.9:ENST00000677060.1:ENST00000679294.1:ENST00000677201.1:ENST00000677952.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	24	2	4.06299	4.112425	4.16186	0.0559439	0.026079	0.165463	0.133676
chr5	37003061	37003160	2339711	0	+	0.333333	(0.32,0.35]	chr5	226031	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NIPBL	ENSG00000164190.19	ENST00000282516.13:ENST00000448238.2:ENST00000652901.1	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	4.06299	4.112425	4.16186	0.0559439	0.026079	0.165463	0.133676
chr6	3001061	3001159	2787858	0	+	0.346939	(0.32,0.35]	chr6	263216	3	INTRON	INTRON	NQO2	ENSG00000124588.22	ENST00000426637.5:ENST00000380472.7:ENST00000380455.11:ENST00000397717.7:ENST00000338130.7:ENST00000380441.5:ENST00000380454.8:ENST00000380430.6	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	4.06299	4.112425	4.16186	0.0559439	0.026079	0.165463	0.133676
chr7	133390754	133390854	3419545	0	+	0.33	(0.32,0.35]	chr7	319344	154	INTRON	INTRON	EXOC4	ENSG00000131558.15	ENST00000486013.5:ENST00000393161.6:ENST00000253861.5:ENST00000462055.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	24	2	4.06299	4.112425	4.16186	0.0559439	0.026079	0.165463	0.133676
chr7	148715594	148715693	3443854	0	+	0.333333	(0.32,0.35]	chr7	321168	151	INTRON	INTRON	CUL1	ENSG00000055130.18	ENST00000409469.5:ENST00000662716.1:ENST00000665936.1:ENST00000663044.1:ENST00000602748.5:ENST00000663835.1:ENST00000655324.1:ENST00000662132.1:ENST00000325222.9:ENST00000656001.1:ENST00000666124.1:ENST00000671421.1:ENST00000671397.1:ENST00000662670.1:ENST00000660240.1:ENST00000662975.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	24	2	4.06299	4.112425	4.16186	0.0559439	0.026079	0.165463	0.133676
chr8	140831026	140831125	4078359	0	-	0.323232	(0.32,0.35]	chr8	370509	1	INTRON	INTRON	PTK2	ENSG00000169398.20	ENST00000696786.1:ENST00000522684.5:ENST00000395218.3:ENST00000519654.5:ENST00000521059.5:ENST00000517887.5:ENST00000519993.5:ENST00000340930.7:ENST00000519419.5:ENST00000524202.5:ENST00000524357.5:ENST00000521791.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	24	2	4.06299	4.112425	4.16186	0.0559439	0.026079	0.165463	0.133676
chr9	26888801	26888899	4237576	0	-	0.336735	(0.32,0.35]	chr9	389570	9	INTRON	INTRON	CAAP1	ENSG00000120159.13	ENST00000333916.8:ENST00000650615.1:ENST00000625311.1:ENST00000520187.1:ENST00000483493.6:ENST00000495958.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	24	2	4.06299	4.112425	4.16186	0.0559439	0.026079	0.165463	0.133676
chr9	93584370	93584470	4159286	0	+	0.34	(0.32,0.35]	chr9	379230	71	INTRON	INTRON	PHF2	ENSG00000197724.11	ENST00000359246.9:ENST00000375376.8:ENST00000610682.1	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	4.06299	4.112425	4.16186	0.0559439	0.026079	0.165463	0.133676
chr9	123247156	123247256	4340267	0	-	0.35	(0.32,0.35]	chr9	398963	98	INTRON	INTRON	STRBP	ENSG00000165209.19	ENST00000348403.10:ENST00000360998.3:ENST00000407982.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	24	2	4.06299	4.112425	4.16186	0.0559439	0.026079	0.165463	0.133676
chrX	98837945	98838045	7693348	0	+	0.33	(0.32,0.35]	chrX	787215	525	INTRON	INTRON	ENSG00000281566	ENSG00000281566.3	ENST00000649508.1:ENST00000626665.3:ENST00000627700.2	lncRNA	lncRNA	lncRNA	lncRNA	0	24	2	4.06299	4.112425	4.16186	0.0559439	0.026079	0.165463	0.133676
chrX	131730714	131730814	7891983	0	-	0.33	(0.32,0.35]	chrX	803396	186	INTRON	INTRON	FIRRE	ENSG00000213468.7	ENST00000649541.1:ENST00000662867.1:ENST00000663405.1:ENST00000665076.1:ENST00000637577.2:ENST00000654978.1:ENST00000647966.1:ENST00000649391.1:ENST00000648028.2:ENST00000427391.2	lncRNA	lncRNA	lncRNA	lncRNA	0	24	2	4.06299	4.112425	4.16186	0.0559439	0.026079	0.165463	0.133676
chr1	20765176	20765276	389638	0	-	0.17	[0,0.28]	chr1	46538	4	SS5_PROX	SS5_PROX:INTRON	HP1BP3	ENSG00000127483.19	ENST00000438032.6:ENST00000312239.10:ENST00000375003.6:ENST00000419948.5:ENST00000424732.5	protein_coding	protein_coding	protein_coding	protein_coding	1	61	2	3.33854	4.112395	4.88625	0.0173315	0.00278022	0.104099	0.0488412
chr19	19392318	19392418	7035211	0	+	0.41	(0.408,0.44]	chr19	701429	58	INTRON	INTRON	GATAD2A	ENSG00000167491.18	ENST00000494516.6:ENST00000360315.7:ENST00000609040.5:ENST00000417582.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	48	2	3.20437	4.112325	5.02028	0.00306596	0.00303216	0.0509893	0.0493883
chr6	34921973	34922073	2849599	0	+	0.43	(0.408,0.44]	chr6	269222	320	INTRON	INTRON	ANKS1A	ENSG00000064999.15	ENST00000360359.5:ENST00000649117.1:ENST00000650178.1	protein_coding	protein_coding	protein_coding	protein_coding	1	48	2	3.20437	4.112325	5.02028	0.00306596	0.00303216	0.0509893	0.0493883
chr7	150275652	150275752	3673171	0	-	0.43	(0.408,0.44]	chr7	340876	262	INTRON	INTRON	ACTR3C	ENSG00000106526.11	ENST00000478393.5:ENST00000683684.1:ENST00000252071.8	protein_coding	protein_coding	protein_coding	protein_coding	4	169	2	3.50854	4.112285	4.71603	8.84313e-6	2.43492e-6	0.00213707	0.00108935
chr8	90365966	90366066	3793755	0	+	0.35	(0.32,0.35]	chr8	351792	139	INTRON	INTRON	LINC00534	ENSG00000253394.7	ENST00000662145.1:ENST00000655523.1:ENST00000517400.6:ENST00000658299.1:ENST00000663329.1:ENST00000658342.1:ENST00000523283.6:ENST00000655219.1:ENST00000662692.1:ENST00000667296.1:ENST00000667565.1:ENST00000523406.2:ENST00000659030.1:ENST00000653734.1:ENST00000654785.1:ENST00000524361.5:ENST00000668745.1:ENST00000661519.1:ENST00000671657.1:ENST00000655123.1:ENST00000663098.1:ENST00000670903.1:ENST00000654946.1	lncRNA	lncRNA	lncRNA	lncRNA	1	57	2	2.99125	4.11226	5.23327	0.00958447	9.33826e-4	0.0820838	0.0278746
chr6	4799903	4800003	2791097	0	+	0.27	[0,0.28]	chr6	263598	227	INTRON	INTRON	CDYL	ENSG00000153046.18	ENST00000328908.9:ENST00000491864.1:ENST00000440139.5:ENST00000483019.1:ENST00000397588.8:ENST00000472453.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	80	2	2.56073	4.11223	5.66373	0.00743095	0.00196371	0.0772645	0.0401678
chr11	47419863	47419963	4949415	0	-	0.44	(0.408,0.44]	chr11	464089	2	SS5_PROX	SS5_PROX:INTRON	PSMC3	ENSG00000165916.9	ENST00000619920.4:ENST00000602866.5:ENST00000298852.8:ENST00000530912.5	protein_coding	protein_coding	protein_coding	protein_coding	1	48	2	3.08738	4.1122	5.13702	0.00478231	0.00202889	0.0636201	0.04086
chr7	99110862	99110962	3582811	0	-	0.43	(0.408,0.44]	chr7	333700	296	INTRON	INTRON	SMURF1	ENSG00000198742.10	ENST00000361368.7:ENST00000361125.1:ENST00000472627.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	48	2	3.08738	4.1122	5.13702	0.00478231	0.00202889	0.0636201	0.04086
chr7	111197113	111197213	3620453	0	-	0.44	(0.408,0.44]	chr7	337093	2332	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	48	2	3.08738	4.1122	5.13702	0.00478231	0.00202889	0.0636201	0.04086
chr1	99738863	99738958	515053	0	-	0.326316	(0.32,0.35]	chr1	60382	2	INTRON	INTRON	FRRS1	ENSG00000156869.14	ENST00000646001.2:ENST00000287474.9	protein_coding	protein_coding	protein_coding	protein_coding	2	74	2	3.14789	4.11209	5.07629	0.00468114	5.00642e-4	0.0600108	0.020217099999999998
chr1	110355775	110355875	182508	0	+	0.34	(0.32,0.35]	chr1	20253	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	LAMTOR5-AS1	ENSG00000224699.10	ENST00000626572.2	lncRNA	lncRNA	lncRNA	lncRNA	1	53	2	2.84569	4.11201	5.37833	0.0121137	0.00174321	0.0962599	0.0375363
chr9	5698106	5698205	4097995	0	+	0.353535	(0.35,0.378]	chr9	373384	77	INTRON	INTRON	RIC1	ENSG00000107036.12	ENST00000251879.10:ENST00000414202.7:ENST00000418622.7:ENST00000545641.5	protein_coding	protein_coding	protein_coding	protein_coding	1	51	2	3.36514	4.11192	4.8587	0.00695662	0.00173699	0.0718189	0.03851
chr10	11860445	11860543	4556183	0	-	0.5	(0.476,0.515]	chr10	420482	27	INTRON	INTRON	PROSER2-AS1	ENSG00000225778.5	ENST00000445498.5:ENST00000453242.1	lncRNA	lncRNA	lncRNA	lncRNA	1	51	2	2.82673	4.11191	5.39709	0.0134403	2.55871e-4	0.0946278	0.0142249
chr6	158788648	158788717	3253028	0	-	0.26087	[0,0.28]	chr6	302373	2	SS3_PROX	SS3_PROX:INTRON	EZR	ENSG00000092820.19	ENST00000337147.11:ENST00000367075.4:ENST00000476189.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	81	2	2.78941	4.111845000000001	5.43428	0.00400834	0.00320409	0.0551303	0.0521823
chr7	6036723	6036823	3476010	0	-	0.26	[0,0.28]	chr7	325180	73	INTRON	INTRON	EIF2AK1	ENSG00000086232.13	ENST00000199389.11	protein_coding	protein_coding	protein_coding	protein_coding	2	81	2	2.78941	4.111845000000001	5.43428	0.00400834	0.00320409	0.0551303	0.0521823
chr5	203213	203312	2563931	0	-	0.383838	(0.378,0.408]	chr5	245399	65	UTR3	UTR3:EXON_MRNA	CCDC127	ENSG00000164366.4	ENST00000296824.4	protein_coding	protein_coding	protein_coding	protein_coding	1	51	2	2.71183	4.111784999999999	5.51174	0.0170789	5.93655e-4	0.110899	0.0225024
chr11	3366053	3366152	4893716	0	-	0.515152	(0.476,0.515]	chr11	458671	36	EXON_MRNA	EXON_MRNA:INTRON	ZNF195	ENSG00000005801.18	ENST00000528796.5:ENST00000399602.9:ENST00000354599.10:ENST00000343338.11:ENST00000620374.4:ENST00000649622.1:ENST00000429541.6:ENST00000005082.13:ENST00000526601.5:ENST00000438262.6:ENST00000528410.5:ENST00000528218.5:ENST00000529789.5:ENST00000525313.6:ENST00000533036.5:ENST00000529228.5:ENST00000529678.5:ENST00000528636.1:ENST00000427810.6:ENST00000534569.5:ENST00000524857.5:ENST00000530643.5:ENST00000618467.4:ENST00000330692.11	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	51	2	3.10264	4.11168	5.12072	0.00543163	8.42139e-4	0.0645052	0.0263691
chr1	235433444	235433539	340350	0	+	0.515789	(0.515,0.57]	chr1	39604	2	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	TBCE	ENSG00000285053.1:ENSG00000284770.2	ENST00000644055.1:ENST00000645655.1:ENST00000647428.1:ENST00000643418.1:ENST00000646624.1:ENST00000647186.1:ENST00000646528.1:ENST00000645351.1:ENST00000643410.1:ENST00000645205.1:ENST00000645836.1:ENST00000642503.1:ENST00000646281.1:ENST00000644680.1:ENST00000645578.1:ENST00000642431.1:ENST00000644604.1:ENST00000651186.1:ENST00000643125.1:ENST00000406207.5:ENST00000642463.1:ENST00000645899.1:ENST00000647233.1:ENST00000644578.1:ENST00000647418.1:ENST00000645372.1:ENST00000645582.1:ENST00000643994.1:ENST00000642610.2:ENST00000644037.1:ENST00000646463.1:ENST00000366601.8:ENST00000643524.1:ENST00000646536.1:ENST00000643142.1:ENST00000644838.1:ENST00000646286.1:ENST00000646186.1:ENST00000643615.1:ENST00000543662.4:ENST00000646848.1:ENST00000647332.1:ENST00000645551.1:ENST00000646821.1:ENST00000472011.6:ENST00000643238.1:ENST00000646104.1:ENST00000645662.1:ENST00000643993.1:ENST00000645964.1:ENST00000642339.1:ENST00000644217.1:ENST00000642372.1:ENST00000644265.1:ENST00000482230.6:ENST00000644910.1:ENST00000646842.1:ENST00000647322.1:ENST00000644126.1:ENST00000643487.1:ENST00000642764.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	44	2	3.31388	4.1114999999999995	4.90912	0.0021669	0.00174704	0.0417866	0.0386026
chr16	67195380	67195480	6366775	0	+	0.55	(0.515,0.57]	chr16	611581	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	E2F4	ENSG00000205250.9	ENST00000379378.8:ENST00000567007.5:ENST00000568839.5:ENST00000569573.1:ENST00000565226.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	44	2	3.31388	4.1114999999999995	4.90912	0.0021669	0.00174704	0.0417866	0.0386026
chr2	235898241	235898341	1045395	0	+	0.4	(0.378,0.408]	chr2	111296	144	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000336665.9:ENST00000635100.1:ENST00000409538.5:ENST00000614409.4:ENST00000428334.6:ENST00000448025.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	54	2	3.23708	4.111475	4.98587	0.00365053	0.00152268	0.0535094	0.0360297
chr5	32590567	32590666	2334802	0	+	0.353535	(0.35,0.378]	chr5	225358	16	INTRON	INTRON	SUB1	ENSG00000113387.12	ENST00000506237.5:ENST00000512913.5:ENST00000513013.5:ENST00000265073.9:ENST00000511615.5:ENST00000515355.5:ENST00000502897.5:ENST00000510442.1:ENST00000504789.5:ENST00000511988.5:ENST00000504016.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	51	2	2.86451	4.111395	5.35828	0.0109111	0.00135282	0.0923273	0.0336321
chr7	135610941	135611040	3428871	0	+	0.363636	(0.35,0.378]	chr7	319741	32	INTRON	INTRON	NUP205	ENSG00000155561.15	ENST00000285968.11:ENST00000607647.5:ENST00000472132.5:ENST00000463247.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	51	2	2.86451	4.111395	5.35828	0.0109111	0.00135282	0.0923273	0.0336321
chr1	212754393	212754493	634406	0	-	0.47	(0.44,0.476]	chr1	74949	144	INTRON	INTRON	NSL1	ENSG00000117697.15	ENST00000366977.8:ENST00000366978.5:ENST00000366976.3:ENST00000626725.1	protein_coding	protein_coding	protein_coding	protein_coding	4	88	2	2.41628	4.111375	5.80647	0.00156262	1.22335e-4	0.0365263	0.00993581
chr3	128911410	128911510	1498574	0	+	0.52	(0.515,0.57]	chr3	156499	7	EXON_MRNA	EXON_MRNA:INTRON	ACAD9	ENSG00000177646.20	ENST00000681583.1:ENST00000681367.1:ENST00000679613.1:ENST00000680636.1:ENST00000511325.2:ENST00000681319.1:ENST00000681585.1:ENST00000681784.1:ENST00000308982.12:ENST00000679399.1:ENST00000681552.1:ENST00000511227.5:ENST00000679990.1:ENST00000681886.1:ENST00000679431.1:ENST00000680764.1:ENST00000505867.5:ENST00000680744.1:ENST00000679824.1:ENST00000679715.1:ENST00000511526.5:ENST00000508971.1:ENST00000680638.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	44	2	3.05839	4.11126	5.16413	0.00485936	8.14815e-4	0.0640618	0.0263656
chr8	98599742	98599842	3997892	0	-	0.53	(0.515,0.57]	chr8	366052	32	INTRON	INTRON	STK3	ENSG00000104375.17	ENST00000617590.1:ENST00000419617.7:ENST00000523601.5:ENST00000518582.5:ENST00000523159.5:ENST00000518165.5:ENST00000518627.5:ENST00000521649.5:ENST00000521768.5:ENST00000520653.1:ENST00000424861.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	44	2	3.05839	4.11126	5.16413	0.00485936	8.14815e-4	0.0640618	0.0263656
chr12	119810620	119810720	5431600	0	-	0.5	(0.476,0.515]	chr12	518974	62	INTRON	INTRON	CIT	ENSG00000122966.17	ENST00000392521.7:ENST00000261833.11:ENST00000612548.4:ENST00000536325.1	protein_coding	protein_coding	protein_coding	protein_coding	2	64	2	2.76855	4.111225	5.4539	0.00244302	5.16081e-4	0.0456956	0.0208667
chr12	123458547	123458631	5242843	0	+	0.404762	(0.378,0.408]	chr12	498227	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SNRNP35	ENSG00000184209.15	ENST00000529904.2:ENST00000527158.2:ENST00000529201.1:ENST00000526639.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	72	2	2.73557	4.1111450000000005	5.48672	0.00360869	1.83012e-4	0.0533855	0.01176
chr16	21514629	21514729	6461503	0	-	0.49	(0.476,0.515]	chr16	623383	81	INTRON	INTRON	SMG1P3	ENSG00000180747.15	ENST00000522841.6:ENST00000437413.2:ENST00000435197.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	8	129	2	2.27287	4.11112	5.94937	4.80719e-4	5.50774e-5	0.0199108	0.0065165
chr22	41942212	41942311	7592198	0	-	0.575758	(0.57,1]	chr22	777596	21	INTRON	INTRON	CENPM	ENSG00000100162.15	ENST00000215980.10:ENST00000402338.5:ENST00000404067.5:ENST00000407253.7:ENST00000402420.1	protein_coding	protein_coding	protein_coding	protein_coding	2	45	2	3.25883	4.111095	4.96336	2.05554e-4	1.51392e-4	0.0124557	0.0112689
chr3	6507648	6507748	1356315	0	+	0.6	(0.57,1]	chr3	142500	164	INTRON	INTRON	ENSG00000189229	ENSG00000189229.12	ENST00000660158.1:ENST00000433639.1:ENST00000655754.1:ENST00000653839.1:ENST00000662846.1:ENST00000659876.1:ENST00000414438.2:ENST00000658468.1:ENST00000414603.1	lncRNA	lncRNA	lncRNA	lncRNA	10	187	2	3.39665	4.111075	4.8255	2.21351e-8	4.71611e-10	5.48974e-5	2.97502e-6
chr16	3689811	3689911	6434195	0	-	0.49	(0.476,0.515]	chr16	619362	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	TRAP1	ENSG00000126602.11	ENST00000246957.10:ENST00000538171.5:ENST00000571804.5:ENST00000574941.5:ENST00000576106.5:ENST00000571538.5:ENST00000571011.1:ENST00000570403.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	56	2	3.60627	4.11073	4.61519	0.00528365	7.49088e-4	0.0656295	0.0251179
chr1	35870601	35870700	70510	0	+	0.313131	(0.28,0.32]	chr1	9024	3	INTRON	INTRON	AGO1	ENSG00000092847.13	ENST00000373206.5	protein_coding	protein_coding	protein_coding	protein_coding	1	60	2	2.73077	4.110685	5.4906	0.0220748	4.89126e-4	0.115395	0.0199693
chr1	45599884	45599984	93361	0	+	0.32	(0.28,0.32]	chr1	12580	1	SS3_PROX	SS3_PROX:INTRON	NASP	ENSG00000132780.17	ENST00000437901.6:ENST00000537798.5:ENST00000437362.6:ENST00000350030.8:ENST00000464190.6:ENST00000527359.5:ENST00000528084.5:ENST00000453748.5:ENST00000525515.5:ENST00000527470.5:ENST00000529333.5:ENST00000531532.5:ENST00000530840.5:ENST00000528238.5:ENST00000534101.1:ENST00000470768.5:ENST00000372052.8:ENST00000351223.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	60	2	2.73077	4.110685	5.4906	0.0220748	4.89126e-4	0.115395	0.0199693
chr12	104461626	104461726	5210730	0	+	0.38	(0.378,0.408]	chr12	493315	37	INTRON	INTRON	CHST11	ENSG00000171310.11	ENST00000303694.6:ENST00000547956.1:ENST00000549260.5:ENST00000546689.1	protein_coding	protein_coding	protein_coding	protein_coding	1	49	2	2.9917	4.110469999999999	5.22924	0.0068789	0.00172721	0.0749442	0.0374701
chr21	9117576	9117675	7426515	0	-	0.646465	(0.57,1]	chr21	757579	293	INTRON	INTRON	TEKT4P2	ENSG00000188681.12	ENST00000690061.1:ENST00000689141.1:ENST00000688310.1:ENST00000687537.1:ENST00000690096.1:ENST00000687888.1:ENST00000690389.1:ENST00000684989.1:ENST00000416067.6:ENST00000693307.1:ENST00000692383.1:ENST00000685666.1:ENST00000688451.1:ENST00000691190.1:ENST00000685532.1:ENST00000687488.1:ENST00000690713.1:ENST00000691834.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	1	33	2	3.34751	4.11042	4.87333	0.00122677	3.21412e-4	0.0320791	0.0159645
chr8	47973464	47973564	3752176	0	+	0.49	(0.476,0.515]	chr8	349018	4	SS5_PROX	SS5_PROX:INTRON	MCM4	ENSG00000104738.18	ENST00000649838.1:ENST00000648407.1:ENST00000649919.1:ENST00000262105.6:ENST00000649973.1:ENST00000648519.1:ENST00000650216.1:ENST00000647877.1:ENST00000520637.2:ENST00000518382.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	371	2	3.7481	4.11026	4.47242	3.93244e-7	5.02948e-9	3.25096e-4	1.70082e-5
chr1	246118203	246118303	676814	0	-	0.3	(0.28,0.32]	chr1	79721	219	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000391836.3:ENST00000453676.5:ENST00000462422.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	55	2	3.17453	4.1101600000000005	5.04579	0.00714672	0.00429297	0.0723634	0.0599065
chr12	116172201	116172301	5424491	0	-	0.3	(0.28,0.32]	chr12	518263	603	INTRON	INTRON	MED13L	ENSG00000123066.9	ENST00000281928.9:ENST00000650226.1:ENST00000548743.2:ENST00000647567.1:ENST00000551197.2	protein_coding	protein_coding	protein_coding	protein_coding	1	55	2	3.17453	4.1101600000000005	5.04579	0.00714672	0.00429297	0.0723634	0.0599065
chr16	16527408	16527508	6311136	0	+	0.42	(0.408,0.44]	chr16	604098	274	INTRON	INTRON	ENSG00000260126	ENSG00000260126.2	ENST00000567465.2	lncRNA	lncRNA	lncRNA	lncRNA	1	53	2	2.58624	4.11009	5.63394	0.0273686	7.78928e-5	0.123904	0.00735438
chr15	27110593	27110693	5983549	0	+	0.29	(0.28,0.32]	chr15	569164	834	INTRON	INTRON	GABRG3	ENSG00000182256.13	ENST00000615808.5:ENST00000555083.5	protein_coding	protein_coding	protein_coding	protein_coding	1	55	2	2.91832	4.109925	5.30153	0.0102484	0.00332518	0.089002	0.0512081
chr8	105685508	105685607	3840923	0	+	0.30303	(0.28,0.32]	chr8	354094	66	INTRON	INTRON	ZFPM2	ENSG00000169946.14	ENST00000407775.7:ENST00000520492.5:ENST00000511341.6:ENST00000517361.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	55	2	2.91832	4.109925	5.30153	0.0102484	0.00332518	0.089002	0.0512081
chr4	112597146	112597246	2228491	0	-	0.46	(0.44,0.476]	chr4	218161	69	INTRON	INTRON	ZGRF1	ENSG00000138658.16	ENST00000445203.6:ENST00000505019.6:ENST00000473015.5:ENST00000309071.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	52	2	3.22192	4.10987	4.99782	0.00360821	0.0013223	0.0533855	0.0333932
chr8	11828863	11828961	3702795	0	+	0.367347	(0.35,0.378]	chr8	343519	23	INTRON	INTRON	FDFT1	ENSG00000079459.13	ENST00000538689.4:ENST00000615631.4:ENST00000618539.4:ENST00000623368.3:ENST00000446331.6:ENST00000443614.6:ENST00000220584.9:ENST00000525607.5:ENST00000525283.5:ENST00000529464.5:ENST00000525900.5:ENST00000528812.5:ENST00000622850.2:ENST00000530664.5:ENST00000525954.5:ENST00000532266.5:ENST00000528643.5:ENST00000525777.5:ENST00000528729.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	52	2	3.49967	4.1096	4.71953	0.0103314	9.80974e-4	0.0850389	0.0287765
chr1	50498396	50498496	447620	0	-	0.32	(0.28,0.32]	chr1	54177	62	INTRON	INTRON	FAF1	ENSG00000185104.21	ENST00000396153.7:ENST00000494400.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	25	2	3.88145	4.1095500000000005	4.33765	0.0561985	0.039714	0.18407	0.143072
chr1	180496025	180496123	595768	0	-	0.285714	(0.28,0.32]	chr1	71210	1	INTRON	INTRON	ACBD6	ENSG00000230124.8	ENST00000645415.1:ENST00000642319.1:ENST00000367595.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	25	2	3.88145	4.1095500000000005	4.33765	0.0561985	0.039714	0.18407	0.143072
chr13	50491051	50491150	5495096	0	+	0.30303	(0.28,0.32]	chr13	526168	156	INTRON	INTRON	DLEU1	ENSG00000176124.15	ENST00000467721.5:ENST00000468522.5:ENST00000490577.5:ENST00000491341.5:ENST00000491615.5:ENST00000463474.7:ENST00000468168.5:ENST00000476738.5:ENST00000461527.7:ENST00000485007.5:ENST00000475913.5:ENST00000470726.7:ENST00000479420.5:ENST00000474630.6:ENST00000491482.5:ENST00000647700.1:ENST00000484869.6:ENST00000469095.6:ENST00000462427.2:ENST00000470593.5:ENST00000472136.5:ENST00000460525.6	lncRNA	lncRNA	lncRNA	lncRNA	0	25	2	3.88145	4.1095500000000005	4.33765	0.0561985	0.039714	0.18407	0.143072
chr16	18916576	18916676	6458012	0	-	0.29	(0.28,0.32]	chr16	622895	50	INTRON	INTRON	SMG1	ENSG00000157106.18	ENST00000446231.7:ENST00000532700.6:ENST00000569122.1	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	3.88145	4.1095500000000005	4.33765	0.0561985	0.039714	0.18407	0.143072
chr16	31891048	31891148	6341980	0	+	0.29	(0.28,0.32]	chr16	608570	4	INTRON	INTRON	ZNF267	ENSG00000185947.15	ENST00000300870.15:ENST00000394846.7:ENST00000566541.5:ENST00000561814.1:ENST00000562971.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	25	2	3.88145	4.1095500000000005	4.33765	0.0561985	0.039714	0.18407	0.143072
chr2	68224722	68224822	1146246	0	-	0.31	(0.28,0.32]	chr2	122396	72	INTRON	INTRON	PPP3R1	ENSG00000221823.11	ENST00000234310.8:ENST00000409752.5:ENST00000409377.1	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	3.88145	4.1095500000000005	4.33765	0.0561985	0.039714	0.18407	0.143072
chr20	35406054	35406153	7335150	0	-	0.313131	(0.28,0.32]	chr20	747197	115	INTRON	INTRON	UQCC1	ENSG00000101019.22	ENST00000374380.6:ENST00000374394.7:ENST00000374384.6:ENST00000359226.6:ENST00000349714.9:ENST00000457259.5:ENST00000374385.10:ENST00000453855.5:ENST00000424405.5:ENST00000443429.5:ENST00000438533.5:ENST00000397554.5:ENST00000491125.5:ENST00000491040.5:ENST00000397553.6:ENST00000495752.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	25	2	3.88145	4.1095500000000005	4.33765	0.0561985	0.039714	0.18407	0.143072
chr3	12527388	12527488	1367721	0	+	0.3	(0.28,0.32]	chr3	144028	78	INTRON	INTRON	TSEN2	ENSG00000154743.19	ENST00000681482.1:ENST00000446004.6:ENST00000679699.1:ENST00000681713.1:ENST00000680458.1:ENST00000680923.1:ENST00000679670.1:ENST00000680817.1:ENST00000412698.3:ENST00000455118.6:ENST00000680765.1:ENST00000415684.6:ENST00000681343.1:ENST00000679424.1:ENST00000680126.1:ENST00000679756.1:ENST00000475595.2:ENST00000681433.1:ENST00000680376.1:ENST00000680873.1:ENST00000681073.1:ENST00000454502.6:ENST00000284995.11:ENST00000402228.7:ENST00000680275.1:ENST00000679995.1:ENST00000681676.1:ENST00000473755.5:ENST00000679492.1:ENST00000681042.1:ENST00000680857.1:ENST00000679690.1:ENST00000679555.1:ENST00000681140.1:ENST00000679425.1:ENST00000680264.1:ENST00000680449.1:ENST00000681471.1:ENST00000680598.1:ENST00000679693.1:ENST00000679876.1:ENST00000444864.6:ENST00000679367.1:ENST00000681268.1:ENST00000680421.1:ENST00000680555.1:ENST00000679785.1:ENST00000679835.1:ENST00000680943.1:ENST00000681227.1:ENST00000680419.1:ENST00000680986.1:ENST00000680354.1:ENST00000679420.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	25	2	3.88145	4.1095500000000005	4.33765	0.0561985	0.039714	0.18407	0.143072
chr3	65426324	65426423	1724842	0	-	0.30303	(0.28,0.32]	chr3	176413	245	INTRON	INTRON	MAGI1	ENSG00000151276.24	ENST00000330909.12:ENST00000402939.7:ENST00000621418.4:ENST00000611645.4:ENST00000463103.6:ENST00000483466.5:ENST00000460329.6:ENST00000497477.6:ENST00000472257.5	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	3.88145	4.1095500000000005	4.33765	0.0561985	0.039714	0.18407	0.143072
chr4	67535574	67535673	2153415	0	-	0.282828	(0.28,0.32]	chr4	211997	43	INTRON	INTRON	CENPC	ENSG00000145241.11	ENST00000273853.11:ENST00000506882.5:ENST00000510189.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	25	2	3.88145	4.1095500000000005	4.33765	0.0561985	0.039714	0.18407	0.143072
chr4	108073390	108073489	2223236	0	-	0.292929	(0.28,0.32]	chr4	217701	6	INTRON	INTRON	LEF1	ENSG00000138795.10	ENST00000379951.6:ENST00000265165.6:ENST00000503879.5:ENST00000505379.5:ENST00000514444.5:ENST00000510135.5:ENST00000438313.6:ENST00000509428.5:ENST00000510624.5:ENST00000506680.5:ENST00000505328.1:ENST00000504775.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	25	2	3.88145	4.1095500000000005	4.33765	0.0561985	0.039714	0.18407	0.143072
chr5	53934620	53934720	2617150	0	-	0.32	(0.28,0.32]	chr5	248835	226	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	25	2	3.88145	4.1095500000000005	4.33765	0.0561985	0.039714	0.18407	0.143072
chr6	3134373	3134473	2788764	0	+	0.29	(0.28,0.32]	chr6	263396	48	INTRON	INTRON	BPHL	ENSG00000137274.13	ENST00000434640.5:ENST00000430655.6:ENST00000424847.6:ENST00000433912.5:ENST00000380379.10:ENST00000490918.5:ENST00000380368.6:ENST00000380375.4:ENST00000488487.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	25	2	3.88145	4.1095500000000005	4.33765	0.0561985	0.039714	0.18407	0.143072
chr7	64337267	64337362	3319675	0	+	0.294737	(0.28,0.32]	chr7	308634	4	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	ZNF736	ENSG00000234444.10	ENST00000355095.8:ENST00000423484.3:ENST00000488621.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	25	2	3.88145	4.1095500000000005	4.33765	0.0561985	0.039714	0.18407	0.143072
chr2	152746132	152746231	894533	0	+	0.454545	(0.44,0.476]	chr2	99130	89	INTRON	INTRON	ARL6IP6	ENSG00000177917.12	ENST00000690727.1:ENST00000685752.1:ENST00000688293.1:ENST00000686839.1:ENST00000689155.1:ENST00000691702.1:ENST00000691523.1:ENST00000688012.1:ENST00000687504.1:ENST00000455875.6:ENST00000692399.1:ENST00000425034.6:ENST00000686080.1:ENST00000326446.10:ENST00000463690.2:ENST00000688130.1:ENST00000495469.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	49	2	2.81896	4.1094800000000005	5.4	0.0120766	7.02611e-4	0.0962311	0.024224
chr17	49726613	49726712	6793777	0	-	0.515152	(0.476,0.515]	chr17	670414	22	INTRON	INTRON	FAM117A	ENSG00000121104.8	ENST00000240364.7:ENST00000513602.5:ENST00000503855.5:ENST00000514018.5:ENST00000505159.5:ENST00000506156.1:ENST00000515240.5:ENST00000509347.5:ENST00000503720.1:ENST00000514841.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	48	2	3.2463	4.109415	4.97253	0.00311573	0.00262374	0.0498063	0.0470772
chr13	110895223	110895321	5650443	0	-	0.408163	(0.378,0.408]	chr13	538355	7	EXON_LNCRNA	EXON_LNCRNA:INTRON	ANKRD10:ANKRD10-IT1	ENSG00000088448.14:ENSG00000229152.2	ENST00000267339.6:ENST00000489973.6:ENST00000310847.8:ENST00000465753.1:ENST00000475809.1:ENST00000494859.5:ENST00000426991.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:nonsense_mediated_decay:lncRNA:processed_transcript	13	336	2	2.68509	4.10929	5.53349	1.10786e-5	1.44736e-8	0.00245389	3.74243e-5
chr1	235277042	235277142	663351	0	-	0.43	(0.408,0.44]	chr1	78552	159	INTRON	INTRON	ARID4B	ENSG00000054267.22	ENST00000349213.7:ENST00000366603.6:ENST00000264183.9:ENST00000421364.5:ENST00000491632.5:ENST00000418304.1:ENST00000466653.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	64	2	2.82511	4.109155	5.3932	0.00189528	7.81492e-4	0.0402736	0.0257168
chr16	67962806	67962900	6506230	0	-	0.468085	(0.44,0.476]	chr16	629870	7	EXON_MRNA	EXON_MRNA:INTRON	SLC12A4	ENSG00000124067.17	ENST00000422611.6:ENST00000316341.8:ENST00000572037.5:ENST00000541864.6:ENST00000570802.5:ENST00000576616.5:ENST00000537830.6:ENST00000573023.6:ENST00000576377.1:ENST00000571299.5:ENST00000572010.5:ENST00000576462.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	105	2	4.03457	4.10914	4.18371	1.03446e-4	2.6221e-5	0.00915599	0.00402631
chr2	175081863	175081963	1271458	0	-	0.46	(0.44,0.476]	chr2	134392	7	INTRON	INTRON	ATF2	ENSG00000115966.18	ENST00000345739.9:ENST00000426833.7:ENST00000264110.7:ENST00000409437.5:ENST00000409635.5:ENST00000435004.6:ENST00000428760.5:ENST00000392544.5:ENST00000417080.5:ENST00000456655.5:ENST00000421438.5:ENST00000429579.5:ENST00000415955.5:ENST00000409499.5:ENST00000478905.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	69	2	2.67282	4.1089400000000005	5.54506	0.00433875	1.21665e-4	0.0579868	0.00942499
chr14	103342045	103342144	5825586	0	+	0.292929	(0.28,0.32]	chr14	552769	11	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	EIF5	ENSG00000100664.11	ENST00000216554.8:ENST00000392715.6:ENST00000558506.1:ENST00000561406.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	132	2	4.10834	4.1086849999999995	4.10903	1.53575e-4	7.08337e-5	0.0113219	0.00695952
chr1	91829315	91829415	504051	0	-	0.43	(0.408,0.44]	chr1	59635	279	INTRON	INTRON	TGFBR3	ENSG00000069702.11	ENST00000212355.9:ENST00000533089.5:ENST00000370399.6:ENST00000525962.5:ENST00000532540.5:ENST00000465892.6:ENST00000417833.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	48	2	3.02513	4.108575	5.19202	0.0059965	0.0016671	0.0700606	0.0369207
chr7	105244214	105244314	3602452	0	-	0.44	(0.408,0.44]	chr7	336137	373	INTRON	INTRON	SRPK2	ENSG00000135250.17	ENST00000393651.8:ENST00000357311.7:ENST00000489828.5:ENST00000482897.5:ENST00000460391.5:ENST00000462282.5:ENST00000465112.5:ENST00000482862.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	48	2	3.02513	4.108575	5.19202	0.0059965	0.0016671	0.0700606	0.0369207
chr1	78011560	78011659	148896	0	+	0.515152	(0.476,0.515]	chr1	16588	59	INTRON	INTRON	DNAJB4	ENSG00000162616.9	ENST00000487931.1:ENST00000477671.2:ENST00000484662.1:ENST00000426517.1:ENST00000476396.1:ENST00000370763.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	23	2	3.97201	4.10851	4.24501	0.030904	0.0247713	0.143385	0.12011
chr1	161827234	161827334	236468	0	+	0.48	(0.476,0.515]	chr1	28572	57	INTRON	INTRON	ATF6	ENSG00000118217.7	ENST00000680688.1:ENST00000679853.1:ENST00000681738.1:ENST00000681801.1:ENST00000681779.1:ENST00000367942.4:ENST00000681001.1:ENST00000679886.1:ENST00000681169.1:ENST00000681492.1:ENST00000680481.1:ENST00000680180.1:ENST00000681187.1:ENST00000680462.1:ENST00000681557.1:ENST00000681912.1:ENST00000679833.1:ENST00000681541.1:ENST00000681036.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	23	2	3.97201	4.10851	4.24501	0.030904	0.0247713	0.143385	0.12011
chr11	17339124	17339224	4748739	0	+	0.5	(0.476,0.515]	chr11	439570	12	INTRON	INTRON	NUCB2	ENSG00000070081.18	ENST00000646648.1:ENST00000532240.2	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	0	23	2	3.97201	4.10851	4.24501	0.030904	0.0247713	0.143385	0.12011
chr12	57942388	57942485	5149338	0	+	0.505155	(0.476,0.515]	chr12	487237	1	INTRON	INTRON	ATP23	ENSG00000166896.9	ENST00000647763.1:ENST00000551997.1:ENST00000300145.4:ENST00000549257.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	23	2	3.97201	4.10851	4.24501	0.030904	0.0247713	0.143385	0.12011
chr13	95229423	95229523	5639152	0	-	0.5	(0.476,0.515]	chr13	537151	183	INTRON	INTRON	ABCC4	ENSG00000125257.16	ENST00000645237.2:ENST00000643051.1:ENST00000643842.1:ENST00000646439.1:ENST00000643816.1:ENST00000536256.3:ENST00000643556.1:ENST00000629385.1:ENST00000642524.1:ENST00000645532.1:ENST00000644471.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	23	2	3.97201	4.10851	4.24501	0.030904	0.0247713	0.143385	0.12011
chr15	52055633	52055733	6029389	0	+	0.48	(0.476,0.515]	chr15	574447	51	INTRON	INTRON	MAPK6	ENSG00000069956.14	ENST00000691380.1:ENST00000681888.1:ENST00000261845.7:ENST00000680066.1:ENST00000680777.1:ENST00000680652.1	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	3.97201	4.10851	4.24501	0.030904	0.0247713	0.143385	0.12011
chr16	3658601	3658692	6433853	0	-	0.494505	(0.476,0.515]	chr16	619261	4	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TRAP1	ENSG00000126602.11	ENST00000575707.5:ENST00000246957.10:ENST00000538171.5:ENST00000575671.5:ENST00000574494.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	23	2	3.97201	4.10851	4.24501	0.030904	0.0247713	0.143385	0.12011
chr16	29796492	29796592	6335640	0	+	0.49	(0.476,0.515]	chr16	606840	2	SS3_PROX	SS3_PROX:INTRON	KIF22	ENSG00000079616.14	ENST00000690258.1:ENST00000691169.1:ENST00000689089.1:ENST00000689743.1:ENST00000685526.1:ENST00000563666.2:ENST00000691128.1:ENST00000691895.1:ENST00000685401.1:ENST00000689660.1:ENST00000569382.3:ENST00000689172.1:ENST00000686384.1:ENST00000691203.1:ENST00000160827.9:ENST00000693260.1:ENST00000690510.1:ENST00000569636.7:ENST00000570173.6:ENST00000690419.1:ENST00000689107.1:ENST00000561482.6:ENST00000400751.9:ENST00000563263.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	23	2	3.97201	4.10851	4.24501	0.030904	0.0247713	0.143385	0.12011
chr17	2039359	2039457	6546894	0	+	0.489796	(0.476,0.515]	chr17	635071	5	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	DPH1	ENSG00000108963.19	ENST00000674200.2:ENST00000263083.12:ENST00000571418.7:ENST00000575667.6:ENST00000570477.6:ENST00000570833.5:ENST00000572214.6:ENST00000570867.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	23	2	3.97201	4.10851	4.24501	0.030904	0.0247713	0.143385	0.12011
chr17	4327281	4327381	6711968	0	-	0.49	(0.476,0.515]	chr17	657718	198	INTRON	INTRON	UBE2G1	ENSG00000132388.13	ENST00000396981.7:ENST00000572484.5:ENST00000574633.5:ENST00000571980.1:ENST00000571953.5:ENST00000574059.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	23	2	3.97201	4.10851	4.24501	0.030904	0.0247713	0.143385	0.12011
chr17	39655713	39655811	6608251	0	+	0.479592	(0.476,0.515]	chr17	643408	16	INTRON	INTRON	STARD3	ENSG00000131748.16	ENST00000578232.5:ENST00000580551.5:ENST00000578254.5:ENST00000544210.6:ENST00000578577.5:ENST00000583582.5:ENST00000581894.5:ENST00000336308.10:ENST00000394250.8:ENST00000577248.5:ENST00000579479.5:ENST00000580611.5:ENST00000585214.5:ENST00000583718.5:ENST00000580331.5:ENST00000583419.5:ENST00000484773.6:ENST00000488876.5:ENST00000443521.1:ENST00000460894.6:ENST00000582874.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	23	2	3.97201	4.10851	4.24501	0.030904	0.0247713	0.143385	0.12011
chr17	47613268	47613368	6622443	0	+	0.5	(0.476,0.515]	chr17	645959	2	SS3_PROX	SS3_PROX:INTRON	NPEPPS	ENSG00000141279.17	ENST00000677710.1:ENST00000530173.6:ENST00000677226.1:ENST00000322157.9:ENST00000678461.1:ENST00000677120.1:ENST00000678909.1:ENST00000678496.1:ENST00000678262.1:ENST00000677370.1:ENST00000677664.1:ENST00000676492.1:ENST00000530514.6:ENST00000678902.1:ENST00000525048.5:ENST00000531486.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	23	2	3.97201	4.10851	4.24501	0.030904	0.0247713	0.143385	0.12011
chr19	19336382	19336478	7034895	0	+	0.489583	(0.476,0.515]	chr19	701342	2	SS5_PROX	SS5_PROX:INTRON	MAU2	ENSG00000129933.21	ENST00000262815.13:ENST00000609122.5:ENST00000586189.7:ENST00000592069.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	23	2	3.97201	4.10851	4.24501	0.030904	0.0247713	0.143385	0.12011
chr2	241101880	241101959	1347145	0	-	0.506329	(0.476,0.515]	chr2	141353	3	SS5_PROX	SS5_PROX:INTRON	MTERF4	ENSG00000122085.17	ENST00000464344.6:ENST00000241527.10:ENST00000614476.4:ENST00000455202.6:ENST00000480298.5:ENST00000476564.5:ENST00000495694.5:ENST00000493169.1:ENST00000401626.6:ENST00000391980.7:ENST00000406593.1:ENST00000439144.5:ENST00000460915.1:ENST00000407095.3:ENST00000475860.1:ENST00000434791.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	23	2	3.97201	4.10851	4.24501	0.030904	0.0247713	0.143385	0.12011
chr4	1973766	1973865	1911632	0	+	0.494949	(0.476,0.515]	chr4	191852	123	INTRON	INTRON	NSD2	ENSG00000109685.19	ENST00000508803.6:ENST00000382891.9:ENST00000353275.9:ENST00000382892.6:ENST00000382895.7:ENST00000312087.10:ENST00000677559.1:ENST00000482415.6:ENST00000382888.3:ENST00000679039.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	23	2	3.97201	4.10851	4.24501	0.030904	0.0247713	0.143385	0.12011
chr4	53062146	53062246	2142298	0	-	0.5	(0.476,0.515]	chr4	211159	1409	INTRON	INTRON	SCFD2	ENSG00000184178.17	ENST00000401642.8:ENST00000388940.8	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	3.97201	4.10851	4.24501	0.030904	0.0247713	0.143385	0.12011
chr6	31625080	31625170	2843138	0	+	0.511111	(0.476,0.515]	chr6	267594	3	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	PRRC2A	ENSG00000204469.13	ENST00000376033.3:ENST00000376007.8:ENST00000469577.5:ENST00000464079.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	23	2	3.97201	4.10851	4.24501	0.030904	0.0247713	0.143385	0.12011
chr6	37839405	37839505	2857229	0	+	0.48	(0.476,0.515]	chr6	270225	190	INTRON	INTRON	ZFAND3	ENSG00000156639.12	ENST00000287218.9:ENST00000373391.6:ENST00000474522.5	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	3.97201	4.10851	4.24501	0.030904	0.0247713	0.143385	0.12011
chr6	140607998	140608098	2972538	0	+	0.49	(0.476,0.515]	chr6	279031	420	INTRON	INTRON	ENSG00000288714	ENSG00000288714.1	ENST00000684511.1	lncRNA	lncRNA	lncRNA	lncRNA	0	23	2	3.97201	4.10851	4.24501	0.030904	0.0247713	0.143385	0.12011
chr6	158469395	158469495	3020924	0	+	0.51	(0.476,0.515]	chr6	281733	73	INTRON	INTRON	TULP4	ENSG00000130338.13	ENST00000367097.8:ENST00000367094.6:ENST00000616856.1:ENST00000613390.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	23	2	3.97201	4.10851	4.24501	0.030904	0.0247713	0.143385	0.12011
chr7	73510040	73510137	3554977	0	-	0.494845	(0.476,0.515]	chr7	330807	12	INTRON	INTRON	BAZ1B	ENSG00000009954.11	ENST00000339594.9:ENST00000404251.1	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	3.97201	4.10851	4.24501	0.030904	0.0247713	0.143385	0.12011
chr7	99009557	99009657	3360646	0	+	0.48	(0.476,0.515]	chr7	313732	6	INTRON	INTRON	TRRAP	ENSG00000196367.14	ENST00000355540.7:ENST00000359863.8:ENST00000628380.2:ENST00000456197.2:ENST00000446306.7:ENST00000360902.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	23	2	3.97201	4.10851	4.24501	0.030904	0.0247713	0.143385	0.12011
chr9	34008434	34008534	4245440	0	-	0.51	(0.476,0.515]	chr9	390473	92	INTRON	INTRON	UBAP2	ENSG00000137073.24	ENST00000379238.7:ENST00000683659.1:ENST00000682239.1:ENST00000683140.1:ENST00000682209.1:ENST00000681980.1:ENST00000360802.6:ENST00000683252.1:ENST00000684158.1:ENST00000682914.1:ENST00000683717.1:ENST00000379239.9:ENST00000683084.1:ENST00000684754.1:ENST00000629575.2:ENST00000684298.1:ENST00000412543.6:ENST00000480885.5:ENST00000459988.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	23	2	3.97201	4.10851	4.24501	0.030904	0.0247713	0.143385	0.12011
chr9	93064015	93064114	4157628	0	+	0.484848	(0.476,0.515]	chr9	379050	48	INTRON	INTRON	SUSD3	ENSG00000157303.11	ENST00000617293.4:ENST00000375472.8:ENST00000465709.5	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	3.97201	4.10851	4.24501	0.030904	0.0247713	0.143385	0.12011
chr19	49928474	49928572	7202035	0	-	0.479592	(0.476,0.515]	chr19	730677	9	UTR5	UTR5:EXON_MRNA:INTRON	NUP62	ENSG00000213024.12	ENST00000422090.2:ENST00000352066.8:ENST00000597723.5:ENST00000597029.5:ENST00000596217.1:ENST00000595463.5:ENST00000593652.5:ENST00000599567.5:ENST00000596437.5:ENST00000600583.5:ENST00000594673.5:ENST00000599788.1:ENST00000600935.1:ENST00000596680.5:ENST00000601665.5:ENST00000599560.5:ENST00000599186.5:ENST00000597814.1:ENST00000599830.1:ENST00000598301.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	339	2	3.39624	4.108465	4.82069	1.01552e-6	5.77841e-9	6.25342e-4	2.53353e-5
chr8	26330201	26330300	3716484	0	+	0.242424	[0,0.28]	chr8	345376	44	INTRON	INTRON	PPP2R2A	ENSG00000221914.11	ENST00000380737.8:ENST00000520329.5:ENST00000518254.5:ENST00000524169.5:ENST00000518397.5:ENST00000522535.5:ENST00000665949.1:ENST00000522150.5:ENST00000523473.5:ENST00000521095.5:ENST00000660435.1:ENST00000523925.5:ENST00000524099.5:ENST00000315985.7:ENST00000519636.5:ENST00000522482.5:ENST00000521557.5:ENST00000519439.5:ENST00000521484.5:ENST00000523964.5:ENST00000667651.1:ENST00000657943.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	65	2	2.73384	4.108454999999999	5.48307	0.0246308	9.62922e-4	0.12011	0.0285195
chr21	22396993	22397093	7386338	0	+	0.46	(0.44,0.476]	chr21	752727	1838	INTRON	INTRON	ENSG00000226043	ENSG00000226043.2	ENST00000667099.1:ENST00000654607.1:ENST00000444130.1	lncRNA	lncRNA	lncRNA	lncRNA	2	64	2	2.86452	4.108395	5.35227	0.00159222	8.47974e-4	0.0367961	0.0267232
chr1	150448099	150448199	222543	0	+	0.33	(0.32,0.35]	chr1	25092	13	INTRON	INTRON	RPRD2	ENSG00000163125.16	ENST00000492220.1:ENST00000369068.5:ENST00000401000.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	24	2	3.94529	4.10821	4.27113	0.0693433	0.0199982	0.184298	0.120668
chr1	180752571	180752671	270802	0	+	0.34	(0.32,0.35]	chr1	31620	698	INTRON	INTRON	XPR1	ENSG00000143324.14	ENST00000367590.9:ENST00000367589.3	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	3.94529	4.10821	4.27113	0.0693433	0.0199982	0.184298	0.120668
chr1	236566445	236566545	665354	0	-	0.34	(0.32,0.35]	chr1	78823	4	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HEATR1	ENSG00000119285.11	ENST00000366582.8:ENST00000366581.6	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	3.94529	4.10821	4.27113	0.0693433	0.0199982	0.184298	0.120668
chr11	61426642	61426739	4957028	0	-	0.329897	(0.32,0.35]	chr11	465888	3	EXON_MRNA	EXON_MRNA:INTRON	CPSF7:ENSG00000279632	ENSG00000149532.16:ENSG00000279632.1	ENST00000340437.8:ENST00000394888.8:ENST00000439958.8:ENST00000448745.5:ENST00000537641.5:ENST00000477890.6:ENST00000544669.5:ENST00000539952.5:ENST00000535222.5:ENST00000544990.5:ENST00000544585.5:ENST00000413232.5:ENST00000537162.5:ENST00000543545.5:ENST00000541963.5:ENST00000536548.5:ENST00000450000.5:ENST00000449811.5:ENST00000413184.6:ENST00000536145.3:ENST00000545934.5:ENST00000463244.6:ENST00000626926.1:ENST00000489728.1:ENST00000474684.1:ENST00000623917.1	protein_coding	protein_coding	protein_coding:TEC	protein_coding:retained_intron:nonsense_mediated_decay:TEC:processed_transcript	0	24	2	3.94529	4.10821	4.27113	0.0693433	0.0199982	0.184298	0.120668
chr12	91594932	91595032	5385166	0	-	0.33	(0.32,0.35]	chr12	513485	877	INTRON	INTRON	ENSG00000289605	ENSG00000289605.1	ENST00000685093.1	lncRNA	lncRNA	lncRNA	lncRNA	0	24	2	3.94529	4.10821	4.27113	0.0693433	0.0199982	0.184298	0.120668
chr12	123295107	123295207	5444478	0	-	0.34	(0.32,0.35]	chr12	520952	61	UTR3	UTR3:EXON_MRNA	SBNO1	ENSG00000139697.14	ENST00000602398.3:ENST00000267176.8:ENST00000420886.6	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	3.94529	4.10821	4.27113	0.0693433	0.0199982	0.184298	0.120668
chr13	50092642	50092742	5594701	0	-	0.33	(0.32,0.35]	chr13	534727	107	INTRON	INTRON	DLEU2	ENSG00000231607.14	ENST00000621282.4:ENST00000425586.5:ENST00000662092.1:ENST00000666359.2	lncRNA	lncRNA	lncRNA	lncRNA	0	24	2	3.94529	4.10821	4.27113	0.0693433	0.0199982	0.184298	0.120668
chr14	63503029	63503129	5907501	0	-	0.35	(0.32,0.35]	chr14	561132	488	INTRON	INTRON	PPP2R5E	ENSG00000154001.14	ENST00000337537.8:ENST00000422769.6:ENST00000555899.1:ENST00000556484.5:ENST00000553266.5:ENST00000556878.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	24	2	3.94529	4.10821	4.27113	0.0693433	0.0199982	0.184298	0.120668
chr17	17222000	17222064	6735910	0	-	0.34375	(0.32,0.35]	chr17	660897	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	FLCN	ENSG00000154803.13	ENST00000285071.9:ENST00000466317.1:ENST00000389169.9:ENST00000480316.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	24	2	3.94529	4.10821	4.27113	0.0693433	0.0199982	0.184298	0.120668
chr17	20131584	20131684	6573017	0	+	0.34	(0.32,0.35]	chr17	639097	62	INTRON	INTRON	SPECC1	ENSG00000128487.19	ENST00000677148.1:ENST00000679048.1:ENST00000678019.1:ENST00000678315.1:ENST00000678321.1:ENST00000676570.1:ENST00000678651.1:ENST00000679049.1:ENST00000472876.5:ENST00000467722.3:ENST00000583528.6:ENST00000680019.1:ENST00000395527.9:ENST00000681593.1:ENST00000680830.1:ENST00000680124.1:ENST00000583482.7:ENST00000679255.1:ENST00000681202.1:ENST00000677914.1:ENST00000578321.2:ENST00000680374.1:ENST00000583463.6:ENST00000681564.1:ENST00000681116.1:ENST00000681875.1:ENST00000680604.1:ENST00000680572.1:ENST00000679058.1:ENST00000395529.7:ENST00000261503.9:ENST00000581973.7:ENST00000580934.2:ENST00000680740.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	24	2	3.94529	4.10821	4.27113	0.0693433	0.0199982	0.184298	0.120668
chr18	62114360	62114460	6983404	0	-	0.34	(0.32,0.35]	chr18	690964	4	SS5_PROX	SS5_PROX:INTRON	PIGN	ENSG00000197563.11	ENST00000639600.1:ENST00000640252.2:ENST00000639912.1:ENST00000640876.1:ENST00000357637.10:ENST00000640145.1:ENST00000638977.1:ENST00000640170.1:ENST00000638167.1:ENST00000640540.1:ENST00000639342.1:ENST00000638435.1:ENST00000639681.1:ENST00000400334.7:ENST00000638936.1:ENST00000639758.1:ENST00000639902.1:ENST00000638858.1:ENST00000638369.1:ENST00000640593.1:ENST00000640268.1:ENST00000640682.1:ENST00000638904.1:ENST00000638424.1:ENST00000640050.1:ENST00000638183.1:ENST00000639174.1:ENST00000639214.1:ENST00000638329.1:ENST00000589339.6:ENST00000588571.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	24	2	3.94529	4.10821	4.27113	0.0693433	0.0199982	0.184298	0.120668
chr19	21036318	21036415	7039272	0	+	0.329897	(0.32,0.35]	chr19	701854	23	UTR3	UTR3:EXON_MRNA:INTRON	ZNF430	ENSG00000118620.13	ENST00000599548.5:ENST00000594110.5:ENST00000261560.10:ENST00000595401.1	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	3.94529	4.10821	4.27113	0.0693433	0.0199982	0.184298	0.120668
chr3	60453814	60453914	1714152	0	-	0.35	(0.32,0.35]	chr3	176138	3731	INTRON	INTRON	FHIT	ENSG00000189283.10	ENST00000492590.6:ENST00000476844.5:ENST00000468189.5:ENST00000488467.5	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	3.94529	4.10821	4.27113	0.0693433	0.0199982	0.184298	0.120668
chr4	51894621	51894720	1959081	0	+	0.323232	(0.32,0.35]	chr4	196342	24	INTRON	INTRON	DCUN1D4	ENSG00000109184.15	ENST00000509376.5:ENST00000381441.7:ENST00000334635.10:ENST00000507741.5:ENST00000477560.5:ENST00000451288.6:ENST00000510587.5:ENST00000507659.5:ENST00000505634.5:ENST00000510808.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	24	2	3.94529	4.10821	4.27113	0.0693433	0.0199982	0.184298	0.120668
chr6	160029249	160029349	3023574	0	+	0.35	(0.32,0.35]	chr6	282044	3	SS3_PROX	SS3_PROX:INTRON	IGF2R	ENSG00000197081.16	ENST00000676781.1:ENST00000677704.1:ENST00000356956.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	24	2	3.94529	4.10821	4.27113	0.0693433	0.0199982	0.184298	0.120668
chr7	10589564	10589664	3482675	0	-	0.34	(0.32,0.35]	chr7	325772	276	INTRON	INTRON	MGC4859	ENSG00000283117.1	ENST00000634803.1	lncRNA	lncRNA	lncRNA	lncRNA	0	24	2	3.94529	4.10821	4.27113	0.0693433	0.0199982	0.184298	0.120668
chr7	128000166	128000266	3405907	0	+	0.35	(0.32,0.35]	chr7	318188	22	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000486037.1:ENST00000484767.5:ENST00000470723.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	24	2	3.94529	4.10821	4.27113	0.0693433	0.0199982	0.184298	0.120668
chr8	51845863	51845963	3946057	0	-	0.33	(0.32,0.35]	chr8	362020	1	SS3_PROX	SS3_PROX:INTRON	PCMTD1	ENSG00000168300.14	ENST00000544451.2:ENST00000360540.9:ENST00000522514.6:ENST00000519559.1:ENST00000519975.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	24	2	3.94529	4.10821	4.27113	0.0693433	0.0199982	0.184298	0.120668
chr16	12031231	12031330	6291865	0	+	0.50505	(0.476,0.515]	chr16	602377	11	INTRON	INTRON	SNX29	ENSG00000048471.14	ENST00000566228.6:ENST00000569801.5:ENST00000564111.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	49	2	3.44784	4.108055	4.76827	0.00600704	0.00113238	0.0674604	0.0308465
chr5	109338548	109338646	2701647	0	-	0.520408	(0.515,0.57]	chr5	254312	8	INTRON	INTRON	PJA2	ENSG00000198961.10	ENST00000361557.4:ENST00000361189.7	protein_coding	protein_coding	protein_coding	protein_coding	5	193	2	4.08438	4.107945	4.13151	1.69786e-6	5.54135e-8	8.74102e-4	1.01158e-4
chr2	199455568	199455668	1309228	0	-	0.45	(0.44,0.476]	chr2	136893	3	SS5_PROX	SS5_PROX:INTRON	SATB2	ENSG00000119042.17	ENST00000614512.4:ENST00000417098.6:ENST00000260926.9:ENST00000443023.5:ENST00000428695.5:ENST00000457245.5:ENST00000440919.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	65	2	2.44514	4.107875	5.77061	0.0087381	1.44264e-4	0.0845538	0.0109794
chr1	45642326	45642426	440136	0	-	0.34	(0.32,0.35]	chr1	53331	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	GPBP1L1	ENSG00000159592.11	ENST00000290795.7:ENST00000355105.8:ENST00000498128.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	24	2	4.04364	4.107725	4.17181	0.04531	0.034181	0.149888	0.146815
chr12	57831092	57831191	5339998	0	-	0.333333	(0.32,0.35]	chr12	511016	11	INTRON	INTRON	CTDSP2	ENSG00000175215.11	ENST00000398073.7:ENST00000548823.1:ENST00000547701.5:ENST00000551594.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	24	2	4.04364	4.107725	4.17181	0.04531	0.034181	0.149888	0.146815
chr12	64651315	64651414	5155406	0	+	0.333333	(0.32,0.35]	chr12	488093	398	INTRON	INTRON	RASSF3	ENSG00000153179.13	ENST00000637125.1:ENST00000542104.6:ENST00000283172.8:ENST00000336061.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	24	2	4.04364	4.107725	4.17181	0.04531	0.034181	0.149888	0.146815
chr15	42902527	42902627	6158822	0	-	0.33	(0.32,0.35]	chr15	586300	235	INTRON	INTRON	TTBK2	ENSG00000128881.18	ENST00000267890.11:ENST00000567840.5:ENST00000567274.5:ENST00000564431.5:ENST00000562880.5:ENST00000566931.1:ENST00000567485.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	24	2	4.04364	4.107725	4.17181	0.04531	0.034181	0.149888	0.146815
chr19	1972519	1972617	6996067	0	+	0.346939	(0.32,0.35]	chr19	693383	22	INTRON	INTRON	CSNK1G2	ENSG00000133275.16	ENST00000255641.13:ENST00000591752.5:ENST00000589350.2:ENST00000589385.5	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	4.04364	4.107725	4.17181	0.04531	0.034181	0.149888	0.146815
chr20	50612103	50612203	7354642	0	-	0.35	(0.32,0.35]	chr20	750043	5	INTRON	INTRON	RIPOR3	ENSG00000042062.13	ENST00000327979.8:ENST00000045083.6:ENST00000462493.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	24	2	4.04364	4.107725	4.17181	0.04531	0.034181	0.149888	0.146815
chr3	48173189	48173288	1687673	0	-	0.333333	(0.32,0.35]	chr3	172314	49	INTRON	INTRON	CDC25A	ENSG00000164045.12	ENST00000302506.8:ENST00000351231.7:ENST00000459900.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	24	2	4.04364	4.107725	4.17181	0.04531	0.034181	0.149888	0.146815
chr3	75733112	75733211	1747853	0	-	0.323232	(0.32,0.35]	chr3	177531	6	INTRON	INTRON	ZNF717	ENSG00000227124.11	ENST00000648506.1:ENST00000491507.1:ENST00000477374.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	24	2	4.04364	4.107725	4.17181	0.04531	0.034181	0.149888	0.146815
chr4	73190016	73190116	2160138	0	-	0.34	(0.32,0.35]	chr4	212794	121	INTRON	INTRON	ANKRD17	ENSG00000132466.20	ENST00000358602.9:ENST00000558247.5:ENST00000330838.10:ENST00000509867.6:ENST00000561029.1:ENST00000559367.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	24	2	4.04364	4.107725	4.17181	0.04531	0.034181	0.149888	0.146815
chr4	109721048	109721147	2225366	0	-	0.343434	(0.32,0.35]	chr4	217900	19	INTRON	INTRON	PLA2G12A	ENSG00000123739.11	ENST00000243501.10:ENST00000502283.1:ENST00000507961.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	24	2	4.04364	4.107725	4.17181	0.04531	0.034181	0.149888	0.146815
chr6	17931732	17931831	3067993	0	-	0.333333	(0.32,0.35]	chr6	285100	332	INTRON	INTRON	KIF13A	ENSG00000137177.20	ENST00000378814.9:ENST00000259711.11:ENST00000378826.6:ENST00000378843.6:ENST00000636847.1:ENST00000507576.1:ENST00000505588.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	24	2	4.04364	4.107725	4.17181	0.04531	0.034181	0.149888	0.146815
chr6	119214477	119214577	3204460	0	-	0.34	(0.32,0.35]	chr6	298302	92	INTRON	INTRON	MAN1A1	ENSG00000111885.7	ENST00000368468.4	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	4.04364	4.107725	4.17181	0.04531	0.034181	0.149888	0.146815
chr6	140426581	140426681	2970722	0	+	0.33	(0.32,0.35]	chr6	279019	1111	INTRON	INTRON	ENSG00000288714	ENSG00000288714.1	ENST00000684511.1	lncRNA	lncRNA	lncRNA	lncRNA	0	24	2	4.04364	4.107725	4.17181	0.04531	0.034181	0.149888	0.146815
chr7	5212011	5212110	3272180	0	+	0.343434	(0.32,0.35]	chr7	304097	120	INTRON	INTRON	WIPI2	ENSG00000157954.15	ENST00000401525.7:ENST00000288828.9:ENST00000404704.7:ENST00000466014.5:ENST00000485854.5:ENST00000382384.6:ENST00000496867.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	24	2	4.04364	4.107725	4.17181	0.04531	0.034181	0.149888	0.146815
chr7	75703573	75703673	3560897	0	-	0.33	(0.32,0.35]	chr7	331784	485	INTRON	INTRON	HIP1	ENSG00000127946.17	ENST00000336926.11:ENST00000434438.6:ENST00000485723.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	24	2	4.04364	4.107725	4.17181	0.04531	0.034181	0.149888	0.146815
chr7	136155064	136155164	3431804	0	+	0.34	(0.32,0.35]	chr7	319911	375	INTRON	INTRON	ENSG00000232053	ENSG00000232053.7	ENST00000657456.1:ENST00000668062.1:ENST00000668668.1:ENST00000445293.6:ENST00000659747.1:ENST00000668896.1:ENST00000435996.1	lncRNA	lncRNA	lncRNA	lncRNA	0	24	2	4.04364	4.107725	4.17181	0.04531	0.034181	0.149888	0.146815
chr7	156670986	156671086	3685766	0	-	0.33	(0.32,0.35]	chr7	341967	13	INTRON	INTRON	LMBR1	ENSG00000105983.23	ENST00000430825.3	protein_coding	processed_transcript	protein_coding	processed_transcript	0	24	2	4.04364	4.107725	4.17181	0.04531	0.034181	0.149888	0.146815
chr9	100044528	100044628	4308099	0	-	0.33	(0.32,0.35]	chr9	395794	178	INTRON	INTRON	ERP44	ENSG00000023318.9	ENST00000262455.7:ENST00000685319.1:ENST00000691188.1:ENST00000687025.1:ENST00000687093.1:ENST00000690739.1:ENST00000687017.1:ENST00000690317.1:ENST00000691823.1:ENST00000686275.1:ENST00000689406.1:ENST00000684842.1:ENST00000688230.1:ENST00000685432.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	24	2	4.04364	4.107725	4.17181	0.04531	0.034181	0.149888	0.146815
chrX	372231	372331	7742046	0	-	0.35	(0.32,0.35]	chrX	792796	95	INTRON	INTRON	PPP2R3B	ENSG00000167393.18	ENST00000390665.9:ENST00000445792.7:ENST00000381625.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	24	2	4.04364	4.107725	4.17181	0.04531	0.034181	0.149888	0.146815
chrX	3900768	3900862	7747601	0	-	0.340426	(0.32,0.35]	chrX	793144	10	INTRON	INTRON	ENSG00000285756	ENSG00000285756.2	ENST00000648217.1:ENST00000650456.1:ENST00000650538.1:ENST00000424415.2:ENST00000451781.1	lncRNA	lncRNA	lncRNA	lncRNA	0	24	2	4.04364	4.107725	4.17181	0.04531	0.034181	0.149888	0.146815
chr22	19082684	19082784	7551616	0	-	0.48	(0.476,0.515]	chr22	771897	141	INTRON	INTRON	DGCR2	ENSG00000070413.20	ENST00000537045.5:ENST00000545799.5:ENST00000263196.12:ENST00000389262.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	89	2	2.86926	4.107575	5.34589	5.40463e-4	3.224e-4	0.0215026	0.0159645
chr7	75067390	75067488	3557185	0	-	0.5	(0.476,0.515]	chr7	331254	2	INTRON	INTRON	RCC1L	ENSG00000274523.5	ENST00000614461.4:ENST00000610322.5:ENST00000616051.1:ENST00000618035.4:ENST00000615250.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	49	2	2.80729	4.10749	5.40769	0.0126008	6.23078e-4	0.0980703	0.0229151
chr17	15518152	15518252	6732010	0	-	0.37	(0.35,0.378]	chr17	660302	11	INTRON	INTRON	TVP23C-CDRT4:TVP23C	ENSG00000259024.6:ENSG00000175106.17	ENST00000522212.6:ENST00000557349.5:ENST00000481756.7:ENST00000518506.4:ENST00000225576.7:ENST00000581273.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	153	2	3.50993	4.10744	4.70495	1.22305e-4	1.29513e-6	0.00993581	6.69458e-4
chr6	157012800	157012900	3009521	0	+	0.34	(0.32,0.35]	chr6	281130	273	INTRON	INTRON	ARID1B	ENSG00000049618.24	ENST00000346085.10:ENST00000636930.2:ENST00000647938.1:ENST00000350026.10:ENST00000674298.1:ENST00000674190.1:ENST00000414678.7:ENST00000319584.11:ENST00000452544.2:ENST00000637887.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	57	2	2.68921	4.107415	5.52562	0.0230336	2.76065e-4	0.118056	0.0147997
chr21	39195598	39195692	7464316	0	-	0.297872	(0.28,0.32]	chr21	760358	10	UTR3	UTR3:EXON_MRNA:INTRON	BRWD1	ENSG00000185658.14	ENST00000333229.6:ENST00000342449.8:ENST00000446924.5:ENST00000380800.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	90	2	2.1076	4.107095	6.10659	0.0133585	1.73268e-4	0.100772	0.0120833
chr6	4816400	4816500	2791262	0	+	0.27	[0,0.28]	chr6	263598	392	INTRON	INTRON	CDYL	ENSG00000153046.18	ENST00000328908.9:ENST00000491864.1:ENST00000440139.5:ENST00000483019.1:ENST00000397588.8:ENST00000472453.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	65	2	2.81922	4.107085	5.39495	0.0197411	0.00133175	0.109608	0.0335129
chr7	135495180	135495280	3648812	0	-	0.53	(0.515,0.57]	chr7	339187	564	INTRON	INTRON	CNOT4	ENSG00000080802.20	ENST00000541284.6:ENST00000451834.5:ENST00000423368.6:ENST00000361528.8:ENST00000428680.6:ENST00000315544.6:ENST00000491203.5:ENST00000498534.5:ENST00000465721.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	45	2	3.53085	4.106975	4.6831	0.00471288	6.59951e-4	0.0600108	0.0232396
chr1	63410352	63410450	132902	0	+	0.469388	(0.44,0.476]	chr1	15075	29	INTRON	INTRON	ALG6	ENSG00000088035.18	ENST00000647818.1:ENST00000603108.6:ENST00000648964.1:ENST00000263440.6:ENST00000650494.1:ENST00000649570.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	23	2	3.97626	4.106904999999999	4.23755	0.0300538	0.0263357	0.142135	0.122221
chr1	149989665	149989765	550193	0	-	0.46	(0.44,0.476]	chr1	64628	117	INTRON	INTRON	OTUD7B	ENSG00000264522.6	ENST00000581312.6:ENST00000417191.2	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	3.97626	4.106904999999999	4.23755	0.0300538	0.0263357	0.142135	0.122221
chr1	226155333	226155431	646740	0	-	0.459184	(0.44,0.476]	chr1	76643	1	INTRON	INTRON	ACBD3	ENSG00000182827.9	ENST00000366812.6:ENST00000464927.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	23	2	3.97626	4.106904999999999	4.23755	0.0300538	0.0263357	0.142135	0.122221
chr12	93711863	93711963	5190244	0	+	0.47	(0.44,0.476]	chr12	490910	324	INTRON	INTRON	CRADD	ENSG00000169372.13	ENST00000332896.8:ENST00000549615.5:ENST00000552983.5:ENST00000552033.5:ENST00000551065.5:ENST00000548483.5:ENST00000542893.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	23	2	3.97626	4.106904999999999	4.23755	0.0300538	0.0263357	0.142135	0.122221
chr12	121908163	121908262	5238378	0	+	0.454545	(0.44,0.476]	chr12	497289	47	INTRON	INTRON	PSMD9	ENSG00000110801.14	ENST00000537407.5:ENST00000540962.5:ENST00000261817.6:ENST00000542602.1:ENST00000541212.6:ENST00000543699.5:ENST00000535293.5:ENST00000544724.5:ENST00000544254.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	23	2	3.97626	4.106904999999999	4.23755	0.0300538	0.0263357	0.142135	0.122221
chr14	37049389	37049489	5876781	0	-	0.47	(0.44,0.476]	chr14	558013	1740	INTRON	INTRON	SLC25A21	ENSG00000183032.12	ENST00000331299.6:ENST00000555449.5:ENST00000557611.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	23	2	3.97626	4.106904999999999	4.23755	0.0300538	0.0263357	0.142135	0.122221
chr14	63942443	63942543	5747669	0	+	0.46	(0.44,0.476]	chr14	545469	3	SS5_PROX	SS5_PROX:INTRON	SYNE2	ENSG00000054654.20	ENST00000674003.1:ENST00000344113.8:ENST00000358025.7:ENST00000341472.9:ENST00000555002.6:ENST00000674144.1:ENST00000554584.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	23	2	3.97626	4.106904999999999	4.23755	0.0300538	0.0263357	0.142135	0.122221
chr15	41472638	41472737	6005927	0	+	0.444444	(0.44,0.476]	chr15	571425	9	INTRON	INTRON	RTF1	ENSG00000137815.15	ENST00000389629.9	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	3.97626	4.106904999999999	4.23755	0.0300538	0.0263357	0.142135	0.122221
chr16	15367455	15367552	6451048	0	-	0.474227	(0.44,0.476]	chr16	621725	3	INTRON	INTRON	NPIPA5	ENSG00000183793.14	ENST00000360151.9:ENST00000543801.5:ENST00000534094.1	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	3.97626	4.106904999999999	4.23755	0.0300538	0.0263357	0.142135	0.122221
chr16	85380839	85380939	6413638	0	+	0.47	(0.44,0.476]	chr16	615465	215	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	3.97626	4.106904999999999	4.23755	0.0300538	0.0263357	0.142135	0.122221
chr17	20071948	20072047	6572414	0	+	0.464646	(0.44,0.476]	chr17	639067	42	INTRON	INTRON	SPECC1	ENSG00000128487.19	ENST00000677148.1:ENST00000679048.1:ENST00000678019.1:ENST00000678315.1:ENST00000678321.1:ENST00000676570.1:ENST00000678651.1:ENST00000679049.1:ENST00000472876.5:ENST00000467722.3:ENST00000583528.6:ENST00000680019.1:ENST00000395527.9:ENST00000681593.1:ENST00000680830.1:ENST00000680124.1:ENST00000583482.7:ENST00000679255.1:ENST00000681202.1:ENST00000677914.1:ENST00000578321.2:ENST00000680374.1:ENST00000583463.6:ENST00000681564.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	23	2	3.97626	4.106904999999999	4.23755	0.0300538	0.0263357	0.142135	0.122221
chr19	888454	888552	7110705	0	-	0.44898	(0.44,0.476]	chr19	714112	19	INTRON	INTRON	MED16	ENSG00000175221.16	ENST00000395808.7:ENST00000312090.10:ENST00000325464.6:ENST00000606248.5:ENST00000586017.5:ENST00000592943.5:ENST00000606828.2:ENST00000592373.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	23	2	3.97626	4.106904999999999	4.23755	0.0300538	0.0263357	0.142135	0.122221
chr19	19295788	19295888	7154446	0	-	0.46	(0.44,0.476]	chr19	723229	144	INTRON	INTRON	SUGP1	ENSG00000105705.16	ENST00000589144.5:ENST00000247001.10:ENST00000588731.6:ENST00000591007.6:ENST00000587119.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	23	2	3.97626	4.106904999999999	4.23755	0.0300538	0.0263357	0.142135	0.122221
chr2	127749344	127749444	1225256	0	-	0.47	(0.44,0.476]	chr2	130486	109	INTRON	INTRON	WDR33	ENSG00000136709.12	ENST00000322313.9:ENST00000436787.5:ENST00000393006.5	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	3.97626	4.106904999999999	4.23755	0.0300538	0.0263357	0.142135	0.122221
chr20	35658529	35658629	7335718	0	-	0.47	(0.44,0.476]	chr20	747297	2	SS5_PROX	SS5_PROX:INTRON	CPNE1:RBM12	ENSG00000214078.13:ENSG00000244462.8	ENST00000352393.8:ENST00000397443.7:ENST00000483359.5:ENST00000397442.5:ENST00000401607.6:ENST00000437340.5:ENST00000430570.5:ENST00000412056.5:ENST00000414664.5:ENST00000416778.5:ENST00000439806.6:ENST00000439669.5:ENST00000420363.5:ENST00000434795.5:ENST00000440240.5:ENST00000458038.5:ENST00000437100.5:ENST00000414711.5:ENST00000435747.2:ENST00000374114.8:ENST00000359646.1:ENST00000374104.7:ENST00000424458.5:ENST00000431148.1:ENST00000435161.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	23	2	3.97626	4.106904999999999	4.23755	0.0300538	0.0263357	0.142135	0.122221
chr22	31576588	31576687	7504808	0	+	0.454545	(0.44,0.476]	chr22	765723	8	INTRON	INTRON	SFI1	ENSG00000198089.16	ENST00000540643.5:ENST00000432498.5:ENST00000443011.5:ENST00000400288.7:ENST00000400289.5:ENST00000382162.7:ENST00000524296.5:ENST00000476010.5:ENST00000484806.1:ENST00000452250.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	23	2	3.97626	4.106904999999999	4.23755	0.0300538	0.0263357	0.142135	0.122221
chr5	6747586	6747680	2316186	0	+	0.446809	(0.44,0.476]	chr5	224304	8	INTRON	INTRON	TENT4A	ENSG00000112941.14	ENST00000230859.8:ENST00000631941.2:ENST00000511764.5:ENST00000514697.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	23	2	3.97626	4.106904999999999	4.23755	0.0300538	0.0263357	0.142135	0.122221
chr5	137967566	137967666	2730137	0	-	0.45	(0.44,0.476]	chr5	256955	47	INTRON	INTRON	FAM13B	ENSG00000031003.11	ENST00000689681.1:ENST00000033079.7:ENST00000425075.6:ENST00000420893.6	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	3.97626	4.106904999999999	4.23755	0.0300538	0.0263357	0.142135	0.122221
chrX	139152315	139152415	7903089	0	-	0.45	(0.44,0.476]	chrX	804252	1613	INTRON	INTRON	FGF13	ENSG00000129682.16	ENST00000441825.8:ENST00000626909.2:ENST00000436198.5:ENST00000448673.1:ENST00000421460.1	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	3.97626	4.106904999999999	4.23755	0.0300538	0.0263357	0.142135	0.122221
chr7	53785459	53785559	3534004	0	-	0.3	(0.28,0.32]	chr7	329607	42	INTRON	INTRON	LINC01446	ENSG00000205628.5	ENST00000380970.2:ENST00000663138.2:ENST00000660945.1:ENST00000662931.1:ENST00000661502.1:ENST00000670945.1:ENST00000666213.1:ENST00000663312.1:ENST00000660413.1:ENST00000652440.1:ENST00000665927.1:ENST00000659794.1:ENST00000670507.1:ENST00000659481.1:ENST00000659250.1:ENST00000662259.1:ENST00000669638.1:ENST00000650830.1:ENST00000668489.1:ENST00000652104.1:ENST00000656718.1:ENST00000663872.1:ENST00000660958.1:ENST00000656885.1:ENST00000654050.1:ENST00000651858.1:ENST00000651506.1:ENST00000658338.1:ENST00000651951.1	lncRNA	lncRNA	lncRNA	lncRNA	1	60	2	2.67975	4.106885	5.53402	0.0252505	4.0843e-4	0.12011	0.0181306
chr14	96513871	96513971	5810282	0	+	0.33	(0.32,0.35]	chr14	550883	88	INTRON	INTRON	PAPOLA	ENSG00000090060.19	ENST00000554887.5:ENST00000618976.2:ENST00000216277.13:ENST00000553357.5:ENST00000553689.5:ENST00000557320.5:ENST00000554130.5:ENST00000557471.5:ENST00000556619.5:ENST00000392990.6:ENST00000555626.5:ENST00000556248.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	58	2	3.75694	4.106615	4.45629	0.0246089	3.37248e-4	0.12011	0.0163178
chr11	73876119	73876154	4985835	0	-	0.171429	[0,0.28]	chr11	470913	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	COA4	ENSG00000181924.7	ENST00000355693.5:ENST00000545127.1:ENST00000537289.1:ENST00000544575.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	104	2	1.71402	4.10652	6.49902	0.047753	8.78851e-5	0.170327	0.00842539
chr11	28114302	28114401	4752213	0	+	0.313131	(0.28,0.32]	chr11	440072	3	INTRON	INTRON	METTL15	ENSG00000169519.21	ENST00000406787.7:ENST00000403099.5:ENST00000451385.6:ENST00000407364.8:ENST00000532947.2:ENST00000634627.1:ENST00000634973.1:ENST00000303459.10:ENST00000634721.1:ENST00000634762.1:ENST00000437814.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	98	2	2.17756	4.106235	6.03491	0.0130851	4.10265e-5	0.0934394	0.00519615
chr10	101812929	101813029	4680921	0	-	0.2	[0,0.28]	chr10	432014	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	OGA	ENSG00000198408.14	ENST00000439817.5:ENST00000361464.8:ENST00000357797.9:ENST00000370094.7:ENST00000429860.1	protein_coding	protein_coding	protein_coding	protein_coding	6	136	2	2.07145	4.106225	6.141	0.00429665	3.6661e-4	0.0599409	0.0177832
chr21	21230243	21230343	7381312	0	+	0.23	[0,0.28]	chr21	752602	2313	INTRON	INTRON	NCAM2	ENSG00000154654.15	ENST00000400546.6	protein_coding	protein_coding	protein_coding	protein_coding	1	59	2	3.05114	4.10622	5.1613	0.00866441	0.0075493	0.0787025	0.0773151
chr1	120572071	120572171	535457	0	-	0.39	(0.378,0.408]	chr1	63018	214	INTRON	INTRON	PDE4DIPP2	ENSG00000275131.3	ENST00000612480.2	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	3	78	2	2.42827	4.106	5.78373	0.00336942	1.89312e-4	0.0532965	0.012565
chr1	8366573	8366673	369246	0	-	0.56	(0.515,0.57]	chr1	43438	2	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000377464.5:ENST00000400907.6:ENST00000476556.5:ENST00000656437.1:ENST00000488215.5:ENST00000460659.5:ENST00000492766.5:ENST00000465125.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	22	2	3.89856	4.10591	4.31326	0.0280943	0.0141817	0.137011	0.0959618
chr1	167400062	167400160	246672	0	+	0.561224	(0.515,0.57]	chr1	29383	3	INTRON	INTRON	POU2F1	ENSG00000143190.23	ENST00000367866.7:ENST00000271411.8:ENST00000429375.6:ENST00000367865.5:ENST00000541643.7:ENST00000648671.1:ENST00000367862.9:ENST00000420254.7:ENST00000443275.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	22	2	3.89856	4.10591	4.31326	0.0280943	0.0141817	0.137011	0.0959618
chr1	224274542	224274641	644342	0	-	0.545455	(0.515,0.57]	chr1	76099	48	INTRON	INTRON	NVL	ENSG00000143748.18	ENST00000391875.6:ENST00000469968.5:ENST00000482491.5:ENST00000281701.11:ENST00000469075.5:ENST00000340871.8	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.89856	4.10591	4.31326	0.0280943	0.0141817	0.137011	0.0959618
chr10	63520837	63520937	4635942	0	-	0.53	(0.515,0.57]	chr10	426242	550	INTRON	INTRON	JMJD1C	ENSG00000171988.20	ENST00000633035.1	protein_coding	processed_transcript	protein_coding	processed_transcript	0	22	2	3.89856	4.10591	4.31326	0.0280943	0.0141817	0.137011	0.0959618
chr16	89354470	89354569	6542222	0	-	0.535354	(0.515,0.57]	chr16	634215	108	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000647238.1:ENST00000644045.1:ENST00000643147.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	22	2	3.89856	4.10591	4.31326	0.0280943	0.0141817	0.137011	0.0959618
chr17	51022163	51022262	6796021	0	-	0.525253	(0.515,0.57]	chr17	670985	4	INTRON	INTRON	SPAG9	ENSG00000008294.22	ENST00000262013.12:ENST00000510283.5:ENST00000505279.5:ENST00000357122.8:ENST00000514613.5:ENST00000505173.5:ENST00000576492.1:ENST00000510855.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	22	2	3.89856	4.10591	4.31326	0.0280943	0.0141817	0.137011	0.0959618
chr17	81625356	81625455	6849492	0	-	0.545455	(0.515,0.57]	chr17	678237	27	INTRON	INTRON	NPLOC4	ENSG00000182446.14	ENST00000331134.11:ENST00000374747.9:ENST00000574897.5:ENST00000625705.1:ENST00000570300.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	22	2	3.89856	4.10591	4.31326	0.0280943	0.0141817	0.137011	0.0959618
chr17	82403594	82403694	6853024	0	-	0.55	(0.515,0.57]	chr17	679216	3	SS5_PROX	SS5_PROX:INTRON	OGFOD3	ENSG00000181396.13	ENST00000313056.10:ENST00000329197.9:ENST00000583897.5:ENST00000580445.5:ENST00000579407.5:ENST00000583445.5:ENST00000582593.1:ENST00000577495.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	22	2	3.89856	4.10591	4.31326	0.0280943	0.0141817	0.137011	0.0959618
chr19	2793773	2793871	6997526	0	+	0.55102	(0.515,0.57]	chr19	693784	28	INTRON	INTRON	THOP1	ENSG00000172009.15	ENST00000307741.11:ENST00000585673.5:ENST00000585338.1:ENST00000586780.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	22	2	3.89856	4.10591	4.31326	0.0280943	0.0141817	0.137011	0.0959618
chr2	108561825	108561925	846120	0	+	0.53	(0.515,0.57]	chr2	94661	269	INTRON	INTRON	LIMS1	ENSG00000169756.17	ENST00000695516.1:ENST00000544547.6:ENST00000695517.1	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.89856	4.10591	4.31326	0.0280943	0.0141817	0.137011	0.0959618
chr20	58882227	58882327	7290908	0	+	0.53	(0.515,0.57]	chr20	741797	252	INTRON	INTRON	GNAS	ENSG00000087460.29	ENST00000313949.11:ENST00000371075.7:ENST00000419558.7:ENST00000371098.6:ENST00000657090.1:ENST00000453292.7:ENST00000306090.12:ENST00000491348.5:ENST00000472183.6:ENST00000462499.6:ENST00000482112.6:ENST00000663479.2:ENST00000493744.5:ENST00000490374.6:ENST00000467227.6:ENST00000676826.2:ENST00000481768.6:ENST00000371100.9:ENST00000371102.8:ENST00000464624.7:ENST00000349036.9:ENST00000423897.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	22	2	3.89856	4.10591	4.31326	0.0280943	0.0141817	0.137011	0.0959618
chr21	29417886	29417986	7393558	0	+	0.52	(0.515,0.57]	chr21	753248	443	INTRON	INTRON	BACH1	ENSG00000156273.16	ENST00000422809.5:ENST00000468059.1	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.89856	4.10591	4.31326	0.0280943	0.0141817	0.137011	0.0959618
chr22	46271736	46271834	7533234	0	+	0.55102	(0.515,0.57]	chr22	770203	21	INTRON	INTRON	TTC38	ENSG00000075234.17	ENST00000417709.5:ENST00000381031.8:ENST00000421359.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	22	2	3.89856	4.10591	4.31326	0.0280943	0.0141817	0.137011	0.0959618
chr22	46766363	46766462	7535219	0	+	0.525253	(0.515,0.57]	chr22	770538	17	INTRON	INTRON	TBC1D22A	ENSG00000054611.14	ENST00000380995.5:ENST00000337137.9:ENST00000441936.5:ENST00000486163.5:ENST00000407381.7:ENST00000355704.7:ENST00000394449.6:ENST00000496139.5:ENST00000472791.5:ENST00000441162.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	22	2	3.89856	4.10591	4.31326	0.0280943	0.0141817	0.137011	0.0959618
chr4	56969407	56969505	2151734	0	-	0.540816	(0.515,0.57]	chr4	211829	5	INTRON	INTRON	NOA1	ENSG00000084092.7	ENST00000264230.5	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.89856	4.10591	4.31326	0.0280943	0.0141817	0.137011	0.0959618
chr5	104229184	104229284	2442707	0	+	0.54	(0.515,0.57]	chr5	234410	1239	INTRON	INTRON	LINC02163	ENSG00000251026.2	ENST00000662211.1:ENST00000666145.1	lncRNA	lncRNA	lncRNA	lncRNA	0	22	2	3.89856	4.10591	4.31326	0.0280943	0.0141817	0.137011	0.0959618
chr7	133369938	133370038	3419335	0	+	0.52	(0.515,0.57]	chr7	319337	130	INTRON	INTRON	EXOC4	ENSG00000131558.15	ENST00000486013.5:ENST00000393161.6:ENST00000253861.5:ENST00000462055.5:ENST00000480840.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	22	2	3.89856	4.10591	4.31326	0.0280943	0.0141817	0.137011	0.0959618
chrX	18319135	18319234	7770697	0	-	0.565657	(0.515,0.57]	chrX	794182	136	INTRON	INTRON	SCML2	ENSG00000102098.19	ENST00000251900.9	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.89856	4.10591	4.31326	0.0280943	0.0141817	0.137011	0.0959618
chr8	95134930	95135030	3803004	0	+	0.39	(0.378,0.408]	chr8	352652	2	INTRON	INTRON	PLEKHF2	ENSG00000175895.4	ENST00000315367.4:ENST00000519516.1	protein_coding	protein_coding	protein_coding	protein_coding	9	132	2	1.61107	4.10557	6.60007	0.0105	3.11297e-6	0.0907259	0.00125281
chr10	49950833	49950932	4432714	0	+	0.353535	(0.35,0.378]	chr10	408674	54	INTRON	INTRON	TIMM23B:TIMM23B-AGAP6	ENSG00000204152.14:ENSG00000178440.8	ENST00000478381.5:ENST00000651259.3:ENST00000651763.1:ENST00000651208.1:ENST00000652716.1:ENST00000483296.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	50	2	3.10863	4.105445	5.10226	0.00470896	0.00327038	0.0631419	0.0508595
chr5	88218664	88218763	2669233	0	-	0.373737	(0.35,0.378]	chr5	252658	111	INTRON	INTRON	TMEM161B	ENSG00000164180.14	ENST00000514135.5:ENST00000296595.11:ENST00000511087.5:ENST00000510089.5:ENST00000506536.5:ENST00000511218.5:ENST00000512429.5:ENST00000507872.1:ENST00000509387.5:ENST00000503755.5:ENST00000513487.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	50	2	3.10863	4.105445	5.10226	0.00470896	0.00327038	0.0631419	0.0508595
chr1	245977595	245977695	675406	0	-	0.51	(0.476,0.515]	chr1	79709	216	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000493441.5:ENST00000488153.5:ENST00000492487.5:ENST00000391836.3:ENST00000464398.1:ENST00000453676.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	51	2	3.15202	4.105245	5.05847	0.00455841	0.00108081	0.0595107	0.0300133
chr11	67297496	67297595	4814189	0	+	0.464646	(0.44,0.476]	chr11	448332	50	INTRON	INTRON	ANKRD13D	ENSG00000172932.16	ENST00000511455.7:ENST00000308440.11:ENST00000447274.7:ENST00000506531.5:ENST00000504186.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	53	2	3.35227	4.10522	4.85817	0.00223254	0.0022005699999999998	0.0435144	0.0417893
chr1	174407625	174407724	259606	0	+	0.373737	(0.35,0.378]	chr1	30818	131	INTRON	INTRON	RABGAP1L	ENSG00000152061.24	ENST00000357444.10:ENST00000251507.8:ENST00000681986.1:ENST00000367690.5:ENST00000526253.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	69	2	2.34278	4.10488	5.86698	0.0129593	1.76496e-4	0.0991015	0.01216
chr20	35066809	35066908	7332644	0	-	0.282828	(0.28,0.32]	chr20	746961	89	INTRON	INTRON	TRPC4AP	ENSG00000100991.12	ENST00000252015.3:ENST00000451813.6	protein_coding	protein_coding	protein_coding	protein_coding	1	55	2	3.22074	4.10473	4.98872	0.00838468	0.00362783	0.0774402	0.055479
chr7	148855904	148856004	3670479	0	-	0.22	[0,0.28]	chr7	340628	82	INTRON	INTRON	EZH2	ENSG00000106462.12	ENST00000683292.1:ENST00000320356.7:ENST00000492143.5:ENST00000478654.5:ENST00000350995.6:ENST00000460911.5:ENST00000683744.1:ENST00000682317.1:ENST00000682263.1:ENST00000684300.1:ENST00000476773.5:ENST00000483967.5:ENST00000498186.5:ENST00000483012.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	65	2	2.64309	4.1046	5.56611	0.0308646	7.02173e-4	0.13151	0.0241881
chr17	30139218	30139317	6587614	0	+	0.333333	(0.32,0.35]	chr17	640563	111	INTRON	INTRON	NSRP1	ENSG00000126653.18	ENST00000540900.7:ENST00000612959.4:ENST00000247026.10:ENST00000577289.6:ENST00000584154.5:ENST00000394826.8:ENST00000475652.5:ENST00000584317.5:ENST00000583301.5:ENST00000585881.5:ENST00000467446.6:ENST00000580103.6:ENST00000581048.5:ENST00000588614.1:ENST00000589608.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	96	2	2.24224	4.10455	5.96686	0.00393422	1.77352e-4	0.0572563	0.0121697
chr1	43662195	43662294	85605	0	+	0.333333	(0.32,0.35]	chr1	11529	14	INTRON	INTRON	KDM4A	ENSG00000066135.13	ENST00000372396.4:ENST00000463151.5:ENST00000485249.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	52	2	3.13277	4.1045300000000005	5.07629	0.00468114	0.00458313	0.0622676	0.0600108
chr10	48351229	48351329	4431435	0	+	0.35	(0.32,0.35]	chr10	408569	249	INTRON	INTRON	MAPK8	ENSG00000107643.17	ENST00000395611.7:ENST00000432379.5:ENST00000374189.6:ENST00000429041.6:ENST00000374179.8:ENST00000426557.5:ENST00000476134.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	52	2	3.13277	4.1045300000000005	5.07629	0.00468114	0.00458313	0.0622676	0.0600108
chr1	211946406	211946506	631474	0	-	0.47	(0.44,0.476]	chr1	74681	4	SS5_PROX	SS5_PROX:INTRON	INTS7	ENSG00000143493.13	ENST00000469606.5:ENST00000366994.8:ENST00000366993.7:ENST00000366992.7:ENST00000440600.6:ENST00000612340.1:ENST00000475798.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	85	2	2.61896	4.104425	5.58989	0.0017827	9.76499e-5	0.0379201	0.00830626
chr11	9461744	9461842	4730097	0	+	0.336735	(0.32,0.35]	chr11	437972	2	UTR5	UTR5:EXON_MRNA:INTRON	ZNF143	ENSG00000166478.10	ENST00000531943.5:ENST00000396604.5:ENST00000530463.5:ENST00000533542.5:ENST00000532577.5:ENST00000396597.7:ENST00000438144.6:ENST00000396602.7:ENST00000496276.5:ENST00000526657.5:ENST00000299606.6:ENST00000534265.5:ENST00000412390.6:ENST00000414370.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	52	2	3.0247	4.104425	5.18415	0.00671684	0.00333629	0.0738715	0.0512081
chr5	178142103	178142199	2559292	0	+	0.291667	(0.28,0.32]	chr5	244597	9	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	RMND5B	ENSG00000145916.19	ENST00000515098.5:ENST00000507575.5:ENST00000313386.9:ENST00000502814.5:ENST00000512663.5:ENST00000507457.5:ENST00000508647.5:ENST00000542098.2:ENST00000512811.5:ENST00000515360.5:ENST00000513162.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	55	2	2.86113	4.10439	5.34765	0.0122675	0.00287138	0.0969406	0.0474836
chr7	158924717	158924814	3456831	0	+	0.371134	(0.35,0.378]	chr7	323232	6	INTRON	INTRON	DYNC2I1	ENSG00000126870.16	ENST00000407559.8:ENST00000444851.5:ENST00000467220.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	50	2	3.05136	4.1042950000000005	5.15723	0.00578894	0.00272706	0.0684334	0.0467523
chr1	84652694	84652793	496382	0	-	0.585859	(0.57,1]	chr1	58833	3	INTRON	INTRON	SSX2IP	ENSG00000117155.17	ENST00000342203.8:ENST00000437941.6:ENST00000481102.5:ENST00000476905.6:ENST00000605755.5:ENST00000603677.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	32	2	3.31859	4.104285	4.88998	0.00137292	4.016e-4	0.0340241	0.0185763
chr3	71446453	71446553	1743782	0	-	0.6	(0.57,1]	chr3	177319	858	INTRON	INTRON	FOXP1	ENSG00000114861.24	ENST00000318789.11:ENST00000649528.3:ENST00000615603.5:ENST00000493089.7:ENST00000649596.1:ENST00000648710.2:ENST00000327590.9:ENST00000648321.1:ENST00000649610.2:ENST00000648718.1:ENST00000649631.1:ENST00000648384.1:ENST00000648380.1:ENST00000650068.2:ENST00000650295.1:ENST00000648895.1:ENST00000318779.7:ENST00000471386.3:ENST00000650156.1:ENST00000649133.1:ENST00000649145.1:ENST00000648192.1:ENST00000649328.1:ENST00000649175.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	32	2	3.31859	4.104285	4.88998	0.00137292	4.016e-4	0.0340241	0.0185763
chr1	113902862	113902962	526663	0	-	0.39	(0.378,0.408]	chr1	62031	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	AP4B1	ENSG00000134262.13	ENST00000369569.6:ENST00000256658.8:ENST00000369567.5:ENST00000484201.5:ENST00000369564.5:ENST00000489499.5:ENST00000432415.5:ENST00000489092.5:ENST00000369571.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	71	2	2.63057	4.104195	5.57782	0.0053733	1.18586e-4	0.0642754	0.00930884
chr1	23440801	23440901	399849	0	-	0.42	(0.408,0.44]	chr1	47988	3	SS5_PROX	SS5_PROX:INTRON	ASAP3	ENSG00000088280.20	ENST00000336689.8:ENST00000492982.6:ENST00000437606.6:ENST00000475814.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	23	2	3.97679	4.1038749999999995	4.23096	0.0299485	0.0278028	0.142135	0.123904
chr1	52991383	52991481	106095	0	+	0.428571	(0.408,0.44]	chr1	13865	29	INTRON	INTRON	SCP2	ENSG00000116171.19	ENST00000371514.8:ENST00000478631.6:ENST00000407246.6:ENST00000371509.8:ENST00000528311.5:ENST00000371513.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	23	2	3.97679	4.1038749999999995	4.23096	0.0299485	0.0278028	0.142135	0.123904
chr1	234375583	234375682	339158	0	+	0.414141	(0.408,0.44]	chr1	39481	8	INTRON	INTRON	COA6	ENSG00000168275.16	ENST00000366615.10:ENST00000619305.1:ENST00000366613.1:ENST00000366612.1	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	3.97679	4.1038749999999995	4.23096	0.0299485	0.0278028	0.142135	0.123904
chr15	44464983	44465083	6014726	0	+	0.44	(0.408,0.44]	chr15	572922	54	INTRON	INTRON	CTDSPL2	ENSG00000137770.14	ENST00000558791.5:ENST00000260327.9:ENST00000560834.1:ENST00000558966.5:ENST00000559793.5:ENST00000558968.1:ENST00000558373.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	23	2	3.97679	4.1038749999999995	4.23096	0.0299485	0.0278028	0.142135	0.123904
chr15	79875319	79875419	6240682	0	-	0.42	(0.408,0.44]	chr15	595749	295	INTRON	INTRON	MTHFS:ST20-MTHFS	ENSG00000136371.11:ENSG00000259332.3	ENST00000258874.4:ENST00000559722.2:ENST00000615374.5:ENST00000479961.1:ENST00000494999.1	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	3.97679	4.1038749999999995	4.23096	0.0299485	0.0278028	0.142135	0.123904
chr16	20790386	20790486	6317861	0	+	0.44	(0.408,0.44]	chr16	604646	4	SS3_PROX	SS3_PROX:INTRON	ACSM3	ENSG00000005187.12	ENST00000289416.10:ENST00000562251.5:ENST00000567387.5:ENST00000569141.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	23	2	3.97679	4.1038749999999995	4.23096	0.0299485	0.0278028	0.142135	0.123904
chr17	42371664	42371763	6772859	0	-	0.424242	(0.408,0.44]	chr17	667104	228	INTRON	INTRON	STAT3	ENSG00000168610.16	ENST00000264657.10:ENST00000678044.1:ENST00000678906.1:ENST00000678960.1:ENST00000679014.1:ENST00000678043.1:ENST00000677442.1:ENST00000677723.1:ENST00000679166.1:ENST00000678792.1:ENST00000678764.1:ENST00000678048.1:ENST00000678674.1:ENST00000678445.1:ENST00000678913.1:ENST00000677421.1:ENST00000679231.1:ENST00000677030.1:ENST00000678827.1:ENST00000679185.1:ENST00000677820.1:ENST00000678905.1:ENST00000677479.1:ENST00000676636.1:ENST00000678572.1:ENST00000677271.1:ENST00000677152.1:ENST00000677603.1:ENST00000585517.5:ENST00000678535.1:ENST00000677308.1:ENST00000389272.7:ENST00000588969.5:ENST00000677763.1:ENST00000404395.3:ENST00000678659.1:ENST00000678108.1:ENST00000678529.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	23	2	3.97679	4.1038749999999995	4.23096	0.0299485	0.0278028	0.142135	0.123904
chr19	38315224	38315324	7180131	0	-	0.41	(0.408,0.44]	chr19	725643	4	SS5_PROX	SS5_PROX:INTRON	YIF1B	ENSG00000167645.17	ENST00000339413.11:ENST00000592694.5:ENST00000337679.12:ENST00000591784.5:ENST00000329420.12:ENST00000591755.5:ENST00000589644.1:ENST00000585563.5:ENST00000589247.1:ENST00000587361.1:ENST00000587039.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	23	2	3.97679	4.1038749999999995	4.23096	0.0299485	0.0278028	0.142135	0.123904
chr19	52059597	52059697	7205497	0	-	0.43	(0.408,0.44]	chr19	731274	97	INTRON	INTRON	ZNF432	ENSG00000256087.7	ENST00000600368.5:ENST00000598446.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	23	2	3.97679	4.1038749999999995	4.23096	0.0299485	0.0278028	0.142135	0.123904
chr2	38313834	38313925	1098699	0	-	0.417582	(0.408,0.44]	chr2	117831	2	INTRON	INTRON	ATL2	ENSG00000119787.14	ENST00000378954.9:ENST00000406122.5:ENST00000405384.6:ENST00000402054.5:ENST00000419554.6:ENST00000651368.1:ENST00000452935.6:ENST00000629272.2:ENST00000449130.5:ENST00000443098.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	23	2	3.97679	4.1038749999999995	4.23096	0.0299485	0.0278028	0.142135	0.123904
chr2	235623014	235623114	1042627	0	+	0.43	(0.408,0.44]	chr2	111222	981	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1:ENST00000402604.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	23	2	3.97679	4.1038749999999995	4.23096	0.0299485	0.0278028	0.142135	0.123904
chr5	77757407	77757507	2647045	0	-	0.44	(0.408,0.44]	chr5	251578	422	INTRON	INTRON	TBCA	ENSG00000171530.15	ENST00000380377.9:ENST00000306388.10:ENST00000520361.5:ENST00000651106.1:ENST00000518338.6:ENST00000522370.1:ENST00000520039.1	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	3.97679	4.1038749999999995	4.23096	0.0299485	0.0278028	0.142135	0.123904
chr6	43494592	43494692	2870790	0	+	0.43	(0.408,0.44]	chr6	272136	44	INTRON	INTRON	TJAP1	ENSG00000137221.14	ENST00000372444.6:ENST00000372445.9:ENST00000436109.6:ENST00000372454.6:ENST00000259751.5:ENST00000372452.5:ENST00000372449.5:ENST00000442878.6:ENST00000438588.6:ENST00000483640.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	23	2	3.97679	4.1038749999999995	4.23096	0.0299485	0.0278028	0.142135	0.123904
chr6	89728736	89728830	3161087	0	-	0.414894	(0.408,0.44]	chr6	294697	4	SS5_PROX	SS5_PROX:INTRON	MDN1	ENSG00000112159.12	ENST00000369393.8:ENST00000629399.2	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	3.97679	4.1038749999999995	4.23096	0.0299485	0.0278028	0.142135	0.123904
chr6	110757290	110757390	3189875	0	-	0.41	(0.408,0.44]	chr6	297121	107	INTRON	INTRON	CDK19	ENSG00000155111.15	ENST00000323817.7:ENST00000368911.8:ENST00000413605.6:ENST00000457688.5:ENST00000460913.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	23	2	3.97679	4.1038749999999995	4.23096	0.0299485	0.0278028	0.142135	0.123904
chr6	129626852	129626952	3217972	0	-	0.43	(0.408,0.44]	chr6	299107	76	INTRON	INTRON	ARHGAP18	ENSG00000146376.11	ENST00000368149.3	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	3.97679	4.1038749999999995	4.23096	0.0299485	0.0278028	0.142135	0.123904
chr6	169753186	169753286	3035884	0	+	0.44	(0.408,0.44]	chr6	282924	1	SS3_ADJ	SS3_ADJ:SS5_ADJ:SS3_PROX:SS5_PROX:INTRON	ERMARD	ENSG00000130023.16	ENST00000366773.8:ENST00000366772.6:ENST00000590711.5:ENST00000592367.5:ENST00000392095.8:ENST00000592315.5:ENST00000592745.5:ENST00000418781.7:ENST00000586341.5:ENST00000592580.5:ENST00000588437.5:ENST00000588451.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	23	2	3.97679	4.1038749999999995	4.23096	0.0299485	0.0278028	0.142135	0.123904
chr7	36437907	36438007	3307505	0	+	0.43	(0.408,0.44]	chr7	307191	92	INTRON	INTRON	ANLN	ENSG00000011426.11	ENST00000396068.6:ENST00000265748.7:ENST00000428612.5:ENST00000457743.1	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	3.97679	4.1038749999999995	4.23096	0.0299485	0.0278028	0.142135	0.123904
chr7	104181552	104181652	3600176	0	-	0.43	(0.408,0.44]	chr7	335970	127	INTRON	INTRON	ORC5	ENSG00000164815.11	ENST00000297431.9:ENST00000422497.5:ENST00000447452.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	23	2	3.97679	4.1038749999999995	4.23096	0.0299485	0.0278028	0.142135	0.123904
chr7	111176117	111176217	3620243	0	-	0.42	(0.408,0.44]	chr7	337093	2122	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	23	2	3.97679	4.1038749999999995	4.23096	0.0299485	0.0278028	0.142135	0.123904
chr8	27309802	27309902	3926615	0	-	0.44	(0.408,0.44]	chr8	359505	109	INTRON	INTRON	TRIM35	ENSG00000104228.13	ENST00000305364.9:ENST00000521253.1:ENST00000519219.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	23	2	3.97679	4.1038749999999995	4.23096	0.0299485	0.0278028	0.142135	0.123904
chrX	130094332	130094432	7887430	0	-	0.42	(0.408,0.44]	chrX	803067	124	INTRON	INTRON	ELF4	ENSG00000102034.18	ENST00000308167.10:ENST00000335997.11:ENST00000434609.1	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	3.97679	4.1038749999999995	4.23096	0.0299485	0.0278028	0.142135	0.123904
chr3	47095771	47095870	1680909	0	-	0.252525	[0,0.28]	chr3	171569	72	INTRON	INTRON	SETD2	ENSG00000181555.22	ENST00000691544.1:ENST00000638947.2:ENST00000686876.1:ENST00000431180.5:ENST00000409792.4:ENST00000330022.11:ENST00000686773.1:ENST00000685005.1:ENST00000690461.1:ENST00000685505.1:ENST00000692883.1:ENST00000693321.1:ENST00000688290.1:ENST00000691902.1:ENST00000690157.1:ENST00000692362.1:ENST00000685237.1:ENST00000445387.5:ENST00000685399.1:ENST00000484689.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	60	2	3.2621000000000002	4.103855	4.94561	0.0150263	0.00367113	0.0994339	0.056059199999999997
chr7	5205835	5205935	3272118	0	+	0.39	(0.378,0.408]	chr7	304097	58	INTRON	INTRON	WIPI2	ENSG00000157954.15	ENST00000401525.7:ENST00000288828.9:ENST00000404704.7:ENST00000466014.5:ENST00000485854.5:ENST00000382384.6:ENST00000496867.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	65	2	2.82967	4.10353	5.37739	0.00189968	0.0010014	0.0402736	0.0288906
chr7	128579498	128579598	3407843	0	+	0.39	(0.378,0.408]	chr7	318353	1	SS3_PROX	SS3_PROX:INTRON	ENSG00000280828:ENSG00000242588	ENSG00000280828.1:ENSG00000242588.6	ENST00000479267.2:ENST00000605862.5	lncRNA	lncRNA	lncRNA:unprocessed_pseudogene	lncRNA:unprocessed_pseudogene	2	65	2	2.82967	4.10353	5.37739	0.00189968	0.0010014	0.0402736	0.0288906
chr20	35009422	35009510	7332059	0	-	0.477273	(0.476,0.515]	chr20	746905	3	INTRON	INTRON	TRPC4AP	ENSG00000100991.12	ENST00000252015.3:ENST00000451813.6	protein_coding	protein_coding	protein_coding	protein_coding	1	48	2	3.29939	4.1035	4.90761	0.00386428	0.00211868	0.0542786	0.0425644
chr1	245825010	245825110	673872	0	-	0.4	(0.378,0.408]	chr1	79669	102	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000366517.5:ENST00000366516.5:ENST00000490107.6:ENST00000470510.5:ENST00000483072.5:ENST00000493441.5:ENST00000488153.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	49	2	2.92665	4.10349	5.28033	0.0086017	0.00143651	0.083729	0.0340925
chr2	121496497	121496596	1220849	0	-	0.383838	(0.378,0.408]	chr2	129999	63	INTRON	INTRON	CLASP1	ENSG00000074054.20	ENST00000263710.8:ENST00000397587.7:ENST00000541377.5:ENST00000409078.8:ENST00000455322.6:ENST00000452274.6:ENST00000418989.5:ENST00000449975.1:ENST00000474065.5:ENST00000480007.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	49	2	2.92665	4.10349	5.28033	0.0086017	0.00143651	0.083729	0.0340925
chr8	67154636	67154716	3777569	0	+	0.4875	(0.476,0.515]	chr8	350405	1	INTRON	INTRON	CSPP1	ENSG00000104218.16	ENST00000676113.1:ENST00000675306.2:ENST00000678156.1:ENST00000262210.11:ENST00000678017.1:ENST00000675869.1:ENST00000678542.1:ENST00000677619.1:ENST00000676605.1:ENST00000676471.1:ENST00000677256.1:ENST00000676847.1:ENST00000677009.1:ENST00000676317.1:ENST00000677592.1:ENST00000676573.1:ENST00000678318.1:ENST00000677473.1:ENST00000674993.1:ENST00000679226.1:ENST00000676882.1:ENST00000675955.1:ENST00000677430.1:ENST00000677455.1:ENST00000678616.1:ENST00000678362.1:ENST00000679112.1:ENST00000678645.1:ENST00000676567.1:ENST00000677845.1:ENST00000519163.6:ENST00000676858.1:ENST00000678747.1:ENST00000519668.1:ENST00000676697.1:ENST00000677855.1:ENST00000676695.1:ENST00000676534.1:ENST00000678138.1:ENST00000678807.1:ENST00000677052.1:ENST00000679274.1:ENST00000679042.1:ENST00000678635.1:ENST00000676804.1:ENST00000679295.1:ENST00000677964.1:ENST00000676968.1:ENST00000678895.1:ENST00000678723.1:ENST00000677131.1:ENST00000521324.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	48	2	2.94692	4.103185	5.25945	0.00794331	0.00111445	0.0797304	0.0306328
chr3	37317970	37318069	1396512	0	+	0.232323	[0,0.28]	chr3	146397	20	INTRON	INTRON	GOLGA4	ENSG00000144674.17	ENST00000435830.6:ENST00000444882.5:ENST00000356847.8:ENST00000361924.7:ENST00000429018.5:ENST00000437131.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	59	2	3.09587	4.1031	5.11033	0.00991388	0.00651565	0.0838372	0.0735232
chr3	136319355	136319455	1511862	0	+	0.43	(0.408,0.44]	chr3	158130	19	INTRON	INTRON	PCCB	ENSG00000114054.14	ENST00000251654.9:ENST00000490504.5:ENST00000483687.5:ENST00000468777.5:ENST00000462637.5:ENST00000466072.5:ENST00000484181.5:ENST00000482086.5:ENST00000471595.5:ENST00000469217.5:ENST00000478469.5:ENST00000474833.5:ENST00000475214.5:ENST00000473073.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	83	2	2.2644	4.10291	5.94142	0.00768371	1.51568e-5	0.0753803	0.00293131
chr6	80020237	80020336	2907742	0	+	0.313131	(0.28,0.32]	chr6	274734	53	INTRON	INTRON	TTK	ENSG00000112742.10	ENST00000509894.5:ENST00000230510.7:ENST00000369798.7:ENST00000515751.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	57	2	3.47062	4.10268	4.73474	0.0162835	0.00137212	0.101453	0.0340241
chr17	16345503	16345600	6735303	0	-	0.43299	(0.408,0.44]	chr17	660784	4	INTRON	INTRON	CENPV	ENSG00000166582.11	ENST00000476243.5:ENST00000299736.5:ENST00000482983.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	48	2	2.96007	4.102539999999999	5.24501	0.00753901	0.00137378	0.0773151	0.0336718
chr7	101907307	101907407	3367262	0	+	0.33	(0.32,0.35]	chr7	315215	880	INTRON	INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000497815.5:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000607092.1:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000558469.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	53	2	3.3721	4.102485	4.83287	0.0095071	0.00182912	0.0817766	0.0396683
chr6	45299707	45299807	3103204	0	-	0.36	(0.35,0.378]	chr6	290480	482	INTRON	INTRON	SUPT3H	ENSG00000196284.17	ENST00000475057.5:ENST00000371459.6:ENST00000371460.5:ENST00000459689.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	104	2	1.81752	4.10242	6.38732	0.0130467	1.48233e-5	0.0994973	0.00309621
chr11	28129556	28129656	4752370	0	+	0.47	(0.44,0.476]	chr11	440090	38	INTRON	INTRON	METTL15	ENSG00000169519.21	ENST00000406787.7:ENST00000451385.6:ENST00000407364.8:ENST00000532947.2:ENST00000634627.1:ENST00000634973.1:ENST00000303459.10:ENST00000634721.1:ENST00000634762.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	51	2	2.80275	4.102135	5.40152	0.0146513	2.39829e-4	0.0982604	0.0136403
chr18	32095282	32095382	6887293	0	+	0.49	(0.476,0.515]	chr18	682655	20	INTRON	INTRON	RNF138	ENSG00000134758.14	ENST00000261593.8:ENST00000585103.5:ENST00000578914.1:ENST00000580519.1:ENST00000578107.5:ENST00000583733.1:ENST00000257190.9:ENST00000580499.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	66	2	2.32001	4.10169	5.88337	0.0136217	7.59355e-5	0.101682	0.00777694
chr1	15532348	15532447	32853	0	+	0.333333	(0.32,0.35]	chr1	3981	27	INTRON	INTRON	DNAJC16	ENSG00000116138.13	ENST00000375849.5:ENST00000475133.5:ENST00000616884.4:ENST00000375838.5:ENST00000375847.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	52	2	3.18392	4.101545	5.01917	0.0055659	0.00379806	0.0648867	0.0562562
chr14	96812654	96812754	5811007	0	+	0.35	(0.32,0.35]	chr14	551001	125	INTRON	INTRON	VRK1	ENSG00000100749.9	ENST00000553683.2:ENST00000680538.1:ENST00000555351.2:ENST00000681195.1:ENST00000681524.1:ENST00000680084.1:ENST00000679533.1:ENST00000681598.1:ENST00000679727.1:ENST00000679758.1:ENST00000680509.1:ENST00000557222.6:ENST00000679977.1:ENST00000680387.1:ENST00000680335.1:ENST00000680683.1:ENST00000681474.1:ENST00000216639.8:ENST00000681363.1:ENST00000681538.1:ENST00000679736.1:ENST00000681176.1:ENST00000680922.1:ENST00000679903.1:ENST00000557352.2:ENST00000681101.1:ENST00000681419.1:ENST00000680348.1:ENST00000679941.1:ENST00000679452.1:ENST00000680849.1:ENST00000679770.1:ENST00000681493.1:ENST00000681778.1:ENST00000680993.1:ENST00000681355.1:ENST00000681695.1:ENST00000681344.1:ENST00000680007.1:ENST00000679918.1:ENST00000681785.1:ENST00000679816.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	52	2	2.96746	4.10133	5.2352	0.00815799	0.0028268	0.0810802	0.0472361
chr8	22462354	22462454	3713532	0	+	0.35	(0.32,0.35]	chr8	344875	205	INTRON	INTRON	PPP3CC	ENSG00000120910.15	ENST00000518852.5:ENST00000240139.10:ENST00000289963.12:ENST00000397775.7:ENST00000522000.1	protein_coding	protein_coding	protein_coding	protein_coding	1	52	2	2.96746	4.10133	5.2352	0.00815799	0.0028268	0.0810802	0.0472361
chr16	22517502	22517602	6322789	0	+	0.41	(0.408,0.44]	chr16	605468	4	SS5_PROX	SS5_PROX:INTRON	NPIPB5	ENSG00000243716.11	ENST00000415654.5:ENST00000415833.6:ENST00000543407.5:ENST00000541154.5:ENST00000545375.5:ENST00000544308.5:ENST00000424340.6:ENST00000521555.6:ENST00000542518.5:ENST00000540704.1:ENST00000517539.5:ENST00000541664.5:ENST00000528249.5:ENST00000517347.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	69	2	2.40661	4.10123	5.79585	0.011475	3.36399e-5	0.0888882	0.00463632
chr15	63804538	63804638	6200611	0	-	0.37	(0.35,0.378]	chr15	591445	236	INTRON	INTRON	HERC1	ENSG00000103657.14	ENST00000443617.7:ENST00000561400.1:ENST00000559886.1:ENST00000558532.1:ENST00000560462.1:ENST00000560316.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	50	2	3.21677	4.10119	4.98561	0.00474226	0.00313804	0.0600445	0.0514466
chr15	84715166	84715266	6252019	0	-	0.37	(0.35,0.378]	chr15	596688	3	SS3_PROX	SS3_PROX:INTRON	SEC11A	ENSG00000140612.14	ENST00000559729.5:ENST00000268220.12:ENST00000560266.5:ENST00000558134.5:ENST00000558217.5:ENST00000455959.7:ENST00000560409.5:ENST00000558196.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	50	2	3.21677	4.10119	4.98561	0.00474226	0.00313804	0.0600445	0.0514466
chr8	95048658	95048758	3802302	0	+	0.37	(0.35,0.378]	chr8	352606	1	SS5_PROX	SS5_PROX:INTRON	NDUFAF6	ENSG00000156170.13	ENST00000396113.5:ENST00000396111.6:ENST00000396124.9:ENST00000518258.5:ENST00000517976.5:ENST00000520757.1:ENST00000454358.6:ENST00000523184.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	50	2	3.21677	4.10119	4.98561	0.00474226	0.00313804	0.0600445	0.0514466
chr4	70934727	70934827	1970829	0	+	0.37	(0.35,0.378]	chr4	197571	318	INTRON	INTRON	MOB1B	ENSG00000173542.9	ENST00000502869.5:ENST00000509041.5:ENST00000309395.7:ENST00000396051.2:ENST00000511449.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	51	2	3.41139	4.10109	4.79079	0.00846427	0.00143263	0.0776969	0.0347139
chr7	75479049	75479148	3558860	0	-	0.323232	(0.32,0.35]	chr7	331555	35	INTRON	INTRON	POM121C:ENSG00000242073	ENSG00000272391.6:ENSG00000242073.2	ENST00000615331.5:ENST00000398379.2:ENST00000415277.2	protein_coding	protein_coding	protein_coding:transcribed_unprocessed_pseudogene	protein_coding:transcribed_unprocessed_pseudogene	2	70	2	2.82385	4.10109	5.37833	0.00217392	0.00174321	0.043502	0.0375363
chr20	45077351	45077450	7279579	0	+	0.414141	(0.408,0.44]	chr20	740107	23	UTR3	UTR3:EXON_MRNA	STK4	ENSG00000101109.12	ENST00000499879.6:ENST00000372806.8	protein_coding	protein_coding	protein_coding	protein_coding	2	69	2	2.6117	4.101075	5.59045	0.00555224	9.6776e-5	0.0648867	0.00826486
chr1	7971528	7971628	16455	0	+	0.37	(0.35,0.378]	chr1	1484	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	PARK7	ENSG00000116288.13	ENST00000493373.5:ENST00000493678.5:ENST00000377493.9:ENST00000338639.10:ENST00000377491.5:ENST00000377488.5:ENST00000497113.1:ENST00000469225.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	50	2	2.99173	4.100955	5.21018	0.00713365	0.00228003	0.0756118	0.0426265
chr3	185927806	185927903	1886499	0	-	0.371134	(0.35,0.378]	chr3	188632	12	EXON_MRNA	EXON_MRNA:INTRON	TRA2B	ENSG00000136527.19	ENST00000453386.7:ENST00000492417.5:ENST00000487615.5:ENST00000456380.5:ENST00000382191.4:ENST00000465245.1:ENST00000485530.5:ENST00000477939.1:ENST00000471134.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	50	2	2.99173	4.100955	5.21018	0.00713365	0.00228003	0.0756118	0.0426265
chr10	94563573	94563671	4499799	0	+	0.489796	(0.476,0.515]	chr10	414246	3	INTRON	INTRON	HELLS	ENSG00000119969.15	ENST00000239026.10:ENST00000371332.8:ENST00000348459.10:ENST00000419900.5:ENST00000394036.5:ENST00000394045.5:ENST00000462057.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	64	2	2.53671	4.10088	5.66505	0.00624027	2.08835e-4	0.0718843	0.0131276
chr2	58219214	58219312	1126529	0	-	0.377551	(0.35,0.378]	chr2	120943	14	INTRON	INTRON	FANCL	ENSG00000115392.13	ENST00000696400.1:ENST00000403295.8:ENST00000696492.1:ENST00000427708.7:ENST00000696314.1:ENST00000696315.1:ENST00000696454.1:ENST00000696508.1:ENST00000696548.1:ENST00000696542.1:ENST00000696319.1:ENST00000403676.6:ENST00000696433.1:ENST00000696434.1:ENST00000696499.1:ENST00000696564.1:ENST00000402135.8:ENST00000696546.1:ENST00000233741.9:ENST00000696316.1:ENST00000696378.1:ENST00000696435.1:ENST00000696493.1:ENST00000696543.1:ENST00000696544.1:ENST00000696545.1:ENST00000696565.1:ENST00000696620.1:ENST00000696621.1:ENST00000696635.1:ENST00000696364.1:ENST00000696634.1:ENST00000696317.1:ENST00000696622.1:ENST00000696467.1:ENST00000696547.1:ENST00000449070.6:ENST00000696305.1:ENST00000417361.2:ENST00000696338.1:ENST00000696361.1:ENST00000696318.1:ENST00000696371.1:ENST00000696409.1:ENST00000696410.1:ENST00000696455.1:ENST00000696468.1:ENST00000696527.1:ENST00000696567.1:ENST00000696324.1:ENST00000696566.1:ENST00000696623.1:ENST00000446381.6:ENST00000696469.1:ENST00000696624.1:ENST00000696411.1:ENST00000470506.2:ENST00000696358.1:ENST00000696373.1:ENST00000696394.1:ENST00000696320.1:ENST00000696395.1:ENST00000696341.1:ENST00000696340.1:ENST00000696374.1:ENST00000696396.1:ENST00000696342.1:ENST00000696325.1:ENST00000696399.1:ENST00000696398.1:ENST00000696306.1:ENST00000696397.1:ENST00000696360.1:ENST00000696344.1:ENST00000696343.1:ENST00000696362.1:ENST00000696528.1:ENST00000696326.1:ENST00000696625.1:ENST00000696510.1:ENST00000696438.1:ENST00000696496.1:ENST00000696509.1:ENST00000696569.1:ENST00000696457.1:ENST00000696458.1:ENST00000696473.1:ENST00000696495.1:ENST00000696415.1:ENST00000696472.1:ENST00000696459.1:ENST00000696416.1:ENST00000696530.1:ENST00000696460.1:ENST00000696570.1:ENST00000696531.1:ENST00000696307.1:ENST00000696345.1:ENST00000696377.1:ENST00000696417.1:ENST00000696594.1:ENST00000696595.1:ENST00000696379.1:ENST00000696346.1:ENST00000696380.1:ENST00000696347.1:ENST00000696461.1:ENST00000696596.1:ENST00000696549.1:ENST00000696597.1:ENST00000696550.1:ENST00000696598.1:ENST00000696321.1:ENST00000696476.1:ENST00000696477.1:ENST00000696511.1:ENST00000481670.3:ENST00000696403.1:ENST00000696551.1:ENST00000696308.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	114	2	3.76096	4.1008700000000005	4.44078	4.8203e-4	6.96251e-6	0.0203411	0.00187943
chr21	45407271	45407371	7419528	0	+	0.46	(0.44,0.476]	chr21	756409	14	INTRON	INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1	protein_coding	protein_coding	protein_coding	protein_coding	1	56	2	3.58219	4.100865	4.61954	0.00506805	8.57842e-4	0.0646039	0.0267428
chr19	11094384	11094483	7016862	0	+	0.525253	(0.515,0.57]	chr19	697422	31	INTRON	INTRON	LDLR	ENSG00000130164.14	ENST00000557933.5:ENST00000558518.6:ENST00000545707.5:ENST00000535915.5:ENST00000455727.6:ENST00000557958.1:ENST00000560502.5:ENST00000558013.5:ENST00000252444.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	51	2	3.7003	4.1006599999999995	4.50102	0.00510768	3.73715e-4	0.0646039	0.0179087
chr12	132778205	132778305	5449687	0	-	0.59	(0.57,1]	chr12	521994	4	SS3_PROX	SS3_PROX:INTRON	GOLGA3	ENSG00000090615.16	ENST00000204726.9:ENST00000450791.8:ENST00000693666.1:ENST00000688114.1:ENST00000687190.1:ENST00000690511.1:ENST00000685283.1:ENST00000691696.1:ENST00000691636.1:ENST00000690897.1:ENST00000690465.1:ENST00000456883.7:ENST00000692253.1:ENST00000687502.1:ENST00000688772.1:ENST00000687479.1:ENST00000690709.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	33	2	2.99729	4.100625	5.20396	0.00538023	5.65393e-5	0.0642754	0.00613846
chr1	10087978	10088078	19678	0	+	0.38	(0.378,0.408]	chr1	1847	150	INTRON	INTRON	UBE4B	ENSG00000130939.20	ENST00000672724.1:ENST00000253251.12:ENST00000343090.11	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	3.98867	4.100465	4.21226	0.0507	0.0177403	0.156383	0.11319
chr1	26423708	26423808	50125	0	+	0.38	(0.378,0.408]	chr1	6299	118	INTRON	INTRON	LIN28A	ENSG00000131914.11	ENST00000326279.11:ENST00000254231.4	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	3.98867	4.100465	4.21226	0.0507	0.0177403	0.156383	0.11319
chr1	61261855	61261955	129192	0	+	0.38	(0.378,0.408]	chr1	14788	267	INTRON	INTRON	NFIA	ENSG00000162599.17	ENST00000371191.5:ENST00000664495.1:ENST00000476646.5:ENST00000407417.7:ENST00000479364.1:ENST00000371189.8:ENST00000670151.1:ENST00000664149.1:ENST00000662015.1:ENST00000403491.8:ENST00000371187.7:ENST00000485903.6:ENST00000371185.6:ENST00000371184.6:ENST00000663597.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	23	2	3.98867	4.100465	4.21226	0.0507	0.0177403	0.156383	0.11319
chr1	100473674	100473774	173849	0	+	0.39	(0.378,0.408]	chr1	18861	52	INTRON	INTRON	CDC14A	ENSG00000079335.20	ENST00000646665.1:ENST00000644844.1:ENST00000635056.2:ENST00000647005.1:ENST00000647203.1:ENST00000644676.1:ENST00000361544.11:ENST00000370124.8:ENST00000336454.5:ENST00000644813.1:ENST00000646563.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	23	2	3.98867	4.100465	4.21226	0.0507	0.0177403	0.156383	0.11319
chr1	167257419	167257519	245217	0	+	0.38	(0.378,0.408]	chr1	29256	2	SS3_PROX	SS3_PROX:INTRON	POU2F1	ENSG00000143190.23	ENST00000559038.5:ENST00000367866.7:ENST00000557909.5:ENST00000271411.8:ENST00000429375.6:ENST00000560232.6:ENST00000442313.5:ENST00000367865.5:ENST00000492850.5:ENST00000541643.7:ENST00000648671.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	23	2	3.98867	4.100465	4.21226	0.0507	0.0177403	0.156383	0.11319
chr11	10505884	10505983	4734472	0	+	0.40404	(0.378,0.408]	chr11	438425	1	UTR3	UTR3:EXON_MRNA	AMPD3	ENSG00000133805.16	ENST00000444303.6:ENST00000396554.7:ENST00000396553.7:ENST00000528723.5:ENST00000529507.5:ENST00000529744.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	23	2	3.98867	4.100465	4.21226	0.0507	0.0177403	0.156383	0.11319
chr12	76828389	76828439	5174509	0	+	0.38	(0.378,0.408]	chr12	490140	1	CDS	CDS:EXON_MRNA	ZDHHC17	ENSG00000186908.15	ENST00000426126.7	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	3.98867	4.100465	4.21226	0.0507	0.0177403	0.156383	0.11319
chr12	132636424	132636524	5448620	0	-	0.39	(0.378,0.408]	chr12	521692	4	SS3_PROX	SS3_PROX:INTRON	POLE	ENSG00000177084.18	ENST00000320574.10:ENST00000434528.4:ENST00000672742.1:ENST00000672002.1:ENST00000537064.5:ENST00000535270.5:ENST00000541213.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	23	2	3.98867	4.100465	4.21226	0.0507	0.0177403	0.156383	0.11319
chr14	81279638	81279738	5936112	0	-	0.39	(0.378,0.408]	chr14	564197	5	INTRON	INTRON	STON2	ENSG00000140022.14	ENST00000553821.3:ENST00000614646.5:ENST00000555447.5:ENST00000649389.1:ENST00000652748.1:ENST00000556280.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	23	2	3.98867	4.100465	4.21226	0.0507	0.0177403	0.156383	0.11319
chr15	29745668	29745768	6124641	0	-	0.39	(0.378,0.408]	chr15	583536	25	INTRON	INTRON	TJP1	ENSG00000104067.17	ENST00000346128.10:ENST00000614355.5:ENST00000400011.6:ENST00000356107.11:ENST00000677774.1:ENST00000545208.6	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	3.98867	4.100465	4.21226	0.0507	0.0177403	0.156383	0.11319
chr15	43173844	43173943	6010864	0	+	0.393939	(0.378,0.408]	chr15	572316	38	INTRON	INTRON	TMEM62	ENSG00000137842.7	ENST00000260403.7:ENST00000564494.1:ENST00000563859.5:ENST00000569369.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	23	2	3.98867	4.100465	4.21226	0.0507	0.0177403	0.156383	0.11319
chr15	65737865	65737945	6209242	0	-	0.3875	(0.378,0.408]	chr15	592576	3	CDS	CDS:EXON_MRNA	DENND4A	ENSG00000174485.16	ENST00000443035.8:ENST00000431932.6:ENST00000635620.2:ENST00000564674.5:ENST00000568515.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	23	2	3.98867	4.100465	4.21226	0.0507	0.0177403	0.156383	0.11319
chr15	82389544	82389644	6075876	0	+	0.4	(0.378,0.408]	chr15	578727	338	INTRON	INTRON	UBE2Q2P2	ENSG00000259429.5	ENST00000618775.4	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	23	2	3.98867	4.100465	4.21226	0.0507	0.0177403	0.156383	0.11319
chr16	21410135	21410234	6460402	0	-	0.40404	(0.378,0.408]	chr16	623168	29	INTRON	INTRON	NPIPB3	ENSG00000169246.16	ENST00000504841.6:ENST00000419180.6:ENST00000448012.6:ENST00000542953.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	23	2	3.98867	4.100465	4.21226	0.0507	0.0177403	0.156383	0.11319
chr17	75331401	75331501	6837055	0	-	0.39	(0.378,0.408]	chr17	675710	50	INTRON	INTRON	GRB2	ENSG00000177885.15	ENST00000316615.9:ENST00000316804.10:ENST00000392562.5:ENST00000392564.5:ENST00000392563.5:ENST00000648046.1:ENST00000578961.5:ENST00000582582.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	23	2	3.98867	4.100465	4.21226	0.0507	0.0177403	0.156383	0.11319
chr2	25751587	25751683	1084254	0	-	0.40625	(0.378,0.408]	chr2	115877	8	INTRON	INTRON	ASXL2	ENSG00000143970.18	ENST00000435504.9:ENST00000336112.9:ENST00000404843.5:ENST00000673455.1	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	3.98867	4.100465	4.21226	0.0507	0.0177403	0.156383	0.11319
chr2	62204339	62204439	790083	0	+	0.39	(0.378,0.408]	chr2	88695	76	INTRON	INTRON	B3GNT2	ENSG00000170340.11	ENST00000301998.5	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	3.98867	4.100465	4.21226	0.0507	0.0177403	0.156383	0.11319
chr21	45422955	45423055	7419685	0	+	0.4	(0.378,0.408]	chr21	756409	171	INTRON	INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	3.98867	4.100465	4.21226	0.0507	0.0177403	0.156383	0.11319
chr3	40496335	40496434	1402223	0	+	0.40404	(0.378,0.408]	chr3	147317	54	INTRON	INTRON	ZNF620	ENSG00000177842.12	ENST00000649142.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	0	23	2	3.98867	4.100465	4.21226	0.0507	0.0177403	0.156383	0.11319
chr4	67501307	67501406	2153060	0	-	0.40404	(0.378,0.408]	chr4	211942	57	INTRON	INTRON	CENPC	ENSG00000145241.11	ENST00000273853.11:ENST00000513216.5:ENST00000506882.5:ENST00000510189.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	23	2	3.98867	4.100465	4.21226	0.0507	0.0177403	0.156383	0.11319
chr5	132921141	132921240	2724838	0	-	0.383838	(0.378,0.408]	chr5	256321	164	INTRON	INTRON	AFF4	ENSG00000072364.13	ENST00000265343.10:ENST00000378595.7:ENST00000425658.1:ENST00000378593.6:ENST00000477369.5:ENST00000491831.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	23	2	3.98867	4.100465	4.21226	0.0507	0.0177403	0.156383	0.11319
chr6	158317167	158317267	3019396	0	+	0.4	(0.378,0.408]	chr6	281697	25	INTRON	INTRON	ENSG00000274023:TULP4	ENSG00000274023.1:ENSG00000130338.13	ENST00000619713.1:ENST00000367097.8:ENST00000367094.6:ENST00000616856.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	0	23	2	3.98867	4.100465	4.21226	0.0507	0.0177403	0.156383	0.11319
chr7	138508304	138508404	3435122	0	+	0.39	(0.378,0.408]	chr7	319965	35	INTRON	INTRON	TRIM24	ENSG00000122779.18	ENST00000343526.9:ENST00000415680.6:ENST00000497516.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	23	2	3.98867	4.100465	4.21226	0.0507	0.0177403	0.156383	0.11319
chr20	49155065	49155164	7352042	0	-	0.343434	(0.32,0.35]	chr20	749666	6	INTRON	INTRON	STAU1	ENSG00000124214.21	ENST00000371856.7:ENST00000371828.7:ENST00000340954.11:ENST00000347458.9:ENST00000360426.8:ENST00000371792.5:ENST00000371802.5:ENST00000437404.2:ENST00000456866.2	protein_coding	protein_coding	protein_coding	protein_coding	3	84	2	2.2643	4.10032	5.93634	0.00712852	2.02056e-4	0.0756118	0.0129814
chr1	8559920	8560020	371199	0	-	0.38	(0.378,0.408]	chr1	43517	20	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000400907.6:ENST00000656437.1:ENST00000659924.1:ENST00000480342.5:ENST00000469251.1:ENST00000514428.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	23	2	4.09379	4.1002	4.10661	0.0399023	0.023912	0.143072	0.129075
chr12	113294005	113294105	5232293	0	+	0.39	(0.378,0.408]	chr12	496257	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	TPCN1	ENSG00000186815.13	ENST00000550785.5:ENST00000335509.11:ENST00000552077.5:ENST00000541517.5:ENST00000392569.8:ENST00000551127.5:ENST00000546787.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	23	2	4.09379	4.1002	4.10661	0.0399023	0.023912	0.143072	0.129075
chr13	42290687	42290787	5477442	0	+	0.38	(0.378,0.408]	chr13	524810	39	INTRON	INTRON	AKAP11	ENSG00000023516.9	ENST00000025301.4	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	4.09379	4.1002	4.10661	0.0399023	0.023912	0.143072	0.129075
chr13	97996543	97996641	5520940	0	+	0.387755	(0.378,0.408]	chr13	527888	30	INTRON	INTRON	IPO5	ENSG00000065150.21	ENST00000651721.2:ENST00000261574.10:ENST00000357602.7:ENST00000490680.5:ENST00000469360.5:ENST00000470493.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	23	2	4.09379	4.1002	4.10661	0.0399023	0.023912	0.143072	0.129075
chr14	50273724	50273824	5888945	0	-	0.4	(0.378,0.408]	chr14	559038	40	INTRON	INTRON	L2HGDH	ENSG00000087299.12	ENST00000261699.8:ENST00000267436.9:ENST00000421284.7	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	4.09379	4.1002	4.10661	0.0399023	0.023912	0.143072	0.129075
chr14	60929431	60929531	5738677	0	+	0.4	(0.378,0.408]	chr14	544921	492	INTRON	INTRON	MNAT1	ENSG00000020426.11	ENST00000261245.9:ENST00000539616.6:ENST00000554002.5:ENST00000557134.1	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	4.09379	4.1002	4.10661	0.0399023	0.023912	0.143072	0.129075
chr16	23435317	23435416	6463906	0	-	0.40404	(0.378,0.408]	chr16	623783	2	INTRON	INTRON	COG7	ENSG00000168434.13	ENST00000307149.10	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	4.09379	4.1002	4.10661	0.0399023	0.023912	0.143072	0.129075
chr16	87280317	87280417	6536860	0	-	0.39	(0.378,0.408]	chr16	633310	1389	INTRON	INTRON	C16orf95	ENSG00000260456.7	ENST00000562840.1	protein_coding	processed_transcript	protein_coding	processed_transcript	0	23	2	4.09379	4.1002	4.10661	0.0399023	0.023912	0.143072	0.129075
chr16	87374228	87374328	6537734	0	-	0.39	(0.378,0.408]	chr16	633434	59	INTRON	INTRON	FBXO31	ENSG00000103264.18	ENST00000311635.12:ENST00000565593.1:ENST00000618298.6:ENST00000636077.1:ENST00000569412.5:ENST00000563956.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	23	2	4.09379	4.1002	4.10661	0.0399023	0.023912	0.143072	0.129075
chr17	32213024	32213123	6597558	0	+	0.40404	(0.378,0.408]	chr17	641842	14	INTRON	INTRON	RHOT1	ENSG00000126858.19	ENST00000333942.10:ENST00000358365.7:ENST00000583994.5:ENST00000545287.7:ENST00000354266.7:ENST00000581031.5:ENST00000578205.5:ENST00000394692.6:ENST00000580392.5:ENST00000584692.1:ENST00000652713.1:ENST00000584852.1:ENST00000582586.1:ENST00000646284.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	23	2	4.09379	4.1002	4.10661	0.0399023	0.023912	0.143072	0.129075
chr17	82115358	82115458	6851445	0	-	0.39	(0.378,0.408]	chr17	678956	12	INTRON	INTRON	CCDC57	ENSG00000176155.21	ENST00000694881.1:ENST00000389641.9:ENST00000694882.1:ENST00000665763.1:ENST00000578910.2:ENST00000392345.6:ENST00000583593.2:ENST00000419322.6:ENST00000392346.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	23	2	4.09379	4.1002	4.10661	0.0399023	0.023912	0.143072	0.129075
chr18	12349355	12349450	6946853	0	-	0.389474	(0.378,0.408]	chr18	687210	6	INTRON	INTRON	AFG3L2	ENSG00000141385.12	ENST00000269143.8:ENST00000691970.1:ENST00000691179.1:ENST00000687337.1:ENST00000692988.1:ENST00000692497.1:ENST00000688199.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	23	2	4.09379	4.1002	4.10661	0.0399023	0.023912	0.143072	0.129075
chr2	44196497	44196596	764833	0	+	0.40404	(0.378,0.408]	chr2	86683	269	INTRON	INTRON	PPM1B	ENSG00000138032.21	ENST00000419807.5:ENST00000282412.9:ENST00000378540.8:ENST00000378551.6:ENST00000409432.7:ENST00000409486.6:ENST00000345249.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	23	2	4.09379	4.1002	4.10661	0.0399023	0.023912	0.143072	0.129075
chr2	75956064	75956164	817720	0	+	0.39	(0.378,0.408]	chr2	91391	832	INTRON	INTRON	ENSG00000287474	ENSG00000287474.1	ENST00000670606.1	lncRNA	lncRNA	lncRNA	lncRNA	0	23	2	4.09379	4.1002	4.10661	0.0399023	0.023912	0.143072	0.129075
chr2	237779819	237779915	1050196	0	+	0.385417	(0.378,0.408]	chr2	111693	4	UTR3	UTR3:EXON_MRNA:INTRON	LRRFIP1	ENSG00000124831.19	ENST00000308482.14:ENST00000478958.5:ENST00000489603.5:ENST00000474195.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	23	2	4.09379	4.1002	4.10661	0.0399023	0.023912	0.143072	0.129075
chr3	42020415	42020515	1403726	0	+	0.38	(0.378,0.408]	chr3	147497	59	INTRON	INTRON	TRAK1	ENSG00000182606.17	ENST00000487159.5:ENST00000672026.1:ENST00000673621.2	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	4.09379	4.1002	4.10661	0.0399023	0.023912	0.143072	0.129075
chr3	50012111	50012211	1423681	0	+	0.4	(0.378,0.408]	chr3	149994	122	INTRON	INTRON	RBM6	ENSG00000004534.15	ENST00000442092.5:ENST00000443081.5:ENST00000419610.5:ENST00000441115.5:ENST00000422955.5:ENST00000454079.5:ENST00000266022.9:ENST00000425608.5:ENST00000434592.5:ENST00000464013.5:ENST00000483350.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	23	2	4.09379	4.1002	4.10661	0.0399023	0.023912	0.143072	0.129075
chr3	51462413	51462513	1696900	0	-	0.39	(0.378,0.408]	chr3	174398	182	INTRON	INTRON	DCAF1	ENSG00000145041.16	ENST00000504652.5:ENST00000423656.5:ENST00000684031.1:ENST00000335891.5	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	4.09379	4.1002	4.10661	0.0399023	0.023912	0.143072	0.129075
chr4	183645053	183645153	2303173	0	-	0.4	(0.378,0.408]	chr4	222690	32	INTRON	INTRON	RWDD4	ENSG00000182552.15	ENST00000326397.10:ENST00000327570.13:ENST00000510968.5:ENST00000510702.5:ENST00000512740.1:ENST00000514322.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	23	2	4.09379	4.1002	4.10661	0.0399023	0.023912	0.143072	0.129075
chr5	77729313	77729413	2646764	0	-	0.39	(0.378,0.408]	chr5	251578	141	INTRON	INTRON	TBCA	ENSG00000171530.15	ENST00000380377.9:ENST00000306388.10:ENST00000520361.5:ENST00000651106.1:ENST00000518338.6:ENST00000522370.1:ENST00000520039.1	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	4.09379	4.1002	4.10661	0.0399023	0.023912	0.143072	0.129075
chr5	108072674	108072774	2698498	0	-	0.38	(0.378,0.408]	chr5	254269	513	INTRON	INTRON	FBXL17	ENSG00000145743.18	ENST00000542267.7:ENST00000496714.2:ENST00000481160.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	23	2	4.09379	4.1002	4.10661	0.0399023	0.023912	0.143072	0.129075
chr6	152977704	152977803	3249622	0	-	0.393939	(0.378,0.408]	chr6	301947	17	INTRON	INTRON	FBXO5	ENSG00000112029.10	ENST00000367241.3:ENST00000229758.8	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	4.09379	4.1002	4.10661	0.0399023	0.023912	0.143072	0.129075
chr7	133662030	133662130	3422271	0	+	0.39	(0.378,0.408]	chr7	319395	315	INTRON	INTRON	EXOC4	ENSG00000131558.15	ENST00000253861.5:ENST00000479839.6:ENST00000483800.5:ENST00000469115.5:ENST00000489931.5:ENST00000482089.5:ENST00000460346.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	23	2	4.09379	4.1002	4.10661	0.0399023	0.023912	0.143072	0.129075
chr2	87509327	87509427	826468	0	+	0.37	(0.35,0.378]	chr2	92444	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	CYTOR:ENSG00000284879	ENSG00000222041.12:ENSG00000284879.1	ENST00000642796.1:ENST00000643589.1:ENST00000642451.1:ENST00000646386.1:ENST00000644478.1:ENST00000409139.6:ENST00000331944.10:ENST00000644125.1:ENST00000643743.1:ENST00000644577.1:ENST00000643276.1:ENST00000409898.2:ENST00000419680.6:ENST00000644976.1:ENST00000643070.1:ENST00000646855.1:ENST00000414584.1:ENST00000455131.5:ENST00000646636.1:ENST00000642293.1:ENST00000423846.5:ENST00000644040.1:ENST00000645138.1:ENST00000437561.2:ENST00000629257.1:ENST00000645729.1:ENST00000413202.1	lncRNA	lncRNA	lncRNA	lncRNA	2	76	2	2.88445	4.1000049999999995	5.31556	0.00212567	4.97087e-4	0.041756	0.0201536
chrX	136878833	136878916	7897674	0	-	0.385542	(0.378,0.408]	chrX	804175	4	SS5_PROX	SS5_PROX:INTRON	RBMX	ENSG00000147274.14	ENST00000431446.7:ENST00000568578.5:ENST00000419968.6:ENST00000464781.5:ENST00000320676.11:ENST00000562646.5:ENST00000565438.1:ENST00000567262.5:ENST00000563370.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	53	2	3.14892	4.099915	5.05091	0.00499984	0.00118558	0.0617433	0.031662
chr3	129398907	129399007	1815516	0	-	0.6	(0.57,1]	chr3	182524	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	RPL32P3	ENSG00000251474.7	ENST00000510078.5:ENST00000687239.1:ENST00000514355.5:ENST00000515866.5:ENST00000499631.2:ENST00000506593.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	1	34	2	3.82801	4.099685	4.37136	0.00345135	9.41714e-5	0.0517761	0.00813008
chr4	128813371	128813471	2044302	0	+	0.38	(0.378,0.408]	chr4	202988	10	INTRON	INTRON	JADE1	ENSG00000077684.16	ENST00000226319.11:ENST00000511647.5:ENST00000452328.6:ENST00000504089.5:ENST00000512960.5:ENST00000503785.5:ENST00000514740.1:ENST00000610919.4:ENST00000510308.5:ENST00000511925.5:ENST00000413543.6:ENST00000611140.4:ENST00000507833.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	89	2	2.66588	4.099435	5.53299	0.00156732	1.47095e-4	0.0360728	0.0105341
chr1	45612102	45612199	93493	0	+	0.556701	(0.515,0.57]	chr1	12614	17	EXON_MRNA	EXON_MRNA:INTRON	NASP	ENSG00000132780.17	ENST00000437901.6:ENST00000537798.5:ENST00000437362.6:ENST00000350030.8:ENST00000527359.5:ENST00000453748.5:ENST00000525515.5:ENST00000528238.5:ENST00000372052.8:ENST00000351223.7:ENST00000530073.5:ENST00000481782.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	79	2	2.31394	4.099425	5.88491	0.00231716	2.75856e-5	0.0442594	0.00430942
chr8	140681263	140681363	4076817	0	-	0.52	(0.515,0.57]	chr8	370338	54	INTRON	INTRON	PTK2	ENSG00000169398.20	ENST00000696786.1:ENST00000522684.5:ENST00000395218.3:ENST00000519654.5:ENST00000521059.5:ENST00000517887.5:ENST00000519465.5:ENST00000519993.5:ENST00000340930.7:ENST00000523539.5:ENST00000519419.5:ENST00000524202.5:ENST00000430260.6:ENST00000521986.5:ENST00000523805.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	46	2	3.2024	4.099375	4.99635	0.00322022	8.06602e-4	0.0507087	0.0258804
chr19	17241955	17242054	7151195	0	-	0.474747	(0.44,0.476]	chr19	722569	8	INTRON	INTRON	NR2F6	ENSG00000160113.6	ENST00000291442.4:ENST00000596878.1	protein_coding	protein_coding	protein_coding	protein_coding	1	50	2	2.66433	4.09936	5.53439	0.0194358	4.05863e-4	0.119831	0.0185763
chr5	38943755	38943850	2604294	0	-	0.452632	(0.44,0.476]	chr5	247711	4	INTRON	INTRON	RICTOR	ENSG00000164327.13	ENST00000357387.8:ENST00000511516.5:ENST00000296782.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	50	2	2.66433	4.09936	5.53439	0.0194358	4.05863e-4	0.119831	0.0185763
chr3	33637666	33637766	1653190	0	-	0.36	(0.35,0.378]	chr3	169635	49	INTRON	INTRON	CLASP2	ENSG00000163539.18	ENST00000399362.8:ENST00000682230.1:ENST00000468888.6:ENST00000359576.9:ENST00000650653.1:ENST00000480013.6:ENST00000461133.8:ENST00000635664.1:ENST00000313350.10:ENST00000487200.5:ENST00000333778.10:ENST00000485378.6:ENST00000496954.2:ENST00000476433.5:ENST00000482896.5:ENST00000498331.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	54	2	2.78212	4.099135	5.41615	0.0168532	3.21724e-4	0.103549	0.0159645
chr7	135955829	135955929	3649257	0	-	0.31	(0.28,0.32]	chr7	339214	38	INTRON	INTRON	MTPN	ENSG00000105887.11	ENST00000393085.4:ENST00000435723.1	protein_coding	protein_coding	protein_coding	protein_coding	3	89	2	2.56291	4.098875	5.63484	0.00227849	0.00108324	0.0437013	0.0303015
chr9	133055771	133055858	4219364	0	+	0.609195	(0.57,1]	chr9	387170	4	SS3_PROX	SS3_PROX:INTRON	GTF3C5	ENSG00000148308.18	ENST00000372099.10:ENST00000372097.10:ENST00000342018.12:ENST00000372108.9	protein_coding	protein_coding	protein_coding	protein_coding	4	61	2	2.85199	4.098305	5.34462	9.50812e-5	2.48598e-5	0.0086994	0.00391773
chr2	68251338	68251433	1146513	0	-	0.431579	(0.408,0.44]	chr2	122400	3	INTRON	INTRON	PPP3R1	ENSG00000221823.11	ENST00000234310.8:ENST00000409752.5	protein_coding	protein_coding	protein_coding	protein_coding	3	83	2	2.1226	4.098115	6.07363	0.012812	7.09547e-6	0.0926667	0.00188852
chr1	99723920	99724019	514901	0	-	0.343434	(0.32,0.35]	chr1	60364	39	INTRON	INTRON	FRRS1	ENSG00000156869.14	ENST00000646001.2:ENST00000287474.9	protein_coding	protein_coding	protein_coding	protein_coding	2	78	2	3.36317	4.09802	4.83287	0.0095071	1.69213e-4	0.0817766	0.0112853
chr1	235267248	235267348	663253	0	-	0.34	(0.32,0.35]	chr1	78552	61	INTRON	INTRON	ARID4B	ENSG00000054267.22	ENST00000349213.7:ENST00000366603.6:ENST00000264183.9:ENST00000421364.5:ENST00000491632.5:ENST00000418304.1:ENST00000466653.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	78	2	3.36317	4.09802	4.83287	0.0095071	1.69213e-4	0.0817766	0.0112853
chr3	15766612	15766712	1623506	0	-	0.43	(0.408,0.44]	chr3	168008	3	SS3_PROX	SS3_PROX:INTRON	ANKRD28	ENSG00000206560.12	ENST00000399451.6:ENST00000624145.3:ENST00000683139.1:ENST00000412318.5:ENST00000497037.5:ENST00000451422.1:ENST00000498524.5:ENST00000439830.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	51	2	2.89795	4.09787	5.29779	0.0110735	3.80479e-4	0.0873897	0.0176313
chr17	27478068	27478167	6580982	0	+	0.424242	(0.408,0.44]	chr17	639659	56	INTRON	INTRON	KSR1	ENSG00000141068.15	ENST00000644974.2:ENST00000579309.1:ENST00000583370.5:ENST00000398988.7:ENST00000268763.10:ENST00000509603.6:ENST00000582311.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	51	2	2.95296	4.097815000000001	5.24267	0.00929354	4.83767e-4	0.0817766	0.0199261
chr17	28721759	28721852	6584859	0	+	0.451613	(0.44,0.476]	chr17	640195	5	INTRON	INTRON	RPL23A	ENSG00000198242.14	ENST00000422514.7:ENST00000496182.5:ENST00000394938.8:ENST00000394935.7:ENST00000355731.8:ENST00000472628.1:ENST00000578181.1	protein_coding	protein_coding	protein_coding	protein_coding	3	78	2	2.12992	4.09756	6.0652	0.010975	3.50238e-5	0.092635	0.00499276
chr2	55386177	55386277	1124054	0	-	0.42	(0.408,0.44]	chr2	120560	109	INTRON	INTRON	CCDC88A	ENSG00000115355.18	ENST00000263630.13:ENST00000436346.7:ENST00000336838.10:ENST00000642200.1:ENST00000413716.7:ENST00000643413.1:ENST00000647401.1:ENST00000645311.1:ENST00000646796.1:ENST00000645571.1:ENST00000645477.1:ENST00000645072.1:ENST00000644890.1:ENST00000644630.1:ENST00000647098.1:ENST00000646324.1:ENST00000642890.1:ENST00000647517.1:ENST00000645031.1:ENST00000645484.1:ENST00000645529.1:ENST00000644033.1:ENST00000644193.1:ENST00000645168.1:ENST00000647341.1:ENST00000430086.1:ENST00000644127.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	51	2	3.67886	4.09745	4.51604	0.0137419	3.86173e-4	0.0949306	0.017761
chr1	213193162	213193262	312129	0	+	0.31	(0.28,0.32]	chr1	35957	163	INTRON	INTRON	RPS6KC1	ENSG00000136643.12	ENST00000615329.4:ENST00000543354.5:ENST00000614059.4:ENST00000543470.5:ENST00000366960.8:ENST00000366959.4:ENST00000490299.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	74	2	2.84671	4.09718	5.34765	0.00287138	0.00216662	0.0474836	0.0434015
chr15	48775123	48775222	6166317	0	-	0.353535	(0.35,0.378]	chr15	587640	17	INTRON	INTRON	CEP152	ENSG00000103995.14	ENST00000380950.7:ENST00000399334.7:ENST00000325747.9:ENST00000560322.5	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay	0	24	2	3.80129	4.097160000000001	4.39303	0.0504034	0.0237246	0.17488	0.118716
chr15	49149952	49150052	6167772	0	-	0.36	(0.35,0.378]	chr15	587899	45	INTRON	INTRON	COPS2	ENSG00000166200.15	ENST00000388901.10:ENST00000299259.10:ENST00000542928.5:ENST00000558843.5:ENST00000561248.1:ENST00000558545.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	24	2	3.80129	4.097160000000001	4.39303	0.0504034	0.0237246	0.17488	0.118716
chr15	67565142	67565241	6053491	0	+	0.373737	(0.35,0.378]	chr15	576385	14	INTRON	INTRON	MAP2K5	ENSG00000137764.20	ENST00000178640.10:ENST00000560591.5:ENST00000395476.6:ENST00000354498.9:ENST00000439036.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	24	2	3.80129	4.097160000000001	4.39303	0.0504034	0.0237246	0.17488	0.118716
chr17	77357496	77357596	6680209	0	+	0.36	(0.35,0.378]	chr17	652501	333	INTRON	INTRON	SEPTIN9	ENSG00000184640.20	ENST00000589070.1:ENST00000591833.5:ENST00000591198.5:ENST00000427177.6:ENST00000590576.5:ENST00000431235.6:ENST00000449803.6:ENST00000587237.1:ENST00000329047.13:ENST00000588575.1:ENST00000590595.1:ENST00000590294.6:ENST00000591934.1:ENST00000588690.6:ENST00000592098.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	24	2	3.80129	4.097160000000001	4.39303	0.0504034	0.0237246	0.17488	0.118716
chr3	11314381	11314473	1364819	0	+	0.369565	(0.35,0.378]	chr3	143866	6	INTRON	INTRON	ATG7	ENSG00000197548.13	ENST00000451830.5:ENST00000693202.1:ENST00000435760.6:ENST00000685771.1:ENST00000418682.5:ENST00000354449.7:ENST00000354956.9:ENST00000446450.6:ENST00000488924.5:ENST00000424071.5:ENST00000434066.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	24	2	3.80129	4.097160000000001	4.39303	0.0504034	0.0237246	0.17488	0.118716
chr3	14162121	14162221	1619001	0	-	0.37	(0.35,0.378]	chr3	167323	19	INTRON	INTRON	XPC	ENSG00000154767.15	ENST00000285021.12:ENST00000476581.6:ENST00000477324.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	24	2	3.80129	4.097160000000001	4.39303	0.0504034	0.0237246	0.17488	0.118716
chr6	88904214	88904314	3158542	0	-	0.37	(0.35,0.378]	chr6	294228	1	SS5_PROX	SS5_PROX:INTRON	RNGTT	ENSG00000111880.16	ENST00000369485.9:ENST00000369475.7:ENST00000627296.1:ENST00000538899.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	24	2	3.80129	4.097160000000001	4.39303	0.0504034	0.0237246	0.17488	0.118716
chr7	75921251	75921351	3338956	0	+	0.37	(0.35,0.378]	chr7	310882	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	POR	ENSG00000127948.16	ENST00000453773.5:ENST00000439963.5:ENST00000448410.5:ENST00000461988.6:ENST00000471238.5:ENST00000421059.1:ENST00000394893.5:ENST00000412521.5:ENST00000414186.5:ENST00000432753.5:ENST00000449920.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	24	2	3.80129	4.097160000000001	4.39303	0.0504034	0.0237246	0.17488	0.118716
chr7	76625221	76625321	3562701	0	-	0.36	(0.35,0.378]	chr7	331970	3	SS5_PROX	SS5_PROX:INTRON	POMZP3	ENSG00000146707.15	ENST00000310842.9:ENST00000275569.8:ENST00000424818.5:ENST00000454397.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	24	2	3.80129	4.097160000000001	4.39303	0.0504034	0.0237246	0.17488	0.118716
chr7	111549564	111549664	3623987	0	-	0.37	(0.35,0.378]	chr7	337133	166	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000452895.5:ENST00000447215.5:ENST00000492938.1:ENST00000452753.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	24	2	3.80129	4.097160000000001	4.39303	0.0504034	0.0237246	0.17488	0.118716
chr8	119848442	119848538	4040222	0	-	0.364583	(0.35,0.378]	chr8	368448	10	INTRON	INTRON	DSCC1	ENSG00000136982.6	ENST00000313655.5	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	3.80129	4.097160000000001	4.39303	0.0504034	0.0237246	0.17488	0.118716
chrX	3864229	3864313	7747230	0	-	0.357143	(0.35,0.378]	chrX	793120	2	INTRON	INTRON	ENSG00000285756	ENSG00000285756.2	ENST00000648217.1:ENST00000650456.1:ENST00000657698.1:ENST00000661656.1:ENST00000661924.1:ENST00000669719.1:ENST00000655273.1:ENST00000456563.1:ENST00000650538.1	lncRNA	lncRNA	lncRNA	lncRNA	0	24	2	3.80129	4.097160000000001	4.39303	0.0504034	0.0237246	0.17488	0.118716
chr15	89295691	89295788	6096276	0	+	0.42268	(0.408,0.44]	chr15	580203	2	INTRON	INTRON	FANCI	ENSG00000140525.20	ENST00000674831.1:ENST00000300027.12:ENST00000310775.12:ENST00000696717.1:ENST00000676003.1:ENST00000696718.1:ENST00000447611.6:ENST00000696719.1:ENST00000565522.5:ENST00000561894.1:ENST00000566895.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	167	2	3.64657	4.097065	4.54756	6.64901e-6	3.48759e-6	0.00194394	0.00120947
chr6	167897626	167897704	3035055	0	+	0.346154	(0.32,0.35]	chr6	282767	3	INTRON	INTRON	AFDN	ENSG00000130396.21	ENST00000683244.1:ENST00000351017.9:ENST00000344191.8:ENST00000392112.5:ENST00000392108.7:ENST00000400822.7:ENST00000447894.6:ENST00000366809.6:ENST00000366806.6:ENST00000423229.1:ENST00000503021.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	162	2	4.04708	4.09698	4.14688	9.76776e-5	3.08986e-6	0.00889684	0.00113571
chr18	804424	804524	6940628	0	-	0.48	(0.476,0.515]	chr18	686527	64	INTRON	INTRON	YES1	ENSG00000176105.14	ENST00000584307.5:ENST00000314574.5:ENST00000577611.1:ENST00000581960.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	51	2	2.56868	4.09695	5.62522	0.0256676	2.4907e-4	0.133676	0.0145812
chr1	2192474	2192569	362931	0	-	0.557895	(0.515,0.57]	chr1	42339	7	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	FAAP20	ENSG00000162585.17	ENST00000400919.7:ENST00000469733.5:ENST00000414253.5:ENST00000428120.5:ENST00000400918.7:ENST00000497675.2:ENST00000487186.5:ENST00000401813.7:ENST00000378546.9:ENST00000378543.2:ENST00000476803.1:ENST00000440825.6:ENST00000420515.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	103	2	1.88214	4.09683	6.31152	0.00447641	2.37911e-6	0.0610799	0.00107133
chr16	29452393	29452489	6470064	0	-	0.427083	(0.408,0.44]	chr16	625075	4	UTR3	UTR3:EXON_MRNA:INTRON	ENSG00000288632:BOLA2-SMG1P6	ENSG00000288632.1:ENSG00000261740.7	ENST00000675579.1:ENST00000569622.6:ENST00000565417.6:ENST00000568556.2:ENST00000380596.10	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:nonsense_mediated_decay:lncRNA	1	50	2	2.66579	4.096685	5.52758	0.019342	4.54953e-4	0.119831	0.0196892
chr9	133031264	133031364	4219104	0	+	0.44	(0.408,0.44]	chr9	387122	1	SS5_PROX	SS5_PROX:INTRON	GTF3C5	ENSG00000148308.18	ENST00000372099.10:ENST00000440319.5:ENST00000372097.10:ENST00000342018.12:ENST00000372108.9:ENST00000439697.1:ENST00000485692.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	50	2	2.66579	4.096685	5.52758	0.019342	4.54953e-4	0.119831	0.0196892
chr16	4468251	4468346	6437554	0	-	0.484211	(0.476,0.515]	chr16	619892	7	INTRON	INTRON	NMRAL1	ENSG00000153406.14	ENST00000574733.5:ENST00000283429.11:ENST00000404295.7:ENST00000574425.5:ENST00000576176.1:ENST00000571291.5:ENST00000572391.1:ENST00000573520.5:ENST00000573571.1:ENST00000575002.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	51	2	3.19975	4.096585	4.99342	0.00383299	0.00139274	0.0542786	0.0341261
chr14	73059410	73059509	5784087	0	+	0.363636	(0.35,0.378]	chr14	547808	2	INTRON	INTRON	RBM25	ENSG00000119707.14	ENST00000527432.5:ENST00000531500.5:ENST00000261973.12:ENST00000532683.5:ENST00000525321.5:ENST00000526754.5:ENST00000525161.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	58	2	3.44435	4.096475	4.7486	0.00418965	0.00179102	0.0591344	0.0380316
chr5	1615408	1615508	2566114	0	-	0.43	(0.408,0.44]	chr5	245807	123	INTRON	INTRON	PDCD6P1	ENSG00000188002.11	ENST00000507841.5:ENST00000512335.5:ENST00000692393.1:ENST00000507290.5:ENST00000690809.1:ENST00000688433.1:ENST00000507505.5:ENST00000691115.1:ENST00000502273.7:ENST00000522848.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	3	76	2	2.46587	4.09643	5.72699	0.00280622	1.93446e-4	0.0488779	0.0127226
chr11	62864248	62864347	4799409	0	+	0.373737	(0.35,0.378]	chr11	444781	74	INTRON	INTRON	SLC3A2	ENSG00000168003.18	ENST00000680729.1:ENST00000680002.1:ENST00000681467.1:ENST00000377890.6:ENST00000538084.2:ENST00000681569.1:ENST00000680725.1:ENST00000377891.6:ENST00000377889.6:ENST00000681215.1:ENST00000535296.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	153	2	3.68663	4.096405	4.50618	4.88378e-5	4.64451e-6	0.00606638	0.00144728
chr17	82817428	82817528	6694868	0	+	0.49	(0.476,0.515]	chr17	654903	21	INTRON	INTRON	TBCD	ENSG00000141556.22	ENST00000682479.1:ENST00000682722.1:ENST00000684464.1:ENST00000684544.1:ENST00000681983.1:ENST00000684361.1:ENST00000683184.1:ENST00000683282.1:ENST00000684408.1:ENST00000355528.9:ENST00000683444.1:ENST00000684776.1:ENST00000683041.1:ENST00000684760.1:ENST00000684349.1:ENST00000682213.1:ENST00000683009.1:ENST00000682921.1:ENST00000539345.6:ENST00000684000.1:ENST00000684188.1:ENST00000684429.1:ENST00000682610.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	76	2	2.45107	4.09631	5.74155	0.00301722	1.47804e-4	0.0507519	0.0111067
chr6	13482717	13482816	3058255	0	-	0.343434	(0.32,0.35]	chr6	284462	108	INTRON	INTRON	GFOD1	ENSG00000145990.11	ENST00000379287.4:ENST00000612338.4:ENST00000603223.1:ENST00000379278.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	52	2	2.90786	4.09618	5.2845	0.00993008	0.00240071	0.0877296	0.0440612
chr1	29069488	29069585	60529	0	+	0.226804	[0,0.28]	chr1	7745	3	UTR3	UTR3:EXON_MRNA:INTRON	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000647918.1:ENST00000646800.1:ENST00000644342.1:ENST00000646189.1:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000373798.5:ENST00000644600.1:ENST00000649674.1:ENST00000643173.1:ENST00000343067.9:ENST00000644780.1:ENST00000650265.1:ENST00000643604.1:ENST00000349460.9:ENST00000645111.1:ENST00000643302.1:ENST00000636666.1:ENST00000644848.1:ENST00000644470.1:ENST00000646871.1:ENST00000488277.1:ENST00000490308.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	209	2	3.86401	4.09612	4.32823	6.37628e-4	1.36657e-6	0.0231685	6.88985e-4
chr4	78810966	78811065	1981731	0	+	0.292929	(0.28,0.32]	chr4	198463	339	INTRON	INTRON	BMP2K	ENSG00000138756.19	ENST00000389010.7:ENST00000502613.3:ENST00000502871.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	73	2	2.63379	4.09612	5.55845	0.00503861	0.00141854	0.0646039	0.0340865
chr7	75461209	75461309	3558679	0	-	0.32	(0.28,0.32]	chr7	331545	186	INTRON	INTRON	POM121C	ENSG00000272391.6	ENST00000615331.5:ENST00000398379.2	protein_coding	protein_coding	protein_coding	protein_coding	2	73	2	2.59504	4.096095	5.59715	0.00582473	0.00123856	0.0687439	0.0322669
chr22	23265101	23265198	7484058	0	+	0.412371	(0.408,0.44]	chr22	763569	2	INTRON	INTRON	BCR	ENSG00000186716.21	ENST00000359540.7:ENST00000305877.13:ENST00000427791.1	protein_coding	protein_coding	protein_coding	protein_coding	1	55	2	3.48793	4.096015	4.7041	0.00381677	0.00130904	0.0562562	0.0331539
chr3	100311432	100311532	1466090	0	+	0.33	(0.32,0.35]	chr3	153670	2	SS3_PROX	SS3_PROX:INTRON	TBC1D23	ENSG00000036054.13	ENST00000394144.9:ENST00000344949.9:ENST00000486274.5:ENST00000475134.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	70	2	2.85974	4.09596	5.33218	0.00204346	0.00186579	0.04086	0.0399675
chr16	47483038	47483138	6343519	0	+	0.48	(0.476,0.515]	chr16	608849	187	INTRON	INTRON	PHKB	ENSG00000102893.17	ENST00000566037.6:ENST00000566044.5:ENST00000299167.12:ENST00000696809.1:ENST00000323584.10:ENST00000565424.2:ENST00000567402.5:ENST00000563376.5:ENST00000564873.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	87	2	2.34237	4.095784999999999	5.8492	0.00223831	8.94204e-5	0.0435144	0.00844245
chr4	16218050	16218149	2115734	0	-	0.353535	(0.35,0.378]	chr4	208998	20	INTRON	INTRON	TAPT1	ENSG00000169762.17	ENST00000405303.7:ENST00000505603.5:ENST00000513359.5:ENST00000510868.5:ENST00000505317.1:ENST00000511156.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	50	2	3.26794	4.095745	4.92355	0.00573514	0.00257067	0.0657377	0.0466761
chr8	17267658	17267757	3707359	0	+	0.373737	(0.35,0.378]	chr8	343735	13	INTRON	INTRON	VPS37A	ENSG00000155975.10	ENST00000519381.1:ENST00000520140.5:ENST00000518038.1:ENST00000324849.9:ENST00000425020.6:ENST00000521829.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	50	2	3.26794	4.095745	4.92355	0.00573514	0.00257067	0.0657377	0.0466761
chr1	15687511	15687611	34044	0	+	0.44	(0.408,0.44]	chr1	4144	25	INTRON	INTRON	PLEKHM2	ENSG00000116786.13	ENST00000375799.8:ENST00000375793.2:ENST00000462455.1:ENST00000642363.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	51	2	3.00595	4.095655	5.18536	0.00781452	6.17381e-4	0.0759016	0.0223951
chr12	93434262	93434361	5388162	0	-	0.434343	(0.408,0.44]	chr12	513727	95	INTRON	INTRON	UBE2N	ENSG00000177889.10	ENST00000318066.7:ENST00000550657.1:ENST00000549833.1:ENST00000549490.1:ENST00000552442.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	98	2	2.43321	4.095129999999999	5.75705	0.0019051	4.13252e-5	0.0394485	0.00519938
chr18	173009	173109	6854972	0	+	0.3	(0.28,0.32]	chr18	679508	58	INTRON	INTRON	USP14	ENSG00000101557.15	ENST00000582707.5:ENST00000400266.7:ENST00000261601.8:ENST00000578942.5:ENST00000383589.6:ENST00000583119.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	73	2	2.67153	4.095105	5.51868	0.00436402	0.00162747	0.060356	0.0367966
chrX	124054841	124054939	7717699	0	+	0.5	(0.476,0.515]	chrX	789547	31	INTRON	INTRON	STAG2	ENSG00000101972.20	ENST00000218089.13:ENST00000455404.5:ENST00000483575.5:ENST00000687810.1:ENST00000687071.1:ENST00000469481.1:ENST00000371160.5:ENST00000687852.1:ENST00000371145.8:ENST00000692982.1:ENST00000371157.7:ENST00000691035.1:ENST00000686802.1:ENST00000691383.1:ENST00000686127.1:ENST00000371144.7:ENST00000466748.5:ENST00000471107.1:ENST00000693144.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	48	2	3.35059	4.095105	4.83962	0.00480934	0.00171515	0.0602209	0.0381936
chr11	70357445	70357544	4821313	0	+	0.292929	(0.28,0.32]	chr11	449526	8	INTRON	INTRON	PPFIA1	ENSG00000131626.19	ENST00000253925.12:ENST00000389547.7:ENST00000532504.5:ENST00000648755.1:ENST00000644155.1:ENST00000526262.5:ENST00000528750.1:ENST00000530390.5:ENST00000527612.1:ENST00000638133.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	78	2	3.14383	4.09481	5.04579	0.00714672	5.83228e-4	0.0723634	0.0219397
chr1	109424925	109425025	521297	0	-	0.58	(0.57,1]	chr1	61262	2	SS5_PROX	SS5_PROX:INTRON	PSMA5	ENSG00000143106.13	ENST00000271308.9:ENST00000490870.5:ENST00000538610.5:ENST00000484563.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	33	2	2.91889	4.09478	5.27067	0.00719009	5.68536e-5	0.0756118	0.00655354
chr4	143364828	143364927	2054353	0	+	0.393939	(0.378,0.408]	chr4	203721	209	INTRON	INTRON	GAB1	ENSG00000109458.9	ENST00000262995.8:ENST00000262994.9:ENST00000514639.5	protein_coding	protein_coding	protein_coding	protein_coding	1	49	2	3.3797	4.09469	4.80968	0.00679828	0.00154501	0.0711802	0.0362716
chr12	132677951	132678040	5449091	0	-	0.505618	(0.476,0.515]	chr12	521851	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	POLE	ENSG00000177084.18	ENST00000320574.10:ENST00000672742.1:ENST00000537064.5:ENST00000535270.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	64	2	2.48551	4.09466	5.70381	0.00756632	1.75496e-4	0.0773151	0.01216
chr6	166328275	166328357	3262974	0	-	0.353659	(0.35,0.378]	chr6	302928	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SFT2D1	ENSG00000198818.10	ENST00000361731.4:ENST00000487841.5:ENST00000478705.5:ENST00000488773.1:ENST00000494682.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	54	2	2.72497	4.094455	5.46394	0.0198266	2.60035e-4	0.109608	0.014326
chr11	3689165	3689264	4894055	0	-	0.525253	(0.515,0.57]	chr11	458757	26	INTRON	INTRON	NUP98	ENSG00000110713.17	ENST00000359171.8:ENST00000324932.12:ENST00000650171.1:ENST00000355260.7:ENST00000429801.5:ENST00000524563.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	44	2	3.42644	4.09444	4.76244	0.00362147	0.00106731	0.0533855	0.0300133
chr9	105694660	105694760	4182538	0	+	0.53	(0.515,0.57]	chr9	381479	1	CDS_START	CDS_START:CDS:UTR5:EXON_MRNA	TMEM38B	ENSG00000095209.12	ENST00000374692.8:ENST00000434214.1	protein_coding	protein_coding	protein_coding	protein_coding	1	44	2	3.42644	4.09444	4.76244	0.00362147	0.00106731	0.0533855	0.0300133
chr5	149504757	149504845	2750600	0	-	0.25	[0,0.28]	chr5	259006	2	INTRON	INTRON	CSNK1A1	ENSG00000113712.19	ENST00000261798.10:ENST00000377843.8:ENST00000657001.1:ENST00000515768.6:ENST00000606719.6:ENST00000657462.1:ENST00000661952.1:ENST00000504676.5:ENST00000515435.5:ENST00000662268.1:ENST00000657706.1:ENST00000606826.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	147	2	3.86401	4.09422	4.32443	6.37628e-4	3.46792e-5	0.0231685	0.00469264
chr9	7062467	7062567	4103228	0	+	0.42	(0.408,0.44]	chr9	373774	129	INTRON	INTRON	KDM4C	ENSG00000107077.19	ENST00000536108.5:ENST00000381306.7:ENST00000381309.8:ENST00000543771.5:ENST00000428870.6:ENST00000420847.2:ENST00000495890.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	48	2	2.89193	4.094025	5.29612	0.00950364	0.00113523	0.0863579	0.0307488
chr19	43737096	43737196	7188015	0	-	0.51	(0.476,0.515]	chr19	727546	1	SS5_PROX	SS5_PROX:INTRON	SMG9	ENSG00000105771.14	ENST00000270066.11:ENST00000601170.5:ENST00000597598.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	52	2	3.33416	4.093975	4.85379	0.00234214	0.00230489	0.0442989	0.0428247
chr16	18398425	18398523	6455041	0	-	0.520408	(0.515,0.57]	chr16	622259	21	INTRON	INTRON	PKD1P5	ENSG00000254681.6	ENST00000532415.5:ENST00000544578.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	1	44	2	2.9114	4.093955	5.27651	0.00826019	5.11033e-4	0.0813266	0.020816
chr10	34662869	34662969	4598768	0	-	0.34	(0.32,0.35]	chr10	423718	1454	INTRON	INTRON	PARD3	ENSG00000148498.17	ENST00000545260.5:ENST00000545693.5:ENST00000346874.9:ENST00000350537.9:ENST00000374788.8:ENST00000374789.8:ENST00000374790.8:ENST00000374794.8:ENST00000696673.1:ENST00000374776.6:ENST00000340077.9:ENST00000374773.6	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	3.91486	4.09393	4.273	0.0450361	0.0368357	0.163255	0.138959
chr11	58621155	58621254	4794175	0	+	0.323232	(0.32,0.35]	chr11	443881	36	UTR3	UTR3:EXON_MRNA	ZFP91	ENSG00000186660.15	ENST00000316059.7	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	3.91486	4.09393	4.273	0.0450361	0.0368357	0.163255	0.138959
chr14	64507213	64507311	5751538	0	+	0.336735	(0.32,0.35]	chr14	546351	19	INTRON	INTRON	ZBTB1	ENSG00000126804.14	ENST00000553583.1:ENST00000556965.1:ENST00000554015.5:ENST00000358738.3:ENST00000555321.1:ENST00000683701.1	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	3.91486	4.09393	4.273	0.0450361	0.0368357	0.163255	0.138959
chr14	72932860	72932958	5783785	0	+	0.346939	(0.32,0.35]	chr14	547716	27	INTRON	INTRON	DCAF4	ENSG00000119599.17	ENST00000353777.7:ENST00000509320.5:ENST00000358377.7:ENST00000394234.6:ENST00000509153.5:ENST00000555042.5:ENST00000514191.5:ENST00000505361.5:ENST00000510612.5:ENST00000508412.5:ENST00000514486.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	24	2	3.91486	4.09393	4.273	0.0450361	0.0368357	0.163255	0.138959
chr15	44597775	44597872	6164087	0	-	0.340206	(0.32,0.35]	chr15	587308	5	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	SPG11	ENSG00000104133.16	ENST00000684235.1:ENST00000261866.12:ENST00000559511.6:ENST00000682065.1:ENST00000682669.1:ENST00000683496.1:ENST00000682460.1:ENST00000682495.1:ENST00000684038.1:ENST00000683186.1:ENST00000683734.1:ENST00000683753.1:ENST00000535302.6:ENST00000427534.6:ENST00000558319.5:ENST00000684676.1:ENST00000682788.1:ENST00000683121.1:ENST00000558561.1:ENST00000683838.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	24	2	3.91486	4.09393	4.273	0.0450361	0.0368357	0.163255	0.138959
chr2	15267483	15267583	1070181	0	-	0.35	(0.32,0.35]	chr2	114227	284	INTRON	INTRON	NBAS	ENSG00000151779.13	ENST00000281513.10:ENST00000442506.5	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	3.91486	4.09393	4.273	0.0450361	0.0368357	0.163255	0.138959
chr20	31561133	31561233	7253458	0	+	0.34	(0.32,0.35]	chr20	736666	1	SS3_PROX	SS3_PROX:INTRON	HM13	ENSG00000101294.18	ENST00000335574.10:ENST00000674240.1:ENST00000340852.9:ENST00000398174.9:ENST00000649820.1:ENST00000466766.2:ENST00000650367.1:ENST00000344042.5:ENST00000649374.1:ENST00000469126.5:ENST00000492709.5:ENST00000469097.5:ENST00000487964.5:ENST00000649583.1:ENST00000460389.5:ENST00000494153.5:ENST00000483310.5:ENST00000472128.5:ENST00000474466.5:ENST00000468559.5:ENST00000619859.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	24	2	3.91486	4.09393	4.273	0.0450361	0.0368357	0.163255	0.138959
chr21	34860277	34860377	7446987	0	-	0.33	(0.32,0.35]	chr21	759849	3	INTRON	INTRON	RUNX1	ENSG00000159216.19	ENST00000300305.7:ENST00000675419.1:ENST00000437180.5:ENST00000344691.8:ENST00000482318.5:ENST00000399240.5:ENST00000358356.9:ENST00000399237.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	24	2	3.91486	4.09393	4.273	0.0450361	0.0368357	0.163255	0.138959
chr3	57761247	57761347	1435685	0	+	0.33	(0.32,0.35]	chr3	151661	30	INTRON	INTRON	SLMAP	ENSG00000163681.16	ENST00000295951.7:ENST00000659926.1:ENST00000659705.1:ENST00000671191.1:ENST00000667800.1:ENST00000655012.1:ENST00000428312.6:ENST00000664084.1:ENST00000657480.1:ENST00000467901.1:ENST00000295952.7:ENST00000383718.7:ENST00000449503.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	24	2	3.91486	4.09393	4.273	0.0450361	0.0368357	0.163255	0.138959
chr3	107561956	107562056	1470137	0	+	0.33	(0.32,0.35]	chr3	154137	352	INTRON	INTRON	BBX	ENSG00000114439.19	ENST00000415149.6:ENST00000402543.5:ENST00000325805.13:ENST00000485939.5:ENST00000427402.5:ENST00000416476.6:ENST00000454540.5:ENST00000449335.5:ENST00000431630.5:ENST00000458458.5:ENST00000456817.5:ENST00000456419.5:ENST00000402163.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	24	2	3.91486	4.09393	4.273	0.0450361	0.0368357	0.163255	0.138959
chr8	86524814	86524876	3790753	0	+	0.33871	(0.32,0.35]	chr8	351481	1	SS3_ADJ	SS3_ADJ:SS5_ADJ:SS3_PROX:SS5_PROX:INTRON	CPNE3	ENSG00000085719.13	ENST00000517490.6:ENST00000621783.4:ENST00000620393.4:ENST00000621526.4:ENST00000621245.4:ENST00000523469.5:ENST00000522240.1	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	3.91486	4.09393	4.273	0.0450361	0.0368357	0.163255	0.138959
chr8	108466429	108466529	3847216	0	+	0.35	(0.32,0.35]	chr8	354307	19	INTRON	INTRON	EMC2	ENSG00000104412.8	ENST00000220853.8:ENST00000517784.5:ENST00000519642.1:ENST00000520294.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	24	2	3.91486	4.09393	4.273	0.0450361	0.0368357	0.163255	0.138959
chr8	126179047	126179147	4050422	0	-	0.35	(0.32,0.35]	chr8	369353	656	INTRON	INTRON	LINC00861	ENSG00000245164.9	ENST00000651482.1	lncRNA	lncRNA	lncRNA	lncRNA	0	24	2	3.91486	4.09393	4.273	0.0450361	0.0368357	0.163255	0.138959
chr9	32975709	32975805	4242498	0	-	0.322917	(0.32,0.35]	chr9	389945	13	EXON_MRNA	EXON_MRNA:INTRON	APTX	ENSG00000137074.20	ENST00000672846.1:ENST00000672519.1:ENST00000672244.1:ENST00000673416.1:ENST00000673360.1:ENST00000379825.7:ENST00000379817.7:ENST00000397172.8:ENST00000494649.5:ENST00000673211.1:ENST00000672615.1:ENST00000673485.1:ENST00000672476.1:ENST00000673171.1:ENST00000672152.1:ENST00000436040.7:ENST00000472896.6:ENST00000465003.6:ENST00000479656.6:ENST00000673333.1:ENST00000673487.1:ENST00000467331.6:ENST00000482687.6:ENST00000483148.6:ENST00000672438.1:ENST00000485479.6:ENST00000673598.1:ENST00000460940.6:ENST00000309615.8:ENST00000379819.6:ENST00000672286.1:ENST00000672493.1:ENST00000673248.1:ENST00000671774.1:ENST00000474658.7:ENST00000495360.6:ENST00000672281.1:ENST00000476858.6:ENST00000672535.1:ENST00000463596.6:ENST00000379813.7:ENST00000468275.6:ENST00000673181.1:ENST00000477119.2:ENST00000671912.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	24	2	3.91486	4.09393	4.273	0.0450361	0.0368357	0.163255	0.138959
chrX	119872903	119873003	7713608	0	+	0.34	(0.32,0.35]	chrX	789269	2	SS3_PROX	SS3_PROX:INTRON	NDUFA1	ENSG00000125356.7	ENST00000371437.5	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	3.91486	4.09393	4.273	0.0450361	0.0368357	0.163255	0.138959
chr17	81624563	81624662	6849484	0	-	0.434343	(0.408,0.44]	chr17	678237	19	INTRON	INTRON	NPLOC4	ENSG00000182446.14	ENST00000331134.11:ENST00000374747.9:ENST00000574897.5:ENST00000625705.1:ENST00000570300.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	87	2	2.38802	4.093825	5.79963	0.00178825	1.39468e-4	0.0392749	0.0107072
chr7	130090996	130091096	3413799	0	+	0.33	(0.32,0.35]	chr7	319098	198	INTRON	INTRON	KLHDC10	ENSG00000128607.14	ENST00000335420.10:ENST00000463413.1:ENST00000468226.1	protein_coding	protein_coding	protein_coding	protein_coding	3	164	2	3.25047	4.093249999999999	4.93603	5.01598e-4	3.72519e-7	0.0207034	3.13235e-4
chr2	173908755	173908853	1268501	0	-	0.173469	[0,0.28]	chr2	134191	9	UTR3	UTR3:EXON_MRNA:INTRON	SP3	ENSG00000172845.18	ENST00000650743.1:ENST00000651846.1:ENST00000310015.12:ENST00000416195.1:ENST00000418194.7:ENST00000465379.1:ENST00000652005.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	110	2	1.90035	4.0931049999999995	6.28586	0.0173564	2.0925e-4	0.112318	0.0131276
chr7	130094594	130094694	3413835	0	+	0.19	[0,0.28]	chr7	319099	3	SS3_PROX	SS3_PROX:INTRON	KLHDC10	ENSG00000128607.14	ENST00000335420.10:ENST00000463413.1:ENST00000468226.1	protein_coding	protein_coding	protein_coding	protein_coding	2	87	2	3.18349	4.0930599999999995	5.00263	0.013055	6.16875e-4	0.093385	0.0223951
chr18	80123731	80123831	6938235	0	+	0.52	(0.515,0.57]	chr18	686196	57	INTRON	INTRON	ADNP2	ENSG00000101544.9	ENST00000262198.9:ENST00000560752.5:ENST00000559951.5:ENST00000560561.1:ENST00000561195.1	protein_coding	protein_coding	protein_coding	protein_coding	3	73	2	2.40178	4.092995	5.78421	0.00382306	1.63043e-5	0.0542786	0.00304426
chr6	143510611	143510710	3242536	0	-	0.272727	[0,0.28]	chr6	301198	28	INTRON	INTRON	FUCA2	ENSG00000001036.14	ENST00000002165.11:ENST00000367585.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	60	2	2.63238	4.09297	5.55356	0.0259691	0.00278704	0.133676	0.0469265
chr3	21577788	21577888	1387686	0	+	0.37	(0.35,0.378]	chr3	145351	344	INTRON	INTRON	ZNF385D-AS1	ENSG00000225542.2	ENST00000662195.1:ENST00000412369.1	lncRNA	lncRNA	lncRNA	lncRNA	1	53	2	2.57049	4.092965	5.61544	0.0262669	5.06729e-4	0.133676	0.020816
chr6	140333619	140333719	2969792	0	+	0.4	(0.378,0.408]	chr6	279019	181	INTRON	INTRON	ENSG00000288714	ENSG00000288714.1	ENST00000684511.1	lncRNA	lncRNA	lncRNA	lncRNA	2	67	2	2.29798	4.09211	5.88624	0.0147606	1.19481e-4	0.106702	0.00988798
chr15	28260179	28260276	6123428	0	-	0.268041	[0,0.28]	chr15	583323	26	INTRON	INTRON	HERC2	ENSG00000128731.18	ENST00000261609.13:ENST00000564734.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	59	2	3.18138	4.092005	5.00263	0.013055	0.00487606	0.093385	0.0640618
chr20	5585751	5585846	7312088	0	-	0.189474	[0,0.28]	chr20	744594	16	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	GPCPD1	ENSG00000125772.14	ENST00000379019.7:ENST00000481038.5:ENST00000481690.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	59	2	3.18138	4.092005	5.00263	0.013055	0.00487606	0.093385	0.0640618
chr1	167730226	167730326	247847	0	+	0.34	(0.32,0.35]	chr1	29490	76	INTRON	INTRON	MPZL1	ENSG00000197965.12	ENST00000464954.1:ENST00000359523.7:ENST00000448405.5:ENST00000392121.7:ENST00000465787.5:ENST00000474859.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	76	2	2.30731	4.091795	5.87628	0.0176772	5.28936e-5	0.10525	0.00592337
chr18	55967632	55967732	6910771	0	+	0.44	(0.408,0.44]	chr18	684213	738	INTRON	INTRON	ENSG00000267327	ENSG00000267327.2	ENST00000589440.1	lncRNA	lncRNA	lncRNA	lncRNA	1	51	2	2.78122	4.09165	5.40208	0.015812	2.37882e-4	0.101453	0.0136195
chr22	20398597	20398697	7479119	0	+	0.21	[0,0.28]	chr22	762912	28	INTRON	INTRON	ZNF74	ENSG00000185252.19	ENST00000611540.4:ENST00000403682.7:ENST00000400451.7:ENST00000357502.5:ENST00000493734.5:ENST00000420626.1:ENST00000437275.5:ENST00000405993.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	59	2	2.74901	4.091645	5.43428	0.0188843	0.00400834	0.118148	0.0551303
chr1	20767964	20768064	389667	0	-	0.33	(0.32,0.35]	chr1	46548	3	SS3_PROX	SS3_PROX:INTRON	HP1BP3	ENSG00000127483.19	ENST00000438032.6:ENST00000312239.10:ENST00000375003.6:ENST00000419948.5:ENST00000424732.5	protein_coding	protein_coding	protein_coding	protein_coding	1	60	2	2.30673	4.091505	5.87628	0.0584434	5.28936e-5	0.167723	0.00592337
chr5	55969149	55969249	2623354	0	-	0.45	(0.44,0.476]	chr5	249277	2	SS5_PROX	SS5_PROX:INTRON	IL6ST	ENSG00000134352.20	ENST00000381298.7:ENST00000336909.9:ENST00000381287.8:ENST00000651614.1:ENST00000503773.6:ENST00000502326.7:ENST00000381294.7:ENST00000381293.6:ENST00000381286.7:ENST00000522633.2:ENST00000577363.1:ENST00000396816.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	76	2	2.6062	4.091375	5.57655	0.00148054	3.3967e-4	0.0353633	0.0170719
chr15	27265841	27265941	5985102	0	+	0.41	(0.408,0.44]	chr15	569164	2387	INTRON	INTRON	GABRG3	ENSG00000182256.13	ENST00000615808.5:ENST00000555083.5	protein_coding	protein_coding	protein_coding	protein_coding	1	51	2	3.05705	4.091365	5.12568	0.00658331	7.90919e-4	0.0701901	0.0258324
chr2	167840921	167841021	1258209	0	-	0.44	(0.408,0.44]	chr2	133322	253	INTRON	INTRON	B3GALT1-AS1	ENSG00000235335.3	ENST00000430546.2:ENST00000657553.1:ENST00000670221.1:ENST00000436982.2	lncRNA	lncRNA	lncRNA	lncRNA	1	51	2	3.05705	4.091365	5.12568	0.00658331	7.90919e-4	0.0701901	0.0258324
chr20	47226605	47226702	7348194	0	-	0.443299	(0.44,0.476]	chr20	749247	17	INTRON	INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000467200.6:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4	protein_coding	protein_coding	protein_coding	protein_coding	3	76	2	2.30673	4.09118	5.87563	0.0055175	8.84961e-5	0.0672816	0.00842626
chr9	123896110	123896209	4345686	0	-	0.454545	(0.44,0.476]	chr9	399137	167	INTRON	INTRON	DENND1A	ENSG00000119522.17	ENST00000373624.6:ENST00000394215.7:ENST00000373620.7:ENST00000373618.1	protein_coding	protein_coding	protein_coding	protein_coding	3	76	2	2.30673	4.09118	5.87563	0.0055175	8.84961e-5	0.0672816	0.00842626
chr3	43707253	43707353	1410343	0	+	0.25	[0,0.28]	chr3	147938	2	SS3_PROX	SS3_PROX:INTRON	ABHD5	ENSG00000011198.10	ENST00000643520.1:ENST00000458276.7:ENST00000649763.1:ENST00000643140.1:ENST00000643500.1:ENST00000644371.2:ENST00000013894.3:ENST00000646378.1:ENST00000643477.1:ENST00000646799.1:ENST00000454293.2:ENST00000642351.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	80	2	2.78941	4.090815	5.39222	0.00453865	0.00320409	0.0595107	0.0521823
chr13	52519346	52519446	5504589	0	+	0.5	(0.476,0.515]	chr13	526731	41	INTRON	INTRON	TPTE2P3	ENSG00000244471.6	ENST00000418237.6:ENST00000441562.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	1	50	2	2.9435	4.0905949999999995	5.23769	0.00929849	5.17244e-4	0.0817766	0.0203753
chr5	145804427	145804527	2746331	0	-	0.53	(0.515,0.57]	chr5	258695	75	INTRON	INTRON	PRELID2	ENSG00000186314.12	ENST00000683046.1:ENST00000334744.8:ENST00000394450.6:ENST00000505416.5:ENST00000511435.1	protein_coding	protein_coding	protein_coding	protein_coding	1	46	2	2.76354	4.0905450000000005	5.41755	0.0147344	1.1703e-4	0.0983813	0.00929802
chr1	167995215	167995313	249081	0	+	0.326531	(0.32,0.35]	chr1	29582	14	INTRON	INTRON	DCAF6	ENSG00000143164.16	ENST00000432587.6:ENST00000367843.7:ENST00000470721.5:ENST00000367840.4:ENST00000312263.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	53	2	3.41554	4.090275	4.76501	0.0114287	0.00153152	0.0886611	0.0361484
chr1	100106811	100106911	515595	0	-	0.39	(0.378,0.408]	chr1	60448	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	SASS6	ENSG00000156876.10	ENST00000462159.1:ENST00000287482.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	23	2	3.96471	4.0901700000000005	4.21563	0.032421	0.0315429	0.145026	0.13151
chr11	130082516	130082615	4885834	0	+	0.393939	(0.378,0.408]	chr11	456911	114	INTRON	INTRON	APLP2	ENSG00000084234.18	ENST00000650012.1:ENST00000533616.5:ENST00000532456.5:ENST00000534761.5:ENST00000338167.10:ENST00000528499.5:ENST00000529701.1:ENST00000526330.5:ENST00000534001.1:ENST00000527702.5:ENST00000534582.5:ENST00000529235.5:ENST00000533713.5:ENST00000533618.5:ENST00000533195.5:ENST00000530132.5:ENST00000533532.5:ENST00000263574.9:ENST00000345598.9:ENST00000278756.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	23	2	3.96471	4.0901700000000005	4.21563	0.032421	0.0315429	0.145026	0.13151
chr12	64628435	64628535	5155177	0	+	0.38	(0.378,0.408]	chr12	488093	169	INTRON	INTRON	RASSF3	ENSG00000153179.13	ENST00000637125.1:ENST00000542104.6:ENST00000283172.8:ENST00000336061.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	23	2	3.96471	4.0901700000000005	4.21563	0.032421	0.0315429	0.145026	0.13151
chr13	112865463	112865562	5548036	0	+	0.393939	(0.378,0.408]	chr13	530065	25	INTRON	INTRON	ATP11A	ENSG00000068650.19	ENST00000375645.8:ENST00000375630.6:ENST00000487903.5:ENST00000471555.5:ENST00000415301.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	23	2	3.96471	4.0901700000000005	4.21563	0.032421	0.0315429	0.145026	0.13151
chr16	28387457	28387557	6468552	0	-	0.38	(0.378,0.408]	chr16	624628	36	INTRON	INTRON	EIF3CL	ENSG00000205609.13	ENST00000398944.7:ENST00000380876.5	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	3.96471	4.0901700000000005	4.21563	0.032421	0.0315429	0.145026	0.13151
chr17	82900731	82900831	6695725	0	+	0.38	(0.378,0.408]	chr17	654994	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	TBCD	ENSG00000141556.22	ENST00000682479.1:ENST00000682722.1:ENST00000684464.1:ENST00000684544.1:ENST00000681983.1:ENST00000684361.1:ENST00000683184.1:ENST00000683282.1:ENST00000684408.1:ENST00000355528.9:ENST00000683444.1:ENST00000684776.1:ENST00000683041.1:ENST00000684760.1:ENST00000684349.1:ENST00000682213.1:ENST00000683009.1:ENST00000682921.1:ENST00000539345.6:ENST00000684000.1:ENST00000684188.1:ENST00000684429.1:ENST00000682610.1:ENST00000683821.1:ENST00000682654.1:ENST00000576160.6:ENST00000571712.5:ENST00000576996.5:ENST00000574801.5:ENST00000683584.1:ENST00000682099.1:ENST00000684559.1:ENST00000571316.5:ENST00000576760.5:ENST00000572984.5:ENST00000683839.1:ENST00000574975.5:ENST00000572953.5:ENST00000571796.5:ENST00000682315.1:ENST00000574422.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	23	2	3.96471	4.0901700000000005	4.21563	0.032421	0.0315429	0.145026	0.13151
chr18	46179427	46179527	6899135	0	+	0.39	(0.378,0.408]	chr18	683605	47	INTRON	INTRON	C18orf25	ENSG00000152242.11	ENST00000588730.1:ENST00000587591.5:ENST00000619230.1:ENST00000615052.5:ENST00000619301.4:ENST00000615553.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	23	2	3.96471	4.0901700000000005	4.21563	0.032421	0.0315429	0.145026	0.13151
chr2	47474425	47474524	774251	0	+	0.393939	(0.378,0.408]	chr2	87299	30	INTRON	INTRON	MSH2	ENSG00000095002.15	ENST00000543555.6:ENST00000644092.1:ENST00000645339.1:ENST00000646415.1:ENST00000645506.1:ENST00000406134.5:ENST00000233146.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	23	2	3.96471	4.0901700000000005	4.21563	0.032421	0.0315429	0.145026	0.13151
chr2	117827961	117828059	855134	0	+	0.397959	(0.378,0.408]	chr2	96014	17	EXON_MRNA	EXON_MRNA:INTRON	DDX18	ENSG00000088205.13	ENST00000263239.7:ENST00000415038.1:ENST00000476149.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	23	2	3.96471	4.0901700000000005	4.21563	0.032421	0.0315429	0.145026	0.13151
chr2	240519841	240519928	1346271	0	-	0.390805	(0.378,0.408]	chr2	141221	2	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	ANKMY1	ENSG00000144504.16	ENST00000361678.8:ENST00000391987.5:ENST00000401804.6:ENST00000272972.7:ENST00000406958.5:ENST00000373318.6:ENST00000403283.5:ENST00000391988.3:ENST00000405523.7	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	3.96471	4.0901700000000005	4.21563	0.032421	0.0315429	0.145026	0.13151
chr3	48448116	48448211	1421130	0	+	0.389474	(0.378,0.408]	chr3	149362	2	INTRON	INTRON	ATRIP	ENSG00000164053.22	ENST00000635082.1:ENST00000635099.1:ENST00000346691.9:ENST00000320211.10:ENST00000639561.1:ENST00000635464.1:ENST00000412052.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	23	2	3.96471	4.0901700000000005	4.21563	0.032421	0.0315429	0.145026	0.13151
chr4	110057813	110057912	2226321	0	-	0.393939	(0.378,0.408]	chr4	218005	57	INTRON	INTRON	ELOVL6	ENSG00000170522.10	ENST00000394607.7:ENST00000302274.8:ENST00000514184.5:ENST00000507451.1:ENST00000506625.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	23	2	3.96471	4.0901700000000005	4.21563	0.032421	0.0315429	0.145026	0.13151
chr5	131537704	131537804	2718193	0	-	0.38	(0.378,0.408]	chr5	255596	48	INTRON	INTRON	RAPGEF6	ENSG00000158987.22	ENST00000509018.6:ENST00000507093.5:ENST00000296859.10:ENST00000627212.2:ENST00000308008.10:ENST00000515170.5:ENST00000510071.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	23	2	3.96471	4.0901700000000005	4.21563	0.032421	0.0315429	0.145026	0.13151
chr5	140473893	140473992	2503562	0	+	0.393939	(0.378,0.408]	chr5	239224	12	INTRON	INTRON	ANKHD1	ENSG00000131503.21	ENST00000297183.10:ENST00000360839.7:ENST00000421134.5:ENST00000246149.10	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	3.96471	4.0901700000000005	4.21563	0.032421	0.0315429	0.145026	0.13151
chr6	17870482	17870582	3067377	0	-	0.38	(0.378,0.408]	chr6	285088	140	INTRON	INTRON	KIF13A	ENSG00000137177.20	ENST00000378814.9:ENST00000259711.11:ENST00000378826.6:ENST00000378843.6:ENST00000636847.1:ENST00000507576.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	23	2	3.96471	4.0901700000000005	4.21563	0.032421	0.0315429	0.145026	0.13151
chr6	108242101	108242201	3184427	0	-	0.38	(0.378,0.408]	chr6	296565	187	INTRON	INTRON	SNX3	ENSG00000112335.15	ENST00000230085.13:ENST00000368979.6:ENST00000426155.6:ENST00000349379.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	23	2	3.96471	4.0901700000000005	4.21563	0.032421	0.0315429	0.145026	0.13151
chr7	128603117	128603217	3408080	0	+	0.39	(0.378,0.408]	chr7	318364	107	INTRON	INTRON	ENSG00000280828:ENSG00000242588	ENSG00000280828.1:ENSG00000242588.6	ENST00000479267.2:ENST00000605862.5	lncRNA	lncRNA	lncRNA:unprocessed_pseudogene	lncRNA:unprocessed_pseudogene	0	23	2	3.96471	4.0901700000000005	4.21563	0.032421	0.0315429	0.145026	0.13151
chr9	6893432	6893532	4101518	0	+	0.4	(0.378,0.408]	chr9	373689	3	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	KDM4C	ENSG00000107077.19	ENST00000536108.5:ENST00000438023.5:ENST00000381306.7:ENST00000381309.8:ENST00000489243.5:ENST00000543771.5:ENST00000496464.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	23	2	3.96471	4.0901700000000005	4.21563	0.032421	0.0315429	0.145026	0.13151
chrX	53608275	53608351	7821091	0	-	0.381579	(0.378,0.408]	chrX	798116	2	INTRON	INTRON	HUWE1	ENSG00000086758.16	ENST00000262854.11:ENST00000342160.7:ENST00000612484.4:ENST00000218328.12	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	23	2	3.96471	4.0901700000000005	4.21563	0.032421	0.0315429	0.145026	0.13151
chr12	49325000	49325100	5132848	0	+	0.49	(0.476,0.515]	chr12	483902	1	SS3_PROX	SS3_PROX:INTRON	TROAP	ENSG00000135451.13	ENST00000551245.5:ENST00000257909.8:ENST00000549891.5:ENST00000550346.5:ENST00000546735.5:ENST00000546776.5:ENST00000551192.5:ENST00000547807.5:ENST00000551567.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	50	2	2.8863	4.089555	5.29281	0.0111679	4.07635e-4	0.0877435	0.0181306
chr2	67398469	67398568	801048	0	+	0.515152	(0.476,0.515]	chr2	89513	4	INTRON	INTRON	ETAA1	ENSG00000143971.9	ENST00000645739.1:ENST00000644028.1:ENST00000272342.6:ENST00000462772.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	50	2	2.8863	4.089555	5.29281	0.0111679	4.07635e-4	0.0877435	0.0181306
chr5	69320036	69320136	2636791	0	-	0.57	(0.515,0.57]	chr5	250449	4	SS5_PROX	SS5_PROX:INTRON	CCDC125	ENSG00000183323.13	ENST00000396496.7:ENST00000396499.5:ENST00000460090.5:ENST00000383374.6:ENST00000511257.1:ENST00000512045.5:ENST00000513172.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	49	2	2.43589	4.089525	5.74316	0.0370871	2.06122e-5	0.139194	0.00352433
chr1	51724228	51724328	100466	0	+	0.38	(0.378,0.408]	chr1	13265	98	INTRON	INTRON	OSBPL9	ENSG00000117859.19	ENST00000371714.5:ENST00000428468.6:ENST00000447887.5:ENST00000495776.5:ENST00000435274.6:ENST00000453295.5:ENST00000489990.5:ENST00000484890.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	52	2	2.78946	4.08947	5.38948	0.0158859	2.85992e-4	0.101453	0.0150568
chr1	77681885	77681984	493457	0	-	0.30303	(0.28,0.32]	chr1	58319	42	INTRON	INTRON	ZZZ3	ENSG00000036549.13	ENST00000370801.8:ENST00000370798.5:ENST00000433749.5:ENST00000414381.5:ENST00000463166.5:ENST00000469944.1:ENST00000458763.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	111	2	1.92031	4.08939	6.25847	0.0182101	1.29215e-5	0.107833	0.00266147
chr1	45838178	45838278	94159	0	+	0.33	(0.32,0.35]	chr1	12696	82	INTRON	INTRON	MAST2	ENSG00000086015.23	ENST00000470809.1:ENST00000361297.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	52	2	3.28107	4.089375	4.89768	0.00793135	0.00262488	0.076155	0.0470772
chr3	139352250	139352349	1518913	0	+	0.323232	(0.32,0.35]	chr3	158555	13	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	MRPS22	ENSG00000175110.14	ENST00000495075.5:ENST00000687538.1:ENST00000688697.1:ENST00000684961.1:ENST00000693155.1:ENST00000692727.1:ENST00000492644.2:ENST00000686433.1:ENST00000690298.1:ENST00000310776.9:ENST00000680020.1:ENST00000480644.2:ENST00000498505.5:ENST00000691070.1:ENST00000480938.5:ENST00000689286.1:ENST00000478464.6:ENST00000689925.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	52	2	3.28107	4.089375	4.89768	0.00793135	0.00262488	0.076155	0.0470772
chr5	69888602	69888701	2381888	0	+	0.242424	[0,0.28]	chr5	229544	129	INTRON	INTRON	GUSBP13	ENSG00000198237.8	ENST00000506490.2	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	3	95	2	2.22743	4.08935	5.95127	0.0097118	7.37141e-4	0.0875962	0.02495
chr2	148649447	148649547	891799	0	+	0.35	(0.32,0.35]	chr2	98781	35	INTRON	INTRON	EPC2	ENSG00000135999.12	ENST00000457184.5:ENST00000258484.11:ENST00000409654.5:ENST00000397424.2	protein_coding	protein_coding	protein_coding	protein_coding	2	70	2	2.4053	4.08925	5.7732	0.0108284	3.96807e-4	0.0920575	0.0185763
chr20	47213225	47213323	7348056	0	-	0.397959	(0.378,0.408]	chr20	749229	1	INTRON	INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000467200.6:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4	protein_coding	protein_coding	protein_coding	protein_coding	1	52	2	3.00568	4.089245	5.17281	0.00811866	7.27294e-4	0.0766625	0.0245647
chr8	48022767	48022867	3752380	0	+	0.39	(0.378,0.408]	chr8	349044	138	INTRON	INTRON	UBE2V2	ENSG00000169139.12	ENST00000523432.5:ENST00000521346.5:ENST00000523111.7:ENST00000518360.5:ENST00000517630.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	52	2	3.00568	4.089245	5.17281	0.00811866	7.27294e-4	0.0766625	0.0245647
chr18	8626097	8626197	6868387	0	+	0.31	(0.28,0.32]	chr18	680460	7	INTRON	INTRON	RAB12	ENSG00000206418.5	ENST00000649141.2	protein_coding	protein_coding	protein_coding	protein_coding	1	54	2	3.07744	4.089065	5.10069	0.00610574	0.00604536	0.0700813	0.0676501
chrX	102774217	102774317	7695953	0	+	0.3	(0.28,0.32]	chrX	787606	34	INTRON	INTRON	LINC00630	ENSG00000223546.8	ENST00000661018.1:ENST00000431616.5:ENST00000664568.1:ENST00000668536.1:ENST00000440496.5:ENST00000420471.5:ENST00000663114.1:ENST00000658813.1:ENST00000435966.1:ENST00000656628.1	lncRNA	lncRNA	lncRNA	lncRNA	1	54	2	3.07744	4.089065	5.10069	0.00610574	0.00604536	0.0700813	0.0676501
chr9	136727448	136727517	4375401	0	-	0.521739	(0.515,0.57]	chr9	403178	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SNHG7	ENSG00000233016.8	ENST00000414282.5:ENST00000685573.1:ENST00000686963.1:ENST00000653276.1:ENST00000416970.5:ENST00000668354.1:ENST00000447221.1	lncRNA	lncRNA	lncRNA	lncRNA	9	245	2	3.18995	4.0889050000000005	4.98786	1.2146e-6	7.01658e-8	7.07699e-4	1.15623e-4
chr11	48020904	48021004	4789622	0	+	0.38	(0.378,0.408]	chr11	443265	395	INTRON	INTRON	PTPRJ	ENSG00000149177.14	ENST00000418331.7:ENST00000440289.6:ENST00000527952.1:ENST00000534219.5	protein_coding	protein_coding	protein_coding	protein_coding	1	48	2	3.1136	4.08886	5.06412	0.00443339	0.0030522	0.061054	0.0493883
chr4	82374626	82374723	1986538	0	+	0.381443	(0.378,0.408]	chr4	198641	6	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	HNRNPD-DT	ENSG00000272677.2	ENST00000687638.1:ENST00000692269.1:ENST00000684831.1:ENST00000685272.1:ENST00000688287.1:ENST00000609575.2:ENST00000609552.1:ENST00000691472.1:ENST00000685898.1:ENST00000685940.1:ENST00000687393.1:ENST00000690101.1:ENST00000684794.1:ENST00000688760.1	lncRNA	lncRNA	lncRNA	lncRNA	1	48	2	3.1136	4.08886	5.06412	0.00443339	0.0030522	0.061054	0.0493883
chr3	197752407	197752505	1597351	0	+	0.336735	(0.32,0.35]	chr3	165493	12	INTRON	INTRON	FYTTD1	ENSG00000122068.13	ENST00000428738.5:ENST00000494309.5:ENST00000415708.6:ENST00000412924.5:ENST00000241502.9:ENST00000418169.5:ENST00000426031.5:ENST00000424384.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	69	2	2.71053	4.088475	5.46642	0.00346747	0.00127669	0.0539802	0.0326395
chr2	74207106	74207203	813315	0	+	0.42268	(0.408,0.44]	chr2	90934	1	INTRON	INTRON	MTHFD2	ENSG00000065911.13	ENST00000677997.1:ENST00000677170.1:ENST00000678684.1:ENST00000409804.5:ENST00000489041.2:ENST00000470592.5:ENST00000678955.1:ENST00000394053.7:ENST00000677377.1:ENST00000679055.1:ENST00000678340.1:ENST00000477455.5:ENST00000409601.1:ENST00000678228.1:ENST00000462026.2:ENST00000678623.1:ENST00000678731.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	52	2	2.58624	4.088345	5.59045	0.0273686	9.6776e-5	0.123904	0.00826486
chr1	32743881	32743980	66221	0	+	0.50505	(0.476,0.515]	chr1	8480	13	INTRON	INTRON	KIAA1522	ENSG00000162522.11	ENST00000401073.7	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	3.83018	4.08833	4.34648	0.0423385	0.0193566	0.161744	0.108861
chr1	37963969	37964068	426261	0	-	0.494949	(0.476,0.515]	chr1	51674	34	INTRON	INTRON	SF3A3	ENSG00000183431.12	ENST00000373019.5	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	3.83018	4.08833	4.34648	0.0423385	0.0193566	0.161744	0.108861
chr1	112936295	112936395	523945	0	-	0.49	(0.476,0.515]	chr1	61694	4	INTRON	INTRON	SLC16A1	ENSG00000155380.13	ENST00000679803.1:ENST00000369626.8:ENST00000538576.5:ENST00000429288.2:ENST00000458229.6:ENST00000679846.1:ENST00000478835.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	23	2	3.83018	4.08833	4.34648	0.0423385	0.0193566	0.161744	0.108861
chr1	226275377	226275477	647513	0	-	0.5	(0.476,0.515]	chr1	76715	69	INTRON	INTRON	LIN9	ENSG00000183814.16	ENST00000460719.5:ENST00000366808.6:ENST00000328205.9:ENST00000681046.1:ENST00000481685.1	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	3.83018	4.08833	4.34648	0.0423385	0.0193566	0.161744	0.108861
chr11	9150399	9150489	4907898	0	-	0.477778	(0.476,0.515]	chr11	460014	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DENND5A	ENSG00000184014.9	ENST00000328194.8:ENST00000681203.1:ENST00000530780.2:ENST00000680358.1:ENST00000679999.1:ENST00000679458.1:ENST00000680470.1:ENST00000680599.1:ENST00000680554.1:ENST00000679745.1:ENST00000679926.1:ENST00000680252.1:ENST00000681425.1:ENST00000681158.1:ENST00000679460.1:ENST00000679568.1:ENST00000679446.1:ENST00000680294.1:ENST00000680742.1:ENST00000680885.1:ENST00000680576.1:ENST00000530044.5:ENST00000527700.5:ENST00000524446.2:ENST00000526707.5:ENST00000531580.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	23	2	3.83018	4.08833	4.34648	0.0423385	0.0193566	0.161744	0.108861
chr13	20870499	20870599	5556026	0	-	0.49	(0.476,0.515]	chr13	531028	14	INTRON	INTRON	XPO4	ENSG00000132953.18	ENST00000255305.11:ENST00000490513.1:ENST00000465018.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	23	2	3.83018	4.08833	4.34648	0.0423385	0.0193566	0.161744	0.108861
chr14	20333218	20333312	5833160	0	-	0.478723	(0.476,0.515]	chr14	553981	5	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	CCNB1IP1	ENSG00000100814.18	ENST00000353689.8:ENST00000437553.6:ENST00000358932.9:ENST00000556854.5:ENST00000557665.5:ENST00000555348.5:ENST00000555963.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	23	2	3.83018	4.08833	4.34648	0.0423385	0.0193566	0.161744	0.108861
chr17	46938110	46938207	6620863	0	+	0.505155	(0.476,0.515]	chr17	645724	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GOSR2	ENSG00000108433.17	ENST00000640608.1:ENST00000640792.1:ENST00000640358.1:ENST00000638634.1:ENST00000225567.9:ENST00000623037.2:ENST00000573224.2:ENST00000639985.1:ENST00000576910.7:ENST00000639199.1:ENST00000639365.1:ENST00000638892.1:ENST00000638838.1:ENST00000638216.1:ENST00000638579.1:ENST00000638189.1:ENST00000639066.1:ENST00000640051.2:ENST00000638697.1:ENST00000640443.1:ENST00000640711.1:ENST00000638219.1:ENST00000639388.1:ENST00000640495.1:ENST00000638374.1:ENST00000640138.1:ENST00000572403.5:ENST00000640068.1:ENST00000570879.2:ENST00000393456.7:ENST00000640723.1:ENST00000638468.1:ENST00000639713.1:ENST00000640871.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	23	2	3.83018	4.08833	4.34648	0.0423385	0.0193566	0.161744	0.108861
chr3	44631509	44631604	1411836	0	+	0.494737	(0.476,0.515]	chr3	148083	3	SS5_PROX	SS5_PROX:INTRON	ZNF197	ENSG00000186448.15	ENST00000383744.8:ENST00000344387.9:ENST00000383745.6:ENST00000334075.6:ENST00000396058.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	23	2	3.83018	4.08833	4.34648	0.0423385	0.0193566	0.161744	0.108861
chr3	49973043	49973142	1423288	0	+	0.50505	(0.476,0.515]	chr3	149978	5	INTRON	INTRON	RBM6	ENSG00000004534.15	ENST00000442092.5:ENST00000443081.5:ENST00000419610.5:ENST00000441115.5:ENST00000422955.5:ENST00000454079.5:ENST00000266022.9:ENST00000425608.5:ENST00000434592.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	23	2	3.83018	4.08833	4.34648	0.0423385	0.0193566	0.161744	0.108861
chr5	78244933	78245033	2650646	0	-	0.48	(0.476,0.515]	chr5	251781	36	INTRON	INTRON	AP3B1	ENSG00000132842.15	ENST00000519295.6:ENST00000255194.11:ENST00000695515.1:ENST00000695454.1:ENST00000695511.1:ENST00000695453.1:ENST00000695455.1:ENST00000695513.1:ENST00000695488.1:ENST00000695450.1:ENST00000695507.1:ENST00000695512.1:ENST00000695510.1:ENST00000695451.1:ENST00000695447.1:ENST00000695505.1:ENST00000519888.6:ENST00000695514.1:ENST00000517940.2:ENST00000517561.2:ENST00000695452.1:ENST00000695449.1:ENST00000695540.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	23	2	3.83018	4.08833	4.34648	0.0423385	0.0193566	0.161744	0.108861
chr6	26116532	26116632	3070789	0	-	0.49	(0.476,0.515]	chr6	285403	10	INTRON	INTRON	H2BC4	ENSG00000180596.8	ENST00000314332.5	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	3.83018	4.08833	4.34648	0.0423385	0.0193566	0.161744	0.108861
chr7	128600717	128600817	3408056	0	+	0.5	(0.476,0.515]	chr7	318364	83	INTRON	INTRON	ENSG00000280828:ENSG00000242588	ENSG00000280828.1:ENSG00000242588.6	ENST00000479267.2:ENST00000605862.5	lncRNA	lncRNA	lncRNA:unprocessed_pseudogene	lncRNA:unprocessed_pseudogene	0	23	2	3.83018	4.08833	4.34648	0.0423385	0.0193566	0.161744	0.108861
chr9	88408007	88408107	4152242	0	+	0.49	(0.476,0.515]	chr9	378721	182	INTRON	INTRON	SPIN1	ENSG00000106723.17	ENST00000485804.5:ENST00000469017.6:ENST00000375859.4:ENST00000462844.5:ENST00000485565.6:ENST00000483785.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	23	2	3.83018	4.08833	4.34648	0.0423385	0.0193566	0.161744	0.108861
chr18	694734	694834	6939597	0	-	0.31	(0.28,0.32]	chr18	686430	4	SS3_PROX	SS3_PROX:INTRON	ENOSF1	ENSG00000132199.20	ENST00000647584.2:ENST00000383578.7:ENST00000340116.12:ENST00000581475.5:ENST00000580982.5:ENST00000585128.6:ENST00000584453.5:ENST00000578651.5:ENST00000585004.5:ENST00000579053.5:ENST00000583771.1:ENST00000580605.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	59	2	2.73077	4.0883	5.44583	0.0220748	5.8721e-4	0.115395	0.0220073
chr6	149734790	149734888	3246850	0	-	0.316327	(0.28,0.32]	chr6	301677	27	INTRON	INTRON	NUP43	ENSG00000120253.14	ENST00000340413.7:ENST00000367404.8:ENST00000403890.7:ENST00000367402.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	59	2	2.87382	4.088175	5.30253	0.014868	0.0010319	0.0989021	0.0294094
chr2	61386812	61386911	1129707	0	-	0.30303	(0.28,0.32]	chr2	121474	31	INTRON	INTRON	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000453133.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	55	2	3.30893	4.08812	4.86731	0.0116253	0.00260504	0.0889104	0.0470772
chr8	129993158	129993257	4063699	0	-	0.494949	(0.476,0.515]	chr8	369844	218	INTRON	INTRON	CYRIB	ENSG00000153310.21	ENST00000694912.1:ENST00000523288.5:ENST00000519110.5:ENST00000401979.6:ENST00000523509.5:ENST00000517654.5:ENST00000518879.5:ENST00000522702.5:ENST00000521223.5:ENST00000518283.5:ENST00000523993.5:ENST00000519020.5:ENST00000518167.5:ENST00000522361.1:ENST00000523514.1:ENST00000518285.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	63	2	2.76855	4.08812	5.40769	0.00244302	6.23078e-4	0.0456956	0.0229151
chr15	101283374	101283473	6269913	0	-	0.484848	(0.476,0.515]	chr15	597986	12	INTRON	INTRON	SNRPA1	ENSG00000131876.18	ENST00000254193.11:ENST00000558036.5:ENST00000559309.5:ENST00000560307.5:ENST00000560433.5:ENST00000394082.8:ENST00000540017.6:ENST00000560496.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	77	2	2.72228	4.08809	5.4539	8.52725e-4	5.16081e-4	0.0264928	0.0208667
chr18	705375	705474	6939706	0	-	0.474747	(0.44,0.476]	chr18	686437	77	INTRON	INTRON	ENOSF1	ENSG00000132199.20	ENST00000647584.2:ENST00000383578.7:ENST00000340116.12:ENST00000581475.5:ENST00000580982.5:ENST00000585128.6:ENST00000584453.5:ENST00000578651.5:ENST00000585004.5:ENST00000579053.5:ENST00000583771.1:ENST00000580605.5:ENST00000581332.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	53	2	3.39322	4.088075	4.78293	0.00292033	0.00187283	0.0494641	0.0390476
chr16	28153820	28153909	6467874	0	-	0.393258	(0.378,0.408]	chr16	624543	5	INTRON	INTRON	XPO6	ENSG00000169180.12	ENST00000304658.10:ENST00000565698.5:ENST00000564337.5:ENST00000566175.1:ENST00000574435.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	77	2	2.42827	4.08807	5.74787	0.00336942	2.21531e-4	0.0532965	0.0136064
chr19	8305701	8305801	7130858	0	-	0.49	(0.476,0.515]	chr19	718417	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA:INTRON	CD320	ENSG00000167775.11	ENST00000301458.10:ENST00000537716.6:ENST00000596002.5:ENST00000599573.1:ENST00000598299.1:ENST00000596246.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	68	2	2.13304	4.08804	6.04304	0.024866	3.44951e-5	0.132101	0.00495154
chr4	159267736	159267819	2075158	0	+	0.361446	(0.35,0.378]	chr4	205226	1	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	RAPGEF2	ENSG00000109756.10	ENST00000644474.1:ENST00000691494.1:ENST00000505478.5:ENST00000504604.5:ENST00000644902.1:ENST00000511336.5:ENST00000510510.5:ENST00000264431.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	50	2	3.31736	4.08803	4.8587	0.00695662	0.00211072	0.0718189	0.0425419
chr12	110737774	110737873	5411483	0	-	0.434343	(0.408,0.44]	chr12	516744	24	INTRON	INTRON	PPP1CC	ENSG00000186298.12	ENST00000335007.10:ENST00000340766.9:ENST00000550991.5:ENST00000551676.5:ENST00000620030.1:ENST00000551690.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:processed_transcript	2	63	2	2.64829	4.087935	5.52758	0.00400062	4.54953e-4	0.057767	0.0196892
chr13	50193550	50193650	5492099	0	+	0.44	(0.408,0.44]	chr13	526049	71	INTRON	INTRON	DLEU1	ENSG00000176124.15	ENST00000467721.5:ENST00000468522.5:ENST00000490577.5:ENST00000491341.5:ENST00000491615.5:ENST00000463474.7:ENST00000468168.5:ENST00000476738.5:ENST00000461527.7:ENST00000486895.5:ENST00000485007.5:ENST00000475913.5:ENST00000484529.5	lncRNA	lncRNA	lncRNA	lncRNA	2	63	2	2.64829	4.087935	5.52758	0.00400062	4.54953e-4	0.057767	0.0196892
chr14	103483638	103483735	5826647	0	+	0.463918	(0.44,0.476]	chr14	552919	12	INTRON	INTRON	MARK3	ENSG00000075413.19	ENST00000678179.1:ENST00000676838.1:ENST00000677348.1:ENST00000677404.1:ENST00000676694.1:ENST00000676938.1:ENST00000678619.1:ENST00000676897.1:ENST00000677214.1:ENST00000677942.1:ENST00000676830.1:ENST00000678999.1:ENST00000677228.1:ENST00000556744.2:ENST00000677104.1:ENST00000679330.1:ENST00000560417.6:ENST00000440884.7:ENST00000677035.1:ENST00000678022.1:ENST00000677560.1:ENST00000561314.6:ENST00000429436.7:ENST00000677118.1:ENST00000676564.1:ENST00000678169.1:ENST00000678175.1:ENST00000678897.1:ENST00000678278.1:ENST00000676645.1:ENST00000677829.1:ENST00000678302.1:ENST00000677133.1:ENST00000678207.1:ENST00000677360.1:ENST00000676905.1:ENST00000678343.1:ENST00000677347.1:ENST00000678071.1:ENST00000677432.1:ENST00000678237.1:ENST00000677604.1:ENST00000676518.1:ENST00000677051.1:ENST00000677857.1:ENST00000677869.1:ENST00000416682.6:ENST00000303622.13:ENST00000216288.11:ENST00000679105.1:ENST00000553942.5:ENST00000335102.9:ENST00000678091.1:ENST00000561071.5:ENST00000676745.1:ENST00000554627.5:ENST00000559274.1:ENST00000679299.1:ENST00000678661.1:ENST00000677352.1:ENST00000676944.1:ENST00000677023.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	63	2	2.82351	4.08789	5.35227	0.00191049	8.47974e-4	0.0403772	0.0267232
chr10	11565638	11565738	4555605	0	-	0.4	(0.378,0.408]	chr10	420451	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	USP6NL	ENSG00000148429.15	ENST00000609104.6:ENST00000379237.6:ENST00000443016.1:ENST00000606752.1:ENST00000609853.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	48	2	3.17089	4.08774	5.00459	0.00371142	0.00357279	0.0548435	0.0535094
chr2	97131309	97131409	831027	0	+	0.41	(0.408,0.44]	chr2	92964	38	INTRON	INTRON	ANKRD36	ENSG00000135976.21	ENST00000420699.9:ENST00000652721.1:ENST00000461153.7	protein_coding	protein_coding	protein_coding	protein_coding	1	52	2	3.2451	4.08767	4.93024	0.00337792	0.00170369	0.0516884	0.0381936
chr15	77328659	77328759	6236718	0	-	0.38	(0.378,0.408]	chr15	595305	418	INTRON	INTRON	PEAK1	ENSG00000173517.11	ENST00000560626.6:ENST00000682557.1:ENST00000558305.5:ENST00000564328.5:ENST00000567808.5:ENST00000567337.5:ENST00000569819.5:ENST00000569159.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	48	2	3.05393	4.087605	5.12128	0.00551532	0.00251746	0.0672816	0.0446195
chr7	50600908	50601008	3530724	0	-	0.4	(0.378,0.408]	chr7	329388	50	INTRON	INTRON	GRB10	ENSG00000106070.20	ENST00000335866.7:ENST00000398812.6:ENST00000398810.6:ENST00000401949.6:ENST00000402578.5:ENST00000644769.1:ENST00000403097.6:ENST00000644879.1:ENST00000406641.5:ENST00000402497.6:ENST00000357271.9:ENST00000643299.1:ENST00000407526.6:ENST00000645075.2:ENST00000473696.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	48	2	3.05393	4.087605	5.12128	0.00551532	0.00251746	0.0672816	0.0446195
chr1	235313021	235313120	663711	0	-	0.383838	(0.378,0.408]	chr1	78552	519	INTRON	INTRON	ARID4B	ENSG00000054267.22	ENST00000349213.7:ENST00000366603.6:ENST00000264183.9:ENST00000421364.5:ENST00000491632.5:ENST00000418304.1:ENST00000466653.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	66	2	3.05389	4.087585	5.12128	0.00251746	6.75567e-4	0.0446195	0.0236067
chr20	49145101	49145201	7351940	0	-	0.52	(0.515,0.57]	chr20	749652	88	INTRON	INTRON	STAU1	ENSG00000124214.21	ENST00000371856.7:ENST00000371828.7:ENST00000340954.11:ENST00000347458.9:ENST00000360426.8:ENST00000371792.5:ENST00000371802.5:ENST00000437404.2	protein_coding	protein_coding	protein_coding	protein_coding	1	47	2	2.60899	4.08758	5.56617	0.0232669	5.44229e-5	0.118148	0.00603408
chr11	61427617	61427714	4957038	0	-	0.319588	(0.28,0.32]	chr11	465889	4	INTRON	INTRON	CPSF7	ENSG00000149532.16	ENST00000340437.8:ENST00000394888.8:ENST00000439958.8:ENST00000448745.5:ENST00000537641.5:ENST00000477890.6:ENST00000544669.5:ENST00000539952.5:ENST00000535222.5:ENST00000544990.5:ENST00000544585.5:ENST00000413232.5:ENST00000537162.5:ENST00000543545.5:ENST00000541963.5:ENST00000536548.5:ENST00000450000.5:ENST00000449811.5:ENST00000413184.6:ENST00000536145.3:ENST00000545934.5:ENST00000463244.6:ENST00000626926.1:ENST00000489728.1:ENST00000474684.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	55	2	2.73945	4.087575	5.4357	0.017681	0.00215368	0.11319	0.0417866
chr20	504165	504255	7303575	0	-	0.288889	(0.28,0.32]	chr20	743542	1	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	CSNK2A1	ENSG00000101266.19	ENST00000646561.1:ENST00000217244.9:ENST00000643660.1:ENST00000645623.1:ENST00000400227.8:ENST00000349736.10:ENST00000644170.1:ENST00000643700.1:ENST00000645910.1:ENST00000645840.1:ENST00000646305.1:ENST00000645260.1:ENST00000642689.1:ENST00000645234.1:ENST00000646814.1:ENST00000646477.1:ENST00000644885.1:ENST00000644710.1:ENST00000647155.1:ENST00000644003.1:ENST00000645249.1:ENST00000647026.1:ENST00000400217.7:ENST00000647348.1:ENST00000643600.1:ENST00000643680.1:ENST00000460062.7:ENST00000643968.1:ENST00000644177.1:ENST00000609525.2:ENST00000645091.1:ENST00000609606.6:ENST00000646443.1:ENST00000608066.6:ENST00000646908.1:ENST00000645641.1:ENST00000645187.1:ENST00000642160.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	55	2	2.73945	4.087575	5.4357	0.017681	0.00215368	0.11319	0.0417866
chr2	174367230	174367330	1271060	0	-	0.47	(0.44,0.476]	chr2	134338	83	INTRON	INTRON	CIR1	ENSG00000138433.16	ENST00000342016.8:ENST00000377973.4	protein_coding	protein_coding	protein_coding	protein_coding	1	51	2	2.67572	4.08725	5.49878	0.0212064	1.52058e-4	0.113017	0.0106137
chr19	21037099	21037198	7039280	0	+	0.414141	(0.408,0.44]	chr19	701855	4	INTRON	INTRON	ZNF430	ENSG00000118620.13	ENST00000599548.5:ENST00000594110.5:ENST00000261560.10	protein_coding	protein_coding	protein_coding	protein_coding	2	69	2	2.26792	4.08715	5.90638	0.0179973	1.84308e-5	0.106756	0.00328489
chr10	119866951	119867050	4706435	0	-	0.444444	(0.44,0.476]	chr10	434340	67	INTRON	INTRON	MCMBP	ENSG00000197771.13	ENST00000360003.7:ENST00000369077.4:ENST00000466047.5:ENST00000569515.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	23	2	3.8344	4.086695	4.33899	0.041276	0.0206616	0.161534	0.110999
chr12	42193250	42193350	5313156	0	-	0.47	(0.44,0.476]	chr12	505317	207	INTRON	INTRON	YAF2	ENSG00000015153.15	ENST00000534854.7:ENST00000327791.8:ENST00000380790.4:ENST00000552109.5:ENST00000547622.5:ENST00000547351.5:ENST00000551268.5:ENST00000551528.5:ENST00000548661.5:ENST00000546726.5:ENST00000546972.5:ENST00000547724.1:ENST00000552928.5:ENST00000548917.1:ENST00000547254.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	23	2	3.8344	4.086695	4.33899	0.041276	0.0206616	0.161534	0.110999
chr17	16424552	16424647	6562501	0	+	0.442105	(0.44,0.476]	chr17	637861	4	INTRON	INTRON	TRPV2	ENSG00000187688.15	ENST00000338560.12	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	3.8344	4.086695	4.33899	0.041276	0.0206616	0.161534	0.110999
chr18	79180901	79181001	6935127	0	+	0.45	(0.44,0.476]	chr18	685886	36	INTRON	INTRON	ATP9B	ENSG00000166377.21	ENST00000586366.5:ENST00000426216.6:ENST00000307671.12:ENST00000590271.5:ENST00000490210.6:ENST00000588772.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	23	2	3.8344	4.086695	4.33899	0.041276	0.0206616	0.161534	0.110999
chr19	45840773	45840871	7193628	0	-	0.44898	(0.44,0.476]	chr19	728616	18	INTRON	INTRON	SYMPK	ENSG00000125755.19	ENST00000245934.12:ENST00000593504.5:ENST00000600237.5:ENST00000599460.5:ENST00000599814.5:ENST00000598896.5:ENST00000593899.5:ENST00000601582.1:ENST00000596518.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	23	2	3.8344	4.086695	4.33899	0.041276	0.0206616	0.161534	0.110999
chr2	27199869	27199963	1086191	0	-	0.457447	(0.44,0.476]	chr2	116135	4	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SLC5A6	ENSG00000138074.15	ENST00000310574.8:ENST00000461757.1:ENST00000488743.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	23	2	3.8344	4.086695	4.33899	0.041276	0.0206616	0.161534	0.110999
chr2	152730840	152730940	894373	0	+	0.47	(0.44,0.476]	chr2	99117	49	EXON_MRNA	EXON_MRNA:INTRON	ARL6IP6	ENSG00000177917.12	ENST00000690727.1:ENST00000685752.1:ENST00000688293.1:ENST00000686839.1:ENST00000689155.1:ENST00000691702.1:ENST00000691523.1:ENST00000688012.1:ENST00000687504.1:ENST00000455875.6:ENST00000692124.1:ENST00000693573.1:ENST00000692399.1:ENST00000425034.6:ENST00000686080.1:ENST00000326446.10:ENST00000463690.2:ENST00000688130.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	23	2	3.8344	4.086695	4.33899	0.041276	0.0206616	0.161534	0.110999
chr3	45596985	45597085	1416127	0	+	0.47	(0.44,0.476]	chr3	148594	3	INTRON	INTRON	LIMD1	ENSG00000144791.10	ENST00000465039.5:ENST00000440097.5:ENST00000273317.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	23	2	3.8344	4.086695	4.33899	0.041276	0.0206616	0.161534	0.110999
chr4	174281515	174281614	2300527	0	-	0.474747	(0.44,0.476]	chr4	222501	120	INTRON	INTRON	FBXO8	ENSG00000164117.14	ENST00000393674.7:ENST00000503293.5:ENST00000515664.5:ENST00000513696.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	23	2	3.8344	4.086695	4.33899	0.041276	0.0206616	0.161534	0.110999
chr6	17648405	17648490	3065615	0	-	0.458824	(0.44,0.476]	chr6	284812	1	INTRON	INTRON	NUP153	ENSG00000124789.12	ENST00000613258.4:ENST00000537253.5:ENST00000262077.3	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	3.8344	4.086695	4.33899	0.041276	0.0206616	0.161534	0.110999
chr6	85523561	85523659	3150196	0	-	0.44898	(0.44,0.476]	chr6	293705	15	INTRON	INTRON	ENSG00000271793:SNX14	ENSG00000271793.2:ENSG00000135317.14	ENST00000682083.1:ENST00000683074.1:ENST00000681965.1:ENST00000682171.1:ENST00000684150.1:ENST00000683785.1:ENST00000682497.1:ENST00000684647.1:ENST00000683643.1:ENST00000682023.1:ENST00000682022.1:ENST00000683542.1:ENST00000683126.1:ENST00000683857.1:ENST00000683898.1:ENST00000682854.1:ENST00000682491.1:ENST00000682174.1:ENST00000684239.1:ENST00000682939.1:ENST00000684570.1:ENST00000682057.1:ENST00000682878.1:ENST00000683880.1:ENST00000684422.1:ENST00000682504.1:ENST00000683726.1:ENST00000684680.1:ENST00000683196.1:ENST00000683458.1:ENST00000683803.1:ENST00000684281.1:ENST00000682991.1:ENST00000683754.1:ENST00000683481.1:ENST00000682455.1:ENST00000682034.1:ENST00000684451.1:ENST00000683583.1:ENST00000682776.1:ENST00000683873.1:ENST00000683878.1:ENST00000683195.1:ENST00000682995.1:ENST00000682374.1:ENST00000683698.1:ENST00000682454.1:ENST00000682694.1:ENST00000682412.1:ENST00000514801.2:ENST00000682926.1:ENST00000682682.1:ENST00000418862.2:ENST00000346348.7:ENST00000314673.8:ENST00000682633.1:ENST00000683085.1:ENST00000682688.1:ENST00000684319.1:ENST00000683577.1:ENST00000682709.1:ENST00000684299.1:ENST00000682133.1:ENST00000682594.1:ENST00000683473.1:ENST00000682106.1:ENST00000683364.1:ENST00000683436.1:ENST00000684220.1:ENST00000683909.1:ENST00000684118.1:ENST00000681981.1:ENST00000682738.1:ENST00000509338.6:ENST00000684717.1:ENST00000682660.1:ENST00000683073.1:ENST00000515216.6:ENST00000684581.1:ENST00000683763.1:ENST00000683479.1:ENST00000682464.1:ENST00000684108.1:ENST00000682514.1:ENST00000684017.1:ENST00000684273.1:ENST00000513865.5:ENST00000505648.5:ENST00000508980.5:ENST00000369627.6:ENST00000503491.5:ENST00000508658.6:ENST00000683097.1:ENST00000683541.1:ENST00000683759.1:ENST00000369635.7:ENST00000503608.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	23	2	3.8344	4.086695	4.33899	0.041276	0.0206616	0.161534	0.110999
chr7	127831640	127831739	3404207	0	+	0.464646	(0.44,0.476]	chr7	318140	237	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000468166.5:ENST00000465900.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	23	2	3.8344	4.086695	4.33899	0.041276	0.0206616	0.161534	0.110999
chr10	102355839	102355937	4513775	0	+	0.479592	(0.476,0.515]	chr10	415799	15	EXON_MRNA	EXON_MRNA:INTRON	GBF1	ENSG00000107862.7	ENST00000676513.1:ENST00000676939.1:ENST00000677439.1:ENST00000677240.1:ENST00000677618.1:ENST00000679155.1:ENST00000679280.1:ENST00000678036.1:ENST00000678476.1:ENST00000678504.1:ENST00000677247.1:ENST00000677655.1:ENST00000678351.1:ENST00000679238.1:ENST00000677487.1:ENST00000677506.1:ENST00000678666.1:ENST00000676560.1:ENST00000673650.1:ENST00000674034.1:ENST00000369983.5:ENST00000679003.1:ENST00000678486.1:ENST00000676682.1:ENST00000676807.1:ENST00000676993.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	50	2	2.82673	4.08631	5.34589	0.0134403	3.224e-4	0.0946278	0.0159645
chr16	88626508	88626603	6418838	0	+	0.494737	(0.476,0.515]	chr16	615849	14	EXON_MRNA	EXON_MRNA:INTRON	ZC3H18	ENSG00000158545.16	ENST00000301011.10:ENST00000452588.6:ENST00000564161.1:ENST00000564341.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	50	2	2.82673	4.08631	5.34589	0.0134403	3.224e-4	0.0946278	0.0159645
chr4	73109125	73109224	2159303	0	-	0.464646	(0.44,0.476]	chr4	212662	52	INTRON	INTRON	ANKRD17	ENSG00000132466.20	ENST00000358602.9:ENST00000558247.5:ENST00000330838.10:ENST00000509867.6:ENST00000561029.1	protein_coding	protein_coding	protein_coding	protein_coding	1	47	2	3.14559	4.08631	5.02703	0.00384923	0.00278015	0.0562562	0.0469265
chr6	111005749	111005848	2939542	0	+	0.444444	(0.44,0.476]	chr6	276871	56	INTRON	INTRON	RPF2	ENSG00000197498.13	ENST00000368864.8:ENST00000441448.7:ENST00000607388.1:ENST00000425871.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	47	2	3.14559	4.08631	5.02703	0.00384923	0.00278015	0.0562562	0.0469265
chr3	194466196	194466295	1890992	0	-	0.313131	(0.28,0.32]	chr3	189242	36	INTRON	INTRON	ATP13A3	ENSG00000133657.17	ENST00000687055.1:ENST00000645538.1:ENST00000645319.2:ENST00000439040.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	54	2	3.1268	4.086295	5.04579	0.00714672	0.00508956	0.0723634	0.0646039
chr3	195309337	195309434	1894563	0	-	0.463918	(0.44,0.476]	chr3	189618	1	INTRON	INTRON	ACAP2	ENSG00000114331.16	ENST00000326793.11:ENST00000635383.1:ENST00000439758.3	protein_coding	protein_coding	protein_coding	protein_coding	1	48	2	3.41176	4.08622	4.76068	0.00653414	0.00130987	0.0699952	0.0333932
chr22	19457570	19457670	7554677	0	-	0.54	(0.515,0.57]	chr22	772366	1	SS5_PROX	SS5_PROX:INTRON	UFD1	ENSG00000070010.19	ENST00000263202.15:ENST00000399523.5:ENST00000459854.5:ENST00000466373.1:ENST00000447868.5:ENST00000421968.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	62	2	2.92045	4.08614	5.25183	0.00128922	2.6074e-4	0.0328334	0.014326
chr4	1719100	1719200	2095273	0	-	0.51	(0.476,0.515]	chr4	207251	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS3_PROX:INTRON	TMEM129	ENSG00000168936.11	ENST00000303277.6:ENST00000382936.8:ENST00000536901.1:ENST00000480360.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	50	2	3.05152	4.08612	5.12072	0.0064848	8.42139e-4	0.0699952	0.0263691
chr5	91371003	91371102	2674858	0	-	0.30303	(0.28,0.32]	chr5	253079	25	UTR3	UTR3:EXON_MRNA	ARRDC3	ENSG00000113369.9	ENST00000265138.4:ENST00000511391.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	11	476	2	3.40478	4.08566	4.76654	4.27661e-7	2.17327e-7	3.4259e-4	2.38737e-4
chr5	181238824	181238904	2783862	0	-	0.3125	(0.28,0.32]	chr5	262917	3	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	RACK1	ENSG00000204628.12	ENST00000512805.6:ENST00000511473.5:ENST00000504325.5:ENST00000507756.5:ENST00000502905.5:ENST00000511566.5:ENST00000376817.8:ENST00000508682.5:ENST00000504128.5:ENST00000509535.5:ENST00000504726.1:ENST00000511900.5:ENST00000513060.5:ENST00000512968.5:ENST00000510199.5:ENST00000502844.5:ENST00000507000.5:ENST00000514183.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	92	2	3.14457	4.085615	5.02666	0.0027935	9.588e-4	0.0488769	0.0282401
chr13	83056514	83056614	5633812	0	-	0.29	(0.28,0.32]	chr13	536804	2776	INTRON	INTRON	ENSG00000286385	ENSG00000286385.1	ENST00000663739.1	lncRNA	lncRNA	lncRNA	lncRNA	1	60	2	3.08462	4.08542	5.08622	0.0078976	0.00227525	0.076155	0.0437013
chr4	32070175	32070275	1942150	0	+	0.3	(0.28,0.32]	chr4	194727	720	INTRON	INTRON	LINC02506	ENSG00000251129.3	ENST00000662669.1:ENST00000665582.2:ENST00000667252.2:ENST00000660373.2:ENST00000684849.1:ENST00000513211.2:ENST00000659613.1:ENST00000657576.1:ENST00000686730.1:ENST00000685407.1:ENST00000685455.1:ENST00000655951.1	lncRNA	lncRNA	lncRNA	lncRNA	1	59	2	2.67975	4.085175	5.4906	0.0252505	4.89126e-4	0.12011	0.0199693
chr6	161002851	161002951	3024601	0	+	0.42	(0.408,0.44]	chr6	282304	104	INTRON	INTRON	MAP3K4	ENSG00000085511.20	ENST00000366919.6:ENST00000392142.9:ENST00000542952.5:ENST00000366920.6:ENST00000348824.11:ENST00000544041.5:ENST00000490904.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	63	2	2.60048	4.085105	5.56973	0.00484324	3.81714e-4	0.0640618	0.0181283
chr17	64518422	64518521	6662014	0	+	0.363636	(0.35,0.378]	chr17	650211	12	INTRON	INTRON	CEP95	ENSG00000258890.8	ENST00000579860.5:ENST00000580188.1:ENST00000556440.7:ENST00000553956.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	111	2	1.92645	4.08502	6.24359	0.0104433	4.53314e-6	0.0855102	0.00143802
chr18	188573	188672	6855130	0	+	0.363636	(0.35,0.378]	chr18	679521	79	INTRON	INTRON	USP14	ENSG00000101557.15	ENST00000582707.5:ENST00000400266.7:ENST00000261601.8:ENST00000578942.5:ENST00000383589.6:ENST00000583119.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	66	2	2.63527	4.0849899999999995	5.53471	0.00443588	6.96925e-4	0.061054	0.024224
chr10	110266025	110266125	4520306	0	+	0.3	(0.28,0.32]	chr10	416936	45	INTRON	INTRON	MXI1	ENSG00000119950.21	ENST00000332674.9:ENST00000453116.5:ENST00000361248.8:ENST00000239007.11:ENST00000460667.5:ENST00000393134.5:ENST00000651225.1:ENST00000652649.1:ENST00000651613.1:ENST00000652243.1:ENST00000651495.1:ENST00000652506.1:ENST00000650900.1:ENST00000651811.1:ENST00000651167.1:ENST00000651516.1:ENST00000651467.1:ENST00000651004.1:ENST00000650843.1:ENST00000651318.1:ENST00000650644.1:ENST00000650696.1:ENST00000652604.1:ENST00000651109.1:ENST00000652463.1:ENST00000651557.1:ENST00000650810.1:ENST00000650952.1:ENST00000484030.5:ENST00000652028.1:ENST00000651866.1:ENST00000651848.1:ENST00000442296.5:ENST00000652323.1:ENST00000369612.1:ENST00000650752.1:ENST00000651112.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	59	2	2.91851	4.08496	5.25141	0.0130672	0.00125199	0.093385	0.0328543
chr1	26278618	26278713	49945	0	+	0.6	(0.57,1]	chr1	6267	15	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	CEP85	ENSG00000130695.16	ENST00000451429.8:ENST00000252992.8:ENST00000453146.1:ENST00000469609.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	33	2	3.49517	4.0847999999999995	4.67443	8.07515e-4	6.03609e-4	0.0258804	0.0226059
chr1	54389475	54389575	463592	0	-	0.54	(0.515,0.57]	chr1	55784	328	INTRON	INTRON	SSBP3	ENSG00000157216.16	ENST00000610401.5:ENST00000357475.9:ENST00000371319.8:ENST00000417664.7:ENST00000533946.6:ENST00000371320.8:ENST00000525990.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	43	2	3.19178	4.0845	4.97722	0.00289534	0.00168681	0.0494641	0.0370386
chr13	52293039	52293137	5598509	0	-	0.530612	(0.515,0.57]	chr13	535227	11	INTRON	INTRON	TPTE2P2	ENSG00000272281.6	ENST00000605924.5:ENST00000403471.6	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	1	43	2	3.19178	4.0845	4.97722	0.00289534	0.00168681	0.0494641	0.0370386
chr1	155667633	155667732	563097	0	-	0.545455	(0.515,0.57]	chr1	67145	59	INTRON	INTRON	YY1AP1	ENSG00000163374.20	ENST00000368339.9:ENST00000295566.8:ENST00000368330.6:ENST00000436865.5:ENST00000359205.9:ENST00000407221.5:ENST00000404643.5:ENST00000361140.8:ENST00000361831.9:ENST00000347088.9:ENST00000354691.9:ENST00000368340.9:ENST00000311573.9:ENST00000442834.6:ENST00000355499.9:ENST00000405763.7:ENST00000488784.5:ENST00000493625.5:ENST00000477470.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	43	2	3.12663	4.08444	5.04225	0.00374498	0.00131841	0.0562234	0.0331539
chr20	63684727	63684825	7300152	0	+	0.540816	(0.515,0.57]	chr20	742924	17	INTRON	INTRON	RTEL1	ENSG00000258366.11	ENST00000370018.7:ENST00000360203.11:ENST00000508582.7:ENST00000318100.9:ENST00000482936.6:ENST00000687123.1:ENST00000647249.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	43	2	3.12663	4.08444	5.04225	0.00374498	0.00131841	0.0562234	0.0331539
chr8	99056140	99056240	3811688	0	+	0.53	(0.515,0.57]	chr8	353070	1	SS5_PROX	SS5_PROX:INTRON	VPS13B	ENSG00000132549.20	ENST00000496144.5:ENST00000683334.1:ENST00000682853.1:ENST00000357162.7:ENST00000358544.7:ENST00000683619.1:ENST00000441350.2:ENST00000684269.1:ENST00000682806.1:ENST00000683869.1:ENST00000682153.1:ENST00000682358.1:ENST00000682145.1:ENST00000355155.6:ENST00000682234.1:ENST00000683486.1:ENST00000684308.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	43	2	3.12663	4.08444	5.04225	0.00374498	0.00131841	0.0562234	0.0331539
chr11	68318995	68319094	4815999	0	+	0.515152	(0.476,0.515]	chr11	448753	58	INTRON	INTRON	LRP5	ENSG00000162337.12	ENST00000294304.12:ENST00000529993.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	47	2	3.13389	4.084275	5.03466	0.00405473	0.00252065	0.0578376	0.0446195
chr15	49136749	49136849	6167629	0	-	0.51	(0.476,0.515]	chr15	587869	2	SS5_PROX	SS5_PROX:INTRON	COPS2	ENSG00000166200.15	ENST00000388901.10:ENST00000299259.10:ENST00000542928.5:ENST00000558843.5:ENST00000561248.1:ENST00000559016.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	47	2	3.13389	4.084275	5.03466	0.00405473	0.00252065	0.0578376	0.0446195
chr7	35813462	35813562	3306018	0	+	0.5	(0.476,0.515]	chr7	306967	118	INTRON	INTRON	SEPTIN7	ENSG00000122545.21	ENST00000399034.7:ENST00000435235.6:ENST00000350320.11:ENST00000672279.1:ENST00000634600.1:ENST00000635669.1:ENST00000635175.1:ENST00000475109.5:ENST00000635047.1:ENST00000493626.5:ENST00000473201.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	47	2	3.13389	4.084275	5.03466	0.00405473	0.00252065	0.0578376	0.0446195
chr11	47504584	47504682	4949911	0	-	0.489796	(0.476,0.515]	chr11	464224	33	INTRON	INTRON	CELF1	ENSG00000149187.19	ENST00000310513.10:ENST00000687097.1:ENST00000531165.5:ENST00000532048.5:ENST00000530151.5:ENST00000525841.5:ENST00000528434.5:ENST00000543178.5:ENST00000526419.1:ENST00000528538.5:ENST00000526277.1	protein_coding	protein_coding	protein_coding	protein_coding	1	47	2	3.07422	4.084225	5.09423	0.00506023	0.00204588	0.0646039	0.04086
chr19	47629790	47629890	7085969	0	+	0.48	(0.476,0.515]	chr19	709045	218	INTRON	INTRON	ENSG00000268746	ENSG00000268746.1	ENST00000599924.1	lncRNA	lncRNA	lncRNA	lncRNA	1	47	2	3.07422	4.084225	5.09423	0.00506023	0.00204588	0.0646039	0.04086
chr2	53945721	53945821	1120322	0	-	0.28	[0,0.28]	chr2	120090	31	INTRON	INTRON	PSME4	ENSG00000068878.15	ENST00000404125.6:ENST00000389993.7:ENST00000481518.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	80	2	2.8193	4.0841	5.3489	0.00514751	0.00285248	0.062965	0.0494641
chr19	17510948	17511046	7151516	0	-	0.336735	(0.32,0.35]	chr19	722626	2	SS5_PROX	SS5_PROX:INTRON	PGLS-DT	ENSG00000269439.7	ENST00000596643.5:ENST00000598141.2:ENST00000655024.1:ENST00000595116.2	lncRNA	lncRNA	lncRNA	lncRNA	2	76	2	2.22429	4.0840700000000005	5.94385	0.0226421	3.75519e-5	0.117557	0.00490694
chr19	631647	631745	7110067	0	-	0.387755	(0.378,0.408]	chr19	713933	11	INTRON	INTRON	POLRMT	ENSG00000099821.14	ENST00000588649.7:ENST00000592863.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	48	2	2.9917	4.083985	5.17627	0.0068789	0.00208234	0.0749442	0.0411801
chr19	47629591	47629690	7085967	0	+	0.383838	(0.378,0.408]	chr19	709045	216	INTRON	INTRON	ENSG00000268746	ENSG00000268746.1	ENST00000599924.1	lncRNA	lncRNA	lncRNA	lncRNA	1	48	2	2.9917	4.083985	5.17627	0.0068789	0.00208234	0.0749442	0.0411801
chr4	1221061	1221160	2094717	0	-	0.393939	(0.378,0.408]	chr4	207127	45	INTRON	INTRON	CTBP1	ENSG00000159692.16	ENST00000382952.8:ENST00000290921.10:ENST00000504092.5:ENST00000510739.1:ENST00000505826.5:ENST00000514669.5:ENST00000506180.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	48	2	2.9917	4.083985	5.17627	0.0068789	0.00208234	0.0749442	0.0411801
chr4	86957456	86957556	1994020	0	+	0.39	(0.378,0.408]	chr4	199032	85	INTRON	INTRON	AFF1	ENSG00000172493.23	ENST00000504956.5:ENST00000395146.9:ENST00000507468.5:ENST00000674009.1:ENST00000503477.5:ENST00000511996.5:ENST00000511442.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	48	2	2.9917	4.083985	5.17627	0.0068789	0.00208234	0.0749442	0.0411801
chr7	74887086	74887182	3556726	0	-	0.385417	(0.378,0.408]	chr7	331173	16	INTRON	INTRON	STAG3L2	ENSG00000277072.5	ENST00000651031.1:ENST00000650988.1:ENST00000652688.1:ENST00000426587.5:ENST00000622110.5:ENST00000618922.4:ENST00000611766.4:ENST00000622215.1	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript:transcribed_unprocessed_pseudogene	1	48	2	2.9917	4.083985	5.17627	0.0068789	0.00208234	0.0749442	0.0411801
chr3	43706557	43706657	1410336	0	+	0.44	(0.408,0.44]	chr3	147937	36	INTRON	INTRON	ABHD5	ENSG00000011198.10	ENST00000643520.1:ENST00000458276.7:ENST00000649763.1:ENST00000643140.1:ENST00000643500.1:ENST00000644371.2:ENST00000013894.3:ENST00000646378.1:ENST00000643477.1:ENST00000646799.1:ENST00000454293.2:ENST00000642351.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	189	2	3.31544	4.08396	4.85248	8.358e-6	1.04691e-6	0.00208551	6.32938e-4
chr16	2690869	2690968	6279623	0	+	0.444444	(0.44,0.476]	chr16	600714	42	INTRON	INTRON	KCTD5	ENSG00000167977.9	ENST00000301738.9:ENST00000570005.5:ENST00000564246.1:ENST00000564195.1:ENST00000569689.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	47	2	3.2029	4.083905	4.96491	0.0034249	0.00308681	0.0517761	0.0510391
chr7	111382371	111382471	3622306	0	-	0.47	(0.44,0.476]	chr7	337093	4185	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	47	2	3.2029	4.083905	4.96491	0.0034249	0.00308681	0.0517761	0.0510391
chr1	8749735	8749835	373104	0	-	0.37	(0.35,0.378]	chr1	43545	467	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000656437.1:ENST00000659924.1:ENST00000480342.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	81	2	2.11531	4.083855	6.0524	0.0119629	7.64013e-5	0.0962115	0.0078038
chr2	241317498	241317548	1053619	0	+	0.28	[0,0.28]	chr2	112186	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	SEPTIN2	ENSG00000168385.18	ENST00000391973.6:ENST00000428282.5:ENST00000492978.5:ENST00000360051.7:ENST00000407017.5:ENST00000445030.5:ENST00000428524.5:ENST00000469434.5:ENST00000616972.4:ENST00000495463.5:ENST00000482304.5:ENST00000475474.5:ENST00000401990.5:ENST00000469175.5:ENST00000407971.5:ENST00000461048.5:ENST00000457335.5:ENST00000436795.5:ENST00000494824.5:ENST00000411484.5:ENST00000462147.5:ENST00000434955.5:ENST00000466211.5:ENST00000391971.7:ENST00000402092.6:ENST00000484740.1:ENST00000473479.5:ENST00000464128.5:ENST00000441533.5:ENST00000467971.5:ENST00000425899.5:ENST00000443492.5:ENST00000437066.5:ENST00000484648.1:ENST00000429791.5:ENST00000420786.5:ENST00000475823.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	95	2	2.40162	4.08385	5.76608	0.00511828	0.00140074	0.064713	0.0340865
chr12	51079534	51079633	5325010	0	-	0.454545	(0.44,0.476]	chr12	507783	25	INTRON	INTRON	CSRNP2	ENSG00000110925.7	ENST00000228515.6:ENST00000548206.1:ENST00000548981.5:ENST00000552899.5:ENST00000546935.5:ENST00000552680.1:ENST00000550461.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	47	2	3.02366	4.08372	5.14378	0.00603307	0.00184943	0.0700813	0.0388609
chr5	176532716	176532816	2775697	0	-	0.46	(0.44,0.476]	chr5	261470	2	SS3_PROX	SS3_PROX:INTRON	RNF44	ENSG00000146083.12	ENST00000274811.9:ENST00000513029.5:ENST00000504160.1:ENST00000504434.1:ENST00000509404.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	63	2	2.86452	4.08371	5.3029	0.00159222	0.00102616	0.0367961	0.029231300000000002
chr11	852065	852164	4720912	0	+	0.414141	(0.408,0.44]	chr11	436589	13	INTRON	INTRON	TSPAN4	ENSG00000214063.12	ENST00000397411.6:ENST00000397396.5:ENST00000397397.7:ENST00000397408.5:ENST00000530404.5:ENST00000525334.5:ENST00000397406.5:ENST00000409543.6:ENST00000525201.5:ENST00000397404.5:ENST00000464987.5:ENST00000346501.8:ENST00000532375.5:ENST00000524895.5:ENST00000526055.5:ENST00000409531.5:ENST00000527644.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	23	2	3.83494	4.08366	4.33238	0.0411442	0.0218901	0.161534	0.11491
chr12	131788477	131788576	5249881	0	+	0.414141	(0.408,0.44]	chr12	499226	15	INTRON	INTRON	SFSWAP	ENSG00000061936.10	ENST00000261674.9:ENST00000541286.5:ENST00000539506.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	23	2	3.83494	4.08366	4.33238	0.0411442	0.0218901	0.161534	0.11491
chr16	14981792	14981892	6305203	0	+	0.41	(0.408,0.44]	chr16	603267	45	INTRON	INTRON	PDXDC1	ENSG00000179889.20	ENST00000563679.5:ENST00000563667.5:ENST00000563522.5:ENST00000535621.6:ENST00000396410.9:ENST00000566426.1:ENST00000455313.6:ENST00000562119.5:ENST00000570001.5:ENST00000569715.5:ENST00000627450.2:ENST00000565362.5:ENST00000567306.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	23	2	3.83494	4.08366	4.33238	0.0411442	0.0218901	0.161534	0.11491
chr16	24191319	24191419	6327337	0	+	0.41	(0.408,0.44]	chr16	605797	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000466124.1	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	3.83494	4.08366	4.33238	0.0411442	0.0218901	0.161534	0.11491
chr17	75354793	75354893	6837289	0	-	0.41	(0.408,0.44]	chr17	675716	216	INTRON	INTRON	GRB2	ENSG00000177885.15	ENST00000316615.9:ENST00000316804.10:ENST00000392562.5:ENST00000392564.5:ENST00000392563.5:ENST00000648046.1:ENST00000578961.5:ENST00000582582.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	23	2	3.83494	4.08366	4.33238	0.0411442	0.0218901	0.161534	0.11491
chr21	32352012	32352110	7438386	0	-	0.428571	(0.408,0.44]	chr21	758841	7	INTRON	INTRON	URB1	ENSG00000142207.7	ENST00000382751.4	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	3.83494	4.08366	4.33238	0.0411442	0.0218901	0.161534	0.11491
chr3	51498375	51498475	1697265	0	-	0.42	(0.408,0.44]	chr3	174430	12	INTRON	INTRON	DCAF1	ENSG00000145041.16	ENST00000504652.5:ENST00000423656.5:ENST00000684031.1	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	3.83494	4.08366	4.33238	0.0411442	0.0218901	0.161534	0.11491
chr3	121490708	121490808	1797891	0	-	0.42	(0.408,0.44]	chr3	180499	3	SS3_PROX	SS3_PROX:INTRON	POLQ	ENSG00000051341.15	ENST00000264233.6	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	3.83494	4.08366	4.33238	0.0411442	0.0218901	0.161534	0.11491
chr3	179614751	179614851	1567831	0	+	0.41	(0.408,0.44]	chr3	162258	4	SS3_PROX	SS3_PROX:INTRON	NDUFB5	ENSG00000136521.13	ENST00000488002.5:ENST00000611971.4:ENST00000493866.5:ENST00000259037.8:ENST00000472629.5:ENST00000468210.5:ENST00000359944.10:ENST00000477177.1:ENST00000482604.5:ENST00000480374.1:ENST00000496904.5:ENST00000473500.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	23	2	3.83494	4.08366	4.33238	0.0411442	0.0218901	0.161534	0.11491
chr4	56912952	56913044	1963363	0	+	0.434783	(0.408,0.44]	chr4	197045	5	EXON_LNCRNA	EXON_LNCRNA:INTRON	REST	ENSG00000084093.19	ENST00000640168.2:ENST00000309042.12:ENST00000640343.2:ENST00000514063.2:ENST00000638187.2:ENST00000616975.5:ENST00000622863.4:ENST00000619101.5:ENST00000611211.2:ENST00000675105.1:ENST00000675341.1:ENST00000675249.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	23	2	3.83494	4.08366	4.33238	0.0411442	0.0218901	0.161534	0.11491
chr5	140463088	140463186	2503449	0	+	0.428571	(0.408,0.44]	chr5	239212	34	INTRON	INTRON	ANKHD1	ENSG00000131503.21	ENST00000297183.10:ENST00000616482.4:ENST00000360839.7:ENST00000421134.5:ENST00000394723.7:ENST00000394722.7:ENST00000490185.1:ENST00000246149.10	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	23	2	3.83494	4.08366	4.33238	0.0411442	0.0218901	0.161534	0.11491
chr6	118616356	118616456	3199967	0	-	0.43	(0.408,0.44]	chr6	298014	424	INTRON	INTRON	CEP85L	ENSG00000111860.14	ENST00000368491.8:ENST00000368488.9:ENST00000434604.5:ENST00000392500.7:ENST00000360290.7:ENST00000419517.2:ENST00000483035.5:ENST00000476150.5:ENST00000462101.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	23	2	3.83494	4.08366	4.33238	0.0411442	0.0218901	0.161534	0.11491
chr8	129316078	129316178	4058419	0	-	0.41	(0.408,0.44]	chr8	369539	124	INTRON	INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000657400.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1	lncRNA	lncRNA	lncRNA	lncRNA	0	23	2	3.83494	4.08366	4.33238	0.0411442	0.0218901	0.161534	0.11491
chr4	105708777	105708862	2011896	0	+	0.517647	(0.515,0.57]	chr4	200417	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	GSTCD	ENSG00000138780.15	ENST00000512828.1:ENST00000394730.7:ENST00000515279.6:ENST00000515255.5:ENST00000484843.1:ENST00000507281.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	73	2	2.15866	4.08365	6.00864	0.0100547	4.25301e-6	0.0848452	0.00138219
chr18	73205380	73205480	6988026	0	-	0.42	(0.408,0.44]	chr18	691704	42	INTRON	INTRON	LINC02864	ENSG00000263711.6	ENST00000584544.5:ENST00000581011.5:ENST00000581862.6:ENST00000669547.1:ENST00000661525.1:ENST00000583405.5	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	1	47	2	3.08738	4.083605	5.07983	0.00478231	0.00247652	0.0636201	0.0446195
chr20	37206674	37206772	7266413	0	+	0.438776	(0.408,0.44]	chr20	738421	14	INTRON	INTRON	RPN2	ENSG00000118705.17	ENST00000456102.5:ENST00000373622.9:ENST00000373632.8:ENST00000237530.11:ENST00000462163.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	47	2	3.08738	4.083605	5.07983	0.00478231	0.00247652	0.0636201	0.0446195
chr5	178779902	178779999	2779268	0	-	0.412371	(0.408,0.44]	chr5	262234	33	INTRON	INTRON	AACSP1	ENSG00000250420.8	ENST00000503486.6:ENST00000521412.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	1	47	2	3.08738	4.083605	5.07983	0.00478231	0.00247652	0.0636201	0.0446195
chr3	43705169	43705268	1410322	0	+	0.282828	(0.28,0.32]	chr3	147937	22	INTRON	INTRON	ABHD5	ENSG00000011198.10	ENST00000643520.1:ENST00000458276.7:ENST00000649763.1:ENST00000643140.1:ENST00000643500.1:ENST00000644371.2:ENST00000013894.3:ENST00000646378.1:ENST00000643477.1:ENST00000646799.1:ENST00000454293.2:ENST00000642351.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	116	2	2.42463	4.0834850000000005	5.7423400000000004	0.00107687	7.31742e-4	0.0300133	0.0248722
chr21	29336839	29336938	7392735	0	+	0.464646	(0.44,0.476]	chr21	753205	68	INTRON	INTRON	BACH1	ENSG00000156273.16	ENST00000286800.8:ENST00000399921.5:ENST00000422809.5:ENST00000468059.1	protein_coding	protein_coding	protein_coding	protein_coding	2	63	2	2.54944	4.08347	5.6175	0.00591346	2.84938e-4	0.0694038	0.015495
chr7	77545897	77545997	3342099	0	+	0.36	(0.35,0.378]	chr7	311311	1	SS5_PROX	SS5_PROX:INTRON	PTPN12	ENSG00000127947.16	ENST00000248594.11:ENST00000460731.5:ENST00000523952.5:ENST00000433369.6:ENST00000415482.6:ENST00000435495.6:ENST00000418110.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	66	2	2.76192	4.083185	5.40445	0.00265021	0.00114224	0.0474328	0.0307966
chr5	65944890	65944990	2371027	0	+	0.24	[0,0.28]	chr5	228472	177	INTRON	INTRON	ERBIN	ENSG00000112851.15	ENST00000380943.6:ENST00000507490.1:ENST00000416865.6:ENST00000380935.5:ENST00000284037.10:ENST00000380938.6:ENST00000511297.5:ENST00000506030.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	58	2	3.00498	4.08314	5.1613	0.00876063	0.00866441	0.0846118	0.0787025
chr18	26074801	26074900	6959569	0	-	0.262626	[0,0.28]	chr18	688461	59	INTRON	INTRON	SS18	ENSG00000141380.14	ENST00000415083.7:ENST00000542420.6:ENST00000579640.5:ENST00000269138.9:ENST00000269137.11:ENST00000585121.5:ENST00000539244.6:ENST00000585241.5:ENST00000578954.5:ENST00000579061.5:ENST00000577636.5:ENST00000584083.5:ENST00000578700.5:ENST00000582792.5:ENST00000581021.5:ENST00000577572.5:ENST00000582448.5:ENST00000581570.5:ENST00000577751.5:ENST00000580003.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	58	2	2.90797	4.08306	5.25815	0.0118539	0.0066548	0.0962115	0.0703807
chr6	79008328	79008427	3141367	0	-	0.191919	[0,0.28]	chr6	292832	41	INTRON	INTRON	PHIP	ENSG00000146247.14	ENST00000275034.5	protein_coding	protein_coding	protein_coding	protein_coding	1	58	2	2.90797	4.08306	5.25815	0.0118539	0.0066548	0.0962115	0.0703807
chr17	49718901	49718990	6793696	0	-	0.573034	(0.57,1]	chr17	670393	5	INTRON	INTRON	FAM117A	ENSG00000121104.8	ENST00000240364.7:ENST00000513602.5:ENST00000503573.5:ENST00000511743.5:ENST00000503855.5:ENST00000514018.5:ENST00000505159.5:ENST00000506156.1:ENST00000515240.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	117	2	3.69974	4.082955	4.46617	7.94667e-7	1.22312e-8	5.43864e-4	3.82566e-5
chr1	171783062	171783150	254354	0	+	0.431818	(0.408,0.44]	chr1	30296	6	INTRON	INTRON	METTL13	ENSG00000010165.20	ENST00000361735.4:ENST00000485629.1:ENST00000362019.7:ENST00000367737.9	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	48	2	2.82042	4.08295	5.34548	0.0120121	9.40657e-4	0.0962115	0.0280776
chr11	130078227	130078327	4885791	0	+	0.41	(0.408,0.44]	chr11	456911	71	INTRON	INTRON	APLP2	ENSG00000084234.18	ENST00000650012.1:ENST00000533616.5:ENST00000532456.5:ENST00000534761.5:ENST00000338167.10:ENST00000528499.5:ENST00000529701.1:ENST00000526330.5:ENST00000534001.1:ENST00000527702.5:ENST00000534582.5:ENST00000529235.5:ENST00000533713.5:ENST00000533618.5:ENST00000533195.5:ENST00000530132.5:ENST00000533532.5:ENST00000263574.9:ENST00000345598.9:ENST00000278756.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	48	2	2.82042	4.08295	5.34548	0.0120121	9.40657e-4	0.0962115	0.0280776
chr1	44753933	44754012	92456	0	+	0.392405	(0.378,0.408]	chr1	12283	1	SS5_PROX	SS5_PROX:INTRON	KIF2C	ENSG00000142945.13	ENST00000452259.5:ENST00000493027.5:ENST00000372224.9:ENST00000455186.5:ENST00000372217.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	376	2	3.72097	4.082815	4.44466	4.38375e-7	1.63073e-8	3.78974e-4	4.54994e-5
chr16	24730899	24730999	6329225	0	+	0.36	(0.35,0.378]	chr16	605933	2	INTRON	INTRON	TNRC6A	ENSG00000090905.19	ENST00000566108.2:ENST00000395799.8:ENST00000315183.11:ENST00000562829.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	87	2	2.29482	4.0828	5.87078	0.00743782	3.6006e-5	0.0746192	0.00481059
chr11	47833459	47833559	4952016	0	-	0.27	[0,0.28]	chr11	464617	59	INTRON	INTRON	NUP160	ENSG00000030066.14	ENST00000694866.1:ENST00000378460.7:ENST00000530326.5:ENST00000528071.5:ENST00000528501.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	148	2	3.64765	4.08265	4.51765	0.00144832	1.24168e-5	0.034341000000000003	0.00262819
chr20	62919474	62919574	7362384	0	-	0.5	(0.476,0.515]	chr20	751210	47	INTRON	INTRON	DIDO1	ENSG00000101191.17	ENST00000266070.8:ENST00000395343.6:ENST00000395340.5:ENST00000370371.8:ENST00000370368.5:ENST00000354665.8	protein_coding	protein_coding	protein_coding	protein_coding	4	164	2	3.41938	4.082635	4.74589	1.62239e-5	1.72965e-6	0.00304426	8.78167e-4
chr6	26284043	26284141	3071128	0	-	0.387755	(0.378,0.408]	chr6	285471	21	INTRON	INTRON	H4C8	ENSG00000158406.6	ENST00000634956.1:ENST00000634560.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	2	108	2	4.03294	4.08248	4.13202	7.35047e-5	6.52685e-5	0.00767614	0.00669119
chr13	99546584	99546684	5527338	0	+	0.34	(0.32,0.35]	chr13	528395	2	SS3_PROX	SS3_PROX:INTRON	TM9SF2	ENSG00000125304.10	ENST00000642475.1:ENST00000376387.5	protein_coding	protein_coding	protein_coding	protein_coding	2	69	2	2.49929	4.082475	5.66566	0.00776612	6.06695e-4	0.0787356	0.0226059
chr7	4697760	4697860	3270070	0	+	0.33	(0.32,0.35]	chr7	303884	145	INTRON	INTRON	FOXK1	ENSG00000164916.11	ENST00000328914.5	protein_coding	protein_coding	protein_coding	protein_coding	2	70	2	2.92893	4.082065	5.2352	0.0028268	0.00138	0.0472361	0.0341261
chr17	21637000	21637099	6578524	0	+	0.282828	(0.28,0.32]	chr17	639549	38	INTRON	INTRON	ENSG00000260157	ENSG00000260157.3	ENST00000618784.1:ENST00000562547.3	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	2	81	2	3.29657	4.0819399999999995	4.86731	0.0116253	2.79563e-4	0.0889104	0.0148832
chr1	8627379	8627479	371877	0	-	0.48	(0.476,0.515]	chr1	43533	26	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000400907.6:ENST00000656437.1:ENST00000659924.1:ENST00000480342.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	47	2	3.01197	4.0817	5.15143	0.00633162	0.00166579	0.0722266	0.0369207
chr13	110629746	110629846	5543819	0	+	0.48	(0.476,0.515]	chr13	529660	18	INTRON	INTRON	NAXD	ENSG00000213995.12	ENST00000680254.1:ENST00000424185.7:ENST00000679389.1:ENST00000679968.1:ENST00000470164.2:ENST00000680505.1:ENST00000309957.3:ENST00000680312.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	47	2	3.01197	4.0817	5.15143	0.00633162	0.00166579	0.0722266	0.0369207
chr2	105748385	105748485	843724	0	+	0.48	(0.476,0.515]	chr2	94498	21	INTRON	INTRON	NCK2	ENSG00000071051.14	ENST00000233154.9:ENST00000451463.6:ENST00000393348.6	protein_coding	protein_coding	protein_coding	protein_coding	1	47	2	3.01197	4.0817	5.15143	0.00633162	0.00166579	0.0722266	0.0369207
chr8	11829059	11829156	3702797	0	+	0.505155	(0.476,0.515]	chr8	343519	25	INTRON	INTRON	FDFT1	ENSG00000079459.13	ENST00000538689.4:ENST00000615631.4:ENST00000618539.4:ENST00000623368.3:ENST00000446331.6:ENST00000443614.6:ENST00000220584.9:ENST00000525607.5:ENST00000525283.5:ENST00000529464.5:ENST00000525900.5:ENST00000528812.5:ENST00000622850.2:ENST00000530664.5:ENST00000525954.5:ENST00000532266.5:ENST00000528643.5:ENST00000525777.5:ENST00000528729.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	47	2	3.01197	4.0817	5.15143	0.00633162	0.00166579	0.0722266	0.0369207
chr1	28080640	28080740	408928	0	-	0.31	(0.28,0.32]	chr1	49222	222	INTRON	INTRON	EYA3	ENSG00000158161.16	ENST00000373871.8:ENST00000540618.5:ENST00000436342.6:ENST00000373863.3:ENST00000471498.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	54	2	3.17453	4.081625	4.98872	0.00838468	0.00429297	0.0774402	0.0599065
chr19	4424872	4424972	7001990	0	+	0.53	(0.515,0.57]	chr19	694544	6	INTRON	INTRON	CHAF1A	ENSG00000167670.16	ENST00000301280.10:ENST00000587739.1:ENST00000585371.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	43	2	3.25412	4.08162	4.90912	0.00224554	0.0021669	0.0435144	0.0417866
chr6	52366874	52366973	2875514	0	+	0.484848	(0.476,0.515]	chr6	272897	40	INTRON	INTRON	PAQR8:EFHC1	ENSG00000170915.9:ENSG00000096093.16	ENST00000512121.1:ENST00000635984.1:ENST00000637849.1:ENST00000635760.1:ENST00000442253.3:ENST00000491749.2:ENST00000360726.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	82	2	2.53419	4.0815600000000005	5.62893	0.00251905	8.45697e-5	0.0446195	0.00776967
chr19	49559300	49559390	7201133	0	-	0.522222	(0.515,0.57]	chr19	730449	2	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	NOSIP	ENSG00000142546.14	ENST00000596358.6:ENST00000339093.7:ENST00000598820.5:ENST00000601015.5:ENST00000601340.5:ENST00000598550.5:ENST00000599537.5:ENST00000598296.5:ENST00000594932.5:ENST00000600019.5:ENST00000598544.1:ENST00000599425.5:ENST00000598839.1:ENST00000601107.1:ENST00000593345.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:non_stop_decay:nonsense_mediated_decay	1	43	2	3.05839	4.081435	5.10448	0.00485936	0.0010345	0.0640618	0.029231300000000002
chr6	157844682	157844782	3015977	0	+	0.54	(0.515,0.57]	chr6	281353	146	INTRON	INTRON	SNX9	ENSG00000130340.17	ENST00000614703.4:ENST00000614800.4:ENST00000680863.1:ENST00000679814.1:ENST00000680464.1:ENST00000681186.1:ENST00000679732.1:ENST00000681183.1:ENST00000681534.1:ENST00000681651.1:ENST00000680089.1:ENST00000680078.1:ENST00000680974.1:ENST00000680095.1:ENST00000680015.1:ENST00000681138.1:ENST00000392185.8:ENST00000679790.1:ENST00000680495.1:ENST00000679691.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	44	2	3.47959	4.081345	4.6831	0.00471288	8.38022e-4	0.0600108	0.0263691
chr17	80545448	80545538	6684790	0	+	0.411111	(0.408,0.44]	chr17	653394	8	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	RPTOR	ENSG00000141564.15	ENST00000574767.5:ENST00000577161.5:ENST00000306801.8:ENST00000649732.1:ENST00000570891.5:ENST00000544334.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	47	2	3.20437	4.08127	4.95817	0.00372419	0.00306596	0.0535094	0.0509893
chr5	88211374	88211474	2669160	0	-	0.31	(0.28,0.32]	chr5	252658	38	INTRON	INTRON	TMEM161B	ENSG00000164180.14	ENST00000514135.5:ENST00000296595.11:ENST00000511087.5:ENST00000510089.5:ENST00000506536.5:ENST00000511218.5:ENST00000512429.5:ENST00000507872.1:ENST00000509387.5:ENST00000503755.5:ENST00000513487.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	129	2	4.02903	4.0812100000000004	4.13339	2.19226e-4	6.24069e-5	0.0135522	0.00657207
chr10	895721	895821	4542226	0	-	0.18	[0,0.28]	chr10	419298	60	INTRON	INTRON	LARP4B	ENSG00000107929.16	ENST00000316157.8:ENST00000690516.1:ENST00000476529.5:ENST00000406525.6:ENST00000481118.1:ENST00000412411.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	25	2	3.96122	4.0811399999999995	4.20106	0.0695895	0.0617993	0.193423	0.184298
chr10	7307049	7307149	4551893	0	-	0.23	[0,0.28]	chr10	420230	207	INTRON	INTRON	SFMBT2	ENSG00000198879.13	ENST00000397167.6:ENST00000361972.8:ENST00000684547.1:ENST00000683762.1:ENST00000673876.1:ENST00000682896.1:ENST00000379713.8:ENST00000682101.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	25	2	3.96122	4.0811399999999995	4.20106	0.0695895	0.0617993	0.193423	0.184298
chr10	21983919	21984019	4578485	0	-	0.25	[0,0.28]	chr10	421947	544	INTRON	INTRON	DNAJC1	ENSG00000136770.11	ENST00000376980.8:ENST00000476103.3:ENST00000447548.5:ENST00000376946.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	25	2	3.96122	4.0811399999999995	4.20106	0.0695895	0.0617993	0.193423	0.184298
chr10	50328021	50328121	4617718	0	-	0.18	[0,0.28]	chr10	425400	3	INTRON	INTRON	SGMS1	ENSG00000198964.14	ENST00000429490.5:ENST00000361781.7:ENST00000602619.1:ENST00000361543.3:ENST00000626236.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	25	2	3.96122	4.0811399999999995	4.20106	0.0695895	0.0617993	0.193423	0.184298
chr12	91326301	91326401	5382470	0	-	0.26	[0,0.28]	chr12	513439	491	INTRON	INTRON	ENSG00000289605	ENSG00000289605.1	ENST00000685093.1	lncRNA	lncRNA	lncRNA	lncRNA	0	25	2	3.96122	4.0811399999999995	4.20106	0.0695895	0.0617993	0.193423	0.184298
chr13	50041841	50041940	5594183	0	-	0.20202	[0,0.28]	chr13	534686	98	INTRON	INTRON	DLEU2	ENSG00000231607.14	ENST00000621282.4:ENST00000688690.1:ENST00000668305.1:ENST00000425586.5:ENST00000686946.1	lncRNA	lncRNA	lncRNA	lncRNA	0	25	2	3.96122	4.0811399999999995	4.20106	0.0695895	0.0617993	0.193423	0.184298
chr16	46817885	46817985	6479603	0	-	0.24	[0,0.28]	chr16	626823	77	INTRON	INTRON	C16orf87	ENSG00000155330.10	ENST00000285697.9:ENST00000394806.6:ENST00000565112.1:ENST00000564250.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	25	2	3.96122	4.0811399999999995	4.20106	0.0695895	0.0617993	0.193423	0.184298
chr16	47240300	47240400	6481481	0	-	0.27	[0,0.28]	chr16	626969	19	INTRON	INTRON	ITFG1	ENSG00000129636.13	ENST00000568047.5:ENST00000320640.11:ENST00000537184.6:ENST00000542691.5:ENST00000544001.6:ENST00000565262.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	25	2	3.96122	4.0811399999999995	4.20106	0.0695895	0.0617993	0.193423	0.184298
chr17	16185256	16185356	6734932	0	-	0.28	[0,0.28]	chr17	660738	129	INTRON	INTRON	NCOR1	ENSG00000141027.22	ENST00000268712.8:ENST00000395851.5:ENST00000395848.5:ENST00000411510.5:ENST00000582357.5:ENST00000436828.5:ENST00000460276.5:ENST00000585296.1:ENST00000579974.1:ENST00000430577.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	25	2	3.96122	4.0811399999999995	4.20106	0.0695895	0.0617993	0.193423	0.184298
chr19	11603011	11603111	7018073	0	+	0.28	[0,0.28]	chr19	697688	50	INTRON	INTRON	ZNF627	ENSG00000198551.10	ENST00000593279.5:ENST00000585493.5:ENST00000587939.5:ENST00000361113.10:ENST00000588174.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	25	2	3.96122	4.0811399999999995	4.20106	0.0695895	0.0617993	0.193423	0.184298
chr20	3962374	3962474	7308872	0	-	0.27	[0,0.28]	chr20	744285	137	INTRON	INTRON	RNF24	ENSG00000101236.17	ENST00000336095.10:ENST00000358395.11:ENST00000432261.6:ENST00000545616.2	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	3.96122	4.0811399999999995	4.20106	0.0695895	0.0617993	0.193423	0.184298
chr21	14999485	14999584	7431605	0	-	0.242424	[0,0.28]	chr21	757974	78	INTRON	INTRON	NRIP1	ENSG00000180530.11	ENST00000400202.5:ENST00000318948.7:ENST00000400199.5:ENST00000411932.1:ENST00000638122.1:ENST00000637963.1:ENST00000637630.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	25	2	3.96122	4.0811399999999995	4.20106	0.0695895	0.0617993	0.193423	0.184298
chr21	21378508	21378608	7382806	0	+	0.27	[0,0.28]	chr21	752659	41	INTRON	INTRON	NCAM2	ENSG00000154654.15	ENST00000400546.6:ENST00000284894.8	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	3.96122	4.0811399999999995	4.20106	0.0695895	0.0617993	0.193423	0.184298
chr3	32744454	32744554	1393721	0	+	0.23	[0,0.28]	chr3	145926	66	INTRON	INTRON	CNOT10	ENSG00000182973.20	ENST00000331889.10:ENST00000328834.10:ENST00000435630.5:ENST00000454516.7:ENST00000416457.5:ENST00000430408.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	25	2	3.96122	4.0811399999999995	4.20106	0.0695895	0.0617993	0.193423	0.184298
chr3	47023634	47023734	1680164	0	-	0.26	[0,0.28]	chr3	171469	34	INTRON	INTRON	SETD2	ENSG00000181555.22	ENST00000691544.1:ENST00000638947.2:ENST00000686876.1:ENST00000687657.1:ENST00000431180.5:ENST00000409792.4:ENST00000330022.11:ENST00000686773.1:ENST00000685005.1:ENST00000690461.1:ENST00000685505.1:ENST00000692883.1:ENST00000693321.1:ENST00000688290.1:ENST00000691902.1:ENST00000690157.1:ENST00000692362.1:ENST00000685237.1:ENST00000693738.1:ENST00000686792.1:ENST00000445387.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	25	2	3.96122	4.0811399999999995	4.20106	0.0695895	0.0617993	0.193423	0.184298
chr3	129826502	129826602	1817422	0	-	0.23	[0,0.28]	chr3	182597	1379	INTRON	INTRON	TMCC1	ENSG00000172765.18	ENST00000393238.8:ENST00000426664.6:ENST00000648771.1:ENST00000505616.5	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	3.96122	4.0811399999999995	4.20106	0.0695895	0.0617993	0.193423	0.184298
chr3	142423331	142423422	1837379	0	-	0.21978	[0,0.28]	chr3	184686	4	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	XRN1	ENSG00000114127.11	ENST00000264951.8:ENST00000392981.7:ENST00000472697.5:ENST00000463916.5:ENST00000486211.1:ENST00000477237.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	25	2	3.96122	4.0811399999999995	4.20106	0.0695895	0.0617993	0.193423	0.184298
chr4	129045050	129045150	2240803	0	-	0.27	[0,0.28]	chr4	219316	6	INTRON	INTRON	SCLT1	ENSG00000151466.12	ENST00000651532.1:ENST00000281142.10:ENST00000503215.5:ENST00000439369.6:ENST00000506368.5:ENST00000511426.5:ENST00000503401.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	25	2	3.96122	4.0811399999999995	4.20106	0.0695895	0.0617993	0.193423	0.184298
chr4	143874166	143874261	2251176	0	-	0.242105	[0,0.28]	chr4	219918	3	INTRON	INTRON	GYPE	ENSG00000197465.14	ENST00000358615.9:ENST00000506264.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	25	2	3.96122	4.0811399999999995	4.20106	0.0695895	0.0617993	0.193423	0.184298
chr5	131287325	131287425	2484869	0	+	0.25	[0,0.28]	chr5	237114	228	INTRON	INTRON	CDC42SE2	ENSG00000158985.14	ENST00000502840.5:ENST00000511432.5:ENST00000506419.5:ENST00000395246.5:ENST00000505065.2:ENST00000504701.5:ENST00000503291.5:ENST00000360515.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	25	2	3.96122	4.0811399999999995	4.20106	0.0695895	0.0617993	0.193423	0.184298
chr7	65950278	65950378	3323649	0	+	0.24	[0,0.28]	chr7	309018	11	INTRON	INTRON	VKORC1L1	ENSG00000196715.7	ENST00000360768.5:ENST00000648187.1:ENST00000648179.1:ENST00000434382.2	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	3.96122	4.0811399999999995	4.20106	0.0695895	0.0617993	0.193423	0.184298
chr7	107495740	107495840	3612343	0	-	0.26	[0,0.28]	chr7	336698	149	INTRON	INTRON	COG5	ENSG00000164597.15	ENST00000297135.9:ENST00000347053.8:ENST00000393603.7:ENST00000475638.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	25	2	3.96122	4.0811399999999995	4.20106	0.0695895	0.0617993	0.193423	0.184298
chr7	155722040	155722140	3452681	0	+	0.26	[0,0.28]	chr7	322702	32	INTRON	INTRON	RBM33	ENSG00000184863.11	ENST00000401878.8:ENST00000307403.6:ENST00000440108.5:ENST00000392761.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	25	2	3.96122	4.0811399999999995	4.20106	0.0695895	0.0617993	0.193423	0.184298
chr8	48024867	48024967	3752401	0	+	0.24	[0,0.28]	chr8	349044	159	INTRON	INTRON	UBE2V2	ENSG00000169139.12	ENST00000523432.5:ENST00000521346.5:ENST00000523111.7:ENST00000518360.5:ENST00000517630.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	25	2	3.96122	4.0811399999999995	4.20106	0.0695895	0.0617993	0.193423	0.184298
chr8	94898824	94898924	3800774	0	+	0.25	[0,0.28]	chr8	352486	25	INTRON	INTRON	NDUFAF6	ENSG00000156170.13	ENST00000523378.5:ENST00000396113.5:ENST00000519136.5	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	3.96122	4.0811399999999995	4.20106	0.0695895	0.0617993	0.193423	0.184298
chr8	129869010	129869108	4062442	0	-	0.244898	[0,0.28]	chr8	369774	4	INTRON	INTRON	CYRIB	ENSG00000153310.21	ENST00000694912.1:ENST00000519824.6:ENST00000523288.5:ENST00000519110.5:ENST00000401979.6:ENST00000523509.5:ENST00000522746.5:ENST00000517654.5:ENST00000522250.5:ENST00000519540.5:ENST00000522941.5:ENST00000519142.5:ENST00000518879.5:ENST00000522702.5:ENST00000521223.5:ENST00000520204.5:ENST00000518283.5:ENST00000523993.5:ENST00000520254.5:ENST00000519020.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	25	2	3.96122	4.0811399999999995	4.20106	0.0695895	0.0617993	0.193423	0.184298
chr9	136478408	136478508	4374993	0	-	0.2	[0,0.28]	chr9	403094	3	SS5_PROX	SS5_PROX:INTRON	SEC16A	ENSG00000148396.19	ENST00000290037.10:ENST00000684901.1:ENST00000690691.1	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	3.96122	4.0811399999999995	4.20106	0.0695895	0.0617993	0.193423	0.184298
chr16	16020618	16020717	6308472	0	+	0.424242	(0.408,0.44]	chr16	603534	36	INTRON	INTRON	ABCC1	ENSG00000103222.20	ENST00000574224.2:ENST00000678422.1:ENST00000677164.1:ENST00000399408.7:ENST00000572882.3:ENST00000399410.8:ENST00000679043.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	47	2	3.02513	4.081075	5.13702	0.0059965	0.00202889	0.0700606	0.04086
chrX	154362984	154363084	7913684	0	-	0.44	(0.408,0.44]	chrX	805773	2	SS3_PROX	SS3_PROX:INTRON	FLNA	ENSG00000196924.19	ENST00000420627.5:ENST00000422373.6:ENST00000360319.9:ENST00000369856.8:ENST00000369850.10:ENST00000676696.1:ENST00000610817.5:ENST00000673639.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	47	2	3.02513	4.081075	5.13702	0.0059965	0.00202889	0.0700606	0.04086
chrX	47161842	47161941	7655244	0	+	0.484848	(0.476,0.515]	chrX	783085	140	INTRON	INTRON	RBM10	ENSG00000182872.16	ENST00000377604.8:ENST00000345781.10:ENST00000628161.2:ENST00000329236.8	protein_coding	protein_coding	protein_coding	protein_coding	1	50	2	2.7646	4.080845	5.39709	0.0162075	2.55871e-4	0.101453	0.0142249
chr3	195280126	195280225	1894254	0	-	0.454545	(0.44,0.476]	chr3	189540	3	INTRON	INTRON	ACAP2	ENSG00000114331.16	ENST00000326793.11	protein_coding	protein_coding	protein_coding	protein_coding	1	50	2	2.9195	4.080805	5.24211	0.0102021	4.87398e-4	0.0850389	0.0199652
chr7	116211234	116211333	3382117	0	+	0.474747	(0.44,0.476]	chr7	316844	1	INTRON	INTRON	TES	ENSG00000135269.18	ENST00000461440.5:ENST00000358204.9:ENST00000455989.1:ENST00000492891.5:ENST00000496871.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	64	2	3.01782	4.0808	5.14378	0.00184943	7.8136e-4	0.0388609	0.0257169
chr1	7830261	7830361	16118	0	+	0.31	(0.28,0.32]	chr1	1427	1	SS5_PROX	SS5_PROX:INTRON	PER3	ENSG00000049246.15	ENST00000377532.8:ENST00000613533.4:ENST00000614998.4:ENST00000361923.2	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	4.03345	4.08076	4.12807	0.0704058	0.0338135	0.184298	0.146709
chr10	7365915	7366015	4552484	0	-	0.32	(0.28,0.32]	chr10	420241	4	SS3_PROX	SS3_PROX:INTRON	SFMBT2	ENSG00000198879.13	ENST00000397167.6:ENST00000361972.8:ENST00000684547.1:ENST00000683762.1:ENST00000673876.1:ENST00000682896.1:ENST00000379713.8:ENST00000682101.1:ENST00000379711.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	24	2	4.03345	4.08076	4.12807	0.0704058	0.0338135	0.184298	0.146709
chr10	118697620	118697720	4703840	0	-	0.3	(0.28,0.32]	chr10	433870	20	INTRON	INTRON	CACUL1	ENSG00000151893.15	ENST00000544392.5:ENST00000369151.8:ENST00000493518.5:ENST00000481360.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	24	2	4.03345	4.08076	4.12807	0.0704058	0.0338135	0.184298	0.146709
chr11	3784239	3784339	4895042	0	-	0.3	(0.28,0.32]	chr11	458931	17	INTRON	INTRON	NUP98	ENSG00000110713.17	ENST00000359171.8:ENST00000324932.12:ENST00000650171.1:ENST00000355260.7:ENST00000397004.8:ENST00000397007.8:ENST00000532475.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	24	2	4.03345	4.08076	4.12807	0.0704058	0.0338135	0.184298	0.146709
chr12	45812936	45813035	5123550	0	+	0.292929	(0.28,0.32]	chr12	483313	10	INTRON	INTRON	ARID2	ENSG00000189079.17	ENST00000334344.11:ENST00000422737.6	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	4.03345	4.08076	4.12807	0.0704058	0.0338135	0.184298	0.146709
chr12	46431935	46432035	5125015	0	+	0.31	(0.28,0.32]	chr12	483428	193	INTRON	INTRON	ENSG00000257261	ENSG00000257261.7	ENST00000687751.1:ENST00000667191.1:ENST00000663959.1:ENST00000666025.1:ENST00000611243.2:ENST00000666942.1:ENST00000551503.5:ENST00000657145.1	lncRNA	lncRNA	lncRNA	lncRNA	0	24	2	4.03345	4.08076	4.12807	0.0704058	0.0338135	0.184298	0.146709
chr14	69667809	69667909	5776274	0	+	0.32	(0.28,0.32]	chr14	547310	87	INTRON	INTRON	SUSD6	ENSG00000100647.8	ENST00000342745.5:ENST00000556993.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	24	2	4.03345	4.08076	4.12807	0.0704058	0.0338135	0.184298	0.146709
chr15	65258655	65258749	6206851	0	-	0.308511	(0.28,0.32]	chr15	592167	7	UTR3	UTR3:EXON_MRNA:INTRON	PARP16	ENSG00000138617.16	ENST00000559805.1:ENST00000261888.10:ENST00000444347.2:ENST00000649807.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	24	2	4.03345	4.08076	4.12807	0.0704058	0.0338135	0.184298	0.146709
chr18	3653335	3653409	6867468	0	+	0.310811	(0.28,0.32]	chr18	680398	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ENSG00000266401	ENSG00000266401.3	ENST00000668204.1:ENST00000661913.1:ENST00000686910.1	lncRNA	lncRNA	lncRNA	lncRNA	0	24	2	4.03345	4.08076	4.12807	0.0704058	0.0338135	0.184298	0.146709
chr2	11334601	11334701	1068577	0	-	0.31	(0.28,0.32]	chr2	114093	465	INTRON	INTRON	ROCK2	ENSG00000134318.15	ENST00000315872.11:ENST00000261535.7:ENST00000462366.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	24	2	4.03345	4.08076	4.12807	0.0704058	0.0338135	0.184298	0.146709
chr2	39010483	39010583	1101207	0	-	0.29	(0.28,0.32]	chr2	118226	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	SOS1	ENSG00000115904.15	ENST00000692089.1:ENST00000402219.8:ENST00000685279.1:ENST00000690876.1:ENST00000692227.1:ENST00000395038.6:ENST00000691229.1:ENST00000692620.1:ENST00000689668.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	24	2	4.03345	4.08076	4.12807	0.0704058	0.0338135	0.184298	0.146709
chr2	39415897	39415997	1104087	0	-	0.32	(0.28,0.32]	chr2	118511	362	INTRON	INTRON	MAP4K3	ENSG00000011566.15	ENST00000263881.8:ENST00000341681.9:ENST00000429397.5:ENST00000437968.1:ENST00000484274.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	24	2	4.03345	4.08076	4.12807	0.0704058	0.0338135	0.184298	0.146709
chr21	22418575	22418674	7386558	0	+	0.292929	(0.28,0.32]	chr21	752749	93	INTRON	INTRON	ENSG00000226043	ENSG00000226043.2	ENST00000444130.1	lncRNA	lncRNA	lncRNA	lncRNA	0	24	2	4.03345	4.08076	4.12807	0.0704058	0.0338135	0.184298	0.146709
chr21	39184568	39184666	7464203	0	-	0.316327	(0.28,0.32]	chr21	760353	5	UTR3	UTR3:EXON_MRNA	BRWD1	ENSG00000185658.14	ENST00000333229.6	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	4.03345	4.08076	4.12807	0.0704058	0.0338135	0.184298	0.146709
chr22	41138868	41138964	7521965	0	+	0.291667	(0.28,0.32]	chr22	768562	7	INTRON	INTRON	EP300	ENSG00000100393.14	ENST00000263253.9:ENST00000674155.1:ENST00000634690.1	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	4.03345	4.08076	4.12807	0.0704058	0.0338135	0.184298	0.146709
chr3	17459701	17459801	1627585	0	-	0.32	(0.28,0.32]	chr3	168186	308	INTRON	INTRON	TBC1D5	ENSG00000131374.15	ENST00000253692.11:ENST00000696125.1:ENST00000414318.2:ENST00000429383.8:ENST00000446818.6:ENST00000415814.6:ENST00000452492.6:ENST00000412981.5:ENST00000428355.5:ENST00000425944.5:ENST00000430169.5:ENST00000445294.5:ENST00000414349.5:ENST00000443499.6:ENST00000444756.5:ENST00000497531.5:ENST00000443386.5:ENST00000507877.5:ENST00000446863.5:ENST00000434420.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	24	2	4.03345	4.08076	4.12807	0.0704058	0.0338135	0.184298	0.146709
chr3	128088244	128088344	1812865	0	-	0.3	(0.28,0.32]	chr3	182152	4	SS3_PROX	SS3_PROX:INTRON	RUVBL1	ENSG00000175792.12	ENST00000585057.5:ENST00000472125.5:ENST00000464873.5:ENST00000322623.10:ENST00000478892.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	24	2	4.03345	4.08076	4.12807	0.0704058	0.0338135	0.184298	0.146709
chr3	179422419	179422519	1878608	0	-	0.31	(0.28,0.32]	chr3	187681	11	INTRON	INTRON	GNB4	ENSG00000114450.11	ENST00000232564.8:ENST00000676128.1:ENST00000466899.6:ENST00000674862.1:ENST00000674713.1:ENST00000468623.6:ENST00000675901.1:ENST00000674927.1:ENST00000465153.2:ENST00000497513.1	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	4.03345	4.08076	4.12807	0.0704058	0.0338135	0.184298	0.146709
chr3	197626681	197626778	1904031	0	-	0.319588	(0.28,0.32]	chr3	190769	16	INTRON	INTRON	SDHAP4	ENSG00000214135.9	ENST00000685600.1:ENST00000688268.1:ENST00000689716.1:ENST00000689038.1:ENST00000414207.5:ENST00000686003.1:ENST00000418868.6:ENST00000685331.1:ENST00000690701.1:ENST00000685536.1:ENST00000449003.6:ENST00000440535.5:ENST00000454517.1:ENST00000437008.5	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript:transcribed_unprocessed_pseudogene	0	24	2	4.03345	4.08076	4.12807	0.0704058	0.0338135	0.184298	0.146709
chr4	163139922	163140022	2281038	0	-	0.32	(0.28,0.32]	chr4	221577	3	SS5_PROX	SS5_PROX:INTRON	NAF1	ENSG00000145414.9	ENST00000509434.5:ENST00000422287.6:ENST00000274054.3:ENST00000509232.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	24	2	4.03345	4.08076	4.12807	0.0704058	0.0338135	0.184298	0.146709
chr4	163499734	163499834	2078206	0	+	0.3	(0.28,0.32]	chr4	205394	45	INTRON	INTRON	TMA16	ENSG00000198498.10	ENST00000509657.5:ENST00000513272.5:ENST00000508652.5:ENST00000511562.5:ENST00000513134.5:ENST00000358572.10:ENST00000508268.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	24	2	4.03345	4.08076	4.12807	0.0704058	0.0338135	0.184298	0.146709
chr6	68696217	68696317	2886928	0	+	0.3	(0.28,0.32]	chr6	273730	564	INTRON	INTRON	ADGRB3	ENSG00000135298.15	ENST00000370598.6:ENST00000684661.1:ENST00000546190.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	24	2	4.03345	4.08076	4.12807	0.0704058	0.0338135	0.184298	0.146709
chr6	131712084	131712184	2960949	0	+	0.32	(0.28,0.32]	chr6	278351	181	INTRON	INTRON	ENPP3	ENSG00000154269.15	ENST00000414305.5:ENST00000357639.8:ENST00000358229.6	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	4.03345	4.08076	4.12807	0.0704058	0.0338135	0.184298	0.146709
chr6	152822092	152822192	3249003	0	-	0.29	(0.28,0.32]	chr6	301915	29	INTRON	INTRON	LINC02840	ENSG00000224893.7	ENST00000666093.1:ENST00000656248.1:ENST00000670640.1:ENST00000657202.1:ENST00000659837.1:ENST00000654424.1:ENST00000456715.5:ENST00000670414.1:ENST00000663653.1:ENST00000671138.1	lncRNA	lncRNA	lncRNA	lncRNA	0	24	2	4.03345	4.08076	4.12807	0.0704058	0.0338135	0.184298	0.146709
chr7	102947633	102947733	3591106	0	-	0.3	(0.28,0.32]	chr7	335206	140	INTRON	INTRON	FBXL13	ENSG00000161040.18	ENST00000694871.1:ENST00000694870.1:ENST00000448002.6:ENST00000379305.7:ENST00000440067.3:ENST00000456695.6:ENST00000313221.8:ENST00000436908.5:ENST00000455112.7:ENST00000477915.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	24	2	4.03345	4.08076	4.12807	0.0704058	0.0338135	0.184298	0.146709
chr7	152260615	152260715	3679524	0	-	0.29	(0.28,0.32]	chr7	341597	75	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682916.1:ENST00000682280.1:ENST00000680039.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	24	2	4.03345	4.08076	4.12807	0.0704058	0.0338135	0.184298	0.146709
chr8	67248122	67248221	3962843	0	-	0.292929	(0.28,0.32]	chr8	363639	75	INTRON	INTRON	ARFGEF1	ENSG00000066777.9	ENST00000520381.5:ENST00000262215.8	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	4.03345	4.08076	4.12807	0.0704058	0.0338135	0.184298	0.146709
chr8	98600833	98600932	3997903	0	-	0.292929	(0.28,0.32]	chr8	366052	43	INTRON	INTRON	STK3	ENSG00000104375.17	ENST00000617590.1:ENST00000419617.7:ENST00000523601.5:ENST00000518582.5:ENST00000523159.5:ENST00000518165.5:ENST00000518627.5:ENST00000521649.5:ENST00000521768.5:ENST00000520653.1:ENST00000424861.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	24	2	4.03345	4.08076	4.12807	0.0704058	0.0338135	0.184298	0.146709
chr7	5408092	5408191	3471926	0	-	0.545455	(0.515,0.57]	chr7	324678	8	INTRON	INTRON	TNRC18	ENSG00000182095.15	ENST00000399537.8:ENST00000430969.6:ENST00000399434.2	protein_coding	protein_coding	protein_coding	protein_coding	1	44	2	2.83188	4.080725	5.32957	0.0108207	4.06834e-4	0.0920575	0.0185763
chr3	154313746	154313845	1843429	0	-	0.252525	[0,0.28]	chr3	185461	16	INTRON	INTRON	DHX36	ENSG00000174953.14	ENST00000496811.6:ENST00000308361.10:ENST00000329463.9:ENST00000481941.5	protein_coding	protein_coding	protein_coding	protein_coding	1	67	2	2.27119	4.080605	5.89002	0.070351	1.86278e-4	0.184298	0.0119078
chr7	158899159	158899258	3456563	0	+	0.161616	[0,0.28]	chr7	323179	75	INTRON	INTRON	DYNC2I1	ENSG00000126870.16	ENST00000407559.8:ENST00000444851.5:ENST00000467220.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	58	2	2.8569	4.08057	5.30424	0.013822	0.00584781	0.10247	0.0667594
chr5	136494631	136494731	2493688	0	+	0.49	(0.476,0.515]	chr5	238200	274	INTRON	INTRON	ENSG00000249803	ENSG00000249803.6	ENST00000653158.1:ENST00000446720.3:ENST00000665110.1:ENST00000511165.6:ENST00000666378.1:ENST00000657590.1:ENST00000658501.1:ENST00000660537.1:ENST00000659712.1	lncRNA	lncRNA	lncRNA	lncRNA	1	50	2	3.10264	4.080555	5.05847	0.00543163	0.00108081	0.0645052	0.0300133
chr6	10802467	10802536	2811228	0	+	0.478261	(0.476,0.515]	chr6	264509	3	UTR3	UTR3:EXON_MRNA:INTRON	TMEM14B	ENSG00000137210.14	ENST00000463448.5:ENST00000473166.5:ENST00000460341.5:ENST00000473807.5:ENST00000463100.5:ENST00000467229.1:ENST00000489137.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	1	50	2	3.10264	4.080555	5.05847	0.00543163	0.00108081	0.0645052	0.0300133
chr7	152211055	152211154	3679008	0	-	0.292929	(0.28,0.32]	chr7	341526	22	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000683200.1:ENST00000682283.1:ENST00000473186.5:ENST00000679882.1:ENST00000680969.1:ENST00000681033.1:ENST00000682176.1:ENST00000679645.1:ENST00000684550.1:ENST00000489110.2:ENST00000681838.1:ENST00000683490.1:ENST00000684623.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	59	2	2.62686	4.08044	5.53402	0.0289217	4.0843e-4	0.1274	0.0181306
chr1	24810006	24810106	46711	0	+	0.36	(0.35,0.378]	chr1	5776	118	INTRON	INTRON	CLIC4	ENSG00000169504.15	ENST00000488683.1:ENST00000497755.1:ENST00000374379.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	23	2	3.97032	4.0802700000000005	4.19022	0.0578667	0.0209891	0.167723	0.122348
chr1	212874910	212875009	310009	0	+	0.373737	(0.35,0.378]	chr1	35804	17	INTRON	INTRON	FLVCR1	ENSG00000162769.13	ENST00000366971.9:ENST00000419102.1:ENST00000474693.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	23	2	3.97032	4.0802700000000005	4.19022	0.0578667	0.0209891	0.167723	0.122348
chr12	57413168	57413268	5339080	0	-	0.37	(0.35,0.378]	chr12	510716	170	INTRON	INTRON	R3HDM2	ENSG00000179912.21	ENST00000402412.6:ENST00000347140.7:ENST00000634871.1:ENST00000448732.1	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	3.97032	4.0802700000000005	4.19022	0.0578667	0.0209891	0.167723	0.122348
chr12	103785947	103786047	5401243	0	-	0.37	(0.35,0.378]	chr12	515223	2	SS3_PROX	SS3_PROX:INTRON	NT5DC3	ENSG00000111696.12	ENST00000392876.8:ENST00000415849.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	23	2	3.97032	4.0802700000000005	4.19022	0.0578667	0.0209891	0.167723	0.122348
chr14	50471978	50472078	5889910	0	-	0.36	(0.35,0.378]	chr14	559229	28	INTRON	INTRON	MAP4K5	ENSG00000012983.12	ENST00000682126.1:ENST00000013125.9:ENST00000557390.6:ENST00000557210.5:ENST00000554091.5:ENST00000557578.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	23	2	3.97032	4.0802700000000005	4.19022	0.0578667	0.0209891	0.167723	0.122348
chr15	34427414	34427514	6133163	0	-	0.37	(0.35,0.378]	chr15	584282	193	INTRON	INTRON	GOLGA8A	ENSG00000175265.18	ENST00000359187.5:ENST00000569781.1:ENST00000565885.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	23	2	3.97032	4.0802700000000005	4.19022	0.0578667	0.0209891	0.167723	0.122348
chr15	41232048	41232147	6003869	0	+	0.363636	(0.35,0.378]	chr15	571184	2	INTRON	INTRON	CHP1	ENSG00000187446.12	ENST00000558351.5:ENST00000560411.5:ENST00000560784.5:ENST00000392151.6:ENST00000561280.5:ENST00000334660.10:ENST00000560397.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	23	2	3.97032	4.0802700000000005	4.19022	0.0578667	0.0209891	0.167723	0.122348
chr15	76246447	76246546	6227683	0	-	0.373737	(0.35,0.378]	chr15	594907	8	INTRON	INTRON	ETFA	ENSG00000140374.17	ENST00000690610.1:ENST00000557943.6:ENST00000692691.1:ENST00000688389.1:ENST00000687293.1:ENST00000691695.1:ENST00000685863.1:ENST00000689730.1:ENST00000687975.1:ENST00000693064.1:ENST00000688908.1:ENST00000691021.1:ENST00000433983.6:ENST00000267950.12:ENST00000685548.1:ENST00000565910.6:ENST00000688154.1:ENST00000560595.6:ENST00000560726.5:ENST00000559602.5:ENST00000560044.6:ENST00000559973.5:ENST00000559386.2:ENST00000560899.5:ENST00000685118.1:ENST00000688637.1:ENST00000559075.5:ENST00000689739.1:ENST00000691071.1:ENST00000560816.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	23	2	3.97032	4.0802700000000005	4.19022	0.0578667	0.0209891	0.167723	0.122348
chr15	89596304	89596401	6097312	0	+	0.371134	(0.35,0.378]	chr15	580309	3	INTRON	INTRON	TICRR	ENSG00000140534.14	ENST00000268138.12:ENST00000560985.5	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	3.97032	4.0802700000000005	4.19022	0.0578667	0.0209891	0.167723	0.122348
chr17	1808392	1808491	6702010	0	-	0.353535	(0.35,0.378]	chr17	656185	33	INTRON	INTRON	SMYD4	ENSG00000186532.12	ENST00000305513.12:ENST00000570368.5:ENST00000571854.5:ENST00000573937.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	23	2	3.97032	4.0802700000000005	4.19022	0.0578667	0.0209891	0.167723	0.122348
chr17	80913354	80913454	6688500	0	+	0.37	(0.35,0.378]	chr17	653534	36	INTRON	INTRON	RPTOR	ENSG00000141564.15	ENST00000306801.8:ENST00000544334.6:ENST00000575542.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	23	2	3.97032	4.0802700000000005	4.19022	0.0578667	0.0209891	0.167723	0.122348
chr2	36934091	36934191	1094279	0	-	0.36	(0.35,0.378]	chr2	117221	85	INTRON	INTRON	STRN	ENSG00000115808.12	ENST00000263918.9:ENST00000379213.3	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	3.97032	4.0802700000000005	4.19022	0.0578667	0.0209891	0.167723	0.122348
chr2	152721952	152722049	894283	0	+	0.360825	(0.35,0.378]	chr2	99115	15	EXON_MRNA	EXON_MRNA:INTRON	ARL6IP6	ENSG00000177917.12	ENST00000690727.1:ENST00000685752.1:ENST00000688293.1:ENST00000686839.1:ENST00000689155.1:ENST00000690703.1:ENST00000691702.1:ENST00000691523.1:ENST00000688012.1:ENST00000687504.1:ENST00000455875.6:ENST00000692124.1:ENST00000693573.1:ENST00000686951.1:ENST00000692399.1:ENST00000425034.6:ENST00000686080.1:ENST00000326446.10:ENST00000688171.1:ENST00000463690.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	23	2	3.97032	4.0802700000000005	4.19022	0.0578667	0.0209891	0.167723	0.122348
chr3	161246687	161246757	1546455	0	+	0.357143	(0.35,0.378]	chr3	160874	3	SS5_PROX	SS5_PROX:INTRON	NMD3	ENSG00000169251.13	ENST00000472947.5:ENST00000351193.7:ENST00000460469.1	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	3.97032	4.0802700000000005	4.19022	0.0578667	0.0209891	0.167723	0.122348
chr4	48259652	48259752	2136604	0	-	0.37	(0.35,0.378]	chr4	210612	306	INTRON	INTRON	TEC	ENSG00000135605.13	ENST00000381501.8	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	3.97032	4.0802700000000005	4.19022	0.0578667	0.0209891	0.167723	0.122348
chr4	150975931	150976030	2271378	0	-	0.353535	(0.35,0.378]	chr4	220921	465	INTRON	INTRON	LRBA	ENSG00000198589.14	ENST00000357115.9:ENST00000651943.2:ENST00000510413.5:ENST00000651035.1:ENST00000507224.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	23	2	3.97032	4.0802700000000005	4.19022	0.0578667	0.0209891	0.167723	0.122348
chr7	107912424	107912524	3379842	0	+	0.36	(0.35,0.378]	chr7	316609	57	INTRON	INTRON	DLD	ENSG00000091140.15	ENST00000417551.5:ENST00000415325.5:ENST00000440410.5:ENST00000437604.6:ENST00000205402.10:ENST00000451081.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	23	2	3.97032	4.0802700000000005	4.19022	0.0578667	0.0209891	0.167723	0.122348
chr7	123695368	123695456	3632118	0	-	0.375	(0.35,0.378]	chr7	337548	1	SS5_PROX	SS5_PROX:INTRON	WASL	ENSG00000106299.8	ENST00000223023.5	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	3.97032	4.0802700000000005	4.19022	0.0578667	0.0209891	0.167723	0.122348
chrX	107100119	107100219	7859457	0	-	0.36	(0.35,0.378]	chrX	801235	109	INTRON	INTRON	RBM41	ENSG00000089682.17	ENST00000685964.1:ENST00000372487.5:ENST00000495517.5:ENST00000372479.7:ENST00000434854.1:ENST00000475556.1:ENST00000485676.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	23	2	3.97032	4.0802700000000005	4.19022	0.0578667	0.0209891	0.167723	0.122348
chr19	18540794	18540890	7153117	0	-	0.46875	(0.44,0.476]	chr19	722925	7	INTRON	INTRON	FKBP8	ENSG00000105701.16	ENST00000597960.7:ENST00000544835.7:ENST00000222308.8:ENST00000596558.6:ENST00000608443.6:ENST00000601844.5:ENST00000597611.7:ENST00000599540.6:ENST00000594844.5:ENST00000597547.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	75	2	2.42643	4.0801300000000005	5.73383	0.0033369	1.70474e-4	0.0528877	0.0119761
chr11	33339934	33340034	4767454	0	+	0.36	(0.35,0.378]	chr11	440874	4	SS5_PROX	SS5_PROX:INTRON	HIPK3	ENSG00000110422.12	ENST00000525975.5:ENST00000303296.9:ENST00000379016.7:ENST00000456517.2	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	4.07186	4.08001	4.08816	0.046021	0.0279478	0.149888	0.137011
chr11	61443240	61443340	4796659	0	+	0.36	(0.35,0.378]	chr11	444313	45	INTRON	INTRON	ENSG00000256591:SDHAF2	ENSG00000256591.5:ENSG00000167985.7	ENST00000544025.5:ENST00000542794.5:ENST00000541135.5:ENST00000542074.1:ENST00000536670.5:ENST00000301761.7:ENST00000538594.5:ENST00000537782.5:ENST00000359614.9:ENST00000544801.5:ENST00000544880.1:ENST00000543265.1:ENST00000543044.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	23	2	4.07186	4.08001	4.08816	0.046021	0.0279478	0.149888	0.137011
chr12	95136323	95136422	5392396	0	-	0.373737	(0.35,0.378]	chr12	514145	11	INTRON	INTRON	FGD6	ENSG00000180263.14	ENST00000343958.9:ENST00000451107.3:ENST00000546711.5:ENST00000549499.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	23	2	4.07186	4.08001	4.08816	0.046021	0.0279478	0.149888	0.137011
chr13	33833150	33833250	5467506	0	+	0.37	(0.35,0.378]	chr13	523958	14	INTRON	INTRON	RFC3	ENSG00000133119.13	ENST00000434425.5:ENST00000380071.8:ENST00000616236.1	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	4.07186	4.08001	4.08816	0.046021	0.0279478	0.149888	0.137011
chr13	113192573	113192673	5651891	0	-	0.37	(0.35,0.378]	chr13	538594	12	INTRON	INTRON	PCID2	ENSG00000126226.22	ENST00000337344.9:ENST00000622406.4:ENST00000375479.6:ENST00000375477.5:ENST00000246505.9:ENST00000375459.5:ENST00000375457.2:ENST00000475433.5:ENST00000480971.5:ENST00000484641.6:ENST00000491548.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	23	2	4.07186	4.08001	4.08816	0.046021	0.0279478	0.149888	0.137011
chr15	84994540	84994640	6089057	0	+	0.37	(0.35,0.378]	chr15	579504	118	INTRON	INTRON	PDE8A	ENSG00000073417.15	ENST00000310298.8:ENST00000557957.5:ENST00000394553.6:ENST00000339708.9:ENST00000478717.5:ENST00000485596.5:ENST00000559742.5:ENST00000559086.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	23	2	4.07186	4.08001	4.08816	0.046021	0.0279478	0.149888	0.137011
chr16	74337206	74337290	6523226	0	-	0.357143	(0.35,0.378]	chr16	631570	1	SS5_PROX	SS5_PROX:INTRON	PDPR2P	ENSG00000214331.8	ENST00000566802.5:ENST00000563377.5:ENST00000565724.5	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:transcribed_unprocessed_pseudogene	0	23	2	4.07186	4.08001	4.08816	0.046021	0.0279478	0.149888	0.137011
chr2	23888899	23888997	1080573	0	-	0.357143	(0.35,0.378]	chr2	115367	1	INTRON	INTRON	ATAD2B	ENSG00000119778.15	ENST00000238789.10:ENST00000439915.1	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	4.07186	4.08001	4.08816	0.046021	0.0279478	0.149888	0.137011
chr2	177310638	177310726	1276313	0	-	0.352273	(0.35,0.378]	chr2	134728	3	SS5_PROX	SS5_PROX:INTRON	NFE2L2:ENSG00000213963	ENSG00000116044.16:ENSG00000213963.6	ENST00000464747.5:ENST00000586532.5:ENST00000397057.6:ENST00000456746.5:ENST00000430416.5:ENST00000627798.2:ENST00000625449.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	0	23	2	4.07186	4.08001	4.08816	0.046021	0.0279478	0.149888	0.137011
chr3	42610304	42610403	1406068	0	+	0.363636	(0.35,0.378]	chr3	147651	74	INTRON	INTRON	NKTR	ENSG00000114857.19	ENST00000468735.6:ENST00000460910.5:ENST00000487466.5:ENST00000429888.5:ENST00000232978.13:ENST00000442970.5:ENST00000445842.1:ENST00000478488.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	23	2	4.07186	4.08001	4.08816	0.046021	0.0279478	0.149888	0.137011
chr3	93933584	93933683	1753787	0	-	0.353535	(0.35,0.378]	chr3	177829	44	INTRON	INTRON	PROS1	ENSG00000184500.16	ENST00000394236.9:ENST00000648381.1:ENST00000648853.1:ENST00000650591.1:ENST00000348974.5:ENST00000647936.1:ENST00000407433.6:ENST00000649103.1:ENST00000472684.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	23	2	4.07186	4.08001	4.08816	0.046021	0.0279478	0.149888	0.137011
chr4	8451361	8451459	1924528	0	+	0.367347	(0.35,0.378]	chr4	193238	11	INTRON	INTRON	TRMT44	ENSG00000155275.19	ENST00000513449.6:ENST00000389737.5	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	4.07186	4.08001	4.08816	0.046021	0.0279478	0.149888	0.137011
chr4	139320976	139321076	2049886	0	+	0.37	(0.35,0.378]	chr4	203286	184	INTRON	INTRON	NAA15	ENSG00000164134.13	ENST00000296543.10:ENST00000398947.1:ENST00000482087.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	23	2	4.07186	4.08001	4.08816	0.046021	0.0279478	0.149888	0.137011
chr5	64760156	64760256	2630366	0	-	0.36	(0.35,0.378]	chr5	249958	50	INTRON	INTRON	SREK1IP1	ENSG00000153006.16	ENST00000513458.9:ENST00000495198.6:ENST00000510616.5:ENST00000506252.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	23	2	4.07186	4.08001	4.08816	0.046021	0.0279478	0.149888	0.137011
chr6	18166878	18166977	2826858	0	+	0.353535	(0.35,0.378]	chr6	265473	1	INTRON	INTRON	KDM1B	ENSG00000165097.16	ENST00000546309.6:ENST00000650836.2:ENST00000449850.2:ENST00000297792.9	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	4.07186	4.08001	4.08816	0.046021	0.0279478	0.149888	0.137011
chr6	20451468	20451568	2827945	0	+	0.37	(0.35,0.378]	chr6	265583	114	INTRON	INTRON	E2F3	ENSG00000112242.16	ENST00000346618.8:ENST00000535432.2	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	4.07186	4.08001	4.08816	0.046021	0.0279478	0.149888	0.137011
chr9	78020016	78020116	4271830	0	-	0.37	(0.35,0.378]	chr9	392880	973	INTRON	INTRON	GNAQ	ENSG00000156052.11	ENST00000286548.9:ENST00000411677.1	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	4.07186	4.08001	4.08816	0.046021	0.0279478	0.149888	0.137011
chrX	53607022	53607122	7821078	0	-	0.37	(0.35,0.378]	chrX	798111	1	SS5_PROX	SS5_PROX:INTRON	HUWE1	ENSG00000086758.16	ENST00000262854.11:ENST00000342160.7:ENST00000612484.4:ENST00000218328.12	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	23	2	4.07186	4.08001	4.08816	0.046021	0.0279478	0.149888	0.137011
chr12	132799574	132799673	5449917	0	-	0.555556	(0.515,0.57]	chr12	522063	7	INTRON	INTRON	GOLGA3	ENSG00000090615.16	ENST00000204726.9:ENST00000450791.8:ENST00000693666.1:ENST00000688114.1:ENST00000687190.1:ENST00000690511.1:ENST00000685283.1:ENST00000691696.1:ENST00000691636.1:ENST00000690897.1:ENST00000690465.1:ENST00000456883.7:ENST00000692253.1:ENST00000687502.1:ENST00000688772.1:ENST00000687479.1:ENST00000690709.1:ENST00000545875.4:ENST00000688251.1:ENST00000690573.1:ENST00000685195.1:ENST00000686425.1:ENST00000693437.1:ENST00000692831.1:ENST00000688068.1:ENST00000692951.1:ENST00000689441.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	87	2	2.31075	4.07988	5.84901	0.00124389	3.33916e-5	0.0328153	0.00487221
chr7	119840943	119841043	3629750	0	-	0.48	(0.476,0.515]	chr7	337335	397	INTRON	INTRON	LINC02476	ENSG00000225546.6	ENST00000660268.1:ENST00000431071.5:ENST00000426413.2	lncRNA	lncRNA	lncRNA	lncRNA	4	92	2	2.02889	4.079655	6.13042	0.00978617	5.46446e-6	0.0835427	0.00162138
chr22	31467774	31467874	7578178	0	-	0.35	(0.32,0.35]	chr22	775499	2	SS5_PROX	SS5_PROX:INTRON	EIF4ENIF1	ENSG00000184708.18	ENST00000344710.9:ENST00000330125.10:ENST00000397525.5:ENST00000397523.5:ENST00000423097.5	protein_coding	protein_coding	protein_coding	protein_coding	1	52	2	2.78073	4.07953	5.37833	0.01481	0.00174321	0.106702	0.0375363
chr5	32603380	32603480	2334936	0	+	0.35	(0.32,0.35]	chr5	225378	24	UTR3	UTR3:EXON_MRNA	SUB1	ENSG00000113387.12	ENST00000265073.9	protein_coding	protein_coding	protein_coding	protein_coding	1	52	2	2.78073	4.07953	5.37833	0.01481	0.00174321	0.106702	0.0375363
chr9	92270183	92270283	4287099	0	-	0.34	(0.32,0.35]	chr9	394208	2	SS3_PROX	SS3_PROX:INTRON	IARS1	ENSG00000196305.19	ENST00000375643.7:ENST00000443024.7:ENST00000447699.7:ENST00000683537.1:ENST00000684726.1:ENST00000683192.1:ENST00000683565.1:ENST00000682756.1:ENST00000684542.1:ENST00000683793.1:ENST00000683817.1:ENST00000682141.1:ENST00000682893.1:ENST00000684557.1:ENST00000498025.2:ENST00000682156.1:ENST00000627121.3:ENST00000683469.1:ENST00000683495.1:ENST00000682578.1:ENST00000682533.1:ENST00000472894.2:ENST00000684757.1:ENST00000684445.1:ENST00000683376.1:ENST00000683679.1:ENST00000683119.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	52	2	2.78073	4.07953	5.37833	0.01481	0.00174321	0.106702	0.0375363
chr11	86062359	86062459	5014776	0	-	0.53	(0.515,0.57]	chr11	473022	304	INTRON	INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000630913.2:ENST00000528398.5:ENST00000356360.9:ENST00000534412.5:ENST00000531558.1:ENST00000531930.5:ENST00000532041.5:ENST00000525162.5:ENST00000528256.1:ENST00000528411.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	230	2	3.66227	4.079445	4.49662	3.61823e-6	2.4184e-9	0.0013551	1.36504e-5
chr8	130014387	130014485	4063913	0	-	0.469388	(0.44,0.476]	chr8	369848	56	INTRON	INTRON	CYRIB	ENSG00000153310.21	ENST00000694912.1:ENST00000523288.5:ENST00000519110.5:ENST00000401979.6:ENST00000523509.5:ENST00000517654.5:ENST00000518879.5:ENST00000522702.5:ENST00000521223.5:ENST00000518283.5:ENST00000523993.5:ENST00000519020.5:ENST00000518167.5:ENST00000522361.1:ENST00000523514.1:ENST00000518285.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	47	2	3.25801	4.079005	4.9	0.00423315	0.00248185	0.0572185	0.0460771
chr7	148874646	148874745	3670667	0	-	0.292929	(0.28,0.32]	chr7	340632	34	INTRON	INTRON	EZH2	ENSG00000106462.12	ENST00000683292.1:ENST00000320356.7:ENST00000492143.5:ENST00000478654.5:ENST00000350995.6:ENST00000460911.5:ENST00000683744.1:ENST00000682317.1:ENST00000682263.1:ENST00000476773.5:ENST00000483967.5:ENST00000498186.5:ENST00000483012.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	111	2	1.87474	4.07893	6.28312	0.0115687	8.10771e-5	0.0962115	0.00807106
chr22	38723896	38723996	7514492	0	+	0.35	(0.32,0.35]	chr22	767626	2	SS3_PROX	SS3_PROX:INTRON	GTPBP1	ENSG00000100226.16	ENST00000216044.10	protein_coding	protein_coding	protein_coding	protein_coding	1	56	2	2.6321	4.07886	5.52562	0.0268	2.76065e-4	0.123349	0.0147997
chr7	155304095	155304195	3451828	0	+	0.54	(0.515,0.57]	chr7	322632	2	SS5_PROX	SS5_PROX:INTRON	INSIG1	ENSG00000186480.13	ENST00000344756.8:ENST00000340368.9:ENST00000342407.5:ENST00000476756.1	protein_coding	protein_coding	protein_coding	protein_coding	15	506	2	3.57279	4.078525	4.58426	7.4568e-9	1.39419e-10	2.92939e-5	1.29974e-6
chr2	43923266	43923366	1109852	0	-	0.43	(0.408,0.44]	chr2	118989	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	LRPPRC	ENSG00000138095.20	ENST00000260665.12:ENST00000682308.1:ENST00000683459.1:ENST00000683623.1:ENST00000683125.1:ENST00000683994.1:ENST00000684619.1:ENST00000683833.1:ENST00000682546.1:ENST00000682585.1:ENST00000683220.1:ENST00000683796.1:ENST00000682607.1:ENST00000683590.1:ENST00000684306.1:ENST00000683213.1:ENST00000682779.1:ENST00000682885.1:ENST00000684743.1:ENST00000683346.1:ENST00000683072.1:ENST00000682303.1:ENST00000683329.1:ENST00000682933.1:ENST00000684383.1:ENST00000682480.1:ENST00000684290.1:ENST00000684341.1:ENST00000682595.1:ENST00000683645.1:ENST00000683802.1:ENST00000682845.1:ENST00000682295.1:ENST00000683236.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	167	2	3.31855	4.0782799999999995	4.83801	5.49557e-5	3.80371e-7	0.0065165	3.17977e-4
chr7	75234799	75234899	3557783	0	-	0.41	(0.408,0.44]	chr7	331396	172	INTRON	INTRON	GTF2IP1	ENSG00000277053.4	ENST00000622829.4:ENST00000616377.4	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	2	64	2	3.01942	4.07822	5.13702	0.00202889	7.74413e-4	0.04086	0.0256083
chr1	22057898	22057998	42253	0	+	0.55	(0.515,0.57]	chr1	5072	17	INTRON	INTRON	ENSG00000289694:CDC42	ENSG00000289694.1:ENSG00000070831.18	ENST00000695855.1:ENST00000695856.1:ENST00000344548.8:ENST00000400259.5:ENST00000667384.2:ENST00000411827.2:ENST00000695858.1:ENST00000695857.1:ENST00000315554.14:ENST00000695859.1:ENST00000498236.1:ENST00000656825.1:ENST00000651171.1:ENST00000652582.1:ENST00000695860.1:ENST00000695796.1:ENST00000695797.1:ENST00000662562.2:ENST00000695798.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	73	2	2.54372	4.078105	5.61249	0.00205444	4.24748e-5	0.0409693	0.00526976
chr7	17926905	17927005	3496431	0	-	0.33	(0.32,0.35]	chr7	326520	192	INTRON	INTRON	SNX13	ENSG00000071189.21	ENST00000428135.7:ENST00000611725.4:ENST00000409076.6:ENST00000444712.5:ENST00000482558.5:ENST00000409604.1:ENST00000475800.5:ENST00000474067.5:ENST00000471744.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	51	2	3.07975	4.07802	5.07629	0.00554235	0.00468114	0.0674105	0.0600108
chr8	61678396	61678495	3958744	0	-	0.323232	(0.32,0.35]	chr8	363165	17	INTRON	INTRON	ASPH	ENSG00000198363.18	ENST00000379454.9:ENST00000541428.5:ENST00000522349.5:ENST00000523927.5:ENST00000445642.6:ENST00000356457.9:ENST00000519234.5:ENST00000518068.5:ENST00000517903.5:ENST00000517847.6:ENST00000522835.5:ENST00000518306.5:ENST00000517856.5:ENST00000517928.1:ENST00000389204.8:ENST00000522603.5:ENST00000379449.10:ENST00000517661.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	51	2	3.07975	4.07802	5.07629	0.00554235	0.00468114	0.0674105	0.0600108
chr21	43682978	43683078	7413004	0	+	0.52	(0.515,0.57]	chr21	755444	3	SS3_PROX	SS3_PROX:INTRON	RRP1B	ENSG00000160208.13	ENST00000340648.6	protein_coding	protein_coding	protein_coding	protein_coding	1	46	2	3.30665	4.078005	4.84936	0.00213226	0.00146032	0.041756	0.0349875
chr10	5802600	5802700	4544811	0	-	0.35	(0.32,0.35]	chr10	419801	15	INTRON	INTRON	GDI2	ENSG00000057608.17	ENST00000380191.9:ENST00000380181.7:ENST00000456041.5:ENST00000418688.5:ENST00000608581.5:ENST00000380127.5:ENST00000609712.1	protein_coding	protein_coding	protein_coding	protein_coding	1	51	2	3.0247	4.077965000000001	5.13123	0.00671684	0.00394704	0.0738715	0.0548259
chr2	169599576	169599675	906623	0	+	0.363636	(0.35,0.378]	chr2	100021	65	INTRON	INTRON	PPIG	ENSG00000138398.17	ENST00000678088.1:ENST00000677392.1:ENST00000433207.6:ENST00000679324.1:ENST00000414307.6:ENST00000676508.1:ENST00000260970.8:ENST00000678695.1:ENST00000409714.7:ENST00000530152.5:ENST00000677750.1:ENST00000676557.1:ENST00000678721.1:ENST00000462903.6:ENST00000676756.1:ENST00000679107.1:ENST00000678499.1:ENST00000678638.1:ENST00000448752.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	50	2	3.36514	4.077965	4.79079	0.00846427	0.00173699	0.0776969	0.03851
chrX	11386970	11387070	7761224	0	-	0.4	(0.378,0.408]	chrX	793522	512	INTRON	INTRON	ARHGAP6	ENSG00000047648.23	ENST00000380736.5:ENST00000337414.9:ENST00000495242.5:ENST00000489330.6:ENST00000380718.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	48	2	2.92665	4.077945	5.22924	0.0086017	0.00172721	0.083729	0.0374701
chr22	19091786	19091886	7551708	0	-	0.45	(0.44,0.476]	chr22	771903	19	INTRON	INTRON	DGCR2	ENSG00000070413.20	ENST00000537045.5:ENST00000545799.5:ENST00000263196.12:ENST00000389262.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	49	2	2.66433	4.07765	5.49097	0.0194358	4.8612e-4	0.119831	0.0203841
chr16	87863836	87863935	6539041	0	-	0.565657	(0.515,0.57]	chr16	633647	3	INTRON	INTRON	SLC7A5	ENSG00000103257.9	ENST00000261622.5	protein_coding	protein_coding	protein_coding	protein_coding	1	45	2	2.90311	4.07747	5.25183	0.0094233	2.6074e-4	0.0817766	0.014326
chr1	162571016	162571115	238413	0	+	0.40404	(0.378,0.408]	chr1	28704	43	INTRON	INTRON	UAP1	ENSG00000117143.14	ENST00000367925.6:ENST00000367926.9	protein_coding	protein_coding	protein_coding	protein_coding	1	52	2	3.10274	4.0768249999999995	5.05091	0.00586642	0.00118558	0.0668095	0.031662
chr17	35009575	35009675	6757154	0	-	0.31	(0.28,0.32]	chr17	664084	37	UTR3	UTR3:EXON_MRNA	RFFL	ENSG00000092871.17	ENST00000315249.11:ENST00000394597.7:ENST00000584655.5	protein_coding	protein_coding	protein_coding	protein_coding	1	55	2	3.35108	4.076815	4.80255	0.0137406	0.00221345	0.0949306	0.0435144
chr7	116867533	116867632	3385412	0	+	0.373737	(0.35,0.378]	chr7	317031	45	INTRON	INTRON	CAPZA2	ENSG00000198898.15	ENST00000464223.5:ENST00000484325.1:ENST00000414148.6:ENST00000361183.8:ENST00000449080.5:ENST00000639546.1:ENST00000426421.5:ENST00000490693.5:ENST00000417431.5:ENST00000461878.5:ENST00000466023.1:ENST00000464669.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	49	2	3.05136	4.07681	5.10226	0.00578894	0.00327038	0.0684334	0.0508595
chr9	33844464	33844563	4110498	0	+	0.363636	(0.35,0.378]	chr9	374686	135	INTRON	INTRON	UBE2R2	ENSG00000107341.5	ENST00000263228.4	protein_coding	protein_coding	protein_coding	protein_coding	1	49	2	3.05136	4.07681	5.10226	0.00578894	0.00327038	0.0684334	0.0508595
chr4	78792196	78792296	1981543	0	+	0.26	[0,0.28]	chr4	198463	151	INTRON	INTRON	BMP2K	ENSG00000138756.19	ENST00000389010.7:ENST00000502613.3:ENST00000502871.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	95	2	2.06426	4.076775	6.08929	0.0168952	4.45295e-4	0.110899	0.0194896
chr7	102132773	102132873	3369530	0	+	0.49	(0.476,0.515]	chr7	315274	71	INTRON	INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000560541.5:ENST00000558836.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	47	2	2.94692	4.076685	5.20645	0.00794331	0.00136049	0.0797304	0.0336321
chr5	71472582	71472682	2383747	0	+	0.28	[0,0.28]	chr5	229887	17	INTRON	INTRON	BDP1	ENSG00000145734.20	ENST00000358731.9:ENST00000508917.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	58	2	3.09587	4.076675	5.05748	0.0113653	0.00651565	0.0886611	0.0735232
chr16	89731240	89731335	6421769	0	+	0.505263	(0.476,0.515]	chr16	616586	16	INTRON	INTRON	ZNF276	ENSG00000158805.12	ENST00000562530.5:ENST00000289816.9:ENST00000568064.5:ENST00000563983.5:ENST00000443381.7:ENST00000568295.5:ENST00000561536.5:ENST00000563541.1:ENST00000569426.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	50	2	2.56868	4.076465	5.58425	0.0256676	2.97744e-4	0.133676	0.0160246
chr15	29747260	29747360	6124657	0	-	0.25	[0,0.28]	chr15	583536	41	INTRON	INTRON	TJP1	ENSG00000104067.17	ENST00000346128.10:ENST00000614355.5:ENST00000400011.6:ENST00000356107.11:ENST00000677774.1:ENST00000545208.6	protein_coding	protein_coding	protein_coding	protein_coding	1	58	2	2.80396	4.07643	5.3489	0.0161429	0.00514751	0.109464	0.062965
chr1	32032987	32033087	62837	0	+	0.24	[0,0.28]	chr1	7952	4	SS3_PROX	SS3_PROX:INTRON	KHDRBS1	ENSG00000121774.18	ENST00000327300.12:ENST00000307714.12:ENST00000492989.1:ENST00000484270.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	78	2	2.52489	4.07641	5.62793	0.0084136	0.0022037	0.082518	0.0417893
chr3	5156329	5156429	1353916	0	+	0.37	(0.35,0.378]	chr3	142361	274	INTRON	INTRON	ARL8B	ENSG00000134108.14	ENST00000429403.5:ENST00000256496.8:ENST00000455168.5:ENST00000444332.1:ENST00000419534.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	80	2	2.66007	4.076325000000001	5.49258	0.00123668	8.19894e-4	0.0326427	0.0264086
chr16	87735234	87735334	6538362	0	-	0.44	(0.408,0.44]	chr16	633530	42	INTRON	INTRON	KLHDC4	ENSG00000104731.14	ENST00000567298.5:ENST00000270583.10:ENST00000347925.9:ENST00000353170.9:ENST00000316853.10:ENST00000566349.5:ENST00000562155.5:ENST00000622456.4:ENST00000562261.1:ENST00000566661.5:ENST00000567513.1:ENST00000564484.5:ENST00000565328.5:ENST00000569747.5:ENST00000564396.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	51	2	3.15414	4.076255	4.99837	0.00469847	0.00131369	0.0600108	0.0333932
chr6	147267567	147267667	2989344	0	+	0.43	(0.408,0.44]	chr6	280030	4	SS5_PROX	SS5_PROX:INTRON	STXBP5	ENSG00000164506.15	ENST00000321680.11:ENST00000367481.7:ENST00000546097.5:ENST00000367480.7	protein_coding	protein_coding	protein_coding	protein_coding	1	51	2	3.15414	4.076255	4.99837	0.00469847	0.00131369	0.0600108	0.0333932
chr22	40788662	40788761	7590066	0	-	0.313131	(0.28,0.32]	chr22	777172	37	INTRON	INTRON	SLC25A17	ENSG00000100372.15	ENST00000544408.5:ENST00000435456.7:ENST00000491545.5:ENST00000263255.10:ENST00000447566.5:ENST00000420970.5:ENST00000430221.5:ENST00000427084.5:ENST00000458600.5:ENST00000443810.5:ENST00000412879.5:ENST00000426396.5:ENST00000434193.5:ENST00000449676.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	72	2	2.63379	4.076235	5.51868	0.00503861	0.00162747	0.0646039	0.0367966
chr7	23199057	23199157	3289808	0	+	0.3	(0.28,0.32]	chr7	305574	2	SS3_PROX	SS3_PROX:INTRON	NUP42	ENSG00000136243.18	ENST00000485250.5:ENST00000438012.5:ENST00000258742.10:ENST00000413919.1:ENST00000437140.5:ENST00000477844.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	72	2	2.63379	4.076235	5.51868	0.00503861	0.00162747	0.0646039	0.0367966
chr1	226970099	226970198	328864	0	+	0.525253	(0.515,0.57]	chr1	37923	40	INTRON	INTRON	COQ8A	ENSG00000163050.18	ENST00000366778.5:ENST00000366777.4:ENST00000478406.5:ENST00000489044.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	58	2	3.04798	4.07623	5.10448	0.0010345	5.9198e-4	0.029231300000000002	0.0221485
chr1	235247995	235248093	663056	0	-	0.295918	(0.28,0.32]	chr1	78528	11	INTRON	INTRON	ARID4B	ENSG00000054267.22	ENST00000349213.7:ENST00000366603.6:ENST00000264183.9:ENST00000421364.5:ENST00000491632.5:ENST00000418304.1:ENST00000466653.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	24	2	4.01002	4.07608	4.14214	0.0579756	0.0434868	0.167723	0.162255
chr1	235401787	235401887	340018	0	+	0.32	(0.28,0.32]	chr1	39556	2	SS5_PROX	SS5_PROX:INTRON	TBCE	ENSG00000285053.1:ENSG00000284770.2	ENST00000644055.1:ENST00000645655.1:ENST00000647428.1:ENST00000643418.1:ENST00000646624.1:ENST00000647186.1:ENST00000646528.1:ENST00000645351.1:ENST00000643410.1:ENST00000645205.1:ENST00000645836.1:ENST00000642503.1:ENST00000646281.1:ENST00000645069.1:ENST00000644680.1:ENST00000645578.1:ENST00000642431.1:ENST00000644604.1:ENST00000651186.1:ENST00000643125.1:ENST00000406207.5:ENST00000642463.1:ENST00000645899.1:ENST00000647233.1:ENST00000642926.1:ENST00000644578.1:ENST00000647418.1:ENST00000645372.1:ENST00000645582.1:ENST00000643994.1:ENST00000647407.1:ENST00000642610.2:ENST00000644037.1:ENST00000646463.1:ENST00000366601.8:ENST00000643524.1:ENST00000646536.1:ENST00000643142.1:ENST00000644838.1:ENST00000646286.1:ENST00000646186.1:ENST00000643615.1:ENST00000543662.4:ENST00000646848.1:ENST00000647332.1:ENST00000647489.1:ENST00000644625.1:ENST00000646384.1:ENST00000645551.1:ENST00000646821.1:ENST00000472011.6:ENST00000643238.1:ENST00000646104.1:ENST00000645662.1:ENST00000643993.1:ENST00000645964.1:ENST00000642339.1:ENST00000644217.1:ENST00000642372.1:ENST00000646929.1:ENST00000644265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	24	2	4.01002	4.07608	4.14214	0.0579756	0.0434868	0.167723	0.162255
chr10	48367453	48367553	4431598	0	+	0.3	(0.28,0.32]	chr10	408575	24	INTRON	INTRON	MAPK8	ENSG00000107643.17	ENST00000395611.7:ENST00000432379.5:ENST00000374189.6:ENST00000429041.6:ENST00000374179.8:ENST00000426557.5:ENST00000476134.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	24	2	4.01002	4.07608	4.14214	0.0579756	0.0434868	0.167723	0.162255
chr11	13722059	13722159	4742860	0	+	0.29	(0.28,0.32]	chr11	439216	2	SS5_PROX	SS5_PROX:INTRON	FAR1	ENSG00000197601.13	ENST00000354817.8:ENST00000532502.1	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	4.01002	4.07608	4.14214	0.0579756	0.0434868	0.167723	0.162255
chr11	14316212	14316312	4917242	0	-	0.31	(0.28,0.32]	chr11	460800	75	INTRON	INTRON	RRAS2	ENSG00000133818.14	ENST00000256196.9:ENST00000537760.5:ENST00000529237.5:ENST00000534746.5:ENST00000526063.5:ENST00000532814.5:ENST00000531807.5:ENST00000532950.5:ENST00000531421.5:ENST00000526717.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	24	2	4.01002	4.07608	4.14214	0.0579756	0.0434868	0.167723	0.162255
chr11	108878919	108879019	4860801	0	+	0.32	(0.28,0.32]	chr11	453572	102	INTRON	INTRON	DDX10	ENSG00000178105.12	ENST00000690021.1:ENST00000686283.1:ENST00000322536.8:ENST00000648124.1:ENST00000688583.1:ENST00000686617.1:ENST00000688976.1:ENST00000687072.1:ENST00000526794.1:ENST00000692839.1:ENST00000689812.1:ENST00000690056.1:ENST00000690248.1:ENST00000530116.1:ENST00000524979.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	24	2	4.01002	4.07608	4.14214	0.0579756	0.0434868	0.167723	0.162255
chr11	110107321	110107421	4861566	0	+	0.3	(0.28,0.32]	chr11	453592	135	INTRON	INTRON	ZC3H12C	ENSG00000149289.11	ENST00000278590.8	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	4.01002	4.07608	4.14214	0.0579756	0.0434868	0.167723	0.162255
chr12	74140105	74140205	5366840	0	-	0.31	(0.28,0.32]	chr12	512084	65	INTRON	INTRON	LINC02882	ENSG00000251138.7	ENST00000663261.1:ENST00000665907.1:ENST00000669556.1:ENST00000653134.1:ENST00000549905.5	lncRNA	lncRNA	lncRNA	lncRNA	0	24	2	4.01002	4.07608	4.14214	0.0579756	0.0434868	0.167723	0.162255
chr13	32671224	32671324	5466165	0	+	0.29	(0.28,0.32]	chr13	523751	30	INTRON	INTRON	PDS5B	ENSG00000083642.19	ENST00000315596.15:ENST00000498550.5:ENST00000450460.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	24	2	4.01002	4.07608	4.14214	0.0579756	0.0434868	0.167723	0.162255
chr14	99444894	99444994	5966864	0	-	0.3	(0.28,0.32]	chr14	566915	306	INTRON	INTRON	SETD3	ENSG00000183576.13	ENST00000331768.10:ENST00000446066.5:ENST00000453764.5:ENST00000329331.7:ENST00000630307.2:ENST00000436070.6:ENST00000357563.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	24	2	4.01002	4.07608	4.14214	0.0579756	0.0434868	0.167723	0.162255
chr15	58701175	58701274	6193028	0	-	0.30303	(0.28,0.32]	chr15	589976	24	INTRON	INTRON	ADAM10	ENSG00000137845.15	ENST00000260408.8:ENST00000402627.5:ENST00000561288.1:ENST00000559053.1:ENST00000558733.5:ENST00000439637.5:ENST00000497846.5:ENST00000558004.1:ENST00000560608.5:ENST00000561149.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	24	2	4.01002	4.07608	4.14214	0.0579756	0.0434868	0.167723	0.162255
chr15	95801813	95801913	6109994	0	+	0.31	(0.28,0.32]	chr15	581807	98	INTRON	INTRON	ENSG00000275016	ENSG00000275016.5	ENST00000612595.2:ENST00000667774.1:ENST00000616588.4:ENST00000656202.1	lncRNA	lncRNA	lncRNA	lncRNA	0	24	2	4.01002	4.07608	4.14214	0.0579756	0.0434868	0.167723	0.162255
chr16	69461186	69461278	6379945	0	+	0.304348	(0.28,0.32]	chr16	613152	1	INTRON	INTRON	CYB5B	ENSG00000103018.18	ENST00000686649.1:ENST00000684784.1:ENST00000691260.1:ENST00000689149.1:ENST00000692677.1:ENST00000307892.13:ENST00000688840.1:ENST00000515314.7:ENST00000687677.1:ENST00000568237.2:ENST00000561792.7:ENST00000687780.1:ENST00000692523.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	24	2	4.01002	4.07608	4.14214	0.0579756	0.0434868	0.167723	0.162255
chr17	41971322	41971417	6610787	0	+	0.305263	(0.28,0.32]	chr17	643926	12	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CNP	ENSG00000173786.17	ENST00000472031.1:ENST00000393892.8:ENST00000393888.1:ENST00000592861.1:ENST00000592105.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	24	2	4.01002	4.07608	4.14214	0.0579756	0.0434868	0.167723	0.162255
chr17	67829228	67829327	6667738	0	+	0.30303	(0.28,0.32]	chr17	650544	25	INTRON	INTRON	BPTF	ENSG00000171634.19	ENST00000306378.11:ENST00000544778.6:ENST00000321892.8:ENST00000342579.8:ENST00000644067.1:ENST00000424123.7	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	4.01002	4.07608	4.14214	0.0579756	0.0434868	0.167723	0.162255
chr18	731938	732037	6939888	0	-	0.313131	(0.28,0.32]	chr18	686455	70	INTRON	INTRON	YES1	ENSG00000176105.14	ENST00000584307.5:ENST00000314574.5:ENST00000577961.5	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	4.01002	4.07608	4.14214	0.0579756	0.0434868	0.167723	0.162255
chr2	94942934	94943033	1177196	0	-	0.282828	(0.28,0.32]	chr2	125602	72	INTRON	INTRON	ENSG00000259848	ENSG00000259848.9	ENST00000568768.5:ENST00000582835.1:ENST00000652556.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	24	2	4.01002	4.07608	4.14214	0.0579756	0.0434868	0.167723	0.162255
chr2	174120982	174121082	1269573	0	-	0.29	(0.28,0.32]	chr2	134263	386	INTRON	INTRON	OLA1	ENSG00000138430.16	ENST00000284719.8:ENST00000344357.9:ENST00000428402.6:ENST00000409546.5:ENST00000392560.6:ENST00000462000.1:ENST00000429575.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	24	2	4.01002	4.07608	4.14214	0.0579756	0.0434868	0.167723	0.162255
chr21	22328200	22328300	7385650	0	+	0.31	(0.28,0.32]	chr21	752727	1150	INTRON	INTRON	ENSG00000226043	ENSG00000226043.2	ENST00000667099.1:ENST00000654607.1:ENST00000444130.1	lncRNA	lncRNA	lncRNA	lncRNA	0	24	2	4.01002	4.07608	4.14214	0.0579756	0.0434868	0.167723	0.162255
chr3	15762737	15762837	1623467	0	-	0.29	(0.28,0.32]	chr3	168003	63	INTRON	INTRON	ANKRD28	ENSG00000206560.12	ENST00000399451.6:ENST00000624145.3:ENST00000683139.1:ENST00000412318.5:ENST00000497037.5:ENST00000451422.1:ENST00000498524.5:ENST00000439830.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	24	2	4.01002	4.07608	4.14214	0.0579756	0.0434868	0.167723	0.162255
chr3	195370940	195371040	1895190	0	-	0.31	(0.28,0.32]	chr3	189674	128	INTRON	INTRON	ACAP2	ENSG00000114331.16	ENST00000326793.11:ENST00000635383.1:ENST00000480906.5:ENST00000481463.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	24	2	4.01002	4.07608	4.14214	0.0579756	0.0434868	0.167723	0.162255
chr4	70829209	70829305	2155714	0	-	0.291667	(0.28,0.32]	chr4	212381	8	INTRON	INTRON	GRSF1	ENSG00000132463.15	ENST00000254799.11:ENST00000505068.5:ENST00000499044.6:ENST00000502323.5:ENST00000514161.5:ENST00000506453.1:ENST00000508091.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	24	2	4.01002	4.07608	4.14214	0.0579756	0.0434868	0.167723	0.162255
chr4	169637672	169637770	2080048	0	+	0.306122	(0.28,0.32]	chr4	205609	12	INTRON	INTRON	CLCN3	ENSG00000109572.15	ENST00000511092.5:ENST00000347613.8:ENST00000360642.7:ENST00000512813.5:ENST00000513761.6:ENST00000506924.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	24	2	4.01002	4.07608	4.14214	0.0579756	0.0434868	0.167723	0.162255
chr5	64755170	64755270	2630316	0	-	0.32	(0.28,0.32]	chr5	249957	4	SS3_PROX	SS3_PROX:INTRON	SREK1IP1	ENSG00000153006.16	ENST00000513458.9:ENST00000495198.6:ENST00000510616.5:ENST00000506252.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	24	2	4.01002	4.07608	4.14214	0.0579756	0.0434868	0.167723	0.162255
chr6	8020826	8020924	3054116	0	-	0.306122	(0.28,0.32]	chr6	284067	29	INTRON	INTRON	BLOC1S5	ENSG00000188428.20	ENST00000397457.7:ENST00000244777.6:ENST00000627748.2:ENST00000486432.1:ENST00000543936.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	24	2	4.01002	4.07608	4.14214	0.0579756	0.0434868	0.167723	0.162255
chr6	68766399	68766499	2887630	0	+	0.3	(0.28,0.32]	chr6	273730	1266	INTRON	INTRON	ADGRB3	ENSG00000135298.15	ENST00000370598.6:ENST00000684661.1:ENST00000546190.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	24	2	4.01002	4.07608	4.14214	0.0579756	0.0434868	0.167723	0.162255
chr7	10589464	10589564	3482674	0	-	0.3	(0.28,0.32]	chr7	325772	275	INTRON	INTRON	MGC4859	ENSG00000283117.1	ENST00000634803.1	lncRNA	lncRNA	lncRNA	lncRNA	0	24	2	4.01002	4.07608	4.14214	0.0579756	0.0434868	0.167723	0.162255
chr7	50369053	50369151	3317350	0	+	0.285714	(0.28,0.32]	chr7	308266	8	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	IKZF1	ENSG00000185811.20	ENST00000645066.1:ENST00000646110.1:ENST00000331340.8:ENST00000413698.5:ENST00000349824.8:ENST00000343574.9:ENST00000357364.8:ENST00000440768.6:ENST00000346667.8:ENST00000615491.4:ENST00000359197.9:ENST00000439701.2:ENST00000438033.5:ENST00000492782.6:ENST00000462201.1:ENST00000471793.1:ENST00000426121.1:ENST00000492119.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	24	2	4.01002	4.07608	4.14214	0.0579756	0.0434868	0.167723	0.162255
chr7	87012649	87012749	3564961	0	-	0.31	(0.28,0.32]	chr7	332199	468	INTRON	INTRON	ELAPOR2	ENSG00000164659.15	ENST00000450689.7:ENST00000444627.5:ENST00000423294.5	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	4.01002	4.07608	4.14214	0.0579756	0.0434868	0.167723	0.162255
chr7	135577228	135577295	3428513	0	+	0.298507	(0.28,0.32]	chr7	319644	1	SS5_PROX	SS5_PROX:INTRON	NUP205	ENSG00000155561.15	ENST00000285968.11	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	4.01002	4.07608	4.14214	0.0579756	0.0434868	0.167723	0.162255
chr8	30078456	30078556	3931358	0	-	0.3	(0.28,0.32]	chr8	360096	2	SS3_PROX	SS3_PROX:INTRON	SARAF	ENSG00000133872.14	ENST00000256255.11:ENST00000545648.2:ENST00000518174.5:ENST00000521265.5:ENST00000520303.5:ENST00000518340.1:ENST00000522794.1:ENST00000522055.1:ENST00000523761.1:ENST00000517569.1:ENST00000521083.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	24	2	4.01002	4.07608	4.14214	0.0579756	0.0434868	0.167723	0.162255
chr8	99443719	99443819	3815599	0	+	0.31	(0.28,0.32]	chr8	353231	2	SS3_PROX	SS3_PROX:INTRON	VPS13B	ENSG00000132549.20	ENST00000496144.5:ENST00000683334.1:ENST00000357162.7:ENST00000358544.7:ENST00000683619.1:ENST00000682153.1:ENST00000682358.1:ENST00000682145.1:ENST00000355155.6:ENST00000682234.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	24	2	4.01002	4.07608	4.14214	0.0579756	0.0434868	0.167723	0.162255
chr8	115656780	115656879	4031545	0	-	0.292929	(0.28,0.32]	chr8	367988	191	INTRON	INTRON	TRPS1	ENSG00000104447.13	ENST00000395715.8:ENST00000640765.1:ENST00000220888.9:ENST00000520276.5:ENST00000519674.1:ENST00000517323.2:ENST00000395713.6:ENST00000519815.5:ENST00000422939.1:ENST00000451156.1	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	4.01002	4.07608	4.14214	0.0579756	0.0434868	0.167723	0.162255
chr9	96404684	96404783	4295235	0	-	0.292929	(0.28,0.32]	chr9	394970	60	INTRON	INTRON	ZNF367	ENSG00000165244.7	ENST00000375256.5	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	4.01002	4.07608	4.14214	0.0579756	0.0434868	0.167723	0.162255
chrX	130212901	130213000	7888152	0	-	0.30303	(0.28,0.32]	chrX	803190	28	INTRON	INTRON	ZNF280C	ENSG00000056277.16	ENST00000370978.9	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	4.01002	4.07608	4.14214	0.0579756	0.0434868	0.167723	0.162255
chr20	47547998	47548097	7281458	0	+	0.414141	(0.408,0.44]	chr20	740469	456	INTRON	INTRON	NCOA3	ENSG00000124151.19	ENST00000371998.8:ENST00000372004.7:ENST00000371997.3	protein_coding	protein_coding	protein_coding	protein_coding	1	47	2	2.96007	4.076045000000001	5.19202	0.00753901	0.0016671	0.0773151	0.0369207
chr5	37361216	37361315	2602668	0	-	0.434343	(0.408,0.44]	chr5	247515	27	INTRON	INTRON	NUP155	ENSG00000113569.16	ENST00000231498.8:ENST00000381843.6:ENST00000513532.1	protein_coding	protein_coding	protein_coding	protein_coding	1	47	2	2.96007	4.076045000000001	5.19202	0.00753901	0.0016671	0.0773151	0.0369207
chr5	176946482	176946582	2776323	0	-	0.41	(0.408,0.44]	chr5	261532	26	INTRON	INTRON	UIMC1	ENSG00000087206.17	ENST00000377227.8:ENST00000511320.6:ENST00000506128.5:ENST00000512031.5:ENST00000510698.2:ENST00000503273.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	47	2	2.96007	4.076045000000001	5.19202	0.00753901	0.0016671	0.0773151	0.0369207
chr7	95412577	95412660	3573976	0	-	0.349398	(0.32,0.35]	chr7	332932	1	SS3_PROX	SS3_PROX:INTRON	PON2	ENSG00000105854.13	ENST00000222572.8:ENST00000633531.1:ENST00000455123.5:ENST00000433091.6:ENST00000633192.1:ENST00000446142.5:ENST00000469926.5:ENST00000491069.5:ENST00000490778.5:ENST00000632034.1:ENST00000493290.5:ENST00000478801.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	51	2	3.13277	4.07597	5.01917	0.0055659	0.00458313	0.0648867	0.0622676
chr11	93742951	93743050	4848509	0	+	0.333333	(0.32,0.35]	chr11	452226	3	INTRON	INTRON	C11orf54	ENSG00000182919.15	ENST00000528288.5:ENST00000617482.4:ENST00000540113.5:ENST00000331239.8:ENST00000533585.5:ENST00000528099.5:ENST00000530620.5:ENST00000354421.8:ENST00000527003.5:ENST00000531650.5:ENST00000530279.5	protein_coding	protein_coding	protein_coding	protein_coding	1	51	2	2.96746	4.075805	5.18415	0.00815799	0.00333629	0.0810802	0.0512081
chr12	76048994	76049062	5369837	0	-	0.338235	(0.32,0.35]	chr12	512247	1	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	NAP1L1	ENSG00000187109.15	ENST00000618691.5:ENST00000552056.5:ENST00000393263.7:ENST00000431879.7:ENST00000552147.5:ENST00000547773.5:ENST00000552013.1:ENST00000544816.5:ENST00000542344.5:ENST00000535020.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	51	2	2.96746	4.075805	5.18415	0.00815799	0.00333629	0.0810802	0.0512081
chr22	17972217	17972317	7550147	0	-	0.33	(0.32,0.35]	chr22	771756	650	INTRON	INTRON	MICAL3	ENSG00000243156.9	ENST00000441493.7:ENST00000672019.1:ENST00000495076.5:ENST00000424046.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	51	2	2.96746	4.075805	5.18415	0.00815799	0.00333629	0.0810802	0.0512081
chr3	48526268	48526367	1688600	0	-	0.545455	(0.515,0.57]	chr3	172531	2	INTRON	INTRON	PFKFB4	ENSG00000114268.12	ENST00000232375.8:ENST00000490115.5:ENST00000383734.6:ENST00000416568.5:ENST00000417753.5:ENST00000445633.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	43	2	3.31388	4.075760000000001	4.83764	0.00279527	0.00174704	0.0469265	0.0386026
chrX	107162484	107162584	7860053	0	-	0.34	(0.32,0.35]	chrX	801294	79	INTRON	INTRON	NUP62CL	ENSG00000198088.10	ENST00000372466.8:ENST00000484614.5:ENST00000421752.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	53	2	3.45772	4.075760000000001	4.6938	0.0137794	0.00128487	0.0949306	0.0333518
chr7	128543127	128543227	3407475	0	+	0.27	[0,0.28]	chr7	318333	90	INTRON	INTRON	ENSG00000280828	ENSG00000280828.1	ENST00000479267.2	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	5	120	2	1.8887	4.075705	6.26271	0.0123003	2.29235e-4	0.0971033	0.0138892
chr22	19102664	19102764	7551817	0	-	0.49	(0.476,0.515]	chr22	771903	128	INTRON	INTRON	DGCR2	ENSG00000070413.20	ENST00000537045.5:ENST00000545799.5:ENST00000263196.12:ENST00000389262.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	49	2	2.65268	4.075675	5.49867	0.0201975	4.28561e-4	0.121243	0.0189958
chrX	3904979	3905079	7747645	0	-	0.58	(0.57,1]	chrX	793155	3	SS5_PROX	SS5_PROX:INTRON	ENSG00000285756	ENSG00000285756.2	ENST00000650538.1:ENST00000451781.1	lncRNA	lncRNA	lncRNA	lncRNA	3	52	2	2.94667	4.075315	5.20396	1.7758e-4	5.65393e-5	0.0121697	0.00613846
chr15	92978800	92978883	6104509	0	+	0.361446	(0.35,0.378]	chr15	581530	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CHD2	ENSG00000173575.22	ENST00000626874.2:ENST00000394196.9:ENST00000635856.1:ENST00000637572.1:ENST00000636881.1:ENST00000628118.1:ENST00000625463.1:ENST00000636306.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	66	2	2.49643	4.0753	5.65417	0.00752974	4.33402e-4	0.0773151	0.0190829
chr17	21038632	21038732	6743125	0	-	0.31	(0.28,0.32]	chr17	662067	96	INTRON	INTRON	USP22	ENSG00000124422.12	ENST00000261497.9:ENST00000537526.6:ENST00000455117.6:ENST00000579645.5:ENST00000476111.5:ENST00000584538.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	54	2	3.22074	4.0750150000000005	4.92929	0.0098607	0.00362783	0.0838128	0.055479
chr11	70274622	70274722	4820449	0	+	0.37	(0.35,0.378]	chr11	449381	18	INTRON	INTRON	PPFIA1	ENSG00000131626.19	ENST00000253925.12:ENST00000389547.7:ENST00000532504.5:ENST00000530746.1:ENST00000532024.1:ENST00000648755.1:ENST00000644155.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	49	2	3.16371	4.07466	4.98561	0.00474226	0.00383956	0.0600445	0.0562562
chr5	179581412	179581512	2560089	0	+	0.32	(0.28,0.32]	chr5	244746	4	SS5_PROX	SS5_PROX:INTRON	RUFY1	ENSG00000176783.15	ENST00000319449.9:ENST00000393448.6:ENST00000393438.6:ENST00000437570.6:ENST00000508609.5:ENST00000514238.2:ENST00000502434.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	72	2	2.67153	4.07466	5.47779	0.00436402	0.00187048	0.060356	0.0390476
chr8	102341672	102341772	4012036	0	-	0.37	(0.35,0.378]	chr8	367197	119	INTRON	INTRON	UBR5	ENSG00000104517.13	ENST00000520539.6:ENST00000220959.8:ENST00000521922.5	protein_coding	protein_coding	protein_coding	protein_coding	1	49	2	3.16371	4.07466	4.98561	0.00474226	0.00383956	0.0600445	0.0562562
chr10	75214470	75214570	4464375	0	+	0.38	(0.378,0.408]	chr10	411817	4	SS5_PROX	SS5_PROX:INTRON	VDAC2	ENSG00000165637.14	ENST00000543351.5:ENST00000298468.9:ENST00000344036.8:ENST00000472137.5:ENST00000332211.11:ENST00000470745.5:ENST00000475142.5:ENST00000481876.5:ENST00000313132.8:ENST00000498394.5:ENST00000468285.1:ENST00000447677.5:ENST00000413289.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	64	2	2.51464	4.074635	5.63463	0.00684341	3.59226e-4	0.0748032	0.0175484
chr6	109369517	109369615	3185781	0	-	0.27551	[0,0.28]	chr6	296659	1	INTRON	INTRON	CD164	ENSG00000135535.17	ENST00000310786.10:ENST00000413644.6:ENST00000504373.2:ENST00000415861.2:ENST00000324953.9:ENST00000275080.11:ENST00000499860.6:ENST00000512821.5:ENST00000506649.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	78	2	2.5957	4.07463	5.55356	0.00656974	0.00278704	0.0736092	0.0469265
chrX	154688630	154688730	7914687	0	-	0.3	(0.28,0.32]	chrX	806068	80	INTRON	INTRON	GAB3	ENSG00000160219.12	ENST00000496390.5:ENST00000424127.3:ENST00000369575.7:ENST00000369568.8:ENST00000475685.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	54	2	2.80157	4.07461	5.34765	0.0147132	0.00287138	0.106558	0.0474836
chr1	162592531	162592631	238635	0	+	0.36	(0.35,0.378]	chr1	28741	4	SS3_PROX	SS3_PROX:INTRON	UAP1	ENSG00000117143.14	ENST00000367925.6:ENST00000367926.9	protein_coding	protein_coding	protein_coding	protein_coding	6	275	2	3.61811	4.07452	4.53093	1.33209e-6	3.32478e-7	6.78568e-4	3.12285e-4
chr1	118540	118639	352565	0	-	0.353535	(0.35,0.378]	chr1	40784	54	INTRON	INTRON	ENSG00000238009	ENSG00000238009.6	ENST00000466430.5:ENST00000477740.5:ENST00000471248.1	lncRNA	lncRNA	lncRNA	lncRNA	1	49	2	2.99173	4.07448	5.15723	0.00713365	0.00272706	0.0756118	0.0467523
chr1	43738422	43738522	86395	0	+	0.37	(0.35,0.378]	chr1	11651	21	EXON_MRNA	EXON_MRNA:INTRON	ST3GAL3	ENSG00000126091.21	ENST00000646096.1:ENST00000532911.6:ENST00000643597.1:ENST00000643886.1:ENST00000372372.7:ENST00000545417.5:ENST00000330208.6:ENST00000335430.10:ENST00000361400.9:ENST00000347631.8:ENST00000642331.1:ENST00000647237.1:ENST00000643252.1:ENST00000372374.7:ENST00000361392.9:ENST00000646109.1:ENST00000533997.6:ENST00000353126.8:ENST00000645640.1:ENST00000642934.1:ENST00000643283.1:ENST00000351035.8:ENST00000642949.1:ENST00000489897.6:ENST00000646971.1:ENST00000645142.1:ENST00000645705.1:ENST00000530154.5:ENST00000646027.1:ENST00000646069.1:ENST00000642504.1:ENST00000647148.1:ENST00000262915.8:ENST00000479383.6:ENST00000647482.1:ENST00000646776.1:ENST00000645394.1:ENST00000647128.1:ENST00000484868.2:ENST00000461066.6:ENST00000361746.9:ENST00000645034.1:ENST00000645165.1:ENST00000647134.1:ENST00000644195.1:ENST00000642194.1:ENST00000372368.7:ENST00000646686.1:ENST00000372366.6:ENST00000361812.9:ENST00000469715.6:ENST00000372369.5:ENST00000372367.5:ENST00000372365.5:ENST00000528371.5:ENST00000533212.5:ENST00000530581.5:ENST00000531816.1:ENST00000531993.6:ENST00000490541.6:ENST00000372362.6:ENST00000531451.5:ENST00000646416.1:ENST00000645117.1:ENST00000533933.6:ENST00000332628.11:ENST00000643813.1:ENST00000644922.1:ENST00000644287.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	49	2	2.99173	4.07448	5.15723	0.00713365	0.00272706	0.0756118	0.0467523
chr1	54719504	54719600	108229	0	+	0.375	(0.35,0.378]	chr1	14114	15	INTRON	INTRON	TTC4	ENSG00000243725.7	ENST00000371281.4:ENST00000371284.9	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	49	2	2.99173	4.07448	5.15723	0.00713365	0.00272706	0.0756118	0.0467523
chr15	63211943	63212043	6040976	0	+	0.47	(0.44,0.476]	chr15	575230	218	INTRON	INTRON	RAB8B	ENSG00000166128.13	ENST00000558990.5:ENST00000558119.5:ENST00000559927.1:ENST00000321437.9:ENST00000559006.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	67	2	2.51554	4.07446	5.63338	0.00777207	7.86121e-5	0.0757731	0.00738014
chr8	90387660	90387754	3793972	0	+	0.457447	(0.44,0.476]	chr8	351795	2	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	LINC00534	ENSG00000253394.7	ENST00000662145.1:ENST00000655523.1:ENST00000517400.6:ENST00000658299.1:ENST00000663329.1:ENST00000658342.1:ENST00000523283.6:ENST00000655219.1:ENST00000662692.1:ENST00000667296.1:ENST00000667565.1:ENST00000523406.2:ENST00000659030.1:ENST00000653734.1:ENST00000654785.1:ENST00000524361.5:ENST00000668745.1:ENST00000661519.1:ENST00000671657.1:ENST00000655123.1:ENST00000663098.1:ENST00000670903.1:ENST00000654946.1	lncRNA	lncRNA	lncRNA	lncRNA	4	165	2	3.24166	4.074425	4.90719	8.05642e-5	2.33359e-7	0.00804467	2.3186e-4
chr9	120405911	120406011	4332100	0	-	0.2	[0,0.28]	chr9	397951	19	EXON_MRNA	EXON_MRNA:INTRON	CDK5RAP2	ENSG00000136861.19	ENST00000349780.9:ENST00000360190.8:ENST00000687279.1:ENST00000687633.1:ENST00000684780.1:ENST00000687311.1:ENST00000479584.2:ENST00000690814.1:ENST00000686842.1:ENST00000691551.1:ENST00000693714.1:ENST00000693386.1:ENST00000688512.1:ENST00000692746.1:ENST00000686376.1:ENST00000692155.1:ENST00000690646.1:ENST00000693433.1:ENST00000688923.1:ENST00000689012.1:ENST00000473282.6:ENST00000480112.5:ENST00000685866.1:ENST00000689688.1:ENST00000416449.6:ENST00000691504.1:ENST00000425647.1:ENST00000360822.8:ENST00000693728.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	59	2	3.2621000000000002	4.074175	4.88625	0.0173315	0.00367113	0.104099	0.056059199999999997
chr11	62712032	62712131	4960833	0	-	0.545455	(0.515,0.57]	chr11	466761	23	INTRON	INTRON	HNRNPUL2-BSCL2	ENSG00000234857.2	ENST00000403734.2	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	3	72	2	2.28534	4.07415	5.86296	0.0061678	1.02967e-5	0.067653	0.00235018
chr2	27595673	27595772	718060	0	+	0.292929	(0.28,0.32]	chr2	83352	116	INTRON	INTRON	ZNF512	ENSG00000243943.10	ENST00000413371.6:ENST00000416005.6:ENST00000556601.5:ENST00000379717.5:ENST00000355467.6:ENST00000494548.1:ENST00000461705.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	73	2	2.84671	4.07412	5.30153	0.00332518	0.00216662	0.0512081	0.0434015
chr19	62406	62504	7108442	0	-	0.530612	(0.515,0.57]	chr19	713618	4	EXON_MRNA	EXON_MRNA:INTRON	WASH5P	ENSG00000282458.1	ENST00000632506.1:ENST00000633719.1	transcribed_processed_pseudogene	retained_intron	transcribed_processed_pseudogene	retained_intron:processed_transcript	2	89	2	3.91343	4.073840000000001	4.23425	1.28574e-4	1.40595e-5	0.0103138	0.00279379
chr9	136417848	136417916	4221363	0	+	0.588235	(0.57,1]	chr9	387539	3	SS3_PROX	SS3_PROX:INTRON	PMPCA	ENSG00000165688.12	ENST00000371717.8:ENST00000399219.7:ENST00000462616.1:ENST00000444897.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	41	2	3.01672	4.073465	5.13021	5.94133e-4	1.21664e-4	0.0221865	0.00992813
chr1	36298438	36298535	73684	0	+	0.371134	(0.35,0.378]	chr1	9424	13	INTRON	INTRON	THRAP3	ENSG00000054118.15	ENST00000469141.6:ENST00000648638.1:ENST00000354618.10	protein_coding	protein_coding	protein_coding	protein_coding	3	148	2	3.84639	4.073295	4.3002	3.60664e-5	8.90957e-6	0.00508987	0.00214966
chrX	44923484	44923584	7649105	0	+	0.3	(0.28,0.32]	chrX	782726	491	INTRON	INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000675440.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000621147.5:ENST00000475233.1:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	110	2	1.78733	4.072905	6.35848	0.0276087	7.51258e-6	0.123904	0.00195296
chr2	201405919	201406017	1313118	0	-	0.44898	(0.44,0.476]	chr2	137541	45	INTRON	INTRON	TRAK2	ENSG00000115993.13	ENST00000332624.8:ENST00000430254.1	protein_coding	protein_coding	protein_coding	protein_coding	1	48	2	3.45957	4.072605	4.68564	0.00816201	0.00106385	0.0766625	0.0300133
chr10	31898787	31898887	4590020	0	-	0.36	(0.35,0.378]	chr10	423163	368	INTRON	INTRON	ARHGAP12	ENSG00000165322.18	ENST00000344936.7:ENST00000375245.8:ENST00000396144.8:ENST00000375250.9:ENST00000311380.8	protein_coding	protein_coding	protein_coding	protein_coding	3	88	2	3.09988	4.0725	5.04512	0.00393262	1.27379e-4	0.0548259	0.00968882
chr12	91467934	91468034	5383895	0	-	0.26	[0,0.28]	chr12	513479	682	INTRON	INTRON	ENSG00000289605	ENSG00000289605.1	ENST00000685093.1	lncRNA	lncRNA	lncRNA	lncRNA	2	78	2	2.41169	4.0722249999999995	5.73276	0.0122872	0.00156565	0.0970106	0.0360583
chr6	57175092	57175191	2878913	0	+	0.40404	(0.378,0.408]	chr6	273335	19	INTRON	INTRON	BAG2	ENSG00000112208.11	ENST00000370693.5	protein_coding	protein_coding	protein_coding	protein_coding	1	50	2	2.63247	4.072105	5.51174	0.0215745	5.93655e-4	0.123836	0.0225024
chr7	74879675	74879775	3556647	0	-	0.48	(0.476,0.515]	chr7	331156	109	INTRON	INTRON	STAG3L2	ENSG00000277072.5	ENST00000651031.1:ENST00000650988.1:ENST00000652688.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	3	80	2	2.17347	4.07203	5.97059	0.010447	1.37724e-5	0.0855102	0.00276767
chr2	108541677	108541776	845918	0	+	0.454545	(0.44,0.476]	chr2	94661	67	INTRON	INTRON	LIMS1	ENSG00000169756.17	ENST00000695516.1:ENST00000544547.6:ENST00000695517.1	protein_coding	protein_coding	protein_coding	protein_coding	1	48	2	2.74372	4.07186	5.4	0.0153007	7.02611e-4	0.108569	0.024224
chr1	26234810	26234908	49490	0	+	0.561224	(0.515,0.57]	chr1	6192	1	INTRON	INTRON	CEP85	ENSG00000130695.16	ENST00000451429.8:ENST00000640292.2:ENST00000252992.8	protein_coding	protein_coding	protein_coding	protein_coding	1	45	2	3.1473	4.071825	4.99635	0.00397184	8.06602e-4	0.0549214	0.0258804
chr2	232741359	232741458	1037689	0	+	0.343434	(0.32,0.35]	chr2	110656	28	INTRON	INTRON	GIGYF2	ENSG00000204120.16	ENST00000629305.2:ENST00000428883.5:ENST00000409480.5:ENST00000456491.5:ENST00000373563.9:ENST00000409547.5:ENST00000430720.5:ENST00000425040.5:ENST00000421433.5:ENST00000423659.5:ENST00000409196.7:ENST00000409451.7:ENST00000463554.5:ENST00000440945.5:ENST00000429187.5:ENST00000424038.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	51	2	3.18392	4.071815	4.95971	0.00663522	0.00379806	0.0703181	0.0562562
chr15	60376175	60376275	6195109	0	-	0.46	(0.44,0.476]	chr15	590323	11	INTRON	INTRON	ANXA2	ENSG00000182718.18	ENST00000396024.7:ENST00000559818.6:ENST00000679109.1:ENST00000676687.1:ENST00000558169.6:ENST00000557906.6:ENST00000558558.6:ENST00000559113.6:ENST00000559780.6:ENST00000559956.6:ENST00000560468.6:ENST00000678870.1:ENST00000678061.1:ENST00000678450.1:ENST00000677968.1:ENST00000451270.7:ENST00000558985.6:ENST00000678796.1:ENST00000559647.2:ENST00000332680.8:ENST00000560014.5:ENST00000504475.6:ENST00000421017.6:ENST00000560466.5:ENST00000558132.5:ENST00000561022.5:ENST00000560367.6:ENST00000558503.6:ENST00000558998.5:ENST00000559559.5:ENST00000560165.5:ENST00000560389.5:ENST00000559725.5:ENST00000559350.5:ENST00000558986.5:ENST00000677258.1:ENST00000559467.5:ENST00000561445.5:ENST00000557937.5:ENST00000557904.5:ENST00000559370.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	47	2	3.3111	4.07156	4.83202	0.00525002	0.0020006	0.0633615	0.0412555
chr7	40059479	40059579	3311725	0	+	0.47	(0.44,0.476]	chr7	307521	2	SS5_PROX	SS5_PROX:INTRON	CDK13	ENSG00000065883.17	ENST00000340829.10:ENST00000181839.10:ENST00000613626.4:ENST00000646039.1:ENST00000643859.1:ENST00000484589.2:ENST00000643915.1:ENST00000645470.1:ENST00000642592.1:ENST00000478563.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	47	2	3.3111	4.07156	4.83202	0.00525002	0.0020006	0.0633615	0.0412555
chr6	4025962	4026062	2789744	0	+	0.34	(0.32,0.35]	chr6	263481	41	INTRON	INTRON	PRPF4B	ENSG00000112739.17	ENST00000480058.5:ENST00000337659.11	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	76	2	1.95271	4.071495	6.19028	0.0431213	6.56527e-5	0.162255	0.00715734
chr7	75481719	75481818	3558887	0	-	0.555556	(0.515,0.57]	chr7	331555	62	INTRON	INTRON	POM121C:ENSG00000242073	ENSG00000272391.6:ENSG00000242073.2	ENST00000615331.5:ENST00000398379.2:ENST00000415277.2	protein_coding	protein_coding	protein_coding:transcribed_unprocessed_pseudogene	protein_coding:transcribed_unprocessed_pseudogene	2	57	2	2.92115	4.07128	5.22141	0.00110258	6.44141e-4	0.03038	0.0231685
chr8	29055628	29055727	3726529	0	+	0.313131	(0.28,0.32]	chr8	346337	20	INTRON	INTRON	HMBOX1	ENSG00000147421.18	ENST00000522468.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	1	60	2	3.71616	4.07123	4.4263	0.0330296	4.76221e-4	0.133816	0.0197443
chr2	174162792	174162892	1269995	0	-	0.56	(0.515,0.57]	chr2	134282	204	INTRON	INTRON	OLA1	ENSG00000138430.16	ENST00000284719.8:ENST00000344357.9:ENST00000428402.6:ENST00000409546.5:ENST00000429575.1	protein_coding	protein_coding	protein_coding	protein_coding	2	57	2	2.57298	4.071025	5.56907	0.00506495	1.36543e-4	0.0646039	0.0106702
chr7	44015083	44015183	3527003	0	-	0.58	(0.57,1]	chr7	328872	3	SS3_PROX	SS3_PROX:INTRON	ENSG00000272655	ENSG00000272655.2	ENST00000326391.6:ENST00000418424.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	2	42	2	2.56996	4.070774999999999	5.57159	0.00499145	9.47307e-6	0.0646039	0.00236268
chr5	31496370	31496470	2596645	0	-	0.46	(0.44,0.476]	chr5	246662	6	INTRON	INTRON	DROSHA	ENSG00000113360.17	ENST00000344624.8:ENST00000511367.6:ENST00000513349.5:ENST00000512076.1	protein_coding	protein_coding	protein_coding	protein_coding	2	67	2	2.59632	4.07069	5.54506	0.00579248	1.21665e-4	0.0662959	0.00942499
chr15	27161476	27161576	5984058	0	+	0.28	[0,0.28]	chr15	569164	1343	INTRON	INTRON	GABRG3	ENSG00000182256.13	ENST00000615808.5:ENST00000555083.5	protein_coding	protein_coding	protein_coding	protein_coding	1	58	2	2.74901	4.070615	5.39222	0.0188843	0.00453865	0.118148	0.0595107
chr10	63378224	63378324	4634513	0	-	0.33	(0.32,0.35]	chr10	426230	48	INTRON	INTRON	JMJD1C	ENSG00000171988.20	ENST00000399262.7:ENST00000633035.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	24	2	3.77344	4.070494999999999	4.36755	0.0596635	0.0300552	0.189982	0.129138
chr12	71883145	71883242	5169635	0	+	0.329897	(0.32,0.35]	chr12	489732	22	INTRON	INTRON	TBC1D15	ENSG00000121749.16	ENST00000482439.6:ENST00000550746.5:ENST00000485960.7:ENST00000462788.6:ENST00000319106.12:ENST00000491063.5:ENST00000472611.6:ENST00000549402.5:ENST00000474468.5:ENST00000498482.5:ENST00000468049.2:ENST00000546932.5:ENST00000460818.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	24	2	3.77344	4.070494999999999	4.36755	0.0596635	0.0300552	0.189982	0.129138
chr12	110723095	110723195	5411330	0	-	0.35	(0.32,0.35]	chr12	516720	4	SS3_PROX	SS3_PROX:INTRON	PPP1CC	ENSG00000186298.12	ENST00000335007.10:ENST00000340766.9:ENST00000550261.5:ENST00000551582.1:ENST00000553024.1:ENST00000546933.5:ENST00000550991.5:ENST00000551676.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	24	2	3.77344	4.070494999999999	4.36755	0.0596635	0.0300552	0.189982	0.129138
chr14	69675905	69676005	5776355	0	+	0.35	(0.32,0.35]	chr14	547310	168	INTRON	INTRON	SUSD6	ENSG00000100647.8	ENST00000342745.5:ENST00000556993.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	24	2	3.77344	4.070494999999999	4.36755	0.0596635	0.0300552	0.189982	0.129138
chr18	26082728	26082828	6959660	0	-	0.33	(0.32,0.35]	chr18	688496	2	SS3_PROX	SS3_PROX:INTRON	SS18	ENSG00000141380.14	ENST00000415083.7:ENST00000542420.6:ENST00000579640.5:ENST00000269138.9:ENST00000269137.11:ENST00000585121.5:ENST00000539244.6:ENST00000585241.5:ENST00000578954.5:ENST00000579061.5:ENST00000577636.5:ENST00000584083.5:ENST00000578700.5:ENST00000582792.5:ENST00000581021.5:ENST00000577572.5:ENST00000582448.5:ENST00000581570.5:ENST00000577751.5:ENST00000580751.5:ENST00000580642.2:ENST00000578595.1:ENST00000583595.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	24	2	3.77344	4.070494999999999	4.36755	0.0596635	0.0300552	0.189982	0.129138
chr19	47092178	47092277	7195894	0	-	0.333333	(0.32,0.35]	chr19	729120	16	INTRON	INTRON	ZC3H4	ENSG00000130749.10	ENST00000253048.10:ENST00000594019.5:ENST00000597069.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	24	2	3.77344	4.070494999999999	4.36755	0.0596635	0.0300552	0.189982	0.129138
chr2	10150430	10150530	691007	0	+	0.34	(0.32,0.35]	chr2	81105	44	INTRON	INTRON	RRM2	ENSG00000171848.16	ENST00000641498.1:ENST00000646978.1:ENST00000381786.7	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	0	24	2	3.77344	4.070494999999999	4.36755	0.0596635	0.0300552	0.189982	0.129138
chr22	42208151	42208251	7592940	0	-	0.33	(0.32,0.35]	chr22	777708	281	INTRON	INTRON	TCF20	ENSG00000100207.21	ENST00000359486.8:ENST00000677622.1:ENST00000683686.1:ENST00000335626.8:ENST00000404876.1	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	3.77344	4.070494999999999	4.36755	0.0596635	0.0300552	0.189982	0.129138
chr7	56080170	56080270	3319353	0	+	0.35	(0.32,0.35]	chr7	308593	4	UTR3	UTR3:EXON_MRNA	SUMF2	ENSG00000129103.19	ENST00000651354.1:ENST00000651586.1:ENST00000652303.1:ENST00000275607.13:ENST00000650735.1:ENST00000395435.7:ENST00000342190.11:ENST00000436782.5:ENST00000434526.8:ENST00000423763.5:ENST00000438133.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	24	2	3.77344	4.070494999999999	4.36755	0.0596635	0.0300552	0.189982	0.129138
chr7	140053167	140053267	3659155	0	-	0.33	(0.32,0.35]	chr7	339609	58	INTRON	INTRON	PARP12	ENSG00000059378.13	ENST00000263549.8:ENST00000473341.5:ENST00000488726.5:ENST00000489809.5:ENST00000491598.5:ENST00000493262.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	24	2	3.77344	4.070494999999999	4.36755	0.0596635	0.0300552	0.189982	0.129138
chr9	96959895	96959994	4298451	0	-	0.343434	(0.32,0.35]	chr9	395256	6	INTRON	INTRON	MFSD14C	ENSG00000196312.15	ENST00000647176.1:ENST00000645073.1:ENST00000637076.1:ENST00000637099.1:ENST00000637864.1:ENST00000652726.1:ENST00000637811.1:ENST00000650909.1	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript:transcribed_unprocessed_pseudogene	0	24	2	3.77344	4.070494999999999	4.36755	0.0596635	0.0300552	0.189982	0.129138
chr4	98912248	98912348	2208353	0	-	0.42	(0.408,0.44]	chr4	216184	19	INTRON	INTRON	EIF4E	ENSG00000151247.13	ENST00000450253.7:ENST00000280892.10:ENST00000515638.5:ENST00000504432.5:ENST00000511644.5:ENST00000505992.1:ENST00000507665.5:ENST00000504472.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	50	2	2.89795	4.07031	5.24267	0.0110735	4.83767e-4	0.0873897	0.0199261
chr2	131092215	131092314	1229081	0	-	0.353535	(0.35,0.378]	chr2	130994	92	INTRON	INTRON	FAM168B	ENSG00000152102.18	ENST00000389915.4:ENST00000409185.5	protein_coding	protein_coding	protein_coding	protein_coding	1	49	2	3.21677	4.0701599999999996	4.92355	0.00573514	0.00313804	0.0657377	0.0514466
chrX	18297811	18297910	7770482	0	-	0.353535	(0.35,0.378]	chrX	794176	91	INTRON	INTRON	SCML2	ENSG00000102098.19	ENST00000251900.9	protein_coding	protein_coding	protein_coding	protein_coding	1	49	2	3.21677	4.0701599999999996	4.92355	0.00573514	0.00313804	0.0657377	0.0514466
chr19	20645295	20645395	7157980	0	-	0.39	(0.378,0.408]	chr19	723626	7	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	ZNF626	ENSG00000188171.17	ENST00000601440.6:ENST00000595405.1:ENST00000291750.6	protein_coding	protein_coding	protein_coding	protein_coding	2	65	2	3.01886	4.070069999999999	5.12128	0.00251746	7.99379e-4	0.0446195	0.0258804
chr1	8419927	8420027	369780	0	-	0.37	(0.35,0.378]	chr1	43438	536	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000377464.5:ENST00000400907.6:ENST00000476556.5:ENST00000656437.1:ENST00000488215.5:ENST00000460659.5:ENST00000492766.5:ENST00000465125.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	23	2	3.94291	4.070005	4.1971	0.0374229	0.0367539	0.155878	0.138959
chr1	21722164	21722264	396238	0	-	0.36	(0.35,0.378]	chr1	47268	4	SS3_PROX	SS3_PROX:INTRON	USP48	ENSG00000090686.16	ENST00000400301.5:ENST00000308271.14:ENST00000374732.7:ENST00000529637.5:ENST00000487880.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	23	2	3.94291	4.070005	4.1971	0.0374229	0.0367539	0.155878	0.138959
chr1	156219276	156219376	230957	0	+	0.36	(0.35,0.378]	chr1	27257	57	INTRON	INTRON	PMF1	ENSG00000160783.19	ENST00000368279.7:ENST00000466489.1:ENST00000368273.8:ENST00000368277.3:ENST00000606952.5:ENST00000497069.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	23	2	3.94291	4.070005	4.1971	0.0374229	0.0367539	0.155878	0.138959
chr10	121871437	121871537	4709259	0	-	0.37	(0.35,0.378]	chr10	434477	10	INTRON	INTRON	ATE1	ENSG00000107669.19	ENST00000369043.8:ENST00000224652.12:ENST00000693411.1:ENST00000540606.7:ENST00000690773.1:ENST00000686894.1:ENST00000685890.1:ENST00000687583.1:ENST00000693276.1:ENST00000686451.1:ENST00000687319.1:ENST00000686786.1:ENST00000684967.1:ENST00000689057.1:ENST00000692329.1:ENST00000689393.1:ENST00000689571.1:ENST00000692718.1:ENST00000688526.1:ENST00000692034.1:ENST00000690128.1:ENST00000690748.1:ENST00000692491.1:ENST00000369040.9:ENST00000691087.1:ENST00000691830.1:ENST00000687089.1:ENST00000693486.1:ENST00000690355.1:ENST00000691765.1:ENST00000691226.1:ENST00000692743.1:ENST00000691108.1:ENST00000689297.1:ENST00000685427.1:ENST00000692513.1:ENST00000688057.1:ENST00000684876.1:ENST00000687607.1:ENST00000688424.1:ENST00000692255.1:ENST00000690706.1:ENST00000693395.1:ENST00000690324.1:ENST00000692278.1:ENST00000687144.1:ENST00000691573.1:ENST00000685289.1:ENST00000686907.1:ENST00000687206.1:ENST00000685007.1:ENST00000686811.1:ENST00000691041.1:ENST00000423243.7:ENST00000689834.1:ENST00000689455.1:ENST00000693655.1:ENST00000690488.1:ENST00000687458.1:ENST00000685072.1:ENST00000692087.1:ENST00000690415.1:ENST00000687935.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	23	2	3.94291	4.070005	4.1971	0.0374229	0.0367539	0.155878	0.138959
chr11	96179604	96179704	5022732	0	-	0.36	(0.35,0.378]	chr11	473809	857	INTRON	INTRON	MAML2	ENSG00000184384.14	ENST00000524717.6	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	3.94291	4.070005	4.1971	0.0374229	0.0367539	0.155878	0.138959
chr13	111276813	111276904	5545948	0	+	0.351648	(0.35,0.378]	chr13	529850	8	INTRON	INTRON	ARHGEF7	ENSG00000102606.19	ENST00000317133.9:ENST00000375739.6:ENST00000375741.6:ENST00000646102.2:ENST00000469877.5:ENST00000466143.5:ENST00000218789.9:ENST00000375736.8:ENST00000426073.6:ENST00000375723.5:ENST00000478679.5:ENST00000544132.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	23	2	3.94291	4.070005	4.1971	0.0374229	0.0367539	0.155878	0.138959
chr16	84997001	84997100	6534026	0	-	0.363636	(0.35,0.378]	chr16	633151	6	INTRON	INTRON	ZDHHC7	ENSG00000153786.13	ENST00000313732.9:ENST00000344861.9:ENST00000564466.5:ENST00000569017.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	23	2	3.94291	4.070005	4.1971	0.0374229	0.0367539	0.155878	0.138959
chr18	62116112	62116209	6983422	0	-	0.350515	(0.35,0.378]	chr18	690969	11	INTRON	INTRON	PIGN	ENSG00000197563.11	ENST00000639600.1:ENST00000640252.2:ENST00000639912.1:ENST00000640876.1:ENST00000357637.10:ENST00000640145.1:ENST00000638977.1:ENST00000640170.1:ENST00000638167.1:ENST00000640540.1:ENST00000639342.1:ENST00000638435.1:ENST00000639681.1:ENST00000400334.7:ENST00000638936.1:ENST00000639758.1:ENST00000639902.1:ENST00000638858.1:ENST00000638369.1:ENST00000640593.1:ENST00000640268.1:ENST00000638904.1:ENST00000638424.1:ENST00000640050.1:ENST00000638183.1:ENST00000639174.1:ENST00000639214.1:ENST00000638329.1:ENST00000589339.6:ENST00000588571.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	23	2	3.94291	4.070005	4.1971	0.0374229	0.0367539	0.155878	0.138959
chr2	112557995	112558081	851769	0	+	0.360465	(0.35,0.378]	chr2	95489	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	POLR1B	ENSG00000125630.16	ENST00000537335.5:ENST00000541869.5:ENST00000333990.10:ENST00000409894.7:ENST00000448770.5:ENST00000263331.10:ENST00000417433.6:ENST00000498054.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	23	2	3.94291	4.070005	4.1971	0.0374229	0.0367539	0.155878	0.138959
chr2	135504389	135504489	1233233	0	-	0.36	(0.35,0.378]	chr2	131241	1	CDS_START	CDS_START:CDS:UTR5:EXON_MRNA:INTRON	ZRANB3	ENSG00000121988.18	ENST00000264159.11:ENST00000401392.5:ENST00000536680.5:ENST00000403017.2:ENST00000452187.6:ENST00000492193.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	23	2	3.94291	4.070005	4.1971	0.0374229	0.0367539	0.155878	0.138959
chr3	44983873	44983972	1413477	0	+	0.363636	(0.35,0.378]	chr3	148370	61	INTRON	INTRON	EXOSC7	ENSG00000075914.13	ENST00000461361.5:ENST00000477865.1:ENST00000482004.5:ENST00000265564.8:ENST00000468667.5:ENST00000467846.5:ENST00000491476.5:ENST00000481405.1:ENST00000498168.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	23	2	3.94291	4.070005	4.1971	0.0374229	0.0367539	0.155878	0.138959
chr5	177205976	177206075	2554426	0	+	0.353535	(0.35,0.378]	chr5	243952	13	INTRON	INTRON	NSD1	ENSG00000165671.22	ENST00000508896.6:ENST00000689549.1:ENST00000354179.9:ENST00000686993.1:ENST00000689326.1:ENST00000439151.7:ENST00000510954.6:ENST00000689345.1:ENST00000347982.9:ENST00000687453.1:ENST00000685206.1:ENST00000638627.3:ENST00000644863.2:ENST00000688613.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	23	2	3.94291	4.070005	4.1971	0.0374229	0.0367539	0.155878	0.138959
chr7	102070917	102071016	3368904	0	+	0.363636	(0.35,0.378]	chr7	315245	1	INTRON	INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000497815.5:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000558469.5:ENST00000560541.5:ENST00000558836.5:ENST00000606749.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	23	2	3.94291	4.070005	4.1971	0.0374229	0.0367539	0.155878	0.138959
chr1	52304524	52304624	103248	0	+	0.39	(0.378,0.408]	chr1	13540	2	INTRON	INTRON	ZFYVE9	ENSG00000157077.16	ENST00000287727.8:ENST00000371591.2:ENST00000357206.6:ENST00000469134.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	23	2	3.82294	4.069965	4.31699	0.044228	0.0250408	0.162255	0.12011
chr1	61128005	61128105	127850	0	+	0.38	(0.378,0.408]	chr1	14775	158	EXON_MRNA	EXON_MRNA:INTRON	NFIA	ENSG00000162599.17	ENST00000371191.5:ENST00000664495.1:ENST00000476646.5:ENST00000407417.7:ENST00000479364.1:ENST00000371189.8:ENST00000670151.1:ENST00000664149.1:ENST00000662015.1:ENST00000403491.8:ENST00000371187.7:ENST00000485903.6:ENST00000371185.6:ENST00000371184.6:ENST00000603233.2:ENST00000496712.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	23	2	3.82294	4.069965	4.31699	0.044228	0.0250408	0.162255	0.12011
chr1	113441044	113441144	189219	0	+	0.39	(0.378,0.408]	chr1	20964	367	INTRON	INTRON	MAGI3	ENSG00000081026.19	ENST00000307546.14:ENST00000369617.8:ENST00000369615.5:ENST00000369611.4:ENST00000486456.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	23	2	3.82294	4.069965	4.31699	0.044228	0.0250408	0.162255	0.12011
chr10	84465309	84465408	4478857	0	+	0.40404	(0.378,0.408]	chr10	412251	9	INTRON	INTRON	CCSER2	ENSG00000107771.17	ENST00000372088.8:ENST00000224756.12:ENST00000494144.5:ENST00000543283.2:ENST00000493409.5:ENST00000498300.5:ENST00000480006.1:ENST00000466105.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	23	2	3.82294	4.069965	4.31699	0.044228	0.0250408	0.162255	0.12011
chr11	3026475	3026575	4892276	0	-	0.39	(0.378,0.408]	chr11	458449	4	SS5_PROX	SS5_PROX:INTRON	CARS1	ENSG00000110619.18	ENST00000397111.9:ENST00000531387.5:ENST00000380525.9:ENST00000278224.13:ENST00000529772.5:ENST00000526890.5:ENST00000465240.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	23	2	3.82294	4.069965	4.31699	0.044228	0.0250408	0.162255	0.12011
chr12	120873211	120873311	5435596	0	-	0.38	(0.378,0.408]	chr12	519663	377	INTRON	INTRON	SPPL3	ENSG00000157837.16	ENST00000353487.7:ENST00000536996.5:ENST00000543608.5:ENST00000543854.5	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	3.82294	4.069965	4.31699	0.044228	0.0250408	0.162255	0.12011
chr14	76152833	76152917	5795974	0	+	0.380952	(0.378,0.408]	chr14	549130	4	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	GPATCH2L	ENSG00000089916.18	ENST00000554375.5:ENST00000556109.1:ENST00000557542.5:ENST00000261530.12:ENST00000557263.5:ENST00000557207.1:ENST00000554125.5:ENST00000312858.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	23	2	3.82294	4.069965	4.31699	0.044228	0.0250408	0.162255	0.12011
chr15	68065841	68065941	6056069	0	+	0.39	(0.378,0.408]	chr15	576554	40	INTRON	INTRON	PIAS1	ENSG00000033800.14	ENST00000564915.5:ENST00000249636.11:ENST00000562190.1:ENST00000545237.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	23	2	3.82294	4.069965	4.31699	0.044228	0.0250408	0.162255	0.12011
chr17	32185060	32185159	6597257	0	+	0.40404	(0.378,0.408]	chr17	641772	14	INTRON	INTRON	RHOT1	ENSG00000126858.19	ENST00000333942.10:ENST00000358365.7:ENST00000583994.5:ENST00000545287.7:ENST00000354266.7:ENST00000581031.5:ENST00000581094.5:ENST00000578205.5:ENST00000580976.1:ENST00000394692.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	23	2	3.82294	4.069965	4.31699	0.044228	0.0250408	0.162255	0.12011
chr17	76225168	76225268	6841544	0	-	0.38	(0.378,0.408]	chr17	676698	123	INTRON	INTRON	RNF157	ENSG00000141576.16	ENST00000647930.1:ENST00000269391.11:ENST00000319945.10:ENST00000592271.1	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	3.82294	4.069965	4.31699	0.044228	0.0250408	0.162255	0.12011
chr18	26273667	26273766	6884960	0	+	0.40404	(0.378,0.408]	chr18	682443	57	INTRON	INTRON	TAF4B	ENSG00000141384.13	ENST00000269142.10:ENST00000578121.5:ENST00000418698.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	23	2	3.82294	4.069965	4.31699	0.044228	0.0250408	0.162255	0.12011
chr2	70289472	70289572	1152569	0	-	0.4	(0.378,0.408]	chr2	123138	1	SS3_PROX	SS3_PROX:INTRON	SNRPG	ENSG00000143977.14	ENST00000272348.7:ENST00000429728.1:ENST00000482975.6:ENST00000438261.5:ENST00000454893.1:ENST00000413456.6:ENST00000449935.6:ENST00000480370.1:ENST00000488400.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	23	2	3.82294	4.069965	4.31699	0.044228	0.0250408	0.162255	0.12011
chr20	36248855	36248954	7265606	0	+	0.383838	(0.378,0.408]	chr20	738307	12	INTRON	INTRON	AAR2	ENSG00000131043.13	ENST00000680639.1:ENST00000397286.7:ENST00000679519.1:ENST00000680412.1:ENST00000679667.1:ENST00000680933.1:ENST00000320849.9:ENST00000680247.1:ENST00000680811.1:ENST00000373932.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	23	2	3.82294	4.069965	4.31699	0.044228	0.0250408	0.162255	0.12011
chr22	20630612	20630712	7557839	0	-	0.39	(0.378,0.408]	chr22	772926	24	INTRON	INTRON	SMPD4P1	ENSG00000223553.6	ENST00000443839.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	23	2	3.82294	4.069965	4.31699	0.044228	0.0250408	0.162255	0.12011
chr6	17760560	17760659	3066230	0	-	0.383838	(0.378,0.408]	chr6	284878	15	UTR3	UTR3:EXON_MRNA	KIF13A	ENSG00000137177.20	ENST00000378814.9:ENST00000502297.5	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	3.82294	4.069965	4.31699	0.044228	0.0250408	0.162255	0.12011
chr7	105111488	105111588	3601102	0	-	0.38	(0.378,0.408]	chr7	336042	3	SS3_PROX	SS3_PROX:INTRON	SRPK2	ENSG00000135250.17	ENST00000493638.1	protein_coding	processed_transcript	protein_coding	processed_transcript	0	23	2	3.82294	4.069965	4.31699	0.044228	0.0250408	0.162255	0.12011
chr7	129764403	129764502	3636671	0	-	0.40404	(0.378,0.408]	chr7	338158	6	INTRON	INTRON	ENSG00000286380	ENSG00000286380.1	ENST00000660838.1	lncRNA	lncRNA	lncRNA	lncRNA	0	23	2	3.82294	4.069965	4.31699	0.044228	0.0250408	0.162255	0.12011
chr9	37562740	37562840	4251554	0	-	0.38	(0.378,0.408]	chr9	391555	206	INTRON	INTRON	FBXO10	ENSG00000147912.13	ENST00000432825.7:ENST00000276960.7:ENST00000541607.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	23	2	3.82294	4.069965	4.31699	0.044228	0.0250408	0.162255	0.12011
chrX	53661308	53661408	7821655	0	-	0.38	(0.378,0.408]	chrX	798234	68	INTRON	INTRON	HUWE1	ENSG00000086758.16	ENST00000262854.11:ENST00000342160.7:ENST00000218328.12:ENST00000446750.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	23	2	3.82294	4.069965	4.31699	0.044228	0.0250408	0.162255	0.12011
chr22	26588156	26588256	7565049	0	-	0.34	(0.32,0.35]	chr22	774054	226	INTRON	INTRON	TPST2	ENSG00000128294.16	ENST00000338754.9:ENST00000403880.5:ENST00000442495.5:ENST00000440953.5:ENST00000450022.1	protein_coding	protein_coding	protein_coding	protein_coding	4	94	2	2.05666	4.069775	6.08289	0.00840213	1.06767e-4	0.0824581	0.00924854
chr2	42331475	42331572	760143	0	+	0.195876	[0,0.28]	chr2	86258	14	UTR3	UTR3:EXON_MRNA	EML4	ENSG00000143924.19	ENST00000318522.10:ENST00000406175.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	64	2	2.9385	4.069605	5.20071	0.0142776	0.00261806	0.0963703	0.0470772
chr12	108676577	108676677	5406223	0	-	0.51	(0.476,0.515]	chr12	516004	141	INTRON	INTRON	CORO1C	ENSG00000110880.11	ENST00000261401.8:ENST00000420959.6:ENST00000541050.5:ENST00000549384.5:ENST00000421578.6:ENST00000550542.5:ENST00000549772.5:ENST00000552871.5:ENST00000547294.5:ENST00000550032.5:ENST00000551550.5:ENST00000546571.5:ENST00000551044.1:ENST00000547170.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	47	2	3.29939	4.0695049999999995	4.83962	0.00480934	0.00211868	0.0602209	0.0425644
chr17	37298182	37298281	6761956	0	-	0.383838	(0.378,0.408]	chr17	664939	83	INTRON	INTRON	ACACA	ENSG00000278540.5	ENST00000616317.5:ENST00000614428.4:ENST00000612895.4:ENST00000617649.4:ENST00000613146.4:ENST00000615229.4:ENST00000621960.1:ENST00000617548.1:ENST00000616352.4:ENST00000614789.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	69	2	2.39444	4.0694099999999995	5.74438	0.0122858	5.15539e-5	0.091087	0.00585477
chr6	118964166	118964266	3202200	0	-	0.42	(0.408,0.44]	chr6	298150	1	SS5_PROX	SS5_PROX:INTRON	FAM184A	ENSG00000111879.20	ENST00000338891.12:ENST00000521043.5:ENST00000621231.4:ENST00000517987.5:ENST00000352896.9:ENST00000475529.7:ENST00000481884.6:ENST00000368475.8:ENST00000617072.4:ENST00000368472.6:ENST00000521531.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	48	2	2.74518	4.06919	5.3932	0.0152229	7.81492e-4	0.108535	0.0257168
chr8	9023739	9023838	3695773	0	+	0.232323	[0,0.28]	chr8	342937	29	INTRON	INTRON	ERI1	ENSG00000104626.15	ENST00000519292.5:ENST00000250263.8:ENST00000520332.5:ENST00000518663.1:ENST00000522612.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	78	2	2.6632	4.06917	5.47514	0.00515076	0.00354561	0.0650394	0.0529186
chr10	68025045	68025145	4637434	0	-	0.42	(0.408,0.44]	chr10	426399	1	SS5_PROX	SS5_PROX:INTRON	HERC4	ENSG00000148634.16	ENST00000277817.10:ENST00000373700.9:ENST00000412272.6:ENST00000395198.7:ENST00000473533.6:ENST00000427635.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	50	2	2.95296	4.06916	5.18536	0.00929354	6.17381e-4	0.0817766	0.0223951
chr17	82544165	82544265	6692849	0	+	0.43	(0.408,0.44]	chr17	654627	235	INTRON	INTRON	FOXK2	ENSG00000141568.21	ENST00000473637.6:ENST00000335255.10:ENST00000527313.6:ENST00000570585.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	50	2	2.95296	4.06916	5.18536	0.00929354	6.17381e-4	0.0817766	0.0223951
chr2	39263038	39263136	1102517	0	-	0.418367	(0.408,0.44]	chr2	118343	19	INTRON	INTRON	MAP4K3	ENSG00000011566.15	ENST00000263881.8:ENST00000437545.5:ENST00000341681.9:ENST00000475457.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	50	2	2.95296	4.06916	5.18536	0.00929354	6.17381e-4	0.0817766	0.0223951
chr15	59003401	59003501	6039039	0	+	0.51	(0.476,0.515]	chr15	574972	146	INTRON	INTRON	RNF111	ENSG00000157450.16	ENST00000559757.1:ENST00000348370.9:ENST00000559160.1:ENST00000559209.5:ENST00000557998.5	protein_coding	protein_coding	protein_coding	protein_coding	1	47	2	2.87879	4.06912	5.25945	0.00999149	0.00111445	0.0879541	0.0306328
chr15	59022025	59022125	6039227	0	+	0.51	(0.476,0.515]	chr15	574979	175	INTRON	INTRON	RNF111	ENSG00000157450.16	ENST00000559757.1:ENST00000348370.9:ENST00000559160.1:ENST00000559209.5:ENST00000557998.5	protein_coding	protein_coding	protein_coding	protein_coding	1	47	2	2.87879	4.06912	5.25945	0.00999149	0.00111445	0.0879541	0.0306328
chr1	23962768	23962867	45017	0	+	0.30303	(0.28,0.32]	chr1	5542	10	UTR3	UTR3:EXON_MRNA	PNRC2	ENSG00000189266.13	ENST00000647887.1:ENST00000334351.8	protein_coding	protein_coding	protein_coding	protein_coding	2	79	2	2.29708	4.069085	5.84109	0.0195087	1.04715e-4	0.109483	0.00863456
chr2	101846306	101846405	837557	0	+	0.424242	(0.408,0.44]	chr2	93964	16	INTRON	INTRON	MAP4K4	ENSG00000071054.17	ENST00000324219.9:ENST00000350878.9:ENST00000425019.6:ENST00000625522.3:ENST00000413150.6:ENST00000634702.1:ENST00000456652.5:ENST00000347699.8:ENST00000417294.5:ENST00000627726.3:ENST00000476609.1:ENST00000421882.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	47	2	3.31257	4.068935	4.8253	0.0056738	0.00198621	0.0653997	0.0411469
chr5	72132826	72132926	2385836	0	+	0.44	(0.408,0.44]	chr5	230228	160	INTRON	INTRON	MAP1B	ENSG00000131711.15	ENST00000512974.5:ENST00000296755.12:ENST00000513526.6:ENST00000511641.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	47	2	3.31257	4.068935	4.8253	0.0056738	0.00198621	0.0653997	0.0411469
chr17	1849634	1849733	6546178	0	+	0.383838	(0.378,0.408]	chr17	634943	46	INTRON	INTRON	RPA1	ENSG00000132383.12	ENST00000571058.5:ENST00000570451.5:ENST00000254719.10:ENST00000571725.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	64	2	2.90835	4.068795	5.22924	0.00172721	0.00133715	0.0374701	0.0335955
chr12	64406228	64406326	5152897	0	+	0.530612	(0.515,0.57]	chr12	487721	5	INTRON	INTRON	XPOT	ENSG00000184575.12	ENST00000332707.10:ENST00000540203.5	protein_coding	protein_coding	protein_coding	protein_coding	1	47	2	2.52504	4.068765	5.61249	0.029342	4.24748e-5	0.128055	0.00526976
chr13	79379506	79379606	5626142	0	-	0.34	(0.32,0.35]	chr13	536667	2	INTRON	INTRON	RBM26	ENSG00000139746.16	ENST00000438737.3:ENST00000438724.5:ENST00000622611.4:ENST00000267229.11:ENST00000472143.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	90	2	2.16099	4.06874	5.97649	0.0127227	3.1737e-5	0.0926667	0.00449886
chr18	73254198	73254297	6988517	0	-	0.333333	(0.32,0.35]	chr18	691712	12	INTRON	INTRON	LINC02864	ENSG00000263711.6	ENST00000584544.5:ENST00000581011.5:ENST00000581862.6:ENST00000669547.1:ENST00000661525.1:ENST00000583405.5:ENST00000582571.2:ENST00000667943.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	8	133	2	1.97305	4.0686100000000005	6.16417	0.00280388	7.39992e-5	0.0488779	0.00770735
chr1	51504704	51504804	454212	0	-	0.38	(0.378,0.408]	chr1	54447	230	INTRON	INTRON	EPS15	ENSG00000085832.17	ENST00000371733.8:ENST00000371730.6:ENST00000371727.5:ENST00000471391.1:ENST00000465467.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	49	2	3.47377	4.068575	4.66338	0.0103469	0.00103087	0.0850389	0.0294094
chr6	150206848	150206948	2997414	0	+	0.41	(0.408,0.44]	chr6	280443	630	INTRON	INTRON	PPP1R14C	ENSG00000198729.5	ENST00000361131.5	protein_coding	protein_coding	protein_coding	protein_coding	1	47	2	2.89193	4.06847	5.24501	0.00950364	0.00137378	0.0863579	0.0336718
chr2	151442191	151442291	893542	0	+	0.51	(0.476,0.515]	chr2	98953	2	SS5_PROX	SS5_PROX:INTRON	RIF1	ENSG00000080345.18	ENST00000453091.6:ENST00000428287.6:ENST00000444746.7:ENST00000243326.9:ENST00000414861.6:ENST00000430328.6	protein_coding	protein_coding	protein_coding	protein_coding	2	63	2	2.93046	4.068455	5.20645	0.00136049	0.00118985	0.0336321	0.031662
chr12	45219485	45219585	5120047	0	+	0.39	(0.378,0.408]	chr12	483120	27	INTRON	INTRON	ANO6	ENSG00000177119.17	ENST00000426898.2:ENST00000425752.6:ENST00000423947.7:ENST00000320560.13:ENST00000680498.1:ENST00000550630.5:ENST00000680201.1:ENST00000681156.1:ENST00000679761.1:ENST00000680371.1:ENST00000681817.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	64	2	2.46345	4.068415	5.67338	0.00827342	3.05145e-4	0.0813266	0.0161236
chr9	4798813	4798912	4094924	0	+	0.333333	(0.32,0.35]	chr9	373155	52	INTRON	INTRON	RCL1	ENSG00000120158.12	ENST00000381750.9:ENST00000381732.3:ENST00000442869.5:ENST00000473230.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	90	2	3.00559	4.06841	5.13123	0.00394704	2.41032e-4	0.0548259	0.0136674
chr7	119667764	119667864	3628014	0	-	0.29	(0.28,0.32]	chr7	337315	1673	INTRON	INTRON	LINC02476	ENSG00000225546.6	ENST00000660268.1	lncRNA	lncRNA	lncRNA	lncRNA	3	173	2	3.58634	4.068205	4.55007	1.33246e-4	6.15937e-6	0.0105174	0.00174279
chr16	22369275	22369374	6462710	0	-	0.383838	(0.378,0.408]	chr16	623630	39	INTRON	INTRON	CDR2	ENSG00000140743.8	ENST00000268383.7:ENST00000564542.5:ENST00000561630.1:ENST00000567406.5:ENST00000563573.5:ENST00000569045.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	52	2	2.60296	4.067975	5.53299	0.0267851	1.47095e-4	0.123349	0.0105341
chr12	123207860	123207960	5443805	0	-	0.23	[0,0.28]	chr12	520832	41	INTRON	INTRON	MPHOSPH9	ENSG00000051825.15	ENST00000606320.6:ENST00000541076.6:ENST00000545556.6:ENST00000302373.8:ENST00000539024.5:ENST00000539336.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	60	2	3.3753	4.06747	4.75964	0.0232081	0.00242466	0.118148	0.0454587
chr7	111237504	111237604	3620857	0	-	0.17	[0,0.28]	chr7	337093	2736	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	80	2	2.15457	4.06726	5.97995	0.0269306	6.65031e-4	0.135288	0.023496
chr22	42615393	42615478	7527053	0	+	0.411765	(0.408,0.44]	chr22	769577	1	EXON_LNCRNA	EXON_LNCRNA	ENSG00000270022	ENSG00000270022.3	ENST00000602478.1	lncRNA	lncRNA	lncRNA	lncRNA	5	251	2	3.20763	4.0670850000000005	4.92654	5.89253e-5	1.22187e-8	0.00630001	3.26717e-5
chr13	51963881	51963979	5596429	0	-	0.489796	(0.476,0.515]	chr13	534946	16	INTRON	INTRON	ATP7B	ENSG00000123191.16	ENST00000242839.10:ENST00000344297.9:ENST00000674147.1:ENST00000448424.7:ENST00000634620.1:ENST00000634296.1:ENST00000400370.8:ENST00000634844.1:ENST00000673772.1:ENST00000634308.1:ENST00000418097.7:ENST00000400366.6:ENST00000635406.1:ENST00000482841.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	62	2	2.68023	4.0670649999999995	5.4539	0.00353671	5.16081e-4	0.0546236	0.0208667
chr2	152696417	152696516	1246313	0	-	0.434343	(0.408,0.44]	chr2	132360	14	INTRON	INTRON	PRPF40A	ENSG00000196504.20	ENST00000410080.8:ENST00000545856.8:ENST00000696382.1:ENST00000696381.1:ENST00000354363.11:ENST00000493468.7:ENST00000448428.2:ENST00000489741.1:ENST00000450303.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	62	2	2.69457	4.066985	5.4394	0.00331036	6.50925e-4	0.0527031	0.0232863
chr20	47310704	47310803	7349050	0	-	0.515152	(0.476,0.515]	chr20	749342	1	INTRON	INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000468376.2:ENST00000435836.5:ENST00000446894.5:ENST00000441977.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	261	2	4.06548	4.066974999999999	4.06847	4.50353e-7	1.70623e-7	3.87386e-4	1.88633e-4
chr13	91351049	91351146	5516819	0	+	0.391753	(0.378,0.408]	chr13	527579	15	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:INTRON	MIR17HG	ENSG00000215417.13	ENST00000400282.6:ENST00000582141.5:ENST00000581816.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	2	69	2	2.55607	4.0669450000000005	5.57782	0.00704647	1.18586e-4	0.0718189	0.00930884
chr15	50637121	50637221	6172780	0	-	0.3	(0.28,0.32]	chr15	588361	3	SS5_PROX	SS5_PROX:INTRON	TRPM7	ENSG00000092439.16	ENST00000646667.1:ENST00000560955.5	protein_coding	protein_coding	protein_coding	protein_coding	1	57	2	3.54514	4.0669450000000005	4.58875	0.0230574	0.00100603	0.118056	0.0292285
chr1	16634526	16634626	383725	0	-	0.52	(0.515,0.57]	chr1	45221	1	SS5_PROX	SS5_PROX:INTRON	CROCCP2	ENSG00000215908.10	ENST00000639456.1:ENST00000412962.4:ENST00000635081.1:ENST00000362058.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	1	43	2	3.37125	4.066845	4.76244	0.00362147	0.00136343	0.0533855	0.0339121
chr3	37042929	37043027	1395661	0	+	0.336735	(0.32,0.35]	chr3	146271	2	INTRON	INTRON	MLH1	ENSG00000076242.16	ENST00000536378.5:ENST00000673899.1:ENST00000674111.1:ENST00000673972.1:ENST00000231790.8:ENST00000673715.1:ENST00000432299.6:ENST00000673897.1:ENST00000673947.1:ENST00000456676.6:ENST00000673673.1:ENST00000674019.1:ENST00000458205.6:ENST00000413212.2:ENST00000447829.6:ENST00000673990.1:ENST00000455445.6:ENST00000435176.5:ENST00000539477.6:ENST00000441265.6:ENST00000673889.1:ENST00000616768.5:ENST00000450420.5:ENST00000413740.1:ENST00000674125.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	68	2	2.71053	4.06679	5.42305	0.00346747	0.00149027	0.0539802	0.035
chr9	128268711	128268804	4358155	0	-	0.602151	(0.57,1]	chr9	400428	3	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	GOLGA2	ENSG00000167110.19	ENST00000421699.8:ENST00000611957.5:ENST00000693185.1:ENST00000686291.1:ENST00000685377.1:ENST00000687179.1:ENST00000458730.3:ENST00000693047.1:ENST00000686884.1:ENST00000693180.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	56	2	2.73461	4.066635	5.39866	2.02023e-4	2.7267e-5	0.0124395	0.00430583
chr17	46086731	46086831	6783800	0	-	0.46	(0.44,0.476]	chr17	669199	38	INTRON	INTRON	KANSL1	ENSG00000120071.15	ENST00000574590.6:ENST00000572904.6:ENST00000432791.7:ENST00000575318.6:ENST00000638275.1:ENST00000262419.10:ENST00000648792.1:ENST00000639531.1:ENST00000639150.1:ENST00000639853.1:ENST00000571698.2:ENST00000639375.1:ENST00000577114.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	78	2	1.98146	4.0664299999999995	6.1514	0.0186013	2.2546e-5	0.117264	0.00386909
chr2	175993878	175993955	1273123	0	-	0.311688	(0.28,0.32]	chr2	134585	3	SS5_PROX	SS5_PROX:INTRON	LNPK	ENSG00000144320.14	ENST00000272748.9:ENST00000544803.5:ENST00000409660.5:ENST00000392540.6:ENST00000483230.5:ENST00000445472.1:ENST00000466445.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	54	2	3.26551	4.066409999999999	4.86731	0.0116253	0.0030714	0.0889104	0.0509893
chr1	171506568	171506668	253425	0	+	0.32	(0.28,0.32]	chr1	30096	205	INTRON	INTRON	PRRC2C	ENSG00000117523.18	ENST00000647382.2:ENST00000367742.7:ENST00000476522.5:ENST00000338920.8:ENST00000467601.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	153	2	2.32287	4.0663350000000005	5.8098	5.67703e-4	5.51525e-4	0.0220072	0.0213489
chr8	25448510	25448607	3926248	0	-	0.319588	(0.28,0.32]	chr8	359451	19	INTRON	INTRON	KCTD9	ENSG00000104756.16	ENST00000221200.9:ENST00000519665.5:ENST00000523140.5:ENST00000522493.5:ENST00000518067.5:ENST00000518997.5:ENST00000523294.5:ENST00000521458.5:ENST00000524217.1:ENST00000520405.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	59	2	2.51488	4.0660050000000005	5.61713	0.0380957	2.86819e-4	0.141678	0.0150568
chr17	27137005	27137105	6580195	0	+	0.29	(0.28,0.32]	chr17	639586	402	INTRON	INTRON	ENSG00000285822	ENSG00000285822.1	ENST00000649401.1	lncRNA	lncRNA	lncRNA	lncRNA	1	58	2	2.78004	4.065965	5.35189	0.0193244	8.52844e-4	0.108861	0.0264928
chr11	63946329	63946428	4801695	0	+	0.535354	(0.515,0.57]	chr11	445150	5	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NAA40	ENSG00000110583.13	ENST00000338447.10:ENST00000536939.1:ENST00000534965.5:ENST00000377793.9:ENST00000544138.5:ENST00000539656.5:ENST00000542163.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	72	2	2.4745	4.0659399999999994	5.65738	0.00279583	3.32659e-5	0.0469265	0.00461719
chr1	32097952	32098051	63401	0	+	0.40404	(0.378,0.408]	chr1	8055	18	INTRON	INTRON	TMEM39B	ENSG00000121775.18	ENST00000487305.5:ENST00000336294.10:ENST00000441402.5:ENST00000468135.5:ENST00000476968.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	51	2	2.84663	4.06592	5.28521	0.0133954	4.52877e-4	0.0946278	0.0192381
chr3	49784969	49785069	1694868	0	-	0.39	(0.378,0.408]	chr3	173818	362	INTRON	INTRON	IP6K1	ENSG00000176095.12	ENST00000321599.9:ENST00000395238.5:ENST00000613416.4:ENST00000468463.5:ENST00000460540.1:ENST00000498149.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	51	2	2.84663	4.06592	5.28521	0.0133954	4.52877e-4	0.0946278	0.0192381
chr11	73083494	73083594	4982305	0	-	0.39	(0.378,0.408]	chr11	470750	4	SS5_PROX	SS5_PROX:INTRON	FCHSD2	ENSG00000137478.15	ENST00000409418.9:ENST00000311172.11:ENST00000409314.5:ENST00000458644.6:ENST00000409853.5:ENST00000422375.1	protein_coding	protein_coding	protein_coding	protein_coding	1	51	2	2.90162	4.065865	5.23011	0.0113157	5.72873e-4	0.0886121	0.0217398
chr1	16276333	16276433	381854	0	-	0.41	(0.408,0.44]	chr1	44869	192	INTRON	INTRON	FBXO42	ENSG00000037637.11	ENST00000375592.8	protein_coding	protein_coding	protein_coding	protein_coding	1	50	2	3.00595	4.065815	5.12568	0.00781452	7.90919e-4	0.0759016	0.0258324
chr7	45751228	45751328	3529255	0	-	0.42	(0.408,0.44]	chr7	329262	3	SS5_PROX	SS5_PROX:INTRON	SEPTIN7P2	ENSG00000214765.9	ENST00000338231.8:ENST00000688931.1:ENST00000429741.5:ENST00000689783.1:ENST00000693141.1:ENST00000684893.1:ENST00000690171.1:ENST00000428414.5:ENST00000686085.1:ENST00000686032.1:ENST00000691119.1:ENST00000688953.1:ENST00000690342.1:ENST00000690179.1:ENST00000413875.6:ENST00000689506.1:ENST00000691450.1:ENST00000687862.1:ENST00000686398.1:ENST00000398921.6	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript:transcribed_unprocessed_pseudogene	1	50	2	3.00595	4.065815	5.12568	0.00781452	7.90919e-4	0.0759016	0.0258324
chr19	57844057	57844156	7105971	0	+	0.333333	(0.32,0.35]	chr19	713218	16	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	ENSG00000268750:ZNF587B	ENSG00000268750.7:ENSG00000269343.9	ENST00000597134.5:ENST00000596498.2:ENST00000593873.6:ENST00000603271.1:ENST00000598031.1:ENST00000442832.8:ENST00000594901.2:ENST00000604231.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	191	2	3.21006	4.065545	4.92103	1.5452e-4	4.12141e-7	0.0113252	3.35076e-4
chr10	73062264	73062363	4647495	0	-	0.30303	(0.28,0.32]	chr10	427530	83	INTRON	INTRON	P4HA1	ENSG00000122884.13	ENST00000394890.7:ENST00000307116.6:ENST00000373008.6:ENST00000440381.5:ENST00000263556.3	protein_coding	protein_coding	protein_coding	protein_coding	1	59	2	3.04485	4.065535	5.08622	0.00894006	0.00227525	0.0799922	0.0437013
chr15	44606687	44606784	6164189	0	-	0.319588	(0.28,0.32]	chr15	587347	2	INTRON	INTRON	SPG11	ENSG00000104133.16	ENST00000684235.1:ENST00000261866.12:ENST00000559511.6:ENST00000682065.1:ENST00000682669.1:ENST00000683496.1:ENST00000682460.1:ENST00000682495.1:ENST00000684038.1:ENST00000683186.1:ENST00000683734.1:ENST00000683753.1:ENST00000535302.6:ENST00000427534.6:ENST00000558319.5:ENST00000684676.1:ENST00000682788.1:ENST00000683121.1:ENST00000682915.1:ENST00000558988.5:ENST00000683255.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	59	2	3.04485	4.065535	5.08622	0.00894006	0.00227525	0.0799922	0.0437013
chr3	20164310	20164410	1640641	0	-	0.3	(0.28,0.32]	chr3	168332	27	INTRON	INTRON	SGO1	ENSG00000129810.15	ENST00000306698.6:ENST00000419233.6:ENST00000263753.8:ENST00000425061.5:ENST00000443724.5:ENST00000421451.5:ENST00000452020.5	protein_coding	protein_coding	protein_coding	protein_coding	1	59	2	3.04485	4.065535	5.08622	0.00894006	0.00227525	0.0799922	0.0437013
chr7	12392798	12392896	3485330	0	-	0.285714	(0.28,0.32]	chr7	325964	31	INTRON	INTRON	VWDE	ENSG00000146530.15	ENST00000275358.8:ENST00000452576.6:ENST00000521169.5:ENST00000326715.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	179	2	3.36727	4.065485	4.7637	1.9618e-4	6.01292e-6	0.0122528	0.00184361
chr14	90401613	90401709	5805043	0	+	0.46875	(0.44,0.476]	chr14	550113	1	SS5_PROX	SS5_PROX:INTRON	CALM1	ENSG00000198668.14	ENST00000557020.5:ENST00000356978.9:ENST00000447653.8:ENST00000553995.5:ENST00000553630.1:ENST00000553542.5:ENST00000659177.1:ENST00000553964.5:ENST00000544280.6:ENST00000663135.1:ENST00000555267.1:ENST00000553422.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	68	2	2.78046	4.06539	5.35032	0.0028389	3.02713e-4	0.0473151	0.0155054
chr1	113953486	113953583	192040	0	+	0.391753	(0.378,0.408]	chr1	21160	2	INTRON	INTRON	HIPK1	ENSG00000163349.22	ENST00000426820.7:ENST00000626993.2:ENST00000369559.8:ENST00000369558.5:ENST00000369561.8:ENST00000369555.6:ENST00000340480.8	protein_coding	protein_coding	protein_coding	protein_coding	2	106	2	3.76774	4.06536	4.36298	4.21442e-4	9.6198e-6	0.0189827	0.00224473
chr16	396990	397079	6272013	0	+	0.325843	(0.32,0.35]	chr16	598461	4	UTR5	UTR5:EXON_MRNA	NME4	ENSG00000103202.13	ENST00000397722.5:ENST00000454619.5	protein_coding	protein_coding	protein_coding	protein_coding	1	55	2	2.89743	4.0653500000000005	5.23327	0.0127608	9.33826e-4	0.0926667	0.0278746
chr2	39262451	39262549	1102511	0	-	0.285714	(0.28,0.32]	chr2	118343	13	INTRON	INTRON	MAP4K3	ENSG00000011566.15	ENST00000263881.8:ENST00000437545.5:ENST00000341681.9:ENST00000475457.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	86	2	2.28714	4.06476	5.84238	0.00696126	5.0114e-4	0.0754576	0.0206993
chr17	30501480	30501580	6589307	0	+	0.48	(0.476,0.515]	chr17	640817	55	INTRON	INTRON	GOSR1	ENSG00000108587.16	ENST00000225724.9:ENST00000451249.7:ENST00000427274.6:ENST00000467337.6:ENST00000581721.5:ENST00000414833.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	136	2	3.41747	4.064635	4.7118	1.45317e-4	9.53833e-7	0.0110154	5.54959e-4
chr20	38431594	38431690	7342276	0	-	0.4375	(0.408,0.44]	chr20	748323	6	EXON_LNCRNA	EXON_LNCRNA:SS3_PROX:INTRON	SNHG17	ENSG00000196756.14	ENST00000654008.2:ENST00000658076.1:ENST00000662982.2:ENST00000456953.7:ENST00000654183.2:ENST00000663540.2:ENST00000651115.2:ENST00000660885.2:ENST00000662213.1:ENST00000665233.2:ENST00000666268.2:ENST00000665735.1:ENST00000660558.2:ENST00000691280.1:ENST00000658488.2:ENST00000688336.1:ENST00000668054.2:ENST00000690441.1:ENST00000655520.2:ENST00000687490.1:ENST00000664626.1:ENST00000658051.1:ENST00000668042.1:ENST00000686971.1:ENST00000663187.1:ENST00000657868.1:ENST00000689917.1:ENST00000664073.2:ENST00000653697.1:ENST00000656320.1:ENST00000686814.1:ENST00000417578.7:ENST00000654853.1:ENST00000436764.7:ENST00000668482.2:ENST00000671249.1:ENST00000655692.1:ENST00000693250.1:ENST00000691368.1:ENST00000693227.1:ENST00000690361.1:ENST00000670051.1:ENST00000667912.1:ENST00000693665.1:ENST00000665181.1:ENST00000687532.1:ENST00000691386.1:ENST00000693684.1:ENST00000666331.1:ENST00000669480.1:ENST00000658905.1:ENST00000661252.1:ENST00000669137.1:ENST00000688133.1:ENST00000689414.1:ENST00000691314.1:ENST00000669033.1:ENST00000686145.1:ENST00000653938.1:ENST00000656023.1:ENST00000692262.1:ENST00000414142.5:ENST00000670958.1:ENST00000657216.2:ENST00000664636.1:ENST00000657843.1:ENST00000666419.1:ENST00000413755.5:ENST00000424235.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	2	117	2	3.46104	4.06428	4.66752	0.00105552	3.26573e-6	0.0299229	0.00128387
chr3	56562171	56562269	1434352	0	+	0.5	(0.476,0.515]	chr3	151403	4	INTRON	INTRON	CCDC66	ENSG00000180376.17	ENST00000422222.5:ENST00000460838.5:ENST00000439445.5:ENST00000394672.8:ENST00000326595.11:ENST00000459746.5:ENST00000472582.5:ENST00000434467.5:ENST00000471681.5:ENST00000341455.10:ENST00000422788.5:ENST00000442522.6:ENST00000469966.1:ENST00000484623.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	62	2	2.76855	4.06425	5.35995	0.00244302	7.54256e-4	0.0456956	0.0251179
chr2	113198239	113198326	852683	0	+	0.413793	(0.408,0.44]	chr2	95687	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PSD4	ENSG00000125637.16	ENST00000245796.11:ENST00000418251.6:ENST00000441564.7:ENST00000409656.5:ENST00000409378.1:ENST00000460725.5:ENST00000465592.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	62	2	2.60048	4.064030000000001	5.52758	0.00484324	4.54953e-4	0.0640618	0.0196892
chr1	171509756	171509855	253457	0	+	0.313131	(0.28,0.32]	chr1	30097	3	EXON_MRNA	EXON_MRNA:INTRON	PRRC2C	ENSG00000117523.18	ENST00000647382.2:ENST00000367742.7:ENST00000476522.5:ENST00000338920.8:ENST00000467601.1:ENST00000463586.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	100	2	2.38564	4.06399	5.7423400000000004	0.00230684	7.31742e-4	0.0440898	0.0248722
chr12	50015730	50015830	5322578	0	-	0.44	(0.408,0.44]	chr12	507391	87	INTRON	INTRON	RACGAP1	ENSG00000161800.13	ENST00000312377.10:ENST00000427314.6:ENST00000454520.6:ENST00000551016.5:ENST00000547905.5:ENST00000548320.5:ENST00000548598.5:ENST00000552310.5:ENST00000550149.5:ENST00000546786.5:ENST00000546595.5:ENST00000551145.5:ENST00000548824.5:ENST00000548644.5:ENST00000551260.5:ENST00000546723.5:ENST00000552921.5:ENST00000548247.1:ENST00000552157.5:ENST00000546764.5:ENST00000551876.5:ENST00000549777.5:ENST00000550651.5:ENST00000552004.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	52	2	3.79534	4.06386	4.33238	0.0218901	2.17043e-4	0.11491	0.0129235
chr21	37074764	37074863	7404835	0	+	0.383838	(0.378,0.408]	chr21	754521	9	INTRON	INTRON	TTC3	ENSG00000182670.14	ENST00000492275.6:ENST00000418766.6:ENST00000485402.5:ENST00000450533.6:ENST00000438055.5:ENST00000696812.1:ENST00000696811.1:ENST00000463216.6:ENST00000481605.6:ENST00000540756.5:ENST00000494243.5:ENST00000399010.5:ENST00000411496.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	69	2	2.30628	4.063625	5.82097	0.0163339	3.45471e-5	0.101571	0.00467863
chr10	1007996	1008088	4379198	0	+	0.26087	[0,0.28]	chr10	403859	5	INTRON	INTRON	GTPBP4	ENSG00000107937.19	ENST00000360803.9:ENST00000491635.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	66	2	3.15102	4.063605	4.97619	0.00767596	0.00535756	0.0753665	0.0663076
chr1	246626614	246626713	350589	0	+	0.525253	(0.515,0.57]	chr1	40508	46	INTRON	INTRON	CNST	ENSG00000162852.14	ENST00000483271.1:ENST00000366513.9:ENST00000366512.7:ENST00000366511.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	45	2	3.2024	4.0635650000000005	4.92473	0.00322022	0.00108255	0.0507087	0.0300133
chr1	99755199	99755299	515223	0	-	0.45	(0.44,0.476]	chr1	60409	58	INTRON	INTRON	FRRS1	ENSG00000156869.14	ENST00000646001.2:ENST00000287474.9:ENST00000370176.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	137	2	4.04165	4.0635449999999995	4.08544	7.98065e-5	1.9562e-6	0.00801397	8.48598e-4
chr2	158481298	158481398	897383	0	+	0.3	(0.28,0.32]	chr2	99341	226	INTRON	INTRON	PKP4	ENSG00000144283.23	ENST00000389759.8:ENST00000426248.7:ENST00000389757.7:ENST00000457109.5:ENST00000452162.5:ENST00000411900.5:ENST00000421462.5:ENST00000462335.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	53	2	3.02632	4.063505	5.10069	0.0071944	0.00610574	0.0756118	0.0676501
chr7	136147469	136147569	3431728	0	+	0.29	(0.28,0.32]	chr7	319911	299	INTRON	INTRON	ENSG00000232053	ENSG00000232053.7	ENST00000657456.1:ENST00000668062.1:ENST00000668668.1:ENST00000445293.6:ENST00000659747.1:ENST00000668896.1:ENST00000435996.1	lncRNA	lncRNA	lncRNA	lncRNA	1	53	2	3.02632	4.063505	5.10069	0.0071944	0.00610574	0.0756118	0.0676501
chr17	66356238	66356338	6662834	0	+	0.28	[0,0.28]	chr17	650324	163	INTRON	INTRON	PRKCA	ENSG00000154229.12	ENST00000413366.8:ENST00000578063.5:ENST00000284384.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	58	2	3.18138	4.063495	4.94561	0.0150263	0.00487606	0.0994339	0.0640618
chr5	98929947	98930044	2439356	0	+	0.247423	[0,0.28]	chr5	234121	9	EXON_LNCRNA	EXON_LNCRNA:INTRON	CHD1-DT	ENSG00000248489.3	ENST00000513175.1:ENST00000693407.1:ENST00000692082.1:ENST00000670964.1	lncRNA	lncRNA	lncRNA	lncRNA	1	58	2	3.18138	4.063495	4.94561	0.0150263	0.00487606	0.0994339	0.0640618
chr2	174215071	174215171	1270518	0	-	0.29	(0.28,0.32]	chr2	134282	727	INTRON	INTRON	OLA1	ENSG00000138430.16	ENST00000284719.8:ENST00000344357.9:ENST00000428402.6:ENST00000409546.5:ENST00000429575.1	protein_coding	protein_coding	protein_coding	protein_coding	1	53	2	2.97333	4.063454999999999	5.15358	0.00857834	0.0052282	0.083729	0.0633615
chr7	148732763	148732862	3444029	0	+	0.282828	(0.28,0.32]	chr7	321178	21	INTRON	INTRON	CUL1	ENSG00000055130.18	ENST00000409469.5:ENST00000662716.1:ENST00000665936.1:ENST00000663044.1:ENST00000602748.5:ENST00000663835.1:ENST00000655324.1:ENST00000662132.1:ENST00000325222.9:ENST00000656001.1:ENST00000666124.1:ENST00000671421.1:ENST00000671397.1:ENST00000662670.1:ENST00000660240.1:ENST00000662975.1:ENST00000660013.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	72	2	2.77917	4.06341	5.34765	0.00287138	0.00285651	0.0494641	0.0474836
chr15	64358949	64359048	6204861	0	-	0.383838	(0.378,0.408]	chr15	591782	29	INTRON	INTRON	ENSG00000259316	ENSG00000259316.12	ENST00000634251.1:ENST00000634847.3:ENST00000634318.1:ENST00000635160.1:ENST00000635704.1:ENST00000634529.1:ENST00000635511.1:ENST00000635605.1:ENST00000635593.1:ENST00000634259.2:ENST00000560278.2:ENST00000635413.1:ENST00000634538.1:ENST00000635320.1:ENST00000558783.2	protein_coding	retained_intron	protein_coding	retained_intron:nonsense_mediated_decay:processed_transcript	2	69	2	2.5938	4.063395	5.53299	0.00614976	1.47095e-4	0.0676501	0.0105341
chr5	36913364	36913464	2338796	0	+	0.38	(0.378,0.408]	chr5	225949	270	INTRON	INTRON	NIPBL	ENSG00000164190.19	ENST00000282516.13:ENST00000448238.2:ENST00000652901.1	protein_coding	protein_coding	protein_coding	protein_coding	2	63	2	2.70298	4.063280000000001	5.42358	0.00325723	8.39231e-4	0.0524329	0.0266487
chr9	69253462	69253556	4138950	0	+	0.521277	(0.515,0.57]	chr9	377210	7	UTR3	UTR3:EXON_MRNA:INTRON	TJP2	ENSG00000119139.21	ENST00000636438.1:ENST00000377245.9:ENST00000348208.9:ENST00000649114.1:ENST00000649943.1:ENST00000650333.1:ENST00000650522.1:ENST00000649783.1:ENST00000535702.6:ENST00000649134.1:ENST00000539225.2:ENST00000650084.1:ENST00000650460.1:ENST00000648042.1:ENST00000649927.1:ENST00000498204.2:ENST00000650353.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	159	2	3.63957	4.063245	4.48692	2.92494e-5	4.19165e-8	0.00449807	8.26649e-5
chr10	35457958	35458058	4425722	0	+	0.38	(0.378,0.408]	chr10	407918	21	INTRON	INTRON	CCNY	ENSG00000108100.18	ENST00000374706.5:ENST00000490012.6:ENST00000493157.6:ENST00000374704.8:ENST00000265375.13:ENST00000339497.7:ENST00000492478.5:ENST00000470025.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	63	2	2.65815	4.06324	5.46833	0.00391167	7.05018e-4	0.0569957	0.024224
chr18	36060386	36060486	6963475	0	-	0.4	(0.378,0.408]	chr18	689080	71	INTRON	INTRON	RPRD1A	ENSG00000141425.18	ENST00000399022.9:ENST00000590898.5:ENST00000357384.8:ENST00000588737.5:ENST00000589050.1:ENST00000592674.1:ENST00000588459.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:nonsense_mediated_decay:processed_transcript	2	63	2	2.65815	4.06324	5.46833	0.00391167	7.05018e-4	0.0569957	0.024224
chr1	200609328	200609428	617630	0	-	0.53	(0.515,0.57]	chr1	73075	4	SS3_PROX	SS3_PROX:INTRON	KIF14	ENSG00000118193.12	ENST00000614960.4:ENST00000367350.5	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	4.04086	4.06312	4.08538	0.0253843	0.0197045	0.12011	0.120063
chr1	213137582	213137682	311570	0	+	0.52	(0.515,0.57]	chr1	35945	73	INTRON	INTRON	RPS6KC1	ENSG00000136643.12	ENST00000615329.4:ENST00000543354.5:ENST00000614059.4:ENST00000543470.5:ENST00000366960.8:ENST00000366959.4:ENST00000490299.5:ENST00000468069.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	21	2	4.04086	4.06312	4.08538	0.0253843	0.0197045	0.12011	0.120063
chr1	244451034	244451134	672836	0	-	0.56	(0.515,0.57]	chr1	79580	129	INTRON	INTRON	ADSS2	ENSG00000035687.10	ENST00000366535.4	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	4.04086	4.06312	4.08538	0.0253843	0.0197045	0.12011	0.120063
chr11	46354275	46354374	4784169	0	+	0.525253	(0.515,0.57]	chr11	442417	61	INTRON	INTRON	DGKZ	ENSG00000149091.15	ENST00000343674.10:ENST00000525242.5:ENST00000532868.6:ENST00000528615.5:ENST00000531879.5:ENST00000527674.5:ENST00000524984.5:ENST00000456247.7:ENST00000527911.5:ENST00000533376.5:ENST00000318201.12:ENST00000421244.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	21	2	4.04086	4.06312	4.08538	0.0253843	0.0197045	0.12011	0.120063
chr11	63767818	63767900	4962926	0	-	0.548781	(0.515,0.57]	chr11	467224	3	SS3_PROX	SS3_PROX:INTRON	ZFTA	ENSG00000188070.9	ENST00000433688.2:ENST00000546282.3	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	4.04086	4.06312	4.08538	0.0253843	0.0197045	0.12011	0.120063
chr14	45147544	45147643	5714986	0	+	0.525253	(0.515,0.57]	chr14	542545	65	INTRON	INTRON	FANCM	ENSG00000187790.12	ENST00000267430.10:ENST00000556250.6:ENST00000696641.1:ENST00000556036.6:ENST00000696646.1:ENST00000696647.1:ENST00000542564.6:ENST00000696675.1:ENST00000696642.1:ENST00000696649.1:ENST00000696648.1:ENST00000696662.1:ENST00000696681.1:ENST00000696680.1:ENST00000696657.1:ENST00000696656.1:ENST00000696678.1:ENST00000696679.1:ENST00000696677.1:ENST00000696650.1:ENST00000696643.1:ENST00000696658.1:ENST00000696682.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	21	2	4.04086	4.06312	4.08538	0.0253843	0.0197045	0.12011	0.120063
chr15	64243811	64243911	6203696	0	-	0.52	(0.515,0.57]	chr15	591722	267	INTRON	INTRON	CSNK1G1:ENSG00000259316	ENSG00000169118.18:ENSG00000259316.12	ENST00000303052.13:ENST00000607537.6:ENST00000561349.6:ENST00000635142.1:ENST00000634654.1:ENST00000634811.1:ENST00000606225.1:ENST00000606793.3:ENST00000634251.1:ENST00000634847.3:ENST00000635324.1:ENST00000635270.1:ENST00000635529.1:ENST00000634318.1:ENST00000635514.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	21	2	4.04086	4.06312	4.08538	0.0253843	0.0197045	0.12011	0.120063
chr15	101698132	101698232	6270842	0	-	0.56	(0.515,0.57]	chr15	598161	17	INTRON	INTRON	TARS3	ENSG00000185418.16	ENST00000335968.8:ENST00000558533.5:ENST00000539112.5:ENST00000615656.1:ENST00000557811.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	21	2	4.04086	4.06312	4.08538	0.0253843	0.0197045	0.12011	0.120063
chr17	31941480	31941579	6595721	0	+	0.535354	(0.515,0.57]	chr17	641548	6	INTRON	INTRON	SUZ12	ENSG00000178691.11	ENST00000322652.10:ENST00000580398.1	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	4.04086	4.06312	4.08538	0.0253843	0.0197045	0.12011	0.120063
chr17	64330420	64330519	6814713	0	-	0.525253	(0.515,0.57]	chr17	673615	3	INTRON	INTRON	PECAM1	ENSG00000261371.6	ENST00000563924.6	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	4.04086	4.06312	4.08538	0.0253843	0.0197045	0.12011	0.120063
chr17	66553218	66553318	6664805	0	+	0.52	(0.515,0.57]	chr17	650332	566	INTRON	INTRON	PRKCA	ENSG00000154229.12	ENST00000413366.8:ENST00000578063.5:ENST00000284384.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	21	2	4.04086	4.06312	4.08538	0.0253843	0.0197045	0.12011	0.120063
chr2	32445968	32446068	731688	0	+	0.52	(0.515,0.57]	chr2	84386	3	SS5_PROX	SS5_PROX:INTRON	BIRC6	ENSG00000115760.15	ENST00000421745.7:ENST00000648282.1:ENST00000483194.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	21	2	4.04086	4.06312	4.08538	0.0253843	0.0197045	0.12011	0.120063
chr2	61261848	61261947	1128408	0	-	0.545455	(0.515,0.57]	chr2	121271	17	INTRON	INTRON	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000472706.5:ENST00000453734.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	21	2	4.04086	4.06312	4.08538	0.0253843	0.0197045	0.12011	0.120063
chr21	15047169	15047269	7432084	0	-	0.53	(0.515,0.57]	chr21	757990	32	INTRON	INTRON	NRIP1	ENSG00000180530.11	ENST00000400202.5:ENST00000318948.7:ENST00000400199.5:ENST00000638122.1:ENST00000637963.1:ENST00000637630.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	21	2	4.04086	4.06312	4.08538	0.0253843	0.0197045	0.12011	0.120063
chr22	26539608	26539705	7564556	0	-	0.515464	(0.515,0.57]	chr22	774014	28	INTRON	INTRON	TPST2	ENSG00000128294.16	ENST00000338754.9:ENST00000403880.5:ENST00000398110.6:ENST00000445720.1	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	4.04086	4.06312	4.08538	0.0253843	0.0197045	0.12011	0.120063
chr5	40771318	40771418	2610894	0	-	0.52	(0.515,0.57]	chr5	248246	2	SS5_PROX	SS5_PROX:INTRON	PRKAA1	ENSG00000132356.12	ENST00000397128.7:ENST00000354209.7:ENST00000505783.5:ENST00000506652.5:ENST00000509874.5:ENST00000296800.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	21	2	4.04086	4.06312	4.08538	0.0253843	0.0197045	0.12011	0.120063
chr6	89684682	89684775	3160597	0	-	0.526882	(0.515,0.57]	chr6	294513	4	SS5_PROX	SS5_PROX:INTRON	MDN1	ENSG00000112159.12	ENST00000369393.8:ENST00000629399.2	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	4.04086	4.06312	4.08538	0.0253843	0.0197045	0.12011	0.120063
chr6	159792717	159792816	3022906	0	+	0.535354	(0.515,0.57]	chr6	281998	12	INTRON	INTRON	MRPL18	ENSG00000112110.10	ENST00000476826.5:ENST00000479638.5:ENST00000367034.5:ENST00000480842.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	21	2	4.04086	4.06312	4.08538	0.0253843	0.0197045	0.12011	0.120063
chr7	999577	999675	3460450	0	-	0.520408	(0.515,0.57]	chr7	323558	14	INTRON	INTRON	C7orf50	ENSG00000146540.15	ENST00000357429.10:ENST00000397100.6:ENST00000397098.8:ENST00000412051.5:ENST00000488073.1:ENST00000444428.5:ENST00000491163.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	21	2	4.04086	4.06312	4.08538	0.0253843	0.0197045	0.12011	0.120063
chr1	77609651	77609751	492727	0	-	0.27	[0,0.28]	chr1	58292	246	INTRON	INTRON	ZZZ3	ENSG00000036549.13	ENST00000370801.8:ENST00000481346.5:ENST00000476275.5:ENST00000370798.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	63	2	2.64309	4.063079999999999	5.48307	0.0308646	9.62922e-4	0.13151	0.0285195
chr4	128815267	128815367	2044321	0	+	0.49	(0.476,0.515]	chr4	202988	29	INTRON	INTRON	JADE1	ENSG00000077684.16	ENST00000226319.11:ENST00000511647.5:ENST00000452328.6:ENST00000504089.5:ENST00000512960.5:ENST00000503785.5:ENST00000514740.1:ENST00000610919.4:ENST00000510308.5:ENST00000511925.5:ENST00000413543.6:ENST00000611140.4:ENST00000507833.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	50	2	2.63168	4.06301	5.49434	0.0237106	1.62782e-4	0.118716	0.0109774
chr10	15370055	15370155	4564319	0	-	0.53	(0.515,0.57]	chr10	421171	856	INTRON	INTRON	FAM171A1	ENSG00000148468.17	ENST00000378116.9:ENST00000455654.1	protein_coding	protein_coding	protein_coding	protein_coding	1	46	2	3.35609	4.062965	4.76984	0.00198034	0.00174131	0.0411469	0.0375363
chr14	101891931	101892025	5819824	0	+	0.43617	(0.408,0.44]	chr14	551905	13	INTRON	INTRON	PPP2R5C	ENSG00000078304.20	ENST00000694906.1:ENST00000422945.6:ENST00000328724.9:ENST00000350249.7:ENST00000557621.5:ENST00000334743.9:ENST00000445439.7:ENST00000557095.5:ENST00000554137.5:ENST00000556218.5:ENST00000557534.1:ENST00000557716.2:ENST00000556805.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	85	2	2.15894	4.06281	5.96668	0.00504142	6.36685e-5	0.0646039	0.00711194
chr4	78784209	78784309	1981463	0	+	0.36	(0.35,0.378]	chr4	198463	71	INTRON	INTRON	BMP2K	ENSG00000138756.19	ENST00000389010.7:ENST00000502613.3:ENST00000502871.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	65	2	2.72093	4.06269	5.40445	0.00314173	0.00114224	0.0514466	0.0307966
chr2	53958365	53958465	1120452	0	-	0.26	[0,0.28]	chr2	120102	87	INTRON	INTRON	PSME4	ENSG00000068878.15	ENST00000404125.6:ENST00000389993.7:ENST00000481518.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	59	2	3.30083	4.06258	4.82433	0.0200334	0.00319246	0.109608	0.0520345
chr7	152370967	152371067	3680643	0	-	0.28	[0,0.28]	chr7	341660	119	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000682301.1:ENST00000452749.2:ENST00000680867.1:ENST00000683800.1:ENST00000684278.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	59	2	3.30083	4.06258	4.82433	0.0200334	0.00319246	0.109608	0.0520345
chr15	58699694	58699792	6193013	0	-	0.510204	(0.476,0.515]	chr15	589976	9	INTRON	INTRON	ADAM10	ENSG00000137845.15	ENST00000260408.8:ENST00000402627.5:ENST00000561288.1:ENST00000559053.1:ENST00000558733.5:ENST00000439637.5:ENST00000497846.5:ENST00000558004.1:ENST00000560608.5:ENST00000561149.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	50	2	3.19975	4.06252	4.92529	0.00383299	0.00180221	0.0542786	0.0392772
chr20	5777442	5777542	7229160	0	+	0.46	(0.44,0.476]	chr20	734702	40	INTRON	INTRON	SHLD1	ENSG00000171984.15	ENST00000303142.11:ENST00000445603.1:ENST00000442185.1	protein_coding	protein_coding	protein_coding	protein_coding	1	51	2	3.26669	4.06243	4.85817	0.00305435	0.00223254	0.0493883	0.0435144
chr1	32806281	32806381	416055	0	-	0.46	(0.44,0.476]	chr1	50207	4	SS5_PROX	SS5_PROX:INTRON	YARS1	ENSG00000134684.13	ENST00000373477.9:ENST00000676297.1:ENST00000674654.1:ENST00000674629.1:ENST00000675785.2:ENST00000481895.6:ENST00000616261.2:ENST00000470377.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	63	2	2.981	4.06239	5.14378	0.00184943	9.31193e-4	0.0388609	0.0278746
chr1	174966842	174966939	265230	0	+	0.28866000000000003	(0.28,0.32]	chr1	30933	15	INTRON	INTRON	RABGAP1L	ENSG00000152061.24	ENST00000681986.1:ENST00000325589.9:ENST00000469553.6:ENST00000367687.5:ENST00000347255.6:ENST00000489615.5:ENST00000465412.5:ENST00000392064.6:ENST00000367688.3:ENST00000485114.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	24	2	3.88145	4.0623249999999995	4.2432	0.0561985	0.0479043	0.18407	0.153019
chr1	212772672	212772772	634589	0	-	0.3	(0.28,0.32]	chr1	74955	60	INTRON	INTRON	NSL1	ENSG00000117697.15	ENST00000366977.8:ENST00000366978.5:ENST00000366976.3:ENST00000626725.1	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	3.88145	4.0623249999999995	4.2432	0.0561985	0.0479043	0.18407	0.153019
chr10	27123446	27123546	4585970	0	-	0.31	(0.28,0.32]	chr10	422719	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	YME1L1	ENSG00000136758.20	ENST00000376016.8:ENST00000613434.4:ENST00000326799.7	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	3.88145	4.0623249999999995	4.2432	0.0561985	0.0479043	0.18407	0.153019
chr11	14652451	14652551	4743703	0	+	0.29	(0.28,0.32]	chr11	439279	70	INTRON	INTRON	PDE3B	ENSG00000152270.9	ENST00000282096.9:ENST00000455098.2:ENST00000534317.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	24	2	3.88145	4.0623249999999995	4.2432	0.0561985	0.0479043	0.18407	0.153019
chr11	76877352	76877451	4836937	0	+	0.282828	(0.28,0.32]	chr11	451195	87	INTRON	INTRON	ACER3	ENSG00000078124.13	ENST00000679754.1:ENST00000534206.5:ENST00000679866.1:ENST00000680842.1:ENST00000681257.1:ENST00000681354.1:ENST00000681732.1:ENST00000680583.1:ENST00000532485.6:ENST00000681375.1:ENST00000681004.1:ENST00000525194.5:ENST00000525861.5:ENST00000530182.6:ENST00000531461.5:ENST00000681955.1:ENST00000681411.1:ENST00000679611.1:ENST00000679924.1:ENST00000526597.5:ENST00000681251.1:ENST00000530334.6:ENST00000533873.1:ENST00000531352.5:ENST00000278544.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	24	2	3.88145	4.0623249999999995	4.2432	0.0561985	0.0479043	0.18407	0.153019
chr11	87272755	87272855	4845165	0	+	0.3	(0.28,0.32]	chr11	451868	357	INTRON	INTRON	TMEM135	ENSG00000166575.17	ENST00000340353.11:ENST00000305494.6:ENST00000532959.5:ENST00000525018.5	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	3.88145	4.0623249999999995	4.2432	0.0561985	0.0479043	0.18407	0.153019
chr12	28420722	28420822	5102595	0	+	0.31	(0.28,0.32]	chr12	481989	74	INTRON	INTRON	CCDC91	ENSG00000123106.11	ENST00000540794.5:ENST00000536154.5:ENST00000535520.5:ENST00000539107.5:ENST00000545336.5:ENST00000536442.6:ENST00000543809.5:ENST00000545737.5:ENST00000381259.5:ENST00000540401.5:ENST00000539904.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	24	2	3.88145	4.0623249999999995	4.2432	0.0561985	0.0479043	0.18407	0.153019
chr12	57336124	57336223	5338308	0	-	0.313131	(0.28,0.32]	chr12	510706	253	INTRON	INTRON	R3HDM2	ENSG00000179912.21	ENST00000402412.6:ENST00000347140.7:ENST00000634871.1:ENST00000403821.6:ENST00000448732.1	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	3.88145	4.0623249999999995	4.2432	0.0561985	0.0479043	0.18407	0.153019
chr15	43153212	43153308	6010651	0	+	0.28125	(0.28,0.32]	chr15	572296	9	INTRON	INTRON	TMEM62	ENSG00000137842.7	ENST00000260403.7:ENST00000564494.1	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	3.88145	4.0623249999999995	4.2432	0.0561985	0.0479043	0.18407	0.153019
chr15	63814132	63814232	6200707	0	-	0.29	(0.28,0.32]	chr15	591445	332	INTRON	INTRON	HERC1	ENSG00000103657.14	ENST00000443617.7:ENST00000561400.1:ENST00000559886.1:ENST00000558532.1:ENST00000560462.1:ENST00000560316.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	24	2	3.88145	4.0623249999999995	4.2432	0.0561985	0.0479043	0.18407	0.153019
chr17	44744808	44744907	6616230	0	+	0.282828	(0.28,0.32]	chr17	645259	30	INTRON	INTRON	DBF4B	ENSG00000161692.18	ENST00000393547.6:ENST00000315005.8:ENST00000526924.5:ENST00000527862.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	24	2	3.88145	4.0623249999999995	4.2432	0.0561985	0.0479043	0.18407	0.153019
chr2	45519131	45519231	1112427	0	-	0.3	(0.28,0.32]	chr2	119293	304	INTRON	INTRON	SRBD1	ENSG00000068784.13	ENST00000263736.5:ENST00000475073.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	24	2	3.88145	4.0623249999999995	4.2432	0.0561985	0.0479043	0.18407	0.153019
chr2	97994375	97994475	1186780	0	-	0.32	(0.28,0.32]	chr2	127314	665	INTRON	INTRON	TMEM131	ENSG00000075568.17	ENST00000186436.10:ENST00000418629.6:ENST00000489507.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	24	2	3.88145	4.0623249999999995	4.2432	0.0561985	0.0479043	0.18407	0.153019
chr22	15799153	15799253	7473045	0	+	0.3	(0.28,0.32]	chr22	761953	10	INTRON	INTRON	DUXAP8	ENSG00000206195.11	ENST00000413768.5:ENST00000437781.5:ENST00000383038.7:ENST00000447898.5	lncRNA	lncRNA	lncRNA	lncRNA	0	24	2	3.88145	4.0623249999999995	4.2432	0.0561985	0.0479043	0.18407	0.153019
chr3	37069742	37069840	1655546	0	-	0.316327	(0.28,0.32]	chr3	169896	11	INTRON	INTRON	LRRFIP2	ENSG00000093167.18	ENST00000336686.9:ENST00000354379.8:ENST00000421276.6:ENST00000396428.6:ENST00000440230.5:ENST00000440742.2	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	3.88145	4.0623249999999995	4.2432	0.0561985	0.0479043	0.18407	0.153019
chr4	87355480	87355580	2198917	0	-	0.29	(0.28,0.32]	chr4	215746	145	INTRON	INTRON	HSD17B11	ENSG00000198189.11	ENST00000358290.9:ENST00000507518.5:ENST00000512344.5:ENST00000502576.5:ENST00000507286.1:ENST00000513854.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	24	2	3.88145	4.0623249999999995	4.2432	0.0561985	0.0479043	0.18407	0.153019
chr5	27223131	27223231	2327092	0	+	0.29	(0.28,0.32]	chr5	225078	44	INTRON	INTRON	PURPL	ENSG00000250337.8	ENST00000651409.1:ENST00000650981.1	lncRNA	lncRNA	lncRNA	lncRNA	0	24	2	3.88145	4.0623249999999995	4.2432	0.0561985	0.0479043	0.18407	0.153019
chr5	37625431	37625530	2342858	0	+	0.292929	(0.28,0.32]	chr5	226260	198	INTRON	INTRON	WDR70	ENSG00000082068.9	ENST00000504564.1:ENST00000511906.5:ENST00000265107.9:ENST00000510699.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	24	2	3.88145	4.0623249999999995	4.2432	0.0561985	0.0479043	0.18407	0.153019
chr5	113586468	113586567	2454610	0	+	0.282828	(0.28,0.32]	chr5	235271	16	INTRON	INTRON	YTHDC2	ENSG00000047188.16	ENST00000161863.9:ENST00000512600.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	24	2	3.88145	4.0623249999999995	4.2432	0.0561985	0.0479043	0.18407	0.153019
chr6	35026844	35026944	2850659	0	+	0.29	(0.28,0.32]	chr6	269284	84	INTRON	INTRON	ANKS1A	ENSG00000064999.15	ENST00000360359.5:ENST00000649117.1	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	3.88145	4.0623249999999995	4.2432	0.0561985	0.0479043	0.18407	0.153019
chr6	100870525	100870624	3171037	0	-	0.313131	(0.28,0.32]	chr6	295791	21	INTRON	INTRON	ASCC3	ENSG00000112249.14	ENST00000369162.7:ENST00000324696.8:ENST00000522650.5:ENST00000468245.2:ENST00000324723.10:ENST00000369143.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	24	2	3.88145	4.0623249999999995	4.2432	0.0561985	0.0479043	0.18407	0.153019
chr6	160065694	160065792	3023973	0	+	0.306122	(0.28,0.32]	chr6	282173	4	INTRON	INTRON	IGF2R	ENSG00000197081.16	ENST00000676781.1:ENST00000677704.1:ENST00000356956.6:ENST00000650503.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	24	2	3.88145	4.0623249999999995	4.2432	0.0561985	0.0479043	0.18407	0.153019
chr8	15754713	15754812	3706294	0	+	0.282828	(0.28,0.32]	chr8	343612	59	INTRON	INTRON	TUSC3	ENSG00000104723.21	ENST00000382020.8:ENST00000515859.5:ENST00000506802.5:ENST00000503731.6:ENST00000510836.5:ENST00000511783.2:ENST00000508446.1:ENST00000507316.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	24	2	3.88145	4.0623249999999995	4.2432	0.0561985	0.0479043	0.18407	0.153019
chr9	5779055	5779155	4230673	0	-	0.3	(0.28,0.32]	chr9	388888	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	ERMP1	ENSG00000099219.15	ENST00000688202.1:ENST00000689364.1:ENST00000690284.1:ENST00000689268.1:ENST00000487088.6:ENST00000689030.1:ENST00000688887.1:ENST00000693487.1:ENST00000462592.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	24	2	3.88145	4.0623249999999995	4.2432	0.0561985	0.0479043	0.18407	0.153019
chrX	136985801	136985901	7728236	0	+	0.29	(0.28,0.32]	chrX	790798	220	INTRON	INTRON	TM9SF5P	ENSG00000234062.9	ENST00000650669.2:ENST00000687469.1:ENST00000431464.6:ENST00000685550.1:ENST00000685929.1:ENST00000424306.5:ENST00000687978.1:ENST00000688713.1:ENST00000693626.1:ENST00000686432.1:ENST00000693698.1:ENST00000426943.4	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	24	2	3.88145	4.0623249999999995	4.2432	0.0561985	0.0479043	0.18407	0.153019
chr9	135948405	135948504	4372439	0	-	0.606061	(0.57,1]	chr9	402541	1	INTRON	INTRON	UBAC1	ENSG00000130560.9	ENST00000371756.4:ENST00000478485.1:ENST00000486258.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	50	2	2.37366	4.06221	5.75076	0.00373392	1.73259e-6	0.0535844	7.91759e-4
chr4	159250587	159250687	2074984	0	+	0.26	[0,0.28]	chr4	205218	64	INTRON	INTRON	RAPGEF2	ENSG00000109756.10	ENST00000644474.1:ENST00000691494.1:ENST00000505478.5:ENST00000504604.5:ENST00000644902.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	121	2	1.55329	4.06217	6.57105	0.058079	7.00302e-6	0.167723	0.00187943
chr10	91959608	91959684	4489094	0	+	0.394737	(0.378,0.408]	chr10	413334	4	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	BTAF1	ENSG00000095564.15	ENST00000265990.12:ENST00000471217.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	63	2	2.74646	4.0619250000000005	5.37739	0.00271684	0.0010014	0.0481064	0.0288906
chr15	29765667	29765765	6124848	0	-	0.428571	(0.408,0.44]	chr15	583556	29	INTRON	INTRON	TJP1	ENSG00000104067.17	ENST00000346128.10:ENST00000614355.5:ENST00000400011.6:ENST00000356107.11:ENST00000677774.1:ENST00000545208.6:ENST00000495972.6	protein_coding	protein_coding	protein_coding	protein_coding	2	67	2	2.40661	4.06189	5.71717	0.011475	5.09043e-5	0.0888882	0.00585477
chr19	39434829	39434926	7182448	0	-	0.319588	(0.28,0.32]	chr19	726281	12	EXON_MRNA	EXON_MRNA:INTRON	RPS16	ENSG00000105193.9	ENST00000251453.8:ENST00000339471.8:ENST00000599539.5:ENST00000601655.5:ENST00000601390.1:ENST00000599705.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	84	2	2.87233	4.06187	5.25141	0.0028269	0.00125199	0.0472361	0.0328543
chr10	101797339	101797437	4680757	0	-	0.326531	(0.32,0.35]	chr10	431971	4	UTR3	UTR3:EXON_MRNA:INTRON	OGA	ENSG00000198408.14	ENST00000439817.5:ENST00000361464.8:ENST00000357797.9:ENST00000482611.5:ENST00000479811.5:ENST00000370094.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	309	2	3.64449	4.06184	4.47919	1.53679e-5	1.53443e-8	0.00314781	4.33644e-5
chr10	77925716	77925816	4654784	0	-	0.53	(0.515,0.57]	chr10	428777	1	SS5_PROX	SS5_PROX:INTRON	DLG5	ENSG00000151208.17	ENST00000372391.7	protein_coding	protein_coding	protein_coding	protein_coding	2	90	2	3.88616	4.06179	4.23742	1.07993e-4	2.14737e-5	0.00878438	0.00377331
chr6	154758003	154758102	3002063	0	+	0.464646	(0.44,0.476]	chr6	280737	156	INTRON	INTRON	SCAF8	ENSG00000213079.10	ENST00000367186.7:ENST00000417268.3:ENST00000461219.5:ENST00000367178.8:ENST00000464628.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	47	2	3.36231	4.061495	4.76068	0.00653414	0.00161678	0.0699952	0.0369204
chr2	233553291	233553389	1343498	0	-	0.295918	(0.28,0.32]	chr2	140773	14	INTRON	INTRON	USP40	ENSG00000085982.15	ENST00000450966.5:ENST00000251722.10:ENST00000678225.2:ENST00000427112.6	protein_coding	protein_coding	protein_coding	protein_coding	1	53	2	2.91832	4.06146	5.2046	0.0102484	0.00448664	0.089002	0.0593175
chr5	104105602	104105702	2441471	0	+	0.24	[0,0.28]	chr5	234410	3	INTRON	INTRON	LINC02163	ENSG00000251026.2	ENST00000662211.1:ENST00000666145.1	lncRNA	lncRNA	lncRNA	lncRNA	3	95	2	1.95669	4.0614349999999995	6.16618	0.0237518	3.33131e-4	0.129075	0.016912
chr1	46299415	46299510	442878	0	-	0.515789	(0.515,0.57]	chr1	53649	12	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	LRRC41	ENSG00000132128.18	ENST00000617190.5:ENST00000343304.10:ENST00000615587.4:ENST00000472710.2:ENST00000498402.2:ENST00000469150.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	86	2	1.97876	4.061315	6.14387	0.00610685	6.48417e-6	0.0706941	0.00192811
chr8	47818527	47818621	3944265	0	-	0.382979	(0.378,0.408]	chr8	361611	6	INTRON	INTRON	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7	protein_coding	protein_coding	protein_coding	protein_coding	3	77	2	2.14029	4.061115	5.98194	0.0106742	7.66211e-5	0.0917199	0.00781006
chr8	28190488	28190583	3723216	0	+	0.442105	(0.44,0.476]	chr8	346123	9	UTR3	UTR3:EXON_MRNA	ELP3	ENSG00000134014.17	ENST00000521015.5:ENST00000380353.8:ENST00000537665.2:ENST00000256398.13	protein_coding	protein_coding	protein_coding	protein_coding	1	47	2	2.81896	4.06093	5.3029	0.0120766	0.00102616	0.0962311	0.029231300000000002
chr5	32161958	32162058	2597392	0	-	0.43	(0.408,0.44]	chr5	246744	177	INTRON	INTRON	GOLPH3	ENSG00000113384.14	ENST00000265070.7:ENST00000503610.5:ENST00000512668.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	104	2	3.62972	4.060755	4.49179	7.19047e-4	3.94825e-6	0.0246202	0.00131614
chr6	87184247	87184347	2913545	0	+	0.37	(0.35,0.378]	chr6	275281	140	INTRON	INTRON	ZNF292	ENSG00000188994.13	ENST00000369577.8:ENST00000369578.6:ENST00000518845.1:ENST00000339907.8:ENST00000496806.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	111	2	3.70296	4.0606349999999996	4.41831	6.20319e-4	7.98766e-6	0.0229151	0.00202605
chr10	96069281	96069381	4673516	0	-	0.42	(0.408,0.44]	chr10	430643	260	INTRON	INTRON	ENTPD1-AS1	ENSG00000226688.8	ENST00000669711.1:ENST00000416301.5:ENST00000451364.5:ENST00000671323.1:ENST00000656604.1:ENST00000452728.5:ENST00000684888.1:ENST00000454638.5:ENST00000668038.1:ENST00000686747.1:ENST00000693608.1:ENST00000458228.5:ENST00000691417.1:ENST00000427846.1	lncRNA	lncRNA	lncRNA	lncRNA	1	50	2	3.05705	4.06024	5.06343	0.00658331	0.00101725	0.0701901	0.0293497
chrX	110085114	110085214	7700862	0	+	0.41	(0.408,0.44]	chrX	788144	25	INTRON	INTRON	TMEM164	ENSG00000157600.12	ENST00000372072.7:ENST00000372073.5:ENST00000372068.7:ENST00000288381.4:ENST00000461715.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	50	2	3.05705	4.06024	5.06343	0.00658331	0.00101725	0.0701901	0.0293497
chr11	68558065	68558130	4818321	0	+	0.261538	[0,0.28]	chr11	448972	1	SS3_PROX	SS3_PROX:INTRON	PPP6R3	ENSG00000110075.15	ENST00000534534.5:ENST00000524845.5:ENST00000393800.7:ENST00000265637.8:ENST00000524904.5:ENST00000393801.7:ENST00000265636.9:ENST00000529710.5:ENST00000527403.6	protein_coding	protein_coding	protein_coding	protein_coding	5	119	2	2.00464	4.06001	6.11538	0.00797197	4.03843e-4	0.0798772	0.0185763
chr12	132870526	132870623	5450671	0	-	0.494845	(0.476,0.515]	chr12	522218	3	SS5_PROX	SS5_PROX:INTRON	CHFR	ENSG00000072609.18	ENST00000450056.7:ENST00000266880.11:ENST00000443047.6:ENST00000315585.11:ENST00000432561.6:ENST00000541817.5:ENST00000540963.1:ENST00000540537.5:ENST00000542714.5:ENST00000536932.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	63	2	2.96824	4.0598350000000005	5.15143	0.00166579	9.98194e-4	0.0369207	0.0290732
chr1	55199207	55199307	465743	0	-	0.49	(0.476,0.515]	chr1	56290	207	INTRON	INTRON	USP24	ENSG00000162402.14	ENST00000294383.7	protein_coding	protein_coding	protein_coding	protein_coding	1	49	2	2.82673	4.05977	5.29281	0.0134403	4.07635e-4	0.0946278	0.0181306
chr18	215686	215778	6938492	0	-	0.5	(0.476,0.515]	chr18	686226	3	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	THOC1	ENSG00000079134.13	ENST00000261600.11:ENST00000579232.5:ENST00000580038.5:ENST00000578529.5:ENST00000583228.5:ENST00000577429.5:ENST00000631280.2:ENST00000584470.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	49	2	2.82673	4.05977	5.29281	0.0134403	4.07635e-4	0.0946278	0.0181306
chr17	57434209	57434308	6634536	0	+	0.515152	(0.476,0.515]	chr17	648049	17	INTRON	INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000674961.1:ENST00000582453.5:ENST00000675656.1:ENST00000322684.7:ENST00000442934.6:ENST00000579180.2:ENST00000579205.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	49	2	2.99852	4.059620000000001	5.12072	0.0077575	8.42139e-4	0.0757402	0.0263691
chr2	61520090	61520190	1131038	0	-	0.39	(0.378,0.408]	chr2	121607	3	SS5_PROX	SS5_PROX:INTRON	XPO1	ENSG00000082898.19	ENST00000676553.1:ENST00000677556.1:ENST00000677814.1:ENST00000676771.1:ENST00000677803.1:ENST00000677239.1:ENST00000678790.1:ENST00000677928.1:ENST00000678182.1:ENST00000677150.1:ENST00000678172.1:ENST00000678360.1:ENST00000678081.1:ENST00000676889.1:ENST00000676783.1:ENST00000679035.1:ENST00000677422.1:ENST00000677417.1:ENST00000677813.1:ENST00000676999.1:ENST00000676667.1:ENST00000678263.1:ENST00000678877.1:ENST00000677933.1:ENST00000680228.1:ENST00000677289.1:ENST00000677190.1:ENST00000401558.7:ENST00000428210.5:ENST00000677290.1:ENST00000677850.1:ENST00000451765.6:ENST00000676789.1:ENST00000678741.1:ENST00000404992.6:ENST00000406957.5:ENST00000443240.5:ENST00000476585.5:ENST00000468259.1:ENST00000420673.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	78	2	2.78931	4.059495	5.32968	0.00119786	6.20851e-4	0.0315806	0.0223951
chr1	27797207	27797307	54750	0	+	0.49	(0.476,0.515]	chr1	7062	32	INTRON	INTRON	STX12	ENSG00000117758.14	ENST00000373943.9:ENST00000440806.2:ENST00000468761.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	22	2	4.01777	4.05945	4.10113	0.0411361	0.0226984	0.1451	0.124921
chr1	42196445	42196543	431038	0	-	0.489796	(0.476,0.515]	chr1	52292	10	INTRON	INTRON	FOXJ3	ENSG00000198815.9	ENST00000372573.5:ENST00000372572.5:ENST00000361776.5:ENST00000545068.5:ENST00000361346.6:ENST00000445886.5:ENST00000422278.1	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	4.01777	4.05945	4.10113	0.0411361	0.0226984	0.1451	0.124921
chr10	96061495	96061595	4673438	0	-	0.48	(0.476,0.515]	chr10	430643	182	INTRON	INTRON	ENTPD1-AS1	ENSG00000226688.8	ENST00000669711.1:ENST00000416301.5:ENST00000451364.5:ENST00000671323.1:ENST00000656604.1:ENST00000452728.5:ENST00000684888.1:ENST00000454638.5:ENST00000668038.1:ENST00000686747.1:ENST00000693608.1:ENST00000458228.5:ENST00000691417.1:ENST00000427846.1	lncRNA	lncRNA	lncRNA	lncRNA	0	22	2	4.01777	4.05945	4.10113	0.0411361	0.0226984	0.1451	0.124921
chr12	12119457	12119555	5269552	0	-	0.510204	(0.476,0.515]	chr12	502275	36	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	LRP6	ENSG00000070018.9	ENST00000261349.9:ENST00000538239.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	22	2	4.01777	4.05945	4.10113	0.0411361	0.0226984	0.1451	0.124921
chr13	114048265	114048364	5654026	0	-	0.50505	(0.476,0.515]	chr13	538941	68	INTRON	INTRON	RASA3	ENSG00000185989.11	ENST00000334062.8	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	4.01777	4.05945	4.10113	0.0411361	0.0226984	0.1451	0.124921
chr15	42862714	42862813	6158422	0	-	0.50505	(0.476,0.515]	chr15	586287	48	INTRON	INTRON	TTBK2	ENSG00000128881.18	ENST00000267890.11:ENST00000567840.5:ENST00000567274.5:ENST00000564431.5:ENST00000562880.5:ENST00000566931.1:ENST00000567485.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	22	2	4.01777	4.05945	4.10113	0.0411361	0.0226984	0.1451	0.124921
chr15	58828687	58828786	6037317	0	+	0.494949	(0.476,0.515]	chr15	574937	65	INTRON	INTRON	MINDY2	ENSG00000128923.11	ENST00000316848.9:ENST00000560289.5:ENST00000559228.6:ENST00000450403.3:ENST00000559745.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	22	2	4.01777	4.05945	4.10113	0.0411361	0.0226984	0.1451	0.124921
chr15	65510021	65510119	6207980	0	-	0.479592	(0.476,0.515]	chr15	592326	23	INTRON	INTRON	DPP8	ENSG00000074603.19	ENST00000341861.9:ENST00000300141.11:ENST00000358939.8:ENST00000321147.10:ENST00000559233.5:ENST00000395652.7:ENST00000559526.5:ENST00000558529.1:ENST00000560436.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	22	2	4.01777	4.05945	4.10113	0.0411361	0.0226984	0.1451	0.124921
chr16	74366242	74366341	6523530	0	-	0.494949	(0.476,0.515]	chr16	631626	50	INTRON	INTRON	PDPR2P	ENSG00000214331.8	ENST00000566802.5:ENST00000429810.2	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron	0	22	2	4.01777	4.05945	4.10113	0.0411361	0.0226984	0.1451	0.124921
chr18	3005029	3005129	6945019	0	-	0.48	(0.476,0.515]	chr18	686840	223	INTRON	INTRON	LPIN2	ENSG00000101577.10	ENST00000261596.8:ENST00000677752.1	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	4.01777	4.05945	4.10113	0.0411361	0.0226984	0.1451	0.124921
chr2	47467308	47467406	774177	0	+	0.510204	(0.476,0.515]	chr2	87291	1	INTRON	INTRON	MSH2	ENSG00000095002.15	ENST00000543555.6:ENST00000644092.1:ENST00000645339.1:ENST00000646415.1:ENST00000645506.1:ENST00000406134.5:ENST00000233146.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	22	2	4.01777	4.05945	4.10113	0.0411361	0.0226984	0.1451	0.124921
chr2	63882959	63883059	796399	0	+	0.48	(0.476,0.515]	chr2	89034	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	UGP2	ENSG00000169764.16	ENST00000466642.5:ENST00000394417.7:ENST00000467648.6:ENST00000613823.2:ENST00000487469.5:ENST00000676870.1:ENST00000678298.1:ENST00000677841.1:ENST00000676780.1:ENST00000678951.1:ENST00000678974.1:ENST00000475550.5:ENST00000337130.10:ENST00000497883.5:ENST00000445915.6:ENST00000496334.6:ENST00000467999.6:ENST00000475462.5:ENST00000487042.5:ENST00000491621.5:ENST00000472047.5:ENST00000679256.1:ENST00000495020.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	22	2	4.01777	4.05945	4.10113	0.0411361	0.0226984	0.1451	0.124921
chr2	239985715	239985815	1345319	0	-	0.49	(0.476,0.515]	chr2	141052	16	INTRON	INTRON	NDUFA10	ENSG00000130414.13	ENST00000419408.5:ENST00000679183.1:ENST00000677057.1:ENST00000676782.1:ENST00000677407.1:ENST00000676929.1:ENST00000678455.1:ENST00000252711.7:ENST00000677692.1:ENST00000476216.6:ENST00000677395.1:ENST00000678188.1:ENST00000677979.1:ENST00000678914.1:ENST00000678562.1:ENST00000678832.1:ENST00000677155.1:ENST00000677764.1:ENST00000677294.1:ENST00000678468.1:ENST00000677324.1:ENST00000678158.1:ENST00000676491.1:ENST00000677114.1:ENST00000404554.5:ENST00000620965.5:ENST00000485344.6:ENST00000679308.1:ENST00000677567.1:ENST00000679158.1:ENST00000443626.5:ENST00000444548.6:ENST00000448880.6:ENST00000677490.1:ENST00000307300.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	22	2	4.01777	4.05945	4.10113	0.0411361	0.0226984	0.1451	0.124921
chr3	11792871	11792970	1615533	0	-	0.50505	(0.476,0.515]	chr3	166756	19	INTRON	INTRON	TAMM41	ENSG00000144559.11	ENST00000273037.9:ENST00000455809.6:ENST00000498127.5:ENST00000457498.5:ENST00000486090.1:ENST00000414736.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	22	2	4.01777	4.05945	4.10113	0.0411361	0.0226984	0.1451	0.124921
chr3	195350393	195350493	1894983	0	-	0.49	(0.476,0.515]	chr3	189664	47	INTRON	INTRON	ACAP2	ENSG00000114331.16	ENST00000326793.11:ENST00000635383.1:ENST00000423531.3:ENST00000480906.5:ENST00000481463.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	22	2	4.01777	4.05945	4.10113	0.0411361	0.0226984	0.1451	0.124921
chr4	40101289	40101384	1954310	0	+	0.484211	(0.476,0.515]	chr4	195701	8	INTRON	INTRON	N4BP2	ENSG00000078177.14	ENST00000261435.11:ENST00000511480.5:ENST00000515550.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	22	2	4.01777	4.05945	4.10113	0.0411361	0.0226984	0.1451	0.124921
chr5	19044496	19044596	2569510	0	-	0.51	(0.476,0.515]	chr5	246210	58	INTRON	INTRON	ENSG00000249174	ENSG00000249174.1	ENST00000504827.1	lncRNA	lncRNA	lncRNA	lncRNA	0	22	2	4.01777	4.05945	4.10113	0.0411361	0.0226984	0.1451	0.124921
chr5	134162891	134162990	2726213	0	-	0.484848	(0.476,0.515]	chr5	256488	11	INTRON	INTRON	SKP1	ENSG00000113558.19	ENST00000353411.11:ENST00000522552.5:ENST00000521216.5:ENST00000517625.5:ENST00000523966.5:ENST00000522855.5:ENST00000328392.10:ENST00000519054.5:ENST00000519321.5:ENST00000520417.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	22	2	4.01777	4.05945	4.10113	0.0411361	0.0226984	0.1451	0.124921
chr6	111275110	111275210	2939937	0	+	0.49	(0.476,0.515]	chr6	276923	81	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	MFSD4B	ENSG00000173214.7	ENST00000671876.2:ENST00000672750.1:ENST00000672191.1:ENST00000671883.1:ENST00000673446.1:ENST00000444259.2:ENST00000653951.2:ENST00000673245.1:ENST00000673164.1:ENST00000658925.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	22	2	4.01777	4.05945	4.10113	0.0411361	0.0226984	0.1451	0.124921
chr7	30333334	30333434	3300917	0	+	0.48	(0.476,0.515]	chr7	306479	92	INTRON	INTRON	ZNRF2	ENSG00000180233.11	ENST00000323037.5	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	4.01777	4.05945	4.10113	0.0411361	0.0226984	0.1451	0.124921
chr7	135468000	135468100	3648540	0	-	0.48	(0.476,0.515]	chr7	339187	292	INTRON	INTRON	CNOT4	ENSG00000080802.20	ENST00000541284.6:ENST00000451834.5:ENST00000423368.6:ENST00000361528.8:ENST00000428680.6:ENST00000315544.6:ENST00000491203.5:ENST00000498534.5:ENST00000465721.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	22	2	4.01777	4.05945	4.10113	0.0411361	0.0226984	0.1451	0.124921
chr7	149212571	149212671	3445506	0	+	0.49	(0.476,0.515]	chr7	321390	1	SS5_PROX	SS5_PROX:INTRON	ZNF282	ENSG00000170265.12	ENST00000610704.5:ENST00000479907.1:ENST00000470381.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	22	2	4.01777	4.05945	4.10113	0.0411361	0.0226984	0.1451	0.124921
chr8	89733138	89733238	3985036	0	-	0.5	(0.476,0.515]	chr8	364998	71	INTRON	INTRON	RIPK2-DT	ENSG00000251136.10	ENST00000688654.1:ENST00000690564.1:ENST00000661105.1:ENST00000685145.1:ENST00000519655.6:ENST00000656898.2:ENST00000685787.1:ENST00000693018.1:ENST00000691313.1:ENST00000691446.1:ENST00000524190.2:ENST00000691897.1:ENST00000685988.1:ENST00000691595.1:ENST00000688855.1:ENST00000504145.6:ENST00000685619.1:ENST00000653574.1:ENST00000687824.1:ENST00000521996.2:ENST00000692782.1:ENST00000655144.2:ENST00000687204.1:ENST00000689241.1:ENST00000686009.1:ENST00000685448.1	lncRNA	lncRNA	lncRNA	lncRNA	0	22	2	4.01777	4.05945	4.10113	0.0411361	0.0226984	0.1451	0.124921
chr8	102282115	102282212	4011400	0	-	0.494845	(0.476,0.515]	chr8	367049	2	INTRON	INTRON	UBR5	ENSG00000104517.13	ENST00000520539.6:ENST00000220959.8:ENST00000521922.5	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	4.01777	4.05945	4.10113	0.0411361	0.0226984	0.1451	0.124921
chrX	71481686	71481786	7679427	0	+	0.51	(0.476,0.515]	chrX	786347	153	INTRON	INTRON	TAF1	ENSG00000147133.17	ENST00000683668.1:ENST00000373775.8:ENST00000485087.6:ENST00000437147.8:ENST00000683358.1:ENST00000682124.1:ENST00000461764.6:ENST00000462588.5:ENST00000468167.6:ENST00000467309.5	protein_coding	retained_intron	protein_coding	retained_intron:nonsense_mediated_decay	0	22	2	4.01777	4.05945	4.10113	0.0411361	0.0226984	0.1451	0.124921
chr11	472099	472199	4719122	0	+	0.6	(0.57,1]	chr11	436010	112	INTRON	INTRON	PTDSS2	ENSG00000174915.12	ENST00000532614.5:ENST00000308020.6:ENST00000531520.5:ENST00000525727.5:ENST00000527479.5:ENST00000526878.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	31	2	3.31859	4.05935	4.80011	0.00137292	6.07135e-4	0.0340241	0.0226059
chr19	29954295	29954394	7047674	0	+	0.232323	[0,0.28]	chr19	702657	113	INTRON	INTRON	URI1	ENSG00000105176.18	ENST00000360605.8:ENST00000570564.5:ENST00000574233.5:ENST00000392271.6:ENST00000574110.5:ENST00000574666.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	57	2	2.95729	4.059295	5.1613	0.0101824	0.00866441	0.089002	0.0787025
chr9	129491826	129491925	4209834	0	+	0.414141	(0.408,0.44]	chr9	385754	3	INTRON	INTRON	LINC00963	ENSG00000204054.14	ENST00000653047.1:ENST00000454968.5:ENST00000652803.1:ENST00000444184.6:ENST00000658785.1:ENST00000656664.1:ENST00000666282.1:ENST00000663727.1:ENST00000663000.1:ENST00000666041.1:ENST00000657306.1:ENST00000668074.1:ENST00000656234.1:ENST00000662331.1:ENST00000654822.1:ENST00000659188.1:ENST00000658175.1:ENST00000654204.1:ENST00000659535.1:ENST00000653700.1:ENST00000667047.1:ENST00000665998.1:ENST00000664811.1:ENST00000665880.1:ENST00000662047.1:ENST00000671609.1:ENST00000671555.1:ENST00000655787.1:ENST00000419300.3:ENST00000423918.5:ENST00000661101.1:ENST00000666559.1:ENST00000668919.1:ENST00000654131.1:ENST00000653386.1:ENST00000655962.1:ENST00000659690.1:ENST00000657389.1:ENST00000668206.1:ENST00000669088.1:ENST00000654286.1:ENST00000658999.1:ENST00000624138.4:ENST00000454635.6:ENST00000625171.4:ENST00000624390.1:ENST00000622972.3:ENST00000624009.3:ENST00000669210.1:ENST00000412141.2	lncRNA	lncRNA	lncRNA	lncRNA	2	67	2	2.57295	4.05928	5.54561	0.00640423	1.20601e-4	0.0694534	0.00938389
chr15	56938087	56938187	6032306	0	+	0.26	[0,0.28]	chr15	574663	166	INTRON	INTRON	TCF12	ENSG00000140262.18	ENST00000438423.6:ENST00000267811.9:ENST00000333725.10:ENST00000560190.5:ENST00000559609.5:ENST00000558908.5:ENST00000557843.5:ENST00000557947.5:ENST00000561152.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	57	2	2.90797	4.059255	5.21054	0.0118539	0.00758653	0.0962115	0.0749063
chr11	9236461	9236561	4908783	0	-	0.43	(0.408,0.44]	chr11	460107	285	INTRON	INTRON	DENND5A	ENSG00000184014.9	ENST00000328194.8:ENST00000681203.1:ENST00000530780.2:ENST00000679999.1:ENST00000680470.1:ENST00000680554.1:ENST00000681425.1:ENST00000679568.1:ENST00000679446.1:ENST00000680294.1:ENST00000680742.1:ENST00000680885.1:ENST00000530044.5:ENST00000526707.5:ENST00000532696.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	163	2	3.66293	4.059125	4.45532	1.13168e-5	3.11579e-6	0.00266636	0.00114097
chr11	3005065	3005165	4892050	0	-	0.4	(0.378,0.408]	chr11	458402	3	SS5_PROX	SS5_PROX:INTRON	CARS1	ENSG00000110619.18	ENST00000397111.9:ENST00000531387.5:ENST00000380525.9:ENST00000278224.13:ENST00000484484.5:ENST00000529772.5:ENST00000526890.5:ENST00000470221.6:ENST00000466442.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	48	2	3.3797	4.059045	4.73839	0.00837252	0.00154501	0.0774402	0.0362716
chr19	29963837	29963936	7047770	0	+	0.40404	(0.378,0.408]	chr19	702663	54	INTRON	INTRON	URI1	ENSG00000105176.18	ENST00000360605.8:ENST00000570564.5:ENST00000574233.5:ENST00000392271.6:ENST00000574110.5:ENST00000574666.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	48	2	3.3797	4.059045	4.73839	0.00837252	0.00154501	0.0774402	0.0362716
chr9	35058775	35058871	4247323	0	-	0.395833	(0.378,0.408]	chr9	390733	14	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	VCP	ENSG00000165280.18	ENST00000679902.1:ENST00000678465.1:ENST00000677257.1:ENST00000679800.1:ENST00000678018.1:ENST00000678650.1:ENST00000448530.6:ENST00000358901.11:ENST00000679647.1:ENST00000681335.1:ENST00000417448.2:ENST00000680916.1:ENST00000679599.1:ENST00000679862.1:ENST00000681690.1:ENST00000679204.2:ENST00000676836.2:ENST00000493886.5:ENST00000479300.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	48	2	3.3797	4.059045	4.73839	0.00837252	0.00154501	0.0774402	0.0362716
chr3	43464124	43464224	1673855	0	-	0.39	(0.378,0.408]	chr3	170972	310	INTRON	INTRON	ANO10	ENSG00000160746.13	ENST00000292246.8:ENST00000350459.8:ENST00000396091.7:ENST00000414522.6:ENST00000451430.6:ENST00000448045.1	protein_coding	protein_coding	protein_coding	protein_coding	1	47	2	3.05393	4.059025	5.06412	0.00551532	0.0030522	0.0672816	0.0493883
chr9	123910900	123911000	4345834	0	-	0.4	(0.378,0.408]	chr9	399137	315	INTRON	INTRON	DENND1A	ENSG00000119522.17	ENST00000373624.6:ENST00000394215.7:ENST00000373620.7:ENST00000373618.1	protein_coding	protein_coding	protein_coding	protein_coding	1	47	2	3.05393	4.059025	5.06412	0.00551532	0.0030522	0.0672816	0.0493883
chr3	138692719	138692817	1830062	0	-	0.326531	(0.32,0.35]	chr3	183972	12	INTRON	INTRON	PIK3CB	ENSG00000051382.9	ENST00000674063.1:ENST00000289153.6:ENST00000477593.5:ENST00000469284.6:ENST00000544716.5:ENST00000462898.5:ENST00000481749.5:ENST00000493568.5:ENST00000473435.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	53	2	3.49869	4.05879	4.61889	0.0166646	0.00108004	0.102621	0.0300133
chr1	32821587	32821685	66600	0	+	0.418367	(0.408,0.44]	chr1	8534	6	INTRON	INTRON	S100PBP	ENSG00000116497.18	ENST00000530710.5:ENST00000373476.5:ENST00000529027.5:ENST00000531123.5:ENST00000356689.7:ENST00000373475.10:ENST00000526230.1:ENST00000531256.1:ENST00000482212.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	74	2	2.42808	4.05867	5.68926	0.00331055	2.2853e-4	0.0527031	0.0138641
chr7	121177033	121177133	3395539	0	+	0.4	(0.378,0.408]	chr7	317781	270	INTRON	INTRON	CPED1	ENSG00000106034.18	ENST00000310396.10:ENST00000450913.6:ENST00000423795.5:ENST00000466055.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	250	2	2.90389	4.05853	5.21317	1.45532e-5	1.27504e-7	0.00285856	1.71798e-4
chr11	58595560	58595660	4793908	0	+	0.43	(0.408,0.44]	chr11	443838	103	INTRON	INTRON	ZFP91	ENSG00000186660.15	ENST00000316059.7	protein_coding	protein_coding	protein_coding	protein_coding	2	102	2	3.84859	4.058375	4.26816	2.66911e-4	1.58618e-5	0.0149989	0.00300937
chr7	73002423	73002520	3554145	0	-	0.391753	(0.378,0.408]	chr7	330661	16	INTRON	INTRON	STAG3L3	ENSG00000174353.17	ENST00000436857.5:ENST00000428423.5:ENST00000608210.5:ENST00000448173.5:ENST00000423834.6:ENST00000569650.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	1	48	2	2.78705	4.058365	5.32968	0.0135539	0.00119786	0.101363	0.0315806
chr8	41731980	41732080	3938402	0	-	0.34	(0.32,0.35]	chr8	361111	36	INTRON	INTRON	ANK1	ENSG00000029534.21	ENST00000347528.8:ENST00000265709.13:ENST00000289734.13	protein_coding	protein_coding	protein_coding	protein_coding	2	74	2	2.38582	4.05833	5.73084	0.0138529	1.07676e-4	0.0953077	0.00878438
chr1	15895843	15895943	35146	0	+	0.44	(0.408,0.44]	chr1	4272	188	INTRON	INTRON	SPEN	ENSG00000065526.12	ENST00000673875.1:ENST00000375759.8:ENST00000438066.1:ENST00000442985.1	protein_coding	protein_coding	protein_coding	protein_coding	3	74	2	2.38928	4.058135	5.72699	0.0039105	1.93446e-4	0.0569957	0.0127226
chr11	68557481	68557578	4818315	0	+	0.391753	(0.378,0.408]	chr11	448971	29	INTRON	INTRON	PPP6R3	ENSG00000110075.15	ENST00000534534.5:ENST00000524845.5:ENST00000393800.7:ENST00000265637.8:ENST00000524904.5:ENST00000393801.7:ENST00000265636.9:ENST00000529710.5:ENST00000527403.6	protein_coding	protein_coding	protein_coding	protein_coding	6	217	2	2.72507	4.058115	5.39116	2.6355e-4	6.9248e-9	0.0149561	2.82262e-5
chr4	55608152	55608245	2150414	0	-	0.268817	[0,0.28]	chr4	211623	3	INTRON	INTRON	NMU	ENSG00000109255.11	ENST00000511469.5:ENST00000264218.7:ENST00000505262.5:ENST00000507338.1:ENST00000515325.5:ENST00000509371.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	77	2	2.52489	4.0580549999999995	5.59122	0.0084136	0.00247649	0.082518	0.0446195
chr1	153880225	153880325	557338	0	-	0.47	(0.44,0.476]	chr1	65983	515	INTRON	INTRON	GATAD2B	ENSG00000143614.10	ENST00000368655.5:ENST00000634544.1:ENST00000634408.1:ENST00000634401.1:ENST00000634791.1:ENST00000636014.1:ENST00000637331.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	22	2	4.01038	4.05789	4.1054	0.0433743	0.0220205	0.148082	0.123836
chr10	26730182	26730281	4412840	0	+	0.444444	(0.44,0.476]	chr10	406939	57	INTRON	INTRON	PDSS1	ENSG00000148459.16	ENST00000376215.10:ENST00000491711.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	22	2	4.01038	4.05789	4.1054	0.0433743	0.0220205	0.148082	0.123836
chr11	74241548	74241648	4827236	0	+	0.46	(0.44,0.476]	chr11	450499	19	INTRON	INTRON	PPME1	ENSG00000214517.10	ENST00000328257.13:ENST00000398427.6:ENST00000543525.3:ENST00000535205.5:ENST00000541340.5:ENST00000538501.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	22	2	4.01038	4.05789	4.1054	0.0433743	0.0220205	0.148082	0.123836
chr11	125633948	125634046	4883069	0	+	0.44898	(0.44,0.476]	chr11	456575	2	INTRON	INTRON	CHEK1	ENSG00000149554.14	ENST00000438015.7:ENST00000427383.6:ENST00000428830.6:ENST00000544373.5:ENST00000278916.8:ENST00000532669.5:ENST00000527013.6:ENST00000532449.6:ENST00000531062.2:ENST00000534070.5:ENST00000524737.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	22	2	4.01038	4.05789	4.1054	0.0433743	0.0220205	0.148082	0.123836
chr12	111666485	111666584	5413490	0	-	0.454545	(0.44,0.476]	chr12	516994	3	INTRON	INTRON	BRAP	ENSG00000089234.16	ENST00000419234.9:ENST00000327551.6:ENST00000547043.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	22	2	4.01038	4.05789	4.1054	0.0433743	0.0220205	0.148082	0.123836
chr14	81188319	81188419	5935565	0	-	0.45	(0.44,0.476]	chr14	564120	23	INTRON	INTRON	GTF2A1	ENSG00000165417.12	ENST00000553612.6:ENST00000298173.7:ENST00000434192.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	22	2	4.01038	4.05789	4.1054	0.0433743	0.0220205	0.148082	0.123836
chr14	95120529	95120628	5964941	0	-	0.474747	(0.44,0.476]	chr14	566558	24	INTRON	INTRON	DICER1	ENSG00000100697.16	ENST00000343455.8:ENST00000529720.2:ENST00000674628.2:ENST00000675540.2:ENST00000531162.7:ENST00000526495.6:ENST00000696734.1:ENST00000696733.1:ENST00000393063.6:ENST00000675995.1:ENST00000527414.5:ENST00000541352.5:ENST00000556045.6:ENST00000696736.1:ENST00000532939.3:ENST00000696737.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	22	2	4.01038	4.05789	4.1054	0.0433743	0.0220205	0.148082	0.123836
chr14	103469402	103469502	5826499	0	+	0.46	(0.44,0.476]	chr14	552901	2	INTRON	INTRON	MARK3	ENSG00000075413.19	ENST00000678179.1:ENST00000676838.1:ENST00000677348.1:ENST00000677404.1:ENST00000676694.1:ENST00000676938.1:ENST00000678619.1:ENST00000676897.1:ENST00000677214.1:ENST00000677942.1:ENST00000676830.1:ENST00000678999.1:ENST00000677228.1:ENST00000556744.2:ENST00000677104.1:ENST00000679330.1:ENST00000560417.6:ENST00000440884.7:ENST00000676475.1:ENST00000677035.1:ENST00000678022.1:ENST00000677560.1:ENST00000561314.6:ENST00000429436.7:ENST00000677118.1:ENST00000676564.1:ENST00000678169.1:ENST00000678175.1:ENST00000678897.1:ENST00000678278.1:ENST00000676645.1:ENST00000677829.1:ENST00000678302.1:ENST00000677133.1:ENST00000678207.1:ENST00000677360.1:ENST00000676905.1:ENST00000678343.1:ENST00000677347.1:ENST00000678071.1:ENST00000677432.1:ENST00000678237.1:ENST00000677604.1:ENST00000676518.1:ENST00000677051.1:ENST00000677857.1:ENST00000677869.1:ENST00000416682.6:ENST00000303622.13:ENST00000216288.11:ENST00000679105.1:ENST00000553942.5:ENST00000335102.9:ENST00000678091.1:ENST00000561071.5:ENST00000676745.1:ENST00000554627.5:ENST00000559274.1:ENST00000677410.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	22	2	4.01038	4.05789	4.1054	0.0433743	0.0220205	0.148082	0.123836
chr15	72216315	72216413	6219168	0	-	0.44898	(0.44,0.476]	chr15	593558	55	INTRON	INTRON	PKM	ENSG00000067225.20	ENST00000319622.10:ENST00000389093.7:ENST00000335181.10:ENST00000565184.6:ENST00000567118.5:ENST00000565154.6:ENST00000568459.5:ENST00000561609.5:ENST00000569857.5:ENST00000562784.1:ENST00000564178.5:ENST00000562997.5:ENST00000567087.5:ENST00000564276.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	22	2	4.01038	4.05789	4.1054	0.0433743	0.0220205	0.148082	0.123836
chr16	70130882	70130963	6383602	0	+	0.444444	(0.44,0.476]	chr16	613480	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PDPR	ENSG00000090857.14	ENST00000288050.9:ENST00000561920.5:ENST00000568530.5:ENST00000398122.7:ENST00000565186.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	22	2	4.01038	4.05789	4.1054	0.0433743	0.0220205	0.148082	0.123836
chr17	50706724	50706823	6795298	0	-	0.464646	(0.44,0.476]	chr17	670788	57	INTRON	INTRON	ANKRD40	ENSG00000154945.7	ENST00000285243.7:ENST00000507114.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	22	2	4.01038	4.05789	4.1054	0.0433743	0.0220205	0.148082	0.123836
chr17	59182357	59182456	6640217	0	+	0.444444	(0.44,0.476]	chr17	648298	121	INTRON	INTRON	PRR11	ENSG00000068489.13	ENST00000578777.5:ENST00000262293.9:ENST00000578542.5:ENST00000582995.5:ENST00000581182.1:ENST00000580177.5:ENST00000614081.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	22	2	4.01038	4.05789	4.1054	0.0433743	0.0220205	0.148082	0.123836
chr17	72904261	72904360	6833064	0	-	0.454545	(0.44,0.476]	chr17	675178	541	INTRON	INTRON	SLC39A11	ENSG00000133195.12	ENST00000255559.8:ENST00000542342.6:ENST00000582769.5:ENST00000579491.1:ENST00000584129.1:ENST00000579732.5:ENST00000580557.5:ENST00000583146.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	22	2	4.01038	4.05789	4.1054	0.0433743	0.0220205	0.148082	0.123836
chr17	81583022	81583121	6849049	0	-	0.454545	(0.44,0.476]	chr17	678158	106	INTRON	INTRON	NPLOC4	ENSG00000182446.14	ENST00000331134.11:ENST00000374747.9:ENST00000574897.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	22	2	4.01038	4.05789	4.1054	0.0433743	0.0220205	0.148082	0.123836
chr18	2762736	2762836	6865981	0	+	0.45	(0.44,0.476]	chr18	680145	6	EXON_MRNA	EXON_MRNA:INTRON	SMCHD1	ENSG00000101596.17	ENST00000320876.11:ENST00000688342.1:ENST00000693213.1:ENST00000577880.5:ENST00000584897.5:ENST00000686763.1:ENST00000686864.1:ENST00000688708.1:ENST00000645355.1:ENST00000688964.1:ENST00000685656.1:ENST00000689034.1:ENST00000693522.1:ENST00000583344.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	22	2	4.01038	4.05789	4.1054	0.0433743	0.0220205	0.148082	0.123836
chr19	9813030	9813130	7133972	0	-	0.45	(0.44,0.476]	chr19	718988	4	SS5_PROX	SS5_PROX:INTRON	FBXL12	ENSG00000127452.9	ENST00000589626.5:ENST00000586651.5:ENST00000247977.9:ENST00000588922.5:ENST00000585379.5:ENST00000591009.1:ENST00000592732.5:ENST00000589438.1:ENST00000592067.1:ENST00000590808.1:ENST00000590277.1:ENST00000586469.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	22	2	4.01038	4.05789	4.1054	0.0433743	0.0220205	0.148082	0.123836
chr2	85045507	85045603	821013	0	+	0.447917	(0.44,0.476]	chr2	91444	15	INTRON	INTRON	KCMF1	ENSG00000176407.18	ENST00000409785.9:ENST00000453448.1	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	4.01038	4.05789	4.1054	0.0433743	0.0220205	0.148082	0.123836
chr20	4870652	4870751	7309654	0	-	0.454545	(0.44,0.476]	chr20	744354	2	INTRON	INTRON	SLC23A2	ENSG00000089057.15	ENST00000379333.5:ENST00000338244.6:ENST00000423430.1:ENST00000468355.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	22	2	4.01038	4.05789	4.1054	0.0433743	0.0220205	0.148082	0.123836
chr20	36734163	36734262	7337532	0	-	0.444444	(0.44,0.476]	chr20	747631	120	INTRON	INTRON	NDRG3	ENSG00000101079.21	ENST00000359675.6:ENST00000373803.6:ENST00000349004.6	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	4.01038	4.05789	4.1054	0.0433743	0.0220205	0.148082	0.123836
chr20	41091799	41091885	7274144	0	+	0.44186	(0.44,0.476]	chr20	739255	1	SS5_PROX	SS5_PROX:INTRON	TOP1	ENSG00000198900.7	ENST00000361337.3:ENST00000681113.1:ENST00000681058.1:ENST00000681392.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	22	2	4.01038	4.05789	4.1054	0.0433743	0.0220205	0.148082	0.123836
chr21	44083621	44083711	7415763	0	+	0.444444	(0.44,0.476]	chr21	755865	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TRAPPC10	ENSG00000160218.13	ENST00000291574.9:ENST00000422875.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	22	2	4.01038	4.05789	4.1054	0.0433743	0.0220205	0.148082	0.123836
chr4	102829857	102829956	2213393	0	-	0.444444	(0.44,0.476]	chr4	216779	18	INTRON	INTRON	UBE2D3	ENSG00000109332.20	ENST00000338145.7:ENST00000357194.10:ENST00000508238.5	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	4.01038	4.05789	4.1054	0.0433743	0.0220205	0.148082	0.123836
chr4	153549072	153549172	2068079	0	+	0.47	(0.44,0.476]	chr4	204567	748	INTRON	INTRON	TMEM131L	ENSG00000121210.16	ENST00000409663.7:ENST00000445960.5:ENST00000409959.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	22	2	4.01038	4.05789	4.1054	0.0433743	0.0220205	0.148082	0.123836
chr4	158860648	158860744	2073013	0	+	0.458333	(0.44,0.476]	chr4	205125	6	INTRON	INTRON	FNIP2	ENSG00000052795.13	ENST00000264433.11:ENST00000512986.5	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	4.01038	4.05789	4.1054	0.0433743	0.0220205	0.148082	0.123836
chr5	136139947	136140046	2492903	0	+	0.454545	(0.44,0.476]	chr5	238135	56	INTRON	INTRON	SMAD5	ENSG00000113658.18	ENST00000545279.6:ENST00000545620.5:ENST00000511116.5:ENST00000507118.5:ENST00000514777.1:ENST00000509297.6:ENST00000509962.5:ENST00000515005.1:ENST00000506223.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	22	2	4.01038	4.05789	4.1054	0.0433743	0.0220205	0.148082	0.123836
chr6	42634727	42634822	2865779	0	+	0.442105	(0.44,0.476]	chr6	271089	15	INTRON	INTRON	UBR2	ENSG00000024048.11	ENST00000372899.6:ENST00000372901.2	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	4.01038	4.05789	4.1054	0.0433743	0.0220205	0.148082	0.123836
chr6	157383465	157383565	3011565	0	+	0.45	(0.44,0.476]	chr6	281268	8	INTRON	INTRON	ZDHHC14	ENSG00000175048.17	ENST00000414563.6:ENST00000359775.10	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	4.01038	4.05789	4.1054	0.0433743	0.0220205	0.148082	0.123836
chr8	31085746	31085841	3728462	0	+	0.463158	(0.44,0.476]	chr8	346582	1	INTRON	INTRON	WRN	ENSG00000165392.11	ENST00000650667.1:ENST00000298139.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	22	2	4.01038	4.05789	4.1054	0.0433743	0.0220205	0.148082	0.123836
chr8	42036590	42036690	3941152	0	-	0.45	(0.44,0.476]	chr8	361223	487	INTRON	INTRON	KAT6A	ENSG00000083168.11	ENST00000406337.6:ENST00000265713.8:ENST00000396930.4:ENST00000648335.1:ENST00000649827.1:ENST00000485568.5:ENST00000647809.1:ENST00000648030.1:ENST00000650356.1:ENST00000470574.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	22	2	4.01038	4.05789	4.1054	0.0433743	0.0220205	0.148082	0.123836
chr9	123661162	123661262	4343327	0	-	0.45	(0.44,0.476]	chr9	399090	87	INTRON	INTRON	DENND1A	ENSG00000119522.17	ENST00000373624.6:ENST00000473039.5:ENST00000394215.7:ENST00000373620.7:ENST00000373618.1:ENST00000474676.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	22	2	4.01038	4.05789	4.1054	0.0433743	0.0220205	0.148082	0.123836
chrX	18330086	18330186	7770811	0	-	0.47	(0.44,0.476]	chrX	794201	1	SS5_PROX	SS5_PROX:INTRON	SCML2	ENSG00000102098.19	ENST00000251900.9	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	4.01038	4.05789	4.1054	0.0433743	0.0220205	0.148082	0.123836
chrX	54008339	54008438	7822657	0	-	0.454545	(0.44,0.476]	chrX	798354	53	INTRON	INTRON	PHF8	ENSG00000172943.21	ENST00000357988.9:ENST00000338154.11:ENST00000686349.1:ENST00000687764.1:ENST00000338946.11:ENST00000691629.1:ENST00000396282.7:ENST00000443302.5:ENST00000322659.12:ENST00000413386.5:ENST00000490635.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	22	2	4.01038	4.05789	4.1054	0.0433743	0.0220205	0.148082	0.123836
chr3	150623852	150623944	1534657	0	+	0.293478	(0.28,0.32]	chr3	159949	3	INTRON	INTRON	SELENOT	ENSG00000198843.14	ENST00000480740.5:ENST00000477889.5:ENST00000471696.6:ENST00000492132.1:ENST00000485923.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	53	2	3.1268	4.05776	4.98872	0.00838468	0.00508956	0.0774402	0.0646039
chr4	48346117	48346217	1957068	0	+	0.31	(0.28,0.32]	chr4	196116	36	INTRON	INTRON	SLAIN2	ENSG00000109171.15	ENST00000264313.11	protein_coding	protein_coding	protein_coding	protein_coding	1	53	2	3.1268	4.05776	4.98872	0.00838468	0.00508956	0.0774402	0.0646039
chr2	107710810	107710910	1205657	0	-	0.26	[0,0.28]	chr2	128526	71	INTRON	INTRON	LINC01885:ENSG00000286769	ENSG00000237880.2:ENSG00000286769.1	ENST00000654481.1:ENST00000669817.1	lncRNA	lncRNA	lncRNA	lncRNA	1	57	2	2.8569	4.057525	5.25815	0.013822	0.0066548	0.10247	0.0703807
chr8	92874720	92874820	3990853	0	-	0.27	[0,0.28]	chr8	365358	883	INTRON	INTRON	FLJ46284	ENSG00000248858.7	ENST00000504861.2	lncRNA	lncRNA	lncRNA	lncRNA	2	77	2	2.45042	4.057075	5.66373	0.010819	0.00196371	0.0920575	0.0401678
chr9	137644253	137644352	4223726	0	+	0.333333	(0.32,0.35]	chr9	388158	63	INTRON	INTRON	EHMT1	ENSG00000181090.21	ENST00000462484.5:ENST00000371394.6:ENST00000630754.2:ENST00000460843.6:ENST00000626216.2:ENST00000637593.1:ENST00000629335.2:ENST00000637335.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	51	2	3.28107	4.05697	4.83287	0.0095071	0.00262488	0.0817766	0.0470772
chr10	124758726	124758825	4712210	0	-	0.282828	(0.28,0.32]	chr10	434793	26	UTR3	UTR3:EXON_MRNA:INTRON	EEF1AKMT2	ENSG00000203791.15	ENST00000495711.2:ENST00000652548.1:ENST00000466270.5:ENST00000368836.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	71	2	2.59504	4.05686	5.51868	0.00582473	0.00162747	0.0687439	0.0367966
chr7	92254614	92254713	3352878	0	+	0.282828	(0.28,0.32]	chr7	312479	77	INTRON	INTRON	ANKIB1	ENSG00000001629.10	ENST00000265742.8	protein_coding	protein_coding	protein_coding	protein_coding	2	71	2	2.55521	4.05683	5.55845	0.0067419	0.00141854	0.0739405	0.0340865
chr3	45697160	45697260	1417116	0	+	0.4	(0.378,0.408]	chr3	148654	64	INTRON	INTRON	SACM1L	ENSG00000211456.13	ENST00000464524.5:ENST00000455997.5:ENST00000418611.5:ENST00000672477.1:ENST00000463237.5:ENST00000441228.5:ENST00000463347.5:ENST00000438671.3:ENST00000389061.10:ENST00000445499.2:ENST00000478586.3:ENST00000672858.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	47	2	3.17089	4.0566949999999995	4.9425	0.00452675	0.00357279	0.0595107	0.0548435
chr3	172072909	172073008	1559877	0	+	0.40404	(0.378,0.408]	chr3	161527	256	INTRON	INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000421757.5:ENST00000469491.5:ENST00000336824.8:ENST00000423424.5:ENST00000416957.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	47	2	3.17089	4.0566949999999995	4.9425	0.00452675	0.00357279	0.0595107	0.0548435
chr8	29057100	29057198	3726544	0	+	0.418367	(0.408,0.44]	chr8	346338	13	EXON_LNCRNA	EXON_LNCRNA:INTRON	HMBOX1:ENSG00000259366	ENSG00000147421.18:ENSG00000259366.2	ENST00000522468.1:ENST00000687917.1:ENST00000687452.1	protein_coding	nonsense_mediated_decay	protein_coding:lncRNA	nonsense_mediated_decay:lncRNA	3	74	2	2.5027	4.05669	5.61068	0.00238178	3.21002e-4	0.0449397	0.0165409
chr1	202806876	202806976	620736	0	-	0.62	(0.57,1]	chr1	73675	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	KDM5B	ENSG00000117139.18	ENST00000367265.9:ENST00000648338.1:ENST00000649542.1:ENST00000647757.1:ENST00000367264.7:ENST00000648473.1:ENST00000650569.1:ENST00000648056.1:ENST00000649770.1:ENST00000648469.1:ENST00000650417.1:ENST00000235790.9:ENST00000648738.1:ENST00000648958.1:ENST00000602511.1:ENST00000650368.1:ENST00000649200.1:ENST00000648354.1:ENST00000650493.1:ENST00000467487.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	56	2	2.77701	4.056545	5.33608	1.54125e-4	3.92497e-5	0.0106835	0.00533644
chr14	105297949	105298049	5974324	0	-	0.38	(0.378,0.408]	chr14	568053	112	INTRON	INTRON	BRF1	ENSG00000185024.18	ENST00000547530.7:ENST00000379937.6:ENST00000619151.4:ENST00000327359.7:ENST00000440513.7:ENST00000546417.5:ENST00000550692.1:ENST00000548421.2	protein_coding	protein_coding	protein_coding	protein_coding	1	47	2	2.9917	4.05649	5.12128	0.0068789	0.00251746	0.0749442	0.0446195
chr5	109372827	109372927	2701995	0	-	0.45	(0.44,0.476]	chr5	254340	37	INTRON	INTRON	PJA2	ENSG00000198961.10	ENST00000361557.4:ENST00000361189.7	protein_coding	protein_coding	protein_coding	protein_coding	1	46	2	3.08591	4.05647	5.02703	0.00481262	0.00278015	0.0638089	0.0469265
chr12	49526352	49526450	5134564	0	+	0.336735	(0.32,0.35]	chr12	484082	2	UTR3	UTR3:EXON_MRNA	SPATS2	ENSG00000123352.18	ENST00000549412.5:ENST00000552918.6:ENST00000553127.5:ENST00000321898.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	55	2	2.6321	4.056465	5.48083	0.0268	3.35843e-4	0.123349	0.0162819
chr15	65173356	65173456	6206482	0	-	0.35	(0.32,0.35]	chr15	592133	62	INTRON	INTRON	CLPX	ENSG00000166855.9	ENST00000300107.7:ENST00000559152.5:ENST00000558958.1:ENST00000559218.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	55	2	2.6321	4.056465	5.48083	0.0268	3.35843e-4	0.123349	0.0162819
chr7	157147728	157147828	3454027	0	+	0.35	(0.32,0.35]	chr7	322895	80	INTRON	INTRON	UBE3C	ENSG00000009335.18	ENST00000611269.4:ENST00000348165.10:ENST00000389103.4:ENST00000430750.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	55	2	2.6321	4.056465	5.48083	0.0268	3.35843e-4	0.123349	0.0162819
chr6	17703581	17703681	3066181	0	-	0.33	(0.32,0.35]	chr6	284872	146	INTRON	INTRON	NUP153	ENSG00000124789.12	ENST00000613258.4:ENST00000537253.5:ENST00000262077.3	protein_coding	protein_coding	protein_coding	protein_coding	1	51	2	2.78073	4.056455	5.33218	0.01481	0.00204346	0.106702	0.04086
chr7	135482589	135482689	3648686	0	-	0.31	(0.28,0.32]	chr7	339187	438	INTRON	INTRON	CNOT4	ENSG00000080802.20	ENST00000541284.6:ENST00000451834.5:ENST00000423368.6:ENST00000361528.8:ENST00000428680.6:ENST00000315544.6:ENST00000491203.5:ENST00000498534.5:ENST00000465721.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	59	2	2.45545	4.0562000000000005	5.65695	0.0438092	2.41184e-4	0.14901	0.0136674
chr13	20072837	20072937	5453601	0	+	0.28	[0,0.28]	chr13	522569	46	INTRON	INTRON	ZMYM2	ENSG00000121741.17	ENST00000382874.6:ENST00000610343.5:ENST00000382871.3:ENST00000382883.7:ENST00000382870.7:ENST00000494061.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	63	2	2.54624	4.056175	5.56611	0.0388449	7.02173e-4	0.143072	0.0241881
chr1	174287448	174287548	258400	0	+	0.33	(0.32,0.35]	chr1	30796	83	INTRON	INTRON	RABGAP1L	ENSG00000152061.24	ENST00000357444.10:ENST00000251507.8:ENST00000681986.1:ENST00000457696.1:ENST00000367690.5	protein_coding	protein_coding	protein_coding	protein_coding	1	55	2	2.99125	4.05612	5.12099	0.00958447	0.00143632	0.0820838	0.0347139
chr20	50527480	50527580	7286085	0	+	0.47	(0.44,0.476]	chr20	741241	165	INTRON	INTRON	PTPN1	ENSG00000196396.10	ENST00000541713.5:ENST00000371621.5	protein_coding	protein_coding	protein_coding	protein_coding	2	68	2	2.81462	4.055925	5.29723	0.00247064	3.83422e-4	0.0446195	0.017699199999999998
chr3	37064851	37064948	1655494	0	-	0.525773	(0.515,0.57]	chr3	169889	12	EXON_MRNA	EXON_MRNA:INTRON	LRRFIP2	ENSG00000093167.18	ENST00000336686.9:ENST00000354379.8:ENST00000421276.6:ENST00000460646.5:ENST00000496479.5:ENST00000396428.6:ENST00000440230.5:ENST00000440742.2:ENST00000487246.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	56	2	2.68132	4.0557549999999996	5.43019	0.00324198	2.60422e-4	0.0524329	0.0148796
chr7	155751150	155751250	3452979	0	+	0.32	(0.28,0.32]	chr7	322730	41	INTRON	INTRON	RBM33	ENSG00000184863.11	ENST00000401878.8:ENST00000392761.3:ENST00000438356.1:ENST00000341148.7	protein_coding	protein_coding	protein_coding	protein_coding	1	54	2	3.30893	4.05574	4.80255	0.0137406	0.00260504	0.0949306	0.0470772
chr1	2287902	2288002	2763	0	+	0.5	(0.476,0.515]	chr1	557	395	INTRON	INTRON	SKI	ENSG00000157933.10	ENST00000378536.5:ENST00000508416.1:ENST00000478223.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	62	2	2.85177	4.05561	5.25945	0.00169916	0.00111445	0.0381936	0.0306328
chr1	235431969	235432064	340333	0	+	0.431579	(0.408,0.44]	chr1	39597	8	INTRON	INTRON	TBCE	ENSG00000285053.1:ENSG00000284770.2	ENST00000644055.1:ENST00000645655.1:ENST00000647428.1:ENST00000643418.1:ENST00000646624.1:ENST00000647186.1:ENST00000646528.1:ENST00000645351.1:ENST00000643410.1:ENST00000645205.1:ENST00000645836.1:ENST00000642503.1:ENST00000646281.1:ENST00000644680.1:ENST00000645578.1:ENST00000642431.1:ENST00000644604.1:ENST00000651186.1:ENST00000643125.1:ENST00000406207.5:ENST00000642463.1:ENST00000645899.1:ENST00000647233.1:ENST00000644578.1:ENST00000647418.1:ENST00000645372.1:ENST00000645582.1:ENST00000643994.1:ENST00000642610.2:ENST00000644037.1:ENST00000646463.1:ENST00000366601.8:ENST00000643524.1:ENST00000646536.1:ENST00000643142.1:ENST00000644838.1:ENST00000646286.1:ENST00000646186.1:ENST00000643615.1:ENST00000543662.4:ENST00000646848.1:ENST00000647332.1:ENST00000645551.1:ENST00000646821.1:ENST00000472011.6:ENST00000643238.1:ENST00000646104.1:ENST00000645662.1:ENST00000643993.1:ENST00000645964.1:ENST00000642339.1:ENST00000644217.1:ENST00000642372.1:ENST00000644265.1:ENST00000482230.6:ENST00000644910.1:ENST00000461651.1:ENST00000646842.1:ENST00000647322.1:ENST00000646495.1:ENST00000644126.1:ENST00000643487.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	67	2	2.6117	4.05552	5.49934	0.00555224	1.5076e-4	0.0648867	0.0106137
chr19	7962300	7962399	7130369	0	-	0.292929	(0.28,0.32]	chr19	718354	8	UTR3	UTR3:EXON_MRNA:INTRON	ELAVL1	ENSG00000066044.15	ENST00000407627.7:ENST00000596154.5	protein_coding	protein_coding	protein_coding	protein_coding	4	98	2	2.03152	4.05552	6.07952	0.00983556	1.93993e-4	0.0877296	0.0127226
chr2	38297000	38297100	1098519	0	-	0.26	[0,0.28]	chr2	117794	3	SS3_PROX	SS3_PROX:INTRON	ATL2	ENSG00000119787.14	ENST00000378954.9:ENST00000406122.5:ENST00000405384.6:ENST00000402054.5:ENST00000419554.6:ENST00000651368.1:ENST00000452935.6:ENST00000629272.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	77	2	2.5957	4.055289999999999	5.51488	0.00656974	0.00314116	0.0736092	0.0500389
chr1	23057765	23057865	44151	0	+	0.39	(0.378,0.408]	chr1	5288	2	SS5_PROX	SS5_PROX:INTRON	KDM1A	ENSG00000004487.18	ENST00000692214.1:ENST00000686934.1:ENST00000689853.1:ENST00000465864.2:ENST00000691256.1:ENST00000688122.1:ENST00000692056.1:ENST00000692853.1:ENST00000689366.1:ENST00000686270.1:ENST00000685102.1:ENST00000690627.1:ENST00000686771.1:ENST00000692209.1:ENST00000686339.1:ENST00000691813.1:ENST00000693156.1:ENST00000688235.1:ENST00000692975.1:ENST00000687202.1:ENST00000691682.1:ENST00000691404.1:ENST00000691694.1:ENST00000688680.1:ENST00000356634.7:ENST00000400181.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	63	2	2.82967	4.055	5.28033	0.00189968	0.00143651	0.0402736	0.0340925
chr10	86492713	86492812	4659072	0	-	0.494949	(0.476,0.515]	chr10	429282	184	INTRON	INTRON	WAPL	ENSG00000062650.20	ENST00000298767.10	protein_coding	protein_coding	protein_coding	protein_coding	1	49	2	3.05152	4.054995	5.05847	0.0064848	0.00108081	0.0699952	0.0300133
chr19	1367909	1368004	6994838	0	+	0.505263	(0.476,0.515]	chr19	693084	3	INTRON	INTRON	PWWP3A	ENSG00000160953.17	ENST00000591337.7:ENST00000591433.6:ENST00000591806.6:ENST00000652273.1:ENST00000415183.7:ENST00000587460.6:ENST00000627377.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	49	2	3.05152	4.054995	5.05847	0.0064848	0.00108081	0.0699952	0.0300133
chr6	43623233	43623328	3097528	0	-	0.526316	(0.515,0.57]	chr6	290163	4	EXON_LNCRNA	EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GTPBP2	ENSG00000172432.19	ENST00000307114.11:ENST00000476510.5:ENST00000307126.10:ENST00000459959.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	157	2	3.92893	4.05493	4.18093	2.90076e-6	8.72574e-7	0.00109346	5.74603e-4
chr1	12239629	12239728	28321	0	+	0.414141	(0.408,0.44]	chr1	3381	49	INTRON	INTRON	VPS13D	ENSG00000048707.15	ENST00000620676.6:ENST00000613099.4	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	4.00385	4.054895	4.10594	0.0454568	0.0219367	0.149888	0.123836
chr10	120862305	120862377	4531454	0	+	0.430556	(0.408,0.44]	chr10	418096	2	SS3_PROX	SS3_PROX:INTRON	WDR11	ENSG00000120008.16	ENST00000263461.11:ENST00000605543.5:ENST00000605069.5:ENST00000605178.5:ENST00000604585.5:ENST00000497136.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	22	2	4.00385	4.054895	4.10594	0.0454568	0.0219367	0.149888	0.123836
chr11	27445636	27445736	4937151	0	-	0.41	(0.408,0.44]	chr11	462402	324	INTRON	INTRON	LGR4	ENSG00000205213.14	ENST00000379214.9:ENST00000389858.4:ENST00000480977.2	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	4.00385	4.054895	4.10594	0.0454568	0.0219367	0.149888	0.123836
chr11	72046725	72046825	4976496	0	-	0.41	(0.408,0.44]	chr11	470118	47	INTRON	INTRON	NUMA1	ENSG00000137497.19	ENST00000393695.8:ENST00000358965.10:ENST00000351960.10:ENST00000613205.4:ENST00000537217.5:ENST00000540843.5:ENST00000534987.5:ENST00000543937.5:ENST00000535087.5:ENST00000368959.9:ENST00000541719.5:ENST00000366394.7:ENST00000541641.5:ENST00000537905.5:ENST00000535111.5:ENST00000535838.5:ENST00000546131.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	22	2	4.00385	4.054895	4.10594	0.0454568	0.0219367	0.149888	0.123836
chr11	72973297	72973397	4981193	0	-	0.44	(0.408,0.44]	chr11	470707	510	INTRON	INTRON	FCHSD2	ENSG00000137478.15	ENST00000409418.9:ENST00000311172.11:ENST00000409314.5:ENST00000458644.6:ENST00000409853.5	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	4.00385	4.054895	4.10594	0.0454568	0.0219367	0.149888	0.123836
chr12	42334688	42334787	5118304	0	+	0.414141	(0.408,0.44]	chr12	482914	16	INTRON	INTRON	PPHLN1	ENSG00000134283.18	ENST00000549190.5:ENST00000337898.10:ENST00000395580.7:ENST00000610488.4:ENST00000619544.4:ENST00000613154.4:ENST00000549774.5:ENST00000551723.5:ENST00000552429.5:ENST00000395568.6:ENST00000256678.12:ENST00000358314.12:ENST00000449194.6:ENST00000552761.5:ENST00000551406.5:ENST00000317560.13:ENST00000432191.6:ENST00000552202.5:ENST00000550535.5:ENST00000546750.5:ENST00000547847.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	22	2	4.00385	4.054895	4.10594	0.0454568	0.0219367	0.149888	0.123836
chr13	112751254	112751354	5546864	0	+	0.42	(0.408,0.44]	chr13	529925	337	INTRON	INTRON	ATP11A	ENSG00000068650.19	ENST00000375645.8:ENST00000375630.6:ENST00000487903.5:ENST00000466946.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	22	2	4.00385	4.054895	4.10594	0.0454568	0.0219367	0.149888	0.123836
chr15	64393140	64393240	6043444	0	+	0.42	(0.408,0.44]	chr15	575597	4	SS3_PROX	SS3_PROX:INTRON	TRIP4	ENSG00000103671.10	ENST00000559833.5:ENST00000559565.5:ENST00000261884.8:ENST00000557834.5:ENST00000558820.5:ENST00000560567.5:ENST00000560920.6:ENST00000558442.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	22	2	4.00385	4.054895	4.10594	0.0454568	0.0219367	0.149888	0.123836
chr15	72496690	72496790	6059384	0	+	0.43	(0.408,0.44]	chr15	576854	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	ARIH1	ENSG00000166233.15	ENST00000379887.9:ENST00000570085.5:ENST00000564062.1:ENST00000567762.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	22	2	4.00385	4.054895	4.10594	0.0454568	0.0219367	0.149888	0.123836
chr15	74865733	74865832	6222670	0	-	0.424242	(0.408,0.44]	chr15	594229	107	INTRON	INTRON	SCAMP2	ENSG00000140497.16	ENST00000268099.13:ENST00000563663.5:ENST00000563829.5:ENST00000569904.5:ENST00000565345.5:ENST00000562363.5:ENST00000564529.1:ENST00000566557.5:ENST00000569124.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	22	2	4.00385	4.054895	4.10594	0.0454568	0.0219367	0.149888	0.123836
chr15	75377563	75377662	6223308	0	-	0.434343	(0.408,0.44]	chr15	594406	13	INTRON	INTRON	SIN3A	ENSG00000169375.16	ENST00000394947.8:ENST00000360439.8:ENST00000394949.8:ENST00000570124.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	22	2	4.00385	4.054895	4.10594	0.0454568	0.0219367	0.149888	0.123836
chr16	85008295	85008395	6534140	0	-	0.44	(0.408,0.44]	chr16	633155	34	INTRON	INTRON	ZDHHC7	ENSG00000153786.13	ENST00000313732.9:ENST00000344861.9:ENST00000564466.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	22	2	4.00385	4.054895	4.10594	0.0454568	0.0219367	0.149888	0.123836
chr17	34984746	34984845	6599090	0	+	0.434343	(0.408,0.44]	chr17	642112	8	INTRON	INTRON	LIG3	ENSG00000005156.12	ENST00000378526.9:ENST00000585941.5:ENST00000262327.9:ENST00000592690.1:ENST00000585740.5:ENST00000590181.5:ENST00000586407.1:ENST00000588109.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	22	2	4.00385	4.054895	4.10594	0.0454568	0.0219367	0.149888	0.123836
chr17	57840327	57840425	6799580	0	-	0.438776	(0.408,0.44]	chr17	671350	4	SS3_PROX	SS3_PROX:INTRON	MRPS23	ENSG00000181610.13	ENST00000313608.13	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	4.00385	4.054895	4.10594	0.0454568	0.0219367	0.149888	0.123836
chr18	761117	761217	6940190	0	-	0.41	(0.408,0.44]	chr18	686511	39	INTRON	INTRON	YES1	ENSG00000176105.14	ENST00000584307.5:ENST00000314574.5:ENST00000577961.5:ENST00000577611.1:ENST00000581960.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	22	2	4.00385	4.054895	4.10594	0.0454568	0.0219367	0.149888	0.123836
chr19	11657762	11657862	7018428	0	+	0.44	(0.408,0.44]	chr19	697745	50	INTRON	INTRON	ENSG00000197332	ENSG00000197332.9	ENST00000666937.1:ENST00000344893.4	lncRNA	lncRNA	lncRNA	lncRNA	0	22	2	4.00385	4.054895	4.10594	0.0454568	0.0219367	0.149888	0.123836
chr2	238437602	238437701	1052674	0	+	0.424242	(0.408,0.44]	chr2	111993	12	INTRON	INTRON	ASB1	ENSG00000065802.12	ENST00000463352.5:ENST00000264607.9:ENST00000409297.1:ENST00000438264.5:ENST00000491653.1:ENST00000468122.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	22	2	4.00385	4.054895	4.10594	0.0454568	0.0219367	0.149888	0.123836
chr3	40451006	40451105	1663198	0	-	0.424242	(0.408,0.44]	chr3	170439	38	INTRON	INTRON	ENTPD3-AS1	ENSG00000223797.7	ENST00000439293.5:ENST00000669707.1:ENST00000425156.5:ENST00000668358.1:ENST00000452768.5:ENST00000420850.2:ENST00000689117.1	lncRNA	lncRNA	lncRNA	lncRNA	0	22	2	4.00385	4.054895	4.10594	0.0454568	0.0219367	0.149888	0.123836
chr3	129115502	129115602	1814684	0	-	0.42	(0.408,0.44]	chr3	182380	200	INTRON	INTRON	RAB43:ISY1-RAB43	ENSG00000172780.17:ENSG00000261796.1	ENST00000393305.5:ENST00000393307.5:ENST00000393308.5:ENST00000393304.5:ENST00000315150.10:ENST00000418265.1:ENST00000476465.5:ENST00000615093.1:ENST00000457077.1	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	4.00385	4.054895	4.10594	0.0454568	0.0219367	0.149888	0.123836
chr3	193613524	193613624	1592058	0	+	0.42	(0.408,0.44]	chr3	164727	96	INTRON	INTRON	OPA1	ENSG00000198836.11	ENST00000361828.7:ENST00000361715.6:ENST00000361150.6:ENST00000361908.8:ENST00000361510.8:ENST00000642445.1:ENST00000646277.1:ENST00000644595.1:ENST00000643737.1:ENST00000644841.1:ENST00000392436.7:ENST00000646085.1:ENST00000643329.1:ENST00000646793.1:ENST00000392437.6:ENST00000419435.5:ENST00000645553.1:ENST00000642593.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	22	2	4.00385	4.054895	4.10594	0.0454568	0.0219367	0.149888	0.123836
chr5	34940101	34940200	2337469	0	+	0.434343	(0.408,0.44]	chr5	225757	7	INTRON	INTRON	DNAJC21	ENSG00000168724.17	ENST00000648817.1:ENST00000382021.2:ENST00000642851.1:ENST00000642675.1:ENST00000644357.1:ENST00000642285.1:ENST00000646714.1:ENST00000514237.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	22	2	4.00385	4.054895	4.10594	0.0454568	0.0219367	0.149888	0.123836
chr7	66771133	66771216	3325782	0	+	0.433735	(0.408,0.44]	chr7	309250	3	INTRON	INTRON	RABGEF1	ENSG00000154710.18	ENST00000607882.5:ENST00000284957.9:ENST00000450873.6:ENST00000442563.5:ENST00000439720.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	22	2	4.00385	4.054895	4.10594	0.0454568	0.0219367	0.149888	0.123836
chr7	102669304	102669404	3589216	0	-	0.43	(0.408,0.44]	chr7	335102	3	SS3_PROX	SS3_PROX:INTRON	ENSG00000267645:POLR2J2	ENSG00000267645.5:ENSG00000228049.7	ENST00000476151.5:ENST00000358438.6:ENST00000333432.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	22	2	4.00385	4.054895	4.10594	0.0454568	0.0219367	0.149888	0.123836
chr7	130051054	130051120	3638330	0	-	0.439394	(0.408,0.44]	chr7	338335	2	SS5_PROX	SS5_PROX:INTRON	ZC3HC1	ENSG00000091732.17	ENST00000311873.9:ENST00000358303.9:ENST00000360708.9:ENST00000467642.5:ENST00000648450.1:ENST00000481503.5:ENST00000471022.5:ENST00000483827.1:ENST00000480193.5:ENST00000470651.1:ENST00000484432.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	22	2	4.00385	4.054895	4.10594	0.0454568	0.0219367	0.149888	0.123836
chr8	55980674	55980774	3755357	0	+	0.44	(0.408,0.44]	chr8	349311	105	INTRON	INTRON	LYN	ENSG00000254087.8	ENST00000519728.6:ENST00000520220.6:ENST00000420292.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	22	2	4.00385	4.054895	4.10594	0.0454568	0.0219367	0.149888	0.123836
chr8	102326245	102326345	4011878	0	-	0.44	(0.408,0.44]	chr8	367178	3	SS5_PROX	SS5_PROX:INTRON	UBR5	ENSG00000104517.13	ENST00000520539.6:ENST00000220959.8:ENST00000521922.5	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	4.00385	4.054895	4.10594	0.0454568	0.0219367	0.149888	0.123836
chr9	19100537	19100636	4236580	0	-	0.414141	(0.408,0.44]	chr9	389435	34	INTRON	INTRON	HAUS6	ENSG00000147874.11	ENST00000380502.8	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	4.00385	4.054895	4.10594	0.0454568	0.0219367	0.149888	0.123836
chr9	124622207	124622307	4347724	0	-	0.43	(0.408,0.44]	chr9	399255	265	INTRON	INTRON	NR6A1	ENSG00000148200.17	ENST00000487099.7:ENST00000373584.7:ENST00000416460.6:ENST00000344523.8	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	4.00385	4.054895	4.10594	0.0454568	0.0219367	0.149888	0.123836
chrX	24712056	24712156	7631867	0	+	0.42	(0.408,0.44]	chrX	781611	72	INTRON	INTRON	POLA1	ENSG00000101868.13	ENST00000678847.1:ENST00000672178.1:ENST00000379068.8:ENST00000677890.1:ENST00000379059.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	22	2	4.00385	4.054895	4.10594	0.0454568	0.0219367	0.149888	0.123836
chrX	104125819	104125919	7856867	0	-	0.43	(0.408,0.44]	chrX	801111	202	INTRON	INTRON	SLC25A53	ENSG00000269743.3	ENST00000594199.3	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	4.00385	4.054895	4.10594	0.0454568	0.0219367	0.149888	0.123836
chr2	222880939	222881039	1021410	0	+	0.34	(0.32,0.35]	chr2	109252	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	ACSL3	ENSG00000123983.15	ENST00000392066.7:ENST00000407441.5:ENST00000680251.1:ENST00000679541.1:ENST00000681906.1:ENST00000679545.1:ENST00000679932.1:ENST00000680100.1:ENST00000680475.1:ENST00000680525.1:ENST00000680420.1:ENST00000681326.1:ENST00000681292.1:ENST00000681017.1:ENST00000680382.1:ENST00000535678.2:ENST00000680395.1:ENST00000680736.1:ENST00000679546.1:ENST00000680147.1:ENST00000357430.8:ENST00000681009.1:ENST00000679514.1:ENST00000681697.1:ENST00000680921.1:ENST00000681383.1:ENST00000413316.1:ENST00000679558.1:ENST00000680684.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	52	2	3.41554	4.05467	4.6938	0.0137794	0.00153152	0.0949306	0.0361484
chr1	109329092	109329192	520316	0	-	0.51	(0.476,0.515]	chr1	61131	11	INTRON	INTRON	SORT1	ENSG00000134243.12	ENST00000538502.5:ENST00000256637.8:ENST00000466471.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	46	2	3.07422	4.05444	5.03466	0.00506023	0.00252065	0.0646039	0.0446195
chr11	76510990	76511090	4836166	0	+	0.48	(0.476,0.515]	chr11	451080	139	INTRON	INTRON	EMSY	ENSG00000158636.17	ENST00000695367.1:ENST00000334736.7:ENST00000524490.5:ENST00000533972.5:ENST00000525038.5:ENST00000524767.5:ENST00000525919.5:ENST00000533248.5:ENST00000529032.5	protein_coding	protein_coding	protein_coding	protein_coding	1	46	2	3.07422	4.05444	5.03466	0.00506023	0.00252065	0.0646039	0.0446195
chr2	180990145	180990245	936067	0	+	0.49	(0.476,0.515]	chr2	102627	2	INTRON	INTRON	UBE2E3	ENSG00000170035.16	ENST00000602303.5:ENST00000602959.5:ENST00000602479.5:ENST00000392415.6:ENST00000602291.5:ENST00000410062.9:ENST00000602499.5:ENST00000602710.5:ENST00000602762.5:ENST00000602888.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	46	2	3.07422	4.05444	5.03466	0.00506023	0.00252065	0.0646039	0.0446195
chr9	4853640	4853739	4095486	0	+	0.484848	(0.476,0.515]	chr9	373212	37	INTRON	INTRON	RCL1	ENSG00000120158.12	ENST00000381750.9:ENST00000442869.5:ENST00000381730.5:ENST00000381728.5:ENST00000448872.6	protein_coding	protein_coding	protein_coding	protein_coding	1	46	2	3.07422	4.05444	5.03466	0.00506023	0.00252065	0.0646039	0.0446195
chr3	184364535	184364621	1582708	0	+	0.325581	(0.32,0.35]	chr3	163753	2	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	POLR2H	ENSG00000163882.10	ENST00000456318.6:ENST00000438240.5:ENST00000455712.5:ENST00000430783.5:ENST00000443489.5:ENST00000452961.5:ENST00000429568.1:ENST00000488213.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	68	2	2.82385	4.054175000000001	5.2845	0.00240071	0.00217392	0.0440612	0.043502
chr12	762995	763095	5056281	0	+	0.48	(0.476,0.515]	chr12	477423	83	INTRON	INTRON	WNK1	ENSG00000060237.19	ENST00000315939.11:ENST00000340908.9:ENST00000535572.5:ENST00000537687.5:ENST00000530271.6:ENST00000447667.2	protein_coding	protein_coding	protein_coding	protein_coding	1	48	2	3.49411	4.054065	4.61402	0.00947755	9.23453e-4	0.0817766	0.0278392
chr5	112992348	112992422	2453539	0	+	0.324324	(0.32,0.35]	chr5	235084	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DCP2	ENSG00000172795.17	ENST00000515408.5:ENST00000513585.6:ENST00000502635.2:ENST00000389063.3:ENST00000674880.1:ENST00000512751.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	59	2	2.23182	4.05405	5.87628	0.068598	5.28936e-5	0.184298	0.00592337
chr20	35387086	35387185	7334956	0	-	0.50505	(0.476,0.515]	chr20	747184	3	INTRON	INTRON	UQCC1	ENSG00000101019.22	ENST00000374380.6:ENST00000374394.7:ENST00000374384.6:ENST00000359226.6:ENST00000349714.9:ENST00000457259.5:ENST00000374385.10:ENST00000453855.5:ENST00000397556.7:ENST00000424405.5:ENST00000443429.5:ENST00000438533.5:ENST00000397554.5:ENST00000491125.5:ENST00000491040.5:ENST00000397553.6:ENST00000495752.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	74	2	2.5238	4.054025	5.58425	0.00218334	2.97744e-4	0.0435144	0.0160246
chr1	61244374	61244474	129017	0	+	0.5	(0.476,0.515]	chr1	14788	92	INTRON	INTRON	NFIA	ENSG00000162599.17	ENST00000371191.5:ENST00000664495.1:ENST00000476646.5:ENST00000407417.7:ENST00000479364.1:ENST00000371189.8:ENST00000670151.1:ENST00000664149.1:ENST00000662015.1:ENST00000403491.8:ENST00000371187.7:ENST00000485903.6:ENST00000371185.6:ENST00000371184.6:ENST00000663597.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	22	2	3.97201	4.053935	4.13586	0.031846	0.030904	0.143385	0.13151
chr10	45999213	45999313	4430654	0	+	0.5	(0.476,0.515]	chr10	408492	100	INTRON	INTRON	TIMM23	ENSG00000265354.4	ENST00000580018.4	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.97201	4.053935	4.13586	0.031846	0.030904	0.143385	0.13151
chr12	368495	368595	5254882	0	-	0.5	(0.476,0.515]	chr12	500028	20	INTRON	INTRON	KDM5A	ENSG00000073614.13	ENST00000399788.7:ENST00000544760.1:ENST00000535014.5:ENST00000536014.5	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.97201	4.053935	4.13586	0.031846	0.030904	0.143385	0.13151
chr12	6972958	6973056	5070597	0	+	0.510204	(0.476,0.515]	chr12	479217	15	INTRON	INTRON	EMG1	ENSG00000126749.16	ENST00000599672.6:ENST00000611981.1:ENST00000607161.5:ENST00000620255.1:ENST00000261406.7:ENST00000539196.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	22	2	3.97201	4.053935	4.13586	0.031846	0.030904	0.143385	0.13151
chr15	78494664	78494764	6068076	0	+	0.51	(0.476,0.515]	chr15	578018	4	SS5_PROX	SS5_PROX:INTRON	IREB2	ENSG00000136381.13	ENST00000258886.13:ENST00000558570.5:ENST00000559091.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	22	2	3.97201	4.053935	4.13586	0.031846	0.030904	0.143385	0.13151
chr16	8829258	8829357	6284980	0	+	0.484848	(0.476,0.515]	chr16	601855	1	INTRON	INTRON	PMM2	ENSG00000140650.13	ENST00000566983.5:ENST00000683435.1:ENST00000683094.1:ENST00000566604.5:ENST00000268261.9:ENST00000683274.1:ENST00000682393.1:ENST00000566540.5:ENST00000562318.5:ENST00000570076.5:ENST00000569958.5:ENST00000565221.5:ENST00000567697.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	22	2	3.97201	4.053935	4.13586	0.031846	0.030904	0.143385	0.13151
chr16	58521717	58521817	6495231	0	-	0.49	(0.476,0.515]	chr16	628380	4	SS3_PROX	SS3_PROX:INTRON	CNOT1	ENSG00000125107.19	ENST00000317147.10:ENST00000563130.5:ENST00000569240.5:ENST00000567188.5:ENST00000569924.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	22	2	3.97201	4.053935	4.13586	0.031846	0.030904	0.143385	0.13151
chr16	68047709	68047809	6369819	0	+	0.49	(0.476,0.515]	chr16	612083	92	INTRON	INTRON	DUS2	ENSG00000167264.18	ENST00000571081.6:ENST00000570709.6:ENST00000575677.5:ENST00000576994.5:ENST00000566306.5:ENST00000358896.10:ENST00000564975.5:ENST00000568099.6:ENST00000565263.6:ENST00000567100.5:ENST00000432752.5:ENST00000564781.1:ENST00000562246.2:ENST00000561965.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	22	2	3.97201	4.053935	4.13586	0.031846	0.030904	0.143385	0.13151
chr16	69392291	69392390	6508272	0	-	0.515152	(0.476,0.515]	chr16	630142	64	INTRON	INTRON	TERF2	ENSG00000132604.11	ENST00000567841.1	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.97201	4.053935	4.13586	0.031846	0.030904	0.143385	0.13151
chr16	89771277	89771377	6544337	0	-	0.51	(0.476,0.515]	chr16	634492	2	SS5_PROX	SS5_PROX:INTRON	FANCA	ENSG00000187741.16	ENST00000561667.2:ENST00000389301.8:ENST00000568369.6:ENST00000564475.6:ENST00000696275.1:ENST00000696287.1:ENST00000696286.1:ENST00000696274.1:ENST00000567510.2:ENST00000696291.1:ENST00000696276.1:ENST00000567205.2:ENST00000567284.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	22	2	3.97201	4.053935	4.13586	0.031846	0.030904	0.143385	0.13151
chr17	62538035	62538135	6653480	0	+	0.48	(0.476,0.515]	chr17	649352	13	INTRON	INTRON	TLK2	ENSG00000146872.19	ENST00000582809.5:ENST00000684213.1:ENST00000583843.5:ENST00000582195.6:ENST00000682085.1:ENST00000580705.5:ENST00000346027.10:ENST00000326270.13:ENST00000682203.1:ENST00000343388.11:ENST00000683536.1:ENST00000684440.1:ENST00000684772.1:ENST00000682274.1:ENST00000682827.1:ENST00000682075.1:ENST00000683104.1:ENST00000684012.1:ENST00000581041.5:ENST00000684553.1:ENST00000683737.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	22	2	3.97201	4.053935	4.13586	0.031846	0.030904	0.143385	0.13151
chr19	4936942	4937042	7003148	0	+	0.5	(0.476,0.515]	chr19	694737	36	INTRON	INTRON	UHRF1	ENSG00000276043.5	ENST00000612630.4:ENST00000620565.4:ENST00000624301.3:ENST00000613817.4:ENST00000650932.1:ENST00000615884.4:ENST00000622802.4:ENST00000616255.1	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.97201	4.053935	4.13586	0.031846	0.030904	0.143385	0.13151
chr19	21302524	21302624	7158367	0	-	0.48	(0.476,0.515]	chr19	723652	74	INTRON	INTRON	ZNF708	ENSG00000182141.10	ENST00000356929.3:ENST00000598046.5:ENST00000601295.1:ENST00000602023.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	22	2	3.97201	4.053935	4.13586	0.031846	0.030904	0.143385	0.13151
chr2	180992743	180992843	936093	0	+	0.5	(0.476,0.515]	chr2	102627	28	INTRON	INTRON	UBE2E3	ENSG00000170035.16	ENST00000602303.5:ENST00000602959.5:ENST00000602479.5:ENST00000392415.6:ENST00000602291.5:ENST00000410062.9:ENST00000602499.5:ENST00000602710.5:ENST00000602762.5:ENST00000602888.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	22	2	3.97201	4.053935	4.13586	0.031846	0.030904	0.143385	0.13151
chr21	29427381	29427481	7393653	0	+	0.51	(0.476,0.515]	chr21	753248	538	INTRON	INTRON	BACH1	ENSG00000156273.16	ENST00000422809.5:ENST00000468059.1	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.97201	4.053935	4.13586	0.031846	0.030904	0.143385	0.13151
chr22	50429181	50429280	7545060	0	+	0.515152	(0.476,0.515]	chr22	771081	52	INTRON	INTRON	PPP6R2	ENSG00000100239.16	ENST00000359139.7:ENST00000395741.7:ENST00000612753.5:ENST00000395744.7:ENST00000216061.9:ENST00000401672.7:ENST00000427222.2	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.97201	4.053935	4.13586	0.031846	0.030904	0.143385	0.13151
chr3	158490077	158490177	1542092	0	+	0.49	(0.476,0.515]	chr3	160329	205	INTRON	INTRON	RSRC1	ENSG00000174891.14	ENST00000480820.5:ENST00000295930.7:ENST00000683733.1:ENST00000682221.1:ENST00000482822.3:ENST00000476899.6:ENST00000464171.5:ENST00000611884.5:ENST00000682164.1:ENST00000684604.1:ENST00000683899.1:ENST00000682500.1:ENST00000312179.10:ENST00000475278.6:ENST00000480119.5:ENST00000683137.1:ENST00000684353.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	22	2	3.97201	4.053935	4.13586	0.031846	0.030904	0.143385	0.13151
chr4	23131443	23131543	1929455	0	+	0.48	(0.476,0.515]	chr4	194009	38	INTRON	INTRON	ENSG00000248837	ENSG00000248837.7	ENST00000661585.1:ENST00000663348.1	lncRNA	lncRNA	lncRNA	lncRNA	0	22	2	3.97201	4.053935	4.13586	0.031846	0.030904	0.143385	0.13151
chr5	80631201	80631298	2661663	0	-	0.505155	(0.476,0.515]	chr5	252238	1	EXON_LNCRNA	EXON_LNCRNA:INTRON	DHFR:ENSG00000249655	ENSG00000228716.7:ENSG00000249655.1	ENST00000439211.7:ENST00000505337.5:ENST00000511032.5:ENST00000504396.1:ENST00000513048.5:ENST00000508282.1:ENST00000514201.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA:processed_transcript	0	22	2	3.97201	4.053935	4.13586	0.031846	0.030904	0.143385	0.13151
chr5	176924847	176924947	2776106	0	-	0.5	(0.476,0.515]	chr5	261526	52	INTRON	INTRON	UIMC1	ENSG00000087206.17	ENST00000377227.8:ENST00000511320.6:ENST00000506128.5:ENST00000512031.5:ENST00000510698.2:ENST00000503273.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	22	2	3.97201	4.053935	4.13586	0.031846	0.030904	0.143385	0.13151
chr7	74720735	74720834	3335892	0	+	0.494949	(0.476,0.515]	chr7	310410	14	INTRON	INTRON	GTF2I	ENSG00000263001.8	ENST00000650807.1:ENST00000690345.1:ENST00000573035.6:ENST00000614986.4:ENST00000620879.4:ENST00000621734.4:ENST00000484840.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	22	2	3.97201	4.053935	4.13586	0.031846	0.030904	0.143385	0.13151
chr7	77920765	77920865	3345185	0	+	0.5	(0.476,0.515]	chr7	311543	3	SS5_PROX	SS5_PROX:INTRON	PHTF2	ENSG00000006576.17	ENST00000422959.7:ENST00000416283.6:ENST00000307305.12:ENST00000424760.5:ENST00000415251.6:ENST00000275575.11:ENST00000450574.5:ENST00000248550.7:ENST00000454592.5:ENST00000479515.1:ENST00000468351.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	22	2	3.97201	4.053935	4.13586	0.031846	0.030904	0.143385	0.13151
chr7	152172636	152172736	3678602	0	-	0.4	(0.378,0.408]	chr7	341450	9	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000360104.8:ENST00000262189.11:ENST00000680877.1:ENST00000679560.1:ENST00000683120.1:ENST00000679393.1:ENST00000683200.1:ENST00000684261.1:ENST00000682283.1:ENST00000473186.5:ENST00000679882.1:ENST00000683397.1:ENST00000684307.1:ENST00000683625.1:ENST00000684398.1:ENST00000683670.1:ENST00000680969.1:ENST00000681033.1:ENST00000682176.1:ENST00000683159.1:ENST00000558665.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	170	2	3.3402	4.053915	4.76763	5.46679e-5	6.94535e-7	0.00651589	4.60891e-4
chr12	68632055	68632155	5161418	0	+	0.2	[0,0.28]	chr12	488585	68	INTRON	INTRON	RAP1B	ENSG00000127314.18	ENST00000460800.5:ENST00000393436.9:ENST00000250559.14:ENST00000425247.6:ENST00000501412.2:ENST00000450214.6:ENST00000463493.5:ENST00000537460.5:ENST00000341355.9:ENST00000538283.5:ENST00000541167.5:ENST00000422358.6:ENST00000489473.6:ENST00000545270.5:ENST00000538980.5:ENST00000543393.5:ENST00000542018.5:ENST00000540209.5:ENST00000378985.7:ENST00000453560.6:ENST00000534899.5:ENST00000542145.5:ENST00000539091.5:ENST00000535492.5:ENST00000540781.5:ENST00000485252.6:ENST00000538877.5:ENST00000541386.5:ENST00000543697.5:ENST00000545720.6:ENST00000541216.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	78	2	2.75887	4.053885	5.3489	0.00514751	0.00360252	0.062965	0.0552588
chr4	126626687	126626787	2236976	0	-	0.27	[0,0.28]	chr4	219023	1612	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	2	78	2	2.75887	4.053885	5.3489	0.00514751	0.00360252	0.062965	0.0552588
chr7	27653722	27653821	3510853	0	-	0.343434	(0.32,0.35]	chr7	327353	37	INTRON	INTRON	HIBADH	ENSG00000106049.9	ENST00000265395.7:ENST00000428288.2:ENST00000496814.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	52	2	2.64129	4.053855	5.46642	0.0222819	0.00127669	0.124303	0.0326395
chr4	94486438	94486537	1998728	0	+	0.414141	(0.408,0.44]	chr4	199549	294	INTRON	INTRON	PDLIM5	ENSG00000163110.15	ENST00000437932.5:ENST00000615540.4:ENST00000318007.9:ENST00000380180.7:ENST00000514830.5:ENST00000509333.5:ENST00000503974.5:ENST00000317968.9:ENST00000627587.2:ENST00000542407.5:ENST00000514743.5:ENST00000508216.5:ENST00000511767.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	46	2	3.08738	4.05383	5.02028	0.00478231	0.00303216	0.0636201	0.0493883
chr1	226147615	226147713	646660	0	-	0.326531	(0.32,0.35]	chr1	76630	4	INTRON	INTRON	ACBD3	ENSG00000182827.9	ENST00000366812.6	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	3.94529	4.053575	4.16186	0.0693433	0.026079	0.184298	0.133676
chr11	12873806	12873905	4741580	0	+	0.333333	(0.32,0.35]	chr11	439091	84	INTRON	INTRON	TEAD1	ENSG00000187079.20	ENST00000527636.7:ENST00000334310.10:ENST00000527575.6	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	3.94529	4.053575	4.16186	0.0693433	0.026079	0.184298	0.133676
chr11	117253340	117253440	4869644	0	+	0.35	(0.32,0.35]	chr11	454512	60	INTRON	INTRON	RNF214	ENSG00000167257.11	ENST00000300650.9:ENST00000531452.5:ENST00000531287.5:ENST00000530849.1	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	3.94529	4.053575	4.16186	0.0693433	0.026079	0.184298	0.133676
chr12	70273043	70273143	5166728	0	+	0.34	(0.32,0.35]	chr12	489374	284	INTRON	INTRON	CNOT2	ENSG00000111596.14	ENST00000547780.5:ENST00000418359.7:ENST00000552319.5:ENST00000550160.5:ENST00000551661.5:ENST00000551132.5:ENST00000553078.5:ENST00000548021.5:ENST00000550641.6:ENST00000229195.8:ENST00000552915.5:ENST00000549443.5:ENST00000548741.5:ENST00000552483.5:ENST00000552422.5:ENST00000551179.1:ENST00000547321.5:ENST00000553020.5:ENST00000548159.5:ENST00000549750.5:ENST00000551043.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	23	2	3.94529	4.053575	4.16186	0.0693433	0.026079	0.184298	0.133676
chr12	102317032	102317132	5206843	0	+	0.33	(0.32,0.35]	chr12	492881	1196	EXON_LNCRNA	EXON_LNCRNA:INTRON	HELLPAR:LINC02456	ENSG00000281344.1:ENSG00000283052.1	ENST00000626826.1:ENST00000635615.1	lncRNA	lncRNA	lncRNA	lncRNA	0	23	2	3.94529	4.053575	4.16186	0.0693433	0.026079	0.184298	0.133676
chr12	120245415	120245515	5433697	0	-	0.35	(0.32,0.35]	chr12	519462	179	INTRON	INTRON	PXN	ENSG00000089159.17	ENST00000267257.11:ENST00000228307.11:ENST00000424649.6:ENST00000637617.2:ENST00000458477.6:ENST00000323871.9:ENST00000547983.5:ENST00000551327.5:ENST00000440827.3:ENST00000547746.1:ENST00000550205.1:ENST00000547772.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	23	2	3.94529	4.053575	4.16186	0.0693433	0.026079	0.184298	0.133676
chr13	79542460	79542560	5516576	0	+	0.33	(0.32,0.35]	chr13	527533	23	INTRON	INTRON	NDFIP2	ENSG00000102471.15	ENST00000612570.4:ENST00000218652.12:ENST00000650134.1:ENST00000487865.5:ENST00000465762.5:ENST00000620924.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	23	2	3.94529	4.053575	4.16186	0.0693433	0.026079	0.184298	0.133676
chr17	61841032	61841132	6808709	0	-	0.34	(0.32,0.35]	chr17	672605	319	INTRON	INTRON	BRIP1	ENSG00000136492.10	ENST00000259008.7:ENST00000682755.1:ENST00000682453.1:ENST00000683039.1:ENST00000682989.1:ENST00000682589.1:ENST00000683235.1:ENST00000682477.1:ENST00000684584.1:ENST00000577598.5:ENST00000682066.1:ENST00000584322.2:ENST00000683381.1:ENST00000579028.2:ENST00000682611.1:ENST00000683692.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	23	2	3.94529	4.053575	4.16186	0.0693433	0.026079	0.184298	0.133676
chr18	36862481	36862581	6893169	0	+	0.33	(0.32,0.35]	chr18	683214	178	INTRON	INTRON	KIAA1328	ENSG00000150477.15	ENST00000592611.5:ENST00000280020.10:ENST00000592521.5:ENST00000590617.5:ENST00000587139.5:ENST00000591619.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	23	2	3.94529	4.053575	4.16186	0.0693433	0.026079	0.184298	0.133676
chr19	34378533	34378633	7052623	0	+	0.33	(0.32,0.35]	chr19	703385	2	SS3_PROX	SS3_PROX:INTRON	GPI	ENSG00000105220.17	ENST00000415930.8:ENST00000588991.7:ENST00000356487.11:ENST00000589399.6:ENST00000647446.1:ENST00000586425.2:ENST00000643067.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	23	2	3.94529	4.053575	4.16186	0.0693433	0.026079	0.184298	0.133676
chr19	43839432	43839529	7075665	0	+	0.340206	(0.32,0.35]	chr19	707312	15	INTRON	INTRON	ZNF283	ENSG00000167637.18	ENST00000618787.5:ENST00000588797.6:ENST00000650832.1:ENST00000586976.5:ENST00000590950.5:ENST00000593268.5:ENST00000324461.9	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	23	2	3.94529	4.053575	4.16186	0.0693433	0.026079	0.184298	0.133676
chr3	100266993	100267092	1465626	0	+	0.323232	(0.32,0.35]	chr3	153589	51	INTRON	INTRON	TBC1D23	ENSG00000036054.13	ENST00000394144.9:ENST00000485687.5:ENST00000344949.9:ENST00000486274.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	23	2	3.94529	4.053575	4.16186	0.0693433	0.026079	0.184298	0.133676
chr4	182894288	182894388	2302865	0	-	0.35	(0.32,0.35]	chr4	222643	4	SS5_PROX	SS5_PROX:INTRON	DCTD	ENSG00000129187.15	ENST00000500813.6:ENST00000438320.7:ENST00000357067.7:ENST00000507543.5:ENST00000507631.5:ENST00000510370.5:ENST00000503182.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	23	2	3.94529	4.053575	4.16186	0.0693433	0.026079	0.184298	0.133676
chr5	44811734	44811814	2352024	0	+	0.35	(0.32,0.35]	chr5	226933	2	SS3_PROX	SS3_PROX:INTRON	MRPS30	ENSG00000112996.11	ENST00000507110.6:ENST00000515647.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	23	2	3.94529	4.053575	4.16186	0.0693433	0.026079	0.184298	0.133676
chr6	88849155	88849254	3157986	0	-	0.343434	(0.32,0.35]	chr6	294203	43	INTRON	INTRON	RNGTT	ENSG00000111880.16	ENST00000369485.9:ENST00000369475.7:ENST00000627296.1:ENST00000538899.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	23	2	3.94529	4.053575	4.16186	0.0693433	0.026079	0.184298	0.133676
chr7	66746190	66746290	3325530	0	+	0.35	(0.32,0.35]	chr7	309233	50	INTRON	INTRON	RABGEF1	ENSG00000154710.18	ENST00000607882.5:ENST00000284957.9:ENST00000450873.6:ENST00000442563.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	23	2	3.94529	4.053575	4.16186	0.0693433	0.026079	0.184298	0.133676
chr7	96145356	96145456	3574470	0	-	0.33	(0.32,0.35]	chr7	332987	131	INTRON	INTRON	SLC25A13	ENSG00000004864.14	ENST00000265631.10:ENST00000416240.6	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	3.94529	4.053575	4.16186	0.0693433	0.026079	0.184298	0.133676
chr7	133420806	133420906	3419846	0	+	0.35	(0.32,0.35]	chr7	319348	240	INTRON	INTRON	EXOC4	ENSG00000131558.15	ENST00000486013.5:ENST00000393161.6:ENST00000253861.5:ENST00000462055.5:ENST00000486409.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	23	2	3.94529	4.053575	4.16186	0.0693433	0.026079	0.184298	0.133676
chr7	140085637	140085736	3659269	0	-	0.333333	(0.32,0.35]	chr7	339635	10	UTR3	UTR3:EXON_MRNA	KDM7A	ENSG00000006459.11	ENST00000397560.7:ENST00000472616.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	23	2	3.94529	4.053575	4.16186	0.0693433	0.026079	0.184298	0.133676
chr8	73867968	73868068	3972151	0	-	0.33	(0.32,0.35]	chr8	364247	371	INTRON	INTRON	ENSG00000258677:UBE2W	ENSG00000258677.2:ENSG00000104343.21	ENST00000358757.5:ENST00000602593.6:ENST00000517608.5:ENST00000650817.1:ENST00000422906.6:ENST00000419880.7:ENST00000651945.1:ENST00000519277.5:ENST00000519255.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	23	2	3.94529	4.053575	4.16186	0.0693433	0.026079	0.184298	0.133676
chr8	140854448	140854548	4078595	0	-	0.35	(0.32,0.35]	chr8	370519	74	INTRON	INTRON	PTK2	ENSG00000169398.20	ENST00000696786.1:ENST00000522684.5:ENST00000395218.3:ENST00000519654.5:ENST00000521059.5:ENST00000517887.5:ENST00000519993.5:ENST00000340930.7:ENST00000519419.5:ENST00000524357.5:ENST00000521791.5:ENST00000523067.5:ENST00000520828.5:ENST00000520475.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	23	2	3.94529	4.053575	4.16186	0.0693433	0.026079	0.184298	0.133676
chrX	77967867	77967966	7685609	0	+	0.343434	(0.32,0.35]	chrX	786851	17	INTRON	INTRON	ATP7A:PGK1	ENSG00000165240.22:ENSG00000102144.15	ENST00000693051.1:ENST00000341514.11:ENST00000688746.1:ENST00000688338.1:ENST00000685264.1:ENST00000686515.1:ENST00000687086.1:ENST00000689530.1:ENST00000686999.1:ENST00000644362.1:ENST00000343533.10:ENST00000686543.1:ENST00000686033.1:ENST00000692908.1:ENST00000686688.1:ENST00000686480.1:ENST00000689649.1:ENST00000686416.1:ENST00000682742.2:ENST00000685434.1:ENST00000693387.1:ENST00000688249.1:ENST00000689891.1:ENST00000691152.1:ENST00000688889.1:ENST00000687984.1:ENST00000685208.1:ENST00000687599.1:ENST00000685885.1:ENST00000687082.1:ENST00000693167.1:ENST00000692729.1:ENST00000645454.1:ENST00000686896.1:ENST00000689731.1:ENST00000684798.1:ENST00000686560.1:ENST00000686464.1:ENST00000686050.1:ENST00000686133.1:ENST00000645094.1:ENST00000689541.1:ENST00000642651.1:ENST00000693398.1:ENST00000688165.1:ENST00000692110.1:ENST00000687325.1:ENST00000689767.1:ENST00000687628.1:ENST00000691456.1:ENST00000687416.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	23	2	3.94529	4.053575	4.16186	0.0693433	0.026079	0.184298	0.133676
chr16	81460314	81460413	6405152	0	+	0.59596	(0.57,1]	chr16	615026	144	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	3.13254	4.05356	4.97458	0.00310655	2.67728e-4	0.0512344	0.0149989
chr1	28977135	28977235	59582	0	+	0.34	(0.32,0.35]	chr1	7621	620	INTRON	INTRON	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000647918.1:ENST00000646800.1:ENST00000644342.1:ENST00000646189.1:ENST00000482464.6:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000646260.1:ENST00000373798.5:ENST00000644600.1:ENST00000649674.1:ENST00000643173.1:ENST00000343067.9:ENST00000644780.1:ENST00000650265.1:ENST00000648181.1:ENST00000643604.1:ENST00000648891.1:ENST00000373797.2:ENST00000349460.9:ENST00000645184.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	23	2	4.04364	4.053315	4.06299	0.0559439	0.034181	0.165463	0.146815
chr1	61280281	61280381	129380	0	+	0.35	(0.32,0.35]	chr1	14801	23	INTRON	INTRON	NFIA	ENSG00000162599.17	ENST00000371191.5:ENST00000664495.1:ENST00000476646.5:ENST00000407417.7:ENST00000479364.1:ENST00000371189.8:ENST00000670151.1:ENST00000664149.1:ENST00000662015.1:ENST00000403491.8:ENST00000371187.7:ENST00000485903.6:ENST00000371185.6:ENST00000371184.6:ENST00000663597.1:ENST00000657234.1:ENST00000655770.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	23	2	4.04364	4.053315	4.06299	0.0559439	0.034181	0.165463	0.146815
chr1	157021327	157021427	569331	0	-	0.33	(0.32,0.35]	chr1	68657	348	INTRON	INTRON	ARHGEF11	ENSG00000132694.19	ENST00000368194.8:ENST00000361409.2	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	4.04364	4.053315	4.06299	0.0559439	0.034181	0.165463	0.146815
chr1	213084600	213084700	311037	0	+	0.33	(0.32,0.35]	chr1	35919	64	INTRON	INTRON	RPS6KC1	ENSG00000136643.12	ENST00000615329.4:ENST00000543354.5:ENST00000614059.4:ENST00000543470.5:ENST00000366960.8:ENST00000366959.4:ENST00000490299.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	23	2	4.04364	4.053315	4.06299	0.0559439	0.034181	0.165463	0.146815
chr10	11923000	11923099	4556563	0	-	0.333333	(0.32,0.35]	chr10	420512	13	INTRON	INTRON	UPF2	ENSG00000151461.20	ENST00000357604.10:ENST00000356352.6:ENST00000397053.6	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	4.04364	4.053315	4.06299	0.0559439	0.034181	0.165463	0.146815
chr10	31835157	31835256	4589377	0	-	0.333333	(0.32,0.35]	chr10	423129	30	INTRON	INTRON	ARHGAP12	ENSG00000165322.18	ENST00000344936.7:ENST00000375245.8:ENST00000396144.8:ENST00000375250.9:ENST00000311380.8:ENST00000497103.1:ENST00000454919.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	23	2	4.04364	4.053315	4.06299	0.0559439	0.034181	0.165463	0.146815
chr10	32317325	32317425	4591346	0	-	0.34	(0.32,0.35]	chr10	423379	110	INTRON	INTRON	EPC1	ENSG00000120616.16	ENST00000375110.6:ENST00000319778.11:ENST00000667706.1:ENST00000263062.8:ENST00000479380.2:ENST00000495790.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	23	2	4.04364	4.053315	4.06299	0.0559439	0.034181	0.165463	0.146815
chr10	79776020	79776120	4657175	0	-	0.35	(0.32,0.35]	chr10	429007	93	INTRON	INTRON	NUTM2B-AS1	ENSG00000225484.7	ENST00000671459.1:ENST00000601369.6:ENST00000662025.1:ENST00000670682.1:ENST00000619625.4:ENST00000658528.1:ENST00000477192.6:ENST00000610681.1:ENST00000665716.1:ENST00000483080.6:ENST00000661316.1:ENST00000488805.5	lncRNA	lncRNA	lncRNA	lncRNA	0	23	2	4.04364	4.053315	4.06299	0.0559439	0.034181	0.165463	0.146815
chr11	110270941	110271040	5041074	0	-	0.343434	(0.32,0.35]	chr11	474728	57	INTRON	INTRON	RDX	ENSG00000137710.17	ENST00000645527.1:ENST00000530749.5:ENST00000528498.5:ENST00000528900.5:ENST00000530301.5:ENST00000647231.1:ENST00000646663.1:ENST00000645495.2:ENST00000544551.5:ENST00000530131.5:ENST00000534683.1:ENST00000532118.5:ENST00000528556.5:ENST00000533991.1:ENST00000533678.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	23	2	4.04364	4.053315	4.06299	0.0559439	0.034181	0.165463	0.146815
chr12	68705068	68705167	5162034	0	+	0.343434	(0.32,0.35]	chr12	488691	19	INTRON	INTRON	NUP107	ENSG00000111581.10	ENST00000378905.6:ENST00000229179.9:ENST00000537598.5:ENST00000535718.5:ENST00000539906.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	23	2	4.04364	4.053315	4.06299	0.0559439	0.034181	0.165463	0.146815
chr12	112061588	112061688	5414941	0	-	0.35	(0.32,0.35]	chr12	517188	2	SS3_PROX	SS3_PROX:INTRON	NAA25	ENSG00000111300.10	ENST00000261745.9:ENST00000552527.5:ENST00000549711.5:ENST00000551858.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	23	2	4.04364	4.053315	4.06299	0.0559439	0.034181	0.165463	0.146815
chr12	116115811	116115911	5423927	0	-	0.33	(0.32,0.35]	chr12	518263	39	INTRON	INTRON	MED13L	ENSG00000123066.9	ENST00000281928.9:ENST00000650226.1:ENST00000548743.2:ENST00000647567.1:ENST00000551197.2	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	4.04364	4.053315	4.06299	0.0559439	0.034181	0.165463	0.146815
chr12	132988866	132988966	5252119	0	+	0.34	(0.32,0.35]	chr12	499627	7	INTRON	INTRON	ZNF26	ENSG00000198393.8	ENST00000537956.1:ENST00000328654.10:ENST00000545101.1:ENST00000540238.5:ENST00000544181.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	23	2	4.04364	4.053315	4.06299	0.0559439	0.034181	0.165463	0.146815
chr14	76448247	76448347	5798487	0	+	0.33	(0.32,0.35]	chr14	549257	81	INTRON	INTRON	ESRRB	ENSG00000119715.15	ENST00000512784.6:ENST00000380887.7:ENST00000505752.6:ENST00000644823.1:ENST00000509242.5:ENST00000556177.1:ENST00000509323.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	23	2	4.04364	4.053315	4.06299	0.0559439	0.034181	0.165463	0.146815
chr15	28631537	28631637	5988336	0	+	0.34	(0.32,0.35]	chr15	569276	17	INTRON	INTRON	HERC2P9	ENSG00000206149.11	ENST00000689985.1:ENST00000688694.1:ENST00000529537.2:ENST00000529624.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	23	2	4.04364	4.053315	4.06299	0.0559439	0.034181	0.165463	0.146815
chr15	74000971	74001071	6061083	0	+	0.34	(0.32,0.35]	chr15	577060	21	INTRON	INTRON	PML	ENSG00000140464.20	ENST00000395135.7:ENST00000268058.8:ENST00000395132.6:ENST00000268059.10:ENST00000354026.10:ENST00000565898.5:ENST00000569477.5:ENST00000569965.5:ENST00000564428.5:ENST00000359928.8:ENST00000436891.7:ENST00000435786.6:ENST00000567543.5:ENST00000563500.5:ENST00000564725.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	23	2	4.04364	4.053315	4.06299	0.0559439	0.034181	0.165463	0.146815
chr15	78542306	78542394	6068486	0	+	0.329545	(0.32,0.35]	chr15	578085	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PSMA4	ENSG00000041357.16	ENST00000560217.5:ENST00000559082.5:ENST00000413382.6:ENST00000559948.5:ENST00000560033.5:ENST00000559146.5:ENST00000044462.12:ENST00000559934.5:ENST00000558639.5:ENST00000558635.1:ENST00000560099.5:ENST00000557929.5:ENST00000558281.5:ENST00000559365.5:ENST00000558341.5:ENST00000559437.5:ENST00000560842.1:ENST00000560737.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	23	2	4.04364	4.053315	4.06299	0.0559439	0.034181	0.165463	0.146815
chr18	2922699	2922794	6944173	0	-	0.347368	(0.32,0.35]	chr18	686736	1	INTRON	INTRON	LPIN2	ENSG00000101577.10	ENST00000261596.8:ENST00000677752.1	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	4.04364	4.053315	4.06299	0.0559439	0.034181	0.165463	0.146815
chr19	21754668	21754768	7159176	0	-	0.35	(0.32,0.35]	chr19	723737	7	INTRON	INTRON	ZNF100	ENSG00000197020.12	ENST00000358296.11:ENST00000598026.1:ENST00000596452.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	23	2	4.04364	4.053315	4.06299	0.0559439	0.034181	0.165463	0.146815
chr2	24870269	24870369	1083570	0	-	0.34	(0.32,0.35]	chr2	115849	275	INTRON	INTRON	ADCY3	ENSG00000138031.15	ENST00000679454.1:ENST00000260600.9:ENST00000405392.6:ENST00000427849.5:ENST00000435135.5:ENST00000433852.1	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	4.04364	4.053315	4.06299	0.0559439	0.034181	0.165463	0.146815
chr2	177478227	177478325	926955	0	+	0.346939	(0.32,0.35]	chr2	101851	11	INTRON	INTRON	AGPS	ENSG00000018510.18	ENST00000679459.1:ENST00000637633.2:ENST00000680770.1:ENST00000680705.1:ENST00000681752.1:ENST00000681565.1:ENST00000680893.1:ENST00000681032.1:ENST00000679421.1:ENST00000680910.1:ENST00000409888.1:ENST00000642466.2:ENST00000264167.11:ENST00000680155.1:ENST00000679478.1:ENST00000681449.1:ENST00000681891.1:ENST00000681028.1:ENST00000680028.1:ENST00000679994.1:ENST00000680390.1:ENST00000681300.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	23	2	4.04364	4.053315	4.06299	0.0559439	0.034181	0.165463	0.146815
chr21	6248214	6248313	7425120	0	-	0.333333	(0.32,0.35]	chr21	757447	117	INTRON	INTRON	ENSG00000275496	ENSG00000275496.4	ENST00000621924.4:ENST00000617746.4:ENST00000624446.1:ENST00000623405.3:ENST00000623575.3:ENST00000623506.1	lncRNA	lncRNA	lncRNA	lncRNA	0	23	2	4.04364	4.053315	4.06299	0.0559439	0.034181	0.165463	0.146815
chr22	24576163	24576263	7488583	0	+	0.33	(0.32,0.35]	chr22	764111	13	INTRON	INTRON	ENSG00000286070:SNRPD3	ENSG00000286070.2:ENSG00000100028.12	ENST00000652248.1:ENST00000402849.5:ENST00000404603.5:ENST00000439775.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	23	2	4.04364	4.053315	4.06299	0.0559439	0.034181	0.165463	0.146815
chr3	129882446	129882545	1817994	0	-	0.323232	(0.32,0.35]	chr3	182656	15	INTRON	INTRON	TMCC1	ENSG00000172765.18	ENST00000393238.8:ENST00000426664.6:ENST00000648771.1:ENST00000505616.5:ENST00000505924.5:ENST00000512902.5:ENST00000508869.5:ENST00000515024.5:ENST00000508729.5:ENST00000509440.5:ENST00000510521.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	23	2	4.04364	4.053315	4.06299	0.0559439	0.034181	0.165463	0.146815
chr3	187137816	187137915	1889883	0	-	0.323232	(0.32,0.35]	chr3	189074	94	INTRON	INTRON	RPL39L	ENSG00000163923.10	ENST00000433055.1:ENST00000296277.9:ENST00000455270.5	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	4.04364	4.053315	4.06299	0.0559439	0.034181	0.165463	0.146815
chr5	37554078	37554178	2342144	0	+	0.33	(0.32,0.35]	chr5	226254	371	INTRON	INTRON	WDR70	ENSG00000082068.9	ENST00000504564.1:ENST00000511906.5:ENST00000265107.9:ENST00000510699.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	23	2	4.04364	4.053315	4.06299	0.0559439	0.034181	0.165463	0.146815
chr5	143287302	143287401	2741361	0	-	0.343434	(0.32,0.35]	chr5	258547	42	INTRON	INTRON	NR3C1	ENSG00000113580.15	ENST00000343796.6:ENST00000394464.7:ENST00000415690.6:ENST00000424646.6:ENST00000504572.5:ENST00000394466.6:ENST00000231509.7:ENST00000652686.1:ENST00000503201.1	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	4.04364	4.053315	4.06299	0.0559439	0.034181	0.165463	0.146815
chr6	42819263	42819362	2867139	0	+	0.343434	(0.32,0.35]	chr6	271300	85	INTRON	INTRON	BICRAL	ENSG00000112624.13	ENST00000614467.4:ENST00000314073.10	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	4.04364	4.053315	4.06299	0.0559439	0.034181	0.165463	0.146815
chr6	44431605	44431705	2873368	0	+	0.34	(0.32,0.35]	chr6	272707	13	INTRON	INTRON	CDC5L	ENSG00000096401.8	ENST00000371477.4	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	4.04364	4.053315	4.06299	0.0559439	0.034181	0.165463	0.146815
chr7	16768816	16768916	3287274	0	+	0.33	(0.32,0.35]	chr7	305325	144	INTRON	INTRON	TSPAN13	ENSG00000106537.8	ENST00000262067.5	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	4.04364	4.053315	4.06299	0.0559439	0.034181	0.165463	0.146815
chr7	24934990	24935090	3505375	0	-	0.33	(0.32,0.35]	chr7	327114	170	INTRON	INTRON	OSBPL3	ENSG00000070882.13	ENST00000313367.7:ENST00000415952.1	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	4.04364	4.053315	4.06299	0.0559439	0.034181	0.165463	0.146815
chrX	113996975	113997075	7868010	0	-	0.34	(0.32,0.35]	chrX	801551	51	INTRON	INTRON	XACT	ENSG00000241743.4	ENST00000468762.3:ENST00000649506.1	lncRNA	lncRNA	lncRNA	lncRNA	0	23	2	4.04364	4.053315	4.06299	0.0559439	0.034181	0.165463	0.146815
chrX	139880052	139880152	7905375	0	-	0.35	(0.32,0.35]	chrX	804457	479	INTRON	INTRON	ATP11C	ENSG00000101974.15	ENST00000370557.5:ENST00000682941.1:ENST00000485626.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	23	2	4.04364	4.053315	4.06299	0.0559439	0.034181	0.165463	0.146815
chr19	38405831	38405929	7065496	0	+	0.469388	(0.44,0.476]	chr19	705421	3	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	FAM98C	ENSG00000130244.13	ENST00000252530.10:ENST00000588262.5:ENST00000588348.5:ENST00000343358.11:ENST00000586372.5:ENST00000592992.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	50	2	2.60774	4.05326	5.49878	0.0255874	1.52058e-4	0.120269	0.0106137
chr15	22828104	22828203	5976502	0	+	0.484848	(0.476,0.515]	chr15	568394	40	UTR3	UTR3:EXON_MRNA	NIPA1	ENSG00000170113.16	ENST00000437912.6:ENST00000337435.9	protein_coding	protein_coding	protein_coding	protein_coding	1	46	2	3.01197	4.0531	5.09423	0.00633162	0.00204588	0.0722266	0.04086
chr2	111880211	111880310	1214847	0	-	0.50505	(0.476,0.515]	chr2	129232	2	SS5_PROX	SS5_PROX:INTRON	ANAPC1	ENSG00000153107.13	ENST00000341068.8:ENST00000451367.3:ENST00000628342.1:ENST00000489177.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	46	2	3.01197	4.0531	5.09423	0.00633162	0.00204588	0.0722266	0.04086
chr6	20452467	20452567	2827955	0	+	0.39	(0.378,0.408]	chr6	265583	124	INTRON	INTRON	E2F3	ENSG00000112242.16	ENST00000346618.8:ENST00000535432.2	protein_coding	protein_coding	protein_coding	protein_coding	1	51	2	3.05502	4.052965	5.05091	0.00689519	0.00118558	0.0717484	0.031662
chrX	73980451	73980551	7682463	0	+	0.39	(0.378,0.408]	chrX	786638	121	INTRON	INTRON	JPX	ENSG00000225470.8	ENST00000664637.1:ENST00000639185.1:ENST00000655090.1:ENST00000640437.1:ENST00000660546.1:ENST00000667886.1:ENST00000660840.1:ENST00000657179.1:ENST00000670506.1:ENST00000657910.1:ENST00000662120.1:ENST00000671207.1:ENST00000659254.1:ENST00000656624.1:ENST00000667573.1:ENST00000660856.1:ENST00000660836.1:ENST00000668590.1:ENST00000658649.1:ENST00000414209.6:ENST00000654137.1:ENST00000670994.1:ENST00000602772.5:ENST00000655879.1:ENST00000657372.1:ENST00000657096.1:ENST00000602985.6:ENST00000670685.1:ENST00000670503.1:ENST00000663027.1:ENST00000654995.1:ENST00000602895.6:ENST00000654374.1:ENST00000660087.1:ENST00000665032.1:ENST00000671336.1:ENST00000671476.1:ENST00000667057.1:ENST00000670192.1:ENST00000670464.1:ENST00000665345.1:ENST00000661546.1:ENST00000662543.1:ENST00000602938.6:ENST00000664295.1:ENST00000654005.1:ENST00000669149.1:ENST00000659852.1:ENST00000656509.1:ENST00000602294.6:ENST00000667294.1:ENST00000663470.1:ENST00000602920.6:ENST00000671021.1:ENST00000659849.1:ENST00000667937.1:ENST00000661130.1:ENST00000654196.1:ENST00000655994.1:ENST00000659373.1:ENST00000662239.1:ENST00000670805.1:ENST00000656263.1:ENST00000653069.1:ENST00000657638.1:ENST00000653808.1:ENST00000653929.1:ENST00000653885.1:ENST00000659023.1:ENST00000602546.5:ENST00000659622.1:ENST00000671518.1:ENST00000670408.1	lncRNA	lncRNA	lncRNA	lncRNA	1	51	2	3.05502	4.052965	5.05091	0.00689519	0.00118558	0.0717484	0.031662
chr2	232807647	232807746	1038377	0	+	0.40404	(0.378,0.408]	chr2	110765	6	INTRON	INTRON	GIGYF2	ENSG00000204120.16	ENST00000629305.2:ENST00000409480.5:ENST00000373563.9:ENST00000409547.5:ENST00000423659.5:ENST00000409196.7:ENST00000409451.7:ENST00000440945.5:ENST00000677591.1:ENST00000678230.1:ENST00000678339.1:ENST00000677450.1:ENST00000678466.1:ENST00000678885.1:ENST00000676848.1:ENST00000482952.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	69	2	2.66643	4.052675000000001	5.43892	0.00470023	2.28412e-4	0.0600108	0.0133228
chr3	172154066	172154166	1560695	0	+	0.41	(0.408,0.44]	chr3	161551	51	INTRON	INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000421757.5:ENST00000469491.5:ENST00000336824.8:ENST00000423424.5:ENST00000416957.5:ENST00000478016.1:ENST00000443501.1:ENST00000476794.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	46	2	3.14706	4.052615	4.95817	0.00382411	0.00372419	0.0562562	0.0535094
chr9	109090222	109090321	4312303	0	-	0.373737	(0.35,0.378]	chr9	396368	25	INTRON	INTRON	TMEM245	ENSG00000106771.13	ENST00000374586.8:ENST00000491854.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	51	2	2.57049	4.0526	5.53471	0.0262669	6.96925e-4	0.133676	0.024224
chr1	182855176	182855276	273141	0	+	0.37	(0.35,0.378]	chr1	31890	2	SS3_PROX	SS3_PROX:INTRON	DHX9	ENSG00000135829.17	ENST00000367549.4:ENST00000479271.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	480	2	3.68195	4.05249	4.42303	8.36494e-8	1.87379e-8	0.00012545000000000001	4.97375e-5
chr17	51280779	51280879	6627782	0	+	0.41	(0.408,0.44]	chr17	647382	3	SS5_PROX	SS5_PROX:INTRON	UTP18	ENSG00000011260.14	ENST00000225298.12:ENST00000508506.3:ENST00000583725.5:ENST00000583205.5:ENST00000579261.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	46	2	3.02513	4.05248	5.07983	0.0059965	0.00247652	0.0700606	0.0446195
chr21	43881643	43881743	7413954	0	+	0.41	(0.408,0.44]	chr21	755688	139	INTRON	INTRON	AGPAT3	ENSG00000160216.21	ENST00000291572.13:ENST00000448287.5	protein_coding	protein_coding	protein_coding	protein_coding	1	46	2	3.02513	4.05248	5.07983	0.0059965	0.00247652	0.0700606	0.0446195
chr4	70792574	70792672	1970331	0	+	0.418367	(0.408,0.44]	chr4	197527	14	UTR3	UTR3:EXON_MRNA:INTRON	RUFY3	ENSG00000018189.13	ENST00000381006.8:ENST00000226328.8:ENST00000502653.5:ENST00000504805.6:ENST00000512103.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	46	2	3.02513	4.05248	5.07983	0.0059965	0.00247652	0.0700606	0.0446195
chr22	20770492	20770592	7558781	0	-	0.41	(0.408,0.44]	chr22	773112	44	INTRON	INTRON	PI4KA	ENSG00000241973.11	ENST00000255882.11:ENST00000466162.5:ENST00000484220.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	50	2	3.10641	4.05239	4.99837	0.00555646	0.00131369	0.0648867	0.0333932
chr1	54359714	54359814	463294	0	-	0.47	(0.44,0.476]	chr1	55784	30	INTRON	INTRON	SSBP3	ENSG00000157216.16	ENST00000610401.5:ENST00000357475.9:ENST00000371319.8:ENST00000417664.7:ENST00000533946.6:ENST00000371320.8:ENST00000525990.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	22	2	3.97626	4.052345	4.12843	0.0337192	0.0300538	0.142135	0.134145
chr1	93195633	93195732	163327	0	+	0.444444	(0.44,0.476]	chr1	17679	15	INTRON	INTRON	CCDC18	ENSG00000122483.18	ENST00000343253.11:ENST00000401026.7:ENST00000690592.1:ENST00000370276.6:ENST00000690025.1:ENST00000481180.6:ENST00000692873.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	22	2	3.97626	4.052345	4.12843	0.0337192	0.0300538	0.142135	0.134145
chr1	155515626	155515726	562420	0	-	0.46	(0.44,0.476]	chr1	67101	328	INTRON	INTRON	ASH1L	ENSG00000116539.14	ENST00000676814.1:ENST00000392403.8:ENST00000368346.7:ENST00000677213.1:ENST00000678117.1:ENST00000679097.1:ENST00000679333.1:ENST00000677042.1:ENST00000678699.1:ENST00000677825.1:ENST00000679133.1:ENST00000548830.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	22	2	3.97626	4.052345	4.12843	0.0337192	0.0300538	0.142135	0.134145
chr1	161945988	161946088	237665	0	+	0.46	(0.44,0.476]	chr1	28629	96	INTRON	INTRON	ATF6	ENSG00000118217.7	ENST00000680688.1:ENST00000679853.1:ENST00000681738.1:ENST00000681801.1:ENST00000367942.4:ENST00000681001.1:ENST00000679886.1:ENST00000681169.1:ENST00000681492.1:ENST00000680481.1:ENST00000681557.1:ENST00000681912.1:ENST00000681541.1:ENST00000681036.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	22	2	3.97626	4.052345	4.12843	0.0337192	0.0300538	0.142135	0.134145
chr10	68976532	68976631	4443703	0	+	0.454545	(0.44,0.476]	chr10	409885	14	INTRON	INTRON	DDX21	ENSG00000165732.14	ENST00000685106.1:ENST00000687162.1:ENST00000684824.1:ENST00000354185.9:ENST00000686528.1:ENST00000690650.1:ENST00000690316.1:ENST00000620315.2:ENST00000685513.1:ENST00000688593.1:ENST00000692943.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	22	2	3.97626	4.052345	4.12843	0.0337192	0.0300538	0.142135	0.134145
chr10	132543566	132543666	4537736	0	+	0.47	(0.44,0.476]	chr10	418936	50	INTRON	INTRON	INPP5A	ENSG00000068383.19	ENST00000368594.8:ENST00000368593.7:ENST00000423490.5	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.97626	4.052345	4.12843	0.0337192	0.0300538	0.142135	0.134145
chr11	17371019	17371116	4749046	0	+	0.443299	(0.44,0.476]	chr11	439596	17	INTRON	INTRON	NCR3LG1	ENSG00000188211.9	ENST00000338965.9:ENST00000530403.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	22	2	3.97626	4.052345	4.12843	0.0337192	0.0300538	0.142135	0.134145
chr12	1409697	1409792	5062040	0	+	0.463158	(0.44,0.476]	chr12	477757	11	INTRON	INTRON	ERC1	ENSG00000082805.21	ENST00000543086.7:ENST00000360905.9:ENST00000542302.6:ENST00000546231.6:ENST00000347735.10:ENST00000397203.7:ENST00000440394.7:ENST00000545948.5:ENST00000589028.6:ENST00000355446.9:ENST00000538971.6:ENST00000588412.5:ENST00000539802.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	22	2	3.97626	4.052345	4.12843	0.0337192	0.0300538	0.142135	0.134145
chr12	109995499	109995598	5408380	0	-	0.444444	(0.44,0.476]	chr12	516334	34	INTRON	INTRON	GIT2	ENSG00000139436.22	ENST00000355312.8:ENST00000361006.9:ENST00000457474.6:ENST00000553118.5:ENST00000551209.5:ENST00000550186.5:ENST00000547815.5:ENST00000320063.10:ENST00000551455.5:ENST00000548643.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	22	2	3.97626	4.052345	4.12843	0.0337192	0.0300538	0.142135	0.134145
chr12	123736195	123736281	5244323	0	+	0.465116	(0.44,0.476]	chr12	498583	4	UTR3	UTR3:EXON_MRNA:INTRON	ATP6V0A2	ENSG00000185344.15	ENST00000330342.8:ENST00000613625.5:ENST00000675344.1:ENST00000540368.6:ENST00000504192.2:ENST00000674794.1:ENST00000545059.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	22	2	3.97626	4.052345	4.12843	0.0337192	0.0300538	0.142135	0.134145
chr16	2543713	2543813	6278918	0	+	0.47	(0.44,0.476]	chr16	600618	43	INTRON	INTRON	PDPK1	ENSG00000140992.19	ENST00000566659.1:ENST00000441549.7:ENST00000268673.11:ENST00000474706.6:ENST00000342085.9:ENST00000570136.5:ENST00000492021.6:ENST00000389224.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	22	2	3.97626	4.052345	4.12843	0.0337192	0.0300538	0.142135	0.134145
chr17	62971447	62971547	6655048	0	+	0.46	(0.44,0.476]	chr17	649602	43	INTRON	INTRON	TANC2	ENSG00000170921.16	ENST00000689528.1	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.97626	4.052345	4.12843	0.0337192	0.0300538	0.142135	0.134145
chr19	4975121	4975221	7003476	0	+	0.45	(0.44,0.476]	chr19	694800	55	INTRON	INTRON	KDM4B	ENSG00000127663.15	ENST00000159111.9:ENST00000611640.4:ENST00000588337.5:ENST00000381759.8	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.97626	4.052345	4.12843	0.0337192	0.0300538	0.142135	0.134145
chr2	10609585	10609683	1065590	0	-	0.44898	(0.44,0.476]	chr2	113714	3	INTRON	INTRON	NOL10	ENSG00000115761.17	ENST00000695464.1:ENST00000695470.1:ENST00000695467.1:ENST00000695468.1:ENST00000695469.1:ENST00000695466.1:ENST00000381685.10:ENST00000695471.1:ENST00000345985.7:ENST00000538384.5:ENST00000695472.1:ENST00000695473.1:ENST00000695475.1:ENST00000695476.1:ENST00000695477.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	22	2	3.97626	4.052345	4.12843	0.0337192	0.0300538	0.142135	0.134145
chr2	73761695	73761781	1156172	0	-	0.465116	(0.44,0.476]	chr2	123596	6	EXON_MRNA	EXON_MRNA	ENSG00000280037	ENSG00000280037.1	ENST00000624373.1	TEC	TEC	TEC	TEC	0	22	2	3.97626	4.052345	4.12843	0.0337192	0.0300538	0.142135	0.134145
chr21	42870363	42870463	7467818	0	-	0.46	(0.44,0.476]	chr21	760973	64	INTRON	INTRON	WDR4	ENSG00000160193.12	ENST00000330317.6:ENST00000476326.5:ENST00000398208.3:ENST00000492742.5:ENST00000479429.5:ENST00000463902.5:ENST00000470658.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	22	2	3.97626	4.052345	4.12843	0.0337192	0.0300538	0.142135	0.134145
chr3	185733419	185733519	1885432	0	-	0.46	(0.44,0.476]	chr3	188573	347	INTRON	INTRON	IGF2BP2	ENSG00000073792.16	ENST00000382199.7:ENST00000346192.7:ENST00000457616.6:ENST00000421047.3:ENST00000461957.5:ENST00000493302.5:ENST00000466476.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	22	2	3.97626	4.052345	4.12843	0.0337192	0.0300538	0.142135	0.134145
chr4	70729247	70729347	1969678	0	+	0.47	(0.44,0.476]	chr4	197445	61	INTRON	INTRON	RUFY3	ENSG00000018189.13	ENST00000503876.5:ENST00000417478.6:ENST00000381006.8:ENST00000226328.8	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.97626	4.052345	4.12843	0.0337192	0.0300538	0.142135	0.134145
chr6	7409590	7409688	2800036	0	+	0.469388	(0.44,0.476]	chr6	263866	39	INTRON	INTRON	RIOK1	ENSG00000124784.9	ENST00000379834.7:ENST00000264874.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	22	2	3.97626	4.052345	4.12843	0.0337192	0.0300538	0.142135	0.134145
chr6	73631204	73631304	3139888	0	-	0.47	(0.44,0.476]	chr6	292578	89	INTRON	INTRON	SLC17A5	ENSG00000119899.13	ENST00000355773.6	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.97626	4.052345	4.12843	0.0337192	0.0300538	0.142135	0.134145
chr7	92344477	92344577	3353787	0	+	0.46	(0.44,0.476]	chr7	312525	1	SS3_PROX	SS3_PROX:INTRON	ANKIB1	ENSG00000001629.10	ENST00000265742.8:ENST00000413588.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	22	2	3.97626	4.052345	4.12843	0.0337192	0.0300538	0.142135	0.134145
chr9	99222732	99222822	4175949	0	+	0.455556	(0.44,0.476]	chr9	380719	2	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	SEC61B	ENSG00000106803.10	ENST00000498603.5:ENST00000223641.5:ENST00000481573.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	22	2	3.97626	4.052345	4.12843	0.0337192	0.0300538	0.142135	0.134145
chr9	125107343	125107443	4351618	0	-	0.46	(0.44,0.476]	chr9	399530	409	INTRON	INTRON	SCAI	ENSG00000173611.18	ENST00000336505.11:ENST00000373549.8:ENST00000477186.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	22	2	3.97626	4.052345	4.12843	0.0337192	0.0300538	0.142135	0.134145
chrX	73976161	73976261	7682420	0	+	0.47	(0.44,0.476]	chrX	786638	78	INTRON	INTRON	JPX	ENSG00000225470.8	ENST00000664637.1:ENST00000639185.1:ENST00000655090.1:ENST00000640437.1:ENST00000660546.1:ENST00000667886.1:ENST00000660840.1:ENST00000657179.1:ENST00000670506.1:ENST00000657910.1:ENST00000662120.1:ENST00000671207.1:ENST00000659254.1:ENST00000656624.1:ENST00000667573.1:ENST00000660856.1:ENST00000660836.1:ENST00000668590.1:ENST00000658649.1:ENST00000414209.6:ENST00000654137.1:ENST00000670994.1:ENST00000602772.5:ENST00000655879.1:ENST00000657372.1:ENST00000657096.1:ENST00000602985.6:ENST00000670685.1:ENST00000670503.1:ENST00000663027.1:ENST00000654995.1:ENST00000602895.6:ENST00000654374.1:ENST00000660087.1:ENST00000665032.1:ENST00000671336.1:ENST00000671476.1:ENST00000667057.1:ENST00000670192.1:ENST00000670464.1:ENST00000665345.1:ENST00000661546.1:ENST00000662543.1:ENST00000602938.6:ENST00000664295.1:ENST00000654005.1:ENST00000669149.1:ENST00000659852.1:ENST00000656509.1:ENST00000602294.6:ENST00000667294.1:ENST00000663470.1:ENST00000602920.6:ENST00000671021.1:ENST00000659849.1:ENST00000667937.1:ENST00000661130.1:ENST00000654196.1:ENST00000655994.1:ENST00000659373.1:ENST00000662239.1:ENST00000670805.1:ENST00000656263.1:ENST00000653069.1:ENST00000657638.1:ENST00000653808.1:ENST00000653929.1:ENST00000653885.1:ENST00000659023.1:ENST00000602546.5:ENST00000659622.1:ENST00000671518.1:ENST00000670408.1	lncRNA	lncRNA	lncRNA	lncRNA	0	22	2	3.97626	4.052345	4.12843	0.0337192	0.0300538	0.142135	0.134145
chr12	62520321	62520421	5151705	0	+	0.29	(0.28,0.32]	chr12	487506	113	INTRON	INTRON	MON2	ENSG00000061987.16	ENST00000641654.1:ENST00000546600.5:ENST00000393630.8:ENST00000547095.5:ENST00000552738.5:ENST00000393629.6:ENST00000552115.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	53	2	3.17453	4.0519099999999995	4.92929	0.0098607	0.00429297	0.0838128	0.0599065
chr17	51233008	51233108	6797599	0	-	0.42	(0.408,0.44]	chr17	671120	74	INTRON	INTRON	MBTD1	ENSG00000011258.16	ENST00000586178.6:ENST00000405860.7:ENST00000591270.1:ENST00000593259.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	51	2	3.2451	4.0519099999999995	4.85872	0.00337792	0.00221911	0.0516884	0.0435144
chr3	43513421	43513521	1674348	0	-	0.29	(0.28,0.32]	chr3	170972	803	INTRON	INTRON	ANO10	ENSG00000160746.13	ENST00000292246.8:ENST00000350459.8:ENST00000396091.7:ENST00000414522.6:ENST00000451430.6:ENST00000448045.1	protein_coding	protein_coding	protein_coding	protein_coding	1	53	2	3.17453	4.0519099999999995	4.92929	0.0098607	0.00429297	0.0838128	0.0599065
chr16	58606202	58606302	6496146	0	-	0.39	(0.378,0.408]	chr16	628638	63	INTRON	INTRON	CNOT1	ENSG00000125107.19	ENST00000317147.10:ENST00000569240.5:ENST00000567188.5:ENST00000441024.6:ENST00000565605.5:ENST00000564557.1:ENST00000569916.1:ENST00000565697.1:ENST00000569020.5:ENST00000568158.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	47	2	3.22599	4.051805	4.87762	0.00553849	0.00288652	0.0648867	0.0494641
chr3	50000312	50000412	1423563	0	+	0.31	(0.28,0.32]	chr3	149994	4	INTRON	INTRON	RBM6	ENSG00000004534.15	ENST00000442092.5:ENST00000443081.5:ENST00000419610.5:ENST00000441115.5:ENST00000422955.5:ENST00000454079.5:ENST00000266022.9:ENST00000425608.5:ENST00000434592.5:ENST00000464013.5:ENST00000483350.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	53	2	2.80157	4.05155	5.30153	0.0147132	0.00332518	0.106558	0.0512081
chr19	1426547	1426647	6995292	0	+	0.61	(0.57,1]	chr19	693206	3	EXON_MRNA	EXON_MRNA:INTRON	DAZAP1	ENSG00000071626.17	ENST00000336761.10:ENST00000233078.9:ENST00000592522.5:ENST00000586579.5:ENST00000587079.5:ENST00000592453.2:ENST00000589484.5:ENST00000585485.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	9	168	2	3.32781	4.051505	4.7752	9.93351e-8	7.82868e-10	1.37407e-4	4.15443e-6
chr11	68568654	68568752	4818431	0	+	0.397959	(0.378,0.408]	chr11	448989	11	INTRON	INTRON	PPP6R3	ENSG00000110075.15	ENST00000534534.5:ENST00000524845.5:ENST00000393800.7:ENST00000265637.8:ENST00000524904.5:ENST00000393801.7:ENST00000265636.9:ENST00000529710.5:ENST00000527403.6:ENST00000534190.5:ENST00000526574.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	47	2	2.92665	4.05146	5.17627	0.0086017	0.00208234	0.083729	0.0411801
chr11	78136542	78136641	4998313	0	-	0.393939	(0.378,0.408]	chr11	472387	8	INTRON	INTRON	ALG8	ENSG00000159063.14	ENST00000679559.1:ENST00000680398.1:ENST00000681221.1:ENST00000527099.2:ENST00000681489.1:ENST00000525783.6:ENST00000529139.6:ENST00000680761.1:ENST00000525870.6:ENST00000680866.1:ENST00000680223.1:ENST00000526737.6:ENST00000681575.1:ENST00000299626.10:ENST00000680467.1:ENST00000679497.1:ENST00000681351.1:ENST00000679697.1:ENST00000680580.1:ENST00000526849.6:ENST00000680256.1:ENST00000680797.1:ENST00000681723.1:ENST00000680142.1:ENST00000679685.1:ENST00000681384.1:ENST00000679874.1:ENST00000679444.1:ENST00000680459.1:ENST00000681699.1:ENST00000679986.1:ENST00000680063.1:ENST00000530608.6:ENST00000681765.1:ENST00000681225.1:ENST00000681417.1:ENST00000530910.6:ENST00000680329.1:ENST00000376156.7:ENST00000679648.1:ENST00000680101.1:ENST00000680829.1:ENST00000525761.3:ENST00000532440.6:ENST00000680996.1:ENST00000532306.6:ENST00000680399.1:ENST00000679539.1:ENST00000615266.5:ENST00000681957.1:ENST00000532552.2:ENST00000680643.1:ENST00000530454.6:ENST00000525755.6:ENST00000532050.5:ENST00000526928.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	47	2	2.92665	4.05146	5.17627	0.0086017	0.00208234	0.083729	0.0411801
chr7	150275352	150275452	3673168	0	-	0.4	(0.378,0.408]	chr7	340876	259	INTRON	INTRON	ACTR3C	ENSG00000106526.11	ENST00000478393.5:ENST00000683684.1:ENST00000252071.8	protein_coding	protein_coding	protein_coding	protein_coding	1	47	2	2.92665	4.05146	5.17627	0.0086017	0.00208234	0.083729	0.0411801
chr10	68937595	68937693	4443389	0	+	0.459184	(0.44,0.476]	chr10	409801	1	INTRON	INTRON	DDX50	ENSG00000107625.14	ENST00000373585.8:ENST00000466265.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	46	2	3.2029	4.05145	4.9	0.00423315	0.00308681	0.0572185	0.0510391
chr9	130748654	130748754	4214211	0	+	0.53	(0.515,0.57]	chr9	386427	338	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000393293.4	protein_coding	protein_coding	protein_coding	protein_coding	4	80	2	1.84511	4.0514399999999995	6.25777	0.0167182	3.29927e-6	0.110511	0.00128575
chr11	65440147	65440247	4805944	0	+	0.29	(0.28,0.32]	chr11	446554	175	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2:ENST00000691530.1:ENST00000693747.1	lncRNA	lncRNA	lncRNA	lncRNA	49	2134	2	3.55052	4.05134	4.55216	3.73897e-9	8.27435e-10	1.82057e-5	4.3244e-6
chr17	34990562	34990662	6599153	0	+	0.47	(0.44,0.476]	chr17	642128	2	SS3_PROX	SS3_PROX:INTRON	LIG3	ENSG00000005156.12	ENST00000378526.9:ENST00000585941.5:ENST00000262327.9:ENST00000585740.5:ENST00000588109.5:ENST00000586435.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	46	2	2.9586	4.05119	5.14378	0.00758318	0.00184943	0.0773151	0.0388609
chr1	8499928	8500028	370590	0	-	0.53	(0.515,0.57]	chr1	43479	20	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000377464.5:ENST00000400907.6:ENST00000656437.1:ENST00000464972.5:ENST00000659924.1:ENST00000480342.5:ENST00000507012.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	21	2	3.89856	4.051185	4.20381	0.0280943	0.0189208	0.137011	0.108861
chr1	16626910	16626999	383641	0	-	0.550562	(0.515,0.57]	chr1	45187	4	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CROCCP2	ENSG00000215908.10	ENST00000639594.1:ENST00000640476.1:ENST00000639456.1:ENST00000412962.4:ENST00000635081.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	21	2	3.89856	4.051185	4.20381	0.0280943	0.0189208	0.137011	0.108861
chr11	66601341	66601438	4810740	0	+	0.546392	(0.515,0.57]	chr11	447824	4	INTRON	INTRON	CCS	ENSG00000173992.9	ENST00000530384.5:ENST00000533244.6:ENST00000530961.5:ENST00000531990.1:ENST00000310190.8:ENST00000534763.1:ENST00000525435.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	21	2	3.89856	4.051185	4.20381	0.0280943	0.0189208	0.137011	0.108861
chr11	111748214	111748314	5041563	0	-	0.52	(0.515,0.57]	chr11	474798	2	SS3_PROX	SS3_PROX:INTRON	PPP2R1B	ENSG00000137713.16	ENST00000311129.9:ENST00000426998.6:ENST00000527614.6:ENST00000534521.5:ENST00000341980.10:ENST00000393055.6:ENST00000531890.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	21	2	3.89856	4.051185	4.20381	0.0280943	0.0189208	0.137011	0.108861
chr12	64618543	64618643	5155078	0	+	0.54	(0.515,0.57]	chr12	488093	70	INTRON	INTRON	RASSF3	ENSG00000153179.13	ENST00000637125.1:ENST00000542104.6:ENST00000283172.8:ENST00000336061.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	21	2	3.89856	4.051185	4.20381	0.0280943	0.0189208	0.137011	0.108861
chr16	48370576	48370676	6483913	0	-	0.53	(0.515,0.57]	chr16	627085	48	INTRON	INTRON	SIAH1	ENSG00000196470.12	ENST00000568007.5:ENST00000394725.3:ENST00000563745.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	21	2	3.89856	4.051185	4.20381	0.0280943	0.0189208	0.137011	0.108861
chr17	6902305	6902405	6717226	0	-	0.53	(0.515,0.57]	chr17	658643	206	INTRON	INTRON	ALOX12-AS1	ENSG00000215067.11	ENST00000653385.1:ENST00000659418.1:ENST00000572385.5:ENST00000570562.5:ENST00000575889.5	lncRNA	lncRNA	lncRNA	lncRNA	0	21	2	3.89856	4.051185	4.20381	0.0280943	0.0189208	0.137011	0.108861
chr17	13001189	13001286	6726307	0	-	0.525773	(0.515,0.57]	chr17	660059	4	INTRON	INTRON	ELAC2	ENSG00000006744.19	ENST00000338034.9:ENST00000484122.5:ENST00000480891.5:ENST00000395962.6:ENST00000487229.6:ENST00000426905.7:ENST00000584650.5:ENST00000492559.5:ENST00000446899.5:ENST00000578991.5:ENST00000476042.1:ENST00000578104.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	21	2	3.89856	4.051185	4.20381	0.0280943	0.0189208	0.137011	0.108861
chr19	926847	926944	6992493	0	+	0.56701	(0.515,0.57]	chr19	692376	4	INTRON	INTRON	ARID3A	ENSG00000116017.11	ENST00000585895.1:ENST00000263620.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	21	2	3.89856	4.051185	4.20381	0.0280943	0.0189208	0.137011	0.108861
chr19	1430862	1430957	6995339	0	+	0.526316	(0.515,0.57]	chr19	693220	1	INTRON	INTRON	DAZAP1	ENSG00000071626.17	ENST00000336761.10:ENST00000233078.9:ENST00000592522.5:ENST00000587079.5:ENST00000592453.2:ENST00000589484.5:ENST00000585485.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	21	2	3.89856	4.051185	4.20381	0.0280943	0.0189208	0.137011	0.108861
chr19	1905923	1906020	6995519	0	+	0.515464	(0.515,0.57]	chr19	693282	6	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	SCAMP4:ADAT3	ENSG00000227500.10:ENSG00000213638.6	ENST00000452128.6:ENST00000414057.6:ENST00000460767.5:ENST00000316097.13:ENST00000489554.1:ENST00000329478.4:ENST00000588555.1:ENST00000409472.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	21	2	3.89856	4.051185	4.20381	0.0280943	0.0189208	0.137011	0.108861
chr21	10587769	10587869	7369910	0	+	0.52	(0.515,0.57]	chr21	752148	88	INTRON	INTRON	ENSG00000273840	ENSG00000273840.1	ENST00000612267.1	lncRNA	lncRNA	lncRNA	lncRNA	0	21	2	3.89856	4.051185	4.20381	0.0280943	0.0189208	0.137011	0.108861
chr7	129021156	129021256	3636243	0	-	0.52	(0.515,0.57]	chr7	338142	26	INTRON	INTRON	TNPO3	ENSG00000064419.14	ENST00000627585.2:ENST00000265388.10:ENST00000471234.5:ENST00000482320.5:ENST00000471166.1	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	3.89856	4.051185	4.20381	0.0280943	0.0189208	0.137011	0.108861
chrX	11232465	11232565	7759674	0	-	0.52	(0.515,0.57]	chrX	793496	351	INTRON	INTRON	ARHGAP6	ENSG00000047648.23	ENST00000657361.1:ENST00000380736.5:ENST00000337414.9:ENST00000495242.5:ENST00000303025.10:ENST00000489330.6:ENST00000380718.1:ENST00000380717.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	21	2	3.89856	4.051185	4.20381	0.0280943	0.0189208	0.137011	0.108861
chrX	45081887	45081981	7650718	0	+	0.542553	(0.515,0.57]	chrX	782831	14	INTRON	INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1:ENST00000675525.1:ENST00000414389.5:ENST00000675546.1:ENST00000676026.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	21	2	3.89856	4.051185	4.20381	0.0280943	0.0189208	0.137011	0.108861
chrX	130853223	130853323	7891057	0	-	0.55	(0.515,0.57]	chrX	803362	436	INTRON	INTRON	ENOX2	ENSG00000165675.19	ENST00000338144.8:ENST00000394363.6:ENST00000370935.5:ENST00000686943.1:ENST00000432489.5:ENST00000492263.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	21	2	3.89856	4.051185	4.20381	0.0280943	0.0189208	0.137011	0.108861
chr1	246211325	246211425	677748	0	-	0.37	(0.35,0.378]	chr1	79733	177	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000453676.5:ENST00000462422.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	52	2	2.48657	4.051005	5.61544	0.032907	5.06729e-4	0.145164	0.020816
chr3	32714845	32714942	1393412	0	+	0.350515	(0.35,0.378]	chr3	145874	11	INTRON	INTRON	CNOT10	ENSG00000182973.20	ENST00000331889.10:ENST00000328834.10:ENST00000435630.5:ENST00000494439.5:ENST00000556853.5:ENST00000454516.7:ENST00000416457.5:ENST00000455381.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	65	2	2.84057	4.05091	5.26125	0.00191117	0.00189462	0.0402736	0.03947
chr3	195367054	195367153	1895151	0	-	0.383838	(0.378,0.408]	chr3	189674	89	INTRON	INTRON	ACAP2	ENSG00000114331.16	ENST00000326793.11:ENST00000635383.1:ENST00000480906.5:ENST00000481463.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	75	2	2.42827	4.050825	5.67338	0.00336942	3.05145e-4	0.0532965	0.0161236
chr20	32828936	32829036	7257257	0	+	0.52	(0.515,0.57]	chr20	737257	25	INTRON	INTRON	MAPRE1	ENSG00000101367.9	ENST00000375571.6	protein_coding	protein_coding	protein_coding	protein_coding	2	59	2	2.48902	4.0507550000000005	5.61249	0.00760558	4.24748e-5	0.0749571	0.00526976
chr7	133037586	133037686	3645444	0	-	0.53	(0.515,0.57]	chr7	338876	12	INTRON	INTRON	CHCHD3	ENSG00000106554.13	ENST00000262570.10:ENST00000448878.6:ENST00000496427.5:ENST00000423635.5:ENST00000481152.2:ENST00000457942.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	59	2	2.6325	4.050655	5.46881	0.00439001	9.03271e-5	0.0585064	0.00795396
chr11	118999609	118999702	4873988	0	+	0.376344	(0.35,0.378]	chr11	455378	1	INTRON	INTRON	CENATAC	ENSG00000186166.9	ENST00000334418.6:ENST00000524670.5:ENST00000526463.5:ENST00000532132.5:ENST00000580556.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	65	2	2.44701	4.05059	5.65417	0.00900997	4.33402e-4	0.0851009	0.0190829
chr1	19396688	19396788	388016	0	-	0.54	(0.515,0.57]	chr1	46371	107	INTRON	INTRON	CAPZB	ENSG00000077549.19	ENST00000264202.8:ENST00000264203.7:ENST00000375142.5:ENST00000482808.2:ENST00000674449.1:ENST00000674390.1:ENST00000375144.6:ENST00000674432.1:ENST00000433834.5:ENST00000674228.1:ENST00000459967.6:ENST00000489607.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	42	2	3.19178	4.05045	4.90912	0.00289534	0.0021669	0.0494641	0.0417866
chr12	96373920	96374020	5395020	0	-	0.4	(0.378,0.408]	chr12	514463	387	INTRON	INTRON	CDK17	ENSG00000059758.8	ENST00000261211.8:ENST00000543119.6:ENST00000542666.5:ENST00000551816.5:ENST00000552496.5:ENST00000552262.1	protein_coding	protein_coding	protein_coding	protein_coding	3	82	2	2.13797	4.05045	5.96293	0.0124882	1.59815e-5	0.0923444	0.00301858
chr7	74191884	74191975	3332406	0	+	0.538462	(0.515,0.57]	chr7	310057	2	INTRON	INTRON	EIF4H	ENSG00000106682.16	ENST00000678438.1:ENST00000677998.1:ENST00000495187.2:ENST00000265753.13:ENST00000353999.6:ENST00000677570.1:ENST00000677681.1:ENST00000678815.1:ENST00000679266.1:ENST00000679287.1:ENST00000678341.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	42	2	3.19178	4.05045	4.90912	0.00289534	0.0021669	0.0494641	0.0417866
chr7	75510233	75510331	3558962	0	-	0.530612	(0.515,0.57]	chr7	331568	20	INTRON	INTRON	PMS2P3	ENSG00000127957.19	ENST00000693762.1:ENST00000394921.8:ENST00000430602.5:ENST00000418756.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	1	42	2	3.19178	4.05045	4.90912	0.00289534	0.0021669	0.0494641	0.0417866
chr15	82834030	82834129	6077172	0	+	0.484848	(0.476,0.515]	chr15	578901	6	UTR3	UTR3:EXON_MRNA	WHAMM	ENSG00000156232.7	ENST00000286760.5	protein_coding	protein_coding	protein_coding	protein_coding	3	79	2	2.34867	4.05035	5.75203	0.00539703	4.51048e-5	0.0644048	0.0054649
chr17	5600567	5600667	6716016	0	-	0.29	(0.28,0.32]	chr17	658490	157	INTRON	INTRON	NLRP1	ENSG00000091592.16	ENST00000576905.5:ENST00000572143.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	72	2	2.84671	4.050295	5.25388	0.00385849	0.00216662	0.0542786	0.0434015
chr3	141983574	141983674	1833774	0	-	0.39	(0.378,0.408]	chr3	184307	45	INTRON	INTRON	TFDP2	ENSG00000114126.18	ENST00000489671.6:ENST00000499676.5:ENST00000486111.5:ENST00000477292.5:ENST00000495310.5:ENST00000467072.5:ENST00000487734.5:ENST00000479040.5:ENST00000467667.5:ENST00000478006.5:ENST00000497579.5:ENST00000492919.1:ENST00000464782.5:ENST00000488107.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	75	2	2.46509	4.04986	5.63463	0.00287152	3.59226e-4	0.0494641	0.0175484
chr1	8460873	8460973	370197	0	-	0.36	(0.35,0.378]	chr1	43461	222	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000377464.5:ENST00000400907.6:ENST00000656437.1:ENST00000464972.5:ENST00000659924.1	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	3.80129	4.04984	4.29839	0.0504034	0.0294717	0.17488	0.128055
chr1	55084064	55084140	464513	0	-	0.355263	(0.35,0.378]	chr1	55980	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	USP24	ENSG00000162402.14	ENST00000294383.7:ENST00000472566.1:ENST00000512504.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	23	2	3.80129	4.04984	4.29839	0.0504034	0.0294717	0.17488	0.128055
chr1	163301191	163301288	574937	0	-	0.350515	(0.35,0.378]	chr1	69739	1	INTRON	INTRON	ENSG00000232995	ENSG00000232995.7	ENST00000451759.5:ENST00000449680.5:ENST00000427213.5:ENST00000429865.5:ENST00000528019.5:ENST00000528689.5	lncRNA	lncRNA	lncRNA	lncRNA	0	23	2	3.80129	4.04984	4.29839	0.0504034	0.0294717	0.17488	0.128055
chr1	200620210	200620310	617744	0	-	0.37	(0.35,0.378]	chr1	73097	4	SS5_PROX	SS5_PROX:INTRON	KIF14	ENSG00000118193.12	ENST00000367350.5	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	3.80129	4.04984	4.29839	0.0504034	0.0294717	0.17488	0.128055
chr1	230214464	230214563	335553	0	+	0.373737	(0.35,0.378]	chr1	38942	108	INTRON	INTRON	GALNT2	ENSG00000143641.10	ENST00000494106.1:ENST00000366672.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	23	2	3.80129	4.04984	4.29839	0.0504034	0.0294717	0.17488	0.128055
chr1	246005160	246005260	675682	0	-	0.37	(0.35,0.378]	chr1	79713	167	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000391836.3:ENST00000464398.1:ENST00000453676.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	23	2	3.80129	4.04984	4.29839	0.0504034	0.0294717	0.17488	0.128055
chr17	4354471	4354571	6712244	0	-	0.36	(0.35,0.378]	chr17	657734	88	INTRON	INTRON	UBE2G1	ENSG00000132388.13	ENST00000396981.7:ENST00000572484.5:ENST00000574633.5:ENST00000571980.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	23	2	3.80129	4.04984	4.29839	0.0504034	0.0294717	0.17488	0.128055
chr17	16430145	16430240	6562562	0	+	0.368421	(0.35,0.378]	chr17	637884	8	INTRON	INTRON	TRPV2	ENSG00000187688.15	ENST00000338560.12:ENST00000583241.1:ENST00000577277.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	23	2	3.80129	4.04984	4.29839	0.0504034	0.0294717	0.17488	0.128055
chr2	96201746	96201846	1179924	0	-	0.37	(0.35,0.378]	chr2	126153	58	INTRON	INTRON	STARD7	ENSG00000084090.14	ENST00000337288.10:ENST00000443962.1:ENST00000488084.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	23	2	3.80129	4.04984	4.29839	0.0504034	0.0294717	0.17488	0.128055
chr2	178195673	178195773	928156	0	+	0.37	(0.35,0.378]	chr2	102003	6	INTRON	INTRON	OSBPL6	ENSG00000079156.17	ENST00000359685.7:ENST00000392505.6:ENST00000477646.1:ENST00000357080.8:ENST00000190611.9:ENST00000409045.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	23	2	3.80129	4.04984	4.29839	0.0504034	0.0294717	0.17488	0.128055
chr5	72871351	72871450	2387681	0	+	0.353535	(0.35,0.378]	chr5	230395	53	INTRON	INTRON	TNPO1	ENSG00000083312.19	ENST00000680533.1:ENST00000520850.5:ENST00000337273.10:ENST00000680025.1:ENST00000523768.5:ENST00000681711.1:ENST00000679378.1:ENST00000506351.6:ENST00000506528.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	23	2	3.80129	4.04984	4.29839	0.0504034	0.0294717	0.17488	0.128055
chr5	81277087	81277187	2662674	0	-	0.36	(0.35,0.378]	chr5	252321	259	INTRON	INTRON	CKMT2-AS1	ENSG00000247572.9	ENST00000663674.1:ENST00000503483.6:ENST00000511495.1:ENST00000512287.1:ENST00000502041.3:ENST00000690798.1:ENST00000670957.1:ENST00000660242.1:ENST00000500148.6:ENST00000669977.1:ENST00000656836.1:ENST00000501927.2:ENST00000505295.1	lncRNA	lncRNA	lncRNA	lncRNA	0	23	2	3.80129	4.04984	4.29839	0.0504034	0.0294717	0.17488	0.128055
chr5	103167654	103167737	2440527	0	+	0.361446	(0.35,0.378]	chr5	234274	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PPIP5K2	ENSG00000145725.20	ENST00000321521.13:ENST00000358359.8:ENST00000613674.4:ENST00000414217.5:ENST00000627916.2	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	3.80129	4.04984	4.29839	0.0504034	0.0294717	0.17488	0.128055
chr6	2096686	2096786	3045706	0	-	0.37	(0.35,0.378]	chr6	283438	534	INTRON	INTRON	GMDS	ENSG00000112699.11	ENST00000380815.5:ENST00000530927.5	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	3.80129	4.04984	4.29839	0.0504034	0.0294717	0.17488	0.128055
chrX	113851499	113851599	7866554	0	-	0.37	(0.35,0.378]	chrX	801544	2353	EXON_LNCRNA	EXON_LNCRNA:INTRON	XACT	ENSG00000241743.4	ENST00000468762.3:ENST00000674361.1	lncRNA	lncRNA	lncRNA	lncRNA	0	23	2	3.80129	4.04984	4.29839	0.0504034	0.0294717	0.17488	0.128055
chr1	21098475	21098574	392844	0	-	0.454545	(0.44,0.476]	chr1	46832	89	INTRON	INTRON	EIF4G3	ENSG00000075151.24	ENST00000374935.7:ENST00000602326.6:ENST00000685872.1:ENST00000686579.1:ENST00000688741.1:ENST00000684485.1:ENST00000400422.6:ENST00000634879.2:ENST00000693470.1:ENST00000685814.1:ENST00000356916.7:ENST00000682284.1:ENST00000438975.5:ENST00000411888.5:ENST00000463775.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	49	2	2.97451	4.04982	5.12513	0.00853825	7.96486e-4	0.0780043	0.0258804
chr1	161768697	161768797	235869	0	+	0.45	(0.44,0.476]	chr1	28516	15	INTRON	INTRON	ATF6	ENSG00000118217.7	ENST00000680688.1:ENST00000679853.1:ENST00000681738.1:ENST00000681801.1:ENST00000681779.1:ENST00000367942.4:ENST00000681001.1:ENST00000679886.1:ENST00000681169.1:ENST00000681492.1:ENST00000680481.1:ENST00000680180.1:ENST00000681187.1:ENST00000680462.1:ENST00000680633.1:ENST00000681557.1:ENST00000681912.1:ENST00000679833.1:ENST00000681541.1:ENST00000681036.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	49	2	2.97451	4.04982	5.12513	0.00853825	7.96486e-4	0.0780043	0.0258804
chr22	19805764	19805862	7555132	0	-	0.44898	(0.44,0.476]	chr22	772419	32	INTRON	INTRON	GNB1L	ENSG00000185838.14	ENST00000329517.11:ENST00000403325.5:ENST00000405009.5:ENST00000460402.5:ENST00000481086.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	49	2	2.97451	4.04982	5.12513	0.00853825	7.96486e-4	0.0780043	0.0258804
chr2	167913353	167913453	1258936	0	-	0.28	[0,0.28]	chr2	133340	122	INTRON	INTRON	B3GALT1-AS1	ENSG00000235335.3	ENST00000430546.2:ENST00000657553.1:ENST00000670221.1:ENST00000436982.2	lncRNA	lncRNA	lncRNA	lncRNA	4	106	2	1.95835	4.049675	6.141	0.014237	3.6661e-4	0.103751	0.0177832
chr1	174180545	174180645	257314	0	+	0.5	(0.476,0.515]	chr1	30720	205	INTRON	INTRON	RABGAP1L	ENSG00000152061.24	ENST00000357444.10:ENST00000251507.8:ENST00000681986.1:ENST00000635248.1:ENST00000457696.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	46	2	3.19119	4.0494	4.90761	0.00386428	0.00325748	0.0542786	0.0524329
chr15	40189951	40190051	6001542	0	+	0.34	(0.32,0.35]	chr15	570623	25	INTRON	INTRON	BUB1B	ENSG00000156970.13	ENST00000412359.7:ENST00000287598.11:ENST00000559733.5:ENST00000557848.1:ENST00000559772.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	50	2	2.96746	4.049345000000001	5.13123	0.00815799	0.00394704	0.0810802	0.0548259
chr1	12453238	12453338	30542	0	+	0.42	(0.408,0.44]	chr1	3762	361	INTRON	INTRON	VPS13D	ENSG00000048707.15	ENST00000620676.6:ENST00000613099.4:ENST00000011700.10:ENST00000646411.1:ENST00000543710.5:ENST00000645371.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	22	2	3.97679	4.04933	4.12187	0.0354689	0.0299485	0.142135	0.137535
chr1	14351525	14351624	379684	0	-	0.414141	(0.408,0.44]	chr1	44580	1	INTRON	INTRON	KAZN-AS1	ENSG00000234593.3	ENST00000666654.1:ENST00000661613.1:ENST00000665002.1:ENST00000657979.1:ENST00000447908.3	lncRNA	lncRNA	lncRNA	lncRNA	0	22	2	3.97679	4.04933	4.12187	0.0354689	0.0299485	0.142135	0.137535
chr1	39106916	39107016	74905	0	+	0.44	(0.408,0.44]	chr1	9693	8	INTRON	INTRON	MACF1	ENSG00000127603.32	ENST00000361689.7:ENST00000689911.1:ENST00000567887.5:ENST00000372915.8:ENST00000472385.2:ENST00000693209.1:ENST00000524432.5:ENST00000467673.5:ENST00000688212.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	22	2	3.97679	4.04933	4.12187	0.0354689	0.0299485	0.142135	0.137535
chr1	173995924	173996024	587780	0	-	0.44	(0.408,0.44]	chr1	70758	24	INTRON	INTRON	RC3H1	ENSG00000135870.12	ENST00000367696.7	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.97679	4.04933	4.12187	0.0354689	0.0299485	0.142135	0.137535
chr11	65665543	65665643	4807066	0	+	0.42	(0.408,0.44]	chr11	446974	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RELA-DT	ENSG00000285533.3	ENST00000691526.1:ENST00000648185.2:ENST00000654110.1:ENST00000654031.1:ENST00000689251.1:ENST00000690559.1:ENST00000692111.1:ENST00000690937.1	lncRNA	lncRNA	lncRNA	lncRNA	0	22	2	3.97679	4.04933	4.12187	0.0354689	0.0299485	0.142135	0.137535
chr12	69377365	69377465	5164116	0	+	0.41	(0.408,0.44]	chr12	489118	60	INTRON	INTRON	YEATS4	ENSG00000127337.7	ENST00000548020.5:ENST00000247843.7	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.97679	4.04933	4.12187	0.0354689	0.0299485	0.142135	0.137535
chr14	92161942	92162041	5807248	0	+	0.414141	(0.408,0.44]	chr14	550399	3	UTR3	UTR3:EXON_MRNA	CPSF2	ENSG00000165934.13	ENST00000298875.9	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.97679	4.04933	4.12187	0.0354689	0.0299485	0.142135	0.137535
chr19	315941	316041	7109315	0	-	0.43	(0.408,0.44]	chr19	713786	19	INTRON	INTRON	MIER2	ENSG00000105556.12	ENST00000264819.7	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.97679	4.04933	4.12187	0.0354689	0.0299485	0.142135	0.137535
chr19	15404940	15405039	7147995	0	-	0.424242	(0.408,0.44]	chr19	722120	5	INTRON	INTRON	AKAP8L	ENSG00000011243.19	ENST00000594594.6:ENST00000679638.1:ENST00000595465.6:ENST00000599137.6:ENST00000397410.10:ENST00000609519.5:ENST00000593845.5:ENST00000680649.1:ENST00000596213.6:ENST00000681170.1:ENST00000680703.1:ENST00000680017.1:ENST00000595879.6:ENST00000680303.1:ENST00000679634.1:ENST00000681744.1:ENST00000680803.1:ENST00000681459.1:ENST00000680323.1:ENST00000680774.1:ENST00000680302.1:ENST00000680103.1:ENST00000680642.1:ENST00000681405.1:ENST00000680957.1:ENST00000680865.1:ENST00000680363.1:ENST00000595087.6:ENST00000600065.6:ENST00000594893.5:ENST00000595136.5:ENST00000599488.5:ENST00000596195.5:ENST00000600247.5:ENST00000595067.1:ENST00000601147.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	22	2	3.97679	4.04933	4.12187	0.0354689	0.0299485	0.142135	0.137535
chr2	11779845	11779945	694282	0	+	0.41	(0.408,0.44]	chr2	81351	2	SS5_PROX	SS5_PROX:INTRON	LPIN1	ENSG00000134324.12	ENST00000449576.6:ENST00000425416.6:ENST00000396097.5:ENST00000396099.5:ENST00000396098.5:ENST00000256720.6:ENST00000674199.1:ENST00000404113.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	22	2	3.97679	4.04933	4.12187	0.0354689	0.0299485	0.142135	0.137535
chr2	227347384	227347484	1025547	0	+	0.41	(0.408,0.44]	chr2	109532	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	MFF	ENSG00000168958.20	ENST00000476924.5:ENST00000353339.7:ENST00000354503.10:ENST00000304593.14:ENST00000409565.5:ENST00000409616.5:ENST00000460756.5:ENST00000337110.11:ENST00000524634.5:ENST00000534203.5:ENST00000349901.11:ENST00000392059.5:ENST00000456345.1:ENST00000490857.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	22	2	3.97679	4.04933	4.12187	0.0354689	0.0299485	0.142135	0.137535
chr20	50674743	50674843	7355275	0	-	0.44	(0.408,0.44]	chr20	750067	380	INTRON	INTRON	RIPOR3	ENSG00000042062.13	ENST00000327979.8	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.97679	4.04933	4.12187	0.0354689	0.0299485	0.142135	0.137535
chr21	15828575	15828672	7371096	0	+	0.43299	(0.408,0.44]	chr21	752268	10	INTRON	INTRON	USP25	ENSG00000155313.16	ENST00000400183.7:ENST00000285681.6:ENST00000285679.10:ENST00000351097.9:ENST00000453553.1	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.97679	4.04933	4.12187	0.0354689	0.0299485	0.142135	0.137535
chr22	28530062	28530162	7571436	0	-	0.43	(0.408,0.44]	chr22	774287	871	INTRON	INTRON	TTC28	ENSG00000100154.15	ENST00000397906.7	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.97679	4.04933	4.12187	0.0354689	0.0299485	0.142135	0.137535
chr3	33389631	33389731	1651185	0	-	0.41	(0.408,0.44]	chr3	169319	14	UTR3	UTR3:EXON_MRNA	UBP1	ENSG00000153560.12	ENST00000283629.8:ENST00000492136.1:ENST00000447368.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	22	2	3.97679	4.04933	4.12187	0.0354689	0.0299485	0.142135	0.137535
chr3	57892785	57892883	1437018	0	+	0.418367	(0.408,0.44]	chr3	151751	17	INTRON	INTRON	SLMAP	ENSG00000163681.16	ENST00000295951.7:ENST00000659926.1:ENST00000659705.1:ENST00000671191.1:ENST00000667800.1:ENST00000428312.6:ENST00000664084.1:ENST00000657480.1:ENST00000295952.7:ENST00000383718.7:ENST00000449503.6:ENST00000417128.6:ENST00000465203.5:ENST00000475055.1:ENST00000670768.1:ENST00000416658.5:ENST00000472546.5:ENST00000459654.5:ENST00000494088.6:ENST00000662629.1:ENST00000438794.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	22	2	3.97679	4.04933	4.12187	0.0354689	0.0299485	0.142135	0.137535
chr3	179611381	179611480	1567797	0	+	0.434343	(0.408,0.44]	chr3	162257	32	INTRON	INTRON	NDUFB5	ENSG00000136521.13	ENST00000488002.5:ENST00000611971.4:ENST00000493866.5:ENST00000259037.8:ENST00000472629.5:ENST00000468210.5:ENST00000359944.10:ENST00000477177.1:ENST00000482604.5:ENST00000480374.1:ENST00000496904.5:ENST00000473500.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	22	2	3.97679	4.04933	4.12187	0.0354689	0.0299485	0.142135	0.137535
chr5	55405087	55405169	2356083	0	+	0.439024	(0.408,0.44]	chr5	227248	3	SS3_PROX	SS3_PROX:INTRON	MTREX	ENSG00000039123.16	ENST00000230640.10:ENST00000506750.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	22	2	3.97679	4.04933	4.12187	0.0354689	0.0299485	0.142135	0.137535
chr5	72146803	72146902	2385976	0	+	0.434343	(0.408,0.44]	chr5	230228	300	INTRON	INTRON	MAP1B	ENSG00000131711.15	ENST00000512974.5:ENST00000296755.12:ENST00000513526.6:ENST00000511641.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	22	2	3.97679	4.04933	4.12187	0.0354689	0.0299485	0.142135	0.137535
chr5	83333744	83333844	2409434	0	+	0.42	(0.408,0.44]	chr5	232304	228	INTRON	INTRON	XRCC4	ENSG00000152422.16	ENST00000282268.7:ENST00000338635.10:ENST00000396027.9:ENST00000511817.1	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.97679	4.04933	4.12187	0.0354689	0.0299485	0.142135	0.137535
chr7	72394450	72394550	3550478	0	-	0.42	(0.408,0.44]	chr7	330489	568	INTRON	INTRON	CALN1	ENSG00000183166.11	ENST00000395276.6:ENST00000395275.7:ENST00000431984.5	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.97679	4.04933	4.12187	0.0354689	0.0299485	0.142135	0.137535
chr7	72411557	72411657	3550651	0	-	0.42	(0.408,0.44]	chr7	330498	1	SS5_PROX	SS5_PROX:INTRON	CALN1	ENSG00000183166.11	ENST00000395276.6:ENST00000395275.7:ENST00000431984.5	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.97679	4.04933	4.12187	0.0354689	0.0299485	0.142135	0.137535
chr7	149276202	149276301	3445962	0	+	0.424242	(0.408,0.44]	chr7	321456	86	INTRON	INTRON	ZNF783	ENSG00000204946.10	ENST00000378052.5:ENST00000434415.6:ENST00000476295.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	22	2	3.97679	4.04933	4.12187	0.0354689	0.0299485	0.142135	0.137535
chr8	140613186	140613286	4076342	0	-	0.41	(0.408,0.44]	chr8	370285	74	INTRON	INTRON	AGO2	ENSG00000123908.12	ENST00000220592.10:ENST00000519980.5:ENST00000523609.5:ENST00000517293.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	22	2	3.97679	4.04933	4.12187	0.0354689	0.0299485	0.142135	0.137535
chr9	73161491	73161590	4142477	0	+	0.424242	(0.408,0.44]	chr9	377549	2	INTRON	INTRON	ANXA1	ENSG00000135046.14	ENST00000257497.11:ENST00000456643.5:ENST00000376911.1:ENST00000495713.5:ENST00000489109.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	22	2	3.97679	4.04933	4.12187	0.0354689	0.0299485	0.142135	0.137535
chr9	134064461	134064561	4370947	0	-	0.43	(0.408,0.44]	chr9	402333	86	INTRON	INTRON	BRD3	ENSG00000169925.17	ENST00000303407.12:ENST00000371834.6	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.97679	4.04933	4.12187	0.0354689	0.0299485	0.142135	0.137535
chr16	21625913	21626013	6319210	0	+	0.6	(0.57,1]	chr16	604937	4	INTRON	INTRON	METTL9	ENSG00000197006.15	ENST00000567404.5:ENST00000396014.8:ENST00000358154.8:ENST00000568826.1	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	2.89463	4.049295	5.20396	0.00788262	5.65393e-5	0.076155	0.00613846
chr14	20993385	20993482	5656076	0	+	0.268041	[0,0.28]	chr14	539206	3	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	METTL17	ENSG00000165792.18	ENST00000339374.11:ENST00000382985.8:ENST00000556670.6:ENST00000555533.6:ENST00000555640.6:ENST00000553564.5:ENST00000557550.6:ENST00000555670.1:ENST00000555902.6:ENST00000555390.6:ENST00000554354.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	57	2	3.09587	4.04925	5.00263	0.013055	0.00651565	0.093385	0.0735232
chr15	34426315	34426415	6133152	0	-	0.26	[0,0.28]	chr15	584282	182	INTRON	INTRON	GOLGA8A	ENSG00000175265.18	ENST00000359187.5:ENST00000569781.1:ENST00000565885.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	57	2	3.09587	4.04925	5.00263	0.013055	0.00651565	0.093385	0.0735232
chr20	34430403	34430503	7259793	0	+	0.24	[0,0.28]	chr20	737460	55	INTRON	INTRON	ITCH	ENSG00000078747.16	ENST00000374864.10:ENST00000535650.7:ENST00000670516.1:ENST00000665484.1:ENST00000664852.1:ENST00000660337.1:ENST00000665428.1:ENST00000262650.10:ENST00000662871.1:ENST00000665346.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	57	2	3.09587	4.04925	5.00263	0.013055	0.00651565	0.093385	0.0735232
chr7	131387462	131387562	3417041	0	+	0.24	[0,0.28]	chr7	319199	2	SS5_PROX	SS5_PROX:INTRON	MKLN1	ENSG00000128585.18	ENST00000421797.6:ENST00000416992.6:ENST00000429546.5:ENST00000446815.5:ENST00000494286.5:ENST00000352689.11:ENST00000494785.5:ENST00000458153.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	57	2	3.09587	4.04925	5.00263	0.013055	0.00651565	0.093385	0.0735232
chr5	159186239	159186339	2758953	0	-	0.3	(0.28,0.32]	chr5	260356	38	INTRON	INTRON	RNF145	ENSG00000145860.12	ENST00000424310.7:ENST00000519865.5:ENST00000274542.6:ENST00000611185.4:ENST00000521606.6:ENST00000518802.5:ENST00000520638.1:ENST00000520548.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	62	2	2.18975	4.049189999999999	5.90863	0.0776042	7.60626e-5	0.196285	0.00731806
chr16	18398130	18398228	6455038	0	-	0.510204	(0.476,0.515]	chr16	622259	18	INTRON	INTRON	PKD1P5	ENSG00000254681.6	ENST00000532415.5:ENST00000544578.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	1	46	2	2.94692	4.049175	5.15143	0.00794331	0.00166579	0.0797304	0.0369207
chr14	31006654	31006754	5857676	0	-	0.34	(0.32,0.35]	chr14	556508	423	INTRON	INTRON	STRN3	ENSG00000196792.12	ENST00000355683.9:ENST00000357479.10:ENST00000555358.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	55	2	2.57263	4.049125	5.52562	0.0312297	2.76065e-4	0.13151	0.0147997
chr1	229506748	229506839	653318	0	-	0.406593	(0.378,0.408]	chr1	77411	2	INTRON	INTRON	NUP133	ENSG00000069248.12	ENST00000261396.6:ENST00000366678.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	63	2	2.46345	4.04904	5.63463	0.00827342	3.59226e-4	0.0813266	0.0175484
chr3	129168798	129168895	1815173	0	-	0.57732000000000006	(0.57,1]	chr3	182469	11	UTR3	UTR3:EXON_MRNA	CNBP	ENSG00000169714.17	ENST00000422453.7	protein_coding	protein_coding	protein_coding	protein_coding	3	48	2	2.52633	4.04896	5.57159	0.0018535	9.47307e-6	0.039946	0.00236268
chr1	28741080	28741171	58387	0	+	0.516484	(0.515,0.57]	chr1	7597	3	INTRON	INTRON	YTHDF2	ENSG00000198492.16	ENST00000542507.5:ENST00000474884.5:ENST00000373812.8:ENST00000541996.5:ENST00000478283.5:ENST00000496288.5:ENST00000476976.1:ENST00000475796.5:ENST00000468863.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	44	2	2.96814	4.04894	5.12974	0.00756432	4.54392e-4	0.0749063	0.0192381
chr17	82599036	82599135	6693415	0	+	0.424242	(0.408,0.44]	chr17	654695	2	EXON_MRNA	EXON_MRNA:INTRON	FOXK2	ENSG00000141568.21	ENST00000473637.6:ENST00000335255.10:ENST00000571989.1:ENST00000529652.1:ENST00000624186.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:TEC:processed_transcript	2	103	2	3.93732	4.048875	4.16043	1.0367e-4	5.66588e-5	0.00863144	0.00655354
chr22	40080871	40080971	7517208	0	+	0.59	(0.57,1]	chr22	768084	349	INTRON	INTRON	TNRC6B	ENSG00000100354.21	ENST00000301923.13:ENST00000441751.5:ENST00000402203.5	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	3.42323	4.048830000000001	4.67443	8.58388e-4	8.07515e-4	0.0267428	0.0258804
chr10	45591432	45591532	4607132	0	-	0.44	(0.408,0.44]	chr10	424363	379	INTRON	INTRON	MARCHF8	ENSG00000165406.16	ENST00000319836.7:ENST00000602712.2:ENST00000453980.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	46	2	3.20437	4.04882	4.89327	0.00458906	0.00306596	0.0595107	0.0509893
chr3	8895019	8895118	1609960	0	-	0.434343	(0.408,0.44]	chr3	166142	42	INTRON	INTRON	RAD18	ENSG00000070950.10	ENST00000427329.5:ENST00000264926.7:ENST00000415439.5:ENST00000473069.1:ENST00000429790.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	46	2	3.20437	4.04882	4.89327	0.00458906	0.00306596	0.0595107	0.0509893
chrX	153337409	153337508	7737530	0	+	0.363636	(0.35,0.378]	chrX	791778	3	INTRON	INTRON	ZNF275	ENSG00000063587.15	ENST00000370249.3:ENST00000650114.2:ENST00000370251.3	protein_coding	protein_coding	protein_coding	protein_coding	1	52	2	2.89003	4.04873	5.20743	0.0122391	7.78116e-4	0.0910127	0.0256531
chr10	11990407	11990506	4557252	0	-	0.474747	(0.44,0.476]	chr10	420588	109	INTRON	INTRON	UPF2	ENSG00000151461.20	ENST00000357604.10:ENST00000356352.6:ENST00000397053.6	protein_coding	protein_coding	protein_coding	protein_coding	1	47	2	3.41176	4.0487	4.68564	0.00816201	0.00130987	0.0766625	0.0333932
chr22	16791291	16791391	7546312	0	-	0.33	(0.32,0.35]	chr22	771315	65	INTRON	INTRON	XKR3	ENSG00000172967.8	ENST00000331428.5:ENST00000684488.1	protein_coding	protein_coding	protein_coding	protein_coding	1	55	2	3.03597	4.04868	5.06139	0.00832487	0.00179023	0.0774402	0.0392749
chr20	41591727	41591827	7344278	0	-	0.44	(0.408,0.44]	chr20	748566	272	INTRON	INTRON	CHD6	ENSG00000124177.16	ENST00000373233.8:ENST00000373222.3:ENST00000482596.1:ENST00000440647.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	46	2	2.96007	4.048545	5.13702	0.00753901	0.00202889	0.0773151	0.04086
chr14	58287421	58287520	5904636	0	-	0.363636	(0.35,0.378]	chr14	560829	5	INTRON	INTRON	PSMA3-AS1	ENSG00000257621.9	ENST00000554360.5:ENST00000556002.5:ENST00000555275.5:ENST00000554378.5:ENST00000555707.5:ENST00000556400.5:ENST00000557660.5:ENST00000553657.5:ENST00000555037.1:ENST00000551597.6	lncRNA	lncRNA	lncRNA	lncRNA	1	48	2	3.05136	4.04824	5.04512	0.00578894	0.00393262	0.0684334	0.0548259
chr17	75831918	75832013	6838556	0	-	0.494737	(0.476,0.515]	chr17	675928	7	EXON_MRNA	EXON_MRNA:INTRON	UNC13D	ENSG00000092929.12	ENST00000207549.9:ENST00000412096.6:ENST00000586930.1:ENST00000591563.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	49	2	3.10264	4.048030000000001	4.99342	0.00543163	0.00139274	0.0645052	0.0341261
chr2	61460166	61460266	1130448	0	-	0.29	(0.28,0.32]	chr2	121499	390	INTRON	INTRON	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000453133.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	78	2	2.22069	4.04797	5.87525	0.0243177	8.91612e-5	0.12011	0.00793468
chr16	16501718	16501818	6310879	0	+	0.26	[0,0.28]	chr16	604098	17	INTRON	INTRON	ENSG00000260126	ENSG00000260126.2	ENST00000567465.2	lncRNA	lncRNA	lncRNA	lncRNA	1	67	2	3.24659	4.04795	4.84931	0.00779241	0.00570201	0.0787356	0.0656459
chr5	179701992	179702092	2560716	0	+	0.53	(0.515,0.57]	chr5	244867	1	SS3_PROX	SS3_PROX:INTRON	CANX	ENSG00000127022.16	ENST00000681674.1:ENST00000681712.1:ENST00000681903.1:ENST00000680406.1:ENST00000502296.6:ENST00000504734.5:ENST00000452673.6:ENST00000679719.1:ENST00000679523.1:ENST00000679395.1:ENST00000681504.1:ENST00000679642.1:ENST00000681894.1:ENST00000680504.1:ENST00000681265.1:ENST00000680894.1:ENST00000680812.1:ENST00000680614.1:ENST00000680985.1:ENST00000680837.1:ENST00000680827.1:ENST00000681576.1:ENST00000680984.1:ENST00000680042.1:ENST00000681762.1:ENST00000502498.6:ENST00000681476.1:ENST00000681072.1:ENST00000247461.9:ENST00000513246.6:ENST00000680618.1:ENST00000502673.6:ENST00000680092.1:ENST00000506654.6:ENST00000514032.5:ENST00000681733.1:ENST00000679471.1:ENST00000679527.1:ENST00000680006.1:ENST00000681398.1:ENST00000681431.1:ENST00000680013.1:ENST00000681076.1:ENST00000681168.1:ENST00000509563.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	72	2	2.57713	4.04772	5.51831	0.00176427	6.99834e-5	0.0376652	0.00692586
chr11	9234167	9234267	4908760	0	-	0.38	(0.378,0.408]	chr11	460107	262	INTRON	INTRON	DENND5A	ENSG00000184014.9	ENST00000328194.8:ENST00000681203.1:ENST00000530780.2:ENST00000679999.1:ENST00000680470.1:ENST00000680554.1:ENST00000681425.1:ENST00000679568.1:ENST00000679446.1:ENST00000680294.1:ENST00000680742.1:ENST00000680885.1:ENST00000530044.5:ENST00000526707.5:ENST00000532696.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	68	2	2.51733	4.047575	5.57782	0.00808319	1.18586e-4	0.0766625	0.00930884
chr5	39056318	39056418	2605467	0	-	0.48	(0.476,0.515]	chr5	247896	348	INTRON	INTRON	RICTOR	ENSG00000164327.13	ENST00000357387.8:ENST00000511516.5:ENST00000296782.9:ENST00000510711.5:ENST00000513566.1:ENST00000514735.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	111	2	2.05199	4.047515000000001	6.04304	0.00218744	3.44951e-5	0.0435144	0.00495154
chr14	61750584	61750684	5906164	0	-	0.32	(0.28,0.32]	chr14	561060	3	SS5_PROX	SS5_PROX:INTRON	HIF1A-AS3	ENSG00000258667.2	ENST00000660325.1:ENST00000554254.1	lncRNA	lncRNA	lncRNA	lncRNA	2	73	2	2.1895	4.04746	5.90542	0.0227063	3.92169e-4	0.124921	0.0184748
chr1	173888911	173889011	256955	0	+	0.36	(0.35,0.378]	chr1	30716	29	UTR3	UTR3:EXON_MRNA	ZBTB37	ENSG00000185278.16	ENST00000367701.10	protein_coding	protein_coding	protein_coding	protein_coding	1	48	2	3.10863	4.04712	4.98561	0.00474226	0.00470896	0.0631419	0.0600445
chr14	58259277	58259375	5731053	0	+	0.377551	(0.35,0.378]	chr14	544100	9	INTRON	INTRON	PSMA3	ENSG00000100567.13	ENST00000216455.9:ENST00000554812.5:ENST00000557087.5:ENST00000555931.5:ENST00000412908.6:ENST00000555743.1:ENST00000557508.5:ENST00000553677.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	48	2	2.99173	4.046995	5.10226	0.00713365	0.00327038	0.0756118	0.0508595
chr6	34310977	34311077	3083956	0	-	0.34	(0.32,0.35]	chr6	288627	149	INTRON	INTRON	NUDT3:RPS10-NUDT3	ENSG00000272325.2:ENSG00000270800.3	ENST00000607016.2:ENST00000639725.1:ENST00000639877.1:ENST00000605528.2	protein_coding	protein_coding	protein_coding	protein_coding	2	67	2	2.67068	4.046865	5.42305	0.00406276	0.00149027	0.0578984	0.035
chr10	3776683	3776782	4543111	0	-	0.262626	[0,0.28]	chr10	419496	8	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	KLF6	ENSG00000067082.15	ENST00000497571.6:ENST00000461124.1:ENST00000542957.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	85	2	2.17149	4.046695	5.9219	0.0308079	1.62133e-4	0.13151	0.0109774
chr2	127310459	127310559	1223021	0	-	0.49	(0.476,0.515]	chr2	130207	13	INTRON	INTRON	MAP3K2	ENSG00000169967.17	ENST00000682094.1:ENST00000409947.5:ENST00000344908.9	protein_coding	protein_coding	protein_coding	protein_coding	1	47	2	3.40003	4.046615	4.6932	0.00753088	0.00139193	0.074841	0.0341261
chr5	88293461	88293560	2412308	0	+	0.494949	(0.476,0.515]	chr5	232539	22	EXON_LNCRNA	EXON_LNCRNA:INTRON	TMEM161B-DT	ENSG00000247828.9	ENST00000504922.6:ENST00000658478.1:ENST00000501869.7:ENST00000654762.1:ENST00000658094.1:ENST00000661627.1:ENST00000664546.1:ENST00000689901.1:ENST00000653918.1:ENST00000668471.1:ENST00000671394.1:ENST00000670451.1:ENST00000670873.1:ENST00000501715.6:ENST00000657972.2:ENST00000684909.1:ENST00000659215.1:ENST00000513694.2:ENST00000510087.6:ENST00000657617.1:ENST00000686930.1:ENST00000653183.1	lncRNA	lncRNA	lncRNA	lncRNA	1	47	2	3.40003	4.046615	4.6932	0.00753088	0.00139193	0.074841	0.0341261
chr8	38242051	38242139	3735632	0	+	0.25	[0,0.28]	chr8	347112	2	EXON_LNCRNA	EXON_LNCRNA:SS3_PROX:INTRON	DDHD2	ENSG00000085788.14	ENST00000397166.7:ENST00000532222.5:ENST00000520272.6:ENST00000527415.5:ENST00000532106.1:ENST00000528888.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	121	2	2.23099	4.04632	5.86165	0.00319102	0.00101071	0.0520345	0.0291154
chr11	479838	479931	4719202	0	+	0.344086	(0.32,0.35]	chr11	436023	3	SS3_PROX	SS3_PROX:INTRON	PTDSS2	ENSG00000174915.12	ENST00000532614.5:ENST00000308020.6:ENST00000531520.5:ENST00000526878.5:ENST00000530087.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	50	2	3.13277	4.04624	4.95971	0.00663522	0.00458313	0.0703181	0.0622676
chr16	81025651	81025744	6404013	0	+	0.344086	(0.32,0.35]	chr16	614906	5	INTRON	INTRON	CENPN	ENSG00000166451.14	ENST00000439957.7:ENST00000393335.7:ENST00000305850.10:ENST00000428963.6	protein_coding	protein_coding	protein_coding	protein_coding	1	50	2	3.13277	4.04624	4.95971	0.00663522	0.00458313	0.0703181	0.0622676
chr18	13028863	13028962	6876954	0	+	0.323232	(0.32,0.35]	chr18	681391	93	INTRON	INTRON	CEP192	ENSG00000101639.19	ENST00000325971.12:ENST00000506447.5:ENST00000589596.5:ENST00000513432.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	51	2	3.3273	4.046155000000001	4.76501	0.0114287	0.00218894	0.0886611	0.0435144
chr17	5427479	5427578	6551803	0	+	0.333333	(0.32,0.35]	chr17	636016	13	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	RPAIN	ENSG00000129197.15	ENST00000573577.5:ENST00000571558.5:ENST00000575599.5:ENST00000571043.5:ENST00000571613.5:ENST00000539417.6:ENST00000381208.9:ENST00000536255.6:ENST00000327154.10:ENST00000381209.8:ENST00000575112.5:ENST00000570883.5:ENST00000573126.1:ENST00000405578.8:ENST00000574003.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	50	2	2.90786	4.046005	5.18415	0.00993008	0.00333629	0.0877296	0.0512081
chr6	52274609	52274705	3105805	0	-	0.5	(0.476,0.515]	chr6	290789	3	INTRON	INTRON	MCM3	ENSG00000112118.20	ENST00000616552.4:ENST00000229854.12:ENST00000596288.7:ENST00000419835.8	protein_coding	protein_coding	protein_coding	protein_coding	3	136	2	3.75864	4.046005	4.33337	2.22994e-5	1.10019e-5	0.00385749	0.00244462
chr6	140220863	140220963	2968664	0	+	0.48	(0.476,0.515]	chr6	279015	718	INTRON	INTRON	ENSG00000288714	ENSG00000288714.1	ENST00000683950.1	lncRNA	lncRNA	lncRNA	lncRNA	1	47	2	2.73205	4.046	5.35995	0.0159328	7.54256e-4	0.109464	0.0251179
chr11	3709653	3709752	4894273	0	-	0.333333	(0.32,0.35]	chr11	458814	20	INTRON	INTRON	NUP98	ENSG00000110713.17	ENST00000359171.8:ENST00000324932.12:ENST00000650171.1:ENST00000355260.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	89	2	2.25069	4.04598	5.84127	0.00934678	6.29724e-5	0.0817766	0.00658818
chrX	65733878	65733977	7671755	0	+	0.50505	(0.476,0.515]	chrX	785182	2	INTRON	INTRON	MSN	ENSG00000147065.17	ENST00000360270.7	protein_coding	protein_coding	protein_coding	protein_coding	2	101	2	3.9575	4.04592	4.13434	9.49972e-5	5.88252e-5	0.00818267	0.00669884
chr11	61344469	61344566	4796153	0	+	0.546392	(0.515,0.57]	chr11	444185	2	SS5_PROX	SS5_PROX:INTRON	TKFC	ENSG00000149476.16	ENST00000394900.8:ENST00000529479.5:ENST00000528061.1:ENST00000534084.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	42	2	3.25412	4.04588	4.83764	0.00279527	0.00224554	0.0469265	0.0435144
chr3	47129860	47129960	1681263	0	-	0.33	(0.32,0.35]	chr3	171624	28	INTRON	INTRON	SETD2	ENSG00000181555.22	ENST00000691544.1:ENST00000638947.2:ENST00000409792.4:ENST00000412450.1	protein_coding	protein_coding	protein_coding	protein_coding	4	93	2	1.95408	4.04583	6.13758	0.0124054	8.35107e-5	0.0973643	0.00815123
chr12	91395315	91395415	5383165	0	-	0.56	(0.515,0.57]	chr12	513463	250	INTRON	INTRON	ENSG00000289605	ENSG00000289605.1	ENST00000685093.1	lncRNA	lncRNA	lncRNA	lncRNA	1	47	2	3.49496	4.04563	4.5963	0.00370287	9.61701e-4	0.0561162	0.0282401
chr10	26794939	26795039	4583839	0	-	0.54	(0.515,0.57]	chr10	422397	173	INTRON	INTRON	ABI1	ENSG00000136754.18	ENST00000376138.7:ENST00000376166.5:ENST00000376160.5:ENST00000376139.6:ENST00000376142.6:ENST00000359188.8:ENST00000376170.8:ENST00000536334.5:ENST00000490841.6:ENST00000376137.8:ENST00000376140.4:ENST00000346832.10:ENST00000473481.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	42	2	2.98677	4.045624999999999	5.10448	0.00632549	0.0010345	0.0722266	0.029231300000000002
chr15	101289613	101289713	6269988	0	-	0.54	(0.515,0.57]	chr15	598013	4	SS5_PROX	SS5_PROX:INTRON	SNRPA1	ENSG00000131876.18	ENST00000254193.11:ENST00000558036.5:ENST00000559309.5:ENST00000394082.8:ENST00000540017.6:ENST00000560496.5:ENST00000560383.5:ENST00000558059.5:ENST00000560987.5:ENST00000560856.5:ENST00000558020.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	42	2	2.98677	4.045624999999999	5.10448	0.00632549	0.0010345	0.0722266	0.029231300000000002
chr2	127312655	127312755	1223043	0	-	0.54	(0.515,0.57]	chr2	130207	35	INTRON	INTRON	MAP3K2	ENSG00000169967.17	ENST00000682094.1:ENST00000409947.5:ENST00000344908.9	protein_coding	protein_coding	protein_coding	protein_coding	1	42	2	2.98677	4.045624999999999	5.10448	0.00632549	0.0010345	0.0722266	0.029231300000000002
chr4	119445027	119445127	2230611	0	-	0.39	(0.378,0.408]	chr4	218526	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GTF2IP12	ENSG00000283050.3	ENST00000634317.1:ENST00000456547.2:ENST00000650915.1:ENST00000652344.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	1	53	2	3.32016	4.045605	4.77105	0.00330823	0.00268328	0.0527031	0.0464781
chr17	16425502	16425598	6562511	0	+	0.427083	(0.408,0.44]	chr17	637861	14	INTRON	INTRON	TRPV2	ENSG00000187688.15	ENST00000338560.12	protein_coding	protein_coding	protein_coding	protein_coding	1	47	2	2.74518	4.04533	5.34548	0.0152229	9.40657e-4	0.108535	0.0280776
chr2	101005271	101005369	835669	0	+	0.438776	(0.408,0.44]	chr2	93828	11	UTR3	UTR3:EXON_MRNA:INTRON	RPL31	ENSG00000071082.11	ENST00000409028.8:ENST00000264258.8:ENST00000409038.5:ENST00000409650.5:ENST00000409733.5:ENST00000409320.7:ENST00000419276.1:ENST00000409711.1:ENST00000456292.5:ENST00000441435.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	47	2	2.74518	4.04533	5.34548	0.0152229	9.40657e-4	0.108535	0.0280776
chr4	67480673	67480773	2152849	0	-	0.34	(0.32,0.35]	chr4	211913	53	INTRON	INTRON	CENPC	ENSG00000145241.11	ENST00000273853.11:ENST00000513216.5:ENST00000506882.5:ENST00000515140.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	56	2	3.72276	4.045154999999999	4.36755	0.0300552	3.96144e-4	0.129138	0.0178616
chr15	44515044	44515144	6015238	0	+	0.47	(0.44,0.476]	chr15	572982	2	SS5_PROX	SS5_PROX:INTRON	CTDSPL2	ENSG00000137770.14	ENST00000260327.9:ENST00000558966.5:ENST00000558373.5:ENST00000560620.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	46	2	3.25801	4.045015	4.83202	0.00525002	0.00248185	0.0633615	0.0460771
chr2	241251774	241251872	1347905	0	-	0.44898	(0.44,0.476]	chr2	141567	9	INTRON	INTRON	HDLBP	ENSG00000115677.18	ENST00000391975.5:ENST00000427183.6:ENST00000310931.10:ENST00000391976.6:ENST00000373292.8:ENST00000498595.5:ENST00000477477.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	46	2	3.25801	4.045015	4.83202	0.00525002	0.00248185	0.0633615	0.0460771
chr7	135406218	135406317	3647914	0	-	0.454545	(0.44,0.476]	chr7	339149	76	INTRON	INTRON	CNOT4	ENSG00000080802.20	ENST00000541284.6:ENST00000451834.5:ENST00000423368.6:ENST00000361528.8:ENST00000414802.5:ENST00000428680.6:ENST00000315544.6	protein_coding	protein_coding	protein_coding	protein_coding	1	46	2	3.25801	4.045015	4.83202	0.00525002	0.00248185	0.0633615	0.0460771
chr16	85657904	85658004	6416426	0	+	0.38	(0.378,0.408]	chr16	615520	3	SS5_PROX	SS5_PROX:INTRON	GSE1	ENSG00000131149.19	ENST00000405402.6:ENST00000253458.12:ENST00000393243.5:ENST00000412692.5	protein_coding	protein_coding	protein_coding	protein_coding	3	75	2	2.53602	4.04495	5.55388	0.0020933	5.01023e-4	0.0424943	0.0206993
chr2	28903715	28903814	725267	0	+	0.454545	(0.44,0.476]	chr2	83787	12	INTRON	INTRON	WDR43	ENSG00000163811.12	ENST00000407426.8:ENST00000440983.1	protein_coding	protein_coding	protein_coding	protein_coding	2	61	2	2.59888	4.044925	5.49097	0.00487719	4.8612e-4	0.0640618	0.0203841
chr2	69350583	69350683	1146930	0	-	0.4	(0.378,0.408]	chr2	122476	4	SS3_PROX	SS3_PROX:INTRON	GFPT1	ENSG00000198380.13	ENST00000361060.5:ENST00000357308.9:ENST00000674507.1:ENST00000674438.1	protein_coding	protein_coding	protein_coding	protein_coding	1	51	2	2.60296	4.04484	5.48672	0.0267851	1.83012e-4	0.123349	0.01176
chrX	149953743	149953842	7730425	0	+	0.474747	(0.44,0.476]	chrX	791129	8	INTRON	INTRON	EOLA2-DT	ENSG00000235703.7	ENST00000670799.1:ENST00000654890.1:ENST00000449111.5:ENST00000444489.5:ENST00000669126.1:ENST00000452864.2:ENST00000671125.1	lncRNA	lncRNA	lncRNA	lncRNA	1	46	2	2.89047	4.044635	5.1988	0.00955699	0.00151532	0.0863913	0.0352794
chr14	27631137	27631237	5849163	0	-	0.38	(0.378,0.408]	chr14	556260	3086	INTRON	INTRON	ENSG00000258932	ENSG00000258932.5	ENST00000553392.5:ENST00000554904.5:ENST00000556890.1:ENST00000555797.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	1	48	2	2.71183	4.0446100000000005	5.37739	0.0170789	0.0010014	0.110899	0.0288906
chr12	45758302	45758401	5123002	0	+	0.333333	(0.32,0.35]	chr12	483303	24	INTRON	INTRON	ARID2	ENSG00000189079.17	ENST00000334344.11:ENST00000426776.5:ENST00000422737.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	67	2	2.71053	4.04443	5.37833	0.00346747	0.00174321	0.0539802	0.0375363
chr17	57412528	57412627	6634318	0	+	0.383838	(0.378,0.408]	chr17	648045	51	INTRON	INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000674961.1:ENST00000582453.5:ENST00000675656.1:ENST00000322684.7:ENST00000579590.5:ENST00000442934.6:ENST00000579180.2:ENST00000579205.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	47	2	3.27907	4.0443750000000005	4.80968	0.00679828	0.0023379	0.0711802	0.0442989
chr5	177427694	177427793	2555862	0	+	0.525253	(0.515,0.57]	chr5	244175	4	INTRON	INTRON	GRK6	ENSG00000198055.11	ENST00000502598.5:ENST00000506296.5:ENST00000511244.5:ENST00000355472.10:ENST00000507633.5:ENST00000393576.7:ENST00000528793.5:ENST00000355958.9:ENST00000512684.1	protein_coding	protein_coding	protein_coding	protein_coding	1	44	2	2.65834	4.044264999999999	5.43019	0.0187418	2.60422e-4	0.117523	0.0148796
chr14	96801069	96801169	5810891	0	+	0.36	(0.35,0.378]	chr14	551001	9	INTRON	INTRON	VRK1	ENSG00000100749.9	ENST00000553683.2:ENST00000680538.1:ENST00000555351.2:ENST00000681195.1:ENST00000681524.1:ENST00000680084.1:ENST00000679533.1:ENST00000681598.1:ENST00000679727.1:ENST00000679758.1:ENST00000680509.1:ENST00000557222.6:ENST00000679977.1:ENST00000680387.1:ENST00000680335.1:ENST00000680683.1:ENST00000681474.1:ENST00000216639.8:ENST00000681363.1:ENST00000681538.1:ENST00000679736.1:ENST00000681176.1:ENST00000680922.1:ENST00000679903.1:ENST00000557352.2:ENST00000681101.1:ENST00000681419.1:ENST00000680348.1:ENST00000679941.1:ENST00000679452.1:ENST00000680849.1:ENST00000679770.1:ENST00000681493.1:ENST00000681778.1:ENST00000680993.1:ENST00000681355.1:ENST00000681695.1:ENST00000681344.1:ENST00000680007.1:ENST00000679918.1:ENST00000681785.1:ENST00000679816.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	70	2	2.36677	4.0441400000000005	5.72151	0.0139343	7.69755e-5	0.0957526	0.00735438
chr15	48775023	48775123	6166316	0	-	0.31	(0.28,0.32]	chr15	587640	16	INTRON	INTRON	CEP152	ENSG00000103995.14	ENST00000380950.7:ENST00000399334.7:ENST00000325747.9:ENST00000560322.5	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay	1	53	2	3.22074	4.0440249999999995	4.86731	0.0116253	0.00362783	0.0889104	0.055479
chr6	147687415	147687514	2990870	0	+	0.434343	(0.408,0.44]	chr6	280163	109	INTRON	INTRON	ENSG00000227681	ENSG00000227681.5	ENST00000427015.1:ENST00000432506.5:ENST00000442094.5	lncRNA	lncRNA	lncRNA	lncRNA	3	81	2	2.45395	4.043945	5.63394	0.00366321	7.78928e-5	0.0535094	0.00735438
chr17	30141514	30141614	6587637	0	+	0.24	[0,0.28]	chr17	640563	134	INTRON	INTRON	NSRP1	ENSG00000126653.18	ENST00000540900.7:ENST00000612959.4:ENST00000247026.10:ENST00000577289.6:ENST00000584154.5:ENST00000394826.8:ENST00000475652.5:ENST00000584317.5:ENST00000583301.5:ENST00000585881.5:ENST00000467446.6:ENST00000580103.6:ENST00000581048.5:ENST00000588614.1:ENST00000589608.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	77	2	2.28885	4.0437449999999995	5.79864	0.0181093	0.00125481	0.114853	0.0323608
chr5	69203370	69203470	2380245	0	+	0.54	(0.515,0.57]	chr5	229228	4	SS5_PROX	SS5_PROX:INTRON	CENPH	ENSG00000153044.10	ENST00000515001.5:ENST00000283006.7:ENST00000502689.1	protein_coding	protein_coding	protein_coding	protein_coding	1	45	2	2.56306	4.043655	5.52425	0.0247751	1.68822e-4	0.131869	0.0119215
chr10	11542346	11542445	4555370	0	-	0.363636	(0.35,0.378]	chr10	420447	102	INTRON	INTRON	USP6NL	ENSG00000148429.15	ENST00000609104.6:ENST00000379237.6	protein_coding	protein_coding	protein_coding	protein_coding	1	48	2	3.16371	4.04363	4.92355	0.00573514	0.00383956	0.0657377	0.0562562
chr17	30773624	30773722	6590231	0	+	0.377551	(0.35,0.378]	chr17	640888	33	INTRON	INTRON	SUZ12P1	ENSG00000264538.7	ENST00000578195.6:ENST00000582329.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	1	48	2	3.16371	4.04363	4.92355	0.00573514	0.00383956	0.0657377	0.0562562
chr1	213004232	213004332	634976	0	-	0.32	(0.28,0.32]	chr1	75009	21	INTRON	INTRON	ANGEL2	ENSG00000174606.14	ENST00000366962.8:ENST00000360506.6:ENST00000535388.2	protein_coding	protein_coding	protein_coding	protein_coding	1	53	2	2.73945	4.04355	5.34765	0.017681	0.00287138	0.11319	0.0474836
chr5	39010887	39010986	2605012	0	-	0.373737	(0.35,0.378]	chr5	247890	69	INTRON	INTRON	RICTOR	ENSG00000164327.13	ENST00000357387.8:ENST00000511516.5:ENST00000296782.9:ENST00000510711.5:ENST00000513566.1:ENST00000514735.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	77	2	2.39519	4.04354	5.69189	0.00401951	3.71413e-4	0.0578189	0.0178698
chr1	26854330	26854428	52501	0	+	0.479592	(0.476,0.515]	chr1	6728	6	UTR3	UTR3:EXON_MRNA:INTRON	ZDHHC18	ENSG00000204160.12	ENST00000374142.9:ENST00000488397.3	protein_coding	protein_coding	protein_coding	protein_coding	2	68	2	2.90668	4.043535	5.18039	0.00164243	6.58744e-4	0.0369207	0.0232396
chr3	20067938	20068037	1376702	0	+	0.363636	(0.35,0.378]	chr3	145087	268	INTRON	INTRON	KAT2B	ENSG00000114166.8	ENST00000263754.5:ENST00000426228.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	48	2	2.92952	4.043375	5.15723	0.00881187	0.00272706	0.084878	0.0467523
chr4	13379204	13379303	2107799	0	-	0.373737	(0.35,0.378]	chr4	208554	22	INTRON	INTRON	RAB28	ENSG00000157869.16	ENST00000511649.5:ENST00000330852.10:ENST00000288723.9:ENST00000508274.5:ENST00000338176.8:ENST00000630951.1:ENST00000504644.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	48	2	2.92952	4.043375	5.15723	0.00881187	0.00272706	0.084878	0.0467523
chr11	78509087	78509187	5001153	0	-	0.34	(0.32,0.35]	chr11	472552	155	INTRON	INTRON	NARS2	ENSG00000137513.11	ENST00000695341.1:ENST00000281038.10:ENST00000695343.1:ENST00000695342.1:ENST00000695344.1:ENST00000529771.2:ENST00000695345.1:ENST00000695115.1:ENST00000695348.1:ENST00000695114.1:ENST00000695346.1:ENST00000695347.1:ENST00000695349.1:ENST00000695116.1:ENST00000695352.1:ENST00000695353.1:ENST00000695351.1:ENST00000695350.1:ENST00000695354.1:ENST00000695355.1:ENST00000528850.5:ENST00000695357.1:ENST00000695366.1:ENST00000695356.1:ENST00000695358.1:ENST00000695359.1:ENST00000695360.1:ENST00000695361.1:ENST00000695362.1:ENST00000525345.6:ENST00000529880.1:ENST00000695364.1:ENST00000695365.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	23	2	3.91486	4.043335	4.17181	0.04531	0.0450361	0.163255	0.149888
chr13	106555348	106555448	5648803	0	-	0.35	(0.32,0.35]	chr13	538146	108	INTRON	INTRON	ARGLU1	ENSG00000134884.15	ENST00000400198.8:ENST00000472226.2:ENST00000375926.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	23	2	3.91486	4.043335	4.17181	0.04531	0.0450361	0.163255	0.149888
chr13	114121034	114121134	5654756	0	-	0.33	(0.32,0.35]	chr13	538953	468	INTRON	INTRON	RASA3	ENSG00000185989.11	ENST00000334062.8	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	3.91486	4.043335	4.17181	0.04531	0.0450361	0.163255	0.149888
chr16	18831261	18831359	6457081	0	-	0.336735	(0.32,0.35]	chr16	622631	5	INTRON	INTRON	SMG1	ENSG00000157106.18	ENST00000446231.7:ENST00000565324.5	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	3.91486	4.043335	4.17181	0.04531	0.0450361	0.163255	0.149888
chr17	60372492	60372592	6805679	0	-	0.33	(0.32,0.35]	chr17	672366	265	INTRON	INTRON	USP32	ENSG00000170832.13	ENST00000300896.9:ENST00000590133.5:ENST00000589335.5:ENST00000393003.7:ENST00000588898.1:ENST00000589761.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	23	2	3.91486	4.043335	4.17181	0.04531	0.0450361	0.163255	0.149888
chr17	77413917	77414016	6680785	0	+	0.323232	(0.32,0.35]	chr17	652538	84	INTRON	INTRON	SEPTIN9	ENSG00000184640.20	ENST00000591198.5:ENST00000427177.6:ENST00000431235.6:ENST00000449803.6:ENST00000329047.13:ENST00000588575.1:ENST00000590294.6:ENST00000588690.6:ENST00000423034.6:ENST00000590059.5:ENST00000427674.6:ENST00000592420.1:ENST00000585930.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	23	2	3.91486	4.043335	4.17181	0.04531	0.0450361	0.163255	0.149888
chr2	24356904	24357004	1082948	0	-	0.34	(0.32,0.35]	chr2	115714	284	INTRON	INTRON	ITSN2	ENSG00000198399.16	ENST00000355123.9:ENST00000361999.7:ENST00000406921.7:ENST00000412011.5:ENST00000443927.5:ENST00000407704.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	23	2	3.91486	4.043335	4.17181	0.04531	0.0450361	0.163255	0.149888
chr5	180254473	180254571	2782662	0	-	0.326531	(0.32,0.35]	chr5	262721	4	INTRON	INTRON	MAPK9	ENSG00000050748.18	ENST00000452135.7:ENST00000343111.10:ENST00000455781.5:ENST00000393360.7:ENST00000347470.8:ENST00000397072.7:ENST00000393362.8:ENST00000524170.5:ENST00000425491.6:ENST00000539014.5:ENST00000523135.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	23	2	3.91486	4.043335	4.17181	0.04531	0.0450361	0.163255	0.149888
chr6	99463315	99463413	3166464	0	-	0.326531	(0.32,0.35]	chr6	295372	1	INTRON	INTRON	USP45	ENSG00000123552.18	ENST00000500704.7:ENST00000496518.6:ENST00000327681.10:ENST00000369233.6:ENST00000513344.1:ENST00000506871.5:ENST00000511403.5:ENST00000496090.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	23	2	3.91486	4.043335	4.17181	0.04531	0.0450361	0.163255	0.149888
chr6	99514653	99514753	3166996	0	-	0.34	(0.32,0.35]	chr6	295454	4	SS5_PROX	SS5_PROX:INTRON	USP45	ENSG00000123552.18	ENST00000500704.7:ENST00000327681.10:ENST00000369233.6:ENST00000329966.10:ENST00000472914.6:ENST00000369232.2:ENST00000508908.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	23	2	3.91486	4.043335	4.17181	0.04531	0.0450361	0.163255	0.149888
chr6	140404990	140405090	2970506	0	+	0.34	(0.32,0.35]	chr6	279019	895	INTRON	INTRON	ENSG00000288714	ENSG00000288714.1	ENST00000684511.1	lncRNA	lncRNA	lncRNA	lncRNA	0	23	2	3.91486	4.043335	4.17181	0.04531	0.0450361	0.163255	0.149888
chr6	170622006	170622106	3037671	0	+	0.35	(0.32,0.35]	chr6	283173	60	INTRON	INTRON	ENSG00000287411:ENSG00000230423	ENSG00000287411.1:ENSG00000230423.3	ENST00000667394.1:ENST00000656791.1	lncRNA	lncRNA	lncRNA	lncRNA	0	23	2	3.91486	4.043335	4.17181	0.04531	0.0450361	0.163255	0.149888
chr7	103349859	103349958	3373654	0	+	0.383838	(0.378,0.408]	chr7	315781	12	INTRON	INTRON	PSMC2	ENSG00000161057.13	ENST00000678493.1:ENST00000457587.5:ENST00000679205.1:ENST00000679341.1:ENST00000435765.5:ENST00000679250.1:ENST00000679046.1:ENST00000292644.5:ENST00000677281.1:ENST00000425206.6:ENST00000678488.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	143	2	3.14435	4.043335	4.94232	6.4029e-4	2.03854e-7	0.0231685	2.13443e-4
chrX	98732283	98732383	7692290	0	+	0.33	(0.32,0.35]	chrX	787209	3	INTRON	INTRON	ENSG00000281566	ENSG00000281566.3	ENST00000649508.1:ENST00000626665.3:ENST00000627700.2	lncRNA	lncRNA	lncRNA	lncRNA	0	23	2	3.91486	4.043335	4.17181	0.04531	0.0450361	0.163255	0.149888
chrX	118413351	118413451	7707791	0	+	0.33	(0.32,0.35]	chrX	788600	20	INTRON	INTRON	WDR44	ENSG00000131725.14	ENST00000371822.9:ENST00000254029.8:ENST00000371825.7:ENST00000371848.3	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	3.91486	4.043335	4.17181	0.04531	0.0450361	0.163255	0.149888
chr1	246077554	246077654	676407	0	-	0.28	[0,0.28]	chr1	79717	241	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000391836.3:ENST00000464398.1:ENST00000453676.5:ENST00000462422.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	58	2	3.2621000000000002	4.043215	4.82433	0.0200334	0.00367113	0.109608	0.056059199999999997
chr7	148861803	148861903	3670538	0	-	0.25	[0,0.28]	chr7	340628	141	INTRON	INTRON	EZH2	ENSG00000106462.12	ENST00000683292.1:ENST00000320356.7:ENST00000492143.5:ENST00000478654.5:ENST00000350995.6:ENST00000460911.5:ENST00000683744.1:ENST00000682317.1:ENST00000682263.1:ENST00000684300.1:ENST00000476773.5:ENST00000483967.5:ENST00000498186.5:ENST00000483012.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	58	2	3.2621000000000002	4.043215	4.82433	0.0200334	0.00367113	0.109608	0.056059199999999997
chr17	61818949	61819049	6808488	0	-	0.52	(0.515,0.57]	chr17	672605	98	INTRON	INTRON	BRIP1	ENSG00000136492.10	ENST00000259008.7:ENST00000682755.1:ENST00000682453.1:ENST00000683039.1:ENST00000682989.1:ENST00000682589.1:ENST00000683235.1:ENST00000682477.1:ENST00000684584.1:ENST00000577598.5:ENST00000682066.1:ENST00000584322.2:ENST00000683381.1:ENST00000579028.2:ENST00000682611.1:ENST00000683692.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	44	2	3.09002	4.043184999999999	4.99635	0.00491099	8.06602e-4	0.0609494	0.0258804
chr19	45671857	45671957	7080463	0	+	0.56	(0.515,0.57]	chr19	708299	1	SS5_PROX	SS5_PROX:INTRON	GIPR	ENSG00000010310.9	ENST00000590918.6:ENST00000652180.1:ENST00000263281.7:ENST00000585889.1:ENST00000304207.12	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	44	2	3.09002	4.043184999999999	4.99635	0.00491099	8.06602e-4	0.0609494	0.0258804
chr10	73065952	73066052	4647532	0	-	0.25	[0,0.28]	chr10	427530	120	INTRON	INTRON	P4HA1	ENSG00000122884.13	ENST00000394890.7:ENST00000307116.6:ENST00000373008.6:ENST00000440381.5:ENST00000263556.3	protein_coding	protein_coding	protein_coding	protein_coding	3	96	2	2.65205	4.043165	5.43428	0.00400834	0.00186389	0.0551303	0.0399675
chr4	159262881	159262981	2075107	0	+	0.31	(0.28,0.32]	chr4	205218	187	INTRON	INTRON	RAPGEF2	ENSG00000109756.10	ENST00000644474.1:ENST00000691494.1:ENST00000505478.5:ENST00000504604.5:ENST00000644902.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	54	2	3.35108	4.04291	4.73474	0.0162835	0.00221345	0.101453	0.0435144
chr1	33026752	33026851	416756	0	-	0.484848	(0.476,0.515]	chr1	50351	18	INTRON	INTRON	AK2	ENSG00000004455.18	ENST00000373449.7:ENST00000672715.1:ENST00000695598.1:ENST00000550338.6:ENST00000695599.1:ENST00000354858.11:ENST00000695600.1:ENST00000695601.1:ENST00000491241.2:ENST00000695602.1:ENST00000469238.2:ENST00000695603.1:ENST00000695604.1:ENST00000672308.1:ENST00000548033.5:ENST00000467905.5:ENST00000480134.5:ENST00000695605.1:ENST00000673291.1:ENST00000487289.1:ENST00000548559.1:ENST00000551979.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	85	2	1.95469	4.04284	6.13099	0.0115753	2.19436e-5	0.0962115	0.00381314
chr10	42545356	42545456	4603781	0	-	0.29	(0.28,0.32]	chr10	424114	193	INTRON	INTRON	ZNF37BP	ENSG00000234420.8	ENST00000452075.7:ENST00000692055.1:ENST00000689225.1:ENST00000686311.1:ENST00000686673.1:ENST00000688789.1:ENST00000690905.1:ENST00000435805.7:ENST00000687308.1:ENST00000692559.1:ENST00000690442.1:ENST00000473592.1:ENST00000691808.1:ENST00000692594.1:ENST00000691366.1:ENST00000689409.1:ENST00000685241.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	2	80	2	2.68602	4.04282	5.39962	0.0055712	7.06751e-4	0.0649112	0.0241881
chr19	21766834	21766926	7159299	0	-	0.576087	(0.57,1]	chr19	723743	7	INTRON	INTRON	ZNF100	ENSG00000197020.12	ENST00000358296.11:ENST00000598026.1	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	3.48337	4.04249	4.60161	0.00142229	6.20854e-4	0.0340865	0.0223951
chr2	196162861	196162961	1301880	0	-	0.41	(0.408,0.44]	chr2	136270	2	SS5_PROX	SS5_PROX:INTRON	STK17B	ENSG00000081320.11	ENST00000263955.9:ENST00000409228.5:ENST00000420683.1	protein_coding	protein_coding	protein_coding	protein_coding	1	46	2	3.25948	4.04239	4.8253	0.0056738	0.00246454	0.0653997	0.0459102
chr7	151502362	151502461	3674750	0	-	0.424242	(0.408,0.44]	chr7	341207	38	INTRON	INTRON	RHEB	ENSG00000106615.10	ENST00000262187.10:ENST00000472642.5:ENST00000478470.5:ENST00000496004.5:ENST00000470370.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	46	2	3.25948	4.04239	4.8253	0.0056738	0.00246454	0.0653997	0.0459102
chr2	71371583	71371681	807420	0	+	0.367347	(0.35,0.378]	chr2	90193	12	INTRON	INTRON	ZNF638	ENSG00000075292.19	ENST00000410075.5:ENST00000409544.5:ENST00000264447.9:ENST00000601581.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	49	2	3.36514	4.042335	4.71953	0.0103314	0.00173699	0.0850389	0.03851
chr15	74937387	74937487	6223009	0	-	0.44	(0.408,0.44]	chr15	594285	3	SS5_PROX	SS5_PROX:INTRON	COX5A	ENSG00000178741.12	ENST00000322347.11:ENST00000567270.5:ENST00000562233.5:ENST00000568783.5:ENST00000568517.1:ENST00000564811.1	protein_coding	protein_coding	protein_coding	protein_coding	2	61	2	2.60048	4.04232	5.48416	0.00484324	5.43528e-4	0.0640618	0.0215026
chr1	213131787	213131887	311512	0	+	0.29	(0.28,0.32]	chr1	35945	15	INTRON	INTRON	RPS6KC1	ENSG00000136643.12	ENST00000615329.4:ENST00000543354.5:ENST00000614059.4:ENST00000543470.5:ENST00000366960.8:ENST00000366959.4:ENST00000490299.5:ENST00000468069.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	54	2	2.60656	4.042175	5.47779	0.0256827	0.00187048	0.133676	0.0390476
chr7	12360373	12360464	3484983	0	-	0.21978	[0,0.28]	chr7	325886	3	INTRON	INTRON	VWDE	ENSG00000146530.15	ENST00000275358.8:ENST00000452576.6:ENST00000521169.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	57	2	2.69187	4.042045	5.39222	0.0221271	0.00453865	0.123903	0.0595107
chr3	15849283	15849383	1624340	0	-	0.34	(0.32,0.35]	chr3	168034	346	INTRON	INTRON	ANKRD28	ENSG00000206560.12	ENST00000399451.6:ENST00000412318.5:ENST00000439830.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	155	2	3.91688	4.042005	4.16713	8.85881e-5	7.04911e-6	0.00842626	0.00188332
chr11	126272285	126272381	4884260	0	+	0.427083	(0.408,0.44]	chr11	456717	4	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:SS5_PROX:INTRON	FOXRED1	ENSG00000110074.12	ENST00000689283.1:ENST00000688927.1:ENST00000532125.2:ENST00000692336.1:ENST00000686888.1:ENST00000685857.1:ENST00000525083.6:ENST00000685765.1:ENST00000688588.1:ENST00000685601.1:ENST00000685484.1:ENST00000533839.6:ENST00000690512.1:ENST00000534011.6:ENST00000263578.10:ENST00000689477.1:ENST00000689765.1:ENST00000692039.1:ENST00000525770.5:ENST00000685844.1:ENST00000526525.1:ENST00000527004.5:ENST00000693133.1:ENST00000526366.5:ENST00000524751.5:ENST00000686242.1:ENST00000687699.1:ENST00000532101.6:ENST00000687786.1:ENST00000534315.5:ENST00000688100.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	46	2	2.89193	4.041975	5.19202	0.00950364	0.0016671	0.0863579	0.0369207
chr13	49199268	49199366	5489255	0	+	0.418367	(0.408,0.44]	chr13	525734	3	INTRON	INTRON	FNDC3A	ENSG00000102531.16	ENST00000492622.6:ENST00000541916.5:ENST00000484074.5:ENST00000398316.7:ENST00000497644.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	46	2	2.89193	4.041975	5.19202	0.00950364	0.0016671	0.0863579	0.0369207
chr7	100036794	100036894	3363309	0	+	0.37	(0.35,0.378]	chr7	314249	27	UTR3	UTR3:EXON_MRNA	ZKSCAN1	ENSG00000106261.17	ENST00000535170.5:ENST00000324306.11:ENST00000620510.1	protein_coding	protein_coding	protein_coding	protein_coding	4	88	2	2.21686	4.04192	5.86698	0.00414535	1.76496e-4	0.0589266	0.01216
chr16	15866196	15866291	6451725	0	-	0.378947	(0.378,0.408]	chr16	621903	6	UTR3	UTR3:EXON_MRNA	CEP20	ENSG00000133393.13	ENST00000255759.11:ENST00000573968.5	protein_coding	protein_coding	protein_coding	protein_coding	2	63	2	2.41037	4.041875	5.67338	0.0100185	3.05145e-4	0.0880217	0.0161236
chr10	46029625	46029725	4608935	0	-	0.39	(0.378,0.408]	chr10	424589	17	INTRON	INTRON	NCOA4	ENSG00000266412.6	ENST00000581486.6:ENST00000585056.5:ENST00000580070.5:ENST00000578454.5:ENST00000579039.2	protein_coding	protein_coding	protein_coding	protein_coding	1	52	2	3.23708	4.041675	4.84627	0.00365053	0.00254319	0.0535094	0.0465056
chr18	49490190	49490260	6973155	0	-	0.4	(0.378,0.408]	chr18	689951	3	SS5_PROX	SS5_PROX:INTRON	RPL17-C18orf32:RPL17	ENSG00000215472.10:ENSG00000265681.8	ENST00000584895.5:ENST00000332968.11:ENST00000577910.1:ENST00000618619.4:ENST00000580261.6:ENST00000618613.5:ENST00000584364.5:ENST00000581373.5:ENST00000579248.5:ENST00000579408.5:ENST00000580210.5:ENST00000583637.5:ENST00000578532.5:ENST00000582588.1:ENST00000617346.4:ENST00000581091.1:ENST00000581741.1:ENST00000583036.5:ENST00000615760.4:ENST00000580387.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	52	2	3.23708	4.041675	4.84627	0.00365053	0.00254319	0.0535094	0.0465056
chr19	11937971	11938071	7019882	0	+	0.4	(0.378,0.408]	chr19	697884	123	INTRON	INTRON	ZNF700	ENSG00000196757.8	ENST00000622593.4:ENST00000254321.10	protein_coding	protein_coding	protein_coding	protein_coding	1	52	2	3.23708	4.041675	4.84627	0.00365053	0.00254319	0.0535094	0.0465056
chr7	127732097	127732197	3403211	0	+	0.42	(0.408,0.44]	chr7	318134	103	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000468166.5:ENST00000465900.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	49	2	2.89795	4.041655	5.18536	0.0110735	6.17381e-4	0.0873897	0.0223951
chr4	48837252	48837352	1958278	0	+	0.36	(0.35,0.378]	chr4	196223	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	OCIAD1	ENSG00000109180.15	ENST00000504654.5:ENST00000509122.5:ENST00000505922.6:ENST00000509664.5:ENST00000514981.5:ENST00000512981.5:ENST00000507210.5:ENST00000508996.5:ENST00000396448.6:ENST00000512236.5:ENST00000509164.5:ENST00000381473.7:ENST00000511102.5:ENST00000264312.12:ENST00000444354.6:ENST00000509963.5:ENST00000509246.5:ENST00000506801.5:ENST00000503016.5:ENST00000510824.5:ENST00000507546.5:ENST00000513641.5:ENST00000425583.6:ENST00000508293.5:ENST00000513391.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	64	2	2.67874	4.041595	5.40445	0.00373022	0.00114224	0.0561984	0.0307966
chr2	86168599	86168696	1170891	0	-	0.268041	[0,0.28]	chr2	124970	16	INTRON	INTRON	IMMT	ENSG00000132305.22	ENST00000449247.6:ENST00000254636.9:ENST00000410111.8:ENST00000442664.6:ENST00000419070.6:ENST00000409051.6:ENST00000474969.5:ENST00000490238.5:ENST00000409258.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	62	2	2.64309	4.041385	5.43968	0.0308646	0.00113119	0.13151	0.0308465
chr1	25446561	25446661	48103	0	+	0.39	(0.378,0.408]	chr1	5920	4	SS3_PROX	SS3_PROX:INTRON	MACO1	ENSG00000204178.11	ENST00000399766.7:ENST00000374343.5:ENST00000647928.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	22	2	3.98867	4.0412300000000005	4.09379	0.0507	0.023912	0.156383	0.129075
chr1	32050780	32050879	63023	0	+	0.393939	(0.378,0.408]	chr1	7991	50	INTRON	INTRON	KHDRBS1	ENSG00000121774.18	ENST00000484270.2	protein_coding	processed_transcript	protein_coding	processed_transcript	0	22	2	3.98867	4.0412300000000005	4.09379	0.0507	0.023912	0.156383	0.129075
chr10	32046088	32046186	4590726	0	-	0.397959	(0.378,0.408]	chr10	423304	53	INTRON	INTRON	KIF5B	ENSG00000170759.11	ENST00000302418.5	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.98867	4.0412300000000005	4.09379	0.0507	0.023912	0.156383	0.129075
chr12	89589124	89589222	5380741	0	-	0.387755	(0.378,0.408]	chr12	513318	12	UTR3	UTR3:EXON_MRNA	ATP2B1	ENSG00000070961.16	ENST00000428670.8:ENST00000359142.7:ENST00000261173.6	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.98867	4.0412300000000005	4.09379	0.0507	0.023912	0.156383	0.129075
chr14	70600115	70600215	5917444	0	-	0.4	(0.378,0.408]	chr14	562176	1	SS5_PROX	SS5_PROX:INTRON	MED6	ENSG00000133997.12	ENST00000554963.5:ENST00000615788.4:ENST00000256379.10:ENST00000430055.6:ENST00000440435.2:ENST00000553611.5:ENST00000556044.5:ENST00000556495.5:ENST00000554870.5:ENST00000556423.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	22	2	3.98867	4.0412300000000005	4.09379	0.0507	0.023912	0.156383	0.129075
chr16	21905837	21905935	6462332	0	-	0.387755	(0.378,0.408]	chr16	623573	4	INTRON	INTRON	SMG1P4	ENSG00000185710.9	ENST00000523028.5:ENST00000381448.8:ENST00000517529.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	22	2	3.98867	4.0412300000000005	4.09379	0.0507	0.023912	0.156383	0.129075
chr16	30713811	30713911	6338809	0	+	0.4	(0.378,0.408]	chr16	607781	1	SS5_PROX	SS5_PROX:INTRON	SRCAP	ENSG00000080603.17	ENST00000262518.9:ENST00000395059.6:ENST00000483083.3	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.98867	4.0412300000000005	4.09379	0.0507	0.023912	0.156383	0.129075
chr16	67079782	67079882	6366055	0	+	0.39	(0.378,0.408]	chr16	611431	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	CBFB	ENSG00000067955.15	ENST00000651988.1:ENST00000652360.1:ENST00000561924.6:ENST00000290858.11:ENST00000412916.7:ENST00000564034.6:ENST00000650873.1:ENST00000563939.3:ENST00000565389.1:ENST00000652116.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	22	2	3.98867	4.0412300000000005	4.09379	0.0507	0.023912	0.156383	0.129075
chr19	5947322	5947422	7125293	0	-	0.4	(0.378,0.408]	chr19	717357	51	INTRON	INTRON	RANBP3	ENSG00000031823.14	ENST00000340578.10:ENST00000439268.6:ENST00000592771.5:ENST00000591092.5:ENST00000034275.12:ENST00000587479.2:ENST00000592621.5:ENST00000590623.5:ENST00000591736.5:ENST00000590953.5:ENST00000588879.5:ENST00000587159.5:ENST00000586117.5:ENST00000589353.5:ENST00000587463.5:ENST00000588010.5:ENST00000591124.5:ENST00000585339.5:ENST00000592133.5:ENST00000591881.5:ENST00000589886.5:ENST00000587263.5:ENST00000587956.5:ENST00000591333.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	22	2	3.98867	4.0412300000000005	4.09379	0.0507	0.023912	0.156383	0.129075
chr19	9157833	9157865	7011418	0	+	0.40625	(0.378,0.408]	chr19	696248	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ZNF317	ENSG00000130803.15	ENST00000247956.11:ENST00000360385.7:ENST00000591278.5:ENST00000590152.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	22	2	3.98867	4.0412300000000005	4.09379	0.0507	0.023912	0.156383	0.129075
chr19	21752035	21752132	7159149	0	-	0.391753	(0.378,0.408]	chr19	723733	14	INTRON	INTRON	ZNF100	ENSG00000197020.12	ENST00000358296.11:ENST00000598026.1	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.98867	4.0412300000000005	4.09379	0.0507	0.023912	0.156383	0.129075
chr2	68215295	68215395	1146150	0	-	0.38	(0.378,0.408]	chr2	122389	263	INTRON	INTRON	PPP3R1	ENSG00000221823.11	ENST00000234310.8:ENST00000409752.5:ENST00000409377.1	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.98867	4.0412300000000005	4.09379	0.0507	0.023912	0.156383	0.129075
chr2	71399272	71399365	807712	0	+	0.387097	(0.378,0.408]	chr2	90243	1	SS3_PROX	SS3_PROX:INTRON	ZNF638	ENSG00000075292.19	ENST00000409544.5:ENST00000264447.9:ENST00000487638.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	22	2	3.98867	4.0412300000000005	4.09379	0.0507	0.023912	0.156383	0.129075
chr20	35458960	35459047	7262020	0	+	0.402299	(0.378,0.408]	chr20	737781	2	INTRON	INTRON	CEP250	ENSG00000126001.16	ENST00000446710.5:ENST00000420564.5:ENST00000476146.5:ENST00000461386.5:ENST00000397527.6:ENST00000397524.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	22	2	3.98867	4.0412300000000005	4.09379	0.0507	0.023912	0.156383	0.129075
chr21	36044256	36044356	7458555	0	-	0.39	(0.378,0.408]	chr21	759986	3	SS3_PROX	SS3_PROX:INTRON	SETD4	ENSG00000185917.14	ENST00000399212.5:ENST00000332131.9:ENST00000481477.5:ENST00000399215.5:ENST00000399201.5:ENST00000399208.6:ENST00000399205.5:ENST00000399207.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	22	2	3.98867	4.0412300000000005	4.09379	0.0507	0.023912	0.156383	0.129075
chr3	11326853	11326953	1364945	0	+	0.4	(0.378,0.408]	chr3	143872	110	INTRON	INTRON	ATG7	ENSG00000197548.13	ENST00000693202.1:ENST00000435760.6:ENST00000685771.1:ENST00000354449.7:ENST00000354956.9:ENST00000446450.6:ENST00000488924.5:ENST00000424071.5:ENST00000434066.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	22	2	3.98867	4.0412300000000005	4.09379	0.0507	0.023912	0.156383	0.129075
chr3	25642121	25642221	1641939	0	-	0.38	(0.378,0.408]	chr3	168581	4	SS5_PROX	SS5_PROX:INTRON	TOP2B	ENSG00000077097.16	ENST00000264331.9:ENST00000435706.6:ENST00000424225.1	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.98867	4.0412300000000005	4.09379	0.0507	0.023912	0.156383	0.129075
chr5	69095036	69095136	2379588	0	+	0.38	(0.378,0.408]	chr5	229053	3	INTRON	INTRON	SLC30A5	ENSG00000145740.20	ENST00000380860.8:ENST00000396591.8:ENST00000504103.5:ENST00000502979.1	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.98867	4.0412300000000005	4.09379	0.0507	0.023912	0.156383	0.129075
chr5	79512069	79512169	2660123	0	-	0.4	(0.378,0.408]	chr5	252127	547	INTRON	INTRON	HOMER1	ENSG00000152413.15	ENST00000334082.11:ENST00000282260.10:ENST00000508576.5:ENST00000535690.1	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.98867	4.0412300000000005	4.09379	0.0507	0.023912	0.156383	0.129075
chr5	180535272	180535371	2562274	0	+	0.40404	(0.378,0.408]	chr5	245090	55	INTRON	INTRON	CNOT6	ENSG00000113300.13	ENST00000261951.9:ENST00000393356.7:ENST00000507016.1:ENST00000618123.4:ENST00000502447.1:ENST00000504343.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	22	2	3.98867	4.0412300000000005	4.09379	0.0507	0.023912	0.156383	0.129075
chr7	50306310	50306408	3316715	0	+	0.397959	(0.378,0.408]	chr7	308243	10	INTRON	INTRON	IKZF1	ENSG00000185811.20	ENST00000642219.1:ENST00000645066.1:ENST00000484847.6:ENST00000646110.1:ENST00000331340.8:ENST00000413698.5:ENST00000349824.8:ENST00000343574.9:ENST00000357364.8:ENST00000440768.6:ENST00000346667.8:ENST00000615491.4:ENST00000359197.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	22	2	3.98867	4.0412300000000005	4.09379	0.0507	0.023912	0.156383	0.129075
chr7	75026579	75026678	3337003	0	+	0.393939	(0.378,0.408]	chr7	310610	20	UTR3	UTR3:EXON_MRNA	CASTOR2	ENSG00000274070.2	ENST00000616305.2	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.98867	4.0412300000000005	4.09379	0.0507	0.023912	0.156383	0.129075
chr7	107235354	107235453	3609723	0	-	0.40404	(0.378,0.408]	chr7	336619	43	INTRON	INTRON	COG5	ENSG00000164597.15	ENST00000297135.9:ENST00000347053.8:ENST00000393603.7:ENST00000464542.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	22	2	3.98867	4.0412300000000005	4.09379	0.0507	0.023912	0.156383	0.129075
chr9	4825578	4825675	4095193	0	+	0.381443	(0.378,0.408]	chr9	373161	16	INTRON	INTRON	RCL1	ENSG00000120158.12	ENST00000381750.9:ENST00000381732.3:ENST00000442869.5:ENST00000473230.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	22	2	3.98867	4.0412300000000005	4.09379	0.0507	0.023912	0.156383	0.129075
chr9	38054728	38054828	4254191	0	-	0.38	(0.378,0.408]	chr9	391691	382	INTRON	INTRON	SHB	ENSG00000107338.10	ENST00000377707.4	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.98867	4.0412300000000005	4.09379	0.0507	0.023912	0.156383	0.129075
chr9	125300593	125300692	4198647	0	+	0.40404	(0.378,0.408]	chr9	383168	11	INTRON	INTRON	GAPVD1	ENSG00000165219.23	ENST00000497580.5:ENST00000461379.5:ENST00000297933.11:ENST00000394084.5:ENST00000470056.5:ENST00000394105.6:ENST00000394083.6:ENST00000495955.5:ENST00000467750.5:ENST00000394104.6:ENST00000312123.13	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	22	2	3.98867	4.0412300000000005	4.09379	0.0507	0.023912	0.156383	0.129075
chr11	4041734	4041834	4725332	0	+	0.5	(0.476,0.515]	chr11	437170	174	INTRON	INTRON	STIM1	ENSG00000167323.12	ENST00000525403.5:ENST00000526596.2:ENST00000300737.8:ENST00000616714.4:ENST00000527651.5:ENST00000532610.5:ENST00000532919.5:ENST00000530554.5:ENST00000528656.5:ENST00000525055.5:ENST00000532990.1:ENST00000526771.5:ENST00000527484.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	65	2	2.54157	4.0410900000000005	5.54061	0.00697457	1.30462e-4	0.0718189	0.00983066
chr7	65894339	65894438	3323088	0	+	0.262626	[0,0.28]	chr7	309012	204	INTRON	INTRON	VKORC1L1	ENSG00000196715.7	ENST00000360768.5:ENST00000648187.1:ENST00000648179.1:ENST00000434382.2	protein_coding	protein_coding	protein_coding	protein_coding	2	86	2	2.51584	4.0409749999999995	5.56611	0.0115397	7.02173e-4	0.0889104	0.0241881
chr3	48077379	48077479	1687385	0	-	0.42	(0.408,0.44]	chr3	172280	611	INTRON	INTRON	MAP4	ENSG00000047849.22	ENST00000395734.7:ENST00000426837.6:ENST00000360240.10:ENST00000423088.5:ENST00000439356.2:ENST00000468075.2	protein_coding	protein_coding	protein_coding	protein_coding	2	62	2	2.94481	4.040915	5.13702	0.00202889	0.00110214	0.04086	0.03038
chr5	157853731	157853831	2758601	0	-	0.36	(0.35,0.378]	chr5	260304	358	INTRON	INTRON	CLINT1	ENSG00000113282.14	ENST00000523094.5:ENST00000411809.7:ENST00000530742.5:ENST00000523908.5	protein_coding	protein_coding	protein_coding	protein_coding	1	52	2	2.66547	4.0408100000000005	5.41615	0.0233639	3.21724e-4	0.118323	0.0159645
chr6	47492547	47492646	2873712	0	+	0.575758	(0.57,1]	chr6	272725	35	INTRON	INTRON	CD2AP	ENSG00000198087.7	ENST00000359314.5	protein_coding	protein_coding	protein_coding	protein_coding	2	40	2	2.95123	4.04072	5.13021	8.39007e-4	1.21664e-4	0.0263691	0.00992813
chr1	15536559	15536644	32896	0	+	0.376471	(0.35,0.378]	chr1	3990	2	CDS	CDS:UTR5:EXON_MRNA	DNAJC16	ENSG00000116138.13	ENST00000375849.5:ENST00000475133.5:ENST00000616884.4:ENST00000375838.5:ENST00000375847.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	52	2	2.99044	4.04048	5.09052	0.00894806	0.00123501	0.0799922	0.0326215
chr20	5112541	5112619	7311522	0	-	0.346154	(0.32,0.35]	chr20	744466	4	SS5_PROX	SS5_PROX:INTRON	TMEM230	ENSG00000089063.15	ENST00000615008.4:ENST00000612323.4:ENST00000202834.11:ENST00000379283.6:ENST00000379279.6:ENST00000379299.6:ENST00000379286.6:ENST00000492419.1:ENST00000379277.6:ENST00000342308.10:ENST00000379276.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	50	2	2.84569	4.040445	5.2352	0.0121137	0.0028268	0.0962599	0.0472361
chr20	32438131	32438230	7256634	0	+	0.323232	(0.32,0.35]	chr20	737105	9	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	ASXL1	ENSG00000171456.21	ENST00000651418.1:ENST00000375687.10:ENST00000613218.4:ENST00000646985.1:ENST00000306058.9:ENST00000647223.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	50	2	2.84569	4.040445	5.2352	0.0121137	0.0028268	0.0962599	0.0472361
chr4	138240996	138241094	2245820	0	-	0.367347	(0.35,0.378]	chr4	219514	42	INTRON	INTRON	SLC7A11	ENSG00000151012.13	ENST00000280612.9	protein_coding	protein_coding	protein_coding	protein_coding	1	56	2	2.24535	4.04012	5.83489	0.0647516	4.33823e-5	0.179192	0.00532052
chr10	125081498	125081598	4713544	0	-	0.39	(0.378,0.408]	chr10	434897	420	INTRON	INTRON	CTBP2	ENSG00000175029.17	ENST00000337195.9:ENST00000411419.6:ENST00000494626.6:ENST00000531469.5:ENST00000460976.5:ENST00000476817.1:ENST00000530884.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	62	2	2.61188	4.0401050000000005	5.46833	0.0047055	7.05018e-4	0.0631419	0.024224
chr2	55595725	55595825	1124901	0	-	0.38	(0.378,0.408]	chr2	120665	64	INTRON	INTRON	PPP4R3B	ENSG00000275052.5	ENST00000616407.2:ENST00000611717.4:ENST00000616288.4	protein_coding	protein_coding	protein_coding	protein_coding	2	62	2	2.61188	4.0401050000000005	5.46833	0.0047055	7.05018e-4	0.0631419	0.024224
chr1	31259651	31259735	412905	0	-	0.285714	(0.28,0.32]	chr1	49758	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	SNRNP40	ENSG00000060688.13	ENST00000263694.9:ENST00000486941.1:ENST00000489853.1:ENST00000373720.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	71	2	2.33771	4.040025	5.7423400000000004	0.0142701	7.31742e-4	0.103838	0.0248722
chr5	115523607	115523707	2707022	0	-	0.31	(0.28,0.32]	chr5	254753	28	UTR3	UTR3:EXON_MRNA	FEM1C	ENSG00000145780.8	ENST00000274457.5	protein_coding	protein_coding	protein_coding	protein_coding	1	57	2	2.67975	4.0396849999999995	5.39962	0.0252505	7.06751e-4	0.12011	0.0241881
chrX	154693320	154693420	7914734	0	-	0.37	(0.35,0.378]	chrX	806068	127	INTRON	INTRON	GAB3	ENSG00000160219.12	ENST00000496390.5:ENST00000424127.3:ENST00000369575.7:ENST00000369568.8:ENST00000475685.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	54	2	3.25549	4.03963	4.82377	0.00363602	0.00325499	0.0535085	0.0524329
chr17	72821504	72821604	6832231	0	-	0.3	(0.28,0.32]	chr17	675155	32	INTRON	INTRON	SLC39A11	ENSG00000133195.12	ENST00000255559.8:ENST00000542342.6:ENST00000582769.5:ENST00000581581.1:ENST00000579319.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	57	2	2.82769	4.03955	5.25141	0.0169391	0.00125199	0.103888	0.0328543
chr5	159174558	159174658	2758835	0	-	0.31	(0.28,0.32]	chr5	260343	4	SS3_PROX	SS3_PROX:INTRON	RNF145	ENSG00000145860.12	ENST00000424310.7:ENST00000519865.5:ENST00000274542.6:ENST00000611185.4:ENST00000521606.6:ENST00000518802.5:ENST00000520638.1	protein_coding	protein_coding	protein_coding	protein_coding	1	57	2	2.82769	4.03955	5.25141	0.0169391	0.00125199	0.103888	0.0328543
chr6	149529369	149529468	3245396	0	-	0.434343	(0.408,0.44]	chr6	301508	22	INTRON	INTRON	PPIL4	ENSG00000131013.4	ENST00000253329.3	protein_coding	protein_coding	protein_coding	protein_coding	1	49	2	2.78122	4.039505	5.29779	0.015812	3.80479e-4	0.101453	0.0176313
chr7	130080503	130080602	3413694	0	+	0.414141	(0.408,0.44]	chr7	319098	93	INTRON	INTRON	KLHDC10	ENSG00000128607.14	ENST00000335420.10:ENST00000463413.1:ENST00000468226.1	protein_coding	protein_coding	protein_coding	protein_coding	2	66	2	2.53313	4.03937	5.54561	0.00739595	1.20601e-4	0.074277	0.00938389
chr16	90161781	90161879	6424499	0	+	0.520408	(0.515,0.57]	chr16	617225	2	EXON_LNCRNA	EXON_LNCRNA:INTRON	FAM157C	ENSG00000260528.6	ENST00000568070.1:ENST00000570230.1	lncRNA	lncRNA	lncRNA	lncRNA	3	72	2	2.60978	4.039295	5.46881	0.00151689	9.03271e-5	0.0352794	0.00795396
chr4	176320804	176320901	2083102	0	+	0.381443	(0.378,0.408]	chr4	205874	7	EXON_MRNA	EXON_MRNA:INTRON	SPCS3	ENSG00000129128.13	ENST00000503362.2:ENST00000507678.5:ENST00000513139.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	142	2	3.93523	4.0391449999999995	4.14306	1.93873e-4	1.0592e-6	0.0127226	5.89048e-4
chr10	73051449	73051549	4647385	0	-	0.51	(0.476,0.515]	chr10	427523	2	SS3_PROX	SS3_PROX:INTRON	P4HA1	ENSG00000122884.13	ENST00000394890.7:ENST00000307116.6:ENST00000373008.6:ENST00000440381.5:ENST00000263556.3	protein_coding	protein_coding	protein_coding	protein_coding	1	49	2	2.63168	4.039105	5.44653	0.0237106	2.03754e-4	0.118716	0.0124395
chr8	103439181	103439281	3822302	0	+	0.54	(0.515,0.57]	chr8	353715	30	INTRON	INTRON	DCAF13	ENSG00000164934.14	ENST00000297579.9:ENST00000616836.4:ENST00000521999.5:ENST00000612750.5:ENST00000518554.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	43	2	2.74772	4.038645000000001	5.32957	0.0142192	4.06834e-4	0.103638	0.0185763
chr7	5206931	5207030	3272129	0	+	0.444444	(0.44,0.476]	chr7	304097	69	INTRON	INTRON	WIPI2	ENSG00000157954.15	ENST00000401525.7:ENST00000288828.9:ENST00000404704.7:ENST00000466014.5:ENST00000485854.5:ENST00000382384.6:ENST00000496867.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	49	2	2.67572	4.03862	5.40152	0.0212064	2.39829e-4	0.113017	0.0136403
chr11	46549051	46549151	4946810	0	-	0.4	(0.378,0.408]	chr11	463523	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	AMBRA1	ENSG00000110497.15	ENST00000683756.1:ENST00000534300.5:ENST00000533727.5:ENST00000314845.7:ENST00000458649.6:ENST00000528950.1:ENST00000531542.1:ENST00000526606.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	50	2	2.84663	4.0383700000000005	5.23011	0.0133954	5.72873e-4	0.0946278	0.0217398
chr2	37572491	37572591	745925	0	+	0.35	(0.32,0.35]	chr2	85455	9	INTRON	INTRON	ENSG00000236213	ENSG00000236213.3	ENST00000659653.1	lncRNA	lncRNA	lncRNA	lncRNA	1	52	2	3.45772	4.038305	4.61889	0.0166646	0.00128487	0.102621	0.0333518
chr11	66060919	66061008	4807769	0	+	0.516854	(0.515,0.57]	chr11	447292	2	SS5_PROX	SS5_PROX:INTRON	SF3B2	ENSG00000087365.16	ENST00000528302.5:ENST00000322535.11:ENST00000530981.1	protein_coding	protein_coding	protein_coding	protein_coding	1	45	2	3.30665	4.038245	4.76984	0.00213226	0.00198034	0.041756	0.0411469
chr17	47669177	47669275	6622782	0	+	0.561224	(0.515,0.57]	chr17	646054	1	SS3_PROX	SS3_PROX:INTRON	KPNB1	ENSG00000108424.11	ENST00000535458.6:ENST00000583648.6:ENST00000290158.9:ENST00000540627.5:ENST00000582097.5:ENST00000583013.1	protein_coding	protein_coding	protein_coding	protein_coding	1	45	2	3.30665	4.038245	4.76984	0.00213226	0.00198034	0.041756	0.0411469
chr3	155923964	155924061	1537674	0	+	0.515464	(0.515,0.57]	chr3	160152	13	INTRON	INTRON	GMPS	ENSG00000163655.16	ENST00000496455.7:ENST00000295920.7	protein_coding	protein_coding	protein_coding	protein_coding	1	45	2	3.30665	4.038245	4.76984	0.00213226	0.00198034	0.041756	0.0411469
chr9	113227372	113227468	4189142	0	+	0.520833	(0.515,0.57]	chr9	381955	2	EXON_LNCRNA	EXON_LNCRNA:INTRON	SLC31A1	ENSG00000136868.11	ENST00000374212.5:ENST00000496650.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	42	2	3.31388	4.0381599999999995	4.76244	0.00362147	0.00174704	0.0533855	0.0386026
chr3	15783950	15784050	1623681	0	-	0.36	(0.35,0.378]	chr3	168013	19	INTRON	INTRON	ANKRD28	ENSG00000206560.12	ENST00000399451.6:ENST00000624145.3:ENST00000683139.1:ENST00000412318.5:ENST00000497037.5:ENST00000451422.1:ENST00000498524.5:ENST00000439830.5:ENST00000461696.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	77	2	2.24196	4.03779	5.83362	0.00744693	2.04087e-4	0.0772645	0.0129859
chr1	6536536	6536636	367938	0	-	0.51	(0.476,0.515]	chr1	43209	27	INTRON	INTRON	NOL9	ENSG00000162408.11	ENST00000377705.6:ENST00000464383.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	22	2	3.83018	4.037595	4.24501	0.0423385	0.0247713	0.161744	0.12011
chr1	32223733	32223833	64481	0	+	0.5	(0.476,0.515]	chr1	8265	3	SS3_PROX	SS3_PROX:INTRON	EIF3I	ENSG00000084623.12	ENST00000677701.1:ENST00000677760.1:ENST00000676801.1:ENST00000677772.1:ENST00000677202.1:ENST00000677844.1:ENST00000373586.2:ENST00000677676.1:ENST00000678689.1:ENST00000676679.1:ENST00000677198.1:ENST00000678150.1:ENST00000678063.1:ENST00000676554.1:ENST00000676998.1:ENST00000677711.2:ENST00000678842.1:ENST00000678968.1:ENST00000677378.1:ENST00000677640.1:ENST00000678534.1:ENST00000679290.1:ENST00000678889.1:ENST00000677767.1:ENST00000474371.2:ENST00000677540.1:ENST00000676837.1:ENST00000678420.1:ENST00000678162.1:ENST00000677183.1:ENST00000678711.1:ENST00000678883.1:ENST00000677353.1:ENST00000677053.1:ENST00000677580.1:ENST00000679270.1:ENST00000355082.10:ENST00000489353.6:ENST00000471486.6:ENST00000676957.1:ENST00000483517.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	22	2	3.83018	4.037595	4.24501	0.0423385	0.0247713	0.161744	0.12011
chr1	40279719	40279819	80998	0	+	0.49	(0.476,0.515]	chr1	10502	2	SS3_PROX	SS3_PROX:INTRON	ZMPSTE24	ENSG00000084073.10	ENST00000675937.1:ENST00000674703.1:ENST00000372759.4:ENST00000675754.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	22	2	3.83018	4.037595	4.24501	0.0423385	0.0247713	0.161744	0.12011
chr1	151614466	151614566	225744	0	+	0.48	(0.476,0.515]	chr1	25860	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	SNX27	ENSG00000143376.14	ENST00000642376.1:ENST00000368843.8:ENST00000458013.7:ENST00000368841.7:ENST00000642479.1:ENST00000642349.1:ENST00000643179.1:ENST00000643814.1:ENST00000642582.1:ENST00000644970.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	22	2	3.83018	4.037595	4.24501	0.0423385	0.0247713	0.161744	0.12011
chr1	173959583	173959682	587401	0	-	0.484848	(0.476,0.515]	chr1	70687	71	INTRON	INTRON	RC3H1	ENSG00000135870.12	ENST00000367696.7:ENST00000258349.8:ENST00000367694.2	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.83018	4.037595	4.24501	0.0423385	0.0247713	0.161744	0.12011
chr1	206591707	206591774	624644	0	-	0.477612	(0.476,0.515]	chr1	74355	2	UTR3	UTR3:EXON_MRNA:INTRON	EIF2D	ENSG00000143486.16	ENST00000472709.6:ENST00000271764.7:ENST00000367114.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	22	2	3.83018	4.037595	4.24501	0.0423385	0.0247713	0.161744	0.12011
chr10	45874291	45874391	4607674	0	-	0.5	(0.476,0.515]	chr10	424444	108	INTRON	INTRON	PARGP1	ENSG00000239883.9	ENST00000440803.7:ENST00000688192.1:ENST00000686367.1:ENST00000693310.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	22	2	3.83018	4.037595	4.24501	0.0423385	0.0247713	0.161744	0.12011
chr13	110675973	110676073	5649805	0	-	0.51	(0.476,0.515]	chr13	538251	81	INTRON	INTRON	CARS2	ENSG00000134905.17	ENST00000257347.9:ENST00000481787.6:ENST00000535398.5:ENST00000543487.5:ENST00000537743.1:ENST00000465145.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	22	2	3.83018	4.037595	4.24501	0.0423385	0.0247713	0.161744	0.12011
chr14	52678018	52678118	5894897	0	-	0.48	(0.476,0.515]	chr14	559830	3	SS5_PROX	SS5_PROX:INTRON	ERO1A	ENSG00000197930.13	ENST00000395686.8:ENST00000554019.5:ENST00000556039.5:ENST00000629528.2:ENST00000554251.5:ENST00000556223.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	22	2	3.83018	4.037595	4.24501	0.0423385	0.0247713	0.161744	0.12011
chr16	23427246	23427346	6463823	0	-	0.5	(0.476,0.515]	chr16	623771	19	INTRON	INTRON	COG7	ENSG00000168434.13	ENST00000307149.10	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.83018	4.037595	4.24501	0.0423385	0.0247713	0.161744	0.12011
chr16	70000762	70000862	6509048	0	-	0.49	(0.476,0.515]	chr16	630286	39	INTRON	INTRON	PDXDC2P-NPIPB14P	ENSG00000196696.13	ENST00000531894.5:ENST00000530079.5:ENST00000525331.6:ENST00000526478.5:ENST00000529089.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	0	22	2	3.83018	4.037595	4.24501	0.0423385	0.0247713	0.161744	0.12011
chr17	75330604	75330704	6837047	0	-	0.48	(0.476,0.515]	chr17	675710	42	INTRON	INTRON	GRB2	ENSG00000177885.15	ENST00000316615.9:ENST00000316804.10:ENST00000392562.5:ENST00000392564.5:ENST00000392563.5:ENST00000648046.1:ENST00000578961.5:ENST00000582582.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	22	2	3.83018	4.037595	4.24501	0.0423385	0.0247713	0.161744	0.12011
chr18	9496812	9496912	6871347	0	+	0.48	(0.476,0.515]	chr18	680716	170	INTRON	INTRON	RALBP1	ENSG00000017797.13	ENST00000019317.8:ENST00000585015.6:ENST00000383432.8:ENST00000609094.2:ENST00000458039.3:ENST00000577221.1	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.83018	4.037595	4.24501	0.0423385	0.0247713	0.161744	0.12011
chr2	32629355	32629451	733511	0	+	0.5	(0.476,0.515]	chr2	84713	6	INTRON	INTRON	TTC27	ENSG00000018699.13	ENST00000448773.5:ENST00000317907.9:ENST00000647819.1:ENST00000454690.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	22	2	3.83018	4.037595	4.24501	0.0423385	0.0247713	0.161744	0.12011
chr2	97533758	97533855	1183663	0	-	0.505155	(0.476,0.515]	chr2	126915	10	INTRON	INTRON	ANKRD36B	ENSG00000196912.13	ENST00000359901.9:ENST00000258459.12	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.83018	4.037595	4.24501	0.0423385	0.0247713	0.161744	0.12011
chr3	130987252	130987352	1503873	0	+	0.48	(0.476,0.515]	chr3	157315	62	INTRON	INTRON	ATP2C1	ENSG00000017260.20	ENST00000504381.5:ENST00000505330.5:ENST00000507488.6:ENST00000508532.5:ENST00000533801.6:ENST00000510168.6:ENST00000513801.5:ENST00000504948.5:ENST00000328560.12:ENST00000428331.6:ENST00000422190.6:ENST00000359644.7:ENST00000504612.5:ENST00000514654.5:ENST00000504571.5:ENST00000508660.5:ENST00000510774.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	22	2	3.83018	4.037595	4.24501	0.0423385	0.0247713	0.161744	0.12011
chr4	78856	78956	1905547	0	+	0.48	(0.476,0.515]	chr4	191008	105	INTRON	INTRON	ZNF595	ENSG00000272602.6	ENST00000608255.2:ENST00000609518.5:ENST00000610261.6	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.83018	4.037595	4.24501	0.0423385	0.0247713	0.161744	0.12011
chr4	861521	861621	2093555	0	-	0.48	(0.476,0.515]	chr4	206857	14	INTRON	INTRON	GAK	ENSG00000178950.18	ENST00000314167.9:ENST00000511163.5:ENST00000509566.1:ENST00000515868.5:ENST00000511980.5:ENST00000510799.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	22	2	3.83018	4.037595	4.24501	0.0423385	0.0247713	0.161744	0.12011
chr4	23036321	23036420	1928487	0	+	0.494949	(0.476,0.515]	chr4	193943	31	INTRON	INTRON	ENSG00000248837	ENSG00000248837.7	ENST00000659942.1:ENST00000655325.1:ENST00000655182.1:ENST00000660103.1:ENST00000506425.2:ENST00000652324.1:ENST00000653008.1:ENST00000654546.1:ENST00000666412.1:ENST00000511453.5:ENST00000667179.1:ENST00000655768.1:ENST00000661585.1:ENST00000660296.1:ENST00000663529.1:ENST00000653872.1:ENST00000660370.1:ENST00000667156.1:ENST00000658109.1:ENST00000653188.1:ENST00000662431.1:ENST00000654588.1:ENST00000666579.1:ENST00000503017.2:ENST00000665739.1:ENST00000671537.1:ENST00000663348.1	lncRNA	lncRNA	lncRNA	lncRNA	0	22	2	3.83018	4.037595	4.24501	0.0423385	0.0247713	0.161744	0.12011
chr4	48768480	48768579	2139506	0	-	0.515152	(0.476,0.515]	chr4	211018	406	INTRON	INTRON	FRYL	ENSG00000075539.15	ENST00000358350.9:ENST00000503238.6:ENST00000507711.5:ENST00000502520.5:ENST00000505437.5:ENST00000514783.5:ENST00000509886.5:ENST00000515684.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	22	2	3.83018	4.037595	4.24501	0.0423385	0.0247713	0.161744	0.12011
chr5	65767484	65767583	2369779	0	+	0.515152	(0.476,0.515]	chr5	228393	40	INTRON	INTRON	NLN	ENSG00000123213.23	ENST00000380985.10:ENST00000502464.5:ENST00000506539.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	22	2	3.83018	4.037595	4.24501	0.0423385	0.0247713	0.161744	0.12011
chr5	70223212	70223312	2638018	0	-	0.5	(0.476,0.515]	chr5	250613	8	INTRON	INTRON	GUSBP14	ENSG00000253816.3	ENST00000514522.2	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	0	22	2	3.83018	4.037595	4.24501	0.0423385	0.0247713	0.161744	0.12011
chr6	43636873	43636964	2872014	0	+	0.505495	(0.476,0.515]	chr6	272332	1	SS5_PROX	SS5_PROX:INTRON	MAD2L1BP	ENSG00000124688.14	ENST00000451025.6:ENST00000372171.5	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.83018	4.037595	4.24501	0.0423385	0.0247713	0.161744	0.12011
chr7	74247551	74247647	3555708	0	-	0.510417	(0.476,0.515]	chr7	331018	4	INTRON	INTRON	RFC2	ENSG00000049541.11	ENST00000352131.7:ENST00000055077.8:ENST00000621097.4:ENST00000494019.5:ENST00000470266.5:ENST00000480432.5:ENST00000479105.6:ENST00000491206.5:ENST00000493156.6:ENST00000463194.1:ENST00000473493.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	22	2	3.83018	4.037595	4.24501	0.0423385	0.0247713	0.161744	0.12011
chr7	99511752	99511852	3362449	0	+	0.51	(0.476,0.515]	chr7	314086	49	INTRON	INTRON	ZKSCAN5	ENSG00000196652.12	ENST00000326775.10:ENST00000451158.5:ENST00000394170.6:ENST00000454175.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	22	2	3.83018	4.037595	4.24501	0.0423385	0.0247713	0.161744	0.12011
chr7	100810559	100810658	3587639	0	-	0.515152	(0.476,0.515]	chr7	334676	26	INTRON	INTRON	EPHB4	ENSG00000196411.10	ENST00000358173.8:ENST00000616502.4:ENST00000360620.7:ENST00000487222.5:ENST00000478459.5:ENST00000467515.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	22	2	3.83018	4.037595	4.24501	0.0423385	0.0247713	0.161744	0.12011
chr9	127530951	127531049	4355669	0	-	0.479592	(0.476,0.515]	chr9	399841	33	INTRON	INTRON	NIBAN2	ENSG00000136830.12	ENST00000373314.7:ENST00000373312.4:ENST00000478917.1:ENST00000468379.1:ENST00000484348.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	22	2	3.83018	4.037595	4.24501	0.0423385	0.0247713	0.161744	0.12011
chr11	117144918	117145016	4869094	0	+	0.397959	(0.378,0.408]	chr11	454434	1	INTRON	INTRON	PAFAH1B2	ENSG00000168092.14	ENST00000419197.6:ENST00000527958.6:ENST00000304808.10:ENST00000529887.6:ENST00000526888.1:ENST00000530272.1:ENST00000533206.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	50	2	2.78946	4.037335000000001	5.28521	0.0158859	4.52877e-4	0.101453	0.0192381
chr12	123359514	123359614	5445155	0	-	0.38	(0.378,0.408]	chr12	521118	87	INTRON	INTRON	SBNO1	ENSG00000139697.14	ENST00000602398.3:ENST00000267176.8	protein_coding	protein_coding	protein_coding	protein_coding	1	50	2	2.78946	4.037335000000001	5.28521	0.0158859	4.52877e-4	0.101453	0.0192381
chr8	129476650	129476750	4060041	0	-	0.39	(0.378,0.408]	chr8	369602	194	INTRON	INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1:ENST00000676273.1:ENST00000667643.1:ENST00000668791.1:ENST00000663716.1:ENST00000663572.1:ENST00000676148.1:ENST00000667962.1:ENST00000674877.1:ENST00000675316.1:ENST00000674656.1:ENST00000446592.7:ENST00000667341.1:ENST00000675186.1:ENST00000652971.1:ENST00000661447.1:ENST00000674863.1:ENST00000675498.1:ENST00000675527.1:ENST00000676108.1:ENST00000657647.1:ENST00000675589.1:ENST00000675913.1:ENST00000675109.1:ENST00000671632.1:ENST00000671311.1:ENST00000676099.1:ENST00000660652.1:ENST00000675522.1:ENST00000675183.1:ENST00000658861.1:ENST00000663991.1:ENST00000675044.1:ENST00000675435.1:ENST00000674639.1:ENST00000676069.1:ENST00000675532.1:ENST00000674762.1:ENST00000523151.6:ENST00000675948.1:ENST00000665364.1:ENST00000657251.1:ENST00000675166.1:ENST00000674883.1:ENST00000675867.1:ENST00000674580.1:ENST00000675393.1:ENST00000520048.1:ENST00000674906.1:ENST00000676030.1:ENST00000670588.1:ENST00000675072.1:ENST00000664936.1:ENST00000652914.1:ENST00000657069.1	lncRNA	lncRNA	lncRNA	lncRNA	1	50	2	2.78946	4.037335000000001	5.28521	0.0158859	4.52877e-4	0.101453	0.0192381
chr19	35158700	35158800	7054373	0	+	0.38	(0.378,0.408]	chr19	703810	3	SS5_PROX	SS5_PROX:INTRON	FXYD5	ENSG00000089327.15	ENST00000543307.5:ENST00000392218.6:ENST00000392219.7:ENST00000592290.5:ENST00000590686.5:ENST00000541435.6:ENST00000496493.5:ENST00000342879.7:ENST00000588699.5:ENST00000423817.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	50	2	2.90162	4.037215	5.17281	0.0113157	7.27294e-4	0.0886121	0.0245647
chr7	129013586	129013685	3636165	0	-	0.40404	(0.378,0.408]	chr7	338122	81	INTRON	INTRON	TNPO3	ENSG00000064419.14	ENST00000627585.2:ENST00000265388.10:ENST00000471234.5:ENST00000482320.5:ENST00000471166.1	protein_coding	protein_coding	protein_coding	protein_coding	1	50	2	2.90162	4.037215	5.17281	0.0113157	7.27294e-4	0.0886121	0.0245647
chr4	78802779	78802879	1981649	0	+	0.27	[0,0.28]	chr4	198463	257	INTRON	INTRON	BMP2K	ENSG00000138756.19	ENST00000389010.7:ENST00000502613.3:ENST00000502871.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	193	2	3.5731	4.037105	4.50111	2.19519e-4	1.3585e-5	0.0135522	0.00275435
chr1	205086630	205086728	622064	0	-	0.285714	(0.28,0.32]	chr1	73954	6	UTR3	UTR3:EXON_MRNA	RBBP5	ENSG00000117222.14	ENST00000367164.1:ENST00000264515.11	protein_coding	protein_coding	protein_coding	protein_coding	1	52	2	2.97333	4.03701	5.10069	0.00857834	0.00610574	0.083729	0.0676501
chr10	7325945	7326045	4552082	0	-	0.31	(0.28,0.32]	chr10	420230	396	INTRON	INTRON	SFMBT2	ENSG00000198879.13	ENST00000397167.6:ENST00000361972.8:ENST00000684547.1:ENST00000683762.1:ENST00000673876.1:ENST00000682896.1:ENST00000379713.8:ENST00000682101.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	52	2	2.97333	4.03701	5.10069	0.00857834	0.00610574	0.083729	0.0676501
chr14	100374365	100374442	5968891	0	-	0.428571	(0.408,0.44]	chr14	567137	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	WARS1	ENSG00000140105.18	ENST00000392882.7:ENST00000358655.8:ENST00000355338.6:ENST00000344102.9:ENST00000557135.5:ENST00000556645.5:ENST00000553395.5:ENST00000556504.5:ENST00000557722.5:ENST00000557297.5:ENST00000556435.5:ENST00000553808.5:ENST00000554331.5:ENST00000555063.5:ENST00000556338.5:ENST00000557239.5:ENST00000556698.5:ENST00000553524.5:ENST00000555410.5:ENST00000556579.5:ENST00000554772.5:ENST00000556660.5:ENST00000556783.5:ENST00000553413.5:ENST00000557094.5:ENST00000553769.6:ENST00000553545.5:ENST00000554820.5:ENST00000557347.5:ENST00000554509.5:ENST00000556209.5:ENST00000554605.5:ENST00000555813.5:ENST00000556695.5:ENST00000556295.5:ENST00000555031.5:ENST00000553934.1:ENST00000553581.1:ENST00000555464.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	53	2	2.27698	4.036415	5.79585	0.0583528	3.36399e-5	0.167723	0.00463632
chr16	1357599	1357699	6274218	0	+	0.58	(0.57,1]	chr16	599244	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	GNPTG	ENSG00000090581.11	ENST00000204679.9:ENST00000526820.5:ENST00000683366.1:ENST00000527876.5:ENST00000527168.6:ENST00000534197.5:ENST00000683887.1:ENST00000529110.2:ENST00000684126.1:ENST00000529957.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	33	2	3.6291	4.03638	4.44366	0.00210922	3.02868e-4	0.0425419	0.0160895
chr19	50800132	50800223	7203141	0	-	0.582418	(0.57,1]	chr19	730901	4	INTRON	INTRON	C19orf48	ENSG00000167747.16	ENST00000641834.2:ENST00000596287.6:ENST00000597705.6:ENST00000693315.1:ENST00000597493.6:ENST00000692421.1:ENST00000598463.5:ENST00000596655.1:ENST00000593287.5:ENST00000600373.5:ENST00000601267.5:ENST00000595794.5:ENST00000596554.5:ENST00000599004.1	transcribed_unitary_pseudogene	retained_intron	transcribed_unitary_pseudogene	retained_intron:processed_transcript	1	33	2	3.6291	4.03638	4.44366	0.00210922	3.02868e-4	0.0425419	0.0160895
chr16	81459615	81459715	6405145	0	+	0.54	(0.515,0.57]	chr16	615026	137	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8	protein_coding	protein_coding	protein_coding	protein_coding	1	44	2	2.76354	4.036375	5.30921	0.0147344	1.98811e-4	0.0983813	0.0122787
chr7	75509840	75509938	3558958	0	-	0.316327	(0.28,0.32]	chr7	331568	16	INTRON	INTRON	PMS2P3	ENSG00000127957.19	ENST00000693762.1:ENST00000394921.8:ENST00000430602.5:ENST00000418756.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	1	57	2	2.62686	4.036345	5.44583	0.0289217	5.8721e-4	0.1274	0.0220073
chr12	104487810	104487910	5210992	0	+	0.29	(0.28,0.32]	chr12	493315	299	INTRON	INTRON	CHST11	ENSG00000171310.11	ENST00000303694.6:ENST00000547956.1:ENST00000549260.5:ENST00000546689.1	protein_coding	protein_coding	protein_coding	protein_coding	1	57	2	2.87382	4.0361199999999995	5.19842	0.014868	0.00152333	0.0989021	0.0360297
chr4	466785	466885	2092847	0	-	0.44	(0.408,0.44]	chr4	206783	220	INTRON	INTRON	ABCA11P:ZNF721	ENSG00000251595.7:ENSG00000182903.16	ENST00000451020.6:ENST00000514396.5:ENST00000507854.1:ENST00000515578.5:ENST00000506646.5:ENST00000507078.1:ENST00000511833.3:ENST00000338977.5:ENST00000505900.1	protein_coding	protein_coding	protein_coding:transcribed_processed_pseudogene	protein_coding:nonsense_mediated_decay:processed_transcript	3	73	2	2.30838	4.036075	5.76377	0.00547703	1.64089e-4	0.0671198	0.0116917
chr10	73020391	73020490	4647070	0	-	0.282828	(0.28,0.32]	chr10	427494	31	INTRON	INTRON	P4HA1	ENSG00000122884.13	ENST00000394890.7:ENST00000307116.6:ENST00000373008.6:ENST00000440381.5:ENST00000263556.3	protein_coding	protein_coding	protein_coding	protein_coding	1	52	2	3.02632	4.036055	5.04579	0.0071944	0.00714672	0.0756118	0.0723634
chr2	32521857	32521926	732499	0	+	0.318841	(0.28,0.32]	chr2	84595	1	SS5_PROX	SS5_PROX:INTRON	BIRC6	ENSG00000115760.15	ENST00000421745.7:ENST00000648282.1	protein_coding	protein_coding	protein_coding	protein_coding	1	52	2	3.02632	4.036055	5.04579	0.0071944	0.00714672	0.0756118	0.0723634
chr11	90217843	90217940	5016493	0	-	0.360825	(0.35,0.378]	chr11	473226	2	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	CHORDC1	ENSG00000110172.12	ENST00000320585.11:ENST00000457199.6:ENST00000533724.5:ENST00000525317.5:ENST00000533772.5:ENST00000530765.5:ENST00000533062.5:ENST00000529402.1:ENST00000533739.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	64	2	2.49643	4.036035	5.57564	0.00752974	5.93654e-4	0.0773151	0.0225024
chr16	15124791	15124891	6450671	0	-	0.44	(0.408,0.44]	chr16	621602	14	INTRON	INTRON	ENSG00000270580	ENSG00000270580.5	ENST00000605794.5:ENST00000340301.5	lncRNA	lncRNA	lncRNA	lncRNA	1	51	2	3.28852	4.036	4.78348	0.00290352	0.00287185	0.0494641	0.0474836
chr19	2118100	2118200	7115195	0	-	0.43	(0.408,0.44]	chr19	715188	1	SS5_PROX	SS5_PROX:INTRON	AP3D1	ENSG00000065000.19	ENST00000643116.3:ENST00000345016.9:ENST00000644728.1:ENST00000591631.2:ENST00000586177.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	51	2	3.28852	4.036	4.78348	0.00290352	0.00287185	0.0494641	0.0474836
chr1	22085938	22086038	42546	0	+	0.46	(0.44,0.476]	chr1	5117	1	SS3_PROX	SS3_PROX:INTRON	ENSG00000289694:CDC42	ENSG00000289694.1:ENSG00000070831.18	ENST00000695855.1:ENST00000695856.1:ENST00000344548.8:ENST00000400259.5:ENST00000667384.2:ENST00000411827.2:ENST00000695858.1:ENST00000695857.1:ENST00000315554.14:ENST00000695859.1:ENST00000498236.1:ENST00000656825.1:ENST00000651171.1:ENST00000652582.1:ENST00000695860.1:ENST00000695796.1:ENST00000695797.1:ENST00000662562.2:ENST00000695798.1:ENST00000695799.1:ENST00000695800.1:ENST00000695801.1:ENST00000695802.1:ENST00000695861.1:ENST00000695862.1:ENST00000695863.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	22	2	3.8344	4.035975	4.23755	0.041276	0.0263357	0.161534	0.122221
chr1	25487681	25487780	48524	0	+	0.444444	(0.44,0.476]	chr1	5963	15	INTRON	INTRON	MACO1	ENSG00000204178.11	ENST00000399766.7:ENST00000374343.5:ENST00000647928.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	22	2	3.8344	4.035975	4.23755	0.041276	0.0263357	0.161534	0.122221
chr10	70340052	70340152	4641638	0	-	0.47	(0.44,0.476]	chr10	426995	1	SS5_PROX	SS5_PROX:INTRON	LRRC20	ENSG00000172731.15	ENST00000395010.5:ENST00000395011.5:ENST00000373224.5:ENST00000355790.8:ENST00000446961.4:ENST00000357631.6:ENST00000358141.6	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.8344	4.035975	4.23755	0.041276	0.0263357	0.161534	0.122221
chr10	102452279	102452376	4514191	0	+	0.453608	(0.44,0.476]	chr10	415995	8	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	C10orf95-AS1	ENSG00000269609.6	ENST00000473970.3:ENST00000494270.7:ENST00000492465.2:ENST00000663480.1:ENST00000669625.1:ENST00000657934.1:ENST00000670059.1:ENST00000594818.1:ENST00000596366.1:ENST00000659211.1:ENST00000597488.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	0	22	2	3.8344	4.035975	4.23755	0.041276	0.0263357	0.161534	0.122221
chr12	82348603	82348703	5377792	0	-	0.47	(0.44,0.476]	chr12	512815	399	INTRON	INTRON	CCDC59	ENSG00000133773.12	ENST00000552377.5	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.8344	4.035975	4.23755	0.041276	0.0263357	0.161534	0.122221
chr12	133049637	133049733	5252697	0	+	0.46875	(0.44,0.476]	chr12	499676	4	INTRON	INTRON	ZNF84	ENSG00000198040.11	ENST00000392319.6:ENST00000543758.5:ENST00000540031.5:ENST00000539354.6:ENST00000327668.11:ENST00000542874.5:ENST00000535439.2:ENST00000543124.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	22	2	3.8344	4.035975	4.23755	0.041276	0.0263357	0.161534	0.122221
chr16	29795100	29795199	6335626	0	+	0.464646	(0.44,0.476]	chr16	606839	22	INTRON	INTRON	KIF22	ENSG00000079616.14	ENST00000690258.1:ENST00000691169.1:ENST00000689089.1:ENST00000689743.1:ENST00000685526.1:ENST00000563666.2:ENST00000691128.1:ENST00000691895.1:ENST00000685401.1:ENST00000689660.1:ENST00000569382.3:ENST00000689172.1:ENST00000686384.1:ENST00000691203.1:ENST00000160827.9:ENST00000693260.1:ENST00000690510.1:ENST00000569636.7:ENST00000570173.6:ENST00000690419.1:ENST00000689107.1:ENST00000561482.6:ENST00000400751.9:ENST00000563263.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	22	2	3.8344	4.035975	4.23755	0.041276	0.0263357	0.161534	0.122221
chr16	89991383	89991483	6423483	0	+	0.47	(0.44,0.476]	chr16	617031	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	AFG3L1P	ENSG00000223959.9	ENST00000429663.6:ENST00000418696.5:ENST00000690928.1:ENST00000436447.5:ENST00000457926.5:ENST00000688932.1:ENST00000685584.1:ENST00000437774.5:ENST00000557444.5:ENST00000388970.7:ENST00000458301.5:ENST00000355531.7:ENST00000427658.1	transcribed_unitary_pseudogene	retained_intron	transcribed_unitary_pseudogene	retained_intron:processed_transcript:transcribed_unitary_pseudogene	0	22	2	3.8344	4.035975	4.23755	0.041276	0.0263357	0.161534	0.122221
chr17	75057535	75057633	6673952	0	+	0.44898	(0.44,0.476]	chr17	651293	41	INTRON	INTRON	KCTD2	ENSG00000180901.11	ENST00000581589.5:ENST00000375286.7:ENST00000322444.7:ENST00000577516.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	22	2	3.8344	4.035975	4.23755	0.041276	0.0263357	0.161534	0.122221
chr18	9262596	9262695	6870204	0	+	0.444444	(0.44,0.476]	chr18	680630	33	INTRON	INTRON	ANKRD12	ENSG00000101745.17	ENST00000262126.9:ENST00000400020.7	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.8344	4.035975	4.23755	0.041276	0.0263357	0.161534	0.122221
chr18	9862257	9862355	6873335	0	+	0.459184	(0.44,0.476]	chr18	680854	31	UTR3	UTR3:EXON_MRNA	RAB31	ENSG00000168461.13	ENST00000578921.6	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.8344	4.035975	4.23755	0.041276	0.0263357	0.161534	0.122221
chr18	36805699	36805796	6964142	0	-	0.463918	(0.44,0.476]	chr18	689233	2	SS3_PROX	SS3_PROX:INTRON	TPGS2	ENSG00000134779.15	ENST00000614939.4:ENST00000587129.5:ENST00000610723.4:ENST00000590842.5:ENST00000591906.5:ENST00000587382.5:ENST00000334295.9:ENST00000383056.7:ENST00000593035.5:ENST00000590500.5:ENST00000589049.5:ENST00000591823.5:ENST00000585635.5:ENST00000590692.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	22	2	3.8344	4.035975	4.23755	0.041276	0.0263357	0.161534	0.122221
chr19	6781143	6781242	7006885	0	+	0.454545	(0.44,0.476]	chr19	695290	78	INTRON	INTRON	VAV1	ENSG00000141968.8	ENST00000602142.6:ENST00000304076.6:ENST00000596764.5	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.8344	4.035975	4.23755	0.041276	0.0263357	0.161534	0.122221
chr19	50385481	50385580	7092688	0	+	0.444444	(0.44,0.476]	chr19	710757	7	INTRON	INTRON	POLD1	ENSG00000062822.16	ENST00000600859.5:ENST00000600746.2:ENST00000599857.7:ENST00000613923.6:ENST00000601098.6:ENST00000643407.1:ENST00000440232.7:ENST00000595904.6:ENST00000593887.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	22	2	3.8344	4.035975	4.23755	0.041276	0.0263357	0.161534	0.122221
chr2	45597351	45597451	1113220	0	-	0.46	(0.44,0.476]	chr2	119361	112	INTRON	INTRON	SRBD1	ENSG00000068784.13	ENST00000263736.5	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.8344	4.035975	4.23755	0.041276	0.0263357	0.161534	0.122221
chr2	240562065	240562164	1052856	0	+	0.464646	(0.44,0.476]	chr2	112017	7	UTR3	UTR3:EXON_MRNA:INTRON	DUSP28	ENSG00000188542.10	ENST00000343217.6:ENST00000405954.2:ENST00000438823.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	22	2	3.8344	4.035975	4.23755	0.041276	0.0263357	0.161534	0.122221
chr22	41810491	41810591	7525777	0	+	0.46	(0.44,0.476]	chr22	769332	2	SS5_PROX	SS5_PROX:INTRON	CCDC134	ENSG00000100147.14	ENST00000255784.6:ENST00000402061.7	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.8344	4.035975	4.23755	0.041276	0.0263357	0.161534	0.122221
chr3	40467792	40467891	1402010	0	+	0.464646	(0.44,0.476]	chr3	147280	57	UTR3	UTR3:EXON_MRNA	RPL14	ENSG00000188846.14	ENST00000338970.10:ENST00000396203.7	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.8344	4.035975	4.23755	0.041276	0.0263357	0.161534	0.122221
chr3	71470665	71470764	1744026	0	-	0.464646	(0.44,0.476]	chr3	177329	12	INTRON	INTRON	FOXP1	ENSG00000114861.24	ENST00000318789.11:ENST00000649528.3:ENST00000615603.5:ENST00000493089.7:ENST00000649596.1:ENST00000648710.2:ENST00000327590.9:ENST00000648321.1:ENST00000649610.2:ENST00000648718.1:ENST00000649631.1:ENST00000648384.1:ENST00000648380.1:ENST00000650068.2:ENST00000650295.1:ENST00000648895.1:ENST00000318779.7:ENST00000471386.3:ENST00000650156.1:ENST00000649133.1:ENST00000648192.1:ENST00000649328.1:ENST00000649175.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	22	2	3.8344	4.035975	4.23755	0.041276	0.0263357	0.161534	0.122221
chr6	111009821	111009920	2939583	0	+	0.454545	(0.44,0.476]	chr6	276877	13	INTRON	INTRON	RPF2	ENSG00000197498.13	ENST00000368864.8:ENST00000441448.7:ENST00000607388.1:ENST00000425871.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	22	2	3.8344	4.035975	4.23755	0.041276	0.0263357	0.161534	0.122221
chr7	127733697	127733797	3403227	0	+	0.46	(0.44,0.476]	chr7	318134	119	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000468166.5:ENST00000465900.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	22	2	3.8344	4.035975	4.23755	0.041276	0.0263357	0.161534	0.122221
chr9	27417693	27417793	4239003	0	-	0.46	(0.44,0.476]	chr9	389669	581	INTRON	INTRON	MOB3B	ENSG00000120162.10	ENST00000262244.6:ENST00000603061.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	22	2	3.8344	4.035975	4.23755	0.041276	0.0263357	0.161534	0.122221
chrX	16739820	16739919	7626015	0	+	0.444444	(0.44,0.476]	chrX	780887	32	INTRON	INTRON	SYAP1	ENSG00000169895.6	ENST00000380155.4	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.8344	4.035975	4.23755	0.041276	0.0263357	0.161534	0.122221
chrX	24894916	24895016	7633744	0	+	0.46	(0.44,0.476]	chrX	781799	44	INTRON	INTRON	POLA1	ENSG00000101868.13	ENST00000672178.1:ENST00000379068.8:ENST00000379059.7:ENST00000611764.2:ENST00000679301.1:ENST00000677939.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	22	2	3.8344	4.035975	4.23755	0.041276	0.0263357	0.161534	0.122221
chr3	167700465	167700564	1853702	0	-	0.363636	(0.35,0.378]	chr3	186307	21	INTRON	INTRON	PDCD10	ENSG00000114209.15	ENST00000392750.7:ENST00000473645.6:ENST00000497056.6:ENST00000492396.5:ENST00000461494.5:ENST00000470131.5:ENST00000475915.6:ENST00000487947.6:ENST00000471885.5:ENST00000479121.5:ENST00000462725.6:ENST00000492139.5:ENST00000483451.5:ENST00000494502.6:ENST00000464360.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	67	2	3.08631	4.03596	4.98561	0.00474226	6.13845e-4	0.0600445	0.0223951
chr19	5606623	5606722	7124188	0	-	0.30303	(0.28,0.32]	chr19	717006	13	INTRON	INTRON	SAFB2	ENSG00000130254.12	ENST00000252542.9:ENST00000591123.5:ENST00000592599.5:ENST00000591101.5:ENST00000591310.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	52	2	2.91832	4.03595	5.15358	0.0102484	0.0052282	0.089002	0.0633615
chr2	86954938	86955036	824548	0	+	0.306122	(0.28,0.32]	chr2	92127	9	INTRON	INTRON	RGPD1	ENSG00000187627.17	ENST00000409776.6:ENST00000398193.8:ENST00000641458.2	protein_coding	protein_coding	protein_coding	protein_coding	1	52	2	2.91832	4.03595	5.15358	0.0102484	0.0052282	0.089002	0.0633615
chr2	169698086	169698186	907104	0	+	0.31	(0.28,0.32]	chr2	100105	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PHOSPHO2:KLHL23	ENSG00000144362.12:ENSG00000213160.10	ENST00000616481.4:ENST00000616524.4:ENST00000617738.4:ENST00000359744.8:ENST00000438710.5:ENST00000438838.5:ENST00000449906.5:ENST00000498202.6:ENST00000272797.8:ENST00000476919.1:ENST00000602521.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	52	2	2.91832	4.03595	5.15358	0.0102484	0.0052282	0.089002	0.0633615
chr1	235124351	235124449	661793	0	-	0.357143	(0.35,0.378]	chr1	78339	16	INTRON	INTRON	TOMM20	ENSG00000173726.11	ENST00000366607.5	protein_coding	protein_coding	protein_coding	protein_coding	4	175	2	3.30724	4.035880000000001	4.76452	3.81522e-5	2.75048e-6	0.00496391	0.00117563
chr4	75767953	75768052	1974947	0	+	0.323232	(0.32,0.35]	chr4	197955	70	INTRON	INTRON	USO1	ENSG00000138768.15	ENST00000514213.7:ENST00000264904.8	protein_coding	protein_coding	protein_coding	protein_coding	2	67	2	2.78706	4.03578	5.2845	0.00253645	0.00240071	0.0465056	0.0440612
chr8	54084065	54084164	3953700	0	-	0.333333	(0.32,0.35]	chr8	362624	179	INTRON	INTRON	LYPLA1	ENSG00000120992.18	ENST00000316963.8:ENST00000618914.4:ENST00000618741.1:ENST00000343231.10:ENST00000519272.5:ENST00000518546.5:ENST00000522007.5:ENST00000519891.5:ENST00000521352.5:ENST00000521898.5:ENST00000519926.5:ENST00000517297.5:ENST00000520896.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	73	2	2.46027	4.035755	5.61124	0.0108973	1.88018e-4	0.0873034	0.011951
chr8	123261796	123261896	4041696	0	-	0.22	[0,0.28]	chr8	368617	42	INTRON	INTRON	ZHX1-C8orf76:ZHX1	ENSG00000259305.6:ENSG00000165156.15	ENST00000357082.8:ENST00000622816.2:ENST00000297857.3:ENST00000395571.8:ENST00000517516.1:ENST00000522655.5:ENST00000522595.5:ENST00000524267.5:ENST00000480132.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	62	2	2.54624	4.035715	5.52519	0.0388449	8.21427e-4	0.143072	0.0261674
chr6	117691244	117691344	2946956	0	+	0.34	(0.32,0.35]	chr6	277395	148	INTRON	INTRON	NUS1	ENSG00000153989.8	ENST00000368494.4	protein_coding	protein_coding	protein_coding	protein_coding	1	54	2	3.61507	4.03568	4.45629	0.0246089	6.48785e-4	0.12011	0.0230814
chr10	30329725	30329825	4587446	0	-	0.4	(0.378,0.408]	chr10	422969	27	INTRON	INTRON	MTPAP	ENSG00000107951.15	ENST00000263063.9:ENST00000488290.5:ENST00000417581.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	22	2	3.96471	4.03566	4.10661	0.0399023	0.032421	0.145026	0.143072
chr10	43611335	43611434	4429568	0	+	0.393939	(0.378,0.408]	chr10	408270	16	INTRON	INTRON	ZNF485	ENSG00000198298.13	ENST00000430885.5:ENST00000374435.3:ENST00000361807.8	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.96471	4.03566	4.10661	0.0399023	0.032421	0.145026	0.143072
chr10	49105726	49105824	4613604	0	-	0.408163	(0.378,0.408]	chr10	424927	15	INTRON	INTRON	VSTM4	ENSG00000165633.13	ENST00000332853.9:ENST00000298454.3	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.96471	4.03566	4.10661	0.0399023	0.032421	0.145026	0.143072
chr10	69205812	69205910	4445336	0	+	0.408163	(0.378,0.408]	chr10	410148	24	INTRON	INTRON	SUPV3L1	ENSG00000156502.14	ENST00000359655.9	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.96471	4.03566	4.10661	0.0399023	0.032421	0.145026	0.143072
chr11	3374904	3374996	4893817	0	-	0.380435	(0.378,0.408]	chr11	458703	9	INTRON	INTRON	ZNF195	ENSG00000005801.18	ENST00000528796.5:ENST00000399602.9:ENST00000354599.10:ENST00000343338.11:ENST00000620374.4:ENST00000649622.1:ENST00000429541.6:ENST00000005082.13:ENST00000526601.5:ENST00000438262.6:ENST00000528410.5:ENST00000528218.5:ENST00000525313.6:ENST00000533036.5:ENST00000529678.5:ENST00000427810.6:ENST00000534569.5:ENST00000524857.5:ENST00000530643.5:ENST00000618467.4:ENST00000330692.11:ENST00000525502.5:ENST00000526501.5:ENST00000532539.1:ENST00000529085.5:ENST00000527386.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	22	2	3.96471	4.03566	4.10661	0.0399023	0.032421	0.145026	0.143072
chr11	77611014	77611114	4994059	0	-	0.39	(0.378,0.408]	chr11	471883	3	SS5_PROX	SS5_PROX:INTRON	CLNS1A	ENSG00000074201.9	ENST00000526761.5	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	0	22	2	3.96471	4.03566	4.10661	0.0399023	0.032421	0.145026	0.143072
chr13	45280845	45280945	5479888	0	+	0.39	(0.378,0.408]	chr13	524979	131	INTRON	INTRON	GTF2F2	ENSG00000188342.12	ENST00000340473.8	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.96471	4.03566	4.10661	0.0399023	0.032421	0.145026	0.143072
chr14	91116018	91116117	5805679	0	+	0.40404	(0.378,0.408]	chr14	550145	4	INTRON	INTRON	DGLUCY	ENSG00000133943.21	ENST00000521334.5:ENST00000522837.5:ENST00000518871.5:ENST00000520328.5:ENST00000521081.5:ENST00000524232.5:ENST00000522170.5:ENST00000256324.15:ENST00000519950.5:ENST00000523879.5:ENST00000521077.6:ENST00000518665.6:ENST00000519994.5:ENST00000523837.5:ENST00000518868.5:ENST00000518649.5:ENST00000519019.5:ENST00000523816.5:ENST00000517518.5:ENST00000428926.6:ENST00000517362.5:ENST00000523894.5:ENST00000522322.5:ENST00000523771.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	22	2	3.96471	4.03566	4.10661	0.0399023	0.032421	0.145026	0.143072
chr15	50665944	50666044	6173074	0	-	0.4	(0.378,0.408]	chr15	588397	25	INTRON	INTRON	TRPM7:ENSG00000288645	ENSG00000092439.16:ENSG00000288645.1	ENST00000646667.1:ENST00000560955.5:ENST00000676296.1	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.96471	4.03566	4.10661	0.0399023	0.032421	0.145026	0.143072
chr17	42328950	42329041	6772412	0	-	0.384615	(0.378,0.408]	chr17	667040	1	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	STAT3	ENSG00000168610.16	ENST00000264657.10:ENST00000678044.1:ENST00000678906.1:ENST00000678960.1:ENST00000679014.1:ENST00000678043.1:ENST00000677442.1:ENST00000677723.1:ENST00000679166.1:ENST00000678792.1:ENST00000678764.1:ENST00000678048.1:ENST00000678674.1:ENST00000678445.1:ENST00000678913.1:ENST00000677421.1:ENST00000679231.1:ENST00000677030.1:ENST00000678827.1:ENST00000679185.1:ENST00000677820.1:ENST00000678905.1:ENST00000677479.1:ENST00000676636.1:ENST00000678572.1:ENST00000677271.1:ENST00000677152.1:ENST00000677603.1:ENST00000677002.1:ENST00000585517.5:ENST00000678535.1:ENST00000677308.1:ENST00000389272.7:ENST00000588969.5:ENST00000677763.1:ENST00000404395.3:ENST00000678659.1:ENST00000678108.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	22	2	3.96471	4.03566	4.10661	0.0399023	0.032421	0.145026	0.143072
chr18	1340561	1340661	6941585	0	-	0.39	(0.378,0.408]	chr18	686579	166	INTRON	INTRON	LINC00470	ENSG00000132204.14	ENST00000657423.1:ENST00000657618.1:ENST00000584090.5:ENST00000660947.1:ENST00000669242.1:ENST00000660475.1:ENST00000653775.1:ENST00000661931.1:ENST00000412816.7:ENST00000577867.5:ENST00000584492.5:ENST00000667416.1:ENST00000661852.1:ENST00000657919.1:ENST00000661646.1:ENST00000667776.1:ENST00000654559.1:ENST00000661233.1:ENST00000653213.1:ENST00000659094.1:ENST00000660964.1:ENST00000577403.6:ENST00000660358.1:ENST00000669153.1:ENST00000657121.1:ENST00000655957.1:ENST00000659289.1:ENST00000665133.1:ENST00000671558.1:ENST00000666542.1:ENST00000663512.1:ENST00000582862.6:ENST00000578835.5:ENST00000669312.1:ENST00000581430.5:ENST00000581212.1:ENST00000658090.1	lncRNA	lncRNA	lncRNA	lncRNA	0	22	2	3.96471	4.03566	4.10661	0.0399023	0.032421	0.145026	0.143072
chr19	6093713	6093813	7126654	0	-	0.38	(0.378,0.408]	chr19	717530	150	INTRON	INTRON	RFX2	ENSG00000087903.13	ENST00000303657.10:ENST00000592546.5:ENST00000589742.5:ENST00000586806.1:ENST00000587321.1:ENST00000586302.5:ENST00000592172.5:ENST00000586940.1:ENST00000592473.5:ENST00000592883.5:ENST00000593241.5:ENST00000587181.1:ENST00000590822.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	22	2	3.96471	4.03566	4.10661	0.0399023	0.032421	0.145026	0.143072
chr19	19495553	19495653	7036256	0	+	0.38	(0.378,0.408]	chr19	701488	4	SS3_PROX	SS3_PROX:INTRON	GATAD2A	ENSG00000167491.18	ENST00000360315.7:ENST00000609040.5:ENST00000683918.1:ENST00000404158.5:ENST00000358713.7:ENST00000418032.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	22	2	3.96471	4.03566	4.10661	0.0399023	0.032421	0.145026	0.143072
chr2	46763528	46763628	771266	0	+	0.39	(0.378,0.408]	chr2	86986	5	INTRON	INTRON	SOCS5	ENSG00000171150.9	ENST00000650009.1	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.96471	4.03566	4.10661	0.0399023	0.032421	0.145026	0.143072
chr20	43670259	43670357	7276087	0	+	0.397959	(0.378,0.408]	chr20	739717	26	INTRON	INTRON	MYBL2	ENSG00000101057.16	ENST00000396863.8:ENST00000217026.5	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.96471	4.03566	4.10661	0.0399023	0.032421	0.145026	0.143072
chr20	62904898	62904997	7362230	0	-	0.393939	(0.378,0.408]	chr20	751176	76	INTRON	INTRON	DIDO1	ENSG00000101191.17	ENST00000266070.8:ENST00000395343.6:ENST00000395340.5	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.96471	4.03566	4.10661	0.0399023	0.032421	0.145026	0.143072
chr22	30939337	30939431	7577372	0	-	0.393617	(0.378,0.408]	chr22	775317	13	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	MORC2	ENSG00000133422.14	ENST00000397641.8:ENST00000215862.8:ENST00000675601.1:ENST00000676215.1:ENST00000674576.1:ENST00000469915.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	22	2	3.96471	4.03566	4.10661	0.0399023	0.032421	0.145026	0.143072
chr3	136511361	136511460	1826039	0	-	0.40404	(0.378,0.408]	chr3	183688	82	INTRON	INTRON	STAG1	ENSG00000118007.13	ENST00000383202.7:ENST00000236698.9:ENST00000434713.6:ENST00000483235.5:ENST00000629124.2:ENST00000487065.5:ENST00000462818.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	22	2	3.96471	4.03566	4.10661	0.0399023	0.032421	0.145026	0.143072
chr5	1572686	1572786	2565715	0	-	0.38	(0.378,0.408]	chr5	245754	4	SS3_PROX	SS3_PROX:INTRON	SDHAP3	ENSG00000185986.13	ENST00000652578.1:ENST00000684972.1:ENST00000690867.1:ENST00000689786.1:ENST00000515467.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	22	2	3.96471	4.03566	4.10661	0.0399023	0.032421	0.145026	0.143072
chr5	105130903	105131003	2693735	0	-	0.38	(0.378,0.408]	chr5	254244	1216	INTRON	INTRON	ENSG00000251574:ENSG00000253584	ENSG00000251574.8:ENSG00000253584.1	ENST00000503650.1:ENST00000522464.1	lncRNA	lncRNA	lncRNA	lncRNA	0	22	2	3.96471	4.03566	4.10661	0.0399023	0.032421	0.145026	0.143072
chr6	147233649	147233749	2989000	0	+	0.38	(0.378,0.408]	chr6	280001	272	INTRON	INTRON	STXBP5	ENSG00000164506.15	ENST00000321680.11:ENST00000367481.7:ENST00000546097.5:ENST00000367480.7	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.96471	4.03566	4.10661	0.0399023	0.032421	0.145026	0.143072
chr7	103146461	103146561	3592869	0	-	0.39	(0.378,0.408]	chr7	335302	173	INTRON	INTRON	NAPEPLD	ENSG00000161048.12	ENST00000341533.8:ENST00000465647.6:ENST00000417955.5:ENST00000422589.5:ENST00000427257.5:ENST00000418294.1:ENST00000479761.1:ENST00000425379.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	22	2	3.96471	4.03566	4.10661	0.0399023	0.032421	0.145026	0.143072
chr8	43021573	43021673	3745530	0	+	0.38	(0.378,0.408]	chr8	348501	32	UTR3	UTR3:EXON_MRNA:INTRON	HOOK3	ENSG00000168172.9	ENST00000307602.9:ENST00000533338.1	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.96471	4.03566	4.10661	0.0399023	0.032421	0.145026	0.143072
chr8	61709283	61709382	3959063	0	-	0.383838	(0.378,0.408]	chr8	363195	196	INTRON	INTRON	ASPH	ENSG00000198363.18	ENST00000379454.9:ENST00000445642.6:ENST00000356457.9:ENST00000519234.5:ENST00000518068.5:ENST00000517856.5:ENST00000379449.10	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.96471	4.03566	4.10661	0.0399023	0.032421	0.145026	0.143072
chr8	128019614	128019714	3862330	0	+	0.4	(0.378,0.408]	chr8	355521	25	INTRON	INTRON	PVT1	ENSG00000249859.13	ENST00000667305.1:ENST00000690350.1:ENST00000653522.1:ENST00000661830.1:ENST00000657289.1:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000657211.1:ENST00000653845.1:ENST00000651587.1:ENST00000692980.1:ENST00000654324.1:ENST00000657693.1:ENST00000666080.1:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000662410.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000657356.1:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000667714.1:ENST00000654105.1:ENST00000664995.1:ENST00000670714.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000668123.1:ENST00000666776.1:ENST00000659912.1:ENST00000670532.1:ENST00000523068.2:ENST00000671088.1:ENST00000663461.1:ENST00000513868.6:ENST00000692433.1:ENST00000523190.7:ENST00000685606.1:ENST00000690788.1:ENST00000685634.1:ENST00000653990.1:ENST00000655783.1:ENST00000656411.1:ENST00000664742.1:ENST00000655099.1:ENST00000662709.1:ENST00000512617.7:ENST00000660122.1:ENST00000666452.1:ENST00000659666.1:ENST00000659892.1:ENST00000521600.5:ENST00000522875.5:ENST00000653497.1:ENST00000668098.1:ENST00000659106.1:ENST00000666147.1:ENST00000658350.1:ENST00000656999.1:ENST00000664610.1:ENST00000671092.1:ENST00000653853.1	lncRNA	lncRNA	lncRNA	lncRNA	0	22	2	3.96471	4.03566	4.10661	0.0399023	0.032421	0.145026	0.143072
chr9	108979681	108979781	4311189	0	-	0.38	(0.378,0.408]	chr9	396252	2	SS3_PROX	SS3_PROX:INTRON	CTNNAL1	ENSG00000119326.15	ENST00000374595.8:ENST00000325551.9	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.96471	4.03566	4.10661	0.0399023	0.032421	0.145026	0.143072
chr9	137585499	137585596	4377666	0	-	0.381443	(0.378,0.408]	chr9	403677	20	INTRON	INTRON	ZMYND19	ENSG00000165724.6	ENST00000298585.3	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.96471	4.03566	4.10661	0.0399023	0.032421	0.145026	0.143072
chrX	66173196	66173293	7672774	0	+	0.402062	(0.378,0.408]	chrX	785273	2	SS3_PROX	SS3_PROX:INTRON	HEPH	ENSG00000089472.18	ENST00000519389.6:ENST00000683049.1:ENST00000458621.6:ENST00000684042.1:ENST00000343002.7:ENST00000336279.9:ENST00000441993.7:ENST00000419594.6:ENST00000682362.1:ENST00000425114.2:ENST00000682927.1:ENST00000683420.1:ENST00000684071.1:ENST00000684625.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	22	2	3.96471	4.03566	4.10661	0.0399023	0.032421	0.145026	0.143072
chr19	9674724	9674818	7133501	0	-	0.468085	(0.44,0.476]	chr19	718914	2	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	ZNF562	ENSG00000171466.10	ENST00000453372.7:ENST00000293648.8:ENST00000590155.5:ENST00000585688.5:ENST00000587392.5:ENST00000588653.5:ENST00000589542.1:ENST00000585350.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	48	2	2.58033	4.03565	5.49097	0.0247511	4.8612e-4	0.131869	0.0203841
chr1	11841585	11841683	25840	0	+	0.591837	(0.57,1]	chr1	2908	15	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	CLCN6	ENSG00000011021.23	ENST00000312413.10:ENST00000346436.11:ENST00000400892.3:ENST00000446542.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	40	2	2.73474	4.03541	5.33608	0.00241874	3.92497e-5	0.0454275	0.00533644
chr7	112459804	112459899	3381881	0	+	0.505263	(0.476,0.515]	chr7	316789	4	INTRON	INTRON	IFRD1	ENSG00000006652.15	ENST00000675578.1:ENST00000621379.4:ENST00000005558.8:ENST00000403825.8:ENST00000674915.1:ENST00000674887.1:ENST00000675041.1:ENST00000675717.1:ENST00000535603.5:ENST00000466459.5:ENST00000486688.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	61	2	2.81076	4.035105	5.25945	0.00203568	0.00111445	0.0417667	0.0306328
chr3	57759448	57759548	1435667	0	+	0.51	(0.476,0.515]	chr3	151661	12	INTRON	INTRON	SLMAP	ENSG00000163681.16	ENST00000295951.7:ENST00000659926.1:ENST00000659705.1:ENST00000671191.1:ENST00000667800.1:ENST00000655012.1:ENST00000428312.6:ENST00000664084.1:ENST00000657480.1:ENST00000467901.1:ENST00000295952.7:ENST00000383718.7:ENST00000449503.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	61	2	2.48551	4.03488	5.58425	0.00756632	2.97744e-4	0.0773151	0.0160246
chr1	2288701	2288800	2771	0	+	0.575758	(0.57,1]	chr1	557	403	INTRON	INTRON	SKI	ENSG00000157933.10	ENST00000378536.5:ENST00000508416.1:ENST00000478223.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	32	2	2.79889	4.03478	5.27067	0.0110274	5.68536e-5	0.0927187	0.00655354
chr20	47252925	47253025	7348462	0	-	0.42	(0.408,0.44]	chr20	749282	31	INTRON	INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000467200.6:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000468376.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	61	2	2.49983	4.03478	5.56973	0.00713527	3.81714e-4	0.0756118	0.0181283
chr7	105541955	105542049	3375784	0	+	0.308511	(0.28,0.32]	chr7	316056	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RINT1	ENSG00000135249.8	ENST00000467392.5:ENST00000482041.5:ENST00000493041.5:ENST00000257700.7:ENST00000497979.5:ENST00000477285.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	70	2	2.63379	4.034745	5.4357	0.00503861	0.00215368	0.0646039	0.0417866
chr6	159755699	159755788	3022681	0	+	0.191011	[0,0.28]	chr6	281936	2	UTR3	UTR3:EXON_MRNA	WTAP	ENSG00000146457.16	ENST00000358372.8:ENST00000650096.1:ENST00000621533.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	141	2	3.90364	4.034635	4.16563	5.45367e-4	7.75265e-5	0.0215432	0.00735438
chr2	32198326	32198425	730116	0	+	0.363636	(0.35,0.378]	chr2	84208	1	INTRON	INTRON	SLC30A6	ENSG00000152683.14	ENST00000357055.7:ENST00000435660.5:ENST00000282587.9:ENST00000449777.5:ENST00000454324.5:ENST00000379343.6:ENST00000406369.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	53	2	2.47065	4.03456	5.59847	0.0386172	1.39739e-4	0.142656	0.0101825
chr4	47863613	47863712	2134797	0	-	0.393939	(0.378,0.408]	chr4	210399	3	INTRON	INTRON	NFXL1	ENSG00000170448.12	ENST00000329043.7:ENST00000464756.6:ENST00000381538.7:ENST00000507489.2:ENST00000502448.5:ENST00000507131.5:ENST00000508115.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	47	2	3.33026	4.034325	4.73839	0.00837252	0.00189824	0.0774402	0.0402736
chr5	56844715	56844814	2357336	0	+	0.393939	(0.378,0.408]	chr5	227407	283	INTRON	INTRON	MAP3K1	ENSG00000095015.6	ENST00000399503.4	protein_coding	protein_coding	protein_coding	protein_coding	1	51	2	2.53503	4.03401	5.53299	0.0319942	1.47095e-4	0.13174	0.0105341
chr1	96813603	96813703	168879	0	+	0.24	[0,0.28]	chr1	18274	3	UTR3	UTR3:EXON_MRNA	PTBP2	ENSG00000117569.19	ENST00000482253.5:ENST00000675735.1:ENST00000609116.5:ENST00000674951.1:ENST00000675080.1:ENST00000426398.3:ENST00000370197.5:ENST00000370198.5:ENST00000676292.1:ENST00000675365.1:ENST00000674579.1:ENST00000675401.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	156	2	1.6089	4.033865	6.45883	0.0142618	1.03895e-4	0.103838	0.00915599
chr1	28568208	28568307	57706	0	+	0.363636	(0.35,0.378]	chr1	7489	4	INTRON	INTRON	TRNAU1AP	ENSG00000180098.9	ENST00000373830.4:ENST00000480930.5:ENST00000491577.5:ENST00000484775.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	53	2	3.17244	4.033835	4.89523	0.00487788	0.00253947	0.0607461	0.0465056
chr10	69328837	69328936	4445976	0	+	0.252525	[0,0.28]	chr10	410222	93	INTRON	INTRON	HK1	ENSG00000156515.24	ENST00000436817.6:ENST00000360289.6:ENST00000448642.6:ENST00000480047.5:ENST00000450646.6:ENST00000483077.5:ENST00000464803.6:ENST00000476368.6:ENST00000643399.2:ENST00000483054.5:ENST00000421088.5:ENST00000298649.8:ENST00000359426.7:ENST00000493591.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	57	2	3.18138	4.033815000000001	4.88625	0.0173315	0.00487606	0.104099	0.0640618
chr8	105706432	105706532	3841133	0	+	0.25	[0,0.28]	chr8	354098	151	INTRON	INTRON	ZFPM2	ENSG00000169946.14	ENST00000407775.7:ENST00000520492.5:ENST00000511341.6:ENST00000517361.1:ENST00000522296.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	56	2	2.95729	4.03381	5.11033	0.0101824	0.00991388	0.089002	0.0838372
chr18	9178089	9178188	6869344	0	+	0.272727	[0,0.28]	chr18	680561	399	INTRON	INTRON	ANKRD12	ENSG00000101745.17	ENST00000585234.5:ENST00000262126.9:ENST00000577992.1:ENST00000540578.6:ENST00000581635.5:ENST00000400020.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	56	2	2.8569	4.03372	5.21054	0.013822	0.00758653	0.10247	0.0749063
chr17	3822375	3822456	6707961	0	-	0.382716	(0.378,0.408]	chr17	656996	5	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	NCBP3	ENSG00000074356.17	ENST00000389005.6:ENST00000574911.5:ENST00000575815.5:ENST00000574379.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	63	2	2.94613	4.033704999999999	5.12128	0.00251746	0.00112461	0.0446195	0.0308177
chr22	41898050	41898148	7526667	0	+	0.367347	(0.35,0.378]	chr22	769447	5	INTRON	INTRON	SREBF2	ENSG00000198911.12	ENST00000612482.4:ENST00000361204.9:ENST00000424354.5:ENST00000491541.1:ENST00000463741.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	52	2	2.60341	4.033675	5.46394	0.0275785	2.60035e-4	0.123904	0.014326
chr21	39267607	39267707	7465071	0	-	0.27	[0,0.28]	chr21	760508	22	INTRON	INTRON	BRWD1	ENSG00000185658.14	ENST00000333229.6:ENST00000342449.8:ENST00000380800.7:ENST00000430093.5:ENST00000445245.5:ENST00000445668.5:ENST00000412604.1:ENST00000455867.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	60	2	3.44611	4.033475	4.62084	0.0313633	0.00185186	0.13151	0.039946
chr3	42041711	42041811	1403939	0	+	0.3	(0.28,0.32]	chr3	147497	272	INTRON	INTRON	TRAK1	ENSG00000182606.17	ENST00000487159.5:ENST00000672026.1:ENST00000673621.2	protein_coding	protein_coding	protein_coding	protein_coding	1	53	2	2.67453	4.033440000000001	5.39235	0.021289	0.0024844	0.123318	0.0446195
chr10	74108470	74108570	4455629	0	+	0.48	(0.476,0.515]	chr10	411492	1	SS3_PROX	SS3_PROX:INTRON	VCL	ENSG00000035403.18	ENST00000623461.3:ENST00000372755.7:ENST00000624354.3:ENST00000211998.10:ENST00000472585.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	46	2	2.80729	4.03337	5.25945	0.0126008	0.00111445	0.0980703	0.0306328
chr2	111329714	111329814	1210141	0	-	0.5	(0.476,0.515]	chr2	128860	1	SS5_PROX	SS5_PROX:INTRON	MIR4435-2HG	ENSG00000172965.17	ENST00000645030.2:ENST00000642191.1:ENST00000673798.1:ENST00000645051.2:ENST00000673649.1:ENST00000673962.1:ENST00000674132.1:ENST00000669658.1:ENST00000669917.1:ENST00000661559.1:ENST00000653687.1:ENST00000667670.1:ENST00000609220.2:ENST00000656760.1:ENST00000609902.6:ENST00000666683.1:ENST00000674070.1:ENST00000662335.1:ENST00000664422.1:ENST00000673775.1:ENST00000662889.1:ENST00000665096.1:ENST00000674092.1:ENST00000673958.1:ENST00000673770.1:ENST00000673961.1:ENST00000658936.1:ENST00000662635.1:ENST00000666204.1:ENST00000659458.1:ENST00000664443.1:ENST00000670295.1:ENST00000661655.1:ENST00000666390.1:ENST00000659079.1:ENST00000660442.1:ENST00000664009.1:ENST00000439362.6:ENST00000654473.1:ENST00000664999.1:ENST00000673728.1:ENST00000659791.1:ENST00000666144.1:ENST00000659933.1:ENST00000670715.1:ENST00000656303.1:ENST00000666367.1:ENST00000666652.1:ENST00000669050.1:ENST00000667218.1:ENST00000656067.1:ENST00000653568.1:ENST00000643013.1:ENST00000673866.1:ENST00000673700.1:ENST00000443467.6:ENST00000451884.6:ENST00000669875.1:ENST00000673653.1:ENST00000673988.1:ENST00000661945.1:ENST00000669515.1:ENST00000431385.6:ENST00000655573.1:ENST00000656416.1:ENST00000662384.1:ENST00000674037.1:ENST00000432818.5:ENST00000674013.1:ENST00000673843.1:ENST00000661707.1:ENST00000444301.5:ENST00000673964.1:ENST00000673959.1:ENST00000673845.1	lncRNA	lncRNA	lncRNA	lncRNA	1	48	2	2.8863	4.033345	5.18039	0.0111679	6.58744e-4	0.0877435	0.0232396
chr16	8962512	8962612	6442745	0	-	0.6	(0.57,1]	chr16	620601	1	UTR5	UTR5:EXON_MRNA:INTRON	USP7	ENSG00000187555.16	ENST00000673704.1:ENST00000344836.9:ENST00000563961.5:ENST00000569230.5:ENST00000566273.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	33	2	2.66801	4.033335	5.39866	0.0169968	2.7267e-5	0.110899	0.00430583
chr2	208267514	208267614	992010	0	+	0.58	(0.57,1]	chr2	106587	7	INTRON	INTRON	PIKFYVE	ENSG00000115020.17	ENST00000264380.9:ENST00000443896.5:ENST00000392202.7:ENST00000407449.5:ENST00000308862.10:ENST00000422495.5:ENST00000452564.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	33	2	2.66801	4.033335	5.39866	0.0169968	2.7267e-5	0.110899	0.00430583
chr7	72886547	72886647	3329861	0	+	0.28	[0,0.28]	chr7	309555	63	INTRON	INTRON	POM121	ENSG00000196313.13	ENST00000627934.3:ENST00000395270.5	protein_coding	protein_coding	protein_coding	protein_coding	1	57	2	2.63238	4.03333	5.43428	0.0259691	0.00400834	0.133676	0.0551303
chr1	213124072	213124171	311434	0	+	0.434343	(0.408,0.44]	chr1	35931	63	INTRON	INTRON	RPS6KC1	ENSG00000136643.12	ENST00000615329.4:ENST00000543354.5:ENST00000614059.4:ENST00000543470.5:ENST00000366960.8:ENST00000366959.4:ENST00000490299.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	46	2	3.31257	4.033275	4.75398	0.00703931	0.00198621	0.0718189	0.0411469
chr8	27331380	27331480	3719843	0	+	0.45	(0.44,0.476]	chr8	345640	41	INTRON	INTRON	PTK2B	ENSG00000120899.18	ENST00000397501.5:ENST00000522338.5:ENST00000521164.5:ENST00000346049.10:ENST00000420218.3:ENST00000522517.5	protein_coding	protein_coding	protein_coding	protein_coding	2	62	2	2.33272	4.033275	5.73383	0.0129984	1.70474e-4	0.0991656	0.0119761
chr7	140869599	140869699	3663182	0	-	0.4	(0.378,0.408]	chr7	340105	190	INTRON	INTRON	BRAF	ENSG00000157764.14	ENST00000496384.7:ENST00000644969.2:ENST00000646891.1:ENST00000644905.1:ENST00000642228.1:ENST00000288602.11:ENST00000646730.1:ENST00000497784.2:ENST00000642272.1:ENST00000642808.1:ENST00000643790.1:ENST00000469930.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	63	2	2.35527	4.033189999999999	5.71111	0.0121511	2.59738e-4	0.0963966	0.0148796
chr4	55961317	55961416	1961858	0	+	0.343434	(0.32,0.35]	chr4	196747	5	INTRON	INTRON	CEP135	ENSG00000174799.11	ENST00000257287.5:ENST00000515081.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	50	2	3.23331	4.03309	4.83287	0.0095071	0.00315414	0.0817766	0.0515261
chr1	212769472	212769572	634557	0	-	0.32	(0.28,0.32]	chr1	74955	28	INTRON	INTRON	NSL1	ENSG00000117697.15	ENST00000366977.8:ENST00000366978.5:ENST00000366976.3:ENST00000626725.1	protein_coding	protein_coding	protein_coding	protein_coding	1	52	2	3.07744	4.03308	4.98872	0.00838468	0.00604536	0.0774402	0.0700813
chr22	19056286	19056385	7551341	0	-	0.494949	(0.476,0.515]	chr22	771857	73	INTRON	INTRON	DGCR2	ENSG00000070413.20	ENST00000537045.5:ENST00000545799.5:ENST00000263196.12:ENST00000389262.8:ENST00000467659.1:ENST00000608548.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	74	2	2.11679	4.03308	5.94937	0.0115627	5.50774e-5	0.0962115	0.0065165
chr1	39026602	39026702	74555	0	+	0.41	(0.408,0.44]	chr1	9653	2	SS5_PROX	SS5_PROX:INTRON	NDUFS5	ENSG00000168653.11	ENST00000372967.3:ENST00000372969.8	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.83494	4.03295	4.23096	0.0411442	0.0278028	0.161534	0.123904
chr1	211801882	211801982	631119	0	-	0.42	(0.408,0.44]	chr1	74654	83	INTRON	INTRON	LPGAT1	ENSG00000123684.13	ENST00000366997.9:ENST00000366996.1	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.83494	4.03295	4.23096	0.0411442	0.0278028	0.161534	0.123904
chr1	227150156	227150255	650031	0	-	0.424242	(0.408,0.44]	chr1	77072	22	INTRON	INTRON	CDC42BPA	ENSG00000143776.20	ENST00000366766.8:ENST00000366769.7:ENST00000334218.9:ENST00000366767.7:ENST00000366764.8	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.83494	4.03295	4.23096	0.0411442	0.0278028	0.161534	0.123904
chr1	246624622	246624722	350569	0	+	0.41	(0.408,0.44]	chr1	40508	26	INTRON	INTRON	CNST	ENSG00000162852.14	ENST00000483271.1:ENST00000366513.9:ENST00000366512.7:ENST00000366511.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	22	2	3.83494	4.03295	4.23096	0.0411442	0.0278028	0.161534	0.123904
chr11	68745311	68745411	4973722	0	-	0.41	(0.408,0.44]	chr11	469615	2	SS3_PROX	SS3_PROX:INTRON	TESMIN	ENSG00000132749.11	ENST00000255087.10:ENST00000540869.5:ENST00000443940.6:ENST00000544963.1:ENST00000538944.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	22	2	3.83494	4.03295	4.23096	0.0411442	0.0278028	0.161534	0.123904
chr11	75330822	75330922	4989949	0	-	0.44	(0.408,0.44]	chr11	471494	188	INTRON	INTRON	ARRB1	ENSG00000137486.17	ENST00000420843.7:ENST00000360025.7:ENST00000533255.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	22	2	3.83494	4.03295	4.23096	0.0411442	0.0278028	0.161534	0.123904
chr12	64641723	64641823	5155310	0	+	0.44	(0.408,0.44]	chr12	488093	302	INTRON	INTRON	RASSF3	ENSG00000153179.13	ENST00000637125.1:ENST00000542104.6:ENST00000283172.8:ENST00000336061.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	22	2	3.83494	4.03295	4.23096	0.0411442	0.0278028	0.161534	0.123904
chr12	110459694	110459778	5409762	0	-	0.428571	(0.408,0.44]	chr12	516537	1	CDS	CDS:EXON_MRNA	GPN3	ENSG00000111231.9	ENST00000228827.8:ENST00000543199.5:ENST00000537466.6:ENST00000550228.5:ENST00000550974.1	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.83494	4.03295	4.23096	0.0411442	0.0278028	0.161534	0.123904
chr15	75452401	75452494	6224085	0	-	0.430108	(0.408,0.44]	chr15	594544	8	INTRON	INTRON	SIN3A	ENSG00000169375.16	ENST00000360439.8:ENST00000564778.5:ENST00000562776.5:ENST00000568431.5:ENST00000570115.5:ENST00000568309.5:ENST00000568190.1	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.83494	4.03295	4.23096	0.0411442	0.0278028	0.161534	0.123904
chr16	21961965	21962040	6319627	0	+	0.44	(0.408,0.44]	chr16	604978	1	SS3_PROX	SS3_PROX:INTRON	UQCRC2	ENSG00000140740.11	ENST00000565464.5:ENST00000268379.9:ENST00000561553.5:ENST00000567757.1:ENST00000563898.5:ENST00000565331.5:ENST00000564095.5:ENST00000567597.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	22	2	3.83494	4.03295	4.23096	0.0411442	0.0278028	0.161534	0.123904
chr17	78394534	78394632	6682454	0	+	0.428571	(0.408,0.44]	chr17	652793	15	INTRON	INTRON	PGS1	ENSG00000087157.19	ENST00000262764.11:ENST00000589425.5:ENST00000586510.6:ENST00000586325.5:ENST00000589689.5:ENST00000589426.5:ENST00000588169.5:ENST00000592043.5:ENST00000587356.1:ENST00000585521.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	22	2	3.83494	4.03295	4.23096	0.0411442	0.0278028	0.161534	0.123904
chr19	16219651	16219750	7026794	0	+	0.434343	(0.408,0.44]	chr19	699349	89	INTRON	INTRON	AP1M1	ENSG00000072958.9	ENST00000590756.5:ENST00000291439.8:ENST00000429941.6:ENST00000444449.6:ENST00000591966.1:ENST00000586461.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	22	2	3.83494	4.03295	4.23096	0.0411442	0.0278028	0.161534	0.123904
chr2	70031661	70031759	1150687	0	-	0.438776	(0.408,0.44]	chr2	122851	18	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	PCBP1-AS1	ENSG00000179818.16	ENST00000419542.5:ENST00000682294.1:ENST00000684630.1:ENST00000630975.3:ENST00000435880.6:ENST00000629339.3:ENST00000667874.1:ENST00000628659.2:ENST00000628308.2:ENST00000626515.2:ENST00000625447.2:ENST00000628305.2:ENST00000625625.2:ENST00000625864.2:ENST00000630522.2:ENST00000628837.2:ENST00000627325.2:ENST00000629084.2:ENST00000629603.2:ENST00000625215.2:ENST00000627189.2:ENST00000629836.2:ENST00000626898.2:ENST00000628883.2:ENST00000629533.2:ENST00000627181.2:ENST00000630214.2:ENST00000627918.2:ENST00000628374.2:ENST00000627327.2:ENST00000626495.2:ENST00000629605.2:ENST00000626370.2:ENST00000626842.2:ENST00000630457.2:ENST00000629184.2:ENST00000628551.2:ENST00000630746.2:ENST00000627398.2:ENST00000457076.5:ENST00000625783.2:ENST00000625490.2:ENST00000627050.2:ENST00000630759.2:ENST00000628667.2:ENST00000626632.2:ENST00000631110.2:ENST00000626609.2:ENST00000629506.2:ENST00000630985.2:ENST00000413436.5:ENST00000628147.2:ENST00000631107.2:ENST00000629415.2:ENST00000418564.5:ENST00000630280.2:ENST00000415222.5:ENST00000628322.2:ENST00000626440.2:ENST00000628455.2:ENST00000665708.1:ENST00000655086.1:ENST00000420309.6:ENST00000627487.3:ENST00000670036.1:ENST00000655096.1:ENST00000685127.1:ENST00000684907.1:ENST00000685079.1:ENST00000687866.1:ENST00000692564.1:ENST00000686517.1:ENST00000689138.1:ENST00000688056.1:ENST00000594376.6:ENST00000692333.1:ENST00000688045.1:ENST00000657291.1:ENST00000691987.1:ENST00000664483.1:ENST00000601431.6:ENST00000685803.1:ENST00000690200.1:ENST00000686800.1:ENST00000684857.1:ENST00000627037.2:ENST00000629212.2:ENST00000688473.1:ENST00000456161.5:ENST00000627074.2:ENST00000419963.5:ENST00000625227.2:ENST00000599673.5:ENST00000629407.2:ENST00000612430.3:ENST00000418308.5:ENST00000630283.2:ENST00000629178.2:ENST00000627542.2:ENST00000626574.2:ENST00000596028.5:ENST00000629485.2:ENST00000630685.2:ENST00000452431.5:ENST00000629374.2:ENST00000423402.5:ENST00000411429.5:ENST00000629188.2:ENST00000434781.5:ENST00000626162.2:ENST00000654878.1:ENST00000659586.1:ENST00000457770.6:ENST00000415742.5:ENST00000627540.2:ENST00000628263.2:ENST00000657575.2:ENST00000689275.1:ENST00000687961.1:ENST00000693279.1:ENST00000416395.6:ENST00000692733.1:ENST00000654336.1:ENST00000686055.1:ENST00000626509.3:ENST00000425601.6:ENST00000666075.1:ENST00000653064.1:ENST00000656326.1:ENST00000668711.1:ENST00000665172.1:ENST00000630520.3:ENST00000663209.1:ENST00000659305.1:ENST00000654601.1:ENST00000663375.1:ENST00000654958.1:ENST00000665838.1:ENST00000653606.1:ENST00000659941.1:ENST00000669583.1:ENST00000660903.1:ENST00000653596.1:ENST00000656308.1:ENST00000449178.6:ENST00000625955.3:ENST00000655140.1:ENST00000661989.1:ENST00000664419.1:ENST00000670785.1:ENST00000664773.1:ENST00000661703.1:ENST00000658454.1:ENST00000664049.1:ENST00000655058.1:ENST00000366234.7:ENST00000599427.5:ENST00000597318.5:ENST00000625518.2:ENST00000425333.5	lncRNA	lncRNA	lncRNA	lncRNA	0	22	2	3.83494	4.03295	4.23096	0.0411442	0.0278028	0.161534	0.123904
chr2	119897031	119897131	857377	0	+	0.43	(0.408,0.44]	chr2	96222	108	INTRON	INTRON	PTPN4	ENSG00000088179.9	ENST00000263708.7:ENST00000433888.5:ENST00000430976.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	22	2	3.83494	4.03295	4.23096	0.0411442	0.0278028	0.161534	0.123904
chr2	240559767	240559859	1346691	0	-	0.434783	(0.408,0.44]	chr2	141277	8	INTRON	INTRON	ANKMY1	ENSG00000144504.16	ENST00000403283.5:ENST00000405002.5:ENST00000484526.5:ENST00000496300.5:ENST00000441168.5:ENST00000443318.1:ENST00000462004.5:ENST00000418708.3:ENST00000418505.3:ENST00000464991.5:ENST00000411765.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	22	2	3.83494	4.03295	4.23096	0.0411442	0.0278028	0.161534	0.123904
chr3	60512710	60512810	1714741	0	-	0.42	(0.408,0.44]	chr3	176138	4320	INTRON	INTRON	FHIT	ENSG00000189283.10	ENST00000492590.6:ENST00000476844.5:ENST00000468189.5:ENST00000488467.5	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.83494	4.03295	4.23096	0.0411442	0.0278028	0.161534	0.123904
chr3	81751005	81751105	1752063	0	-	0.44	(0.408,0.44]	chr3	177695	75	INTRON	INTRON	GBE1	ENSG00000114480.13	ENST00000429644.7	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.83494	4.03295	4.23096	0.0411442	0.0278028	0.161534	0.123904
chr5	139196928	139197028	2735447	0	-	0.41	(0.408,0.44]	chr5	257609	4	SS3_PROX	SS3_PROX:INTRON	SIL1	ENSG00000120725.13	ENST00000394817.7:ENST00000265195.9:ENST00000508639.5:ENST00000507002.5:ENST00000505830.5:ENST00000509400.5:ENST00000440765.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	22	2	3.83494	4.03295	4.23096	0.0411442	0.0278028	0.161534	0.123904
chr5	169842334	169842434	2543087	0	+	0.43	(0.408,0.44]	chr5	242782	9	INTRON	INTRON	DOCK2	ENSG00000134516.20	ENST00000520908.7:ENST00000522138.2:ENST00000524185.5:ENST00000519628.2:ENST00000523351.6:ENST00000520181.5:ENST00000696258.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	22	2	3.83494	4.03295	4.23096	0.0411442	0.0278028	0.161534	0.123904
chr6	53541199	53541299	3108661	0	-	0.43	(0.408,0.44]	chr6	291140	174	INTRON	INTRON	GCLC	ENSG00000001084.13	ENST00000650454.1:ENST00000616923.5:ENST00000643939.1:ENST00000513939.6:ENST00000504525.1:ENST00000514004.5:ENST00000505197.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	22	2	3.83494	4.03295	4.23096	0.0411442	0.0278028	0.161534	0.123904
chr7	119543297	119543397	3626769	0	-	0.44	(0.408,0.44]	chr7	337315	428	INTRON	INTRON	LINC02476	ENSG00000225546.6	ENST00000660268.1	lncRNA	lncRNA	lncRNA	lncRNA	0	22	2	3.83494	4.03295	4.23096	0.0411442	0.0278028	0.161534	0.123904
chr7	140787247	140787347	3662341	0	-	0.44	(0.408,0.44]	chr7	340046	3	SS5_PROX	SS5_PROX:INTRON	BRAF	ENSG00000157764.14	ENST00000496384.7:ENST00000644969.2:ENST00000644120.1:ENST00000642875.1:ENST00000646891.1:ENST00000644905.1:ENST00000642228.1:ENST00000288602.11:ENST00000646730.1:ENST00000644650.1:ENST00000647434.1:ENST00000497784.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	22	2	3.83494	4.03295	4.23096	0.0411442	0.0278028	0.161534	0.123904
chr9	4821750	4821850	4095154	0	+	0.42	(0.408,0.44]	chr9	373155	282	INTRON	INTRON	RCL1	ENSG00000120158.12	ENST00000381750.9:ENST00000381732.3:ENST00000442869.5:ENST00000473230.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	22	2	3.83494	4.03295	4.23096	0.0411442	0.0278028	0.161534	0.123904
chr9	120774319	120774417	4335268	0	-	0.418367	(0.408,0.44]	chr9	398235	11	INTRON	INTRON	FBXW2	ENSG00000119402.18	ENST00000493559.1:ENST00000684405.1:ENST00000684001.1:ENST00000684047.1:ENST00000608872.6:ENST00000453291.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	22	2	3.83494	4.03295	4.23096	0.0411442	0.0278028	0.161534	0.123904
chr16	28733829	28733924	6334144	0	+	0.410526	(0.408,0.44]	chr16	606469	13	INTRON	INTRON	EIF3C	ENSG00000184110.15	ENST00000566501.5:ENST00000395587.5:ENST00000331666.11:ENST00000564243.5:ENST00000566866.5:ENST00000565932.5:ENST00000569005.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	46	2	2.82042	4.032715	5.24501	0.0120121	0.00137378	0.0962115	0.0336718
chr19	52927708	52927804	7209096	0	-	0.416667	(0.408,0.44]	chr19	731741	7	EXON_LNCRNA	EXON_LNCRNA	ZNF321P	ENSG00000213801.4	ENST00000313956.4	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	1	46	2	2.82042	4.032715	5.24501	0.0120121	0.00137378	0.0962115	0.0336718
chr7	23396767	23396866	3502924	0	-	0.414141	(0.408,0.44]	chr7	326881	22	INTRON	INTRON	IGF2BP3	ENSG00000136231.14	ENST00000258729.8:ENST00000421467.6:ENST00000468263.5:ENST00000479504.5:ENST00000466809.6:ENST00000491719.5:ENST00000465058.5:ENST00000469723.5:ENST00000474105.5:ENST00000476938.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	46	2	2.82042	4.032715	5.24501	0.0120121	0.00137378	0.0962115	0.0336718
chr4	56443159	56443258	1962688	0	+	0.333333	(0.32,0.35]	chr4	196872	9	INTRON	INTRON	PAICS	ENSG00000128050.9	ENST00000514888.5:ENST00000264221.6:ENST00000505164.5:ENST00000399688.7:ENST00000512576.3	protein_coding	protein_coding	protein_coding	protein_coding	1	50	2	2.78073	4.032615	5.2845	0.01481	0.00240071	0.106702	0.0440612
chr1	30984431	30984531	412076	0	-	0.37	(0.35,0.378]	chr1	49701	24	INTRON	INTRON	PUM1	ENSG00000134644.16	ENST00000426105.7:ENST00000373747.7:ENST00000257075.9:ENST00000424085.6:ENST00000525843.5:ENST00000440538.6:ENST00000498419.5:ENST00000373741.8:ENST00000373742.6:ENST00000532678.1:ENST00000526215.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	50	2	3.49967	4.032585	4.5655	0.0155464	9.80974e-4	0.100909	0.0287765
chr10	124407389	124407476	4710718	0	-	0.356322	(0.35,0.378]	chr10	434714	2	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	OAT	ENSG00000065154.12	ENST00000539214.5:ENST00000368845.6:ENST00000467675.5:ENST00000476917.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	50	2	3.49967	4.032585	4.5655	0.0155464	9.80974e-4	0.100909	0.0287765
chr12	123218175	123218275	5443910	0	-	0.39	(0.378,0.408]	chr12	520845	4	SS5_PROX	SS5_PROX:INTRON	MPHOSPH9	ENSG00000051825.15	ENST00000606320.6:ENST00000541076.6:ENST00000545556.6:ENST00000302373.8:ENST00000539024.5:ENST00000539336.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	81	2	2.20712	4.032455	5.85779	0.00978751	2.83884e-5	0.0835427	0.00422437
chr17	42359504	42359604	6772737	0	-	0.3	(0.28,0.32]	chr17	667104	106	INTRON	INTRON	STAT3	ENSG00000168610.16	ENST00000264657.10:ENST00000678044.1:ENST00000678906.1:ENST00000678960.1:ENST00000679014.1:ENST00000678043.1:ENST00000677442.1:ENST00000677723.1:ENST00000679166.1:ENST00000678792.1:ENST00000678764.1:ENST00000678048.1:ENST00000678674.1:ENST00000678445.1:ENST00000678913.1:ENST00000677421.1:ENST00000679231.1:ENST00000677030.1:ENST00000678827.1:ENST00000679185.1:ENST00000677820.1:ENST00000678905.1:ENST00000677479.1:ENST00000676636.1:ENST00000678572.1:ENST00000677271.1:ENST00000677152.1:ENST00000677603.1:ENST00000585517.5:ENST00000678535.1:ENST00000677308.1:ENST00000389272.7:ENST00000588969.5:ENST00000677763.1:ENST00000404395.3:ENST00000678659.1:ENST00000678108.1:ENST00000678529.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	72	2	2.91124	4.03241	5.15358	0.0052282	0.00165124	0.0633615	0.0375241
chr16	30725617	30725709	6338935	0	+	0.5	(0.476,0.515]	chr16	607821	6	UTR3	UTR3:EXON_MRNA:INTRON	SRCAP	ENSG00000080603.17	ENST00000262518.9:ENST00000395059.6:ENST00000483083.3	protein_coding	protein_coding	protein_coding	protein_coding	1	48	2	2.82673	4.03221	5.23769	0.0134403	5.17244e-4	0.0946278	0.0203753
chr6	131651046	131651146	2960322	0	+	0.49	(0.476,0.515]	chr6	278282	5	INTRON	INTRON	ENPP3	ENSG00000154269.15	ENST00000427707.5:ENST00000414305.5:ENST00000357639.8:ENST00000358229.6:ENST00000423831.5:ENST00000470930.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	48	2	2.82673	4.03221	5.23769	0.0134403	5.17244e-4	0.0946278	0.0203753
chr1	150659817	150659917	551528	0	-	0.5	(0.476,0.515]	chr1	64814	107	INTRON	INTRON	GOLPH3L	ENSG00000143457.11	ENST00000271732.8:ENST00000427665.1	protein_coding	protein_coding	protein_coding	protein_coding	1	48	2	2.9435	4.03211	5.12072	0.00929849	8.42139e-4	0.0817766	0.0263691
chr7	75362388	75362488	3337686	0	+	0.51	(0.476,0.515]	chr7	310728	3	SS5_PROX	SS5_PROX:INTRON	STAG3L1	ENSG00000205583.14	ENST00000619870.4:ENST00000687422.1:ENST00000684904.1:ENST00000456374.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	1	48	2	2.9435	4.03211	5.12072	0.00929849	8.42139e-4	0.0817766	0.0263691
chr16	74568816	74568915	6524949	0	-	0.292929	(0.28,0.32]	chr16	631842	56	INTRON	INTRON	GLG1	ENSG00000090863.12	ENST00000205061.9:ENST00000422840.7:ENST00000447066.6:ENST00000562090.5:ENST00000567951.5:ENST00000627032.2:ENST00000565260.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	84	2	2.28714	4.0318000000000005	5.77646	0.00696126	6.44045e-4	0.0754576	0.0231685
chr17	18305815	18305911	6738807	0	-	0.302083	(0.28,0.32]	chr17	661438	2	INTRON	INTRON	TOP3A	ENSG00000177302.15	ENST00000321105.10:ENST00000542570.5:ENST00000469739.6:ENST00000584582.5:ENST00000582981.5:ENST00000580095.5:ENST00000461127.5:ENST00000584669.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	70	2	2.42868	4.03176	5.63484	0.0105331	0.00108324	0.0908969	0.0303015
chr20	5555850	5555950	7311771	0	-	0.31	(0.28,0.32]	chr20	744510	76	INTRON	INTRON	GPCPD1	ENSG00000125772.14	ENST00000379019.7:ENST00000481038.5:ENST00000418646.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	70	2	2.42868	4.03176	5.63484	0.0105331	0.00108324	0.0908969	0.0303015
chr2	10787839	10787939	1066462	0	-	0.52	(0.515,0.57]	chr2	113828	4	SS3_PROX	SS3_PROX:INTRON	PDIA6	ENSG00000143870.13	ENST00000272227.8:ENST00000381611.8:ENST00000404371.6:ENST00000617249.4:ENST00000540494.5:ENST00000404824.2	protein_coding	protein_coding	protein_coding	protein_coding	1	49	2	2.23915	4.031635	5.82412	0.0596178	1.29371e-5	0.16883600000000001	0.00266147
chr13	40998130	40998230	5577319	0	-	0.36	(0.35,0.378]	chr13	533202	49	INTRON	INTRON	ELF1	ENSG00000120690.16	ENST00000239882.7:ENST00000405737.2	protein_coding	protein_coding	protein_coding	protein_coding	1	50	2	2.57049	4.031535	5.49258	0.0262669	8.19894e-4	0.133676	0.0264086
chr18	57585763	57585863	6980466	0	-	0.4	(0.378,0.408]	chr18	690636	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	FECH	ENSG00000066926.13	ENST00000262093.11:ENST00000652755.1:ENST00000651787.1:ENST00000382873.8:ENST00000585494.5:ENST00000682485.1:ENST00000592699.6:ENST00000585699.1:ENST00000585747.1:ENST00000585878.1:ENST00000592111.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	49	2	3.56208	4.03132	4.50056	0.015974	6.94246e-4	0.101453	0.0240761
chr19	4419672	4419772	7001934	0	+	0.47	(0.44,0.476]	chr19	694529	12	INTRON	INTRON	CHAF1A	ENSG00000167670.16	ENST00000301280.10:ENST00000587739.1:ENST00000585371.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	61	2	2.44514	4.03132	5.6175	0.0087381	2.84938e-4	0.0845538	0.015495
chr10	11519467	11519566	4555137	0	-	0.50505	(0.476,0.515]	chr10	420430	5	INTRON	INTRON	USP6NL	ENSG00000148429.15	ENST00000609104.6:ENST00000379237.6:ENST00000277575.5	protein_coding	protein_coding	protein_coding	protein_coding	2	62	2	2.96824	4.031235	5.09423	0.00204588	9.98194e-4	0.04086	0.0290732
chr6	104787713	104787812	3171760	0	-	0.272727	[0,0.28]	chr6	295866	4	INTRON	INTRON	HACE1	ENSG00000085382.12	ENST00000262903.9:ENST00000416605.6:ENST00000369125.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	56	2	3.00498	4.03123	5.05748	0.0113653	0.00876063	0.0886611	0.0846118
chr21	25588289	25588334	7435463	0	-	0.288889	(0.28,0.32]	chr21	758146	1	INTRON	INTRON	MRPL39	ENSG00000154719.14	ENST00000307301.11:ENST00000352957.9	protein_coding	protein_coding	protein_coding	protein_coding	1	59	2	2.32871	4.03108	5.73345	0.0581621	1.71668e-4	0.167723	0.0113605
chr17	44499833	44499933	6780805	0	-	0.21	[0,0.28]	chr17	668697	246	INTRON	INTRON	GPATCH8	ENSG00000186566.13	ENST00000591680.6:ENST00000587228.5:ENST00000585614.1:ENST00000590041.5:ENST00000592746.5:ENST00000586037.5:ENST00000592154.1:ENST00000588554.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	56	2	2.80396	4.031055	5.25815	0.0161429	0.0066548	0.109464	0.0703807
chr17	35630302	35630401	6599977	0	+	0.30303	(0.28,0.32]	chr17	642282	22	INTRON	INTRON	AP2B1	ENSG00000006125.18	ENST00000616784.4:ENST00000621914.4:ENST00000620039.4:ENST00000616681.4:ENST00000621668.4:ENST00000610402.5:ENST00000612035.4:ENST00000614600.4:ENST00000612116.5:ENST00000618940.4:ENST00000619183.1:ENST00000588116.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	57	2	2.91851	4.03096	5.14341	0.0130672	0.00185891	0.093385	0.039946
chr9	72359621	72359718	4266223	0	-	0.319588	(0.28,0.32]	chr9	392629	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ZFAND5	ENSG00000107372.13	ENST00000376962.10:ENST00000237937.7:ENST00000376960.8:ENST00000488164.5:ENST00000343431.6:ENST00000471197.1:ENST00000376956.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	57	2	2.91851	4.03096	5.14341	0.0130672	0.00185891	0.093385	0.039946
chr5	36177571	36177664	2338225	0	+	0.354839	(0.35,0.378]	chr5	225915	4	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	SKP2	ENSG00000145604.17	ENST00000274254.9:ENST00000677537.1:ENST00000678260.1:ENST00000513151.6:ENST00000546211.6:ENST00000620197.5:ENST00000678270.1:ENST00000679258.1:ENST00000679015.1:ENST00000677911.1:ENST00000677984.1:ENST00000676559.1:ENST00000678537.1:ENST00000274255.11:ENST00000678580.1:ENST00000508514.5:ENST00000509692.5:ENST00000678149.1:ENST00000678948.1:ENST00000513263.2:ENST00000677861.1:ENST00000504386.1:ENST00000677905.1:ENST00000677886.1:ENST00000678129.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	144	2	3.88401	4.030895	4.17778	6.753e-5	7.02307e-6	0.00724876	0.00188004
chr7	112781123	112781222	3624311	0	-	0.262626	[0,0.28]	chr7	337160	26	INTRON	INTRON	TMEM168	ENSG00000146802.13	ENST00000312814.11:ENST00000454074.5:ENST00000447395.5:ENST00000418785.5:ENST00000449743.1:ENST00000441474.1	protein_coding	protein_coding	protein_coding	protein_coding	1	62	2	2.86008	4.030395	5.20071	0.0177015	0.00261806	0.105304	0.0470772
chr3	57759248	57759348	1435665	0	+	0.4	(0.378,0.408]	chr3	151661	10	INTRON	INTRON	SLMAP	ENSG00000163681.16	ENST00000295951.7:ENST00000659926.1:ENST00000659705.1:ENST00000671191.1:ENST00000667800.1:ENST00000655012.1:ENST00000428312.6:ENST00000664084.1:ENST00000657480.1:ENST00000467901.1:ENST00000295952.7:ENST00000383718.7:ENST00000449503.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	49	2	2.54849	4.030115	5.51174	0.0273196	5.93655e-4	0.136494	0.0225024
chr3	33799138	33799238	1394384	0	+	0.58	(0.57,1]	chr3	146018	3	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	PDCD6IP	ENSG00000170248.15	ENST00000457054.6:ENST00000648706.1:ENST00000435909.5:ENST00000430877.5:ENST00000413073.1:ENST00000307296.8:ENST00000477798.5:ENST00000498147.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	32	2	2.78409	4.03005	5.27601	0.0116033	3.73525e-5	0.0889104	0.00489903
chr3	9446492	9446577	1359412	0	+	0.458824	(0.44,0.476]	chr3	142768	4	SS3_PROX	SS3_PROX:INTRON	SETD5	ENSG00000168137.20	ENST00000402198.7:ENST00000682536.1:ENST00000663774.1:ENST00000665872.1:ENST00000666307.1:ENST00000693430.1:ENST00000691925.1:ENST00000684606.1:ENST00000691175.1:ENST00000688835.1:ENST00000443339.5:ENST00000406341.5:ENST00000670063.1:ENST00000684055.1:ENST00000407969.5:ENST00000493918.5:ENST00000399686.6:ENST00000413704.5:ENST00000691988.1:ENST00000466242.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	49	2	2.60774	4.029355	5.45097	0.0255874	1.90652e-4	0.120269	0.0120089
chr7	127735597	127735697	3403246	0	+	0.45	(0.44,0.476]	chr7	318134	138	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000468166.5:ENST00000465900.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	49	2	2.60774	4.029355	5.45097	0.0255874	1.90652e-4	0.120269	0.0120089
chr1	40390155	40390254	81608	0	+	0.383838	(0.378,0.408]	chr1	10553	151	INTRON	INTRON	SMAP2	ENSG00000084070.12	ENST00000435168.6:ENST00000372718.8:ENST00000372708.5	protein_coding	protein_coding	protein_coding	protein_coding	1	46	2	3.05393	4.02926	5.00459	0.00551532	0.00371142	0.0672816	0.0535094
chr5	126806693	126806793	2479474	0	+	0.4	(0.378,0.408]	chr5	236711	6	INTRON	INTRON	LMNB1	ENSG00000113368.12	ENST00000460265.5:ENST00000261366.10:ENST00000504788.5:ENST00000472034.5:ENST00000395354.1:ENST00000463908.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	46	2	3.05393	4.02926	5.00459	0.00551532	0.00371142	0.0672816	0.0535094
chr5	79614279	79614377	2398743	0	+	0.561224	(0.515,0.57]	chr5	231675	3	INTRON	INTRON	TENT2	ENSG00000164329.14	ENST00000505571.5:ENST00000423041.6:ENST00000504233.5:ENST00000453514.6:ENST00000428308.6:ENST00000515807.5:ENST00000296783.7:ENST00000514095.5:ENST00000508620.5:ENST00000503620.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	55	2	2.62817	4.02918	5.43019	0.004048	2.60422e-4	0.0578376	0.0148796
chr15	77402111	77402211	6237454	0	-	0.47	(0.44,0.476]	chr15	595315	365	INTRON	INTRON	PEAK1	ENSG00000173517.11	ENST00000560626.6:ENST00000682557.1:ENST00000558305.5:ENST00000564328.5:ENST00000567808.5:ENST00000567337.5:ENST00000569159.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	83	2	2.32451	4.029170000000001	5.73383	0.00241361	1.70474e-4	0.0453973	0.0119761
chr19	27744341	27744439	7164822	0	-	0.438776	(0.408,0.44]	chr19	724117	43	INTRON	INTRON	LINC00662	ENSG00000261824.8	ENST00000671282.1:ENST00000666409.1:ENST00000667518.1:ENST00000665996.1:ENST00000666003.1:ENST00000655465.1:ENST00000670572.1:ENST00000662487.1:ENST00000666658.1:ENST00000658694.1:ENST00000588027.5:ENST00000656086.1:ENST00000658434.1:ENST00000663775.1:ENST00000656191.1:ENST00000654098.1:ENST00000659785.1:ENST00000664720.1:ENST00000665102.1:ENST00000667396.1:ENST00000653317.1:ENST00000590677.6:ENST00000655166.2:ENST00000656647.1:ENST00000654565.1:ENST00000687807.1:ENST00000668933.1:ENST00000659995.1:ENST00000664383.1:ENST00000657677.1:ENST00000654443.1:ENST00000653471.1:ENST00000654151.1:ENST00000588150.5:ENST00000659922.1:ENST00000668560.1:ENST00000659734.1:ENST00000657730.1:ENST00000664688.1:ENST00000661680.2:ENST00000668513.1:ENST00000670305.1:ENST00000671152.1:ENST00000665874.1:ENST00000670973.1:ENST00000660820.1:ENST00000669191.1:ENST00000656170.1:ENST00000657659.2:ENST00000666734.1:ENST00000668068.1:ENST00000655567.1:ENST00000690384.1:ENST00000690193.1:ENST00000561521.1:ENST00000655066.1:ENST00000653459.1:ENST00000664444.1	lncRNA	lncRNA	lncRNA	lncRNA	2	61	2	2.86612	4.02907	5.19202	0.0016671	0.00157924	0.0369207	0.0366789
chr5	90724831	90724910	2422112	0	+	0.392405	(0.378,0.408]	chr5	233029	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	ADGRV1	ENSG00000164199.18	ENST00000405460.9:ENST00000639431.1:ENST00000640779.1:ENST00000640374.1:ENST00000509621.1:ENST00000640464.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	48	2	3.47377	4.02902	4.58427	0.0128325	0.00103087	0.0926667	0.0294094
chr12	50441389	50441489	5136750	0	+	0.38	(0.378,0.408]	chr12	484413	4	SS3_PROX	SS3_PROX:INTRON	LARP4	ENSG00000161813.23	ENST00000293618.12:ENST00000429001.7:ENST00000398473.7:ENST00000522085.5:ENST00000518444.5:ENST00000518561.5:ENST00000347328.9:ENST00000520064.2:ENST00000521120.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	50	2	2.66785	4.028665	5.38948	0.0224639	2.85992e-4	0.11692	0.0150568
chr4	110100311	110100411	2226750	0	-	0.39	(0.378,0.408]	chr4	218018	68	INTRON	INTRON	ELOVL6	ENSG00000170522.10	ENST00000394607.7:ENST00000302274.8:ENST00000514184.5:ENST00000506625.5:ENST00000506461.1:ENST00000503885.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	50	2	2.66785	4.028665	5.38948	0.0224639	2.85992e-4	0.11692	0.0150568
chr12	22679800	22679899	5095302	0	+	0.494949	(0.476,0.515]	chr12	481274	58	INTRON	INTRON	ETNK1	ENSG00000139163.16	ENST00000671733.1:ENST00000266517.9:ENST00000538218.2:ENST00000673406.1:ENST00000673188.1:ENST00000544191.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	48	2	2.99852	4.0284949999999995	5.05847	0.0077575	0.00108081	0.0757402	0.0300133
chr6	85591833	85591928	3150925	0	-	0.494737	(0.476,0.515]	chr6	293851	1	INTRON	INTRON	ENSG00000271793:SNX14	ENSG00000271793.2:ENSG00000135317.14	ENST00000682083.1:ENST00000683074.1:ENST00000681965.1:ENST00000682171.1:ENST00000684150.1:ENST00000683785.1:ENST00000682497.1:ENST00000684647.1:ENST00000683643.1:ENST00000682023.1:ENST00000682022.1:ENST00000683542.1:ENST00000683126.1:ENST00000683857.1:ENST00000683898.1:ENST00000682854.1:ENST00000682491.1:ENST00000682174.1:ENST00000684239.1:ENST00000682939.1:ENST00000684570.1:ENST00000682057.1:ENST00000682878.1:ENST00000683880.1:ENST00000684422.1:ENST00000682504.1:ENST00000683726.1:ENST00000684680.1:ENST00000683196.1:ENST00000683458.1:ENST00000683803.1:ENST00000684281.1:ENST00000682991.1:ENST00000683754.1:ENST00000683481.1:ENST00000682455.1:ENST00000682034.1:ENST00000684451.1:ENST00000683583.1:ENST00000682776.1:ENST00000683873.1:ENST00000683878.1:ENST00000683195.1:ENST00000682995.1:ENST00000682374.1:ENST00000683698.1:ENST00000682454.1:ENST00000682694.1:ENST00000682412.1:ENST00000682682.1:ENST00000346348.7:ENST00000314673.8:ENST00000682633.1:ENST00000683085.1:ENST00000682688.1:ENST00000684319.1:ENST00000683577.1:ENST00000682709.1:ENST00000684299.1:ENST00000682133.1:ENST00000682594.1:ENST00000683473.1:ENST00000682106.1:ENST00000683364.1:ENST00000683436.1:ENST00000684220.1:ENST00000683909.1:ENST00000684118.1:ENST00000681981.1:ENST00000682738.1:ENST00000509338.6:ENST00000684717.1:ENST00000682660.1:ENST00000683073.1:ENST00000515216.6:ENST00000684581.1:ENST00000683479.1:ENST00000682464.1:ENST00000684108.1:ENST00000682514.1:ENST00000684017.1:ENST00000684273.1:ENST00000513865.5:ENST00000505648.5:ENST00000369627.6:ENST00000508658.6:ENST00000683097.1:ENST00000683541.1:ENST00000683759.1:ENST00000369635.7:ENST00000684462.1:ENST00000682168.1:ENST00000513869.2:ENST00000514419.6:ENST00000683999.1:ENST00000503906.1:ENST00000683727.1:ENST00000684183.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	48	2	2.99852	4.0284949999999995	5.05847	0.0077575	0.00108081	0.0757402	0.0300133
chr7	111280594	111280694	3621288	0	-	0.4	(0.378,0.408]	chr7	337093	3167	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	118	2	1.82093	4.028465	6.236	0.00507045	2.20111e-5	0.0646039	0.00381911
chrX	44894686	44894786	7648817	0	+	0.58	(0.57,1]	chrX	782726	203	INTRON	INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000675440.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000621147.5:ENST00000475233.1:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	43	2	3.45511	4.02836	4.60161	0.00142229	4.32887e-5	0.0340865	0.00532052
chr17	82898170	82898269	6695696	0	+	0.646465	(0.57,1]	chr17	654985	18	INTRON	INTRON	TBCD	ENSG00000141556.22	ENST00000682479.1:ENST00000682722.1:ENST00000684464.1:ENST00000684544.1:ENST00000681983.1:ENST00000684361.1:ENST00000683184.1:ENST00000683282.1:ENST00000684408.1:ENST00000355528.9:ENST00000683444.1:ENST00000684776.1:ENST00000683041.1:ENST00000684760.1:ENST00000684349.1:ENST00000682213.1:ENST00000683009.1:ENST00000682921.1:ENST00000539345.6:ENST00000684000.1:ENST00000684188.1:ENST00000684429.1:ENST00000682610.1:ENST00000683821.1:ENST00000682654.1:ENST00000576160.6:ENST00000571712.5:ENST00000576996.5:ENST00000574801.5:ENST00000683584.1:ENST00000682099.1:ENST00000684559.1:ENST00000571316.5:ENST00000576760.5:ENST00000572984.5:ENST00000683839.1:ENST00000574975.5:ENST00000572953.5:ENST00000571796.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	31	2	3.183	4.0281649999999996	4.87333	0.00254356	3.21412e-4	0.0448135	0.0159645
chr11	106008186	106008282	5030669	0	-	0.416667	(0.408,0.44]	chr11	474039	4	UTR3	UTR3:EXON_MRNA:INTRON	MSANTD4	ENSG00000170903.12	ENST00000529805.1:ENST00000301919.9	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	49	2	2.6542	4.02814	5.40208	0.0227514	2.37882e-4	0.117618	0.0136195
chr12	110043012	110043112	5408552	0	-	0.44	(0.408,0.44]	chr12	516349	4	SS3_PROX	SS3_PROX:INTRON	C12orf76	ENSG00000174456.16	ENST00000546651.3:ENST00000309050.9:ENST00000615315.2:ENST00000687999.1:ENST00000687036.1:ENST00000685920.1:ENST00000549724.3:ENST00000548936.1:ENST00000551185.2:ENST00000546627.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	49	2	2.6542	4.02814	5.40208	0.0227514	2.37882e-4	0.117618	0.0136195
chr15	41666057	41666156	6006911	0	+	0.414141	(0.408,0.44]	chr15	571624	52	INTRON	INTRON	MGA	ENSG00000174197.18	ENST00000566718.6:ENST00000545763.6:ENST00000570161.6:ENST00000563576.6:ENST00000566586.6:ENST00000219905.13:ENST00000682463.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	49	2	2.6542	4.02814	5.40208	0.0227514	2.37882e-4	0.117618	0.0136195
chr19	10800138	10800235	7014612	0	+	0.42268	(0.408,0.44]	chr19	697005	12	INTRON	INTRON	DNM2	ENSG00000079805.19	ENST00000683738.1:ENST00000682285.1:ENST00000355667.11:ENST00000389253.9:ENST00000585892.5:ENST00000359692.10:ENST00000408974.8:ENST00000587830.2:ENST00000587329.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	49	2	2.6542	4.02814	5.40208	0.0227514	2.37882e-4	0.117618	0.0136195
chr22	24110268	24110368	7486179	0	+	0.43	(0.408,0.44]	chr22	763887	116	INTRON	INTRON	CABIN1	ENSG00000099991.18	ENST00000263119.10:ENST00000617531.4:ENST00000405822.6:ENST00000398319.6:ENST00000467937.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	49	2	2.6542	4.02814	5.40208	0.0227514	2.37882e-4	0.117618	0.0136195
chr7	30598395	30598495	3301462	0	+	0.48	(0.476,0.515]	chr7	306516	2	SS3_PROX	SS3_PROX:INTRON	GARS1	ENSG00000106105.15	ENST00000675051.1:ENST00000470392.2:ENST00000674643.1:ENST00000675529.1:ENST00000674807.1:ENST00000675810.1:ENST00000676088.1:ENST00000674815.1:ENST00000676403.1:ENST00000485784.2:ENST00000676210.1:ENST00000478124.6:ENST00000454308.6:ENST00000389266.8:ENST00000675693.1:ENST00000676259.1:ENST00000675651.1:ENST00000674616.1:ENST00000674737.1:ENST00000675859.1:ENST00000676140.1:ENST00000674969.1:ENST00000676164.1:ENST00000675886.1:ENST00000444666.6:ENST00000675587.1:ENST00000674851.1:ENST00000675863.1:ENST00000675025.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	134	2	3.2496	4.02806	4.80652	3.39435e-4	4.96159e-7	0.0170719	3.78502e-4
chr5	138020684	138020762	2730681	0	-	0.282051	(0.28,0.32]	chr5	257011	3	SS5_PROX	SS5_PROX:INTRON	FAM13B	ENSG00000031003.11	ENST00000689681.1:ENST00000033079.7:ENST00000425075.6:ENST00000420893.6:ENST00000514310.5:ENST00000502471.5:ENST00000509596.5:ENST00000508403.5:ENST00000505961.1	protein_coding	protein_coding	protein_coding	protein_coding	1	52	2	3.1268	4.028045	4.92929	0.0098607	0.00508956	0.0838128	0.0646039
chr1	193245836	193245936	285872	0	+	0.31	(0.28,0.32]	chr1	32861	76	INTRON	INTRON	CDC73	ENSG00000134371.14	ENST00000643006.1:ENST00000367435.5:ENST00000650197.1:ENST00000648071.1:ENST00000635846.1:ENST00000649613.1:ENST00000477868.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	70	2	2.70831	4.0279799999999994	5.34765	0.00378444	0.00287138	0.0562562	0.0474836
chr12	21652262	21652361	5277977	0	-	0.444444	(0.44,0.476]	chr12	503015	49	INTRON	INTRON	LDHB	ENSG00000111716.14	ENST00000350669.5:ENST00000673047.2:ENST00000396076.5:ENST00000396075.5:ENST00000470280.1:ENST00000450584.5:ENST00000539782.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	51	2	3.35227	4.02791	4.70355	0.00383786	0.0022005699999999998	0.0562562	0.0417893
chr15	84699790	84699889	6251864	0	-	0.444444	(0.44,0.476]	chr15	596683	73	INTRON	INTRON	SEC11A	ENSG00000140612.14	ENST00000559729.5:ENST00000268220.12:ENST00000560266.5:ENST00000558134.5:ENST00000558217.5:ENST00000455959.7:ENST00000560409.5:ENST00000558196.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	65	2	2.33899	4.0278	5.71661	0.0142027	5.13947e-5	0.0959987	0.00585477
chr11	3741213	3741313	4894598	0	-	0.29	(0.28,0.32]	chr11	458864	55	INTRON	INTRON	NUP98	ENSG00000110713.17	ENST00000359171.8:ENST00000324932.12:ENST00000650171.1:ENST00000355260.7:ENST00000397004.8:ENST00000397007.8:ENST00000527104.5:ENST00000529379.1:ENST00000397013.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	52	2	2.80157	4.027725	5.25388	0.0147132	0.00385849	0.106558	0.0542786
chr1	51751068	51751161	100748	0	+	0.419355	(0.408,0.44]	chr1	13312	5	INTRON	INTRON	OSBPL9	ENSG00000117859.19	ENST00000371714.5:ENST00000428468.6:ENST00000447887.5:ENST00000495776.5:ENST00000435274.6:ENST00000453295.5:ENST00000489990.5:ENST00000484890.5:ENST00000532975.5:ENST00000534040.5:ENST00000527631.5:ENST00000531828.5:ENST00000361556.9:ENST00000473207.6:ENST00000533884.5:ENST00000481937.5:ENST00000526917.5:ENST00000462759.5:ENST00000486942.5:ENST00000524620.1:ENST00000528603.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	49	2	3.05705	4.02771	4.99837	0.00658331	0.00131369	0.0701901	0.0333932
chr11	125902969	125903069	5049852	0	-	0.41	(0.408,0.44]	chr11	476450	4	SS5_PROX	SS5_PROX:INTRON	PUS3	ENSG00000110060.9	ENST00000227474.8:ENST00000613398.4:ENST00000534158.5:ENST00000529801.1	protein_coding	protein_coding	protein_coding	protein_coding	1	49	2	3.05705	4.02771	4.99837	0.00658331	0.00131369	0.0701901	0.0333932
chr2	9544753	9544852	1064381	0	-	0.484848	(0.476,0.515]	chr2	113556	6	INTRON	INTRON	ADAM17	ENSG00000151694.14	ENST00000310823.8:ENST00000648548.1:ENST00000649227.1:ENST00000648857.1:ENST00000647979.1:ENST00000647610.1:ENST00000650116.1:ENST00000647622.1:ENST00000649972.1:ENST00000650241.1:ENST00000618923.2:ENST00000478059.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	99	2	3.77334	4.02744	4.28154	3.52709e-4	1.50554e-5	0.0174637	0.00292449
chr22	29285234	29285333	7496236	0	+	0.494949	(0.476,0.515]	chr22	764824	23	INTRON	INTRON	EWSR1	ENSG00000182944.18	ENST00000629659.2:ENST00000332050.10:ENST00000397938.7:ENST00000406548.5:ENST00000437155.6:ENST00000415761.5:ENST00000331029.11:ENST00000483415.5:ENST00000414183.6:ENST00000333395.10:ENST00000332035.10:ENST00000455726.5:ENST00000479135.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	158	2	3.63172	4.027285	4.42285	1.20087e-5	3.9871e-6	0.0027578	0.00131958
chr1	212792187	212792287	309569	0	+	0.54	(0.515,0.57]	chr1	35714	2	SS5_PROX	SS5_PROX:INTRON	TATDN3	ENSG00000203705.11	ENST00000532324.5:ENST00000530441.5:ENST00000526641.5:ENST00000366973.8:ENST00000531963.5:ENST00000366974.9:ENST00000526997.5:ENST00000533650.5:ENST00000532433.5:ENST00000488246.6:ENST00000525574.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	42	2	3.37125	4.027175	4.6831	0.00471288	0.00136343	0.0600108	0.0339121
chr19	11107614	11107714	7017006	0	+	0.59	(0.57,1]	chr19	697451	1	SS5_PROX	SS5_PROX:INTRON	LDLR	ENSG00000130164.14	ENST00000557933.5:ENST00000558518.6:ENST00000545707.5:ENST00000535915.5:ENST00000455727.6:ENST00000558013.5:ENST00000252444.9:ENST00000560467.1	protein_coding	protein_coding	protein_coding	protein_coding	2	40	2	3.07938	4.02698	4.97458	4.22401e-4	2.67728e-4	0.0183838	0.0149989
chr2	167845919	167846019	1258259	0	-	0.32	(0.28,0.32]	chr2	133322	303	INTRON	INTRON	B3GALT1-AS1	ENSG00000235335.3	ENST00000430546.2:ENST00000657553.1:ENST00000670221.1:ENST00000436982.2	lncRNA	lncRNA	lncRNA	lncRNA	1	54	2	2.53522	4.026949999999999	5.51868	0.0310424	0.00162747	0.143457	0.0367966
chr12	53467704	53467722	5143055	0	+	0.166667	[0,0.28]	chr12	485435	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PCBP2	ENSG00000197111.16	ENST00000546463.6:ENST00000437231.5:ENST00000447282.5:ENST00000359282.9:ENST00000549863.5:ENST00000359462.9:ENST00000552296.6:ENST00000552819.5:ENST00000455667.7:ENST00000439930.7:ENST00000548933.5:ENST00000562264.5:ENST00000550585.5:ENST00000553064.6:ENST00000547859.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	56	2	3.05114	4.026885	5.00263	0.013055	0.0075493	0.093385	0.0773151
chr2	113913727	113913825	854482	0	+	0.255102	[0,0.28]	chr2	95903	1	INTRON	INTRON	ACTR3	ENSG00000115091.12	ENST00000443297.5:ENST00000263238.7:ENST00000415792.5:ENST00000446821.5:ENST00000535589.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	56	2	3.05114	4.026885	5.00263	0.013055	0.0075493	0.093385	0.0773151
chrX	111721015	111721102	7702432	0	+	0.264368	[0,0.28]	chrX	788278	5	INTRON	INTRON	ALG13	ENSG00000101901.12	ENST00000394780.8:ENST00000251943.8:ENST00000610588.4:ENST00000621367.4:ENST00000624161.3:ENST00000636363.1:ENST00000495283.5:ENST00000623144.3:ENST00000470971.5:ENST00000623148.3:ENST00000436609.5:ENST00000623622.1:ENST00000490774.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	56	2	3.05114	4.026885	5.00263	0.013055	0.0075493	0.093385	0.0773151
chr15	30669874	30669973	5992720	0	+	0.292929	(0.28,0.32]	chr15	569767	107	INTRON	INTRON	ENSG00000284906:ENSG00000285035:ENSG00000187951	ENSG00000284906.3:ENSG00000285035.2:ENSG00000187951.11	ENST00000685924.1:ENST00000563110.6:ENST00000566548.5:ENST00000602616.6:ENST00000562954.1	protein_coding	protein_coding	protein_coding:lncRNA:transcribed_unprocessed_pseudogene	protein_coding:nonsense_mediated_decay:lncRNA:processed_transcript	4	97	2	2.31129	4.026815	5.7423400000000004	0.00319044	7.31742e-4	0.0520345	0.0248722
chr8	60276500	60276600	3956854	0	-	0.23	[0,0.28]	chr8	362985	101	INTRON	INTRON	CA8	ENSG00000178538.10	ENST00000317995.5:ENST00000524872.5:ENST00000529918.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	56	2	2.74901	4.026625	5.30424	0.0188843	0.00584781	0.118148	0.0667594
chr22	49822353	49822450	7603172	0	-	0.474227	(0.44,0.476]	chr22	778663	10	INTRON	INTRON	BRD1	ENSG00000100425.19	ENST00000404760.6:ENST00000404034.5:ENST00000216267.12:ENST00000438393.5:ENST00000457780.3:ENST00000459821.1:ENST00000494833.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	55	2	3.61718	4.026215	4.43525	0.00897296	7.37432e-4	0.0849778	0.02495
chrX	123638433	123638528	7878091	0	-	0.463158	(0.44,0.476]	chrX	802501	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	THOC2	ENSG00000125676.20	ENST00000245838.13:ENST00000355725.8:ENST00000491737.5	protein_coding	protein_coding	protein_coding	protein_coding	3	80	2	2.50734	4.0262	5.54506	0.00288299	1.21665e-4	0.0475859	0.00942499
chr1	28766831	28766931	58647	0	+	0.45	(0.44,0.476]	chr1	7605	225	INTRON	INTRON	YTHDF2	ENSG00000198492.16	ENST00000542507.5:ENST00000373812.8:ENST00000541996.5:ENST00000478283.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	63	2	2.21079	4.02613	5.84147	0.0194581	1.03947e-4	0.119831	0.00915599
chr5	132886009	132886109	2724464	0	-	0.5	(0.476,0.515]	chr5	256243	3	SS5_PROX	SS5_PROX:INTRON	AFF4	ENSG00000072364.13	ENST00000265343.10	protein_coding	protein_coding	protein_coding	protein_coding	5	92	2	2.10246	4.025915	5.94937	0.00381269	5.50774e-5	0.0562562	0.0065165
chrX	135534764	135534863	7725663	0	+	0.424242	(0.408,0.44]	chrX	790370	131	INTRON	INTRON	INTS6L	ENSG00000165359.16	ENST00000370752.4:ENST00000481908.5:ENST00000639893.2:ENST00000493637.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	66	2	2.64944	4.02576	5.40208	0.00481947	2.37882e-4	0.060277	0.0136195
chr7	133284536	133284635	3418476	0	+	0.565657	(0.515,0.57]	chr7	319309	90	INTRON	INTRON	EXOC4	ENSG00000131558.15	ENST00000486013.5:ENST00000393161.6:ENST00000253861.5:ENST00000462055.5:ENST00000492326.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	55	2	2.82994	4.025675	5.22141	0.00168661	6.44141e-4	0.0381778	0.0231685
chr2	24662954	24663054	710981	0	+	0.43	(0.408,0.44]	chr2	82237	38	INTRON	INTRON	NCOA1	ENSG00000084676.16	ENST00000348332.8:ENST00000406961.5:ENST00000405141.5:ENST00000407230.5:ENST00000288599.9:ENST00000395856.3	protein_coding	protein_coding	protein_coding	protein_coding	3	74	2	2.70586	4.02567	5.34548	9.40657e-4	9.14702e-4	0.0280776	0.027804
chr3	25649761	25649860	1642018	0	-	0.343434	(0.32,0.35]	chr3	168598	39	INTRON	INTRON	TOP2B	ENSG00000077097.16	ENST00000264331.9:ENST00000435706.6:ENST00000424225.1	protein_coding	protein_coding	protein_coding	protein_coding	6	112	2	2.11451	4.025425	5.93634	0.00267385	2.02056e-4	0.0478106	0.0129814
chr8	42276686	42276785	3742993	0	+	0.454545	(0.44,0.476]	chr8	348064	41	INTRON	INTRON	IKBKB	ENSG00000104365.16	ENST00000520810.6:ENST00000629753.2:ENST00000517890.5:ENST00000520835.7:ENST00000523105.5:ENST00000519735.5:ENST00000519733.5:ENST00000518679.5:ENST00000517917.5:ENST00000342222.6:ENST00000520201.5:ENST00000518647.5:ENST00000517388.5:ENST00000521661.5:ENST00000520655.5:ENST00000517812.5:ENST00000522147.4:ENST00000523517.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	45	2	3.08591	4.02541	4.96491	0.00481262	0.0034249	0.0638089	0.0517761
chr21	43872145	43872245	7413859	0	+	0.38	(0.378,0.408]	chr21	755688	44	INTRON	INTRON	AGPAT3	ENSG00000160216.21	ENST00000291572.13:ENST00000448287.5	protein_coding	protein_coding	protein_coding	protein_coding	2	67	2	2.30628	4.02533	5.74438	0.0163339	5.15539e-5	0.101571	0.00585477
chr7	10533705	10533805	3482116	0	-	0.59	(0.57,1]	chr7	325766	806	INTRON	INTRON	MGC4859	ENSG00000283117.1	ENST00000634803.1	lncRNA	lncRNA	lncRNA	lncRNA	1	31	2	3.5592	4.025135	4.49107	0.00220544	4.21089e-4	0.0417893	0.0183576
chr10	45942143	45942243	4608358	0	-	0.37	(0.35,0.378]	chr10	424485	23	INTRON	INTRON	PARGP1	ENSG00000239883.9	ENST00000688192.1:ENST00000686367.1:ENST00000693310.1:ENST00000417555.2:ENST00000687844.1:ENST00000687550.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	2	64	2	2.39583	4.025	5.65417	0.0107976	4.33402e-4	0.0920575	0.0190829
chr12	45730816	45730916	5122726	0	+	0.47	(0.44,0.476]	chr12	483294	2	SS3_PROX	SS3_PROX:INTRON	ARID2	ENSG00000189079.17	ENST00000334344.11:ENST00000427628.5:ENST00000426776.5:ENST00000422737.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	50	2	3.26669	4.0248100000000004	4.78293	0.00305435	0.00292033	0.0494641	0.0493883
chr3	142000754	142000854	1833953	0	-	0.38	(0.378,0.408]	chr3	184333	4	SS3_PROX	SS3_PROX:INTRON	TFDP2	ENSG00000114126.18	ENST00000489671.6:ENST00000486111.5:ENST00000477292.5:ENST00000495310.5:ENST00000467072.5:ENST00000487734.5:ENST00000479040.5:ENST00000467667.5:ENST00000478006.5:ENST00000497579.5:ENST00000464782.5:ENST00000488107.6:ENST00000475734.5:ENST00000471095.5:ENST00000494358.5:ENST00000467634.1:ENST00000495095.6:ENST00000476617.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	46	2	3.17089	4.024255	4.87762	0.00553849	0.00357279	0.0648867	0.0548435
chr13	41262331	41262410	5578535	0	-	0.227848	[0,0.28]	chr13	533295	1	SS3_ADJ	SS3_ADJ:SS5_ADJ:SS3_PROX:SS5_PROX:INTRON	MTRF1	ENSG00000120662.16	ENST00000379480.9:ENST00000379477.5:ENST00000239852.10:ENST00000452359.5:ENST00000497679.6:ENST00000430347.3:ENST00000492827.1:ENST00000498245.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	62	2	2.44242	4.024165	5.60591	0.0491024	6.01442e-4	0.155269	0.0223465
chr12	64501839	64501930	5153953	0	+	0.318681	(0.28,0.32]	chr12	488067	6	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TBK1	ENSG00000183735.11	ENST00000676684.1:ENST00000677499.1:ENST00000677641.1:ENST00000676654.1:ENST00000652537.1:ENST00000676809.1:ENST00000650790.1:ENST00000652657.1:ENST00000676912.1:ENST00000677686.1:ENST00000331710.10:ENST00000651262.1:ENST00000677632.1:ENST00000650997.1:ENST00000678180.1:ENST00000676930.1:ENST00000650786.1:ENST00000677831.1:ENST00000651014.1:ENST00000651878.1:ENST00000678197.1:ENST00000650708.1:ENST00000676587.1:ENST00000545392.2:ENST00000676593.1:ENST00000677313.1:ENST00000678992.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	57	2	2.96187	4.024045	5.08622	0.0114995	0.00227525	0.0889104	0.0437013
chr7	111398909	111399009	3622475	0	-	0.38	(0.378,0.408]	chr7	337108	61	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000452895.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding	1	46	2	2.92665	4.023965	5.12128	0.0086017	0.00251746	0.083729	0.0446195
chr7	30605642	30605740	3301545	0	+	0.336735	(0.32,0.35]	chr7	306544	3	EXON_MRNA	EXON_MRNA:INTRON	GARS1	ENSG00000106105.15	ENST00000675051.1:ENST00000470392.2:ENST00000674643.1:ENST00000675529.1:ENST00000674807.1:ENST00000675810.1:ENST00000676088.1:ENST00000674815.1:ENST00000676403.1:ENST00000485784.2:ENST00000676210.1:ENST00000478124.6:ENST00000389266.8:ENST00000675693.1:ENST00000676259.1:ENST00000675651.1:ENST00000674616.1:ENST00000674737.1:ENST00000675859.1:ENST00000676140.1:ENST00000674969.1:ENST00000676164.1:ENST00000675886.1:ENST00000444666.6:ENST00000675587.1:ENST00000674851.1:ENST00000675863.1:ENST00000674734.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	83	2	2.7634	4.02395	5.2845	0.00240071	8.19858e-4	0.0440612	0.026165
chr1	95130578	95130678	166698	0	+	0.36	(0.35,0.378]	chr1	18098	90	INTRON	INTRON	TLCD4:TLCD4-RWDD3:ENSG00000231992	ENSG00000152078.10:ENSG00000271092.5:ENSG00000231992.1	ENST00000370203.9:ENST00000456991.5:ENST00000604534.5:ENST00000455656.1:ENST00000434207.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	3	77	2	2.59827	4.02373	5.44919	0.0016492	9.66659e-4	0.0375159	0.0282401
chr2	173172784	173172883	921419	0	+	0.454545	(0.44,0.476]	chr2	101421	25	INTRON	INTRON	MAP3K20	ENSG00000091436.17	ENST00000539448.5:ENST00000409176.6:ENST00000468408.5:ENST00000338983.7:ENST00000375213.8:ENST00000476618.5:ENST00000422149.1:ENST00000480606.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	48	2	2.86231	4.02356	5.18481	0.012214	6.21872e-4	0.0910127	0.0223951
chr8	141419512	141419610	3878658	0	+	0.469388	(0.44,0.476]	chr8	356213	11	INTRON	INTRON	PTP4A3	ENSG00000184489.13	ENST00000520105.5:ENST00000521578.6:ENST00000523147.5:ENST00000329397.6:ENST00000349124.3:ENST00000680615.1:ENST00000681443.1	protein_coding	protein_coding	protein_coding	protein_coding	1	48	2	2.86231	4.02356	5.18481	0.012214	6.21872e-4	0.0910127	0.0223951
chr19	10175918	10176018	7134677	0	-	0.49	(0.476,0.515]	chr19	719219	3	SS3_PROX	SS3_PROX:INTRON	DNMT1	ENSG00000130816.17	ENST00000340748.8:ENST00000359526.9:ENST00000592705.5:ENST00000679103.1:ENST00000677634.1:ENST00000676820.1:ENST00000677250.1:ENST00000677013.1:ENST00000677685.1:ENST00000677616.1:ENST00000676604.1:ENST00000678024.1:ENST00000676610.1:ENST00000678804.1:ENST00000679313.1:ENST00000677946.1:ENST00000586988.5:ENST00000588952.5:ENST00000588118.5:ENST00000592342.5:ENST00000592054.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	73	2	2.59304	4.02347	5.4539	0.00158794	5.16081e-4	0.0367961	0.0208667
chr19	39434926	39435023	7182449	0	-	0.443299	(0.44,0.476]	chr19	726281	13	EXON_MRNA	EXON_MRNA:INTRON	RPS16	ENSG00000105193.9	ENST00000251453.8:ENST00000339471.8:ENST00000599539.5:ENST00000601655.5:ENST00000601390.1:ENST00000599705.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	224	2	3.94935	4.023455	4.09756	3.65694e-6	3.98989e-7	0.00124794	3.5562e-4
chr15	74845993	74846093	6222461	0	-	0.49	(0.476,0.515]	chr15	594197	4	SS3_PROX	SS3_PROX:INTRON	SCAMP2	ENSG00000140497.16	ENST00000268099.13:ENST00000566480.5:ENST00000563663.5:ENST00000563829.5:ENST00000569251.5:ENST00000569904.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	45	2	3.07422	4.023375	4.97253	0.00506023	0.00311573	0.0646039	0.0498063
chr10	95262963	95263063	4666397	0	-	0.48	(0.476,0.515]	chr10	430122	152	INTRON	INTRON	PDLIM1	ENSG00000107438.9	ENST00000329399.7:ENST00000477757.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	45	2	3.01197	4.023315	5.03466	0.00633162	0.00252065	0.0722266	0.0446195
chr1	3780989	3781087	363871	0	-	0.520408	(0.515,0.57]	chr1	42596	26	UTR3	UTR3:EXON_MRNA	LRRC47	ENSG00000130764.10	ENST00000378251.3	protein_coding	protein_coding	protein_coding	protein_coding	4	140	2	3.53204	4.023255	4.51447	8.5982e-6	2.25115e-6	0.00225139	9.42151e-4
chr1	26843107	26843207	52378	0	+	0.34	(0.32,0.35]	chr1	6697	101	INTRON	INTRON	ZDHHC18	ENSG00000204160.12	ENST00000374142.9:ENST00000374141.6:ENST00000534643.5	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	3.77344	4.02322	4.273	0.0596635	0.0368357	0.189982	0.138959
chr1	88727596	88727696	156202	0	+	0.33	(0.32,0.35]	chr1	17045	426	INTRON	INTRON	PKN2	ENSG00000065243.20	ENST00000316005.11:ENST00000370521.8:ENST00000370513.9	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	3.77344	4.02322	4.273	0.0596635	0.0368357	0.189982	0.138959
chr1	108294525	108294624	176580	0	+	0.333333	(0.32,0.35]	chr1	19153	98	INTRON	INTRON	SLC25A24P1	ENSG00000241361.8	ENST00000411846.6:ENST00000434803.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	23	2	3.77344	4.02322	4.273	0.0596635	0.0368357	0.189982	0.138959
chr10	5704932	5705032	4384545	0	+	0.34	(0.32,0.35]	chr10	404466	48	INTRON	INTRON	TASOR2	ENSG00000108021.21	ENST00000695832.1:ENST00000328090.9:ENST00000695737.1:ENST00000695833.1:ENST00000695834.1:ENST00000695835.1:ENST00000695836.1:ENST00000473789.5:ENST00000477043.5:ENST00000496681.5:ENST00000480839.6:ENST00000645567.1:ENST00000482419.1:ENST00000463468.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	23	2	3.77344	4.02322	4.273	0.0596635	0.0368357	0.189982	0.138959
chr10	72589561	72589661	4646566	0	-	0.35	(0.32,0.35]	chr10	427462	224	INTRON	INTRON	MICU1	ENSG00000107745.20	ENST00000361114.10:ENST00000642044.1:ENST00000635239.1:ENST00000604238.2:ENST00000603011.5:ENST00000604025.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	23	2	3.77344	4.02322	4.273	0.0596635	0.0368357	0.189982	0.138959
chr12	28196568	28196666	5100330	0	+	0.336735	(0.32,0.35]	chr12	481898	49	INTRON	INTRON	CCDC91	ENSG00000123106.11	ENST00000540794.5:ENST00000538586.5:ENST00000536154.5:ENST00000535520.5:ENST00000539107.5:ENST00000544649.5:ENST00000545336.5:ENST00000536442.6:ENST00000544780.5:ENST00000543534.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	23	2	3.77344	4.02322	4.273	0.0596635	0.0368357	0.189982	0.138959
chr12	74242243	74242343	5367869	0	-	0.35	(0.32,0.35]	chr12	512116	380	INTRON	INTRON	LINC02882	ENSG00000251138.7	ENST00000663261.1:ENST00000665907.1:ENST00000669556.1:ENST00000653134.1:ENST00000549905.5:ENST00000662107.1:ENST00000658833.1:ENST00000515416.7:ENST00000551726.2:ENST00000670573.1:ENST00000656876.1:ENST00000668228.1:ENST00000668997.1:ENST00000665895.1:ENST00000670471.1:ENST00000658677.1:ENST00000668665.1	lncRNA	lncRNA	lncRNA	lncRNA	0	23	2	3.77344	4.02322	4.273	0.0596635	0.0368357	0.189982	0.138959
chr15	68115367	68115467	6056567	0	+	0.33	(0.32,0.35]	chr15	576567	271	INTRON	INTRON	PIAS1	ENSG00000033800.14	ENST00000564915.5:ENST00000249636.11:ENST00000562190.1:ENST00000545237.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	23	2	3.77344	4.02322	4.273	0.0596635	0.0368357	0.189982	0.138959
chr16	75543179	75543279	6529612	0	-	0.33	(0.32,0.35]	chr16	632420	2	SS3_PROX	SS3_PROX:INTRON	TMEM231	ENSG00000205084.12	ENST00000258173.11:ENST00000562410.5:ENST00000692097.1:ENST00000686680.1:ENST00000688195.1:ENST00000692689.1:ENST00000688270.1:ENST00000568377.5:ENST00000693682.1:ENST00000693457.1:ENST00000689040.1:ENST00000685935.1:ENST00000688618.1:ENST00000565067.5:ENST00000570006.5:ENST00000569294.1:ENST00000686547.1:ENST00000564576.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	23	2	3.77344	4.02322	4.273	0.0596635	0.0368357	0.189982	0.138959
chr17	51289678	51289776	6627877	0	+	0.346939	(0.32,0.35]	chr17	647407	7	INTRON	INTRON	UTP18	ENSG00000011260.14	ENST00000225298.12:ENST00000583205.5:ENST00000579261.6:ENST00000582832.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	23	2	3.77344	4.02322	4.273	0.0596635	0.0368357	0.189982	0.138959
chr18	46175429	46175529	6899095	0	+	0.35	(0.32,0.35]	chr18	683605	7	INTRON	INTRON	C18orf25	ENSG00000152242.11	ENST00000588730.1:ENST00000587591.5:ENST00000619230.1:ENST00000615052.5:ENST00000619301.4:ENST00000615553.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	23	2	3.77344	4.02322	4.273	0.0596635	0.0368357	0.189982	0.138959
chr2	61292963	61293063	1128736	0	-	0.33	(0.32,0.35]	chr2	121325	1	SS5_PROX	SS5_PROX:INTRON	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000472706.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	23	2	3.77344	4.02322	4.273	0.0596635	0.0368357	0.189982	0.138959
chr21	25603395	25603495	7435622	0	-	0.33	(0.32,0.35]	chr21	758183	2	SS5_PROX	SS5_PROX:INTRON	MRPL39	ENSG00000154719.14	ENST00000307301.11:ENST00000352957.9:ENST00000419219.1	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	3.77344	4.02322	4.273	0.0596635	0.0368357	0.189982	0.138959
chr22	16641923	16642021	7473769	0	+	0.336735	(0.32,0.35]	chr22	762013	13	INTRON	INTRON	TPTEP1	ENSG00000100181.22	ENST00000558085.6:ENST00000400593.6:ENST00000426585.5:ENST00000383140.7	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	23	2	3.77344	4.02322	4.273	0.0596635	0.0368357	0.189982	0.138959
chr3	73001549	73001649	1452001	0	+	0.34	(0.32,0.35]	chr3	152951	30	INTRON	INTRON	PPP4R2	ENSG00000163605.15	ENST00000482242.5:ENST00000356692.10:ENST00000470976.1:ENST00000488810.5:ENST00000495566.1:ENST00000476505.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	23	2	3.77344	4.02322	4.273	0.0596635	0.0368357	0.189982	0.138959
chr4	516285	516385	1907527	0	+	0.35	(0.32,0.35]	chr4	191136	1	SS5_PROX	SS5_PROX:INTRON	PIGG	ENSG00000174227.16	ENST00000453061.7:ENST00000504187.5:ENST00000310340.9:ENST00000504346.5:ENST00000503111.5:ENST00000383028.8:ENST00000506402.5:ENST00000509768.1:ENST00000506898.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	23	2	3.77344	4.02322	4.273	0.0596635	0.0368357	0.189982	0.138959
chr5	43458788	43458888	2614586	0	-	0.33	(0.32,0.35]	chr5	248552	38	INTRON	INTRON	TMEM267	ENSG00000151881.15	ENST00000397080.8:ENST00000500337.6:ENST00000512085.5:ENST00000511525.1:ENST00000510130.1:ENST00000506860.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	23	2	3.77344	4.02322	4.273	0.0596635	0.0368357	0.189982	0.138959
chr6	67909882	67909981	2885015	0	+	0.323232	(0.32,0.35]	chr6	273676	218	INTRON	INTRON	ENSG00000286680	ENSG00000286680.1	ENST00000661401.1	lncRNA	lncRNA	lncRNA	lncRNA	0	23	2	3.77344	4.02322	4.273	0.0596635	0.0368357	0.189982	0.138959
chr6	69124827	69124927	2891229	0	+	0.34	(0.32,0.35]	chr6	273810	484	INTRON	INTRON	ADGRB3	ENSG00000135298.15	ENST00000370598.6:ENST00000684661.1:ENST00000546190.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	23	2	3.77344	4.02322	4.273	0.0596635	0.0368357	0.189982	0.138959
chr6	97248484	97248584	3164418	0	-	0.34	(0.32,0.35]	chr6	295115	14	INTRON	INTRON	MMS22L	ENSG00000146263.12	ENST00000683635.1:ENST00000275053.8:ENST00000369251.6:ENST00000509383.5:ENST00000510018.5:ENST00000482634.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	23	2	3.77344	4.02322	4.273	0.0596635	0.0368357	0.189982	0.138959
chr6	157064391	157064491	3010043	0	+	0.34	(0.32,0.35]	chr6	281150	126	INTRON	INTRON	ARID1B	ENSG00000049618.24	ENST00000346085.10:ENST00000636930.2:ENST00000647938.1:ENST00000350026.10:ENST00000674190.1:ENST00000414678.7:ENST00000319584.11:ENST00000452544.2:ENST00000637887.1:ENST00000635849.1:ENST00000637003.1:ENST00000637904.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	23	2	3.77344	4.02322	4.273	0.0596635	0.0368357	0.189982	0.138959
chr7	91972539	91972635	3351332	0	+	0.34375	(0.32,0.35]	chr7	312186	17	INTRON	INTRON	AKAP9	ENSG00000127914.19	ENST00000680534.1:ENST00000680513.1:ENST00000680072.1:ENST00000679821.1:ENST00000679554.1:ENST00000356239.8:ENST00000679521.1:ENST00000680181.1:ENST00000681722.1:ENST00000680766.1:ENST00000679448.1:ENST00000681412.1:ENST00000680047.1:ENST00000679474.1:ENST00000680952.1:ENST00000679457.1:ENST00000679722.1:ENST00000680074.1:ENST00000493453.1:ENST00000394564.5:ENST00000674381.2:ENST00000359028.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	23	2	3.77344	4.02322	4.273	0.0596635	0.0368357	0.189982	0.138959
chr8	125096927	125097026	3853528	0	+	0.343434	(0.32,0.35]	chr8	355199	20	INTRON	INTRON	NSMCE2	ENSG00000156831.8	ENST00000523741.5:ENST00000517532.5:ENST00000520866.5:ENST00000519010.5:ENST00000287437.8:ENST00000518013.5:ENST00000522563.5:ENST00000523824.5:ENST00000518146.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	23	2	3.77344	4.02322	4.273	0.0596635	0.0368357	0.189982	0.138959
chr8	140165325	140165425	4072401	0	-	0.33	(0.32,0.35]	chr8	370046	833	INTRON	INTRON	TRAPPC9	ENSG00000167632.18	ENST00000648948.2:ENST00000438773.4:ENST00000520857.5:ENST00000521667.5:ENST00000517667.5:ENST00000520532.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	23	2	3.77344	4.02322	4.273	0.0596635	0.0368357	0.189982	0.138959
chr3	152441791	152441890	1536725	0	+	0.494949	(0.476,0.515]	chr3	160023	85	INTRON	INTRON	MBNL1	ENSG00000152601.18	ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000324210.10:ENST00000493459.5:ENST00000460591.5:ENST00000545754.5:ENST00000357472.7:ENST00000324196.9:ENST00000498502.5:ENST00000463374.5:ENST00000485910.5:ENST00000465907.6:ENST00000492948.5:ENST00000485509.5:ENST00000464596.5:ENST00000478535.1:ENST00000460166.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	73	2	2.16306	4.023215	5.88337	0.00973468	7.59355e-5	0.0877284	0.00777694
chr1	112923129	112923228	523809	0	-	0.494949	(0.476,0.515]	chr1	61677	6	INTRON	INTRON	SLC16A1	ENSG00000155380.13	ENST00000679803.1:ENST00000369626.8:ENST00000443580.6:ENST00000538576.5:ENST00000429288.2:ENST00000458229.6:ENST00000679846.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	83	2	2.03337	4.02293	6.01249	0.00851546	4.02459e-5	0.0833995	0.00539487
chr16	87393519	87393619	6416825	0	+	0.38	(0.378,0.408]	chr16	615617	2	SS5_PROX	SS5_PROX:INTRON	MAP1LC3B	ENSG00000140941.14	ENST00000650688.1:ENST00000570189.5:ENST00000565788.1:ENST00000268607.10:ENST00000564844.1:ENST00000564638.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	63	2	2.29798	4.022925	5.74787	0.0147606	2.21531e-4	0.106702	0.0136064
chr1	45566068	45566168	93144	0	+	0.42	(0.408,0.44]	chr1	12523	1	SS3_PROX	SS3_PROX:INTRON	AKR1A1	ENSG00000117448.14	ENST00000372070.7:ENST00000621846.4:ENST00000434299.5:ENST00000351829.9:ENST00000496999.5:ENST00000476957.5:ENST00000481885.5:ENST00000471651.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	45	2	3.08738	4.022775	4.95817	0.00478231	0.00372419	0.0636201	0.0535094
chr4	26337442	26337542	1936837	0	+	0.42	(0.408,0.44]	chr4	194354	141	INTRON	INTRON	RBPJ	ENSG00000168214.22	ENST00000512351.5:ENST00000681799.1:ENST00000681403.1:ENST00000342295.6:ENST00000512671.6:ENST00000506956.5:ENST00000345843.8:ENST00000361572.10:ENST00000514380.5:ENST00000514807.5:ENST00000348160.9:ENST00000681506.1:ENST00000509158.6:ENST00000691085.1:ENST00000692303.1:ENST00000681856.1:ENST00000513182.5:ENST00000681025.1:ENST00000681679.1:ENST00000680210.1:ENST00000355476.8:ENST00000680140.1:ENST00000511401.5:ENST00000680511.1:ENST00000510778.7:ENST00000679698.1:ENST00000679469.1:ENST00000681484.1:ENST00000505958.6:ENST00000507561.5:ENST00000514730.5:ENST00000507574.5:ENST00000514675.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	45	2	3.08738	4.022775	4.95817	0.00478231	0.00372419	0.0636201	0.0535094
chr1	92703921	92704021	507354	0	-	0.26	[0,0.28]	chr1	59870	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	EVI5	ENSG00000067208.16	ENST00000370331.5:ENST00000540033.2:ENST00000684568.2:ENST00000474806.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	57	2	2.57033	4.022735	5.47514	0.0305273	0.00354561	0.143385	0.0529186
chr12	12119261	12119359	5269550	0	-	0.428571	(0.408,0.44]	chr12	502275	34	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	LRP6	ENSG00000070018.9	ENST00000261349.9:ENST00000538239.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	45	2	3.02513	4.022705	5.02028	0.0059965	0.00303216	0.0700606	0.0493883
chr12	132735123	132735217	5449300	0	-	0.414894	(0.408,0.44]	chr12	521911	1	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	ANKLE2	ENSG00000176915.15	ENST00000357997.10:ENST00000539605.5:ENST00000542374.5:ENST00000505031.6:ENST00000439231.6:ENST00000538591.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	45	2	3.02513	4.022705	5.02028	0.0059965	0.00303216	0.0700606	0.0493883
chr3	48971829	48971927	1422001	0	+	0.418367	(0.408,0.44]	chr3	149537	6	INTRON	INTRON	ARIH2	ENSG00000177479.20	ENST00000449376.5:ENST00000490095.5:ENST00000356401.9:ENST00000495761.5:ENST00000452385.5:ENST00000465217.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	45	2	3.02513	4.022705	5.02028	0.0059965	0.00303216	0.0700606	0.0493883
chr6	10923642	10923730	2812127	0	+	0.409091	(0.408,0.44]	chr6	264620	5	INTRON	INTRON	SYCP2L	ENSG00000153157.13	ENST00000341041.8:ENST00000283141.11:ENST00000543878.5:ENST00000487561.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	45	2	3.02513	4.022705	5.02028	0.0059965	0.00303216	0.0700606	0.0493883
chr2	171001390	171001489	1262480	0	-	0.444444	(0.44,0.476]	chr2	133802	32	INTRON	INTRON	TLK1	ENSG00000198586.14	ENST00000431350.7:ENST00000360843.7:ENST00000359766.7:ENST00000521943.5:ENST00000434911.6:ENST00000409443.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	45	2	2.9586	4.022595	5.08659	0.00758318	0.00226401	0.0773151	0.0425438
chr22	37773482	37773582	7511538	0	+	0.45	(0.44,0.476]	chr22	767094	3	SS3_PROX	SS3_PROX:INTRON	TRIOBP	ENSG00000100106.22	ENST00000644935.1:ENST00000344404.10:ENST00000403663.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	45	2	2.9586	4.022595	5.08659	0.00758318	0.00226401	0.0773151	0.0425438
chr1	224316013	224316111	644780	0	-	0.489796	(0.476,0.515]	chr1	76193	25	INTRON	INTRON	NVL	ENSG00000143748.18	ENST00000391875.6:ENST00000469968.5:ENST00000482491.5:ENST00000281701.11:ENST00000469075.5:ENST00000340871.8:ENST00000467882.5:ENST00000492281.5:ENST00000488718.5:ENST00000436927.5:ENST00000470989.5:ENST00000470903.5:ENST00000461466.5:ENST00000461546.2:ENST00000468673.5:ENST00000487758.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	48	2	3.05152	4.02247	4.99342	0.0064848	0.00139274	0.0699952	0.0341261
chr8	22468253	22468353	3713591	0	+	0.5	(0.476,0.515]	chr8	344875	264	INTRON	INTRON	PPP3CC	ENSG00000120910.15	ENST00000518852.5:ENST00000240139.10:ENST00000289963.12:ENST00000397775.7:ENST00000522000.1	protein_coding	protein_coding	protein_coding	protein_coding	1	48	2	3.05152	4.02247	4.99342	0.0064848	0.00139274	0.0699952	0.0341261
chrX	151401837	151401937	7735156	0	+	0.46	(0.44,0.476]	chrX	791452	41	INTRON	INTRON	VMA21	ENSG00000160131.14	ENST00000477649.1:ENST00000370361.5:ENST00000330374.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	48	2	2.9195	4.022315000000001	5.12513	0.0102021	7.96486e-4	0.0850389	0.0258804
chr19	5666755	5666851	7005755	0	+	0.572917	(0.57,1]	chr19	695032	25	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	SAFB	ENSG00000160633.13	ENST00000589863.5:ENST00000588852.2:ENST00000292123.9:ENST00000592224.5:ENST00000454510.5:ENST00000591991.1:ENST00000592555.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	54	2	2.64588	4.02227	5.39866	3.49647e-4	2.7267e-5	0.0166791	0.00430583
chr1	8397547	8397647	369556	0	-	0.36	(0.35,0.378]	chr1	43438	312	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000377464.5:ENST00000400907.6:ENST00000476556.5:ENST00000656437.1:ENST00000488215.5:ENST00000460659.5:ENST00000492766.5:ENST00000465125.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	51	2	2.83709	4.022259999999999	5.20743	0.01435	7.78116e-4	0.0966737	0.0256531
chr13	95224339	95224439	5639101	0	-	0.35	(0.32,0.35]	chr13	537151	132	INTRON	INTRON	ABCC4	ENSG00000125257.16	ENST00000645237.2:ENST00000643051.1:ENST00000643842.1:ENST00000646439.1:ENST00000643816.1:ENST00000536256.3:ENST00000643556.1:ENST00000629385.1:ENST00000642524.1:ENST00000645532.1:ENST00000644471.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	67	2	2.85974	4.021945	5.18415	0.00333629	0.00186579	0.0512081	0.0399675
chr3	37288467	37288556	1396211	0	+	0.47191	(0.44,0.476]	chr3	146351	5	INTRON	INTRON	GOLGA4	ENSG00000144674.17	ENST00000435830.6:ENST00000444882.5:ENST00000356847.8:ENST00000450863.6:ENST00000361924.7:ENST00000429018.5:ENST00000419177.3:ENST00000437131.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	72	2	2.34775	4.021915	5.69608	0.00466011	2.01872e-4	0.0629753	0.0129814
chr6	37839905	37840005	2857234	0	+	0.3	(0.28,0.32]	chr6	270225	195	INTRON	INTRON	ZFAND3	ENSG00000156639.12	ENST00000287218.9:ENST00000373391.6:ENST00000474522.5	protein_coding	protein_coding	protein_coding	protein_coding	1	53	2	3.30893	4.021835	4.73474	0.0162835	0.00260504	0.101453	0.0470772
chr1	28028026	28028126	408395	0	-	0.29	(0.28,0.32]	chr1	49187	1	SS3_PROX	SS3_PROX:INTRON	EYA3	ENSG00000158161.16	ENST00000373871.8:ENST00000540618.5:ENST00000436342.6:ENST00000373864.5:ENST00000373863.3:ENST00000471498.5:ENST00000468665.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	23	2	4.01002	4.021735	4.03345	0.0704058	0.0434868	0.184298	0.162255
chr1	35625182	35625282	422152	0	-	0.31	(0.28,0.32]	chr1	50860	154	INTRON	INTRON	PSMB2	ENSG00000126067.12	ENST00000373237.4:ENST00000621781.4:ENST00000630477.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	23	2	4.01002	4.021735	4.03345	0.0704058	0.0434868	0.184298	0.162255
chr1	50804175	50804275	450694	0	-	0.32	(0.28,0.32]	chr1	54261	21	INTRON	INTRON	FAF1	ENSG00000185104.21	ENST00000396153.7:ENST00000487898.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	23	2	4.01002	4.021735	4.03345	0.0704058	0.0434868	0.184298	0.162255
chr1	207757642	207757742	304957	0	+	0.3	(0.28,0.32]	chr1	35093	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	CD46	ENSG00000117335.21	ENST00000695779.1:ENST00000695777.1:ENST00000695778.1:ENST00000496723.2:ENST00000695782.1:ENST00000695781.1:ENST00000695780.1:ENST00000636114.2:ENST00000367042.6:ENST00000322875.8:ENST00000322918.9:ENST00000354848.5:ENST00000357714.5:ENST00000358170.6:ENST00000367041.5:ENST00000367047.5:ENST00000695783.1:ENST00000695784.1:ENST00000469535.5:ENST00000493796.5:ENST00000360212.6:ENST00000480003.5:ENST00000695785.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	23	2	4.01002	4.021735	4.03345	0.0704058	0.0434868	0.184298	0.162255
chr1	245779294	245779393	673414	0	-	0.282828	(0.28,0.32]	chr1	79659	148	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000366517.5:ENST00000366516.5:ENST00000482592.5:ENST00000490107.6:ENST00000470510.5:ENST00000483072.5:ENST00000490322.1:ENST00000493441.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	23	2	4.01002	4.021735	4.03345	0.0704058	0.0434868	0.184298	0.162255
chr1	245936001	245936100	674988	0	-	0.313131	(0.28,0.32]	chr1	79699	53	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000366517.5:ENST00000490107.6:ENST00000493441.5:ENST00000488153.5:ENST00000492487.5:ENST00000391836.3:ENST00000464398.1:ENST00000453676.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	23	2	4.01002	4.021735	4.03345	0.0704058	0.0434868	0.184298	0.162255
chr10	21644292	21644392	4405523	0	+	0.29	(0.28,0.32]	chr10	406487	192	INTRON	INTRON	MLLT10	ENSG00000078403.17	ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000651298.1:ENST00000377059.7:ENST00000652258.1:ENST00000651382.1:ENST00000438473.6:ENST00000650921.1:ENST00000651405.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	23	2	4.01002	4.021735	4.03345	0.0704058	0.0434868	0.184298	0.162255
chr10	95385921	95386016	4667448	0	-	0.315789	(0.28,0.32]	chr10	430258	13	INTRON	INTRON	SORBS1	ENSG00000095637.23	ENST00000371227.8:ENST00000306402.10:ENST00000371249.6:ENST00000371247.7:ENST00000371246.6:ENST00000607232.5:ENST00000361941.7:ENST00000277982.9:ENST00000371245.7:ENST00000371241.5:ENST00000354106.7:ENST00000371239.5:ENST00000474353.6:ENST00000465489.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	23	2	4.01002	4.021735	4.03345	0.0704058	0.0434868	0.184298	0.162255
chr10	96891831	96891931	4503563	0	+	0.29	(0.28,0.32]	chr10	414550	53	INTRON	INTRON	LCOR	ENSG00000196233.14	ENST00000676067.1:ENST00000676257.1:ENST00000676187.1:ENST00000675151.1:ENST00000675687.1:ENST00000675251.1:ENST00000676123.1:ENST00000371103.8:ENST00000675471.1:ENST00000421806.4:ENST00000675902.1:ENST00000540664.6:ENST00000676414.1:ENST00000675537.1:ENST00000675117.1:ENST00000675125.1:ENST00000356016.7:ENST00000371097.8:ENST00000676381.1:ENST00000674796.1:ENST00000674725.1:ENST00000675971.1:ENST00000676373.1:ENST00000676314.1:ENST00000675915.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	23	2	4.01002	4.021735	4.03345	0.0704058	0.0434868	0.184298	0.162255
chr11	47532655	47532755	4950198	0	-	0.32	(0.28,0.32]	chr11	464246	80	INTRON	INTRON	CELF1	ENSG00000149187.19	ENST00000310513.10:ENST00000687097.1:ENST00000531165.5:ENST00000530151.5:ENST00000525841.5:ENST00000526419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	4.01002	4.021735	4.03345	0.0704058	0.0434868	0.184298	0.162255
chr11	74893660	74893759	4988647	0	-	0.282828	(0.28,0.32]	chr11	471326	297	INTRON	INTRON	XRRA1	ENSG00000166435.16	ENST00000530562.5:ENST00000340360.10:ENST00000321448.12:ENST00000684022.1:ENST00000531849.5:ENST00000527087.5:ENST00000531449.5:ENST00000529926.1:ENST00000528819.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	23	2	4.01002	4.021735	4.03345	0.0704058	0.0434868	0.184298	0.162255
chr11	77625166	77625262	4994215	0	-	0.3125	(0.28,0.32]	chr11	471930	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CLNS1A	ENSG00000074201.9	ENST00000525428.6:ENST00000525064.5:ENST00000263309.7:ENST00000532069.5:ENST00000528364.1:ENST00000527133.2:ENST00000527265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	23	2	4.01002	4.021735	4.03345	0.0704058	0.0434868	0.184298	0.162255
chr11	108682852	108682952	4858814	0	+	0.32	(0.28,0.32]	chr11	453444	29	INTRON	INTRON	DDX10	ENSG00000178105.12	ENST00000693015.1:ENST00000690021.1:ENST00000686283.1:ENST00000322536.8:ENST00000648124.1:ENST00000688583.1:ENST00000688536.1:ENST00000686617.1:ENST00000688976.1:ENST00000687072.1:ENST00000526794.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	23	2	4.01002	4.021735	4.03345	0.0704058	0.0434868	0.184298	0.162255
chr13	83026024	83026124	5633507	0	-	0.29	(0.28,0.32]	chr13	536804	2471	INTRON	INTRON	ENSG00000286385	ENSG00000286385.1	ENST00000663739.1	lncRNA	lncRNA	lncRNA	lncRNA	0	23	2	4.01002	4.021735	4.03345	0.0704058	0.0434868	0.184298	0.162255
chr14	77468686	77468760	5799486	0	+	0.297297	(0.28,0.32]	chr14	549427	2	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	AHSA1	ENSG00000100591.8	ENST00000555133.5:ENST00000535854.6:ENST00000216479.8:ENST00000555457.5:ENST00000555729.3:ENST00000555473.1:ENST00000556369.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	23	2	4.01002	4.021735	4.03345	0.0704058	0.0434868	0.184298	0.162255
chr14	81178035	81178134	5935461	0	-	0.292929	(0.28,0.32]	chr14	564109	27	UTR3	UTR3:EXON_MRNA	GTF2A1	ENSG00000165417.12	ENST00000553612.6	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	4.01002	4.021735	4.03345	0.0704058	0.0434868	0.184298	0.162255
chr15	56923696	56923796	6032162	0	+	0.3	(0.28,0.32]	chr15	574663	22	INTRON	INTRON	TCF12	ENSG00000140262.18	ENST00000438423.6:ENST00000267811.9:ENST00000333725.10:ENST00000560190.5:ENST00000559609.5:ENST00000558908.5:ENST00000557843.5:ENST00000557947.5:ENST00000561152.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	23	2	4.01002	4.021735	4.03345	0.0704058	0.0434868	0.184298	0.162255
chr17	31252141	31252240	6592754	0	+	0.292929	(0.28,0.32]	chr17	641227	23	UTR3	UTR3:EXON_MRNA:INTRON	NF1	ENSG00000196712.20	ENST00000696138.1:ENST00000356175.7:ENST00000691014.1:ENST00000358273.9:ENST00000579081.5:ENST00000495910.6:ENST00000456735.6:ENST00000493220.5:ENST00000696139.1:ENST00000466819.5:ENST00000479614.1:ENST00000687863.1:ENST00000696140.1:ENST00000696141.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	23	2	4.01002	4.021735	4.03345	0.0704058	0.0434868	0.184298	0.162255
chr17	51034691	51034790	6796148	0	-	0.30303	(0.28,0.32]	chr17	670990	26	INTRON	INTRON	SPAG9	ENSG00000008294.22	ENST00000262013.12:ENST00000510283.5:ENST00000505279.5:ENST00000357122.8:ENST00000514613.5:ENST00000505173.5:ENST00000576492.1:ENST00000510855.1:ENST00000511987.5:ENST00000502329.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	23	2	4.01002	4.021735	4.03345	0.0704058	0.0434868	0.184298	0.162255
chr17	54917551	54917650	6628167	0	+	0.282828	(0.28,0.32]	chr17	647485	2	INTRON	INTRON	TOM1L1	ENSG00000141198.16	ENST00000570371.5:ENST00000570965.5:ENST00000445275.6:ENST00000348161.8:ENST00000576932.5:ENST00000572158.5:ENST00000575882.6:ENST00000571319.5:ENST00000536554.5:ENST00000575333.5:ENST00000572576.5:ENST00000570977.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	23	2	4.01002	4.021735	4.03345	0.0704058	0.0434868	0.184298	0.162255
chr18	36838651	36838750	6892930	0	+	0.30303	(0.28,0.32]	chr18	683208	29	INTRON	INTRON	KIAA1328	ENSG00000150477.15	ENST00000592611.5:ENST00000280020.10:ENST00000592521.5:ENST00000590617.5:ENST00000587139.5:ENST00000591619.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	23	2	4.01002	4.021735	4.03345	0.0704058	0.0434868	0.184298	0.162255
chr19	17170942	17171042	7028910	0	+	0.29	(0.28,0.32]	chr19	699642	25	INTRON	INTRON	MYO9B	ENSG00000099331.14	ENST00000682292.1:ENST00000595618.5:ENST00000594824.5:ENST00000397274.6:ENST00000595641.5	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	4.01002	4.021735	4.03345	0.0704058	0.0434868	0.184298	0.162255
chr19	36511660	36511757	7174334	0	-	0.28866000000000003	(0.28,0.32]	chr19	725022	11	UTR3	UTR3:EXON_MRNA	ZNF260	ENSG00000254004.7	ENST00000523638.6:ENST00000592282.1	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	4.01002	4.021735	4.03345	0.0704058	0.0434868	0.184298	0.162255
chr2	121602172	121602272	1221916	0	-	0.3	(0.28,0.32]	chr2	130051	715	INTRON	INTRON	CLASP1	ENSG00000074054.20	ENST00000263710.8:ENST00000397587.7:ENST00000541377.5:ENST00000409078.8:ENST00000455322.6	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	4.01002	4.021735	4.03345	0.0704058	0.0434868	0.184298	0.162255
chr2	191854968	191855068	961089	0	+	0.32	(0.28,0.32]	chr2	104333	78	INTRON	INTRON	CAVIN2-AS1	ENSG00000233766.8	ENST00000424116.7	lncRNA	lncRNA	lncRNA	lncRNA	0	23	2	4.01002	4.021735	4.03345	0.0704058	0.0434868	0.184298	0.162255
chr20	35860549	35860647	7263780	0	+	0.285714	(0.28,0.32]	chr20	738119	18	INTRON	INTRON	PHF20	ENSG00000025293.17	ENST00000461122.5:ENST00000374012.8:ENST00000374000.8:ENST00000339089.10:ENST00000481202.5:ENST00000449988.1:ENST00000486408.5:ENST00000495338.5:ENST00000496305.5:ENST00000480940.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	23	2	4.01002	4.021735	4.03345	0.0704058	0.0434868	0.184298	0.162255
chr21	6658018	6658118	7425752	0	-	0.32	(0.28,0.32]	chr21	757494	198	INTRON	INTRON	ENSG00000280145	ENSG00000280145.3	ENST00000625185.3:ENST00000623106.3:ENST00000624846.3:ENST00000623313.1:ENST00000624965.1	lncRNA	lncRNA	lncRNA	lncRNA	0	23	2	4.01002	4.021735	4.03345	0.0704058	0.0434868	0.184298	0.162255
chr22	19339616	19339715	7553479	0	-	0.292929	(0.28,0.32]	chr22	772184	77	INTRON	INTRON	HIRA	ENSG00000100084.14	ENST00000263208.5:ENST00000340170.8	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	4.01002	4.021735	4.03345	0.0704058	0.0434868	0.184298	0.162255
chr22	40849450	40849547	7590647	0	-	0.319588	(0.28,0.32]	chr22	777274	7	INTRON	INTRON	ST13	ENSG00000100380.15	ENST00000216218.8:ENST00000455824.1:ENST00000411695.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	23	2	4.01002	4.021735	4.03345	0.0704058	0.0434868	0.184298	0.162255
chr3	120076985	120077084	1795283	0	-	0.30303	(0.28,0.32]	chr3	180286	23	INTRON	INTRON	GSK3B	ENSG00000082701.17	ENST00000264235.13:ENST00000316626.6:ENST00000678439.1:ENST00000650344.2:ENST00000677788.1:ENST00000678245.1:ENST00000677169.1:ENST00000677128.1:ENST00000677530.1:ENST00000677034.1:ENST00000679131.1:ENST00000676743.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	23	2	4.01002	4.021735	4.03345	0.0704058	0.0434868	0.184298	0.162255
chr4	32084166	32084266	1942290	0	+	0.29	(0.28,0.32]	chr4	194727	860	INTRON	INTRON	LINC02506	ENSG00000251129.3	ENST00000662669.1:ENST00000665582.2:ENST00000667252.2:ENST00000660373.2:ENST00000684849.1:ENST00000513211.2:ENST00000659613.1:ENST00000657576.1:ENST00000686730.1:ENST00000685407.1:ENST00000685455.1:ENST00000655951.1	lncRNA	lncRNA	lncRNA	lncRNA	0	23	2	4.01002	4.021735	4.03345	0.0704058	0.0434868	0.184298	0.162255
chr4	48532151	48532251	2137072	0	-	0.29	(0.28,0.32]	chr4	210705	4	INTRON	INTRON	FRYL	ENSG00000075539.15	ENST00000358350.9:ENST00000507873.7:ENST00000503238.6:ENST00000641795.1:ENST00000514617.5:ENST00000513401.5:ENST00000512297.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	23	2	4.01002	4.021735	4.03345	0.0704058	0.0434868	0.184298	0.162255
chr4	153550241	153550341	2068092	0	+	0.3	(0.28,0.32]	chr4	204573	1	SS5_PROX	SS5_PROX:INTRON	TMEM131L	ENSG00000121210.16	ENST00000409663.7:ENST00000445960.5:ENST00000409959.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	23	2	4.01002	4.021735	4.03345	0.0704058	0.0434868	0.184298	0.162255
chr5	91372616	91372711	2674875	0	-	0.305263	(0.28,0.32]	chr5	253083	8	INTRON	INTRON	ARRDC3	ENSG00000113369.9	ENST00000265138.4:ENST00000511391.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	23	2	4.01002	4.021735	4.03345	0.0704058	0.0434868	0.184298	0.162255
chr5	150716921	150717015	2751461	0	-	0.308511	(0.28,0.32]	chr5	259209	9	INTRON	INTRON	DCTN4	ENSG00000132912.13	ENST00000447998.7:ENST00000424236.5:ENST00000446090.6:ENST00000627368.2	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	4.01002	4.021735	4.03345	0.0704058	0.0434868	0.184298	0.162255
chr6	4868897	4868997	2791788	0	+	0.29	(0.28,0.32]	chr6	263602	322	INTRON	INTRON	CDYL	ENSG00000153046.18	ENST00000328908.9:ENST00000491864.1:ENST00000440139.5:ENST00000483019.1:ENST00000397588.8:ENST00000472453.5:ENST00000449732.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	23	2	4.01002	4.021735	4.03345	0.0704058	0.0434868	0.184298	0.162255
chr6	15421549	15421649	2824704	0	+	0.31	(0.28,0.32]	chr6	265204	108	INTRON	INTRON	JARID2	ENSG00000008083.14	ENST00000341776.7:ENST00000397311.4	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	4.01002	4.021735	4.03345	0.0704058	0.0434868	0.184298	0.162255
chr6	111450614	111450714	3192034	0	-	0.31	(0.28,0.32]	chr6	297346	338	INTRON	INTRON	REV3L	ENSG00000009413.16	ENST00000422377.5:ENST00000434009.5:ENST00000368802.8:ENST00000435970.5:ENST00000358835.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	23	2	4.01002	4.021735	4.03345	0.0704058	0.0434868	0.184298	0.162255
chr6	157905328	157905428	3016591	0	+	0.31	(0.28,0.32]	chr6	281399	29	INTRON	INTRON	SNX9	ENSG00000130340.17	ENST00000680863.1:ENST00000679814.1:ENST00000680464.1:ENST00000681186.1:ENST00000679732.1:ENST00000681183.1:ENST00000681534.1:ENST00000681651.1:ENST00000680089.1:ENST00000680078.1:ENST00000680974.1:ENST00000680095.1:ENST00000680015.1:ENST00000681138.1:ENST00000392185.8:ENST00000679790.1:ENST00000680495.1:ENST00000679691.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	23	2	4.01002	4.021735	4.03345	0.0704058	0.0434868	0.184298	0.162255
chr7	45060295	45060395	3316515	0	+	0.31	(0.28,0.32]	chr7	308191	215	INTRON	INTRON	CCM2	ENSG00000136280.17	ENST00000461377.5:ENST00000544363.5:ENST00000541586.5:ENST00000478582.5:ENST00000258781.11:ENST00000488727.5:ENST00000648329.1:ENST00000478169.5:ENST00000475551.5:ENST00000381112.7:ENST00000474617.1:ENST00000480658.5:ENST00000492883.5:ENST00000482714.5:ENST00000472223.5:ENST00000476594.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	23	2	4.01002	4.021735	4.03345	0.0704058	0.0434868	0.184298	0.162255
chr7	99129873	99129973	3583003	0	-	0.29	(0.28,0.32]	chr7	333710	83	INTRON	INTRON	SMURF1	ENSG00000198742.10	ENST00000361368.7:ENST00000361125.1:ENST00000472627.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	23	2	4.01002	4.021735	4.03345	0.0704058	0.0434868	0.184298	0.162255
chr7	130522732	130522832	3639490	0	-	0.32	(0.28,0.32]	chr7	338574	137	INTRON	INTRON	COPG2	ENSG00000158623.14	ENST00000425248.5:ENST00000617523.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	23	2	4.01002	4.021735	4.03345	0.0704058	0.0434868	0.184298	0.162255
chr7	139666686	139666785	3657721	0	-	0.292929	(0.28,0.32]	chr7	339537	346	INTRON	INTRON	HIPK2	ENSG00000064393.16	ENST00000406875.8:ENST00000428878.6:ENST00000342645.7	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	4.01002	4.021735	4.03345	0.0704058	0.0434868	0.184298	0.162255
chr8	6736206	6736304	3695283	0	+	0.295918	(0.28,0.32]	chr8	342847	32	INTRON	INTRON	AGPAT5	ENSG00000155189.12	ENST00000285518.11:ENST00000523234.5:ENST00000518327.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	23	2	4.01002	4.021735	4.03345	0.0704058	0.0434868	0.184298	0.162255
chr8	42522292	42522391	3942385	0	-	0.313131	(0.28,0.32]	chr8	361320	198	INTRON	INTRON	SLC20A2	ENSG00000168575.10	ENST00000342228.7:ENST00000520179.5:ENST00000524211.1:ENST00000518717.1:ENST00000518384.1:ENST00000524237.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	23	2	4.01002	4.021735	4.03345	0.0704058	0.0434868	0.184298	0.162255
chr8	126235918	126236018	4050991	0	-	0.3	(0.28,0.32]	chr8	369353	1225	INTRON	INTRON	LINC00861	ENSG00000245164.9	ENST00000651482.1	lncRNA	lncRNA	lncRNA	lncRNA	0	23	2	4.01002	4.021735	4.03345	0.0704058	0.0434868	0.184298	0.162255
chr9	100083118	100083218	4308489	0	-	0.31	(0.28,0.32]	chr9	395811	226	INTRON	INTRON	ERP44	ENSG00000023318.9	ENST00000262455.7:ENST00000685319.1:ENST00000691188.1:ENST00000687025.1:ENST00000687093.1:ENST00000690739.1:ENST00000687017.1:ENST00000690317.1:ENST00000691823.1:ENST00000686275.1:ENST00000689406.1:ENST00000684842.1:ENST00000688230.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	23	2	4.01002	4.021735	4.03345	0.0704058	0.0434868	0.184298	0.162255
chr9	137824783	137824882	4225599	0	+	0.313131	(0.28,0.32]	chr9	388414	48	INTRON	INTRON	EHMT1	ENSG00000181090.21	ENST00000460843.6:ENST00000637161.1:ENST00000637261.1:ENST00000462942.3:ENST00000637891.1:ENST00000494249.5:ENST00000637748.1:ENST00000475564.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	23	2	4.01002	4.021735	4.03345	0.0704058	0.0434868	0.184298	0.162255
chrX	46922925	46923025	7653679	0	+	0.29	(0.28,0.32]	chrX	783013	96	INTRON	INTRON	JADE3	ENSG00000102221.14	ENST00000611250.4:ENST00000424392.5:ENST00000614628.5:ENST00000455411.1	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	4.01002	4.021735	4.03345	0.0704058	0.0434868	0.184298	0.162255
chr1	12343451	12343551	29407	0	+	0.27	[0,0.28]	chr1	3608	4	SS5_PROX	SS5_PROX:INTRON	VPS13D	ENSG00000048707.15	ENST00000620676.6:ENST00000613099.4:ENST00000011700.10:ENST00000646917.1:ENST00000460333.5:ENST00000643711.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	142	2	3.57586	4.02166	4.46746	0.00187793	1.62938e-5	0.039073	0.00304426
chr15	48802891	48802990	6166607	0	-	0.40404	(0.378,0.408]	chr15	587695	45	INTRON	INTRON	CEP152	ENSG00000103995.14	ENST00000380950.7:ENST00000399334.7:ENST00000325747.9:ENST00000560322.5:ENST00000559444.1:ENST00000558591.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:non_stop_decay	1	47	2	3.3797	4.02154	4.66338	0.0103469	0.00154501	0.0850389	0.0362716
chr3	172201287	172201387	1561170	0	+	0.43	(0.408,0.44]	chr3	161562	141	INTRON	INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000469491.5:ENST00000336824.8:ENST00000416957.5:ENST00000478016.1:ENST00000443501.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	61	2	2.906	4.02151	5.13702	0.00202889	0.00131817	0.04086	0.0333932
chr20	47238563	47238660	7348316	0	-	0.340206	(0.32,0.35]	chr20	749266	14	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000467200.6:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000468376.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	116	2	3.91666	4.021505	4.12635	1.54585e-4	1.07786e-4	0.0106835	0.00931098
chr6	4789005	4789104	2790988	0	+	0.444444	(0.44,0.476]	chr6	263598	118	INTRON	INTRON	CDYL	ENSG00000153046.18	ENST00000328908.9:ENST00000491864.1:ENST00000440139.5:ENST00000483019.1:ENST00000397588.8:ENST00000472453.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	99	2	3.74925	4.02128	4.29331	4.08974e-4	1.36744e-5	0.0185763	0.00275994
chr1	228233210	228233309	331486	0	+	0.373737	(0.35,0.378]	chr1	38260	81	INTRON	INTRON	OBSCN	ENSG00000154358.23	ENST00000570156.7:ENST00000680850.1:ENST00000284548.16:ENST00000422127.5:ENST00000636476.2:ENST00000662438.1:ENST00000366704.2:ENST00000668066.1	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.97032	4.02109	4.07186	0.0578667	0.0279478	0.167723	0.137011
chr10	34800580	34800680	4600148	0	-	0.37	(0.35,0.378]	chr10	423730	1038	INTRON	INTRON	PARD3	ENSG00000148498.17	ENST00000545260.5:ENST00000545693.5:ENST00000346874.9:ENST00000350537.9:ENST00000374788.8:ENST00000374789.8:ENST00000374790.8:ENST00000374794.8:ENST00000374776.6:ENST00000340077.9:ENST00000374773.6	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.97032	4.02109	4.07186	0.0578667	0.0279478	0.167723	0.137011
chr11	46561443	46561543	4946934	0	-	0.36	(0.35,0.378]	chr11	463525	120	INTRON	INTRON	AMBRA1	ENSG00000110497.15	ENST00000683756.1:ENST00000534300.5:ENST00000533727.5:ENST00000314845.7:ENST00000458649.6:ENST00000528950.1:ENST00000531542.1:ENST00000526606.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	22	2	3.97032	4.02109	4.07186	0.0578667	0.0279478	0.167723	0.137011
chr12	32682479	32682579	5109776	0	+	0.37	(0.35,0.378]	chr12	482431	21	INTRON	INTRON	DNM1L	ENSG00000087470.19	ENST00000414834.6:ENST00000452533.6:ENST00000358214.9:ENST00000553257.6:ENST00000549701.6:ENST00000548671.5:ENST00000266481.10:ENST00000551076.5:ENST00000550011.5:ENST00000546649.5:ENST00000547312.5:ENST00000413295.6:ENST00000434676.6:ENST00000547932.5:ENST00000550154.5:ENST00000551476.5:ENST00000551643.5:ENST00000381000.8:ENST00000548750.5:ENST00000549926.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	22	2	3.97032	4.02109	4.07186	0.0578667	0.0279478	0.167723	0.137011
chr15	59645518	59645617	6194330	0	-	0.353535	(0.35,0.378]	chr15	590149	8	INTRON	INTRON	GTF2A2:ENSG00000227161	ENSG00000140307.11:ENSG00000227161.1	ENST00000396060.7:ENST00000267869.8:ENST00000396064.7:ENST00000396063.5:ENST00000396061.5:ENST00000484743.5:ENST00000559141.1:ENST00000559706.1:ENST00000441746.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA:processed_transcript	0	22	2	3.97032	4.02109	4.07186	0.0578667	0.0279478	0.167723	0.137011
chr15	82604628	82604727	6248072	0	-	0.353535	(0.35,0.378]	chr15	596252	208	INTRON	INTRON	CPEB1	ENSG00000214575.10	ENST00000684509.1:ENST00000614918.4:ENST00000611031.4:ENST00000617958.4:ENST00000615198.4:ENST00000620182.4:ENST00000617522.4:ENST00000569257.5:ENST00000567678.1	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.97032	4.02109	4.07186	0.0578667	0.0279478	0.167723	0.137011
chr16	22015198	22015298	6319938	0	+	0.36	(0.35,0.378]	chr16	605040	64	INTRON	INTRON	MOSMO	ENSG00000185716.12	ENST00000567004.1:ENST00000542527.7:ENST00000331057.8:ENST00000569656.5:ENST00000562695.1:ENST00000562186.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	22	2	3.97032	4.02109	4.07186	0.0578667	0.0279478	0.167723	0.137011
chr16	68209142	68209241	6371478	0	+	0.353535	(0.35,0.378]	chr16	612250	83	INTRON	INTRON	NFATC3	ENSG00000072736.19	ENST00000563319.5:ENST00000569766.5:ENST00000566301.5:ENST00000575270.5:ENST00000346183.8:ENST00000349223.9:ENST00000329524.8:ENST00000562926.5:ENST00000570212.5:ENST00000563796.5:ENST00000567152.5:ENST00000563288.5:ENST00000535127.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	22	2	3.97032	4.02109	4.07186	0.0578667	0.0279478	0.167723	0.137011
chr17	4236787	4236886	6711103	0	-	0.363636	(0.35,0.378]	chr17	657671	5	INTRON	INTRON	ANKFY1	ENSG00000185722.18	ENST00000341657.9:ENST00000648043.1:ENST00000570535.5:ENST00000574367.5:ENST00000572412.5:ENST00000570934.5:ENST00000575955.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	22	2	3.97032	4.02109	4.07186	0.0578667	0.0279478	0.167723	0.137011
chr17	58758160	58758259	6637666	0	+	0.353535	(0.35,0.378]	chr17	648237	13	INTRON	INTRON	PPM1E	ENSG00000175175.6	ENST00000308249.4	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.97032	4.02109	4.07186	0.0578667	0.0279478	0.167723	0.137011
chr2	138479538	138479638	1235340	0	-	0.37	(0.35,0.378]	chr2	131479	19	INTRON	INTRON	SPOPL-DT	ENSG00000228043.5	ENST00000431985.5:ENST00000414911.1	lncRNA	lncRNA	lncRNA	lncRNA	0	22	2	3.97032	4.02109	4.07186	0.0578667	0.0279478	0.167723	0.137011
chr2	161229878	161229977	901039	0	+	0.363636	(0.35,0.378]	chr2	99667	48	INTRON	INTRON	TANK	ENSG00000136560.14	ENST00000259075.6:ENST00000429217.5:ENST00000406287.5:ENST00000402568.5:ENST00000392749.7:ENST00000405852.5:ENST00000468831.5:ENST00000437623.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	22	2	3.97032	4.02109	4.07186	0.0578667	0.0279478	0.167723	0.137011
chr20	47557993	47558093	7281558	0	+	0.36	(0.35,0.378]	chr20	740469	556	INTRON	INTRON	NCOA3	ENSG00000124151.19	ENST00000371998.8:ENST00000372004.7:ENST00000371997.3	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.97032	4.02109	4.07186	0.0578667	0.0279478	0.167723	0.137011
chr22	45165209	45165286	7529871	0	+	0.376623	(0.35,0.378]	chr22	769856	3	SS5_PROX	SS5_PROX:INTRON	NUP50	ENSG00000093000.19	ENST00000347635.9:ENST00000407019.6:ENST00000424634.5:ENST00000497960.5:ENST00000417702.5:ENST00000461437.5:ENST00000430547.5:ENST00000434760.5:ENST00000484186.5:ENST00000445721.5:ENST00000493456.5:ENST00000396096.6:ENST00000461194.5:ENST00000432340.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	22	2	3.97032	4.02109	4.07186	0.0578667	0.0279478	0.167723	0.137011
chr3	49331592	49331691	1693425	0	-	0.363636	(0.35,0.378]	chr3	173653	34	INTRON	INTRON	USP4	ENSG00000114316.13	ENST00000265560.9:ENST00000351842.8:ENST00000486549.5:ENST00000416417.5:ENST00000415188.1:ENST00000464168.5:ENST00000491791.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	22	2	3.97032	4.02109	4.07186	0.0578667	0.0279478	0.167723	0.137011
chr4	79232340	79232440	1985752	0	+	0.37	(0.35,0.378]	chr4	198609	35	INTRON	INTRON	LINC01088	ENSG00000249307.8	ENST00000509088.6:ENST00000658852.1:ENST00000651041.1:ENST00000510667.5:ENST00000513153.5:ENST00000515597.1:ENST00000507476.5:ENST00000512130.5:ENST00000692734.1:ENST00000437737.3	lncRNA	lncRNA	lncRNA	lncRNA	0	22	2	3.97032	4.02109	4.07186	0.0578667	0.0279478	0.167723	0.137011
chr6	129600341	129600441	3217702	0	-	0.37	(0.35,0.378]	chr6	299072	3	SS5_PROX	SS5_PROX:INTRON	ARHGAP18	ENSG00000146376.11	ENST00000368149.3	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.97032	4.02109	4.07186	0.0578667	0.0279478	0.167723	0.137011
chr7	819391	819490	3268493	0	+	0.353535	(0.35,0.378]	chr7	303534	15	INTRON	INTRON	SUN1	ENSG00000164828.18	ENST00000452783.6:ENST00000389574.7:ENST00000457378.6:ENST00000450538.5:ENST00000427969.5:ENST00000435699.5:ENST00000440380.5:ENST00000439679.5:ENST00000424128.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	22	2	3.97032	4.02109	4.07186	0.0578667	0.0279478	0.167723	0.137011
chr7	107545115	107545215	3612838	0	-	0.37	(0.35,0.378]	chr7	336704	174	INTRON	INTRON	COG5	ENSG00000164597.15	ENST00000297135.9:ENST00000347053.8:ENST00000393603.7:ENST00000475638.6:ENST00000605888.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	22	2	3.97032	4.02109	4.07186	0.0578667	0.0279478	0.167723	0.137011
chr7	121200325	121200425	3395772	0	+	0.37	(0.35,0.378]	chr7	317781	503	INTRON	INTRON	CPED1	ENSG00000106034.18	ENST00000310396.10:ENST00000450913.6:ENST00000423795.5:ENST00000466055.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	22	2	3.97032	4.02109	4.07186	0.0578667	0.0279478	0.167723	0.137011
chr8	105393514	105393614	3837992	0	+	0.36	(0.35,0.378]	chr8	354041	52	INTRON	INTRON	ZFPM2	ENSG00000169946.14	ENST00000518180.1:ENST00000407775.7:ENST00000520492.5:ENST00000520027.5:ENST00000524235.5:ENST00000511341.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	22	2	3.97032	4.02109	4.07186	0.0578667	0.0279478	0.167723	0.137011
chrX	24727377	24727474	7632032	0	+	0.350515	(0.35,0.378]	chrX	781653	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	POLA1	ENSG00000101868.13	ENST00000672178.1:ENST00000379068.8:ENST00000677890.1:ENST00000379059.7:ENST00000611764.2:ENST00000493342.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	22	2	3.97032	4.02109	4.07186	0.0578667	0.0279478	0.167723	0.137011
chrX	107130110	107130210	7859720	0	-	0.36	(0.35,0.378]	chrX	801266	54	INTRON	INTRON	NUP62CL	ENSG00000198088.10	ENST00000372466.8:ENST00000484614.5:ENST00000432145.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	22	2	3.97032	4.02109	4.07186	0.0578667	0.0279478	0.167723	0.137011
chr2	135066177	135066277	872808	0	+	0.4	(0.378,0.408]	chr2	97740	35	INTRON	INTRON	RAB3GAP1	ENSG00000115839.19	ENST00000539493.3:ENST00000688088.1:ENST00000693554.1:ENST00000690785.1:ENST00000689880.1:ENST00000264158.13:ENST00000690208.1:ENST00000691478.1:ENST00000686114.1:ENST00000685967.1:ENST00000442034.5:ENST00000687199.1:ENST00000691339.1:ENST00000688182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	50	2	2.60296	4.02094	5.43892	0.0267851	2.28412e-4	0.123349	0.0133228
chr3	155832473	155832572	1844125	0	-	0.40404	(0.378,0.408]	chr3	185541	22	INTRON	INTRON	SLC33A1	ENSG00000169359.16	ENST00000643144.2:ENST00000359479.7:ENST00000468581.2:ENST00000646424.1:ENST00000644094.1:ENST00000642438.1:ENST00000644855.1:ENST00000475842.5:ENST00000496772.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	50	2	2.60296	4.02094	5.43892	0.0267851	2.28412e-4	0.123349	0.0133228
chr1	45686050	45686120	440584	0	-	0.557143	(0.515,0.57]	chr1	53367	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GPBP1L1	ENSG00000159592.11	ENST00000290795.7:ENST00000355105.8:ENST00000488278.5:ENST00000480941.1:ENST00000480083.5:ENST00000493083.5:ENST00000460859.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	45	2	3.35609	4.020885	4.68568	0.00270027	0.00174131	0.0479115	0.0375363
chr7	152172537	152172636	3678601	0	-	0.535354	(0.515,0.57]	chr7	341450	8	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000360104.8:ENST00000262189.11:ENST00000680877.1:ENST00000679560.1:ENST00000683120.1:ENST00000679393.1:ENST00000683200.1:ENST00000684261.1:ENST00000682283.1:ENST00000473186.5:ENST00000679882.1:ENST00000683397.1:ENST00000684307.1:ENST00000683625.1:ENST00000684398.1:ENST00000683670.1:ENST00000680969.1:ENST00000681033.1:ENST00000682176.1:ENST00000683159.1:ENST00000558665.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	45	2	3.35609	4.020885	4.68568	0.00270027	0.00174131	0.0479115	0.0375363
chr7	118185158	118185255	3393156	0	+	0.268041	[0,0.28]	chr7	317576	10	UTR5	UTR5:EXON_MRNA:SS3_PROX:INTRON	LSM8	ENSG00000128534.8	ENST00000424702.1:ENST00000422760.1:ENST00000249299.7:ENST00000411938.1	protein_coding	protein_coding	protein_coding	protein_coding	2	75	2	2.45042	4.02082	5.59122	0.010819	0.00247649	0.0920575	0.0446195
chr6	42620751	42620851	2865638	0	+	0.39	(0.378,0.408]	chr6	271081	5	INTRON	INTRON	UBR2	ENSG00000024048.11	ENST00000372899.6:ENST00000372901.2	protein_coding	protein_coding	protein_coding	protein_coding	1	51	2	2.46373	4.020775	5.57782	0.0382831	1.18586e-4	0.141795	0.00930884
chr19	9814471	9814571	7133992	0	-	0.38	(0.378,0.408]	chr19	719000	1	SS5_ADJ	SS5_ADJ:SS3_PROX:SS5_PROX:INTRON	FBXL12	ENSG00000127452.9	ENST00000589626.5:ENST00000586651.5:ENST00000247977.9:ENST00000588922.5:ENST00000585379.5:ENST00000592732.5:ENST00000589438.1:ENST00000592067.1:ENST00000590808.1:ENST00000590277.1:ENST00000586469.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	47	2	2.71183	4.020754999999999	5.32968	0.0170789	0.00119786	0.110899	0.0315806
chr7	90369066	90369165	3347486	0	+	0.515152	(0.476,0.515]	chr7	311993	135	INTRON	INTRON	GTPBP10	ENSG00000105793.16	ENST00000453512.5:ENST00000421719.5:ENST00000426366.5:ENST00000450619.5:ENST00000257659.12:ENST00000417207.5:ENST00000380058.7:ENST00000222511.11:ENST00000439832.5:ENST00000474503.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	45	2	3.13389	4.02075	4.90761	0.00405473	0.00386428	0.0578376	0.0542786
chr19	53156394	53156493	7210904	0	-	0.414141	(0.408,0.44]	chr19	731933	22	INTRON	INTRON	ZNF347	ENSG00000197937.13	ENST00000601804.5:ENST00000334197.12:ENST00000452676.6:ENST00000601469.2:ENST00000597183.5:ENST00000595710.1:ENST00000599096.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	46	2	2.74518	4.02065	5.29612	0.0152229	0.00113523	0.108535	0.0307488
chr7	127971779	127971879	3405619	0	+	0.51	(0.476,0.515]	chr7	318177	222	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000486037.1:ENST00000484767.5:ENST00000492840.1:ENST00000470723.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	45	2	2.94692	4.020575	5.09423	0.00794331	0.00204588	0.0797304	0.04086
chr10	21596239	21596339	4405039	0	+	0.3	(0.28,0.32]	chr10	406466	4	INTRON	INTRON	MLLT10	ENSG00000078403.17	ENST00000651097.1:ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000650772.1:ENST00000651298.1:ENST00000495130.5:ENST00000377059.7:ENST00000652258.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	85	2	2.56291	4.02035	5.47779	0.00227849	0.00187048	0.0437013	0.0390476
chrX	44897085	44897185	7648841	0	+	0.32	(0.28,0.32]	chrX	782726	227	INTRON	INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000675440.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000621147.5:ENST00000475233.1:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	85	2	2.56291	4.02035	5.47779	0.00227849	0.00187048	0.0437013	0.0390476
chr22	49554566	49554666	7601625	0	-	0.36	(0.35,0.378]	chr22	778566	1130	INTRON	INTRON	MIR3667HG	ENSG00000188511.13	ENST00000414287.5:ENST00000416411.1	lncRNA	lncRNA	lncRNA	lncRNA	1	51	2	2.72497	4.020265	5.31556	0.0198266	4.97087e-4	0.109608	0.0201536
chr17	31998059	31998157	6596302	0	+	0.418367	(0.408,0.44]	chr17	641615	8	INTRON	INTRON	SUZ12	ENSG00000178691.11	ENST00000322652.10:ENST00000580398.1:ENST00000578106.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	45	2	3.14706	4.020165	4.89327	0.00458906	0.00382411	0.0595107	0.0562562
chr1	40071812	40071905	79952	0	+	0.376344	(0.35,0.378]	chr1	10399	4	UTR3	UTR3:EXON_MRNA	CAP1	ENSG00000131236.18	ENST00000372797.7:ENST00000372802.5:ENST00000372792.7:ENST00000372805.8:ENST00000340450.7	protein_coding	protein_coding	protein_coding	protein_coding	1	51	2	2.89003	4.0200949999999995	5.15016	0.0122391	9.78549e-4	0.0910127	0.0287765
chr19	45830883	45830978	7193525	0	-	0.357895	(0.35,0.378]	chr19	728599	1	SS5_PROX	SS5_PROX:INTRON	SYMPK	ENSG00000125755.19	ENST00000245934.12:ENST00000593504.5:ENST00000600237.5:ENST00000599460.5:ENST00000599814.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	51	2	2.89003	4.0200949999999995	5.15016	0.0122391	9.78549e-4	0.0910127	0.0287765
chr8	31142041	31142125	3729041	0	+	0.416667	(0.408,0.44]	chr8	346663	3	SS5_PROX	SS5_PROX:INTRON	WRN	ENSG00000165392.11	ENST00000650667.1:ENST00000298139.7:ENST00000521620.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	60	2	2.69457	4.020025	5.34548	0.00331036	9.40657e-4	0.0527031	0.0280776
chr8	116743579	116743679	4034110	0	-	0.42	(0.408,0.44]	chr8	368079	59	INTRON	INTRON	EIF3H	ENSG00000147677.12	ENST00000521861.6:ENST00000276682.8:ENST00000518949.5:ENST00000518995.5:ENST00000522800.5:ENST00000518034.5:ENST00000517974.1:ENST00000522453.1:ENST00000519046.5:ENST00000520813.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	45	2	2.96007	4.01995	5.07983	0.00753901	0.00247652	0.0773151	0.0446195
chr9	92637002	92637101	4287910	0	-	0.434343	(0.408,0.44]	chr9	394408	13	INTRON	INTRON	IPPK	ENSG00000127080.10	ENST00000287996.8:ENST00000375522.1	protein_coding	protein_coding	protein_coding	protein_coding	1	45	2	2.96007	4.01995	5.07983	0.00753901	0.00247652	0.0773151	0.0446195
chr9	34012454	34012551	4245482	0	-	0.463918	(0.44,0.476]	chr9	390480	4	INTRON	INTRON	UBAP2	ENSG00000137073.24	ENST00000379238.7:ENST00000683659.1:ENST00000682239.1:ENST00000683140.1:ENST00000682209.1:ENST00000681980.1:ENST00000360802.6:ENST00000683252.1:ENST00000684158.1:ENST00000682914.1:ENST00000683717.1:ENST00000379239.9:ENST00000683084.1:ENST00000684754.1:ENST00000629575.2:ENST00000684298.1:ENST00000412543.6:ENST00000480885.5:ENST00000459988.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	73	2	2.63962	4.01981	5.4	0.00126329	7.02611e-4	0.0329641	0.024224
chr6	30601453	30601548	3077182	0	-	0.547368	(0.515,0.57]	chr6	286213	12	UTR3	UTR3:EXON_MRNA	PPP1R10	ENSG00000204569.10	ENST00000376511.7	protein_coding	protein_coding	protein_coding	protein_coding	1	47	2	3.53844	4.01973	4.50102	0.00510768	7.92613e-4	0.0646039	0.0259663
chr14	101764653	101764753	5818523	0	+	0.42	(0.408,0.44]	chr14	551814	1	SS3_PROX	SS3_PROX:INTRON	PPP2R5C	ENSG00000078304.20	ENST00000694906.1:ENST00000422945.6:ENST00000554442.5:ENST00000556068.5:ENST00000556260.6:ENST00000328724.9:ENST00000554504.1:ENST00000553890.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	123	2	1.86724	4.0196950000000005	6.17215	0.00313968	2.28416e-5	0.0514466	0.00389868
chr2	190933444	190933541	960031	0	+	0.278351	[0,0.28]	chr2	104252	7	UTR3	UTR3:EXON_MRNA:INTRON	GLS	ENSG00000115419.13	ENST00000320717.8:ENST00000338435.8:ENST00000457316.5:ENST00000409428.5:ENST00000412247.1	protein_coding	protein_coding	protein_coding	protein_coding	3	101	2	1.85833	4.019645	6.18096	0.0378973	4.96998e-5	0.141283	0.00577648
chr14	102001781	102001866	5820627	0	+	0.541176	(0.515,0.57]	chr14	552082	1	SS5_PROX	SS5_PROX:INTRON	DYNC1H1	ENSG00000197102.14	ENST00000360184.10:ENST00000684561.1:ENST00000680313.1:ENST00000679720.1:ENST00000680715.1:ENST00000681283.1:ENST00000681822.1:ENST00000679910.1:ENST00000681574.1:ENST00000645039.2:ENST00000645149.2:ENST00000680200.1:ENST00000680120.1:ENST00000644881.2:ENST00000681066.1:ENST00000680423.1:ENST00000681536.1:ENST00000679486.1:ENST00000681010.1:ENST00000679629.1:ENST00000681123.1:ENST00000680874.1:ENST00000680137.1:ENST00000643508.2:ENST00000680808.1:ENST00000681311.1:ENST00000681859.1:ENST00000643684.1:ENST00000643958.2:ENST00000680001.1:ENST00000681668.1:ENST00000645114.2:ENST00000681751.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	43	2	2.65834	4.019550000000001	5.38076	0.0187418	3.24968e-4	0.117523	0.0165891
chr16	68194649	68194748	6371332	0	+	0.333333	(0.32,0.35]	chr16	612248	25	INTRON	INTRON	NFATC3	ENSG00000072736.19	ENST00000563319.5:ENST00000569766.5:ENST00000566301.5:ENST00000575270.5:ENST00000346183.8:ENST00000349223.9:ENST00000329524.8:ENST00000562926.5:ENST00000570212.5:ENST00000563796.5:ENST00000567152.5:ENST00000563288.5:ENST00000535127.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	49	2	2.90786	4.019545	5.13123	0.00993008	0.00394704	0.0877296	0.0548259
chr22	21582467	21582567	7481852	0	+	0.44	(0.408,0.44]	chr22	763232	137	INTRON	INTRON	UBE2L3	ENSG00000185651.16	ENST00000458578.6:ENST00000545681.2:ENST00000696046.1:ENST00000342192.9:ENST00000496722.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	72	2	2.42808	4.01938	5.61068	0.00331055	3.21002e-4	0.0527031	0.0165409
chr1	708738	708837	357039	0	-	0.40404	(0.378,0.408]	chr1	41103	46	INTRON	INTRON	ENSG00000230021	ENSG00000230021.10	ENST00000419394.2:ENST00000634337.2:ENST00000635509.2:ENST00000648019.1:ENST00000440200.5:ENST00000441245.5	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	0	22	2	3.82294	4.019285	4.21563	0.044228	0.0315429	0.162255	0.13151
chr1	12466148	12466248	30675	0	+	0.38	(0.378,0.408]	chr1	3785	5	INTRON	INTRON	VPS13D	ENSG00000048707.15	ENST00000620676.6:ENST00000613099.4:ENST00000011700.10:ENST00000646411.1:ENST00000543710.5:ENST00000645371.1:ENST00000543766.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	22	2	3.82294	4.019285	4.21563	0.044228	0.0315429	0.162255	0.13151
chr1	51490510	51490610	454070	0	-	0.4	(0.378,0.408]	chr1	54447	88	INTRON	INTRON	EPS15	ENSG00000085832.17	ENST00000371733.8:ENST00000371730.6:ENST00000371727.5:ENST00000471391.1:ENST00000465467.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	22	2	3.82294	4.019285	4.21563	0.044228	0.0315429	0.162255	0.13151
chr1	112578717	112578817	523169	0	-	0.4	(0.378,0.408]	chr1	61545	3	SS3_PROX	SS3_PROX:INTRON	ST7L	ENSG00000007341.19	ENST00000358039.9:ENST00000490715.5:ENST00000360743.8:ENST00000361846.7:ENST00000480988.5:ENST00000369669.5:ENST00000490067.5:ENST00000343210.11:ENST00000369666.5:ENST00000497457.5:ENST00000463235.5:ENST00000418497.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	22	2	3.82294	4.019285	4.21563	0.044228	0.0315429	0.162255	0.13151
chr1	153808490	153808589	556600	0	-	0.383838	(0.378,0.408]	chr1	65923	39	UTR3	UTR3:EXON_MRNA:INTRON	GATAD2B	ENSG00000143614.10	ENST00000637918.1:ENST00000368655.5	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.82294	4.019285	4.21563	0.044228	0.0315429	0.162255	0.13151
chr1	155666649	155666747	563087	0	-	0.438776	(0.408,0.44]	chr1	67145	49	INTRON	INTRON	YY1AP1	ENSG00000163374.20	ENST00000368339.9:ENST00000295566.8:ENST00000368330.6:ENST00000436865.5:ENST00000359205.9:ENST00000407221.5:ENST00000404643.5:ENST00000361140.8:ENST00000361831.9:ENST00000347088.9:ENST00000354691.9:ENST00000368340.9:ENST00000311573.9:ENST00000442834.6:ENST00000355499.9:ENST00000405763.7:ENST00000488784.5:ENST00000493625.5:ENST00000477470.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	100	2	1.83931	4.019285	6.19926	0.00806984	1.98542e-5	0.0806514	0.00360253
chr1	202482247	202482347	294119	0	+	0.38	(0.378,0.408]	chr1	33853	188	INTRON	INTRON	PPP1R12B	ENSG00000077157.22	ENST00000391959.5:ENST00000608999.6:ENST00000498070.5:ENST00000290419.9:ENST00000491336.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	22	2	3.82294	4.019285	4.21563	0.044228	0.0315429	0.162255	0.13151
chr10	22632051	22632150	4579672	0	-	0.383838	(0.378,0.408]	chr10	422018	220	INTRON	INTRON	PIP4K2A	ENSG00000150867.14	ENST00000376573.9:ENST00000545335.5	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.82294	4.019285	4.21563	0.044228	0.0315429	0.162255	0.13151
chr10	72446139	72446239	4645114	0	-	0.39	(0.378,0.408]	chr10	427385	224	INTRON	INTRON	MICU1	ENSG00000107745.20	ENST00000361114.10:ENST00000476605.7:ENST00000642044.1:ENST00000635239.1:ENST00000418483.6:ENST00000398763.8:ENST00000489666.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	22	2	3.82294	4.019285	4.21563	0.044228	0.0315429	0.162255	0.13151
chr10	107016276	107016376	4689793	0	-	0.4	(0.378,0.408]	chr10	432765	593	INTRON	INTRON	SORCS1	ENSG00000108018.16	ENST00000263054.11	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.82294	4.019285	4.21563	0.044228	0.0315429	0.162255	0.13151
chr11	96247195	96247295	5023408	0	-	0.38	(0.378,0.408]	chr11	473809	1533	INTRON	INTRON	MAML2	ENSG00000184384.14	ENST00000524717.6	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.82294	4.019285	4.21563	0.044228	0.0315429	0.162255	0.13151
chr12	112016119	112016219	5229381	0	+	0.4	(0.378,0.408]	chr12	495722	9	INTRON	INTRON	ERP29	ENSG00000089248.7	ENST00000455836.1:ENST00000261735.4:ENST00000552052.1	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.82294	4.019285	4.21563	0.044228	0.0315429	0.162255	0.13151
chr13	112806593	112806693	5547419	0	+	0.38	(0.378,0.408]	chr13	529942	3	SS5_PROX	SS5_PROX:INTRON	ATP11A	ENSG00000068650.19	ENST00000375645.8:ENST00000375630.6:ENST00000487903.5:ENST00000466946.5:ENST00000459908.5:ENST00000418678.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	22	2	3.82294	4.019285	4.21563	0.044228	0.0315429	0.162255	0.13151
chr14	102955371	102955463	5971008	0	-	0.380435	(0.378,0.408]	chr14	567469	3	INTRON	INTRON	CDC42BPB	ENSG00000198752.11	ENST00000361246.7:ENST00000559043.1:ENST00000634889.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	22	2	3.82294	4.019285	4.21563	0.044228	0.0315429	0.162255	0.13151
chr16	68147776	68147876	6370852	0	+	0.39	(0.378,0.408]	chr16	612207	91	INTRON	INTRON	NFATC3	ENSG00000072736.19	ENST00000563319.5:ENST00000569766.5:ENST00000553077.5:ENST00000566301.5:ENST00000549350.5:ENST00000566893.5:ENST00000575270.5:ENST00000561714.5:ENST00000346183.8:ENST00000568466.6:ENST00000539828.6:ENST00000562171.1:ENST00000349223.9:ENST00000329524.8:ENST00000379165.8:ENST00000562926.5:ENST00000570212.5:ENST00000563796.5:ENST00000567152.5:ENST00000563288.5:ENST00000535127.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	22	2	3.82294	4.019285	4.21563	0.044228	0.0315429	0.162255	0.13151
chr19	10149273	10149352	7134379	0	-	0.379747	(0.378,0.408]	chr19	719122	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DNMT1	ENSG00000130816.17	ENST00000586667.2:ENST00000340748.8:ENST00000359526.9:ENST00000592705.5:ENST00000679103.1:ENST00000677634.1:ENST00000676820.1:ENST00000677250.1:ENST00000677013.1:ENST00000677685.1:ENST00000677616.1:ENST00000676604.1:ENST00000678024.1:ENST00000676868.1:ENST00000677783.1:ENST00000678694.1:ENST00000679100.1:ENST00000678647.1:ENST00000676610.1:ENST00000678804.1:ENST00000679313.1:ENST00000677946.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	22	2	3.82294	4.019285	4.21563	0.044228	0.0315429	0.162255	0.13151
chr19	19480111	19480211	7036097	0	+	0.4	(0.378,0.408]	chr19	701470	70	INTRON	INTRON	GATAD2A	ENSG00000167491.18	ENST00000360315.7:ENST00000609040.5:ENST00000417582.6:ENST00000683918.1:ENST00000432704.5:ENST00000404158.5:ENST00000429242.7:ENST00000358713.7:ENST00000444839.1:ENST00000418032.3:ENST00000473184.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	22	2	3.82294	4.019285	4.21563	0.044228	0.0315429	0.162255	0.13151
chr19	36474057	36474157	7174161	0	-	0.38	(0.378,0.408]	chr19	725008	2	INTRON	INTRON	ZNF566	ENSG00000186017.16	ENST00000493391.6:ENST00000392170.7:ENST00000452939.7:ENST00000427002.2:ENST00000424129.7:ENST00000434377.6:ENST00000472909.6:ENST00000460937.5:ENST00000480361.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	22	2	3.82294	4.019285	4.21563	0.044228	0.0315429	0.162255	0.13151
chr19	46372115	46372215	7081566	0	+	0.4	(0.378,0.408]	chr19	708528	178	INTRON	INTRON	PPP5C	ENSG00000011485.15	ENST00000012443.9:ENST00000478046.5:ENST00000391919.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	22	2	3.82294	4.019285	4.21563	0.044228	0.0315429	0.162255	0.13151
chr2	87650427	87650527	827891	0	+	0.38	(0.378,0.408]	chr2	92501	138	INTRON	INTRON	ENSG00000284879	ENSG00000284879.1	ENST00000643276.1:ENST00000646855.1	lncRNA	lncRNA	lncRNA	lncRNA	0	22	2	3.82294	4.019285	4.21563	0.044228	0.0315429	0.162255	0.13151
chr2	176273812	176273911	925256	0	+	0.383838	(0.378,0.408]	chr2	101669	30	INTRON	INTRON	MTX2	ENSG00000128654.14	ENST00000420864.5:ENST00000249442.11:ENST00000423461.6:ENST00000443241.5:ENST00000452865.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	22	2	3.82294	4.019285	4.21563	0.044228	0.0315429	0.162255	0.13151
chr2	187536049	187536148	1289341	0	-	0.383838	(0.378,0.408]	chr2	135621	62	INTRON	INTRON	TFPI	ENSG00000003436.16	ENST00000233156.9:ENST00000409676.5:ENST00000339091.8:ENST00000421427.5:ENST00000437725.5:ENST00000453013.5:ENST00000417013.5:ENST00000420747.1	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.82294	4.019285	4.21563	0.044228	0.0315429	0.162255	0.13151
chr2	197920681	197920781	970263	0	+	0.39	(0.378,0.408]	chr2	104858	1100	INTRON	INTRON	PLCL1	ENSG00000115896.16	ENST00000428675.6:ENST00000435320.1:ENST00000487695.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	22	2	3.82294	4.019285	4.21563	0.044228	0.0315429	0.162255	0.13151
chr3	197049715	197049813	1900972	0	-	0.408163	(0.378,0.408]	chr3	190469	28	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	DLG1	ENSG00000075711.21	ENST00000667157.1:ENST00000346964.6:ENST00000656428.1:ENST00000663148.1:ENST00000655488.1:ENST00000357674.9:ENST00000671185.1:ENST00000658701.1:ENST00000667104.1:ENST00000661336.1:ENST00000669565.1:ENST00000670455.1:ENST00000656087.1:ENST00000670366.1:ENST00000653583.1:ENST00000653795.1:ENST00000671246.1:ENST00000661453.1:ENST00000665728.1:ENST00000664564.1:ENST00000653331.1:ENST00000660432.1:ENST00000660898.1:ENST00000657381.1:ENST00000659221.1:ENST00000654737.1:ENST00000469371.5:ENST00000669332.1:ENST00000659716.1:ENST00000660553.1:ENST00000664991.1:ENST00000419354.5:ENST00000661440.1:ENST00000667971.1:ENST00000670935.1:ENST00000668578.1:ENST00000666007.1:ENST00000661229.1:ENST00000660237.1:ENST00000657098.1:ENST00000661013.1:ENST00000436682.6:ENST00000452595.5:ENST00000662727.1:ENST00000422288.6:ENST00000448528.6:ENST00000443183.5:ENST00000656944.1:ENST00000392382.6:ENST00000450955.5:ENST00000658155.1:ENST00000669714.1:ENST00000654733.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	22	2	3.82294	4.019285	4.21563	0.044228	0.0315429	0.162255	0.13151
chr6	116703994	116704090	2945218	0	+	0.385417	(0.378,0.408]	chr6	277222	15	INTRON	INTRON	KPNA5	ENSG00000196911.11	ENST00000368564.7:ENST00000356348.6	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.82294	4.019285	4.21563	0.044228	0.0315429	0.162255	0.13151
chr8	18002080	18002179	3708562	0	+	0.393939	(0.378,0.408]	chr8	343990	81	INTRON	INTRON	PCM1	ENSG00000078674.19	ENST00000325083.13:ENST00000519253.5:ENST00000524226.5:ENST00000522275.5	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.82294	4.019285	4.21563	0.044228	0.0315429	0.162255	0.13151
chr8	47527724	47527823	3749905	0	+	0.383838	(0.378,0.408]	chr8	348837	868	INTRON	INTRON	SPIDR	ENSG00000164808.17	ENST00000541342.2:ENST00000518074.5:ENST00000297423.9:ENST00000521550.5:ENST00000524126.5:ENST00000524141.5:ENST00000519661.5:ENST00000522117.5:ENST00000524033.5:ENST00000524006.5:ENST00000521214.5:ENST00000519401.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	22	2	3.82294	4.019285	4.21563	0.044228	0.0315429	0.162255	0.13151
chr9	126885083	126885183	4199935	0	+	0.38	(0.378,0.408]	chr9	383348	43	UTR3	UTR3:EXON_MRNA	ZBTB34	ENSG00000177125.6	ENST00000319119.5:ENST00000695642.1	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.82294	4.019285	4.21563	0.044228	0.0315429	0.162255	0.13151
chr3	13418159	13418259	1618580	0	-	0.47	(0.44,0.476]	chr3	167237	179	INTRON	INTRON	NUP210	ENSG00000132182.13	ENST00000254508.7:ENST00000420141.3:ENST00000695492.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	79	2	2.44812	4.019005	5.58989	0.00368597	9.76499e-5	0.0535094	0.00830626
chr2	31978294	31978394	1090794	0	-	0.5	(0.476,0.515]	chr2	116913	151	INTRON	INTRON	MEMO1:DPY30	ENSG00000162959.14:ENSG00000162961.14	ENST00000295065.9:ENST00000446765.5:ENST00000404530.6:ENST00000490459.5:ENST00000426310.6:ENST00000413686.1:ENST00000407893.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	83	2	2.37295	4.019	5.66505	0.00193884	2.08835e-4	0.0409025	0.0131276
chr1	100441368	100441465	173521	0	+	0.443299	(0.44,0.476]	chr1	18836	10	INTRON	INTRON	CDC14A	ENSG00000079335.20	ENST00000646665.1:ENST00000644844.1:ENST00000635056.2:ENST00000647005.1:ENST00000647203.1:ENST00000644676.1:ENST00000361544.11:ENST00000370124.8:ENST00000336454.5:ENST00000644813.1:ENST00000455467.6:ENST00000646563.1:ENST00000469387.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	48	2	2.74063	4.01893	5.29723	0.0176095	3.83422e-4	0.105143	0.017699199999999998
chr19	45859601	45859701	7193829	0	-	0.35	(0.32,0.35]	chr19	728658	39	INTRON	INTRON	SYMPK	ENSG00000125755.19	ENST00000245934.12:ENST00000593504.5:ENST00000599460.5:ENST00000598896.5:ENST00000602061.5:ENST00000598059.5:ENST00000594293.5:ENST00000593959.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	79	2	2.2643	4.01875	5.7732	0.00712852	3.96807e-4	0.0756118	0.0185763
chr1	26238172	26238271	49524	0	+	0.444444	(0.44,0.476]	chr1	6192	35	INTRON	INTRON	CEP85	ENSG00000130695.16	ENST00000451429.8:ENST00000640292.2:ENST00000252992.8	protein_coding	protein_coding	protein_coding	protein_coding	1	48	2	2.97451	4.018695	5.06288	0.00853825	0.00102416	0.0780043	0.0294041
chr17	19189857	19189954	6740866	0	-	0.525773	(0.515,0.57]	chr17	661759	3	EXON_SMALL	EXON_SMALL	SNORD3C	ENSG00000264940.5	ENST00000580533.1	snoRNA	snoRNA	snoRNA	snoRNA	13	559	2	3.40201	4.018695	4.63538	1.02368e-6	5.8652e-12	5.79132e-4	1.55624e-7
chr19	61610	61705	7108433	0	-	0.442105	(0.44,0.476]	chr19	713615	8	EXON_LNCRNA	EXON_LNCRNA	WASH5P	ENSG00000282458.1	ENST00000632506.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	1	48	2	2.97451	4.018695	5.06288	0.00853825	0.00102416	0.0780043	0.0294041
chr1	28923068	28923168	59041	0	+	0.36	(0.35,0.378]	chr1	7621	79	INTRON	INTRON	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000647918.1:ENST00000646800.1:ENST00000644342.1:ENST00000646189.1:ENST00000482464.6:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000646260.1:ENST00000373798.5:ENST00000644600.1:ENST00000649674.1:ENST00000643173.1:ENST00000343067.9:ENST00000644780.1:ENST00000650265.1:ENST00000648181.1:ENST00000643604.1:ENST00000648891.1:ENST00000373797.2:ENST00000349460.9:ENST00000645184.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	63	2	2.54421	4.018395	5.49258	0.00630238	8.19894e-4	0.0722266	0.0264086
chr1	1658164	1658247	360610	0	-	0.421687	(0.408,0.44]	chr1	41965	3	INTRON	INTRON	CDK11B	ENSG00000248333.9	ENST00000341832.11:ENST00000407249.7:ENST00000340677.9:ENST00000611150.3:ENST00000615951.4:ENST00000626918.2:ENST00000629289.2:ENST00000629312.2:ENST00000341028.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	49	2	3.10641	4.018325	4.93024	0.00555646	0.00170369	0.0648867	0.0381936
chrX	74279704	74279803	7841478	0	-	0.353535	(0.35,0.378]	chrX	799734	17	EXON_LNCRNA	EXON_LNCRNA:INTRON	FTX	ENSG00000230590.12	ENST00000603672.5:ENST00000430772.6:ENST00000602776.6:ENST00000638681.1:ENST00000652319.1:ENST00000661133.1:ENST00000652071.1:ENST00000602812.6:ENST00000651703.1:ENST00000653018.1:ENST00000658448.1:ENST00000662240.1:ENST00000652527.1:ENST00000651451.1:ENST00000657611.1:ENST00000660481.1:ENST00000659574.1:ENST00000661084.1:ENST00000662494.1:ENST00000670936.1:ENST00000602420.6:ENST00000658203.1:ENST00000638985.1:ENST00000691187.1:ENST00000603037.2:ENST00000687056.1:ENST00000654870.2:ENST00000652540.1:ENST00000652331.2:ENST00000652013.1:ENST00000657070.1:ENST00000665069.1:ENST00000651936.1:ENST00000652496.1:ENST00000653874.2:ENST00000661335.1:ENST00000664123.1:ENST00000658439.1:ENST00000666535.1:ENST00000652970.1:ENST00000423992.3:ENST00000665313.2:ENST00000651140.1:ENST00000693483.1:ENST00000656041.1:ENST00000657327.1:ENST00000664343.1:ENST00000656977.1:ENST00000671343.1:ENST00000659407.1:ENST00000671067.1:ENST00000660829.1:ENST00000671385.1:ENST00000418855.6:ENST00000602576.5:ENST00000660224.1:ENST00000662864.1:ENST00000429124.6:ENST00000668224.1:ENST00000659390.1:ENST00000455395.6:ENST00000659012.1:ENST00000664803.1:ENST00000654373.1	lncRNA	lncRNA	lncRNA	lncRNA	3	84	2	1.87726	4.018145	6.15903	0.0297629	7.41293e-6	0.12908	0.00193636
chr1	229469981	229470079	652934	0	-	0.520408	(0.515,0.57]	chr1	77327	29	INTRON	INTRON	NUP133	ENSG00000069248.12	ENST00000261396.6	protein_coding	protein_coding	protein_coding	protein_coding	1	41	2	3.12663	4.017875	4.90912	0.00374498	0.0021669	0.0562234	0.0417866
chr3	131006622	131006721	1504081	0	+	0.40404	(0.378,0.408]	chr3	157362	36	INTRON	INTRON	ATP2C1	ENSG00000017260.20	ENST00000504381.5:ENST00000507488.6:ENST00000533801.6:ENST00000513801.5:ENST00000328560.12:ENST00000422190.6:ENST00000359644.7:ENST00000504612.5	protein_coding	protein_coding	protein_coding	protein_coding	1	46	2	3.22599	4.017835	4.80968	0.00679828	0.00288652	0.0711802	0.0494641
chr11	3011399	3011497	4892116	0	-	0.5	(0.476,0.515]	chr11	458413	20	INTRON	INTRON	CARS1	ENSG00000110619.18	ENST00000397111.9:ENST00000531387.5:ENST00000380525.9:ENST00000278224.13:ENST00000529772.5:ENST00000526890.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	60	2	2.72507	4.017825	5.31058	0.0029369	9.15544e-4	0.0496505	0.0278396
chr11	14889931	14890031	4919883	0	-	0.53	(0.515,0.57]	chr11	461068	1	SS5_PROX	SS5_PROX:INTRON	CYP2R1	ENSG00000186104.11	ENST00000334636.10:ENST00000534686.5:ENST00000530609.5:ENST00000532378.5:ENST00000526489.5:ENST00000526276.5:ENST00000529043.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	41	2	3.05839	4.017805	4.97722	0.00485936	0.00168681	0.0640618	0.0370386
chr16	47620027	47620127	6344907	0	+	0.29	(0.28,0.32]	chr16	608950	7	INTRON	INTRON	PHKB	ENSG00000102893.17	ENST00000566044.5:ENST00000299167.12:ENST00000696809.1:ENST00000323584.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	84	2	2.47671	4.01758	5.55845	0.00327955	0.00141854	0.0527031	0.0340865
chr21	33584408	33584489	7441682	0	-	0.246914	[0,0.28]	chr21	759565	4	SS5_PROX	SS5_PROX:INTRON	DONSON	ENSG00000159147.18	ENST00000303113.10:ENST00000453626.5:ENST00000303071.10:ENST00000457359.5:ENST00000417871.5:ENST00000442660.5:ENST00000444517.5:ENST00000437395.5:ENST00000432378.5:ENST00000440810.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	61	2	2.59548	4.01758	5.43968	0.0346067	0.00113119	0.136649	0.0308465
chr6	3066014	3066113	2788082	0	+	0.464646	(0.44,0.476]	chr6	263285	9	INTRON	INTRON	RIPK1	ENSG00000137275.16	ENST00000678809.1:ENST00000678874.1:ENST00000380409.3:ENST00000677799.1:ENST00000677261.1:ENST00000676758.1:ENST00000676995.1:ENST00000679118.1:ENST00000479389.1:ENST00000676591.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	72	2	2.26452	4.017564999999999	5.77061	0.00654074	1.44264e-4	0.0735539	0.0109794
chr17	32223402	32223491	6597666	0	+	0.449438	(0.44,0.476]	chr17	641857	1	INTRON	INTRON	RHOT1	ENSG00000126858.19	ENST00000333942.10:ENST00000358365.7:ENST00000583994.5:ENST00000545287.7:ENST00000354266.7:ENST00000581031.5:ENST00000578205.5:ENST00000394692.6:ENST00000580392.5:ENST00000584692.1:ENST00000652713.1:ENST00000584852.1:ENST00000582586.1:ENST00000646284.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	45	2	3.2029	4.01746	4.83202	0.00525002	0.00308681	0.0633615	0.0510391
chr5	37297881	37297978	2601998	0	-	0.391753	(0.378,0.408]	chr5	247346	31	INTRON	INTRON	NUP155	ENSG00000113569.16	ENST00000231498.8:ENST00000502533.5:ENST00000381843.6:ENST00000513532.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	46	2	2.85854	4.017405	5.17627	0.0107837	0.00208234	0.0920575	0.0411801
chr21	6326568	6326667	7364839	0	+	0.313131	(0.28,0.32]	chr21	751664	21	INTRON	INTRON	ENSG00000278903	ENSG00000278903.4	ENST00000688458.1:ENST00000689306.1:ENST00000692898.1:ENST00000624576.3:ENST00000623738.3:ENST00000692237.1:ENST00000692046.1:ENST00000689354.1:ENST00000624165.1	lncRNA	lncRNA	lncRNA	lncRNA	3	92	2	1.99988	4.0173950000000005	6.03491	0.0228757	4.10265e-5	0.118056	0.00519615
chr7	73097967	73098067	3330932	0	+	0.36	(0.35,0.378]	chr7	309716	4	SS5_PROX	SS5_PROX:INTRON	PMS2P6	ENSG00000174384.9	ENST00000333674.5	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	2	64	2	2.34278	4.017335	5.69189	0.0129593	3.71413e-4	0.0991015	0.0178698
chr11	73842112	73842208	4825717	0	+	0.489583	(0.476,0.515]	chr11	450329	1	UTR5	UTR5:EXON_MRNA:INTRON	MRPL48	ENSG00000175581.14	ENST00000508278.6:ENST00000310614.12:ENST00000540162.5:ENST00000544140.5:ENST00000544819.5:ENST00000497094.6:ENST00000411840.6:ENST00000398483.7:ENST00000535277.5:ENST00000542303.5:ENST00000537007.5:ENST00000543058.1:ENST00000543374.1:ENST00000314282.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	51	2	2.3223	4.017225	5.71215	0.0519312	5.54639e-5	0.159306	0.00609037
chr17	61915437	61915536	6809478	0	-	0.474747	(0.44,0.476]	chr17	672755	30	INTRON	INTRON	INTS2	ENSG00000108506.13	ENST00000251334.7:ENST00000617492.4:ENST00000444766.7:ENST00000646745.1:ENST00000647009.1:ENST00000646954.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	45	2	2.89047	4.017125	5.14378	0.00955699	0.00184943	0.0863913	0.0388609
chr7	73511950	73512050	3554997	0	-	0.46	(0.44,0.476]	chr7	330813	7	INTRON	INTRON	BAZ1B	ENSG00000009954.11	ENST00000339594.9:ENST00000404251.1	protein_coding	protein_coding	protein_coding	protein_coding	1	45	2	2.89047	4.017125	5.14378	0.00955699	0.00184943	0.0863913	0.0388609
chr9	40098158	40098258	4259034	0	-	0.45	(0.44,0.476]	chr9	391902	1072	INTRON	INTRON	ENSG00000284116	ENSG00000284116.1	ENST00000639363.1	lncRNA	lncRNA	lncRNA	lncRNA	1	45	2	2.89047	4.017125	5.14378	0.00955699	0.00184943	0.0863913	0.0388609
chr1	246092744	246092844	676559	0	-	0.3	(0.28,0.32]	chr1	79717	393	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000391836.3:ENST00000464398.1:ENST00000453676.5:ENST00000462422.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	56	2	2.73077	4.01665	5.30253	0.0220748	0.0010319	0.115395	0.0294094
chr6	36091790	36091890	2853707	0	+	0.29	(0.28,0.32]	chr6	269663	148	INTRON	INTRON	MAPK14	ENSG00000112062.11	ENST00000229795.7:ENST00000468133.5:ENST00000229794.9:ENST00000310795.8:ENST00000491957.5:ENST00000496250.5:ENST00000474429.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	56	2	2.73077	4.01665	5.30253	0.0220748	0.0010319	0.115395	0.0294094
chr17	51105870	51105970	6796868	0	-	0.32	(0.28,0.32]	chr17	671024	258	INTRON	INTRON	SPAG9	ENSG00000008294.22	ENST00000262013.12:ENST00000505279.5:ENST00000357122.8	protein_coding	protein_coding	protein_coding	protein_coding	2	70	2	2.77917	4.016525	5.25388	0.00385849	0.00285651	0.0542786	0.0494641
chr16	21903248	21903348	6462304	0	-	0.42	(0.408,0.44]	chr16	623563	4	SS5_PROX	SS5_PROX:INTRON	SMG1P4	ENSG00000185710.9	ENST00000523028.5:ENST00000381448.8	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	2	65	2	2.31565	4.0164100000000005	5.71717	0.0154718	5.09043e-5	0.100909	0.00585477
chr16	74324675	74324775	6523095	0	-	0.55	(0.515,0.57]	chr16	631552	114	INTRON	INTRON	ENSG00000259972	ENSG00000259972.3	ENST00000565313.1:ENST00000561921.1	lncRNA	lncRNA	lncRNA	lncRNA	1	43	2	2.96814	4.016365	5.06459	0.00756432	6.03964e-4	0.0749063	0.0223465
chr8	123085535	123085635	3850362	0	+	0.54	(0.515,0.57]	chr8	354677	8	INTRON	INTRON	TBC1D31	ENSG00000156787.17	ENST00000519418.5:ENST00000287380.6:ENST00000522420.5:ENST00000327098.9:ENST00000518099.5:ENST00000521676.5:ENST00000524307.5:ENST00000522276.1:ENST00000518684.1:ENST00000521980.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	43	2	2.96814	4.016365	5.06459	0.00756432	6.03964e-4	0.0749063	0.0223465
chr11	463439	463539	4719035	0	+	0.49	(0.476,0.515]	chr11	436010	25	INTRON	INTRON	PTDSS2	ENSG00000174915.12	ENST00000532614.5:ENST00000308020.6:ENST00000531520.5:ENST00000525727.5:ENST00000527479.5:ENST00000526878.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	51	2	3.41728	4.016235	4.61519	0.00528365	0.00165726	0.0656295	0.0369207
chr1	7231499	7231598	10116	0	+	0.494949	(0.476,0.515]	chr1	1177	1398	INTRON	INTRON	CAMTA1	ENSG00000171735.19	ENST00000303635.12	protein_coding	protein_coding	protein_coding	protein_coding	4	87	2	2.67243	4.01619	5.35995	7.54256e-4	4.26065e-4	0.0251179	0.0184573
chr1	21158970	21159070	393451	0	-	0.29	(0.28,0.32]	chr1	46836	460	INTRON	INTRON	EIF4G3	ENSG00000075151.24	ENST00000374935.7:ENST00000602326.6:ENST00000685872.1:ENST00000686579.1:ENST00000688741.1:ENST00000400422.6:ENST00000634879.2:ENST00000693470.1:ENST00000685814.1:ENST00000356916.7:ENST00000682284.1:ENST00000438975.5:ENST00000411888.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	70	2	2.28998	4.01616	5.7423400000000004	0.0166401	7.31742e-4	0.110511	0.0248722
chr2	197808195	197808293	969136	0	+	0.306122	(0.28,0.32]	chr2	104853	25	INTRON	INTRON	PLCL1	ENSG00000115896.16	ENST00000428675.6:ENST00000435320.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	56	2	2.67975	4.01582	5.35189	0.0252505	8.52844e-4	0.12011	0.0264928
chr1	13751485	13751584	31672	0	+	0.292929	(0.28,0.32]	chr1	3857	16	INTRON	INTRON	PRDM2	ENSG00000116731.23	ENST00000311066.10:ENST00000376048.9:ENST00000235372.11:ENST00000491134.5:ENST00000502727.5:ENST00000502724.5:ENST00000413440.5:ENST00000343137.8:ENST00000491815.1:ENST00000503842.5:ENST00000505823.5:ENST00000407521.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	57	2	2.45545	4.01581	5.57617	0.0438092	3.41866e-4	0.14901	0.0164909
chr7	66711266	66711366	3325180	0	+	0.29	(0.28,0.32]	chr7	309221	257	INTRON	INTRON	RABGEF1	ENSG00000154710.18	ENST00000607882.5	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	1	56	2	2.78004	4.015725	5.25141	0.0193244	0.00125199	0.108861	0.0328543
chr1	174430789	174430889	259838	0	+	0.28	[0,0.28]	chr1	30818	363	INTRON	INTRON	RABGAP1L	ENSG00000152061.24	ENST00000357444.10:ENST00000251507.8:ENST00000681986.1:ENST00000367690.5:ENST00000526253.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	62	2	2.9385	4.015655	5.09281	0.0142776	0.00372534	0.0963703	0.0561984
chr1	40345410	40345509	81156	0	+	0.363636	(0.35,0.378]	chr1	10536	1	INTRON	INTRON	SMAP2	ENSG00000084070.12	ENST00000435168.6	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.94291	4.015535	4.08816	0.046021	0.0374229	0.155878	0.149888
chr1	67424099	67424199	477566	0	-	0.36	(0.35,0.378]	chr1	57479	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	SERBP1	ENSG00000142864.15	ENST00000370994.8:ENST00000361219.11:ENST00000370995.6:ENST00000370990.5:ENST00000493607.1:ENST00000484880.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	22	2	3.94291	4.015535	4.08816	0.046021	0.0374229	0.155878	0.149888
chr1	100478157	100478257	173894	0	+	0.37	(0.35,0.378]	chr1	18861	97	INTRON	INTRON	CDC14A	ENSG00000079335.20	ENST00000646665.1:ENST00000644844.1:ENST00000635056.2:ENST00000647005.1:ENST00000647203.1:ENST00000644676.1:ENST00000361544.11:ENST00000370124.8:ENST00000336454.5:ENST00000644813.1:ENST00000646563.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	22	2	3.94291	4.015535	4.08816	0.046021	0.0374229	0.155878	0.149888
chr1	179983074	179983173	267720	0	+	0.353535	(0.35,0.378]	chr1	31299	137	INTRON	INTRON	CEP350	ENSG00000135837.16	ENST00000491495.2:ENST00000367607.8	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.94291	4.015535	4.08816	0.046021	0.0374229	0.155878	0.149888
chr1	220268539	220268635	640795	0	-	0.364583	(0.35,0.378]	chr1	75590	4	INTRON	INTRON	RAB3GAP2	ENSG00000118873.17	ENST00000358951.7:ENST00000687065.1:ENST00000686381.1:ENST00000687647.1:ENST00000692972.1:ENST00000690315.1:ENST00000691862.1:ENST00000691661.1:ENST00000690373.1:ENST00000693602.1:ENST00000692813.1:ENST00000685286.1:ENST00000688035.1:ENST00000685664.1:ENST00000690824.1:ENST00000687394.1:ENST00000690379.1:ENST00000478976.1:ENST00000237724.9:ENST00000689820.1:ENST00000474178.1:ENST00000692208.1:ENST00000688281.1:ENST00000684982.1:ENST00000475769.1:ENST00000462353.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	22	2	3.94291	4.015535	4.08816	0.046021	0.0374229	0.155878	0.149888
chr10	119869737	119869836	4706463	0	-	0.363636	(0.35,0.378]	chr10	434340	95	INTRON	INTRON	MCMBP	ENSG00000197771.13	ENST00000360003.7:ENST00000369077.4:ENST00000466047.5:ENST00000569515.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	22	2	3.94291	4.015535	4.08816	0.046021	0.0374229	0.155878	0.149888
chr10	124467475	124467575	4533384	0	+	0.37	(0.35,0.378]	chr10	418451	51	INTRON	INTRON	LHPP	ENSG00000107902.14	ENST00000368842.10:ENST00000392757.8:ENST00000368839.1	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.94291	4.015535	4.08816	0.046021	0.0374229	0.155878	0.149888
chr11	32904513	32904612	4764828	0	+	0.363636	(0.35,0.378]	chr11	440609	108	INTRON	INTRON	QSER1	ENSG00000060749.16	ENST00000650167.2:ENST00000399302.7:ENST00000527250.5	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.94291	4.015535	4.08816	0.046021	0.0374229	0.155878	0.149888
chr11	47735718	47735817	4951088	0	-	0.353535	(0.35,0.378]	chr11	464406	12	INTRON	INTRON	FNBP4	ENSG00000109920.13	ENST00000263773.10:ENST00000528388.5:ENST00000534003.5:ENST00000527894.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	22	2	3.94291	4.015535	4.08816	0.046021	0.0374229	0.155878	0.149888
chr11	73067627	73067727	4982145	0	-	0.37	(0.35,0.378]	chr11	470743	514	INTRON	INTRON	FCHSD2	ENSG00000137478.15	ENST00000409418.9:ENST00000311172.11:ENST00000409314.5:ENST00000458644.6:ENST00000409853.5:ENST00000422375.1	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.94291	4.015535	4.08816	0.046021	0.0374229	0.155878	0.149888
chr12	131935814	131935913	5250071	0	+	0.353535	(0.35,0.378]	chr12	499261	10	INTRON	INTRON	PUS1	ENSG00000177192.14	ENST00000443358.6:ENST00000322060.9:ENST00000376649.8:ENST00000542167.2:ENST00000538037.5:ENST00000535067.5:ENST00000537484.1	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.94291	4.015535	4.08816	0.046021	0.0374229	0.155878	0.149888
chr13	20017551	20017650	5453023	0	+	0.363636	(0.35,0.378]	chr13	522472	106	INTRON	INTRON	ZMYM2	ENSG00000121741.17	ENST00000382881.7:ENST00000382874.6:ENST00000610343.5:ENST00000382871.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	22	2	3.94291	4.015535	4.08816	0.046021	0.0374229	0.155878	0.149888
chr13	52333661	52333743	5598929	0	-	0.365854	(0.35,0.378]	chr13	535288	1	SS5_PROX	SS5_PROX:INTRON	TPTE2P2	ENSG00000272281.6	ENST00000605936.6:ENST00000606711.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	22	2	3.94291	4.015535	4.08816	0.046021	0.0374229	0.155878	0.149888
chr13	99223754	99223853	5524665	0	+	0.363636	(0.35,0.378]	chr13	528219	179	INTRON	INTRON	UBAC2	ENSG00000134882.16	ENST00000355700.9:ENST00000403766.8:ENST00000468067.5:ENST00000473091.5:ENST00000376440.6:ENST00000457666.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	22	2	3.94291	4.015535	4.08816	0.046021	0.0374229	0.155878	0.149888
chr14	31146433	31146532	5858385	0	-	0.353535	(0.35,0.378]	chr14	556655	11	INTRON	INTRON	HECTD1	ENSG00000092148.14	ENST00000399332.6:ENST00000553700.5:ENST00000693685.1:ENST00000692835.1:ENST00000554882.6:ENST00000611816.5:ENST00000688933.1:ENST00000691390.1:ENST00000553957.6:ENST00000687002.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	22	2	3.94291	4.015535	4.08816	0.046021	0.0374229	0.155878	0.149888
chr15	79876999	79877098	6240699	0	-	0.353535	(0.35,0.378]	chr15	595750	12	EXON_MRNA	EXON_MRNA:INTRON	MTHFS:ST20-MTHFS:ENSG00000279394	ENSG00000136371.11:ENSG00000259332.3:ENSG00000279394.1	ENST00000258874.4:ENST00000559722.2:ENST00000615374.5:ENST00000479961.1:ENST00000494999.1:ENST00000624650.1	protein_coding	protein_coding	protein_coding:TEC	protein_coding:TEC	0	22	2	3.94291	4.015535	4.08816	0.046021	0.0374229	0.155878	0.149888
chr15	84993840	84993940	6089050	0	+	0.36	(0.35,0.378]	chr15	579504	111	INTRON	INTRON	PDE8A	ENSG00000073417.15	ENST00000310298.8:ENST00000557957.5:ENST00000394553.6:ENST00000339708.9:ENST00000478717.5:ENST00000485596.5:ENST00000559742.5:ENST00000559086.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	22	2	3.94291	4.015535	4.08816	0.046021	0.0374229	0.155878	0.149888
chr17	82167149	82167248	6851975	0	-	0.363636	(0.35,0.378]	chr17	678995	34	INTRON	INTRON	CCDC57	ENSG00000176155.21	ENST00000694881.1:ENST00000389641.9:ENST00000694882.1:ENST00000665763.1:ENST00000578910.2:ENST00000419322.6:ENST00000327026.7:ENST00000392343.3:ENST00000577530.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	22	2	3.94291	4.015535	4.08816	0.046021	0.0374229	0.155878	0.149888
chr18	42003756	42003855	6897947	0	+	0.353535	(0.35,0.378]	chr18	683418	67	INTRON	INTRON	PIK3C3	ENSG00000078142.14	ENST00000262039.9:ENST00000398870.7	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.94291	4.015535	4.08816	0.046021	0.0374229	0.155878	0.149888
chr3	38243377	38243477	1399344	0	+	0.37	(0.35,0.378]	chr3	146735	2	INTRON	INTRON	OXSR1	ENSG00000172939.9	ENST00000446845.5:ENST00000311806.8:ENST00000467900.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	22	2	3.94291	4.015535	4.08816	0.046021	0.0374229	0.155878	0.149888
chr3	129884425	129884524	1818014	0	-	0.353535	(0.35,0.378]	chr3	182656	35	INTRON	INTRON	TMCC1	ENSG00000172765.18	ENST00000393238.8:ENST00000426664.6:ENST00000648771.1:ENST00000505616.5:ENST00000505924.5:ENST00000512902.5:ENST00000508869.5:ENST00000515024.5:ENST00000508729.5:ENST00000509440.5:ENST00000510521.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	22	2	3.94291	4.015535	4.08816	0.046021	0.0374229	0.155878	0.149888
chr6	157035819	157035918	3009753	0	+	0.363636	(0.35,0.378]	chr6	281137	51	INTRON	INTRON	ARID1B	ENSG00000049618.24	ENST00000346085.10:ENST00000636930.2:ENST00000647938.1:ENST00000350026.10:ENST00000674298.1:ENST00000674190.1:ENST00000414678.7:ENST00000319584.11:ENST00000452544.2:ENST00000637887.1:ENST00000635849.1:ENST00000637003.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	22	2	3.94291	4.015535	4.08816	0.046021	0.0374229	0.155878	0.149888
chr7	107519836	107519936	3612584	0	-	0.37	(0.35,0.378]	chr7	336698	390	INTRON	INTRON	COG5	ENSG00000164597.15	ENST00000297135.9:ENST00000347053.8:ENST00000393603.7:ENST00000475638.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	22	2	3.94291	4.015535	4.08816	0.046021	0.0374229	0.155878	0.149888
chr7	124836112	124836211	3632809	0	-	0.373737	(0.35,0.378]	chr7	337624	3	INTRON	INTRON	POT1	ENSG00000128513.16	ENST00000430927.6:ENST00000357628.8:ENST00000393329.5:ENST00000653274.1:ENST00000661898.1:ENST00000664330.1:ENST00000657892.1:ENST00000662531.1:ENST00000653241.1:ENST00000653892.1:ENST00000664366.1:ENST00000655761.1:ENST00000668382.1:ENST00000654766.1:ENST00000657333.1:ENST00000653819.1:ENST00000609106.5:ENST00000607932.5:ENST00000608057.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	22	2	3.94291	4.015535	4.08816	0.046021	0.0374229	0.155878	0.149888
chr3	15790533	15790632	1623747	0	-	0.282828	(0.28,0.32]	chr3	168013	85	INTRON	INTRON	ANKRD28	ENSG00000206560.12	ENST00000399451.6:ENST00000624145.3:ENST00000683139.1:ENST00000412318.5:ENST00000497037.5:ENST00000451422.1:ENST00000498524.5:ENST00000439830.5:ENST00000461696.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	57	2	3.00395	4.015305	5.02666	0.0101329	0.0027935	0.0850389	0.0488769
chrX	2405848	2405948	7744663	0	-	0.35	(0.32,0.35]	chrX	792953	130	INTRON	INTRON	DHRSX	ENSG00000169084.15	ENST00000334651.11:ENST00000412516.7:ENST00000444280.6:ENST00000441131.7:ENST00000478825.7:ENST00000430536.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	49	2	3.13277	4.015225	4.89768	0.00793135	0.00458313	0.076155	0.0622676
chr17	2638820	2638915	6547893	0	+	0.326316	(0.32,0.35]	chr17	635236	1	INTRON	INTRON	PAFAH1B1	ENSG00000007168.14	ENST00000576586.5:ENST00000397195.10:ENST00000676201.1:ENST00000575477.5:ENST00000675621.1:ENST00000676353.1:ENST00000674717.1:ENST00000675202.1:ENST00000675764.1:ENST00000674608.1:ENST00000676077.1:ENST00000676098.1:ENST00000572915.6:ENST00000570400.1:ENST00000675430.1:ENST00000675331.1:ENST00000676188.1:ENST00000574816.5:ENST00000675390.1:ENST00000676456.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	53	2	2.79707	4.01517	5.23327	0.0170923	9.33826e-4	0.104099	0.0278746
chr19	3414760	3414860	7000109	0	+	0.33	(0.32,0.35]	chr19	694177	32	INTRON	INTRON	NFIC	ENSG00000141905.19	ENST00000641145.1:ENST00000589123.5:ENST00000395111.7:ENST00000586919.5:ENST00000341919.7:ENST00000443272.3:ENST00000590282.5:ENST00000588839.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	53	2	2.79707	4.01517	5.23327	0.0170923	9.33826e-4	0.104099	0.0278746
chr9	131415119	131415219	4217180	0	+	0.48	(0.476,0.515]	chr9	386720	205	INTRON	INTRON	PRRC2B	ENSG00000288701.1	ENST00000682525.1:ENST00000684596.1:ENST00000683519.1:ENST00000682501.1	protein_coding	protein_coding	protein_coding	protein_coding	1	45	2	2.87879	4.01511	5.15143	0.00999149	0.00166579	0.0879541	0.0369207
chr10	69133347	69133447	4444642	0	+	0.37	(0.35,0.378]	chr10	410022	3	SS5_PROX	SS5_PROX:INTRON	VPS26A	ENSG00000122958.15	ENST00000373382.5:ENST00000395098.5:ENST00000489656.5:ENST00000263559.11:ENST00000497564.5:ENST00000490696.5:ENST00000467852.1:ENST00000489794.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	69	2	3.2393	4.015045000000001	4.79079	0.00846427	2.86552e-4	0.0776969	0.0150568
chr12	62474075	62474175	5151233	0	+	0.36	(0.35,0.378]	chr12	487458	29	INTRON	INTRON	MON2	ENSG00000061987.16	ENST00000641654.1:ENST00000546600.5:ENST00000393630.8:ENST00000549378.5:ENST00000547095.5:ENST00000552738.5:ENST00000393629.6:ENST00000552115.5:ENST00000549286.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	78	2	2.71933	4.014955	5.31058	0.00160599	9.31518e-4	0.0364977	0.0278746
chr17	27309866	27309960	6580700	0	+	0.361702	(0.35,0.378]	chr17	639635	2	SS3_PROX	SS3_PROX:INTRON	WSB1	ENSG00000109046.15	ENST00000467843.6:ENST00000262394.7:ENST00000348811.6:ENST00000583096.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	78	2	2.71933	4.014955	5.31058	0.00160599	9.31518e-4	0.0364977	0.0278746
chr2	39485614	39485713	751944	0	+	0.434343	(0.408,0.44]	chr2	85865	104	INTRON	INTRON	MAP4K3-DT	ENSG00000231312.8	ENST00000659562.1:ENST00000426083.5:ENST00000667600.1:ENST00000443038.1:ENST00000451547.2:ENST00000671403.1:ENST00000658319.1:ENST00000658048.1:ENST00000422128.6:ENST00000670934.1:ENST00000449569.6:ENST00000425775.2:ENST00000662313.1:ENST00000658057.1:ENST00000668952.1:ENST00000446698.5	lncRNA	lncRNA	lncRNA	lncRNA	1	45	2	3.20437	4.014835	4.8253	0.0056738	0.00306596	0.0653997	0.0509893
chr22	43973623	43973723	7527816	0	+	0.52	(0.515,0.57]	chr22	769659	3	SS5_PROX	SS5_PROX:INTRON	SAMM50	ENSG00000100347.15	ENST00000350028.5	protein_coding	protein_coding	protein_coding	protein_coding	1	41	2	3.19178	4.01471	4.83764	0.00289534	0.00279527	0.0494641	0.0469265
chr8	103718616	103718716	3824536	0	+	0.49	(0.476,0.515]	chr8	353764	19	INTRON	INTRON	RIMS2	ENSG00000176406.24	ENST00000696799.1:ENST00000666250.1:ENST00000668113.1:ENST00000504942.6:ENST00000632716.1:ENST00000696800.1:ENST00000696801.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	64	2	2.31726	4.014705	5.71215	0.015077	5.54639e-5	0.0994339	0.00609037
chr5	71534798	71534896	2384392	0	+	0.530612	(0.515,0.57]	chr5	229998	20	INTRON	INTRON	BDP1	ENSG00000145734.20	ENST00000358731.9:ENST00000508917.6:ENST00000514903.7:ENST00000525844.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	41	2	2.98677	4.01451	5.04225	0.00632549	0.00131841	0.0722266	0.0331539
chr14	23066660	23066736	5842683	0	-	0.434211	(0.408,0.44]	chr14	555597	3	INTRON	INTRON	ACIN1	ENSG00000100813.15	ENST00000605057.6:ENST00000557515.5:ENST00000262710.5:ENST00000457657.5:ENST00000357481.6:ENST00000338631.10:ENST00000473758.5:ENST00000397341.7:ENST00000555053.5:ENST00000555566.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	45	2	2.89193	4.014475	5.13702	0.00950364	0.00202889	0.0863579	0.04086
chr17	38881166	38881265	6606517	0	+	0.414141	(0.408,0.44]	chr17	643195	26	INTRON	INTRON	LASP1	ENSG00000002834.18	ENST00000433206.6:ENST00000585841.5:ENST00000318008.11:ENST00000443937.7:ENST00000584106.1:ENST00000435347.7:ENST00000419929.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	45	2	2.89193	4.014475	5.13702	0.00950364	0.00202889	0.0863579	0.04086
chr5	160100755	160100855	2759613	0	-	0.27	[0,0.28]	chr5	260436	63	INTRON	INTRON	PWWP2A	ENSG00000170234.13	ENST00000456329.7:ENST00000523662.1:ENST00000307063.9:ENST00000520662.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	83	2	2.17149	4.014455	5.85742	0.0308079	2.14364e-4	0.13151	0.0128514
chr6	161059434	161059533	3025172	0	+	0.333333	(0.32,0.35]	chr6	282325	91	INTRON	INTRON	MAP3K4	ENSG00000085511.20	ENST00000366919.6:ENST00000392142.9:ENST00000542952.5:ENST00000366920.6:ENST00000348824.11:ENST00000544041.5:ENST00000490904.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	91	2	1.9182	4.01435	6.1105	0.0141462	9.43645e-5	0.103512	0.00865219
chr11	701127	701207	4720026	0	+	0.575	(0.57,1]	chr11	436269	1	SS5_PROX	SS5_PROX:INTRON	EPS8L2:TMEM80	ENSG00000177106.17:ENSG00000177042.16	ENST00000524763.5:ENST00000608174.6:ENST00000397512.8:ENST00000526170.6:ENST00000492023.1:ENST00000397510.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	30	2	3.22856	4.014335	4.80011	0.00205928	6.07135e-4	0.0420839	0.0226059
chr16	23419227	23419327	6463742	0	-	0.48	(0.476,0.515]	chr16	623764	4	SS3_PROX	SS3_PROX:INTRON	COG7	ENSG00000168434.13	ENST00000307149.10	protein_coding	protein_coding	protein_coding	protein_coding	4	83	2	2.4029	4.01406	5.62522	0.0016811	2.4907e-4	0.0381232	0.0145812
chr1	153890401	153890500	557440	0	-	0.484848	(0.476,0.515]	chr1	65989	35	INTRON	INTRON	GATAD2B	ENSG00000143614.10	ENST00000368655.5:ENST00000634544.1:ENST00000634408.1:ENST00000634401.1:ENST00000634791.1:ENST00000636014.1:ENST00000637331.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	60	2	2.76855	4.014	5.25945	0.00244302	0.00111445	0.0456956	0.0306328
chr11	62627653	62627753	4960157	0	-	0.51	(0.476,0.515]	chr11	466535	3	SS3_PROX	SS3_PROX:INTRON	GANAB	ENSG00000089597.18	ENST00000346178.8:ENST00000532402.5:ENST00000356638.8:ENST00000540933.5:ENST00000648273.1:ENST00000534779.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	60	2	2.76855	4.014	5.25945	0.00244302	0.00111445	0.0456956	0.0306328
chr7	119620377	119620477	3627540	0	-	0.43	(0.408,0.44]	chr7	337315	1199	INTRON	INTRON	LINC02476	ENSG00000225546.6	ENST00000660268.1	lncRNA	lncRNA	lncRNA	lncRNA	3	79	2	2.39349	4.0137149999999995	5.63394	0.00467273	7.78928e-5	0.0600108	0.00735438
chr1	21748671	21748771	396514	0	-	0.55	(0.515,0.57]	chr1	47315	4	SS3_PROX	SS3_PROX:INTRON	USP48	ENSG00000090686.16	ENST00000400301.5:ENST00000308271.14:ENST00000529637.5:ENST00000421625.6	protein_coding	protein_coding	protein_coding	protein_coding	10	293	2	3.57746	4.013705	4.44995	1.255e-7	2.14502e-8	1.69761e-4	5.37417e-5
chr3	167692565	167692664	1853617	0	-	0.434343	(0.408,0.44]	chr3	186284	45	INTRON	INTRON	PDCD10	ENSG00000114209.15	ENST00000392750.7:ENST00000473645.6:ENST00000497056.6:ENST00000492396.5:ENST00000461494.5:ENST00000470131.5:ENST00000475915.6:ENST00000487947.6:ENST00000471885.5:ENST00000479121.5:ENST00000462725.6:ENST00000492139.5	protein_coding	protein_coding	protein_coding	protein_coding	2	99	2	3.75882	4.01349	4.26816	4.04678e-4	1.58618e-5	0.0185763	0.00300937
chr9	131183577	131183676	4216225	0	+	0.30303	(0.28,0.32]	chr9	386630	48	INTRON	INTRON	NUP214	ENSG00000126883.19	ENST00000695497.1:ENST00000695498.1:ENST00000695496.1:ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000525980.5:ENST00000526346.5:ENST00000531929.5:ENST00000651334.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	95	2	2.12129	4.013355000000001	5.90542	0.00696605	3.92169e-4	0.0754576	0.0184748
chr7	881086	881184	3269154	0	+	0.520408	(0.515,0.57]	chr7	303674	24	INTRON	INTRON	SUN1:GET4	ENSG00000164828.18:ENSG00000239857.7	ENST00000457861.1:ENST00000265857.8:ENST00000412734.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	44	2	2.60899	4.01327	5.41755	0.0232669	1.1703e-4	0.118148	0.00929802
chr12	53624353	53624452	5328998	0	-	0.333333	(0.32,0.35]	chr12	508405	230	INTRON	INTRON	ATF7	ENSG00000170653.19	ENST00000548446.6:ENST00000420353.7:ENST00000456903.8:ENST00000588232.5:ENST00000551480.2:ENST00000588078.5:ENST00000591397.1:ENST00000548118.6:ENST00000589726.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	53	2	2.84812	4.01317	5.17822	0.0147575	0.00115625	0.0983813	0.0313436
chr19	4421965	4422065	7001957	0	+	0.44	(0.408,0.44]	chr19	694529	35	INTRON	INTRON	CHAF1A	ENSG00000167670.16	ENST00000301280.10:ENST00000587739.1:ENST00000585371.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	48	2	2.84077	4.013065	5.18536	0.0132196	6.17381e-4	0.0940535	0.0223951
chr5	12590110	12590210	2318735	0	+	0.41	(0.408,0.44]	chr5	224776	147	INTRON	INTRON	LINC01194	ENSG00000248131.6	ENST00000513051.6:ENST00000664069.1:ENST00000505196.1:ENST00000505877.5	lncRNA	lncRNA	lncRNA	lncRNA	1	48	2	2.84077	4.013065	5.18536	0.0132196	6.17381e-4	0.0940535	0.0223951
chr5	28860233	28860333	2330352	0	+	0.29	(0.28,0.32]	chr5	225135	497	INTRON	INTRON	LINC02109	ENSG00000259786.7	ENST00000658190.1	lncRNA	lncRNA	lncRNA	lncRNA	1	56	2	2.82769	4.013055	5.19842	0.0169391	0.00152333	0.103888	0.0360297
chr1	235277342	235277442	663354	0	-	0.52	(0.515,0.57]	chr1	78552	162	INTRON	INTRON	ARID4B	ENSG00000054267.22	ENST00000349213.7:ENST00000366603.6:ENST00000264183.9:ENST00000421364.5:ENST00000491632.5:ENST00000418304.1:ENST00000466653.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	42	2	3.42644	4.01279	4.59914	0.00616166	0.00106731	0.0676501	0.0300133
chr17	51071516	51071616	6796523	0	-	0.21	[0,0.28]	chr17	671018	147	INTRON	INTRON	SPAG9	ENSG00000008294.22	ENST00000262013.12:ENST00000505279.5:ENST00000357122.8:ENST00000514613.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	56	2	3.13926	4.012755	4.88625	0.0173315	0.00563224	0.104099	0.0678837
chr2	58216560	58216658	1126502	0	-	0.22449	[0,0.28]	chr2	120938	25	INTRON	INTRON	FANCL	ENSG00000115392.13	ENST00000696400.1:ENST00000403295.8:ENST00000696492.1:ENST00000427708.7:ENST00000696314.1:ENST00000696315.1:ENST00000696454.1:ENST00000696508.1:ENST00000696548.1:ENST00000696542.1:ENST00000696319.1:ENST00000403676.6:ENST00000696433.1:ENST00000696434.1:ENST00000696499.1:ENST00000696564.1:ENST00000402135.8:ENST00000696546.1:ENST00000233741.9:ENST00000696316.1:ENST00000696378.1:ENST00000696435.1:ENST00000696493.1:ENST00000696543.1:ENST00000696544.1:ENST00000696545.1:ENST00000696565.1:ENST00000696620.1:ENST00000696621.1:ENST00000696635.1:ENST00000696364.1:ENST00000696634.1:ENST00000696317.1:ENST00000696622.1:ENST00000696467.1:ENST00000696547.1:ENST00000449070.6:ENST00000696305.1:ENST00000417361.2:ENST00000696338.1:ENST00000696361.1:ENST00000696318.1:ENST00000696371.1:ENST00000696409.1:ENST00000696410.1:ENST00000696455.1:ENST00000696468.1:ENST00000696527.1:ENST00000696567.1:ENST00000696324.1:ENST00000696566.1:ENST00000696623.1:ENST00000446381.6:ENST00000696469.1:ENST00000696624.1:ENST00000696411.1:ENST00000470506.2:ENST00000696358.1:ENST00000696373.1:ENST00000696394.1:ENST00000696320.1:ENST00000696395.1:ENST00000696341.1:ENST00000696340.1:ENST00000696374.1:ENST00000696396.1:ENST00000696342.1:ENST00000696325.1:ENST00000696399.1:ENST00000696398.1:ENST00000696306.1:ENST00000696397.1:ENST00000696360.1:ENST00000696344.1:ENST00000696343.1:ENST00000696362.1:ENST00000696528.1:ENST00000696326.1:ENST00000696625.1:ENST00000696510.1:ENST00000696438.1:ENST00000696496.1:ENST00000696509.1:ENST00000696569.1:ENST00000696457.1:ENST00000696458.1:ENST00000696473.1:ENST00000696495.1:ENST00000696415.1:ENST00000696472.1:ENST00000696459.1:ENST00000696416.1:ENST00000696530.1:ENST00000696460.1:ENST00000696570.1:ENST00000696531.1:ENST00000696307.1:ENST00000696345.1:ENST00000696377.1:ENST00000696417.1:ENST00000696594.1:ENST00000696595.1:ENST00000696379.1:ENST00000696346.1:ENST00000696380.1:ENST00000696347.1:ENST00000696461.1:ENST00000696596.1:ENST00000696549.1:ENST00000696597.1:ENST00000696550.1:ENST00000696598.1:ENST00000696321.1:ENST00000696476.1:ENST00000696477.1:ENST00000696511.1:ENST00000481670.3:ENST00000696403.1:ENST00000696551.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	56	2	3.13926	4.012755	4.88625	0.0173315	0.00563224	0.104099	0.0678837
chr3	150423297	150423374	1533578	0	+	0.272727	[0,0.28]	chr3	159809	2	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	TSC22D2	ENSG00000196428.13	ENST00000361875.8:ENST00000688009.1:ENST00000480589.1:ENST00000466814.1:ENST00000485421.1:ENST00000492828.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	56	2	3.13926	4.012755	4.88625	0.0173315	0.00563224	0.104099	0.0678837
chr10	35519406	35519505	4426342	0	+	0.444444	(0.44,0.476]	chr10	407937	24	INTRON	INTRON	CCNY	ENSG00000108100.18	ENST00000374706.5:ENST00000493157.6:ENST00000374704.8:ENST00000265375.13:ENST00000339497.7:ENST00000492478.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	48	2	3.02751	4.012665	4.99782	0.00715968	0.0013223	0.0723634	0.0333932
chr15	81854145	81854245	6243845	0	-	0.46	(0.44,0.476]	chr15	595867	354	INTRON	INTRON	ENSG00000259692	ENSG00000259692.6	ENST00000559428.2:ENST00000560054.6:ENST00000560097.1:ENST00000559299.2	lncRNA	lncRNA	lncRNA	lncRNA	1	48	2	3.02751	4.012665	4.99782	0.00715968	0.0013223	0.0723634	0.0333932
chr17	37158580	37158680	6760499	0	-	0.46	(0.44,0.476]	chr17	664696	24	INTRON	INTRON	ACACA	ENSG00000278540.5	ENST00000616317.5:ENST00000614428.4:ENST00000612895.4:ENST00000619546.4:ENST00000617649.4:ENST00000614482.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	48	2	3.02751	4.012665	4.99782	0.00715968	0.0013223	0.0723634	0.0333932
chr10	908906	909006	4542359	0	-	0.53	(0.515,0.57]	chr10	419304	55	INTRON	INTRON	LARP4B	ENSG00000107929.16	ENST00000316157.8:ENST00000690516.1:ENST00000476529.5:ENST00000406525.6:ENST00000481118.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	44	2	3.25547	4.0126550000000005	4.76984	0.00261721	0.00198034	0.0455413	0.0411469
chr5	181256307	181256406	2563430	0	+	0.333333	(0.32,0.35]	chr5	245313	7	EXON_MRNA	EXON_MRNA:INTRON	CTC-338M12.4	ENSG00000233937.8	ENST00000506340.3:ENST00000505151.6:ENST00000511331.5:ENST00000417281.2:ENST00000599439.2	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	2	67	2	2.25173	4.012465	5.7732	0.0180122	3.96807e-4	0.114436	0.0185763
chr2	135538514	135538614	874023	0	+	0.24	[0,0.28]	chr2	97879	65	INTRON	INTRON	R3HDM1	ENSG00000048991.17	ENST00000483021.5:ENST00000463230.5:ENST00000683871.1:ENST00000409478.5:ENST00000264160.8:ENST00000438014.5:ENST00000488035.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	56	2	2.63238	4.0123	5.39222	0.0259691	0.00453865	0.133676	0.0595107
chr19	52839172	52839269	7208305	0	-	0.505155	(0.476,0.515]	chr19	731593	13	UTR3	UTR3:EXON_MRNA:INTRON	ZNF28:ZNF468	ENSG00000198538.11:ENSG00000204604.13	ENST00000596559.5:ENST00000594602.5:ENST00000595646.6:ENST00000243639.8	protein_coding	protein_coding	protein_coding	protein_coding	1	49	2	3.24596	4.0122599999999995	4.77856	0.00322919	0.00305743	0.0509893	0.0507087
chr1	92541054	92541154	505707	0	-	0.31	(0.28,0.32]	chr1	59775	267	INTRON	INTRON	EVI5	ENSG00000067208.16	ENST00000370331.5:ENST00000540033.2:ENST00000684568.2	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	3.88145	4.011795	4.14214	0.0579756	0.0561985	0.18407	0.167723
chr1	207330310	207330409	303355	0	+	0.313131	(0.28,0.32]	chr1	34907	29	INTRON	INTRON	CD55	ENSG00000196352.18	ENST00000695822.1:ENST00000695823.1:ENST00000695826.1:ENST00000695825.1:ENST00000695824.1:ENST00000367063.6:ENST00000695827.1:ENST00000695828.1:ENST00000645323.1:ENST00000391921.9:ENST00000695829.1:ENST00000367064.9:ENST00000314754.12:ENST00000644836.1:ENST00000343420.6:ENST00000476590.1:ENST00000465534.5:ENST00000488171.6:ENST00000618707.2:ENST00000635614.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	23	2	3.88145	4.011795	4.14214	0.0579756	0.0561985	0.18407	0.167723
chr1	231031428	231031528	655340	0	-	0.29	(0.28,0.32]	chr1	77736	28	INTRON	INTRON	FAM89A	ENSG00000182118.8	ENST00000366654.5	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	3.88145	4.011795	4.14214	0.0579756	0.0561985	0.18407	0.167723
chr10	18650628	18650728	4570707	0	-	0.32	(0.28,0.32]	chr10	421532	1	SS5_PROX	SS5_PROX:INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7:ENST00000606425.2	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	3.88145	4.011795	4.14214	0.0579756	0.0561985	0.18407	0.167723
chr10	34634586	34634686	4598485	0	-	0.31	(0.28,0.32]	chr10	423718	1171	INTRON	INTRON	PARD3	ENSG00000148498.17	ENST00000545260.5:ENST00000545693.5:ENST00000346874.9:ENST00000350537.9:ENST00000374788.8:ENST00000374789.8:ENST00000374790.8:ENST00000374794.8:ENST00000696673.1:ENST00000374776.6:ENST00000340077.9:ENST00000374773.6	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	3.88145	4.011795	4.14214	0.0579756	0.0561985	0.18407	0.167723
chr10	35453360	35453460	4425675	0	+	0.3	(0.28,0.32]	chr10	407912	188	INTRON	INTRON	CCNY	ENSG00000108100.18	ENST00000374706.5:ENST00000490012.6:ENST00000493157.6:ENST00000374704.8:ENST00000265375.13:ENST00000339497.7:ENST00000492478.5:ENST00000470025.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	23	2	3.88145	4.011795	4.14214	0.0579756	0.0561985	0.18407	0.167723
chr11	65288479	65288549	4804995	0	+	0.285714	(0.28,0.32]	chr11	446392	3	INTRON	INTRON	POLA2	ENSG00000014138.9	ENST00000527850.5:ENST00000265465.8:ENST00000527618.5:ENST00000525924.1:ENST00000533192.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	23	2	3.88145	4.011795	4.14214	0.0579756	0.0561985	0.18407	0.167723
chr14	67909952	67910052	5766275	0	+	0.3	(0.28,0.32]	chr14	547062	7	INTRON	INTRON	RAD51B	ENSG00000182185.19	ENST00000487861.5:ENST00000471583.6:ENST00000479335.5:ENST00000487270.5:ENST00000488612.5:ENST00000553595.5:ENST00000497460.5:ENST00000492236.5:ENST00000554244.5:ENST00000478014.5:ENST00000469165.6:ENST00000460526.5:ENST00000468382.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	23	2	3.88145	4.011795	4.14214	0.0579756	0.0561985	0.18407	0.167723
chr14	89990936	89991032	5804230	0	+	0.291667	(0.28,0.32]	chr14	549997	8	INTRON	INTRON	TDP1	ENSG00000042088.14	ENST00000554976.5:ENST00000393452.7:ENST00000335725.9:ENST00000393454.6:ENST00000545686.6:ENST00000555178.5:ENST00000555880.5:ENST00000556063.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	23	2	3.88145	4.011795	4.14214	0.0579756	0.0561985	0.18407	0.167723
chr16	89539478	89539576	6420671	0	+	0.316327	(0.28,0.32]	chr16	616262	19	EXON_MRNA	EXON_MRNA:INTRON	SPG7	ENSG00000197912.16	ENST00000647079.1:ENST00000646303.1:ENST00000643649.1:ENST00000644498.1:ENST00000645897.1:ENST00000643668.1:ENST00000644225.1:ENST00000645818.2:ENST00000645977.1:ENST00000645063.1:ENST00000646263.1:ENST00000643724.1:ENST00000644781.1:ENST00000644901.1:ENST00000645042.1:ENST00000646531.1:ENST00000646930.1:ENST00000642436.1:ENST00000644210.1:ENST00000646589.1:ENST00000268704.7:ENST00000646826.1:ENST00000646716.1:ENST00000643345.1:ENST00000646958.1:ENST00000643105.1:ENST00000645354.1:ENST00000642334.1:ENST00000647227.1:ENST00000646445.1:ENST00000643954.1:ENST00000646399.1:ENST00000644671.1:ENST00000644748.1:ENST00000643496.1:ENST00000647032.1:ENST00000644751.1:ENST00000642427.1:ENST00000643370.1:ENST00000645886.1:ENST00000646454.1:ENST00000561945.2:ENST00000644171.1:ENST00000566682.2:ENST00000645258.1:ENST00000644044.1:ENST00000642263.1:ENST00000644556.1:ENST00000645842.1:ENST00000643734.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	23	2	3.88145	4.011795	4.14214	0.0579756	0.0561985	0.18407	0.167723
chr17	77204158	77204246	6679280	0	+	0.295455	(0.28,0.32]	chr17	652405	1	INTRON	INTRON	SEC14L1	ENSG00000129657.16	ENST00000392476.6:ENST00000589827.5:ENST00000430767.8:ENST00000585618.5:ENST00000436233.9:ENST00000443798.8:ENST00000591437.5:ENST00000431431.6	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	3.88145	4.011795	4.14214	0.0579756	0.0561985	0.18407	0.167723
chr2	33037001	33037101	736361	0	+	0.29	(0.28,0.32]	chr2	84882	154	INTRON	INTRON	LTBP1	ENSG00000049323.16	ENST00000404816.7	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	3.88145	4.011795	4.14214	0.0579756	0.0561985	0.18407	0.167723
chr2	38322513	38322613	1098794	0	-	0.3	(0.28,0.32]	chr2	117856	31	INTRON	INTRON	ATL2	ENSG00000119787.14	ENST00000378954.9:ENST00000406122.5:ENST00000405384.6:ENST00000402054.5:ENST00000419554.6:ENST00000651368.1:ENST00000452935.6:ENST00000449130.5:ENST00000443098.5:ENST00000456736.5:ENST00000474535.2:ENST00000472097.1:ENST00000451483.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	23	2	3.88145	4.011795	4.14214	0.0579756	0.0561985	0.18407	0.167723
chr2	177312221	177312320	1276332	0	-	0.292929	(0.28,0.32]	chr2	134738	5	INTRON	INTRON	NFE2L2:ENSG00000213963	ENSG00000116044.16:ENSG00000213963.6	ENST00000464747.5:ENST00000586532.5:ENST00000397057.6:ENST00000456746.5:ENST00000430416.5:ENST00000627798.2:ENST00000625449.2:ENST00000443132.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	0	23	2	3.88145	4.011795	4.14214	0.0579756	0.0561985	0.18407	0.167723
chr2	191978025	191978125	962320	0	+	0.29	(0.28,0.32]	chr2	104337	546	INTRON	INTRON	CAVIN2-AS1	ENSG00000233766.8	ENST00000424116.7:ENST00000428980.6	lncRNA	lncRNA	lncRNA	lncRNA	0	23	2	3.88145	4.011795	4.14214	0.0579756	0.0561985	0.18407	0.167723
chr21	37515316	37515415	7407732	0	+	0.282828	(0.28,0.32]	chr21	754961	29	UTR3	UTR3:EXON_MRNA	DYRK1A	ENSG00000157540.22	ENST00000647188.2:ENST00000338785.8:ENST00000646548.1	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	3.88145	4.011795	4.14214	0.0579756	0.0561985	0.18407	0.167723
chr3	15783152	15783252	1623673	0	-	0.29	(0.28,0.32]	chr3	168013	11	INTRON	INTRON	ANKRD28	ENSG00000206560.12	ENST00000399451.6:ENST00000624145.3:ENST00000683139.1:ENST00000412318.5:ENST00000497037.5:ENST00000451422.1:ENST00000498524.5:ENST00000439830.5:ENST00000461696.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	23	2	3.88145	4.011795	4.14214	0.0579756	0.0561985	0.18407	0.167723
chr3	15838791	15838890	1624235	0	-	0.30303	(0.28,0.32]	chr3	168034	241	INTRON	INTRON	ANKRD28	ENSG00000206560.12	ENST00000399451.6:ENST00000412318.5:ENST00000439830.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	23	2	3.88145	4.011795	4.14214	0.0579756	0.0561985	0.18407	0.167723
chr3	47741008	47741108	1684666	0	-	0.29	(0.28,0.32]	chr3	172107	25	INTRON	INTRON	SMARCC1	ENSG00000173473.11	ENST00000254480.10:ENST00000425518.5:ENST00000485833.1:ENST00000454240.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	23	2	3.88145	4.011795	4.14214	0.0579756	0.0561985	0.18407	0.167723
chr3	58114503	58114602	1438500	0	+	0.292929	(0.28,0.32]	chr3	151924	18	INTRON	INTRON	FLNB	ENSG00000136068.16	ENST00000358537.7:ENST00000429972.6:ENST00000490882.5:ENST00000295956.9:ENST00000684506.1:ENST00000684607.1:ENST00000682871.1:ENST00000682868.1:ENST00000684107.1:ENST00000493452.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	23	2	3.88145	4.011795	4.14214	0.0579756	0.0561985	0.18407	0.167723
chr4	145052881	145052981	2254302	0	-	0.29	(0.28,0.32]	chr4	220098	192	INTRON	INTRON	ANAPC10	ENSG00000164162.14	ENST00000641499.1:ENST00000506851.5:ENST00000613466.4:ENST00000507656.6:ENST00000502651.5:ENST00000309439.9:ENST00000451299.6:ENST00000510270.5:ENST00000511466.5:ENST00000514390.5:ENST00000513054.5:ENST00000502562.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	23	2	3.88145	4.011795	4.14214	0.0579756	0.0561985	0.18407	0.167723
chr5	145776390	145776490	2746049	0	-	0.32	(0.28,0.32]	chr5	258689	110	INTRON	INTRON	PRELID2	ENSG00000186314.12	ENST00000510594.1:ENST00000683046.1:ENST00000334744.8:ENST00000394450.6:ENST00000505416.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	23	2	3.88145	4.011795	4.14214	0.0579756	0.0561985	0.18407	0.167723
chr6	7140447	7140547	2798691	0	+	0.32	(0.28,0.32]	chr6	263728	4	SS3_PROX	SS3_PROX:INTRON	RREB1	ENSG00000124782.21	ENST00000379933.7:ENST00000491191.5:ENST00000471433.5:ENST00000379938.7:ENST00000467782.5:ENST00000349384.10:ENST00000334984.10:ENST00000475946.5:ENST00000483150.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	23	2	3.88145	4.011795	4.14214	0.0579756	0.0561985	0.18407	0.167723
chr6	111459599	111459699	3192124	0	-	0.32	(0.28,0.32]	chr6	297346	428	INTRON	INTRON	REV3L	ENSG00000009413.16	ENST00000422377.5:ENST00000434009.5:ENST00000368802.8:ENST00000435970.5:ENST00000358835.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	23	2	3.88145	4.011795	4.14214	0.0579756	0.0561985	0.18407	0.167723
chr7	87841332	87841432	3566010	0	-	0.3	(0.28,0.32]	chr7	332275	3	SS5_PROX	SS5_PROX:INTRON	SLC25A40	ENSG00000075303.13	ENST00000341119.10:ENST00000446236.5:ENST00000496348.5:ENST00000429674.5:ENST00000470328.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	23	2	3.88145	4.011795	4.14214	0.0579756	0.0561985	0.18407	0.167723
chr7	92691716	92691816	3571808	0	-	0.3	(0.28,0.32]	chr7	332796	198	INTRON	INTRON	CDK6	ENSG00000105810.10	ENST00000424848.3:ENST00000265734.8:ENST00000473078.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	23	2	3.88145	4.011795	4.14214	0.0579756	0.0561985	0.18407	0.167723
chr8	67192405	67192499	3777977	0	+	0.287234	(0.28,0.32]	chr8	350481	3	EXON_MRNA	EXON_MRNA:SS3_PROX:SS5_PROX:INTRON	CSPP1	ENSG00000104218.16	ENST00000676113.1:ENST00000675306.2:ENST00000262210.11:ENST00000678017.1:ENST00000675869.1:ENST00000678542.1:ENST00000677619.1:ENST00000676605.1:ENST00000676471.1:ENST00000677256.1:ENST00000676847.1:ENST00000677009.1:ENST00000676317.1:ENST00000677592.1:ENST00000676573.1:ENST00000678318.1:ENST00000677473.1:ENST00000674993.1:ENST00000679226.1:ENST00000676882.1:ENST00000675955.1:ENST00000677430.1:ENST00000678616.1:ENST00000679112.1:ENST00000678645.1:ENST00000677845.1:ENST00000676858.1:ENST00000678747.1:ENST00000519668.1:ENST00000677855.1:ENST00000677052.1:ENST00000679274.1:ENST00000678635.1:ENST00000676804.1:ENST00000679295.1:ENST00000677964.1:ENST00000676968.1:ENST00000678895.1:ENST00000678723.1:ENST00000677131.1:ENST00000521324.3:ENST00000675990.1:ENST00000521168.5:ENST00000677697.1:ENST00000677538.1:ENST00000676980.1:ENST00000678834.1:ENST00000679322.1:ENST00000677938.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	23	2	3.88145	4.011795	4.14214	0.0579756	0.0561985	0.18407	0.167723
chrX	113973370	113973469	7867773	0	-	0.282828	(0.28,0.32]	chrX	801547	94	INTRON	INTRON	XACT	ENSG00000241743.4	ENST00000468762.3:ENST00000674361.1:ENST00000649506.1	lncRNA	lncRNA	lncRNA	lncRNA	0	23	2	3.88145	4.011795	4.14214	0.0579756	0.0561985	0.18407	0.167723
chrX	129815494	129815594	7885935	0	-	0.29	(0.28,0.32]	chrX	802973	3	INTRON	INTRON	ZDHHC9	ENSG00000188706.13	ENST00000357166.11:ENST00000371064.7:ENST00000433917.5:ENST00000406492.2	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	3.88145	4.011795	4.14214	0.0579756	0.0561985	0.18407	0.167723
chrX	153351638	153351737	7737678	0	+	0.30303	(0.28,0.32]	chrX	791792	38	UTR3	UTR3:EXON_MRNA	ZNF275	ENSG00000063587.15	ENST00000370249.3:ENST00000650114.2:ENST00000370251.3	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	3.88145	4.011795	4.14214	0.0579756	0.0561985	0.18407	0.167723
chr10	48430092	48430192	4432237	0	+	0.53	(0.515,0.57]	chr10	408627	3	EXON_MRNA	EXON_MRNA:INTRON	MAPK8	ENSG00000107643.17	ENST00000395611.7:ENST00000374189.6:ENST00000374179.8:ENST00000360332.7:ENST00000374182.7:ENST00000374176.8:ENST00000469879.6:ENST00000469110.1:ENST00000459755.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	115	2	4.00925	4.011755	4.01426	7.7342e-5	1.58196e-6	0.00784644	7.57532e-4
chr2	152676879	152676950	1246104	0	-	0.309859	(0.28,0.32]	chr2	132316	1	SS3_PROX	SS3_PROX:INTRON	PRPF40A	ENSG00000196504.20	ENST00000410080.8:ENST00000545856.8:ENST00000696382.1:ENST00000696381.1:ENST00000354363.11:ENST00000493468.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	52	2	3.22074	4.011645	4.80255	0.0137406	0.00362783	0.0949306	0.055479
chr17	48944278	48944376	6791775	0	-	0.479592	(0.476,0.515]	chr17	670121	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SNF8	ENSG00000159210.10	ENST00000502492.6:ENST00000510558.6:ENST00000509995.5:ENST00000290330.7:ENST00000573795.5:ENST00000576353.5:ENST00000514929.1:ENST00000507302.6:ENST00000512243.5:ENST00000510195.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	47	2	2.56868	4.01129	5.4539	0.0256676	5.16081e-4	0.133676	0.0208667
chr1	40770828	40770920	83175	0	+	0.619565	(0.57,1]	chr1	10806	1	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	NFYC	ENSG00000066136.21	ENST00000427410.6:ENST00000447388.8:ENST00000425457.6:ENST00000456393.6:ENST00000372654.5:ENST00000372653.5:ENST00000372652.5:ENST00000372651.5:ENST00000440226.7:ENST00000308733.9:ENST00000414185.1:ENST00000488635.1:ENST00000496608.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	30	2	3.13254	4.01126	4.88998	0.00310655	4.016e-4	0.0512344	0.0185763
chr12	132583872	132583966	5251759	0	+	0.62766	(0.57,1]	chr12	499538	2	UTR3	UTR3:EXON_MRNA	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	3.13254	4.01126	4.88998	0.00310655	4.016e-4	0.0512344	0.0185763
chr4	126532419	126532519	2236033	0	-	0.36	(0.35,0.378]	chr4	219023	669	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	1	47	2	3.16371	4.011205	4.8587	0.00695662	0.00383956	0.0718189	0.0562562
chr5	104227784	104227884	2442693	0	+	0.32	(0.28,0.32]	chr5	234410	1225	INTRON	INTRON	LINC02163	ENSG00000251026.2	ENST00000662211.1:ENST00000666145.1	lncRNA	lncRNA	lncRNA	lncRNA	1	52	2	2.67453	4.011089999999999	5.34765	0.021289	0.00287138	0.123318	0.0474836
chr10	80469784	80469884	4476387	0	+	0.58	(0.57,1]	chr10	412074	7	INTRON	INTRON	TSPAN14	ENSG00000108219.15	ENST00000429989.7:ENST00000481124.5:ENST00000372158.6:ENST00000372157.6:ENST00000469149.1:ENST00000372164.7:ENST00000341863.10:ENST00000372156.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	31	2	3.34751	4.01097	4.67443	0.00122677	8.07515e-4	0.0320791	0.0258804
chr11	61808482	61808579	4957442	0	-	0.546392	(0.515,0.57]	chr11	465975	14	INTRON	INTRON	FADS1	ENSG00000149485.19	ENST00000350997.12:ENST00000433932.5:ENST00000542506.5:ENST00000496123.6:ENST00000539999.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	60	2	2.9572600000000002	4.010925	5.06459	0.00108918	6.03964e-4	0.0303873	0.0223465
chr10	24678079	24678179	4581488	0	-	0.36	(0.35,0.378]	chr10	422193	73	INTRON	INTRON	ARHGAP21	ENSG00000107863.20	ENST00000612832.4:ENST00000396432.7:ENST00000680286.1:ENST00000376410.7:ENST00000446003.5:ENST00000476499.1:ENST00000416305.1:ENST00000472150.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	47	2	2.86451	4.010870000000001	5.15723	0.0109111	0.00272706	0.0923273	0.0467523
chr15	41828766	41828845	6008609	0	+	0.35443	(0.35,0.378]	chr15	571918	2	SS3_PROX	SS3_PROX:SS5_PROX:INTRON	JMJD7	ENSG00000243789.11	ENST00000397299.9:ENST00000408047.5:ENST00000431823.1:ENST00000405106.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	47	2	2.86451	4.010870000000001	5.15723	0.0109111	0.00272706	0.0923273	0.0467523
chr19	57865017	57865117	7106188	0	+	0.24	[0,0.28]	chr19	713245	50	UTR3	UTR3:EXON_MRNA	ZNF587	ENSG00000198466.12	ENST00000339656.8	protein_coding	protein_coding	protein_coding	protein_coding	1	57	2	3.2621000000000002	4.010870000000001	4.75964	0.0232081	0.00367113	0.118148	0.056059199999999997
chr20	3914131	3914231	7227152	0	+	0.36	(0.35,0.378]	chr20	734510	11	INTRON	INTRON	PANK2	ENSG00000125779.24	ENST00000497424.5:ENST00000316562.9:ENST00000495692.5:ENST00000610179.7:ENST00000643504.2:ENST00000336066.8:ENST00000646394.1:ENST00000621507.1:ENST00000464452.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	47	2	2.86451	4.010870000000001	5.15723	0.0109111	0.00272706	0.0923273	0.0467523
chr12	76831582	76831682	5174542	0	+	0.56	(0.515,0.57]	chr12	490143	27	INTRON	INTRON	ZDHHC17	ENSG00000186908.15	ENST00000426126.7	protein_coding	protein_coding	protein_coding	protein_coding	4	75	2	2.45261	4.01084	5.56907	0.00116897	1.36543e-4	0.0315666	0.0106702
chr8	92874020	92874120	3990846	0	-	0.22	[0,0.28]	chr8	365358	876	INTRON	INTRON	FLJ46284	ENSG00000248858.7	ENST00000504861.2	lncRNA	lncRNA	lncRNA	lncRNA	2	83	2	2.09899	4.010445	5.9219	0.0371453	1.62133e-4	0.139304	0.0109774
chr7	127709930	127710029	3402986	0	+	0.292929	(0.28,0.32]	chr7	318124	19	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8	protein_coding	protein_coding	protein_coding	protein_coding	4	95	2	2.17818	4.01028	5.84238	0.00555379	5.0114e-4	0.0675078	0.0206993
chr1	246048756	246048856	676118	0	-	0.24	[0,0.28]	chr1	79713	603	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000391836.3:ENST00000464398.1:ENST00000453676.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	61	2	2.81922	4.009965	5.20071	0.0197411	0.00261806	0.109608	0.0470772
chr15	90904594	90904672	6102139	0	+	0.512821	(0.476,0.515]	chr15	581084	3	SS5_PROX	SS5_PROX:INTRON	MAN2A2	ENSG00000196547.15	ENST00000558290.5:ENST00000558853.5:ENST00000559999.5:ENST00000560451.5:ENST00000558161.5:ENST00000559717.6:ENST00000559965.5:ENST00000560192.5:ENST00000360468.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	131	2	3.58809	4.00992	4.43175	5.83402e-5	5.97988e-6	0.00668534	0.00171524
chr17	16040910	16040994	6733429	0	-	0.428571	(0.408,0.44]	chr17	660499	4	SS3_PROX	SS3_PROX:INTRON	NCOR1	ENSG00000141027.22	ENST00000268712.8:ENST00000395851.5:ENST00000470782.5:ENST00000464381.5:ENST00000395849.6:ENST00000579573.2:ENST00000580554.1:ENST00000579606.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	73	2	2.67392	4.0097000000000005	5.34548	0.00106946	9.40657e-4	0.0300133	0.0280776
chr6	161095707	161095804	3025554	0	+	0.329897	(0.32,0.35]	chr6	282401	15	INTRON	INTRON	MAP3K4	ENSG00000085511.20	ENST00000366919.6:ENST00000392142.9:ENST00000366920.6:ENST00000348824.11:ENST00000544041.5:ENST00000490904.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	113	2	3.8032	4.009585	4.21597	4.69031e-4	3.16804e-5	0.0200452	0.00449886
chr1	21741199	21741298	396437	0	-	0.292929	(0.28,0.32]	chr1	47304	42	INTRON	INTRON	USP48	ENSG00000090686.16	ENST00000400301.5:ENST00000308271.14:ENST00000529637.5:ENST00000421625.6:ENST00000374730.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	51	2	2.97333	4.0095600000000005	5.04579	0.00857834	0.00714672	0.083729	0.0723634
chr1	176039385	176039485	590019	0	-	0.29	(0.28,0.32]	chr1	70892	113	INTRON	INTRON	COP1	ENSG00000143207.21	ENST00000367669.8:ENST00000367667.5:ENST00000461830.6:ENST00000367666.5:ENST00000649803.1:ENST00000308769.12	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	51	2	2.97333	4.0095600000000005	5.04579	0.00857834	0.00714672	0.083729	0.0723634
chr5	111503647	111503743	2702712	0	-	0.28125	(0.28,0.32]	chr5	254405	12	INTRON	INTRON	STARD4	ENSG00000164211.13	ENST00000296632.8:ENST00000512160.5:ENST00000511137.5:ENST00000502931.5:ENST00000505803.5:ENST00000502322.5:ENST00000509887.5:ENST00000511569.5:ENST00000511436.5:ENST00000510346.5:ENST00000455172.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	51	2	2.97333	4.0095600000000005	5.04579	0.00857834	0.00714672	0.083729	0.0723634
chr7	101835665	101835765	3366545	0	+	0.32	(0.28,0.32]	chr7	315215	163	INTRON	INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000497815.5:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000607092.1:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000558469.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	51	2	2.97333	4.0095600000000005	5.04579	0.00857834	0.00714672	0.083729	0.0723634
chr15	27202562	27202662	5984469	0	+	0.29	(0.28,0.32]	chr15	569164	1754	INTRON	INTRON	GABRG3	ENSG00000182256.13	ENST00000615808.5:ENST00000555083.5	protein_coding	protein_coding	protein_coding	protein_coding	1	51	2	2.91832	4.009505	5.10069	0.0102484	0.00610574	0.089002	0.0676501
chr6	2951353	2951452	3047513	0	-	0.30303	(0.28,0.32]	chr6	283555	19	INTRON	INTRON	SERPINB6	ENSG00000124570.21	ENST00000643098.1:ENST00000380546.7:ENST00000380539.7:ENST00000380529.5:ENST00000380524.5:ENST00000643314.1:ENST00000646722.1:ENST00000649845.1:ENST00000644178.1:ENST00000612421.3:ENST00000647157.1:ENST00000644697.1:ENST00000616722.4:ENST00000642543.1:ENST00000644388.1:ENST00000380520.6:ENST00000645580.1:ENST00000644693.1:ENST00000644828.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	51	2	2.91832	4.009505	5.10069	0.0102484	0.00610574	0.089002	0.0676501
chr7	67013069	67013169	3326805	0	+	0.32	(0.28,0.32]	chr7	309405	30	INTRON	INTRON	TYW1	ENSG00000198874.14	ENST00000442959.5:ENST00000359626.10:ENST00000361660.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	51	2	2.91832	4.009505	5.10069	0.0102484	0.00610574	0.089002	0.0676501
chr18	9476286	9476386	6871140	0	+	0.38	(0.378,0.408]	chr18	680702	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	RALBP1	ENSG00000017797.13	ENST00000019317.8:ENST00000585015.6:ENST00000383432.8:ENST00000609094.2:ENST00000458039.3:ENST00000577221.1	protein_coding	protein_coding	protein_coding	protein_coding	3	73	2	2.46509	4.009485	5.55388	0.00287152	5.01023e-4	0.0494641	0.0206993
chr2	238433012	238433112	1052624	0	+	0.45	(0.44,0.476]	chr2	111976	3	SS3_PROX	SS3_PROX:INTRON	ASB1	ENSG00000065802.12	ENST00000463352.5:ENST00000469885.1:ENST00000264607.9:ENST00000409297.1:ENST00000438264.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	45	2	3.25801	4.009345	4.76068	0.00653414	0.00248185	0.0699952	0.0460771
chr5	112866003	112866099	2453047	0	+	0.458333	(0.44,0.476]	chr5	235038	9	INTRON	INTRON	SRP19	ENSG00000153037.15	ENST00000503445.5:ENST00000505459.6:ENST00000506997.2:ENST00000391338.3:ENST00000282999.7:ENST00000515463.1:ENST00000621420.5:ENST00000506987.1:ENST00000509024.2:ENST00000504696.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	45	2	3.25801	4.009345	4.76068	0.00653414	0.00248185	0.0699952	0.0460771
chr7	129457523	129457618	3411794	0	+	0.4	(0.378,0.408]	chr7	318934	5	INTRON	INTRON	STRIP2	ENSG00000128578.10	ENST00000249344.7:ENST00000435494.2	protein_coding	protein_coding	protein_coding	protein_coding	3	73	2	2.2708	4.009335	5.74787	0.00646593	2.21531e-4	0.073179	0.0136064
chr11	67120733	67120833	4812459	0	+	0.35	(0.32,0.35]	chr11	448094	1	SS3_PROX	SS3_PROX:INTRON	KDM2A	ENSG00000173120.15	ENST00000529006.7:ENST00000398645.6:ENST00000532436.5:ENST00000527157.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	53	2	2.89743	4.0092099999999995	5.12099	0.0127608	0.00143632	0.0926667	0.0347139
chrX	44879086	44879186	7648661	0	+	0.32	(0.28,0.32]	chrX	782726	47	INTRON	INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000675440.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000621147.5:ENST00000475233.1:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	74	2	3.0891	4.009195	4.92929	0.0098607	7.51507e-4	0.0838128	0.0251578
chr3	100716823	100716921	1468009	0	+	0.316327	(0.28,0.32]	chr3	153849	26	INTRON	INTRON	TFG	ENSG00000114354.15	ENST00000675047.1:ENST00000490574.6:ENST00000675543.1:ENST00000676308.1:ENST00000675499.1:ENST00000674699.1:ENST00000418917.7:ENST00000675553.1:ENST00000620299.5:ENST00000675246.1:ENST00000675692.1:ENST00000676276.1:ENST00000676054.1:ENST00000675890.1:ENST00000675011.1:ENST00000675586.1:ENST00000674645.1:ENST00000675958.1:ENST00000674798.1:ENST00000676010.1:ENST00000675591.1:ENST00000479672.6:ENST00000675420.1:ENST00000674615.1:ENST00000676431.1:ENST00000674758.1:ENST00000240851.9:ENST00000675243.1:ENST00000676111.1:ENST00000476228.5:ENST00000463568.6:ENST00000676395.1:ENST00000487505.6:ENST00000615993.2:ENST00000676455.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	70	2	2.81334	4.00897	5.2046	0.00448664	0.00248627	0.0593175	0.0461207
chr9	130077119	130077198	4211189	0	+	0.582278	(0.57,1]	chr9	386005	3	SS3_PROX	SS3_PROX:INTRON	GPR107	ENSG00000148358.20	ENST00000372406.5:ENST00000372410.7:ENST00000347136.11:ENST00000493417.5:ENST00000610997.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	53	2	2.50164	4.008929999999999	5.51622	8.10609e-4	1.33983e-5	0.0259609	0.00288846
chr2	230728551	230728651	1030316	0	+	0.45	(0.44,0.476]	chr2	110002	141	INTRON	INTRON	CAB39	ENSG00000135932.12	ENST00000258418.10:ENST00000409788.7:ENST00000410084.7	protein_coding	protein_coding	protein_coding	protein_coding	1	45	2	2.81896	4.0088800000000004	5.1988	0.0120766	0.00151532	0.0962311	0.0352794
chr3	17549069	17549169	1628482	0	-	0.47	(0.44,0.476]	chr3	168211	16	INTRON	INTRON	TBC1D5	ENSG00000131374.15	ENST00000253692.11:ENST00000696125.1:ENST00000414318.2:ENST00000429383.8:ENST00000446818.6:ENST00000415814.6:ENST00000452492.6:ENST00000412981.5:ENST00000428355.5:ENST00000425944.5:ENST00000430169.5:ENST00000445294.5:ENST00000414349.5:ENST00000443499.6:ENST00000444756.5:ENST00000497531.5:ENST00000443386.5:ENST00000507877.5:ENST00000446863.5:ENST00000434420.1:ENST00000444471.5:ENST00000486224.5:ENST00000433533.5:ENST00000481396.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	45	2	2.81896	4.0088800000000004	5.1988	0.0120766	0.00151532	0.0962311	0.0352794
chr10	103344226	103344325	4684753	0	-	0.40404	(0.378,0.408]	chr10	432485	41	INTRON	INTRON	PCGF6	ENSG00000156374.16	ENST00000369847.4:ENST00000337211.8:ENST00000490296.1:ENST00000647574.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	46	2	3.27907	4.00873	4.73839	0.00837252	0.0023379	0.0774402	0.0442989
chr12	281355	281455	5253977	0	-	0.4	(0.378,0.408]	chr12	499881	14	UTR3	UTR3:EXON_MRNA	KDM5A	ENSG00000073614.13	ENST00000399788.7	protein_coding	protein_coding	protein_coding	protein_coding	1	46	2	3.27907	4.00873	4.73839	0.00837252	0.0023379	0.0774402	0.0442989
chr3	172076004	172076104	1559908	0	+	0.4	(0.378,0.408]	chr3	161527	287	INTRON	INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000421757.5:ENST00000469491.5:ENST00000336824.8:ENST00000423424.5:ENST00000416957.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	46	2	3.27907	4.00873	4.73839	0.00837252	0.0023379	0.0774402	0.0442989
chr8	41768917	41769017	3938773	0	-	0.39	(0.378,0.408]	chr8	361123	104	INTRON	INTRON	ANK1	ENSG00000029534.21	ENST00000347528.8:ENST00000265709.13:ENST00000289734.13	protein_coding	protein_coding	protein_coding	protein_coding	2	61	2	2.46345	4.008665000000001	5.55388	0.00827342	5.01023e-4	0.0813266	0.0206993
chr2	31871844	31871943	1089719	0	-	0.454545	(0.44,0.476]	chr2	116861	15	INTRON	INTRON	MEMO1:DPY30	ENSG00000162959.14:ENSG00000162961.14	ENST00000295065.9:ENST00000446765.5:ENST00000404530.6:ENST00000379383.7:ENST00000490459.5:ENST00000426310.6:ENST00000422936.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	62	2	2.21079	4.00863	5.80647	0.0194581	1.22335e-4	0.119831	0.00993581
chr6	135196225	135196317	2962307	0	+	0.282609	(0.28,0.32]	chr6	278610	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MYB	ENSG00000118513.20	ENST00000341911.10:ENST00000442647.7:ENST00000316528.12:ENST00000616088.4:ENST00000339290.9:ENST00000367812.6:ENST00000463282.6:ENST00000525477.5:ENST00000533837.5:ENST00000367814.8:ENST00000527615.5:ENST00000525369.5:ENST00000438901.6:ENST00000525514.5:ENST00000526320.5:ENST00000526889.5:ENST00000529586.5:ENST00000531519.5:ENST00000533808.5:ENST00000528343.5:ENST00000524588.5:ENST00000525002.5:ENST00000525940.5:ENST00000526187.5:ENST00000526565.5:ENST00000528015.5:ENST00000528140.5:ENST00000528345.5:ENST00000528774.5:ENST00000529262.5:ENST00000531634.5:ENST00000531737.5:ENST00000533384.5:ENST00000533624.5:ENST00000534044.5:ENST00000534121.5:ENST00000531845.5:ENST00000534736.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	56	2	2.87382	4.008615	5.14341	0.014868	0.00185891	0.0989021	0.039946
chr15	78878951	78879047	6069603	0	+	0.302083	(0.28,0.32]	chr15	578198	3	INTRON	INTRON	MORF4L1	ENSG00000185787.15	ENST00000379535.8:ENST00000559697.5:ENST00000331268.9:ENST00000557961.5:ENST00000559930.5:ENST00000426013.7:ENST00000558746.5:ENST00000558893.5:ENST00000558830.5:ENST00000558522.5:ENST00000559619.5:ENST00000559345.5:ENST00000561171.5:ENST00000558502.5:ENST00000559258.5:ENST00000559690.5:ENST00000559158.5:ENST00000560422.5:ENST00000558539.5:ENST00000559244.5:ENST00000559751.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	70	2	2.24061	4.008535	5.77646	0.0194267	6.44045e-4	0.119831	0.0231685
chr1	100473375	100473475	173846	0	+	0.43	(0.408,0.44]	chr1	18861	49	INTRON	INTRON	CDC14A	ENSG00000079335.20	ENST00000646665.1:ENST00000644844.1:ENST00000635056.2:ENST00000647005.1:ENST00000647203.1:ENST00000644676.1:ENST00000361544.11:ENST00000370124.8:ENST00000336454.5:ENST00000644813.1:ENST00000646563.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	48	2	2.71911	4.00845	5.29779	0.0189489	3.80479e-4	0.108861	0.0176313
chr12	68823696	68823779	5163139	0	+	0.325301	(0.32,0.35]	chr12	488922	2	SS5_PROX	SS5_PROX:INTRON	MDM2	ENSG00000135679.27	ENST00000258149.11:ENST00000393412.7:ENST00000311420.13:ENST00000393417.8:ENST00000258148.11:ENST00000539479.6:ENST00000523991.5:ENST00000543323.5:ENST00000393415.7:ENST00000393416.7:ENST00000481186.6:ENST00000545204.2:ENST00000544561.6:ENST00000665020.1:ENST00000666617.1:ENST00000671567.1:ENST00000393410.5:ENST00000496959.5:ENST00000299252.8:ENST00000360430.6:ENST00000517852.5:ENST00000546048.5:ENST00000540352.5:ENST00000542502.5:ENST00000537182.5:ENST00000536089.5:ENST00000393413.7:ENST00000350057.9:ENST00000348801.7:ENST00000478070.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	49	2	3.18392	4.008395	4.83287	0.0095071	0.00379806	0.0817766	0.0562562
chr17	82812953	82813052	6694822	0	+	0.444444	(0.44,0.476]	chr17	654897	28	INTRON	INTRON	TBCD	ENSG00000141556.22	ENST00000682479.1:ENST00000682722.1:ENST00000684464.1:ENST00000684544.1:ENST00000681983.1:ENST00000684361.1:ENST00000683184.1:ENST00000683282.1:ENST00000684408.1:ENST00000355528.9:ENST00000683444.1:ENST00000684776.1:ENST00000683041.1:ENST00000684760.1:ENST00000684349.1:ENST00000682213.1:ENST00000683009.1:ENST00000682921.1:ENST00000682107.1:ENST00000539345.6:ENST00000684000.1:ENST00000684188.1:ENST00000684429.1:ENST00000682610.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	46	2	2.66433	4.0083	5.35227	0.0194358	8.47974e-4	0.119831	0.0267232
chr7	100327631	100327725	3586687	0	-	0.468085	(0.44,0.476]	chr7	334342	5	EXON_LNCRNA	EXON_LNCRNA:INTRON	PMS2P1	ENSG00000078319.11	ENST00000685724.1:ENST00000692351.1:ENST00000685541.1:ENST00000676200.2:ENST00000675162.2:ENST00000686838.1:ENST00000676241.1:ENST00000674981.1:ENST00000691424.1:ENST00000689817.1:ENST00000675610.2:ENST00000685901.1:ENST00000687177.1:ENST00000686797.1:ENST00000686203.1:ENST00000687616.1:ENST00000689267.1:ENST00000691905.1:ENST00000688544.1:ENST00000692261.1:ENST00000693192.1:ENST00000693215.1:ENST00000691707.1:ENST00000691275.1:ENST00000692687.1:ENST00000689609.1:ENST00000685852.1:ENST00000691910.1:ENST00000676204.1:ENST00000689000.1:ENST00000693042.1:ENST00000690446.1:ENST00000676274.2:ENST00000685473.1:ENST00000693010.1:ENST00000687801.1:ENST00000689447.1:ENST00000674842.2:ENST00000688104.1:ENST00000686890.1:ENST00000675639.2:ENST00000693302.1:ENST00000676155.2:ENST00000691428.1:ENST00000691046.1:ENST00000691816.1:ENST00000685670.1:ENST00000693490.1:ENST00000685700.1:ENST00000692947.1:ENST00000689907.1:ENST00000691110.1:ENST00000685499.1:ENST00000689019.1:ENST00000689719.1:ENST00000690988.1:ENST00000676256.1:ENST00000687713.1:ENST00000691247.1:ENST00000685805.1:ENST00000685342.1:ENST00000691107.1:ENST00000674972.2:ENST00000431037.4:ENST00000686569.1:ENST00000692675.1:ENST00000686594.1:ENST00000692231.1:ENST00000690914.1:ENST00000685607.1:ENST00000687053.1:ENST00000689538.1:ENST00000691660.1:ENST00000675620.2:ENST00000687026.1:ENST00000692752.1:ENST00000675640.2:ENST00000686825.1:ENST00000691842.1:ENST00000676269.2	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript:transcribed_unprocessed_pseudogene	1	46	2	2.66433	4.0083	5.35227	0.0194358	8.47974e-4	0.119831	0.0267232
chr10	45758716	45758814	4430014	0	+	0.55102	(0.515,0.57]	chr10	408373	12	INTRON	INTRON	WASHC2C	ENSG00000172661.20	ENST00000359860.7:ENST00000374362.6:ENST00000540872.6:ENST00000537517.6:ENST00000623400.4	protein_coding	protein_coding	protein_coding	protein_coding	1	41	2	3.25412	4.00828	4.76244	0.00362147	0.00224554	0.0533855	0.0435144
chr19	36063163	36063263	7056681	0	+	0.53	(0.515,0.57]	chr19	704371	6	INTRON	INTRON	WDR62	ENSG00000075702.19	ENST00000680489.1:ENST00000378860.8:ENST00000401500.7:ENST00000680564.1:ENST00000680590.1:ENST00000679682.1:ENST00000679714.1:ENST00000680403.1:ENST00000680359.1:ENST00000644764.2:ENST00000680321.1:ENST00000681542.1:ENST00000427823.3:ENST00000589953.2:ENST00000681809.1:ENST00000679757.1:ENST00000680806.1:ENST00000679858.1:ENST00000681625.1:ENST00000587391.6:ENST00000270301.12	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	41	2	3.25412	4.00828	4.76244	0.00362147	0.00224554	0.0533855	0.0435144
chr1	247103638	247103738	683358	0	-	0.35	(0.32,0.35]	chr1	80137	3	SS5_PROX	SS5_PROX:INTRON	ZNF669	ENSG00000188295.15	ENST00000448299.7:ENST00000343381.10:ENST00000366501.1:ENST00000366500.5:ENST00000476158.2	protein_coding	protein_coding	protein_coding	protein_coding	1	54	2	2.31405	4.0082249999999995	5.7024	0.0517107	5.25722e-4	0.176696	0.0210958
chr17	21023600	21023699	6742973	0	-	0.444444	(0.44,0.476]	chr17	662061	20	INTRON	INTRON	USP22	ENSG00000124422.12	ENST00000261497.9:ENST00000537526.6:ENST00000455117.6:ENST00000579645.5:ENST00000476111.5:ENST00000584538.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	49	2	3.67739	4.00819	4.33899	0.0206616	3.8961e-4	0.110999	0.0177751
chr2	135127156	135127253	873429	0	+	0.443299	(0.44,0.476]	chr2	97791	1	INTRON	INTRON	RAB3GAP1	ENSG00000115839.19	ENST00000539493.3:ENST00000688088.1:ENST00000693554.1:ENST00000690785.1:ENST00000689880.1:ENST00000264158.13:ENST00000690208.1:ENST00000691478.1:ENST00000686114.1:ENST00000685967.1:ENST00000442034.5:ENST00000687199.1:ENST00000691339.1:ENST00000688182.1:ENST00000487003.5:ENST00000489858.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	49	2	3.67739	4.00819	4.33899	0.0206616	3.8961e-4	0.110999	0.0177751
chr1	65369970	65370069	136701	0	+	0.353535	(0.35,0.378]	chr1	15376	34	INTRON	INTRON	DNAJC6	ENSG00000116675.16	ENST00000494710.6:ENST00000263441.11:ENST00000395325.7:ENST00000371069.5:ENST00000472787.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	64	2	2.2877	4.008175	5.72865	0.0155765	3.18898e-4	0.109411	0.016499
chr3	15054555	15054653	1619934	0	-	0.367347	(0.35,0.378]	chr3	167447	7	INTRON	INTRON	MRPS25	ENSG00000131368.9	ENST00000695375.1:ENST00000695376.1:ENST00000695377.1:ENST00000695378.1:ENST00000695379.1:ENST00000695380.1:ENST00000695381.1:ENST00000695382.1:ENST00000496484.2:ENST00000695334.1:ENST00000695384.1:ENST00000695322.1:ENST00000447299.2:ENST00000695383.1:ENST00000474866.2:ENST00000695385.1:ENST00000695386.1:ENST00000420267.6:ENST00000695387.1:ENST00000695388.1:ENST00000695389.1:ENST00000695390.1:ENST00000695391.1:ENST00000695392.1:ENST00000449354.7:ENST00000695393.1:ENST00000695394.1:ENST00000253686.7:ENST00000695395.1:ENST00000695323.1:ENST00000444840.6:ENST00000695396.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	64	2	2.2877	4.008175	5.72865	0.0155765	3.18898e-4	0.109411	0.016499
chr2	169831250	169831350	908181	0	+	0.43	(0.408,0.44]	chr2	100222	28	INTRON	INTRON	UBR3	ENSG00000144357.18	ENST00000272793.11	protein_coding	protein_coding	protein_coding	protein_coding	2	64	2	3.19065	4.007975	4.8253	0.0056738	3.2984e-4	0.0653997	0.0161352
chr3	196745952	196746052	1595554	0	+	0.33	(0.32,0.35]	chr3	165300	54	INTRON	INTRON	PAK2	ENSG00000180370.10	ENST00000327134.7	protein_coding	protein_coding	protein_coding	protein_coding	1	49	2	2.78073	4.0079650000000004	5.2352	0.01481	0.0028268	0.106702	0.0472361
chr5	625278	625378	2313509	0	+	0.35	(0.32,0.35]	chr5	223852	3	INTRON	INTRON	CEP72	ENSG00000112877.8	ENST00000264935.6	protein_coding	protein_coding	protein_coding	protein_coding	1	49	2	2.78073	4.0079650000000004	5.2352	0.01481	0.0028268	0.106702	0.0472361
chr13	110664293	110664384	5649686	0	-	0.516484	(0.515,0.57]	chr13	538241	4	INTRON	INTRON	CARS2	ENSG00000134905.17	ENST00000257347.9:ENST00000537802.5:ENST00000481787.6:ENST00000535615.5:ENST00000535398.5:ENST00000543487.5:ENST00000541362.5:ENST00000545506.5:ENST00000539405.1:ENST00000537743.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	41	2	2.9114	4.00794	5.10448	0.00826019	0.0010345	0.0813266	0.029231300000000002
chr2	25874474	25874574	1085502	0	-	0.54	(0.515,0.57]	chr2	115962	286	INTRON	INTRON	ASXL2	ENSG00000143970.18	ENST00000435504.9:ENST00000336112.9:ENST00000682588.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	41	2	2.9114	4.00794	5.10448	0.00826019	0.0010345	0.0813266	0.029231300000000002
chr10	42351339	42351439	4603287	0	-	0.3	(0.28,0.32]	chr10	424077	104	INTRON	INTRON	ENSG00000215146	ENSG00000215146.5	ENST00000609841.1:ENST00000650175.1:ENST00000423987.2:ENST00000609034.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	2	82	2	2.87233	4.0078700000000005	5.14341	0.0028269	0.00185891	0.0472361	0.039946
chr7	36441076	36441175	3307537	0	+	0.30303	(0.28,0.32]	chr7	307197	14	INTRON	INTRON	ANLN	ENSG00000011426.11	ENST00000396068.6:ENST00000265748.7:ENST00000428612.5:ENST00000457743.1	protein_coding	protein_coding	protein_coding	protein_coding	2	76	2	2.14002	4.0076350000000005	5.87525	0.0304107	8.91612e-5	0.130461	0.00793468
chr2	71420031	71420130	807931	0	+	0.323232	(0.32,0.35]	chr2	90291	10	INTRON	INTRON	ZNF638	ENSG00000075292.19	ENST00000409544.5:ENST00000264447.9:ENST00000487638.5:ENST00000494241.5:ENST00000409407.4:ENST00000483421.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	54	2	2.4458	4.007435	5.56907	0.0425977	2.27532e-4	0.148082	0.0133228
chr14	30606212	30606312	5674876	0	+	0.25	[0,0.28]	chr14	540580	4	SS5_PROX	SS5_PROX:INTRON	G2E3	ENSG00000092140.16	ENST00000206595.11:ENST00000438909.6:ENST00000544007.5:ENST00000648008.1:ENST00000553504.5:ENST00000548934.1:ENST00000547638.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	55	2	2.95729	4.007385	5.05748	0.0113653	0.0101824	0.089002	0.0886611
chr7	155661680	155661780	3452065	0	+	0.38	(0.378,0.408]	chr7	322642	164	INTRON	INTRON	RBM33	ENSG00000184863.11	ENST00000287912.7:ENST00000401878.8:ENST00000392759.7	protein_coding	protein_coding	protein_coding	protein_coding	1	49	2	2.90162	4.007385	5.11315	0.0113157	9.26795e-4	0.0886121	0.0278442
chr4	1957532	1957632	1911465	0	+	0.56	(0.515,0.57]	chr4	191835	2	SS3_PROX	SS3_PROX:INTRON	NSD2	ENSG00000109685.19	ENST00000508803.6:ENST00000382891.9:ENST00000353275.9:ENST00000382892.6:ENST00000382895.7:ENST00000312087.10:ENST00000677559.1:ENST00000482415.6:ENST00000382888.3:ENST00000507094.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	43	2	3.09002	4.007375	4.92473	0.00491099	0.00108255	0.0609494	0.0300133
chrX	131812014	131812113	7892811	0	-	0.535354	(0.515,0.57]	chrX	803459	66	INTRON	INTRON	FIRRE	ENSG00000213468.7	ENST00000649541.1:ENST00000663405.1:ENST00000665076.1:ENST00000654978.1:ENST00000647966.1:ENST00000427391.2:ENST00000668308.1:ENST00000658376.1:ENST00000650184.1:ENST00000653136.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	1	43	2	3.09002	4.007375	4.92473	0.00491099	0.00108255	0.0609494	0.0300133
chr6	147948706	147948804	2993487	0	+	0.295918	(0.28,0.32]	chr6	280183	8	INTRON	INTRON	ENSG00000227681	ENSG00000227681.5	ENST00000427015.1	lncRNA	lncRNA	lncRNA	lncRNA	1	51	2	2.86113	4.0073550000000004	5.15358	0.0122675	0.0052282	0.0969406	0.0633615
chr15	99636469	99636569	6114857	0	+	0.5	(0.476,0.515]	chr15	582076	29	INTRON	INTRON	MEF2A	ENSG00000068305.18	ENST00000560493.5:ENST00000354410.9:ENST00000558812.5:ENST00000558856.5:ENST00000685785.1:ENST00000559036.5:ENST00000557785.5:ENST00000558983.5:ENST00000557942.6:ENST00000338042.11:ENST00000558049.5:ENST00000449277.6:ENST00000690055.1:ENST00000691492.1:ENST00000686611.1:ENST00000559903.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	45	2	3.2463	4.007285	4.76827	0.00600704	0.00262374	0.0674604	0.0470772
chr7	77540231	77540330	3342041	0	+	0.494949	(0.476,0.515]	chr7	311308	10	INTRON	INTRON	PTPN12	ENSG00000127947.16	ENST00000248594.11:ENST00000460731.5:ENST00000523952.5:ENST00000433369.6:ENST00000415482.6:ENST00000435495.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	45	2	3.2463	4.007285	4.76827	0.00600704	0.00262374	0.0674604	0.0470772
chr10	119159227	119159327	4705124	0	-	0.5	(0.476,0.515]	chr10	434063	1	SS5_PROX	SS5_PROX:INTRON	SFXN4	ENSG00000183605.17	ENST00000355697.7:ENST00000461438.5:ENST00000369131.8:ENST00000466218.5:ENST00000419372.5:ENST00000462913.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	45	2	2.80729	4.00687	5.20645	0.0126008	0.00136049	0.0980703	0.0336321
chr2	135758063	135758162	876101	0	+	0.414141	(0.408,0.44]	chr2	98077	20	INTRON	INTRON	UBXN4	ENSG00000144224.17	ENST00000426921.5:ENST00000272638.14:ENST00000416538.5:ENST00000490163.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	45	2	3.25948	4.00673	4.75398	0.00703931	0.00246454	0.0718189	0.0459102
chr9	5015472	5015572	4096125	0	+	0.3	(0.28,0.32]	chr9	373235	291	INTRON	INTRON	JAK2	ENSG00000096968.14	ENST00000636127.1:ENST00000476574.5:ENST00000381652.4	protein_coding	protein_coding	protein_coding	protein_coding	3	83	2	2.41625	4.0067	5.59715	0.00419958	0.00123856	0.0592209	0.0322669
chr7	158766153	158766253	3689172	0	-	0.4	(0.378,0.408]	chr7	342381	9	INTRON	INTRON	ESYT2	ENSG00000117868.18	ENST00000251527.10:ENST00000275418.13:ENST00000652148.1	protein_coding	protein_coding	protein_coding	protein_coding	8	116	2	1.65294	4.006435	6.35993	0.0106624	1.15614e-5	0.0916795	0.00268546
chr11	14478873	14478970	4918110	0	-	0.319588	(0.28,0.32]	chr11	460913	15	INTRON	INTRON	COPB1	ENSG00000129083.13	ENST00000249923.7:ENST00000439561.7:ENST00000534234.5	protein_coding	protein_coding	protein_coding	protein_coding	6	336	2	3.36318	4.0063949999999995	4.64961	9.51339e-5	7.68706e-9	0.00870192	2.98029e-5
chr19	3407101	3407200	7000032	0	+	0.50505	(0.476,0.515]	chr19	694173	245	INTRON	INTRON	NFIC	ENSG00000141905.19	ENST00000641145.1:ENST00000589123.5:ENST00000395111.7:ENST00000586919.5:ENST00000341919.7:ENST00000443272.3:ENST00000590282.5	protein_coding	protein_coding	protein_coding	protein_coding	1	46	2	2.65268	4.006315000000001	5.35995	0.0201975	7.54256e-4	0.121243	0.0251179
chr9	111907507	111907607	4184558	0	+	0.37	(0.35,0.378]	chr9	381684	98	INTRON	INTRON	UGCG	ENSG00000148154.10	ENST00000374279.4:ENST00000489355.1:ENST00000495085.1:ENST00000490110.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	75	2	2.35838	4.006275	5.65417	0.00468156	4.33402e-4	0.0631419	0.0190829
chr20	35283577	35283675	7334074	0	-	0.561224	(0.515,0.57]	chr20	747110	24	INTRON	INTRON	EIF6	ENSG00000242372.9	ENST00000675032.1:ENST00000447927.6:ENST00000374443.7:ENST00000374436.7:ENST00000440766.5:ENST00000374450.8:ENST00000415116.1:ENST00000462894.1:ENST00000456600.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	70	2	2.54372	4.006265	5.46881	0.00205444	9.03271e-5	0.0409693	0.00795396
chr12	122139832	122139931	5240496	0	+	0.525253	(0.515,0.57]	chr12	497560	5	INTRON	INTRON	MLXIP	ENSG00000175727.14	ENST00000319080.12:ENST00000538698.5:ENST00000542417.1	protein_coding	protein_coding	protein_coding	protein_coding	2	59	2	2.88267	4.006205	5.12974	0.00152842	4.54392e-4	0.0353936	0.0192381
chr10	131939860	131939945	4537258	0	+	0.270588	[0,0.28]	chr10	418879	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	PPP2R2D	ENSG00000175470.20	ENST00000455566.6:ENST00000616467.4:ENST00000482010.6:ENST00000470416.5:ENST00000517472.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	75	2	2.6632	4.00605	5.3489	0.00515076	0.00514751	0.0650394	0.062965
chr19	19042026	19042118	7033924	0	+	0.434783	(0.408,0.44]	chr19	701178	9	INTRON	INTRON	ARMC6	ENSG00000105676.14	ENST00000392335.6:ENST00000537263.5:ENST00000535612.6:ENST00000540707.5:ENST00000269932.10:ENST00000541725.5:ENST00000546344.5:ENST00000540792.5:ENST00000536098.5:ENST00000541898.5:ENST00000539985.5:ENST00000543877.1:ENST00000545091.5:ENST00000535288.1:ENST00000538663.5:ENST00000392336.7:ENST00000535758.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	62	2	2.21238	4.006005	5.79963	0.0193525	1.39468e-4	0.119831	0.0107072
chrX	73971273	73971373	7682371	0	+	0.42	(0.408,0.44]	chrX	786638	29	INTRON	INTRON	JPX	ENSG00000225470.8	ENST00000664637.1:ENST00000639185.1:ENST00000655090.1:ENST00000640437.1:ENST00000660546.1:ENST00000667886.1:ENST00000660840.1:ENST00000657179.1:ENST00000670506.1:ENST00000657910.1:ENST00000662120.1:ENST00000671207.1:ENST00000659254.1:ENST00000656624.1:ENST00000667573.1:ENST00000660856.1:ENST00000660836.1:ENST00000668590.1:ENST00000658649.1:ENST00000414209.6:ENST00000654137.1:ENST00000670994.1:ENST00000602772.5:ENST00000655879.1:ENST00000657372.1:ENST00000657096.1:ENST00000602985.6:ENST00000670685.1:ENST00000670503.1:ENST00000663027.1:ENST00000654995.1:ENST00000602895.6:ENST00000654374.1:ENST00000660087.1:ENST00000665032.1:ENST00000671336.1:ENST00000671476.1:ENST00000667057.1:ENST00000670192.1:ENST00000670464.1:ENST00000665345.1:ENST00000661546.1:ENST00000662543.1:ENST00000602938.6:ENST00000664295.1:ENST00000654005.1:ENST00000669149.1:ENST00000659852.1:ENST00000656509.1:ENST00000602294.6:ENST00000667294.1:ENST00000663470.1:ENST00000602920.6:ENST00000671021.1:ENST00000659849.1:ENST00000667937.1:ENST00000661130.1:ENST00000654196.1:ENST00000655994.1:ENST00000659373.1:ENST00000662239.1:ENST00000670805.1:ENST00000656263.1:ENST00000653069.1:ENST00000657638.1:ENST00000653808.1:ENST00000653929.1:ENST00000653885.1:ENST00000659023.1:ENST00000602546.5:ENST00000659622.1:ENST00000671518.1:ENST00000670408.1	lncRNA	lncRNA	lncRNA	lncRNA	1	46	2	2.66579	4.005635	5.34548	0.019342	9.40657e-4	0.119831	0.0280776
chr1	25337919	25338017	403269	0	-	0.55102	(0.515,0.57]	chr1	48413	10	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	RSRP1	ENSG00000117616.18	ENST00000473314.6:ENST00000561867.1:ENST00000568996.1:ENST00000566599.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	54	2	2.68132	4.005445	5.32957	0.00324198	4.06834e-4	0.0524329	0.0185763
chr1	184692982	184693080	600547	0	-	0.357143	(0.35,0.378]	chr1	71575	29	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	EDEM3	ENSG00000116406.20	ENST00000318130.13:ENST00000367512.8:ENST00000439962.1:ENST00000466392.2:ENST00000689766.1:ENST00000686047.1:ENST00000687113.1:ENST00000686225.1:ENST00000685596.1:ENST00000685249.1:ENST00000687397.1:ENST00000692170.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	75	2	2.39519	4.005315	5.61544	0.00401951	5.06729e-4	0.0578189	0.020816
chr2	15505812	15505912	1072606	0	-	0.32	(0.28,0.32]	chr2	114435	12	INTRON	INTRON	NBAS	ENSG00000151779.13	ENST00000281513.10:ENST00000427792.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	57	2	2.39347	4.0053	5.61713	0.0504457	2.86819e-4	0.156383	0.0150568
chr1	35975494	35975593	71594	0	+	0.323232	(0.32,0.35]	chr1	9158	16	INTRON	INTRON	AGO3	ENSG00000126070.20	ENST00000324350.9:ENST00000397828.3:ENST00000634486.1:ENST00000373191.9:ENST00000246314.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	65	2	2.58753	4.0052900000000005	5.42305	0.00560122	0.00149027	0.0678837	0.035
chr9	130613527	130613613	4213436	0	+	0.325581	(0.32,0.35]	chr9	386296	1	INTRON	INTRON	FUBP3	ENSG00000107164.16	ENST00000319725.10:ENST00000650723.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	65	2	2.58753	4.0052900000000005	5.42305	0.00560122	0.00149027	0.0678837	0.035
chr7	136144471	136144571	3431698	0	+	0.39	(0.378,0.408]	chr7	319911	269	INTRON	INTRON	ENSG00000232053	ENSG00000232053.7	ENST00000657456.1:ENST00000668062.1:ENST00000668668.1:ENST00000445293.6:ENST00000659747.1:ENST00000668896.1:ENST00000435996.1	lncRNA	lncRNA	lncRNA	lncRNA	3	75	2	2.73003	4.00518	5.28033	0.00143651	8.35208e-4	0.0340925	0.0263691
chr6	38791774	38791874	2861182	0	+	0.38	(0.378,0.408]	chr6	270402	1	SS5_PROX	SS5_PROX:INTRON	DNAH8	ENSG00000124721.18	ENST00000327475.11:ENST00000449981.6:ENST00000359357.7	protein_coding	protein_coding	protein_coding	protein_coding	2	62	2	2.94613	4.005125	5.06412	0.0030522	0.00112461	0.0493883	0.0308177
chr20	32395418	32395518	7256197	0	+	0.25	[0,0.28]	chr20	737076	230	INTRON	INTRON	ASXL1	ENSG00000171456.21	ENST00000651418.1:ENST00000375687.10:ENST00000613218.4:ENST00000644587.1:ENST00000620121.4:ENST00000646985.1:ENST00000643168.1:ENST00000306058.9:ENST00000645688.1:ENST00000470145.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	77	2	2.8486	4.00495	5.1613	0.00866441	0.00254189	0.0787025	0.0465056
chr9	137745943	137746040	4224769	0	+	0.402062	(0.378,0.408]	chr9	388258	5	UTR3	UTR3:EXON_MRNA:INTRON	EHMT1	ENSG00000181090.21	ENST00000462484.5:ENST00000371394.6:ENST00000460843.6:ENST00000629335.2:ENST00000636027.1:ENST00000637161.1:ENST00000637261.1:ENST00000637977.1:ENST00000626066.2:ENST00000638071.1:ENST00000495657.5:ENST00000637318.1:ENST00000640639.1:ENST00000629808.2:ENST00000462942.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	47	2	2.63247	4.00493	5.37739	0.0215745	0.0010014	0.123836	0.0288906
chr20	63888694	63888793	7300926	0	+	0.575758	(0.57,1]	chr20	743123	12	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	TPD52L2	ENSG00000101150.18	ENST00000611972.4:ENST00000615907.4:ENST00000369927.8:ENST00000346249.9:ENST00000348257.9:ENST00000352482.8:ENST00000351424.8:ENST00000217121.9:ENST00000358548.4:ENST00000474176.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	53	2	2.2837	4.004845	5.72599	0.00256797	3.45794e-6	0.0466761	0.00131943
chr5	32173445	32173545	2597507	0	-	0.53	(0.515,0.57]	chr5	246745	3	SS5_PROX	SS5_PROX:INTRON	GOLPH3	ENSG00000113384.14	ENST00000265070.7:ENST00000503610.5:ENST00000512668.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	13	439	2	3.98759	4.0047999999999995	4.02201	6.24211e-9	1.0523e-9	2.01226e-5	7.82943e-6
chr7	100313721	100313821	3586545	0	-	0.54	(0.515,0.57]	chr7	334330	126	INTRON	INTRON	PMS2P1	ENSG00000078319.11	ENST00000685724.1:ENST00000692351.1:ENST00000685541.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	4	74	2	2.16051	4.00476	5.84901	0.0046825	3.33916e-5	0.0631419	0.00487221
chr7	12341758	12341858	3484784	0	-	0.35	(0.32,0.35]	chr7	325829	3	SS5_PROX	SS5_PROX:INTRON	VWDE	ENSG00000146530.15	ENST00000275358.8:ENST00000452576.6:ENST00000521169.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	86	2	2.06533	4.00459	5.94385	0.0174225	3.75519e-5	0.10453	0.00490694
chr12	50508838	50508938	5137188	0	+	0.54	(0.515,0.57]	chr12	484468	32	INTRON	INTRON	DIP2B	ENSG00000066084.13	ENST00000301180.10:ENST00000549620.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	75	2	1.9888	4.004495	6.02019	0.00963364	1.31473e-5	0.086971	0.00286967
chr14	55293146	55293246	5726013	0	+	0.55	(0.515,0.57]	chr14	543454	77	INTRON	INTRON	FBXO34	ENSG00000178974.11	ENST00000681400.1:ENST00000681904.1:ENST00000679934.1:ENST00000681074.1:ENST00000680682.1:ENST00000680658.1:ENST00000313833.5:ENST00000554940.1:ENST00000440021.1:ENST00000555087.1:ENST00000557647.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	54	2	2.62817	4.004465	5.38076	0.004048	3.24968e-4	0.0578376	0.0165891
chr1	29094361	29094461	60784	0	+	0.46	(0.44,0.476]	chr1	7763	99	INTRON	INTRON	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000373798.5:ENST00000649674.1:ENST00000343067.9:ENST00000349460.9:ENST00000646871.1:ENST00000488277.1:ENST00000490308.2:ENST00000650132.1:ENST00000649992.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	48	2	3.07862	4.00415	4.92968	0.0060153	0.00171443	0.0674604	0.0381936
chr10	45914485	45914584	4608081	0	-	0.474747	(0.44,0.476]	chr10	424473	34	INTRON	INTRON	PARGP1	ENSG00000239883.9	ENST00000688192.1:ENST00000686367.1:ENST00000693310.1:ENST00000417555.2:ENST00000687844.1:ENST00000687550.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	1	48	2	3.07862	4.00415	4.92968	0.0060153	0.00171443	0.0674604	0.0381936
chr22	19406883	19406983	7554173	0	-	0.46	(0.44,0.476]	chr22	772299	3	SS5_PROX	SS5_PROX:INTRON	HIRA:C22orf39	ENSG00000100084.14:ENSG00000242259.9	ENST00000263208.5:ENST00000340170.8:ENST00000509549.5:ENST00000464189.5:ENST00000452818.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	48	2	3.07862	4.00415	4.92968	0.0060153	0.00171443	0.0674604	0.0381936
chr9	131454575	131454675	4217585	0	+	0.46	(0.44,0.476]	chr9	386767	1	SS3_PROX	SS3_PROX:INTRON	PRRC2B	ENSG00000288701.1	ENST00000684596.1:ENST00000683519.1:ENST00000682501.1	protein_coding	protein_coding	protein_coding	protein_coding	1	48	2	3.07862	4.00415	4.92968	0.0060153	0.00171443	0.0674604	0.0381936
chr6	36028773	36028851	2853063	0	+	0.371795	(0.35,0.378]	chr6	269618	1	INTRON	INTRON	MAPK14	ENSG00000112062.11	ENST00000622903.4:ENST00000229795.7:ENST00000468133.5:ENST00000229794.9:ENST00000310795.8:ENST00000491957.5:ENST00000496250.5:ENST00000474429.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	48	2	2.6498	4.00404	5.35828	0.0210137	0.00135282	0.122348	0.0336321
chr16	24786240	24786340	6329785	0	+	0.26	[0,0.28]	chr16	605958	74	INTRON	INTRON	TNRC6A	ENSG00000090905.19	ENST00000395799.8:ENST00000315183.11:ENST00000491718.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	55	2	3.00498	4.003805	5.00263	0.013055	0.00876063	0.093385	0.0846118
chr14	101895953	101896053	5819866	0	+	0.36	(0.35,0.378]	chr14	551917	10	INTRON	INTRON	PPP2R5C	ENSG00000078304.20	ENST00000694906.1:ENST00000422945.6:ENST00000328724.9:ENST00000350249.7:ENST00000334743.9:ENST00000445439.7:ENST00000557095.5:ENST00000556218.5:ENST00000557534.1:ENST00000557716.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	47	2	3.21677	4.00378	4.79079	0.00846427	0.00313804	0.0776969	0.0514466
chr3	150605279	150605379	1534466	0	+	0.36	(0.35,0.378]	chr3	159930	12	INTRON	INTRON	SELENOT	ENSG00000198843.14	ENST00000480740.5:ENST00000477889.5:ENST00000471696.6:ENST00000492132.1:ENST00000485923.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	47	2	3.21677	4.00378	4.79079	0.00846427	0.00313804	0.0776969	0.0514466
chrX	110317398	110317498	7862949	0	-	0.66	(0.57,1]	chrX	801524	4	SS5_PROX	SS5_PROX:INTRON	AMMECR1	ENSG00000101935.12	ENST00000686065.1:ENST00000262844.10:ENST00000372059.6:ENST00000372057.1:ENST00000680410.1:ENST00000473662.1:ENST00000496695.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	48	2	2.30825	4.003765	5.69928	0.00499769	2.48853e-6	0.0617433	0.00100001
chr16	1960453	1960552	6276475	0	+	0.585859	(0.57,1]	chr16	599781	3	INTRON	INTRON	NDUFB10	ENSG00000140990.15	ENST00000268668.11:ENST00000543683.6:ENST00000565031.1:ENST00000569148.1:ENST00000570172.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	32	2	3.56369	4.003675	4.44366	0.00210922	4.26536e-4	0.0425419	0.0189958
chr1	9540945	9541045	17147	0	+	0.52	(0.515,0.57]	chr1	1570	8	INTRON	INTRON	SLC25A33	ENSG00000171612.7	ENST00000302692.7	protein_coding	protein_coding	protein_coding	protein_coding	2	57	2	2.53845	4.00363	5.46881	0.00632226	9.03271e-5	0.0687526	0.00795396
chr14	21235691	21235781	5834828	0	-	0.344444	(0.32,0.35]	chr14	554453	5	INTRON	INTRON	HNRNPC	ENSG00000092199.19	ENST00000336053.10:ENST00000553300.6:ENST00000554969.5:ENST00000556142.5:ENST00000554455.5:ENST00000430246.6:ENST00000553753.5:ENST00000555309.5:ENST00000555914.5:ENST00000557442.5:ENST00000556628.5:ENST00000556513.5:ENST00000555883.5:ENST00000557201.5:ENST00000556897.5:ENST00000420743.6:ENST00000554539.5:ENST00000554383.5:ENST00000555215.5:ENST00000555137.5:ENST00000554891.5:ENST00000556226.5:ENST00000555176.5:ENST00000553614.5:ENST00000557336.1:ENST00000557768.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	53	2	2.57263	4.003615	5.4346	0.0312297	4.09682e-4	0.13151	0.0181306
chrX	74604090	74604190	7841843	0	-	0.26	[0,0.28]	chrX	799787	77	INTRON	INTRON	RLIM	ENSG00000131263.13	ENST00000332687.11:ENST00000349225.2	protein_coding	protein_coding	protein_coding	protein_coding	1	55	2	2.74901	4.0035799999999995	5.25815	0.0188843	0.0066548	0.118148	0.0703807
chr3	179358142	179358240	1567034	0	+	0.479592	(0.476,0.515]	chr3	162075	58	INTRON	INTRON	MFN1	ENSG00000171109.19	ENST00000471841.6:ENST00000357390.8:ENST00000467174.6:ENST00000263969.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	82	2	1.99457	4.00353	6.01249	0.009924	4.02459e-5	0.0877296	0.00539487
chr19	909598	909698	7110902	0	-	0.49	(0.476,0.515]	chr19	714174	66	INTRON	INTRON	R3HDM4	ENSG00000198858.10	ENST00000589428.5:ENST00000361574.10:ENST00000587975.2:ENST00000590454.2:ENST00000589445.1:ENST00000626716.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	47	2	2.8863	4.00351	5.12072	0.0111679	8.42139e-4	0.0877435	0.0263691
chr5	131323127	131323227	2485228	0	+	0.48	(0.476,0.515]	chr5	237120	66	INTRON	INTRON	CDC42SE2	ENSG00000158985.14	ENST00000502840.5:ENST00000511432.5:ENST00000506419.5:ENST00000395246.5:ENST00000505065.2:ENST00000504701.5:ENST00000503291.5:ENST00000360515.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	47	2	2.8863	4.00351	5.12072	0.0111679	8.42139e-4	0.0877435	0.0263691
chr16	18165143	18165242	6454286	0	-	0.292929	(0.28,0.32]	chr16	621964	137	INTRON	INTRON	ENSG00000260242	ENSG00000260242.1	ENST00000563866.1	lncRNA	lncRNA	lncRNA	lncRNA	1	51	2	3.07744	4.0033650000000005	4.92929	0.0098607	0.00604536	0.0838128	0.0700813
chr2	47802821	47802919	777240	0	+	0.377551	(0.35,0.378]	chr2	87435	13	INTRON	INTRON	MSH6	ENSG00000116062.18	ENST00000652107.1:ENST00000445503.5:ENST00000614496.4:ENST00000234420.11:ENST00000673637.1:ENST00000540021.6:ENST00000538136.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	47	2	2.79643	4.003305	5.21018	0.013543	0.00228003	0.101363	0.0426265
chr11	66795681	66795780	4811859	0	+	0.292929	(0.28,0.32]	chr11	447962	71	INTRON	INTRON	C11orf80	ENSG00000173715.18	ENST00000524551.5:ENST00000525908.6:ENST00000540737.7:ENST00000527634.5:ENST00000527368.5:ENST00000531400.6:ENST00000642265.1:ENST00000532565.6:ENST00000525449.6:ENST00000360962.10:ENST00000532727.5:ENST00000532089.5:ENST00000526260.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	51	2	2.80157	4.0030850000000004	5.2046	0.0147132	0.00448664	0.106558	0.0593175
chr2	216050897	216050997	1328101	0	-	0.29	(0.28,0.32]	chr2	138945	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PECR	ENSG00000115425.14	ENST00000442122.5:ENST00000265322.8:ENST00000461330.5:ENST00000464737.5:ENST00000497889.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	51	2	2.80157	4.0030850000000004	5.2046	0.0147132	0.00448664	0.106558	0.0593175
chr1	88827880	88827980	157222	0	+	0.49	(0.476,0.515]	chr1	17128	31	INTRON	INTRON	PKN2	ENSG00000065243.20	ENST00000370521.8:ENST00000370513.9:ENST00000449189.1	protein_coding	protein_coding	protein_coding	protein_coding	1	48	2	3.15202	4.002905	4.85379	0.00455841	0.00234214	0.0595107	0.0442989
chr7	77841197	77841297	3344376	0	+	0.48	(0.476,0.515]	chr7	311490	5	INTRON	INTRON	PHTF2	ENSG00000006576.17	ENST00000422959.7:ENST00000416283.6:ENST00000307305.12:ENST00000424760.5:ENST00000415251.6:ENST00000275575.11:ENST00000450574.5:ENST00000248550.7	protein_coding	protein_coding	protein_coding	protein_coding	1	48	2	3.15202	4.002905	4.85379	0.00455841	0.00234214	0.0595107	0.0442989
chr17	44877778	44877876	6781326	0	-	0.459184	(0.44,0.476]	chr17	668831	13	INTRON	INTRON	EFTUD2	ENSG00000108883.13	ENST00000426333.7:ENST00000592576.5:ENST00000591382.5:ENST00000402521.7:ENST00000587957.1:ENST00000593200.5:ENST00000588374.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	72	2	2.12992	4.002775	5.87563	0.010975	8.84961e-5	0.092635	0.00842626
chr7	100082382	100082465	3585268	0	-	0.53012	(0.515,0.57]	chr7	334088	2	UTR5	UTR5:EXON_MRNA	ZNF3	ENSG00000166526.18	ENST00000428683.5	protein_coding	protein_coding	protein_coding	protein_coding	5	93	2	2.43927	4.00272	5.56617	7.64103e-4	5.44229e-5	0.0253443	0.00603408
chr10	21707488	21707588	4406165	0	+	0.4	(0.378,0.408]	chr10	406537	105	INTRON	INTRON	MLLT10	ENSG00000078403.17	ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000651298.1:ENST00000377059.7:ENST00000651382.1:ENST00000438473.6:ENST00000420525.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	61	2	2.41037	4.002595	5.59482	0.0100185	4.23783e-4	0.0880217	0.0189958
chr19	944813	944912	6992678	0	+	0.606061	(0.57,1]	chr19	692392	117	INTRON	INTRON	ARID3A	ENSG00000116017.11	ENST00000263620.8:ENST00000587532.5:ENST00000457152.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	30	2	3.40333	4.00247	4.60161	0.00142229	9.20604e-4	0.0340865	0.0278392
chr3	158388584	158388684	1541074	0	+	0.45	(0.44,0.476]	chr3	160318	333	INTRON	INTRON	RSRC1	ENSG00000174891.14	ENST00000480820.5:ENST00000295930.7:ENST00000471994.5:ENST00000683733.1:ENST00000682221.1:ENST00000683831.1:ENST00000683516.1:ENST00000482822.3:ENST00000476899.6:ENST00000464171.5:ENST00000611884.5:ENST00000682164.1:ENST00000684604.1:ENST00000683899.1:ENST00000682500.1:ENST00000684683.1:ENST00000312179.10:ENST00000475278.6:ENST00000480119.5:ENST00000471911.5:ENST00000683137.1:ENST00000684353.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	49	2	3.22192	4.002425000000001	4.78293	0.00360821	0.00292033	0.0533855	0.0494641
chr13	113211383	113211482	5548305	0	+	0.525253	(0.515,0.57]	chr13	530119	9	INTRON	INTRON	CUL4A	ENSG00000139842.15	ENST00000375441.7:ENST00000326335.8:ENST00000451881.5:ENST00000617546.4:ENST00000488558.2:ENST00000375440.9:ENST00000474116.5:ENST00000494985.5:ENST00000463426.5:ENST00000498562.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	74	2	2.34988	4.0023100000000005	5.65474	0.00194926	9.00945e-5	0.0410995	0.00844245
chr21	46542687	46542784	7423361	0	+	0.608247	(0.57,1]	chr21	757064	4	INTRON	INTRON	DIP2A	ENSG00000160305.18	ENST00000417564.3:ENST00000651436.1:ENST00000400274.5:ENST00000457905.7:ENST00000466639.5:ENST00000435722.7:ENST00000473752.5:ENST00000494435.5:ENST00000480553.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	30	2	3.02967	4.0021249999999995	4.97458	0.00471306	2.67728e-4	0.0631419	0.0149989
chr7	8261599	8261699	3481263	0	-	0.59	(0.57,1]	chr7	325755	2	SS5_PROX	SS5_PROX:INTRON	ICA1	ENSG00000003147.19	ENST00000402384.8:ENST00000406470.6:ENST00000650486.1:ENST00000265577.11:ENST00000396675.7:ENST00000339809.10:ENST00000455539.5:ENST00000486677.1:ENST00000407906.5:ENST00000447326.5:ENST00000430867.5:ENST00000457755.5:ENST00000446305.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	30	2	3.02967	4.0021249999999995	4.97458	0.00471306	2.67728e-4	0.0631419	0.0149989
chr7	74659967	74660067	3335269	0	+	0.58	(0.57,1]	chr7	310340	15	INTRON	INTRON	GTF2I	ENSG00000263001.8	ENST00000650807.1:ENST00000690345.1:ENST00000613513.1:ENST00000573035.6:ENST00000614986.4:ENST00000620879.4:ENST00000621734.4:ENST00000443166.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	32	2	2.66801	4.002045	5.33608	0.0169968	3.92497e-5	0.110899	0.00533644
chr9	123164924	123165022	4339432	0	-	0.520408	(0.515,0.57]	chr9	398906	35	INTRON	INTRON	STRBP	ENSG00000165209.19	ENST00000348403.10:ENST00000447404.6:ENST00000360998.3:ENST00000407982.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	54	2	2.78208	4.001745	5.22141	0.00209264	6.44141e-4	0.0424943	0.0231685
chr12	53622558	53622658	5328980	0	-	0.54	(0.515,0.57]	chr12	508405	212	INTRON	INTRON	ATF7	ENSG00000170653.19	ENST00000548446.6:ENST00000420353.7:ENST00000456903.8:ENST00000588232.5:ENST00000551480.2:ENST00000588078.5:ENST00000591397.1:ENST00000548118.6:ENST00000589726.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	54	2	2.57298	4.0015849999999995	5.43019	0.00506495	2.60422e-4	0.0646039	0.0148796
chr8	97780999	97781099	3809991	0	+	0.58	(0.57,1]	chr8	352908	45	INTRON	INTRON	LAPTM4B	ENSG00000104341.17	ENST00000445593.6:ENST00000619747.1:ENST00000521545.7:ENST00000517924.5	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	3.63124	4.0013000000000005	4.37136	0.00345135	2.87208e-4	0.0517761	0.0150568
chr3	196502172	196502272	1900007	0	-	0.47	(0.44,0.476]	chr3	190261	131	INTRON	INTRON	RNF168	ENSG00000163961.4	ENST00000318037.3:ENST00000437070.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	106	2	1.82337	4.001195	6.17902	0.0063815	1.95288e-5	0.0725747	0.00358497
chr16	14931475	14931575	6304897	0	+	0.5	(0.476,0.515]	chr16	603177	4	SS5_PROX	SS5_PROX:INTRON	PKD1P3:NPIPA1	ENSG00000183458.14:ENSG00000183426.17	ENST00000534164.6:ENST00000472413.5:ENST00000541836.5	protein_coding	processed_transcript	protein_coding:transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	1	47	2	2.7646	4.001145	5.23769	0.0162075	5.17244e-4	0.101453	0.0203753
chr7	17926706	17926806	3496429	0	-	0.51	(0.476,0.515]	chr7	326520	190	INTRON	INTRON	SNX13	ENSG00000071189.21	ENST00000428135.7:ENST00000611725.4:ENST00000409076.6:ENST00000444712.5:ENST00000482558.5:ENST00000409604.1:ENST00000475800.5:ENST00000474067.5:ENST00000471744.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	47	2	2.9435	4.000985	5.05847	0.00929849	0.00108081	0.0817766	0.0300133
chr4	48768879	48768979	2139510	0	-	0.51	(0.476,0.515]	chr4	211018	410	INTRON	INTRON	FRYL	ENSG00000075539.15	ENST00000358350.9:ENST00000503238.6:ENST00000507711.5:ENST00000502520.5:ENST00000505437.5:ENST00000514783.5:ENST00000509886.5:ENST00000515684.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	73	2	2.69104	4.0008099999999995	5.31058	9.94264e-4	9.15544e-4	0.0290397	0.0278396
chr10	110898088	110898183	4521377	0	+	0.221053	[0,0.28]	chr10	417186	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	PDCD4	ENSG00000150593.18	ENST00000393104.6:ENST00000280154.12:ENST00000462577.5:ENST00000498367.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	125	2	1.8602	4.0006	6.141	0.0100208	3.6661e-4	0.0880342	0.0177832
chr7	74517638	74517738	3334298	0	+	0.58	(0.57,1]	chr7	310198	1	SS3_PROX	SS3_PROX:INTRON	GTF2IRD1	ENSG00000006704.11	ENST00000265755.7:ENST00000424337.7:ENST00000455841.6:ENST00000476977.5:ENST00000489094.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	31	2	2.79889	4.00052	5.20215	0.0110274	8.28896e-5	0.0927187	0.00812487
chr4	126993	127093	1905669	0	+	0.52	(0.515,0.57]	chr4	191021	13	INTRON	INTRON	ZNF718	ENSG00000250312.8	ENST00000642529.1:ENST00000510175.6:ENST00000609714.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	45	2	3.40388	4.00009	4.5963	0.00370287	0.00142538	0.0561162	0.0340865
chr1	212815451	212815549	309821	0	+	0.408163	(0.378,0.408]	chr1	35777	4	UTR3	UTR3:EXON_MRNA	TATDN3	ENSG00000203705.11	ENST00000532324.5:ENST00000366973.8:ENST00000531963.5:ENST00000366974.9:ENST00000525574.5:ENST00000527693.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	80	2	2.33619	3.999845	5.6635	0.00607113	7.77533e-5	0.0676501	0.00735438
chr17	49711955	49712055	6793622	0	-	0.48	(0.476,0.515]	chr17	670374	4	SS3_PROX	SS3_PROX:INTRON	FAM117A	ENSG00000121104.8	ENST00000240364.7:ENST00000513602.5:ENST00000503573.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	71	2	2.3346	3.999825	5.66505	0.00494807	2.08835e-4	0.0646039	0.0131276
chr15	90232916	90233010	6258299	0	-	0.414894	(0.408,0.44]	chr15	597220	6	EXON_MRNA	EXON_MRNA:SS3_PROX:SS5_PROX:INTRON	CIB1	ENSG00000185043.13	ENST00000328649.11:ENST00000695870.1:ENST00000612800.1:ENST00000650306.1:ENST00000695872.1:ENST00000695873.1:ENST00000695874.1:ENST00000695875.1:ENST00000695876.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	178	2	3.29944	3.99974	4.70004	9.30956e-6	2.68333e-6	0.0022021	0.00115663
chr7	848943	849019	3268807	0	+	0.421053	(0.408,0.44]	chr7	303586	4	SS5_PROX	SS5_PROX:INTRON	SUN1	ENSG00000164828.18	ENST00000452783.6:ENST00000389574.7:ENST00000401592.6:ENST00000413171.6:ENST00000405266.5:ENST00000340926.7:ENST00000425407.6:ENST00000450881.5:ENST00000419312.5:ENST00000429178.5:ENST00000433212.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	179	2	3.14686	3.99967	4.85248	2.53705e-5	1.04691e-6	0.00394505	6.32938e-4
chr11	66654469	66654569	4811195	0	+	0.4	(0.378,0.408]	chr11	447918	22	INTRON	INTRON	RBM4	ENSG00000173933.21	ENST00000396053.9	protein_coding	protein_coding	protein_coding	protein_coding	2	68	2	2.76893	3.99952	5.23011	0.00316735	5.72873e-4	0.0503085	0.0217398
chr2	30577561	30577661	728130	0	+	0.29	(0.28,0.32]	chr2	84017	90	INTRON	INTRON	LCLAT1	ENSG00000172954.14	ENST00000319406.8:ENST00000379509.8:ENST00000491680.6:ENST00000309052.8:ENST00000478015.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	52	2	2.60656	3.999455	5.39235	0.0256827	0.0024844	0.133676	0.0446195
chr14	58261718	58261817	5731078	0	+	0.444444	(0.44,0.476]	chr14	544106	3	INTRON	INTRON	PSMA3	ENSG00000100567.13	ENST00000216455.9:ENST00000554812.5:ENST00000557087.5:ENST00000555931.5:ENST00000412908.6:ENST00000555743.1:ENST00000557508.5:ENST00000553677.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	59	2	2.59888	3.99944	5.4	0.00487719	7.02611e-4	0.0640618	0.024224
chr1	35409346	35409444	69732	0	+	0.367347	(0.35,0.378]	chr1	8862	8	INTRON	INTRON	ZMYM4	ENSG00000146463.12	ENST00000314607.11:ENST00000457946.1	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.80129	3.999195	4.1971	0.0504034	0.0367539	0.17488	0.138959
chr1	121211110	121211210	206327	0	+	0.37	(0.35,0.378]	chr1	22771	232	INTRON	INTRON	SRGAP2C	ENSG00000171943.12	ENST00000367123.8:ENST00000304465.7	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.80129	3.999195	4.1971	0.0504034	0.0367539	0.17488	0.138959
chr1	229334725	229334824	652531	0	-	0.353535	(0.35,0.378]	chr1	77248	68	INTRON	INTRON	CCSAP	ENSG00000154429.11	ENST00000366687.5:ENST00000284617.7:ENST00000366686.1:ENST00000483092.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	22	2	3.80129	3.999195	4.1971	0.0504034	0.0367539	0.17488	0.138959
chr11	116780808	116780902	5044915	0	-	0.361702	(0.35,0.378]	chr11	475472	6	INTRON	INTRON	ZPR1	ENSG00000109917.11	ENST00000227322.8:ENST00000444935.5:ENST00000429220.5	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.80129	3.999195	4.1971	0.0504034	0.0367539	0.17488	0.138959
chr12	71869713	71869811	5169496	0	+	0.357143	(0.35,0.378]	chr12	489712	4	INTRON	INTRON	TBC1D15	ENSG00000121749.16	ENST00000482439.6:ENST00000550746.5:ENST00000485960.7:ENST00000462788.6:ENST00000319106.12:ENST00000491063.5:ENST00000472611.6:ENST00000549402.5:ENST00000474468.5:ENST00000498482.5:ENST00000468049.2:ENST00000546932.5:ENST00000460818.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	22	2	3.80129	3.999195	4.1971	0.0504034	0.0367539	0.17488	0.138959
chr17	20237046	20237145	6574087	0	+	0.373737	(0.35,0.378]	chr17	639147	2	UTR3	UTR3:EXON_MRNA:INTRON	SPECC1:ENSG00000263494	ENSG00000128487.19:ENSG00000263494.1	ENST00000677148.1:ENST00000679048.1:ENST00000678019.1:ENST00000678315.1:ENST00000678321.1:ENST00000676570.1:ENST00000678651.1:ENST00000679049.1:ENST00000467722.3:ENST00000583528.6:ENST00000680019.1:ENST00000395527.9:ENST00000681593.1:ENST00000680830.1:ENST00000680124.1:ENST00000679255.1:ENST00000681202.1:ENST00000677914.1:ENST00000680374.1:ENST00000681564.1:ENST00000681116.1:ENST00000681875.1:ENST00000680604.1:ENST00000680572.1:ENST00000679058.1:ENST00000395529.7:ENST00000261503.9:ENST00000680740.1:ENST00000579688.2:ENST00000395530.6:ENST00000581399.6:ENST00000679819.1:ENST00000681545.1:ENST00000680373.1:ENST00000679801.1:ENST00000681731.1:ENST00000679740.1:ENST00000395522.6:ENST00000395525.7:ENST00000580225.1:ENST00000582226.5:ENST00000584527.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:nonsense_mediated_decay:lncRNA:processed_transcript	0	22	2	3.80129	3.999195	4.1971	0.0504034	0.0367539	0.17488	0.138959
chr19	19284391	19284491	7154332	0	-	0.36	(0.35,0.378]	chr19	723229	30	INTRON	INTRON	SUGP1	ENSG00000105705.16	ENST00000589144.5:ENST00000247001.10:ENST00000588731.6:ENST00000591007.6:ENST00000587119.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	22	2	3.80129	3.999195	4.1971	0.0504034	0.0367539	0.17488	0.138959
chr19	19453912	19454012	7035830	0	+	0.36	(0.35,0.378]	chr19	701448	173	INTRON	INTRON	GATAD2A	ENSG00000167491.18	ENST00000494516.6:ENST00000360315.7:ENST00000609040.5:ENST00000417582.6:ENST00000683918.1:ENST00000432704.5:ENST00000404158.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	22	2	3.80129	3.999195	4.1971	0.0504034	0.0367539	0.17488	0.138959
chr2	96630419	96630517	1181115	0	-	0.357143	(0.35,0.378]	chr2	126509	14	INTRON	INTRON	KANSL3	ENSG00000114982.19	ENST00000354204.10:ENST00000431828.6:ENST00000487070.5:ENST00000447759.5:ENST00000420155.5:ENST00000670907.1:ENST00000666923.1:ENST00000597150.5:ENST00000444759.5:ENST00000452268.5:ENST00000425656.5:ENST00000448075.1:ENST00000451819.5:ENST00000416138.1:ENST00000418735.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	22	2	3.80129	3.999195	4.1971	0.0504034	0.0367539	0.17488	0.138959
chr2	112565295	112565393	851845	0	+	0.357143	(0.35,0.378]	chr2	95505	4	INTRON	INTRON	POLR1B	ENSG00000125630.16	ENST00000537335.5:ENST00000541869.5:ENST00000333990.10:ENST00000409894.7:ENST00000448770.5:ENST00000263331.10:ENST00000417433.6:ENST00000484574.1:ENST00000458012.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	22	2	3.80129	3.999195	4.1971	0.0504034	0.0367539	0.17488	0.138959
chr4	51912696	51912789	1959271	0	+	0.365591	(0.35,0.378]	chr4	196371	12	INTRON	INTRON	DCUN1D4	ENSG00000109184.15	ENST00000509376.5:ENST00000381441.7:ENST00000334635.10:ENST00000507741.5:ENST00000477560.5:ENST00000451288.6:ENST00000507659.5:ENST00000505634.5:ENST00000510808.1:ENST00000512199.5:ENST00000508257.5:ENST00000510518.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	22	2	3.80129	3.999195	4.1971	0.0504034	0.0367539	0.17488	0.138959
chr6	14934033	14934133	3062269	0	-	0.36	(0.35,0.378]	chr6	284639	602	INTRON	INTRON	ENSG00000234261	ENSG00000234261.5	ENST00000629853.2:ENST00000653525.1	lncRNA	lncRNA	lncRNA	lncRNA	0	22	2	3.80129	3.999195	4.1971	0.0504034	0.0367539	0.17488	0.138959
chr6	15477512	15477612	2825266	0	+	0.37	(0.35,0.378]	chr6	265218	84	INTRON	INTRON	JARID2	ENSG00000008083.14	ENST00000341776.7:ENST00000397311.4	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.80129	3.999195	4.1971	0.0504034	0.0367539	0.17488	0.138959
chr7	149244216	149244315	3445695	0	+	0.353535	(0.35,0.378]	chr7	321412	38	INTRON	INTRON	ZNF212	ENSG00000170260.9	ENST00000335870.7:ENST00000486371.1:ENST00000462724.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	22	2	3.80129	3.999195	4.1971	0.0504034	0.0367539	0.17488	0.138959
chr8	105495717	105495817	3839019	0	+	0.36	(0.35,0.378]	chr8	354063	441	INTRON	INTRON	ZFPM2	ENSG00000169946.14	ENST00000407775.7:ENST00000520492.5:ENST00000520027.5:ENST00000524235.5:ENST00000511341.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	22	2	3.80129	3.999195	4.1971	0.0504034	0.0367539	0.17488	0.138959
chr8	31093092	31093191	3728543	0	+	0.444444	(0.44,0.476]	chr8	346610	8	INTRON	INTRON	WRN	ENSG00000165392.11	ENST00000650667.1:ENST00000298139.7:ENST00000521620.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	64	2	2.24189	3.9991900000000005	5.75649	0.0193405	4.17314e-5	0.108861	0.00523306
chr6	107951786	107951886	3182783	0	-	0.54	(0.515,0.57]	chr6	296463	219	INTRON	INTRON	SEC63	ENSG00000025796.14	ENST00000369002.9:ENST00000429168.1:ENST00000484803.5:ENST00000446496.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	43	2	2.68833	3.9987700000000004	5.30921	0.0184931	1.98811e-4	0.108861	0.0122787
chr17	3823398	3823496	6707972	0	-	0.336735	(0.32,0.35]	chr17	657001	1	SS5_PROX	SS5_PROX:INTRON	NCBP3	ENSG00000074356.17	ENST00000389005.6:ENST00000574911.5:ENST00000575815.5:ENST00000577169.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	49	2	2.71269	3.998595	5.2845	0.0181461	0.00240071	0.114853	0.0440612
chr1	196673460	196673559	286204	0	+	0.525253	(0.515,0.57]	chr1	32898	4	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CFH:ENSG00000289697	ENSG00000000971.17:ENSG00000289697.1	ENST00000359637.3:ENST00000695968.1:ENST00000696032.1:ENST00000695970.1:ENST00000695971.1:ENST00000695972.1:ENST00000470918.2:ENST00000695969.1:ENST00000695973.1:ENST00000695974.1:ENST00000696033.1:ENST00000695975.1:ENST00000695976.1:ENST00000695981.1:ENST00000695980.1:ENST00000695978.1:ENST00000695979.1:ENST00000696026.1:ENST00000696027.1:ENST00000696028.1:ENST00000696029.1:ENST00000695983.1:ENST00000696025.1:ENST00000696024.1:ENST00000696023.1:ENST00000696019.1:ENST00000696020.1:ENST00000696021.1:ENST00000696022.1:ENST00000696018.1:ENST00000695984.1:ENST00000367429.9:ENST00000696030.1:ENST00000630130.2:ENST00000696031.1:ENST00000496761.2:ENST00000695986.1:ENST00000695987.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	41	2	3.31388	3.99849	4.6831	0.00471288	0.00174704	0.0600108	0.0386026
chr9	109050182	109050282	4311893	0	-	0.35	(0.32,0.35]	chr9	396317	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	TMEM245	ENSG00000106771.13	ENST00000374586.8:ENST00000413712.6:ENST00000491854.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	55	2	3.20216	3.99849	4.79482	0.00480708	0.00447781	0.0610799	0.0602209
chr1	66951412	66951511	139707	0	+	0.444444	(0.44,0.476]	chr1	15662	33	INTRON	INTRON	MIER1	ENSG00000198160.15	ENST00000355977.10:ENST00000371018.7:ENST00000357692.6:ENST00000371016.5:ENST00000371014.5:ENST00000401041.6:ENST00000355356.3:ENST00000401042.7:ENST00000479067.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	45	2	3.3111	3.9983700000000004	4.68564	0.00816201	0.0020006	0.0766625	0.0412555
chr1	213155467	213155567	311749	0	+	0.46	(0.44,0.476]	chr1	35945	252	INTRON	INTRON	RPS6KC1	ENSG00000136643.12	ENST00000615329.4:ENST00000543354.5:ENST00000614059.4:ENST00000543470.5:ENST00000366960.8:ENST00000366959.4:ENST00000490299.5:ENST00000468069.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	45	2	3.3111	3.9983700000000004	4.68564	0.00816201	0.0020006	0.0766625	0.0412555
chr1	212888781	212888869	310153	0	+	0.465909	(0.44,0.476]	chr1	35825	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	FLVCR1	ENSG00000162769.13	ENST00000366971.9:ENST00000419102.1:ENST00000483790.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	175	2	3.62109	3.9982499999999996	4.37541	5.11289e-5	1.7867e-7	0.0062158	1.95408e-4
chr3	196501073	196501173	1899996	0	-	0.4	(0.378,0.408]	chr3	190261	120	INTRON	INTRON	RNF168	ENSG00000163961.4	ENST00000318037.3:ENST00000437070.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	63	2	3.05389	3.998195	4.9425	0.00452675	6.75567e-4	0.0595107	0.0236067
chr10	124757934	124758033	4712202	0	-	0.40404	(0.378,0.408]	chr10	434793	18	UTR3	UTR3:EXON_MRNA:INTRON	EEF1AKMT2	ENSG00000203791.15	ENST00000495711.2:ENST00000652548.1:ENST00000466270.5:ENST00000368836.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	45	2	2.9917	3.998145	5.00459	0.0068789	0.00371142	0.0749442	0.0535094
chr7	20208631	20208730	3497464	0	-	0.383838	(0.378,0.408]	chr7	326599	96	INTRON	INTRON	MACC1	ENSG00000183742.13	ENST00000400331.10:ENST00000332878.8:ENST00000471019.1:ENST00000483317.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	45	2	2.9917	3.998145	5.00459	0.0068789	0.00371142	0.0749442	0.0535094
chr2	61358364	61358464	1129419	0	-	0.26	[0,0.28]	chr2	121448	73	INTRON	INTRON	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000453133.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	55	2	2.69187	3.998055	5.30424	0.0221271	0.00584781	0.123903	0.0667594
chr1	174179046	174179146	257299	0	+	0.41	(0.408,0.44]	chr1	30720	190	INTRON	INTRON	RABGAP1L	ENSG00000152061.24	ENST00000357444.10:ENST00000251507.8:ENST00000681986.1:ENST00000635248.1:ENST00000457696.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	64	2	2.36185	3.9978949999999998	5.63394	0.0133164	7.78928e-5	0.094512	0.00735438
chr20	32375648	32375748	7255999	0	+	0.41	(0.408,0.44]	chr20	737076	32	INTRON	INTRON	ASXL1	ENSG00000171456.21	ENST00000651418.1:ENST00000375687.10:ENST00000613218.4:ENST00000644587.1:ENST00000620121.4:ENST00000646985.1:ENST00000643168.1:ENST00000306058.9:ENST00000645688.1:ENST00000470145.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	64	2	2.45003	3.99782	5.54561	0.00990006	1.20601e-4	0.0838372	0.00938389
chr19	17063179	17063279	7150952	0	-	0.52	(0.515,0.57]	chr19	722529	4	SS3_PROX	SS3_PROX:INTRON	HAUS8	ENSG00000131351.15	ENST00000253669.10:ENST00000448593.6:ENST00000593360.1:ENST00000598517.5:ENST00000601564.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	43	2	3.58035	3.997665	4.41498	0.0106866	5.21239e-4	0.0861859	0.0204523
chr12	56638684	56638764	5335731	0	-	0.5	(0.476,0.515]	chr12	510109	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ATP5F1B	ENSG00000110955.9	ENST00000262030.8:ENST00000548474.2:ENST00000551182.1:ENST00000547808.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	130	2	3.49381	3.997475	4.50114	6.39656e-5	7.6219e-6	0.00661396	0.00207666
chr1	47376745	47376844	98012	0	+	0.353535	(0.35,0.378]	chr1	13170	1	UTR3	UTR3:EXON_MRNA	CMPK1	ENSG00000162368.14	ENST00000371873.10:ENST00000371871.8:ENST00000450808.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	62	2	2.59046	3.997455	5.40445	0.00528327	0.00114224	0.0656295	0.0307966
chr7	105037725	105037825	3374853	0	+	0.28	[0,0.28]	chr7	315855	2	SS3_PROX	SS3_PROX:INTRON	KMT2E	ENSG00000005483.22	ENST00000622386.2:ENST00000257745.9:ENST00000334884.9:ENST00000311117.8:ENST00000478990.5:ENST00000480368.5:ENST00000495267.5:ENST00000476671.5:ENST00000667857.1:ENST00000474203.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	97	2	2.78378	3.99716	5.21054	0.00758653	0.00105071	0.0749063	0.0298884
chr2	28753674	28753774	724668	0	+	0.32	(0.28,0.32]	chr2	83720	11	INTRON	INTRON	PPP1CB	ENSG00000213639.10	ENST00000455580.5:ENST00000420282.5:ENST00000441461.5:ENST00000427786.1:ENST00000358506.6:ENST00000296122.10:ENST00000395366.3:ENST00000464273.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	51	2	3.1268	3.9970549999999996	4.86731	0.0116253	0.00508956	0.0889104	0.0646039
chr7	75065517	75065609	3557165	0	-	0.423913	(0.408,0.44]	chr7	331248	5	INTRON	INTRON	RCC1L	ENSG00000274523.5	ENST00000614461.4:ENST00000610322.5:ENST00000616051.1:ENST00000618035.4:ENST00000615250.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	59	2	2.64829	3.996885	5.34548	0.00400062	9.40657e-4	0.057767	0.0280776
chr22	49651826	49651926	7602606	0	-	0.49	(0.476,0.515]	chr22	778594	244	INTRON	INTRON	MIR3667HG	ENSG00000188511.13	ENST00000414287.5:ENST00000416411.1:ENST00000689875.1:ENST00000400023.5:ENST00000405854.5	lncRNA	lncRNA	lncRNA	lncRNA	2	63	2	2.49941	3.996875	5.49434	0.00811651	1.62782e-4	0.0766625	0.0109774
chr1	246899050	246899150	681624	0	-	0.42	(0.408,0.44]	chr1	79988	2	SS5_PROX	SS5_PROX:INTRON	AHCTF1	ENSG00000153207.16	ENST00000648844.2:ENST00000326225.3:ENST00000366508.5:ENST00000470300.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	77	2	2.15938	3.99651	5.83364	0.011260300000000001	2.74563e-5	0.0884004	0.00414215
chr15	84676925	84677025	6251627	0	-	0.48	(0.476,0.515]	chr15	596648	32	INTRON	INTRON	SEC11A	ENSG00000140612.14	ENST00000559729.5:ENST00000268220.12:ENST00000560266.5:ENST00000558134.5:ENST00000558217.5:ENST00000455959.7:ENST00000560409.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	45	2	3.29939	3.996295	4.6932	0.00753088	0.00211868	0.074841	0.0425644
chr6	17915755	17915855	3067833	0	-	0.48	(0.476,0.515]	chr6	285100	172	INTRON	INTRON	KIF13A	ENSG00000137177.20	ENST00000378814.9:ENST00000259711.11:ENST00000378826.6:ENST00000378843.6:ENST00000636847.1:ENST00000507576.1:ENST00000505588.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	47	2	2.69967	3.9962400000000002	5.29281	0.0195838	4.07635e-4	0.109483	0.0181306
chr14	101886722	101886820	5819767	0	+	0.489796	(0.476,0.515]	chr14	551895	28	INTRON	INTRON	PPP2R5C	ENSG00000078304.20	ENST00000694906.1:ENST00000422945.6:ENST00000328724.9:ENST00000350249.7:ENST00000557621.5:ENST00000334743.9:ENST00000445439.7:ENST00000557095.5:ENST00000554137.5:ENST00000556218.5:ENST00000557534.1:ENST00000557716.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	135	2	3.87861	3.996235	4.11386	4.0075e-5	1.10139e-5	0.00513517	0.00262548
chr12	50113303	50113403	5135714	0	+	0.54	(0.515,0.57]	chr12	484312	4	SS5_PROX	SS5_PROX:INTRON	COX14:ENSG00000272368	ENSG00000178449.9:ENSG00000272368.2	ENST00000317943.6:ENST00000548468.2:ENST00000550654.1:ENST00000550487.6:ENST00000548985.1:ENST00000552815.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	1	44	2	3.30665	3.9961649999999995	4.68568	0.00270027	0.00213226	0.0479115	0.041756
chr5	37347210	37347310	2602521	0	-	0.4	(0.378,0.408]	chr5	247481	42	INTRON	INTRON	NUP155	ENSG00000113569.16	ENST00000231498.8:ENST00000381843.6:ENST00000513532.1:ENST00000507233.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	46	2	2.71183	3.99608	5.28033	0.0170789	0.00143651	0.110899	0.0340925
chr2	95860872	95860971	1178370	0	-	0.282828	(0.28,0.32]	chr2	125761	4	INTRON	INTRON	ANKRD36C	ENSG00000174501.15	ENST00000295246.7:ENST00000456556.5:ENST00000531153.5:ENST00000534304.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	68	2	2.51426	3.996025	5.47779	0.00781326	0.00187048	0.0788246	0.0390476
chr18	26019767	26019865	6959002	0	-	0.265306	[0,0.28]	chr18	688404	10	INTRON	INTRON	SS18	ENSG00000141380.14	ENST00000415083.7:ENST00000542420.6:ENST00000579640.5:ENST00000269138.9:ENST00000269137.11:ENST00000585121.5:ENST00000580958.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	60	2	2.64309	3.99594	5.34879	0.0308646	0.00157139	0.13151	0.0365659
chr1	246482134	246482234	680471	0	-	0.43	(0.408,0.44]	chr1	79777	649	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000490107.6:ENST00000462422.5:ENST00000403792.7:ENST00000470863.1:ENST00000455277.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	51	2	3.37162	3.995855	4.62009	0.00504155	0.00208674	0.0646039	0.0411801
chr12	42211370	42211466	5313343	0	-	0.447917	(0.44,0.476]	chr12	505334	3	INTRON	INTRON	YAF2	ENSG00000015153.15	ENST00000534854.7:ENST00000327791.8:ENST00000380790.4:ENST00000552109.5:ENST00000547622.5:ENST00000547351.5:ENST00000551268.5:ENST00000548661.5:ENST00000546726.5:ENST00000547724.1:ENST00000552928.5:ENST00000548917.1:ENST00000547254.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	71	2	2.22103	3.9958199999999997	5.77061	0.00776319	1.44264e-4	0.0787356	0.0109794
chr7	105509143	105509242	3604732	0	-	0.383838	(0.378,0.408]	chr7	336276	2	INTRON	INTRON	PUS7	ENSG00000091127.14	ENST00000481939.5:ENST00000469408.6:ENST00000356362.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	49	2	3.00568	3.995775	4.98587	0.00811866	0.00152268	0.0766625	0.0360297
chrX	44942283	44942383	7649293	0	+	0.43	(0.408,0.44]	chrX	782726	679	INTRON	INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000675440.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000621147.5:ENST00000475233.1:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	64	2	2.49218	3.9957599999999998	5.49934	0.00855168	1.5076e-4	0.0780217	0.0106137
chr20	49145400	49145500	7351943	0	-	0.43	(0.408,0.44]	chr20	749652	91	INTRON	INTRON	STAU1	ENSG00000124214.21	ENST00000371856.7:ENST00000371828.7:ENST00000340954.11:ENST00000347458.9:ENST00000360426.8:ENST00000371792.5:ENST00000371802.5:ENST00000437404.2	protein_coding	protein_coding	protein_coding	protein_coding	1	45	2	3.31257	3.995755	4.67894	0.0087648	0.00198621	0.0788605	0.0411469
chr5	146207215	146207315	2514150	0	+	0.48	(0.476,0.515]	chr5	240152	30	INTRON	INTRON	ENSG00000275740:RBM27	ENSG00000275740.1:ENSG00000091009.8	ENST00000506502.2:ENST00000265271.7	protein_coding	protein_coding	protein_coding	protein_coding	1	45	2	2.73205	3.99575	5.25945	0.0159328	0.00111445	0.109464	0.0306328
chr13	95099171	95099270	5637831	0	-	0.333333	(0.32,0.35]	chr13	537050	26	INTRON	INTRON	ABCC4	ENSG00000125257.16	ENST00000645237.2:ENST00000643051.1:ENST00000643842.1:ENST00000646439.1:ENST00000644880.1:ENST00000643816.1:ENST00000536256.3:ENST00000643556.1:ENST00000629385.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	53	2	2.51061	3.99572	5.48083	0.0364463	3.35843e-4	0.138959	0.0162819
chr12	132827807	132827902	5450216	0	-	0.589474	(0.57,1]	chr12	522126	1	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GOLGA3:CHFR	ENSG00000090615.16:ENSG00000072609.18	ENST00000204726.9:ENST00000450791.8:ENST00000688114.1:ENST00000691696.1:ENST00000691636.1:ENST00000690897.1:ENST00000456883.7:ENST00000545875.4:ENST00000688251.1:ENST00000686751.1:ENST00000685580.1:ENST00000687165.1:ENST00000692384.1:ENST00000685120.1:ENST00000689813.1:ENST00000693112.1:ENST00000685450.1:ENST00000534967.2:ENST00000537317.2:ENST00000541341.5:ENST00000692289.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	39	2	3.01672	3.9956499999999995	4.97458	5.94133e-4	2.67728e-4	0.0221865	0.0149989
chr11	118768951	118769051	5046145	0	-	0.38	(0.378,0.408]	chr11	475786	2	INTRON	INTRON	DDX6	ENSG00000110367.14	ENST00000534980.7:ENST00000620157.4:ENST00000526070.2:ENST00000525082.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	45	2	3.1136	3.99561	4.87762	0.00553849	0.00443339	0.0648867	0.061054
chr1	50498795	50498895	447624	0	-	0.42	(0.408,0.44]	chr1	54177	66	INTRON	INTRON	FAF1	ENSG00000185104.21	ENST00000396153.7:ENST00000494400.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	77	2	2.19524	3.995545	5.79585	0.00990486	3.36399e-5	0.0838372	0.00463632
chr20	50912474	50912573	7355688	0	-	0.383838	(0.378,0.408]	chr20	750099	28	INTRON	INTRON	ADNP	ENSG00000101126.18	ENST00000621696.5:ENST00000673732.1:ENST00000396029.8:ENST00000644386.1:ENST00000396032.8:ENST00000645081.1:ENST00000642364.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	134	2	3.83604	3.9954349999999996	4.15483	6.54278e-5	8.26408e-6	0.00715707	0.00207261
chr1	149468940	149469040	217992	0	+	0.38	(0.378,0.408]	chr1	24127	49	UTR3	UTR3:EXON_MRNA	NOTCH2NLC	ENSG00000286219.2	ENST00000650865.2	protein_coding	protein_coding	protein_coding	protein_coding	2	61	2	2.86955	3.9954149999999995	5.12128	0.00251746	0.00159247	0.0446195	0.0367961
chr16	87860304	87860404	6539005	0	-	0.39	(0.378,0.408]	chr16	633643	81	INTRON	INTRON	SLC7A5	ENSG00000103257.9	ENST00000261622.5:ENST00000565644.5	protein_coding	protein_coding	protein_coding	protein_coding	2	61	2	2.86955	3.9954149999999995	5.12128	0.00251746	0.00159247	0.0446195	0.0367961
chr20	3901147	3901247	7227013	0	+	0.49	(0.476,0.515]	chr20	734478	2	SS3_PROX	SS3_PROX:INTRON	PANK2	ENSG00000125779.24	ENST00000497424.5:ENST00000316562.9:ENST00000495692.5:ENST00000610179.7:ENST00000643504.2:ENST00000336066.8:ENST00000646394.1:ENST00000621507.1:ENST00000471830.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	59	2	2.68023	3.995405	5.31058	0.00353671	9.15544e-4	0.0546236	0.0278396
chr1	110351980	110352080	182470	0	+	0.39	(0.378,0.408]	chr1	20251	37	INTRON	INTRON	LAMTOR5-AS1	ENSG00000224699.10	ENST00000626572.2	lncRNA	lncRNA	lncRNA	lncRNA	1	45	2	2.92665	3.9953849999999997	5.06412	0.0086017	0.0030522	0.083729	0.0493883
chr4	112619396	112619494	2228722	0	-	0.387755	(0.378,0.408]	chr4	218198	21	CDS	CDS:UTR3:EXON_MRNA	ZGRF1	ENSG00000138658.16	ENST00000445203.6:ENST00000505019.6:ENST00000473015.5:ENST00000309071.9:ENST00000264370.9:ENST00000514770.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	45	2	2.92665	3.9953849999999997	5.06412	0.0086017	0.0030522	0.083729	0.0493883
chr4	121696080	121696180	2233535	0	-	0.39	(0.378,0.408]	chr4	218756	1	SS5_PROX	SS5_PROX:INTRON	ANXA5	ENSG00000164111.15	ENST00000296511.10:ENST00000501272.6:ENST00000506395.5:ENST00000515017.5:ENST00000511552.5:ENST00000509016.5:ENST00000513428.5:ENST00000513523.1:ENST00000513728.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	45	2	2.92665	3.9953849999999997	5.06412	0.0086017	0.0030522	0.083729	0.0493883
chr20	35401371	35401471	7335103	0	-	0.35	(0.32,0.35]	chr20	747197	68	INTRON	INTRON	UQCC1	ENSG00000101019.22	ENST00000374380.6:ENST00000374394.7:ENST00000374384.6:ENST00000359226.6:ENST00000349714.9:ENST00000457259.5:ENST00000374385.10:ENST00000453855.5:ENST00000424405.5:ENST00000443429.5:ENST00000438533.5:ENST00000397554.5:ENST00000491125.5:ENST00000491040.5:ENST00000397553.6:ENST00000495752.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	53	2	2.99125	3.995235	4.99922	0.00958447	0.00223907	0.0820838	0.0435144
chr9	94439707	94439804	4162818	0	+	0.257732	[0,0.28]	chr9	379503	8	INTRON	INTRON	MFSD14B	ENSG00000148110.17	ENST00000375344.8	protein_coding	protein_coding	protein_coding	protein_coding	1	60	2	2.59548	3.995215	5.39495	0.0346067	0.00133175	0.136649	0.0335129
chr3	152390171	152390271	1536203	0	+	0.24	[0,0.28]	chr3	160003	546	INTRON	INTRON	MBNL1	ENSG00000152601.18	ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000495875.6:ENST00000324210.10:ENST00000493459.5:ENST00000459747.1:ENST00000460591.5:ENST00000545754.5:ENST00000357472.7:ENST00000324196.9:ENST00000498502.5:ENST00000463374.5:ENST00000485910.5:ENST00000465907.6:ENST00000492948.5:ENST00000485509.5:ENST00000464596.5	protein_coding	protein_coding	protein_coding	protein_coding	1	60	2	2.68918	3.99514	5.3011	0.0275571	0.00185843	0.123904	0.039946
chr12	116099745	116099845	5423765	0	-	0.46	(0.44,0.476]	chr12	518251	26	INTRON	INTRON	MED13L	ENSG00000123066.9	ENST00000281928.9:ENST00000650226.1:ENST00000548743.2:ENST00000647567.1	protein_coding	protein_coding	protein_coding	protein_coding	3	132	2	3.17172	3.9950150000000004	4.81831	5.10693e-4	4.39265e-7	0.020816	3.47913e-4
chr1	26933560	26933660	52875	0	+	0.5	(0.476,0.515]	chr1	6762	90	INTRON	INTRON	NUDC	ENSG00000090273.14	ENST00000435827.6:ENST00000321265.10:ENST00000452707.1	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	3.97201	3.99489	4.01777	0.0411361	0.030904	0.1451	0.143385
chr1	40988032	40988093	83283	0	+	0.508197	(0.476,0.515]	chr1	10843	2	INTRON	INTRON	CTPS1	ENSG00000171793.17	ENST00000696107.1:ENST00000480420.6:ENST00000650070.2:ENST00000649864.1:ENST00000648914.1:ENST00000648020.2:ENST00000650634.2:ENST00000696108.1:ENST00000463285.7:ENST00000649124.2:ENST00000498694.2:ENST00000696070.1:ENST00000648801.1:ENST00000470271.6:ENST00000696109.1:ENST00000479480.6:ENST00000372616.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	21	2	3.97201	3.99489	4.01777	0.0411361	0.030904	0.1451	0.143385
chr1	149099789	149099886	547814	0	-	0.484536	(0.476,0.515]	chr1	64423	7	INTRON	INTRON	NBPF9	ENSG00000269713.8	ENST00000615421.4:ENST00000584027.9:ENST00000621645.4	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	3.97201	3.99489	4.01777	0.0411361	0.030904	0.1451	0.143385
chr10	7230625	7230724	4551121	0	-	0.494949	(0.476,0.515]	chr10	420200	23	INTRON	INTRON	SFMBT2	ENSG00000198879.13	ENST00000397167.6:ENST00000361972.8:ENST00000684547.1:ENST00000683762.1:ENST00000673876.1:ENST00000682896.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	21	2	3.97201	3.99489	4.01777	0.0411361	0.030904	0.1451	0.143385
chr10	86780003	86780103	4479631	0	+	0.5	(0.476,0.515]	chr10	412292	227	INTRON	INTRON	BMPR1A	ENSG00000107779.14	ENST00000638429.1:ENST00000372037.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	21	2	3.97201	3.99489	4.01777	0.0411361	0.030904	0.1451	0.143385
chr10	91940856	91940953	4488900	0	+	0.505155	(0.476,0.515]	chr10	413300	4	INTRON	INTRON	BTAF1	ENSG00000095564.15	ENST00000265990.12	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	3.97201	3.99489	4.01777	0.0411361	0.030904	0.1451	0.143385
chr11	48000006	48000106	4789413	0	+	0.5	(0.476,0.515]	chr11	443265	186	INTRON	INTRON	PTPRJ	ENSG00000149177.14	ENST00000418331.7:ENST00000440289.6:ENST00000527952.1:ENST00000534219.5	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	3.97201	3.99489	4.01777	0.0411361	0.030904	0.1451	0.143385
chr11	57816099	57816197	4793704	0	+	0.489796	(0.476,0.515]	chr11	443824	2	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ENSG00000288534:CTNND1	ENSG00000288534.1:ENSG00000198561.16	ENST00000673781.1:ENST00000673810.1:ENST00000674116.1:ENST00000674060.1:ENST00000524630.5:ENST00000529919.5:ENST00000682741.1:ENST00000358694.10:ENST00000361332.8:ENST00000361391.10:ENST00000361796.9:ENST00000415361.6:ENST00000426142.6:ENST00000428599.6:ENST00000525902.5:ENST00000526357.5:ENST00000526772.5:ENST00000527467.5:ENST00000528232.5:ENST00000528621.5:ENST00000529526.5:ENST00000529873.5:ENST00000529986.5:ENST00000530094.5:ENST00000530748.5:ENST00000531014.5:ENST00000532245.5:ENST00000532463.5:ENST00000532649.5:ENST00000532787.5:ENST00000532844.5:ENST00000533667.5:ENST00000534579.5:ENST00000399050.10:ENST00000526938.5:ENST00000531007.2:ENST00000674015.1:ENST00000673826.1:ENST00000673683.1:ENST00000674106.1:ENST00000681984.1:ENST00000683906.1:ENST00000673661.1:ENST00000682621.1:ENST00000683201.1:ENST00000682974.1:ENST00000684035.1:ENST00000683510.1:ENST00000683769.1:ENST00000530720.2:ENST00000684704.1:ENST00000525821.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	21	2	3.97201	3.99489	4.01777	0.0411361	0.030904	0.1451	0.143385
chr11	70343080	70343168	4821159	0	+	0.488636	(0.476,0.515]	chr11	449478	6	INTRON	INTRON	PPFIA1	ENSG00000131626.19	ENST00000253925.12:ENST00000389547.7:ENST00000532504.5:ENST00000648755.1:ENST00000644155.1:ENST00000526262.5:ENST00000530798.5:ENST00000526369.3:ENST00000526347.5:ENST00000530294.5:ENST00000526074.5:ENST00000528284.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	21	2	3.97201	3.99489	4.01777	0.0411361	0.030904	0.1451	0.143385
chr12	69562774	69562872	5165185	0	+	0.5	(0.476,0.515]	chr12	489175	1	INTRON	INTRON	FRS2	ENSG00000166225.9	ENST00000547219.5:ENST00000550316.5:ENST00000547414.5:ENST00000548154.5:ENST00000549921.6:ENST00000550389.5:ENST00000550937.5:ENST00000549092.5:ENST00000550169.5:ENST00000397997.6:ENST00000551325.1	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	3.97201	3.99489	4.01777	0.0411361	0.030904	0.1451	0.143385
chr13	52004187	52004287	5596843	0	-	0.51	(0.476,0.515]	chr13	534988	253	INTRON	INTRON	ATP7B	ENSG00000123191.16	ENST00000242839.10:ENST00000344297.9:ENST00000448424.7:ENST00000400370.8:ENST00000634844.1:ENST00000673772.1:ENST00000634308.1:ENST00000418097.7:ENST00000400366.6:ENST00000635406.1:ENST00000674078.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	21	2	3.97201	3.99489	4.01777	0.0411361	0.030904	0.1451	0.143385
chr15	57233256	57233356	6035275	0	+	0.49	(0.476,0.515]	chr15	574750	4	SS5_PROX	SS5_PROX:INTRON	TCF12	ENSG00000140262.18	ENST00000438423.6:ENST00000267811.9:ENST00000333725.10:ENST00000560190.5:ENST00000559609.5:ENST00000557843.5:ENST00000561346.5:ENST00000561235.5:ENST00000560764.5:ENST00000543579.5:ENST00000537840.5:ENST00000343827.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	21	2	3.97201	3.99489	4.01777	0.0411361	0.030904	0.1451	0.143385
chr16	16243661	16243761	6309850	0	+	0.48	(0.476,0.515]	chr16	603740	4	SS5_PROX	SS5_PROX:INTRON	NOMO3	ENSG00000103226.19	ENST00000676846.1:ENST00000399336.9:ENST00000677912.1:ENST00000677777.1:ENST00000678192.1:ENST00000678393.1:ENST00000678538.1:ENST00000679086.1:ENST00000574894.2:ENST00000678080.1:ENST00000677260.1:ENST00000676550.1:ENST00000263012.10:ENST00000575225.5:ENST00000677781.1:ENST00000677163.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	21	2	3.97201	3.99489	4.01777	0.0411361	0.030904	0.1451	0.143385
chr17	30786326	30786426	6590361	0	+	0.5	(0.476,0.515]	chr17	640897	2	SS3_PROX	SS3_PROX:INTRON	SUZ12P1	ENSG00000264538.7	ENST00000582329.1:ENST00000583950.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	21	2	3.97201	3.99489	4.01777	0.0411361	0.030904	0.1451	0.143385
chr18	56709999	56710098	6911962	0	+	0.484848	(0.476,0.515]	chr18	684297	132	INTRON	INTRON	WDR7	ENSG00000091157.15	ENST00000589935.1:ENST00000254442.8:ENST00000357574.7	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	3.97201	3.99489	4.01777	0.0411361	0.030904	0.1451	0.143385
chr19	51706907	51707005	7093968	0	+	0.5	(0.476,0.515]	chr19	711104	14	INTRON	INTRON	SPACA6	ENSG00000182310.15	ENST00000573896.1	protein_coding	processed_transcript	protein_coding	processed_transcript	0	21	2	3.97201	3.99489	4.01777	0.0411361	0.030904	0.1451	0.143385
chr19	56142386	56142486	7102208	0	+	0.49	(0.476,0.515]	chr19	712654	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ZNF444	ENSG00000167685.15	ENST00000587467.5:ENST00000588358.5:ENST00000587195.5:ENST00000337080.8:ENST00000586123.5:ENST00000587664.5:ENST00000592949.5:ENST00000593100.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	21	2	3.97201	3.99489	4.01777	0.0411361	0.030904	0.1451	0.143385
chr3	11335677	11335776	1365036	0	+	0.484848	(0.476,0.515]	chr3	143884	22	INTRON	INTRON	ATG7	ENSG00000197548.13	ENST00000693202.1:ENST00000435760.6:ENST00000685771.1:ENST00000354449.7:ENST00000354956.9:ENST00000446450.6:ENST00000424071.5:ENST00000434066.6:ENST00000478638.5:ENST00000461278.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	21	2	3.97201	3.99489	4.01777	0.0411361	0.030904	0.1451	0.143385
chr3	69037475	69037573	1734559	0	-	0.510204	(0.476,0.515]	chr3	176763	20	INTRON	INTRON	TMF1	ENSG00000144747.17	ENST00000398559.7:ENST00000646304.1:ENST00000646708.1:ENST00000488010.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	21	2	3.97201	3.99489	4.01777	0.0411361	0.030904	0.1451	0.143385
chr3	155875474	155875574	1537175	0	+	0.49	(0.476,0.515]	chr3	160082	42	INTRON	INTRON	GMPS	ENSG00000163655.16	ENST00000496455.7:ENST00000295920.7	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	3.97201	3.99489	4.01777	0.0411361	0.030904	0.1451	0.143385
chr5	37430829	37430928	2340906	0	+	0.484848	(0.476,0.515]	chr5	226227	339	INTRON	INTRON	WDR70	ENSG00000082068.9	ENST00000504564.1:ENST00000511906.5:ENST00000265107.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	21	2	3.97201	3.99489	4.01777	0.0411361	0.030904	0.1451	0.143385
chr6	4034927	4035026	2789834	0	+	0.494949	(0.476,0.515]	chr6	263487	18	INTRON	INTRON	PRPF4B	ENSG00000112739.17	ENST00000480058.5:ENST00000337659.11	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	21	2	3.97201	3.99489	4.01777	0.0411361	0.030904	0.1451	0.143385
chr6	158624007	158624107	3022248	0	+	0.48	(0.476,0.515]	chr6	281852	4	SS5_PROX	SS5_PROX:INTRON	TMEM181	ENSG00000146433.10	ENST00000367090.4:ENST00000684151.1	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	3.97201	3.99489	4.01777	0.0411361	0.030904	0.1451	0.143385
chr8	85218506	85218606	3980192	0	-	0.49	(0.476,0.515]	chr8	364733	4	SS5_PROX	SS5_PROX:INTRON	RBIS	ENSG00000176731.12	ENST00000619594.5:ENST00000614462.4:ENST00000612977.4:ENST00000545322.5:ENST00000612809.4:ENST00000615697.4:ENST00000523281.5:ENST00000523245.1:ENST00000321777.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	21	2	3.97201	3.99489	4.01777	0.0411361	0.030904	0.1451	0.143385
chr9	92090537	92090637	4286204	0	-	0.49	(0.476,0.515]	chr9	394050	92	INTRON	INTRON	SPTLC1	ENSG00000090054.16	ENST00000689261.1:ENST00000690095.1:ENST00000646534.1:ENST00000262554.7:ENST00000687427.1:ENST00000690139.1:ENST00000687972.1:ENST00000689401.1:ENST00000686600.1:ENST00000686799.1:ENST00000644140.1:ENST00000692458.1:ENST00000687817.1:ENST00000693147.1:ENST00000482632.6:ENST00000689423.1:ENST00000337841.4:ENST00000477888.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	21	2	3.97201	3.99489	4.01777	0.0411361	0.030904	0.1451	0.143385
chr9	131401748	131401847	4217046	0	+	0.494949	(0.476,0.515]	chr9	386720	71	INTRON	INTRON	PRRC2B	ENSG00000288701.1	ENST00000682525.1:ENST00000684596.1:ENST00000683519.1:ENST00000682501.1	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	3.97201	3.99489	4.01777	0.0411361	0.030904	0.1451	0.143385
chr16	21626013	21626113	6319211	0	+	0.47	(0.44,0.476]	chr16	604937	5	INTRON	INTRON	METTL9	ENSG00000197006.15	ENST00000567404.5:ENST00000396014.8:ENST00000358154.8:ENST00000568826.1	protein_coding	protein_coding	protein_coding	protein_coding	2	59	2	2.73781	3.9947999999999997	5.25179	0.00276493	0.00124521	0.04867	0.0322969
chr6	98934879	98934979	3165459	0	-	0.36	(0.35,0.378]	chr6	295223	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	FBXL4	ENSG00000112234.9	ENST00000369244.7:ENST00000229971.2	protein_coding	protein_coding	protein_coding	protein_coding	1	50	2	2.78212	3.9947749999999997	5.20743	0.0168532	7.78116e-4	0.103549	0.0256531
chr12	109578183	109578279	5223604	0	+	0.3125	(0.28,0.32]	chr12	494844	17	INTRON	INTRON	MVK	ENSG00000110921.14	ENST00000539335.5:ENST00000546277.5:ENST00000535044.1:ENST00000447878.6:ENST00000228510.8:ENST00000539696.5:ENST00000537237.5:ENST00000545774.5:ENST00000392727.7:ENST00000539575.4:ENST00000625889.2:ENST00000629016.2:ENST00000639206.1:ENST00000636996.1:ENST00000636529.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	56	2	2.45545	3.994735	5.53402	0.0438092	4.0843e-4	0.14901	0.0181306
chr20	21330280	21330380	7248411	0	+	0.3	(0.28,0.32]	chr20	735900	4	SS3_PROX	SS3_PROX:INTRON	XRN2	ENSG00000088930.8	ENST00000377191.5	protein_coding	protein_coding	protein_coding	protein_coding	1	56	2	2.45545	3.994735	5.53402	0.0438092	4.0843e-4	0.14901	0.0181306
chr7	128746063	128746162	3408443	0	+	0.333333	(0.32,0.35]	chr7	318422	63	INTRON	INTRON	CALU	ENSG00000128595.17	ENST00000535011.6:ENST00000542996.6:ENST00000249364.9:ENST00000449187.6:ENST00000479257.5	protein_coding	protein_coding	protein_coding	protein_coding	3	79	2	2.56589	3.9944699999999997	5.42305	0.00204522	0.00149027	0.041908	0.035
chr1	174012756	174012856	587949	0	-	0.34	(0.32,0.35]	chr1	70762	30	INTRON	INTRON	RC3H1:RC3H1-IT1	ENSG00000135870.12:ENSG00000236535.1	ENST00000367696.7:ENST00000421851.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	0	22	2	3.94529	3.994465	4.04364	0.0693433	0.034181	0.184298	0.146815
chr1	176147608	176147707	591111	0	-	0.323232	(0.32,0.35]	chr1	70944	107	INTRON	INTRON	COP1	ENSG00000143207.21	ENST00000367669.8:ENST00000367667.5:ENST00000367666.5:ENST00000649803.1:ENST00000308769.12:ENST00000498306.5:ENST00000491600.5:ENST00000474194.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	22	2	3.94529	3.994465	4.04364	0.0693433	0.034181	0.184298	0.146815
chr1	226269388	226269488	647453	0	-	0.35	(0.32,0.35]	chr1	76715	9	INTRON	INTRON	LIN9	ENSG00000183814.16	ENST00000460719.5:ENST00000366808.6:ENST00000328205.9:ENST00000681046.1:ENST00000481685.1	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.94529	3.994465	4.04364	0.0693433	0.034181	0.184298	0.146815
chr10	50525615	50525715	4619706	0	-	0.35	(0.32,0.35]	chr10	425452	53	INTRON	INTRON	SGMS1	ENSG00000198964.14	ENST00000429490.5:ENST00000361781.7:ENST00000619438.4:ENST00000609445.5:ENST00000608287.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	22	2	3.94529	3.994465	4.04364	0.0693433	0.034181	0.184298	0.146815
chr10	114824505	114824604	4527510	0	+	0.343434	(0.32,0.35]	chr10	417484	20	INTRON	INTRON	FHIP2A	ENSG00000151553.15	ENST00000369250.7:ENST00000369246.1:ENST00000369248.9	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.94529	3.994465	4.04364	0.0693433	0.034181	0.184298	0.146815
chr10	119069854	119069954	4704813	0	-	0.33	(0.32,0.35]	chr10	433995	2	SS3_PROX	SS3_PROX:INTRON	EIF3A	ENSG00000107581.13	ENST00000369144.8:ENST00000541549.2	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.94529	3.994465	4.04364	0.0693433	0.034181	0.184298	0.146815
chr11	47783298	47783398	4951477	0	-	0.33	(0.32,0.35]	chr11	464474	1	SS3_PROX	SS3_PROX:INTRON	NUP160	ENSG00000030066.14	ENST00000694866.1:ENST00000378460.7:ENST00000530326.5	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.94529	3.994465	4.04364	0.0693433	0.034181	0.184298	0.146815
chr12	62394200	62394299	5150917	0	+	0.343434	(0.32,0.35]	chr12	487419	6	INTRON	INTRON	USP15	ENSG00000135655.16	ENST00000353364.7:ENST00000280377.10:ENST00000549415.1:ENST00000548620.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	22	2	3.94529	3.994465	4.04364	0.0693433	0.034181	0.184298	0.146815
chr12	70269752	70269852	5166695	0	+	0.33	(0.32,0.35]	chr12	489374	251	INTRON	INTRON	CNOT2	ENSG00000111596.14	ENST00000547780.5:ENST00000418359.7:ENST00000552319.5:ENST00000550160.5:ENST00000551661.5:ENST00000551132.5:ENST00000553078.5:ENST00000548021.5:ENST00000550641.6:ENST00000229195.8:ENST00000552915.5:ENST00000549443.5:ENST00000548741.5:ENST00000552483.5:ENST00000552422.5:ENST00000551179.1:ENST00000547321.5:ENST00000553020.5:ENST00000548159.5:ENST00000549750.5:ENST00000551043.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	22	2	3.94529	3.994465	4.04364	0.0693433	0.034181	0.184298	0.146815
chr12	125131140	125131239	5246128	0	+	0.323232	(0.32,0.35]	chr12	498821	13	INTRON	INTRON	AACS	ENSG00000081760.17	ENST00000316519.11:ENST00000316543.14:ENST00000539251.5:ENST00000538851.5:ENST00000545511.5:ENST00000536118.5:ENST00000543665.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	22	2	3.94529	3.994465	4.04364	0.0693433	0.034181	0.184298	0.146815
chr13	99301458	99301558	5525447	0	+	0.33	(0.32,0.35]	chr13	528241	565	INTRON	INTRON	UBAC2	ENSG00000134882.16	ENST00000355700.9:ENST00000403766.8:ENST00000468067.5:ENST00000473091.5:ENST00000376440.6:ENST00000494576.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	22	2	3.94529	3.994465	4.04364	0.0693433	0.034181	0.184298	0.146815
chr14	58245478	58245576	5730908	0	+	0.346939	(0.32,0.35]	chr14	544076	1	INTRON	INTRON	PSMA3	ENSG00000100567.13	ENST00000216455.9:ENST00000554812.5:ENST00000553665.5:ENST00000557087.5:ENST00000555931.5:ENST00000412908.6:ENST00000555743.1:ENST00000557508.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	22	2	3.94529	3.994465	4.04364	0.0693433	0.034181	0.184298	0.146815
chr14	102864096	102864196	5824799	0	+	0.34	(0.32,0.35]	chr14	552572	333	INTRON	INTRON	TRAF3	ENSG00000131323.16	ENST00000392745.8:ENST00000560371.5:ENST00000347662.8:ENST00000539721.5:ENST00000560463.5:ENST00000351691.9	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.94529	3.994465	4.04364	0.0693433	0.034181	0.184298	0.146815
chr15	59666625	59666723	6194551	0	-	0.326531	(0.32,0.35]	chr15	590182	8	INTRON	INTRON	ENSG00000227161:BNIP2	ENSG00000227161.1:ENSG00000140299.13	ENST00000441746.1:ENST00000267859.8:ENST00000607373.6:ENST00000612191.4:ENST00000478981.1:ENST00000439052.5:ENST00000415213.7	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA:processed_transcript	0	22	2	3.94529	3.994465	4.04364	0.0693433	0.034181	0.184298	0.146815
chr16	18884747	18884828	6457683	0	-	0.320988	(0.32,0.35]	chr16	622846	2	SS5_PROX	SS5_PROX:INTRON	SMG1	ENSG00000157106.18	ENST00000446231.7:ENST00000565324.5:ENST00000561947.5:ENST00000565224.5:ENST00000532700.6	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.94529	3.994465	4.04364	0.0693433	0.034181	0.184298	0.146815
chr16	47376939	47377038	6482856	0	-	0.323232	(0.32,0.35]	chr16	627011	6	INTRON	INTRON	ITFG1	ENSG00000129636.13	ENST00000320640.11:ENST00000542691.5:ENST00000544001.6:ENST00000569551.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	22	2	3.94529	3.994465	4.04364	0.0693433	0.034181	0.184298	0.146815
chr16	53228387	53228482	6352469	0	+	0.336842	(0.32,0.35]	chr16	609730	4	INTRON	INTRON	CHD9	ENSG00000177200.18	ENST00000447540.6:ENST00000566029.5:ENST00000615216.4:ENST00000564845.5:ENST00000398510.7:ENST00000564255.5:ENST00000565803.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	22	2	3.94529	3.994465	4.04364	0.0693433	0.034181	0.184298	0.146815
chr17	46645156	46645256	6619558	0	+	0.34	(0.32,0.35]	chr17	645602	15	INTRON	INTRON	NSF	ENSG00000073969.18	ENST00000398238.8:ENST00000575068.5	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.94529	3.994465	4.04364	0.0693433	0.034181	0.184298	0.146815
chr19	14446761	14446861	7024521	0	+	0.35	(0.32,0.35]	chr19	698876	2	SS5_PROX	SS5_PROX:INTRON	PKN1	ENSG00000123143.13	ENST00000242783.11:ENST00000585839.5:ENST00000586557.5:ENST00000590097.5:ENST00000342216.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	22	2	3.94529	3.994465	4.04364	0.0693433	0.034181	0.184298	0.146815
chr19	36231496	36231595	7057590	0	+	0.333333	(0.32,0.35]	chr19	704670	23	INTRON	INTRON	ZNF146	ENSG00000167635.12	ENST00000456324.5:ENST00000591063.5:ENST00000443387.3:ENST00000586094.5:ENST00000587285.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	22	2	3.94529	3.994465	4.04364	0.0693433	0.034181	0.184298	0.146815
chr2	15350295	15350395	1071021	0	-	0.35	(0.32,0.35]	chr2	114279	192	INTRON	INTRON	NBAS	ENSG00000151779.13	ENST00000281513.10:ENST00000442506.5	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.94529	3.994465	4.04364	0.0693433	0.034181	0.184298	0.146815
chr21	37499339	37499438	7407567	0	+	0.333333	(0.32,0.35]	chr21	754944	27	INTRON	INTRON	DYRK1A	ENSG00000157540.22	ENST00000646523.1:ENST00000647425.1:ENST00000647188.2:ENST00000647504.1:ENST00000644942.1:ENST00000338785.8:ENST00000643624.1:ENST00000398960.7:ENST00000646548.1:ENST00000645424.1:ENST00000643854.1:ENST00000642309.1:ENST00000645774.1:ENST00000398956.2:ENST00000643808.1:ENST00000644367.1:ENST00000646224.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	22	2	3.94529	3.994465	4.04364	0.0693433	0.034181	0.184298	0.146815
chr22	41637028	41637107	7524345	0	+	0.329114	(0.32,0.35]	chr22	769077	3	SS5_PROX	SS5_PROX:INTRON	XRCC6	ENSG00000196419.13	ENST00000428575.6:ENST00000402580.7:ENST00000360079.8:ENST00000359308.8:ENST00000405878.5:ENST00000405506.2	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.94529	3.994465	4.04364	0.0693433	0.034181	0.184298	0.146815
chr5	31531105	31531186	2597002	0	-	0.345679	(0.32,0.35]	chr5	246718	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DROSHA	ENSG00000113360.17	ENST00000344624.8:ENST00000511367.6:ENST00000513349.5:ENST00000507438.5:ENST00000504361.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	22	2	3.94529	3.994465	4.04364	0.0693433	0.034181	0.184298	0.146815
chr5	90673097	90673197	2421558	0	+	0.33	(0.32,0.35]	chr5	232888	2	SS5_PROX	SS5_PROX:INTRON	ADGRV1	ENSG00000164199.18	ENST00000405460.9:ENST00000640403.1:ENST00000639676.1:ENST00000639473.1:ENST00000450321.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	22	2	3.94529	3.994465	4.04364	0.0693433	0.034181	0.184298	0.146815
chr6	17605029	17605129	2826663	0	+	0.33	(0.32,0.35]	chr6	265425	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	FAM8A1	ENSG00000137414.7	ENST00000259963.4:ENST00000688732.1:ENST00000690940.1:ENST00000691422.1:ENST00000692803.1:ENST00000685064.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	22	2	3.94529	3.994465	4.04364	0.0693433	0.034181	0.184298	0.146815
chr6	43563713	43563809	3097210	0	-	0.333333	(0.32,0.35]	chr6	290091	10	INTRON	INTRON	XPO5	ENSG00000124571.18	ENST00000265351.12	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.94529	3.994465	4.04364	0.0693433	0.034181	0.184298	0.146815
chr7	5716615	5716715	3474307	0	-	0.35	(0.32,0.35]	chr7	324843	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	RNF216	ENSG00000011275.19	ENST00000425013.6:ENST00000389902.8:ENST00000389900.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	22	2	3.94529	3.994465	4.04364	0.0693433	0.034181	0.184298	0.146815
chr7	74491315	74491415	3334030	0	+	0.34	(0.32,0.35]	chr7	310175	368	INTRON	INTRON	GTF2IRD1	ENSG00000006704.11	ENST00000265755.7:ENST00000424337.7:ENST00000455841.6	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.94529	3.994465	4.04364	0.0693433	0.034181	0.184298	0.146815
chr7	135466002	135466102	3648520	0	-	0.34	(0.32,0.35]	chr7	339187	272	INTRON	INTRON	CNOT4	ENSG00000080802.20	ENST00000541284.6:ENST00000451834.5:ENST00000423368.6:ENST00000361528.8:ENST00000428680.6:ENST00000315544.6:ENST00000491203.5:ENST00000498534.5:ENST00000465721.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	22	2	3.94529	3.994465	4.04364	0.0693433	0.034181	0.184298	0.146815
chr7	135621282	135621381	3428984	0	+	0.333333	(0.32,0.35]	chr7	319784	10	INTRON	INTRON	NUP205	ENSG00000155561.15	ENST00000285968.11:ENST00000607647.5:ENST00000477620.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	22	2	3.94529	3.994465	4.04364	0.0693433	0.034181	0.184298	0.146815
chr8	18012895	18012989	3708676	0	+	0.329787	(0.32,0.35]	chr8	344016	7	INTRON	INTRON	PCM1	ENSG00000078674.19	ENST00000325083.13:ENST00000519253.5:ENST00000524226.5:ENST00000522275.5	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.94529	3.994465	4.04364	0.0693433	0.034181	0.184298	0.146815
chr8	47899247	47899336	3945121	0	-	0.348315	(0.32,0.35]	chr8	361835	3	INTRON	INTRON	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.94529	3.994465	4.04364	0.0693433	0.034181	0.184298	0.146815
chr8	47936084	47936168	3945513	0	-	0.321429	(0.32,0.35]	chr8	361928	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.94529	3.994465	4.04364	0.0693433	0.034181	0.184298	0.146815
chr9	92412658	92412758	4155313	0	+	0.33	(0.32,0.35]	chr9	379002	324	INTRON	INTRON	CENPP	ENSG00000188312.14	ENST00000375587.8	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.94529	3.994465	4.04364	0.0693433	0.034181	0.184298	0.146815
chr2	17769011	17769111	706702	0	+	0.47	(0.44,0.476]	chr2	81867	2	SS5_PROX	SS5_PROX:INTRON	GEN1	ENSG00000178295.15	ENST00000317402.11:ENST00000381254.7	protein_coding	protein_coding	protein_coding	protein_coding	1	44	2	3.02366	3.9942849999999996	4.96491	0.00603307	0.0034249	0.0700813	0.0517761
chr1	150618633	150618733	551270	0	-	0.41	(0.408,0.44]	chr1	64776	170	INTRON	INTRON	ENSA	ENSG00000143420.19	ENST00000369016.8	protein_coding	protein_coding	protein_coding	protein_coding	6	107	2	1.68203	3.9942450000000003	6.30646	0.0175685	1.72065e-6	0.105143	7.91759e-4
chr1	174258268	174258368	258103	0	+	0.43	(0.408,0.44]	chr1	30773	53	INTRON	INTRON	RABGAP1L	ENSG00000152061.24	ENST00000357444.10:ENST00000251507.8:ENST00000681986.1:ENST00000457696.1	protein_coding	protein_coding	protein_coding	protein_coding	3	74	2	1.93002	3.99418	6.05834	0.022095	4.06336e-5	0.123903	0.00539487
chr22	22487077	22487175	7562056	0	-	0.326531	(0.32,0.35]	chr22	773556	28	UTR3	UTR3:EXON_MRNA	ZNF280B	ENSG00000275004.4	ENST00000626650.3:ENST00000619852.2:ENST00000613655.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	79	2	2.02133	3.9940949999999997	5.96686	0.017146	1.77352e-4	0.111072	0.0121697
chr10	35338206	35338306	4424519	0	+	0.39	(0.378,0.408]	chr10	407899	6	INTRON	INTRON	CCNY	ENSG00000108100.18	ENST00000374706.5:ENST00000490012.6:ENST00000493157.6:ENST00000374704.8:ENST00000265375.13:ENST00000339497.7:ENST00000492478.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	60	2	2.56408	3.99383	5.42358	0.00566993	8.39231e-4	0.0678837	0.0266487
chr3	196937338	196937423	1900318	0	-	0.364706	(0.35,0.378]	chr3	190329	4	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NCBP2	ENSG00000114503.11	ENST00000467803.1:ENST00000321256.10:ENST00000447325.5:ENST00000463783.1:ENST00000428425.1:ENST00000427641.2:ENST00000452404.6:ENST00000468923.5:ENST00000422610.5:ENST00000411704.1:ENST00000479647.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	105	2	3.78912	3.99383	4.19854	4.25686e-4	2.91516e-5	0.0189958	0.00428471
chr7	123556532	123556629	3631961	0	-	0.402062	(0.378,0.408]	chr7	337518	20	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	NDUFA5	ENSG00000128609.16	ENST00000355749.7:ENST00000471770.5:ENST00000678090.1:ENST00000679163.1:ENST00000676614.1:ENST00000677251.1:ENST00000676730.1:ENST00000677306.1:ENST00000676516.1:ENST00000677391.1:ENST00000677264.1:ENST00000611607.4:ENST00000618945.4:ENST00000492549.6:ENST00000678032.1:ENST00000679052.1:ENST00000467117.6:ENST00000677134.1:ENST00000378795.9:ENST00000470123.2:ENST00000466896.5:ENST00000678251.1:ENST00000491033.1:ENST00000490618.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	62	2	2.98295	3.9937700000000005	5.00459	0.00371142	9.47389e-4	0.0535094	0.0282007
chr13	113255824	113255923	5548771	0	+	0.353535	(0.35,0.378]	chr13	530211	3	INTRON	INTRON	CUL4A	ENSG00000139842.15	ENST00000375441.7:ENST00000326335.8:ENST00000451881.5:ENST00000617546.4:ENST00000375440.9:ENST00000472083.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	50	2	2.72497	3.99374	5.26251	0.0198266	6.20882e-4	0.109608	0.0223951
chr3	195280424	195280523	1894257	0	-	0.363636	(0.35,0.378]	chr3	189540	6	INTRON	INTRON	ACAP2	ENSG00000114331.16	ENST00000326793.11	protein_coding	protein_coding	protein_coding	protein_coding	1	50	2	2.72497	3.99374	5.26251	0.0198266	6.20882e-4	0.109608	0.0223951
chr7	107122104	107122204	3377943	0	+	0.36	(0.35,0.378]	chr7	316257	1	SS5_PROX	SS5_PROX:INTRON	PRKAR2B	ENSG00000005249.13	ENST00000265717.5:ENST00000393613.6:ENST00000488792.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	47	2	3.26794	3.993735	4.71953	0.0103314	0.00257067	0.0850389	0.0466761
chr11	64228156	64228242	4802462	0	+	0.453488	(0.44,0.476]	chr11	445392	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NUDT22	ENSG00000149761.9	ENST00000543358.5:ENST00000279206.8:ENST00000422364.2:ENST00000441250.6:ENST00000535000.1:ENST00000428347.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	47	2	2.86231	3.99372	5.12513	0.012214	7.96486e-4	0.0910127	0.0258804
chr7	99363933	99364033	3361467	0	+	0.42	(0.408,0.44]	chr7	313840	3	SS5_PROX	SS5_PROX:INTRON	ARPC1A	ENSG00000241685.10	ENST00000262942.10:ENST00000432786.5:ENST00000463009.1:ENST00000477240.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	48	2	3.05705	3.993645	4.93024	0.00658331	0.00170369	0.0701901	0.0381936
chr11	77722173	77722272	4994986	0	-	0.363636	(0.35,0.378]	chr11	472023	39	INTRON	INTRON	RSF1	ENSG00000048649.14	ENST00000308488.11:ENST00000526324.5:ENST00000528095.5:ENST00000534794.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	50	2	2.83709	3.9936249999999998	5.15016	0.01435	9.78549e-4	0.0966737	0.0287765
chr2	70290416	70290507	1152579	0	-	0.285714	(0.28,0.32]	chr2	123139	7	INTRON	INTRON	SNRPG	ENSG00000143977.14	ENST00000272348.7:ENST00000429728.1:ENST00000482975.6:ENST00000438261.5:ENST00000454893.1:ENST00000413456.6:ENST00000449935.6:ENST00000480370.1:ENST00000488400.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	68	2	2.42868	3.993565	5.55845	0.0105331	0.00141854	0.0908969	0.0340865
chr13	52168805	52168905	5597233	0	-	0.52	(0.515,0.57]	chr13	535080	12	EXON_LNCRNA	EXON_LNCRNA	ENSG00000217576:MRPS31P5	ENSG00000217576.7:ENSG00000243406.6	ENST00000451298.1:ENST00000416599.5	lncRNA	lncRNA	lncRNA:transcribed_unprocessed_pseudogene	lncRNA:processed_transcript	2	57	2	2.32967	3.993525	5.65738	0.0133671	3.32659e-5	0.0946278	0.00461719
chr1	1565913	1566013	360233	0	-	0.45	(0.44,0.476]	chr1	41853	6	INTRON	INTRON	SSU72	ENSG00000160075.12	ENST00000291386.4:ENST00000378725.3:ENST00000359060.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	21	2	3.97626	3.9933199999999998	4.01038	0.0433743	0.0300538	0.148082	0.142135
chr1	113897053	113897152	526593	0	-	0.454545	(0.44,0.476]	chr1	61999	7	EXON_LNCRNA	EXON_LNCRNA:INTRON	AP4B1	ENSG00000134262.13	ENST00000369569.6:ENST00000256658.8:ENST00000369567.5:ENST00000479285.5:ENST00000462591.1:ENST00000479801.1:ENST00000484201.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	21	2	3.97626	3.9933199999999998	4.01038	0.0433743	0.0300538	0.148082	0.142135
chr1	230084892	230084992	334255	0	+	0.46	(0.44,0.476]	chr1	38926	171	INTRON	INTRON	GALNT2	ENSG00000143641.10	ENST00000494106.1:ENST00000366672.5:ENST00000488903.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	21	2	3.97626	3.9933199999999998	4.01038	0.0433743	0.0300538	0.148082	0.142135
chr1	246201826	246201926	677653	0	-	0.47	(0.44,0.476]	chr1	79733	82	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000453676.5:ENST00000462422.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	21	2	3.97626	3.9933199999999998	4.01038	0.0433743	0.0300538	0.148082	0.142135
chr10	89740474	89740572	4484967	0	+	0.44898	(0.44,0.476]	chr10	412803	10	INTRON	INTRON	KIF20B	ENSG00000138182.15	ENST00000371728.8:ENST00000260753.8:ENST00000478929.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	21	2	3.97626	3.9933199999999998	4.01038	0.0433743	0.0300538	0.148082	0.142135
chr10	125125853	125125952	4713992	0	-	0.454545	(0.44,0.476]	chr10	434919	26	INTRON	INTRON	CTBP2	ENSG00000175029.17	ENST00000337195.9:ENST00000411419.6:ENST00000494626.6:ENST00000531469.5:ENST00000460976.5:ENST00000476817.1:ENST00000530884.1:ENST00000530930.1:ENST00000467395.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	21	2	3.97626	3.9933199999999998	4.01038	0.0433743	0.0300538	0.148082	0.142135
chr11	32590824	32590922	4764545	0	+	0.469388	(0.44,0.476]	chr11	440571	8	INTRON	INTRON	EIF3M	ENSG00000149100.13	ENST00000531921.5:ENST00000531120.6:ENST00000525782.5:ENST00000524896.5:ENST00000532444.5:ENST00000323213.9:ENST00000524711.5:ENST00000530026.5:ENST00000526267.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	21	2	3.97626	3.9933199999999998	4.01038	0.0433743	0.0300538	0.148082	0.142135
chr11	34469578	34469676	4768974	0	+	0.459184	(0.44,0.476]	chr11	441274	8	INTRON	INTRON	CAT	ENSG00000121691.7	ENST00000241052.5	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	3.97626	3.9933199999999998	4.01038	0.0433743	0.0300538	0.148082	0.142135
chr12	11070182	11070282	5268496	0	-	0.45	(0.44,0.476]	chr12	502251	80	INTRON	INTRON	ENSG00000275778:PRH1	ENSG00000275778.2:ENSG00000231887.8	ENST00000536668.2:ENST00000535024.6:ENST00000541977.5:ENST00000546265.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	21	2	3.97626	3.9933199999999998	4.01038	0.0433743	0.0300538	0.148082	0.142135
chr12	103773688	103773787	5401116	0	-	0.454545	(0.44,0.476]	chr12	515204	15	UTR3	UTR3:EXON_MRNA:INTRON	NT5DC3	ENSG00000111696.12	ENST00000447799.5:ENST00000392876.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	21	2	3.97626	3.9933199999999998	4.01038	0.0433743	0.0300538	0.148082	0.142135
chr16	15685486	15685585	6307242	0	+	0.474747	(0.44,0.476]	chr16	603439	72	INTRON	INTRON	NDE1	ENSG00000072864.16	ENST00000396355.5:ENST00000674888.1:ENST00000675171.1:ENST00000675951.1:ENST00000674900.1:ENST00000674588.1:ENST00000674538.1:ENST00000396354.6:ENST00000675926.1:ENST00000573203.5:ENST00000674995.1:ENST00000674554.1:ENST00000674581.1:ENST00000577101.6:ENST00000572756.6:ENST00000574163.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	21	2	3.97626	3.9933199999999998	4.01038	0.0433743	0.0300538	0.148082	0.142135
chr16	17961057	17961157	6452239	0	-	0.45	(0.44,0.476]	chr16	621943	275	INTRON	INTRON	ENSG00000259929	ENSG00000259929.5	ENST00000569048.5	lncRNA	lncRNA	lncRNA	lncRNA	0	21	2	3.97626	3.9933199999999998	4.01038	0.0433743	0.0300538	0.148082	0.142135
chr18	2748645	2748744	6865832	0	+	0.454545	(0.44,0.476]	chr18	680110	6	INTRON	INTRON	SMCHD1	ENSG00000101596.17	ENST00000320876.11:ENST00000688342.1:ENST00000693213.1:ENST00000577880.5:ENST00000584897.5:ENST00000583441.2:ENST00000690757.1:ENST00000686763.1:ENST00000686864.1:ENST00000688708.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	21	2	3.97626	3.9933199999999998	4.01038	0.0433743	0.0300538	0.148082	0.142135
chr18	49256009	49256109	6970935	0	-	0.47	(0.44,0.476]	chr18	689779	459	INTRON	INTRON	DYM	ENSG00000141627.14	ENST00000675505.1:ENST00000269445.10:ENST00000442713.6	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	3.97626	3.9933199999999998	4.01038	0.0433743	0.0300538	0.148082	0.142135
chr18	57583973	57584072	6980448	0	-	0.454545	(0.44,0.476]	chr18	690634	34	INTRON	INTRON	FECH	ENSG00000066926.13	ENST00000262093.11:ENST00000652755.1:ENST00000651787.1:ENST00000382873.8:ENST00000585494.5:ENST00000682485.1:ENST00000592699.6:ENST00000585699.1:ENST00000585747.1:ENST00000585878.1:ENST00000592111.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	21	2	3.97626	3.9933199999999998	4.01038	0.0433743	0.0300538	0.148082	0.142135
chr19	57857979	57858075	7106117	0	+	0.46875	(0.44,0.476]	chr19	713238	14	INTRON	INTRON	ENSG00000268750:ZNF587	ENSG00000268750.7:ENSG00000198466.12	ENST00000596498.2:ENST00000593873.6:ENST00000603271.1:ENST00000598031.1:ENST00000604231.1:ENST00000339656.8:ENST00000423137.1:ENST00000419854.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	21	2	3.97626	3.9933199999999998	4.01038	0.0433743	0.0300538	0.148082	0.142135
chr2	12490343	12490443	701370	0	+	0.47	(0.44,0.476]	chr2	81548	737	INTRON	INTRON	MIR3681HG	ENSG00000224184.6	ENST00000412294.5:ENST00000653212.1:ENST00000664018.1:ENST00000412606.2:ENST00000653484.1:ENST00000667283.1:ENST00000654108.1	lncRNA	lncRNA	lncRNA	lncRNA	0	21	2	3.97626	3.9933199999999998	4.01038	0.0433743	0.0300538	0.148082	0.142135
chr2	24339410	24339510	1082773	0	-	0.46	(0.44,0.476]	chr2	115714	109	INTRON	INTRON	ITSN2	ENSG00000198399.16	ENST00000355123.9:ENST00000361999.7:ENST00000406921.7:ENST00000412011.5:ENST00000443927.5:ENST00000407704.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	21	2	3.97626	3.9933199999999998	4.01038	0.0433743	0.0300538	0.148082	0.142135
chr2	96735783	96735878	1181563	0	-	0.473684	(0.44,0.476]	chr2	126583	9	INTRON	INTRON	LMAN2L	ENSG00000114988.12	ENST00000264963.9:ENST00000434524.5:ENST00000377079.8:ENST00000446780.5:ENST00000434865.5:ENST00000440610.5:ENST00000449221.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	21	2	3.97626	3.9933199999999998	4.01038	0.0433743	0.0300538	0.148082	0.142135
chr2	177433926	177434026	926498	0	+	0.47	(0.44,0.476]	chr2	101797	2	SS3_PROX	SS3_PROX:INTRON	AGPS	ENSG00000018510.18	ENST00000679459.1:ENST00000637633.2:ENST00000680770.1:ENST00000680705.1:ENST00000681752.1:ENST00000460342.2:ENST00000681565.1:ENST00000680893.1:ENST00000681032.1:ENST00000679421.1:ENST00000680910.1:ENST00000680677.1:ENST00000409888.1:ENST00000642466.2:ENST00000264167.11:ENST00000680155.1:ENST00000679478.1:ENST00000681449.1:ENST00000681891.1:ENST00000681028.1:ENST00000679639.1:ENST00000680028.1:ENST00000679994.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	21	2	3.97626	3.9933199999999998	4.01038	0.0433743	0.0300538	0.148082	0.142135
chr20	32741079	32741179	7328024	0	-	0.47	(0.44,0.476]	chr20	746213	126	INTRON	INTRON	ENSG00000285382:COMMD7	ENSG00000285382.1:ENSG00000149600.12	ENST00000645058.1:ENST00000642484.1:ENST00000642630.1:ENST00000646357.1:ENST00000278980.11:ENST00000446419.6:ENST00000610160.1:ENST00000474815.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	21	2	3.97626	3.9933199999999998	4.01038	0.0433743	0.0300538	0.148082	0.142135
chr20	56377444	56377543	7358732	0	-	0.474747	(0.44,0.476]	chr20	750346	35	INTRON	INTRON	AURKA	ENSG00000087586.18	ENST00000395914.5:ENST00000395913.7:ENST00000312783.10:ENST00000395911.5:ENST00000395915.8:ENST00000347343.6:ENST00000371356.6:ENST00000395907.5:ENST00000441357.5	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	3.97626	3.9933199999999998	4.01038	0.0433743	0.0300538	0.148082	0.142135
chr21	43674295	43674375	7412913	0	+	0.4625	(0.44,0.476]	chr21	755423	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RRP1B	ENSG00000160208.13	ENST00000340648.6	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	3.97626	3.9933199999999998	4.01038	0.0433743	0.0300538	0.148082	0.142135
chr21	46337558	46337658	7421351	0	+	0.45	(0.44,0.476]	chr21	756713	24	INTRON	INTRON	PCNT	ENSG00000160299.18	ENST00000466474.6:ENST00000490468.5:ENST00000695525.1:ENST00000695558.1:ENST00000359568.10:ENST00000695526.1:ENST00000480896.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	21	2	3.97626	3.9933199999999998	4.01038	0.0433743	0.0300538	0.148082	0.142135
chr22	17040316	17040415	7474379	0	+	0.464646	(0.44,0.476]	chr22	762034	26	INTRON	INTRON	CECR7	ENSG00000237438.7	ENST00000441006.5:ENST00000414401.5:ENST00000609932.5:ENST00000609596.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	21	2	3.97626	3.9933199999999998	4.01038	0.0433743	0.0300538	0.148082	0.142135
chr22	40800868	40800967	7590194	0	-	0.464646	(0.44,0.476]	chr22	777203	8	INTRON	INTRON	SLC25A17	ENSG00000100372.15	ENST00000544408.5:ENST00000435456.7:ENST00000491545.5:ENST00000263255.10:ENST00000447566.5:ENST00000420970.5:ENST00000430221.5:ENST00000427084.5:ENST00000458600.5:ENST00000443810.5:ENST00000412879.5:ENST00000426396.5:ENST00000434193.5:ENST00000449676.5:ENST00000434185.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	21	2	3.97626	3.9933199999999998	4.01038	0.0433743	0.0300538	0.148082	0.142135
chr3	196903332	196903432	1596799	0	+	0.45	(0.44,0.476]	chr3	165410	4	SS3_PROX	SS3_PROX:INTRON	SENP5	ENSG00000119231.11	ENST00000445299.6:ENST00000323460.10:ENST00000419026.5:ENST00000489744.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	21	2	3.97626	3.9933199999999998	4.01038	0.0433743	0.0300538	0.148082	0.142135
chr4	67722117	67722217	1965296	0	+	0.45	(0.44,0.476]	chr4	197308	18	EXON_LNCRNA	EXON_LNCRNA:INTRON	UBA6-DT	ENSG00000248049.8	ENST00000660649.1:ENST00000654961.1:ENST00000656992.1:ENST00000500538.7:ENST00000498917.2:ENST00000665294.1:ENST00000693410.1:ENST00000667140.1:ENST00000666396.1:ENST00000506606.1:ENST00000664183.1:ENST00000663060.1:ENST00000660972.1:ENST00000665498.1	lncRNA	lncRNA	lncRNA	lncRNA	0	21	2	3.97626	3.9933199999999998	4.01038	0.0433743	0.0300538	0.148082	0.142135
chr5	70069830	70069907	2382616	0	+	0.454545	(0.44,0.476]	chr5	229636	1	INTRON	INTRON	SMN2	ENSG00000205571.14	ENST00000511812.5:ENST00000626847.2:ENST00000506734.5:ENST00000380742.8:ENST00000380743.9:ENST00000614240.4:ENST00000380741.8:ENST00000628696.2:ENST00000638794.1:ENST00000503678.5:ENST00000511873.6:ENST00000509805.5:ENST00000505346.5:ENST00000514914.1:ENST00000508258.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	21	2	3.97626	3.9933199999999998	4.01038	0.0433743	0.0300538	0.148082	0.142135
chr5	157792495	157792590	2757977	0	-	0.452632	(0.44,0.476]	chr5	260256	1	INTRON	INTRON	CLINT1	ENSG00000113282.14	ENST00000523094.5:ENST00000411809.7:ENST00000530742.5:ENST00000518855.5:ENST00000523908.5:ENST00000530302.1:ENST00000521615.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	21	2	3.97626	3.9933199999999998	4.01038	0.0433743	0.0300538	0.148082	0.142135
chr5	180530187	180530286	2562223	0	+	0.464646	(0.44,0.476]	chr5	245090	4	INTRON	INTRON	CNOT6	ENSG00000113300.13	ENST00000261951.9:ENST00000393356.7:ENST00000507016.1:ENST00000618123.4:ENST00000502447.1:ENST00000504343.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	21	2	3.97626	3.9933199999999998	4.01038	0.0433743	0.0300538	0.148082	0.142135
chr6	37305430	37305530	2855794	0	+	0.45	(0.44,0.476]	chr6	269985	137	INTRON	INTRON	TBC1D22B	ENSG00000065491.8	ENST00000373491.3	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	3.97626	3.9933199999999998	4.01038	0.0433743	0.0300538	0.148082	0.142135
chr6	157064091	157064191	3010040	0	+	0.47	(0.44,0.476]	chr6	281150	123	INTRON	INTRON	ARID1B	ENSG00000049618.24	ENST00000346085.10:ENST00000636930.2:ENST00000647938.1:ENST00000350026.10:ENST00000674190.1:ENST00000414678.7:ENST00000319584.11:ENST00000452544.2:ENST00000637887.1:ENST00000635849.1:ENST00000637003.1:ENST00000637904.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	21	2	3.97626	3.9933199999999998	4.01038	0.0433743	0.0300538	0.148082	0.142135
chr7	73004511	73004605	3554168	0	-	0.446809	(0.44,0.476]	chr7	330671	4	INTRON	INTRON	STAG3L3	ENSG00000174353.17	ENST00000436857.5:ENST00000428423.5:ENST00000448173.5:ENST00000423834.6:ENST00000569650.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	21	2	3.97626	3.9933199999999998	4.01038	0.0433743	0.0300538	0.148082	0.142135
chr7	75350642	75350741	3558123	0	-	0.454545	(0.44,0.476]	chr7	331449	62	INTRON	INTRON	PMS2P2	ENSG00000278416.1	ENST00000425039.3	translated_unprocessed_pseudogene	translated_unprocessed_pseudogene	translated_unprocessed_pseudogene	translated_unprocessed_pseudogene	0	21	2	3.97626	3.9933199999999998	4.01038	0.0433743	0.0300538	0.148082	0.142135
chr8	33491718	33491816	3729471	0	+	0.459184	(0.44,0.476]	chr8	346744	10	INTRON	INTRON	MAK16	ENSG00000198042.11	ENST00000360128.11:ENST00000518389.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	21	2	3.97626	3.9933199999999998	4.01038	0.0433743	0.0300538	0.148082	0.142135
chrX	136008356	136008455	7726888	0	+	0.454545	(0.44,0.476]	chrX	790632	58	INTRON	INTRON	SLC9A6	ENSG00000198689.13	ENST00000636347.1:ENST00000636092.1:ENST00000637195.1:ENST00000637234.1:ENST00000637581.1:ENST00000370701.6:ENST00000370698.7:ENST00000630721.3:ENST00000678163.1:ENST00000370695.8:ENST00000675856.1:ENST00000643775.1:ENST00000674809.1:ENST00000676043.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	21	2	3.97626	3.9933199999999998	4.01038	0.0433743	0.0300538	0.148082	0.142135
chr2	167824027	167824127	1258040	0	-	0.33	(0.32,0.35]	chr2	133322	84	INTRON	INTRON	B3GALT1-AS1	ENSG00000235335.3	ENST00000430546.2:ENST00000657553.1:ENST00000670221.1:ENST00000436982.2	lncRNA	lncRNA	lncRNA	lncRNA	1	48	2	2.96746	3.993315	5.01917	0.00815799	0.0055659	0.0810802	0.0648867
chr6	87649036	87649136	2916198	0	+	0.34	(0.32,0.35]	chr6	275532	122	INTRON	INTRON	ORC3	ENSG00000135336.16	ENST00000546266.5:ENST00000257789.4:ENST00000392844.8:ENST00000681069.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	48	2	2.96746	3.993315	5.01917	0.00815799	0.0055659	0.0810802	0.0648867
chr16	3677197	3677297	6434062	0	-	0.66	(0.57,1]	chr16	619331	3	SS5_PROX	SS5_PROX:INTRON	TRAP1	ENSG00000126602.11	ENST00000246957.10:ENST00000538171.5:ENST00000575671.5:ENST00000573872.5:ENST00000576335.5:ENST00000574175.1:ENST00000575854.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	42	2	3.20917	3.9932350000000003	4.7773	5.07088e-4	2.02775e-4	0.0202328	0.0129814
chr19	23786573	23786673	7042670	0	+	0.44	(0.408,0.44]	chr19	702222	4	SS3_PROX	SS3_PROX:INTRON	RPSAP58	ENSG00000288920.1	ENST00000471224.5:ENST00000692590.1:ENST00000475499.2:ENST00000686829.1:ENST00000689525.1:ENST00000691397.1:ENST00000688405.1:ENST00000687994.1:ENST00000484897.4:ENST00000685013.1:ENST00000685490.1:ENST00000462186.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	71	2	2.22268	3.993225	5.76377	0.00770925	1.64089e-4	0.0784002	0.0116917
chr7	38376933	38377032	3308678	0	+	0.50505	(0.476,0.515]	chr7	307322	15	EXON_LNCRNA	EXON_LNCRNA	TRG-AS1	ENSG00000281103.3	ENST00000629357.1:ENST00000661780.1	lncRNA	lncRNA	lncRNA	lncRNA	1	50	2	2.28264	3.993225	5.70381	0.0534132	1.75496e-4	0.179876	0.01216
chr12	64415489	64415577	5152992	0	+	0.488636	(0.476,0.515]	chr12	487733	1	INTRON	INTRON	XPOT	ENSG00000184575.12	ENST00000332707.10:ENST00000540203.5:ENST00000400935.2	protein_coding	protein_coding	protein_coding	protein_coding	2	103	2	3.33416	3.99299	4.65182	0.00230489	1.43061e-6	0.0428247	7.16122e-4
chr8	90473735	90473835	3794839	0	+	0.25	[0,0.28]	chr8	351816	160	INTRON	INTRON	LINC00534	ENSG00000253394.7	ENST00000655523.1:ENST00000658299.1:ENST00000663329.1:ENST00000655219.1:ENST00000662692.1:ENST00000667296.1:ENST00000667565.1:ENST00000653734.1:ENST00000654785.1:ENST00000524361.5:ENST00000668745.1:ENST00000671657.1	lncRNA	lncRNA	lncRNA	lncRNA	1	60	2	2.54624	3.99296	5.43968	0.0388449	0.00113119	0.143072	0.0308465
chr3	129264773	129264865	1499290	0	+	0.467391	(0.44,0.476]	chr3	156593	4	INTRON	INTRON	COPG1	ENSG00000181789.14	ENST00000314797.10:ENST00000515725.5:ENST00000504547.1:ENST00000513410.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	44	2	3.08591	3.9929550000000003	4.9	0.00481262	0.00423315	0.0638089	0.0572185
chr6	36479911	36480011	2854293	0	+	0.46	(0.44,0.476]	chr6	269744	2	SS5_PROX	SS5_PROX:INTRON	KCTD20	ENSG00000112078.14	ENST00000536244.5:ENST00000373731.7:ENST00000474988.5:ENST00000481911.5:ENST00000449081.6:ENST00000265344.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	44	2	3.08591	3.9929550000000003	4.9	0.00481262	0.00423315	0.0638089	0.0572185
chr17	63754032	63754132	6811776	0	-	0.48	(0.476,0.515]	chr17	673151	2	SS5_PROX	SS5_PROX:INTRON	CCDC47	ENSG00000108588.15	ENST00000225726.10:ENST00000403162.7:ENST00000582252.1:ENST00000582331.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	131	2	3.19781	3.992935	4.78806	4.3655e-4	5.64248e-7	0.0191798	4.03907e-4
chr2	32381486	32381585	731024	0	+	0.454545	(0.44,0.476]	chr2	84286	8	INTRON	INTRON	BIRC6	ENSG00000115760.15	ENST00000421745.7:ENST00000648282.1	protein_coding	protein_coding	protein_coding	protein_coding	1	44	2	2.9586	3.9928150000000002	5.02703	0.00758318	0.00278015	0.0773151	0.0469265
chr15	25338840	25338939	6120806	0	-	0.262626	[0,0.28]	chr15	582827	53	UTR3	UTR3:EXON_MRNA	UBE3A	ENSG00000114062.22	ENST00000648336.2:ENST00000438097.6:ENST00000635914.1:ENST00000638155.1:ENST00000637886.1:ENST00000638011.1:ENST00000636667.1:ENST00000649550.1:ENST00000650110.1:ENST00000630424.2	protein_coding	protein_coding	protein_coding	protein_coding	1	60	2	2.73384	3.99281	5.25178	0.0246308	0.0022031	0.12011	0.0435144
chr16	23482230	23482326	6464291	0	-	0.385417	(0.378,0.408]	chr16	623854	11	INTRON	INTRON	GGA2	ENSG00000103365.15	ENST00000309859.8:ENST00000567468.5	protein_coding	protein_coding	protein_coding	protein_coding	3	72	2	2.31181	3.9925949999999997	5.67338	0.00548372	3.05145e-4	0.0671431	0.0161236
chr6	169657930	169658030	3266660	0	-	0.49	(0.476,0.515]	chr6	303170	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	WDR27	ENSG00000184465.16	ENST00000448612.6:ENST00000648472.1:ENST00000423258.5:ENST00000647790.1:ENST00000546525.5:ENST00000441385.2:ENST00000467418.1:ENST00000647873.1:ENST00000649303.1:ENST00000647889.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	98	2	1.91202	3.99249	6.07296	0.00593312	2.96173e-5	0.0696183	0.00451038
chr8	140218902	140219000	4072938	0	-	0.438776	(0.408,0.44]	chr8	370050	25	INTRON	INTRON	TRAPPC9	ENSG00000167632.18	ENST00000648948.2:ENST00000438773.4:ENST00000520857.5:ENST00000521667.5:ENST00000517667.5:ENST00000520532.5:ENST00000518839.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	50	2	2.2957	3.99248	5.68926	0.0516458	2.2853e-4	0.176696	0.0138641
chr15	82646521	82646621	6248501	0	-	0.65	(0.57,1]	chr15	596292	1	SS5_PROX	SS5_PROX:INTRON	CPEB1	ENSG00000214575.10	ENST00000684509.1:ENST00000615198.4:ENST00000620182.4:ENST00000617522.4:ENST00000569257.5:ENST00000567678.1:ENST00000566716.1:ENST00000563519.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	48	2	2.1643	3.9923699999999998	5.82044	0.00941704	1.81133e-6	0.0861183	9.08125e-4
chr11	108050466	108050566	4856149	0	+	0.5	(0.476,0.515]	chr11	452888	4	SS5_PROX	SS5_PROX:INTRON	CUL5	ENSG00000166266.14	ENST00000393094.7:ENST00000532064.5:ENST00000531427.5:ENST00000532782.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	44	2	3.01197	3.99225	4.97253	0.00633162	0.00311573	0.0722266	0.0498063
chr9	124742242	124742342	4348925	0	-	0.5	(0.476,0.515]	chr9	399261	85	INTRON	INTRON	NR6A1	ENSG00000148200.17	ENST00000487099.7:ENST00000373584.7:ENST00000416460.6:ENST00000344523.8	protein_coding	protein_coding	protein_coding	protein_coding	1	44	2	3.01197	3.99225	4.97253	0.00633162	0.00311573	0.0722266	0.0498063
chr16	91361	91452	6425278	0	-	0.450549	(0.44,0.476]	chr16	617319	4	INTRON	INTRON	NPRL3	ENSG00000103148.17	ENST00000611875.5:ENST00000622194.4:ENST00000621703.4:ENST00000399953.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	88	2	2.15136	3.9922199999999997	5.83308	0.0061794	2.77366e-5	0.0677395	0.00415129
chr1	32936714	32936805	416261	0	-	0.340659	(0.32,0.35]	chr1	50261	4	UTR3	UTR3:EXON_MRNA	RNF19B	ENSG00000116514.17	ENST00000373456.11:ENST00000235150.5:ENST00000356990.9	protein_coding	protein_coding	protein_coding	protein_coding	1	48	2	3.0247	3.9922050000000002	4.95971	0.00671684	0.00663522	0.0738715	0.0703181
chr12	53673313	53673408	5329434	0	-	0.336842	(0.32,0.35]	chr12	508438	8	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	ATP5MC2	ENSG00000135390.21	ENST00000673498.1:ENST00000394349.9:ENST00000552242.5:ENST00000495596.5:ENST00000549164.5:ENST00000338662.6:ENST00000549748.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	48	2	3.0247	3.9922050000000002	4.95971	0.00671684	0.00663522	0.0738715	0.0703181
chr2	24815196	24815296	712312	0	+	0.33	(0.32,0.35]	chr2	82375	3	SS3_PROX	SS3_PROX:INTRON	CENPO	ENSG00000138092.11	ENST00000473706.5:ENST00000491031.5:ENST00000380834.7:ENST00000260662.2:ENST00000498362.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	48	2	3.0247	3.9922050000000002	4.95971	0.00671684	0.00663522	0.0738715	0.0703181
chr7	77722922	77723022	3343334	0	+	0.34	(0.32,0.35]	chr7	311432	252	INTRON	INTRON	RSBN1L	ENSG00000187257.16	ENST00000334955.13:ENST00000445288.5	protein_coding	protein_coding	protein_coding	protein_coding	1	48	2	3.0247	3.9922050000000002	4.95971	0.00671684	0.00663522	0.0738715	0.0703181
chr12	112086488	112086587	5415200	0	-	0.222222	[0,0.28]	chr12	517230	50	INTRON	INTRON	NAA25	ENSG00000111300.10	ENST00000261745.9:ENST00000552527.5:ENST00000549711.5:ENST00000551858.1:ENST00000547133.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	83	2	2.45904	3.992115	5.52519	0.0137145	8.21427e-4	0.0949306	0.0261674
chr16	21180326	21180423	6318909	0	+	0.494845	(0.476,0.515]	chr16	604897	9	UTR3	UTR3:EXON_MRNA	LDAF1	ENSG00000011638.11	ENST00000233047.9:ENST00000261388.7:ENST00000573688.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	59	2	2.48551	3.99209	5.49867	0.00756632	4.28561e-4	0.0773151	0.0189958
chr2	229902147	229902246	1341465	0	-	0.484848	(0.476,0.515]	chr2	140462	9	INTRON	INTRON	TRIP12	ENSG00000153827.14	ENST00000675453.1:ENST00000675903.1:ENST00000283943.9:ENST00000675423.1:ENST00000389044.8:ENST00000389045.7:ENST00000479037.5:ENST00000409677.5:ENST00000435716.5:ENST00000428959.5:ENST00000430954.5:ENST00000343290.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	59	2	2.48551	3.99209	5.49867	0.00756632	4.28561e-4	0.0773151	0.0189958
chr7	111414994	111415094	3622636	0	-	0.34	(0.32,0.35]	chr7	337108	222	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000452895.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding	1	48	2	2.90786	3.992075	5.07629	0.00993008	0.00468114	0.0877296	0.0600108
chr1	8475303	8475403	370342	0	-	0.52	(0.515,0.57]	chr1	43466	89	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000377464.5:ENST00000400907.6:ENST00000656437.1:ENST00000464972.5:ENST00000659924.1:ENST00000480342.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	20	2	3.89856	3.99197	4.08538	0.0280943	0.0253843	0.137011	0.12011
chr1	19304586	19304686	387340	0	-	0.54	(0.515,0.57]	chr1	46302	2	SS3_PROX	SS3_PROX:INTRON	AKR7A2	ENSG00000053371.13	ENST00000235835.8:ENST00000330072.9:ENST00000489286.5:ENST00000481966.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	20	2	3.89856	3.99197	4.08538	0.0280943	0.0253843	0.137011	0.12011
chr1	25988627	25988727	404937	0	-	0.53	(0.515,0.57]	chr1	48620	3	SS3_PROX	SS3_PROX:INTRON	PAFAH2	ENSG00000158006.14	ENST00000374282.8:ENST00000374284.5:ENST00000493892.5:ENST00000464540.1:ENST00000439092.6:ENST00000441420.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	20	2	3.89856	3.99197	4.08538	0.0280943	0.0253843	0.137011	0.12011
chr1	31313129	31313228	61322	0	+	0.535354	(0.515,0.57]	chr1	7827	26	INTRON	INTRON	ZCCHC17	ENSG00000121766.16	ENST00000618216.4:ENST00000546109.5:ENST00000616393.4:ENST00000616859.4:ENST00000615916.4:ENST00000479629.5:ENST00000373714.5:ENST00000344147.10:ENST00000627541.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	20	2	3.89856	3.99197	4.08538	0.0280943	0.0253843	0.137011	0.12011
chr1	201996818	201996909	292652	0	+	0.516484	(0.515,0.57]	chr1	33714	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RNPEP	ENSG00000176393.11	ENST00000481780.5:ENST00000295640.9:ENST00000367286.7:ENST00000487116.5:ENST00000492587.5:ENST00000471105.5:ENST00000447312.5:ENST00000478617.5:ENST00000479726.5:ENST00000492849.5:ENST00000449524.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	20	2	3.89856	3.99197	4.08538	0.0280943	0.0253843	0.137011	0.12011
chr10	94589819	94589912	4500074	0	+	0.516129	(0.515,0.57]	chr10	414295	11	INTRON	INTRON	HELLS:ENSG00000244332	ENSG00000119969.15:ENSG00000244332.1	ENST00000239026.10:ENST00000371332.8:ENST00000348459.10:ENST00000394036.5:ENST00000394045.5:ENST00000432120.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	0	20	2	3.89856	3.99197	4.08538	0.0280943	0.0253843	0.137011	0.12011
chr12	45746860	45746960	5122887	0	+	0.53	(0.515,0.57]	chr12	483299	152	INTRON	INTRON	ARID2	ENSG00000189079.17	ENST00000334344.11:ENST00000427628.5:ENST00000426776.5:ENST00000422737.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	20	2	3.89856	3.99197	4.08538	0.0280943	0.0253843	0.137011	0.12011
chr12	110341571	110341649	5226717	0	+	0.538462	(0.515,0.57]	chr12	495296	2	INTRON	INTRON	ATP2A2	ENSG00000174437.18	ENST00000308664.10:ENST00000539276.7:ENST00000377685.9:ENST00000548169.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	20	2	3.89856	3.99197	4.08538	0.0280943	0.0253843	0.137011	0.12011
chr13	114068926	114069026	5654234	0	-	0.53	(0.515,0.57]	chr13	538947	164	INTRON	INTRON	RASA3	ENSG00000185989.11	ENST00000334062.8	protein_coding	protein_coding	protein_coding	protein_coding	0	20	2	3.89856	3.99197	4.08538	0.0280943	0.0253843	0.137011	0.12011
chr14	90287535	90287625	5948326	0	-	0.555556	(0.515,0.57]	chr14	564811	7	INTRON	INTRON	NRDE2	ENSG00000119720.18	ENST00000354366.8:ENST00000556189.5:ENST00000553409.5:ENST00000555903.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	20	2	3.89856	3.99197	4.08538	0.0280943	0.0253843	0.137011	0.12011
chr15	82729803	82729902	6248571	0	-	0.535354	(0.515,0.57]	chr15	596309	20	INTRON	INTRON	ACTG1P17	ENSG00000259315.1	ENST00000560958.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	0	20	2	3.89856	3.99197	4.08538	0.0280943	0.0253843	0.137011	0.12011
chr17	40401381	40401481	6768191	0	-	0.53	(0.515,0.57]	chr17	665921	3	SS3_PROX	SS3_PROX:INTRON	TOP2A	ENSG00000131747.15	ENST00000423485.6	protein_coding	protein_coding	protein_coding	protein_coding	0	20	2	3.89856	3.99197	4.08538	0.0280943	0.0253843	0.137011	0.12011
chr18	13084825	13084924	6877541	0	+	0.555556	(0.515,0.57]	chr18	681498	113	INTRON	INTRON	CEP192	ENSG00000101639.19	ENST00000325971.12:ENST00000506447.5:ENST00000513432.5:ENST00000511820.6:ENST00000510237.5:ENST00000589993.5:ENST00000507254.6:ENST00000540847.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	20	2	3.89856	3.99197	4.08538	0.0280943	0.0253843	0.137011	0.12011
chr19	5056147	5056247	7004295	0	+	0.52	(0.515,0.57]	chr19	694835	81	INTRON	INTRON	KDM4B	ENSG00000127663.15	ENST00000159111.9:ENST00000611640.4:ENST00000381759.8:ENST00000536461.5:ENST00000592175.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	20	2	3.89856	3.99197	4.08538	0.0280943	0.0253843	0.137011	0.12011
chr19	42219286	42219381	7186099	0	-	0.526316	(0.515,0.57]	chr19	727082	17	INTRON	INTRON	DEDD2	ENSG00000160570.14	ENST00000595337.5:ENST00000593561.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	20	2	3.89856	3.99197	4.08538	0.0280943	0.0253843	0.137011	0.12011
chr19	46695114	46695211	7194740	0	-	0.536082	(0.515,0.57]	chr19	728810	6	INTRON	INTRON	PRKD2	ENSG00000105287.13	ENST00000601806.5:ENST00000291281.9:ENST00000433867.5:ENST00000600194.5:ENST00000599019.5:ENST00000597589.5:ENST00000595515.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	20	2	3.89856	3.99197	4.08538	0.0280943	0.0253843	0.137011	0.12011
chr2	27778639	27778736	719022	0	+	0.546392	(0.515,0.57]	chr2	83602	38	INTRON	INTRON	MRPL33	ENSG00000243147.8	ENST00000379666.7:ENST00000296102.8:ENST00000448427.1:ENST00000483992.5:ENST00000476552.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	20	2	3.89856	3.99197	4.08538	0.0280943	0.0253843	0.137011	0.12011
chr2	70078076	70078173	1151171	0	-	0.536082	(0.515,0.57]	chr2	122925	3	INTRON	INTRON	PCBP1-AS1	ENSG00000179818.16	ENST00000419542.5:ENST00000682294.1:ENST00000684630.1:ENST00000630975.3:ENST00000435880.6:ENST00000629339.3:ENST00000667874.1:ENST00000628659.2:ENST00000628308.2:ENST00000626515.2:ENST00000625447.2:ENST00000628305.2:ENST00000625625.2:ENST00000625864.2:ENST00000629084.2:ENST00000629603.2:ENST00000625215.2:ENST00000627189.2:ENST00000629836.2:ENST00000626898.2:ENST00000628883.2:ENST00000629533.2:ENST00000627181.2:ENST00000630214.2:ENST00000627918.2:ENST00000628374.2:ENST00000627327.2:ENST00000626495.2:ENST00000629605.2:ENST00000626370.2:ENST00000626842.2:ENST00000630457.2:ENST00000629184.2:ENST00000628551.2:ENST00000630746.2:ENST00000627398.2:ENST00000457076.5:ENST00000625783.2:ENST00000625490.2:ENST00000627050.2:ENST00000630759.2:ENST00000628667.2:ENST00000626632.2:ENST00000631110.2:ENST00000626609.2:ENST00000629506.2:ENST00000630985.2:ENST00000413436.5:ENST00000628147.2:ENST00000631107.2:ENST00000629415.2:ENST00000418564.5:ENST00000415222.5:ENST00000628322.2:ENST00000665708.1:ENST00000655086.1:ENST00000420309.6:ENST00000627487.3:ENST00000670036.1:ENST00000655096.1:ENST00000685127.1:ENST00000684907.1:ENST00000685079.1:ENST00000687866.1:ENST00000692564.1:ENST00000686517.1:ENST00000689138.1:ENST00000688056.1:ENST00000692333.1:ENST00000688045.1:ENST00000657291.1:ENST00000691987.1:ENST00000664483.1:ENST00000601431.6:ENST00000685803.1:ENST00000690200.1:ENST00000686800.1:ENST00000684857.1:ENST00000627037.2:ENST00000688473.1:ENST00000456161.5:ENST00000627074.2:ENST00000419963.5:ENST00000625227.2:ENST00000599673.5:ENST00000629407.2:ENST00000418308.5:ENST00000630283.2:ENST00000629178.2:ENST00000627542.2:ENST00000626574.2:ENST00000596028.5:ENST00000629485.2:ENST00000630685.2:ENST00000452431.5:ENST00000629374.2:ENST00000423402.5:ENST00000411429.5:ENST00000629188.2:ENST00000434781.5:ENST00000626162.2:ENST00000654878.1:ENST00000659586.1:ENST00000457770.6:ENST00000415742.5:ENST00000627540.2:ENST00000628263.2:ENST00000657575.2:ENST00000689275.1:ENST00000687961.1:ENST00000416395.6:ENST00000692733.1:ENST00000654336.1:ENST00000686055.1:ENST00000626509.3:ENST00000425601.6:ENST00000653064.1:ENST00000656326.1:ENST00000668711.1:ENST00000665172.1:ENST00000630520.3:ENST00000663209.1:ENST00000659305.1:ENST00000654601.1:ENST00000663375.1:ENST00000654958.1:ENST00000665838.1:ENST00000653606.1:ENST00000659941.1:ENST00000669583.1:ENST00000660903.1:ENST00000653596.1:ENST00000656308.1:ENST00000449178.6:ENST00000625955.3:ENST00000655140.1:ENST00000661989.1:ENST00000664419.1:ENST00000670785.1:ENST00000661703.1:ENST00000658454.1:ENST00000664049.1:ENST00000655058.1:ENST00000366234.7:ENST00000625518.2:ENST00000425333.5:ENST00000429599.6:ENST00000432604.5:ENST00000421843.5:ENST00000458686.5:ENST00000421255.5:ENST00000413069.5:ENST00000685037.1:ENST00000458698.6:ENST00000670786.1:ENST00000657164.1:ENST00000665264.1:ENST00000413791.5:ENST00000690464.1:ENST00000690924.1:ENST00000688311.1:ENST00000691287.1:ENST00000655481.1:ENST00000655420.1:ENST00000612202.5:ENST00000666167.1:ENST00000664958.1:ENST00000416068.6:ENST00000653289.1:ENST00000653811.1:ENST00000661863.1:ENST00000659531.1:ENST00000667307.1:ENST00000437019.2:ENST00000666074.1:ENST00000654716.1:ENST00000439670.6:ENST00000669812.1:ENST00000660404.2:ENST00000656852.1:ENST00000670845.1:ENST00000669570.1:ENST00000422515.6:ENST00000653114.1:ENST00000667952.1:ENST00000662224.1:ENST00000664533.1:ENST00000670313.1:ENST00000626558.3:ENST00000670974.1:ENST00000664014.1:ENST00000668191.1:ENST00000609543.6:ENST00000664754.1:ENST00000662103.1:ENST00000669896.1:ENST00000629943.3:ENST00000625788.3:ENST00000663033.1:ENST00000442040.5:ENST00000601396.5:ENST00000629825.2:ENST00000444410.5:ENST00000444320.5:ENST00000630377.2:ENST00000662425.1:ENST00000688278.1:ENST00000596573.5:ENST00000594548.5:ENST00000437456.5:ENST00000595459.5:ENST00000415060.6:ENST00000596665.5:ENST00000625257.2:ENST00000627528.2:ENST00000630206.2:ENST00000628102.2:ENST00000439892.6:ENST00000609075.5:ENST00000628757.2	lncRNA	lncRNA	lncRNA	lncRNA	0	20	2	3.89856	3.99197	4.08538	0.0280943	0.0253843	0.137011	0.12011
chr2	86734451	86734551	823619	0	+	0.52	(0.515,0.57]	chr2	92028	133	INTRON	INTRON	RMND5A	ENSG00000153561.13	ENST00000283632.5	protein_coding	protein_coding	protein_coding	protein_coding	0	20	2	3.89856	3.99197	4.08538	0.0280943	0.0253843	0.137011	0.12011
chr21	43924008	43924108	7414381	0	+	0.52	(0.515,0.57]	chr21	755702	72	INTRON	INTRON	AGPAT3	ENSG00000160216.21	ENST00000291572.13:ENST00000448287.5:ENST00000398061.5:ENST00000327505.6:ENST00000445582.5	protein_coding	protein_coding	protein_coding	protein_coding	0	20	2	3.89856	3.99197	4.08538	0.0280943	0.0253843	0.137011	0.12011
chr3	42641125	42641222	1406395	0	+	0.536082	(0.515,0.57]	chr3	147712	10	INTRON	INTRON	NKTR	ENSG00000114857.19	ENST00000429888.5:ENST00000232978.13	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	20	2	3.89856	3.99197	4.08538	0.0280943	0.0253843	0.137011	0.12011
chr3	43586259	43586359	1675083	0	-	0.52	(0.515,0.57]	chr3	171020	54	INTRON	INTRON	ANO10	ENSG00000160746.13	ENST00000292246.8:ENST00000350459.8:ENST00000396091.7:ENST00000414522.6:ENST00000451430.6:ENST00000427171.5:ENST00000428472.5	protein_coding	protein_coding	protein_coding	protein_coding	0	20	2	3.89856	3.99197	4.08538	0.0280943	0.0253843	0.137011	0.12011
chr3	46947245	46947345	1679735	0	-	0.53	(0.515,0.57]	chr3	171431	58	INTRON	INTRON	CCDC12	ENSG00000160799.12	ENST00000425441.5:ENST00000683445.1:ENST00000292314.6:ENST00000605358.5:ENST00000488069.5:ENST00000603885.5:ENST00000446836.5:ENST00000494655.5:ENST00000604164.5:ENST00000604181.1:ENST00000605875.1:ENST00000460035.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	20	2	3.89856	3.99197	4.08538	0.0280943	0.0253843	0.137011	0.12011
chr3	51667182	51667281	1427362	0	+	0.565657	(0.515,0.57]	chr3	150583	39	UTR3	UTR3:EXON_MRNA:INTRON	RAD54L2:TEX264	ENSG00000164080.14:ENSG00000164081.13	ENST00000684192.1:ENST00000409535.6:ENST00000419358.5	protein_coding	protein_coding	protein_coding	protein_coding	0	20	2	3.89856	3.99197	4.08538	0.0280943	0.0253843	0.137011	0.12011
chr3	129737421	129737521	1816531	0	-	0.53	(0.515,0.57]	chr3	182597	488	INTRON	INTRON	TMCC1	ENSG00000172765.18	ENST00000393238.8:ENST00000426664.6:ENST00000648771.1:ENST00000505616.5	protein_coding	protein_coding	protein_coding	protein_coding	0	20	2	3.89856	3.99197	4.08538	0.0280943	0.0253843	0.137011	0.12011
chr3	195660756	195660856	1593450	0	+	0.54	(0.515,0.57]	chr3	165006	22	INTRON	INTRON	MUC20-OT1	ENSG00000242086.8	ENST00000457233.5:ENST00000429897.5:ENST00000452844.5:ENST00000453324.5:ENST00000445430.5:ENST00000425425.1	lncRNA	lncRNA	lncRNA	lncRNA	0	20	2	3.89856	3.99197	4.08538	0.0280943	0.0253843	0.137011	0.12011
chr4	1315196	1315296	1909769	0	+	0.55	(0.515,0.57]	chr4	191495	4	SS3_PROX	SS3_PROX:INTRON	MAEA	ENSG00000090316.16	ENST00000505177.6:ENST00000513301.5:ENST00000303400.9:ENST00000264750.10:ENST00000503653.5:ENST00000512308.5:ENST00000502558.5:ENST00000509254.5:ENST00000514708.5:ENST00000503693.1:ENST00000509531.5:ENST00000510794.5:ENST00000512842.5:ENST00000505839.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	20	2	3.89856	3.99197	4.08538	0.0280943	0.0253843	0.137011	0.12011
chr4	88775405	88775504	2200134	0	-	0.535354	(0.515,0.57]	chr4	215930	70	INTRON	INTRON	FAM13A	ENSG00000138640.15	ENST00000395002.6:ENST00000264344.10:ENST00000503556.5:ENST00000511976.5:ENST00000508369.5:ENST00000513837.5:ENST00000504836.5:ENST00000507352.1:ENST00000502459.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	20	2	3.89856	3.99197	4.08538	0.0280943	0.0253843	0.137011	0.12011
chr7	66935758	66935858	3326379	0	+	0.52	(0.515,0.57]	chr7	309339	45	INTRON	INTRON	TMEM248	ENSG00000106609.16	ENST00000341567.8:ENST00000607045.5:ENST00000433271.6:ENST00000413593.5:ENST00000424964.6:ENST00000418375.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	20	2	3.89856	3.99197	4.08538	0.0280943	0.0253843	0.137011	0.12011
chr7	74182454	74182552	3332307	0	+	0.530612	(0.515,0.57]	chr7	310032	27	INTRON	INTRON	EIF4H	ENSG00000106682.16	ENST00000678438.1:ENST00000489484.5:ENST00000677998.1:ENST00000495187.2:ENST00000265753.13:ENST00000353999.6:ENST00000677570.1:ENST00000677681.1:ENST00000678815.1:ENST00000679266.1:ENST00000679287.1:ENST00000479338.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	20	2	3.89856	3.99197	4.08538	0.0280943	0.0253843	0.137011	0.12011
chr7	99036303	99036391	3582048	0	-	0.534091	(0.515,0.57]	chr7	333610	2	INTRON	INTRON	SMURF1	ENSG00000198742.10	ENST00000361368.7:ENST00000361125.1	protein_coding	protein_coding	protein_coding	protein_coding	0	20	2	3.89856	3.99197	4.08538	0.0280943	0.0253843	0.137011	0.12011
chr8	128021113	128021213	3862345	0	+	0.55	(0.515,0.57]	chr8	355521	40	INTRON	INTRON	PVT1	ENSG00000249859.13	ENST00000667305.1:ENST00000690350.1:ENST00000653522.1:ENST00000661830.1:ENST00000657289.1:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000657211.1:ENST00000653845.1:ENST00000651587.1:ENST00000692980.1:ENST00000654324.1:ENST00000657693.1:ENST00000666080.1:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000662410.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000657356.1:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000667714.1:ENST00000654105.1:ENST00000664995.1:ENST00000670714.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000668123.1:ENST00000666776.1:ENST00000659912.1:ENST00000670532.1:ENST00000523068.2:ENST00000671088.1:ENST00000663461.1:ENST00000513868.6:ENST00000692433.1:ENST00000523190.7:ENST00000685606.1:ENST00000690788.1:ENST00000685634.1:ENST00000653990.1:ENST00000655783.1:ENST00000656411.1:ENST00000664742.1:ENST00000655099.1:ENST00000662709.1:ENST00000512617.7:ENST00000660122.1:ENST00000666452.1:ENST00000659666.1:ENST00000659892.1:ENST00000521600.5:ENST00000522875.5:ENST00000653497.1:ENST00000668098.1:ENST00000659106.1:ENST00000666147.1:ENST00000658350.1:ENST00000656999.1:ENST00000664610.1:ENST00000671092.1:ENST00000653853.1	lncRNA	lncRNA	lncRNA	lncRNA	0	20	2	3.89856	3.99197	4.08538	0.0280943	0.0253843	0.137011	0.12011
chr8	129951464	129951564	4063280	0	-	0.52	(0.515,0.57]	chr8	369838	20	INTRON	INTRON	CYRIB	ENSG00000153310.21	ENST00000694912.1:ENST00000523288.5:ENST00000519110.5:ENST00000401979.6:ENST00000523509.5:ENST00000517654.5:ENST00000519142.5:ENST00000518879.5:ENST00000522702.5:ENST00000521223.5:ENST00000518283.5:ENST00000523993.5:ENST00000519020.5:ENST00000518167.5:ENST00000517672.5:ENST00000522361.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	20	2	3.89856	3.99197	4.08538	0.0280943	0.0253843	0.137011	0.12011
chr9	85948871	85948971	4149004	0	+	0.55	(0.515,0.57]	chr9	378402	62	INTRON	INTRON	NAA35	ENSG00000135040.16	ENST00000361671.10:ENST00000416045.4:ENST00000376040.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	20	2	3.89856	3.99197	4.08538	0.0280943	0.0253843	0.137011	0.12011
chr9	133347336	133347424	4370219	0	-	0.534091	(0.515,0.57]	chr9	402124	3	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	MED22	ENSG00000148297.16	ENST00000343730.10:ENST00000610672.4:ENST00000610888.4:ENST00000614493.4:ENST00000471524.1:ENST00000371999.5:ENST00000446777.5:ENST00000494177.6:ENST00000457204.2:ENST00000482295.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	20	2	3.89856	3.99197	4.08538	0.0280943	0.0253843	0.137011	0.12011
chr19	2233740	2233839	7115721	0	-	0.616162	(0.57,1]	chr19	715285	7	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	PLEKHJ1	ENSG00000104886.12	ENST00000587394.6:ENST00000587962.6:ENST00000326631.7:ENST00000591099.6:ENST00000589097.6:ENST00000588450.1:ENST00000589791.5:ENST00000588633.1:ENST00000588545.2:ENST00000586608.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	12	249	2	3.78524	3.9917599999999998	4.19828	2.70827e-9	4.43825e-11	1.4777e-5	5.88809e-7
chr19	11120722	11120822	7017150	0	+	0.45	(0.44,0.476]	chr19	697495	2	SS5_PROX	SS5_PROX:INTRON	LDLR	ENSG00000130164.14	ENST00000557933.5:ENST00000558518.6:ENST00000545707.5:ENST00000535915.5:ENST00000455727.6:ENST00000558013.5:ENST00000252444.9	protein_coding	protein_coding	protein_coding	protein_coding	11	393	2	3.52168	3.991735	4.46179	7.25115e-8	3.05287e-8	1.17517e-4	6.30561e-5
chr1	233617008	233617107	338562	0	+	0.323232	(0.32,0.35]	chr1	39406	21	INTRON	INTRON	KCNK1	ENSG00000135750.15	ENST00000366621.8	protein_coding	protein_coding	protein_coding	protein_coding	5	99	2	2.07821	3.9916799999999997	5.90515	0.00473999	2.30541e-4	0.0634645	0.013917
chr7	75459210	75459310	3558659	0	-	0.38	(0.378,0.408]	chr7	331545	166	INTRON	INTRON	POM121C	ENSG00000272391.6	ENST00000615331.5:ENST00000398379.2	protein_coding	protein_coding	protein_coding	protein_coding	2	60	2	2.70298	3.991655	5.28033	0.00325723	0.00143651	0.0524329	0.0340925
chr20	1373341	1373441	7305172	0	-	0.41	(0.408,0.44]	chr20	743676	2	SS3_PROX	SS3_PROX:INTRON	FKBP1A	ENSG00000088832.18	ENST00000677937.1:ENST00000439640.5:ENST00000618612.5:ENST00000400137.9:ENST00000460490.2:ENST00000678136.1:ENST00000677335.1:ENST00000474657.6:ENST00000381719.8:ENST00000678408.1:ENST00000381724.8:ENST00000381715.4:ENST00000678325.1:ENST00000612074.5:ENST00000474726.5:ENST00000677078.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	44	2	3.02513	3.99165	4.95817	0.0059965	0.00372419	0.0700606	0.0535094
chr4	56494656	56494756	1963208	0	+	0.43	(0.408,0.44]	chr4	197005	27	INTRON	INTRON	SRP72	ENSG00000174780.17	ENST00000642900.1:ENST00000510663.6:ENST00000647432.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	44	2	3.02513	3.99165	4.95817	0.0059965	0.00372419	0.0700606	0.0535094
chr7	75067586	75067684	3557187	0	-	0.418367	(0.408,0.44]	chr7	331254	4	INTRON	INTRON	RCC1L	ENSG00000274523.5	ENST00000614461.4:ENST00000610322.5:ENST00000616051.1:ENST00000618035.4:ENST00000615250.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	44	2	3.02513	3.99165	4.95817	0.0059965	0.00372419	0.0700606	0.0535094
chr10	3082641	3082741	4381679	0	+	0.38	(0.378,0.408]	chr10	404060	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PFKP	ENSG00000067057.18	ENST00000607886.5:ENST00000381125.9:ENST00000381075.7:ENST00000678206.1:ENST00000677351.1:ENST00000678089.1:ENST00000676796.1:ENST00000421751.1:ENST00000407806.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	60	2	2.51464	3.991485	5.46833	0.00684341	7.05018e-4	0.0748032	0.024224
chr1	163332283	163332382	239637	0	+	0.262626	[0,0.28]	chr1	28870	30	INTRON	INTRON	NUF2	ENSG00000143228.13	ENST00000534289.5:ENST00000450453.6:ENST00000524800.5:ENST00000367900.7:ENST00000442820.5:ENST00000271452.8:ENST00000490881.5:ENST00000497990.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	56	2	3.2223	3.99097	4.75964	0.0232081	0.00422777	0.118148	0.0595466
chr6	53340138	53340238	3108102	0	-	0.18	[0,0.28]	chr6	291051	29	INTRON	INTRON	ELOVL5	ENSG00000012660.14	ENST00000370918.8:ENST00000542638.5:ENST00000304434.11:ENST00000485336.5:ENST00000465983.5:ENST00000486973.1:ENST00000370913.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	56	2	3.2223	3.99097	4.75964	0.0232081	0.00422777	0.118148	0.0595466
chr16	21900373	21900469	6462273	0	-	0.489583	(0.476,0.515]	chr16	623555	9	INTRON	INTRON	SMG1P4	ENSG00000185710.9	ENST00000523028.5	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	1	44	2	3.07422	3.990915	4.90761	0.00506023	0.00386428	0.0646039	0.0542786
chr2	169600170	169600269	906629	0	+	0.484848	(0.476,0.515]	chr2	100021	71	INTRON	INTRON	PPIG	ENSG00000138398.17	ENST00000678088.1:ENST00000677392.1:ENST00000433207.6:ENST00000679324.1:ENST00000414307.6:ENST00000676508.1:ENST00000260970.8:ENST00000678695.1:ENST00000409714.7:ENST00000530152.5:ENST00000677750.1:ENST00000676557.1:ENST00000678721.1:ENST00000462903.6:ENST00000676756.1:ENST00000679107.1:ENST00000678499.1:ENST00000678638.1:ENST00000448752.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	44	2	3.07422	3.990915	4.90761	0.00506023	0.00386428	0.0646039	0.0542786
chr12	131940329	131940421	5250118	0	+	0.478261	(0.476,0.515]	chr12	499267	7	INTRON	INTRON	PUS1	ENSG00000177192.14	ENST00000443358.6:ENST00000322060.9:ENST00000376649.8:ENST00000542167.2:ENST00000535067.5:ENST00000537484.1	protein_coding	protein_coding	protein_coding	protein_coding	1	44	2	2.94692	3.9907899999999996	5.03466	0.00794331	0.00252065	0.0797304	0.0446195
chr3	197881109	197881207	1598647	0	+	0.510204	(0.476,0.515]	chr3	165685	5	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	LRCH3	ENSG00000186001.14	ENST00000438796.6:ENST00000428136.2:ENST00000425562.7:ENST00000441090.6:ENST00000414675.6:ENST00000433298.5:ENST00000476664.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	44	2	2.94692	3.9907899999999996	5.03466	0.00794331	0.00252065	0.0797304	0.0446195
chr4	128100213	128100312	2042991	0	+	0.515152	(0.476,0.515]	chr4	202884	15	INTRON	INTRON	LARP1B	ENSG00000138709.19	ENST00000512292.5:ENST00000326639.11:ENST00000508819.5:ENST00000394288.7:ENST00000432347.6:ENST00000649983.1:ENST00000650359.1:ENST00000648358.1:ENST00000507377.1	protein_coding	protein_coding	protein_coding	protein_coding	1	44	2	2.94692	3.9907899999999996	5.03466	0.00794331	0.00252065	0.0797304	0.0446195
chr6	24711565	24711662	3070648	0	-	0.350515	(0.35,0.378]	chr6	285352	23	INTRON	INTRON	C6orf62	ENSG00000112308.13	ENST00000378119.9:ENST00000378102.3	protein_coding	protein_coding	protein_coding	protein_coding	1	49	2	3.49967	3.990755	4.48184	0.0191702	9.80974e-4	0.108861	0.0287765
chr7	157223946	157224042	3454810	0	+	0.291667	(0.28,0.32]	chr7	322990	2	INTRON	INTRON	UBE3C	ENSG00000009335.18	ENST00000348165.10:ENST00000470408.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	68	2	2.38391	3.99053	5.59715	0.0122525	0.00123856	0.0969406	0.0322669
chr1	235417692	235417788	340181	0	+	0.375	(0.35,0.378]	chr1	39568	17	INTRON	INTRON	TBCE	ENSG00000285053.1:ENSG00000284770.2	ENST00000644055.1:ENST00000645655.1:ENST00000647428.1:ENST00000643418.1:ENST00000646624.1:ENST00000647186.1:ENST00000646528.1:ENST00000645351.1:ENST00000643410.1:ENST00000645205.1:ENST00000645836.1:ENST00000642503.1:ENST00000646281.1:ENST00000645069.1:ENST00000644680.1:ENST00000645578.1:ENST00000642431.1:ENST00000644604.1:ENST00000651186.1:ENST00000643125.1:ENST00000406207.5:ENST00000642463.1:ENST00000645899.1:ENST00000647233.1:ENST00000644578.1:ENST00000647418.1:ENST00000645372.1:ENST00000645582.1:ENST00000643994.1:ENST00000647407.1:ENST00000642610.2:ENST00000644037.1:ENST00000646463.1:ENST00000366601.8:ENST00000643524.1:ENST00000646536.1:ENST00000643142.1:ENST00000644838.1:ENST00000646286.1:ENST00000646186.1:ENST00000643615.1:ENST00000543662.4:ENST00000646848.1:ENST00000647332.1:ENST00000647489.1:ENST00000645551.1:ENST00000646821.1:ENST00000472011.6:ENST00000643238.1:ENST00000646104.1:ENST00000645662.1:ENST00000643993.1:ENST00000645964.1:ENST00000642339.1:ENST00000644217.1:ENST00000642372.1:ENST00000646929.1:ENST00000644265.1:ENST00000482230.6:ENST00000644910.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	51	2	2.47065	3.99042	5.51019	0.0386172	2.10803e-4	0.142656	0.0126882
chr15	28153728	28153828	6122303	0	-	0.43	(0.408,0.44]	chr15	583064	5	INTRON	INTRON	HERC2	ENSG00000128731.18	ENST00000261609.13:ENST00000650509.1:ENST00000569772.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	44	2	3.08738	3.9903250000000003	4.89327	0.00478231	0.00458906	0.0636201	0.0595107
chr1	32834462	32834561	66737	0	+	0.414141	(0.408,0.44]	chr1	8565	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	S100PBP	ENSG00000116497.18	ENST00000373476.5:ENST00000531123.5:ENST00000356689.7:ENST00000373475.10	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	21	2	3.97679	3.9903199999999996	4.00385	0.0454568	0.0299485	0.149888	0.142135
chr1	44904024	44904124	436959	0	-	0.44	(0.408,0.44]	chr1	52932	62	INTRON	INTRON	EIF2B3	ENSG00000070785.17	ENST00000620860.4:ENST00000360403.7:ENST00000439363.5:ENST00000372183.7	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	3.97679	3.9903199999999996	4.00385	0.0454568	0.0299485	0.149888	0.142135
chr1	120290921	120291021	203043	0	+	0.42	(0.408,0.44]	chr1	22366	125	INTRON	INTRON	ENSG00000274642	ENSG00000274642.1	ENST00000612320.1	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	0	21	2	3.97679	3.9903199999999996	4.00385	0.0454568	0.0299485	0.149888	0.142135
chr1	184904908	184905008	602357	0	-	0.44	(0.408,0.44]	chr1	71774	52	INTRON	INTRON	NIBAN1	ENSG00000135842.17	ENST00000367511.4	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	3.97679	3.9903199999999996	4.00385	0.0454568	0.0299485	0.149888	0.142135
chr11	835487	835550	4720753	0	+	0.412698	(0.408,0.44]	chr11	436529	2	SS5_PROX	SS5_PROX:INTRON	CD151	ENSG00000177697.19	ENST00000524748.6:ENST00000642413.1:ENST00000322008.9:ENST00000397421.5:ENST00000397420.9:ENST00000530155.5:ENST00000525718.6:ENST00000645878.1:ENST00000529810.5:ENST00000526693.5:ENST00000531999.5:ENST00000525868.5:ENST00000525333.5:ENST00000532045.6:ENST00000527341.5:ENST00000526661.5:ENST00000530726.5:ENST00000528011.2:ENST00000528867.5:ENST00000530320.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	21	2	3.97679	3.9903199999999996	4.00385	0.0454568	0.0299485	0.149888	0.142135
chr11	45943743	45943843	4943446	0	-	0.43	(0.408,0.44]	chr11	463286	41	INTRON	INTRON	PHF21A	ENSG00000135365.17	ENST00000676320.1:ENST00000527401.5:ENST00000323180.10:ENST00000530587.6:ENST00000693049.1:ENST00000692878.1:ENST00000690620.1:ENST00000418153.6:ENST00000525676.6:ENST00000532028.1:ENST00000689695.1:ENST00000527753.5:ENST00000534766.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	21	2	3.97679	3.9903199999999996	4.00385	0.0454568	0.0299485	0.149888	0.142135
chr12	54346511	54346611	5143918	0	+	0.44	(0.408,0.44]	chr12	485623	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	COPZ1	ENSG00000111481.10	ENST00000549043.5:ENST00000262061.7:ENST00000552218.5:ENST00000551962.5:ENST00000550171.5:ENST00000455864.6:ENST00000552362.5:ENST00000553231.5:ENST00000550027.5:ENST00000551412.5:ENST00000549116.5:ENST00000551779.5:ENST00000548281.5:ENST00000548753.1:ENST00000550713.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	21	2	3.97679	3.9903199999999996	4.00385	0.0454568	0.0299485	0.149888	0.142135
chr12	57836571	57836670	5340053	0	-	0.434343	(0.408,0.44]	chr12	511016	66	INTRON	INTRON	CTDSP2	ENSG00000175215.11	ENST00000398073.7:ENST00000548823.1:ENST00000547701.5:ENST00000551594.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	21	2	3.97679	3.9903199999999996	4.00385	0.0454568	0.0299485	0.149888	0.142135
chr12	120159015	120159115	5432874	0	-	0.44	(0.408,0.44]	chr12	519226	4	SS3_PROX	SS3_PROX:INTRON	GCN1	ENSG00000089154.11	ENST00000300648.7:ENST00000547369.5:ENST00000550471.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	21	2	3.97679	3.9903199999999996	4.00385	0.0454568	0.0299485	0.149888	0.142135
chr14	60784126	60784226	5737215	0	+	0.41	(0.408,0.44]	chr14	544884	303	INTRON	INTRON	MNAT1	ENSG00000020426.11	ENST00000261245.9:ENST00000556764.5:ENST00000539616.6:ENST00000553354.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	21	2	3.97679	3.9903199999999996	4.00385	0.0454568	0.0299485	0.149888	0.142135
chr16	11794819	11794919	6445682	0	-	0.43	(0.408,0.44]	chr16	620971	119	INTRON	INTRON	ZC3H7A	ENSG00000122299.12	ENST00000355758.9:ENST00000571198.5:ENST00000575170.1:ENST00000576018.5:ENST00000572781.5:ENST00000574995.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	21	2	3.97679	3.9903199999999996	4.00385	0.0454568	0.0299485	0.149888	0.142135
chr17	60630527	60630627	6644779	0	+	0.43	(0.408,0.44]	chr17	648940	1	SS5_PROX	SS5_PROX:INTRON	PPM1D	ENSG00000170836.13	ENST00000305921.8:ENST00000693102.1:ENST00000685212.1:ENST00000693196.1:ENST00000392995.7:ENST00000688505.1:ENST00000629650.3:ENST00000687355.1:ENST00000686064.1:ENST00000689445.1:ENST00000590418.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	21	2	3.97679	3.9903199999999996	4.00385	0.0454568	0.0299485	0.149888	0.142135
chr19	2005772	2005872	7114279	0	-	0.42	(0.408,0.44]	chr19	714993	23	INTRON	INTRON	BTBD2	ENSG00000133243.10	ENST00000255608.9:ENST00000589200.3:ENST00000590646.5:ENST00000587742.5:ENST00000588395.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	21	2	3.97679	3.9903199999999996	4.00385	0.0454568	0.0299485	0.149888	0.142135
chr2	53817397	53817497	779214	0	+	0.43	(0.408,0.44]	chr2	87740	1	SS3_PROX	SS3_PROX:INTRON	ERLEC1	ENSG00000068912.15	ENST00000688464.1:ENST00000689496.1:ENST00000688096.1:ENST00000687536.1:ENST00000685508.1:ENST00000690836.1:ENST00000689943.1:ENST00000692350.1:ENST00000693288.1:ENST00000684875.1:ENST00000688147.1:ENST00000692665.1:ENST00000692267.1:ENST00000689106.1:ENST00000689887.1:ENST00000691939.1:ENST00000692971.1:ENST00000690280.1:ENST00000691853.1:ENST00000692745.1:ENST00000689291.1:ENST00000690740.1:ENST00000688274.1:ENST00000693696.1:ENST00000685400.1:ENST00000689100.1:ENST00000687723.1:ENST00000686424.1:ENST00000691217.1:ENST00000185150.9:ENST00000691171.1:ENST00000692786.1:ENST00000378239.5:ENST00000405123.7:ENST00000687552.1:ENST00000689230.1:ENST00000684835.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	21	2	3.97679	3.9903199999999996	4.00385	0.0454568	0.0299485	0.149888	0.142135
chr2	58205721	58205821	1126389	0	-	0.43	(0.408,0.44]	chr2	120926	16	EXON_MRNA	EXON_MRNA:INTRON	FANCL	ENSG00000115392.13	ENST00000696400.1:ENST00000403295.8:ENST00000696492.1:ENST00000427708.7:ENST00000696314.1:ENST00000696315.1:ENST00000696454.1:ENST00000696508.1:ENST00000696548.1:ENST00000696542.1:ENST00000696432.1:ENST00000696319.1:ENST00000403676.6:ENST00000696433.1:ENST00000696434.1:ENST00000696499.1:ENST00000696564.1:ENST00000402135.8:ENST00000696546.1:ENST00000233741.9:ENST00000696316.1:ENST00000696378.1:ENST00000696435.1:ENST00000696493.1:ENST00000696543.1:ENST00000696544.1:ENST00000696545.1:ENST00000696565.1:ENST00000696620.1:ENST00000696621.1:ENST00000696635.1:ENST00000696364.1:ENST00000696634.1:ENST00000696317.1:ENST00000696622.1:ENST00000696467.1:ENST00000696547.1:ENST00000449070.6:ENST00000696305.1:ENST00000417361.2:ENST00000696338.1:ENST00000696361.1:ENST00000696318.1:ENST00000696371.1:ENST00000696409.1:ENST00000696410.1:ENST00000696455.1:ENST00000696468.1:ENST00000696527.1:ENST00000696567.1:ENST00000696324.1:ENST00000696566.1:ENST00000696623.1:ENST00000446381.6:ENST00000696469.1:ENST00000696624.1:ENST00000696411.1:ENST00000696475.1:ENST00000470506.2:ENST00000696358.1:ENST00000696373.1:ENST00000696394.1:ENST00000696320.1:ENST00000696395.1:ENST00000696341.1:ENST00000696340.1:ENST00000696374.1:ENST00000696396.1:ENST00000696342.1:ENST00000696325.1:ENST00000696399.1:ENST00000696398.1:ENST00000696306.1:ENST00000696397.1:ENST00000696360.1:ENST00000696344.1:ENST00000696343.1:ENST00000696637.1:ENST00000696362.1:ENST00000696528.1:ENST00000696497.1:ENST00000696326.1:ENST00000696625.1:ENST00000696510.1:ENST00000696438.1:ENST00000696496.1:ENST00000696509.1:ENST00000696569.1:ENST00000696457.1:ENST00000696458.1:ENST00000696473.1:ENST00000696495.1:ENST00000696415.1:ENST00000696472.1:ENST00000696494.1:ENST00000696363.1:ENST00000696459.1:ENST00000696498.1:ENST00000696416.1:ENST00000696530.1:ENST00000696460.1:ENST00000696570.1:ENST00000696531.1:ENST00000696307.1:ENST00000696345.1:ENST00000696377.1:ENST00000696417.1:ENST00000696594.1:ENST00000696595.1:ENST00000696379.1:ENST00000696346.1:ENST00000696380.1:ENST00000696347.1:ENST00000696461.1:ENST00000696596.1:ENST00000696549.1:ENST00000696597.1:ENST00000696550.1:ENST00000696598.1:ENST00000696321.1:ENST00000696476.1:ENST00000696477.1:ENST00000696511.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	21	2	3.97679	3.9903199999999996	4.00385	0.0454568	0.0299485	0.149888	0.142135
chr2	187062555	187062655	944606	0	+	0.41	(0.408,0.44]	chr2	103476	588	INTRON	INTRON	CALCRL-AS1	ENSG00000224063.6	ENST00000453517.5:ENST00000412276.6	lncRNA	lncRNA	lncRNA	lncRNA	0	21	2	3.97679	3.9903199999999996	4.00385	0.0454568	0.0299485	0.149888	0.142135
chr22	28572257	28572357	7571858	0	-	0.44	(0.408,0.44]	chr22	774287	1293	INTRON	INTRON	TTC28	ENSG00000100154.15	ENST00000397906.7	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	3.97679	3.9903199999999996	4.00385	0.0454568	0.0299485	0.149888	0.142135
chr3	128758935	128759034	1497538	0	+	0.424242	(0.408,0.44]	chr3	156330	322	INTRON	INTRON	RAB7A	ENSG00000075785.14	ENST00000676214.1:ENST00000675864.1:ENST00000675712.1:ENST00000676425.1:ENST00000490093.6:ENST00000675342.1:ENST00000265062.8:ENST00000674748.1:ENST00000493186.6:ENST00000482525.5:ENST00000491681.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	21	2	3.97679	3.9903199999999996	4.00385	0.0454568	0.0299485	0.149888	0.142135
chr3	179407768	179407866	1878451	0	-	0.428571	(0.408,0.44]	chr3	187641	20	INTRON	INTRON	GNB4	ENSG00000114450.11	ENST00000232564.8:ENST00000676128.1:ENST00000466899.6:ENST00000674862.1:ENST00000674713.1:ENST00000468623.6:ENST00000675901.1:ENST00000674927.1	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	3.97679	3.9903199999999996	4.00385	0.0454568	0.0299485	0.149888	0.142135
chr5	10292774	10292874	2567338	0	-	0.41	(0.408,0.44]	chr5	246101	16	INTRON	INTRON	CMBL	ENSG00000164237.9	ENST00000296658.4:ENST00000510532.5:ENST00000511963.5:ENST00000506821.1:ENST00000514202.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	21	2	3.97679	3.9903199999999996	4.00385	0.0454568	0.0299485	0.149888	0.142135
chr5	60630582	60630682	2626810	0	-	0.41	(0.408,0.44]	chr5	249561	20	INTRON	INTRON	DEPDC1B	ENSG00000035499.13	ENST00000265036.10:ENST00000453022.6:ENST00000512078.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	21	2	3.97679	3.9903199999999996	4.00385	0.0454568	0.0299485	0.149888	0.142135
chr5	134355012	134355111	2727402	0	-	0.424242	(0.408,0.44]	chr5	256649	42	INTRON	INTRON	CDKL3	ENSG00000006837.12	ENST00000520693.5:ENST00000519312.5:ENST00000265334.9:ENST00000523054.5:ENST00000521118.5:ENST00000521755.1:ENST00000523832.1:ENST00000522501.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	21	2	3.97679	3.9903199999999996	4.00385	0.0454568	0.0299485	0.149888	0.142135
chr7	102065738	102065838	3368852	0	+	0.41	(0.408,0.44]	chr7	315239	372	INTRON	INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000497815.5:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000558469.5:ENST00000560541.5:ENST00000558836.5:ENST00000606749.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	21	2	3.97679	3.9903199999999996	4.00385	0.0454568	0.0299485	0.149888	0.142135
chr7	140344086	140344175	3660722	0	-	0.438202	(0.408,0.44]	chr7	339790	1	INTRON	INTRON	SLC37A3	ENSG00000157800.18	ENST00000477571.5:ENST00000326232.14:ENST00000447932.6:ENST00000340308.7:ENST00000498469.5:ENST00000491357.5:ENST00000492027.5:ENST00000477006.1:ENST00000460560.5:ENST00000485734.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	21	2	3.97679	3.9903199999999996	4.00385	0.0454568	0.0299485	0.149888	0.142135
chr9	109002643	109002743	4311424	0	-	0.41	(0.408,0.44]	chr9	396286	30	INTRON	INTRON	CTNNAL1	ENSG00000119326.15	ENST00000374595.8:ENST00000325551.9:ENST00000374593.4	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	3.97679	3.9903199999999996	4.00385	0.0454568	0.0299485	0.149888	0.142135
chrX	18336094	18336194	7770873	0	-	0.41	(0.408,0.44]	chrX	794213	16	INTRON	INTRON	SCML2	ENSG00000102098.19	ENST00000251900.9	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	3.97679	3.9903199999999996	4.00385	0.0454568	0.0299485	0.149888	0.142135
chr1	16316733	16316832	382262	0	-	0.222222	[0,0.28]	chr1	44888	9	INTRON	INTRON	FBXO42	ENSG00000037637.11	ENST00000375592.8	protein_coding	protein_coding	protein_coding	protein_coding	2	76	2	2.8193	3.9903	5.1613	0.00866441	0.00285248	0.0787025	0.0494641
chr1	246427797	246427896	679927	0	-	0.393939	(0.378,0.408]	chr1	79777	105	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000490107.6:ENST00000462422.5:ENST00000403792.7:ENST00000470863.1:ENST00000455277.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	45	2	3.17089	3.990285	4.80968	0.00679828	0.00357279	0.0711802	0.0548435
chr3	185921435	185921510	1886429	0	-	0.386667	(0.378,0.408]	chr3	188616	3	SS3_PROX	SS3_PROX:INTRON	TRA2B	ENSG00000136527.19	ENST00000453386.7:ENST00000492417.5:ENST00000463328.5:ENST00000259043.11:ENST00000414862.5:ENST00000487615.5:ENST00000466832.5:ENST00000456380.5:ENST00000382191.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	45	2	3.17089	3.990285	4.80968	0.00679828	0.00357279	0.0711802	0.0548435
chrX	154042396	154042496	7912538	0	-	0.4	(0.378,0.408]	chrX	805608	21	INTRON	INTRON	MECP2	ENSG00000169057.24	ENST00000303391.11:ENST00000453960.7:ENST00000628176.2:ENST00000407218.5:ENST00000486506.5:ENST00000369957.5:ENST00000631210.1:ENST00000496908.5:ENST00000415944.3:ENST00000460227.4:ENST00000463644.5:ENST00000488293.4:ENST00000630151.2:ENST00000676382.1:ENST00000611468.2:ENST00000637533.1:ENST00000675526.1:ENST00000637791.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	45	2	3.17089	3.990285	4.80968	0.00679828	0.00357279	0.0711802	0.0548435
chr11	3381732	3381827	4722842	0	+	0.357895	(0.35,0.378]	chr11	436970	3	INTRON	INTRON	TSSC2	ENSG00000223756.8	ENST00000685598.1:ENST00000691197.1:ENST00000533775.6:ENST00000690471.1:ENST00000529482.5:ENST00000693396.1:ENST00000685130.1:ENST00000526284.5:ENST00000530366.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	1	50	2	2.89003	3.9902749999999996	5.09052	0.0122391	0.00123501	0.0910127	0.0326215
chr12	79924202	79924302	5376426	0	-	0.31	(0.28,0.32]	chr12	512797	104	INTRON	INTRON	PPP1R12A	ENSG00000058272.19	ENST00000261207.9:ENST00000450142.7:ENST00000437004.6:ENST00000550107.5:ENST00000547330.5:ENST00000550510.5	protein_coding	protein_coding	protein_coding	protein_coding	1	54	2	3.47062	3.990215	4.50981	0.0275554	0.00137212	0.123904	0.0340241
chr4	128079529	128079626	2042780	0	+	0.309278	(0.28,0.32]	chr4	202862	12	INTRON	INTRON	LARP1B	ENSG00000138709.19	ENST00000512292.5:ENST00000326639.11:ENST00000508819.5:ENST00000394288.7:ENST00000432347.6:ENST00000649983.1:ENST00000650359.1:ENST00000648358.1:ENST00000507377.1	protein_coding	protein_coding	protein_coding	protein_coding	1	54	2	3.47062	3.990215	4.50981	0.0275554	0.00137212	0.123904	0.0340241
chr20	41596523	41596623	7344326	0	-	0.44	(0.408,0.44]	chr20	748566	320	INTRON	INTRON	CHD6	ENSG00000124177.16	ENST00000373233.8:ENST00000373222.3:ENST00000482596.1:ENST00000440647.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	44	2	2.96007	3.990175	5.02028	0.00753901	0.00303216	0.0773151	0.0493883
chr8	90527471	90527571	3795380	0	+	0.44	(0.408,0.44]	chr8	351834	74	INTRON	INTRON	LINC00534	ENSG00000253394.7	ENST00000655523.1:ENST00000658299.1:ENST00000662692.1:ENST00000667296.1:ENST00000653734.1:ENST00000654785.1:ENST00000524361.5:ENST00000668745.1:ENST00000671657.1	lncRNA	lncRNA	lncRNA	lncRNA	1	44	2	2.96007	3.990175	5.02028	0.00753901	0.00303216	0.0773151	0.0493883
chr1	28766931	28767031	58648	0	+	0.45	(0.44,0.476]	chr1	7605	226	INTRON	INTRON	YTHDF2	ENSG00000198492.16	ENST00000542507.5:ENST00000373812.8:ENST00000541996.5:ENST00000478283.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	59	2	2.78129	3.9900450000000003	5.1988	0.00229634	0.00151532	0.0439319	0.0352794
chr13	98012742	98012842	5521113	0	+	0.38	(0.378,0.408]	chr13	527937	4	SS5_PROX	SS5_PROX:INTRON	IPO5	ENSG00000065150.21	ENST00000651721.2:ENST00000261574.10:ENST00000357602.7:ENST00000490680.5:ENST00000469360.5:ENST00000491555.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	45	2	2.85854	3.98991	5.12128	0.0107837	0.00251746	0.0920575	0.0446195
chr19	4431451	4431532	7002064	0	+	0.493827	(0.476,0.515]	chr19	694568	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CHAF1A	ENSG00000167670.16	ENST00000301280.10:ENST00000587368.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	48	2	3.19975	3.989155	4.77856	0.00383299	0.00305743	0.0542786	0.0509893
chr1	244656920	244657020	347749	0	+	0.48	(0.476,0.515]	chr1	40357	5	INTRON	INTRON	DESI2	ENSG00000121644.19	ENST00000263831.11:ENST00000302550.16:ENST00000418162.1	protein_coding	protein_coding	protein_coding	protein_coding	2	96	2	3.83511	3.9891499999999995	4.14319	2.63754e-4	3.39012e-5	0.0149561	0.0046443
chr20	57517007	57517103	7359196	0	-	0.395833	(0.378,0.408]	chr20	750466	8	INTRON	INTRON	CTCFL	ENSG00000124092.13	ENST00000423479.7:ENST00000429804.7:ENST00000609232.5:ENST00000608263.5:ENST00000243914.8:ENST00000371196.6:ENST00000433949.7:ENST00000502686.6:ENST00000422109.6:ENST00000426658.6:ENST00000608440.5:ENST00000422869.6:ENST00000608425.5:ENST00000539382.5:ENST00000608903.5:ENST00000432255.6:ENST00000608108.1:ENST00000608858.5:ENST00000607923.5:ENST00000608720.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	70	2	1.8252	3.98894	6.15268	0.0619563	5.3788e-6	0.174514	0.00160484
chr11	46844221	46844321	4948746	0	-	0.28	[0,0.28]	chr11	463857	175	INTRON	INTRON	CKAP5	ENSG00000175216.15	ENST00000529230.6:ENST00000312055.9:ENST00000525248.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	60	2	2.77716	3.9889349999999997	5.20071	0.022039	0.00261806	0.115395	0.0470772
chr10	70227655	70227755	4641160	0	-	0.33	(0.32,0.35]	chr10	426969	85	INTRON	INTRON	PPA1	ENSG00000180817.12	ENST00000373232.8:ENST00000373230.7:ENST00000625364.1:ENST00000460755.1:ENST00000495346.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	22	2	3.91486	3.988925	4.06299	0.0559439	0.0450361	0.165463	0.163255
chr11	66062198	66062298	4807786	0	+	0.33	(0.32,0.35]	chr11	447302	2	SS5_PROX	SS5_PROX:INTRON	SF3B2	ENSG00000087365.16	ENST00000528302.5:ENST00000322535.11:ENST00000530981.1	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.91486	3.988925	4.06299	0.0559439	0.0450361	0.165463	0.163255
chr12	65175707	65175807	5157174	0	+	0.34	(0.32,0.35]	chr12	488236	39	INTRON	INTRON	LEMD3	ENSG00000174106.3	ENST00000308330.3:ENST00000541171.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	22	2	3.91486	3.988925	4.06299	0.0559439	0.0450361	0.165463	0.163255
chr12	104633982	104634082	5212458	0	+	0.33	(0.32,0.35]	chr12	493329	316	INTRON	INTRON	CHST11	ENSG00000171310.11	ENST00000303694.6:ENST00000549260.5:ENST00000549016.1	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.91486	3.988925	4.06299	0.0559439	0.0450361	0.165463	0.163255
chr14	36317410	36317508	5873015	0	-	0.326531	(0.32,0.35]	chr14	557935	2	INTRON	INTRON	MBIP	ENSG00000151332.20	ENST00000416007.9:ENST00000318473.11:ENST00000359527.11:ENST00000605579.5:ENST00000604336.5:ENST00000603139.1:ENST00000604160.1	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.91486	3.988925	4.06299	0.0559439	0.0450361	0.165463	0.163255
chr14	37161280	37161380	5877900	0	-	0.34	(0.32,0.35]	chr14	558013	2859	INTRON	INTRON	SLC25A21	ENSG00000183032.12	ENST00000331299.6:ENST00000555449.5:ENST00000557611.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	22	2	3.91486	3.988925	4.06299	0.0559439	0.0450361	0.165463	0.163255
chr14	60884234	60884334	5738225	0	+	0.33	(0.32,0.35]	chr14	544921	40	INTRON	INTRON	MNAT1	ENSG00000020426.11	ENST00000261245.9:ENST00000539616.6:ENST00000554002.5:ENST00000557134.1	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.91486	3.988925	4.06299	0.0559439	0.0450361	0.165463	0.163255
chr15	57212183	57212283	6035059	0	+	0.33	(0.32,0.35]	chr15	574725	140	INTRON	INTRON	TCF12	ENSG00000140262.18	ENST00000438423.6:ENST00000267811.9:ENST00000333725.10:ENST00000560190.5:ENST00000559609.5:ENST00000557843.5:ENST00000561346.5:ENST00000560887.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	22	2	3.91486	3.988925	4.06299	0.0559439	0.0450361	0.165463	0.163255
chr16	16643856	16643956	6312303	0	+	0.34	(0.32,0.35]	chr16	604106	100	INTRON	INTRON	ENSG00000260126	ENSG00000260126.2	ENST00000567465.2	lncRNA	lncRNA	lncRNA	lncRNA	0	22	2	3.91486	3.988925	4.06299	0.0559439	0.0450361	0.165463	0.163255
chr17	66400614	66400714	6663278	0	+	0.34	(0.32,0.35]	chr17	650326	364	INTRON	INTRON	PRKCA	ENSG00000154229.12	ENST00000413366.8:ENST00000578063.5:ENST00000284384.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	22	2	3.91486	3.988925	4.06299	0.0559439	0.0450361	0.165463	0.163255
chr18	26061336	26061436	6959430	0	-	0.34	(0.32,0.35]	chr18	688450	32	INTRON	INTRON	SS18	ENSG00000141380.14	ENST00000415083.7:ENST00000542420.6:ENST00000579640.5:ENST00000269138.9:ENST00000269137.11:ENST00000585121.5:ENST00000539244.6:ENST00000585241.5:ENST00000578954.5:ENST00000579061.5:ENST00000577636.5:ENST00000584083.5:ENST00000578700.5:ENST00000582792.5:ENST00000581021.5:ENST00000577572.5:ENST00000582448.5:ENST00000581570.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	22	2	3.91486	3.988925	4.06299	0.0559439	0.0450361	0.165463	0.163255
chr19	2119706	2119799	7115212	0	-	0.344086	(0.32,0.35]	chr19	715193	5	INTRON	INTRON	AP3D1	ENSG00000065000.19	ENST00000643116.3:ENST00000345016.9:ENST00000644728.1:ENST00000591631.2:ENST00000643010.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	22	2	3.91486	3.988925	4.06299	0.0559439	0.0450361	0.165463	0.163255
chr2	121589581	121589681	1221790	0	-	0.35	(0.32,0.35]	chr2	130051	589	INTRON	INTRON	CLASP1	ENSG00000074054.20	ENST00000263710.8:ENST00000397587.7:ENST00000541377.5:ENST00000409078.8:ENST00000455322.6	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.91486	3.988925	4.06299	0.0559439	0.0450361	0.165463	0.163255
chr20	29097032	29097132	7252670	0	+	0.35	(0.32,0.35]	chr20	736536	2	SS5_PROX	SS5_PROX:INTRON	FRG1DP	ENSG00000282870.1	ENST00000635586.1	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	0	22	2	3.91486	3.988925	4.06299	0.0559439	0.0450361	0.165463	0.163255
chr21	10526070	10526168	7369278	0	+	0.336735	(0.32,0.35]	chr21	752070	10	INTRON	INTRON	ENSG00000273840	ENSG00000273840.1	ENST00000612267.1	lncRNA	lncRNA	lncRNA	lncRNA	0	22	2	3.91486	3.988925	4.06299	0.0559439	0.0450361	0.165463	0.163255
chr21	46309957	46310057	7471542	0	-	0.34	(0.32,0.35]	chr21	761728	70	INTRON	INTRON	C21orf58	ENSG00000160298.18	ENST00000491666.5:ENST00000397683.5:ENST00000417060.5:ENST00000397682.7:ENST00000291691.12:ENST00000397680.5:ENST00000397679.5:ENST00000472607.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	22	2	3.91486	3.988925	4.06299	0.0559439	0.0450361	0.165463	0.163255
chr3	60032428	60032528	1709936	0	-	0.34	(0.32,0.35]	chr3	176128	179	INTRON	INTRON	FHIT	ENSG00000189283.10	ENST00000492590.6:ENST00000476844.5:ENST00000466788.1:ENST00000468189.5:ENST00000488467.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	22	2	3.91486	3.988925	4.06299	0.0559439	0.0450361	0.165463	0.163255
chr4	48379948	48380048	1957411	0	+	0.33	(0.32,0.35]	chr4	196136	1	SS5_PROX	SS5_PROX:INTRON	SLAIN2	ENSG00000109171.15	ENST00000264313.11:ENST00000512093.5:ENST00000505131.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	22	2	3.91486	3.988925	4.06299	0.0559439	0.0450361	0.165463	0.163255
chr4	165305307	165305407	2079438	0	+	0.34	(0.32,0.35]	chr4	205510	3	SS3_PROX	SS3_PROX:INTRON	KLHL2	ENSG00000109466.14	ENST00000226725.11:ENST00000514860.5:ENST00000538127.5:ENST00000506824.5:ENST00000421009.6:ENST00000506541.5:ENST00000506761.1:ENST00000509028.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	22	2	3.91486	3.988925	4.06299	0.0559439	0.0450361	0.165463	0.163255
chr5	126783648	126783747	2479240	0	+	0.333333	(0.32,0.35]	chr5	236699	54	INTRON	INTRON	LMNB1	ENSG00000113368.12	ENST00000460265.5:ENST00000261366.10:ENST00000504788.5:ENST00000472034.5:ENST00000492190.5:ENST00000395354.1:ENST00000463908.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	22	2	3.91486	3.988925	4.06299	0.0559439	0.0450361	0.165463	0.163255
chr5	131313778	131313877	2485134	0	+	0.323232	(0.32,0.35]	chr5	237114	493	INTRON	INTRON	CDC42SE2	ENSG00000158985.14	ENST00000502840.5:ENST00000511432.5:ENST00000506419.5:ENST00000395246.5:ENST00000505065.2:ENST00000504701.5:ENST00000503291.5:ENST00000360515.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	22	2	3.91486	3.988925	4.06299	0.0559439	0.0450361	0.165463	0.163255
chr6	37944497	37944597	2858281	0	+	0.33	(0.32,0.35]	chr6	270231	141	INTRON	INTRON	ZFAND3	ENSG00000156639.12	ENST00000287218.9:ENST00000373391.6:ENST00000474522.5:ENST00000373389.5	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.91486	3.988925	4.06299	0.0559439	0.0450361	0.165463	0.163255
chr6	104970370	104970470	2929984	0	+	0.34	(0.32,0.35]	chr6	276110	117	INTRON	INTRON	LIN28B	ENSG00000187772.8	ENST00000635857.1:ENST00000637759.1:ENST00000345080.5	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.91486	3.988925	4.06299	0.0559439	0.0450361	0.165463	0.163255
chr6	107397910	107398010	3181297	0	-	0.34	(0.32,0.35]	chr6	296346	632	INTRON	INTRON	PDSS2	ENSG00000164494.12	ENST00000369037.9:ENST00000369031.4	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.91486	3.988925	4.06299	0.0559439	0.0450361	0.165463	0.163255
chr6	126001497	126001595	2956212	0	+	0.346939	(0.32,0.35]	chr6	278005	15	INTRON	INTRON	TRMT11	ENSG00000066651.20	ENST00000479748.5:ENST00000368332.7:ENST00000461129.5:ENST00000648977.1:ENST00000468097.5:ENST00000334379.11	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	22	2	3.91486	3.988925	4.06299	0.0559439	0.0450361	0.165463	0.163255
chr6	150898964	150899021	2998197	0	+	0.333333	(0.32,0.35]	chr6	280509	2	UTR3	UTR3:EXON_MRNA:INTRON	MTHFD1L	ENSG00000120254.16	ENST00000611279.4:ENST00000367321.8:ENST00000367307.8:ENST00000367308.8:ENST00000618312.4:ENST00000441122.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	22	2	3.91486	3.988925	4.06299	0.0559439	0.0450361	0.165463	0.163255
chr8	96648897	96648997	3804029	0	+	0.33	(0.32,0.35]	chr8	352745	31	INTRON	INTRON	CPQ	ENSG00000104324.16	ENST00000220763.10:ENST00000519900.1:ENST00000517742.1	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.91486	3.988925	4.06299	0.0559439	0.0450361	0.165463	0.163255
chr8	104561139	104561239	4014443	0	-	0.35	(0.32,0.35]	chr8	367439	288	INTRON	INTRON	LRP12	ENSG00000147650.12	ENST00000424843.6:ENST00000276654.10:ENST00000520770.1:ENST00000519675.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	22	2	3.91486	3.988925	4.06299	0.0559439	0.0450361	0.165463	0.163255
chr8	127837362	127837462	3860475	0	+	0.35	(0.32,0.35]	chr8	355402	171	INTRON	INTRON	PVT1	ENSG00000249859.13	ENST00000667305.1:ENST00000690350.1:ENST00000653522.1:ENST00000664214.1:ENST00000664139.1:ENST00000661830.1:ENST00000657289.1:ENST00000504719.7:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000656880.1:ENST00000660200.1:ENST00000669132.1:ENST00000657211.1:ENST00000653845.1:ENST00000517525.2:ENST00000665856.1:ENST00000651587.1:ENST00000692980.1:ENST00000666353.1:ENST00000657183.1:ENST00000654324.1:ENST00000658556.1:ENST00000657693.1:ENST00000666080.1:ENST00000667539.1:ENST00000521951.1:ENST00000524165.6:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000664293.1:ENST00000657297.1:ENST00000662410.1:ENST00000670795.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000654091.1:ENST00000523328.6:ENST00000657356.1:ENST00000523427.2:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000662061.1:ENST00000667204.1:ENST00000656491.1:ENST00000667714.1:ENST00000654105.1:ENST00000665721.1:ENST00000518528.2:ENST00000669416.1:ENST00000660438.1:ENST00000661160.1:ENST00000659326.1:ENST00000665246.1:ENST00000657384.1:ENST00000666842.1:ENST00000517790.2:ENST00000522963.6:ENST00000654369.1:ENST00000661625.1:ENST00000657596.1:ENST00000664995.1:ENST00000656532.1:ENST00000661988.1:ENST00000657517.1:ENST00000670714.1:ENST00000669951.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000656693.1:ENST00000668123.1:ENST00000666776.1:ENST00000664299.1:ENST00000669272.1:ENST00000659912.1:ENST00000670532.1:ENST00000660896.1:ENST00000667149.1:ENST00000656396.1:ENST00000523068.2	lncRNA	lncRNA	lncRNA	lncRNA	0	22	2	3.91486	3.988925	4.06299	0.0559439	0.0450361	0.165463	0.163255
chr9	33866840	33866940	4110722	0	+	0.35	(0.32,0.35]	chr9	374686	359	INTRON	INTRON	UBE2R2	ENSG00000107341.5	ENST00000263228.4	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.91486	3.988925	4.06299	0.0559439	0.0450361	0.165463	0.163255
chrX	138993016	138993116	7901496	0	-	0.33	(0.32,0.35]	chrX	804252	20	INTRON	INTRON	FGF13	ENSG00000129682.16	ENST00000441825.8:ENST00000626909.2:ENST00000436198.5:ENST00000448673.1:ENST00000421460.1	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.91486	3.988925	4.06299	0.0559439	0.0450361	0.165463	0.163255
chrX	139050416	139050516	7902070	0	-	0.35	(0.32,0.35]	chrX	804252	594	INTRON	INTRON	FGF13	ENSG00000129682.16	ENST00000441825.8:ENST00000626909.2:ENST00000436198.5:ENST00000448673.1:ENST00000421460.1	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.91486	3.988925	4.06299	0.0559439	0.0450361	0.165463	0.163255
chr1	150554734	150554831	223204	0	+	0.628866	(0.57,1]	chr1	25279	1	SS5_PROX	SS5_PROX:INTRON	ADAMTSL4	ENSG00000143382.16	ENST00000369039.9:ENST00000271643.9:ENST00000369041.9:ENST00000674043.1:ENST00000674058.1:ENST00000369038.6	protein_coding	protein_coding	protein_coding	protein_coding	2	41	2	3.10443	3.98888	4.87333	3.67483e-4	3.21412e-4	0.017788000000000002	0.0159645
chr18	13008931	13009031	6876748	0	+	0.46	(0.44,0.476]	chr18	681362	3	SS5_PROX	SS5_PROX:INTRON	CEP192	ENSG00000101639.19	ENST00000325971.12:ENST00000506447.5:ENST00000589596.5:ENST00000513432.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	44	2	3.14559	3.988805	4.83202	0.00525002	0.00384923	0.0633615	0.0562562
chr5	180509382	180509482	2562013	0	+	0.42	(0.408,0.44]	chr5	245082	134	INTRON	INTRON	CNOT6	ENSG00000113300.13	ENST00000261951.9:ENST00000393356.7:ENST00000507016.1:ENST00000618123.4:ENST00000502447.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	61	2	3.01942	3.988795	4.95817	0.00372419	7.74413e-4	0.0535094	0.0256083
chr5	115840096	115840196	2707918	0	-	0.37	(0.35,0.378]	chr5	254823	2	SS5_PROX	SS5_PROX:INTRON	ATG12	ENSG00000145782.13	ENST00000509910.2:ENST00000500945.2:ENST00000513322.5:ENST00000379594.7:ENST00000505993.5:ENST00000513167.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	46	2	2.99173	3.98867	4.98561	0.00713365	0.00474226	0.0756118	0.0600445
chr1	186401820	186401919	277815	0	+	0.292929	(0.28,0.32]	chr1	32482	24	INTRON	INTRON	ODR4	ENSG00000157181.16	ENST00000367470.8:ENST00000287859.11:ENST00000419367.8:ENST00000478571.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	51	2	3.17453	3.98854	4.80255	0.0137406	0.00429297	0.0949306	0.0599065
chr7	106283847	106283947	3608600	0	-	0.31	(0.28,0.32]	chr7	336543	1	SS5_PROX	SS5_PROX:INTRON	NAMPT	ENSG00000105835.13	ENST00000681491.1:ENST00000222553.8:ENST00000681494.1:ENST00000680708.1:ENST00000681653.1:ENST00000681391.1:ENST00000680991.1:ENST00000680077.1:ENST00000681456.1:ENST00000680675.1:ENST00000681550.1:ENST00000680864.1:ENST00000680584.1:ENST00000680669.1:ENST00000424768.2:ENST00000681255.1:ENST00000679873.1:ENST00000679643.1:ENST00000681878.1:ENST00000489732.2:ENST00000679951.1:ENST00000680823.1:ENST00000680468.1:ENST00000681936.1:ENST00000680152.1:ENST00000681887.1:ENST00000680129.1:ENST00000680786.1:ENST00000681223.1:ENST00000679717.1:ENST00000354289.9:ENST00000491027.6:ENST00000393618.6:ENST00000489358.5:ENST00000441045.6:ENST00000417537.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	51	2	3.17453	3.98854	4.80255	0.0137406	0.00429297	0.0949306	0.0599065
chr6	4780406	4780506	2790902	0	+	0.58	(0.57,1]	chr6	263598	32	INTRON	INTRON	CDYL	ENSG00000153046.18	ENST00000328908.9:ENST00000491864.1:ENST00000440139.5:ENST00000483019.1:ENST00000397588.8:ENST00000472453.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	46	2	2.46083	3.988525	5.51622	0.00255312	1.33983e-5	0.0466386	0.00288846
chr7	65975851	65975932	3538160	0	-	0.444444	(0.44,0.476]	chr7	330016	1	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	GUSB	ENSG00000169919.17	ENST00000304895.9:ENST00000466883.5:ENST00000430730.5:ENST00000447929.5:ENST00000421103.5:ENST00000465785.5:ENST00000479038.1:ENST00000475316.5:ENST00000476486.5:ENST00000446111.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	98	2	3.8666	3.98841	4.11022	1.50865e-4	7.0223e-5	0.0106137	0.00749221
chr6	147240069	147240168	2989066	0	+	0.484848	(0.476,0.515]	chr6	280013	4	INTRON	INTRON	STXBP5	ENSG00000164506.15	ENST00000321680.11:ENST00000367481.7:ENST00000546097.5:ENST00000367480.7	protein_coding	protein_coding	protein_coding	protein_coding	1	47	2	3.05152	3.988405	4.92529	0.0064848	0.00180221	0.0699952	0.0392772
chr17	62008783	62008880	6810305	0	-	0.298969	(0.28,0.32]	chr17	672913	14	INTRON	INTRON	MED13	ENSG00000108510.10	ENST00000397786.7	protein_coding	protein_coding	protein_coding	protein_coding	1	51	2	2.67453	3.9880299999999997	5.30153	0.021289	0.00332518	0.123318	0.0512081
chr7	10637243	10637343	3483152	0	-	0.45	(0.44,0.476]	chr7	325772	753	INTRON	INTRON	MGC4859	ENSG00000283117.1	ENST00000634803.1	lncRNA	lncRNA	lncRNA	lncRNA	3	76	2	2.2193	3.987895	5.75649	0.00896114	4.17314e-5	0.0800073	0.00523306
chr15	80064915	80065014	6071085	0	+	0.424242	(0.408,0.44]	chr15	578304	38	INTRON	INTRON	ZFAND6	ENSG00000086666.19	ENST00000613266.4:ENST00000561060.5:ENST00000559157.5:ENST00000261749.11:ENST00000561012.5:ENST00000564367.5:ENST00000558494.5:ENST00000618205.4:ENST00000560470.5	protein_coding	protein_coding	protein_coding	protein_coding	1	46	2	2.58179	3.987495	5.3932	0.024638	7.81492e-4	0.131869	0.0257168
chr16	84975159	84975258	6533797	0	-	0.575758	(0.57,1]	chr16	633102	11	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ZDHHC7	ENSG00000153786.13	ENST00000313732.9:ENST00000344861.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	84	2	3.30047	3.987475	4.67448	1.64629e-5	2.78232e-7	0.00306044	2.87652e-4
chr2	32521757	32521857	732498	0	+	0.37	(0.35,0.378]	chr2	84594	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	BIRC6	ENSG00000115760.15	ENST00000421745.7:ENST00000648282.1	protein_coding	protein_coding	protein_coding	protein_coding	1	46	2	3.05136	3.9874549999999997	4.92355	0.00578894	0.00573514	0.0684334	0.0657377
chr1	100040397	100040496	171626	0	+	0.323232	(0.32,0.35]	chr1	18589	17	INTRON	INTRON	ENSG00000283761:MFSD14A	ENSG00000283761.1:ENSG00000156875.14	ENST00000638792.1:ENST00000638968.1:ENST00000639040.1:ENST00000639037.1:ENST00000638779.1:ENST00000639171.1:ENST00000640238.1:ENST00000640357.1:ENST00000370152.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	85	2	1.99785	3.98717	5.97649	0.0215554	3.1737e-5	0.114686	0.00449886
chr4	126706394	126706494	2237774	0	-	0.39	(0.378,0.408]	chr4	219029	77	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	1	47	2	3.47377	3.987165	4.50056	0.015974	0.00103087	0.101453	0.0294094
chr3	183030273	183030371	1880151	0	-	0.428571	(0.408,0.44]	chr3	187877	7	INTRON	INTRON	MCCC1	ENSG00000078070.14	ENST00000492597.5:ENST00000265594.9:ENST00000629669.2:ENST00000497830.5:ENST00000497959.5:ENST00000495767.5:ENST00000476176.5:ENST00000489909.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	59	2	2.44674	3.9871600000000003	5.52758	0.00868283	4.54953e-4	0.0842798	0.0196892
chr13	30618256	30618356	5462634	0	+	0.52	(0.515,0.57]	chr13	523386	2	SS5_PROX	SS5_PROX:INTRON	USPL1	ENSG00000132952.12	ENST00000465952.5:ENST00000255304.9:ENST00000614860.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	64	2	2.496	3.9869950000000003	5.47799	0.00225531	2.09356e-4	0.0436331	0.0131276
chr16	85518881	85518981	6415019	0	+	0.59	(0.57,1]	chr16	615465	1596	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	3	72	2	3.81821	3.98695	4.15569	1.16266e-5	3.51877e-6	0.00251847	0.0013382
chr19	12541324	12541424	7139855	0	-	0.49	(0.476,0.515]	chr19	720331	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ZNF564	ENSG00000249709.8	ENST00000339282.12:ENST00000427105.1:ENST00000596193.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	100	2	2.19541	3.98687	5.77833	0.00155426	1.24749e-4	0.0364504	0.010049
chr2	25877865	25877965	1085536	0	-	0.64	(0.57,1]	chr2	115963	3	SS5_PROX	SS5_PROX:INTRON	ASXL2	ENSG00000143970.18	ENST00000435504.9:ENST00000336112.9:ENST00000682588.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	30	2	2.91889	3.9866900000000003	5.05449	0.00719009	1.79828e-4	0.0756118	0.0121697
chr2	127526395	127526489	1224745	0	-	0.670213	(0.57,1]	chr2	130401	3	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	IWS1	ENSG00000163166.15	ENST00000295321.9:ENST00000495369.1:ENST00000409725.1:ENST00000486662.1:ENST00000479083.1:ENST00000460511.5:ENST00000483889.5:ENST00000436740.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	30	2	2.91889	3.9866900000000003	5.05449	0.00719009	1.79828e-4	0.0756118	0.0121697
chr10	73733765	73733865	4453693	0	+	0.36	(0.35,0.378]	chr10	411039	21	INTRON	INTRON	GLUD1P3	ENSG00000250959.3	ENST00000690102.1:ENST00000686626.1:ENST00000508551.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	1	50	2	2.39746	3.9865500000000003	5.57564	0.041314	5.93654e-4	0.161534	0.0225024
chr11	72072990	72073090	4976766	0	-	0.51	(0.476,0.515]	chr11	470150	27	INTRON	INTRON	NUMA1	ENSG00000137497.19	ENST00000393695.8:ENST00000358965.10:ENST00000351960.10:ENST00000613205.4:ENST00000537217.5:ENST00000540843.5:ENST00000543937.5:ENST00000368959.9:ENST00000541719.5:ENST00000366394.7:ENST00000541641.5:ENST00000537905.5:ENST00000535111.5:ENST00000546131.1:ENST00000543450.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	44	2	2.87879	3.98651	5.09423	0.00999149	0.00204588	0.0879541	0.04086
chr16	24440	24537	6271286	0	+	0.484536	(0.476,0.515]	chr16	598261	3	EXON_LNCRNA	EXON_LNCRNA	WASIR2	ENSG00000231439.4	ENST00000527434.1	lncRNA	lncRNA	lncRNA	lncRNA	1	44	2	2.87879	3.98651	5.09423	0.00999149	0.00204588	0.0879541	0.04086
chr7	149289091	149289191	3446099	0	+	0.5	(0.476,0.515]	chr7	321483	4	SS5_PROX	SS5_PROX:INTRON	ZNF783	ENSG00000204946.10	ENST00000378052.5:ENST00000476295.5:ENST00000481519.5:ENST00000489518.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	1	44	2	2.87879	3.98651	5.09423	0.00999149	0.00204588	0.0879541	0.04086
chr1	225412453	225412549	645595	0	-	0.541667	(0.515,0.57]	chr1	76354	1	CDS	CDS:EXON_MRNA	LBR	ENSG00000143815.15	ENST00000272163.9:ENST00000338179.6:ENST00000651341.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	15	414	2	3.44636	3.9862649999999995	4.52617	1.0344e-8	5.57776e-9	3.51053e-5	1.83234e-5
chr16	18559154	18559254	6456550	0	-	0.29	(0.28,0.32]	chr16	622499	3	SS3_PROX	SS3_PROX:INTRON	NOMO2	ENSG00000185164.15	ENST00000330537.10:ENST00000381474.7:ENST00000564991.5:ENST00000621364.4:ENST00000622306.5:ENST00000543392.5:ENST00000562312.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	52	2	3.30893	3.98626	4.66359	0.0193496	0.00260504	0.108861	0.0470772
chr3	138829603	138829702	1831449	0	-	0.575758	(0.57,1]	chr3	184062	327	INTRON	INTRON	PIK3CB	ENSG00000051382.9	ENST00000674063.1:ENST00000477593.5:ENST00000462898.5:ENST00000483968.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	54	2	3.91793	3.986225	4.05452	5.86096e-5	2.28989e-5	0.00668534	0.00373083
chr10	63440120	63440219	4635133	0	-	0.424242	(0.408,0.44]	chr10	426236	593	INTRON	INTRON	JMJD1C	ENSG00000171988.20	ENST00000399262.7:ENST00000633035.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	44	2	3.14706	3.98618	4.8253	0.0056738	0.00382411	0.0653997	0.0562562
chr7	99491745	99491844	3584029	0	-	0.474747	(0.44,0.476]	chr7	333867	44	INTRON	INTRON	ZNF394	ENSG00000160908.15	ENST00000651364.1:ENST00000462024.1	protein_coding	processed_transcript	protein_coding	processed_transcript	1	47	2	2.97451	3.9861649999999997	4.99782	0.00853825	0.0013223	0.0780043	0.0333932
chr16	88749779	88749879	6539867	0	-	0.54	(0.515,0.57]	chr16	633997	3	SS3_PROX	SS3_PROX:INTRON	PIEZO1	ENSG00000103335.22	ENST00000301015.14	protein_coding	protein_coding	protein_coding	protein_coding	1	43	2	3.2024	3.98612	4.76984	0.00322022	0.00198034	0.0507087	0.0411469
chr1	154237636	154237735	227702	0	+	0.373737	(0.35,0.378]	chr1	26269	1	INTRON	INTRON	UBAP2L	ENSG00000143569.19	ENST00000343815.10:ENST00000271877.11:ENST00000613315.4:ENST00000412596.5:ENST00000368504.5:ENST00000428931.6:ENST00000437652.5:ENST00000361546.6	protein_coding	protein_coding	protein_coding	protein_coding	2	62	2	2.76192	3.98605	5.21018	0.00265021	0.00228003	0.0474328	0.0426265
chr2	127757037	127757136	1225333	0	-	0.444444	(0.44,0.476]	chr2	130486	186	INTRON	INTRON	WDR33	ENSG00000136709.12	ENST00000322313.9:ENST00000436787.5:ENST00000393006.5	protein_coding	protein_coding	protein_coding	protein_coding	3	132	2	3.73251	3.9860300000000004	4.23955	2.74071e-5	1.88744e-5	0.00430942	0.00332085
chr7	128569720	128569820	3407741	0	+	0.31	(0.28,0.32]	chr7	318333	356	INTRON	INTRON	ENSG00000280828	ENSG00000280828.1	ENST00000479267.2	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	3	85	2	2.67037	3.98595	5.30153	0.00332518	0.00141946	0.0512081	0.034662
chr7	22857764	22857862	3288721	0	+	0.428571	(0.408,0.44]	chr7	305434	8	EXON_LNCRNA	EXON_LNCRNA:INTRON	SNHG26	ENSG00000228649.10	ENST00000415611.8:ENST00000667557.1:ENST00000422542.4:ENST00000656301.1:ENST00000661147.1:ENST00000656687.2:ENST00000662021.1:ENST00000691516.1:ENST00000685098.1:ENST00000689892.1:ENST00000663057.1:ENST00000657608.1:ENST00000688000.1:ENST00000690219.1:ENST00000658124.1:ENST00000661582.1	lncRNA	lncRNA	lncRNA	lncRNA	1	44	2	2.89193	3.98588	5.07983	0.00950364	0.00247652	0.0863579	0.0446195
chr8	27830274	27830373	3927257	0	-	0.282828	(0.28,0.32]	chr8	359605	17	INTRON	INTRON	PBK	ENSG00000168078.10	ENST00000301905.9:ENST00000522944.5:ENST00000524266.1:ENST00000521226.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	55	2	3.54514	3.98572	4.4263	0.0330296	0.00100603	0.133816	0.0292285
chr11	45939756	45939855	4943406	0	-	0.343434	(0.32,0.35]	chr11	463286	1	INTRON	INTRON	PHF21A	ENSG00000135365.17	ENST00000676320.1:ENST00000527401.5:ENST00000323180.10:ENST00000530587.6:ENST00000693049.1:ENST00000692878.1:ENST00000690620.1:ENST00000418153.6:ENST00000525676.6:ENST00000532028.1:ENST00000689695.1:ENST00000527753.5:ENST00000534766.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	53	2	2.4458	3.98571	5.52562	0.0425977	2.76065e-4	0.148082	0.0147997
chr20	49139719	49139819	7351886	0	-	0.34	(0.32,0.35]	chr20	749652	34	INTRON	INTRON	STAU1	ENSG00000124214.21	ENST00000371856.7:ENST00000371828.7:ENST00000340954.11:ENST00000347458.9:ENST00000360426.8:ENST00000371792.5:ENST00000371802.5:ENST00000437404.2	protein_coding	protein_coding	protein_coding	protein_coding	2	65	2	2.78706	3.9856049999999996	5.18415	0.00333629	0.00253645	0.0512081	0.0465056
chr2	23954010	23954110	707215	0	+	0.5	(0.476,0.515]	chr2	81932	130	INTRON	INTRON	UBXN2A	ENSG00000173960.14	ENST00000446425.2:ENST00000404924.5:ENST00000309033.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	48	2	3.62464	3.9855599999999995	4.34648	0.0193566	5.079e-4	0.108861	0.0202328
chr2	135616293	135616384	874808	0	+	0.340659	(0.32,0.35]	chr2	97916	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	R3HDM1	ENSG00000048991.17	ENST00000683871.1:ENST00000409478.5:ENST00000264160.8:ENST00000488035.5:ENST00000410054.5:ENST00000628915.2:ENST00000436436.5:ENST00000409606.5:ENST00000456040.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	53	2	3.03597	3.9851099999999997	4.93425	0.00832487	0.00281048	0.0774402	0.0488779
chr2	182948248	182948347	1285101	0	-	0.272727	[0,0.28]	chr2	135311	12	INTRON	INTRON	NCKAP1	ENSG00000061676.15	ENST00000361354.9:ENST00000360982.2	protein_coding	protein_coding	protein_coding	protein_coding	3	90	2	2.45531	3.985095	5.51488	0.00415834	0.00314116	0.0590857	0.0500389
chr18	47909006	47909106	6968501	0	-	0.37	(0.35,0.378]	chr18	689708	118	INTRON	INTRON	SMAD2	ENSG00000175387.16	ENST00000262160.11:ENST00000402690.6:ENST00000356825.8:ENST00000591214.5:ENST00000587269.5:ENST00000586514.5:ENST00000587421.5:ENST00000589877.5:ENST00000585978.1	protein_coding	protein_coding	protein_coding	protein_coding	1	50	2	2.60341	3.9850699999999994	5.3667299999999996	0.0275785	3.99274e-4	0.123904	0.0179401
chr3	187005242	187005342	1586928	0	+	0.4	(0.378,0.408]	chr3	164345	82	INTRON	INTRON	ST6GAL1	ENSG00000073849.16	ENST00000676786.1:ENST00000169298.8:ENST00000457772.6:ENST00000455441.5:ENST00000427315.5:ENST00000677292.1:ENST00000458216.5:ENST00000430309.5:ENST00000417392.5:ENST00000438590.5:ENST00000448408.5:ENST00000676633.1:ENST00000485105.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	65	2	2.30628	3.98489	5.6635	0.0163339	7.77533e-5	0.101571	0.00735438
chrX	2381761	2381861	7744421	0	-	0.4	(0.378,0.408]	chrX	792947	434	INTRON	INTRON	DHRSX	ENSG00000169084.15	ENST00000334651.11:ENST00000412516.7:ENST00000444280.6:ENST00000441131.7:ENST00000478825.7:ENST00000430536.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	65	2	2.30628	3.98489	5.6635	0.0163339	7.77533e-5	0.101571	0.00735438
chr7	152317533	152317633	3680104	0	-	0.39	(0.378,0.408]	chr7	341641	18	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000684262.1:ENST00000682301.1:ENST00000452749.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	66	2	2.11194	3.984865	5.85779	0.0292534	2.83884e-5	0.128055	0.00422437
chr5	143398856	143398956	2742483	0	-	0.32	(0.28,0.32]	chr5	258581	90	INTRON	INTRON	NR3C1	ENSG00000113580.15	ENST00000343796.6:ENST00000394464.7:ENST00000415690.6:ENST00000424646.6:ENST00000504572.5:ENST00000394466.6:ENST00000231509.7:ENST00000652686.1:ENST00000503201.1	protein_coding	protein_coding	protein_coding	protein_coding	3	83	2	1.94591	3.98485	6.02379	0.0228482	2.44054e-4	0.125519	0.0144024
chr7	119894201	119894301	3630283	0	-	0.22	[0,0.28]	chr7	337335	930	INTRON	INTRON	LINC02476	ENSG00000225546.6	ENST00000660268.1:ENST00000431071.5:ENST00000426413.2	lncRNA	lncRNA	lncRNA	lncRNA	3	185	2	3.34132	3.984845	4.62837	5.88003e-4	6.73563e-6	0.0224709	0.00183852
chr12	104293399	104293499	5210074	0	+	0.52	(0.515,0.57]	chr12	493210	19	INTRON	INTRON	TXNRD1	ENSG00000198431.17	ENST00000525566.6:ENST00000526266.5:ENST00000503506.6:ENST00000526691.5:ENST00000531691.5:ENST00000526390.5:ENST00000531689.5:ENST00000529546.5:ENST00000529751.1:ENST00000528079.6:ENST00000526580.5:ENST00000529784.5:ENST00000524698.5:ENST00000527688.5:ENST00000527335.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	60	2	1.94945	3.98482	6.02019	0.0414068	1.31473e-5	0.161557	0.00286967
chr6	4922907	4923007	2792330	0	+	0.34	(0.32,0.35]	chr6	263614	302	INTRON	INTRON	CDYL	ENSG00000153046.18	ENST00000328908.9:ENST00000440139.5:ENST00000397588.8:ENST00000472453.5:ENST00000449732.6:ENST00000343762.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	52	2	2.6321	3.984775	5.33745	0.0268	6.1485e-4	0.123349	0.0223951
chr1	163334762	163334861	239662	0	+	0.353535	(0.35,0.378]	chr1	28870	55	INTRON	INTRON	NUF2	ENSG00000143228.13	ENST00000534289.5:ENST00000450453.6:ENST00000524800.5:ENST00000367900.7:ENST00000442820.5:ENST00000271452.8:ENST00000490881.5:ENST00000497990.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	276	2	3.49547	3.98473	4.47399	2.70118e-5	1.03551e-8	0.00430583	3.51053e-5
chr5	134629376	134629476	2727967	0	-	0.55	(0.515,0.57]	chr5	256741	31	INTRON	INTRON	SAR1B	ENSG00000152700.14	ENST00000402673.7:ENST00000507419.5:ENST00000439578.5:ENST00000505758.5:ENST00000502286.1	protein_coding	protein_coding	protein_coding	protein_coding	1	41	2	2.74772	3.984565	5.22141	0.0142192	6.44141e-4	0.103638	0.0231685
chr22	20081965	20082063	7478246	0	+	0.357143	(0.35,0.378]	chr22	762700	9	INTRON	INTRON	DGCR8	ENSG00000128191.16	ENST00000383024.6:ENST00000351989.8:ENST00000457069.1	protein_coding	protein_coding	protein_coding	protein_coding	9	272	2	2.62858	3.9844999999999997	5.34042	1.39234e-4	1.40631e-8	0.0107072	4.03851e-5
chr6	167904379	167904479	3035124	0	+	0.51	(0.476,0.515]	chr6	282779	16	INTRON	INTRON	AFDN	ENSG00000130396.21	ENST00000683244.1:ENST00000351017.9:ENST00000344191.8:ENST00000392112.5:ENST00000392108.7:ENST00000400822.7:ENST00000447894.6:ENST00000366809.6:ENST00000366806.6:ENST00000423229.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	72	2	2.01953	3.98445	5.94937	0.0163662	5.50774e-5	0.109586	0.0065165
chr13	98000922	98000996	5520986	0	+	0.243243	[0,0.28]	chr13	527899	1	SS5_PROX	SS5_PROX:INTRON	IPO5	ENSG00000065150.21	ENST00000651721.2:ENST00000261574.10:ENST00000357602.7:ENST00000490680.5:ENST00000469360.5	protein_coding	protein_coding	protein_coding	protein_coding	2	75	2	2.10688	3.9842649999999997	5.86165	0.0307985	0.00101071	0.143385	0.0291154
chr3	194453131	194453205	1890853	0	-	0.472973	(0.44,0.476]	chr3	189202	2	INTRON	INTRON	ATP13A3	ENSG00000133657.17	ENST00000687055.1:ENST00000645538.1:ENST00000645319.2:ENST00000690810.1:ENST00000642744.2:ENST00000439040.6:ENST00000485194.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	326	2	3.58182	3.9839450000000003	4.38607	3.18178e-6	2.18616e-9	0.00127469	1.26299e-5
chr7	140346859	140346956	3660754	0	-	0.525773	(0.515,0.57]	chr7	339802	5	INTRON	INTRON	SLC37A3	ENSG00000157800.18	ENST00000477571.5:ENST00000326232.14:ENST00000447932.6:ENST00000340308.7:ENST00000491357.5:ENST00000492027.5:ENST00000460560.5:ENST00000485734.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	42	2	2.90311	3.98385	5.06459	0.0094233	6.03964e-4	0.0817766	0.0223465
chr17	58490401	58490498	6800352	0	-	0.257732	[0,0.28]	chr17	671555	10	UTR3	UTR3:EXON_MRNA	MTMR4	ENSG00000108389.10	ENST00000579925.5:ENST00000323456.9:ENST00000682306.1	protein_coding	protein_coding	protein_coding	protein_coding	1	60	2	2.44242	3.9838050000000003	5.52519	0.0491024	8.21427e-4	0.155269	0.0261674
chr10	79812510	79812593	4657547	0	-	0.542169	(0.515,0.57]	chr10	429035	2	SS3_PROX	SS3_PROX:INTRON	NUTM2B-AS1	ENSG00000225484.7	ENST00000601369.6:ENST00000662025.1:ENST00000670682.1:ENST00000619625.4:ENST00000658528.1:ENST00000477192.6:ENST00000665716.1:ENST00000483080.6:ENST00000661316.1:ENST00000488805.5:ENST00000659471.1:ENST00000484794.6:ENST00000495430.2:ENST00000496359.6:ENST00000669121.1:ENST00000419697.1	lncRNA	lncRNA	lncRNA	lncRNA	1	40	2	3.05839	3.983755	4.90912	0.00485936	0.0021669	0.0640618	0.0417866
chr17	45097444	45097544	6617727	0	+	0.47	(0.44,0.476]	chr17	645349	2	SS5_PROX	SS5_PROX:INTRON	NMT1	ENSG00000136448.13	ENST00000678938.1:ENST00000592782.5:ENST00000676828.1:ENST00000590310.2:ENST00000587014.2:ENST00000591931.2:ENST00000678606.1:ENST00000677949.1:ENST00000587670.2:ENST00000258960.7:ENST00000678576.1:ENST00000676753.1:ENST00000678332.1:ENST00000543908.5:ENST00000590114.6:ENST00000592654.3:ENST00000588455.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	45	2	2.66433	3.9836150000000004	5.3029	0.0194358	0.00102616	0.119831	0.029231300000000002
chr20	50524982	50525082	7286060	0	+	0.25	[0,0.28]	chr20	741241	140	INTRON	INTRON	PTPN1	ENSG00000196396.10	ENST00000541713.5:ENST00000371621.5	protein_coding	protein_coding	protein_coding	protein_coding	1	54	2	2.8569	3.9836150000000004	5.11033	0.013822	0.00991388	0.10247	0.0838372
chr1	214284522	214284622	312988	0	+	0.41	(0.408,0.44]	chr1	36004	27	INTRON	INTRON	SMYD2	ENSG00000143499.14	ENST00000491455.5:ENST00000471645.5:ENST00000366957.10:ENST00000460580.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	48	2	2.3975	3.983615	5.56973	0.040266	3.81714e-4	0.161534	0.0181283
chr10	5689145	5689245	4384384	0	+	0.33	(0.32,0.35]	chr10	404456	36	INTRON	INTRON	TASOR2	ENSG00000108021.21	ENST00000695832.1:ENST00000328090.9:ENST00000695737.1:ENST00000695833.1:ENST00000695834.1:ENST00000695835.1:ENST00000695836.1:ENST00000473789.5:ENST00000477043.5:ENST00000496681.5:ENST00000480839.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	64	2	2.54408	3.983565	5.42305	0.00659077	0.00149027	0.0737338	0.035
chr7	107114459	107114559	3377866	0	+	0.42	(0.408,0.44]	chr7	316252	222	INTRON	INTRON	PRKAR2B	ENSG00000005249.13	ENST00000265717.5:ENST00000393613.6:ENST00000488792.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	71	2	2.57365	3.9834250000000004	5.3932	0.00172241	7.81492e-4	0.0383099	0.0257168
chr7	141604553	141604652	3439566	0	+	0.353535	(0.35,0.378]	chr7	320587	29	INTRON	INTRON	AGK	ENSG00000006530.18	ENST00000629555.2:ENST00000473247.5:ENST00000649365.1:ENST00000649014.1:ENST00000650365.1:ENST00000648489.1:ENST00000649286.2:ENST00000648690.1:ENST00000649790.1:ENST00000473884.5:ENST00000649914.1:ENST00000647568.1:ENST00000648395.1:ENST00000648068.1:ENST00000650547.1:ENST00000650006.1:ENST00000649538.1:ENST00000494688.1:ENST00000465241.5:ENST00000647898.1:ENST00000496273.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	46	2	2.86451	3.983385	5.10226	0.0109111	0.00327038	0.0923273	0.0508595
chr18	749512	749612	6940072	0	-	0.41	(0.408,0.44]	chr18	686497	11	INTRON	INTRON	YES1	ENSG00000176105.14	ENST00000584307.5:ENST00000314574.5:ENST00000577961.5	protein_coding	protein_coding	protein_coding	protein_coding	1	47	2	2.78122	3.98329	5.18536	0.015812	6.17381e-4	0.101453	0.0223951
chr12	6496324	6496424	5069242	0	+	0.4	(0.378,0.408]	chr12	478656	7	INTRON	INTRON	NCAPD2	ENSG00000010292.13	ENST00000541399.1:ENST00000539714.5:ENST00000382457.8:ENST00000539084.5:ENST00000315579.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	50	2	2.38873	3.983275	5.57782	0.0458857	1.18586e-4	0.149888	0.00930884
chr12	122574780	122574880	5241084	0	+	0.39	(0.378,0.408]	chr12	497712	4	SS5_PROX	SS5_PROX:INTRON	KNTC1	ENSG00000184445.12	ENST00000450485.6:ENST00000333479.12	protein_coding	protein_coding	protein_coding	protein_coding	6	246	2	3.51151	3.98323	4.45495	2.34755e-6	4.09855e-7	9.6387e-4	3.64363e-4
chr6	15036148	15036248	3063294	0	-	0.41	(0.408,0.44]	chr6	284657	143	INTRON	INTRON	ENSG00000234261	ENSG00000234261.5	ENST00000653525.1:ENST00000656468.1:ENST00000656344.1:ENST00000437648.1	lncRNA	lncRNA	lncRNA	lncRNA	1	47	2	2.84077	3.983225	5.12568	0.0132196	7.90919e-4	0.0940535	0.0258324
chr1	1515414	1515511	1881	0	+	0.505155	(0.476,0.515]	chr1	442	24	INTRON	INTRON	ATAD3A	ENSG00000197785.14	ENST00000378756.8:ENST00000672388.1:ENST00000378755.9:ENST00000339113.9:ENST00000536055.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	21	2	3.83018	3.98302	4.13586	0.0423385	0.031846	0.161744	0.13151
chr1	11830965	11831062	25719	0	+	0.484536	(0.476,0.515]	chr1	2861	3	INTRON	INTRON	CLCN6	ENSG00000011021.23	ENST00000312413.10:ENST00000346436.11:ENST00000400892.3:ENST00000376496.4:ENST00000494028.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	21	2	3.83018	3.98302	4.13586	0.0423385	0.031846	0.161744	0.13151
chr1	197754481	197754581	616737	0	-	0.51	(0.476,0.515]	chr1	72894	183	INTRON	INTRON	DENND1B	ENSG00000213047.13	ENST00000620048.6:ENST00000294737.11:ENST00000367396.7:ENST00000235453.8:ENST00000422998.1:ENST00000468589.5:ENST00000495550.5:ENST00000477581.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	21	2	3.83018	3.98302	4.13586	0.0423385	0.031846	0.161744	0.13151
chr1	229472090	229472188	652956	0	-	0.510204	(0.476,0.515]	chr1	77333	9	INTRON	INTRON	NUP133	ENSG00000069248.12	ENST00000261396.6	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	3.83018	3.98302	4.13586	0.0423385	0.031846	0.161744	0.13151
chr10	869310	869409	4541957	0	-	0.494949	(0.476,0.515]	chr10	419274	47	INTRON	INTRON	LARP4B	ENSG00000107929.16	ENST00000316157.8:ENST00000690516.1:ENST00000689323.1:ENST00000476529.5:ENST00000406525.6:ENST00000481118.1:ENST00000412411.1:ENST00000693234.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	21	2	3.83018	3.98302	4.13586	0.0423385	0.031846	0.161744	0.13151
chr11	46795976	46796076	4948244	0	-	0.5	(0.476,0.515]	chr11	463786	2	SS3_PROX	SS3_PROX:INTRON	CKAP5	ENSG00000175216.15	ENST00000529230.6:ENST00000312055.9:ENST00000354558.7	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	3.83018	3.98302	4.13586	0.0423385	0.031846	0.161744	0.13151
chr11	62720794	62720894	4960928	0	-	0.48	(0.476,0.515]	chr11	466787	1	SS5_PROX	SS5_PROX:INTRON	HNRNPUL2-BSCL2:HNRNPUL2	ENSG00000234857.2:ENSG00000214753.4	ENST00000403734.2:ENST00000301785.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	21	2	3.83018	3.98302	4.13586	0.0423385	0.031846	0.161744	0.13151
chr11	108159710	108159805	5034538	0	-	0.505263	(0.476,0.515]	chr11	474377	3	INTRON	INTRON	NPAT	ENSG00000149308.17	ENST00000278612.9:ENST00000530926.1:ENST00000530859.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	21	2	3.83018	3.98302	4.13586	0.0423385	0.031846	0.161744	0.13151
chr12	27725967	27726067	5099146	0	+	0.5	(0.476,0.515]	chr12	481822	3	SS5_PROX	SS5_PROX:INTRON	MRPS35	ENSG00000061794.13	ENST00000536569.1:ENST00000081029.8:ENST00000538315.5:ENST00000542791.1:ENST00000542199.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	21	2	3.83018	3.98302	4.13586	0.0423385	0.031846	0.161744	0.13151
chr12	50238777	50238877	5323832	0	-	0.5	(0.476,0.515]	chr12	507614	67	INTRON	INTRON	LIMA1	ENSG00000050405.14	ENST00000341247.9:ENST00000394943.7:ENST00000552720.5:ENST00000551691.5:ENST00000550592.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	21	2	3.83018	3.98302	4.13586	0.0423385	0.031846	0.161744	0.13151
chr12	122113358	122113458	5240208	0	+	0.51	(0.476,0.515]	chr12	497496	337	INTRON	INTRON	MLXIP	ENSG00000175727.14	ENST00000319080.12	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	3.83018	3.98302	4.13586	0.0423385	0.031846	0.161744	0.13151
chr17	32814154	32814254	6756484	0	-	0.49	(0.476,0.515]	chr17	664073	195	INTRON	INTRON	MYO1D	ENSG00000176658.17	ENST00000318217.10:ENST00000394649.8:ENST00000579584.5:ENST00000583621.1	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	3.83018	3.98302	4.13586	0.0423385	0.031846	0.161744	0.13151
chr17	58733717	58733817	6637622	0	+	0.48	(0.476,0.515]	chr17	648228	2	SS3_PROX	SS3_PROX:INTRON	RAD51C	ENSG00000108384.15	ENST00000337432.9:ENST00000475762.5:ENST00000487525.5:ENST00000482007.5:ENST00000413590.5:ENST00000581221.5:ENST00000578151.1:ENST00000584804.1:ENST00000461706.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	21	2	3.83018	3.98302	4.13586	0.0423385	0.031846	0.161744	0.13151
chr17	59918972	59919071	6644030	0	+	0.484848	(0.476,0.515]	chr17	648827	39	INTRON	INTRON	RPS6KB1	ENSG00000108443.14	ENST00000393021.7:ENST00000472940.5:ENST00000225577.9:ENST00000443572.6:ENST00000489824.1:ENST00000406116.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	21	2	3.83018	3.98302	4.13586	0.0423385	0.031846	0.161744	0.13151
chr18	22987447	22987545	6883117	0	+	0.489796	(0.476,0.515]	chr18	682097	21	INTRON	INTRON	RBBP8	ENSG00000101773.19	ENST00000327155.10:ENST00000399722.6:ENST00000399725.6:ENST00000399721.6:ENST00000360790.9:ENST00000577445.1:ENST00000585177.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	21	2	3.83018	3.98302	4.13586	0.0423385	0.031846	0.161744	0.13151
chr19	3372943	3373042	6999689	0	+	0.484848	(0.476,0.515]	chr19	694167	59	INTRON	INTRON	NFIC	ENSG00000141905.19	ENST00000641145.1:ENST00000589123.5:ENST00000395111.7:ENST00000586919.5:ENST00000341919.7:ENST00000443272.3:ENST00000590282.5	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	3.83018	3.98302	4.13586	0.0423385	0.031846	0.161744	0.13151
chr19	12169791	12169891	7021435	0	+	0.49	(0.476,0.515]	chr19	698044	4	SS5_PROX	SS5_PROX:INTRON	ZNF136	ENSG00000196646.12	ENST00000439995.5:ENST00000425827.5:ENST00000652580.1:ENST00000343979.6:ENST00000418338.1	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	3.83018	3.98302	4.13586	0.0423385	0.031846	0.161744	0.13151
chr19	18534241	18534339	7153045	0	-	0.510204	(0.476,0.515]	chr19	722906	5	INTRON	INTRON	FKBP8	ENSG00000105701.16	ENST00000597960.7:ENST00000544835.7:ENST00000222308.8:ENST00000596558.6:ENST00000608443.6:ENST00000601844.5:ENST00000596015.1:ENST00000606531.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	21	2	3.83018	3.98302	4.13586	0.0423385	0.031846	0.161744	0.13151
chr2	42597379	42597479	761193	0	+	0.48	(0.476,0.515]	chr2	86298	151	INTRON	INTRON	MTA3	ENSG00000057935.14	ENST00000405592.5:ENST00000406652.5:ENST00000484780.5:ENST00000461256.5:ENST00000407270.7:ENST00000405094.2:ENST00000406911.5:ENST00000454356.5:ENST00000409019.5:ENST00000430763.5:ENST00000433553.5:ENST00000493983.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	21	2	3.83018	3.98302	4.13586	0.0423385	0.031846	0.161744	0.13151
chr2	159523353	159523453	1251600	0	-	0.5	(0.476,0.515]	chr2	132728	68	INTRON	INTRON	BAZ2B	ENSG00000123636.19	ENST00000392782.5:ENST00000392783.7:ENST00000467184.5:ENST00000541068.6:ENST00000437839.5:ENST00000483316.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	21	2	3.83018	3.98302	4.13586	0.0423385	0.031846	0.161744	0.13151
chr2	190232019	190232118	1297375	0	-	0.494949	(0.476,0.515]	chr2	135846	117	INTRON	INTRON	HIBCH	ENSG00000198130.16	ENST00000359678.10:ENST00000392332.7:ENST00000410045.5:ENST00000416732.5:ENST00000409820.2	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	3.83018	3.98302	4.13586	0.0423385	0.031846	0.161744	0.13151
chr2	235826611	235826711	1044676	0	+	0.5	(0.476,0.515]	chr2	111284	189	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1:ENST00000409538.5:ENST00000614409.4:ENST00000619456.4:ENST00000428334.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	21	2	3.83018	3.98302	4.13586	0.0423385	0.031846	0.161744	0.13151
chr22	40798228	40798326	7590165	0	-	0.489796	(0.476,0.515]	chr22	777192	5	INTRON	INTRON	SLC25A17	ENSG00000100372.15	ENST00000544408.5:ENST00000435456.7:ENST00000491545.5:ENST00000263255.10:ENST00000447566.5:ENST00000420970.5:ENST00000430221.5:ENST00000427084.5:ENST00000458600.5:ENST00000443810.5:ENST00000412879.5:ENST00000426396.5:ENST00000434193.5:ENST00000449676.5:ENST00000434185.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	21	2	3.83018	3.98302	4.13586	0.0423385	0.031846	0.161744	0.13151
chr5	71202827	71202927	2639674	0	-	0.49	(0.476,0.515]	chr5	250875	4	SS3_PROX	SS3_PROX:INTRON	GUSBP9	ENSG00000215630.6	ENST00000510138.2	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	0	21	2	3.83018	3.98302	4.13586	0.0423385	0.031846	0.161744	0.13151
chr5	173030705	173030805	2548640	0	+	0.5	(0.476,0.515]	chr5	243304	99	INTRON	INTRON	ATP6V0E1	ENSG00000113732.9	ENST00000519374.6:ENST00000519911.5:ENST00000265093.4	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	3.83018	3.98302	4.13586	0.0423385	0.031846	0.161744	0.13151
chr6	36542701	36542800	3089336	0	-	0.494949	(0.476,0.515]	chr6	288986	21	INTRON	INTRON	STK38	ENSG00000112079.9	ENST00000229812.8	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	3.83018	3.98302	4.13586	0.0423385	0.031846	0.161744	0.13151
chr6	68807489	68807589	2888041	0	+	0.49	(0.476,0.515]	chr6	273730	1677	INTRON	INTRON	ADGRB3	ENSG00000135298.15	ENST00000370598.6:ENST00000684661.1:ENST00000546190.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	21	2	3.83018	3.98302	4.13586	0.0423385	0.031846	0.161744	0.13151
chr6	143153484	143153584	2976112	0	+	0.49	(0.476,0.515]	chr6	279143	161	INTRON	INTRON	AIG1	ENSG00000146416.19	ENST00000367601.8:ENST00000447498.5:ENST00000646199.1:ENST00000357847.9:ENST00000629020.2:ENST00000275235.8:ENST00000494282.6:ENST00000458219.1	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	3.83018	3.98302	4.13586	0.0423385	0.031846	0.161744	0.13151
chr7	107508938	107509038	3612475	0	-	0.48	(0.476,0.515]	chr7	336698	281	INTRON	INTRON	COG5	ENSG00000164597.15	ENST00000297135.9:ENST00000347053.8:ENST00000393603.7:ENST00000475638.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	21	2	3.83018	3.98302	4.13586	0.0423385	0.031846	0.161744	0.13151
chrX	20232957	20233057	7773065	0	-	0.5	(0.476,0.515]	chrX	794562	141	INTRON	INTRON	RPS6KA3	ENSG00000177189.14	ENST00000379565.9:ENST00000643085.1:ENST00000645270.1:ENST00000643402.1:ENST00000644368.1:ENST00000647265.1:ENST00000645268.1:ENST00000643073.1:ENST00000646610.1:ENST00000643337.1:ENST00000642835.1:ENST00000644893.1:ENST00000438357.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	21	2	3.83018	3.98302	4.13586	0.0423385	0.031846	0.161744	0.13151
chr17	47215415	47215515	6621412	0	+	0.29	(0.28,0.32]	chr17	645806	11	INTRON	INTRON	MYL4	ENSG00000198336.9	ENST00000571981.5:ENST00000572316.5:ENST00000354968.5:ENST00000570772.5:ENST00000536623.6:ENST00000576874.5:ENST00000573747.6:ENST00000393450.5:ENST00000572303.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	246	2	3.19005	3.9829749999999997	4.7759	1.55181e-5	5.63414e-6	0.00296742	0.00177762
chr17	78110073	78110172	6844288	0	-	0.343434	(0.32,0.35]	chr17	677097	28	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TMC6	ENSG00000141524.18	ENST00000590602.6:ENST00000589217.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	71	2	2.53107	3.9828349999999997	5.4346	0.00860484	4.09682e-4	0.0784134	0.0181306
chr5	34930361	34930461	2337365	0	+	0.34	(0.32,0.35]	chr5	225724	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	DNAJC21	ENSG00000168724.17	ENST00000648817.1:ENST00000382021.2:ENST00000642851.1:ENST00000642675.1:ENST00000644357.1:ENST00000642285.1:ENST00000646714.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	48	2	3.13277	3.98282	4.83287	0.0095071	0.00458313	0.0817766	0.0622676
chr21	17602073	17602171	7432978	0	-	0.27551	[0,0.28]	chr21	758023	29	INTRON	INTRON	BTG3	ENSG00000154640.15	ENST00000348354.7:ENST00000339775.10:ENST00000496601.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	54	2	2.90797	3.9827250000000003	5.05748	0.0118539	0.0113653	0.0962115	0.0886611
chr19	10170236	10170334	7134617	0	-	0.377551	(0.35,0.378]	chr19	719202	15	INTRON	INTRON	DNMT1	ENSG00000130816.17	ENST00000340748.8:ENST00000359526.9:ENST00000592705.5:ENST00000679103.1:ENST00000677634.1:ENST00000676820.1:ENST00000677250.1:ENST00000677013.1:ENST00000677685.1:ENST00000677616.1:ENST00000676604.1:ENST00000678024.1:ENST00000676610.1:ENST00000678804.1:ENST00000679313.1:ENST00000677946.1:ENST00000586988.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	67	2	2.32464	3.9826499999999996	5.64066	0.0159285	1.14247e-4	0.101453	0.0091431
chr17	13008130	13008229	6726386	0	-	0.454545	(0.44,0.476]	chr17	660086	17	INTRON	INTRON	ELAC2	ENSG00000006744.19	ENST00000338034.9:ENST00000484122.5:ENST00000395962.6:ENST00000426905.7:ENST00000584650.5:ENST00000446899.5:ENST00000609345.1:ENST00000609101.5:ENST00000580504.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	65	2	2.78046	3.982635	5.18481	0.0028389	6.21872e-4	0.0473151	0.0223951
chr6	4134814	4134914	3048376	0	-	0.27	[0,0.28]	chr6	283725	3	SS5_PROX	SS5_PROX:INTRON	ECI2	ENSG00000198721.13	ENST00000380125.6:ENST00000496241.6:ENST00000380120.6:ENST00000361538.6:ENST00000380118.8:ENST00000464057.5:ENST00000478266.6:ENST00000465828.5:ENST00000495548.1:ENST00000489086.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	54	2	2.80396	3.98263	5.1613	0.0161429	0.00866441	0.109464	0.0787025
chr8	31142358	31142441	3729045	0	+	0.349398	(0.32,0.35]	chr8	346665	2	SS3_PROX	SS3_PROX:INTRON	WRN	ENSG00000165392.11	ENST00000650667.1:ENST00000298139.7:ENST00000521620.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	48	2	2.78073	3.98244	5.18415	0.01481	0.00333629	0.106702	0.0512081
chr3	28290703	28290802	1391039	0	+	0.333333	(0.32,0.35]	chr3	145643	270	INTRON	INTRON	CMC1	ENSG00000187118.14	ENST00000477739.1:ENST00000423894.5:ENST00000466830.6:ENST00000334841.10:ENST00000418849.2:ENST00000396610.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	77	2	2.22655	3.9823899999999997	5.73823	0.00823133	4.5635e-4	0.0812969	0.0196892
chr1	234476879	234476978	661413	0	-	0.585859	(0.57,1]	chr1	78262	37	INTRON	INTRON	TARBP1	ENSG00000059588.10	ENST00000040877.2	protein_coding	protein_coding	protein_coding	protein_coding	2	54	2	3.94571	3.982355	4.019	4.59736e-5	3.13356e-5	0.00552588	0.00467101
chr16	11760041	11760137	6445306	0	-	0.489583	(0.476,0.515]	chr16	620869	3	INTRON	INTRON	ZC3H7A	ENSG00000122299.12	ENST00000396516.6:ENST00000571405.5:ENST00000355758.9:ENST00000570862.1:ENST00000571198.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	45	2	3.35059	3.982305	4.61402	0.00947755	0.00171515	0.0817766	0.0381936
chr18	36062377	36062477	6963495	0	-	0.37	(0.35,0.378]	chr18	689080	91	INTRON	INTRON	RPRD1A	ENSG00000141425.18	ENST00000399022.9:ENST00000590898.5:ENST00000357384.8:ENST00000588737.5:ENST00000589050.1:ENST00000592674.1:ENST00000588459.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:nonsense_mediated_decay:processed_transcript	1	53	2	3.2953	3.982295	4.66929	0.00541617	0.0031465	0.066545000000000007	0.0500431
chr16	1846559	1846658	6430092	0	-	0.383838	(0.378,0.408]	chr16	618357	12	INTRON	INTRON	MEIOB	ENSG00000162039.17	ENST00000325962.9:ENST00000470044.5:ENST00000397344.7:ENST00000496541.6	protein_coding	protein_coding	protein_coding	protein_coding	1	45	2	3.22599	3.98219	4.73839	0.00837252	0.00288652	0.0774402	0.0494641
chr8	26352641	26352738	3716714	0	+	0.391753	(0.378,0.408]	chr8	345401	16	INTRON	INTRON	PPP2R2A	ENSG00000221914.11	ENST00000380737.8:ENST00000520329.5:ENST00000518254.5:ENST00000524169.5:ENST00000518397.5:ENST00000522535.5:ENST00000665949.1:ENST00000521095.5:ENST00000660435.1:ENST00000523925.5:ENST00000524099.5:ENST00000315985.7:ENST00000519636.5:ENST00000522482.5:ENST00000521557.5:ENST00000519439.5:ENST00000521484.5:ENST00000523964.5:ENST00000667651.1:ENST00000657943.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	45	2	3.22599	3.98219	4.73839	0.00837252	0.00288652	0.0774402	0.0494641
chr10	68332435	68332535	4440762	0	+	0.64	(0.57,1]	chr10	409479	2	SS5_PROX	SS5_PROX:INTRON	HNRNPH3	ENSG00000096746.18	ENST00000469172.5:ENST00000461310.5:ENST00000265866.12:ENST00000480987.5:ENST00000486854.5:ENST00000467249.1:ENST00000354695.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	17	332	2	3.8103	3.98217	4.15404	5.46437e-11	2.25331e-11	8.20494e-7	3.70116e-7
chr5	177031030	177031130	2553014	0	+	0.54	(0.515,0.57]	chr5	243771	74	INTRON	INTRON	ZNF346	ENSG00000113761.12	ENST00000512315.5:ENST00000358149.8:ENST00000506693.5:ENST00000503425.5:ENST00000508155.5:ENST00000511834.5:ENST00000503039.1:ENST00000513587.5:ENST00000510933.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	40	2	3.12663	3.9821350000000004	4.83764	0.00374498	0.00279527	0.0562234	0.0469265
chr8	30104822	30104922	3726722	0	+	0.55	(0.515,0.57]	chr8	346370	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS5_PROX:INTRON	LEPROTL1	ENSG00000104660.19	ENST00000321250.13:ENST00000518001.1:ENST00000650149.1:ENST00000520682.5:ENST00000442880.6:ENST00000523116.5:ENST00000520739.5:ENST00000518192.5:ENST00000519466.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	40	2	3.12663	3.9821350000000004	4.83764	0.00374498	0.00279527	0.0562234	0.0469265
chr12	57783697	57783797	5148713	0	+	0.39	(0.378,0.408]	chr12	487173	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TSFM	ENSG00000123297.20	ENST00000540550.6:ENST00000323833.12:ENST00000651899.1:ENST00000417094.5:ENST00000548851.5:ENST00000550559.5:ENST00000652027.2:ENST00000651066.1:ENST00000543727.5:ENST00000434359.5:ENST00000457189.1:ENST00000497617.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	60	2	2.41037	3.982125	5.55388	0.0100185	5.01023e-4	0.0880217	0.0206993
chr6	125086035	125086135	2952727	0	+	0.31	(0.28,0.32]	chr6	277749	32	UTR3	UTR3:EXON_MRNA	RNF217	ENSG00000146373.17	ENST00000521654.7:ENST00000560949.5:ENST00000519565.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	50	2	2.91832	3.982055	5.04579	0.0102484	0.00714672	0.089002	0.0723634
chr1	22091715	22091815	42609	0	+	0.2	[0,0.28]	chr1	5130	3	UTR3	UTR3:EXON_MRNA	ENSG00000289694:CDC42	ENSG00000289694.1:ENSG00000070831.18	ENST00000695856.1:ENST00000344548.8:ENST00000400259.5:ENST00000667384.2:ENST00000411827.2:ENST00000695858.1:ENST00000695859.1:ENST00000656825.1:ENST00000695796.1:ENST00000695797.1:ENST00000662562.2:ENST00000695798.1:ENST00000695799.1:ENST00000695800.1:ENST00000695801.1:ENST00000695802.1:ENST00000695862.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	417	2	3.56732	3.98205	4.39678	4.20238e-6	1.34657e-6	0.00148824	6.8311e-4
chr15	64987850	64987939	6205712	0	-	0.516854	(0.515,0.57]	chr15	591967	2	INTRON	INTRON	SPG21	ENSG00000090487.11	ENST00000204566.7:ENST00000433215.6:ENST00000561078.5:ENST00000416889.6:ENST00000558765.5:ENST00000557795.5:ENST00000560564.1:ENST00000559677.5:ENST00000558415.5:ENST00000560878.1:ENST00000558339.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	40	2	2.98677	3.981995	4.97722	0.00632549	0.00168681	0.0722266	0.0370386
chr5	119355922	119356018	2462474	0	+	0.520833	(0.515,0.57]	chr5	235860	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	TNFAIP8	ENSG00000145779.8	ENST00000274456.6:ENST00000388882.5:ENST00000513374.1:ENST00000503646.1:ENST00000504642.1	protein_coding	protein_coding	protein_coding	protein_coding	1	40	2	2.98677	3.981995	4.97722	0.00632549	0.00168681	0.0722266	0.0370386
chr12	111535602	111535701	5412589	0	-	0.393939	(0.378,0.408]	chr12	516916	99	INTRON	INTRON	ATXN2	ENSG00000204842.18	ENST00000642389.2:ENST00000608853.5:ENST00000672613.1:ENST00000673436.1:ENST00000643669.2:ENST00000616825.4:ENST00000389153.10:ENST00000550104.5:ENST00000483311.6:ENST00000672335.1:ENST00000492467.6:ENST00000673557.1:ENST00000673283.1:ENST00000673449.1:ENST00000535949.5:ENST00000542287.6:ENST00000644883.1:ENST00000647305.1:ENST00000671792.1:ENST00000392645.6:ENST00000672105.1:ENST00000471866.5:ENST00000549455.1:ENST00000548492.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	46	2	3.3797	3.981985	4.58427	0.0128325	0.00154501	0.0926667	0.0362716
chr16	89398749	89398849	6542675	0	-	0.41	(0.408,0.44]	chr16	634250	23	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000647238.1:ENST00000644045.1:ENST00000643147.1:ENST00000644139.1:ENST00000568512.6:ENST00000566973.1:ENST00000562211.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	97	2	3.69572	3.98194	4.26816	5.37849e-4	1.58618e-5	0.0214775	0.00300937
chr15	58920945	58921045	6194005	0	-	0.26	[0,0.28]	chr15	590110	1	SS5_PROX	SS5_PROX:INTRON	SLTM	ENSG00000137776.17	ENST00000380516.7:ENST00000492526.5:ENST00000557924.5:ENST00000558756.5:ENST00000249736.11:ENST00000559305.5:ENST00000480144.5:ENST00000628684.2:ENST00000559880.5:ENST00000558486.5:ENST00000560682.5:ENST00000557950.5:ENST00000559261.1:ENST00000560012.5:ENST00000484498.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	55	2	3.13926	3.981795	4.82433	0.0200334	0.00563224	0.109608	0.0678837
chr5	134387625	134387724	2488740	0	+	0.474747	(0.44,0.476]	chr5	237601	16	INTRON	INTRON	UBE2B	ENSG00000119048.9	ENST00000507277.2:ENST00000510021.5:ENST00000511807.1:ENST00000265339.7:ENST00000506787.5:ENST00000499038.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	44	2	3.2029	3.98179	4.76068	0.00653414	0.00308681	0.0699952	0.0510391
chr5	171983136	171983236	2772506	0	-	0.45	(0.44,0.476]	chr5	260958	55	INTRON	INTRON	FBXW11	ENSG00000072803.18	ENST00000296933.10:ENST00000517395.6:ENST00000265094.9:ENST00000393802.6:ENST00000523843.5:ENST00000519693.5:ENST00000520376.1:ENST00000522507.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	44	2	3.2029	3.98179	4.76068	0.00653414	0.00308681	0.0699952	0.0510391
chr7	74665764	74665864	3335327	0	+	0.39	(0.378,0.408]	chr7	310340	73	INTRON	INTRON	GTF2I	ENSG00000263001.8	ENST00000650807.1:ENST00000690345.1:ENST00000613513.1:ENST00000573035.6:ENST00000614986.4:ENST00000620879.4:ENST00000621734.4:ENST00000443166.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	45	2	2.78705	3.9816599999999998	5.17627	0.0135539	0.00208234	0.101363	0.0411801
chr2	161320570	161320670	901233	0	+	0.21	[0,0.28]	chr2	99704	13	INTRON	INTRON	PSMD14	ENSG00000115233.12	ENST00000409682.8:ENST00000437630.1	protein_coding	protein_coding	protein_coding	protein_coding	2	73	2	2.48813	3.981635	5.47514	0.00953591	0.00354561	0.0863913	0.0529186
chr1	96791831	96791930	168653	0	+	0.494949	(0.476,0.515]	chr1	18249	62	INTRON	INTRON	PTBP2	ENSG00000117569.19	ENST00000482253.5:ENST00000675735.1:ENST00000609116.5:ENST00000674951.1:ENST00000675080.1:ENST00000426398.3:ENST00000370197.5:ENST00000370198.5:ENST00000476419.5:ENST00000676292.1:ENST00000676096.1:ENST00000675365.1:ENST00000674579.1:ENST00000675401.1:ENST00000459735.5:ENST00000476783.5:ENST00000492905.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	45	2	2.65268	3.98163	5.31058	0.0201975	9.15544e-4	0.121243	0.0278396
chr12	132631214	132631314	5448561	0	-	0.5	(0.476,0.515]	chr12	521672	45	INTRON	INTRON	POLE	ENSG00000177084.18	ENST00000320574.10:ENST00000434528.4:ENST00000672742.1:ENST00000672002.1:ENST00000537064.5:ENST00000534922.5:ENST00000535270.5:ENST00000544692.5:ENST00000538196.1:ENST00000544870.5:ENST00000441786.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	45	2	2.65268	3.98163	5.31058	0.0201975	9.15544e-4	0.121243	0.0278396
chr7	75517318	75517418	3559043	0	-	0.46	(0.44,0.476]	chr7	331602	7	INTRON	INTRON	PMS2P3	ENSG00000127957.19	ENST00000693762.1:ENST00000394921.8:ENST00000430602.5:ENST00000418756.5:ENST00000437568.6:ENST00000533167.5:ENST00000691440.1:ENST00000422064.1:ENST00000438326.2	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript	4	155	2	3.0558	3.981495	4.90719	2.18249e-4	2.33359e-7	0.0135423	2.3186e-4
chr12	64798771	64798871	5156272	0	+	0.47	(0.44,0.476]	chr12	488149	110	INTRON	INTRON	TBC1D30	ENSG00000111490.15	ENST00000674237.1:ENST00000542120.6:ENST00000456757.6:ENST00000674171.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	21	2	3.8344	3.981415	4.12843	0.041276	0.0337192	0.161534	0.134145
chr15	63682371	63682471	6199345	0	-	0.47	(0.44,0.476]	chr15	591250	12	INTRON	INTRON	HERC1	ENSG00000103657.14	ENST00000443617.7	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	3.8344	3.981415	4.12843	0.041276	0.0337192	0.161534	0.134145
chr15	89875020	89875119	6257651	0	-	0.454545	(0.44,0.476]	chr15	597081	31	INTRON	INTRON	AP3S2:ARPIN-AP3S2	ENSG00000157823.17:ENSG00000250021.7	ENST00000336418.9:ENST00000398333.7:ENST00000423566.6:ENST00000558011.5:ENST00000560940.5:ENST00000557999.5:ENST00000558806.5:ENST00000559162.5:ENST00000558999.5:ENST00000559629.1:ENST00000558648.5:ENST00000560184.5:ENST00000560224.1:ENST00000560251.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	21	2	3.8344	3.981415	4.12843	0.041276	0.0337192	0.161534	0.134145
chr16	8011523	8011623	6440624	0	-	0.46	(0.44,0.476]	chr16	620351	39	INTRON	INTRON	ENSG00000260289	ENSG00000260289.2	ENST00000670665.1:ENST00000654046.1:ENST00000567103.2	lncRNA	lncRNA	lncRNA	lncRNA	0	21	2	3.8344	3.981415	4.12843	0.041276	0.0337192	0.161534	0.134145
chr16	14436531	14436623	6447873	0	-	0.445652	(0.44,0.476]	chr16	621164	10	UTR3	UTR3:EXON_MRNA	PARN	ENSG00000140694.17	ENST00000651865.1:ENST00000437198.7:ENST00000651348.1:ENST00000650990.1:ENST00000651760.1:ENST00000652541.1:ENST00000652727.1:ENST00000652066.1:ENST00000651300.1:ENST00000420015.6:ENST00000652051.1:ENST00000341484.11	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	21	2	3.8344	3.981415	4.12843	0.041276	0.0337192	0.161534	0.134145
chr16	14547512	14547611	6448994	0	-	0.474747	(0.44,0.476]	chr16	621213	62	INTRON	INTRON	PARN	ENSG00000140694.17	ENST00000651865.1:ENST00000437198.7:ENST00000651348.1:ENST00000650990.1:ENST00000651760.1:ENST00000652541.1:ENST00000652727.1:ENST00000652066.1:ENST00000651300.1:ENST00000420015.6:ENST00000652051.1:ENST00000341484.11:ENST00000539279.5:ENST00000651049.1:ENST00000650960.1:ENST00000651634.1:ENST00000564113.6:ENST00000564904.5:ENST00000652411.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	21	2	3.8344	3.981415	4.12843	0.041276	0.0337192	0.161534	0.134145
chr16	87736032	87736132	6538370	0	-	0.45	(0.44,0.476]	chr16	633530	50	INTRON	INTRON	KLHDC4	ENSG00000104731.14	ENST00000567298.5:ENST00000270583.10:ENST00000347925.9:ENST00000353170.9:ENST00000316853.10:ENST00000566349.5:ENST00000562155.5:ENST00000622456.4:ENST00000562261.1:ENST00000566661.5:ENST00000567513.1:ENST00000564484.5:ENST00000565328.5:ENST00000569747.5:ENST00000564396.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	21	2	3.8344	3.981415	4.12843	0.041276	0.0337192	0.161534	0.134145
chr17	3816670	3816770	6707901	0	-	0.45	(0.44,0.476]	chr17	656981	4	SS3_PROX	SS3_PROX:INTRON	NCBP3	ENSG00000074356.17	ENST00000389005.6:ENST00000574911.5:ENST00000575815.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	21	2	3.8344	3.981415	4.12843	0.041276	0.0337192	0.161534	0.134145
chr17	45637367	45637465	6618301	0	+	0.469388	(0.44,0.476]	chr17	645450	12	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	LINC02210	ENSG00000204650.14	ENST00000591271.5:ENST00000455565.5:ENST00000586362.1	transcribed_unitary_pseudogene	processed_transcript	transcribed_unitary_pseudogene	processed_transcript	0	21	2	3.8344	3.981415	4.12843	0.041276	0.0337192	0.161534	0.134145
chr17	47551622	47551721	6621792	0	+	0.464646	(0.44,0.476]	chr17	645851	29	INTRON	INTRON	NPEPPS	ENSG00000141279.17	ENST00000525007.5:ENST00000525037.5:ENST00000677710.1:ENST00000530173.6:ENST00000526247.6:ENST00000677226.1:ENST00000322157.9:ENST00000678461.1:ENST00000532729.6:ENST00000533573.5:ENST00000677120.1:ENST00000678909.1:ENST00000678496.1:ENST00000678262.1:ENST00000677370.1:ENST00000677664.1:ENST00000528751.6:ENST00000527298.5:ENST00000534691.1:ENST00000602788.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	21	2	3.8344	3.981415	4.12843	0.041276	0.0337192	0.161534	0.134145
chr2	26079767	26079867	713556	0	+	0.47	(0.44,0.476]	chr2	82440	371	INTRON	INTRON	RAB10	ENSG00000084733.11	ENST00000264710.5:ENST00000495146.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	21	2	3.8344	3.981415	4.12843	0.041276	0.0337192	0.161534	0.134145
chr2	58128317	58128416	784788	0	+	0.464646	(0.44,0.476]	chr2	88219	47	INTRON	INTRON	VRK2	ENSG00000028116.18	ENST00000648897.1:ENST00000417641.6:ENST00000435505.6:ENST00000412104.6:ENST00000432057.2:ENST00000440705.6:ENST00000340157.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	21	2	3.8344	3.981415	4.12843	0.041276	0.0337192	0.161534	0.134145
chr20	37221297	37221396	7266562	0	+	0.454545	(0.44,0.476]	chr20	738439	71	INTRON	INTRON	RPN2	ENSG00000118705.17	ENST00000373622.9:ENST00000237530.11	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	3.8344	3.981415	4.12843	0.041276	0.0337192	0.161534	0.134145
chr22	39023114	39023214	7514875	0	+	0.47	(0.44,0.476]	chr22	767768	1	SS5_PROX	SS5_PROX:INTRON	APOBEC3D	ENSG00000243811.12	ENST00000427494.6:ENST00000216099.13:ENST00000622217.3	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	3.8344	3.981415	4.12843	0.041276	0.0337192	0.161534	0.134145
chr3	183795946	183796044	1581292	0	+	0.44898	(0.44,0.476]	chr3	163143	26	INTRON	INTRON	YEATS2	ENSG00000163872.16	ENST00000305135.10	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	3.8344	3.981415	4.12843	0.041276	0.0337192	0.161534	0.134145
chr4	112237458	112237557	2021657	0	+	0.454545	(0.44,0.476]	chr4	201007	49	INTRON	INTRON	AP1AR	ENSG00000138660.12	ENST00000510527.5:ENST00000274000.10:ENST00000502954.1:ENST00000309703.10:ENST00000506522.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	21	2	3.8344	3.981415	4.12843	0.041276	0.0337192	0.161534	0.134145
chr6	30605508	30605594	3077235	0	-	0.465116	(0.44,0.476]	chr6	286246	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PPP1R10	ENSG00000204569.10	ENST00000376511.7:ENST00000476704.1:ENST00000461593.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	21	2	3.8344	3.981415	4.12843	0.041276	0.0337192	0.161534	0.134145
chr6	89765012	89765111	3161474	0	-	0.454545	(0.44,0.476]	chr6	294808	21	INTRON	INTRON	MDN1	ENSG00000112159.12	ENST00000369393.8:ENST00000629399.2:ENST00000439638.1	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	3.8344	3.981415	4.12843	0.041276	0.0337192	0.161534	0.134145
chr7	103139673	103139773	3592801	0	-	0.45	(0.44,0.476]	chr7	335302	105	INTRON	INTRON	NAPEPLD	ENSG00000161048.12	ENST00000341533.8:ENST00000465647.6:ENST00000417955.5:ENST00000422589.5:ENST00000427257.5:ENST00000418294.1:ENST00000479761.1:ENST00000425379.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	21	2	3.8344	3.981415	4.12843	0.041276	0.0337192	0.161534	0.134145
chr7	128661392	128661491	3408353	0	+	0.454545	(0.44,0.476]	chr7	318418	4	EXON_LNCRNA	EXON_LNCRNA	ENSG00000288884	ENSG00000288884.1	ENST00000690978.1	lncRNA	lncRNA	lncRNA	lncRNA	0	21	2	3.8344	3.981415	4.12843	0.041276	0.0337192	0.161534	0.134145
chr7	149272011	149272111	3445920	0	+	0.46	(0.44,0.476]	chr7	321456	44	INTRON	INTRON	ZNF783	ENSG00000204946.10	ENST00000378052.5:ENST00000434415.6:ENST00000476295.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	21	2	3.8344	3.981415	4.12843	0.041276	0.0337192	0.161534	0.134145
chr9	129117528	129117627	4209061	0	+	0.464646	(0.44,0.476]	chr9	385601	52	INTRON	INTRON	PTPA	ENSG00000119383.21	ENST00000358994.9:ENST00000455292.6:ENST00000357197.8:ENST00000348141.9:ENST00000347048.8:ENST00000337738.6:ENST00000355007.7:ENST00000393370.7:ENST00000414331.5:ENST00000452489.6:ENST00000453358.5	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	3.8344	3.981415	4.12843	0.041276	0.0337192	0.161534	0.134145
chr9	136903591	136903691	4222363	0	+	0.45	(0.44,0.476]	chr9	387820	8	INTRON	INTRON	TRAF2	ENSG00000127191.18	ENST00000419057.5:ENST00000429509.5:ENST00000247668.7:ENST00000474950.5:ENST00000482854.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	21	2	3.8344	3.981415	4.12843	0.041276	0.0337192	0.161534	0.134145
chr5	140678803	140678902	2738341	0	-	0.424242	(0.408,0.44]	chr5	257958	9	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	HARS1	ENSG00000170445.16	ENST00000431330.7:ENST00000675366.1:ENST00000674523.1:ENST00000676327.1:ENST00000675094.1:ENST00000506579.6:ENST00000675851.1:ENST00000675698.1:ENST00000675763.1:ENST00000675967.1:ENST00000675355.1:ENST00000675898.1:ENST00000457527.6:ENST00000675827.1:ENST00000504156.7:ENST00000307633.7:ENST00000504366.5:ENST00000509087.2:ENST00000438307.6:ENST00000512396.6:ENST00000645491.1:ENST00000675204.1:ENST00000643686.1:ENST00000646229.1:ENST00000507746.7:ENST00000415192.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	64	2	2.6117	3.9812849999999997	5.35087	0.00555224	3.00323e-4	0.0648867	0.0155054
chr5	137989813	137989913	2730363	0	-	0.32	(0.28,0.32]	chr5	256973	11	INTRON	INTRON	FAM13B	ENSG00000031003.11	ENST00000689681.1:ENST00000033079.7:ENST00000425075.6:ENST00000420893.6	protein_coding	protein_coding	protein_coding	protein_coding	2	68	2	2.70831	3.981095	5.25388	0.00385849	0.00378444	0.0562562	0.0542786
chr6	37434547	37434643	2856514	0	+	0.375	(0.35,0.378]	chr6	270082	8	INTRON	INTRON	CMTR1	ENSG00000137200.13	ENST00000471097.1:ENST00000455891.5:ENST00000373451.9	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	47	2	3.31736	3.980965	4.64457	0.012652	0.00211072	0.0926667	0.0425419
chr14	96862723	96862822	5811533	0	+	0.313131	(0.28,0.32]	chr14	551088	16	INTRON	INTRON	VRK1	ENSG00000100749.9	ENST00000553683.2:ENST00000680538.1:ENST00000681195.1:ENST00000681524.1:ENST00000680084.1:ENST00000679533.1:ENST00000681598.1:ENST00000679727.1:ENST00000679758.1:ENST00000679977.1:ENST00000680387.1:ENST00000680335.1:ENST00000680683.1:ENST00000681474.1:ENST00000216639.8:ENST00000681363.1:ENST00000681538.1:ENST00000680922.1:ENST00000679903.1:ENST00000681101.1:ENST00000681419.1:ENST00000679941.1:ENST00000680849.1:ENST00000679770.1:ENST00000681493.1:ENST00000681778.1:ENST00000680993.1:ENST00000681355.1:ENST00000681695.1:ENST00000681344.1:ENST00000680007.1:ENST00000679918.1:ENST00000679816.1:ENST00000680756.1:ENST00000681249.1:ENST00000680526.1:ENST00000679365.1:ENST00000680851.1:ENST00000679506.1:ENST00000679650.1:ENST00000679462.1:ENST00000680724.1:ENST00000681061.1:ENST00000681677.1:ENST00000679843.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	50	2	2.86113	3.98091	5.10069	0.0122675	0.00610574	0.0969406	0.0676501
chr21	22253808	22253908	7384906	0	+	0.29	(0.28,0.32]	chr21	752727	406	INTRON	INTRON	ENSG00000226043	ENSG00000226043.2	ENST00000667099.1:ENST00000654607.1:ENST00000444130.1	lncRNA	lncRNA	lncRNA	lncRNA	1	50	2	2.86113	3.98091	5.10069	0.0122675	0.00610574	0.0969406	0.0676501
chr16	23911743	23911843	6324518	0	+	0.41	(0.408,0.44]	chr16	605701	180	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000498739.1	protein_coding	protein_coding	protein_coding	protein_coding	1	47	2	2.71911	3.9808900000000005	5.24267	0.0189489	4.83767e-4	0.108861	0.0199261
chr7	152204419	152204515	3678939	0	-	0.489583	(0.476,0.515]	chr7	341517	9	UTR3	UTR3:EXON_MRNA:INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000683200.1:ENST00000682283.1:ENST00000473186.5:ENST00000679882.1:ENST00000680969.1:ENST00000681033.1:ENST00000682176.1:ENST00000679645.1:ENST00000683254.1:ENST00000684550.1:ENST00000489110.2:ENST00000681838.1:ENST00000683490.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	59	2	2.37731	3.98078	5.58425	0.0111793	2.97744e-4	0.0937192	0.0160246
chr5	62310073	62310170	2362070	0	+	0.474227	(0.44,0.476]	chr5	227721	12	INTRON	INTRON	KIF2A	ENSG00000068796.19	ENST00000401507.7:ENST00000407818.8:ENST00000674632.1:ENST00000674916.1:ENST00000676413.1:ENST00000676122.1:ENST00000674751.1:ENST00000514082.6:ENST00000675085.1:ENST00000504883.2:ENST00000381103.7:ENST00000676271.1:ENST00000512541.5:ENST00000674733.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	206	2	3.91681	3.980775	4.04474	9.34903e-6	1.96015e-7	0.00236249	2.07345e-4
chr12	132772607	132772707	5449621	0	-	0.37	(0.35,0.378]	chr12	521962	22	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	GOLGA3	ENSG00000090615.16	ENST00000204726.9:ENST00000450791.8:ENST00000693666.1:ENST00000688114.1:ENST00000687190.1:ENST00000690511.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	316	2	3.72748	3.98058	4.23368	2.14178e-6	8.2251e-8	0.00102041	1.23896e-4
chr7	112784253	112784347	3624343	0	-	0.457447	(0.44,0.476]	chr7	337164	6	CDS	CDS:EXON_MRNA:SS3_PROX:INTRON	TMEM168	ENSG00000146802.13	ENST00000312814.11:ENST00000454074.5:ENST00000447395.5:ENST00000449743.1:ENST00000441474.1	protein_coding	protein_coding	protein_coding	protein_coding	3	70	2	2.26452	3.9803	5.69608	0.00654074	2.01872e-4	0.0735539	0.0129814
chr17	67184426	67184525	6825208	0	-	0.373737	(0.35,0.378]	chr17	674490	43	INTRON	INTRON	HELZ	ENSG00000198265.12	ENST00000358691.10:ENST00000579953.5:ENST00000580168.5:ENST00000417253.7:ENST00000578783.1:ENST00000578938.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:nonsense_mediated_decay:processed_transcript	2	63	2	2.91516	3.98014	5.04512	0.00393262	0.0013628	0.0548259	0.0339121
chr9	91931121	91931221	4285077	0	-	0.25	[0,0.28]	chr9	393926	68	INTRON	INTRON	ROR2	ENSG00000169071.15	ENST00000375715.5:ENST00000375708.4:ENST00000495386.5:ENST00000546883.1:ENST00000476440.1:ENST00000493846.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	88	2	2.22743	3.980095	5.73276	0.0097118	0.00156565	0.0875962	0.0360583
chr4	128002260	128002359	2042197	0	+	0.454545	(0.44,0.476]	chr4	202777	1	INTRON	INTRON	ABHD18	ENSG00000164074.16	ENST00000398965.5:ENST00000473040.6:ENST00000444616.5:ENST00000645843.2:ENST00000388795.9:ENST00000513371.1:ENST00000611882.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	48	2	2.46135	3.9800649999999997	5.49878	0.0374637	1.52058e-4	0.140008	0.0106137
chr1	89864147	89864247	159957	0	+	0.38	(0.378,0.408]	chr1	17285	171	INTRON	INTRON	LRRC8D	ENSG00000171492.14	ENST00000525774.5:ENST00000337338.9:ENST00000394593.7:ENST00000532201.5:ENST00000414841.1:ENST00000527156.1:ENST00000441269.2	protein_coding	protein_coding	protein_coding	protein_coding	1	48	2	2.72993	3.9800199999999997	5.23011	0.0188736	5.72873e-4	0.108861	0.0217398
chr1	28006103	28006202	408171	0	-	0.252525	[0,0.28]	chr1	49164	13	INTRON	INTRON	EYA3	ENSG00000158161.16	ENST00000373871.8:ENST00000540618.5:ENST00000436342.6:ENST00000373864.5:ENST00000373863.3:ENST00000495923.5:ENST00000471498.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	54	2	2.95729	3.97996	5.00263	0.013055	0.0101824	0.093385	0.089002
chr6	37833409	37833509	2857169	0	+	0.27	[0,0.28]	chr6	270225	130	INTRON	INTRON	ZFAND3	ENSG00000156639.12	ENST00000287218.9:ENST00000373391.6:ENST00000474522.5	protein_coding	protein_coding	protein_coding	protein_coding	1	54	2	2.95729	3.97996	5.00263	0.013055	0.0101824	0.093385	0.089002
chr10	50342106	50342193	4617864	0	-	0.344828	(0.32,0.35]	chr10	425414	3	INTRON	INTRON	SGMS1	ENSG00000198964.14	ENST00000429490.5:ENST00000361781.7:ENST00000361543.3:ENST00000626236.2:ENST00000619438.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	88	2	2.02327	3.9798050000000003	5.93634	0.00956045	2.02056e-4	0.0863913	0.0129814
chr21	14487612	14487712	7427608	0	-	0.34	(0.32,0.35]	chr21	757722	11	INTRON	INTRON	SAMSN1	ENSG00000155307.19	ENST00000647101.1:ENST00000644288.1:ENST00000400564.5:ENST00000400566.6:ENST00000285670.7:ENST00000619120.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	52	2	2.57263	3.9797350000000002	5.38684	0.0312297	5.01164e-4	0.13151	0.020217099999999998
chr1	219180224	219180324	318441	0	+	0.48	(0.476,0.515]	chr1	36451	4	INTRON	INTRON	LYPLAL1	ENSG00000143353.12	ENST00000460522.5:ENST00000366927.3:ENST00000496776.5:ENST00000366928.10:ENST00000477938.5:ENST00000463964.5:ENST00000483635.5:ENST00000474379.5:ENST00000469590.5:ENST00000478794.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	44	2	3.19119	3.97973	4.76827	0.00600704	0.00325748	0.0674604	0.0524329
chr7	119712262	119712362	3628460	0	-	0.48	(0.476,0.515]	chr7	337319	69	INTRON	INTRON	LINC02476	ENSG00000225546.6	ENST00000660268.1:ENST00000431071.5	lncRNA	lncRNA	lncRNA	lncRNA	1	44	2	3.19119	3.97973	4.76827	0.00600704	0.00325748	0.0674604	0.0524329
chr6	43770309	43770408	2872059	0	+	0.40404	(0.378,0.408]	chr6	272340	2	UTR5	UTR5:EXON_MRNA	VEGFA	ENSG00000112715.26	ENST00000476772.5:ENST00000672860.3:ENST00000372067.8:ENST00000425836.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	27	1063	2	3.84868	3.979485	4.11029	2.54881e-8	1.7234e-11	5.48456e-5	4.06536e-7
chr12	104625284	104625384	5212371	0	+	0.49	(0.476,0.515]	chr12	493329	229	INTRON	INTRON	CHST11	ENSG00000171310.11	ENST00000303694.6:ENST00000549260.5:ENST00000549016.1	protein_coding	protein_coding	protein_coding	protein_coding	1	44	2	2.80729	3.9793600000000002	5.15143	0.0126008	0.00166579	0.0980703	0.0369207
chr8	38295495	38295595	3936537	0	-	0.49	(0.476,0.515]	chr8	360736	3	SS5_PROX	SS5_PROX:INTRON	NSD3	ENSG00000147548.17	ENST00000317025.13:ENST00000433384.6:ENST00000527502.5	protein_coding	protein_coding	protein_coding	protein_coding	1	44	2	2.80729	3.9793600000000002	5.15143	0.0126008	0.00166579	0.0980703	0.0369207
chr3	88087001	88087101	1457305	0	+	0.52	(0.515,0.57]	chr3	153170	2	INTRON	INTRON	ZNF654	ENSG00000175105.8	ENST00000636215.2:ENST00000473136.4:ENST00000623596.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	77	2	2.02107	3.979355	5.93764	0.00910188	6.58036e-6	0.0809976	0.00181159
chr19	10223457	10223553	7135174	0	-	0.46875	(0.44,0.476]	chr19	719288	22	UTR3	UTR3:EXON_MRNA:INTRON	DNMT1:S1PR2	ENSG00000130816.17:ENSG00000267534.4	ENST00000588952.5:ENST00000592342.5:ENST00000646641.1	protein_coding	protein_coding	protein_coding	protein_coding	1	48	2	3.17572	3.9793250000000002	4.78293	0.00427037	0.00292033	0.0573912	0.0494641
chr17	57301662	57301762	6633204	0	+	0.43	(0.408,0.44]	chr17	648017	65	INTRON	INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000581776.5:ENST00000674961.1:ENST00000582453.5:ENST00000675656.1:ENST00000322684.7:ENST00000579590.5:ENST00000676073.1:ENST00000675822.1:ENST00000442934.6:ENST00000579180.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	80	2	2.15894	3.979285	5.79963	0.00504142	1.39468e-4	0.0646039	0.0107072
chr14	96288759	96288858	5965565	0	-	0.414141	(0.408,0.44]	chr14	566642	24	INTRON	INTRON	ATG2B	ENSG00000066739.12	ENST00000359933.6	protein_coding	protein_coding	protein_coding	protein_coding	1	44	2	3.20437	3.979175	4.75398	0.00703931	0.00306596	0.0718189	0.0509893
chr17	50996064	50996146	6795739	0	-	0.414634	(0.408,0.44]	chr17	670905	1	SS5_PROX	SS5_PROX:INTRON	SPAG9	ENSG00000008294.22	ENST00000262013.12:ENST00000510283.5:ENST00000505279.5:ENST00000357122.8:ENST00000514613.5:ENST00000505173.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	44	2	3.20437	3.979175	4.75398	0.00703931	0.00306596	0.0718189	0.0509893
chr2	202280485	202280583	985064	0	+	0.5	(0.476,0.515]	chr2	105723	18	INTRON	INTRON	NOP58	ENSG00000055044.11	ENST00000488403.5:ENST00000426814.5:ENST00000264279.10:ENST00000472050.5:ENST00000467734.5:ENST00000492688.5:ENST00000478941.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	80	2	2.14389	3.9790449999999997	5.8142	0.00540862	1.0551e-4	0.066545000000000007	0.00920724
chr19	9825296	9825396	7134105	0	-	0.46	(0.44,0.476]	chr19	719015	63	INTRON	INTRON	FBXL12	ENSG00000127452.9	ENST00000585379.5	protein_coding	protein_coding	protein_coding	protein_coding	1	47	2	2.60774	3.97903	5.35032	0.0255874	3.02713e-4	0.120269	0.0155054
chr9	129130362	129130456	4209200	0	+	0.468085	(0.44,0.476]	chr9	385636	9	INTRON	INTRON	PTPA	ENSG00000119383.21	ENST00000358994.9:ENST00000455292.6:ENST00000357197.8:ENST00000348141.9:ENST00000347048.8:ENST00000337738.6:ENST00000355007.7:ENST00000393370.7:ENST00000414331.5:ENST00000452489.6:ENST00000453358.5:ENST00000417504.5	protein_coding	protein_coding	protein_coding	protein_coding	1	47	2	2.60774	3.97903	5.35032	0.0255874	3.02713e-4	0.120269	0.0155054
chr15	55216494	55216594	6180162	0	-	0.43	(0.408,0.44]	chr15	589112	104	INTRON	INTRON	RAB27A	ENSG00000069974.16	ENST00000336787.6:ENST00000396307.6:ENST00000564609.5:ENST00000569493.5:ENST00000566877.5	protein_coding	protein_coding	protein_coding	protein_coding	1	44	2	2.82042	3.97872	5.13702	0.0120121	0.00202889	0.0962115	0.04086
chr2	10321758	10321858	691817	0	+	0.42	(0.408,0.44]	chr2	81125	175	INTRON	INTRON	HPCAL1	ENSG00000115756.13	ENST00000423674.5:ENST00000307845.8:ENST00000381765.7	protein_coding	protein_coding	protein_coding	protein_coding	1	44	2	2.82042	3.97872	5.13702	0.0120121	0.00202889	0.0962115	0.04086
chr1	154973608	154973677	559842	0	-	0.521739	(0.515,0.57]	chr1	66663	1	SS3_PROX	SS3_PROX:INTRON	SHC1	ENSG00000160691.19	ENST00000368450.5:ENST00000368453.8:ENST00000412170.5:ENST00000366442.2	protein_coding	protein_coding	protein_coding	protein_coding	3	64	2	2.22166	3.97864	5.73562	0.00735516	6.01042e-5	0.0765982	0.00680853
chr2	174247197	174247287	1270846	0	-	0.466667	(0.44,0.476]	chr2	134308	4	UTR5	UTR5:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	OLA1	ENSG00000138430.16	ENST00000284719.8:ENST00000344357.9:ENST00000428402.6:ENST00000409546.5:ENST00000427472.2	protein_coding	protein_coding	protein_coding	protein_coding	1	47	2	3.02751	3.9785950000000003	4.92968	0.00715968	0.00171443	0.0723634	0.0381936
chr4	183658628	183658728	2303323	0	-	0.47	(0.44,0.476]	chr4	222728	3	SS5_PROX	SS5_PROX:INTRON	RWDD4	ENSG00000182552.15	ENST00000326397.10:ENST00000327570.13:ENST00000510968.5:ENST00000510702.5:ENST00000512740.1:ENST00000514322.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	47	2	3.02751	3.9785950000000003	4.92968	0.00715968	0.00171443	0.0723634	0.0381936
chr10	79782018	79782118	4657235	0	-	0.41	(0.408,0.44]	chr10	429007	153	INTRON	INTRON	NUTM2B-AS1	ENSG00000225484.7	ENST00000671459.1:ENST00000601369.6:ENST00000662025.1:ENST00000670682.1:ENST00000619625.4:ENST00000658528.1:ENST00000477192.6:ENST00000610681.1:ENST00000665716.1:ENST00000483080.6:ENST00000661316.1:ENST00000488805.5	lncRNA	lncRNA	lncRNA	lncRNA	0	21	2	3.83494	3.9784050000000004	4.12187	0.0411442	0.0354689	0.161534	0.137535
chr11	87183383	87183483	4844270	0	+	0.44	(0.408,0.44]	chr11	451862	256	INTRON	INTRON	TMEM135	ENSG00000166575.17	ENST00000340353.11:ENST00000305494.6:ENST00000532959.5:ENST00000525018.5	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	3.83494	3.9784050000000004	4.12187	0.0411442	0.0354689	0.161534	0.137535
chr12	107039056	107039156	5404483	0	-	0.43	(0.408,0.44]	chr12	515721	165	INTRON	INTRON	CRY1	ENSG00000008405.12	ENST00000008527.10:ENST00000552790.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	21	2	3.83494	3.9784050000000004	4.12187	0.0411442	0.0354689	0.161534	0.137535
chr12	110009816	110009915	5224788	0	+	0.424242	(0.408,0.44]	chr12	495000	97	INTRON	INTRON	ANKRD13A	ENSG00000076513.17	ENST00000553025.5:ENST00000261739.9:ENST00000550404.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	21	2	3.83494	3.9784050000000004	4.12187	0.0411442	0.0354689	0.161534	0.137535
chr13	20857752	20857851	5555893	0	-	0.424242	(0.408,0.44]	chr13	531012	16	INTRON	INTRON	XPO4	ENSG00000132953.18	ENST00000255305.11:ENST00000490513.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	21	2	3.83494	3.9784050000000004	4.12187	0.0411442	0.0354689	0.161534	0.137535
chr13	59972157	59972257	5602439	0	-	0.44	(0.408,0.44]	chr13	535461	6	INTRON	INTRON	DIAPH3	ENSG00000139734.19	ENST00000400324.9:ENST00000377908.6:ENST00000400319.5:ENST00000400320.5:ENST00000267215.8:ENST00000465066.5:ENST00000498416.2	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	3.83494	3.9784050000000004	4.12187	0.0411442	0.0354689	0.161534	0.137535
chr15	39212789	39212889	6148485	0	-	0.44	(0.408,0.44]	chr15	584979	169	INTRON	INTRON	ENSG00000259345	ENSG00000259345.7	ENST00000561058.5:ENST00000560484.1:ENST00000558209.1:ENST00000664681.1	lncRNA	lncRNA	lncRNA	lncRNA	0	21	2	3.83494	3.9784050000000004	4.12187	0.0411442	0.0354689	0.161534	0.137535
chr16	57444274	57444372	6493287	0	-	0.438776	(0.408,0.44]	chr16	628040	29	INTRON	INTRON	CIAPIN1	ENSG00000005194.15	ENST00000567518.5:ENST00000394391.9:ENST00000565961.5:ENST00000569370.5:ENST00000568940.5:ENST00000567751.5:ENST00000565786.5:ENST00000565368.5:ENST00000563341.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	21	2	3.83494	3.9784050000000004	4.12187	0.0411442	0.0354689	0.161534	0.137535
chr19	10708750	10708850	7013709	0	+	0.43	(0.408,0.44]	chr19	696884	4	SS3_PROX	SS3_PROX:INTRON	QTRT1	ENSG00000213339.9	ENST00000589488.5:ENST00000250237.10:ENST00000421333.6:ENST00000590705.5:ENST00000585885.5:ENST00000587599.5:ENST00000591643.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	21	2	3.83494	3.9784050000000004	4.12187	0.0411442	0.0354689	0.161534	0.137535
chr2	60765187	60765287	785217	0	+	0.44	(0.408,0.44]	chr2	88275	30	INTRON	INTRON	PAPOLG	ENSG00000115421.13	ENST00000496283.5:ENST00000414060.5:ENST00000238714.8:ENST00000453839.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	21	2	3.83494	3.9784050000000004	4.12187	0.0411442	0.0354689	0.161534	0.137535
chr2	178576647	178576738	931492	0	+	0.428571	(0.408,0.44]	chr2	102343	2	INTRON	INTRON	TTN-AS1	ENSG00000237298.10	ENST00000419746.5:ENST00000630096.2:ENST00000659121.1:ENST00000456053.5:ENST00000590773.6:ENST00000592600.6:ENST00000592630.5:ENST00000592750.5:ENST00000591332.5:ENST00000586707.6:ENST00000653807.1:ENST00000585451.5:ENST00000657023.1:ENST00000626117.2:ENST00000590807.5:ENST00000626954.2:ENST00000586452.5:ENST00000592689.5:ENST00000586831.5:ENST00000625480.2:ENST00000628826.2:ENST00000628296.2:ENST00000626138.2:ENST00000625536.2:ENST00000438095.1:ENST00000590932.5	lncRNA	lncRNA	lncRNA	lncRNA	0	21	2	3.83494	3.9784050000000004	4.12187	0.0411442	0.0354689	0.161534	0.137535
chr2	235988015	235988115	1046295	0	+	0.42	(0.408,0.44]	chr2	111314	190	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000336665.9:ENST00000635100.1:ENST00000409538.5:ENST00000614409.4:ENST00000428334.6:ENST00000448025.5:ENST00000418654.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	21	2	3.83494	3.9784050000000004	4.12187	0.0411442	0.0354689	0.161534	0.137535
chr20	4912180	4912279	7310080	0	-	0.424242	(0.408,0.44]	chr20	744396	93	INTRON	INTRON	SLC23A2	ENSG00000089057.15	ENST00000379333.5:ENST00000338244.6:ENST00000468355.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	21	2	3.83494	3.9784050000000004	4.12187	0.0411442	0.0354689	0.161534	0.137535
chr3	45652049	45652149	1416681	0	+	0.43	(0.408,0.44]	chr3	148612	154	INTRON	INTRON	LIMD1	ENSG00000144791.10	ENST00000465039.5:ENST00000440097.5:ENST00000273317.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	21	2	3.83494	3.9784050000000004	4.12187	0.0411442	0.0354689	0.161534	0.137535
chr4	87051260	87051360	1994966	0	+	0.44	(0.408,0.44]	chr4	199057	11	INTRON	INTRON	AFF1	ENSG00000172493.23	ENST00000395146.9:ENST00000507468.5:ENST00000674009.1:ENST00000503477.5:ENST00000544085.6:ENST00000307808.10:ENST00000511722.5:ENST00000514970.2	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	3.83494	3.9784050000000004	4.12187	0.0411442	0.0354689	0.161534	0.137535
chr5	163379924	163380024	2769687	0	-	0.41	(0.408,0.44]	chr5	260675	1226	INTRON	INTRON	ENSG00000254186	ENSG00000254186.3	ENST00000646617.1:ENST00000503504.1	lncRNA	lncRNA	lncRNA	lncRNA	0	21	2	3.83494	3.9784050000000004	4.12187	0.0411442	0.0354689	0.161534	0.137535
chr6	622540	622640	3040248	0	-	0.42	(0.408,0.44]	chr6	283338	26	INTRON	INTRON	EXOC2	ENSG00000112685.14	ENST00000230449.9	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	3.83494	3.9784050000000004	4.12187	0.0411442	0.0354689	0.161534	0.137535
chr6	135308039	135308138	3226222	0	-	0.424242	(0.408,0.44]	chr6	299914	32	INTRON	INTRON	AHI1	ENSG00000135541.22	ENST00000681022.1:ENST00000681841.1:ENST00000680965.1:ENST00000681522.1:ENST00000681365.1:ENST00000681332.1:ENST00000680826.1:ENST00000679711.1:ENST00000527681.2:ENST00000681331.1:ENST00000367800.8:ENST00000265602.11:ENST00000681196.1:ENST00000681718.1:ENST00000679672.1:ENST00000681828.1:ENST00000679668.1:ENST00000680840.1:ENST00000457866.6:ENST00000679925.1:ENST00000680561.1:ENST00000680071.1:ENST00000679742.1:ENST00000681860.1:ENST00000680119.1:ENST00000680337.1:ENST00000681340.1:ENST00000679589.1:ENST00000679890.1:ENST00000679434.1:ENST00000475846.6:ENST00000679943.1:ENST00000681057.1:ENST00000681301.1:ENST00000681488.1:ENST00000679450.1:ENST00000533029.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	21	2	3.83494	3.9784050000000004	4.12187	0.0411442	0.0354689	0.161534	0.137535
chr6	157131630	157131729	3010720	0	+	0.414141	(0.408,0.44]	chr6	281167	205	INTRON	INTRON	ARID1B	ENSG00000049618.24	ENST00000346085.10:ENST00000636930.2:ENST00000647938.1:ENST00000350026.10:ENST00000674190.1:ENST00000414678.7:ENST00000319584.11:ENST00000452544.2:ENST00000635849.1:ENST00000637003.1:ENST00000637904.1:ENST00000637810.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	21	2	3.83494	3.9784050000000004	4.12187	0.0411442	0.0354689	0.161534	0.137535
chr6	159722312	159722411	3254167	0	-	0.434343	(0.408,0.44]	chr6	302468	19	INTRON	INTRON	SOD2	ENSG00000112096.19	ENST00000546087.5:ENST00000545162.5:ENST00000535561.5:ENST00000537657.5:ENST00000401980.3	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	3.83494	3.9784050000000004	4.12187	0.0411442	0.0354689	0.161534	0.137535
chr6	163562069	163562169	3033188	0	+	0.41	(0.408,0.44]	chr6	282597	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	QKI	ENSG00000112531.17	ENST00000361758.8:ENST00000453779.6:ENST00000275262.11:ENST00000392127.6:ENST00000361752.8:ENST00000361195.6:ENST00000424802.7:ENST00000545607.5:ENST00000537041.5:ENST00000544823.5:ENST00000537883.5:ENST00000540719.1:ENST00000544361.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	21	2	3.83494	3.9784050000000004	4.12187	0.0411442	0.0354689	0.161534	0.137535
chr7	99905691	99905790	3584929	0	-	0.414141	(0.408,0.44]	chr7	334020	17	INTRON	INTRON	TRIM4	ENSG00000146833.16	ENST00000447480.5:ENST00000349062.7:ENST00000355947.6:ENST00000354241.5	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	3.83494	3.9784050000000004	4.12187	0.0411442	0.0354689	0.161534	0.137535
chr7	102058439	102058539	3368779	0	+	0.43	(0.408,0.44]	chr7	315239	299	INTRON	INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000497815.5:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000558469.5:ENST00000560541.5:ENST00000558836.5:ENST00000606749.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	21	2	3.83494	3.9784050000000004	4.12187	0.0411442	0.0354689	0.161534	0.137535
chr7	112330554	112330635	3381355	0	+	0.419753	(0.408,0.44]	chr7	316703	2	SS5_PROX	SS5_PROX:INTRON	ZNF277	ENSG00000198839.10	ENST00000361822.8:ENST00000361946.8:ENST00000457808.5:ENST00000425229.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	21	2	3.83494	3.9784050000000004	4.12187	0.0411442	0.0354689	0.161534	0.137535
chr8	22419151	22419251	3713162	0	+	0.44	(0.408,0.44]	chr8	344859	2	SS3_PROX	SS3_PROX:INTRON	SLC39A14	ENSG00000104635.15	ENST00000359741.10:ENST00000381237.6:ENST00000240095.10:ENST00000289952.9	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	3.83494	3.9784050000000004	4.12187	0.0411442	0.0354689	0.161534	0.137535
chr8	129327358	129327458	4058532	0	-	0.41	(0.408,0.44]	chr8	369539	237	INTRON	INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000657400.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1	lncRNA	lncRNA	lncRNA	lncRNA	0	21	2	3.83494	3.9784050000000004	4.12187	0.0411442	0.0354689	0.161534	0.137535
chr8	140606587	140606687	4076276	0	-	0.43	(0.408,0.44]	chr8	370285	8	INTRON	INTRON	AGO2	ENSG00000123908.12	ENST00000220592.10:ENST00000519980.5:ENST00000523609.5:ENST00000517293.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	21	2	3.83494	3.9784050000000004	4.12187	0.0411442	0.0354689	0.161534	0.137535
chrX	16812375	16812475	7626538	0	+	0.42	(0.408,0.44]	chrX	780926	254	INTRON	INTRON	TXLNG	ENSG00000086712.13	ENST00000398155.4:ENST00000380122.10	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	3.83494	3.9784050000000004	4.12187	0.0411442	0.0354689	0.161534	0.137535
chr2	197888692	197888792	969943	0	+	0.25	[0,0.28]	chr2	104858	780	INTRON	INTRON	PLCL1	ENSG00000115896.16	ENST00000428675.6:ENST00000435320.1:ENST00000487695.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	81	2	2.27384	3.9780949999999997	5.68235	0.0233847	4.43841e-4	0.11839	0.0190552
chr3	177138438	177138537	1871855	0	-	0.545455	(0.515,0.57]	chr3	187422	23	INTRON	INTRON	TBL1XR1	ENSG00000177565.18	ENST00000457928.7:ENST00000430069.5:ENST00000673974.1:ENST00000352800.10:ENST00000422442.6:ENST00000428970.5:ENST00000424913.5:ENST00000437738.5:ENST00000431421.5:ENST00000635794.1:ENST00000630796.2:ENST00000450267.5:ENST00000630833.2:ENST00000431674.5:ENST00000422066.5:ENST00000443315.5:ENST00000627825.2:ENST00000427349.5:ENST00000413084.5:ENST00000637137.1:ENST00000491623.2:ENST00000637544.1:ENST00000636187.1:ENST00000636912.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	42	2	2.76354	3.97781	5.19208	0.0147344	3.4344e-4	0.0983813	0.0164987
chr17	51119054	51119153	6797000	0	-	0.313131	(0.28,0.32]	chr17	671024	390	INTRON	INTRON	SPAG9	ENSG00000008294.22	ENST00000262013.12:ENST00000505279.5:ENST00000357122.8	protein_coding	protein_coding	protein_coding	protein_coding	1	50	2	3.02632	3.977805	4.92929	0.0098607	0.0071944	0.0838128	0.0756118
chr7	102846612	102846711	3590084	0	-	0.313131	(0.28,0.32]	chr7	335153	133	INTRON	INTRON	FBXL13	ENSG00000161040.18	ENST00000694871.1:ENST00000694870.1:ENST00000448002.6:ENST00000379305.7:ENST00000440067.3:ENST00000456695.6:ENST00000313221.8:ENST00000436908.5:ENST00000455112.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	50	2	3.02632	3.977805	4.92929	0.0098607	0.0071944	0.0838128	0.0756118
chr7	138467200	138467300	3434710	0	+	0.3	(0.28,0.32]	chr7	319959	55	INTRON	INTRON	TRIM24	ENSG00000122779.18	ENST00000343526.9:ENST00000415680.6:ENST00000497516.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	50	2	3.02632	3.977805	4.92929	0.0098607	0.0071944	0.0838128	0.0756118
chr17	59896119	59896218	6643792	0	+	0.292929	(0.28,0.32]	chr17	648798	18	INTRON	INTRON	RPS6KB1	ENSG00000108443.14	ENST00000393021.7:ENST00000472940.5:ENST00000225577.9:ENST00000477179.5:ENST00000443572.6:ENST00000489824.1:ENST00000406116.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	51	2	3.22074	3.9777400000000003	4.73474	0.0162835	0.00362783	0.101453	0.055479
chr22	47709713	47709810	7540144	0	+	0.298969	(0.28,0.32]	chr22	770713	23	INTRON	INTRON	ENSG00000224271	ENSG00000224271.7	ENST00000664761.1:ENST00000651071.1:ENST00000650683.1:ENST00000651536.1:ENST00000652499.1:ENST00000652656.1:ENST00000652072.1:ENST00000651445.1:ENST00000423737.5:ENST00000650660.1:ENST00000651056.1:ENST00000652611.1:ENST00000652399.1:ENST00000652123.1:ENST00000651311.1:ENST00000651458.1:ENST00000652505.1:ENST00000652702.2:ENST00000652334.1:ENST00000652030.2:ENST00000651403.1:ENST00000652228.1:ENST00000651124.1:ENST00000650972.1:ENST00000651985.1:ENST00000651637.1:ENST00000650924.1:ENST00000651003.1:ENST00000652168.1:ENST00000651948.2:ENST00000651293.1:ENST00000651939.1:ENST00000650787.1:ENST00000651517.1:ENST00000651662.1:ENST00000652690.1:ENST00000651638.1:ENST00000670853.1:ENST00000652750.1:ENST00000652080.1:ENST00000651294.1:ENST00000652164.1:ENST00000651538.1:ENST00000650775.1:ENST00000651983.1:ENST00000651033.1:ENST00000651584.1:ENST00000650884.1:ENST00000651270.1	lncRNA	lncRNA	lncRNA	lncRNA	1	50	2	2.80157	3.977575	5.15358	0.0147132	0.0052282	0.106558	0.0633615
chr2	241298149	241298249	1348394	0	-	0.52	(0.515,0.57]	chr2	141648	252	INTRON	INTRON	HDLBP	ENSG00000115677.18	ENST00000310931.10:ENST00000391976.6:ENST00000428482.5:ENST00000430918.5:ENST00000441124.5:ENST00000413241.5:ENST00000423693.5:ENST00000425989.5:ENST00000420451.5:ENST00000417540.5:ENST00000462130.1:ENST00000496569.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	42	2	3.03037	3.97755	4.92473	0.00608732	0.00108255	0.0676501	0.0300133
chr19	58298318	58298418	7107222	0	+	0.58	(0.57,1]	chr19	713389	29	UTR3	UTR3:EXON_MRNA:INTRON	ZNF8:ZNF8-ERVK3-1	ENSG00000278129.2:ENSG00000267216.1	ENST00000621650.2:ENST00000591325.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	2	54	2	3.88806	3.97753	4.067	6.56297e-5	2.30559e-5	0.0067007	0.00391568
chr6	147239370	147239470	2989059	0	+	0.3	(0.28,0.32]	chr6	280012	1	SS5_PROX	SS5_PROX:INTRON	STXBP5	ENSG00000164506.15	ENST00000321680.11:ENST00000367481.7:ENST00000546097.5:ENST00000367480.7	protein_coding	protein_coding	protein_coding	protein_coding	4	93	2	2.17818	3.9773199999999997	5.77646	0.00555379	6.44045e-4	0.0675078	0.0231685
chr11	670052	670152	4889224	0	-	0.48	(0.476,0.515]	chr11	457709	99	INTRON	INTRON	DEAF1	ENSG00000177030.19	ENST00000382409.4:ENST00000527170.5:ENST00000685854.1:ENST00000683307.1:ENST00000528864.6:ENST00000525626.6:ENST00000682936.1:ENST00000690068.1:ENST00000692634.1:ENST00000687329.1:ENST00000686001.1:ENST00000689835.1:ENST00000525904.5:ENST00000530813.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	80	2	2.07116	3.977265	5.88337	0.00731321	7.59355e-5	0.076234	0.00777694
chr17	21027942	21028041	6743017	0	-	0.363636	(0.35,0.378]	chr17	662061	64	INTRON	INTRON	USP22	ENSG00000124422.12	ENST00000261497.9:ENST00000537526.6:ENST00000455117.6:ENST00000579645.5:ENST00000476111.5:ENST00000584538.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	46	2	3.16371	3.97725	4.79079	0.00846427	0.00383956	0.0776969	0.0562562
chr5	176974502	176974600	2776613	0	-	0.377551	(0.35,0.378]	chr5	261567	33	INTRON	INTRON	UIMC1	ENSG00000087206.17	ENST00000377227.8:ENST00000511320.6:ENST00000506128.5:ENST00000512031.5:ENST00000509236.5:ENST00000417486.6:ENST00000515488.1:ENST00000507513.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	46	2	3.16371	3.97725	4.79079	0.00846427	0.00383956	0.0776969	0.0562562
chr4	73207992	73208092	2160318	0	-	0.54	(0.515,0.57]	chr4	212794	301	INTRON	INTRON	ANKRD17	ENSG00000132466.20	ENST00000358602.9:ENST00000558247.5:ENST00000330838.10:ENST00000509867.6:ENST00000561029.1:ENST00000559367.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	40	2	3.19178	3.9771099999999997	4.76244	0.00362147	0.00289534	0.0533855	0.0494641
chr1	155292237	155292337	560474	0	-	0.31	(0.28,0.32]	chr1	66898	3	SS3_PROX	SS3_PROX:INTRON	PKLR	ENSG00000143627.19	ENST00000342741.6:ENST00000392414.7	protein_coding	protein_coding	protein_coding	protein_coding	1	51	2	2.60656	3.977105	5.34765	0.0256827	0.00287138	0.133676	0.0474836
chr7	32504381	32504481	3303322	0	+	0.29	(0.28,0.32]	chr7	306758	82	INTRON	INTRON	AVL9	ENSG00000105778.20	ENST00000485228.1:ENST00000318709.9:ENST00000459629.1:ENST00000409301.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	51	2	2.60656	3.977105	5.34765	0.0256827	0.00287138	0.133676	0.0474836
chr1	53796488	53796588	460181	0	-	0.31	(0.28,0.32]	chr1	55383	4	SS5_PROX	SS5_PROX:INTRON	NDC1	ENSG00000058804.12	ENST00000371429.4	protein_coding	protein_coding	protein_coding	protein_coding	3	162	2	3.45912	3.9769300000000003	4.49474	2.41624e-4	8.51117e-6	0.0143056	0.00210871
chr5	113594429	113594524	2454695	0	+	0.305263	(0.28,0.32]	chr5	235285	11	UTR3	UTR3:EXON_MRNA	YTHDC2	ENSG00000047188.16	ENST00000161863.9:ENST00000512600.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	59	2	3.2685	3.9768850000000002	4.68527	0.00819419	0.00432734	0.0810802	0.0579331
chr2	75956164	75956264	817721	0	+	0.36	(0.35,0.378]	chr2	91391	833	INTRON	INTRON	ENSG00000287474	ENSG00000287474.1	ENST00000670606.1	lncRNA	lncRNA	lncRNA	lncRNA	1	46	2	2.79643	3.97683	5.15723	0.013543	0.00272706	0.101363	0.0467523
chr1	11196960	11197060	377851	0	-	0.4	(0.378,0.408]	chr1	44235	291	INTRON	INTRON	MTOR	ENSG00000198793.13	ENST00000361445.9	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	3.96471	3.97669	3.98867	0.0507	0.032421	0.156383	0.145026
chr1	42333924	42334024	432426	0	-	0.38	(0.378,0.408]	chr1	52343	97	INTRON	INTRON	FOXJ3	ENSG00000198815.9	ENST00000372573.5:ENST00000372572.5:ENST00000361776.5:ENST00000361346.6:ENST00000445886.5	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	3.96471	3.97669	3.98867	0.0507	0.032421	0.156383	0.145026
chr1	222714079	222714173	319914	0	+	0.393617	(0.378,0.408]	chr1	36765	2	INTRON	INTRON	BROX	ENSG00000162819.12	ENST00000612948.4:ENST00000340934.10:ENST00000537020.5:ENST00000539697.5:ENST00000426638.1:ENST00000473962.5:ENST00000469236.5:ENST00000489191.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	21	2	3.96471	3.97669	3.98867	0.0507	0.032421	0.156383	0.145026
chr10	100279823	100279923	4679073	0	-	0.39	(0.378,0.408]	chr10	431735	3	SS5_PROX	SS5_PROX:INTRON	BLOC1S2	ENSG00000196072.12	ENST00000614731.4:ENST00000618916.4:ENST00000370372.7:ENST00000441611.5	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	3.96471	3.97669	3.98867	0.0507	0.032421	0.156383	0.145026
chr11	119133801	119133898	4874844	0	+	0.381443	(0.378,0.408]	chr11	455655	7	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	HINFP	ENSG00000172273.13	ENST00000350777.7:ENST00000527410.3:ENST00000527755.5:ENST00000529808.1:ENST00000532860.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	21	2	3.96471	3.97669	3.98867	0.0507	0.032421	0.156383	0.145026
chr12	12448468	12448567	5079990	0	+	0.40404	(0.378,0.408]	chr12	480124	123	INTRON	INTRON	BORCS5	ENSG00000165714.11	ENST00000314565.9:ENST00000542728.5:ENST00000298571.6	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	3.96471	3.97669	3.98867	0.0507	0.032421	0.156383	0.145026
chr12	49747725	49747824	5134991	0	+	0.40404	(0.378,0.408]	chr12	484123	28	INTRON	INTRON	TMBIM6	ENSG00000139644.13	ENST00000548809.5:ENST00000551154.5:ENST00000546796.5:ENST00000549966.5:ENST00000547832.5:ENST00000547187.5:ENST00000267115.10:ENST00000552699.5:ENST00000552635.5:ENST00000546914.5:ENST00000548894.5:ENST00000549445.5:ENST00000550951.5:ENST00000549385.5:ENST00000548201.5:ENST00000548713.5:ENST00000423828.5:ENST00000550445.5:ENST00000549130.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	21	2	3.96471	3.97669	3.98867	0.0507	0.032421	0.156383	0.145026
chr13	20070842	20070942	5453581	0	+	0.4	(0.378,0.408]	chr13	522569	26	INTRON	INTRON	ZMYM2	ENSG00000121741.17	ENST00000382874.6:ENST00000610343.5:ENST00000382871.3:ENST00000382883.7:ENST00000382870.7:ENST00000494061.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	21	2	3.96471	3.97669	3.98867	0.0507	0.032421	0.156383	0.145026
chr13	51963098	51963196	5596421	0	-	0.408163	(0.378,0.408]	chr13	534946	8	INTRON	INTRON	ATP7B	ENSG00000123191.16	ENST00000242839.10:ENST00000344297.9:ENST00000674147.1:ENST00000448424.7:ENST00000634620.1:ENST00000634296.1:ENST00000400370.8:ENST00000634844.1:ENST00000673772.1:ENST00000634308.1:ENST00000418097.7:ENST00000400366.6:ENST00000635406.1:ENST00000482841.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	21	2	3.96471	3.97669	3.98867	0.0507	0.032421	0.156383	0.145026
chr13	110630545	110630645	5543827	0	+	0.4	(0.378,0.408]	chr13	529660	26	INTRON	INTRON	NAXD	ENSG00000213995.12	ENST00000680254.1:ENST00000424185.7:ENST00000679389.1:ENST00000679968.1:ENST00000470164.2:ENST00000680505.1:ENST00000309957.3:ENST00000680312.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	21	2	3.96471	3.97669	3.98867	0.0507	0.032421	0.156383	0.145026
chr15	25349800	25349900	6120921	0	-	0.4	(0.378,0.408]	chr15	582841	39	INTRON	INTRON	UBE3A	ENSG00000114062.22	ENST00000648336.2:ENST00000438097.6:ENST00000635914.1:ENST00000638155.1:ENST00000637886.1:ENST00000638011.1:ENST00000649550.1:ENST00000650110.1:ENST00000630424.2:ENST00000566215.5:ENST00000428984.6:ENST00000626176.2:ENST00000604860.3:ENST00000675177.1:ENST00000675593.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	21	2	3.96471	3.97669	3.98867	0.0507	0.032421	0.156383	0.145026
chr18	62946568	62946667	6924894	0	+	0.383838	(0.378,0.408]	chr18	685258	9	INTRON	INTRON	PHLPP1	ENSG00000081913.14	ENST00000262719.10:ENST00000591386.1	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	3.96471	3.97669	3.98867	0.0507	0.032421	0.156383	0.145026
chr19	23753522	23753622	7164116	0	-	0.39	(0.378,0.408]	chr19	724060	78	INTRON	INTRON	ZNF681	ENSG00000196172.9	ENST00000402377.3:ENST00000528059.1:ENST00000531570.1	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	3.96471	3.97669	3.98867	0.0507	0.032421	0.156383	0.145026
chr2	58169885	58169983	1126021	0	-	0.387755	(0.378,0.408]	chr2	120898	7	EXON_MRNA	EXON_MRNA:INTRON	FANCL	ENSG00000115392.13	ENST00000696400.1:ENST00000403295.8:ENST00000696492.1:ENST00000427708.7:ENST00000696314.1:ENST00000696315.1:ENST00000696454.1:ENST00000696508.1:ENST00000696548.1:ENST00000696542.1:ENST00000696432.1:ENST00000696319.1:ENST00000403676.6:ENST00000696433.1:ENST00000696434.1:ENST00000696499.1:ENST00000696564.1:ENST00000402135.8:ENST00000696546.1:ENST00000233741.9:ENST00000696316.1:ENST00000696378.1:ENST00000696435.1:ENST00000696493.1:ENST00000696543.1:ENST00000696544.1:ENST00000696545.1:ENST00000696565.1:ENST00000696620.1:ENST00000696621.1:ENST00000696635.1:ENST00000696364.1:ENST00000696634.1:ENST00000696619.1:ENST00000696317.1:ENST00000696622.1:ENST00000696467.1:ENST00000696547.1:ENST00000449070.6:ENST00000696305.1:ENST00000417361.2:ENST00000696338.1:ENST00000696361.1:ENST00000696318.1:ENST00000696371.1:ENST00000696409.1:ENST00000696410.1:ENST00000696455.1:ENST00000696468.1:ENST00000696527.1:ENST00000696567.1:ENST00000696324.1:ENST00000696566.1:ENST00000696623.1:ENST00000446381.6:ENST00000696469.1:ENST00000696624.1:ENST00000696411.1:ENST00000696475.1:ENST00000470506.2:ENST00000696358.1:ENST00000696373.1:ENST00000696394.1:ENST00000696320.1:ENST00000696339.1:ENST00000696395.1:ENST00000696341.1:ENST00000696340.1:ENST00000696374.1:ENST00000696396.1:ENST00000696412.1:ENST00000696375.1:ENST00000696342.1:ENST00000696325.1:ENST00000696399.1:ENST00000696398.1:ENST00000696306.1:ENST00000696397.1:ENST00000696360.1:ENST00000696344.1:ENST00000696343.1:ENST00000696637.1:ENST00000696362.1:ENST00000696528.1:ENST00000696497.1:ENST00000696326.1:ENST00000696638.1:ENST00000696625.1:ENST00000696376.1:ENST00000696510.1:ENST00000696438.1:ENST00000696496.1:ENST00000696509.1:ENST00000696569.1:ENST00000696457.1:ENST00000696458.1:ENST00000696473.1:ENST00000696495.1:ENST00000696415.1:ENST00000696472.1:ENST00000696494.1:ENST00000696363.1:ENST00000696414.1:ENST00000696529.1:ENST00000696471.1:ENST00000696459.1:ENST00000696498.1:ENST00000696532.1:ENST00000696416.1:ENST00000696530.1:ENST00000696460.1:ENST00000696570.1:ENST00000696531.1:ENST00000696307.1:ENST00000696401.1:ENST00000696345.1:ENST00000696377.1:ENST00000696417.1:ENST00000696594.1:ENST00000696595.1:ENST00000696379.1:ENST00000696346.1:ENST00000696380.1:ENST00000696347.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	21	2	3.96471	3.97669	3.98867	0.0507	0.032421	0.156383	0.145026
chr2	135537816	135537916	874016	0	+	0.38	(0.378,0.408]	chr2	97879	58	INTRON	INTRON	R3HDM1	ENSG00000048991.17	ENST00000483021.5:ENST00000463230.5:ENST00000683871.1:ENST00000409478.5:ENST00000264160.8:ENST00000438014.5:ENST00000488035.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	21	2	3.96471	3.97669	3.98867	0.0507	0.032421	0.156383	0.145026
chr2	156223379	156223479	1248664	0	-	0.39	(0.378,0.408]	chr2	132421	176	INTRON	INTRON	LINC01876	ENSG00000226383.7	ENST00000635799.1:ENST00000662073.1:ENST00000659502.1:ENST00000428651.2:ENST00000661513.1:ENST00000657334.1:ENST00000638047.1:ENST00000637554.1:ENST00000636956.1:ENST00000637665.1:ENST00000637476.1:ENST00000637324.1	lncRNA	lncRNA	lncRNA	lncRNA	0	21	2	3.96471	3.97669	3.98867	0.0507	0.032421	0.156383	0.145026
chr2	203329629	203329729	989586	0	+	0.38	(0.378,0.408]	chr2	106276	6	INTRON	INTRON	ABI2	ENSG00000138443.17	ENST00000261017.9:ENST00000447762.5:ENST00000416001.5:ENST00000430418.5:ENST00000295851.10:ENST00000261018.12:ENST00000425253.1:ENST00000424558.5:ENST00000413635.5:ENST00000431886.5:ENST00000444584.1:ENST00000417864.5:ENST00000494215.1:ENST00000376135.5:ENST00000422511.6:ENST00000261016.11	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	21	2	3.96471	3.97669	3.98867	0.0507	0.032421	0.156383	0.145026
chr20	37022057	37022149	7338809	0	-	0.391304	(0.378,0.408]	chr20	747838	10	INTRON	INTRON	RBL1	ENSG00000080839.12	ENST00000373664.8:ENST00000344359.7	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	3.96471	3.97669	3.98867	0.0507	0.032421	0.156383	0.145026
chr22	46943817	46943917	7537012	0	+	0.4	(0.378,0.408]	chr22	770616	300	INTRON	INTRON	TBC1D22A	ENSG00000054611.14	ENST00000380995.5:ENST00000337137.9:ENST00000407381.7:ENST00000355704.7:ENST00000394449.6:ENST00000441162.5:ENST00000406733.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	21	2	3.96471	3.97669	3.98867	0.0507	0.032421	0.156383	0.145026
chr3	46950833	46950932	1679771	0	-	0.393939	(0.378,0.408]	chr3	171431	94	INTRON	INTRON	CCDC12	ENSG00000160799.12	ENST00000425441.5:ENST00000683445.1:ENST00000292314.6:ENST00000605358.5:ENST00000488069.5:ENST00000603885.5:ENST00000446836.5:ENST00000494655.5:ENST00000604164.5:ENST00000604181.1:ENST00000605875.1:ENST00000460035.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	21	2	3.96471	3.97669	3.98867	0.0507	0.032421	0.156383	0.145026
chr3	72980512	72980612	1451786	0	+	0.38	(0.378,0.408]	chr3	152936	37	INTRON	INTRON	GXYLT2	ENSG00000172986.13	ENST00000491839.1	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	3.96471	3.97669	3.98867	0.0507	0.032421	0.156383	0.145026
chr4	77921848	77921948	1980465	0	+	0.39	(0.378,0.408]	chr4	198363	121	INTRON	INTRON	MRPL1	ENSG00000169288.18	ENST00000315567.13:ENST00000502384.3:ENST00000504901.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	21	2	3.96471	3.97669	3.98867	0.0507	0.032421	0.156383	0.145026
chr5	180522376	180522476	2562143	0	+	0.38	(0.378,0.408]	chr5	245082	264	INTRON	INTRON	CNOT6	ENSG00000113300.13	ENST00000261951.9:ENST00000393356.7:ENST00000507016.1:ENST00000618123.4:ENST00000502447.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	21	2	3.96471	3.97669	3.98867	0.0507	0.032421	0.156383	0.145026
chr6	21070225	21070324	2833751	0	+	0.393939	(0.378,0.408]	chr6	265697	46	INTRON	INTRON	CDKAL1	ENSG00000145996.11	ENST00000274695.8:ENST00000378610.1	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	3.96471	3.97669	3.98867	0.0507	0.032421	0.156383	0.145026
chr6	158019889	158019989	3017394	0	+	0.38	(0.378,0.408]	chr6	281478	17	INTRON	INTRON	SYNJ2	ENSG00000078269.15	ENST00000355585.9:ENST00000640338.1:ENST00000367113.5:ENST00000638626.1:ENST00000449320.2	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	3.96471	3.97669	3.98867	0.0507	0.032421	0.156383	0.145026
chr6	170683409	170683509	3038287	0	+	0.4	(0.378,0.408]	chr6	283181	448	INTRON	INTRON	ENSG00000230423	ENSG00000230423.3	ENST00000656791.1:ENST00000426839.2	lncRNA	lncRNA	lncRNA	lncRNA	0	21	2	3.96471	3.97669	3.98867	0.0507	0.032421	0.156383	0.145026
chr7	24834086	24834158	3504345	0	-	0.402778	(0.378,0.408]	chr7	327030	1	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	OSBPL3	ENSG00000070882.13	ENST00000313367.7:ENST00000409863.5:ENST00000396431.5:ENST00000409452.5:ENST00000409759.5:ENST00000409555.5:ENST00000396429.5:ENST00000409069.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	21	2	3.96471	3.97669	3.98867	0.0507	0.032421	0.156383	0.145026
chr8	28865404	28865504	3928935	0	-	0.39	(0.378,0.408]	chr8	359811	28	INTRON	INTRON	INTS9	ENSG00000104299.15	ENST00000416984.6:ENST00000521022.6:ENST00000523303.5:ENST00000521777.5:ENST00000522363.5:ENST00000520983.5:ENST00000523436.5:ENST00000518510.5:ENST00000520184.1:ENST00000520831.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	21	2	3.96471	3.97669	3.98867	0.0507	0.032421	0.156383	0.145026
chr8	41795133	41795232	3939037	0	-	0.40404	(0.378,0.408]	chr8	361127	55	INTRON	INTRON	ANK1	ENSG00000029534.21	ENST00000347528.8:ENST00000265709.13:ENST00000289734.13:ENST00000521407.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	21	2	3.96471	3.97669	3.98867	0.0507	0.032421	0.156383	0.145026
chr8	144306017	144306116	3881669	0	+	0.40404	(0.378,0.408]	chr8	356871	121	INTRON	INTRON	HSF1	ENSG00000185122.11	ENST00000400780.8:ENST00000528838.6:ENST00000528988.1:ENST00000533240.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	21	2	3.96471	3.97669	3.98867	0.0507	0.032421	0.156383	0.145026
chrX	24150740	24150819	7631005	0	+	0.392405	(0.378,0.408]	chrX	781509	4	EXON_LNCRNA	EXON_LNCRNA:INTRON	ZFX	ENSG00000005889.16	ENST00000497813.1:ENST00000428571.5:ENST00000539115.5:ENST00000379188.7:ENST00000304543.10:ENST00000419690.5:ENST00000379177.5:ENST00000459724.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	21	2	3.96471	3.97669	3.98867	0.0507	0.032421	0.156383	0.145026
chr7	100096733	100096800	3585320	0	-	0.402985	(0.378,0.408]	chr7	334119	2	INTRON	INTRON	MCM7	ENSG00000166508.18	ENST00000303887.10:ENST00000489841.5:ENST00000621318.4:ENST00000354230.7:ENST00000343023.10:ENST00000485286.5:ENST00000491245.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	95	2	2.42026	3.976625	5.53299	0.00213386	1.47095e-4	0.041773	0.0105341
chr6	147205082	147205182	2988714	0	+	0.37	(0.35,0.378]	chr6	279994	4	SS5_PROX	SS5_PROX:INTRON	STXBP5	ENSG00000164506.15	ENST00000321680.11:ENST00000367481.7:ENST00000546097.5:ENST00000367480.7	protein_coding	protein_coding	protein_coding	protein_coding	2	104	2	3.92218	3.97654	4.0309	2.32637e-4	7.36864e-5	0.013966	0.00714826
chr3	153165639	153165738	1537075	0	+	0.393939	(0.378,0.408]	chr3	160077	25	UTR3	UTR3:EXON_MRNA	RAP2B	ENSG00000181467.5	ENST00000323534.5	protein_coding	protein_coding	protein_coding	protein_coding	1	48	2	2.66785	3.9765300000000003	5.28521	0.0224639	4.52877e-4	0.11692	0.0192381
chr1	246630696	246630795	350630	0	+	0.363636	(0.35,0.378]	chr1	40508	87	INTRON	INTRON	CNST	ENSG00000162852.14	ENST00000483271.1:ENST00000366513.9:ENST00000366512.7:ENST00000366511.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	51	2	3.12905	3.9764099999999996	4.82377	0.00566312	0.00325499	0.0653997	0.0524329
chr7	130190929	130191029	3638607	0	-	0.4	(0.378,0.408]	chr7	338389	52	INTRON	INTRON	TMEM209	ENSG00000146842.17	ENST00000397622.7:ENST00000473456.5:ENST00000462753.5	protein_coding	protein_coding	protein_coding	protein_coding	3	132	2	3.7532	3.9763	4.1994	5.19961e-5	1.39544e-5	0.00627105	0.00278668
chr5	66145583	66145683	2372500	0	+	0.25	[0,0.28]	chr5	228648	4	SS5_PROX	SS5_PROX:INTRON	SREK1	ENSG00000153914.16	ENST00000521691.5:ENST00000612404.4:ENST00000523851.1:ENST00000334121.11:ENST00000520058.1:ENST00000520953.5:ENST00000522912.5:ENST00000524111.5:ENST00000380918.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	73	2	2.28885	3.97629	5.66373	0.0181093	0.00196371	0.114853	0.0401678
chr2	96201546	96201646	1179922	0	-	0.43	(0.408,0.44]	chr2	126153	56	INTRON	INTRON	STARD7	ENSG00000084090.14	ENST00000337288.10:ENST00000443962.1:ENST00000488084.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	67	2	2.88913	3.97628	5.06343	0.00185044	0.00101725	0.0388609	0.0293497
chr15	58672260	58672360	6192733	0	-	0.39	(0.378,0.408]	chr15	589951	67	INTRON	INTRON	ADAM10	ENSG00000137845.15	ENST00000260408.8:ENST00000402627.5:ENST00000561288.1:ENST00000396136.6:ENST00000559053.1:ENST00000558733.5:ENST00000439637.5:ENST00000497846.5:ENST00000558004.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	48	2	2.90162	3.9762649999999997	5.05091	0.0113157	0.00118558	0.0886121	0.031662
chrX	74600994	74601094	7841812	0	-	0.39	(0.378,0.408]	chrX	799787	46	INTRON	INTRON	RLIM	ENSG00000131263.13	ENST00000332687.11:ENST00000349225.2	protein_coding	protein_coding	protein_coding	protein_coding	1	48	2	2.90162	3.9762649999999997	5.05091	0.0113157	0.00118558	0.0886121	0.031662
chr8	129490397	129490493	4060182	0	-	0.447917	(0.44,0.476]	chr8	369624	3	INTRON	INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1:ENST00000676273.1:ENST00000667643.1:ENST00000668791.1:ENST00000663716.1:ENST00000663572.1:ENST00000676148.1:ENST00000667962.1:ENST00000674877.1:ENST00000675316.1:ENST00000674656.1:ENST00000446592.7:ENST00000667341.1:ENST00000675186.1:ENST00000652971.1:ENST00000661447.1:ENST00000674863.1:ENST00000675498.1:ENST00000675527.1:ENST00000676108.1:ENST00000657647.1:ENST00000675589.1:ENST00000675913.1:ENST00000675109.1:ENST00000671632.1:ENST00000671311.1:ENST00000676099.1:ENST00000660652.1:ENST00000675522.1:ENST00000675183.1:ENST00000658861.1:ENST00000663991.1:ENST00000675044.1:ENST00000675435.1:ENST00000674639.1:ENST00000676069.1:ENST00000675532.1:ENST00000674762.1:ENST00000523151.6:ENST00000675948.1:ENST00000665364.1:ENST00000657251.1:ENST00000675166.1:ENST00000674883.1:ENST00000675867.1:ENST00000674580.1:ENST00000675393.1:ENST00000520048.1:ENST00000674906.1:ENST00000676030.1:ENST00000670588.1:ENST00000675072.1:ENST00000664936.1:ENST00000652914.1:ENST00000657069.1	lncRNA	lncRNA	lncRNA	lncRNA	4	90	2	2.36262	3.976255	5.58989	0.00255041	9.76499e-5	0.0449067	0.00830626
chr19	47137482	47137581	7083935	0	+	0.434343	(0.408,0.44]	chr19	708741	15	INTRON	INTRON	SAE1	ENSG00000142230.13	ENST00000594144.5:ENST00000594526.5:ENST00000597808.5:ENST00000413379.7:ENST00000600706.5:ENST00000270225.12:ENST00000598840.5:ENST00000414294.6:ENST00000600753.1:ENST00000660039.1:ENST00000664120.1:ENST00000596995.1:ENST00000392776.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	47	2	2.6542	3.975995	5.29779	0.0227514	3.80479e-4	0.117618	0.0176313
chr13	42294396	42294496	5477480	0	+	0.46	(0.44,0.476]	chr13	524816	15	INTRON	INTRON	AKAP11	ENSG00000023516.9	ENST00000025301.4	protein_coding	protein_coding	protein_coding	protein_coding	2	64	2	2.7096	3.975855	5.24211	0.00376205	4.87398e-4	0.0539118	0.0199652
chr2	235508137	235508237	1041476	0	+	0.42	(0.408,0.44]	chr2	111217	129	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	49	2	2.36073	3.97559	5.59045	0.0481658	9.6776e-5	0.153019	0.00826486
chr11	33773760	33773858	4941688	0	-	0.44898	(0.44,0.476]	chr11	463023	31	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	FBXO3	ENSG00000110429.14	ENST00000526785.5:ENST00000265651.8:ENST00000530013.5:ENST00000530401.5:ENST00000534136.5:ENST00000448981.6:ENST00000532927.5:ENST00000529137.1:ENST00000533103.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	59	2	2.86452	3.975555	5.08659	0.00226401	0.00159222	0.0425438	0.0367961
chr11	78392172	78392272	5000131	0	-	0.44	(0.408,0.44]	chr11	472472	277	INTRON	INTRON	GAB2	ENSG00000033327.13	ENST00000361507.5:ENST00000526030.1:ENST00000528886.5:ENST00000530915.1:ENST00000534823.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	97	2	3.62972	3.9753249999999998	4.32093	7.19047e-4	1.15245e-5	0.0246202	0.00250519
chr1	176025071	176025171	589875	0	-	0.26	[0,0.28]	chr1	70886	352	INTRON	INTRON	COP1	ENSG00000143207.21	ENST00000367669.8:ENST00000367667.5:ENST00000461830.6:ENST00000367666.5:ENST00000649803.1:ENST00000308769.12	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	54	2	3.00498	3.975295	4.94561	0.0150263	0.00876063	0.0994339	0.0846118
chr17	46334837	46334901	6785816	0	-	0.234375	[0,0.28]	chr17	669304	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	ARL17B	ENSG00000228696.10	ENST00000570618.5:ENST00000656849.1:ENST00000434041.6:ENST00000572991.5:ENST00000622877.4:ENST00000575698.5:ENST00000575960.5:ENST00000571246.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	54	2	3.00498	3.975295	4.94561	0.0150263	0.00876063	0.0994339	0.0846118
chr18	1328778	1328878	6941467	0	-	0.29	(0.28,0.32]	chr18	686579	48	INTRON	INTRON	LINC00470	ENSG00000132204.14	ENST00000657423.1:ENST00000657618.1:ENST00000584090.5:ENST00000660947.1:ENST00000669242.1:ENST00000660475.1:ENST00000653775.1:ENST00000661931.1:ENST00000412816.7:ENST00000577867.5:ENST00000584492.5:ENST00000667416.1:ENST00000661852.1:ENST00000657919.1:ENST00000661646.1:ENST00000667776.1:ENST00000654559.1:ENST00000661233.1:ENST00000653213.1:ENST00000659094.1:ENST00000660964.1:ENST00000577403.6:ENST00000660358.1:ENST00000669153.1:ENST00000657121.1:ENST00000655957.1:ENST00000659289.1:ENST00000665133.1:ENST00000671558.1:ENST00000666542.1:ENST00000663512.1:ENST00000582862.6:ENST00000578835.5:ENST00000669312.1:ENST00000581430.5:ENST00000581212.1:ENST00000658090.1	lncRNA	lncRNA	lncRNA	lncRNA	2	75	2	2.50462	3.975225	5.44583	0.0102735	5.8721e-4	0.0850389	0.0220073
chr3	49966997	49967097	1423225	0	+	0.38	(0.378,0.408]	chr3	149964	4	SS3_PROX	SS3_PROX:INTRON	RBM6	ENSG00000004534.15	ENST00000442092.5:ENST00000443081.5:ENST00000419610.5:ENST00000441115.5:ENST00000422955.5:ENST00000454079.5:ENST00000266022.9:ENST00000425608.5:ENST00000434592.5:ENST00000433811.1:ENST00000491874.5:ENST00000488807.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	49	2	2.46373	3.975225	5.48672	0.0382831	1.83012e-4	0.141795	0.01176
chr7	22576557	22576657	3499136	0	-	0.4	(0.378,0.408]	chr7	326644	34	INTRON	INTRON	STEAP1B	ENSG00000105889.16	ENST00000439708.1:ENST00000442252.1:ENST00000650428.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	49	2	2.46373	3.975225	5.48672	0.0382831	1.83012e-4	0.141795	0.01176
chr9	34666559	34666656	4112323	0	+	0.391753	(0.378,0.408]	chr9	374828	4	INTRON	INTRON	ENSG00000230074	ENSG00000230074.4	ENST00000654838.1:ENST00000688682.1:ENST00000434627.1	lncRNA	lncRNA	lncRNA	lncRNA	1	49	2	2.46373	3.975225	5.48672	0.0382831	1.83012e-4	0.141795	0.01176
chr6	161096791	161096887	3025566	0	+	0.260417	[0,0.28]	chr6	282403	2	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	MAP3K4	ENSG00000085511.20	ENST00000366919.6:ENST00000392142.9:ENST00000366920.6:ENST00000348824.11:ENST00000544041.5:ENST00000490904.6:ENST00000543421.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	54	2	2.69187	3.97501	5.25815	0.0221271	0.0066548	0.123903	0.0703807
chr7	12374862	12374909	3485138	0	-	0.148936	[0,0.28]	chr7	325924	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	VWDE	ENSG00000146530.15	ENST00000275358.8:ENST00000452576.6:ENST00000521169.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	54	2	2.69187	3.97501	5.25815	0.0221271	0.0066548	0.123903	0.0703807
chr3	19973300	19973399	1376299	0	+	0.282828	(0.28,0.32]	chr3	145058	22	INTRON	INTRON	RAB5A	ENSG00000144566.11	ENST00000273047.9:ENST00000412966.5:ENST00000446547.5:ENST00000422242.1:ENST00000469122.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	85	2	2.69602	3.9749499999999998	5.25388	0.00385849	0.00126382	0.0542786	0.0329641
chr3	48166093	48166193	1687601	0	-	0.48	(0.476,0.515]	chr3	172307	2	SS3_PROX	SS3_PROX:INTRON	CDC25A	ENSG00000164045.12	ENST00000302506.8:ENST00000351231.7:ENST00000459900.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	49	2	3.33416	3.974675	4.61519	0.00528365	0.00230489	0.0656295	0.0428247
chr1	246883993	246884093	681460	0	-	0.33	(0.32,0.35]	chr1	79929	63	INTRON	INTRON	AHCTF1	ENSG00000153207.16	ENST00000648844.2:ENST00000326225.3:ENST00000366508.5:ENST00000470300.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	48	2	3.18392	3.9744650000000004	4.76501	0.0114287	0.00379806	0.0886611	0.0562562
chr4	86948671	86948771	1993932	0	+	0.35	(0.32,0.35]	chr4	199031	1	SS5_PROX	SS5_PROX:INTRON	AFF1	ENSG00000172493.23	ENST00000504956.5:ENST00000395146.9:ENST00000507468.5:ENST00000674009.1:ENST00000503477.5:ENST00000511996.5:ENST00000511442.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	48	2	3.18392	3.9744650000000004	4.76501	0.0114287	0.00379806	0.0886611	0.0562562
chr5	131715965	131716064	2719929	0	-	0.333333	(0.32,0.35]	chr5	255702	50	INTRON	INTRON	FNIP1	ENSG00000217128.13	ENST00000510461.6:ENST00000307954.12:ENST00000307968.11:ENST00000511848.1	protein_coding	protein_coding	protein_coding	protein_coding	1	48	2	3.18392	3.9744650000000004	4.76501	0.0114287	0.00379806	0.0886611	0.0562562
chr6	126003869	126003968	2956236	0	+	0.323232	(0.32,0.35]	chr6	278005	39	INTRON	INTRON	TRMT11	ENSG00000066651.20	ENST00000479748.5:ENST00000368332.7:ENST00000461129.5:ENST00000648977.1:ENST00000468097.5:ENST00000334379.11	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	48	2	3.18392	3.9744650000000004	4.76501	0.0114287	0.00379806	0.0886611	0.0562562
chr8	102287117	102287188	4011455	0	-	0.323944	(0.32,0.35]	chr8	367064	1	SS5_PROX	SS5_PROX:INTRON	UBR5	ENSG00000104517.13	ENST00000520539.6:ENST00000220959.8:ENST00000521922.5	protein_coding	protein_coding	protein_coding	protein_coding	2	66	2	2.92893	3.97405	5.01917	0.0055659	0.00138	0.0648867	0.0341261
chr21	10445439	10445538	7368449	0	+	0.292929	(0.28,0.32]	chr21	751975	302	INTRON	INTRON	BAGE2	ENSG00000187172.15	ENST00000474011.5:ENST00000470054.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	2	67	2	2.55521	3.9737800000000005	5.39235	0.0067419	0.0024844	0.0739405	0.0446195
chr19	55045908	55046007	7212121	0	-	0.484848	(0.476,0.515]	chr19	732229	2	INTRON	INTRON	RDH13	ENSG00000160439.16	ENST00000591960.1:ENST00000415061.8:ENST00000610356.4:ENST00000396247.7:ENST00000291892.10:ENST00000592573.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	46	2	2.82673	3.973725	5.12072	0.0134403	8.42139e-4	0.0946278	0.0263691
chr22	37773382	37773482	7511537	0	+	0.5	(0.476,0.515]	chr22	767094	2	SS3_PROX	SS3_PROX:INTRON	TRIOBP	ENSG00000100106.22	ENST00000644935.1:ENST00000344404.10:ENST00000403663.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	46	2	2.82673	3.973725	5.12072	0.0134403	8.42139e-4	0.0946278	0.0263691
chr9	130861366	130861466	4215340	0	+	0.32	(0.28,0.32]	chr9	386442	59	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000318560.6	protein_coding	protein_coding	protein_coding	protein_coding	2	67	2	2.42868	3.97368	5.51868	0.0105331	0.00162747	0.0908969	0.0367966
chr2	53963155	53963255	1120500	0	-	0.48	(0.476,0.515]	chr2	120102	135	INTRON	INTRON	PSME4	ENSG00000068878.15	ENST00000404125.6:ENST00000389993.7:ENST00000481518.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	90	2	2.24352	3.973665	5.70381	0.0019689	1.75496e-4	0.0411469	0.01216
chr19	656272	656372	7110189	0	-	0.42	(0.408,0.44]	chr19	713977	30	INTRON	INTRON	RNF126	ENSG00000070423.18	ENST00000292363.10:ENST00000605891.5:ENST00000590885.6:ENST00000589762.5:ENST00000591394.2:ENST00000592626.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	64	2	2.64944	3.9736149999999997	5.29779	0.00481947	3.80479e-4	0.060277	0.0176313
chr4	102869379	102869479	2007470	0	+	0.54	(0.515,0.57]	chr4	200241	1	CDS_START	CDS_START:CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	CISD2	ENSG00000145354.12	ENST00000646632.1:ENST00000273986.10:ENST00000574446.1:ENST00000643561.1:ENST00000503643.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	65	2	2.06206	3.9734849999999997	5.88491	0.0135396	2.75856e-5	0.101363	0.00430942
chr1	15890553	15890653	35093	0	+	0.39	(0.378,0.408]	chr1	4272	135	INTRON	INTRON	SPEN	ENSG00000065526.12	ENST00000673875.1:ENST00000375759.8:ENST00000438066.1:ENST00000442985.1	protein_coding	protein_coding	protein_coding	protein_coding	4	89	2	1.85455	3.9733549999999997	6.09216	0.0192049	7.66781e-6	0.108861	0.00197346
chr1	155917317	155917398	564676	0	-	0.358025	(0.35,0.378]	chr1	67450	2	SS5_PROX	SS5_PROX:INTRON	KHDC4	ENSG00000132680.11	ENST00000368321.8:ENST00000368320.7:ENST00000478002.5:ENST00000466520.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	81	2	1.87726	3.973225	6.06919	0.0297629	1.23263e-5	0.12908	0.00261354
chr19	3197546	3197642	6998963	0	+	0.427083	(0.408,0.44]	chr19	694100	9	INTRON	INTRON	NCLN	ENSG00000125912.11	ENST00000590671.5:ENST00000246117.9:ENST00000588428.5	protein_coding	protein_coding	protein_coding	protein_coding	2	96	2	3.81928	3.9731900000000002	4.1271	3.06208e-4	3.62655e-5	0.0161362	0.00482747
chr1	246894948	246895048	681581	0	-	0.32	(0.28,0.32]	chr1	79974	2	SS3_PROX	SS3_PROX:INTRON	AHCTF1	ENSG00000153207.16	ENST00000648844.2:ENST00000326225.3:ENST00000366508.5:ENST00000470300.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	69	2	2.13651	3.973155	5.8098	0.0265696	5.67703e-4	0.134088	0.0220072
chr15	82500587	82500686	6247255	0	-	0.292929	(0.28,0.32]	chr15	596152	223	INTRON	INTRON	GOLGA2P10	ENSG00000255769.7	ENST00000618004.4:ENST00000614347.4:ENST00000618267.4:ENST00000612379.4:ENST00000619738.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	1	55	2	2.45545	3.973025	5.4906	0.0438092	4.89126e-4	0.14901	0.0199693
chr3	43718149	43718245	1410458	0	+	0.3125	(0.28,0.32]	chr3	147962	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ABHD5	ENSG00000011198.10	ENST00000643520.1:ENST00000458276.7:ENST00000649763.1:ENST00000643140.1:ENST00000643500.1:ENST00000644371.2:ENST00000646378.1:ENST00000643477.1:ENST00000646799.1:ENST00000454293.2:ENST00000642351.1:ENST00000413300.2:ENST00000463153.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	55	2	2.45545	3.973025	5.4906	0.0438092	4.89126e-4	0.14901	0.0199693
chr11	9198444	9198543	4908396	0	-	0.484848	(0.476,0.515]	chr11	460086	44	INTRON	INTRON	DENND5A	ENSG00000184014.9	ENST00000328194.8:ENST00000681203.1:ENST00000530780.2:ENST00000679999.1:ENST00000680470.1:ENST00000680599.1:ENST00000680554.1:ENST00000679745.1:ENST00000680252.1:ENST00000681425.1:ENST00000681158.1:ENST00000679460.1:ENST00000679568.1:ENST00000679446.1:ENST00000680294.1:ENST00000680742.1:ENST00000680885.1:ENST00000680576.1:ENST00000530044.5:ENST00000526707.5:ENST00000681173.1:ENST00000530867.2:ENST00000681915.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	59	2	2.85177	3.973	5.09423	0.00204588	0.00169916	0.04086	0.0381936
chr14	100337602	100337702	5968499	0	-	0.5	(0.476,0.515]	chr14	567054	4	SS3_PROX	SS3_PROX:INTRON	WARS1	ENSG00000140105.18	ENST00000392882.7:ENST00000358655.8:ENST00000355338.6:ENST00000344102.9:ENST00000557135.5:ENST00000556645.5:ENST00000554950.1:ENST00000557614.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	59	2	2.85177	3.973	5.09423	0.00204588	0.00169916	0.04086	0.0381936
chr18	9709943	9710043	6871788	0	+	0.44	(0.408,0.44]	chr18	680774	11	INTRON	INTRON	RAB31	ENSG00000168461.13	ENST00000578734.5:ENST00000578921.6:ENST00000581109.1:ENST00000583137.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	58	2	2.60048	3.97298	5.34548	0.00484324	9.40657e-4	0.0640618	0.0280776
chr21	36335883	36335981	7403846	0	+	0.44898	(0.44,0.476]	chr21	754285	18	INTRON	INTRON	MORC3	ENSG00000159256.13	ENST00000492336.5:ENST00000400485.6:ENST00000487909.5:ENST00000485933.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	60	2	2.981	3.972955	4.96491	0.0034249	9.31193e-4	0.0517761	0.0278746
chr3	10071875	10071974	1362667	0	+	0.545455	(0.515,0.57]	chr3	143557	42	INTRON	INTRON	FANCD2	ENSG00000144554.13	ENST00000287647.7:ENST00000676013.1:ENST00000675286.1:ENST00000419585.5:ENST00000681997.1:ENST00000683263.1:ENST00000421731.5:ENST00000470757.5:ENST00000480909.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	53	2	2.51561	3.9729	5.43019	0.00635044	2.60422e-4	0.0723103	0.0148796
chr1	35606769	35606868	421967	0	-	0.323232	(0.32,0.35]	chr1	50853	11	INTRON	INTRON	PSMB2	ENSG00000126067.12	ENST00000373237.4:ENST00000621781.4:ENST00000630477.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	22	2	3.77344	3.972625	4.17181	0.0596635	0.04531	0.189982	0.149888
chr1	65568088	65568187	138668	0	+	0.333333	(0.32,0.35]	chr1	15506	21	INTRON	INTRON	LEPR	ENSG00000116678.20	ENST00000371060.7:ENST00000371059.7:ENST00000349533.11:ENST00000616738.4:ENST00000344610.12:ENST00000462765.5:ENST00000371058.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	22	2	3.77344	3.972625	4.17181	0.0596635	0.04531	0.189982	0.149888
chr1	246558624	246558723	680911	0	-	0.323232	(0.32,0.35]	chr1	79822	7	INTRON	INTRON	TFB2M	ENSG00000162851.8	ENST00000366514.5	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.77344	3.972625	4.17181	0.0596635	0.04531	0.189982	0.149888
chr10	22633247	22633347	4579684	0	-	0.35	(0.32,0.35]	chr10	422018	232	INTRON	INTRON	PIP4K2A	ENSG00000150867.14	ENST00000376573.9:ENST00000545335.5	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.77344	3.972625	4.17181	0.0596635	0.04531	0.189982	0.149888
chr11	108682054	108682154	4858806	0	+	0.34	(0.32,0.35]	chr11	453444	21	INTRON	INTRON	DDX10	ENSG00000178105.12	ENST00000693015.1:ENST00000690021.1:ENST00000686283.1:ENST00000322536.8:ENST00000648124.1:ENST00000688583.1:ENST00000688536.1:ENST00000686617.1:ENST00000688976.1:ENST00000687072.1:ENST00000526794.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	22	2	3.77344	3.972625	4.17181	0.0596635	0.04531	0.189982	0.149888
chr12	1569167	1569267	5063347	0	+	0.34	(0.32,0.35]	chr12	477805	379	INTRON	INTRON	WNT5B	ENSG00000111186.13	ENST00000539198.5:ENST00000545811.5	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.77344	3.972625	4.17181	0.0596635	0.04531	0.189982	0.149888
chr12	68764107	68764203	5162660	0	+	0.322917	(0.32,0.35]	chr12	488838	15	INTRON	INTRON	SLC35E3	ENSG00000175782.11	ENST00000673712.1:ENST00000674096.1:ENST00000398004.4:ENST00000431174.2:ENST00000538043.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	22	2	3.77344	3.972625	4.17181	0.0596635	0.04531	0.189982	0.149888
chr12	74277817	74277916	5368228	0	-	0.343434	(0.32,0.35]	chr12	512132	80	INTRON	INTRON	LINC02882:ENSG00000257183	ENSG00000251138.7:ENSG00000257183.1	ENST00000663261.1:ENST00000665907.1:ENST00000669556.1:ENST00000653134.1:ENST00000549905.5:ENST00000662107.1:ENST00000658833.1:ENST00000515416.7:ENST00000551726.2:ENST00000670573.1:ENST00000656876.1:ENST00000668228.1:ENST00000668997.1:ENST00000665895.1:ENST00000670471.1:ENST00000658677.1:ENST00000668665.1:ENST00000552046.1	lncRNA	lncRNA	lncRNA	lncRNA	0	22	2	3.77344	3.972625	4.17181	0.0596635	0.04531	0.189982	0.149888
chr13	111218080	111218180	5545346	0	+	0.33	(0.32,0.35]	chr13	529789	2	SS5_PROX	SS5_PROX:INTRON	ARHGEF7	ENSG00000102606.19	ENST00000317133.9:ENST00000375739.6:ENST00000375741.6:ENST00000646102.2:ENST00000469877.5:ENST00000466143.5:ENST00000218789.9:ENST00000375736.8:ENST00000426073.6:ENST00000375723.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	22	2	3.77344	3.972625	4.17181	0.0596635	0.04531	0.189982	0.149888
chr15	41677447	41677546	6007027	0	+	0.333333	(0.32,0.35]	chr15	571636	25	INTRON	INTRON	MGA	ENSG00000174197.18	ENST00000566718.6:ENST00000545763.6:ENST00000570161.6:ENST00000566586.6:ENST00000219905.13:ENST00000561532.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	22	2	3.77344	3.972625	4.17181	0.0596635	0.04531	0.189982	0.149888
chr16	56454373	56454473	6359584	0	+	0.35	(0.32,0.35]	chr16	610347	2	SS3_PROX	SS3_PROX:INTRON	OGFOD1	ENSG00000087263.17	ENST00000561646.5:ENST00000562150.5:ENST00000569802.5:ENST00000565682.5:ENST00000336111.9:ENST00000563733.5:ENST00000568172.1:ENST00000566157.6:ENST00000568397.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	22	2	3.77344	3.972625	4.17181	0.0596635	0.04531	0.189982	0.149888
chr17	21014486	21014581	6742873	0	-	0.336842	(0.32,0.35]	chr17	662034	12	INTRON	INTRON	USP22	ENSG00000124422.12	ENST00000261497.9:ENST00000537526.6:ENST00000455117.6:ENST00000579645.5:ENST00000582335.1:ENST00000577610.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	22	2	3.77344	3.972625	4.17181	0.0596635	0.04531	0.189982	0.149888
chr19	45080728	45080828	7078904	0	+	0.35	(0.32,0.35]	chr19	708044	3	INTRON	INTRON	GEMIN7	ENSG00000142252.11	ENST00000591607.1:ENST00000591747.5:ENST00000270257.9:ENST00000592351.1:ENST00000391951.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	22	2	3.77344	3.972625	4.17181	0.0596635	0.04531	0.189982	0.149888
chr2	10045849	10045949	690591	0	+	0.35	(0.32,0.35]	chr2	81020	3	SS3_PROX	SS3_PROX:INTRON	KLF11	ENSG00000172059.11	ENST00000401510.5:ENST00000305883.6:ENST00000540845.5:ENST00000448523.5:ENST00000440320.5:ENST00000535335.1	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.77344	3.972625	4.17181	0.0596635	0.04531	0.189982	0.149888
chr2	33318839	33318939	739209	0	+	0.33	(0.32,0.35]	chr2	85020	10	INTRON	INTRON	LTBP1	ENSG00000049323.16	ENST00000404816.7:ENST00000418533.6:ENST00000402934.5:ENST00000404525.5:ENST00000407925.5:ENST00000415140.6:ENST00000422669.1	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.77344	3.972625	4.17181	0.0596635	0.04531	0.189982	0.149888
chr2	43933718	43933811	1109963	0	-	0.333333	(0.32,0.35]	chr2	119007	4	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	LRPPRC	ENSG00000138095.20	ENST00000260665.12:ENST00000682308.1:ENST00000683459.1:ENST00000683623.1:ENST00000683125.1:ENST00000683994.1:ENST00000684619.1:ENST00000683833.1:ENST00000682546.1:ENST00000682585.1:ENST00000683220.1:ENST00000683796.1:ENST00000682607.1:ENST00000683590.1:ENST00000684306.1:ENST00000683213.1:ENST00000682779.1:ENST00000682885.1:ENST00000684743.1:ENST00000683346.1:ENST00000683072.1:ENST00000682303.1:ENST00000683329.1:ENST00000682933.1:ENST00000684383.1:ENST00000682480.1:ENST00000684290.1:ENST00000684341.1:ENST00000682595.1:ENST00000683645.1:ENST00000683802.1:ENST00000682845.1:ENST00000684397.1:ENST00000681961.1:ENST00000683694.1:ENST00000683989.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	22	2	3.77344	3.972625	4.17181	0.0596635	0.04531	0.189982	0.149888
chr2	58238740	58238839	1126737	0	-	0.323232	(0.32,0.35]	chr2	120969	63	INTRON	INTRON	FANCL	ENSG00000115392.13	ENST00000696400.1:ENST00000403295.8:ENST00000696492.1:ENST00000427708.7:ENST00000696314.1:ENST00000696315.1:ENST00000696454.1:ENST00000696508.1:ENST00000696548.1:ENST00000696542.1:ENST00000696319.1:ENST00000403676.6:ENST00000696433.1:ENST00000696434.1:ENST00000696499.1:ENST00000696564.1:ENST00000402135.8:ENST00000696546.1:ENST00000233741.9:ENST00000696316.1:ENST00000696378.1:ENST00000696435.1:ENST00000696493.1:ENST00000696543.1:ENST00000696544.1:ENST00000696545.1:ENST00000696565.1:ENST00000696620.1:ENST00000696621.1:ENST00000696635.1:ENST00000696364.1:ENST00000696634.1:ENST00000696317.1:ENST00000696622.1:ENST00000696467.1:ENST00000696547.1:ENST00000449070.6:ENST00000696305.1:ENST00000417361.2:ENST00000696338.1:ENST00000696361.1:ENST00000696318.1:ENST00000696371.1:ENST00000696409.1:ENST00000696410.1:ENST00000696455.1:ENST00000696468.1:ENST00000696527.1:ENST00000696567.1:ENST00000696324.1:ENST00000696566.1:ENST00000696623.1:ENST00000446381.6:ENST00000696469.1:ENST00000696624.1:ENST00000696411.1:ENST00000470506.2:ENST00000696358.1:ENST00000696373.1:ENST00000696394.1:ENST00000696320.1:ENST00000696395.1:ENST00000696341.1:ENST00000696340.1:ENST00000696374.1:ENST00000696342.1:ENST00000696325.1:ENST00000696399.1:ENST00000696398.1:ENST00000696306.1:ENST00000696344.1:ENST00000696362.1:ENST00000696528.1:ENST00000696326.1:ENST00000696625.1:ENST00000696510.1:ENST00000696438.1:ENST00000696496.1:ENST00000696509.1:ENST00000696569.1:ENST00000696457.1:ENST00000696458.1:ENST00000696473.1:ENST00000696495.1:ENST00000696415.1:ENST00000696472.1:ENST00000696459.1:ENST00000696416.1:ENST00000696530.1:ENST00000696460.1:ENST00000696570.1:ENST00000696531.1:ENST00000696307.1:ENST00000696345.1:ENST00000696377.1:ENST00000696417.1:ENST00000696594.1:ENST00000696595.1:ENST00000696379.1:ENST00000696346.1:ENST00000696347.1:ENST00000696461.1:ENST00000696596.1:ENST00000696549.1:ENST00000696597.1:ENST00000696550.1:ENST00000696598.1:ENST00000696321.1:ENST00000696476.1:ENST00000696477.1:ENST00000696511.1:ENST00000481670.3:ENST00000696403.1:ENST00000696551.1:ENST00000696308.1:ENST00000696418.1:ENST00000696404.1:ENST00000696478.1:ENST00000696419.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	22	2	3.77344	3.972625	4.17181	0.0596635	0.04531	0.189982	0.149888
chr2	168580611	168580711	903405	0	+	0.35	(0.32,0.35]	chr2	99772	189	INTRON	INTRON	CERS6	ENSG00000172292.15	ENST00000392687.4:ENST00000305747.11	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.77344	3.972625	4.17181	0.0596635	0.04531	0.189982	0.149888
chr2	232750473	232750572	1037782	0	+	0.323232	(0.32,0.35]	chr2	110668	10	INTRON	INTRON	GIGYF2	ENSG00000204120.16	ENST00000629305.2:ENST00000428883.5:ENST00000409480.5:ENST00000456491.5:ENST00000373563.9:ENST00000409547.5:ENST00000430720.5:ENST00000425040.5:ENST00000421433.5:ENST00000423659.5:ENST00000409196.7:ENST00000409451.7:ENST00000463554.5:ENST00000440945.5:ENST00000429187.5:ENST00000424038.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	22	2	3.77344	3.972625	4.17181	0.0596635	0.04531	0.189982	0.149888
chr2	240024130	240024229	1345728	0	-	0.323232	(0.32,0.35]	chr2	141132	14	INTRON	INTRON	NDUFA10	ENSG00000130414.13	ENST00000679183.1:ENST00000677057.1:ENST00000676782.1:ENST00000677407.1:ENST00000676929.1:ENST00000678455.1:ENST00000252711.7:ENST00000677692.1:ENST00000476216.6:ENST00000677395.1:ENST00000678188.1:ENST00000677979.1:ENST00000678914.1:ENST00000678562.1:ENST00000678832.1:ENST00000677155.1:ENST00000677764.1:ENST00000677294.1:ENST00000678468.1:ENST00000678158.1:ENST00000676491.1:ENST00000677114.1:ENST00000404554.5:ENST00000620965.5:ENST00000485344.6:ENST00000679308.1:ENST00000677567.1:ENST00000679158.1:ENST00000443626.5:ENST00000444548.6:ENST00000448880.6:ENST00000677490.1:ENST00000307300.8:ENST00000678898.1:ENST00000677368.1:ENST00000677263.1:ENST00000678289.1:ENST00000676784.1:ENST00000414580.2:ENST00000679332.1:ENST00000678737.1:ENST00000407129.3:ENST00000497536.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	22	2	3.77344	3.972625	4.17181	0.0596635	0.04531	0.189982	0.149888
chr20	41613908	41614008	7344500	0	-	0.35	(0.32,0.35]	chr20	748566	494	INTRON	INTRON	CHD6	ENSG00000124177.16	ENST00000373233.8:ENST00000373222.3:ENST00000482596.1:ENST00000440647.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	22	2	3.77344	3.972625	4.17181	0.0596635	0.04531	0.189982	0.149888
chr21	10510248	10510347	7369116	0	+	0.333333	(0.32,0.35]	chr21	752052	89	INTRON	INTRON	BAGE2:ENSG00000273840	ENSG00000187172.15:ENSG00000273840.1	ENST00000496773.1:ENST00000612267.1	lncRNA	lncRNA	lncRNA:transcribed_unprocessed_pseudogene	lncRNA:transcribed_unprocessed_pseudogene	0	22	2	3.77344	3.972625	4.17181	0.0596635	0.04531	0.189982	0.149888
chr21	43069015	43069115	7468099	0	-	0.33	(0.32,0.35]	chr21	761071	4	SS3_PROX	SS3_PROX:INTRON	CBS	ENSG00000160200.18	ENST00000352178.9:ENST00000359624.7:ENST00000398165.8:ENST00000398158.5:ENST00000441030.5:ENST00000470912.5:ENST00000465732.5:ENST00000488526.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	22	2	3.77344	3.972625	4.17181	0.0596635	0.04531	0.189982	0.149888
chr22	24563989	24564089	7488458	0	+	0.34	(0.32,0.35]	chr22	764098	58	INTRON	INTRON	SNRPD3:ENSG00000286070	ENSG00000100028.12:ENSG00000286070.2	ENST00000215829.8:ENST00000652248.1:ENST00000402849.5:ENST00000404603.5:ENST00000439775.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	22	2	3.77344	3.972625	4.17181	0.0596635	0.04531	0.189982	0.149888
chr3	33843139	33843233	1394851	0	+	0.329787	(0.32,0.35]	chr3	146102	7	INTRON	INTRON	PDCD6IP	ENSG00000170248.15	ENST00000457054.6:ENST00000648706.1:ENST00000307296.8:ENST00000412887.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	22	2	3.77344	3.972625	4.17181	0.0596635	0.04531	0.189982	0.149888
chr3	88162559	88162659	1458026	0	+	0.33	(0.32,0.35]	chr3	153232	47	INTRON	INTRON	C3orf38	ENSG00000179021.10	ENST00000485219.1	protein_coding	processed_transcript	protein_coding	processed_transcript	0	22	2	3.77344	3.972625	4.17181	0.0596635	0.04531	0.189982	0.149888
chr4	174237222	174237316	2300075	0	-	0.329787	(0.32,0.35]	chr4	222457	7	UTR3	UTR3:EXON_MRNA	FBXO8	ENSG00000164117.14	ENST00000393674.7:ENST00000615392.4:ENST00000503293.5	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.77344	3.972625	4.17181	0.0596635	0.04531	0.189982	0.149888
chr5	109857632	109857731	2450710	0	+	0.343434	(0.32,0.35]	chr5	234701	19	INTRON	INTRON	MAN2A1	ENSG00000112893.10	ENST00000261483.5:ENST00000513921.1:ENST00000505313.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	22	2	3.77344	3.972625	4.17181	0.0596635	0.04531	0.189982	0.149888
chr6	17673809	17673908	3065877	0	-	0.333333	(0.32,0.35]	chr6	284852	39	INTRON	INTRON	NUP153	ENSG00000124789.12	ENST00000613258.4:ENST00000537253.5:ENST00000262077.3	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.77344	3.972625	4.17181	0.0596635	0.04531	0.189982	0.149888
chr6	109122090	109122190	2935660	0	+	0.35	(0.32,0.35]	chr6	276355	156	INTRON	INTRON	CEP57L1	ENSG00000183137.15	ENST00000521277.5:ENST00000521737.5:ENST00000407272.5:ENST00000519286.5:ENST00000518329.5:ENST00000522461.5:ENST00000518853.5:ENST00000521522.5:ENST00000524064.5:ENST00000522608.5:ENST00000517392.6:ENST00000519407.5:ENST00000521503.5:ENST00000519095.5:ENST00000520610.5:ENST00000368968.6:ENST00000522490.5:ENST00000523209.5:ENST00000368970.6:ENST00000520883.5:ENST00000520761.1:ENST00000523787.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	22	2	3.77344	3.972625	4.17181	0.0596635	0.04531	0.189982	0.149888
chr6	110220369	110220467	2938595	0	+	0.326531	(0.32,0.35]	chr6	276730	1	INTRON	INTRON	CDC40	ENSG00000168438.15	ENST00000368932.5:ENST00000606893.5:ENST00000368930.5:ENST00000307731.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	22	2	3.77344	3.972625	4.17181	0.0596635	0.04531	0.189982	0.149888
chr6	147777539	147777639	2991774	0	+	0.34	(0.32,0.35]	chr6	280177	401	INTRON	INTRON	ENSG00000227681	ENSG00000227681.5	ENST00000427015.1	lncRNA	lncRNA	lncRNA	lncRNA	0	22	2	3.77344	3.972625	4.17181	0.0596635	0.04531	0.189982	0.149888
chr7	30858029	30858123	3302736	0	+	0.329787	(0.32,0.35]	chr7	306690	4	EXON_MRNA	EXON_MRNA:INTRON	MINDY4	ENSG00000106125.14	ENST00000265299.6:ENST00000409881.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	22	2	3.77344	3.972625	4.17181	0.0596635	0.04531	0.189982	0.149888
chr8	28939438	28939538	3725347	0	+	0.35	(0.32,0.35]	chr8	346257	143	INTRON	INTRON	HMBOX1	ENSG00000147421.18	ENST00000287701.15:ENST00000558662.5:ENST00000519662.5:ENST00000397358.7:ENST00000560599.5:ENST00000523613.5:ENST00000560357.5:ENST00000521516.5:ENST00000519047.5:ENST00000560269.1:ENST00000355231.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	22	2	3.77344	3.972625	4.17181	0.0596635	0.04531	0.189982	0.149888
chr8	65840484	65840580	3961001	0	-	0.34375	(0.32,0.35]	chr8	363387	19	INTRON	INTRON	PDE7A	ENSG00000205268.11	ENST00000401827.8:ENST00000396642.7:ENST00000519231.5:ENST00000519626.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	22	2	3.77344	3.972625	4.17181	0.0596635	0.04531	0.189982	0.149888
chrY	11187191	11187291	7929884	0	-	0.35	(0.32,0.35]	chrY	807176	237	INTRON	INTRON	ENSG00000278212	ENSG00000278212.3	ENST00000652671.1:ENST00000651211.2:ENST00000687423.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	22	2	3.77344	3.972625	4.17181	0.0596635	0.04531	0.189982	0.149888
chr3	152317530	152317630	1535474	0	+	0.54	(0.515,0.57]	chr3	159996	152	INTRON	INTRON	MBNL1	ENSG00000152601.18	ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000495875.6:ENST00000324210.10:ENST00000493459.5:ENST00000459747.1:ENST00000460591.5:ENST00000545754.5:ENST00000357472.7:ENST00000324196.9:ENST00000498502.5:ENST00000463374.5:ENST00000485910.5:ENST00000465907.6:ENST00000492948.5:ENST00000485509.5:ENST00000464596.5	protein_coding	protein_coding	protein_coding	protein_coding	3	67	2	2.24433	3.9726150000000002	5.7009	0.00725078	2.61423e-5	0.072984	0.00402177
chr5	81989547	81989645	2402877	0	+	0.336735	(0.32,0.35]	chr5	232114	15	INTRON	INTRON	ATG10	ENSG00000152348.16	ENST00000282185.8:ENST00000355178.8:ENST00000458350.7:ENST00000513443.5:ENST00000504770.5:ENST00000513634.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	52	2	2.51061	3.9726049999999997	5.4346	0.0364463	4.09682e-4	0.138959	0.0181306
chr8	11865363	11865463	3908836	0	-	0.33	(0.32,0.35]	chr8	358226	1	SS5_ADJ	SS5_ADJ:SS3_PROX:SS5_PROX:INTRON	CTSB	ENSG00000164733.22	ENST00000677671.1:ENST00000678092.1:ENST00000679128.1:ENST00000677873.1:ENST00000676691.1:ENST00000678598.1:ENST00000353047.11:ENST00000677650.1:ENST00000526481.7:ENST00000676825.1:ENST00000678242.1:ENST00000677366.1:ENST00000677544.1:ENST00000530640.7:ENST00000677418.1:ENST00000677047.1:ENST00000676502.1:ENST00000531089.6:ENST00000678629.1:ENST00000678145.1:ENST00000678929.1:ENST00000677819.1:ENST00000677415.1:ENST00000678357.1:ENST00000676755.1:ENST00000679051.1:ENST00000453527.7:ENST00000678067.1:ENST00000679140.1:ENST00000677082.1:ENST00000533455.6:ENST00000531551.5:ENST00000534382.6:ENST00000679214.1:ENST00000531502.6:ENST00000534510.6:ENST00000677865.1:ENST00000533572.6:ENST00000345125.8:ENST00000526645.6:ENST00000534149.6:ENST00000505496.7:ENST00000532392.2:ENST00000676843.1:ENST00000524500.6:ENST00000525076.6:ENST00000527215.7:ENST00000528965.2:ENST00000532656.7:ENST00000526195.6:ENST00000678615.1:ENST00000527243.6:ENST00000530296.6:ENST00000534636.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	52	2	2.51061	3.9726049999999997	5.4346	0.0364463	4.09682e-4	0.138959	0.0181306
chr4	70978230	70978329	1971269	0	+	0.30303	(0.28,0.32]	chr4	197601	16	INTRON	INTRON	MOB1B	ENSG00000173542.9	ENST00000309395.7:ENST00000396051.2:ENST00000511449.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	55	2	2.91851	3.9725849999999996	5.02666	0.0130672	0.0027935	0.093385	0.0488769
chr6	140631094	140631194	2972770	0	+	0.51	(0.476,0.515]	chr6	279037	204	INTRON	INTRON	ENSG00000288714	ENSG00000288714.1	ENST00000684511.1	lncRNA	lncRNA	lncRNA	lncRNA	1	48	2	3.24596	3.97257	4.69918	0.00400966	0.00322919	0.057767	0.0507087
chr7	102368364	102368464	3371118	0	+	0.35	(0.32,0.35]	chr7	315430	19	INTRON	INTRON	PRKRIP1:ENSG00000239969	ENSG00000128563.13:ENSG00000239969.6	ENST00000477886.5:ENST00000469763.5:ENST00000482549.5:ENST00000496391.5:ENST00000484974.5:ENST00000492837.1:ENST00000482465.5	protein_coding	protein_coding	protein_coding:transcribed_unprocessed_pseudogene	protein_coding:processed_transcript	2	64	2	2.35591	3.97257	5.58923	0.0128129	8.12357e-4	0.0990564	0.0263656
chr2	70211328	70211427	1152067	0	-	0.353535	(0.35,0.378]	chr2	123027	20	UTR3	UTR3:EXON_MRNA:INTRON	C2orf42:TIA1	ENSG00000115998.8:ENSG00000116001.17	ENST00000470096.1:ENST00000415783.6:ENST00000433529.7:ENST00000282574.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	70	2	2.79472	3.9724399999999997	5.15016	0.00303911	9.78549e-4	0.0493883	0.0287765
chr6	17664838	17664938	3065784	0	-	0.49	(0.476,0.515]	chr6	284835	2	SS5_PROX	SS5_PROX:INTRON	NUP153	ENSG00000124789.12	ENST00000613258.4:ENST00000537253.5:ENST00000262077.3	protein_coding	protein_coding	protein_coding	protein_coding	1	46	2	2.8863	3.972385	5.05847	0.0111679	0.00108081	0.0877435	0.0300133
chrX	120613163	120613263	7714013	0	+	0.51	(0.476,0.515]	chrX	789359	10	UTR3	UTR3:EXON_MRNA	MCTS1	ENSG00000232119.8	ENST00000371317.10	protein_coding	protein_coding	protein_coding	protein_coding	1	46	2	2.8863	3.972385	5.05847	0.0111679	0.00108081	0.0877435	0.0300133
chr1	247191710	247191809	683908	0	-	0.30303	(0.28,0.32]	chr1	80183	3	INTRON	INTRON	ZNF731P	ENSG00000227671.4	ENST00000421406.1	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	1	50	2	3.07744	3.972375	4.86731	0.0116253	0.00604536	0.0889104	0.0700813
chr21	28973339	28973439	7436497	0	-	0.29	(0.28,0.32]	chr21	758418	15	INTRON	INTRON	LTN1	ENSG00000198862.14	ENST00000614971.4:ENST00000389194.7:ENST00000361371.10:ENST00000389195.7:ENST00000483326.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	50	2	3.07744	3.972375	4.86731	0.0116253	0.00604536	0.0889104	0.0700813
chr3	43509321	43509421	1674307	0	-	0.34	(0.32,0.35]	chr3	170972	762	INTRON	INTRON	ANO10	ENSG00000160746.13	ENST00000292246.8:ENST00000350459.8:ENST00000396091.7:ENST00000414522.6:ENST00000451430.6:ENST00000448045.1	protein_coding	protein_coding	protein_coding	protein_coding	1	49	2	2.56618	3.972255	5.37833	0.0274185	0.00174321	0.136498	0.0375363
chr7	92749146	92749246	3572385	0	-	0.45	(0.44,0.476]	chr7	332804	230	INTRON	INTRON	CDK6	ENSG00000105810.10	ENST00000424848.3:ENST00000265734.8	protein_coding	protein_coding	protein_coding	protein_coding	2	58	2	2.49823	3.9722150000000003	5.4462	0.00718224	5.83686e-4	0.0756118	0.0223753
chr1	3889499	3889591	364543	0	-	0.5	(0.476,0.515]	chr1	42791	5	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	C1orf174	ENSG00000198912.12	ENST00000474140.1:ENST00000486765.5:ENST00000361605.4:ENST00000679703.1:ENST00000680054.1:ENST00000680279.1:ENST00000681823.1:ENST00000679946.1:ENST00000680169.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	58	2	2.53671	3.9722	5.40769	0.00624027	6.23078e-4	0.0718843	0.0229151
chr8	42320113	42320206	3743448	0	+	0.494624	(0.476,0.515]	chr8	348140	6	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	IKBKB	ENSG00000104365.16	ENST00000520810.6:ENST00000629753.2:ENST00000517890.5:ENST00000520835.7:ENST00000523105.5:ENST00000518679.5:ENST00000342222.6:ENST00000520201.5:ENST00000521661.5:ENST00000520655.5:ENST00000522147.4:ENST00000523517.5:ENST00000416505.7:ENST00000649612.3:ENST00000648136.2:ENST00000676525.1:ENST00000517502.5:ENST00000523599.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	58	2	2.53671	3.9722	5.40769	0.00624027	6.23078e-4	0.0718843	0.0229151
chr13	41261015	41261102	5578519	0	-	0.574713	(0.57,1]	chr13	533287	1	SS3_PROX	SS3_PROX:INTRON	MTRF1	ENSG00000120662.16	ENST00000379480.9:ENST00000379477.5:ENST00000239852.10:ENST00000452359.5:ENST00000497679.6:ENST00000430347.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	55	2	3.69986	3.972165	4.24447	1.9698e-4	7.02904e-6	0.0122531	0.00198457
chr9	112147755	112147854	4316505	0	-	0.272727	[0,0.28]	chr9	396981	17	INTRON	INTRON	SUSD1	ENSG00000106868.17	ENST00000374270.8:ENST00000374263.7:ENST00000355396.7:ENST00000374264.6	protein_coding	protein_coding	protein_coding	protein_coding	1	59	2	2.59548	3.9721349999999997	5.34879	0.0346067	0.00157139	0.136649	0.0365659
chr9	131403843	131403943	4217067	0	+	0.25	[0,0.28]	chr9	386720	92	INTRON	INTRON	PRRC2B	ENSG00000288701.1	ENST00000682525.1:ENST00000684596.1:ENST00000683519.1:ENST00000682501.1	protein_coding	protein_coding	protein_coding	protein_coding	1	59	2	2.59548	3.9721349999999997	5.34879	0.0346067	0.00157139	0.136649	0.0365659
chr4	1719428	1719528	2095277	0	-	0.56	(0.515,0.57]	chr4	207254	2	SS3_PROX	SS3_PROX:INTRON	TMEM129	ENSG00000168936.11	ENST00000303277.6:ENST00000382936.8:ENST00000536901.1:ENST00000480360.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	133	2	3.33132	3.97211	4.6129	3.06542e-5	1.13683e-6	0.00459725	6.13464e-4
chr1	211283798	211283898	305947	0	+	0.27	[0,0.28]	chr1	35277	41	INTRON	INTRON	RCOR3	ENSG00000117625.14	ENST00000367006.8:ENST00000419091.7:ENST00000452621.6:ENST00000528926.5:ENST00000367005.8:ENST00000534460.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	59	2	2.64309	3.972095	5.3011	0.0308646	0.00185843	0.13151	0.039946
chr15	101744713	101744804	6271245	0	-	0.252747	[0,0.28]	chr15	598240	4	EXON_LNCRNA	EXON_LNCRNA:SS3_PROX:INTRON	ENSG00000259658	ENSG00000259658.5	ENST00000636288.2:ENST00000635726.1:ENST00000558592.1:ENST00000560292.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	1	59	2	2.64309	3.972095	5.3011	0.0308646	0.00185843	0.13151	0.039946
chr11	120417678	120417777	4877017	0	+	0.454545	(0.44,0.476]	chr11	455815	60	INTRON	INTRON	ARHGEF12	ENSG00000196914.9	ENST00000397843.7:ENST00000356641.7:ENST00000532993.5:ENST00000529970.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	44	2	3.25801	3.971825	4.68564	0.00816201	0.00248185	0.0766625	0.0460771
chr5	66029538	66029637	2371894	0	+	0.464646	(0.44,0.476]	chr5	228560	8	INTRON	INTRON	ERBIN	ENSG00000112851.15	ENST00000380943.6:ENST00000416865.6:ENST00000380935.5:ENST00000284037.10:ENST00000380938.6:ENST00000511297.5:ENST00000506030.5:ENST00000508515.1	protein_coding	protein_coding	protein_coding	protein_coding	1	44	2	3.25801	3.971825	4.68564	0.00816201	0.00248185	0.0766625	0.0460771
chr11	13716734	13716833	4742804	0	+	0.272727	[0,0.28]	chr11	439210	10	INTRON	INTRON	FAR1	ENSG00000197601.13	ENST00000354817.8	protein_coding	protein_coding	protein_coding	protein_coding	10	157	2	1.444	3.97151	6.49902	0.0231577	8.78851e-5	0.127017	0.00842539
chr1	17417640	17417739	384760	0	-	0.434343	(0.408,0.44]	chr1	45465	6	INTRON	INTRON	RCC2	ENSG00000179051.14	ENST00000375436.9:ENST00000375433.3	protein_coding	protein_coding	protein_coding	protein_coding	7	260	2	3.46292	3.971325	4.47973	1.0328e-6	2.79272e-7	5.83625e-4	2.87652e-4
chr9	83686355	83686455	4272866	0	-	0.39	(0.378,0.408]	chr9	392980	2	SS3_PROX	SS3_PROX:INTRON	UBQLN1	ENSG00000135018.14	ENST00000376395.9:ENST00000257468.11:ENST00000529923.1	protein_coding	protein_coding	protein_coding	protein_coding	1	45	2	3.27907	3.971225	4.66338	0.0103469	0.0023379	0.0850389	0.0442989
chr11	47530960	47531060	4950181	0	-	0.58	(0.57,1]	chr11	464246	63	INTRON	INTRON	CELF1	ENSG00000149187.19	ENST00000310513.10:ENST00000687097.1:ENST00000531165.5:ENST00000530151.5:ENST00000525841.5:ENST00000526419.1	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	3.2676	3.971015	4.67443	0.00176203	8.07515e-4	0.0376652	0.0258804
chr19	1582321	1582421	7112414	0	-	0.61	(0.57,1]	chr19	714517	3	SS5_PROX	SS5_PROX:INTRON	MBD3:ENSG00000267059	ENSG00000071655.18:ENSG00000267059.2	ENST00000434436.8:ENST00000156825.5:ENST00000590550.6:ENST00000592012.5:ENST00000589064.5:ENST00000590830.5:ENST00000585937.1:ENST00000585903.1:ENST00000585967.5:ENST00000592361.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	30	2	3.2676	3.971015	4.67443	0.00176203	8.07515e-4	0.0376652	0.0258804
chr21	43882043	43882143	7413958	0	+	0.63	(0.57,1]	chr21	755688	143	INTRON	INTRON	AGPAT3	ENSG00000160216.21	ENST00000291572.13:ENST00000448287.5	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	3.2676	3.971015	4.67443	0.00176203	8.07515e-4	0.0376652	0.0258804
chr22	44166409	44166508	7529789	0	+	0.616162	(0.57,1]	chr22	769842	21	INTRON	INTRON	PARVB	ENSG00000188677.15	ENST00000406477.7:ENST00000338758.12:ENST00000619710.4:ENST00000404989.1:ENST00000484345.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	30	2	3.2676	3.971015	4.67443	0.00176203	8.07515e-4	0.0376652	0.0258804
chr10	21597339	21597439	4405050	0	+	0.38	(0.378,0.408]	chr10	406466	15	INTRON	INTRON	MLLT10	ENSG00000078403.17	ENST00000651097.1:ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000650772.1:ENST00000651298.1:ENST00000495130.5:ENST00000377059.7:ENST00000652258.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	183	2	3.53831	3.971	4.40369	1.74396e-5	1.9423e-6	0.00335687	8.47188e-4
chr7	75458610	75458710	3558653	0	-	0.4	(0.378,0.408]	chr7	331545	160	INTRON	INTRON	POM121C	ENSG00000272391.6	ENST00000615331.5:ENST00000398379.2	protein_coding	protein_coding	protein_coding	protein_coding	2	59	2	2.56408	3.9707350000000003	5.37739	0.00566993	0.0010014	0.0678837	0.0288906
chr8	22409355	22409445	3713055	0	+	0.4	(0.378,0.408]	chr8	344825	5	INTRON	INTRON	SLC39A14	ENSG00000104635.15	ENST00000359741.10:ENST00000381237.6:ENST00000240095.10:ENST00000289952.9:ENST00000522881.2	protein_coding	protein_coding	protein_coding	protein_coding	1	48	2	2.60296	3.970625	5.33829	0.0267851	3.59275e-4	0.123349	0.0169207
chr3	31599160	31599259	1392063	0	+	0.242424	[0,0.28]	chr3	145704	19	INTRON	INTRON	STT3B	ENSG00000163527.10	ENST00000453168.5:ENST00000295770.4:ENST00000423527.5:ENST00000462235.5:ENST00000436236.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	59	2	2.54624	3.970595	5.39495	0.0388449	0.00133175	0.143072	0.0335129
chr10	86924509	86924608	4481092	0	+	0.383838	(0.378,0.408]	chr10	412366	9	UTR3	UTR3:EXON_MRNA	BMPR1A	ENSG00000107779.14	ENST00000638429.1:ENST00000372037.8:ENST00000635816.1:ENST00000636056.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	45	2	2.71183	3.970535	5.22924	0.0170789	0.00172721	0.110899	0.0374701
chr1	61306246	61306346	129640	0	+	0.38	(0.378,0.408]	chr1	14801	283	INTRON	INTRON	NFIA	ENSG00000162599.17	ENST00000371191.5:ENST00000664495.1:ENST00000476646.5:ENST00000407417.7:ENST00000479364.1:ENST00000371189.8:ENST00000670151.1:ENST00000664149.1:ENST00000662015.1:ENST00000403491.8:ENST00000371187.7:ENST00000485903.6:ENST00000371185.6:ENST00000371184.6:ENST00000663597.1:ENST00000657234.1:ENST00000655770.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	48	2	2.95459	3.97023	4.98587	0.00957623	0.00152268	0.0820838	0.0360297
chr9	130873437	130873537	4215463	0	+	0.4	(0.378,0.408]	chr9	386459	4	SS5_PROX	SS5_PROX:INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000318560.6	protein_coding	protein_coding	protein_coding	protein_coding	1	48	2	2.95459	3.97023	4.98587	0.00957623	0.00152268	0.0820838	0.0360297
chr16	2259048	2259145	6431601	0	-	0.43299	(0.408,0.44]	chr16	618787	4	INTRON	INTRON	RNPS1	ENSG00000205937.12	ENST00000397086.6:ENST00000566458.5:ENST00000320225.10:ENST00000566397.5:ENST00000565678.5:ENST00000561718.5:ENST00000568631.5:ENST00000569598.6:ENST00000301730.12:ENST00000567147.5:ENST00000565870.5:ENST00000561518.5:ENST00000564311.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	155	2	3.23487	3.9701049999999998	4.70534	8.73464e-5	9.57119e-7	0.00840177	5.54959e-4
chr4	110103301	110103401	2226780	0	-	0.28	[0,0.28]	chr4	218018	98	INTRON	INTRON	ELOVL6	ENSG00000170522.10	ENST00000394607.7:ENST00000302274.8:ENST00000514184.5:ENST00000506625.5:ENST00000506461.1:ENST00000503885.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	55	2	2.5055	3.9698900000000004	5.43428	0.0359431	0.00400834	0.152322	0.0551303
chr12	31979682	31979781	5106807	0	+	0.414141	(0.408,0.44]	chr12	482333	90	INTRON	INTRON	RESF1	ENSG00000174718.12	ENST00000541981.5:ENST00000540924.5:ENST00000312561.9:ENST00000535596.5:ENST00000397578.7:ENST00000381054.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	58	2	2.69457	3.9697899999999997	5.24501	0.00331036	0.00137378	0.0527031	0.0336718
chr16	74888068	74888168	6526289	0	-	0.36	(0.35,0.378]	chr16	632016	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	WDR59	ENSG00000103091.15	ENST00000262144.11:ENST00000563797.5	protein_coding	protein_coding	protein_coding	protein_coding	2	69	2	2.73164	3.9695349999999996	5.20743	0.00387645	7.78116e-4	0.0543578	0.0256531
chr2	10193099	10193199	691435	0	+	0.61	(0.57,1]	chr2	81109	370	INTRON	INTRON	RRM2	ENSG00000171848.16	ENST00000641498.1:ENST00000381786.7	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	1	31	2	3.49517	3.969415	4.44366	0.00210922	6.03609e-4	0.0425419	0.0226059
chr6	149730916	149731014	3246809	0	-	0.377551	(0.35,0.378]	chr6	301671	34	INTRON	INTRON	NUP43	ENSG00000120253.14	ENST00000340413.7:ENST00000367404.8	protein_coding	protein_coding	protein_coding	protein_coding	7	282	2	3.46432	3.9692849999999997	4.47425	1.38885e-6	4.78138e-7	6.98781e-4	3.97412e-4
chr17	36549937	36550037	6601907	0	+	0.48	(0.476,0.515]	chr17	642547	23	INTRON	INTRON	GGNBP2	ENSG00000278311.5	ENST00000613102.5:ENST00000617860.4:ENST00000618837.4:ENST00000616019.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	44	2	2.73205	3.96925	5.20645	0.0159328	0.00136049	0.109464	0.0336321
chr9	272501	272591	4088645	0	+	0.511111	(0.476,0.515]	chr9	372406	4	INTRON	INTRON	DOCK8	ENSG00000107099.18	ENST00000469197.5:ENST00000432829.7:ENST00000524396.5:ENST00000682121.1:ENST00000454469.6:ENST00000684384.1:ENST00000684166.1:ENST00000382329.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	44	2	2.73205	3.96925	5.20645	0.0159328	0.00136049	0.109464	0.0336321
chr1	245846500	245846600	674087	0	-	0.38	(0.378,0.408]	chr1	79669	317	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000366517.5:ENST00000366516.5:ENST00000490107.6:ENST00000470510.5:ENST00000483072.5:ENST00000493441.5:ENST00000488153.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	59	2	2.65815	3.96924	5.28033	0.00391167	0.00143651	0.0569957	0.0340925
chr15	63521170	63521269	6042067	0	+	0.393939	(0.378,0.408]	chr15	575355	53	INTRON	INTRON	USP3	ENSG00000140455.17	ENST00000540797.5:ENST00000380324.8:ENST00000561442.5:ENST00000560070.5:ENST00000557884.5:ENST00000558157.5:ENST00000561326.5:ENST00000559873.5:ENST00000559192.5:ENST00000559771.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	59	2	2.65815	3.96924	5.28033	0.00391167	0.00143651	0.0569957	0.0340925
chr3	25642021	25642121	1641938	0	-	0.41	(0.408,0.44]	chr3	168581	3	SS5_PROX	SS5_PROX:INTRON	TOP2B	ENSG00000077097.16	ENST00000264331.9:ENST00000435706.6:ENST00000424225.1	protein_coding	protein_coding	protein_coding	protein_coding	1	44	2	3.25948	3.96921	4.67894	0.0087648	0.00246454	0.0788605	0.0459102
chr1	204404251	204404348	621964	0	-	0.536082	(0.515,0.57]	chr1	73936	10	UTR3	UTR3:EXON_MRNA:INTRON	PPP1R15B	ENSG00000158615.10	ENST00000693720.1:ENST00000367188.5:ENST00000689921.1:ENST00000690849.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	209	2	2.58256	3.968925	5.35529	5.39663e-5	1.03301e-8	0.00601743	2.81154e-5
chr12	94455965	94456065	5390075	0	-	0.44	(0.408,0.44]	chr12	513890	203	INTRON	INTRON	CEP83	ENSG00000173588.16	ENST00000397809.10:ENST00000339839.9:ENST00000547232.5:ENST00000547575.5:ENST00000546527.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	48	2	3.15414	3.96881	4.78348	0.00469847	0.00290352	0.0600108	0.0494641
chr15	28147831	28147930	6122243	0	-	0.434343	(0.408,0.44]	chr15	583058	11	INTRON	INTRON	HERC2	ENSG00000128731.18	ENST00000261609.13:ENST00000650509.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	48	2	3.15414	3.96881	4.78348	0.00469847	0.00290352	0.0600108	0.0494641
chr1	6652252	6652328	368565	0	-	0.473684	(0.44,0.476]	chr1	43324	3	INTRON	INTRON	DNAJC11	ENSG00000007923.17	ENST00000451196.5:ENST00000377577.10:ENST00000690452.1:ENST00000685129.1:ENST00000472414.2:ENST00000688524.1:ENST00000686243.1:ENST00000690062.1:ENST00000689474.1:ENST00000294401.11:ENST00000426784.1:ENST00000473993.5:ENST00000685485.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	46	2	2.49112	3.96866	5.4462	0.0315968	5.83686e-4	0.144381	0.0223753
chr1	108273590	108273689	518333	0	-	0.545455	(0.515,0.57]	chr1	60846	9	EXON_LNCRNA	EXON_LNCRNA	ENSG00000238122	ENSG00000238122.1	ENST00000438965.1	lncRNA	lncRNA	lncRNA	lncRNA	1	40	2	3.25412	3.96861	4.6831	0.00471288	0.00224554	0.0600108	0.0435144
chr1	117098538	117098636	197201	0	+	0.428571	(0.408,0.44]	chr1	21904	4	EXON_LNCRNA	EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TTF2	ENSG00000116830.12	ENST00000369466.9:ENST00000492682.5:ENST00000463696.1:ENST00000427271.1:ENST00000480701.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	44	2	2.74518	3.9686000000000003	5.19202	0.0152229	0.0016671	0.108535	0.0369207
chr19	21746989	21747089	7159097	0	-	0.41	(0.408,0.44]	chr19	723728	1	SS3_PROX	SS3_PROX:INTRON	ZNF100	ENSG00000197020.12	ENST00000358296.11:ENST00000305570.10:ENST00000594401.1:ENST00000598026.1	protein_coding	protein_coding	protein_coding	protein_coding	1	44	2	2.74518	3.9686000000000003	5.19202	0.0152229	0.0016671	0.108535	0.0369207
chr22	29355832	29355925	7574000	0	-	0.408602	(0.408,0.44]	chr22	774597	6	INTRON	INTRON	AP1B1	ENSG00000100280.17	ENST00000357586.7:ENST00000432560.6:ENST00000405198.6:ENST00000317368.11:ENST00000421126.5	protein_coding	protein_coding	protein_coding	protein_coding	1	44	2	2.74518	3.9686000000000003	5.19202	0.0152229	0.0016671	0.108535	0.0369207
chr5	138317486	138317586	2732058	0	-	0.44	(0.408,0.44]	chr5	257317	4	SS3_PROX	SS3_PROX:INTRON	CDC25C	ENSG00000158402.21	ENST00000323760.11:ENST00000415130.6:ENST00000648466.1:ENST00000513970.5:ENST00000514555.5:ENST00000503022.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	44	2	2.74518	3.9686000000000003	5.19202	0.0152229	0.0016671	0.108535	0.0369207
chr6	4837907	4838007	2791478	0	+	0.43	(0.408,0.44]	chr6	263602	12	INTRON	INTRON	CDYL	ENSG00000153046.18	ENST00000328908.9:ENST00000491864.1:ENST00000440139.5:ENST00000483019.1:ENST00000397588.8:ENST00000472453.5:ENST00000449732.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	44	2	2.74518	3.9686000000000003	5.19202	0.0152229	0.0016671	0.108535	0.0369207
chr6	157838292	157838392	3015913	0	+	0.28	[0,0.28]	chr6	281353	82	INTRON	INTRON	SNX9	ENSG00000130340.17	ENST00000614703.4:ENST00000614800.4:ENST00000680863.1:ENST00000679814.1:ENST00000680464.1:ENST00000681186.1:ENST00000679732.1:ENST00000681183.1:ENST00000681534.1:ENST00000681651.1:ENST00000680089.1:ENST00000680078.1:ENST00000680974.1:ENST00000680095.1:ENST00000680015.1:ENST00000681138.1:ENST00000392185.8:ENST00000679790.1:ENST00000680495.1:ENST00000679691.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	88	2	2.34586	3.96854	5.59122	0.00631808	0.00247649	0.0722266	0.0446195
chr11	64828970	64829070	4965476	0	-	0.51	(0.476,0.515]	chr11	467626	1	SS5_PROX	SS5_PROX:INTRON	CDC42BPG	ENSG00000171219.9	ENST00000342711.6	protein_coding	protein_coding	protein_coding	protein_coding	1	46	2	2.9435	3.9684600000000003	4.99342	0.00929849	0.00139274	0.0817766	0.0341261
chr14	34871797	34871896	5868409	0	-	0.585859	(0.57,1]	chr14	557415	91	INTRON	INTRON	BAZ1A	ENSG00000198604.11	ENST00000358716.8:ENST00000360310.6:ENST00000382422.6	protein_coding	protein_coding	protein_coding	protein_coding	2	38	2	2.73474	3.968445	5.20215	0.00241874	8.28896e-5	0.0454275	0.00812487
chr6	167924409	167924504	3035340	0	+	0.6	(0.57,1]	chr6	282832	11	INTRON	INTRON	AFDN	ENSG00000130396.21	ENST00000683244.1:ENST00000351017.9:ENST00000344191.8:ENST00000392112.5:ENST00000392108.7:ENST00000400822.7:ENST00000447894.6:ENST00000366809.6:ENST00000366806.6:ENST00000511637.5:ENST00000485634.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	38	2	2.73474	3.968445	5.20215	0.00241874	8.28896e-5	0.0454275	0.00812487
chr3	142548599	142548694	1838673	0	-	0.452632	(0.44,0.476]	chr3	184898	3	INTRON	INTRON	ATR	ENSG00000175054.16	ENST00000350721.9:ENST00000656590.1:ENST00000661310.1:ENST00000653868.1:ENST00000656582.1:ENST00000515149.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	47	2	3.07862	3.968395	4.85817	0.0060153	0.00223254	0.0674604	0.0435144
chr8	28971217	28971317	3725668	0	+	0.46	(0.44,0.476]	chr8	346270	3	INTRON	INTRON	HMBOX1	ENSG00000147421.18	ENST00000287701.15:ENST00000558662.5:ENST00000397358.7:ENST00000560599.5:ENST00000523613.5:ENST00000521516.5:ENST00000519047.5:ENST00000355231.9:ENST00000524238.3:ENST00000518080.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	47	2	3.07862	3.968395	4.85817	0.0060153	0.00223254	0.0674604	0.0435144
chr10	138255	138355	4377804	0	+	0.53	(0.515,0.57]	chr10	403709	23	INTRON	INTRON	ZMYND11	ENSG00000015171.20	ENST00000397962.8:ENST00000439456.5:ENST00000309776.8:ENST00000397959.7:ENST00000509513.6:ENST00000381591.5:ENST00000381604.9:ENST00000602682.6:ENST00000381607.8:ENST00000403354.5:ENST00000627286.2:ENST00000402736.5:ENST00000397955.7	protein_coding	protein_coding	protein_coding	protein_coding	1	41	2	3.42644	3.9682199999999996	4.51	0.00809449	0.00106731	0.0766625	0.0300133
chr20	64017639	64017737	7301756	0	+	0.520408	(0.515,0.57]	chr20	743234	4	INTRON	INTRON	PRPF6	ENSG00000101161.8	ENST00000266079.5	protein_coding	protein_coding	protein_coding	protein_coding	1	40	2	2.83188	3.96818	5.10448	0.0108207	0.0010345	0.0920575	0.029231300000000002
chr2	113732416	113732506	1216576	0	-	0.355556	(0.35,0.378]	chr2	129494	4	INTRON	INTRON	SLC35F5	ENSG00000115084.15	ENST00000245680.7:ENST00000409106.5:ENST00000447673.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	46	2	3.21677	3.9681499999999996	4.71953	0.0103314	0.00313804	0.0850389	0.0514466
chr3	32554642	32554742	1649959	0	-	0.37	(0.35,0.378]	chr3	169157	83	INTRON	INTRON	DYNC1LI1	ENSG00000144635.9	ENST00000273130.9:ENST00000481915.5:ENST00000432458.6:ENST00000413350.5:ENST00000424991.1:ENST00000475193.1:ENST00000474077.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	46	2	3.21677	3.9681499999999996	4.71953	0.0103314	0.00313804	0.0850389	0.0514466
chr4	17824567	17824667	1927198	0	+	0.36	(0.35,0.378]	chr4	193751	2	SS3_PROX	SS3_PROX:INTRON	NCAPG	ENSG00000109805.10	ENST00000251496.7:ENST00000514176.5:ENST00000510063.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	46	2	3.21677	3.9681499999999996	4.71953	0.0103314	0.00313804	0.0850389	0.0514466
chr16	89895563	89895637	6422667	0	+	0.432432	(0.408,0.44]	chr16	616773	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TCF25	ENSG00000141002.20	ENST00000640279.1:ENST00000263347.11:ENST00000263346.13:ENST00000568412.5:ENST00000562256.5:ENST00000568409.5:ENST00000562184.5:ENST00000563636.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	47	2	3.00595	3.968095	4.93024	0.00781452	0.00170369	0.0759016	0.0381936
chr9	136091794	136091893	4373433	0	-	0.464646	(0.44,0.476]	chr9	402592	409	INTRON	INTRON	NACC2	ENSG00000148411.8	ENST00000277554.4	protein_coding	protein_coding	protein_coding	protein_coding	2	58	2	2.44514	3.9680549999999997	5.49097	0.0087381	4.8612e-4	0.0845538	0.0203841
chr9	131149823	131149886	4215872	0	+	0.444444	(0.44,0.476]	chr9	386573	1	SS3_PROX	SS3_PROX:INTRON	NUP214	ENSG00000126883.19	ENST00000695497.1:ENST00000695498.1:ENST00000695496.1:ENST00000695495.1:ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000651022.1:ENST00000525980.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	111	2	1.81246	3.967845	6.12323	0.00516266	2.60698e-5	0.0651248	0.0042231
chr1	99731041	99731140	514974	0	-	0.272727	[0,0.28]	chr1	60376	9	INTRON	INTRON	FRRS1	ENSG00000156869.14	ENST00000646001.2:ENST00000287474.9	protein_coding	protein_coding	protein_coding	protein_coding	3	183	2	3.27705	3.967775	4.6585	7.64243e-4	5.68659e-6	0.0253443	0.00165922
chr1	229507203	229507294	653323	0	-	0.274725	[0,0.28]	chr1	77411	7	INTRON	INTRON	NUP133	ENSG00000069248.12	ENST00000261396.6:ENST00000366678.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	59	2	2.73384	3.967275	5.20071	0.0246308	0.00261806	0.12011	0.0470772
chr2	135484244	135484343	1233031	0	-	0.262626	[0,0.28]	chr2	131237	931	INTRON	INTRON	ZRANB3	ENSG00000121988.18	ENST00000264159.11:ENST00000401392.5:ENST00000536680.5:ENST00000403017.2:ENST00000452187.6:ENST00000492193.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	59	2	2.73384	3.967275	5.20071	0.0246308	0.00261806	0.12011	0.0470772
chr15	68287820	68287919	6057520	0	+	0.424242	(0.408,0.44]	chr15	576653	72	INTRON	INTRON	FEM1B	ENSG00000169018.6	ENST00000306917.5:ENST00000570067.1	protein_coding	protein_coding	protein_coding	protein_coding	1	46	2	3.50731	3.96722	4.42713	0.0173083	8.5918e-4	0.104099	0.0265787
chr10	68519903	68520002	4640208	0	-	0.262626	[0,0.28]	chr10	426805	18	INTRON	INTRON	SLC25A16	ENSG00000122912.15	ENST00000609923.6:ENST00000493963.5:ENST00000491102.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	77	2	1.8986	3.96713	6.03566	0.0531512	5.43045e-4	0.179787	0.0215026
chr19	3756670	3756769	7118406	0	-	0.40404	(0.378,0.408]	chr19	715907	5	INTRON	INTRON	APBA3	ENSG00000011132.12	ENST00000316757.4:ENST00000590238.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	44	2	2.9917	3.9671	4.9425	0.0068789	0.00452675	0.0749442	0.0595107
chr6	85603701	85603800	3151046	0	-	0.50505	(0.476,0.515]	chr6	293857	97	INTRON	INTRON	ENSG00000271793	ENSG00000271793.2	ENST00000682083.1:ENST00000683074.1:ENST00000681965.1:ENST00000682504.1:ENST00000682106.1:ENST00000683364.1:ENST00000683436.1:ENST00000684220.1:ENST00000683909.1:ENST00000684462.1:ENST00000503906.1	protein_coding	retained_intron	protein_coding	retained_intron:nonsense_mediated_decay:processed_transcript	3	75	2	2.34867	3.96706	5.58545	0.00539703	1.04881e-4	0.0644048	0.00863456
chr22	21823239	21823339	7560942	0	-	0.45	(0.44,0.476]	chr22	773388	150	INTRON	INTRON	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	3	129	2	3.64027	3.96679	4.29331	4.59928e-5	1.36744e-5	0.00586921	0.00275994
chr20	6011598	6011696	7230603	0	+	0.581633	(0.57,1]	chr20	734835	13	INTRON	INTRON	CRLS1	ENSG00000088766.12	ENST00000452938.5:ENST00000378863.9:ENST00000378868.4:ENST00000609154.1:ENST00000489345.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	57	2	2.30813	3.96652	5.62491	0.00113374	6.73465e-6	0.0308663	0.00194394
chr17	80758992	80759092	6686935	0	+	0.58	(0.57,1]	chr17	653441	40	INTRON	INTRON	RPTOR	ENSG00000141564.15	ENST00000574767.5:ENST00000577161.5:ENST00000306801.8:ENST00000570891.5:ENST00000544334.6:ENST00000575542.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	29	2	3.22856	3.966415	4.70427	0.00205928	9.25341e-4	0.0420839	0.0278396
chr15	20437932	20438011	6118230	0	-	0.620253	(0.57,1]	chr15	582370	1	INTRON	INTRON	HERC2P3	ENSG00000180229.12	ENST00000426501.5:ENST00000428453.5:ENST00000437318.5:ENST00000430598.5:ENST00000429257.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	1	29	2	3.13254	3.9663250000000003	4.80011	0.00310655	6.07135e-4	0.0512344	0.0226059
chr18	13726028	13726128	6951858	0	-	0.59	(0.57,1]	chr18	687693	3	SS5_PROX	SS5_PROX:INTRON	FAM210A	ENSG00000177150.13	ENST00000322247.7:ENST00000651643.1:ENST00000402563.5:ENST00000585785.1:ENST00000588475.1:ENST00000592976.5:ENST00000591269.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	29	2	3.13254	3.9663250000000003	4.80011	0.00310655	6.07135e-4	0.0512344	0.0226059
chr16	67281184	67281284	6366890	0	+	0.46	(0.44,0.476]	chr16	611637	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PLEKHG4	ENSG00000196155.13	ENST00000360461.9:ENST00000563969.5:ENST00000427155.6:ENST00000379344.8:ENST00000450733.5:ENST00000393966.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	45	2	2.58033	3.9663	5.35227	0.0247511	8.47974e-4	0.131869	0.0267232
chr9	131734605	131734705	4363855	0	-	0.37	(0.35,0.378]	chr9	401281	250	INTRON	INTRON	RAPGEF1	ENSG00000107263.19	ENST00000372195.5:ENST00000372189.7:ENST00000683357.1:ENST00000438647.3	protein_coding	protein_coding	protein_coding	protein_coding	1	49	2	2.72497	3.9661999999999997	5.20743	0.0198266	7.78116e-4	0.109608	0.0256531
chr10	102155023	102155122	4512527	0	+	0.464646	(0.44,0.476]	chr10	415623	21	INTRON	INTRON	NOLC1	ENSG00000166197.17	ENST00000405356.5:ENST00000605788.6:ENST00000464969.6:ENST00000603946.5:ENST00000488254.6:ENST00000461421.5:ENST00000476468.5:ENST00000370007.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	63	2	2.63508	3.9661549999999997	5.29723	0.00501007	3.83422e-4	0.0618077	0.017699199999999998
chr10	72614225	72614325	4646813	0	-	0.39	(0.378,0.408]	chr10	427462	471	INTRON	INTRON	MICU1	ENSG00000107745.20	ENST00000361114.10:ENST00000642044.1:ENST00000635239.1:ENST00000604238.2:ENST00000603011.5:ENST00000604025.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	59	2	2.70298	3.96611	5.22924	0.00325723	0.00172721	0.0524329	0.0374701
chr14	28830235	28830324	5668923	0	+	0.561798	(0.515,0.57]	chr14	540303	5	EXON_LNCRNA	EXON_LNCRNA	LINC02327	ENSG00000258038.6	ENST00000671154.1:ENST00000656401.1:ENST00000657120.1:ENST00000551588.6:ENST00000658814.1:ENST00000657083.1:ENST00000550827.5:ENST00000660501.1:ENST00000548775.2:ENST00000548087.5:ENST00000550122.5:ENST00000655423.1:ENST00000670211.1:ENST00000664085.1:ENST00000667065.1	lncRNA	lncRNA	lncRNA	lncRNA	3	63	2	2.45375	3.96587	5.47799	0.00273605	2.09356e-4	0.0483437	0.0131276
chr3	138296091	138296191	1515066	0	+	0.35	(0.32,0.35]	chr3	158417	3	UTR3	UTR3:EXON_MRNA	ARMC8	ENSG00000114098.18	ENST00000538260.5:ENST00000481646.5:ENST00000469044.6:ENST00000491704.5:ENST00000461822.5:ENST00000460495.5:ENST00000466762.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	110	2	3.92708	3.965855	4.00463	2.71709e-4	9.86358e-5	0.0151189	0.00835539
chr7	140819386	140819486	3662675	0	-	0.38	(0.378,0.408]	chr7	340085	100	INTRON	INTRON	BRAF	ENSG00000157764.14	ENST00000496384.7:ENST00000644969.2:ENST00000644120.1:ENST00000646891.1:ENST00000644905.1:ENST00000642228.1:ENST00000288602.11:ENST00000646730.1:ENST00000497784.2:ENST00000642272.1:ENST00000642808.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	44	2	3.05393	3.965775	4.87762	0.00553849	0.00551532	0.0672816	0.0648867
chr5	139596165	139596265	2500852	0	+	0.38	(0.378,0.408]	chr5	239026	334	INTRON	INTRON	UBE2D2	ENSG00000131508.16	ENST00000511725.5:ENST00000505007.5:ENST00000398733.8:ENST00000510470.1:ENST00000398734.8:ENST00000505548.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	44	2	2.92665	3.9656200000000004	5.00459	0.0086017	0.00371142	0.083729	0.0535094
chr1	110361204	110361303	182563	0	+	0.292929	(0.28,0.32]	chr1	20257	48	INTRON	INTRON	LAMTOR5-AS1	ENSG00000224699.10	ENST00000626572.2	lncRNA	lncRNA	lncRNA	lncRNA	1	54	2	2.67975	3.96558	5.25141	0.0252505	0.00125199	0.12011	0.0328543
chr14	30580170	30580266	5674597	0	+	0.354167	(0.35,0.378]	chr14	540507	20	INTRON	INTRON	G2E3	ENSG00000092140.16	ENST00000206595.11:ENST00000438909.6:ENST00000544007.5:ENST00000550944.5:ENST00000552488.1:ENST00000648008.1:ENST00000553504.5:ENST00000554714.5:ENST00000547532.5:ENST00000555429.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	61	2	2.72093	3.965555	5.21018	0.00314173	0.00228003	0.0514466	0.0426265
chr15	40743349	40743447	6151238	0	-	0.418367	(0.408,0.44]	chr15	585114	28	INTRON	INTRON	RMDN3	ENSG00000137824.16	ENST00000260385.10:ENST00000338376.8:ENST00000558777.5:ENST00000558232.5:ENST00000560779.5:ENST00000558560.1:ENST00000560460.5:ENST00000558364.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	58	2	2.44674	3.96545	5.48416	0.00868283	5.43528e-4	0.0842798	0.0215026
chr2	235503841	235503941	1041433	0	+	0.5	(0.476,0.515]	chr2	111217	86	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	177	2	3.23818	3.96513	4.69208	2.54589e-5	1.09059e-6	0.00416607	5.99786e-4
chr2	73217679	73217776	808187	0	+	0.484536	(0.476,0.515]	chr2	90361	26	INTRON	INTRON	SMYD5	ENSG00000135632.12	ENST00000413491.5:ENST00000258100.8:ENST00000389501.9:ENST00000629411.2:ENST00000443900.1:ENST00000474652.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	89	2	1.77073	3.964945	6.15916	0.0151174	1.89343e-5	0.108513	0.00354138
chr1	184876145	184876245	602064	0	-	0.34	(0.32,0.35]	chr1	71746	77	INTRON	INTRON	NIBAN1	ENSG00000135842.17	ENST00000367511.4	protein_coding	protein_coding	protein_coding	protein_coding	4	91	2	2.50667	3.96486	5.42305	0.00149027	0.00118337	0.035	0.031662
chr1	52054201	52054300	456486	0	-	0.383838	(0.378,0.408]	chr1	54719	123	INTRON	INTRON	TXNDC12	ENSG00000117862.13	ENST00000371626.9:ENST00000472624.5:ENST00000610127.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	21	2	3.82294	3.964775	4.10661	0.044228	0.0399023	0.162255	0.143072
chr10	826906	827000	4541520	0	-	0.382979	(0.378,0.408]	chr10	419228	12	EXON_MRNA	EXON_MRNA:INTRON	LARP4B	ENSG00000107929.16	ENST00000688365.1:ENST00000316157.8:ENST00000690516.1:ENST00000689323.1:ENST00000688042.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	21	2	3.82294	3.964775	4.10661	0.044228	0.0399023	0.162255	0.143072
chr11	67249048	67249138	4813771	0	+	0.388889	(0.378,0.408]	chr11	448207	3	INTRON	INTRON	KDM2A	ENSG00000173120.15	ENST00000529006.7:ENST00000398645.6:ENST00000308783.9:ENST00000526258.5:ENST00000531696.5:ENST00000530342.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	21	2	3.82294	3.964775	4.10661	0.044228	0.0399023	0.162255	0.143072
chr11	86000142	86000242	5014135	0	-	0.38	(0.378,0.408]	chr11	472954	1	SS5_PROX	SS5_PROX:INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000630913.2:ENST00000529760.5:ENST00000528398.5:ENST00000356360.9:ENST00000529016.5:ENST00000530542.1	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	3.82294	3.964775	4.10661	0.044228	0.0399023	0.162255	0.143072
chr11	110281940	110282039	5041188	0	-	0.383838	(0.378,0.408]	chr11	474747	18	INTRON	INTRON	RDX	ENSG00000137710.17	ENST00000645527.1:ENST00000530749.5:ENST00000528498.5:ENST00000528900.5:ENST00000530301.5:ENST00000647231.1:ENST00000646663.1:ENST00000645495.2:ENST00000544551.5:ENST00000530131.5:ENST00000534683.1:ENST00000532118.5:ENST00000528556.5:ENST00000533991.1:ENST00000533678.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	21	2	3.82294	3.964775	4.10661	0.044228	0.0399023	0.162255	0.143072
chr11	129868220	129868317	5051593	0	-	0.391753	(0.378,0.408]	chr11	476662	19	INTRON	INTRON	NFRKB	ENSG00000170322.15	ENST00000682444.1:ENST00000446488.7:ENST00000524794.5:ENST00000524746.5	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	3.82294	3.964775	4.10661	0.044228	0.0399023	0.162255	0.143072
chr15	59006768	59006867	6039074	0	+	0.40404	(0.378,0.408]	chr15	574979	22	INTRON	INTRON	RNF111	ENSG00000157450.16	ENST00000559757.1:ENST00000348370.9:ENST00000559160.1:ENST00000559209.5:ENST00000557998.5	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	3.82294	3.964775	4.10661	0.044228	0.0399023	0.162255	0.143072
chr16	3287661	3287758	6281313	0	+	0.402062	(0.378,0.408]	chr16	601129	9	INTRON	INTRON	ZNF263	ENSG00000006194.10	ENST00000538765.2:ENST00000219069.6:ENST00000574253.1:ENST00000575823.1	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	3.82294	3.964775	4.10661	0.044228	0.0399023	0.162255	0.143072
chr16	75431088	75431188	6529281	0	-	0.4	(0.378,0.408]	chr16	632359	115	INTRON	INTRON	CFDP1	ENSG00000153774.9	ENST00000283882.4:ENST00000566901.5:ENST00000565646.5:ENST00000564286.1:ENST00000566254.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	21	2	3.82294	3.964775	4.10661	0.044228	0.0399023	0.162255	0.143072
chr16	84088539	84088635	6531913	0	-	0.385417	(0.378,0.408]	chr16	632892	7	INTRON	INTRON	MBTPS1	ENSG00000140943.18	ENST00000343411.8:ENST00000569770.5:ENST00000563231.5:ENST00000565863.1:ENST00000570012.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	21	2	3.82294	3.964775	4.10661	0.044228	0.0399023	0.162255	0.143072
chr17	37195987	37196085	6760884	0	-	0.397959	(0.378,0.408]	chr17	664739	22	INTRON	INTRON	ACACA	ENSG00000278540.5	ENST00000616317.5:ENST00000614428.4:ENST00000612895.4:ENST00000619546.4:ENST00000617649.4	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	3.82294	3.964775	4.10661	0.044228	0.0399023	0.162255	0.143072
chr17	51186403	51186502	6797112	0	-	0.40404	(0.378,0.408]	chr17	671037	1	INTRON	INTRON	MBTD1	ENSG00000011258.16	ENST00000586178.6:ENST00000415868.5	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	3.82294	3.964775	4.10661	0.044228	0.0399023	0.162255	0.143072
chr2	36567397	36567497	1092496	0	-	0.4	(0.378,0.408]	chr2	117077	60	INTRON	INTRON	FEZ2	ENSG00000171055.15	ENST00000414288.5:ENST00000379245.8:ENST00000405912.8:ENST00000413938.5:ENST00000441005.5:ENST00000305852.11:ENST00000451623.5:ENST00000487282.5:ENST00000464964.1:ENST00000357996.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	21	2	3.82294	3.964775	4.10661	0.044228	0.0399023	0.162255	0.143072
chr2	105366169	105366269	1200575	0	-	0.38	(0.378,0.408]	chr2	128315	23	INTRON	INTRON	FHL2	ENSG00000115641.19	ENST00000409177.6:ENST00000322142.13:ENST00000393352.7:ENST00000344213.9:ENST00000530340.6:ENST00000393353.7:ENST00000358129.8:ENST00000409807.5:ENST00000408995.5:ENST00000452732.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	21	2	3.82294	3.964775	4.10661	0.044228	0.0399023	0.162255	0.143072
chr20	3476312	3476412	7224490	0	+	0.39	(0.378,0.408]	chr20	734142	44	INTRON	INTRON	ATRN	ENSG00000088812.18	ENST00000262919.10:ENST00000446916.2	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	3.82294	3.964775	4.10661	0.044228	0.0399023	0.162255	0.143072
chr22	19051424	19051524	7551292	0	-	0.39	(0.378,0.408]	chr22	771857	24	INTRON	INTRON	DGCR2	ENSG00000070413.20	ENST00000537045.5:ENST00000545799.5:ENST00000263196.12:ENST00000389262.8:ENST00000467659.1:ENST00000608548.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	21	2	3.82294	3.964775	4.10661	0.044228	0.0399023	0.162255	0.143072
chr3	37160946	37161046	1656481	0	-	0.38	(0.378,0.408]	chr3	170022	59	INTRON	INTRON	LRRFIP2	ENSG00000093167.18	ENST00000336686.9:ENST00000354379.8:ENST00000421276.6:ENST00000396428.6:ENST00000440230.5:ENST00000416425.5:ENST00000461672.5:ENST00000438374.5:ENST00000452742.5:ENST00000436858.5:ENST00000434749.5:ENST00000482466.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	21	2	3.82294	3.964775	4.10661	0.044228	0.0399023	0.162255	0.143072
chr5	10408960	10409057	2318221	0	+	0.381443	(0.378,0.408]	chr5	224702	14	INTRON	INTRON	MARCHF6	ENSG00000145495.16	ENST00000274140.10:ENST00000449913.6:ENST00000511802.5:ENST00000503788.5:ENST00000510792.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	21	2	3.82294	3.964775	4.10661	0.044228	0.0399023	0.162255	0.143072
chr5	80469068	80469168	2400166	0	+	0.4	(0.378,0.408]	chr5	231878	92	INTRON	INTRON	ZFYVE16	ENSG00000039319.17	ENST00000338008.9:ENST00000510158.5:ENST00000505560.5:ENST00000511829.5:ENST00000512907.5:ENST00000513789.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	21	2	3.82294	3.964775	4.10661	0.044228	0.0399023	0.162255	0.143072
chr5	97243370	97243470	2437408	0	+	0.4	(0.378,0.408]	chr5	234111	274	INTRON	INTRON	LIX1-AS1	ENSG00000251513.2	ENST00000504578.2	lncRNA	lncRNA	lncRNA	lncRNA	0	21	2	3.82294	3.964775	4.10661	0.044228	0.0399023	0.162255	0.143072
chr5	154818683	154818779	2756076	0	-	0.40625	(0.378,0.408]	chr5	259922	3	UTR3	UTR3:EXON_MRNA	FAXDC2	ENSG00000170271.11	ENST00000326080.10:ENST00000423554.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	21	2	3.82294	3.964775	4.10661	0.044228	0.0399023	0.162255	0.143072
chr6	17608266	17608339	2826700	0	+	0.383562	(0.378,0.408]	chr6	265437	2	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	FAM8A1	ENSG00000137414.7	ENST00000259963.4:ENST00000688732.1:ENST00000690940.1:ENST00000691422.1:ENST00000685064.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	21	2	3.82294	3.964775	4.10661	0.044228	0.0399023	0.162255	0.143072
chr6	150224053	150224153	2997587	0	+	0.38	(0.378,0.408]	chr6	280455	68	INTRON	INTRON	PPP1R14C	ENSG00000198729.5	ENST00000361131.5	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	3.82294	3.964775	4.10661	0.044228	0.0399023	0.162255	0.143072
chr8	41964579	41964624	3940422	0	-	0.4	(0.378,0.408]	chr8	361183	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:INTRON	KAT6A	ENSG00000083168.11	ENST00000406337.6:ENST00000265713.8:ENST00000396930.4:ENST00000649817.1:ENST00000648335.1:ENST00000649827.1:ENST00000485568.5:ENST00000647809.1:ENST00000647746.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	21	2	3.82294	3.964775	4.10661	0.044228	0.0399023	0.162255	0.143072
chr8	42154687	42154787	3742749	0	+	0.39	(0.378,0.408]	chr8	348000	1	CDS_START	CDS_START:CDS:EXON_MRNA:INTRON	AP3M2	ENSG00000070718.12	ENST00000174653.3:ENST00000518421.5:ENST00000517865.5:ENST00000520685.1:ENST00000396926.8:ENST00000521280.5:ENST00000530375.5:ENST00000522288.5:ENST00000517969.1:ENST00000517922.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	21	2	3.82294	3.964775	4.10661	0.044228	0.0399023	0.162255	0.143072
chr8	116700135	116700235	4033670	0	-	0.38	(0.378,0.408]	chr8	368058	25	INTRON	INTRON	EIF3H	ENSG00000147677.12	ENST00000521861.6:ENST00000276682.8:ENST00000518949.5:ENST00000518995.5:ENST00000522800.5:ENST00000518034.5:ENST00000517974.1:ENST00000522453.1:ENST00000519046.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	21	2	3.82294	3.964775	4.10661	0.044228	0.0399023	0.162255	0.143072
chr9	72244450	72244548	4142234	0	+	0.397959	(0.378,0.408]	chr9	377491	28	INTRON	INTRON	GDA	ENSG00000119125.17	ENST00000545168.5:ENST00000238018.8:ENST00000358399.8:ENST00000376986.5:ENST00000475764.5:ENST00000489618.5:ENST00000436438.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	21	2	3.82294	3.964775	4.10661	0.044228	0.0399023	0.162255	0.143072
chr9	109098559	109098658	4312389	0	-	0.393939	(0.378,0.408]	chr9	396380	46	INTRON	INTRON	TMEM245	ENSG00000106771.13	ENST00000374586.8:ENST00000491854.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	21	2	3.82294	3.964775	4.10661	0.044228	0.0399023	0.162255	0.143072
chr5	139569199	139569298	2500582	0	+	0.292929	(0.28,0.32]	chr5	239026	64	INTRON	INTRON	UBE2D2	ENSG00000131508.16	ENST00000511725.5:ENST00000505007.5:ENST00000398733.8:ENST00000510470.1:ENST00000398734.8:ENST00000505548.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	54	2	2.62686	3.964695	5.30253	0.0289217	0.0010319	0.1274	0.0294094
chr1	244437968	244438068	672705	0	-	0.31	(0.28,0.32]	chr1	79579	2	SS3_PROX	SS3_PROX:INTRON	ADSS2	ENSG00000035687.10	ENST00000366535.4	protein_coding	protein_coding	protein_coding	protein_coding	1	50	2	3.1268	3.9646749999999997	4.80255	0.0137406	0.00508956	0.0949306	0.0646039
chr7	77705839	77705939	3343163	0	+	0.32	(0.28,0.32]	chr7	311432	81	INTRON	INTRON	RSBN1L	ENSG00000187257.16	ENST00000334955.13:ENST00000445288.5	protein_coding	protein_coding	protein_coding	protein_coding	1	50	2	3.1268	3.9646749999999997	4.80255	0.0137406	0.00508956	0.0949306	0.0646039
chr8	102350885	102350985	4012133	0	-	0.32	(0.28,0.32]	chr8	367218	34	INTRON	INTRON	UBR5	ENSG00000104517.13	ENST00000520539.6:ENST00000220959.8:ENST00000521922.5	protein_coding	protein_coding	protein_coding	protein_coding	1	50	2	3.1268	3.9646749999999997	4.80255	0.0137406	0.00508956	0.0949306	0.0646039
chr1	144903994	144904093	537864	0	-	0.424242	(0.408,0.44]	chr1	63276	63	INTRON	INTRON	SRGAP2B	ENSG00000196369.12	ENST00000612199.4:ENST00000641863.3:ENST00000619678.2:ENST00000621582.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	45	2	3.41323	3.9646350000000004	4.51604	0.0137419	0.00129989	0.0949306	0.0333764
chr17	1487890	1487988	6700331	0	-	0.602041	(0.57,1]	chr17	655731	4	INTRON	INTRON	MYO1C	ENSG00000197879.17	ENST00000648651.1:ENST00000361007.7:ENST00000646049.1:ENST00000570984.7:ENST00000575335.5	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	2.79889	3.96455	5.13021	0.0110274	1.21664e-4	0.0927187	0.00992813
chr5	138363279	138363379	2494957	0	+	0.3	(0.28,0.32]	chr5	238471	99	INTRON	INTRON	KDM3B	ENSG00000120733.14	ENST00000314358.10	protein_coding	protein_coding	protein_coding	protein_coding	1	51	2	3.26551	3.96455	4.66359	0.0193496	0.0030714	0.108861	0.0509893
chr1	8797478	8797577	373583	0	-	0.323232	(0.32,0.35]	chr1	43555	45	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000656437.1:ENST00000659924.1	protein_coding	protein_coding	protein_coding	protein_coding	3	76	2	2.3011	3.964525	5.62795	0.00617969	7.01392e-4	0.0713552	0.024224
chr20	63919048	63919148	7301199	0	+	0.34	(0.32,0.35]	chr20	743138	2	PRIMIRNA	PRIMIRNA:INTRON	DNAJC5:MIR941-1	ENSG00000101152.11:ENSG00000283206.1	ENST00000360864.9:ENST00000470551.1:ENST00000636396.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:nonsense_mediated_decay:primary_miRNA	3	76	2	2.22655	3.964475	5.7024	0.00823133	5.25722e-4	0.0812969	0.0210958
chr1	3784986	3785086	363919	0	-	0.51	(0.476,0.515]	chr1	42623	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	LRRC47	ENSG00000130764.10	ENST00000378251.3	protein_coding	protein_coding	protein_coding	protein_coding	2	62	2	2.21677	3.96446	5.71215	0.0207026	5.54639e-5	0.110999	0.00609037
chr11	17148028	17148128	4928474	0	-	0.5	(0.476,0.515]	chr11	461465	4	SS3_PROX	SS3_PROX:SS5_PROX:INTRON	PIK3C2A	ENSG00000011405.14	ENST00000531428.1:ENST00000265970.11:ENST00000691414.1:ENST00000533645.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	47	2	3.58243	3.964455	4.34648	0.0193566	6.18479e-4	0.108861	0.0223951
chr7	92723132	92723232	3572124	0	-	0.41	(0.408,0.44]	chr7	332798	215	INTRON	INTRON	CDK6	ENSG00000105810.10	ENST00000424848.3:ENST00000265734.8:ENST00000473078.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	64	2	2.68622	3.9644450000000004	5.24267	0.00418848	4.83767e-4	0.0572071	0.0199261
chr3	185666568	185666668	1884751	0	-	0.37	(0.35,0.378]	chr3	188520	78	INTRON	INTRON	IGF2BP2	ENSG00000073792.16	ENST00000382199.7:ENST00000346192.7:ENST00000457616.6:ENST00000421047.3:ENST00000494906.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	47	2	2.57049	3.964385	5.35828	0.0262669	0.00135282	0.133676	0.0336321
chr5	88204265	88204364	2669083	0	-	0.363636	(0.35,0.378]	chr5	252638	8	INTRON	INTRON	TMEM161B	ENSG00000164180.14	ENST00000514135.5:ENST00000296595.11:ENST00000511087.5:ENST00000510089.5:ENST00000506536.5:ENST00000511218.5:ENST00000512429.5:ENST00000507872.1:ENST00000509387.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	47	2	2.57049	3.964385	5.35828	0.0262669	0.00135282	0.133676	0.0336321
chr6	98889596	98889696	3164997	0	-	0.47	(0.44,0.476]	chr6	295187	86	INTRON	INTRON	FBXL4	ENSG00000112234.9	ENST00000369244.7:ENST00000229971.2	protein_coding	protein_coding	protein_coding	protein_coding	2	62	2	2.42996	3.9643699999999997	5.49878	0.0104804	1.52058e-4	0.0855777	0.0106137
chr9	137807800	137807899	4225416	0	+	0.484848	(0.476,0.515]	chr9	388373	41	INTRON	INTRON	EHMT1	ENSG00000181090.21	ENST00000460843.6:ENST00000636027.1:ENST00000637161.1:ENST00000637261.1:ENST00000462942.3:ENST00000637891.1:ENST00000637949.1:ENST00000486164.5:ENST00000488242.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	45	2	2.56868	3.964315	5.35995	0.0256676	7.54256e-4	0.133676	0.0251179
chr15	64358750	64358849	6204859	0	-	0.444444	(0.44,0.476]	chr15	591782	27	INTRON	INTRON	ENSG00000259316	ENSG00000259316.12	ENST00000634251.1:ENST00000634847.3:ENST00000634318.1:ENST00000635160.1:ENST00000635704.1:ENST00000634529.1:ENST00000635511.1:ENST00000635605.1:ENST00000635593.1:ENST00000634259.2:ENST00000560278.2:ENST00000635413.1:ENST00000634538.1:ENST00000635320.1:ENST00000558783.2	protein_coding	retained_intron	protein_coding	retained_intron:nonsense_mediated_decay:processed_transcript	1	46	2	2.80275	3.96394	5.12513	0.0146513	7.96486e-4	0.0982604	0.0258804
chr1	110347987	110348087	182430	0	+	0.29	(0.28,0.32]	chr1	20250	1	SS5_PROX	SS5_PROX:INTRON	LAMTOR5-AS1	ENSG00000224699.10	ENST00000626572.2	lncRNA	lncRNA	lncRNA	lncRNA	1	51	2	2.53522	3.963785	5.39235	0.0310424	0.0024844	0.143457	0.0446195
chr2	177346352	177346450	1276688	0	-	0.285714	(0.28,0.32]	chr2	134788	5	INTRON	INTRON	NFE2L2:ENSG00000213963	ENSG00000116044.16:ENSG00000213963.6	ENST00000464747.5:ENST00000397057.6:ENST00000456746.5:ENST00000447413.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	1	51	2	2.53522	3.963785	5.39235	0.0310424	0.0024844	0.143457	0.0446195
chr6	28915790	28915887	3075518	0	-	0.309278	(0.28,0.32]	chr6	285946	1	INTRON	INTRON	TRIM27	ENSG00000204713.11	ENST00000377194.7:ENST00000377199.4:ENST00000481474.5:ENST00000498117.1:ENST00000496091.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	55	2	2.39347	3.9637450000000003	5.53402	0.0504457	4.0843e-4	0.156383	0.0181306
chr7	139287659	139287758	3437165	0	+	0.282828	(0.28,0.32]	chr7	320271	27	INTRON	INTRON	UBN2	ENSG00000157741.15	ENST00000473989.8	protein_coding	protein_coding	protein_coding	protein_coding	1	55	2	2.39347	3.9637450000000003	5.53402	0.0504457	4.0843e-4	0.156383	0.0181306
chr19	21728489	21728588	7158907	0	-	0.333333	(0.32,0.35]	chr19	723706	1	INTRON	INTRON	ZNF100	ENSG00000197020.12	ENST00000358296.11:ENST00000305570.10:ENST00000594401.1	protein_coding	protein_coding	protein_coding	protein_coding	1	47	2	2.96746	3.963585	4.95971	0.00815799	0.00663522	0.0810802	0.0703181
chrX	101043855	101043955	7855202	0	-	0.34	(0.32,0.35]	chrX	800834	2	SS3_PROX	SS3_PROX:INTRON	TRMT2B:TRMT2B-AS1	ENSG00000188917.15:ENSG00000225839.2	ENST00000545398.5:ENST00000372936.4:ENST00000372939.5:ENST00000372935.5:ENST00000478422.1:ENST00000443801.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA:processed_transcript	1	47	2	2.96746	3.963585	4.95971	0.00815799	0.00663522	0.0810802	0.0703181
chr22	39318692	39318770	7589800	0	-	0.474359	(0.44,0.476]	chr22	777104	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPL3	ENSG00000100316.16	ENST00000216146.9:ENST00000465618.5:ENST00000402527.5:ENST00000453303.5:ENST00000427905.5:ENST00000420536.1:ENST00000484615.5:ENST00000460589.5:ENST00000461967.1:ENST00000498462.1:ENST00000459859.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	73	2	3.2235	3.9635249999999997	4.70355	0.00383786	3.98783e-4	0.0562562	0.0185763
chr13	39031931	39032031	5576149	0	-	0.33	(0.32,0.35]	chr13	533086	3	SS3_PROX	SS3_PROX:INTRON	PROSER1	ENSG00000120685.20	ENST00000352251.8:ENST00000625998.2:ENST00000418503.1:ENST00000602534.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	47	2	2.90786	3.963515	5.01917	0.00993008	0.0055659	0.0877296	0.0648867
chr1	71077859	71077956	482996	0	-	0.247423	[0,0.28]	chr1	57878	6	INTRON	INTRON	ZRANB2	ENSG00000132485.14	ENST00000370920.8:ENST00000254821.10:ENST00000611683.1	protein_coding	protein_coding	protein_coding	protein_coding	2	72	2	2.41169	3.963285	5.51488	0.0122872	0.00314116	0.0970106	0.0500389
chr6	34387663	34387763	3084724	0	-	0.21	[0,0.28]	chr6	288633	453	INTRON	INTRON	NUDT3:RPS10-NUDT3	ENSG00000272325.2:ENSG00000270800.3	ENST00000607016.2:ENST00000639725.1:ENST00000639877.1:ENST00000605528.2	protein_coding	protein_coding	protein_coding	protein_coding	2	72	2	2.41169	3.963285	5.51488	0.0122872	0.00314116	0.0970106	0.0500389
chr6	85629493	85629592	3151312	0	-	0.414141	(0.408,0.44]	chr6	293889	50	INTRON	INTRON	ENSG00000271793:SYNCRIP	ENSG00000271793.2:ENSG00000135316.19	ENST00000682083.1:ENST00000683074.1:ENST00000681965.1:ENST00000682504.1:ENST00000682106.1:ENST00000683364.1:ENST00000683436.1:ENST00000684220.1:ENST00000683909.1:ENST00000684462.1:ENST00000616122.5:ENST00000678528.1:ENST00000676637.1:ENST00000677771.1:ENST00000355238.11:ENST00000678878.1:ENST00000677481.1:ENST00000677646.1:ENST00000676630.1:ENST00000678618.1:ENST00000676542.1:ENST00000677059.1:ENST00000444272.2:ENST00000678899.1:ENST00000369622.8:ENST00000678355.1:ENST00000676688.1:ENST00000677514.1:ENST00000678816.1:ENST00000678930.1:ENST00000678589.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	99	2	3.41144	3.96303	4.51462	0.00178336	3.40705e-6	0.0379201	0.00120209
chr21	28931969	28932069	7436052	0	-	0.34	(0.32,0.35]	chr21	758282	1	SS5_PROX	SS5_PROX:INTRON	LTN1	ENSG00000198862.14	ENST00000614971.4:ENST00000389194.7:ENST00000361371.10	protein_coding	protein_coding	protein_coding	protein_coding	1	52	2	2.99125	3.9627499999999998	4.93425	0.00958447	0.00281048	0.0820838	0.0488779
chr5	32590765	32590864	2334804	0	+	0.464646	(0.44,0.476]	chr5	225358	18	INTRON	INTRON	SUB1	ENSG00000113387.12	ENST00000506237.5:ENST00000512913.5:ENST00000513013.5:ENST00000265073.9:ENST00000511615.5:ENST00000515355.5:ENST00000502897.5:ENST00000510442.1:ENST00000504789.5:ENST00000511988.5:ENST00000504016.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	46	2	2.74063	3.96272	5.18481	0.0176095	6.21872e-4	0.105143	0.0223951
chrX	24753875	24753974	7632315	0	+	0.464646	(0.44,0.476]	chrX	781725	45	INTRON	INTRON	POLA1	ENSG00000101868.13	ENST00000672178.1:ENST00000379068.8:ENST00000379059.7:ENST00000611764.2:ENST00000480125.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	46	2	2.86231	3.962595	5.06288	0.012214	0.00102416	0.0910127	0.0294041
chr22	47743402	47743502	7540488	0	+	0.42	(0.408,0.44]	chr22	770742	44	INTRON	INTRON	ENSG00000224271	ENSG00000224271.7	ENST00000664761.1:ENST00000650683.1:ENST00000651536.1:ENST00000652656.1:ENST00000652072.1:ENST00000651445.1:ENST00000423737.5:ENST00000650660.1:ENST00000651056.1:ENST00000652611.1:ENST00000652399.1:ENST00000652123.1:ENST00000651311.1:ENST00000652505.1:ENST00000652702.2:ENST00000652030.2:ENST00000651403.1:ENST00000652228.1:ENST00000651124.1:ENST00000650972.1:ENST00000651985.1:ENST00000651637.1:ENST00000650924.1:ENST00000651003.1:ENST00000651948.2:ENST00000651293.1:ENST00000651939.1:ENST00000650787.1:ENST00000651517.1:ENST00000651662.1:ENST00000651638.1:ENST00000670853.1:ENST00000652080.1:ENST00000651294.1:ENST00000652164.1:ENST00000651538.1:ENST00000651033.1:ENST00000651584.1	lncRNA	lncRNA	lncRNA	lncRNA	2	59	2	2.27464	3.9625700000000004	5.6505	0.0158016	2.70553e-4	0.109464	0.0150813
chr14	73087700	73087800	5784377	0	+	0.3	(0.28,0.32]	chr14	547846	3	SS3_PROX	SS3_PROX:INTRON	RBM25	ENSG00000119707.14	ENST00000527432.5:ENST00000531500.5:ENST00000261973.12:ENST00000532683.5:ENST00000525321.5:ENST00000526754.5:ENST00000528081.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	69	2	2.87934	3.962565	5.04579	0.00714672	0.00189034	0.0723634	0.0402736
chr1	183493548	183493648	273718	0	+	0.46	(0.44,0.476]	chr1	32019	193	INTRON	INTRON	SMG7	ENSG00000116698.22	ENST00000440812.7:ENST00000367537.7:ENST00000688051.1:ENST00000685780.1:ENST00000508461.5:ENST00000347615.6:ENST00000419169.5:ENST00000444547.6:ENST00000507469.5:ENST00000515829.6:ENST00000367538.1:ENST00000502375.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	58	2	2.78129	3.962535	5.14378	0.00229634	0.00184943	0.0439319	0.0388609
chr7	66882469	66882548	3326225	0	+	0.468354	(0.44,0.476]	chr7	309324	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GTF2IP23	ENSG00000230295.1	ENST00000423746.1	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	2	58	2	2.78129	3.962535	5.14378	0.00229634	0.00184943	0.0439319	0.0388609
chr3	183748216	183748314	1580801	0	+	0.55102	(0.515,0.57]	chr3	163068	1	INTRON	INTRON	YEATS2	ENSG00000163872.16	ENST00000305135.10	protein_coding	protein_coding	protein_coding	protein_coding	3	109	2	3.61055	3.962505	4.31446	2.42273e-5	1.36228e-5	0.00385018	0.00292224
chr15	73589299	73589397	6220734	0	-	0.387755	(0.378,0.408]	chr15	593900	13	INTRON	INTRON	NPTN	ENSG00000156642.17	ENST00000351217.10:ENST00000345330.9:ENST00000565325.5:ENST00000562924.5:ENST00000563691.5:ENST00000565282.5:ENST00000564551.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	48	2	2.53503	3.962255	5.38948	0.0319942	2.85992e-4	0.13174	0.0150568
chr2	101265247	101265347	835991	0	+	0.5	(0.476,0.515]	chr2	93871	2	SS5_PROX	SS5_PROX:INTRON	CNOT11	ENSG00000158435.8	ENST00000289382.8:ENST00000462489.1:ENST00000420107.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	46	2	2.63168	3.9622450000000002	5.29281	0.0237106	4.07635e-4	0.118716	0.0181306
chr22	36335903	36336002	7584942	0	-	0.494949	(0.476,0.515]	chr22	776215	71	INTRON	INTRON	MYH9	ENSG00000100345.23	ENST00000216181.11:ENST00000685801.1:ENST00000692930.1:ENST00000685187.1:ENST00000691687.1:ENST00000685191.1:ENST00000688137.1:ENST00000401701.1:ENST00000691296.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	46	2	2.63168	3.9622450000000002	5.29281	0.0237106	4.07635e-4	0.118716	0.0181306
chr20	63196215	63196313	7362579	0	-	0.244898	[0,0.28]	chr20	751220	9	UTR3	UTR3:EXON_MRNA	YTHDF1	ENSG00000149658.18	ENST00000370339.8	protein_coding	protein_coding	protein_coding	protein_coding	4	100	2	2.0939	3.9621950000000004	5.83049	0.00875794	0.00112548	0.0846118	0.0306963
chr16	89789319	89789418	6544531	0	-	0.565657	(0.515,0.57]	chr16	634547	38	INTRON	INTRON	FANCA	ENSG00000187741.16	ENST00000561667.2:ENST00000389301.8:ENST00000568369.6:ENST00000564475.6:ENST00000696275.1:ENST00000696287.1:ENST00000696286.1:ENST00000696274.1:ENST00000696291.1:ENST00000696276.1:ENST00000567205.2:ENST00000567284.7:ENST00000696277.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	55	2	2.1885	3.96206	5.73562	0.0202537	6.01042e-5	0.121364	0.00680853
chr1	227055079	227055179	649060	0	-	0.3	(0.28,0.32]	chr1	76978	27	INTRON	INTRON	CDC42BPA	ENSG00000143776.20	ENST00000366766.8:ENST00000366769.7:ENST00000334218.9:ENST00000366767.7:ENST00000448940.5:ENST00000442054.5:ENST00000366764.8:ENST00000441725.1	protein_coding	protein_coding	protein_coding	protein_coding	2	69	2	2.08149	3.9619350000000004	5.84238	0.031124	5.0114e-4	0.143644	0.0206993
chr2	65430861	65430961	1144180	0	-	0.6	(0.57,1]	chr2	122242	533	INTRON	INTRON	SPRED2	ENSG00000198369.10	ENST00000356388.9:ENST00000440972.1	protein_coding	protein_coding	protein_coding	protein_coding	2	54	2	3.76536	3.9619150000000003	4.15847	1.35835e-4	1.26324e-5	0.0100405	0.00281675
chr15	28212883	28212983	6122925	0	-	0.45	(0.44,0.476]	chr15	583195	3	SS3_PROX	SS3_PROX:INTRON	HERC2	ENSG00000128731.18	ENST00000261609.13	protein_coding	protein_coding	protein_coding	protein_coding	1	43	2	3.02366	3.96183	4.9	0.00603307	0.00423315	0.0700813	0.0572185
chr3	177023015	177023114	1870657	0	-	0.252525	[0,0.28]	chr3	187269	38	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	TBL1XR1	ENSG00000177565.18	ENST00000636864.1:ENST00000457928.7:ENST00000430069.5:ENST00000637659.1:ENST00000474363.1:ENST00000673974.1:ENST00000631253.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	136	2	3.52594	3.96183	4.39772	0.00224145	2.3634e-5	0.0423923	0.00380885
chr9	34615835	34615932	4247118	0	-	0.453608	(0.44,0.476]	chr9	390670	12	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	DCTN3	ENSG00000137100.16	ENST00000378916.8:ENST00000259632.12:ENST00000341694.6:ENST00000421919.5:ENST00000479399.5:ENST00000477738.6:ENST00000472074.1:ENST00000378913.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	43	2	3.02366	3.96183	4.9	0.00603307	0.00423315	0.0700813	0.0572185
chr3	186970982	186971081	1586581	0	+	0.464646	(0.44,0.476]	chr3	164332	67	INTRON	INTRON	ST6GAL1	ENSG00000073849.16	ENST00000676786.1:ENST00000169298.8:ENST00000457772.6:ENST00000455441.5:ENST00000427315.5:ENST00000677292.1:ENST00000458216.5:ENST00000430309.5:ENST00000417392.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	70	2	2.08211	3.96179	5.84147	0.0130715	1.03947e-4	0.0996047	0.00915599
chr10	73132796	73132893	4647923	0	-	0.391753	(0.378,0.408]	chr10	427573	20	INTRON	INTRON	ECD	ENSG00000122882.11	ENST00000494307.1	protein_coding	protein_coding	protein_coding	protein_coding	1	48	2	3.00568	3.96172	4.91776	0.00811866	0.00196368	0.0766625	0.0411469
chr13	113613348	113613447	5550118	0	+	0.40404	(0.378,0.408]	chr13	530377	19	INTRON	INTRON	TFDP1	ENSG00000198176.13	ENST00000475254.5:ENST00000465174.1:ENST00000375370.10:ENST00000544902.5:ENST00000408980.6:ENST00000453989.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	48	2	3.00568	3.96172	4.91776	0.00811866	0.00196368	0.0766625	0.0411469
chr21	38106826	38106926	7463954	0	-	0.4	(0.378,0.408]	chr21	760303	71	INTRON	INTRON	DSCR4	ENSG00000184029.9	ENST00000398948.5:ENST00000328264.7:ENST00000482032.1	lncRNA	lncRNA	lncRNA	lncRNA	1	44	2	3.1136	3.96164	4.80968	0.00679828	0.00443339	0.0711802	0.061054
chr7	24604977	24605077	3291032	0	+	0.4	(0.378,0.408]	chr7	305717	74	INTRON	INTRON	PALS2	ENSG00000105926.16	ENST00000432190.5:ENST00000409761.5:ENST00000222644.10:ENST00000396475.6:ENST00000430180.5:ENST00000426450.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	44	2	3.1136	3.96164	4.80968	0.00679828	0.00443339	0.0711802	0.061054
chr15	66596733	66596832	6050928	0	+	0.363636	(0.35,0.378]	chr15	576221	141	INTRON	INTRON	LINC01169	ENSG00000259471.1	ENST00000558797.1	lncRNA	lncRNA	lncRNA	lncRNA	2	66	2	2.32464	3.9615549999999997	5.59847	0.0159285	1.39739e-4	0.101453	0.0101825
chr5	141611309	141611409	2740112	0	-	0.25	[0,0.28]	chr5	258168	227	INTRON	INTRON	DIAPH1	ENSG00000131504.18	ENST00000647433.1:ENST00000389054.8:ENST00000518047.5:ENST00000523100.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	134	2	3.84377	3.961465	4.07916	6.90098e-4	1.18305e-4	0.0240759	0.00930884
chr15	73622127	73622227	6221067	0	-	0.36	(0.35,0.378]	chr15	593920	222	INTRON	INTRON	NPTN	ENSG00000156642.17	ENST00000351217.10:ENST00000345330.9:ENST00000565325.5:ENST00000562924.5:ENST00000563691.5:ENST00000565282.5:ENST00000564551.1:ENST00000563753.1:ENST00000567198.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	51	2	2.32443	3.96145	5.59847	0.0544216	1.39739e-4	0.164972	0.0101825
chr12	62337385	62337485	5150334	0	+	0.35	(0.32,0.35]	chr12	487350	8	INTRON	INTRON	USP15	ENSG00000135655.16	ENST00000353364.7:ENST00000550632.5:ENST00000280377.10	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	51	2	2.68921	3.96124	5.23327	0.0230336	9.33826e-4	0.118056	0.0278746
chr22	21851327	21851427	7561223	0	-	0.26	[0,0.28]	chr22	773388	431	INTRON	INTRON	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	2	72	2	2.48813	3.961205	5.43428	0.00953591	0.00400834	0.0863913	0.0551303
chr19	1272793	1272880	6994624	0	+	0.563218	(0.515,0.57]	chr19	693002	5	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	CIRBP	ENSG00000099622.14	ENST00000588030.5:ENST00000586472.5:ENST00000588090.5:ENST00000591935.5:ENST00000586548.5:ENST00000585913.5:ENST00000589710.5:ENST00000586773.5:ENST00000587896.6:ENST00000593093.5:ENST00000413636.6:ENST00000590347.5:ENST00000587169.5:ENST00000320936.9:ENST00000586636.5:ENST00000591376.5:ENST00000591055.5:ENST00000589235.5:ENST00000585914.5:ENST00000588344.2:ENST00000592234.5:ENST00000444172.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	149	2	3.74144	3.961185	4.18093	1.04004e-5	8.72574e-7	0.00235262	5.74603e-4
chr16	89728149	89728246	6421736	0	+	0.329897	(0.32,0.35]	chr16	616579	4	INTRON	INTRON	ZNF276	ENSG00000158805.12	ENST00000562530.5:ENST00000289816.9:ENST00000568064.5:ENST00000563983.5:ENST00000443381.7:ENST00000568295.5:ENST00000561536.5:ENST00000563541.1:ENST00000569426.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	51	2	2.74415	3.9611849999999995	5.17822	0.0198267	0.00115625	0.109608	0.0313436
chr1	55194013	55194113	465691	0	-	0.38	(0.378,0.408]	chr1	56290	155	INTRON	INTRON	USP24	ENSG00000162402.14	ENST00000294383.7	protein_coding	protein_coding	protein_coding	protein_coding	2	59	2	2.41037	3.961055	5.51174	0.0100185	5.93655e-4	0.0880217	0.0225024
chr11	108080034	108080133	4856454	0	+	0.323232	(0.32,0.35]	chr11	452929	14	INTRON	INTRON	CUL5	ENSG00000166266.14	ENST00000393094.7:ENST00000531427.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	47	2	2.84569	3.96099	5.07629	0.0121137	0.00468114	0.0962599	0.0600108
chr1	220028804	220028902	639012	0	-	0.234694	[0,0.28]	chr1	75303	32	INTRON	INTRON	EPRS1	ENSG00000136628.18	ENST00000366923.8:ENST00000609181.5:ENST00000477030.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	56	2	3.30083	3.9608350000000003	4.62084	0.0313633	0.00319246	0.13151	0.0520345
chr15	58058508	58058608	6187472	0	-	0.17	[0,0.28]	chr15	589793	4	SS3_PROX	SS3_PROX:INTRON	ALDH1A2	ENSG00000128918.15	ENST00000537372.5:ENST00000249750.9:ENST00000347587.7:ENST00000430119.6:ENST00000558231.5:ENST00000558595.5:ENST00000558239.5:ENST00000557967.5:ENST00000558073.5:ENST00000559297.5:ENST00000560122.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	56	2	3.30083	3.9608350000000003	4.62084	0.0313633	0.00319246	0.13151	0.0520345
chr2	175113693	175113793	1271783	0	-	0.25	[0,0.28]	chr2	134417	3	SS5_PROX	SS5_PROX:INTRON	ATF2	ENSG00000115966.18	ENST00000345739.9:ENST00000426833.7:ENST00000264110.7:ENST00000409437.5:ENST00000409635.5:ENST00000435004.6:ENST00000428760.5:ENST00000392544.5:ENST00000417080.5:ENST00000456655.5:ENST00000421438.5:ENST00000429579.5:ENST00000415955.5:ENST00000409499.5:ENST00000435231.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	56	2	3.30083	3.9608350000000003	4.62084	0.0313633	0.00319246	0.13151	0.0520345
chr17	2671180	2671274	6548229	0	+	0.414894	(0.408,0.44]	chr17	635276	10	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	PAFAH1B1	ENSG00000007168.14	ENST00000397195.10:ENST00000676201.1:ENST00000675621.1:ENST00000676353.1:ENST00000674717.1:ENST00000675202.1:ENST00000675764.1:ENST00000674608.1:ENST00000676077.1:ENST00000676098.1:ENST00000572915.6:ENST00000675430.1:ENST00000675331.1:ENST00000676188.1:ENST00000574816.5:ENST00000675390.1:ENST00000676456.1:ENST00000397193.7:ENST00000574468.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	97	2	3.52471	3.96068	4.39665	0.00112428	7.2191e-6	0.0306963	0.00190592
chr1	179842722	179842821	593108	0	-	0.515152	(0.476,0.515]	chr1	71080	29	UTR3	UTR3:EXON_MRNA	TOR1AIP2	ENSG00000169905.13	ENST00000367612.7:ENST00000609928.6	protein_coding	protein_coding	protein_coding	protein_coding	3	128	2	3.66639	3.96065	4.25491	3.7744e-5	1.76524e-5	0.00523787	0.0031975
chr17	29440864	29440964	6586141	0	+	0.36	(0.35,0.378]	chr17	640377	369	INTRON	INTRON	TAOK1	ENSG00000160551.12	ENST00000261716.8:ENST00000583121.5:ENST00000587277.1:ENST00000536202.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	50	2	3.62272	3.9605550000000003	4.29839	0.0294717	5.64719e-4	0.128055	0.021704
chr7	76604897	76604997	3340917	0	+	0.37	(0.35,0.378]	chr7	311170	530	INTRON	INTRON	ENSG00000205485	ENSG00000205485.13	ENST00000418663.5:ENST00000450661.1:ENST00000423084.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	1	51	2	3.17244	3.96052	4.7486	0.00487788	0.00418965	0.0607461	0.0591344
chr7	128746458	128746557	3408447	0	+	0.454545	(0.44,0.476]	chr7	318422	67	INTRON	INTRON	CALU	ENSG00000128595.17	ENST00000535011.6:ENST00000542996.6:ENST00000249364.9:ENST00000449187.6:ENST00000479257.5	protein_coding	protein_coding	protein_coding	protein_coding	4	81	2	2.47437	3.960285	5.4462	0.00117531	5.83686e-4	0.0316592	0.0223753
chr17	77498022	77498122	6681652	0	+	0.58	(0.57,1]	chr17	652627	1	SS3_PROX	SS3_PROX:INTRON	SEPTIN9	ENSG00000184640.20	ENST00000591198.5:ENST00000427177.6:ENST00000431235.6:ENST00000449803.6:ENST00000329047.13:ENST00000588690.6:ENST00000423034.6:ENST00000427674.6:ENST00000585930.5:ENST00000541152.6:ENST00000591088.5:ENST00000592951.5:ENST00000427180.5:ENST00000589246.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	29	2	3.31859	3.9600999999999997	4.60161	0.00142229	0.00137292	0.0340865	0.0340241
chr4	138682	138782	1905787	0	+	0.38	(0.378,0.408]	chr4	191032	68	INTRON	INTRON	ZNF718	ENSG00000250312.8	ENST00000642529.1:ENST00000510175.6:ENST00000609714.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	49	2	3.14892	3.9599849999999996	4.77105	0.00499984	0.00330823	0.0617433	0.0527031
chr20	57376646	57376742	7288736	0	+	0.59375	(0.57,1]	chr20	741580	15	INTRON	INTRON	RAE1	ENSG00000101146.13	ENST00000371242.6:ENST00000395841.7:ENST00000492498.5:ENST00000395840.6:ENST00000462438.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	29	2	3.02967	3.9598250000000004	4.88998	0.00471306	4.016e-4	0.0631419	0.0185763
chr10	87334617	87334715	4661315	0	-	0.510204	(0.476,0.515]	chr10	429496	28	EXON_LNCRNA	EXON_LNCRNA:SS3_PROX:INTRON	NUTM2A-AS1	ENSG00000223482.9	ENST00000692417.1:ENST00000688214.1:ENST00000659257.1:ENST00000671543.1:ENST00000451940.6:ENST00000687947.1:ENST00000663644.1:ENST00000684884.1:ENST00000664664.1:ENST00000446751.6:ENST00000433530.7:ENST00000688257.1:ENST00000433920.5:ENST00000687925.1:ENST00000666515.2:ENST00000688926.1:ENST00000447424.6:ENST00000690598.1:ENST00000663113.1:ENST00000667520.2:ENST00000693252.1:ENST00000687827.1:ENST00000687141.1:ENST00000654503.2:ENST00000655272.2:ENST00000668676.1:ENST00000653080.1:ENST00000690287.1:ENST00000413722.6:ENST00000653238.1:ENST00000660454.1:ENST00000688790.1:ENST00000660726.2:ENST00000417860.7:ENST00000663683.1:ENST00000686862.1:ENST00000413961.5:ENST00000686013.1:ENST00000458739.1:ENST00000667985.2:ENST00000691822.1:ENST00000664997.1:ENST00000662586.1:ENST00000656123.1:ENST00000366446.5	lncRNA	lncRNA	lncRNA	lncRNA	1	43	2	2.94692	3.9597249999999997	4.97253	0.00794331	0.00311573	0.0797304	0.0498063
chr3	43421516	43421616	1673428	0	-	0.48	(0.476,0.515]	chr3	170966	483	INTRON	INTRON	ANO10	ENSG00000160746.13	ENST00000292246.8:ENST00000350459.8:ENST00000396091.7:ENST00000414522.6:ENST00000451430.6:ENST00000448045.1	protein_coding	protein_coding	protein_coding	protein_coding	2	58	2	2.37731	3.9597049999999996	5.5421	0.0111793	3.56777e-4	0.0937192	0.0175154
chr2	61872901	61873001	1131299	0	-	0.36	(0.35,0.378]	chr2	121677	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CCT4	ENSG00000115484.15	ENST00000394440.8:ENST00000544079.2:ENST00000461540.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	53	2	3.33403	3.9596999999999998	4.58537	0.00703328	0.00272701	0.0754576	0.0467523
chr3	48000178	48000278	1686611	0	-	0.43	(0.408,0.44]	chr3	172270	9	INTRON	INTRON	MAP4	ENSG00000047849.22	ENST00000683076.1:ENST00000395734.7:ENST00000426837.6:ENST00000360240.10:ENST00000423088.5:ENST00000633710.1:ENST00000434267.5:ENST00000439356.2:ENST00000468075.2	protein_coding	protein_coding	protein_coding	protein_coding	3	69	2	2.30838	3.95953	5.61068	0.00547703	3.21002e-4	0.0671198	0.0165409
chr15	93012644	93012744	6104876	0	+	0.36	(0.35,0.378]	chr15	581636	2	SS5_PROX	SS5_PROX:INTRON	CHD2	ENSG00000173575.22	ENST00000626874.2:ENST00000394196.9:ENST00000625662.2:ENST00000627460.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	49	2	2.60341	3.959485	5.31556	0.0275785	4.97087e-4	0.123904	0.0201536
chr5	32163356	32163456	2597406	0	-	0.5	(0.476,0.515]	chr5	246744	191	INTRON	INTRON	GOLPH3	ENSG00000113384.14	ENST00000265070.7:ENST00000503610.5:ENST00000512668.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	70	2	2.55884	3.959395	5.35995	0.00186081	7.54256e-4	0.039946	0.0251179
chr11	9252590	9252690	4908946	0	-	0.44	(0.408,0.44]	chr11	460115	72	INTRON	INTRON	DENND5A	ENSG00000184014.9	ENST00000328194.8:ENST00000681203.1:ENST00000530780.2:ENST00000679999.1:ENST00000680470.1:ENST00000680554.1:ENST00000681425.1:ENST00000679568.1:ENST00000679446.1:ENST00000680294.1:ENST00000680742.1:ENST00000680885.1:ENST00000530044.5:ENST00000526707.5:ENST00000532696.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	43	2	3.02513	3.9592	4.89327	0.0059965	0.00458906	0.0700606	0.0595107
chr12	132095110	132095210	5250295	0	+	0.34	(0.32,0.35]	chr12	499298	32	INTRON	INTRON	EP400P1	ENSG00000185684.16	ENST00000407361.8:ENST00000446190.5:ENST00000690966.1:ENST00000689047.1:ENST00000454179.7:ENST00000689533.1:ENST00000688036.1:ENST00000688136.1:ENST00000488030.5:ENST00000389560.6:ENST00000689403.1:ENST00000443539.6:ENST00000392352.5:ENST00000539205.5:ENST00000332441.7	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	1	51	2	2.6321	3.9592	5.2863	0.0268	7.56575e-4	0.123349	0.0251966
chr13	50095930	50096030	5491118	0	+	0.42	(0.408,0.44]	chr13	526033	121	INTRON	INTRON	DLEU1	ENSG00000176124.15	ENST00000469754.3:ENST00000655550.1:ENST00000467721.5:ENST00000468522.5:ENST00000490577.5:ENST00000491341.5:ENST00000491615.5:ENST00000463474.7:ENST00000468168.5:ENST00000476738.5:ENST00000461527.7:ENST00000486895.5:ENST00000659280.2	lncRNA	lncRNA	lncRNA	lncRNA	1	43	2	3.02513	3.9592	4.89327	0.0059965	0.00458906	0.0700606	0.0595107
chr6	36448567	36448665	2853970	0	+	0.438776	(0.408,0.44]	chr6	269700	47	INTRON	INTRON	KCTD20	ENSG00000112078.14	ENST00000536244.5:ENST00000373731.7:ENST00000483557.5:ENST00000474988.5:ENST00000498267.5:ENST00000481911.5:ENST00000449081.6:ENST00000265344.8:ENST00000460983.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	43	2	3.02513	3.9592	4.89327	0.0059965	0.00458906	0.0700606	0.0595107
chr7	158798753	158798841	3689505	0	-	0.431818	(0.408,0.44]	chr7	342416	3	SS5_PROX	SS5_PROX:INTRON	ESYT2	ENSG00000117868.18	ENST00000251527.10:ENST00000275418.13:ENST00000652148.1:ENST00000483958.5:ENST00000497111.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	43	2	3.02513	3.9592	4.89327	0.0059965	0.00458906	0.0700606	0.0595107
chrX	130104926	130105026	7887536	0	-	0.44	(0.408,0.44]	chrX	803067	230	INTRON	INTRON	ELF4	ENSG00000102034.18	ENST00000308167.10:ENST00000335997.11:ENST00000434609.1	protein_coding	protein_coding	protein_coding	protein_coding	1	43	2	3.02513	3.9592	4.89327	0.0059965	0.00458906	0.0700606	0.0595107
chr1	100102454	100102554	515549	0	-	0.5	(0.476,0.515]	chr1	60435	1	SS5_PROX	SS5_PROX:INTRON	SASS6	ENSG00000156876.10	ENST00000462159.1:ENST00000287482.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	94	2	3.86502	3.959175	4.05333	2.2858e-4	5.62932e-5	0.0138641	0.00613846
chr20	35772479	35772579	7262886	0	+	0.37	(0.35,0.378]	chr20	738049	4	SS5_PROX	SS5_PROX:INTRON	PHF20	ENSG00000025293.17	ENST00000461122.5:ENST00000461405.1:ENST00000374012.8:ENST00000452270.5:ENST00000374000.8:ENST00000339089.10:ENST00000481202.5:ENST00000617560.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	49	2	2.89003	3.959175	5.02832	0.0122391	0.00156444	0.0910127	0.0365263
chr1	224136206	224136305	321333	0	+	0.323232	(0.32,0.35]	chr1	37008	16	INTRON	INTRON	FBXO28	ENSG00000143756.12	ENST00000366862.10:ENST00000424254.6:ENST00000523990.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	64	2	2.78706	3.9591450000000004	5.13123	0.00394704	0.00253645	0.0548259	0.0465056
chr1	180486276	180486376	595670	0	-	0.43	(0.408,0.44]	chr1	71198	557	INTRON	INTRON	ACBD6	ENSG00000230124.8	ENST00000645415.1:ENST00000642319.1:ENST00000367595.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	43	2	2.96007	3.95912	4.95817	0.00753901	0.00372419	0.0773151	0.0535094
chr15	95768053	95768153	6109653	0	+	0.43	(0.408,0.44]	chr15	581795	32	INTRON	INTRON	ENSG00000275016	ENSG00000275016.5	ENST00000612595.2:ENST00000614344.5:ENST00000666682.1:ENST00000667774.1:ENST00000616588.4:ENST00000656202.1:ENST00000666386.1	lncRNA	lncRNA	lncRNA	lncRNA	1	43	2	2.96007	3.95912	4.95817	0.00753901	0.00372419	0.0773151	0.0535094
chr17	2164362	2164462	6703309	0	-	0.44	(0.408,0.44]	chr17	656271	694	INTRON	INTRON	SMG6	ENSG00000070366.14	ENST00000263073.11:ENST00000354901.8:ENST00000536871.6:ENST00000575454.1:ENST00000570874.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	43	2	2.96007	3.95912	4.95817	0.00753901	0.00372419	0.0773151	0.0535094
chr7	5356121	5356219	3471386	0	-	0.438776	(0.408,0.44]	chr7	324595	37	INTRON	INTRON	TNRC18	ENSG00000182095.15	ENST00000399537.8:ENST00000430969.6:ENST00000440081.2	protein_coding	protein_coding	protein_coding	protein_coding	1	43	2	2.96007	3.95912	4.95817	0.00753901	0.00372419	0.0773151	0.0535094
chr17	82816331	82816431	6694857	0	+	0.45	(0.44,0.476]	chr17	654903	10	INTRON	INTRON	TBCD	ENSG00000141556.22	ENST00000682479.1:ENST00000682722.1:ENST00000684464.1:ENST00000684544.1:ENST00000681983.1:ENST00000684361.1:ENST00000683184.1:ENST00000683282.1:ENST00000684408.1:ENST00000355528.9:ENST00000683444.1:ENST00000684776.1:ENST00000683041.1:ENST00000684760.1:ENST00000684349.1:ENST00000682213.1:ENST00000683009.1:ENST00000682921.1:ENST00000539345.6:ENST00000684000.1:ENST00000684188.1:ENST00000684429.1:ENST00000682610.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	43	2	3.08591	3.958965	4.83202	0.00525002	0.00481262	0.0638089	0.0633615
chr4	4529297	4529397	2102200	0	-	0.47	(0.44,0.476]	chr4	208155	572	INTRON	INTRON	STX18	ENSG00000168818.10	ENST00000505286.5:ENST00000306200.7:ENST00000507908.5:ENST00000512780.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	43	2	3.08591	3.958965	4.83202	0.00525002	0.00481262	0.0638089	0.0633615
chr15	66650874	66650974	6051470	0	+	0.36	(0.35,0.378]	chr15	576221	683	INTRON	INTRON	LINC01169	ENSG00000259471.1	ENST00000558797.1	lncRNA	lncRNA	lncRNA	lncRNA	2	66	2	2.4077	3.958945	5.51019	0.0122026	2.10803e-4	0.0910127	0.0126882
chr6	17784201	17784291	3066480	0	-	0.444444	(0.44,0.476]	chr6	284941	1	INTRON	INTRON	KIF13A	ENSG00000137177.20	ENST00000378814.9:ENST00000502297.5:ENST00000259711.11:ENST00000378826.6:ENST00000378843.6:ENST00000636847.1:ENST00000358380.10:ENST00000506044.1	protein_coding	protein_coding	protein_coding	protein_coding	2	95	2	3.93585	3.958845	3.98184	1.34748e-4	1.04728e-4	0.0106044	0.00863456
chr19	19416717	19416817	7035456	0	+	0.39	(0.378,0.408]	chr19	701433	103	INTRON	INTRON	GATAD2A	ENSG00000167491.18	ENST00000494516.6:ENST00000360315.7:ENST00000609040.5:ENST00000417582.6:ENST00000683918.1:ENST00000448576.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	132	2	3.48276	3.958835	4.43491	1.23627e-4	6.16468e-6	0.0100054	0.00174279
chr16	15027791	15027889	6305681	0	+	0.571429	(0.57,1]	chr16	603342	7	INTRON	INTRON	PDXDC1	ENSG00000179889.20	ENST00000563679.5:ENST00000535621.6:ENST00000396410.9:ENST00000455313.6:ENST00000562119.5:ENST00000570001.5:ENST00000569715.5:ENST00000627450.2:ENST00000450288.3:ENST00000566633.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	39	2	2.50742	3.9587700000000003	5.41012	0.00631173	1.66635e-5	0.0687526	0.00307972
chr4	94258145	94258244	1998025	0	+	0.464646	(0.44,0.476]	chr4	199451	41	INTRON	INTRON	SMARCAD1	ENSG00000163104.18	ENST00000359052.8:ENST00000457823.6:ENST00000354268.9:ENST00000510105.5:ENST00000394961.6:ENST00000509418.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	43	2	2.89047	3.95875	5.02703	0.00955699	0.00278015	0.0863913	0.0469265
chr2	202887528	202887628	1315216	0	-	0.46	(0.44,0.476]	chr2	137954	26	INTRON	INTRON	WDR12	ENSG00000138442.11	ENST00000688520.1:ENST00000261015.5:ENST00000477727.5:ENST00000475611.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	46	2	2.9195	3.95866	4.99782	0.0102021	0.0013223	0.0850389	0.0333932
chr2	47821917	47822017	1115261	0	-	0.55	(0.515,0.57]	chr2	119632	3	SS5_PROX	SS5_PROX:INTRON	FBXO11	ENSG00000138081.22	ENST00000684712.1:ENST00000682451.1:ENST00000403359.8:ENST00000402508.5:ENST00000683894.1:ENST00000681999.1:ENST00000682975.1:ENST00000684085.1:ENST00000493962.6:ENST00000492225.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	42	2	3.1473	3.95857	4.76984	0.00397184	0.00198034	0.0549214	0.0411469
chr8	105691235	105691335	3840981	0	+	0.52	(0.515,0.57]	chr8	354097	3	SS5_PROX	SS5_PROX:INTRON	ZFPM2	ENSG00000169946.14	ENST00000407775.7:ENST00000520492.5:ENST00000511341.6:ENST00000517361.1:ENST00000522296.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	42	2	3.1473	3.95857	4.76984	0.00397184	0.00198034	0.0549214	0.0411469
chr2	126661856	126661955	862066	0	+	0.616162	(0.57,1]	chr2	96613	32	INTRON	INTRON	GYPC	ENSG00000136732.16	ENST00000459787.1:ENST00000259254.9:ENST00000409836.3:ENST00000356887.12	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	39	2	2.86892	3.95851	5.0481	0.00125753	1.32594e-4	0.0323608	0.00992554
chr8	27837551	27837651	3927333	0	-	0.64	(0.57,1]	chr8	359615	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	PBK	ENSG00000168078.10	ENST00000301905.9:ENST00000522944.5:ENST00000524266.1:ENST00000521226.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	89	2	3.91793	3.9584799999999998	3.99903	5.86096e-5	4.98377e-8	0.00668534	9.23523e-5
chr6	43341611	43341711	3096401	0	-	0.39	(0.378,0.408]	chr6	289874	1	SS5_PROX	SS5_PROX:INTRON	ZNF318	ENSG00000171467.16	ENST00000605935.5:ENST00000606599.1:ENST00000361428.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	64	2	2.47752	3.9582200000000003	5.43892	0.0092831	2.28412e-4	0.0817766	0.0133228
chrX	123628468	123628565	7877984	0	-	0.494845	(0.476,0.515]	chrX	802471	1	INTRON	INTRON	THOC2	ENSG00000125676.20	ENST00000245838.13:ENST00000355725.8:ENST00000491737.5	protein_coding	protein_coding	protein_coding	protein_coding	3	69	2	2.25138	3.958215	5.66505	0.00692374	2.08835e-4	0.0753208	0.0131276
chr18	12702085	12702185	6949723	0	-	0.41	(0.408,0.44]	chr18	687503	2	SS5_PROX	SS5_PROX:INTRON	CEP76	ENSG00000101624.11	ENST00000590143.5:ENST00000262127.7:ENST00000423709.6:ENST00000593250.5:ENST00000587929.1:ENST00000586887.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	47	2	3.05705	3.957885	4.85872	0.00658331	0.00221911	0.0701901	0.0435144
chr19	21724823	21724921	7158869	0	-	0.418367	(0.408,0.44]	chr19	723701	22	UTR3	UTR3:EXON_MRNA	ZNF100	ENSG00000197020.12	ENST00000358296.11	protein_coding	protein_coding	protein_coding	protein_coding	1	47	2	3.05705	3.957885	4.85872	0.00658331	0.00221911	0.0701901	0.0435144
chr3	197858034	197858133	1598404	0	+	0.353535	(0.35,0.378]	chr3	165643	32	INTRON	INTRON	LRCH3	ENSG00000186001.14	ENST00000438796.6:ENST00000428136.2:ENST00000425562.7:ENST00000441090.6:ENST00000414675.6:ENST00000334859.8:ENST00000461674.5:ENST00000452660.5:ENST00000433298.5:ENST00000481048.5:ENST00000466845.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	45	2	2.99173	3.9576399999999996	4.92355	0.00713365	0.00573514	0.0756118	0.0657377
chr9	109067061	109067161	4312067	0	-	0.36	(0.35,0.378]	chr9	396343	21	INTRON	INTRON	TMEM245	ENSG00000106771.13	ENST00000374586.8:ENST00000413712.6:ENST00000491854.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	45	2	2.99173	3.9576399999999996	4.92355	0.00713365	0.00573514	0.0756118	0.0657377
chrX	154058964	154059063	7912709	0	-	0.353535	(0.35,0.378]	chrX	805630	5	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	MECP2	ENSG00000169057.24	ENST00000303391.11:ENST00000453960.7:ENST00000628176.2:ENST00000407218.5:ENST00000486506.5:ENST00000369957.5:ENST00000631210.1:ENST00000496908.5:ENST00000415944.3:ENST00000630151.2:ENST00000676382.1:ENST00000611468.2:ENST00000637533.1:ENST00000675526.1:ENST00000637791.1:ENST00000675841.1:ENST00000674996.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	45	2	2.99173	3.9576399999999996	4.92355	0.00713365	0.00573514	0.0756118	0.0657377
chr12	131780112	131780211	5249793	0	+	0.353535	(0.35,0.378]	chr12	499215	14	INTRON	INTRON	SFSWAP	ENSG00000061936.10	ENST00000261674.9:ENST00000538548.5:ENST00000541286.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	45	2	2.92952	3.9575650000000002	4.98561	0.00881187	0.00474226	0.084878	0.0600445
chr2	38599297	38599397	1099742	0	-	0.36	(0.35,0.378]	chr2	117957	73	INTRON	INTRON	HNRNPLL	ENSG00000143889.16	ENST00000449105.8:ENST00000409636.5:ENST00000358367.8:ENST00000608859.5:ENST00000378915.7:ENST00000409328.5:ENST00000410076.5:ENST00000425682.1:ENST00000498516.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	45	2	2.92952	3.9575650000000002	4.98561	0.00881187	0.00474226	0.084878	0.0600445
chr6	15330423	15330523	2823791	0	+	0.36	(0.35,0.378]	chr6	265192	155	INTRON	INTRON	JARID2	ENSG00000008083.14	ENST00000341776.7:ENST00000397311.4	protein_coding	protein_coding	protein_coding	protein_coding	1	45	2	2.92952	3.9575650000000002	4.98561	0.00881187	0.00474226	0.084878	0.0600445
chr1	92767508	92767608	507993	0	-	0.29	(0.28,0.32]	chr1	59886	305	INTRON	INTRON	EVI5	ENSG00000067208.16	ENST00000370331.5:ENST00000540033.2:ENST00000684568.2:ENST00000474806.1:ENST00000466778.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	22	2	3.88145	3.95745	4.03345	0.0704058	0.0561985	0.184298	0.18407
chr1	93080204	93080290	162547	0	+	0.313953	(0.28,0.32]	chr1	17561	3	INTRON	INTRON	MTF2	ENSG00000143033.18	ENST00000540243.5:ENST00000545708.5:ENST00000474314.6:ENST00000370298.9:ENST00000473430.5:ENST00000494963.5:ENST00000471953.5:ENST00000370303.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	22	2	3.88145	3.95745	4.03345	0.0704058	0.0561985	0.184298	0.18407
chr1	180461115	180461215	595418	0	-	0.31	(0.28,0.32]	chr1	71198	305	INTRON	INTRON	ACBD6	ENSG00000230124.8	ENST00000645415.1:ENST00000642319.1:ENST00000367595.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	22	2	3.88145	3.95745	4.03345	0.0704058	0.0561985	0.184298	0.18407
chr10	117319872	117319971	4702150	0	-	0.292929	(0.28,0.32]	chr10	433746	5	INTRON	INTRON	PDZD8	ENSG00000165650.12	ENST00000334464.7:ENST00000489491.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	22	2	3.88145	3.95745	4.03345	0.0704058	0.0561985	0.184298	0.18407
chr10	133413014	133413114	4540409	0	+	0.31	(0.28,0.32]	chr10	419095	99	INTRON	INTRON	MTG1	ENSG00000148824.19	ENST00000477902.6:ENST00000317502.11:ENST00000432508.3:ENST00000460848.5:ENST00000473735.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	22	2	3.88145	3.95745	4.03345	0.0704058	0.0561985	0.184298	0.18407
chr11	10236056	10236156	4914158	0	-	0.29	(0.28,0.32]	chr11	460478	417	INTRON	INTRON	SBF2	ENSG00000133812.18	ENST00000692716.1:ENST00000689940.1:ENST00000256190.13:ENST00000689128.1:ENST00000675281.2:ENST00000676387.2:ENST00000676324.2:ENST00000689258.1:ENST00000533770.6:ENST00000688417.1:ENST00000687210.1:ENST00000526353.2:ENST00000693022.1:ENST00000693201.1:ENST00000686079.1:ENST00000688206.1:ENST00000687256.1:ENST00000685217.1:ENST00000693212.1:ENST00000687300.1:ENST00000688739.1:ENST00000690806.1:ENST00000686677.1:ENST00000692068.1:ENST00000690959.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	22	2	3.88145	3.95745	4.03345	0.0704058	0.0561985	0.184298	0.18407
chr11	62712131	62712231	4960834	0	-	0.29	(0.28,0.32]	chr11	466761	24	INTRON	INTRON	HNRNPUL2-BSCL2	ENSG00000234857.2	ENST00000403734.2	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	0	22	2	3.88145	3.95745	4.03345	0.0704058	0.0561985	0.184298	0.18407
chr11	108738296	108738395	4859379	0	+	0.292929	(0.28,0.32]	chr11	453510	36	INTRON	INTRON	DDX10	ENSG00000178105.12	ENST00000693015.1:ENST00000690021.1:ENST00000686283.1:ENST00000322536.8:ENST00000648124.1:ENST00000688583.1:ENST00000688536.1:ENST00000686617.1:ENST00000688976.1:ENST00000687072.1:ENST00000526794.1:ENST00000692839.1:ENST00000689812.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	22	2	3.88145	3.95745	4.03345	0.0704058	0.0561985	0.184298	0.18407
chr12	47694591	47694689	5317109	0	-	0.316327	(0.28,0.32]	chr12	505915	36	INTRON	INTRON	RPAP3	ENSG00000005175.10	ENST00000005386.8:ENST00000432584.7:ENST00000380650.4	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.88145	3.95745	4.03345	0.0704058	0.0561985	0.184298	0.18407
chr12	123305418	123305518	5444584	0	-	0.32	(0.28,0.32]	chr12	520975	3	INTRON	INTRON	SBNO1	ENSG00000139697.14	ENST00000602398.3:ENST00000267176.8:ENST00000420886.6	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.88145	3.95745	4.03345	0.0704058	0.0561985	0.184298	0.18407
chr14	30682333	30682432	5675660	0	+	0.282828	(0.28,0.32]	chr14	540720	51	INTRON	INTRON	SCFD1	ENSG00000092108.22	ENST00000678760.1:ENST00000677690.1:ENST00000678124.1:ENST00000678716.1:ENST00000678402.1:ENST00000679153.1:ENST00000678516.1:ENST00000678802.1:ENST00000679096.1:ENST00000679102.1:ENST00000678475.1:ENST00000676509.1:ENST00000676750.1:ENST00000679165.1:ENST00000676658.1:ENST00000678399.1:ENST00000678185.1:ENST00000677027.1:ENST00000678006.1:ENST00000677413.1:ENST00000555259.5:ENST00000554437.6:ENST00000676834.1:ENST00000678858.1:ENST00000553693.6:ENST00000676914.1:ENST00000676465.1:ENST00000676812.1:ENST00000678669.1:ENST00000676520.1:ENST00000676876.1:ENST00000677617.1:ENST00000676954.1:ENST00000677456.1:ENST00000678735.1:ENST00000679342.1:ENST00000678637.1:ENST00000677176.1:ENST00000557076.6:ENST00000677637.1:ENST00000677974.1:ENST00000458591.7:ENST00000484733.6:ENST00000556768.5:ENST00000544052.6:ENST00000463622.6:ENST00000676674.1:ENST00000677340.1:ENST00000311943.11:ENST00000679075.1:ENST00000678396.1:ENST00000676473.1:ENST00000396629.6:ENST00000678579.1:ENST00000678104.1:ENST00000554819.5:ENST00000554486.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	22	2	3.88145	3.95745	4.03345	0.0704058	0.0561985	0.184298	0.18407
chr14	68171217	68171317	5768890	0	+	0.29	(0.28,0.32]	chr14	547072	1012	INTRON	INTRON	RAD51B	ENSG00000182185.19	ENST00000487861.5:ENST00000471583.6:ENST00000479335.5:ENST00000487270.5:ENST00000488612.5:ENST00000553595.5:ENST00000497460.5:ENST00000492236.5:ENST00000554244.5:ENST00000478014.5:ENST00000469165.6:ENST00000460526.5:ENST00000468382.5:ENST00000557045.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	22	2	3.88145	3.95745	4.03345	0.0704058	0.0561985	0.184298	0.18407
chr15	34308610	34308709	6132223	0	-	0.313131	(0.28,0.32]	chr15	584095	91	INTRON	INTRON	SLC12A6	ENSG00000140199.13	ENST00000354181.8:ENST00000290209.9:ENST00000676379.1:ENST00000397702.6:ENST00000559664.5:ENST00000458406.6:ENST00000559523.5:ENST00000397707.6:ENST00000560611.5:ENST00000561080.5:ENST00000558667.5:ENST00000558589.5:ENST00000675289.1:ENST00000561120.5:ENST00000559236.5:ENST00000559484.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	22	2	3.88145	3.95745	4.03345	0.0704058	0.0561985	0.184298	0.18407
chr15	58719323	58719423	6193211	0	-	0.3	(0.28,0.32]	chr15	589988	12	INTRON	INTRON	ADAM10	ENSG00000137845.15	ENST00000260408.8:ENST00000402627.5:ENST00000561288.1:ENST00000559053.1:ENST00000558733.5:ENST00000439637.5:ENST00000497846.5:ENST00000558004.1:ENST00000560608.5:ENST00000561149.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	22	2	3.88145	3.95745	4.03345	0.0704058	0.0561985	0.184298	0.18407
chr15	64348480	64348579	6204755	0	-	0.282828	(0.28,0.32]	chr15	591778	2	INTRON	INTRON	CSNK1G1:ENSG00000259316	ENSG00000169118.18:ENSG00000259316.12	ENST00000303052.13:ENST00000607537.6:ENST00000634654.1:ENST00000634811.1:ENST00000634251.1:ENST00000634847.3:ENST00000635529.1:ENST00000634318.1:ENST00000635160.1:ENST00000635704.1:ENST00000634529.1:ENST00000635511.1:ENST00000635605.1:ENST00000635593.1:ENST00000634259.2:ENST00000560278.2:ENST00000635413.1:ENST00000634538.1:ENST00000635320.1:ENST00000558783.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	22	2	3.88145	3.95745	4.03345	0.0704058	0.0561985	0.184298	0.18407
chr15	94859760	94859860	6105226	0	+	0.29	(0.28,0.32]	chr15	581666	25	INTRON	INTRON	ENSG00000277654	ENSG00000277654.6	ENST00000618611.4:ENST00000648065.1:ENST00000618377.1:ENST00000621842.4:ENST00000615751.4:ENST00000614581.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	0	22	2	3.88145	3.95745	4.03345	0.0704058	0.0561985	0.184298	0.18407
chr16	56825624	56825722	6360860	0	+	0.306122	(0.28,0.32]	chr16	610504	14	INTRON	INTRON	NUP93	ENSG00000102900.13	ENST00000563858.5:ENST00000308159.10:ENST00000569842.5:ENST00000564887.5:ENST00000567641.5:ENST00000542526.5	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.88145	3.95745	4.03345	0.0704058	0.0561985	0.184298	0.18407
chr16	68105394	68105494	6370424	0	+	0.3	(0.28,0.32]	chr16	612188	158	INTRON	INTRON	ENSG00000261864:NFATC3	ENSG00000261864.1:ENSG00000072736.19	ENST00000548144.1:ENST00000563319.5:ENST00000569766.5:ENST00000553077.5:ENST00000566301.5:ENST00000549350.5:ENST00000566893.5:ENST00000575270.5:ENST00000561714.5:ENST00000346183.8:ENST00000568466.6:ENST00000539828.6:ENST00000562171.1:ENST00000349223.9:ENST00000329524.8:ENST00000379165.8:ENST00000562926.5:ENST00000570212.5:ENST00000563796.5:ENST00000567152.5:ENST00000563288.5:ENST00000535127.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA:processed_transcript	0	22	2	3.88145	3.95745	4.03345	0.0704058	0.0561985	0.184298	0.18407
chr16	69804294	69804394	6382023	0	+	0.29	(0.28,0.32]	chr16	613319	46	INTRON	INTRON	WWP2	ENSG00000198373.13	ENST00000569620.5:ENST00000359154.7:ENST00000569174.5:ENST00000544162.5:ENST00000567986.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	22	2	3.88145	3.95745	4.03345	0.0704058	0.0561985	0.184298	0.18407
chr16	75007769	75007869	6389506	0	+	0.3	(0.28,0.32]	chr16	614482	50	INTRON	INTRON	ZNRF1	ENSG00000186187.12	ENST00000335325.9:ENST00000320619.10:ENST00000567962.5:ENST00000566250.5:ENST00000564320.1:ENST00000568511.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	22	2	3.88145	3.95745	4.03345	0.0704058	0.0561985	0.184298	0.18407
chr18	12489585	12489684	6947596	0	-	0.30303	(0.28,0.32]	chr18	687337	32	INTRON	INTRON	SPIRE1	ENSG00000134278.16	ENST00000409402.9:ENST00000410092.7:ENST00000309836.9:ENST00000440472.6:ENST00000453447.6:ENST00000464481.5:ENST00000592156.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	22	2	3.88145	3.95745	4.03345	0.0704058	0.0561985	0.184298	0.18407
chr19	36221182	36221282	7057485	0	+	0.32	(0.28,0.32]	chr19	704664	26	INTRON	INTRON	ZNF146	ENSG00000167635.12	ENST00000456324.5:ENST00000591063.5:ENST00000443387.3:ENST00000586094.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	22	2	3.88145	3.95745	4.03345	0.0704058	0.0561985	0.184298	0.18407
chr2	178127934	178128030	928030	0	+	0.302083	(0.28,0.32]	chr2	101986	14	INTRON	INTRON	RBM45	ENSG00000155636.15	ENST00000424000.6:ENST00000286070.10:ENST00000616198.4:ENST00000455903.6:ENST00000424099.1:ENST00000464647.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	22	2	3.88145	3.95745	4.03345	0.0704058	0.0561985	0.184298	0.18407
chr20	21356277	21356346	7248690	0	+	0.318841	(0.28,0.32]	chr20	735982	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	XRN2	ENSG00000088930.8	ENST00000377191.5	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.88145	3.95745	4.03345	0.0704058	0.0561985	0.184298	0.18407
chr21	6252596	6252696	7425164	0	-	0.3	(0.28,0.32]	chr21	757447	161	INTRON	INTRON	ENSG00000275496	ENSG00000275496.4	ENST00000621924.4:ENST00000617746.4:ENST00000624446.1:ENST00000623405.3:ENST00000623575.3:ENST00000623506.1	lncRNA	lncRNA	lncRNA	lncRNA	0	22	2	3.88145	3.95745	4.03345	0.0704058	0.0561985	0.184298	0.18407
chr21	21150569	21150669	7380515	0	+	0.29	(0.28,0.32]	chr21	752602	1516	INTRON	INTRON	NCAM2	ENSG00000154654.15	ENST00000400546.6	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.88145	3.95745	4.03345	0.0704058	0.0561985	0.184298	0.18407
chr22	28542961	28543061	7571565	0	-	0.31	(0.28,0.32]	chr22	774287	1000	INTRON	INTRON	TTC28	ENSG00000100154.15	ENST00000397906.7	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.88145	3.95745	4.03345	0.0704058	0.0561985	0.184298	0.18407
chr3	20149107	20149204	1377536	0	+	0.319588	(0.28,0.32]	chr3	145184	2	INTRON	INTRON	KAT2B	ENSG00000114166.8	ENST00000263754.5	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.88145	3.95745	4.03345	0.0704058	0.0561985	0.184298	0.18407
chr3	43588753	43588853	1675108	0	-	0.29	(0.28,0.32]	chr3	171020	79	INTRON	INTRON	ANO10	ENSG00000160746.13	ENST00000292246.8:ENST00000350459.8:ENST00000396091.7:ENST00000414522.6:ENST00000451430.6:ENST00000427171.5:ENST00000428472.5	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.88145	3.95745	4.03345	0.0704058	0.0561985	0.184298	0.18407
chr3	87923382	87923482	1456319	0	+	0.3	(0.28,0.32]	chr3	153149	1009	INTRON	INTRON	HTR1F	ENSG00000179097.7	ENST00000319595.7	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.88145	3.95745	4.03345	0.0704058	0.0561985	0.184298	0.18407
chr3	99890727	99890827	1462629	0	+	0.32	(0.28,0.32]	chr3	153488	723	INTRON	INTRON	CMSS1	ENSG00000184220.12	ENST00000463526.1:ENST00000421999.8:ENST00000491299.5:ENST00000496116.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	22	2	3.88145	3.95745	4.03345	0.0704058	0.0561985	0.184298	0.18407
chr3	100301373	100301469	1465984	0	+	0.3125	(0.28,0.32]	chr3	153645	17	INTRON	INTRON	TBC1D23	ENSG00000036054.13	ENST00000394144.9:ENST00000344949.9:ENST00000486274.5:ENST00000475134.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	22	2	3.88145	3.95745	4.03345	0.0704058	0.0561985	0.184298	0.18407
chr3	123924108	123924208	1803787	0	-	0.32	(0.28,0.32]	chr3	181224	80	INTRON	INTRON	CCDC14	ENSG00000175455.16	ENST00000463996.1:ENST00000479903.5:ENST00000409697.8:ENST00000488653.6:ENST00000485727.5:ENST00000495381.5:ENST00000409657.5:ENST00000489746.5:ENST00000433542.7:ENST00000310351.8:ENST00000483247.1:ENST00000419247.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	22	2	3.88145	3.95745	4.03345	0.0704058	0.0561985	0.184298	0.18407
chr3	128769926	128770026	1497648	0	+	0.29	(0.28,0.32]	chr3	156330	432	INTRON	INTRON	RAB7A	ENSG00000075785.14	ENST00000676214.1:ENST00000675864.1:ENST00000675712.1:ENST00000676425.1:ENST00000490093.6:ENST00000675342.1:ENST00000265062.8:ENST00000674748.1:ENST00000493186.6:ENST00000482525.5:ENST00000491681.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	22	2	3.88145	3.95745	4.03345	0.0704058	0.0561985	0.184298	0.18407
chr3	191566321	191566417	1591599	0	+	0.302083	(0.28,0.32]	chr3	164688	5	EXON_LNCRNA	EXON_LNCRNA:INTRON	ENSG00000223812	ENSG00000223812.8	ENST00000657540.1:ENST00000439804.6:ENST00000663647.1:ENST00000668751.1:ENST00000666632.1:ENST00000664732.1:ENST00000641158.1:ENST00000664994.1:ENST00000669884.1:ENST00000642133.1:ENST00000656380.1:ENST00000641055.1:ENST00000662578.1:ENST00000661668.1:ENST00000658347.1:ENST00000661029.1:ENST00000651548.2:ENST00000669360.1:ENST00000653490.1:ENST00000656942.1:ENST00000666456.1:ENST00000668276.1:ENST00000671595.1:ENST00000660290.1:ENST00000664223.1:ENST00000667184.1	lncRNA	lncRNA	lncRNA	lncRNA	0	22	2	3.88145	3.95745	4.03345	0.0704058	0.0561985	0.184298	0.18407
chr5	62433098	62433197	2363206	0	+	0.282828	(0.28,0.32]	chr5	227852	102	INTRON	INTRON	IPO11	ENSG00000086200.17	ENST00000514647.5:ENST00000424533.5:ENST00000505902.5:ENST00000325324.11:ENST00000506200.5:ENST00000409296.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	22	2	3.88145	3.95745	4.03345	0.0704058	0.0561985	0.184298	0.18407
chr5	87273384	87273483	2410843	0	+	0.282828	(0.28,0.32]	chr5	232377	37	INTRON	INTRON	RASA1	ENSG00000145715.15	ENST00000274376.11:ENST00000515800.6:ENST00000456692.6:ENST00000506290.1:ENST00000512763.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	22	2	3.88145	3.95745	4.03345	0.0704058	0.0561985	0.184298	0.18407
chr6	45307603	45307703	3103283	0	-	0.32	(0.28,0.32]	chr6	290480	561	INTRON	INTRON	SUPT3H	ENSG00000196284.17	ENST00000475057.5:ENST00000371459.6:ENST00000371460.5:ENST00000459689.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	22	2	3.88145	3.95745	4.03345	0.0704058	0.0561985	0.184298	0.18407
chr6	154762998	154763098	3002113	0	+	0.31	(0.28,0.32]	chr6	280737	206	INTRON	INTRON	SCAF8	ENSG00000213079.10	ENST00000367186.7:ENST00000417268.3:ENST00000461219.5:ENST00000367178.8:ENST00000464628.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	22	2	3.88145	3.95745	4.03345	0.0704058	0.0561985	0.184298	0.18407
chr8	129857741	129857841	4062327	0	-	0.3	(0.28,0.32]	chr8	369766	16	INTRON	INTRON	CYRIB	ENSG00000153310.21	ENST00000694912.1:ENST00000519824.6:ENST00000523288.5:ENST00000519110.5:ENST00000401979.6:ENST00000523509.5:ENST00000522746.5:ENST00000517654.5:ENST00000522250.5:ENST00000519540.5:ENST00000522941.5:ENST00000517801.5:ENST00000519142.5:ENST00000518879.5:ENST00000522702.5:ENST00000521223.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	22	2	3.88145	3.95745	4.03345	0.0704058	0.0561985	0.184298	0.18407
chrX	12806251	12806350	7621927	0	+	0.292929	(0.28,0.32]	chrX	780193	65	INTRON	INTRON	PRPS2	ENSG00000101911.13	ENST00000380663.7:ENST00000398491.6:ENST00000380668.10:ENST00000489404.5:ENST00000461630.1	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.88145	3.95745	4.03345	0.0704058	0.0561985	0.184298	0.18407
chr5	43621507	43621607	2351107	0	+	0.3	(0.28,0.32]	chr5	226813	20	INTRON	INTRON	NNT	ENSG00000112992.18	ENST00000264663.9:ENST00000652986.1:ENST00000670904.1:ENST00000653251.1:ENST00000660752.1:ENST00000654405.1:ENST00000344920.9:ENST00000657973.1:ENST00000654931.1:ENST00000657172.1:ENST00000512996.6:ENST00000658729.1:ENST00000660676.1:ENST00000671668.1:ENST00000662525.1:ENST00000669601.1:ENST00000656666.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	158	2	3.69504	3.9573600000000004	4.21968	9.19088e-5	3.39708e-5	0.00853134	0.0046443
chr2	44360483	44360579	1111101	0	-	0.34375	(0.32,0.35]	chr2	119241	9	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS3_PROX:SS5_PROX:INTRON	PREPL	ENSG00000138078.16	ENST00000425263.5:ENST00000409411.6:ENST00000426481.5:ENST00000541738.5:ENST00000409957.5:ENST00000409936.5:ENST00000409272.5:ENST00000260648.10:ENST00000410081.5:ENST00000540817.1:ENST00000438314.1:ENST00000477410.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	76	2	2.40617	3.95735	5.50853	0.0040507	0.0010959399999999999	0.0578376	0.0304174
chr1	6196051	6196151	366164	0	-	0.28	[0,0.28]	chr1	43024	26	INTRON	INTRON	RPL22	ENSG00000116251.11	ENST00000234875.9:ENST00000480661.1:ENST00000497965.5:ENST00000471204.5:ENST00000465387.5:ENST00000462296.5:ENST00000465335.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	60	2	2.9385	3.957345	4.97619	0.0142776	0.00535756	0.0963703	0.0663076
chr17	28923608	28923708	6745948	0	-	0.39	(0.378,0.408]	chr17	662913	3	SS5_PROX	SS5_PROX:INTRON	PHF12	ENSG00000109118.14	ENST00000332830.9:ENST00000577226.5:ENST00000582436.5:ENST00000582655.5:ENST00000378879.7:ENST00000268756.7:ENST00000583524.5:ENST00000584822.1:ENST00000578900.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	45	2	3.33026	3.957265	4.58427	0.0128325	0.00189824	0.0926667	0.0402736
chr7	74240495	74240595	3555634	0	-	0.38	(0.378,0.408]	chr7	331003	4	SS3_PROX	SS3_PROX:INTRON	RFC2	ENSG00000049541.11	ENST00000352131.7:ENST00000055077.8:ENST00000621097.4:ENST00000497430.1:ENST00000494019.5:ENST00000470266.5:ENST00000480432.5:ENST00000479105.6:ENST00000491206.5:ENST00000493156.6:ENST00000463194.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	45	2	3.33026	3.957265	4.58427	0.0128325	0.00189824	0.0926667	0.0402736
chr8	42354521	42354621	3743759	0	+	0.39	(0.378,0.408]	chr8	348215	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	POLB	ENSG00000070501.12	ENST00000532157.5:ENST00000520008.5:ENST00000518925.5:ENST00000265421.9:ENST00000522610.5:ENST00000519771.5:ENST00000524208.5:ENST00000521290.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	45	2	3.33026	3.957265	4.58427	0.0128325	0.00189824	0.0926667	0.0402736
chr18	59335410	59335508	6980796	0	-	0.295918	(0.28,0.32]	chr18	690731	18	INTRON	INTRON	LMAN1	ENSG00000074695.6	ENST00000251047.6	protein_coding	protein_coding	protein_coding	protein_coding	1	54	2	2.51488	3.9572499999999997	5.39962	0.0380957	7.06751e-4	0.141678	0.0241881
chr10	68614922	68615022	4441433	0	+	0.36	(0.35,0.378]	chr10	409530	135	INTRON	INTRON	TET1	ENSG00000138336.9	ENST00000373644.5	protein_coding	protein_coding	protein_coding	protein_coding	4	85	2	1.77736	3.957115	6.13687	0.0225073	5.13037e-5	0.124921	0.0062158
chr8	73866668	73866768	3972138	0	-	0.26	[0,0.28]	chr8	364247	358	INTRON	INTRON	ENSG00000258677:UBE2W	ENSG00000258677.2:ENSG00000104343.21	ENST00000358757.5:ENST00000602593.6:ENST00000517608.5:ENST00000650817.1:ENST00000422906.6:ENST00000419880.7:ENST00000651945.1:ENST00000519277.5:ENST00000519255.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	55	2	3.2223	3.9571050000000003	4.69191	0.0269474	0.00422777	0.123442	0.0595466
chr20	38072014	38072114	7269268	0	+	0.33	(0.32,0.35]	chr20	738717	15	INTRON	INTRON	RPRD1B	ENSG00000101413.12	ENST00000462548.6:ENST00000373433.9:ENST00000449186.2:ENST00000618318.1:ENST00000614670.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	63	2	2.6297	3.9571000000000005	5.2845	0.00476699	0.00240071	0.0636201	0.0440612
chr18	56615373	56615466	6979666	0	-	0.333333	(0.32,0.35]	chr18	690528	4	INTRON	INTRON	TXNL1	ENSG00000091164.13	ENST00000217515.11:ENST00000590954.5:ENST00000587807.5:ENST00000586262.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	50	2	3.45772	3.957005	4.45629	0.0246089	0.00128487	0.12011	0.0333518
chr1	161165447	161165539	234040	0	+	0.5	(0.476,0.515]	chr1	28042	1	UTR3	UTR3:EXON_MRNA	USP21	ENSG00000143258.17	ENST00000289865.12:ENST00000368002.8:ENST00000368001.1:ENST00000487163.5:ENST00000696603.1:ENST00000493054.5:ENST00000485277.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	43	2	3.07422	3.95692	4.83962	0.00506023	0.00480934	0.0646039	0.0602209
chr10	86800389	86800489	4479835	0	+	0.5	(0.476,0.515]	chr10	412292	431	INTRON	INTRON	BMPR1A	ENSG00000107779.14	ENST00000638429.1:ENST00000372037.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	43	2	3.07422	3.95692	4.83962	0.00506023	0.00480934	0.0646039	0.0602209
chr21	42861098	42861196	7467723	0	-	0.5	(0.476,0.515]	chr21	760961	10	INTRON	INTRON	WDR4	ENSG00000160193.12	ENST00000330317.6:ENST00000476326.5:ENST00000398208.3:ENST00000492742.5:ENST00000479429.5:ENST00000463902.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	43	2	3.07422	3.95692	4.83962	0.00506023	0.00480934	0.0646039	0.0602209
chr7	2365916	2366016	3269740	0	+	0.49	(0.476,0.515]	chr7	303826	2	SS3_PROX	SS3_PROX:INTRON	EIF3B	ENSG00000106263.19	ENST00000431643.5:ENST00000360876.9:ENST00000397011.2:ENST00000463229.2:ENST00000468250.2:ENST00000463026.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	43	2	3.07422	3.95692	4.83962	0.00506023	0.00480934	0.0646039	0.0602209
chr10	43393429	43393529	4605347	0	-	0.51	(0.476,0.515]	chr10	424249	51	INTRON	INTRON	HNRNPF	ENSG00000169813.17	ENST00000356053.7:ENST00000357065.8:ENST00000544000.5:ENST00000443950.6:ENST00000682386.1:ENST00000337970.7:ENST00000477108.5:ENST00000498176.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	43	2	2.87879	3.9567249999999996	5.03466	0.00999149	0.00252065	0.0879541	0.0446195
chr22	50402303	50402403	7544784	0	+	0.49	(0.476,0.515]	chr22	771041	78	INTRON	INTRON	PPP6R2	ENSG00000100239.16	ENST00000359139.7:ENST00000395741.7:ENST00000612753.5:ENST00000395744.7:ENST00000216061.9	protein_coding	protein_coding	protein_coding	protein_coding	1	43	2	2.87879	3.9567249999999996	5.03466	0.00999149	0.00252065	0.0879541	0.0446195
chr4	109521726	109521826	2019465	0	+	0.51	(0.476,0.515]	chr4	200829	1	SS5_PROX	SS5_PROX:INTRON	SEC24B	ENSG00000138802.11	ENST00000504968.6:ENST00000399100.6:ENST00000265175.5	protein_coding	protein_coding	protein_coding	protein_coding	1	44	2	3.29939	3.956705	4.61402	0.00947755	0.00211868	0.0817766	0.0425644
chr1	38785135	38785235	426955	0	-	0.36	(0.35,0.378]	chr1	51804	4	SS3_PROX	SS3_PROX:INTRON	ENSG00000284632	ENSG00000284632.1	ENST00000641481.1:ENST00000641963.1	lncRNA	lncRNA	lncRNA	lncRNA	0	21	2	3.94291	3.956615	3.97032	0.0578667	0.0374229	0.167723	0.155878
chr11	9172138	9172235	4908124	0	-	0.360825	(0.35,0.378]	chr11	460057	15	EXON_MRNA	EXON_MRNA:INTRON	DENND5A	ENSG00000184014.9	ENST00000328194.8:ENST00000681203.1:ENST00000530780.2:ENST00000680358.1:ENST00000679999.1:ENST00000679458.1:ENST00000680470.1:ENST00000680599.1:ENST00000680554.1:ENST00000679745.1:ENST00000680252.1:ENST00000681425.1:ENST00000681158.1:ENST00000679460.1:ENST00000679568.1:ENST00000679446.1:ENST00000680294.1:ENST00000680742.1:ENST00000680885.1:ENST00000680576.1:ENST00000530044.5:ENST00000527700.5:ENST00000526707.5:ENST00000681173.1:ENST00000527896.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	21	2	3.94291	3.956615	3.97032	0.0578667	0.0374229	0.167723	0.155878
chr11	44071916	44072009	4781236	0	+	0.365591	(0.35,0.378]	chr11	442053	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ACCS:ENSG00000255165	ENSG00000110455.14:ENSG00000255165.1	ENST00000533208.5:ENST00000524990.5:ENST00000263776.9:ENST00000527603.5:ENST00000526577.5:ENST00000531268.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA:processed_transcript	0	21	2	3.94291	3.956615	3.97032	0.0578667	0.0374229	0.167723	0.155878
chr12	56293081	56293180	5334299	0	-	0.373737	(0.35,0.378]	chr12	509600	9	INTRON	INTRON	CS	ENSG00000062485.19	ENST00000351328.8:ENST00000549143.5:ENST00000548567.5:ENST00000542324.6:ENST00000548849.5:ENST00000549221.5:ENST00000546930.5:ENST00000548041.5:ENST00000550734.5:ENST00000551936.5:ENST00000551253.5:ENST00000552688.5:ENST00000551473.5:ENST00000547298.5:ENST00000551137.5:ENST00000550655.5:ENST00000551968.5:ENST00000550159.5:ENST00000551430.6:ENST00000552222.5:ENST00000547283.5:ENST00000550996.1:ENST00000550700.1:ENST00000551441.5:ENST00000550044.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	21	2	3.94291	3.956615	3.97032	0.0578667	0.0374229	0.167723	0.155878
chr12	131741224	131741324	5249395	0	+	0.37	(0.35,0.378]	chr12	499173	124	INTRON	INTRON	SFSWAP	ENSG00000061936.10	ENST00000261674.9:ENST00000538548.5:ENST00000535236.5:ENST00000541286.5:ENST00000535202.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	21	2	3.94291	3.956615	3.97032	0.0578667	0.0374229	0.167723	0.155878
chr14	21468852	21468952	5836410	0	-	0.36	(0.35,0.378]	chr14	554803	1	SS3_PROX	SS3_PROX:INTRON	RAB2B	ENSG00000129472.15	ENST00000397762.6:ENST00000649801.1:ENST00000417141.5:ENST00000461909.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	21	2	3.94291	3.956615	3.97032	0.0578667	0.0374229	0.167723	0.155878
chr14	60913232	60913332	5738515	0	+	0.37	(0.35,0.378]	chr14	544921	330	INTRON	INTRON	MNAT1	ENSG00000020426.11	ENST00000261245.9:ENST00000539616.6:ENST00000554002.5:ENST00000557134.1	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	3.94291	3.956615	3.97032	0.0578667	0.0374229	0.167723	0.155878
chr15	96131721	96131821	6261691	0	-	0.36	(0.35,0.378]	chr15	597570	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	NR2F2-AS1	ENSG00000247809.10	ENST00000620029.4:ENST00000560800.5	lncRNA	lncRNA	lncRNA	lncRNA	0	21	2	3.94291	3.956615	3.97032	0.0578667	0.0374229	0.167723	0.155878
chr16	11760137	11760233	6445307	0	-	0.354167	(0.35,0.378]	chr16	620869	4	INTRON	INTRON	ZC3H7A	ENSG00000122299.12	ENST00000396516.6:ENST00000571405.5:ENST00000355758.9:ENST00000570862.1:ENST00000571198.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	21	2	3.94291	3.956615	3.97032	0.0578667	0.0374229	0.167723	0.155878
chr17	57108248	57108348	6632583	0	+	0.37	(0.35,0.378]	chr17	647905	2	SS5_PROX	SS5_PROX:INTRON	AKAP1	ENSG00000121057.13	ENST00000337714.8:ENST00000571629.5:ENST00000621116.4:ENST00000572557.5:ENST00000481416.5:ENST00000539273.5:ENST00000314126.4:ENST00000576295.5:ENST00000573326.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	21	2	3.94291	3.956615	3.97032	0.0578667	0.0374229	0.167723	0.155878
chr17	64640880	64640980	6816923	0	-	0.36	(0.35,0.378]	chr17	673955	339	INTRON	INTRON	SMURF2	ENSG00000108854.16	ENST00000262435.14:ENST00000582081.5:ENST00000578386.5:ENST00000585301.1:ENST00000578200.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	21	2	3.94291	3.956615	3.97032	0.0578667	0.0374229	0.167723	0.155878
chr18	56625161	56625261	6979766	0	-	0.36	(0.35,0.378]	chr18	690546	3	INTRON	INTRON	TXNL1	ENSG00000091164.13	ENST00000217515.11:ENST00000590954.5:ENST00000587807.5:ENST00000586262.5:ENST00000587613.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	21	2	3.94291	3.956615	3.97032	0.0578667	0.0374229	0.167723	0.155878
chr19	2824971	2825069	6997823	0	+	0.357143	(0.35,0.378]	chr19	693868	15	INTRON	INTRON	ZNF554	ENSG00000172006.12	ENST00000317243.10:ENST00000590116.5:ENST00000591265.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	21	2	3.94291	3.956615	3.97032	0.0578667	0.0374229	0.167723	0.155878
chr2	178564733	178564832	931369	0	+	0.363636	(0.35,0.378]	chr2	102327	59	INTRON	INTRON	TTN-AS1	ENSG00000237298.10	ENST00000419746.5:ENST00000630096.2:ENST00000659121.1:ENST00000456053.5:ENST00000590773.6:ENST00000592600.6:ENST00000592630.5:ENST00000592750.5:ENST00000591332.5:ENST00000586707.6:ENST00000653807.1:ENST00000585451.5:ENST00000657023.1:ENST00000626117.2:ENST00000590807.5:ENST00000626954.2:ENST00000586452.5:ENST00000592689.5:ENST00000586831.5:ENST00000625480.2:ENST00000628826.2:ENST00000628296.2:ENST00000626138.2:ENST00000625536.2:ENST00000627564.2:ENST00000438095.1:ENST00000590932.5	lncRNA	lncRNA	lncRNA	lncRNA	0	21	2	3.94291	3.956615	3.97032	0.0578667	0.0374229	0.167723	0.155878
chr3	33635270	33635370	1653166	0	-	0.36	(0.35,0.378]	chr3	169635	25	INTRON	INTRON	CLASP2	ENSG00000163539.18	ENST00000399362.8:ENST00000682230.1:ENST00000468888.6:ENST00000359576.9:ENST00000650653.1:ENST00000480013.6:ENST00000461133.8:ENST00000635664.1:ENST00000313350.10:ENST00000487200.5:ENST00000333778.10:ENST00000485378.6:ENST00000496954.2:ENST00000476433.5:ENST00000482896.5:ENST00000498331.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	21	2	3.94291	3.956615	3.97032	0.0578667	0.0374229	0.167723	0.155878
chr3	113742151	113742250	1772339	0	-	0.353535	(0.35,0.378]	chr3	179465	10	INTRON	INTRON	NAA50	ENSG00000121579.14	ENST00000240922.8:ENST00000477813.5:ENST00000497525.5:ENST00000497255.1:ENST00000481432.5:ENST00000493900.5:ENST00000478020.1:ENST00000467022.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	21	2	3.94291	3.956615	3.97032	0.0578667	0.0374229	0.167723	0.155878
chr4	122973638	122973738	2036144	0	+	0.37	(0.35,0.378]	chr4	202346	210	INTRON	INTRON	SPATA5	ENSG00000145375.9	ENST00000675612.1:ENST00000274008.5:ENST00000674886.1:ENST00000422835.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	21	2	3.94291	3.956615	3.97032	0.0578667	0.0374229	0.167723	0.155878
chr5	96769342	96769441	2434703	0	+	0.353535	(0.35,0.378]	chr5	233947	5	EXON_MRNA	EXON_MRNA:INTRON	CAST	ENSG00000153113.24	ENST00000338252.7:ENST00000508830.5:ENST00000395812.6:ENST00000674702.1:ENST00000675179.1:ENST00000674984.1:ENST00000675663.1:ENST00000508608.6:ENST00000675267.1:ENST00000341926.7:ENST00000675266.1:ENST00000675614.1:ENST00000395813.5:ENST00000511049.5:ENST00000675858.1:ENST00000309190.9:ENST00000674587.1:ENST00000504465.5:ENST00000511782.5:ENST00000509903.5:ENST00000675033.1:ENST00000675479.1:ENST00000510756.6:ENST00000348386.7:ENST00000510500.5:ENST00000437034.6:ENST00000508579.5:ENST00000515663.5:ENST00000484552.6:ENST00000325674.11:ENST00000675275.1:ENST00000675185.1:ENST00000675734.1:ENST00000510098.1:ENST00000509529.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	21	2	3.94291	3.956615	3.97032	0.0578667	0.0374229	0.167723	0.155878
chr7	44657460	44657559	3314800	0	+	0.363636	(0.35,0.378]	chr7	307918	7	INTRON	INTRON	OGDH	ENSG00000105953.16	ENST00000439616.6:ENST00000443864.6:ENST00000449767.5:ENST00000447398.5:ENST00000419661.5:ENST00000222673.6:ENST00000444676.5	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	3.94291	3.956615	3.97032	0.0578667	0.0374229	0.167723	0.155878
chr7	101852252	101852352	3366711	0	+	0.36	(0.35,0.378]	chr7	315215	329	INTRON	INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000497815.5:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000607092.1:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000558469.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	21	2	3.94291	3.956615	3.97032	0.0578667	0.0374229	0.167723	0.155878
chr1	42673154	42673253	83903	0	+	0.525253	(0.515,0.57]	chr1	11005	41	INTRON	INTRON	PPIH	ENSG00000171960.12	ENST00000372550.6:ENST00000678038.1:ENST00000677900.1:ENST00000676675.1:ENST00000304979.8:ENST00000678193.1:ENST00000678333.1:ENST00000677307.1:ENST00000677356.1:ENST00000679245.1:ENST00000677312.1:ENST00000461351.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	40	2	3.31388	3.95651	4.59914	0.00616166	0.00174704	0.0676501	0.0386026
chr2	171078445	171078545	1263270	0	-	0.57	(0.515,0.57]	chr2	133896	116	INTRON	INTRON	TLK1	ENSG00000198586.14	ENST00000431350.7:ENST00000360843.7:ENST00000359766.7:ENST00000521943.5:ENST00000409443.6:ENST00000413010.5:ENST00000486857.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	40	2	3.31388	3.95651	4.59914	0.00616166	0.00174704	0.0676501	0.0386026
chr6	12023702	12023801	2814340	0	+	0.262626	[0,0.28]	chr6	264794	29	INTRON	INTRON	HIVEP1	ENSG00000095951.17	ENST00000491710.5:ENST00000487103.5:ENST00000379388.7:ENST00000627968.2:ENST00000541134.5:ENST00000442081.6:ENST00000478545.1:ENST00000484210.1	protein_coding	protein_coding	protein_coding	protein_coding	1	59	2	2.38757	3.9563800000000002	5.52519	0.0552962	8.21427e-4	0.165463	0.0261674
chr4	150919609	150919708	2270811	0	-	0.323232	(0.32,0.35]	chr4	220905	25	INTRON	INTRON	LRBA	ENSG00000198589.14	ENST00000357115.9:ENST00000651943.2:ENST00000510413.5:ENST00000651035.1:ENST00000507224.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	47	2	3.07975	3.95631	4.83287	0.0095071	0.00554235	0.0817766	0.0674105
chr8	63183362	63183461	3773137	0	+	0.343434	(0.32,0.35]	chr8	349936	76	INTRON	INTRON	YTHDF3	ENSG00000185728.17	ENST00000617200.1:ENST00000623280.3:ENST00000539294.6:ENST00000621957.4:ENST00000517371.5:ENST00000615676.1:ENST00000621413.4:ENST00000612880.4:ENST00000617952.4:ENST00000621890.4:ENST00000619337.4:ENST00000613853.4:ENST00000621820.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	47	2	3.07975	3.95631	4.83287	0.0095071	0.00554235	0.0817766	0.0674105
chr15	22846861	22846961	5976605	0	+	0.37	(0.35,0.378]	chr15	568409	12	INTRON	INTRON	NIPA2	ENSG00000140157.16	ENST00000560205.5:ENST00000398014.7:ENST00000359727.8:ENST00000674173.1:ENST00000560762.5:ENST00000337451.8:ENST00000559571.1:ENST00000674289.1:ENST00000674477.1:ENST00000398013.7:ENST00000674330.1:ENST00000560039.1:ENST00000539711.2:ENST00000561072.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	46	2	3.26794	3.9562549999999996	4.64457	0.012652	0.00257067	0.0926667	0.0466761
chr15	43387425	43387525	6011571	0	+	0.36	(0.35,0.378]	chr15	572516	7	INTRON	INTRON	TUBGCP4	ENSG00000137822.13	ENST00000564079.6:ENST00000260383.11:ENST00000561691.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	46	2	3.26794	3.9562549999999996	4.64457	0.012652	0.00257067	0.0926667	0.0466761
chr14	96356125	96356225	5966292	0	-	0.41	(0.408,0.44]	chr14	566862	84	INTRON	INTRON	ATG2B	ENSG00000066739.12	ENST00000359933.6	protein_coding	protein_coding	protein_coding	protein_coding	1	44	2	3.31257	3.95618	4.59979	0.0109537	0.00198621	0.0873034	0.0411469
chr20	35345490	35345589	7334529	0	-	0.30303	(0.28,0.32]	chr20	747141	15	UTR3	UTR3:EXON_MRNA:INTRON	UQCC1	ENSG00000101019.22	ENST00000374380.6:ENST00000374394.7:ENST00000374384.6:ENST00000359226.6:ENST00000349714.9:ENST00000457259.5:ENST00000374385.10:ENST00000453855.5:ENST00000397556.7:ENST00000424405.5:ENST00000497717.5:ENST00000443429.5:ENST00000438533.5:ENST00000397554.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	190	2	3.37351	3.9561650000000004	4.53882	3.84376e-5	1.93674e-5	0.00499873	0.00356815
chr7	152141821	152141921	3678267	0	-	0.44	(0.408,0.44]	chr7	341376	7	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000360104.8:ENST00000262189.11:ENST00000418061.2:ENST00000680877.1:ENST00000424877.6:ENST00000679560.1:ENST00000682040.1:ENST00000683640.1:ENST00000682116.1:ENST00000683120.1:ENST00000681923.1:ENST00000679393.1:ENST00000683200.1:ENST00000684768.1:ENST00000680029.1:ENST00000683337.1:ENST00000682629.1:ENST00000683178.1:ENST00000682137.1:ENST00000683502.1:ENST00000684261.1:ENST00000682283.1:ENST00000473186.5:ENST00000684649.1:ENST00000679882.1:ENST00000683621.1:ENST00000679567.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	43	2	2.89193	3.956105	5.02028	0.00950364	0.00303216	0.0863579	0.0493883
chr1	84659845	84659942	496461	0	-	0.42268	(0.408,0.44]	chr1	58854	10	INTRON	INTRON	SSX2IP	ENSG00000117155.17	ENST00000342203.8:ENST00000437941.6:ENST00000481102.5:ENST00000476905.6:ENST00000605755.5:ENST00000603677.1:ENST00000460500.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	69	2	2.22268	3.9559699999999998	5.68926	0.00770925	2.2853e-4	0.0784002	0.0138641
chr5	69370619	69370704	2380910	0	+	0.447059	(0.44,0.476]	chr5	229347	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RAD17	ENSG00000152942.19	ENST00000514066.6:ENST00000361732.6:ENST00000507927.5:ENST00000509734.5:ENST00000354868.10:ENST00000511349.1:ENST00000521422.5:ENST00000504177.5:ENST00000354312.7:ENST00000345306.10:ENST00000616683.4:ENST00000512785.5:ENST00000506564.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	75	2	2.32184	3.9558649999999997	5.58989	0.00609071	9.76499e-5	0.0676501	0.00830626
chr19	16627274	16627371	7150464	0	-	0.587629	(0.57,1]	chr19	722417	28	INTRON	INTRON	MED26	ENSG00000105085.11	ENST00000263390.8:ENST00000611692.4:ENST00000598608.1:ENST00000600060.1	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	3.34751	3.9555800000000003	4.56365	0.00129848	0.00122677	0.0333764	0.0320791
chr3	185762195	185762295	1885720	0	-	0.47	(0.44,0.476]	chr3	188573	635	INTRON	INTRON	IGF2BP2	ENSG00000073792.16	ENST00000382199.7:ENST00000346192.7:ENST00000457616.6:ENST00000421047.3:ENST00000461957.5:ENST00000493302.5:ENST00000466476.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	47	2	3.12799	3.9554600000000004	4.78293	0.0050635	0.00292033	0.0621733	0.0494641
chr11	85978448	85978537	5013909	0	-	0.191011	[0,0.28]	chr11	472922	5	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000530692.5:ENST00000630913.2:ENST00000529760.5:ENST00000528398.5:ENST00000532603.5:ENST00000356360.9:ENST00000529016.5:ENST00000526961.5:ENST00000526907.1:ENST00000530542.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	53	2	2.90797	3.9553000000000003	5.00263	0.013055	0.0118539	0.0962115	0.093385
chr12	8774076	8774173	5072753	0	+	0.278351	[0,0.28]	chr12	479573	4	UTR3	UTR3:EXON_MRNA:INTRON	RIMKLB	ENSG00000166532.16	ENST00000544257.5:ENST00000357529.7:ENST00000535829.6:ENST00000299673.5:ENST00000538135.5:ENST00000619374.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	53	2	2.90797	3.9553000000000003	5.00263	0.013055	0.0118539	0.0962115	0.093385
chr6	154758802	154758902	3002071	0	+	0.45	(0.44,0.476]	chr6	280737	164	INTRON	INTRON	SCAF8	ENSG00000213079.10	ENST00000367186.7:ENST00000417268.3:ENST00000461219.5:ENST00000367178.8:ENST00000464628.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	58	2	2.82351	3.95505	5.08659	0.00226401	0.00191049	0.0425438	0.0403772
chr6	34359368	34359468	3084441	0	-	0.35	(0.32,0.35]	chr6	288633	170	INTRON	INTRON	NUDT3:RPS10-NUDT3	ENSG00000272325.2:ENSG00000270800.3	ENST00000607016.2:ENST00000639725.1:ENST00000639877.1:ENST00000605528.2	protein_coding	protein_coding	protein_coding	protein_coding	1	49	2	2.48693	3.95499	5.42305	0.0338094	0.00149027	0.146709	0.035
chr10	21537257	21537355	4404436	0	+	0.408163	(0.378,0.408]	chr10	406413	21	INTRON	INTRON	MLLT10	ENSG00000078403.17	ENST00000651097.1:ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000377100.8:ENST00000377091.7:ENST00000650772.1:ENST00000651298.1:ENST00000471315.5:ENST00000652497.1:ENST00000495130.5:ENST00000377059.7:ENST00000621220.4:ENST00000476557.5:ENST00000462999.5:ENST00000430455.2:ENST00000479634.1:ENST00000480415.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	59	2	2.78867	3.954975	5.12128	0.00251746	0.00226991	0.0446195	0.0437013
chr12	96398592	96398692	5395267	0	-	0.36	(0.35,0.378]	chr12	514464	1	SS5_PROX	SS5_PROX:INTRON	CDK17	ENSG00000059758.8	ENST00000261211.8:ENST00000543119.6:ENST00000542666.5:ENST00000551816.5:ENST00000552496.5:ENST00000552262.1	protein_coding	protein_coding	protein_coding	protein_coding	1	45	2	2.86451	3.954815	5.04512	0.0109111	0.00393262	0.0923273	0.0548259
chr3	52704428	52704525	1700897	0	-	0.340206	(0.32,0.35]	chr3	175135	1	SS5_PROX	SS5_PROX:INTRON	GLT8D1	ENSG00000016864.19	ENST00000266014.11:ENST00000478968.6:ENST00000491606.5:ENST00000484163.5:ENST00000497436.5:ENST00000497953.5:ENST00000487642.5:ENST00000464705.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	51	2	2.84812	3.9547550000000005	5.06139	0.0147575	0.00179023	0.0983813	0.0392749
chr2	70283179	70283279	1152501	0	-	0.4	(0.378,0.408]	chr2	123121	11	INTRON	INTRON	SNRPG	ENSG00000143977.14	ENST00000272348.7:ENST00000429728.1:ENST00000482975.6:ENST00000438261.5:ENST00000454893.1:ENST00000413456.6:ENST00000449935.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	44	2	3.17089	3.95464	4.73839	0.00837252	0.00357279	0.0774402	0.0548435
chr1	147167352	147167439	542316	0	-	0.298851	(0.28,0.32]	chr1	63605	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PRKAB2	ENSG00000131791.8	ENST00000254101.4:ENST00000474939.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	50	2	3.17453	3.954635	4.73474	0.0162835	0.00429297	0.101453	0.0599065
chr1	171506768	171506867	253427	0	+	0.30303	(0.28,0.32]	chr1	30096	207	INTRON	INTRON	PRRC2C	ENSG00000117523.18	ENST00000647382.2:ENST00000367742.7:ENST00000476522.5:ENST00000338920.8:ENST00000467601.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	50	2	3.17453	3.954635	4.73474	0.0162835	0.00429297	0.101453	0.0599065
chr17	78796540	78796639	6845931	0	-	0.464646	(0.44,0.476]	chr17	677358	10	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:SS5_PROX:INTRON	USP36	ENSG00000055483.20	ENST00000588130.5:ENST00000587010.5:ENST00000591052.5:ENST00000589225.5:ENST00000587379.1:ENST00000592231.6:ENST00000449938.7:ENST00000592326.1:ENST00000542802.7:ENST00000693020.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	58	2	2.33272	3.954635	5.57655	0.0129984	3.3967e-4	0.0991656	0.0170719
chr4	24541210	24541291	2118569	0	-	0.283951	(0.28,0.32]	chr4	209211	3	SS3_PROX	SS3_PROX:INTRON	DHX15	ENSG00000109606.13	ENST00000336812.5:ENST00000503562.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	50	2	3.17453	3.954635	4.73474	0.0162835	0.00429297	0.101453	0.0599065
chr1	40771013	40771105	83177	0	+	0.23913	[0,0.28]	chr1	10806	3	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	NFYC	ENSG00000066136.21	ENST00000427410.6:ENST00000447388.8:ENST00000425457.6:ENST00000456393.6:ENST00000372654.5:ENST00000372653.5:ENST00000372652.5:ENST00000440226.7:ENST00000308733.9:ENST00000414185.1:ENST00000488635.1:ENST00000496608.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	72	2	2.24546	3.9545950000000003	5.66373	0.0206502	0.00196371	0.122348	0.0401678
chr1	243295184	243295283	345261	0	+	0.40404	(0.378,0.408]	chr1	40225	13	INTRON	INTRON	SDCCAG8	ENSG00000054282.16	ENST00000366541.8:ENST00000482234.1:ENST00000476722.6:ENST00000435549.1:ENST00000496361.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	59	2	2.35527	3.954575	5.55388	0.0121511	5.01023e-4	0.0963966	0.0206993
chr2	17684063	17684163	1073380	0	-	0.41	(0.408,0.44]	chr2	114520	3	SS3_PROX	SS3_PROX:INTRON	SMC6	ENSG00000163029.16	ENST00000351948.8:ENST00000448223.7:ENST00000402989.5	protein_coding	protein_coding	protein_coding	protein_coding	1	49	2	3.28852	3.954305	4.62009	0.00504155	0.00287185	0.0646039	0.0474836
chr8	116658342	116658436	4033250	0	-	0.404255	(0.378,0.408]	chr8	368042	2	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	EIF3H	ENSG00000147677.12	ENST00000521861.6:ENST00000276682.8:ENST00000518949.5:ENST00000518995.5:ENST00000522800.5:ENST00000518034.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	44	2	2.78705	3.9541649999999997	5.12128	0.0135539	0.00251746	0.101363	0.0446195
chr2	144478887	144478987	1241391	0	-	0.3	(0.28,0.32]	chr2	131724	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ZEB2	ENSG00000169554.23	ENST00000636471.1:ENST00000627532.3:ENST00000638128.1:ENST00000637304.1:ENST00000636179.1:ENST00000636820.1:ENST00000419938.5:ENST00000409487.7:ENST00000636732.2:ENST00000636026.2:ENST00000675069.1:ENST00000689298.1:ENST00000539609.7:ENST00000558170.6:ENST00000303660.8:ENST00000427902.5:ENST00000637267.2:ENST00000392861.6:ENST00000431672.4:ENST00000409211.5:ENST00000465308.5:ENST00000434448.5:ENST00000472146.5:ENST00000461784.3:ENST00000476394.5:ENST00000637591.2:ENST00000479735.1:ENST00000453352.5:ENST00000435831.5:ENST00000444559.5:ENST00000630572.2:ENST00000484313.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	50	2	2.60656	3.954045	5.30153	0.0256827	0.00332518	0.133676	0.0512081
chr20	4005956	4006056	7309312	0	-	0.36	(0.35,0.378]	chr20	744300	312	INTRON	INTRON	RNF24	ENSG00000101236.17	ENST00000336095.10:ENST00000358395.11:ENST00000545616.2	protein_coding	protein_coding	protein_coding	protein_coding	1	50	2	3.08431	3.95404	4.82377	0.0065853	0.00325499	0.0701901	0.0524329
chrX	41341865	41341948	7645732	0	+	0.325301	(0.32,0.35]	chrX	782506	4	EXON_MRNA	EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DDX3X	ENSG00000215301.11	ENST00000625837.2:ENST00000626301.2:ENST00000629785.2:ENST00000630255.2:ENST00000630370.2:ENST00000630858.2:ENST00000629496.3:ENST00000478993.5:ENST00000457138.7:ENST00000644876.2:ENST00000399959.7:ENST00000644074.1:ENST00000645338.1:ENST00000646196.1:ENST00000642793.1:ENST00000646940.1:ENST00000644307.1:ENST00000645561.1:ENST00000645080.1:ENST00000642597.1:ENST00000642722.1:ENST00000644109.1:ENST00000644958.1:ENST00000646122.1:ENST00000644513.1:ENST00000645589.1:ENST00000441189.4:ENST00000646822.1:ENST00000631641.2:ENST00000615742.4:ENST00000647219.1:ENST00000646223.1:ENST00000643963.1:ENST00000646319.1:ENST00000642624.1:ENST00000542215.5:ENST00000644073.1:ENST00000644677.1:ENST00000615313.5:ENST00000642322.1:ENST00000622198.5:ENST00000645120.1:ENST00000646107.1:ENST00000646627.1:ENST00000645253.1:ENST00000642589.1:ENST00000645380.1:ENST00000646390.1:ENST00000642424.1:ENST00000642161.1:ENST00000645574.1:ENST00000646679.1:ENST00000642763.1:ENST00000644260.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	244	2	3.18097	3.95381	4.72665	5.99113e-6	4.78532e-6	0.0017156	0.00161509
chr4	1733187	1733286	1910254	0	+	0.383838	(0.378,0.408]	chr4	191592	15	INTRON	INTRON	TACC3	ENSG00000013810.21	ENST00000651472.1:ENST00000612220.5:ENST00000484651.5:ENST00000313288.9:ENST00000652770.1:ENST00000651251.1:ENST00000650779.1:ENST00000470136.2:ENST00000651817.1:ENST00000466077.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	64	2	2.16303	3.953705	5.74438	0.0252473	5.15539e-5	0.12011	0.00585477
chr4	6957928	6958028	1923102	0	+	0.41	(0.408,0.44]	chr4	193067	32	INTRON	INTRON	TBC1D14	ENSG00000132405.19	ENST00000448507.5:ENST00000409757.9:ENST00000410031.5	protein_coding	protein_coding	protein_coding	protein_coding	2	96	2	3.56057	3.953595	4.34662	9.67143e-4	9.84598e-6	0.0282401	0.00227957
chr6	41930895	41930988	2864633	0	+	0.44086	(0.44,0.476]	chr6	270931	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	BYSL	ENSG00000112578.10	ENST00000230340.9:ENST00000489290.1:ENST00000372996.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	51	2	3.4718	3.953525	4.43525	0.00897296	0.00136358	0.0849778	0.0336321
chr1	212313666	212313766	308359	0	+	0.32	(0.28,0.32]	chr1	35568	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	PPP2R5A	ENSG00000066027.12	ENST00000261461.7:ENST00000537030.3:ENST00000498129.6:ENST00000479259.1:ENST00000498123.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	49	2	2.91832	3.95352	4.98872	0.0102484	0.00838468	0.089002	0.0774402
chr17	6891426	6891526	6717117	0	-	0.32	(0.28,0.32]	chr17	658643	97	INTRON	INTRON	ALOX12-AS1	ENSG00000215067.11	ENST00000653385.1:ENST00000659418.1:ENST00000572385.5:ENST00000570562.5:ENST00000575889.5	lncRNA	lncRNA	lncRNA	lncRNA	1	49	2	2.86113	3.95346	5.04579	0.0122675	0.00714672	0.0969406	0.0723634
chr12	120150543	120150593	5432776	0	-	0.42	(0.408,0.44]	chr12	519179	1	INTRON	INTRON	GCN1	ENSG00000089154.11	ENST00000300648.7	protein_coding	protein_coding	protein_coding	protein_coding	1	46	2	2.78122	3.95345	5.12568	0.015812	7.90919e-4	0.101453	0.0258324
chr10	68070008	68070105	4637895	0	-	0.381443	(0.378,0.408]	chr10	426440	25	UTR3	UTR3:EXON_MRNA:INTRON	HERC4	ENSG00000148634.16	ENST00000373700.9:ENST00000412272.6:ENST00000395198.7:ENST00000473533.6:ENST00000427635.6:ENST00000513996.5:ENST00000395185.7:ENST00000505760.5:ENST00000492996.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	70	2	2.31181	3.953315	5.59482	0.00548372	4.23783e-4	0.0671431	0.0189958
chr16	74571611	74571711	6524977	0	-	0.53	(0.515,0.57]	chr16	631842	84	INTRON	INTRON	GLG1	ENSG00000090863.12	ENST00000205061.9:ENST00000422840.7:ENST00000447066.6:ENST00000562090.5:ENST00000567951.5:ENST00000627032.2:ENST00000565260.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	63	2	2.57697	3.9532700000000003	5.32957	0.00153959	4.06834e-4	0.0362709	0.0185763
chr11	68086920	68087020	4972250	0	-	0.45	(0.44,0.476]	chr11	469428	40	INTRON	INTRON	CHKA	ENSG00000110721.12	ENST00000265689.9:ENST00000356135.9:ENST00000528235.5:ENST00000531341.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	43	2	3.14559	3.9531349999999996	4.76068	0.00653414	0.00384923	0.0699952	0.0562562
chr4	82974823	82974922	2180887	0	-	0.444444	(0.44,0.476]	chr4	214507	40	INTRON	INTRON	LIN54	ENSG00000189308.11	ENST00000340417.8:ENST00000510877.5:ENST00000446851.6:ENST00000442461.6:ENST00000510557.5:ENST00000508171.5:ENST00000506560.5:ENST00000505397.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	43	2	3.14559	3.9531349999999996	4.76068	0.00653414	0.00384923	0.0699952	0.0562562
chr6	20857971	20858071	2831626	0	+	0.49	(0.476,0.515]	chr6	265679	114	INTRON	INTRON	CDKAL1	ENSG00000145996.11	ENST00000274695.8:ENST00000378610.1	protein_coding	protein_coding	protein_coding	protein_coding	1	46	2	2.56033	3.9531099999999997	5.34589	0.0287634	3.224e-4	0.127066	0.0159645
chr21	43895678	43895778	7414095	0	+	0.49	(0.476,0.515]	chr21	755692	127	INTRON	INTRON	AGPAT3	ENSG00000160216.21	ENST00000291572.13:ENST00000448287.5:ENST00000398061.5	protein_coding	protein_coding	protein_coding	protein_coding	1	48	2	3.29074	3.952965	4.61519	0.00528365	0.00272563	0.0656295	0.0467523
chr2	230732049	230732149	1030351	0	+	0.52	(0.515,0.57]	chr2	110002	176	INTRON	INTRON	CAB39	ENSG00000135932.12	ENST00000258418.10:ENST00000409788.7:ENST00000410084.7	protein_coding	protein_coding	protein_coding	protein_coding	3	109	2	3.49683	3.9528250000000003	4.40882	6.73116e-5	4.58078e-6	0.00723304	0.00144313
chr7	97143018	97143118	3357214	0	+	0.5	(0.476,0.515]	chr7	313217	2	SS5_PROX	SS5_PROX:INTRON	SDHAF3	ENSG00000196636.8	ENST00000432641.3:ENST00000360382.4:ENST00000479853.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	61	2	2.365	3.952805	5.54061	0.0128901	1.30462e-4	0.0926667	0.00983066
chr16	68037405	68037505	6369713	0	+	0.45	(0.44,0.476]	chr16	612075	100	INTRON	INTRON	DUS2	ENSG00000167264.18	ENST00000571081.6:ENST00000570709.6:ENST00000575677.5:ENST00000576994.5:ENST00000566306.5:ENST00000358896.10:ENST00000564975.5:ENST00000568099.6:ENST00000565263.6:ENST00000567100.5:ENST00000432752.5:ENST00000569289.5:ENST00000564781.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	43	2	2.81896	3.952775	5.08659	0.0120766	0.00226401	0.0962311	0.0425438
chr22	38504662	38504762	7588077	0	-	0.42	(0.408,0.44]	chr22	776771	30	INTRON	INTRON	DDX17	ENSG00000100201.23	ENST00000403230.3:ENST00000396821.8:ENST00000216019.11:ENST00000432525.5:ENST00000467279.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	69	2	2.46587	3.952635	5.4394	0.00280622	6.50925e-4	0.0488779	0.0232863
chr8	38202538	38202637	3735339	0	+	0.50505	(0.476,0.515]	chr8	347049	94	INTRON	INTRON	BAG4	ENSG00000156735.11	ENST00000521282.1:ENST00000432471.6:ENST00000287322.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	58	2	2.81076	3.952495	5.09423	0.00204588	0.00203568	0.0417667	0.04086
chr10	73020789	73020889	4647074	0	-	0.41	(0.408,0.44]	chr10	427494	35	INTRON	INTRON	P4HA1	ENSG00000122884.13	ENST00000394890.7:ENST00000307116.6:ENST00000373008.6:ENST00000440381.5:ENST00000263556.3	protein_coding	protein_coding	protein_coding	protein_coding	4	79	2	2.29426	3.95247	5.61068	0.00277178	3.21002e-4	0.04874	0.0165409
chrX	77777355	77777455	7847382	0	-	0.35	(0.32,0.35]	chrX	800211	598	INTRON	INTRON	ATRX	ENSG00000085224.23	ENST00000373344.11:ENST00000395603.7:ENST00000480283.5:ENST00000624166.3:ENST00000624032.3:ENST00000623321.3:ENST00000624668.3:ENST00000622960.1:ENST00000624193.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	69	2	2.1362	3.9524	5.7686	0.0291083	8.9843e-5	0.128029	0.0079464
chr7	75449815	75449915	3558565	0	-	0.53	(0.515,0.57]	chr7	331545	72	INTRON	INTRON	POM121C	ENSG00000272391.6	ENST00000615331.5:ENST00000398379.2	protein_coding	protein_coding	protein_coding	protein_coding	1	43	2	2.43589	3.95235	5.46881	0.0370871	9.03271e-5	0.139194	0.00795396
chr13	110973652	110973751	5544124	0	+	0.424242	(0.408,0.44]	chr13	529715	72	INTRON	INTRON	LINC00431	ENSG00000225760.2	ENST00000440735.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	1	46	2	2.71911	3.952235	5.18536	0.0189489	6.17381e-4	0.108861	0.0223951
chr7	149726360	149726460	3446319	0	+	0.42	(0.408,0.44]	chr7	321574	3	SS5_PROX	SS5_PROX:INTRON	KRBA1	ENSG00000133619.18	ENST00000496259.6:ENST00000319551.12:ENST00000485033.6:ENST00000621069.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	46	2	2.71911	3.952235	5.18536	0.0189489	6.17381e-4	0.108861	0.0223951
chr8	126267802	126267902	4051310	0	-	0.42	(0.408,0.44]	chr8	369353	1544	INTRON	INTRON	LINC00861	ENSG00000245164.9	ENST00000651482.1	lncRNA	lncRNA	lncRNA	lncRNA	1	46	2	2.84077	3.9521	5.06343	0.0132196	0.00101725	0.0940535	0.0293497
chr1	246049656	246049756	676127	0	-	0.37	(0.35,0.378]	chr1	79713	612	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000391836.3:ENST00000464398.1:ENST00000453676.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	76	2	1.82281	3.9519599999999997	6.08111	0.0316938	6.68078e-5	0.144635	0.00720358
chr19	38682120	38682220	7066073	0	+	0.3	(0.28,0.32]	chr19	705486	335	INTRON	INTRON	ACTN4	ENSG00000130402.13	ENST00000252699.7:ENST00000588618.5:ENST00000440400.2:ENST00000424234.7:ENST00000589528.1:ENST00000390009.7:ENST00000495553.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	55	2	3.00395	3.951785	4.89962	0.0101329	0.00425206	0.0850389	0.0595557
chr3	100404736	100404835	1466550	0	+	0.323232	(0.32,0.35]	chr3	153757	19	INTRON	INTRON	LNP1	ENSG00000206535.8	ENST00000466996.5:ENST00000383693.8:ENST00000489752.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	52	2	2.37794	3.9517800000000003	5.52562	0.0498601	2.76065e-4	0.156383	0.0147997
chr1	168049894	168049994	249642	0	+	0.48	(0.476,0.515]	chr1	29642	43	INTRON	INTRON	DCAF6	ENSG00000143164.16	ENST00000432587.6:ENST00000367843.7:ENST00000367840.4:ENST00000312263.10:ENST00000489398.1:ENST00000478668.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	70	2	2.01953	3.9514500000000004	5.88337	0.0163662	7.59355e-5	0.109586	0.00777694
chr4	105413728	105413828	2216073	0	-	0.26	[0,0.28]	chr4	217232	74	INTRON	INTRON	PPA2	ENSG00000138777.20	ENST00000341695.10:ENST00000348706.9:ENST00000509031.5:ENST00000351450.10:ENST00000354147.7:ENST00000432483.6:ENST00000515567.5:ENST00000503171.5:ENST00000510015.5:ENST00000509426.5:ENST00000508518.5:ENST00000514209.5:ENST00000506815.5:ENST00000457404.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	53	2	2.95729	3.9514500000000004	4.94561	0.0150263	0.0101824	0.0994339	0.089002
chr1	37551258	37551356	424238	0	-	0.295918	(0.28,0.32]	chr1	51285	19	INTRON	INTRON	SNIP1	ENSG00000163877.11	ENST00000296215.8:ENST00000468040.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	66	2	2.55521	3.95143	5.34765	0.0067419	0.00287138	0.0739405	0.0474836
chr7	77754434	77754533	3343652	0	+	0.282828	(0.28,0.32]	chr7	311446	40	INTRON	INTRON	RSBN1L	ENSG00000187257.16	ENST00000334955.13:ENST00000445288.5	protein_coding	protein_coding	protein_coding	protein_coding	2	66	2	2.55521	3.95143	5.34765	0.0067419	0.00287138	0.0739405	0.0474836
chr16	22448922	22449021	6322056	0	+	0.575758	(0.57,1]	chr16	605299	108	INTRON	INTRON	SMG1P1	ENSG00000237296.10	ENST00000446662.5:ENST00000381231.5:ENST00000309865.11:ENST00000691795.1:ENST00000308347.10:ENST00000687936.1:ENST00000691423.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	3	70	2	3.93336	3.951355	3.96935	4.27649e-5	1.31607e-6	0.00555805	6.75311e-4
chr16	30718767	30718866	6338860	0	+	0.313131	(0.28,0.32]	chr16	607790	19	INTRON	INTRON	SRCAP	ENSG00000080603.17	ENST00000262518.9:ENST00000395059.6:ENST00000483083.3	protein_coding	protein_coding	protein_coding	protein_coding	1	49	2	2.97333	3.95131	4.92929	0.0098607	0.00857834	0.0838128	0.083729
chr16	14991467	14991566	6305300	0	+	0.313131	(0.28,0.32]	chr16	603267	142	INTRON	INTRON	PDXDC1	ENSG00000179889.20	ENST00000563679.5:ENST00000563667.5:ENST00000563522.5:ENST00000535621.6:ENST00000396410.9:ENST00000566426.1:ENST00000455313.6:ENST00000562119.5:ENST00000570001.5:ENST00000569715.5:ENST00000627450.2:ENST00000565362.5:ENST00000567306.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	66	2	2.38391	3.951295	5.51868	0.0122525	0.00162747	0.0969406	0.0367966
chr5	126832293	126832393	2479741	0	+	0.42	(0.408,0.44]	chr5	236758	2	SS3_PROX	SS3_PROX:INTRON	LMNB1	ENSG00000113368.12	ENST00000460265.5:ENST00000261366.10:ENST00000504788.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	50	2	3.37162	3.95125	4.53088	0.00669275	0.00208674	0.0738715	0.0411801
chr4	129038461	129038540	2240732	0	-	0.278481	[0,0.28]	chr4	219296	4	SS3_PROX	SS3_PROX:INTRON	SCLT1	ENSG00000151466.12	ENST00000651532.1:ENST00000281142.10:ENST00000503215.5:ENST00000439369.6:ENST00000506368.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	53	2	2.69187	3.951205	5.21054	0.0221271	0.00758653	0.123903	0.0749063
chr7	157208534	157208633	3454651	0	+	0.191919	[0,0.28]	chr7	322975	2	INTRON	INTRON	UBE3C	ENSG00000009335.18	ENST00000348165.10:ENST00000469336.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	53	2	2.69187	3.951205	5.21054	0.0221271	0.00758653	0.123903	0.0749063
chr12	68824758	68824856	5163155	0	+	0.316327	(0.28,0.32]	chr12	488933	1	SS5_PROX	SS5_PROX:INTRON	MDM2	ENSG00000135679.27	ENST00000258149.11:ENST00000393412.7:ENST00000311420.13:ENST00000393417.8:ENST00000258148.11:ENST00000539479.6:ENST00000523991.5:ENST00000543323.5:ENST00000393415.7:ENST00000393416.7:ENST00000481186.6:ENST00000545204.2:ENST00000544561.6:ENST00000665020.1:ENST00000666617.1:ENST00000671567.1:ENST00000393410.5:ENST00000496959.5:ENST00000299252.8:ENST00000360430.6:ENST00000517852.5:ENST00000546048.5:ENST00000540352.5:ENST00000542502.5:ENST00000537182.5:ENST00000536089.5:ENST00000393413.7:ENST00000350057.9:ENST00000348801.7:ENST00000478070.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	49	2	2.80157	3.95113	5.10069	0.0147132	0.00610574	0.106558	0.0676501
chr3	183761006	183761106	1580933	0	+	0.3	(0.28,0.32]	chr3	163093	1	SS3_PROX	SS3_PROX:INTRON	YEATS2	ENSG00000163872.16	ENST00000305135.10	protein_coding	protein_coding	protein_coding	protein_coding	1	49	2	2.80157	3.95113	5.10069	0.0147132	0.00610574	0.106558	0.0676501
chr16	328067	328167	6426610	0	-	0.48	(0.476,0.515]	chr16	617500	130	INTRON	INTRON	AXIN1	ENSG00000103126.15	ENST00000262320.8:ENST00000461023.5:ENST00000354866.7:ENST00000481769.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	43	2	3.13389	3.95108	4.76827	0.00600704	0.00405473	0.0674604	0.0578376
chr19	10676762	10676862	7013444	0	+	0.5	(0.476,0.515]	chr19	696781	2	SS3_PROX	SS3_PROX:INTRON	ILF3	ENSG00000129351.17	ENST00000449870.5:ENST00000587928.5:ENST00000407004.7:ENST00000589998.5:ENST00000589600.5:ENST00000590009.5:ENST00000587505.5:ENST00000589052.5:ENST00000250241.12:ENST00000590261.5:ENST00000588657.5:ENST00000592763.5:ENST00000587840.5:ENST00000589416.5:ENST00000585835.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	43	2	3.13389	3.95108	4.76827	0.00600704	0.00405473	0.0674604	0.0578376
chr19	38709902	38709976	7066356	0	+	0.581081	(0.57,1]	chr19	705520	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ACTN4	ENSG00000130402.13	ENST00000252699.7:ENST00000588618.5:ENST00000440400.2:ENST00000424234.7:ENST00000589528.1:ENST00000390009.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	54	2	3.69986	3.950985	4.20211	1.9698e-4	9.40529e-6	0.0122531	0.00236268
chr19	24063715	24063815	7044165	0	+	0.36	(0.35,0.378]	chr19	702367	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	ENSG00000268362:ZNF254	ENSG00000268362.6:ENSG00000213096.11	ENST00000664647.1:ENST00000613065.4:ENST00000666101.1:ENST00000653003.1:ENST00000666488.1:ENST00000594934.6:ENST00000654353.1:ENST00000662140.1:ENST00000668060.1:ENST00000660137.1:ENST00000652968.1:ENST00000670905.1:ENST00000658858.1:ENST00000654594.1:ENST00000654372.1:ENST00000652837.1:ENST00000654611.1:ENST00000597683.1:ENST00000671141.1:ENST00000653308.1:ENST00000661386.1:ENST00000668656.1:ENST00000663903.1:ENST00000668169.1:ENST00000663458.1:ENST00000662903.1:ENST00000665638.1:ENST00000668701.1:ENST00000655664.1:ENST00000666861.1:ENST00000664627.1:ENST00000661650.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	6	101	2	1.6344	3.9509600000000002	6.26752	0.0189573	2.71494e-5	0.118501	0.00430583
chr19	48748602	48748701	7199248	0	-	0.464646	(0.44,0.476]	chr19	729870	7	UTR3	UTR3:EXON_MRNA	FUT1	ENSG00000174951.12	ENST00000645652.2	protein_coding	protein_coding	protein_coding	protein_coding	2	57	2	2.59888	3.9508900000000002	5.3029	0.00487719	0.00102616	0.0640618	0.029231300000000002
chr6	129624452	129624552	3217948	0	-	0.47	(0.44,0.476]	chr6	299107	52	INTRON	INTRON	ARHGAP18	ENSG00000146376.11	ENST00000368149.3	protein_coding	protein_coding	protein_coding	protein_coding	2	57	2	2.59888	3.9508900000000002	5.3029	0.00487719	0.00102616	0.0640618	0.029231300000000002
chr5	139149037	139149137	2734966	0	-	0.47	(0.44,0.476]	chr5	257596	112	INTRON	INTRON	SIL1	ENSG00000120725.13	ENST00000394817.7:ENST00000265195.9:ENST00000509534.5:ENST00000508639.5:ENST00000507002.5:ENST00000505830.5:ENST00000505353.1:ENST00000504666.5:ENST00000509400.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	57	2	2.54944	3.950855	5.35227	0.00591346	8.47974e-4	0.0694038	0.0267232
chr8	90546294	90546394	3795569	0	+	0.48	(0.476,0.515]	chr8	351838	69	INTRON	INTRON	LINC00534	ENSG00000253394.7	ENST00000655523.1:ENST00000658299.1:ENST00000662692.1:ENST00000667296.1:ENST00000653734.1:ENST00000654785.1:ENST00000524361.5	lncRNA	lncRNA	lncRNA	lncRNA	1	43	2	2.80729	3.95076	5.09423	0.0126008	0.00204588	0.0980703	0.04086
chr7	73509359	73509457	3554970	0	-	0.367347	(0.35,0.378]	chr7	330807	5	INTRON	INTRON	BAZ1B	ENSG00000009954.11	ENST00000339594.9:ENST00000404251.1	protein_coding	protein_coding	protein_coding	protein_coding	4	84	2	2.36666	3.950685	5.53471	0.00212276	6.96925e-4	0.0426185	0.024224
chr8	123393695	123393794	4042616	0	-	0.515152	(0.476,0.515]	chr8	368789	127	INTRON	INTRON	ATAD2	ENSG00000156802.13	ENST00000287394.10:ENST00000517666.5:ENST00000521903.5:ENST00000519124.5:ENST00000521496.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	192	2	2.81334	3.9506	5.08786	8.67675e-5	1.8753e-7	0.00783027	2.15618e-4
chr13	19708944	19709041	5552199	0	-	0.484536	(0.476,0.515]	chr13	530690	28	INTRON	INTRON	PSPC1	ENSG00000121390.19	ENST00000471658.5:ENST00000492741.5:ENST00000635562.1:ENST00000338910.9:ENST00000619300.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	189	2	3.04687	3.95057	4.85427	1.97208e-5	8.71164e-7	0.00342281	5.74603e-4
chr19	32618401	32618490	7169029	0	-	0.393258	(0.378,0.408]	chr19	724374	4	INTRON	INTRON	ANKRD27	ENSG00000105186.16	ENST00000306065.9	protein_coding	protein_coding	protein_coding	protein_coding	4	80	2	2.18994	3.950525	5.71111	0.00448961	2.59738e-4	0.0612035	0.0148796
chr3	154279287	154279387	1843062	0	-	0.38	(0.378,0.408]	chr3	185358	9	EXON_MRNA	EXON_MRNA:INTRON	DHX36	ENSG00000174953.14	ENST00000496811.6:ENST00000308361.10:ENST00000329463.9:ENST00000479934.5:ENST00000481941.5:ENST00000460695.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	130	2	3.81577	3.950525	4.08528	9.30621e-5	9.40567e-6	0.00857086	0.00222163
chr1	155508831	155508931	562352	0	-	0.44	(0.408,0.44]	chr1	67101	260	INTRON	INTRON	ASH1L	ENSG00000116539.14	ENST00000676814.1:ENST00000392403.8:ENST00000368346.7:ENST00000677213.1:ENST00000678117.1:ENST00000679097.1:ENST00000679333.1:ENST00000677042.1:ENST00000678699.1:ENST00000677825.1:ENST00000679133.1:ENST00000548830.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	43	2	3.14706	3.95052	4.75398	0.00703931	0.00382411	0.0718189	0.0562562
chr4	76143251	76143350	2164391	0	-	0.363636	(0.35,0.378]	chr4	213480	65	INTRON	INTRON	NUP54	ENSG00000138750.16	ENST00000695546.1:ENST00000695547.1:ENST00000695552.1:ENST00000507257.6:ENST00000264883.8:ENST00000510569.6:ENST00000515460.6:ENST00000695554.1:ENST00000695553.1:ENST00000695548.1:ENST00000695551.1:ENST00000695556.1:ENST00000695549.1:ENST00000695550.1:ENST00000695555.1:ENST00000514313.2:ENST00000514987.6:ENST00000502850.5:ENST00000508465.6:ENST00000512151.5:ENST00000504173.1:ENST00000695557.1:ENST00000514307.5:ENST00000508583.6:ENST00000506098.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	60	2	2.49643	3.95044	5.40445	0.00752974	0.00114224	0.0773151	0.0307966
chr3	185664877	185664977	1884734	0	-	0.38	(0.378,0.408]	chr3	188520	61	INTRON	INTRON	IGF2BP2	ENSG00000073792.16	ENST00000382199.7:ENST00000346192.7:ENST00000457616.6:ENST00000421047.3:ENST00000494906.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	80	2	2.04798	3.950425	5.85287	0.00809949	1.39037e-4	0.0808864	0.0107072
chr22	20546064	20546163	7479738	0	+	0.484848	(0.476,0.515]	chr22	762972	85	INTRON	INTRON	MED15	ENSG00000099917.17	ENST00000445987.5:ENST00000444094.5:ENST00000414658.5:ENST00000486656.5:ENST00000433831.5:ENST00000432052.5:ENST00000292733.11:ENST00000263205.11:ENST00000477824.5:ENST00000406969.5:ENST00000382974.6:ENST00000441501.5:ENST00000445189.5:ENST00000451058.5:ENST00000473028.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	74	2	2.31529	3.95037	5.58545	0.00614783	1.04881e-4	0.0676501	0.00863456
chr16	30284288	30284387	6472846	0	-	0.313131	(0.28,0.32]	chr16	625646	22	INTRON	INTRON	SMG1P5	ENSG00000183604.15	ENST00000529428.5	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	5	102	2	2.05785	3.9501150000000003	5.84238	0.00560246	5.0114e-4	0.0678837	0.0206993
chr1	47292560	47292659	445888	0	-	0.323232	(0.32,0.35]	chr1	54033	26	INTRON	INTRON	STIL	ENSG00000123473.17	ENST00000360380.7:ENST00000371877.8:ENST00000337817.10:ENST00000683977.1:ENST00000682977.1:ENST00000396221.6:ENST00000447475.7:ENST00000436811.2:ENST00000682165.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	64	2	2.82385	3.95007	5.07629	0.00468114	0.00217392	0.0600108	0.043502
chr7	152431527	152431627	3681249	0	-	0.5	(0.476,0.515]	chr7	341660	725	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000682301.1:ENST00000452749.2:ENST00000680867.1:ENST00000683800.1:ENST00000684278.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	335	2	3.07778	3.950005	4.82223	1.53389e-6	2.03061e-8	7.41369e-4	4.63859e-5
chr12	53468832	53468932	5143069	0	+	0.33	(0.32,0.35]	chr12	485440	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	PCBP2	ENSG00000197111.16	ENST00000546463.6:ENST00000437231.5:ENST00000447282.5:ENST00000359282.9:ENST00000549863.5:ENST00000359462.9:ENST00000552296.6:ENST00000552819.5:ENST00000455667.7:ENST00000439930.7:ENST00000548933.5:ENST00000562264.5:ENST00000550585.5:ENST00000553064.6:ENST00000547859.2:ENST00000547048.5:ENST00000550733.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	48	2	3.28107	3.94998	4.61889	0.0166646	0.00262488	0.102621	0.0470772
chr2	151810861	151810961	1243562	0	-	0.27	[0,0.28]	chr2	132043	3	SS3_PROX	SS3_PROX:INTRON	ARL5A:ENSG00000283228	ENSG00000162980.17:ENSG00000283228.1	ENST00000446896.7:ENST00000295087.13:ENST00000636024.1:ENST00000637224.1:ENST00000458140.6:ENST00000428992.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	72	2	2.5957	3.94997	5.30424	0.00656974	0.00584781	0.0736092	0.0667594
chr1	227011363	227011463	648605	0	-	0.3	(0.28,0.32]	chr1	76899	3	SS3_PROX	SS3_PROX:INTRON	CDC42BPA	ENSG00000143776.20	ENST00000366766.8:ENST00000366769.7:ENST00000334218.9:ENST00000366767.7:ENST00000448940.5:ENST00000442054.5:ENST00000366764.8:ENST00000429440.5	protein_coding	protein_coding	protein_coding	protein_coding	1	52	2	2.38101	3.949845	5.51868	0.0456017	0.00162747	0.164236	0.0367966
chr12	111523813	111523910	5412470	0	-	0.515464	(0.515,0.57]	chr12	516910	25	INTRON	INTRON	ATXN2	ENSG00000204842.18	ENST00000642389.2:ENST00000608853.5:ENST00000672613.1:ENST00000673436.1:ENST00000643669.2:ENST00000616825.4:ENST00000389153.10:ENST00000550104.5:ENST00000483311.6:ENST00000672335.1:ENST00000492467.6:ENST00000673557.1:ENST00000673283.1:ENST00000673449.1:ENST00000535949.5:ENST00000542287.6:ENST00000644883.1:ENST00000647305.1:ENST00000671792.1:ENST00000392645.6:ENST00000672105.1:ENST00000471866.5:ENST00000549455.1:ENST00000548492.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	41	2	2.90311	3.9497299999999997	4.99635	0.0094233	8.06602e-4	0.0817766	0.0258804
chrX	54545019	54545116	7664753	0	+	0.515464	(0.515,0.57]	chrX	784757	3	INTRON	INTRON	GNL3L	ENSG00000130119.17	ENST00000674498.1:ENST00000674229.1:ENST00000674300.1:ENST00000674225.1:ENST00000674178.1:ENST00000336470.8:ENST00000360845.3:ENST00000674238.1:ENST00000674420.1:ENST00000674311.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	41	2	2.90311	3.9497299999999997	4.99635	0.0094233	8.06602e-4	0.0817766	0.0258804
chr1	182849832	182849932	273082	0	+	0.28	[0,0.28]	chr1	31871	60	INTRON	INTRON	DHX9	ENSG00000135829.17	ENST00000367549.4:ENST00000483416.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	72	2	2.20073	3.949695	5.69866	0.0235708	0.00175225	0.128907	0.0376491
chr6	99415747	99415832	3166051	0	-	0.294118	(0.28,0.32]	chr6	295330	1	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	PNISR	ENSG00000132424.17	ENST00000681615.1:ENST00000369239.10:ENST00000647811.1:ENST00000481229.2:ENST00000679525.1:ENST00000681611.1:ENST00000438806.5:ENST00000478777.5:ENST00000492294.5:ENST00000498075.1:ENST00000466057.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	143	2	1.96321	3.94957	5.93593	0.00263114	3.47635e-4	0.0471758	0.017378
chr10	32937582	32937676	4592500	0	-	0.265957	[0,0.28]	chr10	423505	8	INTRON	INTRON	ITGB1	ENSG00000150093.20	ENST00000609742.3:ENST00000678989.1:ENST00000677363.1:ENST00000302278.8:ENST00000396033.6:ENST00000417122.7:ENST00000676895.1:ENST00000678120.1:ENST00000676623.1:ENST00000678952.1:ENST00000677999.1:ENST00000679187.1:ENST00000678479.1:ENST00000676964.1:ENST00000488494.6:ENST00000488427.2:ENST00000678591.1:ENST00000678943.1:ENST00000437302.6:ENST00000678701.1:ENST00000678766.1:ENST00000676659.1:ENST00000677310.1:ENST00000474568.6:ENST00000676460.1:ENST00000475184.6:ENST00000484088.5:ENST00000480226.5:ENST00000534049.5:ENST00000528877.5:ENST00000414670.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	78	2	3.01286	3.949555	4.88625	0.0173315	0.00129799	0.104099	0.0333764
chr17	1396232	1396332	6699569	0	-	0.48	(0.476,0.515]	chr17	655552	261	INTRON	INTRON	YWHAE	ENSG00000108953.17	ENST00000264335.13:ENST00000571732.5:ENST00000573026.1:ENST00000573196.5:ENST00000575977.1:ENST00000469398.5:ENST00000486241.1:ENST00000489287.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	47	2	3.19975	3.949465	4.69918	0.00400966	0.00383299	0.057767	0.0542786
chr14	100368965	100368986	5968833	0	-	0.095238	[0,0.28]	chr14	567120	1	SS5_PROX	SS5_PROX:INTRON	WARS1	ENSG00000140105.18	ENST00000392882.7:ENST00000358655.8:ENST00000355338.6:ENST00000344102.9:ENST00000557135.5:ENST00000556645.5:ENST00000553395.5:ENST00000556504.5:ENST00000557722.5:ENST00000557297.5:ENST00000556435.5:ENST00000553808.5:ENST00000554331.5:ENST00000555063.5:ENST00000556338.5:ENST00000557239.5:ENST00000556698.5:ENST00000553524.5:ENST00000555410.5:ENST00000556579.5:ENST00000554772.5:ENST00000556660.5:ENST00000556783.5:ENST00000553413.5:ENST00000557094.5:ENST00000553769.6:ENST00000553545.5:ENST00000554820.5:ENST00000557347.5:ENST00000554509.5:ENST00000556209.5:ENST00000554605.5:ENST00000555813.5:ENST00000556695.5:ENST00000556295.5:ENST00000555031.5:ENST00000627608.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	54	2	3.13926	3.94945	4.75964	0.0232081	0.00563224	0.118148	0.0678837
chr9	131148567	131148663	4215859	0	+	0.260417	[0,0.28]	chr9	386572	6	INTRON	INTRON	NUP214	ENSG00000126883.19	ENST00000695497.1:ENST00000695498.1:ENST00000695496.1:ENST00000695495.1:ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000651022.1:ENST00000525980.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	54	2	3.13926	3.94945	4.75964	0.0232081	0.00563224	0.118148	0.0678837
chr1	36459320	36459416	423744	0	-	0.458333	(0.44,0.476]	chr1	51187	15	EXON_LNCRNA	EXON_LNCRNA:SS3_PROX:INTRON	MRPS15	ENSG00000116898.12	ENST00000373116.6:ENST00000488606.5:ENST00000462067.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	128	2	3.6592	3.949375	4.23955	4.14053e-5	1.88744e-5	0.0054616	0.00332085
chr3	15835393	15835493	1624201	0	-	0.36	(0.35,0.378]	chr3	168034	207	INTRON	INTRON	ANKRD28	ENSG00000206560.12	ENST00000399451.6:ENST00000412318.5:ENST00000439830.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	45	2	2.79643	3.949345	5.10226	0.013543	0.00327038	0.101363	0.0508595
chr13	28202942	28203042	5461477	0	+	0.46	(0.44,0.476]	chr13	523261	52	INTRON	INTRON	PAN3	ENSG00000152520.14	ENST00000503791.5:ENST00000380958.8:ENST00000399613.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	57	2	2.64669	3.9492399999999996	5.25179	0.0040295	0.00124521	0.0578376	0.0322969
chr10	50326304	50326404	4617700	0	-	0.35	(0.32,0.35]	chr10	425393	145	INTRON	INTRON	SGMS1	ENSG00000198964.14	ENST00000429490.5:ENST00000361781.7:ENST00000602619.1	protein_coding	protein_coding	protein_coding	protein_coding	1	48	2	2.56618	3.94918	5.33218	0.0274185	0.00204346	0.136498	0.04086
chrX	21942764	21942864	7629876	0	+	0.33	(0.32,0.35]	chrX	781289	10	INTRON	INTRON	SMS	ENSG00000102172.16	ENST00000404933.7:ENST00000379404.5:ENST00000478094.1:ENST00000457085.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	48	2	2.56618	3.94918	5.33218	0.0274185	0.00204346	0.136498	0.04086
chr2	208247973	208248071	1318601	0	-	0.387755	(0.378,0.408]	chr2	138295	7	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	IDH1	ENSG00000138413.14	ENST00000345146.7:ENST00000446179.5:ENST00000415913.5:ENST00000415282.5:ENST00000462386.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	47	2	2.66785	3.9489799999999997	5.23011	0.0224639	5.72873e-4	0.11692	0.0217398
chrX	121293690	121293790	7716127	0	+	0.39	(0.378,0.408]	chrX	789390	1075	INTRON	INTRON	ENSG00000286163	ENSG00000286163.1	ENST00000651788.1	lncRNA	lncRNA	lncRNA	lncRNA	1	47	2	2.66785	3.9489799999999997	5.23011	0.0224639	5.72873e-4	0.11692	0.0217398
chr3	15086199	15086286	1620231	0	-	0.413793	(0.408,0.44]	chr3	167529	2	SS3_PROX	SS3_PROX:INTRON	RBSN	ENSG00000131381.12	ENST00000253699.7:ENST00000476527.6:ENST00000449964.6:ENST00000441057.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	71	2	2.70586	3.9489400000000003	5.19202	0.0016671	9.14702e-4	0.0369207	0.027804
chr11	119090563	119090662	4874480	0	+	0.393939	(0.378,0.408]	chr11	455551	3	SS5_PROX	SS5_PROX:INTRON	HMBS	ENSG00000256269.11	ENST00000652429.1:ENST00000545621.5:ENST00000442944.7:ENST00000542729.5:ENST00000537841.5:ENST00000640813.1:ENST00000546302.6:ENST00000542822.5:ENST00000542044.5:ENST00000536813.6:ENST00000544387.5:ENST00000535793.5:ENST00000543090.5:ENST00000649868.1:ENST00000534956.2:ENST00000648026.1:ENST00000650101.1:ENST00000691249.1:ENST00000650307.1:ENST00000686218.1:ENST00000649823.1:ENST00000691144.1:ENST00000535253.5:ENST00000542345.5:ENST00000392841.1:ENST00000546226.5:ENST00000543543.5:ENST00000648488.1:ENST00000648374.1:ENST00000544360.5:ENST00000686690.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	163	2	3.48644	3.948885	4.41133	2.39366e-5	7.14056e-6	0.00401973	0.00189435
chr3	138201421	138201521	1514093	0	+	0.35	(0.32,0.35]	chr3	158295	125	INTRON	INTRON	ARMC8	ENSG00000114098.18	ENST00000538260.5:ENST00000481646.5:ENST00000469044.6:ENST00000491704.5:ENST00000461600.5:ENST00000466749.5:ENST00000358441.6:ENST00000489213.5:ENST00000461822.5:ENST00000485396.5:ENST00000471453.5:ENST00000470821.5:ENST00000471709.5:ENST00000463485.5:ENST00000468560.1	protein_coding	protein_coding	protein_coding	protein_coding	1	51	2	2.51061	3.948725	5.38684	0.0364463	5.01164e-4	0.138959	0.020217099999999998
chr8	52652427	52652526	3950470	0	-	0.353535	(0.35,0.378]	chr8	362312	62	INTRON	INTRON	RB1CC1	ENSG00000023287.13	ENST00000025008.10:ENST00000435644.6:ENST00000521611.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	72	2	2.28182	3.9486300000000005	5.61544	0.00637232	5.06729e-4	0.0724821	0.020816
chr7	4976836	4976936	3271063	0	+	0.35	(0.32,0.35]	chr7	304010	4	SS5_PROX	SS5_PROX:INTRON	RNF216P1	ENSG00000196204.12	ENST00000406089.6:ENST00000493407.5:ENST00000477090.5:ENST00000404006.5:ENST00000403969.5:ENST00000494947.5:ENST00000429902.5:ENST00000406608.2	lncRNA	lncRNA	lncRNA	lncRNA	1	51	2	2.89743	3.948325	4.99922	0.0127608	0.00223907	0.0926667	0.0435144
chr17	1377338	1377438	6699380	0	-	0.44	(0.408,0.44]	chr17	655552	72	INTRON	INTRON	YWHAE	ENSG00000108953.17	ENST00000264335.13:ENST00000571732.5:ENST00000573026.1:ENST00000573196.5:ENST00000575977.1:ENST00000469398.5:ENST00000486241.1:ENST00000489287.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	57	2	2.60048	3.9483	5.29612	0.00484324	0.00113523	0.0640618	0.0307488
chr1	171508861	171508960	253448	0	+	0.393939	(0.378,0.408]	chr1	30096	228	INTRON	INTRON	PRRC2C	ENSG00000117523.18	ENST00000647382.2:ENST00000367742.7:ENST00000476522.5:ENST00000338920.8:ENST00000467601.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	160	2	2.82831	3.948295	5.06828	7.49551e-4	8.1541e-8	0.0251179	1.23205e-4
chr1	506000	506100	355622	0	-	0.38	(0.378,0.408]	chr1	41008	5	INTRON	INTRON	ENSG00000237094	ENSG00000237094.12	ENST00000641303.1:ENST00000641063.1:ENST00000641049.1:ENST00000642124.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	2	65	2	2.66643	3.94827	5.23011	0.00470023	5.72873e-4	0.0600108	0.0217398
chr12	62325173	62325272	5150207	0	+	0.353535	(0.35,0.378]	chr12	487327	32	INTRON	INTRON	USP15	ENSG00000135655.16	ENST00000353364.7:ENST00000550632.5:ENST00000312635.10:ENST00000280377.10:ENST00000549237.5:ENST00000546694.1:ENST00000552997.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	60	2	2.63527	3.9482600000000003	5.26125	0.00443588	0.00191117	0.061054	0.03947
chr16	89374730	89374830	6542432	0	-	0.55	(0.515,0.57]	chr16	634240	12	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000647238.1:ENST00000644045.1:ENST00000643147.1:ENST00000644139.1:ENST00000568512.6:ENST00000566973.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	52	2	2.51561	3.9481850000000005	5.38076	0.00635044	3.24968e-4	0.0723103	0.0165891
chr8	102864096	102864193	4013240	0	-	0.56701	(0.515,0.57]	chr8	367349	4	UTR5	UTR5:EXON_MRNA:INTRON	AZIN1	ENSG00000155096.15	ENST00000681985.1:ENST00000684566.1:ENST00000682725.1:ENST00000337198.10:ENST00000684459.1:ENST00000683787.1:ENST00000682014.1:ENST00000682969.1:ENST00000684721.1:ENST00000347770.8:ENST00000520402.5:ENST00000518353.5:ENST00000517581.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	13	414	2	3.88247	3.94813	4.01379	1.77318e-8	1.32756e-9	4.22833e-5	9.44799e-6
chr7	27638217	27638317	3510695	0	-	0.4	(0.378,0.408]	chr7	327343	54	INTRON	INTRON	HIBADH	ENSG00000106049.9	ENST00000265395.7:ENST00000428288.2:ENST00000425715.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	70	2	2.18512	3.9481149999999996	5.71111	0.00902136	2.59738e-4	0.0851259	0.0148796
chr1	202449271	202449371	293788	0	+	0.53	(0.515,0.57]	chr1	33848	1	SS5_PROX	SS5_PROX:INTRON	PPP1R12B	ENSG00000077157.22	ENST00000391959.5:ENST00000608999.6:ENST00000498070.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	55	2	2.32967	3.94792	5.56617	0.0133671	5.44229e-5	0.0946278	0.00603408
chr7	20170227	20170324	3497076	0	-	0.195876	[0,0.28]	chr7	326584	1	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	MACC1	ENSG00000183742.13	ENST00000400331.10:ENST00000332878.8:ENST00000589011.1:ENST00000471019.1:ENST00000483317.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	59	2	2.86008	3.94788	5.03568	0.0177015	0.00446141	0.105304	0.0610799
chr17	81586599	81586698	6849085	0	-	0.313131	(0.28,0.32]	chr17	678158	142	INTRON	INTRON	NPLOC4	ENSG00000182446.14	ENST00000331134.11:ENST00000374747.9:ENST00000574897.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	128	2	1.73613	3.9477	6.15927	0.00888124	1.38706e-4	0.0849778	0.0107072
chr2	113469954	113470052	853802	0	+	0.428571	(0.408,0.44]	chr2	95826	15	EXON_MRNA	EXON_MRNA:INTRON	CBWD2	ENSG00000136682.16	ENST00000259199.9:ENST00000416503.6:ENST00000358604.7:ENST00000456188.5:ENST00000479583.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	69	2	2.13157	3.94767	5.76377	0.0109031	1.64089e-4	0.0923273	0.0116917
chr20	58407621	58407721	7289729	0	+	0.33	(0.32,0.35]	chr20	741668	169	INTRON	INTRON	VAPB	ENSG00000124164.16	ENST00000475243.6:ENST00000395802.7:ENST00000520497.1:ENST00000265619.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	63	2	2.71053	3.9473399999999996	5.18415	0.00346747	0.00333629	0.0539802	0.0512081
chr19	16092539	16092626	7026139	0	+	0.563218	(0.515,0.57]	chr19	699208	1	SS3_PROX	SS3_PROX:INTRON	TPM4	ENSG00000167460.17	ENST00000646974.2:ENST00000586499.6:ENST00000647464.2:ENST00000668959.1:ENST00000590180.3:ENST00000655004.1:ENST00000642789.1:ENST00000653979.1:ENST00000645471.1:ENST00000659595.1:ENST00000647037.1:ENST00000587201.6:ENST00000643579.2:ENST00000586193.6:ENST00000643494.1:ENST00000670382.1:ENST00000300933.9:ENST00000646575.1:ENST00000586833.7:ENST00000642221.1:ENST00000658224.1:ENST00000344824.11:ENST00000588410.2:ENST00000657915.1:ENST00000588483.2:ENST00000664983.1:ENST00000663894.1:ENST00000588032.6:ENST00000653961.1:ENST00000591645.3:ENST00000658489.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	69	2	1.75372	3.947335	6.14095	0.0386904	1.8337e-6	0.14279	8.22338e-4
chr10	89704495	89704594	4484580	0	+	0.222222	[0,0.28]	chr10	412695	24	INTRON	INTRON	KIF20B	ENSG00000138182.15	ENST00000371728.8:ENST00000260753.8:ENST00000447580.1	protein_coding	protein_coding	protein_coding	protein_coding	2	80	2	2.36941	3.9473000000000003	5.52519	0.0178556	8.21427e-4	0.106151	0.0261674
chr10	87280271	87280371	4660759	0	-	0.38	(0.378,0.408]	chr10	429440	337	INTRON	INTRON	NUTM2A-AS1	ENSG00000223482.9	ENST00000692417.1:ENST00000688214.1:ENST00000659257.1:ENST00000671543.1:ENST00000451940.6:ENST00000687947.1:ENST00000663644.1:ENST00000684884.1:ENST00000664664.1:ENST00000446751.6:ENST00000456104.5:ENST00000433530.7:ENST00000688257.1:ENST00000433920.5:ENST00000687925.1:ENST00000666515.2:ENST00000688926.1:ENST00000447424.6:ENST00000690598.1:ENST00000663113.1:ENST00000667520.2:ENST00000693252.1:ENST00000687827.1:ENST00000687141.1	lncRNA	lncRNA	lncRNA	lncRNA	2	64	2	2.55607	3.94718	5.33829	0.00704647	3.59275e-4	0.0718189	0.0169207
chr3	119462835	119462935	1791980	0	-	0.3	(0.28,0.32]	chr3	179964	1	SS5_PROX	SS5_PROX:INTRON	TMEM39A	ENSG00000176142.13	ENST00000319172.10:ENST00000438581.6:ENST00000491685.5:ENST00000486159.5:ENST00000468676.5:ENST00000490099.5:ENST00000497993.5:ENST00000482162.1:ENST00000461654.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	92	2	2.25951	3.9471749999999997	5.63484	0.00397414	0.00108324	0.0577209	0.0303015
chr7	119702255	119702355	3628359	0	-	0.3	(0.28,0.32]	chr7	337315	2018	INTRON	INTRON	LINC02476	ENSG00000225546.6	ENST00000660268.1	lncRNA	lncRNA	lncRNA	lncRNA	4	101	2	1.60965	3.9468900000000002	6.28413	0.0460888	1.12598e-5	0.150099	0.0024806
chr8	140800776	140800876	4078052	0	-	0.39	(0.378,0.408]	chr8	370486	2	SS3_PROX	SS3_PROX:INTRON	PTK2	ENSG00000169398.20	ENST00000696786.1:ENST00000522684.5:ENST00000395218.3:ENST00000519654.5:ENST00000521059.5:ENST00000517887.5:ENST00000519993.5:ENST00000340930.7:ENST00000519419.5:ENST00000524202.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	58	2	2.56408	3.94688	5.32968	0.00566993	0.00119786	0.0678837	0.0315806
chr1	225780107	225780206	327265	0	+	0.414141	(0.408,0.44]	chr1	37651	17	INTRON	INTRON	SRP9	ENSG00000143742.14	ENST00000626563.2:ENST00000619790.4:ENST00000304786.12:ENST00000650651.1:ENST00000366839.8:ENST00000651465.1:ENST00000651761.1:ENST00000651653.1:ENST00000366838.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	194	2	2.66198	3.9468449999999997	5.23171	3.34659e-4	2.05087e-8	0.0169733	5.21814e-5
chr2	231710776	231710847	1032686	0	+	0.591549	(0.57,1]	chr2	110290	1	SS5_PROX	SS5_PROX:INTRON	PTMA	ENSG00000187514.17	ENST00000466801.5:ENST00000448874.5:ENST00000409321.5:ENST00000341369.11:ENST00000409115.8:ENST00000481928.1:ENST00000468027.5:ENST00000409683.5:ENST00000410064.5:ENST00000412128.1:ENST00000440384.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	75	2	2.84552	3.94681	5.0481	1.32594e-4	1.61321e-5	0.00992554	0.00323143
chrX	3863845	3863945	7747226	0	-	0.69	(0.57,1]	chrX	793119	2	SS3_PROX	SS3_PROX:INTRON	ENSG00000285756	ENSG00000285756.2	ENST00000648217.1:ENST00000650456.1:ENST00000657698.1:ENST00000661656.1:ENST00000661924.1:ENST00000669719.1:ENST00000655273.1:ENST00000456563.1:ENST00000650538.1	lncRNA	lncRNA	lncRNA	lncRNA	1	29	2	2.91889	3.946735	4.97458	0.00719009	2.67728e-4	0.0756118	0.0149989
chr3	9657046	9657145	1359843	0	+	0.484848	(0.476,0.515]	chr3	142848	29	INTRON	INTRON	MTMR14	ENSG00000163719.20	ENST00000353332.9:ENST00000420925.5:ENST00000447144.5:ENST00000296003.9:ENST00000430020.5:ENST00000351233.9:ENST00000416864.5:ENST00000437997.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	57	2	2.63396	3.946705	5.25945	0.00426634	0.00111445	0.0596808	0.0306328
chr7	105189542	105189642	3601902	0	-	0.51	(0.476,0.515]	chr7	336124	199	INTRON	INTRON	SRPK2	ENSG00000135250.17	ENST00000393651.8:ENST00000357311.7:ENST00000485455.1:ENST00000489828.5:ENST00000476117.1:ENST00000482897.5:ENST00000460391.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	57	2	2.48551	3.9466	5.40769	0.00756632	6.23078e-4	0.0773151	0.0229151
chr1	65380420	65380519	136808	0	+	0.313131	(0.28,0.32]	chr1	15382	5	INTRON	INTRON	DNAJC6	ENSG00000116675.16	ENST00000494710.6:ENST00000263441.11:ENST00000395325.7:ENST00000371069.5	protein_coding	protein_coding	protein_coding	protein_coding	1	49	2	2.73945	3.9465149999999998	5.15358	0.017681	0.0052282	0.11319	0.0633615
chr10	68374262	68374362	4638813	0	-	0.29	(0.28,0.32]	chr10	426545	98	INTRON	INTRON	RUFY2	ENSG00000204130.14	ENST00000466493.5:ENST00000484083.5:ENST00000602465.6:ENST00000388768.6:ENST00000265865.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	49	2	2.73945	3.9465149999999998	5.15358	0.017681	0.0052282	0.11319	0.0633615
chr6	157941021	157941121	3016965	0	+	0.31	(0.28,0.32]	chr6	281454	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SNX9	ENSG00000130340.17	ENST00000680863.1:ENST00000679814.1:ENST00000680464.1:ENST00000681186.1:ENST00000679732.1:ENST00000681183.1:ENST00000681534.1:ENST00000681651.1:ENST00000680089.1:ENST00000680078.1:ENST00000680974.1:ENST00000681138.1:ENST00000392185.8:ENST00000679790.1:ENST00000680495.1:ENST00000679691.1:ENST00000681881.1:ENST00000681469.1:ENST00000680680.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	49	2	2.73945	3.9465149999999998	5.15358	0.017681	0.0052282	0.11319	0.0633615
chr6	143843680	143843780	2981398	0	+	0.54	(0.515,0.57]	chr6	279351	2	SS5_PROX	SS5_PROX:INTRON	LTV1	ENSG00000135521.9	ENST00000367576.6	protein_coding	protein_coding	protein_coding	protein_coding	1	41	2	2.96814	3.946435	4.92473	0.00756432	0.00108255	0.0749063	0.0300133
chr1	21746267	21746367	396488	0	-	0.55	(0.515,0.57]	chr1	47304	93	INTRON	INTRON	USP48	ENSG00000090686.16	ENST00000400301.5:ENST00000308271.14:ENST00000529637.5:ENST00000421625.6:ENST00000374730.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	63	2	2.61581	3.94616	5.27651	0.00127505	5.11033e-4	0.0331722	0.020816
chr18	181136	181235	6855055	0	+	0.323232	(0.32,0.35]	chr18	679521	4	INTRON	INTRON	USP14	ENSG00000101557.15	ENST00000582707.5:ENST00000400266.7:ENST00000261601.8:ENST00000578942.5:ENST00000383589.6:ENST00000583119.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	75	2	2.2643	3.9461250000000003	5.62795	0.00712852	7.01392e-4	0.0756118	0.024224
chr11	62855786	62855885	4961890	0	-	0.353535	(0.35,0.378]	chr11	467083	29	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SNHG1	ENSG00000255717.8	ENST00000689147.1:ENST00000686500.1:ENST00000665371.1:ENST00000687243.1:ENST00000537869.6:ENST00000686081.1:ENST00000686670.1:ENST00000690476.1:ENST00000688102.1:ENST00000691255.1:ENST00000539303.6:ENST00000538654.6:ENST00000540725.6:ENST00000658540.1:ENST00000685229.1:ENST00000686478.1:ENST00000686008.1:ENST00000692887.1:ENST00000691324.1:ENST00000692454.1:ENST00000685577.1:ENST00000693734.1:ENST00000537068.5:ENST00000537925.5:ENST00000541416.6:ENST00000660547.1:ENST00000689664.1:ENST00000690542.1:ENST00000539921.7:ENST00000687029.1:ENST00000661616.1:ENST00000665512.1:ENST00000656268.1:ENST00000535689.6:ENST00000663237.1:ENST00000544550.6:ENST00000660730.1:ENST00000660960.1:ENST00000662229.1:ENST00000670729.1:ENST00000655919.1:ENST00000671236.1:ENST00000667655.1:ENST00000653690.1:ENST00000661936.1:ENST00000544983.2:ENST00000535076.6:ENST00000656240.1:ENST00000656589.1:ENST00000545920.2:ENST00000670502.1:ENST00000663092.1:ENST00000656241.1:ENST00000652879.1:ENST00000668309.1:ENST00000542112.5	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	39	1602	2	3.94215	3.94611	3.95007	2.09631e-9	1.02484e-10	8.86366e-6	1.36016e-6
chr15	80060247	80060347	6071037	0	+	0.59	(0.57,1]	chr15	578299	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ZFAND6	ENSG00000086666.19	ENST00000613266.4:ENST00000561060.5:ENST00000559157.5:ENST00000261749.11:ENST00000561012.5:ENST00000564367.5:ENST00000558494.5:ENST00000618205.4	protein_coding	protein_coding	protein_coding	protein_coding	9	157	2	3.06658	3.94604	4.8255	1.11424e-6	4.71611e-10	6.05355e-4	2.97502e-6
chr19	49820649	49820749	7091294	0	+	0.38	(0.378,0.408]	chr19	710433	8	INTRON	INTRON	MED25	ENSG00000104973.19	ENST00000593767.3:ENST00000312865.10:ENST00000538643.5:ENST00000595185.5	protein_coding	protein_coding	protein_coding	protein_coding	2	58	2	2.51464	3.946015	5.37739	0.00684341	0.0010014	0.0748032	0.0288906
chr7	40064966	40065051	3311783	0	+	0.388235	(0.378,0.408]	chr7	307530	1	EXON_LNCRNA	EXON_LNCRNA:INTRON	CDK13:ENSG00000289269	ENSG00000065883.17:ENSG00000289269.1	ENST00000340829.10:ENST00000181839.10:ENST00000613626.4:ENST00000646039.1:ENST00000643859.1:ENST00000484589.2:ENST00000643915.1:ENST00000645470.1:ENST00000642592.1:ENST00000478563.2:ENST00000644221.1:ENST00000644561.1:ENST00000688346.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA:processed_transcript	2	58	2	2.51464	3.946015	5.37739	0.00684341	0.0010014	0.0748032	0.0288906
chr19	45620706	45620758	7192629	0	-	0.25	[0,0.28]	chr19	728302	1	SS5_PROX	SS5_PROX:INTRON	EML2	ENSG00000125746.18	ENST00000589876.5:ENST00000587152.6:ENST00000245925.8:ENST00000586195.5:ENST00000588308.5:ENST00000536630.5:ENST00000590819.5:ENST00000399594.7:ENST00000590575.5:ENST00000588272.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	96	2	2.00184	3.9459299999999997	5.89002	0.0255167	1.86278e-4	0.120269	0.0119078
chr4	99081748	99081823	2208659	0	-	0.28	[0,0.28]	chr4	216236	2	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ADH5	ENSG00000197894.12	ENST00000296412.14:ENST00000626055.2:ENST00000512621.5:ENST00000512659.5:ENST00000508511.5:ENST00000503130.5:ENST00000502590.5:ENST00000512991.5:ENST00000505652.1:ENST00000508146.5:ENST00000507102.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	60	2	2.20927	3.94581	5.68235	0.0794763	4.43841e-4	0.19979	0.0190552
chr10	124677310	124677409	4711428	0	-	0.545455	(0.515,0.57]	chr10	434762	95	INTRON	INTRON	FAM53B	ENSG00000189319.14	ENST00000337318.8:ENST00000392754.7:ENST00000280780.6	protein_coding	protein_coding	protein_coding	protein_coding	1	42	2	2.46104	3.945615	5.43019	0.032841	2.60422e-4	0.145164	0.0148796
chr1	12328354	12328451	29248	0	+	0.402062	(0.378,0.408]	chr1	3574	1	INTRON	INTRON	VPS13D	ENSG00000048707.15	ENST00000620676.6:ENST00000613099.4:ENST00000011700.10:ENST00000646917.1:ENST00000460333.5:ENST00000487188.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	98	2	3.57821	3.9455799999999996	4.31295	9.60401e-4	1.30334e-5	0.0282401	0.0026712
chr1	8875417	8875507	374273	0	-	0.455556	(0.44,0.476]	chr1	43650	1	SS5_PROX	SS5_PROX:INTRON	ENO1	ENSG00000074800.16	ENST00000234590.10:ENST00000647408.1:ENST00000646370.2:ENST00000645609.1:ENST00000497492.1:ENST00000646660.1:ENST00000646680.1:ENST00000646906.1:ENST00000646156.1:ENST00000643438.1:ENST00000489867.2:ENST00000486051.5:ENST00000492343.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	45	2	2.49112	3.9455600000000004	5.4	0.0315968	7.02611e-4	0.144381	0.024224
chr14	101826916	101827015	5819160	0	+	0.242424	[0,0.28]	chr14	551860	16	INTRON	INTRON	PPP2R5C	ENSG00000078304.20	ENST00000694906.1:ENST00000422945.6:ENST00000554442.5:ENST00000328724.9:ENST00000553890.1:ENST00000350249.7:ENST00000557621.5:ENST00000556946.1:ENST00000556307.5:ENST00000553730.5:ENST00000557714.1:ENST00000334743.9:ENST00000445439.7:ENST00000557095.5:ENST00000556493.1:ENST00000553842.1:ENST00000556373.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	134	2	1.31956	3.945305	6.57105	0.0699387	7.00302e-6	0.184298	0.00187943
chr1	247209791	247209891	684097	0	-	0.4	(0.378,0.408]	chr1	80206	4	INTRON	INTRON	ZNF731P	ENSG00000227671.4	ENST00000606173.1:ENST00000606454.1:ENST00000606212.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	2	97	2	3.79704	3.94525	4.09346	3.6912e-4	4.66745e-5	0.0178272	0.00555772
chr18	8629392	8629492	6868420	0	+	0.34	(0.32,0.35]	chr18	680460	40	INTRON	INTRON	RAB12	ENSG00000206418.5	ENST00000649141.2	protein_coding	protein_coding	protein_coding	protein_coding	3	75	2	2.3011	3.945165	5.58923	0.00617969	8.12357e-4	0.0713552	0.0263656
chr15	64079311	64079410	6202658	0	-	0.424242	(0.408,0.44]	chr15	591577	34	INTRON	INTRON	CIAO2A	ENSG00000166797.11	ENST00000300030.8:ENST00000380290.7:ENST00000559705.1:ENST00000557835.5:ENST00000559950.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	47	2	3.10641	3.9449449999999997	4.78348	0.00555646	0.00290352	0.0648867	0.0494641
chr10	133460964	133461062	4540584	0	+	0.520408	(0.515,0.57]	chr10	419129	4	INTRON	INTRON	SCART1	ENSG00000214279.13	ENST00000482993.6:ENST00000463137.5:ENST00000640237.1:ENST00000488261.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	62	2	2.36534	3.944795	5.52425	0.00404547	1.68822e-4	0.0578376	0.0119215
chr1	36254890	36254990	73236	0	+	0.37	(0.35,0.378]	chr1	9371	291	INTRON	INTRON	THRAP3	ENSG00000054118.15	ENST00000469141.6:ENST00000648638.1:ENST00000354618.10	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	3.80129	3.944725	4.08816	0.0504034	0.046021	0.17488	0.149888
chr10	7755313	7755409	4552994	0	-	0.354167	(0.35,0.378]	chr10	420278	14	UTR3	UTR3:EXON_MRNA:INTRON	KIN	ENSG00000151657.12	ENST00000379562.9:ENST00000498098.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	21	2	3.80129	3.944725	4.08816	0.0504034	0.046021	0.17488	0.149888
chr11	12941968	12942067	4742274	0	+	0.353535	(0.35,0.378]	chr11	439145	49	UTR3	UTR3:EXON_MRNA	TEAD1	ENSG00000187079.20	ENST00000527636.7:ENST00000526600.1	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	3.80129	3.944725	4.08816	0.0504034	0.046021	0.17488	0.149888
chr11	116775572	116775670	5044859	0	-	0.377551	(0.35,0.378]	chr11	475461	19	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ZPR1	ENSG00000109917.11	ENST00000227322.8:ENST00000366405.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	21	2	3.80129	3.944725	4.08816	0.0504034	0.046021	0.17488	0.149888
chr12	9308678	9308774	5073264	0	+	0.364583	(0.35,0.378]	chr12	479695	10	INTRON	INTRON	ENSG00000111788	ENSG00000111788.10	ENST00000539757.1	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	0	21	2	3.80129	3.944725	4.08816	0.0504034	0.046021	0.17488	0.149888
chr12	51166407	51166507	5325808	0	-	0.37	(0.35,0.378]	chr12	507890	409	INTRON	INTRON	TFCP2	ENSG00000135457.11	ENST00000257915.10:ENST00000685804.1:ENST00000549867.5:ENST00000548115.5:ENST00000548108.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	21	2	3.80129	3.944725	4.08816	0.0504034	0.046021	0.17488	0.149888
chr12	57374661	57374760	5338694	0	-	0.363636	(0.35,0.378]	chr12	510710	333	INTRON	INTRON	R3HDM2	ENSG00000179912.21	ENST00000402412.6:ENST00000347140.7:ENST00000634871.1:ENST00000448732.1	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	3.80129	3.944725	4.08816	0.0504034	0.046021	0.17488	0.149888
chr15	90450433	90450530	6099160	0	+	0.360825	(0.35,0.378]	chr15	580588	4	INTRON	INTRON	IQGAP1	ENSG00000140575.13	ENST00000268182.10:ENST00000633485.1:ENST00000560738.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	21	2	3.80129	3.944725	4.08816	0.0504034	0.046021	0.17488	0.149888
chr16	25135304	25135404	6330475	0	+	0.37	(0.35,0.378]	chr16	606091	24	INTRON	INTRON	LCMT1	ENSG00000205629.12	ENST00000380962.9:ENST00000564011.5:ENST00000380966.8:ENST00000399069.8:ENST00000577157.1:ENST00000570981.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	21	2	3.80129	3.944725	4.08816	0.0504034	0.046021	0.17488	0.149888
chr16	28152158	28152258	6467852	0	-	0.37	(0.35,0.378]	chr16	624534	1	SS5_PROX	SS5_PROX:INTRON	XPO6	ENSG00000169180.12	ENST00000304658.10:ENST00000565698.5:ENST00000565284.5:ENST00000564337.5:ENST00000570294.5:ENST00000566175.1:ENST00000574435.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	21	2	3.80129	3.944725	4.08816	0.0504034	0.046021	0.17488	0.149888
chr18	31887646	31887745	6960829	0	-	0.353535	(0.35,0.378]	chr18	688722	126	INTRON	INTRON	TRAPPC8	ENSG00000153339.15	ENST00000283351.10:ENST00000580104.5:ENST00000582539.5:ENST00000577474.2:ENST00000582513.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	21	2	3.80129	3.944725	4.08816	0.0504034	0.046021	0.17488	0.149888
chr2	97502409	97502508	1183336	0	-	0.363636	(0.35,0.378]	chr2	126861	92	INTRON	INTRON	ANKRD36B	ENSG00000196912.13	ENST00000359901.9:ENST00000488634.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	21	2	3.80129	3.944725	4.08816	0.0504034	0.046021	0.17488	0.149888
chr2	241762811	241762911	1056598	0	+	0.37	(0.35,0.378]	chr2	112689	64	INTRON	INTRON	D2HGDH	ENSG00000180902.18	ENST00000403782.5:ENST00000436747.5:ENST00000321264.9:ENST00000400769.6:ENST00000486953.5:ENST00000470343.5:ENST00000473126.1:ENST00000468064.5:ENST00000445308.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	21	2	3.80129	3.944725	4.08816	0.0504034	0.046021	0.17488	0.149888
chr4	184681847	184681947	2087098	0	+	0.37	(0.35,0.378]	chr4	206351	2	SS3_PROX	SS3_PROX:INTRON	PRIMPOL	ENSG00000164306.11	ENST00000515774.5:ENST00000503752.5:ENST00000512834.5:ENST00000314970.11:ENST00000509002.5:ENST00000508001.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	21	2	3.80129	3.944725	4.08816	0.0504034	0.046021	0.17488	0.149888
chr5	128014949	128015049	2715617	0	-	0.37	(0.35,0.378]	chr5	255352	106	INTRON	INTRON	SLC12A2-DT	ENSG00000245937.9	ENST00000499346.7:ENST00000514409.6:ENST00000661296.1:ENST00000657475.2:ENST00000689029.1:ENST00000687795.1:ENST00000661552.2:ENST00000660408.1:ENST00000501652.5:ENST00000501173.6:ENST00000514573.5:ENST00000508353.5:ENST00000660180.1:ENST00000665302.1:ENST00000659990.1:ENST00000606855.1:ENST00000665599.1	lncRNA	lncRNA	lncRNA	lncRNA	0	21	2	3.80129	3.944725	4.08816	0.0504034	0.046021	0.17488	0.149888
chr5	134701103	134701201	2489952	0	+	0.357143	(0.35,0.378]	chr5	237801	27	INTRON	INTRON	SEC24A	ENSG00000113615.13	ENST00000398844.7	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	3.80129	3.944725	4.08816	0.0504034	0.046021	0.17488	0.149888
chr6	20614023	20614123	2829181	0	+	0.36	(0.35,0.378]	chr6	265649	545	INTRON	INTRON	CDKAL1	ENSG00000145996.11	ENST00000274695.8:ENST00000378610.1	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	3.80129	3.944725	4.08816	0.0504034	0.046021	0.17488	0.149888
chr6	97221608	97221708	3164143	0	-	0.36	(0.35,0.378]	chr6	295089	346	INTRON	INTRON	MMS22L	ENSG00000146263.12	ENST00000683635.1:ENST00000275053.8:ENST00000369251.6	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	3.80129	3.944725	4.08816	0.0504034	0.046021	0.17488	0.149888
chr6	110657956	110658056	3188878	0	-	0.36	(0.35,0.378]	chr6	297102	189	INTRON	INTRON	CDK19	ENSG00000155111.15	ENST00000323817.7:ENST00000368911.8:ENST00000413605.6:ENST00000457688.5:ENST00000463016.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	21	2	3.80129	3.944725	4.08816	0.0504034	0.046021	0.17488	0.149888
chr7	66926032	66926132	3326281	0	+	0.36	(0.35,0.378]	chr7	309335	34	INTRON	INTRON	TMEM248	ENSG00000106609.16	ENST00000341567.8:ENST00000607045.5:ENST00000433271.6:ENST00000413593.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	21	2	3.80129	3.944725	4.08816	0.0504034	0.046021	0.17488	0.149888
chr8	724289	724388	3884463	0	-	0.363636	(0.35,0.378]	chr8	357372	79	INTRON	INTRON	ERICH1	ENSG00000104714.14	ENST00000522706.5:ENST00000262109.8:ENST00000518277.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	21	2	3.80129	3.944725	4.08816	0.0504034	0.046021	0.17488	0.149888
chr7	4708054	4708154	3270173	0	+	0.57	(0.515,0.57]	chr7	303884	248	INTRON	INTRON	FOXK1	ENSG00000164916.11	ENST00000328914.5	protein_coding	protein_coding	protein_coding	protein_coding	1	42	2	2.52504	3.9447200000000002	5.3644	0.029342	1.52226e-4	0.128055	0.0106137
chr16	68101795	68101895	6370388	0	+	0.39	(0.378,0.408]	chr16	612188	122	INTRON	INTRON	ENSG00000261864:NFATC3	ENSG00000261864.1:ENSG00000072736.19	ENST00000548144.1:ENST00000563319.5:ENST00000569766.5:ENST00000553077.5:ENST00000566301.5:ENST00000549350.5:ENST00000566893.5:ENST00000575270.5:ENST00000561714.5:ENST00000346183.8:ENST00000568466.6:ENST00000539828.6:ENST00000562171.1:ENST00000349223.9:ENST00000329524.8:ENST00000379165.8:ENST00000562926.5:ENST00000570212.5:ENST00000563796.5:ENST00000567152.5:ENST00000563288.5:ENST00000535127.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA:processed_transcript	1	44	2	3.22599	3.9446849999999998	4.66338	0.0103469	0.00288652	0.0850389	0.0494641
chr3	155894478	155894572	1537368	0	+	0.446809	(0.44,0.476]	chr3	160096	4	INTRON	INTRON	GMPS	ENSG00000163655.16	ENST00000496455.7:ENST00000295920.7	protein_coding	protein_coding	protein_coding	protein_coding	3	69	2	2.53696	3.9446149999999998	5.35227	0.00204135	8.47974e-4	0.041855	0.0267232
chr12	123395844	123395944	5242698	0	+	0.53	(0.515,0.57]	chr12	498200	1	SS3_PROX	SS3_PROX:INTRON	KMT5A	ENSG00000183955.14	ENST00000402868.8:ENST00000437519.5:ENST00000478781.6:ENST00000461103.5:ENST00000437502.1:ENST00000485469.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	39	2	3.12663	3.944535	4.76244	0.00374498	0.00362147	0.0562234	0.0533855
chr22	49786889	49786989	7602809	0	-	0.52	(0.515,0.57]	chr22	778624	1	SS5_PROX	SS5_PROX:INTRON	BRD1	ENSG00000100425.19	ENST00000404760.6:ENST00000404034.5:ENST00000216267.12:ENST00000438393.5:ENST00000457780.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	39	2	3.12663	3.944535	4.76244	0.00374498	0.00362147	0.0562234	0.0533855
chr9	125058303	125058403	4351127	0	-	0.52	(0.515,0.57]	chr9	399524	19	INTRON	INTRON	SCAI	ENSG00000173611.18	ENST00000336505.11:ENST00000373549.8:ENST00000477186.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	39	2	3.12663	3.944535	4.76244	0.00374498	0.00362147	0.0562234	0.0533855
chr5	55329605	55329704	2355307	0	+	0.262626	[0,0.28]	chr5	227152	3	INTRON	INTRON	MTREX	ENSG00000039123.16	ENST00000230640.10:ENST00000506750.5:ENST00000504997.1:ENST00000505565.5:ENST00000502953.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	73	2	2.72768	3.94449	5.1613	0.00866441	0.00405445	0.0787025	0.0578376
chr10	74151843	74151942	4455771	0	+	0.464646	(0.44,0.476]	chr10	411523	1	INTRON	INTRON	ADK	ENSG00000156110.15	ENST00000672429.1:ENST00000539909.6:ENST00000286621.7:ENST00000478611.2:ENST00000673352.1	protein_coding	protein_coding	protein_coding	protein_coding	1	43	2	3.2029	3.9442700000000004	4.68564	0.00816201	0.00308681	0.0766625	0.0510391
chrX	123606925	123607024	7877746	0	-	0.373737	(0.35,0.378]	chrX	802391	28	INTRON	INTRON	THOC2	ENSG00000125676.20	ENST00000448128.5:ENST00000245838.13:ENST00000441692.5:ENST00000492203.1:ENST00000497887.5:ENST00000618150.4:ENST00000432353.5:ENST00000455053.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	60	2	2.39583	3.944205	5.49258	0.0107976	8.19894e-4	0.0920575	0.0264086
chr1	168041148	168041247	249550	0	+	0.393939	(0.378,0.408]	chr1	29626	23	INTRON	INTRON	DCAF6	ENSG00000143164.16	ENST00000432587.6:ENST00000367843.7:ENST00000367840.4:ENST00000312263.10	protein_coding	protein_coding	protein_coding	protein_coding	1	47	2	2.60296	3.9440850000000003	5.28521	0.0267851	4.52877e-4	0.123349	0.0192381
chr7	129928240	129928340	3637725	0	-	0.43	(0.408,0.44]	chr7	338226	23	INTRON	INTRON	UBE2H	ENSG00000186591.13	ENST00000355621.8:ENST00000649897.1:ENST00000473814.6:ENST00000496698.5:ENST00000472396.5:ENST00000480245.5:ENST00000490974.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	45	2	3.46104	3.9440850000000003	4.42713	0.0173083	0.00105552	0.104099	0.0299229
chr8	37876411	37876509	3935713	0	-	0.408163	(0.378,0.408]	chr8	360569	7	INTRON	INTRON	RAB11FIP1	ENSG00000156675.16	ENST00000330843.9:ENST00000287263.8:ENST00000522727.5:ENST00000524118.1	protein_coding	protein_coding	protein_coding	protein_coding	1	47	2	2.60296	3.9440850000000003	5.28521	0.0267851	4.52877e-4	0.123349	0.0192381
chr1	145996500	145996579	541123	0	-	0.455696	(0.44,0.476]	chr1	63491	4	UTR5	UTR5:EXON_MRNA	TXNIP	ENSG00000265972.6	ENST00000582401.6	protein_coding	protein_coding	protein_coding	protein_coding	27	849	2	3.61886	3.9440550000000005	4.26925	8.60925e-9	6.65739e-10	2.50472e-5	5.41199e-6
chr6	169657559	169657658	3266655	0	-	0.393939	(0.378,0.408]	chr6	303167	52	INTRON	INTRON	WDR27	ENSG00000184465.16	ENST00000448612.6:ENST00000648472.1:ENST00000423258.5:ENST00000647790.1:ENST00000546525.5:ENST00000441385.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	44	2	2.71183	3.94405	5.17627	0.0170789	0.00208234	0.110899	0.0411801
chr19	54103688	54103781	7098515	0	+	0.569892	(0.515,0.57]	chr19	711798	1	INTRON	INTRON	NDUFA3	ENSG00000170906.16	ENST00000417903.5:ENST00000419113.5:ENST00000391762.5:ENST00000485876.6:ENST00000451517.5:ENST00000471292.5:ENST00000391764.7:ENST00000391763.3:ENST00000484103.1:ENST00000303553.5:ENST00000422029.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	42	2	3.2024	3.9440399999999998	4.68568	0.00322022	0.00270027	0.0507087	0.0479115
chr19	12939804	12939878	7022479	0	+	0.283784	(0.28,0.32]	chr19	698284	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CALR	ENSG00000179218.15	ENST00000587486.6:ENST00000316448.10:ENST00000586967.2:ENST00000586760.2:ENST00000680816.1:ENST00000590325.1:ENST00000588454.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	101	2	1.9822	3.94381	5.90542	0.00761984	3.92169e-4	0.0776647	0.0184748
chr15	58635043	58635142	6192356	0	-	0.393939	(0.378,0.408]	chr15	589923	13	INTRON	INTRON	ADAM10	ENSG00000137845.15	ENST00000260408.8:ENST00000402627.5:ENST00000561288.1:ENST00000396136.6:ENST00000559053.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	47	2	2.90162	3.943745	4.98587	0.0113157	0.00152268	0.0886121	0.0360297
chr6	79024720	79024819	3141540	0	-	0.515152	(0.476,0.515]	chr6	292862	52	INTRON	INTRON	PHIP	ENSG00000146247.14	ENST00000275034.5	protein_coding	protein_coding	protein_coding	protein_coding	2	61	2	2.54157	3.94373	5.34589	0.00697457	3.224e-4	0.0718189	0.0159645
chr7	10743097	10743196	3484211	0	-	0.383838	(0.378,0.408]	chr7	325772	1812	INTRON	INTRON	MGC4859	ENSG00000283117.1	ENST00000634803.1	lncRNA	lncRNA	lncRNA	lncRNA	1	49	2	2.30961	3.943715	5.57782	0.055088	1.18586e-4	0.165463	0.00930884
chr2	61501695	61501795	1130844	0	-	0.38	(0.378,0.408]	chr2	121586	3	SS5_PROX	SS5_PROX:INTRON	XPO1	ENSG00000082898.19	ENST00000677110.1:ENST00000676553.1:ENST00000677556.1:ENST00000677814.1:ENST00000676771.1:ENST00000677803.1:ENST00000677239.1:ENST00000678790.1:ENST00000677928.1:ENST00000678182.1:ENST00000677150.1:ENST00000678172.1:ENST00000678360.1:ENST00000678081.1:ENST00000676889.1:ENST00000676783.1:ENST00000679035.1:ENST00000677422.1:ENST00000677417.1:ENST00000677813.1:ENST00000676999.1:ENST00000676667.1:ENST00000678263.1:ENST00000678877.1:ENST00000677933.1:ENST00000680228.1:ENST00000677289.1:ENST00000677190.1:ENST00000481073.6:ENST00000401558.7:ENST00000428210.5:ENST00000677290.1:ENST00000677850.1:ENST00000451765.6:ENST00000676789.1:ENST00000678741.1:ENST00000404992.6:ENST00000406957.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	288	2	3.74078	3.94369	4.1466	5.27188e-6	1.89029e-8	0.00170345	4.97686e-5
chr10	5782741	5782841	4544608	0	-	0.49	(0.476,0.515]	chr10	419772	84	INTRON	INTRON	GDI2	ENSG00000057608.17	ENST00000380191.9:ENST00000447751.5:ENST00000380181.7:ENST00000456041.5	protein_coding	protein_coding	protein_coding	protein_coding	1	45	2	2.47949	3.94359	5.40769	0.0326974	6.23078e-4	0.145164	0.0229151
chr16	21497088	21497188	6461324	0	-	0.39	(0.378,0.408]	chr16	623371	91	INTRON	INTRON	SMG1P3	ENSG00000180747.15	ENST00000522480.5:ENST00000522841.6:ENST00000437413.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	2	58	2	2.46345	3.943515	5.42358	0.00827342	8.39231e-4	0.0813266	0.0266487
chr4	67780162	67780262	1965889	0	+	0.38	(0.378,0.408]	chr4	197356	93	INTRON	INTRON	UBA6-DT	ENSG00000248049.8	ENST00000500538.7:ENST00000667140.1:ENST00000663060.1:ENST00000502758.1	lncRNA	lncRNA	lncRNA	lncRNA	2	58	2	2.46345	3.943515	5.42358	0.00827342	8.39231e-4	0.0813266	0.0266487
chr4	2602614	2602714	1913178	0	+	0.46	(0.44,0.476]	chr4	191983	59	INTRON	INTRON	RNF4:FAM193A	ENSG00000063978.16:ENSG00000125386.16	ENST00000508235.1:ENST00000637812.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	46	2	2.5364	3.94336	5.35032	0.0309324	3.02713e-4	0.13151	0.0155054
chr19	49655370	49655469	7090271	0	+	0.525253	(0.515,0.57]	chr19	710095	1	INTRON	INTRON	SCAF1	ENSG00000126461.15	ENST00000360565.8	protein_coding	protein_coding	protein_coding	protein_coding	2	52	2	2.78208	3.9432799999999997	5.10448	0.00209264	0.0010345	0.0424943	0.029231300000000002
chr1	90946699	90946799	501772	0	-	0.31	(0.28,0.32]	chr1	59492	50	INTRON	INTRON	ZNF644	ENSG00000122482.22	ENST00000370440.5:ENST00000337393.10:ENST00000347275.9:ENST00000361321.5:ENST00000467231.5:ENST00000498303.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	76	2	1.76293	3.94289	6.12285	0.0766478	2.62905e-5	0.196164	0.00402941
chr17	3823298	3823398	6707971	0	-	0.41	(0.408,0.44]	chr17	657000	4	SS3_PROX	SS3_PROX:SS5_PROX:INTRON	NCBP3	ENSG00000074356.17	ENST00000389005.6:ENST00000574911.5:ENST00000575815.5:ENST00000577169.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	152	2	3.01171	3.94274	4.87377	2.8363e-4	2.94987e-7	0.015495	2.72287e-4
chr2	30259931	30260028	726178	0	+	0.319588	(0.28,0.32]	chr2	83954	25	UTR3	UTR3:EXON_MRNA:INTRON	LBH	ENSG00000213626.13	ENST00000395323.9:ENST00000404397.5	protein_coding	protein_coding	protein_coding	protein_coding	1	56	2	2.18975	3.94273	5.69571	0.0776042	2.03259e-4	0.196285	0.0124395
chr4	163135622	163135722	2280993	0	-	0.5	(0.476,0.515]	chr4	221567	7	EXON_MRNA	EXON_MRNA:INTRON	NAF1	ENSG00000145414.9	ENST00000509434.5:ENST00000422287.6:ENST00000274054.3:ENST00000509232.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	45	2	2.82673	3.9425999999999997	5.05847	0.0134403	0.00108081	0.0946278	0.0300133
chr6	13706651	13706751	3059175	0	-	0.48	(0.476,0.515]	chr6	284548	94	INTRON	INTRON	RANBP9	ENSG00000010017.13	ENST00000011619.6	protein_coding	protein_coding	protein_coding	protein_coding	1	45	2	2.82673	3.9425999999999997	5.05847	0.0134403	0.00108081	0.0946278	0.0300133
chr6	89744014	89744114	3161246	0	-	0.5	(0.476,0.515]	chr6	294735	3	SS3_PROX	SS3_PROX:INTRON	MDN1	ENSG00000112159.12	ENST00000369393.8:ENST00000629399.2	protein_coding	protein_coding	protein_coding	protein_coding	1	45	2	2.82673	3.9425999999999997	5.05847	0.0134403	0.00108081	0.0946278	0.0300133
chr5	140486232	140486307	2503690	0	+	0.466667	(0.44,0.476]	chr5	239240	1	INTRON	INTRON	ANKHD1	ENSG00000131503.21	ENST00000297183.10:ENST00000360839.7:ENST00000421134.5:ENST00000246149.10:ENST00000412116.5	protein_coding	protein_coding	protein_coding	protein_coding	3	125	2	3.50659	3.94252	4.37845	5.83536e-5	1.64817e-5	0.00625795	0.00325235
chr15	82406630	82406730	6076050	0	+	0.18	[0,0.28]	chr15	578744	1	SS3_PROX	SS3_PROX:INTRON	UBE2Q2P2	ENSG00000259429.5	ENST00000618775.4:ENST00000613592.4	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	1	56	2	3.33854	3.94232	4.5461	0.0365918	0.00278022	0.138959	0.0488412
chr12	24944930	24945030	5297871	0	-	0.31	(0.28,0.32]	chr12	503884	420	INTRON	INTRON	BCAT1	ENSG00000060982.15	ENST00000261192.12:ENST00000342945.9:ENST00000539780.5:ENST00000546285.1	protein_coding	protein_coding	protein_coding	protein_coding	3	79	2	2.28714	3.942145	5.59715	0.00696126	0.00123856	0.0754576	0.0322669
chr11	62593213	62593307	4959789	0	-	0.308511	(0.28,0.32]	chr11	466322	1	UTR3	UTR3:EXON_MRNA	MTA2	ENSG00000149480.7	ENST00000278823.7:ENST00000524902.5	protein_coding	protein_coding	protein_coding	protein_coding	3	79	2	2.1076	3.94203	5.77646	0.0133585	6.44045e-4	0.100772	0.0231685
chr1	235292533	235292633	663506	0	-	0.49	(0.476,0.515]	chr1	78552	314	INTRON	INTRON	ARID4B	ENSG00000054267.22	ENST00000349213.7:ENST00000366603.6:ENST00000264183.9:ENST00000421364.5:ENST00000491632.5:ENST00000418304.1:ENST00000466653.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	117	2	1.8109	3.94193	6.07296	0.00417555	2.96173e-5	0.0591344	0.00451038
chr16	89539185	89539283	6420668	0	+	0.377551	(0.35,0.378]	chr16	616262	16	EXON_MRNA	EXON_MRNA:INTRON	SPG7	ENSG00000197912.16	ENST00000647079.1:ENST00000646303.1:ENST00000643649.1:ENST00000644498.1:ENST00000645897.1:ENST00000643668.1:ENST00000644225.1:ENST00000645818.2:ENST00000645977.1:ENST00000645063.1:ENST00000646263.1:ENST00000643724.1:ENST00000644781.1:ENST00000644901.1:ENST00000645042.1:ENST00000646531.1:ENST00000646930.1:ENST00000642436.1:ENST00000644210.1:ENST00000646589.1:ENST00000268704.7:ENST00000646826.1:ENST00000646716.1:ENST00000643345.1:ENST00000646958.1:ENST00000643105.1:ENST00000645354.1:ENST00000642334.1:ENST00000647227.1:ENST00000646445.1:ENST00000643954.1:ENST00000646399.1:ENST00000644671.1:ENST00000644748.1:ENST00000643496.1:ENST00000647032.1:ENST00000644751.1:ENST00000642427.1:ENST00000643370.1:ENST00000645886.1:ENST00000646454.1:ENST00000561945.2:ENST00000644171.1:ENST00000566682.2:ENST00000645258.1:ENST00000644044.1:ENST00000642263.1:ENST00000644556.1:ENST00000645842.1:ENST00000643734.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	51	2	3.21456	3.9419250000000003	4.66929	0.00541617	0.00420814	0.066545000000000007	0.0572185
chr11	32426564	32426663	4940009	0	-	0.515152	(0.476,0.515]	chr11	462731	86	INTRON	INTRON	WT1	ENSG00000184937.16	ENST00000379077.9:ENST00000452863.10:ENST00000379079.8:ENST00000530998.5:ENST00000332351.9:ENST00000640146.2:ENST00000448076.9:ENST00000639563.3:ENST00000527775.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	43	2	2.73205	3.9417400000000002	5.15143	0.0159328	0.00166579	0.109464	0.0369207
chr17	67363876	67363973	6826120	0	-	0.494845	(0.476,0.515]	chr17	674633	6	INTRON	INTRON	PSMD12	ENSG00000197170.10	ENST00000356126.8:ENST00000357146.4:ENST00000584008.5:ENST00000584289.5:ENST00000581618.1:ENST00000579365.5:ENST00000578015.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	43	2	2.73205	3.9417400000000002	5.15143	0.0159328	0.00166579	0.109464	0.0369207
chrX	101043187	101043281	7855195	0	-	0.489362	(0.476,0.515]	chrX	800831	5	INTRON	INTRON	TRMT2B	ENSG00000188917.15	ENST00000545398.5:ENST00000372936.4:ENST00000372939.5:ENST00000372935.5:ENST00000478422.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	43	2	2.73205	3.9417400000000002	5.15143	0.0159328	0.00166579	0.109464	0.0369207
chr22	19840745	19840845	7555487	0	-	0.42	(0.408,0.44]	chr22	772443	190	INTRON	INTRON	GNB1L	ENSG00000185838.14	ENST00000329517.11:ENST00000403325.5:ENST00000405009.5:ENST00000460402.5:ENST00000481086.1:ENST00000453108.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	69	2	2.08376	3.9416949999999997	5.79963	0.0129886	1.39468e-4	0.0991656	0.0107072
chr3	172760663	172760763	1563315	0	+	0.32	(0.28,0.32]	chr3	161744	4	SS5_PROX	SS5_PROX:INTRON	ECT2	ENSG00000114346.14	ENST00000232458.9:ENST00000540509.5:ENST00000392692.8:ENST00000417960.5:ENST00000428567.5:ENST00000441497.6	protein_coding	protein_coding	protein_coding	protein_coding	4	99	2	2.62951	3.9416949999999997	5.25388	0.00385849	7.40084e-4	0.0542786	0.024882
chr8	86371030	86371130	3789535	0	+	0.41	(0.408,0.44]	chr8	351314	16	INTRON	INTRON	WWP1	ENSG00000123124.14	ENST00000517970.6:ENST00000523863.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	43	2	3.20437	3.941655	4.67894	0.0087648	0.00306596	0.0788605	0.0509893
chr11	117145115	117145214	4869096	0	+	0.575758	(0.57,1]	chr11	454434	3	INTRON	INTRON	PAFAH1B2	ENSG00000168092.14	ENST00000419197.6:ENST00000527958.6:ENST00000304808.10:ENST00000529887.6:ENST00000526888.1:ENST00000530272.1:ENST00000533206.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	69	2	3.30683	3.9416450000000003	4.57646	1.13407e-4	5.08048e-7	0.00957524	3.80889e-4
chr1	23165566	23165666	398985	0	-	0.47	(0.44,0.476]	chr1	47812	320	INTRON	INTRON	LUZP1	ENSG00000169641.14	ENST00000302291.8:ENST00000314174.5:ENST00000471849.5	protein_coding	protein_coding	protein_coding	protein_coding	1	44	2	2.58033	3.941615	5.3029	0.0247511	0.00102616	0.131869	0.029231300000000002
chr19	54106164	54106258	7098546	0	+	0.446809	(0.44,0.476]	chr19	711810	2	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NDUFA3	ENSG00000170906.16	ENST00000417903.5:ENST00000419113.5:ENST00000391762.5:ENST00000485876.6:ENST00000451517.5:ENST00000471292.5:ENST00000391764.7:ENST00000391763.3:ENST00000484103.1:ENST00000303553.5:ENST00000422029.6:ENST00000420296.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	44	2	2.58033	3.941615	5.3029	0.0247511	0.00102616	0.131869	0.029231300000000002
chr5	168575750	168575850	2770684	0	-	0.4	(0.378,0.408]	chr5	260749	64	INTRON	INTRON	PANK3	ENSG00000120137.7	ENST00000239231.7:ENST00000522176.1	protein_coding	protein_coding	protein_coding	protein_coding	2	97	2	3.88153	3.9416149999999996	4.0017	2.49905e-4	7.73853e-5	0.0146029	0.00735438
chr7	155771888	155771987	3453192	0	+	0.40404	(0.378,0.408]	chr7	322745	49	INTRON	INTRON	RBM33	ENSG00000184863.11	ENST00000401878.8:ENST00000341148.7:ENST00000392755.2	protein_coding	protein_coding	protein_coding	protein_coding	2	97	2	3.88153	3.9416149999999996	4.0017	2.49905e-4	7.73853e-5	0.0146029	0.00735438
chr10	22580446	22580545	4579151	0	-	0.424242	(0.408,0.44]	chr10	421998	66	INTRON	INTRON	PIP4K2A	ENSG00000150867.14	ENST00000376573.9:ENST00000323883.11:ENST00000545335.5:ENST00000604912.1:ENST00000422321.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	46	2	2.95296	3.9416	4.93024	0.00929354	0.00170369	0.0817766	0.0381936
chr9	37587827	37587924	4251747	0	-	0.309278	(0.28,0.32]	chr9	391572	13	INTRON	INTRON	TOMM5	ENSG00000175768.13	ENST00000540941.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	1	54	2	2.91851	3.9415250000000004	4.96454	0.0130672	0.00344078	0.093385	0.0539802
chr3	172206883	172206983	1561226	0	+	0.36	(0.35,0.378]	chr3	161562	197	INTRON	INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000469491.5:ENST00000336824.8:ENST00000416957.5:ENST00000478016.1:ENST00000443501.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	46	2	3.31736	3.94143	4.5655	0.0155464	0.00211072	0.100909	0.0425419
chrX	138965622	138965722	7901219	0	-	0.38	(0.378,0.408]	chrX	804239	1006	INTRON	INTRON	FGF13	ENSG00000129682.16	ENST00000441825.8:ENST00000626909.2:ENST00000436198.5:ENST00000455663.5:ENST00000448673.1:ENST00000421460.1	protein_coding	protein_coding	protein_coding	protein_coding	4	80	2	2.28793	3.941375	5.59482	0.00291235	4.23783e-4	0.0494641	0.0189958
chr1	114406740	114406840	526836	0	-	0.31	(0.28,0.32]	chr1	62074	4	SS5_PROX	SS5_PROX:INTRON	TRIM33	ENSG00000197323.12	ENST00000358465.7:ENST00000369543.6:ENST00000448034.5:ENST00000476908.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	81	2	2.53475	3.9412	5.34765	0.00287138	0.00257029	0.0474836	0.0466761
chr22	19905916	19906015	7555955	0	-	0.30303	(0.28,0.32]	chr22	772518	65	INTRON	INTRON	TXNRD2	ENSG00000184470.21	ENST00000400518.5:ENST00000542719.6:ENST00000494454.5:ENST00000474308.5:ENST00000400525.6:ENST00000400521.7:ENST00000400519.6:ENST00000635155.1:ENST00000491939.6:ENST00000334363.14:ENST00000475995.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	81	2	2.53475	3.9412	5.34765	0.00287138	0.00257029	0.0474836	0.0466761
chr22	19485992	19486091	7476896	0	+	0.393939	(0.378,0.408]	chr22	762407	16	INTRON	INTRON	CDC45	ENSG00000093009.11	ENST00000407835.6:ENST00000437685.6:ENST00000483431.5:ENST00000438587.6:ENST00000672837.1:ENST00000263201.7:ENST00000404724.7:ENST00000487669.5:ENST00000428937.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	237	2	2.74044	3.9411050000000003	5.14177	9.03994e-5	4.72009e-8	0.00846412	8.91482e-5
chr7	17876486	17876584	3495913	0	-	0.520408	(0.515,0.57]	chr7	326468	3	INTRON	INTRON	SNX13	ENSG00000071189.21	ENST00000428135.7:ENST00000611725.4:ENST00000409076.6:ENST00000444712.5:ENST00000482558.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	40	2	3.37125	3.940625	4.51	0.00809449	0.00136343	0.0766625	0.0339121
chr10	49883609	49883708	4615613	0	-	0.484848	(0.476,0.515]	chr10	425178	34	INTRON	INTRON	PARG	ENSG00000227345.9	ENST00000402038.7:ENST00000616448.2:ENST00000614063.4:ENST00000610922.1:ENST00000611974.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	46	2	3.10264	3.9406	4.77856	0.00543163	0.00305743	0.0645052	0.0509893
chr7	152318630	152318730	3680115	0	-	0.24	[0,0.28]	chr7	341641	29	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000684262.1:ENST00000682301.1:ENST00000452749.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	98	2	1.92964	3.940455	5.95127	0.0157154	7.37141e-4	0.109464	0.02495
chr2	109819177	109819263	849398	0	+	0.488372	(0.476,0.515]	chr2	95080	1	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	RGPD5	ENSG00000015568.13	ENST00000393283.5:ENST00000272454.10:ENST00000016946.8:ENST00000413468.1:ENST00000493394.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	44	2	3.35059	3.94041	4.53023	0.0119748	0.00171515	0.0899583	0.0381936
chr6	20453566	20453666	2827966	0	+	0.54	(0.515,0.57]	chr6	265583	135	INTRON	INTRON	E2F3	ENSG00000112242.16	ENST00000346618.8:ENST00000535432.2	protein_coding	protein_coding	protein_coding	protein_coding	3	108	2	3.36603	3.94025	4.51447	1.39454e-4	2.25115e-6	0.0107072	9.42151e-4
chr16	16630773	16630873	6312171	0	+	0.54	(0.515,0.57]	chr16	604102	179	INTRON	INTRON	ENSG00000260126:ENSG00000287905	ENSG00000260126.2:ENSG00000287905.1	ENST00000567465.2:ENST00000660246.1	lncRNA	lncRNA	lncRNA	lncRNA	1	41	2	2.68833	3.9402049999999997	5.19208	0.0184931	3.4344e-4	0.108861	0.0164987
chr10	69327343	69327443	4445961	0	+	0.27	[0,0.28]	chr10	410222	78	INTRON	INTRON	HK1	ENSG00000156515.24	ENST00000436817.6:ENST00000360289.6:ENST00000448642.6:ENST00000480047.5:ENST00000450646.6:ENST00000483077.5:ENST00000464803.6:ENST00000476368.6:ENST00000643399.2:ENST00000483054.5:ENST00000421088.5:ENST00000298649.8:ENST00000359426.7:ENST00000493591.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	71	2	2.28885	3.940035	5.59122	0.0181093	0.00247649	0.114853	0.0446195
chr2	73779070	73779170	1156363	0	-	0.49	(0.476,0.515]	chr2	123652	2	SS5_PROX	SS5_PROX:INTRON	DUSP11	ENSG00000144048.11	ENST00000696050.1:ENST00000696051.1:ENST00000272444.8:ENST00000696052.1:ENST00000696053.1:ENST00000696054.1:ENST00000696055.1:ENST00000696056.1:ENST00000480948.5:ENST00000477458.1:ENST00000443070.5:ENST00000696057.1:ENST00000452812.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	45	2	2.69967	3.94003	5.18039	0.0195838	6.58744e-4	0.109483	0.0232396
chr14	103439318	103439415	5826173	0	+	0.319588	(0.28,0.32]	chr14	552832	6	INTRON	INTRON	MARK3	ENSG00000075413.19	ENST00000678179.1:ENST00000676838.1:ENST00000677348.1:ENST00000677404.1:ENST00000676694.1:ENST00000676938.1:ENST00000678619.1:ENST00000676897.1:ENST00000677214.1:ENST00000677942.1:ENST00000676830.1:ENST00000678999.1:ENST00000677228.1:ENST00000556744.2:ENST00000677104.1:ENST00000679330.1:ENST00000560417.6:ENST00000440884.7:ENST00000676475.1:ENST00000677035.1:ENST00000678022.1:ENST00000677560.1:ENST00000561314.6:ENST00000429436.7:ENST00000677118.1:ENST00000676564.1:ENST00000678169.1:ENST00000678175.1:ENST00000678897.1:ENST00000678278.1:ENST00000676645.1:ENST00000677829.1:ENST00000678302.1:ENST00000677133.1:ENST00000561164.2:ENST00000558223.6:ENST00000559328.6:ENST00000678207.1:ENST00000677360.1:ENST00000676905.1:ENST00000678343.1:ENST00000677347.1:ENST00000678071.1:ENST00000677432.1:ENST00000678237.1:ENST00000677604.1:ENST00000676518.1:ENST00000677051.1:ENST00000677857.1:ENST00000677869.1:ENST00000678423.1:ENST00000560603.6:ENST00000416682.6:ENST00000303622.13:ENST00000216288.11:ENST00000679105.1:ENST00000553942.5:ENST00000335102.9:ENST00000561225.1:ENST00000678091.1:ENST00000561071.5:ENST00000558698.5:ENST00000559268.5:ENST00000560731.5:ENST00000676745.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	49	2	3.07744	3.939995	4.80255	0.0137406	0.00604536	0.0949306	0.0700813
chr16	69697842	69697941	6381352	0	+	0.292929	(0.28,0.32]	chr16	613255	16	UTR3	UTR3:EXON_MRNA	NFAT5	ENSG00000102908.22	ENST00000426654.6:ENST00000349945.7:ENST00000354436.6:ENST00000627621.3:ENST00000650987.1:ENST00000393742.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	49	2	3.07744	3.939995	4.80255	0.0137406	0.00604536	0.0949306	0.0700813
chr4	32101955	32102055	1942468	0	+	0.29	(0.28,0.32]	chr4	194727	1038	INTRON	INTRON	LINC02506	ENSG00000251129.3	ENST00000662669.1:ENST00000665582.2:ENST00000667252.2:ENST00000660373.2:ENST00000684849.1:ENST00000513211.2:ENST00000659613.1:ENST00000657576.1:ENST00000686730.1:ENST00000685407.1:ENST00000685455.1:ENST00000655951.1	lncRNA	lncRNA	lncRNA	lncRNA	1	49	2	3.07744	3.939995	4.80255	0.0137406	0.00604536	0.0949306	0.0700813
chr21	33463267	33463365	7440809	0	-	0.326531	(0.32,0.35]	chr21	759350	24	INTRON	INTRON	TMEM50B	ENSG00000142188.17	ENST00000420455.5:ENST00000542230.7:ENST00000441128.5:ENST00000442441.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	177	2	2.8571	3.939985	5.02287	8.26213e-4	2.06075e-7	0.0265898	2.15018e-4
chr5	171400389	171400479	2546696	0	+	0.4	(0.378,0.408]	chr5	243103	3	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NPM1	ENSG00000181163.14	ENST00000517671.5:ENST00000676613.1:ENST00000678186.1:ENST00000678267.1:ENST00000677297.1:ENST00000521672.6:ENST00000679190.1:ENST00000677467.1:ENST00000678280.1:ENST00000676625.1:ENST00000679006.1:ENST00000351986.10:ENST00000676504.1:ENST00000676589.1:ENST00000677357.1:ENST00000679233.1:ENST00000296930.10:ENST00000393820.2:ENST00000521260.2:ENST00000518587.2:ENST00000678774.1:ENST00000677600.1:ENST00000677741.1:ENST00000677325.1:ENST00000677672.1:ENST00000677907.1:ENST00000677904.1:ENST00000677682.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	157	2	3.22823	3.939945	4.65166	1.00572e-4	1.5211e-6	0.00905982	7.39558e-4
chr6	17667378	17667478	3065810	0	-	0.44	(0.408,0.44]	chr6	284840	16	INTRON	INTRON	NUP153	ENSG00000124789.12	ENST00000613258.4:ENST00000537253.5:ENST00000262077.3	protein_coding	protein_coding	protein_coding	protein_coding	1	44	2	3.36378	3.9399100000000002	4.51604	0.0137419	0.0016048	0.0949306	0.0367961
chr1	67414304	67414394	477464	0	-	0.355556	(0.35,0.378]	chr1	57465	7	INTRON	INTRON	SERBP1	ENSG00000142864.15	ENST00000370994.8:ENST00000361219.11:ENST00000370995.6:ENST00000370990.5:ENST00000493607.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	72	2	2.11531	3.939905	5.7645	0.0119629	2.7432e-4	0.0962115	0.0151711
chr20	3989179	3989279	7309144	0	-	0.56	(0.515,0.57]	chr20	744300	144	INTRON	INTRON	RNF24	ENSG00000101236.17	ENST00000336095.10:ENST00000358395.11:ENST00000545616.2	protein_coding	protein_coding	protein_coding	protein_coding	1	40	2	2.65834	3.939875	5.22141	0.0187418	6.44141e-4	0.117523	0.0231685
chr15	20492879	20492979	6118811	0	-	0.53	(0.515,0.57]	chr15	582481	90	INTRON	INTRON	HERC2P3	ENSG00000180229.12	ENST00000428453.5:ENST00000437318.5:ENST00000430598.5:ENST00000429257.5:ENST00000414804.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	1	41	2	3.03037	3.939865	4.84936	0.00608732	0.00146032	0.0676501	0.0349875
chr16	15072549	15072649	6450218	0	-	0.55	(0.515,0.57]	chr16	621478	2	SS5_PROX	SS5_PROX:INTRON	RRN3	ENSG00000085721.13	ENST00000198767.11:ENST00000563559.5:ENST00000429751.6:ENST00000327307.11	protein_coding	protein_coding	protein_coding	protein_coding	1	41	2	3.03037	3.939865	4.84936	0.00608732	0.00146032	0.0676501	0.0349875
chr6	53283991	53284090	3107532	0	-	0.484848	(0.476,0.515]	chr6	291014	59	INTRON	INTRON	ELOVL5	ENSG00000012660.14	ENST00000370918.8:ENST00000542638.5:ENST00000304434.11:ENST00000485336.5:ENST00000465983.5:ENST00000486973.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	45	2	2.8863	3.9398600000000004	4.99342	0.0111679	0.00139274	0.0877435	0.0341261
chr15	51556292	51556392	6175766	0	-	0.41	(0.408,0.44]	chr15	588745	85	INTRON	INTRON	DMXL2	ENSG00000104093.14	ENST00000251076.9:ENST00000543779.6:ENST00000560891.6:ENST00000449909.7:ENST00000560421.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	74	2	2.1226	3.939825	5.75705	0.012812	4.13252e-5	0.0926667	0.00519938
chr5	62497108	62497208	2363867	0	+	0.36	(0.35,0.378]	chr5	227945	26	INTRON	INTRON	IPO11	ENSG00000086200.17	ENST00000424533.5:ENST00000325324.11:ENST00000409296.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	50	2	2.32443	3.9397149999999996	5.555	0.0544216	1.71389e-4	0.164972	0.0113605
chr15	50614663	50614763	6172550	0	-	0.33	(0.32,0.35]	chr15	588323	4	SS3_PROX	SS3_PROX:INTRON	TRPM7	ENSG00000092439.16	ENST00000646667.1:ENST00000560955.5:ENST00000560638.1	protein_coding	protein_coding	protein_coding	protein_coding	1	51	2	2.9451	3.939675	4.93425	0.011051	0.00281048	0.0873897	0.0488779
chr19	11092901	11093000	7016847	0	+	0.414141	(0.408,0.44]	chr19	697422	16	INTRON	INTRON	LDLR	ENSG00000130164.14	ENST00000557933.5:ENST00000558518.6:ENST00000545707.5:ENST00000535915.5:ENST00000455727.6:ENST00000557958.1:ENST00000560502.5:ENST00000558013.5:ENST00000252444.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	97	2	3.71874	3.939585	4.16043	3.17998e-4	5.66588e-5	0.0159645	0.00655354
chr1	245914829	245914929	674772	0	-	0.29	(0.28,0.32]	chr1	79681	506	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000366517.5:ENST00000366516.5:ENST00000490107.6:ENST00000470510.5:ENST00000493441.5:ENST00000488153.5:ENST00000492487.5:ENST00000391836.3:ENST00000464398.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	49	2	2.67453	3.939565	5.2046	0.021289	0.00448664	0.123318	0.0593175
chr18	1277783	1277877	6940955	0	-	0.297872	(0.28,0.32]	chr18	686569	13	INTRON	INTRON	LINC00470	ENSG00000132204.14	ENST00000657423.1:ENST00000657618.1:ENST00000584090.5:ENST00000660947.1:ENST00000669242.1:ENST00000660475.1:ENST00000653775.1:ENST00000661931.1:ENST00000412816.7:ENST00000577867.5:ENST00000584492.5:ENST00000667416.1:ENST00000661852.1:ENST00000657919.1:ENST00000661646.1:ENST00000667776.1:ENST00000654559.1:ENST00000661233.1:ENST00000653213.1:ENST00000659094.1:ENST00000660964.1:ENST00000577403.6:ENST00000660358.1:ENST00000669153.1:ENST00000657121.1:ENST00000655957.1:ENST00000659289.1:ENST00000665133.1:ENST00000671558.1:ENST00000666542.1:ENST00000663512.1:ENST00000663392.1:ENST00000582862.6:ENST00000578835.5:ENST00000669312.1:ENST00000581430.5:ENST00000581212.1	lncRNA	lncRNA	lncRNA	lncRNA	1	49	2	2.67453	3.939565	5.2046	0.021289	0.00448664	0.123318	0.0593175
chr2	28928492	28928590	725528	0	+	0.285714	(0.28,0.32]	chr2	83845	4	INTRON	INTRON	WDR43	ENSG00000163811.12	ENST00000407426.8:ENST00000466067.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	67	2	2.13651	3.939425	5.7423400000000004	0.0265696	7.31742e-4	0.134088	0.0248722
chr10	113910327	113910426	4527412	0	+	0.474747	(0.44,0.476]	chr10	417479	19	UTR3	UTR3:EXON_MRNA	NHLRC2	ENSG00000196865.4	ENST00000369301.3	protein_coding	protein_coding	protein_coding	protein_coding	3	74	2	2.28847	3.9391799999999995	5.58989	0.00692113	9.76499e-5	0.0718189	0.00830626
chr19	55235061	55235159	7213544	0	-	0.346939	(0.32,0.35]	chr19	732737	20	INTRON	INTRON	PPP6R1	ENSG00000105063.19	ENST00000412770.7:ENST00000587283.5	protein_coding	protein_coding	protein_coding	protein_coding	4	86	2	1.88141	3.939085	5.99676	0.0161424	1.55894e-4	0.109464	0.0113565
chr15	68198584	68198675	6213927	0	-	0.307692	(0.28,0.32]	chr15	592917	6	INTRON	INTRON	ENSG00000260007:CALML4	ENSG00000260007.3:ENSG00000129007.16	ENST00000637888.1:ENST00000467889.3:ENST00000540479.6:ENST00000395465.3:ENST00000562767.2:ENST00000637054.1:ENST00000448060.7:ENST00000395463.3:ENST00000638026.1:ENST00000354678.3:ENST00000646164.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	53	2	2.67975	3.9390849999999995	5.19842	0.0252505	0.00152333	0.12011	0.0360297
chr5	113016750	113016849	2453797	0	+	0.30303	(0.28,0.32]	chr5	235130	34	UTR3	UTR3:EXON_MRNA	DCP2	ENSG00000172795.17	ENST00000515408.5:ENST00000389063.3	protein_coding	protein_coding	protein_coding	protein_coding	1	53	2	2.67975	3.9390849999999995	5.19842	0.0252505	0.00152333	0.12011	0.0360297
chr1	213107557	213107657	311268	0	+	0.34	(0.32,0.35]	chr1	35925	26	INTRON	INTRON	RPS6KC1	ENSG00000136643.12	ENST00000615329.4:ENST00000543354.5:ENST00000614059.4:ENST00000543470.5:ENST00000366960.8:ENST00000366959.4:ENST00000490299.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	47	2	3.18392	3.93886	4.6938	0.0137794	0.00379806	0.0949306	0.0562562
chr4	25351588	25351638	1933755	0	+	0.34	(0.32,0.35]	chr4	194144	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	ZCCHC4	ENSG00000168228.16	ENST00000302874.9:ENST00000505451.5:ENST00000507760.5:ENST00000505412.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	47	2	3.18392	3.93886	4.6938	0.0137794	0.00379806	0.0949306	0.0562562
chr10	28566822	28566922	4414142	0	+	0.35	(0.32,0.35]	chr10	407148	284	INTRON	INTRON	WAC	ENSG00000095787.24	ENST00000680735.1:ENST00000375664.8:ENST00000428935.6:ENST00000651598.1:ENST00000628285.3:ENST00000681112.1:ENST00000679570.1:ENST00000375646.5:ENST00000354911.9:ENST00000347934.8:ENST00000420266.6:ENST00000651885.1:ENST00000651441.1:ENST00000679398.1:ENST00000424454.5:ENST00000442148.6:ENST00000448193.5:ENST00000414108.6:ENST00000679428.1:ENST00000439676.5:ENST00000345541.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	95	2	1.91062	3.9387399999999997	5.96686	0.00946346	1.77352e-4	0.0863138	0.0121697
chr17	75376490	75376590	6837506	0	-	0.37	(0.35,0.378]	chr17	675716	433	INTRON	INTRON	GRB2	ENSG00000177885.15	ENST00000316615.9:ENST00000316804.10:ENST00000392562.5:ENST00000392564.5:ENST00000392563.5:ENST00000648046.1:ENST00000578961.5:ENST00000582582.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	65	2	2.23651	3.938585	5.64066	0.020879	1.14247e-4	0.111766	0.0091431
chr3	5129084	5129183	1353643	0	+	0.373737	(0.35,0.378]	chr3	142361	1	INTRON	INTRON	ARL8B	ENSG00000134108.14	ENST00000429403.5:ENST00000256496.8:ENST00000455168.5:ENST00000444332.1:ENST00000419534.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	138	2	3.09958	3.9384750000000004	4.77737	8.54875e-4	7.99518e-7	0.0267428	5.04643e-4
chr15	34534373	34534473	6133398	0	-	0.49	(0.476,0.515]	chr15	584352	2	SS3_PROX	SS3_PROX:INTRON	GOLGA8B	ENSG00000215252.12	ENST00000683415.1:ENST00000342314.9:ENST00000569100.5:ENST00000484716.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	68	2	2.25138	3.9383	5.62522	0.00692374	2.4907e-4	0.0753208	0.0145812
chr1	235210376	235210475	662669	0	-	0.323232	(0.32,0.35]	chr1	78465	139	INTRON	INTRON	ARID4B	ENSG00000054267.22	ENST00000349213.7:ENST00000366603.6:ENST00000264183.9:ENST00000421364.5:ENST00000491632.5:ENST00000444620.2:ENST00000471257.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	62	2	2.45306	3.938055	5.42305	0.00916394	0.00149027	0.0855292	0.035
chr19	18452941	18453040	7152314	0	-	0.50505	(0.476,0.515]	chr19	722846	9	INTRON	INTRON	ELL	ENSG00000105656.13	ENST00000262809.9:ENST00000594635.6:ENST00000596124.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	59	2	2.96824	3.937925	4.90761	0.00386428	9.98194e-4	0.0542786	0.0290732
chrX	101051050	101051150	7855274	0	-	0.38	(0.378,0.408]	chrX	800836	4	SS5_PROX	SS5_PROX:INTRON	TRMT2B:TRMT2B-AS1	ENSG00000188917.15:ENSG00000225839.2	ENST00000545398.5:ENST00000372936.4:ENST00000372939.5:ENST00000372935.5:ENST00000478422.1:ENST00000443801.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA:processed_transcript	2	65	2	1.94681	3.937765	5.92872	0.0457723	1.93094e-5	0.149888	0.00337681
chr14	76325100	76325199	5797250	0	+	0.474747	(0.44,0.476]	chr14	549230	138	INTRON	INTRON	ESRRB	ENSG00000119715.15	ENST00000512784.6	protein_coding	protein_coding	protein_coding	protein_coding	2	61	2	2.24189	3.937635	5.63338	0.0193405	7.86121e-5	0.108861	0.00738014
chr10	67827341	67827441	4636266	0	-	0.52	(0.515,0.57]	chr10	426278	4	SS5_PROX	SS5_PROX:INTRON	DNAJC12	ENSG00000108176.15	ENST00000225171.7:ENST00000483798.6:ENST00000480963.5:ENST00000339758.7:ENST00000480180.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	39	2	3.19178	3.9374399999999996	4.6831	0.00471288	0.00289534	0.0600108	0.0494641
chr1	162599070	162599170	238706	0	+	0.25	[0,0.28]	chr1	28757	4	SS3_PROX	SS3_PROX:INTRON	UAP1	ENSG00000117143.14	ENST00000367925.6:ENST00000367926.9:ENST00000486089.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	53	2	2.57033	3.937285	5.30424	0.0305273	0.00584781	0.143385	0.0667594
chr18	21615138	21615238	6879181	0	+	0.32	(0.28,0.32]	chr18	681836	23	INTRON	INTRON	SNRPD1	ENSG00000167088.11	ENST00000300413.10:ENST00000579618.1:ENST00000582475.1	protein_coding	protein_coding	protein_coding	protein_coding	1	53	2	2.73077	3.9370900000000004	5.14341	0.0220748	0.00185891	0.115395	0.039946
chr20	2147362	2147461	7221894	0	+	0.323232	(0.32,0.35]	chr20	733806	37	UTR3	UTR3:EXON_MRNA:INTRON	STK35	ENSG00000125834.13	ENST00000381482.8:ENST00000493263.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	52	2	3.07935	3.9370849999999997	4.79482	0.00724137	0.00447781	0.0729826	0.0610799
chr1	52844372	52844472	104922	0	+	0.38	(0.378,0.408]	chr1	13720	10	INTRON	INTRON	ZYG11A	ENSG00000203995.10	ENST00000371532.5:ENST00000612017.4:ENST00000371528.2	protein_coding	protein_coding	protein_coding	protein_coding	1	48	2	3.10274	3.936895	4.77105	0.00586642	0.00330823	0.0668095	0.0527031
chr10	73057878	73057977	4647451	0	-	0.484848	(0.476,0.515]	chr10	427530	39	INTRON	INTRON	P4HA1	ENSG00000122884.13	ENST00000394890.7:ENST00000307116.6:ENST00000373008.6:ENST00000440381.5:ENST00000263556.3	protein_coding	protein_coding	protein_coding	protein_coding	5	87	2	2.1318	3.936675	5.74155	0.00333541	1.47804e-4	0.0528877	0.0111067
chr5	65578342	65578439	2368786	0	+	0.381443	(0.378,0.408]	chr5	228256	9	INTRON	INTRON	PPWD1	ENSG00000113593.12	ENST00000535264.5:ENST00000538977.5:ENST00000261308.10:ENST00000510930.5:ENST00000511908.5:ENST00000514172.1:ENST00000511334.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	47	2	2.53503	3.93666	5.33829	0.0319942	3.59275e-4	0.13174	0.0169207
chr7	32580454	32580536	3304100	0	+	0.402439	(0.378,0.408]	chr7	306838	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	AVL9	ENSG00000105778.20	ENST00000318709.9:ENST00000409301.5:ENST00000446718.1:ENST00000470500.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	47	2	2.53503	3.93666	5.33829	0.0319942	3.59275e-4	0.13174	0.0169207
chr14	101860575	101860675	5819501	0	+	0.42	(0.408,0.44]	chr14	551879	33	INTRON	INTRON	PPP2R5C	ENSG00000078304.20	ENST00000694906.1:ENST00000422945.6:ENST00000328724.9:ENST00000350249.7:ENST00000557621.5:ENST00000556307.5:ENST00000553730.5:ENST00000334743.9:ENST00000445439.7:ENST00000557095.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	172	2	3.03537	3.936655	4.83794	5.12176e-5	1.14688e-6	0.00585477	6.75084e-4
chr12	62473676	62473776	5151229	0	+	0.5	(0.476,0.515]	chr12	487458	25	INTRON	INTRON	MON2	ENSG00000061987.16	ENST00000641654.1:ENST00000546600.5:ENST00000393630.8:ENST00000549378.5:ENST00000547095.5:ENST00000552738.5:ENST00000393629.6:ENST00000552115.5:ENST00000549286.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	68	2	2.37448	3.936575	5.49867	0.00419067	4.28561e-4	0.0591344	0.0189958
chr9	131174888	131174959	4216136	0	+	0.366197	(0.35,0.378]	chr9	386619	2	INTRON	INTRON	NUP214	ENSG00000126883.19	ENST00000695497.1:ENST00000695498.1:ENST00000695496.1:ENST00000695495.1:ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000525980.5:ENST00000526346.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	90	2	1.96703	3.936415	5.9058	0.0135243	2.99525e-5	0.0949306	0.0043593700000000004
chr2	32498548	32498647	732249	0	+	0.333333	(0.32,0.35]	chr2	84523	45	INTRON	INTRON	BIRC6	ENSG00000115760.15	ENST00000421745.7:ENST00000648282.1	protein_coding	protein_coding	protein_coding	protein_coding	2	68	2	2.3471	3.93636	5.52562	0.0156413	2.76065e-4	0.101393	0.0147997
chr12	123584111	123584211	5445518	0	-	0.52	(0.515,0.57]	chr12	521152	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TMED2-DT	ENSG00000247373.3	ENST00000498967.3	lncRNA	lncRNA	lncRNA	lncRNA	2	53	2	2.26012	3.93633	5.61254	0.0160033	1.10757e-4	0.109464	0.00945003
chr17	66374718	66374818	6663019	0	+	0.45	(0.44,0.476]	chr17	650326	105	INTRON	INTRON	PRKCA	ENSG00000154229.12	ENST00000413366.8:ENST00000578063.5:ENST00000284384.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	226	2	2.72743	3.93625	5.14507	8.16302e-5	4.0134e-8	0.00810741	8.1439e-5
chr10	21671014	21671109	4405793	0	+	0.557895	(0.515,0.57]	chr10	406510	1	SS5_PROX	SS5_PROX:INTRON	MLLT10	ENSG00000078403.17	ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000651298.1:ENST00000377059.7:ENST00000651382.1:ENST00000438473.6:ENST00000650921.1:ENST00000651405.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	253	2	3.16315	3.936245	4.70934	1.30909e-6	1.73203e-8	6.74546e-4	4.22833e-5
chr4	55626622	55626721	2150601	0	-	0.545455	(0.515,0.57]	chr4	211635	99	INTRON	INTRON	NMU	ENSG00000109255.11	ENST00000511469.5:ENST00000264218.7:ENST00000505262.5:ENST00000507338.1:ENST00000515325.5:ENST00000509371.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	52	2	2.82994	3.936095	5.04225	0.00168661	0.00131841	0.0381778	0.0331539
chr4	138212088	138212188	2245525	0	-	0.31	(0.28,0.32]	chr4	219484	265	INTRON	INTRON	SLC7A11	ENSG00000151012.13	ENST00000280612.9:ENST00000509248.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	95	2	2.47916	3.9357550000000003	5.39235	0.0024844	0.0015115	0.0446195	0.0360297
chr1	229543067	229543165	653613	0	-	0.408163	(0.378,0.408]	chr1	77476	3	INTRON	INTRON	ABCB10	ENSG00000135776.5	ENST00000344517.5	protein_coding	protein_coding	protein_coding	protein_coding	5	88	2	2.01851	3.93569	5.85287	0.00559022	1.39037e-4	0.0678837	0.0107072
chr13	95243887	95243987	5639298	0	-	0.47	(0.44,0.476]	chr13	537157	87	INTRON	INTRON	ABCC4	ENSG00000125257.16	ENST00000645237.2:ENST00000643051.1:ENST00000643842.1:ENST00000646439.1:ENST00000643816.1:ENST00000536256.3:ENST00000643556.1:ENST00000629385.1:ENST00000642524.1:ENST00000645532.1:ENST00000644471.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	109	2	1.83566	3.935475	6.03529	0.00463278	4.06961e-5	0.0627926	0.00539487
chr16	88773225	88773325	6540102	0	-	0.62	(0.57,1]	chr16	633998	234	INTRON	INTRON	PIEZO1	ENSG00000103335.22	ENST00000301015.14	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	2.99729	3.9353100000000003	4.87333	0.00538023	3.21412e-4	0.0642754	0.0159645
chr7	2365029	2365127	3269731	0	+	0.571429	(0.57,1]	chr7	303825	1	INTRON	INTRON	EIF3B	ENSG00000106263.19	ENST00000431643.5:ENST00000360876.9:ENST00000397011.2:ENST00000463229.2:ENST00000468250.2:ENST00000463026.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	29	2	2.99729	3.9353100000000003	4.87333	0.00538023	3.21412e-4	0.0642754	0.0159645
chr1	230096032	230096132	334367	0	+	0.65	(0.57,1]	chr1	38930	41	INTRON	INTRON	GALNT2	ENSG00000143641.10	ENST00000494106.1:ENST00000366672.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	29	2	3.09313	3.9352150000000004	4.7773	0.00369015	5.07088e-4	0.0535094	0.0202328
chr14	67925939	67926039	5766435	0	+	0.67	(0.57,1]	chr14	547062	167	INTRON	INTRON	RAD51B	ENSG00000182185.19	ENST00000487861.5:ENST00000471583.6:ENST00000479335.5:ENST00000487270.5:ENST00000488612.5:ENST00000553595.5:ENST00000497460.5:ENST00000492236.5:ENST00000554244.5:ENST00000478014.5:ENST00000469165.6:ENST00000460526.5:ENST00000468382.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	29	2	3.09313	3.9352150000000004	4.7773	0.00369015	5.07088e-4	0.0535094	0.0202328
chr1	223983197	223983285	643709	0	-	0.431818	(0.408,0.44]	chr1	76010	6	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO	GTF2IP20	ENSG00000272645.4	ENST00000634905.2:ENST00000431663.1:ENST00000685304.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	2	94	2	3.93309	3.935205	3.93732	1.78185e-4	1.0367e-4	0.0121697	0.00863144
chrX	14864359	14864459	7766406	0	-	0.28	[0,0.28]	chrX	793709	4	SS5_PROX	SS5_PROX:INTRON	FANCB	ENSG00000181544.16	ENST00000696351.1:ENST00000696352.1:ENST00000696353.1:ENST00000696354.1:ENST00000696322.1:ENST00000452869.2:ENST00000696311.1:ENST00000643728.2:ENST00000696355.1:ENST00000696312.1:ENST00000696356.1:ENST00000650831.1:ENST00000646255.1:ENST00000324138.7:ENST00000696357.1:ENST00000696323.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	58	2	2.77716	3.934985	5.09281	0.022039	0.00372534	0.115395	0.0561984
chr20	41431812	41431911	7342640	0	-	0.565657	(0.515,0.57]	chr20	748397	53	INTRON	INTRON	CHD6	ENSG00000124177.16	ENST00000373233.8:ENST00000440697.5	protein_coding	protein_coding	protein_coding	protein_coding	1	46	2	3.58064	3.934925	4.28921	0.00990051	6.54693e-4	0.0877296	0.0233335
chr2	86457371	86457471	823101	0	+	0.49	(0.476,0.515]	chr2	91934	3	SS5_PROX	SS5_PROX:INTRON	KDM3A	ENSG00000115548.17	ENST00000409556.5:ENST00000312912.10:ENST00000441719.5:ENST00000409064.5:ENST00000488971.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	45	2	2.63168	3.934685	5.23769	0.0237106	5.17244e-4	0.118716	0.0203753
chr1	222720447	222720545	319986	0	+	0.397959	(0.378,0.408]	chr1	36793	7	INTRON	INTRON	BROX	ENSG00000162819.12	ENST00000612948.4:ENST00000340934.10:ENST00000537020.5:ENST00000539697.5:ENST00000426638.1:ENST00000473962.5:ENST00000489191.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	43	2	2.9917	3.93466	4.87762	0.0068789	0.00553849	0.0749442	0.0648867
chr6	158067502	158067594	3017884	0	+	0.380435	(0.378,0.408]	chr6	281541	5	INTRON	INTRON	SYNJ2	ENSG00000078269.15	ENST00000355585.9:ENST00000640338.1:ENST00000638626.1	protein_coding	protein_coding	protein_coding	protein_coding	1	43	2	2.9917	3.93466	4.87762	0.0068789	0.00553849	0.0749442	0.0648867
chr9	37764065	37764165	4121513	0	+	0.38	(0.378,0.408]	chr9	375706	2	SS5_PROX	SS5_PROX:INTRON	TRMT10B	ENSG00000165275.10	ENST00000377753.6:ENST00000537911.5:ENST00000297994.4:ENST00000377754.6:ENST00000488673.6:ENST00000537016.5:ENST00000538370.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	43	2	2.9917	3.93466	4.87762	0.0068789	0.00553849	0.0749442	0.0648867
chr19	12722476	12722572	7141399	0	-	0.604167	(0.57,1]	chr19	720741	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	TNPO2	ENSG00000105576.16	ENST00000425528.6:ENST00000592287.5:ENST00000588216.5:ENST00000585886.5:ENST00000589956.5:ENST00000587654.5:ENST00000589337.5:ENST00000590781.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:nonsense_mediated_decay:processed_transcript	15	260	2	3.18447	3.934425	4.68438	3.95094e-8	3.1819e-12	7.74327e-5	1.42046e-7
chr16	11910108	11910208	6446353	0	-	0.42	(0.408,0.44]	chr16	621130	61	INTRON	INTRON	GSPT1	ENSG00000103342.13	ENST00000434724.7:ENST00000439887.6:ENST00000420576.6:ENST00000568849.5:ENST00000562169.1	protein_coding	protein_coding	protein_coding	protein_coding	5	172	2	3.45196	3.934335	4.41671	1.40837e-5	3.26329e-6	0.0029932	0.0011757
chr21	29029712	29029808	7390014	0	+	0.458333	(0.44,0.476]	chr21	752965	14	INTRON	INTRON	USP16	ENSG00000156256.15	ENST00000399975.7:ENST00000334352.8:ENST00000474835.5:ENST00000399973.1:ENST00000399976.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	50	2	3.43305	3.93415	4.43525	0.00897296	0.00159668	0.0849778	0.0364566
chr7	846018	846118	3268777	0	+	0.31	(0.28,0.32]	chr7	303581	21	INTRON	INTRON	SUN1	ENSG00000164828.18	ENST00000452783.6:ENST00000389574.7:ENST00000401592.6:ENST00000413171.6:ENST00000405266.5:ENST00000340926.7:ENST00000425407.6:ENST00000450881.5:ENST00000493681.5:ENST00000471349.1:ENST00000419312.5:ENST00000429178.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	87	2	1.83303	3.93397	6.03491	0.0370023	4.10265e-5	0.139194	0.00519615
chr12	76063879	76063979	5370010	0	-	0.45	(0.44,0.476]	chr12	512308	24	INTRON	INTRON	NAP1L1	ENSG00000187109.15	ENST00000618691.5:ENST00000552056.5:ENST00000393263.7:ENST00000431879.7:ENST00000552147.5:ENST00000547773.5:ENST00000544816.5:ENST00000542344.5:ENST00000535020.6:ENST00000549596.5:ENST00000552342.5:ENST00000547529.6:ENST00000548044.5:ENST00000550934.5:ENST00000551992.5:ENST00000548273.5:ENST00000551600.5:ENST00000547704.5:ENST00000551524.5:ENST00000549988.5:ENST00000547479.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	57	2	2.78129	3.9339399999999998	5.08659	0.00229634	0.00226401	0.0439319	0.0425438
chr2	126681363	126681463	862262	0	+	0.38	(0.378,0.408]	chr2	96617	26	INTRON	INTRON	GYPC	ENSG00000136732.16	ENST00000259254.9:ENST00000409836.3:ENST00000356887.12	protein_coding	protein_coding	protein_coding	protein_coding	2	58	2	2.74646	3.9338699999999998	5.12128	0.00271684	0.00251746	0.0481064	0.0446195
chr1	167652697	167652797	247185	0	+	0.35	(0.32,0.35]	chr1	29437	108	INTRON	INTRON	RCSD1	ENSG00000198771.11	ENST00000537350.5:ENST00000361496.3:ENST00000367854.8:ENST00000472038.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	46	2	2.90786	3.9337850000000003	4.95971	0.00993008	0.00663522	0.0877296	0.0703181
chr12	71882077	71882174	5169624	0	+	0.329897	(0.32,0.35]	chr12	489732	11	INTRON	INTRON	TBC1D15	ENSG00000121749.16	ENST00000482439.6:ENST00000550746.5:ENST00000485960.7:ENST00000462788.6:ENST00000319106.12:ENST00000491063.5:ENST00000472611.6:ENST00000549402.5:ENST00000474468.5:ENST00000498482.5:ENST00000468049.2:ENST00000546932.5:ENST00000460818.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	46	2	2.90786	3.9337850000000003	4.95971	0.00993008	0.00663522	0.0877296	0.0703181
chr15	42497130	42497230	6009615	0	+	0.39	(0.378,0.408]	chr15	572143	8	INTRON	INTRON	SNAP23	ENSG00000092531.10	ENST00000568745.5:ENST00000561526.5:ENST00000568227.5:ENST00000568451.5:ENST00000563765.5:ENST00000349777.5:ENST00000249647.8:ENST00000564153.5:ENST00000566141.5:ENST00000567094.5:ENST00000566327.5:ENST00000568331.5:ENST00000563451.1:ENST00000626061.2:ENST00000627440.2:ENST00000566035.5:ENST00000568859.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	63	2	2.16303	3.93377	5.70451	0.0252473	6.32265e-5	0.12011	0.00658818
chr20	56390665	56390765	7358873	0	-	0.34	(0.32,0.35]	chr20	750388	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	AURKA	ENSG00000087586.18	ENST00000395914.5:ENST00000395913.7:ENST00000312783.10:ENST00000395911.5:ENST00000395915.8:ENST00000347343.6:ENST00000371356.6:ENST00000395907.5:ENST00000441357.5:ENST00000420474.5:ENST00000422322.5:ENST00000456249.5:ENST00000451915.1	protein_coding	protein_coding	protein_coding	protein_coding	1	50	2	2.68921	3.933715	5.17822	0.0230336	0.00115625	0.118056	0.0313436
chr1	204552957	204553057	297798	0	+	0.49	(0.476,0.515]	chr1	34331	34	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	MDM4	ENSG00000198625.14	ENST00000367183.7:ENST00000391947.6:ENST00000454264.6:ENST00000612738.4:ENST00000614459.4:ENST00000616250.4:ENST00000367182.8:ENST00000463049.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	124	2	3.48384	3.933615	4.38339	1.02503e-4	8.08784e-6	0.00915589	0.00204092
chr6	4795803	4795903	2791056	0	+	0.34	(0.32,0.35]	chr6	263598	186	INTRON	INTRON	CDYL	ENSG00000153046.18	ENST00000328908.9:ENST00000491864.1:ENST00000440139.5:ENST00000483019.1:ENST00000397588.8:ENST00000472453.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	68	2	2.38582	3.933325	5.48083	0.0138529	3.35843e-4	0.0953077	0.0162819
chr2	201165363	201165462	982046	0	+	0.535354	(0.515,0.57]	chr2	105453	15	UTR3	UTR3:EXON_MRNA	CFLAR	ENSG00000003402.21	ENST00000309955.8	protein_coding	protein_coding	protein_coding	protein_coding	5	85	2	2.16572	3.9333099999999996	5.7009	0.0029374	2.61423e-5	0.0483262	0.00402177
chr7	44208700	44208794	3314221	0	+	0.329787	(0.32,0.35]	chr7	307868	1	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	YKT6	ENSG00000106636.9	ENST00000679020.1:ENST00000678497.1:ENST00000496112.5:ENST00000678359.1:ENST00000447123.6:ENST00000223369.3:ENST00000478411.2:ENST00000679209.1:ENST00000677851.1:ENST00000679310.1:ENST00000677436.1:ENST00000677090.1:ENST00000421621.3:ENST00000424864.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	50	2	3.49869	3.9331199999999997	4.36755	0.0300552	0.00108004	0.129138	0.0300133
chr16	307206	307305	6426400	0	-	0.626263	(0.57,1]	chr16	617488	24	INTRON	INTRON	AXIN1	ENSG00000103126.15	ENST00000262320.8:ENST00000461023.5:ENST00000354866.7:ENST00000481769.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	68	2	3.50161	3.93309	4.36457	3.17447e-5	2.99869e-6	0.00449886	0.00121975
chr16	18119072	18119171	6453824	0	-	0.454545	(0.44,0.476]	chr16	621960	1153	INTRON	INTRON	ENSG00000259929:ENSG00000260242	ENSG00000259929.5:ENSG00000260242.1	ENST00000567304.1:ENST00000563866.1	lncRNA	lncRNA	lncRNA	lncRNA	1	45	2	2.80275	3.9328149999999997	5.06288	0.0146513	0.00102416	0.0982604	0.0294041
chr7	131423561	131423660	3417407	0	+	0.535354	(0.515,0.57]	chr7	319231	85	INTRON	INTRON	MKLN1	ENSG00000128585.18	ENST00000421797.6:ENST00000352689.11:ENST00000494785.5:ENST00000458153.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	144	2	3.56997	3.9328149999999997	4.29566	4.4136e-5	1.92292e-7	0.00570424	2.04387e-4
chr3	43698775	43698875	1410252	0	+	0.39	(0.378,0.408]	chr3	147916	1	SS3_PROX	SS3_PROX:INTRON	ABHD5	ENSG00000011198.10	ENST00000643520.1:ENST00000456453.5:ENST00000458276.7:ENST00000486764.1:ENST00000649763.1:ENST00000643140.1:ENST00000643500.1:ENST00000644371.2:ENST00000013894.3:ENST00000646378.1:ENST00000643477.1:ENST00000646799.1:ENST00000454293.2:ENST00000642351.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	71	2	2.63629	3.932765	5.22924	0.00172721	0.001315	0.0374701	0.0333932
chr1	155691541	155691641	229537	0	+	0.34	(0.32,0.35]	chr1	26994	19	INTRON	INTRON	DAP3	ENSG00000132676.16	ENST00000471642.6:ENST00000471214.5:ENST00000343043.7:ENST00000368336.10:ENST00000535183.5:ENST00000421487.6:ENST00000496863.5:ENST00000465375.5:ENST00000462002.5:ENST00000470830.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	46	2	2.96746	3.93257	4.89768	0.00815799	0.00793135	0.0810802	0.076155
chr2	135527506	135527606	1233466	0	-	0.34	(0.32,0.35]	chr2	131245	227	INTRON	INTRON	ZRANB3	ENSG00000121988.18	ENST00000264159.11:ENST00000401392.5:ENST00000536680.5:ENST00000403017.2:ENST00000452187.6:ENST00000492193.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	46	2	2.96746	3.93257	4.89768	0.00815799	0.00793135	0.0810802	0.076155
chr8	102379606	102379706	4012425	0	-	0.28	[0,0.28]	chr8	367237	176	INTRON	INTRON	UBR5	ENSG00000104517.13	ENST00000520539.6:ENST00000220959.8:ENST00000521922.5	protein_coding	protein_coding	protein_coding	protein_coding	2	71	2	2.56073	3.932485	5.30424	0.00743095	0.00584781	0.0772645	0.0667594
chr20	31715248	31715348	7325296	0	-	0.38	(0.378,0.408]	chr20	745996	303	INTRON	INTRON	BCL2L1	ENSG00000171552.14	ENST00000376055.9:ENST00000376062.6:ENST00000307677.5:ENST00000420488.6:ENST00000439267.2:ENST00000678563.1:ENST00000456404.6:ENST00000676942.1:ENST00000676582.1:ENST00000434194.2:ENST00000677194.1:ENST00000678671.1:ENST00000677494.1:ENST00000422920.2:ENST00000450273.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	70	2	2.04622	3.932465	5.81871	0.0149927	1.62088e-4	0.107704	0.0116382
chr2	24808999	24809099	712247	0	+	0.34	(0.32,0.35]	chr2	82368	88	INTRON	INTRON	CENPO	ENSG00000138092.11	ENST00000473706.5:ENST00000491031.5:ENST00000380834.7:ENST00000486527.6:ENST00000260662.2:ENST00000498362.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	46	2	2.84569	3.93243	5.01917	0.0121137	0.0055659	0.0962599	0.0648867
chr2	229810190	229810284	1340527	0	-	0.329787	(0.32,0.35]	chr2	140377	15	INTRON	INTRON	TRIP12	ENSG00000153827.14	ENST00000675453.1:ENST00000675903.1:ENST00000283943.9:ENST00000675423.1:ENST00000389044.8:ENST00000389045.7:ENST00000479037.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	46	2	2.84569	3.93243	5.01917	0.0121137	0.0055659	0.0962599	0.0648867
chr21	43796140	43796237	7413682	0	+	0.43299	(0.408,0.44]	chr21	755630	5	INTRON	INTRON	RRP1	ENSG00000160214.13	ENST00000475534.5:ENST00000483896.5:ENST00000497547.2:ENST00000467112.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	46	2	3.00595	3.932335	4.85872	0.00781452	0.00221911	0.0759016	0.0435144
chr1	212750495	212750595	634367	0	-	0.41	(0.408,0.44]	chr1	74949	105	INTRON	INTRON	NSL1	ENSG00000117697.15	ENST00000366977.8:ENST00000366978.5:ENST00000366976.3:ENST00000626725.1	protein_coding	protein_coding	protein_coding	protein_coding	5	87	2	1.74813	3.93225	6.11637	0.0163902	3.037e-5	0.109715	0.00456454
chr13	113638296	113638396	5550380	0	+	0.45	(0.44,0.476]	chr13	530425	4	SS5_PROX	SS5_PROX:INTRON	TFDP1	ENSG00000198176.13	ENST00000375370.10:ENST00000544902.5:ENST00000494812.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	97	2	3.63638	3.93224	4.2281	4.74104e-4	3.76811e-5	0.0196816	0.00523787
chr16	18834706	18834791	6457118	0	-	0.447059	(0.44,0.476]	chr16	622642	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SMG1	ENSG00000157106.18	ENST00000446231.7:ENST00000565324.5	protein_coding	protein_coding	protein_coding	protein_coding	1	43	2	3.25801	3.93224	4.60647	0.0102339	0.00248185	0.0850389	0.0460771
chr4	143392926	143393025	2054639	0	+	0.333333	(0.32,0.35]	chr4	203743	9	INTRON	INTRON	GAB1	ENSG00000109458.9	ENST00000262995.8:ENST00000262994.9:ENST00000514639.5:ENST00000515366.5:ENST00000505913.5:ENST00000515388.1:ENST00000509992.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	62	2	2.35591	3.93222	5.50853	0.0128129	0.0010959399999999999	0.0990564	0.0304174
chr6	47534752	47534851	2874136	0	+	0.363636	(0.35,0.378]	chr6	272737	6	INTRON	INTRON	CD2AP	ENSG00000198087.7	ENST00000359314.5:ENST00000477159.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	60	2	2.76192	3.93209	5.10226	0.00327038	0.00265021	0.0508595	0.0474328
chr7	107409305	107409404	3611477	0	-	0.363636	(0.35,0.378]	chr7	336688	362	INTRON	INTRON	COG5	ENSG00000164597.15	ENST00000297135.9:ENST00000347053.8:ENST00000393603.7:ENST00000484237.5:ENST00000475638.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	60	2	2.76192	3.93209	5.10226	0.00327038	0.00265021	0.0508595	0.0474328
chr19	5591893	5591981	7124031	0	-	0.431818	(0.408,0.44]	chr19	716964	1	SS3_PROX	SS3_PROX:INTRON	SAFB2	ENSG00000130254.12	ENST00000252542.9:ENST00000589925.1:ENST00000590000.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	58	2	2.906	3.932085	4.95817	0.00372419	0.00131817	0.0535094	0.0333932
chr2	15341925	15342025	1070937	0	-	0.36	(0.35,0.378]	chr2	114279	108	INTRON	INTRON	NBAS	ENSG00000151779.13	ENST00000281513.10:ENST00000442506.5	protein_coding	protein_coding	protein_coding	protein_coding	2	61	2	2.87835	3.9319800000000003	4.98561	0.00474226	0.00160563	0.0600445	0.0367961
chr22	19467172	19467272	7554774	0	-	0.36	(0.35,0.378]	chr22	772375	20	EXON_MRNA	EXON_MRNA:INTRON	UFD1	ENSG00000070010.19	ENST00000263202.15:ENST00000399523.5:ENST00000459854.5:ENST00000466373.1:ENST00000447868.5:ENST00000421968.6:ENST00000484101.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	65	2	2.4475	3.931825	5.41615	0.0106974	3.21724e-4	0.0862205	0.0159645
chr10	22323764	22323864	4406631	0	+	0.4	(0.378,0.408]	chr10	406647	12	INTRON	INTRON	COMMD3-BMI1:BMI1	ENSG00000269897.5:ENSG00000168283.14	ENST00000475460.6:ENST00000602390.5:ENST00000489125.2:ENST00000463409.6:ENST00000417470.1:ENST00000602395.1:ENST00000376663.8:ENST00000602523.1:ENST00000456675.2:ENST00000442508.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	43	2	3.05393	3.9318049999999998	4.80968	0.00679828	0.00551532	0.0711802	0.0672816
chrX	151406330	151406428	7735203	0	+	0.316327	(0.28,0.32]	chrX	791463	14	UTR3	UTR3:EXON_MRNA	VMA21	ENSG00000160131.14	ENST00000330374.7	protein_coding	protein_coding	protein_coding	protein_coding	2	116	2	3.65934	3.9317149999999996	4.20409	0.00103147	4.29699e-5	0.029231300000000002	0.00530629
chr5	111505829	111505925	2702735	0	-	0.40625	(0.378,0.408]	chr5	254412	1	SS5_PROX	SS5_PROX:INTRON	STARD4	ENSG00000164211.13	ENST00000296632.8:ENST00000512160.5:ENST00000511137.5:ENST00000502931.5:ENST00000505803.5:ENST00000502322.5:ENST00000509887.5:ENST00000511569.5:ENST00000511436.5:ENST00000510346.5:ENST00000455172.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	69	2	2.35168	3.93171	5.51174	0.0046563	5.93655e-4	0.0629753	0.0225024
chr19	35169165	35169265	7054485	0	+	0.4	(0.378,0.408]	chr19	703840	2	SS3_PROX	SS3_PROX:INTRON	FXYD5	ENSG00000089327.15	ENST00000392219.7:ENST00000592290.5:ENST00000590686.5:ENST00000541435.6:ENST00000496493.5:ENST00000342879.7:ENST00000588699.5:ENST00000423817.7:ENST00000591716.6:ENST00000586925.1:ENST00000392217.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	44	2	3.27907	3.93167	4.58427	0.0128325	0.0023379	0.0926667	0.0442989
chr15	27200663	27200763	5984450	0	+	0.45	(0.44,0.476]	chr15	569164	1735	INTRON	INTRON	GABRG3	ENSG00000182256.13	ENST00000615808.5:ENST00000555083.5	protein_coding	protein_coding	protein_coding	protein_coding	1	43	2	2.66433	3.931565	5.1988	0.0194358	0.00151532	0.119831	0.0352794
chr16	67764983	67765081	6505264	0	-	0.397959	(0.378,0.408]	chr16	629645	11	INTRON	INTRON	RANBP10	ENSG00000141084.12	ENST00000317506.8:ENST00000448631.6:ENST00000602506.5:ENST00000602677.5:ENST00000602525.5:ENST00000602638.5:ENST00000602815.5:ENST00000602887.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	43	2	2.85854	3.931565	5.00459	0.0107837	0.00371142	0.0920575	0.0535094
chr1	39841546	39841644	427835	0	-	0.397959	(0.378,0.408]	chr1	51960	36	UTR3	UTR3:EXON_MRNA	TRIT1	ENSG00000043514.17	ENST00000316891.10:ENST00000648678.1:ENST00000537440.5:ENST00000372818.5:ENST00000462797.5:ENST00000441669.6:ENST00000495175.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	88	2	2.07903	3.93138	5.78373	0.00428711	1.89312e-4	0.0599065	0.012565
chr11	14498337	14498437	4918314	0	-	0.29	(0.28,0.32]	chr11	460964	1	SS5_PROX	SS5_PROX:INTRON	COPB1	ENSG00000129083.13	ENST00000249923.7:ENST00000439561.7:ENST00000534234.5:ENST00000529866.5:ENST00000534771.1:ENST00000533096.5:ENST00000533533.5:ENST00000529210.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	54	2	2.32871	3.931365	5.53402	0.0581621	4.0843e-4	0.167723	0.0181306
chr6	31755507	31755606	2843650	0	+	0.535354	(0.515,0.57]	chr6	267818	15	INTRON	INTRON	MSH5:MSH5-SAPCD1	ENSG00000204410.16:ENSG00000255152.8	ENST00000375755.8:ENST00000375750.9:ENST00000650702.1:ENST00000493662.6:ENST00000375703.7:ENST00000375740.7:ENST00000423982.6:ENST00000463144.5:ENST00000450148.5:ENST00000468602.5:ENST00000468136.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	15	465	2	3.62719	3.931145	4.2351	1.52011e-8	8.25481e-10	3.85787e-5	6.33377e-6
chr14	23324772	23324867	5656992	0	+	0.463158	(0.44,0.476]	chr14	539473	6	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	BCL2L2-PABPN1:PABPN1	ENSG00000258643.6:ENSG00000100836.11	ENST00000678502.1:ENST00000553781.5:ENST00000557008.2:ENST00000216727.9:ENST00000397276.6:ENST00000556821.5:ENST00000555295.1	protein_coding	protein_coding	protein_coding	protein_coding	4	149	2	3.61163	3.931095	4.25056	3.33797e-5	4.44479e-6	0.00487221	0.00142022
chr16	88600348	88600448	6418565	0	+	0.49	(0.476,0.515]	chr16	615819	4	SS5_PROX	SS5_PROX:INTRON	ZC3H18	ENSG00000158545.16	ENST00000301011.10:ENST00000452588.6:ENST00000567085.1:ENST00000568072.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	84	2	2.14989	3.93102	5.71215	0.00611105	5.54639e-5	0.0676501	0.00609037
chr3	14489151	14489250	1370285	0	+	0.30303	(0.28,0.32]	chr3	144406	43	UTR3	UTR3:EXON_MRNA	SLC6A6	ENSG00000131389.18	ENST00000613060.4:ENST00000618278.4:ENST00000649500.1:ENST00000622186.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	211	2	3.89978	3.930865	3.96195	2.81712e-5	7.14936e-6	0.00436925	0.00189566
chr17	58765154	58765254	6637736	0	+	0.4	(0.378,0.408]	chr17	648237	83	INTRON	INTRON	PPM1E	ENSG00000175175.6	ENST00000308249.4	protein_coding	protein_coding	protein_coding	protein_coding	1	44	2	2.63247	3.930855	5.22924	0.0215745	0.00172721	0.123836	0.0374701
chr17	76561546	76561633	6677376	0	+	0.390805	(0.378,0.408]	chr17	652144	4	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	SNHG16	ENSG00000163597.16	ENST00000661348.2:ENST00000670737.2:ENST00000653677.2:ENST00000493536.7:ENST00000667091.1:ENST00000586942.7:ENST00000591956.1:ENST00000586846.2:ENST00000692197.1:ENST00000448136.5:ENST00000668511.1:ENST00000590435.5:ENST00000587838.2:ENST00000686755.1	lncRNA	lncRNA	lncRNA	lncRNA	1	44	2	2.63247	3.930855	5.22924	0.0215745	0.00172721	0.123836	0.0374701
chr1	227619469	227619569	329616	0	+	0.45	(0.44,0.476]	chr1	37980	365	INTRON	INTRON	ZNF678	ENSG00000181450.18	ENST00000608949.5:ENST00000465266.1:ENST00000343776.10:ENST00000440339.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	46	2	3.07862	3.930775	4.78293	0.0060153	0.00292033	0.0674604	0.0494641
chr14	58289504	58289600	5904657	0	-	0.3125	(0.28,0.32]	chr14	560835	3	INTRON	INTRON	PSMA3-AS1	ENSG00000257621.9	ENST00000554360.5:ENST00000556002.5:ENST00000555275.5:ENST00000554378.5:ENST00000555707.5:ENST00000556400.5:ENST00000557660.5:ENST00000553657.5:ENST00000555037.1:ENST00000551597.6	lncRNA	lncRNA	lncRNA	lncRNA	1	49	2	3.1268	3.93077	4.73474	0.0162835	0.00508956	0.101453	0.0646039
chr2	127347789	127347889	1223410	0	-	0.32	(0.28,0.32]	chr2	130286	42	INTRON	INTRON	MAP3K2	ENSG00000169967.17	ENST00000682094.1:ENST00000409947.5	protein_coding	protein_coding	protein_coding	protein_coding	1	49	2	3.1268	3.93077	4.73474	0.0162835	0.00508956	0.101453	0.0646039
chr12	122601750	122601850	5241384	0	+	0.23	[0,0.28]	chr12	497820	1	SS3_ADJ	SS3_ADJ:SS3_PROX:SS5_PROX:INTRON	KNTC1	ENSG00000184445.12	ENST00000450485.6:ENST00000333479.12:ENST00000535186.1:ENST00000545065.1:ENST00000377192.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	52	2	2.80396	3.93072	5.05748	0.0161429	0.0113653	0.109464	0.0886611
chr8	140941177	140941277	4079474	0	-	0.37	(0.35,0.378]	chr8	370572	67	INTRON	INTRON	PTK2	ENSG00000169398.20	ENST00000696786.1:ENST00000522684.5:ENST00000395218.3:ENST00000521059.5:ENST00000519993.5:ENST00000340930.7:ENST00000519419.5:ENST00000524357.5:ENST00000521791.5:ENST00000523067.5:ENST00000520828.5:ENST00000519881.5:ENST00000520892.5:ENST00000523803.5:ENST00000521907.5:ENST00000517453.5:ENST00000520045.5:ENST00000521332.5:ENST00000524040.5:ENST00000523679.1:ENST00000524257.5:ENST00000523797.1:ENST00000519635.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	78	2	2.10109	3.930695	5.7603	0.014685	6.3427e-5	0.0983813	0.00658818
chr18	9711543	9711643	6871804	0	+	0.43	(0.408,0.44]	chr18	680774	27	INTRON	INTRON	RAB31	ENSG00000168461.13	ENST00000578734.5:ENST00000578921.6:ENST00000581109.1:ENST00000583137.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	61	2	2.36185	3.9305950000000003	5.49934	0.0133164	1.5076e-4	0.094512	0.0106137
chr18	13051645	13051742	6877192	0	+	0.494845	(0.476,0.515]	chr18	681436	14	INTRON	INTRON	CEP192	ENSG00000101639.19	ENST00000325971.12:ENST00000506447.5:ENST00000589596.5:ENST00000513432.5:ENST00000511820.6:ENST00000510237.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	47	2	3.24596	3.930575	4.61519	0.00528365	0.00322919	0.0656295	0.0507087
chr3	187014300	187014400	1587020	0	+	0.5	(0.476,0.515]	chr3	164349	79	INTRON	INTRON	ST6GAL1	ENSG00000073849.16	ENST00000676786.1:ENST00000169298.8:ENST00000457772.6:ENST00000455441.5:ENST00000427315.5:ENST00000677292.1:ENST00000458216.5:ENST00000430309.5:ENST00000417392.5:ENST00000438590.5:ENST00000448408.5:ENST00000676633.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	47	2	3.24596	3.930575	4.61519	0.00528365	0.00322919	0.0656295	0.0507087
chr17	35816739	35816839	6601157	0	+	0.29	(0.28,0.32]	chr17	642403	1	SS3_PROX	SS3_PROX:INTRON	TAF15	ENSG00000270647.7	ENST00000605844.6:ENST00000603777.6:ENST00000604694.2:ENST00000689923.1:ENST00000603393.6:ENST00000685897.1:ENST00000603427.6:ENST00000604879.6:ENST00000605649.6:ENST00000604360.6:ENST00000604841.5:ENST00000605197.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	51	2	3.35108	3.9304449999999997	4.50981	0.0275554	0.00221345	0.123904	0.0435144
chr4	17840309	17840407	1927364	0	+	0.285714	(0.28,0.32]	chr4	193797	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NCAPG	ENSG00000109805.10	ENST00000251496.7:ENST00000514176.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	51	2	3.35108	3.9304449999999997	4.50981	0.0275554	0.00221345	0.123904	0.0435144
chr15	80079215	80079315	6071234	0	+	0.58	(0.57,1]	chr15	578322	35	INTRON	INTRON	ZFAND6	ENSG00000086666.19	ENST00000613266.4:ENST00000561060.5:ENST00000559157.5:ENST00000261749.11:ENST00000561012.5:ENST00000564367.5:ENST00000558494.5:ENST00000618205.4:ENST00000560470.5:ENST00000560228.5:ENST00000559835.5:ENST00000559775.5:ENST00000558688.5:ENST00000560976.5:ENST00000560392.5:ENST00000558390.5:ENST00000558272.5:ENST00000557793.1:ENST00000616533.4:ENST00000558087.5:ENST00000558997.5:ENST00000558724.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	68	2	3.56546	3.9303749999999997	4.29529	2.14398e-5	4.35224e-6	0.00377331	0.00140234
chr1	245908136	245908236	674705	0	-	0.39	(0.378,0.408]	chr1	79681	439	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000366517.5:ENST00000366516.5:ENST00000490107.6:ENST00000470510.5:ENST00000493441.5:ENST00000488153.5:ENST00000492487.5:ENST00000391836.3:ENST00000464398.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	132	2	3.65327	3.930325	4.20738	5.02926e-5	2.43547e-5	0.0061299	0.00386122
chr17	72907458	72907558	6833096	0	-	0.46	(0.44,0.476]	chr17	675178	573	INTRON	INTRON	SLC39A11	ENSG00000133195.12	ENST00000255559.8:ENST00000542342.6:ENST00000582769.5:ENST00000579491.1:ENST00000584129.1:ENST00000579732.5:ENST00000580557.5:ENST00000583146.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	45	2	2.67572	3.930265	5.18481	0.0212064	6.21872e-4	0.113017	0.0223951
chr1	51255365	51255465	98368	0	+	0.51	(0.476,0.515]	chr1	13196	181	INTRON	INTRON	RNF11	ENSG00000123091.5	ENST00000242719.4:ENST00000494873.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	43	2	3.2463	3.93016	4.61402	0.00947755	0.00262374	0.0817766	0.0470772
chr15	92974541	92974634	6104464	0	+	0.494624	(0.476,0.515]	chr15	581517	1	SS3_PROX	SS3_PROX:INTRON	CHD2	ENSG00000173575.22	ENST00000626874.2:ENST00000394196.9:ENST00000635856.1:ENST00000637572.1:ENST00000636881.1:ENST00000628118.1:ENST00000625463.1:ENST00000636410.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	43	2	3.2463	3.93016	4.61402	0.00947755	0.00262374	0.0817766	0.0470772
chr3	37252482	37252582	1395846	0	+	0.35	(0.32,0.35]	chr3	146319	6	INTRON	INTRON	GOLGA4	ENSG00000144674.17	ENST00000435830.6:ENST00000444882.5:ENST00000356847.8:ENST00000450863.6:ENST00000361924.7:ENST00000429018.5:ENST00000431105.1:ENST00000419177.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	86	2	2.27097	3.9301	5.58923	0.00347642	8.12357e-4	0.0540643	0.0263656
chr1	42176637	42176736	430832	0	-	0.343434	(0.32,0.35]	chr1	52259	2	UTR3	UTR3:EXON_MRNA	FOXJ3	ENSG00000198815.9	ENST00000372573.5:ENST00000372572.5:ENST00000372571.5:ENST00000361776.5:ENST00000545068.5:ENST00000361346.6	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	3.91486	3.930075	3.94529	0.0693433	0.0450361	0.184298	0.163255
chr1	51385295	51385395	452989	0	-	0.33	(0.32,0.35]	chr1	54311	189	INTRON	INTRON	EPS15	ENSG00000085832.17	ENST00000371733.8:ENST00000371730.6	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	3.91486	3.930075	3.94529	0.0693433	0.0450361	0.184298	0.163255
chr1	52241993	52242093	102612	0	+	0.35	(0.32,0.35]	chr1	13486	20	INTRON	INTRON	ZFYVE9	ENSG00000157077.16	ENST00000287727.8:ENST00000371591.2:ENST00000357206.6:ENST00000361625.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	21	2	3.91486	3.930075	3.94529	0.0693433	0.0450361	0.184298	0.163255
chr1	84505005	84505105	496009	0	-	0.33	(0.32,0.35]	chr1	58764	3	SS5_PROX	SS5_PROX:INTRON	GNG5	ENSG00000174021.12	ENST00000689285.1:ENST00000370645.9:ENST00000370641.3:ENST00000686161.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	21	2	3.91486	3.930075	3.94529	0.0693433	0.0450361	0.184298	0.163255
chr10	74202237	74202337	4456280	0	+	0.34	(0.32,0.35]	chr10	411541	10	INTRON	INTRON	ADK	ENSG00000156110.15	ENST00000672429.1:ENST00000539909.6:ENST00000286621.7:ENST00000478611.2:ENST00000673352.1:ENST00000673310.1:ENST00000672920.1:ENST00000672394.1:ENST00000372734.5:ENST00000673027.1:ENST00000541550.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	21	2	3.91486	3.930075	3.94529	0.0693433	0.0450361	0.184298	0.163255
chr10	86484141	86484240	4658986	0	-	0.323232	(0.32,0.35]	chr10	429282	98	INTRON	INTRON	WAPL	ENSG00000062650.20	ENST00000298767.10	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	3.91486	3.930075	3.94529	0.0693433	0.0450361	0.184298	0.163255
chr10	97487732	97487831	4676391	0	-	0.323232	(0.32,0.35]	chr10	431189	32	INTRON	INTRON	MMS19	ENSG00000155229.21	ENST00000370782.6:ENST00000438925.7:ENST00000415383.5:ENST00000355839.10:ENST00000327238.14:ENST00000437002.5:ENST00000441194.5:ENST00000483626.5:ENST00000422685.5:ENST00000448660.5:ENST00000439048.1:ENST00000477575.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	21	2	3.91486	3.930075	3.94529	0.0693433	0.0450361	0.184298	0.163255
chr11	68504244	68504344	4817768	0	+	0.33	(0.32,0.35]	chr11	448907	431	INTRON	INTRON	PPP6R3	ENSG00000110075.15	ENST00000530427.5:ENST00000528635.5:ENST00000529907.5:ENST00000533127.5:ENST00000534534.5:ENST00000529344.5:ENST00000524845.5:ENST00000393800.7:ENST00000265637.8:ENST00000524904.5:ENST00000393801.7:ENST00000265636.9:ENST00000529710.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	21	2	3.91486	3.930075	3.94529	0.0693433	0.0450361	0.184298	0.163255
chr11	87146049	87146149	4843895	0	+	0.35	(0.32,0.35]	chr11	451856	543	INTRON	INTRON	TMEM135	ENSG00000166575.17	ENST00000340353.11:ENST00000529023.5:ENST00000526733.5:ENST00000305494.6:ENST00000532959.5:ENST00000525018.5:ENST00000531800.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	21	2	3.91486	3.930075	3.94529	0.0693433	0.0450361	0.184298	0.163255
chr12	40097459	40097559	5312068	0	-	0.33	(0.32,0.35]	chr12	505253	489	INTRON	INTRON	SLC2A13	ENSG00000151229.13	ENST00000280871.9:ENST00000380858.1	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	3.91486	3.930075	3.94529	0.0693433	0.0450361	0.184298	0.163255
chr13	52418154	52418252	5598996	0	-	0.336735	(0.32,0.35]	chr13	535305	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	VPS36	ENSG00000136100.14	ENST00000650274.1:ENST00000611132.4:ENST00000378060.9:ENST00000649498.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	21	2	3.91486	3.930075	3.94529	0.0693433	0.0450361	0.184298	0.163255
chr14	55309192	55309292	5726174	0	+	0.35	(0.32,0.35]	chr14	543460	107	INTRON	INTRON	FBXO34	ENSG00000178974.11	ENST00000681400.1:ENST00000681904.1:ENST00000679934.1:ENST00000681074.1:ENST00000680682.1:ENST00000680658.1:ENST00000313833.5:ENST00000554940.1:ENST00000440021.1:ENST00000555087.1:ENST00000557647.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	21	2	3.91486	3.930075	3.94529	0.0693433	0.0450361	0.184298	0.163255
chr14	68079044	68079144	5767968	0	+	0.33	(0.32,0.35]	chr14	547072	90	INTRON	INTRON	RAD51B	ENSG00000182185.19	ENST00000487861.5:ENST00000471583.6:ENST00000479335.5:ENST00000487270.5:ENST00000488612.5:ENST00000553595.5:ENST00000497460.5:ENST00000492236.5:ENST00000554244.5:ENST00000478014.5:ENST00000469165.6:ENST00000460526.5:ENST00000468382.5:ENST00000557045.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	21	2	3.91486	3.930075	3.94529	0.0693433	0.0450361	0.184298	0.163255
chr15	77369123	77369223	6237124	0	-	0.33	(0.32,0.35]	chr15	595315	35	INTRON	INTRON	PEAK1	ENSG00000173517.11	ENST00000560626.6:ENST00000682557.1:ENST00000558305.5:ENST00000564328.5:ENST00000567808.5:ENST00000567337.5:ENST00000569159.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	21	2	3.91486	3.930075	3.94529	0.0693433	0.0450361	0.184298	0.163255
chr16	68165345	68165445	6371030	0	+	0.35	(0.32,0.35]	chr16	612215	69	INTRON	INTRON	NFATC3	ENSG00000072736.19	ENST00000563319.5:ENST00000569766.5:ENST00000553077.5:ENST00000566301.5:ENST00000549350.5:ENST00000566893.5:ENST00000575270.5:ENST00000561714.5:ENST00000346183.8:ENST00000568466.6:ENST00000539828.6:ENST00000349223.9:ENST00000329524.8:ENST00000379165.8:ENST00000562926.5:ENST00000570212.5:ENST00000563796.5:ENST00000567152.5:ENST00000563288.5:ENST00000535127.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	21	2	3.91486	3.930075	3.94529	0.0693433	0.0450361	0.184298	0.163255
chr17	46051701	46051801	6783445	0	-	0.35	(0.32,0.35]	chr17	669181	6	INTRON	INTRON	KANSL1	ENSG00000120071.15	ENST00000574590.6:ENST00000572904.6:ENST00000432791.7:ENST00000575318.6:ENST00000638275.1:ENST00000262419.10:ENST00000648792.1:ENST00000639531.1:ENST00000639150.1:ENST00000639853.1:ENST00000571698.2:ENST00000639375.1:ENST00000577114.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	21	2	3.91486	3.930075	3.94529	0.0693433	0.0450361	0.184298	0.163255
chr18	55589296	55589387	6978715	0	-	0.32967	(0.32,0.35]	chr18	690470	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	TCF4	ENSG00000196628.20	ENST00000636400.2:ENST00000636751.2:ENST00000629387.2:ENST00000537578.5:ENST00000568740.5:ENST00000565018.6:ENST00000398339.5:ENST00000564403.6:ENST00000568169.5:ENST00000564343.5:ENST00000562543.5:ENST00000569357.4:ENST00000674598.1:ENST00000627320.2:ENST00000630224.2:ENST00000565124.4:ENST00000637941.1:ENST00000628391.1:ENST00000565393.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	21	2	3.91486	3.930075	3.94529	0.0693433	0.0450361	0.184298	0.163255
chr2	73397356	73397456	808644	0	+	0.34	(0.32,0.35]	chr2	90516	108	INTRON	INTRON	ALMS1	ENSG00000116127.20	ENST00000484298.5:ENST00000613296.6:ENST00000614410.4:ENST00000682889.1:ENST00000682675.1:ENST00000684148.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	21	2	3.91486	3.930075	3.94529	0.0693433	0.0450361	0.184298	0.163255
chr2	111363179	111363278	1210481	0	-	0.323232	(0.32,0.35]	chr2	128888	22	EXON_LNCRNA	EXON_LNCRNA:INTRON	MIR4435-2HG	ENSG00000172965.17	ENST00000645030.2:ENST00000642191.1:ENST00000673798.1:ENST00000645051.2:ENST00000673649.1:ENST00000673962.1:ENST00000674132.1:ENST00000669658.1:ENST00000669917.1:ENST00000661559.1:ENST00000653687.1:ENST00000667670.1:ENST00000609220.2:ENST00000656760.1:ENST00000609902.6:ENST00000666683.1:ENST00000674070.1:ENST00000662335.1:ENST00000664422.1:ENST00000673775.1:ENST00000662889.1:ENST00000665096.1:ENST00000674092.1:ENST00000673958.1:ENST00000673770.1:ENST00000673961.1:ENST00000658936.1:ENST00000662635.1:ENST00000666204.1:ENST00000659458.1:ENST00000664443.1:ENST00000670295.1:ENST00000661655.1:ENST00000666390.1:ENST00000659079.1:ENST00000660442.1:ENST00000664009.1:ENST00000439362.6:ENST00000654473.1:ENST00000664999.1:ENST00000673728.1:ENST00000659791.1:ENST00000666144.1:ENST00000659933.1:ENST00000670715.1:ENST00000656303.1:ENST00000666367.1:ENST00000666652.1:ENST00000669050.1:ENST00000667218.1:ENST00000656067.1:ENST00000653568.1:ENST00000643013.1:ENST00000673866.1:ENST00000673700.1:ENST00000443467.6:ENST00000451884.6:ENST00000669875.1:ENST00000673653.1:ENST00000673988.1:ENST00000661945.1:ENST00000669515.1:ENST00000431385.6:ENST00000655573.1:ENST00000656416.1:ENST00000662384.1:ENST00000674037.1:ENST00000432818.5:ENST00000674013.1:ENST00000661707.1:ENST00000444301.5:ENST00000673964.1:ENST00000673845.1:ENST00000673756.1:ENST00000673960.1:ENST00000673804.1:ENST00000673632.1:ENST00000453478.2:ENST00000673937.1:ENST00000673654.1	lncRNA	lncRNA	lncRNA	lncRNA	0	21	2	3.91486	3.930075	3.94529	0.0693433	0.0450361	0.184298	0.163255
chr2	131504348	131504445	867069	0	+	0.340206	(0.32,0.35]	chr2	97366	25	INTRON	INTRON	SMPD4BP	ENSG00000152117.18	ENST00000438378.2:ENST00000415574.6:ENST00000692700.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript:transcribed_processed_pseudogene	0	21	2	3.91486	3.930075	3.94529	0.0693433	0.0450361	0.184298	0.163255
chr2	177308170	177308270	1276288	0	-	0.35	(0.32,0.35]	chr2	134727	200	INTRON	INTRON	NFE2L2:ENSG00000213963	ENSG00000116044.16:ENSG00000213963.6	ENST00000464747.5:ENST00000586532.5:ENST00000397057.6:ENST00000456746.5:ENST00000430416.5:ENST00000627798.2:ENST00000625449.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	0	21	2	3.91486	3.930075	3.94529	0.0693433	0.0450361	0.184298	0.163255
chr2	202286862	202286961	985132	0	+	0.343434	(0.32,0.35]	chr2	105736	20	INTRON	INTRON	NOP58	ENSG00000055044.11	ENST00000264279.10:ENST00000492688.5:ENST00000478941.1:ENST00000433543.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	21	2	3.91486	3.930075	3.94529	0.0693433	0.0450361	0.184298	0.163255
chr2	208744067	208744167	996838	0	+	0.34	(0.32,0.35]	chr2	106920	867	INTRON	INTRON	PTH2R	ENSG00000144407.10	ENST00000419079.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	0	21	2	3.91486	3.930075	3.94529	0.0693433	0.0450361	0.184298	0.163255
chr21	34807432	34807532	7446452	0	-	0.35	(0.32,0.35]	chr21	759822	76	INTRON	INTRON	RUNX1	ENSG00000159216.19	ENST00000300305.7:ENST00000675419.1:ENST00000437180.5:ENST00000344691.8:ENST00000482318.5:ENST00000399240.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	21	2	3.91486	3.930075	3.94529	0.0693433	0.0450361	0.184298	0.163255
chr22	47651111	47651211	7539544	0	+	0.34	(0.32,0.35]	chr22	770666	73	INTRON	INTRON	ENSG00000224271	ENSG00000224271.7	ENST00000650947.2:ENST00000664761.1:ENST00000665418.1:ENST00000651071.1:ENST00000650683.1:ENST00000651536.1:ENST00000652499.1:ENST00000652656.1:ENST00000652072.1:ENST00000651445.1:ENST00000423737.5:ENST00000650834.1:ENST00000650660.1:ENST00000651381.1:ENST00000651056.1:ENST00000652611.1:ENST00000652399.1:ENST00000652123.1:ENST00000651311.1:ENST00000651458.1:ENST00000650749.1:ENST00000652505.1:ENST00000652702.2:ENST00000652334.1:ENST00000650895.1:ENST00000652030.2:ENST00000651403.1:ENST00000652228.1:ENST00000651124.1:ENST00000650972.1:ENST00000651985.1:ENST00000651754.1:ENST00000651637.1:ENST00000650924.1:ENST00000651104.1:ENST00000651003.1:ENST00000652168.1:ENST00000651948.2:ENST00000651293.1:ENST00000651939.1:ENST00000650787.1:ENST00000651517.1:ENST00000651662.1:ENST00000652690.1:ENST00000651638.1:ENST00000670853.1:ENST00000652750.1:ENST00000652080.1:ENST00000651294.1:ENST00000652164.1:ENST00000651625.1:ENST00000651538.1:ENST00000650775.1:ENST00000651938.2:ENST00000652675.1	lncRNA	lncRNA	lncRNA	lncRNA	0	21	2	3.91486	3.930075	3.94529	0.0693433	0.0450361	0.184298	0.163255
chr22	47679216	47679316	7539826	0	+	0.35	(0.32,0.35]	chr22	770670	165	INTRON	INTRON	ENSG00000224271	ENSG00000224271.7	ENST00000650947.2:ENST00000664761.1:ENST00000665418.1:ENST00000651071.1:ENST00000650683.1:ENST00000651536.1:ENST00000652499.1:ENST00000652656.1:ENST00000652072.1:ENST00000651445.1:ENST00000423737.5:ENST00000650834.1:ENST00000650660.1:ENST00000651381.1:ENST00000651056.1:ENST00000652611.1:ENST00000652399.1:ENST00000652123.1:ENST00000651311.1:ENST00000651458.1:ENST00000650749.1:ENST00000652505.1:ENST00000652702.2:ENST00000652334.1:ENST00000650895.1:ENST00000652030.2:ENST00000651403.1:ENST00000652228.1:ENST00000651124.1:ENST00000650972.1:ENST00000651985.1:ENST00000651754.1:ENST00000651637.1:ENST00000650924.1:ENST00000651104.1:ENST00000651003.1:ENST00000652168.1:ENST00000651948.2:ENST00000651293.1:ENST00000651939.1:ENST00000650787.1:ENST00000651517.1:ENST00000651662.1:ENST00000652690.1:ENST00000651638.1:ENST00000670853.1:ENST00000652750.1:ENST00000652080.1:ENST00000651294.1:ENST00000652164.1:ENST00000651538.1:ENST00000650775.1:ENST00000651938.2:ENST00000652675.1	lncRNA	lncRNA	lncRNA	lncRNA	0	21	2	3.91486	3.930075	3.94529	0.0693433	0.0450361	0.184298	0.163255
chr4	1889778	1889877	1910754	0	+	0.333333	(0.32,0.35]	chr4	191711	17	INTRON	INTRON	NSD2	ENSG00000109685.19	ENST00000508803.6:ENST00000507820.5:ENST00000508355.5:ENST00000514045.5:ENST00000515806.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	21	2	3.91486	3.930075	3.94529	0.0693433	0.0450361	0.184298	0.163255
chr4	129028813	129028913	2240633	0	-	0.34	(0.32,0.35]	chr4	219291	246	INTRON	INTRON	SCLT1	ENSG00000151466.12	ENST00000651532.1:ENST00000281142.10:ENST00000503215.5:ENST00000439369.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	21	2	3.91486	3.930075	3.94529	0.0693433	0.0450361	0.184298	0.163255
chr4	143881009	143881108	2251248	0	-	0.333333	(0.32,0.35]	chr4	219936	1	INTRON	INTRON	GYPE	ENSG00000197465.14	ENST00000358615.9:ENST00000506264.5:ENST00000437468.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	21	2	3.91486	3.930075	3.94529	0.0693433	0.0450361	0.184298	0.163255
chr4	152336604	152336703	2273080	0	-	0.343434	(0.32,0.35]	chr4	221065	35	INTRON	INTRON	FBXW7	ENSG00000109670.16	ENST00000281708.10:ENST00000603548.6:ENST00000296555.11:ENST00000393956.9:ENST00000603841.1:ENST00000647183.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	21	2	3.91486	3.930075	3.94529	0.0693433	0.0450361	0.184298	0.163255
chr5	88846408	88846508	2671080	0	-	0.33	(0.32,0.35]	chr5	252833	64	INTRON	INTRON	MEF2C	ENSG00000081189.16	ENST00000504921.7:ENST00000424173.6:ENST00000340208.9:ENST00000636998.1:ENST00000637481.1:ENST00000625674.2:ENST00000437473.6:ENST00000510942.5:ENST00000506554.5:ENST00000637732.1:ENST00000514015.5:ENST00000629612.2:ENST00000636294.1:ENST00000627659.2:ENST00000508569.5:ENST00000513252.5:ENST00000502983.5:ENST00000508610.5:ENST00000503075.1:ENST00000511086.1:ENST00000515093.1:ENST00000509349.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	21	2	3.91486	3.930075	3.94529	0.0693433	0.0450361	0.184298	0.163255
chr6	107868643	107868742	3181923	0	-	0.333333	(0.32,0.35]	chr6	296352	10	UTR3	UTR3:EXON_MRNA	SEC63	ENSG00000025796.14	ENST00000369002.9	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	3.91486	3.930075	3.94529	0.0693433	0.0450361	0.184298	0.163255
chr6	156927384	156927484	3008662	0	+	0.33	(0.32,0.35]	chr6	281116	254	INTRON	INTRON	ARID1B	ENSG00000049618.24	ENST00000346085.10:ENST00000636930.2:ENST00000647938.1:ENST00000350026.10:ENST00000674298.1:ENST00000674190.1:ENST00000636748.1:ENST00000414678.7:ENST00000638000.1:ENST00000637532.1:ENST00000319584.11	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	21	2	3.91486	3.930075	3.94529	0.0693433	0.0450361	0.184298	0.163255
chr7	32611403	32611503	3513864	0	-	0.34	(0.32,0.35]	chr7	327665	177	INTRON	INTRON	DPY19L1P1	ENSG00000229358.3	ENST00000417811.2	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	0	21	2	3.91486	3.930075	3.94529	0.0693433	0.0450361	0.184298	0.163255
chr7	40055944	40056043	3311689	0	+	0.333333	(0.32,0.35]	chr7	307518	69	INTRON	INTRON	CDK13	ENSG00000065883.17	ENST00000340829.10:ENST00000181839.10:ENST00000613626.4:ENST00000646039.1:ENST00000643859.1:ENST00000484589.2:ENST00000643915.1:ENST00000645470.1:ENST00000642592.1	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	3.91486	3.930075	3.94529	0.0693433	0.0450361	0.184298	0.163255
chr7	129247932	129248032	3409701	0	+	0.33	(0.32,0.35]	chr7	318776	221	INTRON	INTRON	AHCYL2	ENSG00000158467.17	ENST00000325006.8:ENST00000446544.6	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	3.91486	3.930075	3.94529	0.0693433	0.0450361	0.184298	0.163255
chr7	153373252	153373351	3681803	0	-	0.343434	(0.32,0.35]	chr7	341707	41	INTRON	INTRON	LINC01287	ENSG00000234722.5	ENST00000647863.1:ENST00000453187.2:ENST00000664249.1:ENST00000663745.1	lncRNA	lncRNA	lncRNA	lncRNA	0	21	2	3.91486	3.930075	3.94529	0.0693433	0.0450361	0.184298	0.163255
chr8	103070409	103070507	3822020	0	+	0.326531	(0.32,0.35]	chr8	353667	18	UTR3	UTR3:EXON_MRNA	ATP6V1C1	ENSG00000155097.12	ENST00000395862.7:ENST00000518738.2	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	3.91486	3.930075	3.94529	0.0693433	0.0450361	0.184298	0.163255
chr9	32991783	32991882	4242679	0	-	0.323232	(0.32,0.35]	chr9	389989	15	INTRON	INTRON	APTX	ENSG00000137074.20	ENST00000672846.1:ENST00000672519.1:ENST00000672244.1:ENST00000673416.1:ENST00000673360.1:ENST00000379825.7:ENST00000379817.7:ENST00000397172.8:ENST00000494649.5:ENST00000436040.7:ENST00000472896.6:ENST00000465003.6:ENST00000479656.6:ENST00000673487.1:ENST00000467331.6:ENST00000482687.6:ENST00000483148.6:ENST00000672438.1:ENST00000485479.6:ENST00000673598.1:ENST00000460940.6:ENST00000309615.8:ENST00000379819.6:ENST00000672286.1:ENST00000673248.1:ENST00000474658.7:ENST00000495360.6:ENST00000672281.1:ENST00000476858.6:ENST00000672535.1:ENST00000463596.6:ENST00000379813.7:ENST00000468275.6:ENST00000477119.2:ENST00000671912.1:ENST00000464632.6:ENST00000478279.6:ENST00000480031.6:ENST00000460945.6:ENST00000494973.1:ENST00000672553.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	21	2	3.91486	3.930075	3.94529	0.0693433	0.0450361	0.184298	0.163255
chr9	123663843	123663943	4343354	0	-	0.33	(0.32,0.35]	chr9	399090	114	INTRON	INTRON	DENND1A	ENSG00000119522.17	ENST00000373624.6:ENST00000473039.5:ENST00000394215.7:ENST00000373620.7:ENST00000373618.1:ENST00000474676.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	21	2	3.91486	3.930075	3.94529	0.0693433	0.0450361	0.184298	0.163255
chr9	130610780	130610878	4213407	0	+	0.326531	(0.32,0.35]	chr9	386286	4	INTRON	INTRON	FUBP3	ENSG00000107164.16	ENST00000319725.10:ENST00000650723.1:ENST00000465949.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	21	2	3.91486	3.930075	3.94529	0.0693433	0.0450361	0.184298	0.163255
chrX	98808689	98808789	7693055	0	+	0.33	(0.32,0.35]	chrX	787215	232	INTRON	INTRON	ENSG00000281566	ENSG00000281566.3	ENST00000649508.1:ENST00000626665.3:ENST00000627700.2	lncRNA	lncRNA	lncRNA	lncRNA	0	21	2	3.91486	3.930075	3.94529	0.0693433	0.0450361	0.184298	0.163255
chrX	124031325	124031425	7717455	0	+	0.33	(0.32,0.35]	chrX	789505	2	SS5_PROX	SS5_PROX:INTRON	STAG2	ENSG00000101972.20	ENST00000218089.13:ENST00000455404.5:ENST00000483575.5:ENST00000687810.1:ENST00000687071.1:ENST00000469481.1:ENST00000371160.5:ENST00000435103.5:ENST00000687852.1:ENST00000371145.8:ENST00000692982.1:ENST00000371157.7:ENST00000691035.1:ENST00000686802.1:ENST00000691383.1:ENST00000686127.1:ENST00000371144.7:ENST00000458176.5:ENST00000466748.5:ENST00000471107.1:ENST00000428941.5:ENST00000435215.5:ENST00000394478.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	21	2	3.91486	3.930075	3.94529	0.0693433	0.0450361	0.184298	0.163255
chrX	149952788	149952876	7730415	0	+	0.329545	(0.32,0.35]	chrX	791128	6	EXON_LNCRNA	EXON_LNCRNA:INTRON	EOLA2-DT	ENSG00000235703.7	ENST00000670799.1:ENST00000654890.1:ENST00000425602.2:ENST00000449111.5:ENST00000444489.5:ENST00000669126.1:ENST00000450989.5:ENST00000452864.2:ENST00000671125.1	lncRNA	lncRNA	lncRNA	lncRNA	0	21	2	3.91486	3.930075	3.94529	0.0693433	0.0450361	0.184298	0.163255
chr17	42505045	42505144	6611774	0	+	0.474747	(0.44,0.476]	chr17	644172	18	INTRON	INTRON	ATP6V0A1	ENSG00000033627.17	ENST00000393829.6:ENST00000343619.9:ENST00000537728.5:ENST00000264649.10:ENST00000585525.5:ENST00000544137.5:ENST00000587510.5:ENST00000586201.5:ENST00000588138.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	45	2	2.86231	3.930065	4.99782	0.012214	0.0013223	0.0910127	0.0333932
chr2	84981442	84981542	820366	0	+	0.47	(0.44,0.476]	chr2	91419	88	INTRON	INTRON	KCMF1	ENSG00000176407.18	ENST00000456682.1:ENST00000409785.9:ENST00000428691.5:ENST00000453448.1	protein_coding	protein_coding	protein_coding	protein_coding	1	45	2	2.86231	3.930065	4.99782	0.012214	0.0013223	0.0910127	0.0333932
chr7	77915194	77915293	3345129	0	+	0.454545	(0.44,0.476]	chr7	311538	44	INTRON	INTRON	PHTF2	ENSG00000006576.17	ENST00000422959.7:ENST00000416283.6:ENST00000307305.12:ENST00000424760.5:ENST00000415251.6:ENST00000275575.11:ENST00000450574.5:ENST00000248550.7:ENST00000454592.5:ENST00000479515.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	45	2	2.86231	3.930065	4.99782	0.012214	0.0013223	0.0910127	0.0333932
chr9	123864361	123864461	4345367	0	-	0.46	(0.44,0.476]	chr9	399130	660	INTRON	INTRON	DENND1A	ENSG00000119522.17	ENST00000373624.6:ENST00000394215.7:ENST00000373620.7:ENST00000373618.1	protein_coding	protein_coding	protein_coding	protein_coding	1	45	2	2.86231	3.930065	4.99782	0.012214	0.0013223	0.0910127	0.0333932
chr9	128948190	128948278	4207850	0	+	0.602273	(0.57,1]	chr9	385244	3	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	NUP188	ENSG00000095319.14	ENST00000372577.2:ENST00000491990.5:ENST00000550219.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	31	2	2.52405	3.930065	5.33608	0.0263139	3.92497e-5	0.133676	0.00533644
chr16	1862911	1863010	6430263	0	-	0.363636	(0.35,0.378]	chr16	618392	4	INTRON	INTRON	MEIOB	ENSG00000162039.17	ENST00000325962.9:ENST00000470044.5:ENST00000397344.7:ENST00000496541.6:ENST00000460494.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	45	2	2.6498	3.92999	5.21018	0.0210137	0.00228003	0.122348	0.0426265
chr5	37608537	37608636	2342689	0	+	0.353535	(0.35,0.378]	chr5	226260	29	INTRON	INTRON	WDR70	ENSG00000082068.9	ENST00000504564.1:ENST00000511906.5:ENST00000265107.9:ENST00000510699.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	45	2	2.6498	3.92999	5.21018	0.0210137	0.00228003	0.122348	0.0426265
chr9	122882045	122882139	4338395	0	-	0.361702	(0.35,0.378]	chr9	398765	9	INTRON	INTRON	RC3H2	ENSG00000056586.16	ENST00000357244.7:ENST00000373670.5:ENST00000498479.5:ENST00000423239.6:ENST00000335387.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	45	2	2.6498	3.92999	5.21018	0.0210137	0.00228003	0.122348	0.0426265
chr11	2386061	2386156	4722665	0	+	0.6	(0.57,1]	chr11	436913	1	CDS_START	CDS_START:CDS:UTR5:EXON_MRNA:SS5_PROX:INTRON	CD81	ENSG00000110651.12	ENST00000475945.6:ENST00000530648.5:ENST00000263645.10:ENST00000533417.5:ENST00000492627.5:ENST00000527343.5:ENST00000464784.6:ENST00000493525.6:ENST00000381036.7:ENST00000492252.5	protein_coding	protein_coding	protein_coding	protein_coding	3	44	2	2.58898	3.929825	5.27067	0.00134929	5.68536e-5	0.0338207	0.00655354
chr7	10573072	10573172	3482510	0	-	0.24	[0,0.28]	chr7	325772	111	INTRON	INTRON	MGC4859	ENSG00000283117.1	ENST00000634803.1	lncRNA	lncRNA	lncRNA	lncRNA	1	52	2	2.8569	3.9297649999999997	5.00263	0.013822	0.013055	0.10247	0.093385
chr9	111913804	111913904	4184621	0	+	0.36	(0.35,0.378]	chr9	381684	161	INTRON	INTRON	UGCG	ENSG00000148154.10	ENST00000374279.4:ENST00000489355.1:ENST00000495085.1:ENST00000490110.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	70	2	3.37761	3.929725	4.48184	0.0191702	1.38324e-4	0.108861	0.0101276
chr9	130076880	130076962	4211186	0	+	0.414634	(0.408,0.44]	chr9	386004	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GPR107	ENSG00000148358.20	ENST00000372406.5:ENST00000372410.7:ENST00000347136.11:ENST00000493417.5:ENST00000610997.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	43	2	3.25948	3.9296349999999998	4.59979	0.0109537	0.00246454	0.0873034	0.0459102
chr1	171528443	171528543	253655	0	+	0.51	(0.476,0.515]	chr1	30152	2	INTRON	INTRON	PRRC2C	ENSG00000117523.18	ENST00000647382.2:ENST00000367742.7:ENST00000476522.5:ENST00000338920.8:ENST00000426496.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	43	2	2.65268	3.929565	5.20645	0.0201975	0.00136049	0.121243	0.0336321
chr17	50705347	50705446	6795284	0	-	0.323232	(0.32,0.35]	chr17	670788	43	INTRON	INTRON	ANKRD40	ENSG00000154945.7	ENST00000285243.7:ENST00000507114.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	50	2	2.57263	3.929465	5.2863	0.0312297	7.56575e-4	0.13151	0.0251966
chr10	11590333	11590433	4555855	0	-	0.33	(0.32,0.35]	chr10	420461	166	INTRON	INTRON	USP6NL	ENSG00000148429.15	ENST00000609104.6:ENST00000606752.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	51	2	2.37794	3.929385	5.48083	0.0498601	3.35843e-4	0.156383	0.0162819
chr14	30938518	30938618	5856990	0	-	0.34	(0.32,0.35]	chr14	556481	15	INTRON	INTRON	STRN3	ENSG00000196792.12	ENST00000355683.9:ENST00000357479.10:ENST00000555358.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	51	2	2.37794	3.929385	5.48083	0.0498601	3.35843e-4	0.156383	0.0162819
chr1	86909920	86910020	499070	0	-	0.47	(0.44,0.476]	chr1	59202	61	INTRON	INTRON	SELENOF	ENSG00000183291.18	ENST00000331835.10:ENST00000370554.5:ENST00000648872.1:ENST00000469566.5:ENST00000401030.4:ENST00000467557.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	42	2	2.9586	3.9293000000000005	4.9	0.00758318	0.00423315	0.0773151	0.0572185
chr2	71410270	71410369	807831	0	+	0.454545	(0.44,0.476]	chr2	90285	11	INTRON	INTRON	ZNF638	ENSG00000075292.19	ENST00000409544.5:ENST00000264447.9:ENST00000487638.5:ENST00000494241.5:ENST00000409407.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	42	2	2.9586	3.9293000000000005	4.9	0.00758318	0.00423315	0.0773151	0.0572185
chr4	26430053	26430144	1937793	0	+	0.472527	(0.44,0.476]	chr4	194461	1	EXON_MRNA	EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RBPJ	ENSG00000168214.22	ENST00000681799.1:ENST00000681403.1:ENST00000342295.6:ENST00000512671.6:ENST00000345843.8:ENST00000361572.10:ENST00000514380.5:ENST00000348160.9:ENST00000681506.1:ENST00000509158.6:ENST00000691085.1:ENST00000692303.1:ENST00000681856.1:ENST00000681025.1:ENST00000681679.1:ENST00000680210.1:ENST00000355476.8:ENST00000680140.1:ENST00000680511.1:ENST00000510778.7:ENST00000679698.1:ENST00000679469.1:ENST00000681484.1:ENST00000505958.6:ENST00000507561.5:ENST00000689192.1:ENST00000680928.1:ENST00000681260.1:ENST00000681093.1:ENST00000504423.2:ENST00000342320.8:ENST00000504907.5:ENST00000681264.1:ENST00000515023.6:ENST00000510725.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	42	2	2.9586	3.9293000000000005	4.9	0.00758318	0.00423315	0.0773151	0.0572185
chr15	57988216	57988316	6186751	0	-	0.33	(0.32,0.35]	chr15	589736	220	INTRON	INTRON	ALDH1A2	ENSG00000128918.15	ENST00000537372.5:ENST00000249750.9:ENST00000347587.7:ENST00000430119.6:ENST00000558231.5:ENST00000559517.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	50	2	2.79707	3.9292300000000004	5.06139	0.0170923	0.00179023	0.104099	0.0392749
chr1	1870770	1870870	362638	0	-	0.53	(0.515,0.57]	chr1	42311	307	INTRON	INTRON	GNB1	ENSG00000078369.18	ENST00000610897.4:ENST00000615252.4:ENST00000378609.9:ENST00000439272.6:ENST00000434686.6:ENST00000472614.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	108	2	3.59354	3.929195	4.26485	3.84354e-5	1.16054e-5	0.00528498	0.00251832
chr1	225868430	225868530	646086	0	-	0.47	(0.44,0.476]	chr1	76513	4	SS3_PROX	SS3_PROX:INTRON	TMEM63A	ENSG00000196187.12	ENST00000366835.8	protein_coding	protein_coding	protein_coding	protein_coding	4	78	2	1.88483	3.92918	5.97353	0.0149825	5.52284e-5	0.107704	0.00651834
chr15	78451650	78451750	6067618	0	+	0.42	(0.408,0.44]	chr15	577920	114	INTRON	INTRON	IREB2	ENSG00000136381.13	ENST00000560840.5:ENST00000559215.5:ENST00000258886.13:ENST00000558525.5:ENST00000560440.5:ENST00000558570.5:ENST00000560454.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	47	2	3.15414	3.92912	4.7041	0.00469847	0.00381677	0.0600108	0.0562562
chr10	78038760	78038856	4475930	0	+	0.520833	(0.515,0.57]	chr10	411990	9	EXON_MRNA	EXON_MRNA:INTRON	RPS24	ENSG00000138326.21	ENST00000613865.5:ENST00000435275.5:ENST00000645440.1:ENST00000440692.6:ENST00000360830.9:ENST00000372360.9:ENST00000464716.6:ENST00000645698.1:ENST00000476545.6:ENST00000465692.2:ENST00000482069.5:ENST00000645195.1:ENST00000480662.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	146	2	3.35613	3.9289750000000003	4.50182	4.42047e-6	4.30039e-6	0.00151054	0.00141599
chr12	62364832	62364932	5150612	0	+	0.41	(0.408,0.44]	chr12	487365	90	INTRON	INTRON	USP15	ENSG00000135655.16	ENST00000353364.7:ENST00000280377.10:ENST00000547317.5:ENST00000549268.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	43	2	2.66579	3.9289050000000003	5.19202	0.019342	0.0016671	0.119831	0.0369207
chr3	47633295	47633394	1683559	0	-	0.424242	(0.408,0.44]	chr3	171978	106	INTRON	INTRON	SMARCC1	ENSG00000173473.11	ENST00000254480.10:ENST00000425518.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	43	2	2.66579	3.9289050000000003	5.19202	0.019342	0.0016671	0.119831	0.0369207
chr22	21614056	21614156	7482169	0	+	0.6	(0.57,1]	chr22	763245	1	SS3_PROX	SS3_PROX:INTRON	UBE2L3	ENSG00000185651.16	ENST00000458578.6:ENST00000545681.2:ENST00000696046.1:ENST00000342192.9:ENST00000496722.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	52	2	3.75165	3.92882	4.10599	1.54884e-4	1.62785e-5	0.0113252	0.00304426
chr12	101406381	101406481	5398081	0	-	0.34	(0.32,0.35]	chr12	514854	4	SS3_PROX	SS3_PROX:INTRON	ARL1	ENSG00000120805.14	ENST00000261636.13:ENST00000539055.5:ENST00000536227.5:ENST00000551688.1:ENST00000551828.5:ENST00000551671.5:ENST00000551092.5:ENST00000549283.1:ENST00000549302.1:ENST00000548070.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	46	2	3.0247	3.928785	4.83287	0.0095071	0.00671684	0.0817766	0.0738715
chr2	113958344	113958443	854942	0	+	0.323232	(0.32,0.35]	chr2	95958	10	UTR3	UTR3:EXON_MRNA	ACTR3	ENSG00000115091.12	ENST00000263238.7:ENST00000478928.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	46	2	3.0247	3.928785	4.83287	0.0095071	0.00671684	0.0817766	0.0738715
chr7	99009855	99009955	3360649	0	+	0.35	(0.32,0.35]	chr7	313732	9	INTRON	INTRON	TRRAP	ENSG00000196367.14	ENST00000355540.7:ENST00000359863.8:ENST00000628380.2:ENST00000456197.2:ENST00000446306.7:ENST00000360902.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	46	2	3.0247	3.928785	4.83287	0.0095071	0.00671684	0.0817766	0.0738715
chr17	41851571	41851669	6769619	0	-	0.489796	(0.476,0.515]	chr17	666406	32	UTR3	UTR3:EXON_MRNA	KLHL11	ENSG00000178502.6	ENST00000319121.4	protein_coding	protein_coding	protein_coding	protein_coding	2	92	2	3.77334	3.9286250000000003	4.08391	3.52709e-4	4.74551e-5	0.0174637	0.00562068
chr21	37224964	37225060	7461940	0	-	0.479167	(0.476,0.515]	chr21	760203	17	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	VPS26C	ENSG00000157538.14	ENST00000399000.7:ENST00000497493.1:ENST00000309117.11	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	92	2	3.77334	3.9286250000000003	4.08391	3.52709e-4	4.74551e-5	0.0174637	0.00562068
chr17	59128201	59128300	6802128	0	-	0.353535	(0.35,0.378]	chr17	671849	34	INTRON	INTRON	SKA2	ENSG00000182628.13	ENST00000330137.12:ENST00000580541.1:ENST00000578105.1:ENST00000578519.5:ENST00000583927.1:ENST00000581068.5:ENST00000437036.6:ENST00000583380.5:ENST00000583976.1:ENST00000584089.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	99	2	1.9257	3.928585	5.93147	0.00586705	1.32665e-4	0.0690758	0.0104884
chr1	16896339	16896439	37864	0	+	0.53	(0.515,0.57]	chr1	4441	1556	INTRON	INTRON	CROCC	ENSG00000058453.17	ENST00000466256.6	protein_coding	processed_transcript	protein_coding	processed_transcript	1	43	2	3.35609	3.928555	4.50102	0.00510768	0.00174131	0.0646039	0.0375363
chr10	11471017	11471117	4554644	0	-	0.53	(0.515,0.57]	chr10	420376	68	INTRON	INTRON	USP6NL	ENSG00000148429.15	ENST00000609104.6:ENST00000379237.6:ENST00000277575.5	protein_coding	protein_coding	protein_coding	protein_coding	1	43	2	3.35609	3.928555	4.50102	0.00510768	0.00174131	0.0646039	0.0375363
chr19	17582300	17582395	7031180	0	+	0.473684	(0.44,0.476]	chr19	700288	10	UTR3	UTR3:EXON_MRNA	COLGALT1	ENSG00000130309.12	ENST00000252599.9:ENST00000690947.1:ENST00000690106.1:ENST00000690841.1:ENST00000593832.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	69	2	1.98146	3.928545	5.87563	0.0186013	8.84961e-5	0.117264	0.00842626
chr15	63769837	63769936	6200260	0	-	0.282828	(0.28,0.32]	chr15	591427	53	INTRON	INTRON	HERC1	ENSG00000103657.14	ENST00000443617.7:ENST00000561400.1:ENST00000559886.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	90	2	1.83325	3.92852	6.02379	0.0199548	2.44054e-4	0.120668	0.0144024
chr1	91519729	91519829	161306	0	+	0.34	(0.32,0.35]	chr1	17423	2	SS3_PROX	SS3_PROX:INTRON	CDC7	ENSG00000097046.13	ENST00000234626.11:ENST00000428239.5:ENST00000486509.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	46	2	2.78073	3.92851	5.07629	0.01481	0.00468114	0.106702	0.0600108
chr19	24052293	24052391	7044049	0	+	0.336735	(0.32,0.35]	chr19	702356	25	EXON_LNCRNA	EXON_LNCRNA:INTRON	ENSG00000268362:ZNF254	ENSG00000268362.6:ENSG00000213096.11	ENST00000664647.1:ENST00000613065.4:ENST00000656993.1:ENST00000666101.1:ENST00000653003.1:ENST00000666488.1:ENST00000594934.6:ENST00000654353.1:ENST00000662140.1:ENST00000668060.1:ENST00000660137.1:ENST00000669127.1:ENST00000652968.1:ENST00000670905.1:ENST00000658858.1:ENST00000654594.1:ENST00000654372.1:ENST00000652837.1:ENST00000654611.1:ENST00000597683.1:ENST00000671141.1:ENST00000653308.1:ENST00000659757.1:ENST00000661386.1:ENST00000668656.1:ENST00000663903.1:ENST00000668169.1:ENST00000663458.1:ENST00000662903.1:ENST00000665638.1:ENST00000670058.1:ENST00000668701.1:ENST00000655664.1:ENST00000666861.1:ENST00000664627.1:ENST00000661650.1:ENST00000667700.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	1	46	2	2.78073	3.92851	5.07629	0.01481	0.00468114	0.106702	0.0600108
chr19	52092753	52092852	7205839	0	-	0.424242	(0.408,0.44]	chr19	731310	34	INTRON	INTRON	ZNF432:ZNF841	ENSG00000256087.7:ENSG00000197608.12	ENST00000598446.1:ENST00000594440.6:ENST00000426391.6:ENST00000594295.5:ENST00000599430.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	86	2	1.85866	3.9282700000000004	5.99788	0.0106944	5.47233e-5	0.091856	0.00651589
chr1	207792831	207792924	305326	0	+	0.225806	[0,0.28]	chr1	35143	7	INTRON	INTRON	CD46	ENSG00000117335.21	ENST00000695779.1:ENST00000695777.1:ENST00000695778.1:ENST00000496723.2:ENST00000695782.1:ENST00000695781.1:ENST00000695780.1:ENST00000636114.2:ENST00000367042.6:ENST00000322875.8:ENST00000322918.9:ENST00000354848.5:ENST00000357714.5:ENST00000358170.6:ENST00000367041.5:ENST00000367047.5:ENST00000695783.1:ENST00000695784.1:ENST00000469535.5:ENST00000360212.6:ENST00000480003.5:ENST00000695786.1:ENST00000490278.2:ENST00000488596.5:ENST00000462968.2:ENST00000695788.1:ENST00000695790.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	72	2	2.05756	3.9280999999999997	5.79864	0.0352544	0.00125481	0.150301	0.0323608
chr15	41297540	41297640	6004524	0	+	0.25	[0,0.28]	chr15	571271	1	SS3_PROX	SS3_PROX:INTRON	OIP5-AS1	ENSG00000247556.6	ENST00000558945.5:ENST00000500949.6:ENST00000560706.5:ENST00000501665.2	lncRNA	lncRNA	lncRNA	lncRNA	4	100	2	2.26453	3.9278750000000002	5.59122	0.00453975	0.00247649	0.0618698	0.0446195
chr12	123583954	123584032	5445516	0	-	0.474359	(0.44,0.476]	chr12	521151	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TMED2-DT	ENSG00000247373.3	ENST00000498967.3	lncRNA	lncRNA	lncRNA	lncRNA	1	42	2	3.02366	3.9278399999999998	4.83202	0.00603307	0.00525002	0.0700813	0.0633615
chr16	4427870	4427968	6282574	0	+	0.459184	(0.44,0.476]	chr16	601382	6	INTRON	INTRON	DNAJA3	ENSG00000103423.14	ENST00000431375.6:ENST00000355296.8:ENST00000576911.5:ENST00000575106.5:ENST00000570857.5:ENST00000262375.11:ENST00000572974.1:ENST00000574895.1:ENST00000573120.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	42	2	3.02366	3.9278399999999998	4.83202	0.00603307	0.00525002	0.0700813	0.0633615
chr2	61349785	61349878	1129330	0	-	0.473118	(0.44,0.476]	chr2	121439	1	SS5_PROX	SS5_PROX:INTRON	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000453133.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	42	2	2.89047	3.92769	4.96491	0.00955699	0.0034249	0.0863913	0.0517761
chr3	138832597	138832696	1831479	0	-	0.545455	(0.515,0.57]	chr3	184062	357	INTRON	INTRON	PIK3CB	ENSG00000051382.9	ENST00000674063.1:ENST00000477593.5:ENST00000462898.5:ENST00000483968.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	54	2	2.43783	3.92769	5.41755	0.00916404	1.1703e-4	0.0812949	0.00929802
chr16	1854797	1854894	6430178	0	-	0.391753	(0.378,0.408]	chr16	618372	2	INTRON	INTRON	MEIOB	ENSG00000162039.17	ENST00000325962.9:ENST00000470044.5:ENST00000397344.7:ENST00000496541.6	protein_coding	protein_coding	protein_coding	protein_coding	9	243	2	2.75506	3.9276150000000003	5.10017	2.48117e-5	2.66928e-7	0.00391691	2.79008e-4
chr1	15922449	15922549	35421	0	+	0.32	(0.28,0.32]	chr1	4311	1	SS5_PROX	SS5_PROX:INTRON	SPEN	ENSG00000065526.12	ENST00000673875.1:ENST00000375759.8	protein_coding	protein_coding	protein_coding	protein_coding	1	53	2	2.45545	3.9275349999999998	5.39962	0.0438092	7.06751e-4	0.14901	0.0241881
chr7	92252615	92252715	3352858	0	+	0.3	(0.28,0.32]	chr7	312479	57	INTRON	INTRON	ANKIB1	ENSG00000001629.10	ENST00000265742.8	protein_coding	protein_coding	protein_coding	protein_coding	1	53	2	2.45545	3.9275349999999998	5.39962	0.0438092	7.06751e-4	0.14901	0.0241881
chr6	169667286	169667385	3266772	0	-	0.212121	[0,0.28]	chr6	303226	2	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	WDR27	ENSG00000184465.16	ENST00000448612.6:ENST00000648472.1:ENST00000423258.5:ENST00000647790.1:ENST00000647873.1:ENST00000649303.1:ENST00000647889.1:ENST00000648017.1:ENST00000496752.1:ENST00000650296.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	215	2	3.10966	3.92748	4.7453	4.76676e-4	3.46877e-6	0.0202392	0.00120947
chr16	31181897	31181997	6340570	0	+	0.4	(0.378,0.408]	chr16	608318	1	SS3_PROX	SS3_PROX:INTRON	FUS	ENSG00000089280.19	ENST00000566605.5:ENST00000254108.12:ENST00000380244.7:ENST00000487045.6:ENST00000487509.6:ENST00000568685.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	224	2	3.23534	3.927405	4.61947	5.26448e-5	1.37331e-7	0.00591845	1.76097e-4
chr7	73497697	73497797	3554851	0	-	0.35	(0.32,0.35]	chr7	330795	44	INTRON	INTRON	BAZ1B	ENSG00000009954.11	ENST00000339594.9:ENST00000404251.1	protein_coding	protein_coding	protein_coding	protein_coding	2	64	2	2.89475	3.92723	4.95971	0.00663522	0.00160352	0.0703181	0.0367961
chr6	147690902	147691002	2990905	0	+	0.44	(0.408,0.44]	chr6	280163	144	INTRON	INTRON	ENSG00000227681	ENSG00000227681.5	ENST00000427015.1:ENST00000432506.5:ENST00000442094.5	lncRNA	lncRNA	lncRNA	lncRNA	2	62	2	2.6117	3.927185	5.24267	0.00555224	4.83767e-4	0.0648867	0.0199261
chr10	68748445	68748540	4442545	0	+	0.305263	(0.28,0.32]	chr10	409630	5	INTRON	INTRON	CCAR1	ENSG00000060339.14	ENST00000630771.2:ENST00000543719.5:ENST00000541012.5:ENST00000265872.11:ENST00000539539.5:ENST00000543229.5:ENST00000536012.5:ENST00000543225.5:ENST00000540210.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	53	2	2.82769	3.927175	5.02666	0.0169391	0.0027935	0.103888	0.0488769
chr15	50669441	50669541	6173109	0	-	0.37	(0.35,0.378]	chr15	588397	60	INTRON	INTRON	TRPM7:ENSG00000288645	ENSG00000092439.16:ENSG00000288645.1	ENST00000646667.1:ENST00000560955.5:ENST00000676296.1	protein_coding	protein_coding	protein_coding	protein_coding	1	48	2	2.53856	3.92706	5.31556	0.0326077	4.97087e-4	0.133687	0.0201536
chr19	54448752	54448849	7211779	0	-	0.505155	(0.476,0.515]	chr19	732167	8	EXON_LNCRNA	EXON_LNCRNA	LENG8-AS1	ENSG00000226696.7	ENST00000429922.5:ENST00000686924.1:ENST00000693322.1:ENST00000448978.1	lncRNA	lncRNA	lncRNA	lncRNA	2	96	2	3.62464	3.9270249999999995	4.22941	5.079e-4	3.53814e-5	0.0202328	0.00502438
chr16	74297188	74297288	6389129	0	+	0.49	(0.476,0.515]	chr16	614386	2	SS5_PROX	SS5_PROX:INTRON	PSMD7	ENSG00000103035.11	ENST00000219313.9:ENST00000566015.1:ENST00000568717.1:ENST00000567958.5:ENST00000568615.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	94	2	3.74433	3.926945	4.10956	2.85053e-4	6.69931e-5	0.0150568	0.00721005
chr21	37394091	37394191	7406495	0	+	0.31	(0.28,0.32]	chr21	754850	186	INTRON	INTRON	DYRK1A	ENSG00000157540.22	ENST00000646523.1:ENST00000647425.1:ENST00000647188.2:ENST00000647504.1:ENST00000644942.1:ENST00000338785.8:ENST00000643624.1:ENST00000643551.1:ENST00000426672.6:ENST00000398960.7	protein_coding	protein_coding	protein_coding	protein_coding	3	80	2	2.50602	3.9268349999999996	5.34765	0.00290205	0.00287138	0.0494641	0.0474836
chr3	33705622	33705722	1653885	0	-	0.27	[0,0.28]	chr3	169693	83	INTRON	INTRON	CLASP2	ENSG00000163539.18	ENST00000399362.8:ENST00000682230.1:ENST00000468888.6:ENST00000359576.9:ENST00000467956.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	52	2	2.90797	3.9267900000000004	4.94561	0.0150263	0.0118539	0.0994339	0.0962115
chr16	89714987	89715086	6421616	0	+	0.373737	(0.35,0.378]	chr16	616541	18	INTRON	INTRON	VPS9D1-AS1	ENSG00000261373.1	ENST00000562866.1	lncRNA	lncRNA	lncRNA	lncRNA	2	69	2	2.82526	3.92679	5.02832	0.00269503	0.00156444	0.0466389	0.0365263
chr12	100270085	100270185	5200542	0	+	0.54	(0.515,0.57]	chr12	492117	19	INTRON	INTRON	SCYL2	ENSG00000136021.19	ENST00000549687.5:ENST00000360820.7:ENST00000548392.5:ENST00000635101.1:ENST00000550067.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	54	2	2.38476	3.926785	5.46881	0.0110593	9.03271e-5	0.0873897	0.00795396
chr7	128593717	128593817	3407986	0	+	0.56	(0.515,0.57]	chr7	318364	13	INTRON	INTRON	ENSG00000280828:ENSG00000242588	ENSG00000280828.1:ENSG00000242588.6	ENST00000479267.2:ENST00000605862.5	lncRNA	lncRNA	lncRNA:unprocessed_pseudogene	lncRNA:unprocessed_pseudogene	2	52	2	2.87626	3.9267399999999997	4.97722	0.00168681	0.00136224	0.0370386	0.0339121
chr1	54399162	54399262	463689	0	-	0.43	(0.408,0.44]	chr1	55784	425	INTRON	INTRON	SSBP3	ENSG00000157216.16	ENST00000610401.5:ENST00000357475.9:ENST00000371319.8:ENST00000417664.7:ENST00000533946.6:ENST00000371320.8:ENST00000525990.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	42	2	2.96007	3.92667	4.89327	0.00753901	0.00458906	0.0773151	0.0595107
chr19	2043982	2044082	7114657	0	-	0.41	(0.408,0.44]	chr19	715061	4	SS3_PROX	SS3_PROX:INTRON	MKNK2	ENSG00000099875.16	ENST00000309340.11:ENST00000250896.9:ENST00000586828.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	42	2	2.96007	3.92667	4.89327	0.00753901	0.00458906	0.0773151	0.0595107
chr2	171923379	171923476	918366	0	+	0.43299	(0.408,0.44]	chr2	101174	9	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:INTRON	HAT1	ENSG00000128708.13	ENST00000412731.5:ENST00000264108.5:ENST00000457761.6:ENST00000460481.1:ENST00000494601.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	42	2	2.96007	3.92667	4.89327	0.00753901	0.00458906	0.0773151	0.0595107
chr6	10723241	10723341	2810579	0	+	0.43	(0.408,0.44]	chr6	264430	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	TMEM14C	ENSG00000111843.14	ENST00000541412.5:ENST00000229563.6:ENST00000466421.5:ENST00000467415.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	42	2	2.96007	3.92667	4.89327	0.00753901	0.00458906	0.0773151	0.0595107
chr1	21155175	21155275	393413	0	-	0.53	(0.515,0.57]	chr1	46836	422	INTRON	INTRON	EIF4G3	ENSG00000075151.24	ENST00000374935.7:ENST00000602326.6:ENST00000685872.1:ENST00000686579.1:ENST00000688741.1:ENST00000400422.6:ENST00000634879.2:ENST00000693470.1:ENST00000685814.1:ENST00000356916.7:ENST00000682284.1:ENST00000438975.5:ENST00000411888.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	39	2	3.25412	3.9266300000000003	4.59914	0.00616166	0.00224554	0.0676501	0.0435144
chr14	20317793	20317883	5832996	0	-	0.522222	(0.515,0.57]	chr14	553934	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	CCNB1IP1	ENSG00000100814.18	ENST00000353689.8:ENST00000437553.6:ENST00000398160.6:ENST00000358932.9:ENST00000398169.7:ENST00000398163.6:ENST00000556854.5:ENST00000557665.5:ENST00000556563.5:ENST00000553291.5:ENST00000553516.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	39	2	3.25412	3.9266300000000003	4.59914	0.00616166	0.00224554	0.0676501	0.0435144
chr1	28564302	28564402	57664	0	+	0.26	[0,0.28]	chr1	7479	2	SS3_PROX	SS3_PROX:INTRON	TRNAU1AP	ENSG00000180098.9	ENST00000373830.4:ENST00000495995.5:ENST00000480930.5:ENST00000491577.5:ENST00000495215.5:ENST00000464093.1:ENST00000484775.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	52	2	2.69187	3.926585	5.1613	0.0221271	0.00866441	0.123903	0.0787025
chr18	777810	777910	6940360	0	-	0.18	[0,0.28]	chr18	686519	23	INTRON	INTRON	YES1	ENSG00000176105.14	ENST00000584307.5:ENST00000314574.5:ENST00000577611.1:ENST00000581960.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	52	2	2.69187	3.926585	5.1613	0.0221271	0.00866441	0.123903	0.0787025
chr20	35067603	35067702	7332652	0	-	0.373737	(0.35,0.378]	chr20	746961	97	INTRON	INTRON	TRPC4AP	ENSG00000100991.12	ENST00000252015.3:ENST00000451813.6	protein_coding	protein_coding	protein_coding	protein_coding	1	44	2	2.92952	3.926535	4.92355	0.00881187	0.00573514	0.084878	0.0657377
chr6	104987447	104987547	2930155	0	+	0.52	(0.515,0.57]	chr6	276110	288	INTRON	INTRON	LIN28B	ENSG00000187772.8	ENST00000635857.1:ENST00000637759.1:ENST00000345080.5	protein_coding	protein_coding	protein_coding	protein_coding	2	52	2	2.32836	3.926305	5.52425	0.0126662	1.68822e-4	0.0982897	0.0119215
chr22	49481295	49481395	7600892	0	-	0.44	(0.408,0.44]	chr22	778566	397	INTRON	INTRON	MIR3667HG	ENSG00000188511.13	ENST00000414287.5:ENST00000416411.1	lncRNA	lncRNA	lncRNA	lncRNA	3	125	2	3.45541	3.92621	4.39701	7.81911e-5	1.57324e-5	0.00736696	0.00318411
chr17	78219655	78219754	6682226	0	+	0.454545	(0.44,0.476]	chr17	652756	25	INTRON	INTRON	BIRC5	ENSG00000089685.15	ENST00000301633.8:ENST00000350051.8:ENST00000590925.6:ENST00000374948.6:ENST00000592734.5:ENST00000592115.5:ENST00000586192.5:ENST00000587746.5:ENST00000591800.1:ENST00000589892.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	56	2	2.54944	3.92617	5.3029	0.00591346	0.00102616	0.0694038	0.029231300000000002
chr2	108576187	108576287	846264	0	+	0.33	(0.32,0.35]	chr2	94665	50	INTRON	INTRON	LIMS1	ENSG00000169756.17	ENST00000695516.1:ENST00000544547.6:ENST00000695517.1:ENST00000695518.1	protein_coding	protein_coding	protein_coding	protein_coding	1	47	2	3.23331	3.9261	4.61889	0.0166646	0.00315414	0.102621	0.0515261
chrX	41341005	41341100	7645722	0	+	0.568421	(0.515,0.57]	chrX	782504	3	UTR5	UTR5:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DDX3X	ENSG00000215301.11	ENST00000625837.2:ENST00000626301.2:ENST00000629785.2:ENST00000630255.2:ENST00000630370.2:ENST00000630858.2:ENST00000629496.3:ENST00000610559.5:ENST00000611546.2:ENST00000478993.5:ENST00000457138.7:ENST00000644876.2:ENST00000399959.7:ENST00000644074.1:ENST00000645338.1:ENST00000646196.1:ENST00000642793.1:ENST00000646940.1:ENST00000644307.1:ENST00000645561.1:ENST00000645080.1:ENST00000642597.1:ENST00000642722.1:ENST00000644109.1:ENST00000644958.1:ENST00000646122.1:ENST00000644513.1:ENST00000645589.1:ENST00000441189.4:ENST00000646822.1:ENST00000631641.2:ENST00000615742.4:ENST00000647219.1:ENST00000646223.1:ENST00000643963.1:ENST00000646319.1:ENST00000645783.1:ENST00000642624.1:ENST00000542215.5:ENST00000644073.1:ENST00000644677.1:ENST00000615313.5:ENST00000642322.1:ENST00000622198.5:ENST00000645120.1:ENST00000646107.1:ENST00000646627.1:ENST00000645253.1:ENST00000642589.1:ENST00000645380.1:ENST00000646390.1:ENST00000642424.1:ENST00000642161.1:ENST00000645574.1:ENST00000646679.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	39	2	2.74772	3.9261	5.10448	0.0142192	0.0010345	0.103638	0.029231300000000002
chr19	52556940	52557038	7095557	0	+	0.428571	(0.408,0.44]	chr19	711373	5	INTRON	INTRON	ZNF808:ZNF701	ENSG00000198482.14:ENSG00000167562.14	ENST00000487863.5:ENST00000478039.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	3	69	2	1.9831	3.925945	5.86879	0.018491	1.0135e-4	0.116694	0.00906611
chr6	35903084	35903183	3088645	0	-	0.383838	(0.378,0.408]	chr6	288891	75	INTRON	INTRON	SRPK1	ENSG00000096063.16	ENST00000373825.7:ENST00000423325.6:ENST00000346162.10:ENST00000361690.7:ENST00000510290.5:ENST00000508473.5:ENST00000512445.5:ENST00000513367.1:ENST00000507909.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	58	2	2.29798	3.92593	5.55388	0.0147606	5.01023e-4	0.106702	0.0206993
chr9	19096373	19096473	4236538	0	-	0.5	(0.476,0.515]	chr9	389430	3	SS5_PROX	SS5_PROX:INTRON	HAUS6	ENSG00000147874.11	ENST00000380502.8	protein_coding	protein_coding	protein_coding	protein_coding	2	92	2	3.89433	3.925915	3.9575	1.98377e-4	9.49972e-5	0.0129156	0.00818267
chr13	52304572	52304672	5598626	0	-	0.53	(0.515,0.57]	chr13	535233	64	INTRON	INTRON	TPTE2P2	ENSG00000272281.6	ENST00000605924.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	1	42	2	3.25547	3.925885	4.5963	0.00370287	0.00261721	0.0561162	0.0455413
chr1	1532127	1532227	2070	0	+	0.37	(0.35,0.378]	chr1	525	24	INTRON	INTRON	ATAD3A	ENSG00000197785.14	ENST00000378756.8:ENST00000672388.1:ENST00000378755.9:ENST00000339113.9:ENST00000536055.6:ENST00000400830.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	59	2	2.59046	3.9258550000000003	5.26125	0.00528327	0.00191117	0.0656295	0.03947
chr16	24547454	24547553	6327734	0	+	0.494949	(0.476,0.515]	chr16	605830	8	INTRON	INTRON	RBBP6	ENSG00000122257.20	ENST00000564314.5:ENST00000567686.5:ENST00000568015.5:ENST00000319715.10:ENST00000452655.6:ENST00000381039.7:ENST00000646282.1:ENST00000348022.6	protein_coding	protein_coding	protein_coding	protein_coding	1	42	2	3.01197	3.925795	4.83962	0.00633162	0.00480934	0.0722266	0.0602209
chr20	63716949	63717049	7300394	0	+	0.5	(0.476,0.515]	chr20	743023	74	INTRON	INTRON	ZGPAT	ENSG00000197114.12	ENST00000448100.6:ENST00000355969.11:ENST00000477340.5:ENST00000357119.8:ENST00000369967.7:ENST00000328969.5:ENST00000472711.5:ENST00000478385.5:ENST00000468235.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	42	2	3.01197	3.925795	4.83962	0.00633162	0.00480934	0.0722266	0.0602209
chr9	128231485	128231585	4203344	0	+	0.38	(0.378,0.408]	chr9	384065	1	SS3_PROX	SS3_PROX:INTRON	DNM1	ENSG00000106976.21	ENST00000372923.8:ENST00000341179.11:ENST00000475805.5:ENST00000393594.7:ENST00000628346.2:ENST00000486160.3:ENST00000627543.2:ENST00000627061.2:ENST00000634267.2:ENST00000637999.1:ENST00000441149.6:ENST00000482638.6:ENST00000637317.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	130	2	3.39176	3.925745	4.45973	1.17224e-4	1.27812e-5	0.00929802	0.00283726
chr15	51125544	51125644	6025030	0	+	0.49	(0.476,0.515]	chr15	574193	875	INTRON	INTRON	MIR4713HG	ENSG00000259240.1	ENST00000559909.1	lncRNA	lncRNA	lncRNA	lncRNA	1	42	2	2.87879	3.9256599999999997	4.97253	0.00999149	0.00311573	0.0879541	0.0498063
chr8	140612686	140612786	4076337	0	-	0.48	(0.476,0.515]	chr8	370285	69	INTRON	INTRON	AGO2	ENSG00000123908.12	ENST00000220592.10:ENST00000519980.5:ENST00000523609.5:ENST00000517293.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	42	2	2.87879	3.9256599999999997	4.97253	0.00999149	0.00311573	0.0879541	0.0498063
chr17	16033278	16033377	6733349	0	-	0.393939	(0.378,0.408]	chr17	660482	4	INTRON	INTRON	NCOR1	ENSG00000141027.22	ENST00000268712.8:ENST00000395851.5:ENST00000470782.5:ENST00000464381.5:ENST00000580617.5:ENST00000395849.6:ENST00000582565.1:ENST00000579573.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	43	2	2.78705	3.925585	5.06412	0.0135539	0.0030522	0.101363	0.0493883
chr8	115539654	115539754	4030365	0	-	0.4	(0.378,0.408]	chr8	367954	240	INTRON	INTRON	TRPS1	ENSG00000104447.13	ENST00000395715.8:ENST00000640765.1:ENST00000220888.9:ENST00000519076.5:ENST00000520276.5:ENST00000519674.1	protein_coding	protein_coding	protein_coding	protein_coding	1	43	2	2.78705	3.925585	5.06412	0.0135539	0.0030522	0.101363	0.0493883
chr12	62593640	62593739	5152475	0	+	0.292929	(0.28,0.32]	chr12	487659	10	UTR3	UTR3:EXON_MRNA	MON2	ENSG00000061987.16	ENST00000641654.1:ENST00000393630.8	protein_coding	protein_coding	protein_coding	protein_coding	2	74	2	1.81582	3.925365	6.03491	0.068122	4.10265e-5	0.184298	0.00519615
chr17	30130332	30130432	6587525	0	+	0.45	(0.44,0.476]	chr17	640563	22	INTRON	INTRON	NSRP1	ENSG00000126653.18	ENST00000540900.7:ENST00000612959.4:ENST00000247026.10:ENST00000577289.6:ENST00000584154.5:ENST00000394826.8:ENST00000475652.5:ENST00000584317.5:ENST00000583301.5:ENST00000585881.5:ENST00000467446.6:ENST00000580103.6:ENST00000581048.5:ENST00000588614.1:ENST00000589608.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	56	2	2.59888	3.9253349999999996	5.25179	0.00487719	0.00124521	0.0640618	0.0322969
chr4	110187455	110187555	2227623	0	-	0.47	(0.44,0.476]	chr4	218024	815	INTRON	INTRON	ELOVL6	ENSG00000170522.10	ENST00000394607.7:ENST00000302274.8:ENST00000514184.5:ENST00000506625.5:ENST00000506461.1:ENST00000503885.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	56	2	2.59888	3.9253349999999996	5.25179	0.00487719	0.00124521	0.0640618	0.0322969
chr10	92540208	92540306	4665067	0	-	0.428571	(0.408,0.44]	chr10	429876	23	INTRON	INTRON	IDE	ENSG00000119912.18	ENST00000265986.11:ENST00000679312.1:ENST00000650060.1:ENST00000679089.1:ENST00000677569.1:ENST00000677096.1:ENST00000679222.1:ENST00000676540.1:ENST00000678026.1:ENST00000676626.1:ENST00000679069.1:ENST00000678977.1:ENST00000679232.1:ENST00000678844.1:ENST00000679174.1:ENST00000678673.1:ENST00000676816.1:ENST00000678715.1:ENST00000678458.1:ENST00000677079.1:ENST00000677434.1:ENST00000678248.1:ENST00000478361.6:ENST00000677978.1:ENST00000677196.1:ENST00000677953.1:ENST00000436178.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	42	2	3.02513	3.925215	4.8253	0.0059965	0.0056738	0.0700606	0.0653997
chr13	95158898	95158998	5638430	0	-	0.42	(0.408,0.44]	chr13	537060	101	INTRON	INTRON	ABCC4	ENSG00000125257.16	ENST00000645237.2:ENST00000643051.1:ENST00000643842.1:ENST00000646439.1:ENST00000643816.1:ENST00000536256.3:ENST00000643556.1:ENST00000629385.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	42	2	3.02513	3.925215	4.8253	0.0059965	0.0056738	0.0700606	0.0653997
chr4	25351638	25351689	1933756	0	+	0.431373	(0.408,0.44]	chr4	194144	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	ZCCHC4	ENSG00000168228.16	ENST00000302874.9:ENST00000505451.5:ENST00000507760.5:ENST00000505412.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	42	2	3.02513	3.925215	4.8253	0.0059965	0.0056738	0.0700606	0.0653997
chr1	1792647	1792744	361842	0	-	0.371134	(0.35,0.378]	chr1	42258	17	INTRON	INTRON	GNB1	ENSG00000078369.18	ENST00000610897.4:ENST00000615252.4:ENST00000378609.9:ENST00000461893.5:ENST00000471354.1:ENST00000439272.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	44	2	2.86451	3.92506	4.98561	0.0109111	0.00474226	0.0923273	0.0600445
chr7	119769820	119769920	3629037	0	-	0.3	(0.28,0.32]	chr7	337323	173	INTRON	INTRON	LINC02476	ENSG00000225546.6	ENST00000660268.1:ENST00000431071.5:ENST00000426413.2	lncRNA	lncRNA	lncRNA	lncRNA	4	90	2	2.17818	3.924875	5.67157	0.00555379	9.48957e-4	0.0675078	0.0281755
chr1	226185989	226186089	647051	0	-	0.37	(0.35,0.378]	chr1	76668	2	SS5_PROX	SS5_PROX:INTRON	ACBD3	ENSG00000182827.9	ENST00000366812.6	protein_coding	protein_coding	protein_coding	protein_coding	5	183	2	3.29826	3.92461	4.55096	1.16858e-5	9.32543e-6	0.00252017	0.00235825
chr17	46554855	46554955	6786482	0	-	0.58	(0.57,1]	chr17	669357	22	UTR3	UTR3:EXON_MRNA:INTRON	ARL17A	ENSG00000185829.18	ENST00000445552.6:ENST00000622488.6:ENST00000329240.10:ENST00000573185.5:ENST00000570550.5:ENST00000336125.6	protein_coding	protein_coding	protein_coding	protein_coding	4	50	2	2.22366	3.9242850000000002	5.62491	0.00344378	6.73465e-6	0.0539802	0.00194394
chr4	1854573	1854673	2095753	0	-	0.49	(0.476,0.515]	chr4	207344	50	INTRON	INTRON	LETM1	ENSG00000168924.15	ENST00000302787.3:ENST00000466175.5:ENST00000512189.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	49	2	3.41728	3.924105	4.43093	0.00931369	0.00165726	0.0855292	0.0369207
chr12	91505210	91505310	5384268	0	-	0.35	(0.32,0.35]	chr12	513479	1055	INTRON	INTRON	ENSG00000289605	ENSG00000289605.1	ENST00000685093.1	lncRNA	lncRNA	lncRNA	lncRNA	1	50	2	2.51061	3.9240299999999997	5.33745	0.0364463	6.1485e-4	0.138959	0.0223951
chr1	149985369	149985469	550150	0	-	0.51	(0.476,0.515]	chr1	64628	74	INTRON	INTRON	OTUD7B	ENSG00000264522.6	ENST00000581312.6:ENST00000417191.2	protein_coding	protein_coding	protein_coding	protein_coding	0	20	2	3.83018	3.9239749999999995	4.01777	0.0423385	0.0411361	0.161744	0.1451
chr1	229271969	229272068	333278	0	+	0.50505	(0.476,0.515]	chr1	38810	2	INTRON	INTRON	RAB4A	ENSG00000168118.12	ENST00000618010.4:ENST00000481981.1:ENST00000366690.5:ENST00000473894.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	20	2	3.83018	3.9239749999999995	4.01777	0.0423385	0.0411361	0.161744	0.1451
chr1	236893867	236893965	343513	0	+	0.5	(0.476,0.515]	chr1	39980	27	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	MTR	ENSG00000116984.15	ENST00000680454.1:ENST00000366577.10:ENST00000674797.2:ENST00000679569.1:ENST00000650888.1:ENST00000535889.6:ENST00000651455.1:ENST00000681102.1:ENST00000679842.1:ENST00000681177.1:ENST00000681937.1:ENST00000366576.3:ENST00000470570.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	20	2	3.83018	3.9239749999999995	4.01777	0.0423385	0.0411361	0.161744	0.1451
chr10	18610126	18610226	4570298	0	-	0.48	(0.476,0.515]	chr10	421506	2	SS3_PROX	SS3_PROX:INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	20	2	3.83018	3.9239749999999995	4.01777	0.0423385	0.0411361	0.161744	0.1451
chr10	25468207	25468306	4411153	0	+	0.484848	(0.476,0.515]	chr10	406856	11	INTRON	INTRON	GPR158	ENSG00000151025.11	ENST00000650135.1:ENST00000376351.4:ENST00000482641.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	20	2	3.83018	3.9239749999999995	4.01777	0.0423385	0.0411361	0.161744	0.1451
chr10	119043753	119043853	4704531	0	-	0.5	(0.476,0.515]	chr10	433928	3	SS5_PROX	SS5_PROX:INTRON	EIF3A	ENSG00000107581.13	ENST00000369144.8:ENST00000541549.2	protein_coding	protein_coding	protein_coding	protein_coding	0	20	2	3.83018	3.9239749999999995	4.01777	0.0423385	0.0411361	0.161744	0.1451
chr11	20437549	20437649	4751425	0	+	0.5	(0.476,0.515]	chr11	440021	103	INTRON	INTRON	PRMT3	ENSG00000185238.13	ENST00000330796.9:ENST00000331079.11:ENST00000437750.2:ENST00000529592.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	20	2	3.83018	3.9239749999999995	4.01777	0.0423385	0.0411361	0.161744	0.1451
chr12	47777471	47777569	5130412	0	+	0.510204	(0.476,0.515]	chr12	483569	37	INTRON	INTRON	SLC48A1	ENSG00000211584.14	ENST00000548498.5:ENST00000547002.5:ENST00000549243.5:ENST00000442892.2:ENST00000551301.1:ENST00000442218.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	20	2	3.83018	3.9239749999999995	4.01777	0.0423385	0.0411361	0.161744	0.1451
chr12	49502697	49502797	5134317	0	+	0.5	(0.476,0.515]	chr12	484045	21	INTRON	INTRON	SPATS2	ENSG00000123352.18	ENST00000549412.5:ENST00000552918.6:ENST00000553127.5:ENST00000321898.10:ENST00000552557.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	20	2	3.83018	3.9239749999999995	4.01777	0.0423385	0.0411361	0.161744	0.1451
chr12	115967355	115967453	5422409	0	-	0.489796	(0.476,0.515]	chr12	518140	3	INTRON	INTRON	MED13L	ENSG00000123066.9	ENST00000281928.9:ENST00000648379.1:ENST00000650226.1:ENST00000649607.1:ENST00000648737.1:ENST00000649775.1:ENST00000648825.1:ENST00000548784.2:ENST00000648916.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	20	2	3.83018	3.9239749999999995	4.01777	0.0423385	0.0411361	0.161744	0.1451
chr15	75373200	75373298	6223262	0	-	0.5	(0.476,0.515]	chr15	594401	6	INTRON	INTRON	SIN3A	ENSG00000169375.16	ENST00000394947.8:ENST00000360439.8:ENST00000394949.8:ENST00000566640.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	20	2	3.83018	3.9239749999999995	4.01777	0.0423385	0.0411361	0.161744	0.1451
chr16	53994842	53994942	6357097	0	+	0.51	(0.476,0.515]	chr16	610178	95	INTRON	INTRON	FTO	ENSG00000140718.21	ENST00000636491.1:ENST00000471389.6:ENST00000636992.1:ENST00000637969.1:ENST00000637845.1:ENST00000637562.1:ENST00000464071.1:ENST00000563011.2:ENST00000612285.2:ENST00000431610.6:ENST00000460382.5:ENST00000463855.1:ENST00000635892.1:ENST00000268349.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	20	2	3.83018	3.9239749999999995	4.01777	0.0423385	0.0411361	0.161744	0.1451
chr16	74327072	74327172	6523119	0	-	0.48	(0.476,0.515]	chr16	631552	138	INTRON	INTRON	ENSG00000259972	ENSG00000259972.3	ENST00000565313.1:ENST00000561921.1	lncRNA	lncRNA	lncRNA	lncRNA	0	20	2	3.83018	3.9239749999999995	4.01777	0.0423385	0.0411361	0.161744	0.1451
chr16	90195822	90195922	6424851	0	+	0.48	(0.476,0.515]	chr16	617268	12	INTRON	INTRON	LINC02193	ENSG00000260923.7	ENST00000568418.1:ENST00000656587.1:ENST00000668099.1:ENST00000569162.2:ENST00000665776.1:ENST00000669853.1:ENST00000668039.1:ENST00000658135.1:ENST00000663101.1:ENST00000663757.1:ENST00000568947.2	lncRNA	lncRNA	lncRNA	lncRNA	0	20	2	3.83018	3.9239749999999995	4.01777	0.0423385	0.0411361	0.161744	0.1451
chr17	17225506	17225602	6735950	0	-	0.479167	(0.476,0.515]	chr17	660909	11	EXON_MRNA	EXON_MRNA:INTRON	FLCN	ENSG00000154803.13	ENST00000285071.9:ENST00000389169.9:ENST00000417064.1:ENST00000389171.4:ENST00000389168.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	20	2	3.83018	3.9239749999999995	4.01777	0.0423385	0.0411361	0.161744	0.1451
chr17	18927868	18927968	6570458	0	+	0.48	(0.476,0.515]	chr17	638889	35	INTRON	INTRON	PRPSAP2	ENSG00000141127.15	ENST00000610773.4:ENST00000492129.5:ENST00000419071.6:ENST00000536323.5:ENST00000268835.7:ENST00000395656.6:ENST00000542013.5:ENST00000574451.5:ENST00000460724.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	20	2	3.83018	3.9239749999999995	4.01777	0.0423385	0.0411361	0.161744	0.1451
chr17	29868525	29868625	6750560	0	-	0.5	(0.476,0.515]	chr17	663447	192	INTRON	INTRON	SSH2	ENSG00000141298.19	ENST00000540801.6:ENST00000269033.7:ENST00000394848.5:ENST00000579040.5:ENST00000577483.1:ENST00000578411.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	20	2	3.83018	3.9239749999999995	4.01777	0.0423385	0.0411361	0.161744	0.1451
chr17	45488857	45488956	6783192	0	-	0.515152	(0.476,0.515]	chr17	669139	11	INTRON	INTRON	PLEKHM1	ENSG00000225190.11	ENST00000430334.8:ENST00000579197.5:ENST00000581448.5:ENST00000584420.1:ENST00000589780.5:ENST00000586562.5:ENST00000586084.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	20	2	3.83018	3.9239749999999995	4.01777	0.0423385	0.0411361	0.161744	0.1451
chr19	2172438	2172538	6996254	0	+	0.49	(0.476,0.515]	chr19	693417	78	INTRON	INTRON	DOT1L	ENSG00000104885.19	ENST00000398665.8:ENST00000686010.1:ENST00000452696.5:ENST00000478937.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	20	2	3.83018	3.9239749999999995	4.01777	0.0423385	0.0411361	0.161744	0.1451
chr19	11672020	11672119	7018571	0	+	0.494949	(0.476,0.515]	chr19	697745	193	INTRON	INTRON	ENSG00000197332	ENSG00000197332.9	ENST00000666937.1:ENST00000344893.4	lncRNA	lncRNA	lncRNA	lncRNA	0	20	2	3.83018	3.9239749999999995	4.01777	0.0423385	0.0411361	0.161744	0.1451
chr19	23793848	23793947	7042744	0	+	0.484848	(0.476,0.515]	chr19	702227	65	INTRON	INTRON	RPSAP58	ENSG00000288920.1	ENST00000471224.5:ENST00000692590.1:ENST00000475499.2:ENST00000686829.1:ENST00000689525.1:ENST00000691397.1:ENST00000688405.1:ENST00000687994.1:ENST00000484897.4:ENST00000685490.1:ENST00000462186.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	20	2	3.83018	3.9239749999999995	4.01777	0.0423385	0.0411361	0.161744	0.1451
chr19	45416490	45416572	7190944	0	-	0.487805	(0.476,0.515]	chr19	728107	1	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	ERCC1	ENSG00000012061.16	ENST00000423698.6:ENST00000300853.8:ENST00000340192.11:ENST00000590701.5:ENST00000591636.5:ENST00000589165.5:ENST00000013807.9:ENST00000592444.5:ENST00000589381.5:ENST00000587888.5:ENST00000592083.5:ENST00000592905.5:ENST00000592023.5:ENST00000588300.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	20	2	3.83018	3.9239749999999995	4.01777	0.0423385	0.0411361	0.161744	0.1451
chr2	58210698	58210795	1126441	0	-	0.484536	(0.476,0.515]	chr2	120933	9	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:INTRON	FANCL	ENSG00000115392.13	ENST00000696400.1:ENST00000403295.8:ENST00000696492.1:ENST00000427708.7:ENST00000696314.1:ENST00000696315.1:ENST00000696454.1:ENST00000696508.1:ENST00000696548.1:ENST00000696542.1:ENST00000696432.1:ENST00000696319.1:ENST00000403676.6:ENST00000696433.1:ENST00000696434.1:ENST00000696499.1:ENST00000696564.1:ENST00000402135.8:ENST00000696546.1:ENST00000233741.9:ENST00000696316.1:ENST00000696378.1:ENST00000696435.1:ENST00000696493.1:ENST00000696543.1:ENST00000696544.1:ENST00000696545.1:ENST00000696565.1:ENST00000696620.1:ENST00000696621.1:ENST00000696635.1:ENST00000696364.1:ENST00000696634.1:ENST00000696317.1:ENST00000696622.1:ENST00000696467.1:ENST00000696547.1:ENST00000449070.6:ENST00000696305.1:ENST00000417361.2:ENST00000696338.1:ENST00000696361.1:ENST00000696318.1:ENST00000696371.1:ENST00000696409.1:ENST00000696410.1:ENST00000696455.1:ENST00000696468.1:ENST00000696527.1:ENST00000696567.1:ENST00000696324.1:ENST00000696566.1:ENST00000696623.1:ENST00000446381.6:ENST00000696469.1:ENST00000696624.1:ENST00000696411.1:ENST00000470506.2:ENST00000696358.1:ENST00000696373.1:ENST00000696394.1:ENST00000696320.1:ENST00000696395.1:ENST00000696341.1:ENST00000696340.1:ENST00000696374.1:ENST00000696396.1:ENST00000696342.1:ENST00000696325.1:ENST00000696399.1:ENST00000696398.1:ENST00000696306.1:ENST00000696397.1:ENST00000696360.1:ENST00000696344.1:ENST00000696343.1:ENST00000696362.1:ENST00000696528.1:ENST00000696497.1:ENST00000696326.1:ENST00000696625.1:ENST00000696510.1:ENST00000696438.1:ENST00000696496.1:ENST00000696509.1:ENST00000696569.1:ENST00000696457.1:ENST00000696458.1:ENST00000696473.1:ENST00000696495.1:ENST00000696415.1:ENST00000696472.1:ENST00000696459.1:ENST00000696498.1:ENST00000696416.1:ENST00000696530.1:ENST00000696460.1:ENST00000696570.1:ENST00000696531.1:ENST00000696307.1:ENST00000696345.1:ENST00000696377.1:ENST00000696417.1:ENST00000696594.1:ENST00000696595.1:ENST00000696379.1:ENST00000696346.1:ENST00000696380.1:ENST00000696347.1:ENST00000696461.1:ENST00000696596.1:ENST00000696549.1:ENST00000696597.1:ENST00000696550.1:ENST00000696598.1:ENST00000696321.1:ENST00000696476.1:ENST00000696477.1:ENST00000696511.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	20	2	3.83018	3.9239749999999995	4.01777	0.0423385	0.0411361	0.161744	0.1451
chr2	232750968	232751067	1037787	0	+	0.484848	(0.476,0.515]	chr2	110668	15	INTRON	INTRON	GIGYF2	ENSG00000204120.16	ENST00000629305.2:ENST00000428883.5:ENST00000409480.5:ENST00000456491.5:ENST00000373563.9:ENST00000409547.5:ENST00000430720.5:ENST00000425040.5:ENST00000421433.5:ENST00000423659.5:ENST00000409196.7:ENST00000409451.7:ENST00000463554.5:ENST00000440945.5:ENST00000429187.5:ENST00000424038.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	20	2	3.83018	3.9239749999999995	4.01777	0.0423385	0.0411361	0.161744	0.1451
chr20	34051583	34051683	7258518	0	+	0.48	(0.476,0.515]	chr20	737334	180	INTRON	INTRON	RALY	ENSG00000125970.12	ENST00000375114.7:ENST00000448364.5:ENST00000413297.5:ENST00000246194.8:ENST00000333552.9:ENST00000442805.1	protein_coding	protein_coding	protein_coding	protein_coding	0	20	2	3.83018	3.9239749999999995	4.01777	0.0423385	0.0411361	0.161744	0.1451
chr22	24550292	24550391	7563636	0	-	0.50505	(0.476,0.515]	chr22	773803	9	INTRON	INTRON	GUCD1	ENSG00000138867.17	ENST00000621833.4:ENST00000407471.7:ENST00000435822.6:ENST00000398245.8:ENST00000404664.7:ENST00000447813.6:ENST00000402766.5:ENST00000407973.2:ENST00000468170.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	20	2	3.83018	3.9239749999999995	4.01777	0.0423385	0.0411361	0.161744	0.1451
chr22	46293258	46293352	7533464	0	+	0.5	(0.476,0.515]	chr22	770285	5	UTR3	UTR3:EXON_MRNA	TTC38	ENSG00000075234.17	ENST00000381031.8	protein_coding	protein_coding	protein_coding	protein_coding	0	20	2	3.83018	3.9239749999999995	4.01777	0.0423385	0.0411361	0.161744	0.1451
chr3	53088579	53088677	1703662	0	-	0.5	(0.476,0.515]	chr3	175458	2	UTR3	UTR3:EXON_MRNA	RFT1	ENSG00000163933.10	ENST00000296292.8	protein_coding	protein_coding	protein_coding	protein_coding	0	20	2	3.83018	3.9239749999999995	4.01777	0.0423385	0.0411361	0.161744	0.1451
chr3	134494204	134494302	1510183	0	+	0.479592	(0.476,0.515]	chr3	157955	58	INTRON	INTRON	CEP63	ENSG00000182923.20	ENST00000683997.1:ENST00000683596.1:ENST00000684574.1:ENST00000650279.2:ENST00000683940.1:ENST00000332047.10:ENST00000684217.1:ENST00000684256.1:ENST00000354446.7:ENST00000683556.1:ENST00000684588.1:ENST00000682593.1:ENST00000682858.1:ENST00000683949.1:ENST00000684170.1:ENST00000682458.1:ENST00000682190.1:ENST00000682042.1:ENST00000683118.1:ENST00000511574.6:ENST00000682822.1:ENST00000620544.5:ENST00000383229.8:ENST00000675561.1:ENST00000683245.1:ENST00000513295.2:ENST00000508778.2:ENST00000684481.1:ENST00000514678.2:ENST00000682717.1:ENST00000683190.1:ENST00000682689.1:ENST00000684677.1:ENST00000682316.1:ENST00000683177.1:ENST00000683861.1:ENST00000512894.6:ENST00000682013.1:ENST00000682007.1:ENST00000682402.1:ENST00000682954.1:ENST00000684777.1:ENST00000682670.1:ENST00000682937.1:ENST00000504013.6:ENST00000682072.1:ENST00000683931.1:ENST00000683732.1:ENST00000684060.1:ENST00000513612.7:ENST00000606977.5:ENST00000683608.1:ENST00000682685.1:ENST00000684492.1:ENST00000682800.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	20	2	3.83018	3.9239749999999995	4.01777	0.0423385	0.0411361	0.161744	0.1451
chr3	182847193	182847291	1578421	0	+	0.510204	(0.476,0.515]	chr3	162745	13	INTRON	INTRON	ATP11B	ENSG00000058063.16	ENST00000323116.10:ENST00000482794.1:ENST00000498086.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	20	2	3.83018	3.9239749999999995	4.01777	0.0423385	0.0411361	0.161744	0.1451
chr3	186971876	186971975	1586590	0	+	0.50505	(0.476,0.515]	chr3	164332	76	INTRON	INTRON	ST6GAL1	ENSG00000073849.16	ENST00000676786.1:ENST00000169298.8:ENST00000457772.6:ENST00000455441.5:ENST00000427315.5:ENST00000677292.1:ENST00000458216.5:ENST00000430309.5:ENST00000417392.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	20	2	3.83018	3.9239749999999995	4.01777	0.0423385	0.0411361	0.161744	0.1451
chr4	25352640	25352739	1933767	0	+	0.515152	(0.476,0.515]	chr4	194149	2	INTRON	INTRON	ZCCHC4	ENSG00000168228.16	ENST00000302874.9:ENST00000507760.5:ENST00000505412.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	20	2	3.83018	3.9239749999999995	4.01777	0.0423385	0.0411361	0.161744	0.1451
chr5	37360427	37360525	2602660	0	-	0.510204	(0.476,0.515]	chr5	247515	19	INTRON	INTRON	NUP155	ENSG00000113569.16	ENST00000231498.8:ENST00000381843.6:ENST00000513532.1	protein_coding	protein_coding	protein_coding	protein_coding	0	20	2	3.83018	3.9239749999999995	4.01777	0.0423385	0.0411361	0.161744	0.1451
chr5	160032711	160032811	2528934	0	+	0.51	(0.476,0.515]	chr5	241963	133	INTRON	INTRON	TTC1	ENSG00000113312.12	ENST00000682719.1:ENST00000522793.5:ENST00000682151.1:ENST00000684137.1:ENST00000682220.1:ENST00000684018.1:ENST00000683219.1:ENST00000682172.1:ENST00000231238.10:ENST00000682131.1:ENST00000684515.1:ENST00000683631.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	20	2	3.83018	3.9239749999999995	4.01777	0.0423385	0.0411361	0.161744	0.1451
chr6	107028697	107028797	2931526	0	+	0.51	(0.476,0.515]	chr6	276184	6	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	MTRES1	ENSG00000130349.10	ENST00000311381.8:ENST00000405204.6:ENST00000625458.1	protein_coding	protein_coding	protein_coding	protein_coding	0	20	2	3.83018	3.9239749999999995	4.01777	0.0423385	0.0411361	0.161744	0.1451
chr7	1051781	1051881	3460976	0	-	0.48	(0.476,0.515]	chr7	323579	236	INTRON	INTRON	C7orf50	ENSG00000146540.15	ENST00000357429.10:ENST00000397100.6:ENST00000397098.8:ENST00000488073.1:ENST00000444428.5:ENST00000491163.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	20	2	3.83018	3.9239749999999995	4.01777	0.0423385	0.0411361	0.161744	0.1451
chr7	75479445	75479544	3558864	0	-	0.494949	(0.476,0.515]	chr7	331555	39	INTRON	INTRON	POM121C:ENSG00000242073	ENSG00000272391.6:ENSG00000242073.2	ENST00000615331.5:ENST00000398379.2:ENST00000415277.2	protein_coding	protein_coding	protein_coding:transcribed_unprocessed_pseudogene	protein_coding:transcribed_unprocessed_pseudogene	0	20	2	3.83018	3.9239749999999995	4.01777	0.0423385	0.0411361	0.161744	0.1451
chr7	75690679	75690779	3560768	0	-	0.49	(0.476,0.515]	chr7	331784	356	INTRON	INTRON	HIP1	ENSG00000127946.17	ENST00000336926.11:ENST00000434438.6:ENST00000485723.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	20	2	3.83018	3.9239749999999995	4.01777	0.0423385	0.0411361	0.161744	0.1451
chr7	90378711	90378809	3347587	0	+	0.489796	(0.476,0.515]	chr7	312016	1	INTRON	INTRON	GTPBP10	ENSG00000105793.16	ENST00000257659.12:ENST00000417207.5:ENST00000380058.7:ENST00000222511.11:ENST00000474503.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	20	2	3.83018	3.9239749999999995	4.01777	0.0423385	0.0411361	0.161744	0.1451
chr8	139964148	139964248	4070384	0	-	0.5	(0.476,0.515]	chr8	370026	535	INTRON	INTRON	TRAPPC9	ENSG00000167632.18	ENST00000648948.2:ENST00000438773.4:ENST00000520857.5:ENST00000521667.5:ENST00000524162.5:ENST00000523777.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	20	2	3.83018	3.9239749999999995	4.01777	0.0423385	0.0411361	0.161744	0.1451
chr9	135835766	135835866	4371541	0	-	0.5	(0.476,0.515]	chr9	402449	78	INTRON	INTRON	CAMSAP1	ENSG00000130559.19	ENST00000389532.9:ENST00000312405.10:ENST00000409386.3	protein_coding	protein_coding	protein_coding	protein_coding	0	20	2	3.83018	3.9239749999999995	4.01777	0.0423385	0.0411361	0.161744	0.1451
chrX	101057808	101057908	7855343	0	-	0.5	(0.476,0.515]	chrX	800841	58	INTRON	INTRON	TRMT2B-AS1	ENSG00000225839.2	ENST00000443801.2	lncRNA	lncRNA	lncRNA	lncRNA	0	20	2	3.83018	3.9239749999999995	4.01777	0.0423385	0.0411361	0.161744	0.1451
chrX	47172240	47172337	7655350	0	+	0.505155	(0.476,0.515]	chrX	783097	6	INTRON	INTRON	RBM10	ENSG00000182872.16	ENST00000377604.8:ENST00000345781.10:ENST00000628161.2:ENST00000329236.8	protein_coding	protein_coding	protein_coding	protein_coding	3	68	2	2.48789	3.9239200000000003	5.35995	0.00256502	7.54256e-4	0.0466761	0.0251179
chr3	88107631	88107730	1457512	0	+	0.323232	(0.32,0.35]	chr3	153170	209	INTRON	INTRON	ZNF654	ENSG00000175105.8	ENST00000636215.2:ENST00000473136.4:ENST00000623596.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	68	2	2.04237	3.92388	5.80539	0.0375542	7.5134e-5	0.140222	0.00725287
chr10	12150061	12150161	4394146	0	+	0.31	(0.28,0.32]	chr10	405370	1	SS5_PROX	SS5_PROX:INTRON	SEC61A2	ENSG00000065665.21	ENST00000379051.5:ENST00000379033.7:ENST00000441368.5:ENST00000298428.14:ENST00000475268.5:ENST00000495368.1:ENST00000304267.12:ENST00000472221.5:ENST00000379020.8:ENST00000379017.7:ENST00000418772.1:ENST00000419021.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	48	2	2.91832	3.9238049999999998	4.92929	0.0102484	0.0098607	0.089002	0.0838128
chr12	48696162	48696262	5319359	0	-	0.32	(0.28,0.32]	chr12	506395	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	CCNT1	ENSG00000129315.11	ENST00000618666.4:ENST00000261900.8:ENST00000417344.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	48	2	2.80157	3.92368	5.04579	0.0147132	0.00714672	0.106558	0.0723634
chr15	57988316	57988416	6186752	0	-	0.32	(0.28,0.32]	chr15	589736	221	INTRON	INTRON	ALDH1A2	ENSG00000128918.15	ENST00000537372.5:ENST00000249750.9:ENST00000347587.7:ENST00000430119.6:ENST00000558231.5:ENST00000559517.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	48	2	2.80157	3.92368	5.04579	0.0147132	0.00714672	0.106558	0.0723634
chr2	27399127	27399227	1087196	0	-	0.34	(0.32,0.35]	chr2	116461	116	INTRON	INTRON	PPM1G	ENSG00000115241.11	ENST00000472077.1:ENST00000344034.5:ENST00000484925.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	50	2	2.84812	3.9236700000000004	4.99922	0.0147575	0.00223907	0.0983813	0.0435144
chr12	64618244	64618344	5155075	0	+	0.27	[0,0.28]	chr12	488093	67	INTRON	INTRON	RASSF3	ENSG00000153179.13	ENST00000637125.1:ENST00000542104.6:ENST00000283172.8:ENST00000336061.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	57	2	2.54624	3.92367	5.3011	0.0388449	0.00185843	0.143072	0.039946
chr18	12881371	12881468	6950718	0	-	0.494845	(0.476,0.515]	chr18	687631	8	INTRON	INTRON	PTPN2	ENSG00000175354.20	ENST00000327283.7:ENST00000591115.5:ENST00000353319.8:ENST00000309660.10:ENST00000646492.1:ENST00000645191.1:ENST00000645816.1:ENST00000591305.5:ENST00000592776.1:ENST00000589216.1:ENST00000592059.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	56	2	2.53671	3.9236449999999996	5.31058	0.00624027	9.15544e-4	0.0718843	0.0278396
chr4	77811376	77811476	2166956	0	-	0.44	(0.408,0.44]	chr4	213719	346	INTRON	INTRON	CNOT6L	ENSG00000138767.14	ENST00000504123.7:ENST00000649644.1:ENST00000515506.6:ENST00000512485.6:ENST00000504804.7:ENST00000506166.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	56	2	2.55103	3.923575	5.29612	0.00587353	0.00113523	0.0690758	0.0307488
chr14	21471415	21471513	5836436	0	-	0.459184	(0.44,0.476]	chr14	554804	23	INTRON	INTRON	RAB2B	ENSG00000129472.15	ENST00000397762.6:ENST00000649801.1:ENST00000417141.5:ENST00000461909.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	42	2	3.08591	3.923295	4.76068	0.00653414	0.00481262	0.0699952	0.0638089
chr20	38423092	38423187	7342181	0	-	0.463158	(0.44,0.476]	chr20	748300	10	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	SNHG17	ENSG00000196756.14	ENST00000654008.2:ENST00000658076.1:ENST00000662982.2:ENST00000456953.7:ENST00000654183.2:ENST00000663540.2:ENST00000651115.2:ENST00000667835.1:ENST00000660885.2:ENST00000662213.1:ENST00000665233.2:ENST00000666268.2:ENST00000665735.1:ENST00000660558.2:ENST00000691280.1:ENST00000658488.2:ENST00000688336.1:ENST00000668054.2:ENST00000690441.1:ENST00000655520.2:ENST00000687490.1:ENST00000664626.1:ENST00000658051.1:ENST00000668042.1:ENST00000686971.1:ENST00000663187.1:ENST00000669114.1:ENST00000653343.1:ENST00000666225.1:ENST00000659186.1:ENST00000671309.1:ENST00000669405.1:ENST00000666806.1:ENST00000657665.1:ENST00000657868.1:ENST00000663534.1:ENST00000658141.1:ENST00000689917.1:ENST00000664073.2:ENST00000653697.1:ENST00000656320.1:ENST00000686814.1:ENST00000417578.7:ENST00000654853.1:ENST00000665440.1:ENST00000659102.1:ENST00000436764.7:ENST00000668482.2:ENST00000671249.1:ENST00000655692.1:ENST00000662568.1:ENST00000659255.1:ENST00000665693.1:ENST00000693250.1:ENST00000691368.1:ENST00000693227.1:ENST00000690361.1:ENST00000670051.1:ENST00000667912.1:ENST00000693665.1:ENST00000665181.1:ENST00000687532.1:ENST00000691386.1:ENST00000693684.1:ENST00000666331.1:ENST00000669480.1:ENST00000658905.1:ENST00000661252.1:ENST00000669137.1:ENST00000688133.1:ENST00000689414.1:ENST00000691314.1:ENST00000669033.1:ENST00000686145.1:ENST00000653938.1:ENST00000663784.1:ENST00000665003.1:ENST00000659400.1:ENST00000653753.1:ENST00000449469.5:ENST00000654389.1:ENST00000657429.1:ENST00000667412.1:ENST00000654092.1:ENST00000653277.1:ENST00000663955.1:ENST00000656023.1:ENST00000692262.1:ENST00000414142.5:ENST00000659753.1:ENST00000670958.1:ENST00000657216.2:ENST00000664636.1:ENST00000657843.1:ENST00000660189.1:ENST00000660064.1:ENST00000655198.1:ENST00000662572.1:ENST00000423536.6:ENST00000658455.1:ENST00000666419.1:ENST00000413755.5	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	1	42	2	3.08591	3.923295	4.76068	0.00653414	0.00481262	0.0699952	0.0638089
chr21	34079622	34079722	7401153	0	+	0.47	(0.44,0.476]	chr21	753967	55	INTRON	INTRON	MRPS6:SLC5A3	ENSG00000243927.6:ENSG00000198743.7	ENST00000488492.5:ENST00000477091.5:ENST00000399312.3:ENST00000381151.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	42	2	3.08591	3.923295	4.76068	0.00653414	0.00481262	0.0699952	0.0638089
chr6	149750365	149750465	2996040	0	+	0.55	(0.515,0.57]	chr6	280341	1	SS5_PROX	SS5_PROX:INTRON	PCMT1	ENSG00000120265.19	ENST00000367384.7:ENST00000367378.6:ENST00000484601.6:ENST00000367380.9:ENST00000544496.5:ENST00000649295.1:ENST00000494411.6:ENST00000460828.6:ENST00000464889.7:ENST00000486585.2:ENST00000495487.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	106	2	3.6905	3.92326	4.15602	3.43075e-5	1.45191e-5	0.00494726	0.0028542
chr7	152655528	152655627	3681413	0	-	0.474747	(0.44,0.476]	chr7	341677	58	INTRON	INTRON	XRCC2	ENSG00000196584.3	ENST00000359321.2:ENST00000495707.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	42	2	2.81896	3.9229950000000002	5.02703	0.0120766	0.00278015	0.0962311	0.0469265
chr6	131650847	131650947	2960320	0	+	0.28	[0,0.28]	chr6	278282	3	INTRON	INTRON	ENPP3	ENSG00000154269.15	ENST00000427707.5:ENST00000414305.5:ENST00000357639.8:ENST00000358229.6:ENST00000423831.5:ENST00000470930.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	95	2	1.66484	3.9229	6.18096	0.0617844	4.96998e-5	0.174281	0.00577648
chr4	136490	136589	1905765	0	+	0.484848	(0.476,0.515]	chr4	191032	46	INTRON	INTRON	ZNF718	ENSG00000250312.8	ENST00000642529.1:ENST00000510175.6:ENST00000609714.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	60	2	2.21677	3.9228500000000004	5.62893	0.0207026	8.45697e-5	0.110999	0.00776967
chr5	37360624	37360723	2602662	0	-	0.50505	(0.476,0.515]	chr5	247515	21	INTRON	INTRON	NUP155	ENSG00000113569.16	ENST00000231498.8:ENST00000381843.6:ENST00000513532.1	protein_coding	protein_coding	protein_coding	protein_coding	2	56	2	2.58615	3.9228	5.25945	0.00515536	0.00111445	0.0650394	0.0306328
chr2	200858489	200858589	1310050	0	-	0.47	(0.44,0.476]	chr2	137035	4	SS3_PROX	SS3_PROX:INTRON	CLK1	ENSG00000013441.17	ENST00000321356.9:ENST00000461981.5:ENST00000473565.5:ENST00000432425.5:ENST00000409403.6:ENST00000434813.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	92	2	3.78046	3.9227800000000004	4.0651	3.54249e-4	5.16491e-5	0.0174886	0.00585477
chr3	28255157	28255256	1390680	0	+	0.373737	(0.35,0.378]	chr3	145636	10	INTRON	INTRON	CMC1	ENSG00000187118.14	ENST00000477739.1:ENST00000423894.5:ENST00000466830.6:ENST00000334841.10:ENST00000418849.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	59	2	2.63527	3.922725	5.21018	0.00443588	0.00228003	0.061054	0.0426265
chr1	32054771	32054871	63063	0	+	0.43	(0.408,0.44]	chr1	7991	90	INTRON	INTRON	KHDRBS1	ENSG00000121774.18	ENST00000484270.2	protein_coding	processed_transcript	protein_coding	processed_transcript	2	56	2	2.49983	3.9226550000000002	5.34548	0.00713527	9.40657e-4	0.0756118	0.0280776
chr16	56361936	56362033	6490626	0	-	0.360825	(0.35,0.378]	chr16	627651	6	UTR3	UTR3:EXON_MRNA	AMFR	ENSG00000159461.15	ENST00000290649.10:ENST00000492830.5:ENST00000566757.1:ENST00000568325.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	59	2	2.39583	3.92251	5.44919	0.0107976	9.66659e-4	0.0920575	0.0282401
chr2	74208821	74208919	813338	0	+	0.377551	(0.35,0.378]	chr2	90949	1	SS5_PROX	SS5_PROX:INTRON	MTHFD2	ENSG00000065911.13	ENST00000677997.1:ENST00000677170.1:ENST00000678684.1:ENST00000409804.5:ENST00000489041.2:ENST00000470592.5:ENST00000678955.1:ENST00000394053.7:ENST00000677377.1:ENST00000679055.1:ENST00000678340.1:ENST00000409601.1:ENST00000678228.1:ENST00000462026.2:ENST00000678623.1:ENST00000678731.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	59	2	2.39583	3.92251	5.44919	0.0107976	9.66659e-4	0.0920575	0.0282401
chr3	12569100	12569197	1367998	0	+	0.28866000000000003	(0.28,0.32]	chr3	144078	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	MKRN2	ENSG00000075975.17	ENST00000677816.1:ENST00000677941.1:ENST00000676544.1:ENST00000677237.1:ENST00000679143.1:ENST00000676701.1:ENST00000170447.12:ENST00000411987.5:ENST00000448482.1:ENST00000678151.1:ENST00000677142.1:ENST00000676541.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	55	2	3.08462	3.922465	4.76031	0.0078976	0.00656106	0.076155	0.0735539
chr5	175529353	175529450	2551046	0	+	0.309278	(0.28,0.32]	chr5	243564	28	UTR3	UTR3:EXON_MRNA	SFXN1	ENSG00000164466.13	ENST00000321442.10	protein_coding	protein_coding	protein_coding	protein_coding	1	55	2	3.08462	3.922465	4.76031	0.0078976	0.00656106	0.076155	0.0735539
chr7	140471382	140471482	3661546	0	-	0.31	(0.28,0.32]	chr7	339917	1	SS5_PROX	SS5_PROX:INTRON	MKRN1	ENSG00000133606.11	ENST00000255977.7:ENST00000475010.5:ENST00000495305.5:ENST00000474576.5:ENST00000480552.5:ENST00000496169.5:ENST00000443720.6:ENST00000471104.5:ENST00000467513.5:ENST00000494939.1:ENST00000498535.1:ENST00000473444.1:ENST00000475180.5:ENST00000481705.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	66	2	2.74418	3.922435	5.10069	0.00610574	0.00328589	0.0676501	0.0527031
chr16	56944569	56944667	6361280	0	+	0.469388	(0.44,0.476]	chr16	610641	13	UTR3	UTR3:EXON_MRNA	HERPUD1	ENSG00000051108.15	ENST00000439977.7	protein_coding	protein_coding	protein_coding	protein_coding	1	45	2	3.50584	3.922415	4.33899	0.0206616	8.66138e-4	0.110999	0.0266729
chr1	764422	764522	357614	0	-	0.47	(0.44,0.476]	chr1	41183	3	SS5_PROX	SS5_PROX:INTRON	ENSG00000230021:ENSG00000228327	ENSG00000230021.10:ENSG00000228327.4	ENST00000634337.2:ENST00000635509.2:ENST00000506640.2	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene:transcribed_unprocessed_pseudogene	processed_transcript	0	20	2	3.8344	3.92239	4.01038	0.0433743	0.041276	0.161534	0.148082
chr1	32229499	32229594	64549	0	+	0.473684	(0.44,0.476]	chr1	8290	4	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	EIF3I	ENSG00000084623.12	ENST00000677701.1:ENST00000677760.1:ENST00000676801.1:ENST00000677772.1:ENST00000677202.1:ENST00000677844.1:ENST00000373586.2:ENST00000677676.1:ENST00000678689.1:ENST00000676679.1:ENST00000677198.1:ENST00000678150.1:ENST00000678063.1:ENST00000676554.1:ENST00000676998.1:ENST00000677711.2:ENST00000678842.1:ENST00000678968.1:ENST00000677378.1:ENST00000677640.1:ENST00000678534.1:ENST00000679290.1:ENST00000678889.1:ENST00000677767.1:ENST00000474371.2:ENST00000677540.1:ENST00000676837.1:ENST00000678420.1:ENST00000678162.1:ENST00000677183.1:ENST00000678711.1:ENST00000678883.1:ENST00000677353.1:ENST00000677053.1:ENST00000677580.1:ENST00000679270.1:ENST00000489353.6:ENST00000471486.6:ENST00000676957.1:ENST00000678306.1:ENST00000679044.1:ENST00000678106.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	20	2	3.8344	3.92239	4.01038	0.0433743	0.041276	0.161534	0.148082
chr1	93157553	93157648	508328	0	-	0.452632	(0.44,0.476]	chr1	59917	7	INTRON	INTRON	TMED5	ENSG00000117500.13	ENST00000370282.8:ENST00000370290.7:ENST00000483033.1:ENST00000479918.5:ENST00000370280.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	20	2	3.8344	3.92239	4.01038	0.0433743	0.041276	0.161534	0.148082
chr1	148137410	148137510	545363	0	-	0.46	(0.44,0.476]	chr1	63784	3	SS5_PROX	SS5_PROX:INTRON	NBPF11	ENSG00000263956.8	ENST00000615281.4:ENST00000682118.1:ENST00000614506.4:ENST00000613531.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	20	2	3.8344	3.92239	4.01038	0.0433743	0.041276	0.161534	0.148082
chr1	150962334	150962410	223739	0	+	0.460526	(0.44,0.476]	chr1	25440	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SETDB1	ENSG00000143379.13	ENST00000692314.1:ENST00000271640.9:ENST00000692827.1:ENST00000368969.8:ENST00000498193.5:ENST00000497314.1:ENST00000528749.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	20	2	3.8344	3.92239	4.01038	0.0433743	0.041276	0.161534	0.148082
chr1	180493164	180493264	595739	0	-	0.45	(0.44,0.476]	chr1	71204	4	INTRON	INTRON	ACBD6	ENSG00000230124.8	ENST00000645415.1:ENST00000642319.1:ENST00000367595.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	20	2	3.8344	3.92239	4.01038	0.0433743	0.041276	0.161534	0.148082
chr1	196688720	196688819	286365	0	+	0.464646	(0.44,0.476]	chr1	32925	31	INTRON	INTRON	CFH:ENSG00000289697	ENSG00000000971.17:ENSG00000289697.1	ENST00000359637.3:ENST00000695968.1:ENST00000696032.1:ENST00000695970.1:ENST00000695971.1:ENST00000695972.1:ENST00000470918.2:ENST00000695969.1:ENST00000695973.1:ENST00000695974.1:ENST00000696033.1:ENST00000695975.1:ENST00000695976.1:ENST00000695981.1:ENST00000695980.1:ENST00000695978.1:ENST00000695979.1:ENST00000696026.1:ENST00000696027.1:ENST00000696028.1:ENST00000696029.1:ENST00000695983.1:ENST00000696025.1:ENST00000696024.1:ENST00000696023.1:ENST00000696019.1:ENST00000696020.1:ENST00000696021.1:ENST00000696022.1:ENST00000696018.1:ENST00000695984.1:ENST00000367429.9:ENST00000696030.1:ENST00000630130.2:ENST00000696031.1:ENST00000695986.1:ENST00000695987.1:ENST00000466229.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	20	2	3.8344	3.92239	4.01038	0.0433743	0.041276	0.161534	0.148082
chr1	230075500	230075600	334161	0	+	0.47	(0.44,0.476]	chr1	38926	77	INTRON	INTRON	GALNT2	ENSG00000143641.10	ENST00000494106.1:ENST00000366672.5:ENST00000488903.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	20	2	3.8344	3.92239	4.01038	0.0433743	0.041276	0.161534	0.148082
chr1	241514904	241515002	665966	0	-	0.44898	(0.44,0.476]	chr1	79020	8	INTRON	INTRON	FH	ENSG00000091483.8	ENST00000493477.2:ENST00000684483.1:ENST00000682162.1:ENST00000366560.4:ENST00000682567.1:ENST00000683521.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	20	2	3.8344	3.92239	4.01038	0.0433743	0.041276	0.161534	0.148082
chr10	34802979	34803079	4600172	0	-	0.47	(0.44,0.476]	chr10	423730	1062	INTRON	INTRON	PARD3	ENSG00000148498.17	ENST00000545260.5:ENST00000545693.5:ENST00000346874.9:ENST00000350537.9:ENST00000374788.8:ENST00000374789.8:ENST00000374790.8:ENST00000374794.8:ENST00000374776.6:ENST00000340077.9:ENST00000374773.6	protein_coding	protein_coding	protein_coding	protein_coding	0	20	2	3.8344	3.92239	4.01038	0.0433743	0.041276	0.161534	0.148082
chr10	50462906	50463005	4619078	0	-	0.474747	(0.44,0.476]	chr10	425440	17	INTRON	INTRON	SGMS1	ENSG00000198964.14	ENST00000429490.5:ENST00000361781.7:ENST00000619438.4:ENST00000609445.5:ENST00000498514.5:ENST00000608287.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	20	2	3.8344	3.92239	4.01038	0.0433743	0.041276	0.161534	0.148082
chr13	36311144	36311244	5574210	0	-	0.46	(0.44,0.476]	chr13	532729	23	INTRON	INTRON	SPART	ENSG00000133104.14	ENST00000438666.7:ENST00000355182.8:ENST00000451493.5:ENST00000650221.1:ENST00000494062.2:ENST00000491805.5:ENST00000460126.5:ENST00000475603.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	20	2	3.8344	3.92239	4.01038	0.0433743	0.041276	0.161534	0.148082
chr13	49580404	49580504	5591751	0	-	0.46	(0.44,0.476]	chr13	534481	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	RCBTB1	ENSG00000136144.12	ENST00000378302.7	protein_coding	protein_coding	protein_coding	protein_coding	0	20	2	3.8344	3.92239	4.01038	0.0433743	0.041276	0.161534	0.148082
chr14	71379394	71379494	5780056	0	+	0.47	(0.44,0.476]	chr14	547502	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	SIPA1L1	ENSG00000197555.10	ENST00000555989.5:ENST00000553453.5:ENST00000556408.5:ENST00000381232.8:ENST00000554362.5:ENST00000556780.5:ENST00000554126.5:ENST00000555652.5:ENST00000557151.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	20	2	3.8344	3.92239	4.01038	0.0433743	0.041276	0.161534	0.148082
chr14	90926316	90926415	5952550	0	-	0.454545	(0.44,0.476]	chr14	565137	27	INTRON	INTRON	RPS6KA5	ENSG00000100784.12	ENST00000614987.5:ENST00000648062.1:ENST00000536315.6:ENST00000556178.5:ENST00000418736.6:ENST00000554206.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	20	2	3.8344	3.92239	4.01038	0.0433743	0.041276	0.161534	0.148082
chr15	43436933	43437032	6161266	0	-	0.464646	(0.44,0.476]	chr15	586715	39	INTRON	INTRON	TP53BP1	ENSG00000067369.14	ENST00000382044.9:ENST00000263801.7:ENST00000382039.7:ENST00000411772.5:ENST00000450115.6:ENST00000572085.5:ENST00000417342.1:ENST00000413546.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	20	2	3.8344	3.92239	4.01038	0.0433743	0.041276	0.161534	0.148082
chr16	30557143	30557232	6473748	0	-	0.449438	(0.44,0.476]	chr16	625818	7	INTRON	INTRON	ZNF764	ENSG00000169951.10	ENST00000395091.3:ENST00000252797.6:ENST00000568333.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	20	2	3.8344	3.92239	4.01038	0.0433743	0.041276	0.161534	0.148082
chr16	72109217	72109314	6387387	0	+	0.453608	(0.44,0.476]	chr16	614315	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DHX38	ENSG00000140829.12	ENST00000268482.8:ENST00000579387.5:ENST00000562774.1:ENST00000563819.5:ENST00000567552.1:ENST00000567142.2:ENST00000569952.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	20	2	3.8344	3.92239	4.01038	0.0433743	0.041276	0.161534	0.148082
chr16	74342554	74342654	6523283	0	-	0.47	(0.44,0.476]	chr16	631583	3	SS3_PROX	SS3_PROX:INTRON	PDPR2P	ENSG00000214331.8	ENST00000566802.5:ENST00000563377.5:ENST00000565724.5:ENST00000429810.2	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:transcribed_unprocessed_pseudogene	0	20	2	3.8344	3.92239	4.01038	0.0433743	0.041276	0.161534	0.148082
chr16	81501892	81501992	6405570	0	+	0.47	(0.44,0.476]	chr16	615031	60	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6	protein_coding	protein_coding	protein_coding	protein_coding	0	20	2	3.8344	3.92239	4.01038	0.0433743	0.041276	0.161534	0.148082
chr16	81650600	81650699	6407064	0	+	0.444444	(0.44,0.476]	chr16	615052	45	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5:ENST00000398040.8:ENST00000564666.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	20	2	3.8344	3.92239	4.01038	0.0433743	0.041276	0.161534	0.148082
chr17	38310318	38310417	6605231	0	+	0.454545	(0.44,0.476]	chr17	642947	33	INTRON	INTRON	MRPL45	ENSG00000278845.5	ENST00000619548.1:ENST00000613675.5	protein_coding	protein_coding	protein_coding	protein_coding	0	20	2	3.8344	3.92239	4.01038	0.0433743	0.041276	0.161534	0.148082
chr18	70173412	70173511	6987141	0	-	0.474747	(0.44,0.476]	chr18	691603	40	INTRON	INTRON	RTTN	ENSG00000176225.15	ENST00000640769.2:ENST00000255674.11:ENST00000583043.5:ENST00000581161.5:ENST00000638251.1:ENST00000640376.1:ENST00000581583.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	20	2	3.8344	3.92239	4.01038	0.0433743	0.041276	0.161534	0.148082
chr19	10968396	10968495	7015631	0	+	0.464646	(0.44,0.476]	chr19	697168	27	INTRON	INTRON	SMARCA4	ENSG00000127616.20	ENST00000644737.1:ENST00000642726.1:ENST00000646484.1:ENST00000643549.1:ENST00000643296.1:ENST00000647230.1:ENST00000642628.1:ENST00000646510.1:ENST00000429416.8:ENST00000644760.1:ENST00000344626.10:ENST00000646693.2:ENST00000645460.1:ENST00000541122.6:ENST00000589677.5:ENST00000444061.8:ENST00000590574.6	protein_coding	protein_coding	protein_coding	protein_coding	0	20	2	3.8344	3.92239	4.01038	0.0433743	0.041276	0.161534	0.148082
chr19	16871811	16871898	7027810	0	+	0.471264	(0.44,0.476]	chr19	699538	3	SS5_PROX	SS5_PROX:INTRON	SIN3B	ENSG00000127511.10	ENST00000248054.10:ENST00000379803.5:ENST00000595541.1:ENST00000595900.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	20	2	3.8344	3.92239	4.01038	0.0433743	0.041276	0.161534	0.148082
chr19	57285077	57285177	7103576	0	+	0.46	(0.44,0.476]	chr19	712856	4	SS5_PROX	SS5_PROX:INTRON	ZNF460	ENSG00000197714.9	ENST00000537645.5:ENST00000360338.4:ENST00000599602.1	protein_coding	protein_coding	protein_coding	protein_coding	0	20	2	3.8344	3.92239	4.01038	0.0433743	0.041276	0.161534	0.148082
chr2	96203745	96203845	1179944	0	-	0.47	(0.44,0.476]	chr2	126153	78	INTRON	INTRON	STARD7	ENSG00000084090.14	ENST00000337288.10:ENST00000443962.1:ENST00000488084.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	20	2	3.8344	3.92239	4.01038	0.0433743	0.041276	0.161534	0.148082
chr2	108780474	108780572	848046	0	+	0.459184	(0.44,0.476]	chr2	94911	29	INTRON	INTRON	RANBP2	ENSG00000153201.16	ENST00000283195.11	protein_coding	protein_coding	protein_coding	protein_coding	0	20	2	3.8344	3.92239	4.01038	0.0433743	0.041276	0.161534	0.148082
chr22	20853982	20854082	7559636	0	-	0.45	(0.44,0.476]	chr22	773216	149	INTRON	INTRON	PI4KA	ENSG00000241973.11	ENST00000255882.11:ENST00000485963.5:ENST00000449120.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	20	2	3.8344	3.92239	4.01038	0.0433743	0.041276	0.161534	0.148082
chr22	50385796	50385895	7544615	0	+	0.464646	(0.44,0.476]	chr22	771021	133	INTRON	INTRON	PPP6R2	ENSG00000100239.16	ENST00000359139.7:ENST00000395741.7:ENST00000612753.5:ENST00000395744.7:ENST00000216061.9	protein_coding	protein_coding	protein_coding	protein_coding	0	20	2	3.8344	3.92239	4.01038	0.0433743	0.041276	0.161534	0.148082
chr3	138802057	138802156	1831173	0	-	0.464646	(0.44,0.476]	chr3	184062	51	INTRON	INTRON	PIK3CB	ENSG00000051382.9	ENST00000674063.1:ENST00000477593.5:ENST00000462898.5:ENST00000483968.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	20	2	3.8344	3.92239	4.01038	0.0433743	0.041276	0.161534	0.148082
chr3	138809043	138809143	1831243	0	-	0.46	(0.44,0.476]	chr3	184062	121	INTRON	INTRON	PIK3CB	ENSG00000051382.9	ENST00000674063.1:ENST00000477593.5:ENST00000462898.5:ENST00000483968.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	20	2	3.8344	3.92239	4.01038	0.0433743	0.041276	0.161534	0.148082
chr3	172042720	172042820	1559574	0	+	0.46	(0.44,0.476]	chr3	161523	17	INTRON	INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000421757.5:ENST00000469491.5:ENST00000336824.8:ENST00000423424.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	20	2	3.8344	3.92239	4.01038	0.0433743	0.041276	0.161534	0.148082
chr3	184138346	184138446	1581519	0	+	0.45	(0.44,0.476]	chr3	163219	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	EIF2B5	ENSG00000145191.15	ENST00000491144.5:ENST00000649814.1:ENST00000648915.2:ENST00000648314.1:ENST00000465218.3:ENST00000647636.1:ENST00000648890.1:ENST00000648682.1:ENST00000647909.1:ENST00000649688.1:ENST00000648599.1:ENST00000481054.5:ENST00000648882.1:ENST00000492226.2:ENST00000648630.1:ENST00000432982.5:ENST00000468748.7:ENST00000648256.1:ENST00000650270.1:ENST00000491008.6:ENST00000648145.1:ENST00000648189.1:ENST00000484154.2:ENST00000649545.1:ENST00000492773.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	20	2	3.8344	3.92239	4.01038	0.0433743	0.041276	0.161534	0.148082
chr4	75800041	75800136	1975284	0	+	0.473684	(0.44,0.476]	chr4	198016	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	USO1	ENSG00000138768.15	ENST00000514213.7:ENST00000264904.8	protein_coding	protein_coding	protein_coding	protein_coding	0	20	2	3.8344	3.92239	4.01038	0.0433743	0.041276	0.161534	0.148082
chr4	77740155	77740254	2166232	0	-	0.454545	(0.44,0.476]	chr4	213670	83	INTRON	INTRON	CNOT6L	ENSG00000138767.14	ENST00000504123.7:ENST00000649644.1:ENST00000515506.6:ENST00000512485.6:ENST00000504804.7:ENST00000505983.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	20	2	3.8344	3.92239	4.01038	0.0433743	0.041276	0.161534	0.148082
chr5	32298468	32298568	2598255	0	-	0.45	(0.44,0.476]	chr5	246856	16	INTRON	INTRON	MTMR12	ENSG00000150712.11	ENST00000280285.9:ENST00000382142.8:ENST00000264934.5:ENST00000505419.5:ENST00000513622.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	20	2	3.8344	3.92239	4.01038	0.0433743	0.041276	0.161534	0.148082
chr5	151803624	151803703	2522145	0	+	0.443038	(0.44,0.476]	chr5	241370	1	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	G3BP1	ENSG00000145907.16	ENST00000678070.1:ENST00000678964.1:ENST00000678925.1:ENST00000394123.7:ENST00000676978.1:ENST00000679289.1:ENST00000677493.1:ENST00000676644.1:ENST00000677757.1:ENST00000522761.6:ENST00000676827.1:ENST00000520177.6:ENST00000676634.1:ENST00000678854.1:ENST00000676911.1:ENST00000356245.8:ENST00000678646.1:ENST00000677381.1:ENST00000678904.1:ENST00000678910.1:ENST00000678101.1:ENST00000677105.1:ENST00000678369.1:ENST00000678564.1:ENST00000677923.1:ENST00000677323.1:ENST00000677687.1:ENST00000679193.1:ENST00000678825.1:ENST00000678657.1:ENST00000676507.1:ENST00000678612.1:ENST00000676715.1:ENST00000676899.1:ENST00000677658.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	20	2	3.8344	3.92239	4.01038	0.0433743	0.041276	0.161534	0.148082
chr6	12063714	12063814	2814743	0	+	0.47	(0.44,0.476]	chr6	264800	246	INTRON	INTRON	HIVEP1	ENSG00000095951.17	ENST00000491710.5:ENST00000487103.5:ENST00000379388.7:ENST00000627968.2:ENST00000541134.5:ENST00000442081.6:ENST00000478545.1	protein_coding	protein_coding	protein_coding	protein_coding	0	20	2	3.8344	3.92239	4.01038	0.0433743	0.041276	0.161534	0.148082
chr6	57050074	57050173	2877962	0	+	0.454545	(0.44,0.476]	chr6	273197	23	INTRON	INTRON	KIAA1586	ENSG00000168116.14	ENST00000545356.5:ENST00000370733.5:ENST00000488682.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	20	2	3.8344	3.92239	4.01038	0.0433743	0.041276	0.161534	0.148082
chr6	108306078	108306178	2931903	0	+	0.46	(0.44,0.476]	chr6	276227	98	INTRON	INTRON	AFG1L	ENSG00000135537.17	ENST00000430458.1:ENST00000368977.9:ENST00000421954.5:ENST00000437715.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	20	2	3.8344	3.92239	4.01038	0.0433743	0.041276	0.161534	0.148082
chr6	149659145	149659244	3246138	0	-	0.474747	(0.44,0.476]	chr6	301609	11	UTR3	UTR3:EXON_MRNA	LATS1	ENSG00000131023.13	ENST00000543571.6	protein_coding	protein_coding	protein_coding	protein_coding	0	20	2	3.8344	3.92239	4.01038	0.0433743	0.041276	0.161534	0.148082
chr7	123708005	123708102	3632250	0	-	0.463918	(0.44,0.476]	chr7	337575	8	INTRON	INTRON	WASL	ENSG00000106299.8	ENST00000223023.5	protein_coding	protein_coding	protein_coding	protein_coding	0	20	2	3.8344	3.92239	4.01038	0.0433743	0.041276	0.161534	0.148082
chr8	30703902	30703983	3932501	0	-	0.469136	(0.44,0.476]	chr8	360238	3	INTRON	INTRON	GSR	ENSG00000104687.14	ENST00000221130.11:ENST00000643653.1:ENST00000643525.1:ENST00000537535.5:ENST00000541648.5:ENST00000546342.5:ENST00000523295.5:ENST00000521479.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	20	2	3.8344	3.92239	4.01038	0.0433743	0.041276	0.161534	0.148082
chr8	41734569	41734668	3938428	0	-	0.474747	(0.44,0.476]	chr8	361117	1	INTRON	INTRON	ANK1	ENSG00000029534.21	ENST00000347528.8:ENST00000265709.13:ENST00000289734.13	protein_coding	protein_coding	protein_coding	protein_coding	0	20	2	3.8344	3.92239	4.01038	0.0433743	0.041276	0.161534	0.148082
chr8	99423267	99423366	3815389	0	+	0.474747	(0.44,0.476]	chr8	353207	311	INTRON	INTRON	VPS13B	ENSG00000132549.20	ENST00000496144.5:ENST00000683334.1:ENST00000357162.7:ENST00000358544.7:ENST00000683619.1:ENST00000682153.1:ENST00000682358.1:ENST00000682145.1:ENST00000355155.6:ENST00000682234.1:ENST00000683486.1:ENST00000522802.5:ENST00000521037.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	20	2	3.8344	3.92239	4.01038	0.0433743	0.041276	0.161534	0.148082
chr9	36600677	36600775	4116754	0	+	0.44898	(0.44,0.476]	chr9	375275	8	INTRON	INTRON	MELK	ENSG00000165304.8	ENST00000543751.5:ENST00000536860.5:ENST00000541717.4:ENST00000536329.5:ENST00000627766.2:ENST00000298048.7:ENST00000536987.5:ENST00000545008.5:ENST00000495529.5:ENST00000489766.5:ENST00000625974.2:ENST00000487398.3:ENST00000626154.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	20	2	3.8344	3.92239	4.01038	0.0433743	0.041276	0.161534	0.148082
chr9	100103128	100103225	4176772	0	+	0.463918	(0.44,0.476]	chr9	380815	4	INTRON	INTRON	INVS	ENSG00000119509.13	ENST00000262457.7:ENST00000496467.5:ENST00000262456.6:ENST00000374921.3:ENST00000466647.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	20	2	3.8344	3.92239	4.01038	0.0433743	0.041276	0.161534	0.148082
chr9	112163779	112163878	4316667	0	-	0.464646	(0.44,0.476]	chr9	396993	58	INTRON	INTRON	SUSD1	ENSG00000106868.17	ENST00000374270.8:ENST00000374263.7:ENST00000355396.7:ENST00000374264.6	protein_coding	protein_coding	protein_coding	protein_coding	0	20	2	3.8344	3.92239	4.01038	0.0433743	0.041276	0.161534	0.148082
chrX	120162370	120162467	7713691	0	+	0.474227	(0.44,0.476]	chrX	789293	16	INTRON	INTRON	RHOXF2	ENSG00000131721.6	ENST00000371388.5	protein_coding	protein_coding	protein_coding	protein_coding	0	20	2	3.8344	3.92239	4.01038	0.0433743	0.041276	0.161534	0.148082
chrX	129573651	129573750	7721769	0	+	0.474747	(0.44,0.476]	chrX	789774	39	INTRON	INTRON	OCRL	ENSG00000122126.18	ENST00000371113.9:ENST00000357121.5:ENST00000691455.1:ENST00000693473.1:ENST00000646010.1:ENST00000647245.1:ENST00000646914.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	20	2	3.8344	3.92239	4.01038	0.0433743	0.041276	0.161534	0.148082
chr14	96852231	96852330	5811416	0	+	0.333333	(0.32,0.35]	chr14	551049	34	INTRON	INTRON	VRK1	ENSG00000100749.9	ENST00000553683.2:ENST00000680538.1:ENST00000555351.2:ENST00000681195.1:ENST00000681524.1:ENST00000680084.1:ENST00000679533.1:ENST00000681598.1:ENST00000679727.1:ENST00000679758.1:ENST00000680509.1:ENST00000557222.6:ENST00000679977.1:ENST00000680387.1:ENST00000680335.1:ENST00000680683.1:ENST00000681474.1:ENST00000216639.8:ENST00000681363.1:ENST00000681538.1:ENST00000679736.1:ENST00000681176.1:ENST00000680922.1:ENST00000679903.1:ENST00000557352.2:ENST00000681101.1:ENST00000681419.1:ENST00000680348.1:ENST00000679941.1:ENST00000679452.1:ENST00000680849.1:ENST00000679770.1:ENST00000681493.1:ENST00000681778.1:ENST00000680993.1:ENST00000681355.1:ENST00000681695.1:ENST00000681344.1:ENST00000680007.1:ENST00000679918.1:ENST00000681785.1:ENST00000679816.1:ENST00000680756.1:ENST00000681249.1:ENST00000680526.1:ENST00000679365.1:ENST00000680851.1:ENST00000679506.1:ENST00000679650.1:ENST00000679462.1:ENST00000680724.1:ENST00000680339.1:ENST00000680384.1:ENST00000680222.1:ENST00000681077.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	46	2	3.07975	3.9223800000000004	4.76501	0.0114287	0.00554235	0.0886611	0.0674105
chr5	159200759	159200857	2759100	0	-	0.346939	(0.32,0.35]	chr5	260362	56	INTRON	INTRON	RNF145	ENSG00000145860.12	ENST00000424310.7:ENST00000519865.5:ENST00000274542.6:ENST00000611185.4:ENST00000521606.6:ENST00000518802.5:ENST00000520638.1:ENST00000520548.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	46	2	3.07975	3.9223800000000004	4.76501	0.0114287	0.00554235	0.0886611	0.0674105
chr6	125012376	125012476	2951979	0	+	0.34	(0.32,0.35]	chr6	277700	27	INTRON	INTRON	RNF217	ENSG00000146373.17	ENST00000521654.7:ENST00000560949.5:ENST00000519565.5:ENST00000454842.2:ENST00000368414.6:ENST00000359704.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	46	2	3.07975	3.9223800000000004	4.76501	0.0114287	0.00554235	0.0886611	0.0674105
chr3	177172414	177172514	1872198	0	-	0.42	(0.408,0.44]	chr3	187438	11	INTRON	INTRON	TBL1XR1	ENSG00000177565.18	ENST00000457928.7:ENST00000430069.5:ENST00000673974.1:ENST00000352800.10:ENST00000422442.6:ENST00000428970.5:ENST00000424913.5:ENST00000437738.5:ENST00000431421.5:ENST00000635794.1:ENST00000630796.2:ENST00000450267.5:ENST00000630833.2:ENST00000431674.5:ENST00000422066.5:ENST00000443315.5:ENST00000627825.2:ENST00000427349.5:ENST00000413084.5:ENST00000637137.1:ENST00000491623.2:ENST00000637544.1:ENST00000636187.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	86	2	2.11768	3.922335	5.72699	0.00352982	1.93446e-4	0.0546236	0.0127226
chr10	124785846	124785946	4712487	0	-	0.43	(0.408,0.44]	chr10	434817	107	INTRON	INTRON	EEF1AKMT2	ENSG00000203791.15	ENST00000652548.1:ENST00000466270.5:ENST00000368836.7:ENST00000464099.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	45	2	2.78122	3.922325	5.06343	0.015812	0.00101725	0.101453	0.0293497
chr19	18841180	18841280	7033412	0	+	0.44	(0.408,0.44]	chr19	700970	75	INTRON	INTRON	UPF1	ENSG00000005007.13	ENST00000262803.10:ENST00000599848.5:ENST00000601981.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	45	2	2.78122	3.922325	5.06343	0.015812	0.00101725	0.101453	0.0293497
chr5	38993946	38994045	2604839	0	-	0.414141	(0.408,0.44]	chr5	247872	25	INTRON	INTRON	RICTOR	ENSG00000164327.13	ENST00000357387.8:ENST00000511516.5:ENST00000296782.9:ENST00000510711.5:ENST00000513566.1:ENST00000514735.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	45	2	2.78122	3.922325	5.06343	0.015812	0.00101725	0.101453	0.0293497
chr16	81467799	81467899	6405227	0	+	0.48	(0.476,0.515]	chr16	615026	219	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8	protein_coding	protein_coding	protein_coding	protein_coding	2	57	2	2.26034	3.922295	5.58425	0.0166235	2.97744e-4	0.110511	0.0160246
chr2	176316118	176316218	925685	0	+	0.39	(0.378,0.408]	chr2	101688	114	INTRON	INTRON	MTX2	ENSG00000128654.14	ENST00000420864.5:ENST00000249442.11:ENST00000423461.6:ENST00000443241.5:ENST00000452865.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	57	2	2.56408	3.922205	5.28033	0.00566993	0.00143651	0.0678837	0.0340925
chr20	32849517	32849615	7257468	0	+	0.408163	(0.378,0.408]	chr20	737285	9	UTR3	UTR3:EXON_MRNA	MAPRE1	ENSG00000101367.9	ENST00000375571.6	protein_coding	protein_coding	protein_coding	protein_coding	2	57	2	2.51464	3.92216	5.32968	0.00684341	0.00119786	0.0748032	0.0315806
chr1	45585197	45585295	93209	0	+	0.357143	(0.35,0.378]	chr1	12558	6	INTRON	INTRON	NASP	ENSG00000132780.17	ENST00000437901.6:ENST00000537798.5:ENST00000437362.6:ENST00000350030.8:ENST00000464190.6:ENST00000527359.5:ENST00000528084.5:ENST00000453748.5:ENST00000525515.5:ENST00000527470.5:ENST00000529333.5:ENST00000531532.5:ENST00000530840.5:ENST00000528238.5:ENST00000534101.1:ENST00000470768.5:ENST00000372052.8:ENST00000351223.7:ENST00000629893.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	200	2	3.80701	3.92204	4.03707	2.34133e-4	1.0519e-6	0.0135358	6.32938e-4
chr11	86062459	86062559	5014777	0	-	0.47	(0.44,0.476]	chr11	473022	305	INTRON	INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000630913.2:ENST00000528398.5:ENST00000356360.9:ENST00000534412.5:ENST00000531558.1:ENST00000531930.5:ENST00000532041.5:ENST00000525162.5:ENST00000528256.1:ENST00000528411.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	77	2	2.22651	3.922005	5.6175	0.00376161	2.84938e-4	0.0562562	0.015495
chr4	123033993	123034093	2036750	0	+	0.33	(0.32,0.35]	chr4	202362	52	INTRON	INTRON	SPATA5	ENSG00000145375.9	ENST00000675612.1:ENST00000274008.5:ENST00000422835.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	46	2	2.71269	3.9219600000000003	5.13123	0.0181461	0.00394704	0.114853	0.0548259
chr1	51430552	51430652	453455	0	-	0.28	[0,0.28]	chr1	54371	83	INTRON	INTRON	EPS15	ENSG00000085832.17	ENST00000371733.8:ENST00000371730.6	protein_coding	protein_coding	protein_coding	protein_coding	1	52	2	2.95729	3.9217700000000004	4.88625	0.0173315	0.0101824	0.104099	0.089002
chrX	74247433	74247531	7841150	0	-	0.27551	[0,0.28]	chrX	799716	25	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	FTX	ENSG00000230590.12	ENST00000603672.5:ENST00000430772.6:ENST00000602776.6:ENST00000638681.1:ENST00000652319.1:ENST00000661133.1:ENST00000652071.1:ENST00000602812.6:ENST00000651703.1:ENST00000653018.1:ENST00000658448.1:ENST00000662240.1:ENST00000652527.1:ENST00000651451.1:ENST00000657611.1:ENST00000660481.1:ENST00000659574.1:ENST00000661084.1:ENST00000662494.1:ENST00000670936.1:ENST00000602420.6:ENST00000658203.1:ENST00000638985.1:ENST00000691187.1:ENST00000603037.2:ENST00000687056.1:ENST00000654870.2:ENST00000652540.1:ENST00000652331.2:ENST00000652013.1:ENST00000669263.1:ENST00000657070.1:ENST00000665069.1:ENST00000651936.1:ENST00000652496.1:ENST00000653874.2:ENST00000661335.1:ENST00000664123.1:ENST00000658439.1:ENST00000666535.1:ENST00000652970.1:ENST00000423992.3:ENST00000665313.2:ENST00000651140.1:ENST00000660100.1:ENST00000693483.1:ENST00000656041.1:ENST00000657327.1:ENST00000664343.1:ENST00000656977.1:ENST00000671343.1:ENST00000659407.1:ENST00000671067.1:ENST00000660829.1	lncRNA	lncRNA	lncRNA	lncRNA	1	52	2	2.95729	3.9217700000000004	4.88625	0.0173315	0.0101824	0.104099	0.089002
chr2	7042804	7042902	688229	0	+	0.428571	(0.408,0.44]	chr2	80667	32	UTR3	UTR3:EXON_MRNA:INTRON	RNF144A	ENSG00000151692.15	ENST00000320892.11:ENST00000432850.1	protein_coding	protein_coding	protein_coding	protein_coding	3	74	2	2.29777	3.92169	5.54561	0.0067764	1.20601e-4	0.0711802	0.00938389
chr5	10407402	10407502	2318205	0	+	0.27	[0,0.28]	chr5	224701	2	SS5_PROX	SS5_PROX:INTRON	MARCHF6	ENSG00000145495.16	ENST00000274140.10:ENST00000449913.6:ENST00000511802.5:ENST00000503788.5:ENST00000510792.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	54	2	3.2223	3.92157	4.62084	0.0313633	0.00422777	0.13151	0.0595466
chr18	36054813	36054912	6963419	0	-	0.393939	(0.378,0.408]	chr18	689080	15	INTRON	INTRON	RPRD1A	ENSG00000141425.18	ENST00000399022.9:ENST00000590898.5:ENST00000357384.8:ENST00000588737.5:ENST00000589050.1:ENST00000592674.1:ENST00000588459.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:nonsense_mediated_decay:processed_transcript	1	46	2	2.72993	3.9215400000000002	5.11315	0.0188736	9.26795e-4	0.108861	0.0278442
chr7	132944438	132944538	3644507	0	-	0.24	[0,0.28]	chr7	338848	571	INTRON	INTRON	CHCHD3	ENSG00000106554.13	ENST00000262570.10:ENST00000448878.6:ENST00000496427.5:ENST00000423635.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	52	2	2.63238	3.9214599999999997	5.21054	0.0259691	0.00758653	0.133676	0.0749063
chr3	32738785	32738885	1393664	0	+	0.23	[0,0.28]	chr3	145926	9	INTRON	INTRON	CNOT10	ENSG00000182973.20	ENST00000331889.10:ENST00000328834.10:ENST00000435630.5:ENST00000454516.7:ENST00000416457.5:ENST00000430408.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	70	2	2.28885	3.921205	5.55356	0.0181093	0.00278704	0.114853	0.0469265
chr1	40708760	40708859	82530	0	+	0.373737	(0.35,0.378]	chr1	10706	127	INTRON	INTRON	NFYC	ENSG00000066136.21	ENST00000467203.5:ENST00000424419.6:ENST00000427410.6:ENST00000447388.8:ENST00000425457.6:ENST00000453631.5:ENST00000456393.6:ENST00000372654.5:ENST00000534399.5:ENST00000372653.5:ENST00000372669.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	44	2	3.05136	3.921075	4.79079	0.00846427	0.00578894	0.0776969	0.0684334
chr11	34091713	34091809	4768067	0	+	0.354167	(0.35,0.378]	chr11	441018	2	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	CAPRIN1	ENSG00000135387.21	ENST00000341394.9:ENST00000528856.5:ENST00000389645.7:ENST00000532820.5:ENST00000530820.5:ENST00000529307.1:ENST00000533657.5:ENST00000528948.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	44	2	3.05136	3.921075	4.79079	0.00846427	0.00578894	0.0776969	0.0684334
chr1	31047526	31047626	412714	0	-	0.42	(0.408,0.44]	chr1	49733	183	INTRON	INTRON	PUM1	ENSG00000134644.16	ENST00000426105.7:ENST00000373747.7:ENST00000257075.9:ENST00000424085.6:ENST00000525843.5:ENST00000440538.6:ENST00000373741.8:ENST00000373742.6:ENST00000526215.5:ENST00000525948.5:ENST00000480602.1:ENST00000524516.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	46	2	2.43988	3.92098	5.40208	0.0398236	2.37882e-4	0.143072	0.0136195
chr16	12756105	12756205	6447382	0	-	0.43	(0.408,0.44]	chr16	621153	507	INTRON	INTRON	CPPED1	ENSG00000103381.12	ENST00000381774.9:ENST00000433677.6:ENST00000261660.4	protein_coding	protein_coding	protein_coding	protein_coding	1	46	2	2.43988	3.92098	5.40208	0.0398236	2.37882e-4	0.143072	0.0136195
chr17	57102423	57102520	6632520	0	+	0.443299	(0.44,0.476]	chr17	647891	3	INTRON	INTRON	AKAP1	ENSG00000121057.13	ENST00000575322.1:ENST00000337714.8:ENST00000571629.5:ENST00000621116.4:ENST00000575186.5:ENST00000570423.5:ENST00000573085.1:ENST00000572814.1:ENST00000574683.1:ENST00000572557.5:ENST00000481416.5:ENST00000539273.5:ENST00000576591.1:ENST00000314126.4:ENST00000572156.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	58	2	2.14573	3.9209050000000003	5.69608	0.0238593	2.01872e-4	0.129075	0.0129814
chr1	202157338	202157438	619699	0	-	0.54	(0.515,0.57]	chr1	73473	2	SS5_PROX	SS5_PROX:INTRON	PTPN7	ENSG00000143851.16	ENST00000309017.8:ENST00000367279.8:ENST00000495688.5:ENST00000691036.1:ENST00000462815.5:ENST00000496197.5:ENST00000480836.5:ENST00000477554.6:ENST00000492977.5:ENST00000477625.5:ENST00000629151.2:ENST00000479092.5:ENST00000476061.5:ENST00000464870.5:ENST00000467283.5:ENST00000435759.6:ENST00000486116.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	41	2	2.46104	3.9209000000000005	5.38076	0.032841	3.24968e-4	0.145164	0.0165891
chr14	45096325	45096423	5714649	0	+	0.326531	(0.32,0.35]	chr14	542472	2	EXON_MRNA	EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PRPF39	ENSG00000185246.18	ENST00000355765.11:ENST00000477626.5:ENST00000424478.5:ENST00000554439.5:ENST00000554429.5:ENST00000556353.1:ENST00000554081.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	62	2	2.71053	3.9208800000000004	5.13123	0.00394704	0.00346747	0.0548259	0.0539802
chr3	72425605	72425705	1745711	0	-	0.35	(0.32,0.35]	chr3	177368	451	INTRON	INTRON	RYBP	ENSG00000163602.12	ENST00000477973.5	protein_coding	protein_coding	protein_coding	protein_coding	2	62	2	2.71053	3.9208800000000004	5.13123	0.00394704	0.00346747	0.0548259	0.0539802
chr2	156252727	156252824	1248960	0	-	0.463918	(0.44,0.476]	chr2	132439	2	INTRON	INTRON	LINC01876	ENSG00000226383.7	ENST00000635799.1:ENST00000662073.1:ENST00000659502.1:ENST00000428651.2:ENST00000661513.1:ENST00000657334.1:ENST00000638047.1:ENST00000637554.1:ENST00000636956.1:ENST00000637665.1:ENST00000637476.1:ENST00000637324.1	lncRNA	lncRNA	lncRNA	lncRNA	2	94	2	3.75608	3.92076	4.08544	2.6487e-4	7.98065e-5	0.0144071	0.00801397
chr4	184727038	184727137	2304825	0	-	0.474747	(0.44,0.476]	chr4	222957	16	INTRON	INTRON	CENPU	ENSG00000151725.12	ENST00000281453.10:ENST00000510146.5:ENST00000514781.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	47	2	3.22192	3.92073	4.61954	0.00506805	0.00360821	0.0646039	0.0533855
chr12	22651442	22651542	5095009	0	+	0.43	(0.408,0.44]	chr12	481236	50	INTRON	INTRON	ETNK1	ENSG00000139163.16	ENST00000671733.1:ENST00000266517.9:ENST00000538218.2:ENST00000673496.1:ENST00000673406.1:ENST00000672995.1:ENST00000539974.1:ENST00000673188.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	42	2	3.08738	3.92068	4.75398	0.00703931	0.00478231	0.0718189	0.0636201
chr7	54756468	54756556	3534315	0	-	0.511364	(0.476,0.515]	chr7	329620	2	INTRON	INTRON	SEC61G	ENSG00000132432.14	ENST00000395535.7:ENST00000415949.5:ENST00000352861.9:ENST00000450622.1:ENST00000460484.5:ENST00000480303.1:ENST00000461536.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	44	2	3.40003	3.920655	4.44128	0.0151924	0.00139193	0.0994339	0.0341261
chr11	5343331	5343424	4896648	0	-	0.451613	(0.44,0.476]	chr11	459168	8	CDS	CDS:EXON_MRNA:INTRON	HBG2:ENSG00000239920:HBE1:OR51B5	ENSG00000196565.15:ENSG00000239920.2:ENSG00000213931.7:ENSG00000167355.8	ENST00000380252.6:ENST00000380259.7:ENST00000643199.1:ENST00000292896.3:ENST00000380237.5:ENST00000420726.6:ENST00000420465.6:ENST00000415970.6:ENST00000300773.3:ENST00000418729.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:nonsense_mediated_decay:processed_transcript	3	125	2	3.60166	3.920605	4.23955	5.68842e-5	1.88744e-5	0.00655354	0.00332085
chr11	119009138	119009236	4874086	0	+	0.530612	(0.515,0.57]	chr11	455385	70	INTRON	INTRON	CENATAC	ENSG00000186166.9	ENST00000334418.6:ENST00000524670.5:ENST00000526463.5:ENST00000532132.5:ENST00000580556.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	76	2	2.32281	3.92056	5.51831	0.00252428	6.99834e-5	0.0446656	0.00692586
chr12	91496416	91496516	5384180	0	-	0.39	(0.378,0.408]	chr12	513479	967	INTRON	INTRON	ENSG00000289605	ENSG00000289605.1	ENST00000685093.1	lncRNA	lncRNA	lncRNA	lncRNA	2	57	2	2.61188	3.92056	5.22924	0.0047055	0.00172721	0.0631419	0.0374701
chr16	23688845	23688942	6323735	0	+	0.57732000000000006	(0.57,1]	chr16	605670	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PLK1	ENSG00000166851.15	ENST00000562272.5:ENST00000300093.9:ENST00000564794.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	13	252	2	3.74927	3.92045	4.09163	5.25348e-9	2.80224e-11	1.75932e-5	5.73362e-7
chr1	165831726	165831826	243790	0	+	0.37	(0.35,0.378]	chr1	29139	34	INTRON	INTRON	UCK2	ENSG00000143179.16	ENST00000367879.9:ENST00000642653.1	protein_coding	protein_coding	protein_coding	protein_coding	1	51	2	3.25549	3.92043	4.58537	0.00703328	0.00363602	0.0754576	0.0535085
chr13	33832053	33832153	5467495	0	+	0.37	(0.35,0.378]	chr13	523958	3	INTRON	INTRON	RFC3	ENSG00000133119.13	ENST00000434425.5:ENST00000380071.8:ENST00000616236.1	protein_coding	protein_coding	protein_coding	protein_coding	1	51	2	3.25549	3.92043	4.58537	0.00703328	0.00363602	0.0754576	0.0535085
chr18	26083951	26084051	6959673	0	-	0.41	(0.408,0.44]	chr18	688499	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	SS18	ENSG00000141380.14	ENST00000415083.7:ENST00000542420.6:ENST00000579640.5:ENST00000269138.9:ENST00000269137.11:ENST00000585121.5:ENST00000539244.6:ENST00000585241.5:ENST00000578954.5:ENST00000579061.5:ENST00000577636.5:ENST00000584083.5:ENST00000578700.5:ENST00000582792.5:ENST00000581021.5:ENST00000577572.5:ENST00000582448.5:ENST00000581570.5:ENST00000577751.5:ENST00000580751.5:ENST00000580642.2:ENST00000578595.1:ENST00000583595.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	42	2	2.82042	3.92035	5.02028	0.0120121	0.00303216	0.0962115	0.0493883
chr2	174190881	174190981	1270276	0	-	0.41	(0.408,0.44]	chr2	134282	485	INTRON	INTRON	OLA1	ENSG00000138430.16	ENST00000284719.8:ENST00000344357.9:ENST00000428402.6:ENST00000409546.5:ENST00000429575.1	protein_coding	protein_coding	protein_coding	protein_coding	1	42	2	2.82042	3.92035	5.02028	0.0120121	0.00303216	0.0962115	0.0493883
chr3	33837515	33837609	1394793	0	+	0.414894	(0.408,0.44]	chr3	146090	9	INTRON	INTRON	PDCD6IP	ENSG00000170248.15	ENST00000457054.6:ENST00000648706.1:ENST00000307296.8:ENST00000412887.5:ENST00000487821.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	42	2	2.82042	3.92035	5.02028	0.0120121	0.00303216	0.0962115	0.0493883
chr4	40211364	40211464	1955108	0	+	0.44	(0.408,0.44]	chr4	195823	18	INTRON	INTRON	RHOH	ENSG00000168421.13	ENST00000505618.5:ENST00000615577.4:ENST00000613272.4:ENST00000507851.5:ENST00000503754.5:ENST00000508513.5:ENST00000511967.5:ENST00000617441.4:ENST00000503941.5:ENST00000622175.4:ENST00000619474.4:ENST00000615083.4:ENST00000610353.4:ENST00000614836.1:ENST00000514839.1:ENST00000513894.5:ENST00000381799.10:ENST00000515702.1:ENST00000515718.5:ENST00000515503.5:ENST00000504638.1:ENST00000511121.5:ENST00000503978.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	42	2	2.82042	3.92035	5.02028	0.0120121	0.00303216	0.0962115	0.0493883
chr8	128034059	128034158	3862479	0	+	0.40404	(0.378,0.408]	chr8	355537	14	INTRON	INTRON	PVT1	ENSG00000249859.13	ENST00000667305.1:ENST00000690350.1:ENST00000653522.1:ENST00000661830.1:ENST00000657289.1:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000657211.1:ENST00000653845.1:ENST00000651587.1:ENST00000692980.1:ENST00000654324.1:ENST00000657693.1:ENST00000666080.1:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000662410.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000657356.1:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000667714.1:ENST00000654105.1:ENST00000664995.1:ENST00000670714.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000668123.1:ENST00000666776.1:ENST00000659912.1:ENST00000670532.1:ENST00000523068.2:ENST00000671088.1:ENST00000663461.1:ENST00000513868.6:ENST00000692433.1:ENST00000523190.7:ENST00000685606.1:ENST00000690788.1:ENST00000685634.1:ENST00000653990.1:ENST00000655783.1:ENST00000656411.1:ENST00000664742.1:ENST00000655099.1:ENST00000662709.1:ENST00000512617.7:ENST00000660122.1:ENST00000666452.1:ENST00000659666.1:ENST00000659892.1:ENST00000521600.5:ENST00000522875.5:ENST00000653497.1:ENST00000668098.1:ENST00000659106.1:ENST00000666147.1:ENST00000658350.1:ENST00000656999.1:ENST00000664610.1:ENST00000671092.1:ENST00000653853.1:ENST00000652492.1	lncRNA	lncRNA	lncRNA	lncRNA	1	46	2	2.66785	3.92033	5.17281	0.0224639	7.27294e-4	0.11692	0.0245647
chr12	50157692	50157791	5323079	0	-	0.313131	(0.28,0.32]	chr12	507529	30	INTRON	INTRON	CERS5	ENSG00000139624.14	ENST00000317551.12:ENST00000422340.6:ENST00000551697.5:ENST00000380189.8:ENST00000547787.5:ENST00000438450.6:ENST00000542320.5:ENST00000547800.2:ENST00000549389.5:ENST00000550258.5:ENST00000547455.5:ENST00000546514.1:ENST00000549942.1:ENST00000550899.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	48	2	2.97333	3.92032	4.86731	0.0116253	0.00857834	0.0889104	0.083729
chr9	131488496	131488596	4217948	0	+	0.6	(0.57,1]	chr9	386869	4	SS5_PROX	SS5_PROX:INTRON	PRRC2B	ENSG00000288701.1	ENST00000684596.1:ENST00000683519.1:ENST00000682501.1:ENST00000682662.1:ENST00000683161.1	protein_coding	protein_coding	protein_coding	protein_coding	2	37	2	2.56996	3.920315	5.27067	0.00499145	5.68536e-5	0.0646039	0.00655354
chr10	43609650	43609750	4429551	0	+	0.38	(0.378,0.408]	chr10	408269	3	SS5_PROX	SS5_PROX:INTRON	ZNF485	ENSG00000198298.13	ENST00000430885.5:ENST00000374435.3:ENST00000361807.8	protein_coding	protein_coding	protein_coding	protein_coding	1	48	2	3.14892	3.920305	4.69169	0.00499984	0.00432302	0.0617433	0.0599409
chr17	19188414	19188514	6570510	0	+	0.59	(0.57,1]	chr17	638907	5	EXON_SMALL	EXON_SMALL	SNORD3A	ENSG00000263934.5	ENST00000584923.1	snoRNA	snoRNA	snoRNA	snoRNA	17	408	2	3.38787	3.9202500000000002	4.45263	4.4274e-7	1e-12	3.501e-4	4.97648e-8
chr2	167824927	167825027	1258049	0	-	0.37	(0.35,0.378]	chr2	133322	93	INTRON	INTRON	B3GALT1-AS1	ENSG00000235335.3	ENST00000430546.2:ENST00000657553.1:ENST00000670221.1:ENST00000436982.2	lncRNA	lncRNA	lncRNA	lncRNA	5	216	2	3.82904	3.92023	4.01142	2.25301e-5	3.50907e-7	0.00386909	3.00241e-4
chr3	152380781	152380881	1536109	0	+	0.33	(0.32,0.35]	chr3	160003	452	INTRON	INTRON	MBNL1	ENSG00000152601.18	ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000495875.6:ENST00000324210.10:ENST00000493459.5:ENST00000459747.1:ENST00000460591.5:ENST00000545754.5:ENST00000357472.7:ENST00000324196.9:ENST00000498502.5:ENST00000463374.5:ENST00000485910.5:ENST00000465907.6:ENST00000492948.5:ENST00000485509.5:ENST00000464596.5	protein_coding	protein_coding	protein_coding	protein_coding	4	85	2	1.84365	3.920205	5.99676	0.0184323	1.55894e-4	0.116493	0.0113565
chr15	65738705	65738790	6209252	0	-	0.388235	(0.378,0.408]	chr15	592582	1	CDS	CDS:EXON_MRNA	DENND4A	ENSG00000174485.16	ENST00000443035.8:ENST00000431932.6:ENST00000635620.2:ENST00000564674.5:ENST00000568515.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	46	2	2.78946	3.920185	5.05091	0.0158859	0.00118558	0.101453	0.031662
chr21	37506454	37506554	7407642	0	+	0.38	(0.378,0.408]	chr21	754954	1	SS5_PROX	SS5_PROX:INTRON	DYRK1A	ENSG00000157540.22	ENST00000646523.1:ENST00000647425.1:ENST00000647188.2:ENST00000647504.1:ENST00000644942.1:ENST00000338785.8:ENST00000643624.1:ENST00000398960.7:ENST00000646548.1:ENST00000398956.2:ENST00000646224.1:ENST00000646351.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	46	2	2.78946	3.920185	5.05091	0.0158859	0.00118558	0.101453	0.031662
chr6	83187933	83188023	3145824	0	-	0.433333	(0.408,0.44]	chr6	293308	5	INTRON	INTRON	PGM3	ENSG00000013375.16	ENST00000513973.6:ENST00000512866.5:ENST00000650640.1:ENST00000616566.5:ENST00000283977.9:ENST00000651425.1:ENST00000650642.1:ENST00000651204.1:ENST00000652222.1:ENST00000506587.5:ENST00000509219.2:ENST00000652468.1:ENST00000510258.1:ENST00000505470.5:ENST00000507554.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	44	2	3.41323	3.92018	4.42713	0.0173083	0.00129989	0.104099	0.0333764
chr11	242747	242846	4718094	0	+	0.363636	(0.35,0.378]	chr11	435646	33	INTRON	INTRON	PSMD13	ENSG00000185627.19	ENST00000529372.5:ENST00000532097.6:ENST00000431206.6:ENST00000534590.5:ENST00000528906.5:ENST00000525665.5:ENST00000527047.5:ENST00000352303.9:ENST00000382671.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	48	2	3.54186	3.920125	4.29839	0.0294717	8.14353e-4	0.128055	0.02604
chr15	90755733	90755832	6101301	0	+	0.292929	(0.28,0.32]	chr15	580878	4	INTRON	INTRON	BLM	ENSG00000197299.13	ENST00000355112.8:ENST00000648453.1:ENST00000681142.1:ENST00000560509.5:ENST00000559724.5:ENST00000680772.1:ENST00000558599.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	48	2	2.73945	3.92007	5.10069	0.017681	0.00610574	0.11319	0.0676501
chr8	140215609	140215709	4072904	0	-	0.5	(0.476,0.515]	chr8	370046	1336	INTRON	INTRON	TRAPPC9	ENSG00000167632.18	ENST00000648948.2:ENST00000438773.4:ENST00000520857.5:ENST00000521667.5:ENST00000517667.5:ENST00000520532.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	56	2	2.43242	3.9200549999999996	5.40769	0.0091895	6.23078e-4	0.0855292	0.0229151
chr9	85997569	85997667	4149505	0	+	0.428571	(0.408,0.44]	chr9	378467	6	INTRON	INTRON	NAA35	ENSG00000135040.16	ENST00000361671.10	protein_coding	protein_coding	protein_coding	protein_coding	2	56	2	2.44674	3.91997	5.3932	0.00868283	7.81492e-4	0.0842798	0.0257168
chr16	74598168	74598268	6525243	0	-	0.44	(0.408,0.44]	chr16	631842	350	INTRON	INTRON	GLG1	ENSG00000090863.12	ENST00000205061.9:ENST00000422840.7:ENST00000447066.6:ENST00000562090.5:ENST00000567951.5:ENST00000627032.2:ENST00000565260.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	73	2	2.1226	3.919885	5.71717	0.012812	5.09043e-5	0.0926667	0.00585477
chr16	89534582	89534681	6420620	0	+	0.525253	(0.515,0.57]	chr16	616256	9	INTRON	INTRON	SPG7	ENSG00000197912.16	ENST00000647079.1:ENST00000646303.1:ENST00000643649.1:ENST00000643307.1:ENST00000644498.1:ENST00000645897.1:ENST00000643668.1:ENST00000644225.1:ENST00000645818.2:ENST00000645977.1:ENST00000645063.1:ENST00000646263.1:ENST00000643724.1:ENST00000644781.1:ENST00000644901.1:ENST00000645042.1:ENST00000646531.1:ENST00000646930.1:ENST00000642436.1:ENST00000644210.1:ENST00000646589.1:ENST00000268704.7:ENST00000646826.1:ENST00000646716.1:ENST00000643345.1:ENST00000341316.6:ENST00000646958.1:ENST00000643105.1:ENST00000645354.1:ENST00000642334.1:ENST00000647227.1:ENST00000646445.1:ENST00000643954.1:ENST00000646399.1:ENST00000644671.1:ENST00000644748.1:ENST00000643496.1:ENST00000647032.1:ENST00000644751.1:ENST00000642427.1:ENST00000643370.1:ENST00000645886.1:ENST00000646454.1:ENST00000561945.2:ENST00000644171.1:ENST00000566682.2:ENST00000645258.1:ENST00000644044.1:ENST00000642263.1:ENST00000644556.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	40	2	2.56306	3.919785	5.27651	0.0247751	5.11033e-4	0.131869	0.020816
chr2	36852965	36853062	1093451	0	-	0.515464	(0.515,0.57]	chr2	117135	15	INTRON	INTRON	STRN	ENSG00000115808.12	ENST00000263918.9:ENST00000379213.3	protein_coding	protein_coding	protein_coding	protein_coding	1	40	2	2.56306	3.919785	5.27651	0.0247751	5.11033e-4	0.131869	0.020816
chr2	177218145	177218245	925975	0	+	0.55	(0.515,0.57]	chr2	101757	3	SS5_PROX	SS5_PROX:INTRON	HNRNPA3	ENSG00000170144.21	ENST00000392524.6:ENST00000679159.1:ENST00000678111.1:ENST00000678421.1:ENST00000677863.1:ENST00000676681.1:ENST00000676629.1:ENST00000677337.1:ENST00000676488.1:ENST00000677043.1:ENST00000676874.1:ENST00000676762.1:ENST00000411529.6:ENST00000676736.1:ENST00000483137.2:ENST00000677508.1:ENST00000435711.5:ENST00000679328.1:ENST00000432457.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	40	2	2.56306	3.919785	5.27651	0.0247751	5.11033e-4	0.131869	0.020816
chr1	223985034	223985129	643728	0	-	0.284211	(0.28,0.32]	chr1	76019	2	INTRON	INTRON	GTF2IP20	ENSG00000272645.4	ENST00000634905.2:ENST00000431663.1:ENST00000685304.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	1	53	2	2.39347	3.91965	5.44583	0.0504457	5.8721e-4	0.156383	0.0220073
chr4	2896702	2896800	1915566	0	+	0.387755	(0.378,0.408]	chr4	192308	16	INTRON	INTRON	ADD1	ENSG00000087274.19	ENST00000683351.1:ENST00000398125.5:ENST00000264758.11:ENST00000508684.5:ENST00000513328.6:ENST00000509039.5:ENST00000503455.6:ENST00000355842.7:ENST00000651918.1:ENST00000503169.5:ENST00000398129.5:ENST00000398123.6:ENST00000506157.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	45	2	3.4275	3.919595	4.41169	0.0199606	0.00126053	0.109608	0.03295
chr18	13052518	13052618	6877201	0	+	0.42	(0.408,0.44]	chr18	681437	2	SS3_PROX	SS3_PROX:INTRON	CEP192	ENSG00000101639.19	ENST00000325971.12:ENST00000506447.5:ENST00000589596.5:ENST00000513432.5:ENST00000511820.6:ENST00000510237.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	45	2	2.84077	3.91957	4.99837	0.0132196	0.00131369	0.0940535	0.0333932
chr5	6735909	6736009	2316060	0	+	0.44	(0.408,0.44]	chr5	224267	204	INTRON	INTRON	TENT4A	ENSG00000112941.14	ENST00000230859.8:ENST00000515721.1:ENST00000631941.2	protein_coding	protein_coding	protein_coding	protein_coding	1	45	2	2.84077	3.91957	4.99837	0.0132196	0.00131369	0.0940535	0.0333932
chr1	100422621	100422721	173331	0	+	0.36	(0.35,0.378]	chr1	18824	314	INTRON	INTRON	CDC14A	ENSG00000079335.20	ENST00000646665.1:ENST00000644844.1:ENST00000635056.2:ENST00000647005.1:ENST00000647203.1:ENST00000644676.1:ENST00000361544.11:ENST00000370124.8:ENST00000336454.5:ENST00000644813.1:ENST00000455467.6:ENST00000646563.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	81	2	2.18494	3.919555	5.65417	0.0047516	4.33402e-4	0.0635784	0.0190829
chr19	807993	808084	6992212	0	+	0.461538	(0.44,0.476]	chr19	692263	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PTBP1	ENSG00000011304.22	ENST00000635647.1:ENST00000627714.2:ENST00000676227.1:ENST00000677277.1:ENST00000349038.8:ENST00000586944.5:ENST00000356948.11:ENST00000394601.8:ENST00000587191.3:ENST00000679114.1:ENST00000350092.8:ENST00000585535.2:ENST00000621737.4:ENST00000585956.5:ENST00000585932.5:ENST00000585856.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	220	2	2.63059	3.9195	5.20841	8.18387e-5	9.24864e-8	0.00758404	1.34041e-4
chrX	71543866	71543966	7680055	0	+	0.49	(0.476,0.515]	chrX	786397	54	INTRON	INTRON	OGT	ENSG00000147162.14	ENST00000373719.8:ENST00000488174.5:ENST00000373701.7:ENST00000498566.3:ENST00000444774.3:ENST00000455587.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	146	2	3.30022	3.919485	4.53875	3.42965e-5	6.10545e-6	0.0046762	0.00185549
chr1	3984350	3984450	3688	0	+	0.44	(0.408,0.44]	chr1	772	68	INTRON	INTRON	LINC02780	ENSG00000284668.2	ENST00000642026.2:ENST00000641078.1:ENST00000641562.1	lncRNA	lncRNA	lncRNA	lncRNA	0	20	2	3.83494	3.9193949999999997	4.00385	0.0454568	0.0411442	0.161534	0.149888
chr1	16249588	16249686	381577	0	-	0.418367	(0.408,0.44]	chr1	44836	29	UTR3	UTR3:EXON_MRNA	FBXO42	ENSG00000037637.11	ENST00000375592.8	protein_coding	protein_coding	protein_coding	protein_coding	0	20	2	3.83494	3.9193949999999997	4.00385	0.0454568	0.0411442	0.161534	0.149888
chr1	37965160	37965259	426273	0	-	0.414141	(0.408,0.44]	chr1	51674	46	INTRON	INTRON	SF3A3	ENSG00000183431.12	ENST00000373019.5	protein_coding	protein_coding	protein_coding	protein_coding	0	20	2	3.83494	3.9193949999999997	4.00385	0.0454568	0.0411442	0.161534	0.149888
chr1	77873000	77873060	148496	0	+	0.416667	(0.408,0.44]	chr1	16551	1	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	MIGA1	ENSG00000180488.16	ENST00000443751.3:ENST00000643390.1:ENST00000643143.1:ENST00000642959.1:ENST00000370791.8:ENST00000646892.1:ENST00000645526.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	20	2	3.83494	3.9193949999999997	4.00385	0.0454568	0.0411442	0.161534	0.149888
chr10	7359426	7359526	4552418	0	-	0.44	(0.408,0.44]	chr10	420235	107	INTRON	INTRON	SFMBT2	ENSG00000198879.13	ENST00000397167.6:ENST00000361972.8:ENST00000684547.1:ENST00000683762.1:ENST00000673876.1:ENST00000682896.1:ENST00000379713.8:ENST00000682101.1:ENST00000379711.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	20	2	3.83494	3.9193949999999997	4.00385	0.0454568	0.0411442	0.161534	0.149888
chr10	30348556	30348656	4587640	0	-	0.41	(0.408,0.44]	chr10	422991	3	SS5_PROX	SS5_PROX:INTRON	MTPAP	ENSG00000107951.15	ENST00000263063.9:ENST00000488290.5:ENST00000417581.1:ENST00000421701.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	20	2	3.83494	3.9193949999999997	4.00385	0.0454568	0.0411442	0.161534	0.149888
chr10	92858715	92858814	4491718	0	+	0.424242	(0.408,0.44]	chr10	413705	97	INTRON	INTRON	EXOC6	ENSG00000138190.17	ENST00000671701.1:ENST00000672817.1:ENST00000371552.8:ENST00000443748.6:ENST00000371543.5:ENST00000260762.10	protein_coding	protein_coding	protein_coding	protein_coding	0	20	2	3.83494	3.9193949999999997	4.00385	0.0454568	0.0411442	0.161534	0.149888
chr11	48039703	48039803	4789810	0	+	0.44	(0.408,0.44]	chr11	443265	583	INTRON	INTRON	PTPRJ	ENSG00000149177.14	ENST00000418331.7:ENST00000440289.6:ENST00000527952.1:ENST00000534219.5	protein_coding	protein_coding	protein_coding	protein_coding	0	20	2	3.83494	3.9193949999999997	4.00385	0.0454568	0.0411442	0.161534	0.149888
chr11	63956927	63957025	4801810	0	+	0.428571	(0.408,0.44]	chr11	445179	26	UTR3	UTR3:EXON_MRNA	NAA40	ENSG00000110583.13	ENST00000338447.10:ENST00000377793.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	20	2	3.83494	3.9193949999999997	4.00385	0.0454568	0.0411442	0.161534	0.149888
chr12	112426511	112426611	5229874	0	+	0.44	(0.408,0.44]	chr12	495837	70	INTRON	INTRON	PTPN11	ENSG00000179295.19	ENST00000688597.1:ENST00000692624.1:ENST00000685487.1:ENST00000690210.1:ENST00000639857.2:ENST00000392597.5:ENST00000687906.1:ENST00000351677.7:ENST00000635625.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	20	2	3.83494	3.9193949999999997	4.00385	0.0454568	0.0411442	0.161534	0.149888
chr14	94088473	94088543	5808172	0	+	0.428571	(0.408,0.44]	chr14	550562	2	SS5_PROX	SS5_PROX:INTRON	IFI27L1	ENSG00000165948.11	ENST00000553350.5:ENST00000555523.6:ENST00000557600.5:ENST00000393115.7:ENST00000556381.5:ENST00000554166.5:ENST00000555065.5:ENST00000553664.1:ENST00000555341.5:ENST00000557218.5:ENST00000554544.5:ENST00000557066.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	20	2	3.83494	3.9193949999999997	4.00385	0.0454568	0.0411442	0.161534	0.149888
chr15	67186519	67186590	6053073	0	+	0.43662	(0.408,0.44]	chr15	576331	1	SS3_PROX	SS3_PROX:INTRON	SMAD3	ENSG00000166949.17	ENST00000327367.9:ENST00000679624.1:ENST00000540846.6:ENST00000558894.5:ENST00000439724.7:ENST00000681239.1:ENST00000537194.6:ENST00000560402.1:ENST00000680689.1:ENST00000560424.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	20	2	3.83494	3.9193949999999997	4.00385	0.0454568	0.0411442	0.161534	0.149888
chr16	66724561	66724661	6501951	0	-	0.42	(0.408,0.44]	chr16	628980	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	DYNC1LI2	ENSG00000135720.13	ENST00000258198.7:ENST00000443351.6:ENST00000563628.6:ENST00000569320.5:ENST00000567499.5:ENST00000564559.6:ENST00000568453.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	20	2	3.83494	3.9193949999999997	4.00385	0.0454568	0.0411442	0.161534	0.149888
chr16	67776279	67776379	6505380	0	-	0.44	(0.408,0.44]	chr16	629654	38	INTRON	INTRON	RANBP10	ENSG00000141084.12	ENST00000317506.8:ENST00000448631.6:ENST00000602506.5:ENST00000602677.5:ENST00000602525.5:ENST00000602638.5:ENST00000602815.5:ENST00000602887.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	20	2	3.83494	3.9193949999999997	4.00385	0.0454568	0.0411442	0.161534	0.149888
chr17	4883498	4883589	6550019	0	+	0.428571	(0.408,0.44]	chr17	635601	3	INTRON	INTRON	MINK1	ENSG00000141503.17	ENST00000355280.11:ENST00000572330.5:ENST00000347992.11:ENST00000574453.5:ENST00000453408.7:ENST00000664602.1:ENST00000577021.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	20	2	3.83494	3.9193949999999997	4.00385	0.0454568	0.0411442	0.161534	0.149888
chr17	17253964	17254062	6736156	0	-	0.428571	(0.408,0.44]	chr17	660954	46	INTRON	INTRON	COPS3	ENSG00000141030.13	ENST00000268717.10:ENST00000539941.6:ENST00000578317.5:ENST00000439936.6:ENST00000463097.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	20	2	3.83494	3.9193949999999997	4.00385	0.0454568	0.0411442	0.161534	0.149888
chr17	32542239	32542339	6753725	0	-	0.44	(0.408,0.44]	chr17	663912	453	INTRON	INTRON	MYO1D	ENSG00000176658.17	ENST00000318217.10:ENST00000394649.8:ENST00000577352.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	20	2	3.83494	3.9193949999999997	4.00385	0.0454568	0.0411442	0.161534	0.149888
chr17	75386789	75386889	6837609	0	-	0.43	(0.408,0.44]	chr17	675716	536	INTRON	INTRON	GRB2	ENSG00000177885.15	ENST00000316615.9:ENST00000316804.10:ENST00000392562.5:ENST00000392564.5:ENST00000392563.5:ENST00000648046.1:ENST00000578961.5:ENST00000582582.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	20	2	3.83494	3.9193949999999997	4.00385	0.0454568	0.0411442	0.161534	0.149888
chr17	82898664	82898763	6695701	0	+	0.424242	(0.408,0.44]	chr17	654985	23	INTRON	INTRON	TBCD	ENSG00000141556.22	ENST00000682479.1:ENST00000682722.1:ENST00000684464.1:ENST00000684544.1:ENST00000681983.1:ENST00000684361.1:ENST00000683184.1:ENST00000683282.1:ENST00000684408.1:ENST00000355528.9:ENST00000683444.1:ENST00000684776.1:ENST00000683041.1:ENST00000684760.1:ENST00000684349.1:ENST00000682213.1:ENST00000683009.1:ENST00000682921.1:ENST00000539345.6:ENST00000684000.1:ENST00000684188.1:ENST00000684429.1:ENST00000682610.1:ENST00000683821.1:ENST00000682654.1:ENST00000576160.6:ENST00000571712.5:ENST00000576996.5:ENST00000574801.5:ENST00000683584.1:ENST00000682099.1:ENST00000684559.1:ENST00000571316.5:ENST00000576760.5:ENST00000572984.5:ENST00000683839.1:ENST00000574975.5:ENST00000572953.5:ENST00000571796.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	20	2	3.83494	3.9193949999999997	4.00385	0.0454568	0.0411442	0.161534	0.149888
chr19	319338	319438	7109349	0	-	0.41	(0.408,0.44]	chr19	713786	53	INTRON	INTRON	MIER2	ENSG00000105556.12	ENST00000264819.7	protein_coding	protein_coding	protein_coding	protein_coding	0	20	2	3.83494	3.9193949999999997	4.00385	0.0454568	0.0411442	0.161534	0.149888
chr19	17210952	17211049	7029352	0	+	0.43299	(0.408,0.44]	chr19	699789	1	SS5_PROX	SS5_PROX:INTRON	MYO9B	ENSG00000099331.14	ENST00000682292.1:ENST00000595618.5:ENST00000594824.5:ENST00000397274.6:ENST00000595641.5:ENST00000596942.5:ENST00000597073.5:ENST00000598419.1:ENST00000597572.1:ENST00000597881.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	20	2	3.83494	3.9193949999999997	4.00385	0.0454568	0.0411442	0.161534	0.149888
chr19	38658947	38659047	7065841	0	+	0.44	(0.408,0.44]	chr19	705486	103	INTRON	INTRON	ACTN4	ENSG00000130402.13	ENST00000252699.7:ENST00000588618.5:ENST00000440400.2:ENST00000424234.7:ENST00000589528.1:ENST00000390009.7:ENST00000495553.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	20	2	3.83494	3.9193949999999997	4.00385	0.0454568	0.0411442	0.161534	0.149888
chr2	24013810	24013910	707775	0	+	0.42	(0.408,0.44]	chr2	81987	4	SS5_PROX	SS5_PROX:INTRON	MFSD2B	ENSG00000205639.12	ENST00000669179.1:ENST00000406420.7:ENST00000338315.6:ENST00000495018.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	20	2	3.83494	3.9193949999999997	4.00385	0.0454568	0.0411442	0.161534	0.149888
chr2	43584412	43584511	1109309	0	-	0.434343	(0.408,0.44]	chr2	118876	21	INTRON	INTRON	THADA	ENSG00000115970.19	ENST00000405975.7:ENST00000398653.5:ENST00000405006.8:ENST00000408045.7:ENST00000402360.6:ENST00000404790.5:ENST00000474159.6:ENST00000403856.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	20	2	3.83494	3.9193949999999997	4.00385	0.0454568	0.0411442	0.161534	0.149888
chr2	61361253	61361353	1129448	0	-	0.42	(0.408,0.44]	chr2	121448	102	INTRON	INTRON	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000453133.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	20	2	3.83494	3.9193949999999997	4.00385	0.0454568	0.0411442	0.161534	0.149888
chr2	95113092	95113190	1177531	0	-	0.418367	(0.408,0.44]	chr2	125649	27	INTRON	INTRON	MRPS5	ENSG00000289685.1	ENST00000272418.7:ENST00000345084.10:ENST00000695437.1:ENST00000695436.1:ENST00000695435.1:ENST00000695434.1:ENST00000695433.1:ENST00000695432.1:ENST00000695439.1:ENST00000461916.6:ENST00000475895.6:ENST00000695440.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	20	2	3.83494	3.9193949999999997	4.00385	0.0454568	0.0411442	0.161534	0.149888
chr2	101771522	101771622	836797	0	+	0.41	(0.408,0.44]	chr2	93900	726	INTRON	INTRON	MAP4K4	ENSG00000071054.17	ENST00000427603.5:ENST00000324219.9:ENST00000350878.9:ENST00000425019.6:ENST00000625522.3:ENST00000413150.6:ENST00000634702.1:ENST00000456652.5:ENST00000347699.8:ENST00000417294.5	protein_coding	protein_coding	protein_coding	protein_coding	0	20	2	3.83494	3.9193949999999997	4.00385	0.0454568	0.0411442	0.161534	0.149888
chr2	173100679	173100779	920697	0	+	0.41	(0.408,0.44]	chr2	101411	91	INTRON	INTRON	MAP3K20	ENSG00000091436.17	ENST00000539448.5:ENST00000409176.6:ENST00000468408.5:ENST00000338983.7:ENST00000375213.8:ENST00000476618.5:ENST00000422149.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	20	2	3.83494	3.9193949999999997	4.00385	0.0454568	0.0411442	0.161534	0.149888
chr2	190194799	190194899	957237	0	+	0.42	(0.408,0.44]	chr2	103926	130	INTRON	INTRON	C2orf88	ENSG00000187699.10	ENST00000490033.5:ENST00000450357.5:ENST00000396974.2:ENST00000409545.2:ENST00000409870.1:ENST00000340623.4:ENST00000443551.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	20	2	3.83494	3.9193949999999997	4.00385	0.0454568	0.0411442	0.161534	0.149888
chr20	32840653	32840753	7257377	0	+	0.41	(0.408,0.44]	chr20	737275	4	INTRON	INTRON	MAPRE1	ENSG00000101367.9	ENST00000375571.6	protein_coding	protein_coding	protein_coding	protein_coding	0	20	2	3.83494	3.9193949999999997	4.00385	0.0454568	0.0411442	0.161534	0.149888
chr21	46515390	46515489	7423073	0	+	0.434343	(0.408,0.44]	chr21	757010	34	INTRON	INTRON	DIP2A	ENSG00000160305.18	ENST00000417564.3:ENST00000651436.1:ENST00000400274.5:ENST00000457905.7:ENST00000466639.5:ENST00000435722.7:ENST00000473752.5:ENST00000494435.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	20	2	3.83494	3.9193949999999997	4.00385	0.0454568	0.0411442	0.161534	0.149888
chr22	26553028	26553127	7564695	0	-	0.424242	(0.408,0.44]	chr22	774044	25	INTRON	INTRON	TPST2	ENSG00000128294.16	ENST00000338754.9:ENST00000403880.5:ENST00000398110.6:ENST00000442495.5:ENST00000440953.5:ENST00000453117.1:ENST00000450022.1	protein_coding	protein_coding	protein_coding	protein_coding	0	20	2	3.83494	3.9193949999999997	4.00385	0.0454568	0.0411442	0.161534	0.149888
chr3	122450237	122450336	1800960	0	-	0.414141	(0.408,0.44]	chr3	180977	1	INTRON	INTRON	KPNA1	ENSG00000114030.13	ENST00000344337.11:ENST00000470904.5:ENST00000466923.5:ENST00000485027.5:ENST00000494339.5:ENST00000465882.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	20	2	3.83494	3.9193949999999997	4.00385	0.0454568	0.0411442	0.161534	0.149888
chr3	184989386	184989486	1584594	0	+	0.41	(0.408,0.44]	chr3	164069	59	INTRON	INTRON	VPS8	ENSG00000156931.16	ENST00000287546.8:ENST00000625842.3:ENST00000436792.6:ENST00000446204.6:ENST00000492449.5:ENST00000488255.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	20	2	3.83494	3.9193949999999997	4.00385	0.0454568	0.0411442	0.161534	0.149888
chr5	6662897	6662966	2315716	0	+	0.42029	(0.408,0.44]	chr5	224253	2	CDS	CDS:UTR3:EXON_MRNA	SRD5A1	ENSG00000145545.12	ENST00000513117.1:ENST00000510531.5:ENST00000274192.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	20	2	3.83494	3.9193949999999997	4.00385	0.0454568	0.0411442	0.161534	0.149888
chr5	7871929	7872029	2316705	0	+	0.41	(0.408,0.44]	chr5	224396	3	SS3_PROX	SS3_PROX:INTRON	MTRR	ENSG00000124275.15	ENST00000502509.5:ENST00000264668.6:ENST00000513439.5:ENST00000511461.5:ENST00000440940.7:ENST00000514220.5:ENST00000510279.5:ENST00000508047.5:ENST00000503550.5:ENST00000514369.5:ENST00000502550.5:ENST00000512217.5:ENST00000510525.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	20	2	3.83494	3.9193949999999997	4.00385	0.0454568	0.0411442	0.161534	0.149888
chr5	82145690	82145790	2404443	0	+	0.42	(0.408,0.44]	chr5	232128	339	INTRON	INTRON	ATG10	ENSG00000152348.16	ENST00000282185.8:ENST00000355178.8:ENST00000458350.7:ENST00000513443.5:ENST00000504770.5:ENST00000513634.1:ENST00000508814.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	20	2	3.83494	3.9193949999999997	4.00385	0.0454568	0.0411442	0.161534	0.149888
chr6	8017486	8017586	3054082	0	-	0.43	(0.408,0.44]	chr6	284064	3	SS5_PROX	SS5_PROX:INTRON	BLOC1S5	ENSG00000188428.20	ENST00000397457.7:ENST00000244777.6:ENST00000627748.2:ENST00000475998.1:ENST00000486432.1:ENST00000543936.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	20	2	3.83494	3.9193949999999997	4.00385	0.0454568	0.0411442	0.161534	0.149888
chr6	31799801	31799900	3079862	0	-	0.414141	(0.408,0.44]	chr6	287264	9	INTRON	INTRON	LSM2	ENSG00000204392.11	ENST00000375661.6:ENST00000477182.5:ENST00000470086.5:ENST00000470083.5:ENST00000493387.5:ENST00000491421.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	20	2	3.83494	3.9193949999999997	4.00385	0.0454568	0.0411442	0.161534	0.149888
chr6	99431376	99431471	2917662	0	+	0.431579	(0.408,0.44]	chr6	275813	8	EXON_LNCRNA	EXON_LNCRNA	ENSG00000228506	ENSG00000228506.3	ENST00000418945.3	lncRNA	lncRNA	lncRNA	lncRNA	0	20	2	3.83494	3.9193949999999997	4.00385	0.0454568	0.0411442	0.161534	0.149888
chr6	154409543	154409642	3250068	0	-	0.434343	(0.408,0.44]	chr6	302003	25	INTRON	INTRON	CNKSR3	ENSG00000153721.19	ENST00000607772.6:ENST00000433165.6:ENST00000479339.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	20	2	3.83494	3.9193949999999997	4.00385	0.0454568	0.0411442	0.161534	0.149888
chr7	128496737	128496836	3407277	0	+	0.434343	(0.408,0.44]	chr7	318309	24	INTRON	INTRON	METTL2B	ENSG00000165055.16	ENST00000482555.5:ENST00000262432.13:ENST00000497665.5:ENST00000480046.5:ENST00000481392.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	20	2	3.83494	3.9193949999999997	4.00385	0.0454568	0.0411442	0.161534	0.149888
chr8	96789625	96789725	3805444	0	+	0.42	(0.408,0.44]	chr8	352776	39	INTRON	INTRON	CPQ	ENSG00000104324.16	ENST00000220763.10:ENST00000517742.1	protein_coding	protein_coding	protein_coding	protein_coding	0	20	2	3.83494	3.9193949999999997	4.00385	0.0454568	0.0411442	0.161534	0.149888
chr8	140583819	140583918	4076047	0	-	0.414141	(0.408,0.44]	chr8	370274	105	INTRON	INTRON	AGO2	ENSG00000123908.12	ENST00000220592.10:ENST00000519980.5:ENST00000523609.5:ENST00000517293.5:ENST00000524328.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	20	2	3.83494	3.9193949999999997	4.00385	0.0454568	0.0411442	0.161534	0.149888
chr9	132043763	132043863	4365833	0	-	0.42	(0.408,0.44]	chr9	401341	112	INTRON	INTRON	MED27	ENSG00000160563.14	ENST00000651950.1:ENST00000357028.6:ENST00000292035.10:ENST00000651555.1:ENST00000650776.1:ENST00000444872.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	20	2	3.83494	3.9193949999999997	4.00385	0.0454568	0.0411442	0.161534	0.149888
chrX	53609109	53609209	7821100	0	-	0.44	(0.408,0.44]	chrX	798121	2	SS3_PROX	SS3_PROX:INTRON	HUWE1	ENSG00000086758.16	ENST00000262854.11:ENST00000342160.7:ENST00000612484.4:ENST00000218328.12	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	20	2	3.83494	3.9193949999999997	4.00385	0.0454568	0.0411442	0.161534	0.149888
chr6	13950504	13950604	2822435	0	+	0.46	(0.44,0.476]	chr6	265130	248	INTRON	INTRON	RNF182	ENSG00000180537.13	ENST00000537663.5:ENST00000488763.5:ENST00000544682.5:ENST00000420478.2:ENST00000488300.6:ENST00000471906.1:ENST00000537388.1:ENST00000423553.6	protein_coding	protein_coding	protein_coding	protein_coding	3	67	2	2.22103	3.9192649999999998	5.6175	0.00776319	2.84938e-4	0.0787356	0.015495
chrX	130408956	130409056	7722670	0	+	0.31	(0.28,0.32]	chrX	789988	3	SS3_PROX	SS3_PROX:INTRON	RBMX2	ENSG00000134597.17	ENST00000305536.11:ENST00000469953.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	65	2	2.63379	3.919195	5.2046	0.00503861	0.00448664	0.0646039	0.0593175
chr16	88876301	88876397	6540275	0	-	0.541667	(0.515,0.57]	chr16	634026	16	UTR3	UTR3:EXON_MRNA	CBFA2T3	ENSG00000129993.15	ENST00000268679.9:ENST00000327483.9:ENST00000563856.1:ENST00000563920.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	54	2	2.58624	3.919035	5.25183	0.00526399	2.6074e-4	0.0633874	0.014326
chr1	77670794	77670893	493345	0	-	0.373737	(0.35,0.378]	chr1	58315	288	INTRON	INTRON	ZZZ3	ENSG00000036549.13	ENST00000370801.8:ENST00000370798.5:ENST00000433749.5:ENST00000414381.5:ENST00000463166.5:ENST00000469944.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	48	2	2.47065	3.91869	5.3667299999999996	0.0386172	3.99274e-4	0.142656	0.0179401
chr6	13645921	13646020	3058562	0	-	0.222222	[0,0.28]	chr6	284524	8	INTRON	INTRON	RANBP9	ENSG00000010017.13	ENST00000011619.6	protein_coding	protein_coding	protein_coding	protein_coding	1	57	2	2.44242	3.918685	5.39495	0.0491024	0.00133175	0.155269	0.0335129
chr20	50599593	50599692	7354507	0	-	0.393939	(0.378,0.408]	chr20	750001	15	INTRON	INTRON	RIPOR3	ENSG00000042062.13	ENST00000327979.8:ENST00000045083.6:ENST00000462493.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	283	2	3.2549	3.9186550000000002	4.58241	2.29138e-6	1.76182e-7	9.48688e-4	2.06704e-4
chr1	241857044	241857144	344464	0	+	0.26	[0,0.28]	chr1	40110	3	SS3_PROX	SS3_PROX:INTRON	EXO1	ENSG00000174371.17	ENST00000366548.8:ENST00000423131.5:ENST00000348581.9:ENST00000518483.5:ENST00000437497.5:ENST00000493702.5:ENST00000469419.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	57	2	2.68918	3.918475	5.14777	0.0275571	0.00311898	0.123904	0.0512673
chr10	50565276	50565376	4620103	0	-	0.28	[0,0.28]	chr10	425452	450	INTRON	INTRON	SGMS1	ENSG00000198964.14	ENST00000429490.5:ENST00000361781.7:ENST00000619438.4:ENST00000609445.5:ENST00000608287.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	57	2	2.68918	3.918475	5.14777	0.0275571	0.00311898	0.123904	0.0512673
chr5	66156660	66156758	2372614	0	+	0.255102	[0,0.28]	chr5	228659	7	UTR3	UTR3:EXON_MRNA:INTRON	SREK1	ENSG00000153914.16	ENST00000521691.5:ENST00000612404.4:ENST00000334121.11:ENST00000520953.5:ENST00000522912.5:ENST00000524111.5:ENST00000380918.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	57	2	2.68918	3.918475	5.14777	0.0275571	0.00311898	0.123904	0.0512673
chr5	83114102	83114201	2407231	0	+	0.585859	(0.57,1]	chr5	232277	25	INTRON	INTRON	XRCC4	ENSG00000152422.16	ENST00000282268.7:ENST00000338635.10:ENST00000396027.9:ENST00000542685.5:ENST00000511817.1:ENST00000509268.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	28	2	3.13254	3.918405	4.70427	0.00310655	9.25341e-4	0.0512344	0.0278396
chr21	15741122	15741222	7370206	0	+	0.31	(0.28,0.32]	chr21	752186	103	INTRON	INTRON	USP25	ENSG00000155313.16	ENST00000400183.7:ENST00000285681.6:ENST00000285679.10:ENST00000351097.9	protein_coding	protein_coding	protein_coding	protein_coding	1	49	2	2.53522	3.9183749999999997	5.30153	0.0310424	0.00332518	0.143457	0.0512081
chr1	55152075	55152175	465253	0	-	0.34	(0.32,0.35]	chr1	56211	1	SS3_PROX	SS3_PROX:INTRON	USP24	ENSG00000162402.14	ENST00000294383.7:ENST00000634589.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	21	2	3.77344	3.918215	4.06299	0.0596635	0.0559439	0.189982	0.165463
chr1	96741947	96742047	168143	0	+	0.33	(0.32,0.35]	chr1	18215	180	INTRON	INTRON	PTBP2	ENSG00000117569.19	ENST00000482253.5:ENST00000675735.1:ENST00000609116.5:ENST00000674951.1:ENST00000675080.1:ENST00000426398.3:ENST00000460706.5:ENST00000370197.5:ENST00000370198.5:ENST00000476419.5:ENST00000676292.1:ENST00000676096.1:ENST00000675365.1:ENST00000674579.1:ENST00000675401.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	21	2	3.77344	3.918215	4.06299	0.0596635	0.0559439	0.189982	0.165463
chr1	113409753	113409853	188906	0	+	0.34	(0.32,0.35]	chr1	20964	54	INTRON	INTRON	MAGI3	ENSG00000081026.19	ENST00000307546.14:ENST00000369617.8:ENST00000369615.5:ENST00000369611.4:ENST00000486456.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	21	2	3.77344	3.918215	4.06299	0.0596635	0.0559439	0.189982	0.165463
chr1	154254740	154254835	227882	0	+	0.336842	(0.32,0.35]	chr1	26311	2	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	UBAP2L	ENSG00000143569.19	ENST00000343815.10:ENST00000271877.11:ENST00000613315.4:ENST00000428931.6:ENST00000361546.6:ENST00000495676.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	21	2	3.77344	3.918215	4.06299	0.0596635	0.0559439	0.189982	0.165463
chr1	212790530	212790630	634773	0	-	0.33	(0.32,0.35]	chr1	74974	25	INTRON	INTRON	NSL1	ENSG00000117697.15	ENST00000366977.8:ENST00000366978.5:ENST00000366976.3:ENST00000626725.1:ENST00000473995.5:ENST00000487995.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	21	2	3.77344	3.918215	4.06299	0.0596635	0.0559439	0.189982	0.165463
chr10	7397539	7397638	4552804	0	-	0.333333	(0.32,0.35]	chr10	420261	152	INTRON	INTRON	SFMBT2	ENSG00000198879.13	ENST00000397167.6:ENST00000361972.8:ENST00000684547.1:ENST00000683762.1:ENST00000673876.1:ENST00000682896.1:ENST00000379713.8:ENST00000682101.1:ENST00000379711.2:ENST00000682043.1:ENST00000682180.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	21	2	3.77344	3.918215	4.06299	0.0596635	0.0559439	0.189982	0.165463
chr12	49147632	49147729	5131537	0	+	0.329897	(0.32,0.35]	chr12	483830	1	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ENSG00000258017	ENSG00000258017.3	ENST00000656133.1:ENST00000665211.1:ENST00000547712.1:ENST00000664160.1:ENST00000551496.1:ENST00000667827.1:ENST00000687351.1	lncRNA	lncRNA	lncRNA	lncRNA	0	21	2	3.77344	3.918215	4.06299	0.0596635	0.0559439	0.189982	0.165463
chr14	45238021	45238121	5885147	0	-	0.35	(0.32,0.35]	chr14	558417	3	SS3_PROX	SS3_PROX:INTRON	MIS18BP1	ENSG00000129534.14	ENST00000310806.9:ENST00000454990.5:ENST00000453142.3:ENST00000627697.1:ENST00000494512.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	21	2	3.77344	3.918215	4.06299	0.0596635	0.0559439	0.189982	0.165463
chr14	73906767	73906866	5786860	0	+	0.323232	(0.32,0.35]	chr14	548217	13	INTRON	INTRON	ZNF410	ENSG00000119725.21	ENST00000540593.5:ENST00000555730.6:ENST00000324593.10:ENST00000556396.5:ENST00000555044.6:ENST00000412490.7:ENST00000541357.6:ENST00000398139.7:ENST00000442160.7:ENST00000334521.8:ENST00000615736.4:ENST00000554316.1:ENST00000557679.5:ENST00000555620.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	21	2	3.77344	3.918215	4.06299	0.0596635	0.0559439	0.189982	0.165463
chr14	103460841	103460937	5826400	0	+	0.322917	(0.32,0.35]	chr14	552867	17	INTRON	INTRON	MARK3	ENSG00000075413.19	ENST00000678179.1:ENST00000676838.1:ENST00000677348.1:ENST00000677404.1:ENST00000676694.1:ENST00000676938.1:ENST00000678619.1:ENST00000676897.1:ENST00000677214.1:ENST00000677942.1:ENST00000676830.1:ENST00000678999.1:ENST00000677228.1:ENST00000556744.2:ENST00000677104.1:ENST00000679330.1:ENST00000560417.6:ENST00000440884.7:ENST00000676475.1:ENST00000677035.1:ENST00000678022.1:ENST00000677560.1:ENST00000561314.6:ENST00000429436.7:ENST00000677118.1:ENST00000676564.1:ENST00000678169.1:ENST00000678175.1:ENST00000678897.1:ENST00000678278.1:ENST00000676645.1:ENST00000677829.1:ENST00000678302.1:ENST00000677133.1:ENST00000561164.2:ENST00000558223.6:ENST00000678207.1:ENST00000677360.1:ENST00000676905.1:ENST00000678343.1:ENST00000677347.1:ENST00000678071.1:ENST00000677432.1:ENST00000678237.1:ENST00000677604.1:ENST00000676518.1:ENST00000677051.1:ENST00000677857.1:ENST00000677869.1:ENST00000678423.1:ENST00000560603.6:ENST00000416682.6:ENST00000303622.13:ENST00000216288.11:ENST00000679105.1:ENST00000553942.5:ENST00000335102.9:ENST00000678091.1:ENST00000561071.5:ENST00000558698.5:ENST00000559268.5:ENST00000676745.1:ENST00000558611.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	21	2	3.77344	3.918215	4.06299	0.0596635	0.0559439	0.189982	0.165463
chr15	52562103	52562202	6177247	0	-	0.343434	(0.32,0.35]	chr15	588892	45	INTRON	INTRON	ARPP19	ENSG00000128989.11	ENST00000566423.5:ENST00000249822.9:ENST00000561650.5:ENST00000563277.5:ENST00000567669.5:ENST00000569723.5:ENST00000569281.6:ENST00000564163.5:ENST00000563566.5:ENST00000561971.1:ENST00000567830.1	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	3.77344	3.918215	4.06299	0.0596635	0.0559439	0.189982	0.165463
chr15	81752228	81752328	6242823	0	-	0.34	(0.32,0.35]	chr15	595853	897	INTRON	INTRON	ENSG00000259692	ENSG00000259692.6	ENST00000559428.2:ENST00000560054.6:ENST00000560097.1:ENST00000668584.1	lncRNA	lncRNA	lncRNA	lncRNA	0	21	2	3.77344	3.918215	4.06299	0.0596635	0.0559439	0.189982	0.165463
chr15	90269091	90269191	6098447	0	+	0.35	(0.32,0.35]	chr15	580504	23	INTRON	INTRON	NGRN	ENSG00000182768.9	ENST00000331497.3:ENST00000379095.5:ENST00000411845.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	21	2	3.77344	3.918215	4.06299	0.0596635	0.0559439	0.189982	0.165463
chr17	48093242	48093341	6790603	0	-	0.333333	(0.32,0.35]	chr17	669909	46	INTRON	INTRON	CBX1	ENSG00000108468.15	ENST00000393408.7:ENST00000225603.9:ENST00000581003.5:ENST00000402583.5:ENST00000495350.5:ENST00000444685.1	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	3.77344	3.918215	4.06299	0.0596635	0.0559439	0.189982	0.165463
chr19	56370420	56370517	7102426	0	+	0.329897	(0.32,0.35]	chr19	712694	7	INTRON	INTRON	ZNF542P	ENSG00000240225.10	ENST00000467807.5:ENST00000462524.5:ENST00000490123.5:ENST00000589844.5:ENST00000468396.5:ENST00000488113.5:ENST00000495307.5:ENST00000596094.5:ENST00000587341.5:ENST00000595222.5:ENST00000587208.5	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript	0	21	2	3.77344	3.918215	4.06299	0.0596635	0.0559439	0.189982	0.165463
chr2	24568419	24568519	710031	0	+	0.34	(0.32,0.35]	chr2	82218	36	INTRON	INTRON	NCOA1	ENSG00000084676.16	ENST00000348332.8:ENST00000496333.5:ENST00000406961.5:ENST00000469850.5:ENST00000405141.5:ENST00000407230.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	21	2	3.77344	3.918215	4.06299	0.0596635	0.0559439	0.189982	0.165463
chr2	28028706	28028805	721535	0	+	0.333333	(0.32,0.35]	chr2	83656	29	INTRON	INTRON	BABAM2	ENSG00000158019.21	ENST00000344773.6:ENST00000379624.6:ENST00000342045.6:ENST00000379632.6:ENST00000361704.6:ENST00000379629.7	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	3.77344	3.918215	4.06299	0.0596635	0.0559439	0.189982	0.165463
chr20	37042885	37042985	7339021	0	-	0.33	(0.32,0.35]	chr20	747862	22	INTRON	INTRON	RBL1	ENSG00000080839.12	ENST00000373664.8:ENST00000344359.7	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	3.77344	3.918215	4.06299	0.0596635	0.0559439	0.189982	0.165463
chr22	40956312	40956411	7521311	0	+	0.343434	(0.32,0.35]	chr22	768492	23	INTRON	INTRON	RBX1	ENSG00000100387.9	ENST00000476110.1:ENST00000216225.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	21	2	3.77344	3.918215	4.06299	0.0596635	0.0559439	0.189982	0.165463
chr3	52647351	52647450	1700379	0	-	0.333333	(0.32,0.35]	chr3	175011	22	INTRON	INTRON	PBRM1	ENSG00000163939.18	ENST00000356770.8:ENST00000394830.7:ENST00000337303.8:ENST00000412587.5:ENST00000296302.11:ENST00000409057.5:ENST00000410007.5:ENST00000409114.7:ENST00000409767.5:ENST00000423351.5:ENST00000446103.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	21	2	3.77344	3.918215	4.06299	0.0596635	0.0559439	0.189982	0.165463
chr4	38996170	38996269	2128060	0	-	0.333333	(0.32,0.35]	chr4	209708	18	INTRON	INTRON	TMEM156	ENSG00000121895.8	ENST00000381938.4:ENST00000344606.6	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	3.77344	3.918215	4.06299	0.0596635	0.0559439	0.189982	0.165463
chr5	81975692	81975792	2402735	0	+	0.33	(0.32,0.35]	chr5	232101	1	SS3_PROX	SS3_PROX:INTRON	ATG10	ENSG00000152348.16	ENST00000282185.8:ENST00000355178.8:ENST00000510085.1:ENST00000458350.7:ENST00000513443.5:ENST00000504770.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	21	2	3.77344	3.918215	4.06299	0.0596635	0.0559439	0.189982	0.165463
chr5	126972251	126972351	2713975	0	-	0.33	(0.32,0.35]	chr5	255278	255	INTRON	INTRON	MARCHF3	ENSG00000173926.6	ENST00000308660.6:ENST00000502289.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	21	2	3.77344	3.918215	4.06299	0.0596635	0.0559439	0.189982	0.165463
chr6	34308478	34308578	3083931	0	-	0.33	(0.32,0.35]	chr6	288627	124	INTRON	INTRON	NUDT3:RPS10-NUDT3	ENSG00000272325.2:ENSG00000270800.3	ENST00000607016.2:ENST00000639725.1:ENST00000639877.1:ENST00000605528.2	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	3.77344	3.918215	4.06299	0.0596635	0.0559439	0.189982	0.165463
chr6	125799386	125799486	2954457	0	+	0.34	(0.32,0.35]	chr6	277835	22	INTRON	INTRON	NCOA7	ENSG00000111912.20	ENST00000368357.7:ENST00000417494.5:ENST00000453302.5:ENST00000392477.7:ENST00000229634.13	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	3.77344	3.918215	4.06299	0.0596635	0.0559439	0.189982	0.165463
chr7	111321385	111321485	3621696	0	-	0.35	(0.32,0.35]	chr7	337093	3575	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	21	2	3.77344	3.918215	4.06299	0.0596635	0.0559439	0.189982	0.165463
chr9	5705574	5705674	4098070	0	+	0.35	(0.32,0.35]	chr9	373384	152	INTRON	INTRON	RIC1	ENSG00000107036.12	ENST00000251879.10:ENST00000414202.7:ENST00000418622.7:ENST00000545641.5	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	3.77344	3.918215	4.06299	0.0596635	0.0559439	0.189982	0.165463
chr9	95424430	95424530	4293120	0	-	0.34	(0.32,0.35]	chr9	394807	79	INTRON	INTRON	FANCC	ENSG00000158169.14	ENST00000636777.1:ENST00000433644.2	protein_coding	processed_transcript	protein_coding	processed_transcript	0	21	2	3.77344	3.918215	4.06299	0.0596635	0.0559439	0.189982	0.165463
chr9	137561759	137561858	4377445	0	-	0.343434	(0.32,0.35]	chr9	403627	46	INTRON	INTRON	DPH7	ENSG00000148399.13	ENST00000277540.7:ENST00000479650.5:ENST00000467243.5:ENST00000497237.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	21	2	3.77344	3.918215	4.06299	0.0596635	0.0559439	0.189982	0.165463
chrX	14853102	14853167	7766288	0	-	0.323077	(0.32,0.35]	chrX	793687	2	CDS	CDS:UTR3:EXON_MRNA	FANCB	ENSG00000181544.16	ENST00000696351.1:ENST00000696352.1:ENST00000696353.1:ENST00000696354.1:ENST00000696322.1:ENST00000452869.2:ENST00000696311.1:ENST00000643728.2:ENST00000696355.1:ENST00000696312.1:ENST00000696356.1:ENST00000650831.1:ENST00000646255.1:ENST00000324138.7:ENST00000696357.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	21	2	3.77344	3.918215	4.06299	0.0596635	0.0559439	0.189982	0.165463
chr17	62007907	62008004	6810296	0	-	0.597938	(0.57,1]	chr17	672913	5	INTRON	INTRON	MED13	ENSG00000108510.10	ENST00000397786.7	protein_coding	protein_coding	protein_coding	protein_coding	3	44	2	2.32017	3.918195	5.51622	0.00488159	1.33983e-5	0.0640618	0.00288846
chr5	32167551	32167651	2597448	0	-	0.26	[0,0.28]	chr5	246744	233	INTRON	INTRON	GOLPH3	ENSG00000113384.14	ENST00000265070.7:ENST00000503610.5:ENST00000512668.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	110	2	2.06997	3.918025	5.76608	0.0061777	0.00140074	0.0713552	0.0340865
chr1	35608349	35608448	421983	0	-	0.313131	(0.28,0.32]	chr1	50853	27	INTRON	INTRON	PSMB2	ENSG00000126067.12	ENST00000373237.4:ENST00000621781.4:ENST00000630477.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	54	2	3.00395	3.9177999999999997	4.83165	0.0101329	0.00527257	0.0850389	0.0656295
chr13	24895250	24895349	5563399	0	-	0.575758	(0.57,1]	chr13	531735	20	INTRON	INTRON	CENPJ	ENSG00000151849.16	ENST00000381884.9:ENST00000616936.4:ENST00000545981.6:ENST00000418179.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	81	2	3.63336	3.9177350000000004	4.20211	9.40529e-6	1.24433e-6	0.00236268	6.49169e-4
chr1	27469500	27469600	406558	0	-	0.35	(0.32,0.35]	chr1	48986	402	INTRON	INTRON	WASF2	ENSG00000158195.11	ENST00000618852.5:ENST00000536657.1	protein_coding	protein_coding	protein_coding	protein_coding	2	67	2	2.2664	3.917735	5.56907	0.0199969	2.27532e-4	0.109608	0.0133228
chr11	17854019	17854119	4929745	0	-	0.34	(0.32,0.35]	chr11	461521	69	INTRON	INTRON	SERGEF	ENSG00000129158.11	ENST00000265965.10:ENST00000525422.5:ENST00000527494.5:ENST00000528369.5:ENST00000531926.5:ENST00000531299.5:ENST00000528200.5:ENST00000529440.5:ENST00000524589.5:ENST00000529151.5:ENST00000532546.5:ENST00000525920.5:ENST00000532265.5:ENST00000533241.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	67	2	2.2664	3.917735	5.56907	0.0199969	2.27532e-4	0.109608	0.0133228
chr16	84734986	84735085	6410261	0	+	0.343434	(0.32,0.35]	chr16	615290	11	INTRON	INTRON	USP10	ENSG00000103194.16	ENST00000562743.5:ENST00000540269.6:ENST00000563892.5:ENST00000562092.1:ENST00000219473.12:ENST00000570191.5:ENST00000563048.5:ENST00000562283.5:ENST00000563386.5:ENST00000569038.5:ENST00000570053.1:ENST00000566512.1:ENST00000563023.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	67	2	2.2664	3.917735	5.56907	0.0199969	2.27532e-4	0.109608	0.0133228
chr1	223987220	223987301	643751	0	-	0.432099	(0.408,0.44]	chr1	76025	2	INTRON	INTRON	GTF2IP20	ENSG00000272645.4	ENST00000634905.2:ENST00000431663.1:ENST00000685304.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	2	62	2	2.64944	3.9173999999999998	5.18536	0.00481947	6.17381e-4	0.060277	0.0223951
chr1	93218502	93218577	163567	0	+	0.48	(0.476,0.515]	chr1	17738	1	UTR3	UTR3:EXON_MRNA:INTRON	CCDC18	ENSG00000122483.18	ENST00000343253.11:ENST00000401026.7:ENST00000690592.1:ENST00000370276.6:ENST00000690025.1:ENST00000692873.1:ENST00000455267.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	60	2	2.54157	3.91719	5.29281	0.00697457	4.07635e-4	0.0718189	0.0181306
chr6	107898231	107898328	3182230	0	-	0.391753	(0.378,0.408]	chr6	296394	1	INTRON	INTRON	SEC63	ENSG00000025796.14	ENST00000369002.9:ENST00000466419.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	43	2	3.17089	3.917135	4.66338	0.0103469	0.00357279	0.0850389	0.0548435
chr7	73180997	73181097	3331272	0	+	0.38	(0.378,0.408]	chr7	309753	4	SS5_PROX	SS5_PROX:INTRON	GTF2IP4	ENSG00000233369.7	ENST00000544802.5:ENST00000453092.3	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript:transcribed_processed_pseudogene	1	43	2	3.17089	3.917135	4.66338	0.0103469	0.00357279	0.0850389	0.0548435
chr8	94865084	94865164	3800555	0	+	0.4	(0.378,0.408]	chr8	352421	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	INTS8	ENSG00000164941.14	ENST00000523731.6:ENST00000524333.5:ENST00000343161.8:ENST00000523206.5:ENST00000520526.5:ENST00000520845.5:ENST00000520315.5:ENST00000517918.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	43	2	3.17089	3.917135	4.66338	0.0103469	0.00357279	0.0850389	0.0548435
chr5	154862025	154862122	2527710	0	+	0.381443	(0.378,0.408]	chr5	241732	18	INTRON	INTRON	CNOT8	ENSG00000155508.14	ENST00000521174.5:ENST00000523698.5:ENST00000517876.5:ENST00000520472.5:ENST00000519211.5:ENST00000522458.5:ENST00000403027.6:ENST00000521450.5:ENST00000519903.5:ENST00000517568.5:ENST00000524105.5:ENST00000519430.5:ENST00000285896.11:ENST00000521583.5:ENST00000520671.5:ENST00000518028.5:ENST00000519404.5:ENST00000521729.5:ENST00000519394.5:ENST00000518775.5:ENST00000522644.5:ENST00000521402.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	57	2	2.41037	3.916975	5.42358	0.0100185	8.39231e-4	0.0880217	0.0266487
chr2	10336884	10336984	691970	0	+	0.46	(0.44,0.476]	chr2	81133	63	INTRON	INTRON	HPCAL1	ENSG00000115756.13	ENST00000423674.5:ENST00000307845.8:ENST00000381765.7:ENST00000419810.6:ENST00000622018.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	43	2	3.3111	3.9169	4.5227	0.0128818	0.0020006	0.0926667	0.0412555
chr6	32156378	32156478	2844469	0	+	0.45	(0.44,0.476]	chr6	268233	4	SS5_PROX	SS5_PROX:INTRON	PPT2:PPT2-EGFL8	ENSG00000221988.13:ENSG00000258388.7	ENST00000361568.6:ENST00000478521.5:ENST00000395523.5:ENST00000428388.6:ENST00000585246.5:ENST00000375137.6:ENST00000375143.6:ENST00000324816.11:ENST00000424499.1:ENST00000493548.5:ENST00000422437.5:ENST00000436118.2:ENST00000453656.6:ENST00000583227.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	43	2	3.3111	3.9169	4.5227	0.0128818	0.0020006	0.0926667	0.0412555
chr3	195963621	195963721	1896692	0	-	0.43	(0.408,0.44]	chr3	189799	2	SS3_PROX	SS3_PROX:INTRON	SDHAP1	ENSG00000185485.14	ENST00000427149.5:ENST00000427841.5:ENST00000354559.9:ENST00000440850.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	3	67	2	2.3494	3.91678	5.48416	0.00462504	5.43528e-4	0.062717	0.0215026
chr17	32476388	32476485	6598673	0	+	0.371134	(0.35,0.378]	chr17	642012	12	INTRON	INTRON	PSMD11	ENSG00000108671.11	ENST00000649012.1:ENST00000457654.6:ENST00000578397.5:ENST00000261712.8:ENST00000584340.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	45	2	3.26794	3.9167199999999998	4.5655	0.0155464	0.00257067	0.100909	0.0466761
chr7	100035595	100035695	3363297	0	+	0.38	(0.378,0.408]	chr7	314249	15	UTR3	UTR3:EXON_MRNA	ZKSCAN1	ENSG00000106261.17	ENST00000535170.5:ENST00000324306.11:ENST00000620510.1	protein_coding	protein_coding	protein_coding	protein_coding	1	43	2	2.71183	3.916555	5.12128	0.0170789	0.00251746	0.110899	0.0446195
chr7	149169117	149169216	3445184	0	+	0.383838	(0.378,0.408]	chr7	321344	18	INTRON	INTRON	ZNF398	ENSG00000197024.9	ENST00000426851.6:ENST00000475153.6:ENST00000483892.5:ENST00000491174.1	protein_coding	protein_coding	protein_coding	protein_coding	1	43	2	2.71183	3.916555	5.12128	0.0170789	0.00251746	0.110899	0.0446195
chr20	31780056	31780151	7254076	0	+	0.557895	(0.515,0.57]	chr20	736781	7	INTRON	INTRON	TPX2	ENSG00000088325.16	ENST00000340513.4:ENST00000300403.11	protein_coding	protein_coding	protein_coding	protein_coding	1	41	2	3.1473	3.9164899999999996	4.68568	0.00397184	0.00270027	0.0549214	0.0479115
chr10	125132315	125132414	4714057	0	-	0.353535	(0.35,0.378]	chr10	434919	91	INTRON	INTRON	CTBP2	ENSG00000175029.17	ENST00000337195.9:ENST00000411419.6:ENST00000494626.6:ENST00000531469.5:ENST00000460976.5:ENST00000476817.1:ENST00000530884.1:ENST00000530930.1:ENST00000467395.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	49	2	3.08431	3.916455	4.7486	0.0065853	0.00418965	0.0701901	0.0591344
chr22	21930049	21930148	7561497	0	-	0.373737	(0.35,0.378]	chr22	773408	40	INTRON	INTRON	PPM1F	ENSG00000100034.14	ENST00000263212.10:ENST00000407142.5:ENST00000397495.8:ENST00000484588.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	49	2	3.08431	3.916455	4.7486	0.0065853	0.00418965	0.0701901	0.0591344
chr10	32947690	32947789	4592602	0	-	0.393939	(0.378,0.408]	chr10	423511	86	INTRON	INTRON	ITGB1	ENSG00000150093.20	ENST00000609742.3:ENST00000678989.1:ENST00000677363.1:ENST00000302278.8:ENST00000396033.6:ENST00000417122.7:ENST00000676895.1:ENST00000678120.1:ENST00000676623.1:ENST00000678952.1:ENST00000677999.1:ENST00000679187.1:ENST00000678479.1:ENST00000676964.1:ENST00000488494.6:ENST00000488427.2:ENST00000678591.1:ENST00000678943.1:ENST00000437302.6:ENST00000678701.1:ENST00000678766.1:ENST00000676659.1:ENST00000677310.1:ENST00000474568.6:ENST00000676460.1:ENST00000475184.6:ENST00000484088.5:ENST00000480226.5:ENST00000534049.5:ENST00000528877.5:ENST00000414670.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	70	2	2.60363	3.916435	5.22924	0.00172721	0.00153353	0.0374701	0.0361717
chr19	54107187	54107282	7098559	0	+	0.378947	(0.378,0.408]	chr19	711818	4	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	NDUFA3	ENSG00000170906.16	ENST00000419113.5:ENST00000485876.6:ENST00000391764.7:ENST00000422029.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	98	2	3.72397	3.916405	4.10884	3.23378e-4	8.2664e-5	0.0159645	0.00812487
chr1	1689281	1689380	360929	0	-	0.444444	(0.44,0.476]	chr1	42013	121	INTRON	INTRON	SLC35E2B	ENSG00000189339.12	ENST00000614300.4:ENST00000617444.5:ENST00000611123.1:ENST00000481276.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	45	2	2.97451	3.91634	4.85817	0.00853825	0.00223254	0.0780043	0.0435144
chr1	10056953	10057052	19366	0	+	0.444444	(0.44,0.476]	chr1	1838	229	INTRON	INTRON	UBE4B	ENSG00000130939.20	ENST00000672724.1:ENST00000253251.12:ENST00000343090.11:ENST00000377153.5	protein_coding	protein_coding	protein_coding	protein_coding	1	45	2	2.97451	3.91634	4.85817	0.00853825	0.00223254	0.0780043	0.0435144
chr13	41840511	41840610	5581328	0	-	0.474747	(0.44,0.476]	chr13	533505	66	INTRON	INTRON	VWA8	ENSG00000102763.18	ENST00000379310.8:ENST00000281496.6	protein_coding	protein_coding	protein_coding	protein_coding	1	45	2	2.97451	3.91634	4.85817	0.00853825	0.00223254	0.0780043	0.0435144
chr7	50308580	50308679	3316738	0	+	0.454545	(0.44,0.476]	chr7	308243	33	INTRON	INTRON	IKZF1	ENSG00000185811.20	ENST00000642219.1:ENST00000645066.1:ENST00000484847.6:ENST00000646110.1:ENST00000331340.8:ENST00000413698.5:ENST00000349824.8:ENST00000343574.9:ENST00000357364.8:ENST00000440768.6:ENST00000346667.8:ENST00000615491.4:ENST00000359197.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	45	2	2.97451	3.91634	4.85817	0.00853825	0.00223254	0.0780043	0.0435144
chr1	247148457	247148557	683633	0	-	0.38	(0.378,0.408]	chr1	80151	93	INTRON	INTRON	ZNF124	ENSG00000196418.13	ENST00000472531.5:ENST00000476312.1:ENST00000491356.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	46	2	2.36428	3.916305	5.46833	0.0441088	7.05018e-4	0.162255	0.024224
chr19	41282171	41282270	7071229	0	+	0.40404	(0.378,0.408]	chr19	706761	5	INTRON	INTRON	HNRNPUL1	ENSG00000105323.18	ENST00000352456.7:ENST00000595018.5:ENST00000599719.5:ENST00000392006.8:ENST00000378215.8:ENST00000595196.5:ENST00000617774.1:ENST00000602130.5:ENST00000593587.5:ENST00000263367.7:ENST00000599614.5:ENST00000600596.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	46	2	2.84663	3.9162500000000002	4.98587	0.0133954	0.00152268	0.0946278	0.0360297
chr1	28506013	28506084	57166	0	+	0.450704	(0.44,0.476]	chr1	7375	2	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	RCC1:SNHG3	ENSG00000180198.17:ENSG00000242125.3	ENST00000398958.6:ENST00000649185.1:ENST00000413987.1:ENST00000427469.5:ENST00000683442.1:ENST00000447507.1:ENST00000434290.6:ENST00000373833.10	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	68	2430	2	3.86851	3.9161650000000003	3.96382	4.80359e-10	5.58342e-12	2.97502e-6	2.03503e-7
chr3	49009823	49009922	1422196	0	+	0.474747	(0.44,0.476]	chr3	149598	4	INTRON	INTRON	WDR6	ENSG00000178252.19	ENST00000395474.7:ENST00000610967.4:ENST00000429900.6:ENST00000488572.6:ENST00000489684.2:ENST00000462064.5:ENST00000608424.6:ENST00000438660.5:ENST00000473238.6:ENST00000415265.6:ENST00000452875.5:ENST00000471162.5:ENST00000420783.7:ENST00000627177.1:ENST00000448293.5:ENST00000472878.5:ENST00000419837.1:ENST00000461687.1:ENST00000489427.1:ENST00000491365.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	43	2	2.58033	3.91606	5.25179	0.0247511	0.00124521	0.131869	0.0322969
chr12	96394796	96394896	5395229	0	-	0.14	[0,0.28]	chr12	514463	596	INTRON	INTRON	CDK17	ENSG00000059758.8	ENST00000261211.8:ENST00000543119.6:ENST00000542666.5:ENST00000551816.5:ENST00000552496.5:ENST00000552262.1	protein_coding	protein_coding	protein_coding	protein_coding	3	85	2	2.31716	3.9160199999999996	5.51488	0.00702731	0.00314116	0.0754576	0.0500389
chr9	98010770	98010870	4173319	0	+	0.35	(0.32,0.35]	chr9	380295	1	SS3_PROX	SS3_PROX:INTRON	ANP32B	ENSG00000136938.9	ENST00000339399.5	protein_coding	protein_coding	protein_coding	protein_coding	1	50	2	2.89743	3.9158399999999998	4.93425	0.0127608	0.00281048	0.0926667	0.0488779
chr16	12210276	12210376	6293668	0	+	0.49	(0.476,0.515]	chr16	602445	102	INTRON	INTRON	SNX29	ENSG00000048471.14	ENST00000566228.6:ENST00000564791.5	protein_coding	protein_coding	protein_coding	protein_coding	2	56	2	2.68023	3.91583	5.15143	0.00353671	0.00166579	0.0546236	0.0369207
chr3	10148814	10148914	1363186	0	+	0.5	(0.476,0.515]	chr3	143681	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	VHL	ENSG00000134086.9	ENST00000696153.1:ENST00000256474.3:ENST00000696142.1:ENST00000345392.2:ENST00000696143.1:ENST00000477538.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	72	2	2.24612	3.9157849999999996	5.58545	0.00799949	1.04881e-4	0.0766625	0.00863456
chr17	59155731	59155805	6639946	0	+	0.513514	(0.476,0.515]	chr17	648274	1	UTR5	UTR5:EXON_MRNA	PRR11	ENSG00000068489.13	ENST00000578777.5:ENST00000577457.1:ENST00000262293.9:ENST00000578542.5:ENST00000582995.5:ENST00000581182.1:ENST00000580177.5:ENST00000614081.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	74	2	2.92386	3.9157349999999997	4.90761	0.00386428	3.01132e-4	0.0542786	0.0155054
chr1	155928130	155928225	564799	0	-	0.515789	(0.515,0.57]	chr1	67494	6	INTRON	INTRON	KHDC4	ENSG00000132680.11	ENST00000368321.8:ENST00000368320.7:ENST00000368319.3:ENST00000482337.5:ENST00000466713.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	40	2	2.83501	3.91568	4.99635	0.0117686	8.06602e-4	0.0894475	0.0258804
chr1	149237077	149237176	548262	0	-	0.40404	(0.378,0.408]	chr1	64451	356	INTRON	INTRON	ENSG00000215861	ENSG00000215861.7	ENST00000685012.1:ENST00000313342.8:ENST00000663163.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	2	96	2	3.54406	3.915665	4.28727	0.00110718	1.52039e-5	0.0306086	0.00293131
chr7	99453503	99453603	3362005	0	+	0.6	(0.57,1]	chr7	314007	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	CPSF4	ENSG00000160917.15	ENST00000436336.6:ENST00000292476.10:ENST00000451876.5:ENST00000441580.5:ENST00000452047.1:ENST00000471455.1:ENST00000440514.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	29	2	3.2676	3.915625	4.56365	0.00176203	0.00129848	0.0376652	0.0333764
chr12	24886795	24886895	5297284	0	-	0.46	(0.44,0.476]	chr12	503865	50	INTRON	INTRON	BCAT1	ENSG00000060982.15	ENST00000261192.12:ENST00000538118.5:ENST00000342945.9:ENST00000539282.5:ENST00000539780.5:ENST00000544418.1:ENST00000546285.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	42	2	3.14559	3.915615	4.68564	0.00816201	0.00384923	0.0766625	0.0562562
chr12	49447176	49447276	5133747	0	+	0.47	(0.44,0.476]	chr12	483981	50	INTRON	INTRON	SPATS2	ENSG00000123352.18	ENST00000550997.5:ENST00000549538.5:ENST00000549412.5:ENST00000550643.5:ENST00000548654.5:ENST00000548710.5:ENST00000549179.5:ENST00000548377.5:ENST00000549298.5:ENST00000552918.6:ENST00000549375.5:ENST00000553127.5:ENST00000321898.10:ENST00000551540.5:ENST00000548777.5:ENST00000552171.1:ENST00000547865.5:ENST00000548388.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	42	2	3.14559	3.915615	4.68564	0.00816201	0.00384923	0.0766625	0.0562562
chr2	241750657	241750745	1056469	0	+	0.477273	(0.476,0.515]	chr2	112668	4	SS5_PROX	SS5_PROX:INTRON	D2HGDH	ENSG00000180902.18	ENST00000403782.5:ENST00000436747.5:ENST00000321264.9:ENST00000400769.6:ENST00000454048.1:ENST00000432449.1:ENST00000496252.5:ENST00000467427.5:ENST00000486953.5:ENST00000470343.5:ENST00000473126.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	45	2	2.48527	3.91558	5.34589	0.03496	3.224e-4	0.13747500000000001	0.0159645
chr11	74974568	74974667	4830364	0	+	0.373737	(0.35,0.378]	chr11	450690	45	INTRON	INTRON	SPCS2	ENSG00000118363.13	ENST00000530257.5:ENST00000526361.1:ENST00000532972.5:ENST00000263672.11:ENST00000528265.1:ENST00000527225.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	82	2	2.33792	3.9152500000000003	5.49258	0.0024225	8.19894e-4	0.0454587	0.0264086
chr12	111520644	111520712	5412437	0	-	0.294118	(0.28,0.32]	chr12	516905	2	SS5_PROX	SS5_PROX:INTRON	ATXN2	ENSG00000204842.18	ENST00000642389.2:ENST00000608853.5:ENST00000672613.1:ENST00000673436.1:ENST00000643669.2:ENST00000616825.4:ENST00000389153.10:ENST00000550104.5:ENST00000483311.6:ENST00000672335.1:ENST00000492467.6:ENST00000673557.1:ENST00000673283.1:ENST00000673449.1:ENST00000535949.5:ENST00000542287.6:ENST00000644883.1:ENST00000647305.1:ENST00000550236.1:ENST00000671792.1:ENST00000392645.6:ENST00000672105.1:ENST00000471866.5:ENST00000549455.1:ENST00000548492.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	78	2	1.98806	3.91522	5.84238	0.0199553	5.0114e-4	0.120668	0.0206993
chr11	72100041	72100136	4976994	0	-	0.463158	(0.44,0.476]	chr11	470186	4	INTRON	INTRON	LAMTOR1	ENSG00000149357.10	ENST00000545249.5:ENST00000535107.5:ENST00000278671.10:ENST00000538404.1:ENST00000535872.1:ENST00000539797.5:ENST00000541403.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	42	2	2.74372	3.9151550000000004	5.08659	0.0153007	0.00226401	0.108569	0.0425438
chr2	70049947	70050044	1150874	0	-	0.453608	(0.44,0.476]	chr2	122865	14	EXON_LNCRNA	EXON_LNCRNA:INTRON	PCBP1-AS1	ENSG00000179818.16	ENST00000419542.5:ENST00000682294.1:ENST00000684630.1:ENST00000630975.3:ENST00000435880.6:ENST00000629339.3:ENST00000667874.1:ENST00000628659.2:ENST00000628308.2:ENST00000626515.2:ENST00000625447.2:ENST00000628305.2:ENST00000625625.2:ENST00000625864.2:ENST00000630522.2:ENST00000628837.2:ENST00000627325.2:ENST00000629084.2:ENST00000629603.2:ENST00000625215.2:ENST00000627189.2:ENST00000629836.2:ENST00000626898.2:ENST00000628883.2:ENST00000629533.2:ENST00000627181.2:ENST00000630214.2:ENST00000627918.2:ENST00000628374.2:ENST00000627327.2:ENST00000626495.2:ENST00000629605.2:ENST00000626370.2:ENST00000626842.2:ENST00000630457.2:ENST00000629184.2:ENST00000628551.2:ENST00000630746.2:ENST00000627398.2:ENST00000457076.5:ENST00000625783.2:ENST00000625490.2:ENST00000627050.2:ENST00000630759.2:ENST00000628667.2:ENST00000626632.2:ENST00000631110.2:ENST00000626609.2:ENST00000629506.2:ENST00000630985.2:ENST00000413436.5:ENST00000628147.2:ENST00000631107.2:ENST00000629415.2:ENST00000418564.5:ENST00000630280.2:ENST00000415222.5:ENST00000628322.2:ENST00000626440.2:ENST00000665708.1:ENST00000655086.1:ENST00000420309.6:ENST00000627487.3:ENST00000670036.1:ENST00000655096.1:ENST00000685127.1:ENST00000684907.1:ENST00000685079.1:ENST00000687866.1:ENST00000692564.1:ENST00000686517.1:ENST00000689138.1:ENST00000688056.1:ENST00000594376.6:ENST00000692333.1:ENST00000688045.1:ENST00000657291.1:ENST00000691987.1:ENST00000664483.1:ENST00000601431.6:ENST00000685803.1:ENST00000690200.1:ENST00000686800.1:ENST00000684857.1:ENST00000627037.2:ENST00000629212.2:ENST00000688473.1:ENST00000456161.5:ENST00000627074.2:ENST00000419963.5:ENST00000625227.2:ENST00000599673.5:ENST00000629407.2:ENST00000418308.5:ENST00000630283.2:ENST00000629178.2:ENST00000627542.2:ENST00000626574.2:ENST00000596028.5:ENST00000629485.2:ENST00000630685.2:ENST00000452431.5:ENST00000629374.2:ENST00000423402.5:ENST00000411429.5:ENST00000629188.2:ENST00000434781.5:ENST00000626162.2:ENST00000654878.1:ENST00000659586.1:ENST00000457770.6:ENST00000415742.5:ENST00000627540.2:ENST00000628263.2:ENST00000657575.2:ENST00000689275.1:ENST00000687961.1:ENST00000416395.6:ENST00000692733.1:ENST00000654336.1:ENST00000686055.1:ENST00000626509.3:ENST00000425601.6:ENST00000653064.1:ENST00000656326.1:ENST00000668711.1:ENST00000665172.1:ENST00000630520.3:ENST00000663209.1:ENST00000659305.1:ENST00000654601.1:ENST00000663375.1:ENST00000654958.1:ENST00000665838.1:ENST00000653606.1:ENST00000659941.1:ENST00000669583.1:ENST00000660903.1:ENST00000653596.1:ENST00000656308.1:ENST00000449178.6:ENST00000625955.3:ENST00000655140.1:ENST00000661989.1:ENST00000664419.1:ENST00000670785.1:ENST00000664773.1:ENST00000661703.1:ENST00000658454.1:ENST00000664049.1:ENST00000655058.1:ENST00000366234.7:ENST00000599427.5:ENST00000597318.5:ENST00000625518.2:ENST00000425333.5:ENST00000429599.6:ENST00000432604.5:ENST00000421843.5:ENST00000458686.5:ENST00000421255.5:ENST00000413069.5:ENST00000685037.1:ENST00000458698.6:ENST00000670786.1:ENST00000657164.1:ENST00000665264.1:ENST00000603347.5:ENST00000604346.5:ENST00000413791.5:ENST00000690464.1:ENST00000690924.1:ENST00000688311.1:ENST00000691287.1:ENST00000416506.5:ENST00000655481.1:ENST00000655420.1:ENST00000612202.5:ENST00000666167.1:ENST00000664958.1:ENST00000416068.6:ENST00000653289.1:ENST00000653811.1:ENST00000661863.1:ENST00000659531.1:ENST00000667307.1:ENST00000437019.2:ENST00000666074.1:ENST00000654716.1:ENST00000439670.6:ENST00000669812.1:ENST00000660404.2:ENST00000656852.1:ENST00000670845.1:ENST00000669570.1:ENST00000422515.6:ENST00000653114.1:ENST00000667952.1:ENST00000662224.1:ENST00000664533.1:ENST00000670313.1:ENST00000626558.3:ENST00000670974.1:ENST00000664014.1:ENST00000668191.1:ENST00000609543.6:ENST00000664754.1:ENST00000662103.1:ENST00000669896.1:ENST00000629943.3:ENST00000625788.3:ENST00000663033.1:ENST00000442040.5	lncRNA	lncRNA	lncRNA	lncRNA	1	42	2	2.74372	3.9151550000000004	5.08659	0.0153007	0.00226401	0.108569	0.0425438
chr4	87367354	87367453	2199038	0	-	0.454545	(0.44,0.476]	chr4	215756	14	INTRON	INTRON	HSD17B11	ENSG00000198189.11	ENST00000358290.9:ENST00000507518.5:ENST00000502576.5:ENST00000507286.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	42	2	2.74372	3.9151550000000004	5.08659	0.0153007	0.00226401	0.108569	0.0425438
chr1	218326362	218326462	317580	0	+	0.26	[0,0.28]	chr1	36399	184	INTRON	INTRON	RRP15	ENSG00000067533.6	ENST00000366932.4	protein_coding	protein_coding	protein_coding	protein_coding	1	53	2	2.43761	3.9149149999999997	5.39222	0.0423864	0.00453865	0.161744	0.0595107
chr8	90012451	90012551	3791870	0	+	0.28	[0,0.28]	chr8	351697	58	INTRON	INTRON	DECR1	ENSG00000104325.7	ENST00000519328.5:ENST00000517314.5:ENST00000521603.5:ENST00000523447.5:ENST00000517597.5:ENST00000519410.5:ENST00000220764.7:ENST00000522161.5:ENST00000519007.5:ENST00000521668.1:ENST00000518725.5:ENST00000517761.5:ENST00000520227.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	53	2	2.43761	3.9149149999999997	5.39222	0.0423864	0.00453865	0.161744	0.0595107
chr1	51863017	51863117	455140	0	-	0.22	[0,0.28]	chr1	54631	2	INTRON	INTRON	NRDC	ENSG00000078618.23	ENST00000354831.11:ENST00000539524.5:ENST00000352171.12:ENST00000491410.1:ENST00000468722.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	52	2	3.00498	3.9146549999999998	4.82433	0.0200334	0.00876063	0.109608	0.0846118
chr15	78880779	78880879	6069622	0	+	0.26	[0,0.28]	chr15	578203	2	SS5_PROX	SS5_PROX:INTRON	MORF4L1	ENSG00000185787.15	ENST00000379535.8:ENST00000559697.5:ENST00000331268.9:ENST00000557961.5:ENST00000559930.5:ENST00000426013.7:ENST00000558746.5:ENST00000558893.5:ENST00000558830.5:ENST00000558522.5:ENST00000559619.5:ENST00000559345.5:ENST00000561171.5:ENST00000558502.5:ENST00000559258.5:ENST00000559690.5:ENST00000559158.5:ENST00000560422.5:ENST00000558539.5:ENST00000559244.5:ENST00000559751.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	52	2	3.00498	3.9146549999999998	4.82433	0.0200334	0.00876063	0.109608	0.0846118
chr17	81686021	81686118	6691015	0	+	0.505155	(0.476,0.515]	chr17	654014	4	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HGS	ENSG00000185359.14	ENST00000677161.1:ENST00000678096.1:ENST00000679191.1:ENST00000676546.1:ENST00000678387.1:ENST00000679170.1:ENST00000677109.1:ENST00000677484.1:ENST00000678115.1:ENST00000677243.1:ENST00000677044.1:ENST00000679336.1:ENST00000678196.1:ENST00000676462.1:ENST00000576393.5:ENST00000576498.5:ENST00000678105.1:ENST00000676478.1:ENST00000329138.9:ENST00000676721.1:ENST00000677209.1:ENST00000677225.1:ENST00000678866.1:ENST00000679275.1:ENST00000678541.1:ENST00000676729.1:ENST00000572392.2:ENST00000677012.1:ENST00000577012.1:ENST00000571518.6:ENST00000678846.1:ENST00000678658.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	93	2	3.49587	3.91462	4.33337	0.00120011	1.10019e-5	0.0315806	0.00244462
chr12	46240585	46240681	5316240	0	-	0.427083	(0.408,0.44]	chr12	505737	3	INTRON	INTRON	SLC38A1	ENSG00000111371.16	ENST00000398637.10:ENST00000439706.5:ENST00000549049.5:ENST00000546893.5:ENST00000552197.5:ENST00000549633.5:ENST00000551506.1:ENST00000550173.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	45	2	2.58624	3.9144550000000002	5.24267	0.0273686	4.83767e-4	0.123904	0.0199261
chr12	108728345	108728445	5406754	0	-	0.3	(0.28,0.32]	chr12	516035	254	INTRON	INTRON	CORO1C	ENSG00000110880.11	ENST00000261401.8:ENST00000541050.5:ENST00000549384.5:ENST00000550542.5:ENST00000552871.5:ENST00000551550.5:ENST00000546571.5:ENST00000551044.1:ENST00000551059.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	48	2	3.02632	3.914435	4.80255	0.0137406	0.0071944	0.0949306	0.0756118
chr13	102626705	102626802	5532291	0	+	0.319588	(0.28,0.32]	chr13	528667	3	SS3_PROX	SS3_PROX:INTRON	TPP2	ENSG00000134900.12	ENST00000376052.5:ENST00000651448.1:ENST00000376065.8:ENST00000652308.1:ENST00000651544.1:ENST00000651748.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	48	2	3.02632	3.914435	4.80255	0.0137406	0.0071944	0.0949306	0.0756118
chr22	27925861	27925961	7492848	0	+	0.3	(0.28,0.32]	chr22	764486	10	INTRON	INTRON	TTC28-AS1	ENSG00000235954.8	ENST00000430853.5:ENST00000434221.6:ENST00000417497.6:ENST00000424161.6:ENST00000419253.1:ENST00000454741.5:ENST00000659843.1:ENST00000665376.1:ENST00000453632.6:ENST00000662682.1:ENST00000655332.1:ENST00000454996.7:ENST00000665505.1:ENST00000435348.6:ENST00000664946.1:ENST00000425112.2:ENST00000654553.1:ENST00000669227.1:ENST00000452612.5:ENST00000688200.1:ENST00000662424.1	lncRNA	lncRNA	lncRNA	lncRNA	1	48	2	3.02632	3.914435	4.80255	0.0137406	0.0071944	0.0949306	0.0756118
chr7	138573206	138573306	3435784	0	+	0.29	(0.28,0.32]	chr7	320028	3	SS3_PROX	SS3_PROX:INTRON	TRIM24	ENSG00000122779.18	ENST00000343526.9:ENST00000415680.6:ENST00000493595.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	48	2	3.02632	3.914435	4.80255	0.0137406	0.0071944	0.0949306	0.0756118
chr9	125274976	125275076	4198387	0	+	0.31	(0.28,0.32]	chr9	383148	56	INTRON	INTRON	GAPVD1	ENSG00000165219.23	ENST00000497580.5:ENST00000461379.5:ENST00000297933.11:ENST00000394084.5:ENST00000469528.5:ENST00000470056.5:ENST00000394105.6:ENST00000394083.6:ENST00000495955.5:ENST00000467750.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	48	2	3.02632	3.914435	4.80255	0.0137406	0.0071944	0.0949306	0.0756118
chr1	52458949	52459048	457598	0	-	0.383838	(0.378,0.408]	chr1	54983	1	INTRON	INTRON	TUT4	ENSG00000134744.14	ENST00000371544.7:ENST00000257177.9:ENST00000469810.1:ENST00000528642.5:ENST00000497120.1:ENST00000484723.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	44	2	2.54849	3.91441	5.28033	0.0273196	0.00143651	0.136494	0.0340925
chr12	70268556	70268655	5166683	0	+	0.434343	(0.408,0.44]	chr12	489374	239	INTRON	INTRON	CNOT2	ENSG00000111596.14	ENST00000547780.5:ENST00000418359.7:ENST00000552319.5:ENST00000550160.5:ENST00000551661.5:ENST00000551132.5:ENST00000553078.5:ENST00000548021.5:ENST00000550641.6:ENST00000229195.8:ENST00000552915.5:ENST00000549443.5:ENST00000548741.5:ENST00000552483.5:ENST00000552422.5:ENST00000551179.1:ENST00000547321.5:ENST00000553020.5:ENST00000548159.5:ENST00000549750.5:ENST00000551043.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	43	2	3.31257	3.914305	4.51604	0.0137419	0.00198621	0.0949306	0.0411469
chr3	5135770	5135870	1353710	0	+	0.41	(0.408,0.44]	chr3	142361	68	INTRON	INTRON	ARL8B	ENSG00000134108.14	ENST00000429403.5:ENST00000256496.8:ENST00000455168.5:ENST00000444332.1:ENST00000419534.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	43	2	3.31257	3.914305	4.51604	0.0137419	0.00198621	0.0949306	0.0411469
chr2	24662755	24662855	710979	0	+	0.44	(0.408,0.44]	chr2	82237	36	INTRON	INTRON	NCOA1	ENSG00000084676.16	ENST00000348332.8:ENST00000406961.5:ENST00000405141.5:ENST00000407230.5:ENST00000288599.9:ENST00000395856.3	protein_coding	protein_coding	protein_coding	protein_coding	5	85	2	1.99397	3.914295	5.83462	0.00610802	1.18776e-4	0.0706941	0.00987467
chr1	50782408	50782507	450474	0	-	0.191919	[0,0.28]	chr1	54249	373	INTRON	INTRON	FAF1	ENSG00000185104.21	ENST00000396153.7:ENST00000487898.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	52	2	2.57033	3.9142399999999995	5.25815	0.0305273	0.0066548	0.143385	0.0703807
chr13	111282827	111282904	5546011	0	+	0.493506	(0.476,0.515]	chr13	529869	1	EXON_LNCRNA	EXON_LNCRNA:SS3_PROX:INTRON	ARHGEF7	ENSG00000102606.19	ENST00000317133.9:ENST00000375739.6:ENST00000375741.6:ENST00000646102.2:ENST00000469877.5:ENST00000466143.5:ENST00000218789.9:ENST00000375736.8:ENST00000426073.6:ENST00000375723.5:ENST00000478679.5:ENST00000491688.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	67	2	2.37448	3.91419	5.4539	0.00419067	5.16081e-4	0.0591344	0.0208667
chr7	73517535	73517635	3555053	0	-	0.35	(0.32,0.35]	chr7	330813	63	INTRON	INTRON	BAZ1B	ENSG00000009954.11	ENST00000339594.9:ENST00000404251.1	protein_coding	protein_coding	protein_coding	protein_coding	2	61	2	2.4053	3.914175	5.42305	0.0108284	0.00149027	0.0920575	0.035
chr11	75322137	75322237	4989862	0	-	0.51	(0.476,0.515]	chr11	471494	101	INTRON	INTRON	ARRB1	ENSG00000137486.17	ENST00000420843.7:ENST00000360025.7:ENST00000533255.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	43	2	2.56868	3.914065	5.25945	0.0256676	0.00111445	0.133676	0.0306328
chr22	47718007	47718106	7540228	0	+	0.494949	(0.476,0.515]	chr22	770719	69	INTRON	INTRON	ENSG00000224271	ENSG00000224271.7	ENST00000664761.1:ENST00000651071.1:ENST00000650683.1:ENST00000651536.1:ENST00000652499.1:ENST00000652656.1:ENST00000652072.1:ENST00000651445.1:ENST00000423737.5:ENST00000650660.1:ENST00000651056.1:ENST00000652611.1:ENST00000652399.1:ENST00000652123.1:ENST00000651311.1:ENST00000651458.1:ENST00000652505.1:ENST00000652702.2:ENST00000652334.1:ENST00000652030.2:ENST00000651403.1:ENST00000652228.1:ENST00000651124.1:ENST00000650972.1:ENST00000651985.1:ENST00000651637.1:ENST00000650924.1:ENST00000651003.1:ENST00000652168.1:ENST00000651948.2:ENST00000651293.1:ENST00000651939.1:ENST00000650787.1:ENST00000651517.1:ENST00000651662.1:ENST00000652690.1:ENST00000651638.1:ENST00000670853.1:ENST00000652750.1:ENST00000652080.1:ENST00000651294.1:ENST00000652164.1:ENST00000651538.1:ENST00000650775.1:ENST00000651983.1:ENST00000651033.1:ENST00000651584.1:ENST00000650884.1:ENST00000651270.1	lncRNA	lncRNA	lncRNA	lncRNA	1	43	2	2.56868	3.914065	5.25945	0.0256676	0.00111445	0.133676	0.0306328
chr5	53902843	53902943	2616831	0	-	0.52	(0.515,0.57]	chr5	248833	151	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	40	2	2.76354	3.914065	5.06459	0.0147344	6.03964e-4	0.0983813	0.0223465
chr5	79617329	79617429	2398774	0	+	0.24	[0,0.28]	chr5	231682	4	SS3_PROX	SS3_PROX:INTRON	TENT2	ENSG00000164329.14	ENST00000505571.5:ENST00000423041.6:ENST00000504233.5:ENST00000453514.6:ENST00000428308.6:ENST00000515807.5:ENST00000296783.7:ENST00000514095.5:ENST00000508620.5:ENST00000503620.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	130	2	3.60019	3.913715	4.22724	0.00172089	5.69854e-5	0.0374701	0.00617188
chr4	25823424	25823524	2120228	0	-	0.5	(0.476,0.515]	chr4	209446	9	INTRON	INTRON	SEL1L3	ENSG00000091490.11	ENST00000264868.9:ENST00000399878.8:ENST00000502949.5	protein_coding	protein_coding	protein_coding	protein_coding	1	42	2	3.13389	3.913545	4.6932	0.00753088	0.00405473	0.074841	0.0578376
chr14	60269532	60269632	5736411	0	+	0.42	(0.408,0.44]	chr14	544832	7	INTRON	INTRON	PPM1A	ENSG00000100614.18	ENST00000325642.7:ENST00000531143.6:ENST00000532036.2:ENST00000395076.9:ENST00000325658.3:ENST00000528241.2:ENST00000525399.2:ENST00000531937.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	43	2	2.58179	3.9133999999999998	5.24501	0.024638	0.00137378	0.131869	0.0336718
chr4	73242392	73242492	2160663	0	-	0.27	[0,0.28]	chr4	212799	194	INTRON	INTRON	ANKRD17	ENSG00000132466.20	ENST00000358602.9:ENST00000558247.5:ENST00000330838.10:ENST00000561029.1	protein_coding	protein_coding	protein_coding	protein_coding	1	57	2	2.73384	3.913325	5.09281	0.0246308	0.00372534	0.12011	0.0561984
chr5	176486589	176486689	2552556	0	+	0.34	(0.32,0.35]	chr5	243681	1	SS5_PROX	SS5_PROX:INTRON	FAF2	ENSG00000113194.13	ENST00000261942.7:ENST00000510446.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	46	2	3.13277	3.913285	4.6938	0.0137794	0.00458313	0.0949306	0.0622676
chr16	16518112	16518212	6311043	0	+	0.29	(0.28,0.32]	chr16	604098	181	INTRON	INTRON	ENSG00000260126	ENSG00000260126.2	ENST00000567465.2	lncRNA	lncRNA	lncRNA	lncRNA	6	108	2	1.56729	3.91324	6.25919	0.0260617	9.00783e-5	0.133676	0.00844245
chr3	125257526	125257626	1805922	0	-	0.41	(0.408,0.44]	chr3	181414	228	INTRON	INTRON	ZNF148	ENSG00000163848.20	ENST00000360647.9:ENST00000468369.5:ENST00000484491.5:ENST00000492394.5:ENST00000485866.5:ENST00000497929.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	42	2	3.14706	3.9130000000000003	4.67894	0.0087648	0.00382411	0.0788605	0.0562562
chr4	48850482	48850582	1958416	0	+	0.44	(0.408,0.44]	chr4	196244	4	SS5_PROX	SS5_PROX:INTRON	OCIAD1	ENSG00000109180.15	ENST00000509122.5:ENST00000505922.6:ENST00000512981.5:ENST00000396448.6:ENST00000512236.5:ENST00000381473.7:ENST00000511102.5:ENST00000264312.12:ENST00000444354.6:ENST00000509246.5:ENST00000506801.5:ENST00000503016.5:ENST00000510824.5:ENST00000425583.6:ENST00000508293.5:ENST00000513391.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	42	2	3.14706	3.9130000000000003	4.67894	0.0087648	0.00382411	0.0788605	0.0562562
chr16	2753645	2753745	6279826	0	+	0.47	(0.44,0.476]	chr16	600758	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	SRRM2	ENSG00000167978.17	ENST00000576924.5:ENST00000301740.13:ENST00000575009.5:ENST00000576894.5:ENST00000575701.4:ENST00000630499.2:ENST00000576415.5:ENST00000571378.5:ENST00000574340.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	85	2	1.82106	3.9129	6.00474	0.0124107	4.73674e-5	0.0973643	0.00593269
chr17	3822213	3822294	6707959	0	-	0.419753	(0.408,0.44]	chr17	656996	3	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	NCBP3	ENSG00000074356.17	ENST00000389005.6:ENST00000574911.5:ENST00000575815.5:ENST00000574379.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	124	2	3.8926	3.912845	3.93309	1.78185e-4	5.3116e-6	0.0121697	0.00159238
chr11	73830772	73830871	4825603	0	+	0.333333	(0.32,0.35]	chr11	450328	46	INTRON	INTRON	MRPL48	ENSG00000175581.14	ENST00000508278.6:ENST00000310614.12:ENST00000540162.5:ENST00000544140.5:ENST00000544819.5:ENST00000497094.6:ENST00000411840.6:ENST00000398483.7:ENST00000535277.5:ENST00000542303.5:ENST00000537007.5:ENST00000543058.1:ENST00000543374.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	62	2	2.7493	3.912795	5.07629	0.00468114	0.00296357	0.0600108	0.0500135
chr1	21700598	21700698	396008	0	-	0.26	[0,0.28]	chr1	47217	50	INTRON	INTRON	USP48	ENSG00000090686.16	ENST00000400301.5:ENST00000308271.14:ENST00000374732.7:ENST00000529637.5:ENST00000464577.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	79	2	1.812	3.91276	6.01352	0.0729149	1.07908e-4	0.189235	0.00878438
chr18	55569299	55569399	6978506	0	-	0.28	[0,0.28]	chr18	690445	160	INTRON	INTRON	TCF4	ENSG00000196628.20	ENST00000354452.8:ENST00000616053.4:ENST00000636400.2:ENST00000356073.8:ENST00000636751.2:ENST00000635822.2:ENST00000637115.2:ENST00000638154.3:ENST00000564999.5:ENST00000629387.2:ENST00000568673.5:ENST00000540999.5:ENST00000537578.5:ENST00000568740.5:ENST00000565018.6:ENST00000566279.5:ENST00000566286.5:ENST00000567880.5:ENST00000398339.5:ENST00000564403.6:ENST00000627136.2:ENST00000566514.5:ENST00000630319.2:ENST00000568169.5:ENST00000565908.6:ENST00000627685.2:ENST00000626595.2:ENST00000626425.2:ENST00000563824.5:ENST00000568147.5:ENST00000563888.6:ENST00000564343.5:ENST00000627784.2:ENST00000562543.5:ENST00000562847.5:ENST00000569357.4:ENST00000674598.1:ENST00000627320.2:ENST00000630224.2:ENST00000565124.4:ENST00000627568.2:ENST00000637941.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	59	2	2.97616	3.912735	4.84931	0.0128425	0.00779241	0.0926667	0.0787356
chr3	196923751	196923851	1597008	0	+	0.33	(0.32,0.35]	chr3	165430	2	SS5_PROX	SS5_PROX:INTRON	SENP5	ENSG00000119231.11	ENST00000445299.6:ENST00000323460.10:ENST00000419026.5:ENST00000448068.5	protein_coding	protein_coding	protein_coding	protein_coding	1	46	2	2.64129	3.91272	5.18415	0.0222819	0.00333629	0.124303	0.0512081
chr6	167017441	167017540	3033551	0	+	0.434343	(0.408,0.44]	chr6	282656	35	INTRON	INTRON	CEP43	ENSG00000213066.13	ENST00000622353.4:ENST00000366847.9:ENST00000349556.4	protein_coding	protein_coding	protein_coding	protein_coding	2	92	2	3.75882	3.912695	4.06657	4.04678e-4	5.10925e-5	0.0185763	0.00585477
chr10	50554487	50554586	4619995	0	-	0.555556	(0.515,0.57]	chr10	425452	342	INTRON	INTRON	SGMS1	ENSG00000198964.14	ENST00000429490.5:ENST00000361781.7:ENST00000619438.4:ENST00000609445.5:ENST00000608287.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	54	2	2.21273	3.91261	5.61249	0.0196151	4.24748e-5	0.109486	0.00526976
chr1	16636967	16637067	383750	0	-	0.55	(0.515,0.57]	chr1	45226	14	INTRON	INTRON	CROCCP2	ENSG00000215908.10	ENST00000639456.1:ENST00000412962.4:ENST00000635081.1:ENST00000362058.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	3	61	2	2.17039	3.912565	5.65474	0.00900252	9.00945e-5	0.0851009	0.00844245
chrX	53667288	53667388	7821715	0	-	0.29	(0.28,0.32]	chrX	798234	128	INTRON	INTRON	HUWE1	ENSG00000086758.16	ENST00000262854.11:ENST00000342160.7:ENST00000218328.12:ENST00000446750.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	65	2	2.67153	3.9125550000000002	5.15358	0.0052282	0.00436402	0.0633615	0.060356
chr5	138180825	138180921	2494557	0	+	0.479167	(0.476,0.515]	chr5	238327	6	INTRON	INTRON	KIF20A	ENSG00000112984.12	ENST00000513276.5:ENST00000394894.8:ENST00000508792.5:ENST00000511638.5:ENST00000503417.1:ENST00000504621.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	85	2	1.84346	3.91237	5.98128	0.0114152	4.70386e-5	0.095586	0.00593131
chr17	62043176	62043275	6810659	0	-	0.272727	[0,0.28]	chr17	672946	72	INTRON	INTRON	MED13	ENSG00000108510.10	ENST00000397786.7	protein_coding	protein_coding	protein_coding	protein_coding	2	71	2	2.6632	3.91225	5.1613	0.00866441	0.00515076	0.0787025	0.0650394
chr4	26433461	26433559	1937832	0	+	0.214286	[0,0.28]	chr4	194470	26	UTR3	UTR3:EXON_MRNA	RBPJ	ENSG00000168214.22	ENST00000355476.8:ENST00000342320.8	protein_coding	protein_coding	protein_coding	protein_coding	7	126	2	1.53862	3.9122399999999997	6.28586	0.0254957	2.0925e-4	0.133676	0.0131276
chr18	73228535	73228634	6988258	0	-	0.525253	(0.515,0.57]	chr18	691704	274	INTRON	INTRON	LINC02864	ENSG00000263711.6	ENST00000584544.5:ENST00000581011.5:ENST00000581862.6:ENST00000669547.1:ENST00000661525.1:ENST00000583405.5	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	1	38	2	2.98677	3.912205	4.83764	0.00632549	0.00279527	0.0722266	0.0469265
chr22	19106257	19106357	7551853	0	-	0.52	(0.515,0.57]	chr22	771903	164	INTRON	INTRON	DGCR2	ENSG00000070413.20	ENST00000537045.5:ENST00000545799.5:ENST00000263196.12:ENST00000389262.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	38	2	2.98677	3.912205	4.83764	0.00632549	0.00279527	0.0722266	0.0469265
chr4	78806872	78806972	1981690	0	+	0.53	(0.515,0.57]	chr4	198463	298	INTRON	INTRON	BMP2K	ENSG00000138756.19	ENST00000389010.7:ENST00000502613.3:ENST00000502871.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	38	2	2.98677	3.912205	4.83764	0.00632549	0.00279527	0.0722266	0.0469265
chr7	35822057	35822157	3306104	0	+	0.52	(0.515,0.57]	chr7	306967	204	INTRON	INTRON	SEPTIN7	ENSG00000122545.21	ENST00000399034.7:ENST00000435235.6:ENST00000350320.11:ENST00000672279.1:ENST00000634600.1:ENST00000635669.1:ENST00000635175.1:ENST00000475109.5:ENST00000635047.1:ENST00000493626.5:ENST00000473201.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	38	2	2.98677	3.912205	4.83764	0.00632549	0.00279527	0.0722266	0.0469265
chrX	123647671	123647771	7878191	0	-	0.55	(0.515,0.57]	chrX	802527	19	INTRON	INTRON	THOC2	ENSG00000125676.20	ENST00000245838.13:ENST00000355725.8:ENST00000491737.5	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	2.98677	3.912205	4.83764	0.00632549	0.00279527	0.0722266	0.0469265
chr7	131363141	131363241	3416795	0	+	0.42	(0.408,0.44]	chr7	319187	348	INTRON	INTRON	MKLN1	ENSG00000128585.18	ENST00000421797.6:ENST00000416992.6:ENST00000429546.5:ENST00000446815.5:ENST00000494286.5:ENST00000352689.11:ENST00000494785.5:ENST00000458153.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	57	2	2.86612	3.9121449999999998	4.95817	0.00372419	0.00157924	0.0535094	0.0366789
chr3	25735233	25735329	1642346	0	-	0.291667	(0.28,0.32]	chr3	168636	14	EXON_MRNA	EXON_MRNA:INTRON	NGLY1	ENSG00000151092.18	ENST00000280700.10:ENST00000428257.5:ENST00000675217.1:ENST00000676225.1:ENST00000493324.5:ENST00000396649.7:ENST00000675178.1:ENST00000675680.1:ENST00000308710.9:ENST00000280699.13:ENST00000496726.5:ENST00000674841.1:ENST00000675234.1:ENST00000463611.2:ENST00000417874.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	72	2	2.47203	3.91196	5.35189	0.0114089	8.52844e-4	0.0886611	0.0264928
chr7	140893784	140893884	3663424	0	-	0.38	(0.378,0.408]	chr7	340105	432	INTRON	INTRON	BRAF	ENSG00000157764.14	ENST00000496384.7:ENST00000644969.2:ENST00000646891.1:ENST00000644905.1:ENST00000642228.1:ENST00000288602.11:ENST00000646730.1:ENST00000497784.2:ENST00000642272.1:ENST00000642808.1:ENST00000643790.1:ENST00000469930.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	76	2	1.73164	3.9119	6.09216	0.0441773	7.66781e-6	0.149888	0.00197346
chr12	103773984	103774082	5401119	0	-	0.397959	(0.378,0.408]	chr12	515204	18	UTR3	UTR3:EXON_MRNA:INTRON	NT5DC3	ENSG00000111696.12	ENST00000447799.5:ENST00000392876.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	57	2	2.35527	3.9118	5.46833	0.0121511	7.05018e-4	0.0963966	0.024224
chr1	42833563	42833660	84469	0	+	0.309278	(0.28,0.32]	chr1	11106	21	INTRON	INTRON	ERMAP	ENSG00000164010.15	ENST00000372517.8:ENST00000647120.1:ENST00000487556.6:ENST00000642150.1:ENST00000372514.7:ENST00000328249.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	52	2	2.57195	3.91168	5.25141	0.0331711	0.00125199	0.133994	0.0328543
chr2	32395593	32395693	731167	0	+	0.31	(0.28,0.32]	chr2	84302	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	BIRC6	ENSG00000115760.15	ENST00000421745.7:ENST00000648282.1:ENST00000466527.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	52	2	2.67975	3.91158	5.14341	0.0252505	0.00185891	0.12011	0.039946
chr6	20450269	20450369	2827933	0	+	0.33	(0.32,0.35]	chr6	265583	102	INTRON	INTRON	E2F3	ENSG00000112242.16	ENST00000346618.8:ENST00000535432.2	protein_coding	protein_coding	protein_coding	protein_coding	2	61	2	2.58753	3.911365	5.2352	0.00560122	0.0028268	0.0678837	0.0472361
chr17	57314525	57314625	6633334	0	+	0.41	(0.408,0.44]	chr17	648024	38	INTRON	INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000581776.5:ENST00000674961.1:ENST00000582453.5:ENST00000675656.1:ENST00000322684.7:ENST00000579590.5:ENST00000676073.1:ENST00000675822.1:ENST00000442934.6:ENST00000579180.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	47	2	2.27698	3.911295	5.54561	0.0583528	1.20601e-4	0.167723	0.00938389
chr10	22570442	22570540	4579050	0	-	0.581633	(0.57,1]	chr10	421992	10	INTRON	INTRON	PIP4K2A	ENSG00000150867.14	ENST00000376573.9:ENST00000323883.11:ENST00000545335.5:ENST00000604912.1:ENST00000422321.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	41	2	3.25883	3.9112400000000003	4.56365	0.00129848	1.51392e-4	0.0333764	0.0112689
chr1	17421421	17421515	384799	0	-	0.553191	(0.515,0.57]	chr1	45471	2	INTRON	INTRON	RCC2	ENSG00000179051.14	ENST00000375436.9:ENST00000375433.3	protein_coding	protein_coding	protein_coding	protein_coding	9	277	2	3.47784	3.91097	4.3441	2.19709e-7	2.40591e-8	2.22455e-4	5.25241e-5
chr4	139173668	139173768	2247312	0	-	0.53	(0.515,0.57]	chr4	219601	338	INTRON	INTRON	ELF2	ENSG00000109381.21	ENST00000394235.6:ENST00000686138.1:ENST00000511184.5:ENST00000511006.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	38	2	3.05839	3.910415	4.76244	0.00485936	0.00362147	0.0640618	0.0533855
chr9	129054890	129054989	4208699	0	+	0.555556	(0.515,0.57]	chr9	385504	31	INTRON	INTRON	MIGA2	ENSG00000148343.19	ENST00000684074.1:ENST00000439290.5:ENST00000445183.5:ENST00000358369.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	38	2	3.05839	3.910415	4.76244	0.00485936	0.00362147	0.0640618	0.0533855
chr4	94261622	94261722	1998060	0	+	0.57	(0.515,0.57]	chr4	199451	76	INTRON	INTRON	SMARCAD1	ENSG00000163104.18	ENST00000359052.8:ENST00000457823.6:ENST00000354268.9:ENST00000510105.5:ENST00000394961.6:ENST00000509418.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	38	2	2.9114	3.91026	4.90912	0.00826019	0.0021669	0.0813266	0.0417866
chr9	131446200	131446300	4217497	0	+	0.42	(0.408,0.44]	chr9	386753	4	SS3_PROX	SS3_PROX:INTRON	PRRC2B	ENSG00000288701.1	ENST00000684596.1:ENST00000683519.1:ENST00000682501.1	protein_coding	protein_coding	protein_coding	protein_coding	1	47	2	3.20034	3.910215	4.62009	0.00504155	0.00398025	0.0646039	0.0549214
chr5	160100455	160100555	2759610	0	-	0.49	(0.476,0.515]	chr5	260436	60	INTRON	INTRON	PWWP2A	ENSG00000170234.13	ENST00000456329.7:ENST00000523662.1:ENST00000307063.9:ENST00000520662.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	44	2	2.69967	3.910195	5.12072	0.0195838	8.42139e-4	0.109483	0.0263691
chr15	55195008	55195105	6180001	0	-	0.350515	(0.35,0.378]	chr15	589092	1	SS5_PROX	SS5_PROX:INTRON	RSL24D1	ENSG00000137876.11	ENST00000260443.9:ENST00000569386.2:ENST00000677147.1:ENST00000562895.2:ENST00000677989.1:ENST00000677730.1:ENST00000677092.1:ENST00000562993.5:ENST00000564344.5:ENST00000565854.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	99	2	3.78912	3.9100099999999998	4.0309	4.25686e-4	7.36864e-5	0.0189958	0.00714826
chr15	63513065	63513164	6041985	0	+	0.383838	(0.378,0.408]	chr15	575351	79	INTRON	INTRON	USP3	ENSG00000140455.17	ENST00000540797.5:ENST00000380324.8:ENST00000561442.5:ENST00000560070.5:ENST00000557884.5:ENST00000558157.5:ENST00000561326.5:ENST00000559873.5:ENST00000559192.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	47	2	3.60429	3.90996	4.21563	0.0315429	5.71664e-4	0.13151	0.0217398
chr6	31649927	31650027	3079001	0	-	0.44	(0.408,0.44]	chr6	286869	3	SS3_PROX	SS3_PROX:INTRON	BAG6	ENSG00000204463.14	ENST00000211379.9:ENST00000679119.1:ENST00000375964.11:ENST00000676571.1:ENST00000676615.2:ENST00000375976.8:ENST00000362049.10:ENST00000439687.6:ENST00000437771.5:ENST00000435080.5:ENST00000456622.5:ENST00000452994.5:ENST00000434444.5:ENST00000428326.5:ENST00000451898.5:ENST00000433828.5:ENST00000424480.5:ENST00000424176.5:ENST00000441054.5:ENST00000456286.5:ENST00000454165.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	48	2	3.28852	3.9097	4.53088	0.00669275	0.00287185	0.0738715	0.0474836
chr2	64003672	64003772	1139856	0	-	0.31	(0.28,0.32]	chr2	122046	193	INTRON	INTRON	VPS54	ENSG00000143952.20	ENST00000409558.8:ENST00000272322.9	protein_coding	protein_coding	protein_coding	protein_coding	1	53	2	2.32871	3.909655	5.4906	0.0581621	4.89126e-4	0.167723	0.0199693
chr19	9157631	9157710	7011415	0	+	0.278481	[0,0.28]	chr19	696245	4	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ZNF317	ENSG00000130803.15	ENST00000247956.11:ENST00000360385.7:ENST00000591278.5:ENST00000419608.2:ENST00000590152.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	70	2	2.56073	3.90944	5.25815	0.00743095	0.0066548	0.0772645	0.0703807
chr4	73246887	73246987	2160708	0	-	0.26	[0,0.28]	chr4	212799	239	INTRON	INTRON	ANKRD17	ENSG00000132466.20	ENST00000358602.9:ENST00000558247.5:ENST00000330838.10:ENST00000561029.1	protein_coding	protein_coding	protein_coding	protein_coding	3	84	2	2.22743	3.909325	5.59122	0.0097118	0.00247649	0.0875962	0.0446195
chr1	89547221	89547320	157624	0	+	0.30303	(0.28,0.32]	chr1	17165	199	INTRON	INTRON	LRRC8B	ENSG00000197147.15	ENST00000330947.7:ENST00000439853.6:ENST00000449440.5:ENST00000640258.1:ENST00000639264.1	protein_coding	protein_coding	protein_coding	protein_coding	1	51	2	3.39204	3.9091700000000005	4.4263	0.0330296	0.00188405	0.133816	0.0402736
chr1	37965259	37965358	426274	0	-	0.343434	(0.32,0.35]	chr1	51674	47	INTRON	INTRON	SF3A3	ENSG00000183431.12	ENST00000373019.5	protein_coding	protein_coding	protein_coding	protein_coding	4	84	2	2.15243	3.909045	5.66566	0.0057293	6.06695e-4	0.0681402	0.0226059
chr15	38261492	38261592	5998437	0	+	0.18	[0,0.28]	chr15	570198	79	INTRON	INTRON	SPRED1	ENSG00000166068.13	ENST00000299084.9:ENST00000561205.1:ENST00000561317.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	77	2	2.09899	3.909045	5.7191	0.0371453	3.82357e-4	0.139304	0.0176949
chr1	35342747	35342847	69030	0	+	0.53	(0.515,0.57]	chr1	8729	170	INTRON	INTRON	ZMYM4	ENSG00000146463.12	ENST00000314607.11:ENST00000441447.1	protein_coding	protein_coding	protein_coding	protein_coding	1	40	2	2.96814	3.90875	4.84936	0.00756432	0.00146032	0.0749063	0.0349875
chr11	73982320	73982420	4985939	0	-	0.57	(0.515,0.57]	chr11	470969	2	SS5_PROX	SS5_PROX:INTRON	UCP2	ENSG00000175567.11	ENST00000663595.2:ENST00000310473.9:ENST00000536983.5:ENST00000543714.5:ENST00000542615.5:ENST00000541027.5:ENST00000539330.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	40	2	2.96814	3.90875	4.84936	0.00756432	0.00146032	0.0749063	0.0349875
chr7	43723634	43723734	3526320	0	-	0.56	(0.515,0.57]	chr7	328785	118	INTRON	INTRON	COA1	ENSG00000106603.20	ENST00000415076.6:ENST00000446330.6:ENST00000446564.5:ENST00000438444.5:ENST00000223336.11:ENST00000310564.10:ENST00000415798.5:ENST00000431651.5:ENST00000451651.5:ENST00000418140.5:ENST00000448704.5:ENST00000470156.1:ENST00000457939.1:ENST00000420441.1:ENST00000478504.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	40	2	2.96814	3.90875	4.84936	0.00756432	0.00146032	0.0749063	0.0349875
chr7	100623204	100623302	3587143	0	-	0.520408	(0.515,0.57]	chr7	334486	17	INTRON	INTRON	TFR2	ENSG00000106327.13	ENST00000431692.5:ENST00000462107.1:ENST00000223051.8:ENST00000465294.5:ENST00000490084.5:ENST00000462090.5:ENST00000476304.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	40	2	2.96814	3.90875	4.84936	0.00756432	0.00146032	0.0749063	0.0349875
chr17	31251147	31251246	6592744	0	+	0.434343	(0.408,0.44]	chr17	641227	13	UTR3	UTR3:EXON_MRNA:INTRON	NF1	ENSG00000196712.20	ENST00000696138.1:ENST00000356175.7:ENST00000691014.1:ENST00000358273.9:ENST00000579081.5:ENST00000495910.6:ENST00000456735.6:ENST00000493220.5:ENST00000696139.1:ENST00000466819.5:ENST00000479614.1:ENST00000687863.1:ENST00000696140.1:ENST00000696141.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	85	2	1.53812	3.908725	6.27933	0.0501609	2.04013e-6	0.156383	8.78026e-4
chr8	131969500	131969595	3864703	0	+	0.305263	(0.28,0.32]	chr8	355711	7	INTRON	INTRON	EFR3A	ENSG00000132294.15	ENST00000254624.10:ENST00000637848.1:ENST00000519656.1	protein_coding	protein_coding	protein_coding	protein_coding	5	249	2	3.86255	3.90858	3.95461	3.4094e-5	1.04887e-6	0.00493089	5.87298e-4
chr10	50514030	50514130	4619590	0	-	0.32	(0.28,0.32]	chr10	425446	467	INTRON	INTRON	SGMS1	ENSG00000198964.14	ENST00000429490.5:ENST00000361781.7:ENST00000619438.4:ENST00000609445.5:ENST00000608287.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	52	2	2.73077	3.9084950000000003	5.08622	0.0220748	0.00227525	0.115395	0.0437013
chr12	91445649	91445749	5383672	0	-	0.3	(0.28,0.32]	chr12	513479	459	INTRON	INTRON	ENSG00000289605	ENSG00000289605.1	ENST00000685093.1	lncRNA	lncRNA	lncRNA	lncRNA	1	52	2	2.73077	3.9084950000000003	5.08622	0.0220748	0.00227525	0.115395	0.0437013
chr17	42262620	42262720	6772087	0	-	0.3	(0.28,0.32]	chr17	666964	301	INTRON	INTRON	STAT5B	ENSG00000173757.10	ENST00000293328.8:ENST00000468312.1:ENST00000415845.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	77	2	2.14534	3.908455	5.67157	0.0117054	9.48957e-4	0.0962115	0.0281755
chr2	32454054	32454154	731772	0	+	0.37	(0.35,0.378]	chr2	84398	1	SS5_PROX	SS5_PROX:INTRON	BIRC6	ENSG00000115760.15	ENST00000421745.7:ENST00000648282.1	protein_coding	protein_coding	protein_coding	protein_coding	3	70	2	2.28182	3.908265	5.53471	0.00637232	6.96925e-4	0.0724821	0.024224
chr17	21635809	21635908	6578512	0	+	0.494949	(0.476,0.515]	chr17	639549	26	INTRON	INTRON	ENSG00000260157	ENSG00000260157.3	ENST00000618784.1:ENST00000562547.3	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	3	70	2	2.72228	3.9082549999999996	5.09423	0.00204588	8.52725e-4	0.04086	0.0264928
chr17	82898071	82898170	6695695	0	+	0.575758	(0.57,1]	chr17	654985	17	INTRON	INTRON	TBCD	ENSG00000141556.22	ENST00000682479.1:ENST00000682722.1:ENST00000684464.1:ENST00000684544.1:ENST00000681983.1:ENST00000684361.1:ENST00000683184.1:ENST00000683282.1:ENST00000684408.1:ENST00000355528.9:ENST00000683444.1:ENST00000684776.1:ENST00000683041.1:ENST00000684760.1:ENST00000684349.1:ENST00000682213.1:ENST00000683009.1:ENST00000682921.1:ENST00000539345.6:ENST00000684000.1:ENST00000684188.1:ENST00000684429.1:ENST00000682610.1:ENST00000683821.1:ENST00000682654.1:ENST00000576160.6:ENST00000571712.5:ENST00000576996.5:ENST00000574801.5:ENST00000683584.1:ENST00000682099.1:ENST00000684559.1:ENST00000571316.5:ENST00000576760.5:ENST00000572984.5:ENST00000683839.1:ENST00000574975.5:ENST00000572953.5:ENST00000571796.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	37	2	2.47993	3.908005	5.33608	0.007207	3.92497e-5	0.0756278	0.00533644
chr7	157164140	157164229	3454192	0	+	0.370787	(0.35,0.378]	chr7	322900	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	UBE3C	ENSG00000009335.18	ENST00000611269.4:ENST00000348165.10:ENST00000389103.4:ENST00000430750.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	82	2	2.36666	3.9079249999999996	5.44919	0.00212276	9.66659e-4	0.0426185	0.0282401
chr16	3133036	3133132	6433243	0	-	0.40625	(0.378,0.408]	chr16	619150	18	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	ZNF213-AS1	ENSG00000263072.9	ENST00000674022.1:ENST00000673666.1:ENST00000572691.2:ENST00000664624.1:ENST00000670666.1:ENST00000653667.1:ENST00000668823.1:ENST00000657201.1:ENST00000657996.1:ENST00000576490.2:ENST00000692817.1:ENST00000668778.1:ENST00000654387.1:ENST00000686529.1:ENST00000659227.1:ENST00000691772.1:ENST00000685085.1:ENST00000686892.1:ENST00000654482.1:ENST00000571963.5:ENST00000573447.2:ENST00000571449.2:ENST00000652946.1:ENST00000658602.1:ENST00000671396.1:ENST00000576590.2:ENST00000575089.2	lncRNA	lncRNA	lncRNA	lncRNA	2	62	2	2.47752	3.907905	5.33829	0.0092831	3.59275e-4	0.0817766	0.0169207
chr1	92731903	92732002	507636	0	-	0.282828	(0.28,0.32]	chr1	59878	268	INTRON	INTRON	EVI5	ENSG00000067208.16	ENST00000370331.5:ENST00000540033.2:ENST00000684568.2:ENST00000474806.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	64	2	2.51426	3.907895	5.30153	0.00781326	0.00332518	0.0788246	0.0512081
chr10	131942983	131943080	4537292	0	+	0.28866000000000003	(0.28,0.32]	chr10	418888	18	INTRON	INTRON	PPP2R2D	ENSG00000175470.20	ENST00000455566.6:ENST00000616467.4:ENST00000482010.6:ENST00000470416.5:ENST00000517472.1:ENST00000490777.3:ENST00000649083.1:ENST00000472664.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	64	2	2.51426	3.907895	5.30153	0.00781326	0.00332518	0.0788246	0.0512081
chr2	171451540	171451638	916968	0	+	0.357143	(0.35,0.378]	chr2	100958	12	INTRON	INTRON	DCAF17	ENSG00000115827.14	ENST00000468592.5:ENST00000375255.8:ENST00000539783.5:ENST00000436317.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	48	2	2.39939	3.90777	5.41615	0.0458078	3.21724e-4	0.149888	0.0159645
chr9	131156486	131156586	4215944	0	+	0.3	(0.28,0.32]	chr9	386591	42	INTRON	INTRON	NUP214	ENSG00000126883.19	ENST00000695497.1:ENST00000695498.1:ENST00000695496.1:ENST00000695495.1:ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000651022.1:ENST00000525980.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	64	2	2.33771	3.90775	5.47779	0.0142701	0.00187048	0.103838	0.0390476
chr4	152463260	152463360	2274361	0	-	0.37	(0.35,0.378]	chr4	221120	111	INTRON	INTRON	FBXW7	ENSG00000109670.16	ENST00000281708.10:ENST00000603548.6:ENST00000604872.6:ENST00000647166.1:ENST00000643834.1:ENST00000642901.1	protein_coding	protein_coding	protein_coding	protein_coding	1	47	2	2.72497	3.907745	5.09052	0.0198266	0.00123501	0.109608	0.0326215
chr4	82863141	82863210	2179806	0	-	0.376812	(0.35,0.378]	chr4	214332	2	SS5_PROX	SS5_PROX:INTRON	SEC31A	ENSG00000138674.17	ENST00000395310.7:ENST00000513858.5:ENST00000348405.8:ENST00000448323.5:ENST00000311785.11:ENST00000509142.5:ENST00000443462.6:ENST00000500777.6:ENST00000505472.5:ENST00000355196.6:ENST00000508502.5:ENST00000264405.9:ENST00000505984.5:ENST00000508479.5:ENST00000507828.5:ENST00000512664.5:ENST00000510167.1	protein_coding	protein_coding	protein_coding	protein_coding	9	120	2	1.73435	3.90773	6.08111	0.00634272	6.68078e-5	0.0723103	0.00720358
chr2	20033019	20033111	1075542	0	-	0.23913	[0,0.28]	chr2	114881	5	UTR3	UTR3:EXON_MRNA	LAPTM4A	ENSG00000068697.7	ENST00000175091.5	protein_coding	protein_coding	protein_coding	protein_coding	1	58	2	2.20927	3.90759	5.60591	0.0794763	6.01442e-4	0.19979	0.0223465
chr22	19094181	19094281	7551732	0	-	0.48	(0.476,0.515]	chr22	771903	43	INTRON	INTRON	DGCR2	ENSG00000070413.20	ENST00000537045.5:ENST00000545799.5:ENST00000263196.12:ENST00000389262.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	93	2	3.70553	3.907545	4.10956	3.44823e-4	6.69931e-5	0.0165103	0.00721005
chr3	172793448	172793548	1563659	0	+	0.43	(0.408,0.44]	chr3	161807	65	INTRON	INTRON	ECT2	ENSG00000114346.14	ENST00000232458.9:ENST00000540509.5:ENST00000392692.8:ENST00000417960.5:ENST00000441497.6	protein_coding	protein_coding	protein_coding	protein_coding	2	92	2	3.62972	3.907455	4.18519	7.19047e-4	2.59215e-5	0.0246202	0.00400663
chr10	133461062	133461160	4540585	0	+	0.357143	(0.35,0.378]	chr10	419129	5	INTRON	INTRON	SCART1	ENSG00000214279.13	ENST00000482993.6:ENST00000463137.5:ENST00000640237.1:ENST00000488261.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	48	2	2.99044	3.9071049999999996	4.82377	0.00894806	0.00325499	0.0799922	0.0524329
chr15	22861583	22861682	5976756	0	+	0.353535	(0.35,0.378]	chr15	568434	4	INTRON	INTRON	NIPA2	ENSG00000140157.16	ENST00000398014.7:ENST00000359727.8:ENST00000674173.1:ENST00000337451.8:ENST00000674289.1:ENST00000674477.1:ENST00000398013.7:ENST00000674330.1:ENST00000539711.2:ENST00000674215.1:ENST00000674227.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	48	2	2.99044	3.9071049999999996	4.82377	0.00894806	0.00325499	0.0799922	0.0524329
chr16	8068822	8068922	6441197	0	-	0.36	(0.35,0.378]	chr16	620351	612	INTRON	INTRON	ENSG00000260289	ENSG00000260289.2	ENST00000670665.1:ENST00000654046.1:ENST00000567103.2	lncRNA	lncRNA	lncRNA	lncRNA	1	48	2	2.99044	3.9071049999999996	4.82377	0.00894806	0.00325499	0.0799922	0.0524329
chr12	132802857	132802954	5449951	0	-	0.525773	(0.515,0.57]	chr12	522069	5	INTRON	INTRON	GOLGA3	ENSG00000090615.16	ENST00000204726.9:ENST00000450791.8:ENST00000693666.1:ENST00000688114.1:ENST00000687190.1:ENST00000690511.1:ENST00000685283.1:ENST00000691696.1:ENST00000691636.1:ENST00000690897.1:ENST00000690465.1:ENST00000456883.7:ENST00000692253.1:ENST00000687502.1:ENST00000688772.1:ENST00000687479.1:ENST00000690709.1:ENST00000545875.4:ENST00000688251.1:ENST00000690573.1:ENST00000685195.1:ENST00000686425.1:ENST00000693437.1:ENST00000692831.1:ENST00000688068.1:ENST00000692951.1:ENST00000689441.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	57	2	1.86007	3.9071	5.95413	0.0526611	1.89589e-5	0.178401	0.00354138
chr2	159746337	159746437	899827	0	+	0.35	(0.32,0.35]	chr2	99544	4	SS5_PROX	SS5_PROX:INTRON	MARCHF7	ENSG00000136536.15	ENST00000539065.5:ENST00000259050.8:ENST00000409175.6:ENST00000473749.1:ENST00000409591.5:ENST00000461582.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	61	2	2.6297	3.906925	5.18415	0.00476699	0.00333629	0.0636201	0.0512081
chr5	34197200	34197300	2600058	0	-	0.35	(0.32,0.35]	chr5	247057	78	INTRON	INTRON	GUSBP18	ENSG00000215158.9	ENST00000507274.1:ENST00000508395.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	2	61	2	2.6297	3.906925	5.18415	0.00476699	0.00333629	0.0636201	0.0512081
chr3	46930024	46930124	1679561	0	-	0.41	(0.408,0.44]	chr3	171425	41	INTRON	INTRON	CCDC12	ENSG00000160799.12	ENST00000425441.5:ENST00000683445.1:ENST00000292314.6:ENST00000605358.5:ENST00000488069.5:ENST00000603885.5:ENST00000446836.5:ENST00000494655.5:ENST00000604164.5:ENST00000604181.1:ENST00000605875.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	60	2	2.26792	3.906765	5.54561	0.0179973	1.20601e-4	0.106756	0.00938389
chr19	40281519	40281617	7183715	0	-	0.612245	(0.57,1]	chr19	726536	8	INTRON	INTRON	AKT2	ENSG00000105221.18	ENST00000392038.7:ENST00000424901.5:ENST00000391844.8:ENST00000584288.5:ENST00000579047.5:ENST00000596634.5:ENST00000452077.5:ENST00000578123.5:ENST00000423127.5:ENST00000358335.9:ENST00000456441.5:ENST00000583859.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	52	2	3.69986	3.90666	4.11346	1.9698e-4	1.70324e-5	0.0122531	0.00330681
chr12	50440649	50440749	5136742	0	+	0.35	(0.32,0.35]	chr12	484411	1	SS5_PROX	SS5_PROX:INTRON	LARP4	ENSG00000161813.23	ENST00000293618.12:ENST00000429001.7:ENST00000398473.7:ENST00000522085.5:ENST00000518444.5:ENST00000518561.5:ENST00000347328.9:ENST00000520064.2:ENST00000521120.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	77	2	2.68204	3.9066350000000005	5.13123	0.00394704	0.00120582	0.0548259	0.0320487
chr11	59560328	59560424	4954112	0	-	0.53125	(0.515,0.57]	chr11	465143	2	EXON_LNCRNA	EXON_LNCRNA	LINC02739	ENSG00000255008.4	ENST00000691999.1:ENST00000685714.1:ENST00000688531.1:ENST00000661408.1:ENST00000685142.1:ENST00000693658.1:ENST00000688273.1:ENST00000688038.1:ENST00000692832.1:ENST00000687043.1:ENST00000685828.1	lncRNA	lncRNA	lncRNA	lncRNA	97	2859	2	3.9058	3.9065700000000003	3.90734	2.98165e-11	1e-12	4.47162e-7	5.45623e-8
chr19	19492912	19493012	7036229	0	+	0.43	(0.408,0.44]	chr19	701480	2	SS5_PROX	SS5_PROX:INTRON	GATAD2A	ENSG00000167491.18	ENST00000360315.7:ENST00000609040.5:ENST00000683918.1:ENST00000404158.5:ENST00000358713.7:ENST00000418032.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	45	2	2.51492	3.906355	5.29779	0.0329839	3.80479e-4	0.133816	0.0176313
chr20	58893190	58893287	7291027	0	+	0.226804	[0,0.28]	chr20	741824	2	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:INTRON	GNAS	ENSG00000087460.29	ENST00000313949.11:ENST00000371075.7:ENST00000419558.7:ENST00000371098.6:ENST00000657090.1:ENST00000453292.7:ENST00000306090.12:ENST00000491348.5:ENST00000472183.6:ENST00000462499.6:ENST00000482112.6:ENST00000663479.2:ENST00000493744.5:ENST00000490374.6:ENST00000467227.6:ENST00000676826.2:ENST00000481768.6:ENST00000371100.9:ENST00000371102.8:ENST00000464624.7:ENST00000349036.9:ENST00000423897.7:ENST00000464960.5:ENST00000488546.6:ENST00000667293.2:ENST00000481039.6:ENST00000467321.6:ENST00000477931.5:ENST00000485673.6:ENST00000470512.6:ENST00000464788.6:ENST00000469431.6:ENST00000604005.6:ENST00000478585.6:ENST00000480975.5:ENST00000480232.6:ENST00000484504.5:ENST00000683015.1:ENST00000461152.6:ENST00000371095.7:ENST00000265620.11:ENST00000354359.12:ENST00000371085.8:ENST00000468895.6:ENST00000371081.5:ENST00000338783.7:ENST00000682803.1:ENST00000488652.6:ENST00000476935.6:ENST00000492907.6:ENST00000603546.2:ENST00000684284.1:ENST00000682134.1:ENST00000682829.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	77	2	2.02265	3.9062850000000005	5.78992	0.0449017	2.85302e-4	0.149888	0.0150568
chr17	39391173	39391273	6766548	0	-	0.42	(0.408,0.44]	chr17	665497	476	INTRON	INTRON	FBXL20	ENSG00000108306.13	ENST00000264658.11:ENST00000583610.5:ENST00000394294.7:ENST00000577399.5:ENST00000647139.1	protein_coding	protein_coding	protein_coding	protein_coding	1	46	2	2.36073	3.90613	5.45153	0.0481658	1.89064e-4	0.153019	0.0119565
chr5	62310170	62310266	2362071	0	+	0.510417	(0.476,0.515]	chr5	227721	13	INTRON	INTRON	KIF2A	ENSG00000068796.19	ENST00000401507.7:ENST00000407818.8:ENST00000674632.1:ENST00000674916.1:ENST00000676413.1:ENST00000676122.1:ENST00000674751.1:ENST00000514082.6:ENST00000675085.1:ENST00000504883.2:ENST00000381103.7:ENST00000676271.1:ENST00000512541.5:ENST00000674733.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	87	2	2.27014	3.9061199999999996	5.5421	0.00172923	3.56777e-4	0.0384338	0.0175154
chr8	129998049	129998149	4063748	0	-	0.44	(0.408,0.44]	chr8	369844	267	INTRON	INTRON	CYRIB	ENSG00000153310.21	ENST00000694912.1:ENST00000523288.5:ENST00000519110.5:ENST00000401979.6:ENST00000523509.5:ENST00000517654.5:ENST00000518879.5:ENST00000522702.5:ENST00000521223.5:ENST00000518283.5:ENST00000523993.5:ENST00000519020.5:ENST00000518167.5:ENST00000522361.1:ENST00000523514.1:ENST00000518285.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	76	2	2.04842	3.906095	5.76377	0.00797555	1.64089e-4	0.0798772	0.0116917
chr15	82537826	82537921	6247402	0	-	0.378947	(0.378,0.408]	chr15	596159	11	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	RPS17	ENSG00000182774.13	ENST00000647841.1:ENST00000561157.5:ENST00000558397.1:ENST00000561068.5:ENST00000560612.1:ENST00000560639.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:non_stop_decay:nonsense_mediated_decay	3	84	2	2.76092	3.9059150000000002	5.05091	0.00118558	0.00102361	0.031662	0.029231300000000002
chr8	37869229	37869327	3935636	0	-	0.408163	(0.378,0.408]	chr8	360553	58	INTRON	INTRON	RAB11FIP1	ENSG00000156675.16	ENST00000330843.9:ENST00000287263.8:ENST00000522727.5:ENST00000523182.5:ENST00000522774.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	151	2	3.50658	3.90587	4.30516	2.97737e-5	9.63042e-6	0.00452621	0.00224473
chr3	196928379	196928473	1597055	0	+	0.43617	(0.408,0.44]	chr3	165437	1	INTRON	INTRON	SENP5	ENSG00000119231.11	ENST00000445299.6:ENST00000323460.10:ENST00000419026.5:ENST00000448068.5:ENST00000434433.1	protein_coding	protein_coding	protein_coding	protein_coding	1	45	2	2.95296	3.90584	4.85872	0.00929354	0.00221911	0.0817766	0.0435144
chr12	64431037	64431137	5153167	0	+	0.46	(0.44,0.476]	chr12	487806	1	SS3_PROX	SS3_PROX:INTRON	XPOT	ENSG00000184575.12	ENST00000332707.10:ENST00000542958.5:ENST00000538086.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	45	2	2.46135	3.9058349999999997	5.35032	0.0374637	3.02713e-4	0.140008	0.0155054
chr1	6653735	6653822	368584	0	-	0.402299	(0.378,0.408]	chr1	43331	5	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DNAJC11	ENSG00000007923.17	ENST00000451196.5:ENST00000377577.10:ENST00000690452.1:ENST00000685129.1:ENST00000472414.2:ENST00000688524.1:ENST00000686243.1:ENST00000690062.1:ENST00000689474.1:ENST00000294401.11:ENST00000426784.1:ENST00000473993.5:ENST00000685485.1:ENST00000691444.1:ENST00000688162.1:ENST00000469318.5:ENST00000485073.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	20	2	3.82294	3.905805	3.98867	0.0507	0.044228	0.162255	0.156383
chr1	37575094	37575170	424363	0	-	0.381579	(0.378,0.408]	chr1	51326	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GNL2	ENSG00000134697.13	ENST00000373062.8	protein_coding	protein_coding	protein_coding	protein_coding	0	20	2	3.82294	3.905805	3.98867	0.0507	0.044228	0.162255	0.156383
chr10	15826884	15826983	4564828	0	-	0.383838	(0.378,0.408]	chr10	421217	48	INTRON	INTRON	MINDY3	ENSG00000148481.14	ENST00000477891.1:ENST00000277632.8:ENST00000418767.5:ENST00000436829.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	20	2	3.82294	3.905805	3.98867	0.0507	0.044228	0.162255	0.156383
chr12	11072479	11072578	5268519	0	-	0.40404	(0.378,0.408]	chr12	502251	103	INTRON	INTRON	ENSG00000275778:PRH1	ENSG00000275778.2:ENSG00000231887.8	ENST00000536668.2:ENST00000535024.6:ENST00000541977.5:ENST00000546265.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	20	2	3.82294	3.905805	3.98867	0.0507	0.044228	0.162255	0.156383
chr12	11656952	11657052	5076673	0	+	0.4	(0.378,0.408]	chr12	480040	64	INTRON	INTRON	ETV6	ENSG00000139083.11	ENST00000396373.9:ENST00000541426.1:ENST00000544715.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	20	2	3.82294	3.905805	3.98867	0.0507	0.044228	0.162255	0.156383
chr12	50611282	50611382	5138213	0	+	0.38	(0.378,0.408]	chr12	484468	1057	INTRON	INTRON	DIP2B	ENSG00000066084.13	ENST00000301180.10:ENST00000549620.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	20	2	3.82294	3.905805	3.98867	0.0507	0.044228	0.162255	0.156383
chr12	77031595	77031690	5372495	0	-	0.4	(0.378,0.408]	chr12	512537	9	INTRON	INTRON	E2F7	ENSG00000165891.16	ENST00000416496.6:ENST00000322886.12:ENST00000550669.5	protein_coding	protein_coding	protein_coding	protein_coding	0	20	2	3.82294	3.905805	3.98867	0.0507	0.044228	0.162255	0.156383
chr12	122413828	122413928	5441594	0	-	0.38	(0.378,0.408]	chr12	520453	132	INTRON	INTRON	CLIP1	ENSG00000130779.22	ENST00000361654.8:ENST00000358808.6:ENST00000620786.5:ENST00000537178.5:ENST00000539080.1	protein_coding	protein_coding	protein_coding	protein_coding	0	20	2	3.82294	3.905805	3.98867	0.0507	0.044228	0.162255	0.156383
chr14	58269225	58269324	5731157	0	+	0.383838	(0.378,0.408]	chr14	544117	12	INTRON	INTRON	PSMA3	ENSG00000100567.13	ENST00000216455.9:ENST00000557087.5:ENST00000412908.6:ENST00000557508.5:ENST00000553677.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	20	2	3.82294	3.905805	3.98867	0.0507	0.044228	0.162255	0.156383
chr14	101875631	101875731	5819652	0	+	0.4	(0.378,0.408]	chr14	551879	184	INTRON	INTRON	PPP2R5C	ENSG00000078304.20	ENST00000694906.1:ENST00000422945.6:ENST00000328724.9:ENST00000350249.7:ENST00000557621.5:ENST00000556307.5:ENST00000553730.5:ENST00000334743.9:ENST00000445439.7:ENST00000557095.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	20	2	3.82294	3.905805	3.98867	0.0507	0.044228	0.162255	0.156383
chr15	72372764	72372862	6220035	0	-	0.397959	(0.378,0.408]	chr15	593807	17	INTRON	INTRON	HEXA	ENSG00000213614.11	ENST00000268097.10:ENST00000683243.1:ENST00000684263.1:ENST00000683853.1:ENST00000683548.1:ENST00000683463.1:ENST00000683587.1:ENST00000684125.1:ENST00000684231.1:ENST00000684203.1:ENST00000683735.1:ENST00000684602.1:ENST00000682721.1:ENST00000683579.1:ENST00000682843.1:ENST00000684667.1:ENST00000683133.1:ENST00000684305.1:ENST00000682461.1:ENST00000682653.1:ENST00000567411.5:ENST00000683681.1:ENST00000566304.5:ENST00000683860.1:ENST00000567027.6:ENST00000684415.1:ENST00000684520.1:ENST00000682657.1:ENST00000682061.1:ENST00000682177.1:ENST00000683884.1:ENST00000683003.1:ENST00000567159.5:ENST00000684041.1:ENST00000563762.5:ENST00000566672.5:ENST00000569410.5:ENST00000683228.1:ENST00000563908.2:ENST00000569509.5:ENST00000568260.2:ENST00000567213.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	20	2	3.82294	3.905805	3.98867	0.0507	0.044228	0.162255	0.156383
chr15	79920488	79920587	6241147	0	-	0.383838	(0.378,0.408]	chr15	595788	4	EXON_LNCRNA	EXON_LNCRNA:INTRON	ST20-MTHFS:ST20:ENSG00000278600	ENSG00000259332.3:ENSG00000180953.11:ENSG00000278600.1	ENST00000615374.5:ENST00000479961.1:ENST00000494999.1:ENST00000485386.1:ENST00000618835.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	0	20	2	3.82294	3.905805	3.98867	0.0507	0.044228	0.162255	0.156383
chr15	90807343	90807443	6101834	0	+	0.4	(0.378,0.408]	chr15	580960	26	INTRON	INTRON	BLM	ENSG00000197299.13	ENST00000355112.8:ENST00000648453.1:ENST00000681142.1:ENST00000560509.5:ENST00000559724.5:ENST00000680772.1:ENST00000560136.5:ENST00000560559.2:ENST00000558825.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	20	2	3.82294	3.905805	3.98867	0.0507	0.044228	0.162255	0.156383
chr16	2545311	2545410	6278934	0	+	0.383838	(0.378,0.408]	chr16	600618	59	INTRON	INTRON	PDPK1	ENSG00000140992.19	ENST00000566659.1:ENST00000441549.7:ENST00000268673.11:ENST00000474706.6:ENST00000342085.9:ENST00000570136.5:ENST00000492021.6:ENST00000389224.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	20	2	3.82294	3.905805	3.98867	0.0507	0.044228	0.162255	0.156383
chr16	57780451	57780549	6493759	0	-	0.387755	(0.378,0.408]	chr16	628211	1	INTRON	INTRON	KIFC3	ENSG00000140859.16	ENST00000379655.8:ENST00000445690.7:ENST00000465878.6:ENST00000421376.6:ENST00000541240.5:ENST00000543930.5:ENST00000562903.5:ENST00000564136.5:ENST00000565481.5:ENST00000562503.5:ENST00000562311.5:ENST00000569112.5:ENST00000562984.5:ENST00000567204.5:ENST00000566648.5:ENST00000561524.5:ENST00000569619.5:ENST00000566975.5:ENST00000565684.5:ENST00000567479.1:ENST00000563295.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	20	2	3.82294	3.905805	3.98867	0.0507	0.044228	0.162255	0.156383
chr17	80328877	80328977	6683761	0	+	0.38	(0.378,0.408]	chr17	653060	4	SS5_PROX	SS5_PROX:INTRON	RNF213	ENSG00000173821.20	ENST00000582970.6:ENST00000508628.6:ENST00000559070.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	20	2	3.82294	3.905805	3.98867	0.0507	0.044228	0.162255	0.156383
chr18	23371470	23371570	6957441	0	-	0.38	(0.378,0.408]	chr18	688195	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	TMEM241	ENSG00000134490.14	ENST00000581444.5:ENST00000383233.8:ENST00000473688.5:ENST00000477053.5:ENST00000460322.5:ENST00000542162.5:ENST00000578520.5:ENST00000482411.5:ENST00000497608.5:ENST00000577531.5:ENST00000582336.5:ENST00000580025.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	20	2	3.82294	3.905805	3.98867	0.0507	0.044228	0.162255	0.156383
chr2	48353348	48353448	777708	0	+	0.39	(0.378,0.408]	chr2	87477	62	INTRON	INTRON	FOXN2	ENSG00000170802.17	ENST00000413569.5:ENST00000340553.8	protein_coding	protein_coding	protein_coding	protein_coding	0	20	2	3.82294	3.905805	3.98867	0.0507	0.044228	0.162255	0.156383
chr2	121524246	121524345	1221131	0	-	0.383838	(0.378,0.408]	chr2	130026	81	INTRON	INTRON	CLASP1	ENSG00000074054.20	ENST00000263710.8:ENST00000397587.7:ENST00000541377.5:ENST00000409078.8:ENST00000455322.6:ENST00000474065.5:ENST00000485112.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	20	2	3.82294	3.905805	3.98867	0.0507	0.044228	0.162255	0.156383
chr3	43573908	43574008	1674957	0	-	0.38	(0.378,0.408]	chr3	171002	78	INTRON	INTRON	ANO10	ENSG00000160746.13	ENST00000292246.8:ENST00000350459.8:ENST00000396091.7:ENST00000414522.6:ENST00000451430.6:ENST00000427171.5	protein_coding	protein_coding	protein_coding	protein_coding	0	20	2	3.82294	3.905805	3.98867	0.0507	0.044228	0.162255	0.156383
chr3	130943191	130943291	1503417	0	+	0.39	(0.378,0.408]	chr3	157243	11	INTRON	INTRON	ATP2C1	ENSG00000017260.20	ENST00000504381.5:ENST00000505330.5:ENST00000507488.6:ENST00000508532.5:ENST00000533801.6:ENST00000510168.6:ENST00000513801.5:ENST00000504948.5:ENST00000328560.12:ENST00000428331.6:ENST00000422190.6:ENST00000359644.7:ENST00000504612.5	protein_coding	protein_coding	protein_coding	protein_coding	0	20	2	3.82294	3.905805	3.98867	0.0507	0.044228	0.162255	0.156383
chr3	171703992	171704091	1868516	0	-	0.40404	(0.378,0.408]	chr3	187102	38	INTRON	INTRON	PLD1	ENSG00000075651.17	ENST00000351298.9:ENST00000356327.9:ENST00000481505.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	20	2	3.82294	3.905805	3.98867	0.0507	0.044228	0.162255	0.156383
chr3	195934476	195934576	1896444	0	-	0.4	(0.378,0.408]	chr3	189770	99	INTRON	INTRON	ENSG00000260261	ENSG00000260261.2	ENST00000607976.2:ENST00000641484.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	20	2	3.82294	3.905805	3.98867	0.0507	0.044228	0.162255	0.156383
chr5	154225677	154225777	2524131	0	+	0.4	(0.378,0.408]	chr5	241463	53	INTRON	INTRON	GALNT10	ENSG00000164574.16	ENST00000425427.6:ENST00000297107.11:ENST00000520647.5:ENST00000377661.2:ENST00000521781.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	20	2	3.82294	3.905805	3.98867	0.0507	0.044228	0.162255	0.156383
chr5	176939336	176939436	2776251	0	-	0.4	(0.378,0.408]	chr5	261526	197	INTRON	INTRON	UIMC1	ENSG00000087206.17	ENST00000377227.8:ENST00000511320.6:ENST00000506128.5:ENST00000512031.5:ENST00000510698.2:ENST00000503273.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	20	2	3.82294	3.905805	3.98867	0.0507	0.044228	0.162255	0.156383
chr5	177241050	177241148	2554783	0	+	0.387755	(0.378,0.408]	chr5	243984	8	INTRON	INTRON	NSD1	ENSG00000165671.22	ENST00000689549.1:ENST00000354179.9:ENST00000686993.1:ENST00000689326.1:ENST00000439151.7:ENST00000689345.1:ENST00000347982.9:ENST00000687453.1:ENST00000685206.1:ENST00000688613.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	20	2	3.82294	3.905805	3.98867	0.0507	0.044228	0.162255	0.156383
chr6	15029255	15029355	3063225	0	-	0.38	(0.378,0.408]	chr6	284657	74	INTRON	INTRON	ENSG00000234261	ENSG00000234261.5	ENST00000653525.1:ENST00000656468.1:ENST00000656344.1:ENST00000437648.1	lncRNA	lncRNA	lncRNA	lncRNA	0	20	2	3.82294	3.905805	3.98867	0.0507	0.044228	0.162255	0.156383
chr7	2236354	2236450	3466978	0	-	0.395833	(0.378,0.408]	chr7	324149	4	INTRON	INTRON	MRM2	ENSG00000122687.19	ENST00000242257.14:ENST00000467199.5:ENST00000440306.3:ENST00000486040.1:ENST00000407040.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	20	2	3.82294	3.905805	3.98867	0.0507	0.044228	0.162255	0.156383
chr7	127774489	127774589	3403635	0	+	0.38	(0.378,0.408]	chr7	318134	527	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000468166.5:ENST00000465900.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	20	2	3.82294	3.905805	3.98867	0.0507	0.044228	0.162255	0.156383
chr7	143884519	143884614	3665313	0	-	0.4	(0.378,0.408]	chr7	340340	18	INTRON	INTRON	TCAF1	ENSG00000198420.10	ENST00000479870.6:ENST00000355951.2:ENST00000392900.3:ENST00000478172.1:ENST00000485416.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	20	2	3.82294	3.905805	3.98867	0.0507	0.044228	0.162255	0.156383
chrX	24833279	24833378	7633122	0	+	0.393939	(0.378,0.408]	chrX	781777	63	INTRON	INTRON	POLA1	ENSG00000101868.13	ENST00000672178.1:ENST00000379068.8:ENST00000379059.7:ENST00000611764.2:ENST00000679301.1:ENST00000494204.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	20	2	3.82294	3.905805	3.98867	0.0507	0.044228	0.162255	0.156383
chr4	39932960	39933060	2131755	0	-	0.5	(0.476,0.515]	chr4	210242	44	INTRON	INTRON	PDS5A	ENSG00000121892.15	ENST00000303538.13:ENST00000503396.5	protein_coding	protein_coding	protein_coding	protein_coding	2	59	2	2.31726	3.9058	5.49434	0.015077	1.62782e-4	0.0994339	0.0109774
chr17	66515661	66515761	6664429	0	+	0.49	(0.476,0.515]	chr17	650332	190	INTRON	INTRON	PRKCA	ENSG00000154229.12	ENST00000413366.8:ENST00000578063.5:ENST00000284384.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	44	2	2.8863	3.9057950000000003	4.92529	0.0111679	0.00180221	0.0877435	0.0392772
chr6	89799460	89799559	3161835	0	-	0.484848	(0.476,0.515]	chr6	294880	43	INTRON	INTRON	MDN1	ENSG00000112159.12	ENST00000369393.8:ENST00000629399.2:ENST00000439638.1	protein_coding	protein_coding	protein_coding	protein_coding	1	44	2	2.8863	3.9057950000000003	4.92529	0.0111679	0.00180221	0.0877435	0.0392772
chr13	20031839	20031939	5453174	0	+	0.35	(0.32,0.35]	chr13	522499	4	SS5_PROX	SS5_PROX:INTRON	ZMYM2	ENSG00000121741.17	ENST00000382874.6:ENST00000610343.5:ENST00000382871.3:ENST00000382883.7:ENST00000382870.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	50	2	3.53854	3.9057699999999995	4.273	0.0368357	9.09596e-4	0.138959	0.0277043
chr17	29448256	29448356	6586215	0	+	0.34	(0.32,0.35]	chr17	640377	443	INTRON	INTRON	TAOK1	ENSG00000160551.12	ENST00000261716.8:ENST00000583121.5:ENST00000587277.1:ENST00000536202.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	50	2	2.9451	3.90566	4.86622	0.011051	0.00354075	0.0873897	0.0546236
chr2	167864348	167864447	1258444	0	-	0.424242	(0.408,0.44]	chr2	133328	11	INTRON	INTRON	B3GALT1-AS1	ENSG00000235335.3	ENST00000430546.2:ENST00000657553.1:ENST00000670221.1:ENST00000436982.2	lncRNA	lncRNA	lncRNA	lncRNA	3	126	2	3.65444	3.905435	4.15643	4.45705e-5	3.06341e-5	0.00574725	0.00441979
chr2	61365437	61365536	1129490	0	-	0.353535	(0.35,0.378]	chr2	121448	144	INTRON	INTRON	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000453133.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	47	2	2.60341	3.9054199999999994	5.20743	0.0275785	7.78116e-4	0.123904	0.0256531
chr5	54056978	54057078	2618375	0	-	0.23	[0,0.28]	chr5	248837	88	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	52	2	3.05114	3.90539	4.75964	0.0232081	0.0075493	0.118148	0.0773151
chr9	137807998	137808097	4225418	0	+	0.424242	(0.408,0.44]	chr9	388373	43	INTRON	INTRON	EHMT1	ENSG00000181090.21	ENST00000460843.6:ENST00000636027.1:ENST00000637161.1:ENST00000637261.1:ENST00000462942.3:ENST00000637891.1:ENST00000637949.1:ENST00000486164.5:ENST00000488242.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	46	2	3.10641	3.9052550000000004	4.7041	0.00555646	0.00381677	0.0648867	0.0562562
chr11	63975552	63975638	4801827	0	+	0.453488	(0.44,0.476]	chr11	445186	4	INTRON	INTRON	COX8A	ENSG00000176340.4	ENST00000314133.4	protein_coding	protein_coding	protein_coding	protein_coding	1	45	2	3.02751	3.90522	4.78293	0.00715968	0.00292033	0.0723634	0.0494641
chr9	93529633	93529733	4158831	0	+	0.33	(0.32,0.35]	chr9	379171	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	FAM120A	ENSG00000048828.17	ENST00000277165.11:ENST00000375389.7:ENST00000446420.2:ENST00000475933.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	49	2	2.6321	3.9051599999999995	5.17822	0.0268	0.00115625	0.123349	0.0313436
chr4	25369351	25369445	1933944	0	+	0.340426	(0.32,0.35]	chr4	194176	3	UTR3	UTR3:EXON_MRNA	ZCCHC4	ENSG00000168228.16	ENST00000302874.9:ENST00000505412.1	protein_coding	protein_coding	protein_coding	protein_coding	1	49	2	2.68921	3.9051	5.12099	0.0230336	0.00143632	0.118056	0.0347139
chr11	75337311	75337410	4990014	0	-	0.40404	(0.378,0.408]	chr11	471494	253	INTRON	INTRON	ARRB1	ENSG00000137486.17	ENST00000420843.7:ENST00000360025.7:ENST00000533255.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	70	2	3.03888	3.904965	4.77105	0.00330823	0.00102794	0.0527031	0.029231300000000002
chr7	92026501	92026601	3351890	0	+	0.6	(0.57,1]	chr7	312274	31	INTRON	INTRON	AKAP9	ENSG00000127914.19	ENST00000680534.1:ENST00000680513.1:ENST00000680072.1:ENST00000679821.1:ENST00000679554.1:ENST00000356239.8:ENST00000679521.1:ENST00000680181.1:ENST00000681722.1:ENST00000680766.1:ENST00000679448.1:ENST00000681412.1:ENST00000680047.1:ENST00000679474.1:ENST00000680952.1:ENST00000679457.1:ENST00000679722.1:ENST00000680074.1:ENST00000493453.1:ENST00000674381.2:ENST00000359028.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	67	2	3.79086	3.9049300000000002	4.019	3.13356e-5	3.99829e-6	0.00467101	0.00131958
chr11	9259472	9259572	4909015	0	-	0.61	(0.57,1]	chr11	460115	141	INTRON	INTRON	DENND5A	ENSG00000184014.9	ENST00000328194.8:ENST00000681203.1:ENST00000530780.2:ENST00000679999.1:ENST00000680470.1:ENST00000680554.1:ENST00000681425.1:ENST00000679568.1:ENST00000679446.1:ENST00000680294.1:ENST00000680742.1:ENST00000680885.1:ENST00000530044.5:ENST00000526707.5:ENST00000532696.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	30	2	2.53383	3.90492	5.27601	0.02547	3.73525e-5	0.12011	0.00489903
chr5	151038210	151038306	2752127	0	-	0.520833	(0.515,0.57]	chr5	259373	9	INTRON	INTRON	TNIP1	ENSG00000145901.16	ENST00000521591.6:ENST00000520931.5:ENST00000389378.6:ENST00000610874.4:ENST00000315050.11:ENST00000523338.5:ENST00000517504.5:ENST00000610535.5:ENST00000522226.5:ENST00000518977.5:ENST00000519339.5:ENST00000524280.5:ENST00000523200.5:ENST00000521423.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	38	2	3.12663	3.904865	4.6831	0.00471288	0.00374498	0.0600108	0.0562234
chr7	6042632	6042732	3476074	0	-	0.53	(0.515,0.57]	chr7	325199	3	SS5_PROX	SS5_PROX:INTRON	EIF2AK1	ENSG00000086232.13	ENST00000199389.11:ENST00000495565.5:ENST00000474029.5:ENST00000470168.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	38	2	3.12663	3.904865	4.6831	0.00471288	0.00374498	0.0600108	0.0562234
chr5	177427793	177427893	2555863	0	+	0.45	(0.44,0.476]	chr5	244175	5	INTRON	INTRON	GRK6	ENSG00000198055.11	ENST00000502598.5:ENST00000506296.5:ENST00000511244.5:ENST00000355472.10:ENST00000507633.5:ENST00000393576.7:ENST00000528793.5:ENST00000355958.9:ENST00000512684.1	protein_coding	protein_coding	protein_coding	protein_coding	4	82	2	1.83459	3.9048249999999998	5.97506	0.0198542	1.26309e-5	0.109608	0.00264613
chr1	29069391	29069488	60528	0	+	0.298969	(0.28,0.32]	chr1	7745	2	UTR3	UTR3:EXON_MRNA:INTRON	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000647918.1:ENST00000646800.1:ENST00000644342.1:ENST00000646189.1:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000373798.5:ENST00000644600.1:ENST00000649674.1:ENST00000643173.1:ENST00000343067.9:ENST00000644780.1:ENST00000650265.1:ENST00000643604.1:ENST00000349460.9:ENST00000645111.1:ENST00000643302.1:ENST00000636666.1:ENST00000644848.1:ENST00000644470.1:ENST00000646871.1:ENST00000488277.1:ENST00000490308.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	49	2	3.22074	3.904745	4.58875	0.0230574	0.00362783	0.118056	0.055479
chr12	121341111	121341209	5437071	0	-	0.44898	(0.44,0.476]	chr12	519908	34	INTRON	INTRON	ANAPC5	ENSG00000089053.13	ENST00000261819.8:ENST00000541887.5:ENST00000534976.5:ENST00000441917.6:ENST00000539612.5:ENST00000541652.5:ENST00000544442.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	42	2	3.2029	3.9046849999999997	4.60647	0.0102339	0.00308681	0.0850389	0.0510391
chr1	180061323	180061422	268531	0	+	0.535354	(0.515,0.57]	chr1	31446	65	INTRON	INTRON	CEP350	ENSG00000135837.16	ENST00000367607.8	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	2.83188	3.90455	4.97722	0.0108207	0.00168681	0.0920575	0.0370386
chr11	43765831	43765931	4779835	0	+	0.53	(0.515,0.57]	chr11	441907	104	INTRON	INTRON	ENSG00000283341:HSD17B12	ENSG00000283341.3:ENSG00000149084.13	ENST00000532864.6:ENST00000529261.5:ENST00000527433.6:ENST00000531185.5:ENST00000278353.10:ENST00000636007.1:ENST00000637401.1:ENST00000638034.1:ENST00000527213.5:ENST00000532178.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:nonsense_mediated_decay:lncRNA:processed_transcript	1	38	2	2.83188	3.90455	4.97722	0.0108207	0.00168681	0.0920575	0.0370386
chr16	71747850	71747950	6513837	0	-	0.52	(0.515,0.57]	chr16	631096	2	SS5_PROX	SS5_PROX:INTRON	AP1G1	ENSG00000166747.13	ENST00000299980.9:ENST00000569748.5:ENST00000393512.7:ENST00000565009.5:ENST00000565642.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	38	2	2.83188	3.90455	4.97722	0.0108207	0.00168681	0.0920575	0.0370386
chr16	89342208	89342306	6542098	0	-	0.540816	(0.515,0.57]	chr16	634211	24	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000647238.1:ENST00000644045.1:ENST00000643147.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	38	2	2.83188	3.90455	4.97722	0.0108207	0.00168681	0.0920575	0.0370386
chr6	34607903	34608003	3085329	0	-	0.54	(0.515,0.57]	chr6	288679	6	INTRON	INTRON	ILRUN	ENSG00000196821.10	ENST00000374026.7:ENST00000374023.8:ENST00000374021.1	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	2.83188	3.90455	4.97722	0.0108207	0.00168681	0.0920575	0.0370386
chrX	71417432	71417531	7678759	0	+	0.555556	(0.515,0.57]	chrX	786274	8	INTRON	INTRON	TAF1	ENSG00000147133.17	ENST00000683202.1:ENST00000373790.9:ENST00000423759.6:ENST00000683782.1:ENST00000683668.1:ENST00000276072.9:ENST00000373775.8:ENST00000485087.6:ENST00000437147.8:ENST00000683358.1:ENST00000682124.1:ENST00000461764.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	38	2	2.83188	3.90455	4.97722	0.0108207	0.00168681	0.0920575	0.0370386
chrX	130094032	130094132	7887427	0	-	0.53	(0.515,0.57]	chrX	803067	121	INTRON	INTRON	ELF4	ENSG00000102034.18	ENST00000308167.10:ENST00000335997.11:ENST00000434609.1	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	2.83188	3.90455	4.97722	0.0108207	0.00168681	0.0920575	0.0370386
chr6	31541832	31541884	3078849	0	-	0.576923	(0.57,1]	chr6	286778	1	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	DDX39B	ENSG00000198563.14	ENST00000458640.5:ENST00000462256.5:ENST00000396172.6:ENST00000482195.5:ENST00000431908.5:ENST00000481456.1:ENST00000428098.5:ENST00000456662.5:ENST00000428450.5:ENST00000456976.5:ENST00000418897.5:ENST00000419020.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	54	2	3.48337	3.904505	4.32564	6.20854e-4	3.96927e-6	0.0223951	0.00143365
chr1	148982726	148982825	215616	0	+	0.313131	(0.28,0.32]	chr1	23910	14	UTR3	UTR3:EXON_MRNA:INTRON	PDE4DIP	ENSG00000178104.20	ENST00000695768.1:ENST00000695794.1:ENST00000524974.5:ENST00000585156.5:ENST00000618462.4:ENST00000695795.1:ENST00000369356.8:ENST00000369354.7:ENST00000369349.7:ENST00000369351.7:ENST00000313431.13:ENST00000529945.2:ENST00000467859.3:ENST00000530062.5:ENST00000491426.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	65	2	2.70831	3.9045	5.10069	0.00610574	0.00378444	0.0676501	0.0562562
chr17	45060627	45060711	6782201	0	-	0.583333	(0.57,1]	chr17	669024	1	UTR5	UTR5:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DCAKD	ENSG00000172992.13	ENST00000342350.10:ENST00000310604.9:ENST00000687739.1:ENST00000688897.1:ENST00000688577.1:ENST00000588499.6:ENST00000692180.1:ENST00000693065.1:ENST00000691739.1:ENST00000687525.1:ENST00000687463.1:ENST00000685712.1:ENST00000692907.1:ENST00000689764.1:ENST00000688568.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	28	2	2.91889	3.9044350000000003	4.88998	0.00719009	4.016e-4	0.0756118	0.0185763
chr21	43069213	43069312	7468101	0	-	0.626263	(0.57,1]	chr21	761072	2	INTRON	INTRON	CBS	ENSG00000160200.18	ENST00000352178.9:ENST00000359624.7:ENST00000398165.8:ENST00000398158.5:ENST00000441030.5:ENST00000470912.5:ENST00000465732.5:ENST00000488526.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	28	2	2.91889	3.9044350000000003	4.88998	0.00719009	4.016e-4	0.0756118	0.0185763
chr1	65611384	65611483	139114	0	+	0.383838	(0.378,0.408]	chr1	15568	7	INTRON	INTRON	LEPR	ENSG00000116678.20	ENST00000371060.7:ENST00000371059.7:ENST00000349533.11:ENST00000616738.4:ENST00000344610.12:ENST00000371058.1	protein_coding	protein_coding	protein_coding	protein_coding	1	43	2	2.63247	3.90437	5.17627	0.0215745	0.00208234	0.123836	0.0411801
chr16	30323704	30323804	6473254	0	-	0.39	(0.378,0.408]	chr16	625713	174	INTRON	INTRON	SMG1P5	ENSG00000183604.15	ENST00000529428.5:ENST00000411546.4:ENST00000691460.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	1	43	2	2.63247	3.90437	5.17627	0.0215745	0.00208234	0.123836	0.0411801
chr16	89790011	89790110	6544538	0	-	0.383838	(0.378,0.408]	chr16	634547	45	INTRON	INTRON	FANCA	ENSG00000187741.16	ENST00000561667.2:ENST00000389301.8:ENST00000568369.6:ENST00000564475.6:ENST00000696275.1:ENST00000696287.1:ENST00000696286.1:ENST00000696274.1:ENST00000696291.1:ENST00000696276.1:ENST00000567205.2:ENST00000567284.7:ENST00000696277.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	43	2	2.63247	3.90437	5.17627	0.0215745	0.00208234	0.123836	0.0411801
chrX	71299284	71299378	7678174	0	+	0.457447	(0.44,0.476]	chrX	786115	6	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NONO	ENSG00000147140.17	ENST00000677446.1:ENST00000677274.1:ENST00000535149.5:ENST00000420903.6:ENST00000678335.1:ENST00000678830.1:ENST00000677826.1:ENST00000473525.2:ENST00000678437.1:ENST00000676499.1:ENST00000676495.1:ENST00000678323.1:ENST00000677766.1:ENST00000679267.1:ENST00000373856.8:ENST00000677879.1:ENST00000677245.1:ENST00000373841.5:ENST00000276079.13:ENST00000679029.1:ENST00000677218.1:ENST00000676797.1:ENST00000678660.1:ENST00000677014.1:ENST00000678231.1:ENST00000474431.5:ENST00000677612.1:ENST00000677977.1:ENST00000472185.1:ENST00000450092.6:ENST00000454976.2:ENST00000490044.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	56	2	2.78129	3.90416	5.02703	0.00278015	0.00229634	0.0469265	0.0439319
chr19	24094601	24094700	7044483	0	+	0.353535	(0.35,0.378]	chr19	702396	22	INTRON	INTRON	ZNF254	ENSG00000213096.11	ENST00000613065.4:ENST00000611359.3:ENST00000616028.2:ENST00000594886.5:ENST00000339642.10:ENST00000357002.5:ENST00000595187.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	44	2	3.16371	3.90414	4.64457	0.012652	0.00383956	0.0926667	0.0562562
chr9	130601640	130601739	4213314	0	+	0.373737	(0.35,0.378]	chr9	386274	57	INTRON	INTRON	FUBP3	ENSG00000107164.16	ENST00000319725.10:ENST00000650723.1:ENST00000465949.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	44	2	3.16371	3.90414	4.64457	0.012652	0.00383956	0.0926667	0.0562562
chr14	103483443	103483540	5826645	0	+	0.247423	[0,0.28]	chr14	552919	10	INTRON	INTRON	MARK3	ENSG00000075413.19	ENST00000678179.1:ENST00000676838.1:ENST00000677348.1:ENST00000677404.1:ENST00000676694.1:ENST00000676938.1:ENST00000678619.1:ENST00000676897.1:ENST00000677214.1:ENST00000677942.1:ENST00000676830.1:ENST00000678999.1:ENST00000677228.1:ENST00000556744.2:ENST00000677104.1:ENST00000679330.1:ENST00000560417.6:ENST00000440884.7:ENST00000677035.1:ENST00000678022.1:ENST00000677560.1:ENST00000561314.6:ENST00000429436.7:ENST00000677118.1:ENST00000676564.1:ENST00000678169.1:ENST00000678175.1:ENST00000678897.1:ENST00000678278.1:ENST00000676645.1:ENST00000677829.1:ENST00000678302.1:ENST00000677133.1:ENST00000678207.1:ENST00000677360.1:ENST00000676905.1:ENST00000678343.1:ENST00000677347.1:ENST00000678071.1:ENST00000677432.1:ENST00000678237.1:ENST00000677604.1:ENST00000676518.1:ENST00000677051.1:ENST00000677857.1:ENST00000677869.1:ENST00000416682.6:ENST00000303622.13:ENST00000216288.11:ENST00000679105.1:ENST00000553942.5:ENST00000335102.9:ENST00000678091.1:ENST00000561071.5:ENST00000676745.1:ENST00000554627.5:ENST00000559274.1:ENST00000679299.1:ENST00000678661.1:ENST00000677352.1:ENST00000676944.1:ENST00000677023.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	54	2	3.2621000000000002	3.9041	4.5461	0.0365918	0.00367113	0.138959	0.056059199999999997
chr12	12138124	12138224	5269750	0	-	0.45	(0.44,0.476]	chr12	502318	4	SS5_PROX	SS5_PROX:INTRON	LRP6	ENSG00000070018.9	ENST00000261349.9:ENST00000538239.5:ENST00000543091.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	42	2	2.66433	3.9040549999999996	5.14378	0.0194358	0.00184943	0.119831	0.0388609
chr17	4677112	4677212	6712666	0	-	0.45	(0.44,0.476]	chr17	657896	3	SS3_PROX	SS3_PROX:INTRON	PELP1	ENSG00000141456.16	ENST00000572293.7:ENST00000301396.8:ENST00000436683.6:ENST00000574876.5:ENST00000573523.5:ENST00000575329.5:ENST00000570571.5:ENST00000570387.5:ENST00000575101.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	42	2	2.66433	3.9040549999999996	5.14378	0.0194358	0.00184943	0.119831	0.0388609
chr12	98538369	98538468	5198855	0	+	0.585859	(0.57,1]	chr12	491821	4	INTRON	INTRON	TMPO	ENSG00000120802.14	ENST00000556029.6:ENST00000343315.9:ENST00000393053.6:ENST00000556678.1	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	3.49517	3.90397	4.31277	0.00346264	6.03609e-4	0.0539802	0.0226059
chr6	127301813	127301913	3211436	0	-	0.31	(0.28,0.32]	chr6	298724	72	INTRON	INTRON	ECHDC1	ENSG00000093144.19	ENST00000454859.8:ENST00000531967.5:ENST00000474289.6:ENST00000368295.8:ENST00000454591.6:ENST00000528402.5:ENST00000479525.6:ENST00000368291.6:ENST00000475319.1:ENST00000430841.6:ENST00000368289.6:ENST00000417628.6:ENST00000368292.10:ENST00000436638.5:ENST00000460558.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	49	2	2.46018	3.9039149999999996	5.34765	0.0375904	0.00287138	0.156054	0.0474836
chr1	45648864	45648963	440203	0	-	0.535354	(0.515,0.57]	chr1	53337	28	INTRON	INTRON	GPBP1L1	ENSG00000159592.11	ENST00000290795.7:ENST00000355105.8:ENST00000498128.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	54	2	2.67733	3.9035349999999998	5.12974	0.00366712	4.54392e-4	0.0535094	0.0192381
chr2	73927152	73927252	811450	0	+	0.55	(0.515,0.57]	chr2	90785	1	SS5_PROX	SS5_PROX:INTRON	DGUOK	ENSG00000114956.20	ENST00000348222.3:ENST00000629438.2:ENST00000418996.5:ENST00000264093.9:ENST00000462551.1:ENST00000489796.5:ENST00000462685.1:ENST00000493055.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	54	2	2.67733	3.9035349999999998	5.12974	0.00366712	4.54392e-4	0.0535094	0.0192381
chr3	72998558	72998658	1451971	0	+	0.36	(0.35,0.378]	chr3	152950	4	SS5_PROX	SS5_PROX:INTRON	PPP4R2	ENSG00000163605.15	ENST00000482242.5:ENST00000356692.10:ENST00000470976.1:ENST00000488810.5:ENST00000495566.1:ENST00000476505.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	59	2	2.76192	3.90352	5.04512	0.00393262	0.00265021	0.0548259	0.0474328
chr15	52547343	52547443	6177095	0	-	0.37	(0.35,0.378]	chr15	588878	4	UTR3	UTR3:EXON_MRNA	ARPP19	ENSG00000128989.11	ENST00000566423.5:ENST00000249822.9	protein_coding	protein_coding	protein_coding	protein_coding	1	44	2	2.6498	3.903515	5.15723	0.0210137	0.00272706	0.122348	0.0467523
chr22	38379174	38379273	7587643	0	-	0.515152	(0.476,0.515]	chr22	776678	88	INTRON	INTRON	TPTEP2	ENSG00000244627.5	ENST00000428294.5:ENST00000407491.6:ENST00000443042.5:ENST00000457665.5:ENST00000381645.7:ENST00000443658.5:ENST00000381646.6:ENST00000455209.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	3	71	2	2.01618	3.90351	5.79084	0.0180082	3.67793e-5	0.106756	0.00485247
chr14	58279215	58279314	5904552	0	-	0.353535	(0.35,0.378]	chr14	560819	47	INTRON	INTRON	PSMA3-AS1	ENSG00000257621.9	ENST00000554360.5:ENST00000556002.5:ENST00000555275.5:ENST00000554378.5:ENST00000555707.5:ENST00000556400.5:ENST00000557660.5:ENST00000553657.5	lncRNA	lncRNA	lncRNA	lncRNA	2	58	2	2.49643	3.903505	5.31058	0.00752974	0.00160599	0.0773151	0.0364977
chr6	161056051	161056150	3025138	0	+	0.424242	(0.408,0.44]	chr6	282325	57	INTRON	INTRON	MAP3K4	ENSG00000085511.20	ENST00000366919.6:ENST00000392142.9:ENST00000542952.5:ENST00000366920.6:ENST00000348824.11:ENST00000544041.5:ENST00000490904.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	92	2	1.76523	3.9034649999999997	6.0417	0.0174785	8.54902e-6	0.10482	0.00210871
chr11	3696584	3696684	4894133	0	-	0.5	(0.476,0.515]	chr11	458777	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	NUP98	ENSG00000110713.17	ENST00000359171.8:ENST00000324932.12:ENST00000650171.1:ENST00000355260.7:ENST00000429801.5:ENST00000488828.1:ENST00000529063.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	71	2	2.13573	3.903435	5.67114	0.0119549	6.83906e-5	0.0899583	0.00684369
chr2	27691557	27691629	718903	0	+	0.277778	[0,0.28]	chr2	83573	1	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	SLC4A1AP	ENSG00000163798.14	ENST00000696012.1:ENST00000696011.1:ENST00000613517.5:ENST00000696014.1:ENST00000618046.4:ENST00000326019.11:ENST00000696013.1:ENST00000696015.1:ENST00000492196.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	51	2	2.80396	3.903295	5.00263	0.0161429	0.013055	0.109464	0.093385
chr3	17728345	17728445	1630291	0	-	0.28	[0,0.28]	chr3	168275	261	INTRON	INTRON	TBC1D5	ENSG00000131374.15	ENST00000253692.11:ENST00000696125.1:ENST00000414318.2:ENST00000429383.8:ENST00000415814.6:ENST00000452492.6:ENST00000412981.5:ENST00000428355.5:ENST00000425944.5:ENST00000430169.5:ENST00000445294.5:ENST00000414349.5:ENST00000443499.6:ENST00000444756.5:ENST00000497531.5:ENST00000443386.5:ENST00000446863.5:ENST00000444471.5:ENST00000481396.5:ENST00000423331.6:ENST00000485432.1:ENST00000471679.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	51	2	2.80396	3.903295	5.00263	0.0161429	0.013055	0.109464	0.093385
chr10	42804515	42804615	4428252	0	+	0.23	[0,0.28]	chr10	408133	19	INTRON	INTRON	BMS1	ENSG00000165733.8	ENST00000374518.6	protein_coding	protein_coding	protein_coding	protein_coding	1	51	2	2.74901	3.903245	5.05748	0.0188843	0.0113653	0.118148	0.0886611
chr8	65728931	65729027	3959873	0	-	0.229167	[0,0.28]	chr8	363325	9	INTRON	INTRON	PDE7A	ENSG00000205268.11	ENST00000401827.8:ENST00000379419.8:ENST00000396642.7:ENST00000518667.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	51	2	2.74901	3.903245	5.05748	0.0188843	0.0113653	0.118148	0.0886611
chr22	38383749	38383849	7587693	0	-	0.34	(0.32,0.35]	chr22	776694	3	SS5_PROX	SS5_PROX:INTRON	TPTEP2	ENSG00000244627.5	ENST00000428294.5:ENST00000407491.6:ENST00000443042.5:ENST00000457665.5:ENST00000381645.7:ENST00000443658.5:ENST00000381646.6:ENST00000455209.5:ENST00000454577.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	1	49	2	2.57263	3.90295	5.23327	0.0312297	9.33826e-4	0.13151	0.0278746
chr1	111155503	111155602	183882	0	+	0.323232	(0.32,0.35]	chr1	20422	71	INTRON	INTRON	CEPT1	ENSG00000134255.15	ENST00000545121.5:ENST00000498239.5:ENST00000480324.5:ENST00000476865.5:ENST00000357172.9:ENST00000460443.5:ENST00000478042.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	45	2	2.90786	3.9027700000000003	4.89768	0.00993008	0.00793135	0.0877296	0.076155
chr2	55565141	55565241	1124584	0	-	0.35	(0.32,0.35]	chr2	120610	1	SS3_PROX	SS3_PROX:INTRON	PPP4R3B	ENSG00000275052.5	ENST00000616407.2:ENST00000611717.4:ENST00000616288.4	protein_coding	protein_coding	protein_coding	protein_coding	1	45	2	2.90786	3.9027700000000003	4.89768	0.00993008	0.00793135	0.0877296	0.076155
chr20	63874016	63874116	7300775	0	+	0.35	(0.32,0.35]	chr20	743101	2	SS5_PROX	SS5_PROX:INTRON	TPD52L2	ENSG00000101150.18	ENST00000611972.4:ENST00000615907.4:ENST00000369927.8:ENST00000346249.9:ENST00000348257.9:ENST00000352482.8:ENST00000351424.8:ENST00000217121.9:ENST00000358548.4	protein_coding	protein_coding	protein_coding	protein_coding	1	45	2	2.90786	3.9027700000000003	4.89768	0.00993008	0.00793135	0.0877296	0.076155
chr4	152531549	152531649	2275045	0	-	0.34	(0.32,0.35]	chr4	221128	3	INTRON	INTRON	FBXW7	ENSG00000109670.16	ENST00000281708.10:ENST00000603548.6:ENST00000604872.6:ENST00000647166.1:ENST00000643834.1:ENST00000642901.1:ENST00000604095.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	49	2	2.74415	3.9027700000000003	5.06139	0.0198267	0.00179023	0.109608	0.0392749
chr2	58214892	58214990	1126485	0	-	0.346939	(0.32,0.35]	chr2	120938	8	INTRON	INTRON	FANCL	ENSG00000115392.13	ENST00000696400.1:ENST00000403295.8:ENST00000696492.1:ENST00000427708.7:ENST00000696314.1:ENST00000696315.1:ENST00000696454.1:ENST00000696508.1:ENST00000696548.1:ENST00000696542.1:ENST00000696319.1:ENST00000403676.6:ENST00000696433.1:ENST00000696434.1:ENST00000696499.1:ENST00000696564.1:ENST00000402135.8:ENST00000696546.1:ENST00000233741.9:ENST00000696316.1:ENST00000696378.1:ENST00000696435.1:ENST00000696493.1:ENST00000696543.1:ENST00000696544.1:ENST00000696545.1:ENST00000696565.1:ENST00000696620.1:ENST00000696621.1:ENST00000696635.1:ENST00000696364.1:ENST00000696634.1:ENST00000696317.1:ENST00000696622.1:ENST00000696467.1:ENST00000696547.1:ENST00000449070.6:ENST00000696305.1:ENST00000417361.2:ENST00000696338.1:ENST00000696361.1:ENST00000696318.1:ENST00000696371.1:ENST00000696409.1:ENST00000696410.1:ENST00000696455.1:ENST00000696468.1:ENST00000696527.1:ENST00000696567.1:ENST00000696324.1:ENST00000696566.1:ENST00000696623.1:ENST00000446381.6:ENST00000696469.1:ENST00000696624.1:ENST00000696411.1:ENST00000470506.2:ENST00000696358.1:ENST00000696373.1:ENST00000696394.1:ENST00000696320.1:ENST00000696395.1:ENST00000696341.1:ENST00000696340.1:ENST00000696374.1:ENST00000696396.1:ENST00000696342.1:ENST00000696325.1:ENST00000696399.1:ENST00000696398.1:ENST00000696306.1:ENST00000696397.1:ENST00000696360.1:ENST00000696344.1:ENST00000696343.1:ENST00000696362.1:ENST00000696528.1:ENST00000696326.1:ENST00000696625.1:ENST00000696510.1:ENST00000696438.1:ENST00000696496.1:ENST00000696509.1:ENST00000696569.1:ENST00000696457.1:ENST00000696458.1:ENST00000696473.1:ENST00000696495.1:ENST00000696415.1:ENST00000696472.1:ENST00000696459.1:ENST00000696416.1:ENST00000696530.1:ENST00000696460.1:ENST00000696570.1:ENST00000696531.1:ENST00000696307.1:ENST00000696345.1:ENST00000696377.1:ENST00000696417.1:ENST00000696594.1:ENST00000696595.1:ENST00000696379.1:ENST00000696346.1:ENST00000696380.1:ENST00000696347.1:ENST00000696461.1:ENST00000696596.1:ENST00000696549.1:ENST00000696597.1:ENST00000696550.1:ENST00000696598.1:ENST00000696321.1:ENST00000696476.1:ENST00000696477.1:ENST00000696511.1:ENST00000481670.3:ENST00000696403.1:ENST00000696551.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	45	2	2.84569	3.9027000000000003	4.95971	0.0121137	0.00663522	0.0962599	0.0703181
chr2	197493023	197493123	1307099	0	-	0.35	(0.32,0.35]	chr2	136786	3	SS5_PROX	SS5_PROX:INTRON	HSPD1	ENSG00000144381.18	ENST00000388968.8:ENST00000426480.2:ENST00000345042.6:ENST00000452200.6:ENST00000679291.1:ENST00000677403.1:ENST00000678621.1:ENST00000678545.1:ENST00000676933.1:ENST00000678170.1:ENST00000476746.6:ENST00000678969.1:ENST00000428204.6:ENST00000418022.2:ENST00000439605.2:ENST00000440114.2:ENST00000461097.2:ENST00000677792.1:ENST00000678761.1:ENST00000677913.1:ENST00000677454.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	45	2	2.84569	3.9027000000000003	4.95971	0.0121137	0.00663522	0.0962599	0.0703181
chr5	28873230	28873330	2330482	0	+	0.33	(0.32,0.35]	chr5	225135	627	INTRON	INTRON	LINC02109	ENSG00000259786.7	ENST00000658190.1	lncRNA	lncRNA	lncRNA	lncRNA	1	45	2	2.84569	3.9027000000000003	4.95971	0.0121137	0.00663522	0.0962599	0.0703181
chr5	77727214	77727314	2646743	0	-	0.34	(0.32,0.35]	chr5	251578	120	INTRON	INTRON	TBCA	ENSG00000171530.15	ENST00000380377.9:ENST00000306388.10:ENST00000520361.5:ENST00000651106.1:ENST00000518338.6:ENST00000522370.1:ENST00000520039.1	protein_coding	protein_coding	protein_coding	protein_coding	1	45	2	2.84569	3.9027000000000003	4.95971	0.0121137	0.00663522	0.0962599	0.0703181
chr18	36143660	36143757	6891568	0	+	0.360825	(0.35,0.378]	chr18	683007	3	INTRON	INTRON	ELP2	ENSG00000134759.14	ENST00000351393.10:ENST00000442325.6:ENST00000358232.11:ENST00000423854.6:ENST00000539560.5:ENST00000350494.10:ENST00000542824.5:ENST00000540799.1:ENST00000536373.5:ENST00000535093.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	58	2	2.44701	3.9026449999999997	5.35828	0.00900997	0.00135282	0.0851009	0.0336321
chr12	51141844	51141944	5325562	0	-	0.51	(0.476,0.515]	chr12	507890	163	INTRON	INTRON	TFCP2	ENSG00000135457.11	ENST00000257915.10:ENST00000685804.1:ENST00000549867.5:ENST00000548115.5:ENST00000548108.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	42	2	3.19119	3.9026050000000003	4.61402	0.00947755	0.00325748	0.0817766	0.0524329
chr3	47155734	47155834	1681522	0	-	0.49	(0.476,0.515]	chr3	171624	287	INTRON	INTRON	SETD2	ENSG00000181555.22	ENST00000691544.1:ENST00000638947.2:ENST00000409792.4:ENST00000412450.1	protein_coding	protein_coding	protein_coding	protein_coding	6	92	2	1.76217	3.9026050000000003	6.04304	0.0111778	3.44951e-5	0.0937192	0.00495154
chr14	64179273	64179372	5750173	0	+	0.494949	(0.476,0.515]	chr14	546011	14	INTRON	INTRON	SYNE2	ENSG00000054654.20	ENST00000344113.8:ENST00000358025.7:ENST00000555002.6:ENST00000554584.5:ENST00000394768.6:ENST00000555612.5:ENST00000553289.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	42	2	2.65268	3.9020550000000003	5.15143	0.0201975	0.00166579	0.121243	0.0369207
chr15	63757148	63757248	6200131	0	-	0.26	[0,0.28]	chr15	591414	4	SS3_PROX	SS3_PROX:INTRON	HERC1	ENSG00000103657.14	ENST00000443617.7:ENST00000561400.1:ENST00000559886.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	69	2	2.41169	3.901955	5.39222	0.0122872	0.00453865	0.0970106	0.0595107
chr6	17953924	17954024	3068216	0	-	0.28	[0,0.28]	chr6	285105	21	INTRON	INTRON	KIF13A	ENSG00000137177.20	ENST00000378814.9:ENST00000259711.11:ENST00000378826.6:ENST00000378843.6:ENST00000636847.1:ENST00000507576.1:ENST00000505588.1:ENST00000502704.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	93	2	1.73226	3.90189	6.07152	0.0524108	8.28707e-5	0.160429	0.00766104
chr12	62577844	62577944	5152309	0	+	0.38	(0.378,0.408]	chr12	487623	59	INTRON	INTRON	MON2	ENSG00000061987.16	ENST00000641654.1:ENST00000546600.5:ENST00000393630.8:ENST00000547095.5:ENST00000552738.5:ENST00000393629.6:ENST00000551307.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	48	2	2.2259	3.90186	5.57782	0.0662381	1.18586e-4	0.181924	0.00930884
chr1	3860219	3860319	3339	0	+	0.45	(0.44,0.476]	chr1	712	4	SS3_PROX	SS3_PROX:INTRON	DFFB	ENSG00000169598.17	ENST00000338895.7:ENST00000625756.2:ENST00000491998.5:ENST00000468793.5:ENST00000339350.7:ENST00000477548.5:ENST00000378209.8:ENST00000378206.5:ENST00000475969.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	44	2	2.74063	3.9017549999999996	5.06288	0.0176095	0.00102416	0.105143	0.0294041
chr19	4116918	4117018	7119470	0	-	0.42	(0.408,0.44]	chr19	716177	1	SS5_PROX	SS5_PROX:INTRON	MAP2K2	ENSG00000126934.15	ENST00000262948.10:ENST00000394867.9:ENST00000687128.1:ENST00000599345.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	56	2	2.78289	3.901585	5.02028	0.00303216	0.0022785	0.0493883	0.0437013
chr11	9177469	9177563	4908181	0	-	0.43617	(0.408,0.44]	chr11	460062	7	EXON_MRNA	EXON_MRNA:INTRON	DENND5A	ENSG00000184014.9	ENST00000328194.8:ENST00000681203.1:ENST00000530780.2:ENST00000680358.1:ENST00000679999.1:ENST00000680470.1:ENST00000680599.1:ENST00000680554.1:ENST00000679745.1:ENST00000680252.1:ENST00000681425.1:ENST00000681158.1:ENST00000679460.1:ENST00000679568.1:ENST00000679446.1:ENST00000680294.1:ENST00000680742.1:ENST00000680885.1:ENST00000680576.1:ENST00000530044.5:ENST00000526707.5:ENST00000681173.1:ENST00000527896.1:ENST00000530867.2:ENST00000681915.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	72	2	2.04611	3.90158	5.75705	0.016628	4.13252e-5	0.102621	0.00519938
chr12	122889679	122889775	5442514	0	-	0.427083	(0.408,0.44]	chr12	520624	12	UTR5	UTR5:EXON_MRNA:INTRON	VPS37B	ENSG00000139722.7	ENST00000267202.7:ENST00000535765.5:ENST00000371248.3	protein_coding	protein_coding	protein_coding	protein_coding	6	224	2	3.46636	3.90153	4.3367000000000004	2.9489e-6	7.21538e-7	0.00110121	5.12105e-4
chr1	54389675	54389775	463594	0	-	0.4	(0.378,0.408]	chr1	55784	330	INTRON	INTRON	SSBP3	ENSG00000157216.16	ENST00000610401.5:ENST00000357475.9:ENST00000371319.8:ENST00000417664.7:ENST00000533946.6:ENST00000371320.8:ENST00000525990.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	9	335	2	3.61456	3.901415	4.18827	2.96378e-7	1.51838e-7	2.95464e-4	1.78378e-4
chr14	34833512	34833612	5868025	0	-	0.34	(0.32,0.35]	chr14	557409	44	INTRON	INTRON	BAZ1A	ENSG00000198604.11	ENST00000358716.8:ENST00000360310.6:ENST00000382422.6:ENST00000553573.1:ENST00000553853.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	52	2	3.16237	3.901415	4.64046	0.00724767	0.00550276	0.0756327	0.0648867
chr7	95415973	95416072	3574014	0	-	0.333333	(0.32,0.35]	chr7	332944	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	PON2	ENSG00000105854.13	ENST00000222572.8:ENST00000633531.1:ENST00000455123.5:ENST00000433091.6:ENST00000633192.1:ENST00000446142.5:ENST00000469926.5:ENST00000491069.5:ENST00000490778.5:ENST00000632034.1:ENST00000493290.5:ENST00000478801.5:ENST00000460873.5:ENST00000493469.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	46	2	3.18392	3.9014050000000005	4.61889	0.0166646	0.00379806	0.102621	0.0562562
chr12	131740625	131740725	5249389	0	+	0.41	(0.408,0.44]	chr12	499173	118	INTRON	INTRON	SFSWAP	ENSG00000061936.10	ENST00000261674.9:ENST00000538548.5:ENST00000535236.5:ENST00000541286.5:ENST00000535202.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	42	2	2.66579	3.9014049999999996	5.13702	0.019342	0.00202889	0.119831	0.04086
chr8	144229699	144229798	3881152	0	+	0.414141	(0.408,0.44]	chr8	356723	61	INTRON	INTRON	MROH1	ENSG00000179832.18	ENST00000326134.10:ENST00000532255.5:ENST00000534366.5:ENST00000527552.5:ENST00000528919.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	42	2	2.66579	3.9014049999999996	5.13702	0.019342	0.00202889	0.119831	0.04086
chr16	74952141	74952239	6526958	0	-	0.479592	(0.476,0.515]	chr16	632136	2	INTRON	INTRON	WDR59	ENSG00000103091.15	ENST00000262144.11:ENST00000616369.4:ENST00000536050.5:ENST00000568462.5:ENST00000568323.5:ENST00000563111.2:ENST00000562331.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	56	2	2.26034	3.9012199999999995	5.5421	0.0166235	3.56777e-4	0.110511	0.0175154
chr17	47594884	47594980	6622247	0	+	0.541667	(0.515,0.57]	chr17	645918	20	INTRON	INTRON	NPEPPS	ENSG00000141279.17	ENST00000677710.1:ENST00000530173.6:ENST00000677226.1:ENST00000322157.9:ENST00000678461.1:ENST00000677120.1:ENST00000678909.1:ENST00000678496.1:ENST00000678262.1:ENST00000677370.1:ENST00000677664.1:ENST00000676492.1:ENST00000530514.6:ENST00000678902.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	52	2	2.96467	3.901155	4.83764	0.00279527	8.94279e-4	0.0469265	0.0273458
chr3	197166823	197166923	1902186	0	-	0.52	(0.515,0.57]	chr3	190636	47	INTRON	INTRON	DLG1	ENSG00000075711.21	ENST00000667157.1:ENST00000346964.6:ENST00000656428.1:ENST00000663148.1:ENST00000655488.1:ENST00000357674.9:ENST00000671185.1:ENST00000658701.1:ENST00000667104.1:ENST00000661336.1:ENST00000669565.1:ENST00000670455.1:ENST00000656087.1:ENST00000670366.1:ENST00000653583.1:ENST00000653795.1:ENST00000671246.1:ENST00000661453.1:ENST00000665728.1:ENST00000664564.1:ENST00000653331.1:ENST00000660432.1:ENST00000660898.1:ENST00000657381.1:ENST00000659221.1:ENST00000654737.1:ENST00000669332.1:ENST00000659716.1:ENST00000660553.1:ENST00000664991.1:ENST00000419354.5:ENST00000661440.1:ENST00000667971.1:ENST00000670935.1:ENST00000668578.1:ENST00000666007.1:ENST00000661229.1:ENST00000660237.1:ENST00000657098.1:ENST00000661013.1:ENST00000436682.6:ENST00000452595.5:ENST00000662727.1:ENST00000422288.6:ENST00000448528.6:ENST00000443183.5:ENST00000656944.1:ENST00000392382.6:ENST00000450955.5:ENST00000658155.1:ENST00000669714.1:ENST00000654733.1:ENST00000469073.2:ENST00000419227.5:ENST00000392381.7:ENST00000471733.5:ENST00000419553.6:ENST00000447466.1:ENST00000661808.1:ENST00000453607.5:ENST00000456699.6:ENST00000392380.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	53	2	2.38476	3.901155	5.41755	0.0110593	1.1703e-4	0.0873897	0.00929802
chr10	97227974	97228070	4674503	0	-	0.322917	(0.32,0.35]	chr10	430749	15	INTRON	INTRON	ARHGAP19	ENSG00000213390.11	ENST00000492211.5:ENST00000358308.7:ENST00000358531.9:ENST00000487035.1:ENST00000371027.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	61	2	2.67068	3.900955	5.13123	0.00406276	0.00394704	0.0578984	0.0548259
chr3	5137966	5138066	1353732	0	+	0.35	(0.32,0.35]	chr3	142361	90	INTRON	INTRON	ARL8B	ENSG00000134108.14	ENST00000429403.5:ENST00000256496.8:ENST00000455168.5:ENST00000444332.1:ENST00000419534.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	61	2	2.67068	3.900955	5.13123	0.00406276	0.00394704	0.0578984	0.0548259
chr5	36895286	36895386	2338615	0	+	0.36	(0.35,0.378]	chr5	225949	89	INTRON	INTRON	NIPBL	ENSG00000164190.19	ENST00000282516.13:ENST00000448238.2:ENST00000652901.1	protein_coding	protein_coding	protein_coding	protein_coding	2	60	2	2.87835	3.90095	4.92355	0.00573514	0.00160563	0.0657377	0.0367961
chr17	44065102	44065198	6778380	0	-	0.5	(0.476,0.515]	chr17	668129	8	INTRON	INTRON	LSM12	ENSG00000161654.10	ENST00000591247.6:ENST00000293406.8:ENST00000585388.2	protein_coding	protein_coding	protein_coding	protein_coding	2	59	2	2.45598	3.9009349999999996	5.34589	0.00945755	3.224e-4	0.0817766	0.0159645
chr9	85997273	85997372	4149502	0	+	0.444444	(0.44,0.476]	chr9	378467	3	INTRON	INTRON	NAA35	ENSG00000135040.16	ENST00000361671.10	protein_coding	protein_coding	protein_coding	protein_coding	4	162	2	3.85248	3.900915	3.94935	1.36921e-5	3.65694e-6	0.00292982	0.00124794
chr8	228408	228508	3883312	0	-	0.51	(0.476,0.515]	chr8	357290	86	INTRON	INTRON	RPL23AP53	ENSG00000223508.5	ENST00000606975.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	2	60	2	1.91817	3.90077	5.88337	0.0459211	7.59355e-5	0.164984	0.00777694
chr22	29283452	29283551	7496218	0	+	0.454545	(0.44,0.476]	chr22	764824	5	INTRON	INTRON	EWSR1	ENSG00000182944.18	ENST00000629659.2:ENST00000332050.10:ENST00000397938.7:ENST00000406548.5:ENST00000437155.6:ENST00000415761.5:ENST00000331029.11:ENST00000483415.5:ENST00000414183.6:ENST00000333395.10:ENST00000332035.10:ENST00000455726.5:ENST00000479135.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	76	2	3.04073	3.900705	4.76068	0.00653414	1.55969e-4	0.0699952	0.0106835
chr1	174457444	174457544	260106	0	+	0.39	(0.378,0.408]	chr1	30824	80	INTRON	INTRON	RABGAP1L	ENSG00000152061.24	ENST00000357444.10:ENST00000251507.8:ENST00000681986.1:ENST00000367690.5:ENST00000526253.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	48	2	3.19368	3.900695	4.60771	0.00567576	0.00426861	0.0678837	0.0573912
chr2	46582290	46582390	1113941	0	-	0.4	(0.378,0.408]	chr2	119445	3	INTRON	INTRON	PIGF	ENSG00000151665.13	ENST00000281382.11:ENST00000306465.8:ENST00000420164.5:ENST00000482786.5:ENST00000412717.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	42	2	2.9917	3.90069	4.80968	0.0068789	0.00679828	0.0749442	0.0711802
chr1	29093268	29093368	60773	0	+	0.36	(0.35,0.378]	chr1	7763	88	INTRON	INTRON	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000373798.5:ENST00000649674.1:ENST00000343067.9:ENST00000349460.9:ENST00000646871.1:ENST00000488277.1:ENST00000490308.2:ENST00000650132.1:ENST00000649992.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	47	2	2.53856	3.9005349999999996	5.26251	0.0326077	6.20882e-4	0.133687	0.0223951
chr13	45480559	45480644	5480892	0	+	0.364706	(0.35,0.378]	chr13	525105	3	SS5_PROX	SS5_PROX:INTRON	COG3	ENSG00000136152.15	ENST00000349995.10:ENST00000617493.1	protein_coding	protein_coding	protein_coding	protein_coding	1	47	2	2.53856	3.9005349999999996	5.26251	0.0326077	6.20882e-4	0.133687	0.0223951
chrX	66177291	66177391	7672816	0	+	0.36	(0.35,0.378]	chrX	785278	31	INTRON	INTRON	HEPH	ENSG00000089472.18	ENST00000519389.6:ENST00000683049.1:ENST00000458621.6:ENST00000684042.1:ENST00000343002.7:ENST00000336279.9:ENST00000441993.7:ENST00000419594.6:ENST00000682362.1:ENST00000425114.2:ENST00000682927.1:ENST00000683420.1:ENST00000684071.1:ENST00000684625.1:ENST00000684603.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	47	2	2.53856	3.9005349999999996	5.26251	0.0326077	6.20882e-4	0.133687	0.0223951
chr15	63211643	63211743	6040973	0	+	0.38	(0.378,0.408]	chr15	575230	215	INTRON	INTRON	RAB8B	ENSG00000166128.13	ENST00000558990.5:ENST00000558119.5:ENST00000559927.1:ENST00000321437.9:ENST00000559006.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	42	2	2.85854	3.90052	4.9425	0.0107837	0.00452675	0.0920575	0.0595107
chr7	155670984	155671082	3452159	0	+	0.397959	(0.378,0.408]	chr7	322648	54	INTRON	INTRON	RBM33	ENSG00000184863.11	ENST00000287912.7:ENST00000401878.8:ENST00000392759.7	protein_coding	protein_coding	protein_coding	protein_coding	1	42	2	2.85854	3.90052	4.9425	0.0107837	0.00452675	0.0920575	0.0595107
chr10	63352574	63352674	4634256	0	-	0.4	(0.378,0.408]	chr10	426226	835	INTRON	INTRON	JMJD1C	ENSG00000171988.20	ENST00000399262.7:ENST00000633035.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	46	2	2.95459	3.90043	4.84627	0.00957623	0.00254319	0.0820838	0.0465056
chr9	33016425	33016525	4242930	0	-	0.3	(0.28,0.32]	chr9	390004	2	SS3_PROX	SS3_PROX:INTRON	APTX	ENSG00000137074.20	ENST00000673360.1:ENST00000436040.7:ENST00000673487.1:ENST00000467331.6:ENST00000482687.6:ENST00000485479.6:ENST00000460940.6:ENST00000673248.1:ENST00000495360.6:ENST00000672281.1:ENST00000468275.6:ENST00000473270.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	66	2	2.0243	3.90038	5.77646	0.0364967	6.44045e-4	0.153759	0.0231685
chr7	65883053	65883153	3322975	0	+	0.27	[0,0.28]	chr7	309012	91	INTRON	INTRON	VKORC1L1	ENSG00000196715.7	ENST00000360768.5:ENST00000648187.1:ENST00000648179.1:ENST00000434382.2	protein_coding	protein_coding	protein_coding	protein_coding	1	53	2	2.36637	3.900325	5.43428	0.0500615	0.00400834	0.17488	0.0551303
chr10	60782196	60782295	4435805	0	+	0.232323	[0,0.28]	chr10	409170	16	INTRON	INTRON	CDK1	ENSG00000170312.17	ENST00000519078.6:ENST00000475504.6:ENST00000316629.8:ENST00000519760.1:ENST00000395284.8:ENST00000448257.6:ENST00000373809.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	111	2	2.17269	3.90031	5.62793	0.00407462	0.0022037	0.0580589	0.0417893
chr21	37254799	37254898	7462253	0	-	0.333333	(0.32,0.35]	chr21	760247	138	INTRON	INTRON	VPS26C	ENSG00000157538.14	ENST00000399000.7:ENST00000309117.11:ENST00000399001.5:ENST00000476950.5:ENST00000488368.5:ENST00000398998.1:ENST00000480452.5:ENST00000475009.1:ENST00000492514.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	45	2	2.96746	3.900165	4.83287	0.0095071	0.00815799	0.0817766	0.0810802
chr8	101202037	101202134	4006252	0	-	0.329897	(0.32,0.35]	chr8	366735	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ZNF706	ENSG00000120963.12	ENST00000520984.5:ENST00000311212.9:ENST00000519744.5:ENST00000517844.5:ENST00000520347.5:ENST00000519882.5:ENST00000521272.5:ENST00000518336.5:ENST00000523146.1:ENST00000519916.1:ENST00000523922.1:ENST00000520454.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	45	2	2.96746	3.900165	4.83287	0.0095071	0.00815799	0.0817766	0.0810802
chr19	49086661	49086761	7088383	0	+	0.53	(0.515,0.57]	chr19	709527	1	SS5_PROX	SS5_PROX:INTRON	SNRNP70	ENSG00000104852.15	ENST00000601065.5:ENST00000598984.5:ENST00000598441.6:ENST00000401730.5:ENST00000221448.9:ENST00000597936.5:ENST00000595231.5:ENST00000601411.1:ENST00000599687.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	40	2	3.03037	3.900105	4.76984	0.00608732	0.00198034	0.0676501	0.0411469
chr1	109583163	109583261	180510	0	+	0.336735	(0.32,0.35]	chr1	19814	2	INTRON	INTRON	GNAI3	ENSG00000065135.12	ENST00000369851.7	protein_coding	protein_coding	protein_coding	protein_coding	1	45	2	2.78073	3.89995	5.01917	0.01481	0.0055659	0.106702	0.0648867
chr2	156584610	156584710	896222	0	+	0.34	(0.32,0.35]	chr2	99259	18	UTR3	UTR3:EXON_MRNA:INTRON	GPD2	ENSG00000115159.16	ENST00000310454.10:ENST00000438166.7:ENST00000409861.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	45	2	2.78073	3.89995	5.01917	0.01481	0.0055659	0.106702	0.0648867
chr5	105379860	105379960	2696225	0	-	0.34	(0.32,0.35]	chr5	254248	1336	INTRON	INTRON	ENSG00000251574	ENSG00000251574.8	ENST00000503650.1	lncRNA	lncRNA	lncRNA	lncRNA	1	45	2	2.78073	3.89995	5.01917	0.01481	0.0055659	0.106702	0.0648867
chr7	67317205	67317305	3329233	0	+	0.33	(0.32,0.35]	chr7	309498	71	INTRON	INTRON	STAG3L4	ENSG00000106610.16	ENST00000416602.6:ENST00000689067.1:ENST00000691248.1:ENST00000689978.1:ENST00000687534.1:ENST00000647855.1:ENST00000689458.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	1	45	2	2.78073	3.89995	5.01917	0.01481	0.0055659	0.106702	0.0648867
chr11	46840827	46840927	4948712	0	-	0.46	(0.44,0.476]	chr11	463857	141	INTRON	INTRON	CKAP5	ENSG00000175216.15	ENST00000529230.6:ENST00000312055.9:ENST00000525248.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	74	2	1.66462	3.8997550000000003	6.13489	0.0520247	4.97756e-6	0.159508	0.00151644
chr12	45861748	45861848	5124054	0	+	0.51	(0.476,0.515]	chr12	483381	4	INTRON	INTRON	ARID2	ENSG00000189079.17	ENST00000334344.11:ENST00000422737.6:ENST00000479608.5:ENST00000444670.5:ENST00000457135.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	63	2	2.87406	3.8996750000000002	4.92529	0.00188729	0.00180221	0.0392772	0.0391691
chr1	180789548	180789648	271173	0	+	0.37	(0.35,0.378]	chr1	31626	13	INTRON	INTRON	XPR1	ENSG00000143324.14	ENST00000367590.9:ENST00000367589.3	protein_coding	protein_coding	protein_coding	protein_coding	1	45	2	3.31736	3.8996	4.48184	0.0191702	0.00211072	0.108861	0.0425419
chr7	50772763	50772862	3532474	0	-	0.363636	(0.35,0.378]	chr7	329523	104	INTRON	INTRON	GRB10	ENSG00000106070.20	ENST00000335866.7:ENST00000401949.6:ENST00000644769.1:ENST00000644879.1:ENST00000402497.6:ENST00000407526.6:ENST00000645075.2:ENST00000439044.7:ENST00000644716.1:ENST00000483819.1:ENST00000470992.5:ENST00000492265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	45	2	3.31736	3.8996	4.48184	0.0191702	0.00211072	0.108861	0.0425419
chr18	70193102	70193194	6987342	0	-	0.326087	(0.32,0.35]	chr18	691623	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	RTTN	ENSG00000176225.15	ENST00000640769.2:ENST00000255674.11:ENST00000583043.5:ENST00000581161.5:ENST00000638251.1:ENST00000640376.1:ENST00000581583.1:ENST00000640736.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	51	2	3.07935	3.8995249999999997	4.7197	0.00724137	0.00568521	0.0729826	0.0678837
chr1	205609425	205609524	623273	0	-	0.292929	(0.28,0.32]	chr1	74129	16	UTR3	UTR3:EXON_MRNA:INTRON	ELK4	ENSG00000158711.14	ENST00000616704.4:ENST00000357992.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	188	2	3.74935	3.89931	4.04927	2.00347e-4	3.96818e-6	0.0129814	0.00131753
chr3	187069091	187069190	1587582	0	+	0.474747	(0.44,0.476]	chr3	164405	41	INTRON	INTRON	ST6GAL1	ENSG00000073849.16	ENST00000169298.8:ENST00000457772.6:ENST00000455441.5:ENST00000427315.5:ENST00000677292.1:ENST00000676633.1:ENST00000448044.5:ENST00000416235.6:ENST00000448449.1:ENST00000442023.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	60	2	2.55649	3.8993	5.24211	0.00670547	4.87398e-4	0.0707084	0.0199652
chr15	85093072	85093172	6090054	0	+	0.46	(0.44,0.476]	chr15	579554	15	INTRON	INTRON	PDE8A	ENSG00000073417.15	ENST00000310298.8:ENST00000557957.5:ENST00000394553.6:ENST00000339708.9:ENST00000478717.5:ENST00000485596.5:ENST00000559742.5:ENST00000559086.5:ENST00000560789.5:ENST00000557819.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	91	2	1.7899	3.899185	6.00847	0.0158205	1.04381e-5	0.101453	0.00235341
chr6	8434284	8434384	3055106	0	-	0.29	(0.28,0.32]	chr6	284214	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	SLC35B3	ENSG00000124786.12	ENST00000644923.2:ENST00000649788.1:ENST00000648987.1:ENST00000379660.4:ENST00000648867.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	77	2	2.32052	3.899155	5.47779	0.00612675	0.00187048	0.0708525	0.0390476
chr18	80115747	80115845	6938153	0	+	0.571429	(0.57,1]	chr18	686188	54	INTRON	INTRON	ADNP2	ENSG00000101544.9	ENST00000262198.9:ENST00000560752.5:ENST00000559951.5	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	2.66801	3.8991100000000003	5.13021	0.0169968	1.21664e-4	0.110899	0.00992813
chr22	20394949	20395044	7479082	0	+	0.610526	(0.57,1]	chr22	762908	4	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ZNF74	ENSG00000185252.19	ENST00000611540.4:ENST00000403682.7:ENST00000400451.7:ENST00000357502.5:ENST00000493734.5:ENST00000420626.1:ENST00000437275.5:ENST00000405993.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	29	2	2.66801	3.8991100000000003	5.13021	0.0169968	1.21664e-4	0.110899	0.00992813
chrX	3878971	3879071	7747379	0	-	0.59	(0.57,1]	chrX	793130	108	INTRON	INTRON	ENSG00000285756	ENSG00000285756.2	ENST00000648217.1:ENST00000650456.1:ENST00000650538.1:ENST00000438107.1	lncRNA	lncRNA	lncRNA	lncRNA	1	29	2	2.66801	3.8991100000000003	5.13021	0.0169968	1.21664e-4	0.110899	0.00992813
chr20	31781246	31781346	7254089	0	+	0.43	(0.408,0.44]	chr20	736786	2	SS5_PROX	SS5_PROX:INTRON	TPX2	ENSG00000088325.16	ENST00000340513.4:ENST00000300403.11	protein_coding	protein_coding	protein_coding	protein_coding	2	61	2	2.00228	3.899065	5.79585	0.0389732	3.36399e-5	0.143072	0.00463632
chr12	112381651	112381751	5417747	0	-	0.59	(0.57,1]	chr12	517671	3	SS5_PROX	SS5_PROX:INTRON	HECTD4	ENSG00000173064.14	ENST00000550722.5:ENST00000377560.9:ENST00000682272.1:ENST00000550724.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	31	2	3.6291	3.898955	4.16881	0.00574776	3.02868e-4	0.0681402	0.0160895
chr2	190898065	190898165	959655	0	+	0.26	[0,0.28]	chr2	104167	16	INTRON	INTRON	GLS	ENSG00000115419.13	ENST00000320717.8:ENST00000338435.8:ENST00000469774.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	132	2	3.36489	3.89895	4.43301	0.00388509	1.95962e-5	0.0544269	0.00340863
chr6	150877041	150877133	2997970	0	+	0.5	(0.476,0.515]	chr6	280478	5	INTRON	INTRON	MTHFD1L	ENSG00000120254.16	ENST00000611279.4:ENST00000367321.8:ENST00000367307.8:ENST00000367308.8:ENST00000618312.4:ENST00000441122.5:ENST00000423867.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	67	2	2.01953	3.89893	5.77833	0.0163662	1.24749e-4	0.109586	0.010049
chr17	82124804	82124904	6851540	0	-	0.41	(0.408,0.44]	chr17	678956	107	INTRON	INTRON	CCDC57	ENSG00000176155.21	ENST00000694881.1:ENST00000389641.9:ENST00000694882.1:ENST00000665763.1:ENST00000578910.2:ENST00000392345.6:ENST00000583593.2:ENST00000419322.6:ENST00000392346.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	57	2	2.14732	3.89891	5.6505	0.0237354	2.70553e-4	0.129075	0.0150813
chr4	908575	908674	2094051	0	-	0.464646	(0.44,0.476]	chr4	206964	34	INTRON	INTRON	GAK	ENSG00000178950.18	ENST00000314167.9:ENST00000511163.5:ENST00000505819.5:ENST00000507580.5:ENST00000502656.5:ENST00000512325.3:ENST00000510022.5:ENST00000511229.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	55	2	2.59888	3.89884	5.1988	0.00487719	0.00151532	0.0640618	0.0352794
chr2	171702858	171702957	917859	0	+	0.444444	(0.44,0.476]	chr2	101092	96	INTRON	INTRON	DYNC1I2	ENSG00000077380.16	ENST00000340296.8:ENST00000452242.5:ENST00000397119.8:ENST00000410079.7:ENST00000438879.5:ENST00000508530.5:ENST00000409197.5:ENST00000456808.5:ENST00000409317.5:ENST00000409773.5:ENST00000411953.5:ENST00000409453.5:ENST00000445378.5:ENST00000435234.5:ENST00000443458.5:ENST00000412370.5:ENST00000425485.5:ENST00000423910.5:ENST00000430778.5:ENST00000422646.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	55	2	2.44514	3.8987049999999996	5.35227	0.0087381	8.47974e-4	0.0845538	0.0267232
chr4	73205695	73205795	2160295	0	-	0.33	(0.32,0.35]	chr4	212794	278	INTRON	INTRON	ANKRD17	ENSG00000132466.20	ENST00000358602.9:ENST00000558247.5:ENST00000330838.10:ENST00000509867.6:ENST00000561029.1:ENST00000559367.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	93	2	1.6868	3.89865	6.1105	0.0217601	9.43645e-5	0.123836	0.00865219
chr4	3078673	3078773	1917097	0	+	0.48	(0.476,0.515]	chr4	192501	32	INTRON	INTRON	HTT	ENSG00000197386.14	ENST00000680956.1:ENST00000680360.1:ENST00000681528.1:ENST00000680239.1:ENST00000649900.1:ENST00000355072.11:ENST00000680291.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	44	2	2.9435	3.898645	4.85379	0.00929849	0.00234214	0.0817766	0.0442989
chr1	156314693	156314791	566467	0	-	0.357143	(0.35,0.378]	chr1	67981	21	INTRON	INTRON	CCT3	ENSG00000163468.15	ENST00000295688.8:ENST00000368258.7:ENST00000368259.6:ENST00000368261.7:ENST00000368262.7:ENST00000472765.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	45	2	2.48657	3.898575	5.31058	0.032907	0.00160599	0.145164	0.0364977
chrX	3864583	3864676	7747234	0	-	0.473118	(0.44,0.476]	chrX	793121	3	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	ENSG00000285756	ENSG00000285756.2	ENST00000648217.1:ENST00000650456.1:ENST00000657698.1:ENST00000661656.1:ENST00000661924.1:ENST00000669719.1:ENST00000655273.1:ENST00000456563.1:ENST00000650538.1:ENST00000438107.1	lncRNA	lncRNA	lncRNA	lncRNA	3	78	2	2.67169	3.89841	5.12513	0.00140924	7.96486e-4	0.0340865	0.0258804
chr3	69785020	69785120	1448831	0	+	0.34	(0.32,0.35]	chr3	152772	56	INTRON	INTRON	MITF	ENSG00000187098.18	ENST00000687384.1:ENST00000693031.1:ENST00000352241.9:ENST00000642352.1:ENST00000495741.1:ENST00000429090.5:ENST00000433517.5:ENST00000472437.5:ENST00000448226.9	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	49	2	2.79707	3.8981450000000004	4.99922	0.0170923	0.00223907	0.104099	0.0435144
chr16	11790824	11790924	6445642	0	-	0.35	(0.32,0.35]	chr16	620971	79	INTRON	INTRON	ZC3H7A	ENSG00000122299.12	ENST00000355758.9:ENST00000571198.5:ENST00000575170.1:ENST00000576018.5:ENST00000572781.5:ENST00000574995.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	80	2	2.06533	3.898085	5.73084	0.0174225	1.07676e-4	0.10453	0.00878438
chr1	46129046	46129146	442082	0	-	0.45	(0.44,0.476]	chr1	53498	479	INTRON	INTRON	PIK3R3	ENSG00000117461.15	ENST00000372006.5:ENST00000262741.10:ENST00000420542.5:ENST00000423209.5:ENST00000493202.1:ENST00000425892.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	44	2	2.39604	3.8980200000000003	5.4	0.0404291	7.02611e-4	0.161534	0.024224
chr8	55884198	55884298	3754378	0	+	0.46	(0.44,0.476]	chr8	349249	37	INTRON	INTRON	LYN	ENSG00000254087.8	ENST00000519728.6:ENST00000520220.6	protein_coding	protein_coding	protein_coding	protein_coding	1	44	2	2.39604	3.8980200000000003	5.4	0.0404291	7.02611e-4	0.161534	0.024224
chr1	50783506	50783606	450485	0	-	0.41	(0.408,0.44]	chr1	54249	384	INTRON	INTRON	FAF1	ENSG00000185104.21	ENST00000396153.7:ENST00000487898.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	55	2	2.55103	3.89802	5.24501	0.00587353	0.00137378	0.0690758	0.0336718
chr13	44436628	44436700	5583177	0	-	0.430556	(0.408,0.44]	chr13	533638	1	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TSC22D1	ENSG00000102804.15	ENST00000501704.3:ENST00000458659.3:ENST00000611198.4:ENST00000622051.1:ENST00000261489.6:ENST00000472477.1	protein_coding	protein_coding	protein_coding	protein_coding	2	55	2	2.55103	3.89802	5.24501	0.00587353	0.00137378	0.0690758	0.0336718
chr10	11944468	11944568	4556782	0	-	0.39	(0.378,0.408]	chr10	420540	9	INTRON	INTRON	UPF2	ENSG00000151461.20	ENST00000357604.10:ENST00000356352.6:ENST00000397053.6	protein_coding	protein_coding	protein_coding	protein_coding	4	77	2	2.0848	3.8979549999999996	5.71111	0.00697927	2.59738e-4	0.0754576	0.0148796
chr4	126689766	126689866	2237607	0	-	0.36	(0.35,0.378]	chr4	219023	2243	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	7	104	2	1.63191	3.8979350000000004	6.16396	0.0149226	4.50523e-5	0.107378	0.00579854
chr2	43952196	43952296	1110167	0	-	0.35	(0.32,0.35]	chr2	119070	12	INTRON	INTRON	LRPPRC	ENSG00000138095.20	ENST00000260665.12:ENST00000682308.1:ENST00000683459.1:ENST00000683623.1:ENST00000683125.1:ENST00000683994.1:ENST00000684619.1:ENST00000683833.1:ENST00000682546.1:ENST00000682585.1:ENST00000683220.1:ENST00000683796.1:ENST00000682607.1:ENST00000683590.1:ENST00000684306.1:ENST00000683213.1:ENST00000682779.1:ENST00000682885.1:ENST00000684743.1:ENST00000683346.1:ENST00000683072.1:ENST00000682303.1:ENST00000683329.1:ENST00000682933.1:ENST00000684383.1:ENST00000682480.1:ENST00000684290.1:ENST00000684341.1:ENST00000682595.1:ENST00000683645.1:ENST00000683802.1:ENST00000681961.1:ENST00000683694.1:ENST00000683989.1:ENST00000447246.2:ENST00000409659.6:ENST00000682104.1:ENST00000683934.1:ENST00000681959.1:ENST00000684482.1:ENST00000683082.1:ENST00000467058.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	143	2	3.33795	3.897725	4.4575	1.93e-4	2.05119e-5	0.012131	0.00367736
chr4	22998109	22998209	1928097	0	+	0.36	(0.35,0.378]	chr4	193908	4	SS5_PROX	SS5_PROX:INTRON	ENSG00000248837	ENSG00000248837.7	ENST00000659942.1:ENST00000655325.1:ENST00000655182.1:ENST00000660103.1:ENST00000506425.2:ENST00000652324.1:ENST00000653008.1:ENST00000654546.1:ENST00000666412.1:ENST00000511453.5:ENST00000667179.1:ENST00000655768.1:ENST00000661585.1:ENST00000660296.1:ENST00000663529.1:ENST00000653872.1:ENST00000660370.1:ENST00000667156.1:ENST00000658109.1:ENST00000653188.1:ENST00000662431.1:ENST00000654588.1:ENST00000666579.1:ENST00000503017.2	lncRNA	lncRNA	lncRNA	lncRNA	1	47	2	2.30249	3.8975350000000004	5.49258	0.0519726	8.19894e-4	0.176696	0.0264086
chr1	89846279	89846379	159778	0	+	0.31	(0.28,0.32]	chr1	17281	21	INTRON	INTRON	LRRC8D	ENSG00000171492.14	ENST00000525774.5:ENST00000337338.9:ENST00000394593.7:ENST00000532201.5:ENST00000414841.1:ENST00000527156.1	protein_coding	protein_coding	protein_coding	protein_coding	3	85	2	2.06157	3.8975100000000005	5.73345	0.0189458	1.71668e-4	0.108861	0.0113605
chr16	21410333	21410433	6460404	0	-	0.45	(0.44,0.476]	chr16	623168	31	INTRON	INTRON	NPIPB3	ENSG00000169246.16	ENST00000504841.6:ENST00000419180.6:ENST00000448012.6:ENST00000542953.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	167	2	2.80366	3.89729	4.99092	3.06617e-4	1.26982e-7	0.0161362	1.6131e-4
chr11	3783342	3783442	4895033	0	-	0.5	(0.476,0.515]	chr11	458931	8	INTRON	INTRON	NUP98	ENSG00000110713.17	ENST00000359171.8:ENST00000324932.12:ENST00000650171.1:ENST00000355260.7:ENST00000397004.8:ENST00000397007.8:ENST00000532475.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	44	2	3.44784	3.8971599999999995	4.34648	0.0193566	0.00113238	0.108861	0.0308465
chr15	58899292	58899380	6193779	0	-	0.261364	[0,0.28]	chr15	590077	6	EXON_MRNA	EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SLTM	ENSG00000137776.17	ENST00000380516.7:ENST00000492526.5:ENST00000557924.5:ENST00000558756.5:ENST00000249736.11:ENST00000559305.5:ENST00000480144.5:ENST00000628684.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	51	2	2.90797	3.8971100000000005	4.88625	0.0173315	0.0118539	0.104099	0.0962115
chr2	190191901	190192001	957208	0	+	0.27	[0,0.28]	chr2	103926	101	INTRON	INTRON	C2orf88	ENSG00000187699.10	ENST00000490033.5:ENST00000450357.5:ENST00000396974.2:ENST00000409545.2:ENST00000409870.1:ENST00000340623.4:ENST00000443551.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	51	2	2.90797	3.8971100000000005	4.88625	0.0173315	0.0118539	0.104099	0.0962115
chr7	119679061	119679161	3628127	0	-	0.22	[0,0.28]	chr7	337315	1786	INTRON	INTRON	LINC02476	ENSG00000225546.6	ENST00000660268.1	lncRNA	lncRNA	lncRNA	lncRNA	3	173	2	3.52933	3.89711	4.26489	1.20797e-4	1.18766e-4	0.00992813	0.00931797
chr17	42502097	42502195	6611744	0	+	0.408163	(0.378,0.408]	chr17	644166	4	INTRON	INTRON	ATP6V0A1	ENSG00000033627.17	ENST00000393829.6:ENST00000343619.9:ENST00000537728.5:ENST00000264649.10:ENST00000585525.5:ENST00000544137.5:ENST00000587510.5:ENST00000586201.5:ENST00000588138.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	68	2	2.04622	3.897045	5.74787	0.0149927	2.21531e-4	0.107704	0.0136064
chr2	61478253	61478347	1130581	0	-	0.382979	(0.378,0.408]	chr2	121505	7	UTR3	UTR3:EXON_MRNA	XPO1	ENSG00000082898.19	ENST00000677110.1:ENST00000678113.1:ENST00000676553.1:ENST00000677556.1:ENST00000677814.1:ENST00000676771.1:ENST00000677803.1:ENST00000677239.1:ENST00000678790.1:ENST00000677928.1:ENST00000678182.1:ENST00000677150.1:ENST00000678172.1:ENST00000678360.1:ENST00000678081.1:ENST00000676889.1:ENST00000676783.1:ENST00000679035.1:ENST00000677422.1:ENST00000677417.1:ENST00000677813.1:ENST00000676999.1:ENST00000676667.1:ENST00000678263.1:ENST00000678877.1:ENST00000677933.1:ENST00000680228.1:ENST00000677289.1:ENST00000677190.1:ENST00000481073.6:ENST00000677476.1:ENST00000469337.2:ENST00000401558.7:ENST00000428210.5:ENST00000677290.1:ENST00000677850.1:ENST00000678640.1:ENST00000676778.1:ENST00000451765.6:ENST00000676789.1:ENST00000678741.1:ENST00000404992.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	56	2	2.56408	3.89666	5.22924	0.00566993	0.00172721	0.0678837	0.0374701
chrX	123609998	123610097	7877777	0	-	0.383838	(0.378,0.408]	chrX	802391	59	INTRON	INTRON	THOC2	ENSG00000125676.20	ENST00000448128.5:ENST00000245838.13:ENST00000441692.5:ENST00000492203.1:ENST00000497887.5:ENST00000618150.4:ENST00000432353.5:ENST00000455053.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	56	2	2.56408	3.89666	5.22924	0.00566993	0.00172721	0.0678837	0.0374701
chr16	89713907	89714005	6421605	0	+	0.397959	(0.378,0.408]	chr16	616541	7	INTRON	INTRON	VPS9D1-AS1	ENSG00000261373.1	ENST00000562866.1	lncRNA	lncRNA	lncRNA	lncRNA	3	77	2	2.45465	3.89647	5.33829	0.00381582	3.59275e-4	0.0542786	0.0169207
chr3	191542888	191542986	1591361	0	+	0.5	(0.476,0.515]	chr3	164665	30	INTRON	INTRON	ENSG00000223812	ENSG00000223812.8	ENST00000657540.1:ENST00000439804.6:ENST00000663647.1:ENST00000668751.1:ENST00000666632.1:ENST00000664732.1:ENST00000662007.1:ENST00000641158.1:ENST00000664994.1:ENST00000669884.1:ENST00000642133.1:ENST00000656380.1:ENST00000641055.1:ENST00000662578.1:ENST00000661668.1:ENST00000658347.1:ENST00000661029.1:ENST00000651548.2:ENST00000669360.1:ENST00000653490.1:ENST00000656942.1:ENST00000666456.1:ENST00000668276.1:ENST00000671595.1:ENST00000660290.1	lncRNA	lncRNA	lncRNA	lncRNA	2	59	2	2.16377	3.89635	5.62893	0.0243026	8.45697e-5	0.12011	0.00776967
chr11	3696284	3696384	4894130	0	-	0.48	(0.476,0.515]	chr11	458776	2	SS5_PROX	SS5_PROX:INTRON	NUP98	ENSG00000110713.17	ENST00000359171.8:ENST00000324932.12:ENST00000650171.1:ENST00000355260.7:ENST00000429801.5:ENST00000488828.1:ENST00000529063.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	55	2	2.58615	3.8963	5.20645	0.00515536	0.00136049	0.0650394	0.0336321
chr18	21688045	21688145	6955504	0	-	0.51	(0.476,0.515]	chr18	688091	37	INTRON	INTRON	ABHD3	ENSG00000158201.10	ENST00000289119.7:ENST00000580981.5:ENST00000578270.5:ENST00000577891.1:ENST00000579875.5:ENST00000584464.1:ENST00000577928.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	55	2	2.58615	3.8963	5.20645	0.00515536	0.00136049	0.0650394	0.0336321
chr1	34989721	34989819	419977	0	-	0.469388	(0.44,0.476]	chr1	50548	9	EXON_LNCRNA	EXON_LNCRNA:INTRON	ENSG00000271741:ZMYM6	ENSG00000271741.1:ENSG00000163867.17	ENST00000487874.1:ENST00000357182.9:ENST00000493328.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	44	2	2.60774	3.896275	5.18481	0.0255874	6.21872e-4	0.120269	0.0223951
chr2	61390879	61390978	1129748	0	-	0.474747	(0.44,0.476]	chr2	121474	72	INTRON	INTRON	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000453133.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	44	2	2.60774	3.896275	5.18481	0.0255874	6.21872e-4	0.120269	0.0223951
chr8	26345632	26345732	3716643	0	+	0.41	(0.408,0.44]	chr8	345395	53	INTRON	INTRON	PPP2R2A	ENSG00000221914.11	ENST00000380737.8:ENST00000520329.5:ENST00000518254.5:ENST00000524169.5:ENST00000518397.5:ENST00000522535.5:ENST00000665949.1:ENST00000521095.5:ENST00000660435.1:ENST00000523925.5:ENST00000524099.5:ENST00000315985.7:ENST00000519636.5:ENST00000522482.5:ENST00000521557.5:ENST00000519439.5:ENST00000521484.5:ENST00000523964.5:ENST00000667651.1:ENST00000657943.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	66	2	2.30838	3.8962700000000003	5.48416	0.00547703	5.43528e-4	0.0671198	0.0215026
chr22	50343303	50343385	7544188	0	+	0.780488	(0.57,1]	chr22	771012	1	UTR5	UTR5:EXON_MRNA	PPP6R2	ENSG00000100239.16	ENST00000359139.7:ENST00000395741.7:ENST00000612753.5:ENST00000395744.7	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	2.66438	3.896255	5.12813	0.0171563	8.62401e-5	0.104099	0.00783027
chr10	42361334	42361434	4603389	0	-	0.31	(0.28,0.32]	chr10	424088	3	SS3_PROX	SS3_PROX:INTRON	ENSG00000215146	ENSG00000215146.5	ENST00000609841.1:ENST00000650175.1:ENST00000609034.1:ENST00000609502.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	1	52	2	2.82769	3.896115	4.96454	0.0169391	0.00344078	0.103888	0.0539802
chr20	50669849	50669949	7355226	0	-	0.56	(0.515,0.57]	chr20	750067	331	INTRON	INTRON	RIPOR3	ENSG00000042062.13	ENST00000327979.8	protein_coding	protein_coding	protein_coding	protein_coding	2	50	2	2.51561	3.8960600000000003	5.27651	0.00635044	5.11033e-4	0.0723103	0.020816
chr6	43228750	43228850	3096038	0	-	0.49	(0.476,0.515]	chr6	289834	3	SS5_PROX	SS5_PROX:INTRON	DNPH1	ENSG00000112667.13	ENST00000230431.11:ENST00000509253.5:ENST00000393987.2	protein_coding	protein_coding	protein_coding	protein_coding	1	44	2	2.38442	3.8960549999999996	5.40769	0.0417472	6.23078e-4	0.161736	0.0229151
chr6	154398877	154398976	3249961	0	-	0.494949	(0.476,0.515]	chr6	301998	115	UTR3	UTR3:EXON_MRNA	CNKSR3	ENSG00000153721.19	ENST00000607772.6	protein_coding	protein_coding	protein_coding	protein_coding	1	44	2	2.38442	3.8960549999999996	5.40769	0.0417472	6.23078e-4	0.161736	0.0229151
chr9	4736257	4736356	4228880	0	-	0.323232	(0.32,0.35]	chr9	388786	133	INTRON	INTRON	AK3	ENSG00000147853.17	ENST00000381809.8:ENST00000611749.4:ENST00000359883.6:ENST00000447596.4	protein_coding	protein_coding	protein_coding	protein_coding	2	66	2	2.2664	3.89601	5.52562	0.0199969	2.76065e-4	0.109608	0.0147997
chr1	165653596	165653696	243597	0	+	0.4	(0.378,0.408]	chr1	29110	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	MGST3	ENSG00000143198.13	ENST00000367888.8:ENST00000367889.8:ENST00000495447.5:ENST00000367885.5:ENST00000367884.6:ENST00000367883.3:ENST00000627653.1:ENST00000477450.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	42	2	2.78705	3.89582	5.00459	0.0135539	0.00371142	0.101363	0.0535094
chr3	9409127	9409227	1358999	0	+	0.38	(0.378,0.408]	chr3	142655	108	INTRON	INTRON	SETD5	ENSG00000168137.20	ENST00000402198.7:ENST00000431285.5:ENST00000683012.1:ENST00000463180.5:ENST00000478475.5:ENST00000415650.5:ENST00000682536.1:ENST00000663774.1:ENST00000665872.1:ENST00000666307.1:ENST00000693430.1:ENST00000691925.1:ENST00000684606.1:ENST00000691175.1:ENST00000688835.1:ENST00000683262.1:ENST00000443339.5:ENST00000406341.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	42	2	2.78705	3.89582	5.00459	0.0135539	0.00371142	0.101363	0.0535094
chr2	61383636	61383736	1129675	0	-	0.58	(0.57,1]	chr2	121473	3	SS3_PROX	SS3_PROX:INTRON	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000453133.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	37	2	2.58733	3.895645	5.20396	0.00454222	5.65393e-5	0.0595107	0.00613846
chr2	97240965	97241065	832174	0	+	0.23	[0,0.28]	chr2	93234	3	SS3_PROX	SS3_PROX:INTRON	ANKRD36	ENSG00000135976.21	ENST00000420699.9:ENST00000652721.1:ENST00000461153.7:ENST00000421946.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	56	2	2.44242	3.8956049999999998	5.34879	0.0491024	0.00157139	0.155269	0.0365659
chr21	34837900	34838000	7446760	0	-	0.23	[0,0.28]	chr21	759836	29	INTRON	INTRON	RUNX1	ENSG00000159216.19	ENST00000300305.7:ENST00000675419.1:ENST00000437180.5:ENST00000344691.8:ENST00000482318.5:ENST00000399240.5:ENST00000358356.9:ENST00000469087.1:ENST00000399237.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	56	2	2.44242	3.8956049999999998	5.34879	0.0491024	0.00157139	0.155269	0.0365659
chr7	2368495	2368590	3269770	0	+	0.589474	(0.57,1]	chr7	303838	11	INTRON	INTRON	EIF3B	ENSG00000106263.19	ENST00000360876.9:ENST00000397011.2:ENST00000466199.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	43	2	2.58898	3.8955649999999995	5.20215	0.00134929	8.28896e-5	0.0338207	0.00812487
chr7	102376920	102377019	3371208	0	+	0.323232	(0.32,0.35]	chr7	315442	2	INTRON	INTRON	PRKRIP1:ENSG00000239969	ENSG00000128563.13:ENSG00000239969.6	ENST00000477886.5:ENST00000469763.5:ENST00000482549.5:ENST00000496391.5:ENST00000484974.5:ENST00000492837.1:ENST00000482465.5:ENST00000462601.5	protein_coding	protein_coding	protein_coding:transcribed_unprocessed_pseudogene	protein_coding:processed_transcript	4	84	2	1.76503	3.895535	6.02604	0.0240772	1.37226e-4	0.129859	0.0106749
chr1	231536912	231537012	337685	0	+	0.53	(0.515,0.57]	chr1	39314	29	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	TSNAX	ENSG00000116918.15	ENST00000413309.3:ENST00000602825.5:ENST00000366639.9:ENST00000476913.1:ENST00000475168.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	60	2	2.41022	3.89549	5.38076	0.00332441	3.24968e-4	0.0528673	0.0165891
chr4	70912942	70913042	1970611	0	+	0.56	(0.515,0.57]	chr4	197571	100	INTRON	INTRON	MOB1B	ENSG00000173542.9	ENST00000502869.5:ENST00000509041.5:ENST00000309395.7:ENST00000396051.2:ENST00000511449.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	60	2	2.41022	3.89549	5.38076	0.00332441	3.24968e-4	0.0528673	0.0165891
chr15	56950779	56950879	6032433	0	+	0.53	(0.515,0.57]	chr15	574663	293	INTRON	INTRON	TCF12	ENSG00000140262.18	ENST00000438423.6:ENST00000267811.9:ENST00000333725.10:ENST00000560190.5:ENST00000559609.5:ENST00000558908.5:ENST00000557843.5:ENST00000557947.5:ENST00000561152.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	38	2	3.19178	3.89546	4.59914	0.00616166	0.00289534	0.0676501	0.0494641
chr3	182972715	182972814	1879856	0	-	0.525253	(0.515,0.57]	chr3	187821	66	INTRON	INTRON	DCUN1D1	ENSG00000043093.15	ENST00000292782.9:ENST00000632685.1:ENST00000460412.6:ENST00000469954.5:ENST00000492563.1:ENST00000497606.5:ENST00000487822.5:ENST00000466812.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	38	2	3.19178	3.89546	4.59914	0.00616166	0.00289534	0.0676501	0.0494641
chr9	132622397	132622496	4367794	0	-	0.535354	(0.515,0.57]	chr9	401603	36	INTRON	INTRON	DDX31	ENSG00000125485.18	ENST00000372159.8	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	3.19178	3.89546	4.59914	0.00616166	0.00289534	0.0676501	0.0494641
chr19	52952320	52952391	7209349	0	-	0.408451	(0.408,0.44]	chr19	731762	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ZNF816-ZNF321P:ZNF816	ENSG00000221874.4:ENSG00000180257.14	ENST00000391777.3:ENST00000357666.8:ENST00000444460.7:ENST00000391786.6:ENST00000457013.6:ENST00000438970.6	protein_coding	protein_coding	protein_coding	protein_coding	1	43	2	3.36378	3.895455	4.42713	0.0173083	0.0016048	0.104099	0.0367961
chr3	125490461	125490561	1807562	0	-	0.44	(0.408,0.44]	chr3	181539	6	INTRON	INTRON	SNX4	ENSG00000114520.11	ENST00000251775.9:ENST00000471751.5:ENST00000473417.5:ENST00000465505.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	43	2	3.36378	3.895455	4.42713	0.0173083	0.0016048	0.104099	0.0367961
chr19	46785750	46785849	7195397	0	-	0.525253	(0.515,0.57]	chr19	729004	8	INTRON	INTRON	SLC1A5	ENSG00000105281.12	ENST00000542575.6:ENST00000412532.6	protein_coding	protein_coding	protein_coding	protein_coding	3	60	2	2.22166	3.895365	5.56907	0.00735516	1.36543e-4	0.0765982	0.0106702
chr7	100690751	100690850	3587515	0	-	0.474747	(0.44,0.476]	chr7	334643	8	INTRON	INTRON	GIGYF1	ENSG00000146830.11	ENST00000678049.1:ENST00000646601.1:ENST00000643385.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	41	2	2.9586	3.8953100000000003	4.83202	0.00758318	0.00525002	0.0773151	0.0633615
chrX	154702852	154702952	7914834	0	-	0.33	(0.32,0.35]	chrX	806091	24	INTRON	INTRON	GAB3	ENSG00000160219.12	ENST00000496390.5:ENST00000424127.3:ENST00000369575.7:ENST00000369568.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	101	2	1.60034	3.89531	6.19028	0.0221816	6.56527e-5	0.124191	0.00715734
chr12	122857393	122857482	5242106	0	+	0.460674	(0.44,0.476]	chr12	498041	3	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	HIP1R	ENSG00000130787.14	ENST00000535831.5:ENST00000253083.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	41	2	2.89047	3.8952350000000004	4.9	0.00955699	0.00423315	0.0863913	0.0572185
chr3	42604148	42604247	1406006	0	+	0.313131	(0.28,0.32]	chr3	147651	12	INTRON	INTRON	NKTR	ENSG00000114857.19	ENST00000468735.6:ENST00000460910.5:ENST00000487466.5:ENST00000429888.5:ENST00000232978.13:ENST00000442970.5:ENST00000445842.1:ENST00000478488.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	48	2	3.1268	3.895195	4.66359	0.0193496	0.00508956	0.108861	0.0646039
chr6	84750267	84750365	3149834	0	-	0.295918	(0.28,0.32]	chr6	293636	18	INTRON	INTRON	TBX18	ENSG00000112837.17	ENST00000606784.5:ENST00000369663.10:ENST00000606521.1:ENST00000606325.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	47	2	2.80157	3.895145	4.98872	0.0147132	0.00838468	0.106558	0.0774402
chr7	24605077	24605177	3291033	0	+	0.29	(0.28,0.32]	chr7	305717	75	INTRON	INTRON	PALS2	ENSG00000105926.16	ENST00000432190.5:ENST00000409761.5:ENST00000222644.10:ENST00000396475.6:ENST00000430180.5:ENST00000426450.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	47	2	2.80157	3.895145	4.98872	0.0147132	0.00838468	0.106558	0.0774402
chr16	137350	137450	6425755	0	-	0.53	(0.515,0.57]	chr16	617388	64	INTRON	INTRON	NPRL3	ENSG00000103148.17	ENST00000611875.5:ENST00000622194.4:ENST00000621703.4:ENST00000399953.7:ENST00000457916.5:ENST00000483663.5:ENST00000422814.5:ENST00000468260.5:ENST00000456528.5:ENST00000419636.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	53	2	2.53845	3.89514	5.25183	0.00632226	2.6074e-4	0.0687526	0.014326
chr12	50426663	50426763	5136594	0	+	0.39	(0.378,0.408]	chr12	484374	54	INTRON	INTRON	LARP4	ENSG00000161813.23	ENST00000550522.5:ENST00000293618.12:ENST00000429001.7:ENST00000398473.7:ENST00000548174.5:ENST00000548697.5:ENST00000548993.5:ENST00000522085.5:ENST00000518444.5:ENST00000551886.5:ENST00000523389.5:ENST00000518561.5:ENST00000347328.9:ENST00000550260.1:ENST00000517559.5:ENST00000552445.1	protein_coding	protein_coding	protein_coding	protein_coding	2	61	2	2.21238	3.8951000000000002	5.57782	0.0218124	1.18586e-4	0.11491	0.00930884
chr1	180978433	180978532	595897	0	-	0.515152	(0.476,0.515]	chr1	71220	14	INTRON	INTRON	STX6	ENSG00000135823.14	ENST00000542060.5:ENST00000258301.6:ENST00000469135.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	43	2	2.47949	3.895035	5.31058	0.0326974	9.15544e-4	0.145164	0.0278396
chr11	9144457	9144546	4907833	0	-	0.550562	(0.515,0.57]	chr11	460001	3	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DENND5A	ENSG00000184014.9	ENST00000328194.8:ENST00000529977.5:ENST00000681203.1:ENST00000530780.2:ENST00000680358.1:ENST00000679999.1:ENST00000679458.1:ENST00000531747.2:ENST00000680470.1:ENST00000680599.1:ENST00000680554.1:ENST00000679745.1:ENST00000679926.1:ENST00000679773.1:ENST00000680252.1:ENST00000525784.6:ENST00000681425.1:ENST00000681158.1:ENST00000679460.1:ENST00000681371.1:ENST00000680791.1:ENST00000679568.1:ENST00000679446.1:ENST00000681639.1:ENST00000680294.1:ENST00000680742.1:ENST00000680885.1:ENST00000680576.1:ENST00000530044.5:ENST00000527700.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	38	2	2.74772	3.894985	5.04225	0.0142192	0.00131841	0.103638	0.0331539
chr3	47470692	47470791	1682806	0	-	0.545455	(0.515,0.57]	chr3	171881	39	INTRON	INTRON	SCAP	ENSG00000114650.21	ENST00000265565.10:ENST00000441517.6:ENST00000320017.10:ENST00000648151.1:ENST00000416208.5:ENST00000416847.5:ENST00000448217.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	38	2	2.74772	3.894985	5.04225	0.0142192	0.00131841	0.103638	0.0331539
chr6	108225241	108225340	3184258	0	-	0.525253	(0.515,0.57]	chr6	296565	18	INTRON	INTRON	SNX3	ENSG00000112335.15	ENST00000230085.13:ENST00000368979.6:ENST00000426155.6:ENST00000349379.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	38	2	2.74772	3.894985	5.04225	0.0142192	0.00131841	0.103638	0.0331539
chr8	141419316	141419414	3878656	0	+	0.530612	(0.515,0.57]	chr8	356213	9	INTRON	INTRON	PTP4A3	ENSG00000184489.13	ENST00000520105.5:ENST00000521578.6:ENST00000523147.5:ENST00000329397.6:ENST00000349124.3:ENST00000680615.1:ENST00000681443.1	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	2.74772	3.894985	5.04225	0.0142192	0.00131841	0.103638	0.0331539
chrX	65533315	65533413	7827641	0	-	0.44898	(0.44,0.476]	chrX	798741	8	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	LAS1L	ENSG00000001497.18	ENST00000677056.1:ENST00000677969.1:ENST00000374811.8:ENST00000374807.9:ENST00000677834.1:ENST00000484069.1:ENST00000374804.9:ENST00000677986.1:ENST00000677087.1:ENST00000679056.1:ENST00000679261.1:ENST00000678074.1:ENST00000678705.1:ENST00000679277.1:ENST00000677154.1:ENST00000678547.1:ENST00000678956.1:ENST00000679116.1:ENST00000678848.1:ENST00000678173.1:ENST00000676986.1:ENST00000678823.1:ENST00000678570.1:ENST00000678602.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	59	2	2.33899	3.89498	5.45097	0.0142027	1.90652e-4	0.0959987	0.0120089
chr8	140988735	140988834	4079953	0	-	0.333333	(0.32,0.35]	chr8	370590	42	INTRON	INTRON	PTK2	ENSG00000169398.20	ENST00000696786.1:ENST00000522684.5:ENST00000395218.3:ENST00000521059.5:ENST00000519993.5:ENST00000340930.7:ENST00000524357.5:ENST00000521791.5:ENST00000523067.5:ENST00000520828.5:ENST00000519881.5:ENST00000520892.5:ENST00000517453.5:ENST00000520045.5:ENST00000521332.5:ENST00000524040.5:ENST00000523679.1:ENST00000524257.5:ENST00000523797.1:ENST00000519635.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	45	2	3.0247	3.894855	4.76501	0.0114287	0.00671684	0.0886611	0.0738715
chr11	87278344	87278444	4845221	0	+	0.41	(0.408,0.44]	chr11	451872	10	INTRON	INTRON	TMEM135	ENSG00000166575.17	ENST00000340353.11:ENST00000305494.6:ENST00000532959.5	protein_coding	protein_coding	protein_coding	protein_coding	1	45	2	3.00595	3.8947149999999997	4.78348	0.00781452	0.00290352	0.0759016	0.0494641
chr17	39442063	39442162	6767068	0	-	0.434343	(0.408,0.44]	chr17	665589	10	INTRON	INTRON	MED1	ENSG00000125686.12	ENST00000394287.7:ENST00000300651.11:ENST00000577831.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	45	2	3.00595	3.8947149999999997	4.78348	0.00781452	0.00290352	0.0759016	0.0494641
chr22	19840645	19840745	7555486	0	-	0.53	(0.515,0.57]	chr22	772443	189	INTRON	INTRON	GNB1L	ENSG00000185838.14	ENST00000329517.11:ENST00000403325.5:ENST00000405009.5:ENST00000460402.5:ENST00000481086.1:ENST00000453108.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	80	2	3.71942	3.89459	4.06976	2.61221e-4	5.5596e-5	0.014326	0.00651834
chr15	30666496	30666596	5992686	0	+	0.32	(0.28,0.32]	chr15	569767	73	INTRON	INTRON	ENSG00000284906:ENSG00000285035:ENSG00000187951	ENSG00000284906.3:ENSG00000285035.2:ENSG00000187951.11	ENST00000685924.1:ENST00000563110.6:ENST00000566548.5:ENST00000602616.6:ENST00000562954.1	protein_coding	protein_coding	protein_coding:lncRNA:transcribed_unprocessed_pseudogene	protein_coding:nonsense_mediated_decay:lncRNA:processed_transcript	4	90	2	2.31129	3.89454	5.47779	0.00319044	0.00187048	0.0520345	0.0390476
chr16	30280962	30281061	6472809	0	-	0.323232	(0.32,0.35]	chr16	625636	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SMG1P5	ENSG00000183604.15	ENST00000529428.5	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	1	45	2	2.71269	3.8944900000000002	5.07629	0.0181461	0.00468114	0.114853	0.0600108
chr1	1736992	1737091	361346	0	-	0.515152	(0.476,0.515]	chr1	42123	19	EXON_LNCRNA	EXON_LNCRNA:INTRON	ENSG00000268575:SLC35E2A	ENSG00000268575.1:ENSG00000215790.8	ENST00000598846.1:ENST00000647043.1:ENST00000246421.4:ENST00000643943.1	lncRNA	lncRNA	lncRNA:transcribed_unprocessed_pseudogene	lncRNA:processed_transcript:transcribed_unprocessed_pseudogene	5	84	2	1.80755	3.894415	5.98128	0.0131326	4.70386e-5	0.0999551	0.00593131
chr19	34191686	34191786	7050995	0	+	0.42	(0.408,0.44]	chr19	703187	186	INTRON	INTRON	LSM14A	ENSG00000257103.9	ENST00000544216.8:ENST00000589878.5:ENST00000540746.6:ENST00000433627.9:ENST00000586157.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	66	2	2.3494	3.8944	5.4394	0.00462504	6.50925e-4	0.062717	0.0232863
chr17	19188314	19188414	6570509	0	+	0.55	(0.515,0.57]	chr17	638907	4	EXON_SMALL	EXON_SMALL	SNORD3A	ENSG00000263934.5	ENST00000584923.1	snoRNA	snoRNA	snoRNA	snoRNA	28	674	2	3.25084	3.894245	4.53765	1.84396e-8	1.67626e-9	4.35647e-5	1.12005e-5
chr22	47839411	47839510	7541455	0	+	0.353535	(0.35,0.378]	chr22	770774	85	INTRON	INTRON	ENSG00000224271	ENSG00000224271.7	ENST00000664761.1:ENST00000650683.1:ENST00000651536.1:ENST00000652656.1:ENST00000651445.1:ENST00000423737.5:ENST00000650660.1:ENST00000651056.1:ENST00000652611.1:ENST00000652399.1:ENST00000652123.1:ENST00000652505.1:ENST00000652030.2:ENST00000651403.1:ENST00000652228.1:ENST00000651124.1:ENST00000651003.1:ENST00000651948.2:ENST00000651293.1:ENST00000651939.1:ENST00000650787.1:ENST00000651517.1:ENST00000651638.1:ENST00000670853.1:ENST00000652080.1:ENST00000651294.1:ENST00000652164.1:ENST00000651538.1:ENST00000651033.1:ENST00000651584.1	lncRNA	lncRNA	lncRNA	lncRNA	1	43	2	2.92952	3.89411	4.8587	0.00881187	0.00695662	0.084878	0.0718189
chr7	53793443	53793542	3534084	0	-	0.363636	(0.35,0.378]	chr7	329607	122	INTRON	INTRON	LINC01446	ENSG00000205628.5	ENST00000380970.2:ENST00000663138.2:ENST00000660945.1:ENST00000662931.1:ENST00000661502.1:ENST00000670945.1:ENST00000666213.1:ENST00000663312.1:ENST00000660413.1:ENST00000652440.1:ENST00000665927.1:ENST00000659794.1:ENST00000670507.1:ENST00000659481.1:ENST00000659250.1:ENST00000662259.1:ENST00000669638.1:ENST00000650830.1:ENST00000668489.1:ENST00000652104.1:ENST00000656718.1:ENST00000663872.1:ENST00000660958.1:ENST00000656885.1:ENST00000654050.1:ENST00000651858.1:ENST00000651506.1:ENST00000658338.1:ENST00000651951.1	lncRNA	lncRNA	lncRNA	lncRNA	1	43	2	2.92952	3.89411	4.8587	0.00881187	0.00695662	0.084878	0.0718189
chr1	77592654	77592754	492557	0	-	0.26	[0,0.28]	chr1	58292	76	INTRON	INTRON	ZZZ3	ENSG00000036549.13	ENST00000370801.8:ENST00000481346.5:ENST00000476275.5:ENST00000370798.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	52	2	3.09587	3.89389	4.69191	0.0269474	0.00651565	0.123442	0.0735232
chr17	64501911	64502004	6815827	0	-	0.322581	(0.32,0.35]	chr17	673799	8	UTR3	UTR3:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DDX5	ENSG00000108654.16	ENST00000225792.10:ENST00000678890.1:ENST00000676601.1:ENST00000676575.1:ENST00000676969.1:ENST00000678810.1:ENST00000585317.2:ENST00000678110.1:ENST00000580026.6:ENST00000678757.1:ENST00000676581.1:ENST00000676785.1:ENST00000585111.2:ENST00000577922.6:ENST00000450599.7:ENST00000678814.1:ENST00000677726.1:ENST00000583212.2:ENST00000579461.2:ENST00000540698.6:ENST00000581230.5:ENST00000581693.5:ENST00000582326.2:ENST00000578491.2:ENST00000578804.5:ENST00000578758.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	470	2	3.53899	3.89376	4.24853	1.24995e-6	1.76055e-8	7.24623e-4	4.82982e-5
chr3	179375641	179375741	1567220	0	+	0.35	(0.32,0.35]	chr3	162121	3	SS5_PROX	SS5_PROX:INTRON	MFN1	ENSG00000171109.19	ENST00000471841.6:ENST00000357390.8:ENST00000263969.9:ENST00000474903.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	61	2	2.71053	3.8934100000000003	5.07629	0.00468114	0.00346747	0.0600108	0.0539802
chr8	28812461	28812561	3928397	0	-	0.37	(0.35,0.378]	chr8	359764	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	INTS9	ENSG00000104299.15	ENST00000416984.6:ENST00000521022.6:ENST00000523303.5:ENST00000521777.5:ENST00000522363.5:ENST00000520983.5:ENST00000523436.5:ENST00000518510.5:ENST00000524081.5:ENST00000523076.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	48	2	3.03814	3.89337	4.7486	0.00767003	0.00418965	0.075364	0.0591344
chr19	16643808	16643905	7150620	0	-	0.484536	(0.476,0.515]	chr19	722442	20	INTRON	INTRON	SMIM7	ENSG00000214046.9	ENST00000465250.6:ENST00000481671.6:ENST00000594662.5:ENST00000597781.5:ENST00000598278.5:ENST00000593409.5	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	1	41	2	2.94692	3.8932700000000002	4.83962	0.00794331	0.00480934	0.0797304	0.0602209
chr7	129369650	129369750	3410920	0	+	0.48	(0.476,0.515]	chr7	318785	7	INTRON	INTRON	AHCYL2	ENSG00000158467.17	ENST00000325006.8:ENST00000446544.6:ENST00000461161.5:ENST00000460109.5:ENST00000474594.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	41	2	2.94692	3.8932700000000002	4.83962	0.00794331	0.00480934	0.0797304	0.0602209
chr12	112355689	112355789	5417487	0	-	0.48	(0.476,0.515]	chr12	517670	356	INTRON	INTRON	HECTD4	ENSG00000173064.14	ENST00000550722.5:ENST00000377560.9:ENST00000682272.1:ENST00000550724.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	41	2	2.87879	3.8932	4.90761	0.00999149	0.00386428	0.0879541	0.0542786
chr19	12678570	12678666	7140983	0	-	0.510417	(0.476,0.515]	chr19	720559	8	INTRON	INTRON	ENSG00000285589:DHPS	ENSG00000285589.1:ENSG00000095059.17	ENST00000648033.1:ENST00000210060.12:ENST00000598246.5:ENST00000351660.9:ENST00000600864.5:ENST00000601639.5:ENST00000594424.5:ENST00000601537.5:ENST00000595844.5:ENST00000593400.5:ENST00000596847.5:ENST00000595912.5:ENST00000600451.5:ENST00000597152.5:ENST00000598850.5:ENST00000596162.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	41	2	2.87879	3.8932	4.90761	0.00999149	0.00386428	0.0879541	0.0542786
chr10	21879387	21879486	4577432	0	-	0.525253	(0.515,0.57]	chr10	421906	136	INTRON	INTRON	DNAJC1	ENSG00000136770.11	ENST00000376980.8	protein_coding	protein_coding	protein_coding	protein_coding	2	54	2	2.08547	3.893185	5.7009	0.0289426	2.61423e-5	0.1274	0.00402177
chr16	70524642	70524736	6385141	0	+	0.56383	(0.515,0.57]	chr16	613856	2	UTR5	UTR5:EXON_MRNA:SS3_PROX:INTRON	SF3B3	ENSG00000189091.13	ENST00000566095.6:ENST00000577085.1:ENST00000302516.10:ENST00000567654.1:ENST00000564899.1	protein_coding	protein_coding	protein_coding	protein_coding	4	73	2	2.12882	3.8931	5.65738	0.005888	3.32659e-5	0.0670089	0.00461719
chr11	10495833	10495933	4734357	0	+	0.38	(0.378,0.408]	chr11	438374	1	SS5_PROX	SS5_PROX:INTRON	AMPD3	ENSG00000133805.16	ENST00000444303.6:ENST00000396554.7:ENST00000534047.5:ENST00000396553.7:ENST00000529834.5:ENST00000528723.5:ENST00000529507.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	62	2	2.55607	3.89309	5.23011	0.00704647	5.72873e-4	0.0718189	0.0217398
chr4	139151387	139151487	2247089	0	-	0.43	(0.408,0.44]	chr4	219601	115	INTRON	INTRON	ELF2	ENSG00000109381.21	ENST00000394235.6:ENST00000686138.1:ENST00000511184.5:ENST00000511006.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	69	2	2.70586	3.8928450000000003	5.07983	0.00247652	9.14702e-4	0.0446195	0.027804
chr15	60360237	60360336	6194941	0	-	0.292929	(0.28,0.32]	chr15	590294	19	EXON_MRNA	EXON_MRNA:INTRON	ANXA2	ENSG00000182718.18	ENST00000396024.7:ENST00000559818.6:ENST00000679109.1:ENST00000676687.1:ENST00000558169.6:ENST00000557906.6:ENST00000558558.6:ENST00000559113.6:ENST00000559780.6:ENST00000559956.6:ENST00000560468.6:ENST00000678870.1:ENST00000678061.1:ENST00000678450.1:ENST00000677968.1:ENST00000451270.7:ENST00000558985.6:ENST00000678796.1:ENST00000559647.2:ENST00000332680.8:ENST00000560014.5:ENST00000504475.6:ENST00000421017.6:ENST00000559176.5:ENST00000560466.5:ENST00000558132.5:ENST00000561022.5:ENST00000560367.6:ENST00000558503.6:ENST00000558998.5:ENST00000559559.5:ENST00000560165.5:ENST00000560389.5:ENST00000559725.5:ENST00000559350.5:ENST00000558986.5:ENST00000677258.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	47	2	2.91832	3.8928149999999997	4.86731	0.0116253	0.0102484	0.089002	0.0889104
chr13	95200634	95200734	5638860	0	-	0.54	(0.515,0.57]	chr13	537127	53	INTRON	INTRON	ABCC4	ENSG00000125257.16	ENST00000645237.2:ENST00000643051.1:ENST00000643842.1:ENST00000646439.1:ENST00000643816.1:ENST00000536256.3:ENST00000643556.1:ENST00000629385.1:ENST00000642524.1:ENST00000645532.1:ENST00000644471.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	50	2	2.45585	3.89271	5.32957	0.00797827	4.06834e-4	0.0798772	0.0185763
chrX	123685947	123686047	7878577	0	-	0.42	(0.408,0.44]	chrX	802551	138	INTRON	INTRON	THOC2	ENSG00000125676.20	ENST00000245838.13:ENST00000355725.8:ENST00000491737.5:ENST00000433883.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	100	2	1.43341	3.8926950000000002	6.35198	0.0302713	8.82199e-6	0.143025	0.00228454
chr16	15379263	15379360	6451170	0	-	0.56701	(0.515,0.57]	chr16	621745	11	INTRON	INTRON	NPIPA5	ENSG00000183793.14	ENST00000534094.1	protein_coding	protein_coding	protein_coding	protein_coding	2	51	2	2.87626	3.89269	4.90912	0.0021669	0.00136224	0.0417866	0.0339121
chr14	65076355	65076450	5912062	0	-	0.421053	(0.408,0.44]	chr14	561539	14	UTR3	UTR3:EXON_MRNA:INTRON	MAX	ENSG00000125952.20	ENST00000341653.6:ENST00000651648.1:ENST00000618858.4:ENST00000358402.8:ENST00000394606.6:ENST00000358664.9:ENST00000555932.5:ENST00000284165.10:ENST00000555419.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	41	2	2.96007	3.892685	4.8253	0.00753901	0.0056738	0.0773151	0.0653997
chr8	91106739	91106838	3797222	0	+	0.434343	(0.408,0.44]	chr8	351921	35	INTRON	INTRON	LRRC69	ENSG00000214954.8	ENST00000520099.5:ENST00000343709.7:ENST00000448384.2:ENST00000522144.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	41	2	2.96007	3.892685	4.8253	0.00753901	0.0056738	0.0773151	0.0653997
chr19	21308845	21308945	7158432	0	-	0.31	(0.28,0.32]	chr19	723659	2	SS5_PROX	SS5_PROX:INTRON	ZNF708	ENSG00000182141.10	ENST00000356929.3:ENST00000598046.5:ENST00000601295.1:ENST00000602023.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	47	2	2.73945	3.89262	5.04579	0.017681	0.00714672	0.11319	0.0723634
chr2	84977343	84977443	820325	0	+	0.3	(0.28,0.32]	chr2	91419	47	INTRON	INTRON	KCMF1	ENSG00000176407.18	ENST00000456682.1:ENST00000409785.9:ENST00000428691.5:ENST00000453448.1	protein_coding	protein_coding	protein_coding	protein_coding	1	47	2	2.73945	3.89262	5.04579	0.017681	0.00714672	0.11319	0.0723634
chr5	176242447	176242547	2551093	0	+	0.3	(0.28,0.32]	chr5	243572	30	INTRON	INTRON	SIMC1	ENSG00000170085.18	ENST00000443967.5:ENST00000430704.6:ENST00000341199.10:ENST00000495423.1:ENST00000429602.7:ENST00000508769.1:ENST00000467472.1:ENST00000514128.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	47	2	2.73945	3.89262	5.04579	0.017681	0.00714672	0.11319	0.0723634
chr17	13556442	13556542	6727126	0	-	0.41	(0.408,0.44]	chr17	660143	5	INTRON	INTRON	HS3ST3A1	ENSG00000153976.3	ENST00000284110.2	protein_coding	protein_coding	protein_coding	protein_coding	1	41	2	2.89193	3.8926	4.89327	0.00950364	0.00458906	0.0863579	0.0595107
chr2	84978643	84978743	820338	0	+	0.42	(0.408,0.44]	chr2	91419	60	INTRON	INTRON	KCMF1	ENSG00000176407.18	ENST00000456682.1:ENST00000409785.9:ENST00000428691.5:ENST00000453448.1	protein_coding	protein_coding	protein_coding	protein_coding	1	41	2	2.89193	3.8926	4.89327	0.00950364	0.00458906	0.0863579	0.0595107
chr16	89648178	89648278	6543684	0	-	0.72	(0.57,1]	chr16	634307	6	CDS	CDS:UTR3:EXON_MRNA:INTRON	CHMP1A	ENSG00000131165.16	ENST00000675909.1:ENST00000397901.8:ENST00000676355.1:ENST00000675161.1:ENST00000676402.1:ENST00000675016.1:ENST00000551981.6:ENST00000675309.1:ENST00000675952.1:ENST00000676342.1:ENST00000535997.7:ENST00000674799.1:ENST00000675536.1:ENST00000549328.2:ENST00000675778.1:ENST00000676118.1:ENST00000675076.1:ENST00000549139.5:ENST00000550102.5:ENST00000548650.1:ENST00000547614.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	70	2	1.88953	3.8922649999999996	5.895	0.00287034	6.04397e-7	0.0474836	4.21585e-4
chr1	23317285	23317385	399315	0	-	0.53	(0.515,0.57]	chr1	47847	32	INTRON	INTRON	HNRNPR	ENSG00000125944.21	ENST00000478691.5:ENST00000302271.11:ENST00000374616.7:ENST00000374612.5:ENST00000675048.1:ENST00000606561.5:ENST00000427764.3:ENST00000463552.5:ENST00000470941.5	protein_coding	protein_coding	protein_coding	protein_coding	1	39	2	2.56306	3.892235	5.22141	0.0247751	6.44141e-4	0.131869	0.0231685
chr15	75427299	75427399	6223826	0	-	0.54	(0.515,0.57]	chr15	594504	41	INTRON	INTRON	SIN3A	ENSG00000169375.16	ENST00000394947.8:ENST00000360439.8:ENST00000394949.8:ENST00000564778.5:ENST00000562776.5:ENST00000568431.5:ENST00000567289.5:ENST00000570115.5:ENST00000568309.5:ENST00000568190.1	protein_coding	protein_coding	protein_coding	protein_coding	1	39	2	2.56306	3.892235	5.22141	0.0247751	6.44141e-4	0.131869	0.0231685
chr5	109399138	109399238	2702264	0	-	0.46	(0.44,0.476]	chr5	254366	80	INTRON	INTRON	PJA2	ENSG00000198961.10	ENST00000361189.7:ENST00000511624.1:ENST00000512822.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	41	2	3.02366	3.89217	4.76068	0.00653414	0.00603307	0.0700813	0.0699952
chr6	35351945	35352045	2852072	0	+	0.46	(0.44,0.476]	chr6	269491	44	INTRON	INTRON	PPARD	ENSG00000112033.14	ENST00000418635.6:ENST00000448077.6:ENST00000360694.8:ENST00000311565.4:ENST00000337400.6	protein_coding	protein_coding	protein_coding	protein_coding	1	41	2	3.02366	3.89217	4.76068	0.00653414	0.00603307	0.0700813	0.0699952
chr8	129991760	129991860	4063685	0	-	0.47	(0.44,0.476]	chr8	369844	204	INTRON	INTRON	CYRIB	ENSG00000153310.21	ENST00000694912.1:ENST00000523288.5:ENST00000519110.5:ENST00000401979.6:ENST00000523509.5:ENST00000517654.5:ENST00000518879.5:ENST00000522702.5:ENST00000521223.5:ENST00000518283.5:ENST00000523993.5:ENST00000519020.5:ENST00000518167.5:ENST00000522361.1:ENST00000523514.1:ENST00000518285.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	41	2	3.02366	3.89217	4.76068	0.00653414	0.00603307	0.0700813	0.0699952
chrX	3909324	3909423	7747689	0	-	0.525253	(0.515,0.57]	chrX	793160	27	INTRON	INTRON	ENSG00000285756	ENSG00000285756.2	ENST00000650538.1:ENST00000381106.4	lncRNA	lncRNA	lncRNA	lncRNA	1	44	2	3.49496	3.892085	4.28921	0.00990051	9.61701e-4	0.0877296	0.0282401
chr7	133546405	133546505	3421110	0	+	0.46	(0.44,0.476]	chr7	319376	624	INTRON	INTRON	EXOC4	ENSG00000131558.15	ENST00000486013.5:ENST00000253861.5:ENST00000486409.6:ENST00000479839.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	41	2	2.81896	3.891935	4.96491	0.0120766	0.0034249	0.0962311	0.0517761
chr8	38378617	38378717	3937390	0	-	0.45	(0.44,0.476]	chr8	360833	144	INTRON	INTRON	NSD3	ENSG00000147548.17	ENST00000317025.13:ENST00000433384.6:ENST00000527502.5:ENST00000316985.7:ENST00000529223.1:ENST00000534155.1:ENST00000534539.1	protein_coding	protein_coding	protein_coding	protein_coding	1	41	2	2.81896	3.891935	4.96491	0.0120766	0.0034249	0.0962311	0.0517761
chr19	21766743	21766834	7159298	0	-	0.571429	(0.57,1]	chr19	723743	6	INTRON	INTRON	ZNF100	ENSG00000197020.12	ENST00000358296.11:ENST00000598026.1	protein_coding	protein_coding	protein_coding	protein_coding	3	44	2	2.37366	3.89189	5.41012	0.00373392	1.66635e-5	0.0535844	0.00307972
chr1	193020956	193020996	612473	0	-	0.325	(0.32,0.35]	chr1	72437	1	SS5_PROX	SS5_PROX:INTRON	UCHL5	ENSG00000116750.14	ENST00000367455.8:ENST00000367454.6:ENST00000420791.5:ENST00000449480.5:ENST00000367450.7:ENST00000367451.8:ENST00000367449.5:ENST00000367448.5:ENST00000443327.5:ENST00000416915.1	protein_coding	protein_coding	protein_coding	protein_coding	2	60	2	2.4053	3.8918150000000002	5.37833	0.0108284	0.00174321	0.0920575	0.0375363
chr2	121460718	121460812	1220486	0	-	0.329787	(0.32,0.35]	chr2	129977	2	SS5_PROX	SS5_PROX:INTRON	CLASP1	ENSG00000074054.20	ENST00000263710.8:ENST00000397587.7:ENST00000541377.5:ENST00000409078.8:ENST00000455322.6:ENST00000452274.6:ENST00000430234.5:ENST00000491646.1:ENST00000418989.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	60	2	2.4053	3.8918150000000002	5.37833	0.0108284	0.00174321	0.0920575	0.0375363
chr10	92508282	92508360	4664739	0	-	0.333333	(0.32,0.35]	chr10	429838	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	IDE	ENSG00000119912.18	ENST00000265986.11:ENST00000679312.1:ENST00000650060.1:ENST00000679089.1:ENST00000677569.1:ENST00000677096.1:ENST00000679222.1:ENST00000676540.1:ENST00000678026.1:ENST00000676626.1:ENST00000679069.1:ENST00000678977.1:ENST00000679232.1:ENST00000678844.1:ENST00000679174.1:ENST00000678673.1:ENST00000676816.1:ENST00000678715.1:ENST00000678458.1:ENST00000677193.1:ENST00000679304.1:ENST00000677079.1:ENST00000677434.1:ENST00000678248.1:ENST00000478361.6:ENST00000677978.1:ENST00000677196.1:ENST00000677953.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	62	2	2.82385	3.8917800000000002	4.95971	0.00663522	0.00217392	0.0703181	0.043502
chr3	187013506	187013605	1587012	0	+	0.383838	(0.378,0.408]	chr3	164349	71	INTRON	INTRON	ST6GAL1	ENSG00000073849.16	ENST00000676786.1:ENST00000169298.8:ENST00000457772.6:ENST00000455441.5:ENST00000427315.5:ENST00000677292.1:ENST00000458216.5:ENST00000430309.5:ENST00000417392.5:ENST00000438590.5:ENST00000448408.5:ENST00000676633.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	127	2	3.52243	3.89178	4.26113	1.00701e-4	1.77623e-5	0.00905982	0.00320912
chr1	99706728	99706827	514720	0	-	0.474747	(0.44,0.476]	chr1	60320	29	UTR3	UTR3:EXON_MRNA	FRRS1	ENSG00000156869.14	ENST00000646001.2	protein_coding	protein_coding	protein_coding	protein_coding	4	76	2	2.29258	3.891775	5.49097	0.00279559	4.8612e-4	0.0488779	0.0203841
chr21	33473453	33473553	7440919	0	-	0.33	(0.32,0.35]	chr21	759376	34	INTRON	INTRON	TMEM50B	ENSG00000142188.17	ENST00000420455.5:ENST00000542230.7:ENST00000442441.5:ENST00000432504.1:ENST00000459909.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	49	2	2.4458	3.891625	5.33745	0.0425977	6.1485e-4	0.148082	0.0223951
chr11	67324132	67324232	4814318	0	+	0.59	(0.57,1]	chr11	448377	24	INTRON	INTRON	RAD9A	ENSG00000172613.8	ENST00000622583.4	protein_coding	processed_transcript	protein_coding	processed_transcript	2	37	2	2.73499	3.891545	5.0481	0.00237434	1.32594e-4	0.0438057	0.00992554
chr2	55578049	55578146	1124718	0	-	0.257732	[0,0.28]	chr2	120630	3	SS5_PROX	SS5_PROX:INTRON	PPP4R3B	ENSG00000275052.5	ENST00000616407.2:ENST00000611717.4:ENST00000616288.4	protein_coding	protein_coding	protein_coding	protein_coding	2	69	2	2.52489	3.89152	5.25815	0.0084136	0.0066548	0.082518	0.0703807
chr1	3633011	3633108	363511	0	-	0.628866	(0.57,1]	chr1	42544	8	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	WRAP73	ENSG00000116213.16	ENST00000378322.7:ENST00000270708.12:ENST00000471223.1:ENST00000424367.5:ENST00000497940.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	37	2	2.38391	3.891285	5.39866	0.0104374	2.7267e-5	0.0902296	0.00430583
chr11	65633281	65633380	4806832	0	+	0.575758	(0.57,1]	chr11	446872	23	INTRON	INTRON	PCNX3	ENSG00000197136.5	ENST00000355703.4:ENST00000439247.2:ENST00000531280.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	37	2	2.38391	3.891285	5.39866	0.0104374	2.7267e-5	0.0902296	0.00430583
chr12	70287860	70287958	5166879	0	+	0.438776	(0.408,0.44]	chr12	489387	19	INTRON	INTRON	CNOT2	ENSG00000111596.14	ENST00000547780.5:ENST00000418359.7:ENST00000552319.5:ENST00000550160.5:ENST00000551661.5:ENST00000551132.5:ENST00000553078.5:ENST00000548021.5:ENST00000550641.6:ENST00000229195.8:ENST00000552915.5:ENST00000549443.5:ENST00000548741.5:ENST00000552483.5:ENST00000552422.5:ENST00000547321.5:ENST00000553020.5:ENST00000548159.5:ENST00000549750.5:ENST00000551043.5:ENST00000548599.5:ENST00000550194.5:ENST00000551873.5:ENST00000547867.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	44	2	2.71911	3.8912700000000005	5.06343	0.0189489	0.00101725	0.108861	0.0293497
chr1	120162909	120163009	533698	0	-	0.38	(0.378,0.408]	chr1	62775	3	SS5_PROX	SS5_PROX:INTRON	SEC22B	ENSG00000265808.4	ENST00000578049.4	protein_coding	protein_coding	protein_coding	protein_coding	3	67	2	2.2708	3.8912699999999996	5.51174	0.00646593	5.93655e-4	0.073179	0.0225024
chr9	123167293	123167391	4339456	0	-	0.357143	(0.35,0.378]	chr9	398906	59	INTRON	INTRON	STRBP	ENSG00000165209.19	ENST00000348403.10:ENST00000447404.6:ENST00000360998.3:ENST00000407982.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	43	2	2.99173	3.89126	4.79079	0.00846427	0.00713365	0.0776969	0.0756118
chr1	1688585	1688684	360922	0	-	0.434343	(0.408,0.44]	chr1	42013	114	INTRON	INTRON	SLC35E2B	ENSG00000189339.12	ENST00000614300.4:ENST00000617444.5:ENST00000611123.1:ENST00000481276.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	66	2	2.38928	3.89124	5.3932	0.0039105	7.81492e-4	0.0569957	0.0257168
chr16	16334184	16334284	6310674	0	+	0.41	(0.408,0.44]	chr16	604033	3	SS5_PROX	SS5_PROX:INTRON	ENSG00000183889	ENSG00000183889.12	ENST00000537112.5:ENST00000381497.6:ENST00000538085.5:ENST00000534258.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	66	2	2.38928	3.89124	5.3932	0.0039105	7.81492e-4	0.0569957	0.0257168
chr22	38492813	38492912	7587947	0	-	0.323232	(0.32,0.35]	chr22	776727	3	INTRON	INTRON	DDX17	ENSG00000100201.23	ENST00000403230.3:ENST00000396821.8:ENST00000216019.11:ENST00000475004.6:ENST00000432525.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	66	2	3.08864	3.89122	4.6938	0.0137794	6.64579e-4	0.0949306	0.0233423
chr3	40462728	40462827	1401959	0	+	0.343434	(0.32,0.35]	chr3	147280	6	UTR3	UTR3:EXON_MRNA	RPL14	ENSG00000188846.14	ENST00000338970.10:ENST00000396203.7	protein_coding	protein_coding	protein_coding	protein_coding	2	62	2	2.07985	3.8911249999999997	5.7024	0.0303092	5.25722e-4	0.143025	0.0210958
chr1	54047646	54047738	461538	0	-	0.478261	(0.476,0.515]	chr1	55612	4	UTR5	UTR5:EXON_MRNA:SS3_PROX:INTRON	TMEM59	ENSG00000116209.12	ENST00000234831.10:ENST00000371348.5:ENST00000371341.5:ENST00000440019.5:ENST00000420738.5:ENST00000452421.5:ENST00000371337.3	protein_coding	protein_coding	protein_coding	protein_coding	3	66	2	2.37448	3.891085	5.40769	0.00419067	6.23078e-4	0.0591344	0.0229151
chr1	147285657	147285727	212674	0	+	0.357143	(0.35,0.378]	chr1	23589	2	SS5_PROX	SS5_PROX:INTRON	CHD1L	ENSG00000131778.20	ENST00000652587.1:ENST00000652616.1:ENST00000652494.1:ENST00000651207.1:ENST00000650721.1:ENST00000651226.1:ENST00000652161.1:ENST00000651510.1:ENST00000361293.10:ENST00000652278.1:ENST00000369259.4:ENST00000467213.5:ENST00000369258.8:ENST00000622533.4:ENST00000651410.1:ENST00000652486.1:ENST00000652346.1:ENST00000651407.1:ENST00000650828.1:ENST00000651070.1:ENST00000650714.1:ENST00000651420.1:ENST00000652357.1:ENST00000488864.5:ENST00000652188.1:ENST00000651820.1:ENST00000651231.1:ENST00000651206.1:ENST00000431239.6:ENST00000650813.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	43	2	2.79643	3.89102	4.98561	0.013543	0.00474226	0.101363	0.0600445
chr11	77615612	77615710	4994110	0	-	0.357143	(0.35,0.378]	chr11	471899	12	UTR3	UTR3:EXON_MRNA:INTRON	CLNS1A	ENSG00000074201.9	ENST00000526761.5:ENST00000525428.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	43	2	2.79643	3.89102	4.98561	0.013543	0.00474226	0.101363	0.0600445
chr16	74959592	74959692	6527036	0	-	0.37	(0.35,0.378]	chr16	632147	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	WDR59	ENSG00000103091.15	ENST00000262144.11:ENST00000616369.4:ENST00000536050.5:ENST00000568462.5:ENST00000568323.5:ENST00000563111.2:ENST00000562331.5:ENST00000564859.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	43	2	2.79643	3.89102	4.98561	0.013543	0.00474226	0.101363	0.0600445
chr5	95791354	95791453	2431860	0	+	0.363636	(0.35,0.378]	chr5	233702	21	INTRON	INTRON	RHOBTB3	ENSG00000164292.13	ENST00000379982.8:ENST00000504179.5:ENST00000503737.1:ENST00000513091.1:ENST00000514198.1	protein_coding	protein_coding	protein_coding	protein_coding	1	43	2	2.79643	3.89102	4.98561	0.013543	0.00474226	0.101363	0.0600445
chr1	100422721	100422821	173332	0	+	0.26	[0,0.28]	chr1	18824	315	INTRON	INTRON	CDC14A	ENSG00000079335.20	ENST00000646665.1:ENST00000644844.1:ENST00000635056.2:ENST00000647005.1:ENST00000647203.1:ENST00000644676.1:ENST00000361544.11:ENST00000370124.8:ENST00000336454.5:ENST00000644813.1:ENST00000455467.6:ENST00000646563.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	51	2	2.95729	3.89081	4.82433	0.0200334	0.0101824	0.109608	0.089002
chr9	125293861	125293960	4198577	0	+	0.212121	[0,0.28]	chr9	383154	56	INTRON	INTRON	GAPVD1	ENSG00000165219.23	ENST00000497580.5:ENST00000461379.5:ENST00000297933.11:ENST00000394084.5:ENST00000469528.5:ENST00000470056.5:ENST00000394105.6:ENST00000394083.6:ENST00000495955.5:ENST00000467750.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	51	2	2.95729	3.89081	4.82433	0.0200334	0.0101824	0.109608	0.089002
chr5	95887976	95888075	2681765	0	-	0.373737	(0.35,0.378]	chr5	253497	30	UTR3	UTR3:EXON_MRNA	ELL2	ENSG00000118985.16	ENST00000237853.9	protein_coding	protein_coding	protein_coding	protein_coding	2	58	2	2.67874	3.8905000000000003	5.10226	0.00373022	0.00327038	0.0561984	0.0508595
chr7	133009526	133009626	3645161	0	-	0.38	(0.378,0.408]	chr7	338859	339	INTRON	INTRON	CHCHD3	ENSG00000106554.13	ENST00000262570.10:ENST00000448878.6:ENST00000496427.5:ENST00000423635.5:ENST00000481152.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	45	2	2.66785	3.8905000000000003	5.11315	0.0224639	9.26795e-4	0.11692	0.0278442
chr1	295847	295947	353555	0	-	0.21	[0,0.28]	chr1	40909	61	INTRON	INTRON	ENSG00000228463	ENSG00000228463.10	ENST00000441866.2:ENST00000424587.7	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	1	51	2	2.57033	3.890435	5.21054	0.0305273	0.00758653	0.143385	0.0749063
chr1	226305260	226305359	647819	0	-	0.363636	(0.35,0.378]	chr1	76752	37	INTRON	INTRON	LIN9	ENSG00000183814.16	ENST00000460719.5:ENST00000366808.6:ENST00000328205.9:ENST00000681046.1:ENST00000481685.1:ENST00000359525.2	protein_coding	protein_coding	protein_coding	protein_coding	1	44	2	2.57049	3.8903350000000003	5.21018	0.0262669	0.00228003	0.133676	0.0426265
chrX	73960270	73960368	7682259	0	+	0.357143	(0.35,0.378]	chrX	786628	13	INTRON	INTRON	JPX	ENSG00000225470.8	ENST00000664637.1:ENST00000639185.1:ENST00000655090.1:ENST00000640437.1:ENST00000660546.1:ENST00000667886.1:ENST00000660840.1:ENST00000657179.1:ENST00000670506.1:ENST00000657910.1:ENST00000662120.1:ENST00000671207.1:ENST00000659254.1:ENST00000656624.1:ENST00000667573.1:ENST00000660856.1:ENST00000660836.1:ENST00000668590.1:ENST00000658649.1:ENST00000414209.6:ENST00000654137.1:ENST00000670994.1:ENST00000653479.1:ENST00000602772.5:ENST00000655879.1:ENST00000657372.1:ENST00000657096.1:ENST00000602985.6:ENST00000670685.1:ENST00000670503.1:ENST00000663027.1:ENST00000654995.1:ENST00000602895.6:ENST00000654374.1:ENST00000660087.1:ENST00000665032.1:ENST00000671336.1:ENST00000671476.1:ENST00000667057.1:ENST00000670192.1:ENST00000670464.1:ENST00000665345.1:ENST00000661546.1:ENST00000662543.1:ENST00000602938.6:ENST00000664295.1:ENST00000654005.1:ENST00000669149.1:ENST00000659852.1:ENST00000656509.1:ENST00000602294.6:ENST00000667294.1:ENST00000663470.1:ENST00000602920.6:ENST00000671021.1:ENST00000659849.1:ENST00000667937.1:ENST00000661130.1:ENST00000654196.1:ENST00000655994.1:ENST00000659373.1:ENST00000662239.1:ENST00000670805.1:ENST00000656263.1:ENST00000653069.1:ENST00000657638.1:ENST00000653808.1:ENST00000653929.1:ENST00000653885.1:ENST00000659023.1:ENST00000602546.5:ENST00000659622.1:ENST00000671518.1:ENST00000670408.1	lncRNA	lncRNA	lncRNA	lncRNA	1	44	2	2.57049	3.8903350000000003	5.21018	0.0262669	0.00228003	0.133676	0.0426265
chr16	15974163	15974263	6308004	0	+	0.47	(0.44,0.476]	chr16	603510	240	INTRON	INTRON	ABCC1	ENSG00000103222.20	ENST00000574224.2:ENST00000678422.1:ENST00000677164.1:ENST00000399408.7:ENST00000572882.3:ENST00000399410.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	59	2	2.42996	3.8901399999999997	5.35032	0.0104804	3.02713e-4	0.0855777	0.0155054
chr5	157801471	157801570	2758069	0	-	0.484848	(0.476,0.515]	chr5	260261	55	INTRON	INTRON	CLINT1	ENSG00000113282.14	ENST00000523094.5:ENST00000411809.7:ENST00000530742.5:ENST00000523908.5:ENST00000530302.1:ENST00000521615.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	41	2	3.01197	3.89012	4.76827	0.00633162	0.00600704	0.0722266	0.0674604
chr9	130590183	130590283	4213198	0	+	0.4	(0.378,0.408]	chr9	386268	82	INTRON	INTRON	FUBP3	ENSG00000107164.16	ENST00000319725.10:ENST00000650723.1:ENST00000465949.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	67	2	2.18512	3.88997	5.59482	0.00902136	4.23783e-4	0.0851259	0.0189958
chr10	106955912	106956012	4689188	0	-	0.44	(0.408,0.44]	chr10	432758	1259	INTRON	INTRON	SORCS1	ENSG00000108018.16	ENST00000263054.11:ENST00000612154.4:ENST00000622431.4:ENST00000344440.7	protein_coding	protein_coding	protein_coding	protein_coding	1	44	2	2.6542	3.88994	5.12568	0.0227514	7.90919e-4	0.117618	0.0258324
chr21	29330292	29330391	7392669	0	+	0.414141	(0.408,0.44]	chr21	753205	2	INTRON	INTRON	BACH1	ENSG00000156273.16	ENST00000286800.8:ENST00000399921.5:ENST00000422809.5:ENST00000468059.1	protein_coding	protein_coding	protein_coding	protein_coding	1	44	2	2.6542	3.88994	5.12568	0.0227514	7.90919e-4	0.117618	0.0258324
chr6	119340067	119340167	3205719	0	-	0.38	(0.378,0.408]	chr6	298328	327	INTRON	INTRON	MAN1A1	ENSG00000111885.7	ENST00000368468.4	protein_coding	protein_coding	protein_coding	protein_coding	3	129	2	3.73783	3.8899150000000002	4.042	4.8181e-4	2.12337e-6	0.0203411	9.06701e-4
chr2	65430961	65431061	1144181	0	-	0.71	(0.57,1]	chr2	122242	534	INTRON	INTRON	SPRED2	ENSG00000198369.10	ENST00000356388.9:ENST00000440972.1	protein_coding	protein_coding	protein_coding	protein_coding	3	66	2	3.39829	3.889825	4.38136	6.42666e-5	2.30973e-6	0.00711194	0.00095233100000000005
chr22	19906213	19906313	7555958	0	-	0.44	(0.408,0.44]	chr22	772518	68	INTRON	INTRON	TXNRD2	ENSG00000184470.21	ENST00000400518.5:ENST00000542719.6:ENST00000494454.5:ENST00000474308.5:ENST00000400525.6:ENST00000400521.7:ENST00000400519.6:ENST00000635155.1:ENST00000491939.6:ENST00000334363.14:ENST00000475995.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	44	2	2.78122	3.8897950000000003	4.99837	0.015812	0.00131369	0.101453	0.0333932
chr3	167708687	167708786	1853786	0	-	0.414141	(0.408,0.44]	chr3	186313	34	INTRON	INTRON	PDCD10	ENSG00000114209.15	ENST00000392750.7:ENST00000473645.6:ENST00000497056.6:ENST00000492396.5:ENST00000461494.5:ENST00000470131.5:ENST00000475915.6:ENST00000487947.6:ENST00000471885.5:ENST00000479121.5:ENST00000462725.6:ENST00000492139.5:ENST00000483451.5:ENST00000494502.6:ENST00000464360.5:ENST00000481136.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	44	2	2.78122	3.8897950000000003	4.99837	0.015812	0.00131369	0.101453	0.0333932
chr1	37930894	37930992	426016	0	-	0.520408	(0.515,0.57]	chr1	51621	25	UTR3	UTR3:EXON_MRNA:INTRON	INPP5B	ENSG00000204084.13	ENST00000373023.6:ENST00000373024.8:ENST00000458109.6:ENST00000373027.5:ENST00000373026.5:ENST00000373021.1	protein_coding	protein_coding	protein_coding	protein_coding	4	69	2	1.89462	3.8897649999999997	5.88491	0.0139002	2.75856e-5	0.10247	0.00430942
chr1	1256891	1256991	359016	0	-	0.47	(0.44,0.476]	chr1	41437	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	UBE2J2	ENSG00000160087.21	ENST00000450390.6:ENST00000349431.11:ENST00000347370.6:ENST00000400929.6:ENST00000464036.5:ENST00000360466.6:ENST00000400930.8:ENST00000473215.5:ENST00000435198.5:ENST00000509720.5:ENST00000491779.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	293	2	3.80243	3.889735	3.97704	8.99588e-7	7.57046e-8	5.85469e-4	1.19921e-4
chr16	47475062	47475161	6343439	0	+	0.292929	(0.28,0.32]	chr16	608849	107	INTRON	INTRON	PHKB	ENSG00000102893.17	ENST00000566037.6:ENST00000566044.5:ENST00000299167.12:ENST00000696809.1:ENST00000323584.10:ENST00000565424.2:ENST00000567402.5:ENST00000563376.5:ENST00000564873.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	76	2	2.18212	3.889635	5.59715	0.010265700000000001	0.00123856	0.089002	0.0322669
chr3	177162184	177162283	1872094	0	-	0.30303	(0.28,0.32]	chr3	187428	8	INTRON	INTRON	TBL1XR1	ENSG00000177565.18	ENST00000457928.7:ENST00000430069.5:ENST00000673974.1:ENST00000352800.10:ENST00000422442.6:ENST00000428970.5:ENST00000424913.5:ENST00000437738.5:ENST00000431421.5:ENST00000635794.1:ENST00000630796.2:ENST00000450267.5:ENST00000630833.2:ENST00000431674.5:ENST00000422066.5:ENST00000443315.5:ENST00000627825.2:ENST00000427349.5:ENST00000413084.5:ENST00000637137.1:ENST00000491623.2:ENST00000637544.1:ENST00000636187.1:ENST00000636912.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	76	2	2.18212	3.889635	5.59715	0.010265700000000001	0.00123856	0.089002	0.0322669
chr7	151094536	151094636	3448432	0	+	0.3	(0.28,0.32]	chr7	322165	36	INTRON	INTRON	AGAP3	ENSG00000133612.19	ENST00000490097.5:ENST00000463381.5:ENST00000397238.7:ENST00000622464.4:ENST00000479901.5:ENST00000473312.5:ENST00000469901.5:ENST00000476375.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	76	2	2.1076	3.8895850000000003	5.67157	0.0133585	9.48957e-4	0.100772	0.0281755
chr1	19091436	19091534	385508	0	-	0.346939	(0.32,0.35]	chr1	45644	21	INTRON	INTRON	UBR4	ENSG00000127481.15	ENST00000375254.8:ENST00000375224.1	protein_coding	protein_coding	protein_coding	protein_coding	2	60	2	2.35591	3.88948	5.42305	0.0128129	0.00149027	0.0990564	0.035
chr14	30938618	30938718	5856991	0	-	0.3	(0.28,0.32]	chr14	556481	16	INTRON	INTRON	STRN3	ENSG00000196792.12	ENST00000355683.9:ENST00000357479.10:ENST00000555358.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	67	2	2.91124	3.8892749999999996	4.86731	0.0116253	0.00165124	0.0889104	0.0375241
chr10	101363601	101363701	4509912	0	+	0.5	(0.476,0.515]	chr10	415398	86	INTRON	INTRON	BTRC	ENSG00000166167.18	ENST00000393441.8:ENST00000475200.5:ENST00000408038.6:ENST00000370187.8:ENST00000465182.1:ENST00000370183.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	44	2	2.48527	3.88904	5.29281	0.03496	4.07635e-4	0.13747500000000001	0.0181306
chr15	42953444	42953543	6159117	0	-	0.444444	(0.44,0.476]	chr15	586329	6	INTRON	INTRON	UBR1	ENSG00000159459.12	ENST00000290650.9	protein_coding	protein_coding	protein_coding	protein_coding	1	44	2	2.9195	3.8888350000000003	4.85817	0.0102021	0.00223254	0.0850389	0.0435144
chr22	41679059	41679156	7592030	0	-	0.484536	(0.476,0.515]	chr22	777545	29	INTRON	INTRON	SNU13	ENSG00000100138.15	ENST00000401959.6:ENST00000648674.1:ENST00000215956.10:ENST00000463675.6:ENST00000648350.1:ENST00000649479.1:ENST00000402458.1:ENST00000469028.2:ENST00000649722.1:ENST00000488571.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	44	2	2.99852	3.88854	4.77856	0.0077575	0.00305743	0.0757402	0.0509893
chr2	23768319	23768419	1079335	0	-	0.53	(0.515,0.57]	chr2	115203	23	INTRON	INTRON	ATAD2B	ENSG00000119778.15	ENST00000238789.10:ENST00000381024.4:ENST00000474583.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	40	2	2.52504	3.8884350000000003	5.25183	0.029342	2.6074e-4	0.128055	0.014326
chr5	149539295	149539394	2750960	0	-	0.40404	(0.378,0.408]	chr5	259082	74	INTRON	INTRON	CSNK1A1	ENSG00000113712.19	ENST00000261798.10:ENST00000377843.8:ENST00000657001.1:ENST00000515768.6:ENST00000606719.6:ENST00000657462.1:ENST00000661952.1:ENST00000504676.5:ENST00000515435.5:ENST00000662268.1:ENST00000657706.1:ENST00000670598.1:ENST00000523203.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	46	2	3.00568	3.888365	4.77105	0.00811866	0.00330823	0.0766625	0.0527031
chr3	177032139	177032228	1870755	0	-	0.314607	(0.28,0.32]	chr3	187283	2	SS5_PROX	SS5_PROX:INTRON	TBL1XR1	ENSG00000177565.18	ENST00000636864.1:ENST00000457928.7:ENST00000430069.5:ENST00000637659.1:ENST00000673974.1:ENST00000631253.2:ENST00000352800.10:ENST00000422442.6:ENST00000626758.1:ENST00000636348.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	76	2	2.21798	3.8882149999999998	5.55845	0.00901091	0.00141854	0.0851009	0.0340865
chr17	51187897	51187996	6797127	0	-	0.313131	(0.28,0.32]	chr17	671037	16	INTRON	INTRON	MBTD1	ENSG00000011258.16	ENST00000586178.6:ENST00000415868.5	protein_coding	protein_coding	protein_coding	protein_coding	2	63	2	2.38391	3.8881300000000003	5.39235	0.0122525	0.0024844	0.0969406	0.0446195
chrX	45072139	45072238	7650615	0	+	0.282828	(0.28,0.32]	chrX	782819	19	EXON_MRNA	EXON_MRNA:INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000675440.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000621147.5:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1:ENST00000675525.1:ENST00000414389.5:ENST00000675546.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	63	2	2.38391	3.8881300000000003	5.39235	0.0122525	0.0024844	0.0969406	0.0446195
chr6	35877135	35877235	3088377	0	-	0.41	(0.408,0.44]	chr6	288860	24	INTRON	INTRON	SRPK1	ENSG00000096063.16	ENST00000373825.7:ENST00000423325.6:ENST00000346162.10:ENST00000361690.7:ENST00000510290.5:ENST00000373821.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	47	2	3.2451	3.88799	4.53088	0.00669275	0.00337792	0.0738715	0.0516884
chr1	11089569	11089665	376791	0	-	0.395833	(0.378,0.408]	chr1	44036	10	INTRON	INTRON	EXOSC10	ENSG00000171824.14	ENST00000304457.11:ENST00000376936.9	protein_coding	protein_coding	protein_coding	protein_coding	1	42	2	2.71183	3.887975	5.06412	0.0170789	0.0030522	0.110899	0.0493883
chr15	101283572	101283671	6269915	0	-	0.40404	(0.378,0.408]	chr15	597986	14	INTRON	INTRON	SNRPA1	ENSG00000131876.18	ENST00000254193.11:ENST00000558036.5:ENST00000559309.5:ENST00000560307.5:ENST00000560433.5:ENST00000394082.8:ENST00000540017.6:ENST00000560496.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	42	2	2.71183	3.887975	5.06412	0.0170789	0.0030522	0.110899	0.0493883
chr3	25747513	25747613	1642477	0	-	0.3	(0.28,0.32]	chr3	168658	67	INTRON	INTRON	NGLY1	ENSG00000151092.18	ENST00000280700.10:ENST00000428257.5:ENST00000675217.1:ENST00000676225.1:ENST00000493324.5:ENST00000396649.7:ENST00000675178.1:ENST00000675680.1:ENST00000308710.9:ENST00000280699.13:ENST00000674841.1:ENST00000675234.1:ENST00000463611.2:ENST00000417874.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	47	2	2.97333	3.88794	4.80255	0.0137406	0.00857834	0.0949306	0.083729
chr1	92779480	92779579	508114	0	-	0.393939	(0.378,0.408]	chr1	59892	51	INTRON	INTRON	EVI5	ENSG00000067208.16	ENST00000370331.5:ENST00000540033.2:ENST00000684568.2:ENST00000474806.1:ENST00000466778.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	45	2	2.60296	3.887885	5.17281	0.0267851	7.27294e-4	0.123349	0.0245647
chr17	5463989	5464089	6714754	0	-	0.39	(0.378,0.408]	chr17	658328	3	SS3_PROX	SS3_PROX:INTRON	DHX33	ENSG00000005100.13	ENST00000225296.8:ENST00000433302.7:ENST00000572490.1:ENST00000574023.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	45	2	2.60296	3.887885	5.17281	0.0267851	7.27294e-4	0.123349	0.0245647
chr17	61902775	61902874	6809345	0	-	0.383838	(0.378,0.408]	chr17	672733	47	INTRON	INTRON	INTS2	ENSG00000108506.13	ENST00000251334.7:ENST00000617492.4:ENST00000444766.7:ENST00000646745.1:ENST00000647009.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	45	2	2.60296	3.887885	5.17281	0.0267851	7.27294e-4	0.123349	0.0245647
chr17	82908687	82908786	6695811	0	+	0.555556	(0.515,0.57]	chr17	655016	7	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TBCD	ENSG00000141556.22	ENST00000682479.1:ENST00000682722.1:ENST00000684464.1:ENST00000684544.1:ENST00000681983.1:ENST00000684361.1:ENST00000683184.1:ENST00000683282.1:ENST00000684408.1:ENST00000355528.9:ENST00000683444.1:ENST00000684776.1:ENST00000683041.1:ENST00000684760.1:ENST00000684349.1:ENST00000682213.1:ENST00000539345.6:ENST00000684000.1:ENST00000684188.1:ENST00000684429.1:ENST00000682610.1:ENST00000683821.1:ENST00000682654.1:ENST00000576160.6:ENST00000571712.5:ENST00000576996.5:ENST00000574801.5:ENST00000683584.1:ENST00000682099.1:ENST00000684559.1:ENST00000571316.5:ENST00000576760.5:ENST00000572984.5:ENST00000683839.1:ENST00000574975.5:ENST00000572953.5:ENST00000571796.5:ENST00000682315.1:ENST00000574422.1:ENST00000682225.1:ENST00000576677.6:ENST00000571618.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	40	2	3.09002	3.88785	4.68568	0.00491099	0.00270027	0.0609494	0.0479115
chr7	5408590	5408690	3471931	0	-	0.43	(0.408,0.44]	chr7	324678	13	INTRON	INTRON	TNRC18	ENSG00000182095.15	ENST00000399537.8:ENST00000430969.6:ENST00000399434.2	protein_coding	protein_coding	protein_coding	protein_coding	1	42	2	3.25948	3.88776	4.51604	0.0137419	0.00246454	0.0949306	0.0459102
chr11	46630532	46630600	4784803	0	+	0.382353	(0.378,0.408]	chr11	442592	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ATG13	ENSG00000175224.17	ENST00000580238.5:ENST00000581416.5:ENST00000529655.5:ENST00000533325.5:ENST00000683050.1:ENST00000583249.5:ENST00000581438.5:ENST00000526508.5:ENST00000530500.5:ENST00000577256.5:ENST00000578626.5:ENST00000524625.5:ENST00000534610.5:ENST00000582547.5:ENST00000359513.8:ENST00000528494.5:ENST00000395549.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	45	2	2.78946	3.887665	4.98587	0.0158859	0.00152268	0.101453	0.0360297
chr15	55188805	55188903	6179931	0	-	0.316327	(0.28,0.32]	chr15	589063	21	INTRON	INTRON	RSL24D1	ENSG00000137876.11	ENST00000260443.9:ENST00000569386.2:ENST00000677172.1:ENST00000677147.1:ENST00000562895.2:ENST00000677989.1:ENST00000677730.1:ENST00000677092.1:ENST00000562993.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	49	2	3.26551	3.88766	4.50981	0.0275554	0.0030714	0.123904	0.0509893
chr15	58703250	58703348	6193049	0	-	0.295918	(0.28,0.32]	chr15	589976	45	INTRON	INTRON	ADAM10	ENSG00000137845.15	ENST00000260408.8:ENST00000402627.5:ENST00000561288.1:ENST00000559053.1:ENST00000558733.5:ENST00000439637.5:ENST00000497846.5:ENST00000558004.1:ENST00000560608.5:ENST00000561149.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	49	2	3.26551	3.88766	4.50981	0.0275554	0.0030714	0.123904	0.0509893
chr17	31222280	31222377	6592431	0	+	0.28866000000000003	(0.28,0.32]	chr17	641142	4	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	NF1	ENSG00000196712.20	ENST00000696138.1:ENST00000356175.7:ENST00000691014.1:ENST00000358273.9:ENST00000431387.8:ENST00000579081.5:ENST00000495910.6:ENST00000456735.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	49	2	3.26551	3.88766	4.50981	0.0275554	0.0030714	0.123904	0.0509893
chr20	35716905	35717005	7336291	0	-	0.29	(0.28,0.32]	chr20	747445	1	SS3_PROX	SS3_PROX:INTRON	RBM39	ENSG00000131051.24	ENST00000253363.11:ENST00000639702.1:ENST00000656873.1:ENST00000463004.5:ENST00000361162.10:ENST00000461283.5:ENST00000403542.6:ENST00000338163.10:ENST00000528062.7:ENST00000429968.5:ENST00000444878.5:ENST00000665058.1:ENST00000492779.5:ENST00000448303.5:ENST00000615771.5:ENST00000490484.7:ENST00000494274.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	49	2	3.26551	3.88766	4.50981	0.0275554	0.0030714	0.123904	0.0509893
chr10	22562157	22562256	4578964	0	-	0.30303	(0.28,0.32]	chr10	421979	110	INTRON	INTRON	PIP4K2A	ENSG00000150867.14	ENST00000376573.9:ENST00000323883.11:ENST00000545335.5:ENST00000604912.1	protein_coding	protein_coding	protein_coding	protein_coding	1	47	2	2.67453	3.88761	5.10069	0.021289	0.00610574	0.123318	0.0676501
chr6	26884764	26884858	3071548	0	-	0.297872	(0.28,0.32]	chr6	285532	9	INTRON	INTRON	GUSBP2	ENSG00000241549.8	ENST00000479900.5:ENST00000463434.5:ENST00000492832.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	1	47	2	2.67453	3.88761	5.10069	0.021289	0.00610574	0.123318	0.0676501
chr7	54757294	54757394	3534324	0	-	0.3	(0.28,0.32]	chr7	329621	4	SS5_PROX	SS5_PROX:INTRON	SEC61G	ENSG00000132432.14	ENST00000395535.7:ENST00000415949.5:ENST00000352861.9:ENST00000450622.1:ENST00000460484.5:ENST00000480303.1:ENST00000461536.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	47	2	2.67453	3.88761	5.10069	0.021289	0.00610574	0.123318	0.0676501
chr8	47951121	47951221	3945669	0	-	0.49	(0.476,0.515]	chr8	361951	67	INTRON	INTRON	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7	protein_coding	protein_coding	protein_coding	protein_coding	4	79	2	1.58842	3.8876	6.18678	0.0406588	1.63637e-5	0.161534	0.00324999
chr22	26538637	26538734	7564546	0	-	0.484536	(0.476,0.515]	chr22	774014	18	INTRON	INTRON	TPST2	ENSG00000128294.16	ENST00000338754.9:ENST00000403880.5:ENST00000398110.6:ENST00000445720.1	protein_coding	protein_coding	protein_coding	protein_coding	1	42	2	2.56868	3.8875650000000004	5.20645	0.0256676	0.00136049	0.133676	0.0336321
chr6	151043461	151043561	2999671	0	+	0.48	(0.476,0.515]	chr6	280643	15	INTRON	INTRON	MTHFD1L	ENSG00000120254.16	ENST00000611279.4:ENST00000367321.8:ENST00000618312.4	protein_coding	protein_coding	protein_coding	protein_coding	1	42	2	2.56868	3.8875650000000004	5.20645	0.0256676	0.00136049	0.133676	0.0336321
chr2	26053976	26054076	713298	0	+	0.36	(0.35,0.378]	chr2	82440	113	INTRON	INTRON	RAB10	ENSG00000084733.11	ENST00000264710.5:ENST00000495146.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	63	2	2.09331	3.88748	5.68165	0.0315717	9.36553e-5	0.13151	0.00811835
chr6	36914553	36914623	2855096	0	+	0.528571	(0.515,0.57]	chr6	269893	1	CDS	CDS:EXON_MRNA	C6orf89	ENSG00000198663.17	ENST00000359359.6:ENST00000355190.7:ENST00000373685.1:ENST00000480824.7	protein_coding	protein_coding	protein_coding	protein_coding	2	50	2	2.73258	3.887415	5.04225	0.00260192	0.00131841	0.0470772	0.0331539
chr1	28983831	28983931	59649	0	+	0.59	(0.57,1]	chr1	7621	687	INTRON	INTRON	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000647918.1:ENST00000646800.1:ENST00000644342.1:ENST00000646189.1:ENST00000482464.6:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000646260.1:ENST00000373798.5:ENST00000644600.1:ENST00000649674.1:ENST00000643173.1:ENST00000343067.9:ENST00000644780.1:ENST00000650265.1:ENST00000648181.1:ENST00000643604.1:ENST00000648891.1:ENST00000373797.2:ENST00000349460.9:ENST00000645184.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	28	2	3.40333	3.887345	4.37136	0.00345135	9.20604e-4	0.0517761	0.0278392
chr9	5098709	5098809	4096983	0	+	0.6	(0.57,1]	chr9	373351	74	INTRON	INTRON	JAK2	ENSG00000096968.14	ENST00000381652.4	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	3.40333	3.887345	4.37136	0.00345135	9.20604e-4	0.0517761	0.0278392
chr16	68093500	68093600	6370305	0	+	0.29	(0.28,0.32]	chr16	612188	39	INTRON	INTRON	ENSG00000261864:NFATC3	ENSG00000261864.1:ENSG00000072736.19	ENST00000548144.1:ENST00000563319.5:ENST00000569766.5:ENST00000553077.5:ENST00000566301.5:ENST00000549350.5:ENST00000566893.5:ENST00000575270.5:ENST00000561714.5:ENST00000346183.8:ENST00000568466.6:ENST00000539828.6:ENST00000562171.1:ENST00000349223.9:ENST00000329524.8:ENST00000379165.8:ENST00000562926.5:ENST00000570212.5:ENST00000563796.5:ENST00000567152.5:ENST00000563288.5:ENST00000535127.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA:processed_transcript	1	52	2	2.32871	3.88727	5.44583	0.0581621	5.8721e-4	0.167723	0.0220073
chr1	32124428	32124528	63617	0	+	0.48	(0.476,0.515]	chr1	8071	159	INTRON	INTRON	KPNA6	ENSG00000025800.14	ENST00000373625.8:ENST00000471599.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	55	2	2.32001	3.886955	5.4539	0.0136217	5.16081e-4	0.101682	0.0208667
chr9	128996302	128996398	4208374	0	+	0.510417	(0.476,0.515]	chr9	385393	4	INTRON	INTRON	NUP188	ENSG00000095319.14	ENST00000372577.2:ENST00000477069.5:ENST00000495726.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	55	2	2.32001	3.886955	5.4539	0.0136217	5.16081e-4	0.101682	0.0208667
chr2	55356706	55356802	1123750	0	-	0.427083	(0.408,0.44]	chr2	120530	11	EXON_MRNA	EXON_MRNA:INTRON	CCDC88A	ENSG00000115355.18	ENST00000263630.13:ENST00000436346.7:ENST00000336838.10:ENST00000642200.1:ENST00000413716.7:ENST00000643413.1:ENST00000647401.1:ENST00000643265.1:ENST00000645311.1:ENST00000646796.1:ENST00000645571.1:ENST00000645477.1:ENST00000645072.1:ENST00000644890.1:ENST00000645342.1:ENST00000644630.1:ENST00000647098.1:ENST00000646324.1:ENST00000642890.1:ENST00000647517.1:ENST00000645031.1:ENST00000645484.1:ENST00000645529.1:ENST00000644033.1:ENST00000644193.1:ENST00000647383.1:ENST00000645168.1:ENST00000647341.1:ENST00000644332.1:ENST00000430086.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	42	2	2.58179	3.886905	5.19202	0.024638	0.0016671	0.131869	0.0369207
chr7	92282096	92282195	3353153	0	+	0.414141	(0.408,0.44]	chr7	312479	352	INTRON	INTRON	ANKIB1	ENSG00000001629.10	ENST00000265742.8	protein_coding	protein_coding	protein_coding	protein_coding	1	42	2	2.58179	3.886905	5.19202	0.024638	0.0016671	0.131869	0.0369207
chr10	68522778	68522878	4640237	0	-	0.42	(0.408,0.44]	chr10	426805	47	INTRON	INTRON	SLC25A16	ENSG00000122912.15	ENST00000609923.6:ENST00000493963.5:ENST00000491102.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	55	2	2.33431	3.8868549999999997	5.4394	0.0129219	6.50925e-4	0.0990564	0.0232863
chrX	74232388	74232488	7840995	0	-	0.41	(0.408,0.44]	chrX	799705	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	FTX	ENSG00000230590.12	ENST00000603672.5:ENST00000430772.6:ENST00000602776.6:ENST00000638681.1:ENST00000652319.1:ENST00000661133.1:ENST00000652071.1:ENST00000602812.6:ENST00000651703.1:ENST00000653018.1:ENST00000658448.1:ENST00000662240.1:ENST00000652527.1:ENST00000651451.1:ENST00000657611.1:ENST00000660481.1:ENST00000659574.1:ENST00000661084.1:ENST00000662494.1:ENST00000670936.1:ENST00000602420.6:ENST00000658203.1:ENST00000638985.1:ENST00000691187.1:ENST00000603037.2:ENST00000641360.1:ENST00000687056.1:ENST00000654870.2:ENST00000652540.1:ENST00000652331.2:ENST00000652013.1:ENST00000669263.1:ENST00000657070.1:ENST00000665069.1:ENST00000651936.1:ENST00000652496.1:ENST00000653874.2:ENST00000661335.1:ENST00000664123.1:ENST00000658439.1:ENST00000666535.1:ENST00000652970.1:ENST00000423992.3:ENST00000665313.2:ENST00000651140.1:ENST00000660100.1:ENST00000693483.1	lncRNA	lncRNA	lncRNA	lncRNA	2	55	2	2.33431	3.8868549999999997	5.4394	0.0129219	6.50925e-4	0.0990564	0.0232863
chr7	5389993	5390083	3471741	0	-	0.6	(0.57,1]	chr7	324661	7	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	TNRC18	ENSG00000182095.15	ENST00000399537.8:ENST00000430969.6:ENST00000434361.5:ENST00000399434.2	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	2.79889	3.886735	4.97458	0.0110274	2.67728e-4	0.0927187	0.0149989
chr16	23874412	23874511	6324144	0	+	0.282828	(0.28,0.32]	chr16	605697	52	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000645517.1:ENST00000498739.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	63	2	2.33771	3.886705	5.4357	0.0142701	0.00215368	0.103838	0.0417866
chr10	18522854	18522954	4569412	0	-	0.28	[0,0.28]	chr10	421439	88	INTRON	INTRON	ENSG00000240291	ENSG00000240291.1	ENST00000425669.1	lncRNA	lncRNA	lncRNA	lncRNA	2	76	2	1.98291	3.8864150000000004	5.78992	0.0494143	2.85302e-4	0.156195	0.0150568
chr7	158642535	158642632	3688136	0	-	0.268041	[0,0.28]	chr7	342113	6	INTRON	INTRON	NCAPG2	ENSG00000146918.20	ENST00000356309.8:ENST00000432615.5:ENST00000409423.5:ENST00000441982.5:ENST00000467785.5:ENST00000409339.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	76	2	1.98291	3.8864150000000004	5.78992	0.0494143	2.85302e-4	0.156195	0.0150568
chr1	247209692	247209791	684096	0	-	0.363636	(0.35,0.378]	chr1	80206	3	INTRON	INTRON	ZNF731P	ENSG00000227671.4	ENST00000606173.1:ENST00000606454.1:ENST00000606212.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	4	79	2	1.9392	3.8864099999999997	5.83362	0.0126486	2.04087e-4	0.0982897	0.0129859
chr3	196920631	196920730	1596976	0	+	0.333333	(0.32,0.35]	chr3	165425	62	INTRON	INTRON	SENP5	ENSG00000119231.11	ENST00000445299.6:ENST00000323460.10:ENST00000419026.5	protein_coding	protein_coding	protein_coding	protein_coding	1	45	2	2.64129	3.88626	5.13123	0.0222819	0.00394704	0.124303	0.0548259
chr6	35915366	35915466	3088769	0	-	0.35	(0.32,0.35]	chr6	288898	100	INTRON	INTRON	SRPK1	ENSG00000096063.16	ENST00000373825.7:ENST00000423325.6:ENST00000346162.10:ENST00000361690.7:ENST00000510290.5:ENST00000508473.5:ENST00000512445.5:ENST00000513367.1:ENST00000507909.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	45	2	2.64129	3.88626	5.13123	0.0222819	0.00394704	0.124303	0.0548259
chr3	52484107	52484203	1428561	0	+	0.291667	(0.28,0.32]	chr3	150892	2	SS3_PROX	SS3_PROX:INTRON	NISCH	ENSG00000010322.16	ENST00000479054.5:ENST00000345716.9:ENST00000489895.5:ENST00000485765.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	64	2	2.67153	3.8861100000000004	5.10069	0.00610574	0.00436402	0.0676501	0.060356
chr4	153592174	153592274	2068529	0	+	0.38	(0.378,0.408]	chr4	204651	3	SS3_PROX	SS3_PROX:INTRON	TMEM131L	ENSG00000121210.16	ENST00000409663.7:ENST00000409959.8:ENST00000240487.5	protein_coding	protein_coding	protein_coding	protein_coding	2	57	2	2.82967	3.886085	4.9425	0.00452675	0.00189968	0.0595107	0.0402736
chr19	24065100	24065169	7044183	0	+	0.478261	(0.476,0.515]	chr19	702377	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ENSG00000268362:ZNF254	ENSG00000268362.6:ENSG00000213096.11	ENST00000664647.1:ENST00000613065.4:ENST00000666101.1:ENST00000653003.1:ENST00000666488.1:ENST00000594934.6:ENST00000654353.1:ENST00000662140.1:ENST00000668060.1:ENST00000660137.1:ENST00000652968.1:ENST00000670905.1:ENST00000658858.1:ENST00000654594.1:ENST00000654372.1:ENST00000652837.1:ENST00000654611.1:ENST00000597683.1:ENST00000671141.1:ENST00000653308.1:ENST00000661386.1:ENST00000668656.1:ENST00000663903.1:ENST00000668169.1:ENST00000663458.1:ENST00000662903.1:ENST00000665638.1:ENST00000668701.1:ENST00000655664.1:ENST00000666861.1:ENST00000664627.1:ENST00000661650.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	1	46	2	3.24596	3.88598	4.526	0.00699701	0.00322919	0.0754576	0.0507087
chr12	45961212	45961307	5315324	0	-	0.347368	(0.32,0.35]	chr12	505619	9	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	SCAF11	ENSG00000139218.18	ENST00000369367.8:ENST00000547018.5:ENST00000266589.10:ENST00000395454.6:ENST00000395453.2	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay	2	60	2	2.58753	3.88584	5.18415	0.00560122	0.00333629	0.0678837	0.0512081
chr1	51523782	51523882	98607	0	+	0.37	(0.35,0.378]	chr1	13212	49	INTRON	INTRON	EPS15-AS1	ENSG00000227070.1	ENST00000415031.1:ENST00000426017.1	lncRNA	lncRNA	lncRNA	lncRNA	0	20	2	3.80129	3.885805	3.97032	0.0578667	0.0504034	0.17488	0.167723
chr1	93233486	93233584	163723	0	+	0.377551	(0.35,0.378]	chr1	17764	5	INTRON	INTRON	CCDC18	ENSG00000122483.18	ENST00000343253.11:ENST00000401026.7:ENST00000690592.1:ENST00000370276.6:ENST00000690025.1:ENST00000692873.1:ENST00000455267.1:ENST00000421014.2:ENST00000688770.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	20	2	3.80129	3.885805	3.97032	0.0578667	0.0504034	0.17488	0.167723
chr1	150385812	150385912	221913	0	+	0.37	(0.35,0.378]	chr1	25051	205	INTRON	INTRON	RPRD2	ENSG00000163125.16	ENST00000492220.1:ENST00000369068.5:ENST00000401000.8:ENST00000369067.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	20	2	3.80129	3.885805	3.97032	0.0578667	0.0504034	0.17488	0.167723
chr1	150633644	150633742	223327	0	+	0.377551	(0.35,0.378]	chr1	25337	28	INTRON	INTRON	ENSG00000288880	ENSG00000288880.1	ENST00000690011.1	lncRNA	lncRNA	lncRNA	lncRNA	0	20	2	3.80129	3.885805	3.97032	0.0578667	0.0504034	0.17488	0.167723
chr1	175003626	175003724	265575	0	+	0.357143	(0.35,0.378]	chr1	30984	27	INTRON	INTRON	CACYBP	ENSG00000116161.18	ENST00000613570.4:ENST00000426793.1:ENST00000461977.1:ENST00000483307.1:ENST00000367679.7:ENST00000473925.1:ENST00000406752.1:ENST00000405362.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	20	2	3.80129	3.885805	3.97032	0.0578667	0.0504034	0.17488	0.167723
chr1	183535295	183535391	274157	0	+	0.375	(0.35,0.378]	chr1	32096	11	INTRON	INTRON	SMG7	ENSG00000116698.22	ENST00000367537.7:ENST00000688051.1:ENST00000685780.1:ENST00000508461.5:ENST00000347615.6:ENST00000419169.5:ENST00000507469.5:ENST00000515829.6	protein_coding	protein_coding	protein_coding	protein_coding	0	20	2	3.80129	3.885805	3.97032	0.0578667	0.0504034	0.17488	0.167723
chr1	212309587	212309686	308318	0	+	0.363636	(0.35,0.378]	chr1	35566	23	INTRON	INTRON	PPP2R5A	ENSG00000066027.12	ENST00000261461.7:ENST00000537030.3:ENST00000498129.6:ENST00000479259.1:ENST00000498123.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	20	2	3.80129	3.885805	3.97032	0.0578667	0.0504034	0.17488	0.167723
chr10	73485012	73485112	4650045	0	-	0.36	(0.35,0.378]	chr10	427923	51	INTRON	INTRON	PPP3CB	ENSG00000107758.16	ENST00000360663.10:ENST00000394828.6:ENST00000394829.6:ENST00000342558.3	protein_coding	protein_coding	protein_coding	protein_coding	0	20	2	3.80129	3.885805	3.97032	0.0578667	0.0504034	0.17488	0.167723
chr10	110077711	110077804	4519092	0	+	0.376344	(0.35,0.378]	chr10	416775	2	INTRON	INTRON	ADD3	ENSG00000148700.15	ENST00000468251.5:ENST00000360162.7:ENST00000277900.12:ENST00000356080.9:ENST00000484622.5:ENST00000487085.5:ENST00000459738.5:ENST00000497125.5:ENST00000495661.5:ENST00000475954.5:ENST00000496517.5:ENST00000468345.1:ENST00000473669.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	20	2	3.80129	3.885805	3.97032	0.0578667	0.0504034	0.17488	0.167723
chr11	11848519	11848619	4735620	0	+	0.37	(0.35,0.378]	chr11	438597	59	INTRON	INTRON	USP47	ENSG00000170242.19	ENST00000339865.9:ENST00000525257.1:ENST00000527733.7:ENST00000399455.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	20	2	3.80129	3.885805	3.97032	0.0578667	0.0504034	0.17488	0.167723
chr12	93429376	93429476	5388113	0	-	0.37	(0.35,0.378]	chr12	513727	46	INTRON	INTRON	UBE2N	ENSG00000177889.10	ENST00000318066.7:ENST00000550657.1:ENST00000549833.1:ENST00000549490.1:ENST00000552442.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	20	2	3.80129	3.885805	3.97032	0.0578667	0.0504034	0.17488	0.167723
chr12	104541378	104541478	5211528	0	+	0.36	(0.35,0.378]	chr12	493315	835	INTRON	INTRON	CHST11	ENSG00000171310.11	ENST00000303694.6:ENST00000547956.1:ENST00000549260.5:ENST00000546689.1	protein_coding	protein_coding	protein_coding	protein_coding	0	20	2	3.80129	3.885805	3.97032	0.0578667	0.0504034	0.17488	0.167723
chr13	51964273	51964371	5596433	0	-	0.367347	(0.35,0.378]	chr13	534946	20	INTRON	INTRON	ATP7B	ENSG00000123191.16	ENST00000242839.10:ENST00000344297.9:ENST00000674147.1:ENST00000448424.7:ENST00000634620.1:ENST00000634296.1:ENST00000400370.8:ENST00000634844.1:ENST00000673772.1:ENST00000634308.1:ENST00000418097.7:ENST00000400366.6:ENST00000635406.1:ENST00000482841.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	20	2	3.80129	3.885805	3.97032	0.0578667	0.0504034	0.17488	0.167723
chr13	112559144	112559221	5651428	0	-	0.350649	(0.35,0.378]	chr13	538519	4	SS5_PROX	SS5_PROX:INTRON	TUBGCP3	ENSG00000126216.15	ENST00000261965.8:ENST00000649778.1:ENST00000375669.7:ENST00000464139.5:ENST00000483532.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	20	2	3.80129	3.885805	3.97032	0.0578667	0.0504034	0.17488	0.167723
chr16	18525151	18525250	6456189	0	-	0.363636	(0.35,0.378]	chr16	622403	2	INTRON	INTRON	NOMO2	ENSG00000185164.15	ENST00000330537.10:ENST00000381474.7:ENST00000564991.5:ENST00000621364.4:ENST00000622306.5:ENST00000543392.5:ENST00000567831.5:ENST00000569051.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	20	2	3.80129	3.885805	3.97032	0.0578667	0.0504034	0.17488	0.167723
chr16	78847437	78847537	6400151	0	+	0.36	(0.35,0.378]	chr16	614837	671	INTRON	INTRON	WWOX	ENSG00000186153.18	ENST00000683929.1:ENST00000569332.5:ENST00000402655.6:ENST00000406884.6:ENST00000539474.6:ENST00000566780.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	20	2	3.80129	3.885805	3.97032	0.0578667	0.0504034	0.17488	0.167723
chr17	46030012	46030110	6783213	0	-	0.377551	(0.35,0.378]	chr17	669144	2	UTR3	UTR3:EXON_MRNA	KANSL1	ENSG00000120071.15	ENST00000574590.6:ENST00000572904.6:ENST00000432791.7:ENST00000572218.5:ENST00000575318.6:ENST00000638275.1:ENST00000576870.5:ENST00000262419.10:ENST00000648792.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	20	2	3.80129	3.885805	3.97032	0.0578667	0.0504034	0.17488	0.167723
chr18	9750980	9751080	6872204	0	+	0.37	(0.35,0.378]	chr18	680793	245	INTRON	INTRON	RAB31	ENSG00000168461.13	ENST00000578734.5:ENST00000578921.6:ENST00000581109.1:ENST00000583137.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	20	2	3.80129	3.885805	3.97032	0.0578667	0.0504034	0.17488	0.167723
chr18	49222513	49222613	6970600	0	-	0.37	(0.35,0.378]	chr18	689779	124	INTRON	INTRON	DYM	ENSG00000141627.14	ENST00000675505.1:ENST00000269445.10:ENST00000442713.6	protein_coding	protein_coding	protein_coding	protein_coding	0	20	2	3.80129	3.885805	3.97032	0.0578667	0.0504034	0.17488	0.167723
chr2	127851185	127851280	1225965	0	-	0.368421	(0.35,0.378]	chr2	130535	1	INTRON	INTRON	POLR2D	ENSG00000144231.11	ENST00000272645.9:ENST00000409955.1:ENST00000487079.1:ENST00000409698.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	20	2	3.80129	3.885805	3.97032	0.0578667	0.0504034	0.17488	0.167723
chr22	50426300	50426399	7545031	0	+	0.363636	(0.35,0.378]	chr22	771081	23	INTRON	INTRON	PPP6R2	ENSG00000100239.16	ENST00000359139.7:ENST00000395741.7:ENST00000612753.5:ENST00000395744.7:ENST00000216061.9:ENST00000401672.7:ENST00000427222.2	protein_coding	protein_coding	protein_coding	protein_coding	0	20	2	3.80129	3.885805	3.97032	0.0578667	0.0504034	0.17488	0.167723
chr3	6683920	6684020	1358083	0	+	0.37	(0.35,0.378]	chr3	142522	995	INTRON	INTRON	ENSG00000189229	ENSG00000189229.12	ENST00000433639.1:ENST00000655754.1:ENST00000658468.1:ENST00000669512.1:ENST00000667028.1:ENST00000655541.1:ENST00000668643.1:ENST00000671568.1:ENST00000671036.1:ENST00000669798.1:ENST00000655753.1:ENST00000655856.1:ENST00000658398.1:ENST00000661518.1:ENST00000661279.1:ENST00000655495.1:ENST00000663041.1:ENST00000659827.1:ENST00000667716.1:ENST00000668416.1:ENST00000658133.1:ENST00000342990.4:ENST00000660054.1:ENST00000671370.1	lncRNA	lncRNA	lncRNA	lncRNA	0	20	2	3.80129	3.885805	3.97032	0.0578667	0.0504034	0.17488	0.167723
chr4	8439349	8439449	2103481	0	-	0.37	(0.35,0.378]	chr4	208332	110	INTRON	INTRON	ACOX3	ENSG00000087008.16	ENST00000356406.10:ENST00000413009.6	protein_coding	protein_coding	protein_coding	protein_coding	0	20	2	3.80129	3.885805	3.97032	0.0578667	0.0504034	0.17488	0.167723
chr4	26894606	26894706	1940051	0	+	0.36	(0.35,0.378]	chr4	194632	126	INTRON	INTRON	STIM2	ENSG00000109689.19	ENST00000477474.3:ENST00000494628.6:ENST00000463501.5:ENST00000467011.6:ENST00000467087.7:ENST00000465503.6:ENST00000478049.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	20	2	3.80129	3.885805	3.97032	0.0578667	0.0504034	0.17488	0.167723
chr4	32103154	32103254	1942480	0	+	0.37	(0.35,0.378]	chr4	194727	1050	INTRON	INTRON	LINC02506	ENSG00000251129.3	ENST00000662669.1:ENST00000665582.2:ENST00000667252.2:ENST00000660373.2:ENST00000684849.1:ENST00000513211.2:ENST00000659613.1:ENST00000657576.1:ENST00000686730.1:ENST00000685407.1:ENST00000685455.1:ENST00000655951.1	lncRNA	lncRNA	lncRNA	lncRNA	0	20	2	3.80129	3.885805	3.97032	0.0578667	0.0504034	0.17488	0.167723
chr4	89051739	89051839	2202914	0	-	0.36	(0.35,0.378]	chr4	216016	217	INTRON	INTRON	FAM13A	ENSG00000138640.15	ENST00000264344.10:ENST00000511976.5:ENST00000502459.5:ENST00000512339.5:ENST00000509094.5:ENST00000515600.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	20	2	3.80129	3.885805	3.97032	0.0578667	0.0504034	0.17488	0.167723
chr5	62625955	62626055	2365182	0	+	0.36	(0.35,0.378]	chr5	228042	238	INTRON	INTRON	IPO11	ENSG00000086200.17	ENST00000325324.11:ENST00000409296.7:ENST00000511713.5:ENST00000409534.1:ENST00000512177.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	20	2	3.80129	3.885805	3.97032	0.0578667	0.0504034	0.17488	0.167723
chr5	75591914	75592012	2391955	0	+	0.367347	(0.35,0.378]	chr5	231075	11	INTRON	INTRON	POLK	ENSG00000122008.15	ENST00000241436.8:ENST00000503479.6:ENST00000506928.5:ENST00000510815.6:ENST00000514141.5:ENST00000504026.5:ENST00000505975.5:ENST00000508526.5:ENST00000509126.2:ENST00000511527.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	20	2	3.80129	3.885805	3.97032	0.0578667	0.0504034	0.17488	0.167723
chr5	154951833	154951932	2527981	0	+	0.373737	(0.35,0.378]	chr5	241792	5	INTRON	INTRON	MRPL22	ENSG00000082515.18	ENST00000523037.6:ENST00000265229.12:ENST00000439747.7:ENST00000522038.5:ENST00000519059.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	20	2	3.80129	3.885805	3.97032	0.0578667	0.0504034	0.17488	0.167723
chr6	122565965	122566065	2948611	0	+	0.36	(0.35,0.378]	chr6	277524	726	INTRON	INTRON	PKIB	ENSG00000135549.16	ENST00000615438.4:ENST00000392491.6:ENST00000608895.5:ENST00000618977.4:ENST00000583007.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	20	2	3.80129	3.885805	3.97032	0.0578667	0.0504034	0.17488	0.167723
chr7	65753838	65753932	3322760	0	+	0.37234	(0.35,0.378]	chr7	308952	12	INTRON	INTRON	CCT6P1	ENSG00000228409.7	ENST00000686363.1:ENST00000688735.1:ENST00000689814.1:ENST00000690196.1:ENST00000690636.1:ENST00000687809.1:ENST00000688944.1:ENST00000691983.1:ENST00000688184.1:ENST00000688478.1:ENST00000443108.7:ENST00000686689.1:ENST00000689785.1:ENST00000685316.1:ENST00000442266.3:ENST00000685398.1:ENST00000434500.6	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	20	2	3.80129	3.885805	3.97032	0.0578667	0.0504034	0.17488	0.167723
chr7	66935459	66935559	3326376	0	+	0.37	(0.35,0.378]	chr7	309339	42	INTRON	INTRON	TMEM248	ENSG00000106609.16	ENST00000341567.8:ENST00000607045.5:ENST00000433271.6:ENST00000413593.5:ENST00000424964.6:ENST00000418375.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	20	2	3.80129	3.885805	3.97032	0.0578667	0.0504034	0.17488	0.167723
chr7	127845323	127845423	3404345	0	+	0.37	(0.35,0.378]	chr7	318146	5	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000468166.5:ENST00000465900.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	20	2	3.80129	3.885805	3.97032	0.0578667	0.0504034	0.17488	0.167723
chr7	149479649	149479749	3671652	0	-	0.37	(0.35,0.378]	chr7	340777	15	INTRON	INTRON	ZNF746	ENSG00000181220.18	ENST00000644635.1:ENST00000340622.8:ENST00000458143.7:ENST00000685153.1	protein_coding	protein_coding	protein_coding	protein_coding	0	20	2	3.80129	3.885805	3.97032	0.0578667	0.0504034	0.17488	0.167723
chr7	152812010	152812107	3451046	0	+	0.371134	(0.35,0.378]	chr7	322539	14	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	ACTR3B	ENSG00000133627.18	ENST00000377776.7:ENST00000256001.13:ENST00000397282.2:ENST00000488782.1:ENST00000479402.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	20	2	3.80129	3.885805	3.97032	0.0578667	0.0504034	0.17488	0.167723
chr8	26361551	26361651	3716811	0	+	0.37	(0.35,0.378]	chr8	345428	4	SS5_PROX	SS5_PROX:INTRON	PPP2R2A	ENSG00000221914.11	ENST00000380737.8:ENST00000524169.5:ENST00000665949.1:ENST00000660435.1:ENST00000315985.7:ENST00000667651.1:ENST00000657943.1:ENST00000666129.1:ENST00000518215.5:ENST00000665751.1:ENST00000518890.5:ENST00000517754.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	20	2	3.80129	3.885805	3.97032	0.0578667	0.0504034	0.17488	0.167723
chr21	36395050	36395150	7404479	0	+	0.42	(0.408,0.44]	chr21	754442	4	SS5_PROX	SS5_PROX:INTRON	CHAF1B	ENSG00000159259.8	ENST00000314103.6:ENST00000480486.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	44	2	2.58624	3.8858	5.18536	0.0273686	6.17381e-4	0.123904	0.0223951
chr1	1815057	1815156	362070	0	-	0.444444	(0.44,0.476]	chr1	42277	82	INTRON	INTRON	GNB1	ENSG00000078369.18	ENST00000610897.4:ENST00000615252.4:ENST00000378609.9:ENST00000471354.1:ENST00000439272.6:ENST00000434686.6:ENST00000437146.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	41	2	3.08591	3.885775	4.68564	0.00816201	0.00481262	0.0766625	0.0638089
chr3	47821210	47821306	1420149	0	+	0.447917	(0.44,0.476]	chr3	149199	16	INTRON	INTRON	DHX30	ENSG00000132153.15	ENST00000476446.5:ENST00000415400.5:ENST00000492893.5:ENST00000395745.6:ENST00000445061.6:ENST00000441384.5:ENST00000348968.8:ENST00000446256.6:ENST00000619982.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	41	2	3.08591	3.885775	4.68564	0.00816201	0.00481262	0.0766625	0.0638089
chr7	107387138	107387238	3611255	0	-	0.47	(0.44,0.476]	chr7	336688	140	INTRON	INTRON	COG5	ENSG00000164597.15	ENST00000297135.9:ENST00000347053.8:ENST00000393603.7:ENST00000484237.5:ENST00000475638.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	41	2	3.08591	3.885775	4.68564	0.00816201	0.00481262	0.0766625	0.0638089
chr1	21722830	21722924	396245	0	-	0.340426	(0.32,0.35]	chr1	47269	7	INTRON	INTRON	USP48	ENSG00000090686.16	ENST00000400301.5:ENST00000308271.14:ENST00000374732.7:ENST00000529637.5:ENST00000487880.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	140	2	3.37116	3.8857150000000003	4.40027	2.88118e-4	1.10364e-5	0.015631	0.00244565
chr2	202267476	202267576	984927	0	+	0.34	(0.32,0.35]	chr2	105703	11	INTRON	INTRON	NOP58	ENSG00000055044.11	ENST00000488403.5:ENST00000426814.5:ENST00000264279.10:ENST00000472050.5:ENST00000492740.5:ENST00000467734.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	46	2	2.48693	3.8857150000000003	5.2845	0.0338094	0.00240071	0.146709	0.0440612
chr3	143029342	143029440	1529375	0	+	0.295918	(0.28,0.32]	chr3	159412	3	INTRON	INTRON	U2SURP	ENSG00000163714.18	ENST00000488497.7:ENST00000473835.7:ENST00000493598.6:ENST00000463563.6:ENST00000480029.5:ENST00000472373.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	64	2	2.13651	3.885675	5.63484	0.0265696	0.00108324	0.134088	0.0303015
chr12	66158579	66158678	5352754	0	-	0.434343	(0.408,0.44]	chr12	511469	48	INTRON	INTRON	TMBIM4	ENSG00000155957.19	ENST00000358230.8:ENST00000544599.5:ENST00000398033.8:ENST00000633367.1:ENST00000286424.12:ENST00000545407.5:ENST00000542724.5:ENST00000545504.1:ENST00000534930.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	44	2	2.84077	3.885505	4.93024	0.0132196	0.00170369	0.0940535	0.0381936
chr7	73506635	73506735	3554942	0	-	0.52	(0.515,0.57]	chr7	330801	76	INTRON	INTRON	BAZ1B	ENSG00000009954.11	ENST00000339594.9:ENST00000404251.1	protein_coding	protein_coding	protein_coding	protein_coding	3	64	2	2.86184	3.88548	4.90912	0.0021669	3.55958e-4	0.0417866	0.0168968
chr22	40196133	40196233	7518366	0	+	0.36	(0.35,0.378]	chr22	768108	176	INTRON	INTRON	TNRC6B	ENSG00000100354.21	ENST00000301923.13:ENST00000402203.5:ENST00000454349.7:ENST00000489500.1:ENST00000335727.13	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	43	2	3.05136	3.885445	4.71953	0.0103314	0.00578894	0.0850389	0.0684334
chr7	5054422	5054520	3271803	0	+	0.357143	(0.35,0.378]	chr7	304061	60	INTRON	INTRON	RBAK	ENSG00000146587.18	ENST00000353796.7:ENST00000396912.2	protein_coding	protein_coding	protein_coding	protein_coding	1	43	2	3.05136	3.885445	4.71953	0.0103314	0.00578894	0.0850389	0.0684334
chr1	246918477	246918577	681828	0	-	0.47	(0.44,0.476]	chr1	80042	1	SS3_PROX	SS3_PROX:INTRON	AHCTF1	ENSG00000153207.16	ENST00000648844.2:ENST00000326225.3:ENST00000366508.5	protein_coding	protein_coding	protein_coding	protein_coding	3	67	2	2.572	3.8854	5.1988	0.00173736	0.00151532	0.03851	0.0352794
chr12	122594982	122595080	5241313	0	+	0.44898	(0.44,0.476]	chr12	497808	2	INTRON	INTRON	KNTC1	ENSG00000184445.12	ENST00000450485.6:ENST00000333479.12:ENST00000535186.1:ENST00000423927.2:ENST00000545065.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	41	2	2.74372	3.885375	5.02703	0.0153007	0.00278015	0.108569	0.0469265
chr9	100089404	100089503	4308552	0	-	0.464646	(0.44,0.476]	chr9	395811	289	INTRON	INTRON	ERP44	ENSG00000023318.9	ENST00000262455.7:ENST00000685319.1:ENST00000691188.1:ENST00000687025.1:ENST00000687093.1:ENST00000690739.1:ENST00000687017.1:ENST00000690317.1:ENST00000691823.1:ENST00000686275.1:ENST00000689406.1:ENST00000684842.1:ENST00000688230.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	41	2	2.74372	3.885375	5.02703	0.0153007	0.00278015	0.108569	0.0469265
chrX	18351091	18351191	7771023	0	-	0.46	(0.44,0.476]	chrX	794213	166	INTRON	INTRON	SCML2	ENSG00000102098.19	ENST00000251900.9	protein_coding	protein_coding	protein_coding	protein_coding	1	41	2	2.74372	3.885375	5.02703	0.0153007	0.00278015	0.108569	0.0469265
chr14	105226948	105227043	5973604	0	-	0.463158	(0.44,0.476]	chr14	568006	3	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	BRF1	ENSG00000185024.18	ENST00000547530.7:ENST00000379937.6:ENST00000392557.8:ENST00000446501.6:ENST00000551787.5:ENST00000619151.4:ENST00000327359.7:ENST00000440513.7:ENST00000547562.5:ENST00000549655.5:ENST00000552127.5:ENST00000546417.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	59	2	2.47339	3.88531	5.29723	0.0090196	3.83422e-4	0.080367	0.017699199999999998
chr3	128621473	128621568	1813704	0	-	0.442105	(0.44,0.476]	chr3	182272	5	INTRON	INTRON	RPN1	ENSG00000163902.12	ENST00000296255.8:ENST00000497289.5	protein_coding	protein_coding	protein_coding	protein_coding	2	59	2	2.47339	3.88531	5.29723	0.0090196	3.83422e-4	0.080367	0.017699199999999998
chr7	157250471	157250570	3455081	0	+	0.474747	(0.44,0.476]	chr7	323009	15	INTRON	INTRON	UBE3C	ENSG00000009335.18	ENST00000348165.10:ENST00000470408.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	59	2	2.47339	3.88531	5.29723	0.0090196	3.83422e-4	0.080367	0.017699199999999998
chr8	97648184	97648283	3809099	0	+	0.444444	(0.44,0.476]	chr8	352836	29	INTRON	INTRON	MTDH	ENSG00000147649.10	ENST00000336273.8:ENST00000519934.5:ENST00000522313.1	protein_coding	protein_coding	protein_coding	protein_coding	2	59	2	2.47339	3.88531	5.29723	0.0090196	3.83422e-4	0.080367	0.017699199999999998
chr1	179191861	179191961	592701	0	-	0.29	(0.28,0.32]	chr1	71074	489	INTRON	INTRON	ABL2	ENSG00000143322.21	ENST00000502732.6:ENST00000367623.8:ENST00000507173.5:ENST00000511413.5:ENST00000668691.1:ENST00000392043.4:ENST00000660584.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	51	2	2.62686	3.885135	5.14341	0.0289217	0.00185891	0.1274	0.039946
chr5	131282533	131282633	2484821	0	+	0.32	(0.28,0.32]	chr5	237114	180	INTRON	INTRON	CDC42SE2	ENSG00000158985.14	ENST00000502840.5:ENST00000511432.5:ENST00000506419.5:ENST00000395246.5:ENST00000505065.2:ENST00000504701.5:ENST00000503291.5:ENST00000360515.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	51	2	2.62686	3.885135	5.14341	0.0289217	0.00185891	0.1274	0.039946
chr1	229335322	229335421	652537	0	-	0.393939	(0.378,0.408]	chr1	77248	74	INTRON	INTRON	CCSAP	ENSG00000154429.11	ENST00000366687.5:ENST00000284617.7:ENST00000366686.1:ENST00000483092.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	94	2	3.50907	3.8850999999999996	4.26113	0.00127828	1.77623e-5	0.0326395	0.00320912
chr18	12878807	12878906	6950692	0	-	0.373737	(0.35,0.378]	chr18	687627	62	INTRON	INTRON	PTPN2	ENSG00000175354.20	ENST00000327283.7:ENST00000591115.5:ENST00000353319.8:ENST00000309660.10:ENST00000646492.1:ENST00000645191.1:ENST00000645816.1:ENST00000591305.5:ENST00000592776.1:ENST00000589216.1:ENST00000592059.5:ENST00000643397.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	43	2	2.72498	3.8850499999999997	5.04512	0.0168499	0.00393262	0.11068	0.0548259
chr18	26027616	26027716	6959082	0	-	0.37	(0.35,0.378]	chr18	688408	36	INTRON	INTRON	SS18	ENSG00000141380.14	ENST00000415083.7:ENST00000542420.6:ENST00000579640.5:ENST00000269138.9:ENST00000269137.11:ENST00000585121.5:ENST00000580958.5:ENST00000582092.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	43	2	2.72498	3.8850499999999997	5.04512	0.0168499	0.00393262	0.11068	0.0548259
chr4	109503633	109503732	2019274	0	+	0.363636	(0.35,0.378]	chr4	200784	84	INTRON	INTRON	SEC24B	ENSG00000138802.11	ENST00000504968.6:ENST00000399100.6:ENST00000265175.5	protein_coding	protein_coding	protein_coding	protein_coding	1	43	2	2.72498	3.8850499999999997	5.04512	0.0168499	0.00393262	0.11068	0.0548259
chr17	38849735	38849834	6765095	0	-	0.343434	(0.32,0.35]	chr17	665390	18	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	RPL23	ENSG00000125691.14	ENST00000479035.7:ENST00000394333.5:ENST00000394332.5	protein_coding	protein_coding	protein_coding	protein_coding	4	178	2	3.50562	3.8849600000000004	4.2643	3.3042e-5	2.41647e-5	0.00485198	0.00385018
chr15	63265697	63265796	6041527	0	+	0.292929	(0.28,0.32]	chr15	575291	22	UTR3	UTR3:EXON_MRNA	RAB8B	ENSG00000166128.13	ENST00000321437.9	protein_coding	protein_coding	protein_coding	protein_coding	1	54	2	3.08462	3.884945	4.68527	0.00819419	0.0078976	0.0810802	0.076155
chr4	55413224	55413322	1960766	0	+	0.316327	(0.28,0.32]	chr4	196561	6	INTRON	INTRON	TMEM165	ENSG00000134851.13	ENST00000381334.10:ENST00000506198.5:ENST00000508404.5:ENST00000511710.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	51	2	3.43186	3.884755	4.33765	0.039714	0.00160646	0.143072	0.0367961
chr16	24212463	24212562	6327551	0	+	0.40404	(0.378,0.408]	chr16	605806	41	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1	protein_coding	protein_coding	protein_coding	protein_coding	2	93	2	3.76774	3.8847199999999997	4.0017	4.21442e-4	7.73853e-5	0.0189827	0.00735438
chr16	89456187	89456287	6543258	0	-	0.55	(0.515,0.57]	chr16	634281	245	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	104	2	3.79065	3.88433	3.97801	9.14583e-5	7.49445e-6	0.00850096	0.00195238
chr2	26798943	26799042	715883	0	+	0.323232	(0.32,0.35]	chr2	82684	45	INTRON	INTRON	CENPA	ENSG00000115163.15	ENST00000460030.1	protein_coding	processed_transcript	protein_coding	processed_transcript	2	61	2	2.7493	3.884235	5.01917	0.0055659	0.00296357	0.0648867	0.0500135
chr20	62332171	62332271	7361325	0	-	0.58	(0.57,1]	chr20	750960	4	SS5_PROX	SS5_PROX:INTRON	LAMA5	ENSG00000130702.15	ENST00000252999.7	protein_coding	protein_coding	protein_coding	protein_coding	6	98	2	3.06332	3.88423	4.70514	6.87247e-6	2.16864e-7	0.0018635	2.38737e-4
chr1	26881671	26881765	405523	0	-	0.510638	(0.476,0.515]	chr1	48764	7	EXON_LNCRNA	EXON_LNCRNA:INTRON	GPN2:ENSG00000289554	ENSG00000142751.15:ENSG00000289554.1	ENST00000374135.9:ENST00000374133.3:ENST00000477418.2:ENST00000687749.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	3	70	2	2.01618	3.884105	5.75203	0.0180082	4.51048e-5	0.106756	0.0054649
chr2	53865998	53866084	1119469	0	-	0.302326	(0.28,0.32]	chr2	119850	6	EXON_MRNA	EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PSME4	ENSG00000068878.15	ENST00000404125.6:ENST00000389993.7:ENST00000476586.5:ENST00000488687.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	63	2	2.51426	3.88407	5.25388	0.00781326	0.00385849	0.0788246	0.0542786
chr4	169700120	169700220	2080682	0	+	0.32	(0.28,0.32]	chr4	205662	20	INTRON	INTRON	CLCN3	ENSG00000109572.15	ENST00000347613.8:ENST00000360642.7:ENST00000513761.6:ENST00000613795.4:ENST00000507875.5:ENST00000515420.1	protein_coding	protein_coding	protein_coding	protein_coding	2	63	2	2.51426	3.88407	5.25388	0.00781326	0.00385849	0.0788246	0.0542786
chr21	37366685	37366772	7406218	0	+	0.666667	(0.57,1]	chr21	754839	1	INTRON	INTRON	DYRK1A	ENSG00000157540.22	ENST00000646523.1:ENST00000647425.1	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	2.89463	3.88398	4.87333	0.00788262	3.21412e-4	0.076155	0.0159645
chr5	34930264	34930361	2337364	0	+	0.587629	(0.57,1]	chr5	225723	4	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	DNAJC21	ENSG00000168724.17	ENST00000648817.1:ENST00000382021.2:ENST00000642851.1:ENST00000642675.1:ENST00000644357.1:ENST00000642285.1:ENST00000646714.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	28	2	2.89463	3.88398	4.87333	0.00788262	3.21412e-4	0.076155	0.0159645
chr11	108367205	108367305	4858609	0	+	0.6	(0.57,1]	chr11	453406	18	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ATM	ENSG00000149311.20	ENST00000675843.1:ENST00000683174.1:ENST00000452508.6:ENST00000278616.9:ENST00000683524.1:ENST00000684152.1:ENST00000682286.1:ENST00000682302.1:ENST00000684447.1:ENST00000638786.2:ENST00000684180.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	28	2	3.09313	3.88378	4.67443	0.00369015	8.07515e-4	0.0535094	0.0258804
chrX	155883724	155883823	7740818	0	+	0.606061	(0.57,1]	chrX	792614	19	INTRON	INTRON	VAMP7	ENSG00000124333.16	ENST00000286448.12:ENST00000479687.6:ENST00000488344.6:ENST00000463317.6:ENST00000262640.11:ENST00000460621.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	37	2	2.42282	3.8837200000000003	5.34462	0.00879576	2.48598e-5	0.0790073	0.00391773
chr2	99478048	99478148	1189762	0	-	0.49	(0.476,0.515]	chr2	127721	127	INTRON	INTRON	REV1	ENSG00000135945.10	ENST00000393445.7:ENST00000258428.8:ENST00000413697.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	41	2	3.07422	3.8837099999999998	4.6932	0.00753088	0.00506023	0.074841	0.0646039
chr2	158483997	158484097	897410	0	+	0.44	(0.408,0.44]	chr2	99341	253	INTRON	INTRON	PKP4	ENSG00000144283.23	ENST00000389759.8:ENST00000426248.7:ENST00000389757.7:ENST00000457109.5:ENST00000452162.5:ENST00000411900.5:ENST00000421462.5:ENST00000462335.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	59	2	2.26792	3.88363	5.49934	0.0179973	1.5076e-4	0.106756	0.0106137
chr5	150507239	150507339	2519896	0	+	0.43	(0.408,0.44]	chr5	241017	86	INTRON	INTRON	NDST1	ENSG00000070614.15	ENST00000522491.1:ENST00000519157.1:ENST00000524161.1:ENST00000523767.5:ENST00000518299.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	59	2	2.26792	3.88363	5.49934	0.0179973	1.5076e-4	0.106756	0.0106137
chr4	459600	459700	2092775	0	-	0.49	(0.476,0.515]	chr4	206783	148	INTRON	INTRON	ABCA11P:ZNF721	ENSG00000251595.7:ENSG00000182903.16	ENST00000451020.6:ENST00000514396.5:ENST00000507854.1:ENST00000515578.5:ENST00000506646.5:ENST00000507078.1:ENST00000511833.3:ENST00000338977.5:ENST00000505900.1	protein_coding	protein_coding	protein_coding:transcribed_processed_pseudogene	protein_coding:nonsense_mediated_decay:processed_transcript	1	41	2	2.73205	3.883355	5.03466	0.0159328	0.00252065	0.109464	0.0446195
chr9	112059382	112059481	4315607	0	-	0.50505	(0.476,0.515]	chr9	396906	3	INTRON	INTRON	SUSD1	ENSG00000106868.17	ENST00000374270.8:ENST00000374263.7:ENST00000355396.7:ENST00000374264.6	protein_coding	protein_coding	protein_coding	protein_coding	1	41	2	2.73205	3.883355	5.03466	0.0159328	0.00252065	0.109464	0.0446195
chr20	35692670	35692770	7336043	0	-	0.44	(0.408,0.44]	chr20	747359	3	SS3_PROX	SS3_PROX:INTRON	NFS1	ENSG00000244005.13	ENST00000374092.9:ENST00000374085.5:ENST00000397425.5:ENST00000440385.5:ENST00000541387.5:ENST00000413203.5:ENST00000456462.5:ENST00000419569.5:ENST00000421540.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	48	2	3.33067	3.883235	4.4358	0.00893097	0.0024459	0.0849778	0.0445752
chr7	103299766	103299855	3373131	0	+	0.426966	(0.408,0.44]	chr7	315709	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PMPCB	ENSG00000105819.14	ENST00000249269.9:ENST00000428154.5:ENST00000456433.5:ENST00000443722.5:ENST00000444457.5:ENST00000498530.5:ENST00000453466.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	48	2	3.33067	3.883235	4.4358	0.00893097	0.0024459	0.0849778	0.0445752
chr12	132821795	132821895	5450150	0	-	0.43	(0.408,0.44]	chr12	522104	4	SS5_PROX	SS5_PROX:INTRON	GOLGA3	ENSG00000090615.16	ENST00000204726.9:ENST00000450791.8:ENST00000688114.1:ENST00000691696.1:ENST00000691636.1:ENST00000690897.1:ENST00000456883.7:ENST00000545875.4:ENST00000688251.1:ENST00000692951.1:ENST00000686751.1:ENST00000685580.1:ENST00000687165.1:ENST00000692384.1:ENST00000685120.1:ENST00000689813.1:ENST00000693112.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	41	2	3.08738	3.88316	4.67894	0.0087648	0.00478231	0.0788605	0.0636201
chrX	41120772	41120872	7644415	0	+	0.41	(0.408,0.44]	chrX	782230	343	INTRON	INTRON	USP9X	ENSG00000124486.14	ENST00000324545.9:ENST00000378308.7	protein_coding	protein_coding	protein_coding	protein_coding	1	41	2	3.08738	3.88316	4.67894	0.0087648	0.00478231	0.0788605	0.0636201
chr1	193158964	193159061	284990	0	+	0.309278	(0.28,0.32]	chr1	32812	23	EXON_LNCRNA	EXON_LNCRNA:INTRON	CDC73	ENSG00000134371.14	ENST00000649895.1:ENST00000643006.1:ENST00000367435.5:ENST00000650197.1:ENST00000648071.1:ENST00000635846.1:ENST00000649606.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	97	2	1.95608	3.88294	5.8098	0.00845157	5.67703e-4	0.0828457	0.0220072
chr2	219231641	219231736	1019811	0	+	0.431579	(0.408,0.44]	chr2	108856	14	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	ANKZF1	ENSG00000163516.14	ENST00000453432.5:ENST00000409849.5:ENST00000323348.10:ENST00000461731.5:ENST00000467884.5:ENST00000474225.5:ENST00000475202.5:ENST00000477479.5:ENST00000496346.5:ENST00000463792.5:ENST00000435521.5:ENST00000486203.5:ENST00000416565.1:ENST00000410034.7:ENST00000447157.5:ENST00000436226.1:ENST00000491181.5:ENST00000465550.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	67	2	2.57365	3.882835	5.19202	0.00172241	0.0016671	0.0383099	0.0369207
chr5	28940179	28940279	2331154	0	+	0.42	(0.408,0.44]	chr5	225139	130	INTRON	INTRON	LINC02109	ENSG00000259786.7	ENST00000658190.1	lncRNA	lncRNA	lncRNA	lncRNA	1	41	2	2.74518	3.8827299999999996	5.02028	0.0152229	0.00303216	0.108535	0.0493883
chr7	64800367	64800467	3320404	0	+	0.27	[0,0.28]	chr7	308703	54	INTRON	INTRON	ZNF138	ENSG00000197008.10	ENST00000359735.7:ENST00000440155.6:ENST00000494380.5:ENST00000307355.12:ENST00000437743.1:ENST00000440598.2:ENST00000430838.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	51	2	3.00498	3.8823100000000004	4.75964	0.0232081	0.00876063	0.118148	0.0846118
chr7	107538731	107538830	3612774	0	-	0.272727	[0,0.28]	chr7	336704	110	INTRON	INTRON	COG5	ENSG00000164597.15	ENST00000297135.9:ENST00000347053.8:ENST00000393603.7:ENST00000475638.6:ENST00000605888.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	51	2	3.00498	3.8823100000000004	4.75964	0.0232081	0.00876063	0.118148	0.0846118
chr8	111026113	111026212	4027460	0	-	0.232323	[0,0.28]	chr8	367860	31	INTRON	INTRON	LINC01608	ENSG00000253877.6	ENST00000670392.1:ENST00000658597.1:ENST00000662310.1:ENST00000671489.1:ENST00000668858.1:ENST00000669698.1:ENST00000665803.1:ENST00000658028.1:ENST00000664704.1:ENST00000661954.1:ENST00000661561.1:ENST00000658081.1:ENST00000667145.1:ENST00000658119.1:ENST00000524283.5:ENST00000669893.1:ENST00000660015.1:ENST00000668956.1:ENST00000657323.1:ENST00000663408.1:ENST00000653924.1:ENST00000659834.1:ENST00000658508.1:ENST00000669744.1:ENST00000658733.1:ENST00000657532.1:ENST00000665011.1:ENST00000523557.2:ENST00000669997.1:ENST00000663666.1:ENST00000660667.1:ENST00000668936.1	lncRNA	lncRNA	lncRNA	lncRNA	1	51	2	3.00498	3.8823100000000004	4.75964	0.0232081	0.00876063	0.118148	0.0846118
chr4	73066483	73066578	2158892	0	-	0.378947	(0.378,0.408]	chr4	212577	7	INTRON	INTRON	COX18	ENSG00000163626.17	ENST00000295890.8:ENST00000507544.3:ENST00000449739.6:ENST00000510031.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	45	2	2.84663	3.8821950000000003	4.91776	0.0133954	0.00196368	0.0946278	0.0411469
chr7	5209819	5209919	3272158	0	+	0.39	(0.378,0.408]	chr7	304097	98	INTRON	INTRON	WIPI2	ENSG00000157954.15	ENST00000401525.7:ENST00000288828.9:ENST00000404704.7:ENST00000466014.5:ENST00000485854.5:ENST00000382384.6:ENST00000496867.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	45	2	2.84663	3.8821950000000003	4.91776	0.0133954	0.00196368	0.0946278	0.0411469
chr17	64482818	64482918	6815626	0	-	0.32	(0.28,0.32]	chr17	673734	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	POLG2	ENSG00000256525.8	ENST00000539111.7:ENST00000581355.1:ENST00000671755.1:ENST00000673460.1:ENST00000585104.2:ENST00000582501.5:ENST00000577506.5:ENST00000580490.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	53	2	3.00395	3.88213	4.76031	0.0101329	0.00656106	0.0850389	0.0735539
chr1	35621987	35622087	422120	0	-	0.29	(0.28,0.32]	chr1	50860	122	INTRON	INTRON	PSMB2	ENSG00000126067.12	ENST00000373237.4:ENST00000621781.4:ENST00000630477.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	88	2	2.2058	3.882125	5.55845	0.00496409	0.00141854	0.0646039	0.0340865
chr1	11241252	11241352	378316	0	-	0.52	(0.515,0.57]	chr1	44334	3	SS5_PROX	SS5_PROX:INTRON	MTOR	ENSG00000198793.13	ENST00000361445.9	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	3.25412	3.88206	4.51	0.00809449	0.00224554	0.0766625	0.0435144
chr10	131902524	131902624	4536879	0	+	0.2	[0,0.28]	chr10	418858	8	INTRON	INTRON	PPP2R2D	ENSG00000175470.20	ENST00000455566.6:ENST00000616467.4:ENST00000482010.6:ENST00000470416.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	68	2	2.3719	3.88206	5.39222	0.0139689	0.00453865	0.10247	0.0595107
chr15	57092590	57092690	6033857	0	+	0.24	[0,0.28]	chr15	574689	3	INTRON	INTRON	TCF12	ENSG00000140262.18	ENST00000438423.6:ENST00000267811.9:ENST00000333725.10:ENST00000560190.5:ENST00000559609.5:ENST00000557843.5:ENST00000557947.5:ENST00000561152.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	68	2	2.28885	3.881995	5.47514	0.0181093	0.00354561	0.114853	0.0529186
chr10	5892110	5892209	4385196	0	+	0.494949	(0.476,0.515]	chr10	404622	6	INTRON	INTRON	FBH1	ENSG00000134452.20	ENST00000397269.7:ENST00000362091.9:ENST00000470089.5:ENST00000462507.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	58	2	2.31726	3.881895	5.44653	0.015077	2.03754e-4	0.0994339	0.0124395
chr17	39481459	39481559	6607188	0	+	0.48	(0.476,0.515]	chr17	643264	93	INTRON	INTRON	CDK12	ENSG00000167258.15	ENST00000447079.6:ENST00000584632.5:ENST00000430627.6:ENST00000581593.1	protein_coding	protein_coding	protein_coding	protein_coding	2	58	2	2.31726	3.881895	5.44653	0.015077	2.03754e-4	0.0994339	0.0124395
chr3	49090385	49090484	1692203	0	-	0.484848	(0.476,0.515]	chr3	173166	29	INTRON	INTRON	QRICH1	ENSG00000198218.11	ENST00000395443.7:ENST00000357496.6:ENST00000424300.5:ENST00000411682.1:ENST00000450685.5:ENST00000437939.5:ENST00000430979.1	protein_coding	protein_coding	protein_coding	protein_coding	2	89	2	3.77334	3.8817500000000003	3.99016	3.52709e-4	7.96444e-5	0.0174637	0.00742553
chr6	161053961	161054061	3025117	0	+	0.29	(0.28,0.32]	chr6	282325	36	INTRON	INTRON	MAP3K4	ENSG00000085511.20	ENST00000366919.6:ENST00000392142.9:ENST00000542952.5:ENST00000366920.6:ENST00000348824.11:ENST00000544041.5:ENST00000490904.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	77	2	1.85772	3.88157	5.90542	0.0300199	3.92169e-4	0.142135	0.0184748
chr1	85258123	85258223	497322	0	-	0.26	[0,0.28]	chr1	58954	2	SS5_PROX	SS5_PROX:INTRON	C1orf52	ENSG00000162642.14	ENST00000294661.8:ENST00000471115.6:ENST00000344356.5:ENST00000493514.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	82	2	2.06426	3.88146	5.69866	0.0168952	0.00175225	0.110899	0.0376491
chr3	44763277	44763376	1412233	0	+	0.484848	(0.476,0.515]	chr3	148150	10	INTRON	INTRON	KIF15	ENSG00000163808.17	ENST00000438321.5:ENST00000326047.9:ENST00000481166.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	75	2	1.91368	3.88144	5.8492	0.0135123	8.94204e-5	0.101363	0.00844245
chr7	56059768	56059864	3319116	0	+	0.53125	(0.515,0.57]	chr7	308511	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CCT6A	ENSG00000146731.11	ENST00000335503.3:ENST00000275603.9:ENST00000492618.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	38	2	2.65834	3.88141	5.10448	0.0187418	0.0010345	0.117523	0.029231300000000002
chr1	780174	780271	34	0	+	0.309278	(0.28,0.32]	chr1	6	7	INTRON	INTRON	LINC01409	ENSG00000237491.10	ENST00000412115.2:ENST00000655765.1:ENST00000670700.1:ENST00000657896.1:ENST00000429505.6:ENST00000434264.6:ENST00000457084.1:ENST00000658648.1:ENST00000656571.1:ENST00000669749.1:ENST00000665867.1:ENST00000665719.1:ENST00000666217.1:ENST00000651411.1:ENST00000589899.5:ENST00000609830.1:ENST00000443772.2	lncRNA	lncRNA	lncRNA	lncRNA	3	151	2	3.45645	3.8813899999999997	4.30633	1.23958e-4	6.09722e-5	0.00952291	0.00687075
chr1	92841865	92841924	162535	0	+	0.271186	[0,0.28]	chr1	17556	1	UTR3	UTR3:EXON_MRNA	RPL5	ENSG00000122406.14	ENST00000370321.8:ENST00000645119.1:ENST00000644549.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	94	2	1.87045	3.881295	5.89214	0.0191786	9.08725e-4	0.119771	0.0278396
chr4	88769749	88769848	2200077	0	-	0.515152	(0.476,0.515]	chr4	215930	13	INTRON	INTRON	FAM13A	ENSG00000138640.15	ENST00000395002.6:ENST00000264344.10:ENST00000503556.5:ENST00000511976.5:ENST00000508369.5:ENST00000513837.5:ENST00000504836.5:ENST00000507352.1:ENST00000502459.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	58	2	2.365	3.8810450000000003	5.39709	0.0128901	2.55871e-4	0.0926667	0.0142249
chr15	80065808	80065908	6071094	0	+	0.31	(0.28,0.32]	chr15	578304	47	INTRON	INTRON	ZFAND6	ENSG00000086666.19	ENST00000613266.4:ENST00000561060.5:ENST00000559157.5:ENST00000261749.11:ENST00000561012.5:ENST00000564367.5:ENST00000558494.5:ENST00000618205.4:ENST00000560470.5	protein_coding	protein_coding	protein_coding	protein_coding	1	48	2	2.46018	3.8808549999999995	5.30153	0.0375904	0.00332518	0.156054	0.0512081
chr1	16331998	16332098	382415	0	-	0.37	(0.35,0.378]	chr1	44888	162	INTRON	INTRON	FBXO42	ENSG00000037637.11	ENST00000375592.8	protein_coding	protein_coding	protein_coding	protein_coding	2	66	2	1.75561	3.8808249999999997	6.00604	0.0739399	1.74719e-5	0.190914	0.00318005
chr2	159722038	159722138	899580	0	+	0.33	(0.32,0.35]	chr2	99520	59	INTRON	INTRON	MARCHF7	ENSG00000136536.15	ENST00000539065.5:ENST00000259050.8:ENST00000409175.6:ENST00000421037.1:ENST00000473749.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	82	2	2.02327	3.88075	5.73823	0.00956045	4.5635e-4	0.0863913	0.0196892
chr19	7969189	7969289	7130440	0	-	0.44	(0.408,0.44]	chr19	718365	10	INTRON	INTRON	ELAVL1	ENSG00000066044.15	ENST00000407627.7:ENST00000596154.5:ENST00000596459.5:ENST00000593807.1	protein_coding	protein_coding	protein_coding	protein_coding	1	45	2	3.05705	3.8805750000000003	4.7041	0.00658331	0.00381677	0.0701901	0.0562562
chr1	241866132	241866230	344560	0	+	0.489796	(0.476,0.515]	chr1	40133	43	INTRON	INTRON	EXO1	ENSG00000174371.17	ENST00000366548.8:ENST00000348581.9:ENST00000518483.5	protein_coding	protein_coding	protein_coding	protein_coding	3	66	2	2.01953	3.88054	5.74155	0.0163662	1.47804e-4	0.109586	0.0111067
chr10	37855095	37855195	4602574	0	-	0.31	(0.28,0.32]	chr10	423985	166	INTRON	INTRON	ZNF248	ENSG00000198105.16	ENST00000615949.6:ENST00000485560.5:ENST00000395867.8:ENST00000357328.8:ENST00000611278.4:ENST00000374648.7:ENST00000395873.7:ENST00000395874.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	47	2	3.02632	3.8805300000000003	4.73474	0.0162835	0.0071944	0.101453	0.0756118
chr14	19086523	19086623	5655273	0	+	0.3	(0.28,0.32]	chr14	539025	113	INTRON	INTRON	DUXAP9	ENSG00000225210.10	ENST00000547220.5:ENST00000610585.4:ENST00000621361.4:ENST00000619938.1:ENST00000644980.1:ENST00000619210.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	1	47	2	3.02632	3.8805300000000003	4.73474	0.0162835	0.0071944	0.101453	0.0756118
chr15	83449677	83449777	6082003	0	+	0.29	(0.28,0.32]	chr15	579031	17	INTRON	INTRON	SH3GL3	ENSG00000140600.17	ENST00000492099.1:ENST00000427482.7:ENST00000563901.5:ENST00000324537.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	47	2	3.02632	3.8805300000000003	4.73474	0.0162835	0.0071944	0.101453	0.0756118
chr3	31590533	31590632	1391976	0	+	0.30303	(0.28,0.32]	chr3	145698	101	INTRON	INTRON	STT3B	ENSG00000163527.10	ENST00000453168.5:ENST00000295770.4:ENST00000423527.5:ENST00000462235.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	47	2	3.02632	3.8805300000000003	4.73474	0.0162835	0.0071944	0.101453	0.0756118
chr14	30922803	30922903	5856829	0	-	0.34	(0.32,0.35]	chr14	556459	33	INTRON	INTRON	STRN3	ENSG00000196792.12	ENST00000355683.9:ENST00000357479.10:ENST00000555358.5:ENST00000366206.2:ENST00000556577.1:ENST00000554991.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	60	2	2.6297	3.880465	5.13123	0.00476699	0.00394704	0.0636201	0.0548259
chr6	154743816	154743916	3001921	0	+	0.24	[0,0.28]	chr6	280737	14	INTRON	INTRON	SCAF8	ENSG00000213079.10	ENST00000367186.7:ENST00000417268.3:ENST00000461219.5:ENST00000367178.8:ENST00000464628.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	68	2	2.24546	3.8801699999999997	5.51488	0.0206502	0.00314116	0.122348	0.0500389
chr11	61156104	61156204	4955681	0	-	0.32	(0.28,0.32]	chr11	465541	108	INTRON	INTRON	VPS37C	ENSG00000167987.11	ENST00000301765.10:ENST00000538036.1:ENST00000536000.1:ENST00000535818.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	47	2	2.60656	3.88007	5.15358	0.0256827	0.0052282	0.133676	0.0633615
chr5	95649265	95649364	2430689	0	+	0.282828	(0.28,0.32]	chr5	233570	8	INTRON	INTRON	RFESD	ENSG00000175449.14	ENST00000511684.5:ENST00000380005.9:ENST00000506212.1:ENST00000311364.8:ENST00000458310.1:ENST00000504893.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	47	2	2.60656	3.88007	5.15358	0.0256827	0.0052282	0.133676	0.0633615
chr7	127917386	127917486	3405071	0	+	0.31	(0.28,0.32]	chr7	318161	122	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000465900.5:ENST00000486037.1:ENST00000484767.5:ENST00000492840.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	47	2	2.60656	3.88007	5.15358	0.0256827	0.0052282	0.133676	0.0633615
chr8	43068659	43068758	3745974	0	+	0.30303	(0.28,0.32]	chr8	348528	41	INTRON	INTRON	FNTA	ENSG00000168522.13	ENST00000533559.5:ENST00000526755.5:ENST00000302279.8:ENST00000527153.5:ENST00000533383.5:ENST00000533998.5:ENST00000524546.5:ENST00000531266.5:ENST00000533368.1:ENST00000525699.5:ENST00000529687.5:ENST00000533336.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	47	2	2.60656	3.88007	5.15358	0.0256827	0.0052282	0.133676	0.0633615
chr11	14651951	14652051	4743698	0	+	0.27	[0,0.28]	chr11	439279	65	INTRON	INTRON	PDE3B	ENSG00000152270.9	ENST00000282096.9:ENST00000455098.2:ENST00000534317.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	52	2	3.13926	3.88005	4.62084	0.0313633	0.00563224	0.13151	0.0678837
chr8	90237415	90237515	3792466	0	+	0.28	[0,0.28]	chr8	351782	8	INTRON	INTRON	LINC00534	ENSG00000253394.7	ENST00000662145.1:ENST00000655523.1:ENST00000517400.6:ENST00000658299.1:ENST00000663329.1:ENST00000658342.1:ENST00000523283.6:ENST00000655219.1:ENST00000662692.1:ENST00000667296.1:ENST00000667565.1:ENST00000523406.2:ENST00000659030.1:ENST00000653734.1:ENST00000654785.1:ENST00000524361.5:ENST00000668745.1:ENST00000666641.2:ENST00000661519.1:ENST00000671657.1:ENST00000655123.1:ENST00000663098.1:ENST00000670903.1:ENST00000663619.1:ENST00000654946.1	lncRNA	lncRNA	lncRNA	lncRNA	1	52	2	3.13926	3.88005	4.62084	0.0313633	0.00563224	0.13151	0.0678837
chr17	61913262	61913361	6809456	0	-	0.545455	(0.515,0.57]	chr17	672755	8	INTRON	INTRON	INTS2	ENSG00000108506.13	ENST00000251334.7:ENST00000617492.4:ENST00000444766.7:ENST00000646745.1:ENST00000647009.1:ENST00000646954.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	78	2	3.62164	3.879995	4.13835	5.41944e-4	2.53131e-5	0.0215026	0.00394111
chr12	1742207	1742306	5064681	0	+	0.525253	(0.515,0.57]	chr12	477870	113	INTRON	INTRON	ADIPOR2	ENSG00000006831.10	ENST00000537545.1:ENST00000357103.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	39	2	2.76354	3.8799449999999998	4.99635	0.0147344	8.06602e-4	0.0983813	0.0258804
chr16	16658838	16658921	6312455	0	+	0.518072	(0.515,0.57]	chr16	604118	1	INTRON	INTRON	ENSG00000260126	ENSG00000260126.2	ENST00000567465.2	lncRNA	lncRNA	lncRNA	lncRNA	9	264	2	3.49849	3.8798250000000003	4.26116	2.51157e-7	2.026e-7	2.45195e-4	2.27634e-4
chr9	130816253	130816353	4214887	0	+	0.32	(0.28,0.32]	chr9	386427	1014	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000393293.4	protein_coding	protein_coding	protein_coding	protein_coding	2	63	2	2.24061	3.879645	5.51868	0.0194267	0.00162747	0.119831	0.0367966
chr2	175121243	175121343	1271865	0	-	0.28	[0,0.28]	chr2	134439	4	SS5_PROX	SS5_PROX:INTRON	ATF2	ENSG00000115966.18	ENST00000345739.9:ENST00000426833.7:ENST00000264110.7:ENST00000409437.5:ENST00000409635.5:ENST00000435004.6:ENST00000428760.5:ENST00000392544.5:ENST00000417080.5:ENST00000456655.5:ENST00000421438.5:ENST00000429579.5:ENST00000415955.5:ENST00000409499.5:ENST00000435231.6:ENST00000437522.5:ENST00000409833.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	55	2	3.3753	3.879585	4.38387	0.0501911	0.00242466	0.156383	0.0454587
chr11	67430087	67430185	4815101	0	+	0.489796	(0.476,0.515]	chr11	448443	6	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	RPS6KB2	ENSG00000175634.15	ENST00000530623.5:ENST00000556575.5:ENST00000312629.10:ENST00000524814.5:ENST00000524934.5:ENST00000420069.3:ENST00000528964.5:ENST00000525088.5:ENST00000525996.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	70	2	2.17347	3.87946	5.58545	0.010447	1.04881e-4	0.0855102	0.00863456
chr7	100309922	100310022	3586507	0	-	0.5	(0.476,0.515]	chr7	334330	88	INTRON	INTRON	PMS2P1	ENSG00000078319.11	ENST00000685724.1:ENST00000692351.1:ENST00000685541.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	3	70	2	2.17347	3.87946	5.58545	0.010447	1.04881e-4	0.0855102	0.00863456
chr17	31939686	31939785	6595702	0	+	0.535354	(0.515,0.57]	chr17	641540	18	INTRON	INTRON	SUZ12	ENSG00000178691.11	ENST00000322652.10:ENST00000580398.1	protein_coding	protein_coding	protein_coding	protein_coding	3	60	2	2.53705	3.8792299999999997	5.22141	0.00186194	6.44141e-4	0.039946	0.0231685
chr5	98912475	98912575	2683909	0	-	0.52	(0.515,0.57]	chr5	253957	70	INTRON	INTRON	CHD1	ENSG00000153922.11	ENST00000614616.5:ENST00000284049.7	protein_coding	protein_coding	protein_coding	protein_coding	1	41	2	2.34087	3.87921	5.41755	0.0469761	1.1703e-4	0.151917	0.00929802
chr11	86042892	86042992	5014581	0	-	0.28	[0,0.28]	chr11	473022	109	INTRON	INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000630913.2:ENST00000528398.5:ENST00000356360.9:ENST00000534412.5:ENST00000531558.1:ENST00000531930.5:ENST00000532041.5:ENST00000525162.5:ENST00000528256.1:ENST00000528411.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	10	148	2	1.42708	3.879085	6.33109	0.0246086	1.74802e-4	0.131869	0.01216
chr4	757580	757679	1908317	0	+	0.363636	(0.35,0.378]	chr4	191255	125	INTRON	INTRON	PCGF3	ENSG00000185619.18	ENST00000362003.9:ENST00000470161.6:ENST00000430644.5:ENST00000440452.5:ENST00000488032.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	45	2	3.36514	3.879085	4.39303	0.0237246	0.00173699	0.118716	0.03851
chr15	41106311	41106411	6153140	0	-	0.48	(0.476,0.515]	chr15	585431	96	INTRON	INTRON	INO80	ENSG00000128908.18	ENST00000648947.1:ENST00000401393.7:ENST00000558357.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	43	2	2.7646	3.87901	4.99342	0.0162075	0.00139274	0.101453	0.0341261
chr4	105147541	105147627	2010558	0	+	0.488372	(0.476,0.515]	chr4	200351	2	UTR5	UTR5:EXON_MRNA:INTRON	TET2	ENSG00000168769.14	ENST00000305737.6:ENST00000513237.5:ENST00000540549.5:ENST00000265149.9:ENST00000380013.9:ENST00000504042.5:ENST00000413648.2:ENST00000505801.1:ENST00000514870.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	43	2	2.7646	3.87901	4.99342	0.0162075	0.00139274	0.101453	0.0341261
chr1	155767004	155767085	563524	0	-	0.358025	(0.35,0.378]	chr1	67275	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GON4L	ENSG00000116580.20	ENST00000368331.6:ENST00000615926.4:ENST00000437809.5:ENST00000271883.9:ENST00000361040.9:ENST00000622608.2:ENST00000471341.5:ENST00000497369.5:ENST00000490801.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	57	2	2.44701	3.878795	5.31058	0.00900997	0.00160599	0.0851009	0.0364977
chr19	21745941	21746034	7159086	0	-	0.376344	(0.35,0.378]	chr19	723723	5	INTRON	INTRON	ZNF100	ENSG00000197020.12	ENST00000358296.11:ENST00000305570.10:ENST00000594401.1:ENST00000598026.1	protein_coding	protein_coding	protein_coding	protein_coding	2	57	2	2.44701	3.878795	5.31058	0.00900997	0.00160599	0.0851009	0.0364977
chr3	33090902	33090999	1651104	0	-	0.309278	(0.28,0.32]	chr3	169304	6	UTR3	UTR3:EXON_MRNA:INTRON	GLB1:TMPPE	ENSG00000170266.16:ENSG00000188167.9	ENST00000399402.7:ENST00000307363.10:ENST00000307377.12:ENST00000482097.5:ENST00000485698.5:ENST00000498537.5:ENST00000415454.1:ENST00000438227.1:ENST00000440656.1:ENST00000464355.1:ENST00000450835.1:ENST00000436768.1:ENST00000416695.6:ENST00000342462.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	91	2	2.40959	3.8786199999999997	5.34765	0.00287138	0.00207334	0.0474836	0.0422762
chr1	39565878	39565975	427674	0	-	0.412371	(0.408,0.44]	chr1	51909	1	INTRON	INTRON	PABPC4	ENSG00000090621.15	ENST00000677006.1:ENST00000527718.2:ENST00000676859.1:ENST00000372858.8:ENST00000372856.7:ENST00000372857.7:ENST00000372862.7:ENST00000676523.1:ENST00000677548.1:ENST00000678980.1:ENST00000677244.1:ENST00000677609.1:ENST00000679246.1:ENST00000678287.1:ENST00000678625.1:ENST00000470443.6:ENST00000677860.1:ENST00000676863.1:ENST00000678894.1:ENST00000421687.6:ENST00000525669.5:ENST00000513632.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	44	2	2.89795	3.878335	4.85872	0.0110735	0.00221911	0.0873897	0.0435144
chr7	102555070	102555169	3588700	0	-	0.454545	(0.44,0.476]	chr7	335032	93	INTRON	INTRON	POLR2J3	ENSG00000168255.20	ENST00000489144.5:ENST00000464525.5:ENST00000379340.9:ENST00000486319.5:ENST00000503564.5:ENST00000511773.5:ENST00000513506.6:ENST00000508848.5:ENST00000504677.5:ENST00000506060.5:ENST00000502415.5:ENST00000507355.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	65	2	2.26452	3.877745	5.49097	0.00654074	4.8612e-4	0.0735539	0.0203841
chr8	102355178	102355277	4012176	0	-	0.464646	(0.44,0.476]	chr8	367218	77	INTRON	INTRON	UBR5	ENSG00000104517.13	ENST00000520539.6:ENST00000220959.8:ENST00000521922.5	protein_coding	protein_coding	protein_coding	protein_coding	3	65	2	2.26452	3.877745	5.49097	0.00654074	4.8612e-4	0.0735539	0.0203841
chr9	131174818	131174888	4216135	0	+	0.442857	(0.44,0.476]	chr9	386619	1	INTRON	INTRON	NUP214	ENSG00000126883.19	ENST00000695497.1:ENST00000695498.1:ENST00000695496.1:ENST00000695495.1:ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000525980.5:ENST00000526346.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	65	2	2.26452	3.877745	5.49097	0.00654074	4.8612e-4	0.0735539	0.0203841
chr9	136471277	136471375	4374919	0	-	0.459184	(0.44,0.476]	chr9	403079	24	INTRON	INTRON	SEC16A	ENSG00000148396.19	ENST00000290037.10:ENST00000313050.11:ENST00000371706.8:ENST00000684901.1:ENST00000690691.1:ENST00000431893.3	protein_coding	protein_coding	protein_coding	protein_coding	3	65	2	2.26452	3.877745	5.49097	0.00654074	4.8612e-4	0.0735539	0.0203841
chr12	96368027	96368127	5394961	0	-	0.38	(0.378,0.408]	chr12	514463	328	INTRON	INTRON	CDK17	ENSG00000059758.8	ENST00000261211.8:ENST00000543119.6:ENST00000542666.5:ENST00000551816.5:ENST00000552496.5:ENST00000552262.1	protein_coding	protein_coding	protein_coding	protein_coding	1	42	2	3.17089	3.87758	4.58427	0.0128325	0.00357279	0.0926667	0.0548435
chr4	102875370	102875470	2007531	0	+	0.4	(0.378,0.408]	chr4	200252	3	INTRON	INTRON	CISD2	ENSG00000145354.12	ENST00000646632.1:ENST00000273986.10:ENST00000574446.1:ENST00000643561.1:ENST00000503643.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	42	2	3.17089	3.87758	4.58427	0.0128325	0.00357279	0.0926667	0.0548435
chr8	25453628	25453727	3926303	0	-	0.333333	(0.32,0.35]	chr8	359463	17	INTRON	INTRON	KCTD9	ENSG00000104756.16	ENST00000221200.9:ENST00000519665.5:ENST00000523140.5:ENST00000522493.5:ENST00000518067.5:ENST00000518997.5:ENST00000523294.5:ENST00000521458.5:ENST00000524217.1:ENST00000517914.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	82	2	2.0893	3.8774800000000003	5.66566	0.00738971	6.06695e-4	0.0769106	0.0226059
chr10	30339325	30339425	4587543	0	-	0.51	(0.476,0.515]	chr10	422975	19	INTRON	INTRON	MTPAP	ENSG00000107951.15	ENST00000263063.9:ENST00000488290.5:ENST00000417581.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	89	2	3.86502	3.877455	3.88989	2.2858e-4	1.35929e-4	0.0138641	0.0100405
chr7	148835429	148835528	3670271	0	-	0.292929	(0.28,0.32]	chr7	340610	23	INTRON	INTRON	EZH2	ENSG00000106462.12	ENST00000683292.1:ENST00000320356.7:ENST00000492143.5:ENST00000478654.5:ENST00000350995.6:ENST00000460911.5:ENST00000683744.1:ENST00000682317.1:ENST00000682263.1:ENST00000684300.1:ENST00000476773.5:ENST00000483967.5:ENST00000498186.5:ENST00000483012.1:ENST00000682401.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	112	2	3.54995	3.87702	4.20409	0.00157396	4.29699e-5	0.0361918	0.00530629
chr12	69242290	69242389	5163524	0	+	0.282828	(0.28,0.32]	chr12	488988	22	INTRON	INTRON	CPSF6	ENSG00000111605.18	ENST00000435070.7:ENST00000550075.5:ENST00000650046.1:ENST00000456847.7:ENST00000266679.8:ENST00000550987.5:ENST00000551516.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	113	2	1.54386	3.876975	6.21009	0.0227817	1.11538e-4	0.125323	0.00945289
chr8	140634487	140634587	4076556	0	-	0.62	(0.57,1]	chr8	370289	73	INTRON	INTRON	AGO2	ENSG00000123908.12	ENST00000220592.10:ENST00000519980.5:ENST00000523609.5:ENST00000517293.5:ENST00000518019.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	57	2	2.40924	3.8769299999999998	5.34462	6.26777e-4	2.48598e-5	0.0230192	0.00391773
chr5	146482827	146482897	2515874	0	+	0.357143	(0.35,0.378]	chr5	240362	1	SS5_PROX	SS5_PROX:INTRON	TCERG1	ENSG00000113649.13	ENST00000296702.9:ENST00000679501.2:ENST00000394421.7:ENST00000549332.1:ENST00000515203.5:ENST00000506524.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	75	2	1.99351	3.876905	5.7603	0.020841	6.3427e-5	0.111648	0.00658818
chr7	130193521	130193620	3638634	0	-	0.30303	(0.28,0.32]	chr7	338395	3	INTRON	INTRON	TMEM209	ENSG00000146842.17	ENST00000397622.7:ENST00000473456.5:ENST00000462753.5	protein_coding	protein_coding	protein_coding	protein_coding	5	96	2	1.81786	3.876895	5.93593	0.0142986	3.47635e-4	0.104025	0.017378
chr19	39485094	39485151	7068275	0	+	0.385965	(0.378,0.408]	chr19	705954	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	TIMM50	ENSG00000105197.11	ENST00000544017.5:ENST00000601358.5:ENST00000607714.6:ENST00000599794.5:ENST00000597666.5:ENST00000601403.5:ENST00000602028.5:ENST00000597782.5:ENST00000602265.5:ENST00000599733.5:ENST00000594583.2:ENST00000596239.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	42	2	2.63247	3.876875	5.12128	0.0215745	0.00251746	0.123836	0.0446195
chr2	32618683	32618780	733495	0	+	0.381443	(0.378,0.408]	chr2	84708	9	UTR3	UTR3:EXON_MRNA	BIRC6	ENSG00000115760.15	ENST00000421745.7:ENST00000471232.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	42	2	2.63247	3.876875	5.12128	0.0215745	0.00251746	0.123836	0.0446195
chr5	150554228	150554327	2520386	0	+	0.383838	(0.378,0.408]	chr5	241120	10	UTR3	UTR3:EXON_MRNA	NDST1	ENSG00000070614.15	ENST00000261797.7	protein_coding	protein_coding	protein_coding	protein_coding	1	42	2	2.63247	3.876875	5.12128	0.0215745	0.00251746	0.123836	0.0446195
chr6	143183071	143183171	2976410	0	+	0.38	(0.378,0.408]	chr6	279149	175	INTRON	INTRON	AIG1	ENSG00000146416.19	ENST00000367601.8:ENST00000447498.5:ENST00000646199.1:ENST00000357847.9:ENST00000629020.2:ENST00000275235.8:ENST00000494282.6:ENST00000458219.1:ENST00000470265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	42	2	2.63247	3.876875	5.12128	0.0215745	0.00251746	0.123836	0.0446195
chr9	37250294	37250393	4118960	0	+	0.444444	(0.44,0.476]	chr9	375389	634	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000461038.5:ENST00000488607.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	121	2	3.54173	3.8768149999999997	4.2119	7.87235e-5	2.22282e-5	0.00795151	0.00367645
chr7	92772498	92772598	3572619	0	-	0.36	(0.35,0.378]	chr7	332804	464	INTRON	INTRON	CDK6	ENSG00000105810.10	ENST00000424848.3:ENST00000265734.8	protein_coding	protein_coding	protein_coding	protein_coding	1	48	2	3.08431	3.8768000000000002	4.66929	0.0065853	0.00541617	0.0701901	0.066545000000000007
chr2	117993349	117993449	1218245	0	-	0.37	(0.35,0.378]	chr2	129693	69	INTRON	INTRON	CCDC93	ENSG00000125633.11	ENST00000319432.9:ENST00000376300.7:ENST00000460781.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	46	2	2.60341	3.876785	5.15016	0.0275785	9.78549e-4	0.123904	0.0287765
chr16	1359567	1359663	6274241	0	+	0.375	(0.35,0.378]	chr16	599252	13	INTRON	INTRON	GNPTG	ENSG00000090581.11	ENST00000204679.9:ENST00000526820.5:ENST00000683366.1:ENST00000527168.6:ENST00000683887.1:ENST00000529110.2:ENST00000684126.1:ENST00000529957.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	46	2	2.72497	3.876645	5.02832	0.0198266	0.00156444	0.109608	0.0365263
chr3	33809998	33810097	1394493	0	+	0.353535	(0.35,0.378]	chr3	146021	101	INTRON	INTRON	PDCD6IP	ENSG00000170248.15	ENST00000457054.6:ENST00000648706.1:ENST00000435909.5:ENST00000430877.5:ENST00000413073.1:ENST00000307296.8:ENST00000477798.5:ENST00000498147.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	43	2	3.10863	3.8766	4.64457	0.012652	0.00470896	0.0926667	0.0631419
chr14	93331703	93331803	5963925	0	-	0.52	(0.515,0.57]	chr14	566292	352	INTRON	INTRON	BTBD7	ENSG00000011114.15	ENST00000334746.10:ENST00000554565.5:ENST00000298896.7:ENST00000554968.1	protein_coding	protein_coding	protein_coding	protein_coding	1	39	2	2.68833	3.87646	5.06459	0.0184931	6.03964e-4	0.108861	0.0223465
chr2	87512622	87512721	826501	0	+	0.292929	(0.28,0.32]	chr2	92446	29	INTRON	INTRON	CYTOR:ENSG00000284879	ENSG00000222041.12:ENSG00000284879.1	ENST00000642796.1:ENST00000643589.1:ENST00000642451.1:ENST00000646386.1:ENST00000644478.1:ENST00000409139.6:ENST00000331944.10:ENST00000644125.1:ENST00000643743.1:ENST00000644577.1:ENST00000643276.1:ENST00000409898.2:ENST00000419680.6:ENST00000644976.1:ENST00000643070.1:ENST00000646855.1:ENST00000414584.1:ENST00000455131.5:ENST00000646636.1:ENST00000642293.1:ENST00000423846.5:ENST00000644040.1:ENST00000645138.1:ENST00000437561.2:ENST00000629257.1:ENST00000645729.1:ENST00000413202.1	lncRNA	lncRNA	lncRNA	lncRNA	2	115	2	3.68354	3.876385	4.06923	5.5135e-4	1.83227e-4	0.0213455	0.0122816
chr11	66780585	66780684	4811706	0	+	0.525253	(0.515,0.57]	chr11	447956	178	INTRON	INTRON	C11orf80	ENSG00000173715.18	ENST00000524551.5:ENST00000525908.6:ENST00000540737.7:ENST00000527634.5:ENST00000527368.5:ENST00000531400.6:ENST00000642265.1:ENST00000532565.6:ENST00000525449.6:ENST00000360962.10:ENST00000532727.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	39	2	2.90311	3.876235	4.84936	0.0094233	0.00146032	0.0817766	0.0349875
chr15	63567658	63567757	6042552	0	+	0.525253	(0.515,0.57]	chr15	575436	43	INTRON	INTRON	USP3	ENSG00000140455.17	ENST00000540797.5:ENST00000380324.8:ENST00000558157.5:ENST00000561326.5:ENST00000559873.5:ENST00000559192.5:ENST00000268049.11:ENST00000558285.5:ENST00000559257.5:ENST00000538686.6:ENST00000559711.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	39	2	2.90311	3.876235	4.84936	0.0094233	0.00146032	0.0817766	0.0349875
chr10	75172436	75172535	4464221	0	+	0.484848	(0.476,0.515]	chr10	411774	34	INTRON	INTRON	SAMD8	ENSG00000156671.15	ENST00000671730.1:ENST00000671800.1:ENST00000542569.6:ENST00000649316.2:ENST00000372687.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	43	2	2.63168	3.8762	5.12072	0.0237106	8.42139e-4	0.118716	0.0263691
chr17	31899046	31899145	6752895	0	-	0.484848	(0.476,0.515]	chr17	663815	37	INTRON	INTRON	UTP6	ENSG00000108651.10	ENST00000261708.9:ENST00000583408.5:ENST00000490218.6:ENST00000579878.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	43	2	2.63168	3.8762	5.12072	0.0237106	8.42139e-4	0.118716	0.0263691
chr2	47481733	47481824	774327	0	+	0.483516	(0.476,0.515]	chr2	87323	5	INTRON	INTRON	MSH2	ENSG00000095002.15	ENST00000543555.6:ENST00000644092.1:ENST00000645339.1:ENST00000646415.1:ENST00000645506.1:ENST00000406134.5:ENST00000233146.7:ENST00000644900.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	43	2	2.63168	3.8762	5.12072	0.0237106	8.42139e-4	0.118716	0.0263691
chr7	76588905	76589004	3340757	0	+	0.373737	(0.35,0.378]	chr7	311170	370	INTRON	INTRON	ENSG00000205485	ENSG00000205485.13	ENST00000418663.5:ENST00000450661.1:ENST00000423084.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	5	209	2	3.50856	3.876135	4.24371	2.50921e-5	6.36347e-7	0.00413384	4.36324e-4
chr1	185067672	185067772	275780	0	+	0.36	(0.35,0.378]	chr1	32263	210	INTRON	INTRON	RNF2	ENSG00000121481.11	ENST00000367509.8:ENST00000498201.1:ENST00000367510.8:ENST00000453650.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	43	2	2.6498	3.87603	5.10226	0.0210137	0.00327038	0.122348	0.0508595
chr11	77708225	77708325	4994843	0	-	0.45	(0.44,0.476]	chr11	472017	48	INTRON	INTRON	RSF1	ENSG00000048649.14	ENST00000308488.11:ENST00000526324.5:ENST00000528095.5:ENST00000534794.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	41	2	3.14559	3.87603	4.60647	0.0102339	0.00384923	0.0850389	0.0562562
chr3	9363902	9363970	1358637	0	+	0.485294	(0.476,0.515]	chr3	142592	2	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	THUMPD3	ENSG00000134077.16	ENST00000417036.1:ENST00000419437.5:ENST00000345094.7:ENST00000452837.7:ENST00000515662.6	protein_coding	protein_coding	protein_coding	protein_coding	1	43	2	2.82673	3.87601	4.92529	0.0134403	0.00180221	0.0946278	0.0392772
chr6	17702484	17702584	3066170	0	-	0.51	(0.476,0.515]	chr6	284872	135	INTRON	INTRON	NUP153	ENSG00000124789.12	ENST00000613258.4:ENST00000537253.5:ENST00000262077.3	protein_coding	protein_coding	protein_coding	protein_coding	1	43	2	2.82673	3.87601	4.92529	0.0134403	0.00180221	0.0946278	0.0392772
chr6	20466655	20466755	2828097	0	+	0.49	(0.476,0.515]	chr6	265583	266	INTRON	INTRON	E2F3	ENSG00000112242.16	ENST00000346618.8:ENST00000535432.2	protein_coding	protein_coding	protein_coding	protein_coding	1	43	2	2.82673	3.87601	4.92529	0.0134403	0.00180221	0.0946278	0.0392772
chr17	60310621	60310721	6805059	0	-	0.51	(0.476,0.515]	chr17	672360	55	INTRON	INTRON	USP32	ENSG00000170832.13	ENST00000300896.9:ENST00000590133.5:ENST00000589335.5:ENST00000393003.7:ENST00000588898.1:ENST00000589761.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	44	2	2.40608	3.875985	5.34589	0.0425709	3.224e-4	0.148082	0.0159645
chr2	188283889	188283988	1295361	0	-	0.222222	[0,0.28]	chr2	135673	72	INTRON	INTRON	LINC01090	ENSG00000231689.3	ENST00000434418.2:ENST00000632331.1:ENST00000415357.1	lncRNA	lncRNA	lncRNA	lncRNA	1	50	2	2.74901	3.87582	5.00263	0.0188843	0.013055	0.118148	0.093385
chr7	72907376	72907476	3330072	0	+	0.18	[0,0.28]	chr7	309565	159	INTRON	INTRON	POM121	ENSG00000196313.13	ENST00000627934.3:ENST00000395270.5	protein_coding	protein_coding	protein_coding	protein_coding	1	50	2	2.74901	3.87582	5.00263	0.0188843	0.013055	0.118148	0.093385
chr2	26363701	26363801	715187	0	+	0.29	(0.28,0.32]	chr2	82572	170	INTRON	INTRON	SELENOI	ENSG00000138018.19	ENST00000442141.5:ENST00000260585.12:ENST00000447170.1	protein_coding	protein_coding	protein_coding	protein_coding	4	88	2	2.23291	3.875795	5.51868	0.00444008	0.00162747	0.0610799	0.0367966
chrX	110173451	110173549	7701751	0	+	0.418367	(0.408,0.44]	chrX	788168	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	TMEM164	ENSG00000157600.12	ENST00000372072.7:ENST00000372073.5:ENST00000372068.7:ENST00000288381.4:ENST00000464177.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	296	2	3.57404	3.875745	4.17745	1.39657e-6	7.00913e-8	7.73235e-4	1.15623e-4
chr12	71755488	71755588	5168729	0	+	0.58	(0.57,1]	chr12	489645	2	SS5_PROX	SS5_PROX:INTRON	RAB21	ENSG00000080371.6	ENST00000261263.5	protein_coding	protein_coding	protein_coding	protein_coding	2	36	2	2.95123	3.87567	4.80011	8.39007e-4	6.07135e-4	0.0263691	0.0226059
chr22	21783763	21783863	7560541	0	-	0.58	(0.57,1]	chr22	773360	104	INTRON	INTRON	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	2	36	2	2.95123	3.87567	4.80011	8.39007e-4	6.07135e-4	0.0263691	0.0226059
chr1	29016167	29016267	59979	0	+	0.5	(0.476,0.515]	chr1	7660	4	SS5_PROX	SS5_PROX:INTRON	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000647918.1:ENST00000646800.1:ENST00000644342.1:ENST00000646189.1:ENST00000482464.6:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000646260.1:ENST00000373798.5:ENST00000644600.1:ENST00000649674.1:ENST00000643173.1:ENST00000343067.9:ENST00000644780.1:ENST00000650265.1:ENST00000648181.1:ENST00000643604.1:ENST00000648891.1:ENST00000373797.2:ENST00000349460.9:ENST00000645184.1:ENST00000645111.1:ENST00000643302.1:ENST00000645999.1:ENST00000642643.1:ENST00000636666.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	225	2	2.75501	3.87561	4.99621	2.36879e-5	3.45757e-7	0.00380885	3.206e-4
chr5	139592569	139592669	2500816	0	+	0.39	(0.378,0.408]	chr5	239026	298	INTRON	INTRON	UBE2D2	ENSG00000131508.16	ENST00000511725.5:ENST00000505007.5:ENST00000398733.8:ENST00000510470.1:ENST00000398734.8:ENST00000505548.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	56	2	2.74646	3.875525	5.00459	0.00371142	0.00271684	0.0535094	0.0481064
chr1	228398382	228398481	651920	0	-	0.444444	(0.44,0.476]	chr1	77191	8	INTRON	INTRON	TRIM11	ENSG00000154370.16	ENST00000493030.6:ENST00000284551.11:ENST00000602582.5:ENST00000366699.3:ENST00000602308.1	protein_coding	protein_coding	protein_coding	protein_coding	1	41	2	2.66433	3.8754600000000003	5.08659	0.0194358	0.00226401	0.119831	0.0425438
chr16	23644117	23644216	6323262	0	+	0.464646	(0.44,0.476]	chr16	605586	7	INTRON	INTRON	DCTN5	ENSG00000166847.10	ENST00000300087.7:ENST00000563998.5:ENST00000566053.5:ENST00000568589.5:ENST00000563188.5:ENST00000568272.1:ENST00000566298.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	41	2	2.66433	3.8754600000000003	5.08659	0.0194358	0.00226401	0.119831	0.0425438
chr5	14697286	14697385	2321220	0	+	0.464646	(0.44,0.476]	chr5	224848	44	UTR3	UTR3:EXON_MRNA	OTULIN	ENSG00000154124.5	ENST00000284274.5	protein_coding	protein_coding	protein_coding	protein_coding	1	41	2	2.66433	3.8754600000000003	5.08659	0.0194358	0.00226401	0.119831	0.0425438
chr4	48668369	48668468	2138500	0	-	0.333333	(0.32,0.35]	chr4	210994	146	INTRON	INTRON	FRYL	ENSG00000075539.15	ENST00000358350.9:ENST00000503238.6:ENST00000507711.5:ENST00000505759.1:ENST00000502520.5:ENST00000505437.5:ENST00000514783.5:ENST00000509886.5:ENST00000515684.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	48	2	2.57263	3.875425	5.17822	0.0312297	0.00115625	0.13151	0.0313436
chr22	20573677	20573772	7480034	0	+	0.368421	(0.35,0.378]	chr22	763023	1	EXON_MRNA	EXON_MRNA:INTRON	MED15	ENSG00000099917.17	ENST00000433831.5:ENST00000292733.11:ENST00000263205.11:ENST00000406969.5:ENST00000382974.6:ENST00000492381.5:ENST00000478831.5:ENST00000489651.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	87	2	1.85092	3.875255	5.89959	0.0114682	1.52893e-4	0.0956037	0.0112857
chr16	89786648	89786747	6544504	0	-	0.424242	(0.408,0.44]	chr16	634547	11	INTRON	INTRON	FANCA	ENSG00000187741.16	ENST00000561667.2:ENST00000389301.8:ENST00000568369.6:ENST00000564475.6:ENST00000696275.1:ENST00000696287.1:ENST00000696286.1:ENST00000696274.1:ENST00000696291.1:ENST00000696276.1:ENST00000567205.2:ENST00000567284.7:ENST00000696277.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	184	2	2.77322	3.8751749999999996	4.97713	1.08448e-4	4.73214e-7	0.00880907	3.95225e-4
chr12	7920221	7920320	5264273	0	-	0.323232	(0.32,0.35]	chr12	501680	11	UTR3	UTR3:EXON_MRNA	SLC2A3	ENSG00000059804.16	ENST00000075120.12:ENST00000486749.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	45	2	2.56618	3.875165	5.18415	0.0274185	0.00333629	0.136498	0.0512081
chr10	28574810	28574910	4414222	0	+	0.42	(0.408,0.44]	chr10	407148	364	INTRON	INTRON	WAC	ENSG00000095787.24	ENST00000680735.1:ENST00000375664.8:ENST00000428935.6:ENST00000651598.1:ENST00000628285.3:ENST00000681112.1:ENST00000679570.1:ENST00000375646.5:ENST00000354911.9:ENST00000347934.8:ENST00000420266.6:ENST00000651885.1:ENST00000651441.1:ENST00000679398.1:ENST00000424454.5:ENST00000442148.6:ENST00000448193.5:ENST00000414108.6:ENST00000679428.1:ENST00000439676.5:ENST00000345541.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	90	2	2.5052	3.8751049999999996	5.24501	0.00137378	5.05909e-4	0.0336718	0.0202328
chr1	244674106	244674206	347921	0	+	0.49	(0.476,0.515]	chr1	40357	177	INTRON	INTRON	DESI2	ENSG00000121644.19	ENST00000263831.11:ENST00000302550.16:ENST00000418162.1	protein_coding	protein_coding	protein_coding	protein_coding	3	65	2	2.25138	3.875025	5.49867	0.00692374	4.28561e-4	0.0753208	0.0189958
chr11	119007755	119007854	4874072	0	+	0.40404	(0.378,0.408]	chr11	455385	56	INTRON	INTRON	CENATAC	ENSG00000186166.9	ENST00000334418.6:ENST00000524670.5:ENST00000526463.5:ENST00000532132.5:ENST00000580556.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	56	2	2.23831	3.875025	5.51174	0.0179575	5.93655e-4	0.114265	0.0225024
chrX	78114855	78114953	7687127	0	+	0.367347	(0.35,0.378]	chrX	787011	3	INTRON	INTRON	PGK1	ENSG00000102144.15	ENST00000644362.1:ENST00000491291.1:ENST00000373316.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	44	2	3.26794	3.8748899999999997	4.48184	0.0191702	0.00257067	0.108861	0.0466761
chr1	193251786	193251884	285935	0	+	0.346939	(0.32,0.35]	chr1	32871	12	UTR3	UTR3:EXON_MRNA	CDC73	ENSG00000134371.14	ENST00000643006.1:ENST00000367435.5:ENST00000635846.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	139	2	3.18611	3.874885	4.56366	6.68157e-4	4.12717e-6	0.0235847	0.00135113
chr5	54061164	54061263	2618417	0	-	0.59596	(0.57,1]	chr5	248837	130	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	101	2	3.63336	3.874865	4.11637	1.24433e-6	3.32545e-7	6.49169e-4	3.12285e-4
chr10	87509731	87509830	4482469	0	+	0.262626	[0,0.28]	chr10	412504	8	INTRON	INTRON	MINPP1	ENSG00000107789.16	ENST00000371994.8:ENST00000371996.9:ENST00000536010.1	protein_coding	protein_coding	protein_coding	protein_coding	1	50	2	2.80396	3.874785	4.94561	0.0161429	0.0150263	0.109464	0.0994339
chr11	117235952	117236050	4869466	0	+	0.520408	(0.515,0.57]	chr11	454492	12	INTRON	INTRON	RNF214	ENSG00000167257.11	ENST00000534428.5:ENST00000300650.9:ENST00000529869.1:ENST00000531452.5:ENST00000531287.5:ENST00000530849.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	37	2	2.98677	3.874605	4.76244	0.00632549	0.00362147	0.0722266	0.0533855
chr3	47826774	47826846	1420212	0	+	0.527778	(0.515,0.57]	chr3	149221	3	INTRON	INTRON	DHX30	ENSG00000132153.15	ENST00000395745.6:ENST00000445061.6:ENST00000441384.5:ENST00000348968.8:ENST00000446256.6:ENST00000619982.4:ENST00000457607.1:ENST00000471082.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	37	2	2.98677	3.874605	4.76244	0.00632549	0.00362147	0.0722266	0.0533855
chr6	149625577	149625677	3245890	0	-	0.54	(0.515,0.57]	chr6	301588	19	INTRON	INTRON	KATNA1	ENSG00000186625.14	ENST00000335643.12:ENST00000367411.7:ENST00000335647.9:ENST00000470620.1:ENST00000444282.5:ENST00000420200.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	37	2	2.9114	3.8745200000000004	4.83764	0.00826019	0.00279527	0.0813266	0.0469265
chr11	33718443	33718541	4941155	0	-	0.397959	(0.378,0.408]	chr11	462922	11	EXON_MRNA	EXON_MRNA:INTRON	CD59	ENSG00000085063.17	ENST00000642928.2:ENST00000651785.1:ENST00000652678.1:ENST00000395850.9:ENST00000528987.1:ENST00000652086.1:ENST00000426650.7:ENST00000533403.6:ENST00000415002.7:ENST00000445143.6:ENST00000437761.6:ENST00000351554.8:ENST00000527577.5:ENST00000643183.1:ENST00000528700.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	45	2	2.46373	3.87447	5.28521	0.0382831	4.52877e-4	0.141795	0.0192381
chr17	43132498	43132598	6613358	0	+	0.38	(0.378,0.408]	chr17	644734	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	NBR2	ENSG00000198496.12	ENST00000657841.1:ENST00000460115.5:ENST00000356906.7:ENST00000467245.5	lncRNA	lncRNA	lncRNA	lncRNA	1	45	2	2.46373	3.87447	5.28521	0.0382831	4.52877e-4	0.141795	0.0192381
chr8	90319061	90319161	3793284	0	+	0.32	(0.28,0.32]	chr8	351786	719	INTRON	INTRON	LINC00534	ENSG00000253394.7	ENST00000662145.1:ENST00000655523.1:ENST00000517400.6:ENST00000658299.1:ENST00000663329.1:ENST00000658342.1:ENST00000523283.6:ENST00000655219.1:ENST00000662692.1:ENST00000667296.1:ENST00000667565.1:ENST00000523406.2:ENST00000659030.1:ENST00000653734.1:ENST00000654785.1:ENST00000524361.5:ENST00000668745.1:ENST00000666641.2:ENST00000661519.1:ENST00000671657.1:ENST00000655123.1:ENST00000663098.1:ENST00000670903.1:ENST00000654946.1	lncRNA	lncRNA	lncRNA	lncRNA	2	63	2	2.59504	3.87431	5.15358	0.00582473	0.0052282	0.0687439	0.0633615
chr1	176093474	176093573	590565	0	-	0.474747	(0.44,0.476]	chr1	70920	72	INTRON	INTRON	COP1	ENSG00000143207.21	ENST00000367669.8:ENST00000367667.5:ENST00000367666.5:ENST00000649803.1:ENST00000308769.12:ENST00000459744.5:ENST00000498306.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	43	2	2.39604	3.874155	5.35227	0.0404291	8.47974e-4	0.161534	0.0267232
chr12	121330582	121330602	5436959	0	-	0.45	(0.44,0.476]	chr12	519890	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	ANAPC5	ENSG00000089053.13	ENST00000261819.8:ENST00000535641.5:ENST00000541887.5:ENST00000534976.5:ENST00000441917.6:ENST00000539079.5:ENST00000544314.5:ENST00000535482.1:ENST00000545218.5:ENST00000535472.5:ENST00000538334.1:ENST00000538223.1:ENST00000539612.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	43	2	2.39604	3.874155	5.35227	0.0404291	8.47974e-4	0.161534	0.0267232
chr11	69666148	69666246	4974991	0	-	0.55102	(0.515,0.57]	chr11	469826	7	UTR3	UTR3:EXON_MRNA:INTRON	LTO1	ENSG00000149716.13	ENST00000538554.6:ENST00000569105.5:ENST00000279147.9:ENST00000536870.5:ENST00000544096.5:ENST00000537272.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	107	2	3.74861	3.8741450000000004	3.99968	5.71792e-5	1.50679e-5	0.00617842	0.00311444
chr1	51380004	51380104	452936	0	-	0.45	(0.44,0.476]	chr1	54311	136	INTRON	INTRON	EPS15	ENSG00000085832.17	ENST00000371733.8:ENST00000371730.6	protein_coding	protein_coding	protein_coding	protein_coding	2	54	2	2.44514	3.87402	5.3029	0.0087381	0.00102616	0.0845538	0.029231300000000002
chr2	99473063	99473162	1189712	0	-	0.494949	(0.476,0.515]	chr2	127721	77	INTRON	INTRON	REV1	ENSG00000135945.10	ENST00000393445.7:ENST00000258428.8:ENST00000413697.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	41	2	3.13389	3.873955	4.61402	0.00947755	0.00405473	0.0817766	0.0578376
chr2	111837838	111837937	1214400	0	-	0.484848	(0.476,0.515]	chr2	129142	26	INTRON	INTRON	ANAPC1	ENSG00000153107.13	ENST00000427997.5:ENST00000341068.8	protein_coding	protein_coding	protein_coding	protein_coding	1	41	2	3.13389	3.873955	4.61402	0.00947755	0.00405473	0.0817766	0.0578376
chr11	64192877	64192977	4802097	0	+	0.4	(0.378,0.408]	chr11	445249	4	SS3_PROX	SS3_PROX:INTRON	STIP1	ENSG00000168439.17	ENST00000358794.9:ENST00000305218.9:ENST00000536973.5:ENST00000538945.5:ENST00000543847.1:ENST00000540736.1:ENST00000540501.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	45	2	2.90162	3.873945	4.84627	0.0113157	0.00254319	0.0886121	0.0465056
chr17	42495446	42495525	6611673	0	+	0.405063	(0.378,0.408]	chr17	644145	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ATP6V0A1	ENSG00000033627.17	ENST00000393829.6:ENST00000343619.9:ENST00000537728.5:ENST00000264649.10:ENST00000585525.5:ENST00000544137.5	protein_coding	protein_coding	protein_coding	protein_coding	1	45	2	2.90162	3.873945	4.84627	0.0113157	0.00254319	0.0886121	0.0465056
chr22	19490454	19490553	7476941	0	+	0.535354	(0.515,0.57]	chr22	762407	61	INTRON	INTRON	CDC45	ENSG00000093009.11	ENST00000407835.6:ENST00000437685.6:ENST00000483431.5:ENST00000438587.6:ENST00000672837.1:ENST00000263201.7:ENST00000404724.7:ENST00000487669.5:ENST00000428937.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	64	2	2.4386	3.873905	5.30921	0.00326739	1.98811e-4	0.0508595	0.0122787
chr7	4987598	4987691	3271178	0	+	0.430108	(0.408,0.44]	chr7	304034	6	INTRON	INTRON	RNF216P1	ENSG00000196204.12	ENST00000406089.6:ENST00000477090.5:ENST00000404006.5:ENST00000403969.5:ENST00000494947.5:ENST00000406608.2:ENST00000405396.2:ENST00000464479.1:ENST00000466622.1	lncRNA	lncRNA	lncRNA	lncRNA	3	65	2	2.30838	3.8738900000000003	5.4394	0.00547703	6.50925e-4	0.0671198	0.0232863
chr16	89471264	89471363	6543409	0	-	0.515152	(0.476,0.515]	chr16	634281	396	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	65	2	2.29359	3.873745	5.4539	0.00584957	5.16081e-4	0.0689807	0.0208667
chr21	34122271	34122370	7401583	0	+	0.515152	(0.476,0.515]	chr21	753976	2	EXON_MRNA	EXON_MRNA:INTRON	MRPS6	ENSG00000243927.6	ENST00000488492.5:ENST00000477091.5:ENST00000399312.3:ENST00000483977.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	65	2	2.29359	3.873745	5.4539	0.00584957	5.16081e-4	0.0689807	0.0208667
chr21	10415211	10415311	7368146	0	+	0.36	(0.35,0.378]	chr21	751974	3	SS5_PROX	SS5_PROX:INTRON	BAGE2	ENSG00000187172.15	ENST00000474011.5:ENST00000470054.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	2	57	2	2.34278	3.873615	5.40445	0.0129593	0.00114224	0.0991015	0.0307966
chr20	49182832	49182932	7352326	0	-	0.33	(0.32,0.35]	chr20	749697	32	INTRON	INTRON	STAU1	ENSG00000124214.21	ENST00000371856.7:ENST00000371828.7:ENST00000340954.11:ENST00000347458.9:ENST00000360426.8:ENST00000371792.5:ENST00000371802.5:ENST00000437404.2	protein_coding	protein_coding	protein_coding	protein_coding	2	60	2	2.67068	3.873485	5.07629	0.00468114	0.00406276	0.0600108	0.0578984
chr1	111125650	111125750	522332	0	-	0.24	[0,0.28]	chr1	61402	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DRAM2	ENSG00000156171.15	ENST00000484310.6:ENST00000539140.6:ENST00000286692.8:ENST00000461449.5:ENST00000496430.6:ENST00000480600.6:ENST00000490780.5:ENST00000463682.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	55	2	2.54624	3.873475	5.20071	0.0388449	0.00261806	0.143072	0.0470772
chr18	192142	192241	6855166	0	+	0.242424	[0,0.28]	chr18	679521	115	INTRON	INTRON	USP14	ENSG00000101557.15	ENST00000582707.5:ENST00000400266.7:ENST00000261601.8:ENST00000578942.5:ENST00000383589.6:ENST00000583119.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	55	2	2.54624	3.873475	5.20071	0.0388449	0.00261806	0.143072	0.0470772
chrX	14864059	14864159	7766403	0	-	0.44	(0.408,0.44]	chrX	793709	1	SS5_PROX	SS5_PROX:INTRON	FANCB	ENSG00000181544.16	ENST00000696351.1:ENST00000696352.1:ENST00000696353.1:ENST00000696354.1:ENST00000696322.1:ENST00000452869.2:ENST00000696311.1:ENST00000643728.2:ENST00000696355.1:ENST00000696312.1:ENST00000696356.1:ENST00000650831.1:ENST00000646255.1:ENST00000324138.7:ENST00000696357.1:ENST00000696323.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	41	2	3.14706	3.873425	4.59979	0.0109537	0.00382411	0.0873034	0.0562562
chr17	70093076	70093176	6828379	0	-	0.35	(0.32,0.35]	chr17	675009	199	INTRON	INTRON	ENSG00000230258	ENSG00000230258.6	ENST00000435112.5	lncRNA	lncRNA	lncRNA	lncRNA	2	61	2	2.78706	3.873385	4.95971	0.00663522	0.00253645	0.0703181	0.0465056
chr20	49938434	49938532	7285660	0	+	0.397959	(0.378,0.408]	chr20	741177	15	INTRON	INTRON	RNF114	ENSG00000124226.11	ENST00000623528.3:ENST00000622999.3:ENST00000244061.6:ENST00000625177.3:ENST00000623732.3:ENST00000624620.1:ENST00000622920.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	46	2	3.05502	3.873355	4.69169	0.00689519	0.00432302	0.0717484	0.0599409
chr11	75335514	75335614	4989996	0	-	0.51	(0.476,0.515]	chr11	471494	235	INTRON	INTRON	ARRB1	ENSG00000137486.17	ENST00000420843.7:ENST00000360025.7:ENST00000533255.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	66	2	1.96833	3.87333	5.77833	0.0195007	1.24749e-4	0.119967	0.010049
chrX	53398102	53398201	7819932	0	-	0.393939	(0.378,0.408]	chrX	797703	11	INTRON	INTRON	SMC1A	ENSG00000072501.19	ENST00000375340.10:ENST00000322213.9:ENST00000675504.1:ENST00000674590.1	protein_coding	protein_coding	protein_coding	protein_coding	2	95	2	3.68517	3.8732499999999996	4.06133	3.90172e-4	1.0488e-4	0.0177751	0.00920724
chr2	15436470	15436569	1071899	0	-	0.232323	[0,0.28]	chr2	114368	83	INTRON	INTRON	NBAS	ENSG00000151779.13	ENST00000281513.10	protein_coding	protein_coding	protein_coding	protein_coding	2	68	2	2.48813	3.87314	5.25815	0.00953591	0.0066548	0.0863913	0.0703807
chr18	62750526	62750626	6922915	0	+	0.34	(0.32,0.35]	chr18	685172	329	INTRON	INTRON	PHLPP1	ENSG00000081913.14	ENST00000262719.10	protein_coding	protein_coding	protein_coding	protein_coding	1	53	2	3.27858	3.87308	4.46758	0.0119306	0.00368368	0.0962115	0.0535094
chr1	45685620	45685720	440579	0	-	0.35	(0.32,0.35]	chr1	53365	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	GPBP1L1	ENSG00000159592.11	ENST00000290795.7:ENST00000355105.8:ENST00000488278.5:ENST00000480941.1:ENST00000480083.5:ENST00000493083.5:ENST00000460859.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	60	2	2.19668	3.8730599999999997	5.54944	0.021398	9.42646e-4	0.123719	0.0280811
chr22	20575232	20575332	7480051	0	+	0.61	(0.57,1]	chr22	763025	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	MED15	ENSG00000099917.17	ENST00000433831.5:ENST00000292733.11:ENST00000263205.11:ENST00000406969.5:ENST00000382974.6:ENST00000492381.5:ENST00000478831.5:ENST00000489651.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	50	2	3.82801	3.87297	3.91793	9.41714e-5	5.86096e-5	0.00813008	0.00668534
chr5	104306373	104306473	2443479	0	+	0.4	(0.378,0.408]	chr5	234410	2011	INTRON	INTRON	LINC02163	ENSG00000251026.2	ENST00000662211.1:ENST00000666145.1	lncRNA	lncRNA	lncRNA	lncRNA	4	85	2	2.1245	3.8728999999999996	5.6213	0.00724232	9.58854e-5	0.0729826	0.00822887
chr11	14558211	14558311	4918890	0	-	0.43	(0.408,0.44]	chr11	461028	379	INTRON	INTRON	PSMA1	ENSG00000129084.18	ENST00000418988.2	protein_coding	protein_coding	protein_coding	protein_coding	1	41	2	2.66579	3.8728100000000003	5.07983	0.019342	0.00247652	0.119831	0.0446195
chr17	65052701	65052801	6818381	0	-	0.43	(0.408,0.44]	chr17	674129	340	INTRON	INTRON	GNA13	ENSG00000120063.10	ENST00000439174.7:ENST00000541118.1	protein_coding	protein_coding	protein_coding	protein_coding	1	41	2	2.66579	3.8728100000000003	5.07983	0.019342	0.00247652	0.119831	0.0446195
chr15	72493093	72493193	6059348	0	+	0.41	(0.408,0.44]	chr15	576852	177	INTRON	INTRON	ARIH1	ENSG00000166233.15	ENST00000379887.9:ENST00000570085.5:ENST00000564062.1:ENST00000567762.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	43	2	3.41323	3.8728049999999996	4.33238	0.0218901	0.00129989	0.11491	0.0333764
chr4	2351351	2351450	2099056	0	-	0.353535	(0.35,0.378]	chr4	207724	80	INTRON	INTRON	ZFYVE28	ENSG00000159733.14	ENST00000290974.7:ENST00000511071.5:ENST00000515312.5:ENST00000515169.5:ENST00000509171.5:ENST00000503000.1:ENST00000508184.5:ENST00000504743.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	46	2	2.78212	3.87271	4.9633	0.0168532	0.00198929	0.103549	0.0411469
chr6	147225655	147225755	2988920	0	+	0.45	(0.44,0.476]	chr6	280001	192	INTRON	INTRON	STXBP5	ENSG00000164506.15	ENST00000321680.11:ENST00000367481.7:ENST00000546097.5:ENST00000367480.7	protein_coding	protein_coding	protein_coding	protein_coding	1	47	2	3.31011	3.87268	4.43525	0.00897296	0.00259023	0.0849778	0.0452934
chr16	328167	328267	6426611	0	-	0.47	(0.44,0.476]	chr16	617500	131	INTRON	INTRON	AXIN1	ENSG00000103126.15	ENST00000262320.8:ENST00000461023.5:ENST00000354866.7:ENST00000481769.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	42	2	3.3111	3.8724350000000003	4.43377	0.0162803	0.0020006	0.101453	0.0412555
chr16	27542529	27542628	6467209	0	-	0.464646	(0.44,0.476]	chr16	624420	38	INTRON	INTRON	GTF3C1	ENSG00000077235.18	ENST00000356183.9:ENST00000561623.5	protein_coding	protein_coding	protein_coding	protein_coding	1	42	2	3.3111	3.8724350000000003	4.43377	0.0162803	0.0020006	0.101453	0.0412555
chr5	111499687	111499786	2702666	0	-	0.252525	[0,0.28]	chr5	254388	38	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	STARD4	ENSG00000164211.13	ENST00000296632.8:ENST00000512160.5:ENST00000511137.5:ENST00000502931.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	260	2	3.08317	3.87235	4.66153	4.70202e-5	1.96342e-5	0.00559481	0.00359093
chr16	21517128	21517228	6461528	0	-	0.32	(0.28,0.32]	chr16	623383	106	INTRON	INTRON	SMG1P3	ENSG00000180747.15	ENST00000522841.6:ENST00000437413.2:ENST00000435197.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	7	116	2	1.90231	3.872345	5.84238	0.00555076	5.0114e-4	0.0675005	0.0206993
chr1	171510350	171510448	253463	0	+	0.285714	(0.28,0.32]	chr1	30097	9	EXON_MRNA	EXON_MRNA:INTRON	PRRC2C	ENSG00000117523.18	ENST00000647382.2:ENST00000367742.7:ENST00000476522.5:ENST00000338920.8:ENST00000467601.1:ENST00000463586.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	111	2	3.68544	3.87224	4.05904	9.30275e-4	9.15765e-5	0.0279637	0.00800742
chr1	89824469	89824569	159557	0	+	0.38	(0.378,0.408]	chr1	17270	19	INTRON	INTRON	LRRC8D	ENSG00000171492.14	ENST00000525774.5:ENST00000337338.9:ENST00000394593.7	protein_coding	protein_coding	protein_coding	protein_coding	2	55	2	2.51464	3.87194	5.22924	0.00684341	0.00172721	0.0748032	0.0374701
chr22	38718976	38719075	7514441	0	+	0.333333	(0.32,0.35]	chr22	767619	16	INTRON	INTRON	GTPBP1	ENSG00000100226.16	ENST00000216044.10:ENST00000418601.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	48	2	2.51061	3.87194	5.23327	0.0364463	9.33826e-4	0.138959	0.0278746
chr9	131484025	131484105	4217895	0	+	0.3875	(0.378,0.408]	chr9	386842	2	INTRON	INTRON	PRRC2B	ENSG00000288701.1	ENST00000684596.1:ENST00000683519.1:ENST00000682501.1:ENST00000683353.1:ENST00000682662.1	protein_coding	protein_coding	protein_coding	protein_coding	2	55	2	2.46345	3.87189	5.28033	0.00827342	0.00143651	0.0813266	0.0340925
chr5	150446085	150446185	2751207	0	-	0.39	(0.378,0.408]	chr5	259125	4	SS3_PROX	SS3_PROX:INTRON	RPS14	ENSG00000164587.13	ENST00000407193.7:ENST00000401695.8:ENST00000521466.5:ENST00000519690.1:ENST00000312037.6:ENST00000518139.5:ENST00000642507.1:ENST00000519855.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	62	2	2.63057	3.87186	5.11315	0.0053733	9.26795e-4	0.0642754	0.0278442
chr3	51667083	51667182	1427361	0	+	0.424242	(0.408,0.44]	chr3	150583	38	UTR3	UTR3:EXON_MRNA:INTRON	RAD54L2:TEX264	ENSG00000164080.14:ENSG00000164081.13	ENST00000684192.1:ENST00000409535.6:ENST00000419358.5	protein_coding	protein_coding	protein_coding	protein_coding	3	67	2	1.8749	3.871845	5.86879	0.0264246	1.0135e-4	0.133676	0.00906611
chrX	154767961	154768046	7739339	0	+	0.529412	(0.515,0.57]	chrX	792407	2	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	DKC1	ENSG00000130826.19	ENST00000620277.4:ENST00000413910.6:ENST00000426673.6:ENST00000696575.1:ENST00000369550.10:ENST00000696579.1:ENST00000696578.1:ENST00000696577.1:ENST00000696576.1:ENST00000696580.1:ENST00000696581.1:ENST00000696582.1:ENST00000696583.1:ENST00000696627.1:ENST00000696628.1:ENST00000696584.1:ENST00000696585.1:ENST00000696586.1:ENST00000696587.1:ENST00000696588.1:ENST00000437719.5:ENST00000412124.5:ENST00000484317.6:ENST00000696589.1:ENST00000696590.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	40	2	3.1473	3.8718000000000004	4.5963	0.00397184	0.00370287	0.0561162	0.0549214
chr1	234373186	234373281	660517	0	-	0.505263	(0.476,0.515]	chr1	78087	5	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	COA6-AS1	ENSG00000231663.2	ENST00000451795.2:ENST00000692579.1:ENST00000685022.1:ENST00000687489.1:ENST00000689078.1:ENST00000690152.1:ENST00000687118.1:ENST00000690942.1:ENST00000684945.1:ENST00000688723.1	lncRNA	lncRNA	lncRNA	lncRNA	6	90	2	1.76217	3.871725	5.98128	0.0111778	4.70386e-5	0.0937192	0.00593131
chr15	64588435	64588535	6045368	0	+	0.33	(0.32,0.35]	chr15	575696	855	INTRON	INTRON	ZNF609	ENSG00000180357.10	ENST00000326648.5:ENST00000558680.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	44	2	2.84569	3.8716850000000003	4.89768	0.0121137	0.00793135	0.0962599	0.076155
chr7	8064617	8064716	3279956	0	+	0.323232	(0.32,0.35]	chr7	304783	40	INTRON	INTRON	GLCCI1	ENSG00000106415.13	ENST00000223145.10:ENST00000430798.1:ENST00000414914.5:ENST00000474269.5:ENST00000489405.5:ENST00000438949.1:ENST00000496617.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	44	2	2.84569	3.8716850000000003	4.89768	0.0121137	0.00793135	0.0962599	0.076155
chr7	152662460	152662558	3681483	0	-	0.336735	(0.32,0.35]	chr7	341683	13	INTRON	INTRON	XRCC2	ENSG00000196584.3	ENST00000359321.2:ENST00000495707.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	44	2	2.84569	3.8716850000000003	4.89768	0.0121137	0.00793135	0.0962599	0.076155
chr1	246877502	246877602	681395	0	-	0.28	[0,0.28]	chr1	79928	2	SS3_PROX	SS3_PROX:INTRON	AHCTF1	ENSG00000153207.16	ENST00000648844.2:ENST00000326225.3:ENST00000366508.5:ENST00000470300.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	55	2	2.59548	3.871625	5.14777	0.0346067	0.00311898	0.136649	0.0512673
chr5	146231608	146231704	2514400	0	+	0.4375	(0.408,0.44]	chr5	240182	3	INTRON	INTRON	ENSG00000275740:RBM27	ENSG00000275740.1:ENSG00000091009.8	ENST00000506502.2:ENST00000265271.7	protein_coding	protein_coding	protein_coding	protein_coding	2	54	2	2.55103	3.871525	5.19202	0.00587353	0.0016671	0.0690758	0.0369207
chr7	12391426	12391524	3485316	0	-	0.428571	(0.408,0.44]	chr7	325964	17	INTRON	INTRON	VWDE	ENSG00000146530.15	ENST00000275358.8:ENST00000452576.6:ENST00000521169.5:ENST00000326715.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	43	2	2.3975	3.87149	5.34548	0.040266	9.40657e-4	0.161534	0.0280776
chr16	1689458	1689557	6275321	0	+	0.464646	(0.44,0.476]	chr16	599518	35	INTRON	INTRON	JPT2	ENSG00000206053.13	ENST00000569256.5:ENST00000567717.1:ENST00000562684.5:ENST00000248098.8:ENST00000561516.5:ENST00000382711.9:ENST00000566742.5:ENST00000569765.5:ENST00000566925.5:ENST00000382710.8:ENST00000566691.5:ENST00000565851.5:ENST00000568376.1:ENST00000562569.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	42	2	2.49112	3.871455	5.25179	0.0315968	0.00124521	0.144381	0.0322969
chr19	54205975	54206075	7098884	0	+	0.54	(0.515,0.57]	chr19	711941	3	SS3_PROX	SS3_PROX:INTRON	RPS9	ENSG00000170889.14	ENST00000484121.5:ENST00000448962.5:ENST00000302907.9:ENST00000626547.2:ENST00000436445.5:ENST00000391752.5:ENST00000402367.5:ENST00000445961.5:ENST00000391751.7:ENST00000495002.5:ENST00000391753.6:ENST00000441429.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	177	2	3.66434	3.87143	4.07852	1.71942e-5	1.85713e-7	0.00315585	2.14243e-4
chr7	5225126	5225224	3272322	0	+	0.44898	(0.44,0.476]	chr7	304133	21	INTRON	INTRON	WIPI2	ENSG00000157954.15	ENST00000401525.7:ENST00000288828.9:ENST00000404704.7:ENST00000466014.5:ENST00000382384.6:ENST00000484262.1:ENST00000480238.5:ENST00000488359.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	89	2	3.61718	3.8713999999999995	4.12562	7.37432e-4	3.66727e-5	0.02495	0.00484751
chr4	88756770	88756869	2199941	0	-	0.262626	[0,0.28]	chr4	215911	58	INTRON	INTRON	FAM13A	ENSG00000138640.15	ENST00000395002.6:ENST00000264344.10:ENST00000511573.5:ENST00000503556.5:ENST00000511976.5:ENST00000508369.5:ENST00000513837.5:ENST00000504836.5:ENST00000507352.1:ENST00000515155.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	50	2	2.63238	3.8713550000000003	5.11033	0.0259691	0.00991388	0.133676	0.0838372
chr1	155899394	155899493	564493	0	-	0.454545	(0.44,0.476]	chr1	67401	17	UTR3	UTR3:EXON_MRNA	RIT1	ENSG00000143622.11	ENST00000368323.8:ENST00000651853.1	protein_coding	protein_coding	protein_coding	protein_coding	2	54	2	2.59888	3.8713299999999995	5.14378	0.00487719	0.00184943	0.0640618	0.0388609
chr15	68101878	68101978	6056432	0	+	0.45	(0.44,0.476]	chr15	576567	136	INTRON	INTRON	PIAS1	ENSG00000033800.14	ENST00000564915.5:ENST00000249636.11:ENST00000562190.1:ENST00000545237.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	54	2	2.59888	3.8713299999999995	5.14378	0.00487719	0.00184943	0.0640618	0.0388609
chr2	222876429	222876529	1021364	0	+	0.45	(0.44,0.476]	chr2	109244	105	INTRON	INTRON	ACSL3	ENSG00000123983.15	ENST00000392066.7:ENST00000407441.5:ENST00000680251.1:ENST00000679541.1:ENST00000681906.1:ENST00000679545.1:ENST00000679932.1:ENST00000680100.1:ENST00000680475.1:ENST00000680525.1:ENST00000680420.1:ENST00000681326.1:ENST00000681292.1:ENST00000681017.1:ENST00000680382.1:ENST00000535678.2:ENST00000680395.1:ENST00000680736.1:ENST00000679546.1:ENST00000680147.1:ENST00000357430.8:ENST00000681009.1:ENST00000679514.1:ENST00000681697.1:ENST00000680921.1:ENST00000681383.1:ENST00000413316.1:ENST00000679558.1:ENST00000680684.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	54	2	2.59888	3.8713299999999995	5.14378	0.00487719	0.00184943	0.0640618	0.0388609
chr20	50100080	50100180	7353829	0	-	0.42	(0.408,0.44]	chr20	749884	7	INTRON	INTRON	UBE2V1	ENSG00000244687.13	ENST00000340309.7:ENST00000371677.7:ENST00000415862.6:ENST00000557021.5:ENST00000617119.4:ENST00000625172.3:ENST00000396059.7:ENST00000371674.8:ENST00000371657.9:ENST00000483534.5:ENST00000492371.6:ENST00000486653.5:ENST00000490555.1:ENST00000493090.5:ENST00000467839.5:ENST00000472923.5:ENST00000432266.5:ENST00000470565.5:ENST00000490289.5:ENST00000462217.5:ENST00000461960.5:ENST00000473860.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	65	2	2.3494	3.8713	5.3932	0.00462504	7.81492e-4	0.062717	0.0257168
chr7	66635018	66635115	3324450	0	+	0.494845	(0.476,0.515]	chr7	309152	12	INTRON	INTRON	KCTD7	ENSG00000243335.10	ENST00000639828.2:ENST00000640385.1:ENST00000275532.8:ENST00000443322.1:ENST00000639879.1:ENST00000640851.1:ENST00000638524.1:ENST00000449064.6:ENST00000638540.1:ENST00000640234.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	65	2	2.3346	3.871145	5.40769	0.00494807	6.23078e-4	0.0646039	0.0229151
chr11	78415446	78415546	5000364	0	-	0.39	(0.378,0.408]	chr11	472472	510	INTRON	INTRON	GAB2	ENSG00000033327.13	ENST00000361507.5:ENST00000526030.1:ENST00000528886.5:ENST00000530915.1:ENST00000534823.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	43	2	3.33026	3.870975	4.41169	0.0199606	0.00189824	0.109608	0.0402736
chr18	13000211	13000311	6876657	0	+	0.39	(0.378,0.408]	chr18	681346	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	CEP192	ENSG00000101639.19	ENST00000325971.12:ENST00000506447.5:ENST00000589596.5:ENST00000507064.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	43	2	3.33026	3.870975	4.41169	0.0199606	0.00189824	0.109608	0.0402736
chr20	49131062	49131161	7351799	0	-	0.383838	(0.378,0.408]	chr20	749646	61	INTRON	INTRON	STAU1	ENSG00000124214.21	ENST00000371856.7:ENST00000371828.7:ENST00000340954.11:ENST00000347458.9:ENST00000360426.8:ENST00000371792.5:ENST00000371802.5:ENST00000437404.2	protein_coding	protein_coding	protein_coding	protein_coding	1	43	2	3.33026	3.870975	4.41169	0.0199606	0.00189824	0.109608	0.0402736
chr1	54228054	54228154	461954	0	-	0.54	(0.515,0.57]	chr1	55696	4	SS5_PROX	SS5_PROX:INTRON	SSBP3	ENSG00000157216.16	ENST00000610401.5:ENST00000357475.9:ENST00000371319.8:ENST00000417664.7:ENST00000533946.6:ENST00000326956.12:ENST00000528930.6:ENST00000371320.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	37	2	3.05839	3.870745	4.6831	0.00485936	0.00471288	0.0640618	0.0600108
chr20	32134599	32134696	7254558	0	+	0.340206	(0.32,0.35]	chr20	736845	11	INTRON	INTRON	TM9SF4	ENSG00000101337.16	ENST00000398022.7:ENST00000442842.5:ENST00000450829.5:ENST00000217315.9:ENST00000417389.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	49	2	2.30673	3.870665	5.4346	0.0584434	4.09682e-4	0.167723	0.0181306
chr10	21646485	21646585	4405545	0	+	0.31	(0.28,0.32]	chr10	406487	214	INTRON	INTRON	MLLT10	ENSG00000078403.17	ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000651298.1:ENST00000377059.7:ENST00000652258.1:ENST00000651382.1:ENST00000438473.6:ENST00000650921.1:ENST00000651405.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	47	2	3.07744	3.870515	4.66359	0.0193496	0.00604536	0.108861	0.0700813
chr15	58748225	58748323	6193501	0	-	0.316327	(0.28,0.32]	chr15	589989	10	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	ADAM10	ENSG00000137845.15	ENST00000260408.8:ENST00000402627.5:ENST00000561288.1:ENST00000559053.1:ENST00000558733.5:ENST00000439637.5:ENST00000497846.5:ENST00000558004.1:ENST00000560608.5:ENST00000561149.1:ENST00000461408.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	47	2	3.07744	3.870515	4.66359	0.0193496	0.00604536	0.108861	0.0700813
chr1	235255950	235256050	663137	0	-	0.55	(0.515,0.57]	chr1	78539	2	SS3_PROX	SS3_PROX:INTRON	ARID4B	ENSG00000054267.22	ENST00000349213.7:ENST00000366603.6:ENST00000264183.9:ENST00000421364.5:ENST00000491632.5:ENST00000418304.1:ENST00000466653.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	52	2	2.48902	3.870425	5.25183	0.00760558	2.6074e-4	0.0749571	0.014326
chr10	3086950	3087049	4381723	0	+	0.535354	(0.515,0.57]	chr10	404062	26	INTRON	INTRON	PFKP	ENSG00000067057.18	ENST00000607886.5:ENST00000381125.9:ENST00000381075.7:ENST00000678206.1:ENST00000678089.1:ENST00000676796.1:ENST00000421751.1:ENST00000407806.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	52	2	2.48902	3.870425	5.25183	0.00760558	2.6074e-4	0.0749571	0.014326
chr12	76050953	76051053	5369863	0	-	0.37	(0.35,0.378]	chr12	512260	3	SS3_PROX	SS3_PROX:INTRON	NAP1L1	ENSG00000187109.15	ENST00000618691.5:ENST00000552056.5:ENST00000393263.7:ENST00000431879.7:ENST00000552147.5:ENST00000547773.5:ENST00000544816.5:ENST00000542344.5:ENST00000535020.6:ENST00000549596.5:ENST00000547993.5:ENST00000547969.5:ENST00000552342.5:ENST00000547529.6:ENST00000548044.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	238	2	3.75485	3.87039	3.98593	9.28965e-6	4.98855e-7	0.00235612	3.78502e-4
chr16	85572946	85573046	6415561	0	+	0.53	(0.515,0.57]	chr16	615470	162	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	3	103	2	3.44592	3.87037	4.29482	8.97344e-5	9.59903e-6	0.00844245	0.00224473
chr11	73591125	73591225	4984856	0	-	0.33	(0.32,0.35]	chr11	470841	1223	INTRON	INTRON	FAM168A	ENSG00000054965.11	ENST00000064778.8:ENST00000356467.5:ENST00000450446.6:ENST00000632101.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	44	2	2.90786	3.8703649999999996	4.83287	0.00993008	0.0095071	0.0877296	0.0817766
chr14	73298877	73298976	5917701	0	-	0.333333	(0.32,0.35]	chr14	562222	17	UTR5	UTR5:EXON_MRNA:INTRON	NUMB	ENSG00000133961.21	ENST00000554546.5:ENST00000535282.5:ENST00000359560.7:ENST00000355058.7:ENST00000544991.7:ENST00000555238.6:ENST00000557597.5:ENST00000356296.8:ENST00000556772.5:ENST00000555394.5:ENST00000559312.5:ENST00000560335.5:ENST00000555738.6:ENST00000554521.6:ENST00000555859.5:ENST00000554394.5:ENST00000555307.5:ENST00000554315.5:ENST00000555987.5:ENST00000556112.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	44	2	2.90786	3.8703649999999996	4.83287	0.00993008	0.0095071	0.0877296	0.0817766
chr3	69051157	69051253	1734711	0	-	0.510417	(0.476,0.515]	chr3	176805	18	INTRON	INTRON	TMF1	ENSG00000144747.17	ENST00000398559.7:ENST00000646304.1:ENST00000646708.1:ENST00000488010.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	43	2	2.56033	3.87036	5.18039	0.0287634	6.58744e-4	0.127066	0.0232396
chr6	14996515	14996615	3062895	0	-	0.5	(0.476,0.515]	chr6	284643	188	INTRON	INTRON	ENSG00000234261	ENSG00000234261.5	ENST00000629853.2:ENST00000653525.1:ENST00000656468.1:ENST00000656344.1:ENST00000659197.1:ENST00000437648.1	lncRNA	lncRNA	lncRNA	lncRNA	1	43	2	2.56033	3.87036	5.18039	0.0287634	6.58744e-4	0.127066	0.0232396
chr12	116203766	116203866	5424809	0	-	0.46	(0.44,0.476]	chr12	518271	226	INTRON	INTRON	MED13L	ENSG00000123066.9	ENST00000281928.9:ENST00000650226.1:ENST00000548743.2:ENST00000647567.1:ENST00000551197.2	protein_coding	protein_coding	protein_coding	protein_coding	3	119	2	3.34537	3.87027	4.39517	2.18713e-4	7.31137e-6	0.0135522	0.00191996
chr6	154783002	154783101	3002315	0	+	0.30303	(0.28,0.32]	chr6	280749	46	INTRON	INTRON	SCAF8	ENSG00000213079.10	ENST00000367186.7:ENST00000417268.3:ENST00000461219.5:ENST00000367178.8:ENST00000464628.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	75	2	2.06884	3.870205	5.67157	0.0152581	9.48957e-4	0.108569	0.0281755
chr10	63408053	63408153	4634812	0	-	0.4	(0.378,0.408]	chr10	426236	272	INTRON	INTRON	JMJD1C	ENSG00000171988.20	ENST00000399262.7:ENST00000633035.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	66	2	2.22859	3.870165	5.51174	0.00763308	5.93655e-4	0.0777238	0.0225024
chr5	179839258	179839357	2780065	0	-	0.484848	(0.476,0.515]	chr5	262418	15	UTR3	UTR3:EXON_MRNA:INTRON	MRNIP	ENSG00000161010.16	ENST00000522663.5:ENST00000518235.5:ENST00000520698.5:ENST00000376931.6:ENST00000523267.1:ENST00000523084.5:ENST00000292586.11:ENST00000518219.5:ENST00000521299.5:ENST00000521333.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	43	2	2.8863	3.870045	4.85379	0.0111679	0.00234214	0.0877435	0.0442989
chr17	780117	780217	6699008	0	-	0.38	(0.378,0.408]	chr17	655493	1	SS5_PROX	SS5_PROX:INTRON	GLOD4	ENSG00000167699.14	ENST00000301329.11:ENST00000301328.9:ENST00000576239.5:ENST00000574554.5:ENST00000575851.5:ENST00000576419.1:ENST00000575790.5:ENST00000574581.5:ENST00000572220.1:ENST00000576670.1:ENST00000574354.5:ENST00000576750.1:ENST00000628529.2:ENST00000625892.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	55	2	2.41037	3.870025	5.32968	0.0100185	0.00119786	0.0880217	0.0315806
chr12	113821953	113822053	5420819	0	-	0.43	(0.408,0.44]	chr12	517982	34	INTRON	INTRON	RBM19	ENSG00000122965.11	ENST00000545145.6	protein_coding	protein_coding	protein_coding	protein_coding	2	55	2	2.21238	3.86998	5.52758	0.0193525	4.54953e-4	0.119831	0.0196892
chr1	154268157	154268256	228034	0	+	0.525253	(0.515,0.57]	chr1	26368	12	INTRON	INTRON	UBAP2L	ENSG00000143569.19	ENST00000271877.11:ENST00000428931.6:ENST00000361546.6:ENST00000433615.5:ENST00000428595.1:ENST00000493867.1:ENST00000484819.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	59	2	2.17039	3.8697299999999997	5.56907	0.00900252	1.36543e-4	0.0851009	0.0106702
chr15	101293793	101293893	6270036	0	-	0.36	(0.35,0.378]	chr15	598033	4	SS3_PROX	SS3_PROX:INTRON	SNRPA1	ENSG00000131876.18	ENST00000254193.11:ENST00000558036.5:ENST00000559309.5:ENST00000394082.8:ENST00000540017.6:ENST00000560496.5:ENST00000560383.5:ENST00000558059.5:ENST00000560987.5:ENST00000560856.5:ENST00000558020.1:ENST00000561187.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	78	2	1.9392	3.8693350000000004	5.79947	0.0126486	2.36402e-4	0.0982897	0.0140941
chr17	49707444	49707539	6793584	0	-	0.442105	(0.44,0.476]	chr17	670358	1	EXON_MRNA	EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SLC35B1	ENSG00000121073.15	ENST00000649906.1:ENST00000240333.12:ENST00000504260.5:ENST00000502406.5:ENST00000507773.6:ENST00000503334.5:ENST00000508520.5:ENST00000435059.6:ENST00000514907.5:ENST00000515850.6:ENST00000511763.6:ENST00000511657.1:ENST00000509781.5:ENST00000508607.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	43	2	2.67572	3.8693	5.06288	0.0212064	0.00102416	0.113017	0.0294041
chr10	14901462	14901562	4397313	0	+	0.24	[0,0.28]	chr10	405980	2	SS5_PROX	SS5_PROX:INTRON	SUV39H2	ENSG00000152455.16	ENST00000378331.5:ENST00000433779.5:ENST00000378325.7:ENST00000354919.11:ENST00000313519.9:ENST00000358298.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	85	2	1.62313	3.869255	6.11538	0.0605286	4.03843e-4	0.191883	0.0185763
chr11	34081147	34081245	4767952	0	+	0.27551	[0,0.28]	chr11	440984	10	INTRON	INTRON	CAPRIN1	ENSG00000135387.21	ENST00000341394.9:ENST00000528856.5:ENST00000389645.7:ENST00000532820.5:ENST00000530820.5:ENST00000529307.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	114	2	1.73044	3.869255	6.00807	0.0161924	6.0063e-4	0.109464	0.0226059
chr10	45530609	45530709	4606520	0	-	0.47	(0.44,0.476]	chr10	424345	408	INTRON	INTRON	MARCHF8	ENSG00000165406.16	ENST00000453424.7:ENST00000319836.7:ENST00000395769.6:ENST00000602712.2:ENST00000453980.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	43	2	2.74063	3.869225	4.99782	0.0176095	0.0013223	0.105143	0.0333932
chr15	82735920	82736019	6248633	0	-	0.454545	(0.44,0.476]	chr15	596313	46	INTRON	INTRON	ACTG1P17	ENSG00000259315.1	ENST00000560958.1:ENST00000561222.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	1	43	2	2.74063	3.869225	4.99782	0.0176095	0.0013223	0.105143	0.0333932
chr5	65524204	65524303	2633893	0	-	0.474747	(0.44,0.476]	chr5	250145	23	INTRON	INTRON	CENPK	ENSG00000123219.13	ENST00000514814.5:ENST00000396679.6:ENST00000242872.7:ENST00000508421.5:ENST00000510693.5:ENST00000506282.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	43	2	2.74063	3.869225	4.99782	0.0176095	0.0013223	0.105143	0.0333932
chr16	89345216	89345315	6542129	0	-	0.535354	(0.515,0.57]	chr16	634215	15	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000647238.1:ENST00000644045.1:ENST00000643147.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	50	2	2.26012	3.8690550000000004	5.47799	0.0160033	2.09356e-4	0.109464	0.0131276
chr4	108168361	108168460	2224200	0	-	0.414141	(0.408,0.44]	chr4	217763	7	UTR5	UTR5:EXON_MRNA	LEF1	ENSG00000138795.10	ENST00000379951.6:ENST00000265165.6	protein_coding	protein_coding	protein_coding	protein_coding	2	90	2	3.52471	3.869045	4.21338	0.00112428	2.19708e-5	0.0306963	0.00364987
chr17	46169330	46169430	6784633	0	-	0.25	[0,0.28]	chr17	669233	4	SS5_PROX	SS5_PROX:INTRON	KANSL1	ENSG00000120071.15	ENST00000574590.6:ENST00000572904.6:ENST00000432791.7:ENST00000575318.6:ENST00000638275.1:ENST00000262419.10:ENST00000648792.1:ENST00000639531.1:ENST00000639150.1:ENST00000639853.1:ENST00000571698.2:ENST00000639375.1:ENST00000638269.1:ENST00000576248.2:ENST00000639356.1:ENST00000574655.6:ENST00000639099.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	169	2	3.61706	3.8690249999999997	4.12099	2.2411e-4	7.59741e-5	0.0137452	0.00731806
chr1	12318437	12318537	29143	0	+	0.54	(0.515,0.57]	chr1	3545	1	SS5_PROX	SS5_PROX:INTRON	VPS13D	ENSG00000048707.15	ENST00000620676.6:ENST00000613099.4:ENST00000011700.10:ENST00000646917.1:ENST00000460333.5:ENST00000487188.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	39	2	2.96814	3.86899	4.76984	0.00756432	0.00198034	0.0749063	0.0411469
chr18	12714944	12715043	6876029	0	+	0.545455	(0.515,0.57]	chr18	681236	18	INTRON	INTRON	PSMG2	ENSG00000128789.21	ENST00000585331.6:ENST00000586445.5:ENST00000590217.5:ENST00000586587.1:ENST00000317615.11	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	39	2	2.96814	3.86899	4.76984	0.00756432	0.00198034	0.0749063	0.0411469
chr3	154279188	154279287	1843061	0	-	0.363636	(0.35,0.378]	chr3	185358	8	EXON_MRNA	EXON_MRNA:INTRON	DHX36	ENSG00000174953.14	ENST00000496811.6:ENST00000308361.10:ENST00000329463.9:ENST00000479934.5:ENST00000481941.5:ENST00000460695.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	97	2	3.8412	3.868865	3.89653	2.61932e-4	1.97447e-4	0.0149313	0.0122531
chrX	49238947	49239046	7659528	0	+	0.525253	(0.515,0.57]	chrX	784104	13	INTRON	INTRON	CCDC22	ENSG00000101997.13	ENST00000376227.4:ENST00000496651.5:ENST00000490300.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	77	2	3.7749	3.8688599999999997	3.96282	2.59829e-4	7.05073e-5	0.0148796	0.00694412
chr22	22320850	22320950	7483063	0	+	0.47	(0.44,0.476]	chr22	763476	1	SS3_PROX	SS3_PROX:INTRON	ENSG00000286129	ENSG00000286129.1	ENST00000652112.1	lncRNA	lncRNA	lncRNA	lncRNA	4	76	2	1.70242	3.868855	6.03529	0.0282713	4.06961e-5	0.137721	0.00539487
chr3	64016749	64016848	1724016	0	-	0.434343	(0.408,0.44]	chr3	176303	33	EXON_MRNA	EXON_MRNA:INTRON	PSMD6	ENSG00000163636.11	ENST00000394431.6:ENST00000295901.9:ENST00000480205.5:ENST00000467853.5:ENST00000492933.5:ENST00000476464.5:ENST00000482510.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	74	2	2.04842	3.86884	5.68926	0.00797555	2.2853e-4	0.0798772	0.0138641
chrX	18285000	18285100	7770353	0	-	0.44	(0.408,0.44]	chrX	794172	188	INTRON	INTRON	SCML2	ENSG00000102098.19	ENST00000251900.9:ENST00000665583.1	protein_coding	protein_coding	protein_coding	protein_coding	4	74	2	2.04842	3.86884	5.68926	0.00797555	2.2853e-4	0.0798772	0.0138641
chr3	15848883	15848983	1624336	0	-	0.31	(0.28,0.32]	chr3	168034	342	INTRON	INTRON	ANKRD28	ENSG00000206560.12	ENST00000399451.6:ENST00000412318.5:ENST00000439830.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	267	2	2.83399	3.868835	4.90368	4.33695e-5	2.82237e-6	0.00532052	0.00119159
chr6	3075086	3075184	2788177	0	+	0.428571	(0.408,0.44]	chr6	263298	9	INTRON	INTRON	RIPK1	ENSG00000137275.16	ENST00000678809.1:ENST00000678874.1:ENST00000380409.3:ENST00000677799.1:ENST00000677261.1:ENST00000676758.1:ENST00000676995.1:ENST00000679118.1:ENST00000479389.1:ENST00000676591.1:ENST00000259808.9:ENST00000676618.1:ENST00000678084.1:ENST00000677361.1:ENST00000676965.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	44	2	2.43988	3.868835	5.29779	0.0398236	3.80479e-4	0.143072	0.0176313
chr17	59957790	59957882	6803172	0	-	0.423913	(0.408,0.44]	chr17	671995	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RNFT1	ENSG00000189050.16	ENST00000305783.13:ENST00000482446.5:ENST00000466544.5:ENST00000486103.6:ENST00000484257.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	54	2	2.60048	3.86875	5.13702	0.00484324	0.00202889	0.0640618	0.04086
chr11	67607805	67607895	4815481	0	+	0.411111	(0.408,0.44]	chr11	448562	2	SS5_PROX	SS5_PROX:INTRON	NDUFV1	ENSG00000167792.13	ENST00000647561.1:ENST00000532303.5:ENST00000532244.5:ENST00000528328.1:ENST00000322776.11:ENST00000529927.5:ENST00000415352.6:ENST00000532343.5:ENST00000524838.5:ENST00000524876.5:ENST00000528548.5:ENST00000529867.5:ENST00000533075.5:ENST00000534139.5:ENST00000525086.5:ENST00000530014.5:ENST00000530103.5:ENST00000532260.1:ENST00000530638.1:ENST00000526138.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	60	2	2.6117	3.86869	5.12568	0.00555224	7.90919e-4	0.0648867	0.0258324
chr22	21929849	21929949	7561495	0	-	0.41	(0.408,0.44]	chr22	773408	38	INTRON	INTRON	PPM1F	ENSG00000100034.14	ENST00000263212.10:ENST00000407142.5:ENST00000397495.8:ENST00000484588.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	60	2	2.6117	3.86869	5.12568	0.00555224	7.90919e-4	0.0648867	0.0258324
chr1	1110548	1110648	358757	0	-	0.59	(0.57,1]	chr1	41375	33	INTRON	INTRON	C1orf159	ENSG00000131591.18	ENST00000379339.5:ENST00000379325.7:ENST00000421241.7:ENST00000467751.5:ENST00000477196.5:ENST00000434641.5:ENST00000482816.5:ENST00000462097.5:ENST00000475119.5:ENST00000472741.5:ENST00000480643.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	44	2	2.60916	3.868645	5.12813	0.00119055	8.62401e-5	0.0315806	0.00783027
chr15	65762429	65762527	6209494	0	-	0.5	(0.476,0.515]	chr15	592611	6	INTRON	INTRON	DENND4A	ENSG00000174485.16	ENST00000443035.8:ENST00000431932.6:ENST00000564674.5:ENST00000568515.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	54	2	2.37731	3.8686300000000005	5.35995	0.0111793	7.54256e-4	0.0937192	0.0251179
chr1	243072798	243072898	667082	0	-	0.43	(0.408,0.44]	chr1	79146	27	INTRON	INTRON	LINC01347	ENSG00000214837.8	ENST00000627498.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	2	54	2	2.39162	3.86855	5.34548	0.0105837	9.40657e-4	0.0911864	0.0280776
chr10	17233086	17233155	4398611	0	+	0.492754	(0.476,0.515]	chr10	406075	1	SS3_PROX	SS3_PROX:INTRON	VIM	ENSG00000026025.16	ENST00000544301.7:ENST00000224237.9:ENST00000487938.5:ENST00000469543.5:ENST00000421459.2:ENST00000637053.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	58	2	2.49941	3.86855	5.23769	0.00811651	5.17244e-4	0.0766625	0.0203753
chr12	120461355	120461455	5235432	0	+	0.41	(0.408,0.44]	chr12	496800	15	UTR3	UTR3:EXON_MRNA	GATC	ENSG00000257218.6	ENST00000551765.6	protein_coding	protein_coding	protein_coding	protein_coding	2	54	2	2.39162	3.86855	5.34548	0.0105837	9.40657e-4	0.0911864	0.0280776
chr5	104142397	104142497	2441839	0	+	0.44	(0.408,0.44]	chr5	234410	371	INTRON	INTRON	LINC02163	ENSG00000251026.2	ENST00000662211.1:ENST00000666145.1	lncRNA	lncRNA	lncRNA	lncRNA	2	54	2	2.39162	3.86855	5.34548	0.0105837	9.40657e-4	0.0911864	0.0280776
chr3	15784648	15784748	1623688	0	-	0.31	(0.28,0.32]	chr3	168013	26	INTRON	INTRON	ANKRD28	ENSG00000206560.12	ENST00000399451.6:ENST00000624145.3:ENST00000683139.1:ENST00000412318.5:ENST00000497037.5:ENST00000451422.1:ENST00000498524.5:ENST00000439830.5:ENST00000461696.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	75	2	2.21798	3.86833	5.51868	0.00901091	0.00162747	0.0851009	0.0367966
chr1	1566212	1566311	360236	0	-	0.434343	(0.408,0.44]	chr1	41853	9	INTRON	INTRON	SSU72	ENSG00000160075.12	ENST00000291386.4:ENST00000378725.3:ENST00000359060.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	74	2	2.00961	3.8682999999999996	5.72699	0.00931007	1.93446e-4	0.0855292	0.0127226
chr13	102804457	102804557	5532920	0	+	0.5	(0.476,0.515]	chr13	528830	23	INTRON	INTRON	BIVM	ENSG00000134897.14	ENST00000257336.6:ENST00000651008.1:ENST00000651949.1:ENST00000652006.1:ENST00000651855.1:ENST00000651048.1:ENST00000448849.3:ENST00000652766.1:ENST00000652643.1:ENST00000651228.1:ENST00000651808.1:ENST00000491929.1:ENST00000474443.2:ENST00000652084.1:ENST00000481069.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	44	2	2.28264	3.86827	5.4539	0.0534132	5.16081e-4	0.179876	0.0208667
chr5	138353586	138353686	2494860	0	+	0.5	(0.476,0.515]	chr5	238471	2	INTRON	INTRON	KDM3B	ENSG00000120733.14	ENST00000314358.10	protein_coding	protein_coding	protein_coding	protein_coding	1	44	2	2.28264	3.86827	5.4539	0.0534132	5.16081e-4	0.179876	0.0208667
chr15	57279749	57279849	6035755	0	+	0.38	(0.378,0.408]	chr15	574805	61	INTRON	INTRON	TCF12	ENSG00000140262.18	ENST00000438423.6:ENST00000267811.9:ENST00000333725.10:ENST00000560190.5:ENST00000559609.5:ENST00000557843.5:ENST00000543579.5:ENST00000537840.5:ENST00000343827.7:ENST00000559710.5:ENST00000559703.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	41	2	2.92665	3.8681650000000003	4.80968	0.0086017	0.00679828	0.083729	0.0711802
chr17	19296587	19296687	6571341	0	+	0.39	(0.378,0.408]	chr17	638985	104	INTRON	INTRON	EPN2	ENSG00000072134.16	ENST00000314728.10:ENST00000347697.6:ENST00000395618.7:ENST00000580579.5:ENST00000395628.6:ENST00000575595.5:ENST00000494192.6:ENST00000395620.6:ENST00000495155.5:ENST00000395626.5:ENST00000571254.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	41	2	2.92665	3.8681650000000003	4.80968	0.0086017	0.00679828	0.083729	0.0711802
chr17	30737982	30738081	6589866	0	+	0.393939	(0.378,0.408]	chr17	640852	25	INTRON	INTRON	SUZ12P1	ENSG00000264538.7	ENST00000578070.5:ENST00000579526.5:ENST00000690405.1:ENST00000497969.6:ENST00000578195.6:ENST00000582557.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	1	41	2	2.92665	3.8681650000000003	4.80968	0.0086017	0.00679828	0.083729	0.0711802
chr4	94481545	94481645	1998679	0	+	0.4	(0.378,0.408]	chr4	199549	245	INTRON	INTRON	PDLIM5	ENSG00000163110.15	ENST00000437932.5:ENST00000615540.4:ENST00000318007.9:ENST00000380180.7:ENST00000514830.5:ENST00000509333.5:ENST00000503974.5:ENST00000317968.9:ENST00000627587.2:ENST00000542407.5:ENST00000514743.5:ENST00000508216.5:ENST00000511767.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	41	2	2.92665	3.8681650000000003	4.80968	0.0086017	0.00679828	0.083729	0.0711802
chr3	197077283	197077381	1901267	0	-	0.408163	(0.378,0.408]	chr3	190528	2	INTRON	INTRON	DLG1	ENSG00000075711.21	ENST00000667157.1:ENST00000346964.6:ENST00000656428.1:ENST00000663148.1:ENST00000655488.1:ENST00000357674.9:ENST00000671185.1:ENST00000658701.1:ENST00000667104.1:ENST00000661336.1:ENST00000669565.1:ENST00000670455.1:ENST00000656087.1:ENST00000670366.1:ENST00000653583.1:ENST00000653795.1:ENST00000671246.1:ENST00000661453.1:ENST00000665728.1:ENST00000664564.1:ENST00000653331.1:ENST00000660432.1:ENST00000660898.1:ENST00000657381.1:ENST00000659221.1:ENST00000654737.1:ENST00000669332.1:ENST00000659716.1:ENST00000660553.1:ENST00000664991.1:ENST00000419354.5:ENST00000661440.1:ENST00000667971.1:ENST00000670935.1:ENST00000668578.1:ENST00000666007.1:ENST00000661229.1:ENST00000660237.1:ENST00000657098.1:ENST00000661013.1:ENST00000436682.6:ENST00000452595.5:ENST00000662727.1:ENST00000422288.6:ENST00000448528.6:ENST00000443183.5:ENST00000656944.1:ENST00000392382.6:ENST00000450955.5:ENST00000658155.1:ENST00000669714.1:ENST00000654733.1:ENST00000469073.2:ENST00000419227.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	41	2	2.85854	3.86808	4.87762	0.0107837	0.00553849	0.0920575	0.0648867
chr2	55038117	55038217	1121286	0	-	0.36	(0.35,0.378]	chr2	120163	95	INTRON	INTRON	RTN4	ENSG00000115310.19	ENST00000404909.5:ENST00000394611.6:ENST00000317610.11:ENST00000357732.8:ENST00000337526.11:ENST00000357376.7:ENST00000405240.5:ENST00000438462.1:ENST00000427710.5	protein_coding	protein_coding	protein_coding	protein_coding	7	116	2	2.37783	3.868055	5.35828	0.00135282	4.27064e-4	0.0336321	0.018477
chr18	13664422	13664520	6951231	0	-	0.265306	[0,0.28]	chr18	687650	12	UTR3	UTR3:EXON_MRNA	FAM210A	ENSG00000177150.13	ENST00000322247.7:ENST00000651643.1:ENST00000402563.5	protein_coding	protein_coding	protein_coding	protein_coding	1	55	2	2.64309	3.86795	5.09281	0.0308646	0.00372534	0.13151	0.0561984
chr3	37337934	37338034	1396723	0	+	0.22	[0,0.28]	chr3	146437	2	SS5_PROX	SS5_PROX:INTRON	GOLGA4	ENSG00000144674.17	ENST00000444882.5:ENST00000356847.8:ENST00000361924.7:ENST00000437131.1	protein_coding	protein_coding	protein_coding	protein_coding	1	55	2	2.64309	3.86795	5.09281	0.0308646	0.00372534	0.13151	0.0561984
chr14	103684845	103684915	5828217	0	+	0.428571	(0.408,0.44]	chr14	553122	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	KLC1	ENSG00000126214.22	ENST00000348520.10:ENST00000380038.7:ENST00000334553.11:ENST00000389744.8:ENST00000555836.5:ENST00000347839.10:ENST00000553286.5:ENST00000557575.5:ENST00000452929.6:ENST00000554280.5:ENST00000557450.5:ENST00000554228.5:ENST00000634686.1:ENST00000246489.11:ENST00000445352.8:ENST00000537046.6:ENST00000553325.5:ENST00000555856.1:ENST00000535194.2:ENST00000553680.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	59	2	2.05947	3.86781	5.67615	0.0333232	6.28788e-5	0.134145	0.00658818
chr16	67962618	67962712	6506228	0	-	0.510638	(0.476,0.515]	chr16	629870	5	EXON_MRNA	EXON_MRNA:INTRON	SLC12A4	ENSG00000124067.17	ENST00000422611.6:ENST00000316341.8:ENST00000572037.5:ENST00000541864.6:ENST00000570802.5:ENST00000576616.5:ENST00000537830.6:ENST00000573023.6:ENST00000576377.1:ENST00000571299.5:ENST00000572010.5:ENST00000576462.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	165	2	3.12466	3.867535	4.61041	4.9835e-5	1.88543e-6	0.00611327	8.35956e-4
chr17	30734257	30734355	6589828	0	+	0.520408	(0.515,0.57]	chr17	640847	3	EXON_LNCRNA	EXON_LNCRNA:INTRON	SUZ12P1	ENSG00000264538.7	ENST00000578070.5:ENST00000579526.5:ENST00000690405.1:ENST00000497969.6:ENST00000578195.6:ENST00000582557.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	15	464	2	3.66926	3.8674999999999997	4.06574	9.43699e-9	1.93317e-9	3.35807e-5	8.54891e-6
chr7	127906216	127906316	3404959	0	+	0.41	(0.408,0.44]	chr7	318161	10	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000465900.5:ENST00000486037.1:ENST00000484767.5:ENST00000492840.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	65	2	2.38928	3.86738	5.34548	0.0039105	9.40657e-4	0.0569957	0.0280776
chr11	9218306	9218406	4908601	0	-	0.25	[0,0.28]	chr11	460107	103	INTRON	INTRON	DENND5A	ENSG00000184014.9	ENST00000328194.8:ENST00000681203.1:ENST00000530780.2:ENST00000679999.1:ENST00000680470.1:ENST00000680554.1:ENST00000681425.1:ENST00000679568.1:ENST00000679446.1:ENST00000680294.1:ENST00000680742.1:ENST00000680885.1:ENST00000530044.5:ENST00000526707.5:ENST00000532696.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	56	2	2.20927	3.86723	5.52519	0.0794763	8.21427e-4	0.19979	0.0261674
chr15	63674141	63674241	6199259	0	-	0.2	[0,0.28]	chr15	591229	4	SS5_PROX	SS5_PROX:INTRON	HERC1	ENSG00000103657.14	ENST00000443617.7	protein_coding	protein_coding	protein_coding	protein_coding	1	56	2	2.20927	3.86723	5.52519	0.0794763	8.21427e-4	0.19979	0.0261674
chr6	13659531	13659631	3058702	0	-	0.25	[0,0.28]	chr6	284542	3	INTRON	INTRON	RANBP9	ENSG00000010017.13	ENST00000011619.6	protein_coding	protein_coding	protein_coding	protein_coding	1	56	2	2.20927	3.86723	5.52519	0.0794763	8.21427e-4	0.19979	0.0261674
chrY	11208051	11208150	7930093	0	-	0.363636	(0.35,0.378]	chrY	807176	446	INTRON	INTRON	ENSG00000278212	ENSG00000278212.3	ENST00000652671.1:ENST00000651211.2:ENST00000687423.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	3	68	2	2.15877	3.8672050000000002	5.57564	0.0102036	5.93654e-4	0.089002	0.0225024
chrX	123642401	123642499	7878133	0	-	0.387755	(0.378,0.408]	chrX	802513	14	INTRON	INTRON	THOC2	ENSG00000125676.20	ENST00000245838.13:ENST00000355725.8:ENST00000491737.5	protein_coding	protein_coding	protein_coding	protein_coding	5	170	2	2.8423	3.8672	4.8921	2.84247e-4	2.91562e-7	0.015495	2.69632e-4
chr6	17660259	17660358	3065736	0	-	0.313131	(0.28,0.32]	chr6	284824	80	INTRON	INTRON	NUP153	ENSG00000124789.12	ENST00000613258.4:ENST00000537253.5:ENST00000262077.3	protein_coding	protein_coding	protein_coding	protein_coding	5	99	2	2.17573	3.86709	5.55845	0.00339266	0.00141854	0.0536193	0.0340865
chr6	42783796	42783896	2866783	0	+	0.61	(0.57,1]	chr6	271294	13	INTRON	INTRON	BICRAL	ENSG00000112624.13	ENST00000614467.4:ENST00000314073.10	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	3.13254	3.867075	4.60161	0.00310655	0.00142229	0.0512344	0.0340865
chr10	125055533	125055633	4713284	0	-	0.58	(0.57,1]	chr10	434897	160	INTRON	INTRON	CTBP2	ENSG00000175029.17	ENST00000337195.9:ENST00000411419.6:ENST00000494626.6:ENST00000531469.5:ENST00000460976.5:ENST00000476817.1:ENST00000530884.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	27	2	3.02967	3.8669700000000002	4.70427	0.00471306	9.25341e-4	0.0631419	0.0278396
chr9	130744354	130744454	4214168	0	+	0.59	(0.57,1]	chr9	386427	295	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000393293.4	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	3.02967	3.8669700000000002	4.70427	0.00471306	9.25341e-4	0.0631419	0.0278396
chr16	11910805	11910904	6446360	0	-	0.414141	(0.408,0.44]	chr16	621130	68	INTRON	INTRON	GSPT1	ENSG00000103342.13	ENST00000434724.7:ENST00000439887.6:ENST00000420576.6:ENST00000568849.5:ENST00000562169.1	protein_coding	protein_coding	protein_coding	protein_coding	4	75	2	2.29426	3.86683	5.4394	0.00277178	6.50925e-4	0.04874	0.0232863
chr15	84999537	84999637	6089107	0	+	0.47	(0.44,0.476]	chr15	579504	168	INTRON	INTRON	PDE8A	ENSG00000073417.15	ENST00000310298.8:ENST00000557957.5:ENST00000394553.6:ENST00000339708.9:ENST00000478717.5:ENST00000485596.5:ENST00000559742.5:ENST00000559086.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	82	2	1.892	3.8667350000000003	5.84147	0.00935701	1.03947e-4	0.0858596	0.00915599
chr10	14926642	14926742	4561613	0	-	0.27	[0,0.28]	chr10	420963	4	SS5_PROX	SS5_PROX:INTRON	DCLRE1C	ENSG00000152457.18	ENST00000378289.8:ENST00000378278.7:ENST00000378246.6:ENST00000357717.6:ENST00000378258.5:ENST00000378249.5:ENST00000396817.6:ENST00000378255.5:ENST00000378254.5:ENST00000492201.5:ENST00000489161.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	56	2	2.81922	3.8666799999999997	4.91414	0.0197411	0.0064519	0.109608	0.0730725
chr9	123228855	123228954	4340083	0	-	0.40404	(0.378,0.408]	chr9	398957	151	INTRON	INTRON	STRBP	ENSG00000165209.19	ENST00000348403.10:ENST00000360998.3:ENST00000407982.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	55	2	2.61188	3.86658	5.12128	0.0047055	0.00251746	0.0631419	0.0446195
chr9	4729790	4729890	4228815	0	-	0.33	(0.32,0.35]	chr9	388786	68	INTRON	INTRON	AK3	ENSG00000147853.17	ENST00000381809.8:ENST00000611749.4:ENST00000359883.6:ENST00000447596.4	protein_coding	protein_coding	protein_coding	protein_coding	5	222	2	3.37872	3.8664949999999996	4.35427	6.50329e-5	3.95947e-7	0.0071508	3.26637e-4
chr1	225997142	225997239	646438	0	-	0.43299	(0.408,0.44]	chr1	76607	14	INTRON	INTRON	SDE2	ENSG00000143751.10	ENST00000272091.8	protein_coding	protein_coding	protein_coding	protein_coding	4	75	2	1.79818	3.86648	5.93478	0.020428	7.42058e-5	0.122109	0.00770735
chr6	131592550	131592641	3221288	0	-	0.285714	(0.28,0.32]	chr6	299347	2	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MED23	ENSG00000112282.18	ENST00000354577.8:ENST00000368068.8:ENST00000479213.1:ENST00000368060.7:ENST00000368058.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	49	2	2.29724	3.8664699999999996	5.4357	0.0554156	0.00215368	0.18407	0.0417866
chr10	119596747	119596841	4706036	0	-	0.670213	(0.57,1]	chr10	434256	4	UTR5	UTR5:EXON_MRNA	TIAL1	ENSG00000151923.18	ENST00000436547.7:ENST00000489822.5:ENST00000497671.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	175	2	2.89105	3.866465	4.84188	8.61218e-7	3.99324e-10	5.24703e-4	2.7008e-6
chr11	72290874	72290974	4977161	0	-	0.48	(0.476,0.515]	chr11	470238	55	UTR3	UTR3:EXON_MRNA	CLPB	ENSG00000162129.15	ENST00000294053.9:ENST00000538039.6	protein_coding	protein_coding	protein_coding	protein_coding	4	89	2	2.55236	3.866375	5.18039	0.00104106	6.58744e-4	0.0293739	0.0232396
chr16	89547619	89547715	6420758	0	+	0.5625	(0.515,0.57]	chr16	616276	10	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	SPG7	ENSG00000197912.16	ENST00000647079.1:ENST00000646303.1:ENST00000643649.1:ENST00000644498.1:ENST00000645897.1:ENST00000643668.1:ENST00000644225.1:ENST00000645818.2:ENST00000645977.1:ENST00000645063.1:ENST00000646263.1:ENST00000643724.1:ENST00000644781.1:ENST00000644901.1:ENST00000645042.1:ENST00000646531.1:ENST00000646930.1:ENST00000644210.1:ENST00000646589.1:ENST00000268704.7:ENST00000646826.1:ENST00000646716.1:ENST00000646958.1:ENST00000643105.1:ENST00000645354.1:ENST00000642334.1:ENST00000647227.1:ENST00000646445.1:ENST00000643954.1:ENST00000646399.1:ENST00000644671.1:ENST00000644748.1:ENST00000643496.1:ENST00000647032.1:ENST00000644751.1:ENST00000642427.1:ENST00000645886.1:ENST00000646454.1:ENST00000644171.1:ENST00000566682.2:ENST00000642263.1:ENST00000644556.1:ENST00000645842.1:ENST00000643734.1:ENST00000642814.1:ENST00000644061.1:ENST00000643350.1:ENST00000645392.1:ENST00000647302.1:ENST00000644930.1:ENST00000647123.1:ENST00000643409.1:ENST00000642226.1:ENST00000646005.1:ENST00000642984.1:ENST00000647491.1:ENST00000645952.1:ENST00000645944.1:ENST00000646543.1:ENST00000569820.6:ENST00000566221.5:ENST00000645742.1:ENST00000563218.6:ENST00000644464.1:ENST00000561911.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	49	2	2.62817	3.866325	5.10448	0.004048	0.0010345	0.0578376	0.029231300000000002
chr11	68553744	68553844	4818276	0	+	0.37	(0.35,0.378]	chr11	448966	2	SS3_PROX	SS3_PROX:INTRON	PPP6R3	ENSG00000110075.15	ENST00000529907.5:ENST00000534534.5:ENST00000524845.5:ENST00000393800.7:ENST00000265637.8:ENST00000524904.5:ENST00000393801.7:ENST00000265636.9:ENST00000529710.5:ENST00000527403.6	protein_coding	protein_coding	protein_coding	protein_coding	2	98	2	3.73609	3.866295	3.9965	3.31057e-4	1.64039e-4	0.0161599	0.0116917
chr1	215571711	215571809	314219	0	+	0.581633	(0.57,1]	chr1	36190	36	INTRON	INTRON	KCTD3	ENSG00000136636.13	ENST00000259154.9	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	3.56369	3.86625	4.16881	0.00574776	4.26536e-4	0.0681402	0.0189958
chr3	122495238	122495337	1801422	0	-	0.333333	(0.32,0.35]	chr3	181026	275	INTRON	INTRON	KPNA1	ENSG00000114030.13	ENST00000344337.11:ENST00000485027.5:ENST00000494339.5:ENST00000465882.5:ENST00000482287.5:ENST00000476916.5:ENST00000493510.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	44	2	2.96746	3.866235	4.76501	0.0114287	0.00815799	0.0886611	0.0810802
chr3	183738323	183738422	1580701	0	+	0.323232	(0.32,0.35]	chr3	163062	11	INTRON	INTRON	YEATS2	ENSG00000163872.16	ENST00000305135.10	protein_coding	protein_coding	protein_coding	protein_coding	1	44	2	2.96746	3.866235	4.76501	0.0114287	0.00815799	0.0886611	0.0810802
chr5	60630483	60630582	2626809	0	-	0.424242	(0.408,0.44]	chr5	249561	19	INTRON	INTRON	DEPDC1B	ENSG00000035499.13	ENST00000265036.10:ENST00000453022.6:ENST00000512078.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	72	2	2.33039	3.8662349999999996	5.40208	0.00598147	2.37882e-4	0.0674604	0.0136195
chr13	95206881	95206981	5638923	0	-	0.45	(0.44,0.476]	chr13	537132	1	SS3_PROX	SS3_PROX:INTRON	ABCC4	ENSG00000125257.16	ENST00000645237.2:ENST00000643051.1:ENST00000643842.1:ENST00000646439.1:ENST00000643816.1:ENST00000536256.3:ENST00000643556.1:ENST00000629385.1:ENST00000642524.1:ENST00000645532.1:ENST00000644471.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	43	2	2.80275	3.8662150000000004	4.92968	0.0146513	0.00171443	0.0982604	0.0381936
chr3	47643562	47643662	1683665	0	-	0.27	[0,0.28]	chr3	171996	44	INTRON	INTRON	SMARCC1	ENSG00000173473.11	ENST00000254480.10:ENST00000425518.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	50	2	2.90797	3.86615	4.82433	0.0200334	0.0118539	0.109608	0.0962115
chr6	116649886	116649985	3197765	0	-	0.272727	[0,0.28]	chr6	297846	19	INTRON	INTRON	ZUP1	ENSG00000153975.10	ENST00000368576.8	protein_coding	protein_coding	protein_coding	protein_coding	1	50	2	2.90797	3.86615	4.82433	0.0200334	0.0118539	0.109608	0.0962115
chr7	43723934	43724034	3526323	0	-	0.24	[0,0.28]	chr7	328785	121	INTRON	INTRON	COA1	ENSG00000106603.20	ENST00000415076.6:ENST00000446330.6:ENST00000446564.5:ENST00000438444.5:ENST00000223336.11:ENST00000310564.10:ENST00000415798.5:ENST00000431651.5:ENST00000451651.5:ENST00000418140.5:ENST00000448704.5:ENST00000470156.1:ENST00000457939.1:ENST00000420441.1:ENST00000478504.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	50	2	2.90797	3.86615	4.82433	0.0200334	0.0118539	0.109608	0.0962115
chr1	96804384	96804484	168779	0	+	0.35	(0.32,0.35]	chr1	18250	2	SS3_PROX	SS3_PROX:INTRON	PTBP2	ENSG00000117569.19	ENST00000482253.5:ENST00000675735.1:ENST00000609116.5:ENST00000674951.1:ENST00000675080.1:ENST00000426398.3:ENST00000370197.5:ENST00000370198.5:ENST00000476419.5:ENST00000676292.1:ENST00000676096.1:ENST00000675365.1:ENST00000674579.1:ENST00000675401.1:ENST00000459735.5:ENST00000476783.5:ENST00000492905.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	48	2	2.4458	3.86605	5.2863	0.0425977	7.56575e-4	0.148082	0.0251966
chr22	28522463	28522563	7571360	0	-	0.34	(0.32,0.35]	chr22	774287	795	INTRON	INTRON	TTC28	ENSG00000100154.15	ENST00000397906.7	protein_coding	protein_coding	protein_coding	protein_coding	1	44	2	2.71269	3.8659299999999996	5.01917	0.0181461	0.0055659	0.114853	0.0648867
chr9	111422899	111422998	4314667	0	-	0.323232	(0.32,0.35]	chr9	396775	3	SS5_PROX	SS5_PROX:INTRON	ECPAS	ENSG00000136813.15	ENST00000684092.1:ENST00000338205.9:ENST00000259335.8:ENST00000602447.5	protein_coding	protein_coding	protein_coding	protein_coding	1	44	2	2.71269	3.8659299999999996	5.01917	0.0181461	0.0055659	0.114853	0.0648867
chrX	134772040	134772138	7893243	0	-	0.346939	(0.32,0.35]	chrX	803513	8	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	PABIR2	ENSG00000156504.17	ENST00000343004.10:ENST00000370790.5:ENST00000298090.10:ENST00000478384.5:ENST00000486347.5:ENST00000465128.3:ENST00000493333.5:ENST00000611027.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	44	2	2.71269	3.8659299999999996	5.01917	0.0181461	0.0055659	0.114853	0.0648867
chr5	131688746	131688846	2719651	0	-	0.38	(0.378,0.408]	chr5	255672	92	INTRON	INTRON	FNIP1	ENSG00000217128.13	ENST00000510461.6:ENST00000307954.12:ENST00000307968.11:ENST00000511848.1	protein_coding	protein_coding	protein_coding	protein_coding	5	86	2	2.22007	3.8659049999999997	5.51174	0.0022373	5.93655e-4	0.0435144	0.0225024
chr17	67154402	67154501	6824898	0	-	0.212121	[0,0.28]	chr17	674452	28	INTRON	INTRON	HELZ	ENSG00000198265.12	ENST00000358691.10:ENST00000579953.5:ENST00000580168.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	50	2	2.57033	3.8658149999999996	5.1613	0.0305273	0.00866441	0.143385	0.0787025
chr1	207714711	207714811	304653	0	+	0.43	(0.408,0.44]	chr1	35050	40	INTRON	INTRON	CR1L	ENSG00000197721.17	ENST00000508064.7:ENST00000294997.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	46	2	3.20034	3.86561	4.53088	0.00669275	0.00398025	0.0738715	0.0549214
chr7	131415607	131415707	3417327	0	+	0.36	(0.35,0.378]	chr7	319231	5	INTRON	INTRON	MKLN1	ENSG00000128585.18	ENST00000421797.6:ENST00000352689.11:ENST00000494785.5:ENST00000458153.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	68	2	2.28182	3.8655049999999997	5.44919	0.00637232	9.66659e-4	0.0724821	0.0282401
chr16	23685877	23685976	6323702	0	+	0.30303	(0.28,0.32]	chr16	605659	14	INTRON	INTRON	PLK1	ENSG00000166851.15	ENST00000562272.5:ENST00000300093.9:ENST00000562407.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	46	2	2.80157	3.86543	4.92929	0.0147132	0.0098607	0.106558	0.0838128
chr4	78844727	78844827	1982073	0	+	0.31	(0.28,0.32]	chr4	198486	4	SS3_PROX	SS3_PROX:INTRON	BMP2K	ENSG00000138756.19	ENST00000389010.7:ENST00000502613.3:ENST00000502871.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	75	2	2.25298	3.865385	5.47779	0.00791652	0.00187048	0.0797304	0.0390476
chr9	19101428	19101527	4236589	0	-	0.484848	(0.476,0.515]	chr9	389435	43	INTRON	INTRON	HAUS6	ENSG00000147874.11	ENST00000380502.8	protein_coding	protein_coding	protein_coding	protein_coding	5	161	2	3.00083	3.8652750000000005	4.72972	6.46875e-5	1.91313e-6	0.00666922	9.42656e-4
chr10	124780863	124780963	4712437	0	-	0.31	(0.28,0.32]	chr10	434817	57	INTRON	INTRON	EEF1AKMT2	ENSG00000203791.15	ENST00000652548.1:ENST00000466270.5:ENST00000368836.7:ENST00000464099.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	62	2	2.42868	3.865105	5.30153	0.0105331	0.00332518	0.0908969	0.0512081
chr13	110629946	110630046	5543821	0	+	0.38	(0.378,0.408]	chr13	529660	20	INTRON	INTRON	NAXD	ENSG00000213995.12	ENST00000680254.1:ENST00000424185.7:ENST00000679389.1:ENST00000679968.1:ENST00000470164.2:ENST00000680505.1:ENST00000309957.3:ENST00000680312.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	41	2	2.9917	3.865045	4.73839	0.00837252	0.0068789	0.0774402	0.0749442
chr1	175988601	175988696	589509	0	-	0.505263	(0.476,0.515]	chr1	70882	3	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	COP1	ENSG00000143207.21	ENST00000367669.8:ENST00000367667.5:ENST00000461830.6:ENST00000367666.5:ENST00000649803.1:ENST00000308769.12	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	56	2	2.06491	3.86498	5.66505	0.0304733	2.08835e-4	0.143385	0.0131276
chr1	179876377	179876477	593455	0	-	0.38	(0.378,0.408]	chr1	71119	2	SS3_PROX	SS3_PROX:INTRON	TOR1AIP2	ENSG00000169905.13	ENST00000367612.7:ENST00000609928.6:ENST00000482587.5:ENST00000495650.1:ENST00000474318.1:ENST00000483123.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	56	2	2.17608	3.86498	5.55388	0.0218783	5.01023e-4	0.123836	0.0206993
chr11	47830775	47830875	4951989	0	-	0.33	(0.32,0.35]	chr11	464617	32	INTRON	INTRON	NUP160	ENSG00000030066.14	ENST00000694866.1:ENST00000378460.7:ENST00000530326.5:ENST00000528071.5:ENST00000528501.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	60	2	2.71053	3.8648499999999997	5.01917	0.0055659	0.00346747	0.0648867	0.0539802
chr5	154860761	154860859	2527697	0	+	0.408163	(0.378,0.408]	chr5	241732	5	INTRON	INTRON	CNOT8	ENSG00000155508.14	ENST00000521174.5:ENST00000523698.5:ENST00000517876.5:ENST00000520472.5:ENST00000519211.5:ENST00000522458.5:ENST00000403027.6:ENST00000521450.5:ENST00000519903.5:ENST00000517568.5:ENST00000524105.5:ENST00000519430.5:ENST00000285896.11:ENST00000521583.5:ENST00000520671.5:ENST00000518028.5:ENST00000519404.5:ENST00000521729.5:ENST00000519394.5:ENST00000518775.5:ENST00000522644.5:ENST00000521402.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	41	2	2.78705	3.864775	4.9425	0.0135539	0.00452675	0.101363	0.0595107
chrX	47563729	47563829	7656206	0	+	0.37	(0.35,0.378]	chrX	783489	4	SS5_PROX	SS5_PROX:INTRON	ARAF	ENSG00000078061.14	ENST00000377045.9:ENST00000377039.2:ENST00000489496.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	43	2	3.16371	3.864605	4.5655	0.0155464	0.00383956	0.100909	0.0562562
chr6	161060429	161060528	3025182	0	+	0.343434	(0.32,0.35]	chr6	282325	101	INTRON	INTRON	MAP3K4	ENSG00000085511.20	ENST00000366919.6:ENST00000392142.9:ENST00000542952.5:ENST00000366920.6:ENST00000348824.11:ENST00000544041.5:ENST00000490904.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	78	2	1.8526	3.86444	5.87628	0.0332438	5.28936e-5	0.134145	0.00592337
chr15	82419813	82419879	6076193	0	+	0.348485	(0.32,0.35]	chr15	578786	2	SS3_PROX	SS3_PROX:INTRON	UBE2Q2P2:ENSG00000278202	ENSG00000259429.5:ENSG00000278202.1	ENST00000613592.4:ENST00000613086.1	lncRNA	lncRNA	lncRNA:transcribed_unprocessed_pseudogene	lncRNA:transcribed_unprocessed_pseudogene	2	60	2	2.13945	3.86434	5.58923	0.0254517	8.12357e-4	0.133676	0.0263656
chr2	32553267	32553367	732826	0	+	0.32	(0.28,0.32]	chr2	84648	34	INTRON	INTRON	BIRC6	ENSG00000115760.15	ENST00000421745.7:ENST00000471232.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	48	2	2.38101	3.86433	5.34765	0.0456017	0.00287138	0.164236	0.0474836
chr6	10926932	10927001	2812162	0	+	0.478261	(0.476,0.515]	chr6	264633	1	SS3_PROX	SS3_PROX:INTRON	SYCP2L	ENSG00000153157.13	ENST00000341041.8:ENST00000283141.11:ENST00000543878.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	157	2	3.81128	3.864325	3.91737	1.64105e-5	4.6503e-6	0.00324999	0.00144728
chr5	54310294	54310354	2620917	0	-	0.516667	(0.515,0.57]	chr5	248871	1	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2:ENST00000505630.5:ENST00000505383.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	139	2	3.22682	3.86432	4.50182	1.10302e-5	4.30039e-6	0.00244536	0.00151054
chr1	100441562	100441659	173523	0	+	0.309278	(0.28,0.32]	chr1	18836	12	INTRON	INTRON	CDC14A	ENSG00000079335.20	ENST00000646665.1:ENST00000644844.1:ENST00000635056.2:ENST00000647005.1:ENST00000647203.1:ENST00000644676.1:ENST00000361544.11:ENST00000370124.8:ENST00000336454.5:ENST00000644813.1:ENST00000455467.6:ENST00000646563.1:ENST00000469387.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	46	2	2.86113	3.86422	4.86731	0.0122675	0.0116253	0.0969406	0.0889104
chr8	31142441	31142525	3729046	0	+	0.285714	(0.28,0.32]	chr8	346665	3	SS3_PROX	SS3_PROX:INTRON	WRN	ENSG00000165392.11	ENST00000650667.1:ENST00000298139.7:ENST00000521620.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	46	2	2.86113	3.86422	4.86731	0.0122675	0.0116253	0.0969406	0.0889104
chr1	23316788	23316887	399310	0	-	0.30303	(0.28,0.32]	chr1	47847	27	INTRON	INTRON	HNRNPR	ENSG00000125944.21	ENST00000478691.5:ENST00000302271.11:ENST00000374616.7:ENST00000374612.5:ENST00000675048.1:ENST00000606561.5:ENST00000427764.3:ENST00000463552.5:ENST00000470941.5	protein_coding	protein_coding	protein_coding	protein_coding	1	51	2	2.32871	3.864165	5.39962	0.0581621	7.06751e-4	0.167723	0.0241881
chr1	35979351	35979449	71633	0	+	0.306122	(0.28,0.32]	chr1	9158	55	INTRON	INTRON	AGO3	ENSG00000126070.20	ENST00000324350.9:ENST00000397828.3:ENST00000634486.1:ENST00000373191.9:ENST00000246314.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	46	2	2.73945	3.864085	4.98872	0.017681	0.00838468	0.11319	0.0774402
chr1	211978071	211978171	631802	0	-	0.29	(0.28,0.32]	chr1	74723	4	SS5_PROX	SS5_PROX:INTRON	INTS7	ENSG00000143493.13	ENST00000469606.5:ENST00000366994.8:ENST00000366993.7:ENST00000366992.7:ENST00000440600.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	46	2	2.73945	3.864085	4.98872	0.017681	0.00838468	0.11319	0.0774402
chr12	123165001	123165101	5443363	0	-	0.3	(0.28,0.32]	chr12	520777	3	SS5_PROX	SS5_PROX:INTRON	MPHOSPH9	ENSG00000051825.15	ENST00000606320.6:ENST00000541076.6:ENST00000545556.6:ENST00000302373.8:ENST00000539024.5:ENST00000538250.5:ENST00000607619.1:ENST00000606321.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	46	2	2.73945	3.864085	4.98872	0.017681	0.00838468	0.11319	0.0774402
chr3	45735773	45735873	1417524	0	+	0.31	(0.28,0.32]	chr3	148736	4	SS5_PROX	SS5_PROX:INTRON	SACM1L	ENSG00000211456.13	ENST00000455997.5:ENST00000418611.5:ENST00000672477.1:ENST00000441228.5:ENST00000389061.10:ENST00000672858.2:ENST00000433336.1:ENST00000464102.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	46	2	2.73945	3.864085	4.98872	0.017681	0.00838468	0.11319	0.0774402
chr5	131669562	131669662	2719455	0	-	0.32	(0.28,0.32]	chr5	255647	172	INTRON	INTRON	FNIP1	ENSG00000217128.13	ENST00000510461.6:ENST00000307954.12:ENST00000307968.11	protein_coding	protein_coding	protein_coding	protein_coding	1	46	2	2.73945	3.864085	4.98872	0.017681	0.00838468	0.11319	0.0774402
chr1	42827330	42827430	84403	0	+	0.43	(0.408,0.44]	chr1	11098	12	INTRON	INTRON	ERMAP	ENSG00000164010.15	ENST00000372517.8:ENST00000643061.1:ENST00000645239.1:ENST00000647120.1:ENST00000487556.6:ENST00000642150.1:ENST00000372514.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	54	2	2.64829	3.8640600000000003	5.07983	0.00400062	0.00247652	0.057767	0.0446195
chr12	121796642	121796742	5439436	0	-	0.58	(0.57,1]	chr12	520127	4	SS3_PROX	SS3_PROX:INTRON	RHOF:LINC01089	ENSG00000139725.8:ENSG00000212694.8	ENST00000546227.5:ENST00000541657.5:ENST00000545544.1:ENST00000429892.5:ENST00000542933.5:ENST00000537157.5:ENST00000428029.6:ENST00000541694.5:ENST00000543167.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA:processed_transcript	8	113	2	2.74736	3.8639099999999997	4.98046	1.60343e-5	2.07046e-8	0.00302373	4.66779e-5
chr6	161066001	161066100	3025238	0	+	0.343434	(0.32,0.35]	chr6	282325	157	INTRON	INTRON	MAP3K4	ENSG00000085511.20	ENST00000366919.6:ENST00000392142.9:ENST00000542952.5:ENST00000366920.6:ENST00000348824.11:ENST00000544041.5:ENST00000490904.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	59	2	2.30476	3.863905	5.42305	0.0151817	0.00149027	0.108535	0.035
chr1	245783478	245783577	673456	0	-	0.353535	(0.35,0.378]	chr1	79659	190	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000366517.5:ENST00000366516.5:ENST00000482592.5:ENST00000490107.6:ENST00000470510.5:ENST00000483072.5:ENST00000490322.1:ENST00000493441.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	43	2	2.57049	3.86386	5.15723	0.0262669	0.00272706	0.133676	0.0467523
chr7	111272996	111273096	3621212	0	-	0.49	(0.476,0.515]	chr7	337093	3091	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	54	2	2.32001	3.86385	5.40769	0.0136217	6.23078e-4	0.101682	0.0229151
chr17	22127379	22127479	6578937	0	+	0.18	[0,0.28]	chr17	639556	361	INTRON	INTRON	UBBP4	ENSG00000263563.7	ENST00000648259.1:ENST00000688301.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	2	126	2	3.50032	3.86378	4.22724	0.00245166	5.69854e-5	0.0446188	0.00617188
chr19	5069611	5069711	7004430	0	+	0.52	(0.515,0.57]	chr19	694835	216	INTRON	INTRON	KDM4B	ENSG00000127663.15	ENST00000159111.9:ENST00000611640.4:ENST00000381759.8:ENST00000536461.5:ENST00000592175.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	37	2	3.12663	3.8628850000000003	4.59914	0.00616166	0.00374498	0.0676501	0.0562234
chr14	69139452	69139552	5915976	0	-	0.45	(0.44,0.476]	chr14	562032	167	INTRON	INTRON	DCAF5	ENSG00000139990.18	ENST00000341516.10:ENST00000554215.5:ENST00000556847.5:ENST00000557386.5:ENST00000556111.1:ENST00000389997.10:ENST00000554681.1:ENST00000553943.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	41	2	3.2029	3.8628	4.5227	0.0128818	0.00308681	0.0926667	0.0510391
chr13	79400103	79400203	5626348	0	-	0.32	(0.28,0.32]	chr13	536667	208	INTRON	INTRON	RBM26	ENSG00000139746.16	ENST00000438737.3:ENST00000438724.5:ENST00000622611.4:ENST00000267229.11:ENST00000472143.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	111	2	3.52126	3.862675	4.20409	0.00175369	4.29699e-5	0.0376491	0.00530629
chr7	101842760	101842860	3366616	0	+	0.25	[0,0.28]	chr7	315215	234	INTRON	INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000497815.5:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000607092.1:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000558469.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	55	2	2.68918	3.86243	5.03568	0.0275571	0.00446141	0.123904	0.0610799
chr3	37115495	37115595	1656020	0	-	0.43	(0.408,0.44]	chr3	169985	4	SS3_PROX	SS3_PROX:INTRON	LRRFIP2	ENSG00000093167.18	ENST00000336686.9:ENST00000354379.8:ENST00000421276.6:ENST00000396428.6:ENST00000440230.5:ENST00000416425.5	protein_coding	protein_coding	protein_coding	protein_coding	3	65	2	2.42808	3.8621	5.29612	0.00331055	0.00113523	0.0527031	0.0307488
chr3	15818905	15819005	1624036	0	-	0.34	(0.32,0.35]	chr3	168034	42	INTRON	INTRON	ANKRD28	ENSG00000206560.12	ENST00000399451.6:ENST00000412318.5:ENST00000439830.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	45	2	3.18392	3.8619000000000003	4.53988	0.0202178	0.00379806	0.109913	0.0562562
chr6	17953325	17953425	3068210	0	-	0.33	(0.32,0.35]	chr6	285105	15	INTRON	INTRON	KIF13A	ENSG00000137177.20	ENST00000378814.9:ENST00000259711.11:ENST00000378826.6:ENST00000378843.6:ENST00000636847.1:ENST00000507576.1:ENST00000505588.1:ENST00000502704.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	45	2	3.18392	3.8619000000000003	4.53988	0.0202178	0.00379806	0.109913	0.0562562
chr6	169667385	169667484	3266773	0	-	0.393939	(0.378,0.408]	chr6	303226	3	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	WDR27	ENSG00000184465.16	ENST00000448612.6:ENST00000648472.1:ENST00000423258.5:ENST00000647790.1:ENST00000647873.1:ENST00000649303.1:ENST00000647889.1:ENST00000648017.1:ENST00000496752.1:ENST00000650296.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	168	2	2.99704	3.861825	4.72661	6.84146e-5	2.73145e-6	0.00684369	0.0011704
chr16	89648278	89648378	6543685	0	-	0.73	(0.57,1]	chr16	634307	7	CDS	CDS:UTR3:EXON_MRNA:INTRON	CHMP1A	ENSG00000131165.16	ENST00000675909.1:ENST00000397901.8:ENST00000676355.1:ENST00000675161.1:ENST00000676402.1:ENST00000675016.1:ENST00000551981.6:ENST00000675309.1:ENST00000675952.1:ENST00000676342.1:ENST00000535997.7:ENST00000674799.1:ENST00000675536.1:ENST00000549328.2:ENST00000675778.1:ENST00000676118.1:ENST00000675076.1:ENST00000549139.5:ENST00000550102.5:ENST00000548650.1:ENST00000547614.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	77	2	3.18398	3.86174	4.5395	3.84422e-5	6.8256e-7	0.00528498	4.56025e-4
chr14	58298044	58298134	5904745	0	-	0.533333	(0.515,0.57]	chr14	560855	2	EXON_LNCRNA	EXON_LNCRNA	PSMA3-AS1	ENSG00000257621.9	ENST00000554360.5:ENST00000556002.5:ENST00000555275.5:ENST00000554378.5:ENST00000555707.5:ENST00000556400.5:ENST00000557660.5:ENST00000553657.5:ENST00000555037.1:ENST00000551597.6:ENST00000554309.1	lncRNA	lncRNA	lncRNA	lncRNA	5	141	2	2.71737	3.86173	5.00609	3.51318e-4	6.08429e-8	0.0174637	1.07836e-4
chr1	16335790	16335889	382453	0	-	0.494949	(0.476,0.515]	chr1	44888	200	INTRON	INTRON	FBXO42	ENSG00000037637.11	ENST00000375592.8	protein_coding	protein_coding	protein_coding	protein_coding	1	43	2	2.48527	3.86148	5.23769	0.03496	5.17244e-4	0.13747500000000001	0.0203753
chr17	28655086	28655186	6745254	0	-	0.49	(0.476,0.515]	chr17	662715	4	SS5_PROX	SS5_PROX:INTRON	SDF2	ENSG00000132581.10	ENST00000247020.9:ENST00000592250.5:ENST00000585749.5:ENST00000588472.6:ENST00000587788.1:ENST00000587629.5:ENST00000591903.1:ENST00000589788.1:ENST00000587338.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	43	2	2.48527	3.86148	5.23769	0.03496	5.17244e-4	0.13747500000000001	0.0203753
chr7	7683764	7683864	3276136	0	+	0.51	(0.476,0.515]	chr7	304695	72	INTRON	INTRON	UMAD1	ENSG00000219545.12	ENST00000493246.5:ENST00000682710.1:ENST00000463725.5:ENST00000638342.1:ENST00000636849.1:ENST00000639343.1:ENST00000639110.1:ENST00000471760.5:ENST00000482067.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	43	2	2.48527	3.86148	5.23769	0.03496	5.17244e-4	0.13747500000000001	0.0203753
chr6	35913468	35913568	3088750	0	-	0.52	(0.515,0.57]	chr6	288898	81	INTRON	INTRON	SRPK1	ENSG00000096063.16	ENST00000373825.7:ENST00000423325.6:ENST00000346162.10:ENST00000361690.7:ENST00000510290.5:ENST00000508473.5:ENST00000512445.5:ENST00000513367.1:ENST00000507909.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	80	2	2.02187	3.861385	5.7009	0.0055814	2.61423e-5	0.0649993	0.00402177
chr9	37320065	37320165	4119662	0	+	0.46	(0.44,0.476]	chr9	375411	140	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000461038.5:ENST00000488607.5:ENST00000463625.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	40	2	2.89047	3.8612450000000003	4.83202	0.00955699	0.00525002	0.0863913	0.0633615
chr12	70319564	70319664	5167208	0	+	0.24	[0,0.28]	chr12	489432	2	SS5_PROX	SS5_PROX:INTRON	CNOT2	ENSG00000111596.14	ENST00000418359.7:ENST00000552319.5:ENST00000550160.5:ENST00000551132.5:ENST00000548021.5:ENST00000550641.6:ENST00000229195.8:ENST00000552915.5:ENST00000549443.5:ENST00000552483.5:ENST00000547321.5:ENST00000548159.5:ENST00000549750.5:ENST00000551043.5:ENST00000548599.5:ENST00000550194.5:ENST00000551873.5:ENST00000552151.2:ENST00000548863.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	54	2	3.33854	3.861205	4.38387	0.0501911	0.00278022	0.156383	0.0488412
chr7	5671793	5671893	3473853	0	-	0.4	(0.378,0.408]	chr7	324821	189	INTRON	INTRON	RNF216	ENSG00000011275.19	ENST00000425013.6:ENST00000389902.8:ENST00000389900.8:ENST00000484458.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	55	2	2.65815	3.861135	5.06412	0.00391167	0.0030522	0.0569957	0.0493883
chr14	102611918	102612018	5822726	0	+	0.49	(0.476,0.515]	chr14	552490	182	INTRON	INTRON	RCOR1	ENSG00000089902.10	ENST00000262241.7	protein_coding	protein_coding	protein_coding	protein_coding	1	43	2	2.9435	3.8610299999999995	4.77856	0.00929849	0.00305743	0.0817766	0.0509893
chr15	41301137	41301237	6004560	0	+	0.45	(0.44,0.476]	chr15	571273	32	EXON_LNCRNA	EXON_LNCRNA:INTRON	OIP5-AS1	ENSG00000247556.6	ENST00000500949.6:ENST00000501665.2	lncRNA	lncRNA	lncRNA	lncRNA	21	769	2	3.57986	3.860935	4.14201	1.11678e-8	1.05883e-9	3.58435e-5	5.21753e-6
chr2	152747527	152747626	894547	0	+	0.40404	(0.378,0.408]	chr2	99130	103	INTRON	INTRON	ARL6IP6	ENSG00000177917.12	ENST00000690727.1:ENST00000685752.1:ENST00000688293.1:ENST00000686839.1:ENST00000689155.1:ENST00000691702.1:ENST00000691523.1:ENST00000688012.1:ENST00000687504.1:ENST00000455875.6:ENST00000692399.1:ENST00000425034.6:ENST00000686080.1:ENST00000326446.10:ENST00000463690.2:ENST00000688130.1:ENST00000495469.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	55	2	2.29798	3.86078	5.42358	0.0147606	8.39231e-4	0.106702	0.0266487
chr9	96574645	96574745	4296245	0	-	0.38	(0.378,0.408]	chr9	395079	75	INTRON	INTRON	CDC14B	ENSG00000081377.17	ENST00000474602.5:ENST00000412285.6:ENST00000375241.6:ENST00000375240.7:ENST00000463569.5:ENST00000415608.1:ENST00000496750.5:ENST00000463547.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	55	2	2.29798	3.86078	5.42358	0.0147606	8.39231e-4	0.106702	0.0266487
chr5	28858934	28859034	2330339	0	+	0.45	(0.44,0.476]	chr5	225135	484	INTRON	INTRON	LINC02109	ENSG00000259786.7	ENST00000658190.1	lncRNA	lncRNA	lncRNA	lncRNA	2	59	2	2.59632	3.8607250000000004	5.12513	0.00579248	7.96486e-4	0.0662959	0.0258804
chr20	34423587	34423685	7259724	0	+	0.489796	(0.476,0.515]	chr20	737454	32	INTRON	INTRON	ITCH	ENSG00000078747.16	ENST00000374864.10:ENST00000535650.7:ENST00000670516.1:ENST00000665484.1:ENST00000664852.1:ENST00000660337.1:ENST00000665428.1:ENST00000262650.10:ENST00000662871.1:ENST00000665346.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	41	2	3.19119	3.86071	4.53023	0.0119748	0.00325748	0.0899583	0.0524329
chr9	133258926	133259024	4369865	0	-	0.469388	(0.44,0.476]	chr9	402050	4	INTRON	INTRON	ABO	ENSG00000175164.16	ENST00000679909.1:ENST00000453660.4:ENST00000647353.1:ENST00000611156.4:ENST00000538324.2:ENST00000651471.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	97	2	1.68026	3.8606949999999998	6.04113	0.0174736	8.64562e-6	0.10482	0.00211124
chr11	73837834	73837934	4825674	0	+	0.46	(0.44,0.476]	chr11	450328	117	INTRON	INTRON	MRPL48	ENSG00000175581.14	ENST00000508278.6:ENST00000310614.12:ENST00000540162.5:ENST00000544140.5:ENST00000544819.5:ENST00000497094.6:ENST00000411840.6:ENST00000398483.7:ENST00000535277.5:ENST00000542303.5:ENST00000537007.5:ENST00000543058.1:ENST00000543374.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	43	2	2.5364	3.8606049999999996	5.18481	0.0309324	6.21872e-4	0.13151	0.0223951
chr1	35088726	35088826	68000	0	+	0.31	(0.28,0.32]	chr1	8657	89	INTRON	INTRON	ZMYM1	ENSG00000197056.11	ENST00000650449.1:ENST00000611874.4:ENST00000417119.5:ENST00000466390.5:ENST00000359858.9:ENST00000488455.5:ENST00000373330.1:ENST00000373329.5:ENST00000475654.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	46	2	2.91832	3.860435	4.80255	0.0137406	0.0102484	0.0949306	0.089002
chr10	48327463	48327563	4431197	0	+	0.3	(0.28,0.32]	chr10	408569	11	INTRON	INTRON	MAPK8	ENSG00000107643.17	ENST00000395611.7:ENST00000432379.5:ENST00000374189.6:ENST00000429041.6:ENST00000374179.8:ENST00000426557.5:ENST00000476134.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	46	2	2.91832	3.860435	4.80255	0.0137406	0.0102484	0.0949306	0.089002
chr11	34993262	34993358	4769791	0	+	0.291667	(0.28,0.32]	chr11	441352	5	INTRON	INTRON	PDHX	ENSG00000110435.13	ENST00000448838.8:ENST00000227868.9:ENST00000430469.6:ENST00000526309.1:ENST00000477173.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	46	2	2.91832	3.860435	4.80255	0.0137406	0.0102484	0.0949306	0.089002
chr9	136465461	136465561	4374857	0	-	0.29	(0.28,0.32]	chr9	403060	1	SS5_PROX	SS5_PROX:INTRON	SEC16A	ENSG00000148396.19	ENST00000290037.10:ENST00000313050.11:ENST00000371706.8:ENST00000453963.5:ENST00000684901.1:ENST00000690691.1:ENST00000431893.3:ENST00000472305.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	46	2	2.91832	3.860435	4.80255	0.0137406	0.0102484	0.0949306	0.089002
chr8	47895174	47895273	3945079	0	-	0.333333	(0.32,0.35]	chr8	361823	14	INTRON	INTRON	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7	protein_coding	protein_coding	protein_coding	protein_coding	5	221	2	3.39193	3.86041	4.32889	6.06707e-5	4.71802e-7	0.00684348	3.66588e-4
chr10	21866120	21866220	4577299	0	-	0.25	[0,0.28]	chr10	421906	3	INTRON	INTRON	DNAJC1	ENSG00000136770.11	ENST00000376980.8	protein_coding	protein_coding	protein_coding	protein_coding	2	67	2	2.24546	3.8602999999999996	5.47514	0.0206502	0.00354561	0.122348	0.0529186
chr1	155847694	155847794	564355	0	-	0.45	(0.44,0.476]	chr1	67384	144	INTRON	INTRON	GON4L	ENSG00000116580.20	ENST00000368331.6:ENST00000615926.4:ENST00000437809.5:ENST00000271883.9:ENST00000361040.9:ENST00000622608.2:ENST00000471341.5:ENST00000468867.1:ENST00000488251.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	43	2	2.86231	3.86024	4.85817	0.012214	0.00223254	0.0910127	0.0435144
chr19	47195736	47195835	7084534	0	+	0.444444	(0.44,0.476]	chr19	708804	151	INTRON	INTRON	SAE1	ENSG00000142230.13	ENST00000413379.7:ENST00000270225.12:ENST00000598840.5:ENST00000414294.6:ENST00000660039.1:ENST00000664120.1:ENST00000596995.1:ENST00000392776.3:ENST00000659110.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	43	2	2.86231	3.86024	4.85817	0.012214	0.00223254	0.0910127	0.0435144
chr1	114465987	114466086	527447	0	-	0.414141	(0.408,0.44]	chr1	62153	12	INTRON	INTRON	TRIM33	ENSG00000197323.12	ENST00000358465.7:ENST00000369543.6	protein_coding	protein_coding	protein_coding	protein_coding	1	41	2	3.20437	3.860205	4.51604	0.0137419	0.00306596	0.0949306	0.0509893
chr11	73831170	73831269	4825607	0	+	0.414141	(0.408,0.44]	chr11	450328	50	INTRON	INTRON	MRPL48	ENSG00000175581.14	ENST00000508278.6:ENST00000310614.12:ENST00000540162.5:ENST00000544140.5:ENST00000544819.5:ENST00000497094.6:ENST00000411840.6:ENST00000398483.7:ENST00000535277.5:ENST00000542303.5:ENST00000537007.5:ENST00000543058.1:ENST00000543374.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	41	2	3.20437	3.860205	4.51604	0.0137419	0.00306596	0.0949306	0.0509893
chr4	73173583	73173683	2159973	0	-	0.44	(0.408,0.44]	chr4	212788	41	INTRON	INTRON	ANKRD17	ENSG00000132466.20	ENST00000358602.9:ENST00000558247.5:ENST00000330838.10:ENST00000509867.6:ENST00000561029.1:ENST00000559367.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	41	2	3.20437	3.860205	4.51604	0.0137419	0.00306596	0.0949306	0.0509893
chr11	6215990	6216086	4902695	0	-	0.302083	(0.28,0.32]	chr11	459329	7	INTRON	INTRON	FHIP1B	ENSG00000051009.11	ENST00000265978.8:ENST00000449352.7	protein_coding	protein_coding	protein_coding	protein_coding	1	46	2	2.67453	3.86016	5.04579	0.021289	0.00714672	0.123318	0.0723634
chr17	78421018	78421117	6682731	0	+	0.282828	(0.28,0.32]	chr17	652840	12	EXON_MRNA	EXON_MRNA:INTRON	PGS1	ENSG00000087157.19	ENST00000262764.11:ENST00000589425.5:ENST00000589426.5:ENST00000588169.5:ENST00000588281.5:ENST00000591996.1:ENST00000586880.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	46	2	2.67453	3.86016	5.04579	0.021289	0.00714672	0.123318	0.0723634
chr2	144436405	144436505	1240960	0	-	0.3	(0.28,0.32]	chr2	131703	55	INTRON	INTRON	ZEB2	ENSG00000169554.23	ENST00000636471.1:ENST00000627532.3:ENST00000638128.1:ENST00000637304.1:ENST00000636179.1:ENST00000636820.1:ENST00000637045.1:ENST00000419938.5:ENST00000409487.7:ENST00000440875.6:ENST00000636732.2:ENST00000636026.2:ENST00000675069.1:ENST00000689298.1:ENST00000539609.7:ENST00000558170.6:ENST00000303660.8:ENST00000427902.5:ENST00000637267.2:ENST00000392861.6:ENST00000431672.4:ENST00000409211.5:ENST00000465308.5:ENST00000434448.5:ENST00000472146.5:ENST00000461784.3:ENST00000476394.5:ENST00000637591.2:ENST00000479735.1:ENST00000453352.5:ENST00000435831.5:ENST00000444559.5:ENST00000630572.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	46	2	2.67453	3.86016	5.04579	0.021289	0.00714672	0.123318	0.0723634
chr17	57274167	57274267	6632924	0	+	0.37	(0.35,0.378]	chr17	648003	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000581776.5:ENST00000581523.5:ENST00000674961.1:ENST00000582453.5:ENST00000675656.1:ENST00000322684.7:ENST00000579590.5:ENST00000579531.5:ENST00000676073.1:ENST00000675822.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	42	2	2.92952	3.8601550000000002	4.79079	0.00881187	0.00846427	0.084878	0.0776969
chr7	135944601	135944701	3649142	0	-	0.37	(0.35,0.378]	chr7	339202	142	INTRON	INTRON	MTPN	ENSG00000105887.11	ENST00000393085.4:ENST00000435723.1	protein_coding	protein_coding	protein_coding	protein_coding	1	42	2	2.92952	3.8601550000000002	4.79079	0.00881187	0.00846427	0.084878	0.0776969
chr8	126282494	126282594	4051457	0	-	0.36	(0.35,0.378]	chr8	369353	1691	INTRON	INTRON	LINC00861	ENSG00000245164.9	ENST00000651482.1	lncRNA	lncRNA	lncRNA	lncRNA	1	42	2	2.92952	3.8601550000000002	4.79079	0.00881187	0.00846427	0.084878	0.0776969
chr12	11033289	11033389	5268122	0	-	0.49	(0.476,0.515]	chr12	502233	20	INTRON	INTRON	ENSG00000275778:PRH1	ENSG00000275778.2:ENSG00000231887.8	ENST00000536668.2:ENST00000535024.6:ENST00000539853.5:ENST00000541977.5:ENST00000536086.2:ENST00000534923.1:ENST00000541456.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	41	2	2.56868	3.860055	5.15143	0.0256676	0.00166579	0.133676	0.0369207
chr10	17658564	17658664	4399410	0	+	0.46	(0.44,0.476]	chr10	406150	138	INTRON	INTRON	STAM	ENSG00000136738.15	ENST00000377524.8:ENST00000377500.1:ENST00000445846.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	54	2	2.69297	3.86	5.02703	0.00333494	0.00278015	0.0528877	0.0469265
chr5	10737150	10737249	2568086	0	-	0.474747	(0.44,0.476]	chr5	246128	25	INTRON	INTRON	DAP	ENSG00000112977.16	ENST00000230895.11:ENST00000432074.2:ENST00000514882.5:ENST00000508253.5:ENST00000510546.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	189	2	3.52568	3.8599550000000002	4.19423	1.56967e-5	6.71602e-7	0.00318411	4.53702e-4
chr6	154746214	154746314	3001945	0	+	0.37	(0.35,0.378]	chr6	280737	38	INTRON	INTRON	SCAF8	ENSG00000213079.10	ENST00000367186.7:ENST00000417268.3:ENST00000461219.5:ENST00000367178.8:ENST00000464628.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	78	2	2.18494	3.859825	5.53471	0.0047516	6.96925e-4	0.0635784	0.024224
chr4	105160786	105160886	2010691	0	+	0.59	(0.57,1]	chr4	200354	126	INTRON	INTRON	TET2	ENSG00000168769.14	ENST00000305737.6:ENST00000513237.5:ENST00000540549.5:ENST00000265149.9:ENST00000380013.9:ENST00000504042.5:ENST00000413648.2:ENST00000505801.1:ENST00000514870.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	27	2	3.22856	3.8598149999999998	4.49107	0.00220544	0.00205928	0.0420839	0.0417893
chr5	70945153	70945253	2383473	0	+	0.59	(0.57,1]	chr5	229823	4	SS5_PROX	SS5_PROX:INTRON	SMN1	ENSG00000172062.17	ENST00000503079.6:ENST00000514951.5:ENST00000506239.6:ENST00000380707.9:ENST00000506163.5:ENST00000351205.8:ENST00000625245.2:ENST00000518504.5:ENST00000507905.6:ENST00000513228.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	27	2	3.22856	3.8598149999999998	4.49107	0.00220544	0.00205928	0.0420839	0.0417893
chr1	160253307	160253406	571519	0	-	0.474747	(0.44,0.476]	chr1	69176	89	INTRON	INTRON	DCAF8	ENSG00000132716.19	ENST00000326837.6:ENST00000368073.7:ENST00000368074.6:ENST00000461888.5:ENST00000475733.5:ENST00000610139.5:ENST00000447377.5:ENST00000495887.1:ENST00000440682.5:ENST00000407642.6:ENST00000419626.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	40	2	2.9586	3.8596399999999997	4.76068	0.00758318	0.00653414	0.0773151	0.0699952
chrX	138891242	138891342	7900475	0	-	0.46	(0.44,0.476]	chrX	804239	262	INTRON	INTRON	FGF13	ENSG00000129682.16	ENST00000441825.8:ENST00000626909.2:ENST00000436198.5:ENST00000455663.5:ENST00000448673.1:ENST00000421460.1	protein_coding	protein_coding	protein_coding	protein_coding	1	40	2	2.9586	3.8596399999999997	4.76068	0.00758318	0.00653414	0.0773151	0.0699952
chr11	63898035	63898133	4801468	0	+	0.591837	(0.57,1]	chr11	445074	23	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	MARK2	ENSG00000072518.22	ENST00000377810.8:ENST00000361128.9:ENST00000508192.5:ENST00000350490.11:ENST00000402010.8:ENST00000502399.7:ENST00000425897.3:ENST00000679216.1:ENST00000513765.7:ENST00000543220.5:ENST00000540169.5:ENST00000677688.1:ENST00000509502.6:ENST00000408948.7:ENST00000679213.1:ENST00000676602.1:ENST00000678482.1:ENST00000678662.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	27	2	2.91889	3.8595	4.80011	0.00719009	6.07135e-4	0.0756118	0.0226059
chr14	91059119	91059219	5953887	0	-	0.62	(0.57,1]	chr14	565178	63	INTRON	INTRON	RPS6KA5	ENSG00000100784.12	ENST00000614987.5:ENST00000648062.1:ENST00000536315.6:ENST00000418736.6:ENST00000554206.1:ENST00000556594.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	27	2	2.91889	3.8595	4.80011	0.00719009	6.07135e-4	0.0756118	0.0226059
chr22	26550949	26551048	7564674	0	-	0.575758	(0.57,1]	chr22	774044	4	INTRON	INTRON	TPST2	ENSG00000128294.16	ENST00000338754.9:ENST00000403880.5:ENST00000398110.6:ENST00000442495.5:ENST00000440953.5:ENST00000453117.1:ENST00000450022.1	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	2.91889	3.8595	4.80011	0.00719009	6.07135e-4	0.0756118	0.0226059
chr9	137686832	137686931	4224164	0	+	0.575758	(0.57,1]	chr9	388206	11	INTRON	INTRON	EHMT1	ENSG00000181090.21	ENST00000462484.5:ENST00000371394.6:ENST00000630754.2:ENST00000460843.6:ENST00000626216.2:ENST00000629335.2:ENST00000637335.1:ENST00000636376.1:ENST00000637655.1:ENST00000636027.1:ENST00000492232.5:ENST00000460486.3:ENST00000636081.1:ENST00000637161.1:ENST00000629417.1:ENST00000637662.1:ENST00000636186.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	27	2	2.91889	3.8595	4.80011	0.00719009	6.07135e-4	0.0756118	0.0226059
chrX	72566112	72566210	7836247	0	-	0.469388	(0.44,0.476]	chrX	799363	31	INTRON	INTRON	HDAC8	ENSG00000147099.21	ENST00000373583.6:ENST00000373573.9:ENST00000648452.1:ENST00000649097.1:ENST00000647886.1:ENST00000648855.1:ENST00000647654.1:ENST00000648939.1:ENST00000648504.1:ENST00000648459.1:ENST00000373589.9:ENST00000650604.1:ENST00000647594.1:ENST00000647980.1:ENST00000647859.1:ENST00000648731.1:ENST00000649181.1:ENST00000649274.1:ENST00000650471.1:ENST00000647641.1:ENST00000649543.1:ENST00000373568.7:ENST00000648139.1:ENST00000648834.1:ENST00000648711.1:ENST00000436675.6:ENST00000647606.1:ENST00000415409.6:ENST00000478743.2:ENST00000648298.1:ENST00000648870.1:ENST00000649116.1:ENST00000649752.1:ENST00000647718.1:ENST00000649242.1:ENST00000649518.1:ENST00000648285.1:ENST00000412342.6:ENST00000373571.6:ENST00000439122.7:ENST00000648962.1:ENST00000650126.1:ENST00000648036.1:ENST00000647974.1:ENST00000373560.7:ENST00000373559.8:ENST00000648577.1:ENST00000421523.6:ENST00000648101.1:ENST00000650636.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	40	2	2.81896	3.8594800000000005	4.9	0.0120766	0.00423315	0.0962311	0.0572185
chr9	124648307	124648407	4347985	0	-	0.25	[0,0.28]	chr9	399255	526	INTRON	INTRON	NR6A1	ENSG00000148200.17	ENST00000487099.7:ENST00000373584.7:ENST00000416460.6:ENST00000344523.8	protein_coding	protein_coding	protein_coding	protein_coding	1	59	2	3.0836	3.8594150000000003	4.63523	0.0139836	0.00940284	0.10247	0.0817766
chr2	197993054	197993154	970987	0	+	0.4	(0.378,0.408]	chr2	104858	1824	INTRON	INTRON	PLCL1	ENSG00000115896.16	ENST00000428675.6:ENST00000435320.1:ENST00000487695.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	44	2	2.66785	3.85938	5.05091	0.0224639	0.00118558	0.11692	0.031662
chrX	24824250	24824349	7633031	0	+	0.40404	(0.378,0.408]	chrX	781771	23	INTRON	INTRON	POLA1	ENSG00000101868.13	ENST00000672178.1:ENST00000379068.8:ENST00000379059.7:ENST00000611764.2:ENST00000679301.1:ENST00000494204.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	44	2	2.66785	3.85938	5.05091	0.0224639	0.00118558	0.11692	0.031662
chr1	12587728	12587828	379240	0	-	0.34	(0.32,0.35]	chr1	44543	67	INTRON	INTRON	DHRS3	ENSG00000162496.9	ENST00000616661.5:ENST00000464917.5:ENST00000430996.2:ENST00000482265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	20	2	3.77344	3.859365	3.94529	0.0693433	0.0596635	0.189982	0.184298
chr1	23365374	23365471	399659	0	-	0.329897	(0.32,0.35]	chr1	47903	18	INTRON	INTRON	ZNF436	ENSG00000125945.15	ENST00000314011.9:ENST00000374608.3	protein_coding	protein_coding	protein_coding	protein_coding	0	20	2	3.77344	3.859365	3.94529	0.0693433	0.0596635	0.189982	0.184298
chr1	91781710	91781810	503570	0	-	0.35	(0.32,0.35]	chr1	59609	104	INTRON	INTRON	TGFBR3	ENSG00000069702.11	ENST00000212355.9:ENST00000533089.5:ENST00000370399.6:ENST00000525962.5:ENST00000532540.5:ENST00000465892.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	20	2	3.77344	3.859365	3.94529	0.0693433	0.0596635	0.189982	0.184298
chr1	117087022	117087120	197072	0	+	0.336735	(0.32,0.35]	chr1	21846	1	INTRON	INTRON	TTF2	ENSG00000116830.12	ENST00000369466.9	protein_coding	protein_coding	protein_coding	protein_coding	0	20	2	3.77344	3.859365	3.94529	0.0693433	0.0596635	0.189982	0.184298
chr10	38029482	38029582	4427086	0	+	0.35	(0.32,0.35]	chr10	408004	117	INTRON	INTRON	ZNF33A	ENSG00000189180.16	ENST00000307441.13:ENST00000374618.7:ENST00000628825.2:ENST00000458705.6:ENST00000432900.7:ENST00000469037.2:ENST00000478556.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	20	2	3.77344	3.859365	3.94529	0.0693433	0.0596635	0.189982	0.184298
chr10	50574567	50574666	4620196	0	-	0.343434	(0.32,0.35]	chr10	425452	543	INTRON	INTRON	SGMS1	ENSG00000198964.14	ENST00000429490.5:ENST00000361781.7:ENST00000619438.4:ENST00000609445.5:ENST00000608287.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	20	2	3.77344	3.859365	3.94529	0.0693433	0.0596635	0.189982	0.184298
chr10	68447106	68447203	4639517	0	-	0.329897	(0.32,0.35]	chr10	426704	3	INTRON	INTRON	DNA2	ENSG00000138346.15	ENST00000358410.8:ENST00000551118.6:ENST00000399179.6:ENST00000399180.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	20	2	3.77344	3.859365	3.94529	0.0693433	0.0596635	0.189982	0.184298
chr11	68078813	68078912	4972167	0	-	0.333333	(0.32,0.35]	chr11	469417	36	INTRON	INTRON	CHKA	ENSG00000110721.12	ENST00000265689.9:ENST00000356135.9:ENST00000533910.5:ENST00000528235.5:ENST00000531341.1:ENST00000530730.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	20	2	3.77344	3.859365	3.94529	0.0693433	0.0596635	0.189982	0.184298
chr12	19157540	19157640	5088549	0	+	0.34	(0.32,0.35]	chr12	480740	247	INTRON	INTRON	PLEKHA5	ENSG00000052126.15	ENST00000429027.7:ENST00000540972.5:ENST00000299275.10:ENST00000539256.5:ENST00000538714.5:ENST00000535357.5:ENST00000538034.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	20	2	3.77344	3.859365	3.94529	0.0693433	0.0596635	0.189982	0.184298
chr12	32732437	32732537	5110298	0	+	0.34	(0.32,0.35]	chr12	482516	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DNM1L	ENSG00000087470.19	ENST00000414834.6:ENST00000452533.6:ENST00000358214.9:ENST00000553257.6:ENST00000549701.6:ENST00000266481.10:ENST00000546649.5:ENST00000547312.5:ENST00000381000.8:ENST00000546757.5:ENST00000550093.5:ENST00000547078.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	20	2	3.77344	3.859365	3.94529	0.0693433	0.0596635	0.189982	0.184298
chr12	65176306	65176406	5157180	0	+	0.35	(0.32,0.35]	chr12	488236	45	INTRON	INTRON	LEMD3	ENSG00000174106.3	ENST00000308330.3:ENST00000541171.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	20	2	3.77344	3.859365	3.94529	0.0693433	0.0596635	0.189982	0.184298
chr12	105232790	105232890	5403841	0	-	0.34	(0.32,0.35]	chr12	515642	3	SS5_PROX	SS5_PROX:INTRON	APPL2	ENSG00000136044.12	ENST00000547439.5:ENST00000258530.8:ENST00000539978.6:ENST00000551662.5:ENST00000547809.5:ENST00000553097.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	20	2	3.77344	3.859365	3.94529	0.0693433	0.0596635	0.189982	0.184298
chr14	60953829	60953929	5738921	0	+	0.34	(0.32,0.35]	chr14	544921	736	INTRON	INTRON	MNAT1	ENSG00000020426.11	ENST00000261245.9:ENST00000539616.6:ENST00000554002.5:ENST00000557134.1	protein_coding	protein_coding	protein_coding	protein_coding	0	20	2	3.77344	3.859365	3.94529	0.0693433	0.0596635	0.189982	0.184298
chr14	75741488	75741588	5792482	0	+	0.33	(0.32,0.35]	chr14	548928	35	INTRON	INTRON	TTLL5	ENSG00000119685.20	ENST00000298832.14:ENST00000557636.5:ENST00000555422.5:ENST00000554148.5:ENST00000554878.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	20	2	3.77344	3.859365	3.94529	0.0693433	0.0596635	0.189982	0.184298
chr14	76189507	76189606	5796355	0	+	0.323232	(0.32,0.35]	chr14	549181	83	INTRON	INTRON	GPATCH2L	ENSG00000089916.18	ENST00000554375.5:ENST00000261530.12:ENST00000312858.9:ENST00000621494.1:ENST00000554799.1:ENST00000553588.1:ENST00000556675.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	20	2	3.77344	3.859365	3.94529	0.0693433	0.0596635	0.189982	0.184298
chr15	48340044	48340144	6018895	0	+	0.35	(0.32,0.35]	chr15	573631	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	DUT	ENSG00000128951.14	ENST00000559935.5:ENST00000559416.5:ENST00000558813.5:ENST00000331200.8:ENST00000558472.5:ENST00000558978.5:ENST00000455976.6:ENST00000559540.5:ENST00000558367.1:ENST00000561350.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	20	2	3.77344	3.859365	3.94529	0.0693433	0.0596635	0.189982	0.184298
chr15	57116860	57116960	6034101	0	+	0.35	(0.32,0.35]	chr15	574693	72	INTRON	INTRON	TCF12	ENSG00000140262.18	ENST00000438423.6:ENST00000267811.9:ENST00000333725.10:ENST00000560190.5:ENST00000559609.5:ENST00000557843.5:ENST00000557947.5:ENST00000561152.1:ENST00000561346.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	20	2	3.77344	3.859365	3.94529	0.0693433	0.0596635	0.189982	0.184298
chr15	65724433	65724531	6209104	0	-	0.326531	(0.32,0.35]	chr15	592551	11	INTRON	INTRON	DENND4A	ENSG00000174485.16	ENST00000443035.8:ENST00000431932.6:ENST00000635620.2:ENST00000564674.5:ENST00000568515.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	20	2	3.77344	3.859365	3.94529	0.0693433	0.0596635	0.189982	0.184298
chr16	56776280	56776379	6360356	0	+	0.323232	(0.32,0.35]	chr16	610460	173	INTRON	INTRON	NUP93	ENSG00000102900.13	ENST00000563858.5:ENST00000308159.10:ENST00000566315.5:ENST00000569842.5:ENST00000569863.5:ENST00000562496.5:ENST00000568656.5:ENST00000566678.1	protein_coding	protein_coding	protein_coding	protein_coding	0	20	2	3.77344	3.859365	3.94529	0.0693433	0.0596635	0.189982	0.184298
chr16	84135243	84135343	6532353	0	-	0.34	(0.32,0.35]	chr16	632977	3	SS5_PROX	SS5_PROX:INTRON	HSDL1	ENSG00000103160.12	ENST00000219439.9:ENST00000434463.7:ENST00000568857.5:ENST00000562224.1:ENST00000567294.5:ENST00000564998.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	20	2	3.77344	3.859365	3.94529	0.0693433	0.0596635	0.189982	0.184298
chr2	62806303	62806403	793307	0	+	0.34	(0.32,0.35]	chr2	88760	343	INTRON	INTRON	EHBP1	ENSG00000115504.15	ENST00000405015.7:ENST00000449820.5:ENST00000426940.5:ENST00000413434.5:ENST00000405482.5:ENST00000494958.1:ENST00000431489.6:ENST00000263991.9:ENST00000405289.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	20	2	3.77344	3.859365	3.94529	0.0693433	0.0596635	0.189982	0.184298
chr2	85016940	85017040	820722	0	+	0.35	(0.32,0.35]	chr2	91425	25	INTRON	INTRON	KCMF1	ENSG00000176407.18	ENST00000456682.1:ENST00000409785.9:ENST00000428691.5:ENST00000453448.1	protein_coding	protein_coding	protein_coding	protein_coding	0	20	2	3.77344	3.859365	3.94529	0.0693433	0.0596635	0.189982	0.184298
chr2	148715327	148715427	892461	0	+	0.35	(0.32,0.35]	chr2	98796	226	INTRON	INTRON	EPC2	ENSG00000135999.12	ENST00000457184.5:ENST00000258484.11:ENST00000397424.2	protein_coding	protein_coding	protein_coding	protein_coding	0	20	2	3.77344	3.859365	3.94529	0.0693433	0.0596635	0.189982	0.184298
chr20	45374193	45374293	7279737	0	+	0.34	(0.32,0.35]	chr20	740138	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	SYS1	ENSG00000204070.10	ENST00000426004.5	protein_coding	protein_coding	protein_coding	protein_coding	0	20	2	3.77344	3.859365	3.94529	0.0693433	0.0596635	0.189982	0.184298
chr21	21314399	21314499	7382160	0	+	0.35	(0.32,0.35]	chr21	752635	218	INTRON	INTRON	NCAM2	ENSG00000154654.15	ENST00000400546.6:ENST00000284894.8:ENST00000461281.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	20	2	3.77344	3.859365	3.94529	0.0693433	0.0596635	0.189982	0.184298
chr3	33628951	33629048	1653102	0	-	0.329897	(0.32,0.35]	chr3	169629	15	INTRON	INTRON	CLASP2	ENSG00000163539.18	ENST00000399362.8:ENST00000682230.1:ENST00000468888.6:ENST00000359576.9:ENST00000650653.1:ENST00000480013.6:ENST00000461133.8:ENST00000635664.1:ENST00000313350.10:ENST00000487200.5:ENST00000333778.10:ENST00000485378.6:ENST00000496954.2:ENST00000476433.5:ENST00000482896.5:ENST00000498331.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	20	2	3.77344	3.859365	3.94529	0.0693433	0.0596635	0.189982	0.184298
chr3	172136643	172136743	1560520	0	+	0.35	(0.32,0.35]	chr3	161547	27	INTRON	INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000421757.5:ENST00000469491.5:ENST00000336824.8:ENST00000423424.5:ENST00000416957.5:ENST00000478016.1:ENST00000443501.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	20	2	3.77344	3.859365	3.94529	0.0693433	0.0596635	0.189982	0.184298
chr4	7002249	7002349	1923560	0	+	0.33	(0.32,0.35]	chr4	193113	6	INTRON	INTRON	TBC1D14	ENSG00000132405.19	ENST00000448507.5:ENST00000409757.9:ENST00000410031.5:ENST00000451522.6:ENST00000446947.6:ENST00000439515.2	protein_coding	protein_coding	protein_coding	protein_coding	0	20	2	3.77344	3.859365	3.94529	0.0693433	0.0596635	0.189982	0.184298
chr4	32205478	32205578	1943509	0	+	0.35	(0.32,0.35]	chr4	194753	129	INTRON	INTRON	LINC02506	ENSG00000251129.3	ENST00000665582.2:ENST00000667252.2:ENST00000660373.2:ENST00000684849.1:ENST00000655951.1	lncRNA	lncRNA	lncRNA	lncRNA	0	20	2	3.77344	3.859365	3.94529	0.0693433	0.0596635	0.189982	0.184298
chr4	85582996	85583096	1989571	0	+	0.34	(0.32,0.35]	chr4	198930	119	INTRON	INTRON	ARHGAP24	ENSG00000138639.18	ENST00000395184.6:ENST00000503995.5:ENST00000506421.5:ENST00000509709.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	20	2	3.77344	3.859365	3.94529	0.0693433	0.0596635	0.189982	0.184298
chr4	152859012	152859112	2065922	0	+	0.35	(0.32,0.35]	chr4	204428	79	INTRON	INTRON	ARFIP1	ENSG00000164144.16	ENST00000451320.6:ENST00000429148.6:ENST00000353617.7:ENST00000405727.6:ENST00000356064.3:ENST00000511289.5:ENST00000513361.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	20	2	3.77344	3.859365	3.94529	0.0693433	0.0596635	0.189982	0.184298
chr6	2836840	2836930	3047249	0	-	0.344444	(0.32,0.35]	chr6	283480	2	INTRON	INTRON	SERPINB1	ENSG00000021355.13	ENST00000380739.6:ENST00000468511.5:ENST00000490094.5:ENST00000476896.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	20	2	3.77344	3.859365	3.94529	0.0693433	0.0596635	0.189982	0.184298
chr6	13949008	13949108	2822420	0	+	0.35	(0.32,0.35]	chr6	265130	233	INTRON	INTRON	RNF182	ENSG00000180537.13	ENST00000537663.5:ENST00000488763.5:ENST00000544682.5:ENST00000420478.2:ENST00000488300.6:ENST00000471906.1:ENST00000537388.1:ENST00000423553.6	protein_coding	protein_coding	protein_coding	protein_coding	0	20	2	3.77344	3.859365	3.94529	0.0693433	0.0596635	0.189982	0.184298
chr6	36080903	36081003	2853598	0	+	0.33	(0.32,0.35]	chr6	269663	39	INTRON	INTRON	MAPK14	ENSG00000112062.11	ENST00000229795.7:ENST00000468133.5:ENST00000229794.9:ENST00000310795.8:ENST00000491957.5:ENST00000496250.5:ENST00000474429.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	20	2	3.77344	3.859365	3.94529	0.0693433	0.0596635	0.189982	0.184298
chr6	108297478	108297578	2931817	0	+	0.35	(0.32,0.35]	chr6	276227	12	INTRON	INTRON	AFG1L	ENSG00000135537.17	ENST00000430458.1:ENST00000368977.9:ENST00000421954.5:ENST00000437715.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	20	2	3.77344	3.859365	3.94529	0.0693433	0.0596635	0.189982	0.184298
chr7	53688372	53688472	3533021	0	-	0.35	(0.32,0.35]	chr7	329558	306	INTRON	INTRON	LINC01446	ENSG00000205628.5	ENST00000670902.1:ENST00000380970.2:ENST00000663138.2:ENST00000660945.1:ENST00000662931.1:ENST00000651244.1:ENST00000661502.1:ENST00000670945.1	lncRNA	lncRNA	lncRNA	lncRNA	0	20	2	3.77344	3.859365	3.94529	0.0693433	0.0596635	0.189982	0.184298
chr7	107459024	107459124	3611975	0	-	0.34	(0.32,0.35]	chr7	336694	460	INTRON	INTRON	COG5	ENSG00000164597.15	ENST00000297135.9:ENST00000347053.8:ENST00000393603.7:ENST00000484237.5:ENST00000475638.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	20	2	3.77344	3.859365	3.94529	0.0693433	0.0596635	0.189982	0.184298
chr7	111331183	111331283	3621794	0	-	0.34	(0.32,0.35]	chr7	337093	3673	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	20	2	3.77344	3.859365	3.94529	0.0693433	0.0596635	0.189982	0.184298
chr7	111522646	111522746	3623717	0	-	0.34	(0.32,0.35]	chr7	337127	8	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000452895.5:ENST00000447215.5:ENST00000492938.1:ENST00000452753.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	20	2	3.77344	3.859365	3.94529	0.0693433	0.0596635	0.189982	0.184298
chr7	118184475	118184572	3393149	0	+	0.329897	(0.32,0.35]	chr7	317576	3	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	LSM8	ENSG00000128534.8	ENST00000424702.1:ENST00000422760.1:ENST00000249299.7:ENST00000411938.1	protein_coding	protein_coding	protein_coding	protein_coding	0	20	2	3.77344	3.859365	3.94529	0.0693433	0.0596635	0.189982	0.184298
chr7	135579115	135579215	3428536	0	+	0.33	(0.32,0.35]	chr7	319656	2	SS5_PROX	SS5_PROX:INTRON	NUP205	ENSG00000155561.15	ENST00000285968.11	protein_coding	protein_coding	protein_coding	protein_coding	0	20	2	3.77344	3.859365	3.94529	0.0693433	0.0596635	0.189982	0.184298
chr9	34004048	34004148	4245396	0	-	0.33	(0.32,0.35]	chr9	390473	48	INTRON	INTRON	UBAP2	ENSG00000137073.24	ENST00000379238.7:ENST00000683659.1:ENST00000682239.1:ENST00000683140.1:ENST00000682209.1:ENST00000681980.1:ENST00000360802.6:ENST00000683252.1:ENST00000684158.1:ENST00000682914.1:ENST00000683717.1:ENST00000379239.9:ENST00000683084.1:ENST00000684754.1:ENST00000629575.2:ENST00000684298.1:ENST00000412543.6:ENST00000480885.5:ENST00000459988.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	20	2	3.77344	3.859365	3.94529	0.0693433	0.0596635	0.189982	0.184298
chr9	34006241	34006341	4245418	0	-	0.33	(0.32,0.35]	chr9	390473	70	INTRON	INTRON	UBAP2	ENSG00000137073.24	ENST00000379238.7:ENST00000683659.1:ENST00000682239.1:ENST00000683140.1:ENST00000682209.1:ENST00000681980.1:ENST00000360802.6:ENST00000683252.1:ENST00000684158.1:ENST00000682914.1:ENST00000683717.1:ENST00000379239.9:ENST00000683084.1:ENST00000684754.1:ENST00000629575.2:ENST00000684298.1:ENST00000412543.6:ENST00000480885.5:ENST00000459988.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	20	2	3.77344	3.859365	3.94529	0.0693433	0.0596635	0.189982	0.184298
chr6	157907592	157907691	3016614	0	+	0.474747	(0.44,0.476]	chr6	281403	15	EXON_MRNA	EXON_MRNA:INTRON	SNX9	ENSG00000130340.17	ENST00000680863.1:ENST00000679814.1:ENST00000680464.1:ENST00000681186.1:ENST00000679732.1:ENST00000681183.1:ENST00000681534.1:ENST00000681651.1:ENST00000680089.1:ENST00000680078.1:ENST00000680974.1:ENST00000680095.1:ENST00000680015.1:ENST00000681138.1:ENST00000392185.8:ENST00000679790.1:ENST00000680495.1:ENST00000679691.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	88	2	3.68473	3.85929	4.03385	5.47507e-4	6.14604e-5	0.0215463	0.0064891
chr2	171088426	171088526	1263372	0	-	0.33	(0.32,0.35]	chr2	133909	52	INTRON	INTRON	TLK1	ENSG00000198586.14	ENST00000431350.7:ENST00000360843.7:ENST00000359766.7:ENST00000521943.5:ENST00000409443.6:ENST00000413010.5:ENST00000486857.5:ENST00000470340.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	44	2	3.0247	3.8592500000000003	4.6938	0.0137794	0.00671684	0.0949306	0.0738715
chr18	31902315	31902414	6960981	0	-	0.434343	(0.408,0.44]	chr18	688740	9	INTRON	INTRON	TRAPPC8	ENSG00000153339.15	ENST00000283351.10:ENST00000580104.5:ENST00000582539.5:ENST00000582513.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	59	2	2.53313	3.859245	5.18536	0.00739595	6.17381e-4	0.074277	0.0223951
chr6	25998795	25998895	2836943	0	+	0.5	(0.476,0.515]	chr6	265987	10	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	ENSG00000272462	ENSG00000272462.4	ENST00000658335.1:ENST00000658630.1:ENST00000606723.2:ENST00000653223.2:ENST00000656572.1:ENST00000670129.1:ENST00000656696.1:ENST00000658377.1:ENST00000660716.1:ENST00000666742.1	lncRNA	lncRNA	lncRNA	lncRNA	1	40	2	2.87879	3.859205	4.83962	0.00999149	0.00480934	0.0879541	0.0602209
chr7	64314653	64314752	3319446	0	+	0.515152	(0.476,0.515]	chr7	308626	1	INTRON	INTRON	ZNF736	ENSG00000234444.10	ENST00000438373.5:ENST00000355095.8:ENST00000423484.3:ENST00000488621.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	40	2	2.87879	3.859205	4.83962	0.00999149	0.00480934	0.0879541	0.0602209
chr17	59911500	59911598	6643949	0	+	0.418367	(0.408,0.44]	chr17	648809	5	INTRON	INTRON	RPS6KB1	ENSG00000108443.14	ENST00000393021.7:ENST00000472940.5:ENST00000225577.9:ENST00000477179.5:ENST00000443572.6:ENST00000489824.1:ENST00000406116.7:ENST00000592726.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	55	2	2.82511	3.85919	4.89327	0.00458906	0.00189528	0.0595107	0.0402736
chr15	61853569	61853668	6196029	0	-	0.333333	(0.32,0.35]	chr15	590477	13	UTR3	UTR3:EXON_MRNA	VPS13C	ENSG00000129003.19	ENST00000249837.7:ENST00000644861.2:ENST00000560637.5:ENST00000650094.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	78	2	1.77409	3.8589700000000002	5.94385	0.0414296	3.75519e-5	0.146067	0.00490694
chr11	62804904	62805002	4961447	0	-	0.510204	(0.476,0.515]	chr11	466959	3	SS5_PROX	SS5_PROX:INTRON	NXF1	ENSG00000162231.14	ENST00000531709.6:ENST00000294172.7:ENST00000532297.5:ENST00000530875.5:ENST00000531579.5:ENST00000526163.5:ENST00000531131.1:ENST00000533671.1:ENST00000525576.1:ENST00000527064.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	44	2	3.10264	3.858915	4.61519	0.00543163	0.00528365	0.0656295	0.0645052
chr2	10401890	10401989	692624	0	+	0.50505	(0.476,0.515]	chr2	81151	46	INTRON	INTRON	HPCAL1	ENSG00000115756.13	ENST00000423674.5:ENST00000307845.8:ENST00000381765.7:ENST00000419810.6:ENST00000622018.4:ENST00000613496.4:ENST00000620771.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	44	2	3.10264	3.858915	4.61519	0.00543163	0.00528365	0.0656295	0.0645052
chr3	33802627	33802727	1394419	0	+	0.5	(0.476,0.515]	chr3	146021	27	INTRON	INTRON	PDCD6IP	ENSG00000170248.15	ENST00000457054.6:ENST00000648706.1:ENST00000435909.5:ENST00000430877.5:ENST00000413073.1:ENST00000307296.8:ENST00000477798.5:ENST00000498147.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	44	2	3.10264	3.858915	4.61519	0.00543163	0.00528365	0.0656295	0.0645052
chr8	144304624	144304724	3881655	0	+	0.43	(0.408,0.44]	chr8	356871	107	INTRON	INTRON	HSF1	ENSG00000185122.11	ENST00000400780.8:ENST00000528838.6:ENST00000528988.1:ENST00000533240.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	43	2	2.6542	3.858815	5.06343	0.0227514	0.00101725	0.117618	0.0293497
chr10	5689840	5689939	4384391	0	+	0.323232	(0.32,0.35]	chr10	404456	43	INTRON	INTRON	TASOR2	ENSG00000108021.21	ENST00000695832.1:ENST00000328090.9:ENST00000695737.1:ENST00000695833.1:ENST00000695834.1:ENST00000695835.1:ENST00000695836.1:ENST00000473789.5:ENST00000477043.5:ENST00000496681.5:ENST00000480839.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	44	2	2.64129	3.85879	5.07629	0.0222819	0.00468114	0.124303	0.0600108
chr12	132993752	132993852	5252168	0	+	0.33	(0.32,0.35]	chr12	499627	56	INTRON	INTRON	ZNF26	ENSG00000198393.8	ENST00000537956.1:ENST00000328654.10:ENST00000545101.1:ENST00000540238.5:ENST00000544181.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	44	2	2.64129	3.85879	5.07629	0.0222819	0.00468114	0.124303	0.0600108
chr16	81459515	81459615	6405144	0	+	0.35	(0.32,0.35]	chr16	615026	136	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8	protein_coding	protein_coding	protein_coding	protein_coding	1	44	2	2.64129	3.85879	5.07629	0.0222819	0.00468114	0.124303	0.0600108
chr8	123345985	123346085	4042111	0	-	0.34	(0.32,0.35]	chr8	368694	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ATAD2	ENSG00000156802.13	ENST00000287394.10:ENST00000517666.5:ENST00000521903.5:ENST00000519124.5:ENST00000521496.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	44	2	2.64129	3.85879	5.07629	0.0222819	0.00468114	0.124303	0.0600108
chr10	27149340	27149440	4586241	0	-	0.41	(0.408,0.44]	chr10	422780	3	SS3_PROX	SS3_PROX:INTRON	YME1L1	ENSG00000136758.20	ENST00000376016.8:ENST00000613434.4:ENST00000326799.7:ENST00000491542.6:ENST00000427324.5:ENST00000396296.7:ENST00000477432.1	protein_coding	protein_coding	protein_coding	protein_coding	1	43	2	2.71911	3.85874	4.99837	0.0189489	0.00131369	0.108861	0.0333932
chr11	43324332	43324431	4776327	0	+	0.414141	(0.408,0.44]	chr11	441617	3	INTRON	INTRON	API5	ENSG00000166181.13	ENST00000534695.5:ENST00000455725.6:ENST00000531273.6:ENST00000420461.6:ENST00000378852.7:ENST00000534600.5:ENST00000526394.1	protein_coding	protein_coding	protein_coding	protein_coding	1	43	2	2.71911	3.85874	4.99837	0.0189489	0.00131369	0.108861	0.0333932
chr7	66751689	66751789	3325585	0	+	0.38	(0.378,0.408]	chr7	309233	105	INTRON	INTRON	RABGEF1	ENSG00000154710.18	ENST00000607882.5:ENST00000284957.9:ENST00000450873.6:ENST00000442563.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	41	2	3.05393	3.8586549999999997	4.66338	0.0103469	0.00551532	0.0850389	0.0672816
chr8	55895585	55895685	3754492	0	+	0.4	(0.378,0.408]	chr8	349249	151	INTRON	INTRON	LYN	ENSG00000254087.8	ENST00000519728.6:ENST00000520220.6	protein_coding	protein_coding	protein_coding	protein_coding	1	41	2	3.05393	3.8586549999999997	4.66338	0.0103469	0.00551532	0.0850389	0.0672816
chr4	110193449	110193549	2227683	0	-	0.51	(0.476,0.515]	chr4	218024	875	INTRON	INTRON	ELOVL6	ENSG00000170522.10	ENST00000394607.7:ENST00000302274.8:ENST00000514184.5:ENST00000506625.5:ENST00000506461.1:ENST00000503885.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	55	2	2.13304	3.858645	5.58425	0.024866	2.97744e-4	0.132101	0.0160246
chr1	155514827	155514927	562412	0	-	0.43	(0.408,0.44]	chr1	67101	320	INTRON	INTRON	ASH1L	ENSG00000116539.14	ENST00000676814.1:ENST00000392403.8:ENST00000368346.7:ENST00000677213.1:ENST00000678117.1:ENST00000679097.1:ENST00000679333.1:ENST00000677042.1:ENST00000678699.1:ENST00000677825.1:ENST00000679133.1:ENST00000548830.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	40	2	2.89193	3.8586150000000004	4.8253	0.00950364	0.0056738	0.0863579	0.0653997
chr17	60630427	60630527	6644778	0	+	0.41	(0.408,0.44]	chr17	648939	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	PPM1D	ENSG00000170836.13	ENST00000305921.8:ENST00000693102.1:ENST00000685212.1:ENST00000693196.1:ENST00000392995.7:ENST00000688505.1:ENST00000629650.3:ENST00000687355.1:ENST00000686064.1:ENST00000689445.1:ENST00000590418.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	40	2	2.89193	3.8586150000000004	4.8253	0.00950364	0.0056738	0.0863579	0.0653997
chr19	9829171	9829270	7011920	0	+	0.424242	(0.408,0.44]	chr19	696352	4	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	UBL5	ENSG00000198258.11	ENST00000358666.7:ENST00000590068.1:ENST00000589960.5:ENST00000593087.1:ENST00000586895.6:ENST00000589372.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	40	2	2.89193	3.8586150000000004	4.8253	0.00950364	0.0056738	0.0863579	0.0653997
chr22	17599249	17599341	7547519	0	-	0.423913	(0.408,0.44]	chr22	771429	6	INTRON	INTRON	ATP6V1E1	ENSG00000131100.13	ENST00000253413.10:ENST00000399796.6:ENST00000399798.6:ENST00000413576.1:ENST00000481365.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	40	2	2.89193	3.8586150000000004	4.8253	0.00950364	0.0056738	0.0863579	0.0653997
chrX	120443651	120443749	7876230	0	-	0.428571	(0.408,0.44]	chrX	802113	6	INTRON	INTRON	LAMP2	ENSG00000005893.16	ENST00000200639.9:ENST00000434600.6:ENST00000486593.5:ENST00000371335.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	40	2	2.89193	3.8586150000000004	4.8253	0.00950364	0.0056738	0.0863579	0.0653997
chr2	96300597	96300697	1180490	0	-	0.57	(0.515,0.57]	chr2	126352	2	SS5_PROX	SS5_PROX:INTRON	SNRNP200	ENSG00000144028.15	ENST00000323853.10:ENST00000652267.1	protein_coding	protein_coding	protein_coding	protein_coding	2	53	2	2.7208	3.858575	4.99635	0.00306828	8.06602e-4	0.0494933	0.0258804
chr2	135525614	135525713	1233447	0	-	0.525253	(0.515,0.57]	chr2	131245	208	INTRON	INTRON	ZRANB3	ENSG00000121988.18	ENST00000264159.11:ENST00000401392.5:ENST00000536680.5:ENST00000403017.2:ENST00000452187.6:ENST00000492193.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	39	2	2.52504	3.8585599999999998	5.19208	0.029342	3.4344e-4	0.128055	0.0164987
chr6	111266357	111266452	2939849	0	+	0.526316	(0.515,0.57]	chr6	276921	5	CDS	CDS:UTR3:EXON_MRNA	MFSD4B	ENSG00000173214.7	ENST00000672303.1:ENST00000671876.2:ENST00000672750.1:ENST00000672191.1:ENST00000368847.5:ENST00000672554.1:ENST00000673024.1:ENST00000671883.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	39	2	2.52504	3.8585599999999998	5.19208	0.029342	3.4344e-4	0.128055	0.0164987
chrX	44922584	44922684	7649096	0	+	0.54	(0.515,0.57]	chrX	782726	482	INTRON	INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000675440.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000621147.5:ENST00000475233.1:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	39	2	2.52504	3.8585599999999998	5.19208	0.029342	3.4344e-4	0.128055	0.0164987
chr12	45905867	45905966	5124503	0	+	0.252525	[0,0.28]	chr12	483408	9	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ARID2	ENSG00000189079.17	ENST00000334344.11:ENST00000479608.5:ENST00000444670.5:ENST00000457135.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	103	2	1.70895	3.85851	6.00807	0.0229749	6.0063e-4	0.126178	0.0226059
chr3	16313169	16313269	1375367	0	+	0.46	(0.44,0.476]	chr3	145005	72	INTRON	INTRON	OXNAD1	ENSG00000154814.14	ENST00000605932.5:ENST00000435829.6:ENST00000606098.1	protein_coding	protein_coding	protein_coding	protein_coding	3	120	2	3.56198	3.85847	4.15496	7.05839e-5	3.09831e-5	0.0075214	0.00443703
chr1	235276143	235276243	663342	0	-	0.24	[0,0.28]	chr1	78552	150	INTRON	INTRON	ARID4B	ENSG00000054267.22	ENST00000349213.7:ENST00000366603.6:ENST00000264183.9:ENST00000421364.5:ENST00000491632.5:ENST00000418304.1:ENST00000466653.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	51	2	3.09587	3.8583550000000004	4.62084	0.0313633	0.00651565	0.13151	0.0735232
chr6	53094941	53095012	2877860	0	+	0.267606	[0,0.28]	chr6	273173	1	SS5_PROX	SS5_PROX:INTRON	FBXO9	ENSG00000112146.17	ENST00000370939.7:ENST00000323557.12:ENST00000244426.10:ENST00000474457.1:ENST00000484436.7:ENST00000473318.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	51	2	3.09587	3.8583550000000004	4.62084	0.0313633	0.00651565	0.13151	0.0735232
chr17	82558740	82558839	6692995	0	+	0.515152	(0.476,0.515]	chr17	654627	381	INTRON	INTRON	FOXK2	ENSG00000141568.21	ENST00000473637.6:ENST00000335255.10:ENST00000527313.6:ENST00000570585.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	79	2	1.71266	3.8583350000000003	6.00401	0.0293304	1.13973e-5	0.128055	0.00249332
chr15	63613921	63614017	6198597	0	-	0.395833	(0.378,0.408]	chr15	591000	10	INTRON	INTRON	HERC1	ENSG00000103657.14	ENST00000443617.7	protein_coding	protein_coding	protein_coding	protein_coding	1	41	2	2.71183	3.85821	5.00459	0.0170789	0.00371142	0.110899	0.0535094
chr2	170053461	170053561	910444	0	+	0.38	(0.378,0.408]	chr2	100424	121	INTRON	INTRON	UBR3	ENSG00000144357.18	ENST00000272793.11:ENST00000430321.5:ENST00000392632.6:ENST00000439681.1:ENST00000444475.5:ENST00000474426.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	41	2	2.71183	3.85821	5.00459	0.0170789	0.00371142	0.110899	0.0535094
chr11	78137945	78138045	4998328	0	-	0.4	(0.378,0.408]	chr11	472392	3	SS3_PROX	SS3_PROX:INTRON	ALG8	ENSG00000159063.14	ENST00000679559.1:ENST00000680398.1:ENST00000681221.1:ENST00000527099.2:ENST00000681489.1:ENST00000525783.6:ENST00000529139.6:ENST00000680761.1:ENST00000525870.6:ENST00000680866.1:ENST00000680223.1:ENST00000526737.6:ENST00000681575.1:ENST00000299626.10:ENST00000680467.1:ENST00000679497.1:ENST00000681351.1:ENST00000679697.1:ENST00000680580.1:ENST00000526849.6:ENST00000680256.1:ENST00000680797.1:ENST00000681723.1:ENST00000680142.1:ENST00000679685.1:ENST00000681384.1:ENST00000679874.1:ENST00000679444.1:ENST00000680459.1:ENST00000681699.1:ENST00000679986.1:ENST00000680063.1:ENST00000530608.6:ENST00000681765.1:ENST00000681225.1:ENST00000681417.1:ENST00000530910.6:ENST00000680329.1:ENST00000376156.7:ENST00000679648.1:ENST00000680101.1:ENST00000680829.1:ENST00000525761.3:ENST00000532440.6:ENST00000680996.1:ENST00000532306.6:ENST00000680399.1:ENST00000679539.1:ENST00000615266.5:ENST00000681957.1:ENST00000532552.2:ENST00000680643.1:ENST00000530454.6:ENST00000525755.6:ENST00000532050.5:ENST00000526928.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	44	2	2.60296	3.8580550000000002	5.11315	0.0267851	9.26795e-4	0.123349	0.0278442
chr7	118184572	118184670	3393150	0	+	0.387755	(0.378,0.408]	chr7	317576	4	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	LSM8	ENSG00000128534.8	ENST00000424702.1:ENST00000422760.1:ENST00000249299.7:ENST00000411938.1	protein_coding	protein_coding	protein_coding	protein_coding	1	44	2	2.60296	3.8580550000000002	5.11315	0.0267851	9.26795e-4	0.123349	0.0278442
chr1	227191188	227191288	650442	0	-	0.54	(0.515,0.57]	chr1	77078	302	INTRON	INTRON	CDC42BPA	ENSG00000143776.20	ENST00000366766.8:ENST00000366769.7:ENST00000334218.9:ENST00000366767.7:ENST00000366764.8	protein_coding	protein_coding	protein_coding	protein_coding	1	39	2	3.03037	3.8580249999999996	4.68568	0.00608732	0.00270027	0.0676501	0.0479115
chr1	8395449	8395548	369535	0	-	0.383838	(0.378,0.408]	chr1	43438	291	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000377464.5:ENST00000400907.6:ENST00000476556.5:ENST00000656437.1:ENST00000488215.5:ENST00000460659.5:ENST00000492766.5:ENST00000465125.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	44	2	2.72993	3.8579	4.98587	0.0188736	0.00152268	0.108861	0.0360297
chr6	126003474	126003573	2956232	0	+	0.40404	(0.378,0.408]	chr6	278005	35	INTRON	INTRON	TRMT11	ENSG00000066651.20	ENST00000479748.5:ENST00000368332.7:ENST00000461129.5:ENST00000648977.1:ENST00000468097.5:ENST00000334379.11	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	44	2	2.72993	3.8579	4.98587	0.0188736	0.00152268	0.108861	0.0360297
chr7	129230837	129230937	3409530	0	+	0.39	(0.378,0.408]	chr7	318776	50	INTRON	INTRON	AHCYL2	ENSG00000158467.17	ENST00000325006.8:ENST00000446544.6	protein_coding	protein_coding	protein_coding	protein_coding	1	44	2	2.72993	3.8579	4.98587	0.0188736	0.00152268	0.108861	0.0360297
chr9	137744290	137744390	4224752	0	+	0.38	(0.378,0.408]	chr9	388253	2	SS5_PROX	SS5_PROX:INTRON	EHMT1	ENSG00000181090.21	ENST00000462484.5:ENST00000371394.6:ENST00000460843.6:ENST00000629335.2:ENST00000636027.1:ENST00000637161.1:ENST00000637261.1:ENST00000637977.1:ENST00000626066.2:ENST00000638071.1:ENST00000495657.5:ENST00000637318.1:ENST00000478940.1:ENST00000640639.1:ENST00000629808.2:ENST00000462942.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	44	2	2.72993	3.8579	4.98587	0.0188736	0.00152268	0.108861	0.0360297
chr4	17999454	17999554	2118076	0	-	0.38	(0.378,0.408]	chr4	209157	262	INTRON	INTRON	LCORL	ENSG00000178177.17	ENST00000635767.2:ENST00000326877.8:ENST00000675131.1:ENST00000675143.1:ENST00000637787.1:ENST00000675605.1:ENST00000510451.5:ENST00000675927.1:ENST00000382224.5:ENST00000382226.5:ENST00000676061.1:ENST00000674942.1:ENST00000512376.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	75	2	2.12071	3.857765	5.59482	0.00601933	4.23783e-4	0.0700813	0.0189958
chr3	37252582	37252681	1395847	0	+	0.323232	(0.32,0.35]	chr3	146319	7	INTRON	INTRON	GOLGA4	ENSG00000144674.17	ENST00000435830.6:ENST00000444882.5:ENST00000356847.8:ENST00000450863.6:ENST00000361924.7:ENST00000429018.5:ENST00000431105.1:ENST00000419177.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	426	2	3.69089	3.8577250000000003	4.02456	3.76295e-6	1.23214e-8	0.00139567	3.82946e-5
chr7	105304642	105304742	3603062	0	-	0.35	(0.32,0.35]	chr7	336154	60	INTRON	INTRON	SRPK2	ENSG00000135250.17	ENST00000393651.8:ENST00000482897.5:ENST00000460391.5:ENST00000462282.5:ENST00000465112.5:ENST00000482862.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	48	2	2.37794	3.8576949999999997	5.33745	0.0498601	6.1485e-4	0.156383	0.0223951
chr1	247161664	247161764	683771	0	-	0.26	[0,0.28]	chr1	80174	14	INTRON	INTRON	ZNF124	ENSG00000196418.13	ENST00000472531.5:ENST00000491356.5:ENST00000543802.3:ENST00000340684.10:ENST00000491848.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	51	2	2.36637	3.857635	5.3489	0.0500615	0.00514751	0.17488	0.062965
chr19	32702917	32703016	7049786	0	+	0.272727	[0,0.28]	chr19	702960	99	INTRON	INTRON	NUDT19	ENSG00000213965.4	ENST00000397061.4	protein_coding	protein_coding	protein_coding	protein_coding	1	51	2	2.36637	3.857635	5.3489	0.0500615	0.00514751	0.17488	0.062965
chr12	132797839	132797939	5449898	0	-	0.51	(0.476,0.515]	chr12	522056	1	SS5_PROX	SS5_PROX:INTRON	GOLGA3	ENSG00000090615.16	ENST00000204726.9:ENST00000450791.8:ENST00000693666.1:ENST00000688114.1:ENST00000687190.1:ENST00000690511.1:ENST00000685283.1:ENST00000691696.1:ENST00000691636.1:ENST00000690897.1:ENST00000690465.1:ENST00000456883.7:ENST00000692253.1:ENST00000687502.1:ENST00000688772.1:ENST00000687479.1:ENST00000690709.1:ENST00000545875.4:ENST00000688251.1:ENST00000690573.1:ENST00000685195.1:ENST00000686425.1:ENST00000693437.1:ENST00000692831.1:ENST00000688068.1:ENST00000692951.1:ENST00000689441.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	40	2	2.94692	3.857595	4.76827	0.00794331	0.00600704	0.0797304	0.0674604
chr17	62484303	62484403	6652933	0	+	0.5	(0.476,0.515]	chr17	649301	27	INTRON	INTRON	TLK2	ENSG00000146872.19	ENST00000582809.5:ENST00000684213.1:ENST00000583843.5:ENST00000579450.5:ENST00000577616.1:ENST00000582195.6:ENST00000682085.1:ENST00000580705.5:ENST00000346027.10:ENST00000326270.13:ENST00000682203.1:ENST00000343388.11:ENST00000683536.1:ENST00000684440.1:ENST00000684772.1:ENST00000682274.1:ENST00000682827.1:ENST00000583690.6:ENST00000682075.1:ENST00000683104.1:ENST00000684012.1:ENST00000581041.5:ENST00000684553.1:ENST00000683737.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	40	2	2.94692	3.857595	4.76827	0.00794331	0.00600704	0.0797304	0.0674604
chr17	75143874	75143973	6835973	0	-	0.50505	(0.476,0.515]	chr17	675456	73	INTRON	INTRON	JPT1	ENSG00000189159.16	ENST00000409753.8:ENST00000476258.5:ENST00000482348.5:ENST00000304834.11:ENST00000356033.8:ENST00000470924.5:ENST00000481094.1:ENST00000481647.5:ENST00000580380.1:ENST00000581874.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	40	2	2.94692	3.857595	4.76827	0.00794331	0.00600704	0.0797304	0.0674604
chr6	135182927	135183026	2962160	0	+	0.494949	(0.476,0.515]	chr6	278557	10	INTRON	INTRON	MYB	ENSG00000118513.20	ENST00000341911.10:ENST00000442647.7:ENST00000316528.12:ENST00000616088.4:ENST00000339290.9:ENST00000367812.6:ENST00000463282.6:ENST00000525477.5:ENST00000533837.5:ENST00000367814.8:ENST00000527615.5:ENST00000420123.6:ENST00000525369.5:ENST00000438901.6:ENST00000525514.5:ENST00000526320.5:ENST00000526889.5:ENST00000529586.5:ENST00000531519.5:ENST00000533808.5:ENST00000528343.5:ENST00000524588.5:ENST00000525002.5:ENST00000525940.5:ENST00000526187.5:ENST00000526565.5:ENST00000528015.5:ENST00000528140.5:ENST00000528345.5:ENST00000528774.5:ENST00000529262.5:ENST00000531634.5:ENST00000531737.5:ENST00000533384.5:ENST00000533624.5:ENST00000534044.5:ENST00000534121.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	40	2	2.94692	3.857595	4.76827	0.00794331	0.00600704	0.0797304	0.0674604
chr4	70912243	70912343	1970604	0	+	0.36	(0.35,0.378]	chr4	197571	93	INTRON	INTRON	MOB1B	ENSG00000173542.9	ENST00000502869.5:ENST00000509041.5:ENST00000309395.7:ENST00000396051.2:ENST00000511449.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	46	2	2.39939	3.857475	5.31556	0.0458078	4.97087e-4	0.149888	0.0201536
chr7	91966182	91966281	3351267	0	+	0.373737	(0.35,0.378]	chr7	312180	247	INTRON	INTRON	AKAP9	ENSG00000127914.19	ENST00000680534.1:ENST00000680513.1:ENST00000680072.1:ENST00000679821.1:ENST00000679554.1:ENST00000356239.8:ENST00000679521.1:ENST00000680181.1:ENST00000681722.1:ENST00000680766.1:ENST00000679448.1:ENST00000681412.1:ENST00000680047.1:ENST00000679474.1:ENST00000680952.1:ENST00000679457.1:ENST00000679722.1:ENST00000680074.1:ENST00000493453.1:ENST00000394564.5:ENST00000674381.2:ENST00000359028.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	46	2	2.39939	3.857475	5.31556	0.0458078	4.97087e-4	0.149888	0.0201536
chrX	24726444	24726542	7632021	0	+	0.357143	(0.35,0.378]	chrX	781649	5	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	POLA1	ENSG00000101868.13	ENST00000672178.1:ENST00000379068.8:ENST00000677890.1:ENST00000379059.7:ENST00000611764.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	46	2	2.39939	3.857475	5.31556	0.0458078	4.97087e-4	0.149888	0.0201536
chr3	17691904	17692004	1629925	0	-	0.31	(0.28,0.32]	chr3	168267	194	INTRON	INTRON	TBC1D5	ENSG00000131374.15	ENST00000253692.11:ENST00000696125.1:ENST00000414318.2:ENST00000429383.8:ENST00000446818.6:ENST00000415814.6:ENST00000452492.6:ENST00000412981.5:ENST00000428355.5:ENST00000425944.5:ENST00000430169.5:ENST00000445294.5:ENST00000414349.5:ENST00000443499.6:ENST00000444756.5:ENST00000497531.5:ENST00000443386.5:ENST00000507877.5:ENST00000446863.5:ENST00000444471.5:ENST00000433533.5:ENST00000481396.5:ENST00000480435.5:ENST00000423331.6:ENST00000485432.1:ENST00000471679.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	68	2	2.18092	3.85747	5.53402	0.0271832	4.0843e-4	0.123904	0.0181306
chr1	220129032	220129131	319137	0	+	0.50505	(0.476,0.515]	chr1	36543	18	INTRON	INTRON	IARS2	ENSG00000067704.10	ENST00000366922.3:ENST00000490891.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	40	2	2.80729	3.85745	4.90761	0.0126008	0.00386428	0.0980703	0.0542786
chr16	21420643	21420738	6460515	0	-	0.473684	(0.44,0.476]	chr16	623198	5	INTRON	INTRON	NPIPB3	ENSG00000169246.16	ENST00000504841.6:ENST00000419180.6:ENST00000519305.6:ENST00000521589.5:ENST00000534903.1:ENST00000538439.1:ENST00000545358.5:ENST00000535190.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	117	2	3.65423	3.85723	4.06023	9.08057e-5	2.41976e-5	0.00848604	0.00385018
chr1	39880479	39880578	428243	0	-	0.575758	(0.57,1]	chr1	52034	40	INTRON	INTRON	TRIT1	ENSG00000043514.17	ENST00000316891.10:ENST00000648678.1:ENST00000537440.5:ENST00000372818.5:ENST00000462797.5:ENST00000441669.6:ENST00000495175.6:ENST00000491865.5:ENST00000541099.5:ENST00000492612.6:ENST00000489945.5:ENST00000486825.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	49	2	2.06823	3.857065	5.6459	0.00680672	3.59512e-6	0.0711884	0.00123456
chr4	98899210	98899309	2208220	0	-	0.292929	(0.28,0.32]	chr4	216170	33	INTRON	INTRON	EIF4E	ENSG00000151247.13	ENST00000450253.7:ENST00000280892.10:ENST00000515638.5:ENST00000504432.5:ENST00000511644.5:ENST00000505992.1:ENST00000507665.5:ENST00000504472.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	65	2	2.84671	3.85701	4.86731	0.0116253	0.00216662	0.0889104	0.0434015
chr19	28509431	28509531	7166189	0	-	0.31	(0.28,0.32]	chr19	724189	412	INTRON	INTRON	ENSG00000283403:ENSG00000267243	ENSG00000283403.1:ENSG00000267243.6	ENST00000592347.5:ENST00000593065.5	lncRNA	lncRNA	lncRNA	lncRNA	5	105	2	1.53516	3.8569	6.17864	0.0431104	1.96985e-5	0.148082	0.00342171
chr1	35898223	35898321	70800	0	+	0.377551	(0.35,0.378]	chr1	9067	26	INTRON	INTRON	AGO1	ENSG00000092847.13	ENST00000373206.5:ENST00000373204.6:ENST00000674426.1:ENST00000674304.1:ENST00000635259.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	46	2	2.89003	3.8568999999999996	4.82377	0.0122391	0.00325499	0.0910127	0.0524329
chr8	116850030	116850128	4034394	0	-	0.316327	(0.28,0.32]	chr8	368106	11	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	RAD21	ENSG00000164754.16	ENST00000297338.7:ENST00000517485.6:ENST00000519837.6:ENST00000522699.2:ENST00000687358.1:ENST00000689124.1:ENST00000520992.6:ENST00000517749.2:ENST00000687122.1:ENST00000685972.1:ENST00000687902.1:ENST00000690166.1:ENST00000689154.1:ENST00000523986.6:ENST00000518055.1:ENST00000523547.2:ENST00000686622.1:ENST00000688033.1:ENST00000690189.1:ENST00000689504.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	66	2	2.91124	3.8568949999999997	4.80255	0.0137406	0.00165124	0.0949306	0.0375241
chr14	24228328	24228424	5845107	0	-	0.416667	(0.408,0.44]	chr14	556074	19	EXON_LNCRNA	EXON_LNCRNA:INTRON	NEDD8	ENSG00000129559.13	ENST00000250495.10:ENST00000396828.8:ENST00000527046.5:ENST00000531430.5:ENST00000526430.1:ENST00000524927.1:ENST00000533242.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	40	2	2.82042	3.856845	4.89327	0.0120121	0.00458906	0.0962115	0.0595107
chr4	109818667	109818745	2021015	0	+	0.474359	(0.44,0.476]	chr4	200966	2	SS3_PROX	SS3_PROX:INTRON	GAR1	ENSG00000109534.17	ENST00000394631.7:ENST00000506840.5:ENST00000226796.7:ENST00000503671.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	118	2	3.36855	3.856845	4.34514	1.94525e-4	9.96891e-6	0.0127418	0.00229529
chr4	22998209	22998299	1928098	0	+	0.277778	[0,0.28]	chr4	193909	1	INTRON	INTRON	ENSG00000248837	ENSG00000248837.7	ENST00000659942.1:ENST00000655325.1:ENST00000655182.1:ENST00000660103.1:ENST00000506425.2:ENST00000652324.1:ENST00000653008.1:ENST00000654546.1:ENST00000666412.1:ENST00000511453.5:ENST00000667179.1:ENST00000655768.1:ENST00000661585.1:ENST00000660296.1:ENST00000663529.1:ENST00000653872.1:ENST00000660370.1:ENST00000667156.1:ENST00000658109.1:ENST00000653188.1:ENST00000662431.1:ENST00000654588.1:ENST00000666579.1:ENST00000503017.2	lncRNA	lncRNA	lncRNA	lncRNA	2	75	2	2.27384	3.85676	5.43968	0.0233847	0.00113119	0.11839	0.0308465
chr2	53954273	53954373	1120411	0	-	0.52	(0.515,0.57]	chr2	120102	46	INTRON	INTRON	PSME4	ENSG00000068878.15	ENST00000404125.6:ENST00000389993.7:ENST00000481518.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	85	2	2.28332	3.8567549999999997	5.43019	8.47265e-4	2.60422e-4	0.026445	0.0148796
chr11	103073137	103073237	5026384	0	-	0.29	(0.28,0.32]	chr11	473935	62	INTRON	INTRON	DCUN1D5	ENSG00000137692.12	ENST00000260247.10:ENST00000527260.5:ENST00000531571.5:ENST00000531543.1:ENST00000529281.5:ENST00000529294.5:ENST00000527576.5:ENST00000527779.1:ENST00000583974.1:ENST00000525420.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	50	2	2.51488	3.8566499999999997	5.19842	0.0380957	0.00152333	0.141678	0.0360297
chrX	53654331	53654431	7821585	0	-	0.31	(0.28,0.32]	chrX	798233	2	SS3_PROX	SS3_PROX:INTRON	HUWE1	ENSG00000086758.16	ENST00000262854.11:ENST00000342160.7:ENST00000218328.12:ENST00000446750.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	50	2	2.51488	3.8566499999999997	5.19842	0.0380957	0.00152333	0.141678	0.0360297
chr4	153499382	153499482	2067582	0	+	0.41	(0.408,0.44]	chr4	204567	251	INTRON	INTRON	TMEM131L	ENSG00000121210.16	ENST00000409663.7:ENST00000445960.5:ENST00000409959.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	58	2	2.16746	3.856535	5.54561	0.024436	1.20601e-4	0.12011	0.00938389
chr9	112160598	112160697	4316635	0	-	0.434343	(0.408,0.44]	chr9	396993	26	INTRON	INTRON	SUSD1	ENSG00000106868.17	ENST00000374270.8:ENST00000374263.7:ENST00000355396.7:ENST00000374264.6	protein_coding	protein_coding	protein_coding	protein_coding	2	58	2	2.16746	3.856535	5.54561	0.024436	1.20601e-4	0.12011	0.00938389
chr8	47896560	47896660	3945093	0	-	0.53	(0.515,0.57]	chr8	361823	28	INTRON	INTRON	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7	protein_coding	protein_coding	protein_coding	protein_coding	5	162	2	3.59862	3.8564499999999997	4.11428	5.54526e-6	7.62116e-7	0.00176075	4.90537e-4
chr6	89810433	89810532	3161946	0	-	0.313131	(0.28,0.32]	chr6	294886	65	INTRON	INTRON	MDN1	ENSG00000112159.12	ENST00000369393.8:ENST00000629399.2:ENST00000439638.1	protein_coding	protein_coding	protein_coding	protein_coding	3	75	2	2.32052	3.8564350000000003	5.39235	0.00612675	0.0024844	0.0708525	0.0446195
chrX	48915735	48915813	7815667	0	-	0.512821	(0.476,0.515]	chrX	796809	1	SS3_PROX	SS3_PROX:INTRON	PIM2	ENSG00000102096.9	ENST00000376509.4	protein_coding	protein_coding	protein_coding	protein_coding	4	141	2	3.10238	3.856395	4.61041	1.64004e-4	1.88543e-6	0.0116917	8.35956e-4
chr11	880745	880844	4890163	0	-	0.545455	(0.515,0.57]	chr11	457979	55	INTRON	INTRON	CHID1	ENSG00000177830.18	ENST00000323578.13:ENST00000449825.5:ENST00000454838.6:ENST00000529539.5:ENST00000534207.5:ENST00000429789.6:ENST00000528581.5:ENST00000436108.6:ENST00000528521.1:ENST00000526714.5:ENST00000528534.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	50	2	2.1885	3.856375	5.52425	0.0202537	1.68822e-4	0.121364	0.0119215
chr3	167730976	167731073	1854012	0	-	0.340206	(0.32,0.35]	chr3	186330	1	INTRON	INTRON	PDCD10	ENSG00000114209.15	ENST00000392750.7:ENST00000473645.6:ENST00000497056.6:ENST00000461494.5:ENST00000470131.5:ENST00000475915.6:ENST00000487947.6:ENST00000471885.5:ENST00000462725.6:ENST00000492139.5:ENST00000483451.5:ENST00000494502.6:ENST00000464360.5:ENST00000481136.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	49	2	2.23182	3.856325	5.48083	0.068598	3.35843e-4	0.184298	0.0162819
chr7	1491733	1491830	3462543	0	-	0.57732000000000006	(0.57,1]	chr7	323860	17	INTRON	INTRON	INTS1	ENSG00000164880.16	ENST00000404767.8:ENST00000468115.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	28	2	2.66438	3.8562399999999997	5.0481	0.0171563	1.32594e-4	0.104099	0.00992554
chrX	20141524	20141624	7772207	0	-	0.68	(0.57,1]	chrX	794446	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	EIF1AX	ENSG00000173674.11	ENST00000379607.10:ENST00000379593.1	protein_coding	protein_coding	protein_coding	protein_coding	2	62	2	2.91889	3.85614	4.79339	0.00719009	1.04383e-7	0.0756118	1.46363e-4
chr2	231710847	231710941	1032687	0	+	0.617021	(0.57,1]	chr2	110291	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PTMA	ENSG00000187514.17	ENST00000466801.5:ENST00000448874.5:ENST00000409321.5:ENST00000341369.11:ENST00000409115.8:ENST00000481928.1:ENST00000468027.5:ENST00000409683.5:ENST00000410064.5:ENST00000412128.1:ENST00000440384.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	43	2	2.43624	3.8561250000000005	5.27601	0.00279586	3.73525e-5	0.0469265	0.00489903
chr16	89534483	89534582	6420619	0	+	0.393939	(0.378,0.408]	chr16	616256	8	INTRON	INTRON	SPG7	ENSG00000197912.16	ENST00000647079.1:ENST00000646303.1:ENST00000643649.1:ENST00000643307.1:ENST00000644498.1:ENST00000645897.1:ENST00000643668.1:ENST00000644225.1:ENST00000645818.2:ENST00000645977.1:ENST00000645063.1:ENST00000646263.1:ENST00000643724.1:ENST00000644781.1:ENST00000644901.1:ENST00000645042.1:ENST00000646531.1:ENST00000646930.1:ENST00000642436.1:ENST00000644210.1:ENST00000646589.1:ENST00000268704.7:ENST00000646826.1:ENST00000646716.1:ENST00000643345.1:ENST00000341316.6:ENST00000646958.1:ENST00000643105.1:ENST00000645354.1:ENST00000642334.1:ENST00000647227.1:ENST00000646445.1:ENST00000643954.1:ENST00000646399.1:ENST00000644671.1:ENST00000644748.1:ENST00000643496.1:ENST00000647032.1:ENST00000644751.1:ENST00000642427.1:ENST00000643370.1:ENST00000645886.1:ENST00000646454.1:ENST00000561945.2:ENST00000644171.1:ENST00000566682.2:ENST00000645258.1:ENST00000644044.1:ENST00000642263.1:ENST00000644556.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	47	2	3.19368	3.85611	4.51854	0.00748824	0.00426861	0.0772645	0.0573912
chr21	22253908	22254008	7384907	0	+	0.4	(0.378,0.408]	chr21	752727	407	INTRON	INTRON	ENSG00000226043	ENSG00000226043.2	ENST00000667099.1:ENST00000654607.1:ENST00000444130.1	lncRNA	lncRNA	lncRNA	lncRNA	1	47	2	3.19368	3.85611	4.51854	0.00748824	0.00426861	0.0772645	0.0573912
chr9	128227753	128227851	4203306	0	+	0.295918	(0.28,0.32]	chr9	384064	12	INTRON	INTRON	DNM1	ENSG00000106976.21	ENST00000372923.8:ENST00000341179.11:ENST00000475805.5:ENST00000393594.7:ENST00000628346.2:ENST00000486160.3:ENST00000627543.2:ENST00000627061.2:ENST00000634267.2:ENST00000637999.1:ENST00000441149.6:ENST00000482638.6:ENST00000637317.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	231	2	2.83905	3.856015	4.87298	2.65824e-4	8.50723e-7	0.0149989	5.20245e-4
chr3	185762295	185762395	1885721	0	-	0.45	(0.44,0.476]	chr3	188573	636	INTRON	INTRON	IGF2BP2	ENSG00000073792.16	ENST00000382199.7:ENST00000346192.7:ENST00000457616.6:ENST00000421047.3:ENST00000461957.5:ENST00000493302.5:ENST00000466476.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	117	2	3.67744	3.856005	4.03457	1.03446e-4	2.09874e-5	0.00915599	0.00354405
chrX	111693862	111693961	7702145	0	+	0.424242	(0.408,0.44]	chrX	788221	38	INTRON	INTRON	ALG13	ENSG00000101901.12	ENST00000487141.5:ENST00000394780.8:ENST00000251943.8:ENST00000610588.4:ENST00000621367.4:ENST00000622997.3:ENST00000624161.3:ENST00000636363.1:ENST00000624881.3:ENST00000495283.5:ENST00000486353.5:ENST00000623144.3:ENST00000470971.5:ENST00000623148.3:ENST00000471924.5:ENST00000436609.5:ENST00000470704.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	43	2	2.58624	3.85596	5.12568	0.0273686	7.90919e-4	0.123904	0.0258324
chr17	21627174	21627274	6578425	0	+	0.41	(0.408,0.44]	chr17	639543	123	INTRON	INTRON	ENSG00000260157	ENSG00000260157.3	ENST00000618784.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	1	44	2	2.36073	3.8558	5.35087	0.0481658	3.00323e-4	0.153019	0.0155054
chr7	2291566	2291665	3467456	0	-	0.434343	(0.408,0.44]	chr7	324232	129	INTRON	INTRON	SNX8	ENSG00000106266.11	ENST00000222990.8:ENST00000435060.5:ENST00000457286.5:ENST00000435336.5:ENST00000494722.1:ENST00000447136.1:ENST00000419693.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	43	2	2.78122	3.8557300000000003	4.93024	0.015812	0.00170369	0.101453	0.0381936
chr22	23266456	23266552	7484072	0	+	0.59375	(0.57,1]	chr22	763569	16	INTRON	INTRON	BCR	ENSG00000186716.21	ENST00000359540.7:ENST00000305877.13:ENST00000427791.1	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	3.2676	3.85563	4.44366	0.00210922	0.00176203	0.0425419	0.0376652
chr13	19676833	19676931	5551872	0	-	0.357143	(0.35,0.378]	chr13	530666	8	INTRON	INTRON	PSPC1	ENSG00000121390.19	ENST00000497722.2:ENST00000471658.5:ENST00000635251.1:ENST00000492741.5:ENST00000635562.1	protein_coding	retained_intron	protein_coding	retained_intron:nonsense_mediated_decay	1	42	2	2.99173	3.8556299999999997	4.71953	0.0103314	0.00713365	0.0850389	0.0756118
chr16	80982147	80982232	6530443	0	-	0.352941	(0.35,0.378]	chr16	632642	3	SS3_PROX	SS3_PROX:INTRON	CMC2	ENSG00000103121.9	ENST00000219400.8:ENST00000563779.5:ENST00000566918.5:ENST00000486645.5:ENST00000570195.5:ENST00000566047.5:ENST00000561614.5:ENST00000566231.5:ENST00000569187.5:ENST00000570086.5:ENST00000564249.5:ENST00000565650.5:ENST00000567593.5:ENST00000568228.5:ENST00000565914.5:ENST00000565108.5:ENST00000565925.5:ENST00000564174.5:ENST00000565613.5:ENST00000569666.5:ENST00000562713.3:ENST00000562828.5:ENST00000630396.1:ENST00000565514.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	42	2	2.99173	3.8556299999999997	4.71953	0.0103314	0.00713365	0.0850389	0.0756118
chr17	39392771	39392871	6766564	0	-	0.51	(0.476,0.515]	chr17	665497	492	INTRON	INTRON	FBXL20	ENSG00000108306.13	ENST00000264658.11:ENST00000583610.5:ENST00000394294.7:ENST00000577399.5:ENST00000647139.1	protein_coding	protein_coding	protein_coding	protein_coding	2	57	2	2.21677	3.855555	5.49434	0.0207026	1.62782e-4	0.110999	0.0109774
chr19	49085820	49085904	7088372	0	+	0.511905	(0.476,0.515]	chr19	709519	2	SS5_PROX	SS5_PROX:INTRON	SNRNP70	ENSG00000104852.15	ENST00000601065.5:ENST00000598984.5:ENST00000598441.6:ENST00000401730.5:ENST00000221448.9:ENST00000597936.5:ENST00000595231.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	57	2	2.21677	3.855555	5.49434	0.0207026	1.62782e-4	0.110999	0.0109774
chr8	134796584	134796683	4067949	0	-	0.323232	(0.32,0.35]	chr8	369974	47	EXON_LNCRNA	EXON_LNCRNA:INTRON	ENSG00000289405:ENSG00000259820	ENSG00000289405.1:ENSG00000259820.1	ENST00000688995.1:ENST00000684995.1:ENST00000568248.1	lncRNA	lncRNA	lncRNA	lncRNA	1	49	2	2.99125	3.8554749999999998	4.7197	0.00958447	0.00568521	0.0820838	0.0678837
chrX	114052633	114052733	7868568	0	-	0.29	(0.28,0.32]	chrX	801557	98	INTRON	INTRON	XACT	ENSG00000241743.4	ENST00000468762.3:ENST00000649506.1	lncRNA	lncRNA	lncRNA	lncRNA	3	153	2	3.60148	3.8552549999999997	4.10903	1.2396e-4	7.08337e-5	0.010016	0.00695952
chr4	99060361	99060458	2003372	0	+	0.494845	(0.476,0.515]	chr4	199883	22	INTRON	INTRON	METAP1	ENSG00000164024.12	ENST00000296411.11:ENST00000510133.5:ENST00000514051.1	protein_coding	protein_coding	protein_coding	protein_coding	3	66	2	2.55884	3.855135	5.15143	0.00186081	0.00166579	0.039946	0.0369207
chr17	8269830	8269924	6555104	0	+	0.425532	(0.408,0.44]	chr17	637271	7	UTR3	UTR3:EXON_MRNA	PFAS	ENSG00000178921.14	ENST00000314666.11:ENST00000546020.2	protein_coding	protein_coding	protein_coding	protein_coding	1	44	2	3.00595	3.8550250000000004	4.7041	0.00781452	0.00381677	0.0759016	0.0562562
chr5	113584879	113584979	2454594	0	+	0.44	(0.408,0.44]	chr5	235270	4	SS5_PROX	SS5_PROX:INTRON	YTHDC2	ENSG00000047188.16	ENST00000161863.9:ENST00000512600.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	44	2	3.00595	3.8550250000000004	4.7041	0.00781452	0.00381677	0.0759016	0.0562562
chr2	168888529	168888627	1259768	0	-	0.397959	(0.378,0.408]	chr2	133393	33	INTRON	INTRON	SPC25	ENSG00000152253.9	ENST00000479309.6:ENST00000282074.7:ENST00000472216.2:ENST00000451987.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	75	2	2.15574	3.8548100000000005	5.55388	0.00519611	5.01023e-4	0.0654762	0.0206993
chr16	1963552	1963652	6430560	0	-	0.57	(0.515,0.57]	chr16	618457	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPS2	ENSG00000140988.16	ENST00000343262.9:ENST00000526522.5:ENST00000533161.5:ENST00000527871.5:ENST00000530225.5:ENST00000531065.5:ENST00000527109.5:ENST00000533872.5:ENST00000532746.5:ENST00000533186.5:ENST00000529806.5:ENST00000534461.5:ENST00000527302.1:ENST00000526908.1:ENST00000527826.1:ENST00000563194.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	385	2	3.80761	3.8547849999999997	3.90196	1.37085e-7	4.04759e-9	1.68399e-4	1.45432e-5
chr11	46636614	46636713	4784866	0	+	0.444444	(0.44,0.476]	chr11	442604	38	INTRON	INTRON	ATG13	ENSG00000175224.17	ENST00000580238.5:ENST00000581416.5:ENST00000529655.5:ENST00000533325.5:ENST00000683050.1:ENST00000583249.5:ENST00000581438.5:ENST00000526508.5:ENST00000530500.5:ENST00000577256.5:ENST00000578626.5:ENST00000524625.5:ENST00000534610.5:ENST00000582547.5:ENST00000359513.8:ENST00000528494.5:ENST00000395549.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	40	2	3.02366	3.8546500000000004	4.68564	0.00816201	0.00603307	0.0766625	0.0700813
chr16	74599866	74599965	6525260	0	-	0.454545	(0.44,0.476]	chr16	631842	367	INTRON	INTRON	GLG1	ENSG00000090863.12	ENST00000205061.9:ENST00000422840.7:ENST00000447066.6:ENST00000562090.5:ENST00000567951.5:ENST00000627032.2:ENST00000565260.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	40	2	3.02366	3.8546500000000004	4.68564	0.00816201	0.00603307	0.0766625	0.0700813
chr17	76634812	76634911	6843581	0	-	0.444444	(0.44,0.476]	chr17	676980	6	INTRON	INTRON	ST6GALNAC1	ENSG00000070526.15	ENST00000592042.5:ENST00000156626.12:ENST00000359088.9:ENST00000590878.1:ENST00000589813.5:ENST00000590915.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	40	2	3.02366	3.8546500000000004	4.68564	0.00816201	0.00603307	0.0766625	0.0700813
chr6	157907395	157907494	3016612	0	+	0.474747	(0.44,0.476]	chr6	281403	13	EXON_MRNA	EXON_MRNA:INTRON	SNX9	ENSG00000130340.17	ENST00000680863.1:ENST00000679814.1:ENST00000680464.1:ENST00000681186.1:ENST00000679732.1:ENST00000681183.1:ENST00000681534.1:ENST00000681651.1:ENST00000680089.1:ENST00000680078.1:ENST00000680974.1:ENST00000680095.1:ENST00000680015.1:ENST00000681138.1:ENST00000392185.8:ENST00000679790.1:ENST00000680495.1:ENST00000679691.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	40	2	3.02366	3.8546500000000004	4.68564	0.00816201	0.00603307	0.0766625	0.0700813
chr6	157939038	157939135	3016944	0	+	0.463918	(0.44,0.476]	chr6	281452	4	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	SNX9	ENSG00000130340.17	ENST00000680863.1:ENST00000679814.1:ENST00000680464.1:ENST00000681186.1:ENST00000679732.1:ENST00000681183.1:ENST00000681534.1:ENST00000681651.1:ENST00000680089.1:ENST00000680078.1:ENST00000680974.1:ENST00000681138.1:ENST00000392185.8:ENST00000679790.1:ENST00000680495.1:ENST00000679691.1:ENST00000681881.1:ENST00000681469.1:ENST00000680680.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	40	2	3.02366	3.8546500000000004	4.68564	0.00816201	0.00603307	0.0766625	0.0700813
chr7	101918913	101919012	3367381	0	+	0.474747	(0.44,0.476]	chr7	315225	23	INTRON	INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000497815.5:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000558469.5:ENST00000560541.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	40	2	3.02366	3.8546500000000004	4.68564	0.00816201	0.00603307	0.0766625	0.0700813
chr15	20502610	20502709	6118909	0	-	0.343434	(0.32,0.35]	chr15	582487	5	INTRON	INTRON	HERC2P3	ENSG00000180229.12	ENST00000428453.5:ENST00000437318.5:ENST00000430598.5:ENST00000429257.5:ENST00000414804.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	3	78	2	2.09793	3.8545849999999997	5.61124	0.0156788	1.88018e-4	0.101453	0.011951
chr3	136155135	136155235	1823827	0	-	0.53	(0.515,0.57]	chr3	183518	20	INTRON	INTRON	MSL2	ENSG00000174579.4	ENST00000309993.3:ENST00000434835.2:ENST00000481989.1:ENST00000491050.1:ENST00000473093.1	protein_coding	protein_coding	protein_coding	protein_coding	2	49	2	2.32836	3.85456	5.38076	0.0126662	3.24968e-4	0.0982897	0.0165891
chr12	110733552	110733647	5411440	0	-	0.336842	(0.32,0.35]	chr12	516738	7	INTRON	INTRON	PPP1CC	ENSG00000186298.12	ENST00000335007.10:ENST00000340766.9:ENST00000550991.5:ENST00000551676.5:ENST00000620030.1:ENST00000551690.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:processed_transcript	2	60	2	2.7493	3.854505	4.95971	0.00663522	0.00296357	0.0703181	0.0500135
chr12	96308171	96308271	5394353	0	-	0.37	(0.35,0.378]	chr12	514431	48	INTRON	INTRON	CDK17	ENSG00000059758.8	ENST00000261211.8:ENST00000543119.6:ENST00000542666.5	protein_coding	protein_coding	protein_coding	protein_coding	5	87	2	2.09348	3.8544600000000004	5.61544	0.00418185	5.06729e-4	0.0591344	0.020816
chr3	108054343	108054442	1768916	0	-	0.323232	(0.32,0.35]	chr3	178921	25	EXON_MRNA	EXON_MRNA:INTRON	CD47	ENSG00000196776.17	ENST00000361309.6:ENST00000355354.13:ENST00000471694.1:ENST00000517766.5:ENST00000398258.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	106	2	1.74172	3.8542899999999998	5.96686	0.0100556	1.77352e-4	0.0882152	0.0121697
chr3	138731564	138731664	1830459	0	-	0.23	[0,0.28]	chr3	184011	165	INTRON	INTRON	PIK3CB	ENSG00000051382.9	ENST00000674063.1:ENST00000289153.6:ENST00000477593.5:ENST00000462898.5:ENST00000462294.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	67	2	2.15457	3.8540650000000003	5.55356	0.0269306	0.00278704	0.135288	0.0469265
chr17	51101376	51101476	6796823	0	-	0.31	(0.28,0.32]	chr17	671024	213	INTRON	INTRON	SPAG9	ENSG00000008294.22	ENST00000262013.12:ENST00000505279.5:ENST00000357122.8	protein_coding	protein_coding	protein_coding	protein_coding	1	46	2	2.97333	3.854035	4.73474	0.0162835	0.00857834	0.101453	0.083729
chr5	91372805	91372899	2674877	0	-	0.319149	(0.28,0.32]	chr5	253083	10	INTRON	INTRON	ARRDC3	ENSG00000113369.9	ENST00000265138.4:ENST00000511391.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	46	2	2.97333	3.854035	4.73474	0.0162835	0.00857834	0.101453	0.083729
chr1	100977657	100977757	175163	0	+	0.32	(0.28,0.32]	chr1	18985	29	UTR3	UTR3:EXON_MRNA	SLC30A7	ENSG00000162695.12	ENST00000370112.8:ENST00000357650.9	protein_coding	protein_coding	protein_coding	protein_coding	1	46	2	2.60656	3.853625	5.10069	0.0256827	0.00610574	0.133676	0.0676501
chr3	183864761	183864858	1881403	0	-	0.28866000000000003	(0.28,0.32]	chr3	188026	16	INTRON	INTRON	PARL	ENSG00000175193.14	ENST00000639100.1:ENST00000317096.9:ENST00000638817.1:ENST00000311101.9:ENST00000435888.5:ENST00000639900.1:ENST00000421484.5:ENST00000449306.1:ENST00000469056.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	46	2	2.60656	3.853625	5.10069	0.0256827	0.00610574	0.133676	0.0676501
chr6	157414749	157414849	3011878	0	+	0.3	(0.28,0.32]	chr6	281268	321	INTRON	INTRON	ZDHHC14	ENSG00000175048.17	ENST00000414563.6:ENST00000359775.10	protein_coding	protein_coding	protein_coding	protein_coding	1	46	2	2.60656	3.853625	5.10069	0.0256827	0.00610574	0.133676	0.0676501
chr6	36596168	36596260	2854430	0	+	0.532609	(0.515,0.57]	chr6	269770	11	INTRON	INTRON	SRSF3	ENSG00000112081.17	ENST00000613941.4:ENST00000373715.11:ENST00000620242.1:ENST00000339436.11:ENST00000477442.6:ENST00000620941.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	65	2	2.57713	3.853435	5.12974	0.00176427	4.54392e-4	0.0376652	0.0192381
chr7	44844049	44844147	3528643	0	-	0.285714	(0.28,0.32]	chr7	329123	3	INTRON	INTRON	H2AZ2	ENSG00000105968.19	ENST00000222690.10:ENST00000437072.5:ENST00000308153.9:ENST00000350771.7:ENST00000349299.7:ENST00000381124.9:ENST00000521529.5:ENST00000446531.1	protein_coding	protein_coding	protein_coding	protein_coding	1	50	2	2.45545	3.85343	5.25141	0.0438092	0.00125199	0.14901	0.0328543
chr12	71654062	71654161	5363494	0	-	0.292929	(0.28,0.32]	chr12	512031	59	INTRON	INTRON	ZFC3H1	ENSG00000133858.17	ENST00000378743.9:ENST00000552994.5:ENST00000550712.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	51	2	2.2609	3.853365	5.44583	0.0671429	5.8721e-4	0.183051	0.0220073
chr3	167704557	167704651	1853744	0	-	0.297872	(0.28,0.32]	chr3	186309	1	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	PDCD10	ENSG00000114209.15	ENST00000392750.7:ENST00000473645.6:ENST00000497056.6:ENST00000492396.5:ENST00000461494.5:ENST00000470131.5:ENST00000475915.6:ENST00000487947.6:ENST00000471885.5:ENST00000479121.5:ENST00000462725.6:ENST00000492139.5:ENST00000483451.5:ENST00000494502.6:ENST00000464360.5:ENST00000481136.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	51	2	2.2609	3.853365	5.44583	0.0671429	5.8721e-4	0.183051	0.0220073
chr4	150914741	150914841	2270758	0	-	0.31	(0.28,0.32]	chr4	220890	4	SS3_PROX	SS3_PROX:INTRON	LRBA	ENSG00000198589.14	ENST00000357115.9:ENST00000651943.2:ENST00000510413.5:ENST00000651035.1:ENST00000507224.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	51	2	2.2609	3.853365	5.44583	0.0671429	5.8721e-4	0.183051	0.0220073
chr5	138348541	138348640	2494838	0	+	0.474747	(0.44,0.476]	chr5	238465	17	UTR3	UTR3:EXON_MRNA	FAM53C	ENSG00000120709.11	ENST00000239906.10	protein_coding	protein_coding	protein_coding	protein_coding	3	64	2	2.30673	3.853365	5.4	0.0055175	7.02611e-4	0.0672816	0.024224
chr8	52653420	52653520	3950480	0	-	0.37	(0.35,0.378]	chr8	362312	72	INTRON	INTRON	RB1CC1	ENSG00000023287.13	ENST00000025008.10:ENST00000435644.6:ENST00000521611.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	56	2	2.49643	3.853305	5.21018	0.00752974	0.00228003	0.0773151	0.0426265
chr20	5576378	5576478	7311990	0	-	0.32	(0.28,0.32]	chr20	744576	4	SS3_PROX	SS3_PROX:INTRON	GPCPD1	ENSG00000125772.14	ENST00000379019.7:ENST00000481038.5:ENST00000481690.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	50	2	2.67975	3.853205	5.02666	0.0252505	0.0027935	0.12011	0.0488769
chr4	6882131	6882228	1922588	0	+	0.505155	(0.476,0.515]	chr4	193044	13	UTR3	UTR3:EXON_MRNA	KIAA0232	ENSG00000170871.12	ENST00000307659.6:ENST00000425103.5	protein_coding	protein_coding	protein_coding	protein_coding	3	71	2	2.4132	3.853005	5.29281	0.00417094	4.07635e-4	0.0570595	0.0181306
chr16	29445836	29445929	6469994	0	-	0.333333	(0.32,0.35]	chr16	625057	10	INTRON	INTRON	SMG1P6:ENSG00000288632:BOLA2-SMG1P6	ENSG00000254634.4:ENSG00000288632.1:ENSG00000261740.7	ENST00000532337.1:ENST00000675579.1:ENST00000569622.6:ENST00000565417.6:ENST00000568556.2:ENST00000380596.10	protein_coding	protein_coding	protein_coding:lncRNA:unprocessed_pseudogene	protein_coding:nonsense_mediated_decay:lncRNA:unprocessed_pseudogene	2	59	2	2.6297	3.852995	5.07629	0.00476699	0.00468114	0.0636201	0.0600108
chr9	37188053	37188152	4118337	0	+	0.323232	(0.32,0.35]	chr9	375389	11	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000461038.5:ENST00000488607.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	59	2	2.6297	3.852995	5.07629	0.00476699	0.00468114	0.0636201	0.0600108
chr16	87752225	87752323	6538538	0	-	0.377551	(0.35,0.378]	chr16	633553	14	INTRON	INTRON	KLHDC4	ENSG00000104731.14	ENST00000567298.5:ENST00000270583.10:ENST00000347925.9:ENST00000353170.9:ENST00000562155.5:ENST00000622456.4:ENST00000562261.1:ENST00000566661.5:ENST00000564484.5:ENST00000565328.5:ENST00000569747.5:ENST00000564396.5:ENST00000568502.1:ENST00000561825.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	85	2	1.90784	3.85296	5.79808	0.0165983	5.23926e-5	0.102621	0.00590498
chr19	19411218	19411318	7035401	0	+	0.52	(0.515,0.57]	chr19	701433	48	INTRON	INTRON	GATAD2A	ENSG00000167491.18	ENST00000494516.6:ENST00000360315.7:ENST00000609040.5:ENST00000417582.6:ENST00000683918.1:ENST00000448576.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	41	2	3.30665	3.852825	4.399	0.00708863	0.00213226	0.0754923	0.041756
chr13	106543607	106543704	5648685	0	-	0.371134	(0.35,0.378]	chr13	538141	21	UTR3	UTR3:EXON_MRNA	ARGLU1	ENSG00000134884.15	ENST00000400198.8:ENST00000472226.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	60	2	2.98607	3.8528	4.71953	0.0103314	9.86191e-4	0.0850389	0.0288537
chr19	28515124	28515223	7166246	0	-	0.282828	(0.28,0.32]	chr19	724189	469	INTRON	INTRON	ENSG00000283403:ENSG00000267243	ENSG00000283403.1:ENSG00000267243.6	ENST00000592347.5:ENST00000593065.5	lncRNA	lncRNA	lncRNA	lncRNA	6	104	2	1.4463	3.852745	6.25919	0.0388417	9.00783e-5	0.160515	0.00844245
chr3	49708094	49708194	1422772	0	+	0.48	(0.476,0.515]	chr3	149879	8	INTRON	INTRON	RNF123	ENSG00000164068.16	ENST00000432042.5:ENST00000457726.5:ENST00000327697.11:ENST00000486102.5:ENST00000487805.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	47	2	3.37632	3.852735	4.32915	0.0124637	0.00195267	0.0973643	0.0400465
chr1	246918877	246918976	681832	0	-	0.333333	(0.32,0.35]	chr1	80043	1	INTRON	INTRON	AHCTF1	ENSG00000153207.16	ENST00000648844.2:ENST00000326225.3:ENST00000366508.5	protein_coding	protein_coding	protein_coding	protein_coding	2	64	2	2.1362	3.8526350000000003	5.56907	0.0291083	2.27532e-4	0.128029	0.0133228
chr7	6027061	6027161	3475911	0	-	0.52	(0.515,0.57]	chr7	325170	1	SS3_PROX	SS3_PROX:INTRON	EIF2AK1	ENSG00000086232.13	ENST00000199389.11:ENST00000490523.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	40	2	2.34087	3.852635	5.3644	0.0469761	1.52226e-4	0.151917	0.0106137
chr6	13658579	13658679	3058692	0	-	0.34	(0.32,0.35]	chr6	284537	4	SS5_PROX	SS5_PROX:INTRON	RANBP9	ENSG00000010017.13	ENST00000011619.6	protein_coding	protein_coding	protein_coding	protein_coding	2	59	2	2.19668	3.8526050000000005	5.50853	0.021398	0.0010959399999999999	0.123719	0.0304174
chr16	80982318	80982416	6530445	0	-	0.479592	(0.476,0.515]	chr16	632643	1	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	CMC2:ENSG00000278985	ENSG00000103121.9:ENSG00000278985.1	ENST00000219400.8:ENST00000563779.5:ENST00000566918.5:ENST00000486645.5:ENST00000570195.5:ENST00000566047.5:ENST00000561614.5:ENST00000566231.5:ENST00000569187.5:ENST00000570086.5:ENST00000564249.5:ENST00000565650.5:ENST00000567593.5:ENST00000568228.5:ENST00000565914.5:ENST00000565108.5:ENST00000565925.5:ENST00000564174.5:ENST00000565613.5:ENST00000569666.5:ENST00000562713.3:ENST00000562828.5:ENST00000630396.1:ENST00000565514.1:ENST00000623577.1	protein_coding	protein_coding	protein_coding:TEC	protein_coding:retained_intron:nonsense_mediated_decay:TEC:processed_transcript	1	40	2	3.01197	3.852585	4.6932	0.00753088	0.00633162	0.074841	0.0722266
chr9	111668579	111668673	4184433	0	+	0.489362	(0.476,0.515]	chr9	381676	13	INTRON	INTRON	DNAJC25-GNG10:GNG10	ENSG00000244115.1:ENSG00000242616.4	ENST00000374294.3:ENST00000374293.5	protein_coding	protein_coding	protein_coding	protein_coding	1	40	2	3.01197	3.852585	4.6932	0.00753088	0.00633162	0.074841	0.0722266
chr14	74890655	74890755	5789869	0	+	0.42	(0.408,0.44]	chr14	548581	2	SS3_PROX	SS3_PROX:INTRON	DLST	ENSG00000119689.15	ENST00000556460.5:ENST00000555492.5:ENST00000554612.5:ENST00000334220.9:ENST00000238671.11:ENST00000556582.5:ENST00000555071.5:ENST00000555190.5:ENST00000555459.5:ENST00000555089.5:ENST00000626051.1:ENST00000554806.5:ENST00000555988.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	58	2	2.11447	3.8524599999999998	5.59045	0.0285207	9.6776e-5	0.12666	0.00826486
chr12	62536850	62536950	5151877	0	+	0.48	(0.476,0.515]	chr12	487539	3	SS3_PROX	SS3_PROX:INTRON	MON2	ENSG00000061987.16	ENST00000641654.1:ENST00000546600.5:ENST00000393630.8:ENST00000547095.5:ENST00000552738.5:ENST00000393629.6:ENST00000552115.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	40	2	2.73205	3.85229	4.97253	0.0159328	0.00311573	0.109464	0.0498063
chr3	37002041	37002139	1395232	0	+	0.479592	(0.476,0.515]	chr3	146186	6	INTRON	INTRON	MLH1	ENSG00000076242.16	ENST00000536378.5:ENST00000673899.1:ENST00000674111.1:ENST00000673972.1:ENST00000457004.5:ENST00000673713.1:ENST00000231790.8:ENST00000673715.1:ENST00000432299.6:ENST00000673897.1:ENST00000442249.6:ENST00000454028.5:ENST00000673947.1:ENST00000456676.6:ENST00000673673.1:ENST00000674019.1:ENST00000458205.6:ENST00000413212.2:ENST00000447829.6:ENST00000673990.1:ENST00000455445.6:ENST00000435176.5:ENST00000539477.6:ENST00000441265.6:ENST00000492474.5:ENST00000429117.5:ENST00000674107.1:ENST00000466900.5:ENST00000485889.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	40	2	2.73205	3.85229	4.97253	0.0159328	0.00311573	0.109464	0.0498063
chr12	108686977	108687077	5406329	0	-	0.44	(0.408,0.44]	chr12	516011	82	INTRON	INTRON	CORO1C	ENSG00000110880.11	ENST00000261401.8:ENST00000420959.6:ENST00000541050.5:ENST00000549384.5:ENST00000421578.6:ENST00000550542.5:ENST00000549772.5:ENST00000552871.5:ENST00000547294.5:ENST00000550032.5:ENST00000551550.5:ENST00000546571.5:ENST00000551044.1:ENST00000547170.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	40	2	3.02513	3.852035	4.67894	0.0087648	0.0059965	0.0788605	0.0700606
chr15	101292931	101293024	6270024	0	-	0.419355	(0.408,0.44]	chr15	598026	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	SNRPA1	ENSG00000131876.18	ENST00000254193.11:ENST00000558036.5:ENST00000559309.5:ENST00000394082.8:ENST00000540017.6:ENST00000560496.5:ENST00000560383.5:ENST00000558059.5:ENST00000560987.5:ENST00000560856.5:ENST00000558020.1:ENST00000561187.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	40	2	3.02513	3.852035	4.67894	0.0087648	0.0059965	0.0788605	0.0700606
chr20	17966402	17966501	7320548	0	-	0.434343	(0.408,0.44]	chr20	745337	36	INTRON	INTRON	SNX5	ENSG00000089006.17	ENST00000377768.7:ENST00000490175.5:ENST00000377759.9:ENST00000431277.5:ENST00000419004.2:ENST00000474883.5:ENST00000469704.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	40	2	3.02513	3.852035	4.67894	0.0087648	0.0059965	0.0788605	0.0700606
chr6	32975775	32975860	2846489	0	+	0.411765	(0.408,0.44]	chr6	268465	4	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	BRD2	ENSG00000204256.14	ENST00000374825.9:ENST00000469132.2:ENST00000679179.1:ENST00000678778.1:ENST00000449085.4:ENST00000677331.1:ENST00000456339.5:ENST00000678250.1:ENST00000677085.1:ENST00000374831.8:ENST00000495733.5:ENST00000482914.5:ENST00000679099.1:ENST00000464592.6:ENST00000607833.5:ENST00000395287.5:ENST00000449025.5:ENST00000463639.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	40	2	3.02513	3.852035	4.67894	0.0087648	0.0059965	0.0788605	0.0700606
chr6	34656176	34656276	3085813	0	-	0.41	(0.408,0.44]	chr6	288692	10	INTRON	INTRON	ILRUN	ENSG00000196821.10	ENST00000374026.7:ENST00000374023.8:ENST00000374021.1	protein_coding	protein_coding	protein_coding	protein_coding	1	40	2	3.02513	3.852035	4.67894	0.0087648	0.0059965	0.0788605	0.0700606
chr11	3784738	3784837	4895047	0	-	0.363636	(0.35,0.378]	chr11	458931	22	INTRON	INTRON	NUP98	ENSG00000110713.17	ENST00000359171.8:ENST00000324932.12:ENST00000650171.1:ENST00000355260.7:ENST00000397004.8:ENST00000397007.8:ENST00000532475.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	77	2	2.04967	3.85192	5.65417	0.00827328	4.33402e-4	0.0813266	0.0190829
chr1	42828622	42828721	84416	0	+	0.444444	(0.44,0.476]	chr1	11098	25	INTRON	INTRON	ERMAP	ENSG00000164010.15	ENST00000372517.8:ENST00000643061.1:ENST00000645239.1:ENST00000647120.1:ENST00000487556.6:ENST00000642150.1:ENST00000372514.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	69	2	1.94723	3.8518600000000003	5.75649	0.0227424	4.17314e-5	0.117618	0.00523306
chr12	122097161	122097261	5240046	0	+	0.56	(0.515,0.57]	chr12	497496	175	INTRON	INTRON	MLXIP	ENSG00000175727.14	ENST00000319080.12	protein_coding	protein_coding	protein_coding	protein_coding	3	102	2	3.34008	3.8518549999999996	4.36363	1.23135e-4	1.01297e-5	0.00949625	0.00247779
chr8	47799790	47799890	3944073	0	-	0.36	(0.35,0.378]	chr8	361586	4	SS3_PROX	SS3_PROX:INTRON	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7	protein_coding	protein_coding	protein_coding	protein_coding	1	54	2	3.51348	3.8518499999999998	4.19022	0.0209891	0.00136294	0.122348	0.0336321
chr7	8343606	8343706	3281082	0	+	0.42	(0.408,0.44]	chr7	304847	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ENSG00000229970	ENSG00000229970.3	ENST00000424460.1	lncRNA	lncRNA	lncRNA	lncRNA	1	40	2	2.74518	3.851675	4.95817	0.0152229	0.00372419	0.108535	0.0535094
chr10	21699713	21699813	4406087	0	+	0.31	(0.28,0.32]	chr10	406537	27	INTRON	INTRON	MLLT10	ENSG00000078403.17	ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000651298.1:ENST00000377059.7:ENST00000651382.1:ENST00000438473.6:ENST00000420525.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	85	2	2.03152	3.8515449999999998	5.67157	0.00983556	9.48957e-4	0.0877296	0.0281755
chr1	39748172	39748271	79442	0	+	0.353535	(0.35,0.378]	chr1	10283	28	UTR3	UTR3:EXON_MRNA:INTRON	PPIE	ENSG00000084072.17	ENST00000324379.10:ENST00000356511.6:ENST00000495526.5:ENST00000482751.5:ENST00000372830.5:ENST00000372835.9:ENST00000470213.5:ENST00000497370.5:ENST00000474804.5:ENST00000475350.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	95	2	3.73225	3.851325	3.9704	5.46487e-4	1.01653e-4	0.0215463	0.00850967
chr6	119197274	119197373	3204286	0	-	0.363636	(0.35,0.378]	chr6	298290	30	INTRON	INTRON	MAN1A1	ENSG00000111885.7	ENST00000368468.4	protein_coding	protein_coding	protein_coding	protein_coding	2	95	2	3.73225	3.851325	3.9704	5.46487e-4	1.01653e-4	0.0215463	0.00850967
chr3	10279619	10279719	1364366	0	+	0.46	(0.44,0.476]	chr3	143803	5	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TATDN2	ENSG00000157014.11	ENST00000287652.8:ENST00000448281.7:ENST00000496355.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	43	2	2.9195	3.8512150000000003	4.78293	0.0102021	0.00292033	0.0850389	0.0494641
chr8	55948123	55948223	3755023	0	+	0.46	(0.44,0.476]	chr8	349272	4	SS5_PROX	SS5_PROX:INTRON	LYN	ENSG00000254087.8	ENST00000519728.6:ENST00000520220.6:ENST00000520050.1	protein_coding	protein_coding	protein_coding	protein_coding	1	43	2	2.9195	3.8512150000000003	4.78293	0.0102021	0.00292033	0.0850389	0.0494641
chr1	37550667	37550766	424232	0	-	0.343434	(0.32,0.35]	chr1	51285	13	INTRON	INTRON	SNIP1	ENSG00000163877.11	ENST00000296215.8:ENST00000468040.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	79	2	2.2214	3.851115	5.48083	0.0103516	3.35843e-4	0.085045	0.0162819
chr6	104961382	104961482	2929894	0	+	0.44	(0.408,0.44]	chr6	276110	27	INTRON	INTRON	LIN28B	ENSG00000187772.8	ENST00000635857.1:ENST00000637759.1:ENST00000345080.5	protein_coding	protein_coding	protein_coding	protein_coding	3	122	2	3.19065	3.8510100000000005	4.51137	3.2984e-4	8.20456e-6	0.0161352	0.0021736
chr16	27487718	27487818	6466637	0	-	0.45	(0.44,0.476]	chr16	624309	1	SS5_PROX	SS5_PROX:INTRON	GTF3C1	ENSG00000077235.18	ENST00000356183.9:ENST00000561623.5:ENST00000569653.1:ENST00000564664.5:ENST00000568569.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	46	2	3.26669	3.8509700000000002	4.43525	0.00897296	0.00305435	0.0849778	0.0493883
chr14	93287028	93287128	5963473	0	-	0.53	(0.515,0.57]	chr14	566271	227	INTRON	INTRON	BTBD7	ENSG00000011114.15	ENST00000334746.10:ENST00000355125.3:ENST00000554565.5:ENST00000553975.1:ENST00000554644.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	37	2	3.19178	3.8508899999999997	4.51	0.00809449	0.00289534	0.0766625	0.0494641
chr9	137090484	137090583	4222687	0	+	0.545455	(0.515,0.57]	chr9	387910	8	INTRON	INTRON	MAN1B1	ENSG00000177239.16	ENST00000682881.1:ENST00000683324.1:ENST00000684138.1:ENST00000683135.1:ENST00000542372.2:ENST00000371587.9:ENST00000684366.1:ENST00000684229.1:ENST00000683355.1:ENST00000682117.1:ENST00000683475.1:ENST00000682425.1:ENST00000682210.1:ENST00000684645.1:ENST00000683979.1:ENST00000371589.9:ENST00000535144.6:ENST00000684272.1:ENST00000475449.7:ENST00000684759.1:ENST00000545539.6:ENST00000684144.1:ENST00000683987.1:ENST00000682212.1:ENST00000544448.6:ENST00000684297.1:ENST00000540346.2:ENST00000474902.5:ENST00000683113.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	37	2	3.19178	3.8508899999999997	4.51	0.00809449	0.00289534	0.0766625	0.0494641
chr16	85415225	85415325	6413982	0	+	0.46	(0.44,0.476]	chr16	615465	559	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	2	57	2	1.93084	3.8507249999999997	5.77061	0.0443175	1.44264e-4	0.162302	0.0109794
chr14	96507990	96508089	5810223	0	+	0.464646	(0.44,0.476]	chr14	550883	29	INTRON	INTRON	PAPOLA	ENSG00000090060.19	ENST00000554887.5:ENST00000618976.2:ENST00000216277.13:ENST00000553357.5:ENST00000553689.5:ENST00000557320.5:ENST00000554130.5:ENST00000557471.5:ENST00000556619.5:ENST00000392990.6:ENST00000555626.5:ENST00000556248.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	42	2	3.36231	3.85065	4.33899	0.0206616	0.00161678	0.110999	0.0369204
chr7	22487771	22487871	3498239	0	-	0.3	(0.28,0.32]	chr7	326613	487	INTRON	INTRON	STEAP1B	ENSG00000105889.16	ENST00000678116.1:ENST00000406890.6:ENST00000404369.8	protein_coding	protein_coding	protein_coding	protein_coding	4	95	2	1.4428	3.850635	6.25847	0.0712927	1.29215e-5	0.185716	0.00266147
chr8	143798214	143798314	4083720	0	-	0.36	(0.35,0.378]	chr8	371193	23	INTRON	INTRON	SCRIB	ENSG00000180900.20	ENST00000320476.7:ENST00000674084.1:ENST00000356994.7:ENST00000526832.5:ENST00000377533.7	protein_coding	protein_coding	protein_coding	protein_coding	2	56	2	2.34278	3.85053	5.35828	0.0129593	0.00135282	0.0991015	0.0336321
chr1	1573379	1573479	360308	0	-	0.34	(0.32,0.35]	chr1	41853	81	INTRON	INTRON	SSU72	ENSG00000160075.12	ENST00000291386.4:ENST00000378725.3:ENST00000359060.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	64	2	2.2664	3.8505	5.4346	0.0199969	4.09682e-4	0.109608	0.0181306
chr1	115663920	115664007	193978	0	+	0.517241	(0.515,0.57]	chr1	21448	4	CDS	CDS:EXON_MRNA	VANGL1	ENSG00000173218.15	ENST00000355485.7:ENST00000369510.8:ENST00000310260.7:ENST00000369509.1	protein_coding	protein_coding	protein_coding	protein_coding	1	37	2	2.65834	3.850295	5.04225	0.0187418	0.00131841	0.117523	0.0331539
chr3	47127862	47127962	1681243	0	-	0.44	(0.408,0.44]	chr3	171624	8	INTRON	INTRON	SETD2	ENSG00000181555.22	ENST00000691544.1:ENST00000638947.2:ENST00000409792.4:ENST00000412450.1	protein_coding	protein_coding	protein_coding	protein_coding	1	43	2	2.51492	3.85014	5.18536	0.0329839	6.17381e-4	0.133816	0.0223951
chr1	54272641	54272741	462418	0	-	0.62	(0.57,1]	chr1	55761	141	INTRON	INTRON	SSBP3	ENSG00000157216.16	ENST00000610401.5:ENST00000357475.9:ENST00000371319.8:ENST00000417664.7:ENST00000533946.6:ENST00000326956.12:ENST00000371320.8:ENST00000426150.5:ENST00000533209.5:ENST00000525990.1:ENST00000528787.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	35	2	2.56996	3.850085	5.13021	0.00499145	1.21664e-4	0.0646039	0.00992813
chr21	5127697	5127797	7424490	0	-	0.48	(0.476,0.515]	chr21	757293	4	SS5_PROX	SS5_PROX:INTRON	ENSG00000280071	ENSG00000280071.4	ENST00000624810.3:ENST00000625036.3:ENST00000620528.5:ENST00000624120.3:ENST00000624648.3:ENST00000623810.2:ENST00000624714.3:ENST00000623390.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	116	2	3.49381	3.850015	4.20622	6.39656e-5	4.01076e-5	0.00661396	0.00539487
chr1	211270042	211270140	305803	0	+	0.44898	(0.44,0.476]	chr1	35244	18	INTRON	INTRON	RCOR3	ENSG00000117625.14	ENST00000534478.5:ENST00000533469.5:ENST00000367006.8:ENST00000419091.7:ENST00000452621.6:ENST00000528926.5:ENST00000528408.5:ENST00000529572.5:ENST00000367005.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	44	2	2.29842	3.84997	5.40152	0.0552483	2.39829e-4	0.165463	0.0136403
chr11	119090864	119090963	4874484	0	+	0.464646	(0.44,0.476]	chr11	455553	2	SS3_PROX	SS3_PROX:INTRON	HMBS	ENSG00000256269.11	ENST00000652429.1:ENST00000545621.5:ENST00000442944.7:ENST00000542729.5:ENST00000537841.5:ENST00000640813.1:ENST00000546302.6:ENST00000542822.5:ENST00000542044.5:ENST00000536813.6:ENST00000544387.5:ENST00000535793.5:ENST00000543090.5:ENST00000649868.1:ENST00000534956.2:ENST00000648026.1:ENST00000650101.1:ENST00000691249.1:ENST00000650307.1:ENST00000686218.1:ENST00000649823.1:ENST00000691144.1:ENST00000535253.5:ENST00000542345.5:ENST00000392841.1:ENST00000546226.5:ENST00000543543.5:ENST00000648488.1:ENST00000648374.1:ENST00000544360.5:ENST00000686690.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	87	2	2.45769	3.8499	5.24211	0.00166589	4.87398e-4	0.0369207	0.0199652
chr11	66791832	66791931	4811820	0	+	0.606061	(0.57,1]	chr11	447962	32	INTRON	INTRON	C11orf80	ENSG00000173715.18	ENST00000524551.5:ENST00000525908.6:ENST00000540737.7:ENST00000527634.5:ENST00000527368.5:ENST00000531400.6:ENST00000642265.1:ENST00000532565.6:ENST00000525449.6:ENST00000360962.10:ENST00000532727.5:ENST00000532089.5:ENST00000526260.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	64	2	3.63273	3.8498650000000003	4.067	2.30559e-5	1.27941e-5	0.00391568	0.00265999
chr14	58300060	58300160	5731208	0	+	0.41	(0.408,0.44]	chr14	544140	2	SS5_PROX	SS5_PROX:INTRON	ARID4A	ENSG00000032219.19	ENST00000348476.7:ENST00000355431.8:ENST00000395168.7:ENST00000431612.5:ENST00000445108.5:ENST00000424658.5:ENST00000431317.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	43	2	2.84077	3.849745	4.85872	0.0132196	0.00221911	0.0940535	0.0435144
chr6	106195772	106195872	3176854	0	-	0.42	(0.408,0.44]	chr6	296154	87	INTRON	INTRON	ATG5	ENSG00000057663.16	ENST00000636437.1:ENST00000636335.1:ENST00000369070.5:ENST00000369076.8:ENST00000635758.2:ENST00000360666.6:ENST00000343245.7:ENST00000475645.1:ENST00000646025.1:ENST00000613993.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	43	2	2.84077	3.849745	4.85872	0.0132196	0.00221911	0.0940535	0.0435144
chr7	23334293	23334392	3502286	0	-	0.414141	(0.408,0.44]	chr7	326829	147	INTRON	INTRON	IGF2BP3	ENSG00000136231.14	ENST00000258729.8:ENST00000619562.4:ENST00000421467.6:ENST00000467592.5:ENST00000497563.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	43	2	2.84077	3.849745	4.85872	0.0132196	0.00221911	0.0940535	0.0435144
chr11	482674	482773	4719231	0	+	0.424242	(0.408,0.44]	chr11	436026	22	INTRON	INTRON	PTDSS2	ENSG00000174915.12	ENST00000532614.5:ENST00000308020.6:ENST00000531520.5:ENST00000526878.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	88	2	3.69572	3.8495549999999996	4.00339	5.37849e-4	7.25052e-5	0.0214775	0.00709818
chr1	11981885	11981961	26443	0	+	0.355263	(0.35,0.378]	chr1	3064	2	UTR5	UTR5:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MFN2	ENSG00000116688.18	ENST00000444836.5:ENST00000674817.1:ENST00000675053.1:ENST00000675298.1:ENST00000675817.1:ENST00000675194.1:ENST00000676369.1:ENST00000412236.2:ENST00000675530.1:ENST00000674548.1:ENST00000675959.1:ENST00000675872.1:ENST00000676426.1:ENST00000674706.1:ENST00000674658.1:ENST00000674910.1:ENST00000675231.1:ENST00000490079.5:ENST00000484391.5:ENST00000497302.1:ENST00000235329.10:ENST00000676293.1:ENST00000675919.1:ENST00000675987.1:ENST00000675512.1:ENST00000675113.1:ENST00000675781.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	152	2	3.26808	3.84955	4.43102	4.82138e-5	1.80095e-5	0.00567088	0.00345191
chr10	11600602	11600702	4555959	0	-	0.35	(0.32,0.35]	chr10	420468	25	INTRON	INTRON	USP6NL	ENSG00000148429.15	ENST00000609104.6:ENST00000606752.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	44	2	3.07975	3.8493200000000005	4.61889	0.0166646	0.00554235	0.102621	0.0674105
chr12	9678494	9678593	5075630	0	+	0.333333	(0.32,0.35]	chr12	479886	39	INTRON	INTRON	CLEC2D	ENSG00000069493.15	ENST00000536355.5:ENST00000487752.1:ENST00000290855.11:ENST00000325960.11:ENST00000261340.11:ENST00000444971.6:ENST00000492359.6:ENST00000479877.5:ENST00000261339.10:ENST00000543300.5:ENST00000545918.5:ENST00000466035.6:ENST00000476198.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	44	2	3.07975	3.8493200000000005	4.61889	0.0166646	0.00554235	0.102621	0.0674105
chr3	17729345	17729445	1630301	0	-	0.35	(0.32,0.35]	chr3	168275	271	INTRON	INTRON	TBC1D5	ENSG00000131374.15	ENST00000253692.11:ENST00000696125.1:ENST00000414318.2:ENST00000429383.8:ENST00000415814.6:ENST00000452492.6:ENST00000412981.5:ENST00000428355.5:ENST00000425944.5:ENST00000430169.5:ENST00000445294.5:ENST00000414349.5:ENST00000443499.6:ENST00000444756.5:ENST00000497531.5:ENST00000443386.5:ENST00000446863.5:ENST00000444471.5:ENST00000481396.5:ENST00000423331.6:ENST00000485432.1:ENST00000471679.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	44	2	3.07975	3.8493200000000005	4.61889	0.0166646	0.00554235	0.102621	0.0674105
chr3	50042208	50042308	1423982	0	+	0.35	(0.32,0.35]	chr3	149994	423	INTRON	INTRON	RBM6	ENSG00000004534.15	ENST00000442092.5:ENST00000443081.5:ENST00000419610.5:ENST00000441115.5:ENST00000422955.5:ENST00000454079.5:ENST00000266022.9:ENST00000425608.5:ENST00000434592.5:ENST00000464013.5:ENST00000483350.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	44	2	3.07975	3.8493200000000005	4.61889	0.0166646	0.00554235	0.102621	0.0674105
chr10	77918631	77918731	4654713	0	-	0.44	(0.408,0.44]	chr10	428776	62	INTRON	INTRON	DLG5	ENSG00000151208.17	ENST00000372391.7	protein_coding	protein_coding	protein_coding	protein_coding	2	59	2	2.57295	3.849315	5.12568	0.00640423	7.90919e-4	0.0694534	0.0258324
chr1	37818965	37819063	424868	0	-	0.469388	(0.44,0.476]	chr1	51456	11	INTRON	INTRON	MTF1	ENSG00000188786.10	ENST00000373036.5	protein_coding	protein_coding	protein_coding	protein_coding	1	44	2	3.07862	3.84908	4.61954	0.0060153	0.00506805	0.0674604	0.0646039
chr18	12315045	12315145	6874837	0	+	0.28	[0,0.28]	chr18	681093	36	INTRON	INTRON	TUBB6	ENSG00000176014.13	ENST00000590693.5:ENST00000590103.5:ENST00000591909.5:ENST00000317702.10:ENST00000417736.2:ENST00000586810.5:ENST00000586653.5:ENST00000590388.5:ENST00000592683.5:ENST00000590967.5:ENST00000591208.1:ENST00000591463.1:ENST00000586691.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	67	2	2.10688	3.84905	5.59122	0.0307985	0.00247649	0.143385	0.0446195
chr22	17897774	17897871	7549393	0	-	0.381443	(0.378,0.408]	chr22	771718	4	INTRON	INTRON	MICAL3	ENSG00000243156.9	ENST00000441493.7:ENST00000672019.1:ENST00000400561.6:ENST00000495076.5:ENST00000414725.6:ENST00000383094.7:ENST00000585038.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	41	2	3.1136	3.848935	4.58427	0.0128325	0.00443339	0.0926667	0.061054
chr8	56072003	56072102	3954723	0	-	0.494949	(0.476,0.515]	chr8	362719	23	UTR3	UTR3:EXON_MRNA:INTRON	RPS20	ENSG00000008988.11	ENST00000618656.2:ENST00000676461.1:ENST00000519807.5:ENST00000678039.1:ENST00000676918.1:ENST00000678683.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	88	2	3.08268	3.848935	4.61519	0.00528365	1.82084e-4	0.0656295	0.0122264
chr3	14963391	14963491	1371939	0	+	0.36	(0.35,0.378]	chr3	144608	5	INTRON	INTRON	NR2C2	ENSG00000177463.16	ENST00000425241.6:ENST00000413118.5:ENST00000435454.5:ENST00000323373.10:ENST00000475707.5:ENST00000393102.7:ENST00000437120.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	58	2	2.04358	3.8488749999999996	5.65417	0.0329533	4.33402e-4	0.145171	0.0190829
chr2	108742265	108742364	847645	0	+	0.474747	(0.44,0.476]	chr2	94821	12	INTRON	INTRON	RANBP2	ENSG00000153201.16	ENST00000283195.11	protein_coding	protein_coding	protein_coding	protein_coding	4	73	2	1.92704	3.8488249999999997	5.77061	0.0128054	1.44264e-4	0.0990564	0.0109794
chr11	129951858	129951956	5052458	0	-	0.326531	(0.32,0.35]	chr11	476907	34	INTRON	INTRON	PRDM10	ENSG00000170325.16	ENST00000358825.9:ENST00000360871.8:ENST00000528746.5:ENST00000527581.5:ENST00000531431.1	protein_coding	protein_coding	protein_coding	protein_coding	1	44	2	2.56618	3.8487050000000003	5.13123	0.0274185	0.00394704	0.136498	0.0548259
chr2	200923736	200923836	1310478	0	-	0.35	(0.32,0.35]	chr2	137142	21	INTRON	INTRON	ORC2	ENSG00000115942.9	ENST00000234296.7:ENST00000464147.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	44	2	2.56618	3.8487050000000003	5.13123	0.0274185	0.00394704	0.136498	0.0548259
chr3	196486801	196486898	1899851	0	-	0.597938	(0.57,1]	chr3	190248	26	INTRON	INTRON	RNF168	ENSG00000163961.4	ENST00000318037.3:ENST00000437070.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	52	2	2.8972	3.848655	4.80011	6.07135e-4	6.94474e-5	0.0226059	0.00690574
chr7	75413565	75413662	3338223	0	+	0.412371	(0.408,0.44]	chr7	310814	9	EXON_LNCRNA	EXON_LNCRNA:INTRON	NSUN5P1	ENSG00000223705.10	ENST00000691741.1:ENST00000687920.1:ENST00000393633.6:ENST00000687621.1:ENST00000689022.1:ENST00000691865.1:ENST00000688076.1:ENST00000693166.1:ENST00000457988.5:ENST00000689132.1:ENST00000691132.1:ENST00000692954.1:ENST00000455158.5:ENST00000421140.6:ENST00000693244.1:ENST00000422386.5:ENST00000464979.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	4	142	2	3.01171	3.848535	4.68536	2.8363e-4	1.09683e-6	0.015495	5.99786e-4
chr12	24900916	24901015	5297427	0	-	0.313131	(0.28,0.32]	chr12	503871	61	INTRON	INTRON	BCAT1	ENSG00000060982.15	ENST00000261192.12:ENST00000538118.5:ENST00000342945.9:ENST00000539282.5:ENST00000539780.5:ENST00000544418.1:ENST00000546285.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	63	2	2.70831	3.848515	4.98872	0.00838468	0.00378444	0.0774402	0.0562562
chr2	151461789	151461877	893752	0	+	0.284091	(0.28,0.32]	chr2	99019	1	SS3_PROX	SS3_PROX:INTRON	RIF1	ENSG00000080345.18	ENST00000453091.6:ENST00000428287.6:ENST00000444746.7:ENST00000243326.9:ENST00000430328.6	protein_coding	protein_coding	protein_coding	protein_coding	2	68	2	2.29708	3.84835	5.39962	0.0195087	7.06751e-4	0.109483	0.0241881
chr1	67428837	67428935	477621	0	-	0.397959	(0.378,0.408]	chr1	57498	22	INTRON	INTRON	SERBP1	ENSG00000142864.15	ENST00000370994.8:ENST00000361219.11:ENST00000370995.6:ENST00000370990.5:ENST00000490406.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	41	2	2.63247	3.8482950000000002	5.06412	0.0215745	0.0030522	0.123836	0.0493883
chr2	24499488	24499588	709339	0	+	0.25	[0,0.28]	chr2	82200	69	INTRON	INTRON	NCOA1	ENSG00000084676.16	ENST00000348332.8:ENST00000496333.5:ENST00000406961.5:ENST00000469850.5:ENST00000405141.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	54	2	2.49527	3.8479900000000002	5.20071	0.0436497	0.00261806	0.14882	0.0470772
chr21	15020551	15020651	7431817	0	-	0.25	[0,0.28]	chr21	757984	57	INTRON	INTRON	NRIP1	ENSG00000180530.11	ENST00000400202.5:ENST00000318948.7:ENST00000400199.5:ENST00000638122.1:ENST00000637963.1:ENST00000637630.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	54	2	2.49527	3.8479900000000002	5.20071	0.0436497	0.00261806	0.14882	0.0470772
chr1	185297549	185297646	603496	0	-	0.257732	[0,0.28]	chr1	71866	13	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	IVNS1ABP	ENSG00000116679.16	ENST00000367498.8:ENST00000480769.5:ENST00000459929.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	50	2	2.43761	3.84788	5.25815	0.0423864	0.0066548	0.161744	0.0703807
chr7	99398711	99398810	3583218	0	-	0.494949	(0.476,0.515]	chr7	333733	3	INTRON	INTRON	PDAP1	ENSG00000106244.13	ENST00000350498.8:ENST00000426447.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	42	2	2.38442	3.8475	5.31058	0.0417472	9.15544e-4	0.161736	0.0278396
chr20	6019219	6019318	7230681	0	+	0.313131	(0.28,0.32]	chr20	734840	33	INTRON	INTRON	CRLS1	ENSG00000088766.12	ENST00000452938.5:ENST00000378863.9:ENST00000378868.4:ENST00000489345.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	62	2	2.13651	3.84748	5.55845	0.0265696	0.00141854	0.134088	0.0340865
chr5	127531573	127531670	2479938	0	+	0.350515	(0.35,0.378]	chr5	236798	8	INTRON	INTRON	PRRC1	ENSG00000164244.21	ENST00000296666.13:ENST00000442138.6:ENST00000512635.2	protein_coding	protein_coding	protein_coding	protein_coding	1	42	2	2.6498	3.84746	5.04512	0.0210137	0.00393262	0.122348	0.0548259
chr8	47938081	47938178	3945534	0	-	0.536082	(0.515,0.57]	chr8	361933	12	INTRON	INTRON	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7:ENST00000535375.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	58	2	2.36534	3.847455	5.32957	0.00404547	4.06834e-4	0.0578376	0.0185763
chr7	152092690	152092790	3450186	0	+	0.33	(0.32,0.35]	chr7	322451	129	INTRON	INTRON	GALNT11	ENSG00000178234.13	ENST00000430044.7:ENST00000482812.1:ENST00000431668.1:ENST00000446096.5:ENST00000447778.5:ENST00000423337.5:ENST00000434507.5:ENST00000415421.5:ENST00000422997.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	46	2	3.3273	3.847425	4.36755	0.0300552	0.00218894	0.129138	0.0435144
chr1	109397340	109397440	521017	0	-	0.58	(0.57,1]	chr1	61210	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SORT1	ENSG00000134243.12	ENST00000256637.8:ENST00000471996.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	50	2	1.79978	3.84739	5.895	0.0199509	6.04397e-7	0.109608	4.21585e-4
chr12	102132936	102133036	5204987	0	+	0.26	[0,0.28]	chr12	492808	85	INTRON	INTRON	PARPBP	ENSG00000185480.12	ENST00000327680.7:ENST00000541394.5:ENST00000543784.5:ENST00000392909.7:ENST00000537257.5:ENST00000392911.6:ENST00000541668.5:ENST00000392914.3:ENST00000457614.6:ENST00000417507.6:ENST00000412715.3:ENST00000535811.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	49	2	2.74901	3.8473100000000002	4.94561	0.0188843	0.0150263	0.118148	0.0994339
chr16	4810869	4810969	6438639	0	-	0.49	(0.476,0.515]	chr16	620137	3	SS5_PROX	SS5_PROX:INTRON	GLYR1	ENSG00000140632.17	ENST00000321919.14:ENST00000436648.9:ENST00000588732.5:ENST00000589389.5:ENST00000587936.5:ENST00000591451.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	87	2	3.64127	3.8472999999999997	4.05333	6.42302e-4	5.62932e-5	0.0231685	0.00613846
chr1	50956371	50956471	452217	0	-	0.26	[0,0.28]	chr1	54267	980	INTRON	INTRON	FAF1	ENSG00000185104.21	ENST00000396153.7:ENST00000487898.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	49	2	2.69187	3.84725	5.00263	0.0221271	0.013055	0.123903	0.093385
chr11	93682185	93682282	4847981	0	+	0.278351	[0,0.28]	chr11	452101	23	INTRON	INTRON	CEP295	ENSG00000166004.15	ENST00000325212.11	protein_coding	protein_coding	protein_coding	protein_coding	1	49	2	2.69187	3.84725	5.00263	0.0221271	0.013055	0.123903	0.093385
chr2	187548123	187548223	1289463	0	-	0.23	[0,0.28]	chr2	135627	31	INTRON	INTRON	TFPI	ENSG00000003436.16	ENST00000233156.9:ENST00000409676.5:ENST00000339091.8:ENST00000421427.5:ENST00000437725.5:ENST00000453013.5:ENST00000417013.5:ENST00000420747.1	protein_coding	protein_coding	protein_coding	protein_coding	1	49	2	2.69187	3.84725	5.00263	0.0221271	0.013055	0.123903	0.093385
chr6	127286070	127286149	2958566	0	+	0.278481	[0,0.28]	chr6	278165	1	CDS_SOLITARY	CDS_SOLITARY:CDS_START:CDS_STOP:CDS:UTR5:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	RNF146	ENSG00000118518.17	ENST00000476956.5:ENST00000609447.5:ENST00000356799.6:ENST00000368314.6:ENST00000477776.5:ENST00000609944.5:ENST00000608991.5:ENST00000610153.1:ENST00000489534.5:ENST00000610162.5:ENST00000608340.5:ENST00000480444.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	49	2	2.69187	3.84725	5.00263	0.0221271	0.013055	0.123903	0.093385
chr7	135955229	135955329	3649251	0	-	0.25	[0,0.28]	chr7	339214	32	INTRON	INTRON	MTPN	ENSG00000105887.11	ENST00000393085.4:ENST00000435723.1	protein_coding	protein_coding	protein_coding	protein_coding	1	49	2	2.69187	3.84725	5.00263	0.0221271	0.013055	0.123903	0.093385
chr5	65970733	65970833	2371289	0	+	0.42	(0.408,0.44]	chr5	228480	17	INTRON	INTRON	ERBIN	ENSG00000112851.15	ENST00000380943.6:ENST00000507490.1:ENST00000416865.6:ENST00000380935.5:ENST00000284037.10:ENST00000380938.6:ENST00000511297.5:ENST00000506030.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	64	2	2.08376	3.84722	5.61068	0.0129886	3.21002e-4	0.0991656	0.0165409
chr14	19337079	19337179	5832400	0	-	0.35	(0.32,0.35]	chr14	553824	1	SS5_PROX	SS5_PROX:INTRON	DUXAP10	ENSG00000244306.11	ENST00000648085.1:ENST00000614614.4:ENST00000612696.4:ENST00000619784.4:ENST00000616922.4:ENST00000624585.3:ENST00000549065.5:ENST00000610531.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	2	64	2	2.30731	3.8470750000000002	5.38684	0.0176772	5.01164e-4	0.10525	0.020217099999999998
chr1	183493747	183493847	273720	0	+	0.55	(0.515,0.57]	chr1	32019	195	INTRON	INTRON	SMG7	ENSG00000116698.22	ENST00000440812.7:ENST00000367537.7:ENST00000688051.1:ENST00000685780.1:ENST00000508461.5:ENST00000347615.6:ENST00000419169.5:ENST00000444547.6:ENST00000507469.5:ENST00000515829.6:ENST00000367538.1:ENST00000502375.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	67	2	1.84511	3.84706	5.84901	0.0167182	3.33916e-5	0.110511	0.00487221
chr15	80084715	80084815	6071289	0	+	0.37	(0.35,0.378]	chr15	578322	90	INTRON	INTRON	ZFAND6	ENSG00000086666.19	ENST00000613266.4:ENST00000561060.5:ENST00000559157.5:ENST00000261749.11:ENST00000561012.5:ENST00000564367.5:ENST00000558494.5:ENST00000618205.4:ENST00000560470.5:ENST00000560228.5:ENST00000559835.5:ENST00000559775.5:ENST00000558688.5:ENST00000560976.5:ENST00000560392.5:ENST00000558390.5:ENST00000558272.5:ENST00000557793.1:ENST00000616533.4:ENST00000558087.5:ENST00000558997.5:ENST00000558724.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	45	2	2.66547	3.846895	5.02832	0.0233639	0.00156444	0.118323	0.0365263
chr3	47896502	47896601	1685559	0	-	0.353535	(0.35,0.378]	chr3	172201	38	INTRON	INTRON	MAP4	ENSG00000047849.22	ENST00000429422.5:ENST00000683076.1:ENST00000395734.7:ENST00000426837.6:ENST00000360240.10:ENST00000383736.3:ENST00000482752.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	45	2	2.66547	3.846895	5.02832	0.0233639	0.00156444	0.118323	0.0365263
chr8	90347842	90347942	3793572	0	+	0.37	(0.35,0.378]	chr8	351786	1007	INTRON	INTRON	LINC00534	ENSG00000253394.7	ENST00000662145.1:ENST00000655523.1:ENST00000517400.6:ENST00000658299.1:ENST00000663329.1:ENST00000658342.1:ENST00000523283.6:ENST00000655219.1:ENST00000662692.1:ENST00000667296.1:ENST00000667565.1:ENST00000523406.2:ENST00000659030.1:ENST00000653734.1:ENST00000654785.1:ENST00000524361.5:ENST00000668745.1:ENST00000666641.2:ENST00000661519.1:ENST00000671657.1:ENST00000655123.1:ENST00000663098.1:ENST00000670903.1:ENST00000654946.1	lncRNA	lncRNA	lncRNA	lncRNA	1	45	2	2.66547	3.846895	5.02832	0.0233639	0.00156444	0.118323	0.0365263
chr21	29066040	29066127	7436975	0	-	0.321839	(0.32,0.35]	chr21	758526	6	INTRON	INTRON	CCT8	ENSG00000156261.13	ENST00000540844.5:ENST00000470450.5:ENST00000286788.9:ENST00000626972.2:ENST00000431234.1:ENST00000484403.5:ENST00000481059.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	77	2	1.96288	3.84686	5.73084	0.0239991	1.07676e-4	0.119664	0.00878438
chrX	45094055	45094155	7650847	0	+	0.41	(0.408,0.44]	chrX	782860	28	INTRON	INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1:ENST00000675525.1:ENST00000414389.5:ENST00000675546.1:ENST00000431196.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	42	2	2.3975	3.84681	5.29612	0.040266	0.00113523	0.161534	0.0307488
chr10	119055453	119055551	4704652	0	-	0.367347	(0.35,0.378]	chr10	433947	38	INTRON	INTRON	EIF3A	ENSG00000107581.13	ENST00000369144.8:ENST00000541549.2	protein_coding	protein_coding	protein_coding	protein_coding	3	67	2	2.20096	3.8467700000000002	5.49258	0.0087123	8.19894e-4	0.0844834	0.0264086
chr17	82908886	82908985	6695813	0	+	0.454545	(0.44,0.476]	chr17	655016	9	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TBCD	ENSG00000141556.22	ENST00000682479.1:ENST00000682722.1:ENST00000684464.1:ENST00000684544.1:ENST00000681983.1:ENST00000684361.1:ENST00000683184.1:ENST00000683282.1:ENST00000684408.1:ENST00000355528.9:ENST00000683444.1:ENST00000684776.1:ENST00000683041.1:ENST00000684760.1:ENST00000684349.1:ENST00000682213.1:ENST00000539345.6:ENST00000684000.1:ENST00000684188.1:ENST00000684429.1:ENST00000682610.1:ENST00000683821.1:ENST00000682654.1:ENST00000576160.6:ENST00000571712.5:ENST00000576996.5:ENST00000574801.5:ENST00000683584.1:ENST00000682099.1:ENST00000684559.1:ENST00000571316.5:ENST00000576760.5:ENST00000572984.5:ENST00000683839.1:ENST00000574975.5:ENST00000572953.5:ENST00000571796.5:ENST00000682315.1:ENST00000574422.1:ENST00000682225.1:ENST00000576677.6:ENST00000571618.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	53	2	2.54944	3.84661	5.14378	0.00591346	0.00184943	0.0694038	0.0388609
chr10	21699015	21699115	4406080	0	+	0.48	(0.476,0.515]	chr10	406537	20	INTRON	INTRON	MLLT10	ENSG00000078403.17	ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000651298.1:ENST00000377059.7:ENST00000651382.1:ENST00000438473.6:ENST00000420525.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	42	2	2.69967	3.846545	4.99342	0.0195838	0.00139274	0.109483	0.0341261
chr11	129893385	129893485	5051885	0	-	0.49	(0.476,0.515]	chr11	476781	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NFRKB	ENSG00000170322.15	ENST00000682444.1:ENST00000446488.7:ENST00000524746.5:ENST00000531755.5:ENST00000530278.5:ENST00000529319.5:ENST00000532225.5:ENST00000526884.1:ENST00000531318.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	42	2	2.69967	3.846545	4.99342	0.0195838	0.00139274	0.109483	0.0341261
chr14	58268929	58269028	5731154	0	+	0.494949	(0.476,0.515]	chr14	544117	9	INTRON	INTRON	PSMA3	ENSG00000100567.13	ENST00000216455.9:ENST00000557087.5:ENST00000412908.6:ENST00000557508.5:ENST00000553677.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	42	2	2.69967	3.846545	4.99342	0.0195838	0.00139274	0.109483	0.0341261
chr15	72546454	72546553	6059884	0	+	0.454545	(0.44,0.476]	chr15	576870	11	INTRON	INTRON	ARIH1	ENSG00000166233.15	ENST00000379887.9:ENST00000570085.5:ENST00000564062.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	53	2	2.39003	3.8464650000000002	5.3029	0.0106488	0.00102616	0.0915714	0.029231300000000002
chr5	37432327	37432427	2340921	0	+	0.38	(0.378,0.408]	chr5	226227	354	INTRON	INTRON	WDR70	ENSG00000082068.9	ENST00000504564.1:ENST00000511906.5:ENST00000265107.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	44	2	2.84663	3.84645	4.84627	0.0133954	0.00254319	0.0946278	0.0465056
chr10	46017385	46017481	4608809	0	-	0.5	(0.476,0.515]	chr10	424574	3	INTRON	INTRON	NCOA4	ENSG00000266412.6	ENST00000581486.6:ENST00000585132.5:ENST00000585056.5:ENST00000583565.5:ENST00000580070.5:ENST00000578454.5:ENST00000579039.2	protein_coding	protein_coding	protein_coding	protein_coding	1	43	2	3.44784	3.846425	4.24501	0.0247713	0.00113238	0.12011	0.0308465
chr15	41430155	41430255	6005492	0	+	0.49	(0.476,0.515]	chr15	571377	125	INTRON	INTRON	RTF1	ENSG00000137815.15	ENST00000558298.5:ENST00000389629.9:ENST00000462276.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	43	2	3.44784	3.846425	4.24501	0.0247713	0.00113238	0.12011	0.0308465
chr3	185276586	185276686	1883732	0	-	0.5	(0.476,0.515]	chr3	188353	227	INTRON	INTRON	EHHADH	ENSG00000113790.11	ENST00000465178.1	protein_coding	processed_transcript	protein_coding	processed_transcript	1	43	2	3.44784	3.846425	4.24501	0.0247713	0.00113238	0.12011	0.0308465
chr4	66740	66840	1905424	0	+	0.33	(0.32,0.35]	chr4	191003	62	INTRON	INTRON	ZNF595	ENSG00000272602.6	ENST00000608255.2:ENST00000609518.5:ENST00000509152.3:ENST00000610261.6	protein_coding	protein_coding	protein_coding	protein_coding	5	223	2	3.46069	3.846265	4.23184	1.79264e-5	3.06354e-6	0.00323282	0.00124028
chr8	98044629	98044727	3995406	0	-	0.387755	(0.378,0.408]	chr8	365924	3	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	RPL30	ENSG00000156482.11	ENST00000518164.5:ENST00000518850.5:ENST00000287038.8:ENST00000396070.6:ENST00000521291.5:ENST00000523172.5:ENST00000521726.1:ENST00000517489.1:ENST00000520998.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	148	2	3.2115	3.84622	4.48094	1.09972e-4	4.61323e-6	0.00943606	0.00144728
chr19	29971627	29971727	7047849	0	+	0.24	[0,0.28]	chr19	702668	4	SS5_PROX	SS5_PROX:INTRON	URI1	ENSG00000105176.18	ENST00000360605.8:ENST00000570564.5:ENST00000574233.5:ENST00000392271.6:ENST00000574110.5:ENST00000574666.5:ENST00000576442.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	55	2	2.20927	3.84617	5.48307	0.0794763	9.62922e-4	0.19979	0.0285195
chr6	15408324	15408424	2824571	0	+	0.26	[0,0.28]	chr6	265198	337	INTRON	INTRON	JARID2	ENSG00000008083.14	ENST00000341776.7:ENST00000397311.4	protein_coding	protein_coding	protein_coding	protein_coding	1	55	2	2.20927	3.84617	5.48307	0.0794763	9.62922e-4	0.19979	0.0285195
chr1	86992526	86992626	154374	0	+	0.49	(0.476,0.515]	chr1	16969	171	INTRON	INTRON	HS2ST1	ENSG00000153936.18	ENST00000370550.10:ENST00000370551.8:ENST00000687893.1:ENST00000693745.1:ENST00000689904.1:ENST00000690674.1:ENST00000591456.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	59	2	2.69886	3.84614	4.99342	0.00385209	0.00139274	0.0542786	0.0341261
chr16	82163293	82163389	6531465	0	-	0.333333	(0.32,0.35]	chr16	632776	6	INTRON	INTRON	MPHOSPH6	ENSG00000135698.10	ENST00000563100.5:ENST00000258169.9:ENST00000563504.5:ENST00000568016.1:ENST00000569599.5:ENST00000566748.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	48	2	2.89743	3.846125	4.79482	0.0127608	0.00447781	0.0926667	0.0610799
chr20	49686687	49686787	7353356	0	-	0.42	(0.408,0.44]	chr20	749846	296	INTRON	INTRON	B4GALT5	ENSG00000158470.5	ENST00000371711.4	protein_coding	protein_coding	protein_coding	protein_coding	4	140	2	3.31506	3.84605	4.37704	3.05782e-5	1.75902e-5	0.00441979	0.0033802
chr6	111272013	111272113	2939906	0	+	0.49	(0.476,0.515]	chr6	276923	50	UTR3	UTR3:EXON_MRNA:INTRON	MFSD4B	ENSG00000173214.7	ENST00000671876.2:ENST00000672750.1:ENST00000672191.1:ENST00000671883.1:ENST00000673446.1:ENST00000444259.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	53	2	2.48551	3.84598	5.20645	0.00756632	0.00136049	0.0773151	0.0336321
chr1	226174695	226174795	646938	0	-	0.48	(0.476,0.515]	chr1	76667	83	INTRON	INTRON	ACBD3	ENSG00000182827.9	ENST00000366812.6	protein_coding	protein_coding	protein_coding	protein_coding	2	53	2	2.43242	3.845935	5.25945	0.0091895	0.00111445	0.0855292	0.0306328
chr13	95241998	95242097	5639279	0	-	0.424242	(0.408,0.44]	chr13	537157	68	INTRON	INTRON	ABCC4	ENSG00000125257.16	ENST00000645237.2:ENST00000643051.1:ENST00000643842.1:ENST00000646439.1:ENST00000643816.1:ENST00000536256.3:ENST00000643556.1:ENST00000629385.1:ENST00000642524.1:ENST00000645532.1:ENST00000644471.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	53	2	2.49983	3.8459250000000003	5.19202	0.00713527	0.0016671	0.0756118	0.0369207
chr1	198233734	198233834	288427	0	+	0.31	(0.28,0.32]	chr1	33166	7	INTRON	INTRON	NEK7	ENSG00000151414.15	ENST00000442588.5:ENST00000367385.9:ENST00000538004.5:ENST00000367383.5:ENST00000544035.5:ENST00000417895.1:ENST00000391974.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	48	2	3.26551	3.845905	4.4263	0.0330296	0.0030714	0.133816	0.0509893
chr5	113560779	113560879	2454342	0	+	0.32	(0.28,0.32]	chr5	235225	3	SS3_PROX	SS3_PROX:INTRON	YTHDC2	ENSG00000047188.16	ENST00000161863.9:ENST00000503857.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	48	2	3.26551	3.845905	4.4263	0.0330296	0.0030714	0.133816	0.0509893
chr16	85592427	85592527	6415756	0	+	0.58	(0.57,1]	chr16	615470	357	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	12	215	2	3.62317	3.845895	4.06862	2.93659e-9	2.87361e-9	1.56744e-5	1.12637e-5
chr10	12182054	12182151	4557970	0	-	0.453608	(0.44,0.476]	chr10	420684	12	INTRON	INTRON	NUDT5	ENSG00000165609.13	ENST00000491614.6:ENST00000378937.7:ENST00000537776.5:ENST00000378952.7:ENST00000378940.7:ENST00000378927.7:ENST00000444732.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	41	2	3.25801	3.84589	4.43377	0.0162803	0.00248185	0.101453	0.0460771
chr20	37199946	37200046	7266342	0	+	0.46	(0.44,0.476]	chr20	738404	1	SS3_PROX	SS3_PROX:INTRON	RPN2	ENSG00000118705.17	ENST00000456102.5:ENST00000373622.9:ENST00000373632.8:ENST00000237530.11:ENST00000462163.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	41	2	3.25801	3.84589	4.43377	0.0162803	0.00248185	0.101453	0.0460771
chr3	39389922	39390019	1401691	0	+	0.42268	(0.408,0.44]	chr3	147164	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SLC25A38	ENSG00000144659.13	ENST00000650617.1:ENST00000431510.1:ENST00000645630.1:ENST00000648579.1:ENST00000642683.1:ENST00000645280.1:ENST00000643672.1:ENST00000642978.1:ENST00000642442.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	53	2	2.44674	3.845875	5.24501	0.00868283	0.00137378	0.0842798	0.0336718
chr1	230103430	230103530	334441	0	+	0.47	(0.44,0.476]	chr1	38930	115	INTRON	INTRON	GALNT2	ENSG00000143641.10	ENST00000494106.1:ENST00000366672.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	40	2	2.66433	3.8456799999999998	5.02703	0.0194358	0.00278015	0.119831	0.0469265
chr2	37017213	37017313	1095105	0	-	0.46	(0.44,0.476]	chr2	117292	28	INTRON	INTRON	HEATR5B	ENSG00000008869.12	ENST00000233099.6	protein_coding	protein_coding	protein_coding	protein_coding	1	40	2	2.66433	3.8456799999999998	5.02703	0.0194358	0.00278015	0.119831	0.0469265
chr1	247209990	247210090	684099	0	-	0.37	(0.35,0.378]	chr1	80206	6	INTRON	INTRON	ZNF731P	ENSG00000227671.4	ENST00000606173.1:ENST00000606454.1:ENST00000606212.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	1	46	2	2.32443	3.84558	5.3667299999999996	0.0544216	3.99274e-4	0.164972	0.0179401
chr4	34322231	34322331	2125528	0	-	0.38	(0.378,0.408]	chr4	209578	526	INTRON	INTRON	LINC02484	ENSG00000248685.6	ENST00000658479.1	lncRNA	lncRNA	lncRNA	lncRNA	1	42	2	3.27907	3.84538	4.41169	0.0199606	0.0023379	0.109608	0.0442989
chr1	15638534	15638634	33697	0	+	0.45	(0.44,0.476]	chr1	4104	1	SS5_PROX	SS5_PROX:INTRON	DDI2	ENSG00000197312.12	ENST00000480945.6:ENST00000320153.10:ENST00000483899.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	64	2	2.38763	3.8452650000000004	5.3029	0.00394089	0.00102616	0.0573041	0.029231300000000002
chr19	21401331	21401431	7040863	0	+	0.28	[0,0.28]	chr19	702018	25	INTRON	INTRON	ZNF493	ENSG00000196268.12	ENST00000596302.5:ENST00000392288.7:ENST00000355504.4:ENST00000594390.5:ENST00000596815.1:ENST00000339914.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	49	2	2.80396	3.845105	4.88625	0.0173315	0.0161429	0.109464	0.104099
chr21	22257108	22257208	7384939	0	+	0.19	[0,0.28]	chr21	752727	439	INTRON	INTRON	ENSG00000226043	ENSG00000226043.2	ENST00000667099.1:ENST00000654607.1:ENST00000444130.1	lncRNA	lncRNA	lncRNA	lncRNA	1	49	2	2.80396	3.845105	4.88625	0.0173315	0.0161429	0.109464	0.104099
chr6	169715274	169715342	3267251	0	-	0.264706	[0,0.28]	chr6	303295	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PHF10	ENSG00000130024.15	ENST00000339209.9:ENST00000366780.8:ENST00000621772.4:ENST00000480008.1:ENST00000612128.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	49	2	2.80396	3.845105	4.88625	0.0173315	0.0161429	0.109464	0.104099
chr5	10698971	10699071	2567704	0	-	0.5	(0.476,0.515]	chr5	246124	150	INTRON	INTRON	DAP	ENSG00000112977.16	ENST00000230895.11:ENST00000432074.2:ENST00000514882.5:ENST00000508253.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	42	2	2.63168	3.8450749999999996	5.05847	0.0237106	0.00108081	0.118716	0.0300133
chr8	100926537	100926636	4005713	0	-	0.484848	(0.476,0.515]	chr8	366658	11	INTRON	INTRON	YWHAZ	ENSG00000164924.18	ENST00000395958.6:ENST00000395957.6:ENST00000457309.2:ENST00000395956.7:ENST00000353245.7:ENST00000521309.5:ENST00000522542.5:ENST00000522819.5:ENST00000395953.6:ENST00000395948.6:ENST00000395951.7:ENST00000419477.6:ENST00000521607.5:ENST00000480304.5:ENST00000518736.5:ENST00000517727.5:ENST00000521328.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	55	2	2.06491	3.845065	5.62522	0.0304733	2.4907e-4	0.143385	0.0145812
chrX	44942183	44942283	7649292	0	+	0.5	(0.476,0.515]	chrX	782726	678	INTRON	INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000675440.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000621147.5:ENST00000475233.1:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	87	2	3.83511	3.8449799999999996	3.85485	2.63754e-4	1.63076e-4	0.0149561	0.0109774
chr6	149602299	149602392	3245654	0	-	0.44086	(0.44,0.476]	chr6	301570	1	INTRON	INTRON	KATNA1	ENSG00000186625.14	ENST00000335643.12:ENST00000367411.7:ENST00000335647.9:ENST00000494504.5:ENST00000481905.5:ENST00000470620.1:ENST00000444282.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	41	2	2.49112	3.8449600000000004	5.1988	0.0315968	0.00151532	0.144381	0.0352794
chr7	137981766	137981866	3655538	0	-	0.32	(0.28,0.32]	chr7	339370	480	INTRON	INTRON	CREB3L2	ENSG00000182158.16	ENST00000330387.11:ENST00000456390.5:ENST00000452463.5	protein_coding	protein_coding	protein_coding	protein_coding	1	46	2	3.02632	3.844955	4.66359	0.0193496	0.0071944	0.108861	0.0756118
chr17	44457888	44457987	6780377	0	-	0.484848	(0.476,0.515]	chr17	668671	121	INTRON	INTRON	GPATCH8	ENSG00000186566.13	ENST00000591680.6:ENST00000335500.8:ENST00000587228.5:ENST00000585614.1:ENST00000590041.5:ENST00000592746.5:ENST00000586037.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	42	2	2.7646	3.844945	4.92529	0.0162075	0.00180221	0.101453	0.0392772
chr2	70246910	70247009	1152452	0	-	0.222222	[0,0.28]	chr2	123109	104	INTRON	INTRON	C2orf42:TIA1	ENSG00000115998.8:ENSG00000116001.17	ENST00000470096.1:ENST00000415783.6:ENST00000433529.7:ENST00000282574.8:ENST00000445587.5:ENST00000416149.6:ENST00000474809.6:ENST00000477044.6:ENST00000496452.5:ENST00000481650.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	49	2	2.63238	3.8449299999999997	5.05748	0.0259691	0.0113653	0.133676	0.0886611
chr20	34886083	34886183	7261080	0	+	0.22	[0,0.28]	chr20	737645	27	INTRON	INTRON	ACSS2	ENSG00000131069.20	ENST00000481971.5:ENST00000488172.5:ENST00000497927.5:ENST00000481284.5:ENST00000475459.6:ENST00000484354.1:ENST00000480274.1:ENST00000477932.5:ENST00000473172.5:ENST00000493805.6:ENST00000480978.5:ENST00000360596.7:ENST00000467019.5:ENST00000253382.5:ENST00000476922.5:ENST00000464399.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	49	2	2.63238	3.8449299999999997	5.05748	0.0259691	0.0113653	0.133676	0.0886611
chr1	20751778	20751877	389503	0	-	0.323232	(0.32,0.35]	chr1	46531	15	INTRON	INTRON	HP1BP3	ENSG00000127483.19	ENST00000438032.6:ENST00000312239.10:ENST00000375003.6:ENST00000419948.5	protein_coding	protein_coding	protein_coding	protein_coding	2	59	2	2.67068	3.844925	5.01917	0.0055659	0.00406276	0.0648867	0.0578984
chr5	104131199	104131299	2441727	0	+	0.27	[0,0.28]	chr5	234410	259	INTRON	INTRON	LINC02163	ENSG00000251026.2	ENST00000662211.1:ENST00000666145.1	lncRNA	lncRNA	lncRNA	lncRNA	3	80	2	2.09841	3.8448149999999996	5.59122	0.0151026	0.00247649	0.108435	0.0446195
chr17	57307339	57307439	6633261	0	+	0.45	(0.44,0.476]	chr17	648017	122	INTRON	INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000581776.5:ENST00000674961.1:ENST00000582453.5:ENST00000675656.1:ENST00000322684.7:ENST00000579590.5:ENST00000676073.1:ENST00000675822.1:ENST00000442934.6:ENST00000579180.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	57	2	2.19078	3.84478	5.49878	0.0226089	1.52058e-4	0.117489	0.0106137
chr21	44960767	44960866	7417669	0	+	0.383838	(0.378,0.408]	chr21	756231	2	INTRON	INTRON	SLX9	ENSG00000160256.13	ENST00000397826.7:ENST00000458015.1:ENST00000291634.11:ENST00000479127.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	59	2	2.35103	3.84466	5.33829	0.014158	3.59275e-4	0.0959618	0.0169207
chr7	138491792	138491892	3434956	0	+	0.38	(0.378,0.408]	chr7	319959	301	INTRON	INTRON	TRIM24	ENSG00000122779.18	ENST00000343526.9:ENST00000415680.6:ENST00000497516.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	65	2	2.31181	3.8446	5.37739	0.00548372	0.0010014	0.0671431	0.0288906
chr19	2777097	2777195	7116698	0	-	0.571429	(0.57,1]	chr19	715508	65	INTRON	INTRON	SGTA	ENSG00000104969.11	ENST00000221566.7:ENST00000678109.1:ENST00000676984.1:ENST00000677513.1:ENST00000676943.1:ENST00000677731.1:ENST00000679138.1:ENST00000677562.1:ENST00000678595.1:ENST00000677754.1:ENST00000677149.1:ENST00000678577.1:ENST00000589251.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	27	2	2.79889	3.8444350000000003	4.88998	0.0110274	4.016e-4	0.0927187	0.0185763
chr5	179719781	179719869	2560913	0	+	0.329545	(0.32,0.35]	chr5	244934	1	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	CANX	ENSG00000127022.16	ENST00000681674.1:ENST00000681712.1:ENST00000681903.1:ENST00000680406.1:ENST00000502296.6:ENST00000504734.5:ENST00000452673.6:ENST00000679719.1:ENST00000679523.1:ENST00000679395.1:ENST00000681504.1:ENST00000679642.1:ENST00000681894.1:ENST00000680504.1:ENST00000681265.1:ENST00000680894.1:ENST00000680812.1:ENST00000680614.1:ENST00000680985.1:ENST00000680837.1:ENST00000680827.1:ENST00000681576.1:ENST00000680984.1:ENST00000680042.1:ENST00000681762.1:ENST00000681476.1:ENST00000681072.1:ENST00000247461.9:ENST00000513246.6:ENST00000680618.1:ENST00000502673.6:ENST00000680092.1:ENST00000506654.6:ENST00000514032.5:ENST00000681733.1:ENST00000679471.1:ENST00000679527.1:ENST00000680006.1:ENST00000681398.1:ENST00000681431.1:ENST00000680013.1:ENST00000681076.1:ENST00000681168.1:ENST00000509563.2:ENST00000681342.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	47	2	2.51061	3.8444149999999997	5.17822	0.0364463	0.00115625	0.138959	0.0313436
chr1	230942424	230942522	654840	0	-	0.285714	(0.28,0.32]	chr1	77676	15	INTRON	INTRON	TTC13	ENSG00000143643.13	ENST00000366661.9:ENST00000366662.8:ENST00000481976.6:ENST00000522821.5:ENST00000522399.1:ENST00000466507.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	46	2	2.53522	3.8444	5.15358	0.0310424	0.0052282	0.143457	0.0633615
chr2	65341815	65341914	1143282	0	-	0.30303	(0.28,0.32]	chr2	122222	67	INTRON	INTRON	SPRED2	ENSG00000198369.10	ENST00000356388.9:ENST00000443619.6:ENST00000452315.5:ENST00000474228.1:ENST00000426832.1:ENST00000440972.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	46	2	2.53522	3.8444	5.15358	0.0310424	0.0052282	0.143457	0.0633615
chr5	69170869	69170969	2380016	0	+	0.36	(0.35,0.378]	chr5	229158	2	SS3_PROX	SS3_PROX:INTRON	CCNB1	ENSG00000134057.15	ENST00000506572.5:ENST00000256442.10:ENST00000508407.5:ENST00000505500.5:ENST00000503507.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	45	2	2.53856	3.84436	5.15016	0.0326077	9.78549e-4	0.133687	0.0287765
chr1	27456311	27456411	406426	0	-	0.29	(0.28,0.32]	chr1	48986	270	INTRON	INTRON	WASF2	ENSG00000158195.11	ENST00000618852.5:ENST00000536657.1	protein_coding	protein_coding	protein_coding	protein_coding	4	85	2	1.72287	3.8443449999999997	5.96582	0.0286502	3.08567e-4	0.139456	0.0161584
chr1	37871406	37871499	425402	0	-	0.516129	(0.515,0.57]	chr1	51550	3	INTRON	INTRON	INPP5B	ENSG00000204084.13	ENST00000373023.6:ENST00000373024.8:ENST00000458109.6:ENST00000373027.5:ENST00000373026.5:ENST00000470364.5:ENST00000474758.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	38	2	2.76354	3.844135	4.92473	0.0147344	0.00108255	0.0983813	0.0300133
chr17	77321328	77321424	6679843	0	+	0.552083	(0.515,0.57]	chr17	652488	6	INTRON	INTRON	SEPTIN9	ENSG00000184640.20	ENST00000589070.1:ENST00000591833.5:ENST00000591198.5:ENST00000427177.6:ENST00000590576.5:ENST00000431235.6:ENST00000449803.6:ENST00000587237.1:ENST00000329047.13:ENST00000588575.1:ENST00000590595.1:ENST00000590294.6:ENST00000591934.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	38	2	2.76354	3.844135	4.92473	0.0147344	0.00108255	0.0983813	0.0300133
chr19	21732086	21732185	7158943	0	-	0.545455	(0.515,0.57]	chr19	723706	37	INTRON	INTRON	ZNF100	ENSG00000197020.12	ENST00000358296.11:ENST00000305570.10:ENST00000594401.1	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	2.76354	3.844135	4.92473	0.0147344	0.00108255	0.0983813	0.0300133
chr7	10631046	10631146	3483090	0	-	0.36	(0.35,0.378]	chr7	325772	691	INTRON	INTRON	MGC4859	ENSG00000283117.1	ENST00000634803.1	lncRNA	lncRNA	lncRNA	lncRNA	1	45	2	2.72497	3.844135	4.9633	0.0198266	0.00198929	0.109608	0.0411469
chr10	73047401	73047501	4647344	0	-	0.35	(0.32,0.35]	chr10	427517	3	SS3_PROX	SS3_PROX:INTRON	P4HA1	ENSG00000122884.13	ENST00000394890.7:ENST00000307116.6:ENST00000373008.6:ENST00000440381.5:ENST00000263556.3	protein_coding	protein_coding	protein_coding	protein_coding	3	72	2	2.50411	3.84413	5.18415	0.00333629	0.00267989	0.0512081	0.0478767
chr17	51279504	51279604	6627768	0	+	0.34	(0.32,0.35]	chr17	647373	1	SS3_PROX	SS3_PROX:INTRON	UTP18	ENSG00000011260.14	ENST00000225298.12:ENST00000508506.3:ENST00000583725.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	58	2	2.45306	3.84413	5.2352	0.00916394	0.0028268	0.0855292	0.0472361
chr17	37445268	37445367	6604020	0	+	0.50505	(0.476,0.515]	chr17	642800	1	INTRON	INTRON	TADA2A	ENSG00000276234.5	ENST00000615182.5:ENST00000620628.4:ENST00000614122.4:ENST00000620367.4:ENST00000612272.4:ENST00000615328.4:ENST00000620086.4:ENST00000619777.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	40	2	3.07422	3.84412	4.61402	0.00947755	0.00506023	0.0817766	0.0646039
chr2	96637766	96637848	1181198	0	-	0.512195	(0.476,0.515]	chr2	126535	2	SS5_PROX	SS5_PROX:INTRON	KANSL3	ENSG00000114982.19	ENST00000354204.10:ENST00000431828.6:ENST00000487070.5:ENST00000420155.5:ENST00000670907.1:ENST00000666923.1:ENST00000597150.5:ENST00000444759.5:ENST00000452268.5:ENST00000448075.1:ENST00000416138.1:ENST00000418735.1:ENST00000475820.1:ENST00000478492.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	40	2	3.07422	3.84412	4.61402	0.00947755	0.00506023	0.0817766	0.0646039
chr5	79625186	79625285	2398859	0	+	0.333333	(0.32,0.35]	chr5	231707	13	INTRON	INTRON	TENT2	ENSG00000164329.14	ENST00000423041.6:ENST00000504233.5:ENST00000453514.6:ENST00000428308.6:ENST00000296783.7	protein_coding	protein_coding	protein_coding	protein_coding	2	58	2	2.35591	3.8440450000000004	5.33218	0.0128129	0.00204346	0.0990564	0.04086
chr15	64476918	64477018	6044251	0	+	0.43	(0.408,0.44]	chr15	575688	157	INTRON	INTRON	ZNF609	ENSG00000180357.10	ENST00000326648.5:ENST00000416172.1	protein_coding	protein_coding	protein_coding	protein_coding	2	53	2	2.55103	3.844025	5.13702	0.00587353	0.00202889	0.0690758	0.04086
chr3	179202040	179202133	1566342	0	+	0.430108	(0.408,0.44]	chr3	161921	1	INTRON	INTRON	PIK3CA	ENSG00000121879.6	ENST00000263967.4:ENST00000643187.1:ENST00000675786.1:ENST00000675467.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	53	2	2.55103	3.844025	5.13702	0.00587353	0.00202889	0.0690758	0.04086
chr12	122597242	122597339	5241337	0	+	0.443299	(0.44,0.476]	chr12	497810	1	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	KNTC1	ENSG00000184445.12	ENST00000450485.6:ENST00000333479.12:ENST00000535186.1:ENST00000423927.2:ENST00000545065.1:ENST00000377192.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	119	2	3.56198	3.8438	4.12562	7.05839e-5	3.66727e-5	0.0075214	0.00484751
chr15	38281509	38281609	5998638	0	+	0.35	(0.32,0.35]	chr15	570204	129	INTRON	INTRON	SPRED1	ENSG00000166068.13	ENST00000299084.9:ENST00000561205.1:ENST00000561317.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	45	2	2.40308	3.8437900000000003	5.2845	0.0417732	0.00240071	0.161736	0.0440612
chr16	23559027	23559115	6323064	0	+	0.340909	(0.32,0.35]	chr16	605536	1	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	UBFD1	ENSG00000103353.16	ENST00000567212.5:ENST00000395878.8:ENST00000567264.1:ENST00000571064.5:ENST00000566669.1:ENST00000569919.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	45	2	2.40308	3.8437900000000003	5.2845	0.0417732	0.00240071	0.161736	0.0440612
chr1	109381380	109381480	520854	0	-	0.24	[0,0.28]	chr1	61195	114	INTRON	INTRON	SORT1	ENSG00000134243.12	ENST00000538502.5:ENST00000256637.8:ENST00000493736.5:ENST00000482236.5:ENST00000633956.1:ENST00000471996.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	68	2	2.62985	3.8436649999999997	5.05748	0.0113653	0.00581422	0.0886611	0.068681
chr19	17339599	17339699	7030042	0	+	0.54	(0.515,0.57]	chr19	700026	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	GTPBP3	ENSG00000130299.17	ENST00000361619.9:ENST00000598038.5:ENST00000324894.13:ENST00000600625.5:ENST00000358792.11:ENST00000598493.5:ENST00000594018.5:ENST00000602056.1:ENST00000596125.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	101	2	3.37276	3.84361	4.31446	1.02064e-4	1.36228e-5	0.00853098	0.00292224
chr1	51401645	51401741	453159	0	-	0.416667	(0.408,0.44]	chr1	54335	3	INTRON	INTRON	EPS15	ENSG00000085832.17	ENST00000371733.8:ENST00000371730.6:ENST00000486505.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	40	2	3.08738	3.843585	4.59979	0.0109537	0.00478231	0.0873034	0.0636201
chr17	4883962	4884062	6550024	0	+	0.43	(0.408,0.44]	chr17	635602	2	SS3_PROX	SS3_PROX:INTRON	MINK1	ENSG00000141503.17	ENST00000355280.11:ENST00000572330.5:ENST00000347992.11:ENST00000574453.5:ENST00000453408.7:ENST00000664602.1:ENST00000577021.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	40	2	3.08738	3.843585	4.59979	0.0109537	0.00478231	0.0873034	0.0636201
chr11	65412934	65413032	4805764	0	+	0.418367	(0.408,0.44]	chr11	446553	17	UTR3	UTR3:EXON_MRNA	FRMD8	ENSG00000126391.14	ENST00000317568.10:ENST00000355991.9	protein_coding	protein_coding	protein_coding	protein_coding	3	126	2	3.01942	3.84347	4.66752	7.74413e-4	3.26573e-6	0.0256083	0.00128387
chr1	154218985	154219085	558751	0	-	0.54	(0.515,0.57]	chr1	66342	2	SS3_PROX	SS3_PROX:INTRON	C1orf43	ENSG00000143612.21	ENST00000648267.1:ENST00000470180.2:ENST00000350592.7:ENST00000362076.8:ENST00000368521.10:ENST00000640799.1:ENST00000368519.5:ENST00000368518.5:ENST00000368516.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	58	2	2.41022	3.843365	5.27651	0.00332441	5.11033e-4	0.0528673	0.020816
chr1	19203507	19203607	386775	0	-	0.41	(0.408,0.44]	chr1	46143	13	INTRON	INTRON	UBR4	ENSG00000127481.15	ENST00000375254.8	protein_coding	protein_coding	protein_coding	protein_coding	1	41	2	3.25948	3.843305	4.42713	0.0173083	0.00246454	0.104099	0.0459102
chr14	96324498	96324590	5965960	0	-	0.434783	(0.408,0.44]	chr14	566788	1	INTRON	INTRON	ATG2B	ENSG00000066739.12	ENST00000359933.6	protein_coding	protein_coding	protein_coding	protein_coding	1	41	2	3.25948	3.843305	4.42713	0.0173083	0.00246454	0.104099	0.0459102
chr7	32507872	32507972	3303357	0	+	0.36	(0.35,0.378]	chr7	306758	117	INTRON	INTRON	AVL9	ENSG00000105778.20	ENST00000485228.1:ENST00000318709.9:ENST00000459629.1:ENST00000409301.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	77	2	1.81955	3.8432649999999997	5.86698	0.0194679	1.76496e-4	0.11986	0.01216
chr16	16591784	16591884	6311780	0	+	0.58	(0.57,1]	chr16	604098	918	INTRON	INTRON	ENSG00000260126	ENSG00000260126.2	ENST00000567465.2	lncRNA	lncRNA	lncRNA	lncRNA	2	37	2	2.17026	3.8432399999999998	5.51622	0.0220522	1.33983e-5	0.123836	0.00288846
chr16	31716496	31716595	6341000	0	+	0.525253	(0.515,0.57]	chr16	608488	17	INTRON	INTRON	KRBOX5	ENSG00000197302.11	ENST00000529943.6:ENST00000539915.5:ENST00000316491.14:ENST00000529515.2:ENST00000534277.5:ENST00000531864.6:ENST00000689850.1:ENST00000693662.1:ENST00000398707.7:ENST00000398696.3:ENST00000533488.6:ENST00000534369.1:ENST00000542684.5:ENST00000544044.1:ENST00000692451.1:ENST00000530881.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	39	2	3.09002	3.84316	4.5963	0.00491099	0.00370287	0.0609494	0.0561162
chr5	131468022	131468121	2717474	0	-	0.535354	(0.515,0.57]	chr5	255505	34	INTRON	INTRON	RAPGEF6	ENSG00000158987.22	ENST00000509018.6:ENST00000671916.1:ENST00000507093.5:ENST00000296859.10:ENST00000627212.2:ENST00000512052.5:ENST00000308008.10:ENST00000515170.5:ENST00000510071.5:ENST00000504919.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	39	2	3.09002	3.84316	4.5963	0.00491099	0.00370287	0.0609494	0.0561162
chr4	862621	862721	2093566	0	-	0.44	(0.408,0.44]	chr4	206857	25	INTRON	INTRON	GAK	ENSG00000178950.18	ENST00000314167.9:ENST00000511163.5:ENST00000509566.1:ENST00000515868.5:ENST00000511980.5:ENST00000510799.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	40	2	2.66579	3.8430349999999995	5.02028	0.019342	0.00303216	0.119831	0.0493883
chr1	229496247	229496347	653205	0	-	0.5	(0.476,0.515]	chr1	77378	2	SS3_PROX	SS3_PROX:INTRON	NUP133	ENSG00000069248.12	ENST00000261396.6	protein_coding	protein_coding	protein_coding	protein_coding	1	41	2	2.47949	3.84297	5.20645	0.0326974	0.00136049	0.145164	0.0336321
chr19	1435105	1435202	6995385	0	+	0.28866000000000003	(0.28,0.32]	chr19	693229	3	UTR3	UTR3:EXON_MRNA	DAZAP1	ENSG00000071626.17	ENST00000336761.10:ENST00000233078.9:ENST00000592522.5:ENST00000587079.5:ENST00000589484.5:ENST00000585485.2:ENST00000589874.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	178	2	3.06488	3.842785	4.62069	3.95846e-4	4.0485e-6	0.0185763	0.00133338
chr18	57572469	57572561	6980330	0	-	0.282609	(0.28,0.32]	chr18	690621	5	INTRON	INTRON	FECH	ENSG00000066926.13	ENST00000262093.11:ENST00000652755.1:ENST00000651787.1:ENST00000382873.8:ENST00000585494.5:ENST00000682485.1:ENST00000592699.6:ENST00000585699.1:ENST00000585747.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	61	2	2.38391	3.84272	5.30153	0.0122525	0.00332518	0.0969406	0.0512081
chr19	47169217	47169317	7084266	0	+	0.43	(0.408,0.44]	chr19	708792	117	INTRON	INTRON	SAE1	ENSG00000142230.13	ENST00000594144.5:ENST00000413379.7:ENST00000600706.5:ENST00000270225.12:ENST00000598840.5:ENST00000414294.6:ENST00000660039.1:ENST00000664120.1:ENST00000596995.1:ENST00000392776.3:ENST00000659110.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	64	2	2.38928	3.8427	5.29612	0.0039105	0.00113523	0.0569957	0.0307488
chr5	34941483	34941583	2337483	0	+	0.32	(0.28,0.32]	chr5	225762	3	SS5_PROX	SS5_PROX:INTRON	DNAJC21	ENSG00000168724.17	ENST00000648817.1:ENST00000382021.2:ENST00000642851.1:ENST00000642675.1:ENST00000644357.1:ENST00000642285.1:ENST00000646714.1:ENST00000514237.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	61	2	2.33771	3.8426799999999997	5.34765	0.0142701	0.00287138	0.103838	0.0474836
chr17	47175762	47175862	6789258	0	-	0.39	(0.378,0.408]	chr17	669633	33	INTRON	INTRON	CDC27	ENSG00000004897.12	ENST00000066544.8:ENST00000531206.5:ENST00000533415.5:ENST00000527547.5:ENST00000526866.5:ENST00000525495.6:ENST00000573550.5:ENST00000575483.5:ENST00000532893.5:ENST00000528748.5:ENST00000532575.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	92	2	3.72397	3.8426549999999997	3.96134	3.23378e-4	1.71065e-4	0.0159645	0.0119955
chr10	31898887	31898987	4590021	0	-	0.33	(0.32,0.35]	chr10	423163	369	INTRON	INTRON	ARHGAP12	ENSG00000165322.18	ENST00000344936.7:ENST00000375245.8:ENST00000396144.8:ENST00000375250.9:ENST00000311380.8	protein_coding	protein_coding	protein_coding	protein_coding	4	172	2	3.82884	3.842645	3.85645	4.19685e-4	1.39196e-6	0.018968	6.99627e-4
chr10	42804615	42804715	4428253	0	+	0.34	(0.32,0.35]	chr10	408133	20	INTRON	INTRON	BMS1	ENSG00000165733.8	ENST00000374518.6	protein_coding	protein_coding	protein_coding	protein_coding	2	64	2	1.99307	3.8425700000000003	5.69207	0.04271	1.29349e-4	0.148082	0.00979769
chr19	8484009	8484108	7011170	0	+	0.494949	(0.476,0.515]	chr19	696206	4	INTRON	INTRON	HNRNPM	ENSG00000099783.12	ENST00000348943.7:ENST00000600092.5:ENST00000325495.9:ENST00000600806.5:ENST00000620401.4:ENST00000594907.5:ENST00000597270.1:ENST00000597081.1:ENST00000598603.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	64	2	2.37448	3.84253	5.31058	0.00419067	9.15544e-4	0.0591344	0.0278396
chr15	78472661	78472741	6067841	0	+	0.4375	(0.408,0.44]	chr15	577958	4	INTRON	INTRON	IREB2	ENSG00000136381.13	ENST00000258886.13:ENST00000560440.5:ENST00000558570.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	60	2	2.68622	3.842295	4.99837	0.00418848	0.00131369	0.0572071	0.0333932
chr10	125128935	125129034	4714023	0	-	0.363636	(0.35,0.378]	chr10	434919	57	INTRON	INTRON	CTBP2	ENSG00000175029.17	ENST00000337195.9:ENST00000411419.6:ENST00000494626.6:ENST00000531469.5:ENST00000460976.5:ENST00000476817.1:ENST00000530884.1:ENST00000530930.1:ENST00000467395.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	85	2	1.85092	3.84227	5.83362	0.0114682	2.04087e-4	0.0956037	0.0129859
chr2	175154053	175154153	1272200	0	-	0.54	(0.515,0.57]	chr2	134482	25	INTRON	INTRON	ATF2	ENSG00000115966.18	ENST00000345739.9:ENST00000426833.7:ENST00000264110.7:ENST00000409635.5:ENST00000428760.5:ENST00000392544.5:ENST00000417080.5:ENST00000456655.5:ENST00000421438.5:ENST00000429579.5:ENST00000415955.5:ENST00000409499.5:ENST00000435231.6:ENST00000437522.5:ENST00000409833.5:ENST00000413123.5:ENST00000445349.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	38	2	3.37125	3.8422549999999998	4.31326	0.0141817	0.00136343	0.0959618	0.0339121
chr3	5189583	5189681	1354199	0	+	0.510204	(0.476,0.515]	chr3	142413	1	INTRON	INTRON	EDEM1	ENSG00000134109.11	ENST00000434243.5:ENST00000256497.9:ENST00000465369.5:ENST00000465187.1:ENST00000445686.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	88	2	3.70553	3.84219	3.97885	3.44823e-4	1.30749e-4	0.0165103	0.0103941
chr1	36263076	36263176	73319	0	+	0.53	(0.515,0.57]	chr1	9377	32	INTRON	INTRON	THRAP3	ENSG00000054118.15	ENST00000469141.6:ENST00000648638.1:ENST00000354618.10	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	2.83501	3.8421849999999997	4.84936	0.0117686	0.00146032	0.0894475	0.0349875
chr1	246906256	246906355	681701	0	-	0.525253	(0.515,0.57]	chr1	80017	2	INTRON	INTRON	AHCTF1	ENSG00000153207.16	ENST00000648844.2:ENST00000326225.3:ENST00000366508.5	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	2.83501	3.8421849999999997	4.84936	0.0117686	0.00146032	0.0894475	0.0349875
chr19	8308984	8309084	7130896	0	-	0.57	(0.515,0.57]	chr19	718432	1	SS3_PROX	SS3_PROX:INTRON	ENSG00000167774:NDUFA7	ENSG00000167774.2:ENSG00000267855.6	ENST00000598884.1:ENST00000593729.5:ENST00000601101.5:ENST00000595856.5	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	1	38	2	2.83501	3.8421849999999997	4.84936	0.0117686	0.00146032	0.0894475	0.0349875
chr5	149548643	149548740	2751055	0	-	0.536082	(0.515,0.57]	chr5	259084	30	INTRON	INTRON	CSNK1A1	ENSG00000113712.19	ENST00000261798.10:ENST00000377843.8:ENST00000657001.1:ENST00000515768.6:ENST00000606719.6:ENST00000657462.1:ENST00000661952.1:ENST00000504676.5:ENST00000515435.5:ENST00000662268.1:ENST00000657706.1:ENST00000670598.1:ENST00000523203.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	38	2	2.83501	3.8421849999999997	4.84936	0.0117686	0.00146032	0.0894475	0.0349875
chr7	77024468	77024565	3341813	0	+	0.515464	(0.515,0.57]	chr7	311278	10	EXON_LNCRNA	EXON_LNCRNA:INTRON	DTX2P1-UPK3BP1-PMS2P11	ENSG00000265479.7	ENST00000636308.1:ENST00000579700.1	lncRNA	lncRNA	lncRNA	lncRNA	1	38	2	2.83501	3.8421849999999997	4.84936	0.0117686	0.00146032	0.0894475	0.0349875
chr7	155651205	155651305	3451960	0	+	0.32	(0.28,0.32]	chr7	322642	59	INTRON	INTRON	RBM33	ENSG00000184863.11	ENST00000287912.7:ENST00000401878.8:ENST00000392759.7	protein_coding	protein_coding	protein_coding	protein_coding	1	47	2	3.17453	3.84217	4.50981	0.0275554	0.00429297	0.123904	0.0599065
chr8	125953361	125953458	3859399	0	+	0.247423	[0,0.28]	chr8	355338	4	EXON_LNCRNA	EXON_LNCRNA:INTRON	ENSG00000286122	ENSG00000286122.1	ENST00000651999.1:ENST00000652177.1	lncRNA	lncRNA	lncRNA	lncRNA	3	166	2	3.66724	3.8418200000000002	4.0164	3.46128e-4	5.85408e-5	0.0173358	0.00627666
chr6	147334919	147335018	2990032	0	+	0.323232	(0.32,0.35]	chr6	280108	3	INTRON	INTRON	STXBP5	ENSG00000164506.15	ENST00000321680.11:ENST00000367481.7:ENST00000367480.7:ENST00000367475.6:ENST00000392291.2	protein_coding	protein_coding	protein_coding	protein_coding	2	58	2	2.49929	3.8417199999999996	5.18415	0.00776612	0.00333629	0.0787356	0.0512081
chr7	152329401	152329501	3680223	0	-	0.51	(0.476,0.515]	chr7	341641	137	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000684262.1:ENST00000682301.1:ENST00000452749.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	116	2	3.7321	3.841665	3.95123	1.50038e-4	1.52889e-5	0.011202	0.00293847
chr14	21387767	21387866	5835565	0	-	0.343434	(0.32,0.35]	chr14	554613	12	INTRON	INTRON	CHD8	ENSG00000100888.15	ENST00000430710.8:ENST00000646647.2:ENST00000645929.1:ENST00000645206.1:ENST00000557364.6:ENST00000643469.1:ENST00000553870.2:ENST00000555935.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	58	2	2.30476	3.841545	5.37833	0.0151817	0.00174321	0.108535	0.0375363
chr2	32025741	32025840	1091276	0	-	0.474747	(0.44,0.476]	chr2	116943	11	INTRON	INTRON	DPY30	ENSG00000162961.14	ENST00000452582.5:ENST00000414013.5:ENST00000430665.5:ENST00000422413.1:ENST00000342166.10:ENST00000295066.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	57	2	2.13779	3.841425	5.54506	0.0264596	1.21665e-4	0.122506	0.00942499
chr11	119098402	119098487	5046753	0	-	0.423529	(0.408,0.44]	chr11	476003	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	DPAGT1	ENSG00000172269.20	ENST00000682232.1:ENST00000409993.6:ENST00000392834.7:ENST00000354202.9:ENST00000481084.5:ENST00000461999.1:ENST00000530052.2:ENST00000682652.1:ENST00000683955.1:ENST00000684345.1:ENST00000683373.1:ENST00000682192.1:ENST00000683143.1:ENST00000682791.1:ENST00000682946.1:ENST00000682811.1:ENST00000683567.1:ENST00000524658.2:ENST00000683558.1:ENST00000682517.1:ENST00000684315.1:ENST00000684682.1:ENST00000682326.1:ENST00000684499.1:ENST00000684252.1:ENST00000682691.1:ENST00000684142.1:ENST00000684255.1:ENST00000445653.6:ENST00000682191.1:ENST00000414373.5:ENST00000682665.1:ENST00000639704.1:ENST00000636404.1:ENST00000638850.1:ENST00000640747.1:ENST00000682883.1:ENST00000682404.1:ENST00000442480.1:ENST00000640102.1:ENST00000525456.5:ENST00000533687.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	43	2	2.43988	3.8412750000000004	5.24267	0.0398236	4.83767e-4	0.143072	0.0199261
chr5	60971226	60971326	2359480	0	+	0.31	(0.28,0.32]	chr5	227644	254	INTRON	INTRON	NDUFAF2	ENSG00000164182.12	ENST00000678452.1:ENST00000677756.1:ENST00000296597.10:ENST00000511107.1:ENST00000677932.1:ENST00000502658.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	47	2	2.38101	3.8412699999999997	5.30153	0.0456017	0.00332518	0.164236	0.0512081
chr13	91349437	91349517	5516802	0	+	0.2625	[0,0.28]	chr13	527577	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MIR17HG	ENSG00000215417.13	ENST00000400282.6:ENST00000582141.5:ENST00000581816.1:ENST00000659898.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	4	218	2	2.71942	3.8411850000000003	4.96295	0.00139528	4.45568e-6	0.0341592	0.00155244
chr21	38103132	38103232	7463917	0	-	0.49	(0.476,0.515]	chr21	760303	34	INTRON	INTRON	DSCR4	ENSG00000184029.9	ENST00000398948.5:ENST00000328264.7:ENST00000482032.1	lncRNA	lncRNA	lncRNA	lncRNA	2	58	2	1.92984	3.840935	5.75203	0.0466474	4.51048e-5	0.151522	0.0054649
chr7	92112813	92112908	3568789	0	-	0.378947	(0.378,0.408]	chr7	332436	8	UTR3	UTR3:EXON_MRNA:INTRON	CYP51A1:ENSG00000289027	ENSG00000001630.18:ENSG00000289027.1	ENST00000691309.1:ENST00000003100.13:ENST00000692281.1:ENST00000693096.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	194	2	3.35551	3.8408300000000004	4.32615	5.02183e-5	2.86878e-7	0.00612951	2.66808e-4
chr10	35358173	35358273	4424719	0	+	0.28	[0,0.28]	chr10	407899	206	INTRON	INTRON	CCNY	ENSG00000108100.18	ENST00000374706.5:ENST00000490012.6:ENST00000493157.6:ENST00000374704.8:ENST00000265375.13:ENST00000339497.7:ENST00000492478.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	123	2	3.64765	3.84077	4.03389	0.00144832	1.46948e-4	0.034341000000000003	0.0105341
chr12	881284	881377	5057483	0	+	0.419355	(0.408,0.44]	chr12	477505	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	WNK1	ENSG00000060237.19	ENST00000315939.11:ENST00000340908.9:ENST00000535572.5:ENST00000537687.5:ENST00000530271.6:ENST00000675631.1:ENST00000676347.1:ENST00000674810.1:ENST00000675236.1:ENST00000542543.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	43	2	2.89795	3.840715	4.78348	0.0110735	0.00290352	0.0873897	0.0494641
chr17	30132828	30132928	6587550	0	+	0.41	(0.408,0.44]	chr17	640563	47	INTRON	INTRON	NSRP1	ENSG00000126653.18	ENST00000540900.7:ENST00000612959.4:ENST00000247026.10:ENST00000577289.6:ENST00000584154.5:ENST00000394826.8:ENST00000475652.5:ENST00000584317.5:ENST00000583301.5:ENST00000585881.5:ENST00000467446.6:ENST00000580103.6:ENST00000581048.5:ENST00000588614.1:ENST00000589608.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	43	2	2.89795	3.840715	4.78348	0.0110735	0.00290352	0.0873897	0.0494641
chr1	100146214	100146312	172214	0	+	0.265306	[0,0.28]	chr1	18699	17	INTRON	INTRON	TRMT13	ENSG00000122435.11	ENST00000370141.8	protein_coding	protein_coding	protein_coding	protein_coding	1	56	2	2.89982	3.84062	4.78142	0.0158893	0.00943974	0.101453	0.0861183
chr2	208753164	208753264	996929	0	+	0.21	[0,0.28]	chr2	106920	958	INTRON	INTRON	PTH2R	ENSG00000144407.10	ENST00000419079.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	1	49	2	2.8569	3.8406149999999997	4.82433	0.0200334	0.013822	0.109608	0.10247
chr21	15741222	15741322	7370207	0	+	0.24	[0,0.28]	chr21	752186	104	INTRON	INTRON	USP25	ENSG00000155313.16	ENST00000400183.7:ENST00000285681.6:ENST00000285679.10:ENST00000351097.9	protein_coding	protein_coding	protein_coding	protein_coding	1	49	2	2.8569	3.8406149999999997	4.82433	0.0200334	0.013822	0.109608	0.10247
chr7	75476281	75476380	3558832	0	-	0.434343	(0.408,0.44]	chr7	331555	7	INTRON	INTRON	POM121C:ENSG00000242073	ENSG00000272391.6:ENSG00000242073.2	ENST00000615331.5:ENST00000398379.2:ENST00000415277.2	protein_coding	protein_coding	protein_coding:transcribed_unprocessed_pseudogene	protein_coding:transcribed_unprocessed_pseudogene	4	141	2	3.5443	3.840585	4.13687	6.40544e-5	6.97353e-6	0.00711194	0.00187943
chr16	107448	107547	6425446	0	-	0.494949	(0.476,0.515]	chr16	617341	66	INTRON	INTRON	NPRL3	ENSG00000103148.17	ENST00000611875.5:ENST00000622194.4:ENST00000621703.4:ENST00000399953.7:ENST00000473674.5:ENST00000457916.5:ENST00000483663.5:ENST00000422814.5:ENST00000468260.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	42	2	2.56033	3.8405250000000004	5.12072	0.0287634	8.42139e-4	0.127066	0.0263691
chr7	67259150	67259250	3541424	0	-	0.49	(0.476,0.515]	chr7	330356	35	INTRON	INTRON	PMS2P4	ENSG00000067601.9	ENST00000685171.1:ENST00000688358.1:ENST00000692496.1:ENST00000685583.1:ENST00000688710.1:ENST00000684859.1:ENST00000685318.1:ENST00000691713.1:ENST00000686389.1:ENST00000690253.1:ENST00000688815.1:ENST00000692171.1:ENST00000692360.1:ENST00000689281.1:ENST00000690241.1:ENST00000689629.1:ENST00000689043.1:ENST00000688809.1:ENST00000687432.1:ENST00000687680.1:ENST00000686900.1:ENST00000691782.1:ENST00000693356.1:ENST00000691384.1:ENST00000690440.1:ENST00000686719.1:ENST00000686561.1:ENST00000688238.1:ENST00000687826.1:ENST00000689908.1:ENST00000689385.1:ENST00000689855.1:ENST00000691806.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	1	42	2	2.56033	3.8405250000000004	5.12072	0.0287634	8.42139e-4	0.127066	0.0263691
chr7	75929227	75929326	3339036	0	+	0.50505	(0.476,0.515]	chr7	310884	76	INTRON	INTRON	POR	ENSG00000127948.16	ENST00000453773.5:ENST00000439963.5:ENST00000448410.5:ENST00000461988.6:ENST00000471238.5:ENST00000421059.1:ENST00000394893.5:ENST00000412521.5:ENST00000414186.5:ENST00000432753.5:ENST00000449920.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	42	2	2.56033	3.8405250000000004	5.12072	0.0287634	8.42139e-4	0.127066	0.0263691
chr12	56643302	56643402	5335786	0	-	0.34	(0.32,0.35]	chr12	510130	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ATP5F1B	ENSG00000110955.9	ENST00000262030.8:ENST00000548474.2:ENST00000547808.5:ENST00000547250.5:ENST00000551020.5:ENST00000552959.5:ENST00000551570.5:ENST00000553007.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	246	2	3.06785	3.84051	4.61317	8.93896e-6	7.18648e-6	0.00230101	0.0019014
chr7	155655495	155655595	3452003	0	+	0.28	[0,0.28]	chr7	322642	102	INTRON	INTRON	RBM33	ENSG00000184863.11	ENST00000287912.7:ENST00000401878.8:ENST00000392759.7	protein_coding	protein_coding	protein_coding	protein_coding	2	123	2	3.62411	3.840405	4.0567	0.00157815	1.31789e-4	0.0362091	0.00990153
chr10	87086766	87086866	4659758	0	-	0.42	(0.408,0.44]	chr10	429378	70	INTRON	INTRON	GLUD1	ENSG00000148672.10	ENST00000277865.5:ENST00000684699.1:ENST00000682396.1:ENST00000683022.1:ENST00000683269.1:ENST00000683256.1:ENST00000681987.1:ENST00000684032.1:ENST00000684338.1:ENST00000684201.1:ENST00000682507.1:ENST00000683783.1:ENST00000681988.1:ENST00000682622.1:ENST00000684546.1:ENST00000684372.1:ENST00000682833.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	88	2	3.83217	3.84038	3.84859	2.66911e-4	1.79883e-4	0.0149989	0.0116696
chr7	128590353	128590452	3407952	0	+	0.222222	[0,0.28]	chr7	318358	99	INTRON	INTRON	ENSG00000280828:ENSG00000242588	ENSG00000280828.1:ENSG00000242588.6	ENST00000479267.2:ENST00000605862.5	lncRNA	lncRNA	lncRNA:unprocessed_pseudogene	lncRNA:unprocessed_pseudogene	1	49	2	2.57033	3.84033	5.11033	0.0305273	0.00991388	0.143385	0.0838372
chr10	12023657	12023757	4557589	0	-	0.51	(0.476,0.515]	chr10	420618	91	INTRON	INTRON	UPF2	ENSG00000151461.20	ENST00000357604.10:ENST00000356352.6:ENST00000397053.6	protein_coding	protein_coding	protein_coding	protein_coding	2	53	2	2.58615	3.8401899999999998	5.09423	0.00515536	0.00204588	0.0650394	0.04086
chr8	31044972	31045072	3728043	0	+	0.32	(0.28,0.32]	chr8	346522	106	INTRON	INTRON	WRN	ENSG00000165392.11	ENST00000650667.1:ENST00000298139.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	51	2	2.18975	3.840175	5.4906	0.0776042	4.89126e-4	0.196285	0.0199693
chr5	74733291	74733388	2641992	0	-	0.381443	(0.378,0.408]	chr5	251123	3	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	GFM2	ENSG00000164347.18	ENST00000345239.6:ENST00000296805.8:ENST00000509430.5:ENST00000515125.5:ENST00000514734.5:ENST00000506263.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	91	2	3.79857	3.8400499999999997	3.88153	2.49905e-4	2.23525e-4	0.0146029	0.0131533
chr12	32682081	32682180	5109772	0	+	0.383838	(0.378,0.408]	chr12	482431	17	INTRON	INTRON	DNM1L	ENSG00000087470.19	ENST00000414834.6:ENST00000452533.6:ENST00000358214.9:ENST00000553257.6:ENST00000549701.6:ENST00000548671.5:ENST00000266481.10:ENST00000551076.5:ENST00000550011.5:ENST00000546649.5:ENST00000547312.5:ENST00000413295.6:ENST00000434676.6:ENST00000547932.5:ENST00000550154.5:ENST00000551476.5:ENST00000551643.5:ENST00000381000.8:ENST00000548750.5:ENST00000549926.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	58	2	1.89621	3.83997	5.78373	0.0488044	1.89312e-4	0.173377	0.012565
chr7	76349724	76349824	3562449	0	-	0.48	(0.476,0.515]	chr7	331942	191	INTRON	INTRON	YWHAG	ENSG00000170027.7	ENST00000307630.5	protein_coding	protein_coding	protein_coding	protein_coding	2	57	2	2.49941	3.8399	5.18039	0.00811651	6.58744e-4	0.0766625	0.0232396
chr21	29026661	29026761	7389981	0	+	0.44	(0.408,0.44]	chr21	752956	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	USP16	ENSG00000156256.15	ENST00000399975.7:ENST00000334352.8:ENST00000474835.5:ENST00000399973.1:ENST00000399976.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	53	2	2.33431	3.8398950000000003	5.34548	0.0129219	9.40657e-4	0.0990564	0.0280776
chr1	193026886	193026983	612538	0	-	0.28866000000000003	(0.28,0.32]	chr1	72454	26	INTRON	INTRON	UCHL5	ENSG00000116750.14	ENST00000367455.8:ENST00000367454.6:ENST00000420791.5:ENST00000367450.7:ENST00000367451.8:ENST00000367449.5:ENST00000367448.5:ENST00000443327.5:ENST00000421683.1	protein_coding	protein_coding	protein_coding	protein_coding	4	85	2	2.12129	3.83987	5.55845	0.00696605	0.00141854	0.0754576	0.0340865
chr16	30557054	30557143	6473747	0	-	0.617977	(0.57,1]	chr16	625818	6	INTRON	INTRON	ZNF764	ENSG00000169951.10	ENST00000395091.3:ENST00000252797.6:ENST00000568333.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	36	2	2.28103	3.8398449999999995	5.39866	0.0151554	2.7267e-5	0.108535	0.00430583
chr3	138296290	138296390	1515068	0	+	0.31	(0.28,0.32]	chr3	158417	5	UTR3	UTR3:EXON_MRNA	ARMC8	ENSG00000114098.18	ENST00000538260.5:ENST00000481646.5:ENST00000469044.6:ENST00000491704.5:ENST00000460495.5:ENST00000466762.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	50	2	2.78004	3.83983	4.89962	0.0193244	0.00425206	0.108861	0.0595557
chr2	55034518	55034618	1121250	0	-	0.28	[0,0.28]	chr2	120163	59	INTRON	INTRON	RTN4	ENSG00000115310.19	ENST00000404909.5:ENST00000394611.6:ENST00000317610.11:ENST00000357732.8:ENST00000337526.11:ENST00000357376.7:ENST00000405240.5:ENST00000438462.1:ENST00000427710.5	protein_coding	protein_coding	protein_coding	protein_coding	4	96	2	2.28734	3.83978	5.39222	0.00453865	0.00414216	0.0595107	0.0589205
chr1	90972743	90972837	502033	0	-	0.329787	(0.32,0.35]	chr1	59494	1	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	ZNF644	ENSG00000122482.22	ENST00000370440.5:ENST00000337393.10:ENST00000347275.9:ENST00000361321.5:ENST00000467231.5:ENST00000498303.5:ENST00000474405.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	47	2	2.4458	3.839535	5.23327	0.0425977	9.33826e-4	0.148082	0.0278746
chr1	151678653	151678753	226403	0	+	0.33	(0.32,0.35]	chr1	25908	29	EXON_LNCRNA	EXON_LNCRNA:INTRON	SNX27	ENSG00000143376.14	ENST00000642376.1:ENST00000368843.8:ENST00000458013.7:ENST00000368841.7:ENST00000642479.1:ENST00000642349.1:ENST00000643179.1:ENST00000644970.1:ENST00000647328.1:ENST00000644113.1:ENST00000368838.2:ENST00000643937.1:ENST00000647551.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	47	2	2.4458	3.839535	5.23327	0.0425977	9.33826e-4	0.148082	0.0278746
chr20	37296597	37296696	7266847	0	+	0.333333	(0.32,0.35]	chr20	738497	66	INTRON	INTRON	MANBAL	ENSG00000101363.13	ENST00000397150.5:ENST00000373606.8:ENST00000397152.7	protein_coding	protein_coding	protein_coding	protein_coding	1	47	2	2.4458	3.839535	5.23327	0.0425977	9.33826e-4	0.148082	0.0278746
chr10	43389334	43389434	4605306	0	-	0.32	(0.28,0.32]	chr10	424249	10	INTRON	INTRON	HNRNPF	ENSG00000169813.17	ENST00000356053.7:ENST00000357065.8:ENST00000544000.5:ENST00000443950.6:ENST00000682386.1:ENST00000337970.7:ENST00000477108.5:ENST00000498176.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	74	2	1.90249	3.839475	5.77646	0.0261803	6.44045e-4	0.133676	0.0231685
chr2	39324363	39324457	1103155	0	-	0.319149	(0.28,0.32]	chr2	118447	7	INTRON	INTRON	MAP4K3	ENSG00000011566.15	ENST00000263881.8:ENST00000437545.5:ENST00000341681.9:ENST00000414968.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	62	2	2.08149	3.83932	5.59715	0.031124	0.00123856	0.143644	0.0322669
chr6	89805050	89805150	3161892	0	-	0.35	(0.32,0.35]	chr6	294886	11	INTRON	INTRON	MDN1	ENSG00000112159.12	ENST00000369393.8:ENST00000629399.2:ENST00000439638.1	protein_coding	protein_coding	protein_coding	protein_coding	1	43	2	2.78073	3.839205	4.89768	0.01481	0.00793135	0.106702	0.076155
chr16	70244478	70244568	6510007	0	-	0.344444	(0.32,0.35]	chr16	630485	3	INTRON	INTRON	SMG1P7	ENSG00000261556.10	ENST00000565246.7:ENST00000568855.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	1	47	2	2.74415	3.8392	4.93425	0.0198267	0.00281048	0.109608	0.0488779
chr7	10531307	10531407	3482092	0	-	0.42	(0.408,0.44]	chr7	325766	782	INTRON	INTRON	MGC4859	ENSG00000283117.1	ENST00000634803.1	lncRNA	lncRNA	lncRNA	lncRNA	4	73	2	2.19398	3.83907	5.48416	0.0043348	5.43528e-4	0.0600652	0.0215026
chr6	122512472	122512572	2948076	0	+	0.36	(0.35,0.378]	chr6	277524	191	INTRON	INTRON	PKIB	ENSG00000135549.16	ENST00000615438.4:ENST00000392491.6:ENST00000608895.5:ENST00000618977.4:ENST00000583007.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	45	2	2.47065	3.83904	5.20743	0.0386172	7.78116e-4	0.142656	0.0256531
chr3	43726110	43726209	1410539	0	+	0.464646	(0.44,0.476]	chr3	147966	35	INTRON	INTRON	ABHD5	ENSG00000011198.10	ENST00000649763.1:ENST00000454293.2:ENST00000463153.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	43	2	2.97451	3.83903	4.70355	0.00853825	0.00383786	0.0780043	0.0562562
chr18	726611	726710	6939834	0	-	0.484848	(0.476,0.515]	chr18	686455	16	INTRON	INTRON	YES1	ENSG00000176105.14	ENST00000584307.5:ENST00000314574.5:ENST00000577961.5	protein_coding	protein_coding	protein_coding	protein_coding	1	44	2	3.15202	3.83901	4.526	0.00699701	0.00455841	0.0754576	0.0595107
chr8	103399719	103399818	4013552	0	-	0.484848	(0.476,0.515]	chr8	367364	12	UTR3	UTR3:EXON_MRNA	SLC25A32	ENSG00000164933.12	ENST00000521645.5:ENST00000523256.6:ENST00000297578.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	44	2	3.15202	3.83901	4.526	0.00699701	0.00455841	0.0754576	0.0595107
chr17	22168747	22168847	6579351	0	+	0.36	(0.35,0.378]	chr17	639556	775	INTRON	INTRON	UBBP4	ENSG00000263563.7	ENST00000648259.1:ENST00000688301.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	4	77	2	2.18494	3.83876	5.49258	0.0047516	8.19894e-4	0.0635784	0.0264086
chr20	21241661	21241760	7248085	0	+	0.525253	(0.515,0.57]	chr20	735874	85	INTRON	INTRON	KIZ	ENSG00000088970.16	ENST00000619574.4:ENST00000620891.4:ENST00000611685.4:ENST00000616848.4:ENST00000619189.5:ENST00000616679.4:ENST00000619179.4:ENST00000621366.1:ENST00000451772.5:ENST00000419359.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	48	2	2.57298	3.83873	5.10448	0.00506495	0.0010345	0.0646039	0.029231300000000002
chr7	73445017	73445114	3554308	0	-	0.43299	(0.408,0.44]	chr7	330723	5	INTRON	INTRON	BAZ1B	ENSG00000009954.11	ENST00000339594.9:ENST00000404251.1	protein_coding	protein_coding	protein_coding	protein_coding	1	44	2	3.05705	3.83857	4.62009	0.00658331	0.00504155	0.0701901	0.0646039
chr1	70217129	70217229	142544	0	+	0.39	(0.378,0.408]	chr1	15965	110	INTRON	INTRON	SRSF11	ENSG00000116754.14	ENST00000370951.5:ENST00000463877.1:ENST00000687381.1:ENST00000370950.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	84	2	2.1653	3.83852	5.51174	0.00289537	5.93655e-4	0.0494641	0.0225024
chr19	14405080	14405180	7024322	0	+	0.55	(0.515,0.57]	chr19	698806	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ADGRE5	ENSG00000123146.20	ENST00000358600.7:ENST00000357355.7:ENST00000242786.6:ENST00000591565.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	61	2	2.15866	3.8384849999999995	5.51831	0.0100547	6.99834e-5	0.0848452	0.00692586
chr19	11107239	11107291	7017000	0	+	0.480769	(0.476,0.515]	chr19	697446	2	SS3_PROX	SS3_PROX:INTRON	LDLR	ENSG00000130164.14	ENST00000557933.5:ENST00000558518.6:ENST00000545707.5:ENST00000535915.5:ENST00000455727.6:ENST00000558013.5:ENST00000252444.9:ENST00000560467.1:ENST00000558528.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	45	2	3.24596	3.838445	4.43093	0.00931369	0.00322919	0.0855292	0.0507087
chr22	40178140	40178240	7518186	0	+	0.32	(0.28,0.32]	chr22	768106	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	TNRC6B	ENSG00000100354.21	ENST00000301923.13:ENST00000402203.5:ENST00000454349.7:ENST00000489500.1:ENST00000335727.13	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	61	2	2.4721	3.83835	5.2046	0.00906617	0.00448664	0.0854289	0.0593175
chr15	92919085	92919185	6103882	0	+	0.53	(0.515,0.57]	chr15	581405	37	INTRON	INTRON	ENSG00000279765:CHD2	ENSG00000279765.3:ENSG00000173575.22	ENST00000629685.2:ENST00000630790.1:ENST00000626874.2:ENST00000394196.9:ENST00000635856.1:ENST00000420239.7:ENST00000628375.2:ENST00000625990.3:ENST00000626782.2:ENST00000629136.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	153	2	2.72593	3.838315	4.9507	1.56527e-4	9.3644e-8	0.0113754	1.32904e-4
chr22	49604355	49604455	7602124	0	-	0.2	[0,0.28]	chr22	778570	87	INTRON	INTRON	MIR3667HG	ENSG00000188511.13	ENST00000414287.5:ENST00000416411.1:ENST00000689875.1	lncRNA	lncRNA	lncRNA	lncRNA	5	102	2	1.53476	3.83788	6.141	0.0398264	3.6661e-4	0.161534	0.0177832
chr7	22987316	22987414	3501767	0	-	0.5	(0.476,0.515]	chr7	326792	12	INTRON	INTRON	FAM126A	ENSG00000122591.13	ENST00000465661.2:ENST00000432176.7:ENST00000440481.6:ENST00000679826.1:ENST00000681402.1:ENST00000681237.1:ENST00000679789.1:ENST00000409923.5:ENST00000681766.1:ENST00000681079.1:ENST00000477349.5:ENST00000409763.1:ENST00000467005.6:ENST00000681468.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	65	2	2.5238	3.8376150000000004	5.15143	0.00218334	0.00166579	0.0435144	0.0369207
chr1	35188668	35188746	420558	0	-	0.538462	(0.515,0.57]	chr1	50671	2	SS5_PROX	SS5_PROX:INTRON	SFPQ	ENSG00000116560.12	ENST00000470472.5:ENST00000696553.1:ENST00000357214.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	108	2	3.8052	3.8373150000000003	3.86943	1.67082e-4	7.03652e-6	0.0111796	0.00198457
chr2	230715057	230715157	1030181	0	+	0.28	[0,0.28]	chr2	110002	6	INTRON	INTRON	CAB39	ENSG00000135932.12	ENST00000258418.10:ENST00000409788.7:ENST00000410084.7	protein_coding	protein_coding	protein_coding	protein_coding	2	123	2	3.55112	3.83708	4.12304	0.00205086	9.55979e-5	0.0409264	0.00822576
chr2	121599874	121599974	1221893	0	-	0.36	(0.35,0.378]	chr2	130051	692	INTRON	INTRON	CLASP1	ENSG00000074054.20	ENST00000263710.8:ENST00000397587.7:ENST00000541377.5:ENST00000409078.8:ENST00000455322.6	protein_coding	protein_coding	protein_coding	protein_coding	1	42	2	3.10863	3.837065	4.5655	0.0155464	0.00470896	0.100909	0.0631419
chr6	28367280	28367380	2840207	0	+	0.37	(0.35,0.378]	chr6	266704	11	UTR3	UTR3:EXON_MRNA	ZKSCAN3	ENSG00000189298.14	ENST00000252211.7:ENST00000377255.3	protein_coding	protein_coding	protein_coding	protein_coding	1	42	2	3.10863	3.837065	4.5655	0.0155464	0.00470896	0.100909	0.0631419
chr7	157364061	157364158	3455574	0	+	0.360825	(0.35,0.378]	chr7	323065	4	INTRON	INTRON	DNAJB6	ENSG00000105993.15	ENST00000441561.5:ENST00000429029.6:ENST00000262177.9:ENST00000486083.6:ENST00000417758.5:ENST00000459889.5:ENST00000443280.5:ENST00000488001.5:ENST00000441291.5:ENST00000437030.5:ENST00000412557.5:ENST00000453383.5:ENST00000634080.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	42	2	3.10863	3.837065	4.5655	0.0155464	0.00470896	0.100909	0.0631419
chrX	151404915	151404958	7735188	0	+	0.534884	(0.515,0.57]	chrX	791461	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	VMA21	ENSG00000160131.14	ENST00000477649.1:ENST00000370361.5:ENST00000330374.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	86	2	1.35483	3.83697	6.31911	0.0486665	5.57818e-7	0.154097	4.00823e-4
chr15	57989916	57990016	6186768	0	-	0.53	(0.515,0.57]	chr15	589736	237	INTRON	INTRON	ALDH1A2	ENSG00000128918.15	ENST00000537372.5:ENST00000249750.9:ENST00000347587.7:ENST00000430119.6:ENST00000558231.5:ENST00000559517.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	36	2	2.9114	3.83692	4.76244	0.00826019	0.00362147	0.0813266	0.0533855
chr3	169789618	169789716	1556472	0	+	0.520408	(0.515,0.57]	chr3	161199	31	UTR3	UTR3:EXON_MRNA	MYNN	ENSG00000085274.16	ENST00000349841.10:ENST00000544106.5	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	2.9114	3.83692	4.76244	0.00826019	0.00362147	0.0813266	0.0533855
chr5	12590309	12590409	2318737	0	+	0.52	(0.515,0.57]	chr5	224776	149	INTRON	INTRON	LINC01194	ENSG00000248131.6	ENST00000513051.6:ENST00000664069.1:ENST00000505196.1:ENST00000505877.5	lncRNA	lncRNA	lncRNA	lncRNA	1	36	2	2.9114	3.83692	4.76244	0.00826019	0.00362147	0.0813266	0.0533855
chr17	59628539	59628639	6641649	0	+	0.46	(0.44,0.476]	chr17	648527	80	INTRON	INTRON	CLTC	ENSG00000141367.12	ENST00000621829.4:ENST00000393043.5:ENST00000269122.8:ENST00000580081.1:ENST00000579456.5:ENST00000584313.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	53	2	2.64669	3.8368599999999997	5.02703	0.0040295	0.00278015	0.0578376	0.0469265
chr1	146941233	146941330	211601	0	+	0.443299	(0.44,0.476]	chr1	23266	19	INTRON	INTRON	NBPF12	ENSG00000268043.8	ENST00000617931.4	protein_coding	protein_coding	protein_coding	protein_coding	1	42	2	2.67572	3.83677	4.99782	0.0212064	0.0013223	0.113017	0.0333932
chr15	42498528	42498628	6009629	0	+	0.47	(0.44,0.476]	chr15	572143	22	INTRON	INTRON	SNAP23	ENSG00000092531.10	ENST00000568745.5:ENST00000561526.5:ENST00000568227.5:ENST00000568451.5:ENST00000563765.5:ENST00000349777.5:ENST00000249647.8:ENST00000564153.5:ENST00000566141.5:ENST00000567094.5:ENST00000566327.5:ENST00000568331.5:ENST00000563451.1:ENST00000626061.2:ENST00000627440.2:ENST00000566035.5:ENST00000568859.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	42	2	2.67572	3.83677	4.99782	0.0212064	0.0013223	0.113017	0.0333932
chr2	206066176	206066275	1317250	0	-	0.474747	(0.44,0.476]	chr2	138079	21	INTRON	INTRON	INO80D	ENSG00000114933.16	ENST00000403263.6:ENST00000414320.1	protein_coding	protein_coding	protein_coding	protein_coding	1	42	2	2.67572	3.83677	4.99782	0.0212064	0.0013223	0.113017	0.0333932
chr11	83159657	83159755	4840819	0	+	0.469388	(0.44,0.476]	chr11	451494	9	INTRON	INTRON	PCF11	ENSG00000165494.12	ENST00000298281.8:ENST00000530660.5:ENST00000690938.1:ENST00000530304.5:ENST00000533018.1	protein_coding	protein_coding	protein_coding	protein_coding	2	53	2	2.27304	3.83652	5.4	0.0158915	7.02611e-4	0.109464	0.024224
chr3	196922615	196922714	1596996	0	+	0.474747	(0.44,0.476]	chr3	165425	82	INTRON	INTRON	SENP5	ENSG00000119231.11	ENST00000445299.6:ENST00000323460.10:ENST00000419026.5	protein_coding	protein_coding	protein_coding	protein_coding	2	53	2	2.27304	3.83652	5.4	0.0158915	7.02611e-4	0.109464	0.024224
chr19	49469362	49469457	7089790	0	+	0.526316	(0.515,0.57]	chr19	709943	5	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	ALDH16A1	ENSG00000161618.10	ENST00000293350.9:ENST00000540132.5:ENST00000599652.5:ENST00000455361.6:ENST00000593417.5:ENST00000594549.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	38	2	2.90311	3.836475	4.76984	0.0094233	0.00198034	0.0817766	0.0411469
chr2	144439297	144439396	1240989	0	-	0.555556	(0.515,0.57]	chr2	131703	84	INTRON	INTRON	ZEB2	ENSG00000169554.23	ENST00000636471.1:ENST00000627532.3:ENST00000638128.1:ENST00000637304.1:ENST00000636179.1:ENST00000636820.1:ENST00000637045.1:ENST00000419938.5:ENST00000409487.7:ENST00000440875.6:ENST00000636732.2:ENST00000636026.2:ENST00000675069.1:ENST00000689298.1:ENST00000539609.7:ENST00000558170.6:ENST00000303660.8:ENST00000427902.5:ENST00000637267.2:ENST00000392861.6:ENST00000431672.4:ENST00000409211.5:ENST00000465308.5:ENST00000434448.5:ENST00000472146.5:ENST00000461784.3:ENST00000476394.5:ENST00000637591.2:ENST00000479735.1:ENST00000453352.5:ENST00000435831.5:ENST00000444559.5:ENST00000630572.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	38	2	2.90311	3.836475	4.76984	0.0094233	0.00198034	0.0817766	0.0411469
chr5	112896901	112897000	2705823	0	-	0.343434	(0.32,0.35]	chr5	254613	37	INTRON	INTRON	REEP5	ENSG00000129625.13	ENST00000379638.9:ENST00000513339.5:ENST00000497856.6:ENST00000511865.6:ENST00000261482.8:ENST00000504247.1:ENST00000474542.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	43	2	2.90786	3.836435	4.76501	0.0114287	0.00993008	0.0886611	0.0877296
chr19	19880246	19880346	7036846	0	+	0.35	(0.32,0.35]	chr19	701599	1	SS5_PROX	SS5_PROX:INTRON	ZNF253	ENSG00000256771.5	ENST00000589717.2:ENST00000592725.1:ENST00000355650.4	protein_coding	protein_coding	protein_coding	protein_coding	1	44	2	3.13277	3.836325	4.53988	0.0202178	0.00458313	0.109913	0.0622676
chr5	141554257	141554357	2739510	0	-	0.34	(0.32,0.35]	chr5	258065	195	INTRON	INTRON	DIAPH1	ENSG00000131504.18	ENST00000647433.1:ENST00000389054.8:ENST00000518047.5:ENST00000491754.5:ENST00000518484.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	43	2	2.71269	3.8362	4.95971	0.0181461	0.00663522	0.114853	0.0703181
chr6	37843503	37843603	2857270	0	+	0.34	(0.32,0.35]	chr6	270225	231	INTRON	INTRON	ZFAND3	ENSG00000156639.12	ENST00000287218.9:ENST00000373391.6:ENST00000474522.5	protein_coding	protein_coding	protein_coding	protein_coding	1	43	2	2.71269	3.8362	4.95971	0.0181461	0.00663522	0.114853	0.0703181
chr7	50307198	50307297	3316724	0	+	0.323232	(0.32,0.35]	chr7	308243	19	INTRON	INTRON	IKZF1	ENSG00000185811.20	ENST00000642219.1:ENST00000645066.1:ENST00000484847.6:ENST00000646110.1:ENST00000331340.8:ENST00000413698.5:ENST00000349824.8:ENST00000343574.9:ENST00000357364.8:ENST00000440768.6:ENST00000346667.8:ENST00000615491.4:ENST00000359197.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	43	2	2.71269	3.8362	4.95971	0.0181461	0.00663522	0.114853	0.0703181
chr7	140379877	140379957	3661095	0	-	0.2375	[0,0.28]	chr7	339854	1	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SLC37A3	ENSG00000157800.18	ENST00000477571.5:ENST00000326232.14:ENST00000447932.6:ENST00000340308.7:ENST00000460560.5:ENST00000490760.5:ENST00000464865.5:ENST00000469193.5:ENST00000461089.5:ENST00000462881.1:ENST00000495257.1:ENST00000467233.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	50	2	3.05114	3.8359900000000002	4.62084	0.0313633	0.0075493	0.13151	0.0773151
chr16	3676516	3676602	6434054	0	-	0.616279	(0.57,1]	chr16	619329	2	EXON_LNCRNA	EXON_LNCRNA:SS3_PROX:INTRON	TRAP1	ENSG00000126602.11	ENST00000246957.10:ENST00000538171.5:ENST00000575671.5:ENST00000573872.5:ENST00000576335.5:ENST00000574175.1:ENST00000575854.5:ENST00000576788.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	27	2	2.89463	3.835965	4.7773	0.00788262	5.07088e-4	0.076155	0.0202328
chr19	23779009	23779105	7042590	0	+	0.583333	(0.57,1]	chr19	702206	8	INTRON	INTRON	RPSAP58	ENSG00000288920.1	ENST00000471224.5:ENST00000692590.1:ENST00000475499.2:ENST00000686829.1:ENST00000689525.1:ENST00000691397.1:ENST00000688405.1:ENST00000692739.1:ENST00000687994.1:ENST00000484897.4:ENST00000685013.1:ENST00000685490.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	27	2	2.89463	3.835965	4.7773	0.00788262	5.07088e-4	0.076155	0.0202328
chr15	55247355	55247455	6180477	0	-	0.32	(0.28,0.32]	chr15	589150	85	INTRON	INTRON	RAB27A	ENSG00000069974.16	ENST00000336787.6:ENST00000396307.6:ENST00000564609.5:ENST00000569493.5:ENST00000566877.5:ENST00000567380.5:ENST00000565972.5:ENST00000563262.5:ENST00000568803.1:ENST00000567639.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	111	2	3.33596	3.83592	4.33588	0.00342993	2.09704e-5	0.0517761	0.00354362
chr16	1374178	1374277	6427562	0	-	0.656566	(0.57,1]	chr16	617816	22	INTRON	INTRON	UNKL	ENSG00000059145.19	ENST00000389221.9:ENST00000248104.11:ENST00000403703.5:ENST00000674376.1:ENST00000397464.5:ENST00000508903.7:ENST00000402641.6:ENST00000513783.1:ENST00000515195.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	27	2	2.99729	3.8358600000000003	4.67443	0.00538023	8.07515e-4	0.0642754	0.0258804
chr19	3386636	3386736	6999827	0	+	0.58	(0.57,1]	chr19	694173	40	INTRON	INTRON	NFIC	ENSG00000141905.19	ENST00000641145.1:ENST00000589123.5:ENST00000395111.7:ENST00000586919.5:ENST00000341919.7:ENST00000443272.3:ENST00000590282.5	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	2.99729	3.8358600000000003	4.67443	0.00538023	8.07515e-4	0.0642754	0.0258804
chrX	3838355	3838454	7746964	0	-	0.575758	(0.57,1]	chrX	793085	86	INTRON	INTRON	ENSG00000285756	ENSG00000285756.2	ENST00000648217.1:ENST00000425492.5:ENST00000662024.1:ENST00000490920.2:ENST00000475317.5:ENST00000671583.1	lncRNA	lncRNA	lncRNA	lncRNA	1	27	2	2.99729	3.8358600000000003	4.67443	0.00538023	8.07515e-4	0.0642754	0.0258804
chr4	102802287	102802378	2213098	0	-	0.395604	(0.378,0.408]	chr4	216738	9	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	UBE2D3	ENSG00000109332.20	ENST00000453744.7:ENST00000394804.6:ENST00000618836.4:ENST00000394803.9:ENST00000394801.8:ENST00000343106.9:ENST00000508474.5:ENST00000503742.5:ENST00000321805.11:ENST00000350435.11:ENST00000338145.7:ENST00000349311.12:ENST00000504211.5:ENST00000505009.5:ENST00000357194.10:ENST00000505207.5:ENST00000507845.5:ENST00000502404.5:ENST00000508635.5:ENST00000505307.5:ENST00000510129.5:ENST00000508476.5:ENST00000502563.5:ENST00000508238.5:ENST00000514755.5:ENST00000508974.5:ENST00000502690.5:ENST00000510599.5:ENST00000508818.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	41	2	3.17089	3.835725	4.50056	0.015974	0.00357279	0.101453	0.0548435
chr15	65783638	65783737	6209710	0	-	0.353535	(0.35,0.378]	chr15	592617	164	INTRON	INTRON	DENND4A	ENSG00000174485.16	ENST00000443035.8:ENST00000431932.6:ENST00000564674.5:ENST00000568515.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	156	2	2.66576	3.8356649999999997	5.00557	0.00168985	1.65157e-7	0.037084	1.8594e-4
chr1	246209525	246209625	677730	0	-	0.34	(0.32,0.35]	chr1	79733	159	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000453676.5:ENST00000462422.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	44	2	2.48693	3.83554	5.18415	0.0338094	0.00333629	0.146709	0.0512081
chr1	46269475	46269572	96432	0	+	0.463918	(0.44,0.476]	chr1	12915	15	INTRON	INTRON	RAD54L	ENSG00000085999.13	ENST00000442598.5:ENST00000671528.1:ENST00000371975.9:ENST00000655446.1:ENST00000473251.2:ENST00000476687.2:ENST00000664182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	42	2	2.60774	3.8353099999999998	5.06288	0.0255874	0.00102416	0.120269	0.0294041
chr22	21612219	21612316	7482150	0	+	0.453608	(0.44,0.476]	chr22	763244	8	INTRON	INTRON	UBE2L3	ENSG00000185651.16	ENST00000458578.6:ENST00000545681.2:ENST00000696046.1:ENST00000342192.9:ENST00000496722.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	42	2	2.60774	3.8353099999999998	5.06288	0.0255874	0.00102416	0.120269	0.0294041
chr4	3186819	3186901	1918224	0	+	0.451219	(0.44,0.476]	chr4	192710	1	SS5_PROX	SS5_PROX:INTRON	HTT	ENSG00000197386.14	ENST00000680956.1:ENST00000680360.1:ENST00000681528.1:ENST00000680239.1:ENST00000355072.11:ENST00000680291.1:ENST00000510626.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	42	2	2.60774	3.8353099999999998	5.06288	0.0255874	0.00102416	0.120269	0.0294041
chr6	167039107	167039205	3033776	0	+	0.44898	(0.44,0.476]	chr6	282692	48	INTRON	INTRON	CEP43	ENSG00000213066.13	ENST00000622353.4:ENST00000366847.9:ENST00000349556.4	protein_coding	protein_coding	protein_coding	protein_coding	1	42	2	2.60774	3.8353099999999998	5.06288	0.0255874	0.00102416	0.120269	0.0294041
chr19	18479631	18479731	7152590	0	-	0.47	(0.44,0.476]	chr19	722886	38	INTRON	INTRON	ELL	ENSG00000105656.13	ENST00000262809.9:ENST00000594635.6:ENST00000596915.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	42	2	2.74063	3.8351550000000003	4.92968	0.0176095	0.00171443	0.105143	0.0381936
chr13	95295952	95296052	5639825	0	-	0.45	(0.44,0.476]	chr13	537181	262	INTRON	INTRON	ABCC4	ENSG00000125257.16	ENST00000645237.2:ENST00000643051.1:ENST00000643842.1:ENST00000646439.1:ENST00000643816.1:ENST00000536256.3:ENST00000643556.1:ENST00000629385.1:ENST00000642524.1:ENST00000645532.1:ENST00000644471.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	69	2	2.2193	3.835135	5.45097	0.00896114	1.90652e-4	0.0800073	0.0120089
chr7	87178845	87178944	3345900	0	+	0.323232	(0.32,0.35]	chr7	311675	38	INTRON	INTRON	DMTF1	ENSG00000135164.19	ENST00000413276.6:ENST00000447863.5:ENST00000579677.5:ENST00000425406.5:ENST00000547146.6:ENST00000579850.5:ENST00000331242.12:ENST00000430405.7:ENST00000432937.6:ENST00000584619.5:ENST00000394703.9:ENST00000412139.6:ENST00000425705.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	59	2	2.71053	3.83512	4.95971	0.00663522	0.00346747	0.0703181	0.0539802
chr16	23897451	23897550	6324375	0	+	0.40404	(0.378,0.408]	chr16	605701	37	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000498739.1	protein_coding	protein_coding	protein_coding	protein_coding	3	65	2	1.99678	3.83508	5.67338	0.0177959	3.05145e-4	0.113452	0.0161236
chr9	131738403	131738499	4363895	0	-	0.520833	(0.515,0.57]	chr9	401286	10	INTRON	INTRON	RAPGEF1	ENSG00000107263.19	ENST00000372195.5:ENST00000683357.1:ENST00000438647.3	protein_coding	protein_coding	protein_coding	protein_coding	2	48	2	2.39351	3.83501	5.27651	0.0100431	5.11033e-4	0.0881096	0.020816
chr10	35335727	35335827	4601753	0	-	0.53	(0.515,0.57]	chr10	423936	4	SS5_PROX	SS5_PROX:INTRON	CCNY-AS1	ENSG00000271335.6	ENST00000659251.1:ENST00000605499.1	lncRNA	lncRNA	lncRNA	lncRNA	1	36	2	2.98677	3.8349349999999998	4.6831	0.00632549	0.00471288	0.0722266	0.0600108
chr3	49996044	49996143	1423520	0	+	0.525253	(0.515,0.57]	chr3	149988	140	INTRON	INTRON	RBM6	ENSG00000004534.15	ENST00000442092.5:ENST00000443081.5:ENST00000419610.5:ENST00000441115.5:ENST00000422955.5:ENST00000454079.5:ENST00000266022.9:ENST00000425608.5:ENST00000434592.5:ENST00000464013.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	36	2	2.98677	3.8349349999999998	4.6831	0.00632549	0.00471288	0.0722266	0.0600108
chr7	5224247	5224344	3272313	0	+	0.546392	(0.515,0.57]	chr7	304133	12	INTRON	INTRON	WIPI2	ENSG00000157954.15	ENST00000401525.7:ENST00000288828.9:ENST00000404704.7:ENST00000466014.5:ENST00000382384.6:ENST00000484262.1:ENST00000480238.5:ENST00000488359.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	36	2	2.98677	3.8349349999999998	4.6831	0.00632549	0.00471288	0.0722266	0.0600108
chr9	91349408	91349507	4281099	0	-	0.262626	[0,0.28]	chr9	393807	58	INTRON	INTRON	AUH	ENSG00000148090.12	ENST00000303617.5:ENST00000375731.9:ENST00000478465.5:ENST00000475023.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	66	2	2.41169	3.83492	5.25815	0.0122872	0.0066548	0.0970106	0.0703807
chr8	28991822	28991921	3725875	0	+	0.383838	(0.378,0.408]	chr8	346276	113	INTRON	INTRON	HMBOX1	ENSG00000147421.18	ENST00000287701.15:ENST00000558662.5:ENST00000397358.7:ENST00000560599.5:ENST00000523613.5:ENST00000521516.5:ENST00000519047.5:ENST00000355231.9:ENST00000524238.3:ENST00000518080.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	41	2	2.54849	3.834885	5.12128	0.0273196	0.00251746	0.136494	0.0446195
chr2	30243680	30243780	726010	0	+	0.52	(0.515,0.57]	chr2	83940	88	INTRON	INTRON	LBH	ENSG00000213626.13	ENST00000395323.9:ENST00000412933.5:ENST00000404397.5:ENST00000406087.5:ENST00000464412.5:ENST00000401506.1:ENST00000467242.1:ENST00000407930.2:ENST00000484150.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	36	2	2.83188	3.83476	4.83764	0.0108207	0.00279527	0.0920575	0.0469265
chr5	157795851	157795949	2758012	0	-	0.520408	(0.515,0.57]	chr5	260260	10	EXON_MRNA	EXON_MRNA:INTRON	CLINT1	ENSG00000113282.14	ENST00000523094.5:ENST00000411809.7:ENST00000530742.5:ENST00000518855.5:ENST00000523908.5:ENST00000530302.1:ENST00000521615.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	36	2	2.83188	3.83476	4.83764	0.0108207	0.00279527	0.0920575	0.0469265
chr7	5230138	5230238	3272378	0	+	0.52	(0.515,0.57]	chr7	304153	4	SS5_PROX	SS5_PROX:INTRON	WIPI2	ENSG00000157954.15	ENST00000401525.7:ENST00000288828.9:ENST00000404704.7:ENST00000466014.5:ENST00000382384.6:ENST00000484262.1:ENST00000471851.1:ENST00000479690.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	36	2	2.83188	3.83476	4.83764	0.0108207	0.00279527	0.0920575	0.0469265
chrX	113948699	113948799	7867526	0	-	0.55	(0.515,0.57]	chrX	801544	3325	EXON_LNCRNA	EXON_LNCRNA:INTRON	XACT	ENSG00000241743.4	ENST00000468762.3:ENST00000674361.1	lncRNA	lncRNA	lncRNA	lncRNA	1	36	2	2.83188	3.83476	4.83764	0.0108207	0.00279527	0.0920575	0.0469265
chr1	58691804	58691896	467754	0	-	0.478261	(0.476,0.515]	chr1	56494	1	INTRON	INTRON	MYSM1	ENSG00000162601.11	ENST00000655340.1:ENST00000472487.6:ENST00000665648.1:ENST00000659812.1:ENST00000659108.1:ENST00000483003.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	116	2	3.32932	3.83469	4.34006	1.60666e-4	1.9213e-5	0.0109124	0.00355537
chr12	123392802	123392898	5242665	0	+	0.375	(0.35,0.378]	chr12	498191	10	INTRON	INTRON	KMT5A	ENSG00000183955.14	ENST00000402868.8:ENST00000437519.5:ENST00000478781.6:ENST00000461103.5:ENST00000437502.1:ENST00000485469.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	95	2	3.44435	3.834515	4.22468	0.00179102	2.51082e-5	0.0380316	0.00392664
chr1	162599659	162599758	238712	0	+	0.313131	(0.28,0.32]	chr1	28760	4	UTR3	UTR3:EXON_MRNA	UAP1	ENSG00000117143.14	ENST00000367925.6:ENST00000367926.9:ENST00000486089.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	45	2	2.80157	3.83444	4.86731	0.0147132	0.0116253	0.106558	0.0889104
chr11	68487077	68487177	4817596	0	+	0.3	(0.28,0.32]	chr11	448907	259	INTRON	INTRON	PPP6R3	ENSG00000110075.15	ENST00000530427.5:ENST00000528635.5:ENST00000529907.5:ENST00000533127.5:ENST00000534534.5:ENST00000529344.5:ENST00000524845.5:ENST00000393800.7:ENST00000265637.8:ENST00000524904.5:ENST00000393801.7:ENST00000265636.9:ENST00000529710.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	45	2	2.80157	3.83444	4.86731	0.0147132	0.0116253	0.106558	0.0889104
chr18	26059739	26059839	6959414	0	-	0.32	(0.28,0.32]	chr18	688450	16	INTRON	INTRON	SS18	ENSG00000141380.14	ENST00000415083.7:ENST00000542420.6:ENST00000579640.5:ENST00000269138.9:ENST00000269137.11:ENST00000585121.5:ENST00000539244.6:ENST00000585241.5:ENST00000578954.5:ENST00000579061.5:ENST00000577636.5:ENST00000584083.5:ENST00000578700.5:ENST00000582792.5:ENST00000581021.5:ENST00000577572.5:ENST00000582448.5:ENST00000581570.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	45	2	2.80157	3.83444	4.86731	0.0147132	0.0116253	0.106558	0.0889104
chr2	55606775	55606875	1125013	0	-	0.31	(0.28,0.32]	chr2	120677	23	INTRON	INTRON	PPP4R3B	ENSG00000275052.5	ENST00000616407.2:ENST00000611717.4:ENST00000616288.4:ENST00000470801.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	45	2	2.80157	3.83444	4.86731	0.0147132	0.0116253	0.106558	0.0889104
chr6	147764744	147764844	2991646	0	+	0.3	(0.28,0.32]	chr6	280177	273	INTRON	INTRON	ENSG00000227681	ENSG00000227681.5	ENST00000427015.1	lncRNA	lncRNA	lncRNA	lncRNA	1	45	2	2.80157	3.83444	4.86731	0.0147132	0.0116253	0.106558	0.0889104
chr7	158638698	158638797	3688097	0	-	0.292929	(0.28,0.32]	chr7	342108	66	INTRON	INTRON	NCAPG2	ENSG00000146918.20	ENST00000356309.8:ENST00000432615.5:ENST00000409423.5:ENST00000441982.5:ENST00000467785.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	45	2	2.80157	3.83444	4.86731	0.0147132	0.0116253	0.106558	0.0889104
chr15	25428397	25428496	6121736	0	-	0.292929	(0.28,0.32]	chr15	582937	9	INTRON	INTRON	UBE3A	ENSG00000114062.22	ENST00000648336.2:ENST00000438097.6:ENST00000635914.1:ENST00000638155.1:ENST00000637886.1:ENST00000638011.1:ENST00000649550.1:ENST00000650110.1:ENST00000630424.2:ENST00000566215.5:ENST00000428984.6:ENST00000675177.1:ENST00000675593.1:ENST00000625778.3:ENST00000675000.1:ENST00000626793.2:ENST00000628733.2:ENST00000630907.2:ENST00000675038.1:ENST00000629886.2:ENST00000628267.2:ENST00000629252.2:ENST00000625681.2:ENST00000627018.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	45	2	2.73945	3.83437	4.92929	0.017681	0.0098607	0.11319	0.0838128
chr6	167003247	167003347	3033404	0	+	0.32	(0.28,0.32]	chr6	282631	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CEP43	ENSG00000213066.13	ENST00000622353.4:ENST00000366847.9:ENST00000349556.4:ENST00000494781.5:ENST00000476078.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	45	2	2.73945	3.83437	4.92929	0.017681	0.0098607	0.11319	0.0838128
chr7	158819050	158819150	3689709	0	-	0.36	(0.35,0.378]	chr7	342421	196	INTRON	INTRON	ESYT2	ENSG00000117868.18	ENST00000251527.10:ENST00000275418.13:ENST00000652148.1:ENST00000483958.5:ENST00000497111.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	69	2	2.56634	3.8343	5.10226	0.00327038	0.00190773	0.0508595	0.0403772
chr3	155853638	155853724	1844342	0	-	0.430233	(0.408,0.44]	chr3	185568	5	CDS	CDS:EXON_MRNA	SLC33A1	ENSG00000169359.16	ENST00000643144.2:ENST00000359479.7:ENST00000468581.2:ENST00000646424.1:ENST00000644094.1:ENST00000642438.1:ENST00000644855.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	53	2	2.64829	3.8342849999999995	5.02028	0.00400062	0.00303216	0.057767	0.0493883
chr1	39247017	39247117	76315	0	+	0.45	(0.44,0.476]	chr1	9716	154	INTRON	INTRON	MACF1	ENSG00000127603.32	ENST00000361689.7:ENST00000689911.1:ENST00000567887.5:ENST00000372915.8:ENST00000472385.2:ENST00000693209.1:ENST00000524432.5:ENST00000467673.5:ENST00000688212.1:ENST00000672812.1:ENST00000564288.6:ENST00000494012.1:ENST00000480624.5:ENST00000671089.2:ENST00000690080.1:ENST00000469366.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	40	2	3.14559	3.8341450000000004	4.5227	0.0128818	0.00384923	0.0926667	0.0562562
chr1	235323714	235323814	663818	0	-	0.47	(0.44,0.476]	chr1	78552	626	INTRON	INTRON	ARID4B	ENSG00000054267.22	ENST00000349213.7:ENST00000366603.6:ENST00000264183.9:ENST00000421364.5:ENST00000491632.5:ENST00000418304.1:ENST00000466653.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	40	2	3.14559	3.8341450000000004	4.5227	0.0128818	0.00384923	0.0926667	0.0562562
chr11	68609628	68609728	4818857	0	+	0.47	(0.44,0.476]	chr11	449068	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PPP6R3	ENSG00000110075.15	ENST00000534534.5:ENST00000524845.5:ENST00000393800.7:ENST00000265637.8:ENST00000524904.5:ENST00000393801.7:ENST00000265636.9:ENST00000529710.5:ENST00000527403.6:ENST00000534190.5:ENST00000526307.5:ENST00000526593.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	40	2	3.14559	3.8341450000000004	4.5227	0.0128818	0.00384923	0.0926667	0.0562562
chr5	109363916	109364015	2701905	0	-	0.474747	(0.44,0.476]	chr5	254334	5	INTRON	INTRON	PJA2	ENSG00000198961.10	ENST00000361557.4:ENST00000361189.7	protein_coding	protein_coding	protein_coding	protein_coding	1	40	2	3.14559	3.8341450000000004	4.5227	0.0128818	0.00384923	0.0926667	0.0562562
chr8	30756025	30756118	3727815	0	+	0.462366	(0.44,0.476]	chr8	346492	9	INTRON	INTRON	UBXN8	ENSG00000104691.16	ENST00000620074.5:ENST00000265616.10:ENST00000380154.9:ENST00000341403.9:ENST00000615729.4:ENST00000518059.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	40	2	3.14559	3.8341450000000004	4.5227	0.0128818	0.00384923	0.0926667	0.0562562
chr3	9697510	9697610	1360270	0	+	0.4	(0.378,0.408]	chr3	142945	4	SS3_PROX	SS3_PROX:INTRON	MTMR14	ENSG00000163719.20	ENST00000353332.9:ENST00000420925.5:ENST00000447144.5:ENST00000296003.9:ENST00000351233.9:ENST00000414996.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	40	2	2.85854	3.83411	4.80968	0.0107837	0.00679828	0.0920575	0.0711802
chr6	31504123	31504222	2842843	0	+	0.383838	(0.378,0.408]	chr6	267489	55	INTRON	INTRON	MICB	ENSG00000204516.10	ENST00000538442.5:ENST00000399150.7:ENST00000252229.7	protein_coding	protein_coding	protein_coding	protein_coding	1	40	2	2.85854	3.83411	4.80968	0.0107837	0.00679828	0.0920575	0.0711802
chr16	2080470	2080564	6277266	0	+	0.489362	(0.476,0.515]	chr16	600109	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	TSC2	ENSG00000103197.18	ENST00000643946.1:ENST00000643088.1:ENST00000382538.10:ENST00000219476.9:ENST00000642936.1:ENST00000401874.7:ENST00000644335.1:ENST00000646388.1:ENST00000439673.6:ENST00000350773.9:ENST00000439117.6:ENST00000644329.1:ENST00000642797.1:ENST00000644043.1:ENST00000642561.1:ENST00000568454.6:ENST00000644399.1:ENST00000646634.1:ENST00000642365.1:ENST00000645024.1:ENST00000497886.5:ENST00000647042.1:ENST00000644722.1:ENST00000646674.1:ENST00000647180.1:ENST00000643426.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	43	2	2.3223	3.8340949999999996	5.34589	0.0519312	3.224e-4	0.159306	0.0159645
chr2	96920664	96920764	1182436	0	-	0.42	(0.408,0.44]	chr2	126742	1	SS5_PROX	SS5_PROX:INTRON	FAM178B	ENSG00000168754.15	ENST00000490605.3	protein_coding	protein_coding	protein_coding	protein_coding	2	53	2	2.27464	3.83392	5.3932	0.0158016	7.81492e-4	0.109464	0.0257168
chr20	5560007	5560076	7311815	0	-	0.275362	[0,0.28]	chr20	744523	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	GPCPD1	ENSG00000125772.14	ENST00000379019.7:ENST00000481038.5:ENST00000418646.5:ENST00000633552.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	49	2	2.90797	3.833805	4.75964	0.0232081	0.0118539	0.118148	0.0962115
chr1	153625021	153625121	556179	0	-	0.52	(0.515,0.57]	chr1	65797	56	INTRON	INTRON	S100A13	ENSG00000189171.15	ENST00000440685.7:ENST00000339556.8:ENST00000476133.6:ENST00000392623.5:ENST00000392622.3:ENST00000491177.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	37	2	2.56306	3.83377	5.10448	0.0247751	0.0010345	0.131869	0.029231300000000002
chr1	8622322	8622421	371826	0	-	0.40404	(0.378,0.408]	chr1	43527	73	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000400907.6:ENST00000656437.1:ENST00000659924.1:ENST00000480342.5:ENST00000514428.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	59	2	2.00398	3.8337399999999997	5.6635	0.0393906	7.77533e-5	0.143072	0.00735438
chr4	174292069	174292169	2082661	0	+	0.38	(0.378,0.408]	chr4	205805	61	INTRON	INTRON	CEP44	ENSG00000164118.13	ENST00000505124.5:ENST00000457424.6:ENST00000396791.7:ENST00000503780.6:ENST00000514712.5:ENST00000515299.5:ENST00000503053.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	74	2	2.15574	3.8337399999999997	5.51174	0.00519611	5.93655e-4	0.0654762	0.0225024
chr14	34961633	34961733	5868960	0	-	0.32	(0.28,0.32]	chr14	557461	63	INTRON	INTRON	SRP54-AS1	ENSG00000258704.7	ENST00000692503.1:ENST00000690110.1:ENST00000690001.1:ENST00000688072.1:ENST00000693002.1:ENST00000556355.5:ENST00000555015.5:ENST00000693259.1:ENST00000636540.1	transcribed_unitary_pseudogene	processed_transcript	transcribed_unitary_pseudogene	processed_transcript:transcribed_unitary_pseudogene	2	61	2	2.1895	3.8336449999999997	5.47779	0.0227063	0.00187048	0.124921	0.0390476
chr16	23685084	23685183	6323694	0	+	0.262626	[0,0.28]	chr16	605659	6	INTRON	INTRON	PLK1	ENSG00000166851.15	ENST00000562272.5:ENST00000300093.9:ENST00000562407.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	49	2	2.5055	3.8334	5.1613	0.0359431	0.00866441	0.152322	0.0787025
chr9	37201440	37201540	4118471	0	+	0.24	[0,0.28]	chr9	375389	145	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000461038.5:ENST00000488607.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	49	2	2.5055	3.8334	5.1613	0.0359431	0.00866441	0.152322	0.0787025
chr5	145743170	145743270	2745713	0	-	0.49	(0.476,0.515]	chr5	258674	385	INTRON	INTRON	PRELID2	ENSG00000186314.12	ENST00000510259.5:ENST00000510594.1:ENST00000515161.1	protein_coding	processed_transcript	protein_coding	processed_transcript	1	43	2	3.05152	3.833355	4.61519	0.0064848	0.00528365	0.0699952	0.0656295
chr16	23465597	23465696	6464113	0	-	0.515152	(0.476,0.515]	chr16	623810	3	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	GGA2	ENSG00000103365.15	ENST00000309859.8:ENST00000567468.5	protein_coding	protein_coding	protein_coding	protein_coding	4	73	2	1.78315	3.83326	5.88337	0.0215899	7.59355e-5	0.123836	0.00777694
chr16	88783302	88783402	6540203	0	-	0.32	(0.28,0.32]	chr16	633998	335	INTRON	INTRON	PIEZO1	ENSG00000103335.22	ENST00000301015.14	protein_coding	protein_coding	protein_coding	protein_coding	2	67	2	2.22069	3.83326	5.44583	0.0243177	5.8721e-4	0.12011	0.0220073
chr11	2962682	2962781	4891691	0	-	0.393939	(0.378,0.408]	chr11	458309	24	INTRON	INTRON	NAP1L4	ENSG00000205531.13	ENST00000620138.4:ENST00000380542.9:ENST00000526115.5:ENST00000492685.5:ENST00000528363.5:ENST00000532325.6:ENST00000448187.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	55	2	2.78867	3.833145	4.87762	0.00553849	0.00226991	0.0648867	0.0437013
chr8	38317858	38317955	3936769	0	-	0.402062	(0.378,0.408]	chr8	360773	16	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	NSD3	ENSG00000147548.17	ENST00000317025.13:ENST00000433384.6:ENST00000527502.5:ENST00000316985.7:ENST00000525081.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	55	2	2.78867	3.833145	4.87762	0.00553849	0.00226991	0.0648867	0.0437013
chr14	74787111	74787210	5789018	0	+	0.313131	(0.28,0.32]	chr14	548446	44	INTRON	INTRON	YLPM1	ENSG00000119596.18	ENST00000325680.12:ENST00000552421.5:ENST00000549293.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	46	2	3.07744	3.833095	4.58875	0.0230574	0.00604536	0.118056	0.0700813
chr7	64909975	64910075	3321155	0	+	0.3	(0.28,0.32]	chr7	308781	62	INTRON	INTRON	ZNF273	ENSG00000198039.12	ENST00000527278.5:ENST00000489672.5:ENST00000476120.2:ENST00000395375.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	46	2	3.07744	3.833095	4.58875	0.0230574	0.00604536	0.118056	0.0700813
chr12	121342865	121342964	5437090	0	-	0.232323	[0,0.28]	chr12	519915	4	INTRON	INTRON	ANAPC5	ENSG00000089053.13	ENST00000261819.8:ENST00000541887.5:ENST00000534976.5:ENST00000441917.6:ENST00000541652.5:ENST00000544442.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	54	2	2.27119	3.8330699999999998	5.39495	0.070351	0.00133175	0.184298	0.0335129
chr19	57860936	57861035	7106147	0	+	0.494949	(0.476,0.515]	chr19	713245	9	UTR3	UTR3:EXON_MRNA	ZNF587	ENSG00000198466.12	ENST00000339656.8:ENST00000419854.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	86	2	3.67544	3.8327999999999998	3.99016	5.51624e-4	7.96444e-5	0.0216014	0.00742553
chr1	39565478	39565578	427670	0	-	0.52	(0.515,0.57]	chr1	51908	1	SS3_PROX	SS3_PROX:INTRON	PABPC4	ENSG00000090621.15	ENST00000677006.1:ENST00000527718.2:ENST00000676859.1:ENST00000372858.8:ENST00000372856.7:ENST00000372857.7:ENST00000372862.7:ENST00000676523.1:ENST00000677548.1:ENST00000678980.1:ENST00000677244.1:ENST00000677609.1:ENST00000679246.1:ENST00000678287.1:ENST00000678625.1:ENST00000470443.6:ENST00000677860.1:ENST00000676863.1:ENST00000678894.1:ENST00000421687.6:ENST00000525669.5:ENST00000513632.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	84	2	3.25412	3.83265	4.41118	0.00224554	7.5736e-6	0.0435144	0.00206677
chr8	11809230	11809317	3702590	0	+	0.37931	(0.378,0.408]	chr8	343496	2	UTR5	UTR5:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	FDFT1	ENSG00000079459.13	ENST00000538689.4:ENST00000615631.4:ENST00000618539.4:ENST00000530337.5:ENST00000623368.3:ENST00000446331.6:ENST00000443614.6:ENST00000220584.9:ENST00000525607.5:ENST00000525283.5:ENST00000529464.5:ENST00000525900.5:ENST00000528812.5:ENST00000622850.2:ENST00000530664.5:ENST00000525954.5:ENST00000531733.1:ENST00000531249.2:ENST00000532266.5:ENST00000528643.5:ENST00000525777.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	90	2	2.48899	3.83263	5.17627	0.00208234	5.72628e-4	0.0411801	0.0217398
chr1	155694939	155695039	229571	0	+	0.4	(0.378,0.408]	chr1	26994	53	INTRON	INTRON	DAP3	ENSG00000132676.16	ENST00000471642.6:ENST00000471214.5:ENST00000343043.7:ENST00000368336.10:ENST00000535183.5:ENST00000421487.6:ENST00000496863.5:ENST00000465375.5:ENST00000462002.5:ENST00000470830.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	40	2	2.92665	3.8325199999999997	4.73839	0.0086017	0.00837252	0.083729	0.0774402
chr10	125077204	125077304	4713501	0	-	0.39	(0.378,0.408]	chr10	434897	377	INTRON	INTRON	CTBP2	ENSG00000175029.17	ENST00000337195.9:ENST00000411419.6:ENST00000494626.6:ENST00000531469.5:ENST00000460976.5:ENST00000476817.1:ENST00000530884.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	40	2	2.92665	3.8325199999999997	4.73839	0.0086017	0.00837252	0.083729	0.0774402
chr1	160253805	160253905	571524	0	-	0.38	(0.378,0.408]	chr1	69176	94	INTRON	INTRON	DCAF8	ENSG00000132716.19	ENST00000326837.6:ENST00000368073.7:ENST00000368074.6:ENST00000461888.5:ENST00000475733.5:ENST00000610139.5:ENST00000447377.5:ENST00000495887.1:ENST00000440682.5:ENST00000407642.6:ENST00000419626.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	55	2	2.11103	3.8324550000000004	5.55388	0.0266911	5.01023e-4	0.134419	0.0206993
chr1	1687690	1687789	360913	0	-	0.50505	(0.476,0.515]	chr1	42013	105	INTRON	INTRON	SLC35E2B	ENSG00000189339.12	ENST00000614300.4:ENST00000617444.5:ENST00000611123.1:ENST00000481276.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	42	2	2.8863	3.8324299999999996	4.77856	0.0111679	0.00305743	0.0877435	0.0509893
chr11	134345429	134345529	4887084	0	+	0.5	(0.476,0.515]	chr11	457146	3	SS5_PROX	SS5_PROX:INTRON	GLB1L2	ENSG00000149328.15	ENST00000339772.9:ENST00000535456.7	protein_coding	protein_coding	protein_coding	protein_coding	1	42	2	2.8863	3.8324299999999996	4.77856	0.0111679	0.00305743	0.0877435	0.0509893
chr9	36584310	36584408	4116585	0	+	0.510204	(0.476,0.515]	chr9	375250	2	INTRON	INTRON	MELK	ENSG00000165304.8	ENST00000543751.5:ENST00000536860.5:ENST00000541717.4:ENST00000536329.5:ENST00000627766.2:ENST00000298048.7:ENST00000536987.5:ENST00000545008.5:ENST00000495529.5:ENST00000489766.5:ENST00000625974.2:ENST00000487398.3:ENST00000626154.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	42	2	2.8863	3.8324299999999996	4.77856	0.0111679	0.00305743	0.0877435	0.0509893
chr13	110989180	110989280	5544282	0	+	0.32	(0.28,0.32]	chr13	529727	54	INTRON	INTRON	LINC00431	ENSG00000225760.2	ENST00000440735.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	1	46	2	2.46018	3.83239	5.2046	0.0375904	0.00448664	0.156054	0.0593175
chr16	22528107	22528198	6322904	0	+	0.384615	(0.378,0.408]	chr16	605496	1	SS5_PROX	SS5_PROX:INTRON	NPIPB5	ENSG00000243716.11	ENST00000415654.5:ENST00000415833.6:ENST00000424340.6:ENST00000521555.6:ENST00000517539.5:ENST00000541664.5:ENST00000528249.5:ENST00000543997.1:ENST00000539604.5:ENST00000621622.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	40	2	2.78705	3.832335	4.87762	0.0135539	0.00553849	0.101363	0.0648867
chr2	96187935	96188026	1179778	0	-	0.395604	(0.378,0.408]	chr2	126125	8	EXON_MRNA	EXON_MRNA:INTRON	STARD7	ENSG00000084090.14	ENST00000337288.10:ENST00000479456.1:ENST00000462501.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	40	2	2.78705	3.832335	4.87762	0.0135539	0.00553849	0.101363	0.0648867
chr1	12001017	12001113	26655	0	+	0.520833	(0.515,0.57]	chr1	3121	8	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	MFN2	ENSG00000116688.18	ENST00000444836.5:ENST00000674817.1:ENST00000675053.1:ENST00000675298.1:ENST00000675817.1:ENST00000675194.1:ENST00000674548.1:ENST00000675959.1:ENST00000675872.1:ENST00000676426.1:ENST00000674658.1:ENST00000674910.1:ENST00000675231.1:ENST00000235329.10:ENST00000676293.1:ENST00000675919.1:ENST00000675987.1:ENST00000675512.1:ENST00000675113.1:ENST00000675483.1:ENST00000675528.1:ENST00000675404.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	223	2	3.23842	3.83218	4.42594	2.76967e-6	6.86547e-8	0.00118091	1.14014e-4
chr20	3972840	3972939	7308979	0	-	0.545455	(0.515,0.57]	chr20	744293	85	INTRON	INTRON	RNF24	ENSG00000101236.17	ENST00000336095.10:ENST00000358395.11:ENST00000432261.6:ENST00000545616.2	protein_coding	protein_coding	protein_coding	protein_coding	5	74	2	1.64415	3.83217	6.02019	0.0231656	1.31473e-5	0.127036	0.00286967
chr12	133081431	133081531	5252850	0	+	0.49	(0.476,0.515]	chr12	499703	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ZNF140	ENSG00000196387.10	ENST00000356456.9:ENST00000412146.6:ENST00000544426.5:ENST00000440984.3:ENST00000355557.7:ENST00000440550.6:ENST00000319849.7:ENST00000392041.8:ENST00000536790.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	40	2	3.13389	3.8320600000000002	4.53023	0.0119748	0.00405473	0.0899583	0.0578376
chr7	157183102	157183194	3454389	0	+	0.456522	(0.44,0.476]	chr7	322940	4	INTRON	INTRON	UBE3C	ENSG00000009335.18	ENST00000611269.4:ENST00000348165.10:ENST00000389103.4	protein_coding	protein_coding	protein_coding	protein_coding	3	68	2	1.94723	3.83192	5.71661	0.0227424	5.13947e-5	0.117618	0.00585477
chr10	35335427	35335527	4601750	0	-	0.35	(0.32,0.35]	chr10	423936	1	SS5_PROX	SS5_PROX:INTRON	CCNY-AS1	ENSG00000271335.6	ENST00000659251.1:ENST00000605499.1	lncRNA	lncRNA	lncRNA	lncRNA	2	58	2	2.58753	3.83191	5.07629	0.00560122	0.00468114	0.0678837	0.0600108
chr19	1847202	1847302	7113819	0	-	0.33	(0.32,0.35]	chr19	714891	160	INTRON	INTRON	REXO1	ENSG00000079313.15	ENST00000170168.9:ENST00000587524.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	83	2	1.49965	3.83191	6.16417	0.0542985	7.39992e-5	0.182243	0.00770735
chr3	160422067	160422162	1544840	0	+	0.326316	(0.32,0.35]	chr3	160739	8	INTRON	INTRON	SMC4	ENSG00000113810.16	ENST00000357388.8:ENST00000469762.5:ENST00000469858.5:ENST00000462787.5:ENST00000344722.5:ENST00000462668.5:ENST00000497203.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	58	2	2.58753	3.83191	5.07629	0.00560122	0.00468114	0.0678837	0.0600108
chr3	172762004	172762093	1563330	0	+	0.348315	(0.32,0.35]	chr3	161751	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ECT2	ENSG00000114346.14	ENST00000232458.9:ENST00000540509.5:ENST00000392692.8:ENST00000417960.5:ENST00000441497.6	protein_coding	protein_coding	protein_coding	protein_coding	5	91	2	2.15523	3.83188	5.50853	0.00338289	0.0010959399999999999	0.0534907	0.0304174
chr2	32521065	32521161	732491	0	+	0.3125	(0.28,0.32]	chr2	84590	18	INTRON	INTRON	BIRC6	ENSG00000115760.15	ENST00000421745.7:ENST00000648282.1	protein_coding	protein_coding	protein_coding	protein_coding	1	45	2	2.86113	3.83184	4.80255	0.0137406	0.0122675	0.0969406	0.0949306
chr11	120393858	120393957	4876775	0	+	0.313131	(0.28,0.32]	chr11	455802	80	INTRON	INTRON	ARHGEF12	ENSG00000196914.9	ENST00000397843.7:ENST00000356641.7:ENST00000532993.5:ENST00000529970.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	45	2	2.67453	3.831625	4.98872	0.021289	0.00838468	0.123318	0.0774402
chr12	1728926	1729026	5064547	0	+	0.3	(0.28,0.32]	chr12	477866	256	INTRON	INTRON	ADIPOR2	ENSG00000006831.10	ENST00000537545.1:ENST00000357103.5:ENST00000540974.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	45	2	2.67453	3.831625	4.98872	0.021289	0.00838468	0.123318	0.0774402
chr7	2751360	2751460	3468517	0	-	0.3	(0.28,0.32]	chr7	324325	175	INTRON	INTRON	GNA12	ENSG00000146535.14	ENST00000275364.8:ENST00000407904.7:ENST00000491117.5:ENST00000407653.1:ENST00000496740.6:ENST00000471281.5:ENST00000485329.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	45	2	2.67453	3.831625	4.98872	0.021289	0.00838468	0.123318	0.0774402
chr12	121564383	121564482	5439058	0	-	0.484848	(0.476,0.515]	chr12	520064	144	INTRON	INTRON	KDM2B	ENSG00000089094.20	ENST00000377071.9:ENST00000377069.8:ENST00000611216.4:ENST00000543025.5:ENST00000538046.6:ENST00000446152.6:ENST00000539394.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	86	2	3.77334	3.831615	3.88989	3.52709e-4	1.35929e-4	0.0174637	0.0100405
chr12	55829437	55829536	5332928	0	-	0.50505	(0.476,0.515]	chr12	509203	4	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	DNAJC14	ENSG00000135392.19	ENST00000357606.7:ENST00000678005.2:ENST00000547445.2:ENST00000546957.2:ENST00000317287.5	protein_coding	protein_coding	protein_coding	protein_coding	1	40	2	2.56868	3.831455	5.09423	0.0256676	0.00204588	0.133676	0.04086
chr14	73349825	73349925	5918215	0	-	0.5	(0.476,0.515]	chr14	562236	262	INTRON	INTRON	NUMB	ENSG00000133961.21	ENST00000554546.5:ENST00000535282.5:ENST00000359560.7:ENST00000355058.7:ENST00000544991.7:ENST00000555238.6:ENST00000557597.5:ENST00000356296.8:ENST00000555394.5:ENST00000559312.5:ENST00000560335.5:ENST00000555738.6:ENST00000554521.6:ENST00000555859.5:ENST00000554394.5:ENST00000555307.5:ENST00000554315.5:ENST00000555987.5:ENST00000556112.5:ENST00000557774.5:ENST00000554818.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	40	2	2.56868	3.831455	5.09423	0.0256676	0.00204588	0.133676	0.04086
chr16	4720151	4720251	6438114	0	-	0.53	(0.515,0.57]	chr16	619996	22	INTRON	INTRON	ANKS3	ENSG00000168096.15	ENST00000450067.6:ENST00000614075.4:ENST00000304283.9:ENST00000592077.5:ENST00000590193.5:ENST00000446014.6:ENST00000591653.5:ENST00000590803.5:ENST00000585773.5:ENST00000590730.5:ENST00000586605.5:ENST00000592421.5:ENST00000592068.5:ENST00000586166.5:ENST00000592698.5:ENST00000586159.5:ENST00000586632.1:ENST00000589065.5:ENST00000593120.5:ENST00000592711.5:ENST00000591281.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	120	2	3.00295	3.8313299999999995	4.65971	2.06595e-4	8.15659e-7	0.0131276	5.09591e-4
chr1	246905440	246905540	681692	0	-	0.45	(0.44,0.476]	chr1	80013	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	AHCTF1	ENSG00000153207.16	ENST00000648844.2:ENST00000326225.3:ENST00000366508.5	protein_coding	protein_coding	protein_coding	protein_coding	5	80	2	1.82106	3.831265	5.84147	0.0124107	1.03947e-4	0.0973643	0.00915599
chr8	55809391	55809490	3754160	0	+	0.424242	(0.408,0.44]	chr8	349228	40	INTRON	INTRON	TGS1	ENSG00000137574.11	ENST00000260129.6:ENST00000523948.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	63	2	2.22268	3.83104	5.4394	0.00770925	6.50925e-4	0.0784002	0.0232863
chr1	175984253	175984353	589464	0	-	0.59	(0.57,1]	chr1	70872	159	INTRON	INTRON	COP1	ENSG00000143207.21	ENST00000367669.8:ENST00000367667.5:ENST00000461830.6:ENST00000367666.5:ENST00000649803.1:ENST00000308769.12	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	28	2	2.53383	3.83098	5.12813	0.02547	8.62401e-5	0.12011	0.00783027
chr3	186932690	186932789	1586194	0	+	0.383838	(0.378,0.408]	chr3	164314	9	INTRON	INTRON	ST6GAL1	ENSG00000073849.16	ENST00000676786.1:ENST00000463542.1:ENST00000169298.8:ENST00000457772.6:ENST00000455441.5:ENST00000427315.5:ENST00000677292.1:ENST00000468614.1:ENST00000458216.5:ENST00000430309.5:ENST00000417392.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	54	2	2.23831	3.830945	5.42358	0.0179575	8.39231e-4	0.114265	0.0266487
chr10	101813378	101813454	4680926	0	-	0.342105	(0.32,0.35]	chr10	432017	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	OGA	ENSG00000198408.14	ENST00000439817.5:ENST00000361464.8:ENST00000357797.9:ENST00000370094.7:ENST00000429860.1	protein_coding	protein_coding	protein_coding	protein_coding	4	165	2	2.69611	3.830835	4.96556	0.00166606	3.04975e-7	0.0369207	2.75296e-4
chr1	40065059	40065152	79874	0	+	0.430108	(0.408,0.44]	chr1	10366	1	INTRON	INTRON	CAP1	ENSG00000131236.18	ENST00000372797.7:ENST00000372802.5:ENST00000421589.5:ENST00000414893.5:ENST00000372792.7:ENST00000372805.8:ENST00000414281.5:ENST00000420216.5:ENST00000372798.5:ENST00000340450.7:ENST00000435719.5:ENST00000427843.5:ENST00000424977.1:ENST00000417287.5	protein_coding	protein_coding	protein_coding	protein_coding	1	40	2	2.58179	3.83081	5.07983	0.024638	0.00247652	0.131869	0.0446195
chr16	18907786	18907885	6457923	0	-	0.424242	(0.408,0.44]	chr16	622891	74	INTRON	INTRON	SMG1	ENSG00000157106.18	ENST00000446231.7:ENST00000532700.6:ENST00000569122.1:ENST00000563836.1	protein_coding	protein_coding	protein_coding	protein_coding	1	40	2	2.58179	3.83081	5.07983	0.024638	0.00247652	0.131869	0.0446195
chr19	23770026	23770126	7042499	0	+	0.42	(0.408,0.44]	chr19	702194	65	INTRON	INTRON	RPSAP58	ENSG00000288920.1	ENST00000471224.5:ENST00000692590.1:ENST00000475499.2:ENST00000686829.1:ENST00000689525.1:ENST00000691397.1:ENST00000688405.1:ENST00000692739.1:ENST00000687994.1:ENST00000484897.4:ENST00000685013.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	40	2	2.58179	3.83081	5.07983	0.024638	0.00247652	0.131869	0.0446195
chr19	10317357	10317453	7135337	0	-	0.40625	(0.378,0.408]	chr19	719323	13	UTR3	UTR3:EXON_MRNA	RAVER1	ENSG00000161847.14	ENST00000617231.5:ENST00000592208.5:ENST00000611074.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	222	2	3.32404	3.83079	4.33754	8.51468e-6	8.76224e-7	0.00210871	5.75694e-4
chr17	47174063	47174163	6789241	0	-	0.35	(0.32,0.35]	chr17	669633	16	INTRON	INTRON	CDC27	ENSG00000004897.12	ENST00000066544.8:ENST00000531206.5:ENST00000533415.5:ENST00000527547.5:ENST00000526866.5:ENST00000525495.6:ENST00000573550.5:ENST00000575483.5:ENST00000532893.5:ENST00000528748.5:ENST00000532575.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	43	2	2.96746	3.83063	4.6938	0.0137794	0.00815799	0.0949306	0.0810802
chr5	54114409	54114509	2618953	0	-	0.35	(0.32,0.35]	chr5	248848	6	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2:ENST00000505630.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	43	2	2.96746	3.83063	4.6938	0.0137794	0.00815799	0.0949306	0.0810802
chr12	116096911	116096996	5423736	0	-	0.341176	(0.32,0.35]	chr12	518250	1	SS3_PROX	SS3_PROX:INTRON	MED13L	ENSG00000123066.9	ENST00000281928.9:ENST00000650226.1:ENST00000548743.2:ENST00000647567.1	protein_coding	protein_coding	protein_coding	protein_coding	3	76	2	2.7634	3.83054	4.89768	0.00793135	8.19858e-4	0.076155	0.026165
chr6	98870910	98871009	3164806	0	-	0.444444	(0.44,0.476]	chr6	295170	25	UTR3	UTR3:EXON_MRNA	FBXL4	ENSG00000112234.9	ENST00000369244.7	protein_coding	protein_coding	protein_coding	protein_coding	1	42	2	2.80275	3.8304600000000004	4.85817	0.0146513	0.00223254	0.0982604	0.0435144
chr1	148158057	148158155	213477	0	+	0.357143	(0.35,0.378]	chr1	23708	14	EXON_LNCRNA	EXON_LNCRNA:INTRON	LINC02805	ENSG00000232265.8	ENST00000663793.1:ENST00000665006.1:ENST00000657111.1:ENST00000668803.1	lncRNA	lncRNA	lncRNA	lncRNA	1	44	2	2.30249	3.8303849999999997	5.35828	0.0519726	0.00135282	0.176696	0.0336321
chr9	130613700	130613787	4213438	0	+	0.298851	(0.28,0.32]	chr9	386296	3	INTRON	INTRON	FUBP3	ENSG00000107164.16	ENST00000319725.10:ENST00000650723.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	50	2	2.2609	3.83026	5.39962	0.0671429	7.06751e-4	0.183051	0.0241881
chr2	105043599	105043698	842992	0	+	0.343434	(0.32,0.35]	chr2	94408	50	INTRON	INTRON	MRPS9	ENSG00000135972.9	ENST00000258455.8	protein_coding	protein_coding	protein_coding	protein_coding	1	43	2	2.64129	3.8302300000000002	5.01917	0.0222819	0.0055659	0.124303	0.0648867
chr1	100400123	100400223	173106	0	+	0.28	[0,0.28]	chr1	18824	89	INTRON	INTRON	CDC14A	ENSG00000079335.20	ENST00000646665.1:ENST00000644844.1:ENST00000635056.2:ENST00000647005.1:ENST00000647203.1:ENST00000644676.1:ENST00000361544.11:ENST00000370124.8:ENST00000336454.5:ENST00000644813.1:ENST00000455467.6:ENST00000646563.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	66	2	2.10688	3.8302199999999997	5.55356	0.0307985	0.00278704	0.143385	0.0469265
chr21	36059280	36059378	7458712	0	-	0.591837	(0.57,1]	chr21	760019	5	UTR5	UTR5:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SETD4	ENSG00000185917.14	ENST00000399212.5:ENST00000332131.9:ENST00000481477.5:ENST00000399215.5:ENST00000399201.5:ENST00000399208.6:ENST00000399205.5:ENST00000399207.5:ENST00000424303.5:ENST00000429161.5:ENST00000446166.5:ENST00000442559.5:ENST00000443703.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	28	2	3.34751	3.83014	4.31277	0.00346264	0.00122677	0.0539802	0.0320791
chr17	1356926	1357025	6699168	0	-	0.474747	(0.44,0.476]	chr17	655527	22	INTRON	INTRON	YWHAE	ENSG00000108953.17	ENST00000264335.13:ENST00000466227.6:ENST00000571732.5:ENST00000573026.1:ENST00000496706.1:ENST00000573196.5:ENST00000575977.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	78	2	1.90375	3.83012	5.75649	0.0156406	4.17314e-5	0.101393	0.00523306
chr16	29610509	29610609	6471706	0	-	0.58	(0.57,1]	chr16	625301	157	INTRON	INTRON	ENSG00000288632	ENSG00000288632.1	ENST00000675579.1	lncRNA	lncRNA	lncRNA	lncRNA	3	63	2	3.50161	3.8300400000000003	4.15847	3.17447e-5	1.26324e-5	0.00449886	0.00281675
chr17	35597432	35597531	6599636	0	+	0.383838	(0.378,0.408]	chr17	642232	30	INTRON	INTRON	AP2B1	ENSG00000006125.18	ENST00000589774.5:ENST00000616784.4:ENST00000621914.4:ENST00000620039.4:ENST00000616681.4:ENST00000621668.4:ENST00000610402.5:ENST00000612035.4:ENST00000591610.5:ENST00000590538.5:ENST00000614600.4:ENST00000590432.5:ENST00000612116.5:ENST00000618940.4:ENST00000588093.1:ENST00000592167.5:ENST00000593014.3:ENST00000628168.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	62	2	3.2479	3.829795	4.41169	0.0199606	2.54231e-4	0.109608	0.0142045
chr1	108767572	108767672	178460	0	+	0.57	(0.515,0.57]	chr1	19407	71	INTRON	INTRON	STXBP3	ENSG00000116266.11	ENST00000370008.4:ENST00000486601.5:ENST00000485167.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	58	2	2.00468	3.8297100000000004	5.65474	0.0166344	9.00945e-5	0.110511	0.00844245
chr22	23691328	23691427	7563010	0	-	0.565657	(0.515,0.57]	chr22	773676	12	EXON_LNCRNA	EXON_LNCRNA:INTRON	GUSBP11	ENSG00000228315.12	ENST00000422506.5:ENST00000445682.2:ENST00000452737.5:ENST00000451837.5:ENST00000455485.5:ENST00000421064.5:ENST00000651432.1	lncRNA	lncRNA	lncRNA	lncRNA	3	58	2	2.00468	3.8297100000000004	5.65474	0.0166344	9.00945e-5	0.110511	0.00844245
chr3	152327119	152327218	1535570	0	+	0.232323	[0,0.28]	chr3	159996	248	INTRON	INTRON	MBNL1	ENSG00000152601.18	ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000495875.6:ENST00000324210.10:ENST00000493459.5:ENST00000459747.1:ENST00000460591.5:ENST00000545754.5:ENST00000357472.7:ENST00000324196.9:ENST00000498502.5:ENST00000463374.5:ENST00000485910.5:ENST00000465907.6:ENST00000492948.5:ENST00000485509.5:ENST00000464596.5	protein_coding	protein_coding	protein_coding	protein_coding	5	227	2	3.20882	3.8295500000000002	4.45028	5.27211e-5	4.97589e-5	0.00634297	0.00578198
chr6	15263254	15263354	2823118	0	+	0.47	(0.44,0.476]	chr6	265190	139	INTRON	INTRON	JARID2	ENSG00000008083.14	ENST00000341776.7:ENST00000397311.4	protein_coding	protein_coding	protein_coding	protein_coding	3	63	2	2.30673	3.8295	5.35227	0.0055175	8.47974e-4	0.0672816	0.0267232
chr4	78802380	78802479	1981645	0	+	0.323232	(0.32,0.35]	chr4	198463	253	INTRON	INTRON	BMP2K	ENSG00000138756.19	ENST00000389010.7:ENST00000502613.3:ENST00000502871.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	63	2	2.22429	3.8294449999999998	5.4346	0.0226421	4.09682e-4	0.117557	0.0181306
chr1	174957719	174957790	265136	0	+	0.309859	(0.28,0.32]	chr1	30922	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RABGAP1L	ENSG00000152061.24	ENST00000251507.8:ENST00000681986.1:ENST00000325589.9:ENST00000469553.6:ENST00000367687.5:ENST00000347255.6:ENST00000489615.5:ENST00000478442.5:ENST00000465412.5:ENST00000486220.5:ENST00000392064.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	49	2	2.51488	3.829145	5.14341	0.0380957	0.00185891	0.141678	0.039946
chr6	156877637	156877737	3008162	0	+	0.42	(0.408,0.44]	chr6	281111	56	INTRON	INTRON	ARID1B	ENSG00000049618.24	ENST00000346085.10:ENST00000636930.2:ENST00000647938.1:ENST00000350026.10:ENST00000674298.1:ENST00000674190.1:ENST00000636748.1:ENST00000414678.7:ENST00000638000.1:ENST00000636205.1:ENST00000637532.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	55	2	2.00768	3.82909	5.6505	0.035843	2.70553e-4	0.152216	0.0150813
chr14	67944124	67944224	5766617	0	+	0.29	(0.28,0.32]	chr14	547062	349	INTRON	INTRON	RAD51B	ENSG00000182185.19	ENST00000487861.5:ENST00000471583.6:ENST00000479335.5:ENST00000487270.5:ENST00000488612.5:ENST00000553595.5:ENST00000497460.5:ENST00000492236.5:ENST00000554244.5:ENST00000478014.5:ENST00000469165.6:ENST00000460526.5:ENST00000468382.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	49	2	2.57195	3.829085	5.08622	0.0331711	0.00227525	0.133994	0.0437013
chr2	58234489	58234588	1126694	0	-	0.282828	(0.28,0.32]	chr2	120969	20	INTRON	INTRON	FANCL	ENSG00000115392.13	ENST00000696400.1:ENST00000403295.8:ENST00000696492.1:ENST00000427708.7:ENST00000696314.1:ENST00000696315.1:ENST00000696454.1:ENST00000696508.1:ENST00000696548.1:ENST00000696542.1:ENST00000696319.1:ENST00000403676.6:ENST00000696433.1:ENST00000696434.1:ENST00000696499.1:ENST00000696564.1:ENST00000402135.8:ENST00000696546.1:ENST00000233741.9:ENST00000696316.1:ENST00000696378.1:ENST00000696435.1:ENST00000696493.1:ENST00000696543.1:ENST00000696544.1:ENST00000696545.1:ENST00000696565.1:ENST00000696620.1:ENST00000696621.1:ENST00000696635.1:ENST00000696364.1:ENST00000696634.1:ENST00000696317.1:ENST00000696622.1:ENST00000696467.1:ENST00000696547.1:ENST00000449070.6:ENST00000696305.1:ENST00000417361.2:ENST00000696338.1:ENST00000696361.1:ENST00000696318.1:ENST00000696371.1:ENST00000696409.1:ENST00000696410.1:ENST00000696455.1:ENST00000696468.1:ENST00000696527.1:ENST00000696567.1:ENST00000696324.1:ENST00000696566.1:ENST00000696623.1:ENST00000446381.6:ENST00000696469.1:ENST00000696624.1:ENST00000696411.1:ENST00000470506.2:ENST00000696358.1:ENST00000696373.1:ENST00000696394.1:ENST00000696320.1:ENST00000696395.1:ENST00000696341.1:ENST00000696340.1:ENST00000696374.1:ENST00000696342.1:ENST00000696325.1:ENST00000696399.1:ENST00000696398.1:ENST00000696306.1:ENST00000696344.1:ENST00000696362.1:ENST00000696528.1:ENST00000696326.1:ENST00000696625.1:ENST00000696510.1:ENST00000696438.1:ENST00000696496.1:ENST00000696509.1:ENST00000696569.1:ENST00000696457.1:ENST00000696458.1:ENST00000696473.1:ENST00000696495.1:ENST00000696415.1:ENST00000696472.1:ENST00000696459.1:ENST00000696416.1:ENST00000696530.1:ENST00000696460.1:ENST00000696570.1:ENST00000696531.1:ENST00000696307.1:ENST00000696345.1:ENST00000696377.1:ENST00000696417.1:ENST00000696594.1:ENST00000696595.1:ENST00000696379.1:ENST00000696346.1:ENST00000696347.1:ENST00000696461.1:ENST00000696596.1:ENST00000696549.1:ENST00000696597.1:ENST00000696550.1:ENST00000696598.1:ENST00000696321.1:ENST00000696476.1:ENST00000696477.1:ENST00000696511.1:ENST00000481670.3:ENST00000696403.1:ENST00000696551.1:ENST00000696308.1:ENST00000696418.1:ENST00000696404.1:ENST00000696478.1:ENST00000696419.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	49	2	2.57195	3.829085	5.08622	0.0331711	0.00227525	0.133994	0.0437013
chr8	90320760	90320860	3793301	0	+	0.31	(0.28,0.32]	chr8	351786	736	INTRON	INTRON	LINC00534	ENSG00000253394.7	ENST00000662145.1:ENST00000655523.1:ENST00000517400.6:ENST00000658299.1:ENST00000663329.1:ENST00000658342.1:ENST00000523283.6:ENST00000655219.1:ENST00000662692.1:ENST00000667296.1:ENST00000667565.1:ENST00000523406.2:ENST00000659030.1:ENST00000653734.1:ENST00000654785.1:ENST00000524361.5:ENST00000668745.1:ENST00000666641.2:ENST00000661519.1:ENST00000671657.1:ENST00000655123.1:ENST00000663098.1:ENST00000670903.1:ENST00000654946.1	lncRNA	lncRNA	lncRNA	lncRNA	1	49	2	2.57195	3.829085	5.08622	0.0331711	0.00227525	0.133994	0.0437013
chr8	92826641	92826741	3990372	0	-	0.31	(0.28,0.32]	chr8	365358	402	INTRON	INTRON	FLJ46284	ENSG00000248858.7	ENST00000504861.2	lncRNA	lncRNA	lncRNA	lncRNA	1	49	2	2.57195	3.829085	5.08622	0.0331711	0.00227525	0.133994	0.0437013
chr2	107723446	107723546	1205784	0	-	0.3	(0.28,0.32]	chr2	128532	58	INTRON	INTRON	LINC01885:ENSG00000286769	ENSG00000237880.2:ENSG00000286769.1	ENST00000654481.1:ENST00000669817.1	lncRNA	lncRNA	lncRNA	lncRNA	3	145	2	3.45645	3.8290800000000003	4.20171	1.23958e-4	9.99559e-5	0.00952291	0.00904854
chr15	66353355	66353455	6210150	0	-	0.59	(0.57,1]	chr15	592669	4	SS3_PROX	SS3_PROX:INTRON	TIPIN	ENSG00000075131.10	ENST00000261881.9:ENST00000566524.5:ENST00000562124.5:ENST00000568216.5:ENST00000570251.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	138	2	3.39255	3.82889	4.26523	1.63688e-7	7.8586e-8	1.98188e-4	1.21354e-4
chr6	20429622	20429722	2827725	0	+	0.34	(0.32,0.35]	chr6	265575	254	INTRON	INTRON	E2F3	ENSG00000112242.16	ENST00000346618.8:ENST00000535432.2	protein_coding	protein_coding	protein_coding	protein_coding	3	135	2	3.33795	3.82878	4.31961	1.93e-4	4.16815e-5	0.012131	0.00547677
chr1	2234363	2234462	2226	0	+	0.575758	(0.57,1]	chr1	553	13	INTRON	INTRON	SKI	ENSG00000157933.10	ENST00000378536.5:ENST00000508416.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	27	2	2.78409	3.82871	4.87333	0.0116033	3.21412e-4	0.0889104	0.0159645
chr15	74871424	74871524	6222727	0	-	0.58	(0.57,1]	chr15	594229	164	INTRON	INTRON	SCAMP2	ENSG00000140497.16	ENST00000268099.13:ENST00000563663.5:ENST00000563829.5:ENST00000569904.5:ENST00000565345.5:ENST00000562363.5:ENST00000564529.1:ENST00000566557.5:ENST00000569124.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	27	2	2.78409	3.82871	4.87333	0.0116033	3.21412e-4	0.0889104	0.0159645
chr2	197499438	197499470	1307172	0	-	0.59375	(0.57,1]	chr2	136815	1	SS3_ADJ	SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HSPD1	ENSG00000144381.18	ENST00000388968.8:ENST00000426480.2:ENST00000345042.6:ENST00000452200.6:ENST00000679291.1:ENST00000677403.1:ENST00000678621.1:ENST00000678545.1:ENST00000676933.1:ENST00000678170.1:ENST00000476746.6:ENST00000678969.1:ENST00000428204.6:ENST00000418022.2:ENST00000439605.2:ENST00000440114.2:ENST00000461097.2:ENST00000677792.1:ENST00000678761.1:ENST00000677913.1:ENST00000430176.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	27	2	2.78409	3.82871	4.87333	0.0116033	3.21412e-4	0.0889104	0.0159645
chr16	1854600	1854700	6430176	0	-	0.4	(0.378,0.408]	chr16	618371	4	SS3_PROX	SS3_PROX:INTRON	MEIOB	ENSG00000162039.17	ENST00000325962.9:ENST00000470044.5:ENST00000397344.7:ENST00000496541.6	protein_coding	protein_coding	protein_coding	protein_coding	6	98	2	1.59634	3.8286300000000004	6.06092	0.0244222	9.1834e-6	0.12011	0.00217645
chr1	212888594	212888694	310151	0	+	0.31	(0.28,0.32]	chr1	35824	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	FLVCR1	ENSG00000162769.13	ENST00000366971.9:ENST00000419102.1:ENST00000483790.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	81	2	1.68409	3.8286200000000004	5.97315	0.0548665	5.56637e-5	0.165463	0.0061014
chr1	148602260	148602359	546376	0	-	0.363636	(0.35,0.378]	chr1	64217	32	INTRON	INTRON	NBPF14	ENSG00000270629.7	ENST00000606877.2	protein_coding	protein_coding	protein_coding	protein_coding	2	55	2	2.39583	3.8285400000000003	5.26125	0.0107976	0.00191117	0.0920575	0.03947
chr10	77856131	77856229	4654084	0	-	0.418367	(0.408,0.44]	chr10	428757	14	INTRON	INTRON	DLG5	ENSG00000151208.17	ENST00000372391.7:ENST00000475613.6:ENST00000468332.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	43	2	2.95296	3.82853	4.7041	0.00929354	0.00381677	0.0817766	0.0562562
chr3	37043223	37043321	1395664	0	+	0.418367	(0.408,0.44]	chr3	146271	5	INTRON	INTRON	MLH1	ENSG00000076242.16	ENST00000536378.5:ENST00000673899.1:ENST00000674111.1:ENST00000673972.1:ENST00000231790.8:ENST00000673715.1:ENST00000432299.6:ENST00000673897.1:ENST00000673947.1:ENST00000456676.6:ENST00000673673.1:ENST00000674019.1:ENST00000458205.6:ENST00000413212.2:ENST00000447829.6:ENST00000673990.1:ENST00000455445.6:ENST00000435176.5:ENST00000539477.6:ENST00000441265.6:ENST00000673889.1:ENST00000616768.5:ENST00000450420.5:ENST00000413740.1:ENST00000674125.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	43	2	2.95296	3.82853	4.7041	0.00929354	0.00381677	0.0817766	0.0562562
chr1	229327858	229327958	652462	0	-	0.45	(0.44,0.476]	chr1	77247	3	SS3_PROX	SS3_PROX:INTRON	CCSAP	ENSG00000154429.11	ENST00000366687.5:ENST00000284617.7:ENST00000366686.1:ENST00000483092.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	53	2	2.21079	3.828495	5.4462	0.0194581	5.83686e-4	0.119831	0.0223753
chr10	42800766	42800863	4428214	0	+	0.525773	(0.515,0.57]	chr10	408127	18	INTRON	INTRON	BMS1	ENSG00000165733.8	ENST00000374518.6	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	2.74772	3.82842	4.90912	0.0142192	0.0021669	0.103638	0.0417866
chr16	2132674	2132774	6431322	0	-	0.52	(0.515,0.57]	chr16	618727	129	INTRON	INTRON	PKD1	ENSG00000008710.20	ENST00000262304.9:ENST00000423118.5	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	2.74772	3.82842	4.90912	0.0142192	0.0021669	0.103638	0.0417866
chr16	28723821	28723897	6334034	0	+	0.592105	(0.57,1]	chr16	606439	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	EIF3C	ENSG00000184110.15	ENST00000566501.5:ENST00000395587.5:ENST00000331666.11:ENST00000564243.5:ENST00000566866.5:ENST00000565932.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	27	2	3.09313	3.8283899999999997	4.56365	0.00369015	0.00129848	0.0535094	0.0333764
chr12	121797130	121797227	5439441	0	-	0.618557	(0.57,1]	chr12	520128	5	INTRON	INTRON	RHOF:LINC01089	ENSG00000139725.8:ENSG00000212694.8	ENST00000546227.5:ENST00000541657.5:ENST00000545544.1:ENST00000429892.5:ENST00000542933.5:ENST00000537157.5:ENST00000428029.6:ENST00000541694.5:ENST00000543167.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA:processed_transcript	3	41	2	2.52633	3.82827	5.13021	0.0018535	1.21664e-4	0.039946	0.00992813
chr17	35831445	35831543	6601316	0	+	0.295918	(0.28,0.32]	chr17	642440	1	EXON_MRNA	EXON_MRNA:INTRON	TAF15	ENSG00000270647.7	ENST00000605844.6:ENST00000603777.6:ENST00000604694.2:ENST00000689923.1:ENST00000603393.6:ENST00000685897.1:ENST00000603427.6:ENST00000604879.6:ENST00000604841.5:ENST00000603067.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	18	689	2	3.40949	3.828095	4.2467	2.24057e-7	1.00934e-7	2.44573e-4	1.38448e-4
chr18	5243367	5243466	6867740	0	+	0.292929	(0.28,0.32]	chr18	680439	57	EXON_LNCRNA	EXON_LNCRNA:SS3_PROX:INTRON	LINC00667	ENSG00000263753.9	ENST00000665272.1:ENST00000670111.1:ENST00000657250.1:ENST00000582008.6:ENST00000669574.2:ENST00000580082.3:ENST00000662359.1:ENST00000654155.1:ENST00000580684.6:ENST00000660030.2:ENST00000691055.1:ENST00000663393.1:ENST00000666950.1:ENST00000656810.1:ENST00000662932.1:ENST00000658607.1:ENST00000662415.1:ENST00000664934.1:ENST00000654021.1:ENST00000657129.1:ENST00000582363.1:ENST00000660561.1:ENST00000665541.1:ENST00000668807.1:ENST00000668495.1:ENST00000662652.1:ENST00000657955.1:ENST00000665442.1:ENST00000671289.1:ENST00000670993.1:ENST00000661357.1:ENST00000669192.1:ENST00000577439.2:ENST00000658226.1:ENST00000653571.1:ENST00000661829.1:ENST00000671312.1	lncRNA	lncRNA	lncRNA	lncRNA	2	68	2	2.40458	3.827995	5.25141	0.0141047	0.00125199	0.0959618	0.0328543
chrX	151407308	151407406	7735213	0	+	0.295918	(0.28,0.32]	chrX	791463	24	UTR3	UTR3:EXON_MRNA	VMA21	ENSG00000160131.14	ENST00000330374.7	protein_coding	protein_coding	protein_coding	protein_coding	2	61	2	2.55521	3.8279500000000004	5.10069	0.0067419	0.00610574	0.0739405	0.0676501
chr1	19340697	19340796	387446	0	-	0.353535	(0.35,0.378]	chr1	46339	12	UTR3	UTR3:EXON_MRNA:INTRON	CAPZB	ENSG00000077549.19	ENST00000264202.8:ENST00000264203.7:ENST00000375142.5:ENST00000482808.2:ENST00000674449.1:ENST00000674299.1:ENST00000674390.1:ENST00000375144.6:ENST00000674432.1:ENST00000433834.5:ENST00000674228.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	61	2	1.93432	3.827915	5.72151	0.0481438	7.69755e-5	0.153019	0.00735438
chr5	115523507	115523607	2707021	0	-	0.3	(0.28,0.32]	chr5	254753	27	UTR3	UTR3:EXON_MRNA	FEM1C	ENSG00000145780.8	ENST00000274457.5	protein_coding	protein_coding	protein_coding	protein_coding	6	103	2	1.87915	3.827805	5.77646	0.00813561	6.44045e-4	0.0810802	0.0231685
chr6	8427044	8427142	3055030	0	-	0.377551	(0.35,0.378]	chr6	284198	41	INTRON	INTRON	SLC35B3	ENSG00000124786.12	ENST00000644923.2:ENST00000649788.1:ENST00000648987.1:ENST00000379660.4:ENST00000648867.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	41	2	2.86451	3.82765	4.79079	0.0109111	0.00846427	0.0923273	0.0776969
chr6	13701775	13701874	3059126	0	-	0.353535	(0.35,0.378]	chr6	284548	45	INTRON	INTRON	RANBP9	ENSG00000010017.13	ENST00000011619.6	protein_coding	protein_coding	protein_coding	protein_coding	1	41	2	2.86451	3.82765	4.79079	0.0109111	0.00846427	0.0923273	0.0776969
chr9	100051516	100051616	4308169	0	-	0.36	(0.35,0.378]	chr9	395794	248	INTRON	INTRON	ERP44	ENSG00000023318.9	ENST00000262455.7:ENST00000685319.1:ENST00000691188.1:ENST00000687025.1:ENST00000687093.1:ENST00000690739.1:ENST00000687017.1:ENST00000690317.1:ENST00000691823.1:ENST00000686275.1:ENST00000689406.1:ENST00000684842.1:ENST00000688230.1:ENST00000685432.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	41	2	2.79643	3.827565	4.8587	0.013543	0.00695662	0.101363	0.0718189
chr10	5684730	5684826	4384339	0	+	0.520833	(0.515,0.57]	chr10	404452	1	UTR5	UTR5:EXON_MRNA	TASOR2	ENSG00000108021.21	ENST00000695832.1	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	2.52504	3.8273900000000003	5.12974	0.029342	4.54392e-4	0.128055	0.0192381
chr9	130787453	130787553	4214599	0	+	0.58	(0.57,1]	chr9	386427	726	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000393293.4	protein_coding	protein_coding	protein_coding	protein_coding	2	35	2	2.38391	3.82729	5.27067	0.0104374	5.68536e-5	0.0902296	0.00655354
chr1	6596057	6596156	368181	0	-	0.50505	(0.476,0.515]	chr1	43253	1	INTRON	INTRON	KLHL21	ENSG00000162413.17	ENST00000377663.3:ENST00000377658.8:ENST00000467612.5:ENST00000496707.5:ENST00000463043.1	protein_coding	protein_coding	protein_coding	protein_coding	2	58	2	2.66112	3.8272700000000004	4.99342	0.0044598	0.00139274	0.0592169	0.0341261
chr2	58184856	58184953	1126173	0	-	0.402062	(0.378,0.408]	chr2	120903	10	INTRON	INTRON	FANCL	ENSG00000115392.13	ENST00000696400.1:ENST00000403295.8:ENST00000696492.1:ENST00000427708.7:ENST00000696314.1:ENST00000696315.1:ENST00000696454.1:ENST00000696508.1:ENST00000696548.1:ENST00000696542.1:ENST00000696432.1:ENST00000696319.1:ENST00000403676.6:ENST00000696433.1:ENST00000696434.1:ENST00000696499.1:ENST00000696564.1:ENST00000402135.8:ENST00000696546.1:ENST00000233741.9:ENST00000696316.1:ENST00000696378.1:ENST00000696435.1:ENST00000696493.1:ENST00000696543.1:ENST00000696544.1:ENST00000696545.1:ENST00000696565.1:ENST00000696620.1:ENST00000696621.1:ENST00000696635.1:ENST00000696364.1:ENST00000696634.1:ENST00000696619.1:ENST00000696317.1:ENST00000696622.1:ENST00000696467.1:ENST00000696547.1:ENST00000449070.6:ENST00000696305.1:ENST00000417361.2:ENST00000696338.1:ENST00000696361.1:ENST00000696318.1:ENST00000696371.1:ENST00000696409.1:ENST00000696410.1:ENST00000696455.1:ENST00000696468.1:ENST00000696527.1:ENST00000696567.1:ENST00000696324.1:ENST00000696566.1:ENST00000696623.1:ENST00000446381.6:ENST00000696469.1:ENST00000696624.1:ENST00000696411.1:ENST00000696475.1:ENST00000470506.2:ENST00000696358.1:ENST00000696373.1:ENST00000696394.1:ENST00000696320.1:ENST00000696339.1:ENST00000696395.1:ENST00000696341.1:ENST00000696340.1:ENST00000696374.1:ENST00000696396.1:ENST00000696342.1:ENST00000696325.1:ENST00000696399.1:ENST00000696398.1:ENST00000696306.1:ENST00000696397.1:ENST00000696360.1:ENST00000696344.1:ENST00000696343.1:ENST00000696637.1:ENST00000696362.1:ENST00000696528.1:ENST00000696497.1:ENST00000696326.1:ENST00000696638.1:ENST00000696625.1:ENST00000696510.1:ENST00000696438.1:ENST00000696496.1:ENST00000696509.1:ENST00000696569.1:ENST00000696457.1:ENST00000696458.1:ENST00000696473.1:ENST00000696495.1:ENST00000696415.1:ENST00000696472.1:ENST00000696494.1:ENST00000696363.1:ENST00000696414.1:ENST00000696529.1:ENST00000696471.1:ENST00000696459.1:ENST00000696498.1:ENST00000696532.1:ENST00000696416.1:ENST00000696530.1:ENST00000696460.1:ENST00000696570.1:ENST00000696531.1:ENST00000696307.1:ENST00000696401.1:ENST00000696345.1:ENST00000696377.1:ENST00000696417.1:ENST00000696594.1:ENST00000696595.1:ENST00000696379.1:ENST00000696346.1:ENST00000696380.1:ENST00000696347.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	40	2	2.71183	3.827165	4.9425	0.0170789	0.00452675	0.110899	0.0595107
chr6	68676522	68676622	2886731	0	+	0.35	(0.32,0.35]	chr6	273730	367	INTRON	INTRON	ADGRB3	ENSG00000135298.15	ENST00000370598.6:ENST00000684661.1:ENST00000546190.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	69	2	2.06478	3.8270049999999998	5.58923	0.0147778	8.12357e-4	0.106702	0.0263656
chr10	124767800	124767900	4712304	0	-	0.52	(0.515,0.57]	chr10	434810	18	INTRON	INTRON	EEF1AKMT2	ENSG00000203791.15	ENST00000652548.1:ENST00000466270.5:ENST00000368836.7:ENST00000464099.5:ENST00000498770.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	99	2	3.55467	3.82688	4.09909	4.72555e-5	3.43577e-5	0.00593159	0.0046762
chr17	44322179	44322267	6779374	0	-	0.534091	(0.515,0.57]	chr17	668461	4	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SLC25A39	ENSG00000013306.16	ENST00000225308.12:ENST00000591006.5:ENST00000377095.10:ENST00000590194.5:ENST00000586016.5:ENST00000537904.6:ENST00000588767.5:ENST00000588315.5:ENST00000585695.5:ENST00000588049.5:ENST00000585636.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	99	2	3.55467	3.82688	4.09909	4.72555e-5	3.43577e-5	0.00593159	0.0046762
chr3	171322651	171322751	1866071	0	-	0.38	(0.378,0.408]	chr3	186980	941	INTRON	INTRON	TNIK	ENSG00000154310.17	ENST00000436636.7:ENST00000341852.10:ENST00000284483.12:ENST00000475336.5:ENST00000357327.9:ENST00000460047.5:ENST00000488470.5:ENST00000470834.5	protein_coding	protein_coding	protein_coding	protein_coding	1	43	2	2.66785	3.82686	4.98587	0.0224639	0.00152268	0.11692	0.0360297
chr4	169676465	169676564	2080439	0	+	0.383838	(0.378,0.408]	chr4	205618	157	INTRON	INTRON	CLCN3	ENSG00000109572.15	ENST00000511092.5:ENST00000347613.8:ENST00000360642.7:ENST00000512813.5:ENST00000513761.6:ENST00000613795.4:ENST00000507875.5	protein_coding	protein_coding	protein_coding	protein_coding	1	43	2	2.66785	3.82686	4.98587	0.0224639	0.00152268	0.11692	0.0360297
chr10	21881781	21881881	4577456	0	-	0.37	(0.35,0.378]	chr10	421907	1	SS5_PROX	SS5_PROX:INTRON	DNAJC1	ENSG00000136770.11	ENST00000376980.8	protein_coding	protein_coding	protein_coding	protein_coding	2	55	2	2.49643	3.82683	5.15723	0.00752974	0.00272706	0.0773151	0.0467523
chr2	27221770	27221847	717174	0	+	0.311688	(0.28,0.32]	chr2	82994	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CAD	ENSG00000084774.14	ENST00000264705.9:ENST00000403525.5	protein_coding	protein_coding	protein_coding	protein_coding	1	49	2	2.62686	3.82676	5.02666	0.0289217	0.0027935	0.1274	0.0488769
chr7	134008909	134009005	3425754	0	+	0.302083	(0.28,0.32]	chr7	319453	7	INTRON	INTRON	EXOC4	ENSG00000131558.15	ENST00000253861.5	protein_coding	protein_coding	protein_coding	protein_coding	1	49	2	2.62686	3.82676	5.02666	0.0289217	0.0027935	0.1274	0.0488769
chr9	124404816	124404916	4346550	0	-	0.32	(0.28,0.32]	chr9	399176	1	SS5_PROX	SS5_PROX:INTRON	PSMB7	ENSG00000136930.13	ENST00000259457.8:ENST00000498485.5:ENST00000441097.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	49	2	2.62686	3.82676	5.02666	0.0289217	0.0027935	0.1274	0.0488769
chr2	111452138	111452238	1211373	0	-	0.34	(0.32,0.35]	chr2	128909	44	INTRON	INTRON	MIR4435-2HG	ENSG00000172965.17	ENST00000645030.2:ENST00000642191.1:ENST00000673798.1:ENST00000645051.2:ENST00000673649.1:ENST00000669658.1:ENST00000669917.1:ENST00000661559.1:ENST00000653687.1:ENST00000667670.1:ENST00000609220.2:ENST00000656760.1:ENST00000609902.6:ENST00000666683.1:ENST00000674070.1:ENST00000662335.1:ENST00000664422.1:ENST00000673775.1:ENST00000674092.1:ENST00000673958.1:ENST00000658936.1:ENST00000662635.1:ENST00000666204.1:ENST00000659458.1:ENST00000664443.1:ENST00000670295.1:ENST00000661655.1:ENST00000666390.1:ENST00000659079.1:ENST00000660442.1:ENST00000664009.1:ENST00000439362.6:ENST00000654473.1:ENST00000664999.1:ENST00000673728.1:ENST00000659791.1:ENST00000666144.1:ENST00000659933.1:ENST00000670715.1:ENST00000653568.1:ENST00000643013.1:ENST00000673866.1:ENST00000443467.6:ENST00000669875.1:ENST00000673653.1:ENST00000673988.1:ENST00000661945.1:ENST00000669515.1:ENST00000431385.6:ENST00000656416.1:ENST00000674037.1:ENST00000432818.5:ENST00000674013.1:ENST00000444301.5:ENST00000673964.1:ENST00000673845.1:ENST00000673756.1:ENST00000673960.1:ENST00000673804.1:ENST00000673632.1:ENST00000453478.2:ENST00000673937.1:ENST00000673654.1:ENST00000409569.2:ENST00000674087.1:ENST00000419736.5:ENST00000673840.1:ENST00000674045.1:ENST00000673821.1:ENST00000643766.1:ENST00000308604.5:ENST00000674026.1:ENST00000604981.5:ENST00000673894.1:ENST00000442293.5:ENST00000441075.1	lncRNA	lncRNA	lncRNA	lncRNA	4	87	2	1.70947	3.8266600000000004	5.94385	0.0328375	3.75519e-5	0.133816	0.00490694
chr4	158669416	158669514	2280529	0	-	0.346939	(0.32,0.35]	chr4	221474	29	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	C4orf46	ENSG00000205208.5	ENST00000379205.5:ENST00000508457.1:ENST00000508836.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	65	2	1.77704	3.8266600000000004	5.87628	0.0719969	5.28936e-5	0.187322	0.00592337
chr1	171506269	171506369	253422	0	+	0.37	(0.35,0.378]	chr1	30096	202	INTRON	INTRON	PRRC2C	ENSG00000117523.18	ENST00000647382.2:ENST00000367742.7:ENST00000476522.5:ENST00000338920.8:ENST00000467601.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	45	2	3.45621	3.8266549999999997	4.1971	0.0367539	0.0011842	0.138959	0.031662
chr6	82240486	82240575	3143710	0	-	0.325843	(0.32,0.35]	chr6	293148	1	UTR5	UTR5:EXON_MRNA	IBTK	ENSG00000005700.15	ENST00000505222.5:ENST00000306270.12:ENST00000610980.4:ENST00000503400.5:ENST00000503631.5:ENST00000510291.5:ENST00000369751.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	63	2	2.2664	3.82662	5.38684	0.0199969	5.01164e-4	0.109608	0.020217099999999998
chr14	99994121	99994221	5813254	0	+	0.3	(0.28,0.32]	chr14	551194	217	INTRON	INTRON	EVL	ENSG00000196405.13	ENST00000402714.6	protein_coding	protein_coding	protein_coding	protein_coding	1	45	2	2.91832	3.82653	4.73474	0.0162835	0.0102484	0.101453	0.089002
chr5	43457096	43457195	2614569	0	-	0.292929	(0.28,0.32]	chr5	248552	21	INTRON	INTRON	TMEM267	ENSG00000151881.15	ENST00000397080.8:ENST00000500337.6:ENST00000512085.5:ENST00000511525.1:ENST00000510130.1:ENST00000506860.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	45	2	2.91832	3.82653	4.73474	0.0162835	0.0102484	0.101453	0.089002
chr1	52405939	52406039	103712	0	+	0.4	(0.378,0.408]	chr1	13586	1	SS5_PROX	SS5_PROX:INTRON	PRPF38A	ENSG00000134748.13	ENST00000257181.10:ENST00000487160.1:ENST00000474048.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	192	2	3.41517	3.82634	4.23751	3.59461e-5	5.43906e-7	0.00508574	3.96157e-4
chr9	128126846	128126928	4357500	0	-	0.439024	(0.408,0.44]	chr9	400214	1	EXON_MRNA	EXON_MRNA:INTRON	PTGES2	ENSG00000148334.16	ENST00000338961.11:ENST00000277462.9:ENST00000617202.4:ENST00000678916.1:ENST00000678174.1:ENST00000679345.1:ENST00000677980.1:ENST00000677651.1:ENST00000676562.1:ENST00000476655.6:ENST00000493205.6:ENST00000497109.6:ENST00000496594.5:ENST00000483625.6:ENST00000487063.5:ENST00000474124.6:ENST00000449878.1:ENST00000476748.5:ENST00000485510.5:ENST00000485237.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	57	2	1.85305	3.82634	5.79963	0.0543543	1.39468e-4	0.182243	0.0107072
chr7	2183172	2183272	3466434	0	-	0.37	(0.35,0.378]	chr7	324058	79	INTRON	INTRON	MAD1L1	ENSG00000002822.16	ENST00000406869.5:ENST00000399654.6:ENST00000402746.5:ENST00000265854.12:ENST00000464742.5:ENST00000459731.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	60	2	2.23651	3.82633	5.41615	0.020879	3.21724e-4	0.111766	0.0159645
chr10	63497753	63497853	4635711	0	-	0.43	(0.408,0.44]	chr10	426242	319	INTRON	INTRON	JMJD1C	ENSG00000171988.20	ENST00000633035.1	protein_coding	processed_transcript	protein_coding	processed_transcript	1	42	2	2.6542	3.8262850000000004	4.99837	0.0227514	0.00131369	0.117618	0.0333932
chr7	30600149	30600249	3301484	0	+	0.43	(0.408,0.44]	chr7	306530	1	SS5_PROX	SS5_PROX:INTRON	GARS1	ENSG00000106105.15	ENST00000675051.1:ENST00000470392.2:ENST00000674643.1:ENST00000675529.1:ENST00000674807.1:ENST00000675810.1:ENST00000676088.1:ENST00000674815.1:ENST00000676403.1:ENST00000485784.2:ENST00000676210.1:ENST00000478124.6:ENST00000454308.6:ENST00000389266.8:ENST00000675693.1:ENST00000676259.1:ENST00000675651.1:ENST00000674616.1:ENST00000674737.1:ENST00000675859.1:ENST00000676140.1:ENST00000674969.1:ENST00000676164.1:ENST00000675886.1:ENST00000444666.6:ENST00000675587.1:ENST00000674851.1:ENST00000675863.1:ENST00000675025.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	42	2	2.6542	3.8262850000000004	4.99837	0.0227514	0.00131369	0.117618	0.0333932
chr9	61870903	61871003	4128679	0	+	0.41	(0.408,0.44]	chr9	376260	137	INTRON	INTRON	FAM27C	ENSG00000231527.7	ENST00000651393.1:ENST00000653087.1:ENST00000660875.1:ENST00000670686.1:ENST00000656580.1:ENST00000653988.1:ENST00000443347.6:ENST00000668789.1:ENST00000669872.1:ENST00000657353.1:ENST00000669747.1:ENST00000671566.1:ENST00000662964.1:ENST00000650759.1:ENST00000656926.1:ENST00000655025.1:ENST00000653460.1:ENST00000655049.1:ENST00000659299.1:ENST00000651201.1:ENST00000651799.1	lncRNA	lncRNA	lncRNA	lncRNA	1	42	2	2.6542	3.8262850000000004	4.99837	0.0227514	0.00131369	0.117618	0.0333932
chr11	66618852	66618948	4810820	0	+	0.458333	(0.44,0.476]	chr11	447851	3	SS5_PROX	SS5_PROX:INTRON	RBM14-RBM4:RBM14	ENSG00000248643.5:ENSG00000239306.5	ENST00000412278.2:ENST00000393979.3:ENST00000511114.1:ENST00000310137.5:ENST00000409372.1:ENST00000421355.1:ENST00000443702.1:ENST00000500635.2:ENST00000409738.4:ENST00000461478.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	222	2	3.82239	3.8261849999999997	3.82998	2.47894e-6	9.61734e-7	0.0011076	5.54959e-4
chr15	57118633	57118733	6034119	0	+	0.32	(0.28,0.32]	chr15	574696	2	SS5_PROX	SS5_PROX:INTRON	TCF12	ENSG00000140262.18	ENST00000438423.6:ENST00000267811.9:ENST00000333725.10:ENST00000560190.5:ENST00000559609.5:ENST00000557843.5:ENST00000557947.5:ENST00000561152.1:ENST00000561346.5:ENST00000559216.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	45	2	2.60656	3.826175	5.04579	0.0256827	0.00714672	0.133676	0.0723634
chr16	71739441	71739541	6513745	0	-	0.29	(0.28,0.32]	chr16	631074	1	SS3_PROX	SS3_PROX:INTRON	AP1G1	ENSG00000166747.13	ENST00000299980.9:ENST00000569748.5:ENST00000564155.5:ENST00000393512.7:ENST00000565009.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	45	2	2.60656	3.826175	5.04579	0.0256827	0.00714672	0.133676	0.0723634
chrX	153960714	153960814	7912086	0	-	0.4	(0.378,0.408]	chrX	805486	3	SS3_PROX	SS3_PROX:INTRON	HCFC1	ENSG00000172534.14	ENST00000310441.12:ENST00000369984.4:ENST00000461098.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	120	2	3.28937	3.826175	4.36298	3.2389e-4	9.6198e-6	0.0165891	0.00224473
chr7	107526236	107526336	3612648	0	-	0.39	(0.378,0.408]	chr7	336698	454	INTRON	INTRON	COG5	ENSG00000164597.15	ENST00000297135.9:ENST00000347053.8:ENST00000393603.7:ENST00000475638.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	64	2	2.22859	3.826085	5.42358	0.00763308	8.39231e-4	0.0777238	0.0266487
chr7	128304935	128305034	3634852	0	-	0.545455	(0.515,0.57]	chr7	337817	74	UTR3	UTR3:EXON_MRNA	RBM28	ENSG00000106344.8	ENST00000223073.6	protein_coding	protein_coding	protein_coding	protein_coding	7	205	2	3.40849	3.8260449999999997	4.2436	1.83121e-6	2.87471e-7	9.15427e-4	2.66854e-4
chr16	69138177	69138277	6377309	0	+	0.35	(0.32,0.35]	chr16	612909	2	SS5_PROX	SS5_PROX:INTRON	UTP4	ENSG00000141076.18	ENST00000563299.5:ENST00000562237.5:ENST00000567460.5:ENST00000566227.5:ENST00000314423.12:ENST00000352319.8:ENST00000563094.5:ENST00000567235.6:ENST00000568448.1:ENST00000567015.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	100	2	3.82296	3.8259	3.82884	4.19685e-4	2.45656e-4	0.018968	0.0138769
chr8	111039125	111039221	4027593	0	-	0.416667	(0.408,0.44]	chr8	367869	19	INTRON	INTRON	LINC01608	ENSG00000253877.6	ENST00000669893.1	lncRNA	lncRNA	lncRNA	lncRNA	2	53	2	2.21238	3.8258900000000002	5.4394	0.0193525	6.50925e-4	0.119831	0.0232863
chr1	23144274	23144374	398772	0	-	0.45	(0.44,0.476]	chr1	47812	107	INTRON	INTRON	LUZP1	ENSG00000169641.14	ENST00000302291.8:ENST00000314174.5:ENST00000471849.5	protein_coding	protein_coding	protein_coding	protein_coding	1	39	2	2.89047	3.8255749999999997	4.76068	0.00955699	0.00653414	0.0863913	0.0699952
chr11	68345249	68345349	4816262	0	+	0.45	(0.44,0.476]	chr11	448753	321	INTRON	INTRON	LRP5	ENSG00000162337.12	ENST00000294304.12:ENST00000529993.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	39	2	2.89047	3.8255749999999997	4.76068	0.00955699	0.00653414	0.0863913	0.0699952
chr15	59115737	59115827	6040116	0	+	0.466667	(0.44,0.476]	chr15	575087	5	INTRON	INTRON	CCNB2	ENSG00000157456.8	ENST00000288207.7:ENST00000559622.5:ENST00000621385.1	protein_coding	protein_coding	protein_coding	protein_coding	1	39	2	2.89047	3.8255749999999997	4.76068	0.00955699	0.00653414	0.0863913	0.0699952
chr4	53406328	53406427	1959740	0	+	0.464646	(0.44,0.476]	chr4	196437	61	INTRON	INTRON	FIP1L1	ENSG00000145216.16	ENST00000337488.11:ENST00000358575.9:ENST00000507922.5:ENST00000306932.10:ENST00000505125.5:ENST00000513975.5:ENST00000514543.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	39	2	2.89047	3.8255749999999997	4.76068	0.00955699	0.00653414	0.0863913	0.0699952
chr4	150901110	150901208	2270615	0	-	0.459184	(0.44,0.476]	chr4	220865	5	INTRON	INTRON	LRBA	ENSG00000198589.14	ENST00000357115.9:ENST00000651943.2:ENST00000510413.5:ENST00000651035.1:ENST00000507224.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	39	2	2.89047	3.8255749999999997	4.76068	0.00955699	0.00653414	0.0863913	0.0699952
chrX	15691992	15692086	7624391	0	+	0.446809	(0.44,0.476]	chrX	780688	9	INTRON	INTRON	CA5BP1:CA5B	ENSG00000186312.10:ENSG00000169239.13	ENST00000380336.5:ENST00000380334.6:ENST00000380333.5:ENST00000380331.5:ENST00000435806.2:ENST00000498004.5	protein_coding	protein_coding	protein_coding:transcribed_unprocessed_pseudogene	protein_coding:processed_transcript:transcribed_unprocessed_pseudogene	1	39	2	2.89047	3.8255749999999997	4.76068	0.00955699	0.00653414	0.0863913	0.0699952
chr12	132089482	132089578	5250236	0	+	0.447917	(0.44,0.476]	chr12	499289	11	INTRON	INTRON	EP400P1	ENSG00000185684.16	ENST00000407361.8:ENST00000446190.5:ENST00000690966.1:ENST00000689047.1:ENST00000454179.7:ENST00000689533.1:ENST00000688036.1:ENST00000688136.1:ENST00000488030.5:ENST00000389560.6:ENST00000689403.1:ENST00000443539.6:ENST00000392352.5:ENST00000539205.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	1	39	2	2.81896	3.8254900000000003	4.83202	0.0120766	0.00525002	0.0962311	0.0633615
chr13	99085422	99085522	5646811	0	-	0.47	(0.44,0.476]	chr13	537857	695	INTRON	INTRON	DOCK9	ENSG00000088387.21	ENST00000652315.1:ENST00000427887.2:ENST00000479769.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	39	2	2.81896	3.8254900000000003	4.83202	0.0120766	0.00525002	0.0962311	0.0633615
chr9	37220921	37221021	4118666	0	+	0.37	(0.35,0.378]	chr9	375389	340	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000461038.5:ENST00000488607.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	66	2	2.20096	3.825075	5.44919	0.0087123	9.66659e-4	0.0844834	0.0282401
chr7	38746113	38746212	3521295	0	-	0.414141	(0.408,0.44]	chr7	328383	1	INTRON	INTRON	VPS41	ENSG00000006715.16	ENST00000310301.9:ENST00000395969.6	protein_coding	protein_coding	protein_coding	protein_coding	2	57	2	2.05947	3.82496	5.59045	0.0333232	9.6776e-5	0.134145	0.00826486
chr1	109225908	109226005	179713	0	+	0.309278	(0.28,0.32]	chr1	19618	15	INTRON	INTRON	SARS1	ENSG00000031698.13	ENST00000234677.7:ENST00000477544.5:ENST00000369923.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	68	2	3.06094	3.824845	4.58875	0.0230574	8.54457e-4	0.118056	0.0265194
chr5	98919852	98919951	2683983	0	-	0.434343	(0.408,0.44]	chr5	253957	144	INTRON	INTRON	CHD1	ENSG00000153922.11	ENST00000614616.5:ENST00000284049.7	protein_coding	protein_coding	protein_coding	protein_coding	1	42	2	2.58624	3.824835	5.06343	0.0273686	0.00101725	0.123904	0.0293497
chr6	157172282	157172381	3011137	0	+	0.383838	(0.378,0.408]	chr6	281201	18	INTRON	INTRON	ARID1B	ENSG00000049618.24	ENST00000346085.10:ENST00000636930.2:ENST00000647938.1:ENST00000350026.10:ENST00000414678.7:ENST00000319584.11:ENST00000635849.1:ENST00000637904.1:ENST00000637810.1:ENST00000637015.1:ENST00000637568.1:ENST00000635957.1:ENST00000400790.3:ENST00000637741.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	58	2	2.26009	3.824785	5.38948	0.0188651	2.85992e-4	0.108861	0.0150568
chr8	67172108	67172205	3777758	0	+	0.391753	(0.378,0.408]	chr8	350440	3	SS3_PROX	SS3_PROX:INTRON	CSPP1	ENSG00000104218.16	ENST00000676113.1:ENST00000675306.2:ENST00000262210.11:ENST00000678017.1:ENST00000675869.1:ENST00000678542.1:ENST00000677619.1:ENST00000676605.1:ENST00000676471.1:ENST00000677256.1:ENST00000676847.1:ENST00000677009.1:ENST00000676317.1:ENST00000677592.1:ENST00000676573.1:ENST00000678318.1:ENST00000677473.1:ENST00000674993.1:ENST00000679226.1:ENST00000676882.1:ENST00000675955.1:ENST00000677430.1:ENST00000678616.1:ENST00000679112.1:ENST00000678645.1:ENST00000677845.1:ENST00000676858.1:ENST00000678747.1:ENST00000519668.1:ENST00000677855.1:ENST00000677052.1:ENST00000679274.1:ENST00000678635.1:ENST00000676804.1:ENST00000679295.1:ENST00000677964.1:ENST00000676968.1:ENST00000678895.1:ENST00000678723.1:ENST00000677131.1:ENST00000521324.3:ENST00000675990.1:ENST00000521168.5:ENST00000677697.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	58	2	2.26009	3.824785	5.38948	0.0188651	2.85992e-4	0.108861	0.0150568
chr16	20719269	20719369	6317129	0	+	0.46	(0.44,0.476]	chr16	604566	372	INTRON	INTRON	ACSM3	ENSG00000005187.12	ENST00000568235.5:ENST00000501740.6:ENST00000561584.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	42	2	3.41176	3.824655	4.23755	0.0263357	0.00130987	0.122221	0.0333932
chr18	13022293	13022393	6876888	0	+	0.24	[0,0.28]	chr18	681391	27	INTRON	INTRON	CEP192	ENSG00000101639.19	ENST00000325971.12:ENST00000506447.5:ENST00000589596.5:ENST00000513432.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	200	2	2.9908	3.82465	4.6585	7.87324e-4	5.68659e-6	0.0258889	0.00165922
chr5	60964427	60964527	2359412	0	+	0.44	(0.408,0.44]	chr5	227644	186	INTRON	INTRON	NDUFAF2	ENSG00000164182.12	ENST00000678452.1:ENST00000677756.1:ENST00000296597.10:ENST00000511107.1:ENST00000677932.1:ENST00000502658.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	57	2	2.40661	3.8246400000000005	5.24267	0.011475	4.83767e-4	0.0888882	0.0199261
chr2	86967549	86967647	824678	0	+	0.336735	(0.32,0.35]	chr2	92143	40	INTRON	INTRON	RGPD1	ENSG00000187627.17	ENST00000409776.6:ENST00000398193.8:ENST00000641458.2	protein_coding	protein_coding	protein_coding	protein_coding	3	69	2	2.02133	3.82464	5.62795	0.017146	7.01392e-4	0.111072	0.024224
chr21	45279364	45279463	7469295	0	-	0.323232	(0.32,0.35]	chr21	761292	8	INTRON	INTRON	POFUT2	ENSG00000186866.17	ENST00000331343.11:ENST00000334538.13:ENST00000471540.5:ENST00000612472.4:ENST00000349485.10:ENST00000451615.1:ENST00000493524.5:ENST00000468360.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	45	2	3.28107	3.8243099999999997	4.36755	0.0300552	0.00262488	0.129138	0.0470772
chr8	39043412	39043512	3738762	0	+	0.33	(0.32,0.35]	chr8	347526	9	INTRON	INTRON	ADAM9	ENSG00000168615.13	ENST00000678474.1:ENST00000676765.1:ENST00000676936.1:ENST00000677908.1:ENST00000677004.1:ENST00000677165.1:ENST00000481058.2:ENST00000676643.1:ENST00000676669.1:ENST00000679268.1:ENST00000677582.1:ENST00000676617.1:ENST00000677137.1:ENST00000678540.1:ENST00000677359.1:ENST00000678730.1:ENST00000487273.7:ENST00000678253.1:ENST00000676489.1:ENST00000379917.7:ENST00000468065.5:ENST00000481873.7:ENST00000676919.1:ENST00000678863.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	45	2	3.28107	3.8243099999999997	4.36755	0.0300552	0.00262488	0.129138	0.0470772
chr10	73096165	73096265	4647840	0	-	0.62	(0.57,1]	chr10	427557	137	INTRON	INTRON	P4HA1	ENSG00000122884.13	ENST00000394890.7:ENST00000307116.6:ENST00000373008.6:ENST00000440381.5:ENST00000263556.3	protein_coding	protein_coding	protein_coding	protein_coding	3	63	2	3.35328	3.8242849999999997	4.29529	8.52328e-5	4.35224e-6	0.00825602	0.00140234
chr16	18916477	18916576	6458011	0	-	0.373737	(0.35,0.378]	chr16	622895	49	INTRON	INTRON	SMG1	ENSG00000157106.18	ENST00000446231.7:ENST00000532700.6:ENST00000569122.1	protein_coding	protein_coding	protein_coding	protein_coding	1	41	2	2.72498	3.8242649999999996	4.92355	0.0168499	0.00573514	0.11068	0.0657377
chr2	87704421	87704510	828432	0	+	0.370787	(0.35,0.378]	chr2	92510	2	EXON_LNCRNA	EXON_LNCRNA	ENSG00000284879	ENSG00000284879.1	ENST00000643276.1:ENST00000646855.1	lncRNA	lncRNA	lncRNA	lncRNA	1	41	2	2.72498	3.8242649999999996	4.92355	0.0168499	0.00573514	0.11068	0.0657377
chrX	154744965	154745065	7915259	0	-	0.37	(0.35,0.378]	chrX	806107	283	INTRON	INTRON	GAB3	ENSG00000160219.12	ENST00000496390.5:ENST00000424127.3:ENST00000369575.7:ENST00000369568.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	41	2	2.72498	3.8242649999999996	4.92355	0.0168499	0.00573514	0.11068	0.0657377
chr12	111595649	111595749	5413196	0	-	0.26	[0,0.28]	chr12	516941	309	INTRON	INTRON	ATXN2	ENSG00000204842.18	ENST00000642389.2:ENST00000608853.5:ENST00000672613.1:ENST00000673436.1:ENST00000643669.2:ENST00000616825.4:ENST00000389153.10:ENST00000550104.5:ENST00000483311.6:ENST00000672335.1:ENST00000673557.1:ENST00000673283.1:ENST00000673449.1:ENST00000535949.5:ENST00000542287.6:ENST00000644883.1:ENST00000647305.1:ENST00000671792.1:ENST00000392645.6:ENST00000672105.1:ENST00000549455.1:ENST00000548492.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	88	2	1.85833	3.8241250000000004	5.78992	0.0378973	2.85302e-4	0.141283	0.0150568
chr6	140217964	140218064	2968635	0	+	0.26	[0,0.28]	chr6	279015	689	INTRON	INTRON	ENSG00000288714	ENSG00000288714.1	ENST00000683950.1	lncRNA	lncRNA	lncRNA	lncRNA	1	49	2	2.43761	3.8240749999999997	5.21054	0.0423864	0.00758653	0.161744	0.0749063
chr16	31182097	31182197	6340572	0	+	0.51	(0.476,0.515]	chr16	608318	3	SS3_PROX	SS3_PROX:INTRON	FUS	ENSG00000089280.19	ENST00000566605.5:ENST00000254108.12:ENST00000380244.7:ENST00000487045.6:ENST00000487509.6:ENST00000568685.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	375	2	3.77269	3.82386	3.87503	1.49734e-6	3.10529e-8	7.32159e-4	6.37571e-5
chr6	169761156	169761256	3035975	0	+	0.39	(0.378,0.408]	chr6	282969	4	SS5_PROX	SS5_PROX:INTRON	ERMARD	ENSG00000130023.16	ENST00000366773.8:ENST00000366772.6:ENST00000392095.8:ENST00000418781.7:ENST00000588451.1	protein_coding	protein_coding	protein_coding	protein_coding	1	42	2	3.33026	3.823625	4.31699	0.0250408	0.00189824	0.12011	0.0402736
chr10	87921423	87921523	4483512	0	+	0.49	(0.476,0.515]	chr10	412570	270	INTRON	INTRON	PTEN	ENSG00000171862.12	ENST00000688308.1:ENST00000693560.1:ENST00000371953.8:ENST00000688158.1:ENST00000686459.1:ENST00000688922.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	39	2	2.87879	3.82353	4.76827	0.00999149	0.00600704	0.0879541	0.0674604
chr15	92931967	92932066	6104014	0	+	0.50505	(0.476,0.515]	chr15	581428	25	INTRON	INTRON	ENSG00000279765:CHD2	ENSG00000279765.3:ENSG00000173575.22	ENST00000630790.1:ENST00000626874.2:ENST00000394196.9:ENST00000635856.1:ENST00000420239.7:ENST00000628375.2:ENST00000625990.3:ENST00000626782.2:ENST00000629136.1:ENST00000637572.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	39	2	2.87879	3.82353	4.76827	0.00999149	0.00600704	0.0879541	0.0674604
chr18	9228569	9228668	6869859	0	+	0.30303	(0.28,0.32]	chr18	680611	62	INTRON	INTRON	ANKRD12	ENSG00000101745.17	ENST00000262126.9:ENST00000540578.6:ENST00000400020.7:ENST00000546007.6:ENST00000359158.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	47	2	3.22074	3.8235200000000003	4.4263	0.0330296	0.00362783	0.133816	0.055479
chr17	80395096	80395196	6684489	0	+	0.34	(0.32,0.35]	chr17	653304	17	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	RNF213	ENSG00000173821.20	ENST00000582970.6:ENST00000508628.6:ENST00000411702.7:ENST00000427003.7:ENST00000560083.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	59	2	2.7493	3.82349	4.89768	0.00793135	0.00296357	0.076155	0.0500135
chr15	34209472	34209567	6131391	0	-	0.494737	(0.476,0.515]	chr15	583952	11	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	KATNBL1	ENSG00000134152.11	ENST00000256544.8:ENST00000560247.5:ENST00000540594.5:ENST00000560671.5:ENST00000557877.5:ENST00000559462.1:ENST00000560108.5:ENST00000559515.1:ENST00000560915.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	39	2	2.80729	3.823455	4.83962	0.0126008	0.00480934	0.0980703	0.0602209
chr17	40232422	40232522	6609595	0	+	0.5	(0.476,0.515]	chr17	643734	115	INTRON	INTRON	WIPF2	ENSG00000171475.14	ENST00000323571.9:ENST00000583268.1:ENST00000494757.5:ENST00000582781.5:ENST00000585043.5:ENST00000394103.7:ENST00000583130.5:ENST00000584296.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	39	2	2.80729	3.823455	4.83962	0.0126008	0.00480934	0.0980703	0.0602209
chr20	35676087	35676186	7335871	0	-	0.50505	(0.476,0.515]	chr20	747330	10	EXON_MRNA	EXON_MRNA:INTRON	NFS1	ENSG00000244005.13	ENST00000374092.9:ENST00000374085.5:ENST00000480655.5:ENST00000397425.5:ENST00000440385.5:ENST00000541387.5:ENST00000489163.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	39	2	2.80729	3.823455	4.83962	0.0126008	0.00480934	0.0980703	0.0602209
chr9	125125637	125125737	4351801	0	-	0.48	(0.476,0.515]	chr9	399530	592	INTRON	INTRON	SCAI	ENSG00000173611.18	ENST00000336505.11:ENST00000373549.8:ENST00000477186.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	39	2	2.80729	3.823455	4.83962	0.0126008	0.00480934	0.0980703	0.0602209
chr3	100285404	100285503	1465817	0	+	0.252525	[0,0.28]	chr3	153613	12	INTRON	INTRON	TBC1D23	ENSG00000036054.13	ENST00000394144.9:ENST00000485687.5:ENST00000344949.9:ENST00000486274.5:ENST00000471098.1:ENST00000475134.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	79	2	2.13176	3.82332	5.51488	0.0135097	0.00314116	0.101363	0.0500389
chr3	138188830	138188930	1513967	0	+	0.32	(0.28,0.32]	chr3	158294	3	SS5_PROX	SS5_PROX:INTRON	ARMC8	ENSG00000114098.18	ENST00000538260.5:ENST00000481646.5:ENST00000469044.6:ENST00000491704.5:ENST00000461600.5:ENST00000466749.5:ENST00000358441.6:ENST00000489213.5:ENST00000461822.5:ENST00000485396.5:ENST00000471453.5:ENST00000470821.5:ENST00000471709.5:ENST00000463485.5:ENST00000468560.1	protein_coding	protein_coding	protein_coding	protein_coding	2	63	2	2.77917	3.82324	4.86731	0.0116253	0.00285651	0.0889104	0.0494641
chr5	43453657	43453727	2614532	0	-	0.357143	(0.35,0.378]	chr5	248543	1	CDS	CDS:EXON_MRNA:INTRON	TMEM267	ENSG00000151881.15	ENST00000397080.8:ENST00000500337.6:ENST00000512085.5:ENST00000511525.1:ENST00000510130.1:ENST00000506860.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	66	2	2.24196	3.8232049999999997	5.40445	0.00744693	0.00114224	0.0772645	0.0307966
chr21	33905091	33905186	7444933	0	-	0.389474	(0.378,0.408]	chr21	759711	7	INTRON	INTRON	ENSG00000249209:ATP5PO	ENSG00000249209.2:ENSG00000241837.7	ENST00000429238.2:ENST00000290299.7:ENST00000491703.5:ENST00000431254.5:ENST00000652380.1:ENST00000418933.1:ENST00000417181.5:ENST00000429064.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	44	2	2.95459	3.8231400000000004	4.69169	0.00957623	0.00432302	0.0820838	0.0599409
chrX	41336159	41336255	7645665	0	+	0.395833	(0.378,0.408]	chrX	782488	1	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	DDX3X	ENSG00000215301.11	ENST00000625837.2:ENST00000626301.2:ENST00000629785.2:ENST00000630255.2:ENST00000630370.2:ENST00000630858.2:ENST00000629496.3:ENST00000610559.5:ENST00000611546.2:ENST00000478993.5:ENST00000457138.7:ENST00000643821.1:ENST00000644876.2:ENST00000399959.7:ENST00000644074.1:ENST00000645338.1:ENST00000646196.1:ENST00000642793.1:ENST00000646940.1:ENST00000644307.1:ENST00000645561.1:ENST00000645080.1:ENST00000642597.1:ENST00000642722.1:ENST00000644109.1:ENST00000644958.1:ENST00000646122.1:ENST00000644513.1:ENST00000645589.1:ENST00000441189.4:ENST00000646822.1:ENST00000631641.2:ENST00000615742.4:ENST00000647219.1:ENST00000480592.6:ENST00000646223.1:ENST00000643963.1:ENST00000646319.1:ENST00000645783.1:ENST00000642624.1:ENST00000542215.5:ENST00000644073.1:ENST00000644677.1:ENST00000615313.5:ENST00000622373.1:ENST00000642322.1:ENST00000622198.5:ENST00000645120.1:ENST00000646107.1:ENST00000646627.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	74	2	1.76	3.82312	5.88624	0.023484	1.19481e-4	0.128531	0.00988798
chr16	66562081	66562179	6364866	0	+	0.428571	(0.408,0.44]	chr16	611234	34	INTRON	INTRON	CKLF	ENSG00000217555.13	ENST00000534692.1:ENST00000345436.8:ENST00000351137.8:ENST00000362093.4:ENST00000264001.9:ENST00000417030.2:ENST00000563092.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	39	2	2.89193	3.8229550000000003	4.75398	0.00950364	0.00703931	0.0863579	0.0718189
chr6	163503289	163503389	3032598	0	+	0.43	(0.408,0.44]	chr6	282586	240	INTRON	INTRON	QKI	ENSG00000112531.17	ENST00000361758.8:ENST00000453779.6:ENST00000275262.11:ENST00000392127.6:ENST00000361752.8:ENST00000361195.6:ENST00000424802.7:ENST00000545607.5:ENST00000544436.5:ENST00000537041.5:ENST00000545346.1:ENST00000544823.5:ENST00000537883.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	39	2	2.89193	3.8229550000000003	4.75398	0.00950364	0.00703931	0.0863579	0.0718189
chr7	128559423	128559523	3407638	0	+	0.44	(0.408,0.44]	chr7	318333	253	INTRON	INTRON	ENSG00000280828	ENSG00000280828.1	ENST00000479267.2	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	1	39	2	2.89193	3.8229550000000003	4.75398	0.00950364	0.00703931	0.0863579	0.0718189
chr22	38361475	38361560	7587462	0	-	0.411765	(0.408,0.44]	chr22	776659	5	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO	TPTEP2	ENSG00000244627.5	ENST00000428294.5:ENST00000407491.6:ENST00000443042.5:ENST00000457665.5:ENST00000381645.7:ENST00000443658.5:ENST00000381646.6	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	1	39	2	2.82042	3.8228600000000004	4.8253	0.0120121	0.0056738	0.0962115	0.0653997
chr7	75520912	75521012	3559079	0	-	0.44	(0.408,0.44]	chr7	331602	43	INTRON	INTRON	PMS2P3	ENSG00000127957.19	ENST00000693762.1:ENST00000394921.8:ENST00000430602.5:ENST00000418756.5:ENST00000437568.6:ENST00000533167.5:ENST00000691440.1:ENST00000422064.1:ENST00000438326.2	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript	1	39	2	2.82042	3.8228600000000004	4.8253	0.0120121	0.0056738	0.0962115	0.0653997
chr8	140931002	140931102	4079372	0	-	0.44	(0.408,0.44]	chr8	370568	32	INTRON	INTRON	PTK2	ENSG00000169398.20	ENST00000696786.1:ENST00000522684.5:ENST00000395218.3:ENST00000521059.5:ENST00000519993.5:ENST00000340930.7:ENST00000519419.5:ENST00000524357.5:ENST00000521791.5:ENST00000523067.5:ENST00000520828.5:ENST00000520475.5:ENST00000519881.5:ENST00000520892.5:ENST00000523803.5:ENST00000521907.5:ENST00000517453.5:ENST00000520045.5:ENST00000521395.5:ENST00000521332.5:ENST00000524040.5:ENST00000523679.1:ENST00000524257.5:ENST00000523797.1:ENST00000519635.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	39	2	2.82042	3.8228600000000004	4.8253	0.0120121	0.0056738	0.0962115	0.0653997
chr13	95131698	95131798	5638157	0	-	0.38	(0.378,0.408]	chr13	537056	153	INTRON	INTRON	ABCC4	ENSG00000125257.16	ENST00000645237.2:ENST00000643051.1:ENST00000643842.1:ENST00000646439.1:ENST00000644880.1:ENST00000643816.1:ENST00000536256.3:ENST00000643556.1:ENST00000629385.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	54	2	2.70298	3.82274	4.9425	0.00452675	0.00325723	0.0595107	0.0524329
chr10	12018572	12018672	4557538	0	-	0.45	(0.44,0.476]	chr10	420618	40	INTRON	INTRON	UPF2	ENSG00000151461.20	ENST00000357604.10:ENST00000356352.6:ENST00000397053.6	protein_coding	protein_coding	protein_coding	protein_coding	1	42	2	2.86231	3.82262	4.78293	0.012214	0.00292033	0.0910127	0.0494641
chr19	57257972	57258071	7103474	0	+	0.454545	(0.44,0.476]	chr19	712838	34	UTR3	UTR3:EXON_MRNA	ZNF805	ENSG00000204524.7	ENST00000414468.3	protein_coding	protein_coding	protein_coding	protein_coding	1	42	2	2.86231	3.82262	4.78293	0.012214	0.00292033	0.0910127	0.0494641
chr5	81989743	81989841	2402879	0	+	0.469388	(0.44,0.476]	chr5	232114	17	INTRON	INTRON	ATG10	ENSG00000152348.16	ENST00000282185.8:ENST00000355178.8:ENST00000458350.7:ENST00000513443.5:ENST00000504770.5:ENST00000513634.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	42	2	2.86231	3.82262	4.78293	0.012214	0.00292033	0.0910127	0.0494641
chr12	120186367	120186465	5433175	0	-	0.418367	(0.408,0.44]	chr12	519333	11	INTRON	INTRON	GCN1	ENSG00000089154.11	ENST00000300648.7	protein_coding	protein_coding	protein_coding	protein_coding	1	41	2	3.31257	3.822475	4.33238	0.0218901	0.00198621	0.11491	0.0411469
chr8	9004596	9004696	3695574	0	+	0.43	(0.408,0.44]	chr8	342899	3	SS5_PROX	SS5_PROX:INTRON	ERI1	ENSG00000104626.15	ENST00000519292.5:ENST00000521844.1:ENST00000250263.8:ENST00000520684.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	41	2	3.31257	3.822475	4.33238	0.0218901	0.00198621	0.11491	0.0411469
chr5	140430613	140430713	2503114	0	+	0.38	(0.378,0.408]	chr5	239166	280	INTRON	INTRON	ANKHD1	ENSG00000131503.21	ENST00000297183.10:ENST00000616482.4:ENST00000360839.7:ENST00000421134.5:ENST00000394723.7:ENST00000511151.5:ENST00000394722.7	protein_coding	protein_coding	protein_coding	protein_coding	2	58	2	2.11194	3.8224650000000002	5.53299	0.0292534	1.47095e-4	0.128055	0.0105341
chr18	55566203	55566303	6978475	0	-	0.3	(0.28,0.32]	chr18	690445	129	INTRON	INTRON	TCF4	ENSG00000196628.20	ENST00000354452.8:ENST00000616053.4:ENST00000636400.2:ENST00000356073.8:ENST00000636751.2:ENST00000635822.2:ENST00000637115.2:ENST00000638154.3:ENST00000564999.5:ENST00000629387.2:ENST00000568673.5:ENST00000540999.5:ENST00000537578.5:ENST00000568740.5:ENST00000565018.6:ENST00000566279.5:ENST00000566286.5:ENST00000567880.5:ENST00000398339.5:ENST00000564403.6:ENST00000627136.2:ENST00000566514.5:ENST00000630319.2:ENST00000568169.5:ENST00000565908.6:ENST00000627685.2:ENST00000626595.2:ENST00000626425.2:ENST00000563824.5:ENST00000568147.5:ENST00000563888.6:ENST00000564343.5:ENST00000627784.2:ENST00000562543.5:ENST00000562847.5:ENST00000569357.4:ENST00000674598.1:ENST00000627320.2:ENST00000630224.2:ENST00000565124.4:ENST00000627568.2:ENST00000637941.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	47	2	2.29724	3.822445	5.34765	0.0554156	0.00287138	0.18407	0.0474836
chr11	9220102	9220202	4908619	0	-	0.3	(0.28,0.32]	chr11	460107	121	INTRON	INTRON	DENND5A	ENSG00000184014.9	ENST00000328194.8:ENST00000681203.1:ENST00000530780.2:ENST00000679999.1:ENST00000680470.1:ENST00000680554.1:ENST00000681425.1:ENST00000679568.1:ENST00000679446.1:ENST00000680294.1:ENST00000680742.1:ENST00000680885.1:ENST00000530044.5:ENST00000526707.5:ENST00000532696.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	49	2	2.39347	3.8224400000000003	5.25141	0.0504457	0.00125199	0.156383	0.0328543
chr17	67355722	67355822	6826032	0	-	0.29	(0.28,0.32]	chr17	674610	3	SS3_PROX	SS3_PROX:INTRON	PSMD12	ENSG00000197170.10	ENST00000356126.8:ENST00000357146.4:ENST00000584008.5:ENST00000584289.5:ENST00000581618.1:ENST00000579365.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	49	2	2.39347	3.8224400000000003	5.25141	0.0504457	0.00125199	0.156383	0.0328543
chr5	154758481	154758581	2527029	0	+	0.45	(0.44,0.476]	chr5	241610	6	INTRON	INTRON	LARP1	ENSG00000155506.19	ENST00000687700.1:ENST00000336314.9:ENST00000690816.1:ENST00000518297.6:ENST00000517616.5:ENST00000518892.1:ENST00000521577.1:ENST00000519931.5:ENST00000524248.5:ENST00000685946.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	73	2	2.29258	3.822425	5.35227	0.00279559	8.47974e-4	0.0488779	0.0267232
chr16	21870882	21870981	6461952	0	-	0.424242	(0.408,0.44]	chr16	623467	47	INTRON	INTRON	NPIPB4	ENSG00000185864.18	ENST00000543449.1:ENST00000538859.1	protein_coding	processed_transcript	protein_coding	processed_transcript	4	78	2	1.7743	3.822385	5.87047	0.0244755	2.24671e-5	0.12011	0.0036973
chr9	130758054	130758154	4214305	0	+	0.39	(0.378,0.408]	chr9	386427	432	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000393293.4	protein_coding	protein_coding	protein_coding	protein_coding	2	60	2	2.5938	3.822355	5.05091	0.00614976	0.00118558	0.0676501	0.031662
chr4	23040982	23041080	1928534	0	+	0.408163	(0.378,0.408]	chr4	193952	4	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	ENSG00000248837	ENSG00000248837.7	ENST00000659942.1:ENST00000655325.1:ENST00000655182.1:ENST00000660103.1:ENST00000506425.2:ENST00000652324.1:ENST00000653008.1:ENST00000654546.1:ENST00000666412.1:ENST00000511453.5:ENST00000667179.1:ENST00000655768.1:ENST00000661585.1:ENST00000660296.1:ENST00000663529.1:ENST00000653872.1:ENST00000660370.1:ENST00000667156.1:ENST00000658109.1:ENST00000653188.1:ENST00000662431.1:ENST00000654588.1:ENST00000666579.1:ENST00000503017.2:ENST00000665739.1:ENST00000671537.1:ENST00000663348.1	lncRNA	lncRNA	lncRNA	lncRNA	1	42	2	2.36428	3.822305	5.28033	0.0441088	0.00143651	0.162255	0.0340925
chr12	121311804	121311904	5436758	0	-	0.41	(0.408,0.44]	chr12	519847	14	INTRON	INTRON	ANAPC5	ENSG00000089053.13	ENST00000261819.8:ENST00000535641.5:ENST00000541887.5:ENST00000534976.5:ENST00000441917.6:ENST00000539079.5:ENST00000544314.5:ENST00000535482.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	234	2	3.37887	3.82222	4.26557	1.9142e-6	1.14495e-6	8.42932e-4	6.75084e-4
chr11	85964161	85964260	5013761	0	-	0.292929	(0.28,0.32]	chr11	472906	30	INTRON	INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000530692.5:ENST00000526548.3:ENST00000630913.2:ENST00000529760.5:ENST00000528398.5:ENST00000532603.5:ENST00000356360.9:ENST00000529016.5:ENST00000526961.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	49	2	2.67975	3.822145	4.96454	0.0252505	0.00344078	0.12011	0.0539802
chr19	5104438	5104538	7004785	0	+	0.31	(0.28,0.32]	chr19	694855	216	INTRON	INTRON	KDM4B	ENSG00000127663.15	ENST00000159111.9:ENST00000611640.4:ENST00000381759.8:ENST00000536461.5:ENST00000589104.5:ENST00000588961.1:ENST00000588361.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	49	2	2.67975	3.822145	4.96454	0.0252505	0.00344078	0.12011	0.0539802
chr2	171104374	171104474	1263532	0	-	0.29	(0.28,0.32]	chr2	133913	127	INTRON	INTRON	TLK1	ENSG00000198586.14	ENST00000431350.7:ENST00000360843.7:ENST00000359766.7:ENST00000521943.5:ENST00000409443.6:ENST00000413010.5:ENST00000470340.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	49	2	2.67975	3.822145	4.96454	0.0252505	0.00344078	0.12011	0.0539802
chr10	72707284	72707384	4450237	0	+	0.47	(0.44,0.476]	chr10	410727	139	INTRON	INTRON	MCU	ENSG00000156026.15	ENST00000373053.8:ENST00000357157.10:ENST00000604679.5:ENST00000604372.5:ENST00000603649.5:ENST00000605597.5:ENST00000536019.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	39	2	2.9586	3.82212	4.68564	0.00816201	0.00758318	0.0773151	0.0766625
chr15	28623018	28623117	5988250	0	+	0.474747	(0.44,0.476]	chr15	569270	40	INTRON	INTRON	HERC2P9	ENSG00000206149.11	ENST00000689985.1:ENST00000688694.1:ENST00000529537.2:ENST00000529624.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	1	39	2	2.9586	3.82212	4.68564	0.00816201	0.00758318	0.0773151	0.0766625
chr15	41375113	41375211	6005210	0	+	0.44898	(0.44,0.476]	chr15	571351	31	INTRON	INTRON	NUSAP1	ENSG00000137804.14	ENST00000668273.1:ENST00000260359.10:ENST00000558123.5:ENST00000414849.6:ENST00000450592.6:ENST00000559596.6:ENST00000560747.5:ENST00000560177.5:ENST00000557840.5:ENST00000560898.5:ENST00000560318.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	39	2	2.9586	3.82212	4.68564	0.00816201	0.00758318	0.0773151	0.0766625
chr16	8828892	8828992	6284976	0	+	0.46	(0.44,0.476]	chr16	601852	3	SS3_PROX	SS3_PROX:INTRON	PMM2	ENSG00000140650.13	ENST00000566983.5:ENST00000683435.1:ENST00000683094.1:ENST00000566604.5:ENST00000570134.5:ENST00000268261.9:ENST00000683274.1:ENST00000682393.1:ENST00000566540.5:ENST00000562318.5:ENST00000570076.5:ENST00000569958.5:ENST00000565221.5:ENST00000567697.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	39	2	2.9586	3.82212	4.68564	0.00816201	0.00758318	0.0773151	0.0766625
chr8	123383760	123383859	4042516	0	-	0.464646	(0.44,0.476]	chr8	368789	27	INTRON	INTRON	ATAD2	ENSG00000156802.13	ENST00000287394.10:ENST00000517666.5:ENST00000521903.5:ENST00000519124.5:ENST00000521496.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	39	2	2.9586	3.82212	4.68564	0.00816201	0.00758318	0.0773151	0.0766625
chr8	52666440	52666538	3950618	0	-	0.469388	(0.44,0.476]	chr8	362343	44	INTRON	INTRON	RB1CC1	ENSG00000023287.13	ENST00000025008.10:ENST00000435644.6:ENST00000521611.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	52	2	2.44514	3.8219700000000003	5.1988	0.0087381	0.00151532	0.0845538	0.0352794
chr17	30762523	30762622	6590115	0	+	0.484848	(0.476,0.515]	chr17	640870	26	INTRON	INTRON	SUZ12P1	ENSG00000264538.7	ENST00000578070.5:ENST00000579526.5:ENST00000690405.1:ENST00000578195.6:ENST00000582557.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	1	41	2	2.38442	3.821935	5.25945	0.0417472	0.00111445	0.161736	0.0306328
chr4	163495735	163495835	2078166	0	+	0.36	(0.35,0.378]	chr4	205394	5	INTRON	INTRON	TMA16	ENSG00000198498.10	ENST00000509657.5:ENST00000513272.5:ENST00000508652.5:ENST00000511562.5:ENST00000513134.5:ENST00000358572.10:ENST00000508268.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	42	2	2.48657	3.8219000000000003	5.15723	0.032907	0.00272706	0.145164	0.0467523
chr7	133496578	133496678	3420611	0	+	0.36	(0.35,0.378]	chr7	319376	125	INTRON	INTRON	EXOC4	ENSG00000131558.15	ENST00000486013.5:ENST00000253861.5:ENST00000486409.6:ENST00000479839.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	42	2	2.48657	3.8219000000000003	5.15723	0.032907	0.00272706	0.145164	0.0467523
chr7	141609901	141610000	3439620	0	+	0.353535	(0.35,0.378]	chr7	320587	83	INTRON	INTRON	AGK	ENSG00000006530.18	ENST00000629555.2:ENST00000473247.5:ENST00000649365.1:ENST00000649014.1:ENST00000650365.1:ENST00000648489.1:ENST00000649286.2:ENST00000648690.1:ENST00000649790.1:ENST00000473884.5:ENST00000649914.1:ENST00000647568.1:ENST00000648395.1:ENST00000648068.1:ENST00000650547.1:ENST00000650006.1:ENST00000649538.1:ENST00000494688.1:ENST00000465241.5:ENST00000647898.1:ENST00000496273.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	42	2	2.48657	3.8219000000000003	5.15723	0.032907	0.00272706	0.145164	0.0467523
chr6	161196779	161196878	3255411	0	-	0.454545	(0.44,0.476]	chr6	302612	300	INTRON	INTRON	AGPAT4	ENSG00000026652.15	ENST00000320285.9:ENST00000366911.9:ENST00000436279.1:ENST00000624499.2:ENST00000366905.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	39	2	2.74372	3.82186	4.9	0.0153007	0.00423315	0.108569	0.0572185
chr7	33016464	33016559	3515953	0	-	0.463158	(0.44,0.476]	chr7	327851	2	INTRON	INTRON	NT5C3A	ENSG00000122643.23	ENST00000456458.5:ENST00000610140.7:ENST00000643244.1:ENST00000409467.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	39	2	2.74372	3.82186	4.9	0.0153007	0.00423315	0.108569	0.0572185
chr8	96259374	96259461	3995172	0	-	0.321839	(0.32,0.35]	chr8	365887	3	INTRON	INTRON	MTERF3	ENSG00000156469.9	ENST00000523821.5:ENST00000287025.4:ENST00000517720.1	protein_coding	protein_coding	protein_coding	protein_coding	1	43	2	3.0247	3.8217950000000003	4.61889	0.0166646	0.00671684	0.102621	0.0738715
chr7	100625670	100625768	3587168	0	-	0.5	(0.476,0.515]	chr7	334486	42	INTRON	INTRON	TFR2	ENSG00000106327.13	ENST00000431692.5:ENST00000462107.1:ENST00000223051.8:ENST00000465294.5:ENST00000490084.5:ENST00000462090.5:ENST00000476304.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	87	2	1.93124	3.821695	5.71215	0.00916342	5.54639e-5	0.0812949	0.00609037
chr4	56494358	56494457	1963205	0	+	0.363636	(0.35,0.378]	chr4	197005	24	INTRON	INTRON	SRP72	ENSG00000174780.17	ENST00000642900.1:ENST00000510663.6:ENST00000647432.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	56	2	2.10859	3.82165	5.53471	0.0272722	6.96925e-4	0.136494	0.024224
chr18	8611052	8611152	6868236	0	+	0.28	[0,0.28]	chr18	680454	7	INTRON	INTRON	RAB12	ENSG00000206418.5	ENST00000649141.2	protein_coding	protein_coding	protein_coding	protein_coding	1	53	2	2.44242	3.8215649999999997	5.20071	0.0491024	0.00261806	0.155269	0.0470772
chr7	17923312	17923412	3496395	0	-	0.25	[0,0.28]	chr7	326520	156	INTRON	INTRON	SNX13	ENSG00000071189.21	ENST00000428135.7:ENST00000611725.4:ENST00000409076.6:ENST00000444712.5:ENST00000482558.5:ENST00000409604.1:ENST00000475800.5:ENST00000474067.5:ENST00000471744.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	53	2	2.49527	3.8215200000000005	5.14777	0.0436497	0.00311898	0.14882	0.0512673
chr9	83690743	83690843	4272910	0	-	0.33	(0.32,0.35]	chr9	392981	42	INTRON	INTRON	UBQLN1	ENSG00000135018.14	ENST00000376395.9:ENST00000257468.11:ENST00000529923.1	protein_coding	protein_coding	protein_coding	protein_coding	1	47	2	2.84812	3.8214699999999997	4.79482	0.0147575	0.00447781	0.0983813	0.0610799
chr1	231030929	231031029	655335	0	-	0.5	(0.476,0.515]	chr1	77736	23	INTRON	INTRON	FAM89A	ENSG00000182118.8	ENST00000366654.5	protein_coding	protein_coding	protein_coding	protein_coding	1	42	2	2.9435	3.82134	4.69918	0.00929849	0.00400966	0.0817766	0.057767
chr10	42807311	42807410	4428280	0	+	0.40404	(0.378,0.408]	chr10	408133	47	INTRON	INTRON	BMS1	ENSG00000165733.8	ENST00000374518.6	protein_coding	protein_coding	protein_coding	protein_coding	4	73	2	1.93153	3.82132	5.71111	0.0127237	2.59738e-4	0.0986314	0.0148796
chr12	95484700	95484793	5193121	0	+	0.333333	(0.32,0.35]	chr12	491135	11	INTRON	INTRON	METAP2	ENSG00000111142.14	ENST00000535095.5:ENST00000546753.5:ENST00000261220.13:ENST00000323666.10:ENST00000553151.5:ENST00000549502.5:ENST00000550777.5:ENST00000551840.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	77	2	1.60297	3.821295	6.03962	0.0647328	2.28019e-5	0.179192	0.0037274
chr1	235233912	235234012	662913	0	-	0.48	(0.476,0.515]	chr1	78511	1	SS5_PROX	SS5_PROX:INTRON	ARID4B	ENSG00000054267.22	ENST00000349213.7:ENST00000366603.6:ENST00000264183.9:ENST00000421364.5:ENST00000491632.5:ENST00000471257.5:ENST00000418304.1:ENST00000466653.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	72	2	2.14389	3.82128	5.49867	0.00540862	4.28561e-4	0.066545000000000007	0.0189958
chr2	96201346	96201446	1179920	0	-	0.41	(0.408,0.44]	chr2	126153	54	INTRON	INTRON	STARD7	ENSG00000084090.14	ENST00000337288.10:ENST00000443962.1:ENST00000488084.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	41	2	2.3975	3.821255	5.24501	0.040266	0.00137378	0.161534	0.0336718
chr20	50514687	50514787	7285957	0	+	0.42	(0.408,0.44]	chr20	741241	37	INTRON	INTRON	PTPN1	ENSG00000196396.10	ENST00000541713.5:ENST00000371621.5	protein_coding	protein_coding	protein_coding	protein_coding	1	41	2	2.3975	3.821255	5.24501	0.040266	0.00137378	0.161534	0.0336718
chr7	66445882	66445982	3538954	0	-	0.33	(0.32,0.35]	chr7	330148	62	INTRON	INTRON	LINC00174	ENSG00000179406.9	ENST00000638517.1:ENST00000640964.1:ENST00000442578.5:ENST00000639086.1:ENST00000638592.1	lncRNA	lncRNA	lncRNA	lncRNA	1	43	2	2.56618	3.821235	5.07629	0.0274185	0.00468114	0.136498	0.0600108
chr7	123548494	123548593	3631875	0	-	0.333333	(0.32,0.35]	chr7	337500	18	EXON_MRNA	EXON_MRNA:INTRON	NDUFA5	ENSG00000128609.16	ENST00000355749.7:ENST00000471770.5:ENST00000678090.1:ENST00000679163.1:ENST00000676614.1:ENST00000677251.1:ENST00000676730.1:ENST00000677306.1:ENST00000676516.1:ENST00000677391.1:ENST00000677264.1:ENST00000611607.4:ENST00000618945.4:ENST00000492549.6:ENST00000678032.1:ENST00000679052.1:ENST00000467117.6:ENST00000677134.1:ENST00000378795.9:ENST00000470123.2:ENST00000466896.5:ENST00000678251.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	43	2	2.56618	3.821235	5.07629	0.0274185	0.00468114	0.136498	0.0600108
chr1	153943630	153943711	557949	0	-	0.333333	(0.32,0.35]	chr1	66108	1	SS5_PROX	SS5_PROX:INTRON	DENND4B	ENSG00000198837.10	ENST00000361217.9:ENST00000368646.6:ENST00000472932.2	protein_coding	protein_coding	protein_coding	protein_coding	2	99	2	3.69582	3.8212	3.94658	7.3931e-4	1.32883e-4	0.0249744	0.00993659
chr17	60178675	60178772	6803694	0	-	0.329897	(0.32,0.35]	chr17	672158	15	UTR3	UTR3:EXON_MRNA	USP32	ENSG00000170832.13	ENST00000300896.9	protein_coding	protein_coding	protein_coding	protein_coding	1	46	2	2.21917	3.82111	5.42305	0.0641245	0.00149027	0.199279	0.035
chr6	4902556	4902655	2792126	0	+	0.454545	(0.44,0.476]	chr6	263614	98	INTRON	INTRON	CDYL	ENSG00000153046.18	ENST00000328908.9:ENST00000440139.5:ENST00000397588.8:ENST00000472453.5:ENST00000449732.6:ENST00000343762.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	52	2	2.49823	3.8210049999999995	5.14378	0.00718224	0.00184943	0.0756118	0.0388609
chr11	59654472	59654572	4954804	0	-	0.24	[0,0.28]	chr11	465302	4	SS3_PROX	SS3_PROX:INTRON	PATL1	ENSG00000166889.14	ENST00000300146.10	protein_coding	protein_coding	protein_coding	protein_coding	1	50	2	3.09587	3.8209850000000003	4.5461	0.0365918	0.00651565	0.138959	0.0735232
chr2	87796441	87796534	1172899	0	-	0.473118	(0.44,0.476]	chr2	125226	2	INTRON	INTRON	RGPD2	ENSG00000185304.16	ENST00000398146.5	protein_coding	protein_coding	protein_coding	protein_coding	2	52	2	2.39003	3.8209099999999996	5.25179	0.0106488	0.00124521	0.0915714	0.0322969
chr10	46018922	46019022	4608825	0	-	0.42	(0.408,0.44]	chr10	424575	2	SS5_PROX	SS5_PROX:INTRON	NCOA4	ENSG00000266412.6	ENST00000581486.6:ENST00000585132.5:ENST00000585056.5:ENST00000583565.5:ENST00000580070.5:ENST00000578454.5:ENST00000579039.2	protein_coding	protein_coding	protein_coding	protein_coding	1	45	2	3.63785	3.82085	4.00385	0.0454568	4.70012e-4	0.149888	0.0196294
chr6	28595539	28595638	3075151	0	-	0.565657	(0.515,0.57]	chr6	285906	9	INTRON	INTRON	ZBED9	ENSG00000232040.4	ENST00000646382.1:ENST00000530247.1:ENST00000524745.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	48	2	2.73258	3.82085	4.90912	0.00260192	0.0021669	0.0470772	0.0417866
chr8	52685620	52685692	3950816	0	-	0.319444	(0.28,0.32]	chr8	362378	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RB1CC1	ENSG00000023287.13	ENST00000025008.10:ENST00000435644.6:ENST00000521611.1:ENST00000518710.5:ENST00000517963.1:ENST00000518211.1:ENST00000518468.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	102	2	1.83163	3.820715	5.8098	0.00983832	5.67703e-4	0.0877296	0.0220072
chr11	112088144	112088244	4865498	0	+	0.32	(0.28,0.32]	chr11	454014	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SDHD	ENSG00000204370.13	ENST00000640554.1:ENST00000528182.5:ENST00000528021.6:ENST00000375549.8:ENST00000528048.5:ENST00000525291.5:ENST00000526592.5:ENST00000530923.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	56	2	3.30263	3.8206300000000004	4.33863	0.0207276	0.0038504	0.122348	0.0542786
chr22	21582267	21582367	7481850	0	+	0.37	(0.35,0.378]	chr22	763232	135	INTRON	INTRON	UBE2L3	ENSG00000185651.16	ENST00000458578.6:ENST00000545681.2:ENST00000696046.1:ENST00000342192.9:ENST00000496722.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	67	2	2.43108	3.8206300000000004	5.21018	0.00345501	0.00228003	0.0539802	0.0426265
chr10	5805292	5805391	4544838	0	-	0.363636	(0.35,0.378]	chr10	419801	42	INTRON	INTRON	GDI2	ENSG00000057608.17	ENST00000380191.9:ENST00000380181.7:ENST00000456041.5:ENST00000418688.5:ENST00000608581.5:ENST00000380127.5:ENST00000609712.1	protein_coding	protein_coding	protein_coding	protein_coding	2	60	2	2.04224	3.820355	5.59847	0.0363073	1.39739e-4	0.138959	0.0101825
chrX	154696519	154696575	7914768	0	-	0.428571	(0.408,0.44]	chrX	806075	1	INTRON	INTRON	GAB3	ENSG00000160219.12	ENST00000496390.5:ENST00000424127.3:ENST00000369575.7:ENST00000369568.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	62	2	2.85723	3.820355	4.78348	0.00290352	0.00211413	0.0494641	0.0415897
chr5	98895825	98895925	2683724	0	-	0.33	(0.32,0.35]	chr5	253902	2	SS5_PROX	SS5_PROX:INTRON	CHD1	ENSG00000153922.11	ENST00000614616.5:ENST00000284049.7	protein_coding	protein_coding	protein_coding	protein_coding	2	57	2	2.4053	3.8202499999999997	5.2352	0.0108284	0.0028268	0.0920575	0.0472361
chr1	222583136	222583234	641802	0	-	0.418367	(0.408,0.44]	chr1	75732	29	INTRON	INTRON	TAF1A	ENSG00000143498.18	ENST00000350027.8:ENST00000366890.5:ENST00000352967.9:ENST00000391883.2:ENST00000487009.5:ENST00000465263.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	68	2	2.00629	3.820115	5.63394	0.0189661	7.78928e-5	0.108861	0.00735438
chr12	121412967	121413067	5237080	0	+	0.5	(0.476,0.515]	chr12	497140	28	INTRON	INTRON	RNF34	ENSG00000170633.17	ENST00000613529.4:ENST00000361234.10:ENST00000392465.7:ENST00000556562.1:ENST00000553407.5:ENST00000554606.5:ENST00000392464.3:ENST00000555076.1:ENST00000554868.1:ENST00000557402.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	39	2	2.94692	3.82006	4.6932	0.00794331	0.00753088	0.0797304	0.074841
chr21	37198425	37198525	7406143	0	+	0.48	(0.476,0.515]	chr21	754819	4	SS5_PROX	SS5_PROX:INTRON	TTC3	ENSG00000182670.14	ENST00000492275.6:ENST00000418766.6:ENST00000450533.6:ENST00000696812.1:ENST00000696811.1:ENST00000463216.6:ENST00000411496.2:ENST00000399017.6:ENST00000354749.6:ENST00000479930.5:ENST00000476784.5:ENST00000428693.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	39	2	2.94692	3.82006	4.6932	0.00794331	0.00753088	0.0797304	0.074841
chr4	25823324	25823424	2120227	0	-	0.48	(0.476,0.515]	chr4	209446	8	INTRON	INTRON	SEL1L3	ENSG00000091490.11	ENST00000264868.9:ENST00000399878.8:ENST00000502949.5	protein_coding	protein_coding	protein_coding	protein_coding	1	39	2	2.94692	3.82006	4.6932	0.00794331	0.00753088	0.0797304	0.074841
chr4	39722945	39723044	1953240	0	+	0.494949	(0.476,0.515]	chr4	195630	242	INTRON	INTRON	UBE2K	ENSG00000078140.14	ENST00000510934.5:ENST00000261427.10:ENST00000438068.6:ENST00000513231.5:ENST00000503368.5:ENST00000445950.2:ENST00000510719.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	39	2	2.94692	3.82006	4.6932	0.00794331	0.00753088	0.0797304	0.074841
chr5	73009541	73009641	2388702	0	+	0.5	(0.476,0.515]	chr5	230540	26	INTRON	INTRON	FCHO2	ENSG00000157107.14	ENST00000430046.7:ENST00000507345.6:ENST00000512348.5:ENST00000287761.7	protein_coding	protein_coding	protein_coding	protein_coding	1	39	2	2.94692	3.82006	4.6932	0.00794331	0.00753088	0.0797304	0.074841
chr15	58702064	58702163	6193037	0	-	0.373737	(0.35,0.378]	chr15	589976	33	INTRON	INTRON	ADAM10	ENSG00000137845.15	ENST00000260408.8:ENST00000402627.5:ENST00000561288.1:ENST00000559053.1:ENST00000558733.5:ENST00000439637.5:ENST00000497846.5:ENST00000558004.1:ENST00000560608.5:ENST00000561149.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	45	2	2.32443	3.8199949999999996	5.31556	0.0544216	4.97087e-4	0.164972	0.0201536
chr4	82452240	82452339	1986855	0	+	0.363636	(0.35,0.378]	chr4	198665	6	INTRON	INTRON	ENOPH1	ENSG00000145293.17	ENST00000273920.8:ENST00000509635.5:ENST00000505846.5	protein_coding	protein_coding	protein_coding	protein_coding	1	45	2	2.32443	3.8199949999999996	5.31556	0.0544216	4.97087e-4	0.164972	0.0201536
chr15	28927542	28927642	5990291	0	+	0.38	(0.378,0.408]	chr15	569580	54	INTRON	INTRON	APBA2	ENSG00000034053.15	ENST00000561069.5:ENST00000558402.5:ENST00000683413.1:ENST00000558330.5:ENST00000559814.5:ENST00000559709.5:ENST00000558804.5:ENST00000411764.5:ENST00000558259.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	43	2	2.26252	3.819955	5.37739	0.056222	0.0010014	0.18407	0.0288906
chr3	186967108	186967207	1586542	0	+	0.393939	(0.378,0.408]	chr3	164332	28	INTRON	INTRON	ST6GAL1	ENSG00000073849.16	ENST00000676786.1:ENST00000169298.8:ENST00000457772.6:ENST00000455441.5:ENST00000427315.5:ENST00000677292.1:ENST00000458216.5:ENST00000430309.5:ENST00000417392.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	53	2	2.46345	3.81986	5.17627	0.00827342	0.00208234	0.0813266	0.0411801
chr12	6589014	6589107	5259456	0	-	0.494624	(0.476,0.515]	chr12	500742	2	INTRON	INTRON	CHD4	ENSG00000111642.16	ENST00000645022.1:ENST00000544040.7:ENST00000544484.6:ENST00000357008.7:ENST00000642810.1:ENST00000643335.1:ENST00000643815.1:ENST00000646806.1:ENST00000644137.1:ENST00000642879.1:ENST00000645645.1:ENST00000642594.1:ENST00000646268.1:ENST00000645095.1:ENST00000644352.1:ENST00000647483.1:ENST00000646608.1:ENST00000645005.1:ENST00000644801.1:ENST00000644289.1:ENST00000646366.1:ENST00000644356.1:ENST00000646070.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	39	2	2.73205	3.81983	4.90761	0.0159328	0.00386428	0.109464	0.0542786
chr18	12719620	12719717	6876077	0	+	0.484536	(0.476,0.515]	chr18	681242	6	INTRON	INTRON	PSMG2	ENSG00000128789.21	ENST00000585331.6:ENST00000586445.5:ENST00000590217.5:ENST00000586587.1:ENST00000317615.11	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	39	2	2.73205	3.81983	4.90761	0.0159328	0.00386428	0.109464	0.0542786
chr3	187060327	187060426	1587494	0	+	0.484848	(0.476,0.515]	chr3	164399	86	INTRON	INTRON	ST6GAL1	ENSG00000073849.16	ENST00000169298.8:ENST00000457772.6:ENST00000455441.5:ENST00000427315.5:ENST00000677292.1:ENST00000676633.1:ENST00000448044.5:ENST00000416235.6:ENST00000448449.1:ENST00000442023.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	39	2	2.73205	3.81983	4.90761	0.0159328	0.00386428	0.109464	0.0542786
chr2	69879599	69879698	805260	0	+	0.282828	(0.28,0.32]	chr2	89863	7	UTR3	UTR3:EXON_MRNA	GMCL1	ENSG00000087338.5	ENST00000282570.4	protein_coding	protein_coding	protein_coding	protein_coding	2	60	2	2.33771	3.8196199999999996	5.30153	0.0142701	0.00332518	0.103838	0.0512081
chr1	35388004	35388104	69499	0	+	0.27	[0,0.28]	chr1	8788	4	SS5_PROX	SS5_PROX:INTRON	ZMYM4	ENSG00000146463.12	ENST00000314607.11:ENST00000457946.1	protein_coding	protein_coding	protein_coding	protein_coding	1	53	2	2.54624	3.819525	5.09281	0.0388449	0.00372534	0.143072	0.0561984
chr1	17411721	17411821	384697	0	-	0.44	(0.408,0.44]	chr1	45444	2	SS5_PROX	SS5_PROX:INTRON	RCC2	ENSG00000179051.14	ENST00000375436.9:ENST00000375433.3	protein_coding	protein_coding	protein_coding	protein_coding	1	39	2	2.96007	3.819505	4.67894	0.0087648	0.00753901	0.0788605	0.0773151
chr17	42960691	42960774	6774685	0	-	0.409639	(0.408,0.44]	chr17	667580	1	SS5_PROX	SS5_PROX:INTRON	PTGES3L-AARSD1:AARSD1	ENSG00000108825.18:ENSG00000266967.7	ENST00000360221.8:ENST00000427569.7:ENST00000409399.6:ENST00000409103.5:ENST00000421990.7:ENST00000423601.2:ENST00000450475.5:ENST00000441280.7:ENST00000430739.5:ENST00000591910.5:ENST00000436545.5:ENST00000416949.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	39	2	2.96007	3.819505	4.67894	0.0087648	0.00753901	0.0788605	0.0773151
chr1	10416090	10416189	22650	0	+	0.484848	(0.476,0.515]	chr1	2416	3	INTRON	INTRON	PGD	ENSG00000142657.21	ENST00000270776.13:ENST00000483936.5:ENST00000493288.1:ENST00000498356.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	52	2	2.43242	3.8194350000000004	5.20645	0.0091895	0.00136049	0.0855292	0.0336321
chr2	15500561	15500660	1072553	0	-	0.333333	(0.32,0.35]	chr2	114429	112	INTRON	INTRON	NBAS	ENSG00000151779.13	ENST00000281513.10:ENST00000427792.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	133	2	3.73565	3.819395	3.90314	3.02468e-4	2.11801e-5	0.0160895	0.0035558
chr2	70214994	70215024	1152107	0	-	0.366667	(0.35,0.378]	chr2	123039	1	SS5_PROX	SS5_PROX:INTRON	C2orf42:TIA1	ENSG00000115998.8:ENSG00000116001.17	ENST00000470096.1:ENST00000415783.6:ENST00000433529.7:ENST00000282574.8:ENST00000445587.5:ENST00000486392.5:ENST00000495774.1:ENST00000454815.6:ENST00000468787.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	45	2	2.89003	3.8193149999999996	4.7486	0.0122391	0.00418965	0.0910127	0.0591344
chr1	8416530	8416630	369746	0	-	0.41	(0.408,0.44]	chr1	43438	502	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000377464.5:ENST00000400907.6:ENST00000476556.5:ENST00000656437.1:ENST00000488215.5:ENST00000460659.5:ENST00000492766.5:ENST00000465125.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	39	2	2.74518	3.8192250000000003	4.89327	0.0152229	0.00458906	0.108535	0.0595107
chr2	63901975	63902074	1138815	0	-	0.424242	(0.408,0.44]	chr2	121930	20	INTRON	INTRON	VPS54	ENSG00000143952.20	ENST00000409558.8:ENST00000272322.9:ENST00000354504.7:ENST00000416400.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	39	2	2.74518	3.8192250000000003	4.89327	0.0152229	0.00458906	0.108535	0.0595107
chr3	60156434	60156534	1711178	0	-	0.44	(0.408,0.44]	chr3	176138	757	INTRON	INTRON	FHIT	ENSG00000189283.10	ENST00000492590.6:ENST00000476844.5:ENST00000468189.5:ENST00000488467.5	protein_coding	protein_coding	protein_coding	protein_coding	1	39	2	2.74518	3.8192250000000003	4.89327	0.0152229	0.00458906	0.108535	0.0595107
chr7	158807862	158807962	3689597	0	-	0.58	(0.57,1]	chr7	342421	84	INTRON	INTRON	ESYT2	ENSG00000117868.18	ENST00000251527.10:ENST00000275418.13:ENST00000652148.1:ENST00000483958.5:ENST00000497111.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	150	2	3.69974	3.81921	3.93868	7.94667e-7	2.06243e-9	5.43864e-4	1.25034e-5
chr13	51958732	51958826	5596375	0	-	0.382979	(0.378,0.408]	chr13	534936	3	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	ATP7B	ENSG00000123191.16	ENST00000242839.10:ENST00000344297.9:ENST00000674147.1:ENST00000634810.1:ENST00000448424.7:ENST00000634620.1:ENST00000634296.1:ENST00000400370.8:ENST00000634844.1:ENST00000673772.1:ENST00000634308.1:ENST00000418097.7:ENST00000400366.6:ENST00000635406.1:ENST00000482841.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	73	2	1.89052	3.8191949999999997	5.74787	0.0148147	2.21531e-4	0.106702	0.0136064
chr11	125632565	125632662	4883055	0	+	0.391753	(0.378,0.408]	chr11	456569	28	INTRON	INTRON	CHEK1	ENSG00000149554.14	ENST00000438015.7:ENST00000427383.6:ENST00000428830.6:ENST00000544373.5:ENST00000278916.8:ENST00000532669.5:ENST00000527013.6:ENST00000526937.5:ENST00000532449.6:ENST00000531062.2:ENST00000534070.5:ENST00000524737.6:ENST00000531607.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	40	2	3.05393	3.8190999999999997	4.58427	0.0128325	0.00551532	0.0926667	0.0672816
chr6	35368727	35368827	2852240	0	+	0.38	(0.378,0.408]	chr6	269491	212	INTRON	INTRON	PPARD	ENSG00000112033.14	ENST00000418635.6:ENST00000448077.6:ENST00000360694.8:ENST00000311565.4:ENST00000337400.6	protein_coding	protein_coding	protein_coding	protein_coding	1	40	2	3.05393	3.8190999999999997	4.58427	0.0128325	0.00551532	0.0926667	0.0672816
chr9	77212278	77212373	4145271	0	+	0.4	(0.378,0.408]	chr9	377776	8	INTRON	INTRON	VPS13A	ENSG00000197969.14	ENST00000376636.7:ENST00000360280.8:ENST00000643348.1:ENST00000645632.1	protein_coding	protein_coding	protein_coding	protein_coding	1	40	2	3.05393	3.8190999999999997	4.58427	0.0128325	0.00551532	0.0926667	0.0672816
chr6	31757244	31757321	2843669	0	+	0.597403	(0.57,1]	chr6	267821	4	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MSH5:MSH5-SAPCD1	ENSG00000204410.16:ENSG00000255152.8	ENST00000375755.8:ENST00000375750.9:ENST00000650702.1:ENST00000493662.6:ENST00000375703.7:ENST00000375740.7:ENST00000423982.6:ENST00000463144.5:ENST00000450148.5:ENST00000468602.5:ENST00000468136.5:ENST00000395853.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	76	2	3.3877100000000002	3.818975	4.25024	9.08966e-6	6.01239e-6	0.00231903	0.0017156
chr18	2579923	2580022	6864476	0	+	0.181818	[0,0.28]	chr18	679858	5	INTRON	INTRON	NDC80	ENSG00000080986.13	ENST00000261597.9:ENST00000576274.2	protein_coding	protein_coding	protein_coding	protein_coding	2	65	2	2.28885	3.8188750000000002	5.3489	0.0181093	0.00514751	0.114853	0.062965
chr16	18846596	18846685	6457253	0	-	0.393258	(0.378,0.408]	chr16	622695	6	INTRON	INTRON	SMG1	ENSG00000157106.18	ENST00000446231.7:ENST00000565324.5:ENST00000563448.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	41	2	3.22599	3.81884	4.41169	0.0199606	0.00288652	0.109608	0.0494641
chr7	91999162	91999261	3351610	0	+	0.40404	(0.378,0.408]	chr7	312234	30	INTRON	INTRON	AKAP9	ENSG00000127914.19	ENST00000680534.1:ENST00000680513.1:ENST00000680072.1:ENST00000679821.1:ENST00000679554.1:ENST00000356239.8:ENST00000679521.1:ENST00000680181.1:ENST00000681722.1:ENST00000680766.1:ENST00000679448.1:ENST00000681412.1:ENST00000680047.1:ENST00000679474.1:ENST00000680952.1:ENST00000679457.1:ENST00000679722.1:ENST00000680074.1:ENST00000493453.1:ENST00000674381.2:ENST00000359028.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	41	2	3.22599	3.81884	4.41169	0.0199606	0.00288652	0.109608	0.0494641
chrX	40720180	40720280	7806625	0	-	0.38	(0.378,0.408]	chrX	796012	51	INTRON	INTRON	MED14	ENSG00000180182.11	ENST00000324817.6:ENST00000482034.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	41	2	3.22599	3.81884	4.41169	0.0199606	0.00288652	0.109608	0.0494641
chr19	1075774	1075873	6993734	0	+	0.373737	(0.35,0.378]	chr19	692778	5	INTRON	INTRON	ARHGAP45	ENSG00000180448.11	ENST00000539243.6:ENST00000313093.7:ENST00000587602.5:ENST00000591293.2:ENST00000590214.5:ENST00000586866.5:ENST00000543365.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	83	2	1.8773	3.8188	5.7603	0.0184031	6.3427e-5	0.108834	0.00658818
chr15	65711099	65711198	6208966	0	-	0.272727	[0,0.28]	chr15	592533	45	INTRON	INTRON	DENND4A	ENSG00000174485.16	ENST00000443035.8:ENST00000431932.6:ENST00000635620.2:ENST00000564674.5	protein_coding	protein_coding	protein_coding	protein_coding	1	48	2	2.69187	3.81874	4.94561	0.0221271	0.0150263	0.123903	0.0994339
chr5	70436841	70436935	2382947	0	+	0.212766	[0,0.28]	chr5	229728	15	INTRON	INTRON	GTF2H2B	ENSG00000226259.10	ENST00000508065.7:ENST00000513202.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	1	48	2	2.69187	3.81874	4.94561	0.0221271	0.0150263	0.123903	0.0994339
chr6	10949229	10949329	2812396	0	+	0.28	[0,0.28]	chr6	264672	61	INTRON	INTRON	SYCP2L	ENSG00000153157.13	ENST00000341041.8:ENST00000283141.11:ENST00000543878.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	48	2	2.69187	3.81874	4.94561	0.0221271	0.0150263	0.123903	0.0994339
chr1	193026788	193026886	612537	0	-	0.357143	(0.35,0.378]	chr1	72454	25	INTRON	INTRON	UCHL5	ENSG00000116750.14	ENST00000367455.8:ENST00000367454.6:ENST00000420791.5:ENST00000367450.7:ENST00000367451.8:ENST00000367449.5:ENST00000367448.5:ENST00000443327.5:ENST00000421683.1	protein_coding	protein_coding	protein_coding	protein_coding	3	126	2	3.41274	3.8187100000000003	4.22468	1.98559e-4	2.51082e-5	0.0129178	0.00392664
chr7	1451187	1451287	3462197	0	-	0.61	(0.57,1]	chr7	323713	5	INTRON	INTRON	MICALL2	ENSG00000164877.19	ENST00000472100.5:ENST00000297508.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	48	2	3.80923	3.81862	3.82801	1.11529e-4	9.41714e-5	0.00945289	0.00813008
chr18	12707221	12707320	6875951	0	+	0.383838	(0.378,0.408]	chr18	681230	1	INTRON	INTRON	PSMG2	ENSG00000128789.21	ENST00000585331.6:ENST00000586445.5:ENST00000590217.5:ENST00000586587.1:ENST00000317615.11	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	40	2	2.63247	3.81853	5.00459	0.0215745	0.00371142	0.123836	0.0535094
chr2	235598620	235598720	1042383	0	+	0.4	(0.378,0.408]	chr2	111222	737	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1:ENST00000402604.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	40	2	2.63247	3.81853	5.00459	0.0215745	0.00371142	0.123836	0.0535094
chr7	136134477	136134577	3431598	0	+	0.38	(0.378,0.408]	chr7	319911	169	INTRON	INTRON	ENSG00000232053	ENSG00000232053.7	ENST00000657456.1:ENST00000668062.1:ENST00000668668.1:ENST00000445293.6:ENST00000659747.1:ENST00000668896.1:ENST00000435996.1	lncRNA	lncRNA	lncRNA	lncRNA	1	40	2	2.63247	3.81853	5.00459	0.0215745	0.00371142	0.123836	0.0535094
chr11	63689668	63689768	4799995	0	+	0.33	(0.32,0.35]	chr11	444936	75	INTRON	INTRON	RTN3	ENSG00000133318.14	ENST00000341307.6:ENST00000356000.7:ENST00000542238.5:ENST00000538995.1:ENST00000339997.8:ENST00000540798.5:ENST00000537981.5:ENST00000377819.10:ENST00000536011.5:ENST00000543123.1:ENST00000543552.5:ENST00000545432.5:ENST00000338850.5:ENST00000354497.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	57	2	2.30476	3.81847	5.33218	0.0151817	0.00204346	0.108535	0.04086
chr12	22636350	22636450	5094854	0	+	0.32	(0.28,0.32]	chr12	481224	103	INTRON	INTRON	ETNK1	ENSG00000139163.16	ENST00000671733.1:ENST00000335148.8:ENST00000672951.1:ENST00000266517.9:ENST00000538218.2:ENST00000673496.1:ENST00000673406.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	45	2	2.97333	3.81846	4.66359	0.0193496	0.00857834	0.108861	0.083729
chr17	66354840	66354940	6662820	0	+	0.3	(0.28,0.32]	chr17	650324	149	INTRON	INTRON	PRKCA	ENSG00000154229.12	ENST00000413366.8:ENST00000578063.5:ENST00000284384.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	45	2	2.97333	3.81846	4.66359	0.0193496	0.00857834	0.108861	0.083729
chr1	245803241	245803341	673654	0	-	0.41	(0.408,0.44]	chr1	79663	144	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000366517.5:ENST00000366516.5:ENST00000490107.6:ENST00000470510.5:ENST00000483072.5:ENST00000490322.1:ENST00000493441.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	52	2	2.49983	3.818425	5.13702	0.00713527	0.00202889	0.0756118	0.04086
chrX	123657055	123657155	7878285	0	-	0.33	(0.32,0.35]	chrX	802527	113	INTRON	INTRON	THOC2	ENSG00000125676.20	ENST00000245838.13:ENST00000355725.8:ENST00000491737.5	protein_coding	protein_coding	protein_coding	protein_coding	2	99	2	3.54926	3.8184050000000003	4.08755	0.00133843	6.37693e-5	0.0335491	0.00660941
chr7	158755223	158755322	3689059	0	-	0.515152	(0.476,0.515]	chr7	342353	20	INTRON	INTRON	ESYT2	ENSG00000117868.18	ENST00000251527.10:ENST00000275418.13:ENST00000652148.1	protein_coding	protein_coding	protein_coding	protein_coding	2	52	2	2.37731	3.8183800000000003	5.25945	0.0111793	0.00111445	0.0937192	0.0306328
chr1	51858313	51858413	455092	0	-	0.45	(0.44,0.476]	chr1	54627	174	INTRON	INTRON	NRDC	ENSG00000078618.23	ENST00000354831.11:ENST00000539524.5:ENST00000352171.12:ENST00000491410.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	53	2	2.14573	3.8183499999999997	5.49097	0.0238593	4.8612e-4	0.129075	0.0203841
chr10	45583946	45584046	4607057	0	-	0.42	(0.408,0.44]	chr10	424363	304	INTRON	INTRON	MARCHF8	ENSG00000165406.16	ENST00000319836.7:ENST00000602712.2:ENST00000453980.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	52	2	2.39162	3.818315	5.24501	0.0105837	0.00137378	0.0911864	0.0336718
chr3	14475707	14475807	1370144	0	+	0.43	(0.408,0.44]	chr3	144379	30	INTRON	INTRON	SLC6A6	ENSG00000131389.18	ENST00000613060.4:ENST00000618278.4:ENST00000610642.4:ENST00000649500.1:ENST00000622186.5:ENST00000452151.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	52	2	2.39162	3.818315	5.24501	0.0105837	0.00137378	0.0911864	0.0336718
chr22	49475898	49475998	7600838	0	-	0.32	(0.28,0.32]	chr22	778566	343	INTRON	INTRON	MIR3667HG	ENSG00000188511.13	ENST00000414287.5:ENST00000416411.1	lncRNA	lncRNA	lncRNA	lncRNA	1	46	2	3.1268	3.8183049999999996	4.50981	0.0275554	0.00508956	0.123904	0.0646039
chr4	94488335	94488434	1998747	0	+	0.292929	(0.28,0.32]	chr4	199549	313	INTRON	INTRON	PDLIM5	ENSG00000163110.15	ENST00000437932.5:ENST00000615540.4:ENST00000318007.9:ENST00000380180.7:ENST00000514830.5:ENST00000509333.5:ENST00000503974.5:ENST00000317968.9:ENST00000627587.2:ENST00000542407.5:ENST00000514743.5:ENST00000508216.5:ENST00000511767.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	46	2	3.1268	3.8183049999999996	4.50981	0.0275554	0.00508956	0.123904	0.0646039
chr7	108494711	108494809	3614323	0	-	0.285714	(0.28,0.32]	chr7	336975	29	INTRON	INTRON	PNPLA8	ENSG00000135241.17	ENST00000257694.13:ENST00000426128.6:ENST00000453144.5:ENST00000422087.5:ENST00000436062.5:ENST00000453085.1	protein_coding	protein_coding	protein_coding	protein_coding	1	46	2	3.1268	3.8183049999999996	4.50981	0.0275554	0.00508956	0.123904	0.0646039
chr1	193139372	193139472	284786	0	+	0.47	(0.44,0.476]	chr1	32776	8	INTRON	INTRON	CDC73	ENSG00000134371.14	ENST00000649895.1:ENST00000643006.1:ENST00000367435.5:ENST00000650197.1:ENST00000643784.1:ENST00000648071.1:ENST00000635846.1:ENST00000649606.1:ENST00000647662.1:ENST00000649706.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	56	2	2.13779	3.818285	5.49878	0.0264596	1.52058e-4	0.122506	0.0106137
chr12	109962968	109963066	5408039	0	-	0.459184	(0.44,0.476]	chr12	516285	9	INTRON	INTRON	GIT2	ENSG00000139436.22	ENST00000355312.8:ENST00000361006.9:ENST00000457474.6:ENST00000553118.5:ENST00000551209.5:ENST00000550186.5:ENST00000547815.5:ENST00000320063.10:ENST00000551455.5:ENST00000551721.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	56	2	2.13779	3.818285	5.49878	0.0264596	1.52058e-4	0.122506	0.0106137
chr22	20541591	20541690	7479693	0	+	0.474747	(0.44,0.476]	chr22	762972	40	INTRON	INTRON	MED15	ENSG00000099917.17	ENST00000445987.5:ENST00000444094.5:ENST00000414658.5:ENST00000486656.5:ENST00000433831.5:ENST00000432052.5:ENST00000292733.11:ENST00000263205.11:ENST00000477824.5:ENST00000406969.5:ENST00000382974.6:ENST00000441501.5:ENST00000445189.5:ENST00000451058.5:ENST00000473028.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	56	2	2.13779	3.818285	5.49878	0.0264596	1.52058e-4	0.122506	0.0106137
chr1	61724425	61724525	468370	0	-	0.32	(0.28,0.32]	chr1	56588	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TM2D1	ENSG00000162604.12	ENST00000606498.5:ENST00000294613.9:ENST00000371180.6:ENST00000488206.5:ENST00000468586.5:ENST00000371178.5:ENST00000494926.5:ENST00000496465.1:ENST00000371177.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	67	2	2.33381	3.8181700000000003	5.30253	0.0174951	0.0010319	0.104863	0.0294094
chr2	53900017	53900117	1119832	0	-	0.36	(0.35,0.378]	chr2	119950	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	PSME4	ENSG00000068878.15	ENST00000404125.6:ENST00000389993.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	41	2	2.99173	3.81815	4.64457	0.012652	0.00713365	0.0926667	0.0756118
chr8	65603909	65604005	3959405	0	-	0.354167	(0.35,0.378]	chr8	363250	16	UTR3	UTR3:EXON_MRNA	ARMC1	ENSG00000104442.10	ENST00000276569.8:ENST00000458464.3	protein_coding	protein_coding	protein_coding	protein_coding	1	41	2	2.99173	3.81815	4.64457	0.012652	0.00713365	0.0926667	0.0756118
chr1	11985853	11985952	26485	0	+	0.454545	(0.44,0.476]	chr1	3071	29	INTRON	INTRON	MFN2	ENSG00000116688.18	ENST00000444836.5:ENST00000674817.1:ENST00000675053.1:ENST00000675298.1:ENST00000675817.1:ENST00000675194.1:ENST00000676369.1:ENST00000412236.2:ENST00000675530.1:ENST00000674548.1:ENST00000675959.1:ENST00000675872.1:ENST00000676426.1:ENST00000674706.1:ENST00000674658.1:ENST00000674910.1:ENST00000675231.1:ENST00000490079.5:ENST00000484391.5:ENST00000497302.1:ENST00000235329.10:ENST00000676293.1:ENST00000675919.1:ENST00000675987.1:ENST00000675512.1:ENST00000675113.1:ENST00000675781.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	52	2	2.54944	3.818015	5.08659	0.00591346	0.00226401	0.0694038	0.0425438
chr5	10297554	10297653	2567386	0	-	0.343434	(0.32,0.35]	chr5	246101	64	INTRON	INTRON	CMBL	ENSG00000164237.9	ENST00000296658.4:ENST00000510532.5:ENST00000511963.5:ENST00000506821.1:ENST00000514202.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	49	2	3.07935	3.81798	4.55661	0.00927858	0.00724137	0.0855292	0.0729826
chr7	148873453	148873553	3670655	0	-	0.38	(0.378,0.408]	chr7	340632	22	INTRON	INTRON	EZH2	ENSG00000106462.12	ENST00000683292.1:ENST00000320356.7:ENST00000492143.5:ENST00000478654.5:ENST00000350995.6:ENST00000460911.5:ENST00000683744.1:ENST00000682317.1:ENST00000682263.1:ENST00000476773.5:ENST00000483967.5:ENST00000498186.5:ENST00000483012.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	53	2	2.51464	3.81796	5.12128	0.00684341	0.00251746	0.0748032	0.0446195
chrY	11167329	11167429	7929685	0	-	0.38	(0.378,0.408]	chrY	807176	38	INTRON	INTRON	ENSG00000278212	ENSG00000278212.3	ENST00000652671.1:ENST00000651211.2:ENST00000687423.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	1	43	2	2.78946	3.817865	4.84627	0.0158859	0.00254319	0.101453	0.0465056
chr19	11934372	11934472	7019846	0	+	0.39	(0.378,0.408]	chr19	697884	87	INTRON	INTRON	ZNF700	ENSG00000196757.8	ENST00000622593.4:ENST00000254321.10	protein_coding	protein_coding	protein_coding	protein_coding	1	41	2	2.45932	3.817795	5.17627	0.0346754	0.00208234	0.148144	0.0411801
chr20	32469219	32469319	7325741	0	-	0.4	(0.378,0.408]	chr20	746077	37	INTRON	INTRON	NOL4L	ENSG00000197183.15	ENST00000621426.7:ENST00000359676.9:ENST00000475781.1:ENST00000375678.7:ENST00000375677.5:ENST00000326071.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	41	2	2.45932	3.817795	5.17627	0.0346754	0.00208234	0.148144	0.0411801
chr7	107140246	107140346	3378126	0	+	0.4	(0.378,0.408]	chr7	316264	116	INTRON	INTRON	PRKAR2B	ENSG00000005249.13	ENST00000265717.5:ENST00000393613.6:ENST00000488792.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	41	2	2.45932	3.817795	5.17627	0.0346754	0.00208234	0.148144	0.0411801
chr6	24777472	24777560	2836485	0	+	0.318182	(0.28,0.32]	chr6	265895	3	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	GMNN	ENSG00000112312.10	ENST00000356509.7:ENST00000230056.8:ENST00000468943.1:ENST00000620958.4:ENST00000378054.6:ENST00000476555.5:ENST00000378059.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	50	2	2.18975	3.81779	5.44583	0.0776042	5.8721e-4	0.196285	0.0220073
chr1	148263475	148263553	213772	0	+	0.384615	(0.378,0.408]	chr1	23723	1	EXON_SMALL	EXON_SMALL	RNVU1-22	ENSG00000199879.1	ENST00000363009.1	snRNA	snRNA	snRNA	snRNA	2	58	2	1.81685	3.81778	5.81871	0.0597868	1.62088e-4	0.189982	0.0116382
chr7	6578946	6579046	3273342	0	+	0.52	(0.515,0.57]	chr7	304355	2	SS5_PROX	SS5_PROX:INTRON	ZDHHC4	ENSG00000136247.15	ENST00000396707.6:ENST00000396713.6:ENST00000405731.7:ENST00000335965.11:ENST00000493944.5:ENST00000489138.5:ENST00000396709.5:ENST00000474097.5:ENST00000483589.5:ENST00000496017.1:ENST00000396706.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	36	2	2.65834	3.81778	4.97722	0.0187418	0.00168681	0.117523	0.0370386
chr8	140634388	140634487	4076555	0	-	0.787879	(0.57,1]	chr8	370289	72	INTRON	INTRON	AGO2	ENSG00000123908.12	ENST00000220592.10:ENST00000519980.5:ENST00000523609.5:ENST00000517293.5:ENST00000518019.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	35	2	2.50742	3.817775	5.12813	0.00631173	8.62401e-5	0.0687526	0.00783027
chr1	28677206	28677305	57901	0	+	0.353535	(0.35,0.378]	chr1	7515	80	INTRON	INTRON	GMEB1	ENSG00000162419.13	ENST00000361872.8:ENST00000294409.2:ENST00000373816.6	protein_coding	protein_coding	protein_coding	protein_coding	1	41	2	2.6498	3.817705	4.98561	0.0210137	0.00474226	0.122348	0.0600445
chr1	244656620	244656720	347746	0	+	0.25	[0,0.28]	chr1	40357	2	INTRON	INTRON	DESI2	ENSG00000121644.19	ENST00000263831.11:ENST00000302550.16:ENST00000418162.1	protein_coding	protein_coding	protein_coding	protein_coding	1	48	2	2.74901	3.8176300000000003	4.88625	0.0188843	0.0173315	0.118148	0.104099
chr12	756219	756318	5056213	0	+	0.272727	[0,0.28]	chr12	477423	15	INTRON	INTRON	WNK1	ENSG00000060237.19	ENST00000315939.11:ENST00000340908.9:ENST00000535572.5:ENST00000537687.5:ENST00000530271.6:ENST00000447667.2	protein_coding	protein_coding	protein_coding	protein_coding	1	48	2	2.74901	3.8176300000000003	4.88625	0.0188843	0.0173315	0.118148	0.104099
chr14	30933283	30933382	5856936	0	-	0.242424	[0,0.28]	chr14	556469	10	INTRON	INTRON	STRN3	ENSG00000196792.12	ENST00000355683.9:ENST00000357479.10:ENST00000555358.5:ENST00000556577.1:ENST00000554991.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	48	2	2.74901	3.8176300000000003	4.88625	0.0188843	0.0173315	0.118148	0.104099
chr16	75356681	75356781	6528520	0	-	0.28	[0,0.28]	chr16	632300	503	INTRON	INTRON	CFDP1	ENSG00000153774.9	ENST00000283882.4:ENST00000564793.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	48	2	2.74901	3.8176300000000003	4.88625	0.0188843	0.0173315	0.118148	0.104099
chrX	138953825	138953925	7901101	0	-	0.24	[0,0.28]	chrX	804239	888	INTRON	INTRON	FGF13	ENSG00000129682.16	ENST00000441825.8:ENST00000626909.2:ENST00000436198.5:ENST00000455663.5:ENST00000448673.1:ENST00000421460.1	protein_coding	protein_coding	protein_coding	protein_coding	1	48	2	2.74901	3.8176300000000003	4.88625	0.0188843	0.0173315	0.118148	0.104099
chr13	79397804	79397904	5626325	0	-	0.2	[0,0.28]	chr13	536667	185	INTRON	INTRON	RBM26	ENSG00000139746.16	ENST00000438737.3:ENST00000438724.5:ENST00000622611.4:ENST00000267229.11:ENST00000472143.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	65	2	2.33097	3.8176050000000004	5.30424	0.0158969	0.00584781	0.109464	0.0667594
chr1	246118103	246118203	676813	0	-	0.24	[0,0.28]	chr1	79721	218	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000391836.3:ENST00000453676.5:ENST00000462422.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	65	2	2.20073	3.817505	5.43428	0.0235708	0.00400834	0.128907	0.0551303
chr12	28240280	28240380	5100770	0	+	0.25	[0,0.28]	chr12	481914	137	INTRON	INTRON	CCDC91	ENSG00000123106.11	ENST00000540794.5:ENST00000538586.5:ENST00000536154.5:ENST00000535520.5:ENST00000539107.5:ENST00000544649.5:ENST00000545336.5:ENST00000536442.6:ENST00000544780.5:ENST00000543534.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	48	2	2.63238	3.8175049999999997	5.00263	0.0259691	0.013055	0.133676	0.093385
chrX	123642696	123642794	7878136	0	-	0.244898	[0,0.28]	chrX	802513	17	INTRON	INTRON	THOC2	ENSG00000125676.20	ENST00000245838.13:ENST00000355725.8:ENST00000491737.5	protein_coding	protein_coding	protein_coding	protein_coding	1	48	2	2.63238	3.8175049999999997	5.00263	0.0259691	0.013055	0.133676	0.093385
chr4	139878	139978	1905799	0	+	0.42	(0.408,0.44]	chr4	191032	80	INTRON	INTRON	ZNF718	ENSG00000250312.8	ENST00000642529.1:ENST00000510175.6:ENST00000609714.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	87	2	3.75755	3.81743	3.87731	2.62433e-4	2.32969e-4	0.0143317	0.013966
chr12	49993730	49993830	5322341	0	-	0.5	(0.476,0.515]	chr12	507331	2	SS5_PROX	SS5_PROX:INTRON	RACGAP1	ENSG00000161800.13	ENST00000312377.10:ENST00000427314.6:ENST00000454520.6:ENST00000551016.5:ENST00000547905.5:ENST00000549342.1	protein_coding	protein_coding	protein_coding	protein_coding	6	215	2	2.86671	3.817405	4.7681	2.11053e-4	8.84953e-9	0.0132122	3.26741e-5
chr2	38579886	38579985	1099542	0	-	0.242424	[0,0.28]	chr2	117931	15	INTRON	INTRON	HNRNPLL	ENSG00000143889.16	ENST00000449105.8:ENST00000409636.5:ENST00000358367.8:ENST00000608859.5:ENST00000378915.7:ENST00000272249.7:ENST00000409328.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	66	2	2.00649	3.81721	5.62793	0.040391	0.0022037	0.161534	0.0417893
chr6	4869097	4869197	2791790	0	+	0.52	(0.515,0.57]	chr6	263602	324	INTRON	INTRON	CDYL	ENSG00000153046.18	ENST00000328908.9:ENST00000491864.1:ENST00000440139.5:ENST00000483019.1:ENST00000397588.8:ENST00000472453.5:ENST00000449732.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	135	2	3.24602	3.8168100000000003	4.3876	9.65273e-6	8.75303e-6	0.00227522	0.00224755
chr19	19387235	19387335	7035160	0	+	0.53	(0.515,0.57]	chr19	701429	7	INTRON	INTRON	GATAD2A	ENSG00000167491.18	ENST00000494516.6:ENST00000360315.7:ENST00000609040.5:ENST00000417582.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	75	2	3.49496	3.816655	4.13835	9.61701e-4	2.53131e-5	0.0282401	0.00394111
chr12	62361946	62362045	5150583	0	+	0.343434	(0.32,0.35]	chr12	487365	61	INTRON	INTRON	USP15	ENSG00000135655.16	ENST00000353364.7:ENST00000280377.10:ENST00000547317.5:ENST00000549268.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	69	2	2.3011	3.81664	5.33218	0.00617969	0.00204346	0.0713552	0.04086
chr7	152318131	152318231	3680110	0	-	0.25	[0,0.28]	chr7	341641	24	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000684262.1:ENST00000682301.1:ENST00000452749.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	100	2	1.65319	3.8165699999999996	5.97995	0.0275612	6.65031e-4	0.137011	0.023496
chr7	156822735	156822834	3687306	0	-	0.313131	(0.28,0.32]	chr7	342065	6	UTR3	UTR3:EXON_MRNA:INTRON	LMBR1	ENSG00000105983.23	ENST00000353442.10:ENST00000415428.5:ENST00000454132.5:ENST00000434503.5:ENST00000430278.5:ENST00000434278.5:ENST00000444719.5:ENST00000461469.5:ENST00000414218.1:ENST00000434453.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	60	2	2.24061	3.8164800000000003	5.39235	0.0194267	0.0024844	0.119831	0.0446195
chr6	49612196	49612296	3105207	0	-	0.41	(0.408,0.44]	chr6	290643	4	SS5_PROX	SS5_PROX:INTRON	RHAG	ENSG00000112077.18	ENST00000371175.10:ENST00000646272.1:ENST00000646939.1:ENST00000646963.1	protein_coding	protein_coding	protein_coding	protein_coding	16	449	2	3.20925	3.81591	4.42257	1.33286e-7	4.54084e-8	1.64866e-4	8.46643e-5
chr7	111170418	111170518	3620186	0	-	0.37	(0.35,0.378]	chr7	337093	2065	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	44	2	2.60341	3.8158649999999996	5.02832	0.0275785	0.00156444	0.123904	0.0365263
chr1	16248017	16248115	381561	0	-	0.346939	(0.32,0.35]	chr1	44836	13	UTR3	UTR3:EXON_MRNA	FBXO42	ENSG00000037637.11	ENST00000375592.8	protein_coding	protein_coding	protein_coding	protein_coding	1	48	2	2.99125	3.815855	4.64046	0.00958447	0.00724767	0.0820838	0.0756327
chrX	73965236	73965332	7682310	0	+	0.510417	(0.476,0.515]	chrX	786634	21	INTRON	INTRON	JPX	ENSG00000225470.8	ENST00000664637.1:ENST00000639185.1:ENST00000655090.1:ENST00000640437.1:ENST00000660546.1:ENST00000667886.1:ENST00000660840.1:ENST00000657179.1:ENST00000670506.1:ENST00000657910.1:ENST00000662120.1:ENST00000671207.1:ENST00000659254.1:ENST00000656624.1:ENST00000667573.1:ENST00000660856.1:ENST00000660836.1:ENST00000668590.1:ENST00000658649.1:ENST00000414209.6:ENST00000654137.1:ENST00000670994.1:ENST00000653479.1:ENST00000602772.5:ENST00000655879.1:ENST00000657372.1:ENST00000657096.1:ENST00000602985.6:ENST00000670685.1:ENST00000670503.1:ENST00000663027.1:ENST00000654995.1:ENST00000602895.6:ENST00000654374.1:ENST00000660087.1:ENST00000665032.1:ENST00000671336.1:ENST00000671476.1:ENST00000667057.1:ENST00000670192.1:ENST00000670464.1:ENST00000665345.1:ENST00000661546.1:ENST00000662543.1:ENST00000602938.6:ENST00000664295.1:ENST00000654005.1:ENST00000669149.1:ENST00000659852.1:ENST00000656509.1:ENST00000602294.6:ENST00000667294.1:ENST00000663470.1:ENST00000602920.6:ENST00000671021.1:ENST00000659849.1:ENST00000667937.1:ENST00000661130.1:ENST00000654196.1:ENST00000655994.1:ENST00000659373.1:ENST00000662239.1:ENST00000670805.1:ENST00000656263.1:ENST00000653069.1:ENST00000657638.1:ENST00000653808.1:ENST00000653929.1:ENST00000653885.1:ENST00000659023.1:ENST00000602546.5:ENST00000659622.1:ENST00000671518.1:ENST00000670408.1	lncRNA	lncRNA	lncRNA	lncRNA	2	53	2	2.13304	3.815855	5.49867	0.024866	4.28561e-4	0.132101	0.0189958
chr10	125129034	125129133	4714024	0	-	0.262626	[0,0.28]	chr10	434919	58	INTRON	INTRON	CTBP2	ENSG00000175029.17	ENST00000337195.9:ENST00000411419.6:ENST00000494626.6:ENST00000531469.5:ENST00000460976.5:ENST00000476817.1:ENST00000530884.1:ENST00000530930.1:ENST00000467395.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	53	2	2.33055	3.8158250000000002	5.3011	0.062338	0.00185843	0.175343	0.039946
chr2	86123862	86123962	822561	0	+	0.26	[0,0.28]	chr2	91787	1	SS5_PROX	SS5_PROX:INTRON	PTCD3	ENSG00000132300.19	ENST00000254630.12:ENST00000484203.5:ENST00000480102.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	53	2	2.33055	3.8158250000000002	5.3011	0.062338	0.00185843	0.175343	0.039946
chr7	121168236	121168336	3395451	0	+	0.25	[0,0.28]	chr7	317781	182	INTRON	INTRON	CPED1	ENSG00000106034.18	ENST00000310396.10:ENST00000450913.6:ENST00000423795.5:ENST00000466055.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	53	2	2.33055	3.8158250000000002	5.3011	0.062338	0.00185843	0.175343	0.039946
chr14	100271799	100271899	5815134	0	+	0.35	(0.32,0.35]	chr14	551344	65	INTRON	INTRON	YY1	ENSG00000100811.14	ENST00000262238.10:ENST00000553625.5:ENST00000554804.1:ENST00000651219.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	46	2	2.51061	3.8158	5.12099	0.0364463	0.00143632	0.138959	0.0347139
chr19	55020123	55020223	7100359	0	+	0.34	(0.32,0.35]	chr19	712212	127	INTRON	INTRON	GP6-AS1	ENSG00000267265.6	ENST00000593060.5:ENST00000586845.1	lncRNA	lncRNA	lncRNA	lncRNA	1	46	2	2.51061	3.8158	5.12099	0.0364463	0.00143632	0.138959	0.0347139
chr1	223805147	223805247	642962	0	-	0.44	(0.408,0.44]	chr1	75925	4	INTRON	INTRON	TP53BP2	ENSG00000143514.17	ENST00000343537.12:ENST00000391878.6:ENST00000494100.1:ENST00000496282.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	40	2	3.20437	3.81575	4.42713	0.0173083	0.00306596	0.104099	0.0509893
chr6	57154191	57154279	2878718	0	+	0.261364	[0,0.28]	chr6	273317	2	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	ZNF451	ENSG00000112200.17	ENST00000357489.7:ENST00000370706.9:ENST00000491832.6:ENST00000504603.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	86	2	2.62887	3.81575	5.00263	0.013055	0.00205554	0.093385	0.0420839
chr2	188243831	188243931	1294959	0	-	0.26	[0,0.28]	chr2	135671	149	INTRON	INTRON	LINC01090	ENSG00000231689.3	ENST00000434418.2:ENST00000632331.1:ENST00000415357.1	lncRNA	lncRNA	lncRNA	lncRNA	2	67	2	1.8986	3.81568	5.73276	0.0531512	0.00156565	0.179787	0.0360583
chr21	33545517	33545614	7397448	0	+	0.340206	(0.32,0.35]	chr21	753504	20	INTRON	INTRON	SON	ENSG00000159140.22	ENST00000356577.10:ENST00000381692.6:ENST00000475072.1:ENST00000695559.1:ENST00000455528.5:ENST00000300278.8:ENST00000381679.8:ENST00000492229.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	46	2	2.6321	3.8156600000000003	4.99922	0.0268	0.00223907	0.123349	0.0435144
chr17	19112334	19112418	6740860	0	-	0.535714	(0.515,0.57]	chr17	661757	5	EXON_LNCRNA	EXON_LNCRNA	ENSG00000262202	ENSG00000262202.4	ENST00000573866.2	lncRNA	lncRNA	lncRNA	lncRNA	14	428	2	3.76377	3.8156499999999998	3.86753	4.56123e-7	3.19946e-9	3.5553e-4	1.2263700000000001e-05
chr12	131744024	131744124	5249423	0	+	0.62	(0.57,1]	chr12	499173	152	INTRON	INTRON	SFSWAP	ENSG00000061936.10	ENST00000261674.9:ENST00000538548.5:ENST00000535236.5:ENST00000541286.5:ENST00000535202.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	26	2	3.02967	3.81564	4.60161	0.00471306	0.00142229	0.0631419	0.0340865
chr2	113756073	113756171	1216825	0	-	0.591837	(0.57,1]	chr2	129548	3	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	SLC35F5	ENSG00000115084.15	ENST00000245680.7:ENST00000409106.5:ENST00000409342.1:ENST00000498768.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	26	2	3.02967	3.81564	4.60161	0.00471306	0.00142229	0.0631419	0.0340865
chr4	1899217	1899306	1910853	0	+	0.58427	(0.57,1]	chr4	191730	1	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	NSD2	ENSG00000109685.19	ENST00000508803.6:ENST00000507820.5:ENST00000508355.5:ENST00000514045.5:ENST00000515806.1:ENST00000398261.6:ENST00000382891.9:ENST00000353275.9:ENST00000382892.6:ENST00000382895.7:ENST00000312087.10:ENST00000420906.6:ENST00000503128.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	26	2	3.02967	3.81564	4.60161	0.00471306	0.00142229	0.0631419	0.0340865
chr4	48834873	48834972	1958253	0	+	0.313131	(0.28,0.32]	chr4	196218	10	INTRON	INTRON	OCIAD1	ENSG00000109180.15	ENST00000504654.5:ENST00000509122.5:ENST00000505922.6:ENST00000509664.5:ENST00000514981.5:ENST00000512981.5:ENST00000507210.5:ENST00000508996.5:ENST00000396448.6:ENST00000512236.5:ENST00000509164.5:ENST00000381473.7:ENST00000511102.5:ENST00000264312.12:ENST00000444354.6:ENST00000509963.5:ENST00000509246.5:ENST00000506801.5:ENST00000503016.5:ENST00000510824.5:ENST00000507546.5:ENST00000513641.5:ENST00000425583.6:ENST00000508293.5:ENST00000513391.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	49	2	2.32871	3.81562	5.30253	0.0581621	0.0010319	0.167723	0.0294094
chr9	112325550	112325650	4317880	0	-	0.3	(0.28,0.32]	chr9	397079	273	INTRON	INTRON	PTBP3	ENSG00000119314.16	ENST00000334318.10:ENST00000458258.5:ENST00000374257.6:ENST00000374255.6:ENST00000343327.6:ENST00000487997.1:ENST00000210227.4:ENST00000450374.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	49	2	2.32871	3.81562	5.30253	0.0581621	0.0010319	0.167723	0.0294094
chr10	17449161	17449261	4568964	0	-	0.19	[0,0.28]	chr10	421387	582	INTRON	INTRON	ST8SIA6	ENSG00000148488.17	ENST00000377602.5:ENST00000648997.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	53	2	2.59548	3.8155799999999997	5.03568	0.0346067	0.00446141	0.136649	0.0610799
chr18	173109	173208	6854973	0	+	0.525253	(0.515,0.57]	chr18	679508	59	INTRON	INTRON	USP14	ENSG00000101557.15	ENST00000582707.5:ENST00000400266.7:ENST00000261601.8:ENST00000578942.5:ENST00000383589.6:ENST00000583119.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	57	2	2.06206	3.815565	5.56907	0.0135396	1.36543e-4	0.101363	0.0106702
chr6	116277724	116277823	3197594	0	-	0.555556	(0.515,0.57]	chr6	297825	30	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	TSPYL1	ENSG00000189241.8	ENST00000652202.1:ENST00000368608.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	57	2	2.06206	3.815565	5.56907	0.0135396	1.36543e-4	0.101363	0.0106702
chr7	152410840	152410940	3681042	0	-	0.54	(0.515,0.57]	chr7	341660	518	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000682301.1:ENST00000452749.2:ENST00000680867.1:ENST00000683800.1:ENST00000684278.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	131	2	3.61674	3.8155	4.01426	3.351e-5	1.58196e-6	0.00488123	7.57532e-4
chr12	112420323	112420423	5229812	0	+	0.45	(0.44,0.476]	chr12	495837	8	INTRON	INTRON	PTPN11	ENSG00000179295.19	ENST00000688597.1:ENST00000692624.1:ENST00000685487.1:ENST00000690210.1:ENST00000639857.2:ENST00000392597.5:ENST00000687906.1:ENST00000351677.7:ENST00000635625.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	61	2	2.848	3.815465	4.78293	0.00292033	0.00215274	0.0494641	0.0417866
chr7	156678388	156678488	3685842	0	-	0.5	(0.476,0.515]	chr7	341973	7	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	LMBR1	ENSG00000105983.23	ENST00000430825.3:ENST00000609081.1:ENST00000353442.10:ENST00000609774.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	40	2	2.47949	3.8154600000000003	5.15143	0.0326974	0.00166579	0.145164	0.0369207
chr1	28972738	28972838	59538	0	+	0.43	(0.408,0.44]	chr1	7621	576	INTRON	INTRON	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000647918.1:ENST00000646800.1:ENST00000644342.1:ENST00000646189.1:ENST00000482464.6:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000646260.1:ENST00000373798.5:ENST00000644600.1:ENST00000649674.1:ENST00000643173.1:ENST00000343067.9:ENST00000644780.1:ENST00000650265.1:ENST00000648181.1:ENST00000643604.1:ENST00000648891.1:ENST00000373797.2:ENST00000349460.9:ENST00000645184.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	52	2	2.33431	3.8152150000000002	5.29612	0.0129219	0.00113523	0.0990564	0.0307488
chr3	128765729	128765829	1497606	0	+	0.43	(0.408,0.44]	chr3	156330	390	INTRON	INTRON	RAB7A	ENSG00000075785.14	ENST00000676214.1:ENST00000675864.1:ENST00000675712.1:ENST00000676425.1:ENST00000490093.6:ENST00000675342.1:ENST00000265062.8:ENST00000674748.1:ENST00000493186.6:ENST00000482525.5:ENST00000491681.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	52	2	2.33431	3.8152150000000002	5.29612	0.0129219	0.00113523	0.0990564	0.0307488
chr21	38120814	38120908	7464096	0	-	0.382979	(0.378,0.408]	chr21	760309	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DSCR4	ENSG00000184029.9	ENST00000398948.5:ENST00000328264.7:ENST00000482032.1	lncRNA	lncRNA	lncRNA	lncRNA	10	340	2	3.49418	3.8151100000000002	4.13604	4.20234e-7	1.89973e-7	3.69778e-4	2.03069e-4
chr19	4411352	4411452	7001850	0	+	0.46	(0.44,0.476]	chr19	694523	12	INTRON	INTRON	CHAF1A	ENSG00000167670.16	ENST00000301280.10:ENST00000587739.1	protein_coding	protein_coding	protein_coding	protein_coding	1	39	2	3.02366	3.8150649999999997	4.60647	0.0102339	0.00603307	0.0850389	0.0700813
chr5	122821399	122821498	2466461	0	+	0.444444	(0.44,0.476]	chr5	236225	20	INTRON	INTRON	SNX2	ENSG00000205302.7	ENST00000379516.7:ENST00000514949.1:ENST00000510372.5:ENST00000506847.5:ENST00000514030.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	39	2	3.02366	3.8150649999999997	4.60647	0.0102339	0.00603307	0.0850389	0.0700813
chr10	96527412	96527496	4673824	0	-	0.321429	(0.32,0.35]	chr10	430659	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TM9SF3	ENSG00000077147.16	ENST00000371142.9:ENST00000649367.1:ENST00000485093.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	57	2	2.25173	3.81503	5.37833	0.0180122	0.00174321	0.114436	0.0375363
chr4	151002611	151002711	2271645	0	-	0.22	[0,0.28]	chr4	220921	732	INTRON	INTRON	LRBA	ENSG00000198589.14	ENST00000357115.9:ENST00000651943.2:ENST00000510413.5:ENST00000651035.1:ENST00000507224.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	65	2	2.3719	3.815025	5.25815	0.0139689	0.0066548	0.10247	0.0703807
chr10	97661518	97661616	4505076	0	+	0.5	(0.476,0.515]	chr10	414720	42	INTRON	INTRON	PI4K2A	ENSG00000155252.13	ENST00000370631.3	protein_coding	protein_coding	protein_coding	protein_coding	1	43	2	3.49411	3.814985	4.13586	0.031846	9.23453e-4	0.13151	0.0278392
chr15	92954922	92955022	6104261	0	+	0.36	(0.35,0.378]	chr15	581481	1	SS3_PROX	SS3_PROX:INTRON	CHD2	ENSG00000173575.22	ENST00000626874.2:ENST00000394196.9:ENST00000635856.1:ENST00000625990.3:ENST00000637572.1:ENST00000636881.1:ENST00000628181.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	60	2	1.98929	3.8149749999999996	5.64066	0.0417909	1.14247e-4	0.147075	0.0091431
chr5	119169026	119169121	2460772	0	+	0.515789	(0.515,0.57]	chr5	235718	8	INTRON	INTRON	DMXL1	ENSG00000172869.15	ENST00000539542.6:ENST00000311085.8:ENST00000504497.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	50	2	2.43783	3.814955	5.19208	0.00916404	3.4344e-4	0.0812949	0.0164987
chr3	12835335	12835430	1617446	0	-	0.578947	(0.57,1]	chr3	167008	10	UTR3	UTR3:EXON_MRNA	RPL32	ENSG00000144713.13	ENST00000429711.7:ENST00000396957.5	protein_coding	protein_coding	protein_coding	protein_coding	5	104	2	3.59033	3.8147249999999997	4.03912	1.72589e-5	4.13173e-8	0.00315885	7.91764e-5
chr10	42361633	42361732	4603392	0	-	0.575758	(0.57,1]	chr10	424089	2	INTRON	INTRON	ENSG00000215146	ENSG00000215146.5	ENST00000609841.1:ENST00000650175.1:ENST00000609034.1:ENST00000609502.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	2	34	2	2.6547	3.81464	4.97458	0.00346848	2.67728e-4	0.0539802	0.0149989
chr15	90909989	90910089	6102203	0	+	0.59	(0.57,1]	chr15	581117	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MAN2A2	ENSG00000196547.15	ENST00000560451.5:ENST00000558161.5:ENST00000559717.6:ENST00000560192.5:ENST00000360468.7:ENST00000557865.5:ENST00000560616.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	34	2	2.6547	3.81464	4.97458	0.00346848	2.67728e-4	0.0539802	0.0149989
chr7	33062720	33062796	3516435	0	-	0.605263	(0.57,1]	chr7	327915	1	UTR5	UTR5:EXON_MRNA	NT5C3A	ENSG00000122643.23	ENST00000456458.5:ENST00000610140.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	34	2	2.6547	3.81464	4.97458	0.00346848	2.67728e-4	0.0539802	0.0149989
chr10	67896225	67896325	4440518	0	+	0.45	(0.44,0.476]	chr10	409441	43	INTRON	INTRON	SIRT1	ENSG00000096717.12	ENST00000212015.11:ENST00000432464.5:ENST00000473922.1:ENST00000406900.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	39	2	2.66433	3.8146199999999997	4.96491	0.0194358	0.0034249	0.119831	0.0517761
chr12	57347078	57347178	5338418	0	-	0.46	(0.44,0.476]	chr12	510710	57	INTRON	INTRON	R3HDM2	ENSG00000179912.21	ENST00000402412.6:ENST00000347140.7:ENST00000634871.1:ENST00000448732.1	protein_coding	protein_coding	protein_coding	protein_coding	1	39	2	2.66433	3.8146199999999997	4.96491	0.0194358	0.0034249	0.119831	0.0517761
chr6	107369819	107369919	3181016	0	-	0.44	(0.408,0.44]	chr6	296346	351	INTRON	INTRON	PDSS2	ENSG00000164494.12	ENST00000369037.9:ENST00000369031.4	protein_coding	protein_coding	protein_coding	protein_coding	1	43	2	3.50731	3.81459	4.12187	0.0354689	8.5918e-4	0.137535	0.0265787
chr11	78461989	78462088	5000672	0	-	0.363636	(0.35,0.378]	chr11	472515	42	INTRON	INTRON	NARS2	ENSG00000137513.11	ENST00000695341.1:ENST00000281038.10:ENST00000695343.1:ENST00000695342.1:ENST00000695344.1:ENST00000529771.2:ENST00000695345.1:ENST00000695115.1:ENST00000695348.1:ENST00000695114.1:ENST00000695346.1:ENST00000695347.1:ENST00000695349.1:ENST00000695116.1:ENST00000695352.1:ENST00000695353.1:ENST00000695351.1:ENST00000695350.1:ENST00000695354.1:ENST00000695355.1:ENST00000528850.5:ENST00000695357.1:ENST00000695366.1:ENST00000695356.1:ENST00000695358.1:ENST00000695359.1:ENST00000695360.1:ENST00000695361.1:ENST00000695362.1:ENST00000525345.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	44	2	2.53856	3.81454	5.09052	0.0326077	0.00123501	0.133687	0.0326215
chr19	55188468	55188568	7213254	0	-	0.36	(0.35,0.378]	chr19	732641	3	SS3_PROX	SS3_PROX:INTRON	PTPRH	ENSG00000080031.10	ENST00000376350.8:ENST00000263434.5	protein_coding	protein_coding	protein_coding	protein_coding	1	44	2	2.53856	3.81454	5.09052	0.0326077	0.00123501	0.133687	0.0326215
chr5	179826514	179826613	2561714	0	+	0.363636	(0.35,0.378]	chr5	245049	9	INTRON	INTRON	SQSTM1	ENSG00000161011.20	ENST00000389805.9:ENST00000510187.5:ENST00000360718.5:ENST00000466342.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	44	2	2.53856	3.81454	5.09052	0.0326077	0.00123501	0.133687	0.0326215
chrX	21954729	21954829	7629996	0	+	0.36	(0.35,0.378]	chrX	781289	130	INTRON	INTRON	SMS	ENSG00000102172.16	ENST00000404933.7:ENST00000379404.5:ENST00000478094.1:ENST00000457085.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	44	2	2.53856	3.81454	5.09052	0.0326077	0.00123501	0.133687	0.0326215
chrX	73970475	73970574	7682363	0	+	0.292929	(0.28,0.32]	chrX	786638	21	INTRON	INTRON	JPX	ENSG00000225470.8	ENST00000664637.1:ENST00000639185.1:ENST00000655090.1:ENST00000640437.1:ENST00000660546.1:ENST00000667886.1:ENST00000660840.1:ENST00000657179.1:ENST00000670506.1:ENST00000657910.1:ENST00000662120.1:ENST00000671207.1:ENST00000659254.1:ENST00000656624.1:ENST00000667573.1:ENST00000660856.1:ENST00000660836.1:ENST00000668590.1:ENST00000658649.1:ENST00000414209.6:ENST00000654137.1:ENST00000670994.1:ENST00000602772.5:ENST00000655879.1:ENST00000657372.1:ENST00000657096.1:ENST00000602985.6:ENST00000670685.1:ENST00000670503.1:ENST00000663027.1:ENST00000654995.1:ENST00000602895.6:ENST00000654374.1:ENST00000660087.1:ENST00000665032.1:ENST00000671336.1:ENST00000671476.1:ENST00000667057.1:ENST00000670192.1:ENST00000670464.1:ENST00000665345.1:ENST00000661546.1:ENST00000662543.1:ENST00000602938.6:ENST00000664295.1:ENST00000654005.1:ENST00000669149.1:ENST00000659852.1:ENST00000656509.1:ENST00000602294.6:ENST00000667294.1:ENST00000663470.1:ENST00000602920.6:ENST00000671021.1:ENST00000659849.1:ENST00000667937.1:ENST00000661130.1:ENST00000654196.1:ENST00000655994.1:ENST00000659373.1:ENST00000662239.1:ENST00000670805.1:ENST00000656263.1:ENST00000653069.1:ENST00000657638.1:ENST00000653808.1:ENST00000653929.1:ENST00000653885.1:ENST00000659023.1:ENST00000602546.5:ENST00000659622.1:ENST00000671518.1:ENST00000670408.1	lncRNA	lncRNA	lncRNA	lncRNA	5	199	2	2.89007	3.8145350000000002	4.739	1.94598e-4	6.8566e-6	0.0122121	0.00196598
chr3	12838268	12838365	1617477	0	-	0.597938	(0.57,1]	chr3	167013	17	INTRON	INTRON	RPL32	ENSG00000144713.13	ENST00000429711.7:ENST00000396957.5:ENST00000273223.10:ENST00000435983.5:ENST00000396953.6:ENST00000457131.1	protein_coding	protein_coding	protein_coding	protein_coding	2	36	2	2.17026	3.81445	5.45864	0.0220522	1.90577e-5	0.123836	0.00354138
chr16	69371768	69371868	6508058	0	-	0.37	(0.35,0.378]	chr16	630118	1	SS5_PROX	SS5_PROX:INTRON	TERF2	ENSG00000132604.11	ENST00000254942.8:ENST00000569584.6:ENST00000566750.5:ENST00000569542.6:ENST00000566257.5:ENST00000564982.6:ENST00000569611.6:ENST00000567296.6:ENST00000569280.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	44	2	2.66547	3.814385	4.9633	0.0233639	0.00198929	0.118323	0.0411469
chr5	72895957	72896057	2387944	0	+	0.36	(0.35,0.378]	chr5	230469	6	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	TNPO1	ENSG00000083312.19	ENST00000680533.1:ENST00000337273.10:ENST00000680025.1:ENST00000523768.5:ENST00000681711.1:ENST00000679378.1:ENST00000506351.6:ENST00000605210.1:ENST00000680111.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	44	2	2.66547	3.814385	4.9633	0.0233639	0.00198929	0.118323	0.0411469
chr14	20992720	20992819	5656068	0	+	0.515152	(0.476,0.515]	chr14	539203	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	METTL17	ENSG00000165792.18	ENST00000339374.11:ENST00000382985.8:ENST00000554588.5:ENST00000556670.6:ENST00000555533.6:ENST00000555640.6:ENST00000553564.5:ENST00000557550.6:ENST00000554751.5:ENST00000553441.5:ENST00000553536.5:ENST00000555670.1:ENST00000555902.6:ENST00000555390.6:ENST00000554354.1:ENST00000557279.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	86	2	3.70553	3.814295	3.92306	3.44823e-4	1.72405e-4	0.0165103	0.0120625
chr12	42361802	42361901	5118586	0	+	0.383838	(0.378,0.408]	chr12	482951	2	INTRON	INTRON	PPHLN1	ENSG00000134283.18	ENST00000549190.5:ENST00000337898.10:ENST00000395580.7:ENST00000610488.4:ENST00000619544.4:ENST00000613154.4:ENST00000551723.5:ENST00000552429.5:ENST00000395568.6:ENST00000256678.12:ENST00000358314.12:ENST00000449194.6:ENST00000552761.5:ENST00000551406.5:ENST00000317560.13:ENST00000432191.6:ENST00000552202.5:ENST00000546750.5:ENST00000547847.1:ENST00000552794.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	81	2	1.70953	3.81419	5.91885	0.0190881	1.02858e-4	0.119229	0.00915589
chr18	21748700	21748800	6879811	0	+	0.4	(0.378,0.408]	chr18	681868	65	INTRON	INTRON	MIB1	ENSG00000101752.13	ENST00000578646.5:ENST00000261537.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	81	2	1.70953	3.81419	5.91885	0.0190881	1.02858e-4	0.119229	0.00915589
chr1	215569054	215569153	314192	0	+	0.262626	[0,0.28]	chr1	36190	9	INTRON	INTRON	KCTD3	ENSG00000136636.13	ENST00000259154.9	protein_coding	protein_coding	protein_coding	protein_coding	1	48	2	2.80396	3.814145	4.82433	0.0200334	0.0161429	0.109608	0.109464
chr5	132904180	132904267	2724666	0	-	0.390805	(0.378,0.408]	chr5	256315	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	AFF4	ENSG00000072364.13	ENST00000265343.10:ENST00000378595.7:ENST00000425658.1:ENST00000378593.6:ENST00000477369.5:ENST00000491831.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	53	2	2.56408	3.8141	5.06412	0.00566993	0.0030522	0.0678837	0.0493883
chr21	14760539	14760639	7430196	0	-	0.44	(0.408,0.44]	chr21	757888	61	INTRON	INTRON	ENSG00000232884	ENSG00000232884.10	ENST00000673788.1:ENST00000674136.1	lncRNA	lncRNA	lncRNA	lncRNA	3	65	2	2.60785	3.814065	5.02028	0.00303216	0.00146754	0.0493883	0.035104
chr1	167277120	167277219	245416	0	+	0.434343	(0.408,0.44]	chr1	29273	22	INTRON	INTRON	POU2F1	ENSG00000143190.23	ENST00000559038.5:ENST00000367866.7:ENST00000557909.5:ENST00000271411.8:ENST00000429375.6:ENST00000560232.6:ENST00000442313.5:ENST00000367865.5:ENST00000492850.5:ENST00000541643.7:ENST00000648671.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	43	2	2.27698	3.813925	5.35087	0.0583528	3.00323e-4	0.167723	0.0155054
chr6	132792742	132792840	3222770	0	-	0.418367	(0.408,0.44]	chr6	299650	15	INTRON	INTRON	SLC18B1	ENSG00000146409.12	ENST00000275227.9:ENST00000647932.1:ENST00000650278.1:ENST00000650136.1:ENST00000650298.1:ENST00000367918.1:ENST00000460518.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	43	2	2.27698	3.813925	5.35087	0.0583528	3.00323e-4	0.167723	0.0155054
chr1	113930239	113930339	191798	0	+	0.59	(0.57,1]	chr1	21121	3	SS5_PROX	SS5_PROX:INTRON	HIPK1	ENSG00000163349.22	ENST00000426820.7:ENST00000626993.2:ENST00000369559.8:ENST00000369558.5:ENST00000369561.8:ENST00000369555.6	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	2.66438	3.8138699999999996	4.96336	0.0171563	2.05554e-4	0.104099	0.0124557
chr1	16275934	16276034	381850	0	-	0.39	(0.378,0.408]	chr1	44869	188	INTRON	INTRON	FBXO42	ENSG00000037637.11	ENST00000375592.8	protein_coding	protein_coding	protein_coding	protein_coding	2	53	2	2.29798	3.81383	5.32968	0.0147606	0.00119786	0.106702	0.0315806
chr1	212872081	212872177	309980	0	+	0.40625	(0.378,0.408]	chr1	35798	21	INTRON	INTRON	FLVCR1	ENSG00000162769.13	ENST00000366971.9:ENST00000419102.1:ENST00000474693.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	53	2	2.29798	3.81383	5.32968	0.0147606	0.00119786	0.106702	0.0315806
chr7	12401661	12401761	3485419	0	-	0.38	(0.378,0.408]	chr7	325970	75	INTRON	INTRON	VWDE	ENSG00000146530.15	ENST00000275358.8:ENST00000452576.6:ENST00000521169.5:ENST00000326715.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	53	2	2.29798	3.81383	5.32968	0.0147606	0.00119786	0.106702	0.0315806
chr9	135960425	135960524	4372563	0	-	0.616162	(0.57,1]	chr9	402553	47	INTRON	INTRON	UBAC1	ENSG00000130560.9	ENST00000371756.4:ENST00000478485.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	125	2	3.65266	3.8138199999999998	3.97498	1.04936e-6	3.73505e-8	6.32938e-4	7.73898e-5
chr7	157187521	157187613	3454435	0	+	0.380435	(0.378,0.408]	chr7	322952	1	INTRON	INTRON	UBE3C	ENSG00000009335.18	ENST00000611269.4:ENST00000348165.10:ENST00000389103.4	protein_coding	protein_coding	protein_coding	protein_coding	3	119	2	3.28937	3.813775	4.33818	3.2389e-4	1.11892e-5	0.0165891	0.00247392
chr19	8015552	8015652	7010306	0	+	0.28	[0,0.28]	chr19	696051	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	ENSG00000267939	ENSG00000267939.1	ENST00000599756.1	lncRNA	lncRNA	lncRNA	lncRNA	2	72	2	1.98291	3.8137749999999997	5.64464	0.0494143	5.16173e-4	0.156195	0.0203753
chr6	44252618	44252692	2872899	0	+	0.513514	(0.476,0.515]	chr6	272617	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HSP90AB1	ENSG00000096384.20	ENST00000620073.4:ENST00000353801.7:ENST00000371646.10:ENST00000371554.2	protein_coding	protein_coding	protein_coding	protein_coding	3	123	2	2.93046	3.813645	4.69683	0.00118985	2.34578e-6	0.031662	0.00106747
chr15	30655187	30655286	5992570	0	+	0.30303	(0.28,0.32]	chr15	569759	58	INTRON	INTRON	ENSG00000284906:ENSG00000285035	ENSG00000284906.3:ENSG00000285035.2	ENST00000685924.1:ENST00000563110.6:ENST00000642399.2:ENST00000566548.5	protein_coding	protein_coding	protein_coding:transcribed_unprocessed_pseudogene	protein_coding:nonsense_mediated_decay:processed_transcript:transcribed_unprocessed_pseudogene	2	66	2	2.00989	3.81351	5.61713	0.0427801	2.86819e-4	0.148082	0.0150568
chr1	28737749	28737829	58350	0	+	0.6	(0.57,1]	chr1	7580	1	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	YTHDF2	ENSG00000198492.16	ENST00000542507.5:ENST00000474884.5:ENST00000373812.8:ENST00000541996.5:ENST00000478283.5:ENST00000496288.5:ENST00000476976.1:ENST00000475796.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	49	2	3.42323	3.813485	4.20374	8.58388e-4	8.34216e-6	0.0267428	0.00208368
chr8	23566544	23566633	3715476	0	+	0.337079	(0.32,0.35]	chr8	345232	3	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	SLC25A37	ENSG00000147454.14	ENST00000519973.6:ENST00000290075.10:ENST00000417331.6:ENST00000518881.5:ENST00000520654.1:ENST00000523930.1:ENST00000523883.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	33	966	2	2.94	3.81344	4.68688	3.81396e-7	2.10064e-9	3.17977e-4	8.86366e-6
chr19	56270135	56270234	7215099	0	-	0.535354	(0.515,0.57]	chr19	732972	35	INTRON	INTRON	ZSCAN5A	ENSG00000131848.10	ENST00000683990.1:ENST00000587340.5:ENST00000587492.5:ENST00000593106.5:ENST00000592509.5:ENST00000588955.5:ENST00000588442.5:ENST00000592679.5:ENST00000590675.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	38	2	3.03037	3.8133350000000004	4.5963	0.00608732	0.00370287	0.0676501	0.0561162
chr11	65626507	65626597	4806750	0	+	0.577778	(0.57,1]	chr11	446837	6	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PCNX3	ENSG00000197136.5	ENST00000355703.4:ENST00000530174.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	27	2	3.183	3.81333	4.44366	0.00254356	0.00210922	0.0448135	0.0425419
chr13	83019326	83019426	5633440	0	-	0.26	[0,0.28]	chr13	536804	2404	INTRON	INTRON	ENSG00000286385	ENSG00000286385.1	ENST00000663739.1	lncRNA	lncRNA	lncRNA	lncRNA	1	54	2	2.77716	3.8132349999999997	4.84931	0.022039	0.00779241	0.115395	0.0787356
chr9	91862668	91862768	4284389	0	-	0.46	(0.44,0.476]	chr9	393909	865	INTRON	INTRON	ROR2	ENSG00000169071.15	ENST00000375715.5:ENST00000375708.4:ENST00000550066.5:ENST00000495386.5:ENST00000546883.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	86	2	3.75608	3.813155	3.87023	2.6487e-4	2.32199e-4	0.0144071	0.0139633
chr12	69590872	69590970	5165435	0	+	0.510204	(0.476,0.515]	chr12	489244	8	INTRON	INTRON	CCT2	ENSG00000166226.13	ENST00000299300.11:ENST00000544368.6:ENST00000550010.5:ENST00000543146.2:ENST00000548787.1:ENST00000546850.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	39	2	3.01197	3.812995	4.61402	0.00947755	0.00633162	0.0817766	0.0722266
chr12	119848975	119849075	5431988	0	-	0.48	(0.476,0.515]	chr12	518998	144	INTRON	INTRON	CIT	ENSG00000122966.17	ENST00000392521.7:ENST00000261833.11:ENST00000612548.4:ENST00000536325.1	protein_coding	protein_coding	protein_coding	protein_coding	1	39	2	3.01197	3.812995	4.61402	0.00947755	0.00633162	0.0817766	0.0722266
chr3	150625861	150625954	1534678	0	+	0.483871	(0.476,0.515]	chr3	159955	6	INTRON	INTRON	SELENOT	ENSG00000198843.14	ENST00000480740.5:ENST00000477889.5:ENST00000471696.6:ENST00000492132.1:ENST00000485923.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	39	2	3.01197	3.812995	4.61402	0.00947755	0.00633162	0.0817766	0.0722266
chr7	6395237	6395337	3273231	0	+	0.48	(0.476,0.515]	chr7	304324	33	EXON_MRNA	EXON_MRNA:INTRON	RAC1	ENSG00000136238.19	ENST00000348035.9:ENST00000356142.4:ENST00000696666.1:ENST00000488373.5:ENST00000497741.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	39	2	3.01197	3.812995	4.61402	0.00947755	0.00633162	0.0817766	0.0722266
chr21	37102142	37102242	7405129	0	+	0.32	(0.28,0.32]	chr21	754591	9	INTRON	INTRON	TTC3	ENSG00000182670.14	ENST00000492275.6:ENST00000418766.6:ENST00000485402.5:ENST00000450533.6:ENST00000438055.5:ENST00000696812.1:ENST00000696811.1:ENST00000463216.6:ENST00000481605.6:ENST00000540756.5:ENST00000494243.5:ENST00000411496.2:ENST00000399017.6:ENST00000354749.6:ENST00000479930.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	60	2	2.4721	3.81284	5.15358	0.00906617	0.0052282	0.0854289	0.0633615
chr19	21146915	21147014	7040005	0	+	0.373737	(0.35,0.378]	chr19	701925	29	INTRON	INTRON	ZNF431	ENSG00000196705.8	ENST00000600692.5:ENST00000599296.5:ENST00000594425.5:ENST00000311048.11:ENST00000598331.1	protein_coding	protein_coding	protein_coding	protein_coding	1	47	2	3.12905	3.8126550000000003	4.49626	0.00917582	0.00566312	0.0855292	0.0653997
chr10	86493012	86493111	4659075	0	-	0.454545	(0.44,0.476]	chr10	429282	187	INTRON	INTRON	WAPL	ENSG00000062650.20	ENST00000298767.10	protein_coding	protein_coding	protein_coding	protein_coding	2	52	2	2.27304	3.812655	5.35227	0.0158915	8.47974e-4	0.109464	0.0267232
chr19	57852985	57853081	7106063	0	+	0.458333	(0.44,0.476]	chr19	713226	26	INTRON	INTRON	ENSG00000268750:ZNF587	ENSG00000268750.7:ENSG00000198466.12	ENST00000597134.5:ENST00000596498.2:ENST00000593873.6:ENST00000603271.1:ENST00000598031.1:ENST00000604231.1:ENST00000339656.8:ENST00000423137.1:ENST00000484707.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	52	2	2.27304	3.812655	5.35227	0.0158915	8.47974e-4	0.109464	0.0267232
chr10	45981036	45981135	4430468	0	+	0.515152	(0.476,0.515]	chr10	408468	52	INTRON	INTRON	TIMM23	ENSG00000265354.4	ENST00000580018.4	protein_coding	protein_coding	protein_coding	protein_coding	1	39	2	2.65268	3.812605	4.97253	0.0201975	0.00311573	0.121243	0.0498063
chr10	96881603	96881703	4503459	0	+	0.53	(0.515,0.57]	chr10	414536	228	INTRON	INTRON	LCOR	ENSG00000196233.14	ENST00000676067.1:ENST00000676257.1:ENST00000676187.1:ENST00000675151.1:ENST00000675687.1:ENST00000675251.1:ENST00000676123.1:ENST00000371103.8:ENST00000675471.1:ENST00000421806.4:ENST00000675902.1:ENST00000540664.6:ENST00000676414.1:ENST00000675537.1:ENST00000675117.1:ENST00000675125.1:ENST00000356016.7:ENST00000371097.8:ENST00000676381.1:ENST00000674796.1:ENST00000674725.1:ENST00000675971.1:ENST00000676373.1:ENST00000676314.1:ENST00000675915.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	37	2	2.46104	3.8125850000000003	5.16413	0.032841	8.14815e-4	0.145164	0.0263656
chr13	60159986	60160086	5604336	0	-	0.53	(0.515,0.57]	chr13	535547	266	INTRON	INTRON	DIAPH3	ENSG00000139734.19	ENST00000400324.9:ENST00000377908.6:ENST00000400319.5:ENST00000400320.5:ENST00000267215.8	protein_coding	protein_coding	protein_coding	protein_coding	1	37	2	2.46104	3.8125850000000003	5.16413	0.032841	8.14815e-4	0.145164	0.0263656
chr1	27543874	27543973	406864	0	-	0.494949	(0.476,0.515]	chr1	48993	86	INTRON	INTRON	AHDC1	ENSG00000126705.15	ENST00000247087.10:ENST00000673934.1:ENST00000644989.1:ENST00000374011.6:ENST00000642416.1:ENST00000642245.1	protein_coding	protein_coding	protein_coding	protein_coding	1	41	2	2.63168	3.81255	4.99342	0.0237106	0.00139274	0.118716	0.0341261
chr10	50099477	50099577	4433696	0	+	0.49	(0.476,0.515]	chr10	408888	1	SS3_PROX	SS3_PROX:INTRON	WASHC2A	ENSG00000099290.17	ENST00000611324.4:ENST00000351071.11:ENST00000314664.12:ENST00000434114.6:ENST00000282633.10:ENST00000399339.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	41	2	2.63168	3.81255	4.99342	0.0237106	0.00139274	0.118716	0.0341261
chr11	124995826	124995925	4881959	0	+	0.50505	(0.476,0.515]	chr11	456301	22	INTRON	INTRON	CCDC15	ENSG00000149548.15	ENST00000529051.5:ENST00000344762.6	protein_coding	protein_coding	protein_coding	protein_coding	1	41	2	2.63168	3.81255	4.99342	0.0237106	0.00139274	0.118716	0.0341261
chr14	23316141	23316240	5656895	0	+	0.484848	(0.476,0.515]	chr14	539442	45	INTRON	INTRON	BCL2L2-PABPN1	ENSG00000258643.6	ENST00000678502.1:ENST00000553781.5:ENST00000557008.2	protein_coding	protein_coding	protein_coding	protein_coding	1	41	2	2.63168	3.81255	4.99342	0.0237106	0.00139274	0.118716	0.0341261
chr5	73056890	73056985	2389191	0	+	0.357895	(0.35,0.378]	chr5	230602	4	INTRON	INTRON	FCHO2	ENSG00000157107.14	ENST00000430046.7:ENST00000512348.5	protein_coding	protein_coding	protein_coding	protein_coding	6	91	2	1.75806	3.81252	5.86698	0.01179	1.76496e-4	0.0962115	0.01216
chr1	96745438	96745538	168178	0	+	0.48	(0.476,0.515]	chr1	18215	215	INTRON	INTRON	PTBP2	ENSG00000117569.19	ENST00000482253.5:ENST00000675735.1:ENST00000609116.5:ENST00000674951.1:ENST00000675080.1:ENST00000426398.3:ENST00000460706.5:ENST00000370197.5:ENST00000370198.5:ENST00000476419.5:ENST00000676292.1:ENST00000676096.1:ENST00000675365.1:ENST00000674579.1:ENST00000675401.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	41	2	2.69967	3.81248	4.92529	0.0195838	0.00180221	0.109483	0.0392772
chr1	155523415	155523515	562502	0	-	0.51	(0.476,0.515]	chr1	67117	14	INTRON	INTRON	ASH1L	ENSG00000116539.14	ENST00000676814.1:ENST00000392403.8:ENST00000368346.7:ENST00000677213.1:ENST00000678117.1:ENST00000679097.1:ENST00000679333.1:ENST00000679133.1:ENST00000548830.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	41	2	2.69967	3.81248	4.92529	0.0195838	0.00180221	0.109483	0.0392772
chr1	172536683	172536782	254721	0	+	0.434343	(0.408,0.44]	chr1	30357	28	INTRON	INTRON	SUCO	ENSG00000094975.14	ENST00000367723.8:ENST00000608151.5:ENST00000616058.4:ENST00000263688.4:ENST00000610051.5:ENST00000608566.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	39	2	3.02513	3.8124599999999997	4.59979	0.0109537	0.0059965	0.0873034	0.0700606
chr14	55316783	55316882	5726250	0	+	0.414141	(0.408,0.44]	chr14	543460	183	INTRON	INTRON	FBXO34	ENSG00000178974.11	ENST00000681400.1:ENST00000681904.1:ENST00000679934.1:ENST00000681074.1:ENST00000680682.1:ENST00000680658.1:ENST00000313833.5:ENST00000554940.1:ENST00000440021.1:ENST00000555087.1:ENST00000557647.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	39	2	3.02513	3.8124599999999997	4.59979	0.0109537	0.0059965	0.0873034	0.0700606
chr15	89256011	89256110	6095852	0	+	0.434343	(0.408,0.44]	chr15	580086	8	INTRON	INTRON	FANCI	ENSG00000140525.20	ENST00000674831.1:ENST00000300027.12:ENST00000568670.5:ENST00000567891.5:ENST00000310775.12:ENST00000696717.1:ENST00000676003.1:ENST00000565255.5:ENST00000564920.5:ENST00000696718.1:ENST00000447611.6:ENST00000570110.1:ENST00000696719.1:ENST00000567996.5:ENST00000563250.5:ENST00000565522.5:ENST00000564636.1:ENST00000696720.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	39	2	3.02513	3.8124599999999997	4.59979	0.0109537	0.0059965	0.0873034	0.0700606
chr7	150328234	150328334	3446971	0	+	0.42	(0.408,0.44]	chr7	321725	2	SS3_PROX	SS3_PROX:INTRON	ZBED6CL:LRRC61	ENSG00000188707.7:ENSG00000127399.15	ENST00000343855.6:ENST00000463441.5:ENST00000323078.7:ENST00000493307.1:ENST00000359623.9	protein_coding	protein_coding	protein_coding:transcribed_unitary_pseudogene	protein_coding:processed_transcript	1	42	2	2.84077	3.812125	4.78348	0.0132196	0.00290352	0.0940535	0.0494641
chr17	32481128	32481228	6598726	0	+	0.35	(0.32,0.35]	chr17	642028	6	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PSMD11	ENSG00000108671.11	ENST00000649012.1:ENST00000457654.6:ENST00000261712.8	protein_coding	protein_coding	protein_coding	protein_coding	1	46	2	2.4458	3.81201	5.17822	0.0425977	0.00115625	0.148082	0.0313436
chr1	40261673	40261767	80809	0	+	0.393617	(0.378,0.408]	chr1	10466	3	INTRON	INTRON	ZMPSTE24	ENSG00000084073.10	ENST00000675937.1:ENST00000674703.1:ENST00000372759.4:ENST00000479131.5:ENST00000675754.1:ENST00000472583.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	45	2	2.13703	3.811875	5.48672	0.0797592	1.83012e-4	0.19979	0.01176
chr10	11993092	11993192	4557279	0	-	0.4	(0.378,0.408]	chr10	420588	136	INTRON	INTRON	UPF2	ENSG00000151461.20	ENST00000357604.10:ENST00000356352.6:ENST00000397053.6	protein_coding	protein_coding	protein_coding	protein_coding	1	45	2	2.13703	3.811875	5.48672	0.0797592	1.83012e-4	0.19979	0.01176
chr4	103125665	103125764	2214838	0	-	0.50505	(0.476,0.515]	chr4	216987	22	INTRON	INTRON	CENPE	ENSG00000138778.14	ENST00000380026.8:ENST00000265148.9	protein_coding	protein_coding	protein_coding	protein_coding	2	55	2	2.93046	3.81183	4.6932	0.00753088	0.00118985	0.074841	0.031662
chr2	210004962	210005061	1000345	0	+	0.343434	(0.32,0.35]	chr2	107376	11	INTRON	INTRON	RPE	ENSG00000197713.15	ENST00000354506.10:ENST00000436630.6:ENST00000408981.6:ENST00000429921.5:ENST00000454822.5:ENST00000453724.5:ENST00000359429.11:ENST00000438265.5:ENST00000429907.5:ENST00000438204.6:ENST00000452025.5:ENST00000445268.5:ENST00000441588.5:ENST00000438191.1:ENST00000411934.6:ENST00000435437.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	46	2	2.68921	3.81173	4.93425	0.0230336	0.00281048	0.118056	0.0488779
chr12	111547385	111547485	5412707	0	-	0.6	(0.57,1]	chr12	516916	217	INTRON	INTRON	ATXN2	ENSG00000204842.18	ENST00000642389.2:ENST00000608853.5:ENST00000672613.1:ENST00000673436.1:ENST00000643669.2:ENST00000616825.4:ENST00000389153.10:ENST00000550104.5:ENST00000483311.6:ENST00000672335.1:ENST00000492467.6:ENST00000673557.1:ENST00000673283.1:ENST00000673449.1:ENST00000535949.5:ENST00000542287.6:ENST00000644883.1:ENST00000647305.1:ENST00000671792.1:ENST00000392645.6:ENST00000672105.1:ENST00000471866.5:ENST00000549455.1:ENST00000548492.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	26	2	2.91889	3.81158	4.70427	0.00719009	9.25341e-4	0.0756118	0.0278396
chr13	50088356	50088455	5491042	0	+	0.474747	(0.44,0.476]	chr13	526033	45	INTRON	INTRON	DLEU1	ENSG00000176124.15	ENST00000469754.3:ENST00000655550.1:ENST00000467721.5:ENST00000468522.5:ENST00000490577.5:ENST00000491341.5:ENST00000491615.5:ENST00000463474.7:ENST00000468168.5:ENST00000476738.5:ENST00000461527.7:ENST00000486895.5:ENST00000659280.2	lncRNA	lncRNA	lncRNA	lncRNA	1	42	2	2.9195	3.811525	4.70355	0.0102021	0.00383786	0.0850389	0.0562562
chr10	43400436	43400536	4605419	0	-	0.38	(0.378,0.408]	chr10	424262	32	INTRON	INTRON	HNRNPF	ENSG00000169813.17	ENST00000356053.7:ENST00000357065.8:ENST00000682386.1:ENST00000337970.7	protein_coding	protein_coding	protein_coding	protein_coding	2	54	2	2.11103	3.8113849999999996	5.51174	0.0266911	5.93655e-4	0.134419	0.0225024
chr2	15433877	15433977	1071873	0	-	0.42	(0.408,0.44]	chr2	114368	57	INTRON	INTRON	NBAS	ENSG00000151779.13	ENST00000281513.10	protein_coding	protein_coding	protein_coding	protein_coding	5	156	2	3.0735	3.81053	4.54756	4.03962e-5	6.64901e-6	0.00515782	0.00194394
chr20	37518312	37518412	7340701	0	-	0.46	(0.44,0.476]	chr20	748112	10	UTR3	UTR3:EXON_MRNA:INTRON	BLCAP	ENSG00000166619.15	ENST00000467603.1:ENST00000373537.7:ENST00000397137.5:ENST00000414542.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	62	2	2.22103	3.810515	5.4	0.00776319	7.02611e-4	0.0787356	0.024224
chr17	61887693	61887792	6809187	0	-	0.373737	(0.35,0.378]	chr17	672701	23	INTRON	INTRON	INTS2	ENSG00000108506.13	ENST00000251334.7:ENST00000617492.4:ENST00000444766.7:ENST00000646745.1:ENST00000647009.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	55	2	2.63527	3.81044	4.98561	0.00474226	0.00443588	0.061054	0.0600445
chr11	63701154	63701253	4800110	0	+	0.282828	(0.28,0.32]	chr11	444936	190	INTRON	INTRON	RTN3	ENSG00000133318.14	ENST00000341307.6:ENST00000356000.7:ENST00000542238.5:ENST00000538995.1:ENST00000339997.8:ENST00000540798.5:ENST00000537981.5:ENST00000377819.10:ENST00000536011.5:ENST00000543123.1:ENST00000543552.5:ENST00000545432.5:ENST00000338850.5:ENST00000354497.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	74	2	2.41625	3.810425	5.2046	0.00448664	0.00419958	0.0593175	0.0592209
chr17	5427086	5427184	6551799	0	+	0.479592	(0.476,0.515]	chr17	636016	9	EXON_MRNA	EXON_MRNA:INTRON	RPAIN	ENSG00000129197.15	ENST00000573577.5:ENST00000571558.5:ENST00000575599.5:ENST00000571043.5:ENST00000571613.5:ENST00000539417.6:ENST00000381208.9:ENST00000536255.6:ENST00000327154.10:ENST00000381209.8:ENST00000575112.5:ENST00000570883.5:ENST00000573126.1:ENST00000405578.8:ENST00000574003.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	52	2	2.58615	3.810405	5.03466	0.00515536	0.00252065	0.0650394	0.0446195
chr4	68339181	68339280	2154779	0	-	0.373737	(0.35,0.378]	chr4	212284	4	INTRON	INTRON	YTHDC1	ENSG00000083896.13	ENST00000344157.9:ENST00000355665.7:ENST00000579690.5:ENST00000510746.1	protein_coding	protein_coding	protein_coding	protein_coding	1	44	2	2.47065	3.810405	5.15016	0.0386172	9.78549e-4	0.142656	0.0287765
chr1	27409191	27409291	405946	0	-	0.46	(0.44,0.476]	chr1	48945	1	SS5_PROX	SS5_PROX:INTRON	WASF2	ENSG00000158195.11	ENST00000618852.5:ENST00000536657.1	protein_coding	protein_coding	protein_coding	protein_coding	4	77	2	1.64563	3.810345	5.97506	0.0363922	1.26309e-5	0.138959	0.00264613
chr15	27155378	27155478	5983997	0	+	0.36	(0.35,0.378]	chr15	569164	1282	INTRON	INTRON	GABRG3	ENSG00000182256.13	ENST00000615808.5:ENST00000555083.5	protein_coding	protein_coding	protein_coding	protein_coding	4	76	2	1.68908	3.810275	5.93147	0.0301354	1.32665e-4	0.142482	0.0104884
chr19	18591318	18591414	7033307	0	+	0.541667	(0.515,0.57]	chr19	700958	5	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	REX1BD	ENSG00000006015.18	ENST00000598375.5:ENST00000450195.6:ENST00000358607.11:ENST00000600997.5:ENST00000601736.1:ENST00000597371.1:ENST00000595490.1:ENST00000595077.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	42	2	3.45014	3.810255	4.17037	0.0139194	0.00116948	0.10247	0.0312127
chr1	24752817	24752917	46135	0	+	0.49	(0.476,0.515]	chr1	5764	68	INTRON	INTRON	CLIC4	ENSG00000169504.15	ENST00000488683.1:ENST00000497755.1:ENST00000489758.1:ENST00000374379.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	52	2	2.26034	3.8101450000000003	5.35995	0.0166235	7.54256e-4	0.110511	0.0251179
chr1	180480784	180480884	595615	0	-	0.5	(0.476,0.515]	chr1	71198	502	INTRON	INTRON	ACBD6	ENSG00000230124.8	ENST00000645415.1:ENST00000642319.1:ENST00000367595.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	52	2	2.26034	3.8101450000000003	5.35995	0.0166235	7.54256e-4	0.110511	0.0251179
chr11	68045502	68045602	4815703	0	+	0.49	(0.476,0.515]	chr11	448684	4	SS5_PROX	SS5_PROX:INTRON	TCIRG1	ENSG00000110719.10	ENST00000265686.8:ENST00000532635.5:ENST00000529364.1:ENST00000525724.5:ENST00000528981.5:ENST00000533005.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	56	2	2.49941	3.8100650000000003	5.12072	0.00811651	8.42139e-4	0.0766625	0.0263691
chr9	129894883	129894979	4360445	0	-	0.510417	(0.476,0.515]	chr9	400960	14	INTRON	INTRON	FNBP1	ENSG00000187239.17	ENST00000443566.6:ENST00000420781.5:ENST00000446176.7	protein_coding	protein_coding	protein_coding	protein_coding	2	56	2	2.49941	3.8100650000000003	5.12072	0.00811651	8.42139e-4	0.0766625	0.0263691
chr10	74051226	74051326	4455034	0	+	0.48	(0.476,0.515]	chr10	411397	77	INTRON	INTRON	VCL	ENSG00000035403.18	ENST00000623461.3:ENST00000372755.7:ENST00000624354.3:ENST00000211998.10:ENST00000478896.2:ENST00000461383.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	67	2	2.17347	3.81	5.44653	0.010447	2.03754e-4	0.0855102	0.0124395
chr1	100975957	100976057	175146	0	+	0.2	[0,0.28]	chr1	18985	12	UTR3	UTR3:EXON_MRNA	SLC30A7	ENSG00000162695.12	ENST00000370112.8:ENST00000357650.9	protein_coding	protein_coding	protein_coding	protein_coding	1	53	2	2.27119	3.80999	5.34879	0.070351	0.00157139	0.184298	0.0365659
chr9	93545940	93546038	4158998	0	+	0.489796	(0.476,0.515]	chr9	379186	21	INTRON	INTRON	FAM120A	ENSG00000048828.17	ENST00000277165.11:ENST00000427765.1	protein_coding	protein_coding	protein_coding	protein_coding	1	45	2	3.29074	3.809945	4.32915	0.0124637	0.00272563	0.0973643	0.0467523
chr10	22704037	22704136	4580399	0	-	0.343434	(0.32,0.35]	chr10	422046	95	INTRON	INTRON	PIP4K2A	ENSG00000150867.14	ENST00000376573.9:ENST00000545335.5	protein_coding	protein_coding	protein_coding	protein_coding	4	78	2	1.95408	3.80987	5.66566	0.0124054	6.06695e-4	0.0973643	0.0226059
chr2	200854223	200854313	1310000	0	-	0.488889	(0.476,0.515]	chr2	137011	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CLK1	ENSG00000013441.17	ENST00000321356.9:ENST00000461981.5:ENST00000473565.5:ENST00000432425.5:ENST00000409769.6:ENST00000409403.6:ENST00000434813.3:ENST00000496205.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	63	2	2.41328	3.8098650000000003	5.20645	0.00355364	0.00136049	0.0547657	0.0336321
chr14	94080618	94080718	5964520	0	-	0.57	(0.515,0.57]	chr14	566418	1	SS5_PROX	SS5_PROX:INTRON	DDX24	ENSG00000089737.18	ENST00000621632.5:ENST00000555762.1:ENST00000544005.5:ENST00000330836.9:ENST00000555054.1:ENST00000555324.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	60	2	2.20213	3.8098400000000003	5.41755	0.00853365	1.1703e-4	0.0780043	0.00929802
chr10	87866672	87866766	4482956	0	+	0.361702	(0.35,0.378]	chr10	412542	1	EXON_LNCRNA	EXON_LNCRNA:INTRON	PTEN	ENSG00000171862.12	ENST00000688308.1:ENST00000693560.1:ENST00000371953.8:ENST00000688158.1:ENST00000686459.1:ENST00000487939.1:ENST00000462694.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	66	2	2.35838	3.8098150000000004	5.26125	0.00468156	0.00191117	0.0631419	0.03947
chr3	50025010	50025110	1423810	0	+	0.35	(0.32,0.35]	chr3	149994	251	INTRON	INTRON	RBM6	ENSG00000004534.15	ENST00000442092.5:ENST00000443081.5:ENST00000419610.5:ENST00000441115.5:ENST00000422955.5:ENST00000454079.5:ENST00000266022.9:ENST00000425608.5:ENST00000434592.5:ENST00000464013.5:ENST00000483350.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	43	2	3.07975	3.8098150000000004	4.53988	0.0202178	0.00554235	0.109913	0.0674105
chr3	69758308	69758406	1448558	0	+	0.418367	(0.408,0.44]	chr3	152749	61	INTRON	INTRON	MITF	ENSG00000187098.18	ENST00000687384.1:ENST00000693031.1:ENST00000352241.9:ENST00000642352.1:ENST00000495741.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	115	2	3.29838	3.809655	4.32093	2.85924e-4	1.15245e-5	0.0155266	0.00250519
chr7	66138861	66138961	3324203	0	+	0.28	[0,0.28]	chr7	309118	41	INTRON	INTRON	CRCP	ENSG00000241258.7	ENST00000360415.7:ENST00000431089.6:ENST00000398684.6:ENST00000395326.8:ENST00000338592.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	53	2	2.64309	3.80964	4.97619	0.0308646	0.00535756	0.13151	0.0663076
chr1	95188654	95188754	167285	0	+	0.41	(0.408,0.44]	chr1	18138	144	INTRON	INTRON	TLCD4:TLCD4-RWDD3	ENSG00000152078.10:ENSG00000271092.5	ENST00000370203.9:ENST00000604534.5:ENST00000604203.1	protein_coding	protein_coding	protein_coding	protein_coding	2	56	2	2.16746	3.809495	5.45153	0.024436	1.89064e-4	0.12011	0.0119565
chr1	19163011	19163111	386323	0	-	0.35	(0.32,0.35]	chr1	45975	4	SS3_PROX	SS3_PROX:INTRON	UBR4	ENSG00000127481.15	ENST00000375254.8:ENST00000417040.1:ENST00000419533.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	47	2	2.23182	3.80933	5.38684	0.068598	5.01164e-4	0.184298	0.020217099999999998
chr11	12788128	12788228	4740717	0	+	0.49	(0.476,0.515]	chr11	439069	233	INTRON	INTRON	TEAD1	ENSG00000187079.20	ENST00000527636.7:ENST00000334310.10:ENST00000527575.6	protein_coding	protein_coding	protein_coding	protein_coding	1	41	2	2.7646	3.809195	4.85379	0.0162075	0.00234214	0.101453	0.0442989
chr2	62360524	62360623	790934	0	+	0.494949	(0.476,0.515]	chr2	88712	142	INTRON	INTRON	ENSG00000228541	ENSG00000228541.2	ENST00000689590.1:ENST00000687402.1:ENST00000687773.1	lncRNA	lncRNA	lncRNA	lncRNA	1	41	2	2.7646	3.809195	4.85379	0.0162075	0.00234214	0.101453	0.0442989
chr8	143590702	143590797	4083231	0	-	0.494737	(0.476,0.515]	chr8	371002	2	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	EEF1D	ENSG00000104529.19	ENST00000317198.10:ENST00000532400.1:ENST00000529272.5:ENST00000395119.7:ENST00000533833.5:ENST00000528610.5:ENST00000442189.6:ENST00000618139.4:ENST00000526838.5:ENST00000531621.5:ENST00000529007.5:ENST00000524624.5:ENST00000530191.6:ENST00000534377.6:ENST00000529516.6:ENST00000419152.7:ENST00000531218.6:ENST00000533494.6:ENST00000534380.6:ENST00000524397.5:ENST00000526786.5:ENST00000530848.5:ENST00000534232.5:ENST00000533749.5:ENST00000525695.5:ENST00000526340.5:ENST00000532543.1:ENST00000531931.1:ENST00000423316.7:ENST00000526710.1:ENST00000531281.1:ENST00000532596.5:ENST00000524883.1:ENST00000531670.5:ENST00000528519.1:ENST00000529832.5:ENST00000530306.5:ENST00000530545.5:ENST00000525261.5:ENST00000534804.5:ENST00000524900.1:ENST00000526135.5:ENST00000531953.5:ENST00000526133.1:ENST00000534475.5:ENST00000528303.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	41	2	2.7646	3.809195	4.85379	0.0162075	0.00234214	0.101453	0.0442989
chr12	57415362	57415462	5339102	0	-	0.33	(0.32,0.35]	chr12	510716	192	INTRON	INTRON	R3HDM2	ENSG00000179912.21	ENST00000402412.6:ENST00000347140.7:ENST00000634871.1:ENST00000448732.1	protein_coding	protein_coding	protein_coding	protein_coding	1	43	2	2.48693	3.8090800000000002	5.13123	0.0338094	0.00394704	0.146709	0.0548259
chr1	95121584	95121684	166608	0	+	0.57	(0.515,0.57]	chr1	18097	4	SS5_PROX	SS5_PROX:INTRON	TLCD4:TLCD4-RWDD3:ENSG00000231992	ENSG00000152078.10:ENSG00000271092.5:ENSG00000231992.1	ENST00000370203.9:ENST00000456991.5:ENST00000604534.5:ENST00000455656.1:ENST00000434207.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	3	57	2	2.45375	3.8089399999999998	5.16413	0.00273605	8.14815e-4	0.0483437	0.0263656
chr12	53189179	53189279	5141906	0	+	0.38	(0.378,0.408]	chr12	485094	17	UTR3	UTR3:EXON_MRNA	ZNF740	ENSG00000139651.11	ENST00000416904.5	protein_coding	protein_coding	protein_coding	protein_coding	1	43	2	2.84663	3.80884	4.77105	0.0133954	0.00330823	0.0946278	0.0527031
chr12	110304923	110305022	5226339	0	+	0.50505	(0.476,0.515]	chr12	495250	78	INTRON	INTRON	ATP2A2	ENSG00000174437.18	ENST00000308664.10:ENST00000539276.7:ENST00000377685.9:ENST00000548169.2:ENST00000550248.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	135	2	3.32077	3.80879	4.29681	3.02034e-5	2.44502e-5	0.0043803	0.00406051
chr12	132816139	132816239	5450092	0	-	0.5	(0.476,0.515]	chr12	522097	2	SS5_PROX	SS5_PROX:INTRON	GOLGA3	ENSG00000090615.16	ENST00000204726.9:ENST00000450791.8:ENST00000688114.1:ENST00000685283.1:ENST00000691696.1:ENST00000691636.1:ENST00000690897.1:ENST00000456883.7:ENST00000545875.4:ENST00000688251.1:ENST00000692951.1:ENST00000686751.1:ENST00000685580.1:ENST00000687165.1:ENST00000692384.1:ENST00000685120.1:ENST00000689813.1:ENST00000693112.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	86	2	3.41728	3.808705	4.20013	0.00165726	2.43832e-5	0.0369207	0.00386122
chr4	98370542	98370642	2001954	0	+	0.44	(0.408,0.44]	chr4	199710	176	INTRON	INTRON	RAP1GDS1	ENSG00000138698.15	ENST00000408927.8:ENST00000509011.5:ENST00000380158.8:ENST00000264572.11:ENST00000505378.5:ENST00000508213.5:ENST00000512857.5:ENST00000511379.5:ENST00000514122.5:ENST00000453712.6:ENST00000511212.5:ENST00000510870.5:ENST00000507303.5:ENST00000408900.7:ENST00000339360.9:ENST00000503745.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	62	2	2.17784	3.8086200000000003	5.4394	0.00916282	6.50925e-4	0.0855292	0.0232863
chr12	118030781	118030881	5234258	0	+	0.48	(0.476,0.515]	chr12	496557	2	SS3_PROX	SS3_PROX:INTRON	RFC5	ENSG00000111445.14	ENST00000454402.7:ENST00000392542.6:ENST00000543153.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	85	2	3.78212	3.8086149999999996	3.83511	2.63754e-4	2.36145e-4	0.0149561	0.0136195
chr15	64546146	64546246	6044945	0	+	0.35	(0.32,0.35]	chr15	575696	432	INTRON	INTRON	ZNF609	ENSG00000180357.10	ENST00000326648.5:ENST00000558680.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	62	2	2.1362	3.808515	5.48083	0.0291083	3.35843e-4	0.128029	0.0162819
chr20	57516526	57516622	7359191	0	-	0.34375	(0.32,0.35]	chr20	750466	3	INTRON	INTRON	CTCFL	ENSG00000124092.13	ENST00000423479.7:ENST00000429804.7:ENST00000609232.5:ENST00000608263.5:ENST00000243914.8:ENST00000371196.6:ENST00000433949.7:ENST00000502686.6:ENST00000422109.6:ENST00000426658.6:ENST00000608440.5:ENST00000422869.6:ENST00000608425.5:ENST00000539382.5:ENST00000608903.5:ENST00000432255.6:ENST00000608108.1:ENST00000608858.5:ENST00000607923.5:ENST00000608720.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	62	2	2.1362	3.808515	5.48083	0.0291083	3.35843e-4	0.128029	0.0162819
chr12	62491415	62491515	5151409	0	+	0.27	[0,0.28]	chr12	487471	9	INTRON	INTRON	MON2	ENSG00000061987.16	ENST00000641654.1:ENST00000546600.5:ENST00000393630.8:ENST00000549378.5:ENST00000547095.5:ENST00000552738.5:ENST00000393629.6:ENST00000552115.5:ENST00000549286.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	48	2	2.8569	3.8082700000000003	4.75964	0.0232081	0.013822	0.118148	0.10247
chr6	36453974	36454074	2854027	0	+	0.27	[0,0.28]	chr6	269712	9	INTRON	INTRON	KCTD20	ENSG00000112078.14	ENST00000536244.5:ENST00000373731.7:ENST00000483557.5:ENST00000474988.5:ENST00000498267.5:ENST00000481911.5:ENST00000449081.6:ENST00000265344.8:ENST00000460983.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	48	2	2.8569	3.8082700000000003	4.75964	0.0232081	0.013822	0.118148	0.10247
chr7	64926375	64926472	3321323	0	+	0.185567	[0,0.28]	chr7	308800	21	INTRON	INTRON	ZNF273	ENSG00000198039.12	ENST00000527278.5:ENST00000476120.2:ENST00000395375.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	48	2	2.8569	3.8082700000000003	4.75964	0.0232081	0.013822	0.118148	0.10247
chr2	61385919	61386018	1129698	0	-	0.454545	(0.44,0.476]	chr2	121474	22	INTRON	INTRON	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000453133.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	62	2	2.08211	3.80825	5.53439	0.0130715	4.05863e-4	0.0996047	0.0185763
chr18	62240382	62240481	6921838	0	+	0.383838	(0.378,0.408]	chr18	685032	51	INTRON	INTRON	RELCH	ENSG00000134444.15	ENST00000644646.2:ENST00000256858.10:ENST00000398130.6:ENST00000587725.5:ENST00000591227.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:processed_transcript	2	53	2	2.61188	3.8082350000000003	5.00459	0.0047055	0.00371142	0.0631419	0.0535094
chr17	50996396	50996480	6795743	0	-	0.535714	(0.515,0.57]	chr17	670906	3	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	SPAG9	ENSG00000008294.22	ENST00000262013.12:ENST00000510283.5:ENST00000505279.5:ENST00000357122.8:ENST00000514613.5:ENST00000505173.5:ENST00000513827.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	39	2	3.53085	3.808115	4.08538	0.0253843	6.59951e-4	0.12011	0.0232396
chr16	331164	331263	6426641	0	-	0.272727	[0,0.28]	chr16	617500	161	INTRON	INTRON	AXIN1	ENSG00000103126.15	ENST00000262320.8:ENST00000461023.5:ENST00000354866.7:ENST00000481769.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	48	2	2.5055	3.8079150000000004	5.11033	0.0359431	0.00991388	0.152322	0.0838372
chr2	135083859	135083958	872985	0	+	0.323232	(0.32,0.35]	chr2	97740	212	INTRON	INTRON	RAB3GAP1	ENSG00000115839.19	ENST00000539493.3:ENST00000688088.1:ENST00000693554.1:ENST00000690785.1:ENST00000689880.1:ENST00000264158.13:ENST00000690208.1:ENST00000691478.1:ENST00000686114.1:ENST00000685967.1:ENST00000442034.5:ENST00000687199.1:ENST00000691339.1:ENST00000688182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	62	2	2.09005	3.807835	5.52562	0.0330483	2.76065e-4	0.133816	0.0147997
chr20	31672025	31672124	7324862	0	-	0.373737	(0.35,0.378]	chr20	745990	45	INTRON	INTRON	BCL2L1	ENSG00000171552.14	ENST00000376055.9:ENST00000376062.6:ENST00000307677.5:ENST00000420488.6:ENST00000439267.2:ENST00000678563.1:ENST00000456404.6:ENST00000676942.1:ENST00000676582.1:ENST00000434194.2:ENST00000677194.1:ENST00000678671.1:ENST00000677494.1:ENST00000422920.2:ENST00000450273.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	41	2	2.57049	3.807805	5.04512	0.0262669	0.00393262	0.133676	0.0548259
chr10	68463586	68463684	4639685	0	-	0.489796	(0.476,0.515]	chr10	426716	40	INTRON	INTRON	DNA2	ENSG00000138346.15	ENST00000358410.8:ENST00000551118.6:ENST00000399179.6:ENST00000399180.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	62	2	2.20789	3.80779	5.40769	0.00820497	6.23078e-4	0.081115	0.0229151
chr7	152348435	152348535	3680417	0	-	0.53	(0.515,0.57]	chr7	341654	38	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000682301.1:ENST00000452749.2:ENST00000680867.1:ENST00000683800.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	53	2	1.79136	3.80774	5.82412	0.0638444	1.29371e-5	0.177811	0.00266147
chr12	53464397	53464467	5143018	0	+	0.414286	(0.408,0.44]	chr12	485418	3	SS3_PROX	SS3_PROX:INTRON	PCBP2	ENSG00000197111.16	ENST00000546463.6:ENST00000437231.5:ENST00000447282.5:ENST00000359282.9:ENST00000549863.5:ENST00000359462.9:ENST00000552296.6:ENST00000552819.5:ENST00000455667.7:ENST00000439930.7:ENST00000548933.5:ENST00000546652.6:ENST00000562264.5:ENST00000550585.5:ENST00000547987.2:ENST00000553064.6:ENST00000547859.2:ENST00000549272.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	81	2	2.17577	3.807585	5.4394	0.00269594	6.50925e-4	0.0479115	0.0232863
chr10	63394467	63394567	4634676	0	-	0.32	(0.28,0.32]	chr10	426236	136	INTRON	INTRON	JMJD1C	ENSG00000171988.20	ENST00000399262.7:ENST00000633035.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	45	2	3.02632	3.807535	4.58875	0.0230574	0.0071944	0.118056	0.0756118
chr12	70288057	70288156	5166881	0	+	0.282828	(0.28,0.32]	chr12	489387	21	INTRON	INTRON	CNOT2	ENSG00000111596.14	ENST00000547780.5:ENST00000418359.7:ENST00000552319.5:ENST00000550160.5:ENST00000551661.5:ENST00000551132.5:ENST00000553078.5:ENST00000548021.5:ENST00000550641.6:ENST00000229195.8:ENST00000552915.5:ENST00000549443.5:ENST00000548741.5:ENST00000552483.5:ENST00000552422.5:ENST00000547321.5:ENST00000553020.5:ENST00000548159.5:ENST00000549750.5:ENST00000551043.5:ENST00000548599.5:ENST00000550194.5:ENST00000551873.5:ENST00000547867.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	45	2	3.02632	3.807535	4.58875	0.0230574	0.0071944	0.118056	0.0756118
chr2	176324259	176324357	925767	0	+	0.316327	(0.28,0.32]	chr2	101694	4	INTRON	INTRON	MTX2	ENSG00000128654.14	ENST00000420864.5:ENST00000249442.11:ENST00000423461.6:ENST00000443241.5:ENST00000452865.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	45	2	3.02632	3.807535	4.58875	0.0230574	0.0071944	0.118056	0.0756118
chr7	44475333	44475432	3528136	0	-	0.282828	(0.28,0.32]	chr7	328981	35	INTRON	INTRON	NUDCD3	ENSG00000015676.18	ENST00000355451.8:ENST00000460110.5:ENST00000464812.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	60	2	2.51426	3.807475	5.10069	0.00781326	0.00610574	0.0788246	0.0676501
chr17	64653957	64654056	6817054	0	-	0.383838	(0.378,0.408]	chr17	673955	470	INTRON	INTRON	SMURF2	ENSG00000108854.16	ENST00000262435.14:ENST00000582081.5:ENST00000578386.5:ENST00000585301.1:ENST00000578200.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	40	2	3.1136	3.80708	4.50056	0.015974	0.00443339	0.101453	0.061054
chr1	180812586	180812685	271407	0	+	0.40404	(0.378,0.408]	chr1	31648	7	INTRON	INTRON	XPR1	ENSG00000143324.14	ENST00000367590.9:ENST00000367589.3	protein_coding	protein_coding	protein_coding	protein_coding	2	88	2	3.64419	3.8069800000000003	3.96977	7.25777e-4	9.19167e-5	0.0247646	0.00801007
chr15	52031069	52031168	6029141	0	+	0.484848	(0.476,0.515]	chr15	574427	28	INTRON	INTRON	MAPK6	ENSG00000069956.14	ENST00000560802.1:ENST00000691380.1:ENST00000558063.5:ENST00000560254.1:ENST00000681888.1:ENST00000261845.7:ENST00000680066.1:ENST00000680777.1:ENST00000558100.1:ENST00000680652.1:ENST00000558841.1:ENST00000558891.1:ENST00000560774.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	55	2	2.21677	3.8069300000000004	5.39709	0.0207026	2.55871e-4	0.110999	0.0142249
chr7	157240494	157240594	3454979	0	+	0.5	(0.476,0.515]	chr7	323002	88	INTRON	INTRON	UBE3C	ENSG00000009335.18	ENST00000348165.10:ENST00000470408.5:ENST00000494532.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	55	2	2.21677	3.8069300000000004	5.39709	0.0207026	2.55871e-4	0.110999	0.0142249
chr1	222502997	222503093	641520	0	-	0.479167	(0.476,0.515]	chr1	75677	11	INTRON	INTRON	ENSG00000276997	ENSG00000276997.4	ENST00000613697.1:ENST00000619187.4:ENST00000620399.1:ENST00000617276.1	lncRNA	lncRNA	lncRNA	lncRNA	2	55	2	2.26789	3.80689	5.34589	0.0176567	3.224e-4	0.105233	0.0159645
chr12	45776728	45776828	5123187	0	+	0.48	(0.476,0.515]	chr12	483307	5	INTRON	INTRON	ARID2	ENSG00000189079.17	ENST00000334344.11:ENST00000422737.6	protein_coding	protein_coding	protein_coding	protein_coding	2	55	2	2.26789	3.80689	5.34589	0.0176567	3.224e-4	0.105233	0.0159645
chr2	171145151	171145251	1263942	0	-	0.5	(0.476,0.515]	chr2	133921	269	INTRON	INTRON	TLK1	ENSG00000198586.14	ENST00000431350.7:ENST00000360843.7:ENST00000359766.7:ENST00000521943.5:ENST00000409443.6:ENST00000413010.5:ENST00000470340.1:ENST00000466220.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	55	2	2.26789	3.80689	5.34589	0.0176567	3.224e-4	0.105233	0.0159645
chr2	242160321	242160412	1057463	0	+	0.384615	(0.378,0.408]	chr2	112776	5	EXON_LNCRNA	EXON_LNCRNA:INTRON	LINC01881	ENSG00000220804.10	ENST00000692555.1:ENST00000682782.1:ENST00000683938.1:ENST00000682139.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	4	80	2	1.95026	3.80688	5.6635	0.0138007	7.77533e-5	0.095051	0.00735438
chr5	113568945	113569044	2454431	0	+	0.30303	(0.28,0.32]	chr5	235257	7	INTRON	INTRON	YTHDC2	ENSG00000047188.16	ENST00000161863.9:ENST00000506333.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	45	2	2.46018	3.8068799999999996	5.15358	0.0375904	0.0052282	0.156054	0.0633615
chr7	38752912	38753011	3521364	0	-	0.30303	(0.28,0.32]	chr7	328389	2	INTRON	INTRON	VPS41	ENSG00000006715.16	ENST00000310301.9:ENST00000395969.6	protein_coding	protein_coding	protein_coding	protein_coding	1	45	2	2.46018	3.8068799999999996	5.15358	0.0375904	0.0052282	0.156054	0.0633615
chr10	3091123	3091222	4381765	0	+	0.484848	(0.476,0.515]	chr10	404062	68	INTRON	INTRON	PFKP	ENSG00000067057.18	ENST00000607886.5:ENST00000381125.9:ENST00000381075.7:ENST00000678206.1:ENST00000678089.1:ENST00000676796.1:ENST00000421751.1:ENST00000407806.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	42	2	2.99852	3.806855	4.61519	0.0077575	0.00528365	0.0757402	0.0656295
chr2	189458159	189458252	952794	0	+	0.505376	(0.476,0.515]	chr2	103659	4	INTRON	INTRON	WDR75	ENSG00000115368.10	ENST00000436347.5:ENST00000314761.9:ENST00000427960.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	42	2	2.99852	3.806855	4.61519	0.0077575	0.00528365	0.0757402	0.0656295
chr21	31662034	31662134	7395725	0	+	0.48	(0.476,0.515]	chr21	753288	3	SS5_PROX	SS5_PROX:INTRON	SOD1	ENSG00000142168.15	ENST00000389995.4:ENST00000270142.11:ENST00000476106.5:ENST00000470944.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	42	2	2.99852	3.806855	4.61519	0.0077575	0.00528365	0.0757402	0.0656295
chrX	136915135	136915233	7727518	0	+	0.489796	(0.476,0.515]	chrX	790760	5	INTRON	INTRON	TM9SF5P	ENSG00000234062.9	ENST00000650669.2:ENST00000687469.1:ENST00000431464.6:ENST00000685550.1:ENST00000685929.1:ENST00000424306.5:ENST00000687978.1:ENST00000688713.1:ENST00000693626.1:ENST00000686432.1:ENST00000693698.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	1	42	2	2.99852	3.806855	4.61519	0.0077575	0.00528365	0.0757402	0.0656295
chr1	231366212	231366311	655692	0	-	0.343434	(0.32,0.35]	chr1	77782	26	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	EGLN1:ENSG00000287856	ENSG00000135766.9:ENSG00000287856.1	ENST00000667629.1:ENST00000366641.4:ENST00000653908.1:ENST00000653198.1:ENST00000658954.1:ENST00000670301.1:ENST00000662216.1:ENST00000654803.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	42	2	2.78073	3.8068	4.83287	0.01481	0.0095071	0.106702	0.0817766
chr2	201152244	201152343	981911	0	+	0.393939	(0.378,0.408]	chr2	105433	20	INTRON	INTRON	CFLAR	ENSG00000003402.21	ENST00000443227.5:ENST00000309955.8:ENST00000341582.10:ENST00000342795.9:ENST00000423241.6:ENST00000439154.6:ENST00000457277.5:ENST00000479953.6:ENST00000474842.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	44	2	3.00568	3.806695	4.60771	0.00811866	0.00567576	0.0766625	0.0678837
chr12	111478569	111478669	5411999	0	-	0.37	(0.35,0.378]	chr12	516832	1	SS5_PROX	SS5_PROX:INTRON	ATXN2	ENSG00000204842.18	ENST00000642389.2:ENST00000608853.5:ENST00000672613.1:ENST00000673436.1:ENST00000643669.2:ENST00000389154.7:ENST00000616825.4:ENST00000389153.10:ENST00000550104.5:ENST00000483311.6:ENST00000672335.1:ENST00000492467.6:ENST00000673557.1:ENST00000673283.1:ENST00000673273.1:ENST00000673449.1:ENST00000535949.5:ENST00000542287.6:ENST00000643474.1:ENST00000643694.1:ENST00000645162.1:ENST00000551755.6:ENST00000644883.1:ENST00000647305.1:ENST00000495342.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	43	2	2.30249	3.8065350000000002	5.31058	0.0519726	0.00160599	0.176696	0.0364977
chr11	57303871	57303969	4952676	0	-	0.520408	(0.515,0.57]	chr11	464753	5	INTRON	INTRON	TNKS1BP1	ENSG00000149115.14	ENST00000528882.5:ENST00000358252.8:ENST00000532437.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	37	2	2.68833	3.8065300000000004	4.92473	0.0184931	0.00108255	0.108861	0.0300133
chr3	72998458	72998558	1451970	0	+	0.36	(0.35,0.378]	chr3	152950	3	SS5_PROX	SS5_PROX:INTRON	PPP4R2	ENSG00000163605.15	ENST00000482242.5:ENST00000356692.10:ENST00000470976.1:ENST00000488810.5:ENST00000495566.1:ENST00000476505.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	92	2	3.64252	3.8064600000000004	3.9704	8.02255e-4	1.01653e-4	0.0262199	0.00850967
chr1	9736442	9736542	374556	0	-	0.53	(0.515,0.57]	chr1	43722	4	SS3_PROX	SS3_PROX:INTRON	CLSTN1	ENSG00000171603.18	ENST00000377298.9:ENST00000650348.1:ENST00000361311.4:ENST00000435891.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	37	2	2.76354	3.80645	4.84936	0.0147344	0.00146032	0.0983813	0.0349875
chr16	18902627	18902726	6457871	0	-	0.525253	(0.515,0.57]	chr16	622891	22	INTRON	INTRON	SMG1	ENSG00000157106.18	ENST00000446231.7:ENST00000532700.6:ENST00000569122.1:ENST00000563836.1	protein_coding	protein_coding	protein_coding	protein_coding	1	37	2	2.76354	3.80645	4.84936	0.0147344	0.00146032	0.0983813	0.0349875
chr2	38855839	38855939	1100493	0	-	0.54	(0.515,0.57]	chr2	118118	1	SS5_PROX	SS5_PROX:INTRON	DHX57	ENSG00000163214.21	ENST00000457308.6:ENST00000622155.4:ENST00000620517.4:ENST00000474104.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	37	2	2.76354	3.80645	4.84936	0.0147344	0.00146032	0.0983813	0.0349875
chr5	458425	458525	2313223	0	+	0.52	(0.515,0.57]	chr5	223778	4	SS5_PROX	SS5_PROX:INTRON	EXOC3	ENSG00000180104.16	ENST00000512944.6:ENST00000515601.6:ENST00000315013.9:ENST00000503889.2:ENST00000510028.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	37	2	2.76354	3.80645	4.84936	0.0147344	0.00146032	0.0983813	0.0349875
chr1	61453411	61453511	131127	0	+	0.29	(0.28,0.32]	chr1	14879	95	INTRON	INTRON	NFIA	ENSG00000162599.17	ENST00000371191.5:ENST00000664495.1:ENST00000407417.7:ENST00000371189.8:ENST00000670151.1:ENST00000664149.1:ENST00000662015.1:ENST00000403491.8:ENST00000371187.7:ENST00000485903.6:ENST00000371185.6:ENST00000371184.6:ENST00000663597.1:ENST00000657234.1:ENST00000655770.1:ENST00000357977.5:ENST00000493627.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	49	2	2.2609	3.806395	5.35189	0.0671429	8.52844e-4	0.183051	0.0264928
chr7	140121128	140121228	3659643	0	-	0.31	(0.28,0.32]	chr7	339715	2	INTRON	INTRON	KDM7A	ENSG00000006459.11	ENST00000397560.7	protein_coding	protein_coding	protein_coding	protein_coding	1	49	2	2.2609	3.806395	5.35189	0.0671429	8.52844e-4	0.183051	0.0264928
chr6	90586463	90586563	3162791	0	-	0.42	(0.408,0.44]	chr6	294986	3	SS5_PROX	SS5_PROX:INTRON	MAP3K7	ENSG00000135341.18	ENST00000369332.7:ENST00000369327.7:ENST00000369325.7:ENST00000369329.8	protein_coding	protein_coding	protein_coding	protein_coding	5	79	2	1.96132	3.80591	5.6505	0.00701866	2.70553e-4	0.0754576	0.0150813
chr9	100349472	100349572	4309142	0	-	0.27	[0,0.28]	chr9	395899	1	SS3_PROX	SS3_PROX:INTRON	TEX10	ENSG00000136891.14	ENST00000535814.5:ENST00000374902.9	protein_coding	protein_coding	protein_coding	protein_coding	2	65	2	2.45042	3.80586	5.1613	0.010819	0.00866441	0.0920575	0.0787025
chr2	159735678	159735778	899719	0	+	0.3	(0.28,0.32]	chr2	99533	12	INTRON	INTRON	MARCHF7	ENSG00000136536.15	ENST00000539065.5:ENST00000259050.8:ENST00000409175.6:ENST00000421037.1:ENST00000473749.1:ENST00000409591.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	62	2	2.74418	3.805745	4.86731	0.0116253	0.00328589	0.0889104	0.0527031
chr17	44063300	44063400	6778361	0	-	0.34	(0.32,0.35]	chr17	668124	1	SS5_PROX	SS5_PROX:INTRON	LSM12	ENSG00000161654.10	ENST00000591247.6:ENST00000293406.8:ENST00000585388.2	protein_coding	protein_coding	protein_coding	protein_coding	1	46	2	2.37794	3.805605	5.23327	0.0498601	9.33826e-4	0.156383	0.0278746
chr5	134168323	134168419	2726268	0	-	0.375	(0.35,0.378]	chr5	256494	7	INTRON	INTRON	SKP1	ENSG00000113558.19	ENST00000353411.11:ENST00000522552.5:ENST00000521216.5:ENST00000517625.5:ENST00000523966.5:ENST00000522855.5:ENST00000328392.10:ENST00000519054.5:ENST00000519321.5:ENST00000520417.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	123	2	3.45464	3.805485	4.15633	9.07166e-5	7.52029e-5	0.00796627	0.00777227
chr15	27089900	27090000	5983342	0	+	0.35	(0.32,0.35]	chr15	569164	627	INTRON	INTRON	GABRG3	ENSG00000182256.13	ENST00000615808.5:ENST00000555083.5	protein_coding	protein_coding	protein_coding	protein_coding	3	68	2	2.18777	3.80541	5.42305	0.00951422	0.00149027	0.0863913	0.035
chr16	53080166	53080266	6350970	0	+	0.34	(0.32,0.35]	chr16	609666	247	INTRON	INTRON	CHD9	ENSG00000177200.18	ENST00000447540.6:ENST00000566029.5:ENST00000615216.4:ENST00000561869.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	42	2	2.84569	3.80535	4.76501	0.0121137	0.0114287	0.0962599	0.0886611
chr2	38362686	38362786	1099202	0	-	0.33	(0.32,0.35]	chr2	117880	32	INTRON	INTRON	ATL2	ENSG00000119787.14	ENST00000378954.9:ENST00000406122.5:ENST00000405384.6:ENST00000402054.5:ENST00000419554.6:ENST00000651368.1:ENST00000452935.6:ENST00000449130.5:ENST00000443098.5:ENST00000456736.5:ENST00000472097.1:ENST00000451483.1:ENST00000416222.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	42	2	2.84569	3.80535	4.76501	0.0121137	0.0114287	0.0962599	0.0886611
chr2	148049957	148050056	887039	0	+	0.323232	(0.32,0.35]	chr2	98619	52	INTRON	INTRON	MBD5	ENSG00000204406.14	ENST00000407073.5:ENST00000488372.5:ENST00000496158.5:ENST00000642680.2:ENST00000638130.1:ENST00000637308.1:ENST00000473478.5:ENST00000635796.1:ENST00000637997.1:ENST00000470063.5:ENST00000638043.2:ENST00000638090.1:ENST00000637445.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	42	2	2.84569	3.80535	4.76501	0.0121137	0.0114287	0.0962599	0.0886611
chr7	158870485	158870563	3456270	0	+	0.346154	(0.32,0.35]	chr7	323141	2	INTRON	INTRON	DYNC2I1	ENSG00000126870.16	ENST00000407559.8:ENST00000397143.3	protein_coding	protein_coding	protein_coding	protein_coding	1	42	2	2.84569	3.80535	4.76501	0.0121137	0.0114287	0.0962599	0.0886611
chr9	126864611	126864711	4199728	0	+	0.37	(0.35,0.378]	chr9	383341	5	INTRON	INTRON	ZBTB34	ENSG00000177125.6	ENST00000319119.5:ENST00000695642.1	protein_coding	protein_coding	protein_coding	protein_coding	1	45	2	2.94111	3.8052	4.66929	0.0104563	0.00541617	0.0855102	0.066545000000000007
chrX	53397609	53397708	7819927	0	-	0.353535	(0.35,0.378]	chrX	797703	6	INTRON	INTRON	SMC1A	ENSG00000072501.19	ENST00000375340.10:ENST00000322213.9:ENST00000675504.1:ENST00000674590.1	protein_coding	protein_coding	protein_coding	protein_coding	1	45	2	2.94111	3.8052	4.66929	0.0104563	0.00541617	0.0855102	0.066545000000000007
chr21	43133304	43133404	7412407	0	+	0.33	(0.32,0.35]	chr21	755396	234	INTRON	INTRON	ENSG00000286549	ENSG00000286549.1	ENST00000668861.1	lncRNA	lncRNA	lncRNA	lncRNA	1	42	2	2.71269	3.805185	4.89768	0.0181461	0.00793135	0.114853	0.076155
chr22	37873571	37873670	7511940	0	+	0.333333	(0.32,0.35]	chr22	767200	24	INTRON	INTRON	EIF3L	ENSG00000100129.18	ENST00000412331.6:ENST00000624234.3:ENST00000381683.10:ENST00000652021.1:ENST00000477256.5:ENST00000406934.5:ENST00000482600.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	42	2	2.71269	3.805185	4.89768	0.0181461	0.00793135	0.114853	0.076155
chr12	116207761	116207860	5424849	0	-	0.292929	(0.28,0.32]	chr12	518271	266	INTRON	INTRON	MED13L	ENSG00000123066.9	ENST00000281928.9:ENST00000650226.1:ENST00000548743.2:ENST00000647567.1:ENST00000551197.2	protein_coding	protein_coding	protein_coding	protein_coding	3	72	2	2.21798	3.805165	5.39235	0.00901091	0.0024844	0.0851009	0.0446195
chr4	159294784	159294883	2075432	0	+	0.515152	(0.476,0.515]	chr4	205235	118	INTRON	INTRON	RAPGEF2	ENSG00000109756.10	ENST00000644474.1:ENST00000691494.1:ENST00000505478.5:ENST00000504604.5:ENST00000644902.1:ENST00000511336.5:ENST00000510510.5:ENST00000264431.8:ENST00000514565.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	55	2	2.16377	3.8051500000000003	5.44653	0.0243026	2.03754e-4	0.12011	0.0124395
chr1	61188123	61188223	128453	0	+	0.6	(0.57,1]	chr1	14778	552	INTRON	INTRON	NFIA	ENSG00000162599.17	ENST00000371191.5:ENST00000664495.1:ENST00000476646.5:ENST00000407417.7:ENST00000479364.1:ENST00000371189.8:ENST00000670151.1:ENST00000664149.1:ENST00000662015.1:ENST00000403491.8:ENST00000371187.7:ENST00000485903.6:ENST00000371185.6:ENST00000371184.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	34	2	2.47993	3.8050699999999997	5.13021	0.007207	1.21664e-4	0.0756278	0.00992813
chr3	152372290	152372390	1536024	0	+	0.43	(0.408,0.44]	chr3	160003	367	INTRON	INTRON	MBNL1	ENSG00000152601.18	ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000495875.6:ENST00000324210.10:ENST00000493459.5:ENST00000459747.1:ENST00000460591.5:ENST00000545754.5:ENST00000357472.7:ENST00000324196.9:ENST00000498502.5:ENST00000463374.5:ENST00000485910.5:ENST00000465907.6:ENST00000492948.5:ENST00000485509.5:ENST00000464596.5	protein_coding	protein_coding	protein_coding	protein_coding	4	74	2	2.41796	3.80499	5.19202	0.0016671	0.0015483	0.0369207	0.0363194
chr16	70425469	70425568	6511329	0	-	0.383838	(0.378,0.408]	chr16	630693	25	INTRON	INTRON	ST3GAL2	ENSG00000157350.13	ENST00000342907.3:ENST00000566097.1:ENST00000567586.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	58	2	2.43657	3.80469	5.17281	0.0106733	7.27294e-4	0.0861859	0.0245647
chr3	38223611	38223711	1399135	0	+	0.46	(0.44,0.476]	chr3	146700	4	SS3_PROX	SS3_PROX:INTRON	OXSR1	ENSG00000172939.9	ENST00000446845.5:ENST00000311806.8:ENST00000426620.5:ENST00000483695.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	39	2	3.08591	3.8043050000000003	4.5227	0.0128818	0.00481262	0.0926667	0.0638089
chr11	481188	481287	4719216	0	+	0.454545	(0.44,0.476]	chr11	436026	7	INTRON	INTRON	PTDSS2	ENSG00000174915.12	ENST00000532614.5:ENST00000308020.6:ENST00000531520.5:ENST00000526878.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	63	2	2.46422	3.804	5.14378	0.00282908	0.00184943	0.0491595	0.0388609
chr7	152840068	152840167	3451332	0	+	0.40404	(0.378,0.408]	chr7	322567	146	INTRON	INTRON	ACTR3B	ENSG00000133627.18	ENST00000377776.7:ENST00000256001.13:ENST00000397282.2:ENST00000479402.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	55	2	2.86955	3.8039699999999996	4.73839	0.00837252	0.00159247	0.0774402	0.0367961
chr3	160417956	160418056	1544796	0	+	0.37	(0.35,0.378]	chr3	160725	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	SMC4	ENSG00000113810.16	ENST00000357388.8:ENST00000469762.5:ENST00000469858.5:ENST00000462787.5:ENST00000344722.5:ENST00000462668.5:ENST00000484799.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	65	2	2.11531	3.803945	5.49258	0.0119629	8.19894e-4	0.0962115	0.0264086
chr1	247311354	247311454	684253	0	-	0.46	(0.44,0.476]	chr1	80223	10	EXON_LNCRNA	EXON_LNCRNA:INTRON	ZNF496	ENSG00000162714.13	ENST00000294753.8:ENST00000462139.1:ENST00000682384.1:ENST00000461277.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	39	2	2.58033	3.80368	5.02703	0.0247511	0.00278015	0.131869	0.0469265
chr7	2028829	2028929	3464884	0	-	0.46	(0.44,0.476]	chr7	324024	138	INTRON	INTRON	MAD1L1	ENSG00000002822.16	ENST00000406869.5:ENST00000399654.6:ENST00000402746.5:ENST00000265854.12:ENST00000438959.5:ENST00000444373.6:ENST00000421113.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	39	2	2.58033	3.80368	5.02703	0.0247511	0.00278015	0.131869	0.0469265
chr5	177047518	177047617	2553184	0	+	0.484848	(0.476,0.515]	chr5	243788	26	INTRON	INTRON	ZNF346	ENSG00000113761.12	ENST00000512315.5:ENST00000358149.8:ENST00000506693.5:ENST00000503425.5:ENST00000508155.5:ENST00000511834.5:ENST00000503039.1:ENST00000513587.5:ENST00000504600.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	53	2	2.06491	3.8035049999999995	5.5421	0.0304733	3.56777e-4	0.143385	0.0175154
chr12	62326614	62326705	5150222	0	+	0.307692	(0.28,0.32]	chr12	487333	3	INTRON	INTRON	USP15	ENSG00000135655.16	ENST00000353364.7:ENST00000550632.5:ENST00000312635.10:ENST00000280377.10:ENST00000549237.5:ENST00000552997.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	52	2	3.08462	3.803475	4.52233	0.0129279	0.0078976	0.0990564	0.076155
chr2	75936271	75936371	817522	0	+	0.3	(0.28,0.32]	chr2	91391	634	INTRON	INTRON	ENSG00000287474	ENSG00000287474.1	ENST00000670606.1	lncRNA	lncRNA	lncRNA	lncRNA	1	52	2	3.08462	3.803475	4.52233	0.0129279	0.0078976	0.0990564	0.076155
chr7	23194302	23194402	3289755	0	+	0.3	(0.28,0.32]	chr7	305556	62	INTRON	INTRON	NUP42	ENSG00000136243.18	ENST00000485250.5:ENST00000438012.5:ENST00000258742.10:ENST00000487595.5:ENST00000413919.1:ENST00000437140.5:ENST00000486136.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	52	2	3.08462	3.803475	4.52233	0.0129279	0.0078976	0.0990564	0.076155
chr1	61133127	61133227	127903	0	+	0.31	(0.28,0.32]	chr1	14778	2	INTRON	INTRON	NFIA	ENSG00000162599.17	ENST00000371191.5:ENST00000664495.1:ENST00000476646.5:ENST00000407417.7:ENST00000479364.1:ENST00000371189.8:ENST00000670151.1:ENST00000664149.1:ENST00000662015.1:ENST00000403491.8:ENST00000371187.7:ENST00000485903.6:ENST00000371185.6:ENST00000371184.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	44	2	2.73945	3.8033799999999998	4.86731	0.017681	0.0116253	0.11319	0.0889104
chr11	117269519	117269619	4869806	0	+	0.54	(0.515,0.57]	chr11	454512	222	INTRON	INTRON	RNF214	ENSG00000167257.11	ENST00000300650.9:ENST00000531452.5:ENST00000531287.5:ENST00000530849.1	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	3.19178	3.8033799999999998	4.41498	0.0106866	0.00289534	0.0861859	0.0494641
chr12	100282442	100282542	5200666	0	+	0.53	(0.515,0.57]	chr12	492118	1	SS3_PROX	SS3_PROX:INTRON	SCYL2	ENSG00000136021.19	ENST00000549687.5:ENST00000360820.7:ENST00000548392.5:ENST00000635101.1:ENST00000550067.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	36	2	3.19178	3.8033799999999998	4.41498	0.0106866	0.00289534	0.0861859	0.0494641
chr16	48310285	48310385	6346416	0	+	0.32	(0.28,0.32]	chr16	609123	66	INTRON	INTRON	LONP2	ENSG00000102910.14	ENST00000285737.9:ENST00000535754.5:ENST00000416006.7:ENST00000566755.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	44	2	2.73945	3.8033799999999998	4.86731	0.017681	0.0116253	0.11319	0.0889104
chr16	58555050	58555150	6495607	0	-	0.54	(0.515,0.57]	chr16	628529	4	SS5_PROX	SS5_PROX:INTRON	CNOT1	ENSG00000125107.19	ENST00000317147.10:ENST00000569240.5:ENST00000567188.5:ENST00000441024.6:ENST00000569732.1:ENST00000562046.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	36	2	3.19178	3.8033799999999998	4.41498	0.0106866	0.00289534	0.0861859	0.0494641
chr7	129943591	129943690	3637880	0	-	0.50505	(0.476,0.515]	chr7	338230	60	INTRON	INTRON	UBE2H	ENSG00000186591.13	ENST00000355621.8:ENST00000473814.6:ENST00000496698.5:ENST00000472396.5:ENST00000480245.5:ENST00000490974.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	52	2	2.63396	3.803245	4.97253	0.00426634	0.00311573	0.0596808	0.0498063
chr14	100262866	100262966	5815043	0	+	0.4	(0.378,0.408]	chr14	551335	4	SS5_PROX	SS5_PROX:INTRON	YY1	ENSG00000100811.14	ENST00000262238.10:ENST00000553625.5:ENST00000554804.1:ENST00000651219.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	117	2	3.61929	3.8031449999999998	3.987	1.51115e-4	3.16433e-5	0.0112678	0.00449886
chr18	21625027	21625126	6879284	0	+	0.373737	(0.35,0.378]	chr18	681851	7	INTRON	INTRON	SNRPD1	ENSG00000167088.11	ENST00000300413.10:ENST00000579618.1:ENST00000582475.1	protein_coding	protein_coding	protein_coding	protein_coding	1	44	2	2.78212	3.802945	4.82377	0.0168532	0.00325499	0.103549	0.0524329
chr2	168881960	168882060	1259701	0	-	0.36	(0.35,0.378]	chr2	133387	42	INTRON	INTRON	SPC25	ENSG00000152253.9	ENST00000479309.6:ENST00000282074.7:ENST00000472216.2:ENST00000451987.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	44	2	2.78212	3.802945	4.82377	0.0168532	0.00325499	0.103549	0.0524329
chr20	43708000	43708098	7276473	0	+	0.397959	(0.378,0.408]	chr20	739765	23	INTRON	INTRON	MYBL2	ENSG00000101057.16	ENST00000396863.8:ENST00000217026.5	protein_coding	protein_coding	protein_coding	protein_coding	3	69	2	1.82258	3.80288	5.78318	0.0341279	4.21479e-5	0.135102	0.0052571
chr6	147827919	147828019	2992278	0	+	0.47	(0.44,0.476]	chr6	280177	905	INTRON	INTRON	ENSG00000227681	ENSG00000227681.5	ENST00000427015.1	lncRNA	lncRNA	lncRNA	lncRNA	1	41	2	2.60774	3.8027800000000003	4.99782	0.0255874	0.0013223	0.120269	0.0333932
chr4	77072293	77072393	2165912	0	-	0.47	(0.44,0.476]	chr4	213634	55	INTRON	INTRON	CCNI	ENSG00000118816.11	ENST00000237654.9:ENST00000511943.5:ENST00000505609.5:ENST00000513774.1:ENST00000507788.2:ENST00000515790.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	41	2	2.67572	3.8027	4.92968	0.0212064	0.00171443	0.113017	0.0381936
chr10	131978790	131978888	4715866	0	-	0.530612	(0.515,0.57]	chr10	435218	45	INTRON	INTRON	BNIP3	ENSG00000176171.12	ENST00000368636.9:ENST00000540159.4:ENST00000633835.2:ENST00000631806.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	47	2	2.62817	3.802695	4.97722	0.004048	0.00168681	0.0578376	0.0370386
chr1	5994473	5994571	4016	0	+	0.540816	(0.515,0.57]	chr1	805	13	INTRON	INTRON	KCNAB2	ENSG00000069424.16	ENST00000655548.1:ENST00000378111.6:ENST00000378097.6:ENST00000666163.1:ENST00000671676.1:ENST00000658883.1:ENST00000658691.1:ENST00000655748.1:ENST00000435937.6:ENST00000493807.2:ENST00000445501.6:ENST00000478098.5:ENST00000653262.1:ENST00000668706.1:ENST00000389632.9:ENST00000657222.1:ENST00000654144.1:ENST00000341524.6:ENST00000462676.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	37	2	2.60899	3.80267	4.99635	0.0232669	8.06602e-4	0.118148	0.0258804
chr1	179974294	179974394	267632	0	+	0.54	(0.515,0.57]	chr1	31299	49	INTRON	INTRON	CEP350	ENSG00000135837.16	ENST00000491495.2:ENST00000367607.8	protein_coding	protein_coding	protein_coding	protein_coding	1	37	2	2.60899	3.80267	4.99635	0.0232669	8.06602e-4	0.118148	0.0258804
chr19	875954	876040	7110572	0	-	0.534884	(0.515,0.57]	chr19	714082	1	INTRON	INTRON	MED16	ENSG00000175221.16	ENST00000395808.7:ENST00000312090.10:ENST00000325464.6:ENST00000607471.5:ENST00000606248.5:ENST00000586017.5:ENST00000592943.5:ENST00000606828.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	37	2	2.60899	3.80267	4.99635	0.0232669	8.06602e-4	0.118148	0.0258804
chr1	28532957	28533057	57452	0	+	0.56	(0.515,0.57]	chr1	7431	2	SS5_PROX	SS5_PROX:INTRON	RCC1	ENSG00000180198.17	ENST00000398958.6:ENST00000649185.1:ENST00000427469.5:ENST00000683442.1:ENST00000434290.6:ENST00000373833.10:ENST00000419074.5:ENST00000373832.5:ENST00000373831.7:ENST00000411533.5:ENST00000430407.1:ENST00000429051.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	36	2	2.56306	3.802655	5.04225	0.0247751	0.00131841	0.131869	0.0331539
chr4	73078341	73078441	2158985	0	-	0.53	(0.515,0.57]	chr4	212609	3	SS5_PROX	SS5_PROX:INTRON	ANKRD17	ENSG00000132466.20	ENST00000358602.9:ENST00000558247.5:ENST00000330838.10:ENST00000509867.6:ENST00000510127.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	36	2	2.56306	3.802655	5.04225	0.0247751	0.00131841	0.131869	0.0331539
chr5	179772811	179772908	2561447	0	+	0.515464	(0.515,0.57]	chr5	244983	12	INTRON	INTRON	MAML1	ENSG00000161021.13	ENST00000292599.4:ENST00000507385.1:ENST00000511027.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	36	2	2.56306	3.802655	5.04225	0.0247751	0.00131841	0.131869	0.0331539
chr19	14533832	14533932	7024969	0	+	0.37	(0.35,0.378]	chr19	698965	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	TECR	ENSG00000099797.15	ENST00000600076.5:ENST00000598298.5:ENST00000642961.1:ENST00000215567.10:ENST00000600083.5:ENST00000598987.5:ENST00000601652.5:ENST00000593637.5:ENST00000594807.5:ENST00000598333.5:ENST00000596953.5:ENST00000597607.5:ENST00000596164.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	65	2	2.07049	3.8026	5.53471	0.0140397	6.96925e-4	0.102801	0.024224
chr7	135663790	135663890	3429292	0	+	0.56	(0.515,0.57]	chr7	319866	8	INTRON	INTRON	STMP1	ENSG00000243317.8	ENST00000509448.5:ENST00000507606.3:ENST00000515197.2:ENST00000422968.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	47	2	2.32836	3.802435	5.27651	0.0126662	5.11033e-4	0.0982897	0.020816
chr10	96911942	96912042	4503768	0	+	0.55	(0.515,0.57]	chr10	414561	38	INTRON	INTRON	LCOR	ENSG00000196233.14	ENST00000676067.1:ENST00000676257.1:ENST00000676187.1:ENST00000675151.1:ENST00000675687.1:ENST00000675251.1:ENST00000676123.1:ENST00000371103.8:ENST00000675471.1:ENST00000421806.4:ENST00000675902.1:ENST00000540664.6:ENST00000676414.1:ENST00000675537.1:ENST00000675117.1:ENST00000675125.1:ENST00000356016.7:ENST00000371097.8:ENST00000676381.1:ENST00000674796.1:ENST00000674725.1:ENST00000675971.1:ENST00000676373.1:ENST00000493486.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	37	2	2.83501	3.8024250000000004	4.76984	0.0117686	0.00198034	0.0894475	0.0411469
chr16	16019219	16019319	6308458	0	+	0.53	(0.515,0.57]	chr16	603534	22	INTRON	INTRON	ABCC1	ENSG00000103222.20	ENST00000574224.2:ENST00000678422.1:ENST00000677164.1:ENST00000399408.7:ENST00000572882.3:ENST00000399410.8:ENST00000679043.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	37	2	2.83501	3.8024250000000004	4.76984	0.0117686	0.00198034	0.0894475	0.0411469
chr16	29610409	29610509	6471705	0	-	0.34	(0.32,0.35]	chr16	625301	156	INTRON	INTRON	ENSG00000288632	ENSG00000288632.1	ENST00000675579.1	lncRNA	lncRNA	lncRNA	lncRNA	3	68	2	1.97654	3.802245	5.62795	0.0199113	7.01392e-4	0.120668	0.024224
chr1	184934805	184934905	602656	0	-	0.48	(0.476,0.515]	chr1	71774	351	INTRON	INTRON	NIBAN1	ENSG00000135842.17	ENST00000367511.4	protein_coding	protein_coding	protein_coding	protein_coding	1	39	2	3.07422	3.802225	4.53023	0.0119748	0.00506023	0.0899583	0.0646039
chr16	70267996	70268083	6510269	0	-	0.494253	(0.476,0.515]	chr16	630560	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	AARS1	ENSG00000090861.17	ENST00000674963.1:ENST00000675643.1:ENST00000675917.1:ENST00000674691.1:ENST00000261772.13:ENST00000675569.1:ENST00000676209.1:ENST00000676211.1:ENST00000676040.1:ENST00000675953.1:ENST00000675691.1:ENST00000676004.1:ENST00000675270.1:ENST00000675403.1:ENST00000676212.1:ENST00000675045.1:ENST00000675035.1:ENST00000676168.1:ENST00000674652.1:ENST00000675133.1:ENST00000675120.1:ENST00000674811.1:ENST00000674512.1:ENST00000675853.1:ENST00000565361.3:ENST00000676247.1:ENST00000674848.1:ENST00000674962.1:ENST00000675371.1:ENST00000675986.1:ENST00000674768.1:ENST00000675297.1:ENST00000675751.1:ENST00000564359.6:ENST00000675338.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	39	2	3.07422	3.802225	4.53023	0.0119748	0.00506023	0.0899583	0.0646039
chr6	26882842	26882942	3071528	0	-	0.48	(0.476,0.515]	chr6	285527	1	SS5_PROX	SS5_PROX:INTRON	GUSBP2	ENSG00000241549.8	ENST00000479900.5:ENST00000463434.5:ENST00000492832.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	1	39	2	3.07422	3.802225	4.53023	0.0119748	0.00506023	0.0899583	0.0646039
chr1	2398317	2398416	3065	0	+	0.323232	(0.32,0.35]	chr1	604	7	INTRON	INTRON	RER1	ENSG00000157916.20	ENST00000378513.7:ENST00000378518.5:ENST00000605895.6:ENST00000306256.13:ENST00000378512.5:ENST00000443438.5:ENST00000488353.2	protein_coding	protein_coding	protein_coding	protein_coding	2	62	2	1.99307	3.802155	5.61124	0.04271	1.88018e-4	0.148082	0.011951
chr7	44580480	44580577	3528440	0	-	0.340206	(0.32,0.35]	chr7	329082	7	UTR3	UTR3:EXON_MRNA:INTRON	TMED4	ENSG00000158604.15	ENST00000289577.9:ENST00000457408.7:ENST00000481238.1:ENST00000477639.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	62	2	1.99307	3.802155	5.61124	0.04271	1.88018e-4	0.148082	0.011951
chr12	22662004	22662104	5095120	0	+	0.37	(0.35,0.378]	chr12	481256	4	INTRON	INTRON	ETNK1	ENSG00000139163.16	ENST00000671733.1:ENST00000266517.9:ENST00000538218.2:ENST00000673406.1:ENST00000673188.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	54	2	2.44701	3.8021200000000004	5.15723	0.00900997	0.00272706	0.0851009	0.0467523
chr7	73511651	73511750	3554994	0	-	0.363636	(0.35,0.378]	chr7	330813	4	INTRON	INTRON	BAZ1B	ENSG00000009954.11	ENST00000339594.9:ENST00000404251.1	protein_coding	protein_coding	protein_coding	protein_coding	2	54	2	2.44701	3.8021200000000004	5.15723	0.00900997	0.00272706	0.0851009	0.0467523
chr7	141745960	141746055	3440178	0	+	0.252632	[0,0.28]	chr7	320694	5	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	SSBP1	ENSG00000106028.11	ENST00000612337.4:ENST00000265304.11:ENST00000498107.5:ENST00000489378.5:ENST00000469123.5:ENST00000467681.5:ENST00000465582.5:ENST00000465167.1:ENST00000484178.5:ENST00000481508.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	270	2	2.83143	3.80208	4.77273	1.08113e-4	1.14716e-5	0.00879269	0.00268333
chr16	28157424	28157523	6467912	0	-	0.313131	(0.28,0.32]	chr16	624556	5	INTRON	INTRON	XPO6	ENSG00000169180.12	ENST00000304658.10:ENST00000565698.5:ENST00000574435.1:ENST00000569973.1:ENST00000573645.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	44	2	2.80157	3.80206	4.80255	0.0147132	0.0137406	0.106558	0.0949306
chr5	146477499	146477597	2515813	0	+	0.316327	(0.28,0.32]	chr5	240338	56	INTRON	INTRON	TCERG1	ENSG00000113649.13	ENST00000507175.5:ENST00000296702.9:ENST00000679501.2:ENST00000394421.7:ENST00000549332.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	44	2	2.80157	3.80206	4.80255	0.0147132	0.0137406	0.106558	0.0949306
chr19	17773838	17773938	7031660	0	+	0.37	(0.35,0.378]	chr19	700440	2	SS3_PROX	SS3_PROX:INTRON	FCHO1	ENSG00000130475.15	ENST00000252771.11:ENST00000594202.5:ENST00000600676.5:ENST00000596536.6:ENST00000595023.5:ENST00000595033.5:ENST00000596951.5:ENST00000597512.1:ENST00000597076.5:ENST00000600393.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	54	2	2.34278	3.802015	5.26125	0.0129593	0.00191117	0.0991015	0.03947
chr17	44057713	44057813	6778305	0	-	0.32	(0.28,0.32]	chr17	668123	171	INTRON	INTRON	LSM12	ENSG00000161654.10	ENST00000591247.6:ENST00000293406.8:ENST00000585388.2	protein_coding	protein_coding	protein_coding	protein_coding	1	44	2	2.67453	3.80191	4.92929	0.021289	0.0098607	0.123318	0.0838128
chr5	109809475	109809575	2450220	0	+	0.3	(0.28,0.32]	chr5	234656	48	INTRON	INTRON	MAN2A1	ENSG00000112893.10	ENST00000261483.5:ENST00000502261.5:ENST00000508043.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	44	2	2.67453	3.80191	4.92929	0.021289	0.0098607	0.123318	0.0838128
chr12	104320337	104320421	5210352	0	+	0.547619	(0.515,0.57]	chr12	493248	4	INTRON	INTRON	TXNRD1	ENSG00000198431.17	ENST00000525566.6:ENST00000503506.6:ENST00000526691.5:ENST00000526390.5:ENST00000529546.5:ENST00000529751.1:ENST00000524698.5:ENST00000527688.5:ENST00000526950.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	39	2	2.23915	3.801775	5.3644	0.0596178	1.52226e-4	0.16883600000000001	0.0106137
chr16	224843	224942	6426144	0	-	0.424242	(0.408,0.44]	chr16	617444	37	INTRON	INTRON	LUC7L	ENSG00000007392.17	ENST00000337351.8:ENST00000426094.5:ENST00000397783.5:ENST00000629543.2:ENST00000490762.5:ENST00000293872.13:ENST00000419516.5:ENST00000397780.5:ENST00000418978.5:ENST00000430864.5:ENST00000443357.5:ENST00000494366.5:ENST00000469109.1:ENST00000428363.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	39	2	3.08738	3.80171	4.51604	0.0137419	0.00478231	0.0949306	0.0636201
chr10	3144566	3144666	4542783	0	-	0.48	(0.476,0.515]	chr10	419386	2	SS3_PROX	SS3_PROX:INTRON	PITRM1	ENSG00000107959.17	ENST00000224949.9:ENST00000678811.1:ENST00000464395.1:ENST00000380989.6:ENST00000451104.6:ENST00000677384.1:ENST00000679309.1:ENST00000678403.1:ENST00000676719.1:ENST00000380994.6:ENST00000678855.1:ENST00000678436.1:ENST00000677817.1:ENST00000677305.1:ENST00000678986.1:ENST00000677001.1:ENST00000678987.1:ENST00000678601.1:ENST00000676953.1:ENST00000676519.1:ENST00000678050.1:ENST00000678370.1:ENST00000677922.1:ENST00000678441.1:ENST00000679134.1:ENST00000677598.1:ENST00000678539.1:ENST00000451454.5:ENST00000424714.1:ENST00000679210.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	39	2	2.56868	3.8016699999999997	5.03466	0.0256676	0.00252065	0.133676	0.0446195
chr12	2962452	2962552	5066560	0	+	0.5	(0.476,0.515]	chr12	478187	17	INTRON	INTRON	TEAD4	ENSG00000197905.10	ENST00000358409.7:ENST00000359864.8:ENST00000540314.2:ENST00000536826.2:ENST00000543035.6:ENST00000397122.6:ENST00000443986.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	39	2	2.56868	3.8016699999999997	5.03466	0.0256676	0.00252065	0.133676	0.0446195
chr4	139164476	139164576	2247220	0	-	0.49	(0.476,0.515]	chr4	219601	246	INTRON	INTRON	ELF2	ENSG00000109381.21	ENST00000394235.6:ENST00000686138.1:ENST00000511184.5:ENST00000511006.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	55	2	2.10874	3.80154	5.49434	0.0285608	1.62782e-4	0.12666	0.0109774
chr6	147666104	147666204	2990656	0	+	0.55	(0.515,0.57]	chr6	280159	49	INTRON	INTRON	ENSG00000227681	ENSG00000227681.5	ENST00000427015.1:ENST00000432506.5	lncRNA	lncRNA	lncRNA	lncRNA	2	50	2	2.53845	3.80152	5.06459	0.00632226	6.03964e-4	0.0687526	0.0223465
chr1	246488362	246488462	680534	0	-	0.51	(0.476,0.515]	chr1	79781	47	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000490107.6:ENST00000462422.5:ENST00000403792.7:ENST00000470863.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	55	2	2.365	3.801345	5.23769	0.0128901	5.17244e-4	0.0926667	0.0203753
chr6	136287039	136287137	3231100	0	-	0.55102	(0.515,0.57]	chr6	300408	40	INTRON	INTRON	BCLAF1	ENSG00000029363.17	ENST00000640069.1:ENST00000531224.6:ENST00000353331.8:ENST00000527536.5:ENST00000527613.5:ENST00000530767.5:ENST00000527759.5:ENST00000534269.5:ENST00000532384.5:ENST00000530429.5:ENST00000628517.2:ENST00000529826.5:ENST00000528229.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	49	2	2.03361	3.8013399999999997	5.56907	0.0325854	1.36543e-4	0.145164	0.0106702
chr4	10101517	10101615	2107272	0	-	0.571429	(0.57,1]	chr4	208480	20	INTRON	INTRON	WDR1	ENSG00000071127.17	ENST00000499869.7:ENST00000382451.6:ENST00000382452.6:ENST00000502702.5:ENST00000508079.1:ENST00000264785.11:ENST00000505851.5:ENST00000514319.5:ENST00000515018.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	62	2	3.63273	3.80104	3.96935	4.27649e-5	1.27941e-5	0.00555805	0.00265999
chr1	41033284	41033383	428714	0	-	0.424242	(0.408,0.44]	chr1	52145	42	INTRON	INTRON	SCMH1	ENSG00000010803.17	ENST00000695335.1:ENST00000372596.5:ENST00000372597.5:ENST00000337495.9:ENST00000372595.5:ENST00000326197.11:ENST00000472037.5:ENST00000695336.1:ENST00000456518.3:ENST00000460215.5:ENST00000498793.5:ENST00000695337.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	39	2	2.58179	3.8010349999999997	5.02028	0.024638	0.00303216	0.131869	0.0493883
chr2	8836173	8836272	1062025	0	-	0.424242	(0.408,0.44]	chr2	113298	87	INTRON	INTRON	KIDINS220	ENSG00000134313.17	ENST00000569008.2:ENST00000689369.1:ENST00000693394.1:ENST00000689852.1:ENST00000693432.1:ENST00000256707.8:ENST00000687912.1:ENST00000685097.1:ENST00000473731.5:ENST00000687894.1:ENST00000691030.1:ENST00000686906.1:ENST00000488729.5:ENST00000489024.5:ENST00000459813.2:ENST00000692419.1:ENST00000689531.1:ENST00000686179.1:ENST00000692889.1:ENST00000687240.1:ENST00000690607.1:ENST00000319688.5:ENST00000689114.1:ENST00000685274.1:ENST00000693366.1:ENST00000693249.1:ENST00000685083.1:ENST00000496725.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	39	2	2.58179	3.8010349999999997	5.02028	0.024638	0.00303216	0.131869	0.0493883
chr4	87095069	87095169	1995409	0	+	0.41	(0.408,0.44]	chr4	199081	1	SS5_PROX	SS5_PROX:INTRON	AFF1	ENSG00000172493.23	ENST00000395146.9:ENST00000674009.1:ENST00000503477.5:ENST00000544085.6:ENST00000307808.10:ENST00000511722.5:ENST00000514970.2	protein_coding	protein_coding	protein_coding	protein_coding	1	39	2	2.58179	3.8010349999999997	5.02028	0.024638	0.00303216	0.131869	0.0493883
chr19	8392933	8393032	7010371	0	+	0.525253	(0.515,0.57]	chr19	696072	21	INTRON	INTRON	RAB11B	ENSG00000185236.12	ENST00000600719.5:ENST00000328024.11:ENST00000598706.1:ENST00000601897.1:ENST00000594216.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	51	2	2.67733	3.80103	4.92473	0.00366712	0.00108255	0.0535094	0.0300133
chr10	3134882	3134982	4382227	0	+	0.41	(0.408,0.44]	chr10	404174	3	SS5_PROX	SS5_PROX:INTRON	PFKP	ENSG00000067057.18	ENST00000381125.9:ENST00000381075.7:ENST00000678206.1:ENST00000678089.1:ENST00000676796.1:ENST00000415005.6:ENST00000381072.5:ENST00000433193.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	42	2	2.89795	3.801025	4.7041	0.0110735	0.00381677	0.0873897	0.0562562
chr10	50527214	50527314	4619722	0	-	0.41	(0.408,0.44]	chr10	425452	69	INTRON	INTRON	SGMS1	ENSG00000198964.14	ENST00000429490.5:ENST00000361781.7:ENST00000619438.4:ENST00000609445.5:ENST00000608287.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	42	2	2.89795	3.801025	4.7041	0.0110735	0.00381677	0.0873897	0.0562562
chr9	130849776	130849876	4215223	0	+	0.42	(0.408,0.44]	chr9	386432	139	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000393293.4:ENST00000318560.6	protein_coding	protein_coding	protein_coding	protein_coding	1	42	2	2.89795	3.801025	4.7041	0.0110735	0.00381677	0.0873897	0.0562562
chr17	82529192	82529292	6692699	0	+	0.38	(0.378,0.408]	chr17	654627	85	INTRON	INTRON	FOXK2	ENSG00000141568.21	ENST00000473637.6:ENST00000335255.10:ENST00000527313.6:ENST00000570585.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	57	2	2.16303	3.800975	5.43892	0.0252473	2.28412e-4	0.12011	0.0133228
chr2	85617060	85617158	822018	0	+	0.306122	(0.28,0.32]	chr2	91637	2	INTRON	INTRON	USP39	ENSG00000168883.20	ENST00000459775.5:ENST00000491659.5:ENST00000474572.6:ENST00000450066.6:ENST00000613444.4:ENST00000448971.5:ENST00000442708.5:ENST00000465282.5:ENST00000409025.5:ENST00000455732.5:ENST00000409470.5:ENST00000323701.11:ENST00000458268.5:ENST00000409766.7:ENST00000493829.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	79	2	1.76048	3.8007850000000003	5.84109	0.0450149	1.04715e-4	0.149888	0.00863456
chr2	235746320	235746418	1043869	0	+	0.346939	(0.32,0.35]	chr2	111260	11	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1:ENST00000409538.5:ENST00000614409.4:ENST00000619456.4:ENST00000428334.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	86	2	1.83295	3.8007750000000002	5.7686	0.0224097	8.9843e-5	0.11692	0.0079464
chr12	119806121	119806221	5431555	0	-	0.3	(0.28,0.32]	chr12	518974	17	INTRON	INTRON	CIT	ENSG00000122966.17	ENST00000392521.7:ENST00000261833.11:ENST00000612548.4:ENST00000536325.1	protein_coding	protein_coding	protein_coding	protein_coding	3	79	2	1.86798	3.8007150000000003	5.73345	0.0335733	1.71668e-4	0.134145	0.0113605
chr1	27409018	27409104	405944	0	-	0.383721	(0.378,0.408]	chr1	48944	3	INTRON	INTRON	WASF2	ENSG00000158195.11	ENST00000618852.5:ENST00000536657.1	protein_coding	protein_coding	protein_coding	protein_coding	4	157	2	3.54187	3.800605	4.05934	9.09909e-5	1.88697e-6	0.00848955	8.35956e-4
chr17	2335077	2335159	6704882	0	-	0.365854	(0.35,0.378]	chr17	656442	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TSR1	ENSG00000167721.11	ENST00000301364.10:ENST00000576112.2:ENST00000571806.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	55	2	2.10859	3.800585	5.49258	0.0272722	8.19894e-4	0.136494	0.0264086
chr16	29516783	29516882	6470733	0	-	0.30303	(0.28,0.32]	chr16	625147	109	INTRON	INTRON	ENSG00000288632	ENSG00000288632.1	ENST00000675579.1	lncRNA	lncRNA	lncRNA	lncRNA	1	48	2	2.51488	3.80055	5.08622	0.0380957	0.00227525	0.141678	0.0437013
chr7	133402812	133402912	3419666	0	+	0.33	(0.32,0.35]	chr7	319348	60	INTRON	INTRON	EXOC4	ENSG00000131558.15	ENST00000486013.5:ENST00000393161.6:ENST00000253861.5:ENST00000462055.5:ENST00000486409.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	42	2	2.64129	3.8005000000000004	4.95971	0.0222819	0.00663522	0.124303	0.0703181
chr21	42848037	42848136	7467586	0	-	0.353535	(0.35,0.378]	chr21	760925	44	INTRON	INTRON	WDR4	ENSG00000160193.12	ENST00000330317.6	protein_coding	protein_coding	protein_coding	protein_coding	4	75	2	1.7339	3.80044	5.86698	0.0260366	1.76496e-4	0.133676	0.01216
chr16	69640520	69640619	6380758	0	+	0.323232	(0.32,0.35]	chr16	613175	81	INTRON	INTRON	NFAT5	ENSG00000102908.22	ENST00000426654.6:ENST00000349945.7:ENST00000354436.6:ENST00000627621.3:ENST00000650987.1:ENST00000567990.5:ENST00000567239.5:ENST00000393742.7:ENST00000565301.2:ENST00000566899.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	44	2	3.23331	3.8004299999999995	4.36755	0.0300552	0.00315414	0.129138	0.0515261
chr3	48694717	48694813	1689470	0	-	0.552083	(0.515,0.57]	chr3	172839	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	IP6K2	ENSG00000068745.15	ENST00000328631.10:ENST00000479914.5:ENST00000449563.5:ENST00000413654.5:ENST00000443853.5:ENST00000437427.5:ENST00000412850.5:ENST00000454335.5:ENST00000340879.8:ENST00000432678.6:ENST00000433104.2:ENST00000416707.1:ENST00000431721.6:ENST00000449610.5:ENST00000413298.5:ENST00000450045.5:ENST00000446860.5:ENST00000455545.5:ENST00000412795.5:ENST00000417896.1:ENST00000443964.1:ENST00000436134.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	56	2	2.27116	3.800365	5.32957	0.00601759	4.06834e-4	0.0700813	0.0185763
chr3	43528620	43528720	1674500	0	-	0.32	(0.28,0.32]	chr3	170972	955	INTRON	INTRON	ANO10	ENSG00000160746.13	ENST00000292246.8:ENST00000350459.8:ENST00000396091.7:ENST00000414522.6:ENST00000451430.6:ENST00000448045.1	protein_coding	protein_coding	protein_coding	protein_coding	3	72	2	2.25298	3.800315	5.34765	0.00791652	0.00287138	0.0797304	0.0474836
chr9	5025101	5025201	4096223	0	+	0.35	(0.32,0.35]	chr9	373243	25	INTRON	INTRON	JAK2	ENSG00000096968.14	ENST00000636127.1:ENST00000381652.4	protein_coding	protein_coding	protein_coding	protein_coding	1	45	2	3.3273	3.80015	4.273	0.0368357	0.00218894	0.138959	0.0435144
chr1	51867406	51867506	455184	0	-	0.31	(0.28,0.32]	chr1	54631	46	INTRON	INTRON	NRDC	ENSG00000078618.23	ENST00000354831.11:ENST00000539524.5:ENST00000352171.12:ENST00000491410.1:ENST00000468722.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	60	2	2.08149	3.800085	5.51868	0.031124	0.00162747	0.143644	0.0367966
chr1	150574175	150574274	551031	0	-	0.464646	(0.44,0.476]	chr1	64761	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	MCL1	ENSG00000143384.14	ENST00000617352.1:ENST00000678770.1:ENST00000678610.1:ENST00000464132.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	45	2	3.26669	3.8000749999999996	4.33346	0.0120349	0.00305435	0.0962115	0.0493883
chr2	42348838	42348937	1104905	0	-	0.484848	(0.476,0.515]	chr2	118585	146	INTRON	INTRON	COX7A2L	ENSG00000115944.15	ENST00000468711.5	protein_coding	protein_coding	protein_coding	protein_coding	2	56	2	2.54157	3.80002	5.05847	0.00697457	0.00108081	0.0718189	0.0300133
chr2	26377932	26378031	715336	0	+	0.353535	(0.35,0.378]	chr2	82601	24	INTRON	INTRON	SELENOI	ENSG00000138018.19	ENST00000260585.12:ENST00000447170.1	protein_coding	protein_coding	protein_coding	protein_coding	5	84	2	2.0653	3.8000049999999996	5.53471	0.00473276	6.96925e-4	0.0633849	0.024224
chr1	1763033	1763132	361581	0	-	0.616162	(0.57,1]	chr1	42211	6	INTRON	INTRON	NADK	ENSG00000008130.15	ENST00000378625.5:ENST00000341991.7:ENST00000341426.9:ENST00000492845.6:ENST00000492768.5:ENST00000460602.5:ENST00000464373.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	26	2	3.22856	3.79996	4.37136	0.00345135	0.00205928	0.0517761	0.0420839
chr12	9675207	9675307	5075597	0	+	0.6	(0.57,1]	chr12	479886	6	INTRON	INTRON	CLEC2D	ENSG00000069493.15	ENST00000536355.5:ENST00000487752.1:ENST00000290855.11:ENST00000325960.11:ENST00000261340.11:ENST00000444971.6:ENST00000492359.6:ENST00000479877.5:ENST00000261339.10:ENST00000543300.5:ENST00000545918.5:ENST00000466035.6:ENST00000476198.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	26	2	3.22856	3.79996	4.37136	0.00345135	0.00205928	0.0517761	0.0420839
chr4	2914086	2914185	1915750	0	+	0.636364	(0.57,1]	chr4	192335	43	INTRON	INTRON	ADD1	ENSG00000087274.19	ENST00000683351.1:ENST00000398125.5:ENST00000264758.11:ENST00000513328.6:ENST00000503455.6:ENST00000355842.7:ENST00000651918.1:ENST00000398129.5:ENST00000398123.6:ENST00000514940.5:ENST00000541051.5:ENST00000513762.2:ENST00000536424.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	26	2	3.22856	3.79996	4.37136	0.00345135	0.00205928	0.0517761	0.0420839
chr8	67099976	67100075	3776992	0	+	0.222222	[0,0.28]	chr8	350299	9	EXON_MRNA	EXON_MRNA:INTRON	CSPP1	ENSG00000104218.16	ENST00000676113.1:ENST00000675306.2:ENST00000678156.1:ENST00000262210.11:ENST00000678017.1:ENST00000675869.1:ENST00000678542.1:ENST00000677619.1:ENST00000676605.1:ENST00000676471.1:ENST00000677256.1:ENST00000676847.1:ENST00000677009.1:ENST00000675820.1:ENST00000676317.1:ENST00000677592.1:ENST00000676573.1:ENST00000678318.1:ENST00000677473.1:ENST00000674993.1:ENST00000678553.1:ENST00000678204.1:ENST00000679226.1:ENST00000676882.1:ENST00000675955.1:ENST00000678728.1:ENST00000677430.1:ENST00000677455.1:ENST00000678616.1:ENST00000678362.1:ENST00000679112.1:ENST00000678645.1:ENST00000676567.1:ENST00000677845.1:ENST00000519163.6:ENST00000676858.1:ENST00000678747.1:ENST00000678821.1:ENST00000678744.1:ENST00000519668.1:ENST00000676697.1:ENST00000678216.1:ENST00000677855.1:ENST00000676695.1:ENST00000677836.1:ENST00000677070.1:ENST00000678444.1:ENST00000676534.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	48	2	2.90797	3.7999400000000003	4.69191	0.0269474	0.0118539	0.123442	0.0962115
chr1	40204510	40204610	80400	0	+	0.38	(0.378,0.408]	chr1	10431	15	INTRON	INTRON	RLF	ENSG00000117000.9	ENST00000372771.5	protein_coding	protein_coding	protein_coding	protein_coding	2	53	2	2.17608	3.79983	5.42358	0.0218783	8.39231e-4	0.123836	0.0266487
chr19	18520320	18520420	7152997	0	-	0.59	(0.57,1]	chr19	722886	445	INTRON	INTRON	ELL	ENSG00000105656.13	ENST00000262809.9:ENST00000594635.6:ENST00000596915.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	26	2	2.79889	3.7995	4.80011	0.0110274	6.07135e-4	0.0927187	0.0226059
chr7	148735338	148735437	3444055	0	+	0.59596	(0.57,1]	chr7	321178	47	INTRON	INTRON	CUL1	ENSG00000055130.18	ENST00000409469.5:ENST00000662716.1:ENST00000665936.1:ENST00000663044.1:ENST00000602748.5:ENST00000663835.1:ENST00000655324.1:ENST00000662132.1:ENST00000325222.9:ENST00000656001.1:ENST00000666124.1:ENST00000671421.1:ENST00000671397.1:ENST00000662670.1:ENST00000660240.1:ENST00000662975.1:ENST00000660013.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	26	2	2.79889	3.7995	4.80011	0.0110274	6.07135e-4	0.0927187	0.0226059
chr1	147972550	147972650	213242	0	+	0.25	[0,0.28]	chr1	23682	22	INTRON	INTRON	GPR89B	ENSG00000188092.15	ENST00000478307.5:ENST00000488165.5:ENST00000314163.12:ENST00000491975.5:ENST00000461786.5:ENST00000488603.5:ENST00000490955.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	48	2	2.43761	3.799455	5.1613	0.0423864	0.00866441	0.161744	0.0787025
chr2	32420157	32420257	731417	0	+	0.32	(0.28,0.32]	chr2	84325	36	INTRON	INTRON	BIRC6	ENSG00000115760.15	ENST00000421745.7:ENST00000648282.1	protein_coding	protein_coding	protein_coding	protein_coding	1	48	2	2.45545	3.79943	5.14341	0.0438092	0.00185891	0.14901	0.039946
chr10	69382891	69382991	4446531	0	+	0.39	(0.378,0.408]	chr10	410282	1	SS5_PROX	SS5_PROX:INTRON	HK1	ENSG00000156515.24	ENST00000436817.6:ENST00000360289.6:ENST00000448642.6:ENST00000643399.2:ENST00000298649.8:ENST00000359426.7:ENST00000493591.6:ENST00000494253.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	65	2	1.78011	3.79941	5.81871	0.0356367	1.62088e-4	0.151629	0.0116382
chr6	34673255	34673355	3085985	0	-	0.46	(0.44,0.476]	chr6	288696	14	INTRON	INTRON	ILRUN	ENSG00000196821.10	ENST00000374026.7:ENST00000374023.8	protein_coding	protein_coding	protein_coding	protein_coding	1	41	2	2.74063	3.7994000000000003	4.85817	0.0176095	0.00223254	0.105143	0.0435144
chr3	177104030	177104130	1871505	0	-	0.49	(0.476,0.515]	chr3	187402	47	INTRON	INTRON	TBL1XR1	ENSG00000177565.18	ENST00000457928.7:ENST00000430069.5:ENST00000673974.1:ENST00000352800.10:ENST00000422442.6:ENST00000428970.5:ENST00000424913.5:ENST00000437738.5:ENST00000431421.5:ENST00000635794.1:ENST00000630796.2:ENST00000450267.5:ENST00000630833.2:ENST00000431674.5:ENST00000422066.5:ENST00000443315.5:ENST00000627825.2:ENST00000427349.5:ENST00000413084.5:ENST00000637137.1:ENST00000491623.2:ENST00000637544.1:ENST00000636478.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	116	2	2.90668	3.79938	4.69208	0.00164243	1.09059e-6	0.0369207	5.99786e-4
chr13	50045632	50045732	5594223	0	-	0.29	(0.28,0.32]	chr13	534693	4	SS3_PROX	SS3_PROX:INTRON	DLEU2	ENSG00000231607.14	ENST00000621282.4:ENST00000688690.1:ENST00000668305.1:ENST00000425586.5:ENST00000686946.1:ENST00000458725.7:ENST00000692504.1:ENST00000443587.6:ENST00000686700.1:ENST00000691340.1:ENST00000433070.7:ENST00000659339.1	lncRNA	lncRNA	lncRNA	lncRNA	1	48	2	2.57195	3.799305	5.02666	0.0331711	0.0027935	0.133994	0.0488769
chr20	39011279	39011379	7273209	0	+	0.31	(0.28,0.32]	chr20	739154	3	INTRON	INTRON	DHX35	ENSG00000101452.15	ENST00000373325.6:ENST00000252011.8:ENST00000373323.8:ENST00000652169.1:ENST00000484417.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	48	2	2.57195	3.799305	5.02666	0.0331711	0.0027935	0.133994	0.0488769
chr2	238449182	238449281	1052792	0	+	0.434343	(0.408,0.44]	chr2	112004	28	UTR3	UTR3:EXON_MRNA:INTRON	ASB1	ENSG00000065802.12	ENST00000264607.9:ENST00000481566.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	93	2	1.39837	3.798815	6.19926	0.0342165	1.98542e-5	0.146942	0.00360253
chr1	223784714	223784814	642740	0	-	0.38	(0.378,0.408]	chr1	75863	4	SS3_PROX	SS3_PROX:INTRON	TP53BP2	ENSG00000143514.17	ENST00000343537.12:ENST00000391878.6:ENST00000483398.5:ENST00000498843.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	39	2	2.85854	3.798465	4.73839	0.0107837	0.00837252	0.0920575	0.0774402
chr3	32548459	32548559	1649897	0	-	0.38	(0.378,0.408]	chr3	169157	21	INTRON	INTRON	DYNC1LI1	ENSG00000144635.9	ENST00000273130.9:ENST00000481915.5:ENST00000432458.6:ENST00000413350.5:ENST00000424991.1:ENST00000475193.1:ENST00000474077.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	39	2	2.85854	3.798465	4.73839	0.0107837	0.00837252	0.0920575	0.0774402
chr6	36597041	36597115	2854441	0	+	0.297297	(0.28,0.32]	chr6	269776	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	SRSF3	ENSG00000112081.17	ENST00000613941.4:ENST00000373715.11:ENST00000620242.1:ENST00000339436.11:ENST00000477442.6:ENST00000620941.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	604	2	3.65737	3.798395	3.93942	3.35841e-7	1.90734e-7	2.93494e-4	2.16441e-4
chr10	103417142	103417242	4516424	0	+	0.39	(0.378,0.408]	chr10	416420	4	SS5_PROX	SS5_PROX:INTRON	PDCD11	ENSG00000148843.15	ENST00000369797.8:ENST00000649849.1	protein_coding	protein_coding	protein_coding	protein_coding	1	39	2	2.78705	3.798365	4.80968	0.0135539	0.00679828	0.101363	0.0711802
chr16	28824813	28824865	6334341	0	+	0.403846	(0.378,0.408]	chr16	606503	2	SS5_PROX	SS5_PROX:INTRON	ATXN2L	ENSG00000168488.19	ENST00000336783.9:ENST00000563314.5:ENST00000340394.12:ENST00000382686.8:ENST00000395547.6:ENST00000325215.10:ENST00000564304.5:ENST00000570200.5:ENST00000562867.5:ENST00000568266.5:ENST00000564656.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	39	2	2.78705	3.798365	4.80968	0.0135539	0.00679828	0.101363	0.0711802
chr17	7668772	7668865	6719344	0	-	0.397849	(0.378,0.408]	chr17	659138	5	UTR3	UTR3:EXON_MRNA:INTRON	TP53	ENSG00000141510.18	ENST00000413465.6:ENST00000635293.1:ENST00000359597.8:ENST00000620739.4:ENST00000610292.4:ENST00000504290.5:ENST00000504937.5:ENST00000510385.5:ENST00000610623.4:ENST00000618944.4:ENST00000619186.4:ENST00000420246.6:ENST00000455263.6:ENST00000610538.4:ENST00000622645.4:ENST00000269305.9:ENST00000445888.6:ENST00000619485.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	118	2	3.09258	3.798	4.50342	8.09686e-4	3.99854e-6	0.0263656	0.00131958
chr18	2758446	2758542	6865935	0	+	0.302083	(0.28,0.32]	chr18	680135	17	INTRON	INTRON	SMCHD1	ENSG00000101596.17	ENST00000320876.11:ENST00000688342.1:ENST00000693213.1:ENST00000577880.5:ENST00000584897.5:ENST00000686763.1:ENST00000686864.1:ENST00000688708.1:ENST00000645355.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	44	2	2.86113	3.7979350000000003	4.73474	0.0162835	0.0122675	0.101453	0.0969406
chr3	172158562	172158662	1560740	0	+	0.32	(0.28,0.32]	chr3	161551	96	INTRON	INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000421757.5:ENST00000469491.5:ENST00000336824.8:ENST00000423424.5:ENST00000416957.5:ENST00000478016.1:ENST00000443501.1:ENST00000476794.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	44	2	2.86113	3.7979350000000003	4.73474	0.0162835	0.0122675	0.101453	0.0969406
chr3	172385485	172385585	1563040	0	+	0.32	(0.28,0.32]	chr3	161691	40	INTRON	INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000336824.8:ENST00000416957.5	protein_coding	protein_coding	protein_coding	protein_coding	1	44	2	2.86113	3.7979350000000003	4.73474	0.0162835	0.0122675	0.101453	0.0969406
chr12	122353286	122353381	5440976	0	-	0.4	(0.378,0.408]	chr12	520404	1	INTRON	INTRON	CLIP1	ENSG00000130779.22	ENST00000361654.8:ENST00000358808.6:ENST00000302528.11:ENST00000545889.6:ENST00000620786.5:ENST00000537178.5:ENST00000540304.6:ENST00000541410.1:ENST00000537004.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	42	2	3.3797	3.7976650000000003	4.21563	0.0315429	0.00154501	0.13151	0.0362716
chr12	11107527	11107627	5268870	0	-	0.32	(0.28,0.32]	chr12	502251	454	INTRON	INTRON	ENSG00000275778:PRH1	ENSG00000275778.2:ENSG00000231887.8	ENST00000536668.2:ENST00000535024.6:ENST00000541977.5:ENST00000546265.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	44	2	2.60656	3.79764	4.98872	0.0256827	0.00838468	0.133676	0.0774402
chr15	99638267	99638367	6114875	0	+	0.32	(0.28,0.32]	chr15	582076	47	INTRON	INTRON	MEF2A	ENSG00000068305.18	ENST00000560493.5:ENST00000354410.9:ENST00000558812.5:ENST00000558856.5:ENST00000685785.1:ENST00000559036.5:ENST00000557785.5:ENST00000558983.5:ENST00000557942.6:ENST00000338042.11:ENST00000558049.5:ENST00000449277.6:ENST00000690055.1:ENST00000691492.1:ENST00000686611.1:ENST00000559903.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	44	2	2.60656	3.79764	4.98872	0.0256827	0.00838468	0.133676	0.0774402
chr17	47161291	47161390	6789108	0	-	0.313131	(0.28,0.32]	chr17	669610	10	EXON_LNCRNA	EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CDC27:ENSG00000262265	ENSG00000004897.12:ENSG00000262265.2	ENST00000066544.8:ENST00000531206.5:ENST00000533415.5:ENST00000527547.5:ENST00000526866.5:ENST00000525495.6:ENST00000574304.5:ENST00000573550.5:ENST00000570818.5:ENST00000575483.5:ENST00000532893.5:ENST00000528748.5:ENST00000532575.1:ENST00000647948.1:ENST00000574021.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA:processed_transcript	1	44	2	2.60656	3.79764	4.98872	0.0256827	0.00838468	0.133676	0.0774402
chr17	62049746	62049845	6810725	0	-	0.535354	(0.515,0.57]	chr17	672946	138	INTRON	INTRON	MED13	ENSG00000108510.10	ENST00000397786.7	protein_coding	protein_coding	protein_coding	protein_coding	3	56	2	2.11724	3.797615	5.47799	0.0110335	2.09356e-4	0.0927187	0.0131276
chr9	99117087	99117187	4175554	0	+	0.54	(0.515,0.57]	chr9	380654	114	INTRON	INTRON	TGFBR1	ENSG00000106799.13	ENST00000547314.5:ENST00000552573.6:ENST00000374990.6:ENST00000374994.9:ENST00000552516.5:ENST00000549766.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	56	2	2.11724	3.797615	5.47799	0.0110335	2.09356e-4	0.0927187	0.0131276
chr7	99447572	99447672	3361939	0	+	0.45	(0.44,0.476]	chr7	313982	4	SS3_PROX	SS3_PROX:INTRON	CPSF4	ENSG00000160917.15	ENST00000436336.6:ENST00000292476.10:ENST00000451876.5:ENST00000430038.5:ENST00000441580.5:ENST00000412686.5:ENST00000484112.5:ENST00000452047.1:ENST00000471455.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	40	2	2.39604	3.7974200000000002	5.1988	0.0404291	0.00151532	0.161534	0.0352794
chr10	74086104	74086204	4455394	0	+	0.56	(0.515,0.57]	chr10	411437	22	INTRON	INTRON	VCL	ENSG00000035403.18	ENST00000623461.3:ENST00000372755.7:ENST00000624354.3:ENST00000211998.10:ENST00000478896.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	35	2	2.9114	3.79725	4.6831	0.00826019	0.00471288	0.0813266	0.0600108
chr12	111545288	111545388	5412686	0	-	0.53	(0.515,0.57]	chr12	516916	196	INTRON	INTRON	ATXN2	ENSG00000204842.18	ENST00000642389.2:ENST00000608853.5:ENST00000672613.1:ENST00000673436.1:ENST00000643669.2:ENST00000616825.4:ENST00000389153.10:ENST00000550104.5:ENST00000483311.6:ENST00000672335.1:ENST00000492467.6:ENST00000673557.1:ENST00000673283.1:ENST00000673449.1:ENST00000535949.5:ENST00000542287.6:ENST00000644883.1:ENST00000647305.1:ENST00000671792.1:ENST00000392645.6:ENST00000672105.1:ENST00000471866.5:ENST00000549455.1:ENST00000548492.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	35	2	2.9114	3.79725	4.6831	0.00826019	0.00471288	0.0813266	0.0600108
chr14	45221135	45221235	5884966	0	-	0.53	(0.515,0.57]	chr14	558370	23	INTRON	INTRON	MIS18BP1	ENSG00000129534.14	ENST00000310806.9:ENST00000469020.5:ENST00000554093.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	35	2	2.9114	3.79725	4.6831	0.00826019	0.00471288	0.0813266	0.0600108
chr14	58262213	58262312	5731083	0	+	0.565657	(0.515,0.57]	chr14	544106	8	INTRON	INTRON	PSMA3	ENSG00000100567.13	ENST00000216455.9:ENST00000554812.5:ENST00000557087.5:ENST00000555931.5:ENST00000412908.6:ENST00000555743.1:ENST00000557508.5:ENST00000553677.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	35	2	2.9114	3.79725	4.6831	0.00826019	0.00471288	0.0813266	0.0600108
chr15	30631273	30631368	5992316	0	+	0.263158	[0,0.28]	chr15	569695	1	INTRON	INTRON	ENSG00000284906:ARHGAP11B	ENSG00000284906.3:ENSG00000285077.3	ENST00000564902.5:ENST00000646747.1:ENST00000689358.1:ENST00000428041.4:ENST00000693711.1:ENST00000685924.1:ENST00000563110.6:ENST00000566362.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	64	2	2.24546	3.79718	5.3489	0.0206502	0.00514751	0.122348	0.062965
chr1	153895173	153895272	557488	0	-	0.545455	(0.515,0.57]	chr1	65989	83	INTRON	INTRON	GATAD2B	ENSG00000143614.10	ENST00000368655.5:ENST00000634544.1:ENST00000634408.1:ENST00000634401.1:ENST00000634791.1:ENST00000636014.1:ENST00000637331.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	35	2	2.83188	3.79716	4.76244	0.0108207	0.00362147	0.0920575	0.0533855
chr12	95256049	95256149	5192485	0	+	0.53	(0.515,0.57]	chr12	491015	1	SS3_PROX	SS3_PROX:INTRON	VEZT	ENSG00000028203.19	ENST00000550803.5:ENST00000549589.5:ENST00000547611.5:ENST00000547997.5:ENST00000549002.5:ENST00000546557.5:ENST00000551746.5:ENST00000548838.5:ENST00000436874.6:ENST00000547484.5:ENST00000551472.5:ENST00000546398.5:ENST00000548455.5:ENST00000553063.5:ENST00000552660.5:ENST00000552626.5:ENST00000548245.5:ENST00000549624.5:ENST00000548822.5:ENST00000552031.5:ENST00000551994.5:ENST00000551039.5:ENST00000549192.5:ENST00000552821.5:ENST00000548371.5:ENST00000550106.5:ENST00000547894.5:ENST00000551695.5:ENST00000551356.5:ENST00000551311.5:ENST00000546365.5:ENST00000551902.5:ENST00000546445.5:ENST00000546409.5:ENST00000397792.8:ENST00000356859.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	35	2	2.83188	3.79716	4.76244	0.0108207	0.00362147	0.0920575	0.0533855
chr3	73006436	73006536	1452050	0	+	0.54	(0.515,0.57]	chr3	152951	79	INTRON	INTRON	PPP4R2	ENSG00000163605.15	ENST00000482242.5:ENST00000356692.10:ENST00000470976.1:ENST00000488810.5:ENST00000495566.1:ENST00000476505.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	35	2	2.83188	3.79716	4.76244	0.0108207	0.00362147	0.0920575	0.0533855
chr1	19171677	19171775	386420	0	-	0.459184	(0.44,0.476]	chr1	46022	4	INTRON	INTRON	UBR4	ENSG00000127481.15	ENST00000375254.8:ENST00000419533.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	42	2	2.97451	3.7970249999999997	4.61954	0.00853825	0.00506805	0.0780043	0.0646039
chr5	180238209	180238308	2782487	0	-	0.454545	(0.44,0.476]	chr5	262674	18	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	MAPK9	ENSG00000050748.18	ENST00000452135.7:ENST00000343111.10:ENST00000455781.5:ENST00000393360.7:ENST00000347470.8:ENST00000520212.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	42	2	2.97451	3.7970249999999997	4.61954	0.00853825	0.00506805	0.0780043	0.0646039
chr1	174448604	174448703	260017	0	+	0.474747	(0.44,0.476]	chr1	30821	5	CDS	CDS:EXON_MRNA:INTRON	RABGAP1L:GPR52	ENSG00000152061.24:ENSG00000203737.5	ENST00000357444.10:ENST00000251507.8:ENST00000681986.1:ENST00000367690.5:ENST00000526253.1:ENST00000367685.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	90	2	3.41176	3.79693	4.1821	0.00130987	4.81739e-5	0.0333932	0.00601623
chr6	35842034	35842134	3088013	0	-	0.22	[0,0.28]	chr6	288815	1	SS5_PROX	SS5_PROX:INTRON	SRPK1	ENSG00000096063.16	ENST00000373825.7:ENST00000423325.6:ENST00000346162.10:ENST00000361690.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	89	2	1.92964	3.796685	5.66373	0.0157154	0.00196371	0.109464	0.0401678
chr2	180004975	180005075	1283148	0	-	0.39	(0.378,0.408]	chr2	135164	112	INTRON	INTRON	CWC22	ENSG00000163510.14	ENST00000410053.8:ENST00000404136.2	protein_coding	protein_coding	protein_coding	protein_coding	1	43	2	2.90162	3.7966550000000003	4.69169	0.0113157	0.00432302	0.0886121	0.0599409
chr20	35408644	35408744	7335176	0	-	0.5	(0.476,0.515]	chr20	747197	141	INTRON	INTRON	UQCC1	ENSG00000101019.22	ENST00000374380.6:ENST00000374394.7:ENST00000374384.6:ENST00000359226.6:ENST00000349714.9:ENST00000457259.5:ENST00000374385.10:ENST00000453855.5:ENST00000424405.5:ENST00000443429.5:ENST00000438533.5:ENST00000397554.5:ENST00000491125.5:ENST00000491040.5:ENST00000397553.6:ENST00000495752.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	41	2	2.28264	3.79661	5.31058	0.0534132	9.15544e-4	0.179876	0.0278396
chr21	10448631	10448731	7368481	0	+	0.25	[0,0.28]	chr21	751975	334	INTRON	INTRON	BAGE2	ENSG00000187172.15	ENST00000474011.5:ENST00000470054.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	2	64	2	2.28885	3.796545	5.30424	0.0181093	0.00584781	0.114853	0.0667594
chr7	155736629	155736729	3452827	0	+	0.26	[0,0.28]	chr7	322702	178	INTRON	INTRON	RBM33	ENSG00000184863.11	ENST00000401878.8:ENST00000307403.6:ENST00000440108.5:ENST00000392761.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	64	2	2.28885	3.796545	5.30424	0.0181093	0.00584781	0.114853	0.0667594
chr12	54313231	54313330	5143574	0	+	0.323232	(0.32,0.35]	chr12	485576	115	INTRON	INTRON	COPZ1	ENSG00000111481.10	ENST00000552848.5:ENST00000548076.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	46	2	2.30673	3.796515	5.2863	0.0584434	7.56575e-4	0.167723	0.0251966
chr19	34468170	34468262	7053536	0	+	0.336957	(0.32,0.35]	chr19	703579	7	INTRON	INTRON	UBA2	ENSG00000126261.13	ENST00000246548.9:ENST00000439527.6:ENST00000592791.1:ENST00000588585.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	46	2	2.30673	3.796515	5.2863	0.0584434	7.56575e-4	0.167723	0.0251966
chr6	160033107	160033207	3023616	0	+	0.49	(0.476,0.515]	chr6	282057	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	IGF2R	ENSG00000197081.16	ENST00000676781.1:ENST00000677704.1:ENST00000356956.6:ENST00000649737.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	40	2	3.2463	3.7963899999999997	4.34648	0.0193566	0.00262374	0.108861	0.0470772
chrX	101036279	101036376	7855120	0	-	0.484536	(0.476,0.515]	chrX	800806	2	INTRON	INTRON	TRMT2B	ENSG00000188917.15	ENST00000545398.5:ENST00000372936.4:ENST00000372939.5:ENST00000372935.5:ENST00000478422.1:ENST00000488615.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	40	2	3.2463	3.7963899999999997	4.34648	0.0193566	0.00262374	0.108861	0.0470772
chr19	18512122	18512222	7152915	0	-	0.41	(0.408,0.44]	chr19	722886	363	INTRON	INTRON	ELL	ENSG00000105656.13	ENST00000262809.9:ENST00000594635.6:ENST00000596915.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	56	2	2.00228	3.7963649999999998	5.59045	0.0389732	9.6776e-5	0.143072	0.00826486
chr6	157013099	157013199	3009524	0	+	0.63	(0.57,1]	chr6	281130	276	INTRON	INTRON	ARID1B	ENSG00000049618.24	ENST00000346085.10:ENST00000636930.2:ENST00000647938.1:ENST00000350026.10:ENST00000674298.1:ENST00000674190.1:ENST00000414678.7:ENST00000319584.11:ENST00000452544.2:ENST00000637887.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	28	2	3.42323	3.79602	4.16881	0.00574776	8.58388e-4	0.0681402	0.0267428
chr9	123412705	123412799	4340821	0	-	0.606383	(0.57,1]	chr9	399003	5	INTRON	INTRON	DENND1A	ENSG00000119522.17	ENST00000373624.6:ENST00000473039.5:ENST00000394215.7:ENST00000373620.7:ENST00000491650.5:ENST00000497135.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	28	2	3.42323	3.79602	4.16881	0.00574776	8.58388e-4	0.0681402	0.0267428
chr5	126972751	126972851	2713980	0	-	0.37	(0.35,0.378]	chr5	255278	260	INTRON	INTRON	MARCHF3	ENSG00000173926.6	ENST00000308660.6:ENST00000502289.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	71	2	1.99351	3.7959899999999998	5.59847	0.020841	1.39739e-4	0.111648	0.0101825
chr1	36018436	36018536	72036	0	+	0.45	(0.44,0.476]	chr1	9206	40	INTRON	INTRON	AGO3	ENSG00000126070.20	ENST00000634486.1:ENST00000373191.9:ENST00000246314.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	52	2	2.14573	3.795965	5.4462	0.0238593	5.83686e-4	0.129075	0.0223753
chr18	789871	789970	6940481	0	-	0.464646	(0.44,0.476]	chr18	686525	15	INTRON	INTRON	YES1	ENSG00000176105.14	ENST00000584307.5:ENST00000314574.5:ENST00000577611.1:ENST00000581960.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	52	2	2.14573	3.795965	5.4462	0.0238593	5.83686e-4	0.129075	0.0223753
chr2	197885094	197885194	969907	0	+	0.37	(0.35,0.378]	chr2	104858	744	INTRON	INTRON	PLCL1	ENSG00000115896.16	ENST00000428675.6:ENST00000435320.1:ENST00000487695.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	65	2	1.97646	3.7959500000000004	5.61544	0.0193942	5.06729e-4	0.119831	0.020816
chr9	130805353	130805453	4214778	0	+	0.37	(0.35,0.378]	chr9	386427	905	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000393293.4	protein_coding	protein_coding	protein_coding	protein_coding	3	65	2	1.97646	3.7959500000000004	5.61544	0.0193942	5.06729e-4	0.119831	0.020816
chr11	58585483	58585583	4793807	0	+	0.31	(0.28,0.32]	chr11	443838	2	INTRON	INTRON	ZFP91	ENSG00000186660.15	ENST00000316059.7	protein_coding	protein_coding	protein_coding	protein_coding	1	48	2	2.39347	3.7959449999999997	5.19842	0.0504457	0.00152333	0.156383	0.0360297
chr12	104497904	104498004	5211093	0	+	0.42	(0.408,0.44]	chr12	493315	400	INTRON	INTRON	CHST11	ENSG00000171310.11	ENST00000303694.6:ENST00000547956.1:ENST00000549260.5:ENST00000546689.1	protein_coding	protein_coding	protein_coding	protein_coding	1	41	2	2.2957	3.79591	5.29612	0.0516458	0.00113523	0.176696	0.0307488
chr4	151103378	151103477	2065079	0	+	0.434343	(0.408,0.44]	chr4	204390	4	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	RPS3A	ENSG00000145425.10	ENST00000509736.5:ENST00000274065.9:ENST00000507485.1:ENST00000514682.5:ENST00000515818.5:ENST00000512690.5:ENST00000512797.5:ENST00000507327.5:ENST00000515792.5:ENST00000506126.5:ENST00000510993.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	41	2	2.2957	3.79591	5.29612	0.0516458	0.00113523	0.176696	0.0307488
chr16	29552494	29552585	6471118	0	-	0.274725	[0,0.28]	chr16	625247	8	INTRON	INTRON	ENSG00000288632:SMG1P2	ENSG00000288632.1:ENSG00000205534.6	ENST00000675579.1:ENST00000566127.1	lncRNA	lncRNA	lncRNA:transcribed_unprocessed_pseudogene	lncRNA:transcribed_unprocessed_pseudogene	2	121	2	3.72771	3.7958600000000002	3.86401	6.37628e-4	5.87492e-4	0.0231685	0.0220073
chr7	152161169	152161263	3678481	0	-	0.308511	(0.28,0.32]	chr7	341422	7	EXON_MRNA	EXON_MRNA:INTRON	KMT2C	ENSG00000055609.21	ENST00000360104.8:ENST00000262189.11:ENST00000418061.2:ENST00000680877.1:ENST00000424877.6:ENST00000679560.1:ENST00000683120.1:ENST00000681923.1:ENST00000679393.1:ENST00000683200.1:ENST00000680029.1:ENST00000683178.1:ENST00000683502.1:ENST00000684261.1:ENST00000682283.1:ENST00000473186.5:ENST00000684649.1:ENST00000679882.1:ENST00000683397.1:ENST00000684307.1:ENST00000683625.1:ENST00000684398.1:ENST00000683670.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	114	2	1.43233	3.7958000000000003	6.15927	0.028373	1.38706e-4	0.138205	0.0107072
chrX	123619705	123619800	7877882	0	-	0.305263	(0.28,0.32]	chrX	802422	3	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	THOC2	ENSG00000125676.20	ENST00000448128.5:ENST00000245838.13:ENST00000441692.5:ENST00000497887.5:ENST00000618150.4:ENST00000432353.5:ENST00000355725.8:ENST00000416618.5:ENST00000491737.5:ENST00000464992.6:ENST00000496830.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	59	2	2.28998	3.7957549999999998	5.30153	0.0166401	0.00332518	0.110511	0.0512081
chr1	212304985	212305085	308271	0	+	0.51	(0.476,0.515]	chr1	35560	25	INTRON	INTRON	PPP2R5A	ENSG00000066027.12	ENST00000261461.7:ENST00000537030.3:ENST00000498129.6:ENST00000479259.1:ENST00000498123.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	66	2	2.09697	3.795655	5.49434	0.0136924	1.62782e-4	0.0949306	0.0109774
chr2	65228457	65228556	799062	0	+	0.494949	(0.476,0.515]	chr2	89326	1	INTRON	INTRON	ACTR2	ENSG00000138071.15	ENST00000476840.5:ENST00000260641.10:ENST00000471552.5:ENST00000377982.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	66	2	2.09697	3.795655	5.49434	0.0136924	1.62782e-4	0.0949306	0.0109774
chr17	75901448	75901535	6839073	0	-	0.563218	(0.515,0.57]	chr17	676138	3	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MRPL38	ENSG00000204316.13	ENST00000309352.4:ENST00000471434.1:ENST00000477736.5:ENST00000493104.5:ENST00000494179.5:ENST00000585475.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	38	2	3.09002	3.79552	4.50102	0.00510768	0.00491099	0.0646039	0.0609494
chr5	150444832	150444924	2751193	0	-	0.521739	(0.515,0.57]	chr5	259119	2	SS3_PROX	SS3_PROX:INTRON	RPS14	ENSG00000164587.13	ENST00000407193.7:ENST00000401695.8:ENST00000521466.5:ENST00000519690.1:ENST00000312037.6:ENST00000518139.5:ENST00000642507.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	129	2	2.57697	3.79551	5.01405	0.00153959	1.33228e-7	0.0362709	1.73415e-4
chr19	4946704	4946804	7003253	0	+	0.51	(0.476,0.515]	chr19	694762	2	SS3_PROX	SS3_PROX:INTRON	UHRF1	ENSG00000276043.5	ENST00000612630.4:ENST00000620565.4:ENST00000624301.3:ENST00000613817.4:ENST00000650932.1:ENST00000615884.4:ENST00000622802.4:ENST00000616255.1	protein_coding	protein_coding	protein_coding	protein_coding	1	40	2	2.38442	3.7954350000000003	5.20645	0.0417472	0.00136049	0.161736	0.0336321
chr2	121492318	121492417	1220807	0	-	0.494949	(0.476,0.515]	chr2	129999	21	INTRON	INTRON	CLASP1	ENSG00000074054.20	ENST00000263710.8:ENST00000397587.7:ENST00000541377.5:ENST00000409078.8:ENST00000455322.6:ENST00000452274.6:ENST00000418989.5:ENST00000449975.1:ENST00000474065.5:ENST00000480007.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	40	2	2.38442	3.7954350000000003	5.20645	0.0417472	0.00136049	0.161736	0.0336321
chr4	55527029	55527129	2149710	0	-	0.28	[0,0.28]	chr4	211545	166	INTRON	INTRON	CLOCK	ENSG00000134852.15	ENST00000513440.6:ENST00000381322.5:ENST00000435527.6:ENST00000506923.5:ENST00000509151.5:ENST00000513033.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	52	2	2.44242	3.795095	5.14777	0.0491024	0.00311898	0.155269	0.0512673
chr5	39041925	39042025	2605323	0	-	0.24	[0,0.28]	chr5	247896	204	INTRON	INTRON	RICTOR	ENSG00000164327.13	ENST00000357387.8:ENST00000511516.5:ENST00000296782.9:ENST00000510711.5:ENST00000513566.1:ENST00000514735.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	52	2	2.44242	3.795095	5.14777	0.0491024	0.00311898	0.155269	0.0512673
chr1	180709196	180709296	270368	0	+	0.39	(0.378,0.408]	chr1	31620	264	INTRON	INTRON	XPR1	ENSG00000143324.14	ENST00000367590.9:ENST00000367589.3	protein_coding	protein_coding	protein_coding	protein_coding	1	39	2	2.92665	3.7950150000000002	4.66338	0.0103469	0.0086017	0.0850389	0.083729
chr9	19233529	19233629	4104874	0	+	0.38	(0.378,0.408]	chr9	373894	23	INTRON	INTRON	DENND4C	ENSG00000137145.21	ENST00000602925.5:ENST00000434457.7:ENST00000602708.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	39	2	2.92665	3.7950150000000002	4.66338	0.0103469	0.0086017	0.0850389	0.083729
chr7	156854180	156854280	3687628	0	-	0.43	(0.408,0.44]	chr7	342096	169	INTRON	INTRON	LMBR1	ENSG00000105983.23	ENST00000353442.10:ENST00000415428.5:ENST00000454132.5:ENST00000434503.5:ENST00000430278.5:ENST00000434278.5:ENST00000444719.5:ENST00000461469.5:ENST00000414218.1:ENST00000434453.1:ENST00000498034.5:ENST00000433968.5:ENST00000485985.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	44	2	3.15414	3.79497	4.4358	0.00893097	0.00469847	0.0849778	0.0600108
chr1	54277838	54277938	462470	0	-	0.57	(0.515,0.57]	chr1	55761	193	INTRON	INTRON	SSBP3	ENSG00000157216.16	ENST00000610401.5:ENST00000357475.9:ENST00000371319.8:ENST00000417664.7:ENST00000533946.6:ENST00000326956.12:ENST00000371320.8:ENST00000426150.5:ENST00000533209.5:ENST00000525990.1:ENST00000528787.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	101	2	3.08789	3.794855	4.50182	4.83127e-4	4.30039e-6	0.0199261	0.00151054
chr19	58285118	58285216	7107088	0	+	0.438776	(0.408,0.44]	chr19	713374	42	INTRON	INTRON	ZNF8:ZNF8-ERVK3-1	ENSG00000278129.2:ENSG00000267216.1	ENST00000621650.2:ENST00000591325.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	1	40	2	2.3975	3.79476	5.19202	0.040266	0.0016671	0.161534	0.0369207
chr5	72274358	72274458	2640340	0	-	0.42	(0.408,0.44]	chr5	250954	164	INTRON	INTRON	MRPS27	ENSG00000113048.18	ENST00000694990.1:ENST00000694989.1:ENST00000522042.2:ENST00000694988.1:ENST00000261413.10:ENST00000513900.6:ENST00000695403.1:ENST00000523654.6:ENST00000694998.1:ENST00000694997.1:ENST00000695298.1:ENST00000694996.1:ENST00000694995.1:ENST00000519143.6:ENST00000694994.1:ENST00000695297.1:ENST00000695296.1:ENST00000694993.1:ENST00000694992.1:ENST00000694991.1:ENST00000694999.1:ENST00000457646.9:ENST00000695404.1:ENST00000508863.6:ENST00000515404.5:ENST00000522404.5:ENST00000695000.1:ENST00000695001.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	40	2	2.3975	3.79476	5.19202	0.040266	0.0016671	0.161534	0.0369207
chrX	11425148	11425248	7761606	0	-	0.43	(0.408,0.44]	chrX	793522	894	INTRON	INTRON	ARHGAP6	ENSG00000047648.23	ENST00000380736.5:ENST00000337414.9:ENST00000495242.5:ENST00000489330.6:ENST00000380718.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	40	2	2.3975	3.79476	5.19202	0.040266	0.0016671	0.161534	0.0369207
chr12	123728209	123728309	5244240	0	+	0.4	(0.378,0.408]	chr12	498569	3	SS5_PROX	SS5_PROX:INTRON	ATP6V0A2	ENSG00000185344.15	ENST00000330342.8:ENST00000613625.5:ENST00000675344.1:ENST00000540368.6:ENST00000504192.2:ENST00000674794.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	39	2	2.71183	3.794725	4.87762	0.0170789	0.00553849	0.110899	0.0648867
chr18	169615	169714	6854938	0	+	0.383838	(0.378,0.408]	chr18	679508	24	INTRON	INTRON	USP14	ENSG00000101557.15	ENST00000582707.5:ENST00000400266.7:ENST00000261601.8:ENST00000578942.5:ENST00000383589.6:ENST00000583119.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	39	2	2.71183	3.794725	4.87762	0.0170789	0.00553849	0.110899	0.0648867
chr5	33444923	33445023	2335162	0	+	0.4	(0.378,0.408]	chr5	225401	2	SS3_PROX	SS3_PROX:INTRON	TARS1	ENSG00000113407.14	ENST00000502553.5:ENST00000514259.5:ENST00000502508.5:ENST00000508361.5:ENST00000265112.8:ENST00000455217.6:ENST00000507716.5:ENST00000509731.5:ENST00000505012.5:ENST00000513066.3:ENST00000627006.2:ENST00000626210.1:ENST00000506040.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	39	2	2.71183	3.794725	4.87762	0.0170789	0.00553849	0.110899	0.0648867
chr7	127906316	127906416	3404960	0	+	0.36	(0.35,0.378]	chr7	318161	11	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000465900.5:ENST00000486037.1:ENST00000484767.5:ENST00000492840.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	122	2	3.64198	3.79468	3.94738	2.06843e-4	3.10054e-5	0.0131276	0.00443764
chr1	50737862	50737962	450027	0	-	0.23	[0,0.28]	chr1	54237	316	INTRON	INTRON	FAF1	ENSG00000185104.21	ENST00000396153.7:ENST00000487898.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	64	2	2.33097	3.7945599999999997	5.25815	0.0158969	0.0066548	0.109464	0.0703807
chr7	98348551	98348650	3581426	0	-	0.242424	[0,0.28]	chr7	333573	279	INTRON	INTRON	BAIAP2L1	ENSG00000006453.14	ENST00000005260.9:ENST00000462558.5:ENST00000473569.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	64	2	2.33097	3.7945599999999997	5.25815	0.0158969	0.0066548	0.109464	0.0703807
chr12	118337033	118337133	5429932	0	-	0.33	(0.32,0.35]	chr12	518768	395	INTRON	INTRON	TAOK3	ENSG00000135090.14	ENST00000392533.8:ENST00000419821.6:ENST00000541186.5:ENST00000541878.5:ENST00000542902.5:ENST00000542532.5:ENST00000541786.5:ENST00000539872.5:ENST00000542692.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	43	2	3.13277	3.79453	4.45629	0.0246089	0.00458313	0.12011	0.0622676
chr12	123188096	123188196	5443600	0	-	0.35	(0.32,0.35]	chr12	520806	65	INTRON	INTRON	MPHOSPH9	ENSG00000051825.15	ENST00000606320.6:ENST00000541076.6:ENST00000545556.6:ENST00000302373.8:ENST00000539024.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	43	2	3.13277	3.79453	4.45629	0.0246089	0.00458313	0.12011	0.0622676
chr5	19120165	19120265	2570267	0	-	0.34	(0.32,0.35]	chr5	246210	815	INTRON	INTRON	ENSG00000249174	ENSG00000249174.1	ENST00000504827.1	lncRNA	lncRNA	lncRNA	lncRNA	1	43	2	3.13277	3.79453	4.45629	0.0246089	0.00458313	0.12011	0.0622676
chr7	131361045	131361144	3416774	0	+	0.323232	(0.32,0.35]	chr7	319187	327	INTRON	INTRON	MKLN1	ENSG00000128585.18	ENST00000421797.6:ENST00000416992.6:ENST00000429546.5:ENST00000446815.5:ENST00000494286.5:ENST00000352689.11:ENST00000494785.5:ENST00000458153.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	43	2	3.13277	3.79453	4.45629	0.0246089	0.00458313	0.12011	0.0622676
chr14	81476675	81476773	5937744	0	-	0.336735	(0.32,0.35]	chr14	564252	53	UTR3	UTR3:EXON_MRNA	SEL1L	ENSG00000071537.14	ENST00000336735.9	protein_coding	protein_coding	protein_coding	protein_coding	2	59	2	2.82385	3.79443	4.76501	0.0114287	0.00217392	0.0886611	0.043502
chr10	32317425	32317525	4591347	0	-	0.47	(0.44,0.476]	chr10	423379	111	INTRON	INTRON	EPC1	ENSG00000120616.16	ENST00000375110.6:ENST00000319778.11:ENST00000667706.1:ENST00000263062.8:ENST00000479380.2:ENST00000495790.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	51	2	2.39003	3.794415	5.1988	0.0106488	0.00151532	0.0915714	0.0352794
chr5	458225	458325	2313221	0	+	0.37	(0.35,0.378]	chr5	223778	2	SS5_PROX	SS5_PROX:INTRON	EXOC3	ENSG00000180104.16	ENST00000512944.6:ENST00000515601.6:ENST00000315013.9:ENST00000503889.2:ENST00000510028.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	41	2	2.48657	3.794415	5.10226	0.032907	0.00327038	0.145164	0.0508595
chr5	179718969	179719068	2560904	0	+	0.474747	(0.44,0.476]	chr5	244930	23	INTRON	INTRON	CANX	ENSG00000127022.16	ENST00000681674.1:ENST00000681712.1:ENST00000681903.1:ENST00000680406.1:ENST00000502296.6:ENST00000504734.5:ENST00000452673.6:ENST00000679719.1:ENST00000679523.1:ENST00000679395.1:ENST00000681504.1:ENST00000679642.1:ENST00000681894.1:ENST00000680504.1:ENST00000681265.1:ENST00000680894.1:ENST00000680812.1:ENST00000680614.1:ENST00000680985.1:ENST00000680837.1:ENST00000680827.1:ENST00000681576.1:ENST00000680984.1:ENST00000680042.1:ENST00000681762.1:ENST00000681476.1:ENST00000681072.1:ENST00000247461.9:ENST00000513246.6:ENST00000680618.1:ENST00000502673.6:ENST00000680092.1:ENST00000506654.6:ENST00000514032.5:ENST00000681733.1:ENST00000679471.1:ENST00000679527.1:ENST00000680006.1:ENST00000681398.1:ENST00000681431.1:ENST00000680013.1:ENST00000681076.1:ENST00000681168.1:ENST00000509563.2:ENST00000681342.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	51	2	2.39003	3.794415	5.1988	0.0106488	0.00151532	0.0915714	0.0352794
chrX	123647472	123647572	7878189	0	-	0.47	(0.44,0.476]	chrX	802527	17	INTRON	INTRON	THOC2	ENSG00000125676.20	ENST00000245838.13:ENST00000355725.8:ENST00000491737.5	protein_coding	protein_coding	protein_coding	protein_coding	2	51	2	2.39003	3.794415	5.1988	0.0106488	0.00151532	0.0915714	0.0352794
chr3	195542703	195542803	1896220	0	-	0.52	(0.515,0.57]	chr3	189757	4	SS5_PROX	SS5_PROX:INTRON	PPP1R2	ENSG00000184203.8	ENST00000618156.5:ENST00000438848.5:ENST00000413183.3:ENST00000625807.1:ENST00000462906.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	37	2	2.90311	3.7943949999999997	4.68568	0.0094233	0.00270027	0.0817766	0.0479115
chr8	90310167	90310267	3793195	0	+	0.23	[0,0.28]	chr8	351786	630	INTRON	INTRON	LINC00534	ENSG00000253394.7	ENST00000662145.1:ENST00000655523.1:ENST00000517400.6:ENST00000658299.1:ENST00000663329.1:ENST00000658342.1:ENST00000523283.6:ENST00000655219.1:ENST00000662692.1:ENST00000667296.1:ENST00000667565.1:ENST00000523406.2:ENST00000659030.1:ENST00000653734.1:ENST00000654785.1:ENST00000524361.5:ENST00000668745.1:ENST00000666641.2:ENST00000661519.1:ENST00000671657.1:ENST00000655123.1:ENST00000663098.1:ENST00000670903.1:ENST00000654946.1	lncRNA	lncRNA	lncRNA	lncRNA	2	71	2	2.02265	3.7943800000000003	5.56611	0.0449017	7.02173e-4	0.149888	0.0241881
chr22	19457770	19457870	7554679	0	-	0.47	(0.44,0.476]	chr22	772366	3	SS5_PROX	SS5_PROX:INTRON	UFD1	ENSG00000070010.19	ENST00000263202.15:ENST00000399523.5:ENST00000459854.5:ENST00000466373.1:ENST00000447868.5:ENST00000421968.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	55	2	2.13779	3.79438	5.45097	0.0264596	1.90652e-4	0.122506	0.0120089
chr8	37896375	37896474	3935914	0	-	0.464646	(0.44,0.476]	chr8	360576	184	INTRON	INTRON	RAB11FIP1	ENSG00000156675.16	ENST00000330843.9:ENST00000287263.8:ENST00000522727.5	protein_coding	protein_coding	protein_coding	protein_coding	2	55	2	2.13779	3.79438	5.45097	0.0264596	1.90652e-4	0.122506	0.0120089
chr10	21663843	21663943	4405719	0	+	0.37	(0.35,0.378]	chr10	406497	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	MLLT10	ENSG00000078403.17	ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000651298.1:ENST00000377059.7:ENST00000652258.1:ENST00000651382.1:ENST00000438473.6:ENST00000650921.1:ENST00000651405.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	54	2	2.23043	3.794355	5.35828	0.0187487	0.00135282	0.117523	0.0336321
chr7	107084788	107084888	3377568	0	+	0.52	(0.515,0.57]	chr7	316248	141	INTRON	INTRON	PRKAR2B	ENSG00000005249.13	ENST00000265717.5:ENST00000393613.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	136	2	2.54655	3.79421	5.04187	8.595e-4	4.59054e-8	0.0267428	8.84013e-5
chr6	160996969	160997069	3024542	0	+	0.34	(0.32,0.35]	chr6	282304	45	INTRON	INTRON	MAP3K4	ENSG00000085511.20	ENST00000366919.6:ENST00000392142.9:ENST00000542952.5:ENST00000366920.6:ENST00000348824.11:ENST00000544041.5:ENST00000490904.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	57	2	2.07985	3.7941900000000004	5.50853	0.0303092	0.0010959399999999999	0.143025	0.0304174
chr12	108714761	108714861	5406618	0	-	0.21	[0,0.28]	chr12	516035	118	INTRON	INTRON	CORO1C	ENSG00000110880.11	ENST00000261401.8:ENST00000541050.5:ENST00000549384.5:ENST00000550542.5:ENST00000552871.5:ENST00000551550.5:ENST00000546571.5:ENST00000551044.1:ENST00000551059.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	52	2	2.38757	3.79414	5.20071	0.0552962	0.00261806	0.165463	0.0470772
chr2	31992790	31992890	1090939	0	-	0.23	[0,0.28]	chr2	116913	296	INTRON	INTRON	MEMO1:DPY30	ENSG00000162959.14:ENSG00000162961.14	ENST00000295065.9:ENST00000446765.5:ENST00000404530.6:ENST00000490459.5:ENST00000426310.6:ENST00000413686.1:ENST00000407893.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	52	2	2.38757	3.79414	5.20071	0.0552962	0.00261806	0.165463	0.0470772
chr1	246488662	246488762	680537	0	-	0.31	(0.28,0.32]	chr1	79781	50	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000490107.6:ENST00000462422.5:ENST00000403792.7:ENST00000470863.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	59	2	2.24061	3.79413	5.34765	0.0194267	0.00287138	0.119831	0.0474836
chr5	54090949	54091049	2618716	0	-	0.28	[0,0.28]	chr5	248841	150	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	52	2	2.49527	3.79404	5.09281	0.0436497	0.00372534	0.14882	0.0561984
chr13	72735602	72735700	5509130	0	+	0.459184	(0.44,0.476]	chr13	527121	2	INTRON	INTRON	BORA	ENSG00000136122.18	ENST00000652266.1:ENST00000618209.5:ENST00000613797.4:ENST00000651477.1:ENST00000390667.11:ENST00000651376.1:ENST00000377814.6:ENST00000471712.5:ENST00000464754.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	85	2	3.43305	3.7940050000000003	4.15496	0.00159668	3.09831e-5	0.0364566	0.00443703
chr2	3475395	3475495	686725	0	+	0.31	(0.28,0.32]	chr2	80557	24	INTRON	INTRON	TRAPPC12	ENSG00000171853.16	ENST00000382110.6:ENST00000324266.10:ENST00000417243.5:ENST00000433382.5:ENST00000415624.5:ENST00000497597.5:ENST00000473348.5:ENST00000461577.5:ENST00000489032.5:ENST00000437733.5:ENST00000416918.5:ENST00000469400.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	49	2	2.82769	3.7939999999999996	4.76031	0.0169391	0.00656106	0.103888	0.0735539
chr7	135419957	135420056	3648058	0	-	0.515152	(0.476,0.515]	chr7	339173	43	INTRON	INTRON	CNOT4	ENSG00000080802.20	ENST00000541284.6:ENST00000451834.5:ENST00000423368.6:ENST00000361528.8:ENST00000414802.5:ENST00000428680.6:ENST00000315544.6	protein_coding	protein_coding	protein_coding	protein_coding	2	52	2	2.68023	3.79392	4.90761	0.00386428	0.00353671	0.0546236	0.0542786
chr10	12021763	12021862	4557570	0	-	0.353535	(0.35,0.378]	chr10	420618	72	INTRON	INTRON	UPF2	ENSG00000151461.20	ENST00000357604.10:ENST00000356352.6:ENST00000397053.6	protein_coding	protein_coding	protein_coding	protein_coding	1	45	2	3.49967	3.793915	4.08816	0.046021	9.80974e-4	0.149888	0.0287765
chr6	140520343	140520443	2971660	0	+	0.35	(0.32,0.35]	chr6	279019	2049	INTRON	INTRON	ENSG00000288714	ENSG00000288714.1	ENST00000684511.1	lncRNA	lncRNA	lncRNA	lncRNA	1	43	2	2.40308	3.793615	5.18415	0.0417732	0.00333629	0.161736	0.0512081
chrX	30830429	30830529	7777700	0	-	0.35	(0.32,0.35]	chrX	794865	31	UTR3	UTR3:EXON_MRNA	TAB3	ENSG00000157625.16	ENST00000378933.5:ENST00000288422.4:ENST00000378930.7:ENST00000378932.6	protein_coding	protein_coding	protein_coding	protein_coding	1	43	2	2.40308	3.793615	5.18415	0.0417732	0.00333629	0.161736	0.0512081
chr20	41105448	41105547	7274291	0	+	0.373737	(0.35,0.378]	chr20	739288	6	INTRON	INTRON	TOP1	ENSG00000198900.7	ENST00000361337.3:ENST00000681113.1:ENST00000681058.1:ENST00000681392.1:ENST00000681884.1:ENST00000680945.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	40	2	2.79643	3.79361	4.79079	0.013543	0.00846427	0.101363	0.0776969
chr6	24708276	24708376	3070614	0	-	0.36	(0.35,0.378]	chr6	285347	1	SS5_PROX	SS5_PROX:INTRON	C6orf62	ENSG00000112308.13	ENST00000378119.9:ENST00000378102.3	protein_coding	protein_coding	protein_coding	protein_coding	1	40	2	2.79643	3.79361	4.79079	0.013543	0.00846427	0.101363	0.0776969
chr15	22516475	22516575	5974732	0	+	0.55	(0.515,0.57]	chr15	568078	2	SS3_PROX	SS3_PROX:INTRON	HERC2P2	ENSG00000276550.5	ENST00000613386.4	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	6	83	2	1.80295	3.79358	5.78421	0.00965183	1.63043e-5	0.0826279	0.00304426
chr16	70547575	70547673	6385387	0	+	0.5	(0.476,0.515]	chr16	613923	27	INTRON	INTRON	SF3B3	ENSG00000189091.13	ENST00000302516.10:ENST00000572365.1:ENST00000567635.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	52	2	2.13304	3.79347	5.4539	0.024866	5.16081e-4	0.132101	0.0208667
chr7	133640837	133640937	3422059	0	+	0.44	(0.408,0.44]	chr7	319395	103	INTRON	INTRON	EXOC4	ENSG00000131558.15	ENST00000253861.5:ENST00000479839.6:ENST00000483800.5:ENST00000469115.5:ENST00000489931.5:ENST00000482089.5:ENST00000460346.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	52	2	2.14732	3.79336	5.4394	0.0237354	6.50925e-4	0.129075	0.0232863
chr16	9096894	9096994	6285424	0	+	0.36	(0.35,0.378]	chr16	601924	35	INTRON	INTRON	C16orf72	ENSG00000182831.12	ENST00000327827.12:ENST00000574285.2	protein_coding	protein_coding	protein_coding	protein_coding	4	157	2	3.44191	3.7933500000000002	4.14479	3.94692e-5	3.64316e-5	0.00511874	0.00509511
chr1	169477326	169477412	582583	0	-	0.5	(0.476,0.515]	chr1	70213	3	CDS	CDS:EXON_MRNA:INTRON	SLC19A2	ENSG00000117479.15	ENST00000236137.10:ENST00000367804.4:ENST00000646596.1	protein_coding	protein_coding	protein_coding	protein_coding	4	71	2	2.17892	3.793305	5.40769	0.0046578	6.23078e-4	0.0629753	0.0229151
chr2	112650579	112650676	852109	0	+	0.525773	(0.515,0.57]	chr2	95574	25	INTRON	INTRON	SLC20A1	ENSG00000144136.11	ENST00000272542.8:ENST00000423633.5:ENST00000498224.5:ENST00000433924.5:ENST00000456264.5:ENST00000413135.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	352	2	3.67064	3.793285	3.91593	1.07984e-7	4.99082e-9	1.50191e-4	2.29046e-5
chr3	15046886	15046985	1372790	0	+	0.515152	(0.476,0.515]	chr3	144690	40	UTR3	UTR3:EXON_MRNA:INTRON	NR2C2	ENSG00000177463.16	ENST00000425241.6:ENST00000617312.4:ENST00000439011.5:ENST00000413194.1	protein_coding	protein_coding	protein_coding	protein_coding	4	135	2	3.0627	3.7932699999999997	4.52384	2.02307e-4	3.3232e-6	0.0129814	0.00118585
chr10	86809383	86809483	4479925	0	+	0.47	(0.44,0.476]	chr10	412292	521	INTRON	INTRON	BMPR1A	ENSG00000107779.14	ENST00000638429.1:ENST00000372037.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	41	2	2.46135	3.79324	5.12513	0.0374637	7.96486e-4	0.140008	0.0258804
chr11	58581500	58581598	4793766	0	+	0.5	(0.476,0.515]	chr11	443832	15	INTRON	INTRON	ZFP91	ENSG00000186660.15	ENST00000316059.7	protein_coding	protein_coding	protein_coding	protein_coding	1	41	2	2.40608	3.793235	5.18039	0.0425709	6.58744e-4	0.148082	0.0232396
chr7	157366101	157366201	3455595	0	+	0.48	(0.476,0.515]	chr7	323066	2	SS3_PROX	SS3_PROX:INTRON	DNAJB6	ENSG00000105993.15	ENST00000441561.5:ENST00000429029.6:ENST00000262177.9:ENST00000486083.6:ENST00000417758.5:ENST00000459889.5:ENST00000443280.5:ENST00000488001.5:ENST00000441291.5:ENST00000437030.5:ENST00000412557.5:ENST00000453383.5:ENST00000634080.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	41	2	2.40608	3.793235	5.18039	0.0425709	6.58744e-4	0.148082	0.0232396
chr1	114733455	114733543	528377	0	-	0.522727	(0.515,0.57]	chr1	62295	2	SS5_PROX	SS5_PROX:INTRON	CSDE1	ENSG00000009307.17	ENST00000339438.10:ENST00000610726.5:ENST00000692719.1:ENST00000358528.9:ENST00000688211.1:ENST00000438362.7:ENST00000689217.1:ENST00000689989.1:ENST00000686025.1:ENST00000686781.1:ENST00000686123.1:ENST00000684913.1:ENST00000686235.1:ENST00000693467.1:ENST00000689732.1:ENST00000693644.1:ENST00000687759.1:ENST00000692044.1:ENST00000689885.1:ENST00000691403.1:ENST00000692629.1:ENST00000690013.1:ENST00000690420.1:ENST00000692950.1:ENST00000686667.1:ENST00000691032.1:ENST00000685676.1:ENST00000529046.6:ENST00000692672.1:ENST00000691377.1:ENST00000688611.1:ENST00000690207.1:ENST00000693311.1:ENST00000689510.1:ENST00000686581.1:ENST00000689727.1:ENST00000690784.1:ENST00000483030.2:ENST00000687548.1:ENST00000261443.9:ENST00000530886.5:ENST00000369530.5:ENST00000534699.5:ENST00000524652.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	169	2	2.79153	3.79322	4.79491	6.28135e-4	3.12097e-9	0.023031	1.64794e-5
chr11	76865440	76865539	4836816	0	+	0.343434	(0.32,0.35]	chr11	451187	40	INTRON	INTRON	ACER3	ENSG00000078124.13	ENST00000679754.1:ENST00000534206.5:ENST00000679866.1:ENST00000680842.1:ENST00000681257.1:ENST00000681354.1:ENST00000681732.1:ENST00000680583.1:ENST00000532485.6:ENST00000681375.1:ENST00000681004.1:ENST00000525194.5:ENST00000525861.5:ENST00000530182.6:ENST00000531461.5:ENST00000681955.1:ENST00000681411.1:ENST00000679611.1:ENST00000679924.1:ENST00000526597.5:ENST00000681251.1:ENST00000530334.6:ENST00000533873.1:ENST00000531352.5:ENST00000278544.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	42	2	2.96746	3.793175	4.61889	0.0166646	0.00815799	0.102621	0.0810802
chr11	68513731	68513830	4817864	0	+	0.30303	(0.28,0.32]	chr11	448913	81	INTRON	INTRON	PPP6R3	ENSG00000110075.15	ENST00000530427.5:ENST00000528635.5:ENST00000529907.5:ENST00000533127.5:ENST00000534534.5:ENST00000529344.5:ENST00000524845.5:ENST00000393800.7:ENST00000265637.8:ENST00000524904.5:ENST00000393801.7:ENST00000265636.9:ENST00000529710.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	105	2	3.63276	3.793155	3.95355	0.00114475	1.55324e-4	0.0308149	0.0106835
chr21	42867379	42867478	7467788	0	-	0.464646	(0.44,0.476]	chr21	760973	34	INTRON	INTRON	WDR4	ENSG00000160193.12	ENST00000330317.6:ENST00000476326.5:ENST00000398208.3:ENST00000492742.5:ENST00000479429.5:ENST00000463902.5:ENST00000470658.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	190	2	2.48496	3.793105	5.10125	3.22248e-4	1.90755e-7	0.0159645	2.16441e-4
chr1	113901483	113901568	526645	0	-	0.388235	(0.378,0.408]	chr1	62022	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	AP4B1	ENSG00000134262.13	ENST00000369569.6:ENST00000256658.8:ENST00000369567.5:ENST00000484201.5:ENST00000369564.5:ENST00000489499.5:ENST00000432415.5:ENST00000489092.5:ENST00000369571.2:ENST00000472122.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	42	2	2.53503	3.79297	5.05091	0.0319942	0.00118558	0.13174	0.031662
chr10	124773775	124773875	4712364	0	-	0.38	(0.378,0.408]	chr10	434810	78	INTRON	INTRON	EEF1AKMT2	ENSG00000203791.15	ENST00000652548.1:ENST00000466270.5:ENST00000368836.7:ENST00000464099.5:ENST00000498770.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	42	2	2.53503	3.79297	5.05091	0.0319942	0.00118558	0.13174	0.031662
chr13	95107944	95108043	5637919	0	-	0.393939	(0.378,0.408]	chr13	537050	114	INTRON	INTRON	ABCC4	ENSG00000125257.16	ENST00000645237.2:ENST00000643051.1:ENST00000643842.1:ENST00000646439.1:ENST00000644880.1:ENST00000643816.1:ENST00000536256.3:ENST00000643556.1:ENST00000629385.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	42	2	2.53503	3.79297	5.05091	0.0319942	0.00118558	0.13174	0.031662
chr3	56613750	56613850	1434887	0	+	0.4	(0.378,0.408]	chr3	151465	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	CCDC66	ENSG00000180376.17	ENST00000422222.5:ENST00000394672.8:ENST00000326595.11:ENST00000471681.5:ENST00000341455.10:ENST00000484623.5:ENST00000468108.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	42	2	2.53503	3.79297	5.05091	0.0319942	0.00118558	0.13174	0.031662
chr9	4723025	4723125	4228747	0	-	0.38	(0.378,0.408]	chr9	388785	4	SS3_PROX	SS3_PROX:INTRON	AK3	ENSG00000147853.17	ENST00000381809.8:ENST00000611749.4:ENST00000359883.6:ENST00000447596.4	protein_coding	protein_coding	protein_coding	protein_coding	1	42	2	2.53503	3.79297	5.05091	0.0319942	0.00118558	0.13174	0.031662
chr10	132548962	132549062	4537790	0	+	0.54	(0.515,0.57]	chr10	418936	104	INTRON	INTRON	INPP5A	ENSG00000068383.19	ENST00000368594.8:ENST00000368593.7:ENST00000423490.5	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	2.98677	3.792955	4.59914	0.00632549	0.00616166	0.0722266	0.0676501
chr1	231261749	231261844	337228	0	+	0.305263	(0.28,0.32]	chr1	39197	7	INTRON	INTRON	GNPAT	ENSG00000116906.13	ENST00000436239.5:ENST00000366647.9:ENST00000644483.1:ENST00000416000.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	65	2	2.14002	3.792925	5.44583	0.0304107	5.8721e-4	0.130461	0.0220073
chr19	52712944	52713039	7207258	0	-	0.473684	(0.44,0.476]	chr19	731448	13	INTRON	INTRON	ZNF611	ENSG00000213020.10	ENST00000540744.5:ENST00000543227.5:ENST00000453741.6:ENST00000652185.1:ENST00000595001.5:ENST00000602162.5:ENST00000319783.5:ENST00000595798.5:ENST00000601249.5:ENST00000601643.5:ENST00000600943.5:ENST00000598639.5:ENST00000597343.6:ENST00000598723.5:ENST00000640952.1:ENST00000596702.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	41	2	2.80275	3.79284	4.78293	0.0146513	0.00292033	0.0982604	0.0494641
chr12	53287012	53287093	5142220	0	+	0.382716	(0.378,0.408]	chr12	485204	1	SS5_PROX	SS5_PROX:INTRON	ESPL1	ENSG00000135476.12	ENST00000257934.9:ENST00000552671.5:ENST00000535123.6:ENST00000553016.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	42	2	2.66785	3.7928050000000004	4.91776	0.0224639	0.00196368	0.11692	0.0411469
chr1	246061963	246062063	676251	0	-	0.3	(0.28,0.32]	chr1	79717	85	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000391836.3:ENST00000464398.1:ENST00000453676.5:ENST00000462422.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	45	2	2.38101	3.792805	5.2046	0.0456017	0.00448664	0.164236	0.0593175
chr3	177194807	177194905	1872423	0	-	0.336735	(0.32,0.35]	chr3	187442	8	INTRON	INTRON	TBL1XR1	ENSG00000177565.18	ENST00000457928.7:ENST00000430069.5:ENST00000673974.1:ENST00000352800.10:ENST00000422442.6:ENST00000428970.5:ENST00000424913.5:ENST00000437738.5:ENST00000431421.5:ENST00000635794.1:ENST00000630796.2:ENST00000450267.5:ENST00000630833.2:ENST00000431674.5:ENST00000422066.5:ENST00000443315.5:ENST00000627825.2:ENST00000427349.5:ENST00000413084.5:ENST00000491623.2:ENST00000637544.1:ENST00000636187.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	68	2	2.3011	3.7928	5.2845	0.00617969	0.00240071	0.0713552	0.0440612
chr17	75900097	75900174	6839053	0	-	0.506494	(0.476,0.515]	chr17	676123	4	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MRPL38	ENSG00000204316.13	ENST00000309352.4:ENST00000480203.5:ENST00000588620.5:ENST00000477371.5:ENST00000477023.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	41	2	2.8863	3.7927400000000002	4.69918	0.0111679	0.00400966	0.0877435	0.057767
chr19	13134300	13134400	7022810	0	+	0.48	(0.476,0.515]	chr19	698372	20	INTRON	INTRON	NACC1	ENSG00000160877.6	ENST00000586171.2:ENST00000292431.5	protein_coding	protein_coding	protein_coding	protein_coding	1	41	2	2.8863	3.7927400000000002	4.69918	0.0111679	0.00400966	0.0877435	0.057767
chr17	32371037	32371135	6598204	0	+	0.346939	(0.32,0.35]	chr17	641946	14	UTR3	UTR3:EXON_MRNA:INTRON	ZNF207	ENSG00000010244.19	ENST00000394670.9:ENST00000577908.5:ENST00000581531.5:ENST00000579810.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	294	2	2.97807	3.7927350000000004	4.6074	5.68797e-5	6.54393e-8	0.00655354	1.10429e-4
chr1	23287288	23287388	399169	0	-	0.55	(0.515,0.57]	chr1	47822	61	EXON_LNCRNA	EXON_LNCRNA	LINC01355	ENSG00000261326.4	ENST00000655082.1:ENST00000666981.1	lncRNA	lncRNA	lncRNA	lncRNA	1	35	2	2.74772	3.7926800000000003	4.83764	0.0142192	0.00279527	0.103638	0.0469265
chr17	51094984	51095084	6796759	0	-	0.57	(0.515,0.57]	chr17	671024	149	INTRON	INTRON	SPAG9	ENSG00000008294.22	ENST00000262013.12:ENST00000505279.5:ENST00000357122.8	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	2.74772	3.7926800000000003	4.83764	0.0142192	0.00279527	0.103638	0.0469265
chr5	55404924	55405005	2356081	0	+	0.518519	(0.515,0.57]	chr5	227248	1	SS3_PROX	SS3_PROX:INTRON	MTREX	ENSG00000039123.16	ENST00000230640.10:ENST00000506750.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	35	2	2.74772	3.7926800000000003	4.83764	0.0142192	0.00279527	0.103638	0.0469265
chr4	23034254	23034352	1928466	0	+	0.326531	(0.32,0.35]	chr4	193943	10	INTRON	INTRON	ENSG00000248837	ENSG00000248837.7	ENST00000659942.1:ENST00000655325.1:ENST00000655182.1:ENST00000660103.1:ENST00000506425.2:ENST00000652324.1:ENST00000653008.1:ENST00000654546.1:ENST00000666412.1:ENST00000511453.5:ENST00000667179.1:ENST00000655768.1:ENST00000661585.1:ENST00000660296.1:ENST00000663529.1:ENST00000653872.1:ENST00000660370.1:ENST00000667156.1:ENST00000658109.1:ENST00000653188.1:ENST00000662431.1:ENST00000654588.1:ENST00000666579.1:ENST00000503017.2:ENST00000665739.1:ENST00000671537.1:ENST00000663348.1	lncRNA	lncRNA	lncRNA	lncRNA	1	42	2	2.56618	3.792675	5.01917	0.0274185	0.0055659	0.136498	0.0648867
chr6	157673615	157673714	3014483	0	+	0.343434	(0.32,0.35]	chr6	281322	6	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ZDHHC14	ENSG00000175048.17	ENST00000414563.6:ENST00000359775.10:ENST00000341375.12:ENST00000523706.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	42	2	2.56618	3.792675	5.01917	0.0274185	0.0055659	0.136498	0.0648867
chr17	76268716	76268813	6677170	0	+	0.43299	(0.408,0.44]	chr17	652074	24	INTRON	INTRON	UBALD2	ENSG00000185262.9	ENST00000327490.8:ENST00000587913.1:ENST00000589240.1	protein_coding	protein_coding	protein_coding	protein_coding	7	187	2	2.91766	3.7925899999999997	4.66752	2.19663e-5	3.26573e-6	0.00364987	0.00128387
chr12	57749941	57750004	5339751	0	-	0.47619	(0.44,0.476]	chr12	510916	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CDK4	ENSG00000135446.17	ENST00000312990.10:ENST00000257904.11:ENST00000549606.5:ENST00000553237.5:ENST00000546489.5:ENST00000551888.5:ENST00000547281.5:ENST00000550419.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	67	2	2.18344	3.79248	5.40152	0.0102102	2.39829e-4	0.0850389	0.0136403
chr6	143172278	143172378	2976302	0	+	0.34	(0.32,0.35]	chr6	279149	67	INTRON	INTRON	AIG1	ENSG00000146416.19	ENST00000367601.8:ENST00000447498.5:ENST00000646199.1:ENST00000357847.9:ENST00000629020.2:ENST00000275235.8:ENST00000494282.6:ENST00000458219.1:ENST00000470265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	68	2	1.88255	3.792475	5.7024	0.0269187	5.25722e-4	0.135288	0.0210958
chr10	96583972	96584071	4674405	0	-	0.414141	(0.408,0.44]	chr10	430733	66	INTRON	INTRON	TM9SF3	ENSG00000077147.16	ENST00000371142.9:ENST00000649367.1:ENST00000443638.1:ENST00000475401.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	54	2	2.906	3.79247	4.67894	0.0087648	0.00131817	0.0788605	0.0333932
chr19	19501780	19501868	7036323	0	+	0.409091	(0.408,0.44]	chr19	701509	4	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GATAD2A	ENSG00000167491.18	ENST00000360315.7:ENST00000609040.5:ENST00000683918.1:ENST00000404158.5:ENST00000358713.7:ENST00000418032.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	41	2	2.58624	3.7923050000000003	4.99837	0.0273686	0.00131369	0.123904	0.0333932
chr5	132905003	132905103	2724676	0	-	0.42	(0.408,0.44]	chr5	256321	2	INTRON	INTRON	AFF4	ENSG00000072364.13	ENST00000265343.10:ENST00000378595.7:ENST00000425658.1:ENST00000378593.6:ENST00000477369.5:ENST00000491831.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	41	2	2.6542	3.7922200000000004	4.93024	0.0227514	0.00170369	0.117618	0.0381936
chr16	312950	313049	6426458	0	-	0.525253	(0.515,0.57]	chr16	617494	25	INTRON	INTRON	AXIN1	ENSG00000103126.15	ENST00000262320.8:ENST00000461023.5:ENST00000354866.7:ENST00000481769.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	78	2	1.97184	3.79219	5.61254	0.0041442	1.10757e-4	0.0589266	0.00945003
chr7	100679080	100679174	3365286	0	+	0.340426	(0.32,0.35]	chr7	314897	4	UTR3	UTR3:EXON_MRNA	GNB2	ENSG00000172354.10	ENST00000303210.9:ENST00000436220.5:ENST00000424361.5:ENST00000419828.5:ENST00000427895.5:ENST00000393926.5:ENST00000393924.1:ENST00000469287.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	56	2	2.45306	3.792145	5.13123	0.00916394	0.00394704	0.0855292	0.0548259
chr1	2275424	2275524	2638	0	+	0.59	(0.57,1]	chr1	557	270	INTRON	INTRON	SKI	ENSG00000157933.10	ENST00000378536.5:ENST00000508416.1:ENST00000478223.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	41	2	2.30825	3.7921300000000002	5.27601	0.00499769	3.73525e-5	0.0617433	0.00489903
chr1	168019044	168019144	249323	0	+	0.5	(0.476,0.515]	chr1	29609	1	SS3_PROX	SS3_PROX:INTRON	DCAF6	ENSG00000143164.16	ENST00000432587.6:ENST00000367843.7:ENST00000470721.5:ENST00000367840.4:ENST00000312263.10:ENST00000460432.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	272	2	3.63347	3.79204	3.95061	9.80851e-7	2.97863e-7	6.14551e-4	2.73247e-4
chr3	15773278	15773377	1623573	0	-	0.353535	(0.35,0.378]	chr3	168009	66	INTRON	INTRON	ANKRD28	ENSG00000206560.12	ENST00000399451.6:ENST00000624145.3:ENST00000683139.1:ENST00000412318.5:ENST00000497037.5:ENST00000451422.1:ENST00000498524.5:ENST00000439830.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	40	2	2.86451	3.79202	4.71953	0.0109111	0.0103314	0.0923273	0.0850389
chrX	44940383	44940483	7649274	0	+	0.37	(0.35,0.378]	chrX	782726	660	INTRON	INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000675440.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000621147.5:ENST00000475233.1:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	40	2	2.86451	3.79202	4.71953	0.0109111	0.0103314	0.0923273	0.0850389
chr16	339654	339753	6426726	0	-	0.414141	(0.408,0.44]	chr16	617500	246	INTRON	INTRON	AXIN1	ENSG00000103126.15	ENST00000262320.8:ENST00000461023.5:ENST00000354866.7:ENST00000481769.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	51	2	2.44674	3.79188	5.13702	0.00868283	0.00202889	0.0842798	0.04086
chr18	36885716	36885814	6893403	0	+	0.479592	(0.476,0.515]	chr18	683220	1	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	KIAA1328	ENSG00000150477.15	ENST00000592611.5:ENST00000280020.10:ENST00000592521.5:ENST00000590617.5:ENST00000587139.5:ENST00000591619.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	51	2	2.37731	3.79188	5.20645	0.0111793	0.00136049	0.0937192	0.0336321
chr1	45907188	45907288	94850	0	+	0.36	(0.35,0.378]	chr1	12702	244	INTRON	INTRON	MAST2	ENSG00000086015.23	ENST00000470809.1:ENST00000361297.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	40	2	2.72498	3.7918399999999997	4.8587	0.0168499	0.00695662	0.11068	0.0718189
chr10	867829	867928	4541942	0	-	0.353535	(0.35,0.378]	chr10	419274	32	INTRON	INTRON	LARP4B	ENSG00000107929.16	ENST00000316157.8:ENST00000690516.1:ENST00000689323.1:ENST00000476529.5:ENST00000406525.6:ENST00000481118.1:ENST00000412411.1:ENST00000693234.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	40	2	2.72498	3.7918399999999997	4.8587	0.0168499	0.00695662	0.11068	0.0718189
chr13	113507253	113507353	5549333	0	+	0.36	(0.35,0.378]	chr13	530299	13	INTRON	INTRON	TMCO3	ENSG00000150403.18	ENST00000434316.7:ENST00000375391.5:ENST00000474393.5:ENST00000462877.5	protein_coding	protein_coding	protein_coding	protein_coding	1	40	2	2.72498	3.7918399999999997	4.8587	0.0168499	0.00695662	0.11068	0.0718189
chr5	146146586	146146685	2747036	0	-	0.353535	(0.35,0.378]	chr5	258826	20	EXON_MRNA	EXON_MRNA:INTRON	LARS1	ENSG00000133706.19	ENST00000674174.1:ENST00000674170.1:ENST00000674479.1:ENST00000674309.1:ENST00000674218.1:ENST00000674467.1:ENST00000674290.1:ENST00000674447.1:ENST00000674270.1:ENST00000674383.1:ENST00000674191.1:ENST00000674158.1:ENST00000394434.7:ENST00000674398.1:ENST00000674277.1:ENST00000274562.13:ENST00000510191.5:ENST00000674310.1:ENST00000512412.2:ENST00000508667.5:ENST00000507095.1:ENST00000674417.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	40	2	2.72498	3.7918399999999997	4.8587	0.0168499	0.00695662	0.11068	0.0718189
chr6	7601824	7601924	2800252	0	+	0.41	(0.408,0.44]	chr6	263926	3	SS5_PROX	SS5_PROX:INTRON	SNRNP48	ENSG00000168566.13	ENST00000342415.6:ENST00000634363.1:ENST00000496946.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	51	2	2.39162	3.7918200000000004	5.19202	0.0105837	0.0016671	0.0911864	0.0369207
chr2	10149430	10149530	690997	0	+	0.3	(0.28,0.32]	chr2	81105	34	INTRON	INTRON	RRM2	ENSG00000171848.16	ENST00000641498.1:ENST00000646978.1:ENST00000381786.7	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	2	105	2	3.68544	3.7916	3.89776	9.30275e-4	2.03846e-4	0.0279637	0.0124395
chr3	150557384	150557484	1534128	0	+	0.44	(0.408,0.44]	chr3	159843	4	SS3_PROX	SS3_PROX:INTRON	EIF2A	ENSG00000144895.12	ENST00000463863.5:ENST00000487799.5:ENST00000494558.5:ENST00000474505.5:ENST00000460851.6:ENST00000406576.7:ENST00000482093.5:ENST00000469331.1:ENST00000273435.9:ENST00000490505.5:ENST00000462221.5:ENST00000477551.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	42	2	3.46104	3.791455	4.12187	0.0354689	0.00105552	0.137535	0.0299229
chr14	96565738	96565837	5810836	0	+	0.363636	(0.35,0.378]	chr14	550989	8	UTR3	UTR3:EXON_MRNA	PAPOLA	ENSG00000090060.19	ENST00000216277.13	protein_coding	protein_coding	protein_coding	protein_coding	5	83	2	2.00723	3.791435	5.57564	0.00607439	5.93654e-4	0.0703994	0.0225024
chr1	35097966	35098066	68098	0	+	0.29	(0.28,0.32]	chr1	8681	4	SS5_PROX	SS5_PROX:INTRON	ZMYM1	ENSG00000197056.11	ENST00000650449.1:ENST00000611874.4:ENST00000417119.5:ENST00000359858.9:ENST00000488455.5:ENST00000373330.1:ENST00000373329.5:ENST00000475654.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	59	2	2.42868	3.79113	5.15358	0.0105331	0.0052282	0.0908969	0.0633615
chr13	48977117	48977217	5487004	0	+	0.35	(0.32,0.35]	chr13	525602	2	SS5_PROX	SS5_PROX:INTRON	FNDC3A	ENSG00000102531.16	ENST00000492622.6:ENST00000378383.5:ENST00000541916.5:ENST00000484074.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	58	2	2.7493	3.791085	4.83287	0.0095071	0.00296357	0.0817766	0.0500135
chr2	187550612	187550712	1289488	0	-	0.26	[0,0.28]	chr2	135627	56	INTRON	INTRON	TFPI	ENSG00000003436.16	ENST00000233156.9:ENST00000409676.5:ENST00000339091.8:ENST00000421427.5:ENST00000437725.5:ENST00000453013.5:ENST00000417013.5:ENST00000420747.1	protein_coding	protein_coding	protein_coding	protein_coding	4	90	2	1.49274	3.791015	6.08929	0.0592697	4.45295e-4	0.189982	0.0194896
chr6	28592570	28592666	3075120	0	-	0.3125	(0.28,0.32]	chr6	285896	17	INTRON	INTRON	ZBED9	ENSG00000232040.4	ENST00000646382.1:ENST00000530247.1:ENST00000524745.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	44	2	2.91832	3.7909550000000003	4.66359	0.0193496	0.0102484	0.108861	0.089002
chr17	49039371	49039456	6625034	0	+	0.352941	(0.35,0.378]	chr17	646633	6	INTRON	INTRON	IGF2BP1	ENSG00000159217.10	ENST00000290341.8:ENST00000431824.2	protein_coding	protein_coding	protein_coding	protein_coding	2	91	2	3.61133	3.790865	3.9704	9.14099e-4	1.01653e-4	0.0278396	0.00850967
chr1	180178195	180178293	269327	0	+	0.520408	(0.515,0.57]	chr1	31559	18	INTRON	INTRON	QSOX1	ENSG00000116260.17	ENST00000367602.8:ENST00000392029.6:ENST00000367600.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	49	2	2.32967	3.79075	5.25183	0.0133671	2.6074e-4	0.0946278	0.014326
chr19	10366236	10366316	7135767	0	-	0.525	(0.515,0.57]	chr19	719496	4	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TYK2	ENSG00000105397.14	ENST00000264818.10:ENST00000525621.6:ENST00000524462.5:ENST00000529370.5	protein_coding	protein_coding	protein_coding	protein_coding	2	49	2	2.32967	3.79075	5.25183	0.0133671	2.6074e-4	0.0946278	0.014326
chr10	69133247	69133347	4444641	0	+	0.3	(0.28,0.32]	chr10	410022	2	SS5_PROX	SS5_PROX:INTRON	VPS26A	ENSG00000122958.15	ENST00000373382.5:ENST00000395098.5:ENST00000489656.5:ENST00000263559.11:ENST00000497564.5:ENST00000490696.5:ENST00000467852.1:ENST00000489794.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	106	2	3.40041	3.79066	4.18091	0.00273088	4.86075e-5	0.0467642	0.00568992
chr12	11037870	11037969	5268169	0	-	0.454545	(0.44,0.476]	chr12	502239	26	INTRON	INTRON	ENSG00000275778:PRH1	ENSG00000275778.2:ENSG00000231887.8	ENST00000536668.2:ENST00000535024.6:ENST00000539853.5:ENST00000541977.5:ENST00000536086.2:ENST00000534923.1:ENST00000541456.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	55	2	2.33899	3.79055	5.24211	0.0142027	4.87398e-4	0.0959987	0.0199652
chr5	54090251	54090351	2618709	0	-	0.32	(0.28,0.32]	chr5	248841	143	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	71	2	2.14534	3.79052	5.4357	0.0117054	0.00215368	0.0962115	0.0417866
chr18	51049737	51049824	6901821	0	+	0.287356	(0.28,0.32]	chr18	683861	3	SS5_PROX	SS5_PROX:INTRON	SMAD4	ENSG00000141646.15	ENST00000398417.6:ENST00000342988.8:ENST00000592911.5:ENST00000611848.2:ENST00000588745.5:ENST00000592186.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	44	2	2.53522	3.790505	5.04579	0.0310424	0.00714672	0.143457	0.0723634
chr2	158529780	158529880	897868	0	+	0.32	(0.28,0.32]	chr2	99341	711	INTRON	INTRON	PKP4	ENSG00000144283.23	ENST00000389759.8:ENST00000426248.7:ENST00000389757.7:ENST00000457109.5:ENST00000452162.5:ENST00000411900.5:ENST00000421462.5:ENST00000462335.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	44	2	2.53522	3.790505	5.04579	0.0310424	0.00714672	0.143457	0.0723634
chr8	103406148	103406247	4013623	0	-	0.313131	(0.28,0.32]	chr8	367392	9	INTRON	INTRON	SLC25A32	ENSG00000164933.12	ENST00000521645.5:ENST00000523256.6:ENST00000297578.9:ENST00000523866.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	44	2	2.53522	3.790505	5.04579	0.0310424	0.00714672	0.143457	0.0723634
chr5	71475073	71475172	2383772	0	+	0.40404	(0.378,0.408]	chr5	229887	42	INTRON	INTRON	BDP1	ENSG00000145734.20	ENST00000358731.9:ENST00000508917.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	63	2	2.35168	3.79046	5.22924	0.0046563	0.00172721	0.0629753	0.0374701
chr11	3366349	3366448	4893719	0	-	0.323232	(0.32,0.35]	chr11	458671	39	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	ZNF195	ENSG00000005801.18	ENST00000528796.5:ENST00000399602.9:ENST00000354599.10:ENST00000343338.11:ENST00000620374.4:ENST00000649622.1:ENST00000429541.6:ENST00000005082.13:ENST00000526601.5:ENST00000438262.6:ENST00000528410.5:ENST00000528218.5:ENST00000529789.5:ENST00000525313.6:ENST00000533036.5:ENST00000529228.5:ENST00000529678.5:ENST00000528636.1:ENST00000427810.6:ENST00000534569.5:ENST00000524857.5:ENST00000530643.5:ENST00000618467.4:ENST00000330692.11	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	108	2	1.81227	3.790435	5.7686	0.0125937	8.9843e-5	0.0926667	0.0079464
chr14	73717960	73718058	5920166	0	-	0.581633	(0.57,1]	chr14	562290	30	UTR3	UTR3:EXON_MRNA	MIDEAS	ENSG00000156030.14	ENST00000394071.6:ENST00000423556.7:ENST00000476562.5:ENST00000286523.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	35	2	2.80351	3.7904050000000002	4.7773	0.00172505	5.07088e-4	0.0374701	0.0202328
chr3	15792228	15792328	1623764	0	-	0.39	(0.378,0.408]	chr3	168013	102	INTRON	INTRON	ANKRD28	ENSG00000206560.12	ENST00000399451.6:ENST00000624145.3:ENST00000683139.1:ENST00000412318.5:ENST00000497037.5:ENST00000451422.1:ENST00000498524.5:ENST00000439830.5:ENST00000461696.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	40	2	2.45932	3.7903	5.12128	0.0346754	0.00251746	0.148144	0.0446195
chr3	171306662	171306762	1865911	0	-	0.4	(0.378,0.408]	chr3	186980	781	INTRON	INTRON	TNIK	ENSG00000154310.17	ENST00000436636.7:ENST00000341852.10:ENST00000284483.12:ENST00000475336.5:ENST00000357327.9:ENST00000460047.5:ENST00000488470.5:ENST00000470834.5	protein_coding	protein_coding	protein_coding	protein_coding	1	40	2	2.45932	3.7903	5.12128	0.0346754	0.00251746	0.148144	0.0446195
chr3	185669553	185669652	1884781	0	-	0.383838	(0.378,0.408]	chr3	188520	108	INTRON	INTRON	IGF2BP2	ENSG00000073792.16	ENST00000382199.7:ENST00000346192.7:ENST00000457616.6:ENST00000421047.3:ENST00000494906.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	40	2	2.45932	3.7903	5.12128	0.0346754	0.00251746	0.148144	0.0446195
chr7	22862279	22862379	3288769	0	+	0.39	(0.378,0.408]	chr7	305440	8	INTRON	INTRON	SNHG26	ENSG00000228649.10	ENST00000656301.1:ENST00000691516.1:ENST00000685098.1:ENST00000689892.1	lncRNA	lncRNA	lncRNA	lncRNA	1	40	2	2.45932	3.7903	5.12128	0.0346754	0.00251746	0.148144	0.0446195
chr19	1639977	1640076	7112988	0	-	0.424242	(0.408,0.44]	chr19	714651	72	INTRON	INTRON	TCF3	ENSG00000071564.17	ENST00000344749.9:ENST00000611869.5:ENST00000262965.12:ENST00000588136.7:ENST00000453954.6:ENST00000395423.7:ENST00000587235.6:ENST00000586318.1	protein_coding	protein_coding	protein_coding	protein_coding	3	62	2	1.93002	3.79026	5.6505	0.022095	2.70553e-4	0.123903	0.0150813
chr14	76152177	76152263	5795966	0	+	0.674419	(0.57,1]	chr14	549127	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GPATCH2L	ENSG00000089916.18	ENST00000554375.5:ENST00000556109.1:ENST00000557542.5:ENST00000261530.12:ENST00000557263.5:ENST00000557207.1:ENST00000554125.5:ENST00000312858.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	27	2	3.2676	3.790185	4.31277	0.00346264	0.00176203	0.0539802	0.0376652
chr9	135938560	135938660	4372329	0	-	0.62	(0.57,1]	chr9	402507	2	SS3_PROX	SS3_PROX:INTRON	UBAC1	ENSG00000130560.9	ENST00000371756.4:ENST00000489050.5:ENST00000465873.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	27	2	3.2676	3.790185	4.31277	0.00346264	0.00176203	0.0539802	0.0376652
chr12	79928298	79928398	5376467	0	-	0.54	(0.515,0.57]	chr12	512797	145	INTRON	INTRON	PPP1R12A	ENSG00000058272.19	ENST00000261207.9:ENST00000450142.7:ENST00000437004.6:ENST00000550107.5:ENST00000547330.5:ENST00000550510.5	protein_coding	protein_coding	protein_coding	protein_coding	2	73	2	3.58064	3.79016	3.99968	6.54693e-4	5.71792e-5	0.0233335	0.00617842
chr2	187534757	187534856	1289328	0	-	0.40404	(0.378,0.408]	chr2	135621	49	INTRON	INTRON	TFPI	ENSG00000003436.16	ENST00000233156.9:ENST00000409676.5:ENST00000339091.8:ENST00000421427.5:ENST00000437725.5:ENST00000453013.5:ENST00000417013.5:ENST00000420747.1	protein_coding	protein_coding	protein_coding	protein_coding	3	63	2	1.94559	3.79011	5.63463	0.0211434	3.59226e-4	0.122929	0.0175484
chr9	128462061	128462159	4204965	0	+	0.285714	(0.28,0.32]	chr9	384457	6	INTRON	INTRON	ODF2	ENSG00000136811.17	ENST00000497812.6:ENST00000393533.6:ENST00000351030.8:ENST00000372814.7:ENST00000444119.7:ENST00000393527.8:ENST00000469582.6:ENST00000604420.5:ENST00000448249.8:ENST00000372807.10:ENST00000688016.1:ENST00000686232.1:ENST00000434106.7:ENST00000546203.5:ENST00000446274.5:ENST00000421776.6:ENST00000432065.6:ENST00000372791.7:ENST00000470061.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	48	2	2.32871	3.79006	5.25141	0.0581621	0.00125199	0.167723	0.0328543
chrX	53672969	53673069	7821772	0	-	0.3	(0.28,0.32]	chrX	798234	185	INTRON	INTRON	HUWE1	ENSG00000086758.16	ENST00000262854.11:ENST00000342160.7:ENST00000218328.12:ENST00000446750.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	48	2	2.32871	3.79006	5.25141	0.0581621	0.00125199	0.167723	0.0328543
chr20	62245059	62245159	7298248	0	+	0.48	(0.476,0.515]	chr20	742388	20	INTRON	INTRON	OSBPL2	ENSG00000130703.17	ENST00000618509.4:ENST00000622332.4:ENST00000439951.6:ENST00000644535.1:ENST00000358053.3:ENST00000313733.9:ENST00000642957.1:ENST00000645520.1:ENST00000642932.1:ENST00000642516.1:ENST00000643174.1:ENST00000644775.1:ENST00000645442.1:ENST00000646968.1:ENST00000646834.1:ENST00000643412.1:ENST00000645594.1:ENST00000645426.1:ENST00000644702.1:ENST00000644189.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	51	2	2.48551	3.7898699999999996	5.09423	0.00756632	0.00204588	0.0773151	0.04086
chr15	36996953	36997052	6143024	0	-	0.454545	(0.44,0.476]	chr15	584824	462	INTRON	INTRON	MEIS2	ENSG00000134138.20	ENST00000338564.9:ENST00000561208.6:ENST00000397624.7:ENST00000340545.9:ENST00000314177.12:ENST00000560570.5:ENST00000559085.5:ENST00000557796.6:ENST00000397620.6:ENST00000424352.6:ENST00000559561.5:ENST00000607277.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	38	2	2.81896	3.7898199999999997	4.76068	0.0120766	0.00653414	0.0962311	0.0699952
chr16	200334	200433	6425891	0	-	0.474747	(0.44,0.476]	chr16	617421	7	INTRON	INTRON	LUC7L	ENSG00000007392.17	ENST00000337351.8:ENST00000426094.5:ENST00000397783.5:ENST00000629543.2:ENST00000490762.5:ENST00000293872.13:ENST00000429378.5:ENST00000464711.5:ENST00000419516.5:ENST00000397780.5:ENST00000495349.5:ENST00000418978.5:ENST00000430864.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	38	2	2.81896	3.7898199999999997	4.76068	0.0120766	0.00653414	0.0962311	0.0699952
chr2	135113670	135113770	873289	0	+	0.35	(0.32,0.35]	chr2	97763	4	SS5_PROX	SS5_PROX:INTRON	RAB3GAP1	ENSG00000115839.19	ENST00000539493.3:ENST00000688088.1:ENST00000693554.1:ENST00000690785.1:ENST00000689880.1:ENST00000264158.13:ENST00000690208.1:ENST00000691478.1:ENST00000686114.1:ENST00000685967.1:ENST00000442034.5:ENST00000687199.1:ENST00000691339.1:ENST00000688182.1:ENST00000487003.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	75	2	1.60297	3.78973	5.97649	0.0647328	3.1737e-5	0.179192	0.00449886
chr19	43735377	43735472	7187997	0	-	0.494737	(0.476,0.515]	chr19	727545	5	INTRON	INTRON	SMG9	ENSG00000105771.14	ENST00000270066.11:ENST00000601170.5:ENST00000597598.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	84	2	3.74433	3.78972	3.83511	2.85053e-4	2.63754e-4	0.0150568	0.0149561
chr10	63225279	63225379	4632980	0	-	0.31	(0.28,0.32]	chr10	426215	49	INTRON	INTRON	JMJD1C	ENSG00000171988.20	ENST00000399262.7:ENST00000402544.5:ENST00000542921.5:ENST00000469152.5:ENST00000489372.4:ENST00000633035.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	48	2	2.67975	3.7896849999999995	4.89962	0.0252505	0.00425206	0.12011	0.0595557
chr11	70271672	70271745	4820418	0	+	0.452055	(0.44,0.476]	chr11	449374	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PPFIA1	ENSG00000131626.19	ENST00000253925.12:ENST00000389547.7:ENST00000532504.5:ENST00000530746.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	39	2	3.14559	3.7896799999999997	4.43377	0.0162803	0.00384923	0.101453	0.0562562
chr11	125670532	125670632	4883446	0	+	0.41	(0.408,0.44]	chr11	456613	135	INTRON	INTRON	CHEK1	ENSG00000149554.14	ENST00000428830.6:ENST00000524737.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	51	2	2.33431	3.7896599999999996	5.24501	0.0129219	0.00137378	0.0990564	0.0336718
chr9	105706153	105706253	4182658	0	+	0.44	(0.408,0.44]	chr9	381500	4	SS5_PROX	SS5_PROX:INTRON	TMEM38B	ENSG00000095209.12	ENST00000374692.8:ENST00000374688.5:ENST00000435034.5	protein_coding	protein_coding	protein_coding	protein_coding	2	51	2	2.33431	3.7896599999999996	5.24501	0.0129219	0.00137378	0.0990564	0.0336718
chr6	57153360	57153460	2878709	0	+	0.39	(0.378,0.408]	chr6	273313	1	SS3_PROX	SS3_PROX:INTRON	ZNF451	ENSG00000112200.17	ENST00000357489.7:ENST00000370706.9:ENST00000491832.6:ENST00000504603.1:ENST00000508548.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	117	2	3.7532	3.7894750000000004	3.82575	3.23711e-4	1.39544e-5	0.0165891	0.00278668
chr1	116386787	116386887	195711	0	+	0.38	(0.378,0.408]	chr1	21627	1	SS3_PROX	SS3_PROX:INTRON	ATP1A1	ENSG00000163399.16	ENST00000418797.5:ENST00000295598.10:ENST00000537345.5:ENST00000369494.5:ENST00000369496.8	protein_coding	protein_coding	protein_coding	protein_coding	2	52	2	2.51464	3.78938	5.06412	0.00684341	0.0030522	0.0748032	0.0493883
chr20	47253224	47253324	7348465	0	-	0.58	(0.57,1]	chr20	749282	34	INTRON	INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000467200.6:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000468376.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	27	2	2.52405	3.78927	5.05449	0.0263139	1.79828e-4	0.133676	0.0121697
chr7	6578073	6578146	3273332	0	+	0.589041	(0.57,1]	chr7	304350	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ZDHHC4	ENSG00000136247.15	ENST00000396707.6:ENST00000396713.6:ENST00000405731.7:ENST00000335965.11:ENST00000493944.5:ENST00000489138.5:ENST00000396709.5:ENST00000474097.5:ENST00000483589.5:ENST00000496017.1:ENST00000396706.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	27	2	2.52405	3.78927	5.05449	0.0263139	1.79828e-4	0.133676	0.0121697
chrX	71537516	71537610	7679990	0	+	0.585106	(0.57,1]	chrX	786391	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	OGT	ENSG00000147162.14	ENST00000373719.8:ENST00000488174.5:ENST00000373701.7:ENST00000498566.3:ENST00000444774.3:ENST00000455587.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	27	2	2.52405	3.78927	5.05449	0.0263139	1.79828e-4	0.133676	0.0121697
chr5	6737833	6737933	2316080	0	+	0.51	(0.476,0.515]	chr5	224273	2	SS5_PROX	SS5_PROX:INTRON	TENT4A	ENSG00000112941.14	ENST00000230859.8:ENST00000631941.2	protein_coding	protein_coding	protein_coding	protein_coding	5	84	2	2.372	3.789225	5.20645	0.00136049	0.00103712	0.0336321	0.0295413
chr1	20760920	20761019	389595	0	-	0.434343	(0.408,0.44]	chr1	46537	33	INTRON	INTRON	HP1BP3	ENSG00000127483.19	ENST00000438032.6:ENST00000312239.10:ENST00000375003.6:ENST00000419948.5:ENST00000424732.5	protein_coding	protein_coding	protein_coding	protein_coding	1	41	2	2.51492	3.789175	5.06343	0.0329839	0.00101725	0.133816	0.0293497
chr11	119011311	119011411	4874110	0	+	0.44	(0.408,0.44]	chr11	455393	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	CENATAC	ENSG00000186166.9	ENST00000334418.6:ENST00000524670.5:ENST00000526463.5:ENST00000532132.5:ENST00000580556.5:ENST00000528088.1:ENST00000583842.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	41	2	2.51492	3.789175	5.06343	0.0329839	0.00101725	0.133816	0.0293497
chr4	55434623	55434722	2148757	0	-	0.393939	(0.378,0.408]	chr4	211415	69	UTR3	UTR3:EXON_MRNA	CLOCK	ENSG00000134852.15	ENST00000513440.6:ENST00000309964.8:ENST00000511124.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	52	2	2.29798	3.789155	5.28033	0.0147606	0.00143651	0.106702	0.0340925
chr6	79201332	79201421	3142089	0	-	0.359551	(0.35,0.378]	chr6	292905	2	UTR3	UTR3:EXON_MRNA	HMGN3	ENSG00000118418.14	ENST00000344726.9:ENST00000275036.11:ENST00000620514.1	protein_coding	protein_coding	protein_coding	protein_coding	2	55	2	2.04358	3.7891449999999995	5.53471	0.0329533	6.96925e-4	0.145171	0.024224
chr6	116730041	116730141	2945486	0	+	0.26	[0,0.28]	chr6	277263	3	SS5_PROX	SS5_PROX:INTRON	KPNA5	ENSG00000196911.11	ENST00000368564.7:ENST00000356348.6	protein_coding	protein_coding	protein_coding	protein_coding	1	48	2	2.95729	3.789065	4.62084	0.0313633	0.0101824	0.13151	0.089002
chr11	105435046	105435146	5029571	0	-	0.23	[0,0.28]	chr11	474017	1664	INTRON	INTRON	CARD18	ENSG00000255501.3	ENST00000649856.1:ENST00000528811.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	47	2	2.69187	3.78906	4.88625	0.0221271	0.0173315	0.123903	0.104099
chr1	36240726	36240825	73094	0	+	0.262626	[0,0.28]	chr1	9371	149	INTRON	INTRON	THRAP3	ENSG00000054118.15	ENST00000469141.6:ENST00000648638.1:ENST00000354618.10	protein_coding	protein_coding	protein_coding	protein_coding	1	47	2	2.63238	3.788995	4.94561	0.0259691	0.0150263	0.133676	0.0994339
chr1	198709924	198710024	290059	0	+	0.27	[0,0.28]	chr1	33292	1	SS5_PROX	SS5_PROX:INTRON	PTPRC	ENSG00000081237.20	ENST00000348564.11:ENST00000530727.5:ENST00000442510.8:ENST00000367367.8:ENST00000529828.5	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay	1	47	2	2.63238	3.788995	4.94561	0.0259691	0.0150263	0.133676	0.0994339
chr21	10446736	10446835	7368462	0	+	0.252525	[0,0.28]	chr21	751975	315	INTRON	INTRON	BAGE2	ENSG00000187172.15	ENST00000474011.5:ENST00000470054.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	1	47	2	2.63238	3.788995	4.94561	0.0259691	0.0150263	0.133676	0.0994339
chr4	2548853	2548953	1912638	0	+	0.23	[0,0.28]	chr4	191976	113	INTRON	INTRON	RNF4:FAM193A	ENSG00000063978.16:ENSG00000125386.16	ENST00000508235.1:ENST00000637812.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	47	2	2.63238	3.788995	4.94561	0.0259691	0.0150263	0.133676	0.0994339
chr6	119213377	119213477	3204449	0	-	0.23	[0,0.28]	chr6	298302	81	INTRON	INTRON	MAN1A1	ENSG00000111885.7	ENST00000368468.4	protein_coding	protein_coding	protein_coding	protein_coding	1	47	2	2.63238	3.788995	4.94561	0.0259691	0.0150263	0.133676	0.0994339
chr8	81710326	81710425	3979457	0	-	0.232323	[0,0.28]	chr8	364623	11	INTRON	INTRON	ZFAND1	ENSG00000104231.11	ENST00000524305.5:ENST00000220669.10:ENST00000523096.5:ENST00000522520.5:ENST00000522032.1:ENST00000519464.5:ENST00000521895.5:ENST00000521287.5:ENST00000523431.5:ENST00000520635.5:ENST00000519523.5:ENST00000517588.5:ENST00000520604.5:ENST00000523361.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	47	2	2.63238	3.788995	4.94561	0.0259691	0.0150263	0.133676	0.0994339
chr1	6527620	6527717	367845	0	-	0.463918	(0.44,0.476]	chr1	43189	4	INTRON	INTRON	NOL9	ENSG00000162408.11	ENST00000377705.6	protein_coding	protein_coding	protein_coding	protein_coding	1	39	2	2.49112	3.788855	5.08659	0.0315968	0.00226401	0.144381	0.0425438
chrX	48527574	48527671	7658479	0	+	0.453608	(0.44,0.476]	chrX	783779	4	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	EBP	ENSG00000147155.11	ENST00000276096.10:ENST00000498425.1:ENST00000495186.6:ENST00000446158.5:ENST00000466461.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	39	2	2.49112	3.788855	5.08659	0.0315968	0.00226401	0.144381	0.0425438
chr17	32475324	32475420	6598662	0	+	0.427083	(0.408,0.44]	chr17	642012	1	INTRON	INTRON	PSMD11	ENSG00000108671.11	ENST00000649012.1:ENST00000457654.6:ENST00000578397.5:ENST00000261712.8:ENST00000584340.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	81	2	2.23161	3.788545	5.34548	0.00206564	9.40657e-4	0.04217	0.0280776
chr1	28737829	28737929	58351	0	+	0.47	(0.44,0.476]	chr1	7581	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	YTHDF2	ENSG00000198492.16	ENST00000542507.5:ENST00000474884.5:ENST00000373812.8:ENST00000541996.5:ENST00000478283.5:ENST00000496288.5:ENST00000476976.1:ENST00000475796.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	79	2	2.08604	3.788505	5.49097	0.00407817	4.8612e-4	0.0580928	0.0203841
chr8	89709329	89709429	3984794	0	-	0.4	(0.378,0.408]	chr8	364981	604	INTRON	INTRON	RIPK2-DT	ENSG00000251136.10	ENST00000688654.1:ENST00000690564.1:ENST00000661105.1:ENST00000685145.1:ENST00000519655.6:ENST00000656898.2:ENST00000685787.1:ENST00000693018.1:ENST00000691313.1:ENST00000691446.1:ENST00000524190.2:ENST00000691897.1:ENST00000685988.1:ENST00000691595.1:ENST00000688855.1	lncRNA	lncRNA	lncRNA	lncRNA	1	42	2	2.46373	3.78844	5.11315	0.0382831	9.26795e-4	0.141795	0.0278442
chr11	3011595	3011694	4892118	0	-	0.454545	(0.44,0.476]	chr11	458413	22	INTRON	INTRON	CARS1	ENSG00000110619.18	ENST00000397111.9:ENST00000531387.5:ENST00000380525.9:ENST00000278224.13:ENST00000529772.5:ENST00000526890.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	51	2	2.54944	3.7882350000000002	5.02703	0.00591346	0.00278015	0.0694038	0.0469265
chr7	157169622	157169712	3454249	0	+	0.455556	(0.44,0.476]	chr7	322912	1	INTRON	INTRON	UBE3C	ENSG00000009335.18	ENST00000611269.4:ENST00000348165.10:ENST00000389103.4:ENST00000430750.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	51	2	2.54944	3.7882350000000002	5.02703	0.00591346	0.00278015	0.0694038	0.0469265
chr6	28591997	28592092	3075114	0	-	0.263158	[0,0.28]	chr6	285896	11	INTRON	INTRON	ZBED9	ENSG00000232040.4	ENST00000646382.1:ENST00000530247.1:ENST00000524745.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	78	2	2.22743	3.7881650000000002	5.3489	0.0097118	0.00514751	0.0875962	0.062965
chr3	197053750	197053849	1901015	0	-	0.383838	(0.378,0.408]	chr3	190479	17	INTRON	INTRON	DLG1	ENSG00000075711.21	ENST00000667157.1:ENST00000346964.6:ENST00000656428.1:ENST00000663148.1:ENST00000655488.1:ENST00000357674.9:ENST00000671185.1:ENST00000658701.1:ENST00000667104.1:ENST00000661336.1:ENST00000669565.1:ENST00000670455.1:ENST00000656087.1:ENST00000670366.1:ENST00000653583.1:ENST00000653795.1:ENST00000671246.1:ENST00000661453.1:ENST00000665728.1:ENST00000664564.1:ENST00000653331.1:ENST00000660432.1:ENST00000660898.1:ENST00000657381.1:ENST00000659221.1:ENST00000654737.1:ENST00000469371.5:ENST00000669332.1:ENST00000659716.1:ENST00000660553.1:ENST00000664991.1:ENST00000419354.5:ENST00000661440.1:ENST00000667971.1:ENST00000670935.1:ENST00000668578.1:ENST00000666007.1:ENST00000661229.1:ENST00000660237.1:ENST00000657098.1:ENST00000661013.1:ENST00000436682.6:ENST00000452595.5:ENST00000662727.1:ENST00000422288.6:ENST00000448528.6:ENST00000443183.5:ENST00000656944.1:ENST00000392382.6:ENST00000450955.5:ENST00000658155.1:ENST00000669714.1:ENST00000654733.1:ENST00000475394.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	42	2	2.72993	3.7881	4.84627	0.0188736	0.00254319	0.108861	0.0465056
chr12	133084997	133085096	5252891	0	+	0.464646	(0.44,0.476]	chr12	499719	9	INTRON	INTRON	ZNF140	ENSG00000196387.10	ENST00000356456.9:ENST00000412146.6:ENST00000544426.5:ENST00000355557.7:ENST00000440550.6:ENST00000319849.7:ENST00000392041.8:ENST00000536790.5:ENST00000429434.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	38	2	2.89047	3.788055	4.68564	0.00955699	0.00816201	0.0863913	0.0766625
chr3	32752312	32752411	1393800	0	+	0.454545	(0.44,0.476]	chr3	145926	145	INTRON	INTRON	CNOT10	ENSG00000182973.20	ENST00000331889.10:ENST00000328834.10:ENST00000435630.5:ENST00000454516.7:ENST00000416457.5:ENST00000430408.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	38	2	2.89047	3.788055	4.68564	0.00955699	0.00816201	0.0863913	0.0766625
chr4	67653097	67653196	2153972	0	-	0.464646	(0.44,0.476]	chr4	212133	35	INTRON	INTRON	UBA6	ENSG00000033178.13	ENST00000322244.10	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	2.89047	3.788055	4.68564	0.00955699	0.00816201	0.0863913	0.0766625
chr1	28739200	28739300	58367	0	+	0.38	(0.378,0.408]	chr1	7589	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	YTHDF2	ENSG00000198492.16	ENST00000542507.5:ENST00000474884.5:ENST00000373812.8:ENST00000541996.5:ENST00000478283.5:ENST00000496288.5:ENST00000476976.1:ENST00000475796.5:ENST00000468863.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	39	2	2.9917	3.787985	4.58427	0.0128325	0.0068789	0.0926667	0.0749442
chr1	186404196	186404295	277839	0	+	0.383838	(0.378,0.408]	chr1	32482	48	INTRON	INTRON	ODR4	ENSG00000157181.16	ENST00000367470.8:ENST00000287859.11:ENST00000419367.8:ENST00000478571.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	39	2	2.9917	3.787985	4.58427	0.0128325	0.0068789	0.0926667	0.0749442
chr19	23795644	23795744	7042762	0	+	0.38	(0.378,0.408]	chr19	702227	83	INTRON	INTRON	RPSAP58	ENSG00000288920.1	ENST00000471224.5:ENST00000692590.1:ENST00000475499.2:ENST00000686829.1:ENST00000689525.1:ENST00000691397.1:ENST00000688405.1:ENST00000687994.1:ENST00000484897.4:ENST00000685490.1:ENST00000462186.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	39	2	2.9917	3.787985	4.58427	0.0128325	0.0068789	0.0926667	0.0749442
chr4	67534385	67534484	2153403	0	-	0.383838	(0.378,0.408]	chr4	211997	31	INTRON	INTRON	CENPC	ENSG00000145241.11	ENST00000273853.11:ENST00000506882.5:ENST00000510189.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	44	2	2.13703	3.7879750000000003	5.43892	0.0797592	2.28412e-4	0.19979	0.0133228
chr2	55387377	55387477	1124066	0	-	0.31	(0.28,0.32]	chr2	120560	121	INTRON	INTRON	CCDC88A	ENSG00000115355.18	ENST00000263630.13:ENST00000436346.7:ENST00000336838.10:ENST00000642200.1:ENST00000413716.7:ENST00000643413.1:ENST00000647401.1:ENST00000645311.1:ENST00000646796.1:ENST00000645571.1:ENST00000645477.1:ENST00000645072.1:ENST00000644890.1:ENST00000644630.1:ENST00000647098.1:ENST00000646324.1:ENST00000642890.1:ENST00000647517.1:ENST00000645031.1:ENST00000645484.1:ENST00000645529.1:ENST00000644033.1:ENST00000644193.1:ENST00000645168.1:ENST00000647341.1:ENST00000430086.1:ENST00000644127.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	61	2	2.70831	3.78781	4.86731	0.0116253	0.00378444	0.0889104	0.0562562
chr8	53993305	53993375	3953008	0	-	0.314286	(0.28,0.32]	chr8	362540	3	SS5_PROX	SS5_PROX:INTRON	TCEA1	ENSG00000187735.15	ENST00000396401.7:ENST00000521604.7:ENST00000521086.6:ENST00000522635.5:ENST00000522397.5:ENST00000640382.1:ENST00000640041.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	61	2	2.70831	3.78781	4.86731	0.0116253	0.00378444	0.0889104	0.0562562
chr15	64091397	64091494	6202782	0	-	0.484536	(0.476,0.515]	chr15	591596	7	INTRON	INTRON	CIAO2A	ENSG00000166797.11	ENST00000300030.8:ENST00000380290.7:ENST00000559705.1:ENST00000557835.5:ENST00000559950.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	38	2	2.80729	3.78778	4.76827	0.0126008	0.00600704	0.0980703	0.0674604
chr15	68103077	68103177	6056444	0	+	0.5	(0.476,0.515]	chr15	576567	148	INTRON	INTRON	PIAS1	ENSG00000033800.14	ENST00000564915.5:ENST00000249636.11:ENST00000562190.1:ENST00000545237.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	38	2	2.80729	3.78778	4.76827	0.0126008	0.00600704	0.0980703	0.0674604
chr17	29100555	29100653	6746570	0	-	0.5	(0.476,0.515]	chr17	663057	4	INTRON	INTRON	MYO18A	ENSG00000196535.19	ENST00000527372.7:ENST00000531253.5:ENST00000533112.5:ENST00000530254.6:ENST00000532143.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	38	2	2.80729	3.78778	4.76827	0.0126008	0.00600704	0.0980703	0.0674604
chr2	9468375	9468475	689014	0	+	0.5	(0.476,0.515]	chr2	80794	4	SS5_PROX	SS5_PROX:INTRON	CPSF3	ENSG00000119203.14	ENST00000238112.8:ENST00000460593.1:ENST00000489403.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	38	2	2.80729	3.78778	4.76827	0.0126008	0.00600704	0.0980703	0.0674604
chr20	41359247	41359342	7275357	0	+	0.505263	(0.476,0.515]	chr20	739585	5	UTR3	UTR3:EXON_MRNA	LPIN3	ENSG00000132793.12	ENST00000373257.8:ENST00000632009.1	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	2.80729	3.78778	4.76827	0.0126008	0.00600704	0.0980703	0.0674604
chr3	47733553	47733652	1684589	0	-	0.50505	(0.476,0.515]	chr3	172094	41	INTRON	INTRON	SMARCC1	ENSG00000173473.11	ENST00000254480.10:ENST00000425518.5:ENST00000485833.1:ENST00000454240.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	38	2	2.80729	3.78778	4.76827	0.0126008	0.00600704	0.0980703	0.0674604
chr5	31506428	31506528	2596746	0	-	0.49	(0.476,0.515]	chr5	246668	14	INTRON	INTRON	DROSHA	ENSG00000113360.17	ENST00000344624.8:ENST00000511367.6:ENST00000513349.5:ENST00000512076.1	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	2.80729	3.78778	4.76827	0.0126008	0.00600704	0.0980703	0.0674604
chr3	195974096	195974196	1896804	0	-	0.49	(0.476,0.515]	chr3	189827	3	SS5_PROX	SS5_PROX:INTRON	SDHAP1	ENSG00000185485.14	ENST00000427841.5:ENST00000440850.5:ENST00000457601.1	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript:transcribed_unprocessed_pseudogene	1	39	2	3.13389	3.787585	4.44128	0.0151924	0.00405473	0.0994339	0.0578376
chr3	197707261	197707360	1904478	0	-	0.515152	(0.476,0.515]	chr3	190889	17	INTRON	INTRON	RUBCN	ENSG00000145016.16	ENST00000296343.10:ENST00000273582.9:ENST00000413360.5:ENST00000449205.1:ENST00000467303.5:ENST00000474214.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	39	2	3.13389	3.787585	4.44128	0.0151924	0.00405473	0.0994339	0.0578376
chr7	43714845	43714945	3526232	0	-	0.49	(0.476,0.515]	chr7	328785	30	INTRON	INTRON	COA1	ENSG00000106603.20	ENST00000415076.6:ENST00000446330.6:ENST00000446564.5:ENST00000438444.5:ENST00000223336.11:ENST00000310564.10:ENST00000415798.5:ENST00000431651.5:ENST00000451651.5:ENST00000418140.5:ENST00000448704.5:ENST00000470156.1:ENST00000457939.1:ENST00000420441.1:ENST00000478504.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	44	2	3.24596	3.7875550000000002	4.32915	0.0124637	0.00322919	0.0973643	0.0507087
chr1	37942664	37942764	426137	0	-	0.52	(0.515,0.57]	chr1	51639	4	SS3_PROX	SS3_PROX:INTRON	INPP5B	ENSG00000204084.13	ENST00000373023.6:ENST00000373024.8:ENST00000458109.6:ENST00000373026.5:ENST00000373021.1:ENST00000491406.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	37	2	3.37125	3.78753	4.20381	0.0189208	0.00136343	0.108861	0.0339121
chr19	58315076	58315174	7107401	0	+	0.418367	(0.408,0.44]	chr19	713417	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ZNF8-ERVK3-1:ERVK3-1	ENSG00000267216.1:ENSG00000142396.10	ENST00000591325.1:ENST00000413518.5:ENST00000427361.5:ENST00000590505.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	2	90	2	3.10641	3.787495	4.46858	0.00555646	4.5816e-6	0.0648867	0.00144313
chr16	75451168	75451257	6529389	0	-	0.382022	(0.378,0.408]	chr16	632370	1	SS5_PROX	SS5_PROX:INTRON	TMEM170A	ENSG00000166822.13	ENST00000357613.8:ENST00000561878.2:ENST00000568559.1:ENST00000569540.5:ENST00000567796.1:ENST00000566980.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	39	2	2.63247	3.787485	4.9425	0.0215745	0.00452675	0.123836	0.0595107
chr17	62490793	62490893	6652998	0	+	0.39	(0.378,0.408]	chr17	649307	43	INTRON	INTRON	TLK2	ENSG00000146872.19	ENST00000582809.5:ENST00000684213.1:ENST00000583843.5:ENST00000579450.5:ENST00000577616.1:ENST00000582195.6:ENST00000682085.1:ENST00000580705.5:ENST00000346027.10:ENST00000326270.13:ENST00000682203.1:ENST00000343388.11:ENST00000683536.1:ENST00000684440.1:ENST00000684772.1:ENST00000682274.1:ENST00000682827.1:ENST00000583690.6:ENST00000682075.1:ENST00000683104.1:ENST00000684012.1:ENST00000581041.5:ENST00000684553.1:ENST00000683737.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	39	2	2.63247	3.787485	4.9425	0.0215745	0.00452675	0.123836	0.0595107
chr4	912964	913035	2094100	0	-	0.422535	(0.408,0.44]	chr4	206980	2	SS3_PROX	SS3_PROX:INTRON	GAK	ENSG00000178950.18	ENST00000314167.9:ENST00000511163.5:ENST00000505819.5:ENST00000507580.5:ENST00000502656.5:ENST00000512325.3:ENST00000510022.5:ENST00000511229.5:ENST00000511983.5:ENST00000507124.1:ENST00000628912.1:ENST00000513935.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	42	2	2.27698	3.787385	5.29779	0.0583528	3.80479e-4	0.167723	0.0176313
chr6	136273550	136273618	3230952	0	-	0.279412	[0,0.28]	chr6	300369	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	BCLAF1	ENSG00000029363.17	ENST00000640069.1:ENST00000531224.6:ENST00000353331.8:ENST00000527536.5:ENST00000527613.5:ENST00000530767.5:ENST00000527759.5:ENST00000534269.5:ENST00000532384.5:ENST00000530429.5:ENST00000392348.6:ENST00000628517.2:ENST00000529826.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	88	2	1.74425	3.78737	5.83049	0.0287343	0.00112548	0.139835	0.0306963
chr19	16832147	16832246	7027394	0	+	0.434343	(0.408,0.44]	chr19	699470	1	INTRON	INTRON	SIN3B	ENSG00000127511.10	ENST00000248054.10:ENST00000379803.5:ENST00000596802.5	protein_coding	protein_coding	protein_coding	protein_coding	3	67	2	1.74108	3.78736	5.83364	0.0424099	2.74563e-5	0.148082	0.00414215
chr3	185928488	185928585	1886506	0	-	0.42268	(0.408,0.44]	chr3	188632	19	EXON_MRNA	EXON_MRNA:INTRON	TRA2B	ENSG00000136527.19	ENST00000453386.7:ENST00000492417.5:ENST00000487615.5:ENST00000456380.5:ENST00000382191.4:ENST00000465245.1:ENST00000485530.5:ENST00000477939.1:ENST00000471134.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	141	2	2.82697	3.78723	4.74749	4.95662e-4	2.00913e-6	0.0201536	9.69254e-4
chr14	73744042	73744141	5920445	0	-	0.434343	(0.408,0.44]	chr14	562351	34	INTRON	INTRON	MIDEAS	ENSG00000156030.14	ENST00000394071.6:ENST00000423556.7:ENST00000286523.9:ENST00000421708.1:ENST00000486739.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	38	2	2.82042	3.7872000000000003	4.75398	0.0120121	0.00703931	0.0962115	0.0718189
chr17	1782456	1782551	6701741	0	-	0.431579	(0.408,0.44]	chr17	656149	9	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	SMYD4	ENSG00000186532.12	ENST00000305513.12:ENST00000491788.1	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	2.82042	3.7872000000000003	4.75398	0.0120121	0.00703931	0.0962115	0.0718189
chr17	44037102	44037202	6778094	0	-	0.41	(0.408,0.44]	chr17	668110	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	LSM12	ENSG00000161654.10	ENST00000591247.6:ENST00000293406.8:ENST00000590563.1:ENST00000585388.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	38	2	2.82042	3.7872000000000003	4.75398	0.0120121	0.00703931	0.0962115	0.0718189
chr19	21756257	21756356	7159192	0	-	0.434343	(0.408,0.44]	chr19	723737	23	INTRON	INTRON	ZNF100	ENSG00000197020.12	ENST00000358296.11:ENST00000598026.1:ENST00000596452.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	38	2	2.82042	3.7872000000000003	4.75398	0.0120121	0.00703931	0.0962115	0.0718189
chr6	156990735	156990835	3009300	0	+	0.44	(0.408,0.44]	chr6	281130	52	INTRON	INTRON	ARID1B	ENSG00000049618.24	ENST00000346085.10:ENST00000636930.2:ENST00000647938.1:ENST00000350026.10:ENST00000674298.1:ENST00000674190.1:ENST00000414678.7:ENST00000319584.11:ENST00000452544.2:ENST00000637887.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	38	2	2.82042	3.7872000000000003	4.75398	0.0120121	0.00703931	0.0962115	0.0718189
chr7	73517436	73517535	3555052	0	-	0.414141	(0.408,0.44]	chr7	330813	62	INTRON	INTRON	BAZ1B	ENSG00000009954.11	ENST00000339594.9:ENST00000404251.1	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	2.82042	3.7872000000000003	4.75398	0.0120121	0.00703931	0.0962115	0.0718189
chr22	42855615	42855715	7596735	0	-	0.43	(0.408,0.44]	chr22	778093	76	INTRON	INTRON	ARFGAP3:PACSIN2	ENSG00000242247.11:ENSG00000100266.19	ENST00000263245.10:ENST00000437119.6:ENST00000454099.5:ENST00000507586.1:ENST00000435208.1:ENST00000493606.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	39	2	3.14706	3.787095	4.42713	0.0173083	0.00382411	0.104099	0.0562562
chr8	97683367	97683467	3809452	0	+	0.41	(0.408,0.44]	chr8	352842	218	INTRON	INTRON	MTDH	ENSG00000147649.10	ENST00000336273.8:ENST00000519934.5:ENST00000522313.1	protein_coding	protein_coding	protein_coding	protein_coding	1	39	2	3.14706	3.787095	4.42713	0.0173083	0.00382411	0.104099	0.0562562
chr10	125808477	125808575	4714619	0	-	0.367347	(0.35,0.378]	chr10	435023	6	INTRON	INTRON	UROS	ENSG00000188690.15	ENST00000368786.5:ENST00000368797.10:ENST00000649536.1:ENST00000648427.1:ENST00000650587.1:ENST00000650524.1:ENST00000650185.1:ENST00000648119.1:ENST00000420761.5:ENST00000649275.1:ENST00000649450.1:ENST00000368778.7:ENST00000368774.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	40	2	2.92952	3.787045	4.64457	0.012652	0.00881187	0.0926667	0.084878
chr2	97255791	97255890	832331	0	+	0.353535	(0.35,0.378]	chr2	93269	38	INTRON	INTRON	ANKRD36	ENSG00000135976.21	ENST00000420699.9	protein_coding	protein_coding	protein_coding	protein_coding	1	40	2	2.92952	3.787045	4.64457	0.012652	0.00881187	0.0926667	0.084878
chr4	127922082	127922182	2238116	0	-	0.36	(0.35,0.378]	chr4	219045	1	SS3_PROX	SS3_PROX:INTRON	MFSD8	ENSG00000164073.11	ENST00000296468.8:ENST00000641686.2:ENST00000641186.1:ENST00000641774.1:ENST00000641748.1:ENST00000641508.1:ENST00000641690.1:ENST00000641928.1:ENST00000641464.1:ENST00000641092.1:ENST00000641397.1:ENST00000641393.1:ENST00000641025.1:ENST00000641509.1:ENST00000642034.1:ENST00000641178.1:ENST00000641147.1:ENST00000641753.1:ENST00000641434.1:ENST00000641482.1:ENST00000641133.1:ENST00000641146.1:ENST00000641413.1:ENST00000641869.1:ENST00000515130.6:ENST00000641332.1:ENST00000641870.1:ENST00000641949.1:ENST00000641228.1:ENST00000641590.1:ENST00000641843.1:ENST00000642078.1:ENST00000641882.1:ENST00000641742.1:ENST00000641658.1:ENST00000513559.6:ENST00000642012.1:ENST00000509826.2:ENST00000642042.1:ENST00000641340.1:ENST00000641388.1:ENST00000641830.1:ENST00000641538.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	40	2	2.92952	3.787045	4.64457	0.012652	0.00881187	0.0926667	0.084878
chr7	102410883	102410982	3371555	0	+	0.373737	(0.35,0.378]	chr7	315478	30	INTRON	INTRON	PRKRIP1	ENSG00000128563.13	ENST00000469763.5:ENST00000482549.5:ENST00000496391.5:ENST00000482465.5:ENST00000462601.5:ENST00000397912.3:ENST00000468316.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	40	2	2.92952	3.787045	4.64457	0.012652	0.00881187	0.0926667	0.084878
chr13	19767766	19767866	5552793	0	-	0.3	(0.28,0.32]	chr13	530722	80	INTRON	INTRON	PSPC1	ENSG00000121390.19	ENST00000471658.5:ENST00000492741.5:ENST00000338910.9:ENST00000619300.4:ENST00000427943.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	49	2	3.43186	3.787	4.14214	0.0579756	0.00160646	0.167723	0.0367961
chr3	177165898	177165998	1872132	0	-	0.53	(0.515,0.57]	chr3	187434	15	INTRON	INTRON	TBL1XR1	ENSG00000177565.18	ENST00000457928.7:ENST00000430069.5:ENST00000673974.1:ENST00000352800.10:ENST00000422442.6:ENST00000428970.5:ENST00000424913.5:ENST00000437738.5:ENST00000431421.5:ENST00000635794.1:ENST00000630796.2:ENST00000450267.5:ENST00000630833.2:ENST00000431674.5:ENST00000422066.5:ENST00000443315.5:ENST00000627825.2:ENST00000427349.5:ENST00000413084.5:ENST00000637137.1:ENST00000491623.2:ENST00000637544.1:ENST00000636187.1:ENST00000636912.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	73	2	3.76294	3.78687	3.8108	2.17298e-4	2.08636e-4	0.0135077	0.0125926
chr1	149924214	149924314	549616	0	-	0.48	(0.476,0.515]	chr1	64544	2	SS3_PROX	SS3_PROX:INTRON	SF3B4	ENSG00000143368.10	ENST00000271628.9	protein_coding	protein_coding	protein_coding	protein_coding	1	39	2	2.47949	3.78686	5.09423	0.0326974	0.00204588	0.145164	0.04086
chr12	96352345	96352445	5394804	0	-	0.49	(0.476,0.515]	chr12	514463	171	INTRON	INTRON	CDK17	ENSG00000059758.8	ENST00000261211.8:ENST00000543119.6:ENST00000542666.5:ENST00000551816.5:ENST00000552496.5:ENST00000552262.1	protein_coding	protein_coding	protein_coding	protein_coding	1	39	2	2.47949	3.78686	5.09423	0.0326974	0.00204588	0.145164	0.04086
chr3	185936223	185936322	1886586	0	-	0.363636	(0.35,0.378]	chr3	188644	19	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	TRA2B	ENSG00000136527.19	ENST00000453386.7:ENST00000487615.5:ENST00000456380.5:ENST00000382191.4:ENST00000465245.1:ENST00000485530.5:ENST00000471134.1:ENST00000480461.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	92	2	1.85213	3.78682	5.72151	0.0137208	7.69755e-5	0.0949306	0.00735438
chr12	57347478	57347578	5338422	0	-	0.24	[0,0.28]	chr12	510710	61	INTRON	INTRON	R3HDM2	ENSG00000179912.21	ENST00000402412.6:ENST00000347140.7:ENST00000634871.1:ENST00000448732.1	protein_coding	protein_coding	protein_coding	protein_coding	1	47	2	2.74901	3.78667	4.82433	0.0200334	0.0188843	0.118148	0.109608
chr18	9150547	9150647	6869068	0	+	0.25	[0,0.28]	chr18	680561	123	INTRON	INTRON	ANKRD12	ENSG00000101745.17	ENST00000585234.5:ENST00000262126.9:ENST00000577992.1:ENST00000540578.6:ENST00000581635.5:ENST00000400020.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	47	2	2.74901	3.78667	4.82433	0.0200334	0.0188843	0.118148	0.109608
chr16	54919671	54919770	6488439	0	-	0.262626	[0,0.28]	chr16	627574	33	EXON_LNCRNA	EXON_LNCRNA:SS3_PROX:INTRON	CRNDE	ENSG00000245694.11	ENST00000613942.2:ENST00000661493.1:ENST00000668556.1:ENST00000660344.1:ENST00000502066.7:ENST00000559598.7:ENST00000688921.1:ENST00000501177.9:ENST00000560029.5:ENST00000661312.1:ENST00000689582.1:ENST00000558031.7:ENST00000689375.1:ENST00000691307.1:ENST00000657142.1:ENST00000557792.2:ENST00000559432.6:ENST00000655114.1:ENST00000560912.6:ENST00000558952.2	lncRNA	lncRNA	lncRNA	lncRNA	2	64	2	2.41169	3.786495	5.1613	0.0122872	0.00866441	0.0970106	0.0787025
chr1	174394345	174394445	259473	0	+	0.21	[0,0.28]	chr1	30817	2	SS5_PROX	SS5_PROX:INTRON	RABGAP1L	ENSG00000152061.24	ENST00000357444.10:ENST00000251507.8:ENST00000681986.1:ENST00000367690.5:ENST00000526253.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	47	2	2.57033	3.78648	5.00263	0.0305273	0.013055	0.143385	0.093385
chr16	18908480	18908580	6457930	0	-	0.28	[0,0.28]	chr16	622891	81	INTRON	INTRON	SMG1	ENSG00000157106.18	ENST00000446231.7:ENST00000532700.6:ENST00000569122.1:ENST00000563836.1	protein_coding	protein_coding	protein_coding	protein_coding	1	47	2	2.57033	3.78648	5.00263	0.0305273	0.013055	0.143385	0.093385
chr16	22457970	22458068	6322149	0	+	0.27551	[0,0.28]	chr16	605315	20	INTRON	INTRON	SMG1P1	ENSG00000237296.10	ENST00000446662.5:ENST00000381231.5:ENST00000309865.11:ENST00000691795.1:ENST00000308347.10:ENST00000687936.1:ENST00000691423.1:ENST00000337787.3	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	1	47	2	2.57033	3.78648	5.00263	0.0305273	0.013055	0.143385	0.093385
chr6	170637564	170637660	3037828	0	+	0.260417	[0,0.28]	chr6	283180	5	EXON_LNCRNA	EXON_LNCRNA:INTRON	ENSG00000287411:ENSG00000230423	ENSG00000287411.1:ENSG00000230423.3	ENST00000667394.1:ENST00000656791.1:ENST00000426839.2	lncRNA	lncRNA	lncRNA	lncRNA	1	47	2	2.57033	3.78648	5.00263	0.0305273	0.013055	0.143385	0.093385
chr12	110728353	110728452	5411385	0	-	0.424242	(0.408,0.44]	chr12	516726	18	INTRON	INTRON	PPP1CC	ENSG00000186298.12	ENST00000335007.10:ENST00000340766.9:ENST00000550261.5:ENST00000546933.5:ENST00000550991.5:ENST00000551676.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	57	2	1.81572	3.7863849999999997	5.75705	0.0626779	4.13252e-5	0.175915	0.00519938
chr3	138188151	138188245	1513959	0	+	0.521277	(0.515,0.57]	chr3	158291	5	UTR5	UTR5:EXON_MRNA:SS3_PROX:INTRON	ARMC8	ENSG00000114098.18	ENST00000538260.5:ENST00000481646.5:ENST00000469044.6:ENST00000491704.5:ENST00000461600.5:ENST00000466749.5:ENST00000358441.6:ENST00000489213.5:ENST00000461822.5:ENST00000485396.5:ENST00000471453.5:ENST00000470821.5:ENST00000471709.5:ENST00000463485.5:ENST00000468560.1	protein_coding	protein_coding	protein_coding	protein_coding	1	37	2	2.35125	3.7863299999999995	5.22141	0.0436431	6.44141e-4	0.162255	0.0231685
chr15	85004833	85004933	6089160	0	+	0.21	[0,0.28]	chr15	579504	221	INTRON	INTRON	PDE8A	ENSG00000073417.15	ENST00000310298.8:ENST00000557957.5:ENST00000394553.6:ENST00000339708.9:ENST00000478717.5:ENST00000485596.5:ENST00000559742.5:ENST00000559086.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	64	2	2.05756	3.78622	5.51488	0.0352544	0.00314116	0.150301	0.0500389
chr5	181194305	181194400	2783713	0	-	0.421053	(0.408,0.44]	chr5	262867	5	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TRIM7	ENSG00000146054.18	ENST00000274773.12:ENST00000393315.5:ENST00000504241.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	39	2	2.49258	3.786205	5.07983	0.0314608	0.00247652	0.144381	0.0446195
chr16	24190195	24190294	6327325	0	+	0.343434	(0.32,0.35]	chr16	605793	43	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000466124.1	protein_coding	protein_coding	protein_coding	protein_coding	1	45	2	2.51061	3.786	5.06139	0.0364463	0.00179023	0.138959	0.0392749
chr17	59098612	59098712	6801854	0	-	0.33	(0.32,0.35]	chr17	671820	69	INTRON	INTRON	TRIM37	ENSG00000108395.14	ENST00000393066.7:ENST00000577554.5:ENST00000262294.12:ENST00000393065.6:ENST00000580973.5:ENST00000580122.5:ENST00000580620.5:ENST00000583387.1:ENST00000584889.3:ENST00000625984.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	45	2	2.51061	3.786	5.06139	0.0364463	0.00179023	0.138959	0.0392749
chr1	37924737	37924837	425954	0	-	0.51	(0.476,0.515]	chr1	51620	329	INTRON	INTRON	INPP5B	ENSG00000204084.13	ENST00000373023.6:ENST00000373024.8:ENST00000458109.6:ENST00000373027.5:ENST00000373026.5	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	2.87879	3.7859949999999998	4.6932	0.00999149	0.00753088	0.0879541	0.074841
chr21	33267600	33267697	7395829	0	+	0.505155	(0.476,0.515]	chr21	753321	7	INTRON	INTRON	IL10RB	ENSG00000243646.11	ENST00000290200.7:ENST00000422891.5:ENST00000637650.2:ENST00000609556.3:ENST00000696764.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	38	2	2.87879	3.7859949999999998	4.6932	0.00999149	0.00753088	0.0879541	0.074841
chr5	159204641	159204739	2759140	0	-	0.5	(0.476,0.515]	chr5	260370	6	INTRON	INTRON	RNF145	ENSG00000145860.12	ENST00000424310.7:ENST00000519865.5:ENST00000274542.6:ENST00000611185.4:ENST00000521606.6:ENST00000518802.5:ENST00000520638.1:ENST00000520548.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	38	2	2.87879	3.7859949999999998	4.6932	0.00999149	0.00753088	0.0879541	0.074841
chr7	157169522	157169622	3454248	0	+	0.49	(0.476,0.515]	chr7	322911	4	SS5_PROX	SS5_PROX:INTRON	UBE3C	ENSG00000009335.18	ENST00000611269.4:ENST00000348165.10:ENST00000389103.4:ENST00000430750.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	38	2	2.87879	3.7859949999999998	4.6932	0.00999149	0.00753088	0.0879541	0.074841
chr13	19715482	19715581	5552265	0	-	0.373737	(0.35,0.378]	chr13	530696	55	INTRON	INTRON	PSPC1	ENSG00000121390.19	ENST00000471658.5:ENST00000492741.5:ENST00000635562.1:ENST00000338910.9:ENST00000619300.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	121	2	3.52777	3.7858849999999995	4.044	1.3063e-4	6.01383e-5	0.0103941	0.00639073
chr1	35918646	35918738	71015	0	+	0.5	(0.476,0.515]	chr1	9113	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	AGO1	ENSG00000092847.13	ENST00000373206.5:ENST00000373204.6:ENST00000674426.1:ENST00000674304.1:ENST00000635259.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	38	2	2.73205	3.785835	4.83962	0.0159328	0.00480934	0.109464	0.0602209
chr12	48156521	48156621	5318559	0	-	0.48	(0.476,0.515]	chr12	506252	26	INTRON	INTRON	ASB8	ENSG00000177981.11	ENST00000536549.5:ENST00000317697.8:ENST00000537754.1:ENST00000536953.5:ENST00000539528.5:ENST00000535055.5:ENST00000539865.5:ENST00000536071.5:ENST00000539503.5:ENST00000540143.5:ENST00000545791.5:ENST00000540212.5:ENST00000539464.5:ENST00000540782.1:ENST00000535988.3:ENST00000629941.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	38	2	2.73205	3.785835	4.83962	0.0159328	0.00480934	0.109464	0.0602209
chr16	69322686	69322786	6507703	0	-	0.51	(0.476,0.515]	chr16	630024	8	UTR3	UTR3:EXON_MRNA:INTRON	COG8	ENSG00000213380.16	ENST00000564419.1:ENST00000562595.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	38	2	2.73205	3.785835	4.83962	0.0159328	0.00480934	0.109464	0.0602209
chr11	47551793	47551892	4950390	0	-	0.50505	(0.476,0.515]	chr11	464246	272	INTRON	INTRON	CELF1	ENSG00000149187.19	ENST00000310513.10:ENST00000687097.1:ENST00000531165.5:ENST00000530151.5:ENST00000525841.5:ENST00000526419.1	protein_coding	protein_coding	protein_coding	protein_coding	2	86	2	3.53895	3.78576	4.03257	0.00075485700000000005	9.96835e-5	0.0251966	0.00903184
chr7	139082401	139082498	3656145	0	-	0.329897	(0.32,0.35]	chr7	339437	18	INTRON	INTRON	ZC3HAV1	ENSG00000105939.14	ENST00000242351.10:ENST00000464606.5:ENST00000680309.1:ENST00000471652.1	protein_coding	protein_coding	protein_coding	protein_coding	3	68	2	1.83315	3.7856899999999998	5.73823	0.0313348	4.5635e-4	0.144381	0.0196892
chr2	113935382	113935482	854706	0	+	0.42	(0.408,0.44]	chr2	95930	6	INTRON	INTRON	ACTR3	ENSG00000115091.12	ENST00000263238.7:ENST00000415792.5:ENST00000446821.5:ENST00000535589.3:ENST00000484165.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	51	2	2.55103	3.7856549999999998	5.02028	0.00587353	0.00303216	0.0690758	0.0493883
chr9	137664505	137664605	4223931	0	+	0.48	(0.476,0.515]	chr9	388170	131	INTRON	INTRON	EHMT1	ENSG00000181090.21	ENST00000462484.5:ENST00000371394.6:ENST00000630754.2:ENST00000460843.6:ENST00000626216.2:ENST00000629335.2:ENST00000637335.1:ENST00000636376.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	51	2	2.26034	3.7854599999999996	5.31058	0.0166235	9.15544e-4	0.110511	0.0278396
chr11	14323208	14323308	4917312	0	-	0.41	(0.408,0.44]	chr11	460800	145	INTRON	INTRON	RRAS2	ENSG00000133818.14	ENST00000256196.9:ENST00000537760.5:ENST00000529237.5:ENST00000534746.5:ENST00000526063.5:ENST00000532814.5:ENST00000531807.5:ENST00000532950.5:ENST00000531421.5:ENST00000526717.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	38	2	2.89193	3.7854349999999997	4.67894	0.00950364	0.0087648	0.0863579	0.0788605
chr5	62562155	62562255	2364535	0	+	0.43	(0.408,0.44]	chr5	228011	5	INTRON	INTRON	IPO11	ENSG00000086200.17	ENST00000424533.5:ENST00000325324.11:ENST00000409296.7:ENST00000511713.5:ENST00000511133.1:ENST00000413749.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	38	2	2.89193	3.7854349999999997	4.67894	0.00950364	0.0087648	0.0863579	0.0788605
chr12	119760538	119760638	5431079	0	-	0.5	(0.476,0.515]	chr12	518917	2	SS5_PROX	SS5_PROX:INTRON	CIT	ENSG00000122966.17	ENST00000392521.7:ENST00000261833.11:ENST00000677438.1:ENST00000677993.1:ENST00000678087.1:ENST00000678652.1:ENST00000676849.1:ENST00000678677.1:ENST00000545913.6:ENST00000679249.1:ENST00000679120.1:ENST00000677812.1:ENST00000677849.1:ENST00000678494.1:ENST00000612548.4:ENST00000392520.2:ENST00000537607.5:ENST00000676833.1:ENST00000536325.1:ENST00000677927.1:ENST00000676563.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	61	2	2.16306	3.785375	5.40769	0.00973468	6.23078e-4	0.0877284	0.0229151
chr17	59648695	59648763	6641855	0	+	0.5	(0.476,0.515]	chr17	648543	1	SS5_PROX	SS5_PROX:INTRON	CLTC	ENSG00000141367.12	ENST00000621829.4:ENST00000393043.5:ENST00000269122.8:ENST00000579456.5:ENST00000584313.5:ENST00000472129.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	61	2	2.11679	3.785345	5.4539	0.0115627	5.16081e-4	0.0962115	0.0208667
chr16	23998078	23998178	6325383	0	+	0.44	(0.408,0.44]	chr16	605711	91	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000498739.1:ENST00000647422.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	112	2	3.48204	3.7853000000000003	4.08856	8.21424e-5	6.71132e-5	0.00812487	0.00678102
chr11	3757495	3757595	4894762	0	-	0.5	(0.476,0.515]	chr11	458876	37	INTRON	INTRON	NUP98	ENSG00000110713.17	ENST00000359171.8:ENST00000324932.12:ENST00000650171.1:ENST00000355260.7:ENST00000397004.8:ENST00000397007.8:ENST00000527104.5:ENST00000529379.1:ENST00000397013.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	84	2	3.70553	3.785275	3.86502	3.44823e-4	2.2858e-4	0.0165103	0.0138641
chr20	47275413	47275513	7348688	0	-	0.49	(0.476,0.515]	chr20	749288	126	INTRON	INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000467200.6:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000468376.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	84	2	3.70553	3.785275	3.86502	3.44823e-4	2.2858e-4	0.0165103	0.0138641
chr19	314442	314542	7109300	0	-	0.43	(0.408,0.44]	chr19	713786	4	INTRON	INTRON	MIER2	ENSG00000105556.12	ENST00000264819.7	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	2.74518	3.78524	4.8253	0.0152229	0.0056738	0.108535	0.0653997
chr21	32367532	32367624	7438553	0	-	0.423913	(0.408,0.44]	chr21	758899	4	INTRON	INTRON	URB1	ENSG00000142207.7	ENST00000382751.4	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	2.74518	3.78524	4.8253	0.0152229	0.0056738	0.108535	0.0653997
chr4	77807278	77807378	2166915	0	-	0.42	(0.408,0.44]	chr4	213719	305	INTRON	INTRON	CNOT6L	ENSG00000138767.14	ENST00000504123.7:ENST00000649644.1:ENST00000515506.6:ENST00000512485.6:ENST00000504804.7:ENST00000506166.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	38	2	2.74518	3.78524	4.8253	0.0152229	0.0056738	0.108535	0.0653997
chr7	4685466	4685566	3269947	0	+	0.43	(0.408,0.44]	chr7	303884	22	INTRON	INTRON	FOXK1	ENSG00000164916.11	ENST00000328914.5	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	2.74518	3.78524	4.8253	0.0152229	0.0056738	0.108535	0.0653997
chr7	149026266	149026365	3671027	0	-	0.434343	(0.408,0.44]	chr7	340694	48	INTRON	INTRON	PDIA4	ENSG00000155660.11	ENST00000652332.1:ENST00000286091.9:ENST00000413966.1	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	2.74518	3.78524	4.8253	0.0152229	0.0056738	0.108535	0.0653997
chr12	112074174	112074274	5415070	0	-	0.53	(0.515,0.57]	chr12	517202	1	SS5_PROX	SS5_PROX:INTRON	NAA25	ENSG00000111300.10	ENST00000261745.9:ENST00000552527.5:ENST00000549711.5:ENST00000551858.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	47	2	2.73258	3.7851100000000004	4.83764	0.00279527	0.00260192	0.0470772	0.0469265
chr3	47730286	47730385	1684556	0	-	0.474747	(0.44,0.476]	chr3	172094	8	INTRON	INTRON	SMARCC1	ENSG00000173473.11	ENST00000254480.10:ENST00000425518.5:ENST00000485833.1:ENST00000454240.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	62	2	2.42643	3.7851049999999997	5.14378	0.0033369	0.00184943	0.0528877	0.0388609
chrX	48916685	48916784	7815677	0	-	0.555556	(0.515,0.57]	chrX	796810	9	INTRON	INTRON	PIM2	ENSG00000102096.9	ENST00000376509.4	protein_coding	protein_coding	protein_coding	protein_coding	3	97	2	3.30664	3.7851	4.26356	1.4883e-4	1.84244e-5	0.0105921	0.00349761
chr21	46316235	46316329	7471609	0	-	0.521277	(0.515,0.57]	chr21	761745	3	INTRON	INTRON	C21orf58	ENSG00000160298.18	ENST00000491666.5:ENST00000397683.5:ENST00000417060.5:ENST00000397682.7:ENST00000291691.12:ENST00000397680.5:ENST00000397679.5:ENST00000445935.5:ENST00000475776.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	51	2	2.7208	3.7850799999999998	4.84936	0.00306828	0.00146032	0.0494933	0.0349875
chr10	96849808	96849907	4503140	0	+	0.414141	(0.408,0.44]	chr10	414529	156	INTRON	INTRON	LCOR	ENSG00000196233.14	ENST00000676067.1:ENST00000676257.1:ENST00000676187.1:ENST00000675151.1:ENST00000675687.1:ENST00000675251.1:ENST00000676123.1:ENST00000371103.8:ENST00000675471.1:ENST00000421806.4:ENST00000675902.1:ENST00000540664.6:ENST00000676414.1:ENST00000675537.1:ENST00000675117.1:ENST00000675125.1:ENST00000356016.7:ENST00000371097.8:ENST00000676381.1:ENST00000674796.1:ENST00000674725.1:ENST00000675971.1:ENST00000676373.1:ENST00000676314.1:ENST00000675915.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	76	2	1.7743	3.785075	5.79585	0.0244755	3.36399e-5	0.12011	0.00463632
chr1	42949216	42949316	433047	0	-	0.41	(0.408,0.44]	chr1	52495	55	INTRON	INTRON	SLC2A1	ENSG00000117394.24	ENST00000426263.10:ENST00000630287.2:ENST00000675112.1:ENST00000674765.1:ENST00000625233.2:ENST00000372500.4:ENST00000415851.6:ENST00000630821.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	342	2	3.76133	3.78489	3.80845	7.69564e-7	4.05131e-8	5.3953e-4	8.15344e-5
chr7	74660567	74660667	3335275	0	+	0.37	(0.35,0.378]	chr7	310340	21	INTRON	INTRON	GTF2I	ENSG00000263001.8	ENST00000650807.1:ENST00000690345.1:ENST00000613513.1:ENST00000573035.6:ENST00000614986.4:ENST00000620879.4:ENST00000621734.4:ENST00000443166.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	92	2	3.69928	3.78485	3.87042	3.94786e-4	2.9524e-4	0.0178567	0.0159581
chr4	73205895	73205995	2160297	0	-	0.36	(0.35,0.378]	chr4	212794	280	INTRON	INTRON	ANKRD17	ENSG00000132466.20	ENST00000358602.9:ENST00000558247.5:ENST00000330838.10:ENST00000509867.6:ENST00000561029.1:ENST00000559367.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	82	2	1.91549	3.78483	5.65417	0.00887698	4.33402e-4	0.0849778	0.0190829
chr7	66584291	66584378	3540036	0	-	0.54023	(0.515,0.57]	chr7	330271	4	EXON_LNCRNA	EXON_LNCRNA:INTRON	RABGEF1P1	ENSG00000229180.8	ENST00000639011.1:ENST00000692299.1:ENST00000686269.1:ENST00000649635.1:ENST00000686397.1:ENST00000690339.1:ENST00000638711.1:ENST00000692179.1:ENST00000639153.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	3	61	2	1.63184	3.78474	5.93764	0.0545832	6.58036e-6	0.165292	0.00181159
chr6	20447471	20447571	2827905	0	+	0.44	(0.408,0.44]	chr6	265583	74	INTRON	INTRON	E2F3	ENSG00000112242.16	ENST00000346618.8:ENST00000535432.2	protein_coding	protein_coding	protein_coding	protein_coding	2	55	2	2.21857	3.78472	5.35087	0.0209591	3.00323e-4	0.112046	0.0155054
chr12	122049926	122050025	5239679	0	+	0.545455	(0.515,0.57]	chr12	497461	55	INTRON	INTRON	BCL7A	ENSG00000110987.9	ENST00000538010.5:ENST00000261822.5	protein_coding	protein_coding	protein_coding	protein_coding	2	47	2	2.1885	3.78463	5.38076	0.0202537	3.24968e-4	0.121364	0.0165891
chr5	98907292	98907392	2683857	0	-	0.58	(0.57,1]	chr5	253957	18	INTRON	INTRON	CHD1	ENSG00000153922.11	ENST00000614616.5:ENST00000284049.7	protein_coding	protein_coding	protein_coding	protein_coding	1	26	2	2.89463	3.78453	4.67443	0.00788262	8.07515e-4	0.076155	0.0258804
chr6	4835697	4835797	2791455	0	+	0.61	(0.57,1]	chr6	263598	585	INTRON	INTRON	CDYL	ENSG00000153046.18	ENST00000328908.9:ENST00000491864.1:ENST00000440139.5:ENST00000483019.1:ENST00000397588.8:ENST00000472453.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	26	2	2.89463	3.78453	4.67443	0.00788262	8.07515e-4	0.076155	0.0258804
chr22	40080771	40080871	7517207	0	+	0.31	(0.28,0.32]	chr22	768084	348	INTRON	INTRON	TNRC6B	ENSG00000100354.21	ENST00000301923.13:ENST00000441751.5:ENST00000402203.5	protein_coding	protein_coding	protein_coding	protein_coding	2	66	2	1.76293	3.78451	5.80609	0.0766478	1.23223e-4	0.196164	0.00949625
chr4	78849538	78849636	1982123	0	+	0.316327	(0.28,0.32]	chr4	198497	19	INTRON	INTRON	BMP2K	ENSG00000138756.19	ENST00000389010.7:ENST00000502613.3:ENST00000502871.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	66	2	1.76293	3.78451	5.80609	0.0766478	1.23223e-4	0.196164	0.00949625
chr16	23417457	23417539	6463723	0	-	0.548781	(0.515,0.57]	chr16	623758	3	SS3_PROX	SS3_PROX:INTRON	COG7	ENSG00000168434.13	ENST00000307149.10	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	3.05839	3.784195	4.51	0.00809449	0.00485936	0.0766625	0.0640618
chr22	50404395	50404494	7544805	0	+	0.535354	(0.515,0.57]	chr22	771041	99	INTRON	INTRON	PPP6R2	ENSG00000100239.16	ENST00000359139.7:ENST00000395741.7:ENST00000612753.5:ENST00000395744.7:ENST00000216061.9	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	3.05839	3.784195	4.51	0.00809449	0.00485936	0.0766625	0.0640618
chr5	78279989	78280089	2651000	0	-	0.52	(0.515,0.57]	chr5	251795	71	INTRON	INTRON	AP3B1	ENSG00000132842.15	ENST00000519295.6:ENST00000255194.11:ENST00000695515.1:ENST00000695454.1:ENST00000695511.1:ENST00000695453.1:ENST00000695455.1:ENST00000695513.1:ENST00000695488.1:ENST00000695450.1:ENST00000695507.1:ENST00000695512.1:ENST00000695510.1:ENST00000695451.1:ENST00000695447.1:ENST00000695505.1:ENST00000519888.6:ENST00000695514.1:ENST00000517940.2:ENST00000517561.2:ENST00000695452.1:ENST00000695449.1:ENST00000695540.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	35	2	3.05839	3.784195	4.51	0.00809449	0.00485936	0.0766625	0.0640618
chr1	155852675	155852775	564405	0	-	0.56	(0.515,0.57]	chr1	67384	194	INTRON	INTRON	GON4L	ENSG00000116580.20	ENST00000368331.6:ENST00000615926.4:ENST00000437809.5:ENST00000271883.9:ENST00000361040.9:ENST00000622608.2:ENST00000471341.5:ENST00000468867.1:ENST00000488251.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	49	2	2.15051	3.7840300000000004	5.41755	0.0238113	1.1703e-4	0.118889	0.00929802
chr9	33998494	33998591	4245339	0	-	0.381443	(0.378,0.408]	chr9	390468	16	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	UBAP2	ENSG00000137073.24	ENST00000379238.7:ENST00000683659.1:ENST00000682239.1:ENST00000683140.1:ENST00000682209.1:ENST00000681980.1:ENST00000360802.6:ENST00000683252.1:ENST00000684158.1:ENST00000682914.1:ENST00000683717.1:ENST00000379239.9:ENST00000683084.1:ENST00000684754.1:ENST00000629575.2:ENST00000684298.1:ENST00000412543.6:ENST00000480885.5:ENST00000459988.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	54	2	2.82967	3.78403	4.73839	0.00837252	0.00189968	0.0774402	0.0402736
chr2	127742350	127742450	1225186	0	-	0.4	(0.378,0.408]	chr2	130486	39	INTRON	INTRON	WDR33	ENSG00000136709.12	ENST00000322313.9:ENST00000436787.5:ENST00000393006.5	protein_coding	protein_coding	protein_coding	protein_coding	2	52	2	2.23831	3.783995	5.32968	0.0179575	0.00119786	0.114265	0.0315806
chr12	56674458	56674557	5335942	0	-	0.50505	(0.476,0.515]	chr12	510192	10	INTRON	INTRON	PTGES3	ENSG00000110958.16	ENST00000537473.2:ENST00000614328.4:ENST00000262033.11:ENST00000414274.7:ENST00000436399.6:ENST00000448157.6:ENST00000456859.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	61	2	2.20789	3.78392	5.35995	0.00820497	7.54256e-4	0.081115	0.0251179
chr14	60092919	60093018	5735384	0	+	0.333333	(0.32,0.35]	chr14	544735	1	INTRON	INTRON	PCNX4	ENSG00000126773.13	ENST00000317623.8:ENST00000391611.6:ENST00000406854.6:ENST00000406949.5:ENST00000556907.1:ENST00000555569.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	46	2	2.84812	3.7839099999999997	4.7197	0.0147575	0.00568521	0.0983813	0.0678837
chr15	41292013	41292113	6004468	0	+	0.46	(0.44,0.476]	chr15	571266	12	INTRON	INTRON	OIP5-AS1	ENSG00000247556.6	ENST00000558945.5:ENST00000500949.6:ENST00000561275.5:ENST00000560706.5:ENST00000501665.2	lncRNA	lncRNA	lncRNA	lncRNA	4	70	2	2.12136	3.78378	5.4462	0.00591413	5.83686e-4	0.0694038	0.0223753
chr12	128812690	128812789	5447631	0	-	0.565657	(0.515,0.57]	chr12	521500	22	INTRON	INTRON	SLC15A4	ENSG00000139370.12	ENST00000266771.10:ENST00000376744.8:ENST00000366292.6:ENST00000376740.8:ENST00000539703.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	35	2	2.65834	3.78373	4.90912	0.0187418	0.0021669	0.117523	0.0417866
chr7	74712688	74712786	3335806	0	+	0.561224	(0.515,0.57]	chr7	310391	12	INTRON	INTRON	GTF2I	ENSG00000263001.8	ENST00000650807.1:ENST00000690345.1:ENST00000573035.6:ENST00000614986.4:ENST00000620879.4:ENST00000621734.4:ENST00000443166.5:ENST00000490431.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	35	2	2.65834	3.78373	4.90912	0.0187418	0.0021669	0.117523	0.0417866
chr7	132974868	132974968	3644813	0	-	0.34	(0.32,0.35]	chr7	338854	3	SS5_PROX	SS5_PROX:INTRON	CHCHD3	ENSG00000106554.13	ENST00000262570.10:ENST00000448878.6:ENST00000496427.5:ENST00000423635.5:ENST00000481152.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	157	2	2.9846	3.7837249999999996	4.58285	4.60773e-4	3.66628e-6	0.0198052	0.00125025
chr9	37764265	37764365	4121515	0	+	0.45	(0.44,0.476]	chr9	375706	4	SS5_PROX	SS5_PROX:INTRON	TRMT10B	ENSG00000165275.10	ENST00000377753.6:ENST00000537911.5:ENST00000297994.4:ENST00000377754.6:ENST00000488673.6:ENST00000537016.5:ENST00000538370.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	84	2	3.75608	3.783545	3.81101	3.0729e-4	2.6487e-4	0.0161362	0.0144071
chrX	154777049	154777141	7739447	0	+	0.445652	(0.44,0.476]	chrX	792444	3	UTR3	UTR3:EXON_MRNA	DKC1	ENSG00000130826.19	ENST00000620277.4:ENST00000413910.6:ENST00000426673.6:ENST00000696575.1:ENST00000369550.10:ENST00000696579.1:ENST00000696578.1:ENST00000696577.1:ENST00000696580.1:ENST00000696581.1:ENST00000696582.1:ENST00000696583.1:ENST00000696627.1:ENST00000696628.1:ENST00000696584.1:ENST00000696585.1:ENST00000696586.1:ENST00000696587.1:ENST00000696588.1:ENST00000484317.6:ENST00000696589.1:ENST00000696590.1:ENST00000696591.1:ENST00000696592.1:ENST00000492372.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	61	2	2.03266	3.783525	5.53439	0.0155853	4.05863e-4	0.109411	0.0185763
chr22	42647836	42647932	7595379	0	-	0.447917	(0.44,0.476]	chr22	777961	9	INTRON	INTRON	CYB5R3	ENSG00000100243.22	ENST00000693367.1:ENST00000352397.10:ENST00000361740.9:ENST00000692152.1:ENST00000693363.1:ENST00000689795.1:ENST00000686523.1:ENST00000407332.6:ENST00000687183.1:ENST00000691295.1:ENST00000690835.1:ENST00000689195.1:ENST00000688244.1:ENST00000690993.1:ENST00000689239.1:ENST00000692344.1:ENST00000686129.1:ENST00000466276.2:ENST00000693716.1:ENST00000688004.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	41	2	2.38219	3.7835	5.18481	0.045456	6.21872e-4	0.149888	0.0223951
chr15	57025070	57025170	6033177	0	+	0.58	(0.57,1]	chr15	574669	233	INTRON	INTRON	TCF12	ENSG00000140262.18	ENST00000438423.6:ENST00000267811.9:ENST00000333725.10:ENST00000560190.5:ENST00000559609.5:ENST00000558908.5:ENST00000557843.5:ENST00000557947.5:ENST00000561152.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	73	2	3.05625	3.7834149999999998	4.51058	8.84921e-5	1.01028e-6	0.00791674	6.234e-4
chr1	246304518	246304618	678680	0	-	0.35	(0.32,0.35]	chr1	79733	1109	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000453676.5:ENST00000462422.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	45	2	2.6321	3.783175	4.93425	0.0268	0.00281048	0.123349	0.0488779
chr11	31653955	31654055	4762264	0	+	0.35	(0.32,0.35]	chr11	440400	38	UTR3	UTR3:EXON_MRNA:INTRON	ELP4	ENSG00000109911.19	ENST00000639878.1:ENST00000379163.10:ENST00000350638.10:ENST00000638347.1:ENST00000640961.2:ENST00000638482.1:ENST00000640533.1:ENST00000639570.1:ENST00000640081.1:ENST00000640342.1:ENST00000640231.1:ENST00000638917.1:ENST00000395934.2:ENST00000640954.1:ENST00000638184.1:ENST00000638984.1:ENST00000640790.1:ENST00000639097.1:ENST00000638828.1:ENST00000639182.1:ENST00000638317.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	45	2	2.6321	3.783175	4.93425	0.0268	0.00281048	0.123349	0.0488779
chr14	68004810	68004910	5767225	0	+	0.34	(0.32,0.35]	chr14	547066	41	INTRON	INTRON	RAD51B	ENSG00000182185.19	ENST00000487861.5:ENST00000471583.6:ENST00000479335.5:ENST00000487270.5:ENST00000488612.5:ENST00000553595.5:ENST00000497460.5:ENST00000492236.5:ENST00000554244.5:ENST00000478014.5:ENST00000469165.6:ENST00000460526.5:ENST00000468382.5:ENST00000557045.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	45	2	2.6321	3.783175	4.93425	0.0268	0.00281048	0.123349	0.0488779
chr1	175001585	175001682	265554	0	+	0.371134	(0.35,0.378]	chr1	30984	6	INTRON	INTRON	CACYBP	ENSG00000116161.18	ENST00000613570.4:ENST00000426793.1:ENST00000461977.1:ENST00000483307.1:ENST00000367679.7:ENST00000473925.1:ENST00000406752.1:ENST00000405362.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	42	2	3.26794	3.7831650000000003	4.29839	0.0294717	0.00257067	0.128055	0.0466761
chr1	245816814	245816914	673790	0	-	0.58	(0.57,1]	chr1	79669	20	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000366517.5:ENST00000366516.5:ENST00000490107.6:ENST00000470510.5:ENST00000483072.5:ENST00000493441.5:ENST00000488153.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	28	2	2.36411	3.78313	5.20215	0.0408868	8.28896e-5	0.161534	0.00812487
chr1	11013522	11013615	24562	0	+	0.397849	(0.378,0.408]	chr1	2561	4	SS3_PROX	SS3_PROX:INTRON	TARDBP	ENSG00000120948.19	ENST00000473118.5:ENST00000639083.1:ENST00000639599.1:ENST00000629725.2:ENST00000439080.6:ENST00000240185.8:ENST00000472476.5:ENST00000476201.5:ENST00000613864.4:ENST00000614757.4:ENST00000621715.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	54	2	1.97143	3.783125	5.59482	0.0398704	4.23783e-4	0.161534	0.0189958
chr7	152373065	152373165	3680664	0	-	0.26	[0,0.28]	chr7	341660	140	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000682301.1:ENST00000452749.2:ENST00000680867.1:ENST00000683800.1:ENST00000684278.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	77	2	2.13176	3.78302	5.43428	0.0135097	0.00400834	0.101363	0.0551303
chr1	229340200	229340300	652586	0	-	0.44	(0.408,0.44]	chr1	77249	4	SS5_PROX	SS5_PROX:INTRON	CCSAP	ENSG00000154429.11	ENST00000366687.5:ENST00000284617.7:ENST00000366686.1:ENST00000483092.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	55	2	2.11447	3.783	5.45153	0.0285207	1.89064e-4	0.12666	0.0119565
chr1	68479720	68479820	479085	0	-	0.46	(0.44,0.476]	chr1	57556	4	SS3_PROX	SS3_PROX:INTRON	DEPDC1	ENSG00000024526.17	ENST00000370966.9:ENST00000456315.7:ENST00000488146.5:ENST00000489862.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	41	2	2.86231	3.78293	4.70355	0.012214	0.00383786	0.0910127	0.0562562
chr17	66395715	66395815	6663229	0	+	0.45	(0.44,0.476]	chr17	650326	315	INTRON	INTRON	PRKCA	ENSG00000154229.12	ENST00000413366.8:ENST00000578063.5:ENST00000284384.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	41	2	2.86231	3.78293	4.70355	0.012214	0.00383786	0.0910127	0.0562562
chr17	73223084	73223183	6835124	0	-	0.454545	(0.44,0.476]	chr17	675246	100	INTRON	INTRON	FAM104A	ENSG00000133193.13	ENST00000403627.7:ENST00000405159.8:ENST00000583178.5:ENST00000580032.1:ENST00000581110.1:ENST00000579872.1:ENST00000583024.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	41	2	2.86231	3.78293	4.70355	0.012214	0.00383786	0.0910127	0.0562562
chrX	153917343	153917441	7911599	0	-	0.469388	(0.44,0.476]	chrX	805259	31	INTRON	INTRON	ARHGAP4	ENSG00000089820.16	ENST00000393721.5:ENST00000370028.7:ENST00000420383.5:ENST00000350060.10:ENST00000370016.5:ENST00000470209.5:ENST00000494302.5:ENST00000404127.6:ENST00000494813.5:ENST00000422918.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	41	2	2.86231	3.78293	4.70355	0.012214	0.00383786	0.0910127	0.0562562
chr1	37550175	37550274	424227	0	-	0.333333	(0.32,0.35]	chr1	51285	8	INTRON	INTRON	SNIP1	ENSG00000163877.11	ENST00000296215.8:ENST00000468040.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	67	2	1.97654	3.782885	5.58923	0.0199113	8.12357e-4	0.120668	0.0263656
chr5	109693548	109693648	2449047	0	+	0.41	(0.408,0.44]	chr5	234584	26	INTRON	INTRON	MAN2A1	ENSG00000112893.10	ENST00000261483.5	protein_coding	protein_coding	protein_coding	protein_coding	2	55	2	2.26792	3.782855	5.29779	0.0179973	3.80479e-4	0.106756	0.0176313
chr5	149550382	149550466	2751076	0	-	0.416667	(0.408,0.44]	chr5	259092	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CSNK1A1	ENSG00000113712.19	ENST00000261798.10:ENST00000377843.8:ENST00000657001.1:ENST00000515768.6:ENST00000606719.6:ENST00000657462.1:ENST00000661952.1:ENST00000662268.1:ENST00000657706.1:ENST00000670598.1:ENST00000523203.5:ENST00000515748.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	55	2	2.26792	3.782855	5.29779	0.0179973	3.80479e-4	0.106756	0.0176313
chr1	182852934	182853024	273115	0	+	0.533333	(0.515,0.57]	chr1	31878	2	SS3_PROX	SS3_PROX:INTRON	DHX9	ENSG00000135829.17	ENST00000367549.4:ENST00000483416.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	37	2	2.43589	3.7828150000000003	5.12974	0.0370871	4.54392e-4	0.139194	0.0192381
chr1	155509430	155509530	562358	0	-	0.41	(0.408,0.44]	chr1	67101	266	INTRON	INTRON	ASH1L	ENSG00000116539.14	ENST00000676814.1:ENST00000392403.8:ENST00000368346.7:ENST00000677213.1:ENST00000678117.1:ENST00000679097.1:ENST00000679333.1:ENST00000677042.1:ENST00000678699.1:ENST00000677825.1:ENST00000679133.1:ENST00000548830.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	41	2	2.43988	3.78278	5.12568	0.0398236	7.90919e-4	0.143072	0.0258324
chr10	92651309	92651407	4491285	0	+	0.530612	(0.515,0.57]	chr10	413654	4	INTRON	INTRON	KIF11	ENSG00000138160.7	ENST00000676757.1:ENST00000676647.1:ENST00000260731.5:ENST00000676621.1:ENST00000677720.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	36	2	2.46104	3.7827599999999997	5.10448	0.032841	0.0010345	0.145164	0.029231300000000002
chr14	101999107	101999202	5820591	0	+	0.526316	(0.515,0.57]	chr14	552058	15	INTRON	INTRON	DYNC1H1	ENSG00000197102.14	ENST00000360184.10:ENST00000684561.1:ENST00000680313.1:ENST00000679720.1:ENST00000680715.1:ENST00000681283.1:ENST00000681822.1:ENST00000679910.1:ENST00000681574.1:ENST00000645039.2:ENST00000645149.2:ENST00000680200.1:ENST00000680120.1:ENST00000644881.2:ENST00000681066.1:ENST00000680423.1:ENST00000681536.1:ENST00000679486.1:ENST00000681010.1:ENST00000679629.1:ENST00000681123.1:ENST00000680874.1:ENST00000680137.1:ENST00000643508.2:ENST00000680808.1:ENST00000681311.1:ENST00000681859.1:ENST00000643684.1:ENST00000643958.2:ENST00000680001.1:ENST00000681668.1:ENST00000645114.2:ENST00000681751.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	36	2	2.46104	3.7827599999999997	5.10448	0.032841	0.0010345	0.145164	0.029231300000000002
chr11	748575	748675	4720344	0	+	0.42	(0.408,0.44]	chr11	436387	6	INTRON	INTRON	TALDO1	ENSG00000177156.11	ENST00000528070.5:ENST00000532685.1:ENST00000528097.5:ENST00000530440.1:ENST00000319006.8:ENST00000530119.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	112	2	3.63226	3.7826750000000002	3.93309	1.78185e-4	2.75919e-5	0.0121697	0.00414987
chr12	53442197	53442286	5142828	0	+	0.426966	(0.408,0.44]	chr12	485350	5	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PRR13	ENSG00000205352.11	ENST00000549924.5:ENST00000551003.5:ENST00000429243.7:ENST00000552846.1:ENST00000549068.5:ENST00000549740.5:ENST00000546581.5:ENST00000549581.5:ENST00000547368.5:ENST00000379786.8:ENST00000551945.5:ENST00000551365.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	112	2	3.42828	3.782575	4.13687	9.1223e-5	6.40544e-5	0.00798362	0.00711194
chr15	34534969	34535067	6133404	0	-	0.44898	(0.44,0.476]	chr15	584353	4	INTRON	INTRON	GOLGA8B	ENSG00000215252.12	ENST00000683415.1:ENST00000342314.9:ENST00000569100.5:ENST00000484716.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	68	2	1.55662	3.782545	6.00847	0.0688347	1.04381e-5	0.184298	0.00235341
chr21	28940919	28941019	7436144	0	-	0.47	(0.44,0.476]	chr21	758300	3	SS5_PROX	SS5_PROX:INTRON	LTN1	ENSG00000198862.14	ENST00000614971.4:ENST00000389194.7:ENST00000361371.10	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	2.9586	3.782535	4.60647	0.0102339	0.00758318	0.0850389	0.0773151
chr3	13394876	13394975	1618345	0	-	0.464646	(0.44,0.476]	chr3	167225	32	INTRON	INTRON	NUP210	ENSG00000132182.13	ENST00000254508.7:ENST00000420141.3:ENST00000695492.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	38	2	2.9586	3.782535	4.60647	0.0102339	0.00758318	0.0850389	0.0773151
chr2	113925056	113925155	854597	0	+	0.484848	(0.476,0.515]	chr2	95910	77	INTRON	INTRON	ACTR3	ENSG00000115091.12	ENST00000443297.5:ENST00000263238.7:ENST00000415792.5:ENST00000446821.5:ENST00000535589.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	62	2	2.41328	3.782355	5.15143	0.00355364	0.00166579	0.0547657	0.0369207
chr12	50995229	50995329	5324458	0	-	0.51	(0.476,0.515]	chr12	507670	2	SS5_PROX	SS5_PROX:INTRON	SLC11A2	ENSG00000110911.17	ENST00000547688.7:ENST00000644495.1:ENST00000643884.1:ENST00000546636.5:ENST00000547198.5:ENST00000646264.1:ENST00000394904.9:ENST00000262052.9:ENST00000643123.1:ENST00000646740.1:ENST00000642227.1:ENST00000541174.6:ENST00000545993.7:ENST00000546743.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	52	2	2.72507	3.7823450000000003	4.83962	0.00480934	0.0029369	0.0602209	0.0496505
chr22	41275914	41276012	7591049	0	-	0.5	(0.476,0.515]	chr22	777367	8	INTRON	INTRON	RANGAP1	ENSG00000100401.20	ENST00000356244.8:ENST00000405486.5:ENST00000455915.6:ENST00000452543.5:ENST00000418067.1	protein_coding	protein_coding	protein_coding	protein_coding	2	52	2	2.72507	3.7823450000000003	4.83962	0.00480934	0.0029369	0.0602209	0.0496505
chr3	45720500	45720600	1417361	0	+	0.34	(0.32,0.35]	chr3	148697	5	INTRON	INTRON	SACM1L	ENSG00000211456.13	ENST00000455997.5:ENST00000418611.5:ENST00000672477.1:ENST00000441228.5:ENST00000389061.10:ENST00000672858.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	42	2	3.0247	3.78229	4.53988	0.0202178	0.00671684	0.109913	0.0738715
chr17	30745457	30745557	6589942	0	+	0.46	(0.44,0.476]	chr17	640860	17	INTRON	INTRON	SUZ12P1	ENSG00000264538.7	ENST00000578070.5:ENST00000579526.5:ENST00000690405.1:ENST00000497969.6:ENST00000578195.6:ENST00000582557.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	1	38	2	2.66433	3.782165	4.9	0.0194358	0.00423315	0.119831	0.0572185
chr5	109810674	109810774	2450232	0	+	0.46	(0.44,0.476]	chr5	234656	60	INTRON	INTRON	MAN2A1	ENSG00000112893.10	ENST00000261483.5:ENST00000502261.5:ENST00000508043.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	38	2	2.66433	3.782165	4.9	0.0194358	0.00423315	0.119831	0.0572185
chrX	154562953	154563053	7739250	0	+	0.47	(0.44,0.476]	chrX	792363	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	IKBKG	ENSG00000269335.7	ENST00000440286.6:ENST00000422680.6:ENST00000618670.4:ENST00000612051.1:ENST00000445622.6:ENST00000413620.6:ENST00000689906.1:ENST00000693029.1:ENST00000687445.1:ENST00000686774.1:ENST00000594239.6:ENST00000692948.1:ENST00000615874.4:ENST00000619941.4:ENST00000617207.4:ENST00000611176.4:ENST00000615186.5:ENST00000611071.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	38	2	2.66433	3.782165	4.9	0.0194358	0.00423315	0.119831	0.0572185
chr11	3388038	3388136	4722910	0	+	0.387755	(0.378,0.408]	chr11	436986	27	INTRON	INTRON	TSSC2	ENSG00000223756.8	ENST00000685598.1:ENST00000691197.1:ENST00000533775.6:ENST00000690471.1:ENST00000529482.5:ENST00000693396.1:ENST00000685130.1:ENST00000526284.5:ENST00000526488.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	3	117	2	3.35676	3.78207	4.20738	2.33175e-4	2.43547e-5	0.013966	0.00386122
chr16	81491854	81491954	6405468	0	+	0.49	(0.476,0.515]	chr16	615026	460	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8	protein_coding	protein_coding	protein_coding	protein_coding	4	134	2	3.0627	3.78203	4.50136	2.02307e-4	3.84126e-6	0.0129814	0.00129553
chr2	167850218	167850318	1258302	0	-	0.39	(0.378,0.408]	chr2	133322	346	INTRON	INTRON	B3GALT1-AS1	ENSG00000235335.3	ENST00000430546.2:ENST00000657553.1:ENST00000670221.1:ENST00000436982.2	lncRNA	lncRNA	lncRNA	lncRNA	3	62	2	2.14029	3.781935	5.42358	0.0106742	8.39231e-4	0.0917199	0.0266487
chr15	22844150	22844249	5976577	0	+	0.232323	[0,0.28]	chr15	568403	40	INTRON	INTRON	NIPA2	ENSG00000140157.16	ENST00000560205.5:ENST00000398014.7:ENST00000359727.8:ENST00000674173.1:ENST00000560762.5:ENST00000337451.8:ENST00000559571.1:ENST00000674289.1:ENST00000674477.1:ENST00000398013.7:ENST00000674330.1:ENST00000560039.1:ENST00000539711.2:ENST00000561072.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	47	2	2.80396	3.7818	4.75964	0.0232081	0.0161429	0.118148	0.109464
chr4	23059854	23059954	1928724	0	+	0.26	[0,0.28]	chr4	193957	31	INTRON	INTRON	ENSG00000248837	ENSG00000248837.7	ENST00000659942.1:ENST00000655325.1:ENST00000652324.1:ENST00000653008.1:ENST00000666412.1:ENST00000667179.1:ENST00000661585.1:ENST00000653872.1:ENST00000660370.1:ENST00000667156.1:ENST00000658109.1:ENST00000653188.1:ENST00000666579.1:ENST00000663348.1	lncRNA	lncRNA	lncRNA	lncRNA	1	47	2	2.80396	3.7818	4.75964	0.0232081	0.0161429	0.118148	0.109464
chr3	25613508	25613607	1641613	0	-	0.434343	(0.408,0.44]	chr3	168459	4	INTRON	INTRON	TOP2B	ENSG00000077097.16	ENST00000264331.9:ENST00000413971.5:ENST00000435706.6:ENST00000475717.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	52	2	2.07919	3.781675	5.48416	0.0291499	5.43528e-4	0.14147	0.0215026
chr15	83066052	83066151	6249430	0	-	0.474747	(0.44,0.476]	chr15	596417	92	INTRON	INTRON	BTBD1	ENSG00000064726.10	ENST00000261721.9:ENST00000379403.2	protein_coding	protein_coding	protein_coding	protein_coding	1	43	2	3.12799	3.78162	4.43525	0.00897296	0.0050635	0.0849778	0.0621733
chr1	27806178	27806277	54842	0	+	0.333333	(0.32,0.35]	chr1	7068	40	INTRON	INTRON	STX12	ENSG00000117758.14	ENST00000373943.9:ENST00000440806.2	protein_coding	protein_coding	protein_coding	protein_coding	1	42	2	2.48693	3.78161	5.07629	0.0338094	0.00468114	0.146709	0.0600108
chr22	19085377	19085476	7551643	0	-	0.50505	(0.476,0.515]	chr22	771897	168	INTRON	INTRON	DGCR2	ENSG00000070413.20	ENST00000537045.5:ENST00000545799.5:ENST00000263196.12:ENST00000389262.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	92	2	1.73456	3.78159	5.82862	0.0140928	3.00692e-5	0.0959618	0.00436729
chr19	6251755	6251854	7128144	0	-	0.454545	(0.44,0.476]	chr19	717607	207	INTRON	INTRON	MLLT1	ENSG00000130382.9	ENST00000252674.9	protein_coding	protein_coding	protein_coding	protein_coding	2	51	2	2.21079	3.78153	5.35227	0.0194581	8.47974e-4	0.119831	0.0267232
chr1	246631493	246631593	350638	0	+	0.24	[0,0.28]	chr1	40509	2	SS3_PROX	SS3_PROX:INTRON	CNST	ENSG00000162852.14	ENST00000483271.1:ENST00000366513.9:ENST00000366512.7:ENST00000366511.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	47	2	2.5055	3.78149	5.05748	0.0359431	0.0113653	0.152322	0.0886611
chr5	6747397	6747492	2316184	0	+	0.273684	[0,0.28]	chr5	224304	6	INTRON	INTRON	TENT4A	ENSG00000112941.14	ENST00000230859.8:ENST00000631941.2:ENST00000511764.5:ENST00000514697.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	47	2	2.5055	3.78149	5.05748	0.0359431	0.0113653	0.152322	0.0886611
chr12	31318664	31318764	5302781	0	-	0.29	(0.28,0.32]	chr12	504668	132	INTRON	INTRON	SINHCAF	ENSG00000139146.14	ENST00000337682.9:ENST00000539409.5:ENST00000454658.6:ENST00000542983.1:ENST00000539004.5:ENST00000543615.1:ENST00000536836.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	48	2	2.73077	3.7812099999999997	4.83165	0.0220748	0.00527257	0.115395	0.0656295
chr1	88707711	88707811	156003	0	+	0.32	(0.28,0.32]	chr1	17045	227	INTRON	INTRON	PKN2	ENSG00000065243.20	ENST00000316005.11:ENST00000370521.8:ENST00000370513.9	protein_coding	protein_coding	protein_coding	protein_coding	1	44	2	2.97333	3.78104	4.58875	0.0230574	0.00857834	0.118056	0.083729
chrX	121252010	121252110	7715710	0	+	0.29	(0.28,0.32]	chrX	789390	658	INTRON	INTRON	ENSG00000286163	ENSG00000286163.1	ENST00000651788.1	lncRNA	lncRNA	lncRNA	lncRNA	1	44	2	2.97333	3.78104	4.58875	0.0230574	0.00857834	0.118056	0.083729
chr3	194484993	194485093	1891181	0	-	0.41	(0.408,0.44]	chr3	189246	169	INTRON	INTRON	ATP13A3	ENSG00000133657.17	ENST00000687055.1:ENST00000645538.1:ENST00000645319.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	61	2	2.03431	3.780945	5.52758	0.0154896	4.54953e-4	0.108998	0.0196892
chr2	144515248	144515348	1241764	0	-	0.38	(0.378,0.408]	chr2	131754	9	INTRON	INTRON	ZEB2	ENSG00000169554.23	ENST00000636471.1:ENST00000627532.3:ENST00000638128.1:ENST00000637304.1:ENST00000419938.5:ENST00000409487.7:ENST00000636732.2:ENST00000636026.2:ENST00000675069.1:ENST00000689298.1:ENST00000539609.7:ENST00000558170.6:ENST00000303660.8:ENST00000427902.5:ENST00000637267.2:ENST00000392861.6:ENST00000431672.4:ENST00000409211.5:ENST00000465308.5:ENST00000434448.5:ENST00000472146.5:ENST00000461784.3:ENST00000476394.5:ENST00000637591.2:ENST00000479735.1:ENST00000453352.5:ENST00000435831.5:ENST00000444559.5:ENST00000630572.2:ENST00000484313.3:ENST00000629955.1:ENST00000465070.5:ENST00000636445.1:ENST00000629520.2:ENST00000470879.5:ENST00000462355.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	159	2	2.89707	3.7807250000000003	4.66438	1.23878e-4	3.95052e-6	0.00952291	0.00143365
chr16	29456447	29456545	6335117	0	+	0.510204	(0.476,0.515]	chr16	606765	1	EXON_MRNA	EXON_MRNA:INTRON	SLX1B:SLX1B-SULT1A4	ENSG00000181625.17:ENSG00000260280.5	ENST00000330181.9:ENST00000565219.1:ENST00000351581.4:ENST00000344620.10:ENST00000564950.5:ENST00000395400.4	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron	2	85	2	3.58243	3.78064	3.97885	6.18479e-4	1.30749e-4	0.0223951	0.0103941
chr14	103653463	103653563	5827887	0	+	0.5	(0.476,0.515]	chr14	553054	236	INTRON	INTRON	KLC1	ENSG00000126214.22	ENST00000557172.5:ENST00000348520.10:ENST00000380038.7:ENST00000334553.11:ENST00000555467.1:ENST00000389744.8:ENST00000555836.5:ENST00000347839.10:ENST00000553286.5:ENST00000557575.5:ENST00000452929.6:ENST00000554280.5:ENST00000557450.5:ENST00000554228.5:ENST00000634686.1:ENST00000246489.11:ENST00000445352.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	38	2	2.94692	3.78047	4.61402	0.00947755	0.00794331	0.0817766	0.0797304
chr19	19296188	19296288	7154450	0	-	0.48	(0.476,0.515]	chr19	723229	148	INTRON	INTRON	SUGP1	ENSG00000105705.16	ENST00000589144.5:ENST00000247001.10:ENST00000588731.6:ENST00000591007.6:ENST00000587119.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	38	2	2.94692	3.78047	4.61402	0.00947755	0.00794331	0.0817766	0.0797304
chr7	149197733	149197832	3445349	0	+	0.585859	(0.57,1]	chr7	321361	16	INTRON	INTRON	ZNF282	ENSG00000170265.12	ENST00000610704.5:ENST00000479907.1	protein_coding	protein_coding	protein_coding	protein_coding	1	26	2	2.99729	3.78047	4.56365	0.00538023	0.00129848	0.0642754	0.0333764
chr1	229496645	229496744	653209	0	-	0.373737	(0.35,0.378]	chr1	77379	2	INTRON	INTRON	NUP133	ENSG00000069248.12	ENST00000261396.6	protein_coding	protein_coding	protein_coding	protein_coding	1	44	2	2.24535	3.780455	5.31556	0.0647516	4.97087e-4	0.179192	0.0201536
chr14	37160280	37160380	5877890	0	-	0.32	(0.28,0.32]	chr14	558013	2849	INTRON	INTRON	SLC25A21	ENSG00000183032.12	ENST00000331299.6:ENST00000555449.5:ENST00000557611.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	44	2	2.46018	3.7804349999999998	5.10069	0.0375904	0.00610574	0.156054	0.0676501
chr3	195951818	195951915	1896620	0	-	0.298969	(0.28,0.32]	chr3	189779	28	EXON_LNCRNA	EXON_LNCRNA:INTRON	ENSG00000260261	ENSG00000260261.2	ENST00000607976.2:ENST00000641484.1:ENST00000570130.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	4	171	2	2.9937	3.7804349999999998	4.56717	3.00958e-4	1.67656e-5	0.0155054	0.00329329
chr1	114459706	114459805	527379	0	-	0.353535	(0.35,0.378]	chr1	62137	256	INTRON	INTRON	TRIM33	ENSG00000197323.12	ENST00000358465.7:ENST00000369543.6:ENST00000448034.5	protein_coding	protein_coding	protein_coding	protein_coding	1	43	2	2.66547	3.78035	4.89523	0.0233639	0.00253947	0.118323	0.0465056
chr4	896059	896159	2093920	0	-	0.57	(0.515,0.57]	chr4	206943	2	SS5_PROX	SS5_PROX:INTRON	GAK	ENSG00000178950.18	ENST00000314167.9:ENST00000511163.5:ENST00000505819.5:ENST00000507580.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	183	2	3.6148	3.780315	3.94583	4.97853e-6	2.47635e-7	0.00164647	2.42723e-4
chr1	229632745	229632845	333700	0	+	0.39	(0.378,0.408]	chr1	38873	3	SS5_PROX	SS5_PROX:INTRON	URB2	ENSG00000135763.10	ENST00000258243.7	protein_coding	protein_coding	protein_coding	protein_coding	1	42	2	2.78946	3.780255	4.77105	0.0158859	0.00330823	0.101453	0.0527031
chr15	41705335	41705434	6007311	0	+	0.393939	(0.378,0.408]	chr15	571658	58	INTRON	INTRON	MGA	ENSG00000174197.18	ENST00000566718.6:ENST00000545763.6:ENST00000570161.6:ENST00000566586.6:ENST00000219905.13	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	42	2	2.78946	3.780255	4.77105	0.0158859	0.00330823	0.101453	0.0527031
chr2	17782235	17782333	706844	0	+	0.326531	(0.32,0.35]	chr2	81910	4	UTR3	UTR3:EXON_MRNA	GEN1	ENSG00000178295.15	ENST00000317402.11:ENST00000381254.7	protein_coding	protein_coding	protein_coding	protein_coding	2	69	2	2.84076	3.7802299999999995	4.7197	0.00568521	0.0027933	0.0678837	0.0469265
chr3	43693604	43693704	1410199	0	+	0.33	(0.32,0.35]	chr3	147907	17	INTRON	INTRON	ABHD5	ENSG00000011198.10	ENST00000643520.1:ENST00000456453.5:ENST00000458276.7:ENST00000486764.1:ENST00000649763.1:ENST00000643140.1:ENST00000643500.1:ENST00000644371.2:ENST00000013894.3:ENST00000646378.1:ENST00000643477.1:ENST00000646799.1:ENST00000454293.2:ENST00000642351.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	49	2	3.61507	3.7801799999999997	3.94529	0.0693433	6.48785e-4	0.184298	0.0230814
chr20	36608700	36608800	7266075	0	+	0.51	(0.476,0.515]	chr20	738364	3	INTRON	INTRON	RAB5IF	ENSG00000101084.19	ENST00000344795.8:ENST00000492721.5:ENST00000483815.5:ENST00000373852.9:ENST00000342422.3:ENST00000494506.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	38	2	2.65268	3.780145	4.90761	0.0201975	0.00386428	0.121243	0.0542786
chr22	21818841	21818941	7560898	0	-	0.49	(0.476,0.515]	chr22	773388	106	INTRON	INTRON	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	2.65268	3.780145	4.90761	0.0201975	0.00386428	0.121243	0.0542786
chr3	158379191	158379291	1540980	0	+	0.49	(0.476,0.515]	chr3	160318	239	INTRON	INTRON	RSRC1	ENSG00000174891.14	ENST00000480820.5:ENST00000295930.7:ENST00000471994.5:ENST00000683733.1:ENST00000682221.1:ENST00000683831.1:ENST00000683516.1:ENST00000482822.3:ENST00000476899.6:ENST00000464171.5:ENST00000611884.5:ENST00000682164.1:ENST00000684604.1:ENST00000683899.1:ENST00000682500.1:ENST00000684683.1:ENST00000312179.10:ENST00000475278.6:ENST00000480119.5:ENST00000471911.5:ENST00000683137.1:ENST00000684353.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	38	2	2.65268	3.780145	4.90761	0.0201975	0.00386428	0.121243	0.0542786
chr8	31044572	31044672	3728039	0	+	0.51	(0.476,0.515]	chr8	346522	102	INTRON	INTRON	WRN	ENSG00000165392.11	ENST00000650667.1:ENST00000298139.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	38	2	2.65268	3.780145	4.90761	0.0201975	0.00386428	0.121243	0.0542786
chr4	26421099	26421193	1937694	0	+	0.425532	(0.408,0.44]	chr4	194444	5	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	RBPJ	ENSG00000168214.22	ENST00000681799.1:ENST00000681403.1:ENST00000342295.6:ENST00000512671.6:ENST00000345843.8:ENST00000361572.10:ENST00000514380.5:ENST00000348160.9:ENST00000681506.1:ENST00000509158.6:ENST00000691085.1:ENST00000692303.1:ENST00000681856.1:ENST00000681025.1:ENST00000681679.1:ENST00000680210.1:ENST00000355476.8:ENST00000680140.1:ENST00000680511.1:ENST00000510778.7:ENST00000679698.1:ENST00000679469.1:ENST00000681484.1:ENST00000505958.6:ENST00000507561.5:ENST00000507574.5:ENST00000515573.5:ENST00000689192.1:ENST00000680928.1:ENST00000681260.1:ENST00000681093.1:ENST00000504423.2:ENST00000342320.8:ENST00000504907.5:ENST00000681264.1:ENST00000680204.1:ENST00000515023.6:ENST00000506903.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	38	2	2.96007	3.77993	4.59979	0.0109537	0.00753901	0.0873034	0.0773151
chr14	34563475	34563575	5866418	0	-	0.52	(0.515,0.57]	chr14	557141	3	SS3_PROX	SS3_PROX:INTRON	SNX6	ENSG00000129515.20	ENST00000362031.10:ENST00000396526.7:ENST00000652385.1:ENST00000556162.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	48	2	2.87626	3.77968	4.6831	0.00471288	0.00136224	0.0600108	0.0339121
chr3	49406311	49406411	1694006	0	-	0.31	(0.28,0.32]	chr3	173708	2	SS5_PROX	SS5_PROX:INTRON	RHOA	ENSG00000067560.14	ENST00000678200.1:ENST00000422781.6:ENST00000676712.2:ENST00000678921.2:ENST00000445425.6:ENST00000454011.7:ENST00000418115.6:ENST00000679208.1:ENST00000677684.1:ENST00000431929.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	59	2	2.08149	3.7796399999999997	5.47779	0.031124	0.00187048	0.143644	0.0390476
chr4	55872854	55872953	1961383	0	+	0.313131	(0.28,0.32]	chr4	196637	5	INTRON	INTRON	EXOC1	ENSG00000090989.18	ENST00000381295.7:ENST00000346134.11:ENST00000349598.6	protein_coding	protein_coding	protein_coding	protein_coding	2	59	2	2.08149	3.7796399999999997	5.47779	0.031124	0.00187048	0.143644	0.0390476
chr11	65626416	65626507	4806749	0	+	0.318681	(0.28,0.32]	chr11	446837	5	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PCNX3	ENSG00000197136.5	ENST00000355703.4:ENST00000530174.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	49	2	2.87382	3.7795449999999997	4.68527	0.014868	0.00819419	0.0989021	0.0810802
chr8	23574975	23575072	3715566	0	+	0.319588	(0.28,0.32]	chr8	345245	33	UTR3	UTR3:EXON_MRNA	SLC25A37	ENSG00000147454.14	ENST00000519973.6	protein_coding	protein_coding	protein_coding	protein_coding	1	49	2	2.87382	3.7795449999999997	4.68527	0.014868	0.00819419	0.0989021	0.0810802
chr17	76725855	76725955	6844214	0	-	0.42	(0.408,0.44]	chr17	677081	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	JMJD6	ENSG00000070495.15	ENST00000617192.4:ENST00000445478.6:ENST00000303996.10:ENST00000542934.5:ENST00000397625.9:ENST00000585429.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	38	2	2.66579	3.7795300000000003	4.89327	0.019342	0.00458906	0.119831	0.0595107
chr3	185776384	185776484	1885862	0	-	0.42	(0.408,0.44]	chr3	188573	777	INTRON	INTRON	IGF2BP2	ENSG00000073792.16	ENST00000382199.7:ENST00000346192.7:ENST00000457616.6:ENST00000421047.3:ENST00000461957.5:ENST00000493302.5:ENST00000466476.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	38	2	2.66579	3.7795300000000003	4.89327	0.019342	0.00458906	0.119831	0.0595107
chr6	85592790	85592886	3150935	0	-	0.4375	(0.408,0.44]	chr6	293851	11	INTRON	INTRON	ENSG00000271793:SNX14	ENSG00000271793.2:ENSG00000135317.14	ENST00000682083.1:ENST00000683074.1:ENST00000681965.1:ENST00000682171.1:ENST00000684150.1:ENST00000683785.1:ENST00000682497.1:ENST00000684647.1:ENST00000683643.1:ENST00000682023.1:ENST00000682022.1:ENST00000683542.1:ENST00000683126.1:ENST00000683857.1:ENST00000683898.1:ENST00000682854.1:ENST00000682491.1:ENST00000682174.1:ENST00000684239.1:ENST00000682939.1:ENST00000684570.1:ENST00000682057.1:ENST00000682878.1:ENST00000683880.1:ENST00000684422.1:ENST00000682504.1:ENST00000683726.1:ENST00000684680.1:ENST00000683196.1:ENST00000683458.1:ENST00000683803.1:ENST00000684281.1:ENST00000682991.1:ENST00000683754.1:ENST00000683481.1:ENST00000682455.1:ENST00000682034.1:ENST00000684451.1:ENST00000683583.1:ENST00000682776.1:ENST00000683873.1:ENST00000683878.1:ENST00000683195.1:ENST00000682995.1:ENST00000682374.1:ENST00000683698.1:ENST00000682454.1:ENST00000682694.1:ENST00000682412.1:ENST00000682682.1:ENST00000346348.7:ENST00000314673.8:ENST00000682633.1:ENST00000683085.1:ENST00000682688.1:ENST00000684319.1:ENST00000683577.1:ENST00000682709.1:ENST00000684299.1:ENST00000682133.1:ENST00000682594.1:ENST00000683473.1:ENST00000682106.1:ENST00000683364.1:ENST00000683436.1:ENST00000684220.1:ENST00000683909.1:ENST00000684118.1:ENST00000681981.1:ENST00000682738.1:ENST00000509338.6:ENST00000684717.1:ENST00000682660.1:ENST00000683073.1:ENST00000515216.6:ENST00000684581.1:ENST00000683479.1:ENST00000682464.1:ENST00000684108.1:ENST00000682514.1:ENST00000684017.1:ENST00000684273.1:ENST00000513865.5:ENST00000505648.5:ENST00000369627.6:ENST00000508658.6:ENST00000683097.1:ENST00000683541.1:ENST00000683759.1:ENST00000369635.7:ENST00000684462.1:ENST00000682168.1:ENST00000513869.2:ENST00000514419.6:ENST00000683999.1:ENST00000503906.1:ENST00000683727.1:ENST00000684183.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	38	2	2.66579	3.7795300000000003	4.89327	0.019342	0.00458906	0.119831	0.0595107
chr9	112323455	112323555	4317859	0	-	0.41	(0.408,0.44]	chr9	397079	252	INTRON	INTRON	PTBP3	ENSG00000119314.16	ENST00000334318.10:ENST00000458258.5:ENST00000374257.6:ENST00000374255.6:ENST00000343327.6:ENST00000487997.1:ENST00000210227.4:ENST00000450374.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	38	2	2.66579	3.7795300000000003	4.89327	0.019342	0.00458906	0.119831	0.0595107
chr2	55687144	55687244	1125703	0	-	0.5	(0.476,0.515]	chr2	120835	1	SS5_PROX	SS5_PROX:INTRON	PNPT1	ENSG00000138035.15	ENST00000447944.7:ENST00000415374.5:ENST00000260604.8:ENST00000429805.1:ENST00000625249.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	41	2	2.9435	3.779345	4.61519	0.00929849	0.00528365	0.0817766	0.0656295
chr7	152843156	152843256	3451363	0	+	0.32	(0.28,0.32]	chr7	322567	177	INTRON	INTRON	ACTR3B	ENSG00000133627.18	ENST00000377776.7:ENST00000256001.13:ENST00000397282.2:ENST00000479402.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	104	2	3.63276	3.779345	3.92593	0.00114475	1.77822e-4	0.0308149	0.0116289
chr17	75230467	75230560	6674528	0	+	0.505376	(0.476,0.515]	chr17	651408	10	INTRON	INTRON	NUP85	ENSG00000125450.11	ENST00000245544.9:ENST00000579324.5:ENST00000581104.5:ENST00000579298.5:ENST00000578830.5:ENST00000579557.5:ENST00000577645.5:ENST00000583070.5:ENST00000580879.5:ENST00000540768.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	51	2	2.58615	3.77934	4.97253	0.00515536	0.00311573	0.0650394	0.0498063
chr9	128955271	128955367	4207926	0	+	0.322917	(0.32,0.35]	chr9	385258	21	INTRON	INTRON	NUP188	ENSG00000095319.14	ENST00000372577.2:ENST00000491990.5:ENST00000550219.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	67	2	1.93031	3.7791300000000003	5.62795	0.0231421	7.01392e-4	0.126939	0.024224
chr1	67428739	67428837	477620	0	-	0.265306	[0,0.28]	chr1	57498	21	INTRON	INTRON	SERBP1	ENSG00000142864.15	ENST00000370994.8:ENST00000361219.11:ENST00000370995.6:ENST00000370990.5:ENST00000490406.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	72	2	2.30641	3.779095	5.25178	0.0213596	0.0022031	0.113755	0.0435144
chr2	63592429	63592526	795784	0	+	0.484536	(0.476,0.515]	chr2	88904	16	INTRON	INTRON	MDH1	ENSG00000014641.21	ENST00000544381.4:ENST00000485781.5:ENST00000409908.5:ENST00000233114.13:ENST00000539945.7:ENST00000442225.5:ENST00000409476.5:ENST00000485155.1:ENST00000436321.5:ENST00000454035.5:ENST00000472098.5:ENST00000421012.2:ENST00000432309.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	51	2	2.19809	3.77902	5.35995	0.020317	7.54256e-4	0.121522	0.0251179
chrX	23785039	23785135	7630714	0	+	0.489583	(0.476,0.515]	chrX	781422	4	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	SAT1	ENSG00000130066.17	ENST00000379270.5:ENST00000379254.5:ENST00000489394.5:ENST00000474223.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	51	2	2.19809	3.77902	5.35995	0.020317	7.54256e-4	0.121522	0.0251179
chr5	65948886	65948986	2371067	0	+	0.47	(0.44,0.476]	chr5	228472	217	INTRON	INTRON	ERBIN	ENSG00000112851.15	ENST00000380943.6:ENST00000507490.1:ENST00000416865.6:ENST00000380935.5:ENST00000284037.10:ENST00000380938.6:ENST00000511297.5:ENST00000506030.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	61	2	1.98146	3.779005	5.57655	0.0186013	3.3967e-4	0.117264	0.0170719
chr7	72903883	72903983	3330037	0	+	0.46	(0.44,0.476]	chr7	309565	124	INTRON	INTRON	POM121	ENSG00000196313.13	ENST00000627934.3:ENST00000395270.5	protein_coding	protein_coding	protein_coding	protein_coding	3	61	2	1.98146	3.779005	5.57655	0.0186013	3.3967e-4	0.117264	0.0170719
chr19	2770978	2771077	7116636	0	-	0.59596	(0.57,1]	chr19	715508	3	INTRON	INTRON	SGTA	ENSG00000104969.11	ENST00000221566.7:ENST00000678109.1:ENST00000676984.1:ENST00000677513.1:ENST00000676943.1:ENST00000677731.1:ENST00000679138.1:ENST00000677562.1:ENST00000678595.1:ENST00000677754.1:ENST00000677149.1:ENST00000678577.1:ENST00000589251.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	26	2	2.66801	3.778995	4.88998	0.0169968	4.016e-4	0.110899	0.0185763
chr7	100315121	100315221	3586559	0	-	0.54	(0.515,0.57]	chr7	334330	140	INTRON	INTRON	PMS2P1	ENSG00000078319.11	ENST00000685724.1:ENST00000692351.1:ENST00000685541.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	2	46	2	2.51561	3.77893	5.04225	0.00635044	0.00131841	0.0723103	0.0331539
chr12	113305994	113306094	5418299	0	-	0.47	(0.44,0.476]	chr12	517839	1	SS5_PROX	SS5_PROX:INTRON	SLC8B1	ENSG00000089060.12	ENST00000552014.5:ENST00000202831.7:ENST00000680972.1:ENST00000552565.5:ENST00000550672.5:ENST00000550047.5:ENST00000549069.5:ENST00000546737.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	42	2	3.02751	3.778925	4.53034	0.00715968	0.00672609	0.0738715	0.0723634
chr1	1389651	1389729	359808	0	-	0.512821	(0.476,0.515]	chr1	41768	2	SS3_PROX	SS3_PROX:INTRON	CCNL2	ENSG00000221978.13	ENST00000400809.8:ENST00000480479.5:ENST00000482621.5:ENST00000496007.5:ENST00000482365.5:ENST00000481223.6:ENST00000418865.6:ENST00000505849.5:ENST00000488340.5:ENST00000492998.5:ENST00000469113.5:ENST00000480646.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	301	2	3.13679	3.778695	4.4206	9.79567e-7	3.44585e-7	5.60831e-4	3.20374e-4
chr7	130193620	130193719	3638635	0	-	0.383838	(0.378,0.408]	chr7	338395	4	INTRON	INTRON	TMEM209	ENSG00000146842.17	ENST00000397622.7:ENST00000473456.5:ENST00000462753.5	protein_coding	protein_coding	protein_coding	protein_coding	6	86	2	1.73859	3.7786500000000003	5.81871	0.0123927	1.62088e-4	0.0973643	0.0116382
chr12	96367328	96367427	5394954	0	-	0.222222	[0,0.28]	chr12	514463	321	INTRON	INTRON	CDK17	ENSG00000059758.8	ENST00000261211.8:ENST00000543119.6:ENST00000542666.5:ENST00000551816.5:ENST00000552496.5:ENST00000552262.1	protein_coding	protein_coding	protein_coding	protein_coding	1	52	2	2.64309	3.778615	4.91414	0.0308646	0.0064519	0.13151	0.0730725
chr1	86986931	86987031	154318	0	+	0.48	(0.476,0.515]	chr1	16969	115	INTRON	INTRON	HS2ST1	ENSG00000153936.18	ENST00000370550.10:ENST00000370551.8:ENST00000687893.1:ENST00000693745.1:ENST00000689904.1:ENST00000690674.1:ENST00000591456.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	40	2	2.63168	3.778485	4.92529	0.0237106	0.00180221	0.118716	0.0392772
chr16	30727507	30727602	6338955	0	+	0.505263	(0.476,0.515]	chr16	607822	14	INTRON	INTRON	SRCAP	ENSG00000080603.17	ENST00000262518.9:ENST00000395059.6	protein_coding	protein_coding	protein_coding	protein_coding	1	40	2	2.63168	3.778485	4.92529	0.0237106	0.00180221	0.118716	0.0392772
chr3	39406715	39406719	1401777	0	+	0.5	(0.476,0.515]	chr3	147202	1	EXON_MRNA	EXON_MRNA	RPSA	ENSG00000168028.14	ENST00000477325.1:ENST00000475346.1:ENST00000487876.1	protein_coding	retained_intron	protein_coding	retained_intron	1	40	2	2.63168	3.778485	4.92529	0.0237106	0.00180221	0.118716	0.0392772
chr3	196331780	196331880	1898734	0	-	0.5	(0.476,0.515]	chr3	190145	38	INTRON	INTRON	TM4SF19	ENSG00000145107.16	ENST00000446879.5:ENST00000273695.4:ENST00000454715.5	protein_coding	protein_coding	protein_coding	protein_coding	1	40	2	2.63168	3.778485	4.92529	0.0237106	0.00180221	0.118716	0.0392772
chr16	70126660	70126759	6383557	0	+	0.353535	(0.35,0.378]	chr16	613459	56	INTRON	INTRON	PDPR	ENSG00000090857.14	ENST00000288050.9:ENST00000561920.5:ENST00000568530.5:ENST00000398122.7:ENST00000565186.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	41	2	3.16371	3.7783700000000002	4.39303	0.0237246	0.00383956	0.118716	0.0562562
chr17	32365888	32365987	6598146	0	+	0.424242	(0.408,0.44]	chr17	641924	4	SS5_PROX	SS5_PROX:INTRON	ZNF207	ENSG00000010244.19	ENST00000321233.10:ENST00000394673.6:ENST00000394670.9:ENST00000342555.10:ENST00000577908.5:ENST00000581531.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	86	2	3.28852	3.77834	4.26816	0.00287185	1.58618e-5	0.0474836	0.00300937
chr9	120772453	120772553	4335249	0	-	0.34	(0.32,0.35]	chr9	398230	3	SS5_PROX	SS5_PROX:INTRON	FBXW2	ENSG00000119402.18	ENST00000493559.1:ENST00000684405.1:ENST00000684001.1:ENST00000684047.1:ENST00000608872.6:ENST00000453291.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	96	2	3.60968	3.77813	3.94658	0.00105196	1.32883e-4	0.029592	0.00993659
chr10	5700636	5700736	4384502	0	+	0.34	(0.32,0.35]	chr10	404466	5	INTRON	INTRON	TASOR2	ENSG00000108021.21	ENST00000695832.1:ENST00000328090.9:ENST00000695737.1:ENST00000695833.1:ENST00000695834.1:ENST00000695835.1:ENST00000695836.1:ENST00000473789.5:ENST00000477043.5:ENST00000496681.5:ENST00000480839.6:ENST00000645567.1:ENST00000482419.1:ENST00000463468.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	45	2	2.37794	3.77808	5.17822	0.0498601	0.00115625	0.156383	0.0313436
chr10	16449376	16449476	4397906	0	+	0.34	(0.32,0.35]	chr10	406031	115	INTRON	INTRON	PTER	ENSG00000165983.15	ENST00000423462.6:ENST00000378000.5:ENST00000535784.7	protein_coding	protein_coding	protein_coding	protein_coding	1	45	2	2.37794	3.77808	5.17822	0.0498601	0.00115625	0.156383	0.0313436
chr1	112637363	112637463	186504	0	+	0.4	(0.378,0.408]	chr1	20636	171	INTRON	INTRON	CAPZA1	ENSG00000116489.13	ENST00000485542.5:ENST00000476936.5:ENST00000263168.4:ENST00000498626.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	53	2	2.74646	3.77807	4.80968	0.00679828	0.00271684	0.0711802	0.0481064
chr2	27653285	27653384	1087902	0	-	0.373737	(0.35,0.378]	chr2	116706	26	UTR3	UTR3:EXON_MRNA	SUPT7L	ENSG00000119760.16	ENST00000337768.10:ENST00000404798.6:ENST00000406540.5:ENST00000405491.5:ENST00000464789.2	protein_coding	protein_coding	protein_coding	protein_coding	1	40	2	2.57049	3.7780500000000004	4.98561	0.0262669	0.00474226	0.133676	0.0600445
chr6	35648941	35649041	3087120	0	-	0.46	(0.44,0.476]	chr6	288789	57	INTRON	INTRON	FKBP5	ENSG00000096060.15	ENST00000536438.5:ENST00000539068.5:ENST00000357266.9:ENST00000542713.1	protein_coding	protein_coding	protein_coding	protein_coding	1	44	2	3.22192	3.7776899999999998	4.33346	0.0120349	0.00360821	0.0962115	0.0533855
chr1	42954354	42954454	433103	0	-	0.49	(0.476,0.515]	chr1	52504	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	SLC2A1	ENSG00000117394.24	ENST00000426263.10:ENST00000630287.2:ENST00000675112.1:ENST00000674765.1:ENST00000625233.2:ENST00000372500.4:ENST00000415851.6:ENST00000630821.1:ENST00000460369.3:ENST00000676097.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	54	2	2.10874	3.777635	5.44653	0.0285608	2.03754e-4	0.12666	0.0124395
chr17	57473888	57473988	6634935	0	+	0.41	(0.408,0.44]	chr17	648057	288	INTRON	INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000674961.1:ENST00000582453.5:ENST00000675656.1:ENST00000322684.7:ENST00000442934.6:ENST00000579180.2:ENST00000579205.5:ENST00000579505.5:ENST00000582772.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	46	2	3.33067	3.77757	4.22447	0.0161655	0.0024459	0.109464	0.0445752
chr11	242053	242152	4718087	0	+	0.40404	(0.378,0.408]	chr11	435646	26	INTRON	INTRON	PSMD13	ENSG00000185627.19	ENST00000529372.5:ENST00000532097.6:ENST00000431206.6:ENST00000534590.5:ENST00000528906.5:ENST00000525665.5:ENST00000527047.5:ENST00000352303.9:ENST00000382671.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	39	2	3.05393	3.7772449999999997	4.50056	0.015974	0.00551532	0.101453	0.0672816
chr1	35980636	35980735	71646	0	+	0.373737	(0.35,0.378]	chr1	9158	68	INTRON	INTRON	AGO3	ENSG00000126070.20	ENST00000324350.9:ENST00000397828.3:ENST00000634486.1:ENST00000373191.9:ENST00000246314.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	70	2	1.95579	3.7771299999999997	5.59847	0.0234538	1.39739e-4	0.11867	0.0101825
chr1	54047738	54047829	461539	0	-	0.472527	(0.44,0.476]	chr1	55612	5	UTR5	UTR5:EXON_MRNA:SS3_PROX:INTRON	TMEM59	ENSG00000116209.12	ENST00000234831.10:ENST00000371348.5:ENST00000371341.5:ENST00000440019.5:ENST00000420738.5:ENST00000452421.5:ENST00000371337.3	protein_coding	protein_coding	protein_coding	protein_coding	6	85	2	1.89689	3.77711	5.65733	0.00630125	2.3957e-4	0.0722266	0.0142132
chr18	1407158	1407244	6942264	0	-	0.523256	(0.515,0.57]	chr18	686630	3	EXON_LNCRNA	EXON_LNCRNA:INTRON	LINC00470	ENSG00000132204.14	ENST00000657423.1:ENST00000669242.1:ENST00000660475.1:ENST00000653775.1:ENST00000412816.7:ENST00000667416.1:ENST00000661852.1:ENST00000661646.1:ENST00000667776.1:ENST00000654559.1:ENST00000661233.1:ENST00000653213.1:ENST00000669153.1:ENST00000657121.1:ENST00000655957.1:ENST00000659289.1:ENST00000666542.1:ENST00000669312.1:ENST00000581430.5:ENST00000658090.1:ENST00000667225.1:ENST00000582570.1	lncRNA	lncRNA	lncRNA	lncRNA	4	117	2	3.22994	3.777055	4.32417	5.65367e-5	7.95528e-6	0.00655354	0.0020223
chr20	50087044	50087144	7353692	0	-	0.49	(0.476,0.515]	chr20	749863	24	INTRON	INTRON	UBE2V1	ENSG00000244687.13	ENST00000340309.7:ENST00000371677.7:ENST00000415862.6:ENST00000557021.5:ENST00000617119.4:ENST00000625172.3:ENST00000396059.7:ENST00000371674.8:ENST00000371657.9:ENST00000483534.5:ENST00000492371.6:ENST00000486653.5:ENST00000490555.1:ENST00000493090.5:ENST00000467839.5:ENST00000472923.5:ENST00000432266.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	112	2	3.03027	3.777055	4.52384	9.53446e-4	3.3232e-6	0.0282335	0.00118585
chr19	18990887	18990986	7153373	0	-	0.313131	(0.28,0.32]	chr19	723004	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	SUGP2	ENSG00000064607.17	ENST00000593795.5:ENST00000594773.5:ENST00000337018.10:ENST00000452918.7:ENST00000330854.15:ENST00000597163.5:ENST00000597095.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	90	2	1.84658	3.7769850000000003	5.70739	0.0128582	8.32651e-4	0.0990564	0.0266389
chr16	88775819	88775919	6540128	0	-	0.51	(0.476,0.515]	chr16	633998	260	INTRON	INTRON	PIEZO1	ENSG00000103335.22	ENST00000301015.14	protein_coding	protein_coding	protein_coding	protein_coding	1	40	2	2.56033	3.7768750000000004	4.99342	0.0287634	0.00139274	0.127066	0.0341261
chr20	41606514	41606614	7344426	0	-	0.51	(0.476,0.515]	chr20	748566	420	INTRON	INTRON	CHD6	ENSG00000124177.16	ENST00000373233.8:ENST00000373222.3:ENST00000482596.1:ENST00000440647.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	40	2	2.56033	3.7768750000000004	4.99342	0.0287634	0.00139274	0.127066	0.0341261
chr5	171929001	171929101	2771962	0	-	0.51	(0.476,0.515]	chr5	260947	142	INTRON	INTRON	FBXW11	ENSG00000072803.18	ENST00000296933.10:ENST00000517395.6:ENST00000265094.9:ENST00000393802.6:ENST00000523843.5:ENST00000519693.5:ENST00000520376.1:ENST00000518752.1:ENST00000522507.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	40	2	2.56033	3.7768750000000004	4.99342	0.0287634	0.00139274	0.127066	0.0341261
chr7	105078645	105078745	3375285	0	+	0.39	(0.378,0.408]	chr7	315936	4	SS3_PROX	SS3_PROX:INTRON	KMT2E	ENSG00000005483.22	ENST00000257745.9:ENST00000334884.9:ENST00000311117.8:ENST00000478990.5:ENST00000476671.5:ENST00000667857.1:ENST00000482560.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	219	2	3.65327	3.7767999999999997	3.90033	5.02926e-5	1.3265000000000001e-07	0.0061299	1.64866e-4
chr11	47545114	47545214	4950323	0	-	0.48	(0.476,0.515]	chr11	464246	205	INTRON	INTRON	CELF1	ENSG00000149187.19	ENST00000310513.10:ENST00000687097.1:ENST00000531165.5:ENST00000530151.5:ENST00000525841.5:ENST00000526419.1	protein_coding	protein_coding	protein_coding	protein_coding	1	40	2	2.69967	3.7767299999999997	4.85379	0.0195838	0.00234214	0.109483	0.0442989
chr3	48184152	48184244	1687792	0	-	0.48913	(0.476,0.515]	chr3	172348	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CDC25A	ENSG00000164045.12	ENST00000302506.8:ENST00000351231.7:ENST00000443342.5:ENST00000437972.1	protein_coding	protein_coding	protein_coding	protein_coding	1	40	2	2.69967	3.7767299999999997	4.85379	0.0195838	0.00234214	0.109483	0.0442989
chr15	63702089	63702189	6199553	0	-	0.38	(0.378,0.408]	chr15	591300	27	INTRON	INTRON	HERC1	ENSG00000103657.14	ENST00000443617.7:ENST00000561400.1	protein_coding	protein_coding	protein_coding	protein_coding	1	39	2	2.54849	3.7765400000000002	5.00459	0.0273196	0.00371142	0.136494	0.0535094
chr20	50149113	50149213	7354311	0	-	0.4	(0.378,0.408]	chr20	749942	51	INTRON	INTRON	PEDS1	ENSG00000240849.11	ENST00000371652.9:ENST00000371650.9:ENST00000453505.6:ENST00000371658.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	39	2	2.54849	3.7765400000000002	5.00459	0.0273196	0.00371142	0.136494	0.0535094
chr17	1368320	1368418	6699289	0	-	0.377551	(0.35,0.378]	chr17	655546	29	INTRON	INTRON	YWHAE	ENSG00000108953.17	ENST00000264335.13:ENST00000571732.5:ENST00000573026.1:ENST00000573196.5:ENST00000575977.1:ENST00000469398.5:ENST00000486241.1:ENST00000489287.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	53	2	2.39583	3.77653	5.15723	0.0107976	0.00272706	0.0920575	0.0467523
chr9	124746538	124746638	4348968	0	-	0.35	(0.32,0.35]	chr9	399261	128	INTRON	INTRON	NR6A1	ENSG00000148200.17	ENST00000487099.7:ENST00000373584.7:ENST00000416460.6:ENST00000344523.8	protein_coding	protein_coding	protein_coding	protein_coding	3	130	2	3.31207	3.776205	4.24034	3.78985e-4	2.76513e-5	0.0180834	0.00415129
chr16	70553055	70553154	6385447	0	+	0.373737	(0.35,0.378]	chr16	613937	20	INTRON	INTRON	SF3B3	ENSG00000189091.13	ENST00000302516.10:ENST00000567635.5:ENST00000567250.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	58	2	2.23651	3.776035	5.31556	0.020879	4.97087e-4	0.111766	0.0201536
chr9	92222319	92222419	4286584	0	-	0.24	[0,0.28]	chr9	394088	4	SS5_PROX	SS5_PROX:INTRON	IARS1	ENSG00000196305.19	ENST00000375643.7:ENST00000443024.7:ENST00000447699.7:ENST00000683537.1:ENST00000684726.1:ENST00000683192.1:ENST00000683565.1:ENST00000682756.1:ENST00000684542.1:ENST00000683793.1:ENST00000683817.1:ENST00000682141.1:ENST00000682893.1:ENST00000684557.1:ENST00000498025.2:ENST00000682156.1:ENST00000683017.1:ENST00000682521.1:ENST00000627121.3:ENST00000683469.1:ENST00000683495.1:ENST00000682578.1:ENST00000682533.1:ENST00000472894.2:ENST00000684757.1:ENST00000684445.1:ENST00000683376.1:ENST00000683679.1:ENST00000683119.1:ENST00000684594.1:ENST00000684267.1:ENST00000683477.1:ENST00000684232.1:ENST00000684101.1:ENST00000682714.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	85	2	1.62991	3.775905	5.9219	0.0671202	1.62133e-4	0.183051	0.0109774
chr4	169574530	169574630	2296771	0	-	0.5	(0.476,0.515]	chr4	222229	108	INTRON	INTRON	NEK1	ENSG00000137601.18	ENST00000687054.1:ENST00000507142.6:ENST00000686697.1:ENST00000688934.1:ENST00000685111.1:ENST00000687528.1:ENST00000687643.1:ENST00000685677.1:ENST00000439128.6:ENST00000511633.5:ENST00000510533.5:ENST00000512193.5:ENST00000693604.1:ENST00000692450.1:ENST00000687219.1:ENST00000693085.1:ENST00000509912.5:ENST00000690631.1:ENST00000688487.1:ENST00000688653.1:ENST00000692868.1:ENST00000692218.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	65	2	2.05714	3.77574	5.49434	0.0156961	1.62782e-4	0.101453	0.0109774
chr7	119556494	119556594	3626901	0	-	0.34	(0.32,0.35]	chr7	337315	560	INTRON	INTRON	LINC02476	ENSG00000225546.6	ENST00000660268.1	lncRNA	lncRNA	lncRNA	lncRNA	1	44	2	2.21917	3.775675	5.33218	0.0641245	0.00204346	0.199279	0.04086
chr15	28153628	28153728	6122302	0	-	0.39	(0.378,0.408]	chr15	583064	4	INTRON	INTRON	HERC2	ENSG00000128731.18	ENST00000261609.13:ENST00000650509.1:ENST00000569772.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	138	2	3.39651	3.77567	4.15483	6.54278e-5	1.95261e-5	0.00715707	0.00339939
chr10	3776585	3776683	4543110	0	-	0.183673	[0,0.28]	chr10	419496	7	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	KLF6	ENSG00000067082.15	ENST00000497571.6:ENST00000461124.1:ENST00000542957.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	48	2	3.00498	3.7755400000000003	4.5461	0.0365918	0.00876063	0.138959	0.0846118
chr17	19063443	19063542	6740849	0	-	0.525253	(0.515,0.57]	chr17	661756	2	EXON_SMALL	EXON_SMALL	SNORD3B-2	ENSG00000262074.7	ENST00000571722.3	snoRNA	snoRNA	snoRNA	snoRNA	4	153	2	3.42644	3.775435	4.12443	0.00106731	1.31466e-7	0.0300133	1.72422e-4
chr10	125100187	125100286	4713732	0	-	0.383838	(0.378,0.408]	chr10	434903	115	INTRON	INTRON	CTBP2	ENSG00000175029.17	ENST00000337195.9:ENST00000411419.6:ENST00000494626.6:ENST00000531469.5:ENST00000460976.5:ENST00000476817.1:ENST00000530884.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	62	2	1.99678	3.7753300000000003	5.55388	0.0177959	5.01023e-4	0.113452	0.0206993
chr3	49966897	49966997	1423224	0	+	0.37	(0.35,0.378]	chr3	149964	3	SS3_PROX	SS3_PROX:INTRON	RBM6	ENSG00000004534.15	ENST00000442092.5:ENST00000443081.5:ENST00000419610.5:ENST00000441115.5:ENST00000422955.5:ENST00000454079.5:ENST00000266022.9:ENST00000425608.5:ENST00000434592.5:ENST00000433811.1:ENST00000491874.5:ENST00000488807.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	246	2	3.38673	3.775225	4.16372	3.26797e-6	2.40627e-6	0.00128387	9.83942e-4
chr22	32479475	32479575	7507766	0	+	0.54	(0.515,0.57]	chr22	766227	2	SS5_PROX	SS5_PROX:INTRON	FBXO7	ENSG00000100225.18	ENST00000420700.5:ENST00000425028.5:ENST00000266087.12:ENST00000492535.1:ENST00000452138.3:ENST00000397426.5:ENST00000444207.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	46	2	2.32836	3.774885	5.22141	0.0126662	6.44141e-4	0.0982897	0.0231685
chr5	98912276	98912376	2683907	0	-	0.24	[0,0.28]	chr5	253957	68	INTRON	INTRON	CHD1	ENSG00000153922.11	ENST00000614616.5:ENST00000284049.7	protein_coding	protein_coding	protein_coding	protein_coding	2	63	2	2.20073	3.7748150000000003	5.3489	0.0235708	0.00514751	0.128907	0.062965
chr7	128955785	128955885	3635568	0	-	0.37	(0.35,0.378]	chr7	338014	4	SS3_PROX	SS3_PROX:INTRON	TNPO3	ENSG00000064419.14	ENST00000627585.2:ENST00000265388.10:ENST00000471234.5:ENST00000482320.5	protein_coding	protein_coding	protein_coding	protein_coding	1	43	2	2.39939	3.774775	5.15016	0.0458078	9.78549e-4	0.149888	0.0287765
chrX	24174698	24174793	7631256	0	+	0.378947	(0.378,0.408]	chrX	781544	6	INTRON	INTRON	ZFX	ENSG00000005889.16	ENST00000428571.5:ENST00000539115.5:ENST00000379188.7:ENST00000304543.10:ENST00000419690.5:ENST00000379177.5:ENST00000459724.1:ENST00000338565.3:ENST00000474385.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	63	2	2.42827	3.774775	5.12128	0.00336942	0.00251746	0.0532965	0.0446195
chr11	61402836	61402934	4956771	0	-	0.316327	(0.28,0.32]	chr11	465837	3	UTR3	UTR3:EXON_MRNA	CPSF7	ENSG00000149532.16	ENST00000340437.8:ENST00000394888.8:ENST00000439958.8	protein_coding	protein_coding	protein_coding	protein_coding	4	89	2	1.64082	3.7747249999999997	5.90863	0.0422774	7.60626e-5	0.148082	0.00731806
chr6	31753957	31754040	2843634	0	+	0.566265	(0.515,0.57]	chr6	267816	5	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	MSH5:MSH5-SAPCD1	ENSG00000204410.16:ENSG00000255152.8	ENST00000375755.8:ENST00000375750.9:ENST00000650702.1:ENST00000493662.6:ENST00000375703.7:ENST00000375740.7:ENST00000423982.6:ENST00000463144.5:ENST00000450148.5:ENST00000497269.5:ENST00000468602.5:ENST00000468136.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	65	2	2.38494	3.774535	5.16413	0.00164178	8.14815e-4	0.0373835	0.0263656
chr22	40200231	40200331	7518407	0	+	0.2	[0,0.28]	chr22	768108	217	INTRON	INTRON	TNRC6B	ENSG00000100354.21	ENST00000301923.13:ENST00000402203.5:ENST00000454349.7:ENST00000489500.1:ENST00000335727.13	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	47	2	2.8569	3.774405	4.69191	0.0269474	0.013822	0.123442	0.10247
chr3	142131051	142131151	1835267	0	-	0.25	[0,0.28]	chr3	184376	48	INTRON	INTRON	TFDP2	ENSG00000114126.18	ENST00000489671.6:ENST00000467072.5:ENST00000464782.5:ENST00000475734.5:ENST00000494358.5:ENST00000495095.6:ENST00000476617.5:ENST00000491667.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	47	2	2.8569	3.774405	4.69191	0.0269474	0.013822	0.123442	0.10247
chr10	5718250	5718344	4384683	0	+	0.351064	(0.35,0.378]	chr10	404495	1	INTRON	INTRON	TASOR2	ENSG00000108021.21	ENST00000695832.1:ENST00000328090.9:ENST00000695737.1:ENST00000695833.1:ENST00000695834.1:ENST00000695835.1:ENST00000695836.1:ENST00000496681.5:ENST00000480839.6:ENST00000645567.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	43	2	2.72497	3.77437	4.82377	0.0198266	0.00325499	0.109608	0.0524329
chrX	150751838	150751937	7734847	0	+	0.363636	(0.35,0.378]	chrX	791394	2	INTRON	INTRON	MTMR1	ENSG00000063601.17	ENST00000485376.5:ENST00000370390.7:ENST00000445323.7:ENST00000488357.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	43	2	2.72497	3.77437	4.82377	0.0198266	0.00325499	0.109608	0.0524329
chr10	22685531	22685631	4580212	0	-	0.45	(0.44,0.476]	chr10	422040	233	INTRON	INTRON	PIP4K2A	ENSG00000150867.14	ENST00000376573.9:ENST00000545335.5:ENST00000605011.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	40	2	3.3111	3.774325	4.23755	0.0263357	0.0020006	0.122221	0.0412555
chr13	39036601	39036697	5576197	0	-	0.40625	(0.378,0.408]	chr13	533093	21	INTRON	INTRON	PROSER1	ENSG00000120685.20	ENST00000352251.8:ENST00000625998.2:ENST00000418503.1:ENST00000602534.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	63	2	1.8374	3.7742549999999997	5.71111	0.0299228	2.59738e-4	0.142135	0.0148796
chr1	246054868	246054968	676180	0	-	0.53	(0.515,0.57]	chr1	79717	14	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000391836.3:ENST00000464398.1:ENST00000453676.5:ENST00000462422.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	38	2	2.23915	3.7741800000000003	5.30921	0.0596178	1.98811e-4	0.16883600000000001	0.0122787
chr2	167829425	167829525	1258094	0	-	0.42	(0.408,0.44]	chr2	133322	138	INTRON	INTRON	B3GALT1-AS1	ENSG00000235335.3	ENST00000430546.2:ENST00000657553.1:ENST00000670221.1:ENST00000436982.2	lncRNA	lncRNA	lncRNA	lncRNA	8	97	2	1.34899	3.7741249999999997	6.19926	0.0342016	1.98542e-5	0.146891	0.00360253
chr12	102128938	102129038	5204947	0	+	0.28	[0,0.28]	chr12	492808	45	INTRON	INTRON	PARPBP	ENSG00000185480.12	ENST00000327680.7:ENST00000541394.5:ENST00000543784.5:ENST00000392909.7:ENST00000537257.5:ENST00000392911.6:ENST00000541668.5:ENST00000392914.3:ENST00000457614.6:ENST00000417507.6:ENST00000412715.3:ENST00000535811.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	47	2	2.43761	3.7739700000000003	5.11033	0.0423864	0.00991388	0.161744	0.0838372
chr1	67043123	67043221	477278	0	-	0.44898	(0.44,0.476]	chr1	57425	4	INTRON	INTRON	SLC35D1	ENSG00000116704.8	ENST00000235345.6	protein_coding	protein_coding	protein_coding	protein_coding	2	51	2	2.64669	3.773345	4.9	0.00423315	0.0040295	0.0578376	0.0572185
chr10	133400833	133400930	4540283	0	+	0.463918	(0.44,0.476]	chr10	419084	8	INTRON	INTRON	MTG1	ENSG00000148824.19	ENST00000477902.6:ENST00000317502.11:ENST00000432508.3:ENST00000460848.5:ENST00000495014.5:ENST00000473735.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	51	2	2.64669	3.773345	4.9	0.00423315	0.0040295	0.0578376	0.0572185
chr16	87764765	87764865	6538673	0	-	0.46	(0.44,0.476]	chr16	633582	3	SS5_PROX	SS5_PROX:INTRON	KLHDC4	ENSG00000104731.14	ENST00000567298.5:ENST00000270583.10:ENST00000347925.9:ENST00000353170.9:ENST00000562155.5:ENST00000622456.4:ENST00000562261.1:ENST00000564484.5:ENST00000569747.5:ENST00000564396.5:ENST00000568502.1:ENST00000561825.1:ENST00000568338.1:ENST00000563845.5:ENST00000566561.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	51	2	2.64669	3.773345	4.9	0.00423315	0.0040295	0.0578376	0.0572185
chr8	38175615	38175715	3936172	0	-	0.31	(0.28,0.32]	chr8	360643	4	SS5_PROX	SS5_PROX:INTRON	LSM1	ENSG00000175324.10	ENST00000520755.5:ENST00000311351.9:ENST00000522515.5:ENST00000520286.5:ENST00000523511.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	70	2	1.98806	3.773255	5.55845	0.0199553	0.00141854	0.120668	0.0340865
chr10	123155212	123155298	4533163	0	+	0.465116	(0.44,0.476]	chr10	418412	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	BUB3	ENSG00000154473.18	ENST00000368865.9:ENST00000368859.6:ENST00000368858.9:ENST00000407911.2	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	3.02366	3.77318	4.5227	0.0128818	0.00603307	0.0926667	0.0700813
chr16	21841111	21841211	6461634	0	-	0.46	(0.44,0.476]	chr16	623407	1	SS3_PROX	SS3_PROX:INTRON	NPIPB4	ENSG00000185864.18	ENST00000415645.6:ENST00000682606.1:ENST00000165086.8:ENST00000542133.5:ENST00000543660.1:ENST00000541329.1:ENST00000614197.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	38	2	3.02366	3.77318	4.5227	0.0128818	0.00603307	0.0926667	0.0700813
chr17	46105586	46105686	6783990	0	-	0.46	(0.44,0.476]	chr17	669208	105	INTRON	INTRON	KANSL1	ENSG00000120071.15	ENST00000574590.6:ENST00000572904.6:ENST00000432791.7:ENST00000575318.6:ENST00000638275.1:ENST00000262419.10:ENST00000648792.1:ENST00000639531.1:ENST00000639150.1:ENST00000639853.1:ENST00000571698.2:ENST00000639375.1:ENST00000577114.2:ENST00000638269.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	38	2	3.02366	3.77318	4.5227	0.0128818	0.00603307	0.0926667	0.0700813
chr18	21576970	21577069	6954875	0	-	0.454545	(0.44,0.476]	chr18	688022	8	INTRON	INTRON	ESCO1	ENSG00000141446.11	ENST00000269214.10:ENST00000383276.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	38	2	3.02366	3.77318	4.5227	0.0128818	0.00603307	0.0926667	0.0700813
chr19	6257738	6257837	7128204	0	-	0.474747	(0.44,0.476]	chr19	717607	267	INTRON	INTRON	MLLT1	ENSG00000130382.9	ENST00000252674.9	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	3.02366	3.77318	4.5227	0.0128818	0.00603307	0.0926667	0.0700813
chr4	6789535	6789635	1921656	0	+	0.47	(0.44,0.476]	chr4	192985	63	INTRON	INTRON	KIAA0232	ENSG00000170871.12	ENST00000503278.1:ENST00000508423.1:ENST00000307659.6:ENST00000425103.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	38	2	3.02366	3.77318	4.5227	0.0128818	0.00603307	0.0926667	0.0700813
chr8	9014829	9014928	3695681	0	+	0.464646	(0.44,0.476]	chr8	342919	27	INTRON	INTRON	ERI1	ENSG00000104626.15	ENST00000519292.5:ENST00000250263.8:ENST00000520684.5:ENST00000520332.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	38	2	3.02366	3.77318	4.5227	0.0128818	0.00603307	0.0926667	0.0700813
chr3	73003344	73003444	1452019	0	+	0.52	(0.515,0.57]	chr3	152951	48	INTRON	INTRON	PPP4R2	ENSG00000163605.15	ENST00000482242.5:ENST00000356692.10:ENST00000470976.1:ENST00000488810.5:ENST00000495566.1:ENST00000476505.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	38	2	3.1473	3.7731500000000002	4.399	0.00708863	0.00397184	0.0754923	0.0549214
chr1	167226245	167226344	244902	0	+	0.323232	(0.32,0.35]	chr1	29245	49	INTRON	INTRON	POU2F1	ENSG00000143190.23	ENST00000559038.5:ENST00000367866.7:ENST00000557909.5:ENST00000271411.8:ENST00000429375.6:ENST00000560232.6:ENST00000442313.5:ENST00000367865.5:ENST00000492850.5:ENST00000541643.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	56	2	2.07985	3.773135	5.46642	0.0303092	0.00127669	0.143025	0.0326395
chr16	89443307	89443407	6543129	0	-	0.44	(0.408,0.44]	chr16	634281	116	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	41	2	2.36073	3.773045	5.18536	0.0481658	6.17381e-4	0.153019	0.0223951
chr1	35609908	35610007	421999	0	-	0.323232	(0.32,0.35]	chr1	50860	1	INTRON	INTRON	PSMB2	ENSG00000126067.12	ENST00000373237.4:ENST00000621781.4:ENST00000630477.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	41	2	2.78073	3.77287	4.76501	0.01481	0.0114287	0.106702	0.0886611
chr17	82910387	82910483	6695829	0	+	0.322917	(0.32,0.35]	chr17	655020	7	INTRON	INTRON	TBCD	ENSG00000141556.22	ENST00000682479.1:ENST00000682722.1:ENST00000684464.1:ENST00000684544.1:ENST00000681983.1:ENST00000684361.1:ENST00000683184.1:ENST00000683282.1:ENST00000684408.1:ENST00000355528.9:ENST00000683444.1:ENST00000684776.1:ENST00000683041.1:ENST00000684760.1:ENST00000684349.1:ENST00000682213.1:ENST00000539345.6:ENST00000684000.1:ENST00000684188.1:ENST00000684429.1:ENST00000682610.1:ENST00000683821.1:ENST00000682654.1:ENST00000576160.6:ENST00000571712.5:ENST00000576996.5:ENST00000574801.5:ENST00000683584.1:ENST00000682099.1:ENST00000684559.1:ENST00000571316.5:ENST00000576760.5:ENST00000572984.5:ENST00000683839.1:ENST00000574975.5:ENST00000572953.5:ENST00000571796.5:ENST00000682315.1:ENST00000574422.1:ENST00000576677.6:ENST00000571618.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	41	2	2.78073	3.77287	4.76501	0.01481	0.0114287	0.106702	0.0886611
chr20	31785409	31785508	7254134	0	+	0.333333	(0.32,0.35]	chr20	736799	11	INTRON	INTRON	TPX2	ENSG00000088325.16	ENST00000340513.4:ENST00000300403.11	protein_coding	protein_coding	protein_coding	protein_coding	1	41	2	2.78073	3.77287	4.76501	0.01481	0.0114287	0.106702	0.0886611
chr1	185053287	185053387	275636	0	+	0.34	(0.32,0.35]	chr1	32263	66	INTRON	INTRON	RNF2	ENSG00000121481.11	ENST00000367509.8:ENST00000498201.1:ENST00000367510.8:ENST00000453650.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	41	2	2.71269	3.77278	4.83287	0.0181461	0.0095071	0.114853	0.0817766
chr1	61122917	61123017	127799	0	+	0.46	(0.44,0.476]	chr1	14775	107	EXON_MRNA	EXON_MRNA:INTRON	NFIA	ENSG00000162599.17	ENST00000371191.5:ENST00000664495.1:ENST00000476646.5:ENST00000407417.7:ENST00000479364.1:ENST00000371189.8:ENST00000670151.1:ENST00000664149.1:ENST00000662015.1:ENST00000403491.8:ENST00000371187.7:ENST00000485903.6:ENST00000371185.6:ENST00000371184.6:ENST00000603233.2:ENST00000496712.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	38	2	2.58033	3.77262	4.96491	0.0247511	0.0034249	0.131869	0.0517761
chr12	123361209	123361308	5445172	0	-	0.474747	(0.44,0.476]	chr12	521118	104	INTRON	INTRON	SBNO1	ENSG00000139697.14	ENST00000602398.3:ENST00000267176.8	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	2.58033	3.77262	4.96491	0.0247511	0.0034249	0.131869	0.0517761
chr3	136915688	136915788	1512973	0	+	0.46	(0.44,0.476]	chr3	158199	260	INTRON	INTRON	NCK1	ENSG00000158092.7	ENST00000481752.6:ENST00000288986.6:ENST00000491539.5:ENST00000485096.5:ENST00000476286.1:ENST00000478862.1:ENST00000460960.1:ENST00000488930.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	38	2	2.58033	3.77262	4.96491	0.0247511	0.0034249	0.131869	0.0517761
chr3	143018571	143018670	1529251	0	+	0.414141	(0.408,0.44]	chr3	159357	12	INTRON	INTRON	U2SURP	ENSG00000163714.18	ENST00000488497.7:ENST00000473835.7:ENST00000461591.5:ENST00000493598.6:ENST00000463563.6:ENST00000470400.5:ENST00000488587.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	53	2	2.86612	3.7725299999999997	4.67894	0.0087648	0.00157924	0.0788605	0.0366789
chr22	21929949	21930049	7561496	0	-	0.35	(0.32,0.35]	chr22	773408	39	INTRON	INTRON	PPM1F	ENSG00000100034.14	ENST00000263212.10:ENST00000407142.5:ENST00000397495.8:ENST00000484588.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	73	2	1.81388	3.77236	5.73084	0.0371014	1.07676e-4	0.139201	0.00878438
chr1	214625563	214625663	313766	0	+	0.27	[0,0.28]	chr1	36104	29	INTRON	INTRON	CENPF	ENSG00000117724.14	ENST00000366955.8	protein_coding	protein_coding	protein_coding	protein_coding	2	70	2	1.89998	3.77231	5.64464	0.0599553	5.16173e-4	0.169548	0.0203753
chr3	100300505	100300602	1465975	0	+	0.453608	(0.44,0.476]	chr3	153645	8	INTRON	INTRON	TBC1D23	ENSG00000036054.13	ENST00000394144.9:ENST00000344949.9:ENST00000486274.5:ENST00000475134.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	132	2	3.24991	3.772185	4.29446	4.57551e-5	2.62765e-5	0.00551647	0.0042413
chr7	139304736	139304836	3437339	0	+	0.33	(0.32,0.35]	chr7	320285	70	UTR3	UTR3:EXON_MRNA	UBN2	ENSG00000157741.15	ENST00000473989.8	protein_coding	protein_coding	protein_coding	protein_coding	3	128	2	3.59372	3.772175	3.95063	2.44309e-4	4.81573e-5	0.0144094	0.00566695
chr18	12361623	12361721	6946984	0	-	0.397959	(0.378,0.408]	chr18	687242	12	INTRON	INTRON	AFG3L2	ENSG00000141385.12	ENST00000269143.8:ENST00000691970.1:ENST00000691179.1:ENST00000687337.1:ENST00000692988.1:ENST00000692497.1:ENST00000688199.1:ENST00000590811.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	71	2	2.12071	3.772145	5.42358	0.00601933	8.39231e-4	0.0700813	0.0266487
chr5	456291	456388	2313200	0	+	0.319588	(0.28,0.32]	chr5	223771	19	INTRON	INTRON	EXOC3	ENSG00000180104.16	ENST00000512944.6:ENST00000515601.6:ENST00000315013.9:ENST00000503889.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	64	2	2.00989	3.771955	5.53402	0.0427801	4.0843e-4	0.148082	0.0181306
chr2	10664337	10664436	1066148	0	-	0.484848	(0.476,0.515]	chr2	113760	9	INTRON	INTRON	NOL10	ENSG00000115761.17	ENST00000695464.1:ENST00000695470.1:ENST00000695467.1:ENST00000695468.1:ENST00000695469.1:ENST00000381685.10:ENST00000695471.1:ENST00000345985.7:ENST00000538384.5:ENST00000695472.1:ENST00000695473.1:ENST00000695475.1:ENST00000695476.1:ENST00000695477.1:ENST00000695478.1:ENST00000695479.1:ENST00000431319.2:ENST00000695480.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	40	2	2.48527	3.77187	5.05847	0.03496	0.00108081	0.13747500000000001	0.0300133
chr21	43871645	43871745	7413854	0	+	0.39	(0.378,0.408]	chr21	755688	39	INTRON	INTRON	AGPAT3	ENSG00000160216.21	ENST00000291572.13:ENST00000448287.5	protein_coding	protein_coding	protein_coding	protein_coding	4	71	2	1.76	3.771865	5.78373	0.023484	1.89312e-4	0.128531	0.012565
chr1	66968422	66968521	139885	0	+	0.323232	(0.32,0.35]	chr1	15688	49	INTRON	INTRON	MIER1	ENSG00000198160.15	ENST00000355977.10:ENST00000371018.7:ENST00000357692.6:ENST00000371016.5:ENST00000371014.5:ENST00000401041.6:ENST00000355356.3:ENST00000401042.7	protein_coding	protein_coding	protein_coding	protein_coding	2	57	2	2.71053	3.7717	4.83287	0.0095071	0.00346747	0.0817766	0.0539802
chr16	14914969	14915067	6304699	0	+	0.510204	(0.476,0.515]	chr16	603076	27	INTRON	INTRON	PKD1P3	ENSG00000183458.14	ENST00000534164.6	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	1	40	2	2.7646	3.77158	4.77856	0.0162075	0.00305743	0.101453	0.0509893
chr17	45043194	45043294	6782023	0	-	0.49	(0.476,0.515]	chr17	669007	78	INTRON	INTRON	DCAKD	ENSG00000172992.13	ENST00000342350.10:ENST00000452796.7:ENST00000651974.1:ENST00000310604.9:ENST00000688601.1:ENST00000614054.5:ENST00000687739.1:ENST00000688897.1:ENST00000687955.1:ENST00000688577.1:ENST00000588499.6:ENST00000684999.1:ENST00000692180.1:ENST00000693065.1:ENST00000691739.1:ENST00000687525.1:ENST00000686754.1:ENST00000687463.1:ENST00000685712.1:ENST00000592902.6:ENST00000685986.1:ENST00000692907.1:ENST00000689764.1:ENST00000687414.1:ENST00000693328.1:ENST00000688568.1:ENST00000588295.2:ENST00000593094.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	40	2	2.7646	3.77158	4.77856	0.0162075	0.00305743	0.101453	0.0509893
chr2	134939562	134939660	872448	0	+	0.479592	(0.476,0.515]	chr2	97676	1	INTRON	INTRON	CCNT2	ENSG00000082258.13	ENST00000419781.5:ENST00000446247.5:ENST00000264157.10:ENST00000452839.5:ENST00000295238.10:ENST00000475094.1:ENST00000417175.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	40	2	2.7646	3.77158	4.77856	0.0162075	0.00305743	0.101453	0.0509893
chr6	7129762	7129862	2798583	0	+	0.49	(0.476,0.515]	chr6	263723	207	INTRON	INTRON	RREB1	ENSG00000124782.21	ENST00000379933.7:ENST00000491191.5:ENST00000471433.5:ENST00000379938.7:ENST00000467782.5:ENST00000349384.10:ENST00000334984.10:ENST00000475946.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	40	2	2.7646	3.77158	4.77856	0.0162075	0.00305743	0.101453	0.0509893
chr6	17696898	17696998	3066114	0	-	0.5	(0.476,0.515]	chr6	284872	79	INTRON	INTRON	NUP153	ENSG00000124789.12	ENST00000613258.4:ENST00000537253.5:ENST00000262077.3	protein_coding	protein_coding	protein_coding	protein_coding	1	40	2	2.7646	3.77158	4.77856	0.0162075	0.00305743	0.101453	0.0509893
chr8	130013794	130013893	4063907	0	-	0.484848	(0.476,0.515]	chr8	369848	50	INTRON	INTRON	CYRIB	ENSG00000153310.21	ENST00000694912.1:ENST00000523288.5:ENST00000519110.5:ENST00000401979.6:ENST00000523509.5:ENST00000517654.5:ENST00000518879.5:ENST00000522702.5:ENST00000521223.5:ENST00000518283.5:ENST00000523993.5:ENST00000519020.5:ENST00000518167.5:ENST00000522361.1:ENST00000523514.1:ENST00000518285.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	40	2	2.7646	3.77158	4.77856	0.0162075	0.00305743	0.101453	0.0509893
chr1	32035022	32035121	62858	0	+	0.323232	(0.32,0.35]	chr1	7957	13	INTRON	INTRON	KHDRBS1	ENSG00000121774.18	ENST00000327300.12:ENST00000307714.12:ENST00000492989.1:ENST00000484270.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	76	2	1.80487	3.77155	5.73823	0.0210603	4.5635e-4	0.122559	0.0196892
chr1	54377690	54377790	463474	0	-	0.36	(0.35,0.378]	chr1	55784	210	INTRON	INTRON	SSBP3	ENSG00000157216.16	ENST00000610401.5:ENST00000357475.9:ENST00000371319.8:ENST00000417664.7:ENST00000533946.6:ENST00000371320.8:ENST00000525990.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	64	2	2.28182	3.771535	5.26125	0.00637232	0.00191117	0.0724821	0.03947
chr10	68350391	68350490	4638571	0	-	0.383838	(0.378,0.408]	chr10	426529	38	INTRON	INTRON	RUFY2	ENSG00000204130.14	ENST00000466493.5:ENST00000484083.5:ENST00000463210.6:ENST00000602465.6:ENST00000388768.6:ENST00000265865.3:ENST00000473398.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	40	2	3.22599	3.77149	4.31699	0.0250408	0.00288652	0.12011	0.0494641
chr1	119140981	119141069	199737	0	+	0.397727	(0.378,0.408]	chr1	22165	2	SS5_PROX	SS5_PROX:INTRON	WARS2-AS1	ENSG00000231365.7	ENST00000667138.1:ENST00000425884.6:ENST00000688395.1:ENST00000440150.5:ENST00000670000.1:ENST00000457043.1:ENST00000418015.1:ENST00000413531.5:ENST00000667936.1:ENST00000685192.1	lncRNA	lncRNA	lncRNA	lncRNA	1	41	2	2.26252	3.771425	5.28033	0.056222	0.00143651	0.18407	0.0340925
chr16	24039143	24039243	6325797	0	+	0.38	(0.378,0.408]	chr16	605723	32	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000498739.1:ENST00000647422.1:ENST00000486868.1:ENST00000482000.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	41	2	2.26252	3.771425	5.28033	0.056222	0.00143651	0.18407	0.0340925
chr12	112082525	112082624	5415160	0	-	0.272727	[0,0.28]	chr12	517230	10	INTRON	INTRON	NAA25	ENSG00000111300.10	ENST00000261745.9:ENST00000552527.5:ENST00000549711.5:ENST00000551858.1:ENST00000547133.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	97	2	1.53476	3.771415	6.00807	0.0398264	6.0063e-4	0.161534	0.0226059
chr15	63749991	63750091	6200054	0	-	0.35	(0.32,0.35]	chr15	591392	2	SS3_PROX	SS3_PROX:INTRON	HERC1	ENSG00000103657.14	ENST00000443617.7:ENST00000561400.1	protein_coding	protein_coding	protein_coding	protein_coding	6	195	2	2.91491	3.771385	4.62786	6.37977e-5	8.2522e-6	0.00660941	0.00218455
chr15	101294165	101294256	6270040	0	-	0.593407	(0.57,1]	chr15	598034	4	INTRON	INTRON	SNRPA1	ENSG00000131876.18	ENST00000254193.11:ENST00000558036.5:ENST00000559309.5:ENST00000394082.8:ENST00000540017.6:ENST00000560496.5:ENST00000560383.5:ENST00000558059.5:ENST00000560987.5:ENST00000560856.5:ENST00000558020.1:ENST00000561187.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	142	2	3.56687	3.771325	3.97578	1.01412e-7	6.18706e-8	1.43363e-4	1.07836e-4
chr17	64500934	64500986	6815814	0	-	0.326923	(0.32,0.35]	chr17	673795	2	EXON_MRNA	EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DDX5	ENSG00000108654.16	ENST00000225792.10:ENST00000678890.1:ENST00000676601.1:ENST00000676575.1:ENST00000676969.1:ENST00000678810.1:ENST00000585317.2:ENST00000678110.1:ENST00000580026.6:ENST00000678757.1:ENST00000676581.1:ENST00000676785.1:ENST00000585111.2:ENST00000577922.6:ENST00000450599.7:ENST00000678814.1:ENST00000677726.1:ENST00000583212.2:ENST00000579461.2:ENST00000540698.6:ENST00000581230.5:ENST00000581693.5:ENST00000582326.2:ENST00000578491.2:ENST00000578804.5:ENST00000578758.5:ENST00000581237.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	17	676	2	3.41447	3.771185	4.1279	1.61083e-7	2.55995e-8	1.84933e-4	5.48456e-5
chr6	47556359	47556458	2874356	0	+	0.363636	(0.35,0.378]	chr6	272749	12	INTRON	INTRON	CD2AP	ENSG00000198087.7	ENST00000359314.5	protein_coding	protein_coding	protein_coding	protein_coding	4	73	2	2.04967	3.771125	5.49258	0.00827328	8.19894e-4	0.0813266	0.0264086
chr9	125204764	125204864	4197948	0	+	0.43	(0.408,0.44]	chr9	383092	13	INTRON	INTRON	RABEPK	ENSG00000136933.17	ENST00000373538.8:ENST00000259460.12:ENST00000394125.8:ENST00000628863.2:ENST00000373544.5:ENST00000416065.1	protein_coding	protein_coding	protein_coding	protein_coding	1	43	2	3.10641	3.7711050000000004	4.4358	0.00893097	0.00555646	0.0849778	0.0648867
chr1	67043024	67043123	477277	0	-	0.50505	(0.476,0.515]	chr1	57425	3	INTRON	INTRON	SLC35D1	ENSG00000116704.8	ENST00000235345.6	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	3.01197	3.7711	4.53023	0.0119748	0.00633162	0.0899583	0.0722266
chr12	112471745	112471844	5230333	0	+	0.515152	(0.476,0.515]	chr12	495872	144	INTRON	INTRON	PTPN11	ENSG00000179295.19	ENST00000688597.1:ENST00000692624.1:ENST00000685487.1:ENST00000690210.1:ENST00000639857.2:ENST00000392597.5:ENST00000687906.1:ENST00000351677.7:ENST00000635625.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	38	2	3.01197	3.7711	4.53023	0.0119748	0.00633162	0.0899583	0.0722266
chr9	136210565	136210664	4373559	0	-	0.515152	(0.476,0.515]	chr9	402614	9	INTRON	INTRON	QSOX2	ENSG00000165661.17	ENST00000358701.10	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	3.01197	3.7711	4.53023	0.0119748	0.00633162	0.0899583	0.0722266
chr8	81713617	81713717	3979490	0	-	0.32	(0.28,0.32]	chr8	364624	3	SS5_PROX	SS5_PROX:INTRON	ZFAND1	ENSG00000104231.11	ENST00000524305.5:ENST00000220669.10:ENST00000523096.5:ENST00000522520.5:ENST00000522032.1:ENST00000519464.5:ENST00000521895.5:ENST00000521287.5:ENST00000523431.5:ENST00000520635.5:ENST00000519523.5:ENST00000517588.5:ENST00000520604.5:ENST00000523361.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	58	2	2.24061	3.77107	5.30153	0.0194267	0.00332518	0.119831	0.0512081
chr15	43392490	43392590	6011622	0	+	0.5	(0.476,0.515]	chr15	572516	58	INTRON	INTRON	TUBGCP4	ENSG00000137822.13	ENST00000564079.6:ENST00000260383.11:ENST00000561691.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	40	2	2.28264	3.771045	5.25945	0.0534132	0.00111445	0.179876	0.0306328
chr9	122372732	122372831	4194808	0	+	0.30303	(0.28,0.32]	chr9	382725	5	INTRON	INTRON	PTGS1	ENSG00000095303.17	ENST00000643810.1:ENST00000540753.6:ENST00000645132.1:ENST00000362012.7:ENST00000647067.1:ENST00000619306.5:ENST00000426608.6:ENST00000223423.8:ENST00000643576.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	43	2	2.73945	3.771	4.80255	0.017681	0.0137406	0.11319	0.0949306
chr2	101289653	101289752	1199357	0	-	0.454545	(0.44,0.476]	chr2	128169	2	INTRON	INTRON	RNF149	ENSG00000163162.9	ENST00000424632.5:ENST00000295317.4:ENST00000478404.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	52	2	2.78129	3.7709849999999996	4.76068	0.00653414	0.00229634	0.0699952	0.0439319
chr12	51005848	51005923	5324581	0	-	0.466667	(0.44,0.476]	chr12	507716	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SLC11A2	ENSG00000110911.17	ENST00000547688.7:ENST00000644495.1:ENST00000643884.1:ENST00000546636.5:ENST00000547198.5:ENST00000394904.9:ENST00000262052.9:ENST00000643123.1:ENST00000646740.1:ENST00000642227.1:ENST00000541174.6:ENST00000545993.7:ENST00000546743.5:ENST00000547510.5:ENST00000546488.5:ENST00000547579.5:ENST00000550714.5:ENST00000547732.5:ENST00000548193.5:ENST00000646988.1:ENST00000549625.1:ENST00000549193.5:ENST00000681324.1:ENST00000550995.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	39	2	3.2029	3.770945	4.33899	0.0206616	0.00308681	0.110999	0.0510391
chr7	128004447	128004546	3405950	0	+	0.444444	(0.44,0.476]	chr7	318188	65	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000486037.1:ENST00000484767.5:ENST00000470723.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	39	2	3.2029	3.770945	4.33899	0.0206616	0.00308681	0.110999	0.0510391
chr1	702340	702440	356973	0	-	0.32	(0.28,0.32]	chr1	41095	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	ENSG00000230021	ENSG00000230021.10	ENST00000419394.2:ENST00000634337.2:ENST00000635509.2:ENST00000648019.1:ENST00000440200.5:ENST00000441245.5	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	1	43	2	2.67453	3.77092	4.86731	0.021289	0.0116253	0.123318	0.0889104
chr1	243156638	243156729	667712	0	-	0.318681	(0.28,0.32]	chr1	79240	3	UTR5	UTR5:EXON_MRNA:SS3_PROX:INTRON	CEP170	ENSG00000143702.16	ENST00000366544.5:ENST00000366543.5:ENST00000366542.6:ENST00000481987.5:ENST00000336415.8:ENST00000490813.5:ENST00000413359.6:ENST00000464936.5:ENST00000492145.1	protein_coding	protein_coding	protein_coding	protein_coding	1	43	2	2.67453	3.77092	4.86731	0.021289	0.0116253	0.123318	0.0889104
chr6	12029369	12029469	2814397	0	+	0.32	(0.28,0.32]	chr6	264794	86	INTRON	INTRON	HIVEP1	ENSG00000095951.17	ENST00000491710.5:ENST00000487103.5:ENST00000379388.7:ENST00000627968.2:ENST00000541134.5:ENST00000442081.6:ENST00000478545.1:ENST00000484210.1	protein_coding	protein_coding	protein_coding	protein_coding	1	43	2	2.67453	3.77092	4.86731	0.021289	0.0116253	0.123318	0.0889104
chr1	65290381	65290480	135897	0	+	0.313131	(0.28,0.32]	chr1	15346	251	INTRON	INTRON	DNAJC6	ENSG00000116675.16	ENST00000463018.5:ENST00000494710.6:ENST00000263441.11:ENST00000395325.7:ENST00000483402.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	47	2	2.45545	3.770835	5.08622	0.0438092	0.00227525	0.14901	0.0437013
chr6	12090735	12090835	2815014	0	+	0.31	(0.28,0.32]	chr6	264806	11	INTRON	INTRON	HIVEP1	ENSG00000095951.17	ENST00000491710.5:ENST00000487103.5:ENST00000379388.7:ENST00000627968.2:ENST00000541134.5:ENST00000442081.6:ENST00000478545.1	protein_coding	protein_coding	protein_coding	protein_coding	1	47	2	2.45545	3.770835	5.08622	0.0438092	0.00227525	0.14901	0.0437013
chr1	229542969	229543067	653612	0	-	0.540816	(0.515,0.57]	chr1	77476	2	INTRON	INTRON	ABCB10	ENSG00000135776.5	ENST00000344517.5	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	3.12663	3.770805	4.41498	0.0106866	0.00374498	0.0861859	0.0562234
chr21	45428848	45428948	7419744	0	+	0.36	(0.35,0.378]	chr21	756409	230	INTRON	INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1	protein_coding	protein_coding	protein_coding	protein_coding	2	53	2	2.49643	3.770775	5.04512	0.00752974	0.00393262	0.0773151	0.0548259
chr6	99544132	99544221	3167089	0	-	0.280899	(0.28,0.32]	chr6	295471	5	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	CCNC	ENSG00000112237.13	ENST00000520429.6:ENST00000326298.8:ENST00000369220.8:ENST00000520371.5:ENST00000523961.5:ENST00000523799.5:ENST00000486428.6:ENST00000523985.5:ENST00000518714.5:ENST00000484049.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	47	2	2.51488	3.7707699999999997	5.02666	0.0380957	0.0027935	0.141678	0.0488769
chr2	36575896	36575996	1092581	0	-	0.28	[0,0.28]	chr2	117077	145	INTRON	INTRON	FEZ2	ENSG00000171055.15	ENST00000414288.5:ENST00000379245.8:ENST00000405912.8:ENST00000413938.5:ENST00000441005.5:ENST00000305852.11:ENST00000451623.5:ENST00000487282.5:ENST00000464964.1:ENST00000357996.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	63	2	2.33097	3.7707550000000003	5.21054	0.0158969	0.00758653	0.109464	0.0749063
chrX	121371153	121371253	7716178	0	+	0.25	[0,0.28]	chrX	789396	2	PRIMIRNA	PRIMIRNA	MIR3672	ENSG00000265456.1	ENST00000584290.1	miRNA	primary_miRNA	miRNA	primary_miRNA	2	63	2	2.33097	3.7707550000000003	5.21054	0.0158969	0.00758653	0.109464	0.0749063
chr2	10339274	10339374	691994	0	+	0.52	(0.515,0.57]	chr2	81133	87	INTRON	INTRON	HPCAL1	ENSG00000115756.13	ENST00000423674.5:ENST00000307845.8:ENST00000381765.7:ENST00000419810.6:ENST00000622018.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	96	2	3.33839	3.77069	4.20299	1.61956e-4	1.70677e-5	0.0116382	0.0031426
chr12	55780094	55780194	5332445	0	-	0.49	(0.476,0.515]	chr12	509126	191	INTRON	INTRON	SARNP	ENSG00000205323.9	ENST00000546604.5:ENST00000552884.5:ENST00000336133.8:ENST00000552080.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	38	2	2.56868	3.7706049999999998	4.97253	0.0256676	0.00311573	0.133676	0.0498063
chr10	74076570	74076668	4455295	0	+	0.428571	(0.408,0.44]	chr10	411422	18	EXON_LNCRNA	EXON_LNCRNA:INTRON	VCL	ENSG00000035403.18	ENST00000623461.3:ENST00000372755.7:ENST00000624354.3:ENST00000211998.10:ENST00000478896.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	38	2	3.02513	3.770585	4.51604	0.0137419	0.0059965	0.0949306	0.0700606
chr17	51095584	51095684	6796765	0	-	0.43	(0.408,0.44]	chr17	671024	155	INTRON	INTRON	SPAG9	ENSG00000008294.22	ENST00000262013.12:ENST00000505279.5:ENST00000357122.8	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	3.02513	3.770585	4.51604	0.0137419	0.0059965	0.0949306	0.0700606
chr6	44441866	44441966	2873471	0	+	0.43	(0.408,0.44]	chr6	272707	116	INTRON	INTRON	CDC5L	ENSG00000096401.8	ENST00000371477.4	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	3.02513	3.770585	4.51604	0.0137419	0.0059965	0.0949306	0.0700606
chr17	30122765	30122865	6587448	0	+	0.4	(0.378,0.408]	chr17	640557	42	INTRON	INTRON	NSRP1	ENSG00000126653.18	ENST00000540900.7:ENST00000584423.5:ENST00000612959.4:ENST00000247026.10:ENST00000577289.6:ENST00000584154.5:ENST00000394826.8:ENST00000479218.6:ENST00000475652.5:ENST00000584317.5:ENST00000583301.5:ENST00000585881.5:ENST00000467446.6:ENST00000580103.6:ENST00000581048.5:ENST00000588614.1:ENST00000589608.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	62	2	2.31181	3.770525	5.22924	0.00548372	0.00172721	0.0671431	0.0374701
chr17	30755784	30755883	6590046	0	+	0.363636	(0.35,0.378]	chr17	640860	121	INTRON	INTRON	SUZ12P1	ENSG00000264538.7	ENST00000578070.5:ENST00000579526.5:ENST00000690405.1:ENST00000497969.6:ENST00000578195.6:ENST00000582557.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	2	53	2	2.23043	3.770505	5.31058	0.0187487	0.00160599	0.117523	0.0364977
chr1	184876844	184876944	602071	0	-	0.29	(0.28,0.32]	chr1	71746	84	INTRON	INTRON	NIBAN1	ENSG00000135842.17	ENST00000367511.4	protein_coding	protein_coding	protein_coding	protein_coding	2	109	2	3.12332	3.7704050000000002	4.41749	0.00698537	1.32611e-5	0.0718189	0.00270432
chr13	50243913	50244012	5492605	0	+	0.40404	(0.378,0.408]	chr13	526057	192	INTRON	INTRON	DLEU1	ENSG00000176124.15	ENST00000467721.5:ENST00000468522.5:ENST00000490577.5:ENST00000491341.5:ENST00000491615.5:ENST00000463474.7:ENST00000468168.5:ENST00000476738.5:ENST00000461527.7:ENST00000486895.5:ENST00000485007.5:ENST00000475913.5:ENST00000484529.5:ENST00000473075.3:ENST00000483444.5	lncRNA	lncRNA	lncRNA	lncRNA	1	40	2	2.36428	3.770275	5.17627	0.0441088	0.00208234	0.162255	0.0411801
chr4	2582902	2583001	1912979	0	+	0.40404	(0.378,0.408]	chr4	191976	454	INTRON	INTRON	RNF4:FAM193A	ENSG00000063978.16:ENSG00000125386.16	ENST00000508235.1:ENST00000637812.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	40	2	2.36428	3.770275	5.17627	0.0441088	0.00208234	0.162255	0.0411801
chr7	132961224	132961324	3644675	0	-	0.39	(0.378,0.408]	chr7	338848	739	INTRON	INTRON	CHCHD3	ENSG00000106554.13	ENST00000262570.10:ENST00000448878.6:ENST00000496427.5:ENST00000423635.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	40	2	2.36428	3.770275	5.17627	0.0441088	0.00208234	0.162255	0.0411801
chr12	122208021	122208110	5439523	0	-	0.449438	(0.44,0.476]	chr12	520149	5	UTR3	UTR3:EXON_MRNA	DIABLO	ENSG00000184047.20	ENST00000443649.9:ENST00000650715.1:ENST00000464942.7:ENST00000353548.11:ENST00000644227.1:ENST00000644509.1:ENST00000342392.3:ENST00000645569.1:ENST00000267169.11:ENST00000489781.3:ENST00000540535.6:ENST00000642640.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	41	2	2.29842	3.770265	5.24211	0.0552483	4.87398e-4	0.165463	0.0199652
chr6	53329653	53329753	3107996	0	-	0.47	(0.44,0.476]	chr6	291049	336	INTRON	INTRON	ELOVL5	ENSG00000012660.14	ENST00000370918.8:ENST00000542638.5:ENST00000304434.11:ENST00000485336.5:ENST00000465983.5:ENST00000486973.1:ENST00000370913.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	41	2	2.29842	3.770265	5.24211	0.0552483	4.87398e-4	0.165463	0.0199652
chr6	20445373	20445473	2827884	0	+	0.53	(0.515,0.57]	chr6	265583	53	INTRON	INTRON	E2F3	ENSG00000112242.16	ENST00000346618.8:ENST00000535432.2	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	2.56306	3.77014	4.97722	0.0247751	0.00168681	0.131869	0.0370386
chr8	97776707	97776807	3809948	0	+	0.52	(0.515,0.57]	chr8	352908	2	INTRON	INTRON	LAPTM4B	ENSG00000104341.17	ENST00000445593.6:ENST00000619747.1:ENST00000521545.7:ENST00000517924.5	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	2.56306	3.77014	4.97722	0.0247751	0.00168681	0.131869	0.0370386
chr3	180941298	180941398	1568896	0	+	0.45	(0.44,0.476]	chr3	162382	57	INTRON	INTRON	FXR1	ENSG00000114416.18	ENST00000469882.5:ENST00000484790.5:ENST00000465551.5:ENST00000305586.11:ENST00000475315.5:ENST00000357559.9:ENST00000468861.5:ENST00000491062.5:ENST00000479176.5:ENST00000445140.6:ENST00000472339.5:ENST00000484958.5:ENST00000480918.5:ENST00000484042.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	41	2	3.41176	3.770095	4.12843	0.0337192	0.00130987	0.134145	0.0333932
chr2	241320002	241320102	1053648	0	+	0.34	(0.32,0.35]	chr2	112196	4	SS3_PROX	SS3_PROX:INTRON	SEPTIN2	ENSG00000168385.18	ENST00000391973.6:ENST00000428282.5:ENST00000492978.5:ENST00000360051.7:ENST00000407017.5:ENST00000445030.5:ENST00000428524.5:ENST00000469434.5:ENST00000616972.4:ENST00000495463.5:ENST00000482304.5:ENST00000475474.5:ENST00000401990.5:ENST00000469175.5:ENST00000407971.5:ENST00000461048.5:ENST00000457335.5:ENST00000436795.5:ENST00000494824.5:ENST00000411484.5:ENST00000462147.5:ENST00000434955.5:ENST00000466211.5:ENST00000391971.7:ENST00000402092.6:ENST00000484740.1:ENST00000473479.5:ENST00000464128.5:ENST00000441533.5:ENST00000467971.5:ENST00000425899.5:ENST00000443492.5:ENST00000437066.5:ENST00000429791.5:ENST00000420786.5:ENST00000475823.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	55	2	2.35591	3.77003	5.18415	0.0128129	0.00333629	0.0990564	0.0512081
chr1	50784803	50784903	450498	0	-	0.35	(0.32,0.35]	chr1	54249	397	INTRON	INTRON	FAF1	ENSG00000185104.21	ENST00000396153.7:ENST00000487898.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	55	2	2.30476	3.76998	5.2352	0.0151817	0.0028268	0.108535	0.0472361
chr17	32653542	32653642	6754843	0	-	0.42	(0.408,0.44]	chr17	663934	3	SS5_PROX	SS5_PROX:INTRON	MYO1D	ENSG00000176658.17	ENST00000318217.10:ENST00000394649.8:ENST00000577352.5:ENST00000579584.5:ENST00000581059.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	38	2	2.58179	3.76998	4.95817	0.024638	0.00372419	0.131869	0.0535094
chr9	112494912	112495012	4185869	0	+	0.31	(0.28,0.32]	chr9	381813	74	INTRON	INTRON	KIAA1958	ENSG00000165185.15	ENST00000337530.11:ENST00000536272.5:ENST00000374244.3	protein_coding	protein_coding	protein_coding	protein_coding	2	64	2	1.96376	3.769965	5.57617	0.0480066	3.41866e-4	0.153019	0.0164909
chr6	35904974	35905074	3088665	0	-	0.45	(0.44,0.476]	chr6	288896	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	SRPK1	ENSG00000096063.16	ENST00000373825.7:ENST00000423325.6:ENST00000346162.10:ENST00000361690.7:ENST00000510290.5:ENST00000508473.5:ENST00000512445.5:ENST00000513367.1:ENST00000507909.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	39	2	2.39604	3.76991	5.14378	0.0404291	0.00184943	0.161534	0.0388609
chrX	13356985	13357085	7622526	0	+	0.37	(0.35,0.378]	chrX	780353	153	INTRON	INTRON	LINC01203	ENSG00000226985.7	ENST00000669963.1:ENST00000661545.1:ENST00000659526.1:ENST00000656410.1:ENST00000661104.1:ENST00000456091.2:ENST00000655502.1:ENST00000671651.1:ENST00000656979.1:ENST00000656271.1:ENST00000661629.1:ENST00000661464.1:ENST00000668192.1:ENST00000665887.1:ENST00000659191.1:ENST00000667868.1:ENST00000653729.1:ENST00000656111.1	lncRNA	lncRNA	lncRNA	lncRNA	11	410	2	3.54059	3.769875	3.99916	1.379e-6	2.41988e-8	7.65967e-4	5.79662e-5
chr22	38506237	38506337	7588096	0	-	0.62	(0.57,1]	chr22	776781	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	DDX17	ENSG00000100201.23	ENST00000403230.3:ENST00000396821.8:ENST00000216019.11:ENST00000432525.5:ENST00000479734.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	15	248	2	3.14712	3.7698650000000002	4.39261	7.41056e-8	2.16754e-11	1.17768e-4	3.70116e-7
chr12	62930524	62930624	5350041	0	-	0.39	(0.378,0.408]	chr12	511235	798	INTRON	INTRON	PPM1H	ENSG00000111110.12	ENST00000228705.7:ENST00000548414.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	42	2	2.30961	3.76986	5.23011	0.055088	5.72873e-4	0.165463	0.0217398
chr3	38250710	38250806	1399421	0	+	0.385417	(0.378,0.408]	chr3	146753	3	INTRON	INTRON	OXSR1	ENSG00000172939.9	ENST00000311806.8:ENST00000467900.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	42	2	2.30961	3.76986	5.23011	0.055088	5.72873e-4	0.165463	0.0217398
chr11	66633005	66633104	4810967	0	+	0.333333	(0.32,0.35]	chr11	447879	32	INTRON	INTRON	RBM14-RBM4	ENSG00000248643.5	ENST00000412278.2:ENST00000511114.1:ENST00000421355.1:ENST00000500635.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	41	2	2.84569	3.7697450000000003	4.6938	0.0137794	0.0121137	0.0962599	0.0949306
chr17	78751445	78751545	6845527	0	-	0.33	(0.32,0.35]	chr17	677345	146	INTRON	INTRON	CYTH1	ENSG00000108669.17	ENST00000589296.5:ENST00000361101.8:ENST00000446868.8:ENST00000591455.5:ENST00000591574.5:ENST00000592497.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	41	2	2.84569	3.7697450000000003	4.6938	0.0137794	0.0121137	0.0962599	0.0949306
chr3	167707689	167707789	1853776	0	-	0.33	(0.32,0.35]	chr3	186313	24	INTRON	INTRON	PDCD10	ENSG00000114209.15	ENST00000392750.7:ENST00000473645.6:ENST00000497056.6:ENST00000492396.5:ENST00000461494.5:ENST00000470131.5:ENST00000475915.6:ENST00000487947.6:ENST00000471885.5:ENST00000479121.5:ENST00000462725.6:ENST00000492139.5:ENST00000483451.5:ENST00000494502.6:ENST00000464360.5:ENST00000481136.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	41	2	2.84569	3.7697450000000003	4.6938	0.0137794	0.0121137	0.0962599	0.0949306
chr12	111593651	111593751	5413176	0	-	0.28	[0,0.28]	chr12	516941	289	INTRON	INTRON	ATXN2	ENSG00000204842.18	ENST00000642389.2:ENST00000608853.5:ENST00000672613.1:ENST00000673436.1:ENST00000643669.2:ENST00000616825.4:ENST00000389153.10:ENST00000550104.5:ENST00000483311.6:ENST00000672335.1:ENST00000673557.1:ENST00000673283.1:ENST00000673449.1:ENST00000535949.5:ENST00000542287.6:ENST00000644883.1:ENST00000647305.1:ENST00000671792.1:ENST00000392645.6:ENST00000672105.1:ENST00000549455.1:ENST00000548492.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	76	2	2.06426	3.7697	5.47514	0.0168952	0.00354561	0.110899	0.0529186
chr16	58629030	58629128	6496378	0	-	0.55102	(0.515,0.57]	chr16	628651	39	INTRON	INTRON	CNOT1	ENSG00000125107.19	ENST00000317147.10:ENST00000569240.5:ENST00000567188.5:ENST00000441024.6:ENST00000565605.5:ENST00000564557.1:ENST00000569916.1:ENST00000569020.5:ENST00000568158.1:ENST00000569263.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	93	2	1.28155	3.76966	6.25777	0.0362578	3.29927e-6	0.153037	0.00128575
chr1	212782926	212783019	634693	0	-	0.354839	(0.35,0.378]	chr1	74961	1	INTRON	INTRON	NSL1	ENSG00000117697.15	ENST00000366977.8:ENST00000366978.5:ENST00000366976.3:ENST00000626725.1:ENST00000473995.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	93	2	3.21456	3.7696500000000004	4.32474	0.00420814	1.40122e-5	0.0572185	0.00279368
chr12	122096961	122097061	5240044	0	+	0.47	(0.44,0.476]	chr12	497496	173	INTRON	INTRON	MLXIP	ENSG00000175727.14	ENST00000319080.12	protein_coding	protein_coding	protein_coding	protein_coding	2	54	2	2.24189	3.7695600000000002	5.29723	0.0193405	3.83422e-4	0.108861	0.017699199999999998
chr4	1695901	1696001	2095056	0	-	0.27	[0,0.28]	chr4	207199	3	SS5_PROX	SS5_PROX:INTRON	SLBP	ENSG00000163950.13	ENST00000489418.6:ENST00000429429.6:ENST00000318386.8:ENST00000483348.5:ENST00000488267.5	protein_coding	protein_coding	protein_coding	protein_coding	2	117	2	3.57586	3.76954	3.96322	0.00187793	2.04896e-4	0.039073	0.0124557
chr19	48447243	48447343	7087471	0	+	0.46	(0.44,0.476]	chr19	709237	4	SS5_PROX	SS5_PROX:INTRON	GRWD1	ENSG00000105447.13	ENST00000598711.1:ENST00000253237.10	protein_coding	protein_coding	protein_coding	protein_coding	1	41	2	2.9195	3.76952	4.61954	0.0102021	0.00506805	0.0850389	0.0646039
chr1	109333556	109333655	520361	0	-	0.343434	(0.32,0.35]	chr1	61131	56	INTRON	INTRON	SORT1	ENSG00000134243.12	ENST00000538502.5:ENST00000256637.8:ENST00000466471.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	41	2	2.64129	3.7694850000000004	4.89768	0.0222819	0.00793135	0.124303	0.076155
chr11	47831173	47831272	4951993	0	-	0.323232	(0.32,0.35]	chr11	464617	36	INTRON	INTRON	NUP160	ENSG00000030066.14	ENST00000694866.1:ENST00000378460.7:ENST00000530326.5:ENST00000528071.5:ENST00000528501.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	41	2	2.64129	3.7694850000000004	4.89768	0.0222819	0.00793135	0.124303	0.076155
chr19	4404811	4404911	7001781	0	+	0.34	(0.32,0.35]	chr19	694508	16	INTRON	INTRON	CHAF1A	ENSG00000167670.16	ENST00000301280.10:ENST00000587580.1:ENST00000585854.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	41	2	2.64129	3.7694850000000004	4.89768	0.0222819	0.00793135	0.124303	0.076155
chr7	129045796	129045896	3636490	0	-	0.34	(0.32,0.35]	chr7	338148	37	INTRON	INTRON	TNPO3	ENSG00000064419.14	ENST00000627585.2:ENST00000265388.10:ENST00000471234.5:ENST00000482320.5:ENST00000471166.1	protein_coding	protein_coding	protein_coding	protein_coding	1	41	2	2.64129	3.7694850000000004	4.89768	0.0222819	0.00793135	0.124303	0.076155
chr1	197123180	197123266	613463	0	-	0.325581	(0.32,0.35]	chr1	72626	2	INTRON	INTRON	ASPM	ENSG00000066279.19	ENST00000367408.6:ENST00000367409.9:ENST00000680265.1:ENST00000294732.11:ENST00000680710.1:ENST00000681879.1:ENST00000680112.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	45	2	2.74415	3.7694849999999995	4.79482	0.0198267	0.00447781	0.109608	0.0610799
chr1	23332717	23332817	399472	0	-	0.43	(0.408,0.44]	chr1	47865	86	INTRON	INTRON	HNRNPR	ENSG00000125944.21	ENST00000478691.5:ENST00000302271.11:ENST00000374616.7:ENST00000374612.5:ENST00000675048.1:ENST00000606561.5:ENST00000427764.3:ENST00000463552.5:ENST00000470941.5:ENST00000476451.2	protein_coding	protein_coding	protein_coding	protein_coding	1	42	2	2.18807	3.76947	5.35087	0.0708044	3.00323e-4	0.184528	0.0155054
chr2	235566428	235566528	1042061	0	+	0.3	(0.28,0.32]	chr2	111222	415	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1:ENST00000402604.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	60	2	2.67153	3.76942	4.86731	0.0116253	0.00436402	0.0889104	0.060356
chr2	135058398	135058494	872727	0	+	0.291667	(0.28,0.32]	chr2	97733	4	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	RAB3GAP1	ENSG00000115839.19	ENST00000539493.3:ENST00000688088.1:ENST00000693554.1:ENST00000690785.1:ENST00000689880.1:ENST00000264158.13:ENST00000686403.1:ENST00000690208.1:ENST00000691478.1:ENST00000686114.1:ENST00000685967.1:ENST00000442034.5:ENST00000425393.1:ENST00000687199.1:ENST00000691339.1:ENST00000688182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	72	2	2.38504	3.76931	5.15358	0.0052282	0.00475871	0.0636201	0.0633615
chr20	62930196	62930296	7362493	0	-	0.38	(0.378,0.408]	chr20	751216	10	INTRON	INTRON	DIDO1	ENSG00000101191.17	ENST00000266070.8:ENST00000370371.8	protein_coding	protein_coding	protein_coding	protein_coding	6	221	2	3.58064	3.7692550000000002	3.9578700000000002	1.38197e-5	4.18448e-7	0.00295118	3.37394e-4
chr16	3703420	3703520	6434334	0	-	0.38	(0.378,0.408]	chr16	619370	121	INTRON	INTRON	TRAP1	ENSG00000126602.11	ENST00000246957.10:ENST00000538171.5:ENST00000571804.5:ENST00000574941.5:ENST00000576106.5:ENST00000571011.1:ENST00000570403.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	42	2	2.84663	3.7691600000000003	4.69169	0.0133954	0.00432302	0.0946278	0.0599409
chr5	31506627	31506727	2596748	0	-	0.39	(0.378,0.408]	chr5	246668	16	INTRON	INTRON	DROSHA	ENSG00000113360.17	ENST00000344624.8:ENST00000511367.6:ENST00000513349.5:ENST00000512076.1	protein_coding	protein_coding	protein_coding	protein_coding	1	42	2	2.84663	3.7691600000000003	4.69169	0.0133954	0.00432302	0.0946278	0.0599409
chr1	39863609	39863709	428072	0	-	0.34	(0.32,0.35]	chr1	52020	58	INTRON	INTRON	TRIT1	ENSG00000043514.17	ENST00000316891.10:ENST00000648678.1:ENST00000537440.5:ENST00000372818.5:ENST00000462797.5:ENST00000441669.6:ENST00000495175.6:ENST00000491865.5:ENST00000541099.5:ENST00000492612.6:ENST00000489945.5:ENST00000486825.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	46	2	2.89743	3.768945	4.64046	0.0127608	0.00724767	0.0926667	0.0756327
chr5	176161089	176161188	2774734	0	-	0.626263	(0.57,1]	chr5	261215	15	INTRON	INTRON	ENSG00000248596:ENSG00000287579	ENSG00000248596.8:ENSG00000287579.1	ENST00000515403.5:ENST00000663646.1:ENST00000503307.2	lncRNA	lncRNA	lncRNA	lncRNA	1	26	2	2.66438	3.7688550000000003	4.87333	0.0171563	3.21412e-4	0.104099	0.0159645
chr22	42615478	42615564	7527054	0	+	0.569767	(0.515,0.57]	chr22	769577	2	EXON_LNCRNA	EXON_LNCRNA	ENSG00000270022	ENSG00000270022.3	ENST00000602478.1	lncRNA	lncRNA	lncRNA	lncRNA	2	67	2	3.49683	3.7688450000000002	4.04086	0.0197045	6.73116e-5	0.120063	0.00723304
chr3	10091183	10091282	1362875	0	+	0.535354	(0.515,0.57]	chr3	143618	4	INTRON	INTRON	FANCD2	ENSG00000144554.13	ENST00000287647.7:ENST00000676013.1:ENST00000675286.1:ENST00000419585.5:ENST00000681997.1:ENST00000683263.1:ENST00000421731.5:ENST00000683933.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	36	2	2.68833	3.768845	4.84936	0.0184931	0.00146032	0.108861	0.0349875
chr17	76636403	76636502	6843597	0	-	0.484848	(0.476,0.515]	chr17	676980	22	INTRON	INTRON	ST6GALNAC1	ENSG00000070526.15	ENST00000592042.5:ENST00000156626.12:ENST00000359088.9:ENST00000590878.1:ENST00000589813.5:ENST00000590915.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	39	2	3.19119	3.768835	4.34648	0.0193566	0.00325748	0.108861	0.0524329
chr16	47474663	47474762	6343435	0	+	0.292929	(0.28,0.32]	chr16	608849	103	INTRON	INTRON	PHKB	ENSG00000102893.17	ENST00000566037.6:ENST00000566044.5:ENST00000299167.12:ENST00000696809.1:ENST00000323584.10:ENST00000565424.2:ENST00000567402.5:ENST00000563376.5:ENST00000564873.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	58	2	2.38391	3.768745	5.15358	0.0122525	0.0052282	0.0969406	0.0633615
chr22	17977811	17977911	7550203	0	-	0.47	(0.44,0.476]	chr22	771756	706	INTRON	INTRON	MICAL3	ENSG00000243156.9	ENST00000441493.7:ENST00000672019.1:ENST00000495076.5:ENST00000424046.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	40	2	2.60774	3.7687100000000004	4.92968	0.0255874	0.00171443	0.120269	0.0381936
chr10	100351475	100351572	4507702	0	+	0.360825	(0.35,0.378]	chr10	415054	28	INTRON	INTRON	SCD	ENSG00000099194.6	ENST00000370355.3	protein_coding	protein_coding	protein_coding	protein_coding	5	81	2	1.63783	3.76871	5.89959	0.0250627	1.52893e-4	0.133086	0.0112857
chr9	92073799	92073899	4286030	0	-	0.52	(0.515,0.57]	chr9	394027	30	INTRON	INTRON	SPTLC1	ENSG00000090054.16	ENST00000643599.1:ENST00000642671.1:ENST00000646481.1:ENST00000689261.1:ENST00000690095.1:ENST00000646534.1:ENST00000262554.7:ENST00000687427.1:ENST00000690139.1:ENST00000687972.1:ENST00000689401.1:ENST00000686600.1:ENST00000686799.1:ENST00000644140.1:ENST00000692458.1:ENST00000687817.1:ENST00000693147.1:ENST00000482632.6:ENST00000689423.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	46	2	2.62817	3.768645	4.90912	0.004048	0.0021669	0.0578376	0.0417866
chr3	197191925	197192025	1902439	0	-	0.47	(0.44,0.476]	chr3	190642	79	INTRON	INTRON	DLG1	ENSG00000075711.21	ENST00000667157.1:ENST00000346964.6:ENST00000656428.1:ENST00000663148.1:ENST00000655488.1:ENST00000357674.9:ENST00000671185.1:ENST00000658701.1:ENST00000667104.1:ENST00000661336.1:ENST00000669565.1:ENST00000670455.1:ENST00000656087.1:ENST00000670366.1:ENST00000653583.1:ENST00000661453.1:ENST00000665728.1:ENST00000664564.1:ENST00000660432.1:ENST00000660898.1:ENST00000657381.1:ENST00000659221.1:ENST00000654737.1:ENST00000669332.1:ENST00000659716.1:ENST00000664991.1:ENST00000419354.5:ENST00000661440.1:ENST00000667971.1:ENST00000670935.1:ENST00000668578.1:ENST00000666007.1:ENST00000661229.1:ENST00000661013.1:ENST00000436682.6:ENST00000662727.1:ENST00000422288.6:ENST00000448528.6:ENST00000656944.1:ENST00000392382.6:ENST00000450955.5:ENST00000658155.1:ENST00000669714.1:ENST00000654733.1:ENST00000469073.2:ENST00000419227.5:ENST00000392381.7:ENST00000471733.5:ENST00000419553.6:ENST00000661808.1:ENST00000453607.5:ENST00000456699.6:ENST00000392380.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	65	2	1.90381	3.768595	5.63338	0.0260626	7.86121e-5	0.122153	0.00738014
chr8	116743280	116743379	4034107	0	-	0.444444	(0.44,0.476]	chr8	368079	56	INTRON	INTRON	EIF3H	ENSG00000147677.12	ENST00000521861.6:ENST00000276682.8:ENST00000518949.5:ENST00000518995.5:ENST00000522800.5:ENST00000518034.5:ENST00000517974.1:ENST00000522453.1:ENST00000519046.5:ENST00000520813.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	75	2	1.90375	3.7685649999999997	5.63338	0.0156406	7.86121e-5	0.101393	0.00738014
chr14	30985282	30985382	5857462	0	-	0.53	(0.515,0.57]	chr14	556508	209	INTRON	INTRON	STRN3	ENSG00000196792.12	ENST00000355683.9:ENST00000357479.10:ENST00000555358.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	144	2	2.90903	3.7684749999999996	4.62792	3.57714e-5	1.90847e-6	0.00479158	9.42656e-4
chr12	123361009	123361109	5445170	0	-	0.45	(0.44,0.476]	chr12	521118	102	INTRON	INTRON	SBNO1	ENSG00000139697.14	ENST00000602398.3:ENST00000267176.8	protein_coding	protein_coding	protein_coding	protein_coding	2	83	2	3.4718	3.76845	4.0651	0.00136358	5.16491e-5	0.0336321	0.00585477
chr10	63408453	63408553	4634816	0	-	0.3	(0.28,0.32]	chr10	426236	276	INTRON	INTRON	JMJD1C	ENSG00000171988.20	ENST00000399262.7:ENST00000633035.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	47	2	2.39347	3.76844	5.14341	0.0504457	0.00185891	0.156383	0.039946
chr2	31975594	31975694	1090767	0	-	0.31	(0.28,0.32]	chr2	116913	124	INTRON	INTRON	MEMO1:DPY30	ENSG00000162959.14:ENSG00000162961.14	ENST00000295065.9:ENST00000446765.5:ENST00000404530.6:ENST00000490459.5:ENST00000426310.6:ENST00000413686.1:ENST00000407893.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	47	2	2.39347	3.76844	5.14341	0.0504457	0.00185891	0.156383	0.039946
chr1	19149795	19149895	386168	0	-	0.41	(0.408,0.44]	chr1	45901	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	UBR4	ENSG00000127481.15	ENST00000375254.8:ENST00000425413.5:ENST00000417040.1	protein_coding	protein_coding	protein_coding	protein_coding	1	42	2	3.00595	3.768415	4.53088	0.00781452	0.00669275	0.0759016	0.0738715
chr22	50254535	50254629	7603927	0	-	0.648936	(0.57,1]	chr22	778909	9	EXON_MRNA	EXON_MRNA:INTRON	MAPK12	ENSG00000188130.14	ENST00000497036.5:ENST00000215659.13:ENST00000622558.4:ENST00000488504.5:ENST00000395780.5:ENST00000467891.5:ENST00000496942.5:ENST00000482969.5:ENST00000497738.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	26	2	3.09313	3.768395	4.44366	0.00369015	0.00210922	0.0535094	0.0425419
chr4	94465371	94465470	1998517	0	+	0.434343	(0.408,0.44]	chr4	199549	83	INTRON	INTRON	PDLIM5	ENSG00000163110.15	ENST00000437932.5:ENST00000615540.4:ENST00000318007.9:ENST00000380180.7:ENST00000514830.5:ENST00000509333.5:ENST00000503974.5:ENST00000317968.9:ENST00000627587.2:ENST00000542407.5:ENST00000514743.5:ENST00000508216.5:ENST00000511767.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	39	2	3.20437	3.768375	4.33238	0.0218901	0.00306596	0.11491	0.0509893
chr8	39050614	39050713	3738836	0	+	0.414141	(0.408,0.44]	chr8	347538	32	INTRON	INTRON	ADAM9	ENSG00000168615.13	ENST00000678474.1:ENST00000676765.1:ENST00000676936.1:ENST00000677908.1:ENST00000677004.1:ENST00000677165.1:ENST00000481058.2:ENST00000676643.1:ENST00000676669.1:ENST00000679268.1:ENST00000677582.1:ENST00000676617.1:ENST00000677137.1:ENST00000678540.1:ENST00000677359.1:ENST00000678730.1:ENST00000487273.7:ENST00000678253.1:ENST00000676489.1:ENST00000379917.7:ENST00000468065.5:ENST00000481873.7:ENST00000676919.1:ENST00000678863.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	39	2	3.20437	3.768375	4.33238	0.0218901	0.00306596	0.11491	0.0509893
chr2	235517129	235517229	1041566	0	+	0.52	(0.515,0.57]	chr2	111217	219	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	46	2	2.26012	3.7683150000000003	5.27651	0.0160033	5.11033e-4	0.109464	0.020816
chr21	45411966	45412066	7419575	0	+	0.55	(0.515,0.57]	chr21	756409	61	INTRON	INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1	protein_coding	protein_coding	protein_coding	protein_coding	2	46	2	2.26012	3.7683150000000003	5.27651	0.0160033	5.11033e-4	0.109464	0.020816
chr20	47234642	47234740	7348276	0	-	0.295918	(0.28,0.32]	chr20	749259	45	INTRON	INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000467200.6:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4	protein_coding	protein_coding	protein_coding	protein_coding	1	47	2	2.57195	3.7682450000000003	4.96454	0.0331711	0.00344078	0.133994	0.0539802
chr15	83045303	83045402	6249219	0	-	0.545455	(0.515,0.57]	chr15	596405	30	INTRON	INTRON	BTBD1	ENSG00000064726.10	ENST00000261721.9:ENST00000379403.2:ENST00000559652.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	58	2	2.06758	3.7681950000000004	5.46881	0.0140038	9.03271e-5	0.0959618	0.00795396
chr16	29559856	29559956	6471195	0	-	0.56	(0.515,0.57]	chr16	625270	3	SS5_PROX	SS5_PROX:INTRON	ENSG00000288632:SMG1P2	ENSG00000288632.1:ENSG00000205534.6	ENST00000675579.1:ENST00000566127.1	lncRNA	lncRNA	lncRNA:transcribed_unprocessed_pseudogene	lncRNA:transcribed_unprocessed_pseudogene	3	58	2	2.06758	3.7681950000000004	5.46881	0.0140038	9.03271e-5	0.0959618	0.00795396
chr15	22794008	22794108	5976150	0	+	0.31	(0.28,0.32]	chr15	568352	68	INTRON	INTRON	NIPA1	ENSG00000170113.16	ENST00000437912.6:ENST00000561183.5:ENST00000560069.5:ENST00000337435.9:ENST00000560105.1:ENST00000559448.5:ENST00000557930.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	43	2	2.80157	3.768155	4.73474	0.0162835	0.0147132	0.106558	0.101453
chr17	47174563	47174663	6789246	0	-	0.3	(0.28,0.32]	chr17	669633	21	INTRON	INTRON	CDC27	ENSG00000004897.12	ENST00000066544.8:ENST00000531206.5:ENST00000533415.5:ENST00000527547.5:ENST00000526866.5:ENST00000525495.6:ENST00000573550.5:ENST00000575483.5:ENST00000532893.5:ENST00000528748.5:ENST00000532575.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	43	2	2.80157	3.768155	4.73474	0.0162835	0.0147132	0.106558	0.101453
chr3	134247023	134247123	1823627	0	-	0.31	(0.28,0.32]	chr3	183484	241	INTRON	INTRON	RYK	ENSG00000163785.13	ENST00000623711.4:ENST00000460933.5:ENST00000620660.4	protein_coding	protein_coding	protein_coding	protein_coding	1	43	2	2.80157	3.768155	4.73474	0.0162835	0.0147132	0.106558	0.101453
chr8	60197978	60198078	3956058	0	-	0.3	(0.28,0.32]	chr8	362946	76	INTRON	INTRON	CA8	ENSG00000178538.10	ENST00000317995.5	protein_coding	protein_coding	protein_coding	protein_coding	1	43	2	2.80157	3.768155	4.73474	0.0162835	0.0147132	0.106558	0.101453
chr12	122513266	122513366	5442104	0	-	0.3	(0.28,0.32]	chr12	520552	1	SS5_PROX	SS5_PROX:INTRON	RSRC2	ENSG00000111011.18	ENST00000331738.12:ENST00000532695.5:ENST00000433877.6:ENST00000527173.6:ENST00000392442.6:ENST00000525335.6:ENST00000344591.8:ENST00000528263.1:ENST00000527399.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	44	2	3.02632	3.768065	4.50981	0.0275554	0.0071944	0.123904	0.0756118
chr17	64652958	64653058	6817044	0	-	0.32	(0.28,0.32]	chr17	673955	460	INTRON	INTRON	SMURF2	ENSG00000108854.16	ENST00000262435.14:ENST00000582081.5:ENST00000578386.5:ENST00000585301.1:ENST00000578200.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	44	2	3.02632	3.768065	4.50981	0.0275554	0.0071944	0.123904	0.0756118
chr2	171969723	171969822	918841	0	+	0.30303	(0.28,0.32]	chr2	101210	24	INTRON	INTRON	HAT1	ENSG00000128708.13	ENST00000412731.5:ENST00000264108.5:ENST00000457761.6:ENST00000494601.5:ENST00000392584.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	44	2	3.02632	3.768065	4.50981	0.0275554	0.0071944	0.123904	0.0756118
chr3	50093966	50094057	1424539	0	+	0.307692	(0.28,0.32]	chr3	150124	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	RBM6:RBM5	ENSG00000004534.15:ENSG00000003756.17	ENST00000434592.5:ENST00000347869.8:ENST00000404526.6:ENST00000469838.5:ENST00000433556.6:ENST00000441305.5:ENST00000438369.5:ENST00000464087.6:ENST00000492472.1:ENST00000417905.1:ENST00000395174.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	44	2	3.02632	3.768065	4.50981	0.0275554	0.0071944	0.123904	0.0756118
chr7	127711615	127711714	3403003	0	+	0.323232	(0.32,0.35]	chr7	318124	36	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8	protein_coding	protein_coding	protein_coding	protein_coding	1	42	2	3.07975	3.76802	4.45629	0.0246089	0.00554235	0.12011	0.0674105
chr11	57507266	57507365	4953721	0	-	0.494949	(0.476,0.515]	chr11	465056	55	INTRON	INTRON	SLC43A1	ENSG00000149150.9	ENST00000278426.8:ENST00000528450.5:ENST00000530159.5:ENST00000533066.5:ENST00000524995.5:ENST00000534105.5:ENST00000533263.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	39	2	2.38442	3.767925	5.15143	0.0417472	0.00166579	0.161736	0.0369207
chr12	113164785	113164874	5417991	0	-	0.494382	(0.476,0.515]	chr12	517742	1	INTRON	INTRON	DDX54	ENSG00000123064.13	ENST00000306014.10:ENST00000314045.11:ENST00000546898.1:ENST00000550016.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	39	2	2.38442	3.767925	5.15143	0.0417472	0.00166579	0.161736	0.0369207
chr3	14475109	14475209	1370138	0	+	0.48	(0.476,0.515]	chr3	144379	24	INTRON	INTRON	SLC6A6	ENSG00000131389.18	ENST00000613060.4:ENST00000618278.4:ENST00000610642.4:ENST00000649500.1:ENST00000622186.5:ENST00000452151.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	39	2	2.38442	3.767925	5.15143	0.0417472	0.00166579	0.161736	0.0369207
chr9	37182215	37182314	4118277	0	+	0.242424	[0,0.28]	chr9	375384	221	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000322831.6:ENST00000461038.5:ENST00000488607.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	51	2	2.38757	3.7676700000000003	5.14777	0.0552962	0.00311898	0.165463	0.0512673
chr10	17669195	17669294	4399517	0	+	0.262626	[0,0.28]	chr10	406156	83	INTRON	INTRON	STAM	ENSG00000136738.15	ENST00000377524.8:ENST00000377500.1:ENST00000445846.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	51	2	2.44242	3.767615	5.09281	0.0491024	0.00372534	0.155269	0.0561984
chr17	66368319	66368419	6662955	0	+	0.21	[0,0.28]	chr17	650326	41	INTRON	INTRON	PRKCA	ENSG00000154229.12	ENST00000413366.8:ENST00000578063.5:ENST00000284384.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	51	2	2.44242	3.767615	5.09281	0.0491024	0.00372534	0.155269	0.0561984
chr1	50603764	50603864	448682	0	-	0.34	(0.32,0.35]	chr1	54219	72	INTRON	INTRON	FAF1	ENSG00000185104.21	ENST00000396153.7:ENST00000494400.5:ENST00000472808.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	49	2	3.16237	3.7675300000000003	4.37269	0.0154102	0.00550276	0.108569	0.0648867
chr7	100312321	100312421	3586531	0	-	0.53	(0.515,0.57]	chr7	334330	112	INTRON	INTRON	PMS2P1	ENSG00000078319.11	ENST00000685724.1:ENST00000692351.1:ENST00000685541.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	6	182	2	3.51491	3.767505	4.0201	9.61278e-6	1.37171e-7	0.00238374	1.68399e-4
chr1	21161667	21161767	393478	0	-	0.59	(0.57,1]	chr1	46836	487	INTRON	INTRON	EIF4G3	ENSG00000075151.24	ENST00000374935.7:ENST00000602326.6:ENST00000685872.1:ENST00000686579.1:ENST00000688741.1:ENST00000400422.6:ENST00000634879.2:ENST00000693470.1:ENST00000685814.1:ENST00000356916.7:ENST00000682284.1:ENST00000438975.5:ENST00000411888.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	33	2	2.73474	3.7674250000000002	4.80011	0.00241874	6.07135e-4	0.0454275	0.0226059
chr1	213109150	213109250	311284	0	+	0.6	(0.57,1]	chr1	35925	42	INTRON	INTRON	RPS6KC1	ENSG00000136643.12	ENST00000615329.4:ENST00000543354.5:ENST00000614059.4:ENST00000543470.5:ENST00000366960.8:ENST00000366959.4:ENST00000490299.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	33	2	2.73474	3.7674250000000002	4.80011	0.00241874	6.07135e-4	0.0454275	0.0226059
chr10	74407877	74407977	4458342	0	+	0.39	(0.378,0.408]	chr10	411580	89	INTRON	INTRON	ADK	ENSG00000156110.15	ENST00000672429.1:ENST00000539909.6:ENST00000286621.7:ENST00000673352.1:ENST00000673310.1:ENST00000672920.1:ENST00000672394.1:ENST00000372734.5:ENST00000673027.1:ENST00000541550.6:ENST00000672604.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	52	2	2.11103	3.7673050000000003	5.42358	0.0266911	8.39231e-4	0.134419	0.0266487
chr10	42808010	42808109	4428287	0	+	0.30303	(0.28,0.32]	chr10	408133	54	INTRON	INTRON	BMS1	ENSG00000165733.8	ENST00000374518.6	protein_coding	protein_coding	protein_coding	protein_coding	1	44	2	2.38101	3.767295	5.15358	0.0456017	0.0052282	0.164236	0.0633615
chr16	3677097	3677197	6434061	0	-	0.58	(0.57,1]	chr16	619331	2	SS5_PROX	SS5_PROX:INTRON	TRAP1	ENSG00000126602.11	ENST00000246957.10:ENST00000538171.5:ENST00000575671.5:ENST00000573872.5:ENST00000576335.5:ENST00000574175.1:ENST00000575854.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	33	2	2.47993	3.7672100000000004	5.05449	0.007207	1.79828e-4	0.0756278	0.0121697
chr5	138178095	138178167	2731434	0	-	0.416667	(0.408,0.44]	chr5	257195	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	BRD8	ENSG00000112983.18	ENST00000254900.10:ENST00000402931.5:ENST00000230901.9:ENST00000454473.5:ENST00000418329.5:ENST00000411594.6:ENST00000512140.5:ENST00000428808.5:ENST00000432618.5:ENST00000425764.5:ENST00000450756.5:ENST00000515254.1:ENST00000430331.1:ENST00000471437.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	44	2	3.20034	3.76717	4.334	0.011982	0.00398025	0.0962115	0.0549214
chr6	20124900	20125000	3069512	0	-	0.44	(0.408,0.44]	chr6	285257	3	SS3_PROX	SS3_PROX:INTRON	MBOAT1	ENSG00000172197.11	ENST00000324607.8	protein_coding	protein_coding	protein_coding	protein_coding	1	44	2	3.20034	3.76717	4.334	0.011982	0.00398025	0.0962115	0.0549214
chr7	128560422	128560522	3407648	0	+	0.35	(0.32,0.35]	chr7	318333	263	INTRON	INTRON	ENSG00000280828	ENSG00000280828.1	ENST00000479267.2	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	4	79	2	2.29914	3.76717	5.2352	0.00307433	0.0028268	0.0510029	0.0472361
chr1	65613249	65613347	139133	0	+	0.326531	(0.32,0.35]	chr1	15568	26	INTRON	INTRON	LEPR	ENSG00000116678.20	ENST00000371060.7:ENST00000371059.7:ENST00000349533.11:ENST00000616738.4:ENST00000344610.12:ENST00000371058.1	protein_coding	protein_coding	protein_coding	protein_coding	1	42	2	2.40308	3.7671550000000003	5.13123	0.0417732	0.00394704	0.161736	0.0548259
chr5	43613222	43613308	2351021	0	+	0.337209	(0.32,0.35]	chr5	226796	2	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	NNT	ENSG00000112992.18	ENST00000505678.6:ENST00000512422.5:ENST00000264663.9:ENST00000652986.1:ENST00000670904.1:ENST00000653251.1:ENST00000660752.1:ENST00000654405.1:ENST00000344920.9:ENST00000657973.1:ENST00000654931.1:ENST00000657172.1:ENST00000512996.6:ENST00000658729.1:ENST00000660676.1:ENST00000671668.1:ENST00000662525.1:ENST00000669601.1:ENST00000656666.1:ENST00000515208.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	42	2	2.40308	3.7671550000000003	5.13123	0.0417732	0.00394704	0.161736	0.0548259
chr11	62841268	62841368	4961843	0	-	0.44	(0.408,0.44]	chr11	467074	3	SS5_PROX	SS5_PROX:INTRON	WDR74	ENSG00000133316.16	ENST00000525239.5:ENST00000538098.2	protein_coding	protein_coding	protein_coding	protein_coding	5	213	2	3.31435	3.767115	4.21988	1.71418e-4	1.89127e-7	0.0113605	2.16148e-4
chr1	66953592	66953692	139729	0	+	0.46	(0.44,0.476]	chr1	15662	55	INTRON	INTRON	MIER1	ENSG00000198160.15	ENST00000355977.10:ENST00000371018.7:ENST00000357692.6:ENST00000371016.5:ENST00000371014.5:ENST00000401041.6:ENST00000355356.3:ENST00000401042.7:ENST00000479067.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	40	2	2.5364	3.7671099999999997	4.99782	0.0309324	0.0013223	0.13151	0.0333932
chr16	87401178	87401277	6416904	0	+	0.454545	(0.44,0.476]	chr16	615628	11	INTRON	INTRON	MAP1LC3B	ENSG00000140941.14	ENST00000650688.1:ENST00000570189.5:ENST00000565788.1:ENST00000268607.10:ENST00000564844.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	40	2	2.5364	3.7671099999999997	4.99782	0.0309324	0.0013223	0.13151	0.0333932
chr2	61231663	61231759	1128092	0	-	0.447917	(0.44,0.476]	chr2	121201	17	INTRON	INTRON	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000411912.5:ENST00000463046.5:ENST00000472706.5:ENST00000453734.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	40	2	2.5364	3.7671099999999997	4.99782	0.0309324	0.0013223	0.13151	0.0333932
chr4	118619497	118619595	2025024	0	+	0.469388	(0.44,0.476]	chr4	201337	10	INTRON	INTRON	ENSG00000260404	ENSG00000260404.4	ENST00000567913.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	1	40	2	2.5364	3.7671099999999997	4.99782	0.0309324	0.0013223	0.13151	0.0333932
chr9	137390117	137390216	4376894	0	-	0.464646	(0.44,0.476]	chr9	403535	64	INTRON	INTRON	EXD3	ENSG00000187609.16	ENST00000340951.9:ENST00000490886.5:ENST00000460390.6:ENST00000479452.5:ENST00000475006.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	40	2	2.5364	3.7671099999999997	4.99782	0.0309324	0.0013223	0.13151	0.0333932
chr1	180791439	180791539	271192	0	+	0.46	(0.44,0.476]	chr1	31626	32	INTRON	INTRON	XPR1	ENSG00000143324.14	ENST00000367590.9:ENST00000367589.3	protein_coding	protein_coding	protein_coding	protein_coding	1	40	2	2.67572	3.766945	4.85817	0.0212064	0.00223254	0.113017	0.0435144
chr16	67777477	67777576	6505392	0	-	0.464646	(0.44,0.476]	chr16	629654	50	INTRON	INTRON	RANBP10	ENSG00000141084.12	ENST00000317506.8:ENST00000448631.6:ENST00000602506.5:ENST00000602677.5:ENST00000602525.5:ENST00000602638.5:ENST00000602815.5:ENST00000602887.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	40	2	2.67572	3.766945	4.85817	0.0212064	0.00223254	0.113017	0.0435144
chr20	47313583	47313683	7349079	0	-	0.45	(0.44,0.476]	chr20	749342	30	INTRON	INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000468376.2:ENST00000435836.5:ENST00000446894.5:ENST00000441977.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	50	2	2.39003	3.7669049999999995	5.14378	0.0106488	0.00184943	0.0915714	0.0388609
chr5	62567837	62567936	2364592	0	+	0.454545	(0.44,0.476]	chr5	228011	62	INTRON	INTRON	IPO11	ENSG00000086200.17	ENST00000424533.5:ENST00000325324.11:ENST00000409296.7:ENST00000511713.5:ENST00000511133.1:ENST00000413749.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	50	2	2.39003	3.7669049999999995	5.14378	0.0106488	0.00184943	0.0915714	0.0388609
chr6	169696462	169696562	3267074	0	-	0.47	(0.44,0.476]	chr6	303259	10	INTRON	INTRON	WDR27	ENSG00000184465.16	ENST00000448612.6:ENST00000648472.1:ENST00000423258.5:ENST00000647790.1:ENST00000647873.1:ENST00000649303.1:ENST00000647889.1:ENST00000648017.1:ENST00000650296.1:ENST00000546953.1:ENST00000649806.1:ENST00000474018.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	66	2	2.18344	3.76688	5.35032	0.0102102	3.02713e-4	0.0850389	0.0155054
chr4	76125355	76125455	2164197	0	-	0.53	(0.515,0.57]	chr4	213444	2	INTRON	INTRON	NUP54	ENSG00000138750.16	ENST00000695546.1:ENST00000695547.1:ENST00000695552.1:ENST00000508604.5:ENST00000507257.6:ENST00000264883.8:ENST00000510569.6:ENST00000515460.6:ENST00000695554.1:ENST00000695553.1:ENST00000695548.1:ENST00000695551.1:ENST00000695556.1:ENST00000695549.1:ENST00000695550.1:ENST00000695555.1:ENST00000514313.2:ENST00000514987.6:ENST00000502850.5:ENST00000508465.6:ENST00000512151.5:ENST00000504173.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	36	2	2.60899	3.7668600000000003	4.92473	0.0232669	0.00108255	0.118148	0.0300133
chr8	21932107	21932207	3711042	0	+	0.54	(0.515,0.57]	chr8	344395	101	INTRON	INTRON	XPO7	ENSG00000130227.17	ENST00000252512.14:ENST00000521303.5:ENST00000519769.5:ENST00000518017.1:ENST00000520754.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	36	2	2.60899	3.7668600000000003	4.92473	0.0232669	0.00108255	0.118148	0.0300133
chr3	129399104	129399202	1815518	0	-	0.510204	(0.476,0.515]	chr3	182525	2	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	RPL32P3	ENSG00000251474.7	ENST00000510078.5:ENST00000687239.1:ENST00000514355.5:ENST00000515866.5:ENST00000499631.2:ENST00000506593.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	5	176	2	3.31995	3.7666000000000004	4.21325	4.9394e-5	6.07314e-7	0.00608708	4.21822e-4
chr1	19415487	19415586	388205	0	-	0.353535	(0.35,0.378]	chr1	46374	34	UTR3	UTR3:EXON_MRNA:INTRON	CAPZB	ENSG00000077549.19	ENST00000264202.8:ENST00000264203.7:ENST00000375142.5:ENST00000482808.2:ENST00000674449.1:ENST00000674390.1:ENST00000375144.6:ENST00000674432.1:ENST00000433834.5:ENST00000674228.1:ENST00000459967.6:ENST00000489607.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	40	2	3.05136	3.7666	4.48184	0.0191702	0.00578894	0.108861	0.0684334
chr1	22070989	22071087	42388	0	+	0.357143	(0.35,0.378]	chr1	5090	13	INTRON	INTRON	ENSG00000289694:CDC42	ENSG00000289694.1:ENSG00000070831.18	ENST00000695855.1:ENST00000695856.1:ENST00000344548.8:ENST00000400259.5:ENST00000667384.2:ENST00000411827.2:ENST00000695858.1:ENST00000695857.1:ENST00000315554.14:ENST00000695859.1:ENST00000498236.1:ENST00000656825.1:ENST00000651171.1:ENST00000652582.1:ENST00000695860.1:ENST00000695796.1:ENST00000695797.1:ENST00000662562.2:ENST00000695798.1:ENST00000695799.1:ENST00000695800.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	40	2	3.05136	3.7666	4.48184	0.0191702	0.00578894	0.108861	0.0684334
chr3	179363434	179363524	1567090	0	+	0.355556	(0.35,0.378]	chr3	162092	6	INTRON	INTRON	MFN1	ENSG00000171109.19	ENST00000471841.6:ENST00000357390.8:ENST00000263969.9:ENST00000489329.5:ENST00000474903.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	40	2	3.05136	3.7666	4.48184	0.0191702	0.00578894	0.108861	0.0684334
chr16	20774241	20774341	6317685	0	+	0.5	(0.476,0.515]	chr16	604596	36	INTRON	INTRON	ACSM3	ENSG00000005187.12	ENST00000568235.5:ENST00000289416.10:ENST00000440284.6:ENST00000561795.5:ENST00000562251.5	protein_coding	protein_coding	protein_coding	protein_coding	4	74	2	1.86182	3.76648	5.67114	0.0178986	6.83906e-5	0.106365	0.00684369
chr1	169476654	169476754	582576	0	-	0.38	(0.378,0.408]	chr1	70211	1	SS5_PROX	SS5_PROX:INTRON	SLC19A2	ENSG00000117479.15	ENST00000236137.10:ENST00000367804.4:ENST00000646596.1	protein_coding	protein_coding	protein_coding	protein_coding	2	54	2	2.86955	3.766465	4.66338	0.0103469	0.00159247	0.0850389	0.0367961
chr12	53453189	53453283	5142894	0	+	0.329787	(0.32,0.35]	chr12	485374	5	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	PCBP2	ENSG00000197111.16	ENST00000546463.6:ENST00000437231.5:ENST00000447282.5:ENST00000359282.9:ENST00000549863.5:ENST00000359462.9:ENST00000550520.6:ENST00000552296.6:ENST00000550192.5:ENST00000551104.5	protein_coding	protein_coding	protein_coding	protein_coding	15	598	2	3.65473	3.76639	3.87805	1.38301e-7	6.05463e-8	1.76684e-4	1.07836e-4
chr4	188096462	188096560	2310215	0	-	0.397959	(0.378,0.408]	chr4	223502	31	INTRON	INTRON	TRIML2	ENSG00000179046.9	ENST00000682553.1:ENST00000512729.5:ENST00000326754.7:ENST00000503475.5:ENST00000503141.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	47	2	3.32016	3.76621	4.21226	0.0177403	0.00268328	0.11319	0.0464781
chr1	201963015	201963115	292417	0	+	0.41	(0.408,0.44]	chr1	33668	9	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	TIMM17A	ENSG00000134375.11	ENST00000367287.5:ENST00000478378.5:ENST00000482943.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	173	2	2.82707	3.766205	4.70534	1.37284e-4	9.57119e-7	0.0106749	5.54959e-4
chr6	7149994	7150094	2798787	0	+	0.28	[0,0.28]	chr6	263733	88	INTRON	INTRON	RREB1	ENSG00000124782.21	ENST00000379933.7:ENST00000491191.5:ENST00000471433.5:ENST00000379938.7:ENST00000467782.5:ENST00000349384.10:ENST00000334984.10:ENST00000475946.5:ENST00000483150.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	76	2	1.79953	3.766145	5.73276	0.0377477	0.00156565	0.156608	0.0360583
chr3	42614874	42614974	1406114	0	+	0.36	(0.35,0.378]	chr3	147655	38	INTRON	INTRON	NKTR	ENSG00000114857.19	ENST00000468735.6:ENST00000487466.5:ENST00000429888.5:ENST00000232978.13:ENST00000442970.5:ENST00000445842.1:ENST00000478488.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	43	2	2.32443	3.76593	5.20743	0.0544216	7.78116e-4	0.164972	0.0256531
chr10	49961869	49961968	4432830	0	+	0.454545	(0.44,0.476]	chr10	408699	30	INTRON	INTRON	TIMM23B:TIMM23B-AGAP6	ENSG00000204152.14:ENSG00000178440.8	ENST00000478381.5:ENST00000651259.3:ENST00000651763.1:ENST00000651208.1:ENST00000652716.1:ENST00000483296.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	50	2	2.44514	3.765865	5.08659	0.0087381	0.00226401	0.0845538	0.0425438
chr19	1615921	1616021	7112733	0	-	0.45	(0.44,0.476]	chr19	714592	1	SS3_PROX	SS3_PROX:INTRON	TCF3	ENSG00000071564.17	ENST00000344749.9:ENST00000611869.5:ENST00000262965.12:ENST00000588136.7:ENST00000453954.6:ENST00000593064.5:ENST00000592628.5:ENST00000590684.5:ENST00000590436.5:ENST00000651991.1:ENST00000395423.7:ENST00000585855.2:ENST00000610756.4:ENST00000590605.2:ENST00000586410.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	50	2	2.44514	3.765865	5.08659	0.0087381	0.00226401	0.0845538	0.0425438
chr14	102169523	102169620	5821580	0	+	0.463918	(0.44,0.476]	chr14	552341	20	INTRON	INTRON	WDR20	ENSG00000140153.18	ENST00000557485.5:ENST00000335263.9:ENST00000424963.6:ENST00000322340.9:ENST00000556807.1:ENST00000555879.5:ENST00000342702.8:ENST00000558567.5:ENST00000299135.6:ENST00000454394.2:ENST00000556094.1:ENST00000556511.2:ENST00000557186.5:ENST00000558854.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	67	2	1.55662	3.76584	5.97506	0.0688347	1.26309e-5	0.184298	0.00264613
chr19	11640592	11640690	7018250	0	+	0.387755	(0.378,0.408]	chr19	697716	3	INTRON	INTRON	ENSG00000197332	ENSG00000197332.9	ENST00000666937.1:ENST00000344893.4	lncRNA	lncRNA	lncRNA	lncRNA	2	51	2	2.41037	3.7658249999999995	5.12128	0.0100185	0.00251746	0.0880217	0.0446195
chr15	37100155	37100253	6144083	0	-	0.397959	(0.378,0.408]	chr15	584892	8	UTR5	UTR5:EXON_MRNA:INTRON	MEIS2	ENSG00000134138.20	ENST00000338564.9:ENST00000561208.6:ENST00000340545.9:ENST00000424352.6:ENST00000558313.5	protein_coding	protein_coding	protein_coding	protein_coding	2	51	2	2.35527	3.76577	5.17627	0.0121511	0.00208234	0.0963966	0.0411801
chr17	62539634	62539734	6653496	0	+	0.47	(0.44,0.476]	chr17	649352	29	INTRON	INTRON	TLK2	ENSG00000146872.19	ENST00000582809.5:ENST00000684213.1:ENST00000583843.5:ENST00000582195.6:ENST00000682085.1:ENST00000580705.5:ENST00000346027.10:ENST00000326270.13:ENST00000682203.1:ENST00000343388.11:ENST00000683536.1:ENST00000684440.1:ENST00000684772.1:ENST00000682274.1:ENST00000682827.1:ENST00000682075.1:ENST00000683104.1:ENST00000684012.1:ENST00000581041.5:ENST00000684553.1:ENST00000683737.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	50	2	2.33272	3.76576	5.1988	0.0129984	0.00151532	0.0991656	0.0352794
chr2	197492923	197493023	1307098	0	-	0.46	(0.44,0.476]	chr2	136786	2	SS5_PROX	SS5_PROX:INTRON	HSPD1	ENSG00000144381.18	ENST00000388968.8:ENST00000426480.2:ENST00000345042.6:ENST00000452200.6:ENST00000679291.1:ENST00000677403.1:ENST00000678621.1:ENST00000678545.1:ENST00000676933.1:ENST00000678170.1:ENST00000476746.6:ENST00000678969.1:ENST00000428204.6:ENST00000418022.2:ENST00000439605.2:ENST00000440114.2:ENST00000461097.2:ENST00000677792.1:ENST00000678761.1:ENST00000677913.1:ENST00000677454.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	97	2	1.24699	3.76575	6.28451	0.0484245	1.11581e-5	0.172383	0.00263978
chr12	122225125	122225219	5439708	0	-	0.585106	(0.57,1]	chr12	520192	5	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	DIABLO	ENSG00000184047.20	ENST00000443649.9:ENST00000650715.1:ENST00000464942.7:ENST00000353548.11:ENST00000644227.1:ENST00000644509.1:ENST00000342392.3:ENST00000645569.1:ENST00000267169.11:ENST00000540535.6:ENST00000541273.6:ENST00000541656.6:ENST00000446652.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	130	2	3.21324	3.765695	4.31815	8.10185e-7	4.86858e-8	5.51204e-4	9.12413e-5
chr2	128126960	128127060	862841	0	+	0.53	(0.515,0.57]	chr2	96724	2	SS3_PROX	SS3_PROX:INTRON	UGGT1	ENSG00000136731.13	ENST00000259253.11:ENST00000438277.5:ENST00000376723.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	37	2	3.03037	3.765695	4.50102	0.00608732	0.00510768	0.0676501	0.0646039
chr6	10903756	10903854	2811917	0	+	0.163265	[0,0.28]	chr6	264578	4	INTRON	INTRON	SYCP2L	ENSG00000153157.13	ENST00000341041.8:ENST00000283141.11:ENST00000543878.5:ENST00000487561.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	51	2	2.49527	3.7654750000000003	5.03568	0.0436497	0.00446141	0.14882	0.0610799
chrX	114015471	114015571	7868195	0	-	0.2	[0,0.28]	chrX	801551	236	INTRON	INTRON	XACT	ENSG00000241743.4	ENST00000468762.3:ENST00000649506.1	lncRNA	lncRNA	lncRNA	lncRNA	1	51	2	2.49527	3.7654750000000003	5.03568	0.0436497	0.00446141	0.14882	0.0610799
chr11	76350090	76350186	4991116	0	-	0.354167	(0.35,0.378]	chr11	471662	3	UTR3	UTR3:EXON_MRNA	THAP12	ENSG00000137492.9	ENST00000682527.1:ENST00000260045.8:ENST00000529901.1:ENST00000684059.1:ENST00000683600.1:ENST00000682046.1:ENST00000682978.1:ENST00000684702.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	43	2	2.78212	3.76536	4.7486	0.0168532	0.00418965	0.103549	0.0591344
chr14	31100387	31100477	5857878	0	-	0.355556	(0.35,0.378]	chr14	556518	4	UTR3	UTR3:EXON_MRNA	HECTD1	ENSG00000092148.14	ENST00000399332.6:ENST00000553700.5:ENST00000555843.5:ENST00000693685.1:ENST00000692835.1:ENST00000554882.6:ENST00000611816.5:ENST00000688933.1:ENST00000692132.1:ENST00000557321.2:ENST00000692014.1:ENST00000693537.1:ENST00000686883.1:ENST00000688459.1:ENST00000691390.1:ENST00000553957.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	43	2	2.78212	3.76536	4.7486	0.0168532	0.00418965	0.103549	0.0591344
chr12	132093912	132094012	5250283	0	+	0.3	(0.28,0.32]	chr12	499298	20	INTRON	INTRON	EP400P1	ENSG00000185684.16	ENST00000407361.8:ENST00000446190.5:ENST00000690966.1:ENST00000689047.1:ENST00000454179.7:ENST00000689533.1:ENST00000688036.1:ENST00000688136.1:ENST00000488030.5:ENST00000389560.6:ENST00000689403.1:ENST00000443539.6:ENST00000392352.5:ENST00000539205.5:ENST00000332441.7	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	3	77	2	1.79721	3.76533	5.73345	0.0408024	1.71668e-4	0.1451	0.0113605
chr6	4028959	4029059	2789774	0	+	0.3	(0.28,0.32]	chr6	263481	71	INTRON	INTRON	PRPF4B	ENSG00000112739.17	ENST00000480058.5:ENST00000337659.11	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	103	2	3.63276	3.76526	3.89776	0.00114475	2.03846e-4	0.0308149	0.0124395
chr9	92285938	92286037	4287267	0	-	0.323232	(0.32,0.35]	chr9	394250	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	IARS1	ENSG00000196305.19	ENST00000375643.7:ENST00000443024.7:ENST00000447699.7:ENST00000683537.1:ENST00000684726.1:ENST00000683192.1:ENST00000683565.1:ENST00000682756.1:ENST00000684542.1:ENST00000683793.1:ENST00000683817.1:ENST00000682141.1:ENST00000682893.1:ENST00000684557.1:ENST00000498025.2:ENST00000682156.1:ENST00000627121.3:ENST00000683469.1:ENST00000683495.1:ENST00000682578.1:ENST00000682533.1:ENST00000472894.2:ENST00000684757.1:ENST00000684445.1:ENST00000683376.1:ENST00000683679.1:ENST00000683119.1:ENST00000490438.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	158	2	2.60833	3.7646800000000002	4.92103	0.00240033	4.12141e-7	0.0440612	3.35076e-4
chr1	154259130	154259209	227934	0	+	0.341772	(0.32,0.35]	chr1	26337	1	SS5_PROX	SS5_PROX:INTRON	UBAP2L	ENSG00000143569.19	ENST00000343815.10:ENST00000271877.11:ENST00000613315.4:ENST00000428931.6:ENST00000361546.6:ENST00000495676.5:ENST00000433615.5:ENST00000428595.1:ENST00000465855.5:ENST00000484696.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	55	2	2.45306	3.764675	5.07629	0.00916394	0.00468114	0.0855292	0.0600108
chr4	73204896	73204996	2160287	0	-	0.3	(0.28,0.32]	chr4	212794	270	INTRON	INTRON	ANKRD17	ENSG00000132466.20	ENST00000358602.9:ENST00000558247.5:ENST00000330838.10:ENST00000509867.6:ENST00000561029.1:ENST00000559367.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	70	2	1.85772	3.764645	5.67157	0.0300199	9.48957e-4	0.142135	0.0281755
chr19	46733875	46733975	7195138	0	-	0.37	(0.35,0.378]	chr19	728923	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	STRN4	ENSG00000090372.15	ENST00000391910.7:ENST00000263280.11:ENST00000539396.5:ENST00000600358.7:ENST00000435164.6:ENST00000602397.5:ENST00000594704.5:ENST00000593979.6:ENST00000597063.6:ENST00000597021.6:ENST00000596012.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	53	2	2.17079	3.764535	5.35828	0.0225978	0.00135282	0.124921	0.0336321
chr7	72902387	72902486	3330022	0	+	0.363636	(0.35,0.378]	chr7	309565	109	INTRON	INTRON	POM121	ENSG00000196313.13	ENST00000627934.3:ENST00000395270.5	protein_coding	protein_coding	protein_coding	protein_coding	2	53	2	2.17079	3.764535	5.35828	0.0225978	0.00135282	0.124921	0.0336321
chr2	95866143	95866242	1178423	0	-	0.323232	(0.32,0.35]	chr2	125761	57	INTRON	INTRON	ANKRD36C	ENSG00000174501.15	ENST00000295246.7:ENST00000456556.5:ENST00000531153.5:ENST00000534304.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	55	2	2.19668	3.76443	5.33218	0.021398	0.00204346	0.123719	0.04086
chr17	20011451	20011551	6571806	0	+	0.27	[0,0.28]	chr17	639047	4	INTRON	INTRON	SPECC1	ENSG00000128487.19	ENST00000677148.1:ENST00000679048.1:ENST00000678019.1:ENST00000678315.1:ENST00000678321.1:ENST00000676570.1:ENST00000678651.1:ENST00000679049.1:ENST00000472876.5:ENST00000467722.3:ENST00000583528.6:ENST00000680019.1:ENST00000395527.9:ENST00000681593.1:ENST00000680830.1:ENST00000680124.1:ENST00000583482.7:ENST00000679255.1:ENST00000681202.1:ENST00000677914.1:ENST00000578321.2:ENST00000680374.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	47	2	2.90797	3.764405	4.62084	0.0313633	0.0118539	0.13151	0.0962115
chr2	171137353	171137453	1263864	0	-	0.24	[0,0.28]	chr2	133921	191	INTRON	INTRON	TLK1	ENSG00000198586.14	ENST00000431350.7:ENST00000360843.7:ENST00000359766.7:ENST00000521943.5:ENST00000409443.6:ENST00000413010.5:ENST00000470340.1:ENST00000466220.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	47	2	2.90797	3.764405	4.62084	0.0313633	0.0118539	0.13151	0.0962115
chr6	150974355	150974454	2998968	0	+	0.232323	[0,0.28]	chr6	280593	19	INTRON	INTRON	MTHFD1L	ENSG00000120254.16	ENST00000611279.4:ENST00000367321.8:ENST00000618312.4:ENST00000478643.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	47	2	2.90797	3.764405	4.62084	0.0313633	0.0118539	0.13151	0.0962115
chr7	32879857	32879942	3515504	0	-	0.423529	(0.408,0.44]	chr7	327779	4	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	KBTBD2	ENSG00000170852.12	ENST00000304056.9:ENST00000485611.5:ENST00000452926.1:ENST00000453627.1:ENST00000423022.1:ENST00000424468.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	50	2	2.39162	3.7643199999999997	5.13702	0.0105837	0.00202889	0.0911864	0.04086
chr9	120760266	120760366	4335126	0	-	0.55	(0.515,0.57]	chr9	398218	34	UTR3	UTR3:EXON_MRNA:INTRON	FBXW2	ENSG00000119402.18	ENST00000493559.1:ENST00000684405.1:ENST00000684001.1:ENST00000684047.1:ENST00000608872.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	131	2	2.80304	3.764115	4.72519	1.68851e-4	1.00012e-6	0.0112811	6.19632e-4
chr1	90991964	90992064	502227	0	-	0.28	[0,0.28]	chr1	59504	92	INTRON	INTRON	ZNF644	ENSG00000122482.22	ENST00000370440.5:ENST00000337393.10:ENST00000347275.9:ENST00000361321.5:ENST00000467231.5:ENST00000498303.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	64	2	2.52489	3.76376	5.00263	0.013055	0.0084136	0.093385	0.082518
chr3	15805961	15806061	1623905	0	-	0.28	[0,0.28]	chr3	168027	79	INTRON	INTRON	ANKRD28	ENSG00000206560.12	ENST00000399451.6:ENST00000412318.5:ENST00000439830.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	64	2	2.52489	3.76376	5.00263	0.013055	0.0084136	0.093385	0.082518
chr12	71913359	71913452	5169951	0	+	0.333333	(0.32,0.35]	chr12	489785	1	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	TBC1D15	ENSG00000121749.16	ENST00000550746.5:ENST00000485960.7:ENST00000462788.6:ENST00000319106.12:ENST00000483828.6:ENST00000548679.5:ENST00000546450.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	56	2	2.6297	3.7636900000000004	4.89768	0.00793135	0.00476699	0.076155	0.0636201
chr4	88761960	88762060	2199996	0	-	0.39	(0.378,0.408]	chr4	215919	24	INTRON	INTRON	FAM13A	ENSG00000138640.15	ENST00000395002.6:ENST00000264344.10:ENST00000503556.5:ENST00000511976.5:ENST00000508369.5:ENST00000513837.5:ENST00000504836.5:ENST00000507352.1:ENST00000502914.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	51	2	2.29798	3.76361	5.22924	0.0147606	0.00172721	0.106702	0.0374701
chr6	135457093	135457193	3227753	0	-	0.52	(0.515,0.57]	chr6	300078	2	SS5_PROX	SS5_PROX:INTRON	AHI1	ENSG00000135541.22	ENST00000681022.1:ENST00000681841.1:ENST00000680965.1:ENST00000681522.1:ENST00000681365.1:ENST00000681332.1:ENST00000680826.1:ENST00000367800.8:ENST00000265602.11:ENST00000681718.1:ENST00000679672.1:ENST00000681828.1:ENST00000679668.1:ENST00000680840.1:ENST00000457866.6:ENST00000679925.1:ENST00000680561.1:ENST00000679742.1:ENST00000681860.1:ENST00000680119.1:ENST00000681340.1:ENST00000679589.1:ENST00000679434.1:ENST00000679943.1:ENST00000681301.1:ENST00000681488.1:ENST00000679450.1:ENST00000681756.1:ENST00000681670.1:ENST00000679622.1:ENST00000367799.7:ENST00000680656.1:ENST00000680278.1:ENST00000680184.1:ENST00000531788.5:ENST00000681945.1:ENST00000327035.10:ENST00000681477.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	73	2	3.35609	3.76356	4.17103	0.00174131	2.07632e-5	0.0375363	0.00353137
chr5	32599756	32599849	2334899	0	+	0.387097	(0.378,0.408]	chr5	225374	3	INTRON	INTRON	SUB1	ENSG00000113387.12	ENST00000506237.5:ENST00000512913.5:ENST00000513013.5:ENST00000265073.9:ENST00000511615.5:ENST00000515355.5:ENST00000502897.5:ENST00000504789.5:ENST00000504016.1:ENST00000511175.1:ENST00000502453.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	53	2	2.78867	3.7635300000000003	4.73839	0.00837252	0.00226991	0.0774402	0.0437013
chr21	46202645	46202744	7470601	0	-	0.444444	(0.44,0.476]	chr21	761464	60	INTRON	INTRON	LSS	ENSG00000160285.15	ENST00000356396.8:ENST00000397728.8:ENST00000457828.6:ENST00000522411.5	protein_coding	protein_coding	protein_coding	protein_coding	13	254	2	2.29587	3.763525	5.23118	1.42916e-4	7.9148e-8	0.0103609	1.20268e-4
chr1	180080961	180081061	268733	0	+	0.48	(0.476,0.515]	chr1	31479	3	SS5_PROX	SS5_PROX:INTRON	CEP350	ENSG00000135837.16	ENST00000367607.8:ENST00000429851.5:ENST00000437245.1	protein_coding	protein_coding	protein_coding	protein_coding	1	40	2	2.40608	3.7634000000000003	5.12072	0.0425709	8.42139e-4	0.148082	0.0263691
chr3	44784149	44784246	1412448	0	+	0.484536	(0.476,0.515]	chr3	148175	29	INTRON	INTRON	KIF15	ENSG00000163808.17	ENST00000438321.5:ENST00000326047.9:ENST00000481166.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	40	2	2.40608	3.7634000000000003	5.12072	0.0425709	8.42139e-4	0.148082	0.0263691
chr8	29030177	29030277	3726263	0	+	0.33	(0.32,0.35]	chr8	346292	109	INTRON	INTRON	HMBOX1	ENSG00000147421.18	ENST00000287701.15:ENST00000558662.5:ENST00000397358.7:ENST00000560599.5:ENST00000523613.5:ENST00000521516.5:ENST00000519047.5:ENST00000355231.9:ENST00000524238.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	41	2	2.90786	3.763375	4.61889	0.0166646	0.00993008	0.102621	0.0877296
chr8	31082076	31082169	3728424	0	+	0.344086	(0.32,0.35]	chr8	346570	4	INTRON	INTRON	WRN	ENSG00000165392.11	ENST00000650667.1:ENST00000298139.7:ENST00000651642.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	41	2	2.90786	3.763375	4.61889	0.0166646	0.00993008	0.102621	0.0877296
chrX	114023570	114023670	7868276	0	-	0.35	(0.32,0.35]	chrX	801551	317	INTRON	INTRON	XACT	ENSG00000241743.4	ENST00000468762.3:ENST00000649506.1	lncRNA	lncRNA	lncRNA	lncRNA	1	41	2	2.90786	3.763375	4.61889	0.0166646	0.00993008	0.102621	0.0877296
chr21	43736067	43736164	7413323	0	+	0.43299	(0.408,0.44]	chr21	755522	16	INTRON	INTRON	PDXK	ENSG00000160209.19	ENST00000398081.5:ENST00000468090.5:ENST00000291565.9:ENST00000398085.7:ENST00000470029.5:ENST00000498040.5:ENST00000327574.4:ENST00000472777.5:ENST00000476313.5:ENST00000481512.5:ENST00000621478.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	50	2	2.44674	3.763285	5.07983	0.00868283	0.00247652	0.0842798	0.0446195
chr13	83023625	83023725	5633483	0	-	0.25	[0,0.28]	chr13	536804	2447	INTRON	INTRON	ENSG00000286385	ENSG00000286385.1	ENST00000663739.1	lncRNA	lncRNA	lncRNA	lncRNA	2	64	2	1.8986	3.763265	5.62793	0.0531512	0.0022037	0.179787	0.0417893
chr21	32758388	32758483	7440339	0	-	0.242105	[0,0.28]	chr21	759262	17	INTRON	INTRON	PAXBP1	ENSG00000159086.15	ENST00000331923.9:ENST00000443785.5:ENST00000290178.4:ENST00000472588.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	64	2	1.8986	3.763265	5.62793	0.0531512	0.0022037	0.179787	0.0417893
chr12	53666704	53666801	5329363	0	-	0.319588	(0.28,0.32]	chr12	508422	9	INTRON	INTRON	ATP5MC2	ENSG00000135390.21	ENST00000550241.1:ENST00000673498.1:ENST00000394349.9:ENST00000552242.5:ENST00000495596.5:ENST00000549164.5:ENST00000338662.6:ENST00000549748.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	47	2	2.62686	3.7632399999999997	4.89962	0.0289217	0.00425206	0.1274	0.0595557
chr13	46179616	46179716	5586773	0	-	0.31	(0.28,0.32]	chr13	533977	100	INTRON	INTRON	LCP1	ENSG00000136167.15	ENST00000398576.6:ENST00000323076.7:ENST00000442275.1:ENST00000460190.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	47	2	2.62686	3.7632399999999997	4.89962	0.0289217	0.00425206	0.1274	0.0595557
chr1	10400572	10400672	22488	0	+	0.41	(0.408,0.44]	chr1	2380	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	PGD	ENSG00000142657.21	ENST00000491493.5:ENST00000270776.13:ENST00000477958.5:ENST00000483936.5:ENST00000465632.5:ENST00000460189.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	50	2	2.33431	3.763165	5.19202	0.0129219	0.0016671	0.0990564	0.0369207
chr3	47642666	47642765	1683656	0	-	0.434343	(0.408,0.44]	chr3	171996	35	INTRON	INTRON	SMARCC1	ENSG00000173473.11	ENST00000254480.10:ENST00000425518.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	61	2	2.38928	3.7631499999999996	5.13702	0.0039105	0.00202889	0.0569957	0.04086
chr3	10261369	10261468	1364177	0	+	0.494949	(0.476,0.515]	chr3	143776	3	INTRON	INTRON	TATDN2	ENSG00000157014.11	ENST00000287652.8:ENST00000448281.7	protein_coding	protein_coding	protein_coding	protein_coding	1	41	2	2.23335	3.7630800000000004	5.29281	0.0634557	4.07635e-4	0.177047	0.0181306
chr2	241748129	241748227	1056441	0	+	0.5	(0.476,0.515]	chr2	112660	29	INTRON	INTRON	D2HGDH	ENSG00000180902.18	ENST00000403782.5:ENST00000436747.5:ENST00000321264.9:ENST00000400769.6:ENST00000437164.1:ENST00000454048.1:ENST00000417686.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	40	2	2.82673	3.762955	4.69918	0.0134403	0.00400966	0.0946278	0.057767
chr16	69994610	69994705	6508983	0	-	0.326316	(0.32,0.35]	chr16	630276	10	INTRON	INTRON	PDXDC2P-NPIPB14P	ENSG00000196696.13	ENST00000531894.5:ENST00000530079.5:ENST00000525331.6	lncRNA	lncRNA	lncRNA	lncRNA	1	41	2	2.56618	3.762945	4.95971	0.0274185	0.00663522	0.136498	0.0703181
chr17	82535680	82535780	6692764	0	+	0.34	(0.32,0.35]	chr17	654627	150	INTRON	INTRON	FOXK2	ENSG00000141568.21	ENST00000473637.6:ENST00000335255.10:ENST00000527313.6:ENST00000570585.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	41	2	2.56618	3.762945	4.95971	0.0274185	0.00663522	0.136498	0.0703181
chr2	200976300	200976399	1310923	0	-	0.323232	(0.32,0.35]	chr2	137226	27	UTR3	UTR3:EXON_MRNA	FAM126B	ENSG00000155744.10	ENST00000681958.1:ENST00000418596.7	protein_coding	protein_coding	protein_coding	protein_coding	1	41	2	2.56618	3.762945	4.95971	0.0274185	0.00663522	0.136498	0.0703181
chr9	124713307	124713407	4348635	0	-	0.35	(0.32,0.35]	chr9	399255	1176	INTRON	INTRON	NR6A1	ENSG00000148200.17	ENST00000487099.7:ENST00000373584.7:ENST00000416460.6:ENST00000344523.8	protein_coding	protein_coding	protein_coding	protein_coding	1	41	2	2.56618	3.762945	4.95971	0.0274185	0.00663522	0.136498	0.0703181
chr1	35100139	35100238	68120	0	+	0.393939	(0.378,0.408]	chr1	8682	22	INTRON	INTRON	ZMYM1	ENSG00000197056.11	ENST00000650449.1:ENST00000611874.4:ENST00000417119.5:ENST00000359858.9:ENST00000488455.5:ENST00000373330.1:ENST00000373329.5:ENST00000475654.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	38	2	2.78705	3.76272	4.73839	0.0135539	0.00837252	0.101363	0.0774402
chr11	17142478	17142578	4928415	0	-	0.4	(0.378,0.408]	chr11	461450	7	INTRON	INTRON	PIK3C2A	ENSG00000011405.14	ENST00000531428.1:ENST00000265970.11:ENST00000691414.1:ENST00000533645.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	38	2	2.78705	3.76272	4.73839	0.0135539	0.00837252	0.101363	0.0774402
chr12	111549482	111549582	5412728	0	-	0.4	(0.378,0.408]	chr12	516916	238	INTRON	INTRON	ATXN2	ENSG00000204842.18	ENST00000642389.2:ENST00000608853.5:ENST00000672613.1:ENST00000673436.1:ENST00000643669.2:ENST00000616825.4:ENST00000389153.10:ENST00000550104.5:ENST00000483311.6:ENST00000672335.1:ENST00000492467.6:ENST00000673557.1:ENST00000673283.1:ENST00000673449.1:ENST00000535949.5:ENST00000542287.6:ENST00000644883.1:ENST00000647305.1:ENST00000671792.1:ENST00000392645.6:ENST00000672105.1:ENST00000471866.5:ENST00000549455.1:ENST00000548492.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	38	2	2.78705	3.76272	4.73839	0.0135539	0.00837252	0.101363	0.0774402
chr19	55201370	55201462	7213391	0	-	0.380435	(0.378,0.408]	chr19	732678	5	INTRON	INTRON	PTPRH	ENSG00000080031.10	ENST00000376350.8:ENST00000263434.5:ENST00000588559.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	38	2	2.78705	3.76272	4.73839	0.0135539	0.00837252	0.101363	0.0774402
chr1	100367800	100367899	172778	0	+	0.393939	(0.378,0.408]	chr1	18804	42	INTRON	INTRON	CDC14A	ENSG00000079335.20	ENST00000646665.1:ENST00000644844.1:ENST00000635056.2:ENST00000647005.1:ENST00000647203.1:ENST00000644676.1:ENST00000361544.11:ENST00000370124.8:ENST00000336454.5:ENST00000646583.1:ENST00000644813.1:ENST00000455467.6:ENST00000646563.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	39	2	3.1136	3.762645	4.41169	0.0199606	0.00443339	0.109608	0.061054
chr1	108945374	108945471	518987	0	-	0.391753	(0.378,0.408]	chr1	60902	7	INTRON	INTRON	CLCC1	ENSG00000121940.17	ENST00000690509.1:ENST00000687328.1:ENST00000685014.1:ENST00000685540.1:ENST00000686576.1:ENST00000688070.1:ENST00000691513.1:ENST00000686821.1:ENST00000692511.1:ENST00000689479.1:ENST00000687646.1:ENST00000687998.1:ENST00000687226.1:ENST00000693336.1:ENST00000689991.1:ENST00000687591.1:ENST00000691777.1:ENST00000690756.1:ENST00000688778.1:ENST00000685104.1:ENST00000689103.1:ENST00000687734.1:ENST00000686434.1:ENST00000685497.1:ENST00000691342.1:ENST00000686776.1:ENST00000692342.1:ENST00000689351.1:ENST00000692584.1:ENST00000692775.1:ENST00000687134.1:ENST00000690707.1:ENST00000675018.1:ENST00000690781.1:ENST00000691556.1:ENST00000689189.1:ENST00000687099.1:ENST00000685791.1:ENST00000687865.1:ENST00000687449.1:ENST00000688285.1:ENST00000686817.1:ENST00000369968.7:ENST00000674992.1:ENST00000675001.1:ENST00000369969.7:ENST00000356970.6:ENST00000369976.6:ENST00000688610.1:ENST00000675128.1:ENST00000693089.1:ENST00000675571.1:ENST00000675650.1:ENST00000369970.8:ENST00000674561.2:ENST00000675451.1:ENST00000675654.1:ENST00000675790.1:ENST00000675584.1:ENST00000692795.1:ENST00000691731.1:ENST00000689359.1:ENST00000676392.2:ENST00000676391.2:ENST00000676454.1:ENST00000674849.1:ENST00000675956.1:ENST00000302500.5:ENST00000675508.1:ENST00000688168.1:ENST00000693673.1:ENST00000692404.1:ENST00000686078.1:ENST00000690874.1:ENST00000692732.1:ENST00000685628.1:ENST00000676306.1:ENST00000348264.6:ENST00000675247.2:ENST00000676059.2:ENST00000674527.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	39	2	3.1136	3.762645	4.41169	0.0199606	0.00443339	0.109608	0.061054
chr12	50992709	50992809	5324428	0	-	0.38	(0.378,0.408]	chr12	507659	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SLC11A2	ENSG00000110911.17	ENST00000547688.7:ENST00000644495.1:ENST00000643884.1:ENST00000546636.5:ENST00000547198.5:ENST00000646264.1:ENST00000394904.9:ENST00000262052.9:ENST00000550782.5:ENST00000643123.1:ENST00000646740.1:ENST00000642227.1:ENST00000541174.6:ENST00000545993.7:ENST00000546743.5:ENST00000551231.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	39	2	3.1136	3.762645	4.41169	0.0199606	0.00443339	0.109608	0.061054
chr17	47586572	47586660	6622156	0	+	0.386364	(0.378,0.408]	chr17	645895	3	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NPEPPS	ENSG00000141279.17	ENST00000525037.5:ENST00000677710.1:ENST00000530173.6:ENST00000677226.1:ENST00000322157.9:ENST00000678461.1:ENST00000532729.6:ENST00000677120.1:ENST00000678909.1:ENST00000678496.1:ENST00000678262.1:ENST00000677370.1:ENST00000677664.1:ENST00000528751.6:ENST00000527298.5:ENST00000602788.5:ENST00000676492.1:ENST00000534814.5:ENST00000525401.1:ENST00000527964.5:ENST00000530514.6:ENST00000527360.1:ENST00000533538.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	39	2	3.1136	3.762645	4.41169	0.0199606	0.00443339	0.109608	0.061054
chr2	96352805	96352905	830381	0	+	0.38	(0.378,0.408]	chr2	92832	1	SS3_PROX	SS3_PROX:INTRON	NCAPH	ENSG00000121152.10	ENST00000240423.9:ENST00000427946.5:ENST00000435975.5:ENST00000477409.1:ENST00000456906.5:ENST00000455200.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	39	2	3.1136	3.762645	4.41169	0.0199606	0.00443339	0.109608	0.061054
chr3	50007012	50007112	1423630	0	+	0.4	(0.378,0.408]	chr3	149994	71	INTRON	INTRON	RBM6	ENSG00000004534.15	ENST00000442092.5:ENST00000443081.5:ENST00000419610.5:ENST00000441115.5:ENST00000422955.5:ENST00000454079.5:ENST00000266022.9:ENST00000425608.5:ENST00000434592.5:ENST00000464013.5:ENST00000483350.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	39	2	3.1136	3.762645	4.41169	0.0199606	0.00443339	0.109608	0.061054
chr7	107434228	107434328	3611727	0	-	0.38	(0.378,0.408]	chr7	336694	212	INTRON	INTRON	COG5	ENSG00000164597.15	ENST00000297135.9:ENST00000347053.8:ENST00000393603.7:ENST00000484237.5:ENST00000475638.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	39	2	3.1136	3.762645	4.41169	0.0199606	0.00443339	0.109608	0.061054
chr16	224443	224543	6426140	0	-	0.47	(0.44,0.476]	chr16	617444	33	INTRON	INTRON	LUC7L	ENSG00000007392.17	ENST00000337351.8:ENST00000426094.5:ENST00000397783.5:ENST00000629543.2:ENST00000490762.5:ENST00000293872.13:ENST00000419516.5:ENST00000397780.5:ENST00000418978.5:ENST00000430864.5:ENST00000443357.5:ENST00000494366.5:ENST00000469109.1:ENST00000428363.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	50	2	2.49823	3.7626299999999997	5.02703	0.00718224	0.00278015	0.0756118	0.0469265
chr7	152054605	152054705	3449800	0	+	0.46	(0.44,0.476]	chr7	322435	265	INTRON	INTRON	GALNT11	ENSG00000178234.13	ENST00000430044.7:ENST00000482812.1:ENST00000431668.1:ENST00000446096.5:ENST00000447778.5:ENST00000423337.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	51	2	2.69297	3.762495	4.83202	0.00525002	0.00333494	0.0633615	0.0528877
chr1	151633802	151633902	225938	0	+	0.31	(0.28,0.32]	chr1	25862	190	INTRON	INTRON	SNX27	ENSG00000143376.14	ENST00000642376.1:ENST00000368843.8:ENST00000458013.7:ENST00000368841.7:ENST00000642479.1:ENST00000642349.1:ENST00000643179.1:ENST00000643814.1:ENST00000642582.1:ENST00000644970.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	43	2	2.86113	3.76236	4.66359	0.0193496	0.0122675	0.108861	0.0969406
chr12	53623256	53623356	5328987	0	-	0.31	(0.28,0.32]	chr12	508405	219	INTRON	INTRON	ATF7	ENSG00000170653.19	ENST00000548446.6:ENST00000420353.7:ENST00000456903.8:ENST00000588232.5:ENST00000551480.2:ENST00000588078.5:ENST00000591397.1:ENST00000548118.6:ENST00000589726.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	43	2	2.86113	3.76236	4.66359	0.0193496	0.0122675	0.108861	0.0969406
chr2	214780259	214780359	1325890	0	-	0.29	(0.28,0.32]	chr2	138621	3	SS5_PROX	SS5_PROX:INTRON	BARD1	ENSG00000138376.11	ENST00000260947.9:ENST00000617164.5:ENST00000619009.5:ENST00000613374.5:ENST00000650978.1:ENST00000613706.5:ENST00000421162.2:ENST00000613192.2:ENST00000620057.4:ENST00000455743.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	43	2	2.86113	3.76236	4.66359	0.0193496	0.0122675	0.108861	0.0969406
chr5	78138952	78139051	2649574	0	-	0.272727	[0,0.28]	chr5	251700	93	INTRON	INTRON	AP3B1	ENSG00000132842.15	ENST00000519295.6:ENST00000255194.11:ENST00000695515.1:ENST00000695454.1:ENST00000695511.1:ENST00000695453.1:ENST00000695455.1:ENST00000695513.1:ENST00000695488.1:ENST00000695450.1:ENST00000695507.1:ENST00000695512.1:ENST00000695510.1:ENST00000695451.1:ENST00000695447.1:ENST00000695505.1:ENST00000519888.6:ENST00000695514.1:ENST00000517940.2:ENST00000517561.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	103	2	2.13248	3.76235	5.39222	0.00480628	0.00453865	0.0638089	0.0595107
chr4	109513246	109513346	2019373	0	+	0.49	(0.476,0.515]	chr4	200803	1	SS3_PROX	SS3_PROX:INTRON	SEC24B	ENSG00000138802.11	ENST00000504968.6:ENST00000399100.6:ENST00000265175.5	protein_coding	protein_coding	protein_coding	protein_coding	3	60	2	2.11679	3.76224	5.40769	0.0115627	6.23078e-4	0.0962115	0.0229151
chr1	67425723	67425800	477588	0	-	0.376623	(0.35,0.378]	chr1	57493	1	SS5_PROX	SS5_PROX:INTRON	SERBP1	ENSG00000142864.15	ENST00000370994.8:ENST00000361219.11:ENST00000370995.6:ENST00000370990.5:ENST00000490406.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	65	2	2.85516	3.762225	4.66929	0.00541617	0.00239229	0.066545000000000007	0.0440612
chr11	652684	652781	4889047	0	-	0.371134	(0.35,0.378]	chr11	457695	9	INTRON	INTRON	DEAF1	ENSG00000177030.19	ENST00000382409.4:ENST00000527170.5:ENST00000685854.1:ENST00000683307.1:ENST00000528864.6:ENST00000525626.6:ENST00000682936.1:ENST00000690068.1:ENST00000692634.1:ENST00000687329.1:ENST00000686001.1:ENST00000689835.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	119	2	3.52777	3.762135	3.9965	1.64039e-4	6.01383e-5	0.0116917	0.00639073
chr5	104086376	104086476	2441276	0	+	0.45	(0.44,0.476]	chr5	234398	39	INTRON	INTRON	LINC02163	ENSG00000251026.2	ENST00000662211.1:ENST00000514769.1:ENST00000666145.1	lncRNA	lncRNA	lncRNA	lncRNA	1	40	2	2.46135	3.7621149999999997	5.06288	0.0374637	0.00102416	0.140008	0.0294041
chrX	23875154	23875253	7774637	0	-	0.535354	(0.515,0.57]	chrX	794759	3	INTRON	INTRON	APOO	ENSG00000184831.14	ENST00000379226.9:ENST00000439528.5:ENST00000490078.2:ENST00000634188.1:ENST00000633372.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	48	2	2.27238	3.762105	5.25183	0.0161808	2.6074e-4	0.101453	0.014326
chr13	41331968	41332068	5474431	0	+	0.29	(0.28,0.32]	chr13	524475	2	INTRON	INTRON	NAA16	ENSG00000172766.19	ENST00000379406.8:ENST00000403412.7:ENST00000476980.5:ENST00000464857.5:ENST00000483215.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	43	2	2.53522	3.76197	4.98872	0.0310424	0.00838468	0.143457	0.0774402
chr17	61903564	61903663	6809353	0	-	0.313131	(0.28,0.32]	chr17	672733	55	INTRON	INTRON	INTS2	ENSG00000108506.13	ENST00000251334.7:ENST00000617492.4:ENST00000444766.7:ENST00000646745.1:ENST00000647009.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	43	2	2.53522	3.76197	4.98872	0.0310424	0.00838468	0.143457	0.0774402
chr5	37627030	37627130	2342874	0	+	0.31	(0.28,0.32]	chr5	226260	214	INTRON	INTRON	WDR70	ENSG00000082068.9	ENST00000504564.1:ENST00000511906.5:ENST00000265107.9:ENST00000510699.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	43	2	2.53522	3.76197	4.98872	0.0310424	0.00838468	0.143457	0.0774402
chr7	132920559	132920659	3644268	0	-	0.32	(0.28,0.32]	chr7	338848	332	INTRON	INTRON	CHCHD3	ENSG00000106554.13	ENST00000262570.10:ENST00000448878.6:ENST00000496427.5:ENST00000423635.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	43	2	2.53522	3.76197	4.98872	0.0310424	0.00838468	0.143457	0.0774402
chr1	147263629	147263726	212434	0	+	0.391753	(0.378,0.408]	chr1	23512	34	INTRON	INTRON	CHD1L	ENSG00000131778.20	ENST00000652587.1:ENST00000652616.1:ENST00000652494.1:ENST00000651207.1:ENST00000650721.1:ENST00000651226.1:ENST00000652161.1:ENST00000651510.1:ENST00000361293.10:ENST00000652278.1:ENST00000369259.4:ENST00000467213.5:ENST00000369258.8:ENST00000622533.4:ENST00000651410.1:ENST00000652486.1:ENST00000652346.1:ENST00000651407.1:ENST00000650828.1:ENST00000651070.1:ENST00000650714.1:ENST00000651420.1:ENST00000652357.1:ENST00000488864.5:ENST00000652188.1:ENST00000651820.1:ENST00000651231.1:ENST00000651206.1:ENST00000431239.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	114	2	3.39176	3.76189	4.13202	1.17224e-4	7.35047e-5	0.00929802	0.00767614
chr14	58269521	58269620	5731160	0	+	0.484848	(0.476,0.515]	chr14	544117	15	INTRON	INTRON	PSMA3	ENSG00000100567.13	ENST00000216455.9:ENST00000557087.5:ENST00000412908.6:ENST00000557508.5:ENST00000553677.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	70	2	2.21313	3.7618549999999997	5.31058	0.00401502	9.15544e-4	0.0578059	0.0278396
chr16	85573146	85573246	6415563	0	+	0.52	(0.515,0.57]	chr16	615470	164	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	11	322	2	3.73601	3.7617849999999997	3.78756	6.87249e-8	4.26513e-8	1.14014e-4	8.12811e-5
chr11	63950456	63950555	4801739	0	+	0.474747	(0.44,0.476]	chr11	445157	31	INTRON	INTRON	NAA40	ENSG00000110583.13	ENST00000338447.10:ENST00000536939.1:ENST00000534965.5:ENST00000377793.9:ENST00000544138.5:ENST00000539656.5:ENST00000542163.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	40	2	2.74063	3.76178	4.78293	0.0176095	0.00292033	0.105143	0.0494641
chr5	145667904	145668004	2744960	0	-	0.39	(0.378,0.408]	chr5	258670	1942	INTRON	INTRON	PRELID2	ENSG00000186314.12	ENST00000510259.5	protein_coding	processed_transcript	protein_coding	processed_transcript	1	39	2	2.45932	3.76172	5.06412	0.0346754	0.0030522	0.148144	0.0493883
chrX	124079718	124079815	7717967	0	+	0.257732	[0,0.28]	chrX	789620	13	INTRON	INTRON	STAG2	ENSG00000101972.20	ENST00000218089.13:ENST00000687071.1:ENST00000469481.1:ENST00000371160.5:ENST00000687852.1:ENST00000371145.8:ENST00000692982.1:ENST00000371157.7:ENST00000691035.1:ENST00000686802.1:ENST00000686127.1:ENST00000371144.7:ENST00000693144.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	49	2	3.13926	3.761565	4.38387	0.0501911	0.00563224	0.156383	0.0678837
chr12	50507838	50507938	5137178	0	+	0.33	(0.32,0.35]	chr12	484468	22	INTRON	INTRON	DIP2B	ENSG00000066084.13	ENST00000301180.10:ENST00000549620.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	60	2	2.1362	3.76152	5.38684	0.0291083	5.01164e-4	0.128029	0.020217099999999998
chr16	89529854	89529946	6420567	0	+	0.576087	(0.57,1]	chr16	616241	4	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	SPG7	ENSG00000197912.16	ENST00000647079.1:ENST00000646303.1:ENST00000643649.1:ENST00000643307.1:ENST00000566371.6:ENST00000644498.1:ENST00000645897.1:ENST00000643668.1:ENST00000644225.1:ENST00000645818.2:ENST00000645977.1:ENST00000645063.1:ENST00000646263.1:ENST00000643724.1:ENST00000644781.1:ENST00000644901.1:ENST00000645042.1:ENST00000646531.1:ENST00000646930.1:ENST00000642436.1:ENST00000644210.1:ENST00000564047.2:ENST00000646589.1:ENST00000268704.7:ENST00000646826.1:ENST00000646716.1:ENST00000643345.1:ENST00000341316.6:ENST00000645533.1:ENST00000646958.1:ENST00000642371.1:ENST00000643105.1:ENST00000645354.1:ENST00000642334.1:ENST00000647227.1:ENST00000646445.1:ENST00000564409.2:ENST00000643954.1:ENST00000646399.1:ENST00000644671.1:ENST00000643178.1:ENST00000644748.1:ENST00000643496.1:ENST00000647032.1:ENST00000644751.1:ENST00000642427.1:ENST00000643370.1:ENST00000645886.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	108	2	3.52259	3.761125	3.99966	7.68989e-7	6.0076e-7	4.91693e-4	4.52668e-4
chr5	65557810	65557908	2634241	0	-	0.357143	(0.35,0.378]	chr5	250195	25	INTRON	INTRON	CENPK	ENSG00000123219.13	ENST00000514814.5:ENST00000396679.6:ENST00000508421.5:ENST00000510693.5:ENST00000506282.6:ENST00000505960.5:ENST00000515497.5:ENST00000515873.5:ENST00000510768.5:ENST00000510354.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	122	2	2.91317	3.761075	4.60898	0.00189062	2.42012e-6	0.0392053	9.85429e-4
chr16	8958178	8958278	6442701	0	-	0.59	(0.57,1]	chr16	620597	19	INTRON	INTRON	USP7	ENSG00000187555.16	ENST00000673704.1:ENST00000344836.9:ENST00000563961.5:ENST00000569230.5:ENST00000566273.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	38	2	3.20917	3.7609700000000004	4.31277	0.00346264	2.02775e-4	0.0539802	0.0129814
chr1	180708196	180708296	270358	0	+	0.39	(0.378,0.408]	chr1	31620	254	INTRON	INTRON	XPR1	ENSG00000143324.14	ENST00000367590.9:ENST00000367589.3	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	2.85854	3.76096	4.66338	0.0107837	0.0103469	0.0920575	0.0850389
chr3	183731639	183731739	1580633	0	+	0.39	(0.378,0.408]	chr3	163056	24	INTRON	INTRON	YEATS2	ENSG00000163872.16	ENST00000305135.10	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	2.85854	3.76096	4.66338	0.0107837	0.0103469	0.0920575	0.0850389
chr5	127022226	127022326	2714475	0	-	0.4	(0.378,0.408]	chr5	255278	755	INTRON	INTRON	MARCHF3	ENSG00000173926.6	ENST00000308660.6:ENST00000502289.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	38	2	2.85854	3.76096	4.66338	0.0107837	0.0103469	0.0920575	0.0850389
chr8	41793453	41793552	3939020	0	-	0.40404	(0.378,0.408]	chr8	361127	38	INTRON	INTRON	ANK1	ENSG00000029534.21	ENST00000347528.8:ENST00000265709.13:ENST00000289734.13:ENST00000521407.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	38	2	2.85854	3.76096	4.66338	0.0107837	0.0103469	0.0920575	0.0850389
chr8	123084740	123084840	3850354	0	+	0.38	(0.378,0.408]	chr8	354676	4	SS5_PROX	SS5_PROX:INTRON	TBC1D31	ENSG00000156787.17	ENST00000519418.5:ENST00000287380.6:ENST00000522420.5:ENST00000327098.9:ENST00000518099.5:ENST00000521676.5:ENST00000524307.5:ENST00000522276.1:ENST00000518684.1:ENST00000521980.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	38	2	2.85854	3.76096	4.66338	0.0107837	0.0103469	0.0920575	0.0850389
chrX	102821380	102821479	7696426	0	+	0.383838	(0.378,0.408]	chrX	787610	39	INTRON	INTRON	LINC00630	ENSG00000223546.8	ENST00000661018.1:ENST00000431616.5:ENST00000668536.1:ENST00000440496.5:ENST00000420471.5:ENST00000663114.1:ENST00000658813.1:ENST00000435966.1:ENST00000656628.1	lncRNA	lncRNA	lncRNA	lncRNA	1	38	2	2.85854	3.76096	4.66338	0.0107837	0.0103469	0.0920575	0.0850389
chr8	18000587	18000686	3708547	0	+	0.565657	(0.515,0.57]	chr8	343990	66	INTRON	INTRON	PCM1	ENSG00000078674.19	ENST00000325083.13:ENST00000519253.5:ENST00000524226.5:ENST00000522275.5	protein_coding	protein_coding	protein_coding	protein_coding	5	132	2	2.72308	3.76081	4.79854	2.69455e-4	6.07609e-7	0.0145437	4.52668e-4
chr12	104479316	104479416	5210907	0	+	0.38	(0.378,0.408]	chr12	493315	214	INTRON	INTRON	CHST11	ENSG00000171310.11	ENST00000303694.6:ENST00000547956.1:ENST00000549260.5:ENST00000546689.1	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	2.71183	3.760755	4.80968	0.0170789	0.00679828	0.110899	0.0711802
chr7	130193123	130193223	3638630	0	-	0.39	(0.378,0.408]	chr7	338394	3	SS3_PROX	SS3_PROX:INTRON	TMEM209	ENSG00000146842.17	ENST00000397622.7:ENST00000473456.5:ENST00000462753.5	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	2.71183	3.760755	4.80968	0.0170789	0.00679828	0.110899	0.0711802
chr1	55099370	55099470	464683	0	-	0.53	(0.515,0.57]	chr1	56044	2	SS5_PROX	SS5_PROX:INTRON	USP24	ENSG00000162402.14	ENST00000294383.7	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	2.52504	3.760695	4.99635	0.029342	8.06602e-4	0.128055	0.0258804
chr12	4279419	4279518	5067466	0	+	0.545455	(0.515,0.57]	chr12	478287	1	INTRON	INTRON	CCND2	ENSG00000118971.9	ENST00000676411.1:ENST00000676279.1:ENST00000261254.8:ENST00000675880.1:ENST00000536537.2:ENST00000675468.1:ENST00000536795.1:ENST00000541542.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	36	2	2.52504	3.760695	4.99635	0.029342	8.06602e-4	0.128055	0.0258804
chr7	158685076	158685175	3688594	0	-	0.272727	[0,0.28]	chr7	342239	13	INTRON	INTRON	NCAPG2	ENSG00000146918.20	ENST00000356309.8:ENST00000432615.5:ENST00000409423.5:ENST00000441982.5:ENST00000467785.5:ENST00000409339.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	63	2	2.00649	3.7606849999999996	5.51488	0.040391	0.00314116	0.161534	0.0500389
chr9	87534188	87534288	4150175	0	+	0.38	(0.378,0.408]	chr9	378547	273	INTRON	INTRON	DAPK1	ENSG00000196730.13	ENST00000358077.9:ENST00000469640.6:ENST00000472284.5:ENST00000469067.5:ENST00000408954.8:ENST00000622514.4:ENST00000496522.5:ENST00000472344.1:ENST00000491893.5:ENST00000489291.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	41	2	2.53503	3.76045	4.98587	0.0319942	0.00152268	0.13174	0.0360297
chr9	93559317	93559416	4159136	0	+	0.393939	(0.378,0.408]	chr9	379208	2	INTRON	INTRON	FAM120A	ENSG00000048828.17	ENST00000277165.11:ENST00000427765.1:ENST00000652239.1	protein_coding	protein_coding	protein_coding	protein_coding	1	41	2	2.53503	3.76045	4.98587	0.0319942	0.00152268	0.13174	0.0360297
chr20	50741772	50741872	7286778	0	+	0.61	(0.57,1]	chr20	741301	33	INTRON	INTRON	PARD6B	ENSG00000124171.9	ENST00000371610.7:ENST00000396039.1	protein_coding	protein_coding	protein_coding	protein_coding	1	25	2	3.02967	3.76037	4.49107	0.00471306	0.00220544	0.0631419	0.0417893
chr1	12598203	12598303	379346	0	-	0.56	(0.515,0.57]	chr1	44547	20	INTRON	INTRON	DHRS3	ENSG00000162496.9	ENST00000616661.5:ENST00000464917.5:ENST00000482265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	36	2	2.83501	3.760345	4.68568	0.0117686	0.00270027	0.0894475	0.0479115
chr12	55981022	55981122	5144934	0	+	0.57	(0.515,0.57]	chr12	485923	1	SS5_PROX	SS5_PROX:INTRON	RAB5B	ENSG00000111540.16	ENST00000553116.5:ENST00000549505.5:ENST00000360299.10:ENST00000546810.1:ENST00000548068.5:ENST00000549915.5:ENST00000448789.2:ENST00000551459.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	36	2	2.83501	3.760345	4.68568	0.0117686	0.00270027	0.0894475	0.0479115
chr14	26858922	26859022	5662930	0	+	0.53	(0.515,0.57]	chr14	540149	149	INTRON	INTRON	ENSG00000258081	ENSG00000258081.4	ENST00000656336.1:ENST00000550024.1:ENST00000552303.1:ENST00000664825.1	lncRNA	lncRNA	lncRNA	lncRNA	1	36	2	2.83501	3.760345	4.68568	0.0117686	0.00270027	0.0894475	0.0479115
chr21	43801577	43801675	7413743	0	+	0.581633	(0.57,1]	chr21	755659	3	INTRON	INTRON	RRP1	ENSG00000160214.13	ENST00000497547.2:ENST00000467112.5:ENST00000471909.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	74	2	2.81549	3.7603150000000003	4.70514	3.90081e-4	2.16864e-7	0.0177751	2.38737e-4
chr7	155775951	155776050	3453235	0	+	0.59596	(0.57,1]	chr7	322755	9	UTR3	UTR3:EXON_MRNA	RBM33	ENSG00000184863.11	ENST00000401878.8:ENST00000341148.7	protein_coding	protein_coding	protein_coding	protein_coding	14	220	2	3.03919	3.760295	4.4814	2.60488e-7	3.34721e-11	2.73104e-4	6.32187e-7
chr11	67274268	67274367	4813949	0	+	0.59596	(0.57,1]	chr11	448241	29	INTRON	INTRON	GRK2	ENSG00000173020.11	ENST00000308595.10:ENST00000526285.1:ENST00000530291.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	25	2	2.91889	3.76025	4.60161	0.00719009	0.00142229	0.0756118	0.0340865
chr9	136727380	136727448	4375400	0	-	0.514706	(0.476,0.515]	chr9	403178	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SNHG7	ENSG00000233016.8	ENST00000414282.5:ENST00000685573.1:ENST00000686963.1:ENST00000653276.1:ENST00000416970.5:ENST00000668354.1:ENST00000447221.1	lncRNA	lncRNA	lncRNA	lncRNA	12	267	2	2.65991	3.760205	4.8605	3.27155e-5	3.39408e-7	0.00483284	2.94567e-4
chr17	27296786	27296886	6580558	0	+	0.21	[0,0.28]	chr17	639599	2	SS3_PROX	SS3_PROX:INTRON	WSB1	ENSG00000109046.15	ENST00000581440.5:ENST00000578312.5:ENST00000583742.1:ENST00000467843.6:ENST00000579733.5:ENST00000583193.5:ENST00000262394.7:ENST00000427287.6:ENST00000581185.5:ENST00000584354.1:ENST00000583786.5:ENST00000581089.1:ENST00000348811.6:ENST00000582208.1:ENST00000584114.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	93	2	2.30979	3.7601649999999998	5.21054	0.00758653	0.00378148	0.0749063	0.0562562
chr7	157348052	157348152	3455411	0	+	0.51	(0.476,0.515]	chr7	323052	76	INTRON	INTRON	DNAJB6	ENSG00000105993.15	ENST00000441561.5:ENST00000429029.6:ENST00000262177.9:ENST00000486083.6:ENST00000417758.5:ENST00000459889.5:ENST00000443280.5:ENST00000488001.5:ENST00000441291.5:ENST00000437030.5:ENST00000412557.5:ENST00000453383.5:ENST00000439402.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	50	2	2.48551	3.760085	5.03466	0.00756632	0.00252065	0.0773151	0.0446195
chr5	109343689	109343789	2701699	0	-	0.24	[0,0.28]	chr5	254313	1	SS5_PROX	SS5_PROX:INTRON	PJA2	ENSG00000198961.10	ENST00000361557.4:ENST00000361189.7	protein_coding	protein_coding	protein_coding	protein_coding	2	66	2	2.6958	3.760065	4.82433	0.0200334	0.00456758	0.109608	0.0622215
chr18	2755140	2755238	6865901	0	+	0.5	(0.476,0.515]	chr18	680131	5	INTRON	INTRON	SMCHD1	ENSG00000101596.17	ENST00000320876.11:ENST00000688342.1:ENST00000693213.1:ENST00000577880.5:ENST00000584897.5:ENST00000690757.1:ENST00000686763.1:ENST00000686864.1:ENST00000688708.1:ENST00000645355.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	51	2	2.68023	3.759925	4.83962	0.00480934	0.00353671	0.0602209	0.0546236
chr2	9527111	9527198	1064192	0	-	0.482759	(0.476,0.515]	chr2	113516	5	INTRON	INTRON	ADAM17	ENSG00000151694.14	ENST00000310823.8:ENST00000648548.1:ENST00000649227.1:ENST00000648857.1:ENST00000647979.1:ENST00000647610.1:ENST00000650116.1:ENST00000649686.1:ENST00000647622.1:ENST00000649972.1:ENST00000650241.1:ENST00000618923.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	51	2	2.68023	3.759925	4.83962	0.00480934	0.00353671	0.0602209	0.0546236
chr20	32770541	32770641	7256730	0	+	0.48	(0.476,0.515]	chr20	737113	73	INTRON	INTRON	DNMT3B	ENSG00000088305.19	ENST00000696232.1:ENST00000328111.6:ENST00000696231.1:ENST00000348286.6:ENST00000353855.6:ENST00000696233.1:ENST00000443239.7:ENST00000696234.1:ENST00000696235.1:ENST00000456297.6:ENST00000696236.1:ENST00000696237.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	50	2	2.26034	3.759895	5.25945	0.0166235	0.00111445	0.110511	0.0306328
chr16	75447557	75447657	6529352	0	-	0.45	(0.44,0.476]	chr16	632365	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	TMEM170A	ENSG00000166822.13	ENST00000357613.8:ENST00000561878.2:ENST00000568559.1:ENST00000569540.5:ENST00000567796.1:ENST00000566980.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	38	2	3.08591	3.75984	4.43377	0.0162803	0.00481262	0.101453	0.0638089
chr10	100351572	100351670	4507703	0	+	0.418367	(0.408,0.44]	chr10	415054	29	INTRON	INTRON	SCD	ENSG00000099194.6	ENST00000370355.3	protein_coding	protein_coding	protein_coding	protein_coding	2	50	2	2.27464	3.759825	5.24501	0.0158016	0.00137378	0.109464	0.0336718
chr3	60324523	60324623	1712859	0	-	0.44	(0.408,0.44]	chr3	176138	2438	INTRON	INTRON	FHIT	ENSG00000189283.10	ENST00000492590.6:ENST00000476844.5:ENST00000468189.5:ENST00000488467.5	protein_coding	protein_coding	protein_coding	protein_coding	1	41	2	2.27698	3.759825	5.24267	0.0583528	4.83767e-4	0.167723	0.0199261
chr6	87205023	87205123	2913753	0	+	0.43	(0.408,0.44]	chr6	275281	348	INTRON	INTRON	ZNF292	ENSG00000188994.13	ENST00000369577.8:ENST00000369578.6:ENST00000518845.1:ENST00000339907.8:ENST00000496806.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	50	2	2.27464	3.759825	5.24501	0.0158016	0.00137378	0.109464	0.0336718
chr5	140472994	140473094	2503553	0	+	0.42	(0.408,0.44]	chr5	239224	3	INTRON	INTRON	ANKHD1	ENSG00000131503.21	ENST00000297183.10:ENST00000360839.7:ENST00000421134.5:ENST00000246149.10	protein_coding	protein_coding	protein_coding	protein_coding	3	60	2	2.22268	3.7594000000000003	5.29612	0.00770925	0.00113523	0.0784002	0.0307488
chr11	87182684	87182784	4844263	0	+	0.27	[0,0.28]	chr11	451862	249	INTRON	INTRON	TMEM135	ENSG00000166575.17	ENST00000340353.11:ENST00000305494.6:ENST00000532959.5:ENST00000525018.5	protein_coding	protein_coding	protein_coding	protein_coding	1	46	2	2.63238	3.759315	4.88625	0.0259691	0.0173315	0.133676	0.104099
chr12	22663602	22663702	5095136	0	+	0.28	[0,0.28]	chr12	481256	20	INTRON	INTRON	ETNK1	ENSG00000139163.16	ENST00000671733.1:ENST00000266517.9:ENST00000538218.2:ENST00000673406.1:ENST00000673188.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	46	2	2.63238	3.759315	4.88625	0.0259691	0.0173315	0.133676	0.104099
chr6	27853524	27853623	2839173	0	+	0.565657	(0.515,0.57]	chr6	266461	15	UTR3	UTR3:EXON_MRNA	H2BC15	ENSG00000233822.6	ENST00000606613.1	protein_coding	protein_coding	protein_coding	protein_coding	4	115	2	3.16552	3.75923	4.35294	8.25408e-5	6.60583e-6	0.00812487	0.00181159
chr15	58931456	58931555	6194112	0	-	0.343434	(0.32,0.35]	chr15	590116	95	INTRON	INTRON	SLTM	ENSG00000137776.17	ENST00000380516.7:ENST00000492526.5:ENST00000557924.5:ENST00000558756.5:ENST00000249736.11:ENST00000559305.5:ENST00000480144.5:ENST00000628684.2:ENST00000559880.5:ENST00000558486.5:ENST00000560682.5:ENST00000557950.5:ENST00000559261.1:ENST00000560012.5:ENST00000484498.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	55	2	2.49929	3.7592299999999996	5.01917	0.00776612	0.0055659	0.0787356	0.0648867
chr1	167979108	167979208	248917	0	+	0.24	[0,0.28]	chr1	29564	37	INTRON	INTRON	DCAF6	ENSG00000143164.16	ENST00000450548.5:ENST00000470919.5:ENST00000432587.6:ENST00000367843.7:ENST00000470721.5:ENST00000367840.4:ENST00000312263.10:ENST00000455334.5:ENST00000491067.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	48	2	3.05114	3.7592	4.46726	0.0427997	0.0075493	0.148082	0.0773151
chr10	68580236	68580336	4441085	0	+	0.17	[0,0.28]	chr10	409524	56	INTRON	INTRON	TET1	ENSG00000138336.9	ENST00000373644.5	protein_coding	protein_coding	protein_coding	protein_coding	1	48	2	3.05114	3.7592	4.46726	0.0427997	0.0075493	0.148082	0.0773151
chr15	57003982	57004082	6032966	0	+	0.35	(0.32,0.35]	chr15	574669	22	INTRON	INTRON	TCF12	ENSG00000140262.18	ENST00000438423.6:ENST00000267811.9:ENST00000333725.10:ENST00000560190.5:ENST00000559609.5:ENST00000558908.5:ENST00000557843.5:ENST00000557947.5:ENST00000561152.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	60	2	2.18092	3.7591849999999996	5.33745	0.0256608	6.1485e-4	0.120491	0.0223951
chr9	77868765	77868865	4270317	0	-	0.45	(0.44,0.476]	chr9	392874	526	INTRON	INTRON	GNAQ	ENSG00000156052.11	ENST00000286548.9:ENST00000411677.1	protein_coding	protein_coding	protein_coding	protein_coding	2	83	2	3.67739	3.759155	3.84092	3.8961e-4	2.66933e-4	0.0177751	0.0149989
chr12	111506552	111506651	5412287	0	-	0.464646	(0.44,0.476]	chr12	516866	174	INTRON	INTRON	ATXN2	ENSG00000204842.18	ENST00000642389.2:ENST00000608853.5:ENST00000672613.1:ENST00000673436.1:ENST00000643669.2:ENST00000616825.4:ENST00000389153.10:ENST00000550104.5:ENST00000483311.6:ENST00000672335.1:ENST00000492467.6:ENST00000673557.1:ENST00000673283.1:ENST00000673449.1:ENST00000535949.5:ENST00000542287.6:ENST00000645162.1:ENST00000644883.1:ENST00000647305.1:ENST00000546483.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	38	2	2.49112	3.759075	5.02703	0.0315968	0.00278015	0.144381	0.0469265
chr8	125100516	125100615	3853564	0	+	0.474747	(0.44,0.476]	chr8	355199	56	INTRON	INTRON	NSMCE2	ENSG00000156831.8	ENST00000523741.5:ENST00000517532.5:ENST00000520866.5:ENST00000519010.5:ENST00000287437.8:ENST00000518013.5:ENST00000522563.5:ENST00000523824.5:ENST00000518146.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	38	2	2.49112	3.759075	5.02703	0.0315968	0.00278015	0.144381	0.0469265
chr11	17147828	17147928	4928472	0	-	0.35	(0.32,0.35]	chr11	461465	2	SS3_PROX	SS3_PROX:SS5_PROX:INTRON	PIK3C2A	ENSG00000011405.14	ENST00000531428.1:ENST00000265970.11:ENST00000691414.1:ENST00000533645.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	45	2	2.23182	3.75906	5.2863	0.068598	7.56575e-4	0.184298	0.0251966
chr12	53441929	53442018	5142825	0	+	0.52809	(0.515,0.57]	chr12	485350	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	PRR13	ENSG00000205352.11	ENST00000549924.5:ENST00000551003.5:ENST00000429243.7:ENST00000552846.1:ENST00000549068.5:ENST00000549740.5:ENST00000546581.5:ENST00000549581.5:ENST00000547368.5:ENST00000379786.8:ENST00000551945.5:ENST00000551365.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	46	2	2.1885	3.759035	5.32957	0.0202537	4.06834e-4	0.121364	0.0185763
chr11	70425501	70425601	4821901	0	+	0.42	(0.408,0.44]	chr11	449655	1	SS5_PROX	SS5_PROX:INTRON	CTTN	ENSG00000085733.16	ENST00000346329.7:ENST00000301843.13:ENST00000376561.7:ENST00000527962.5:ENST00000498223.3:ENST00000393747.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	41	2	2.89795	3.75902	4.62009	0.0110735	0.00504155	0.0873897	0.0646039
chr16	81473589	81473688	6405285	0	+	0.414141	(0.408,0.44]	chr16	615026	277	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8	protein_coding	protein_coding	protein_coding	protein_coding	1	41	2	2.89795	3.75902	4.62009	0.0110735	0.00504155	0.0873897	0.0646039
chr22	17642580	17642680	7475058	0	+	0.43	(0.408,0.44]	chr22	762152	33	INTRON	INTRON	BCL2L13	ENSG00000099968.18	ENST00000399781.5:ENST00000399782.5:ENST00000337612.9:ENST00000418951.6:ENST00000538149.5:ENST00000543133.5:ENST00000611738.4:ENST00000616863.4:ENST00000618481.4:ENST00000498133.5:ENST00000317582.10:ENST00000464649.1:ENST00000493680.5:ENST00000355028.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	41	2	2.89795	3.75902	4.62009	0.0110735	0.00504155	0.0873897	0.0646039
chr2	200858785	200858884	1310053	0	-	0.30303	(0.28,0.32]	chr2	137036	3	INTRON	INTRON	CLK1	ENSG00000013441.17	ENST00000321356.9:ENST00000461981.5:ENST00000473565.5:ENST00000432425.5:ENST00000409403.6:ENST00000434813.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	58	2	2.4721	3.758945	5.04579	0.00906617	0.00714672	0.0854289	0.0723634
chr22	49788485	49788584	7602825	0	-	0.282828	(0.28,0.32]	chr22	778629	2	INTRON	INTRON	BRD1	ENSG00000100425.19	ENST00000404760.6:ENST00000404034.5:ENST00000216267.12:ENST00000438393.5:ENST00000457780.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	58	2	2.4721	3.758945	5.04579	0.00906617	0.00714672	0.0854289	0.0723634
chr3	40310627	40310715	1401866	0	+	0.295455	(0.28,0.32]	chr3	147240	1	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	EIF1B	ENSG00000114784.4	ENST00000232905.4:ENST00000462088.1:ENST00000488260.1:ENST00000487151.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	58	2	2.4721	3.758945	5.04579	0.00906617	0.00714672	0.0854289	0.0723634
chr9	91944609	91944709	4285212	0	-	0.29	(0.28,0.32]	chr9	393926	203	INTRON	INTRON	ROR2	ENSG00000169071.15	ENST00000375715.5:ENST00000375708.4:ENST00000495386.5:ENST00000546883.1:ENST00000476440.1:ENST00000493846.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	58	2	2.4721	3.758945	5.04579	0.00906617	0.00714672	0.0854289	0.0723634
chr1	45678888	45678988	440511	0	-	0.33	(0.32,0.35]	chr1	53361	173	INTRON	INTRON	GPBP1L1	ENSG00000159592.11	ENST00000290795.7:ENST00000355105.8:ENST00000488278.5:ENST00000480941.1:ENST00000480083.5:ENST00000493083.5:ENST00000460859.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	55	2	2.13945	3.75889	5.37833	0.0254517	0.00174321	0.133676	0.0375363
chr6	167036739	167036838	3033752	0	+	0.333333	(0.32,0.35]	chr6	282692	24	INTRON	INTRON	CEP43	ENSG00000213066.13	ENST00000622353.4:ENST00000366847.9:ENST00000349556.4	protein_coding	protein_coding	protein_coding	protein_coding	2	55	2	2.13945	3.75889	5.37833	0.0254517	0.00174321	0.133676	0.0375363
chr10	74101397	74101497	4455552	0	+	0.53	(0.515,0.57]	chr10	411472	3	SS5_PROX	SS5_PROX:INTRON	VCL	ENSG00000035403.18	ENST00000623461.3:ENST00000372755.7:ENST00000624354.3:ENST00000211998.10:ENST00000478896.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	36	2	3.31388	3.758845	4.20381	0.0189208	0.00174704	0.108861	0.0386026
chr10	94568996	94569095	4499854	0	+	0.535354	(0.515,0.57]	chr10	414246	58	INTRON	INTRON	HELLS	ENSG00000119969.15	ENST00000239026.10:ENST00000371332.8:ENST00000348459.10:ENST00000419900.5:ENST00000394036.5:ENST00000394045.5:ENST00000462057.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	59	2	2.3252100000000002	3.758645	5.19208	0.00525266	3.4344e-4	0.0633615	0.0164987
chr7	131338481	131338580	3416548	0	+	0.353535	(0.35,0.378]	chr7	319187	101	INTRON	INTRON	MKLN1	ENSG00000128585.18	ENST00000421797.6:ENST00000416992.6:ENST00000429546.5:ENST00000446815.5:ENST00000494286.5:ENST00000352689.11:ENST00000494785.5:ENST00000458153.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	63	2	2.15877	3.7585249999999997	5.35828	0.0102036	0.00135282	0.089002	0.0336321
chr3	152298804	152298904	1535283	0	+	0.56	(0.515,0.57]	chr3	159981	287	INTRON	INTRON	MBNL1	ENSG00000152601.18	ENST00000477171.1:ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000461436.1:ENST00000495875.6:ENST00000324210.10:ENST00000493459.5:ENST00000459747.1:ENST00000460591.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	70	2	2.08662	3.7584049999999998	5.43019	0.00375149	2.60422e-4	0.0562562	0.0148796
chr1	25360705	25360802	47928	0	+	0.402062	(0.378,0.408]	chr1	5914	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TMEM50A	ENSG00000183726.11	ENST00000498135.5:ENST00000491936.5:ENST00000480937.5:ENST00000374358.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	114	2	1.3069	3.75839	6.20988	0.0273773	2.51359e-5	0.136498	0.00413384
chr1	96727884	96727983	168002	0	+	0.333333	(0.32,0.35]	chr1	18215	39	INTRON	INTRON	PTBP2	ENSG00000117569.19	ENST00000482253.5:ENST00000675735.1:ENST00000609116.5:ENST00000674951.1:ENST00000675080.1:ENST00000426398.3:ENST00000460706.5:ENST00000370197.5:ENST00000370198.5:ENST00000476419.5:ENST00000676292.1:ENST00000676096.1:ENST00000675365.1:ENST00000674579.1:ENST00000675401.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	45	2	2.79707	3.7583849999999996	4.7197	0.0170923	0.00568521	0.104099	0.0678837
chr3	17357383	17357483	1626551	0	-	0.35	(0.32,0.35]	chr3	168131	163	INTRON	INTRON	TBC1D5	ENSG00000131374.15	ENST00000253692.11:ENST00000696125.1:ENST00000414318.2:ENST00000429383.8:ENST00000446818.6:ENST00000429924.6:ENST00000465884.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	45	2	2.79707	3.7583849999999996	4.7197	0.0170923	0.00568521	0.104099	0.0678837
chr1	11279352	11279452	24814	0	+	0.41	(0.408,0.44]	chr1	2627	49	INTRON	INTRON	UBIAD1	ENSG00000120942.14	ENST00000376810.6:ENST00000376804.2:ENST00000486588.6:ENST00000483738.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	40	2	2.58624	3.7582400000000002	4.93024	0.0273686	0.00170369	0.123904	0.0381936
chr10	74611191	74611291	4460382	0	+	0.43	(0.408,0.44]	chr10	411605	103	INTRON	INTRON	ADK	ENSG00000156110.15	ENST00000672429.1:ENST00000539909.6:ENST00000286621.7:ENST00000673352.1:ENST00000673310.1:ENST00000672920.1:ENST00000672394.1:ENST00000372734.5:ENST00000673027.1:ENST00000541550.6:ENST00000672604.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	40	2	2.58624	3.7582400000000002	4.93024	0.0273686	0.00170369	0.123904	0.0381936
chr2	187550214	187550314	1289484	0	-	0.43	(0.408,0.44]	chr2	135627	52	INTRON	INTRON	TFPI	ENSG00000003436.16	ENST00000233156.9:ENST00000409676.5:ENST00000339091.8:ENST00000421427.5:ENST00000437725.5:ENST00000453013.5:ENST00000417013.5:ENST00000420747.1	protein_coding	protein_coding	protein_coding	protein_coding	1	40	2	2.58624	3.7582400000000002	4.93024	0.0273686	0.00170369	0.123904	0.0381936
chr7	44580383	44580480	3528439	0	-	0.618557	(0.57,1]	chr7	329082	6	UTR3	UTR3:EXON_MRNA:INTRON	TMED4	ENSG00000158604.15	ENST00000289577.9:ENST00000457408.7:ENST00000481238.1:ENST00000477639.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	27	2	3.34751	3.75816	4.16881	0.00574776	0.00122677	0.0681402	0.0320791
chrX	151972847	151972941	7908622	0	-	0.382979	(0.378,0.408]	chrX	804816	3	INTRON	INTRON	GABRE	ENSG00000102287.19	ENST00000370328.4:ENST00000441219.5:ENST00000417300.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	313	2	2.6379	3.7581100000000003	4.87832	3.69472e-5	2.30727e-8	0.00486939	5.10163e-5
chr2	131241928	131242028	865794	0	+	0.46	(0.44,0.476]	chr2	97244	21	INTRON	INTRON	PLEKHB2:POTEE	ENSG00000115762.17:ENSG00000188219.16	ENST00000404460.5:ENST00000683005.1:ENST00000356920.9:ENST00000358087.9:ENST00000514256.5:ENST00000626191.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	42	2	3.50584	3.75811	4.01038	0.0433743	8.66138e-4	0.148082	0.0266729
chr6	143170579	143170679	2976285	0	+	0.21	[0,0.28]	chr6	279149	50	INTRON	INTRON	AIG1	ENSG00000146416.19	ENST00000367601.8:ENST00000447498.5:ENST00000646199.1:ENST00000357847.9:ENST00000629020.2:ENST00000275235.8:ENST00000494282.6:ENST00000458219.1:ENST00000470265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	46	2	2.69187	3.7580999999999998	4.82433	0.0221271	0.0200334	0.123903	0.109608
chr7	121135157	121135252	3395116	0	+	0.263158	[0,0.28]	chr7	317759	9	INTRON	INTRON	CPED1	ENSG00000106034.18	ENST00000310396.10:ENST00000450913.6:ENST00000423795.5:ENST00000443817.1	protein_coding	protein_coding	protein_coding	protein_coding	2	65	2	2.62985	3.75805	4.88625	0.0173315	0.00581422	0.104099	0.068681
chr1	37546638	37546737	424190	0	-	0.353535	(0.35,0.378]	chr1	51278	52	INTRON	INTRON	SNIP1	ENSG00000163877.11	ENST00000296215.8:ENST00000468040.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	39	2	2.79643	3.75798	4.71953	0.013543	0.0103314	0.101363	0.0850389
chr4	144135362	144135462	2252028	0	-	0.37	(0.35,0.378]	chr4	220056	14	INTRON	INTRON	GYPA	ENSG00000170180.22	ENST00000641688.3:ENST00000360771.8:ENST00000642295.1:ENST00000324022.14:ENST00000646447.1:ENST00000535709.6:ENST00000508337.1:ENST00000643254.1:ENST00000643148.1:ENST00000642738.1:ENST00000642713.1:ENST00000512064.5:ENST00000512789.5:ENST00000504786.5:ENST00000503627.2:ENST00000509346.5:ENST00000514603.1:ENST00000644398.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	39	2	2.79643	3.75798	4.71953	0.013543	0.0103314	0.101363	0.0850389
chr2	178433573	178433669	930466	0	+	0.260417	[0,0.28]	chr2	102183	3	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CHROMR	ENSG00000223960.8	ENST00000453026.7:ENST00000690483.1:ENST00000436616.4:ENST00000665039.1:ENST00000663803.1:ENST00000661271.1:ENST00000691722.1:ENST00000659708.2:ENST00000691078.1:ENST00000454488.6:ENST00000691493.1:ENST00000662743.1:ENST00000671679.1:ENST00000671256.1	lncRNA	lncRNA	lncRNA	lncRNA	1	46	2	2.57033	3.7579700000000003	4.94561	0.0305273	0.0150263	0.143385	0.0994339
chr5	36898782	36898882	2338650	0	+	0.28	[0,0.28]	chr5	225949	124	INTRON	INTRON	NIPBL	ENSG00000164190.19	ENST00000282516.13:ENST00000448238.2:ENST00000652901.1	protein_coding	protein_coding	protein_coding	protein_coding	1	46	2	2.57033	3.7579700000000003	4.94561	0.0305273	0.0150263	0.143385	0.0994339
chr6	79201598	79201687	3142092	0	-	0.269663	[0,0.28]	chr6	292905	5	UTR3	UTR3:EXON_MRNA	HMGN3	ENSG00000118418.14	ENST00000344726.9:ENST00000275036.11:ENST00000620514.1	protein_coding	protein_coding	protein_coding	protein_coding	1	46	2	2.57033	3.7579700000000003	4.94561	0.0305273	0.0150263	0.143385	0.0994339
chr6	85553777	85553877	3150523	0	-	0.26	[0,0.28]	chr6	293782	35	INTRON	INTRON	ENSG00000271793:SNX14	ENSG00000271793.2:ENSG00000135317.14	ENST00000682083.1:ENST00000683074.1:ENST00000681965.1:ENST00000682171.1:ENST00000684150.1:ENST00000683785.1:ENST00000682497.1:ENST00000684647.1:ENST00000683643.1:ENST00000682023.1:ENST00000682022.1:ENST00000683542.1:ENST00000683126.1:ENST00000683857.1:ENST00000683898.1:ENST00000682854.1:ENST00000682491.1:ENST00000682174.1:ENST00000684239.1:ENST00000682939.1:ENST00000684570.1:ENST00000682057.1:ENST00000682878.1:ENST00000683880.1:ENST00000684422.1:ENST00000682504.1:ENST00000683726.1:ENST00000684680.1:ENST00000683196.1:ENST00000683458.1:ENST00000683803.1:ENST00000684281.1:ENST00000682991.1:ENST00000683754.1:ENST00000683481.1:ENST00000682455.1:ENST00000682034.1:ENST00000684451.1:ENST00000683583.1:ENST00000682776.1:ENST00000683873.1:ENST00000683878.1:ENST00000683195.1:ENST00000682995.1:ENST00000682374.1:ENST00000683698.1:ENST00000682454.1:ENST00000682694.1:ENST00000682412.1:ENST00000682682.1:ENST00000346348.7:ENST00000314673.8:ENST00000682633.1:ENST00000683085.1:ENST00000682688.1:ENST00000684319.1:ENST00000683577.1:ENST00000682709.1:ENST00000684299.1:ENST00000682133.1:ENST00000682594.1:ENST00000683473.1:ENST00000682106.1:ENST00000683364.1:ENST00000683436.1:ENST00000684220.1:ENST00000683909.1:ENST00000684118.1:ENST00000681981.1:ENST00000682738.1:ENST00000509338.6:ENST00000684717.1:ENST00000682660.1:ENST00000683073.1:ENST00000515216.6:ENST00000684581.1:ENST00000683479.1:ENST00000682464.1:ENST00000684108.1:ENST00000682514.1:ENST00000684017.1:ENST00000684273.1:ENST00000513865.5:ENST00000505648.5:ENST00000508980.5:ENST00000369627.6:ENST00000503491.5:ENST00000508658.6:ENST00000683097.1:ENST00000683541.1:ENST00000683759.1:ENST00000369635.7:ENST00000684462.1:ENST00000682168.1:ENST00000513869.2:ENST00000514419.6:ENST00000683999.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	46	2	2.57033	3.7579700000000003	4.94561	0.0305273	0.0150263	0.143385	0.0994339
chr19	10169746	10169844	7134612	0	-	0.377551	(0.35,0.378]	chr19	719202	10	INTRON	INTRON	DNMT1	ENSG00000130816.17	ENST00000340748.8:ENST00000359526.9:ENST00000592705.5:ENST00000679103.1:ENST00000677634.1:ENST00000676820.1:ENST00000677250.1:ENST00000677013.1:ENST00000677685.1:ENST00000677616.1:ENST00000676604.1:ENST00000678024.1:ENST00000676610.1:ENST00000678804.1:ENST00000679313.1:ENST00000677946.1:ENST00000586988.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	39	2	2.72498	3.757885	4.79079	0.0168499	0.00846427	0.11068	0.0776969
chr7	121223317	121223417	3396002	0	+	0.36	(0.35,0.378]	chr7	317781	733	INTRON	INTRON	CPED1	ENSG00000106034.18	ENST00000310396.10:ENST00000450913.6:ENST00000423795.5:ENST00000466055.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	39	2	2.72498	3.757885	4.79079	0.0168499	0.00846427	0.11068	0.0776969
chr8	102383502	102383602	4012464	0	-	0.36	(0.35,0.378]	chr8	367237	215	INTRON	INTRON	UBR5	ENSG00000104517.13	ENST00000520539.6:ENST00000220959.8:ENST00000521922.5	protein_coding	protein_coding	protein_coding	protein_coding	1	39	2	2.72498	3.757885	4.79079	0.0168499	0.00846427	0.11068	0.0776969
chr22	20102282	20102382	7478459	0	+	0.55	(0.515,0.57]	chr22	762741	71	INTRON	INTRON	DGCR8	ENSG00000128191.16	ENST00000383024.6:ENST00000351989.8:ENST00000495826.5:ENST00000407755.1:ENST00000498171.5:ENST00000491892.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	71	2	1.49552	3.757855	6.02019	0.0385038	1.31473e-5	0.159277	0.00286967
chr4	524647	524735	1907618	0	+	0.465909	(0.44,0.476]	chr4	191158	2	EXON_LNCRNA	EXON_LNCRNA:INTRON	PIGG	ENSG00000174227.16	ENST00000453061.7:ENST00000310340.9:ENST00000504346.5:ENST00000383028.8:ENST00000508562.1:ENST00000511247.1:ENST00000508669.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	74	2	1.64563	3.75777	5.86991	0.0363922	2.27008e-5	0.138959	0.00372337
chr16	67769856	67769955	6505314	0	-	0.494949	(0.476,0.515]	chr16	629647	5	INTRON	INTRON	RANBP10	ENSG00000141084.12	ENST00000317506.8:ENST00000448631.6:ENST00000602506.5:ENST00000602677.5:ENST00000602525.5:ENST00000602638.5:ENST00000602815.5:ENST00000602887.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	38	2	3.07422	3.7577499999999997	4.44128	0.0151924	0.00506023	0.0994339	0.0646039
chr21	6653822	6653922	7425710	0	-	0.45	(0.44,0.476]	chr21	757494	156	INTRON	INTRON	ENSG00000280145	ENSG00000280145.3	ENST00000625185.3:ENST00000623106.3:ENST00000624846.3:ENST00000623313.1:ENST00000624965.1	lncRNA	lncRNA	lncRNA	lncRNA	7	185	2	2.64317	3.7577299999999996	4.87229	2.07996e-4	2.99648e-7	0.0131276	2.73247e-4
chr4	139320876	139320976	2049885	0	+	0.55	(0.515,0.57]	chr4	203286	183	INTRON	INTRON	NAA15	ENSG00000164134.13	ENST00000296543.10:ENST00000398947.1:ENST00000482087.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	36	2	2.35125	3.75769	5.16413	0.0436431	8.14815e-4	0.162255	0.0263656
chr7	36427428	36427528	3307399	0	+	0.56	(0.515,0.57]	chr7	307184	4	SS5_PROX	SS5_PROX:INTRON	ANLN	ENSG00000011426.11	ENST00000396068.6:ENST00000265748.7:ENST00000428612.5:ENST00000457743.1	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	2.35125	3.75769	5.16413	0.0436431	8.14815e-4	0.162255	0.0263656
chr8	102852550	102852649	4013120	0	-	0.353535	(0.35,0.378]	chr8	367334	20	INTRON	INTRON	AZIN1	ENSG00000155096.15	ENST00000681985.1:ENST00000684566.1:ENST00000682725.1:ENST00000337198.10:ENST00000684459.1:ENST00000683787.1:ENST00000682014.1:ENST00000682969.1:ENST00000684721.1:ENST00000683965.1:ENST00000347770.8:ENST00000521536.6:ENST00000520402.5:ENST00000518353.5:ENST00000517581.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	41	2	3.21677	3.75758	4.29839	0.0294717	0.00313804	0.128055	0.0514466
chr11	941688	941786	4721244	0	+	0.520408	(0.515,0.57]	chr11	436630	4	INTRON	INTRON	AP2A2	ENSG00000183020.15	ENST00000529818.6:ENST00000332231.9:ENST00000448903.7:ENST00000534328.6:ENST00000525796.5:ENST00000529858.6:ENST00000693238.1:ENST00000687890.1:ENST00000687792.1:ENST00000528815.5:ENST00000528195.6:ENST00000531548.6:ENST00000534485.6:ENST00000527024.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	34	2	2.83188	3.7574899999999998	4.6831	0.0108207	0.00471288	0.0920575	0.0600108
chr3	47087812	47087912	1680828	0	-	0.54	(0.515,0.57]	chr3	171564	3	SS5_PROX	SS5_PROX:INTRON	SETD2	ENSG00000181555.22	ENST00000691544.1:ENST00000638947.2:ENST00000686876.1:ENST00000431180.5:ENST00000409792.4:ENST00000330022.11:ENST00000686773.1:ENST00000685005.1:ENST00000690461.1:ENST00000685505.1:ENST00000692883.1:ENST00000693321.1:ENST00000688290.1:ENST00000691902.1:ENST00000690157.1:ENST00000692362.1:ENST00000685237.1:ENST00000445387.5:ENST00000685399.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	34	2	2.83188	3.7574899999999998	4.6831	0.0108207	0.00471288	0.0920575	0.0600108
chr16	16559396	16559496	6311456	0	+	0.51	(0.476,0.515]	chr16	604098	594	INTRON	INTRON	ENSG00000260126	ENSG00000260126.2	ENST00000567465.2	lncRNA	lncRNA	lncRNA	lncRNA	2	56	2	2.66112	3.757455	4.85379	0.0044598	0.00234214	0.0592169	0.0442989
chr9	131187464	131187564	4216265	0	+	0.52	(0.515,0.57]	chr9	386634	1	SS5_PROX	SS5_PROX:INTRON	NUP214	ENSG00000126883.19	ENST00000695497.1:ENST00000695498.1:ENST00000695496.1:ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000525980.5:ENST00000526346.5:ENST00000531929.5:ENST00000651334.1:ENST00000524578.6:ENST00000453861.6:ENST00000470765.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	48	2	2.15051	3.757455	5.3644	0.0238113	1.52226e-4	0.118889	0.0106137
chr7	23404135	23404231	3502999	0	-	0.333333	(0.32,0.35]	chr7	326886	12	INTRON	INTRON	IGF2BP3	ENSG00000136231.14	ENST00000258729.8:ENST00000421467.6:ENST00000468263.5:ENST00000479504.5:ENST00000466809.6:ENST00000491719.5:ENST00000465058.5:ENST00000469723.5:ENST00000476938.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	128	2	3.07203	3.7574549999999998	4.44288	0.00109373	8.57644e-6	0.0304174	0.00210871
chr17	7668586	7668679	6719342	0	-	0.548387	(0.515,0.57]	chr17	659138	3	UTR3	UTR3:EXON_MRNA:INTRON	TP53	ENSG00000141510.18	ENST00000413465.6:ENST00000635293.1:ENST00000359597.8:ENST00000620739.4:ENST00000610292.4:ENST00000504290.5:ENST00000504937.5:ENST00000510385.5:ENST00000610623.4:ENST00000618944.4:ENST00000619186.4:ENST00000420246.6:ENST00000455263.6:ENST00000610538.4:ENST00000622645.4:ENST00000269305.9:ENST00000445888.6:ENST00000619485.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	70	2	2.32281	3.7574449999999997	5.19208	0.00252428	3.4344e-4	0.0446656	0.0164987
chr9	111363959	111364059	4314037	0	-	0.38	(0.378,0.408]	chr9	396590	3	SS3_PROX	SS3_PROX:INTRON	ECPAS	ENSG00000136813.15	ENST00000684092.1:ENST00000338205.9:ENST00000259335.8:ENST00000374383.1	protein_coding	protein_coding	protein_coding	protein_coding	3	61	2	2.18512	3.7573999999999996	5.32968	0.00902136	0.00119786	0.0851259	0.0315806
chr5	138574121	138574169	2732903	0	-	0.375	(0.35,0.378]	chr5	257498	1	CDS_STOP	CDS_STOP:CDS:UTR5:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	HSPA9	ENSG00000113013.16	ENST00000677693.1:ENST00000677064.1:ENST00000678300.1:ENST00000677425.1:ENST00000649578.2:ENST00000677988.1:ENST00000297185.9:ENST00000677527.1:ENST00000678794.1:ENST00000677553.1:ENST00000678384.1:ENST00000678051.1:ENST00000677066.1:ENST00000649692.2:ENST00000678551.1:ENST00000524109.2:ENST00000507115.6:ENST00000507097.5:ENST00000504902.6:ENST00000508003.2:ENST00000506477.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	72	2	1.86055	3.75736	5.65417	0.0168498	4.33402e-4	0.11068	0.0190829
chr22	21823939	21824039	7560949	0	-	0.28	[0,0.28]	chr22	773388	157	INTRON	INTRON	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	5	96	2	1.53476	3.7573549999999996	5.97995	0.0398264	6.65031e-4	0.161534	0.023496
chr16	21646087	21646187	6319415	0	+	0.39	(0.378,0.408]	chr16	604941	38	INTRON	INTRON	METTL9	ENSG00000197006.15	ENST00000567404.5:ENST00000396014.8:ENST00000358154.8:ENST00000568826.1	protein_coding	protein_coding	protein_coding	protein_coding	1	41	2	2.46373	3.75732	5.05091	0.0382831	0.00118558	0.141795	0.031662
chr21	45112038	45112138	7418227	0	+	0.39	(0.378,0.408]	chr21	756262	369	INTRON	INTRON	ADARB1	ENSG00000197381.17	ENST00000462214.5:ENST00000460734.5:ENST00000348831.9:ENST00000389861.7:ENST00000389863.8:ENST00000492414.5:ENST00000496664.5:ENST00000437626.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	41	2	2.46373	3.75732	5.05091	0.0382831	0.00118558	0.141795	0.031662
chr8	128019514	128019614	3862329	0	+	0.38	(0.378,0.408]	chr8	355521	24	INTRON	INTRON	PVT1	ENSG00000249859.13	ENST00000667305.1:ENST00000690350.1:ENST00000653522.1:ENST00000661830.1:ENST00000657289.1:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000657211.1:ENST00000653845.1:ENST00000651587.1:ENST00000692980.1:ENST00000654324.1:ENST00000657693.1:ENST00000666080.1:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000662410.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000657356.1:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000667714.1:ENST00000654105.1:ENST00000664995.1:ENST00000670714.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000668123.1:ENST00000666776.1:ENST00000659912.1:ENST00000670532.1:ENST00000523068.2:ENST00000671088.1:ENST00000663461.1:ENST00000513868.6:ENST00000692433.1:ENST00000523190.7:ENST00000685606.1:ENST00000690788.1:ENST00000685634.1:ENST00000653990.1:ENST00000655783.1:ENST00000656411.1:ENST00000664742.1:ENST00000655099.1:ENST00000662709.1:ENST00000512617.7:ENST00000660122.1:ENST00000666452.1:ENST00000659666.1:ENST00000659892.1:ENST00000521600.5:ENST00000522875.5:ENST00000653497.1:ENST00000668098.1:ENST00000659106.1:ENST00000666147.1:ENST00000658350.1:ENST00000656999.1:ENST00000664610.1:ENST00000671092.1:ENST00000653853.1	lncRNA	lncRNA	lncRNA	lncRNA	1	41	2	2.46373	3.75732	5.05091	0.0382831	0.00118558	0.141795	0.031662
chr16	81449634	81449734	6405045	0	+	0.41	(0.408,0.44]	chr16	615026	37	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8	protein_coding	protein_coding	protein_coding	protein_coding	2	55	2	1.88062	3.7572799999999997	5.63394	0.0534548	7.78928e-5	0.162935	0.00735438
chr1	246554781	246554880	680870	0	-	0.393939	(0.378,0.408]	chr1	79810	31	INTRON	INTRON	TFB2M	ENSG00000162851.8	ENST00000366514.5	protein_coding	protein_coding	protein_coding	protein_coding	3	61	2	2.04622	3.757275	5.46833	0.0149927	7.05018e-4	0.107704	0.024224
chr12	111545587	111545687	5412689	0	-	0.42	(0.408,0.44]	chr12	516916	199	INTRON	INTRON	ATXN2	ENSG00000204842.18	ENST00000642389.2:ENST00000608853.5:ENST00000672613.1:ENST00000673436.1:ENST00000643669.2:ENST00000616825.4:ENST00000389153.10:ENST00000550104.5:ENST00000483311.6:ENST00000672335.1:ENST00000492467.6:ENST00000673557.1:ENST00000673283.1:ENST00000673449.1:ENST00000535949.5:ENST00000542287.6:ENST00000644883.1:ENST00000647305.1:ENST00000671792.1:ENST00000392645.6:ENST00000672105.1:ENST00000471866.5:ENST00000549455.1:ENST00000548492.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	38	2	3.08738	3.757255	4.42713	0.0173083	0.00478231	0.104099	0.0636201
chr21	25739773	25739873	7389069	0	+	0.41	(0.408,0.44]	chr21	752856	38	INTRON	INTRON	GABPA	ENSG00000154727.11	ENST00000354828.7:ENST00000400075.4:ENST00000487266.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	38	2	3.08738	3.757255	4.42713	0.0173083	0.00478231	0.104099	0.0636201
chr3	129276793	129276893	1499428	0	+	0.43	(0.408,0.44]	chr3	156651	1	SS3_PROX	SS3_PROX:INTRON	COPG1	ENSG00000181789.14	ENST00000314797.10:ENST00000515725.5:ENST00000509889.5:ENST00000514478.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	38	2	3.08738	3.757255	4.42713	0.0173083	0.00478231	0.104099	0.0636201
chr10	67822813	67822913	4636219	0	-	0.46	(0.44,0.476]	chr10	426270	1	SS5_PROX	SS5_PROX:INTRON	DNAJC12	ENSG00000108176.15	ENST00000225171.7:ENST00000483798.6:ENST00000480963.5:ENST00000339758.7:ENST00000480180.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	50	2	2.54944	3.757175	4.96491	0.00591346	0.0034249	0.0694038	0.0517761
chr2	32189278	32189376	730017	0	+	0.469388	(0.44,0.476]	chr2	84180	16	INTRON	INTRON	SLC30A6	ENSG00000152683.14	ENST00000357055.7:ENST00000435660.5:ENST00000282587.9:ENST00000449777.5:ENST00000454324.5:ENST00000379343.6:ENST00000440718.5:ENST00000406369.2:ENST00000457724.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	50	2	2.54944	3.757175	4.96491	0.00591346	0.0034249	0.0694038	0.0517761
chr5	138166945	138167039	2731299	0	-	0.531915	(0.515,0.57]	chr5	257139	1	SS3_PROX	SS3_PROX:INTRON	BRD8	ENSG00000112983.18	ENST00000254900.10:ENST00000402931.5:ENST00000230901.9:ENST00000454473.5:ENST00000418329.5:ENST00000441656.5:ENST00000411594.6:ENST00000512140.5:ENST00000453824.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	56	2	2.53705	3.757135	4.97722	0.00186194	0.00168681	0.039946	0.0370386
chr2	241668685	241668772	1055794	0	+	0.494253	(0.476,0.515]	chr2	112535	1	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	ATG4B	ENSG00000168397.17	ENST00000405546.7:ENST00000402096.5:ENST00000494465.5:ENST00000404914.8:ENST00000482507.5:ENST00000344376.9:ENST00000428861.1:ENST00000460211.5:ENST00000479941.1:ENST00000475693.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	38	2	2.47949	3.757075	5.03466	0.0326974	0.00252065	0.145164	0.0446195
chr1	207774417	207774516	305133	0	+	0.393939	(0.378,0.408]	chr1	35121	37	INTRON	INTRON	CD46	ENSG00000117335.21	ENST00000695779.1:ENST00000695777.1:ENST00000695778.1:ENST00000496723.2:ENST00000695782.1:ENST00000695781.1:ENST00000695780.1:ENST00000636114.2:ENST00000367042.6:ENST00000322875.8:ENST00000322918.9:ENST00000354848.5:ENST00000357714.5:ENST00000358170.6:ENST00000367041.5:ENST00000367047.5:ENST00000695783.1:ENST00000695784.1:ENST00000469535.5:ENST00000360212.6:ENST00000480003.5:ENST00000695786.1:ENST00000490278.2:ENST00000488596.5:ENST00000471987.1:ENST00000462968.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	41	2	2.66785	3.75706	4.84627	0.0224639	0.00254319	0.11692	0.0465056
chr19	19322602	19322702	7034754	0	+	0.4	(0.378,0.408]	chr19	701329	3	INTRON	INTRON	MAU2	ENSG00000129933.21	ENST00000262815.13:ENST00000609122.5:ENST00000586189.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	41	2	2.66785	3.75706	4.84627	0.0224639	0.00254319	0.11692	0.0465056
chr20	50957418	50957507	7356124	0	-	0.404494	(0.378,0.408]	chr20	750158	4	INTRON	INTRON	DPM1	ENSG00000000419.14	ENST00000371582.8:ENST00000466152.5:ENST00000683048.1:ENST00000371588.10:ENST00000371584.9:ENST00000683466.1:ENST00000681979.1:ENST00000684708.1:ENST00000413082.1:ENST00000682754.1:ENST00000684628.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	41	2	2.66785	3.75706	4.84627	0.0224639	0.00254319	0.11692	0.0465056
chr4	150320590	150320690	2264759	0	-	0.52	(0.515,0.57]	chr4	220614	46	INTRON	INTRON	LRBA	ENSG00000198589.14	ENST00000357115.9:ENST00000651943.2:ENST00000510413.5:ENST00000503716.5:ENST00000509835.5:ENST00000648823.1:ENST00000648626.1:ENST00000651695.1:ENST00000648878.1:ENST00000651035.1:ENST00000507224.5:ENST00000649874.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	55	2	1.94493	3.757	5.56907	0.0204583	1.36543e-4	0.122204	0.0106702
chr11	33860565	33860664	4941719	0	-	0.454545	(0.44,0.476]	chr11	463033	6	INTRON	INTRON	LMO2	ENSG00000135363.12	ENST00000257818.3:ENST00000395833.7:ENST00000411482.1:ENST00000464025.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	50	2	2.21079	3.756845	5.3029	0.0194581	0.00102616	0.119831	0.029231300000000002
chr6	53543495	53543595	3108684	0	-	0.41	(0.408,0.44]	chr6	291140	197	INTRON	INTRON	GCLC	ENSG00000001084.13	ENST00000650454.1:ENST00000616923.5:ENST00000643939.1:ENST00000513939.6:ENST00000504525.1:ENST00000514004.5:ENST00000505197.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	55	2	2.45003	3.75673	5.06343	0.00990006	0.00101725	0.0838372	0.0293497
chr1	16368215	16368315	35770	0	+	0.52	(0.515,0.57]	chr1	4352	2	SS5_PROX	SS5_PROX:INTRON	SZRD1	ENSG00000055070.17	ENST00000475078.1:ENST00000471507.5:ENST00000401089.3:ENST00000486763.5:ENST00000401088.9:ENST00000475554.5:ENST00000476423.5:ENST00000472351.5:ENST00000492354.1:ENST00000472461.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	95	2	3.16037	3.7566550000000003	4.35294	4.09074e-4	6.60583e-6	0.0185763	0.00181159
chr6	159787061	159787151	3254677	0	-	0.433333	(0.408,0.44]	chr6	302541	7	INTRON	INTRON	TCP1	ENSG00000120438.12	ENST00000321394.12:ENST00000544255.5:ENST00000420894.6:ENST00000392168.6:ENST00000539756.1:ENST00000543532.5:ENST00000538530.5:ENST00000538128.5:ENST00000543517.5:ENST00000539948.5:ENST00000545764.1:ENST00000537390.5:ENST00000536394.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	111	2	3.28441	3.7566550000000003	4.2289	2.01433e-4	3.9467e-5	0.0124157	0.00535965
chr10	68356500	68356599	4638634	0	-	0.414141	(0.408,0.44]	chr10	426535	7	INTRON	INTRON	RUFY2	ENSG00000204130.14	ENST00000466493.5:ENST00000484083.5:ENST00000463210.6:ENST00000602465.6:ENST00000388768.6:ENST00000265865.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	40	2	2.51492	3.7566450000000002	4.99837	0.0329839	0.00131369	0.133816	0.0333932
chr9	130776853	130776953	4214493	0	+	0.42	(0.408,0.44]	chr9	386427	620	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000393293.4	protein_coding	protein_coding	protein_coding	protein_coding	1	40	2	2.51492	3.7566450000000002	4.99837	0.0329839	0.00131369	0.133816	0.0333932
chr8	22612516	22612609	3714435	0	+	0.548387	(0.515,0.57]	chr8	345004	1	SS3_PROX	SS3_PROX:INTRON	CCAR2	ENSG00000158941.17	ENST00000308511.9:ENST00000389279.7:ENST00000520861.5	protein_coding	protein_coding	protein_coding	protein_coding	2	47	2	2.82994	3.75652	4.6831	0.00471288	0.00168661	0.0600108	0.0381778
chr1	50549709	50549809	448135	0	-	0.42	(0.408,0.44]	chr1	54189	96	INTRON	INTRON	FAF1	ENSG00000185104.21	ENST00000396153.7:ENST00000494400.5:ENST00000472808.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	40	2	2.6542	3.7564599999999997	4.85872	0.0227514	0.00221911	0.117618	0.0435144
chr8	140896762	140896862	4079026	0	-	0.44	(0.408,0.44]	chr8	370543	56	INTRON	INTRON	PTK2	ENSG00000169398.20	ENST00000696786.1:ENST00000522684.5:ENST00000395218.3:ENST00000521059.5:ENST00000517887.5:ENST00000519993.5:ENST00000340930.7:ENST00000519419.5:ENST00000524357.5:ENST00000521791.5:ENST00000523067.5:ENST00000520828.5:ENST00000520475.5:ENST00000519881.5:ENST00000520892.5:ENST00000523803.5:ENST00000521907.5:ENST00000517453.5:ENST00000520045.5:ENST00000521395.5:ENST00000523675.1:ENST00000521332.5:ENST00000524040.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	40	2	2.6542	3.7564599999999997	4.85872	0.0227514	0.00221911	0.117618	0.0435144
chr2	151445945	151446040	893584	0	+	0.421053	(0.408,0.44]	chr2	98971	1	SS3_PROX	SS3_PROX:INTRON	RIF1	ENSG00000080345.18	ENST00000453091.6:ENST00000428287.6:ENST00000444746.7:ENST00000243326.9:ENST00000414861.6:ENST00000430328.6	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	2.49258	3.75643	5.02028	0.0314608	0.00303216	0.144381	0.0493883
chr14	20993482	20993579	5656077	0	+	0.536082	(0.515,0.57]	chr14	539206	4	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	METTL17	ENSG00000165792.18	ENST00000339374.11:ENST00000382985.8:ENST00000556670.6:ENST00000555533.6:ENST00000555640.6:ENST00000553564.5:ENST00000557550.6:ENST00000555670.1:ENST00000555902.6:ENST00000554354.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	190	2	3.27096	3.756425	4.24189	2.7746e-6	5.68388e-7	0.00107199	4.46597e-4
chr9	37123548	37123647	4117685	0	+	0.383838	(0.378,0.408]	chr9	375364	15	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000322831.6:ENST00000461038.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	52	2	2.70298	3.75633	4.80968	0.00679828	0.00325723	0.0711802	0.0524329
chr15	92931868	92931967	6104013	0	+	0.555556	(0.515,0.57]	chr15	581428	24	INTRON	INTRON	ENSG00000279765:CHD2	ENSG00000279765.3:ENSG00000173575.22	ENST00000630790.1:ENST00000626874.2:ENST00000394196.9:ENST00000635856.1:ENST00000420239.7:ENST00000628375.2:ENST00000625990.3:ENST00000626782.2:ENST00000629136.1:ENST00000637572.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	115	2	3.50334	3.7562949999999997	4.00925	7.7342e-5	6.60157e-6	0.00784644	0.00181159
chr4	55610870	55610970	2150442	0	-	0.29	(0.28,0.32]	chr4	211629	13	INTRON	INTRON	NMU	ENSG00000109255.11	ENST00000511469.5:ENST00000264218.7:ENST00000505262.5:ENST00000507338.1:ENST00000515325.5:ENST00000509371.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	47	2	2.2609	3.7561549999999997	5.25141	0.0671429	0.00125199	0.183051	0.0328543
chr21	31717116	31717216	7437681	0	-	0.32	(0.28,0.32]	chr21	758689	104	INTRON	INTRON	SCAF4	ENSG00000156304.15	ENST00000286835.12:ENST00000399804.5:ENST00000434667.3:ENST00000485790.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	45	2	3.17453	3.75609	4.33765	0.039714	0.00429297	0.143072	0.0599065
chr15	92924952	92925052	6103943	0	+	0.48	(0.476,0.515]	chr15	581415	4	SS5_PROX	SS5_PROX:INTRON	ENSG00000279765:CHD2	ENSG00000279765.3:ENSG00000173575.22	ENST00000629685.2:ENST00000630790.1:ENST00000626874.2:ENST00000394196.9:ENST00000635856.1:ENST00000420239.7:ENST00000628375.2:ENST00000625990.3:ENST00000626782.2:ENST00000629136.1:ENST00000637572.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	42	2	3.49411	3.75594	4.01777	0.0411361	9.23453e-4	0.1451	0.0278392
chr10	118683350	118683449	4703689	0	-	0.393939	(0.378,0.408]	chr10	433843	71	UTR3	UTR3:EXON_MRNA:INTRON	CACUL1	ENSG00000151893.15	ENST00000544392.5:ENST00000369151.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	208	2	3.52497	3.755885	3.9868	7.60075e-6	2.13474e-6	0.00207253	9.07669e-4
chr3	196074595	196074658	1897480	0	-	0.603175	(0.57,1]	chr3	189977	2	SS3_PROX	SS3_PROX:INTRON	TFRC	ENSG00000072274.13	ENST00000420415.5:ENST00000360110.9:ENST00000392396.7:ENST00000421258.1:ENST00000464011.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	93	2	3.3877100000000002	3.755735	4.12376	9.08966e-6	2.71701e-7	0.00231903	2.57429e-4
chr1	246149674	246149774	677129	0	-	0.31	(0.28,0.32]	chr1	79721	534	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000391836.3:ENST00000453676.5:ENST00000462422.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	47	2	2.67975	3.7557	4.83165	0.0252505	0.00527257	0.12011	0.0656295
chr7	74233274	74233374	3555555	0	-	0.58	(0.57,1]	chr7	330972	1	SS5_PROX	SS5_PROX:INTRON	RFC2	ENSG00000049541.11	ENST00000352131.7:ENST00000055077.8:ENST00000621097.4:ENST00000485545.5:ENST00000497430.1	protein_coding	protein_coding	protein_coding	protein_coding	3	61	2	3.56546	3.755585	3.94571	4.59736e-5	2.14398e-5	0.00552588	0.00377331
chr17	1893818	1893917	6546638	0	+	0.383838	(0.378,0.408]	chr17	635012	15	INTRON	INTRON	RPA1	ENSG00000132383.12	ENST00000254719.10:ENST00000574049.1:ENST00000573994.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	42	2	2.2259	3.755555	5.28521	0.0662381	4.52877e-4	0.181924	0.0192381
chr20	6020406	6020505	7230693	0	+	0.353535	(0.35,0.378]	chr20	734840	45	INTRON	INTRON	CRLS1	ENSG00000088766.12	ENST00000452938.5:ENST00000378863.9:ENST00000378868.4:ENST00000489345.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	69	2	1.75081	3.755555	5.7603	0.0427459	6.3427e-5	0.148082	0.00658818
chr2	97521927	97522027	1183542	0	-	0.43	(0.408,0.44]	chr2	126902	56	INTRON	INTRON	ANKRD36B	ENSG00000196912.13	ENST00000359901.9:ENST00000258459.12	protein_coding	protein_coding	protein_coding	protein_coding	2	54	2	2.05947	3.7555	5.45153	0.0333232	1.89064e-4	0.134145	0.0119565
chr7	102475680	102475780	3588481	0	-	0.53	(0.515,0.57]	chr7	334976	1	SS5_PROX	SS5_PROX:INTRON	POLR2J	ENSG00000005075.16	ENST00000292614.10	protein_coding	protein_coding	protein_coding	protein_coding	2	49	2	2.58624	3.755485	4.92473	0.00526399	0.00108255	0.0633874	0.0300133
chr7	152282419	152282518	3679746	0	-	0.282828	(0.28,0.32]	chr7	341617	82	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000684262.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	60	2	2.70831	3.75543	4.80255	0.0137406	0.00378444	0.0949306	0.0562562
chr21	14748082	14748179	7430067	0	-	0.515464	(0.515,0.57]	chr21	757871	18	EXON_LNCRNA	EXON_LNCRNA:INTRON	ENSG00000232884	ENSG00000232884.10	ENST00000673788.1:ENST00000660333.1:ENST00000660772.1:ENST00000665066.1:ENST00000670675.1:ENST00000674136.1:ENST00000658213.1:ENST00000455253.6:ENST00000654377.1:ENST00000454128.3:ENST00000655631.1:ENST00000661285.1	lncRNA	lncRNA	lncRNA	lncRNA	1	34	2	2.9114	3.7552700000000003	4.59914	0.00826019	0.00616166	0.0813266	0.0676501
chr3	31598960	31599060	1392061	0	+	0.49	(0.476,0.515]	chr3	145704	17	INTRON	INTRON	STT3B	ENSG00000163527.10	ENST00000453168.5:ENST00000295770.4:ENST00000423527.5:ENST00000462235.5:ENST00000436236.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	60	2	1.96833	3.7552149999999997	5.5421	0.0195007	3.56777e-4	0.119967	0.0175154
chr11	57304656	57304754	4952684	0	-	0.469388	(0.44,0.476]	chr11	464753	13	INTRON	INTRON	TNKS1BP1	ENSG00000149115.14	ENST00000528882.5:ENST00000358252.8:ENST00000532437.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	54	2	2.38519	3.75516	5.12513	0.012193	7.96486e-4	0.0910127	0.0258804
chr17	78223854	78223953	6682271	0	+	0.525253	(0.515,0.57]	chr17	652767	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	BIRC5	ENSG00000089685.15	ENST00000301633.8:ENST00000350051.8:ENST00000374948.6:ENST00000589892.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	150	2	3.66021	3.755095	3.84998	7.96879e-6	2.16199e-6	0.00213244	9.16812e-4
chr10	63489160	63489260	4635625	0	-	0.52	(0.515,0.57]	chr10	426242	233	INTRON	INTRON	JMJD1C	ENSG00000171988.20	ENST00000633035.1	protein_coding	processed_transcript	protein_coding	processed_transcript	1	34	2	2.74772	3.75508	4.76244	0.0142192	0.00362147	0.103638	0.0533855
chr12	26931185	26931284	5298666	0	-	0.525253	(0.515,0.57]	chr12	504041	19	INTRON	INTRON	INTS13	ENSG00000064102.15	ENST00000261191.12:ENST00000544548.5:ENST00000538727.5:ENST00000537336.1	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	2.74772	3.75508	4.76244	0.0142192	0.00362147	0.103638	0.0533855
chr12	57836471	57836571	5340052	0	-	0.52	(0.515,0.57]	chr12	511016	65	INTRON	INTRON	CTDSP2	ENSG00000175215.11	ENST00000398073.7:ENST00000548823.1:ENST00000547701.5:ENST00000551594.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	34	2	2.74772	3.75508	4.76244	0.0142192	0.00362147	0.103638	0.0533855
chr8	27441036	27441132	3720970	0	+	0.40625	(0.378,0.408]	chr8	345749	2	INTRON	INTRON	PTK2B	ENSG00000120899.18	ENST00000397501.5:ENST00000346049.10:ENST00000420218.3:ENST00000517339.5:ENST00000397497.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	38	2	2.63247	3.755045	4.87762	0.0215745	0.00553849	0.123836	0.0648867
chr16	47475959	47476059	6343448	0	+	0.46	(0.44,0.476]	chr16	608849	116	INTRON	INTRON	PHKB	ENSG00000102893.17	ENST00000566037.6:ENST00000566044.5:ENST00000299167.12:ENST00000696809.1:ENST00000323584.10:ENST00000565424.2:ENST00000567402.5:ENST00000563376.5:ENST00000564873.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	132	2	2.88768	3.7549400000000004	4.6222	5.10179e-4	1.68586e-6	0.020816	7.83961e-4
chr1	90989166	90989266	502199	0	-	0.34	(0.32,0.35]	chr1	59504	64	INTRON	INTRON	ZNF644	ENSG00000122482.22	ENST00000370440.5:ENST00000337393.10:ENST00000347275.9:ENST00000361321.5:ENST00000467231.5:ENST00000498303.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	44	2	2.51061	3.754915	4.99922	0.0364463	0.00223907	0.138959	0.0435144
chr11	75007767	75007865	4830615	0	+	0.326531	(0.32,0.35]	chr11	450730	14	UTR3	UTR3:EXON_MRNA:INTRON	NEU3	ENSG00000162139.10	ENST00000529024.1:ENST00000294064.9	protein_coding	protein_coding	protein_coding	protein_coding	1	44	2	2.51061	3.754915	4.99922	0.0364463	0.00223907	0.138959	0.0435144
chr20	5102123	5102222	7311409	0	-	0.343434	(0.32,0.35]	chr20	744438	8	INTRON	INTRON	TMEM230	ENSG00000089063.15	ENST00000615008.4:ENST00000612323.4:ENST00000202834.11:ENST00000379283.6:ENST00000379279.6:ENST00000379299.6:ENST00000379286.6:ENST00000492419.1:ENST00000379277.6:ENST00000342308.10	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	44	2	2.51061	3.754915	4.99922	0.0364463	0.00223907	0.138959	0.0435144
chr5	75704119	75704218	2644243	0	-	0.333333	(0.32,0.35]	chr5	251389	9	INTRON	INTRON	POC5	ENSG00000152359.15	ENST00000428202.7:ENST00000514838.6:ENST00000446329.6:ENST00000510798.5:ENST00000503835.5:ENST00000504862.5:ENST00000515285.5:ENST00000502826.5:ENST00000506164.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	44	2	2.51061	3.754915	4.99922	0.0364463	0.00223907	0.138959	0.0435144
chr7	119668864	119668964	3628025	0	-	0.34	(0.32,0.35]	chr7	337315	1684	INTRON	INTRON	LINC02476	ENSG00000225546.6	ENST00000660268.1	lncRNA	lncRNA	lncRNA	lncRNA	1	44	2	2.51061	3.754915	4.99922	0.0364463	0.00223907	0.138959	0.0435144
chr8	89731439	89731539	3985019	0	-	0.49	(0.476,0.515]	chr8	364998	54	INTRON	INTRON	RIPK2-DT	ENSG00000251136.10	ENST00000688654.1:ENST00000690564.1:ENST00000661105.1:ENST00000685145.1:ENST00000519655.6:ENST00000656898.2:ENST00000685787.1:ENST00000693018.1:ENST00000691313.1:ENST00000691446.1:ENST00000524190.2:ENST00000691897.1:ENST00000685988.1:ENST00000691595.1:ENST00000688855.1:ENST00000504145.6:ENST00000685619.1:ENST00000653574.1:ENST00000687824.1:ENST00000521996.2:ENST00000692782.1:ENST00000655144.2:ENST00000687204.1:ENST00000689241.1:ENST00000686009.1:ENST00000685448.1	lncRNA	lncRNA	lncRNA	lncRNA	2	53	2	2.16377	3.75483	5.34589	0.0243026	3.224e-4	0.12011	0.0159645
chr6	149791952	149792052	2996468	0	+	0.46	(0.44,0.476]	chr6	280380	15	INTRON	INTRON	PCMT1	ENSG00000120265.19	ENST00000367384.7:ENST00000367378.6:ENST00000484601.6:ENST00000367380.9:ENST00000544496.5:ENST00000649295.1:ENST00000464889.7:ENST00000486585.2:ENST00000495487.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	76	2	1.892	3.7547499999999996	5.6175	0.00935701	2.84938e-4	0.0858596	0.015495
chr16	75654697	75654797	6391218	0	+	0.38	(0.378,0.408]	chr16	614599	3	SS5_PROX	SS5_PROX:INTRON	TERF2IP	ENSG00000166848.7	ENST00000300086.5:ENST00000653858.1:ENST00000569234.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	42	2	2.90162	3.754665	4.60771	0.0113157	0.00567576	0.0886121	0.0678837
chr15	77324464	77324563	6236676	0	-	0.282828	(0.28,0.32]	chr15	595305	376	INTRON	INTRON	PEAK1	ENSG00000173517.11	ENST00000560626.6:ENST00000682557.1:ENST00000558305.5:ENST00000564328.5:ENST00000567808.5:ENST00000567337.5:ENST00000569819.5:ENST00000569159.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	60	2	1.83771	3.75464	5.67157	0.0591725	9.48957e-4	0.189982	0.0281755
chr9	92608854	92608953	4157277	0	+	0.626263	(0.57,1]	chr9	379007	80	INTRON	INTRON	CENPP	ENSG00000188312.14	ENST00000375587.8:ENST00000375579.7	protein_coding	protein_coding	protein_coding	protein_coding	2	46	2	3.69986	3.7545450000000002	3.80923	1.9698e-4	1.11529e-4	0.0122531	0.00945289
chr15	30641021	30641121	5992424	0	+	0.36	(0.35,0.378]	chr15	569734	1	SS3_PROX	SS3_PROX:INTRON	ENSG00000284906:ARHGAP11B	ENSG00000284906.3:ENSG00000285077.3	ENST00000564902.5:ENST00000428041.4:ENST00000693711.1:ENST00000685924.1:ENST00000563110.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	39	2	2.86451	3.75454	4.64457	0.012652	0.0109111	0.0926667	0.0923273
chr21	38007816	38007915	7462958	0	-	0.353535	(0.35,0.378]	chr21	760273	6	INTRON	INTRON	DSCR4:DSCR4-IT1	ENSG00000184029.9:ENSG00000223608.1	ENST00000398948.5:ENST00000417138.1	lncRNA	lncRNA	lncRNA	lncRNA	1	39	2	2.86451	3.75454	4.64457	0.012652	0.0109111	0.0926667	0.0923273
chr7	32881137	32881236	3515517	0	-	0.363636	(0.35,0.378]	chr7	327782	8	INTRON	INTRON	KBTBD2	ENSG00000170852.12	ENST00000304056.9:ENST00000485611.5:ENST00000452926.1:ENST00000453627.1:ENST00000423022.1:ENST00000424468.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	39	2	2.86451	3.75454	4.64457	0.012652	0.0109111	0.0926667	0.0923273
chr16	84608819	84608919	6533692	0	-	0.53	(0.515,0.57]	chr16	633090	182	INTRON	INTRON	COTL1	ENSG00000103187.8	ENST00000262428.5:ENST00000564057.1:ENST00000564662.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	37	2	2.23241	3.75446	5.27651	0.0581268	5.11033e-4	0.188651	0.020816
chr1	50695293	50695393	449598	0	-	0.5	(0.476,0.515]	chr1	54229	394	INTRON	INTRON	FAF1	ENSG00000185104.21	ENST00000396153.7:ENST00000494400.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	50	2	2.19809	3.754335	5.31058	0.020317	9.15544e-4	0.121522	0.0278396
chr3	150605180	150605279	1534465	0	+	0.252525	[0,0.28]	chr3	159930	11	INTRON	INTRON	SELENOT	ENSG00000198843.14	ENST00000480740.5:ENST00000477889.5:ENST00000471696.6:ENST00000492132.1:ENST00000485923.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	46	2	2.74901	3.754325	4.75964	0.0232081	0.0188843	0.118148	0.118148
chr5	139328255	139328353	2499744	0	+	0.27551	[0,0.28]	chr5	238978	16	INTRON	INTRON	MATR3	ENSG00000280987.4:ENSG00000015479.20	ENST00000509990.5:ENST00000361059.7:ENST00000394800.6:ENST00000502929.5:ENST00000504203.5:ENST00000502499.5:ENST00000510056.5:ENST00000394805.8:ENST00000503811.5:ENST00000618441.5:ENST00000505625.5:ENST00000502422.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	46	2	2.74901	3.754325	4.75964	0.0232081	0.0188843	0.118148	0.118148
chr6	111274311	111274411	2939929	0	+	0.39	(0.378,0.408]	chr6	276923	73	UTR3	UTR3:EXON_MRNA:INTRON	MFSD4B	ENSG00000173214.7	ENST00000671876.2:ENST00000672750.1:ENST00000672191.1:ENST00000671883.1:ENST00000673446.1:ENST00000444259.2:ENST00000653951.2:ENST00000673245.1:ENST00000673164.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	61	2	1.99678	3.75426	5.51174	0.0177959	5.93655e-4	0.113452	0.0225024
chr11	87178687	87178787	4844223	0	+	0.37	(0.35,0.378]	chr11	451862	209	INTRON	INTRON	TMEM135	ENSG00000166575.17	ENST00000340353.11:ENST00000305494.6:ENST00000532959.5:ENST00000525018.5	protein_coding	protein_coding	protein_coding	protein_coding	1	39	2	2.6498	3.75425	4.8587	0.0210137	0.00695662	0.122348	0.0718189
chr3	152442787	152442887	1536735	0	+	0.37	(0.35,0.378]	chr3	160023	95	INTRON	INTRON	MBNL1	ENSG00000152601.18	ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000324210.10:ENST00000493459.5:ENST00000460591.5:ENST00000545754.5:ENST00000357472.7:ENST00000324196.9:ENST00000498502.5:ENST00000463374.5:ENST00000485910.5:ENST00000465907.6:ENST00000492948.5:ENST00000485509.5:ENST00000464596.5:ENST00000478535.1:ENST00000460166.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	39	2	2.6498	3.75425	4.8587	0.0210137	0.00695662	0.122348	0.0718189
chr9	120564436	120564536	4333737	0	-	0.37	(0.35,0.378]	chr9	398155	132	INTRON	INTRON	CDK5RAP2	ENSG00000136861.19	ENST00000349780.9:ENST00000360190.8:ENST00000687279.1:ENST00000687633.1:ENST00000684780.1:ENST00000687311.1:ENST00000690814.1:ENST00000686842.1:ENST00000693714.1:ENST00000693386.1:ENST00000692746.1:ENST00000686376.1:ENST00000692155.1:ENST00000690646.1:ENST00000693433.1:ENST00000688923.1:ENST00000473282.6:ENST00000480112.5:ENST00000685866.1:ENST00000689688.1:ENST00000416449.6:ENST00000691504.1:ENST00000360822.8:ENST00000693728.1:ENST00000690474.1:ENST00000693137.1:ENST00000693702.1:ENST00000481266.2:ENST00000472883.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	39	2	2.6498	3.75425	4.8587	0.0210137	0.00695662	0.122348	0.0718189
chr6	133974419	133974519	2961970	0	+	0.54	(0.515,0.57]	chr6	278515	51	INTRON	INTRON	TBPL1	ENSG00000028839.10	ENST00000613034.4:ENST00000416965.5:ENST00000457715.1:ENST00000367871.5:ENST00000237264.9:ENST00000367869.1	protein_coding	protein_coding	protein_coding	protein_coding	2	72	2	3.62821	3.7541200000000003	3.88003	4.12866e-4	1.52864e-4	0.0181365	0.0112857
chr11	85996127	85996226	5014093	0	-	0.191919	[0,0.28]	chr11	472947	54	INTRON	INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000630913.2:ENST00000529760.5:ENST00000528398.5:ENST00000356360.9:ENST00000529016.5:ENST00000526961.5:ENST00000530542.1	protein_coding	protein_coding	protein_coding	protein_coding	1	46	2	2.5055	3.7540649999999998	5.00263	0.0359431	0.013055	0.152322	0.093385
chr3	155925366	155925466	1537689	0	+	0.44	(0.408,0.44]	chr3	160156	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	GMPS	ENSG00000163655.16	ENST00000496455.7:ENST00000295920.7	protein_coding	protein_coding	protein_coding	protein_coding	4	149	2	3.67904	3.75404	3.82904	2.07254e-5	1.66007e-5	0.00353137	0.00326835
chr22	21982286	21982374	7562023	0	-	0.681818	(0.57,1]	chr22	773555	2	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	TOP3B	ENSG00000100038.20	ENST00000357179.10:ENST00000457179.5:ENST00000444502.5:ENST00000398793.6:ENST00000424393.5:ENST00000437929.5:ENST00000430142.5:ENST00000456075.5:ENST00000449704.5:ENST00000437103.1:ENST00000434517.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	60	2	3.30588	3.753995	4.20211	1.12273e-4	9.40529e-6	0.00903968	0.00236268
chr1	1708432	1708519	361041	0	-	0.528736	(0.515,0.57]	chr1	42059	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CDK11A:ENSG00000268575	ENSG00000008128.23:ENSG00000268575.1	ENST00000404249.8:ENST00000356200.7:ENST00000598846.1:ENST00000357760.6:ENST00000358779.9:ENST00000378633.5:ENST00000460465.5:ENST00000509982.5:ENST00000378638.6:ENST00000356937.7:ENST00000492390.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA	5	74	2	1.89549	3.75399	5.61249	0.0094473	4.24748e-5	0.0817766	0.00526976
chr2	28935420	28935520	725599	0	+	0.28	[0,0.28]	chr2	83856	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	WDR43	ENSG00000163811.12	ENST00000407426.8:ENST00000466067.1:ENST00000446643.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	63	2	2.45042	3.7539499999999997	5.05748	0.0113653	0.010819	0.0920575	0.0886611
chr9	91848576	91848676	4284248	0	-	0.47	(0.44,0.476]	chr9	393909	724	INTRON	INTRON	ROR2	ENSG00000169071.15	ENST00000375715.5:ENST00000375708.4:ENST00000550066.5:ENST00000495386.5:ENST00000546883.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	52	2	1.93084	3.753695	5.57655	0.0443175	3.3967e-4	0.162302	0.0170719
chr7	92400506	92400604	3354364	0	+	0.336735	(0.32,0.35]	chr7	312609	17	UTR3	UTR3:EXON_MRNA	ANKIB1	ENSG00000001629.10	ENST00000265742.8	protein_coding	protein_coding	protein_coding	protein_coding	1	41	2	2.96746	3.75367	4.53988	0.0202178	0.00815799	0.109913	0.0810802
chr10	49035620	49035720	4612895	0	-	0.45	(0.44,0.476]	chr10	424892	155	INTRON	INTRON	VSTM4	ENSG00000165633.13	ENST00000332853.9	protein_coding	protein_coding	protein_coding	protein_coding	1	40	2	2.38219	3.75366	5.12513	0.045456	7.96486e-4	0.149888	0.0258804
chr6	147947819	147947919	2993478	0	+	0.33	(0.32,0.35]	chr6	280182	3	SS5_PROX	SS5_PROX:INTRON	ENSG00000227681	ENSG00000227681.5	ENST00000427015.1	lncRNA	lncRNA	lncRNA	lncRNA	1	44	2	2.4458	3.7535950000000002	5.06139	0.0425977	0.00179023	0.148082	0.0392749
chr1	39848197	39848297	427911	0	-	0.29	(0.28,0.32]	chr1	51993	1	SS3_PROX	SS3_PROX:INTRON	TRIT1	ENSG00000043514.17	ENST00000316891.10:ENST00000648678.1:ENST00000537440.5:ENST00000372818.5:ENST00000462797.5:ENST00000441669.6:ENST00000495175.6:ENST00000491865.5:ENST00000541099.5:ENST00000492612.6:ENST00000489945.5:ENST00000486825.6:ENST00000469476.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	43	2	2.91832	3.7535350000000003	4.58875	0.0230574	0.0102484	0.118056	0.089002
chr14	30974595	30974695	5857355	0	-	0.31	(0.28,0.32]	chr14	556508	102	INTRON	INTRON	STRN3	ENSG00000196792.12	ENST00000355683.9:ENST00000357479.10:ENST00000555358.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	43	2	2.91832	3.7535350000000003	4.58875	0.0230574	0.0102484	0.118056	0.089002
chr14	63537928	63538028	5907851	0	-	0.3	(0.28,0.32]	chr14	561136	298	INTRON	INTRON	PPP2R5E	ENSG00000154001.14	ENST00000337537.8:ENST00000555899.1:ENST00000553266.5:ENST00000556878.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	43	2	2.91832	3.7535350000000003	4.58875	0.0230574	0.0102484	0.118056	0.089002
chr18	26074207	26074306	6959563	0	-	0.292929	(0.28,0.32]	chr18	688461	53	INTRON	INTRON	SS18	ENSG00000141380.14	ENST00000415083.7:ENST00000542420.6:ENST00000579640.5:ENST00000269138.9:ENST00000269137.11:ENST00000585121.5:ENST00000539244.6:ENST00000585241.5:ENST00000578954.5:ENST00000579061.5:ENST00000577636.5:ENST00000584083.5:ENST00000578700.5:ENST00000582792.5:ENST00000581021.5:ENST00000577572.5:ENST00000582448.5:ENST00000581570.5:ENST00000577751.5:ENST00000580003.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	43	2	2.91832	3.7535350000000003	4.58875	0.0230574	0.0102484	0.118056	0.089002
chr2	9501183	9501282	1063921	0	-	0.292929	(0.28,0.32]	chr2	113472	21	EXON_MRNA	EXON_MRNA:INTRON	ADAM17	ENSG00000151694.14	ENST00000310823.8:ENST00000648548.1:ENST00000649227.1:ENST00000648857.1:ENST00000647979.1:ENST00000647610.1:ENST00000650116.1:ENST00000649686.1:ENST00000649068.1:ENST00000647622.1:ENST00000649972.1:ENST00000650241.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	43	2	2.91832	3.7535350000000003	4.58875	0.0230574	0.0102484	0.118056	0.089002
chr3	149053919	149054017	1840663	0	-	0.316327	(0.28,0.32]	chr3	185131	14	INTRON	INTRON	HLTF	ENSG00000071794.16	ENST00000310053.10:ENST00000465259.5:ENST00000392912.6:ENST00000494055.5:ENST00000493881.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	43	2	2.91832	3.7535350000000003	4.58875	0.0230574	0.0102484	0.118056	0.089002
chr5	145661605	145661705	2744897	0	-	0.33	(0.32,0.35]	chr5	258670	1879	INTRON	INTRON	PRELID2	ENSG00000186314.12	ENST00000510259.5	protein_coding	processed_transcript	protein_coding	processed_transcript	1	44	2	2.57263	3.75344	4.93425	0.0312297	0.00281048	0.13151	0.0488779
chr3	172169055	172169154	1560845	0	+	0.444444	(0.44,0.476]	chr3	161551	201	INTRON	INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000421757.5:ENST00000469491.5:ENST00000336824.8:ENST00000423424.5:ENST00000416957.5:ENST00000478016.1:ENST00000443501.1:ENST00000476794.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	41	2	2.20949	3.75336	5.29723	0.0672585	3.83422e-4	0.183051	0.017699199999999998
chr6	156985943	156986043	3009252	0	+	0.36	(0.35,0.378]	chr6	281130	4	INTRON	INTRON	ARID1B	ENSG00000049618.24	ENST00000346085.10:ENST00000636930.2:ENST00000647938.1:ENST00000350026.10:ENST00000674298.1:ENST00000674190.1:ENST00000414678.7:ENST00000319584.11:ENST00000452544.2:ENST00000637887.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	43	2	2.83709	3.75319	4.66929	0.01435	0.00541617	0.0966737	0.066545000000000007
chr6	83031741	83031841	3145188	0	-	0.58	(0.57,1]	chr6	293188	1	SS5_PROX	SS5_PROX:INTRON	UBE3D	ENSG00000118420.17	ENST00000369747.8:ENST00000237186.10:ENST00000509102.5:ENST00000430071.6:ENST00000369746.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	34	2	2.17026	3.75317	5.33608	0.0220522	3.92497e-5	0.123836	0.00533644
chr3	42044811	42044911	1403970	0	+	0.33	(0.32,0.35]	chr3	147497	303	INTRON	INTRON	TRAK1	ENSG00000182606.17	ENST00000487159.5:ENST00000672026.1:ENST00000673621.2	protein_coding	protein_coding	protein_coding	protein_coding	1	43	2	3.23331	3.7531549999999996	4.273	0.0368357	0.00315414	0.138959	0.0515261
chr6	152869410	152869509	3249478	0	-	0.444444	(0.44,0.476]	chr6	301922	371	INTRON	INTRON	LINC02840	ENSG00000224893.7	ENST00000666093.1:ENST00000656248.1:ENST00000657202.1:ENST00000659837.1:ENST00000654424.1:ENST00000670414.1:ENST00000671138.1:ENST00000658966.1:ENST00000667732.1:ENST00000652681.1	lncRNA	lncRNA	lncRNA	lncRNA	1	40	2	2.80275	3.7531499999999998	4.70355	0.0146513	0.00383786	0.0982604	0.0562562
chr1	112633767	112633867	186468	0	+	0.34	(0.32,0.35]	chr1	20636	135	INTRON	INTRON	CAPZA1	ENSG00000116489.13	ENST00000485542.5:ENST00000476936.5:ENST00000263168.4:ENST00000498626.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	41	2	2.48693	3.75305	5.01917	0.0338094	0.0055659	0.146709	0.0648867
chr19	18519220	18519320	7152986	0	-	0.33	(0.32,0.35]	chr19	722886	434	INTRON	INTRON	ELL	ENSG00000105656.13	ENST00000262809.9:ENST00000594635.6:ENST00000596915.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	41	2	2.48693	3.75305	5.01917	0.0338094	0.0055659	0.146709	0.0648867
chr8	127893185	127893284	3861043	0	+	0.323232	(0.32,0.35]	chr8	355436	6	INTRON	INTRON	PVT1	ENSG00000249859.13	ENST00000667305.1:ENST00000690350.1:ENST00000653522.1:ENST00000664214.1:ENST00000664139.1:ENST00000661830.1:ENST00000657289.1:ENST00000504719.7:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000656880.1:ENST00000660200.1:ENST00000669132.1:ENST00000657211.1:ENST00000653845.1:ENST00000517525.2:ENST00000665856.1:ENST00000651587.1:ENST00000692980.1:ENST00000666353.1:ENST00000657183.1:ENST00000654324.1:ENST00000658556.1:ENST00000657693.1:ENST00000666080.1:ENST00000667539.1:ENST00000521951.1:ENST00000524165.6:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000664293.1:ENST00000657297.1:ENST00000662410.1:ENST00000670795.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000654091.1:ENST00000523328.6:ENST00000657356.1:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000662061.1:ENST00000667204.1:ENST00000656491.1:ENST00000667714.1:ENST00000654105.1:ENST00000665721.1:ENST00000518528.2:ENST00000669416.1:ENST00000660438.1:ENST00000661160.1:ENST00000659326.1:ENST00000665246.1:ENST00000657384.1:ENST00000666842.1:ENST00000517790.2:ENST00000522963.6:ENST00000654369.1:ENST00000661625.1:ENST00000657596.1:ENST00000664995.1:ENST00000656532.1:ENST00000661988.1:ENST00000670714.1:ENST00000669951.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000656693.1:ENST00000668123.1:ENST00000666776.1:ENST00000664299.1:ENST00000669272.1:ENST00000659912.1:ENST00000670532.1:ENST00000660896.1:ENST00000667149.1:ENST00000656396.1:ENST00000523068.2:ENST00000521122.2:ENST00000520913.2:ENST00000519481.6:ENST00000651568.1:ENST00000669082.1:ENST00000665166.1:ENST00000656948.1:ENST00000671088.1:ENST00000664924.1:ENST00000670204.1:ENST00000652695.1:ENST00000670602.1:ENST00000651664.1:ENST00000517838.6:ENST00000663461.1:ENST00000513868.6:ENST00000670626.1:ENST00000653406.1	lncRNA	lncRNA	lncRNA	lncRNA	1	41	2	2.48693	3.75305	5.01917	0.0338094	0.0055659	0.146709	0.0648867
chr6	127267395	127267495	2958370	0	+	0.61	(0.57,1]	chr6	278139	3	SS5_PROX	SS5_PROX:INTRON	RNF146	ENSG00000118518.17	ENST00000476956.5:ENST00000609447.5:ENST00000356799.6:ENST00000495188.2:ENST00000368314.6:ENST00000477776.5:ENST00000609944.5:ENST00000608991.5:ENST00000610153.1:ENST00000489534.5:ENST00000610162.5:ENST00000608340.5:ENST00000480444.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	80	2	3.50161	3.753	4.00439	3.17447e-5	8.29998e-7	0.00449886	5.58079e-4
chr1	193075219	193075319	284421	0	+	0.31	(0.28,0.32]	chr1	32687	42	INTRON	INTRON	RO60	ENSG00000116747.13	ENST00000432079.5:ENST00000400968.7:ENST00000415442.2:ENST00000460715.2:ENST00000367446.7:ENST00000367443.5:ENST00000367444.7:ENST00000367445.7:ENST00000367441.1:ENST00000512587.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	43	2	2.46018	3.752985	5.04579	0.0375904	0.00714672	0.156054	0.0723634
chr12	24868935	24869035	5297103	0	-	0.3	(0.28,0.32]	chr12	503853	186	INTRON	INTRON	BCAT1	ENSG00000060982.15	ENST00000261192.12:ENST00000538118.5:ENST00000342945.9:ENST00000539282.5:ENST00000539780.5:ENST00000544418.1:ENST00000612790.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:processed_transcript	1	43	2	2.46018	3.752985	5.04579	0.0375904	0.00714672	0.156054	0.0723634
chr14	68887572	68887671	5914131	0	-	0.313131	(0.28,0.32]	chr14	561871	21	EXON_MRNA	EXON_MRNA:INTRON	ACTN1	ENSG00000072110.16	ENST00000394419.9:ENST00000684638.1:ENST00000683780.1:ENST00000683198.1:ENST00000684639.1:ENST00000682522.1:ENST00000684287.1:ENST00000682378.1:ENST00000684598.1:ENST00000684146.1:ENST00000682130.1:ENST00000683267.1:ENST00000683069.1:ENST00000682381.1:ENST00000682298.1:ENST00000684340.1:ENST00000682331.1:ENST00000682291.1:ENST00000683225.1:ENST00000684182.1:ENST00000193403.10:ENST00000556083.1:ENST00000684713.1:ENST00000438964.6:ENST00000679147.1:ENST00000376839.7:ENST00000682559.1:ENST00000538545.6:ENST00000683342.1:ENST00000544964.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	43	2	2.46018	3.752985	5.04579	0.0375904	0.00714672	0.156054	0.0723634
chr7	67295117	67295199	3541791	0	-	0.304878	(0.28,0.32]	chr7	330387	1	SS5_PROX	SS5_PROX:INTRON	PMS2P4	ENSG00000067601.9	ENST00000685171.1:ENST00000688358.1:ENST00000692496.1:ENST00000685583.1:ENST00000688710.1:ENST00000684859.1:ENST00000685318.1:ENST00000691713.1:ENST00000686389.1:ENST00000690253.1:ENST00000688815.1:ENST00000692171.1:ENST00000692360.1:ENST00000689281.1:ENST00000690241.1:ENST00000689629.1:ENST00000689043.1:ENST00000688809.1:ENST00000687432.1:ENST00000687680.1:ENST00000686900.1:ENST00000691782.1:ENST00000693356.1:ENST00000691384.1:ENST00000690440.1:ENST00000686719.1:ENST00000686561.1:ENST00000688238.1:ENST00000687826.1:ENST00000689908.1:ENST00000689385.1:ENST00000689855.1:ENST00000691806.1:ENST00000689028.1:ENST00000688599.1:ENST00000690886.1:ENST00000688434.1:ENST00000689554.1:ENST00000414507.3:ENST00000685978.1:ENST00000689774.1:ENST00000693761.1:ENST00000690639.1:ENST00000688728.1:ENST00000689653.1:ENST00000693083.1:ENST00000691005.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	1	43	2	2.46018	3.752985	5.04579	0.0375904	0.00714672	0.156054	0.0723634
chr9	131143280	131143380	4215805	0	+	0.34	(0.32,0.35]	chr9	386555	4	INTRON	INTRON	NUP214	ENSG00000126883.19	ENST00000695497.1:ENST00000695498.1:ENST00000695496.1:ENST00000695495.1:ENST00000695494.1:ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000525561.2:ENST00000651022.1:ENST00000695499.1:ENST00000530863.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	27	818	2	2.9008	3.752975	4.60515	8.36651e-7	3.7275e-9	5.18092e-4	1.39754e-5
chr19	32609966	32610066	7168942	0	-	0.47	(0.44,0.476]	chr19	724362	16	INTRON	INTRON	ANKRD27	ENSG00000105186.16	ENST00000306065.9	protein_coding	protein_coding	protein_coding	protein_coding	2	82	2	3.74925	3.752665	3.75608	4.08974e-4	2.6487e-4	0.0185763	0.0144071
chr9	19237023	19237123	4104909	0	+	0.55	(0.515,0.57]	chr9	373894	58	INTRON	INTRON	DENND4C	ENSG00000137145.21	ENST00000602925.5:ENST00000434457.7:ENST00000602708.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	35	2	3.19178	3.7525199999999996	4.31326	0.0141817	0.00289534	0.0959618	0.0494641
chr2	144468325	144468425	1241285	0	-	0.26	[0,0.28]	chr2	131716	36	INTRON	INTRON	ZEB2	ENSG00000169554.23	ENST00000636471.1:ENST00000627532.3:ENST00000638128.1:ENST00000637304.1:ENST00000636179.1:ENST00000636820.1:ENST00000419938.5:ENST00000409487.7:ENST00000636732.2:ENST00000636026.2:ENST00000675069.1:ENST00000689298.1:ENST00000539609.7:ENST00000558170.6:ENST00000303660.8:ENST00000427902.5:ENST00000637267.2:ENST00000392861.6:ENST00000431672.4:ENST00000409211.5:ENST00000465308.5:ENST00000434448.5:ENST00000472146.5:ENST00000461784.3:ENST00000476394.5:ENST00000637591.2:ENST00000479735.1:ENST00000453352.5:ENST00000435831.5:ENST00000444559.5:ENST00000630572.2:ENST00000484313.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	62	2	2.20073	3.752485	5.30424	0.0235708	0.00584781	0.128907	0.0667594
chr1	39571805	39571892	427744	0	-	0.45977	(0.44,0.476]	chr1	51944	1	SS3_PROX	SS3_PROX:INTRON	PABPC4	ENSG00000090621.15	ENST00000677006.1:ENST00000372858.8:ENST00000372856.7:ENST00000372857.7:ENST00000372862.7:ENST00000676523.1:ENST00000677548.1:ENST00000678980.1:ENST00000677244.1:ENST00000677609.1:ENST00000679246.1:ENST00000678287.1:ENST00000678625.1:ENST00000470443.6:ENST00000421687.6:ENST00000677644.1:ENST00000474378.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	41	2	2.97451	3.7524249999999997	4.53034	0.00853825	0.00672609	0.0780043	0.0738715
chr22	29293686	29293783	7496327	0	+	0.474227	(0.44,0.476]	chr22	764849	7	INTRON	INTRON	EWSR1	ENSG00000182944.18	ENST00000629659.2:ENST00000332050.10:ENST00000397938.7:ENST00000406548.5:ENST00000331029.11:ENST00000414183.6:ENST00000332035.10:ENST00000479135.5:ENST00000469669.5:ENST00000483629.5:ENST00000360091.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	37	2	2.81896	3.7523	4.68564	0.0120766	0.00816201	0.0962311	0.0766625
chr3	47771418	47771518	1684972	0	-	0.46	(0.44,0.476]	chr3	172116	251	INTRON	INTRON	SMARCC1	ENSG00000173473.11	ENST00000254480.10:ENST00000425518.5:ENST00000454240.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	37	2	2.81896	3.7523	4.68564	0.0120766	0.00816201	0.0962311	0.0766625
chr6	73469147	73469244	2904153	0	+	0.463918	(0.44,0.476]	chr6	274350	22	INTRON	INTRON	MTO1	ENSG00000135297.17	ENST00000415954.6:ENST00000681094.1:ENST00000680289.1:ENST00000680775.1:ENST00000680609.1:ENST00000681212.1:ENST00000679627.1:ENST00000679675.1:ENST00000680350.1:ENST00000681610.1:ENST00000681294.1:ENST00000680686.1:ENST00000681509.1:ENST00000680570.1:ENST00000680131.1:ENST00000681284.1:ENST00000681890.1:ENST00000680266.1:ENST00000680875.1:ENST00000679905.1:ENST00000681620.1:ENST00000681204.1:ENST00000681705.1:ENST00000681691.1:ENST00000679612.1:ENST00000681141.1:ENST00000498286.6:ENST00000681254.1:ENST00000681624.1:ENST00000679418.1:ENST00000681579.1:ENST00000681267.1:ENST00000680902.1:ENST00000680238.1:ENST00000681165.1:ENST00000679364.1:ENST00000679411.1:ENST00000679604.1:ENST00000679900.1:ENST00000680601.1:ENST00000487960.2:ENST00000521156.6:ENST00000445187.6:ENST00000521032.6:ENST00000485082.2:ENST00000680034.1:ENST00000442897.7:ENST00000679808.1:ENST00000679993.1:ENST00000522205.6:ENST00000680544.1:ENST00000370305.5:ENST00000680428.1:ENST00000679352.1:ENST00000679524.1:ENST00000681932.1:ENST00000680195.1:ENST00000681438.1:ENST00000679730.1:ENST00000681337.1:ENST00000679947.1:ENST00000680405.1:ENST00000680794.1:ENST00000679870.1:ENST00000524046.2:ENST00000679592.1:ENST00000370300.8:ENST00000370308.8:ENST00000415228.5:ENST00000462039.5:ENST00000680758.1:ENST00000523763.2:ENST00000679591.1:ENST00000680841.1:ENST00000680563.1:ENST00000518210.5:ENST00000681500.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	37	2	2.81896	3.7523	4.68564	0.0120766	0.00816201	0.0962311	0.0766625
chr7	77853535	77853635	3344500	0	+	0.46	(0.44,0.476]	chr7	311490	129	INTRON	INTRON	PHTF2	ENSG00000006576.17	ENST00000422959.7:ENST00000416283.6:ENST00000307305.12:ENST00000424760.5:ENST00000415251.6:ENST00000275575.11:ENST00000450574.5:ENST00000248550.7	protein_coding	protein_coding	protein_coding	protein_coding	1	37	2	2.81896	3.7523	4.68564	0.0120766	0.00816201	0.0962311	0.0766625
chr5	43621209	43621308	2351104	0	+	0.272727	[0,0.28]	chr5	226813	17	INTRON	INTRON	NNT	ENSG00000112992.18	ENST00000264663.9:ENST00000652986.1:ENST00000670904.1:ENST00000653251.1:ENST00000660752.1:ENST00000654405.1:ENST00000344920.9:ENST00000657973.1:ENST00000654931.1:ENST00000657172.1:ENST00000512996.6:ENST00000658729.1:ENST00000660676.1:ENST00000671668.1:ENST00000662525.1:ENST00000669601.1:ENST00000656666.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	158	2	2.98683	3.7522399999999996	4.51765	0.00234564	1.24168e-5	0.0434875	0.00262819
chr16	2253212	2253310	6431540	0	-	0.27551	[0,0.28]	chr16	618778	2	UTR3	UTR3:EXON_MRNA	RNPS1	ENSG00000205937.12	ENST00000397086.6:ENST00000566458.5:ENST00000320225.10:ENST00000562205.1:ENST00000566397.5:ENST00000565678.5:ENST00000561718.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	215	2	3.12266	3.75221	4.38176	7.95891e-5	7.19261e-5	0.00762879	0.00742553
chr13	27094310	27094409	5565789	0	-	0.474747	(0.44,0.476]	chr13	532014	38	INTRON	INTRON	USP12	ENSG00000152484.14	ENST00000282344.11:ENST00000612674.1	protein_coding	protein_coding	protein_coding	protein_coding	1	37	2	2.74372	3.7522	4.76068	0.0153007	0.00653414	0.108569	0.0699952
chr6	129702932	129703032	3218737	0	-	0.46	(0.44,0.476]	chr6	299131	606	INTRON	INTRON	ARHGAP18	ENSG00000146376.11	ENST00000368149.3	protein_coding	protein_coding	protein_coding	protein_coding	1	37	2	2.74372	3.7522	4.76068	0.0153007	0.00653414	0.108569	0.0699952
chr7	66956010	66956108	3326588	0	+	0.244898	[0,0.28]	chr7	309376	6	UTR3	UTR3:EXON_MRNA	TMEM248	ENSG00000106609.16	ENST00000341567.8:ENST00000433271.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	116	2	3.44766	3.75218	4.0567	0.00294011	1.31789e-4	0.0483547	0.00990153
chr14	101968535	101968635	5820260	0	+	0.42	(0.408,0.44]	chr14	551975	32	INTRON	INTRON	DYNC1H1	ENSG00000197102.14	ENST00000360184.10:ENST00000684561.1:ENST00000680313.1:ENST00000679720.1:ENST00000680715.1:ENST00000681283.1:ENST00000681822.1:ENST00000679910.1:ENST00000681574.1:ENST00000645039.2:ENST00000645149.2:ENST00000680200.1:ENST00000680120.1:ENST00000644881.2:ENST00000681066.1:ENST00000680423.1:ENST00000681536.1:ENST00000679486.1:ENST00000681010.1:ENST00000679629.1:ENST00000681123.1:ENST00000680874.1:ENST00000680137.1:ENST00000643508.2:ENST00000680808.1:ENST00000681311.1:ENST00000681859.1:ENST00000643684.1:ENST00000643958.2:ENST00000680001.1:ENST00000681668.1:ENST00000645114.2:ENST00000681751.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	76	2	1.66945	3.7520350000000002	5.83462	0.0218479	1.18776e-4	0.123836	0.00987467
chr3	5147846	5147946	1353831	0	+	0.42	(0.408,0.44]	chr3	142361	189	INTRON	INTRON	ARL8B	ENSG00000134108.14	ENST00000429403.5:ENST00000256496.8:ENST00000455168.5:ENST00000444332.1:ENST00000419534.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	52	2	2.82511	3.7520249999999997	4.67894	0.0087648	0.00189528	0.0788605	0.0402736
chr12	111439783	111439882	5227928	0	+	0.585859	(0.57,1]	chr12	495500	44	INTRON	INTRON	SH2B3	ENSG00000111252.11	ENST00000341259.7:ENST00000550925.2:ENST00000538307.1	protein_coding	protein_coding	protein_coding	protein_coding	1	25	2	3.13254	3.75195	4.37136	0.00345135	0.00310655	0.0517761	0.0512344
chr5	179767041	179767141	2561386	0	+	0.33	(0.32,0.35]	chr5	244970	3	SS5_PROX	SS5_PROX:INTRON	MAML1	ENSG00000161021.13	ENST00000292599.4	protein_coding	protein_coding	protein_coding	protein_coding	2	55	2	2.54408	3.751895	4.95971	0.00663522	0.00659077	0.0737338	0.0703181
chr8	102280967	102281040	4011387	0	-	0.328767	(0.32,0.35]	chr8	367044	1	SS5_PROX	SS5_PROX:INTRON	UBR5	ENSG00000104517.13	ENST00000520539.6:ENST00000220959.8:ENST00000521922.5	protein_coding	protein_coding	protein_coding	protein_coding	2	55	2	2.54408	3.751895	4.95971	0.00663522	0.00659077	0.0737338	0.0703181
chr7	127928486	127928586	3405183	0	+	0.31	(0.28,0.32]	chr7	318166	3	SS5_PROX	SS5_PROX:INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000465900.5:ENST00000486037.1:ENST00000484767.5:ENST00000492840.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	44	2	3.07744	3.7518700000000003	4.4263	0.0330296	0.00604536	0.133816	0.0700813
chr7	132958426	132958526	3644647	0	-	0.27	[0,0.28]	chr7	338848	711	INTRON	INTRON	CHCHD3	ENSG00000106554.13	ENST00000262570.10:ENST00000448878.6:ENST00000496427.5:ENST00000423635.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	62	2	2.24546	3.751805	5.25815	0.0206502	0.0066548	0.122348	0.0703807
chr21	37427671	37427770	7406836	0	+	0.323232	(0.32,0.35]	chr21	754879	15	INTRON	INTRON	DYRK1A	ENSG00000157540.22	ENST00000646523.1:ENST00000647425.1:ENST00000647188.2:ENST00000647504.1:ENST00000644942.1:ENST00000338785.8:ENST00000643624.1:ENST00000643551.1:ENST00000426672.6:ENST00000398960.7:ENST00000646548.1:ENST00000645424.1:ENST00000643854.1:ENST00000455097.6:ENST00000642309.1:ENST00000645774.1:ENST00000398956.2	protein_coding	protein_coding	protein_coding	protein_coding	4	75	2	1.95408	3.75176	5.54944	0.0124054	9.42646e-4	0.0973643	0.0280811
chr10	87304502	87304602	4661003	0	-	0.24	[0,0.28]	chr10	429450	116	INTRON	INTRON	NUTM2A-AS1	ENSG00000223482.9	ENST00000692417.1:ENST00000688214.1:ENST00000659257.1:ENST00000671543.1:ENST00000451940.6:ENST00000687947.1:ENST00000663644.1:ENST00000684884.1:ENST00000664664.1:ENST00000446751.6:ENST00000456104.5:ENST00000433530.7:ENST00000688257.1:ENST00000433920.5:ENST00000687925.1:ENST00000666515.2:ENST00000688926.1:ENST00000447424.6:ENST00000690598.1:ENST00000663113.1:ENST00000667520.2:ENST00000693252.1:ENST00000687827.1:ENST00000687141.1:ENST00000654503.2:ENST00000420424.1:ENST00000655272.2:ENST00000668676.1:ENST00000653080.1:ENST00000690287.1:ENST00000413722.6:ENST00000653238.1	lncRNA	lncRNA	lncRNA	lncRNA	1	47	2	2.95729	3.751695	4.5461	0.0365918	0.0101824	0.138959	0.089002
chr15	77346631	77346730	6236898	0	-	0.242424	[0,0.28]	chr15	595309	1	INTRON	INTRON	PEAK1	ENSG00000173517.11	ENST00000560626.6:ENST00000682557.1:ENST00000558305.5:ENST00000564328.5:ENST00000567808.5:ENST00000567337.5:ENST00000569159.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	47	2	2.95729	3.751695	4.5461	0.0365918	0.0101824	0.138959	0.089002
chr2	161338334	161338434	901411	0	+	0.27	[0,0.28]	chr2	99704	191	INTRON	INTRON	PSMD14	ENSG00000115233.12	ENST00000409682.8:ENST00000437630.1	protein_coding	protein_coding	protein_coding	protein_coding	1	47	2	2.95729	3.751695	4.5461	0.0365918	0.0101824	0.138959	0.089002
chr4	39917117	39917188	2131591	0	-	0.366197	(0.35,0.378]	chr4	210209	2	CDS	CDS:EXON_MRNA:INTRON	PDS5A	ENSG00000121892.15	ENST00000303538.13:ENST00000503396.5:ENST00000513798.1	protein_coding	protein_coding	protein_coding	protein_coding	7	94	2	1.60373	3.75166	5.89959	0.016652900000000002	1.52893e-4	0.110511	0.0112857
chr2	71367388	71367486	807376	0	+	0.418367	(0.408,0.44]	chr2	90181	13	INTRON	INTRON	ZNF638	ENSG00000075292.19	ENST00000410075.5:ENST00000409544.5:ENST00000264447.9:ENST00000601581.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	40	2	2.43988	3.7516550000000004	5.06343	0.0398236	0.00101725	0.143072	0.0293497
chr20	37206872	37206972	7266415	0	+	0.42	(0.408,0.44]	chr20	738422	2	SS3_PROX	SS3_PROX:INTRON	RPN2	ENSG00000118705.17	ENST00000456102.5:ENST00000373622.9:ENST00000373632.8:ENST00000237530.11:ENST00000462163.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	40	2	2.43988	3.7516550000000004	5.06343	0.0398236	0.00101725	0.143072	0.0293497
chr4	87021103	87021203	1994659	0	+	0.41	(0.408,0.44]	chr4	199041	133	INTRON	INTRON	AFF1	ENSG00000172493.23	ENST00000504956.5:ENST00000395146.9:ENST00000507468.5:ENST00000674009.1:ENST00000503477.5:ENST00000511442.1:ENST00000544085.6:ENST00000307808.10:ENST00000511722.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	40	2	2.43988	3.7516550000000004	5.06343	0.0398236	0.00101725	0.143072	0.0293497
chr1	149807435	149807533	549363	0	-	0.602041	(0.57,1]	chr1	64486	15	INTRON	INTRON	H2BC18	ENSG00000203814.7	ENST00000545683.1:ENST00000420462.1:ENST00000469483.1:ENST00000620458.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	25	2	2.79889	3.75158	4.70427	0.0110274	9.25341e-4	0.0927187	0.0278396
chr1	168056227	168056327	249706	0	+	0.58	(0.57,1]	chr1	29648	49	INTRON	INTRON	DCAF6	ENSG00000143164.16	ENST00000432587.6:ENST00000367843.7:ENST00000367840.4:ENST00000312263.10:ENST00000489398.1:ENST00000478668.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	25	2	2.79889	3.75158	4.70427	0.0110274	9.25341e-4	0.0927187	0.0278396
chr16	84088635	84088732	6531914	0	-	0.597938	(0.57,1]	chr16	632892	8	INTRON	INTRON	MBTPS1	ENSG00000140943.18	ENST00000343411.8:ENST00000569770.5:ENST00000563231.5:ENST00000565863.1:ENST00000570012.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	25	2	2.79889	3.75158	4.70427	0.0110274	9.25341e-4	0.0927187	0.0278396
chr1	29020037	29020137	60019	0	+	0.31	(0.28,0.32]	chr1	7667	12	INTRON	INTRON	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000647918.1:ENST00000646800.1:ENST00000644342.1:ENST00000646189.1:ENST00000482464.6:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000646260.1:ENST00000373798.5:ENST00000644600.1:ENST00000649674.1:ENST00000643173.1:ENST00000343067.9:ENST00000644780.1:ENST00000650265.1:ENST00000648181.1:ENST00000643604.1:ENST00000648891.1:ENST00000373797.2:ENST00000349460.9:ENST00000645184.1:ENST00000645111.1:ENST00000643302.1:ENST00000645999.1:ENST00000642643.1:ENST00000636666.1:ENST00000644848.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	58	2	2.51426	3.75149	4.98872	0.00838468	0.00781326	0.0788246	0.0774402
chr12	64615646	64615746	5155049	0	+	0.41	(0.408,0.44]	chr12	488093	41	INTRON	INTRON	RASSF3	ENSG00000153179.13	ENST00000637125.1:ENST00000542104.6:ENST00000283172.8:ENST00000336061.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	40	2	2.71911	3.751295	4.78348	0.0189489	0.00290352	0.108861	0.0494641
chr1	16637467	16637567	383755	0	-	0.45	(0.44,0.476]	chr1	45226	19	INTRON	INTRON	CROCCP2	ENSG00000215908.10	ENST00000639456.1:ENST00000412962.4:ENST00000635081.1:ENST00000362058.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	4	68	2	1.96805	3.75122	5.53439	0.0109533	4.05863e-4	0.0925675	0.0185763
chr1	45909787	45909887	94876	0	+	0.58	(0.57,1]	chr1	12702	270	INTRON	INTRON	MAST2	ENSG00000086015.23	ENST00000470809.1:ENST00000361297.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	71	2	3.09993	3.7512049999999997	4.40248	6.63721e-5	2.27325e-6	0.00675077	0.00104829
chr2	229903825	229903924	1341482	0	-	0.373737	(0.35,0.378]	chr2	140462	26	INTRON	INTRON	TRIP12	ENSG00000153827.14	ENST00000675453.1:ENST00000675903.1:ENST00000283943.9:ENST00000675423.1:ENST00000389044.8:ENST00000389045.7:ENST00000479037.5:ENST00000409677.5:ENST00000435716.5:ENST00000428959.5:ENST00000430954.5:ENST00000343290.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	42	2	2.53856	3.7509300000000003	4.9633	0.0326077	0.00198929	0.133687	0.0411469
chrX	111710982	111711078	7702319	0	+	0.28125	(0.28,0.32]	chrX	788233	16	INTRON	INTRON	ALG13	ENSG00000101901.12	ENST00000487141.5:ENST00000394780.8:ENST00000251943.8:ENST00000610588.4:ENST00000621367.4:ENST00000622997.3:ENST00000624161.3:ENST00000636363.1:ENST00000624881.3:ENST00000495283.5:ENST00000623144.3:ENST00000470971.5:ENST00000623148.3:ENST00000436609.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	44	2	2.29724	3.75092	5.2046	0.0554156	0.00448664	0.18407	0.0593175
chr18	70191513	70191611	6987325	0	-	0.377551	(0.35,0.378]	chr18	691621	4	INTRON	INTRON	RTTN	ENSG00000176225.15	ENST00000640769.2:ENST00000255674.11:ENST00000583043.5:ENST00000581161.5:ENST00000638251.1:ENST00000640376.1:ENST00000581583.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	40	2	3.10863	3.75083	4.39303	0.0237246	0.00470896	0.118716	0.0631419
chr2	44349602	44349700	1110989	0	-	0.367347	(0.35,0.378]	chr2	119230	19	INTRON	INTRON	PREPL	ENSG00000138078.16	ENST00000425263.5:ENST00000409411.6:ENST00000426481.5:ENST00000541738.5:ENST00000409957.5:ENST00000409936.5:ENST00000409272.5:ENST00000260648.10:ENST00000410081.5:ENST00000378520.7:ENST00000378511.7:ENST00000540817.1:ENST00000438314.1:ENST00000477410.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	40	2	3.10863	3.75083	4.39303	0.0237246	0.00470896	0.118716	0.0631419
chr5	81285086	81285186	2662754	0	-	0.36	(0.35,0.378]	chr5	252321	339	INTRON	INTRON	CKMT2-AS1	ENSG00000247572.9	ENST00000663674.1:ENST00000503483.6:ENST00000511495.1:ENST00000512287.1:ENST00000502041.3:ENST00000690798.1:ENST00000670957.1:ENST00000660242.1:ENST00000500148.6:ENST00000669977.1:ENST00000656836.1:ENST00000501927.2:ENST00000505295.1	lncRNA	lncRNA	lncRNA	lncRNA	1	40	2	3.10863	3.75083	4.39303	0.0237246	0.00470896	0.118716	0.0631419
chrX	44931084	44931184	7649181	0	+	0.57	(0.515,0.57]	chrX	782726	567	INTRON	INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000675440.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000621147.5:ENST00000475233.1:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	70	2	2.12085	3.750805	5.38076	0.00319489	3.24968e-4	0.0520636	0.0165891
chr11	66078701	66078800	4807952	0	+	0.494949	(0.476,0.515]	chr11	447330	75	INTRON	INTRON	PACS1	ENSG00000175115.13	ENST00000320580.9:ENST00000527224.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	40	2	2.8863	3.750745	4.61519	0.0111679	0.00528365	0.0877435	0.0656295
chr19	1075873	1075972	6993735	0	+	0.494949	(0.476,0.515]	chr19	692778	6	INTRON	INTRON	ARHGAP45	ENSG00000180448.11	ENST00000539243.6:ENST00000313093.7:ENST00000587602.5:ENST00000591293.2:ENST00000590214.5:ENST00000586866.5:ENST00000543365.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	40	2	2.8863	3.750745	4.61519	0.0111679	0.00528365	0.0877435	0.0656295
chr7	75047860	75047958	3556977	0	-	0.479592	(0.476,0.515]	chr7	331201	44	INTRON	INTRON	RCC1L	ENSG00000274523.5	ENST00000614461.4:ENST00000610322.5:ENST00000618102.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	40	2	2.8863	3.750745	4.61519	0.0111679	0.00528365	0.0877435	0.0656295
chr15	80086015	80086115	6071302	0	+	0.39	(0.378,0.408]	chr15	578322	103	INTRON	INTRON	ZFAND6	ENSG00000086666.19	ENST00000613266.4:ENST00000561060.5:ENST00000559157.5:ENST00000261749.11:ENST00000561012.5:ENST00000564367.5:ENST00000558494.5:ENST00000618205.4:ENST00000560470.5:ENST00000560228.5:ENST00000559835.5:ENST00000559775.5:ENST00000558688.5:ENST00000560976.5:ENST00000560392.5:ENST00000558390.5:ENST00000558272.5:ENST00000557793.1:ENST00000616533.4:ENST00000558087.5:ENST00000558997.5:ENST00000558724.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	55	2	2.11194	3.7507099999999998	5.38948	0.0292534	2.85992e-4	0.128055	0.0150568
chr1	174419806	174419906	259728	0	+	0.37	(0.35,0.378]	chr1	30818	253	INTRON	INTRON	RABGAP1L	ENSG00000152061.24	ENST00000357444.10:ENST00000251507.8:ENST00000681986.1:ENST00000367690.5:ENST00000526253.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	74	2	2.41088	3.7507	5.09052	0.0047981	0.00123501	0.0602209	0.0326215
chr6	147389095	147389193	2990584	0	+	0.295918	(0.28,0.32]	chr6	280154	45	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	STXBP5	ENSG00000164506.15	ENST00000321680.11:ENST00000367481.7:ENST00000443556.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	79	2	2.14942	3.750655	5.35189	0.0143412	8.52844e-4	0.0966737	0.0264928
chr1	182868840	182868940	273289	0	+	0.33	(0.32,0.35]	chr1	31933	14	INTRON	INTRON	DHX9	ENSG00000135829.17	ENST00000367549.4	protein_coding	protein_coding	protein_coding	protein_coding	5	86	2	2.07821	3.75063	5.42305	0.00473999	0.00149027	0.0634645	0.035
chr10	12150261	12150361	4394148	0	+	0.49	(0.476,0.515]	chr10	405370	3	SS5_PROX	SS5_PROX:INTRON	SEC61A2	ENSG00000065665.21	ENST00000379051.5:ENST00000379033.7:ENST00000441368.5:ENST00000298428.14:ENST00000475268.5:ENST00000495368.1:ENST00000304267.12:ENST00000472221.5:ENST00000379020.8:ENST00000379017.7:ENST00000418772.1:ENST00000419021.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	82	2	3.41728	3.750595	4.08391	0.00165726	4.74551e-5	0.0369207	0.00562068
chr15	69422738	69422818	6058823	0	+	0.2875	(0.28,0.32]	chr15	576736	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	KIF23	ENSG00000137807.16	ENST00000260363.9:ENST00000643966.1:ENST00000395392.6:ENST00000352331.8:ENST00000561089.5:ENST00000647715.1:ENST00000679126.1:ENST00000558346.5:ENST00000559279.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	59	2	2.63379	3.7505499999999996	4.86731	0.0116253	0.00503861	0.0889104	0.0646039
chr1	26462032	26462131	50503	0	+	0.393939	(0.378,0.408]	chr1	6360	15	INTRON	INTRON	DHDDS	ENSG00000117682.17	ENST00000434391.6:ENST00000236342.12:ENST00000525682.6:ENST00000526219.5:ENST00000360009.6:ENST00000431933.5:ENST00000416052.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	41	2	2.72993	3.75049	4.77105	0.0188736	0.00330823	0.108861	0.0527031
chr12	119725391	119725489	5430717	0	-	0.397959	(0.378,0.408]	chr12	518868	22	INTRON	INTRON	CIT	ENSG00000122966.17	ENST00000392521.7:ENST00000261833.11:ENST00000677438.1:ENST00000677993.1:ENST00000678087.1:ENST00000678652.1:ENST00000676849.1:ENST00000678677.1:ENST00000545913.6:ENST00000679249.1:ENST00000679120.1:ENST00000677812.1:ENST00000677849.1:ENST00000679285.1:ENST00000677738.1:ENST00000676693.1:ENST00000678494.1:ENST00000612548.4:ENST00000392520.2:ENST00000537607.5:ENST00000676833.1:ENST00000536325.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	41	2	2.72993	3.75049	4.77105	0.0188736	0.00330823	0.108861	0.0527031
chr3	5143255	5143355	1353785	0	+	0.38	(0.378,0.408]	chr3	142361	143	INTRON	INTRON	ARL8B	ENSG00000134108.14	ENST00000429403.5:ENST00000256496.8:ENST00000455168.5:ENST00000444332.1:ENST00000419534.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	73	2	2.37969	3.750485	5.12128	0.00251746	0.00190547	0.0446195	0.0403738
chr9	107315983	107316082	4183709	0	+	0.424242	(0.408,0.44]	chr9	381568	39	INTRON	INTRON	RAD23B	ENSG00000119318.13	ENST00000358015.8:ENST00000416373.6:ENST00000457811.1	protein_coding	protein_coding	protein_coding	protein_coding	2	86	2	3.15414	3.75038	4.34662	0.00469847	9.84598e-6	0.0600108	0.00227957
chr14	101978236	101978333	5820360	0	+	0.494845	(0.476,0.515]	chr14	551983	21	INTRON	INTRON	DYNC1H1	ENSG00000197102.14	ENST00000360184.10:ENST00000684561.1:ENST00000680313.1:ENST00000679720.1:ENST00000680715.1:ENST00000681283.1:ENST00000681822.1:ENST00000679910.1:ENST00000681574.1:ENST00000645039.2:ENST00000645149.2:ENST00000680200.1:ENST00000680120.1:ENST00000644881.2:ENST00000681066.1:ENST00000680423.1:ENST00000681536.1:ENST00000679486.1:ENST00000681010.1:ENST00000679629.1:ENST00000681123.1:ENST00000680874.1:ENST00000680137.1:ENST00000643508.2:ENST00000680808.1:ENST00000681311.1:ENST00000681859.1:ENST00000643684.1:ENST00000643958.2:ENST00000680001.1:ENST00000681668.1:ENST00000645114.2:ENST00000681751.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	37	2	2.80729	3.750245	4.6932	0.0126008	0.00753088	0.0980703	0.074841
chr15	57137093	57137192	6034305	0	+	0.515152	(0.476,0.515]	chr15	574707	22	INTRON	INTRON	TCF12	ENSG00000140262.18	ENST00000438423.6:ENST00000267811.9:ENST00000333725.10:ENST00000560190.5:ENST00000559609.5:ENST00000557843.5:ENST00000557947.5:ENST00000561152.1:ENST00000561346.5:ENST00000559216.5:ENST00000560887.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	37	2	2.80729	3.750245	4.6932	0.0126008	0.00753088	0.0980703	0.074841
chr20	317154	317252	7302511	0	-	0.479592	(0.476,0.515]	chr20	743412	4	EXON_LNCRNA	EXON_LNCRNA	NRSN2-AS1	ENSG00000225377.6	ENST00000657126.1	lncRNA	lncRNA	lncRNA	lncRNA	1	37	2	2.80729	3.750245	4.6932	0.0126008	0.00753088	0.0980703	0.074841
chr3	21550593	21550693	1387414	0	+	0.5	(0.476,0.515]	chr3	145351	72	INTRON	INTRON	ZNF385D-AS1	ENSG00000225542.2	ENST00000662195.1:ENST00000412369.1	lncRNA	lncRNA	lncRNA	lncRNA	1	37	2	2.80729	3.750245	4.6932	0.0126008	0.00753088	0.0980703	0.074841
chr7	101928462	101928562	3367477	0	+	0.5	(0.476,0.515]	chr7	315225	119	INTRON	INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000497815.5:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000558469.5:ENST00000560541.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	37	2	2.80729	3.750245	4.6932	0.0126008	0.00753088	0.0980703	0.074841
chr9	137573508	137573607	4377566	0	-	0.484848	(0.476,0.515]	chr9	403637	80	INTRON	INTRON	DPH7	ENSG00000148399.13	ENST00000277540.7:ENST00000479650.5:ENST00000475100.5:ENST00000472113.5:ENST00000485189.5:ENST00000467768.5:ENST00000477690.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	37	2	2.80729	3.750245	4.6932	0.0126008	0.00753088	0.0980703	0.074841
chr16	89482147	89482246	6543518	0	-	0.434343	(0.408,0.44]	chr16	634281	505	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	60	2	2.30838	3.7502000000000004	5.19202	0.00547703	0.0016671	0.0671198	0.0369207
chr12	51164510	51164610	5325789	0	-	0.5	(0.476,0.515]	chr12	507890	390	INTRON	INTRON	TFCP2	ENSG00000135457.11	ENST00000257915.10:ENST00000685804.1:ENST00000549867.5:ENST00000548115.5:ENST00000548108.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	37	2	2.73205	3.75016	4.76827	0.0159328	0.00600704	0.109464	0.0674604
chr2	85618919	85619019	822037	0	+	0.5	(0.476,0.515]	chr2	91638	3	SS3_PROX	SS3_PROX:INTRON	USP39	ENSG00000168883.20	ENST00000459775.5:ENST00000491659.5:ENST00000474572.6:ENST00000450066.6:ENST00000613444.4:ENST00000448971.5:ENST00000442708.5:ENST00000465282.5:ENST00000409025.5:ENST00000455732.5:ENST00000409470.5:ENST00000323701.11:ENST00000458268.5:ENST00000409766.7:ENST00000493829.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	37	2	2.73205	3.75016	4.76827	0.0159328	0.00600704	0.109464	0.0674604
chr2	197499240	197499339	1307170	0	-	0.515152	(0.476,0.515]	chr2	136814	2	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HSPD1	ENSG00000144381.18	ENST00000388968.8:ENST00000426480.2:ENST00000345042.6:ENST00000452200.6:ENST00000679291.1:ENST00000677403.1:ENST00000678621.1:ENST00000678545.1:ENST00000676933.1:ENST00000678170.1:ENST00000476746.6:ENST00000678969.1:ENST00000428204.6:ENST00000418022.2:ENST00000439605.2:ENST00000440114.2:ENST00000461097.2:ENST00000677792.1:ENST00000678761.1:ENST00000677913.1:ENST00000430176.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	37	2	2.73205	3.75016	4.76827	0.0159328	0.00600704	0.109464	0.0674604
chr4	4589383	4589483	1919321	0	+	0.5	(0.476,0.515]	chr4	192891	12	INTRON	INTRON	STX18-AS1	ENSG00000247708.8	ENST00000664571.1:ENST00000670162.1:ENST00000656969.1:ENST00000664283.1:ENST00000608184.2:ENST00000653097.1:ENST00000499430.7:ENST00000512438.6:ENST00000610009.5:ENST00000502693.1:ENST00000665126.1:ENST00000667824.1:ENST00000655855.1	lncRNA	lncRNA	lncRNA	lncRNA	1	37	2	2.73205	3.75016	4.76827	0.0159328	0.00600704	0.109464	0.0674604
chr7	102071116	102071216	3368906	0	+	0.48	(0.476,0.515]	chr7	315245	3	INTRON	INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000497815.5:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000558469.5:ENST00000560541.5:ENST00000558836.5:ENST00000606749.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	37	2	2.73205	3.75016	4.76827	0.0159328	0.00600704	0.109464	0.0674604
chr9	126810314	126810414	4199404	0	+	0.49	(0.476,0.515]	chr9	383325	10	INTRON	INTRON	ZBTB43	ENSG00000169155.10	ENST00000449886.5:ENST00000450858.1:ENST00000373464.5	protein_coding	protein_coding	protein_coding	protein_coding	1	37	2	2.73205	3.75016	4.76827	0.0159328	0.00600704	0.109464	0.0674604
chr2	111439607	111439707	1211246	0	-	0.33	(0.32,0.35]	chr2	128899	88	INTRON	INTRON	MIR4435-2HG	ENSG00000172965.17	ENST00000645030.2:ENST00000642191.1:ENST00000673798.1:ENST00000645051.2:ENST00000673649.1:ENST00000669658.1:ENST00000669917.1:ENST00000661559.1:ENST00000653687.1:ENST00000667670.1:ENST00000609220.2:ENST00000656760.1:ENST00000609902.6:ENST00000666683.1:ENST00000674070.1:ENST00000662335.1:ENST00000664422.1:ENST00000673775.1:ENST00000674092.1:ENST00000673958.1:ENST00000658936.1:ENST00000662635.1:ENST00000666204.1:ENST00000659458.1:ENST00000664443.1:ENST00000670295.1:ENST00000661655.1:ENST00000666390.1:ENST00000659079.1:ENST00000660442.1:ENST00000664009.1:ENST00000439362.6:ENST00000654473.1:ENST00000664999.1:ENST00000673728.1:ENST00000659791.1:ENST00000666144.1:ENST00000659933.1:ENST00000670715.1:ENST00000653568.1:ENST00000643013.1:ENST00000673866.1:ENST00000443467.6:ENST00000669875.1:ENST00000673653.1:ENST00000673988.1:ENST00000661945.1:ENST00000669515.1:ENST00000431385.6:ENST00000656416.1:ENST00000674037.1:ENST00000432818.5:ENST00000674013.1:ENST00000444301.5:ENST00000673964.1:ENST00000673845.1:ENST00000673756.1:ENST00000673960.1:ENST00000673804.1:ENST00000673632.1:ENST00000453478.2:ENST00000673937.1:ENST00000673654.1:ENST00000409569.2:ENST00000674087.1:ENST00000419736.5:ENST00000673840.1:ENST00000674045.1:ENST00000673821.1:ENST00000643766.1:ENST00000308604.5:ENST00000674026.1:ENST00000604981.5:ENST00000603310.5:ENST00000673894.1:ENST00000442293.5:ENST00000441075.1	lncRNA	lncRNA	lncRNA	lncRNA	1	42	2	3.13277	3.7501599999999997	4.36755	0.0300552	0.00458313	0.129138	0.0622676
chr3	133808323	133808419	1509916	0	+	0.333333	(0.32,0.35]	chr3	157919	1	INTRON	INTRON	SRPRB	ENSG00000144867.13	ENST00000466490.7:ENST00000678299.1:ENST00000494297.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	42	2	3.13277	3.7501599999999997	4.36755	0.0300552	0.00458313	0.129138	0.0622676
chr1	207782823	207782917	305219	0	+	0.531915	(0.515,0.57]	chr1	35130	2	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	CD46	ENSG00000117335.21	ENST00000695779.1:ENST00000695777.1:ENST00000695778.1:ENST00000496723.2:ENST00000695782.1:ENST00000695781.1:ENST00000695780.1:ENST00000636114.2:ENST00000367042.6:ENST00000322875.8:ENST00000322918.9:ENST00000354848.5:ENST00000357714.5:ENST00000358170.6:ENST00000367041.5:ENST00000367047.5:ENST00000695783.1:ENST00000695784.1:ENST00000469535.5:ENST00000360212.6:ENST00000480003.5:ENST00000695786.1:ENST00000490278.2:ENST00000488596.5:ENST00000471987.1:ENST00000462968.2:ENST00000695787.1:ENST00000695788.1:ENST00000695789.1:ENST00000695790.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	62	2	1.84511	3.749925	5.65474	0.0167182	9.00945e-5	0.110511	0.00844245
chr16	22509081	22509179	6322700	0	+	0.408163	(0.378,0.408]	chr16	605452	13	INTRON	INTRON	NPIPB5	ENSG00000243716.11	ENST00000415654.5:ENST00000415833.6:ENST00000546168.5:ENST00000543407.5:ENST00000356156.7:ENST00000541154.5:ENST00000545375.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	182	2	3.54147	3.749815	3.95816	8.99839e-6	7.65923e-6	0.00231286	0.00197346
chr3	37365181	37365281	1397002	0	+	0.33	(0.32,0.35]	chr3	146465	35	INTRON	INTRON	GOLGA4	ENSG00000144674.17	ENST00000444882.5:ENST00000356847.8:ENST00000361924.7:ENST00000437131.1	protein_coding	protein_coding	protein_coding	protein_coding	3	66	2	2.2643	3.7497499999999997	5.2352	0.00712852	0.0028268	0.0756118	0.0472361
chr17	75147262	75147340	6836012	0	-	0.371795	(0.35,0.378]	chr17	675469	2	SS5_PROX	SS5_PROX:INTRON	JPT1	ENSG00000189159.16	ENST00000409753.8:ENST00000476258.5:ENST00000482348.5:ENST00000304834.11:ENST00000356033.8:ENST00000470924.5:ENST00000481647.5:ENST00000580380.1:ENST00000581874.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	57	2	1.98929	3.74974	5.51019	0.0417909	2.10803e-4	0.147075	0.0126882
chr4	24549717	24549815	2118659	0	-	0.357143	(0.35,0.378]	chr4	209230	3	INTRON	INTRON	DHX15	ENSG00000109606.13	ENST00000336812.5	protein_coding	protein_coding	protein_coding	protein_coding	2	57	2	1.98929	3.74974	5.51019	0.0417909	2.10803e-4	0.147075	0.0126882
chr12	111577769	111577868	5413017	0	-	0.545455	(0.515,0.57]	chr12	516941	130	INTRON	INTRON	ATXN2	ENSG00000204842.18	ENST00000642389.2:ENST00000608853.5:ENST00000672613.1:ENST00000673436.1:ENST00000643669.2:ENST00000616825.4:ENST00000389153.10:ENST00000550104.5:ENST00000483311.6:ENST00000672335.1:ENST00000673557.1:ENST00000673283.1:ENST00000673449.1:ENST00000535949.5:ENST00000542287.6:ENST00000644883.1:ENST00000647305.1:ENST00000671792.1:ENST00000392645.6:ENST00000672105.1:ENST00000549455.1:ENST00000548492.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	36	2	2.90311	3.749705	4.5963	0.0094233	0.00370287	0.0817766	0.0561162
chr16	16134808	16134908	6309644	0	+	0.53	(0.515,0.57]	chr16	603692	3	SS5_PROX	SS5_PROX:INTRON	ABCC1	ENSG00000103222.20	ENST00000678422.1:ENST00000677164.1:ENST00000399408.7:ENST00000572882.3:ENST00000399410.8:ENST00000676806.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	36	2	2.90311	3.749705	4.5963	0.0094233	0.00370287	0.0817766	0.0561162
chr7	135954729	135954829	3649246	0	-	0.52	(0.515,0.57]	chr7	339214	27	INTRON	INTRON	MTPN	ENSG00000105887.11	ENST00000393085.4:ENST00000435723.1	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	2.90311	3.749705	4.5963	0.0094233	0.00370287	0.0817766	0.0561162
chr20	49142709	49142809	7351916	0	-	0.28	[0,0.28]	chr20	749652	64	INTRON	INTRON	STAU1	ENSG00000124214.21	ENST00000371856.7:ENST00000371828.7:ENST00000340954.11:ENST00000347458.9:ENST00000360426.8:ENST00000371792.5:ENST00000371802.5:ENST00000437404.2	protein_coding	protein_coding	protein_coding	protein_coding	2	62	2	2.28885	3.749695	5.21054	0.0181093	0.00758653	0.114853	0.0749063
chr3	23811510	23811610	1387785	0	+	0.27	[0,0.28]	chr3	145383	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	UBE2E1	ENSG00000170142.12	ENST00000306627.8:ENST00000346855.7:ENST00000495141.5:ENST00000442670.5:ENST00000424381.5:ENST00000467766.5:ENST00000475680.5:ENST00000452012.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	62	2	2.28885	3.749695	5.21054	0.0181093	0.00758653	0.114853	0.0749063
chr2	201145932	201146030	981843	0	+	0.428571	(0.408,0.44]	chr2	105421	1	INTRON	INTRON	CFLAR	ENSG00000003402.21	ENST00000443227.5:ENST00000309955.8:ENST00000341582.10:ENST00000342795.9:ENST00000423241.6:ENST00000439154.6:ENST00000457277.5:ENST00000462763.5:ENST00000479953.6:ENST00000474842.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	37	2	2.82042	3.7496799999999997	4.67894	0.0120121	0.0087648	0.0962115	0.0788605
chr20	57373838	57373927	7288705	0	+	0.438202	(0.408,0.44]	chr20	741572	1	SS5_PROX	SS5_PROX:INTRON	RAE1	ENSG00000101146.13	ENST00000371242.6:ENST00000527947.5:ENST00000395841.7:ENST00000492498.5:ENST00000395840.6:ENST00000462438.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	37	2	2.74518	3.74958	4.75398	0.0152229	0.00703931	0.108535	0.0718189
chr2	175991231	175991331	1273092	0	-	0.35	(0.32,0.35]	chr2	134571	110	INTRON	INTRON	LNPK	ENSG00000144320.14	ENST00000272748.9:ENST00000544803.5:ENST00000409660.5:ENST00000392540.6	protein_coding	protein_coding	protein_coding	protein_coding	1	44	2	3.3273	3.749555	4.17181	0.04531	0.00218894	0.149888	0.0435144
chr7	92125152	92125252	3568918	0	-	0.34	(0.32,0.35]	chr7	332463	9	INTRON	INTRON	CYP51A1:ENSG00000289027	ENSG00000001630.18:ENSG00000289027.1	ENST00000691309.1:ENST00000003100.13:ENST00000692281.1:ENST00000693096.1:ENST00000450723.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	44	2	3.3273	3.749555	4.17181	0.04531	0.00218894	0.149888	0.0435144
chr9	33993786	33993885	4245289	0	-	0.333333	(0.32,0.35]	chr9	390463	43	INTRON	INTRON	UBAP2	ENSG00000137073.24	ENST00000379238.7:ENST00000683659.1:ENST00000682239.1:ENST00000683140.1:ENST00000682209.1:ENST00000681980.1:ENST00000360802.6:ENST00000683252.1:ENST00000684158.1:ENST00000682914.1:ENST00000683717.1:ENST00000379239.9:ENST00000683084.1:ENST00000684754.1:ENST00000629575.2:ENST00000684298.1:ENST00000412543.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	44	2	3.3273	3.749555	4.17181	0.04531	0.00218894	0.149888	0.0435144
chr1	51248071	51248170	98295	0	+	0.373737	(0.35,0.378]	chr1	13196	108	INTRON	INTRON	RNF11	ENSG00000123091.5	ENST00000242719.4:ENST00000494873.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	42	2	2.47065	3.749485	5.02832	0.0386172	0.00156444	0.142656	0.0365263
chr2	181028714	181028814	936453	0	+	0.37	(0.35,0.378]	chr2	102627	388	INTRON	INTRON	UBE2E3	ENSG00000170035.16	ENST00000602303.5:ENST00000602959.5:ENST00000602479.5:ENST00000392415.6:ENST00000602291.5:ENST00000410062.9:ENST00000602499.5:ENST00000602710.5:ENST00000602762.5:ENST00000602888.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	42	2	2.47065	3.749485	5.02832	0.0386172	0.00156444	0.142656	0.0365263
chr4	32175871	32175971	1943212	0	+	0.35	(0.32,0.35]	chr4	194749	174	INTRON	INTRON	LINC02506	ENSG00000251129.3	ENST00000665582.2:ENST00000667252.2:ENST00000660373.2:ENST00000684849.1:ENST00000686730.1:ENST00000685407.1:ENST00000655951.1	lncRNA	lncRNA	lncRNA	lncRNA	1	44	2	2.37794	3.749465	5.12099	0.0498601	0.00143632	0.156383	0.0347139
chr1	244693415	244693514	348116	0	+	0.454545	(0.44,0.476]	chr1	40375	10	INTRON	INTRON	DESI2	ENSG00000121644.19	ENST00000263831.11:ENST00000302550.16	protein_coding	protein_coding	protein_coding	protein_coding	2	50	2	2.59888	3.74944	4.9	0.00487719	0.00423315	0.0640618	0.0572185
chr10	876387	876486	4542030	0	-	0.353535	(0.35,0.378]	chr10	419281	33	INTRON	INTRON	LARP4B	ENSG00000107929.16	ENST00000316157.8:ENST00000690516.1:ENST00000476529.5:ENST00000406525.6:ENST00000481118.1:ENST00000412411.1:ENST00000693234.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	42	2	2.60341	3.74932	4.89523	0.0275785	0.00253947	0.123904	0.0465056
chr15	81678136	81678236	6242082	0	-	0.36	(0.35,0.378]	chr15	595853	156	INTRON	INTRON	ENSG00000259692	ENSG00000259692.6	ENST00000559428.2:ENST00000560054.6:ENST00000560097.1:ENST00000668584.1	lncRNA	lncRNA	lncRNA	lncRNA	1	42	2	2.60341	3.74932	4.89523	0.0275785	0.00253947	0.123904	0.0465056
chr7	152669175	152669274	3681551	0	-	0.434343	(0.408,0.44]	chr7	341687	53	INTRON	INTRON	XRCC2	ENSG00000196584.3	ENST00000359321.2	protein_coding	protein_coding	protein_coding	protein_coding	4	68	2	1.92871	3.7492199999999998	5.56973	0.0127189	3.81714e-4	0.0986242	0.0181283
chrX	23784503	23784586	7630708	0	+	0.325301	(0.32,0.35]	chrX	781421	1	SS5_PROX	SS5_PROX:INTRON	SAT1	ENSG00000130066.17	ENST00000379270.5:ENST00000379254.5:ENST00000489394.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	17	518	2	3.07884	3.7491700000000003	4.4195	6.82306e-7	1.4118e-7	4.56025e-4	1.78743e-4
chr1	11908367	11908463	25917	0	+	0.354167	(0.35,0.378]	chr1	2931	2	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	ENSG00000285646	ENSG00000285646.2	ENST00000661075.1:ENST00000649268.2:ENST00000650448.1:ENST00000666735.1:ENST00000660618.1:ENST00000658167.1	lncRNA	lncRNA	lncRNA	lncRNA	4	94	2	2.53498	3.74914	4.9633	0.00198929	0.00138346	0.0411469	0.0338784
chr19	9609406	9609505	7133033	0	-	0.323232	(0.32,0.35]	chr19	718837	22	UTR3	UTR3:EXON_MRNA:INTRON	ZNF561	ENSG00000171469.11	ENST00000444802.5:ENST00000424629.5:ENST00000302851.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	42	2	2.31405	3.7491	5.18415	0.0517107	0.00333629	0.176696	0.0512081
chr6	104782549	104782643	3171706	0	-	0.340426	(0.32,0.35]	chr6	295853	2	INTRON	INTRON	HACE1	ENSG00000085382.12	ENST00000262903.9:ENST00000369127.8:ENST00000416605.6:ENST00000369125.6:ENST00000518503.5:ENST00000517424.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	42	2	2.31405	3.7491	5.18415	0.0517107	0.00333629	0.176696	0.0512081
chr8	125208884	125208984	3854662	0	+	0.34	(0.32,0.35]	chr8	355249	262	INTRON	INTRON	NSMCE2	ENSG00000156831.8	ENST00000517532.5:ENST00000287437.8:ENST00000522563.5:ENST00000517315.1	protein_coding	protein_coding	protein_coding	protein_coding	1	42	2	2.31405	3.7491	5.18415	0.0517107	0.00333629	0.176696	0.0512081
chr18	12974855	12974955	6876430	0	+	0.37	(0.35,0.378]	chr18	681303	3	SS5_PROX	SS5_PROX:INTRON	SEH1L	ENSG00000085415.16	ENST00000262124.15:ENST00000399892.7:ENST00000587761.1:ENST00000592582.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	52	2	2.39583	3.749045	5.10226	0.0107976	0.00327038	0.0920575	0.0508595
chr3	25645670	25645770	1641977	0	-	0.36	(0.35,0.378]	chr3	168597	2	SS3_PROX	SS3_PROX:INTRON	TOP2B	ENSG00000077097.16	ENST00000264331.9:ENST00000435706.6:ENST00000424225.1	protein_coding	protein_coding	protein_coding	protein_coding	2	52	2	2.39583	3.749045	5.10226	0.0107976	0.00327038	0.0920575	0.0508595
chr12	54281022	54281094	5143371	0	+	0.416667	(0.408,0.44]	chr12	485529	1	CDS_START	CDS_START:CDS:UTR5:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HNRNPA1	ENSG00000135486.19	ENST00000546500.5:ENST00000677385.1:ENST00000677210.1:ENST00000677375.1:ENST00000677249.1:ENST00000676725.1:ENST00000678418.1:ENST00000550482.2:ENST00000340913.11:ENST00000679101.1:ENST00000547566.5:ENST00000547708.5:ENST00000679228.1:ENST00000547870.2:ENST00000551702.5:ENST00000678365.1:ENST00000330752.12:ENST00000676794.1:ENST00000547276.5:ENST00000678919.1:ENST00000678690.1:ENST00000677220.1:ENST00000678077.1:ENST00000548688.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	12	400	2	3.57323	3.7490449999999997	3.92486	1.23104e-7	8.77631e-8	1.67176e-4	1.27261e-4
chr12	51002611	51002710	5324543	0	-	0.515152	(0.476,0.515]	chr12	507702	16	INTRON	INTRON	SLC11A2	ENSG00000110911.17	ENST00000547688.7:ENST00000644495.1:ENST00000643884.1:ENST00000546636.5:ENST00000547198.5:ENST00000394904.9:ENST00000262052.9:ENST00000643123.1:ENST00000646740.1:ENST00000642227.1:ENST00000541174.6:ENST00000545993.7:ENST00000546743.5:ENST00000547510.5:ENST00000546488.5:ENST00000547579.5:ENST00000550714.5:ENST00000547732.5:ENST00000549110.5:ENST00000548193.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	53	2	2.05154	3.749035	5.44653	0.0336015	2.03754e-4	0.134145	0.0124395
chr12	112292686	112292785	5416849	0	-	0.474747	(0.44,0.476]	chr12	517632	90	INTRON	INTRON	HECTD4	ENSG00000173064.14	ENST00000550722.5:ENST00000377560.9:ENST00000682272.1:ENST00000550724.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	50	2	2.14573	3.7489999999999997	5.35227	0.0238593	8.47974e-4	0.129075	0.0267232
chr12	57064458	57064545	5336703	0	-	0.356322	(0.35,0.378]	chr12	510356	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NEMP1	ENSG00000166881.10	ENST00000300128.9:ENST00000379391.7:ENST00000554340.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	52	2	2.2877	3.74894	5.21018	0.0155765	0.00228003	0.109411	0.0426265
chr1	193241147	193241247	285825	0	+	0.42	(0.408,0.44]	chr1	32861	29	INTRON	INTRON	CDC73	ENSG00000134371.14	ENST00000643006.1:ENST00000367435.5:ENST00000650197.1:ENST00000648071.1:ENST00000635846.1:ENST00000649613.1:ENST00000477868.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	76	2	1.9279	3.748815	5.56973	0.00807087	3.81714e-4	0.0806514	0.0181283
chr6	167830128	167830227	3034369	0	+	0.373737	(0.35,0.378]	chr6	282711	18	INTRON	INTRON	AFDN	ENSG00000130396.21	ENST00000683244.1:ENST00000400825.8:ENST00000351017.9:ENST00000344191.8:ENST00000392112.5:ENST00000392108.7:ENST00000400824.8:ENST00000400822.7:ENST00000447894.6:ENST00000366809.6:ENST00000366806.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	64	2	2.39519	3.7487250000000003	5.10226	0.00401951	0.00327038	0.0578189	0.0508595
chr7	121142641	121142739	3395194	0	+	0.377551	(0.35,0.378]	chr7	317777	1	INTRON	INTRON	CPED1	ENSG00000106034.18	ENST00000310396.10:ENST00000450913.6:ENST00000423795.5	protein_coding	protein_coding	protein_coding	protein_coding	10	363	2	3.74253	3.7485549999999996	3.75458	1.75343e-6	7.3116e-8	8.86829e-4	1.17561e-4
chr1	212300933	212301030	308229	0	+	0.443299	(0.44,0.476]	chr1	35555	15	INTRON	INTRON	PPP2R5A	ENSG00000066027.12	ENST00000261461.7	protein_coding	protein_coding	protein_coding	protein_coding	2	51	2	2.00609	3.7485299999999997	5.49097	0.0360127	4.8612e-4	0.152355	0.0203841
chr7	1112660	1112760	3461587	0	-	0.45	(0.44,0.476]	chr7	323589	28	INTRON	INTRON	C7orf50	ENSG00000146540.15	ENST00000357429.10:ENST00000397100.6:ENST00000397098.8:ENST00000488073.1:ENST00000491163.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	51	2	2.00609	3.7485299999999997	5.49097	0.0360127	4.8612e-4	0.152355	0.0203841
chr14	52725520	52725619	5716892	0	+	0.474747	(0.44,0.476]	chr14	543019	11	INTRON	INTRON	PSMC6	ENSG00000100519.12	ENST00000612399.4:ENST00000445930.7:ENST00000555175.1:ENST00000557557.1:ENST00000557632.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	37	2	2.89047	3.74847	4.60647	0.0102339	0.00955699	0.0863913	0.0850389
chr7	117033584	117033684	3386793	0	+	0.45	(0.44,0.476]	chr7	317151	102	INTRON	INTRON	ST7:ST7-OT4	ENSG00000004866.22:ENSG00000214188.9	ENST00000393446.6:ENST00000265437.9:ENST00000393451.7:ENST00000438863.5:ENST00000393449.5:ENST00000443979.5:ENST00000323984.8:ENST00000417919.5:ENST00000446490.5:ENST00000471110.5:ENST00000422922.5:ENST00000432298.5:ENST00000449366.5:ENST00000487459.5:ENST00000393443.5:ENST00000467538.5:ENST00000434836.5:ENST00000465133.5:ENST00000477742.5:ENST00000462544.1:ENST00000393444.7:ENST00000393447.8	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:nonsense_mediated_decay:lncRNA:processed_transcript	1	37	2	2.89047	3.74847	4.60647	0.0102339	0.00955699	0.0863913	0.0850389
chr10	28563128	28563228	4414105	0	+	0.52	(0.515,0.57]	chr10	407148	247	INTRON	INTRON	WAC	ENSG00000095787.24	ENST00000680735.1:ENST00000375664.8:ENST00000428935.6:ENST00000651598.1:ENST00000628285.3:ENST00000681112.1:ENST00000679570.1:ENST00000375646.5:ENST00000354911.9:ENST00000347934.8:ENST00000420266.6:ENST00000651885.1:ENST00000651441.1:ENST00000679398.1:ENST00000424454.5:ENST00000442148.6:ENST00000448193.5:ENST00000414108.6:ENST00000679428.1:ENST00000439676.5:ENST00000345541.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	34	2	2.98677	3.748385	4.51	0.00809449	0.00632549	0.0766625	0.0722266
chr21	39281346	39281445	7465216	0	-	0.545455	(0.515,0.57]	chr21	760548	7	INTRON	INTRON	BRWD1	ENSG00000185658.14	ENST00000333229.6:ENST00000342449.8:ENST00000380800.7	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	2.98677	3.748385	4.51	0.00809449	0.00632549	0.0766625	0.0722266
chr9	135935672	135935770	4372299	0	-	0.408163	(0.378,0.408]	chr9	402502	18	INTRON	INTRON	UBAC1	ENSG00000130560.9	ENST00000371756.4:ENST00000489050.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	155	2	3.21201	3.748315	4.28462	3.32237e-5	1.78089e-5	0.00487221	0.00321634
chr17	28052907	28053007	6582622	0	+	0.47	(0.44,0.476]	chr17	639835	41	INTRON	INTRON	NLK	ENSG00000087095.13	ENST00000407008.8:ENST00000496808.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	37	2	2.66433	3.748175	4.83202	0.0194358	0.00525002	0.119831	0.0633615
chr17	31128057	31128157	6591464	0	+	0.46	(0.44,0.476]	chr17	641053	323	INTRON	INTRON	NF1	ENSG00000196712.20	ENST00000696138.1:ENST00000356175.7:ENST00000487476.5:ENST00000691014.1:ENST00000358273.9:ENST00000431387.8:ENST00000579081.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	37	2	2.66433	3.748175	4.83202	0.0194358	0.00525002	0.119831	0.0633615
chr8	140850663	140850763	4078557	0	-	0.47	(0.44,0.476]	chr8	370519	36	INTRON	INTRON	PTK2	ENSG00000169398.20	ENST00000696786.1:ENST00000522684.5:ENST00000395218.3:ENST00000519654.5:ENST00000521059.5:ENST00000517887.5:ENST00000519993.5:ENST00000340930.7:ENST00000519419.5:ENST00000524357.5:ENST00000521791.5:ENST00000523067.5:ENST00000520828.5:ENST00000520475.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	37	2	2.66433	3.748175	4.83202	0.0194358	0.00525002	0.119831	0.0633615
chr4	102811288	102811387	2213197	0	-	0.424242	(0.408,0.44]	chr4	216758	10	EXON_MRNA	EXON_MRNA:INTRON	UBE2D3	ENSG00000109332.20	ENST00000453744.7:ENST00000394804.6:ENST00000394803.9:ENST00000394801.8:ENST00000343106.9:ENST00000508474.5:ENST00000503742.5:ENST00000321805.11:ENST00000350435.11:ENST00000338145.7:ENST00000349311.12:ENST00000504211.5:ENST00000357194.10:ENST00000505207.5:ENST00000507845.5:ENST00000502404.5:ENST00000508635.5:ENST00000505307.5:ENST00000510129.5:ENST00000508476.5:ENST00000502563.5:ENST00000508238.5:ENST00000514755.5:ENST00000508974.5:ENST00000502690.5:ENST00000508818.5:ENST00000503418.5:ENST00000508249.1:ENST00000513098.5:ENST00000503282.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	267	2	3.39807	3.74817	4.09827	3.29838e-6	3.53612e-7	0.00128575	3.01467e-4
chr1	180754570	180754670	270822	0	+	0.53	(0.515,0.57]	chr1	31620	718	INTRON	INTRON	XPR1	ENSG00000143324.14	ENST00000367590.9:ENST00000367589.3	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	2.65834	3.74799	4.83764	0.0187418	0.00279527	0.117523	0.0469265
chr11	62788325	62788425	4961239	0	-	0.54	(0.515,0.57]	chr11	466855	4	SS3_PROX	SS3_PROX:INTRON	TMEM223	ENSG00000168569.8	ENST00000527073.1:ENST00000528367.1:ENST00000525631.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	34	2	2.65834	3.74799	4.83764	0.0187418	0.00279527	0.117523	0.0469265
chr19	10913085	10913182	7015390	0	+	0.56701	(0.515,0.57]	chr19	697097	4	INTRON	INTRON	CARM1	ENSG00000142453.12	ENST00000327064.9:ENST00000590699.5:ENST00000344150.8:ENST00000586221.5:ENST00000589693.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	34	2	2.65834	3.74799	4.83764	0.0187418	0.00279527	0.117523	0.0469265
chr6	161016211	161016310	3024735	0	+	0.252525	[0,0.28]	chr6	282304	238	INTRON	INTRON	MAP3K4	ENSG00000085511.20	ENST00000366919.6:ENST00000392142.9:ENST00000542952.5:ENST00000366920.6:ENST00000348824.11:ENST00000544041.5:ENST00000490904.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	46	2	2.80396	3.747935	4.69191	0.0269474	0.0161429	0.123442	0.109464
chr1	35385041	35385141	69464	0	+	0.58	(0.57,1]	chr1	8770	2	SS3_PROX	SS3_PROX:INTRON	ZMYM4	ENSG00000146463.12	ENST00000314607.11:ENST00000457946.1	protein_coding	protein_coding	protein_coding	protein_coding	1	26	2	3.183	3.747885	4.31277	0.00346264	0.00254356	0.0539802	0.0448135
chr16	18396653	18396752	6455023	0	-	0.575758	(0.57,1]	chr16	622259	3	INTRON	INTRON	PKD1P5	ENSG00000254681.6	ENST00000532415.5:ENST00000544578.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	1	26	2	3.183	3.747885	4.31277	0.00346264	0.00254356	0.0539802	0.0448135
chr4	88838537	88838637	2200771	0	-	0.58	(0.57,1]	chr4	215959	153	INTRON	INTRON	FAM13A	ENSG00000138640.15	ENST00000264344.10:ENST00000511976.5:ENST00000502459.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	26	2	3.183	3.747885	4.31277	0.00346264	0.00254356	0.0539802	0.0448135
chr1	1743950	1744050	361420	0	-	0.43	(0.408,0.44]	chr1	42139	3	SS5_PROX	SS5_PROX:INTRON	SLC35E2A	ENSG00000215790.8	ENST00000647043.1:ENST00000246421.4	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	2	82	2	3.52471	3.747725	3.97074	0.00112428	8.66152e-5	0.0306963	0.00783027
chrX	24059687	24059787	7630783	0	+	0.37	(0.35,0.378]	chrX	781450	2	SS3_PROX	SS3_PROX:INTRON	EIF2S3	ENSG00000130741.11	ENST00000487075.1:ENST00000253039.9:ENST00000423068.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	39	2	2.92952	3.74751	4.5655	0.0155464	0.00881187	0.100909	0.084878
chr1	47308978	47309078	446060	0	-	0.4	(0.378,0.408]	chr1	54067	36	INTRON	INTRON	STIL	ENSG00000123473.17	ENST00000360380.7:ENST00000371877.8:ENST00000337817.10:ENST00000682977.1:ENST00000396221.6:ENST00000447475.7:ENST00000436811.2	protein_coding	protein_coding	protein_coding	protein_coding	1	40	2	3.27907	3.74735	4.21563	0.0315429	0.0023379	0.13151	0.0442989
chr11	981994	982092	4721657	0	+	0.387755	(0.378,0.408]	chr11	436679	3	INTRON	INTRON	AP2A2	ENSG00000183020.15	ENST00000529818.6:ENST00000332231.9:ENST00000448903.7:ENST00000534328.6:ENST00000525796.5:ENST00000529858.6:ENST00000693238.1:ENST00000687890.1:ENST00000687792.1:ENST00000528815.5:ENST00000528195.6:ENST00000531548.6:ENST00000534485.6:ENST00000527024.2:ENST00000526753.6:ENST00000530801.6:ENST00000524559.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	40	2	3.27907	3.74735	4.21563	0.0315429	0.0023379	0.13151	0.0442989
chr12	123227816	123227916	5444013	0	-	0.38	(0.378,0.408]	chr12	520876	2	SS3_PROX	SS3_PROX:INTRON	MPHOSPH9	ENSG00000051825.15	ENST00000606320.6:ENST00000541076.6:ENST00000545556.6:ENST00000537854.5:ENST00000539639.5:ENST00000541437.5:ENST00000538169.5:ENST00000535049.5:ENST00000545406.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	40	2	3.27907	3.74735	4.21563	0.0315429	0.0023379	0.13151	0.0442989
chr18	173907	174007	6854981	0	+	0.39	(0.378,0.408]	chr18	679508	67	INTRON	INTRON	USP14	ENSG00000101557.15	ENST00000582707.5:ENST00000400266.7:ENST00000261601.8:ENST00000578942.5:ENST00000383589.6:ENST00000583119.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	40	2	3.27907	3.74735	4.21563	0.0315429	0.0023379	0.13151	0.0442989
chr1	65431113	65431207	137293	0	+	0.319149	(0.28,0.32]	chr1	15489	7	INTRON	INTRON	LEPROT:LEPR	ENSG00000213625.9:ENSG00000116678.20	ENST00000475108.5:ENST00000371060.7:ENST00000371059.7:ENST00000349533.11:ENST00000371065.9:ENST00000488747.5:ENST00000613538.1	protein_coding	protein_coding	protein_coding	protein_coding	4	164	2	3.2748	3.74724	4.21968	9.19088e-5	6.71944e-5	0.00853134	0.00678102
chr8	31073886	31073985	3728340	0	+	0.474747	(0.44,0.476]	chr8	346558	52	INTRON	INTRON	WRN	ENSG00000165392.11	ENST00000650667.1:ENST00000298139.7:ENST00000651642.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	69	2	1.65297	3.74722	5.84147	0.0331814	1.03947e-4	0.145918	0.00915599
chr3	19965848	19965948	1376223	0	+	0.55	(0.515,0.57]	chr3	145051	126	INTRON	INTRON	RAB5A	ENSG00000144566.11	ENST00000273047.9:ENST00000412966.5:ENST00000446547.5:ENST00000422242.1:ENST00000469122.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	38	2	2.12971	3.747055	5.3644	0.0757903	1.52226e-4	0.194427	0.0106137
chr16	24022446	24022546	6325627	0	+	0.37	(0.35,0.378]	chr16	605711	335	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000498739.1:ENST00000647422.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	39	2	2.57049	3.74702	4.92355	0.0262669	0.00573514	0.133676	0.0657377
chr16	89874749	89874798	6422443	0	+	0.367347	(0.35,0.378]	chr16	616712	1	SS3_ADJ	SS3_ADJ:SS5_ADJ:SS3_PROX:SS5_PROX:INTRON	TCF25	ENSG00000141002.20	ENST00000640279.1:ENST00000263347.11:ENST00000263346.13:ENST00000561585.1:ENST00000561958.5:ENST00000614813.4:ENST00000563032.1:ENST00000565196.5:ENST00000564652.5:ENST00000568412.5:ENST00000563406.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	39	2	2.57049	3.74702	4.92355	0.0262669	0.00573514	0.133676	0.0657377
chrX	72486044	72486144	7835435	0	-	0.37	(0.35,0.378]	chrX	799327	13	UTR3	UTR3:EXON_MRNA:INTRON	HDAC8	ENSG00000147099.21	ENST00000373583.6:ENST00000373573.9:ENST00000648850.1:ENST00000648452.1:ENST00000649097.1:ENST00000647886.1:ENST00000648855.1:ENST00000647654.1:ENST00000648939.1:ENST00000648504.1:ENST00000648459.1:ENST00000373589.9:ENST00000650604.1:ENST00000647594.1:ENST00000647980.1:ENST00000647859.1:ENST00000650076.1:ENST00000648731.1:ENST00000649181.1:ENST00000649274.1:ENST00000650471.1:ENST00000647641.1:ENST00000649543.1:ENST00000373568.7:ENST00000648139.1:ENST00000648834.1:ENST00000648711.1:ENST00000436675.6:ENST00000647606.1:ENST00000415409.6:ENST00000478743.2:ENST00000648298.1:ENST00000648870.1:ENST00000649116.1:ENST00000649752.1:ENST00000647718.1:ENST00000649242.1:ENST00000649518.1:ENST00000648285.1:ENST00000412342.6:ENST00000373571.6:ENST00000439122.7:ENST00000648962.1:ENST00000650126.1:ENST00000648036.1:ENST00000647974.1:ENST00000373560.7:ENST00000373559.8:ENST00000648577.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	39	2	2.57049	3.74702	4.92355	0.0262669	0.00573514	0.133676	0.0657377
chr1	203820772	203820871	296935	0	+	0.363636	(0.35,0.378]	chr1	34151	17	INTRON	INTRON	ZC3H11A:ZBED6	ENSG00000058673.17:ENSG00000257315.3	ENST00000367210.3:ENST00000453771.5:ENST00000638800.1:ENST00000367214.5:ENST00000639812.1:ENST00000367212.7:ENST00000332127.8:ENST00000550078.2:ENST00000495527.5:ENST00000640465.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	53	2	2.63527	3.7469849999999996	4.8587	0.00695662	0.00443588	0.0718189	0.061054
chr5	181255618	181255718	2563423	0	+	0.3	(0.28,0.32]	chr5	245312	73	INTRON	INTRON	CTC-338M12.4	ENSG00000233937.8	ENST00000506340.3:ENST00000505151.6:ENST00000511331.5:ENST00000417281.2	lncRNA	lncRNA	lncRNA	lncRNA	6	96	2	1.4144	3.7469599999999996	6.07952	0.042942	1.93993e-4	0.162255	0.0127226
chr6	31835634	31835714	2843839	0	+	0.5375	(0.515,0.57]	chr6	267907	2	SS5_PROX	SS5_PROX:INTRON	SNHG32	ENSG00000204387.14	ENST00000375640.7:ENST00000375641.6:ENST00000375635.6:ENST00000375638.7:ENST00000648677.1:ENST00000375642.6:ENST00000614363.4:ENST00000395789.5:ENST00000375633.5	lncRNA	lncRNA	lncRNA	lncRNA	3	59	2	2.364	3.74687	5.12974	0.00447856	4.54392e-4	0.0593175	0.0192381
chr1	17417442	17417541	384758	0	-	0.434343	(0.408,0.44]	chr1	45465	4	INTRON	INTRON	RCC2	ENSG00000179051.14	ENST00000375436.9:ENST00000375433.3	protein_coding	protein_coding	protein_coding	protein_coding	7	181	2	2.68491	3.746665	4.80842	9.78505e-5	1.37898e-6	0.00831756	7.65967e-4
chr4	511831	511929	1907481	0	+	0.44898	(0.44,0.476]	chr4	191131	25	INTRON	INTRON	PIGG	ENSG00000174227.16	ENST00000453061.7:ENST00000504187.5:ENST00000310340.9:ENST00000504346.5:ENST00000503111.5:ENST00000383028.8:ENST00000506402.5:ENST00000509768.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	39	2	2.29425	3.746525	5.1988	0.0518406	0.00151532	0.176696	0.0352794
chr7	127853819	127853919	3404430	0	+	0.46	(0.44,0.476]	chr7	318146	90	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000468166.5:ENST00000465900.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	39	2	2.29425	3.746525	5.1988	0.0518406	0.00151532	0.176696	0.0352794
chr5	32147176	32147276	2597244	0	-	0.3	(0.28,0.32]	chr5	246744	29	INTRON	INTRON	GOLPH3	ENSG00000113384.14	ENST00000265070.7:ENST00000503610.5:ENST00000512668.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	69	2	2.14534	3.746495	5.34765	0.0117054	0.00287138	0.0962115	0.0474836
chr22	28524463	28524563	7571380	0	-	0.43	(0.408,0.44]	chr22	774287	815	INTRON	INTRON	TTC28	ENSG00000100154.15	ENST00000397906.7	protein_coding	protein_coding	protein_coding	protein_coding	1	42	2	3.05705	3.7464250000000003	4.4358	0.00893097	0.00658331	0.0849778	0.0701901
chr4	169585148	169585248	2296881	0	-	0.41	(0.408,0.44]	chr4	222243	4	SS5_PROX	SS5_PROX:INTRON	NEK1	ENSG00000137601.18	ENST00000687054.1:ENST00000507142.6:ENST00000686697.1:ENST00000688934.1:ENST00000685111.1:ENST00000687528.1:ENST00000687643.1:ENST00000439128.6:ENST00000511633.5:ENST00000510533.5:ENST00000512193.5:ENST00000693604.1:ENST00000692450.1:ENST00000687219.1:ENST00000693085.1:ENST00000509912.5:ENST00000690631.1:ENST00000688487.1:ENST00000688653.1:ENST00000692868.1:ENST00000692218.1:ENST00000505119.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	42	2	3.05705	3.7464250000000003	4.4358	0.00893097	0.00658331	0.0849778	0.0701901
chr1	234472030	234472121	661364	0	-	0.538462	(0.515,0.57]	chr1	78256	4	INTRON	INTRON	TARBP1	ENSG00000059588.10	ENST00000040877.2	protein_coding	protein_coding	protein_coding	protein_coding	2	45	2	2.51561	3.746415	4.97722	0.00635044	0.00168681	0.0723103	0.0370386
chr10	92889754	92889853	4492029	0	+	0.525253	(0.515,0.57]	chr10	413705	408	INTRON	INTRON	EXOC6	ENSG00000138190.17	ENST00000671701.1:ENST00000672817.1:ENST00000371552.8:ENST00000443748.6:ENST00000371543.5:ENST00000260762.10	protein_coding	protein_coding	protein_coding	protein_coding	2	45	2	2.32836	3.746245	5.16413	0.0126662	8.14815e-4	0.0982897	0.0263656
chr17	31954071	31954171	6595848	0	+	0.51	(0.476,0.515]	chr17	641554	60	INTRON	INTRON	SUZ12	ENSG00000178691.11	ENST00000322652.10:ENST00000580398.1	protein_coding	protein_coding	protein_coding	protein_coding	1	37	2	2.65268	3.74615	4.83962	0.0201975	0.00480934	0.121243	0.0602209
chr17	49325608	49325708	6792185	0	-	0.48	(0.476,0.515]	chr17	670175	27	INTRON	INTRON	ZNF652	ENSG00000198740.9	ENST00000430262.3:ENST00000508237.5:ENST00000362063.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	37	2	2.65268	3.74615	4.83962	0.0201975	0.00480934	0.121243	0.0602209
chr9	128468782	128468882	4205033	0	+	0.48	(0.476,0.515]	chr9	384458	2	SS3_PROX	SS3_PROX:INTRON	ODF2	ENSG00000136811.17	ENST00000497812.6:ENST00000393533.6:ENST00000351030.8:ENST00000372814.7:ENST00000444119.7:ENST00000393527.8:ENST00000469582.6:ENST00000604420.5:ENST00000448249.8:ENST00000372807.10:ENST00000688016.1:ENST00000686232.1:ENST00000434106.7:ENST00000546203.5:ENST00000446274.5:ENST00000421776.6:ENST00000432065.6:ENST00000372791.7:ENST00000470061.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	37	2	2.65268	3.74615	4.83962	0.0201975	0.00480934	0.121243	0.0602209
chr8	73863868	73863968	3972110	0	-	0.31	(0.28,0.32]	chr8	364247	330	INTRON	INTRON	ENSG00000258677:UBE2W	ENSG00000258677.2:ENSG00000104343.21	ENST00000358757.5:ENST00000602593.6:ENST00000517608.5:ENST00000650817.1:ENST00000422906.6:ENST00000419880.7:ENST00000651945.1:ENST00000519277.5:ENST00000519255.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	47	2	2.18975	3.74614	5.30253	0.0776042	0.0010319	0.196285	0.0294094
chr1	29071804	29071903	60553	0	+	0.252525	[0,0.28]	chr1	7748	13	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000647918.1:ENST00000646800.1:ENST00000644342.1:ENST00000646189.1:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000373798.5:ENST00000644600.1:ENST00000649674.1:ENST00000643173.1:ENST00000343067.9:ENST00000644780.1:ENST00000650265.1:ENST00000643604.1:ENST00000349460.9:ENST00000645111.1:ENST00000643302.1:ENST00000636666.1:ENST00000644848.1:ENST00000646871.1:ENST00000488277.1:ENST00000490308.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	62	2	2.33097	3.7461349999999998	5.1613	0.0158969	0.00866441	0.109464	0.0787025
chr5	131784824	131784924	2720623	0	-	0.23	[0,0.28]	chr5	255730	398	INTRON	INTRON	FNIP1	ENSG00000217128.13	ENST00000510461.6:ENST00000307954.12:ENST00000307968.11:ENST00000511848.1	protein_coding	protein_coding	protein_coding	protein_coding	2	62	2	2.33097	3.7461349999999998	5.1613	0.0158969	0.00866441	0.109464	0.0787025
chrX	77778154	77778254	7847390	0	-	0.37	(0.35,0.378]	chrX	800211	606	INTRON	INTRON	ATRX	ENSG00000085224.23	ENST00000373344.11:ENST00000395603.7:ENST00000480283.5:ENST00000624166.3:ENST00000624032.3:ENST00000623321.3:ENST00000624668.3:ENST00000622960.1:ENST00000624193.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	52	2	2.44701	3.7460649999999998	5.04512	0.00900997	0.00393262	0.0851009	0.0548259
chrX	136919660	136919759	7727564	0	+	0.484848	(0.476,0.515]	chrX	790760	51	INTRON	INTRON	TM9SF5P	ENSG00000234062.9	ENST00000650669.2:ENST00000687469.1:ENST00000431464.6:ENST00000685550.1:ENST00000685929.1:ENST00000424306.5:ENST00000687978.1:ENST00000688713.1:ENST00000693626.1:ENST00000686432.1:ENST00000693698.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	2	51	2	1.99341	3.74604	5.49867	0.037389	4.28561e-4	0.155878	0.0189958
chr11	114444019	114444106	4869010	0	+	0.413793	(0.408,0.44]	chr11	454403	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	REXO2	ENSG00000076043.11	ENST00000544010.5:ENST00000265881.10:ENST00000539754.5:ENST00000539275.5:ENST00000539333.5:ENST00000541703.5:ENST00000543131.5:ENST00000538198.5:ENST00000539119.5:ENST00000542186.1:ENST00000544827.5:ENST00000546316.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	37	2	2.89193	3.7458599999999995	4.59979	0.0109537	0.00950364	0.0873034	0.0863579
chr16	67060506	67060606	6365859	0	+	0.41	(0.408,0.44]	chr16	611422	139	INTRON	INTRON	CBFB	ENSG00000067955.15	ENST00000651988.1:ENST00000652360.1:ENST00000561924.6:ENST00000290858.11:ENST00000412916.7:ENST00000564034.6:ENST00000650873.1:ENST00000563939.3:ENST00000565389.1:ENST00000567947.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	37	2	2.89193	3.7458599999999995	4.59979	0.0109537	0.00950364	0.0873034	0.0863579
chr17	16164183	16164281	6734718	0	-	0.428571	(0.408,0.44]	chr17	660725	50	INTRON	INTRON	NCOR1	ENSG00000141027.22	ENST00000268712.8:ENST00000395851.5:ENST00000395848.5:ENST00000411510.5:ENST00000582357.5:ENST00000436828.5:ENST00000460276.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	37	2	2.89193	3.7458599999999995	4.59979	0.0109537	0.00950364	0.0873034	0.0863579
chr3	47845102	47845199	1420405	0	+	0.42268	(0.408,0.44]	chr3	149252	15	INTRON	INTRON	DHX30	ENSG00000132153.15	ENST00000395745.6:ENST00000445061.6:ENST00000348968.8:ENST00000446256.6:ENST00000619982.4:ENST00000457607.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	37	2	2.89193	3.7458599999999995	4.59979	0.0109537	0.00950364	0.0873034	0.0863579
chr7	128747552	128747641	3408458	0	+	0.438202	(0.408,0.44]	chr7	318425	1	UTR5	UTR5:EXON_MRNA:INTRON	CALU	ENSG00000128595.17	ENST00000535011.6:ENST00000542996.6:ENST00000249364.9:ENST00000449187.6:ENST00000479257.5	protein_coding	protein_coding	protein_coding	protein_coding	1	37	2	2.89193	3.7458599999999995	4.59979	0.0109537	0.00950364	0.0873034	0.0863579
chr9	123897908	123898008	4345704	0	-	0.43	(0.408,0.44]	chr9	399137	185	INTRON	INTRON	DENND1A	ENSG00000119522.17	ENST00000373624.6:ENST00000394215.7:ENST00000373620.7:ENST00000373618.1	protein_coding	protein_coding	protein_coding	protein_coding	1	37	2	2.89193	3.7458599999999995	4.59979	0.0109537	0.00950364	0.0873034	0.0863579
chrX	153933033	153933084	7911783	0	-	0.411765	(0.408,0.44]	chrX	805330	2	SS3_PROX	SS3_PROX:INTRON	ARHGAP4:NAA10	ENSG00000089820.16:ENSG00000102030.16	ENST00000494813.5:ENST00000464845.6:ENST00000370015.8:ENST00000393712.7:ENST00000370009.5:ENST00000466877.5:ENST00000460996.5:ENST00000370011.7:ENST00000432089.1:ENST00000477750.5:ENST00000393710.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	37	2	2.89193	3.7458599999999995	4.59979	0.0109537	0.00950364	0.0873034	0.0863579
chr7	50772663	50772763	3532473	0	-	0.31	(0.28,0.32]	chr7	329523	103	INTRON	INTRON	GRB10	ENSG00000106070.20	ENST00000335866.7:ENST00000401949.6:ENST00000644769.1:ENST00000644879.1:ENST00000402497.6:ENST00000407526.6:ENST00000645075.2:ENST00000439044.7:ENST00000644716.1:ENST00000483819.1:ENST00000470992.5:ENST00000492265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	57	2	2.33771	3.7456449999999997	5.15358	0.0142701	0.0052282	0.103838	0.0633615
chr4	10103098	10103197	2107288	0	-	0.59596	(0.57,1]	chr4	208480	36	INTRON	INTRON	WDR1	ENSG00000071127.17	ENST00000499869.7:ENST00000382451.6:ENST00000382452.6:ENST00000502702.5:ENST00000508079.1:ENST00000264785.11:ENST00000505851.5:ENST00000514319.5:ENST00000515018.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	108	2	2.84358	3.745625	4.64767	8.01191e-6	2.84519e-7	0.00213899	2.65117e-4
chr11	62671146	62671239	4960534	0	-	0.290323	(0.28,0.32]	chr11	466657	13	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	LBHD1	ENSG00000162194.13	ENST00000354588.8:ENST00000431002.6:ENST00000532208.5:ENST00000415855.6:ENST00000527679.5:ENST00000524759.1:ENST00000528862.2:ENST00000377954.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	77	2	2.9689	3.745615	4.52233	0.0129279	0.00194987	0.0990564	0.0400465
chr10	32309629	32309729	4591269	0	-	0.43	(0.408,0.44]	chr10	423379	33	INTRON	INTRON	EPC1	ENSG00000120616.16	ENST00000375110.6:ENST00000319778.11:ENST00000667706.1:ENST00000263062.8:ENST00000479380.2:ENST00000495790.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	37	2	2.66579	3.745545	4.8253	0.019342	0.0056738	0.119831	0.0653997
chr2	10176527	10176626	691269	0	+	0.414141	(0.408,0.44]	chr2	81109	204	INTRON	INTRON	RRM2	ENSG00000171848.16	ENST00000641498.1:ENST00000381786.7	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	1	37	2	2.66579	3.745545	4.8253	0.019342	0.0056738	0.119831	0.0653997
chr3	47689286	47689386	1684137	0	-	0.43	(0.408,0.44]	chr3	172048	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	SMARCC1	ENSG00000173473.11	ENST00000254480.10:ENST00000425518.5:ENST00000462198.5:ENST00000485737.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	37	2	2.66579	3.745545	4.8253	0.019342	0.0056738	0.119831	0.0653997
chr4	184691274	184691367	2087195	0	+	0.408602	(0.408,0.44]	chr4	206365	4	SS3_PROX	SS3_PROX:INTRON	PRIMPOL	ENSG00000164306.11	ENST00000515774.5:ENST00000503752.5:ENST00000512834.5:ENST00000314970.11:ENST00000509002.5:ENST00000508001.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	37	2	2.66579	3.745545	4.8253	0.019342	0.0056738	0.119831	0.0653997
chr3	9406639	9406738	1358974	0	+	0.282828	(0.28,0.32]	chr3	142655	83	INTRON	INTRON	SETD5	ENSG00000168137.20	ENST00000402198.7:ENST00000431285.5:ENST00000683012.1:ENST00000463180.5:ENST00000478475.5:ENST00000415650.5:ENST00000682536.1:ENST00000663774.1:ENST00000665872.1:ENST00000666307.1:ENST00000693430.1:ENST00000691925.1:ENST00000684606.1:ENST00000691175.1:ENST00000688835.1:ENST00000683262.1:ENST00000443339.5:ENST00000406341.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	47	2	2.73077	3.74554	4.76031	0.0220748	0.00656106	0.115395	0.0735539
chr21	33523913	33524008	7441199	0	-	0.389474	(0.378,0.408]	chr21	759441	13	INTRON	INTRON	GART	ENSG00000159131.17	ENST00000381839.7:ENST00000381831.7:ENST00000424203.5:ENST00000381815.9:ENST00000460305.1:ENST00000467575.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	53	2	1.89621	3.745515	5.59482	0.0488044	4.23783e-4	0.173377	0.0189958
chr3	47091913	47092012	1680870	0	-	0.30303	(0.28,0.32]	chr3	171569	33	INTRON	INTRON	SETD2	ENSG00000181555.22	ENST00000691544.1:ENST00000638947.2:ENST00000686876.1:ENST00000431180.5:ENST00000409792.4:ENST00000330022.11:ENST00000686773.1:ENST00000685005.1:ENST00000690461.1:ENST00000685505.1:ENST00000692883.1:ENST00000693321.1:ENST00000688290.1:ENST00000691902.1:ENST00000690157.1:ENST00000692362.1:ENST00000685237.1:ENST00000445387.5:ENST00000685399.1:ENST00000484689.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	57	2	2.1895	3.7455149999999997	5.30153	0.0227063	0.00332518	0.124921	0.0512081
chr10	96931217	96931316	4503961	0	+	0.40404	(0.378,0.408]	chr10	414561	231	INTRON	INTRON	LCOR	ENSG00000196233.14	ENST00000676067.1:ENST00000676257.1:ENST00000676187.1:ENST00000675151.1:ENST00000675687.1:ENST00000675251.1:ENST00000676123.1:ENST00000371103.8:ENST00000675471.1:ENST00000421806.4:ENST00000675902.1:ENST00000540664.6:ENST00000676414.1:ENST00000675537.1:ENST00000675117.1:ENST00000675125.1:ENST00000356016.7:ENST00000371097.8:ENST00000676381.1:ENST00000674796.1:ENST00000674725.1:ENST00000675971.1:ENST00000676373.1:ENST00000493486.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	38	2	2.54849	3.745495	4.9425	0.0273196	0.00452675	0.136494	0.0595107
chr14	81321307	81321406	5936530	0	-	0.383838	(0.378,0.408]	chr14	564203	142	INTRON	INTRON	STON2	ENSG00000140022.14	ENST00000553821.3:ENST00000614646.5:ENST00000555447.5:ENST00000649389.1:ENST00000652748.1:ENST00000556280.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	38	2	2.54849	3.745495	4.9425	0.0273196	0.00452675	0.136494	0.0595107
chr14	103387884	103387983	5825643	0	+	0.40404	(0.378,0.408]	chr14	552777	11	INTRON	INTRON	MARK3	ENSG00000075413.19	ENST00000678179.1:ENST00000676838.1:ENST00000677348.1:ENST00000677404.1:ENST00000676694.1:ENST00000676938.1:ENST00000678619.1:ENST00000676897.1:ENST00000677214.1:ENST00000677942.1:ENST00000676830.1:ENST00000678999.1:ENST00000677228.1:ENST00000556744.2:ENST00000677104.1:ENST00000679330.1:ENST00000560417.6:ENST00000440884.7:ENST00000676475.1:ENST00000677035.1:ENST00000678022.1:ENST00000677560.1:ENST00000561314.6:ENST00000429436.7:ENST00000677118.1:ENST00000676564.1:ENST00000678169.1:ENST00000678175.1:ENST00000678897.1:ENST00000678278.1:ENST00000676645.1:ENST00000677829.1:ENST00000678302.1:ENST00000677133.1:ENST00000561164.2:ENST00000558223.6:ENST00000559328.6:ENST00000678207.1:ENST00000677360.1:ENST00000676905.1:ENST00000678343.1:ENST00000677347.1:ENST00000678071.1:ENST00000677432.1:ENST00000678237.1:ENST00000677604.1:ENST00000676518.1:ENST00000677051.1:ENST00000677857.1:ENST00000677869.1:ENST00000678423.1:ENST00000560603.6:ENST00000416682.6:ENST00000303622.13:ENST00000216288.11:ENST00000679105.1:ENST00000553942.5:ENST00000335102.9:ENST00000561225.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	76	2	2.54736	3.74493	4.9425	0.00452675	8.3709e-4	0.0595107	0.0263691
chr2	148050155	148050255	887041	0	+	0.39	(0.378,0.408]	chr2	98619	54	INTRON	INTRON	MBD5	ENSG00000204406.14	ENST00000407073.5:ENST00000488372.5:ENST00000496158.5:ENST00000642680.2:ENST00000638130.1:ENST00000637308.1:ENST00000473478.5:ENST00000635796.1:ENST00000637997.1:ENST00000470063.5:ENST00000638043.2:ENST00000638090.1:ENST00000637445.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	51	2	2.61188	3.7447500000000002	4.87762	0.00553849	0.0047055	0.0648867	0.0631419
chr16	7924970	7925070	6439757	0	-	0.36	(0.35,0.378]	chr16	620339	302	INTRON	INTRON	ENSG00000260289	ENSG00000260289.2	ENST00000670665.1:ENST00000654046.1:ENST00000567103.2	lncRNA	lncRNA	lncRNA	lncRNA	1	42	2	2.66547	3.74462	4.82377	0.0233639	0.00325499	0.118323	0.0524329
chr2	97239865	97239965	832163	0	+	0.27	[0,0.28]	chr2	93233	56	INTRON	INTRON	ANKRD36	ENSG00000135976.21	ENST00000420699.9:ENST00000652721.1:ENST00000461153.7:ENST00000421946.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	115	2	3.60019	3.7445500000000003	3.88891	0.00172089	2.88288e-4	0.0374701	0.0150627
chr1	246923258	246923358	681876	0	-	0.5	(0.476,0.515]	chr1	80043	45	INTRON	INTRON	AHCTF1	ENSG00000153207.16	ENST00000648844.2:ENST00000326225.3:ENST00000366508.5	protein_coding	protein_coding	protein_coding	protein_coding	1	39	2	2.28264	3.744545	5.20645	0.0534132	0.00136049	0.179876	0.0336321
chr16	67865729	67865824	6368610	0	+	0.515789	(0.515,0.57]	chr16	611910	1	INTRON	INTRON	NUTF2	ENSG00000102898.12	ENST00000568390.5:ENST00000219169.9:ENST00000567105.5:ENST00000568233.5:ENST00000569436.6:ENST00000568396.2:ENST00000570026.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	37	2	3.09002	3.74451	4.399	0.00708863	0.00491099	0.0754923	0.0609494
chr19	10187550	10187650	7134806	0	-	0.53	(0.515,0.57]	chr19	719261	31	INTRON	INTRON	DNMT1	ENSG00000130816.17	ENST00000340748.8:ENST00000359526.9:ENST00000592705.5:ENST00000679103.1:ENST00000677634.1:ENST00000676820.1:ENST00000677250.1:ENST00000677013.1:ENST00000677685.1:ENST00000676610.1:ENST00000678804.1:ENST00000679313.1:ENST00000677946.1:ENST00000586988.5:ENST00000588952.5:ENST00000588118.5:ENST00000592342.5:ENST00000592054.5:ENST00000586800.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	37	2	3.09002	3.74451	4.399	0.00708863	0.00491099	0.0754923	0.0609494
chr6	143438389	143438489	3242244	0	-	0.35	(0.32,0.35]	chr6	301145	4	SS5_PROX	SS5_PROX:INTRON	ADAT2	ENSG00000189007.16	ENST00000237283.9:ENST00000606514.5	protein_coding	protein_coding	protein_coding	protein_coding	2	54	2	2.30476	3.744455	5.18415	0.0151817	0.00333629	0.108535	0.0512081
chr2	85010735	85010835	820659	0	+	0.34	(0.32,0.35]	chr2	91419	381	INTRON	INTRON	KCMF1	ENSG00000176407.18	ENST00000456682.1:ENST00000409785.9:ENST00000428691.5:ENST00000453448.1	protein_coding	protein_coding	protein_coding	protein_coding	1	45	2	2.84812	3.7442900000000003	4.64046	0.0147575	0.00724767	0.0983813	0.0756327
chr16	3676688	3676774	6434056	0	-	0.616279	(0.57,1]	chr16	619329	4	EXON_LNCRNA	EXON_LNCRNA:INTRON	TRAP1	ENSG00000126602.11	ENST00000246957.10:ENST00000538171.5:ENST00000575671.5:ENST00000573872.5:ENST00000576335.5:ENST00000574175.1:ENST00000575854.5:ENST00000576788.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	127	2	3.7199	3.744225	3.76855	6.02159e-7	6.81429e-8	4.21585e-4	1.10872e-4
chr4	55423014	55423113	1960870	0	+	0.444444	(0.44,0.476]	chr4	196577	45	INTRON	INTRON	TMEM165	ENSG00000134851.13	ENST00000381334.10:ENST00000506198.5:ENST00000508404.5:ENST00000514904.5:ENST00000508561.5:ENST00000608091.1:ENST00000509575.1:ENST00000506103.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	109	2	3.11801	3.74419	4.37037	6.56773e-4	8.53106e-6	0.0233791	0.00210871
chr11	62125359	62125459	4797887	0	+	0.47	(0.44,0.476]	chr11	444466	8	INTRON	INTRON	INCENP	ENSG00000149503.13	ENST00000278849.4:ENST00000533896.5:ENST00000394818.8:ENST00000528037.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	53	2	2.13779	3.744055	5.35032	0.0264596	3.02713e-4	0.122506	0.0155054
chr2	46442370	46442470	769604	0	+	0.27	[0,0.28]	chr2	86881	6	INTRON	INTRON	ENSG00000284608	ENSG00000284608.1	ENST00000432241.5	lncRNA	lncRNA	lncRNA	lncRNA	2	116	2	3.36489	3.7439649999999998	4.12304	0.00388509	9.55979e-5	0.0544269	0.00822576
chr11	64768786	64768853	4965198	0	-	0.38806	(0.378,0.408]	chr11	467507	1	SS5_PROX	SS5_PROX:INTRON	SF1	ENSG00000168066.21	ENST00000334944.9:ENST00000227503.13:ENST00000377394.7:ENST00000448404.5:ENST00000377390.8:ENST00000377387.5:ENST00000681407.1:ENST00000433274.6:ENST00000486867.1:ENST00000489544.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	39	2	3.17089	3.74394	4.31699	0.0250408	0.00357279	0.12011	0.0548435
chr2	230658446	230658546	1341688	0	-	0.41	(0.408,0.44]	chr2	140484	3	SS3_PROX	SS3_PROX:INTRON	ENSG00000289157	ENSG00000289157.1	ENST00000690566.1	lncRNA	lncRNA	lncRNA	lncRNA	1	39	2	2.2957	3.74386	5.19202	0.0516458	0.0016671	0.176696	0.0369207
chr1	65551071	65551171	138496	0	+	0.42	(0.408,0.44]	chr1	15499	249	INTRON	INTRON	LEPR	ENSG00000116678.20	ENST00000371060.7:ENST00000371059.7:ENST00000349533.11:ENST00000616738.4:ENST00000344610.12:ENST00000462765.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	54	2	2.36185	3.743765	5.12568	0.0133164	7.90919e-4	0.094512	0.0258324
chr12	46185523	46185621	5315667	0	-	0.428571	(0.408,0.44]	chr12	505649	26	UTR3	UTR3:EXON_MRNA	SLC38A1	ENSG00000111371.16	ENST00000398637.10	protein_coding	protein_coding	protein_coding	protein_coding	2	54	2	2.36185	3.743765	5.12568	0.0133164	7.90919e-4	0.094512	0.0258324
chr19	7936442	7936541	7130253	0	-	0.414141	(0.408,0.44]	chr19	718334	8	INTRON	INTRON	TIMM44	ENSG00000104980.8	ENST00000270538.8:ENST00000595831.5:ENST00000595876.5:ENST00000597926.1:ENST00000600748.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	132	2	2.95007	3.743585	4.5371	3.86745e-4	2.94395e-6	0.0182867	0.0011002
chr16	648284	648379	6273240	0	+	0.578947	(0.57,1]	chr16	598799	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	MCRIP2	ENSG00000172366.20	ENST00000611328.4:ENST00000307650.9:ENST00000491999.5:ENST00000474840.5:ENST00000615744.4:ENST00000620462.4:ENST00000619674.1:ENST00000575894.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	97	2	2.87603	3.74358	4.61113	1.20654e-5	4.61904e-7	0.00257826	3.89551e-4
chrX	134491664	134491760	7724389	0	+	0.322917	(0.32,0.35]	chrX	790178	11	INTRON	INTRON	HPRT1	ENSG00000165704.15	ENST00000298556.8:ENST00000462974.5:ENST00000475720.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	54	2	2.35591	3.74357	5.13123	0.0128129	0.00394704	0.0990564	0.0548259
chr1	26708828	26708927	51299	0	+	0.515152	(0.476,0.515]	chr1	6542	109	INTRON	INTRON	ARID1A	ENSG00000117713.21	ENST00000430799.7:ENST00000324856.13:ENST00000637465.1:ENST00000457599.6	protein_coding	protein_coding	protein_coding	protein_coding	4	68	2	1.78315	3.74348	5.70381	0.0215899	1.75496e-4	0.123836	0.01216
chr1	21753910	21754007	396572	0	-	0.556701	(0.515,0.57]	chr1	47332	4	INTRON	INTRON	USP48	ENSG00000090686.16	ENST00000400301.5:ENST00000308271.14:ENST00000529637.5:ENST00000421625.6:ENST00000527823.5:ENST00000532737.1	protein_coding	protein_coding	protein_coding	protein_coding	3	98	2	2.804	3.7432799999999995	4.68256	0.00215855	6.92492e-7	0.0417866	4.6078e-4
chr11	129887997	129888093	5051821	0	-	0.427083	(0.408,0.44]	chr11	476759	12	INTRON	INTRON	NFRKB	ENSG00000170322.15	ENST00000682444.1:ENST00000446488.7:ENST00000524794.5:ENST00000524746.5:ENST00000531755.5:ENST00000530278.5:ENST00000529319.5:ENST00000532225.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	40	2	2.36073	3.743205	5.12568	0.0481658	7.90919e-4	0.153019	0.0258324
chr12	43771292	43771365	5119721	0	+	0.424658	(0.408,0.44]	chr12	483046	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	IRAK4	ENSG00000198001.16	ENST00000440781.6:ENST00000550615.5:ENST00000550616.5:ENST00000613694.5:ENST00000547521.5:ENST00000547101.5:ENST00000550386.5:ENST00000551736.5:ENST00000552309.5:ENST00000696790.1:ENST00000696791.1:ENST00000550361.1:ENST00000696794.1:ENST00000696795.1:ENST00000696796.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	40	2	2.36073	3.743205	5.12568	0.0481658	7.90919e-4	0.153019	0.0258324
chr2	31973395	31973495	1090745	0	-	0.42	(0.408,0.44]	chr2	116913	102	INTRON	INTRON	MEMO1:DPY30	ENSG00000162959.14:ENSG00000162961.14	ENST00000295065.9:ENST00000446765.5:ENST00000404530.6:ENST00000490459.5:ENST00000426310.6:ENST00000413686.1:ENST00000407893.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	146	2	3.49775	3.74317	3.98859	1.03669e-4	2.7983e-6	0.00915599	0.00107271
chr10	17666313	17666413	4399488	0	+	0.25	[0,0.28]	chr10	406156	54	INTRON	INTRON	STAM	ENSG00000136738.15	ENST00000377524.8:ENST00000377500.1:ENST00000445846.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	79	2	2.42871	3.7430950000000003	5.05748	0.0113653	0.00461175	0.0886611	0.0626113
chr1	77647343	77647443	493110	0	-	0.5	(0.476,0.515]	chr1	58315	53	INTRON	INTRON	ZZZ3	ENSG00000036549.13	ENST00000370801.8:ENST00000370798.5:ENST00000433749.5:ENST00000414381.5:ENST00000463166.5:ENST00000469944.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	81	2	3.49587	3.7430149999999998	3.99016	0.00120011	7.96444e-5	0.0315806	0.00742553
chr19	54204387	54204486	7098868	0	+	0.494949	(0.476,0.515]	chr19	711940	24	INTRON	INTRON	RPS9	ENSG00000170889.14	ENST00000484121.5:ENST00000448962.5:ENST00000302907.9:ENST00000626547.2:ENST00000436445.5:ENST00000391752.5:ENST00000402367.5:ENST00000445961.5:ENST00000391751.7:ENST00000495002.5:ENST00000391753.6:ENST00000441429.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	260	2	3.05841	3.74298	4.42755	4.54034e-5	3.45348e-8	0.00547944	6.88568e-5
chr11	206324	206415	4887930	0	-	0.494505	(0.476,0.515]	chr11	457296	3	SS3_PROX	SS3_PROX:INTRON	BET1L	ENSG00000177951.18	ENST00000410108.5:ENST00000382762.8:ENST00000325147.13:ENST00000529614.6:ENST00000332865.10:ENST00000486280.1:ENST00000479463.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	39	2	2.56033	3.7428100000000004	4.92529	0.0287634	0.00180221	0.127066	0.0392772
chr15	43482715	43482814	6161744	0	-	0.484848	(0.476,0.515]	chr15	586788	13	INTRON	INTRON	TP53BP1	ENSG00000067369.14	ENST00000382044.9:ENST00000263801.7:ENST00000382039.7:ENST00000450115.6:ENST00000572085.5:ENST00000413546.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	39	2	2.56033	3.7428100000000004	4.92529	0.0287634	0.00180221	0.127066	0.0392772
chr17	19240222	19240322	6570765	0	+	0.49	(0.476,0.515]	chr17	638928	23	INTRON	INTRON	EPN2	ENSG00000072134.16	ENST00000582015.5:ENST00000584707.5:ENST00000584633.1:ENST00000441293.2:ENST00000314728.10:ENST00000347697.6:ENST00000395618.7:ENST00000580579.5:ENST00000577692.5:ENST00000583197.5:ENST00000582659.5:ENST00000395628.6:ENST00000575595.5:ENST00000494192.6:ENST00000582234.5:ENST00000581024.5:ENST00000577244.5:ENST00000582969.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	39	2	2.56033	3.7428100000000004	4.92529	0.0287634	0.00180221	0.127066	0.0392772
chr3	171435327	171435427	1867201	0	-	0.49	(0.476,0.515]	chr3	186991	653	INTRON	INTRON	TNIK	ENSG00000154310.17	ENST00000436636.7:ENST00000341852.10:ENST00000284483.12:ENST00000475336.5:ENST00000357327.9:ENST00000460047.5:ENST00000488470.5:ENST00000470834.5:ENST00000465393.1	protein_coding	protein_coding	protein_coding	protein_coding	1	39	2	2.56033	3.7428100000000004	4.92529	0.0287634	0.00180221	0.127066	0.0392772
chr3	185784078	185784178	1885939	0	-	0.51	(0.476,0.515]	chr3	188573	854	INTRON	INTRON	IGF2BP2	ENSG00000073792.16	ENST00000382199.7:ENST00000346192.7:ENST00000457616.6:ENST00000421047.3:ENST00000461957.5:ENST00000493302.5:ENST00000466476.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	39	2	2.56033	3.7428100000000004	4.92529	0.0287634	0.00180221	0.127066	0.0392772
chr5	98924736	98924836	2684032	0	-	0.5	(0.476,0.515]	chr5	253957	193	INTRON	INTRON	CHD1	ENSG00000153922.11	ENST00000614616.5:ENST00000284049.7	protein_coding	protein_coding	protein_coding	protein_coding	1	39	2	2.56033	3.7428100000000004	4.92529	0.0287634	0.00180221	0.127066	0.0392772
chr6	28605827	28605927	3075255	0	-	0.28	[0,0.28]	chr6	285910	79	INTRON	INTRON	ZBED9	ENSG00000232040.4	ENST00000530247.1:ENST00000524745.2	protein_coding	processed_transcript	protein_coding	processed_transcript	3	76	2	2.22743	3.74279	5.25815	0.0097118	0.0066548	0.0875962	0.0703807
chr1	15570448	15570547	33253	0	+	0.40404	(0.378,0.408]	chr1	4063	24	UTR3	UTR3:EXON_MRNA:INTRON	DNAJC16	ENSG00000116138.13	ENST00000375849.5:ENST00000475133.5:ENST00000616884.4:ENST00000375847.8:ENST00000483270.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	39	2	2.36428	3.7427799999999998	5.12128	0.0441088	0.00251746	0.162255	0.0446195
chr11	47762887	47762986	4951372	0	-	0.40404	(0.378,0.408]	chr11	464446	79	INTRON	INTRON	FNBP4	ENSG00000109920.13	ENST00000263773.10:ENST00000534003.5:ENST00000540172.2:ENST00000542975.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	39	2	2.36428	3.7427799999999998	5.12128	0.0441088	0.00251746	0.162255	0.0446195
chr9	130082465	130082564	4211245	0	+	0.434343	(0.408,0.44]	chr9	386017	23	INTRON	INTRON	GPR107	ENSG00000148358.20	ENST00000372406.5:ENST00000372410.7:ENST00000347136.11:ENST00000493417.5:ENST00000610997.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	40	2	2.78122	3.74266	4.7041	0.015812	0.00381677	0.101453	0.0562562
chr3	172329368	172329466	1562462	0	+	0.326531	(0.32,0.35]	chr3	161617	4	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000469491.5:ENST00000336824.8:ENST00000416957.5:ENST00000494000.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	55	2	2.58753	3.742605	4.89768	0.00793135	0.00560122	0.076155	0.0678837
chr6	163533481	163533581	3032900	0	+	0.34	(0.32,0.35]	chr6	282586	542	INTRON	INTRON	QKI	ENSG00000112531.17	ENST00000361758.8:ENST00000453779.6:ENST00000275262.11:ENST00000392127.6:ENST00000361752.8:ENST00000361195.6:ENST00000424802.7:ENST00000545607.5:ENST00000544436.5:ENST00000537041.5:ENST00000545346.1:ENST00000544823.5:ENST00000537883.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	55	2	2.58753	3.742605	4.89768	0.00793135	0.00560122	0.076155	0.0678837
chr13	27255691	27255773	5459421	0	+	0.487805	(0.476,0.515]	chr13	523103	3	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPL21	ENSG00000122026.11	ENST00000311549.11:ENST00000461690.5:ENST00000272274.8:ENST00000319826.8:ENST00000326092.8:ENST00000493317.1:ENST00000483765.5:ENST00000466550.1:ENST00000485756.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	61	2	1.74317	3.74236	5.74155	0.0396373	1.47804e-4	0.161534	0.0111067
chr1	201989831	201989931	292579	0	+	0.47	(0.44,0.476]	chr1	33705	3	SS5_PROX	SS5_PROX:INTRON	RNPEP	ENSG00000176393.11	ENST00000481780.5:ENST00000295640.9:ENST00000367286.7:ENST00000487116.5:ENST00000492587.5:ENST00000471105.5:ENST00000447312.5:ENST00000478617.5:ENST00000479726.5:ENST00000492849.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	132	2	3.11411	3.7422400000000002	4.37037	1.6068e-4	8.53106e-6	0.0116076	0.00210871
chr1	40263677	40263775	80831	0	+	0.336735	(0.32,0.35]	chr1	10473	3	INTRON	INTRON	ZMPSTE24	ENSG00000084073.10	ENST00000675937.1:ENST00000674703.1:ENST00000372759.4:ENST00000675754.1:ENST00000472583.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	44	2	2.68921	3.742015	4.79482	0.0230336	0.00447781	0.118056	0.0610799
chr2	75960363	75960463	817763	0	+	0.33	(0.32,0.35]	chr2	91391	875	INTRON	INTRON	ENSG00000287474	ENSG00000287474.1	ENST00000670606.1	lncRNA	lncRNA	lncRNA	lncRNA	1	44	2	2.68921	3.742015	4.79482	0.0230336	0.00447781	0.118056	0.0610799
chr5	141534034	141534134	2739306	0	-	0.31	(0.28,0.32]	chr5	258059	3	SS5_PROX	SS5_PROX:INTRON	DIAPH1	ENSG00000131504.18	ENST00000647433.1:ENST00000389054.8:ENST00000518047.5:ENST00000491754.5:ENST00000494967.5:ENST00000518484.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	140	2	3.63276	3.74198	3.8512	0.00114475	1.38386e-5	0.0308149	0.00277484
chr1	231255528	231255628	337164	0	+	0.43	(0.408,0.44]	chr1	39184	40	INTRON	INTRON	GNPAT	ENSG00000116906.13	ENST00000436239.5:ENST00000366647.9:ENST00000644483.1:ENST00000416000.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	41	2	2.95296	3.74192	4.53088	0.00929354	0.00669275	0.0817766	0.0738715
chr12	112495263	112495363	5230581	0	+	0.43	(0.408,0.44]	chr12	495914	41	INTRON	INTRON	PTPN11	ENSG00000179295.19	ENST00000688597.1:ENST00000692624.1:ENST00000685487.1:ENST00000690210.1:ENST00000639857.2:ENST00000687906.1:ENST00000351677.7:ENST00000635625.1:ENST00000690472.1:ENST00000688701.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	41	2	2.95296	3.74192	4.53088	0.00929354	0.00669275	0.0817766	0.0738715
chr9	132492	132591	4226818	0	-	0.434343	(0.408,0.44]	chr9	388544	87	INTRON	INTRON	CBWD1	ENSG00000172785.19	ENST00000356521.9:ENST00000377400.8:ENST00000475990.5:ENST00000619157.4:ENST00000314367.14:ENST00000612045.4:ENST00000475411.5:ENST00000611457.4:ENST00000465014.6:ENST00000613508.4:ENST00000382447.8:ENST00000487575.6:ENST00000495302.5:ENST00000462513.5:ENST00000616944.4:ENST00000613355.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	41	2	2.95296	3.74192	4.53088	0.00929354	0.00669275	0.0817766	0.0738715
chr6	135026653	135026753	3225185	0	-	0.24	[0,0.28]	chr6	299838	4	SS5_PROX	SS5_PROX:INTRON	HBS1L	ENSG00000112339.15	ENST00000367837.10:ENST00000527578.5:ENST00000415177.6:ENST00000367826.6:ENST00000533274.5:ENST00000526100.5:ENST00000529641.5:ENST00000527507.1:ENST00000314674.7:ENST00000524715.5:ENST00000529882.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	95	2	1.50357	3.7417599999999998	5.97995	0.0436989	6.65031e-4	0.162255	0.023496
chr16	11893967	11894064	6446182	0	-	0.463918	(0.44,0.476]	chr16	621104	25	INTRON	INTRON	GSPT1	ENSG00000103342.13	ENST00000434724.7:ENST00000439887.6:ENST00000565267.5:ENST00000563468.5:ENST00000420576.6:ENST00000568849.5:ENST00000567631.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	40	2	2.29842	3.741615	5.18481	0.0552483	6.21872e-4	0.165463	0.0223951
chr11	70352909	70353008	4821265	0	+	0.292929	(0.28,0.32]	chr11	449509	15	INTRON	INTRON	PPFIA1	ENSG00000131626.19	ENST00000253925.12:ENST00000389547.7:ENST00000532504.5:ENST00000648755.1:ENST00000644155.1:ENST00000526262.5:ENST00000530798.5:ENST00000526347.5:ENST00000530294.5:ENST00000526074.5:ENST00000528750.1:ENST00000533894.5:ENST00000530390.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	43	2	2.97333	3.74157	4.50981	0.0275554	0.00857834	0.123904	0.083729
chr17	2633885	2633985	6547840	0	+	0.29	(0.28,0.32]	chr17	635219	197	INTRON	INTRON	PAFAH1B1	ENSG00000007168.14	ENST00000576586.5:ENST00000397195.10:ENST00000676201.1:ENST00000575477.5:ENST00000675621.1:ENST00000676353.1:ENST00000674717.1:ENST00000675202.1:ENST00000675764.1:ENST00000674608.1:ENST00000676077.1:ENST00000676098.1:ENST00000572915.6:ENST00000570400.1:ENST00000571289.1:ENST00000675430.1:ENST00000675331.1:ENST00000676188.1:ENST00000574816.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	43	2	2.97333	3.74157	4.50981	0.0275554	0.00857834	0.123904	0.083729
chr2	110672260	110672360	1206810	0	-	0.32	(0.28,0.32]	chr2	128721	2	SS5_PROX	SS5_PROX:INTRON	BUB1	ENSG00000169679.15	ENST00000302759.11:ENST00000535254.6:ENST00000409311.5:ENST00000466333.5:ENST00000666956.1:ENST00000465029.5:ENST00000447014.5:ENST00000420328.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	43	2	2.97333	3.74157	4.50981	0.0275554	0.00857834	0.123904	0.083729
chr7	140839726	140839826	3662882	0	-	0.3	(0.28,0.32]	chr7	340099	36	INTRON	INTRON	BRAF	ENSG00000157764.14	ENST00000496384.7:ENST00000644969.2:ENST00000646891.1:ENST00000644905.1:ENST00000642228.1:ENST00000288602.11:ENST00000646730.1:ENST00000497784.2:ENST00000642272.1:ENST00000642808.1:ENST00000643790.1:ENST00000469930.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	43	2	2.97333	3.74157	4.50981	0.0275554	0.00857834	0.123904	0.083729
chr12	101717236	101717317	5203212	0	+	0.37037	(0.35,0.378]	chr12	492683	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS5_PROX:INTRON	CHPT1	ENSG00000111666.11	ENST00000550385.1:ENST00000229266.8:ENST00000549872.5:ENST00000552351.5:ENST00000549128.5:ENST00000552215.5:ENST00000552329.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	69	2	1.6122	3.7414899999999998	5.87078	0.0616849	3.6006e-5	0.174021	0.00481059
chr1	23041708	23041808	43981	0	+	0.42	(0.408,0.44]	chr1	5258	107	INTRON	INTRON	KDM1A	ENSG00000004487.18	ENST00000692214.1:ENST00000686934.1:ENST00000689853.1:ENST00000465864.2:ENST00000691256.1:ENST00000688122.1:ENST00000692056.1:ENST00000692853.1:ENST00000689366.1:ENST00000686270.1:ENST00000685102.1:ENST00000690627.1:ENST00000686771.1:ENST00000692209.1:ENST00000686339.1:ENST00000691813.1:ENST00000693156.1:ENST00000688235.1:ENST00000692975.1:ENST00000687202.1:ENST00000691682.1:ENST00000691404.1:ENST00000691694.1:ENST00000688680.1:ENST00000356634.7:ENST00000400181.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	55	2	3.05533	3.74123	4.42713	0.0173083	6.50769e-4	0.104099	0.0231135
chr6	15075740	15075839	3063693	0	-	0.50505	(0.476,0.515]	chr6	284666	222	INTRON	INTRON	ENSG00000234261	ENSG00000234261.5	ENST00000653525.1:ENST00000656468.1:ENST00000656344.1:ENST00000437648.1:ENST00000656807.1	lncRNA	lncRNA	lncRNA	lncRNA	1	41	2	3.05152	3.741225	4.43093	0.00931369	0.0064848	0.0855292	0.0699952
chr6	15042641	15042740	3063359	0	-	0.393939	(0.378,0.408]	chr6	284657	208	INTRON	INTRON	ENSG00000234261	ENSG00000234261.5	ENST00000653525.1:ENST00000656468.1:ENST00000656344.1:ENST00000437648.1	lncRNA	lncRNA	lncRNA	lncRNA	1	41	2	2.30961	3.74121	5.17281	0.055088	7.27294e-4	0.165463	0.0245647
chr11	48061913	48062013	4790034	0	+	0.47	(0.44,0.476]	chr11	443275	152	INTRON	INTRON	PTPRJ	ENSG00000149177.14	ENST00000418331.7:ENST00000440289.6:ENST00000527952.1:ENST00000534219.5:ENST00000526550.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	81	2	3.65135	3.741025	3.8307	6.34922e-4	1.81621e-4	0.023163	0.0117212
chr1	150346691	150346791	221614	0	+	0.37	(0.35,0.378]	chr1	25029	2	SS5_PROX	SS5_PROX:INTRON	PRPF3	ENSG00000117360.13	ENST00000324862.7:ENST00000467329.5:ENST00000476970.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	52	2	2.49643	3.7410200000000002	4.98561	0.00752974	0.00474226	0.0773151	0.0600445
chr14	81354987	81355087	5936868	0	-	0.31	(0.28,0.32]	chr14	564212	304	INTRON	INTRON	STON2	ENSG00000140022.14	ENST00000553821.3:ENST00000614646.5:ENST00000555447.5:ENST00000649389.1:ENST00000652748.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	43	2	2.38101	3.74085	5.10069	0.0456017	0.00610574	0.164236	0.0676501
chr9	112104881	112104958	4316070	0	-	0.311688	(0.28,0.32]	chr9	396945	3	EXON_LNCRNA	EXON_LNCRNA:INTRON	SUSD1	ENSG00000106868.17	ENST00000374270.8:ENST00000374263.7:ENST00000355396.7:ENST00000374264.6:ENST00000529933.5:ENST00000415074.1:ENST00000528773.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	43	2	2.38101	3.74085	5.10069	0.0456017	0.00610574	0.164236	0.0676501
chr16	11010799	11010899	6288219	0	+	0.37	(0.35,0.378]	chr16	602178	71	INTRON	INTRON	CLEC16A	ENSG00000038532.16	ENST00000409790.6:ENST00000409552.4:ENST00000494853.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	52	2	2.17079	3.740685	5.31058	0.0225978	0.00160599	0.124921	0.0364977
chr10	68735375	68735475	4442407	0	+	0.38	(0.378,0.408]	chr10	409595	124	INTRON	INTRON	CCAR1	ENSG00000060339.14	ENST00000536391.5:ENST00000630771.2:ENST00000538031.5:ENST00000543719.5:ENST00000541012.5:ENST00000265872.11:ENST00000539539.5:ENST00000543229.5:ENST00000536012.5:ENST00000543225.5:ENST00000494903.2:ENST00000540210.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	84	2	3.54406	3.74059	3.93712	0.00110718	1.09377e-4	0.0306086	0.00884858
chr11	11875547	11875646	4735891	0	+	0.333333	(0.32,0.35]	chr11	438603	13	INTRON	INTRON	USP47	ENSG00000170242.19	ENST00000339865.9:ENST00000525257.1:ENST00000527733.7:ENST00000399455.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	54	2	2.19668	3.74059	5.2845	0.021398	0.00240071	0.123719	0.0440612
chr16	23641790	23641890	6323237	0	+	0.5	(0.476,0.515]	chr16	605579	2	SS5_PROX	SS5_PROX:INTRON	DCTN5	ENSG00000166847.10	ENST00000300087.7:ENST00000563998.5:ENST00000566053.5:ENST00000568589.5:ENST00000563188.5:ENST00000568272.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	42	2	3.15202	3.7405850000000003	4.32915	0.0124637	0.00455841	0.0973643	0.0595107
chr1	65289682	65289782	135890	0	+	0.39	(0.378,0.408]	chr1	15346	244	INTRON	INTRON	DNAJC6	ENSG00000116675.16	ENST00000463018.5:ENST00000494710.6:ENST00000263441.11:ENST00000395325.7:ENST00000483402.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	41	2	2.78946	3.740575	4.69169	0.0158859	0.00432302	0.101453	0.0599409
chr15	58041271	58041371	6187297	0	-	0.38	(0.378,0.408]	chr15	589786	28	INTRON	INTRON	ALDH1A2	ENSG00000128918.15	ENST00000537372.5:ENST00000249750.9:ENST00000347587.7:ENST00000430119.6:ENST00000558231.5:ENST00000558595.5:ENST00000558239.5:ENST00000557967.5:ENST00000558073.5:ENST00000559297.5:ENST00000560122.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	41	2	2.78946	3.740575	4.69169	0.0158859	0.00432302	0.101453	0.0599409
chr19	4097188	4097242	7119263	0	-	0.240741	[0,0.28]	chr19	716144	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	MAP2K2	ENSG00000126934.15	ENST00000262948.10:ENST00000689792.1:ENST00000601786.5:ENST00000600584.5:ENST00000394867.9:ENST00000597263.5:ENST00000688002.1:ENST00000599021.1:ENST00000595715.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	50	2	2.38757	3.74019	5.09281	0.0552962	0.00372534	0.165463	0.0561984
chr1	153910575	153910675	557643	0	-	0.49	(0.476,0.515]	chr1	65995	112	INTRON	INTRON	GATAD2B	ENSG00000143614.10	ENST00000368655.5:ENST00000634544.1:ENST00000634408.1:ENST00000634401.1:ENST00000634791.1:ENST00000637331.1:ENST00000636008.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	38	2	3.13389	3.740185	4.34648	0.0193566	0.00405473	0.108861	0.0578376
chr7	39966611	39966711	3310785	0	+	0.48	(0.476,0.515]	chr7	307478	138	INTRON	INTRON	CDK13	ENSG00000065883.17	ENST00000340829.10:ENST00000181839.10:ENST00000613626.4:ENST00000646039.1:ENST00000643859.1	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	3.13389	3.740185	4.34648	0.0193566	0.00405473	0.108861	0.0578376
chr11	666966	667065	4889193	0	-	0.444444	(0.44,0.476]	chr11	457709	68	INTRON	INTRON	DEAF1	ENSG00000177030.19	ENST00000382409.4:ENST00000527170.5:ENST00000685854.1:ENST00000683307.1:ENST00000528864.6:ENST00000525626.6:ENST00000682936.1:ENST00000690068.1:ENST00000692634.1:ENST00000687329.1:ENST00000686001.1:ENST00000689835.1:ENST00000525904.5:ENST00000530813.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	37	2	2.58033	3.740165	4.9	0.0247511	0.00423315	0.131869	0.0572185
chr12	121292659	121292758	5436659	0	-	0.464646	(0.44,0.476]	chr12	519827	85	INTRON	INTRON	CAMKK2	ENSG00000110931.19	ENST00000652382.1:ENST00000404169.8:ENST00000324774.9:ENST00000347034.6:ENST00000538733.5:ENST00000337174.7:ENST00000412367.6:ENST00000402834.8:ENST00000392473.2:ENST00000446440.6:ENST00000535524.1:ENST00000543477.1:ENST00000544485.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	37	2	2.58033	3.740165	4.9	0.0247511	0.00423315	0.131869	0.0572185
chr4	128096590	128096689	2042954	0	+	0.474747	(0.44,0.476]	chr4	202878	47	INTRON	INTRON	LARP1B	ENSG00000138709.19	ENST00000512292.5:ENST00000326639.11:ENST00000508819.5:ENST00000394288.7:ENST00000432347.6:ENST00000649983.1:ENST00000650359.1:ENST00000648358.1:ENST00000507377.1	protein_coding	protein_coding	protein_coding	protein_coding	1	37	2	2.58033	3.740165	4.9	0.0247511	0.00423315	0.131869	0.0572185
chr5	113570337	113570436	2454445	0	+	0.444444	(0.44,0.476]	chr5	235257	21	INTRON	INTRON	YTHDC2	ENSG00000047188.16	ENST00000161863.9:ENST00000506333.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	37	2	2.58033	3.740165	4.9	0.0247511	0.00423315	0.131869	0.0572185
chr9	36653071	36653170	4117286	0	+	0.242424	[0,0.28]	chr9	375312	8	INTRON	INTRON	MELK	ENSG00000165304.8	ENST00000543751.5:ENST00000536860.5:ENST00000541717.4:ENST00000536329.5:ENST00000627766.2:ENST00000298048.7:ENST00000536987.5:ENST00000545008.5:ENST00000626154.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	75	2	1.71402	3.74005	5.76608	0.047753	0.00140074	0.170327	0.0340865
chr7	150284552	150284652	3673260	0	-	0.23	[0,0.28]	chr7	340877	4	SS5_PROX	SS5_PROX:INTRON	ACTR3C	ENSG00000106526.11	ENST00000478393.5:ENST00000683684.1:ENST00000252071.8	protein_coding	protein_coding	protein_coding	protein_coding	3	157	2	2.94608	3.7400349999999998	4.53399	0.00272281	1.13564e-5	0.0467523	0.00249332
chr6	26882354	26882452	3071523	0	-	0.408163	(0.378,0.408]	chr6	285526	32	INTRON	INTRON	GUSBP2	ENSG00000241549.8	ENST00000479900.5:ENST00000463434.5:ENST00000492832.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	2	55	2	1.94681	3.7399	5.53299	0.0457723	1.47095e-4	0.149888	0.0105341
chr7	107073111	107073211	3377451	0	+	0.26	[0,0.28]	chr7	316248	24	INTRON	INTRON	PRKAR2B	ENSG00000005249.13	ENST00000265717.5:ENST00000393613.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	48	2	3.09587	3.73987	4.38387	0.0501911	0.00651565	0.156383	0.0735232
chr8	97693181	97693280	3809554	0	+	0.292929	(0.28,0.32]	chr8	352866	16	INTRON	INTRON	MTDH	ENSG00000147649.10	ENST00000336273.8:ENST00000519934.5:ENST00000519293.1:ENST00000521933.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	46	2	2.39347	3.739845	5.08622	0.0504457	0.00227525	0.156383	0.0437013
chr1	155514927	155515027	562413	0	-	0.44	(0.408,0.44]	chr1	67101	321	INTRON	INTRON	ASH1L	ENSG00000116539.14	ENST00000676814.1:ENST00000392403.8:ENST00000368346.7:ENST00000677213.1:ENST00000678117.1:ENST00000679097.1:ENST00000679333.1:ENST00000677042.1:ENST00000678699.1:ENST00000677825.1:ENST00000679133.1:ENST00000548830.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	38	2	3.14706	3.73972	4.33238	0.0218901	0.00382411	0.11491	0.0562562
chr7	10742997	10743097	3484210	0	-	0.44	(0.408,0.44]	chr7	325772	1811	INTRON	INTRON	MGC4859	ENSG00000283117.1	ENST00000634803.1	lncRNA	lncRNA	lncRNA	lncRNA	1	38	2	3.14706	3.73972	4.33238	0.0218901	0.00382411	0.11491	0.0562562
chr11	61155508	61155607	4955675	0	-	0.292929	(0.28,0.32]	chr11	465541	102	INTRON	INTRON	VPS37C	ENSG00000167987.11	ENST00000301765.10:ENST00000538036.1:ENST00000536000.1:ENST00000535818.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	46	2	2.51488	3.73971	4.96454	0.0380957	0.00344078	0.141678	0.0539802
chr11	68526169	68526269	4817991	0	+	0.31	(0.28,0.32]	chr11	448931	31	INTRON	INTRON	PPP6R3	ENSG00000110075.15	ENST00000530427.5:ENST00000528635.5:ENST00000529907.5:ENST00000533127.5:ENST00000534534.5:ENST00000529344.5:ENST00000524845.5:ENST00000393800.7:ENST00000265637.8:ENST00000524904.5:ENST00000393801.7:ENST00000265636.9:ENST00000529710.5:ENST00000527403.6:ENST00000525050.5:ENST00000527069.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	46	2	2.51488	3.73971	4.96454	0.0380957	0.00344078	0.141678	0.0539802
chr6	157390062	157390162	3011631	0	+	0.29	(0.28,0.32]	chr6	281268	74	INTRON	INTRON	ZDHHC14	ENSG00000175048.17	ENST00000414563.6:ENST00000359775.10	protein_coding	protein_coding	protein_coding	protein_coding	1	46	2	2.51488	3.73971	4.96454	0.0380957	0.00344078	0.141678	0.0539802
chrX	107095128	107095228	7859407	0	-	0.32	(0.28,0.32]	chrX	801235	59	INTRON	INTRON	RBM41	ENSG00000089682.17	ENST00000685964.1:ENST00000372487.5:ENST00000495517.5:ENST00000372479.7:ENST00000434854.1:ENST00000475556.1:ENST00000485676.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	46	2	2.51488	3.73971	4.96454	0.0380957	0.00344078	0.141678	0.0539802
chr4	17995458	17995558	2118036	0	-	0.34	(0.32,0.35]	chr4	209157	222	INTRON	INTRON	LCORL	ENSG00000178177.17	ENST00000635767.2:ENST00000326877.8:ENST00000675131.1:ENST00000675143.1:ENST00000637787.1:ENST00000675605.1:ENST00000510451.5:ENST00000675927.1:ENST00000382224.5:ENST00000382226.5:ENST00000676061.1:ENST00000674942.1:ENST00000512376.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	41	2	2.40308	3.739685	5.07629	0.0417732	0.00468114	0.161736	0.0600108
chr6	29629822	29629898	3076498	0	-	0.394737	(0.378,0.408]	chr6	286106	2	INTRON	INTRON	GABBR1	ENSG00000204681.11	ENST00000472823.5:ENST00000377016.8:ENST00000377034.9:ENST00000491829.5:ENST00000494877.5:ENST00000376977.7:ENST00000485508.5:ENST00000489385.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	55	2	2.30628	3.739545	5.17281	0.0163339	7.27294e-4	0.101571	0.0245647
chr1	227317649	227317743	651713	0	-	0.43617	(0.408,0.44]	chr1	77115	6	UTR5	UTR5:EXON_MRNA	CDC42BPA	ENSG00000143776.20	ENST00000366766.8:ENST00000366769.7:ENST00000334218.9	protein_coding	protein_coding	protein_coding	protein_coding	12	403	2	3.69388	3.739485	3.78509	2.85835e-7	3.33347e-8	2.89133e-4	7.18174e-5
chr9	111911005	111911105	4184593	0	+	0.46	(0.44,0.476]	chr9	381684	133	INTRON	INTRON	UGCG	ENSG00000148154.10	ENST00000374279.4:ENST00000489355.1:ENST00000495085.1:ENST00000490110.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	50	2	2.64669	3.7393549999999998	4.83202	0.00525002	0.0040295	0.0633615	0.0578376
chr12	6969671	6969766	5260990	0	-	0.484211	(0.476,0.515]	chr12	501191	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PHB2	ENSG00000215021.10	ENST00000440277.6:ENST00000678829.1:ENST00000535923.6:ENST00000546111.5:ENST00000676496.1:ENST00000399433.7:ENST00000543465.5:ENST00000677354.1:ENST00000542912.5:ENST00000678983.1:ENST00000678000.1:ENST00000676893.1:ENST00000536316.3:ENST00000545167.5:ENST00000544888.5:ENST00000544134.5:ENST00000546217.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	39	2	2.48527	3.739345	4.99342	0.03496	0.00139274	0.13747500000000001	0.0341261
chr17	31145291	31145391	6591637	0	+	0.5	(0.476,0.515]	chr17	641057	164	INTRON	INTRON	NF1	ENSG00000196712.20	ENST00000696138.1:ENST00000356175.7:ENST00000487476.5:ENST00000691014.1:ENST00000358273.9:ENST00000431387.8:ENST00000579081.5:ENST00000489712.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	39	2	2.48527	3.739345	4.99342	0.03496	0.00139274	0.13747500000000001	0.0341261
chr1	1733411	1733508	361309	0	-	0.484536	(0.476,0.515]	chr1	42116	5	INTRON	INTRON	ENSG00000268575:SLC35E2A	ENSG00000268575.1:ENSG00000215790.8	ENST00000598846.1:ENST00000647043.1:ENST00000475229.2:ENST00000246421.4	lncRNA	lncRNA	lncRNA:transcribed_unprocessed_pseudogene	lncRNA:processed_transcript	1	38	2	2.38442	3.739325	5.09423	0.0417472	0.00204588	0.161736	0.04086
chr1	193025226	193025324	612521	0	-	0.397959	(0.378,0.408]	chr1	72454	9	INTRON	INTRON	UCHL5	ENSG00000116750.14	ENST00000367455.8:ENST00000367454.6:ENST00000420791.5:ENST00000367450.7:ENST00000367451.8:ENST00000367449.5:ENST00000367448.5:ENST00000443327.5:ENST00000421683.1	protein_coding	protein_coding	protein_coding	protein_coding	1	43	2	3.05502	3.739255	4.42349	0.00992961	0.00689519	0.0877296	0.0717484
chr3	15824501	15824601	1624092	0	-	0.26	[0,0.28]	chr3	168034	98	INTRON	INTRON	ANKRD28	ENSG00000206560.12	ENST00000399451.6:ENST00000412318.5:ENST00000439830.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	50	2	2.33055	3.73916	5.14777	0.062338	0.00311898	0.175343	0.0512673
chr7	10456774	10456874	3481346	0	-	0.26	[0,0.28]	chr7	325766	36	INTRON	INTRON	MGC4859	ENSG00000283117.1	ENST00000634803.1	lncRNA	lncRNA	lncRNA	lncRNA	1	50	2	2.33055	3.73916	5.14777	0.062338	0.00311898	0.175343	0.0512673
chr9	130825553	130825653	4214980	0	+	0.27	[0,0.28]	chr9	386427	1107	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000393293.4	protein_coding	protein_coding	protein_coding	protein_coding	1	50	2	2.33055	3.73916	5.14777	0.062338	0.00311898	0.175343	0.0512673
chrX	154786800	154786900	7915416	0	-	0.59	(0.57,1]	chrX	806146	4	SS3_PROX	SS3_PROX:INTRON	MPP1	ENSG00000130830.15	ENST00000369534.8:ENST00000413259.7:ENST00000439370.5:ENST00000393531.5:ENST00000453245.5:ENST00000494170.1:ENST00000462825.5:ENST00000393529.5:ENST00000475943.5:ENST00000428488.1:ENST00000488754.5:ENST00000417435.5:ENST00000488694.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	48	2	3.183	3.7391449999999997	4.29529	0.00254356	4.35224e-6	0.0448135	0.00140234
chr1	207050405	207050496	624943	0	-	0.494505	(0.476,0.515]	chr1	74437	3	SS5_PROX	SS5_PROX:INTRON	YOD1	ENSG00000180667.11	ENST00000367084.1:ENST00000315927.9	protein_coding	protein_coding	protein_coding	protein_coding	1	39	2	2.69967	3.739115	4.77856	0.0195838	0.00305743	0.109483	0.0509893
chr19	888162	888260	7110702	0	-	0.479592	(0.476,0.515]	chr19	714112	16	INTRON	INTRON	MED16	ENSG00000175221.16	ENST00000395808.7:ENST00000312090.10:ENST00000325464.6:ENST00000606248.5:ENST00000586017.5:ENST00000592943.5:ENST00000606828.2:ENST00000592373.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	39	2	2.69967	3.739115	4.77856	0.0195838	0.00305743	0.109483	0.0509893
chr22	50401208	50401307	7544773	0	+	0.50505	(0.476,0.515]	chr22	771041	67	INTRON	INTRON	PPP6R2	ENSG00000100239.16	ENST00000359139.7:ENST00000395741.7:ENST00000612753.5:ENST00000395744.7:ENST00000216061.9	protein_coding	protein_coding	protein_coding	protein_coding	1	39	2	2.69967	3.739115	4.77856	0.0195838	0.00305743	0.109483	0.0509893
chr19	18919122	18919222	7153369	0	-	0.68	(0.57,1]	chr19	723000	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	COPE	ENSG00000105669.14	ENST00000262812.9:ENST00000349893.8:ENST00000600932.5:ENST00000351079.8:ENST00000593827.1:ENST00000597646.5:ENST00000599964.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	39	2	2.07956	3.7391099999999997	5.39866	0.013114	2.7267e-5	0.0998629	0.00430583
chr8	26335149	26335247	3716535	0	+	0.367347	(0.35,0.378]	chr8	345383	12	INTRON	INTRON	PPP2R2A	ENSG00000221914.11	ENST00000380737.8:ENST00000520329.5:ENST00000518254.5:ENST00000524169.5:ENST00000518397.5:ENST00000522535.5:ENST00000665949.1:ENST00000522150.5:ENST00000523473.5:ENST00000521095.5:ENST00000660435.1:ENST00000523925.5:ENST00000524099.5:ENST00000315985.7:ENST00000519636.5:ENST00000522482.5:ENST00000521557.5:ENST00000519439.5:ENST00000521484.5:ENST00000523964.5:ENST00000667651.1:ENST00000657943.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	73	2	2.21686	3.7390550000000005	5.26125	0.00414535	0.00191117	0.0589266	0.03947
chr1	13750785	13750885	31665	0	+	0.27	[0,0.28]	chr1	3857	9	INTRON	INTRON	PRDM2	ENSG00000116731.23	ENST00000311066.10:ENST00000376048.9:ENST00000235372.11:ENST00000491134.5:ENST00000502727.5:ENST00000502724.5:ENST00000413440.5:ENST00000343137.8:ENST00000491815.1:ENST00000503842.5:ENST00000505823.5:ENST00000407521.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	50	2	2.44242	3.7390499999999998	5.03568	0.0491024	0.00446141	0.155269	0.0610799
chr17	82187989	82188089	6852194	0	-	0.27	[0,0.28]	chr17	679038	4	SS5_PROX	SS5_PROX:INTRON	CCDC57	ENSG00000176155.21	ENST00000694881.1:ENST00000389641.9:ENST00000694882.1:ENST00000665763.1:ENST00000578910.2:ENST00000392343.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	50	2	2.44242	3.7390499999999998	5.03568	0.0491024	0.00446141	0.155269	0.0610799
chr17	35084044	35084144	6757912	0	-	0.58	(0.57,1]	chr17	664148	140	INTRON	INTRON	RFFL	ENSG00000092871.17	ENST00000315249.11:ENST00000584655.5:ENST00000447669.6:ENST00000584541.1:ENST00000414419.6:ENST00000581265.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	46	2	3.42323	3.738875	4.05452	8.58388e-4	2.28989e-5	0.0267428	0.00373083
chr17	61987428	61987528	6810087	0	-	0.24	[0,0.28]	chr17	672898	3	SS3_PROX	SS3_PROX:INTRON	MED13	ENSG00000108510.10	ENST00000397786.7	protein_coding	protein_coding	protein_coding	protein_coding	1	46	2	2.8569	3.7388700000000004	4.62084	0.0313633	0.013822	0.13151	0.10247
chr1	90995362	90995462	502261	0	-	0.34	(0.32,0.35]	chr1	59504	126	INTRON	INTRON	ZNF644	ENSG00000122482.22	ENST00000370440.5:ENST00000337393.10:ENST00000347275.9:ENST00000361321.5:ENST00000467231.5:ENST00000498303.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	40	2	2.71269	3.7388500000000002	4.76501	0.0181461	0.0114287	0.114853	0.0886611
chr11	46825661	46825761	4948560	0	-	0.34	(0.32,0.35]	chr11	463853	40	INTRON	INTRON	CKAP5	ENSG00000175216.15	ENST00000529230.6:ENST00000312055.9:ENST00000526496.1:ENST00000525248.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	40	2	2.71269	3.7388500000000002	4.76501	0.0181461	0.0114287	0.114853	0.0886611
chr21	22266007	22266107	7385028	0	+	0.34	(0.32,0.35]	chr21	752727	528	INTRON	INTRON	ENSG00000226043	ENSG00000226043.2	ENST00000667099.1:ENST00000654607.1:ENST00000444130.1	lncRNA	lncRNA	lncRNA	lncRNA	1	40	2	2.71269	3.7388500000000002	4.76501	0.0181461	0.0114287	0.114853	0.0886611
chr2	171159387	171159487	1264087	0	-	0.47	(0.44,0.476]	chr2	133936	4	SS5_PROX	SS5_PROX:INTRON	TLK1	ENSG00000198586.14	ENST00000431350.7:ENST00000360843.7:ENST00000359766.7:ENST00000521943.5:ENST00000409443.6:ENST00000413010.5:ENST00000466220.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	50	2	2.0776	3.7388000000000003	5.4	0.0292951	7.02611e-4	0.141862	0.024224
chr7	150266453	150266553	3673079	0	-	0.29	(0.28,0.32]	chr7	340876	170	INTRON	INTRON	ACTR3C	ENSG00000106526.11	ENST00000478393.5:ENST00000683684.1:ENST00000252071.8	protein_coding	protein_coding	protein_coding	protein_coding	2	102	2	3.36855	3.73879	4.10903	0.00305882	7.08337e-5	0.0494118	0.00695952
chr11	2980908	2981005	4891883	0	-	0.42268	(0.408,0.44]	chr11	458353	13	INTRON	INTRON	NAP1L4	ENSG00000205531.13	ENST00000620138.4:ENST00000380542.9:ENST00000526115.5:ENST00000532325.6:ENST00000448187.5:ENST00000399614.6:ENST00000430811.5:ENST00000529361.5:ENST00000528968.5:ENST00000530064.5:ENST00000526842.5:ENST00000531291.5:ENST00000455338.6:ENST00000534372.1	protein_coding	protein_coding	protein_coding	protein_coding	4	146	2	3.43431	3.738785	4.04326	1.44222e-4	1.92737e-6	0.0109794	8.42956e-4
chr5	12750165	12750265	2320341	0	+	0.48	(0.476,0.515]	chr5	224798	385	INTRON	INTRON	LINC01194	ENSG00000248131.6	ENST00000513051.6:ENST00000505196.1	lncRNA	lncRNA	lncRNA	lncRNA	2	56	2	2.69886	3.7387099999999998	4.77856	0.00385209	0.00305743	0.0542786	0.0509893
chr20	63914480	63914579	7301153	0	+	0.50505	(0.476,0.515]	chr20	743137	55	INTRON	INTRON	DNAJC5	ENSG00000101152.11	ENST00000360864.9:ENST00000470551.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	82	2	3.33416	3.7386749999999997	4.14319	0.00230489	3.39012e-5	0.0428247	0.0046443
chr7	130090196	130090296	3413791	0	+	0.24	[0,0.28]	chr7	319098	190	INTRON	INTRON	KLHDC10	ENSG00000128607.14	ENST00000335420.10:ENST00000463413.1:ENST00000468226.1	protein_coding	protein_coding	protein_coding	protein_coding	2	115	2	3.4206	3.73865	4.0567	0.00322364	1.31789e-4	0.0507087	0.00990153
chr1	120586687	120586786	535607	0	-	0.50505	(0.476,0.515]	chr1	63034	71	INTRON	INTRON	PDE4DIPP2	ENSG00000275131.3	ENST00000612480.2	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	1	37	2	2.94692	3.738575	4.53023	0.0119748	0.00794331	0.0899583	0.0797304
chr15	90971984	90972081	6259419	0	-	0.505155	(0.476,0.515]	chr15	597288	11	INTRON	INTRON	PRC1:ENSG00000284946	ENSG00000198901.14:ENSG00000284946.1	ENST00000394249.8:ENST00000361188.9:ENST00000643536.1:ENST00000555455.5:ENST00000442656.6:ENST00000559828.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	37	2	2.94692	3.738575	4.53023	0.0119748	0.00794331	0.0899583	0.0797304
chr19	36747067	36747167	7175606	0	-	0.5	(0.476,0.515]	chr19	725125	37	UTR3	UTR3:EXON_MRNA:INTRON	ZNF850	ENSG00000267041.6	ENST00000589390.5:ENST00000614887.4:ENST00000591344.2	protein_coding	protein_coding	protein_coding	protein_coding	1	37	2	2.94692	3.738575	4.53023	0.0119748	0.00794331	0.0899583	0.0797304
chr1	215593560	215593659	314448	0	+	0.313131	(0.28,0.32]	chr1	36239	65	INTRON	INTRON	KCTD3	ENSG00000136636.13	ENST00000259154.9	protein_coding	protein_coding	protein_coding	protein_coding	1	42	2	2.67453	3.73854	4.80255	0.021289	0.0137406	0.123318	0.0949306
chr15	67083426	67083526	6052024	0	+	0.31	(0.28,0.32]	chr15	576260	50	INTRON	INTRON	SMAD3	ENSG00000166949.17	ENST00000559460.5:ENST00000327367.9:ENST00000679624.1:ENST00000559937.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	42	2	2.67453	3.73854	4.80255	0.021289	0.0137406	0.123318	0.0949306
chr2	26211669	26211758	1085767	0	-	0.280899	(0.28,0.32]	chr2	116033	5	INTRON	INTRON	HADHA	ENSG00000084754.12	ENST00000380649.8:ENST00000644428.1:ENST00000492433.2:ENST00000643057.1:ENST00000645274.1:ENST00000643233.1:ENST00000643063.1:ENST00000646031.1:ENST00000646483.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	42	2	2.67453	3.73854	4.80255	0.021289	0.0137406	0.123318	0.0949306
chr21	32743166	32743247	7440176	0	-	0.283951	(0.28,0.32]	chr21	759222	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PAXBP1	ENSG00000159086.15	ENST00000331923.9:ENST00000466846.5:ENST00000443785.5:ENST00000497873.1:ENST00000290178.4:ENST00000445049.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	42	2	2.67453	3.73854	4.80255	0.021289	0.0137406	0.123318	0.0949306
chr22	40188336	40188436	7518288	0	+	0.32	(0.28,0.32]	chr22	768108	98	INTRON	INTRON	TNRC6B	ENSG00000100354.21	ENST00000301923.13:ENST00000402203.5:ENST00000454349.7:ENST00000489500.1:ENST00000335727.13	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	42	2	2.67453	3.73854	4.80255	0.021289	0.0137406	0.123318	0.0949306
chr5	21506986	21507086	2326208	0	+	0.29	(0.28,0.32]	chr5	225058	44	INTRON	INTRON	GUSBP1	ENSG00000183666.18	ENST00000508260.5:ENST00000449061.3:ENST00000685731.1:ENST00000688956.1:ENST00000692922.1:ENST00000686144.1:ENST00000607545.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	1	42	2	2.67453	3.73854	4.80255	0.021289	0.0137406	0.123318	0.0949306
chr2	108541876	108541976	845920	0	+	0.27	[0,0.28]	chr2	94661	69	INTRON	INTRON	LIMS1	ENSG00000169756.17	ENST00000695516.1:ENST00000544547.6:ENST00000695517.1	protein_coding	protein_coding	protein_coding	protein_coding	1	46	2	2.36637	3.73835	5.11033	0.0500615	0.00991388	0.17488	0.0838372
chr6	24421138	24421237	2835572	0	+	0.262626	[0,0.28]	chr6	265780	20	INTRON	INTRON	MRS2	ENSG00000124532.15	ENST00000274747.11:ENST00000443868.6:ENST00000378386.8:ENST00000378353.5	protein_coding	protein_coding	protein_coding	protein_coding	1	46	2	2.36637	3.73835	5.11033	0.0500615	0.00991388	0.17488	0.0838372
chr5	179838473	179838571	2780057	0	-	0.489796	(0.476,0.515]	chr5	262418	7	UTR3	UTR3:EXON_MRNA:INTRON	MRNIP	ENSG00000161010.16	ENST00000522663.5:ENST00000518235.5:ENST00000520698.5:ENST00000376931.6:ENST00000523267.1:ENST00000523084.5:ENST00000292586.11:ENST00000518219.5:ENST00000521299.5:ENST00000521333.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	59	2	2.06898	3.7383349999999997	5.40769	0.0137491	6.23078e-4	0.10247	0.0229151
chr1	50673212	50673312	449377	0	-	0.38	(0.378,0.408]	chr1	54229	173	INTRON	INTRON	FAF1	ENSG00000185104.21	ENST00000396153.7:ENST00000494400.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	50	2	2.35527	3.738275	5.12128	0.0121511	0.00251746	0.0963966	0.0446195
chr1	54312285	54312385	462816	0	-	0.5	(0.476,0.515]	chr1	55768	304	INTRON	INTRON	SSBP3	ENSG00000157216.16	ENST00000610401.5:ENST00000357475.9:ENST00000371319.8:ENST00000417664.7:ENST00000533946.6:ENST00000326956.12:ENST00000371320.8:ENST00000426150.5:ENST00000533209.5:ENST00000525990.1:ENST00000528787.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	37	2	2.56868	3.7381450000000003	4.90761	0.0256676	0.00386428	0.133676	0.0542786
chr1	202532952	202533051	294634	0	+	0.50505	(0.476,0.515]	chr1	33886	302	INTRON	INTRON	PPP1R12B	ENSG00000077157.22	ENST00000391959.5:ENST00000608999.6:ENST00000290419.9:ENST00000491336.5:ENST00000466273.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	37	2	2.56868	3.7381450000000003	4.90761	0.0256676	0.00386428	0.133676	0.0542786
chr11	47536542	47536642	4950237	0	-	0.5	(0.476,0.515]	chr11	464246	119	INTRON	INTRON	CELF1	ENSG00000149187.19	ENST00000310513.10:ENST00000687097.1:ENST00000531165.5:ENST00000530151.5:ENST00000525841.5:ENST00000526419.1	protein_coding	protein_coding	protein_coding	protein_coding	1	37	2	2.56868	3.7381450000000003	4.90761	0.0256676	0.00386428	0.133676	0.0542786
chr13	19695983	19696083	5552065	0	-	0.51	(0.476,0.515]	chr13	530672	170	INTRON	INTRON	PSPC1	ENSG00000121390.19	ENST00000471658.5:ENST00000492741.5:ENST00000635562.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	1	37	2	2.56868	3.7381450000000003	4.90761	0.0256676	0.00386428	0.133676	0.0542786
chr7	73520029	73520129	3555078	0	-	0.51	(0.476,0.515]	chr7	330813	88	INTRON	INTRON	BAZ1B	ENSG00000009954.11	ENST00000339594.9:ENST00000404251.1	protein_coding	protein_coding	protein_coding	protein_coding	1	37	2	2.56868	3.7381450000000003	4.90761	0.0256676	0.00386428	0.133676	0.0542786
chr1	114498060	114498160	527768	0	-	0.41	(0.408,0.44]	chr1	62153	333	INTRON	INTRON	TRIM33	ENSG00000197323.12	ENST00000358465.7:ENST00000369543.6	protein_coding	protein_coding	protein_coding	protein_coding	1	37	2	2.96007	3.738055	4.51604	0.0137419	0.00753901	0.0949306	0.0773151
chr12	51126766	51126866	5325411	0	-	0.43	(0.408,0.44]	chr12	507890	12	INTRON	INTRON	TFCP2	ENSG00000135457.11	ENST00000257915.10:ENST00000685804.1:ENST00000549867.5:ENST00000548115.5:ENST00000548108.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	37	2	2.96007	3.738055	4.51604	0.0137419	0.00753901	0.0949306	0.0773151
chr3	52611753	52611853	1700014	0	-	0.43	(0.408,0.44]	chr3	174957	14	INTRON	INTRON	PBRM1	ENSG00000163939.18	ENST00000356770.8:ENST00000394830.7:ENST00000337303.8:ENST00000412587.5:ENST00000296302.11:ENST00000409057.5:ENST00000410007.5:ENST00000409114.7:ENST00000409767.5:ENST00000423351.5:ENST00000446103.5:ENST00000480064.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	37	2	2.96007	3.738055	4.51604	0.0137419	0.00753901	0.0949306	0.0773151
chr7	17933194	17933294	3496494	0	-	0.42	(0.408,0.44]	chr7	326520	255	INTRON	INTRON	SNX13	ENSG00000071189.21	ENST00000428135.7:ENST00000611725.4:ENST00000409076.6:ENST00000444712.5:ENST00000482558.5:ENST00000409604.1:ENST00000475800.5:ENST00000474067.5:ENST00000471744.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	37	2	2.96007	3.738055	4.51604	0.0137419	0.00753901	0.0949306	0.0773151
chr9	130875452	130875552	4215484	0	+	0.41	(0.408,0.44]	chr9	386465	4	SS5_PROX	SS5_PROX:INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000318560.6	protein_coding	protein_coding	protein_coding	protein_coding	10	331	2	3.56489	3.7379949999999997	3.9111	3.82583e-7	1.96341e-7	3.44559e-4	2.07345e-4
chr2	15607513	15607613	703955	0	+	0.33	(0.32,0.35]	chr2	81676	2	SS5_PROX	SS5_PROX:INTRON	DDX1	ENSG00000079785.16	ENST00000381341.7:ENST00000677302.1:ENST00000434671.2:ENST00000676759.1:ENST00000478695.2:ENST00000678786.1:ENST00000678536.1:ENST00000679227.1:ENST00000678755.1:ENST00000676937.1:ENST00000676916.1:ENST00000617198.5:ENST00000233084.8:ENST00000677437.1:ENST00000678137.1:ENST00000678594.1:ENST00000459706.2:ENST00000677355.1:ENST00000470674.2:ENST00000676635.1:ENST00000677552.1:ENST00000621973.2:ENST00000678391.1:ENST00000677649.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	152	2	2.93133	3.737775	4.54422	5.89873e-4	4.65051e-6	0.0225024	0.00144728
chr7	105549296	105549382	3375863	0	+	0.325581	(0.32,0.35]	chr7	316078	2	INTRON	INTRON	RINT1	ENSG00000135249.8	ENST00000257700.7:ENST00000497979.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	56	2	2.71053	3.7377700000000003	4.76501	0.0114287	0.00346747	0.0886611	0.0539802
chr1	35873678	35873777	70541	0	+	0.353535	(0.35,0.378]	chr1	9024	34	INTRON	INTRON	AGO1	ENSG00000092847.13	ENST00000373206.5	protein_coding	protein_coding	protein_coding	protein_coding	1	43	2	2.89003	3.7377000000000002	4.58537	0.0122391	0.00703328	0.0910127	0.0754576
chr10	21542856	21542955	4404495	0	+	0.40404	(0.378,0.408]	chr10	406427	11	INTRON	INTRON	MLLT10	ENSG00000078403.17	ENST00000651097.1:ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000377100.8:ENST00000377091.7:ENST00000650772.1:ENST00000651298.1:ENST00000652497.1:ENST00000495130.5:ENST00000377059.7:ENST00000621220.4:ENST00000476557.5:ENST00000462999.5:ENST00000430455.2:ENST00000479634.1:ENST00000480415.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	42	2	2.13703	3.73766	5.33829	0.0797592	3.59275e-4	0.19979	0.0169207
chr18	260244	260304	6938958	0	-	0.383333	(0.378,0.408]	chr18	686306	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	THOC1	ENSG00000079134.13	ENST00000261600.11:ENST00000579232.5:ENST00000580038.5:ENST00000578529.5:ENST00000631280.2:ENST00000582313.5:ENST00000581269.5:ENST00000581116.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	134	2	3.29791	3.7376	4.17729	5.82975e-5	3.60429e-5	0.00668534	0.00481059
chr7	156891169	156891269	3687998	0	-	0.26	[0,0.28]	chr7	342096	539	INTRON	INTRON	LMBR1	ENSG00000105983.23	ENST00000353442.10:ENST00000415428.5:ENST00000454132.5:ENST00000434503.5:ENST00000430278.5:ENST00000434278.5:ENST00000444719.5:ENST00000461469.5:ENST00000414218.1:ENST00000434453.1:ENST00000498034.5:ENST00000433968.5:ENST00000485985.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	157	2	3.30954	3.737585	4.16563	6.69788e-4	7.75265e-5	0.0236302	0.00735438
chr1	168058525	168058625	249729	0	+	0.43	(0.408,0.44]	chr1	29648	72	INTRON	INTRON	DCAF6	ENSG00000143164.16	ENST00000432587.6:ENST00000367843.7:ENST00000367840.4:ENST00000312263.10:ENST00000489398.1:ENST00000478668.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	37	2	2.58179	3.73753	4.89327	0.024638	0.00458906	0.131869	0.0595107
chr19	49925199	49925299	7202002	0	-	0.42	(0.408,0.44]	chr19	730674	62	INTRON	INTRON	NUP62	ENSG00000213024.12	ENST00000422090.2:ENST00000352066.8:ENST00000597723.5:ENST00000597029.5:ENST00000596217.1:ENST00000595463.5:ENST00000593652.5:ENST00000599567.5:ENST00000596437.5:ENST00000600583.5:ENST00000594673.5:ENST00000599788.1:ENST00000600935.1:ENST00000596680.5:ENST00000601665.5:ENST00000599560.5:ENST00000599186.5:ENST00000597814.1:ENST00000599830.1:ENST00000598301.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	37	2	2.58179	3.73753	4.89327	0.024638	0.00458906	0.131869	0.0595107
chr15	63761527	63761625	6200176	0	-	0.397959	(0.378,0.408]	chr15	591421	28	INTRON	INTRON	HERC1	ENSG00000103657.14	ENST00000443617.7:ENST00000561400.1:ENST00000559886.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	84	2	3.47322	3.7374599999999996	4.0017	0.00147803	7.73853e-5	0.0348908	0.00735438
chr1	65262406	65262505	135615	0	+	0.474747	(0.44,0.476]	chr1	15341	74	INTRON	INTRON	DNAJC6	ENSG00000116675.16	ENST00000463018.5:ENST00000494710.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	199	2	3.26444	3.737335	4.21023	2.31101e-5	5.98902e-7	0.00392296	4.21585e-4
chr3	25753943	25754042	1642544	0	-	0.363636	(0.35,0.378]	chr3	168666	23	INTRON	INTRON	NGLY1	ENSG00000151092.18	ENST00000280700.10:ENST00000428257.5:ENST00000675217.1:ENST00000676225.1:ENST00000493324.5:ENST00000396649.7:ENST00000308710.9:ENST00000280699.13:ENST00000674841.1:ENST00000675234.1:ENST00000463611.2:ENST00000417874.6:ENST00000427041.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	42	2	2.32443	3.7372949999999996	5.15016	0.0544216	9.78549e-4	0.164972	0.0287765
chr4	1898622	1898720	1910847	0	+	0.367347	(0.35,0.378]	chr4	191727	44	INTRON	INTRON	NSD2	ENSG00000109685.19	ENST00000508803.6:ENST00000507820.5:ENST00000508355.5:ENST00000514045.5:ENST00000515806.1:ENST00000398261.6:ENST00000382891.9:ENST00000353275.9:ENST00000382892.6:ENST00000382895.7:ENST00000312087.10:ENST00000420906.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	42	2	2.32443	3.7372949999999996	5.15016	0.0544216	9.78549e-4	0.164972	0.0287765
chr1	1777489	1777588	361727	0	-	0.343434	(0.32,0.35]	chr1	42219	117	INTRON	INTRON	NADK	ENSG00000008130.15	ENST00000378625.5:ENST00000341991.7:ENST00000341426.9:ENST00000492845.6:ENST00000492768.5:ENST00000460602.5:ENST00000464373.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	40	2	2.78073	3.7372650000000003	4.6938	0.01481	0.0137794	0.106702	0.0949306
chr1	52494162	52494257	457969	0	-	0.326316	(0.32,0.35]	chr1	55058	1	INTRON	INTRON	TUT4	ENSG00000134744.14	ENST00000371544.7:ENST00000257177.9:ENST00000528642.5:ENST00000484723.6:ENST00000371541.5:ENST00000473856.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	40	2	2.78073	3.7372650000000003	4.6938	0.01481	0.0137794	0.106702	0.0949306
chr12	76433260	76433360	5371109	0	-	0.33	(0.32,0.35]	chr12	512466	101	INTRON	INTRON	OSBPL8	ENSG00000091039.17	ENST00000261183.8:ENST00000393249.6:ENST00000611266.4:ENST00000393250.8:ENST00000547540.5:ENST00000548341.5:ENST00000553139.5:ENST00000549570.5:ENST00000550628.5:ENST00000549646.5	protein_coding	protein_coding	protein_coding	protein_coding	1	40	2	2.78073	3.7372650000000003	4.6938	0.01481	0.0137794	0.106702	0.0949306
chr3	172066718	172066818	1559815	0	+	0.33	(0.32,0.35]	chr3	161527	194	INTRON	INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000421757.5:ENST00000469491.5:ENST00000336824.8:ENST00000423424.5:ENST00000416957.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	40	2	2.78073	3.7372650000000003	4.6938	0.01481	0.0137794	0.106702	0.0949306
chr12	19167336	19167436	5088647	0	+	0.3	(0.28,0.32]	chr12	480740	345	INTRON	INTRON	PLEKHA5	ENSG00000052126.15	ENST00000429027.7:ENST00000540972.5:ENST00000299275.10:ENST00000539256.5:ENST00000538714.5:ENST00000535357.5:ENST00000538034.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	57	2	2.42868	3.737235	5.04579	0.0105331	0.00714672	0.0908969	0.0723634
chr10	70676292	70676392	4447361	0	+	0.32	(0.28,0.32]	chr10	410366	9	INTRON	INTRON	ADAMTS14	ENSG00000138316.11	ENST00000373207.2:ENST00000373208.5	protein_coding	protein_coding	protein_coding	protein_coding	1	42	2	2.73945	3.737095	4.73474	0.017681	0.0162835	0.11319	0.101453
chr15	83485361	83485460	6082360	0	+	0.313131	(0.28,0.32]	chr15	579031	374	INTRON	INTRON	SH3GL3	ENSG00000140600.17	ENST00000492099.1:ENST00000427482.7:ENST00000563901.5:ENST00000324537.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	42	2	2.73945	3.737095	4.73474	0.017681	0.0162835	0.11319	0.101453
chr19	21026771	21026871	7039173	0	+	0.33	(0.32,0.35]	chr19	701845	35	INTRON	INTRON	ZNF430	ENSG00000118620.13	ENST00000599548.5:ENST00000594110.5:ENST00000261560.10:ENST00000595833.1:ENST00000595401.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	40	2	2.64129	3.7370799999999997	4.83287	0.0222819	0.0095071	0.124303	0.0817766
chr5	113520220	113520319	2453922	0	+	0.333333	(0.32,0.35]	chr5	235145	45	INTRON	INTRON	YTHDC2	ENSG00000047188.16	ENST00000161863.9:ENST00000503857.5:ENST00000515883.5:ENST00000514720.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	40	2	2.64129	3.7370799999999997	4.83287	0.0222819	0.0095071	0.124303	0.0817766
chr6	143166082	143166182	2976240	0	+	0.35	(0.32,0.35]	chr6	279149	5	INTRON	INTRON	AIG1	ENSG00000146416.19	ENST00000367601.8:ENST00000447498.5:ENST00000646199.1:ENST00000357847.9:ENST00000629020.2:ENST00000275235.8:ENST00000494282.6:ENST00000458219.1:ENST00000470265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	40	2	2.64129	3.7370799999999997	4.83287	0.0222819	0.0095071	0.124303	0.0817766
chr2	171108462	171108562	1263573	0	-	0.31	(0.28,0.32]	chr2	133913	168	INTRON	INTRON	TLK1	ENSG00000198586.14	ENST00000431350.7:ENST00000360843.7:ENST00000359766.7:ENST00000521943.5:ENST00000409443.6:ENST00000413010.5:ENST00000470340.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	59	2	2.67153	3.7370400000000004	4.80255	0.0137406	0.00436402	0.0949306	0.060356
chr5	69370284	69370384	2380906	0	+	0.34	(0.32,0.35]	chr5	229345	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	RAD17	ENSG00000152942.19	ENST00000514066.6:ENST00000361732.6:ENST00000507927.5:ENST00000509734.5:ENST00000354868.10:ENST00000511349.1:ENST00000521422.5:ENST00000504177.5:ENST00000354312.7:ENST00000345306.10:ENST00000616683.4:ENST00000512785.5:ENST00000506564.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	126	2	3.18611	3.73699	4.28787	6.68157e-4	2.11436e-5	0.0235847	0.00355554
chr16	18159664	18159763	6454231	0	-	0.343434	(0.32,0.35]	chr16	621964	82	INTRON	INTRON	ENSG00000260242	ENSG00000260242.1	ENST00000563866.1	lncRNA	lncRNA	lncRNA	lncRNA	2	56	2	1.88468	3.736955	5.58923	0.0515071	8.12357e-4	0.176696	0.0263656
chr3	101590670	101590770	1468574	0	+	0.47	(0.44,0.476]	chr3	153952	4	SS5_PROX	SS5_PROX:INTRON	PCNP	ENSG00000081154.12	ENST00000265260.8:ENST00000498274.5:ENST00000460231.5:ENST00000469941.5:ENST00000486406.5:ENST00000470490.1:ENST00000465366.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	81	2	3.4718	3.73686	4.00192	0.00136358	7.32704e-5	0.0336321	0.00714177
chr17	777604	777692	6698977	0	-	0.431818	(0.408,0.44]	chr17	655482	8	EXON_MRNA	EXON_MRNA:INTRON	GLOD4	ENSG00000167699.14	ENST00000571073.5:ENST00000301329.11:ENST00000301328.9:ENST00000576239.5:ENST00000574554.5:ENST00000575851.5:ENST00000576419.1:ENST00000575790.5:ENST00000574581.5:ENST00000572220.1:ENST00000576670.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	59	2	2.03431	3.7368550000000003	5.4394	0.0154896	6.50925e-4	0.108998	0.0232863
chr15	34425316	34425416	6133142	0	-	0.37	(0.35,0.378]	chr15	584282	172	INTRON	INTRON	GOLGA8A	ENSG00000175265.18	ENST00000359187.5:ENST00000569781.1:ENST00000565885.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	39	2	2.99173	3.7367850000000002	4.48184	0.0191702	0.00713365	0.108861	0.0756118
chr15	68139746	68139846	6056811	0	+	0.36	(0.35,0.378]	chr15	576567	515	INTRON	INTRON	PIAS1	ENSG00000033800.14	ENST00000564915.5:ENST00000249636.11:ENST00000562190.1:ENST00000545237.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	39	2	2.99173	3.7367850000000002	4.48184	0.0191702	0.00713365	0.108861	0.0756118
chr11	77635191	77635291	4994319	0	-	0.36	(0.35,0.378]	chr11	471944	49	INTRON	INTRON	CLNS1A	ENSG00000074201.9	ENST00000525428.6:ENST00000525064.5:ENST00000263309.7:ENST00000532069.5:ENST00000528364.1:ENST00000527133.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	42	2	2.72497	3.736785	4.7486	0.0198266	0.00418965	0.109608	0.0591344
chr16	20820544	20820642	6318093	0	+	0.377551	(0.35,0.378]	chr16	604706	40	INTRON	INTRON	REXO5	ENSG00000005189.20	ENST00000568894.5:ENST00000566993.5:ENST00000348433.10:ENST00000261377.11:ENST00000568501.5:ENST00000566276.5:ENST00000568476.5:ENST00000565340.5:ENST00000568647.5:ENST00000566518.5:ENST00000564274.5:ENST00000567297.5:ENST00000563617.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	42	2	2.72497	3.736785	4.7486	0.0198266	0.00418965	0.109608	0.0591344
chr17	62034866	62034962	6810575	0	-	0.520833	(0.515,0.57]	chr17	672940	5	INTRON	INTRON	MED13	ENSG00000108510.10	ENST00000397786.7	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	3.05839	3.736685	4.41498	0.0106866	0.00485936	0.0861859	0.0640618
chr2	38750694	38750723	1099878	0	-	0.482759	(0.476,0.515]	chr2	118014	1	SS5_PROX	SS5_PROX:INTRON	SRSF7	ENSG00000115875.19	ENST00000446327.6:ENST00000313117.11:ENST00000425778.5:ENST00000425941.6:ENST00000409276.5:ENST00000431066.5:ENST00000443213.5:ENST00000415527.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	65	2	3.1441	3.736625	4.32915	0.0124637	5.63876e-4	0.0973643	0.0219303
chr10	133400541	133400639	4540280	0	+	0.316327	(0.28,0.32]	chr10	419084	5	INTRON	INTRON	MTG1	ENSG00000148824.19	ENST00000477902.6:ENST00000317502.11:ENST00000432508.3:ENST00000460848.5:ENST00000495014.5:ENST00000473735.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	70	2	1.6633	3.7365500000000003	5.8098	0.0522231	5.67703e-4	0.177274	0.0220072
chr7	36427128	36427228	3307396	0	+	0.31	(0.28,0.32]	chr7	307184	1	SS5_PROX	SS5_PROX:INTRON	ANLN	ENSG00000011426.11	ENST00000396068.6:ENST00000265748.7:ENST00000428612.5:ENST00000457743.1	protein_coding	protein_coding	protein_coding	protein_coding	2	63	2	1.81582	3.7363850000000003	5.65695	0.068122	2.41184e-4	0.184298	0.0136674
chr7	136116970	136117070	3431422	0	+	0.38	(0.378,0.408]	chr7	319907	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	ENSG00000232053	ENSG00000232053.7	ENST00000657456.1:ENST00000668062.1:ENST00000668668.1:ENST00000445293.6:ENST00000659747.1:ENST00000668896.1:ENST00000435996.1	lncRNA	lncRNA	lncRNA	lncRNA	6	171	2	3.06885	3.73627	4.40369	1.78155e-5	1.74396e-5	0.00335687	0.00321637
chr7	32585041	32585141	3304150	0	+	0.42	(0.408,0.44]	chr7	306851	11	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	AVL9	ENSG00000105778.20	ENST00000318709.9:ENST00000409301.5:ENST00000446718.1:ENST00000497020.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	131	2	3.01715	3.736235	4.45532	1.77739e-4	1.13168e-5	0.0116289	0.00266636
chr10	18527351	18527450	4569457	0	-	0.343434	(0.32,0.35]	chr10	421439	133	INTRON	INTRON	ENSG00000240291	ENSG00000240291.1	ENST00000425669.1	lncRNA	lncRNA	lncRNA	lncRNA	4	84	2	1.94669	3.736155	5.52562	0.0154073	2.76065e-4	0.100659	0.0147997
chr6	57106549	57106648	2878223	0	+	0.454545	(0.44,0.476]	chr6	273248	46	UTR3	UTR3:EXON_MRNA:INTRON	ZNF451	ENSG00000112200.17	ENST00000515290.5:ENST00000510483.5:ENST00000357489.7:ENST00000370708.8:ENST00000370702.5:ENST00000444273.6:ENST00000370711.9:ENST00000370706.9:ENST00000491832.6:ENST00000502749.1:ENST00000504603.1:ENST00000509071.5:ENST00000509251.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	12	350	2	2.86641	3.736155	4.6059	1.64771e-5	2.14536e-9	0.00325235	1.26299e-5
chr4	126733327	126733427	2238044	0	-	0.24	[0,0.28]	chr4	219029	347	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	1	47	2	3.00498	3.7361199999999997	4.46726	0.0427997	0.00876063	0.148082	0.0846118
chr7	148835627	148835726	3670273	0	-	0.262626	[0,0.28]	chr7	340610	25	INTRON	INTRON	EZH2	ENSG00000106462.12	ENST00000683292.1:ENST00000320356.7:ENST00000492143.5:ENST00000478654.5:ENST00000350995.6:ENST00000460911.5:ENST00000683744.1:ENST00000682317.1:ENST00000682263.1:ENST00000684300.1:ENST00000476773.5:ENST00000483967.5:ENST00000498186.5:ENST00000483012.1:ENST00000682401.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	47	2	3.00498	3.7361199999999997	4.46726	0.0427997	0.00876063	0.148082	0.0846118
chr19	20653575	20653675	7158065	0	-	0.47	(0.44,0.476]	chr19	723638	68	INTRON	INTRON	ZNF626	ENSG00000188171.17	ENST00000601440.6:ENST00000595405.1:ENST00000291750.6	protein_coding	protein_coding	protein_coding	protein_coding	3	64	2	1.71574	3.7361150000000003	5.75649	0.045256	4.17314e-5	0.149888	0.00523306
chr11	112078715	112078815	4865413	0	+	0.53	(0.515,0.57]	chr11	453991	4	SS5_PROX	SS5_PROX:INTRON	NKAPD1	ENSG00000150776.18	ENST00000420986.6:ENST00000532163.5:ENST00000280352.13:ENST00000393047.8:ENST00000530104.2:ENST00000524989.1:ENST00000526879.5:ENST00000525785.5:ENST00000531378.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	34	2	2.56306	3.73609	4.90912	0.0247751	0.0021669	0.131869	0.0417866
chr15	58615982	58616082	6192162	0	-	0.36	(0.35,0.378]	chr15	589901	36	INTRON	INTRON	ADAM10	ENSG00000137845.15	ENST00000260408.8:ENST00000402627.5:ENST00000561288.1:ENST00000482945.5:ENST00000396136.6:ENST00000470269.5:ENST00000462061.1:ENST00000481164.1:ENST00000475898.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	39	2	2.48657	3.73609	4.98561	0.032907	0.00474226	0.145164	0.0600445
chr3	63869390	63869489	1441053	0	+	0.363636	(0.35,0.378]	chr3	152346	21	INTRON	INTRON	ATXN7	ENSG00000163635.20	ENST00000643464.1:ENST00000647117.1:ENST00000674280.1:ENST00000474112.5:ENST00000474513.6:ENST00000295900.10:ENST00000674254.1:ENST00000650280.1:ENST00000646942.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	39	2	2.48657	3.73609	4.98561	0.032907	0.00474226	0.145164	0.0600445
chr9	94451055	94451155	4162936	0	+	0.36	(0.35,0.378]	chr9	379522	2	SS3_PROX	SS3_PROX:INTRON	MFSD14B	ENSG00000148110.17	ENST00000375344.8	protein_coding	protein_coding	protein_coding	protein_coding	1	39	2	2.48657	3.73609	4.98561	0.032907	0.00474226	0.145164	0.0600445
chr8	90367366	90367466	3793769	0	+	0.31	(0.28,0.32]	chr8	351792	153	INTRON	INTRON	LINC00534	ENSG00000253394.7	ENST00000662145.1:ENST00000655523.1:ENST00000517400.6:ENST00000658299.1:ENST00000663329.1:ENST00000658342.1:ENST00000523283.6:ENST00000655219.1:ENST00000662692.1:ENST00000667296.1:ENST00000667565.1:ENST00000523406.2:ENST00000659030.1:ENST00000653734.1:ENST00000654785.1:ENST00000524361.5:ENST00000668745.1:ENST00000661519.1:ENST00000671657.1:ENST00000655123.1:ENST00000663098.1:ENST00000670903.1:ENST00000654946.1	lncRNA	lncRNA	lncRNA	lncRNA	1	46	2	2.32871	3.73606	5.14341	0.0581621	0.00185891	0.167723	0.039946
chr7	152344555	152344655	3680378	0	-	0.31	(0.28,0.32]	chr7	341653	3	SS3_PROX	SS3_PROX:INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000682301.1:ENST00000452749.2:ENST00000680867.1:ENST00000683800.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	69	2	2.21798	3.7359299999999998	5.25388	0.00901091	0.00385849	0.0851009	0.0542786
chr1	185316057	185316156	603706	0	-	0.444444	(0.44,0.476]	chr1	71930	44	INTRON	INTRON	IVNS1ABP	ENSG00000116679.16	ENST00000367498.8:ENST00000459929.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	49	2	2.27304	3.73592	5.1988	0.0158915	0.00151532	0.109464	0.0352794
chr5	72884710	72884808	2387823	0	+	0.387755	(0.378,0.408]	chr5	230432	11	INTRON	INTRON	TNPO1	ENSG00000083312.19	ENST00000680533.1:ENST00000337273.10:ENST00000680025.1:ENST00000523768.5:ENST00000681711.1:ENST00000679378.1:ENST00000506351.6:ENST00000505082.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	85	2	3.32016	3.73585	4.15154	0.00268328	3.36054e-5	0.0464781	0.00463632
chr2	205996904	205997003	1316543	0	-	0.343434	(0.32,0.35]	chr2	138014	33	UTR3	UTR3:EXON_MRNA	INO80D	ENSG00000114933.16	ENST00000403263.6	protein_coding	protein_coding	protein_coding	protein_coding	2	54	2	2.13945	3.735815	5.33218	0.0254517	0.00204346	0.133676	0.04086
chr22	16801708	16801807	7546417	0	-	0.313131	(0.28,0.32]	chr22	771321	13	INTRON	INTRON	XKR3	ENSG00000172967.8	ENST00000331428.5:ENST00000684488.1	protein_coding	protein_coding	protein_coding	protein_coding	3	136	2	3.34408	3.73579	4.1275	2.20552e-4	1.40746e-4	0.0130309	0.0107933
chr13	19698879	19698979	5552094	0	-	0.24	[0,0.28]	chr13	530673	1	SS5_PROX	SS5_PROX:INTRON	PSPC1	ENSG00000121390.19	ENST00000471658.5:ENST00000492741.5:ENST00000635562.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	3	74	2	1.95669	3.735785	5.51488	0.0237518	0.00314116	0.129075	0.0500389
chr6	36927090	36927188	2855226	0	+	0.5	(0.476,0.515]	chr6	269912	38	UTR3	UTR3:EXON_MRNA	C6orf89	ENSG00000198663.17	ENST00000480824.7	protein_coding	protein_coding	protein_coding	protein_coding	2	49	2	2.37731	3.7357699999999996	5.09423	0.0111793	0.00204588	0.0937192	0.04086
chr5	28833441	28833541	2330084	0	+	0.26	[0,0.28]	chr5	225135	229	INTRON	INTRON	LINC02109	ENSG00000259786.7	ENST00000658190.1	lncRNA	lncRNA	lncRNA	lncRNA	1	50	2	2.49527	3.73573	4.97619	0.0436497	0.00535756	0.14882	0.0663076
chr12	51142143	51142243	5325565	0	-	0.41	(0.408,0.44]	chr12	507890	166	INTRON	INTRON	TFCP2	ENSG00000135457.11	ENST00000257915.10:ENST00000685804.1:ENST00000549867.5:ENST00000548115.5:ENST00000548108.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	49	2	2.39162	3.7357250000000004	5.07983	0.0105837	0.00247652	0.0911864	0.0446195
chr9	131421306	131421406	4217242	0	+	0.41	(0.408,0.44]	chr9	386720	267	INTRON	INTRON	PRRC2B	ENSG00000288701.1	ENST00000682525.1:ENST00000684596.1:ENST00000683519.1:ENST00000682501.1	protein_coding	protein_coding	protein_coding	protein_coding	2	49	2	2.39162	3.7357250000000004	5.07983	0.0105837	0.00247652	0.0911864	0.0446195
chr8	55950058	55950158	3755043	0	+	0.4	(0.378,0.408]	chr8	349274	2	SS3_PROX	SS3_PROX:INTRON	LYN	ENSG00000254087.8	ENST00000519728.6:ENST00000520220.6:ENST00000520050.1	protein_coding	protein_coding	protein_coding	protein_coding	3	60	2	2.09402	3.7357050000000003	5.37739	0.0126438	0.0010014	0.0982897	0.0288906
chr13	95292362	95292462	5639789	0	-	0.41	(0.408,0.44]	chr13	537181	226	INTRON	INTRON	ABCC4	ENSG00000125257.16	ENST00000645237.2:ENST00000643051.1:ENST00000643842.1:ENST00000646439.1:ENST00000643816.1:ENST00000536256.3:ENST00000643556.1:ENST00000629385.1:ENST00000642524.1:ENST00000645532.1:ENST00000644471.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	49	2	2.33431	3.735665	5.13702	0.0129219	0.00202889	0.0990564	0.04086
chr6	131662398	131662497	2960439	0	+	0.434343	(0.408,0.44]	chr6	278298	36	INTRON	INTRON	ENPP3	ENSG00000154269.15	ENST00000427707.5:ENST00000414305.5:ENST00000357639.8:ENST00000358229.6:ENST00000470930.5:ENST00000494023.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	49	2	2.33431	3.735665	5.13702	0.0129219	0.00202889	0.0990564	0.04086
chr20	47215006	47215105	7348074	0	-	0.474747	(0.44,0.476]	chr20	749229	19	INTRON	INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000467200.6:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4	protein_coding	protein_coding	protein_coding	protein_coding	2	54	2	2.47339	3.735605	4.99782	0.0090196	0.0013223	0.080367	0.0333932
chr7	5193745	5193845	3271996	0	+	0.51	(0.476,0.515]	chr7	304090	4	SS5_PROX	SS5_PROX:INTRON	WIPI2	ENSG00000157954.15	ENST00000401525.7:ENST00000288828.9:ENST00000404704.7:ENST00000466014.5:ENST00000485854.5:ENST00000382384.6:ENST00000496867.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	63	2	1.93059	3.7356	5.54061	0.023762	1.30462e-4	0.118822	0.00983066
chr19	5610860	5610946	7124236	0	-	0.290698	(0.28,0.32]	chr19	717016	3	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SAFB2	ENSG00000130254.12	ENST00000252542.9:ENST00000591123.5:ENST00000592599.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	207	2	2.94645	3.7354399999999996	4.52443	6.67976e-5	2.08309e-5	0.00677892	0.00371909
chr1	19222327	19222425	386913	0	-	0.489796	(0.476,0.515]	chr1	46157	16	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	EMC1	ENSG00000127463.16	ENST00000477853.6:ENST00000688219.1:ENST00000690732.1:ENST00000690451.1:ENST00000688667.1:ENST00000685099.1:ENST00000685594.1:ENST00000690823.1:ENST00000692207.1:ENST00000688332.1:ENST00000693007.1:ENST00000688918.1:ENST00000691945.1:ENST00000375199.7:ENST00000375208.7:ENST00000486405.2:ENST00000486238.1:ENST00000494770.7:ENST00000462505.1:ENST00000692400.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	57	2	2.77151	3.735345	4.69918	0.00400966	0.00288481	0.057767	0.0475859
chr1	1553766	1553866	360111	0	-	0.52	(0.515,0.57]	chr1	41847	74	INTRON	INTRON	SSU72	ENSG00000160075.12	ENST00000291386.4:ENST00000378725.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	71	2	1.38719	3.73527	6.08335	0.0540435	9.19549e-6	0.181713	0.00233911
chr15	78472503	78472582	6067839	0	+	0.493671	(0.476,0.515]	chr15	577958	2	INTRON	INTRON	IREB2	ENSG00000136381.13	ENST00000258886.13:ENST00000560440.5:ENST00000558570.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	130	2	3.0627	3.7352350000000003	4.40777	2.02307e-4	6.94954e-6	0.0129814	0.00187714
chr9	111392267	111392324	4314340	0	-	0.263158	[0,0.28]	chr9	396692	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ECPAS	ENSG00000136813.15	ENST00000684092.1:ENST00000338205.9:ENST00000259335.8	protein_coding	protein_coding	protein_coding	protein_coding	2	62	2	2.41169	3.734585	5.05748	0.0122872	0.0113653	0.0970106	0.0886611
chr2	96203945	96204045	1179946	0	-	0.54	(0.515,0.57]	chr2	126153	80	INTRON	INTRON	STARD7	ENSG00000084090.14	ENST00000337288.10:ENST00000443962.1:ENST00000488084.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	36	2	2.96814	3.73458	4.50102	0.00756432	0.00510768	0.0749063	0.0646039
chr2	239985016	239985116	1345312	0	-	0.54	(0.515,0.57]	chr2	141052	9	INTRON	INTRON	NDUFA10	ENSG00000130414.13	ENST00000419408.5:ENST00000679183.1:ENST00000677057.1:ENST00000676782.1:ENST00000677407.1:ENST00000676929.1:ENST00000678455.1:ENST00000252711.7:ENST00000677692.1:ENST00000476216.6:ENST00000677395.1:ENST00000678188.1:ENST00000677979.1:ENST00000678914.1:ENST00000678562.1:ENST00000678832.1:ENST00000677155.1:ENST00000677764.1:ENST00000677294.1:ENST00000678468.1:ENST00000677324.1:ENST00000678158.1:ENST00000676491.1:ENST00000677114.1:ENST00000404554.5:ENST00000620965.5:ENST00000485344.6:ENST00000679308.1:ENST00000677567.1:ENST00000679158.1:ENST00000443626.5:ENST00000444548.6:ENST00000448880.6:ENST00000677490.1:ENST00000307300.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	36	2	2.96814	3.73458	4.50102	0.00756432	0.00510768	0.0749063	0.0646039
chr16	644927	645026	6273200	0	+	0.40404	(0.378,0.408]	chr16	598786	14	INTRON	INTRON	MCRIP2	ENSG00000172366.20	ENST00000611328.4:ENST00000307650.9:ENST00000491999.5:ENST00000629534.2:ENST00000474840.5:ENST00000615744.4:ENST00000620462.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	157	2	2.69756	3.734575	4.77159	3.80456e-4	2.08503e-6	0.0176313	0.00100027
chr15	92967913	92968013	6104394	0	+	0.44	(0.408,0.44]	chr15	581501	4	SS5_PROX	SS5_PROX:INTRON	CHD2	ENSG00000173575.22	ENST00000626874.2:ENST00000394196.9:ENST00000635856.1:ENST00000625990.3:ENST00000637572.1:ENST00000636881.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	60	2	2.38928	3.7345550000000003	5.07983	0.0039105	0.00247652	0.0569957	0.0446195
chr2	53956070	53956170	1120429	0	-	0.35	(0.32,0.35]	chr2	120102	64	INTRON	INTRON	PSME4	ENSG00000068878.15	ENST00000404125.6:ENST00000389993.7:ENST00000481518.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	59	2	2.92893	3.7344049999999998	4.53988	0.0202178	0.00138	0.109913	0.0341261
chr18	187184	187284	6855116	0	+	0.26	[0,0.28]	chr18	679521	65	INTRON	INTRON	USP14	ENSG00000101557.15	ENST00000582707.5:ENST00000400266.7:ENST00000261601.8:ENST00000578942.5:ENST00000383589.6:ENST00000583119.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	76	2	2.25796	3.7342500000000003	5.21054	0.00871258	0.00758653	0.0844834	0.0749063
chr10	60787559	60787614	4435863	0	+	0.272727	[0,0.28]	chr10	409186	1	SS3_PROX	SS3_PROX:INTRON	CDK1	ENSG00000170312.17	ENST00000519078.6:ENST00000316629.8:ENST00000395284.8:ENST00000448257.6:ENST00000373809.2	protein_coding	protein_coding	protein_coding	protein_coding	2	62	2	1.95356	3.7342199999999997	5.51488	0.0463152	0.00314116	0.166231	0.0500389
chr7	10733501	10733601	3484115	0	-	0.34	(0.32,0.35]	chr7	325772	1716	INTRON	INTRON	MGC4859	ENSG00000283117.1	ENST00000634803.1	lncRNA	lncRNA	lncRNA	lncRNA	4	168	2	3.51782	3.734185	3.95055	1.4271e-4	5.7107e-6	0.0109245	0.00166334
chr7	127928887	127928987	3405188	0	+	0.41	(0.408,0.44]	chr7	318168	3	SS3_PROX	SS3_PROX:INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000465900.5:ENST00000486037.1:ENST00000484767.5:ENST00000492840.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	82	2	3.67886	3.734115	3.78937	3.86173e-4	3.51772e-4	0.017761	0.0174637
chr16	56935950	56936042	6361181	0	+	0.597826	(0.57,1]	chr16	610609	1	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	HERPUD1	ENSG00000051108.15	ENST00000439977.7:ENST00000300302.9:ENST00000344114.8:ENST00000565966.5:ENST00000569569.5:ENST00000570273.5:ENST00000379792.6:ENST00000569429.5:ENST00000563343.5:ENST00000563781.5:ENST00000568358.1:ENST00000564678.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	25	2	2.66801	3.7340600000000004	4.80011	0.0169968	6.07135e-4	0.110899	0.0226059
chr19	1027174	1027274	6993170	0	+	0.6	(0.57,1]	chr19	692502	1	SS5_PROX	SS5_PROX:INTRON	CNN2	ENSG00000064666.15	ENST00000562015.5:ENST00000263097.9:ENST00000348419.7:ENST00000565096.6:ENST00000562958.6:ENST00000569352.6:ENST00000568865.3:ENST00000606983.5:ENST00000607102.1:ENST00000562075.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	25	2	2.66801	3.7340600000000004	4.80011	0.0169968	6.07135e-4	0.110899	0.0226059
chr19	45869093	45869192	7080782	0	+	0.575758	(0.57,1]	chr19	708400	42	INTRON	INTRON	FOXA3	ENSG00000170608.3	ENST00000594297.1:ENST00000302177.3	protein_coding	protein_coding	protein_coding	protein_coding	1	25	2	2.66801	3.7340600000000004	4.80011	0.0169968	6.07135e-4	0.110899	0.0226059
chr2	151447173	151447271	893597	0	+	0.653061	(0.57,1]	chr2	98976	2	INTRON	INTRON	RIF1	ENSG00000080345.18	ENST00000453091.6:ENST00000428287.6:ENST00000444746.7:ENST00000243326.9:ENST00000414861.6:ENST00000430328.6	protein_coding	protein_coding	protein_coding	protein_coding	1	25	2	2.66801	3.7340600000000004	4.80011	0.0169968	6.07135e-4	0.110899	0.0226059
chr3	33392813	33392912	1651218	0	-	0.535354	(0.515,0.57]	chr3	169323	3	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	UBP1	ENSG00000153560.12	ENST00000283629.8:ENST00000492136.1:ENST00000447368.6:ENST00000466441.5:ENST00000283628.9:ENST00000486388.5:ENST00000464787.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	93	2	3.55467	3.73405	3.91343	1.28574e-4	3.43577e-5	0.0103138	0.0046762
chr10	6109042	6109142	4385897	0	+	0.38	(0.378,0.408]	chr10	404791	3	SS5_PROX	SS5_PROX:INTRON	RBM17	ENSG00000134453.16	ENST00000379888.9:ENST00000437845.6:ENST00000432931.5:ENST00000446108.5:ENST00000418631.5:ENST00000447032.1:ENST00000481147.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	50	2	2.46345	3.73402	5.00459	0.00827342	0.00371142	0.0813266	0.0535094
chr12	50984097	50984196	5324335	0	-	0.383838	(0.378,0.408]	chr12	507638	19	INTRON	INTRON	SLC11A2	ENSG00000110911.17	ENST00000551215.5:ENST00000547688.7:ENST00000644495.1:ENST00000643884.1:ENST00000546636.5:ENST00000547198.5:ENST00000646264.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	50	2	2.46345	3.73402	5.00459	0.00827342	0.00371142	0.0813266	0.0535094
chr1	23037518	23037618	43939	0	+	0.33	(0.32,0.35]	chr1	5258	65	INTRON	INTRON	KDM1A	ENSG00000004487.18	ENST00000692214.1:ENST00000686934.1:ENST00000689853.1:ENST00000465864.2:ENST00000691256.1:ENST00000688122.1:ENST00000692056.1:ENST00000692853.1:ENST00000689366.1:ENST00000686270.1:ENST00000685102.1:ENST00000690627.1:ENST00000686771.1:ENST00000692209.1:ENST00000686339.1:ENST00000691813.1:ENST00000693156.1:ENST00000688235.1:ENST00000692975.1:ENST00000687202.1:ENST00000691682.1:ENST00000691404.1:ENST00000691694.1:ENST00000688680.1:ENST00000356634.7:ENST00000400181.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	75	2	2.0893	3.733815	5.37833	0.00738971	0.00174321	0.0769106	0.0375363
chr1	37866843	37866943	425352	0	-	0.38	(0.378,0.408]	chr1	51531	3	SS3_PROX	SS3_PROX:INTRON	INPP5B	ENSG00000204084.13	ENST00000373023.6:ENST00000373024.8:ENST00000458109.6:ENST00000373027.5:ENST00000373026.5:ENST00000470364.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	50	2	2.23831	3.7337749999999996	5.22924	0.0179575	0.00172721	0.114265	0.0374701
chr1	220114974	220115073	318994	0	+	0.383838	(0.378,0.408]	chr1	36531	1	INTRON	INTRON	IARS2	ENSG00000067704.10	ENST00000366922.3:ENST00000490891.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	50	2	2.23831	3.7337749999999996	5.22924	0.0179575	0.00172721	0.114265	0.0374701
chr11	118762218	118762317	5046075	0	-	0.383838	(0.378,0.408]	chr11	475769	18	INTRON	INTRON	DDX6	ENSG00000110367.14	ENST00000534980.7:ENST00000620157.4:ENST00000526070.2	protein_coding	protein_coding	protein_coding	protein_coding	2	50	2	2.23831	3.7337749999999996	5.22924	0.0179575	0.00172721	0.114265	0.0374701
chr8	90490083	90490183	3795003	0	+	0.4	(0.378,0.408]	chr8	351820	134	INTRON	INTRON	LINC00534	ENSG00000253394.7	ENST00000655523.1:ENST00000658299.1:ENST00000655219.1:ENST00000662692.1:ENST00000667296.1:ENST00000667565.1:ENST00000653734.1:ENST00000654785.1:ENST00000524361.5:ENST00000668745.1:ENST00000671657.1	lncRNA	lncRNA	lncRNA	lncRNA	2	50	2	2.23831	3.7337749999999996	5.22924	0.0179575	0.00172721	0.114265	0.0374701
chr17	39274469	39274569	6765373	0	-	0.34	(0.32,0.35]	chr17	665444	1	SS5_PROX	SS5_PROX:INTRON	FBXL20	ENSG00000108306.13	ENST00000264658.11:ENST00000583610.5:ENST00000394294.7:ENST00000577399.5	protein_coding	protein_coding	protein_coding	protein_coding	4	76	2	2.18299	3.7337450000000003	5.2845	0.00505063	0.00240071	0.0646039	0.0440612
chr16	2131774	2131874	6431313	0	-	0.49	(0.476,0.515]	chr16	618727	120	INTRON	INTRON	PKD1	ENSG00000008710.20	ENST00000262304.9:ENST00000423118.5	protein_coding	protein_coding	protein_coding	protein_coding	4	68	2	1.68907	3.7337000000000002	5.77833	0.0296007	1.24749e-4	0.142135	0.010049
chr5	88218464	88218564	2669231	0	-	0.43	(0.408,0.44]	chr5	252658	109	INTRON	INTRON	TMEM161B	ENSG00000164180.14	ENST00000514135.5:ENST00000296595.11:ENST00000511087.5:ENST00000510089.5:ENST00000506536.5:ENST00000511218.5:ENST00000512429.5:ENST00000507872.1:ENST00000509387.5:ENST00000503755.5:ENST00000513487.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	59	2	1.9831	3.7336300000000002	5.48416	0.018491	5.43528e-4	0.116694	0.0215026
chr11	65435454	65435554	4805897	0	+	0.43	(0.408,0.44]	chr11	446554	128	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	76	2227	2	3.42851	3.733545	4.03858	5.36483e-10	2.50999e-10	4.70439e-6	2.01345e-6
chr15	28244000	28244099	6123257	0	-	0.525253	(0.515,0.57]	chr15	583285	49	INTRON	INTRON	HERC2	ENSG00000128731.18	ENST00000261609.13	protein_coding	protein_coding	protein_coding	protein_coding	4	112	2	2.92726	3.733485	4.53971	3.10919e-4	1.89301e-6	0.0162055	8.35956e-4
chr11	10524393	10524492	4914979	0	-	0.323232	(0.32,0.35]	chr11	460497	49	INTRON	INTRON	RNF141	ENSG00000110315.7	ENST00000265981.7:ENST00000528665.5:ENST00000533412.5	protein_coding	protein_coding	protein_coding	protein_coding	4	75	2	1.59364	3.73346	5.87328	0.0413426	2.6344e-4	0.161557	0.0149561
chr1	174347657	174347757	259004	0	+	0.5	(0.476,0.515]	chr1	30802	422	INTRON	INTRON	RABGAP1L	ENSG00000152061.24	ENST00000357444.10:ENST00000251507.8:ENST00000681986.1:ENST00000457696.1:ENST00000367690.5	protein_coding	protein_coding	protein_coding	protein_coding	2	54	2	2.54157	3.7334300000000002	4.92529	0.00697457	0.00180221	0.0718189	0.0392772
chr7	92207664	92207763	3569752	0	-	0.484848	(0.476,0.515]	chr7	332510	32	INTRON	INTRON	ENSG00000289027:KRIT1	ENSG00000289027.1:ENSG00000001631.17	ENST00000692281.1:ENST00000693096.1:ENST00000688180.1:ENST00000394507.5:ENST00000692807.1:ENST00000340022.6:ENST00000394505.7:ENST00000486261.5:ENST00000458177.7:ENST00000684808.1:ENST00000444960.6:ENST00000691239.1:ENST00000686094.1:ENST00000686527.1:ENST00000690529.1:ENST00000689411.1:ENST00000688665.1:ENST00000692157.1:ENST00000686043.1:ENST00000690720.1:ENST00000692690.1:ENST00000690908.1:ENST00000691827.1:ENST00000690751.1:ENST00000425073.2:ENST00000687876.1:ENST00000690904.1:ENST00000688781.1:ENST00000686785.1:ENST00000689556.1:ENST00000688314.1:ENST00000688404.1:ENST00000690292.1:ENST00000687135.1:ENST00000689082.1:ENST00000686149.1:ENST00000475770.6:ENST00000454017.6:ENST00000692361.1:ENST00000689778.1:ENST00000686619.1:ENST00000688766.1:ENST00000688580.1:ENST00000693563.1:ENST00000685431.1:ENST00000689539.1:ENST00000412043.6:ENST00000394503.6:ENST00000433016.6:ENST00000445516.2:ENST00000686233.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	49	2	2.26034	3.733395	5.20645	0.0166235	0.00136049	0.110511	0.0336321
chr3	43466024	43466124	1673874	0	-	0.41	(0.408,0.44]	chr3	170972	329	INTRON	INTRON	ANO10	ENSG00000160746.13	ENST00000292246.8:ENST00000350459.8:ENST00000396091.7:ENST00000414522.6:ENST00000451430.6:ENST00000448045.1	protein_coding	protein_coding	protein_coding	protein_coding	2	49	2	2.27464	3.7333300000000005	5.19202	0.0158016	0.0016671	0.109464	0.0369207
chr6	166973587	166973687	3264374	0	-	0.44	(0.408,0.44]	chr6	303067	4	INTRON	INTRON	ENSG00000227598	ENSG00000227598.1	ENST00000444102.1	lncRNA	lncRNA	lncRNA	lncRNA	2	49	2	2.27464	3.7333300000000005	5.19202	0.0158016	0.0016671	0.109464	0.0369207
chr17	30895486	30895582	6591086	0	+	0.489583	(0.476,0.515]	chr17	641038	7	UTR3	UTR3:EXON_MRNA	ATAD5	ENSG00000176208.9	ENST00000321990.5	protein_coding	protein_coding	protein_coding	protein_coding	6	206	2	3.64952	3.733145	3.81677	6.88757e-6	1.094e-6	0.00196831	5.99786e-4
chr16	88717808	88717901	6539485	0	-	0.462366	(0.44,0.476]	chr16	633839	1	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	PIEZO1	ENSG00000103335.22	ENST00000301015.14:ENST00000419505.5:ENST00000484567.6:ENST00000495568.7:ENST00000466823.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	221	2	3.06042	3.73306	4.4057	1.75956e-5	4.19756e-7	0.0031931	3.69778e-4
chr16	89688402	89688489	6421482	0	+	0.448276	(0.44,0.476]	chr16	616479	2	INTRON	INTRON	CDK10	ENSG00000185324.22	ENST00000331006.12:ENST00000505473.5:ENST00000508723.5:ENST00000511415.5:ENST00000502547.5:ENST00000353379.12:ENST00000505733.5:ENST00000512912.5:ENST00000510811.6:ENST00000507205.5:ENST00000472018.5:ENST00000625631.1:ENST00000564192.5:ENST00000378277.8:ENST00000514965.5:ENST00000503560.1:ENST00000504473.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	39	2	2.5364	3.73304	4.92968	0.0309324	0.00171443	0.13151	0.0381936
chr9	134328556	134328656	4219881	0	+	0.46	(0.44,0.476]	chr9	387343	15	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	39	2	2.60774	3.7329550000000005	4.85817	0.0255874	0.00223254	0.120269	0.0435144
chr1	16309698	16309798	382190	0	-	0.53	(0.515,0.57]	chr1	44880	34	INTRON	INTRON	FBXO42	ENSG00000037637.11	ENST00000375592.8:ENST00000478089.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	45	2	2.62817	3.732905	4.83764	0.004048	0.00279527	0.0578376	0.0469265
chr2	171524010	171524110	917341	0	+	0.4	(0.378,0.408]	chr2	101030	3	INTRON	INTRON	CYBRD1	ENSG00000071967.12	ENST00000409484.5:ENST00000468308.1:ENST00000321348.9:ENST00000375252.3:ENST00000474182.1:ENST00000494587.1:ENST00000445146.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	88	2	3.10274	3.73286	4.36298	0.00586642	9.6198e-6	0.0668095	0.00224473
chr6	27843155	27843254	2839068	0	+	0.373737	(0.35,0.378]	chr6	266457	11	INTRON	INTRON	H2BC15	ENSG00000233822.6	ENST00000449538.3:ENST00000606613.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	86	2	1.53417	3.7328200000000002	5.93147	0.0271808	1.32665e-4	0.136494	0.0104884
chr20	35488237	35488337	7262343	0	+	0.39	(0.378,0.408]	chr20	737887	77	INTRON	INTRON	CEP250	ENSG00000126001.16	ENST00000397527.6	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	3.05393	3.7328099999999997	4.41169	0.0199606	0.00551532	0.109608	0.0672816
chrX	53206818	53206916	7818479	0	-	0.387755	(0.378,0.408]	chrX	797466	42	INTRON	INTRON	KDM5C	ENSG00000126012.13	ENST00000687695.1:ENST00000685641.1:ENST00000685423.1:ENST00000693277.1:ENST00000688699.1:ENST00000452825.7:ENST00000375401.8:ENST00000404049.7:ENST00000691505.1:ENST00000375379.7:ENST00000375383.7:ENST00000497100.5:ENST00000465402.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	38	2	3.05393	3.7328099999999997	4.41169	0.0199606	0.00551532	0.109608	0.0672816
chr16	81501692	81501792	6405568	0	+	0.48	(0.476,0.515]	chr16	615031	58	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6	protein_coding	protein_coding	protein_coding	protein_coding	1	43	2	3.24596	3.7328	4.21964	0.0167715	0.00322919	0.110511	0.0507087
chr3	136939986	136940086	1513220	0	+	0.42	(0.408,0.44]	chr3	158212	90	INTRON	INTRON	NCK1	ENSG00000158092.7	ENST00000481752.6:ENST00000288986.6:ENST00000491539.5:ENST00000485096.5:ENST00000488930.5:ENST00000496489.5:ENST00000469404.1:ENST00000467911.1	protein_coding	protein_coding	protein_coding	protein_coding	2	53	2	2.11447	3.7326699999999997	5.35087	0.0285207	3.00323e-4	0.12666	0.0155054
chr3	44799491	44799591	1412610	0	+	0.31	(0.28,0.32]	chr3	148209	2	SS5_PROX	SS5_PROX:INTRON	KIF15	ENSG00000163808.17	ENST00000438321.5:ENST00000326047.9:ENST00000481166.6:ENST00000425755.5:ENST00000493134.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	42	2	2.80157	3.73258	4.66359	0.0193496	0.0147132	0.108861	0.106558
chr1	55167201	55167300	465418	0	-	0.393939	(0.378,0.408]	chr1	56266	2	INTRON	INTRON	USP24	ENSG00000162402.14	ENST00000294383.7	protein_coding	protein_coding	protein_coding	protein_coding	2	55	2	1.88729	3.732555	5.57782	0.0532327	1.18586e-4	0.162538	0.00930884
chr6	119225670	119225770	3204572	0	-	0.33	(0.32,0.35]	chr6	298302	204	INTRON	INTRON	MAN1A1	ENSG00000111885.7	ENST00000368468.4	protein_coding	protein_coding	protein_coding	protein_coding	1	44	2	2.23182	3.732545	5.23327	0.068598	9.33826e-4	0.184298	0.0278746
chr14	73422857	73422957	5918950	0	-	0.34	(0.32,0.35]	chr14	562258	124	INTRON	INTRON	NUMB	ENSG00000133961.21	ENST00000554546.5:ENST00000555238.6:ENST00000557597.5:ENST00000356296.8:ENST00000555394.5:ENST00000554394.5:ENST00000555307.5:ENST00000554315.5:ENST00000555987.5:ENST00000556112.5:ENST00000557774.5:ENST00000554818.5:ENST00000557031.5:ENST00000556600.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	40	2	2.84569	3.73229	4.61889	0.0166646	0.0121137	0.102621	0.0962599
chr3	45725931	45726030	1417418	0	+	0.343434	(0.32,0.35]	chr3	148713	20	INTRON	INTRON	SACM1L	ENSG00000211456.13	ENST00000455997.5:ENST00000418611.5:ENST00000672477.1:ENST00000441228.5:ENST00000389061.10:ENST00000672858.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	40	2	2.84569	3.73229	4.61889	0.0166646	0.0121137	0.102621	0.0962599
chr2	85008736	85008836	820639	0	+	0.43	(0.408,0.44]	chr2	91419	361	INTRON	INTRON	KCMF1	ENSG00000176407.18	ENST00000456682.1:ENST00000409785.9:ENST00000428691.5:ENST00000453448.1	protein_coding	protein_coding	protein_coding	protein_coding	3	108	2	3.5591	3.732285	3.90547	2.03612e-4	4.27819e-5	0.0129859	0.00529798
chr1	243172396	243172496	667878	0	-	0.51	(0.476,0.515]	chr1	79263	3	SS5_PROX	SS5_PROX:INTRON	CEP170	ENSG00000143702.16	ENST00000366544.5:ENST00000366543.5:ENST00000366542.6:ENST00000336415.8:ENST00000518289.5:ENST00000522895.1:ENST00000461671.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	39	2	2.40608	3.732275	5.05847	0.0425709	0.00108081	0.148082	0.0300133
chr11	65191533	65191633	4804487	0	+	0.49	(0.476,0.515]	chr11	446277	24	INTRON	INTRON	CAPN1	ENSG00000014216.16	ENST00000533820.5:ENST00000533129.5:ENST00000524773.5:ENST00000279247.11:ENST00000527323.5:ENST00000533079.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	39	2	2.40608	3.732275	5.05847	0.0425709	0.00108081	0.148082	0.0300133
chr21	10468744	10468843	7368687	0	+	0.292929	(0.28,0.32]	chr21	751997	34	INTRON	INTRON	BAGE2	ENSG00000187172.15	ENST00000470054.5:ENST00000496773.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	1	42	2	2.53522	3.732255	4.92929	0.0310424	0.0098607	0.143457	0.0838128
chr8	140948165	140948265	4079544	0	-	0.3	(0.28,0.32]	chr8	370573	1	SS5_PROX	SS5_PROX:INTRON	PTK2	ENSG00000169398.20	ENST00000696786.1:ENST00000522684.5:ENST00000395218.3:ENST00000521059.5:ENST00000519993.5:ENST00000340930.7:ENST00000519419.5:ENST00000524357.5:ENST00000521791.5:ENST00000523067.5:ENST00000520828.5:ENST00000519881.5:ENST00000520892.5:ENST00000523803.5:ENST00000521907.5:ENST00000517453.5:ENST00000520045.5:ENST00000521332.5:ENST00000524040.5:ENST00000523679.1:ENST00000524257.5:ENST00000523797.1:ENST00000519635.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	42	2	2.53522	3.732255	4.92929	0.0310424	0.0098607	0.143457	0.0838128
chr6	57095613	57095711	2878110	0	+	0.306122	(0.28,0.32]	chr6	273232	22	INTRON	INTRON	ZNF451	ENSG00000112200.17	ENST00000515290.5:ENST00000510483.5:ENST00000357489.7:ENST00000370708.8:ENST00000370702.5:ENST00000444273.6:ENST00000370711.9:ENST00000508603.5:ENST00000370706.9:ENST00000491832.6:ENST00000370710.10:ENST00000502749.1:ENST00000504603.1:ENST00000509071.5:ENST00000510989.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	187	2	3.20952	3.732245	4.25497	7.78524e-5	3.21422e-5	0.00787736	0.00452387
chrX	130410366	130410462	7722685	0	+	0.552083	(0.515,0.57]	chrX	789993	6	INTRON	INTRON	RBMX2	ENSG00000134597.17	ENST00000305536.11:ENST00000469953.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	48	2	1.9459	3.732105	5.51831	0.0429089	6.99834e-5	0.148082	0.00692586
chr3	50016111	50016211	1423721	0	+	0.38	(0.378,0.408]	chr3	149994	162	INTRON	INTRON	RBM6	ENSG00000004534.15	ENST00000442092.5:ENST00000443081.5:ENST00000419610.5:ENST00000441115.5:ENST00000422955.5:ENST00000454079.5:ENST00000266022.9:ENST00000425608.5:ENST00000434592.5:ENST00000464013.5:ENST00000483350.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	55	2	2.35103	3.7320900000000004	5.11315	0.014158	9.26795e-4	0.0959618	0.0278442
chr1	89848657	89848757	159802	0	+	0.44	(0.408,0.44]	chr1	17285	16	INTRON	INTRON	LRRC8D	ENSG00000171492.14	ENST00000525774.5:ENST00000337338.9:ENST00000394593.7:ENST00000532201.5:ENST00000414841.1:ENST00000527156.1:ENST00000441269.2	protein_coding	protein_coding	protein_coding	protein_coding	7	238	2	3.68929	3.732055	3.77482	6.15871e-6	3.07103e-7	0.00186183	2.76446e-4
chr12	108667828	108667927	5406135	0	-	0.393939	(0.378,0.408]	chr12	516004	53	INTRON	INTRON	CORO1C	ENSG00000110880.11	ENST00000261401.8:ENST00000420959.6:ENST00000541050.5:ENST00000549384.5:ENST00000421578.6:ENST00000550542.5:ENST00000549772.5:ENST00000552871.5:ENST00000547294.5:ENST00000550032.5:ENST00000551550.5:ENST00000546571.5:ENST00000551044.1:ENST00000547170.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	38	2	2.45932	3.731955	5.00459	0.0346754	0.00371142	0.148144	0.0535094
chr19	47635186	47635286	7086023	0	+	0.38	(0.378,0.408]	chr19	709045	272	INTRON	INTRON	ENSG00000268746	ENSG00000268746.1	ENST00000599924.1	lncRNA	lncRNA	lncRNA	lncRNA	1	38	2	2.45932	3.731955	5.00459	0.0346754	0.00371142	0.148144	0.0535094
chr5	109808675	109808775	2450212	0	+	0.39	(0.378,0.408]	chr5	234656	40	INTRON	INTRON	MAN2A1	ENSG00000112893.10	ENST00000261483.5:ENST00000502261.5:ENST00000508043.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	38	2	2.45932	3.731955	5.00459	0.0346754	0.00371142	0.148144	0.0535094
chr16	66666659	66666759	6501609	0	-	0.34	(0.32,0.35]	chr16	628968	297	INTRON	INTRON	CMTM4	ENSG00000183723.13	ENST00000394106.7:ENST00000330687.8:ENST00000563952.1	protein_coding	protein_coding	protein_coding	protein_coding	1	40	2	2.56618	3.73193	4.89768	0.0274185	0.00793135	0.136498	0.076155
chr9	131129477	131129577	4215660	0	+	0.34	(0.32,0.35]	chr9	386518	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	NUP214	ENSG00000126883.19	ENST00000695497.1:ENST00000695498.1:ENST00000695496.1:ENST00000695495.1:ENST00000695494.1:ENST00000695493.1:ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000525561.2:ENST00000651022.1:ENST00000651639.1:ENST00000695499.1:ENST00000526412.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	40	2	2.56618	3.73193	4.89768	0.0274185	0.00793135	0.136498	0.076155
chr9	91855972	91856072	4284322	0	-	0.35	(0.32,0.35]	chr9	393909	798	INTRON	INTRON	ROR2	ENSG00000169071.15	ENST00000375715.5:ENST00000375708.4:ENST00000550066.5:ENST00000495386.5:ENST00000546883.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	44	2	2.74415	3.7319249999999995	4.7197	0.0198267	0.00568521	0.109608	0.0678837
chr7	30630851	30630950	3301819	0	+	0.323232	(0.32,0.35]	chr7	306608	23	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	GARS1	ENSG00000106105.15	ENST00000675051.1:ENST00000470392.2:ENST00000674643.1:ENST00000675529.1:ENST00000674807.1:ENST00000675810.1:ENST00000676088.1:ENST00000674815.1:ENST00000676403.1:ENST00000485784.2:ENST00000676210.1:ENST00000389266.8:ENST00000675693.1:ENST00000676259.1:ENST00000675651.1:ENST00000674616.1:ENST00000674737.1:ENST00000675859.1:ENST00000676140.1:ENST00000674969.1:ENST00000676164.1:ENST00000675886.1:ENST00000444666.6:ENST00000675587.1:ENST00000674851.1:ENST00000675863.1:ENST00000465748.2:ENST00000496643.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	68	2	2.50411	3.73191	4.95971	0.00663522	0.00267989	0.0703181	0.0478767
chr1	156313904	156314002	566459	0	-	0.510204	(0.476,0.515]	chr1	67981	13	INTRON	INTRON	CCT3	ENSG00000163468.15	ENST00000295688.8:ENST00000368258.7:ENST00000368259.6:ENST00000368261.7:ENST00000368262.7:ENST00000472765.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	39	2	2.7646	3.73189	4.69918	0.0162075	0.00400966	0.101453	0.057767
chr11	5324197	5324297	4896453	0	-	0.51	(0.476,0.515]	chr11	459157	1	CDS_START	CDS_START:CDS:EXON_MRNA:INTRON	HBG2:ENSG00000239920:HBE1:OR51B5:OR51B2	ENSG00000196565.15:ENSG00000239920.2:ENSG00000213931.7:ENSG00000167355.8:ENSG00000279012.2	ENST00000380252.6:ENST00000380259.7:ENST00000646569.1:ENST00000643199.1:ENST00000292896.3:ENST00000380237.5:ENST00000420726.6:ENST00000420465.6:ENST00000624187.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	39	2	2.7646	3.73189	4.69918	0.0162075	0.00400966	0.101453	0.057767
chr12	108718157	108718257	5406652	0	-	0.5	(0.476,0.515]	chr12	516035	152	INTRON	INTRON	CORO1C	ENSG00000110880.11	ENST00000261401.8:ENST00000541050.5:ENST00000549384.5:ENST00000550542.5:ENST00000552871.5:ENST00000551550.5:ENST00000546571.5:ENST00000551044.1:ENST00000551059.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	39	2	2.7646	3.73189	4.69918	0.0162075	0.00400966	0.101453	0.057767
chr19	17176141	17176241	7028964	0	+	0.5	(0.476,0.515]	chr19	699657	4	SS5_PROX	SS5_PROX:INTRON	MYO9B	ENSG00000099331.14	ENST00000682292.1:ENST00000595618.5:ENST00000594824.5:ENST00000397274.6:ENST00000595641.5:ENST00000594971.5:ENST00000598101.1:ENST00000602177.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	39	2	2.7646	3.73189	4.69918	0.0162075	0.00400966	0.101453	0.057767
chr9	112311783	112311883	4317742	0	-	0.5	(0.476,0.515]	chr9	397079	135	INTRON	INTRON	PTBP3	ENSG00000119314.16	ENST00000334318.10:ENST00000458258.5:ENST00000374257.6:ENST00000374255.6:ENST00000343327.6:ENST00000487997.1:ENST00000210227.4:ENST00000450374.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	39	2	2.7646	3.73189	4.69918	0.0162075	0.00400966	0.101453	0.057767
chr22	28735705	28735801	7573453	0	-	0.53125	(0.515,0.57]	chr22	774425	6	INTRON	INTRON	CHEK2	ENSG00000183765.23	ENST00000416671.5:ENST00000348295.7:ENST00000404276.6:ENST00000425190.7:ENST00000649563.1:ENST00000405598.5:ENST00000382580.6:ENST00000650281.1:ENST00000433028.6:ENST00000439200.5:ENST00000650233.1:ENST00000398017.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	61	2	1.89462	3.731845	5.56907	0.0139002	1.36543e-4	0.10247	0.0106702
chr7	152298470	152298570	3679907	0	-	0.36	(0.35,0.378]	chr7	341623	117	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000684262.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	117	2	3.61985	3.7318350000000002	3.84382	3.33157e-4	3.53207e-5	0.016912	0.00474674
chr5	139294282	139294364	2499384	0	+	0.47561	(0.44,0.476]	chr5	238907	2	SS5_PROX	SS5_PROX:INTRON	MATR3	ENSG00000280987.4:ENSG00000015479.20	ENST00000509990.5:ENST00000506147.5:ENST00000512107.5:ENST00000361059.7:ENST00000394800.6:ENST00000502929.5:ENST00000504203.5:ENST00000514694.5:ENST00000509644.5:ENST00000505016.2:ENST00000502394.1:ENST00000512876.5:ENST00000513678.5:ENST00000513121.1:ENST00000504045.5:ENST00000504311.5:ENST00000502499.5:ENST00000510056.5:ENST00000511249.5:ENST00000394805.8:ENST00000507860.1:ENST00000509918.5:ENST00000503811.5:ENST00000511978.5:ENST00000618441.5:ENST00000508689.1:ENST00000514528.5:ENST00000504643.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	49	2	2.49823	3.7315699999999996	4.96491	0.00718224	0.0034249	0.0756118	0.0517761
chr2	112650286	112650384	852106	0	+	0.459184	(0.44,0.476]	chr2	95574	22	INTRON	INTRON	SLC20A1	ENSG00000144136.11	ENST00000272542.8:ENST00000423633.5:ENST00000498224.5:ENST00000433924.5:ENST00000456264.5:ENST00000413135.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	108	2	3.2235	3.7315250000000004	4.23955	3.98783e-4	1.88744e-5	0.0185763	0.00332085
chr3	125511937	125512037	1807782	0	-	0.35	(0.32,0.35]	chr3	181558	68	INTRON	INTRON	SNX4	ENSG00000114520.11	ENST00000251775.9:ENST00000471751.5:ENST00000473417.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	55	2	2.6297	3.7312849999999997	4.83287	0.0095071	0.00476699	0.0817766	0.0636201
chr10	21635717	21635817	4405437	0	+	0.43	(0.408,0.44]	chr10	406487	106	INTRON	INTRON	MLLT10	ENSG00000078403.17	ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000651298.1:ENST00000377059.7:ENST00000652258.1:ENST00000651382.1:ENST00000438473.6:ENST00000650921.1:ENST00000651405.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	40	2	2.27698	3.73117	5.18536	0.0583528	6.17381e-4	0.167723	0.0223951
chrX	111689578	111689677	7702102	0	+	0.323232	(0.32,0.35]	chrX	788220	5	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	ALG13	ENSG00000101901.12	ENST00000487141.5:ENST00000371979.7:ENST00000394780.8:ENST00000251943.8:ENST00000610588.4:ENST00000621367.4:ENST00000622997.3:ENST00000624161.3:ENST00000636363.1:ENST00000624881.3:ENST00000495283.5:ENST00000486353.5:ENST00000623144.3:ENST00000470971.5:ENST00000623148.3:ENST00000471924.5:ENST00000436609.5:ENST00000470704.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	74	2	1.72405	3.73114	5.73823	0.0275418	4.5635e-4	0.137011	0.0196892
chr3	172158662	172158762	1560741	0	+	0.35	(0.32,0.35]	chr3	161551	97	INTRON	INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000421757.5:ENST00000469491.5:ENST00000336824.8:ENST00000423424.5:ENST00000416957.5:ENST00000478016.1:ENST00000443501.1:ENST00000476794.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	65	2	2.22655	3.730875	5.2352	0.00823133	0.0028268	0.0812969	0.0472361
chr1	236267876	236267975	665015	0	-	0.515152	(0.476,0.515]	chr1	78733	29	EXON_MRNA	EXON_MRNA:INTRON	ERO1B	ENSG00000086619.15	ENST00000354619.10:ENST00000687487.1:ENST00000689343.1:ENST00000691519.1:ENST00000686625.1:ENST00000366589.1:ENST00000687604.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	73	2	2.48917	3.7308500000000002	4.97253	0.00311573	0.00110233	0.0498063	0.03038
chr13	95733349	95733449	5517761	0	+	0.41	(0.408,0.44]	chr13	527661	77	INTRON	INTRON	DNAJC3	ENSG00000102580.15	ENST00000602402.6:ENST00000376795.6	protein_coding	protein_coding	protein_coding	protein_coding	2	53	2	2.21857	3.73062	5.24267	0.0209591	4.83767e-4	0.112046	0.0199261
chr2	87514319	87514419	826518	0	+	0.33	(0.32,0.35]	chr2	92446	46	INTRON	INTRON	CYTOR:ENSG00000284879	ENSG00000222041.12:ENSG00000284879.1	ENST00000642796.1:ENST00000643589.1:ENST00000642451.1:ENST00000646386.1:ENST00000644478.1:ENST00000409139.6:ENST00000331944.10:ENST00000644125.1:ENST00000643743.1:ENST00000644577.1:ENST00000643276.1:ENST00000409898.2:ENST00000419680.6:ENST00000644976.1:ENST00000643070.1:ENST00000646855.1:ENST00000414584.1:ENST00000455131.5:ENST00000646636.1:ENST00000642293.1:ENST00000423846.5:ENST00000644040.1:ENST00000645138.1:ENST00000437561.2:ENST00000629257.1:ENST00000645729.1:ENST00000413202.1	lncRNA	lncRNA	lncRNA	lncRNA	2	55	2	1.95271	3.73062	5.50853	0.0431213	0.0010959399999999999	0.162255	0.0304174
chr15	82355973	82356073	6075540	0	+	0.26	[0,0.28]	chr15	578727	2	INTRON	INTRON	UBE2Q2P2	ENSG00000259429.5	ENST00000618775.4	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	1	50	2	2.20927	3.730525	5.25178	0.0794763	0.0022031	0.19979	0.0435144
chr11	60065010	60065106	4795754	0	+	0.416667	(0.408,0.44]	chr11	444053	3	INTRON	INTRON	MS4A3	ENSG00000149516.14	ENST00000395032.6:ENST00000358152.6:ENST00000278865.8:ENST00000525686.1:ENST00000534744.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	40	2	2.84077	3.73043	4.62009	0.0132196	0.00504155	0.0940535	0.0646039
chr17	42968472	42968568	6774775	0	-	0.4375	(0.408,0.44]	chr17	667606	5	UTR3	UTR3:EXON_MRNA:INTRON	PTGES3L-AARSD1:PTGES3L	ENSG00000108825.18:ENSG00000267060.7	ENST00000360221.8:ENST00000409399.6:ENST00000409103.5:ENST00000421990.7:ENST00000423601.2:ENST00000452752.5:ENST00000454303.1:ENST00000424284.5:ENST00000591916.7:ENST00000409446.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	40	2	2.84077	3.73043	4.62009	0.0132196	0.00504155	0.0940535	0.0646039
chr7	100690452	100690552	3587512	0	-	0.44	(0.408,0.44]	chr7	334643	5	INTRON	INTRON	GIGYF1	ENSG00000146830.11	ENST00000678049.1:ENST00000646601.1:ENST00000643385.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	40	2	2.84077	3.73043	4.62009	0.0132196	0.00504155	0.0940535	0.0646039
chr12	76069983	76070081	5370075	0	-	0.316327	(0.28,0.32]	chr12	512322	6	INTRON	INTRON	NAP1L1	ENSG00000187109.15	ENST00000618691.5:ENST00000393263.7:ENST00000431879.7:ENST00000547773.5:ENST00000544816.5:ENST00000542344.5:ENST00000535020.6:ENST00000549596.5:ENST00000552342.5:ENST00000548044.5:ENST00000550934.5:ENST00000551992.5:ENST00000548273.5:ENST00000551600.5:ENST00000547704.5:ENST00000549988.5:ENST00000547479.5:ENST00000549479.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	78	2	1.90241	3.7304299999999997	5.55845	0.0157236	0.00141854	0.109464	0.0340865
chr3	194421742	194421840	1890515	0	-	0.316327	(0.28,0.32]	chr3	189108	14	INTRON	INTRON	ATP13A3	ENSG00000133657.17	ENST00000687055.1:ENST00000645538.1:ENST00000645319.2:ENST00000690810.1:ENST00000429136.7:ENST00000645621.1:ENST00000685123.1:ENST00000642744.2:ENST00000439040.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	78	2	1.90241	3.7304299999999997	5.55845	0.0157236	0.00141854	0.109464	0.0340865
chr9	5001596	5001695	4095986	0	+	0.282828	(0.28,0.32]	chr9	373235	152	INTRON	INTRON	JAK2	ENSG00000096968.14	ENST00000636127.1:ENST00000476574.5:ENST00000381652.4	protein_coding	protein_coding	protein_coding	protein_coding	4	78	2	1.90241	3.7304299999999997	5.55845	0.0157236	0.00141854	0.109464	0.0340865
chr1	176079653	176079752	590425	0	-	0.222222	[0,0.28]	chr1	70908	330	INTRON	INTRON	COP1	ENSG00000143207.21	ENST00000367669.8:ENST00000367667.5:ENST00000461830.6:ENST00000367666.5:ENST00000649803.1:ENST00000308769.12:ENST00000459744.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	50	2	2.54624	3.73019	4.91414	0.0388449	0.0064519	0.143072	0.0730725
chr4	119463479	119463578	2026438	0	+	0.282828	(0.28,0.32]	chr4	201583	1	INTRON	INTRON	SEPTIN7P14	ENSG00000245958.7	ENST00000686002.1:ENST00000689183.1:ENST00000688315.1:ENST00000688480.1:ENST00000688857.1:ENST00000686202.1:ENST00000693650.1:ENST00000692945.1:ENST00000502760.2:ENST00000508519.6:ENST00000510011.6:ENST00000693497.1:ENST00000685974.1:ENST00000692409.1:ENST00000692642.1:ENST00000690731.1:ENST00000686925.1:ENST00000685525.1:ENST00000685769.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	1	46	2	2.2609	3.72966	5.19842	0.0671429	0.00152333	0.183051	0.0360297
chr19	1634897	1634996	7112937	0	-	0.474747	(0.44,0.476]	chr19	714651	21	INTRON	INTRON	TCF3	ENSG00000071564.17	ENST00000344749.9:ENST00000611869.5:ENST00000262965.12:ENST00000588136.7:ENST00000453954.6:ENST00000395423.7:ENST00000587235.6:ENST00000586318.1	protein_coding	protein_coding	protein_coding	protein_coding	1	39	2	2.46135	3.729585	4.99782	0.0374637	0.0013223	0.140008	0.0333932
chr21	44047295	44047394	7415384	0	+	0.454545	(0.44,0.476]	chr21	755795	90	INTRON	INTRON	TRAPPC10	ENSG00000160218.13	ENST00000291574.9:ENST00000380221.7:ENST00000422875.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	39	2	2.46135	3.729585	4.99782	0.0374637	0.0013223	0.140008	0.0333932
chr16	81473788	81473888	6405287	0	+	0.34	(0.32,0.35]	chr16	615026	279	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8	protein_coding	protein_coding	protein_coding	protein_coding	5	173	2	2.69711	3.72947	4.76183	7.57212e-4	1.17968e-6	0.0251942	6.27623e-4
chr11	66626269	66626360	4810898	0	+	0.494505	(0.476,0.515]	chr11	447873	2	SS3_PROX	SS3_PROX:INTRON	RBM14-RBM4:RBM14	ENSG00000248643.5:ENSG00000239306.5	ENST00000412278.2:ENST00000393979.3:ENST00000511114.1:ENST00000310137.5:ENST00000421355.1:ENST00000500635.2:ENST00000409738.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	107	2	3.59389	3.7294549999999997	3.86502	2.2858e-4	3.55544e-5	0.0138641	0.00476902
chr16	80986461	80986559	6530487	0	-	0.27551	[0,0.28]	chr16	632644	25	INTRON	INTRON	CMC2	ENSG00000103121.9	ENST00000219400.8:ENST00000563779.5:ENST00000486645.5:ENST00000570195.5:ENST00000566047.5:ENST00000561614.5:ENST00000566231.5:ENST00000569187.5:ENST00000570086.5:ENST00000564249.5:ENST00000565650.5:ENST00000567593.5:ENST00000568228.5:ENST00000565914.5:ENST00000565108.5:ENST00000565925.5:ENST00000564174.5:ENST00000565613.5:ENST00000569666.5:ENST00000562713.3:ENST00000562828.5:ENST00000630396.1:ENST00000565514.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	61	2	2.15457	3.729405	5.30424	0.0269306	0.00584781	0.135288	0.0667594
chr10	6166908	6167008	4386214	0	+	0.49	(0.476,0.515]	chr10	404834	25	INTRON	INTRON	PFKFB3	ENSG00000170525.21	ENST00000379789.8:ENST00000536985.6:ENST00000639949.1	protein_coding	protein_coding	protein_coding	protein_coding	2	84	2	3.40003	3.7293600000000002	4.05869	0.00139193	8.7207e-5	0.0341261	0.00839538
chrX	24796206	24796305	7632742	0	+	0.444444	(0.44,0.476]	chrX	781739	13	INTRON	INTRON	POLA1	ENSG00000101868.13	ENST00000672178.1:ENST00000379068.8:ENST00000379059.7:ENST00000611764.2:ENST00000480125.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	39	2	2.67572	3.7293250000000002	4.78293	0.0212064	0.00292033	0.113017	0.0494641
chr1	109375384	109375484	520794	0	-	0.66	(0.57,1]	chr1	61195	54	INTRON	INTRON	SORT1	ENSG00000134243.12	ENST00000538502.5:ENST00000256637.8:ENST00000493736.5:ENST00000482236.5:ENST00000633956.1:ENST00000471996.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	25	2	2.78409	3.72926	4.67443	0.0116033	8.07515e-4	0.0889104	0.0258804
chr19	10723342	10723442	7013822	0	+	0.6	(0.57,1]	chr19	696920	43	INTRON	INTRON	DNM2	ENSG00000079805.19	ENST00000683738.1:ENST00000682285.1:ENST00000682524.1:ENST00000355667.11:ENST00000389253.9:ENST00000585892.5:ENST00000359692.10:ENST00000408974.8:ENST00000586939.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	25	2	2.78409	3.72926	4.67443	0.0116033	8.07515e-4	0.0889104	0.0258804
chr3	52482313	52482413	1428543	0	+	0.62	(0.57,1]	chr3	150891	5	INTRON	INTRON	NISCH	ENSG00000010322.16	ENST00000479054.5:ENST00000345716.9:ENST00000489895.5:ENST00000485765.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	25	2	2.78409	3.72926	4.67443	0.0116033	8.07515e-4	0.0889104	0.0258804
chr14	34962630	34962730	5868970	0	-	0.29	(0.28,0.32]	chr14	557461	73	INTRON	INTRON	SRP54-AS1	ENSG00000258704.7	ENST00000692503.1:ENST00000690110.1:ENST00000690001.1:ENST00000688072.1:ENST00000693002.1:ENST00000556355.5:ENST00000555015.5:ENST00000693259.1:ENST00000636540.1	transcribed_unitary_pseudogene	processed_transcript	transcribed_unitary_pseudogene	processed_transcript:transcribed_unitary_pseudogene	1	46	2	2.62686	3.729255	4.83165	0.0289217	0.00527257	0.1274	0.0656295
chr2	39100943	39101043	1102137	0	-	0.29	(0.28,0.32]	chr2	118304	26	INTRON	INTRON	SOS1	ENSG00000115904.15	ENST00000692089.1:ENST00000402219.8:ENST00000690876.1:ENST00000395038.6:ENST00000691229.1:ENST00000689668.1:ENST00000690679.1:ENST00000461545.2:ENST00000451331.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	46	2	2.62686	3.729255	4.83165	0.0289217	0.00527257	0.1274	0.0656295
chr20	3975499	3975599	7309007	0	-	0.31	(0.28,0.32]	chr20	744300	7	INTRON	INTRON	RNF24	ENSG00000101236.17	ENST00000336095.10:ENST00000358395.11:ENST00000545616.2	protein_coding	protein_coding	protein_coding	protein_coding	1	46	2	2.62686	3.729255	4.83165	0.0289217	0.00527257	0.1274	0.0656295
chr4	86525058	86525158	2196701	0	-	0.54	(0.515,0.57]	chr4	215625	672	INTRON	INTRON	MAPK10	ENSG00000109339.24	ENST00000641051.1:ENST00000641050.1:ENST00000641737.1:ENST00000641391.1:ENST00000641831.1:ENST00000641157.1:ENST00000513186.7:ENST00000515400.3:ENST00000513839.5:ENST00000502302.6:ENST00000506773.7:ENST00000640527.1:ENST00000512046.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	35	2	2.60899	3.7291749999999997	4.84936	0.0232669	0.00146032	0.118148	0.0349875
chr5	127020627	127020727	2714459	0	-	0.45	(0.44,0.476]	chr5	255278	739	INTRON	INTRON	MARCHF3	ENSG00000173926.6	ENST00000308660.6:ENST00000502289.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	81	2	3.39322	3.7291600000000003	4.0651	0.00187283	5.16491e-5	0.0390476	0.00585477
chr16	85366046	85366146	6413490	0	+	0.66	(0.57,1]	chr16	615465	67	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	1	25	2	2.89463	3.72914	4.56365	0.00788262	0.00129848	0.076155	0.0333764
chr9	72178642	72178742	4141558	0	+	0.59	(0.57,1]	chr9	377412	286	INTRON	INTRON	GDA	ENSG00000119125.17	ENST00000545168.5:ENST00000238018.8:ENST00000358399.8:ENST00000376986.5:ENST00000475764.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	25	2	2.89463	3.72914	4.56365	0.00788262	0.00129848	0.076155	0.0333764
chr11	33283618	33283718	4766884	0	+	0.41	(0.408,0.44]	chr11	440839	246	INTRON	INTRON	HIPK3	ENSG00000110422.12	ENST00000525975.5:ENST00000303296.9:ENST00000379016.7:ENST00000456517.2:ENST00000531504.5	protein_coding	protein_coding	protein_coding	protein_coding	3	59	2	2.26617	3.729095	5.19202	0.00649402	0.0016671	0.0734343	0.0369207
chr1	8720188	8720288	372808	0	-	0.53	(0.515,0.57]	chr1	43545	171	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000656437.1:ENST00000659924.1:ENST00000480342.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	35	2	2.68833	3.7290850000000004	4.76984	0.0184931	0.00198034	0.108861	0.0411469
chr10	103191138	103191238	4683462	0	-	0.57	(0.515,0.57]	chr10	432426	35	INTRON	INTRON	NT5C2	ENSG00000076685.19	ENST00000675164.1:ENST00000343289.9:ENST00000404739.8:ENST00000675020.1:ENST00000674860.1:ENST00000676449.1:ENST00000676428.1:ENST00000674728.1:ENST00000675811.1:ENST00000369857.9:ENST00000675436.1:ENST00000674696.1:ENST00000675326.1:ENST00000675645.1:ENST00000470299.2:ENST00000452156.5:ENST00000461461.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	35	2	2.68833	3.7290850000000004	4.76984	0.0184931	0.00198034	0.108861	0.0411469
chr19	34276181	34276281	7051603	0	+	0.52	(0.515,0.57]	chr19	703254	102	INTRON	INTRON	GARRE1	ENSG00000166398.14	ENST00000588470.5:ENST00000299505.8:ENST00000589583.5:ENST00000588338.6:ENST00000592124.1:ENST00000585833.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	35	2	2.68833	3.7290850000000004	4.76984	0.0184931	0.00198034	0.108861	0.0411469
chr6	15511707	15511804	2825619	0	+	0.525773	(0.515,0.57]	chr6	265266	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	JARID2	ENSG00000008083.14	ENST00000341776.7:ENST00000397311.4	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	2.68833	3.7290850000000004	4.76984	0.0184931	0.00198034	0.108861	0.0411469
chrX	98752261	98752361	7692490	0	+	0.54	(0.515,0.57]	chrX	787209	203	INTRON	INTRON	ENSG00000281566	ENSG00000281566.3	ENST00000649508.1:ENST00000626665.3:ENST00000627700.2	lncRNA	lncRNA	lncRNA	lncRNA	1	35	2	2.68833	3.7290850000000004	4.76984	0.0184931	0.00198034	0.108861	0.0411469
chr4	98372137	98372237	2001970	0	+	0.49	(0.476,0.515]	chr4	199710	192	INTRON	INTRON	RAP1GDS1	ENSG00000138698.15	ENST00000408927.8:ENST00000509011.5:ENST00000380158.8:ENST00000264572.11:ENST00000505378.5:ENST00000508213.5:ENST00000512857.5:ENST00000511379.5:ENST00000514122.5:ENST00000453712.6:ENST00000511212.5:ENST00000510870.5:ENST00000507303.5:ENST00000408900.7:ENST00000339360.9:ENST00000503745.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	49	2	2.48551	3.7290200000000002	4.97253	0.00756632	0.00311573	0.0773151	0.0498063
chr7	140463029	140463129	3661462	0	-	0.5	(0.476,0.515]	chr7	339916	24	INTRON	INTRON	MKRN1	ENSG00000133606.11	ENST00000255977.7:ENST00000475010.5:ENST00000495305.5:ENST00000474576.5:ENST00000480552.5:ENST00000496169.5:ENST00000443720.6:ENST00000471104.5:ENST00000467513.5:ENST00000494939.1:ENST00000498535.1:ENST00000473444.1:ENST00000475180.5:ENST00000481705.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	49	2	2.48551	3.7290200000000002	4.97253	0.00756632	0.00311573	0.0773151	0.0498063
chr12	71762543	71762642	5168800	0	+	0.525253	(0.515,0.57]	chr12	489646	69	INTRON	INTRON	RAB21	ENSG00000080371.6	ENST00000261263.5	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	3.25412	3.7289649999999996	4.20381	0.0189208	0.00224554	0.108861	0.0435144
chr6	132469750	132469850	3221925	0	-	0.55	(0.515,0.57]	chr6	299504	4	SS5_PROX	SS5_PROX:INTRON	STX7	ENSG00000079950.14	ENST00000367941.7:ENST00000367937.4	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	3.25412	3.7289649999999996	4.20381	0.0189208	0.00224554	0.108861	0.0435144
chr2	87799722	87799818	1172934	0	-	0.385417	(0.378,0.408]	chr2	125232	12	INTRON	INTRON	RGPD2	ENSG00000185304.16	ENST00000398146.5	protein_coding	protein_coding	protein_coding	protein_coding	3	60	2	2.22859	3.7289149999999998	5.22924	0.00763308	0.00172721	0.0777238	0.0374701
chr14	103405866	103405966	5825826	0	+	0.54	(0.515,0.57]	chr14	552794	2	INTRON	INTRON	MARK3	ENSG00000075413.19	ENST00000678179.1:ENST00000676838.1:ENST00000677348.1:ENST00000677404.1:ENST00000676694.1:ENST00000676938.1:ENST00000678619.1:ENST00000676897.1:ENST00000677214.1:ENST00000677942.1:ENST00000676830.1:ENST00000678999.1:ENST00000677228.1:ENST00000556744.2:ENST00000677104.1:ENST00000679330.1:ENST00000560417.6:ENST00000440884.7:ENST00000676475.1:ENST00000677035.1:ENST00000678022.1:ENST00000677560.1:ENST00000561314.6:ENST00000429436.7:ENST00000677118.1:ENST00000676564.1:ENST00000678169.1:ENST00000678175.1:ENST00000678897.1:ENST00000678278.1:ENST00000676645.1:ENST00000677829.1:ENST00000678302.1:ENST00000677133.1:ENST00000561164.2:ENST00000558223.6:ENST00000559328.6:ENST00000678207.1:ENST00000677360.1:ENST00000676905.1:ENST00000678343.1:ENST00000677347.1:ENST00000678071.1:ENST00000677432.1:ENST00000678237.1:ENST00000677604.1:ENST00000676518.1:ENST00000677051.1:ENST00000677857.1:ENST00000677869.1:ENST00000678423.1:ENST00000560603.6:ENST00000416682.6:ENST00000303622.13:ENST00000216288.11:ENST00000679105.1:ENST00000553942.5:ENST00000335102.9:ENST00000561225.1:ENST00000678091.1:ENST00000561071.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	112	2	3.418	3.72891	4.03982	6.5518e-5	1.18438e-5	0.00715707	0.0025447
chr8	31157730	31157830	3729207	0	+	0.48	(0.476,0.515]	chr8	346703	2	SS5_PROX	SS5_PROX:INTRON	WRN	ENSG00000165392.11	ENST00000650667.1:ENST00000298139.7:ENST00000521620.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	49	2	2.19809	3.72877	5.25945	0.020317	0.00111445	0.121522	0.0306328
chr12	121898648	121898746	5238280	0	+	0.469388	(0.44,0.476]	chr12	497279	15	EXON_MRNA	EXON_MRNA:INTRON	PSMD9	ENSG00000110801.14	ENST00000537407.5:ENST00000540962.5:ENST00000261817.6:ENST00000538613.5:ENST00000542602.1:ENST00000541212.6:ENST00000543699.5:ENST00000535293.5:ENST00000544724.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	37	2	3.02366	3.7287150000000002	4.43377	0.0162803	0.00603307	0.101453	0.0700813
chr16	71907254	71907354	6386724	0	+	0.45	(0.44,0.476]	chr16	614084	32	INTRON	INTRON	IST1	ENSG00000182149.21	ENST00000568581.5:ENST00000540296.5:ENST00000544564.5:ENST00000541571.6:ENST00000538104.5:ENST00000535424.5:ENST00000606369.5:ENST00000537613.5:ENST00000424485.6:ENST00000566536.5:ENST00000378799.11:ENST00000538565.5:ENST00000329908.12:ENST00000538850.5:ENST00000541918.5:ENST00000378798.9:ENST00000534994.5:ENST00000539186.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	37	2	3.02366	3.7287150000000002	4.43377	0.0162803	0.00603307	0.101453	0.0700813
chr22	17613918	17614016	7547672	0	-	0.459184	(0.44,0.476]	chr22	771450	2	INTRON	INTRON	ATP6V1E1	ENSG00000131100.13	ENST00000253413.10:ENST00000399796.6:ENST00000399798.6:ENST00000413576.1:ENST00000481365.5:ENST00000484653.5:ENST00000478963.5:ENST00000460085.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	37	2	3.02366	3.7287150000000002	4.43377	0.0162803	0.00603307	0.101453	0.0700813
chr7	129910808	129910907	3637549	0	-	0.464646	(0.44,0.476]	chr7	338216	295	INTRON	INTRON	UBE2H	ENSG00000186591.13	ENST00000355621.8:ENST00000649897.1:ENST00000473814.6:ENST00000496698.5:ENST00000472396.5:ENST00000480245.5:ENST00000490974.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	37	2	3.02366	3.7287150000000002	4.43377	0.0162803	0.00603307	0.101453	0.0700813
chr6	35377218	35377318	2852325	0	+	0.38	(0.378,0.408]	chr6	269491	297	INTRON	INTRON	PPARD	ENSG00000112033.14	ENST00000418635.6:ENST00000448077.6:ENST00000360694.8:ENST00000311565.4:ENST00000337400.6	protein_coding	protein_coding	protein_coding	protein_coding	2	50	2	2.51464	3.72857	4.9425	0.00684341	0.00452675	0.0748032	0.0595107
chr16	88728002	88728081	6539617	0	-	0.632911	(0.57,1]	chr16	633911	3	SS3_PROX	SS3_PROX:INTRON	PIEZO1	ENSG00000103335.22	ENST00000301015.14	protein_coding	protein_coding	protein_coding	protein_coding	2	45	2	3.6291	3.728555	3.82801	3.02868e-4	9.41714e-5	0.0160895	0.00813008
chr4	139330873	139330973	2049985	0	+	0.25	[0,0.28]	chr4	203286	283	INTRON	INTRON	NAA15	ENSG00000164134.13	ENST00000296543.10:ENST00000398947.1:ENST00000482087.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	45	2	2.63238	3.7283549999999996	4.82433	0.0259691	0.0200334	0.133676	0.109608
chr21	39309648	39309748	7465503	0	-	0.57	(0.515,0.57]	chr21	760568	107	INTRON	INTRON	BRWD1	ENSG00000185658.14	ENST00000333229.6:ENST00000342449.8:ENST00000380800.7:ENST00000341322.4:ENST00000470108.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	36	2	3.37125	3.728315	4.08538	0.0253843	0.00136343	0.12011	0.0339121
chr1	224930733	224930833	322362	0	+	0.49	(0.476,0.515]	chr1	37105	5	INTRON	INTRON	DNAH14	ENSG00000185842.16	ENST00000445597.6:ENST00000430092.5:ENST00000366850.7:ENST00000400952.7:ENST00000682510.1:ENST00000366849.5:ENST00000498360.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	52	2	2.16377	3.7282900000000003	5.29281	0.0243026	4.07635e-4	0.12011	0.0181306
chr11	47535247	47535346	4950224	0	-	0.272727	[0,0.28]	chr11	464246	106	INTRON	INTRON	CELF1	ENSG00000149187.19	ENST00000310513.10:ENST00000687097.1:ENST00000531165.5:ENST00000530151.5:ENST00000525841.5:ENST00000526419.1	protein_coding	protein_coding	protein_coding	protein_coding	1	45	2	2.57033	3.7282900000000003	4.88625	0.0305273	0.0173315	0.143385	0.104099
chr15	56962971	56963071	6032555	0	+	0.27	[0,0.28]	chr15	574663	415	INTRON	INTRON	TCF12	ENSG00000140262.18	ENST00000438423.6:ENST00000267811.9:ENST00000333725.10:ENST00000560190.5:ENST00000559609.5:ENST00000558908.5:ENST00000557843.5:ENST00000557947.5:ENST00000561152.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	45	2	2.57033	3.7282900000000003	4.88625	0.0305273	0.0173315	0.143385	0.104099
chr2	128169887	128169987	863289	0	+	0.27	[0,0.28]	chr2	96812	2	SS3_PROX	SS3_PROX:INTRON	UGGT1	ENSG00000136731.13	ENST00000259253.11:ENST00000438277.5:ENST00000376723.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	45	2	2.57033	3.7282900000000003	4.88625	0.0305273	0.0173315	0.143385	0.104099
chr15	58013757	58013857	6187017	0	-	0.26	[0,0.28]	chr15	589770	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ALDH1A2	ENSG00000128918.15	ENST00000537372.5:ENST00000249750.9:ENST00000347587.7:ENST00000430119.6:ENST00000558231.5:ENST00000559517.5:ENST00000559266.5:ENST00000561070.5:ENST00000558595.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	61	2	2.24546	3.7279999999999998	5.21054	0.0206502	0.00758653	0.122348	0.0749063
chr2	39746564	39746663	1104412	0	-	0.252525	[0,0.28]	chr2	118528	17	INTRON	INTRON	THUMPD2	ENSG00000138050.15	ENST00000460072.5:ENST00000505747.6:ENST00000378727.8:ENST00000530522.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	61	2	2.24546	3.7279999999999998	5.21054	0.0206502	0.00758653	0.122348	0.0749063
chr9	129502519	129502618	4209946	0	+	0.313131	(0.28,0.32]	chr9	385775	1	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	LINC00963	ENSG00000204054.14	ENST00000653047.1:ENST00000454968.5:ENST00000652803.1:ENST00000444184.6:ENST00000658785.1:ENST00000656664.1:ENST00000666282.1:ENST00000663727.1:ENST00000663000.1:ENST00000666041.1:ENST00000657306.1:ENST00000668074.1:ENST00000656234.1:ENST00000662331.1:ENST00000654822.1:ENST00000659188.1:ENST00000658175.1:ENST00000654204.1:ENST00000659535.1:ENST00000653700.1:ENST00000667047.1:ENST00000665998.1:ENST00000664811.1:ENST00000665880.1:ENST00000662047.1:ENST00000671609.1:ENST00000671555.1:ENST00000655787.1:ENST00000419300.3:ENST00000423918.5:ENST00000661101.1:ENST00000666559.1:ENST00000668919.1:ENST00000654131.1:ENST00000653386.1:ENST00000655962.1:ENST00000659690.1:ENST00000657389.1:ENST00000668206.1:ENST00000669088.1:ENST00000654286.1:ENST00000658999.1:ENST00000624138.4:ENST00000454635.6:ENST00000625171.4:ENST00000624390.1:ENST00000622972.3:ENST00000624009.3:ENST00000669210.1:ENST00000412141.2:ENST00000622680.2:ENST00000622120.2:ENST00000607931.1:ENST00000453213.2:ENST00000608272.2:ENST00000623185.4:ENST00000669939.1:ENST00000427778.1:ENST00000608669.1:ENST00000653436.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	2	64	2	2.36963	3.727925	5.08622	0.0157022	0.00227525	0.101453	0.0437013
chrX	74225307	74225407	7840924	0	-	0.25	[0,0.28]	chrX	799703	62	INTRON	INTRON	FTX	ENSG00000230590.12	ENST00000603672.5:ENST00000430772.6:ENST00000602776.6:ENST00000638681.1:ENST00000652319.1:ENST00000661133.1:ENST00000652071.1:ENST00000602812.6:ENST00000651703.1:ENST00000653018.1:ENST00000658448.1:ENST00000662240.1:ENST00000652527.1:ENST00000651451.1:ENST00000657611.1:ENST00000660481.1:ENST00000659574.1:ENST00000661084.1:ENST00000662494.1:ENST00000670936.1:ENST00000602420.6:ENST00000658203.1:ENST00000638985.1:ENST00000691187.1:ENST00000603037.2:ENST00000641360.1:ENST00000687056.1:ENST00000654870.2:ENST00000652540.1:ENST00000652331.2:ENST00000652013.1:ENST00000669263.1:ENST00000657070.1:ENST00000665069.1:ENST00000651936.1:ENST00000652496.1:ENST00000653874.2:ENST00000661335.1:ENST00000664123.1:ENST00000658439.1:ENST00000666535.1:ENST00000652970.1:ENST00000423992.3:ENST00000665313.2:ENST00000651140.1:ENST00000660100.1:ENST00000693483.1	lncRNA	lncRNA	lncRNA	lncRNA	2	61	2	2.10688	3.7278900000000004	5.3489	0.0307985	0.00514751	0.143385	0.062965
chr6	147673382	147673481	2990729	0	+	0.494949	(0.476,0.515]	chr6	280159	122	INTRON	INTRON	ENSG00000227681	ENSG00000227681.5	ENST00000427015.1:ENST00000432506.5	lncRNA	lncRNA	lncRNA	lncRNA	4	67	2	1.91368	3.72789	5.5421	0.0135123	3.56777e-4	0.101363	0.0175154
chr16	85516682	85516782	6414997	0	+	0.53	(0.515,0.57]	chr16	615465	1574	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	2.35125	3.7278649999999995	5.10448	0.0436431	0.0010345	0.162255	0.029231300000000002
chr7	138563186	138563286	3435682	0	+	0.52	(0.515,0.57]	chr7	320015	64	INTRON	INTRON	TRIM24	ENSG00000122779.18	ENST00000343526.9:ENST00000415680.6:ENST00000497516.5:ENST00000493595.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	35	2	2.35125	3.7278649999999995	5.10448	0.0436431	0.0010345	0.162255	0.029231300000000002
chr6	116685833	116685933	2945028	0	+	0.31	(0.28,0.32]	chr6	277192	39	INTRON	INTRON	KPNA5	ENSG00000196911.11	ENST00000413340.5:ENST00000368564.7:ENST00000356348.6	protein_coding	protein_coding	protein_coding	protein_coding	2	62	2	2.00989	3.7278599999999997	5.44583	0.0427801	5.8721e-4	0.148082	0.0220073
chr1	182391406	182391506	599067	0	-	0.67	(0.57,1]	chr1	71420	3	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	GLUL	ENSG00000135821.19	ENST00000331872.11:ENST00000311223.9:ENST00000339526.8:ENST00000463851.6:ENST00000484996.5:ENST00000489818.5:ENST00000480604.5:ENST00000462444.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	139	2	3.60182	3.72766	3.8535	1.87974e-7	7.34106e-8	2.01544e-4	1.14734e-4
chr1	52071627	52071727	101411	0	+	0.32	(0.28,0.32]	chr1	13440	3	SS5_PROX	SS5_PROX:INTRON	BTF3L4	ENSG00000134717.18	ENST00000477828.6:ENST00000489308.6:ENST00000526132.5:ENST00000313334.13:ENST00000472944.6:ENST00000484036.1:ENST00000533836.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	68	2	1.85772	3.727435	5.59715	0.0300199	0.00123856	0.142135	0.0322669
chr16	53070870	53070970	6350877	0	+	0.33	(0.32,0.35]	chr16	609666	154	INTRON	INTRON	CHD9	ENSG00000177200.18	ENST00000447540.6:ENST00000566029.5:ENST00000615216.4:ENST00000561869.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	42	2	2.21917	3.727185	5.2352	0.0641245	0.0028268	0.199279	0.0472361
chr11	66075220	66075319	4807917	0	+	0.484848	(0.476,0.515]	chr11	447330	40	INTRON	INTRON	PACS1	ENSG00000175115.13	ENST00000320580.9:ENST00000527224.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	63	2	2.05714	3.7271150000000004	5.39709	0.0156961	2.55871e-4	0.101453	0.0142249
chr2	169831051	169831150	908179	0	+	0.232323	[0,0.28]	chr2	100222	26	INTRON	INTRON	UBR3	ENSG00000144357.18	ENST00000272793.11	protein_coding	protein_coding	protein_coding	protein_coding	1	46	2	2.90797	3.727035	4.5461	0.0365918	0.0118539	0.138959	0.0962115
chr4	165340796	165340875	2079769	0	+	0.227848	[0,0.28]	chr4	205587	3	SS5_PROX	SS5_PROX:INTRON	MSMO1	ENSG00000052802.13	ENST00000261507.11:ENST00000393766.6	protein_coding	protein_coding	protein_coding	protein_coding	1	46	2	2.90797	3.727035	4.5461	0.0365918	0.0118539	0.138959	0.0962115
chr6	13681003	13681103	3058917	0	-	0.23	[0,0.28]	chr6	284542	218	INTRON	INTRON	RANBP9	ENSG00000010017.13	ENST00000011619.6	protein_coding	protein_coding	protein_coding	protein_coding	1	46	2	2.90797	3.727035	4.5461	0.0365918	0.0118539	0.138959	0.0962115
chr7	10551889	10551989	3482298	0	-	0.26	[0,0.28]	chr7	325766	988	INTRON	INTRON	MGC4859	ENSG00000283117.1	ENST00000634803.1	lncRNA	lncRNA	lncRNA	lncRNA	1	46	2	2.90797	3.727035	4.5461	0.0365918	0.0118539	0.138959	0.0962115
chr7	12379666	12379745	3485190	0	-	0.151899	[0,0.28]	chr7	325940	1	SS3_PROX	SS3_PROX:INTRON	VWDE	ENSG00000146530.15	ENST00000275358.8:ENST00000452576.6:ENST00000521169.5:ENST00000326715.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	46	2	2.90797	3.727035	4.5461	0.0365918	0.0118539	0.138959	0.0962115
chr19	47193944	47194043	7084516	0	+	0.434343	(0.408,0.44]	chr19	708804	133	INTRON	INTRON	SAE1	ENSG00000142230.13	ENST00000413379.7:ENST00000270225.12:ENST00000598840.5:ENST00000414294.6:ENST00000660039.1:ENST00000664120.1:ENST00000596995.1:ENST00000392776.3:ENST00000659110.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	67	2	1.84301	3.726845	5.61068	0.0174311	3.21002e-4	0.112689	0.0165409
chr2	167923230	167923330	1259035	0	-	0.42	(0.408,0.44]	chr2	133340	221	INTRON	INTRON	B3GALT1-AS1	ENSG00000235335.3	ENST00000430546.2:ENST00000657553.1:ENST00000670221.1:ENST00000436982.2	lncRNA	lncRNA	lncRNA	lncRNA	4	67	2	1.84301	3.726845	5.61068	0.0174311	3.21002e-4	0.112689	0.0165409
chr5	134165277	134165376	2726237	0	-	0.424242	(0.408,0.44]	chr5	256488	35	INTRON	INTRON	SKP1	ENSG00000113558.19	ENST00000353411.11:ENST00000522552.5:ENST00000521216.5:ENST00000517625.5:ENST00000523966.5:ENST00000522855.5:ENST00000328392.10:ENST00000519054.5:ENST00000519321.5:ENST00000520417.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	81	2	3.45019	3.72679	4.00339	0.00152664	7.25052e-5	0.0353936	0.00709818
chr13	52294906	52295004	5598528	0	-	0.510204	(0.476,0.515]	chr13	535227	30	INTRON	INTRON	TPTE2P2	ENSG00000272281.6	ENST00000605924.5:ENST00000403471.6	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	4	67	2	1.95469	3.72668	5.49867	0.0115753	4.28561e-4	0.0962115	0.0189958
chr6	136285261	136285359	3231082	0	-	0.346939	(0.32,0.35]	chr6	300408	22	INTRON	INTRON	BCLAF1	ENSG00000029363.17	ENST00000640069.1:ENST00000531224.6:ENST00000353331.8:ENST00000527536.5:ENST00000527613.5:ENST00000530767.5:ENST00000527759.5:ENST00000534269.5:ENST00000532384.5:ENST00000530429.5:ENST00000628517.2:ENST00000529826.5:ENST00000528229.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	103	2	1.45623	3.726495	5.99676	0.0247853	1.55894e-4	0.131909	0.0113565
chr22	20104378	20104478	7478480	0	+	0.66	(0.57,1]	chr22	762741	92	INTRON	INTRON	DGCR8	ENSG00000128191.16	ENST00000383024.6:ENST00000351989.8:ENST00000495826.5:ENST00000407755.1:ENST00000498171.5:ENST00000491892.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	59	2	3.39829	3.7264049999999997	4.05452	6.42666e-5	2.28989e-5	0.00711194	0.00373083
chr1	161019109	161019209	573368	0	-	0.4	(0.378,0.408]	chr1	69501	161	INTRON	INTRON	F11R:ENSG00000270149	ENSG00000158769.18:ENSG00000270149.5	ENST00000621309.4:ENST00000368026.11:ENST00000289779.7:ENST00000537746.1:ENST00000470694.1:ENST00000335772.3:ENST00000602966.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	40	2	2.53503	3.726395	4.91776	0.0319942	0.00196368	0.13174	0.0411469
chr4	67523274	67523373	2153291	0	-	0.40404	(0.378,0.408]	chr4	211991	34	INTRON	INTRON	CENPC	ENSG00000145241.11	ENST00000273853.11:ENST00000513216.5:ENST00000506882.5:ENST00000510189.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	40	2	2.53503	3.726395	4.91776	0.0319942	0.00196368	0.13174	0.0411469
chr7	137987363	137987463	3655594	0	-	0.36	(0.35,0.378]	chr7	339370	536	INTRON	INTRON	CREB3L2	ENSG00000182158.16	ENST00000330387.11:ENST00000456390.5:ENST00000452463.5	protein_coding	protein_coding	protein_coding	protein_coding	1	42	2	2.24535	3.72639	5.20743	0.0647516	7.78116e-4	0.179192	0.0256531
chr10	42350840	42350940	4603282	0	-	0.26	[0,0.28]	chr10	424077	99	INTRON	INTRON	ENSG00000215146	ENSG00000215146.5	ENST00000609841.1:ENST00000650175.1:ENST00000423987.2:ENST00000609034.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	1	46	2	2.29142	3.7263599999999997	5.1613	0.0592143	0.00866441	0.189982	0.0787025
chr6	57106252	57106351	2878220	0	+	0.272727	[0,0.28]	chr6	273248	43	UTR3	UTR3:EXON_MRNA:INTRON	ZNF451	ENSG00000112200.17	ENST00000515290.5:ENST00000510483.5:ENST00000357489.7:ENST00000370708.8:ENST00000370702.5:ENST00000444273.6:ENST00000370711.9:ENST00000370706.9:ENST00000491832.6:ENST00000502749.1:ENST00000504603.1:ENST00000509071.5:ENST00000509251.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	46	2	2.29142	3.7263599999999997	5.1613	0.0592143	0.00866441	0.189982	0.0787025
chr18	9149748	9149848	6869060	0	+	0.29	(0.28,0.32]	chr18	680561	115	INTRON	INTRON	ANKRD12	ENSG00000101745.17	ENST00000585234.5:ENST00000262126.9:ENST00000577992.1:ENST00000540578.6:ENST00000581635.5:ENST00000400020.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	43	2	3.02632	3.7263100000000002	4.4263	0.0330296	0.0071944	0.133816	0.0756118
chr7	157165323	157165420	3454205	0	+	0.298969	(0.28,0.32]	chr7	322906	4	INTRON	INTRON	UBE3C	ENSG00000009335.18	ENST00000611269.4:ENST00000348165.10:ENST00000389103.4:ENST00000430750.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	43	2	3.02632	3.7263100000000002	4.4263	0.0330296	0.0071944	0.133816	0.0756118
chr17	58778343	58778443	6637868	0	+	0.43	(0.408,0.44]	chr17	648237	215	INTRON	INTRON	PPM1E	ENSG00000175175.6	ENST00000308249.4	protein_coding	protein_coding	protein_coding	protein_coding	1	37	2	3.02513	3.72613	4.42713	0.0173083	0.0059965	0.104099	0.0700606
chr5	131540488	131540587	2718221	0	-	0.424242	(0.408,0.44]	chr5	255596	76	INTRON	INTRON	RAPGEF6	ENSG00000158987.22	ENST00000509018.6:ENST00000507093.5:ENST00000296859.10:ENST00000627212.2:ENST00000308008.10:ENST00000515170.5:ENST00000510071.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	37	2	3.02513	3.72613	4.42713	0.0173083	0.0059965	0.104099	0.0700606
chr7	105011807	105011904	3601069	0	-	0.381443	(0.378,0.408]	chr7	336036	2	EXON_LNCRNA	EXON_LNCRNA:INTRON	LINC01004	ENSG00000228393.5	ENST00000450686.1:ENST00000655204.2:ENST00000445184.1:ENST00000689371.1:ENST00000690819.1:ENST00000688692.1:ENST00000693045.1:ENST00000684783.1:ENST00000685115.1:ENST00000688127.1:ENST00000693130.1:ENST00000687259.1:ENST00000689586.1:ENST00000687408.1:ENST00000688097.1:ENST00000687900.1:ENST00000684829.1	lncRNA	lncRNA	lncRNA	lncRNA	12	316	2	2.89811	3.726045	4.55398	4.25895e-6	2.13053e-7	0.0013832	2.37829e-4
chr1	100288502	100288602	172499	0	+	0.54	(0.515,0.57]	chr1	18774	9	INTRON	INTRON	RTCA	ENSG00000137996.13	ENST00000370128.9:ENST00000260563.4	protein_coding	protein_coding	protein_coding	protein_coding	6	74	2	1.83953	3.726035	5.61254	0.00755489	1.10757e-4	0.0773151	0.00945003
chr15	89876110	89876210	6257662	0	-	0.51	(0.476,0.515]	chr15	597081	42	INTRON	INTRON	AP3S2:ARPIN-AP3S2	ENSG00000157823.17:ENSG00000250021.7	ENST00000336418.9:ENST00000398333.7:ENST00000423566.6:ENST00000558011.5:ENST00000560940.5:ENST00000557999.5:ENST00000558806.5:ENST00000559162.5:ENST00000558999.5:ENST00000559629.1:ENST00000558648.5:ENST00000560184.5:ENST00000560224.1:ENST00000560251.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	37	2	2.47949	3.72601	4.97253	0.0326974	0.00311573	0.145164	0.0498063
chr19	17238708	17238805	7151161	0	-	0.484536	(0.476,0.515]	chr19	722562	23	INTRON	INTRON	NR2F6	ENSG00000160113.6	ENST00000291442.4:ENST00000596878.1	protein_coding	protein_coding	protein_coding	protein_coding	1	37	2	2.47949	3.72601	4.97253	0.0326974	0.00311573	0.145164	0.0498063
chr7	96276395	96276495	3575798	0	-	0.51	(0.476,0.515]	chr7	333065	411	INTRON	INTRON	SLC25A13	ENSG00000004864.14	ENST00000265631.10:ENST00000416240.6:ENST00000472162.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	37	2	2.47949	3.72601	4.97253	0.0326974	0.00311573	0.145164	0.0498063
chr13	113486293	113486392	5652790	0	-	0.575758	(0.57,1]	chr13	538723	17	INTRON	INTRON	DCUN1D2	ENSG00000150401.15	ENST00000478244.6:ENST00000332592.7:ENST00000375403.6:ENST00000438545.6:ENST00000496873.1:ENST00000439909.2:ENST00000465710.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	45	2	3.56369	3.725875	3.88806	4.26536e-4	6.56297e-5	0.0189958	0.0067007
chr19	43590632	43590731	7187463	0	-	0.454545	(0.44,0.476]	chr19	727431	64	UTR3	UTR3:EXON_MRNA:INTRON	IRGQ	ENSG00000167378.10	ENST00000422989.6:ENST00000602269.2:ENST00000601520.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	40	2	2.20949	3.7258000000000004	5.24211	0.0672585	4.87398e-4	0.183051	0.0199652
chr2	70246810	70246910	1152451	0	-	0.47	(0.44,0.476]	chr2	123109	103	INTRON	INTRON	C2orf42:TIA1	ENSG00000115998.8:ENSG00000116001.17	ENST00000470096.1:ENST00000415783.6:ENST00000433529.7:ENST00000282574.8:ENST00000445587.5:ENST00000416149.6:ENST00000474809.6:ENST00000477044.6:ENST00000496452.5:ENST00000481650.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	40	2	2.20949	3.7258000000000004	5.24211	0.0672585	4.87398e-4	0.183051	0.0199652
chr3	45708897	45708997	1417238	0	+	0.25	[0,0.28]	chr3	148674	16	INTRON	INTRON	SACM1L	ENSG00000211456.13	ENST00000464524.5:ENST00000455997.5:ENST00000418611.5:ENST00000672477.1:ENST00000463237.5:ENST00000441228.5:ENST00000438671.3:ENST00000389061.10:ENST00000445499.2:ENST00000478586.3:ENST00000672858.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	45	2	2.69187	3.7257550000000004	4.75964	0.0232081	0.0221271	0.123903	0.118148
chr6	35880730	35880830	3088413	0	-	0.25	[0,0.28]	chr6	288860	60	INTRON	INTRON	SRPK1	ENSG00000096063.16	ENST00000373825.7:ENST00000423325.6:ENST00000346162.10:ENST00000361690.7:ENST00000510290.5:ENST00000373821.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	45	2	2.69187	3.7257550000000004	4.75964	0.0232081	0.0221271	0.123903	0.118148
chr7	135597825	135597911	3428733	0	+	0.27907	[0,0.28]	chr7	319697	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NUP205	ENSG00000155561.15	ENST00000285968.11:ENST00000462316.5:ENST00000607647.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	45	2	2.69187	3.7257550000000004	4.75964	0.0232081	0.0221271	0.123903	0.118148
chr7	149617003	149617103	3672546	0	-	0.58	(0.57,1]	chr7	340834	530	INTRON	INTRON	ZNF767P	ENSG00000133624.14	ENST00000463567.5:ENST00000472212.5:ENST00000684939.1:ENST00000690388.1:ENST00000486492.5:ENST00000481762.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	2	45	2	3.69986	3.7257550000000004	3.75165	1.9698e-4	1.54884e-4	0.0122531	0.0113252
chr19	1357493	1357593	6994724	0	+	0.4	(0.378,0.408]	chr19	693047	5	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	PWWP3A	ENSG00000160953.17	ENST00000590695.2:ENST00000591337.7:ENST00000590866.2:ENST00000591433.6:ENST00000591806.6:ENST00000588810.6:ENST00000652273.1:ENST00000415183.7:ENST00000587460.6:ENST00000627377.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	53	2	1.81685	3.72574	5.63463	0.0597868	3.59226e-4	0.189982	0.0175484
chr10	48313661	48313760	4431058	0	+	0.353535	(0.35,0.378]	chr10	408563	50	INTRON	INTRON	MAPK8	ENSG00000107643.17	ENST00000395611.7:ENST00000432379.5:ENST00000374189.6:ENST00000429041.6:ENST00000374179.8:ENST00000426557.5:ENST00000476134.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	42	2	2.78212	3.725705	4.66929	0.0168532	0.00541617	0.103549	0.066545000000000007
chr10	15841699	15841799	4564983	0	-	0.25	[0,0.28]	chr10	421249	1	SS3_PROX	SS3_PROX:INTRON	MINDY3	ENSG00000148481.14	ENST00000477891.1:ENST00000277632.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	45	2	2.5055	3.725555	4.94561	0.0359431	0.0150263	0.152322	0.0994339
chr12	111846412	111846512	5228771	0	+	0.25	[0,0.28]	chr12	495634	31	INTRON	INTRON	MAPKAPK5	ENSG00000089022.14	ENST00000550735.7:ENST00000553053.5:ENST00000546394.1:ENST00000551404.6:ENST00000549875.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	45	2	2.5055	3.725555	4.94561	0.0359431	0.0150263	0.152322	0.0994339
chr15	44572168	44572268	6163808	0	-	0.22	[0,0.28]	chr15	587233	3	SS5_PROX	SS5_PROX:INTRON	SPG11	ENSG00000104133.16	ENST00000684235.1:ENST00000261866.12:ENST00000559511.6:ENST00000682065.1:ENST00000682669.1:ENST00000683496.1:ENST00000682460.1:ENST00000682495.1:ENST00000684038.1:ENST00000683186.1:ENST00000683734.1:ENST00000683753.1:ENST00000535302.6:ENST00000427534.6:ENST00000558138.2:ENST00000559347.1:ENST00000561268.5:ENST00000559933.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	45	2	2.5055	3.725555	4.94561	0.0359431	0.0150263	0.152322	0.0994339
chr17	62032473	62032563	6810550	0	-	0.277778	[0,0.28]	chr17	672934	1	INTRON	INTRON	MED13	ENSG00000108510.10	ENST00000397786.7:ENST00000578132.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	45	2	2.5055	3.725555	4.94561	0.0359431	0.0150263	0.152322	0.0994339
chr2	28863429	28863528	1088612	0	-	0.242424	[0,0.28]	chr2	116806	16	INTRON	INTRON	TRMT61B	ENSG00000171103.11	ENST00000306108.10:ENST00000439947.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	45	2	2.5055	3.725555	4.94561	0.0359431	0.0150263	0.152322	0.0994339
chr3	20161326	20161426	1640611	0	-	0.26	[0,0.28]	chr3	168331	1	SS3_PROX	SS3_PROX:INTRON	SGO1	ENSG00000129810.15	ENST00000306698.6:ENST00000419233.6:ENST00000263753.8:ENST00000425061.5:ENST00000443724.5:ENST00000421451.5:ENST00000452020.5	protein_coding	protein_coding	protein_coding	protein_coding	1	45	2	2.5055	3.725555	4.94561	0.0359431	0.0150263	0.152322	0.0994339
chr1	111646854	111646953	185386	0	+	0.313131	(0.28,0.32]	chr1	20514	189	INTRON	INTRON	RAP1A	ENSG00000116473.15	ENST00000356415.5:ENST00000687939.1:ENST00000369709.4:ENST00000494982.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	43	2	2.29724	3.72541	5.15358	0.0554156	0.0052282	0.18407	0.0633615
chr14	51247620	51247720	5716352	0	+	0.4	(0.378,0.408]	chr14	542889	4	SS5_PROX	SS5_PROX:INTRON	TMX1	ENSG00000139921.13	ENST00000457354.7:ENST00000556683.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	37	2	2.78705	3.725215	4.66338	0.0135539	0.0103469	0.101363	0.0850389
chr2	171037465	171037565	1262850	0	-	0.38	(0.378,0.408]	chr2	133843	87	INTRON	INTRON	TLK1	ENSG00000198586.14	ENST00000431350.7:ENST00000360843.7:ENST00000359766.7:ENST00000521943.5:ENST00000434911.6:ENST00000409443.6:ENST00000413010.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	37	2	2.78705	3.725215	4.66338	0.0135539	0.0103469	0.101363	0.0850389
chr20	58669453	58669553	7290364	0	+	0.39	(0.378,0.408]	chr20	741738	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	STX16	ENSG00000124222.22	ENST00000361830.7:ENST00000355957.9:ENST00000312283.12:ENST00000371141.8:ENST00000359617.8:ENST00000460655.5:ENST00000476384.5:ENST00000483434.5:ENST00000496117.5:ENST00000490700.5:ENST00000371132.8:ENST00000496003.5:ENST00000467096.5:ENST00000358029.8:ENST00000464640.5:ENST00000493301.5:ENST00000468590.1:ENST00000438253.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	37	2	2.78705	3.725215	4.66338	0.0135539	0.0103469	0.101363	0.0850389
chr6	150982641	150982741	2999051	0	+	0.4	(0.378,0.408]	chr6	280593	102	INTRON	INTRON	MTHFD1L	ENSG00000120254.16	ENST00000611279.4:ENST00000367321.8:ENST00000618312.4:ENST00000478643.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	37	2	2.78705	3.725215	4.66338	0.0135539	0.0103469	0.101363	0.0850389
chr7	75362588	75362684	3337688	0	+	0.395833	(0.378,0.408]	chr7	310729	1	INTRON	INTRON	STAG3L1	ENSG00000205583.14	ENST00000619870.4:ENST00000687422.1:ENST00000684904.1:ENST00000456374.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	1	37	2	2.78705	3.725215	4.66338	0.0135539	0.0103469	0.101363	0.0850389
chr7	127744495	127744595	3403335	0	+	0.38	(0.378,0.408]	chr7	318134	227	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000468166.5:ENST00000465900.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	37	2	2.78705	3.725215	4.66338	0.0135539	0.0103469	0.101363	0.0850389
chr1	243229917	243230017	668465	0	-	0.38	(0.378,0.408]	chr1	79325	42	INTRON	INTRON	CEP170	ENSG00000143702.16	ENST00000366544.5:ENST00000366543.5:ENST00000366542.6:ENST00000522191.5:ENST00000523424.5:ENST00000522522.5:ENST00000522995.1:ENST00000523581.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	37	2	2.71183	3.72511	4.73839	0.0170789	0.00837252	0.110899	0.0774402
chr1	28051316	28051416	408633	0	-	0.3	(0.28,0.32]	chr1	49215	25	INTRON	INTRON	EYA3	ENSG00000158161.16	ENST00000373871.8:ENST00000540618.5:ENST00000436342.6:ENST00000373864.5:ENST00000373863.3:ENST00000471498.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	42	2	2.86113	3.72494	4.58875	0.0230574	0.0122675	0.118056	0.0969406
chr10	68727476	68727576	4442328	0	+	0.3	(0.28,0.32]	chr10	409595	45	INTRON	INTRON	CCAR1	ENSG00000060339.14	ENST00000536391.5:ENST00000630771.2:ENST00000538031.5:ENST00000543719.5:ENST00000541012.5:ENST00000265872.11:ENST00000539539.5:ENST00000543229.5:ENST00000536012.5:ENST00000543225.5:ENST00000494903.2:ENST00000540210.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	42	2	2.86113	3.72494	4.58875	0.0230574	0.0122675	0.118056	0.0969406
chr13	95156414	95156513	5638405	0	-	0.30303	(0.28,0.32]	chr13	537060	76	INTRON	INTRON	ABCC4	ENSG00000125257.16	ENST00000645237.2:ENST00000643051.1:ENST00000643842.1:ENST00000646439.1:ENST00000643816.1:ENST00000536256.3:ENST00000643556.1:ENST00000629385.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	42	2	2.86113	3.72494	4.58875	0.0230574	0.0122675	0.118056	0.0969406
chr15	27211559	27211659	5984559	0	+	0.31	(0.28,0.32]	chr15	569164	1844	INTRON	INTRON	GABRG3	ENSG00000182256.13	ENST00000615808.5:ENST00000555083.5	protein_coding	protein_coding	protein_coding	protein_coding	1	42	2	2.86113	3.72494	4.58875	0.0230574	0.0122675	0.118056	0.0969406
chr5	138020377	138020477	2730677	0	-	0.3	(0.28,0.32]	chr5	257009	4	SS3_PROX	SS3_PROX:INTRON	FAM13B	ENSG00000031003.11	ENST00000689681.1:ENST00000033079.7:ENST00000425075.6:ENST00000420893.6:ENST00000514310.5:ENST00000502471.5:ENST00000509596.5:ENST00000508403.5:ENST00000505961.1	protein_coding	protein_coding	protein_coding	protein_coding	1	42	2	2.86113	3.72494	4.58875	0.0230574	0.0122675	0.118056	0.0969406
chr12	50413447	50413545	5136459	0	+	0.316327	(0.28,0.32]	chr12	484358	6	INTRON	INTRON	LARP4	ENSG00000161813.23	ENST00000550522.5:ENST00000293618.12:ENST00000429001.7:ENST00000398473.7:ENST00000548174.5:ENST00000548697.5:ENST00000548993.5:ENST00000522085.5:ENST00000518444.5:ENST00000551886.5:ENST00000523389.5:ENST00000518561.5:ENST00000347328.9:ENST00000550260.1:ENST00000517559.5:ENST00000552445.1	protein_coding	protein_coding	protein_coding	protein_coding	2	62	2	2.09794	3.724915	5.35189	0.0340483	8.52844e-4	0.134863	0.0264928
chr17	31893194	31893294	6752834	0	-	0.53	(0.515,0.57]	chr17	663804	4	SS3_PROX	SS3_PROX:INTRON	UTP6	ENSG00000108651.10	ENST00000261708.9:ENST00000583408.5:ENST00000490218.6:ENST00000579878.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	35	2	2.52504	3.7248850000000004	4.92473	0.029342	0.00108255	0.128055	0.0300133
chr9	125124737	125124837	4351792	0	-	0.38	(0.378,0.408]	chr9	399530	583	INTRON	INTRON	SCAI	ENSG00000173611.18	ENST00000336505.11:ENST00000373549.8:ENST00000477186.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	40	2	2.46373	3.7248	4.98587	0.0382831	0.00152268	0.141795	0.0360297
chr16	70115030	70115130	6383438	0	+	0.48	(0.476,0.515]	chr16	613451	1	SS5_PROX	SS5_PROX:INTRON	PDPR	ENSG00000090857.14	ENST00000288050.9:ENST00000561920.5:ENST00000568530.5:ENST00000398122.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	53	2	2.45598	3.7247000000000003	4.99342	0.00945755	0.00139274	0.0817766	0.0341261
chr6	17865297	17865397	3067325	0	-	0.4	(0.378,0.408]	chr6	285088	88	INTRON	INTRON	KIF13A	ENSG00000137177.20	ENST00000378814.9:ENST00000259711.11:ENST00000378826.6:ENST00000378843.6:ENST00000636847.1:ENST00000507576.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	40	2	2.60296	3.724615	4.84627	0.0267851	0.00254319	0.123349	0.0465056
chr5	157811090	157811188	2758168	0	-	0.377551	(0.35,0.378]	chr5	260279	9	INTRON	INTRON	CLINT1	ENSG00000113282.14	ENST00000523094.5:ENST00000411809.7:ENST00000530742.5:ENST00000523908.5	protein_coding	protein_coding	protein_coding	protein_coding	2	52	2	2.59046	3.72458	4.8587	0.00695662	0.00528327	0.0718189	0.0656295
chr10	827188	827283	4541523	0	-	0.6	(0.57,1]	chr10	419228	15	EXON_MRNA	EXON_MRNA:INTRON	LARP4B	ENSG00000107929.16	ENST00000688365.1:ENST00000316157.8:ENST00000690516.1:ENST00000689323.1:ENST00000688042.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	92	2	3.62111	3.72447	3.82783	3.01424e-6	1.50694e-6	0.00111586	8.03394e-4
chr11	87077399	87077499	4843207	0	+	0.29	(0.28,0.32]	chr11	451850	54	INTRON	INTRON	TMEM135	ENSG00000166575.17	ENST00000340353.11:ENST00000529023.5:ENST00000526733.5:ENST00000305494.6:ENST00000532959.5:ENST00000525018.5:ENST00000531800.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	42	2	2.46018	3.72445	4.98872	0.0375904	0.00838468	0.156054	0.0774402
chr15	22867040	22867137	5976812	0	+	0.319588	(0.28,0.32]	chr15	568439	3	UTR3	UTR3:EXON_MRNA	NIPA2	ENSG00000140157.16	ENST00000398014.7:ENST00000674173.1:ENST00000337451.8:ENST00000674289.1:ENST00000674477.1:ENST00000398013.7:ENST00000674215.1:ENST00000674227.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	42	2	2.46018	3.72445	4.98872	0.0375904	0.00838468	0.156054	0.0774402
chr3	17740417	17740515	1630412	0	-	0.306122	(0.28,0.32]	chr3	168278	12	UTR5	UTR5:EXON_MRNA:INTRON	TBC1D5	ENSG00000131374.15	ENST00000253692.11:ENST00000696125.1:ENST00000414318.2:ENST00000429383.8:ENST00000415814.6:ENST00000452492.6:ENST00000412981.5:ENST00000428355.5:ENST00000425944.5:ENST00000430169.5:ENST00000445294.5:ENST00000414349.5:ENST00000443499.6:ENST00000444756.5:ENST00000497531.5:ENST00000446863.5:ENST00000444471.5:ENST00000481396.5:ENST00000423331.6:ENST00000485432.1:ENST00000471679.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	42	2	2.46018	3.72445	4.98872	0.0375904	0.00838468	0.156054	0.0774402
chr8	120472006	120472103	3849192	0	+	0.28866000000000003	(0.28,0.32]	chr8	354558	12	EXON_MRNA	EXON_MRNA:INTRON	MTBP	ENSG00000172167.8	ENST00000305949.6:ENST00000522449.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	42	2	2.46018	3.72445	4.98872	0.0375904	0.00838468	0.156054	0.0774402
chrX	154694019	154694118	7914741	0	-	0.292929	(0.28,0.32]	chrX	806068	134	INTRON	INTRON	GAB3	ENSG00000160219.12	ENST00000496390.5:ENST00000424127.3:ENST00000369575.7:ENST00000369568.8:ENST00000475685.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	42	2	2.46018	3.72445	4.98872	0.0375904	0.00838468	0.156054	0.0774402
chr1	51863217	51863317	455142	0	-	0.45	(0.44,0.476]	chr1	54631	4	INTRON	INTRON	NRDC	ENSG00000078618.23	ENST00000354831.11:ENST00000539524.5:ENST00000352171.12:ENST00000491410.1:ENST00000468722.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	49	2	2.14573	3.724315	5.3029	0.0238593	0.00102616	0.129075	0.029231300000000002
chr1	236233533	236233631	664664	0	-	0.428571	(0.408,0.44]	chr1	78693	3	INTRON	INTRON	ERO1B	ENSG00000086619.15	ENST00000354619.10:ENST00000687487.1	protein_coding	protein_coding	protein_coding	protein_coding	2	50	2	2.69457	3.7242750000000004	4.75398	0.00703931	0.00331036	0.0718189	0.0527031
chr16	70563077	70563176	6385557	0	+	0.484848	(0.476,0.515]	chr16	613969	9	INTRON	INTRON	SF3B3	ENSG00000189091.13	ENST00000302516.10:ENST00000568539.1:ENST00000563739.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	50	2	2.68023	3.72425	4.76827	0.00600704	0.00353671	0.0674604	0.0546236
chr19	53079588	53079686	7210324	0	-	0.336735	(0.32,0.35]	chr19	731876	18	INTRON	INTRON	ZNF160	ENSG00000170949.18	ENST00000599056.5:ENST00000418871.5:ENST00000429604.5:ENST00000683776.1:ENST00000599247.5:ENST00000601982.5:ENST00000355147.9:ENST00000599729.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	65	2	2.2643	3.7242249999999997	5.18415	0.00712852	0.00333629	0.0756118	0.0512081
chr16	18334304	18334399	6454542	0	-	0.378947	(0.378,0.408]	chr16	622015	2	SS5_PROX	SS5_PROX:INTRON	NPIPA8	ENSG00000214940.8	ENST00000525596.5	protein_coding	protein_coding	protein_coding	protein_coding	2	54	2	2.16303	3.72412	5.28521	0.0252473	4.52877e-4	0.12011	0.0192381
chr6	157432840	157432940	3012059	0	+	0.42	(0.408,0.44]	chr6	281268	502	INTRON	INTRON	ZDHHC14	ENSG00000175048.17	ENST00000414563.6:ENST00000359775.10	protein_coding	protein_coding	protein_coding	protein_coding	3	64	2	2.04611	3.724095	5.40208	0.016628	2.37882e-4	0.102621	0.0136195
chr2	222917076	222917173	1021780	0	+	0.474227	(0.44,0.476]	chr2	109297	7	EXON_MRNA	EXON_MRNA:INTRON	ACSL3	ENSG00000123983.15	ENST00000392066.7:ENST00000407441.5:ENST00000680251.1:ENST00000679541.1:ENST00000681906.1:ENST00000679545.1:ENST00000679932.1:ENST00000680100.1:ENST00000680475.1:ENST00000680525.1:ENST00000680420.1:ENST00000681326.1:ENST00000681292.1:ENST00000681017.1:ENST00000680382.1:ENST00000535678.2:ENST00000680395.1:ENST00000680736.1:ENST00000680147.1:ENST00000357430.8:ENST00000681009.1:ENST00000679514.1:ENST00000681697.1:ENST00000680921.1:ENST00000681383.1:ENST00000679558.1:ENST00000680684.1:ENST00000680424.1:ENST00000540115.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	53	2	2.38519	3.7240349999999998	5.06288	0.012193	0.00102416	0.0910127	0.0294041
chr14	23034074	23034174	5842446	0	-	0.42	(0.408,0.44]	chr14	555488	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PSMB5	ENSG00000100804.19	ENST00000555895.5:ENST00000361611.11:ENST00000460922.2:ENST00000493471.2:ENST00000425762.2:ENST00000334454.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	84	2	3.46104	3.72392	3.9868	0.00105552	1.3698e-4	0.0299229	0.0106749
chr16	12148629	12148729	6293051	0	+	0.38	(0.378,0.408]	chr16	602439	130	INTRON	INTRON	SNX29	ENSG00000048471.14	ENST00000566228.6:ENST00000564791.5	protein_coding	protein_coding	protein_coding	protein_coding	3	63	2	2.57022	3.72392	4.87762	0.00553849	0.00179058	0.0648867	0.0392749
chr5	32144579	32144679	2597218	0	-	0.34	(0.32,0.35]	chr5	246744	3	INTRON	INTRON	GOLPH3	ENSG00000113384.14	ENST00000265070.7:ENST00000503610.5:ENST00000512668.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	40	2	2.90786	3.72387	4.53988	0.0202178	0.00993008	0.109913	0.0877296
chr7	92345566	92345664	3353798	0	+	0.346939	(0.32,0.35]	chr7	312530	1	INTRON	INTRON	ANKIB1	ENSG00000001629.10	ENST00000265742.8:ENST00000413588.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	65	2	1.78201	3.7238350000000002	5.66566	0.0365003	6.06695e-4	0.153759	0.0226059
chr18	1279530	1279630	6940973	0	-	0.33	(0.32,0.35]	chr18	686573	3	INTRON	INTRON	LINC00470	ENSG00000132204.14	ENST00000657423.1:ENST00000657618.1:ENST00000584090.5:ENST00000660947.1:ENST00000669242.1:ENST00000660475.1:ENST00000653775.1:ENST00000661931.1:ENST00000412816.7:ENST00000577867.5:ENST00000584492.5:ENST00000667416.1:ENST00000661852.1:ENST00000657919.1:ENST00000661646.1:ENST00000667776.1:ENST00000654559.1:ENST00000661233.1:ENST00000653213.1:ENST00000659094.1:ENST00000660964.1:ENST00000577403.6:ENST00000660358.1:ENST00000669153.1:ENST00000657121.1:ENST00000655957.1:ENST00000659289.1:ENST00000665133.1:ENST00000671558.1:ENST00000666542.1:ENST00000663512.1:ENST00000582862.6:ENST00000578835.5:ENST00000669312.1:ENST00000581430.5:ENST00000581212.1	lncRNA	lncRNA	lncRNA	lncRNA	3	124	2	3.36317	3.72378	4.08439	1.69213e-4	1.31573e-4	0.0112853	0.0104376
chrX	130105126	130105226	7887538	0	-	0.49	(0.476,0.515]	chrX	803067	232	INTRON	INTRON	ELF4	ENSG00000102034.18	ENST00000308167.10:ENST00000335997.11:ENST00000434609.1	protein_coding	protein_coding	protein_coding	protein_coding	2	50	2	1.99341	3.723655	5.4539	0.037389	5.16081e-4	0.155878	0.0208667
chr13	95140396	95140496	5638244	0	-	0.35	(0.32,0.35]	chr13	537056	240	INTRON	INTRON	ABCC4	ENSG00000125257.16	ENST00000645237.2:ENST00000643051.1:ENST00000643842.1:ENST00000646439.1:ENST00000644880.1:ENST00000643816.1:ENST00000536256.3:ENST00000643556.1:ENST00000629385.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	41	2	3.07975	3.72365	4.36755	0.0300552	0.00554235	0.129138	0.0674105
chr17	29420387	29420487	6585936	0	+	0.34	(0.32,0.35]	chr17	640377	164	INTRON	INTRON	TAOK1	ENSG00000160551.12	ENST00000261716.8:ENST00000583121.5:ENST00000587277.1:ENST00000536202.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	41	2	3.07975	3.72365	4.36755	0.0300552	0.00554235	0.129138	0.0674105
chrX	71367613	71367713	7678216	0	+	0.53	(0.515,0.57]	chrX	786130	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TAF1	ENSG00000147133.17	ENST00000683202.1:ENST00000373790.9:ENST00000483365.2:ENST00000683352.1:ENST00000423759.6:ENST00000683782.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	49	2	2.67733	3.723585	4.76984	0.00366712	0.00198034	0.0535094	0.0411469
chr4	126645481	126645581	2237164	0	-	0.33	(0.32,0.35]	chr4	219023	1800	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	3	125	2	3.6965	3.723505	3.75051	5.8762e-4	2.66608e-5	0.0224695	0.00407562
chr7	76593502	76593602	3340803	0	+	0.56	(0.515,0.57]	chr7	311170	416	INTRON	INTRON	ENSG00000205485	ENSG00000205485.13	ENST00000418663.5:ENST00000450661.1:ENST00000423084.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	3	53	2	2.17039	3.7234499999999997	5.27651	0.00900252	5.11033e-4	0.0851009	0.020816
chr10	17232592	17232691	4398606	0	+	0.333333	(0.32,0.35]	chr10	406074	15	INTRON	INTRON	VIM	ENSG00000026025.16	ENST00000544301.7:ENST00000224237.9:ENST00000487938.5:ENST00000469543.5:ENST00000421459.2:ENST00000637053.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	40	2	2.48693	3.72332	4.95971	0.0338094	0.00663522	0.146709	0.0703181
chr10	119057776	119057855	4704680	0	-	0.341772	(0.32,0.35]	chr10	433957	4	SS5_PROX	SS5_PROX:INTRON	EIF3A	ENSG00000107581.13	ENST00000369144.8:ENST00000541549.2:ENST00000462527.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	40	2	2.48693	3.72332	4.95971	0.0338094	0.00663522	0.146709	0.0703181
chr12	9678792	9678892	5075633	0	+	0.34	(0.32,0.35]	chr12	479886	42	INTRON	INTRON	CLEC2D	ENSG00000069493.15	ENST00000536355.5:ENST00000487752.1:ENST00000290855.11:ENST00000325960.11:ENST00000261340.11:ENST00000444971.6:ENST00000492359.6:ENST00000479877.5:ENST00000261339.10:ENST00000543300.5:ENST00000545918.5:ENST00000466035.6:ENST00000476198.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	40	2	2.48693	3.72332	4.95971	0.0338094	0.00663522	0.146709	0.0703181
chr17	7486954	7487054	6553336	0	+	0.35	(0.32,0.35]	chr17	636529	17	INTRON	INTRON	POLR2A	ENSG00000181222.19	ENST00000617998.6:ENST00000674977.2:ENST00000572844.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	40	2	2.48693	3.72332	4.95971	0.0338094	0.00663522	0.146709	0.0703181
chr16	23841395	23841495	6323812	0	+	0.28	[0,0.28]	chr16	605693	36	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000498058.1:ENST00000645517.1:ENST00000498739.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	153	2	3.5826	3.723305	3.86401	6.37628e-4	9.06684e-5	0.0231685	0.00796627
chr1	24746025	24746125	46067	0	+	0.59	(0.57,1]	chr1	5763	4	SS5_PROX	SS5_PROX:INTRON	CLIC4	ENSG00000169504.15	ENST00000488683.1:ENST00000497755.1:ENST00000489758.1:ENST00000374379.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	38	2	2.24434	3.7232449999999995	5.20215	0.00677343	8.28896e-5	0.074225	0.00812487
chr11	63750698	63750791	4800612	0	+	0.494624	(0.476,0.515]	chr11	444964	1	INTRON	INTRON	RTN3	ENSG00000133318.14	ENST00000341307.6:ENST00000356000.7:ENST00000542238.5:ENST00000339997.8:ENST00000540798.5:ENST00000537981.5:ENST00000377819.10:ENST00000536011.5:ENST00000354497.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	54	2	3.00507	3.723175	4.44128	0.0151924	8.38796e-4	0.0994339	0.0263691
chr14	58252937	58253035	5730986	0	+	0.377551	(0.35,0.378]	chr14	544091	3	INTRON	INTRON	PSMA3	ENSG00000100567.13	ENST00000216455.9:ENST00000554812.5:ENST00000553665.5:ENST00000557087.5:ENST00000555931.5:ENST00000412908.6:ENST00000555743.1:ENST00000557508.5:ENST00000556321.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	117	2	3.68524	3.7230999999999996	3.76096	4.8203e-4	2.39681e-5	0.0203411	0.00383194
chr19	58390977	58391077	7107618	0	+	0.4	(0.378,0.408]	chr19	713447	21	INTRON	INTRON	RPS5	ENSG00000083845.9	ENST00000601521.5:ENST00000596314.5:ENST00000598098.5:ENST00000196551.8:ENST00000598495.5:ENST00000598807.1:ENST00000596046.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	63	2	1.59317	3.72302	5.85287	0.0603812	1.39037e-4	0.19151	0.0107072
chr3	138495671	138495766	1828629	0	-	0.442105	(0.44,0.476]	chr3	183802	2	INTRON	INTRON	CEP70	ENSG00000114107.9	ENST00000264982.8:ENST00000489254.5:ENST00000484888.5:ENST00000474781.5	protein_coding	protein_coding	protein_coding	protein_coding	3	63	2	1.94723	3.723005	5.49878	0.0227424	1.52058e-4	0.117618	0.0106137
chr9	19082672	19082772	4236394	0	-	0.46	(0.44,0.476]	chr9	389395	4	SS5_PROX	SS5_PROX:INTRON	HAUS6	ENSG00000147874.11	ENST00000380502.8:ENST00000380496.5	protein_coding	protein_coding	protein_coding	protein_coding	1	43	2	3.22192	3.722925	4.22393	0.0162322	0.00360821	0.109464	0.0533855
chr1	52065608	52065708	101350	0	+	0.39	(0.378,0.408]	chr1	13434	2	SS5_PROX	SS5_PROX:INTRON	BTF3L4	ENSG00000134717.18	ENST00000477828.6:ENST00000489308.6:ENST00000526132.5:ENST00000313334.13:ENST00000472944.6:ENST00000484036.1:ENST00000533836.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	55	2	2.39444	3.7226749999999997	5.05091	0.0122858	0.00118558	0.091087	0.031662
chr1	246149575	246149674	677128	0	-	0.333333	(0.32,0.35]	chr1	79721	533	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000391836.3:ENST00000453676.5:ENST00000462422.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	41	2	2.31405	3.72264	5.13123	0.0517107	0.00394704	0.176696	0.0548259
chr1	167977012	167977112	248896	0	+	0.46	(0.44,0.476]	chr1	29564	16	INTRON	INTRON	DCAF6	ENSG00000143164.16	ENST00000450548.5:ENST00000470919.5:ENST00000432587.6:ENST00000367843.7:ENST00000470721.5:ENST00000367840.4:ENST00000312263.10:ENST00000455334.5:ENST00000491067.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	80	2	3.65135	3.72261	3.79387	6.34922e-4	2.19099e-4	0.023163	0.0129737
chr15	94866252	94866352	6105291	0	+	0.3	(0.28,0.32]	chr15	581666	90	INTRON	INTRON	ENSG00000277654	ENSG00000277654.6	ENST00000618611.4:ENST00000648065.1:ENST00000618377.1:ENST00000621842.4:ENST00000615751.4:ENST00000614581.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	2	56	2	2.24061	3.722605	5.2046	0.0194267	0.00448664	0.119831	0.0593175
chr16	16134608	16134708	6309642	0	+	0.44	(0.408,0.44]	chr16	603692	1	SS5_PROX	SS5_PROX:INTRON	ABCC1	ENSG00000103222.20	ENST00000678422.1:ENST00000677164.1:ENST00000399408.7:ENST00000572882.3:ENST00000399410.8:ENST00000676806.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	39	2	2.51492	3.7225800000000002	4.93024	0.0329839	0.00170369	0.133816	0.0381936
chr1	227294505	227294605	651481	0	-	0.47	(0.44,0.476]	chr1	77110	294	INTRON	INTRON	CDC42BPA	ENSG00000143776.20	ENST00000366766.8:ENST00000366769.7:ENST00000334218.9:ENST00000366767.7:ENST00000366764.8:ENST00000478573.6:ENST00000682551.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	39	2	2.38219	3.7225349999999997	5.06288	0.045456	0.00102416	0.149888	0.0294041
chr2	86457271	86457371	823100	0	+	0.45	(0.44,0.476]	chr2	91934	2	SS5_PROX	SS5_PROX:INTRON	KDM3A	ENSG00000115548.17	ENST00000409556.5:ENST00000312912.10:ENST00000441719.5:ENST00000409064.5:ENST00000488971.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	39	2	2.38219	3.7225349999999997	5.06288	0.045456	0.00102416	0.149888	0.0294041
chr1	161322517	161322616	234616	0	+	0.373737	(0.35,0.378]	chr1	28257	73	INTRON	INTRON	SDHC	ENSG00000143252.16	ENST00000367975.7:ENST00000342751.8:ENST00000515731.1:ENST00000432287.6:ENST00000513009.5:ENST00000392169.6:ENST00000504963.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	51	2	2.34278	3.7225200000000003	5.10226	0.0129593	0.00327038	0.0991015	0.0508595
chr3	43502022	43502122	1674234	0	-	0.34	(0.32,0.35]	chr3	170972	689	INTRON	INTRON	ANO10	ENSG00000160746.13	ENST00000292246.8:ENST00000350459.8:ENST00000396091.7:ENST00000414522.6:ENST00000451430.6:ENST00000448045.1	protein_coding	protein_coding	protein_coding	protein_coding	1	43	2	2.4458	3.72251	4.99922	0.0425977	0.00223907	0.148082	0.0435144
chr5	1628603	1628696	2566248	0	-	0.322581	(0.32,0.35]	chr5	245815	2	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	PDCD6P1	ENSG00000188002.11	ENST00000507841.5:ENST00000512335.5:ENST00000692393.1:ENST00000507290.5:ENST00000690809.1:ENST00000688433.1:ENST00000507505.5:ENST00000691115.1:ENST00000502273.7:ENST00000522848.5:ENST00000689007.1:ENST00000690916.1:ENST00000686018.1:ENST00000687772.1:ENST00000693722.1:ENST00000690945.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	1	43	2	2.4458	3.72251	4.99922	0.0425977	0.00223907	0.148082	0.0435144
chr19	58272116	58272215	7217694	0	-	0.414141	(0.408,0.44]	chr19	733257	121	INTRON	INTRON	ZNF8-DT	ENSG00000268516.3	ENST00000597230.3	lncRNA	lncRNA	lncRNA	lncRNA	1	39	2	2.58624	3.72248	4.85872	0.0273686	0.00221911	0.123904	0.0435144
chr2	38308082	38308182	1098637	0	-	0.37	(0.35,0.378]	chr2	117813	74	INTRON	INTRON	ATL2	ENSG00000119787.14	ENST00000378954.9:ENST00000406122.5:ENST00000405384.6:ENST00000402054.5:ENST00000419554.6:ENST00000651368.1:ENST00000452935.6:ENST00000629272.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	51	2	2.2877	3.722465	5.15723	0.0155765	0.00272706	0.109411	0.0467523
chr11	108205020	108205120	5035010	0	-	0.34	(0.32,0.35]	chr11	474461	72	INTRON	INTRON	NPAT	ENSG00000149308.17	ENST00000278612.9:ENST00000610253.5:ENST00000531384.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	43	2	2.51061	3.7224299999999997	4.93425	0.0364463	0.00281048	0.138959	0.0488779
chr1	226175195	226175295	646943	0	-	0.37	(0.35,0.378]	chr1	76667	88	INTRON	INTRON	ACBD3	ENSG00000182827.9	ENST00000366812.6	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	2.72498	3.7222549999999996	4.71953	0.0168499	0.0103314	0.11068	0.0850389
chr2	23801488	23801588	1079672	0	-	0.36	(0.35,0.378]	chr2	115236	11	INTRON	INTRON	ATAD2B	ENSG00000119778.15	ENST00000238789.10:ENST00000381024.4:ENST00000474583.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	38	2	2.72498	3.7222549999999996	4.71953	0.0168499	0.0103314	0.11068	0.0850389
chr3	170116531	170116628	1861166	0	-	0.360825	(0.35,0.378]	chr3	186608	27	INTRON	INTRON	PHC3	ENSG00000173889.16	ENST00000495893.7:ENST00000494943.5:ENST00000467570.5	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	2.72498	3.7222549999999996	4.71953	0.0168499	0.0103314	0.11068	0.0850389
chr5	43132898	43132998	2349147	0	+	0.37	(0.35,0.378]	chr5	226661	80	INTRON	INTRON	ZNF131	ENSG00000172262.12	ENST00000515326.5:ENST00000682664.1:ENST00000510026.5:ENST00000504359.1:ENST00000509156.5:ENST00000508259.5:ENST00000507218.5:ENST00000306938.8:ENST00000505606.6:ENST00000509634.5:ENST00000509341.5:ENST00000511736.5:ENST00000509931.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	38	2	2.72498	3.7222549999999996	4.71953	0.0168499	0.0103314	0.11068	0.0850389
chr2	15339833	15339933	1070916	0	-	0.38	(0.378,0.408]	chr2	114279	87	INTRON	INTRON	NBAS	ENSG00000151779.13	ENST00000281513.10:ENST00000442506.5	protein_coding	protein_coding	protein_coding	protein_coding	4	68	2	1.89052	3.7222	5.55388	0.0148147	5.01023e-4	0.106702	0.0206993
chr1	147161425	147161518	542251	0	-	0.376344	(0.35,0.378]	chr1	63584	2	SS5_PROX	SS5_PROX:INTRON	PRKAB2	ENSG00000131791.8	ENST00000254101.4:ENST00000496858.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	39	2	3.05136	3.722195	4.39303	0.0237246	0.00578894	0.118716	0.0684334
chr14	63501730	63501830	5907488	0	-	0.36	(0.35,0.378]	chr14	561132	475	INTRON	INTRON	PPP2R5E	ENSG00000154001.14	ENST00000337537.8:ENST00000422769.6:ENST00000555899.1:ENST00000556484.5:ENST00000553266.5:ENST00000556878.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	39	2	3.05136	3.722195	4.39303	0.0237246	0.00578894	0.118716	0.0684334
chr5	80416549	80416648	2399614	0	+	0.373737	(0.35,0.378]	chr5	231782	44	INTRON	INTRON	ZFYVE16	ENSG00000039319.17	ENST00000338008.9:ENST00000510158.5:ENST00000512558.5:ENST00000505560.5:ENST00000509562.2:ENST00000510995.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	39	2	3.05136	3.722195	4.39303	0.0237246	0.00578894	0.118716	0.0684334
chr19	18498926	18499026	7152783	0	-	0.48	(0.476,0.515]	chr19	722886	231	INTRON	INTRON	ELL	ENSG00000105656.13	ENST00000262809.9:ENST00000594635.6:ENST00000596915.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	49	2	2.53671	3.7221599999999997	4.90761	0.00624027	0.00386428	0.0718843	0.0542786
chr6	85618218	85618317	3151195	0	-	0.484848	(0.476,0.515]	chr6	293867	25	INTRON	INTRON	ENSG00000271793:SYNCRIP	ENSG00000271793.2:ENSG00000135316.19	ENST00000682083.1:ENST00000683074.1:ENST00000681965.1:ENST00000682504.1:ENST00000682106.1:ENST00000683364.1:ENST00000683436.1:ENST00000684220.1:ENST00000683909.1:ENST00000684462.1:ENST00000616122.5:ENST00000678528.1:ENST00000676637.1:ENST00000677771.1:ENST00000355238.11:ENST00000678878.1:ENST00000677481.1:ENST00000677646.1:ENST00000676630.1:ENST00000678618.1:ENST00000676542.1:ENST00000677059.1:ENST00000444272.2:ENST00000678899.1:ENST00000369622.8:ENST00000678355.1:ENST00000676688.1:ENST00000677514.1:ENST00000678816.1:ENST00000678930.1:ENST00000678589.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	49	2	2.53671	3.7221599999999997	4.90761	0.00624027	0.00386428	0.0718843	0.0542786
chr4	145560	145659	1905856	0	+	0.434343	(0.408,0.44]	chr4	191032	137	INTRON	INTRON	ZNF718	ENSG00000250312.8	ENST00000642529.1:ENST00000510175.6:ENST00000609714.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	49	2	2.55103	3.72215	4.89327	0.00587353	0.00458906	0.0690758	0.0595107
chr21	28980019	28980119	7436564	0	-	0.45	(0.44,0.476]	chr21	758418	82	INTRON	INTRON	LTN1	ENSG00000198862.14	ENST00000614971.4:ENST00000389194.7:ENST00000361371.10:ENST00000389195.7:ENST00000483326.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	39	2	2.74063	3.7220899999999997	4.70355	0.0176095	0.00383786	0.105143	0.0562562
chr5	140418240	140418339	2502990	0	+	0.454545	(0.44,0.476]	chr5	239166	156	INTRON	INTRON	ANKHD1	ENSG00000131503.21	ENST00000297183.10:ENST00000616482.4:ENST00000360839.7:ENST00000421134.5:ENST00000394723.7:ENST00000511151.5:ENST00000394722.7	protein_coding	protein_coding	protein_coding	protein_coding	1	39	2	2.74063	3.7220899999999997	4.70355	0.0176095	0.00383786	0.105143	0.0562562
chr1	171486135	171486235	253220	0	+	0.52	(0.515,0.57]	chr1	30095	4	SS5_PROX	SS5_PROX:INTRON	PRRC2C	ENSG00000117523.18	ENST00000647382.2:ENST00000367742.7:ENST00000476522.5:ENST00000338920.8:ENST00000467601.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	45	2	2.68132	3.7218799999999996	4.76244	0.00362147	0.00324198	0.0533855	0.0524329
chr5	140495222	140495322	2503783	0	+	0.43	(0.408,0.44]	chr5	239246	78	INTRON	INTRON	ANKHD1	ENSG00000131503.21	ENST00000297183.10:ENST00000360839.7:ENST00000421134.5:ENST00000246149.10:ENST00000412116.5:ENST00000506755.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	49	2	2.14732	3.7217200000000004	5.29612	0.0237354	0.00113523	0.129075	0.0307488
chr6	4909539	4909639	2792196	0	+	0.41	(0.408,0.44]	chr6	263614	168	INTRON	INTRON	CDYL	ENSG00000153046.18	ENST00000328908.9:ENST00000440139.5:ENST00000397588.8:ENST00000472453.5:ENST00000449732.6:ENST00000343762.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	49	2	2.14732	3.7217200000000004	5.29612	0.0237354	0.00113523	0.129075	0.0307488
chr1	186351058	186351143	604164	0	-	0.294118	(0.28,0.32]	chr1	72099	3	SS5_PROX	SS5_PROX:INTRON	TPR	ENSG00000047410.14	ENST00000367478.9	protein_coding	protein_coding	protein_coding	protein_coding	2	56	2	2.1895	3.7216899999999997	5.25388	0.0227063	0.00385849	0.124921	0.0542786
chr3	10310668	10310767	1613210	0	-	0.323232	(0.32,0.35]	chr3	166596	46	INTRON	INTRON	SEC13	ENSG00000157020.18	ENST00000350697.8:ENST00000337354.8:ENST00000397109.7:ENST00000479868.6:ENST00000397117.5:ENST00000383801.6:ENST00000477547.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	56	2	2.7493	3.72155	4.6938	0.0137794	0.00296357	0.0949306	0.0500135
chr7	121117746	121117846	3394936	0	+	0.32	(0.28,0.32]	chr7	317723	173	INTRON	INTRON	CPED1	ENSG00000106034.18	ENST00000310396.10:ENST00000428526.5:ENST00000450913.6:ENST00000423795.5:ENST00000443817.1	protein_coding	protein_coding	protein_coding	protein_coding	2	59	2	2.70831	3.721525	4.73474	0.0162835	0.00378444	0.101453	0.0562562
chr1	109575528	109575628	180432	0	+	0.48	(0.476,0.515]	chr1	19802	11	INTRON	INTRON	GNAI3	ENSG00000065135.12	ENST00000369851.7	protein_coding	protein_coding	protein_coding	protein_coding	1	39	2	2.3223	3.7215100000000003	5.12072	0.0519312	8.42139e-4	0.159306	0.0263691
chr17	63832460	63832556	6812151	0	-	0.479167	(0.476,0.515]	chr17	673286	5	UTR3	UTR3:EXON_MRNA	SMARCD2	ENSG00000108604.17	ENST00000448276.7:ENST00000323347.14	protein_coding	protein_coding	protein_coding	protein_coding	1	39	2	2.3223	3.7215100000000003	5.12072	0.0519312	8.42139e-4	0.159306	0.0263691
chr1	92732202	92732302	507639	0	-	0.4	(0.378,0.408]	chr1	59878	271	INTRON	INTRON	EVI5	ENSG00000067208.16	ENST00000370331.5:ENST00000540033.2:ENST00000684568.2:ENST00000474806.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	37	2	2.85854	3.721405	4.58427	0.0128325	0.0107837	0.0926667	0.0920575
chr1	230110629	230110729	334513	0	+	0.39	(0.378,0.408]	chr1	38930	187	INTRON	INTRON	GALNT2	ENSG00000143641.10	ENST00000494106.1:ENST00000366672.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	37	2	2.85854	3.721405	4.58427	0.0128325	0.0107837	0.0926667	0.0920575
chr11	68516744	68516842	4817895	0	+	0.387755	(0.378,0.408]	chr11	448919	12	INTRON	INTRON	PPP6R3	ENSG00000110075.15	ENST00000530427.5:ENST00000528635.5:ENST00000529907.5:ENST00000533127.5:ENST00000534534.5:ENST00000529344.5:ENST00000524845.5:ENST00000393800.7:ENST00000265637.8:ENST00000524904.5:ENST00000393801.7:ENST00000265636.9:ENST00000529710.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	37	2	2.85854	3.721405	4.58427	0.0128325	0.0107837	0.0926667	0.0920575
chr15	65784136	65784235	6209715	0	-	0.383838	(0.378,0.408]	chr15	592617	169	INTRON	INTRON	DENND4A	ENSG00000174485.16	ENST00000443035.8:ENST00000431932.6:ENST00000564674.5:ENST00000568515.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	37	2	2.85854	3.721405	4.58427	0.0128325	0.0107837	0.0926667	0.0920575
chr18	73256912	73257011	6988546	0	-	0.40404	(0.378,0.408]	chr18	691717	6	INTRON	INTRON	LINC02864	ENSG00000263711.6	ENST00000584544.5:ENST00000581011.5:ENST00000581862.6:ENST00000669547.1:ENST00000661525.1:ENST00000583405.5:ENST00000582571.2:ENST00000667943.1:ENST00000654686.1:ENST00000584671.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	1	37	2	2.85854	3.721405	4.58427	0.0128325	0.0107837	0.0926667	0.0920575
chr20	3152040	3152138	7306465	0	-	0.408163	(0.378,0.408]	chr20	743949	4	INTRON	INTRON	FASTKD5	ENSG00000215251.5	ENST00000380266.4:ENST00000692371.1:ENST00000687419.1:ENST00000688674.1	protein_coding	protein_coding	protein_coding	protein_coding	1	37	2	2.85854	3.721405	4.58427	0.0128325	0.0107837	0.0926667	0.0920575
chr5	95756360	95756459	2431498	0	+	0.393939	(0.378,0.408]	chr5	233666	2	INTRON	INTRON	RHOBTB3	ENSG00000164292.13	ENST00000379982.8:ENST00000502541.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	37	2	2.85854	3.721405	4.58427	0.0128325	0.0107837	0.0926667	0.0920575
chr7	105001515	105001615	3600966	0	-	0.33	(0.32,0.35]	chr7	336035	177	INTRON	INTRON	LINC01004	ENSG00000228393.5	ENST00000450686.1:ENST00000655204.2:ENST00000445184.1	lncRNA	lncRNA	lncRNA	lncRNA	2	57	2	2.82385	3.7213700000000003	4.61889	0.0166646	0.00217392	0.102621	0.043502
chr22	30027589	30027688	7498999	0	+	0.353535	(0.35,0.378]	chr22	765140	19	UTR3	UTR3:EXON_MRNA	MTMR3	ENSG00000100330.16	ENST00000333027.7:ENST00000401950.7:ENST00000323630.9	protein_coding	protein_coding	protein_coding	protein_coding	1	39	2	2.39746	3.7212899999999998	5.04512	0.041314	0.00393262	0.161534	0.0548259
chr4	122893880	122893979	2035583	0	+	0.363636	(0.35,0.378]	chr4	202291	16	UTR3	UTR3:EXON_MRNA	FGF2	ENSG00000138685.17	ENST00000264498.8:ENST00000644866.2:ENST00000608478.1	protein_coding	protein_coding	protein_coding	protein_coding	1	39	2	2.39746	3.7212899999999998	5.04512	0.041314	0.00393262	0.161534	0.0548259
chr3	51542056	51542150	1426087	0	+	0.404255	(0.378,0.408]	chr3	150470	3	SS5_PROX	SS5_PROX:INTRON	RAD54L2	ENSG00000164080.14	ENST00000684192.1:ENST00000409535.6:ENST00000487093.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	54	2	2.21238	3.7212449999999997	5.23011	0.0218124	5.72873e-4	0.11491	0.0217398
chr16	50300018	50300116	6348939	0	+	0.408163	(0.378,0.408]	chr16	609441	6	INTRON	INTRON	ADCY7	ENSG00000121281.13	ENST00000394697.7:ENST00000673801.1:ENST00000566433.6:ENST00000673973.1:ENST00000537579.5:ENST00000254235.7:ENST00000567277.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	37	2	2.63247	3.721075	4.80968	0.0215745	0.00679828	0.123836	0.0711802
chr16	70669026	70669126	6512016	0	-	0.4	(0.378,0.408]	chr16	630830	31	INTRON	INTRON	MTSS2	ENSG00000132613.16	ENST00000338779.11	protein_coding	protein_coding	protein_coding	protein_coding	1	37	2	2.63247	3.721075	4.80968	0.0215745	0.00679828	0.123836	0.0711802
chr6	5199054	5199154	3049460	0	-	0.38	(0.378,0.408]	chr6	283832	117	INTRON	INTRON	LYRM4	ENSG00000214113.11	ENST00000330636.9:ENST00000468929.5:ENST00000464010.5:ENST00000463032.5:ENST00000480566.5:ENST00000500576.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	37	2	2.63247	3.721075	4.80968	0.0215745	0.00679828	0.123836	0.0711802
chr9	130821753	130821853	4214942	0	+	0.43	(0.408,0.44]	chr9	386427	1069	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000393293.4	protein_coding	protein_coding	protein_coding	protein_coding	2	53	2	1.94273	3.721035	5.49934	0.0456237	1.5076e-4	0.149888	0.0106137
chr1	235316319	235316418	663744	0	-	0.474747	(0.44,0.476]	chr1	78552	552	INTRON	INTRON	ARID4B	ENSG00000054267.22	ENST00000349213.7:ENST00000366603.6:ENST00000264183.9:ENST00000421364.5:ENST00000491632.5:ENST00000418304.1:ENST00000466653.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	171	2	3.70928	3.720895	3.73251	2.74071e-5	2.26649e-6	0.00430942	9.45612e-4
chr8	26340273	26340373	3716589	0	+	0.33	(0.32,0.35]	chr8	345394	3	SS5_PROX	SS5_PROX:INTRON	PPP2R2A	ENSG00000221914.11	ENST00000380737.8:ENST00000520329.5:ENST00000518254.5:ENST00000524169.5:ENST00000518397.5:ENST00000522535.5:ENST00000665949.1:ENST00000521095.5:ENST00000660435.1:ENST00000523925.5:ENST00000524099.5:ENST00000315985.7:ENST00000519636.5:ENST00000522482.5:ENST00000521557.5:ENST00000519439.5:ENST00000521484.5:ENST00000523964.5:ENST00000667651.1:ENST00000657943.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	54	2	2.54408	3.72088	4.89768	0.00793135	0.00659077	0.076155	0.0737338
chr4	1957246	1957339	1911462	0	+	0.408602	(0.408,0.44]	chr4	191834	7	INTRON	INTRON	NSD2	ENSG00000109685.19	ENST00000508803.6:ENST00000382891.9:ENST00000353275.9:ENST00000382892.6:ENST00000382895.7:ENST00000312087.10:ENST00000677559.1:ENST00000482415.6:ENST00000382888.3:ENST00000507094.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	41	2	3.00595	3.7208750000000004	4.4358	0.00893097	0.00781452	0.0849778	0.0759016
chr4	4455990	4456090	2101462	0	-	0.58	(0.57,1]	chr4	208129	171	INTRON	INTRON	STX18	ENSG00000168818.10	ENST00000505286.5:ENST00000306200.7:ENST00000503861.5:ENST00000512195.5:ENST00000507908.5:ENST00000512780.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	25	2	2.66438	3.72084	4.7773	0.0171563	5.07088e-4	0.104099	0.0202328
chr4	55626522	55626622	2150600	0	-	0.52	(0.515,0.57]	chr4	211635	98	INTRON	INTRON	NMU	ENSG00000109255.11	ENST00000511469.5:ENST00000264218.7:ENST00000505262.5:ENST00000507338.1:ENST00000515325.5:ENST00000509371.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	178	2	3.35076	3.7207500000000002	4.09074	2.71948e-5	7.7429e-8	0.00430583	1.21354e-4
chr16	98898	98995	6425358	0	-	0.443299	(0.44,0.476]	chr16	617334	2	INTRON	INTRON	NPRL3	ENSG00000103148.17	ENST00000611875.5:ENST00000622194.4:ENST00000621703.4:ENST00000399953.7:ENST00000473674.5:ENST00000457916.5:ENST00000483663.5:ENST00000422814.5:ENST00000468260.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	108	2	2.97428	3.720695	4.46711	0.00125568	4.64215e-6	0.0323608	0.00144728
chr1	32793323	32793421	415919	0	-	0.438776	(0.408,0.44]	chr1	50188	17	INTRON	INTRON	YARS1	ENSG00000134684.13	ENST00000373477.9:ENST00000676297.1:ENST00000674654.1:ENST00000674629.1:ENST00000675785.2:ENST00000481895.6:ENST00000616261.2:ENST00000466052.1:ENST00000470377.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	83	2	3.20034	3.7206850000000005	4.24103	0.00398025	1.8653e-5	0.0549214	0.00329969
chr10	119049700	119049800	4704591	0	-	0.41	(0.408,0.44]	chr10	433935	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	EIF3A	ENSG00000107581.13	ENST00000369144.8:ENST00000541549.2	protein_coding	protein_coding	protein_coding	protein_coding	2	53	2	2.31565	3.7206650000000003	5.12568	0.0154718	7.90919e-4	0.100909	0.0258324
chr16	69747153	69747249	6508701	0	-	0.416667	(0.408,0.44]	chr16	630203	18	INTRON	INTRON	NOB1	ENSG00000141101.13	ENST00000268802.10:ENST00000569871.5:ENST00000564620.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	53	2	2.31565	3.7206650000000003	5.12568	0.0154718	7.90919e-4	0.100909	0.0258324
chr14	63506625	63506725	5907537	0	-	0.39	(0.378,0.408]	chr14	561132	524	INTRON	INTRON	PPP2R5E	ENSG00000154001.14	ENST00000337537.8:ENST00000422769.6:ENST00000555899.1:ENST00000556484.5:ENST00000553266.5:ENST00000556878.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	66	2	1.58349	3.72064	5.85779	0.0653091	2.83884e-5	0.180158	0.00422437
chr13	95200734	95200833	5638861	0	-	0.363636	(0.35,0.378]	chr13	537127	54	INTRON	INTRON	ABCC4	ENSG00000125257.16	ENST00000645237.2:ENST00000643051.1:ENST00000643842.1:ENST00000646439.1:ENST00000643816.1:ENST00000536256.3:ENST00000643556.1:ENST00000629385.1:ENST00000642524.1:ENST00000645532.1:ENST00000644471.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	38	2	2.79643	3.7205	4.64457	0.013543	0.012652	0.101363	0.0926667
chr6	32156478	32156568	2844470	0	+	0.366667	(0.35,0.378]	chr6	268234	1	INTRON	INTRON	PPT2:PPT2-EGFL8	ENSG00000221988.13:ENSG00000258388.7	ENST00000361568.6:ENST00000478521.5:ENST00000395523.5:ENST00000428388.6:ENST00000585246.5:ENST00000375137.6:ENST00000375143.6:ENST00000324816.11:ENST00000424499.1:ENST00000493548.5:ENST00000422437.5:ENST00000436118.2:ENST00000453656.6:ENST00000583227.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	38	2	2.79643	3.7205	4.64457	0.013543	0.012652	0.101363	0.0926667
chr7	132904473	132904573	3644107	0	-	0.36	(0.35,0.378]	chr7	338848	171	INTRON	INTRON	CHCHD3	ENSG00000106554.13	ENST00000262570.10:ENST00000448878.6:ENST00000496427.5:ENST00000423635.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	38	2	2.79643	3.7205	4.64457	0.013543	0.012652	0.101363	0.0926667
chr1	246929432	246929532	681938	0	-	0.36	(0.35,0.378]	chr1	80043	107	INTRON	INTRON	AHCTF1	ENSG00000153207.16	ENST00000648844.2:ENST00000326225.3:ENST00000366508.5	protein_coding	protein_coding	protein_coding	protein_coding	2	51	2	2.39583	3.720475	5.04512	0.0107976	0.00393262	0.0920575	0.0548259
chr12	116057285	116057385	5423339	0	-	0.37	(0.35,0.378]	chr12	518245	343	INTRON	INTRON	MED13L	ENSG00000123066.9	ENST00000281928.9:ENST00000650226.1:ENST00000648737.1:ENST00000548743.2:ENST00000647567.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	51	2	2.39583	3.720475	5.04512	0.0107976	0.00393262	0.0920575	0.0548259
chr15	65701568	65701661	6208866	0	-	0.247312	[0,0.28]	chr15	592514	4	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DENND4A	ENSG00000174485.16	ENST00000443035.8:ENST00000431932.6:ENST00000635620.2:ENST00000564674.5:ENST00000562028.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	45	2	2.74901	3.72046	4.69191	0.0269474	0.0188843	0.123442	0.118148
chr4	126621389	126621489	2236923	0	-	0.28	[0,0.28]	chr4	219023	1559	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	1	45	2	2.74901	3.72046	4.69191	0.0269474	0.0188843	0.123442	0.118148
chr7	119594884	119594984	3627285	0	-	0.34	(0.32,0.35]	chr7	337315	944	INTRON	INTRON	LINC02476	ENSG00000225546.6	ENST00000660268.1	lncRNA	lncRNA	lncRNA	lncRNA	2	54	2	2.01768	3.720365	5.42305	0.0361337	0.00149027	0.152563	0.035
chr7	149488816	149488915	3671744	0	-	0.494949	(0.476,0.515]	chr7	340778	13	UTR3	UTR3:EXON_MRNA:INTRON	ZNF746	ENSG00000181220.18	ENST00000644635.1:ENST00000340622.8:ENST00000458143.7:ENST00000685153.1:ENST00000461958.2	protein_coding	protein_coding	protein_coding	protein_coding	4	67	2	1.73688	3.720345	5.70381	0.0252731	1.75496e-4	0.133676	0.01216
chr12	116050888	116050988	5423275	0	-	0.37	(0.35,0.378]	chr12	518245	279	INTRON	INTRON	MED13L	ENSG00000123066.9	ENST00000281928.9:ENST00000650226.1:ENST00000648737.1:ENST00000548743.2:ENST00000647567.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	51	2	2.23043	3.720305	5.21018	0.0187487	0.00228003	0.117523	0.0426265
chr15	63670397	63670497	6199221	0	-	0.36	(0.35,0.378]	chr15	591222	3	INTRON	INTRON	HERC1	ENSG00000103657.14	ENST00000443617.7	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	2.6498	3.720295	4.79079	0.0210137	0.00846427	0.122348	0.0776969
chr21	38023015	38023115	7463111	0	-	0.37	(0.35,0.378]	chr21	760277	125	INTRON	INTRON	DSCR4	ENSG00000184029.9	ENST00000398948.5	lncRNA	lncRNA	lncRNA	lncRNA	1	38	2	2.6498	3.720295	4.79079	0.0210137	0.00846427	0.122348	0.0776969
chr5	10397292	10397344	2318094	0	+	0.346154	(0.32,0.35]	chr5	224665	1	CDS	CDS:EXON_MRNA	MARCHF6	ENSG00000145495.16	ENST00000274140.10:ENST00000449913.6:ENST00000511802.5:ENST00000503788.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	234	2	3.66674	3.720265	3.77379	6.77542e-5	5.9336e-7	0.00726476	4.19246e-4
chr19	46736545	46736633	7195166	0	-	0.454545	(0.44,0.476]	chr19	728930	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	STRN4	ENSG00000090372.15	ENST00000391910.7:ENST00000263280.11:ENST00000539396.5:ENST00000600358.7:ENST00000435164.6:ENST00000594704.5:ENST00000593979.6:ENST00000597063.6:ENST00000597021.6:ENST00000596012.2:ENST00000600710.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	38	2	3.2029	3.720225	4.23755	0.0263357	0.00308681	0.122221	0.0510391
chr7	73547905	73548003	3555226	0	-	0.469388	(0.44,0.476]	chr7	330846	39	INTRON	INTRON	BCL7B	ENSG00000106635.8	ENST00000223368.7:ENST00000411832.5:ENST00000482231.5:ENST00000454871.5:ENST00000463858.5:ENST00000448175.5:ENST00000455335.2:ENST00000464288.5:ENST00000416906.2:ENST00000493592.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	38	2	3.2029	3.720225	4.23755	0.0263357	0.00308681	0.122221	0.0510391
chr6	4914228	4914328	2792243	0	+	0.58	(0.57,1]	chr6	263614	215	INTRON	INTRON	CDYL	ENSG00000153046.18	ENST00000328908.9:ENST00000440139.5:ENST00000397588.8:ENST00000472453.5:ENST00000449732.6:ENST00000343762.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	33	2	2.66305	3.7201750000000002	4.7773	0.00327879	5.07088e-4	0.0509077	0.0202328
chr7	129042316	129042415	3636455	0	-	0.333333	(0.32,0.35]	chr7	338148	2	INTRON	INTRON	TNPO3	ENSG00000064419.14	ENST00000627585.2:ENST00000265388.10:ENST00000471234.5:ENST00000482320.5:ENST00000471166.1	protein_coding	protein_coding	protein_coding	protein_coding	6	90	2	1.77469	3.7201750000000002	5.66566	0.0115283	6.06695e-4	0.0960498	0.0226059
chr8	81705409	81705509	3979406	0	-	0.26	[0,0.28]	chr8	364616	19	INTRON	INTRON	ZFAND1	ENSG00000104231.11	ENST00000524305.5:ENST00000220669.10:ENST00000523096.5:ENST00000522520.5:ENST00000522032.1:ENST00000519464.5:ENST00000521895.5:ENST00000521287.5:ENST00000523431.5:ENST00000520635.5:ENST00000519523.5:ENST00000517588.5:ENST00000520604.5:ENST00000523361.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	45	2	2.43761	3.7201199999999996	5.00263	0.0423864	0.013055	0.161744	0.093385
chr8	73298927	73299027	3780273	0	+	0.52	(0.515,0.57]	chr8	350693	11	INTRON	INTRON	RDH10	ENSG00000121039.10	ENST00000240285.10:ENST00000521928.5:ENST00000519380.1	protein_coding	protein_coding	protein_coding	protein_coding	2	51	2	2.84387	3.720085	4.5963	0.00370287	0.0018149	0.0561162	0.0384415
chr17	46057077	46057176	6783499	0	-	0.282828	(0.28,0.32]	chr17	669181	60	INTRON	INTRON	KANSL1	ENSG00000120071.15	ENST00000574590.6:ENST00000572904.6:ENST00000432791.7:ENST00000575318.6:ENST00000638275.1:ENST00000262419.10:ENST00000648792.1:ENST00000639531.1:ENST00000639150.1:ENST00000639853.1:ENST00000571698.2:ENST00000639375.1:ENST00000577114.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	46	2	2.67975	3.7200299999999995	4.76031	0.0252505	0.00656106	0.12011	0.0735539
chr11	3916239	3916339	4724072	0	+	0.38	(0.378,0.408]	chr11	437138	123	INTRON	INTRON	STIM1	ENSG00000167323.12	ENST00000525403.5:ENST00000526596.2:ENST00000300737.8:ENST00000616714.4:ENST00000527651.5:ENST00000532610.5:ENST00000532919.5:ENST00000530554.5:ENST00000524822.5:ENST00000528656.5:ENST00000525055.5	protein_coding	protein_coding	protein_coding	protein_coding	2	51	2	1.97143	3.71988	5.46833	0.0398704	7.05018e-4	0.161534	0.024224
chr1	173867429	173867525	587087	0	-	0.520833	(0.515,0.57]	chr1	70638	5	EXON_LNCRNA	EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GAS5	ENSG00000234741.9	ENST00000687189.1:ENST00000689238.1:ENST00000687549.1:ENST00000687435.1:ENST00000687987.1:ENST00000686995.1:ENST00000689958.1:ENST00000687063.1:ENST00000689895.1:ENST00000690228.1:ENST00000688573.1:ENST00000412059.6:ENST00000685107.1:ENST00000449289.6:ENST00000691213.1:ENST00000436285.6:ENST00000436656.6:ENST00000422008.6:ENST00000691137.1:ENST00000450589.6:ENST00000448718.6:ENST00000693348.1:ENST00000690349.1:ENST00000690761.1:ENST00000687022.1:ENST00000686878.1:ENST00000430245.5:ENST00000422183.6:ENST00000442067.6:ENST00000693450.1:ENST00000690448.1:ENST00000416952.6:ENST00000688895.1:ENST00000687710.1:ENST00000693030.1:ENST00000692671.1:ENST00000688557.1:ENST00000456812.7:ENST00000431268.5:ENST00000455838.6:ENST00000449589.6:ENST00000444470.6:ENST00000693469.1:ENST00000685758.1:ENST00000458220.2:ENST00000687409.1:ENST00000688952.1:ENST00000689860.1:ENST00000686918.1:ENST00000691056.1:ENST00000689469.1:ENST00000685039.1:ENST00000414075.6:ENST00000692994.1:ENST00000691982.1:ENST00000690172.1:ENST00000686460.1:ENST00000691712.1:ENST00000685159.1:ENST00000685008.1:ENST00000452197.5:ENST00000454068.5:ENST00000650796.1:ENST00000451607.5:ENST00000693521.1:ENST00000690941.1:ENST00000693459.1:ENST00000686231.1:ENST00000684949.1:ENST00000425771.6:ENST00000432536.5:ENST00000456293.5:ENST00000443799.5:ENST00000421068.5	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	41	1061	2	3.4487	3.71985	3.991	2.13282e-9	8.65749e-11	8.86366e-6	1.18093e-6
chr17	32350907	32350998	6597981	0	+	0.406593	(0.378,0.408]	chr17	641878	1	UTR5	UTR5:EXON_MRNA:SS3_PROX:INTRON	ZNF207	ENSG00000010244.19	ENST00000321233.10:ENST00000394673.6:ENST00000394670.9:ENST00000579634.5:ENST00000580759.5:ENST00000342555.10:ENST00000577908.5:ENST00000394679.9:ENST00000582165.1:ENST00000577324.1:ENST00000578918.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	40	2	2.38873	3.71982	5.05091	0.0458857	0.00118558	0.149888	0.031662
chr14	73914591	73914690	5786940	0	+	0.474747	(0.44,0.476]	chr14	548223	48	INTRON	INTRON	ZNF410	ENSG00000119725.21	ENST00000540593.5:ENST00000555730.6:ENST00000324593.10:ENST00000556396.5:ENST00000555044.6:ENST00000541357.6:ENST00000398139.7:ENST00000442160.7:ENST00000334521.8:ENST00000615736.4:ENST00000554316.1:ENST00000557679.5:ENST00000555620.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	39	2	3.3111	3.7197649999999998	4.12843	0.0337192	0.0020006	0.134145	0.0412555
chr6	147681537	147681636	2990811	0	+	0.292929	(0.28,0.32]	chr6	280163	50	INTRON	INTRON	ENSG00000227681	ENSG00000227681.5	ENST00000427015.1:ENST00000432506.5:ENST00000442094.5	lncRNA	lncRNA	lncRNA	lncRNA	3	134	2	3.39009	3.71968	4.04927	2.00347e-4	1.74666e-4	0.0129814	0.0114806
chr19	21411252	21411350	7040966	0	+	0.326531	(0.32,0.35]	chr19	702032	26	INTRON	INTRON	ZNF493	ENSG00000196268.12	ENST00000596302.5:ENST00000392288.7:ENST00000355504.4:ENST00000594390.5:ENST00000598152.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	43	2	2.37794	3.719665	5.06139	0.0498601	0.00179023	0.156383	0.0392749
chr7	39968211	39968311	3310801	0	+	0.35	(0.32,0.35]	chr7	307478	154	INTRON	INTRON	CDK13	ENSG00000065883.17	ENST00000340829.10:ENST00000181839.10:ENST00000613626.4:ENST00000646039.1:ENST00000643859.1	protein_coding	protein_coding	protein_coding	protein_coding	1	43	2	2.37794	3.719665	5.06139	0.0498601	0.00179023	0.156383	0.0392749
chr19	1357393	1357493	6994723	0	+	0.34	(0.32,0.35]	chr19	693047	4	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	PWWP3A	ENSG00000160953.17	ENST00000590695.2:ENST00000591337.7:ENST00000590866.2:ENST00000591433.6:ENST00000591806.6:ENST00000588810.6:ENST00000652273.1:ENST00000415183.7:ENST00000587460.6:ENST00000627377.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	160	2	3.37872	3.7195799999999997	4.06044	7.3644e-5	6.50329e-5	0.0071508	0.00714826
chr7	129832197	129832295	3636748	0	-	0.55102	(0.515,0.57]	chr7	338171	16	UTR3	UTR3:EXON_MRNA	UBE2H	ENSG00000186591.13	ENST00000355621.8:ENST00000649897.1	protein_coding	protein_coding	protein_coding	protein_coding	1	37	2	2.12971	3.71946	5.30921	0.0757903	1.98811e-4	0.194427	0.0122787
chr1	8755436	8755536	373162	0	-	0.4	(0.378,0.408]	chr1	43549	17	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000656437.1:ENST00000659924.1	protein_coding	protein_coding	protein_coding	protein_coding	1	40	2	2.66785	3.71945	4.77105	0.0224639	0.00330823	0.11692	0.0527031
chr1	100285722	100285822	172470	0	+	0.39	(0.378,0.408]	chr1	18767	4	SS5_PROX	SS5_PROX:INTRON	RTCA	ENSG00000137996.13	ENST00000370128.9:ENST00000260563.4	protein_coding	protein_coding	protein_coding	protein_coding	1	40	2	2.66785	3.71945	4.77105	0.0224639	0.00330823	0.11692	0.0527031
chr20	49151381	49151481	7352003	0	-	0.29	(0.28,0.32]	chr20	749653	4	SS5_PROX	SS5_PROX:INTRON	STAU1	ENSG00000124214.21	ENST00000371856.7:ENST00000371828.7:ENST00000340954.11:ENST00000347458.9:ENST00000360426.8:ENST00000371792.5:ENST00000371802.5:ENST00000437404.2	protein_coding	protein_coding	protein_coding	protein_coding	2	56	2	2.33771	3.7192	5.10069	0.0142701	0.00610574	0.103838	0.0676501
chr9	123238065	123238165	4340176	0	-	0.31	(0.28,0.32]	chr9	398963	7	INTRON	INTRON	STRBP	ENSG00000165209.19	ENST00000348403.10:ENST00000360998.3:ENST00000407982.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	56	2	2.33771	3.7192	5.10069	0.0142701	0.00610574	0.103838	0.0676501
chr17	17212595	17212692	6735805	0	-	0.505155	(0.476,0.515]	chr17	660861	5	UTR3	UTR3:EXON_MRNA	FLCN	ENSG00000154803.13	ENST00000285071.9	protein_coding	protein_coding	protein_coding	protein_coding	6	162	2	2.6607	3.719195	4.77769	2.14753e-4	1.41688e-6	0.0128622	7.75185e-4
chr1	3633108	3633204	363512	0	-	0.541667	(0.515,0.57]	chr1	42544	9	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	WRAP73	ENSG00000116213.16	ENST00000378322.7:ENST00000270708.12:ENST00000471223.1:ENST00000424367.5:ENST00000497940.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	34	2	2.46104	3.71913	4.97722	0.032841	0.00168681	0.145164	0.0370386
chr20	17678499	17678599	7320238	0	-	0.41	(0.408,0.44]	chr20	745255	176	INTRON	INTRON	RRBP1	ENSG00000125844.17	ENST00000360807.8:ENST00000377807.6:ENST00000377813.6:ENST00000455029.3:ENST00000398782.2	protein_coding	protein_coding	protein_coding	protein_coding	1	39	2	2.43988	3.719125	4.99837	0.0398236	0.00131369	0.143072	0.0333932
chr3	33713012	33713112	1653959	0	-	0.32	(0.28,0.32]	chr3	169693	157	INTRON	INTRON	CLASP2	ENSG00000163539.18	ENST00000399362.8:ENST00000682230.1:ENST00000468888.6:ENST00000359576.9:ENST00000467956.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	56	2	2.13651	3.7190199999999995	5.30153	0.0265696	0.00332518	0.134088	0.0512081
chr16	11847167	11847255	6445852	0	-	0.443182	(0.44,0.476]	chr16	621010	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RSL1D1	ENSG00000171490.13	ENST00000571133.6:ENST00000396503.7:ENST00000573618.5:ENST00000355674.9:ENST00000573029.1:ENST00000573251.5:ENST00000570767.5:ENST00000572090.5:ENST00000571988.5:ENST00000573791.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	38	2	2.29425	3.7190149999999997	5.14378	0.0518406	0.00184943	0.176696	0.0388609
chr17	1542140	1542234	6700893	0	-	0.457447	(0.44,0.476]	chr17	655866	1	INTRON	INTRON	PITPNA	ENSG00000174238.16	ENST00000313486.12:ENST00000575288.5:ENST00000574991.5:ENST00000576722.5:ENST00000575895.5:ENST00000576761.5:ENST00000576010.6:ENST00000573231.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	38	2	2.29425	3.7190149999999997	5.14378	0.0518406	0.00184943	0.176696	0.0388609
chr2	55198521	55198620	1122306	0	-	0.464646	(0.44,0.476]	chr2	120227	164	INTRON	INTRON	CLHC1	ENSG00000162994.16	ENST00000401408.6:ENST00000428621.5:ENST00000494539.5:ENST00000407122.5:ENST00000406076.5:ENST00000411884.2:ENST00000487320.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	38	2	2.29425	3.7190149999999997	5.14378	0.0518406	0.00184943	0.176696	0.0388609
chr9	136409467	136409567	4374427	0	-	0.55	(0.515,0.57]	chr9	402882	4	SS3_PROX	SS3_PROX:SS5_PROX:INTRON	ENTR1	ENSG00000165689.17	ENST00000357365.8:ENST00000298537.11:ENST00000371725.7:ENST00000371723.4:ENST00000446833.1	protein_coding	protein_coding	protein_coding	protein_coding	2	75	2	3.25412	3.718895	4.18367	0.00224554	2.93017e-5	0.0435144	0.00449807
chr20	63946843	63946943	7363737	0	-	0.44	(0.408,0.44]	chr20	751472	2	SS3_PROX	SS3_PROX:INTRON	UCKL1	ENSG00000198276.16	ENST00000354216.11:ENST00000358711.7:ENST00000369908.9:ENST00000483710.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	39	2	2.6542	3.71884	4.78348	0.0227514	0.00290352	0.117618	0.0494641
chr4	48197481	48197581	2135981	0	-	0.42	(0.408,0.44]	chr4	210604	209	INTRON	INTRON	TEC	ENSG00000135605.13	ENST00000381501.8:ENST00000505452.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	39	2	2.6542	3.71884	4.78348	0.0227514	0.00290352	0.117618	0.0494641
chr5	177149099	177149199	2553853	0	+	0.44	(0.408,0.44]	chr5	243927	118	INTRON	INTRON	NSD1	ENSG00000165671.22	ENST00000508896.6:ENST00000689549.1:ENST00000354179.9:ENST00000686993.1:ENST00000689326.1:ENST00000439151.7:ENST00000510954.6:ENST00000689345.1:ENST00000347982.9:ENST00000687453.1:ENST00000685206.1:ENST00000638627.3:ENST00000644863.2:ENST00000688613.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	39	2	2.6542	3.71884	4.78348	0.0227514	0.00290352	0.117618	0.0494641
chr2	27355986	27356086	1086871	0	-	0.35	(0.32,0.35]	chr2	116364	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	GTF3C2	ENSG00000115207.15	ENST00000359541.6:ENST00000264720.8:ENST00000457748.1:ENST00000423998.1	protein_coding	protein_coding	protein_coding	protein_coding	1	44	2	2.79707	3.7187650000000003	4.64046	0.0170923	0.00724767	0.104099	0.0756327
chr4	2470628	2470714	1911837	0	+	0.360465	(0.35,0.378]	chr4	191909	2	SS3_PROX	SS3_PROX:INTRON	RNF4	ENSG00000063978.16	ENST00000503659.5:ENST00000504224.5:ENST00000541204.5:ENST00000502316.5:ENST00000509388.5:ENST00000507247.5:ENST00000314289.13:ENST00000511843.5:ENST00000509258.5:ENST00000513284.5:ENST00000504782.5:ENST00000507784.5:ENST00000513578.5:ENST00000511859.5:ENST00000511892.5:ENST00000513643.5:ENST00000503123.5:ENST00000509206.1:ENST00000506706.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	43	2	2.94111	3.7186850000000002	4.49626	0.0104563	0.00917582	0.0855292	0.0855102
chr10	63467475	63467575	4635408	0	-	0.37	(0.35,0.378]	chr10	426242	16	INTRON	INTRON	JMJD1C	ENSG00000171988.20	ENST00000633035.1	protein_coding	processed_transcript	protein_coding	processed_transcript	5	78	2	1.63783	3.7186500000000002	5.79947	0.0250627	2.36402e-4	0.133086	0.0140941
chr1	120341078	120341162	534579	0	-	0.678571	(0.57,1]	chr1	62807	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ENSG00000223804	ENSG00000223804.5	ENST00000616141.4:ENST00000617318.4:ENST00000613290.4:ENST00000621564.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	1	26	2	3.2676	3.7182049999999998	4.16881	0.00574776	0.00176203	0.0681402	0.0376652
chr8	140629823	140629923	4076509	0	-	0.63	(0.57,1]	chr8	370289	26	INTRON	INTRON	AGO2	ENSG00000123908.12	ENST00000220592.10:ENST00000519980.5:ENST00000523609.5:ENST00000517293.5:ENST00000518019.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	26	2	3.2676	3.7182049999999998	4.16881	0.00574776	0.00176203	0.0681402	0.0376652
chrX	13319007	13319104	7622246	0	+	0.443299	(0.44,0.476]	chrX	780298	1	EXON_LNCRNA	EXON_LNCRNA	GS1-600G8.3	ENSG00000231216.1	ENST00000431486.1	lncRNA	lncRNA	lncRNA	lncRNA	7	235	2	3.53461	3.7182	3.90179	1.82232e-6	1.47946e-6	8.19478e-4	7.99867e-4
chr19	11775326	11775425	7018805	0	+	0.585859	(0.57,1]	chr19	697771	78	INTRON	INTRON	ZNF441	ENSG00000197044.11	ENST00000357901.5:ENST00000462251.1:ENST00000409902.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	39	2	2.30825	3.71819	5.12813	0.00499769	8.62401e-5	0.0617433	0.00783027
chr5	32172645	32172745	2597499	0	-	0.52	(0.515,0.57]	chr5	246744	284	INTRON	INTRON	GOLPH3	ENSG00000113384.14	ENST00000265070.7:ENST00000503610.5:ENST00000512668.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	18	482	2	3.31968	3.718185	4.11669	1.30281e-7	3.10352e-10	1.72177e-4	3.17503e-6
chr2	10788496	10788596	1066469	0	-	0.46	(0.44,0.476]	chr2	113830	4	SS5_PROX	SS5_PROX:INTRON	PDIA6	ENSG00000143870.13	ENST00000272227.8:ENST00000381611.8:ENST00000404371.6:ENST00000617249.4:ENST00000540494.5:ENST00000404824.2	protein_coding	protein_coding	protein_coding	protein_coding	4	69	2	2.29258	3.71818	5.14378	0.00279559	0.00184943	0.0488779	0.0388609
chr21	22209919	22210000	7384466	0	+	0.555556	(0.515,0.57]	chr21	752718	1	EXON_LNCRNA	EXON_LNCRNA	ENSG00000226043	ENSG00000226043.2	ENST00000667099.1:ENST00000654607.1:ENST00000444130.1	lncRNA	lncRNA	lncRNA	lncRNA	4	111	2	3.02733	3.7180750000000002	4.40882	1.80662e-4	4.58078e-6	0.0121878	0.00144313
chr17	43096502	43096582	6775568	0	-	0.525	(0.515,0.57]	chr17	667786	2	INTRON	INTRON	BRCA1	ENSG00000012048.23	ENST00000471181.7:ENST00000352993.7:ENST00000357654.9:ENST00000468300.5:ENST00000586385.5:ENST00000591534.5:ENST00000591849.5:ENST00000493795.5:ENST00000491747.6:ENST00000461221.5:ENST00000478531.5:ENST00000484087.5:ENST00000493919.5:ENST00000487825.5:ENST00000354071.7:ENST00000634433.1:ENST00000470026.5:ENST00000652672.1:ENST00000477152.5:ENST00000494123.5:ENST00000492859.5:ENST00000497488.1:ENST00000473961.5:ENST00000642945.1:ENST00000476777.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	44	2	2.39351	3.71788	5.04225	0.0100431	0.00131841	0.0881096	0.0331539
chr15	41060525	41060624	6152665	0	-	0.343434	(0.32,0.35]	chr15	585356	2	INTRON	INTRON	INO80	ENSG00000128908.18	ENST00000648947.1:ENST00000401393.7:ENST00000558357.6:ENST00000559995.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	55	2	2.67068	3.717845	4.76501	0.0114287	0.00406276	0.0886611	0.0578984
chr13	60083644	60083744	5603570	0	-	0.42	(0.408,0.44]	chr13	535529	405	INTRON	INTRON	DIAPH3	ENSG00000139734.19	ENST00000400324.9:ENST00000377908.6:ENST00000400319.5:ENST00000400320.5:ENST00000267215.8	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	3.20437	3.7176649999999998	4.23096	0.0278028	0.00306596	0.123904	0.0509893
chr15	80123144	80123222	6071684	0	+	0.423077	(0.408,0.44]	chr15	578366	2	SS5_PROX	SS5_PROX:INTRON	ZFAND6	ENSG00000086666.19	ENST00000613266.4:ENST00000561060.5:ENST00000559157.5:ENST00000261749.11:ENST00000564367.5:ENST00000558494.5:ENST00000618205.4:ENST00000559835.5:ENST00000559775.5:ENST00000558688.5:ENST00000560976.5:ENST00000558390.5:ENST00000616533.4:ENST00000558087.5:ENST00000558997.5:ENST00000558724.1	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	3.20437	3.7176649999999998	4.23096	0.0278028	0.00306596	0.123904	0.0509893
chr20	21131863	21131957	7246966	0	+	0.425532	(0.408,0.44]	chr20	735791	1	CDS	CDS:EXON_MRNA:SS3_PROX:INTRON	KIZ	ENSG00000088970.16	ENST00000619574.4:ENST00000620891.4:ENST00000612654.1:ENST00000622184.4:ENST00000611685.4:ENST00000616848.4:ENST00000620553.2:ENST00000619189.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	38	2	3.20437	3.7176649999999998	4.23096	0.0278028	0.00306596	0.123904	0.0509893
chr20	5565858	5565951	7311875	0	-	0.204301	[0,0.28]	chr20	744538	4	INTRON	INTRON	GPCPD1	ENSG00000125772.14	ENST00000379019.7:ENST00000481038.5:ENST00000418646.5:ENST00000633552.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	47	2	3.05114	3.717505	4.38387	0.0501911	0.0075493	0.156383	0.0773151
chr1	171485835	171485935	253217	0	+	0.63	(0.57,1]	chr1	30095	1	SS5_PROX	SS5_PROX:INTRON	PRRC2C	ENSG00000117523.18	ENST00000647382.2:ENST00000367742.7:ENST00000476522.5:ENST00000338920.8:ENST00000467601.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	70	2	2.85802	3.71724	4.57646	3.01883e-4	5.08048e-7	0.0160895	3.80889e-4
chr2	188338277	188338377	950024	0	+	0.48	(0.476,0.515]	chr2	103532	435	INTRON	INTRON	GULP1	ENSG00000144366.16	ENST00000409843.5:ENST00000409830.6:ENST00000410051.5:ENST00000479019.5:ENST00000409927.5:ENST00000409805.5:ENST00000359135.7:ENST00000409580.5:ENST00000409637.7:ENST00000409609.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	38	2	2.28264	3.717035	5.15143	0.0534132	0.00166579	0.179876	0.0369207
chr1	168008988	168009088	249222	0	+	0.5	(0.476,0.515]	chr1	29602	38	INTRON	INTRON	DCAF6	ENSG00000143164.16	ENST00000432587.6:ENST00000367843.7:ENST00000470721.5:ENST00000367840.4:ENST00000312263.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	81	2	3.29074	3.716965	4.14319	0.00272563	3.39012e-5	0.0467523	0.0046443
chr19	53079193	53079292	7210320	0	-	0.393939	(0.378,0.408]	chr19	731876	14	INTRON	INTRON	ZNF160	ENSG00000170949.18	ENST00000599056.5:ENST00000418871.5:ENST00000429604.5:ENST00000683776.1:ENST00000599247.5:ENST00000601982.5:ENST00000355147.9:ENST00000599729.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	76	2	1.54765	3.716945	5.88624	0.0334147	1.19481e-4	0.146709	0.00988798
chr22	41847845	41847945	7526145	0	+	0.23	[0,0.28]	chr22	769353	141	INTRON	INTRON	SREBF2	ENSG00000198911.12	ENST00000612482.4:ENST00000361204.9:ENST00000424354.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	73	2	1.91898	3.7169299999999996	5.51488	0.0266433	0.00314116	0.134413	0.0500389
chr7	111223007	111223107	3620712	0	-	0.23	[0,0.28]	chr7	337093	2591	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	73	2	1.88025	3.716905	5.55356	0.029906	0.00278704	0.142135	0.0469265
chr16	14615893	14615992	6449706	0	-	0.373737	(0.35,0.378]	chr16	621343	47	INTRON	INTRON	PARN	ENSG00000140694.17	ENST00000651865.1:ENST00000437198.7:ENST00000651348.1:ENST00000650990.1:ENST00000651760.1:ENST00000652541.1:ENST00000652727.1:ENST00000652066.1:ENST00000651300.1:ENST00000420015.6:ENST00000652051.1:ENST00000341484.11:ENST00000539279.5:ENST00000651049.1:ENST00000650960.1:ENST00000651634.1:ENST00000564113.6:ENST00000652411.1:ENST00000652501.1:ENST00000651027.1:ENST00000651913.1:ENST00000563641.6:ENST00000651241.1:ENST00000538472.5:ENST00000566021.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	41	2	2.53856	3.716895	4.89523	0.0326077	0.00253947	0.133687	0.0465056
chr16	16566894	16566993	6311531	0	+	0.363636	(0.35,0.378]	chr16	604098	669	INTRON	INTRON	ENSG00000260126	ENSG00000260126.2	ENST00000567465.2	lncRNA	lncRNA	lncRNA	lncRNA	1	41	2	2.53856	3.716895	4.89523	0.0326077	0.00253947	0.133687	0.0465056
chr20	31758966	31759064	7253859	0	+	0.255102	[0,0.28]	chr20	736739	10	INTRON	INTRON	TPX2	ENSG00000088325.16	ENST00000340513.4:ENST00000300403.11	protein_coding	protein_coding	protein_coding	protein_coding	2	62	2	2.48813	3.71687	4.94561	0.0150263	0.00953591	0.0994339	0.0863913
chr1	245970697	245970797	675337	0	-	0.38	(0.378,0.408]	chr1	79709	147	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000493441.5:ENST00000488153.5:ENST00000492487.5:ENST00000391836.3:ENST00000464398.1:ENST00000453676.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	54	2	1.94681	3.716765	5.48672	0.0457723	1.83012e-4	0.149888	0.01176
chr2	175941080	175941180	1272585	0	-	0.46	(0.44,0.476]	chr2	134542	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	LNPK	ENSG00000144320.14	ENST00000272748.9:ENST00000544803.5:ENST00000409660.5:ENST00000431754.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	74	2	1.85696	3.716755	5.57655	0.0107727	3.3967e-4	0.0920575	0.0170719
chr7	152655926	152656025	3681417	0	-	0.40404	(0.378,0.408]	chr7	341677	62	INTRON	INTRON	XRCC2	ENSG00000196584.3	ENST00000359321.2:ENST00000495707.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	54	2	2.26009	3.71645	5.17281	0.0188651	7.27294e-4	0.108861	0.0245647
chr19	3432818	3432917	7000291	0	+	0.535354	(0.515,0.57]	chr19	694183	73	INTRON	INTRON	NFIC	ENSG00000141905.19	ENST00000641145.1:ENST00000589123.5:ENST00000395111.7:ENST00000586919.5:ENST00000341919.7:ENST00000443272.3:ENST00000590282.5	protein_coding	protein_coding	protein_coding	protein_coding	2	44	2	2.32836	3.71642	5.10448	0.0126662	0.0010345	0.0982897	0.029231300000000002
chr22	44033096	44033195	7528432	0	+	0.555556	(0.515,0.57]	chr22	769741	12	INTRON	INTRON	PARVB	ENSG00000188677.15	ENST00000406477.7:ENST00000338758.12:ENST00000402876.3:ENST00000619710.4:ENST00000444029.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	44	2	2.32836	3.71642	5.10448	0.0126662	0.0010345	0.0982897	0.029231300000000002
chr2	3579038	3579136	686939	0	+	0.428571	(0.408,0.44]	chr2	80601	14	EXON_MRNA	EXON_MRNA:INTRON	RPS7	ENSG00000171863.15	ENST00000645674.2:ENST00000646909.1:ENST00000647131.1:ENST00000462576.5:ENST00000403564.5:ENST00000407445.8:ENST00000481006.1:ENST00000406376.1:ENST00000645540.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	38	2	2.2957	3.71636	5.13702	0.0516458	0.00202889	0.176696	0.04086
chr15	52058032	52058132	6029413	0	+	0.36	(0.35,0.378]	chr15	574447	75	INTRON	INTRON	MAPK6	ENSG00000069956.14	ENST00000691380.1:ENST00000681888.1:ENST00000261845.7:ENST00000680066.1:ENST00000680777.1:ENST00000680652.1	protein_coding	protein_coding	protein_coding	protein_coding	2	51	2	2.44701	3.71631	4.98561	0.00900997	0.00474226	0.0851009	0.0600445
chr1	145825116	145825186	210641	0	+	0.571429	(0.57,1]	chr1	23019	2	INTRON	INTRON	POLR3C	ENSG00000186141.9	ENST00000471254.5:ENST00000369294.5:ENST00000334163.4:ENST00000466003.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	34	2	2.86892	3.716285	4.56365	0.00129848	0.00125753	0.0333764	0.0323608
chr9	136727586	136727683	4375403	0	-	0.649485	(0.57,1]	chr9	403179	1	SS5_PROX	SS5_PROX:INTRON	SNHG7	ENSG00000233016.8	ENST00000414282.5:ENST00000685573.1:ENST00000686963.1:ENST00000653276.1:ENST00000416970.5:ENST00000668354.1:ENST00000447221.1	lncRNA	lncRNA	lncRNA	lncRNA	2	34	2	2.86892	3.716285	4.56365	0.00129848	0.00125753	0.0333764	0.0323608
chr8	127952532	127952632	3861644	0	+	0.36	(0.35,0.378]	chr8	355467	92	INTRON	INTRON	PVT1	ENSG00000249859.13	ENST00000667305.1:ENST00000690350.1:ENST00000653522.1:ENST00000661830.1:ENST00000657289.1:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000656880.1:ENST00000660200.1:ENST00000657211.1:ENST00000653845.1:ENST00000517525.2:ENST00000651587.1:ENST00000692980.1:ENST00000666353.1:ENST00000654324.1:ENST00000657693.1:ENST00000666080.1:ENST00000667539.1:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000664293.1:ENST00000662410.1:ENST00000670795.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000654091.1:ENST00000657356.1:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000662061.1:ENST00000656491.1:ENST00000667714.1:ENST00000654105.1:ENST00000665721.1:ENST00000660438.1:ENST00000659326.1:ENST00000666842.1:ENST00000517790.2:ENST00000654369.1:ENST00000664995.1:ENST00000656532.1:ENST00000661988.1:ENST00000670714.1:ENST00000669951.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000656693.1:ENST00000668123.1:ENST00000666776.1:ENST00000664299.1:ENST00000659912.1:ENST00000670532.1:ENST00000660896.1:ENST00000523068.2:ENST00000519481.6:ENST00000669082.1:ENST00000671088.1:ENST00000670204.1:ENST00000652695.1:ENST00000517838.6:ENST00000663461.1:ENST00000513868.6:ENST00000670626.1	lncRNA	lncRNA	lncRNA	lncRNA	2	51	2	2.17079	3.7160200000000003	5.26125	0.0225978	0.00191117	0.124921	0.03947
chr3	20170326	20170420	1640702	0	-	0.457447	(0.44,0.476]	chr3	168333	10	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	SGO1	ENSG00000129810.15	ENST00000306698.6:ENST00000419233.6:ENST00000263753.8:ENST00000425061.5:ENST00000443724.5:ENST00000421451.5:ENST00000452020.5:ENST00000442720.5:ENST00000412997.6:ENST00000460637.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	175	2	3.62261	3.71597	3.80933	9.15705e-6	8.71795e-6	0.00227467	0.00217645
chr15	28314149	28314248	6123987	0	-	0.262626	[0,0.28]	chr15	583407	143	INTRON	INTRON	HERC2	ENSG00000128731.18	ENST00000261609.13:ENST00000564734.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	73	2	1.95669	3.715915	5.47514	0.0237518	0.00354561	0.129075	0.0529186
chr19	40805263	40805362	7070502	0	+	0.515152	(0.476,0.515]	chr19	706575	13	EXON_MRNA	EXON_MRNA:INTRON	EGLN2	ENSG00000269858.6	ENST00000303961.9:ENST00000406058.6:ENST00000593726.5:ENST00000597746.5:ENST00000594140.5:ENST00000599579.5:ENST00000593445.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	41	2	3.10264	3.715895	4.32915	0.0124637	0.00543163	0.0973643	0.0645052
chr2	127797766	127797865	1225751	0	-	0.50505	(0.476,0.515]	chr2	130519	264	INTRON	INTRON	WDR33	ENSG00000136709.12	ENST00000322313.9:ENST00000436787.5:ENST00000393006.5:ENST00000409658.7:ENST00000408998.1	protein_coding	protein_coding	protein_coding	protein_coding	1	41	2	3.10264	3.715895	4.32915	0.0124637	0.00543163	0.0973643	0.0645052
chr6	26122914	26123014	3070853	0	-	0.5	(0.476,0.515]	chr6	285403	74	INTRON	INTRON	H2BC4	ENSG00000180596.8	ENST00000314332.5	protein_coding	protein_coding	protein_coding	protein_coding	1	41	2	3.10264	3.715895	4.32915	0.0124637	0.00543163	0.0973643	0.0645052
chr4	1835838	1835928	2095558	0	-	0.411111	(0.408,0.44]	chr4	207314	5	INTRON	INTRON	LETM1	ENSG00000168924.15	ENST00000302787.3:ENST00000505551.5:ENST00000466175.5:ENST00000512669.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	55	2	2.57295	3.7158350000000002	4.85872	0.00640423	0.00221911	0.0694534	0.0435144
chr1	50520679	50520778	447843	0	-	0.525253	(0.515,0.57]	chr1	54177	285	INTRON	INTRON	FAF1	ENSG00000185104.21	ENST00000396153.7:ENST00000494400.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	35	2	2.83501	3.715655	4.5963	0.0117686	0.00370287	0.0894475	0.0561162
chr1	167942234	167942334	248544	0	+	0.52	(0.515,0.57]	chr1	29536	46	INTRON	INTRON	DCAF6	ENSG00000143164.16	ENST00000450548.5:ENST00000470919.5:ENST00000432587.6:ENST00000367843.7:ENST00000470721.5:ENST00000367840.4:ENST00000312263.10:ENST00000455334.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	35	2	2.83501	3.715655	4.5963	0.0117686	0.00370287	0.0894475	0.0561162
chr19	38661744	38661844	7065869	0	+	0.56	(0.515,0.57]	chr19	705486	131	INTRON	INTRON	ACTN4	ENSG00000130402.13	ENST00000252699.7:ENST00000588618.5:ENST00000440400.2:ENST00000424234.7:ENST00000589528.1:ENST00000390009.7:ENST00000495553.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	35	2	2.83501	3.715655	4.5963	0.0117686	0.00370287	0.0894475	0.0561162
chr2	39405700	39405800	1103985	0	-	0.52	(0.515,0.57]	chr2	118511	260	INTRON	INTRON	MAP4K3	ENSG00000011566.15	ENST00000263881.8:ENST00000341681.9:ENST00000429397.5:ENST00000437968.1:ENST00000484274.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	35	2	2.83501	3.715655	4.5963	0.0117686	0.00370287	0.0894475	0.0561162
chr12	48100404	48100498	5318400	0	-	0.531915	(0.515,0.57]	chr12	506210	9	INTRON	INTRON	SENP1	ENSG00000079387.14	ENST00000549518.6:ENST00000552189.5:ENST00000448372.5:ENST00000549595.5:ENST00000551798.1:ENST00000547181.5:ENST00000549882.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	33	2	2.83188	3.71551	4.59914	0.0108207	0.00616166	0.0920575	0.0676501
chr17	78221238	78221337	6682242	0	+	0.525253	(0.515,0.57]	chr17	652756	41	INTRON	INTRON	BIRC5	ENSG00000089685.15	ENST00000301633.8:ENST00000350051.8:ENST00000590925.6:ENST00000374948.6:ENST00000592734.5:ENST00000592115.5:ENST00000586192.5:ENST00000587746.5:ENST00000591800.1:ENST00000589892.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	33	2	2.83188	3.71551	4.59914	0.0108207	0.00616166	0.0920575	0.0676501
chr3	138672586	138672686	1829853	0	-	0.52	(0.515,0.57]	chr3	183941	70	INTRON	INTRON	PIK3CB	ENSG00000051382.9	ENST00000674063.1:ENST00000289153.6:ENST00000477593.5:ENST00000469284.6:ENST00000544716.5:ENST00000462898.5:ENST00000481749.5:ENST00000493568.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	33	2	2.83188	3.71551	4.59914	0.0108207	0.00616166	0.0920575	0.0676501
chr5	139186050	139186150	2735337	0	-	0.53	(0.515,0.57]	chr5	257600	307	INTRON	INTRON	SIL1	ENSG00000120725.13	ENST00000394817.7:ENST00000265195.9:ENST00000509534.5:ENST00000508639.5:ENST00000507002.5:ENST00000505830.5:ENST00000504666.5:ENST00000509400.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	33	2	2.83188	3.71551	4.59914	0.0108207	0.00616166	0.0920575	0.0676501
chr9	111897713	111897813	4184460	0	+	0.53	(0.515,0.57]	chr9	381683	4	SS5_PROX	SS5_PROX:INTRON	UGCG	ENSG00000148154.10	ENST00000374279.4:ENST00000489355.1:ENST00000495085.1:ENST00000490110.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	33	2	2.74772	3.71541	4.6831	0.0142192	0.00471288	0.103638	0.0600108
chr1	86722139	86722239	153319	0	+	0.43	(0.408,0.44]	chr1	16894	2	SS3_PROX	SS3_PROX:INTRON	SH3GLB1	ENSG00000097033.14	ENST00000616170.4:ENST00000535010.5:ENST00000370558.8:ENST00000482504.1	protein_coding	protein_coding	protein_coding	protein_coding	1	40	2	2.18807	3.71537	5.24267	0.0708044	4.83767e-4	0.184528	0.0199261
chr2	31973495	31973595	1090746	0	-	0.38	(0.378,0.408]	chr2	116913	103	INTRON	INTRON	MEMO1:DPY30	ENSG00000162959.14:ENSG00000162961.14	ENST00000295065.9:ENST00000446765.5:ENST00000404530.6:ENST00000490459.5:ENST00000426310.6:ENST00000413686.1:ENST00000407893.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	111	2	3.16956	3.715345	4.26113	5.70211e-4	1.77623e-5	0.0220524	0.00320912
chr15	83505391	83505491	6082564	0	+	0.39	(0.378,0.408]	chr15	579050	141	INTRON	INTRON	SH3GL3	ENSG00000140600.17	ENST00000492099.1:ENST00000427482.7:ENST00000563901.5:ENST00000324537.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	38	2	3.1136	3.715295	4.31699	0.0250408	0.00443339	0.12011	0.061054
chr6	53334545	53334645	3108045	0	-	0.39	(0.378,0.408]	chr6	291049	385	INTRON	INTRON	ELOVL5	ENSG00000012660.14	ENST00000370918.8:ENST00000542638.5:ENST00000304434.11:ENST00000485336.5:ENST00000465983.5:ENST00000486973.1:ENST00000370913.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	38	2	3.1136	3.715295	4.31699	0.0250408	0.00443339	0.12011	0.061054
chr1	180792733	180792833	271205	0	+	0.36	(0.35,0.378]	chr1	31626	45	INTRON	INTRON	XPR1	ENSG00000143324.14	ENST00000367590.9:ENST00000367589.3	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	2.86451	3.715005	4.5655	0.0155464	0.0109111	0.100909	0.0923273
chr12	45245468	45245568	5120308	0	+	0.36	(0.35,0.378]	chr12	483127	168	INTRON	INTRON	ANO6	ENSG00000177119.17	ENST00000426898.2:ENST00000425752.6:ENST00000423947.7:ENST00000320560.13:ENST00000680498.1:ENST00000550630.5:ENST00000680201.1:ENST00000681156.1:ENST00000679761.1:ENST00000680371.1:ENST00000681817.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	38	2	2.86451	3.715005	4.5655	0.0155464	0.0109111	0.100909	0.0923273
chr3	72440298	72440397	1745858	0	-	0.434343	(0.408,0.44]	chr3	177368	598	INTRON	INTRON	RYBP	ENSG00000163602.12	ENST00000477973.5	protein_coding	protein_coding	protein_coding	protein_coding	7	237	2	3.54388	3.715005	3.88613	1.49092e-5	1.30263e-7	0.00310548	1.63182e-4
chrX	11340698	11340798	7760761	0	-	0.36	(0.35,0.378]	chrX	793522	49	INTRON	INTRON	ARHGAP6	ENSG00000047648.23	ENST00000380736.5:ENST00000337414.9:ENST00000495242.5:ENST00000489330.6:ENST00000380718.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	38	2	2.86451	3.715005	4.5655	0.0155464	0.0109111	0.100909	0.0923273
chr12	132800967	132801066	5449931	0	-	0.464646	(0.44,0.476]	chr12	522063	21	INTRON	INTRON	GOLGA3	ENSG00000090615.16	ENST00000204726.9:ENST00000450791.8:ENST00000693666.1:ENST00000688114.1:ENST00000687190.1:ENST00000690511.1:ENST00000685283.1:ENST00000691696.1:ENST00000691636.1:ENST00000690897.1:ENST00000690465.1:ENST00000456883.7:ENST00000692253.1:ENST00000687502.1:ENST00000688772.1:ENST00000687479.1:ENST00000690709.1:ENST00000545875.4:ENST00000688251.1:ENST00000690573.1:ENST00000685195.1:ENST00000686425.1:ENST00000693437.1:ENST00000692831.1:ENST00000688068.1:ENST00000692951.1:ENST00000689441.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	51	2	2.82351	3.7149900000000002	4.60647	0.0102339	0.00191049	0.0850389	0.0403772
chr6	17687895	17687995	3066023	0	-	0.47	(0.44,0.476]	chr6	284867	1	SS5_PROX	SS5_PROX:INTRON	NUP153	ENSG00000124789.12	ENST00000613258.4:ENST00000537253.5:ENST00000262077.3	protein_coding	protein_coding	protein_coding	protein_coding	2	49	2	2.0776	3.7149349999999997	5.35227	0.0292951	8.47974e-4	0.141862	0.0267232
chr1	224158137	224158234	321556	0	+	0.298969	(0.28,0.32]	chr1	37021	5	UTR3	UTR3:EXON_MRNA	FBXO28	ENSG00000143756.12	ENST00000366862.10:ENST00000424254.6:ENST00000523990.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	56	2	2.38391	3.71485	5.04579	0.0122525	0.00714672	0.0969406	0.0723634
chr5	94632932	94633031	2429057	0	+	0.50505	(0.476,0.515]	chr5	233388	18	INTRON	INTRON	SLF1	ENSG00000133302.13	ENST00000265140.10:ENST00000508130.5:ENST00000466957.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	40	2	2.99852	3.714725	4.43093	0.00931369	0.0077575	0.0855292	0.0757402
chr2	128106852	128106949	862630	0	+	0.443299	(0.44,0.476]	chr2	96674	25	INTRON	INTRON	UGGT1	ENSG00000136731.13	ENST00000259253.11:ENST00000430075.5:ENST00000438277.5:ENST00000376723.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	36	2	2.74372	3.7146800000000004	4.68564	0.0153007	0.00816201	0.108569	0.0766625
chr20	64031321	64031417	7301905	0	+	0.458333	(0.44,0.476]	chr20	743274	15	INTRON	INTRON	PRPF6	ENSG00000101161.8	ENST00000266079.5	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	2.74372	3.7146800000000004	4.68564	0.0153007	0.00816201	0.108569	0.0766625
chr1	61148826	61148926	128060	0	+	0.37	(0.35,0.378]	chr1	14778	159	INTRON	INTRON	NFIA	ENSG00000162599.17	ENST00000371191.5:ENST00000664495.1:ENST00000476646.5:ENST00000407417.7:ENST00000479364.1:ENST00000371189.8:ENST00000670151.1:ENST00000664149.1:ENST00000662015.1:ENST00000403491.8:ENST00000371187.7:ENST00000485903.6:ENST00000371185.6:ENST00000371184.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	38	2	2.57049	3.714595	4.8587	0.0262669	0.00695662	0.133676	0.0718189
chr1	182852624	182852714	273111	0	+	0.355556	(0.35,0.378]	chr1	31876	3	SS5_PROX	SS5_PROX:INTRON	DHX9	ENSG00000135829.17	ENST00000367549.4:ENST00000483416.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	38	2	2.57049	3.714595	4.8587	0.0262669	0.00695662	0.133676	0.0718189
chr17	59837854	59837930	6643711	0	+	0.368421	(0.35,0.378]	chr17	648781	1	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	VMP1	ENSG00000062716.13	ENST00000262291.9:ENST00000592619.5:ENST00000591877.1:ENST00000591782.1:ENST00000588617.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	38	2	2.57049	3.714595	4.8587	0.0262669	0.00695662	0.133676	0.0718189
chr4	88521293	88521392	2199571	0	-	0.363636	(0.35,0.378]	chr4	215837	4	UTR3	UTR3:EXON_MRNA	PYURF	ENSG00000145337.5	ENST00000273968.5	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	2.57049	3.714595	4.8587	0.0262669	0.00695662	0.133676	0.0718189
chr6	28226418	28226511	2839607	0	+	0.365591	(0.35,0.378]	chr6	266573	7	INTRON	INTRON	ZSCAN9	ENSG00000137185.13	ENST00000531941.1:ENST00000531981.5:ENST00000252207.10:ENST00000425468.6:ENST00000531979.5:ENST00000647743.1:ENST00000527436.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	38	2	2.57049	3.714595	4.8587	0.0262669	0.00695662	0.133676	0.0718189
chr1	174475244	174475344	260284	0	+	0.39	(0.378,0.408]	chr1	30824	258	INTRON	INTRON	RABGAP1L	ENSG00000152061.24	ENST00000357444.10:ENST00000251507.8:ENST00000681986.1:ENST00000367690.5:ENST00000526253.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	42	2	3.00568	3.714585	4.42349	0.00992961	0.00811866	0.0877296	0.0766625
chr18	21620228	21620327	6879232	0	+	0.434343	(0.408,0.44]	chr18	681836	74	INTRON	INTRON	SNRPD1	ENSG00000167088.11	ENST00000300413.10:ENST00000579618.1:ENST00000582475.1	protein_coding	protein_coding	protein_coding	protein_coding	1	40	2	2.89795	3.714415	4.53088	0.0110735	0.00669275	0.0873897	0.0738715
chr2	174170689	174170789	1270074	0	-	0.42	(0.408,0.44]	chr2	134282	283	INTRON	INTRON	OLA1	ENSG00000138430.16	ENST00000284719.8:ENST00000344357.9:ENST00000428402.6:ENST00000409546.5:ENST00000429575.1	protein_coding	protein_coding	protein_coding	protein_coding	1	40	2	2.89795	3.714415	4.53088	0.0110735	0.00669275	0.0873897	0.0738715
chr21	33461595	33461693	7440792	0	-	0.5	(0.476,0.515]	chr21	759350	7	INTRON	INTRON	TMEM50B	ENSG00000142188.17	ENST00000420455.5:ENST00000542230.7:ENST00000441128.5:ENST00000442441.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	59	2	2.3346	3.714415	5.09423	0.00494807	0.00204588	0.0646039	0.04086
chr3	12651577	12651676	1617307	0	-	0.50505	(0.476,0.515]	chr3	166996	21	INTRON	INTRON	RAF1	ENSG00000132155.14	ENST00000688543.1:ENST00000685348.1:ENST00000251849.9:ENST00000442415.7:ENST00000688444.1:ENST00000692093.1:ENST00000691724.1:ENST00000423275.6:ENST00000687326.1:ENST00000688803.1:ENST00000689876.1:ENST00000686455.1:ENST00000684903.1:ENST00000693312.1:ENST00000690460.1:ENST00000692773.1:ENST00000688625.1:ENST00000693664.1:ENST00000686762.1:ENST00000692311.1:ENST00000692558.1:ENST00000691779.1:ENST00000685738.1:ENST00000690397.1:ENST00000687923.1:ENST00000688269.1:ENST00000693705.1:ENST00000689097.1:ENST00000691899.1:ENST00000689914.1:ENST00000690625.1:ENST00000689389.1:ENST00000687257.1:ENST00000686409.1:ENST00000685653.1:ENST00000689540.1:ENST00000691396.1:ENST00000685437.1:ENST00000689418.1:ENST00000687940.1:ENST00000689481.1:ENST00000491290.2:ENST00000686479.1:ENST00000689033.1:ENST00000692777.1:ENST00000689226.1:ENST00000691718.1:ENST00000692959.1:ENST00000685740.1:ENST00000688753.1:ENST00000688779.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	146	2	2.6784	3.714415	4.75043	5.61257e-4	7.32041e-7	0.021915	4.77393e-4
chr7	149615403	149615503	3672530	0	-	0.43	(0.408,0.44]	chr7	340834	514	INTRON	INTRON	ZNF767P	ENSG00000133624.14	ENST00000463567.5:ENST00000472212.5:ENST00000684939.1:ENST00000690388.1:ENST00000486492.5:ENST00000481762.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	1	40	2	2.89795	3.714415	4.53088	0.0110735	0.00669275	0.0873897	0.0738715
chr10	42550356	42550456	4603831	0	-	0.38	(0.378,0.408]	chr10	424115	4	SS5_PROX	SS5_PROX:INTRON	ZNF37BP	ENSG00000234420.8	ENST00000452075.7:ENST00000692055.1:ENST00000689225.1:ENST00000686311.1:ENST00000686673.1:ENST00000688789.1:ENST00000690905.1:ENST00000435805.7:ENST00000687308.1:ENST00000692559.1:ENST00000690442.1:ENST00000473592.1:ENST00000691808.1:ENST00000692594.1:ENST00000691366.1:ENST00000689409.1:ENST00000685241.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	1	38	2	2.36428	3.7142	5.06412	0.0441088	0.0030522	0.162255	0.0493883
chrX	41336082	41336156	7645663	0	+	0.378378	(0.378,0.408]	chrX	782486	1	UTR5	UTR5:EXON_MRNA:INTRON	DDX3X	ENSG00000215301.11	ENST00000625837.2:ENST00000626301.2:ENST00000629785.2:ENST00000630255.2:ENST00000630370.2:ENST00000630858.2:ENST00000629496.3:ENST00000610559.5:ENST00000611546.2:ENST00000478993.5:ENST00000457138.7:ENST00000643821.1:ENST00000644876.2:ENST00000399959.7:ENST00000644074.1:ENST00000645338.1:ENST00000646196.1:ENST00000642793.1:ENST00000646940.1:ENST00000644307.1:ENST00000645561.1:ENST00000645080.1:ENST00000642597.1:ENST00000642722.1:ENST00000644109.1:ENST00000644958.1:ENST00000646122.1:ENST00000644513.1:ENST00000645589.1:ENST00000441189.4:ENST00000646822.1:ENST00000631641.2:ENST00000615742.4:ENST00000647219.1:ENST00000480592.6:ENST00000646223.1:ENST00000643963.1:ENST00000646319.1:ENST00000645783.1:ENST00000642624.1:ENST00000542215.5:ENST00000644073.1:ENST00000644677.1:ENST00000615313.5:ENST00000622373.1:ENST00000642322.1:ENST00000622198.5:ENST00000645120.1:ENST00000646107.1:ENST00000646627.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	38	2	2.36428	3.7142	5.06412	0.0441088	0.0030522	0.162255	0.0493883
chr18	1165685	1165784	6857502	0	+	0.313131	(0.28,0.32]	chr18	679671	1	INTRON	INTRON	ENSG00000263551	ENSG00000263551.6	ENST00000580781.5:ENST00000670380.1:ENST00000667797.1:ENST00000583497.1	lncRNA	lncRNA	lncRNA	lncRNA	1	42	2	2.91832	3.7140649999999997	4.50981	0.0275554	0.0102484	0.123904	0.089002
chr5	18992118	18992217	2568983	0	-	0.282828	(0.28,0.32]	chr5	246196	255	INTRON	INTRON	ENSG00000249174	ENSG00000249174.1	ENST00000504827.1	lncRNA	lncRNA	lncRNA	lncRNA	1	42	2	2.91832	3.7140649999999997	4.50981	0.0275554	0.0102484	0.123904	0.089002
chr9	92273639	92273734	4287139	0	-	0.315789	(0.28,0.32]	chr9	394223	14	INTRON	INTRON	IARS1	ENSG00000196305.19	ENST00000375643.7:ENST00000443024.7:ENST00000447699.7:ENST00000683537.1:ENST00000684726.1:ENST00000683192.1:ENST00000683565.1:ENST00000682756.1:ENST00000684542.1:ENST00000683793.1:ENST00000683817.1:ENST00000682141.1:ENST00000682893.1:ENST00000684557.1:ENST00000498025.2:ENST00000682156.1:ENST00000627121.3:ENST00000683469.1:ENST00000683495.1:ENST00000682578.1:ENST00000682533.1:ENST00000472894.2:ENST00000684757.1:ENST00000684445.1:ENST00000683376.1:ENST00000683679.1:ENST00000683119.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	42	2	2.91832	3.7140649999999997	4.50981	0.0275554	0.0102484	0.123904	0.089002
chr9	112266559	112266658	4317286	0	-	0.292929	(0.28,0.32]	chr9	397060	36	INTRON	INTRON	PTBP3	ENSG00000119314.16	ENST00000334318.10:ENST00000458258.5:ENST00000374257.6:ENST00000374255.6:ENST00000343327.6:ENST00000487997.1:ENST00000210227.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	42	2	2.91832	3.7140649999999997	4.50981	0.0275554	0.0102484	0.123904	0.089002
chr2	113919891	113919990	854545	0	+	0.424242	(0.408,0.44]	chr2	95910	25	INTRON	INTRON	ACTR3	ENSG00000115091.12	ENST00000443297.5:ENST00000263238.7:ENST00000415792.5:ENST00000446821.5:ENST00000535589.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	81	2	1.77749	3.713995	5.6505	0.0104439	2.70553e-4	0.0902734	0.0150813
chr20	47312590	47312690	7349069	0	-	0.47	(0.44,0.476]	chr20	749342	20	INTRON	INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000468376.2:ENST00000435836.5:ENST00000446894.5:ENST00000441977.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	58	2	2.1762	3.7139949999999997	5.25179	0.0092251	0.00124521	0.0855292	0.0322969
chr6	157855564	157855664	3016086	0	+	0.25	[0,0.28]	chr6	281353	255	INTRON	INTRON	SNX9	ENSG00000130340.17	ENST00000614703.4:ENST00000614800.4:ENST00000680863.1:ENST00000679814.1:ENST00000680464.1:ENST00000681186.1:ENST00000679732.1:ENST00000681183.1:ENST00000681534.1:ENST00000681651.1:ENST00000680089.1:ENST00000680078.1:ENST00000680974.1:ENST00000680095.1:ENST00000680015.1:ENST00000681138.1:ENST00000392185.8:ENST00000679790.1:ENST00000680495.1:ENST00000679691.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	73	2	1.99345	3.713865	5.43428	0.0211881	0.00400834	0.123133	0.0551303
chr22	20472214	20472313	7557283	0	-	0.373737	(0.35,0.378]	chr22	772788	3	INTRON	INTRON	KLHL22	ENSG00000099910.17	ENST00000328879.9:ENST00000479601.5:ENST00000451553.1:ENST00000444967.5:ENST00000458248.5:ENST00000443285.5:ENST00000494929.5:ENST00000431430.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	41	2	2.39939	3.7138549999999997	5.02832	0.0458078	0.00156444	0.149888	0.0365263
chr12	118381922	118382021	5234453	0	+	0.414141	(0.408,0.44]	chr12	496607	13	INTRON	INTRON	SUDS3	ENSG00000111707.12	ENST00000543473.2	protein_coding	protein_coding	protein_coding	protein_coding	3	58	2	2.13157	3.713845	5.29612	0.0109031	0.00113523	0.0923273	0.0307488
chr6	35902188	35902287	3088636	0	-	0.434343	(0.408,0.44]	chr6	288891	66	INTRON	INTRON	SRPK1	ENSG00000096063.16	ENST00000373825.7:ENST00000423325.6:ENST00000346162.10:ENST00000361690.7:ENST00000510290.5:ENST00000508473.5:ENST00000512445.5:ENST00000513367.1:ENST00000507909.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	58	2	2.03431	3.713755	5.3932	0.0154896	7.81492e-4	0.108998	0.0257168
chr1	108950834	108950933	519050	0	-	0.272727	[0,0.28]	chr1	60921	5	UTR5	UTR5:EXON_MRNA:SS3_PROX:INTRON	CLCC1	ENSG00000121940.17	ENST00000690509.1:ENST00000687328.1:ENST00000685014.1:ENST00000685540.1:ENST00000686576.1:ENST00000688070.1:ENST00000691513.1:ENST00000686821.1:ENST00000692511.1:ENST00000689479.1:ENST00000687646.1:ENST00000687998.1:ENST00000687226.1:ENST00000693336.1:ENST00000689991.1:ENST00000687591.1:ENST00000691777.1:ENST00000690756.1:ENST00000688778.1:ENST00000685104.1:ENST00000689103.1:ENST00000687734.1:ENST00000686434.1:ENST00000685497.1:ENST00000691342.1:ENST00000686776.1:ENST00000692342.1:ENST00000689351.1:ENST00000692584.1:ENST00000692775.1:ENST00000687134.1:ENST00000675018.1:ENST00000690781.1:ENST00000691556.1:ENST00000689189.1:ENST00000687099.1:ENST00000685791.1:ENST00000687865.1:ENST00000687449.1:ENST00000688285.1:ENST00000686817.1:ENST00000369968.7:ENST00000674992.1:ENST00000675001.1:ENST00000369969.7:ENST00000356970.6:ENST00000688610.1:ENST00000675128.1:ENST00000693089.1:ENST00000675571.1:ENST00000675650.1:ENST00000369970.8:ENST00000674561.2:ENST00000675451.1:ENST00000675654.1:ENST00000675790.1:ENST00000675584.1:ENST00000692795.1:ENST00000691731.1:ENST00000689359.1:ENST00000676392.2:ENST00000676391.2:ENST00000676454.1:ENST00000674849.1:ENST00000675956.1:ENST00000302500.5:ENST00000675508.1:ENST00000688168.1:ENST00000693673.1:ENST00000692404.1:ENST00000686078.1:ENST00000690874.1:ENST00000692732.1:ENST00000685628.1:ENST00000676306.1:ENST00000676059.2:ENST00000674527.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	233	2	2.95067	3.713735	4.4768	9.76112e-5	4.66877e-5	0.00830626	0.00593131
chr7	128622887	128622980	3408283	0	+	0.408602	(0.408,0.44]	chr7	318399	2	SS5_PROX	SS5_PROX:INTRON	ENSG00000242588	ENSG00000242588.6	ENST00000605862.5	lncRNA	lncRNA	lncRNA	lncRNA	2	81	2	3.63785	3.71361	3.78937	4.70012e-4	3.51772e-4	0.0196294	0.0174637
chr1	109404472	109404571	521080	0	-	0.393939	(0.378,0.408]	chr1	61220	20	INTRON	INTRON	PSMA5	ENSG00000143106.13	ENST00000271308.9:ENST00000490870.5:ENST00000538610.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	37	2	2.92665	3.7136050000000003	4.50056	0.015974	0.0086017	0.101453	0.083729
chr2	70219481	70219580	1152164	0	-	0.383838	(0.378,0.408]	chr2	123065	21	INTRON	INTRON	C2orf42:TIA1	ENSG00000115998.8:ENSG00000116001.17	ENST00000470096.1:ENST00000415783.6:ENST00000433529.7:ENST00000282574.8:ENST00000445587.5:ENST00000454815.6:ENST00000482876.5:ENST00000477415.5:ENST00000496096.5:ENST00000416149.6:ENST00000474699.1:ENST00000474809.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	37	2	2.92665	3.7136050000000003	4.50056	0.015974	0.0086017	0.101453	0.083729
chr2	208293778	208293877	992281	0	+	0.393939	(0.378,0.408]	chr2	106630	46	INTRON	INTRON	PIKFYVE	ENSG00000115020.17	ENST00000264380.9:ENST00000443896.5:ENST00000392202.7:ENST00000407449.5:ENST00000308862.10:ENST00000452564.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	37	2	2.92665	3.7136050000000003	4.50056	0.015974	0.0086017	0.101453	0.083729
chr3	180946767	180946866	1568951	0	+	0.40404	(0.378,0.408]	chr3	162382	112	INTRON	INTRON	FXR1	ENSG00000114416.18	ENST00000469882.5:ENST00000484790.5:ENST00000465551.5:ENST00000305586.11:ENST00000475315.5:ENST00000357559.9:ENST00000468861.5:ENST00000491062.5:ENST00000479176.5:ENST00000445140.6:ENST00000472339.5:ENST00000484958.5:ENST00000480918.5:ENST00000484042.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	37	2	2.92665	3.7136050000000003	4.50056	0.015974	0.0086017	0.101453	0.083729
chr12	120139629	120139720	5432653	0	-	0.362637	(0.35,0.378]	chr12	519126	4	INTRON	INTRON	GCN1	ENSG00000089154.11	ENST00000300648.7	protein_coding	protein_coding	protein_coding	protein_coding	1	41	2	2.60341	3.71359	4.82377	0.0275785	0.00325499	0.123904	0.0524329
chr11	47742860	47742958	4951161	0	-	0.306122	(0.28,0.32]	chr11	464412	58	INTRON	INTRON	FNBP4	ENSG00000109920.13	ENST00000263773.10:ENST00000528388.5:ENST00000534003.5:ENST00000527894.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	42	2	2.38101	3.7134	5.04579	0.0456017	0.00714672	0.164236	0.0723634
chr19	21844310	21844406	7159717	0	-	0.3125	(0.28,0.32]	chr19	723798	6	INTRON	INTRON	ZNF43	ENSG00000198521.12	ENST00000357491.10:ENST00000594012.5:ENST00000595461.5:ENST00000598381.5:ENST00000596899.1:ENST00000599414.5:ENST00000594312.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	42	2	2.38101	3.7134	5.04579	0.0456017	0.00714672	0.164236	0.0723634
chr4	78876259	78876357	1982404	0	+	0.408163	(0.378,0.408]	chr4	198546	31	INTRON	INTRON	BMP2K	ENSG00000138756.19	ENST00000389010.7:ENST00000502613.3:ENST00000502871.5:ENST00000507670.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	113	2	3.1215	3.71333	4.30516	4.84777e-4	2.97737e-5	0.0199443	0.00452621
chr9	34008534	34008634	4245441	0	-	0.44	(0.408,0.44]	chr9	390473	93	INTRON	INTRON	UBAP2	ENSG00000137073.24	ENST00000379238.7:ENST00000683659.1:ENST00000682239.1:ENST00000683140.1:ENST00000682209.1:ENST00000681980.1:ENST00000360802.6:ENST00000683252.1:ENST00000684158.1:ENST00000682914.1:ENST00000683717.1:ENST00000379239.9:ENST00000683084.1:ENST00000684754.1:ENST00000629575.2:ENST00000684298.1:ENST00000412543.6:ENST00000480885.5:ENST00000459988.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	53	2	1.88062	3.713115	5.54561	0.0534548	1.20601e-4	0.162935	0.00938389
chr2	110643483	110643582	1206502	0	-	0.373737	(0.35,0.378]	chr2	128640	8	INTRON	INTRON	BUB1	ENSG00000169679.15	ENST00000302759.11:ENST00000535254.6:ENST00000409311.5:ENST00000671097.1:ENST00000466333.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	78	2	1.55918	3.7130799999999997	5.86698	0.0326427	1.76496e-4	0.145164	0.01216
chr11	9312851	9312948	4909420	0	-	0.391753	(0.378,0.408]	chr11	460164	13	INTRON	INTRON	TMEM41B	ENSG00000166471.11	ENST00000524543.5:ENST00000528080.6:ENST00000299596.8:ENST00000611268.4:ENST00000527813.5:ENST00000533723.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	37	2	2.54849	3.713055	4.87762	0.0273196	0.00553849	0.136494	0.0648867
chr16	90030079	90030179	6423719	0	+	0.4	(0.378,0.408]	chr16	617098	4	SS5_PROX	SS5_PROX:INTRON	GAS8	ENSG00000141013.17	ENST00000563980.5:ENST00000565957.5:ENST00000536122.7:ENST00000568705.5:ENST00000568664.5:ENST00000561675.1:ENST00000564392.5:ENST00000620723.4:ENST00000565062.5:ENST00000540721.5:ENST00000268699.9:ENST00000566266.5:ENST00000537797.5:ENST00000569558.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	37	2	2.54849	3.713055	4.87762	0.0273196	0.00553849	0.136494	0.0648867
chr18	31906168	31906267	6961020	0	-	0.383838	(0.378,0.408]	chr18	688740	48	INTRON	INTRON	TRAPPC8	ENSG00000153339.15	ENST00000283351.10:ENST00000580104.5:ENST00000582539.5:ENST00000582513.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	37	2	2.54849	3.713055	4.87762	0.0273196	0.00553849	0.136494	0.0648867
chr7	29664213	29664313	3511602	0	-	0.38	(0.378,0.408]	chr7	327367	125	INTRON	INTRON	ZNRF2P2	ENSG00000225264.3	ENST00000442865.1:ENST00000426767.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	1	37	2	2.54849	3.713055	4.87762	0.0273196	0.00553849	0.136494	0.0648867
chr6	15518468	15518568	2825692	0	+	0.56	(0.515,0.57]	chr6	265286	8	INTRON	INTRON	JARID2	ENSG00000008083.14	ENST00000341776.7:ENST00000397311.4	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	3.25547	3.71292	4.17037	0.0139194	0.00261721	0.10247	0.0455413
chr10	92609709	92609809	4490849	0	+	0.4	(0.378,0.408]	chr10	413563	2	SS5_PROX	SS5_PROX:INTRON	KIF11	ENSG00000138160.7	ENST00000676757.1:ENST00000676647.1:ENST00000260731.5:ENST00000676621.1:ENST00000677720.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	110	2	3.36411	3.71272	4.06133	1.36472e-4	1.0488e-4	0.010058	0.00920724
chr19	16839284	16839383	7027466	0	+	0.444444	(0.44,0.476]	chr19	699470	73	INTRON	INTRON	SIN3B	ENSG00000127511.10	ENST00000248054.10:ENST00000379803.5:ENST00000596802.5	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	2.81896	3.712715	4.60647	0.0120766	0.0102339	0.0962311	0.0850389
chr6	57951599	57951698	3115178	0	-	0.444444	(0.44,0.476]	chr6	291834	12	INTRON	INTRON	LINC00680	ENSG00000215190.9	ENST00000450081.5:ENST00000399751.6:ENST00000418368.1:ENST00000418765.6	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	1	36	2	2.81896	3.712715	4.60647	0.0120766	0.0102339	0.0962311	0.0850389
chr7	39777872	39777972	3310456	0	+	0.46	(0.44,0.476]	chr7	307432	64	INTRON	INTRON	LINC00265	ENSG00000188185.13	ENST00000656108.1:ENST00000666283.1:ENST00000674829.1:ENST00000675279.1:ENST00000675949.1:ENST00000340510.8:ENST00000656391.1:ENST00000658784.1	lncRNA	lncRNA	lncRNA	lncRNA	1	36	2	2.81896	3.712715	4.60647	0.0120766	0.0102339	0.0962311	0.0850389
chr7	108516834	108516929	3614555	0	-	0.463158	(0.44,0.476]	chr7	337008	9	INTRON	INTRON	PNPLA8	ENSG00000135241.17	ENST00000257694.13:ENST00000426128.6:ENST00000453144.5:ENST00000422087.5:ENST00000436062.5:ENST00000453085.1:ENST00000483879.5:ENST00000476592.5:ENST00000489738.1:ENST00000427008.1:ENST00000415498.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	36	2	2.81896	3.712715	4.60647	0.0120766	0.0102339	0.0962311	0.0850389
chr10	130167867	130167964	4536650	0	+	0.494845	(0.476,0.515]	chr10	418810	5	INTRON	INTRON	GLRX3	ENSG00000108010.12	ENST00000331244.10:ENST00000481034.1:ENST00000368644.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	36	2	2.73205	3.712625	4.6932	0.0159328	0.00753088	0.109464	0.074841
chr17	35601865	35601963	6599683	0	+	0.510204	(0.476,0.515]	chr17	642245	4	INTRON	INTRON	AP2B1	ENSG00000006125.18	ENST00000589774.5:ENST00000616784.4:ENST00000621914.4:ENST00000620039.4:ENST00000616681.4:ENST00000621668.4:ENST00000610402.5:ENST00000612035.4:ENST00000591610.5:ENST00000590538.5:ENST00000614600.4:ENST00000590432.5:ENST00000612116.5:ENST00000618940.4:ENST00000592167.5:ENST00000593014.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	36	2	2.73205	3.712625	4.6932	0.0159328	0.00753088	0.109464	0.074841
chr6	7297517	7297613	3053230	0	-	0.479167	(0.476,0.515]	chr6	283952	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SSR1	ENSG00000124783.14	ENST00000474597.5:ENST00000650389.1:ENST00000244763.9:ENST00000397511.6:ENST00000489567.5:ENST00000479365.5:ENST00000479485.5:ENST00000462112.1	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	2.73205	3.712625	4.6932	0.0159328	0.00753088	0.109464	0.074841
chr7	5744896	5744996	3474599	0	-	0.48	(0.476,0.515]	chr7	324892	27	INTRON	INTRON	RNF216	ENSG00000011275.19	ENST00000425013.6:ENST00000389902.8:ENST00000389900.8:ENST00000411812.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	36	2	2.73205	3.712625	4.6932	0.0159328	0.00753088	0.109464	0.074841
chr7	102176683	102176782	3369972	0	+	0.484848	(0.476,0.515]	chr7	315286	58	INTRON	INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000560541.5:ENST00000558836.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	36	2	2.73205	3.712625	4.6932	0.0159328	0.00753088	0.109464	0.074841
chr9	136464962	136465062	4374852	0	-	0.51	(0.476,0.515]	chr9	403058	4	SS3_PROX	SS3_PROX:INTRON	SEC16A	ENSG00000148396.19	ENST00000290037.10:ENST00000313050.11:ENST00000371706.8:ENST00000453963.5:ENST00000684901.1:ENST00000690691.1:ENST00000431893.3:ENST00000472305.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	36	2	2.73205	3.712625	4.6932	0.0159328	0.00753088	0.109464	0.074841
chr1	88785124	88785224	156784	0	+	0.44	(0.408,0.44]	chr1	17076	3	SS5_PROX	SS5_PROX:INTRON	PKN2	ENSG00000065243.20	ENST00000316005.11:ENST00000370521.8:ENST00000370513.9:ENST00000436111.1	protein_coding	protein_coding	protein_coding	protein_coding	2	80	2	3.62972	3.71253	3.79534	7.19047e-4	2.17043e-4	0.0246202	0.0129235
chr3	49404216	49404316	1693985	0	-	0.47	(0.44,0.476]	chr3	173707	283	INTRON	INTRON	RHOA	ENSG00000067560.14	ENST00000678200.1:ENST00000422781.6:ENST00000676712.2:ENST00000678921.2:ENST00000445425.6:ENST00000454011.7:ENST00000418115.6:ENST00000679208.1:ENST00000677684.1:ENST00000431929.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	36	2	2.66433	3.712505	4.76068	0.0194358	0.00653414	0.119831	0.0699952
chr6	157404254	157404354	3011773	0	+	0.51	(0.476,0.515]	chr6	281268	216	INTRON	INTRON	ZDHHC14	ENSG00000175048.17	ENST00000414563.6:ENST00000359775.10	protein_coding	protein_coding	protein_coding	protein_coding	3	62	2	1.93059	3.712465	5.49434	0.023762	1.62782e-4	0.118822	0.0109774
chr11	110262931	110263031	5040991	0	-	0.47	(0.44,0.476]	chr11	474714	2	SS5_PROX	SS5_PROX:INTRON	RDX	ENSG00000137710.17	ENST00000645527.1:ENST00000530749.5:ENST00000528498.5:ENST00000528900.5:ENST00000530301.5:ENST00000647231.1:ENST00000646663.1:ENST00000645495.2:ENST00000544551.5:ENST00000530131.5:ENST00000534683.1:ENST00000642511.1:ENST00000532118.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	37	2	3.08591	3.71245	4.33899	0.0206616	0.00481262	0.110999	0.0638089
chr15	76943971	76944071	6066257	0	+	0.45	(0.44,0.476]	chr15	577728	1	SS5_PROX	SS5_PROX:INTRON	RCN2	ENSG00000117906.14	ENST00000320963.9:ENST00000394885.8:ENST00000394883.3:ENST00000557805.1:ENST00000558598.1:ENST00000560833.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	37	2	3.08591	3.71245	4.33899	0.0206616	0.00481262	0.110999	0.0638089
chr9	19075904	19076002	4236324	0	-	0.459184	(0.44,0.476]	chr9	389376	53	INTRON	INTRON	HAUS6	ENSG00000147874.11	ENST00000380502.8:ENST00000380496.5	protein_coding	protein_coding	protein_coding	protein_coding	1	37	2	3.08591	3.71245	4.33899	0.0206616	0.00481262	0.110999	0.0638089
chr3	183749795	183749894	1580817	0	+	0.393939	(0.378,0.408]	chr3	163068	17	INTRON	INTRON	YEATS2	ENSG00000163872.16	ENST00000305135.10	protein_coding	protein_coding	protein_coding	protein_coding	1	43	2	3.10274	3.71224	4.32174	0.0132362	0.00586642	0.0999551	0.0668095
chr15	82368063	82368163	6075661	0	+	0.35	(0.32,0.35]	chr15	578727	123	INTRON	INTRON	UBE2Q2P2	ENSG00000259429.5	ENST00000618775.4	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	2	53	2	2.4053	3.7122349999999997	5.01917	0.0108284	0.0055659	0.0920575	0.0648867
chr16	89389384	89389484	6542579	0	-	0.33	(0.32,0.35]	chr16	634240	159	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000647238.1:ENST00000644045.1:ENST00000643147.1:ENST00000644139.1:ENST00000568512.6:ENST00000566973.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	53	2	2.4053	3.7122349999999997	5.01917	0.0108284	0.0055659	0.0920575	0.0648867
chr4	110186156	110186256	2227610	0	-	0.37	(0.35,0.378]	chr4	218024	802	INTRON	INTRON	ELOVL6	ENSG00000170522.10	ENST00000394607.7:ENST00000302274.8:ENST00000514184.5:ENST00000506625.5:ENST00000506461.1:ENST00000503885.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	138	2	3.1438	3.712155	4.28051	9.93672e-5	3.99553e-5	0.00838841	0.00539487
chr1	155726970	155727038	229902	0	+	0.367647	(0.35,0.378]	chr1	27034	3	EXON_LNCRNA	EXON_LNCRNA:INTRON	DAP3	ENSG00000132676.16	ENST00000471642.6:ENST00000471214.5:ENST00000343043.7:ENST00000368336.10:ENST00000535183.5:ENST00000421487.6:ENST00000496863.5:ENST00000470830.5:ENST00000497826.5:ENST00000463575.5:ENST00000479151.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	94	2	3.26794	3.712135	4.15633	0.00257067	7.52029e-5	0.0466761	0.00777227
chr4	2560236	2560335	1912752	0	+	0.535354	(0.515,0.57]	chr4	191976	227	INTRON	INTRON	RNF4:FAM193A	ENSG00000063978.16:ENSG00000125386.16	ENST00000508235.1:ENST00000637812.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	44	2	2.26012	3.7121250000000003	5.16413	0.0160033	8.14815e-4	0.109464	0.0263656
chr17	37295298	37295397	6761927	0	-	0.434343	(0.408,0.44]	chr17	664939	54	INTRON	INTRON	ACACA	ENSG00000278540.5	ENST00000616317.5:ENST00000614428.4:ENST00000612895.4:ENST00000617649.4:ENST00000613146.4:ENST00000615229.4:ENST00000621960.1:ENST00000617548.1:ENST00000616352.4:ENST00000614789.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	39	2	2.36073	3.7120800000000003	5.06343	0.0481658	0.00101725	0.153019	0.0293497
chr1	100980757	100980857	175194	0	+	0.42	(0.408,0.44]	chr1	18985	60	UTR3	UTR3:EXON_MRNA	SLC30A7	ENSG00000162695.12	ENST00000370112.8:ENST00000357650.9	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	2.74518	3.71206	4.67894	0.0152229	0.0087648	0.108535	0.0788605
chr10	72760150	72760250	4450777	0	+	0.43	(0.408,0.44]	chr10	410763	2	SS3_PROX	SS3_PROX:INTRON	MCU	ENSG00000156026.15	ENST00000373053.8:ENST00000357157.10:ENST00000604679.5:ENST00000604372.5:ENST00000603649.5:ENST00000605597.5:ENST00000536019.5:ENST00000604152.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	36	2	2.74518	3.71206	4.67894	0.0152229	0.0087648	0.108535	0.0788605
chr11	3881615	3881715	4723723	0	+	0.44	(0.408,0.44]	chr11	437130	130	INTRON	INTRON	STIM1	ENSG00000167323.12	ENST00000525403.5:ENST00000526596.2:ENST00000300737.8:ENST00000616714.4:ENST00000527651.5:ENST00000532610.5:ENST00000532919.5:ENST00000530554.5	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	2.74518	3.71206	4.67894	0.0152229	0.0087648	0.108535	0.0788605
chr16	74598069	74598168	6525242	0	-	0.414141	(0.408,0.44]	chr16	631842	349	INTRON	INTRON	GLG1	ENSG00000090863.12	ENST00000205061.9:ENST00000422840.7:ENST00000447066.6:ENST00000562090.5:ENST00000567951.5:ENST00000627032.2:ENST00000565260.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	36	2	2.74518	3.71206	4.67894	0.0152229	0.0087648	0.108535	0.0788605
chr5	32418192	32418292	2599061	0	-	0.44	(0.408,0.44]	chr5	246958	4	SS3_PROX	SS3_PROX:INTRON	ZFR	ENSG00000056097.16	ENST00000265069.13:ENST00000505366.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	36	2	2.74518	3.71206	4.67894	0.0152229	0.0087648	0.108535	0.0788605
chr14	37062088	37062188	5876908	0	-	0.27	[0,0.28]	chr14	558013	1867	INTRON	INTRON	SLC25A21	ENSG00000183032.12	ENST00000331299.6:ENST00000555449.5:ENST00000557611.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	45	2	2.36637	3.711925	5.05748	0.0500615	0.0113653	0.17488	0.0886611
chr16	68129310	68129410	6370666	0	+	0.27	[0,0.28]	chr16	612201	23	INTRON	INTRON	NFATC3	ENSG00000072736.19	ENST00000563319.5:ENST00000569766.5:ENST00000553077.5:ENST00000566301.5:ENST00000549350.5:ENST00000566893.5:ENST00000575270.5:ENST00000561714.5:ENST00000346183.8:ENST00000568466.6:ENST00000539828.6:ENST00000562171.1:ENST00000349223.9:ENST00000329524.8:ENST00000379165.8:ENST00000562926.5:ENST00000570212.5:ENST00000563796.5:ENST00000567152.5:ENST00000563288.5:ENST00000535127.2:ENST00000565750.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	45	2	2.36637	3.711925	5.05748	0.0500615	0.0113653	0.17488	0.0886611
chr12	120198205	120198281	5433280	0	-	0.5	(0.476,0.515]	chr12	519353	3	SS5_PROX	SS5_PROX:INTRON	RPLP0	ENSG00000089157.16	ENST00000392514.9:ENST00000551150.5:ENST00000546989.5:ENST00000313104.9:ENST00000228306.8:ENST00000552461.5:ENST00000549098.5:ENST00000551258.5:ENST00000546990.5:ENST00000547211.5:ENST00000547475.5:ENST00000547173.5:ENST00000550856.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	343	2	3.60086	3.7119	3.82294	1.16834e-6	8.97584e-8	6.23613e-4	1.31087e-4
chr2	60797455	60797554	785567	0	+	0.333333	(0.32,0.35]	chr2	88376	4	UTR3	UTR3:EXON_MRNA	PAPOLG	ENSG00000115421.13	ENST00000496283.5:ENST00000414060.5:ENST00000238714.8:ENST00000453839.5:ENST00000412217.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	40	2	2.96746	3.711875	4.45629	0.0246089	0.00815799	0.12011	0.0810802
chr7	23409376	23409476	3503052	0	-	0.33	(0.32,0.35]	chr7	326892	39	INTRON	INTRON	IGF2BP3	ENSG00000136231.14	ENST00000258729.8:ENST00000421467.6:ENST00000468263.5:ENST00000479504.5:ENST00000466809.6:ENST00000491719.5:ENST00000465058.5:ENST00000469723.5:ENST00000476938.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	40	2	2.96746	3.711875	4.45629	0.0246089	0.00815799	0.12011	0.0810802
chr8	92819745	92819844	3990303	0	-	0.343434	(0.32,0.35]	chr8	365358	333	INTRON	INTRON	FLJ46284	ENSG00000248858.7	ENST00000504861.2	lncRNA	lncRNA	lncRNA	lncRNA	1	40	2	2.96746	3.711875	4.45629	0.0246089	0.00815799	0.12011	0.0810802
chr9	132326323	132326422	4366873	0	-	0.333333	(0.32,0.35]	chr9	401465	1	CDS	CDS:EXON_MRNA	SETX	ENSG00000107290.14	ENST00000224140.6	protein_coding	protein_coding	protein_coding	protein_coding	1	40	2	2.96746	3.711875	4.45629	0.0246089	0.00815799	0.12011	0.0810802
chr12	64443086	64443185	5153296	0	+	0.484848	(0.476,0.515]	chr12	487839	34	INTRON	INTRON	XPOT	ENSG00000184575.12	ENST00000332707.10	protein_coding	protein_coding	protein_coding	protein_coding	3	60	2	2.45107	3.7118	4.97253	0.00311573	0.00301722	0.0507519	0.0498063
chr19	34455737	34455834	7053404	0	+	0.484536	(0.476,0.515]	chr19	703551	8	INTRON	INTRON	UBA2	ENSG00000126261.13	ENST00000586313.1:ENST00000246548.9:ENST00000439527.6:ENST00000591016.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	60	2	2.45107	3.7118	4.97253	0.00311573	0.00301722	0.0507519	0.0498063
chr16	24788631	24788731	6329809	0	+	0.46	(0.44,0.476]	chr16	605958	98	INTRON	INTRON	TNRC6A	ENSG00000090905.19	ENST00000395799.8:ENST00000315183.11:ENST00000491718.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	39	2	2.29842	3.7117750000000003	5.12513	0.0552483	7.96486e-4	0.165463	0.0258804
chr22	20757340	20757439	7558643	0	-	0.40404	(0.378,0.408]	chr22	773092	38	INTRON	INTRON	PI4KA	ENSG00000241973.11	ENST00000255882.11:ENST00000466162.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	226	2	2.82388	3.711665	4.59945	1.55391e-4	3.67365e-8	0.0113474	7.67655e-5
chr19	52882977	52883076	7208729	0	-	0.272727	[0,0.28]	chr19	731657	6	INTRON	INTRON	ZNF320	ENSG00000182986.15	ENST00000673631.1:ENST00000594408.3:ENST00000391781.6:ENST00000600930.1:ENST00000682928.1:ENST00000595635.5:ENST00000597091.5:ENST00000593618.5:ENST00000594741.5:ENST00000597265.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	49	2	2.38757	3.711625	5.03568	0.0552962	0.00446141	0.165463	0.0610799
chr6	147279902	147280002	2989469	0	+	0.27	[0,0.28]	chr6	280037	13	INTRON	INTRON	STXBP5	ENSG00000164506.15	ENST00000321680.11:ENST00000367481.7:ENST00000546097.5:ENST00000367480.7	protein_coding	protein_coding	protein_coding	protein_coding	1	49	2	2.38757	3.711625	5.03568	0.0552962	0.00446141	0.165463	0.0610799
chr12	122121256	122121356	5240287	0	+	0.47	(0.44,0.476]	chr12	497496	416	INTRON	INTRON	MLXIP	ENSG00000175727.14	ENST00000319080.12	protein_coding	protein_coding	protein_coding	protein_coding	1	37	2	2.39604	3.711535	5.02703	0.0404291	0.00278015	0.161534	0.0469265
chr22	20741827	20741927	7558479	0	-	0.5	(0.476,0.515]	chr22	773046	2	SS5_PROX	SS5_PROX:INTRON	PI4KA	ENSG00000241973.11	ENST00000255882.11:ENST00000494113.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	51	2	1.8388	3.711525	5.58425	0.0564473	2.97744e-4	0.184423	0.0160246
chr14	101857684	101857783	5819472	0	+	0.393939	(0.378,0.408]	chr14	551879	4	INTRON	INTRON	PPP2R5C	ENSG00000078304.20	ENST00000694906.1:ENST00000422945.6:ENST00000328724.9:ENST00000350249.7:ENST00000557621.5:ENST00000556307.5:ENST00000553730.5:ENST00000334743.9:ENST00000445439.7:ENST00000557095.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	83	2	3.68517	3.7115	3.73783	4.8181e-4	3.90172e-4	0.0203411	0.0177751
chr5	104317171	104317271	2443587	0	+	0.36	(0.35,0.378]	chr5	234410	2119	INTRON	INTRON	LINC02163	ENSG00000251026.2	ENST00000662211.1:ENST00000666145.1	lncRNA	lncRNA	lncRNA	lncRNA	3	116	2	3.17264	3.711495	4.25035	6.16722e-4	2.16564e-5	0.0229036	0.00361845
chr8	23547010	23547110	3715280	0	+	0.34	(0.32,0.35]	chr8	345227	34	INTRON	INTRON	SLC25A37	ENSG00000147454.14	ENST00000519973.6:ENST00000290075.10:ENST00000417331.6:ENST00000518881.5:ENST00000520654.1:ENST00000523930.1:ENST00000523883.5:ENST00000517923.1:ENST00000520949.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	64	2	2.18777	3.7114849999999997	5.2352	0.00951422	0.0028268	0.0863913	0.0472361
chr12	132088319	132088419	5250223	0	+	0.22	[0,0.28]	chr12	499287	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	EP400P1	ENSG00000185684.16	ENST00000407361.8:ENST00000446190.5:ENST00000690966.1:ENST00000689047.1:ENST00000454179.7:ENST00000689533.1:ENST00000688036.1:ENST00000688136.1:ENST00000488030.5:ENST00000389560.6:ENST00000689403.1:ENST00000443539.6:ENST00000392352.5:ENST00000613241.1:ENST00000539205.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	5	93	2	1.47169	3.71148	5.95127	0.0479607	7.37141e-4	0.171039	0.02495
chr22	19813940	19814039	7555215	0	-	0.434343	(0.408,0.44]	chr22	772431	11	INTRON	INTRON	GNB1L	ENSG00000185838.14	ENST00000329517.11:ENST00000403325.5:ENST00000405009.5:ENST00000460402.5:ENST00000481086.1:ENST00000453108.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	51	2	1.85305	3.7113899999999997	5.56973	0.0543543	3.81714e-4	0.182243	0.0181283
chr7	121119142	121119242	3394950	0	+	0.25	[0,0.28]	chr7	317723	187	INTRON	INTRON	CPED1	ENSG00000106034.18	ENST00000310396.10:ENST00000428526.5:ENST00000450913.6:ENST00000423795.5:ENST00000443817.1	protein_coding	protein_coding	protein_coding	protein_coding	2	67	2	1.85666	3.711385	5.56611	0.0660997	7.02173e-4	0.181924	0.0241881
chr7	143294973	143295073	3441356	0	+	0.36	(0.35,0.378]	chr7	320926	2	SS5_PROX	SS5_PROX:INTRON	CASP2	ENSG00000106144.20	ENST00000619992.4:ENST00000310447.10:ENST00000350623.7:ENST00000493642.5:ENST00000472067.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	178	2	2.57633	3.711335	4.84634	6.29105e-4	5.00929e-7	0.0230581	3.78502e-4
chr2	216116137	216116237	1014411	0	+	0.36	(0.35,0.378]	chr2	107944	1	SS3_PROX	SS3_PROX:INTRON	XRCC5	ENSG00000079246.16	ENST00000392133.7:ENST00000429133.5:ENST00000476360.1:ENST00000392132.7:ENST00000417391.1:ENST00000451695.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	87	2	3.66151	3.711235	3.76096	4.8203e-4	4.717e-4	0.0203411	0.0196294
chr10	68506384	68506484	4640069	0	-	0.36	(0.35,0.378]	chr10	426789	4	SS5_PROX	SS5_PROX:INTRON	SLC25A16	ENSG00000122912.15	ENST00000609923.6:ENST00000265870.7:ENST00000493963.5:ENST00000474927.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	42	2	2.83709	3.71123	4.58537	0.01435	0.00703328	0.0966737	0.0754576
chr22	49872653	49872752	7543494	0	+	0.454545	(0.44,0.476]	chr22	770840	183	INTRON	INTRON	ZBED4	ENSG00000100426.7	ENST00000216268.6	protein_coding	protein_coding	protein_coding	protein_coding	1	39	2	2.80275	3.711145	4.61954	0.0146513	0.00506805	0.0982604	0.0646039
chr7	152200651	152200750	3678899	0	-	0.454545	(0.44,0.476]	chr7	341510	8	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000683200.1:ENST00000682283.1:ENST00000473186.5:ENST00000679882.1:ENST00000680969.1:ENST00000681033.1:ENST00000682176.1:ENST00000679645.1:ENST00000683254.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	39	2	2.80275	3.711145	4.61954	0.0146513	0.00506805	0.0982604	0.0646039
chr3	33527948	33528048	1652052	0	-	0.34	(0.32,0.35]	chr3	169446	104	INTRON	INTRON	CLASP2	ENSG00000163539.18	ENST00000399362.8:ENST00000682230.1:ENST00000468888.6:ENST00000359576.9:ENST00000650653.1:ENST00000480013.6:ENST00000461133.8:ENST00000487553.5:ENST00000635664.1:ENST00000476251.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	40	2	2.40308	3.711125	5.01917	0.0417732	0.0055659	0.161736	0.0648867
chr3	100278348	100278448	1465741	0	+	0.38	(0.378,0.408]	chr3	153594	107	INTRON	INTRON	TBC1D23	ENSG00000036054.13	ENST00000394144.9:ENST00000485687.5:ENST00000344949.9:ENST00000486274.5:ENST00000471098.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	41	2	2.13703	3.71112	5.28521	0.0797592	4.52877e-4	0.19979	0.0192381
chr17	38853737	38853764	6765146	0	-	0.407407	(0.378,0.408]	chr17	665412	1	EXON_MRNA	EXON_MRNA	RPL23	ENSG00000125691.14	ENST00000584912.5:ENST00000577760.1:ENST00000584056.1	protein_coding	retained_intron	protein_coding	retained_intron	1	40	2	2.72993	3.7108100000000004	4.69169	0.0188736	0.00432302	0.108861	0.0599409
chr4	54042665	54042764	2148120	0	-	0.40404	(0.378,0.408]	chr4	211312	282	INTRON	INTRON	CHIC2	ENSG00000109220.11	ENST00000263921.8:ENST00000512964.5:ENST00000510894.1	protein_coding	protein_coding	protein_coding	protein_coding	1	40	2	2.72993	3.7108100000000004	4.69169	0.0188736	0.00432302	0.108861	0.0599409
chr1	203808710	203808810	296811	0	+	0.38	(0.378,0.408]	chr1	34134	53	INTRON	INTRON	ZC3H11A:ZBED6	ENSG00000058673.17:ENSG00000257315.3	ENST00000367210.3:ENST00000453771.5:ENST00000432282.5:ENST00000638800.1:ENST00000367214.5:ENST00000639812.1:ENST00000367212.7:ENST00000332127.8:ENST00000550078.2:ENST00000495527.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	50	2	2.61188	3.71078	4.80968	0.00679828	0.0047055	0.0711802	0.0631419
chr7	30574605	30574697	3513228	0	-	0.206522	[0,0.28]	chr7	327580	3	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:INTRON	GARS1-DT	ENSG00000196295.13	ENST00000426529.6:ENST00000578245.5:ENST00000656284.1:ENST00000660767.1:ENST00000584199.5:ENST00000667338.1:ENST00000581794.6:ENST00000581665.6:ENST00000663944.1:ENST00000663462.1:ENST00000584372.5:ENST00000582733.5:ENST00000667129.1:ENST00000584023.2	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	3	73	2	2.02929	3.710755	5.39222	0.0189138	0.00453865	0.118303	0.0595107
chr1	244660317	244660417	347783	0	+	0.49	(0.476,0.515]	chr1	40357	39	INTRON	INTRON	DESI2	ENSG00000121644.19	ENST00000263831.11:ENST00000302550.16:ENST00000418162.1	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	2.80729	3.710655	4.61402	0.0126008	0.00947755	0.0980703	0.0817766
chr7	2273541	2273638	3467272	0	-	0.494845	(0.476,0.515]	chr7	324218	12	INTRON	INTRON	SNX8	ENSG00000106266.11	ENST00000222990.8:ENST00000435060.5:ENST00000457286.5:ENST00000435336.5	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	2.80729	3.710655	4.61402	0.0126008	0.00947755	0.0980703	0.0817766
chrX	73949105	73949170	7682144	0	+	0.476923	(0.476,0.515]	chrX	786621	1	SSB_ADJ	SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	JPX:ENSG00000228906	ENSG00000225470.8:ENSG00000228906.1	ENST00000664637.1:ENST00000639185.1:ENST00000655090.1:ENST00000640437.1:ENST00000660546.1:ENST00000667886.1:ENST00000660840.1:ENST00000657179.1:ENST00000670506.1:ENST00000657910.1:ENST00000662120.1:ENST00000671207.1:ENST00000659254.1:ENST00000656624.1:ENST00000667573.1:ENST00000660856.1:ENST00000660836.1:ENST00000668590.1:ENST00000658649.1:ENST00000414209.6:ENST00000654137.1:ENST00000670994.1:ENST00000653479.1:ENST00000602772.5:ENST00000655879.1:ENST00000657372.1:ENST00000657096.1:ENST00000602985.6:ENST00000670685.1:ENST00000670503.1:ENST00000663027.1:ENST00000654995.1:ENST00000602895.6:ENST00000654374.1:ENST00000660087.1:ENST00000665032.1:ENST00000671336.1:ENST00000671476.1:ENST00000667057.1:ENST00000670192.1:ENST00000670464.1:ENST00000665345.1:ENST00000661546.1:ENST00000662543.1:ENST00000602938.6:ENST00000664295.1:ENST00000654005.1:ENST00000669149.1:ENST00000659852.1:ENST00000656509.1:ENST00000602294.6:ENST00000667294.1:ENST00000663470.1:ENST00000602920.6:ENST00000671021.1:ENST00000659849.1:ENST00000667937.1:ENST00000661130.1:ENST00000654196.1:ENST00000655994.1:ENST00000659373.1:ENST00000662239.1:ENST00000670805.1:ENST00000656263.1:ENST00000653069.1:ENST00000657638.1:ENST00000653808.1:ENST00000653929.1:ENST00000653885.1:ENST00000659023.1:ENST00000602546.5:ENST00000664328.1:ENST00000659622.1:ENST00000671518.1:ENST00000670408.1:ENST00000444482.1	lncRNA	lncRNA	lncRNA	lncRNA	1	36	2	2.80729	3.710655	4.61402	0.0126008	0.00947755	0.0980703	0.0817766
chr7	100337663	100337751	3364346	0	+	0.409091	(0.408,0.44]	chr7	314624	2	EXON_LNCRNA	EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	STAG3L5P:STAG3L5P-PVRIG2P-PILRB	ENSG00000242294.6:ENSG00000272752.6	ENST00000473757.5:ENST00000470714.5:ENST00000310771.8:ENST00000483329.6:ENST00000422479.5:ENST00000414292.5:ENST00000444874.5:ENST00000488972.6:ENST00000434211.1	lncRNA	retained_intron	lncRNA:transcribed_unprocessed_pseudogene	retained_intron:lncRNA:processed_transcript	3	107	2	3.28441	3.7106399999999997	4.13687	2.01433e-4	6.40544e-5	0.0124157	0.00711194
chr4	145062598	145062697	2254401	0	-	0.292929	(0.28,0.32]	chr4	220103	85	INTRON	INTRON	ANAPC10	ENSG00000164162.14	ENST00000641499.1:ENST00000506851.5:ENST00000613466.4:ENST00000507656.6:ENST00000502651.5:ENST00000309439.9:ENST00000451299.6:ENST00000510270.5:ENST00000511466.5:ENST00000514390.5:ENST00000513054.5:ENST00000502562.5:ENST00000512680.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	67	2	1.90249	3.710585	5.51868	0.0261803	0.00162747	0.133676	0.0367966
chr13	28281879	28281977	5462282	0	+	0.479592	(0.476,0.515]	chr13	523331	1	INTRON	INTRON	PAN3	ENSG00000152520.14	ENST00000380958.8:ENST00000399613.1	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	2.65268	3.710475	4.76827	0.0201975	0.00600704	0.121243	0.0674604
chr7	135465802	135465902	3648518	0	-	0.51	(0.476,0.515]	chr7	339187	270	INTRON	INTRON	CNOT4	ENSG00000080802.20	ENST00000541284.6:ENST00000451834.5:ENST00000423368.6:ENST00000361528.8:ENST00000428680.6:ENST00000315544.6:ENST00000491203.5:ENST00000498534.5:ENST00000465721.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	36	2	2.65268	3.710475	4.76827	0.0201975	0.00600704	0.121243	0.0674604
chr9	128588098	128588198	4206197	0	+	0.51	(0.476,0.515]	chr9	384774	4	SS5_PROX	SS5_PROX:INTRON	SPTAN1	ENSG00000197694.18	ENST00000372731.8:ENST00000372739.7:ENST00000630804.2:ENST00000625282.2:ENST00000358161.9:ENST00000635853.1:ENST00000630866.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	36	2	2.65268	3.710475	4.76827	0.0201975	0.00600704	0.121243	0.0674604
chr17	82819722	82819822	6694891	0	+	0.41	(0.408,0.44]	chr17	654903	44	INTRON	INTRON	TBCD	ENSG00000141556.22	ENST00000682479.1:ENST00000682722.1:ENST00000684464.1:ENST00000684544.1:ENST00000681983.1:ENST00000684361.1:ENST00000683184.1:ENST00000683282.1:ENST00000684408.1:ENST00000355528.9:ENST00000683444.1:ENST00000684776.1:ENST00000683041.1:ENST00000684760.1:ENST00000684349.1:ENST00000682213.1:ENST00000683009.1:ENST00000682921.1:ENST00000539345.6:ENST00000684000.1:ENST00000684188.1:ENST00000684429.1:ENST00000682610.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	80	2	3.45019	3.710465	3.97074	0.00152664	8.66152e-5	0.0353936	0.00783027
chr12	121912377	121912474	5238421	0	+	0.515464	(0.515,0.57]	chr12	497295	10	INTRON	INTRON	PSMD9	ENSG00000110801.14	ENST00000537407.5:ENST00000540962.5:ENST00000261817.6:ENST00000542602.1:ENST00000541212.6:ENST00000543699.5:ENST00000535293.5:ENST00000544724.5:ENST00000544254.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	33	2	2.65834	3.71039	4.76244	0.0187418	0.00362147	0.117523	0.0533855
chr22	49509284	49509384	7601172	0	-	0.55	(0.515,0.57]	chr22	778566	677	INTRON	INTRON	MIR3667HG	ENSG00000188511.13	ENST00000414287.5:ENST00000416411.1	lncRNA	lncRNA	lncRNA	lncRNA	1	33	2	2.65834	3.71039	4.76244	0.0187418	0.00362147	0.117523	0.0533855
chr6	15292234	15292334	2823408	0	+	0.56	(0.515,0.57]	chr6	265190	429	INTRON	INTRON	JARID2	ENSG00000008083.14	ENST00000341776.7:ENST00000397311.4	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	2.65834	3.71039	4.76244	0.0187418	0.00362147	0.117523	0.0533855
chrX	77905453	77905549	7685009	0	+	0.375	(0.35,0.378]	chrX	786826	3	UTR3	UTR3:EXON_MRNA	COX7B	ENSG00000131174.7	ENST00000650309.2:ENST00000647835.1	protein_coding	protein_coding	protein_coding	protein_coding	2	86	2	3.51348	3.7103599999999997	3.90724	0.00136294	1.41179e-4	0.0336321	0.0102551
chr9	110247233	110247333	4313904	0	-	0.51	(0.476,0.515]	chr9	396564	20	INTRON	INTRON	TXN	ENSG00000136810.13	ENST00000374517.6:ENST00000374515.9	protein_coding	protein_coding	protein_coding	protein_coding	1	37	2	3.07422	3.71035	4.34648	0.0193566	0.00506023	0.108861	0.0646039
chr7	128608413	128608513	3408133	0	+	0.34	(0.32,0.35]	chr7	318369	2	SS5_PROX	SS5_PROX:INTRON	ENSG00000280828:ENSG00000242588	ENSG00000280828.1:ENSG00000242588.6	ENST00000479267.2:ENST00000605862.5	lncRNA	lncRNA	lncRNA:unprocessed_pseudogene	lncRNA:unprocessed_pseudogene	4	73	2	1.95408	3.7102500000000003	5.46642	0.0124054	0.00127669	0.0973643	0.0326395
chr1	113095373	113095473	188324	0	+	0.44	(0.408,0.44]	chr1	20881	1	SS3_PROX	SS3_PROX:INTRON	LRIG2	ENSG00000198799.12	ENST00000361127.6	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	2.82042	3.7101049999999995	4.59979	0.0120121	0.0109537	0.0962115	0.0873034
chr10	18624587	18624687	4570445	0	-	0.43	(0.408,0.44]	chr10	421519	79	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7:ENST00000606425.2	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	2.82042	3.7101049999999995	4.59979	0.0120121	0.0109537	0.0962115	0.0873034
chr11	9418041	9418139	4729754	0	+	0.428571	(0.408,0.44]	chr11	437862	5	INTRON	INTRON	IPO7	ENSG00000205339.10	ENST00000379719.8	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	2.82042	3.7101049999999995	4.59979	0.0120121	0.0109537	0.0962115	0.0873034
chr4	56922058	56922158	1963457	0	+	0.38	(0.378,0.408]	chr4	197059	3	SS3_PROX	SS3_PROX:INTRON	REST	ENSG00000084093.19	ENST00000640168.2:ENST00000309042.12:ENST00000640343.2:ENST00000514063.2:ENST00000638187.2:ENST00000616975.5:ENST00000622863.4:ENST00000619101.5:ENST00000611211.2:ENST00000675105.1:ENST00000675341.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	41	2	2.90162	3.7100799999999996	4.51854	0.0113157	0.00748824	0.0886121	0.0772645
chr7	75917356	75917455	3338916	0	+	0.383838	(0.378,0.408]	chr7	310876	12	INTRON	INTRON	POR	ENSG00000127948.16	ENST00000453773.5:ENST00000439963.5:ENST00000448410.5:ENST00000461988.6:ENST00000471238.5:ENST00000421059.1:ENST00000394893.5:ENST00000412521.5:ENST00000414186.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	41	2	2.90162	3.7100799999999996	4.51854	0.0113157	0.00748824	0.0886121	0.0772645
chr18	9581532	9581631	6945975	0	-	0.363636	(0.35,0.378]	chr18	686991	40	INTRON	INTRON	PPP4R1	ENSG00000154845.16	ENST00000400555.7:ENST00000400556.8:ENST00000285124.12:ENST00000580583.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	61	2	2.15877	3.7100100000000005	5.26125	0.0102036	0.00191117	0.089002	0.03947
chr10	92887358	92887458	4492005	0	+	0.32	(0.28,0.32]	chr10	413705	384	INTRON	INTRON	EXOC6	ENSG00000138190.17	ENST00000671701.1:ENST00000672817.1:ENST00000371552.8:ENST00000443748.6:ENST00000371543.5:ENST00000260762.10	protein_coding	protein_coding	protein_coding	protein_coding	1	45	2	2.45545	3.709995	4.96454	0.0438092	0.00344078	0.14901	0.0539802
chr21	21152168	21152268	7380531	0	+	0.29	(0.28,0.32]	chr21	752602	1532	INTRON	INTRON	NCAM2	ENSG00000154654.15	ENST00000400546.6	protein_coding	protein_coding	protein_coding	protein_coding	1	45	2	2.45545	3.709995	4.96454	0.0438092	0.00344078	0.14901	0.0539802
chr1	227035607	227035707	648862	0	-	0.29	(0.28,0.32]	chr1	76958	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	CDC42BPA	ENSG00000143776.20	ENST00000366766.8:ENST00000366769.7:ENST00000334218.9:ENST00000366767.7:ENST00000448940.5:ENST00000442054.5:ENST00000366764.8:ENST00000441725.1	protein_coding	protein_coding	protein_coding	protein_coding	2	100	2	3.68354	3.7099	3.73626	7.58796e-4	5.5135e-4	0.025219	0.0213455
chr16	16541603	16541703	6311278	0	+	0.42	(0.408,0.44]	chr16	604098	416	INTRON	INTRON	ENSG00000260126	ENSG00000260126.2	ENST00000567465.2	lncRNA	lncRNA	lncRNA	lncRNA	1	36	2	2.66579	3.709885	4.75398	0.019342	0.00703931	0.119831	0.0718189
chr16	20736781	20736879	6459026	0	-	0.438776	(0.408,0.44]	chr16	623030	33	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	THUMPD1	ENSG00000066654.14	ENST00000636554.1:ENST00000381337.6:ENST00000396083.7:ENST00000570231.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	36	2	2.66579	3.709885	4.75398	0.019342	0.00703931	0.119831	0.0718189
chr16	30307849	30307948	6473095	0	-	0.414141	(0.408,0.44]	chr16	625713	15	INTRON	INTRON	SMG1P5	ENSG00000183604.15	ENST00000529428.5:ENST00000411546.4:ENST00000691460.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	1	36	2	2.66579	3.709885	4.75398	0.019342	0.00703931	0.119831	0.0718189
chr2	175979509	175979609	1272974	0	-	0.42	(0.408,0.44]	chr2	134566	3	SS5_PROX	SS5_PROX:INTRON	LNPK	ENSG00000144320.14	ENST00000272748.9:ENST00000544803.5:ENST00000409660.5:ENST00000392540.6	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	2.66579	3.709885	4.75398	0.019342	0.00703931	0.119831	0.0718189
chr20	316957	317055	7302509	0	-	0.438776	(0.408,0.44]	chr20	743412	2	EXON_LNCRNA	EXON_LNCRNA	NRSN2-AS1	ENSG00000225377.6	ENST00000657126.1	lncRNA	lncRNA	lncRNA	lncRNA	1	36	2	2.66579	3.709885	4.75398	0.019342	0.00703931	0.119831	0.0718189
chr21	44139358	44139456	7416338	0	+	0.489796	(0.476,0.515]	chr21	756033	17	INTRON	INTRON	GATD3	ENSG00000160221.18	ENST00000644251.1:ENST00000645487.1:ENST00000495007.5:ENST00000427803.6:ENST00000493883.5:ENST00000480786.1:ENST00000348499.9:ENST00000291577.11:ENST00000389690.7:ENST00000646873.1:ENST00000419699.1:ENST00000449622.6:ENST00000642815.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	79	2	3.67544	3.709885	3.74433	5.51624e-4	2.85053e-4	0.0216014	0.0150568
chr3	45696563	45696663	1417110	0	+	0.44	(0.408,0.44]	chr3	148654	58	INTRON	INTRON	SACM1L	ENSG00000211456.13	ENST00000464524.5:ENST00000455997.5:ENST00000418611.5:ENST00000672477.1:ENST00000463237.5:ENST00000441228.5:ENST00000463347.5:ENST00000438671.3:ENST00000389061.10:ENST00000445499.2:ENST00000478586.3:ENST00000672858.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	36	2	2.66579	3.709885	4.75398	0.019342	0.00703931	0.119831	0.0718189
chr3	195678160	195678254	1593638	0	+	0.414894	(0.408,0.44]	chr3	165060	2	SS5_PROX	SS5_PROX:INTRON	MUC20-OT1	ENSG00000242086.8	ENST00000429897.5:ENST00000445430.5:ENST00000631288.2:ENST00000600527.5	lncRNA	lncRNA	lncRNA	lncRNA	1	36	2	2.66579	3.709885	4.75398	0.019342	0.00703931	0.119831	0.0718189
chr6	43504097	43504192	2870895	0	+	0.431579	(0.408,0.44]	chr6	272170	2	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	TJAP1	ENSG00000137221.14	ENST00000372444.6:ENST00000372445.9:ENST00000436109.6:ENST00000259751.5:ENST00000372452.5:ENST00000372449.5:ENST00000438588.6:ENST00000483640.5:ENST00000612912.4:ENST00000454762.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	36	2	2.66579	3.709885	4.75398	0.019342	0.00703931	0.119831	0.0718189
chrX	68522259	68522359	7674009	0	+	0.42	(0.408,0.44]	chrX	785432	1	SS3_PROX	SS3_PROX:INTRON	YIPF6	ENSG00000181704.12	ENST00000451537.5:ENST00000374622.3:ENST00000374643.7:ENST00000462683.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	36	2	2.66579	3.709885	4.75398	0.019342	0.00703931	0.119831	0.0718189
chrX	153342783	153342882	7737584	0	+	0.414141	(0.408,0.44]	chrX	791778	57	INTRON	INTRON	ZNF275	ENSG00000063587.15	ENST00000370249.3:ENST00000650114.2:ENST00000370251.3	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	2.66579	3.709885	4.75398	0.019342	0.00703931	0.119831	0.0718189
chr2	69363770	69363870	1147070	0	-	0.42	(0.408,0.44]	chr2	122510	1	SS3_PROX	SS3_PROX:INTRON	GFPT1	ENSG00000198380.13	ENST00000361060.5:ENST00000357308.9:ENST00000674507.1:ENST00000674438.1:ENST00000494201.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	37	2	3.08738	3.70988	4.33238	0.0218901	0.00478231	0.11491	0.0636201
chr2	131061879	131061979	1228775	0	-	0.42	(0.408,0.44]	chr2	130981	58	INTRON	INTRON	FAM168B	ENSG00000152102.18	ENST00000389915.4:ENST00000409185.5	protein_coding	protein_coding	protein_coding	protein_coding	1	37	2	3.08738	3.70988	4.33238	0.0218901	0.00478231	0.11491	0.0636201
chr19	36571433	36571533	7174884	0	-	0.49	(0.476,0.515]	chr19	725088	149	INTRON	INTRON	ZNF529	ENSG00000186020.13	ENST00000591340.6:ENST00000334116.7:ENST00000586115.5:ENST00000585983.5:ENST00000585960.5	protein_coding	protein_coding	protein_coding	protein_coding	1	42	2	3.19975	3.709695	4.21964	0.0167715	0.00383299	0.110511	0.0542786
chr15	64490202	64490302	6044384	0	+	0.47	(0.44,0.476]	chr15	575688	290	INTRON	INTRON	ZNF609	ENSG00000180357.10	ENST00000326648.5:ENST00000416172.1	protein_coding	protein_coding	protein_coding	protein_coding	2	48	2	2.33272	3.709655	5.08659	0.0129984	0.00226401	0.0991656	0.0425438
chr8	91082517	91082616	3797121	0	+	0.464646	(0.44,0.476]	chr8	351901	14	INTRON	INTRON	OTUD6B	ENSG00000155100.11	ENST00000285420.8:ENST00000617869.4:ENST00000615618.1:ENST00000522894.5:ENST00000404789.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	48	2	2.33272	3.709655	5.08659	0.0129984	0.00226401	0.0991656	0.0425438
chr1	219201257	219201356	318654	0	+	0.272727	[0,0.28]	chr1	36461	21	INTRON	INTRON	LYPLAL1	ENSG00000143353.12	ENST00000460522.5:ENST00000366927.3:ENST00000366928.10:ENST00000477938.5:ENST00000463964.5:ENST00000483635.5:ENST00000474379.5:ENST00000469590.5:ENST00000478794.5:ENST00000475724.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	93	2	1.65319	3.7096349999999996	5.76608	0.0275612	0.00140074	0.137011	0.0340865
chr18	59332222	59332314	6980762	0	-	0.369565	(0.35,0.378]	chr18	690725	3	INTRON	INTRON	LMAN1	ENSG00000074695.6	ENST00000251047.6:ENST00000587918.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	51	2	2.10859	3.7095849999999997	5.31058	0.0272722	0.00160599	0.136494	0.0364977
chr2	190918425	190918524	959864	0	+	0.373737	(0.35,0.378]	chr2	104198	47	INTRON	INTRON	GLS	ENSG00000115419.13	ENST00000320717.8:ENST00000338435.8:ENST00000417154.5:ENST00000461965.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	51	2	2.10859	3.7095849999999997	5.31058	0.0272722	0.00160599	0.136494	0.0364977
chr20	35657832	35657931	7335711	0	-	0.515152	(0.476,0.515]	chr20	747296	21	INTRON	INTRON	CPNE1:RBM12	ENSG00000214078.13:ENSG00000244462.8	ENST00000352393.8:ENST00000397443.7:ENST00000483359.5:ENST00000397442.5:ENST00000401607.6:ENST00000437340.5:ENST00000430570.5:ENST00000412056.5:ENST00000414664.5:ENST00000416778.5:ENST00000439806.6:ENST00000439669.5:ENST00000420363.5:ENST00000434795.5:ENST00000440240.5:ENST00000458038.5:ENST00000437100.5:ENST00000414711.5:ENST00000435747.2:ENST00000374114.8:ENST00000359646.1:ENST00000374104.7:ENST00000424458.5:ENST00000431148.1:ENST00000435161.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	37	2	2.38442	3.7095399999999996	5.03466	0.0417472	0.00252065	0.161736	0.0446195
chr9	123850872	123850972	4345232	0	-	0.24	[0,0.28]	chr9	399130	525	INTRON	INTRON	DENND1A	ENSG00000119522.17	ENST00000373624.6:ENST00000394215.7:ENST00000373620.7:ENST00000373618.1	protein_coding	protein_coding	protein_coding	protein_coding	1	49	2	2.27119	3.70948	5.14777	0.070351	0.00311898	0.184298	0.0512673
chr12	26966170	26966266	5097681	0	+	0.21875	[0,0.28]	chr12	481635	16	UTR3	UTR3:EXON_MRNA	FGFR1OP2	ENSG00000111790.14	ENST00000229395.8:ENST00000327214.5	protein_coding	protein_coding	protein_coding	protein_coding	1	49	2	2.44242	3.7093049999999996	4.97619	0.0491024	0.00535756	0.155269	0.0663076
chr1	38024621	38024720	74394	0	+	0.616162	(0.57,1]	chr1	9622	11	UTR3	UTR3:EXON_MRNA	UTP11	ENSG00000183520.12	ENST00000373014.5	protein_coding	protein_coding	protein_coding	protein_coding	1	26	2	2.36411	3.7093000000000003	5.05449	0.0408868	1.79828e-4	0.161534	0.0121697
chr7	155775753	155775852	3453233	0	+	0.616162	(0.57,1]	chr7	322755	7	UTR3	UTR3:EXON_MRNA	RBM33	ENSG00000184863.11	ENST00000401878.8:ENST00000341148.7	protein_coding	protein_coding	protein_coding	protein_coding	1	26	2	2.36411	3.7093000000000003	5.05449	0.0408868	1.79828e-4	0.161534	0.0121697
chr11	125639331	125639430	4883126	0	+	0.343434	(0.32,0.35]	chr11	456586	14	INTRON	INTRON	CHEK1	ENSG00000149554.14	ENST00000438015.7:ENST00000427383.6:ENST00000428830.6:ENST00000544373.5:ENST00000278916.8:ENST00000532449.6:ENST00000534070.5:ENST00000524737.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	168	2	3.01123	3.709275	4.40732	8.14476e-5	2.66281e-5	0.00755207	0.00428402
chr17	2252187	2252287	6704208	0	-	0.5	(0.476,0.515]	chr17	656335	71	INTRON	INTRON	SMG6	ENSG00000070366.14	ENST00000263073.11:ENST00000354901.8:ENST00000570606.5	protein_coding	protein_coding	protein_coding	protein_coding	2	50	2	2.72507	3.709135	4.6932	0.00753088	0.0029369	0.074841	0.0496505
chr14	24434397	24434494	5659591	0	+	0.494845	(0.476,0.515]	chr14	540096	10	INTRON	INTRON	KHNYN	ENSG00000100441.10	ENST00000251343.9:ENST00000556842.5:ENST00000553935.6:ENST00000554268.1	protein_coding	protein_coding	protein_coding	protein_coding	4	71	2	1.78917	3.7090500000000004	5.62893	0.022887	8.45697e-5	0.118056	0.00776967
chr10	124768697	124768796	4712313	0	-	0.474747	(0.44,0.476]	chr10	434810	27	INTRON	INTRON	EEF1AKMT2	ENSG00000203791.15	ENST00000652548.1:ENST00000466270.5:ENST00000368836.7:ENST00000464099.5:ENST00000498770.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	128	2	2.79565	3.7089250000000002	4.6222	7.94781e-4	1.68586e-6	0.0260201	7.83961e-4
chr6	156959863	156959963	3008989	0	+	0.36	(0.35,0.378]	chr6	281124	161	INTRON	INTRON	ARID1B	ENSG00000049618.24	ENST00000346085.10:ENST00000636930.2:ENST00000647938.1:ENST00000350026.10:ENST00000674298.1:ENST00000674190.1:ENST00000414678.7:ENST00000638000.1:ENST00000319584.11:ENST00000452544.2:ENST00000637887.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	162	2	2.91161	3.708895	4.50618	2.24701e-4	4.64451e-6	0.013767	0.00144728
chr10	17446065	17446164	4568933	0	-	0.424242	(0.408,0.44]	chr10	421387	551	INTRON	INTRON	ST8SIA6	ENSG00000148488.17	ENST00000377602.5:ENST00000648997.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	37	2	2.3975	3.70889	5.02028	0.040266	0.00303216	0.161534	0.0493883
chr17	66741921	66742021	6666706	0	+	0.41	(0.408,0.44]	chr17	650402	2	SS5_PROX	SS5_PROX:INTRON	PRKCA	ENSG00000154229.12	ENST00000413366.8:ENST00000284384.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	37	2	2.3975	3.70889	5.02028	0.040266	0.00303216	0.161534	0.0493883
chr21	33583927	33584008	7441676	0	-	0.432099	(0.408,0.44]	chr21	759563	3	SS3_PROX	SS3_PROX:INTRON	DONSON	ENSG00000159147.18	ENST00000303113.10:ENST00000453626.5:ENST00000303071.10:ENST00000457359.5:ENST00000417871.5:ENST00000442660.5:ENST00000444517.5:ENST00000437395.5:ENST00000432378.5:ENST00000440810.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	37	2	2.3975	3.70889	5.02028	0.040266	0.00303216	0.161534	0.0493883
chr7	128569620	128569720	3407740	0	+	0.3	(0.28,0.32]	chr7	318333	355	INTRON	INTRON	ENSG00000280828	ENSG00000280828.1	ENST00000479267.2	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	2	56	2	2.42868	3.7087	4.98872	0.0105331	0.00838468	0.0908969	0.0774402
chr2	25851845	25851944	1085275	0	-	0.474747	(0.44,0.476]	chr2	115962	59	INTRON	INTRON	ASXL2	ENSG00000143970.18	ENST00000435504.9:ENST00000336112.9:ENST00000682588.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	48	2	2.39003	3.7085299999999997	5.02703	0.0106488	0.00278015	0.0915714	0.0469265
chr8	60551851	60551951	3758149	0	+	0.45	(0.44,0.476]	chr8	349495	342	INTRON	INTRON	RAB2A	ENSG00000104388.15	ENST00000531289.5:ENST00000262646.12:ENST00000481569.1:ENST00000529579.5:ENST00000466595.5:ENST00000429861.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	48	2	2.39003	3.7085299999999997	5.02703	0.0106488	0.00278015	0.0915714	0.0469265
chr2	135060927	135061024	872755	0	+	0.453608	(0.44,0.476]	chr2	97739	5	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	RAB3GAP1	ENSG00000115839.19	ENST00000539493.3:ENST00000688088.1:ENST00000693554.1:ENST00000690785.1:ENST00000689880.1:ENST00000264158.13:ENST00000686403.1:ENST00000690208.1:ENST00000691478.1:ENST00000686114.1:ENST00000685967.1:ENST00000442034.5:ENST00000687199.1:ENST00000691339.1:ENST00000688182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	52	2	1.96602	3.708495	5.45097	0.0426807	1.90652e-4	0.148082	0.0120089
chr7	119891204	119891304	3630253	0	-	0.31	(0.28,0.32]	chr7	337335	900	INTRON	INTRON	LINC02476	ENSG00000225546.6	ENST00000660268.1:ENST00000431071.5:ENST00000426413.2	lncRNA	lncRNA	lncRNA	lncRNA	3	67	2	2.06884	3.708245	5.34765	0.0152581	0.00287138	0.108569	0.0474836
chr21	21164165	21164265	7380651	0	+	0.3	(0.28,0.32]	chr21	752602	1652	INTRON	INTRON	NCAM2	ENSG00000154654.15	ENST00000400546.6	protein_coding	protein_coding	protein_coding	protein_coding	1	46	2	2.73077	3.7080200000000003	4.68527	0.0220748	0.00819419	0.115395	0.0810802
chr4	17836858	17836958	1927327	0	+	0.29	(0.28,0.32]	chr4	193779	3	SS3_PROX	SS3_PROX:INTRON	NCAPG	ENSG00000109805.10	ENST00000251496.7:ENST00000514176.5:ENST00000510063.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	46	2	2.73077	3.7080200000000003	4.68527	0.0220748	0.00819419	0.115395	0.0810802
chr20	38085946	38086046	7269409	0	+	0.5	(0.476,0.515]	chr20	738724	3	SS5_PROX	SS5_PROX:INTRON	RPRD1B	ENSG00000101413.12	ENST00000462548.6:ENST00000373433.9:ENST00000449186.2:ENST00000618318.1:ENST00000614670.1:ENST00000471511.1:ENST00000484683.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	99	2	1.22598	3.70784	6.1897	0.0554705	3.83137e-6	0.165463	0.00129308
chr1	28952750	28952850	59338	0	+	0.32	(0.28,0.32]	chr1	7621	376	INTRON	INTRON	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000647918.1:ENST00000646800.1:ENST00000644342.1:ENST00000646189.1:ENST00000482464.6:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000646260.1:ENST00000373798.5:ENST00000644600.1:ENST00000649674.1:ENST00000643173.1:ENST00000343067.9:ENST00000644780.1:ENST00000650265.1:ENST00000648181.1:ENST00000643604.1:ENST00000648891.1:ENST00000373797.2:ENST00000349460.9:ENST00000645184.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	99	2	3.4621	3.7078249999999997	3.95355	0.00218379	1.55324e-4	0.0417893	0.0106835
chr20	4014544	4014644	7309398	0	-	0.31	(0.28,0.32]	chr20	744300	398	INTRON	INTRON	RNF24	ENSG00000101236.17	ENST00000336095.10:ENST00000358395.11:ENST00000545616.2	protein_coding	protein_coding	protein_coding	protein_coding	1	43	2	3.07744	3.707545	4.33765	0.039714	0.00604536	0.143072	0.0700813
chr11	108064118	108064217	4856288	0	+	0.363636	(0.35,0.378]	chr11	452903	88	INTRON	INTRON	CUL5	ENSG00000166266.14	ENST00000393094.7:ENST00000531427.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	41	2	2.32443	3.7074749999999996	5.09052	0.0544216	0.00123501	0.164972	0.0326215
chr2	171004755	171004854	1262514	0	-	0.30303	(0.28,0.32]	chr2	133802	66	INTRON	INTRON	TLK1	ENSG00000198586.14	ENST00000431350.7:ENST00000360843.7:ENST00000359766.7:ENST00000521943.5:ENST00000434911.6:ENST00000409443.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	45	2	2.32871	3.707465	5.08622	0.0581621	0.00227525	0.167723	0.0437013
chr4	77075176	77075254	2165942	0	-	0.448718	(0.44,0.476]	chr4	213640	2	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	CCNI	ENSG00000118816.11	ENST00000237654.9:ENST00000511943.5:ENST00000513774.1:ENST00000507788.2:ENST00000515790.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	59	2	2.38763	3.70733	5.02703	0.00394089	0.00278015	0.0573041	0.0469265
chr1	63424535	63424635	133054	0	+	0.3	(0.28,0.32]	chr1	15111	47	INTRON	INTRON	ALG6	ENSG00000088035.18	ENST00000647818.1:ENST00000603108.6:ENST00000648964.1:ENST00000263440.6:ENST00000650494.1:ENST00000649570.1:ENST00000465969.5:ENST00000462390.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	45	2	2.51488	3.7072499999999997	4.89962	0.0380957	0.00425206	0.141678	0.0595557
chr17	62496188	62496288	6653052	0	+	0.31	(0.28,0.32]	chr17	649307	97	INTRON	INTRON	TLK2	ENSG00000146872.19	ENST00000582809.5:ENST00000684213.1:ENST00000583843.5:ENST00000579450.5:ENST00000577616.1:ENST00000582195.6:ENST00000682085.1:ENST00000580705.5:ENST00000346027.10:ENST00000326270.13:ENST00000682203.1:ENST00000343388.11:ENST00000683536.1:ENST00000684440.1:ENST00000684772.1:ENST00000682274.1:ENST00000682827.1:ENST00000583690.6:ENST00000682075.1:ENST00000683104.1:ENST00000684012.1:ENST00000581041.5:ENST00000684553.1:ENST00000683737.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	45	2	2.51488	3.7072499999999997	4.89962	0.0380957	0.00425206	0.141678	0.0595557
chr4	102872010	102872110	2007497	0	+	0.3	(0.28,0.32]	chr4	200245	21	INTRON	INTRON	CISD2	ENSG00000145354.12	ENST00000646632.1:ENST00000273986.10:ENST00000574446.1:ENST00000643561.1:ENST00000503643.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	45	2	2.51488	3.7072499999999997	4.89962	0.0380957	0.00425206	0.141678	0.0595557
chr19	3059305	3059402	7117506	0	-	0.515464	(0.515,0.57]	chr19	715688	12	INTRON	INTRON	TLE5	ENSG00000104964.15	ENST00000221561.12:ENST00000327141.9:ENST00000586742.5:ENST00000592330.5:ENST00000586839.1:ENST00000585557.1:ENST00000585782.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	60	2	2.03368	3.7072200000000004	5.38076	0.00803127	3.24968e-4	0.0803474	0.0165891
chr16	89374431	89374531	6542429	0	-	0.49	(0.476,0.515]	chr16	634240	9	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000647238.1:ENST00000644045.1:ENST00000643147.1:ENST00000644139.1:ENST00000568512.6:ENST00000566973.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	58	2	2.20789	3.70717	5.20645	0.00820497	0.00136049	0.081115	0.0336321
chr12	57062918	57063018	5336684	0	-	0.25	[0,0.28]	chr12	510346	4	SS5_PROX	SS5_PROX:INTRON	NEMP1	ENSG00000166881.10	ENST00000300128.9:ENST00000379391.7:ENST00000554340.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	61	2	2.41169	3.70716	5.00263	0.013055	0.0122872	0.0970106	0.093385
chr1	43672474	43672573	85716	0	+	0.50505	(0.476,0.515]	chr1	11569	2	INTRON	INTRON	KDM4A	ENSG00000066135.13	ENST00000372396.4	protein_coding	protein_coding	protein_coding	protein_coding	2	48	2	2.32001	3.7071199999999997	5.09423	0.0136217	0.00204588	0.101682	0.04086
chr1	207344560	207344660	303505	0	+	0.41	(0.408,0.44]	chr1	34926	36	INTRON	INTRON	CD55	ENSG00000196352.18	ENST00000695822.1:ENST00000695823.1:ENST00000695826.1:ENST00000695825.1:ENST00000695827.1:ENST00000645323.1:ENST00000391921.9:ENST00000367064.9:ENST00000314754.12:ENST00000644836.1:ENST00000476590.1:ENST00000465534.5:ENST00000618707.2:ENST00000635614.2:ENST00000695831.1:ENST00000634386.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	48	2	2.33431	3.70707	5.07983	0.0129219	0.00247652	0.0990564	0.0446195
chr5	32144380	32144479	2597216	0	-	0.434343	(0.408,0.44]	chr5	246744	1	INTRON	INTRON	GOLPH3	ENSG00000113384.14	ENST00000265070.7:ENST00000503610.5:ENST00000512668.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	48	2	2.33431	3.70707	5.07983	0.0129219	0.00247652	0.0990564	0.0446195
chr1	42231261	42231361	431391	0	-	0.5	(0.476,0.515]	chr1	52311	29	INTRON	INTRON	FOXJ3	ENSG00000198815.9	ENST00000372573.5:ENST00000372572.5:ENST00000361776.5:ENST00000545068.5:ENST00000361346.6:ENST00000445886.5	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	2.56033	3.7070600000000002	4.85379	0.0287634	0.00234214	0.127066	0.0442989
chr1	47345007	47345107	97686	0	+	0.5	(0.476,0.515]	chr1	13138	105	INTRON	INTRON	CMPK1	ENSG00000162368.14	ENST00000371873.10:ENST00000371871.8:ENST00000471289.2:ENST00000450808.2:ENST00000371870.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	38	2	2.56033	3.7070600000000002	4.85379	0.0287634	0.00234214	0.127066	0.0442989
chr15	75863768	75863868	6065266	0	+	0.49	(0.476,0.515]	chr15	577549	34	INTRON	INTRON	UBE2Q2	ENSG00000140367.12	ENST00000569423.5:ENST00000267938.9:ENST00000561723.5:ENST00000561851.5:ENST00000426727.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	38	2	2.56033	3.7070600000000002	4.85379	0.0287634	0.00234214	0.127066	0.0442989
chr3	155805296	155805396	1843995	0	-	0.51	(0.476,0.515]	chr3	185521	3	SS5_PROX	SS5_PROX:INTRON	C3orf33	ENSG00000174928.16	ENST00000340171.7:ENST00000482061.6:ENST00000534941.2:ENST00000465810.1:ENST00000486435.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	38	2	2.56033	3.7070600000000002	4.85379	0.0287634	0.00234214	0.127066	0.0442989
chr9	92865652	92865751	4289020	0	-	0.515152	(0.476,0.515]	chr9	394525	31	INTRON	INTRON	ZNF484	ENSG00000127081.14	ENST00000375495.8:ENST00000395505.6:ENST00000395506.7:ENST00000332591.6	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	2.56033	3.7070600000000002	4.85379	0.0287634	0.00234214	0.127066	0.0442989
chr22	19352764	19352855	7553612	0	-	0.582418	(0.57,1]	chr22	772190	10	INTRON	INTRON	HIRA:C22orf39	ENSG00000100084.14:ENSG00000242259.9	ENST00000263208.5:ENST00000340170.8:ENST00000509549.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	25	2	2.52405	3.707015	4.88998	0.0263139	4.016e-4	0.133676	0.0185763
chr1	40235391	40235491	80712	0	+	0.39	(0.378,0.408]	chr1	10444	2	SS3_PROX	SS3_PROX:INTRON	RLF	ENSG00000117000.9	ENST00000372771.5	protein_coding	protein_coding	protein_coding	protein_coding	2	52	2	2.82967	3.70697	4.58427	0.0128325	0.00189968	0.0926667	0.0402736
chr5	39026133	39026233	2605165	0	-	0.38	(0.378,0.408]	chr5	247896	46	INTRON	INTRON	RICTOR	ENSG00000164327.13	ENST00000357387.8:ENST00000511516.5:ENST00000296782.9:ENST00000510711.5:ENST00000513566.1:ENST00000514735.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	52	2	2.82967	3.70697	4.58427	0.0128325	0.00189968	0.0926667	0.0402736
chr11	28165831	28165930	4752736	0	+	0.363636	(0.35,0.378]	chr11	440107	18	INTRON	INTRON	METTL15	ENSG00000169519.21	ENST00000406787.7:ENST00000451385.6:ENST00000407364.8:ENST00000532947.2:ENST00000634627.1:ENST00000634973.1:ENST00000303459.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	40	2	3.21677	3.7069349999999996	4.1971	0.0367539	0.00313804	0.138959	0.0514466
chr16	21615103	21615202	6319099	0	+	0.353535	(0.35,0.378]	chr16	604923	19	INTRON	INTRON	METTL9	ENSG00000197006.15	ENST00000567404.5:ENST00000396014.8:ENST00000358154.8:ENST00000562379.1:ENST00000570074.1:ENST00000562961.1:ENST00000568826.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	40	2	3.21677	3.7069349999999996	4.1971	0.0367539	0.00313804	0.138959	0.0514466
chr19	41299982	41300078	7071415	0	+	0.552083	(0.515,0.57]	chr19	706784	7	INTRON	INTRON	HNRNPUL1	ENSG00000105323.18	ENST00000352456.7:ENST00000595018.5:ENST00000392006.8:ENST00000378215.8:ENST00000595196.5:ENST00000617774.1:ENST00000602130.5:ENST00000593587.5:ENST00000263367.7:ENST00000599614.5:ENST00000600493.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	47	2	2.48902	3.706875	4.92473	0.00760558	0.00108255	0.0749571	0.0300133
chr2	26038111	26038210	713138	0	+	0.50505	(0.476,0.515]	chr2	82438	30	INTRON	INTRON	RAB10	ENSG00000084733.11	ENST00000264710.5:ENST00000495146.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	39	2	2.23335	3.7068700000000003	5.18039	0.0634557	6.58744e-4	0.177047	0.0232396
chr1	65531508	65531608	138300	0	+	0.38	(0.378,0.408]	chr1	15499	53	INTRON	INTRON	LEPR	ENSG00000116678.20	ENST00000371060.7:ENST00000371059.7:ENST00000349533.11:ENST00000616738.4:ENST00000344610.12:ENST00000462765.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	83	2	3.32016	3.70681	4.09346	0.00268328	4.66745e-5	0.0464781	0.00555772
chr15	55372640	55372740	6181544	0	-	0.29	(0.28,0.32]	chr15	589228	7	EXON_MRNA	EXON_MRNA:PRIMIRNA:INTRON	CCPG1:MIR628	ENSG00000260916.8:ENSG00000283891.1	ENST00000442196.8:ENST00000310958.10:ENST00000425574.7:ENST00000568808.5:ENST00000568372.5:ENST00000569205.5:ENST00000563171.5:ENST00000570272.5:ENST00000385229.3	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:primary_miRNA	4	77	2	1.93579	3.70679	5.47779	0.0139701	0.00187048	0.10247	0.0390476
chr2	238179982	238180081	1344002	0	-	0.515152	(0.476,0.515]	chr2	140893	60	INTRON	INTRON	ILKAP	ENSG00000132323.9	ENST00000254654.8:ENST00000463129.5:ENST00000612675.4:ENST00000622223.4:ENST00000450411.1:ENST00000466468.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	66	2	1.87147	3.706785	5.5421	0.0157856	3.56777e-4	0.109464	0.0175154
chr3	187060127	187060227	1587492	0	+	0.61	(0.57,1]	chr3	164399	84	INTRON	INTRON	ST6GAL1	ENSG00000073849.16	ENST00000169298.8:ENST00000457772.6:ENST00000455441.5:ENST00000427315.5:ENST00000677292.1:ENST00000676633.1:ENST00000448044.5:ENST00000416235.6:ENST00000448449.1:ENST00000442023.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	59	2	3.52545	3.7067550000000002	3.88806	6.56297e-5	2.80799e-5	0.0067007	0.00435887
chr10	21603035	21603135	4405107	0	+	0.37	(0.35,0.378]	chr10	406466	72	INTRON	INTRON	MLLT10	ENSG00000078403.17	ENST00000651097.1:ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000650772.1:ENST00000651298.1:ENST00000495130.5:ENST00000377059.7:ENST00000652258.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	77	2	1.40722	3.7066299999999996	6.00604	0.0733776	1.74719e-5	0.190105	0.00318005
chr3	15766911	15767010	1623509	0	-	0.343434	(0.32,0.35]	chr3	168009	2	INTRON	INTRON	ANKRD28	ENSG00000206560.12	ENST00000399451.6:ENST00000624145.3:ENST00000683139.1:ENST00000412318.5:ENST00000497037.5:ENST00000451422.1:ENST00000498524.5:ENST00000439830.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	53	2	2.45306	3.706385	4.95971	0.00916394	0.00663522	0.0855292	0.0703181
chr19	29962645	29962744	7047758	0	+	0.242424	[0,0.28]	chr19	702663	42	INTRON	INTRON	URI1	ENSG00000105176.18	ENST00000360605.8:ENST00000570564.5:ENST00000574233.5:ENST00000392271.6:ENST00000574110.5:ENST00000574666.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	60	2	2.15457	3.70636	5.25815	0.0269306	0.0066548	0.135288	0.0703807
chr1	31047327	31047427	412712	0	-	0.38	(0.378,0.408]	chr1	49733	181	INTRON	INTRON	PUM1	ENSG00000134644.16	ENST00000426105.7:ENST00000373747.7:ENST00000257075.9:ENST00000424085.6:ENST00000525843.5:ENST00000440538.6:ENST00000373741.8:ENST00000373742.6:ENST00000526215.5:ENST00000525948.5:ENST00000480602.1:ENST00000524516.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	135	2	2.59025	3.70627	4.82229	0.00217503	4.75984e-7	0.0417893	3.6809e-4
chr1	9927074	9927171	376131	0	-	0.443299	(0.44,0.476]	chr1	43838	9	UTR3	UTR3:EXON_MRNA:INTRON	LZIC	ENSG00000162441.12	ENST00000488540.5:ENST00000377223.6	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	2.58033	3.706175	4.83202	0.0247511	0.00525002	0.131869	0.0633615
chr1	18898138	18898236	385276	0	-	0.459184	(0.44,0.476]	chr1	45589	6	INTRON	INTRON	ALDH4A1	ENSG00000159423.17	ENST00000375341.8:ENST00000290597.9:ENST00000538839.5:ENST00000432718.1	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	2.58033	3.706175	4.83202	0.0247511	0.00525002	0.131869	0.0633615
chr1	50785802	50785901	450508	0	-	0.464646	(0.44,0.476]	chr1	54249	407	INTRON	INTRON	FAF1	ENSG00000185104.21	ENST00000396153.7:ENST00000487898.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	36	2	2.58033	3.706175	4.83202	0.0247511	0.00525002	0.131869	0.0633615
chr14	67902804	67902904	5766203	0	+	0.45	(0.44,0.476]	chr14	547058	152	INTRON	INTRON	RAD51B	ENSG00000182185.19	ENST00000487861.5:ENST00000471583.6:ENST00000479335.5:ENST00000487270.5:ENST00000488612.5:ENST00000553595.5:ENST00000497460.5:ENST00000492236.5:ENST00000554244.5:ENST00000478014.5:ENST00000469165.6:ENST00000460526.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	36	2	2.58033	3.706175	4.83202	0.0247511	0.00525002	0.131869	0.0633615
chr19	44882764	44882864	7077754	0	+	0.46	(0.44,0.476]	chr19	707728	4	SS5_PROX	SS5_PROX:INTRON	NECTIN2	ENSG00000130202.10	ENST00000252483.10:ENST00000592018.1	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	2.58033	3.706175	4.83202	0.0247511	0.00525002	0.131869	0.0633615
chr19	48249122	48249222	7198534	0	-	0.45	(0.44,0.476]	chr19	729696	2	SS5_PROX	SS5_PROX:INTRON	CARD8	ENSG00000105483.18	ENST00000517510.5:ENST00000651546.1:ENST00000518622.5:ENST00000447740.6:ENST00000518979.5:ENST00000519940.6:ENST00000520753.5:ENST00000520153.5:ENST00000522773.5:ENST00000522051.5:ENST00000519646.5:ENST00000520015.5:ENST00000521613.5:ENST00000519302.6:ENST00000522068.5:ENST00000518596.5:ENST00000517778.5:ENST00000521092.5:ENST00000522889.5:ENST00000522431.5:ENST00000519332.5:ENST00000520007.5:ENST00000521437.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	36	2	2.58033	3.706175	4.83202	0.0247511	0.00525002	0.131869	0.0633615
chr9	95229210	95229309	4291152	0	-	0.464646	(0.44,0.476]	chr9	394741	78	INTRON	INTRON	FANCC	ENSG00000158169.14	ENST00000289081.8:ENST00000375305.6:ENST00000649334.1:ENST00000490972.7:ENST00000649701.1:ENST00000696261.1:ENST00000636777.1:ENST00000474949.1:ENST00000647778.1:ENST00000433829.1:ENST00000647882.1:ENST00000649519.1:ENST00000650176.1:ENST00000648415.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	36	2	2.58033	3.706175	4.83202	0.0247511	0.00525002	0.131869	0.0633615
chrX	3928579	3928678	7747883	0	-	0.464646	(0.44,0.476]	chrX	793164	80	INTRON	INTRON	ENSG00000285756	ENSG00000285756.2	ENST00000650538.1	lncRNA	lncRNA	lncRNA	lncRNA	1	36	2	2.58033	3.706175	4.83202	0.0247511	0.00525002	0.131869	0.0633615
chr12	132781214	132781314	5449718	0	-	0.62	(0.57,1]	chr12	522000	3	SS3_PROX	SS3_PROX:INTRON	GOLGA3	ENSG00000090615.16	ENST00000204726.9:ENST00000450791.8:ENST00000693666.1:ENST00000688114.1:ENST00000687190.1:ENST00000690511.1:ENST00000685283.1:ENST00000691696.1:ENST00000691636.1:ENST00000690897.1:ENST00000690465.1:ENST00000456883.7:ENST00000692253.1:ENST00000687502.1:ENST00000688772.1:ENST00000687479.1:ENST00000690709.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	32	2	2.81057	3.7060899999999997	4.60161	0.00169295	0.00142229	0.0381936	0.0340865
chr17	9449375	9449475	6724057	0	-	0.59	(0.57,1]	chr17	659716	116	INTRON	INTRON	STX8	ENSG00000170310.15	ENST00000306357.9:ENST00000575858.5:ENST00000574431.5:ENST00000575294.6:ENST00000574775.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	32	2	2.81057	3.7060899999999997	4.60161	0.00169295	0.00142229	0.0381936	0.0340865
chr6	4825198	4825298	2791350	0	+	0.33	(0.32,0.35]	chr6	263598	480	INTRON	INTRON	CDYL	ENSG00000153046.18	ENST00000328908.9:ENST00000491864.1:ENST00000440139.5:ENST00000483019.1:ENST00000397588.8:ENST00000472453.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	73	2	1.98909	3.70607	5.42305	0.0108865	0.00149027	0.0923273	0.035
chr5	115543783	115543862	2707226	0	-	0.481013	(0.476,0.515]	chr5	254765	1	SS3_PROX	SS3_PROX:INTRON	FEM1C	ENSG00000145780.8	ENST00000274457.5	protein_coding	protein_coding	protein_coding	protein_coding	2	48	2	2.26034	3.7058850000000003	5.15143	0.0166235	0.00166579	0.110511	0.0369207
chr17	57472891	57472990	6634925	0	+	0.515152	(0.476,0.515]	chr17	648057	278	INTRON	INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000674961.1:ENST00000582453.5:ENST00000675656.1:ENST00000322684.7:ENST00000442934.6:ENST00000579180.2:ENST00000579205.5:ENST00000579505.5:ENST00000582772.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	72	2	1.40757	3.70579	6.00401	0.0707852	1.13973e-5	0.184528	0.00249332
chr2	181028614	181028714	936452	0	+	0.26	[0,0.28]	chr2	102627	387	INTRON	INTRON	UBE2E3	ENSG00000170035.16	ENST00000602303.5:ENST00000602959.5:ENST00000602479.5:ENST00000392415.6:ENST00000602291.5:ENST00000410062.9:ENST00000602499.5:ENST00000602710.5:ENST00000602762.5:ENST00000602888.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	60	2	2.20073	3.705635	5.21054	0.0235708	0.00758653	0.128907	0.0749063
chr3	169967884	169967984	1556488	0	+	0.28	[0,0.28]	chr3	161206	1	SS3_PROX	SS3_PROX:INTRON	SEC62	ENSG00000008952.17	ENST00000461933.1:ENST00000460513.5:ENST00000337002.9:ENST00000480708.5:ENST00000487736.5:ENST00000469515.6:ENST00000481435.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	60	2	2.20073	3.705635	5.21054	0.0235708	0.00758653	0.128907	0.0749063
chr7	157353049	157353149	3455461	0	+	0.36	(0.35,0.378]	chr7	323052	126	INTRON	INTRON	DNAJB6	ENSG00000105993.15	ENST00000441561.5:ENST00000429029.6:ENST00000262177.9:ENST00000486083.6:ENST00000417758.5:ENST00000459889.5:ENST00000443280.5:ENST00000488001.5:ENST00000441291.5:ENST00000437030.5:ENST00000412557.5:ENST00000453383.5:ENST00000439402.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	61	2	2.20096	3.70557	5.21018	0.0087123	0.00228003	0.0844834	0.0426265
chr1	77722331	77722399	493758	0	-	0.264706	[0,0.28]	chr1	58390	3	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	USP33	ENSG00000077254.14	ENST00000370794.7:ENST00000370793.5:ENST00000357428.5:ENST00000481579.5:ENST00000370792.7:ENST00000461986.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	60	2	2.10688	3.70556	5.30424	0.0307985	0.00584781	0.143385	0.0667594
chr4	70941522	70941622	1970897	0	+	0.58	(0.57,1]	chr4	197571	386	INTRON	INTRON	MOB1B	ENSG00000173542.9	ENST00000502869.5:ENST00000509041.5:ENST00000309395.7:ENST00000396051.2:ENST00000511449.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	39	2	2.70667	3.70547	4.70427	9.25341e-4	7.21202e-4	0.0278396	0.0245208
chr6	7221482	7221581	2799510	0	+	0.40404	(0.378,0.408]	chr6	263772	25	INTRON	INTRON	RREB1	ENSG00000124782.21	ENST00000379933.7:ENST00000379938.7:ENST00000349384.10:ENST00000334984.10:ENST00000483150.1	protein_coding	protein_coding	protein_coding	protein_coding	5	82	2	1.51701	3.70535	5.89369	0.0404516	2.33849e-5	0.144865	0.00378116
chr15	64640382	64640482	6045889	0	+	0.37	(0.35,0.378]	chr15	575702	170	INTRON	INTRON	ZNF609	ENSG00000180357.10	ENST00000326648.5:ENST00000558680.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	61	2	1.87586	3.705285	5.53471	0.0268864	6.96925e-4	0.135275	0.024224
chr10	22548873	22548971	4578830	0	-	0.479592	(0.476,0.515]	chr10	421973	65	INTRON	INTRON	PIP4K2A	ENSG00000150867.14	ENST00000376573.9:ENST00000323883.11:ENST00000545335.5:ENST00000604912.1	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	2.48527	3.70528	4.92529	0.03496	0.00180221	0.13747500000000001	0.0392772
chr12	119858596	119858696	5432086	0	-	0.48	(0.476,0.515]	chr12	519010	5	INTRON	INTRON	CIT	ENSG00000122966.17	ENST00000392521.7:ENST00000261833.11:ENST00000612548.4	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	2.48527	3.70528	4.92529	0.03496	0.00180221	0.13747500000000001	0.0392772
chr5	54190322	54190422	2619715	0	-	0.42	(0.408,0.44]	chr5	248860	180	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2:ENST00000505630.5:ENST00000505383.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	52	2	2.05947	3.70517	5.35087	0.0333232	3.00323e-4	0.134145	0.0155054
chr7	97148916	97149016	3357273	0	+	0.42	(0.408,0.44]	chr7	313218	57	INTRON	INTRON	SDHAF3	ENSG00000196636.8	ENST00000432641.3:ENST00000360382.4:ENST00000479853.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	52	2	2.05947	3.70517	5.35087	0.0333232	3.00323e-4	0.134145	0.0155054
chr8	102410173	102410273	4012731	0	-	0.39	(0.378,0.408]	chr8	367237	482	INTRON	INTRON	UBR5	ENSG00000104517.13	ENST00000520539.6:ENST00000220959.8:ENST00000521922.5	protein_coding	protein_coding	protein_coding	protein_coding	2	82	2	3.47322	3.70517	3.93712	0.00147803	1.09377e-4	0.0348908	0.00884858
chr10	102279287	102279384	4512982	0	+	0.371134	(0.35,0.378]	chr10	415702	20	INTRON	INTRON	GBF1	ENSG00000107862.7	ENST00000676513.1:ENST00000676939.1:ENST00000677439.1:ENST00000677240.1:ENST00000677618.1:ENST00000679155.1:ENST00000679280.1:ENST00000678036.1:ENST00000678476.1:ENST00000678504.1:ENST00000677247.1:ENST00000677655.1:ENST00000678351.1:ENST00000679238.1:ENST00000677487.1:ENST00000677506.1:ENST00000678666.1:ENST00000676560.1:ENST00000673650.1:ENST00000674034.1:ENST00000369983.5:ENST00000679003.1:ENST00000678486.1:ENST00000676682.1:ENST00000676807.1:ENST00000676993.1:ENST00000678575.1:ENST00000677522.1:ENST00000678293.1:ENST00000679087.1:ENST00000677683.1:ENST00000676861.1:ENST00000677491.1:ENST00000677461.1:ENST00000677871.1:ENST00000677431.1:ENST00000678222.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	38	2	2.48657	3.7050599999999996	4.92355	0.032907	0.00573514	0.145164	0.0657377
chr22	47764572	47764671	7540701	0	+	0.363636	(0.35,0.378]	chr22	770752	37	INTRON	INTRON	ENSG00000224271	ENSG00000224271.7	ENST00000664761.1:ENST00000650683.1:ENST00000651536.1:ENST00000652656.1:ENST00000652072.1:ENST00000651445.1:ENST00000423737.5:ENST00000650660.1:ENST00000651056.1:ENST00000652611.1:ENST00000652399.1:ENST00000652123.1:ENST00000651311.1:ENST00000652505.1:ENST00000652030.2:ENST00000651403.1:ENST00000652228.1:ENST00000651124.1:ENST00000650972.1:ENST00000651985.1:ENST00000651637.1:ENST00000650924.1:ENST00000651003.1:ENST00000651948.2:ENST00000651293.1:ENST00000651939.1:ENST00000650787.1:ENST00000651517.1:ENST00000651662.1:ENST00000651638.1:ENST00000670853.1:ENST00000652080.1:ENST00000651294.1:ENST00000652164.1:ENST00000651538.1:ENST00000651033.1:ENST00000651584.1	lncRNA	lncRNA	lncRNA	lncRNA	1	38	2	2.48657	3.7050599999999996	4.92355	0.032907	0.00573514	0.145164	0.0657377
chr11	87267559	87267659	4845113	0	+	0.22	[0,0.28]	chr11	451868	305	INTRON	INTRON	TMEM135	ENSG00000166575.17	ENST00000340353.11:ENST00000305494.6:ENST00000532959.5:ENST00000525018.5	protein_coding	protein_coding	protein_coding	protein_coding	2	67	2	2.06132	3.7050549999999998	5.34879	0.0408268	0.00157139	0.1451	0.0365659
chr1	31279676	31279776	413118	0	-	0.45	(0.44,0.476]	chr1	49792	78	INTRON	INTRON	SNRNP40	ENSG00000060688.13	ENST00000263694.9:ENST00000489853.1:ENST00000474025.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	48	2	2.44514	3.705025	4.96491	0.0087381	0.0034249	0.0845538	0.0517761
chr1	223817114	223817213	643087	0	-	0.444444	(0.44,0.476]	chr1	75946	24	INTRON	INTRON	TP53BP2	ENSG00000143514.17	ENST00000343537.12:ENST00000391878.6:ENST00000496282.5:ENST00000473135.5:ENST00000465119.1:ENST00000472180.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	48	2	2.44514	3.705025	4.96491	0.0087381	0.0034249	0.0845538	0.0517761
chr22	40178540	40178640	7518190	0	+	0.46	(0.44,0.476]	chr22	768107	4	SS5_PROX	SS5_PROX:INTRON	TNRC6B	ENSG00000100354.21	ENST00000301923.13:ENST00000402203.5:ENST00000454349.7:ENST00000489500.1:ENST00000335727.13	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	48	2	2.44514	3.705025	4.96491	0.0087381	0.0034249	0.0845538	0.0517761
chr12	91560251	91560351	5384819	0	-	0.33	(0.32,0.35]	chr12	513485	530	INTRON	INTRON	ENSG00000289605	ENSG00000289605.1	ENST00000685093.1	lncRNA	lncRNA	lncRNA	lncRNA	1	43	2	2.23182	3.7050199999999998	5.17822	0.068598	0.00115625	0.184298	0.0313436
chr2	54253370	54253467	1120582	0	-	0.278351	[0,0.28]	chr2	120108	3	UTR3	UTR3:EXON_MRNA	TSPYL6	ENSG00000178021.11	ENST00000317802.9	protein_coding	protein_coding	protein_coding	protein_coding	1	49	2	2.20927	3.70499	5.20071	0.0794763	0.00261806	0.19979	0.0470772
chr16	2226901	2226999	6277737	0	+	0.591837	(0.57,1]	chr16	600294	26	INTRON	INTRON	E4F1	ENSG00000167967.16	ENST00000565090.5:ENST00000301727.9:ENST00000564139.5:ENST00000562589.5:ENST00000565413.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	24	2	2.91889	3.70498	4.49107	0.00719009	0.00220544	0.0756118	0.0417893
chr3	128483267	128483359	1813574	0	-	0.48913	(0.476,0.515]	chr3	182217	10	INTRON	INTRON	GATA2	ENSG00000179348.13	ENST00000341105.7:ENST00000696466.1:ENST00000430265.6:ENST00000487848.5	protein_coding	protein_coding	protein_coding	protein_coding	4	126	2	3.30022	3.70489	4.10956	6.69931e-5	3.42965e-5	0.00721005	0.0046762
chr15	74785191	74785290	6063245	0	+	0.464646	(0.44,0.476]	chr15	577307	21	INTRON	INTRON	CSK	ENSG00000103653.17	ENST00000220003.14:ENST00000439220.6:ENST00000563894.1:ENST00000567123.1:ENST00000569462.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	40	2	2.97451	3.70488	4.43525	0.00897296	0.00853825	0.0849778	0.0780043
chr22	36383007	36383107	7585419	0	-	0.47	(0.44,0.476]	chr22	776241	125	INTRON	INTRON	MYH9	ENSG00000100345.23	ENST00000216181.11:ENST00000685801.1:ENST00000692930.1:ENST00000685187.1:ENST00000691687.1:ENST00000685191.1:ENST00000691296.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	40	2	2.97451	3.70488	4.43525	0.00897296	0.00853825	0.0849778	0.0780043
chr2	54988297	54988397	1120782	0	-	0.31	(0.28,0.32]	chr2	120142	2	INTRON	INTRON	RTN4	ENSG00000115310.19	ENST00000394609.6:ENST00000404909.5:ENST00000394611.6:ENST00000317610.11:ENST00000357732.8:ENST00000337526.11:ENST00000357376.7:ENST00000405240.5:ENST00000438462.1	protein_coding	protein_coding	protein_coding	protein_coding	4	78	2	2.06207	3.70486	5.34765	0.00876132	0.00287138	0.0846118	0.0474836
chr2	151423320	151423408	893344	0	+	0.375	(0.35,0.378]	chr2	98907	2	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	RIF1	ENSG00000080345.18	ENST00000453091.6:ENST00000428287.6:ENST00000444746.7:ENST00000243326.9:ENST00000414861.6:ENST00000430328.6:ENST00000498041.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	139	2	2.82068	3.70484	4.589	0.00084924900000000005	2.75107e-6	0.0267232	0.00106457
chr6	107909159	107909253	3182348	0	-	0.468085	(0.44,0.476]	chr6	296427	1	SS3_PROX	SS3_PROX:INTRON	SEC63	ENSG00000025796.14	ENST00000369002.9:ENST00000429168.1	protein_coding	protein_coding	protein_coding	protein_coding	2	48	2	2.21079	3.704795	5.1988	0.0194581	0.00151532	0.119831	0.0352794
chr11	14686641	14686741	4744045	0	+	0.2	[0,0.28]	chr11	439279	412	INTRON	INTRON	PDE3B	ENSG00000152270.9	ENST00000282096.9:ENST00000455098.2:ENST00000534317.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	49	2	2.49527	3.7047049999999997	4.91414	0.0436497	0.0064519	0.14882	0.0730725
chr7	119654768	119654868	3627884	0	-	0.27	[0,0.28]	chr7	337315	1543	INTRON	INTRON	LINC02476	ENSG00000225546.6	ENST00000660268.1	lncRNA	lncRNA	lncRNA	lncRNA	1	49	2	2.49527	3.7047049999999997	4.91414	0.0436497	0.0064519	0.14882	0.0730725
chr10	37855395	37855495	4602577	0	-	0.29	(0.28,0.32]	chr10	423985	169	INTRON	INTRON	ZNF248	ENSG00000198105.16	ENST00000615949.6:ENST00000485560.5:ENST00000395867.8:ENST00000357328.8:ENST00000611278.4:ENST00000374648.7:ENST00000395873.7:ENST00000395874.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	41	2	2.67453	3.704635	4.73474	0.021289	0.0162835	0.123318	0.101453
chr12	49989253	49989345	5322286	0	-	0.304348	(0.28,0.32]	chr12	507306	2	UTR3	UTR3:EXON_MRNA:INTRON	RACGAP1	ENSG00000161800.13	ENST00000548961.5:ENST00000312377.10:ENST00000427314.6:ENST00000454520.6	protein_coding	protein_coding	protein_coding	protein_coding	1	41	2	2.67453	3.704635	4.73474	0.021289	0.0162835	0.123318	0.101453
chr15	75572718	75572818	6225241	0	-	0.29	(0.28,0.32]	chr15	594641	451	INTRON	INTRON	PTPN9	ENSG00000169410.11	ENST00000618819.5	protein_coding	protein_coding	protein_coding	protein_coding	1	41	2	2.67453	3.704635	4.73474	0.021289	0.0162835	0.123318	0.101453
chr5	60973726	60973826	2359505	0	+	0.29	(0.28,0.32]	chr5	227644	279	INTRON	INTRON	NDUFAF2	ENSG00000164182.12	ENST00000678452.1:ENST00000677756.1:ENST00000296597.10:ENST00000511107.1:ENST00000677932.1:ENST00000502658.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	41	2	2.67453	3.704635	4.73474	0.021289	0.0162835	0.123318	0.101453
chrX	13374707	13374803	7622706	0	+	0.302083	(0.28,0.32]	chrX	780361	7	INTRON	INTRON	LINC01203	ENSG00000226985.7	ENST00000669963.1:ENST00000661545.1:ENST00000659526.1:ENST00000656410.1:ENST00000661104.1:ENST00000456091.2:ENST00000655502.1:ENST00000671651.1:ENST00000656979.1:ENST00000656271.1:ENST00000661629.1:ENST00000661464.1:ENST00000668192.1:ENST00000665887.1:ENST00000659191.1:ENST00000667868.1:ENST00000653729.1:ENST00000656111.1:ENST00000667532.1:ENST00000660305.1	lncRNA	lncRNA	lncRNA	lncRNA	1	41	2	2.67453	3.704635	4.73474	0.021289	0.0162835	0.123318	0.101453
chr1	96728283	96728382	168006	0	+	0.313131	(0.28,0.32]	chr1	18215	43	INTRON	INTRON	PTBP2	ENSG00000117569.19	ENST00000482253.5:ENST00000675735.1:ENST00000609116.5:ENST00000674951.1:ENST00000675080.1:ENST00000426398.3:ENST00000460706.5:ENST00000370197.5:ENST00000370198.5:ENST00000476419.5:ENST00000676292.1:ENST00000676096.1:ENST00000675365.1:ENST00000674579.1:ENST00000675401.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	41	2	2.60656	3.704555	4.80255	0.0256827	0.0137406	0.133676	0.0949306
chr4	126470640	126470740	2235415	0	-	0.29	(0.28,0.32]	chr4	219023	51	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	1	41	2	2.60656	3.704555	4.80255	0.0256827	0.0137406	0.133676	0.0949306
chr6	20462259	20462359	2828053	0	+	0.32	(0.28,0.32]	chr6	265583	222	INTRON	INTRON	E2F3	ENSG00000112242.16	ENST00000346618.8:ENST00000535432.2	protein_coding	protein_coding	protein_coding	protein_coding	1	41	2	2.60656	3.704555	4.80255	0.0256827	0.0137406	0.133676	0.0949306
chr8	140855942	140856042	4078610	0	-	0.29	(0.28,0.32]	chr8	370519	89	INTRON	INTRON	PTK2	ENSG00000169398.20	ENST00000696786.1:ENST00000522684.5:ENST00000395218.3:ENST00000519654.5:ENST00000521059.5:ENST00000517887.5:ENST00000519993.5:ENST00000340930.7:ENST00000519419.5:ENST00000524357.5:ENST00000521791.5:ENST00000523067.5:ENST00000520828.5:ENST00000520475.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	41	2	2.60656	3.704555	4.80255	0.0256827	0.0137406	0.133676	0.0949306
chr12	27012921	27013014	5299179	0	-	0.494624	(0.476,0.515]	chr12	504150	3	UTR5	UTR5:EXON_MRNA:INTRON	TM7SF3	ENSG00000064115.11	ENST00000343028.9:ENST00000542667.5:ENST00000535819.1:ENST00000543803.5:ENST00000542019.1:ENST00000539741.5:ENST00000543088.5:ENST00000535423.5:ENST00000512808.2:ENST00000545600.1:ENST00000539399.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	36	2	2.87879	3.70451	4.53023	0.0119748	0.00999149	0.0899583	0.0879541
chr17	29285291	29285391	6747708	0	-	0.5	(0.476,0.515]	chr17	663228	174	INTRON	INTRON	NUFIP2	ENSG00000108256.9	ENST00000225388.9:ENST00000579665.1	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	2.87879	3.70451	4.53023	0.0119748	0.00999149	0.0899583	0.0879541
chr6	68743405	68743505	2887400	0	+	0.35	(0.32,0.35]	chr6	273730	1036	INTRON	INTRON	ADGRB3	ENSG00000135298.15	ENST00000370598.6:ENST00000684661.1:ENST00000546190.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	43	2	2.68921	3.704455	4.7197	0.0230336	0.00568521	0.118056	0.0678837
chr19	58567869	58567968	7218582	0	-	0.323232	(0.32,0.35]	chr19	733429	34	INTRON	INTRON	MZF1	ENSG00000099326.9	ENST00000215057.7:ENST00000594234.5:ENST00000599369.5	protein_coding	protein_coding	protein_coding	protein_coding	4	83	2	1.97378	3.7041899999999996	5.4346	0.0140469	4.09682e-4	0.0959618	0.0181306
chr10	70684964	70685064	4447448	0	+	0.48	(0.476,0.515]	chr10	410366	96	INTRON	INTRON	ADAMTS14	ENSG00000138316.11	ENST00000373207.2:ENST00000373208.5	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	2.56868	3.7041500000000003	4.83962	0.0256676	0.00480934	0.133676	0.0602209
chr5	149753366	149753465	2517283	0	+	0.484848	(0.476,0.515]	chr5	240647	129	INTRON	INTRON	PPARGC1B	ENSG00000155846.17	ENST00000360453.8:ENST00000394320.7:ENST00000461780.1:ENST00000309241.10	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	36	2	2.56868	3.7041500000000003	4.83962	0.0256676	0.00480934	0.133676	0.0602209
chr8	106743311	106743410	3846884	0	+	0.494949	(0.476,0.515]	chr8	354258	6	INTRON	INTRON	OXR1	ENSG00000164830.19	ENST00000517566.7:ENST00000531443.6:ENST00000442977.6:ENST00000435082.1:ENST00000312046.10:ENST00000519415.6:ENST00000449762.6:ENST00000297447.10:ENST00000521592.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	36	2	2.56868	3.7041500000000003	4.83962	0.0256676	0.00480934	0.133676	0.0602209
chr4	126592999	126593099	2236639	0	-	0.31	(0.28,0.32]	chr4	219023	1275	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	7	102	2	1.66573	3.704035	5.7423400000000004	0.01452	7.31742e-4	0.105503	0.0248722
chr10	73059273	73059373	4647465	0	-	0.43	(0.408,0.44]	chr10	427530	53	INTRON	INTRON	P4HA1	ENSG00000122884.13	ENST00000394890.7:ENST00000307116.6:ENST00000373008.6:ENST00000440381.5:ENST00000263556.3	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	2.89193	3.7039850000000003	4.51604	0.0137419	0.00950364	0.0949306	0.0863579
chr12	109458451	109458540	5406967	0	-	0.41573	(0.408,0.44]	chr12	516088	4	UTR5	UTR5:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	KCTD10	ENSG00000110906.13	ENST00000228495.11:ENST00000540089.5:ENST00000440541.6:ENST00000545759.5:ENST00000537165.5:ENST00000538161.5:ENST00000540411.5:ENST00000542954.5:ENST00000535546.5:ENST00000540355.5:ENST00000541077.1:ENST00000542262.5:ENST00000542858.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	36	2	2.89193	3.7039850000000003	4.51604	0.0137419	0.00950364	0.0949306	0.0863579
chr15	28277189	28277288	6123611	0	-	0.424242	(0.408,0.44]	chr15	583381	18	INTRON	INTRON	HERC2	ENSG00000128731.18	ENST00000261609.13:ENST00000564734.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	36	2	2.89193	3.7039850000000003	4.51604	0.0137419	0.00950364	0.0949306	0.0863579
chr4	26861674	26861774	1939721	0	+	0.43	(0.408,0.44]	chr4	194624	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	STIM2	ENSG00000109689.19	ENST00000477474.3:ENST00000494628.6:ENST00000463501.5:ENST00000467011.6:ENST00000467087.7:ENST00000465503.6:ENST00000478049.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	36	2	2.89193	3.7039850000000003	4.51604	0.0137419	0.00950364	0.0949306	0.0863579
chrX	49335358	49335455	7659953	0	+	0.412371	(0.408,0.44]	chrX	784225	16	INTRON	INTRON	GAGE13	ENSG00000274274.2	ENST00000612958.2	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	2.89193	3.7039850000000003	4.51604	0.0137419	0.00950364	0.0949306	0.0863579
chr5	140201947	140202047	2502018	0	+	0.54	(0.515,0.57]	chr5	239136	69	INTRON	INTRON	CYSTM1	ENSG00000120306.11	ENST00000509589.5:ENST00000509789.2:ENST00000504227.5:ENST00000261811.6:ENST00000644078.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	53	2	2.36534	3.7037950000000004	5.04225	0.00404547	0.00131841	0.0578376	0.0331539
chr16	47475859	47475959	6343447	0	+	0.4	(0.378,0.408]	chr16	608849	115	INTRON	INTRON	PHKB	ENSG00000102893.17	ENST00000566037.6:ENST00000566044.5:ENST00000299167.12:ENST00000696809.1:ENST00000323584.10:ENST00000565424.2:ENST00000567402.5:ENST00000563376.5:ENST00000564873.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	210	2	2.74316	3.7037700000000005	4.66438	2.6871e-5	3.95052e-6	0.00408175	0.00143365
chr20	62141044	62141144	7360975	0	-	0.45	(0.44,0.476]	chr20	750752	1	SS3_PROX	SS3_PROX:INTRON	PSMA7	ENSG00000101182.15	ENST00000370873.9:ENST00000484488.5:ENST00000370861.1:ENST00000370858.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	49	2	2.64669	3.703685	4.76068	0.00653414	0.0040295	0.0699952	0.0578376
chr1	109387275	109387375	520913	0	-	0.32	(0.28,0.32]	chr1	61195	173	INTRON	INTRON	SORT1	ENSG00000134243.12	ENST00000538502.5:ENST00000256637.8:ENST00000493736.5:ENST00000482236.5:ENST00000633956.1:ENST00000471996.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	85	2	1.66498	3.70366	5.7423400000000004	0.0244852	7.31742e-4	0.131869	0.0248722
chr6	4789104	4789204	2790989	0	+	0.6	(0.57,1]	chr6	263598	119	INTRON	INTRON	CDYL	ENSG00000153046.18	ENST00000328908.9:ENST00000491864.1:ENST00000440139.5:ENST00000483019.1:ENST00000397588.8:ENST00000472453.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	25	2	2.53383	3.70358	4.87333	0.02547	3.21412e-4	0.12011	0.0159645
chr1	108904753	108904853	179206	0	+	0.36	(0.35,0.378]	chr1	19539	6	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	GPSM2	ENSG00000121957.15	ENST00000406462.6:ENST00000441735.2:ENST00000642355.1:ENST00000645164.2:ENST00000675776.1:ENST00000264126.9:ENST00000676404.1:ENST00000674731.1:ENST00000674914.1:ENST00000674700.1:ENST00000675086.1:ENST00000676184.1:ENST00000675087.1:ENST00000675617.1:ENST00000446797.2:ENST00000643643.1:ENST00000643921.1:ENST00000675740.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	39	2	3.10863	3.70351	4.29839	0.0294717	0.00470896	0.128055	0.0631419
chr19	62700	62798	7108445	0	-	0.571429	(0.57,1]	chr19	713618	7	EXON_MRNA	EXON_MRNA:INTRON	WASH5P	ENSG00000282458.1	ENST00000632506.1:ENST00000633719.1	transcribed_processed_pseudogene	retained_intron	transcribed_processed_pseudogene	retained_intron:processed_transcript	5	80	2	3.11171	3.7035	4.29529	1.56095e-5	4.35224e-6	0.0031803	0.00140234
chr11	66085128	66085227	4808017	0	+	0.212121	[0,0.28]	chr11	447334	5	INTRON	INTRON	PACS1	ENSG00000175115.13	ENST00000320580.9:ENST00000527224.1:ENST00000533756.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	60	2	2.24546	3.70338	5.1613	0.0206502	0.00866441	0.122348	0.0787025
chr2	226926720	226926819	1024581	0	+	0.343434	(0.32,0.35]	chr2	109473	120	INTRON	INTRON	RHBDD1	ENSG00000144468.17	ENST00000341329.7:ENST00000392062.7:ENST00000409053.1:ENST00000491490.5:ENST00000493526.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	39	2	2.71269	3.703245	4.6938	0.0181461	0.0137794	0.114853	0.0949306
chr6	87196233	87196333	2913665	0	+	0.35	(0.32,0.35]	chr6	275281	260	INTRON	INTRON	ZNF292	ENSG00000188994.13	ENST00000369577.8:ENST00000369578.6:ENST00000518845.1:ENST00000339907.8:ENST00000496806.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	39	2	2.71269	3.703245	4.6938	0.0181461	0.0137794	0.114853	0.0949306
chr7	75520513	75520612	3559075	0	-	0.333333	(0.32,0.35]	chr7	331602	39	INTRON	INTRON	PMS2P3	ENSG00000127957.19	ENST00000693762.1:ENST00000394921.8:ENST00000430602.5:ENST00000418756.5:ENST00000437568.6:ENST00000533167.5:ENST00000691440.1:ENST00000422064.1:ENST00000438326.2	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript	1	39	2	2.71269	3.703245	4.6938	0.0181461	0.0137794	0.114853	0.0949306
chr8	90400859	90400959	3794105	0	+	0.32	(0.28,0.32]	chr8	351796	124	INTRON	INTRON	LINC00534	ENSG00000253394.7	ENST00000655523.1:ENST00000658299.1:ENST00000663329.1:ENST00000658342.1:ENST00000655219.1:ENST00000662692.1:ENST00000667296.1:ENST00000667565.1:ENST00000653734.1:ENST00000654785.1:ENST00000524361.5:ENST00000668745.1:ENST00000661519.1:ENST00000671657.1:ENST00000655123.1:ENST00000663098.1:ENST00000670903.1:ENST00000654946.1	lncRNA	lncRNA	lncRNA	lncRNA	2	61	2	2.05458	3.7032350000000003	5.35189	0.0381508	8.52844e-4	0.141764	0.0264928
chr1	50648241	50648341	449127	0	-	0.33	(0.32,0.35]	chr1	54223	414	INTRON	INTRON	FAF1	ENSG00000185104.21	ENST00000396153.7:ENST00000494400.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	39	2	2.64129	3.70315	4.76501	0.0222819	0.0114287	0.124303	0.0886611
chr17	32224025	32224115	6597673	0	+	0.344444	(0.32,0.35]	chr17	641857	8	INTRON	INTRON	RHOT1	ENSG00000126858.19	ENST00000333942.10:ENST00000358365.7:ENST00000583994.5:ENST00000545287.7:ENST00000354266.7:ENST00000581031.5:ENST00000578205.5:ENST00000394692.6:ENST00000580392.5:ENST00000584692.1:ENST00000652713.1:ENST00000584852.1:ENST00000582586.1:ENST00000646284.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	39	2	2.64129	3.70315	4.76501	0.0222819	0.0114287	0.124303	0.0886611
chr17	36578474	36578570	6602197	0	+	0.34375	(0.32,0.35]	chr17	642574	4	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	GGNBP2	ENSG00000278311.5	ENST00000613102.5:ENST00000617860.4:ENST00000618837.4:ENST00000619573.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	39	2	2.64129	3.70315	4.76501	0.0222819	0.0114287	0.124303	0.0886611
chr2	84997738	84997838	820529	0	+	0.35	(0.32,0.35]	chr2	91419	251	INTRON	INTRON	KCMF1	ENSG00000176407.18	ENST00000456682.1:ENST00000409785.9:ENST00000428691.5:ENST00000453448.1	protein_coding	protein_coding	protein_coding	protein_coding	1	39	2	2.64129	3.70315	4.76501	0.0222819	0.0114287	0.124303	0.0886611
chr2	127368569	127368669	1223618	0	-	0.35	(0.32,0.35]	chr2	130286	250	INTRON	INTRON	MAP3K2	ENSG00000169967.17	ENST00000682094.1:ENST00000409947.5	protein_coding	protein_coding	protein_coding	protein_coding	1	39	2	2.64129	3.70315	4.76501	0.0222819	0.0114287	0.124303	0.0886611
chr2	128108850	128108944	862651	0	+	0.329787	(0.32,0.35]	chr2	96680	4	INTRON	INTRON	UGGT1	ENSG00000136731.13	ENST00000259253.11:ENST00000438277.5:ENST00000376723.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	39	2	2.64129	3.70315	4.76501	0.0222819	0.0114287	0.124303	0.0886611
chr12	123748644	123748714	5244460	0	+	0.4	(0.378,0.408]	chr12	498628	2	CDS	CDS:UTR3:EXON_MRNA	ATP6V0A2	ENSG00000185344.15	ENST00000330342.8:ENST00000675344.1:ENST00000540368.6:ENST00000674794.1:ENST00000675260.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	49	2	2.46345	3.702975	4.9425	0.00827342	0.00452675	0.0813266	0.0595107
chr2	111446911	111447011	1211320	0	-	0.38	(0.378,0.408]	chr2	128904	3	SS5_PROX	SS5_PROX:INTRON	MIR4435-2HG	ENSG00000172965.17	ENST00000645030.2:ENST00000642191.1:ENST00000673798.1:ENST00000645051.2:ENST00000673649.1:ENST00000669658.1:ENST00000669917.1:ENST00000661559.1:ENST00000653687.1:ENST00000667670.1:ENST00000609220.2:ENST00000656760.1:ENST00000609902.6:ENST00000666683.1:ENST00000674070.1:ENST00000662335.1:ENST00000664422.1:ENST00000673775.1:ENST00000674092.1:ENST00000673958.1:ENST00000658936.1:ENST00000662635.1:ENST00000666204.1:ENST00000659458.1:ENST00000664443.1:ENST00000670295.1:ENST00000661655.1:ENST00000666390.1:ENST00000659079.1:ENST00000660442.1:ENST00000664009.1:ENST00000439362.6:ENST00000654473.1:ENST00000664999.1:ENST00000673728.1:ENST00000659791.1:ENST00000666144.1:ENST00000659933.1:ENST00000670715.1:ENST00000653568.1:ENST00000643013.1:ENST00000673866.1:ENST00000443467.6:ENST00000669875.1:ENST00000673653.1:ENST00000673988.1:ENST00000661945.1:ENST00000669515.1:ENST00000431385.6:ENST00000656416.1:ENST00000674037.1:ENST00000432818.5:ENST00000674013.1:ENST00000444301.5:ENST00000673964.1:ENST00000673845.1:ENST00000673756.1:ENST00000673960.1:ENST00000673804.1:ENST00000673632.1:ENST00000453478.2:ENST00000673937.1:ENST00000673654.1:ENST00000409569.2:ENST00000674087.1:ENST00000419736.5:ENST00000673840.1:ENST00000674045.1:ENST00000673821.1:ENST00000643766.1:ENST00000308604.5:ENST00000674026.1:ENST00000604981.5:ENST00000673894.1:ENST00000442293.5:ENST00000441075.1	lncRNA	lncRNA	lncRNA	lncRNA	2	49	2	2.46345	3.702975	4.9425	0.00827342	0.00452675	0.0813266	0.0595107
chr16	23961616	23961716	6325017	0	+	0.4	(0.378,0.408]	chr16	605701	679	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000498739.1	protein_coding	protein_coding	protein_coding	protein_coding	2	82	2	3.64419	3.70297	3.76175	7.25777e-4	2.68579e-4	0.0247646	0.0145349
chr1	247320806	247320905	684348	0	-	0.393939	(0.378,0.408]	chr1	80224	71	INTRON	INTRON	ZNF496	ENSG00000162714.13	ENST00000294753.8:ENST00000682384.1:ENST00000461277.2	protein_coding	protein_coding	protein_coding	protein_coding	1	44	2	3.19368	3.7029699999999997	4.21226	0.0177403	0.00426861	0.11319	0.0573912
chr19	2324641	2324741	7115805	0	-	0.7	(0.57,1]	chr19	715314	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	LSM7	ENSG00000130332.15	ENST00000587502.2:ENST00000585409.2:ENST00000252622.15:ENST00000585395.6:ENST00000589532.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	25	2	3.09313	3.7029500000000004	4.31277	0.00369015	0.00346264	0.0539802	0.0535094
chr7	158746401	158746501	3688969	0	-	0.58	(0.57,1]	chr7	342335	23	INTRON	INTRON	ESYT2	ENSG00000117868.18	ENST00000251527.10:ENST00000275418.13:ENST00000652148.1	protein_coding	protein_coding	protein_coding	protein_coding	1	25	2	3.09313	3.7029500000000004	4.31277	0.00369015	0.00346264	0.0539802	0.0535094
chr2	196798490	196798573	1306505	0	-	0.349398	(0.32,0.35]	chr2	136615	2	INTRON	INTRON	GTF3C3	ENSG00000119041.11	ENST00000263956.8:ENST00000651042.1:ENST00000409364.3:ENST00000455546.6:ENST00000451088.6:ENST00000448539.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	41	2	3.13277	3.7028849999999998	4.273	0.0368357	0.00458313	0.138959	0.0622676
chr2	53947720	53947820	1120342	0	-	0.56	(0.515,0.57]	chr2	120090	51	INTRON	INTRON	PSME4	ENSG00000068878.15	ENST00000404125.6:ENST00000389993.7:ENST00000481518.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	35	2	2.34087	3.70273	5.06459	0.0469761	6.03964e-4	0.151917	0.0223465
chr5	57243967	57244067	2358764	0	+	0.36	(0.35,0.378]	chr5	227598	64	INTRON	INTRON	GPBP1	ENSG00000062194.16	ENST00000424459.7:ENST00000514387.6:ENST00000506184.7:ENST00000511209.5:ENST00000264779.6:ENST00000513524.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	72	2	2.24809	3.70266	5.15723	0.00361961	0.00272706	0.0554656	0.0467523
chr6	43577536	43577636	2871488	0	+	0.33	(0.32,0.35]	chr6	272252	7	INTRON	INTRON	POLH	ENSG00000170734.12	ENST00000372236.9:ENST00000372226.1:ENST00000443535.1	protein_coding	protein_coding	protein_coding	protein_coding	1	42	2	3.23331	3.70256	4.17181	0.04531	0.00315414	0.149888	0.0515261
chr10	914497	914597	4542415	0	-	0.52	(0.515,0.57]	chr10	419304	111	INTRON	INTRON	LARP4B	ENSG00000107929.16	ENST00000316157.8:ENST00000690516.1:ENST00000476529.5:ENST00000406525.6:ENST00000481118.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	126	2	2.89064	3.7025550000000003	4.51447	1.33133e-4	2.25115e-6	0.0105133	9.42151e-4
chr15	73623523	73623623	6221081	0	-	0.5	(0.476,0.515]	chr15	593920	236	INTRON	INTRON	NPTN	ENSG00000156642.17	ENST00000351217.10:ENST00000345330.9:ENST00000565325.5:ENST00000562924.5:ENST00000563691.5:ENST00000565282.5:ENST00000564551.1:ENST00000563753.1:ENST00000567198.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	48	2	2.43242	3.7024749999999997	4.97253	0.0091895	0.00311573	0.0855292	0.0498063
chr19	32648197	32648295	7169352	0	-	0.479592	(0.476,0.515]	chr19	724464	12	INTRON	INTRON	ANKRD27	ENSG00000105186.16	ENST00000306065.9:ENST00000587352.5:ENST00000586463.5:ENST00000588700.5:ENST00000586693.7:ENST00000590519.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	48	2	2.43242	3.7024749999999997	4.97253	0.0091895	0.00311573	0.0855292	0.0498063
chr7	127857317	127857417	3404465	0	+	0.5	(0.476,0.515]	chr7	318146	125	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000468166.5:ENST00000465900.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	48	2	2.43242	3.7024749999999997	4.97253	0.0091895	0.00311573	0.0855292	0.0498063
chr2	70228562	70228645	1152263	0	-	0.253012	[0,0.28]	chr2	123089	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	C2orf42:TIA1	ENSG00000115998.8:ENSG00000116001.17	ENST00000470096.1:ENST00000415783.6:ENST00000433529.7:ENST00000282574.8:ENST00000445587.5:ENST00000454815.6:ENST00000416149.6:ENST00000474809.6:ENST00000477044.6:ENST00000361692.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	252	2	2.7667	3.70246	4.63822	1.53411e-4	2.19422e-5	0.0106835	0.00381314
chr1	113797554	113797650	525799	0	-	0.4375	(0.408,0.44]	chr1	61861	3	CDS	CDS:EXON_MRNA	RSBN1	ENSG00000081019.14	ENST00000261441.9:ENST00000612242.4:ENST00000476412.5:ENST00000615321.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	48	2	2.44674	3.702455	4.95817	0.00868283	0.00372419	0.0842798	0.0535094
chr3	171349111	171349211	1866337	0	-	0.37	(0.35,0.378]	chr3	186985	15	INTRON	INTRON	TNIK	ENSG00000154310.17	ENST00000436636.7:ENST00000341852.10:ENST00000284483.12:ENST00000475336.5:ENST00000357327.9:ENST00000460047.5:ENST00000488470.5:ENST00000470834.5:ENST00000465393.1	protein_coding	protein_coding	protein_coding	protein_coding	1	39	2	2.30249	3.702375	5.10226	0.0519726	0.00327038	0.176696	0.0508595
chr4	110179462	110179562	2227543	0	-	0.36	(0.35,0.378]	chr4	218024	735	INTRON	INTRON	ELOVL6	ENSG00000170522.10	ENST00000394607.7:ENST00000302274.8:ENST00000514184.5:ENST00000506625.5:ENST00000506461.1:ENST00000503885.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	159	2	2.71843	3.702345	4.68626	5.87837e-4	1.46465e-6	0.0224695	7.23574e-4
chr3	46956613	46956713	1679829	0	-	0.48	(0.476,0.515]	chr3	171431	152	INTRON	INTRON	CCDC12	ENSG00000160799.12	ENST00000425441.5:ENST00000683445.1:ENST00000292314.6:ENST00000605358.5:ENST00000488069.5:ENST00000603885.5:ENST00000446836.5:ENST00000494655.5:ENST00000604164.5:ENST00000604181.1:ENST00000605875.1:ENST00000460035.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	48	2	2.19809	3.7022700000000004	5.20645	0.020317	0.00136049	0.121522	0.0336321
chr17	82251933	82252027	6852604	0	-	0.43617	(0.408,0.44]	chr17	679133	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CSNK1D	ENSG00000141551.15	ENST00000398519.9:ENST00000314028.11:ENST00000581241.5:ENST00000584377.5:ENST00000392334.6:ENST00000269361.11:ENST00000403276.7:ENST00000581108.5:ENST00000582844.5:ENST00000578904.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	48	2	2.21238	3.7022000000000004	5.19202	0.0193525	0.0016671	0.119831	0.0369207
chr1	214625762	214625861	313768	0	+	0.30303	(0.28,0.32]	chr1	36104	31	INTRON	INTRON	CENPF	ENSG00000117724.14	ENST00000366955.8	protein_coding	protein_coding	protein_coding	protein_coding	1	45	2	2.2609	3.7021550000000003	5.14341	0.0671429	0.00185891	0.183051	0.039946
chr12	62313302	62313401	5150084	0	+	0.30303	(0.28,0.32]	chr12	487313	6	INTRON	INTRON	USP15	ENSG00000135655.16	ENST00000353364.7:ENST00000549523.5:ENST00000550632.5:ENST00000312635.10:ENST00000548524.5:ENST00000280377.10:ENST00000549237.5:ENST00000548836.1:ENST00000546694.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	45	2	2.2609	3.7021550000000003	5.14341	0.0671429	0.00185891	0.183051	0.039946
chr7	73461463	73461558	3554477	0	-	0.305263	(0.28,0.32]	chr7	330747	14	INTRON	INTRON	BAZ1B	ENSG00000009954.11	ENST00000339594.9:ENST00000404251.1	protein_coding	protein_coding	protein_coding	protein_coding	1	45	2	2.2609	3.7021550000000003	5.14341	0.0671429	0.00185891	0.183051	0.039946
chr16	85501089	85501189	6414841	0	+	0.56	(0.515,0.57]	chr16	615465	1418	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	2.90311	3.7020649999999997	4.50102	0.0094233	0.00510768	0.0817766	0.0646039
chr6	154789722	154789822	3002383	0	+	0.54	(0.515,0.57]	chr6	280755	13	INTRON	INTRON	SCAF8	ENSG00000213079.10	ENST00000367186.7:ENST00000417268.3:ENST00000461219.5:ENST00000367178.8:ENST00000464628.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	35	2	2.90311	3.7020649999999997	4.50102	0.0094233	0.00510768	0.0817766	0.0646039
chrX	153461750	153461845	7910313	0	-	0.568421	(0.515,0.57]	chrX	804981	3	UTR3	UTR3:EXON_MRNA:INTRON	HAUS7	ENSG00000213397.12	ENST00000370211.10:ENST00000490165.5:ENST00000490453.5:ENST00000464993.1:ENST00000370210.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	35	2	2.90311	3.7020649999999997	4.50102	0.0094233	0.00510768	0.0817766	0.0646039
chr9	131226577	131226675	4216673	0	+	0.295918	(0.28,0.32]	chr9	386685	33	INTRON	INTRON	NUP214	ENSG00000126883.19	ENST00000695497.1:ENST00000695498.1:ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000524578.6:ENST00000453861.6:ENST00000483497.6:ENST00000695500.1:ENST00000650694.1:ENST00000695501.1:ENST00000530491.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	45	2	2.57195	3.7018	4.83165	0.0331711	0.00527257	0.133994	0.0656295
chr6	17650470	17650566	3065637	0	-	0.40625	(0.378,0.408]	chr6	284818	8	INTRON	INTRON	NUP153	ENSG00000124789.12	ENST00000613258.4:ENST00000537253.5:ENST00000262077.3	protein_coding	protein_coding	protein_coding	protein_coding	1	37	2	2.9917	3.701695	4.41169	0.0199606	0.0068789	0.109608	0.0749442
chr6	35377517	35377617	2852328	0	+	0.4	(0.378,0.408]	chr6	269491	300	INTRON	INTRON	PPARD	ENSG00000112033.14	ENST00000418635.6:ENST00000448077.6:ENST00000360694.8:ENST00000311565.4:ENST00000337400.6	protein_coding	protein_coding	protein_coding	protein_coding	1	37	2	2.9917	3.701695	4.41169	0.0199606	0.0068789	0.109608	0.0749442
chr2	43955088	43955188	1110196	0	-	0.34	(0.32,0.35]	chr2	119070	41	INTRON	INTRON	LRPPRC	ENSG00000138095.20	ENST00000260665.12:ENST00000682308.1:ENST00000683459.1:ENST00000683623.1:ENST00000683125.1:ENST00000683994.1:ENST00000684619.1:ENST00000683833.1:ENST00000682546.1:ENST00000682585.1:ENST00000683220.1:ENST00000683796.1:ENST00000682607.1:ENST00000683590.1:ENST00000684306.1:ENST00000683213.1:ENST00000682779.1:ENST00000682885.1:ENST00000684743.1:ENST00000683346.1:ENST00000683072.1:ENST00000682303.1:ENST00000683329.1:ENST00000682933.1:ENST00000684383.1:ENST00000682480.1:ENST00000684290.1:ENST00000684341.1:ENST00000682595.1:ENST00000683645.1:ENST00000683802.1:ENST00000681961.1:ENST00000683694.1:ENST00000683989.1:ENST00000447246.2:ENST00000409659.6:ENST00000682104.1:ENST00000683934.1:ENST00000681959.1:ENST00000684482.1:ENST00000683082.1:ENST00000467058.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	41	2	2.21917	3.70166	5.18415	0.0641245	0.00333629	0.199279	0.0512081
chr17	59130581	59130680	6802152	0	-	0.414141	(0.408,0.44]	chr17	671849	58	INTRON	INTRON	SKA2	ENSG00000182628.13	ENST00000330137.12:ENST00000580541.1:ENST00000578105.1:ENST00000578519.5:ENST00000583927.1:ENST00000581068.5:ENST00000437036.6:ENST00000583380.5:ENST00000583976.1:ENST00000584089.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	67	2	1.60344	3.701535	5.79963	0.0387506	1.39468e-4	0.160156	0.0107072
chr1	120611961	120612061	535860	0	-	0.29	(0.28,0.32]	chr1	63034	324	INTRON	INTRON	PDE4DIPP2	ENSG00000275131.3	ENST00000612480.2	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	1	41	2	2.73945	3.7015200000000004	4.66359	0.0193496	0.017681	0.11319	0.108861
chr11	87087670	87087769	4843310	0	+	0.313131	(0.28,0.32]	chr11	451850	157	INTRON	INTRON	TMEM135	ENSG00000166575.17	ENST00000340353.11:ENST00000529023.5:ENST00000526733.5:ENST00000305494.6:ENST00000532959.5:ENST00000525018.5:ENST00000531800.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	41	2	2.73945	3.7015200000000004	4.66359	0.0193496	0.017681	0.11319	0.108861
chr6	36537084	36537183	3089278	0	-	0.30303	(0.28,0.32]	chr6	288978	111	INTRON	INTRON	STK38	ENSG00000112079.9	ENST00000229812.8	protein_coding	protein_coding	protein_coding	protein_coding	1	41	2	2.73945	3.7015200000000004	4.66359	0.0193496	0.017681	0.11319	0.108861
chr6	135198607	135198707	2962334	0	+	0.29	(0.28,0.32]	chr6	278621	3	SS3_PROX	SS3_PROX:INTRON	MYB	ENSG00000118513.20	ENST00000341911.10:ENST00000442647.7:ENST00000316528.12:ENST00000616088.4:ENST00000339290.9:ENST00000367812.6:ENST00000463282.6:ENST00000525477.5:ENST00000533837.5:ENST00000367814.8:ENST00000527615.5:ENST00000525369.5:ENST00000438901.6:ENST00000525514.5:ENST00000526320.5:ENST00000526889.5:ENST00000529586.5:ENST00000531519.5:ENST00000533808.5:ENST00000528343.5:ENST00000524588.5:ENST00000525002.5:ENST00000525940.5:ENST00000526187.5:ENST00000526565.5:ENST00000528015.5:ENST00000528140.5:ENST00000528345.5:ENST00000528774.5:ENST00000529262.5:ENST00000531634.5:ENST00000531737.5:ENST00000533384.5:ENST00000533624.5:ENST00000534044.5:ENST00000534121.5:ENST00000531845.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	41	2	2.73945	3.7015200000000004	4.66359	0.0193496	0.017681	0.11319	0.108861
chr8	17942535	17942634	3707932	0	+	0.30303	(0.28,0.32]	chr8	343851	20	INTRON	INTRON	PCM1	ENSG00000078674.19	ENST00000518930.1:ENST00000325083.13:ENST00000517730.5:ENST00000518537.5:ENST00000523055.5:ENST00000519253.5:ENST00000524226.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	41	2	2.73945	3.7015200000000004	4.66359	0.0193496	0.017681	0.11319	0.108861
chrX	111702539	111702638	7702232	0	+	0.313131	(0.28,0.32]	chrX	788221	125	INTRON	INTRON	ALG13	ENSG00000101901.12	ENST00000487141.5:ENST00000394780.8:ENST00000251943.8:ENST00000610588.4:ENST00000621367.4:ENST00000622997.3:ENST00000624161.3:ENST00000636363.1:ENST00000624881.3:ENST00000495283.5:ENST00000486353.5:ENST00000623144.3:ENST00000470971.5:ENST00000623148.3:ENST00000471924.5:ENST00000436609.5:ENST00000470704.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	41	2	2.73945	3.7015200000000004	4.66359	0.0193496	0.017681	0.11319	0.108861
chrX	149962382	149962482	7730513	0	+	0.29	(0.28,0.32]	chrX	791136	4	SS3_PROX	SS3_PROX:INTRON	EOLA2-DT	ENSG00000235703.7	ENST00000670799.1:ENST00000654890.1:ENST00000449111.5:ENST00000444489.5:ENST00000669126.1:ENST00000452864.2:ENST00000671125.1:ENST00000455777.1	lncRNA	lncRNA	lncRNA	lncRNA	1	41	2	2.73945	3.7015200000000004	4.66359	0.0193496	0.017681	0.11319	0.108861
chr6	43569714	43569810	3097273	0	-	0.322917	(0.32,0.35]	chr6	290109	6	INTRON	INTRON	XPO5	ENSG00000124571.18	ENST00000265351.12	protein_coding	protein_coding	protein_coding	protein_coding	1	45	2	3.45772	3.701505	3.94529	0.0693433	0.00128487	0.184298	0.0333518
chr1	39862311	39862411	428059	0	-	0.24	[0,0.28]	chr1	52020	45	INTRON	INTRON	TRIT1	ENSG00000043514.17	ENST00000316891.10:ENST00000648678.1:ENST00000537440.5:ENST00000372818.5:ENST00000462797.5:ENST00000441669.6:ENST00000495175.6:ENST00000491865.5:ENST00000541099.5:ENST00000492612.6:ENST00000489945.5:ENST00000486825.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	45	2	2.8569	3.7015000000000002	4.5461	0.0365918	0.013822	0.138959	0.10247
chr3	149061849	149061947	1840746	0	-	0.27551	[0,0.28]	chr3	185151	6	INTRON	INTRON	HLTF	ENSG00000071794.16	ENST00000310053.10:ENST00000465259.5:ENST00000392912.6:ENST00000494055.5	protein_coding	protein_coding	protein_coding	protein_coding	1	45	2	2.8569	3.7015000000000002	4.5461	0.0365918	0.013822	0.138959	0.10247
chr4	24553734	24553832	2118700	0	-	0.5	(0.476,0.515]	chr4	209230	44	INTRON	INTRON	DHX15	ENSG00000109606.13	ENST00000336812.5	protein_coding	protein_coding	protein_coding	protein_coding	4	71	2	1.50151	3.7014299999999998	5.90135	0.054954	2.02515e-5	0.165463	0.00348937
chr10	21553302	21553400	4404601	0	+	0.418367	(0.408,0.44]	chr10	406433	10	INTRON	INTRON	MLLT10	ENSG00000078403.17	ENST00000651097.1:ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000377100.8:ENST00000377091.7:ENST00000650772.1:ENST00000651298.1:ENST00000652497.1:ENST00000495130.5:ENST00000377059.7:ENST00000621220.4:ENST00000476557.5:ENST00000462999.5:ENST00000430455.2:ENST00000479634.1:ENST00000480415.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	39	2	2.27698	3.70133	5.12568	0.0583528	7.90919e-4	0.167723	0.0258324
chr10	102449953	102450022	4514166	0	+	0.608696	(0.57,1]	chr10	415989	3	EXON_LNCRNA	EXON_LNCRNA	C10orf95-AS1	ENSG00000269609.6	ENST00000473970.3:ENST00000494270.7:ENST00000492465.2:ENST00000663480.1:ENST00000669625.1	lncRNA	lncRNA	lncRNA	lncRNA	7	113	2	3.13736	3.701295	4.26523	4.07997e-6	7.8586e-8	0.00146291	1.21354e-4
chr18	183912	184011	6855083	0	+	0.474747	(0.44,0.476]	chr18	679521	32	INTRON	INTRON	USP14	ENSG00000101557.15	ENST00000582707.5:ENST00000400266.7:ENST00000261601.8:ENST00000578942.5:ENST00000383589.6:ENST00000583119.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	62	2	1.90381	3.701295	5.49878	0.0260626	1.52058e-4	0.122153	0.0106137
chr5	157795949	157796047	2758013	0	-	0.520408	(0.515,0.57]	chr5	260260	11	EXON_MRNA	EXON_MRNA:INTRON	CLINT1	ENSG00000113282.14	ENST00000523094.5:ENST00000411809.7:ENST00000530742.5:ENST00000518855.5:ENST00000523908.5:ENST00000530302.1:ENST00000521615.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	61	2	1.62814	3.701275	5.77441	0.035203	4.92858e-5	0.150193	0.00608708
chr3	197232358	197232458	1902847	0	-	0.29	(0.28,0.32]	chr3	190659	61	INTRON	INTRON	DLG1	ENSG00000075711.21	ENST00000667157.1:ENST00000346964.6:ENST00000663148.1:ENST00000655488.1:ENST00000357674.9:ENST00000671185.1:ENST00000658701.1:ENST00000667104.1:ENST00000661336.1:ENST00000669565.1:ENST00000670455.1:ENST00000656087.1:ENST00000670366.1:ENST00000661453.1:ENST00000665728.1:ENST00000664564.1:ENST00000660432.1:ENST00000660898.1:ENST00000657381.1:ENST00000659221.1:ENST00000654737.1:ENST00000669332.1:ENST00000659716.1:ENST00000664991.1:ENST00000419354.5:ENST00000661440.1:ENST00000667971.1:ENST00000670935.1:ENST00000666007.1:ENST00000661229.1:ENST00000661013.1:ENST00000436682.6:ENST00000662727.1:ENST00000422288.6:ENST00000448528.6:ENST00000656944.1:ENST00000392382.6:ENST00000450955.5:ENST00000658155.1:ENST00000669714.1:ENST00000654733.1:ENST00000419227.5:ENST00000392381.7:ENST00000471733.5:ENST00000419553.6:ENST00000661808.1:ENST00000453607.5:ENST00000456699.6:ENST00000392380.6:ENST00000485409.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	41	2	2.53522	3.701265	4.86731	0.0310424	0.0116253	0.143457	0.0889104
chr7	152173431	152173530	3678610	0	-	0.292929	(0.28,0.32]	chr7	341450	17	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000360104.8:ENST00000262189.11:ENST00000680877.1:ENST00000679560.1:ENST00000683120.1:ENST00000679393.1:ENST00000683200.1:ENST00000684261.1:ENST00000682283.1:ENST00000473186.5:ENST00000679882.1:ENST00000683397.1:ENST00000684307.1:ENST00000683625.1:ENST00000684398.1:ENST00000683670.1:ENST00000680969.1:ENST00000681033.1:ENST00000682176.1:ENST00000683159.1:ENST00000558665.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	41	2	2.53522	3.701265	4.86731	0.0310424	0.0116253	0.143457	0.0889104
chr18	692610	692705	6939572	0	-	0.421053	(0.408,0.44]	chr18	686419	15	EXON_MRNA	EXON_MRNA:INTRON	ENOSF1	ENSG00000132199.20	ENST00000647584.2:ENST00000383578.7:ENST00000584259.6:ENST00000340116.12:ENST00000581475.5:ENST00000580982.5:ENST00000585128.6:ENST00000584453.5:ENST00000578651.5:ENST00000585004.5:ENST00000579053.5:ENST00000583771.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	84	2	3.36378	3.70118	4.03858	0.0016048	1.05823e-4	0.0367961	0.00920724
chr1	193047446	193047546	612749	0	-	0.26	[0,0.28]	chr1	72474	174	INTRON	INTRON	UCHL5	ENSG00000116750.14	ENST00000367455.8:ENST00000367454.6:ENST00000367450.7:ENST00000367451.8:ENST00000367449.5:ENST00000367448.5:ENST00000421683.1	protein_coding	protein_coding	protein_coding	protein_coding	3	73	2	1.66929	3.701025	5.73276	0.0537506	0.00156565	0.180803	0.0360583
chr2	148690957	148691041	892215	0	+	0.404762	(0.378,0.408]	chr2	98788	2	INTRON	INTRON	EPC2	ENSG00000135999.12	ENST00000457184.5:ENST00000258484.11:ENST00000409654.5:ENST00000397424.2:ENST00000449013.1	protein_coding	protein_coding	protein_coding	protein_coding	1	37	2	2.45932	3.70091	4.9425	0.0346754	0.00452675	0.148144	0.0595107
chr20	1388055	1388155	7305325	0	-	0.38	(0.378,0.408]	chr20	743696	100	INTRON	INTRON	FKBP1A	ENSG00000088832.18	ENST00000677937.1:ENST00000439640.5:ENST00000618612.5:ENST00000400137.9:ENST00000678136.1:ENST00000677335.1:ENST00000381719.8:ENST00000678408.1:ENST00000381724.8:ENST00000381715.4:ENST00000678325.1:ENST00000612074.5:ENST00000677078.1:ENST00000677533.1:ENST00000679195.1:ENST00000614856.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	37	2	2.45932	3.70091	4.9425	0.0346754	0.00452675	0.148144	0.0595107
chrX	113814899	113814999	7866188	0	-	0.39	(0.378,0.408]	chrX	801544	1987	EXON_LNCRNA	EXON_LNCRNA:INTRON	XACT	ENSG00000241743.4	ENST00000468762.3:ENST00000674361.1	lncRNA	lncRNA	lncRNA	lncRNA	1	37	2	2.45932	3.70091	4.9425	0.0346754	0.00452675	0.148144	0.0595107
chr11	118459769	118459869	4872354	0	+	0.56	(0.515,0.57]	chr11	454987	99	INTRON	INTRON	ENSG00000285827:KMT2A	ENSG00000285827.1:ENSG00000118058.24	ENST00000648261.1:ENST00000389506.10:ENST00000534358.8:ENST00000533790.3:ENST00000527869.7:ENST00000649690.2:ENST00000691053.1:ENST00000531904.6:ENST00000649699.1:ENST00000648029.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	33	2	2.98677	3.700875	4.41498	0.0106866	0.00632549	0.0861859	0.0722266
chr3	100301469	100301566	1465985	0	+	0.268041	[0,0.28]	chr3	153645	18	INTRON	INTRON	TBC1D23	ENSG00000036054.13	ENST00000394144.9:ENST00000344949.9:ENST00000486274.5:ENST00000475134.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	45	2	2.29142	3.700875	5.11033	0.0592143	0.00991388	0.189982	0.0838372
chr9	112104328	112104428	4316064	0	-	0.2	[0,0.28]	chr9	396943	2	SS5_PROX	SS5_PROX:INTRON	SUSD1	ENSG00000106868.17	ENST00000374270.8:ENST00000374263.7:ENST00000355396.7:ENST00000374264.6:ENST00000529933.5:ENST00000415074.1:ENST00000528773.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	45	2	2.29142	3.700875	5.11033	0.0592143	0.00991388	0.189982	0.0838372
chr1	1762535	1762634	361576	0	-	0.515152	(0.476,0.515]	chr1	42211	1	INTRON	INTRON	NADK	ENSG00000008130.15	ENST00000378625.5:ENST00000341991.7:ENST00000341426.9:ENST00000492845.6:ENST00000492768.5:ENST00000460602.5:ENST00000464373.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	51	2	2.10874	3.700775	5.29281	0.0285608	4.07635e-4	0.12666	0.0181306
chr8	129524673	129524773	4060529	0	-	0.29	(0.28,0.32]	chr8	369648	141	INTRON	INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1:ENST00000676273.1:ENST00000667643.1:ENST00000668791.1:ENST00000663716.1:ENST00000663572.1:ENST00000676148.1:ENST00000667962.1:ENST00000674877.1:ENST00000675316.1:ENST00000674656.1:ENST00000446592.7:ENST00000667341.1:ENST00000675186.1:ENST00000652971.1:ENST00000661447.1:ENST00000674863.1:ENST00000675498.1:ENST00000675527.1:ENST00000676108.1:ENST00000657647.1:ENST00000675589.1:ENST00000675913.1:ENST00000675109.1:ENST00000671632.1:ENST00000671311.1:ENST00000676099.1:ENST00000660652.1:ENST00000675522.1:ENST00000675183.1:ENST00000658861.1:ENST00000663991.1:ENST00000675044.1:ENST00000675435.1:ENST00000674639.1:ENST00000676069.1:ENST00000675532.1:ENST00000674762.1:ENST00000523151.6:ENST00000675948.1:ENST00000665364.1:ENST00000657251.1:ENST00000675166.1:ENST00000674883.1:ENST00000675867.1:ENST00000674580.1:ENST00000675393.1:ENST00000520048.1:ENST00000674906.1:ENST00000676030.1:ENST00000670588.1:ENST00000675072.1:ENST00000664936.1:ENST00000652914.1:ENST00000657069.1	lncRNA	lncRNA	lncRNA	lncRNA	2	100	2	3.616	3.7006750000000004	3.78535	7.42427e-4	6.21154e-4	0.024913	0.0229151
chr17	49030610	49030710	6624941	0	+	0.43	(0.408,0.44]	chr17	646614	37	INTRON	INTRON	IGF2BP1	ENSG00000159217.10	ENST00000290341.8:ENST00000431824.2:ENST00000515586.5:ENST00000499130.6:ENST00000505562.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	39	2	2.78122	3.7006550000000002	4.62009	0.015812	0.00504155	0.101453	0.0646039
chr2	167902878	167902978	1258831	0	-	0.49	(0.476,0.515]	chr2	133340	17	INTRON	INTRON	B3GALT1-AS1	ENSG00000235335.3	ENST00000430546.2:ENST00000657553.1:ENST00000670221.1:ENST00000436982.2	lncRNA	lncRNA	lncRNA	lncRNA	2	49	2	1.99341	3.70055	5.40769	0.037389	6.23078e-4	0.155878	0.0229151
chr21	44085916	44086012	7415788	0	+	0.427083	(0.408,0.44]	chr21	755871	13	INTRON	INTRON	TRAPPC10	ENSG00000160218.13	ENST00000291574.9:ENST00000422875.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	49	2	2.00768	3.7004400000000004	5.3932	0.035843	7.81492e-4	0.152216	0.0257168
chr12	91630612	91630712	5385523	0	-	0.29	(0.28,0.32]	chr12	513485	1234	INTRON	INTRON	ENSG00000289605	ENSG00000289605.1	ENST00000685093.1	lncRNA	lncRNA	lncRNA	lncRNA	2	61	2	1.86684	3.70043	5.53402	0.0605813	4.0843e-4	0.171122	0.0181306
chr19	12632246	12632346	7021866	0	+	0.32	(0.28,0.32]	chr19	698093	31	UTR3	UTR3:EXON_MRNA	ZNF791	ENSG00000173875.14	ENST00000446165.2:ENST00000343325.9	protein_coding	protein_coding	protein_coding	protein_coding	2	61	2	1.86684	3.70043	5.53402	0.0605813	4.0843e-4	0.171122	0.0181306
chr12	120181210	120181307	5433120	0	-	0.515464	(0.515,0.57]	chr12	519319	19	INTRON	INTRON	GCN1	ENSG00000089154.11	ENST00000300648.7	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	2.56306	3.7003500000000003	4.83764	0.0247751	0.00279527	0.131869	0.0469265
chr9	125620201	125620301	4354350	0	-	0.53	(0.515,0.57]	chr9	399701	199	INTRON	INTRON	MAPKAP1	ENSG00000119487.17	ENST00000373511.6:ENST00000394063.5:ENST00000373503.7:ENST00000265960.8:ENST00000350766.7:ENST00000373498.5:ENST00000420643.5:ENST00000473837.5:ENST00000394060.7:ENST00000427078.5:ENST00000468896.1:ENST00000448439.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	33	2	2.56306	3.7003500000000003	4.83764	0.0247751	0.00279527	0.131869	0.0469265
chr21	44061456	44061556	7415530	0	+	0.59	(0.57,1]	chr21	755816	13	INTRON	INTRON	TRAPPC10	ENSG00000160218.13	ENST00000291574.9:ENST00000422875.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	24	2	2.79889	3.70025	4.60161	0.0110274	0.00142229	0.0927187	0.0340865
chr6	15335322	15335422	2823840	0	+	0.6	(0.57,1]	chr6	265192	204	INTRON	INTRON	JARID2	ENSG00000008083.14	ENST00000341776.7:ENST00000397311.4	protein_coding	protein_coding	protein_coding	protein_coding	1	24	2	2.79889	3.70025	4.60161	0.0110274	0.00142229	0.0927187	0.0340865
chr16	21519027	21519127	6461547	0	-	0.44	(0.408,0.44]	chr16	623383	125	INTRON	INTRON	SMG1P3	ENSG00000180747.15	ENST00000522841.6:ENST00000437413.2:ENST00000435197.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	6	194	2	3.52257	3.700055	3.87754	1.25094e-5	1.97835e-6	0.00281284	8.55184e-4
chr1	111125750	111125844	522333	0	-	0.308511	(0.28,0.32]	chr1	61403	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DRAM2	ENSG00000156171.15	ENST00000484310.6:ENST00000539140.6:ENST00000286692.8:ENST00000461449.5:ENST00000496430.6:ENST00000480600.6:ENST00000490780.5:ENST00000463682.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	42	2	2.97333	3.699815	4.4263	0.0330296	0.00857834	0.133816	0.083729
chr2	61373473	61373572	1129571	0	-	0.282828	(0.28,0.32]	chr2	121456	25	INTRON	INTRON	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000453133.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	42	2	2.97333	3.699815	4.4263	0.0330296	0.00857834	0.133816	0.083729
chr1	224945389	224945489	322509	0	+	0.35	(0.32,0.35]	chr1	37105	152	INTRON	INTRON	DNAH14	ENSG00000185842.16	ENST00000445597.6:ENST00000430092.5:ENST00000366850.7:ENST00000400952.7:ENST00000682510.1:ENST00000366849.5:ENST00000498360.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	39	2	2.78073	3.6998100000000003	4.61889	0.0166646	0.01481	0.106702	0.102621
chr19	5063128	5063228	7004365	0	+	0.33	(0.32,0.35]	chr19	694835	151	INTRON	INTRON	KDM4B	ENSG00000127663.15	ENST00000159111.9:ENST00000611640.4:ENST00000381759.8:ENST00000536461.5:ENST00000592175.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	39	2	2.78073	3.6998100000000003	4.61889	0.0166646	0.01481	0.106702	0.102621
chr21	28974935	28975034	7436513	0	-	0.333333	(0.32,0.35]	chr21	758418	31	INTRON	INTRON	LTN1	ENSG00000198862.14	ENST00000614971.4:ENST00000389194.7:ENST00000361371.10:ENST00000389195.7:ENST00000483326.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	39	2	2.78073	3.6998100000000003	4.61889	0.0166646	0.01481	0.106702	0.102621
chr1	15916479	15916579	35356	0	+	0.35	(0.32,0.35]	chr1	4289	2	SS5_PROX	SS5_PROX:INTRON	SPEN	ENSG00000065526.12	ENST00000673875.1:ENST00000375759.8:ENST00000442985.1	protein_coding	protein_coding	protein_coding	protein_coding	3	63	2	1.97654	3.699795	5.42305	0.0199113	0.00149027	0.120668	0.035
chr9	130613427	130613527	4213435	0	+	0.48	(0.476,0.515]	chr9	386295	4	SS5_PROX	SS5_PROX:INTRON	FUBP3	ENSG00000107164.16	ENST00000319725.10:ENST00000650723.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	38	2	2.40608	3.6997500000000003	4.99342	0.0425709	0.00139274	0.148082	0.0341261
chr1	109552637	109552737	180200	0	+	0.23	[0,0.28]	chr1	19792	34	INTRON	INTRON	GNAI3	ENSG00000065135.12	ENST00000369851.7	protein_coding	protein_coding	protein_coding	protein_coding	1	50	2	2.68918	3.699675	4.71017	0.0275571	0.0114708	0.123904	0.0956037
chr1	168051233	168051333	249656	0	+	0.28	[0,0.28]	chr1	29647	3	SS5_PROX	SS5_PROX:INTRON	DCAF6	ENSG00000143164.16	ENST00000432587.6:ENST00000367843.7:ENST00000367840.4:ENST00000312263.10:ENST00000489398.1:ENST00000478668.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	50	2	2.68918	3.699675	4.71017	0.0275571	0.0114708	0.123904	0.0956037
chr1	173964687	173964738	587456	0	-	0.27451	[0,0.28]	chr1	70705	1	SS5_PROX	SS5_PROX:INTRON	RC3H1	ENSG00000135870.12	ENST00000367696.7:ENST00000258349.8:ENST00000367694.2	protein_coding	protein_coding	protein_coding	protein_coding	1	50	2	2.68918	3.699675	4.71017	0.0275571	0.0114708	0.123904	0.0956037
chr8	140719800	140719897	4077215	0	-	0.536082	(0.515,0.57]	chr8	370377	12	INTRON	INTRON	PTK2	ENSG00000169398.20	ENST00000696786.1:ENST00000522684.5:ENST00000395218.3:ENST00000519654.5:ENST00000521059.5:ENST00000517887.5:ENST00000519465.5:ENST00000519993.5:ENST00000340930.7:ENST00000523539.5:ENST00000519419.5:ENST00000524202.5:ENST00000521986.5:ENST00000522424.5:ENST00000521250.5:ENST00000521981.5:ENST00000521029.5:ENST00000518509.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	35	2	3.31388	3.69963	4.08538	0.0253843	0.00174704	0.12011	0.0386026
chr1	25433376	25433475	47971	0	+	0.333333	(0.32,0.35]	chr1	5919	18	INTRON	INTRON	MACO1	ENSG00000204178.11	ENST00000399766.7:ENST00000374343.5:ENST00000647928.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	39	2	2.56618	3.699525	4.83287	0.0274185	0.0095071	0.136498	0.0817766
chr1	32024624	32024724	62750	0	+	0.34	(0.32,0.35]	chr1	7939	99	INTRON	INTRON	KHDRBS1	ENSG00000121774.18	ENST00000327300.12:ENST00000307714.12:ENST00000492989.1:ENST00000484270.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	39	2	2.56618	3.699525	4.83287	0.0274185	0.0095071	0.136498	0.0817766
chr12	113360580	113360679	5232363	0	+	0.343434	(0.32,0.35]	chr12	496272	13	INTRON	INTRON	PLBD2	ENSG00000151176.8	ENST00000545182.6:ENST00000280800.5:ENST00000548997.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	39	2	2.56618	3.699525	4.83287	0.0274185	0.0095071	0.136498	0.0817766
chr6	34620202	34620302	3085452	0	-	0.34	(0.32,0.35]	chr6	288679	129	INTRON	INTRON	ILRUN	ENSG00000196821.10	ENST00000374026.7:ENST00000374023.8:ENST00000374021.1	protein_coding	protein_coding	protein_coding	protein_coding	1	39	2	2.56618	3.699525	4.83287	0.0274185	0.0095071	0.136498	0.0817766
chr8	70278953	70279053	3965584	0	-	0.34	(0.32,0.35]	chr8	363891	337	INTRON	INTRON	NCOA2	ENSG00000140396.13	ENST00000452400.7:ENST00000518287.6:ENST00000520416.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	39	2	2.56618	3.699525	4.83287	0.0274185	0.0095071	0.136498	0.0817766
chr8	89743435	89743535	3985139	0	-	0.33	(0.32,0.35]	chr8	364998	174	INTRON	INTRON	RIPK2-DT	ENSG00000251136.10	ENST00000688654.1:ENST00000690564.1:ENST00000661105.1:ENST00000685145.1:ENST00000519655.6:ENST00000656898.2:ENST00000685787.1:ENST00000693018.1:ENST00000691313.1:ENST00000691446.1:ENST00000524190.2:ENST00000691897.1:ENST00000685988.1:ENST00000691595.1:ENST00000688855.1:ENST00000504145.6:ENST00000685619.1:ENST00000653574.1:ENST00000687824.1:ENST00000521996.2:ENST00000692782.1:ENST00000655144.2:ENST00000687204.1:ENST00000689241.1:ENST00000686009.1:ENST00000685448.1	lncRNA	lncRNA	lncRNA	lncRNA	1	39	2	2.56618	3.699525	4.83287	0.0274185	0.0095071	0.136498	0.0817766
chr6	35887381	35887452	3088480	0	-	0.309859	(0.28,0.32]	chr6	288866	2	INTRON	INTRON	SRPK1	ENSG00000096063.16	ENST00000373825.7:ENST00000423325.6:ENST00000346162.10:ENST00000361690.7:ENST00000510290.5:ENST00000373821.6:ENST00000508473.5:ENST00000512445.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	69	2	2.35314	3.699465	5.04579	0.00714672	0.00539714	0.0723634	0.066545000000000007
chr10	26809338	26809438	4583983	0	-	0.49	(0.476,0.515]	chr10	422397	317	INTRON	INTRON	ABI1	ENSG00000136754.18	ENST00000376138.7:ENST00000376166.5:ENST00000376160.5:ENST00000376139.6:ENST00000376142.6:ENST00000359188.8:ENST00000376170.8:ENST00000536334.5:ENST00000490841.6:ENST00000376137.8:ENST00000376140.4:ENST00000346832.10:ENST00000473481.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	38	2	2.69967	3.6994249999999997	4.69918	0.0195838	0.00400966	0.109483	0.057767
chr12	50514735	50514835	5137247	0	+	0.51	(0.476,0.515]	chr12	484468	91	INTRON	INTRON	DIP2B	ENSG00000066084.13	ENST00000301180.10:ENST00000549620.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	38	2	2.69967	3.6994249999999997	4.69918	0.0195838	0.00400966	0.109483	0.057767
chr2	10305337	10305437	691652	0	+	0.38	(0.378,0.408]	chr2	81125	10	INTRON	INTRON	HPCAL1	ENSG00000115756.13	ENST00000423674.5:ENST00000307845.8:ENST00000381765.7	protein_coding	protein_coding	protein_coding	protein_coding	1	40	2	2.2259	3.699355	5.17281	0.0662381	7.27294e-4	0.181924	0.0245647
chr5	39049622	39049721	2605400	0	-	0.393939	(0.378,0.408]	chr5	247896	281	INTRON	INTRON	RICTOR	ENSG00000164327.13	ENST00000357387.8:ENST00000511516.5:ENST00000296782.9:ENST00000510711.5:ENST00000513566.1:ENST00000514735.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	40	2	2.2259	3.699355	5.17281	0.0662381	7.27294e-4	0.181924	0.0245647
chr16	15698806	15698903	6307383	0	+	0.360825	(0.35,0.378]	chr16	603472	16	INTRON	INTRON	NDE1	ENSG00000072864.16	ENST00000396355.5:ENST00000674888.1:ENST00000675171.1:ENST00000675951.1:ENST00000674900.1:ENST00000674588.1:ENST00000674538.1:ENST00000396354.6:ENST00000675926.1:ENST00000674995.1:ENST00000674554.1:ENST00000674581.1:ENST00000577101.6:ENST00000572756.6:ENST00000574109.5:ENST00000573694.5:ENST00000576502.5:ENST00000572967.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	52	2	2.67874	3.699135	4.71953	0.0103314	0.00373022	0.0850389	0.0561984
chr1	51764829	51764927	100893	0	+	0.44898	(0.44,0.476]	chr1	13345	25	INTRON	INTRON	OSBPL9	ENSG00000117859.19	ENST00000371714.5:ENST00000428468.6:ENST00000447887.5:ENST00000495776.5:ENST00000435274.6:ENST00000453295.5:ENST00000489990.5:ENST00000532975.5:ENST00000531828.5:ENST00000361556.9:ENST00000526917.5:ENST00000462759.5:ENST00000486942.5:ENST00000528603.5:ENST00000475697.5:ENST00000531061.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	48	2	2.49823	3.699115	4.9	0.00718224	0.00423315	0.0756118	0.0572185
chr3	185797867	185797966	1886077	0	-	0.444444	(0.44,0.476]	chr3	188573	992	INTRON	INTRON	IGF2BP2	ENSG00000073792.16	ENST00000382199.7:ENST00000346192.7:ENST00000457616.6:ENST00000421047.3:ENST00000461957.5:ENST00000493302.5:ENST00000466476.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	48	2	2.49823	3.699115	4.9	0.00718224	0.00423315	0.0756118	0.0572185
chr19	11133436	11133532	7017285	0	+	0.3125	(0.28,0.32]	chr19	697523	21	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	LDLR	ENSG00000130164.14	ENST00000558518.6:ENST00000252444.9:ENST00000560628.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	42	2	2.29724	3.6989650000000003	5.10069	0.0554156	0.00610574	0.18407	0.0676501
chr22	32482123	32482221	7507793	0	+	0.285714	(0.28,0.32]	chr22	766228	25	INTRON	INTRON	FBXO7	ENSG00000100225.18	ENST00000420700.5:ENST00000425028.5:ENST00000266087.12:ENST00000492535.1:ENST00000452138.3:ENST00000397426.5:ENST00000444207.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	57	2	2.59504	3.698795	4.80255	0.0137406	0.00582473	0.0949306	0.0687439
chr10	42350041	42350141	4603274	0	-	0.28	[0,0.28]	chr10	424077	91	INTRON	INTRON	ENSG00000215146	ENSG00000215146.5	ENST00000609841.1:ENST00000650175.1:ENST00000423987.2:ENST00000609034.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	2	115	2	3.51361	3.698785	3.88396	0.00142208	5.89515e-4	0.0346633	0.0225024
chr6	147663911	147664010	2990634	0	+	0.282828	(0.28,0.32]	chr6	280159	27	INTRON	INTRON	ENSG00000227681	ENSG00000227681.5	ENST00000427015.1:ENST00000432506.5	lncRNA	lncRNA	lncRNA	lncRNA	7	100	2	1.26409	3.6986299999999996	6.13317	0.0570949	1.54938e-4	0.186331	0.0113252
chr12	69589241	69589322	5165416	0	+	0.432099	(0.408,0.44]	chr12	489239	2	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	CCT2	ENSG00000166226.13	ENST00000299300.11:ENST00000551620.5:ENST00000544368.6:ENST00000550010.5:ENST00000543146.2:ENST00000548787.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	142	2	3.67288	3.69862	3.72436	4.02484e-5	1.56427e-5	0.00539487	0.00298427
chr15	87670577	87670677	6256260	0	-	0.38	(0.378,0.408]	chr15	596826	1272	INTRON	INTRON	ENSG00000259560	ENSG00000259560.2	ENST00000665121.1:ENST00000560439.1	lncRNA	lncRNA	lncRNA	lncRNA	1	40	2	2.78946	3.698585	4.60771	0.0158859	0.00567576	0.101453	0.0678837
chr21	32763947	32764047	7440401	0	-	0.38	(0.378,0.408]	chr21	759285	2	SS5_PROX	SS5_PROX:INTRON	PAXBP1	ENSG00000159086.15	ENST00000331923.9:ENST00000443785.5:ENST00000290178.4:ENST00000472588.5:ENST00000464256.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	40	2	2.78946	3.698585	4.60771	0.0158859	0.00567576	0.101453	0.0678837
chr9	127493485	127493583	4200750	0	+	0.387755	(0.378,0.408]	chr9	383575	7	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	LRSAM1	ENSG00000148356.15	ENST00000675224.1:ENST00000373324.8:ENST00000674771.1:ENST00000675641.1:ENST00000498513.6:ENST00000675572.1:ENST00000300417.11:ENST00000674784.1:ENST00000675789.1:ENST00000676349.1:ENST00000676336.1:ENST00000676170.1:ENST00000675448.1:ENST00000323301.8:ENST00000675141.1:ENST00000472068.2:ENST00000674516.1:ENST00000675883.1:ENST00000676014.1:ENST00000674970.1:ENST00000675253.1:ENST00000675657.1:ENST00000676318.1:ENST00000675945.1:ENST00000675213.1:ENST00000373322.1:ENST00000675445.1:ENST00000674621.1:ENST00000675198.1:ENST00000676399.1:ENST00000675662.1:ENST00000676137.1:ENST00000675012.1:ENST00000674511.1:ENST00000676409.1:ENST00000675521.1:ENST00000676106.1:ENST00000676035.1:ENST00000483302.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	53	2	2.11194	3.698575	5.28521	0.0292534	4.52877e-4	0.128055	0.0192381
chr2	241748426	241748526	1056444	0	+	0.58	(0.57,1]	chr2	112661	2	SS3_PROX	SS3_PROX:INTRON	D2HGDH	ENSG00000180902.18	ENST00000403782.5:ENST00000436747.5:ENST00000321264.9:ENST00000400769.6:ENST00000437164.1:ENST00000454048.1:ENST00000417686.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	96	2	2.82067	3.698565	4.57646	1.94641e-5	5.08048e-7	0.00357688	3.80889e-4
chr2	64008161	64008261	1139901	0	-	0.49	(0.476,0.515]	chr2	122046	238	INTRON	INTRON	VPS54	ENSG00000143952.20	ENST00000409558.8:ENST00000272322.9	protein_coding	protein_coding	protein_coding	protein_coding	2	53	2	1.72558	3.69836	5.67114	0.0767648	6.83906e-5	0.196164	0.00684369
chr16	66562971	66563071	6364875	0	+	0.39	(0.378,0.408]	chr16	611236	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	CKLF	ENSG00000217555.13	ENST00000534692.1:ENST00000345436.8:ENST00000351137.8:ENST00000362093.4:ENST00000264001.9:ENST00000417030.2:ENST00000563092.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	50	2	2.65815	3.69827	4.73839	0.00837252	0.00391167	0.0774402	0.0569957
chr3	139380906	139381006	1832081	0	-	0.39	(0.378,0.408]	chr3	184170	10	EXON_MRNA	EXON_MRNA:INTRON	COPB2	ENSG00000184432.11	ENST00000503326.6:ENST00000677882.1:ENST00000677601.1:ENST00000677309.1:ENST00000677073.1:ENST00000512242.6:ENST00000507777.6:ENST00000514508.2:ENST00000333188.10:ENST00000510181.6:ENST00000512309.2:ENST00000515006.5:ENST00000512153.5:ENST00000513274.5:ENST00000510491.5:ENST00000504295.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	50	2	2.65815	3.69827	4.73839	0.00837252	0.00391167	0.0774402	0.0569957
chr9	135879332	135879432	4371985	0	-	0.39	(0.378,0.408]	chr9	402479	124	INTRON	INTRON	CAMSAP1	ENSG00000130559.19	ENST00000389532.9:ENST00000312405.10:ENST00000409386.3:ENST00000468150.1:ENST00000460094.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	50	2	2.65815	3.69827	4.73839	0.00837252	0.00391167	0.0774402	0.0569957
chr2	182949434	182949533	1285113	0	-	0.363636	(0.35,0.378]	chr2	135311	24	INTRON	INTRON	NCKAP1	ENSG00000061676.15	ENST00000361354.9:ENST00000360982.2	protein_coding	protein_coding	protein_coding	protein_coding	2	56	2	1.75561	3.6981349999999997	5.64066	0.0739399	1.14247e-4	0.190914	0.0091431
chr1	63453765	63453841	470984	0	-	0.342105	(0.32,0.35]	chr1	56958	3	EXON_LNCRNA	EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ITGB3BP	ENSG00000142856.17	ENST00000271002.15:ENST00000489099.5:ENST00000371092.7:ENST00000461681.5:ENST00000463803.5:ENST00000476508.5:ENST00000460394.5:ENST00000462285.5:ENST00000489863.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	53	2	2.01768	3.698005	5.37833	0.0361337	0.00174321	0.152563	0.0375363
chr6	149730526	149730624	3246805	0	-	0.336735	(0.32,0.35]	chr6	301671	30	INTRON	INTRON	NUP43	ENSG00000120253.14	ENST00000340413.7:ENST00000367404.8	protein_coding	protein_coding	protein_coding	protein_coding	2	91	2	3.63897	3.6979550000000003	3.75694	9.34231e-4	3.37248e-4	0.0280484	0.0163178
chr7	148732565	148732664	3444027	0	+	0.525253	(0.515,0.57]	chr7	321178	19	INTRON	INTRON	CUL1	ENSG00000055130.18	ENST00000409469.5:ENST00000662716.1:ENST00000665936.1:ENST00000663044.1:ENST00000602748.5:ENST00000663835.1:ENST00000655324.1:ENST00000662132.1:ENST00000325222.9:ENST00000656001.1:ENST00000666124.1:ENST00000671421.1:ENST00000671397.1:ENST00000662670.1:ENST00000660240.1:ENST00000662975.1:ENST00000660013.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	34	2	3.19178	3.697795	4.20381	0.0189208	0.00289534	0.108861	0.0494641
chr14	20314385	20314473	5832954	0	-	0.352273	(0.35,0.378]	chr14	553911	3	UTR3	UTR3:EXON_MRNA:INTRON	CCNB1IP1	ENSG00000100814.18	ENST00000353689.8:ENST00000437553.6:ENST00000398160.6:ENST00000358932.9:ENST00000398169.7:ENST00000398163.6:ENST00000554184.5:ENST00000556854.5:ENST00000557665.5:ENST00000554047.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	41	2	2.24535	3.697755	5.15016	0.0647516	9.78549e-4	0.179192	0.0287765
chr15	30665006	30665106	5992671	0	+	0.36	(0.35,0.378]	chr15	569767	58	INTRON	INTRON	ENSG00000284906:ENSG00000285035:ENSG00000187951	ENSG00000284906.3:ENSG00000285035.2:ENSG00000187951.11	ENST00000685924.1:ENST00000563110.6:ENST00000566548.5:ENST00000602616.6:ENST00000562954.1	protein_coding	protein_coding	protein_coding:lncRNA:transcribed_unprocessed_pseudogene	protein_coding:nonsense_mediated_decay:lncRNA:processed_transcript	1	41	2	2.24535	3.697755	5.15016	0.0647516	9.78549e-4	0.179192	0.0287765
chr1	202785892	202785992	620525	0	-	0.37	(0.35,0.378]	chr1	73670	84	INTRON	INTRON	KDM5B	ENSG00000117139.18	ENST00000367265.9:ENST00000648338.1:ENST00000649542.1:ENST00000647757.1:ENST00000367264.7:ENST00000648473.1:ENST00000650569.1:ENST00000648056.1:ENST00000649770.1:ENST00000648469.1:ENST00000650417.1:ENST00000235790.9:ENST00000648738.1:ENST00000648958.1:ENST00000602511.1:ENST00000650368.1:ENST00000649200.1:ENST00000648354.1:ENST00000650493.1:ENST00000470573.5:ENST00000467487.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	70	2	2.0847	3.69764	5.31058	0.00719316	0.00160599	0.0756118	0.0364977
chr17	30734355	30734453	6589829	0	+	0.571429	(0.57,1]	chr17	640847	4	EXON_LNCRNA	EXON_LNCRNA:SS3_PROX:INTRON	SUZ12P1	ENSG00000264538.7	ENST00000578070.5:ENST00000579526.5:ENST00000690405.1:ENST00000497969.6:ENST00000578195.6:ENST00000582557.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	4	43	2	1.87901	3.697615	5.51622	0.0152867	1.33983e-5	0.108569	0.00288846
chr1	213130488	213130588	311499	0	+	0.34	(0.32,0.35]	chr1	35945	2	INTRON	INTRON	RPS6KC1	ENSG00000136643.12	ENST00000615329.4:ENST00000543354.5:ENST00000614059.4:ENST00000543470.5:ENST00000366960.8:ENST00000366959.4:ENST00000490299.5:ENST00000468069.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	54	2	2.6297	3.697355	4.76501	0.0114287	0.00476699	0.0886611	0.0636201
chr8	105359336	105359436	3837649	0	+	0.35	(0.32,0.35]	chr8	354037	3	INTRON	INTRON	ZFPM2	ENSG00000169946.14	ENST00000518180.1:ENST00000407775.7:ENST00000520492.5:ENST00000520027.5:ENST00000524235.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	54	2	2.6297	3.697355	4.76501	0.0114287	0.00476699	0.0886611	0.0636201
chr17	64501143	64501201	6815818	0	-	0.310345	(0.28,0.32]	chr17	673798	1	EXON_MRNA	EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DDX5	ENSG00000108654.16	ENST00000225792.10:ENST00000678890.1:ENST00000676601.1:ENST00000676575.1:ENST00000676969.1:ENST00000678810.1:ENST00000585317.2:ENST00000678110.1:ENST00000580026.6:ENST00000678757.1:ENST00000676581.1:ENST00000676785.1:ENST00000585111.2:ENST00000577922.6:ENST00000450599.7:ENST00000678814.1:ENST00000677726.1:ENST00000583212.2:ENST00000579461.2:ENST00000540698.6:ENST00000581230.5:ENST00000581693.5:ENST00000582326.2:ENST00000578491.2:ENST00000578804.5:ENST00000578758.5:ENST00000581237.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	377	2	3.63084	3.69735	3.76386	3.96389e-6	8.76086e-7	0.00143365	5.31126e-4
chr12	42361703	42361802	5118585	0	+	0.272727	[0,0.28]	chr12	482951	1	INTRON	INTRON	PPHLN1	ENSG00000134283.18	ENST00000549190.5:ENST00000337898.10:ENST00000395580.7:ENST00000610488.4:ENST00000619544.4:ENST00000613154.4:ENST00000551723.5:ENST00000552429.5:ENST00000395568.6:ENST00000256678.12:ENST00000358314.12:ENST00000449194.6:ENST00000552761.5:ENST00000551406.5:ENST00000317560.13:ENST00000432191.6:ENST00000552202.5:ENST00000546750.5:ENST00000547847.1:ENST00000552794.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	44	2	2.57033	3.69733	4.82433	0.0305273	0.0200334	0.143385	0.109608
chr5	134168419	134168516	2726269	0	-	0.268041	[0,0.28]	chr5	256494	8	INTRON	INTRON	SKP1	ENSG00000113558.19	ENST00000353411.11:ENST00000522552.5:ENST00000521216.5:ENST00000517625.5:ENST00000523966.5:ENST00000522855.5:ENST00000328392.10:ENST00000519054.5:ENST00000519321.5:ENST00000520417.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	44	2	2.57033	3.69733	4.82433	0.0305273	0.0200334	0.143385	0.109608
chr9	4995806	4995905	4095928	0	+	0.242424	[0,0.28]	chr9	373235	94	INTRON	INTRON	JAK2	ENSG00000096968.14	ENST00000636127.1:ENST00000476574.5:ENST00000381652.4	protein_coding	protein_coding	protein_coding	protein_coding	1	44	2	2.57033	3.69733	4.82433	0.0305273	0.0200334	0.143385	0.109608
chr3	67494397	67494497	1732343	0	-	0.47	(0.44,0.476]	chr3	176554	850	INTRON	INTRON	SUCLG2	ENSG00000172340.15	ENST00000493112.5:ENST00000307227.10:ENST00000460567.5:ENST00000492795.1	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	2.5364	3.697285	4.85817	0.0309324	0.00223254	0.13151	0.0435144
chr14	28886340	28886440	5669494	0	+	0.47	(0.44,0.476]	chr14	540351	48	INTRON	INTRON	LINC02327	ENSG00000258038.6	ENST00000671154.1:ENST00000656401.1:ENST00000657120.1:ENST00000551588.6:ENST00000658814.1:ENST00000657083.1:ENST00000660501.1:ENST00000655423.1:ENST00000670211.1:ENST00000664085.1:ENST00000667065.1:ENST00000657147.1:ENST00000665952.1:ENST00000660700.1	lncRNA	lncRNA	lncRNA	lncRNA	1	39	2	2.20949	3.6971499999999997	5.18481	0.0672585	6.21872e-4	0.183051	0.0223951
chr3	46954919	46955018	1679812	0	-	0.464646	(0.44,0.476]	chr3	171431	135	INTRON	INTRON	CCDC12	ENSG00000160799.12	ENST00000425441.5:ENST00000683445.1:ENST00000292314.6:ENST00000605358.5:ENST00000488069.5:ENST00000603885.5:ENST00000446836.5:ENST00000494655.5:ENST00000604164.5:ENST00000604181.1:ENST00000605875.1:ENST00000460035.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	39	2	2.20949	3.6971499999999997	5.18481	0.0672585	6.21872e-4	0.183051	0.0223951
chr10	68053632	68053731	4637729	0	-	0.373737	(0.35,0.378]	chr10	426436	87	INTRON	INTRON	HERC4	ENSG00000148634.16	ENST00000373700.9:ENST00000412272.6:ENST00000395198.7:ENST00000473533.6:ENST00000427635.6:ENST00000513996.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	41	2	2.72497	3.69713	4.66929	0.0198266	0.00541617	0.109608	0.066545000000000007
chr10	72697940	72698039	4450143	0	+	0.373737	(0.35,0.378]	chr10	410727	45	INTRON	INTRON	MCU	ENSG00000156026.15	ENST00000373053.8:ENST00000357157.10:ENST00000604679.5:ENST00000604372.5:ENST00000603649.5:ENST00000605597.5:ENST00000536019.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	41	2	2.72497	3.69713	4.66929	0.0198266	0.00541617	0.109608	0.066545000000000007
chr10	133408442	133408541	4540363	0	+	0.434343	(0.408,0.44]	chr10	419095	53	INTRON	INTRON	MTG1	ENSG00000148824.19	ENST00000477902.6:ENST00000317502.11:ENST00000432508.3:ENST00000460848.5:ENST00000473735.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	52	2	1.94273	3.69713	5.45153	0.0456237	1.89064e-4	0.149888	0.0119565
chr5	36894587	36894687	2338608	0	+	0.42	(0.408,0.44]	chr5	225949	82	INTRON	INTRON	NIPBL	ENSG00000164190.19	ENST00000282516.13:ENST00000448238.2:ENST00000652901.1	protein_coding	protein_coding	protein_coding	protein_coding	2	52	2	1.94273	3.69713	5.45153	0.0456237	1.89064e-4	0.149888	0.0119565
chr6	149760016	149760116	2996137	0	+	0.36	(0.35,0.378]	chr6	280342	94	INTRON	INTRON	PCMT1	ENSG00000120265.19	ENST00000367384.7:ENST00000367378.6:ENST00000484601.6:ENST00000367380.9:ENST00000544496.5:ENST00000649295.1:ENST00000494411.6:ENST00000460828.6:ENST00000464889.7:ENST00000486585.2:ENST00000495487.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	41	2	2.72497	3.69713	4.66929	0.0198266	0.00541617	0.109608	0.066545000000000007
chr7	1491539	1491636	3462541	0	-	0.412371	(0.408,0.44]	chr7	323860	15	INTRON	INTRON	INTS1	ENSG00000164880.16	ENST00000404767.8:ENST00000468115.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	52	2	1.94273	3.69713	5.45153	0.0456237	1.89064e-4	0.149888	0.0119565
chr7	136120985	136121085	3431463	0	+	0.31	(0.28,0.32]	chr7	319911	34	INTRON	INTRON	ENSG00000232053	ENSG00000232053.7	ENST00000657456.1:ENST00000668062.1:ENST00000668668.1:ENST00000445293.6:ENST00000659747.1:ENST00000668896.1:ENST00000435996.1	lncRNA	lncRNA	lncRNA	lncRNA	2	55	2	2.24061	3.697095	5.15358	0.0194267	0.0052282	0.119831	0.0633615
chr16	23895052	23895152	6324351	0	+	0.26	[0,0.28]	chr16	605701	13	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000498739.1	protein_coding	protein_coding	protein_coding	protein_coding	3	72	2	1.91898	3.6970599999999996	5.47514	0.0266433	0.00354561	0.134413	0.0529186
chr1	182856778	182856878	273160	0	+	0.36	(0.35,0.378]	chr1	31900	2	SS5_PROX	SS5_PROX:INTRON	DHX9	ENSG00000135829.17	ENST00000367549.4	protein_coding	protein_coding	protein_coding	protein_coding	2	86	2	3.66151	3.69688	3.73225	5.46487e-4	4.717e-4	0.0215463	0.0196294
chr13	39037430	39037524	5576206	0	-	0.43617	(0.408,0.44]	chr13	533097	3	UTR5	UTR5:EXON_MRNA	PROSER1	ENSG00000120685.20	ENST00000352251.8:ENST00000625998.2:ENST00000418503.1	protein_coding	protein_coding	protein_coding	protein_coding	2	52	2	2.26792	3.6968	5.12568	0.0179973	7.90919e-4	0.106756	0.0258324
chr17	82618449	82618542	6853381	0	-	0.451613	(0.44,0.476]	chr17	679335	7	INTRON	INTRON	WDR45B	ENSG00000141580.16	ENST00000392325.9:ENST00000572583.5:ENST00000576517.1:ENST00000573656.5:ENST00000571835.5:ENST00000573616.5:ENST00000571767.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	80	2	1.77578	3.69664	5.6175	0.0105236	2.84938e-4	0.0908969	0.015495
chr5	79612432	79612523	2398722	0	+	0.527473	(0.515,0.57]	chr5	231668	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TENT2	ENSG00000164329.14	ENST00000505571.5:ENST00000423041.6:ENST00000504233.5:ENST00000453514.6:ENST00000428308.6:ENST00000515807.5:ENST00000502269.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	11	305	2	3.23842	3.6966	4.15478	2.76967e-6	1.73036e-9	0.00118091	1.13295e-5
chr1	88813644	88813733	157077	0	+	0.438202	(0.408,0.44]	chr1	17113	2	CDS	CDS:EXON_MRNA	PKN2	ENSG00000065243.20	ENST00000370521.8:ENST00000370513.9	protein_coding	protein_coding	protein_coding	protein_coding	2	48	2	2.49983	3.6965500000000002	4.89327	0.00713527	0.00458906	0.0756118	0.0595107
chr17	38849834	38849933	6765096	0	-	0.464646	(0.44,0.476]	chr17	665390	19	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	RPL23	ENSG00000125691.14	ENST00000479035.7:ENST00000394333.5:ENST00000394332.5	protein_coding	protein_coding	protein_coding	protein_coding	1	39	2	2.86231	3.696325	4.53034	0.012214	0.00672609	0.0910127	0.0738715
chr3	196868872	196868972	1596447	0	+	0.45	(0.44,0.476]	chr3	165386	4	INTRON	INTRON	SENP5	ENSG00000119231.11	ENST00000445299.6:ENST00000323460.10:ENST00000419026.5	protein_coding	protein_coding	protein_coding	protein_coding	1	39	2	2.86231	3.696325	4.53034	0.012214	0.00672609	0.0910127	0.0738715
chr7	119620777	119620877	3627544	0	-	0.35	(0.32,0.35]	chr7	337315	1203	INTRON	INTRON	LINC02476	ENSG00000225546.6	ENST00000660268.1	lncRNA	lncRNA	lncRNA	lncRNA	1	47	2	3.12146	3.696295	4.27113	0.0199982	0.00630799	0.120668	0.0687526
chr1	179971501	179971601	267604	0	+	0.49	(0.476,0.515]	chr1	31299	21	INTRON	INTRON	CEP350	ENSG00000135837.16	ENST00000491495.2:ENST00000367607.8	protein_coding	protein_coding	protein_coding	protein_coding	2	48	2	2.13304	3.6962450000000002	5.25945	0.024866	0.00111445	0.132101	0.0306328
chr2	39004333	39004432	1101142	0	-	0.444444	(0.44,0.476]	chr2	118214	54	INTRON	INTRON	SOS1	ENSG00000115904.15	ENST00000692089.1:ENST00000402219.8:ENST00000685279.1:ENST00000690876.1:ENST00000692227.1:ENST00000395038.6:ENST00000691229.1:ENST00000692620.1:ENST00000689668.1:ENST00000474390.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	36	2	2.9586	3.696185	4.43377	0.0162803	0.00758318	0.101453	0.0773151
chr3	48975868	48975965	1422050	0	+	0.453608	(0.44,0.476]	chr3	149556	5	INTRON	INTRON	ARIH2	ENSG00000177479.20	ENST00000449376.5:ENST00000490095.5:ENST00000356401.9:ENST00000452385.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	36	2	2.9586	3.696185	4.43377	0.0162803	0.00758318	0.101453	0.0773151
chr3	194628809	194628909	1891750	0	-	0.43	(0.408,0.44]	chr3	189342	3	SS3_PROX	SS3_PROX:INTRON	TMEM44	ENSG00000145014.18	ENST00000392432.6:ENST00000347147.9:ENST00000381975.7:ENST00000473092.5:ENST00000419280.5:ENST00000494894.5:ENST00000330115.3:ENST00000430601.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	48	2	2.14732	3.6961649999999997	5.24501	0.0237354	0.00137378	0.129075	0.0336718
chr1	92731703	92731803	507634	0	-	0.35	(0.32,0.35]	chr1	59878	266	INTRON	INTRON	EVI5	ENSG00000067208.16	ENST00000370331.5:ENST00000540033.2:ENST00000684568.2:ENST00000474806.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	40	2	3.0247	3.696125	4.36755	0.0300552	0.00671684	0.129138	0.0738715
chr15	41364108	41364207	6005094	0	+	0.333333	(0.32,0.35]	chr15	571331	55	INTRON	INTRON	NUSAP1	ENSG00000137804.14	ENST00000668273.1:ENST00000260359.10:ENST00000558123.5:ENST00000414849.6:ENST00000450592.6:ENST00000559596.6:ENST00000560747.5:ENST00000560177.5:ENST00000557840.5:ENST00000560898.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	40	2	3.0247	3.696125	4.36755	0.0300552	0.00671684	0.129138	0.0738715
chr17	39344739	39344839	6766083	0	-	0.35	(0.32,0.35]	chr17	665497	11	INTRON	INTRON	FBXL20	ENSG00000108306.13	ENST00000264658.11:ENST00000583610.5:ENST00000394294.7:ENST00000577399.5:ENST00000647139.1	protein_coding	protein_coding	protein_coding	protein_coding	1	40	2	3.0247	3.696125	4.36755	0.0300552	0.00671684	0.129138	0.0738715
chr1	100926139	100926239	174644	0	+	0.24	[0,0.28]	chr1	18964	39	INTRON	INTRON	SLC30A7	ENSG00000162695.12	ENST00000370112.8:ENST00000357650.9	protein_coding	protein_coding	protein_coding	protein_coding	1	44	2	2.63238	3.6960100000000002	4.75964	0.0259691	0.0232081	0.133676	0.118148
chr2	222880839	222880939	1021409	0	+	0.27	[0,0.28]	chr2	109251	4	SS3_PROX	SS3_PROX:INTRON	ACSL3	ENSG00000123983.15	ENST00000392066.7:ENST00000407441.5:ENST00000680251.1:ENST00000679541.1:ENST00000681906.1:ENST00000679545.1:ENST00000679932.1:ENST00000680100.1:ENST00000680475.1:ENST00000680525.1:ENST00000680420.1:ENST00000681326.1:ENST00000681292.1:ENST00000681017.1:ENST00000680382.1:ENST00000535678.2:ENST00000680395.1:ENST00000680736.1:ENST00000679546.1:ENST00000680147.1:ENST00000357430.8:ENST00000681009.1:ENST00000679514.1:ENST00000681697.1:ENST00000680921.1:ENST00000681383.1:ENST00000413316.1:ENST00000679558.1:ENST00000680684.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	44	2	2.63238	3.6960100000000002	4.75964	0.0259691	0.0232081	0.133676	0.118148
chr16	3715527	3715627	6434458	0	-	0.44	(0.408,0.44]	chr16	619383	47	INTRON	INTRON	TRAP1	ENSG00000126602.11	ENST00000246957.10:ENST00000538171.5:ENST00000571804.5:ENST00000574941.5:ENST00000576106.5:ENST00000571011.1:ENST00000570403.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	129	2	3.07082	3.695875	4.32093	2.09358e-4	1.15245e-5	0.0131276	0.00250519
chr19	2218318	2218418	6996747	0	+	0.27	[0,0.28]	chr19	693549	4	SS5_PROX	SS5_PROX:INTRON	DOT1L	ENSG00000104885.19	ENST00000398665.8:ENST00000686010.1:ENST00000482433.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	44	2	2.5055	3.695875	4.88625	0.0359431	0.0173315	0.152322	0.104099
chr21	31729966	31730066	7437810	0	-	0.25	[0,0.28]	chr21	758689	233	INTRON	INTRON	SCAF4	ENSG00000156304.15	ENST00000286835.12:ENST00000399804.5:ENST00000434667.3:ENST00000485790.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	44	2	2.5055	3.695875	4.88625	0.0359431	0.0173315	0.152322	0.104099
chr3	44509052	44509152	1676880	0	-	0.25	[0,0.28]	chr3	171167	56	INTRON	INTRON	ZNF852	ENSG00000178917.17	ENST00000436261.6:ENST00000489411.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	44	2	2.5055	3.695875	4.88625	0.0359431	0.0173315	0.152322	0.104099
chr3	121519670	121519770	1798187	0	-	0.23	[0,0.28]	chr3	180535	4	SS5_PROX	SS5_PROX:INTRON	POLQ	ENSG00000051341.15	ENST00000264233.6	protein_coding	protein_coding	protein_coding	protein_coding	1	44	2	2.5055	3.695875	4.88625	0.0359431	0.0173315	0.152322	0.104099
chr7	119846239	119846339	3629803	0	-	0.29	(0.28,0.32]	chr7	337335	450	INTRON	INTRON	LINC02476	ENSG00000225546.6	ENST00000660268.1:ENST00000431071.5:ENST00000426413.2	lncRNA	lncRNA	lncRNA	lncRNA	4	76	2	1.83325	3.69585	5.55845	0.0199548	0.00141854	0.120668	0.0340865
chr6	125007176	125007275	2951923	0	+	0.30303	(0.28,0.32]	chr6	277690	6	INTRON	INTRON	RNF217	ENSG00000146373.17	ENST00000521654.7:ENST00000560949.5:ENST00000519565.5:ENST00000454842.2:ENST00000368414.6:ENST00000519799.5:ENST00000359704.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	76	2	1.68411	3.6957500000000003	5.70739	0.0323543	8.32651e-4	0.145026	0.0266389
chr1	114731603	114731703	528354	0	-	0.34	(0.32,0.35]	chr1	62287	3	EXON_MRNA	EXON_MRNA:INTRON	CSDE1	ENSG00000009307.17	ENST00000339438.10:ENST00000610726.5:ENST00000692719.1:ENST00000358528.9:ENST00000688211.1:ENST00000438362.7:ENST00000689217.1:ENST00000689989.1:ENST00000686025.1:ENST00000686781.1:ENST00000686123.1:ENST00000684913.1:ENST00000686235.1:ENST00000693467.1:ENST00000689732.1:ENST00000693644.1:ENST00000687759.1:ENST00000692044.1:ENST00000689885.1:ENST00000691403.1:ENST00000692629.1:ENST00000690013.1:ENST00000690420.1:ENST00000692950.1:ENST00000686667.1:ENST00000691032.1:ENST00000685676.1:ENST00000529046.6:ENST00000692672.1:ENST00000691377.1:ENST00000688611.1:ENST00000690207.1:ENST00000693311.1:ENST00000689510.1:ENST00000686581.1:ENST00000689727.1:ENST00000690784.1:ENST00000483030.2:ENST00000687548.1:ENST00000261443.9:ENST00000530886.5:ENST00000369530.5:ENST00000534699.5:ENST00000524652.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	63	2	2.10695	3.6957250000000004	5.2845	0.0127483	0.00240071	0.0987441	0.0440612
chr2	134931954	134932053	872369	0	+	0.343434	(0.32,0.35]	chr2	97663	117	INTRON	INTRON	CCNT2	ENSG00000082258.13	ENST00000419781.5:ENST00000446247.5:ENST00000264157.10:ENST00000452839.5:ENST00000295238.10:ENST00000475094.1:ENST00000417175.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	63	2	2.10695	3.6957250000000004	5.2845	0.0127483	0.00240071	0.0987441	0.0440612
chr2	62951446	62951545	794774	0	+	0.313131	(0.28,0.32]	chr2	88824	19	INTRON	INTRON	EHBP1	ENSG00000115504.15	ENST00000405015.7:ENST00000431489.6:ENST00000263991.9:ENST00000405289.5:ENST00000469591.1:ENST00000444311.1:ENST00000454124.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	61	2	2.14002	3.695715	5.25141	0.0304107	0.00125199	0.130461	0.0328543
chr7	133535022	133535122	3420996	0	+	0.38	(0.378,0.408]	chr7	319376	510	INTRON	INTRON	EXOC4	ENSG00000131558.15	ENST00000486013.5:ENST00000253861.5:ENST00000486409.6:ENST00000479839.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	59	2	1.8374	3.69564	5.55388	0.0299228	5.01023e-4	0.142135	0.0206993
chr6	143186269	143186369	2976442	0	+	0.34	(0.32,0.35]	chr6	279150	2	SS3_PROX	SS3_PROX:INTRON	AIG1	ENSG00000146416.19	ENST00000367601.8:ENST00000447498.5:ENST00000646199.1:ENST00000357847.9:ENST00000629020.2:ENST00000275235.8:ENST00000494282.6:ENST00000458219.1:ENST00000470265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	96	2	3.3721	3.6955799999999996	4.01906	0.00182912	1.78578e-4	0.0396683	0.0121697
chr8	31043972	31044072	3728033	0	+	0.33	(0.32,0.35]	chr8	346522	96	INTRON	INTRON	WRN	ENSG00000165392.11	ENST00000650667.1:ENST00000298139.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	65	2	2.37199	3.6955799999999996	5.01917	0.0055659	0.00465833	0.0648867	0.0629753
chr16	1689557	1689656	6275322	0	+	0.464646	(0.44,0.476]	chr16	599518	36	INTRON	INTRON	JPT2	ENSG00000206053.13	ENST00000569256.5:ENST00000567717.1:ENST00000562684.5:ENST00000248098.8:ENST00000561516.5:ENST00000382711.9:ENST00000566742.5:ENST00000569765.5:ENST00000566925.5:ENST00000382710.8:ENST00000566691.5:ENST00000565851.5:ENST00000568376.1:ENST00000562569.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	36	2	2.49112	3.6955600000000004	4.9	0.0315968	0.00423315	0.144381	0.0572185
chr7	150284052	150284152	3673255	0	-	0.46	(0.44,0.476]	chr7	340876	346	INTRON	INTRON	ACTR3C	ENSG00000106526.11	ENST00000478393.5:ENST00000683684.1:ENST00000252071.8	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	2.49112	3.6955600000000004	4.9	0.0315968	0.00423315	0.144381	0.0572185
chr3	10036086	10036186	1362279	0	+	0.47	(0.44,0.476]	chr3	143447	4	SS3_PROX	SS3_PROX:INTRON	FANCD2	ENSG00000144554.13	ENST00000682647.1:ENST00000287647.7:ENST00000676013.1:ENST00000675286.1:ENST00000419585.5:ENST00000431693.1:ENST00000438741.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	38	2	2.46135	3.6955150000000003	4.92968	0.0374637	0.00171443	0.140008	0.0381936
chr5	32598172	32598270	2334882	0	+	0.489796	(0.476,0.515]	chr5	225370	34	EXON_MRNA	EXON_MRNA:INTRON	SUB1	ENSG00000113387.12	ENST00000506237.5:ENST00000512913.5:ENST00000513013.5:ENST00000265073.9:ENST00000511615.5:ENST00000515355.5:ENST00000502897.5:ENST00000504789.5:ENST00000504016.1:ENST00000511175.1:ENST00000502453.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	104	2	3.35807	3.6953199999999997	4.03257	1.37324e-4	9.96835e-5	0.0100829	0.00903184
chr10	56357424	56357523	4621668	0	-	0.282828	(0.28,0.32]	chr10	425544	3	UTR3	UTR3:EXON_MRNA	ZWINT	ENSG00000122952.17	ENST00000373944.8:ENST00000395405.5:ENST00000494312.5:ENST00000318387.6:ENST00000489649.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	55	2	2.13651	3.695195	5.25388	0.0265696	0.00385849	0.134088	0.0542786
chr3	39095707	39095803	1401599	0	+	0.3125	(0.28,0.32]	chr3	147133	11	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	WDR48	ENSG00000114742.14	ENST00000302313.10:ENST00000420940.6:ENST00000466405.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	55	2	2.13651	3.695195	5.25388	0.0265696	0.00385849	0.134088	0.0542786
chr21	46242931	46243031	7470970	0	-	0.34	(0.32,0.35]	chr21	761581	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MCM3AP	ENSG00000160294.11	ENST00000397708.1:ENST00000291688.6:ENST00000486937.5:ENST00000496607.5:ENST00000467026.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	40	2	2.31405	3.69517	5.07629	0.0517107	0.00468114	0.176696	0.0600108
chr1	235168332	235168428	662235	0	-	0.291667	(0.28,0.32]	chr1	78414	16	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	ARID4B	ENSG00000054267.22	ENST00000474953.5:ENST00000349213.7:ENST00000366603.6:ENST00000264183.9:ENST00000421364.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	41	2	2.80157	3.69516	4.58875	0.0230574	0.0147132	0.118056	0.106558
chr13	19716080	19716180	5552271	0	-	0.29	(0.28,0.32]	chr13	530696	61	INTRON	INTRON	PSPC1	ENSG00000121390.19	ENST00000471658.5:ENST00000492741.5:ENST00000635562.1:ENST00000338910.9:ENST00000619300.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	41	2	2.80157	3.69516	4.58875	0.0230574	0.0147132	0.118056	0.106558
chr20	21332640	21332740	7248440	0	+	0.31	(0.28,0.32]	chr20	735920	2	SS5_PROX	SS5_PROX:INTRON	XRN2	ENSG00000088930.8	ENST00000377191.5	protein_coding	protein_coding	protein_coding	protein_coding	1	41	2	2.80157	3.69516	4.58875	0.0230574	0.0147132	0.118056	0.106558
chr7	92247518	92247618	3352807	0	+	0.32	(0.28,0.32]	chr7	312479	6	INTRON	INTRON	ANKIB1	ENSG00000001629.10	ENST00000265742.8	protein_coding	protein_coding	protein_coding	protein_coding	1	41	2	2.80157	3.69516	4.58875	0.0230574	0.0147132	0.118056	0.106558
chr9	107298744	107298844	4183532	0	+	0.32	(0.28,0.32]	chr9	381543	135	INTRON	INTRON	RAD23B	ENSG00000119318.13	ENST00000419616.5:ENST00000358015.8:ENST00000416373.6:ENST00000442587.1	protein_coding	protein_coding	protein_coding	protein_coding	1	41	2	2.80157	3.69516	4.58875	0.0230574	0.0147132	0.118056	0.106558
chrX	118500568	118500668	7708219	0	+	0.29	(0.28,0.32]	chrX	788656	41	INTRON	INTRON	DOCK11	ENSG00000147251.16	ENST00000276202.9:ENST00000276204.10	protein_coding	protein_coding	protein_coding	protein_coding	1	41	2	2.80157	3.69516	4.58875	0.0230574	0.0147132	0.118056	0.106558
chr3	185665772	185665872	1884743	0	-	0.52	(0.515,0.57]	chr3	188520	70	INTRON	INTRON	IGF2BP2	ENSG00000073792.16	ENST00000382199.7:ENST00000346192.7:ENST00000457616.6:ENST00000421047.3:ENST00000494906.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	92	2	3.12673	3.695145	4.26356	3.95089e-4	1.84244e-5	0.0178567	0.00349761
chr15	41292811	41292911	6004476	0	+	0.36	(0.35,0.378]	chr15	571266	20	INTRON	INTRON	OIP5-AS1	ENSG00000247556.6	ENST00000558945.5:ENST00000500949.6:ENST00000561275.5:ENST00000560706.5:ENST00000501665.2	lncRNA	lncRNA	lncRNA	lncRNA	2	50	2	2.2877	3.69498	5.10226	0.0155765	0.00327038	0.109411	0.0508595
chr11	61817494	61817594	4797349	0	+	0.35	(0.32,0.35]	chr11	444376	4	INTRON	INTRON	FADS2	ENSG00000134824.14	ENST00000574708.5:ENST00000257261.10:ENST00000522639.1:ENST00000522056.5:ENST00000517839.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	72	2	1.88141	3.69497	5.50853	0.0161424	0.0010959399999999999	0.109464	0.0304174
chr19	10176891	10176991	7134687	0	-	0.31	(0.28,0.32]	chr19	719221	2	SS5_PROX	SS5_PROX:INTRON	DNMT1	ENSG00000130816.17	ENST00000340748.8:ENST00000359526.9:ENST00000592705.5:ENST00000679103.1:ENST00000677634.1:ENST00000676820.1:ENST00000677250.1:ENST00000677013.1:ENST00000677685.1:ENST00000677616.1:ENST00000676604.1:ENST00000678024.1:ENST00000676610.1:ENST00000678804.1:ENST00000679313.1:ENST00000677946.1:ENST00000586988.5:ENST00000588952.5:ENST00000588118.5:ENST00000592342.5:ENST00000592054.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	41	2	2.46018	3.6947349999999997	4.92929	0.0375904	0.0098607	0.156054	0.0838128
chr4	39846575	39846674	2130853	0	-	0.313131	(0.28,0.32]	chr4	210084	8	EXON_MRNA	EXON_MRNA:INTRON	PDS5A	ENSG00000121892.15	ENST00000303538.13:ENST00000507766.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	41	2	2.46018	3.6947349999999997	4.92929	0.0375904	0.0098607	0.156054	0.0838128
chr7	105501919	105502019	3604655	0	-	0.39	(0.378,0.408]	chr7	336253	1	SS5_PROX	SS5_PROX:INTRON	PUS7	ENSG00000091127.14	ENST00000481939.5:ENST00000469408.6:ENST00000356362.6:ENST00000482157.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	85	2	3.4275	3.69442	3.96134	0.00126053	1.71065e-4	0.03295	0.0119955
chr17	82447927	82448022	6853252	0	-	0.4	(0.378,0.408]	chr17	679293	1	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	CYBC1	ENSG00000178927.18	ENST00000306645.10:ENST00000342572.12:ENST00000434650.6:ENST00000584024.5:ENST00000437807.6:ENST00000585044.5:ENST00000578895.5:ENST00000583617.5:ENST00000582725.5:ENST00000577436.5:ENST00000585064.5:ENST00000577732.5:ENST00000578919.5:ENST00000580560.5:ENST00000581196.5:ENST00000584503.5:ENST00000585080.5:ENST00000577888.5:ENST00000577707.5:ENST00000578913.5:ENST00000584891.5:ENST00000584408.5:ENST00000577696.5:ENST00000577471.5:ENST00000577834.5:ENST00000578941.5:ENST00000578064.1:ENST00000582395.5:ENST00000582608.5:ENST00000583359.1:ENST00000582545.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	203	2	3.29534	3.694375	4.09341	2.33644e-5	1.49404e-6	0.00395446	7.32023e-4
chr12	122605515	122605615	5241432	0	+	0.48	(0.476,0.515]	chr12	497847	1	SS5_PROX	SS5_PROX:INTRON	KNTC1	ENSG00000184445.12	ENST00000450485.6:ENST00000333479.12:ENST00000436959.7:ENST00000546125.1	protein_coding	protein_coding	protein_coding	protein_coding	2	51	2	2.26789	3.694305	5.12072	0.0176567	8.42139e-4	0.105233	0.0263691
chr3	6513265	6513364	1356373	0	+	0.222222	[0,0.28]	chr3	142508	1	INTRON	INTRON	ENSG00000189229	ENSG00000189229.12	ENST00000660158.1:ENST00000433639.1:ENST00000655754.1:ENST00000653839.1:ENST00000662846.1:ENST00000659876.1:ENST00000414438.2:ENST00000658468.1:ENST00000414603.1:ENST00000669512.1:ENST00000667028.1:ENST00000655541.1:ENST00000668643.1:ENST00000671568.1:ENST00000671036.1:ENST00000669798.1:ENST00000655753.1:ENST00000655856.1:ENST00000658398.1:ENST00000661518.1:ENST00000661279.1:ENST00000655495.1:ENST00000663041.1:ENST00000659827.1:ENST00000667716.1:ENST00000662508.1:ENST00000668416.1:ENST00000658133.1:ENST00000659651.1:ENST00000342990.4:ENST00000660054.1:ENST00000671370.1	lncRNA	lncRNA	lncRNA	lncRNA	2	68	2	2.24053	3.6941500000000005	5.14777	0.0256186	0.00311898	0.120376	0.0512673
chr1	225863594	225863676	646029	0	-	0.5	(0.476,0.515]	chr1	76490	1	SS5_PROX	SS5_PROX:INTRON	TMEM63A	ENSG00000196187.12	ENST00000366835.8:ENST00000474478.5:ENST00000537914.5:ENST00000483779.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	36	2	2.94692	3.6940999999999997	4.44128	0.0151924	0.00794331	0.0994339	0.0797304
chr3	125462558	125462658	1807279	0	-	0.32	(0.28,0.32]	chr3	181513	13	INTRON	INTRON	SNX4	ENSG00000114520.11	ENST00000251775.9:ENST00000471751.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	45	2	2.18975	3.694085	5.19842	0.0776042	0.00152333	0.196285	0.0360297
chr7	133050783	133050883	3645576	0	-	0.5	(0.476,0.515]	chr7	338876	144	INTRON	INTRON	CHCHD3	ENSG00000106554.13	ENST00000262570.10:ENST00000448878.6:ENST00000496427.5:ENST00000423635.5:ENST00000481152.2:ENST00000457942.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	104	2	3.49381	3.69407	3.89433	1.98377e-4	6.39656e-5	0.0129156	0.00661396
chr5	136500419	136500519	2493746	0	+	0.37	(0.35,0.378]	chr5	238200	332	INTRON	INTRON	ENSG00000249803	ENSG00000249803.6	ENST00000653158.1:ENST00000446720.3:ENST00000665110.1:ENST00000511165.6:ENST00000666378.1:ENST00000657590.1:ENST00000658501.1:ENST00000660537.1:ENST00000659712.1	lncRNA	lncRNA	lncRNA	lncRNA	2	85	2	3.54684	3.69402	3.8412	0.00119142	1.97447e-4	0.0315806	0.0122531
chr1	70167196	70167296	479505	0	-	0.36	(0.35,0.378]	chr1	57643	74	INTRON	INTRON	LRRC40	ENSG00000066557.6	ENST00000370952.4	protein_coding	protein_coding	protein_coding	protein_coding	2	50	2	2.34278	3.69395	5.04512	0.0129593	0.00393262	0.0991015	0.0548259
chr12	50507938	50508038	5137179	0	+	0.37	(0.35,0.378]	chr12	484468	23	INTRON	INTRON	DIP2B	ENSG00000066084.13	ENST00000301180.10:ENST00000549620.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	50	2	2.34278	3.69395	5.04512	0.0129593	0.00393262	0.0991015	0.0548259
chr4	39850451	39850550	2130894	0	-	0.353535	(0.35,0.378]	chr4	210094	4	INTRON	INTRON	PDS5A	ENSG00000121892.15	ENST00000303538.13	protein_coding	protein_coding	protein_coding	protein_coding	2	50	2	2.34278	3.69395	5.04512	0.0129593	0.00393262	0.0991015	0.0548259
chr15	92933749	92933848	6104032	0	+	0.494949	(0.476,0.515]	chr15	581428	43	INTRON	INTRON	ENSG00000279765:CHD2	ENSG00000279765.3:ENSG00000173575.22	ENST00000630790.1:ENST00000626874.2:ENST00000394196.9:ENST00000635856.1:ENST00000420239.7:ENST00000628375.2:ENST00000625990.3:ENST00000626782.2:ENST00000629136.1:ENST00000637572.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	58	2	2.29359	3.69391	5.09423	0.00584957	0.00204588	0.0689807	0.04086
chr10	17451959	17452059	4568992	0	-	0.36	(0.35,0.378]	chr10	421387	610	INTRON	INTRON	ST8SIA6	ENSG00000148488.17	ENST00000377602.5:ENST00000648997.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	50	2	2.23043	3.69383	5.15723	0.0187487	0.00272706	0.117523	0.0467523
chr21	39255045	39255144	7464940	0	-	0.40404	(0.378,0.408]	chr21	760483	38	INTRON	INTRON	BRWD1	ENSG00000185658.14	ENST00000333229.6:ENST00000342449.8:ENST00000446924.5:ENST00000380800.7:ENST00000430093.5:ENST00000445245.5:ENST00000445668.5:ENST00000412604.1:ENST00000455867.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	67	2	2.0102	3.693795	5.37739	0.00940766	0.0010014	0.0861183	0.0288906
chrX	101038451	101038551	7855144	0	-	0.43	(0.408,0.44]	chrX	800816	4	SS3_PROX	SS3_PROX:INTRON	TRMT2B	ENSG00000188917.15	ENST00000545398.5:ENST00000372936.4:ENST00000372939.5:ENST00000372935.5:ENST00000478422.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	79	2	3.45019	3.6937550000000003	3.93732	0.00152664	1.0367e-4	0.0353936	0.00863144
chr12	121330886	121330978	5436963	0	-	0.445652	(0.44,0.476]	chr12	519892	3	UTR5	UTR5:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ANAPC5	ENSG00000089053.13	ENST00000261819.8:ENST00000535641.5:ENST00000541887.5:ENST00000534976.5:ENST00000441917.6:ENST00000539079.5:ENST00000544314.5:ENST00000535482.1:ENST00000545218.5:ENST00000535472.5:ENST00000538334.1:ENST00000538223.1:ENST00000539612.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	168	2	3.259	3.6936999999999998	4.1284	7.31914e-5	1.07082e-6	0.00767614	5.93499e-4
chr3	15792128	15792228	1623763	0	-	0.43	(0.408,0.44]	chr3	168013	101	INTRON	INTRON	ANKRD28	ENSG00000206560.12	ENST00000399451.6:ENST00000624145.3:ENST00000683139.1:ENST00000412318.5:ENST00000497037.5:ENST00000451422.1:ENST00000498524.5:ENST00000439830.5:ENST00000461696.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	36	2	2.96007	3.6936	4.42713	0.0173083	0.00753901	0.104099	0.0773151
chr10	84141368	84141461	4477053	0	+	0.311828	(0.28,0.32]	chr10	412123	7	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	GHITM	ENSG00000165678.22	ENST00000691609.1:ENST00000372134.6:ENST00000690587.1:ENST00000686583.1:ENST00000690067.1:ENST00000691751.1:ENST00000687085.1:ENST00000692871.1:ENST00000691155.1:ENST00000690920.1:ENST00000688802.1:ENST00000686247.1:ENST00000690283.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	45	2	2.62686	3.6935849999999997	4.76031	0.0289217	0.00656106	0.1274	0.0735539
chr17	39512030	39512130	6607499	0	+	0.32	(0.28,0.32]	chr17	643299	4	SS5_PROX	SS5_PROX:INTRON	CDK12	ENSG00000167258.15	ENST00000447079.6:ENST00000584632.5:ENST00000430627.6	protein_coding	protein_coding	protein_coding	protein_coding	1	45	2	2.62686	3.6935849999999997	4.76031	0.0289217	0.00656106	0.1274	0.0735539
chr12	106986470	106986567	5403987	0	-	0.505155	(0.476,0.515]	chr12	515667	15	UTR5	UTR5:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MTERF2	ENSG00000120832.10	ENST00000240050.9:ENST00000392830.6:ENST00000552029.1:ENST00000548101.1:ENST00000550496.1:ENST00000547115.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	36	2	2.47949	3.69355	4.90761	0.0326974	0.00386428	0.145164	0.0542786
chr8	141404146	141404246	3878499	0	+	0.51	(0.476,0.515]	chr8	356195	117	INTRON	INTRON	PTP4A3	ENSG00000184489.13	ENST00000520105.5:ENST00000521578.6:ENST00000523147.5	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	2.47949	3.69355	4.90761	0.0326974	0.00386428	0.145164	0.0542786
chr9	130202578	130202678	4212144	0	+	0.51	(0.476,0.515]	chr9	386126	12	INTRON	INTRON	NCS1	ENSG00000107130.10	ENST00000372398.6:ENST00000493042.1:ENST00000630865.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	36	2	2.47949	3.69355	4.90761	0.0326974	0.00386428	0.145164	0.0542786
chr2	108729699	108729794	847512	0	+	0.442105	(0.44,0.476]	chr2	94794	1	INTRON	INTRON	RANBP2	ENSG00000153201.16	ENST00000283195.11:ENST00000425282.4:ENST00000629728.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	66	2	1.65297	3.6934	5.73383	0.0331814	1.70474e-4	0.145918	0.0119761
chr1	86929193	86929293	153738	0	+	0.29	(0.28,0.32]	chr1	16952	130	INTRON	INTRON	HS2ST1	ENSG00000153936.18	ENST00000370550.10:ENST00000370551.8:ENST00000687893.1:ENST00000693745.1:ENST00000689904.1:ENST00000690674.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	76	2	1.64429	3.693315	5.7423400000000004	0.0365539	7.31742e-4	0.153932	0.0248722
chr4	70911044	70911144	1970592	0	+	0.37	(0.35,0.378]	chr4	197571	81	INTRON	INTRON	MOB1B	ENSG00000173542.9	ENST00000502869.5:ENST00000509041.5:ENST00000309395.7:ENST00000396051.2:ENST00000511449.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	85	2	3.47933	3.693285	3.90724	0.0015613	1.41179e-4	0.0360352	0.0102551
chr7	141779435	141779535	3440515	0	+	0.39	(0.378,0.408]	chr7	320701	287	INTRON	INTRON	SSBP1	ENSG00000106028.11	ENST00000465582.5	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	3.17089	3.69326	4.21563	0.0315429	0.00357279	0.13151	0.0548435
chr17	16191968	16192068	6735000	0	-	0.47	(0.44,0.476]	chr17	660744	49	INTRON	INTRON	NCOR1	ENSG00000141027.22	ENST00000268712.8:ENST00000395851.5:ENST00000395848.5:ENST00000411510.5:ENST00000582357.5:ENST00000436828.5:ENST00000460276.5:ENST00000585296.1:ENST00000579974.1:ENST00000430577.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	38	2	3.25801	3.69322	4.12843	0.0337192	0.00248185	0.134145	0.0460771
chr5	65955281	65955380	2371131	0	+	0.454545	(0.44,0.476]	chr5	228472	281	INTRON	INTRON	ERBIN	ENSG00000112851.15	ENST00000380943.6:ENST00000507490.1:ENST00000416865.6:ENST00000380935.5:ENST00000284037.10:ENST00000380938.6:ENST00000511297.5:ENST00000506030.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	38	2	3.25801	3.69322	4.12843	0.0337192	0.00248185	0.134145	0.0460771
chr16	24544569	24544668	6327705	0	+	0.313131	(0.28,0.32]	chr16	605824	34	INTRON	INTRON	RBBP6	ENSG00000122257.20	ENST00000564314.5:ENST00000567686.5:ENST00000568015.5:ENST00000319715.10:ENST00000452655.6:ENST00000381039.7:ENST00000646282.1:ENST00000348022.6	protein_coding	protein_coding	protein_coding	protein_coding	2	99	2	3.65016	3.69321	3.73626	7.58796e-4	6.39301e-4	0.025219	0.0228666
chr6	167041818	167041918	3033804	0	+	0.59	(0.57,1]	chr6	282698	18	UTR3	UTR3:EXON_MRNA:INTRON	CEP43	ENSG00000213066.13	ENST00000622353.4:ENST00000366847.9:ENST00000646989.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	86	2	2.68085	3.692995	4.70514	1.14119e-4	2.16864e-7	0.0091431	2.38737e-4
chr1	35271779	35271879	68318	0	+	0.43	(0.408,0.44]	chr1	8717	23	INTRON	INTRON	ZMYM4	ENSG00000146463.12	ENST00000314607.11:ENST00000441447.1	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	2.49258	3.692925	4.89327	0.0314608	0.00458906	0.144381	0.0595107
chr22	49822650	49822750	7603175	0	-	0.43	(0.408,0.44]	chr22	778664	3	SS5_PROX	SS5_PROX:INTRON	BRD1	ENSG00000100425.19	ENST00000404760.6:ENST00000404034.5:ENST00000216267.12:ENST00000438393.5:ENST00000457780.3:ENST00000459821.1:ENST00000494833.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	36	2	2.49258	3.692925	4.89327	0.0314608	0.00458906	0.144381	0.0595107
chr5	7889471	7889567	2316893	0	+	0.40625	(0.378,0.408]	chr5	224449	2	SS5_PROX	SS5_PROX:INTRON	MTRR	ENSG00000124275.15	ENST00000264668.6:ENST00000513439.5:ENST00000511461.5:ENST00000440940.7:ENST00000510525.5:ENST00000508101.5:ENST00000509961.5:ENST00000512311.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	53	2	2.21238	3.692595	5.17281	0.0218124	7.27294e-4	0.11491	0.0245647
chr2	200976499	200976598	1310925	0	-	0.333333	(0.32,0.35]	chr2	137226	29	UTR3	UTR3:EXON_MRNA	FAM126B	ENSG00000155744.10	ENST00000681958.1:ENST00000418596.7	protein_coding	protein_coding	protein_coding	protein_coding	2	59	2	2.38582	3.69252	4.99922	0.0138529	0.00223907	0.0953077	0.0435144
chr1	155931209	155931306	564832	0	-	0.443299	(0.44,0.476]	chr1	67504	10	INTRON	INTRON	KHDC4	ENSG00000132680.11	ENST00000368321.8:ENST00000368320.7:ENST00000368319.3:ENST00000482337.5:ENST00000466713.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	57	2	2.08211	3.692505	5.3029	0.0130715	0.00102616	0.0996047	0.029231300000000002
chr21	44870186	44870285	7469093	0	-	0.393939	(0.378,0.408]	chr21	761251	42	INTRON	INTRON	PTTG1IP	ENSG00000183255.12	ENST00000397887.7:ENST00000445724.3:ENST00000330938.8:ENST00000494690.5:ENST00000480234.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	68	2	2.15574	3.6924900000000003	5.22924	0.00519611	0.00172721	0.0654762	0.0374701
chr10	68612024	68612124	4441404	0	+	0.29	(0.28,0.32]	chr10	409530	106	INTRON	INTRON	TET1	ENSG00000138336.9	ENST00000373644.5	protein_coding	protein_coding	protein_coding	protein_coding	2	98	2	3.60568	3.692475	3.77927	0.00127168	3.56863e-4	0.032635	0.0169148
chr2	87515317	87515417	826528	0	+	0.51	(0.476,0.515]	chr2	92446	56	INTRON	INTRON	CYTOR:ENSG00000284879	ENSG00000222041.12:ENSG00000284879.1	ENST00000642796.1:ENST00000643589.1:ENST00000642451.1:ENST00000646386.1:ENST00000644478.1:ENST00000409139.6:ENST00000331944.10:ENST00000644125.1:ENST00000643743.1:ENST00000644577.1:ENST00000643276.1:ENST00000409898.2:ENST00000419680.6:ENST00000644976.1:ENST00000643070.1:ENST00000646855.1:ENST00000414584.1:ENST00000455131.5:ENST00000646636.1:ENST00000642293.1:ENST00000423846.5:ENST00000644040.1:ENST00000645138.1:ENST00000437561.2:ENST00000629257.1:ENST00000645729.1:ENST00000413202.1	lncRNA	lncRNA	lncRNA	lncRNA	6	193	2	3.13177	3.6924349999999997	4.2531	2.86358e-5	1.05304e-6	0.00423808	6.32938e-4
chr12	121796742	121796839	5439437	0	-	0.57732000000000006	(0.57,1]	chr12	520128	1	INTRON	INTRON	RHOF:LINC01089	ENSG00000139725.8:ENSG00000212694.8	ENST00000546227.5:ENST00000541657.5:ENST00000545544.1:ENST00000429892.5:ENST00000542933.5:ENST00000537157.5:ENST00000428029.6:ENST00000541694.5:ENST00000543167.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA:processed_transcript	5	90	2	3.59392	3.6923899999999996	3.79086	3.99829e-6	1.87266e-6	0.00131958	9.28079e-4
chr15	72484903	72485003	6059266	0	+	0.36	(0.35,0.378]	chr15	576852	95	INTRON	INTRON	ARIH1	ENSG00000166233.15	ENST00000379887.9:ENST00000570085.5:ENST00000564062.1:ENST00000567762.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	38	2	2.99173	3.69238	4.39303	0.0237246	0.00713365	0.118716	0.0756118
chr8	104497697	104497791	4013804	0	-	0.37234	(0.35,0.378]	chr8	367419	5	CDS	CDS:EXON_MRNA:EXON_LNCRNA	LRP12	ENSG00000147650.12	ENST00000424843.6:ENST00000276654.10:ENST00000520770.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	38	2	2.99173	3.69238	4.39303	0.0237246	0.00713365	0.118716	0.0756118
chr1	246915256	246915352	681793	0	-	0.46875	(0.44,0.476]	chr1	80029	15	INTRON	INTRON	AHCTF1	ENSG00000153207.16	ENST00000648844.2:ENST00000326225.3:ENST00000366508.5	protein_coding	protein_coding	protein_coding	protein_coding	3	105	2	3.14512	3.692335	4.23955	5.78837e-4	1.88744e-5	0.0223209	0.00332085
chr15	85061596	85061696	6089728	0	+	0.33	(0.32,0.35]	chr15	579504	789	INTRON	INTRON	PDE8A	ENSG00000073417.15	ENST00000310298.8:ENST00000557957.5:ENST00000394553.6:ENST00000339708.9:ENST00000478717.5:ENST00000485596.5:ENST00000559742.5:ENST00000559086.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	43	2	2.74415	3.692305	4.64046	0.0198267	0.00724767	0.109608	0.0756327
chr17	82547459	82547559	6692882	0	+	0.33	(0.32,0.35]	chr17	654627	268	INTRON	INTRON	FOXK2	ENSG00000141568.21	ENST00000473637.6:ENST00000335255.10:ENST00000527313.6:ENST00000570585.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	39	2	2.48693	3.692305	4.89768	0.0338094	0.00793135	0.146709	0.076155
chrX	11394866	11394966	7761303	0	-	0.35	(0.32,0.35]	chrX	793522	591	INTRON	INTRON	ARHGAP6	ENSG00000047648.23	ENST00000380736.5:ENST00000337414.9:ENST00000495242.5:ENST00000489330.6:ENST00000380718.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	39	2	2.48693	3.692305	4.89768	0.0338094	0.00793135	0.146709	0.076155
chr2	183134722	183134822	938588	0	+	0.5	(0.476,0.515]	chr2	102995	7	INTRON	INTRON	NUP35	ENSG00000163002.13	ENST00000409798.5:ENST00000374930.7:ENST00000479162.5:ENST00000295119.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	104	2	3.29998	3.692165	4.08435	1.88247e-4	7.63877e-5	0.011951	0.0078038
chr4	85740223	85740323	1991148	0	+	0.53	(0.515,0.57]	chr4	198951	166	INTRON	INTRON	ARHGAP24	ENSG00000138639.18	ENST00000395184.6:ENST00000503995.5:ENST00000512201.5	protein_coding	protein_coding	protein_coding	protein_coding	3	55	2	2.01978	3.69209	5.3644	0.0165522	1.52226e-4	0.102621	0.0106137
chr7	135595029	135595129	3428702	0	+	0.43	(0.408,0.44]	chr7	319690	3	SS5_PROX	SS5_PROX:INTRON	NUP205	ENSG00000155561.15	ENST00000285968.11	protein_coding	protein_coding	protein_coding	protein_coding	5	75	2	2.08773	3.6919250000000003	5.29612	0.00404379	0.00113523	0.0578376	0.0307488
chr6	20455165	20455265	2827982	0	+	0.4	(0.378,0.408]	chr6	265583	151	INTRON	INTRON	E2F3	ENSG00000112242.16	ENST00000346618.8:ENST00000535432.2	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	2.26252	3.6918999999999995	5.12128	0.056222	0.00251746	0.18407	0.0446195
chr12	31972839	31972938	5106738	0	+	0.232323	[0,0.28]	chr12	482333	21	INTRON	INTRON	RESF1	ENSG00000174718.12	ENST00000541981.5:ENST00000540924.5:ENST00000312561.9:ENST00000535596.5:ENST00000397578.7:ENST00000381054.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	44	2	2.69187	3.69189	4.69191	0.0269474	0.0221271	0.123903	0.123442
chr15	58859802	58859902	6037633	0	+	0.27	[0,0.28]	chr15	574962	53	UTR3	UTR3:EXON_MRNA	MINDY2	ENSG00000128923.11	ENST00000559228.6	protein_coding	protein_coding	protein_coding	protein_coding	1	44	2	2.69187	3.69189	4.69191	0.0269474	0.0221271	0.123903	0.123442
chr17	30141114	30141214	6587633	0	+	0.25	[0,0.28]	chr17	640563	130	INTRON	INTRON	NSRP1	ENSG00000126653.18	ENST00000540900.7:ENST00000612959.4:ENST00000247026.10:ENST00000577289.6:ENST00000584154.5:ENST00000394826.8:ENST00000475652.5:ENST00000584317.5:ENST00000583301.5:ENST00000585881.5:ENST00000467446.6:ENST00000580103.6:ENST00000581048.5:ENST00000588614.1:ENST00000589608.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	44	2	2.69187	3.69189	4.69191	0.0269474	0.0221271	0.123903	0.123442
chr18	2580121	2580219	6864478	0	+	0.204082	[0,0.28]	chr18	679858	7	INTRON	INTRON	NDC80	ENSG00000080986.13	ENST00000261597.9:ENST00000576274.2	protein_coding	protein_coding	protein_coding	protein_coding	1	44	2	2.69187	3.69189	4.69191	0.0269474	0.0221271	0.123903	0.123442
chr19	34177246	34177346	7050850	0	+	0.28	[0,0.28]	chr19	703187	41	INTRON	INTRON	LSM14A	ENSG00000257103.9	ENST00000544216.8:ENST00000589878.5:ENST00000540746.6:ENST00000433627.9:ENST00000586157.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	44	2	2.69187	3.69189	4.69191	0.0269474	0.0221271	0.123903	0.123442
chr4	73112588	73112687	2159338	0	-	0.212121	[0,0.28]	chr4	212662	87	INTRON	INTRON	ANKRD17	ENSG00000132466.20	ENST00000358602.9:ENST00000558247.5:ENST00000330838.10:ENST00000509867.6:ENST00000561029.1	protein_coding	protein_coding	protein_coding	protein_coding	1	44	2	2.69187	3.69189	4.69191	0.0269474	0.0221271	0.123903	0.123442
chr7	152238506	152238606	3679294	0	-	0.19	[0,0.28]	chr7	341568	4	SS5_PROX	SS5_PROX:INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000473186.5:ENST00000679882.1:ENST00000681033.1:ENST00000679645.1:ENST00000684550.1:ENST00000489110.2:ENST00000683490.1:ENST00000680479.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	44	2	2.69187	3.69189	4.69191	0.0269474	0.0221271	0.123903	0.123442
chr10	96839629	96839729	4503038	0	+	0.31	(0.28,0.32]	chr10	414529	54	INTRON	INTRON	LCOR	ENSG00000196233.14	ENST00000676067.1:ENST00000676257.1:ENST00000676187.1:ENST00000675151.1:ENST00000675687.1:ENST00000675251.1:ENST00000676123.1:ENST00000371103.8:ENST00000675471.1:ENST00000421806.4:ENST00000675902.1:ENST00000540664.6:ENST00000676414.1:ENST00000675537.1:ENST00000675117.1:ENST00000675125.1:ENST00000356016.7:ENST00000371097.8:ENST00000676381.1:ENST00000674796.1:ENST00000674725.1:ENST00000675971.1:ENST00000676373.1:ENST00000676314.1:ENST00000675915.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	55	2	2.33771	3.69175	5.04579	0.0142701	0.00714672	0.103838	0.0723634
chr16	8038523	8038623	6440894	0	-	0.32	(0.28,0.32]	chr16	620351	309	INTRON	INTRON	ENSG00000260289	ENSG00000260289.2	ENST00000670665.1:ENST00000654046.1:ENST00000567103.2	lncRNA	lncRNA	lncRNA	lncRNA	2	55	2	2.33771	3.69175	5.04579	0.0142701	0.00714672	0.103838	0.0723634
chr16	16659204	16659304	6312459	0	+	0.29	(0.28,0.32]	chr16	604119	3	SS3_PROX	SS3_PROX:INTRON	ENSG00000260126	ENSG00000260126.2	ENST00000567465.2	lncRNA	lncRNA	lncRNA	lncRNA	1	49	2	3.04485	3.6917400000000002	4.33863	0.0207276	0.00894006	0.122348	0.0799922
chr20	3999764	3999864	7309250	0	-	0.31	(0.28,0.32]	chr20	744300	250	INTRON	INTRON	RNF24	ENSG00000101236.17	ENST00000336095.10:ENST00000358395.11:ENST00000545616.2	protein_coding	protein_coding	protein_coding	protein_coding	2	62	2	2.29708	3.69165	5.08622	0.0195087	0.00227525	0.109483	0.0437013
chr13	113211582	113211681	5548307	0	+	0.585859	(0.57,1]	chr13	530119	11	INTRON	INTRON	CUL4A	ENSG00000139842.15	ENST00000375441.7:ENST00000326335.8:ENST00000451881.5:ENST00000617546.4:ENST00000488558.2:ENST00000375440.9:ENST00000474116.5:ENST00000494985.5:ENST00000463426.5:ENST00000498562.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	44	2	3.49517	3.6916149999999996	3.88806	6.03609e-4	6.56297e-5	0.0226059	0.0067007
chr6	147315228	147315321	2989830	0	+	0.215054	[0,0.28]	chr6	280075	2	SS3_PROX	SS3_PROX:INTRON	STXBP5	ENSG00000164506.15	ENST00000321680.11:ENST00000367481.7:ENST00000367480.7	protein_coding	protein_coding	protein_coding	protein_coding	1	44	2	2.43761	3.69161	4.94561	0.0423864	0.0150263	0.161744	0.0994339
chr7	117018411	117018511	3386638	0	+	0.26	[0,0.28]	chr7	317137	30	INTRON	INTRON	ST7:ST7-OT4	ENSG00000004866.22:ENSG00000214188.9	ENST00000393446.6:ENST00000265437.9:ENST00000393451.7:ENST00000438863.5:ENST00000393449.5:ENST00000443979.5:ENST00000323984.8:ENST00000417919.5:ENST00000446490.5:ENST00000471110.5:ENST00000422922.5:ENST00000432298.5:ENST00000449366.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:nonsense_mediated_decay:lncRNA	1	44	2	2.43761	3.69161	4.94561	0.0423864	0.0150263	0.161744	0.0994339
chr5	180517079	180517178	2562090	0	+	0.343434	(0.32,0.35]	chr5	245082	211	INTRON	INTRON	CNOT6	ENSG00000113300.13	ENST00000261951.9:ENST00000393356.7:ENST00000507016.1:ENST00000618123.4:ENST00000502447.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	63	2	2.14793	3.6915649999999998	5.2352	0.0110079	0.0028268	0.0927187	0.0472361
chr11	68613590	68613684	4818900	0	+	0.265957	[0,0.28]	chr11	449078	6	UTR3	UTR3:EXON_MRNA:INTRON	PPP6R3	ENSG00000110075.15	ENST00000534534.5:ENST00000393800.7:ENST00000265637.8:ENST00000524904.5:ENST00000393801.7:ENST00000265636.9:ENST00000529710.5:ENST00000527403.6:ENST00000526307.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	66	2	1.89998	3.691525	5.48307	0.0599553	9.62922e-4	0.169548	0.0285195
chr12	54415112	54415211	5331486	0	-	0.30303	(0.28,0.32]	chr12	508853	18	INTRON	INTRON	ITGA5	ENSG00000161638.11	ENST00000293379.9:ENST00000435631.6:ENST00000553071.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	55	2	2.08149	3.69151	5.30153	0.031124	0.00332518	0.143644	0.0512081
chr7	119617877	119617977	3627515	0	-	0.32	(0.28,0.32]	chr7	337315	1174	INTRON	INTRON	LINC02476	ENSG00000225546.6	ENST00000660268.1	lncRNA	lncRNA	lncRNA	lncRNA	2	55	2	2.08149	3.69151	5.30153	0.031124	0.00332518	0.143644	0.0512081
chr10	3778258	3778357	4543127	0	-	0.444444	(0.44,0.476]	chr10	419496	24	UTR3	UTR3:EXON_MRNA:INTRON	KLF6	ENSG00000067082.15	ENST00000497571.6:ENST00000461124.1:ENST00000542957.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	73	2	1.892	3.691485	5.49097	0.00935701	4.8612e-4	0.0858596	0.0203841
chr19	49879604	49879691	7091654	0	+	0.321839	(0.32,0.35]	chr19	710559	1	SS5_PROX	SS5_PROX:INTRON	TBC1D17	ENSG00000104946.14	ENST00000535102.6:ENST00000221543.10:ENST00000594996.5:ENST00000598789.5:ENST00000599049.6:ENST00000596243.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	52	2	2.25173	3.6914800000000003	5.13123	0.0180122	0.00394704	0.114436	0.0548259
chr5	104109202	104109302	2441507	0	+	0.37	(0.35,0.378]	chr5	234410	39	INTRON	INTRON	LINC02163	ENSG00000251026.2	ENST00000662211.1:ENST00000666145.1	lncRNA	lncRNA	lncRNA	lncRNA	3	60	2	2.02424	3.6912599999999998	5.35828	0.0164934	0.00135282	0.110301	0.0336321
chr14	50231012	50231101	5888571	0	-	0.494382	(0.476,0.515]	chr14	559005	3	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	SOS2	ENSG00000100485.12	ENST00000216373.10:ENST00000543680.5:ENST00000556469.5:ENST00000555666.1:ENST00000556452.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	52	2	1.79693	3.6911899999999997	5.58545	0.0649782	1.04881e-4	0.179417	0.00863456
chr17	59838886	59838984	6643723	0	+	0.387755	(0.378,0.408]	chr17	648784	6	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	VMP1	ENSG00000062716.13	ENST00000262291.9:ENST00000592619.5:ENST00000591877.1:ENST00000591782.1:ENST00000588617.1:ENST00000592790.1:ENST00000587470.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	239	2	3.65309	3.6910800000000004	3.72907	5.66374e-6	8.50037e-7	0.00177762	5.20245e-4
chr2	9524435	9524533	1064163	0	-	0.5	(0.476,0.515]	chr2	113509	7	INTRON	INTRON	ADAM17	ENSG00000151694.14	ENST00000310823.8:ENST00000648548.1:ENST00000649227.1:ENST00000648857.1:ENST00000647979.1:ENST00000647610.1:ENST00000650116.1:ENST00000649686.1:ENST00000647622.1:ENST00000649972.1:ENST00000650241.1:ENST00000618923.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	51	2	2.85177	3.6910000000000003	4.53023	0.0119748	0.00169916	0.0899583	0.0381936
chr3	149083735	149083835	1840973	0	-	0.39	(0.378,0.408]	chr3	185199	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	HLTF	ENSG00000071794.16	ENST00000310053.10:ENST00000465259.5:ENST00000392912.6:ENST00000494055.5:ENST00000481663.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	74	2	1.74732	3.690975	5.63463	0.0166132	3.59226e-4	0.110511	0.0175484
chr21	34109442	34109542	7401454	0	+	0.46	(0.44,0.476]	chr21	753975	33	INTRON	INTRON	MRPS6	ENSG00000243927.6	ENST00000488492.5:ENST00000477091.5:ENST00000399312.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	57	2	2.12992	3.690855	5.25179	0.010975	0.00124521	0.092635	0.0322969
chr16	71917730	71917826	6386834	0	+	0.3125	(0.28,0.32]	chr16	614102	2	INTRON	INTRON	IST1	ENSG00000182149.21	ENST00000544564.5:ENST00000541571.6:ENST00000535424.5:ENST00000606369.5:ENST00000537613.5:ENST00000424485.6:ENST00000566536.5:ENST00000378799.11:ENST00000538565.5:ENST00000329908.12:ENST00000538850.5:ENST00000541918.5:ENST00000378798.9:ENST00000534994.5:ENST00000539186.5:ENST00000439924.6:ENST00000626438.1:ENST00000545518.1:ENST00000456820.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	56	2	2.51426	3.690785	4.86731	0.0116253	0.00781326	0.0889104	0.0788246
chr2	27583142	27583242	717931	0	+	0.52	(0.515,0.57]	chr2	83344	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ZNF512	ENSG00000243943.10	ENST00000413371.6:ENST00000416005.6:ENST00000556601.5:ENST00000379717.5:ENST00000355467.6:ENST00000494548.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	36	2	2.12971	3.69077	5.25183	0.0757903	2.6074e-4	0.194427	0.014326
chr21	35030943	35031043	7448698	0	-	0.4	(0.378,0.408]	chr21	759873	1376	INTRON	INTRON	RUNX1	ENSG00000159216.19	ENST00000300305.7:ENST00000675419.1:ENST00000437180.5:ENST00000482318.5:ENST00000455571.5:ENST00000475045.6:ENST00000416754.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	39	2	2.46373	3.690745	4.91776	0.0382831	0.00196368	0.141795	0.0411469
chr15	41366759	41366859	6005125	0	+	0.36	(0.35,0.378]	chr15	571345	5	INTRON	INTRON	NUSAP1	ENSG00000137804.14	ENST00000668273.1:ENST00000260359.10:ENST00000558123.5:ENST00000414849.6:ENST00000450592.6:ENST00000559596.6:ENST00000560747.5:ENST00000560177.5:ENST00000557840.5:ENST00000560898.5:ENST00000560318.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	50	2	2.39583	3.6907200000000002	4.98561	0.0107976	0.00474226	0.0920575	0.0600445
chr4	17632616	17632715	1927034	0	+	0.353535	(0.35,0.378]	chr4	193701	71	UTR3	UTR3:EXON_MRNA	MED28	ENSG00000118579.13	ENST00000237380.12	protein_coding	protein_coding	protein_coding	protein_coding	2	50	2	2.39583	3.6907200000000002	4.98561	0.0107976	0.00474226	0.0920575	0.0600445
chr11	86005545	86005645	5014194	0	-	0.51	(0.476,0.515]	chr11	472970	17	INTRON	INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000630913.2:ENST00000528398.5:ENST00000356360.9:ENST00000534412.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	167	2	3.68532	3.6906999999999996	3.69608	3.392e-5	2.56139e-6	0.0049119	0.00101846
chr1	19166521	19166621	386364	0	-	0.4	(0.378,0.408]	chr1	45999	1	SS5_PROX	SS5_PROX:INTRON	UBR4	ENSG00000127481.15	ENST00000375254.8:ENST00000417040.1:ENST00000419533.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	39	2	2.53503	3.6906499999999998	4.84627	0.0319942	0.00254319	0.13174	0.0465056
chr2	26286464	26286563	714590	0	+	0.40404	(0.378,0.408]	chr2	82557	5	INTRON	INTRON	HADHB	ENSG00000138029.14	ENST00000537713.5:ENST00000405867.7:ENST00000317799.10:ENST00000494615.1:ENST00000545822.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	39	2	2.53503	3.6906499999999998	4.84627	0.0319942	0.00254319	0.13174	0.0465056
chr7	32882925	32883025	3515535	0	-	0.39	(0.378,0.408]	chr7	327782	26	INTRON	INTRON	KBTBD2	ENSG00000170852.12	ENST00000304056.9:ENST00000485611.5:ENST00000452926.1:ENST00000453627.1:ENST00000423022.1:ENST00000424468.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	39	2	2.53503	3.6906499999999998	4.84627	0.0319942	0.00254319	0.13174	0.0465056
chr13	79405503	79405603	5626402	0	-	0.57	(0.515,0.57]	chr13	536668	4	SS5_PROX	SS5_PROX:INTRON	RBM26	ENSG00000139746.16	ENST00000438737.3:ENST00000438724.5:ENST00000622611.4:ENST00000267229.11:ENST00000472143.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	67	2	2.05155	3.6905600000000005	5.32957	0.00440913	4.06834e-4	0.0609369	0.0185763
chr1	220019487	220019579	638913	0	-	0.336957	(0.32,0.35]	chr1	75278	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	EPRS1	ENSG00000136628.18	ENST00000366923.8:ENST00000609181.5:ENST00000477030.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	52	2	2.30476	3.690525	5.07629	0.0151817	0.00468114	0.108535	0.0600108
chr19	5097659	5097758	7004717	0	+	0.616162	(0.57,1]	chr19	694855	148	INTRON	INTRON	KDM4B	ENSG00000127663.15	ENST00000159111.9:ENST00000611640.4:ENST00000381759.8:ENST00000536461.5:ENST00000589104.5:ENST00000588961.1:ENST00000588361.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	32	2	2.33295	3.690525	5.0481	0.0122896	1.32594e-4	0.091087	0.00992554
chr8	23065760	23065860	3923914	0	-	0.33	(0.32,0.35]	chr8	359108	160	INTRON	INTRON	TNFRSF10B	ENSG00000120889.13	ENST00000276431.9:ENST00000347739.3:ENST00000523504.5:ENST00000519028.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	52	2	2.30476	3.690525	5.07629	0.0151817	0.00468114	0.108535	0.0600108
chr12	69244672	69244771	5163548	0	+	0.363636	(0.35,0.378]	chr12	488988	46	INTRON	INTRON	CPSF6	ENSG00000111605.18	ENST00000435070.7:ENST00000550075.5:ENST00000650046.1:ENST00000456847.7:ENST00000266679.8:ENST00000550987.5:ENST00000551516.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	60	2	1.97646	3.690455	5.40445	0.0193942	0.00114224	0.119831	0.0307966
chr1	229304600	229304700	333618	0	+	0.45	(0.44,0.476]	chr1	38856	9	UTR3	UTR3:EXON_MRNA	RAB4A	ENSG00000168118.12	ENST00000618010.4:ENST00000366690.5	protein_coding	protein_coding	protein_coding	protein_coding	1	37	2	2.29425	3.69042	5.08659	0.0518406	0.00226401	0.176696	0.0425438
chr9	137645637	137645736	4223740	0	+	0.474747	(0.44,0.476]	chr9	388158	77	INTRON	INTRON	EHMT1	ENSG00000181090.21	ENST00000462484.5:ENST00000371394.6:ENST00000630754.2:ENST00000460843.6:ENST00000626216.2:ENST00000637593.1:ENST00000629335.2:ENST00000637335.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	37	2	2.29425	3.69042	5.08659	0.0518406	0.00226401	0.176696	0.0425438
chr10	22585936	22586036	4579206	0	-	0.33	(0.32,0.35]	chr10	421998	121	INTRON	INTRON	PIP4K2A	ENSG00000150867.14	ENST00000376573.9:ENST00000323883.11:ENST00000545335.5:ENST00000604912.1:ENST00000422321.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	52	2	2.19668	3.690415	5.18415	0.021398	0.00333629	0.123719	0.0512081
chr1	246164161	246164261	677274	0	-	0.49	(0.476,0.515]	chr1	79721	679	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000391836.3:ENST00000453676.5:ENST00000462422.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	141	2	3.56952	3.6904	3.81128	4.10985e-5	1.64105e-5	0.00519615	0.00324999
chr7	72940231	72940313	3330411	0	+	0.487805	(0.476,0.515]	chr7	309615	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	POM121	ENSG00000196313.13	ENST00000627934.3:ENST00000395270.5:ENST00000434423.5	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	2.3223	3.690385	5.05847	0.0519312	0.00108081	0.159306	0.0300133
chr16	69373649	69373748	6508077	0	-	0.575758	(0.57,1]	chr16	630123	9	INTRON	INTRON	TERF2	ENSG00000132604.11	ENST00000254942.8:ENST00000566750.5:ENST00000569542.6:ENST00000566257.5:ENST00000569611.6:ENST00000567296.6:ENST00000569280.1:ENST00000567841.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	32	2	2.50742	3.6903750000000004	4.87333	0.00631173	3.21412e-4	0.0687526	0.0159645
chr17	75151724	75151821	6836063	0	-	0.494845	(0.476,0.515]	chr17	675489	22	INTRON	INTRON	JPT1	ENSG00000189159.16	ENST00000409753.8:ENST00000476258.5:ENST00000482348.5:ENST00000304834.11:ENST00000356033.8:ENST00000470924.5:ENST00000481647.5:ENST00000580380.1:ENST00000581874.1:ENST00000584079.5:ENST00000465454.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	40	2	3.05152	3.690335	4.32915	0.0124637	0.0064848	0.0973643	0.0699952
chr7	141604751	141604850	3439568	0	+	0.454545	(0.44,0.476]	chr7	320587	31	INTRON	INTRON	AGK	ENSG00000006530.18	ENST00000629555.2:ENST00000473247.5:ENST00000649365.1:ENST00000649014.1:ENST00000650365.1:ENST00000648489.1:ENST00000649286.2:ENST00000648690.1:ENST00000649790.1:ENST00000473884.5:ENST00000649914.1:ENST00000647568.1:ENST00000648395.1:ENST00000648068.1:ENST00000650547.1:ENST00000650006.1:ENST00000649538.1:ENST00000494688.1:ENST00000465241.5:ENST00000647898.1:ENST00000496273.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	48	2	2.0776	3.69025	5.3029	0.0292951	0.00102616	0.141862	0.029231300000000002
chr13	25312283	25312381	5457280	0	+	0.285714	(0.28,0.32]	chr13	522895	19	INTRON	INTRON	NUP58	ENSG00000139496.17	ENST00000481980.2:ENST00000490231.6:ENST00000695571.1:ENST00000477876.2:ENST00000695572.1:ENST00000463407.6:ENST00000695573.1:ENST00000381736.8:ENST00000695583.1:ENST00000465068.5:ENST00000466694.6:ENST00000381718.8:ENST00000695575.1:ENST00000695574.1:ENST00000495460.2:ENST00000381747.7:ENST00000695576.1:ENST00000394327.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	66	2	1.98806	3.690205	5.39235	0.0199553	0.0024844	0.120668	0.0446195
chr11	68047176	68047254	4815722	0	+	0.538462	(0.515,0.57]	chr11	448691	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TCIRG1	ENSG00000110719.10	ENST00000265686.8:ENST00000532635.5:ENST00000529364.1:ENST00000525724.5:ENST00000528981.5:ENST00000533005.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	146	2	3.56572	3.690175	3.81463	6.89472e-6	6.3757e-6	0.00196873	0.0017789
chr15	25429093	25429193	6121743	0	-	0.3	(0.28,0.32]	chr15	582937	16	INTRON	INTRON	UBE3A	ENSG00000114062.22	ENST00000648336.2:ENST00000438097.6:ENST00000635914.1:ENST00000638155.1:ENST00000637886.1:ENST00000638011.1:ENST00000649550.1:ENST00000650110.1:ENST00000630424.2:ENST00000566215.5:ENST00000428984.6:ENST00000675177.1:ENST00000675593.1:ENST00000625778.3:ENST00000675000.1:ENST00000626793.2:ENST00000628733.2:ENST00000630907.2:ENST00000675038.1:ENST00000629886.2:ENST00000628267.2:ENST00000629252.2:ENST00000625681.2:ENST00000627018.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	66	2	1.90249	3.69014	5.47779	0.0261803	0.00187048	0.133676	0.0390476
chr7	157338499	157338593	3455314	0	+	0.5	(0.476,0.515]	chr7	323048	3	INTRON	INTRON	DNAJB6	ENSG00000105993.15	ENST00000441561.5:ENST00000429029.6:ENST00000262177.9:ENST00000486083.6:ENST00000417758.5:ENST00000459889.5:ENST00000443280.5:ENST00000488001.5:ENST00000441291.5:ENST00000437030.5:ENST00000412557.5:ENST00000453383.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	61	2	1.88582	3.69008	5.49434	0.0273268	1.62782e-4	0.123904	0.0109774
chr10	113888758	113888857	4527189	0	+	0.343434	(0.32,0.35]	chr10	417446	40	INTRON	INTRON	NHLRC2	ENSG00000196865.4	ENST00000369301.3	protein_coding	protein_coding	protein_coding	protein_coding	1	42	2	2.4458	3.690025	4.93425	0.0425977	0.00281048	0.148082	0.0488779
chr14	60279042	60279140	5736509	0	+	0.326531	(0.32,0.35]	chr14	544843	13	INTRON	INTRON	PPM1A	ENSG00000100614.18	ENST00000325642.7:ENST00000531143.6:ENST00000532036.2:ENST00000395076.9:ENST00000325658.3:ENST00000528241.2:ENST00000525399.2:ENST00000531937.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	42	2	2.4458	3.690025	4.93425	0.0425977	0.00281048	0.148082	0.0488779
chr7	124847498	124847588	3632928	0	-	0.344444	(0.32,0.35]	chr7	337642	1	INTRON	INTRON	POT1	ENSG00000128513.16	ENST00000430927.6:ENST00000357628.8:ENST00000393329.5:ENST00000653274.1:ENST00000661898.1:ENST00000664330.1:ENST00000657892.1:ENST00000662531.1:ENST00000653241.1:ENST00000653892.1:ENST00000664366.1:ENST00000655761.1:ENST00000668382.1:ENST00000654766.1:ENST00000657333.1:ENST00000653819.1:ENST00000609106.5:ENST00000607932.5:ENST00000608057.5:ENST00000446993.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	42	2	2.4458	3.690025	4.93425	0.0425977	0.00281048	0.148082	0.0488779
chr7	152141323	152141423	3678262	0	-	0.33	(0.32,0.35]	chr7	341376	2	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000360104.8:ENST00000262189.11:ENST00000418061.2:ENST00000680877.1:ENST00000424877.6:ENST00000679560.1:ENST00000682040.1:ENST00000683640.1:ENST00000682116.1:ENST00000683120.1:ENST00000681923.1:ENST00000679393.1:ENST00000683200.1:ENST00000684768.1:ENST00000680029.1:ENST00000683337.1:ENST00000682629.1:ENST00000683178.1:ENST00000682137.1:ENST00000683502.1:ENST00000684261.1:ENST00000682283.1:ENST00000473186.5:ENST00000684649.1:ENST00000679882.1:ENST00000683621.1:ENST00000679567.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	42	2	2.4458	3.690025	4.93425	0.0425977	0.00281048	0.148082	0.0488779
chr17	42607271	42607369	6773637	0	-	0.44898	(0.44,0.476]	chr17	667228	16	INTRON	INTRON	RETREG3	ENSG00000141699.11	ENST00000589797.5:ENST00000309428.10:ENST00000585894.5:ENST00000586870.5:ENST00000585726.5:ENST00000591547.5:ENST00000593251.5:ENST00000588423.1:ENST00000586796.1:ENST00000590541.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	38	2	2.38219	3.690005	4.99782	0.045456	0.0013223	0.149888	0.0333932
chr2	181000537	181000637	936171	0	+	0.45	(0.44,0.476]	chr2	102627	106	INTRON	INTRON	UBE2E3	ENSG00000170035.16	ENST00000602303.5:ENST00000602959.5:ENST00000602479.5:ENST00000392415.6:ENST00000602291.5:ENST00000410062.9:ENST00000602499.5:ENST00000602710.5:ENST00000602762.5:ENST00000602888.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	51	2	2.08277	3.69	5.29723	0.0309998	3.83422e-4	0.13151	0.017699199999999998
chr1	65342012	65342112	136415	0	+	0.41	(0.408,0.44]	chr1	15352	317	INTRON	INTRON	DNAJC6	ENSG00000116675.16	ENST00000463018.5:ENST00000494710.6:ENST00000263441.11:ENST00000395325.7:ENST00000483402.1:ENST00000371069.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	57	2	2.03431	3.689895	5.34548	0.0154896	9.40657e-4	0.108998	0.0280776
chr1	156770531	156770630	231967	0	+	0.50505	(0.476,0.515]	chr1	27482	19	INTRON	INTRON	PRCC	ENSG00000143294.15	ENST00000491853.5:ENST00000271526.9:ENST00000473387.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	38	2	2.7646	3.689895	4.61519	0.0162075	0.00528365	0.101453	0.0656295
chr9	107313321	107313420	4183682	0	+	0.50505	(0.476,0.515]	chr9	381568	12	INTRON	INTRON	RAD23B	ENSG00000119318.13	ENST00000358015.8:ENST00000416373.6:ENST00000457811.1	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	2.7646	3.689895	4.61519	0.0162075	0.00528365	0.101453	0.0656295
chr13	98545396	98545496	5643476	0	-	0.53	(0.515,0.57]	chr13	537505	235	INTRON	INTRON	STK24	ENSG00000102572.15	ENST00000539966.6:ENST00000397517.6:ENST00000491878.5:ENST00000481288.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	45	2	1.94945	3.6898199999999997	5.43019	0.0414068	2.60422e-4	0.161557	0.0148796
chr7	101960001	101960101	3367794	0	+	0.53	(0.515,0.57]	chr7	315232	4	SS5_PROX	SS5_PROX:INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000497815.5:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000558469.5:ENST00000560541.5:ENST00000558836.5:ENST00000606749.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	45	2	1.94945	3.6898199999999997	5.43019	0.0414068	2.60422e-4	0.161557	0.0148796
chr21	34870566	34870666	7447090	0	-	0.49	(0.476,0.515]	chr21	759849	106	INTRON	INTRON	RUNX1	ENSG00000159216.19	ENST00000300305.7:ENST00000675419.1:ENST00000437180.5:ENST00000344691.8:ENST00000482318.5:ENST00000399240.5:ENST00000358356.9:ENST00000399237.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	57	2	2.06898	3.68978	5.31058	0.0137491	9.15544e-4	0.10247	0.0278396
chr7	97173912	97174012	3357523	0	+	0.47	(0.44,0.476]	chr7	313218	307	INTRON	INTRON	SDHAF3	ENSG00000196636.8	ENST00000432641.3:ENST00000360382.4:ENST00000479853.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	38	2	2.67572	3.689635	4.70355	0.0212064	0.00383786	0.113017	0.0562562
chr1	40044883	40044983	79662	0	+	0.55	(0.515,0.57]	chr1	10330	30	INTRON	INTRON	CAP1	ENSG00000131236.18	ENST00000372797.7:ENST00000372802.5:ENST00000449311.5:ENST00000421589.5:ENST00000414893.5:ENST00000372792.7:ENST00000372805.8:ENST00000414281.5:ENST00000420216.5:ENST00000372798.5:ENST00000340450.7:ENST00000435719.5:ENST00000427843.5:ENST00000424977.1:ENST00000417287.5:ENST00000446031.1	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	3.09002	3.689615	4.28921	0.00990051	0.00491099	0.0877296	0.0609494
chr19	1836545	1836644	7113712	0	-	0.545455	(0.515,0.57]	chr19	714891	53	INTRON	INTRON	REXO1	ENSG00000079313.15	ENST00000170168.9:ENST00000587524.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	36	2	3.09002	3.689615	4.28921	0.00990051	0.00491099	0.0877296	0.0609494
chr4	76145129	76145223	2164411	0	-	0.56383	(0.515,0.57]	chr4	213487	8	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	NUP54	ENSG00000138750.16	ENST00000695546.1:ENST00000695547.1:ENST00000695552.1:ENST00000507257.6:ENST00000264883.8:ENST00000510569.6:ENST00000515460.6:ENST00000695554.1:ENST00000695553.1:ENST00000695548.1:ENST00000695551.1:ENST00000695556.1:ENST00000695549.1:ENST00000695550.1:ENST00000695555.1:ENST00000514313.2:ENST00000514987.6:ENST00000502850.5:ENST00000508465.6:ENST00000512151.5:ENST00000504173.1:ENST00000695557.1:ENST00000514307.5:ENST00000508583.6:ENST00000506098.5:ENST00000510884.5:ENST00000513352.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	36	2	3.09002	3.689615	4.28921	0.00990051	0.00491099	0.0877296	0.0609494
chr4	87096464	87096564	1995423	0	+	0.42	(0.408,0.44]	chr4	199082	11	INTRON	INTRON	AFF1	ENSG00000172493.23	ENST00000395146.9:ENST00000674009.1:ENST00000503477.5:ENST00000544085.6:ENST00000307808.10:ENST00000511722.5:ENST00000514970.2	protein_coding	protein_coding	protein_coding	protein_coding	2	52	2	2.31565	3.68954	5.06343	0.0154718	0.00101725	0.100909	0.0293497
chr16	21468578	21468674	6461029	0	-	0.489583	(0.476,0.515]	chr16	623315	9	INTRON	INTRON	SMG1P3	ENSG00000180747.15	ENST00000522480.5:ENST00000522841.6	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	1	37	2	3.13389	3.68945	4.24501	0.0247713	0.00405473	0.12011	0.0578376
chr6	38680726	38680824	3090049	0	-	0.479592	(0.476,0.515]	chr6	289103	30	INTRON	INTRON	GLO1	ENSG00000124767.7	ENST00000373365.5:ENST00000470973.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	37	2	3.13389	3.68945	4.24501	0.0247713	0.00405473	0.12011	0.0578376
chr10	74176986	74177086	4456026	0	+	0.56	(0.515,0.57]	chr10	411533	1	SS5_PROX	SS5_PROX:INTRON	ADK	ENSG00000156110.15	ENST00000672429.1:ENST00000539909.6:ENST00000286621.7:ENST00000478611.2:ENST00000673352.1:ENST00000673310.1:ENST00000672920.1:ENST00000672394.1:ENST00000372734.5:ENST00000673027.1:ENST00000541550.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	34	2	2.60899	3.6894150000000003	4.76984	0.0232669	0.00198034	0.118148	0.0411469
chr16	89378219	89378319	6542467	0	-	0.36	(0.35,0.378]	chr16	634240	47	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000647238.1:ENST00000644045.1:ENST00000643147.1:ENST00000644139.1:ENST00000568512.6:ENST00000566973.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	85	2	3.64252	3.689305	3.73609	8.02255e-4	3.31057e-4	0.0262199	0.0161599
chr16	24544966	24545066	6327709	0	+	0.43	(0.408,0.44]	chr16	605824	38	INTRON	INTRON	RBBP6	ENSG00000122257.20	ENST00000564314.5:ENST00000567686.5:ENST00000568015.5:ENST00000319715.10:ENST00000452655.6:ENST00000381039.7:ENST00000646282.1:ENST00000348022.6	protein_coding	protein_coding	protein_coding	protein_coding	3	105	2	3.31435	3.68907	4.06379	1.71418e-4	9.31794e-5	0.0113605	0.00857086
chr20	35729651	35729751	7336424	0	-	0.44	(0.408,0.44]	chr20	747470	1	SS3_PROX	SS3_PROX:INTRON	RBM39	ENSG00000131051.24	ENST00000253363.11:ENST00000639702.1:ENST00000656873.1:ENST00000463004.5:ENST00000361162.10:ENST00000461283.5:ENST00000403542.6:ENST00000338163.10:ENST00000528062.7:ENST00000429968.5:ENST00000444878.5:ENST00000665058.1:ENST00000492779.5:ENST00000374038.7:ENST00000412738.5:ENST00000434927.5:ENST00000425184.5:ENST00000481037.5:ENST00000455343.5:ENST00000416108.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	37	2	3.14706	3.6890099999999997	4.23096	0.0278028	0.00382411	0.123904	0.0562562
chr4	110147191	110147291	2227220	0	-	0.24	[0,0.28]	chr4	218024	412	INTRON	INTRON	ELOVL6	ENSG00000170522.10	ENST00000394607.7:ENST00000302274.8:ENST00000514184.5:ENST00000506625.5:ENST00000506461.1:ENST00000503885.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	72	2	1.71402	3.6888750000000003	5.66373	0.047753	0.00196371	0.170327	0.0401678
chr3	48717057	48717143	1689708	0	-	0.534884	(0.515,0.57]	chr3	172883	1	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	IP6K2	ENSG00000068745.15	ENST00000328631.10:ENST00000449563.5:ENST00000413654.5:ENST00000443853.5:ENST00000437427.5:ENST00000412850.5:ENST00000454335.5:ENST00000340879.8:ENST00000432678.6:ENST00000433104.2:ENST00000416707.1:ENST00000431721.6:ENST00000449610.5:ENST00000413298.5:ENST00000446860.5:ENST00000412795.5:ENST00000417896.1:ENST00000443964.1:ENST00000436134.5:ENST00000440424.5:ENST00000434860.1:ENST00000424035.1:ENST00000476645.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	70	2	1.72014	3.68876	5.65738	0.0185015	3.32659e-5	0.108861	0.00461719
chr15	66499955	66500055	6210605	0	-	0.49	(0.476,0.515]	chr15	592716	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPL4	ENSG00000174444.15	ENST00000307961.11:ENST00000567229.5:ENST00000568588.5:ENST00000561775.5:ENST00000569696.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	164	2	3.45329	3.6886900000000002	3.92409	1.13525e-4	6.72727e-6	0.009124	0.00194394
chr15	29778254	29778354	6124977	0	-	0.35	(0.32,0.35]	chr15	583574	45	INTRON	INTRON	TJP1	ENSG00000104067.17	ENST00000346128.10:ENST00000614355.5:ENST00000400011.6:ENST00000356107.11:ENST00000677774.1:ENST00000545208.6:ENST00000495972.6	protein_coding	protein_coding	protein_coding	protein_coding	1	42	2	2.37794	3.68858	4.99922	0.0498601	0.00223907	0.156383	0.0435144
chr4	105407644	105407744	2216012	0	-	0.34	(0.32,0.35]	chr4	217232	13	INTRON	INTRON	PPA2	ENSG00000138777.20	ENST00000341695.10:ENST00000348706.9:ENST00000509031.5:ENST00000351450.10:ENST00000354147.7:ENST00000432483.6:ENST00000515567.5:ENST00000503171.5:ENST00000510015.5:ENST00000509426.5:ENST00000508518.5:ENST00000514209.5:ENST00000506815.5:ENST00000457404.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	42	2	2.37794	3.68858	4.99922	0.0498601	0.00223907	0.156383	0.0435144
chr6	131638776	131638876	2960198	0	+	0.35	(0.32,0.35]	chr6	278269	2	SS5_PROX	SS5_PROX:INTRON	ENPP3	ENSG00000154269.15	ENST00000427707.5:ENST00000414305.5:ENST00000357639.8:ENST00000358229.6:ENST00000423831.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	42	2	2.37794	3.68858	4.99922	0.0498601	0.00223907	0.156383	0.0435144
chr8	123338910	123339010	4042037	0	-	0.33	(0.32,0.35]	chr8	368681	2	SS5_PROX	SS5_PROX:INTRON	ATAD2	ENSG00000156802.13	ENST00000287394.10:ENST00000517666.5:ENST00000521903.5:ENST00000519124.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	42	2	2.37794	3.68858	4.99922	0.0498601	0.00223907	0.156383	0.0435144
chr3	198189836	198189924	1600060	0	+	0.443182	(0.44,0.476]	chr3	165889	1	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO	FAM157A	ENSG00000236438.7	ENST00000634862.1:ENST00000615155.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	2	78	2	3.54632	3.68851	3.8307	9.9951e-4	1.81621e-4	0.0288906	0.0117212
chr1	151198550	151198639	224866	0	+	0.595506	(0.57,1]	chr1	25627	1	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	PIP5K1A	ENSG00000143398.20	ENST00000447555.5:ENST00000349792.9:ENST00000368888.9:ENST00000409426.5:ENST00000368890.8:ENST00000441902.6:ENST00000424999.1	protein_coding	protein_coding	protein_coding	protein_coding	2	34	2	1.9042	3.688485	5.47277	0.0476976	1.12467e-5	0.153019	0.0024806
chr16	23563030	23563130	6323113	0	+	0.34	(0.32,0.35]	chr16	605555	3	SS5_PROX	SS5_PROX:INTRON	UBFD1	ENSG00000103353.16	ENST00000567212.5:ENST00000395878.8:ENST00000571064.5:ENST00000563366.5:ENST00000565634.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	53	2	2.54408	3.688475	4.83287	0.0095071	0.00659077	0.0817766	0.0737338
chr5	97134260	97134360	2436313	0	+	0.49	(0.476,0.515]	chr5	234094	308	INTRON	INTRON	LIX1-AS1	ENSG00000251513.2	ENST00000504578.2	lncRNA	lncRNA	lncRNA	lncRNA	1	37	2	2.28264	3.6884349999999997	5.09423	0.0534132	0.00204588	0.179876	0.04086
chr1	8422226	8422326	369803	0	-	0.34	(0.32,0.35]	chr1	43439	1	SS5_PROX	SS5_PROX:INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000377464.5:ENST00000400907.6:ENST00000476556.5:ENST00000656437.1:ENST00000488215.5:ENST00000460659.5:ENST00000492766.5:ENST00000465125.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	42	2	2.51061	3.688415	4.86622	0.0364463	0.00354075	0.138959	0.0546236
chr16	89289265	89289360	6541552	0	-	0.336842	(0.32,0.35]	chr16	634152	2	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000644285.1:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000645212.1:ENST00000646345.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	42	2	2.51061	3.688415	4.86622	0.0364463	0.00354075	0.138959	0.0546236
chr3	42607921	42608020	1406044	0	+	0.333333	(0.32,0.35]	chr3	147651	50	INTRON	INTRON	NKTR	ENSG00000114857.19	ENST00000468735.6:ENST00000460910.5:ENST00000487466.5:ENST00000429888.5:ENST00000232978.13:ENST00000442970.5:ENST00000445842.1:ENST00000478488.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	42	2	2.51061	3.688415	4.86622	0.0364463	0.00354075	0.138959	0.0546236
chr3	180608247	180608338	1568052	0	+	0.32967	(0.32,0.35]	chr3	162330	6	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TTC14	ENSG00000163728.11	ENST00000296015.9:ENST00000412756.6:ENST00000465065.5:ENST00000382584.8:ENST00000470669.5:ENST00000465625.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	42	2	2.51061	3.688415	4.86622	0.0364463	0.00354075	0.138959	0.0546236
chr8	108233429	108233526	4023114	0	-	0.350515	(0.35,0.378]	chr8	367659	35	UTR3	UTR3:EXON_MRNA:INTRON	EIF3E	ENSG00000104408.11	ENST00000678042.1:ENST00000678773.1:ENST00000677409.1:ENST00000676892.1:ENST00000523674.2:ENST00000677674.1:ENST00000220849.10:ENST00000678937.1:ENST00000677084.1:ENST00000676706.1:ENST00000518100.6:ENST00000677040.1:ENST00000676698.1:ENST00000522352.6:ENST00000521297.2:ENST00000677501.1:ENST00000519030.6:ENST00000519627.2:ENST00000518345.2:ENST00000522445.6:ENST00000678334.1:ENST00000678023.1:ENST00000678797.1:ENST00000677614.1:ENST00000676642.1:ENST00000677965.1:ENST00000678901.1:ENST00000678243.1:ENST00000676663.1:ENST00000679198.1:ENST00000521614.6:ENST00000678004.1:ENST00000678881.1:ENST00000677590.1:ENST00000677272.1:ENST00000676530.1:ENST00000677746.1:ENST00000676931.1:ENST00000677447.1:ENST00000676548.1:ENST00000676487.1:ENST00000521440.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	113	2	3.42942	3.6883999999999997	3.94738	2.06843e-4	1.04286e-4	0.0131276	0.00863456
chr1	163331489	163331588	239629	0	+	0.272727	[0,0.28]	chr1	28870	22	INTRON	INTRON	NUF2	ENSG00000143228.13	ENST00000534289.5:ENST00000450453.6:ENST00000524800.5:ENST00000367900.7:ENST00000442820.5:ENST00000271452.8:ENST00000490881.5:ENST00000497990.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	76	2	2.37401	3.68832	5.00263	0.013055	0.00568456	0.093385	0.0678837
chr14	105222184	105222274	5973553	0	-	0.333333	(0.32,0.35]	chr14	567995	4	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	BRF1	ENSG00000185024.18	ENST00000547530.7:ENST00000379937.6:ENST00000392557.8:ENST00000446501.6:ENST00000635152.1:ENST00000551787.5:ENST00000619151.4:ENST00000327359.7:ENST00000440513.7:ENST00000547562.5:ENST00000549655.5:ENST00000552127.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	57	2	1.94202	3.68831	5.4346	0.0486128	4.09682e-4	0.153946	0.0181306
chr16	70547673	70547771	6385388	0	+	0.561224	(0.515,0.57]	chr16	613923	28	INTRON	INTRON	SF3B3	ENSG00000189091.13	ENST00000302516.10:ENST00000572365.1:ENST00000567635.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	90	2	3.49655	3.6882900000000003	3.88003	1.52864e-4	4.90491e-5	0.0112857	0.00572797
chr19	10669718	10669817	7013367	0	+	0.414141	(0.408,0.44]	chr19	696763	27	INTRON	INTRON	ILF3	ENSG00000129351.17	ENST00000449870.5:ENST00000587928.5:ENST00000407004.7:ENST00000589998.5:ENST00000589600.5:ENST00000589283.5:ENST00000590009.5:ENST00000593199.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	48	2	2.55103	3.688165	4.8253	0.00587353	0.0056738	0.0690758	0.0653997
chr20	63887173	63887270	7300910	0	+	0.42268	(0.408,0.44]	chr20	743121	4	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	TPD52L2	ENSG00000101150.18	ENST00000611972.4:ENST00000615907.4:ENST00000369927.8:ENST00000346249.9:ENST00000348257.9:ENST00000352482.8:ENST00000351424.8:ENST00000217121.9:ENST00000358548.4:ENST00000474176.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	48	2	2.55103	3.688165	4.8253	0.00587353	0.0056738	0.0690758	0.0653997
chr6	17676667	17676766	3065910	0	-	0.424242	(0.408,0.44]	chr6	284866	5	INTRON	INTRON	NUP153	ENSG00000124789.12	ENST00000613258.4:ENST00000537253.5:ENST00000262077.3	protein_coding	protein_coding	protein_coding	protein_coding	2	48	2	2.55103	3.688165	4.8253	0.00587353	0.0056738	0.0690758	0.0653997
chr19	14707993	14708076	7025509	0	+	0.421687	(0.408,0.44]	chr19	699086	1	EXON_MRNA	EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ZNF333	ENSG00000160961.12	ENST00000292530.11:ENST00000597007.5:ENST00000540689.6:ENST00000601134.5:ENST00000597301.5:ENST00000598161.1:ENST00000594592.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	57	2	1.9831	3.6881500000000003	5.3932	0.018491	7.81492e-4	0.116694	0.0257168
chr9	123243360	123243459	4340229	0	-	0.353535	(0.35,0.378]	chr9	398963	60	INTRON	INTRON	STRBP	ENSG00000165209.19	ENST00000348403.10:ENST00000360998.3:ENST00000407982.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	60	2	1.92704	3.688115	5.44919	0.0228255	9.66659e-4	0.125469	0.0282401
chr19	1799452	1799551	7113315	0	-	0.575758	(0.57,1]	chr19	714742	8	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	ATP8B3	ENSG00000130270.16	ENST00000310127.10:ENST00000531925.5:ENST00000525591.5:ENST00000526092.6:ENST00000533107.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	151	2	3.65081	3.6880249999999997	3.72524	1.97193e-7	1.83021e-8	2.22283e-4	4.93816e-5
chr10	35335527	35335627	4601751	0	-	0.49	(0.476,0.515]	chr10	423936	2	SS5_PROX	SS5_PROX:INTRON	CCNY-AS1	ENSG00000271335.6	ENST00000659251.1:ENST00000605499.1	lncRNA	lncRNA	lncRNA	lncRNA	3	57	2	1.96833	3.68801	5.40769	0.0195007	6.23078e-4	0.119967	0.0229151
chr3	158658150	158658240	1543182	0	+	0.411111	(0.408,0.44]	chr3	160477	8	INTRON	INTRON	GFM1	ENSG00000168827.15	ENST00000486715.6:ENST00000478254.5:ENST00000478576.5:ENST00000264263.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	37	2	2.2957	3.687765	5.07983	0.0516458	0.00247652	0.176696	0.0446195
chr1	180644367	180644467	269719	0	+	0.26	[0,0.28]	chr1	31614	117	INTRON	INTRON	XPR1	ENSG00000143324.14	ENST00000367590.9:ENST00000367589.3	protein_coding	protein_coding	protein_coding	protein_coding	1	45	2	2.90797	3.687615	4.46726	0.0427997	0.0118539	0.148082	0.0962115
chr4	17840209	17840309	1927363	0	+	0.28	[0,0.28]	chr4	193796	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NCAPG	ENSG00000109805.10	ENST00000251496.7:ENST00000514176.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	45	2	2.90797	3.687615	4.46726	0.0427997	0.0118539	0.148082	0.0962115
chr6	158633756	158633855	3022351	0	+	0.232323	[0,0.28]	chr6	281883	20	UTR3	UTR3:EXON_MRNA	TMEM181	ENSG00000146433.10	ENST00000367090.4:ENST00000684151.1	protein_coding	protein_coding	protein_coding	protein_coding	1	45	2	2.90797	3.687615	4.46726	0.0427997	0.0118539	0.148082	0.0962115
chr7	91974765	91974865	3351355	0	+	0.21	[0,0.28]	chr7	312192	4	INTRON	INTRON	AKAP9	ENSG00000127914.19	ENST00000680534.1:ENST00000680513.1:ENST00000680072.1:ENST00000679821.1:ENST00000679554.1:ENST00000356239.8:ENST00000679521.1:ENST00000680181.1:ENST00000681722.1:ENST00000680766.1:ENST00000679448.1:ENST00000681412.1:ENST00000680047.1:ENST00000679474.1:ENST00000680952.1:ENST00000679457.1:ENST00000679722.1:ENST00000680074.1:ENST00000493453.1:ENST00000394564.5:ENST00000674381.2:ENST00000359028.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	45	2	2.90797	3.687615	4.46726	0.0427997	0.0118539	0.148082	0.0962115
chr7	99101882	99101981	3582721	0	-	0.393939	(0.378,0.408]	chr7	333700	206	INTRON	INTRON	SMURF1	ENSG00000198742.10	ENST00000361368.7:ENST00000361125.1:ENST00000472627.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	36	2	2.71183	3.687605	4.66338	0.0170789	0.0103469	0.110899	0.0850389
chr12	132647242	132647341	5448739	0	-	0.424242	(0.408,0.44]	chr12	521729	29	INTRON	INTRON	POLE	ENSG00000177084.18	ENST00000320574.10:ENST00000672742.1:ENST00000672002.1:ENST00000537064.5:ENST00000535270.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	79	2	1.54151	3.687575	5.83364	0.0368312	2.74563e-5	0.138959	0.00414215
chr12	62312907	62313006	5150080	0	+	0.252525	[0,0.28]	chr12	487313	2	INTRON	INTRON	USP15	ENSG00000135655.16	ENST00000353364.7:ENST00000549523.5:ENST00000550632.5:ENST00000312635.10:ENST00000548524.5:ENST00000280377.10:ENST00000549237.5:ENST00000548836.1:ENST00000546694.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	73	2	2.16436	3.68745	5.21054	0.0120935	0.00758653	0.0962599	0.0749063
chr15	58828588	58828687	6037316	0	+	0.585859	(0.57,1]	chr15	574937	64	INTRON	INTRON	MINDY2	ENSG00000128923.11	ENST00000316848.9:ENST00000560289.5:ENST00000559228.6:ENST00000450403.3:ENST00000559745.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	37	2	2.32017	3.68733	5.05449	0.00488159	1.79828e-4	0.0640618	0.0121697
chr3	57893673	57893772	1437027	0	+	0.323232	(0.32,0.35]	chr3	151751	26	INTRON	INTRON	SLMAP	ENSG00000163681.16	ENST00000295951.7:ENST00000659926.1:ENST00000659705.1:ENST00000671191.1:ENST00000667800.1:ENST00000428312.6:ENST00000664084.1:ENST00000657480.1:ENST00000295952.7:ENST00000383718.7:ENST00000449503.6:ENST00000417128.6:ENST00000465203.5:ENST00000475055.1:ENST00000670768.1:ENST00000416658.5:ENST00000472546.5:ENST00000459654.5:ENST00000494088.6:ENST00000662629.1:ENST00000438794.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	52	2	2.13945	3.687325	5.2352	0.0254517	0.0028268	0.133676	0.0472361
chr10	11992098	11992197	4557269	0	-	0.40404	(0.378,0.408]	chr10	420588	126	INTRON	INTRON	UPF2	ENSG00000151461.20	ENST00000357604.10:ENST00000356352.6:ENST00000397053.6	protein_coding	protein_coding	protein_coding	protein_coding	1	39	2	2.38873	3.6873	4.98587	0.0458857	0.00152268	0.149888	0.0360297
chr12	118338732	118338832	5429949	0	-	0.4	(0.378,0.408]	chr12	518768	412	INTRON	INTRON	TAOK3	ENSG00000135090.14	ENST00000392533.8:ENST00000419821.6:ENST00000541186.5:ENST00000541878.5:ENST00000542902.5:ENST00000542532.5:ENST00000541786.5:ENST00000539872.5:ENST00000542692.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	39	2	2.38873	3.6873	4.98587	0.0458857	0.00152268	0.149888	0.0360297
chr13	95221149	95221249	5639069	0	-	0.38	(0.378,0.408]	chr13	537151	100	INTRON	INTRON	ABCC4	ENSG00000125257.16	ENST00000645237.2:ENST00000643051.1:ENST00000643842.1:ENST00000646439.1:ENST00000643816.1:ENST00000536256.3:ENST00000643556.1:ENST00000629385.1:ENST00000642524.1:ENST00000645532.1:ENST00000644471.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	39	2	2.38873	3.6873	4.98587	0.0458857	0.00152268	0.149888	0.0360297
chr13	97262931	97263031	5518804	0	+	0.38	(0.378,0.408]	chr13	527710	400	INTRON	INTRON	MBNL2	ENSG00000139793.20	ENST00000397601.5:ENST00000343600.9:ENST00000376673.8:ENST00000679496.1:ENST00000685165.1:ENST00000345429.10:ENST00000469707.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	39	2	2.38873	3.6873	4.98587	0.0458857	0.00152268	0.149888	0.0360297
chr8	102288666	102288766	4011473	0	-	0.38	(0.378,0.408]	chr8	367072	4	SS3_PROX	SS3_PROX:INTRON	UBR5	ENSG00000104517.13	ENST00000520539.6:ENST00000220959.8:ENST00000521922.5:ENST00000519528.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	39	2	2.38873	3.6873	4.98587	0.0458857	0.00152268	0.149888	0.0360297
chr6	75640383	75640483	2905337	0	+	0.26	[0,0.28]	chr6	274514	3	SS3_PROX	SS3_PROX:INTRON	SENP6	ENSG00000112701.18	ENST00000370010.6:ENST00000447266.7:ENST00000327284.12:ENST00000483859.6:ENST00000424947.6	protein_coding	protein_coding	protein_coding	protein_coding	2	60	2	2.3719	3.687265	5.00263	0.0139689	0.013055	0.10247	0.093385
chr8	73813017	73813116	3971599	0	-	0.272727	[0,0.28]	chr8	364235	20	INTRON	INTRON	ENSG00000258677:UBE2W	ENSG00000258677.2:ENSG00000104343.21	ENST00000358757.5:ENST00000523278.5:ENST00000602593.6:ENST00000517608.5:ENST00000650817.1:ENST00000422906.6:ENST00000419880.7:ENST00000651945.1:ENST00000519277.5:ENST00000519255.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	60	2	2.3719	3.687265	5.00263	0.0139689	0.013055	0.10247	0.093385
chr12	56644280	56644369	5335798	0	-	0.494382	(0.476,0.515]	chr12	510138	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ATP5F1B	ENSG00000110955.9	ENST00000262030.8:ENST00000548474.2:ENST00000547808.5:ENST00000551020.5:ENST00000552959.5:ENST00000553007.2:ENST00000548647.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	39	2	2.9435	3.687215	4.43093	0.00931369	0.00929849	0.0855292	0.0817766
chr12	93774003	93774102	5190868	0	+	0.494949	(0.476,0.515]	chr12	490921	355	INTRON	INTRON	CRADD	ENSG00000169372.13	ENST00000332896.8:ENST00000549615.5:ENST00000551065.5:ENST00000548483.5:ENST00000542893.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	39	2	2.9435	3.687215	4.43093	0.00931369	0.00929849	0.0855292	0.0817766
chr1	8414132	8414232	369722	0	-	0.52	(0.515,0.57]	chr1	43438	478	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000377464.5:ENST00000400907.6:ENST00000476556.5:ENST00000656437.1:ENST00000488215.5:ENST00000460659.5:ENST00000492766.5:ENST00000465125.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	34	2	2.52504	3.6872	4.84936	0.029342	0.00146032	0.128055	0.0349875
chr19	46783140	46783231	7195367	0	-	0.516484	(0.515,0.57]	chr19	728992	2	INTRON	INTRON	SLC1A5	ENSG00000105281.12	ENST00000542575.6:ENST00000594991.5:ENST00000434726.6:ENST00000412532.6:ENST00000593713.1:ENST00000598022.1	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	2.52504	3.6872	4.84936	0.029342	0.00146032	0.128055	0.0349875
chr20	32225476	32225575	7255088	0	+	0.525253	(0.515,0.57]	chr20	736963	77	INTRON	INTRON	POFUT1	ENSG00000101346.14	ENST00000375749.8:ENST00000486717.5:ENST00000465791.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	34	2	2.52504	3.6872	4.84936	0.029342	0.00146032	0.128055	0.0349875
chr1	100047216	100047315	171695	0	+	0.262626	[0,0.28]	chr1	18596	36	INTRON	INTRON	ENSG00000283761:MFSD14A	ENSG00000283761.1:ENSG00000156875.14	ENST00000638792.1:ENST00000638968.1:ENST00000639040.1:ENST00000639037.1:ENST00000638779.1:ENST00000639171.1:ENST00000640238.1:ENST00000640357.1:ENST00000370152.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	61	2	2.48813	3.68719	4.88625	0.0173315	0.00953591	0.104099	0.0863913
chr8	115657977	115658076	4031557	0	-	0.383838	(0.378,0.408]	chr8	367988	203	INTRON	INTRON	TRPS1	ENSG00000104447.13	ENST00000395715.8:ENST00000640765.1:ENST00000220888.9:ENST00000520276.5:ENST00000519674.1:ENST00000517323.2:ENST00000395713.6:ENST00000519815.5:ENST00000422939.1:ENST00000451156.1	protein_coding	protein_coding	protein_coding	protein_coding	3	58	2	1.99678	3.687085	5.37739	0.0177959	0.0010014	0.113452	0.0288906
chr1	101022946	101023044	517250	0	-	0.489796	(0.476,0.515]	chr1	60672	13	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:INTRON	DPH5	ENSG00000117543.22	ENST00000370109.8:ENST00000370105.7:ENST00000427040.3:ENST00000690716.1:ENST00000488789.5:ENST00000481871.5:ENST00000464270.5:ENST00000342173.11:ENST00000466807.5:ENST00000477293.5:ENST00000498372.5:ENST00000488176.1:ENST00000490732.5:ENST00000476507.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	79	2	3.53895	3.68703	3.83511	0.00075485700000000005	2.63754e-4	0.0251966	0.0149561
chr4	128274451	128274550	2238637	0	-	0.393939	(0.378,0.408]	chr4	219132	15	INTRON	INTRON	PGRMC2	ENSG00000164040.18	ENST00000613358.4:ENST00000520121.6:ENST00000296425.10:ENST00000512483.5:ENST00000503872.1:ENST00000503588.1:ENST00000509070.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	39	2	2.60296	3.687005	4.77105	0.0267851	0.00330823	0.123349	0.0527031
chr10	132331160	132331247	4717161	0	-	0.402299	(0.378,0.408]	chr10	435311	3	SS5_PROX	SS5_PROX:INTRON	STK32C	ENSG00000165752.17	ENST00000368620.2:ENST00000368619.3:ENST00000456004.1	protein_coding	protein_coding	protein_coding	protein_coding	2	49	2	2.56408	3.6868800000000004	4.80968	0.00679828	0.00566993	0.0711802	0.0678837
chr1	21146586	21146686	393327	0	-	0.47	(0.44,0.476]	chr1	46836	336	INTRON	INTRON	EIF4G3	ENSG00000075151.24	ENST00000374935.7:ENST00000602326.6:ENST00000685872.1:ENST00000686579.1:ENST00000688741.1:ENST00000400422.6:ENST00000634879.2:ENST00000693470.1:ENST00000685814.1:ENST00000356916.7:ENST00000682284.1:ENST00000438975.5:ENST00000411888.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	53	2	2.51554	3.6868550000000004	4.85817	0.00777207	0.00223254	0.0757731	0.0435144
chr11	598902	599002	4719804	0	+	0.44	(0.408,0.44]	chr11	436203	4	SS5_PROX	SS5_PROX:INTRON	PHRF1	ENSG00000070047.13	ENST00000264555.10:ENST00000416188.3:ENST00000534320.5:ENST00000413872.6:ENST00000533464.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	38	2	2.51492	3.68682	4.85872	0.0329839	0.00221911	0.133816	0.0435144
chr6	90551748	90551848	3162436	0	-	0.41	(0.408,0.44]	chr6	294945	13	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	MAP3K7	ENSG00000135341.18	ENST00000369332.7:ENST00000369327.7:ENST00000369325.7:ENST00000369329.8:ENST00000369320.1	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	2.51492	3.68682	4.85872	0.0329839	0.00221911	0.133816	0.0435144
chr3	155830303	155830403	1844103	0	-	0.43	(0.408,0.44]	chr3	185540	4	SS3_PROX	SS3_PROX:INTRON	SLC33A1	ENSG00000169359.16	ENST00000643144.2:ENST00000359479.7:ENST00000468581.2:ENST00000646424.1:ENST00000644094.1:ENST00000642438.1:ENST00000644855.1:ENST00000475842.5:ENST00000496772.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	39	2	2.18807	3.6867150000000004	5.18536	0.0708044	6.17381e-4	0.184528	0.0223951
chr4	141221608	141221693	2053520	0	+	0.317647	(0.28,0.32]	chr4	203590	1	INTRON	INTRON	ZNF330	ENSG00000109445.11	ENST00000514826.5:ENST00000262990.9:ENST00000507532.5:ENST00000512809.5:ENST00000515453.5:ENST00000512738.5:ENST00000503649.5:ENST00000506302.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	71	2	2.50602	3.6866649999999996	4.86731	0.0116253	0.00290205	0.0889104	0.0494641
chr1	19202015	19202115	386760	0	-	0.51	(0.476,0.515]	chr1	46142	2	SS3_PROX	SS3_PROX:INTRON	UBR4	ENSG00000127481.15	ENST00000375254.8	protein_coding	protein_coding	protein_coding	protein_coding	5	167	2	3.15993	3.6865900000000003	4.21325	1.20366e-4	6.07314e-7	0.00992311	4.21822e-4
chr1	19470205	19470305	388756	0	-	0.38	(0.378,0.408]	chr1	46394	205	INTRON	INTRON	CAPZB	ENSG00000077549.19	ENST00000264202.8:ENST00000264203.7:ENST00000375142.5:ENST00000482808.2:ENST00000674449.1:ENST00000674390.1:ENST00000375144.6:ENST00000674432.1:ENST00000433834.5:ENST00000459967.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	108	2	3.33592	3.68645	4.03698	1.591e-4	1.18327e-4	0.0108481	0.00985867
chr10	96139769	96139869	4502294	0	+	0.37	(0.35,0.378]	chr10	414481	41	INTRON	INTRON	ZNF518A	ENSG00000177853.15	ENST00000614149.2:ENST00000488700.5:ENST00000624776.4:ENST00000539666.5:ENST00000563195.1:ENST00000316045.10	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	85	2	3.37175	3.6863599999999996	4.00097	0.00236696	8.64759e-5	0.043778	0.00783027
chr9	111904309	111904409	4184526	0	+	0.46	(0.44,0.476]	chr9	381684	66	INTRON	INTRON	UGCG	ENSG00000148154.10	ENST00000374279.4:ENST00000489355.1:ENST00000495085.1:ENST00000490110.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	39	2	3.36231	3.6863449999999998	4.01038	0.0433743	0.00161678	0.148082	0.0369204
chr15	52558635	52558734	6177212	0	-	0.292929	(0.28,0.32]	chr15	588892	10	INTRON	INTRON	ARPP19	ENSG00000128989.11	ENST00000566423.5:ENST00000249822.9:ENST00000561650.5:ENST00000563277.5:ENST00000567669.5:ENST00000569723.5:ENST00000569281.6:ENST00000564163.5:ENST00000563566.5:ENST00000561971.1:ENST00000567830.1	protein_coding	protein_coding	protein_coding	protein_coding	2	55	2	2.38391	3.686315	4.98872	0.0122525	0.00838468	0.0969406	0.0774402
chr16	58520041	58520133	6495211	0	-	0.380435	(0.378,0.408]	chr16	628373	2	UTR3	UTR3:EXON_MRNA	CNOT1	ENSG00000125107.19	ENST00000317147.10	protein_coding	protein_coding	protein_coding	protein_coding	2	49	2	2.04292	3.6863	5.32968	0.0326035	0.00119786	0.145164	0.0315806
chr8	1782436	1782535	3691172	0	+	0.383838	(0.378,0.408]	chr8	342602	20	UTR3	UTR3:EXON_MRNA:INTRON	CLN8	ENSG00000182372.10	ENST00000331222.6:ENST00000636934.1:ENST00000635970.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	49	2	2.04292	3.6863	5.32968	0.0326035	0.00119786	0.145164	0.0315806
chr14	103452780	103452879	5826315	0	+	0.40404	(0.378,0.408]	chr14	552855	4	INTRON	INTRON	MARK3	ENSG00000075413.19	ENST00000678179.1:ENST00000676838.1:ENST00000677348.1:ENST00000677404.1:ENST00000676694.1:ENST00000676938.1:ENST00000678619.1:ENST00000676897.1:ENST00000677214.1:ENST00000677942.1:ENST00000676830.1:ENST00000678999.1:ENST00000677228.1:ENST00000556744.2:ENST00000677104.1:ENST00000679330.1:ENST00000560417.6:ENST00000440884.7:ENST00000676475.1:ENST00000677035.1:ENST00000678022.1:ENST00000677560.1:ENST00000561314.6:ENST00000429436.7:ENST00000677118.1:ENST00000676564.1:ENST00000678169.1:ENST00000678175.1:ENST00000678897.1:ENST00000678278.1:ENST00000676645.1:ENST00000677829.1:ENST00000678302.1:ENST00000677133.1:ENST00000561164.2:ENST00000558223.6:ENST00000559328.6:ENST00000678207.1:ENST00000677360.1:ENST00000676905.1:ENST00000678343.1:ENST00000677347.1:ENST00000678071.1:ENST00000677432.1:ENST00000678237.1:ENST00000677604.1:ENST00000676518.1:ENST00000677051.1:ENST00000677857.1:ENST00000677869.1:ENST00000678423.1:ENST00000560603.6:ENST00000416682.6:ENST00000303622.13:ENST00000216288.11:ENST00000679105.1:ENST00000553942.5:ENST00000335102.9:ENST00000678091.1:ENST00000561071.5:ENST00000558698.5:ENST00000559268.5:ENST00000560731.5:ENST00000676745.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	164	2	2.8946	3.6862700000000004	4.47794	5.44175e-5	1.15421e-5	0.00603408	0.00268546
chr7	43716743	43716842	3526251	0	-	0.59596	(0.57,1]	chr7	328785	49	INTRON	INTRON	COA1	ENSG00000106603.20	ENST00000415076.6:ENST00000446330.6:ENST00000446564.5:ENST00000438444.5:ENST00000223336.11:ENST00000310564.10:ENST00000415798.5:ENST00000431651.5:ENST00000451651.5:ENST00000418140.5:ENST00000448704.5:ENST00000470156.1:ENST00000457939.1:ENST00000420441.1:ENST00000478504.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	32	2	2.17026	3.6862049999999997	5.20215	0.0220522	8.28896e-5	0.123836	0.00812487
chr8	123381475	123381574	4042493	0	-	0.343434	(0.32,0.35]	chr8	368789	4	INTRON	INTRON	ATAD2	ENSG00000156802.13	ENST00000287394.10:ENST00000517666.5:ENST00000521903.5:ENST00000519124.5:ENST00000521496.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	90	2	3.4862	3.68615	3.8861	0.001711	1.80108e-4	0.037419	0.0116696
chr1	230118628	230118728	334593	0	+	0.61	(0.57,1]	chr1	38930	267	INTRON	INTRON	GALNT2	ENSG00000143641.10	ENST00000494106.1:ENST00000366672.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	24	2	2.66801	3.68614	4.70427	0.0169968	9.25341e-4	0.110899	0.0278396
chr16	85496790	85496890	6414798	0	+	0.65	(0.57,1]	chr16	615465	1375	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	1	24	2	2.66801	3.68614	4.70427	0.0169968	9.25341e-4	0.110899	0.0278396
chr2	10157458	10157558	691078	0	+	0.6	(0.57,1]	chr2	81109	13	INTRON	INTRON	RRM2	ENSG00000171848.16	ENST00000641498.1:ENST00000381786.7	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	1	24	2	2.66801	3.68614	4.70427	0.0169968	9.25341e-4	0.110899	0.0278396
chr7	129044404	129044504	3636476	0	-	0.3	(0.28,0.32]	chr7	338148	23	INTRON	INTRON	TNPO3	ENSG00000064419.14	ENST00000627585.2:ENST00000265388.10:ENST00000471234.5:ENST00000482320.5:ENST00000471166.1	protein_coding	protein_coding	protein_coding	protein_coding	5	84	2	1.52982	3.6861	5.84238	0.0379288	5.0114e-4	0.157212	0.0206993
chr10	35496918	35497018	4426114	0	+	0.34	(0.32,0.35]	chr10	407925	131	INTRON	INTRON	CCNY	ENSG00000108100.18	ENST00000374706.5:ENST00000490012.6:ENST00000493157.6:ENST00000374704.8:ENST00000265375.13:ENST00000339497.7:ENST00000492478.5:ENST00000470025.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	63	2	2.18777	3.6859599999999997	5.18415	0.00951422	0.00333629	0.0863913	0.0512081
chr14	54429665	54429760	5897779	0	-	0.557895	(0.515,0.57]	chr14	560113	15	INTRON	INTRON	CNIH1	ENSG00000100528.12	ENST00000216416.9:ENST00000395573.8:ENST00000557659.5:ENST00000553660.5:ENST00000557690.5:ENST00000554683.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	33	2	3.05839	3.685825	4.31326	0.0141817	0.00485936	0.0959618	0.0640618
chr16	30292898	30292998	6472939	0	-	0.41	(0.408,0.44]	chr16	625670	4	SS5_PROX	SS5_PROX:INTRON	SMG1P5	ENSG00000183604.15	ENST00000529428.5:ENST00000411546.4:ENST00000691460.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	1	39	2	2.84077	3.685825	4.53088	0.0132196	0.00669275	0.0940535	0.0738715
chr16	81481074	81481174	6405360	0	+	0.41	(0.408,0.44]	chr16	615026	352	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8	protein_coding	protein_coding	protein_coding	protein_coding	1	39	2	2.84077	3.685825	4.53088	0.0132196	0.00669275	0.0940535	0.0738715
chr17	675680	675780	6698173	0	-	0.52	(0.515,0.57]	chr17	655351	9	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	VPS53	ENSG00000141252.21	ENST00000437048.7:ENST00000681160.1:ENST00000680465.1:ENST00000681661.1:ENST00000680872.1:ENST00000681317.1:ENST00000681510.1:ENST00000680641.1:ENST00000681946.1:ENST00000576149.5:ENST00000681917.1:ENST00000681096.1:ENST00000573028.5:ENST00000571805.6:ENST00000681478.1:ENST00000680128.1:ENST00000291074.10:ENST00000389040.9:ENST00000401468.7:ENST00000680704.1:ENST00000572334.7:ENST00000680069.1:ENST00000681902.1:ENST00000679361.1:ENST00000681154.1:ENST00000680958.1:ENST00000680274.1:ENST00000681229.1:ENST00000681035.1:ENST00000681133.1:ENST00000679680.1:ENST00000576019.6:ENST00000679961.1:ENST00000681120.1:ENST00000575207.6:ENST00000680660.1:ENST00000680970.1:ENST00000680241.1:ENST00000681423.1:ENST00000572259.2:ENST00000575100.2:ENST00000681295.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	33	2	3.05839	3.685825	4.31326	0.0141817	0.00485936	0.0959618	0.0640618
chr3	119458740	119458837	1791937	0	-	0.525773	(0.515,0.57]	chr3	179955	1	INTRON	INTRON	TMEM39A	ENSG00000176142.13	ENST00000319172.10:ENST00000438581.6:ENST00000491685.5:ENST00000486159.5:ENST00000486235.5:ENST00000468676.5:ENST00000490099.5:ENST00000497993.5:ENST00000482162.1:ENST00000461654.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	33	2	3.05839	3.685825	4.31326	0.0141817	0.00485936	0.0959618	0.0640618
chr4	26363524	26363623	1937102	0	+	0.535354	(0.515,0.57]	chr4	194373	5	INTRON	INTRON	RBPJ	ENSG00000168214.22	ENST00000512351.5:ENST00000681799.1:ENST00000681403.1:ENST00000342295.6:ENST00000512671.6:ENST00000506956.5:ENST00000345843.8:ENST00000361572.10:ENST00000514380.5:ENST00000514807.5:ENST00000348160.9:ENST00000681506.1:ENST00000509158.6:ENST00000691085.1:ENST00000692303.1:ENST00000681856.1:ENST00000513182.5:ENST00000681025.1:ENST00000681679.1:ENST00000680210.1:ENST00000355476.8:ENST00000680140.1:ENST00000511401.5:ENST00000680511.1:ENST00000510778.7:ENST00000679698.1:ENST00000679469.1:ENST00000681484.1:ENST00000505958.6:ENST00000507561.5:ENST00000514730.5:ENST00000507574.5:ENST00000514675.5:ENST00000515573.5:ENST00000689192.1:ENST00000680928.1:ENST00000681260.1:ENST00000681093.1:ENST00000504423.2:ENST00000511546.5:ENST00000342320.8:ENST00000504907.5:ENST00000514656.3:ENST00000511451.5:ENST00000681264.1:ENST00000504938.1:ENST00000680204.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	33	2	3.05839	3.685825	4.31326	0.0141817	0.00485936	0.0959618	0.0640618
chr6	43772501	43772601	2872083	0	+	0.52	(0.515,0.57]	chr6	272349	4	SS5_PROX	SS5_PROX:INTRON	VEGFA	ENSG00000112715.26	ENST00000476772.5:ENST00000672860.3:ENST00000372067.8:ENST00000425836.8:ENST00000372064.9:ENST00000482630.7:ENST00000372055.9:ENST00000413642.8:ENST00000324450.11:ENST00000417285.7:ENST00000372077.8:ENST00000519767.5:ENST00000520948.5:ENST00000518538.5:ENST00000523950.5:ENST00000523873.5:ENST00000518824.5:ENST00000457104.6:ENST00000518689.5:ENST00000523125.5:ENST00000512683.1:ENST00000230480.10	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	33	2	3.05839	3.685825	4.31326	0.0141817	0.00485936	0.0959618	0.0640618
chr6	107951886	107951986	3182784	0	-	0.54	(0.515,0.57]	chr6	296463	220	INTRON	INTRON	SEC63	ENSG00000025796.14	ENST00000369002.9:ENST00000429168.1:ENST00000484803.5:ENST00000446496.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	33	2	3.05839	3.685825	4.31326	0.0141817	0.00485936	0.0959618	0.0640618
chr12	93425687	93425787	5388076	0	-	0.4	(0.378,0.408]	chr12	513727	9	INTRON	INTRON	UBE2N	ENSG00000177889.10	ENST00000318066.7:ENST00000550657.1:ENST00000549833.1:ENST00000549490.1:ENST00000552442.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	36	2	2.78705	3.68566	4.58427	0.0135539	0.0128325	0.101363	0.0926667
chr16	11705547	11705646	6444822	0	-	0.383838	(0.378,0.408]	chr16	620808	14	INTRON	INTRON	TXNDC11	ENSG00000153066.13	ENST00000283033.10:ENST00000356957.7:ENST00000575591.1:ENST00000576969.5:ENST00000571882.1:ENST00000573174.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	36	2	2.78705	3.68566	4.58427	0.0135539	0.0128325	0.101363	0.0926667
chr2	27682459	27682559	718809	0	+	0.38	(0.378,0.408]	chr2	83560	1	SS5_PROX	SS5_PROX:INTRON	SLC4A1AP	ENSG00000163798.14	ENST00000696012.1:ENST00000696011.1:ENST00000613517.5:ENST00000696014.1:ENST00000618046.4:ENST00000326019.11:ENST00000696013.1:ENST00000696015.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	36	2	2.78705	3.68566	4.58427	0.0135539	0.0128325	0.101363	0.0926667
chr7	135974728	135974828	3649446	0	-	0.38	(0.378,0.408]	chr7	339214	227	INTRON	INTRON	MTPN	ENSG00000105887.11	ENST00000393085.4:ENST00000435723.1	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	2.78705	3.68566	4.58427	0.0135539	0.0128325	0.101363	0.0926667
chr4	26431497	26431596	1937812	0	+	0.363636	(0.35,0.378]	chr4	194470	6	UTR3	UTR3:EXON_MRNA	RBPJ	ENSG00000168214.22	ENST00000355476.8:ENST00000342320.8	protein_coding	protein_coding	protein_coding	protein_coding	4	152	2	3.58322	3.685635	3.78805	8.40534e-5	1.28193e-5	0.00818776	0.00266147
chr1	27472998	27473098	406593	0	-	0.31	(0.28,0.32]	chr1	48986	437	INTRON	INTRON	WASF2	ENSG00000158195.11	ENST00000618852.5:ENST00000536657.1	protein_coding	protein_coding	protein_coding	protein_coding	1	41	2	2.86113	3.68547	4.50981	0.0275554	0.0122675	0.123904	0.0969406
chr17	67185423	67185523	6825218	0	-	0.3	(0.28,0.32]	chr17	674490	53	INTRON	INTRON	HELZ	ENSG00000198265.12	ENST00000358691.10:ENST00000579953.5:ENST00000580168.5:ENST00000417253.7:ENST00000578783.1:ENST00000578938.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:nonsense_mediated_decay:processed_transcript	1	41	2	2.86113	3.68547	4.50981	0.0275554	0.0122675	0.123904	0.0969406
chr18	13026574	13026673	6876931	0	+	0.40404	(0.378,0.408]	chr18	681391	70	INTRON	INTRON	CEP192	ENSG00000101639.19	ENST00000325971.12:ENST00000506447.5:ENST00000589596.5:ENST00000513432.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	37	2	3.05393	3.68546	4.31699	0.0250408	0.00551532	0.12011	0.0672816
chr4	127922182	127922282	2238117	0	-	0.4	(0.378,0.408]	chr4	219045	2	SS3_PROX	SS3_PROX:INTRON	MFSD8	ENSG00000164073.11	ENST00000296468.8:ENST00000641686.2:ENST00000641186.1:ENST00000641774.1:ENST00000641748.1:ENST00000641508.1:ENST00000641690.1:ENST00000641928.1:ENST00000641464.1:ENST00000641092.1:ENST00000641397.1:ENST00000641393.1:ENST00000641025.1:ENST00000641509.1:ENST00000642034.1:ENST00000641178.1:ENST00000641147.1:ENST00000641753.1:ENST00000641434.1:ENST00000641482.1:ENST00000641133.1:ENST00000641146.1:ENST00000641413.1:ENST00000641869.1:ENST00000515130.6:ENST00000641332.1:ENST00000641870.1:ENST00000641949.1:ENST00000641228.1:ENST00000641590.1:ENST00000641843.1:ENST00000642078.1:ENST00000641882.1:ENST00000641742.1:ENST00000641658.1:ENST00000513559.6:ENST00000642012.1:ENST00000509826.2:ENST00000642042.1:ENST00000641340.1:ENST00000641388.1:ENST00000641830.1:ENST00000641538.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	37	2	3.05393	3.68546	4.31699	0.0250408	0.00551532	0.12011	0.0672816
chr5	138363879	138363979	2494963	0	+	0.38	(0.378,0.408]	chr5	238471	105	INTRON	INTRON	KDM3B	ENSG00000120733.14	ENST00000314358.10	protein_coding	protein_coding	protein_coding	protein_coding	1	37	2	3.05393	3.68546	4.31699	0.0250408	0.00551532	0.12011	0.0672816
chr7	66730504	66730604	3325373	0	+	0.39	(0.378,0.408]	chr7	309227	179	INTRON	INTRON	RABGEF1	ENSG00000154710.18	ENST00000607882.5	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	1	37	2	3.05393	3.68546	4.31699	0.0250408	0.00551532	0.12011	0.0672816
chr1	93172577	93172676	508480	0	-	0.393939	(0.378,0.408]	chr1	59928	95	INTRON	INTRON	TMED5	ENSG00000117500.13	ENST00000370282.8:ENST00000370290.7:ENST00000479918.5:ENST00000370280.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	36	2	2.63247	3.68543	4.73839	0.0215745	0.00837252	0.123836	0.0774402
chr10	74273404	74273504	4456993	0	+	0.4	(0.378,0.408]	chr10	411553	300	INTRON	INTRON	ADK	ENSG00000156110.15	ENST00000672429.1:ENST00000539909.6:ENST00000286621.7:ENST00000673352.1:ENST00000673310.1:ENST00000672920.1:ENST00000672394.1:ENST00000372734.5:ENST00000673027.1:ENST00000541550.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	36	2	2.63247	3.68543	4.73839	0.0215745	0.00837252	0.123836	0.0774402
chr8	90284684	90284784	3792940	0	+	0.4	(0.378,0.408]	chr8	351786	375	INTRON	INTRON	LINC00534	ENSG00000253394.7	ENST00000662145.1:ENST00000655523.1:ENST00000517400.6:ENST00000658299.1:ENST00000663329.1:ENST00000658342.1:ENST00000523283.6:ENST00000655219.1:ENST00000662692.1:ENST00000667296.1:ENST00000667565.1:ENST00000523406.2:ENST00000659030.1:ENST00000653734.1:ENST00000654785.1:ENST00000524361.5:ENST00000668745.1:ENST00000666641.2:ENST00000661519.1:ENST00000671657.1:ENST00000655123.1:ENST00000663098.1:ENST00000670903.1:ENST00000654946.1	lncRNA	lncRNA	lncRNA	lncRNA	1	36	2	2.63247	3.68543	4.73839	0.0215745	0.00837252	0.123836	0.0774402
chr9	123007555	123007655	4195762	0	+	0.4	(0.378,0.408]	chr9	382853	84	INTRON	INTRON	RABGAP1	ENSG00000011454.18	ENST00000456584.5:ENST00000373647.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	36	2	2.63247	3.68543	4.73839	0.0215745	0.00837252	0.123836	0.0774402
chr1	19137109	19137208	386021	0	-	0.535354	(0.515,0.57]	chr1	45834	77	INTRON	INTRON	UBR4	ENSG00000127481.15	ENST00000375254.8:ENST00000425413.5:ENST00000417040.1	protein_coding	protein_coding	protein_coding	protein_coding	2	43	2	2.39351	3.685365	4.97722	0.0100431	0.00168681	0.0881096	0.0370386
chr16	88591998	88592098	6418480	0	+	0.52	(0.515,0.57]	chr16	615804	40	INTRON	INTRON	ZC3H18	ENSG00000158545.16	ENST00000301011.10:ENST00000452588.6:ENST00000569435.5:ENST00000567085.1	protein_coding	protein_coding	protein_coding	protein_coding	2	43	2	2.39351	3.685365	4.97722	0.0100431	0.00168681	0.0881096	0.0370386
chr15	30655088	30655187	5992569	0	+	0.525253	(0.515,0.57]	chr15	569759	57	INTRON	INTRON	ENSG00000284906:ENSG00000285035	ENSG00000284906.3:ENSG00000285035.2	ENST00000685924.1:ENST00000563110.6:ENST00000642399.2:ENST00000566548.5	protein_coding	protein_coding	protein_coding:transcribed_unprocessed_pseudogene	protein_coding:nonsense_mediated_decay:processed_transcript:transcribed_unprocessed_pseudogene	2	43	2	2.32836	3.685305	5.04225	0.0126662	0.00131841	0.0982897	0.0331539
chr2	113245191	113245290	853145	0	+	0.525253	(0.515,0.57]	chr2	95735	39	INTRON	INTRON	PAX8-AS1	ENSG00000189223.15	ENST00000556070.6:ENST00000623306.3:ENST00000451179.6:ENST00000653055.1:ENST00000665814.1:ENST00000669027.1:ENST00000617509.4:ENST00000616073.5:ENST00000422956.6:ENST00000661674.1:ENST00000617278.2:ENST00000654203.1:ENST00000663248.1:ENST00000333145.9:ENST00000665717.1:ENST00000624706.3:ENST00000445745.6:ENST00000436293.6:ENST00000661255.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	2	43	2	2.32836	3.685305	5.04225	0.0126662	0.00131841	0.0982897	0.0331539
chr15	56979061	56979161	6032716	0	+	0.36	(0.35,0.378]	chr15	574663	576	INTRON	INTRON	TCF12	ENSG00000140262.18	ENST00000438423.6:ENST00000267811.9:ENST00000333725.10:ENST00000560190.5:ENST00000559609.5:ENST00000558908.5:ENST00000557843.5:ENST00000557947.5:ENST00000561152.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	50	2	2.44701	3.6852799999999997	4.92355	0.00900997	0.00573514	0.0851009	0.0657377
chr17	81625753	81625852	6849496	0	-	0.373737	(0.35,0.378]	chr17	678237	31	INTRON	INTRON	NPLOC4	ENSG00000182446.14	ENST00000331134.11:ENST00000374747.9:ENST00000574897.5:ENST00000625705.1:ENST00000570300.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	50	2	2.44701	3.6852799999999997	4.92355	0.00900997	0.00573514	0.0851009	0.0657377
chr7	128482626	128482726	3407131	0	+	0.5	(0.476,0.515]	chr7	318289	2	SS3_PROX	SS3_PROX:INTRON	ENSG00000273184:METTL2B	ENSG00000273184.1:ENSG00000165055.16	ENST00000462662.1:ENST00000482555.5:ENST00000262432.13:ENST00000497665.5:ENST00000480046.5:ENST00000473488.1:ENST00000419443.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA:processed_transcript	3	109	2	3.58809	3.685105	3.78212	2.36145e-4	5.83402e-5	0.0136195	0.00668534
chr19	10876113	10876213	7015013	0	+	0.52	(0.515,0.57]	chr19	697070	38	INTRON	INTRON	CARM1	ENSG00000142453.12	ENST00000327064.9:ENST00000588947.5:ENST00000590699.5:ENST00000344150.8:ENST00000586221.5:ENST00000590039.5:ENST00000589693.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	33	2	2.46104	3.68508	4.90912	0.032841	0.0021669	0.145164	0.0417866
chr1	31343842	31343942	61636	0	+	0.42	(0.408,0.44]	chr1	7853	44	INTRON	INTRON	ZCCHC17	ENSG00000121766.16	ENST00000618216.4:ENST00000546109.5:ENST00000616393.4:ENST00000616859.4:ENST00000615916.4:ENST00000479629.5:ENST00000373714.5:ENST00000344147.10:ENST00000627541.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	38	2	2.43988	3.68506	4.93024	0.0398236	0.00170369	0.143072	0.0381936
chr16	18912010	18912110	6457966	0	-	0.43	(0.408,0.44]	chr16	622895	4	INTRON	INTRON	SMG1	ENSG00000157106.18	ENST00000446231.7:ENST00000532700.6:ENST00000569122.1	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	2.43988	3.68506	4.93024	0.0398236	0.00170369	0.143072	0.0381936
chr8	55910867	55910967	3754645	0	+	0.43	(0.408,0.44]	chr8	349249	304	INTRON	INTRON	LYN	ENSG00000254087.8	ENST00000519728.6:ENST00000520220.6	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	2.43988	3.68506	4.93024	0.0398236	0.00170369	0.143072	0.0381936
chr2	69664833	69664933	1149847	0	-	0.59	(0.57,1]	chr2	122743	210	INTRON	INTRON	AAK1	ENSG00000115977.21	ENST00000461002.1	protein_coding	processed_transcript	protein_coding	processed_transcript	2	31	2	2.56996	3.685035	4.80011	0.00499145	6.07135e-4	0.0646039	0.0226059
chr12	121802597	121802690	5439501	0	-	0.311828	(0.28,0.32]	chr12	520142	12	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	RHOF:LINC01089	ENSG00000139725.8:ENSG00000212694.8	ENST00000541657.5:ENST00000545544.1:ENST00000429892.5:ENST00000542933.5:ENST00000428029.6:ENST00000541694.5:ENST00000535643.5:ENST00000543334.5:ENST00000536662.5:ENST00000545885.5:ENST00000538335.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA:processed_transcript	3	66	2	1.81152	3.6849849999999997	5.55845	0.034446	0.00141854	0.147767	0.0340865
chr3	184307256	184307356	1582253	0	+	0.41	(0.408,0.44]	chr3	163543	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PSMD2	ENSG00000175166.17	ENST00000310118.9:ENST00000439383.5:ENST00000435761.5:ENST00000432855.1:ENST00000496925.5:ENST00000473991.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	57	2	2.17784	3.6849300000000005	5.19202	0.00916282	0.0016671	0.0855292	0.0369207
chr14	26891953	26892053	5663268	0	+	0.28	[0,0.28]	chr14	540167	106	INTRON	INTRON	ENSG00000258081:MIR4307HG	ENSG00000258081.4:ENSG00000257612.2	ENST00000656336.1:ENST00000550024.1:ENST00000552303.1:ENST00000664825.1:ENST00000657233.1:ENST00000661570.1:ENST00000548170.2:ENST00000654842.1:ENST00000657558.1:ENST00000656237.1:ENST00000667739.1:ENST00000654874.1:ENST00000658815.1:ENST00000667676.1:ENST00000658149.1:ENST00000666037.1:ENST00000666377.1:ENST00000655440.1:ENST00000666571.1:ENST00000653927.1:ENST00000669484.1:ENST00000663099.1:ENST00000653481.1:ENST00000667699.1:ENST00000668735.1:ENST00000656692.1:ENST00000662028.1	lncRNA	lncRNA	lncRNA	lncRNA	1	44	2	2.74901	3.6849250000000002	4.62084	0.0313633	0.0188843	0.13151	0.118148
chr2	15530443	15530543	1072853	0	-	0.16	[0,0.28]	chr2	114441	187	INTRON	INTRON	NBAS	ENSG00000151779.13	ENST00000281513.10	protein_coding	protein_coding	protein_coding	protein_coding	1	44	2	2.74901	3.6849250000000002	4.62084	0.0313633	0.0188843	0.13151	0.118148
chr9	5708462	5708562	4098099	0	+	0.26	[0,0.28]	chr9	373384	181	INTRON	INTRON	RIC1	ENSG00000107036.12	ENST00000251879.10:ENST00000414202.7:ENST00000418622.7:ENST00000545641.5	protein_coding	protein_coding	protein_coding	protein_coding	1	44	2	2.74901	3.6849250000000002	4.62084	0.0313633	0.0188843	0.13151	0.118148
chrX	154746761	154746861	7915277	0	-	0.36	(0.35,0.378]	chrX	806107	301	INTRON	INTRON	GAB3	ENSG00000160219.12	ENST00000496390.5:ENST00000424127.3:ENST00000369575.7:ENST00000369568.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	50	2	2.10859	3.68492	5.26125	0.0272722	0.00191117	0.136494	0.03947
chr22	35179358	35179458	7580551	0	-	0.42	(0.408,0.44]	chr22	775768	65	INTRON	INTRON	LINC01399	ENSG00000233080.3	ENST00000423311.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	1	38	2	2.58624	3.68486	4.78348	0.0273686	0.00290352	0.123904	0.0494641
chr1	21853692	21853792	397257	0	-	0.36	(0.35,0.378]	chr1	47551	1	SS5_PROX	SS5_PROX:INTRON	HSPG2	ENSG00000142798.20	ENST00000374695.8:ENST00000493940.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	37	2	2.72498	3.684775	4.64457	0.0168499	0.012652	0.11068	0.0926667
chr15	44582615	44582715	6163920	0	-	0.36	(0.35,0.378]	chr15	587255	72	INTRON	INTRON	SPG11	ENSG00000104133.16	ENST00000684235.1:ENST00000261866.12:ENST00000559511.6:ENST00000682065.1:ENST00000682669.1:ENST00000683496.1:ENST00000682460.1:ENST00000682495.1:ENST00000684038.1:ENST00000683186.1:ENST00000683734.1:ENST00000683753.1:ENST00000535302.6:ENST00000427534.6:ENST00000561391.2:ENST00000558319.5:ENST00000684676.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	37	2	2.72498	3.684775	4.64457	0.0168499	0.012652	0.11068	0.0926667
chr6	155255936	155256034	3251124	0	-	0.581633	(0.57,1]	chr6	302085	18	EXON_LNCRNA	EXON_LNCRNA	ENSG00000235381	ENSG00000235381.1	ENST00000435295.1	lncRNA	lncRNA	lncRNA	lncRNA	3	39	2	2.49621	3.6847700000000003	4.87333	0.00209832	3.21412e-4	0.0413494	0.0159645
chr16	1359663	1359759	6274242	0	+	0.375	(0.35,0.378]	chr16	599252	14	INTRON	INTRON	GNPTG	ENSG00000090581.11	ENST00000204679.9:ENST00000526820.5:ENST00000683366.1:ENST00000527168.6:ENST00000683887.1:ENST00000529110.2:ENST00000684126.1:ENST00000529957.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	37	2	2.6498	3.684665	4.71953	0.0210137	0.0103314	0.122348	0.0850389
chr2	23830720	23830819	1079972	0	-	0.363636	(0.35,0.378]	chr2	115282	14	INTRON	INTRON	ATAD2B	ENSG00000119778.15	ENST00000238789.10:ENST00000474583.5:ENST00000458510.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	37	2	2.6498	3.684665	4.71953	0.0210137	0.0103314	0.122348	0.0850389
chr3	11816382	11816480	1615775	0	-	0.357143	(0.35,0.378]	chr3	166772	50	INTRON	INTRON	TAMM41	ENSG00000144559.11	ENST00000273037.9:ENST00000455809.6:ENST00000457498.5:ENST00000414736.1:ENST00000444133.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	37	2	2.6498	3.684665	4.71953	0.0210137	0.0103314	0.122348	0.0850389
chr6	157871905	157872005	3016251	0	+	0.37	(0.35,0.378]	chr6	281360	39	INTRON	INTRON	SNX9	ENSG00000130340.17	ENST00000614703.4:ENST00000614800.4:ENST00000680863.1:ENST00000679814.1:ENST00000680464.1:ENST00000681186.1:ENST00000679732.1:ENST00000681183.1:ENST00000681534.1:ENST00000681651.1:ENST00000680089.1:ENST00000680078.1:ENST00000680974.1:ENST00000680095.1:ENST00000680015.1:ENST00000681138.1:ENST00000392185.8:ENST00000679790.1:ENST00000680495.1:ENST00000679691.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	37	2	2.6498	3.684665	4.71953	0.0210137	0.0103314	0.122348	0.0850389
chr8	91029259	91029359	3988753	0	-	0.36	(0.35,0.378]	chr8	365301	45	INTRON	INTRON	PIP4P2	ENSG00000155099.8	ENST00000285419.8:ENST00000520709.5:ENST00000518359.5:ENST00000520014.1:ENST00000518869.1:ENST00000630164.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	37	2	2.6498	3.684665	4.71953	0.0210137	0.0103314	0.122348	0.0850389
chr6	42067527	42067624	2864845	0	+	0.391753	(0.378,0.408]	chr6	270977	12	EXON_MRNA	EXON_MRNA:INTRON	TAF8	ENSG00000137413.17	ENST00000686935.1:ENST00000372982.8:ENST00000456846.6:ENST00000494547.5:ENST00000372977.8:ENST00000688562.1:ENST00000686229.1:ENST00000691805.1:ENST00000687601.1:ENST00000688007.1:ENST00000689833.1:ENST00000687266.1:ENST00000465926.5:ENST00000685500.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	60	2	1.65821	3.68466	5.71111	0.0506302	2.59738e-4	0.17547	0.0148796
chr6	82209217	82209316	3143379	0	-	0.393939	(0.378,0.408]	chr6	293064	34	INTRON	INTRON	IBTK	ENSG00000005700.15	ENST00000505222.5:ENST00000306270.12:ENST00000610980.4:ENST00000503400.5:ENST00000503631.5:ENST00000510291.5:ENST00000369751.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	60	2	1.65821	3.68466	5.71111	0.0506302	2.59738e-4	0.17547	0.0148796
chr10	5415409	5415508	4383887	0	+	0.484848	(0.476,0.515]	chr10	404394	22	INTRON	INTRON	NET1	ENSG00000173848.19	ENST00000355029.9	protein_coding	protein_coding	protein_coding	protein_coding	3	58	2	2.3346	3.68463	5.03466	0.00494807	0.00252065	0.0646039	0.0446195
chr1	42669775	42669874	83869	0	+	0.272727	[0,0.28]	chr1	11005	7	INTRON	INTRON	PPIH	ENSG00000171960.12	ENST00000372550.6:ENST00000678038.1:ENST00000677900.1:ENST00000676675.1:ENST00000304979.8:ENST00000678193.1:ENST00000678333.1:ENST00000677307.1:ENST00000677356.1:ENST00000679245.1:ENST00000677312.1:ENST00000461351.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	50	2	2.73384	3.684535	4.63523	0.0246308	0.0139836	0.12011	0.10247
chr1	77681487	77681587	493453	0	-	0.27	[0,0.28]	chr1	58319	38	INTRON	INTRON	ZZZ3	ENSG00000036549.13	ENST00000370801.8:ENST00000370798.5:ENST00000433749.5:ENST00000414381.5:ENST00000463166.5:ENST00000469944.1:ENST00000458763.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	44	2	2.36637	3.6845	5.00263	0.0500615	0.013055	0.17488	0.093385
chr3	56561378	56561478	1434344	0	+	0.26	[0,0.28]	chr3	151401	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	CCDC66	ENSG00000180376.17	ENST00000422222.5:ENST00000460838.5:ENST00000439445.5:ENST00000394672.8:ENST00000326595.11:ENST00000459746.5:ENST00000472582.5:ENST00000434467.5:ENST00000471681.5:ENST00000341455.10:ENST00000422788.5:ENST00000442522.6:ENST00000469966.1:ENST00000484623.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	44	2	2.36637	3.6845	5.00263	0.0500615	0.013055	0.17488	0.093385
chr18	9497411	9497511	6871353	0	+	0.53	(0.515,0.57]	chr18	680716	176	INTRON	INTRON	RALBP1	ENSG00000017797.13	ENST00000019317.8:ENST00000585015.6:ENST00000383432.8:ENST00000609094.2:ENST00000458039.3:ENST00000577221.1	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	2.23915	3.684445	5.12974	0.0596178	4.54392e-4	0.16883600000000001	0.0192381
chr15	101176800	101176898	6269055	0	-	0.408163	(0.378,0.408]	chr15	597914	12	UTR3	UTR3:EXON_MRNA	CHSY1	ENSG00000131873.7	ENST00000254190.4	protein_coding	protein_coding	protein_coding	protein_coding	1	37	2	2.36428	3.684435	5.00459	0.0441088	0.00371142	0.162255	0.0535094
chr6	133965567	133965667	2961880	0	+	0.27	[0,0.28]	chr6	278509	118	INTRON	INTRON	TBPL1	ENSG00000028839.10	ENST00000613034.4:ENST00000416965.5:ENST00000457715.1:ENST00000367871.5:ENST00000237264.9:ENST00000367869.1	protein_coding	protein_coding	protein_coding	protein_coding	3	72	2	2.06426	3.68425	5.30424	0.0168952	0.00584781	0.110899	0.0667594
chr17	80143971	80144071	6847014	0	-	0.35	(0.32,0.35]	chr17	677699	4	SS5_PROX	SS5_PROX:INTRON	EIF4A3	ENSG00000141543.12	ENST00000649764.2:ENST00000647795.1:ENST00000576547.2:ENST00000575957.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	53	2	3.45361	3.684235	3.91486	0.0450361	0.00193809	0.163255	0.0399255
chr1	32014677	32014777	62650	0	+	0.58	(0.57,1]	chr1	7938	3	SS5_PROX	SS5_PROX:INTRON	KHDRBS1	ENSG00000121774.18	ENST00000327300.12:ENST00000307714.12:ENST00000492989.1:ENST00000484270.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	44	2	3.5592	3.684215	3.80923	4.21089e-4	1.11529e-4	0.0183576	0.00945289
chr19	28545576	28545676	7166551	0	-	0.42	(0.408,0.44]	chr19	724193	104	INTRON	INTRON	ENSG00000283403	ENSG00000283403.1	ENST00000592347.5	lncRNA	lncRNA	lncRNA	lncRNA	4	65	2	1.92871	3.684055	5.4394	0.0127189	6.50925e-4	0.0986242	0.0232863
chr1	109376883	109376983	520809	0	-	0.42	(0.408,0.44]	chr1	61195	69	INTRON	INTRON	SORT1	ENSG00000134243.12	ENST00000538502.5:ENST00000256637.8:ENST00000493736.5:ENST00000482236.5:ENST00000633956.1:ENST00000471996.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	39	2	3.36378	3.683815	4.00385	0.0454568	0.0016048	0.149888	0.0367961
chr9	123914098	123914198	4345866	0	-	0.45	(0.44,0.476]	chr9	399137	347	INTRON	INTRON	DENND1A	ENSG00000119522.17	ENST00000373624.6:ENST00000394215.7:ENST00000373620.7:ENST00000373618.1	protein_coding	protein_coding	protein_coding	protein_coding	2	51	2	1.96602	3.68377	5.40152	0.0426807	2.39829e-4	0.148082	0.0136403
chr3	73007433	73007533	1452060	0	+	0.33	(0.32,0.35]	chr3	152951	89	INTRON	INTRON	PPP4R2	ENSG00000163605.15	ENST00000482242.5:ENST00000356692.10:ENST00000470976.1:ENST00000488810.5:ENST00000495566.1:ENST00000476505.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	42	2	2.57263	3.683725	4.79482	0.0312297	0.00447781	0.13151	0.0610799
chr16	28155596	28155690	6467893	0	-	0.361702	(0.35,0.378]	chr16	624551	1	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	XPO6	ENSG00000169180.12	ENST00000304658.10:ENST00000565698.5:ENST00000564337.5:ENST00000566175.1:ENST00000574435.1:ENST00000561488.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	53	2	2.80179	3.6836450000000003	4.5655	0.0155464	0.00223906	0.100909	0.0435144
chr7	102372837	102372936	3371163	0	+	0.393939	(0.378,0.408]	chr7	315430	64	INTRON	INTRON	PRKRIP1:ENSG00000239969	ENSG00000128563.13:ENSG00000239969.6	ENST00000477886.5:ENST00000469763.5:ENST00000482549.5:ENST00000496391.5:ENST00000484974.5:ENST00000492837.1:ENST00000482465.5	protein_coding	protein_coding	protein_coding:transcribed_unprocessed_pseudogene	protein_coding:processed_transcript	1	40	2	2.13703	3.68357	5.23011	0.0797592	5.72873e-4	0.19979	0.0217398
chr12	76832878	76832978	5174555	0	+	0.36	(0.35,0.378]	chr12	490143	40	INTRON	INTRON	ZDHHC17	ENSG00000186908.15	ENST00000426126.7	protein_coding	protein_coding	protein_coding	protein_coding	5	76	2	1.71241	3.68329	5.65417	0.019274	4.33402e-4	0.119831	0.0190829
chr15	65757968	65758068	6209449	0	-	0.38	(0.378,0.408]	chr15	592605	11	INTRON	INTRON	DENND4A	ENSG00000174485.16	ENST00000443035.8:ENST00000431932.6:ENST00000635620.2:ENST00000564674.5:ENST00000568515.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	50	2	2.70298	3.68318	4.66338	0.0103469	0.00325723	0.0850389	0.0524329
chr5	149548252	149548350	2751051	0	-	0.540816	(0.515,0.57]	chr5	259084	26	INTRON	INTRON	CSNK1A1	ENSG00000113712.19	ENST00000261798.10:ENST00000377843.8:ENST00000657001.1:ENST00000515768.6:ENST00000606719.6:ENST00000657462.1:ENST00000661952.1:ENST00000504676.5:ENST00000515435.5:ENST00000662268.1:ENST00000657706.1:ENST00000670598.1:ENST00000523203.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	55	2	1.75372	3.6831050000000003	5.61249	0.0386904	4.24748e-5	0.14279	0.00526976
chr19	2147558	2147658	7115512	0	-	0.36	(0.35,0.378]	chr19	715270	85	INTRON	INTRON	AP3D1	ENSG00000065000.19	ENST00000643116.3:ENST00000345016.9:ENST00000643010.1:ENST00000591284.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	40	2	2.47065	3.68294	4.89523	0.0386172	0.00253947	0.142656	0.0465056
chr18	2656461	2656561	6864867	0	+	0.72	(0.57,1]	chr18	679939	2	SS5_PROX	SS5_PROX:INTRON	SMCHD1	ENSG00000101596.17	ENST00000320876.11:ENST00000688342.1:ENST00000684915.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	120	2	3.62111	3.6829	3.74469	1.50694e-6	7.14083e-8	8.03394e-4	1.16459e-4
chr5	98920749	98920849	2683992	0	-	0.4	(0.378,0.408]	chr5	253957	153	INTRON	INTRON	CHD1	ENSG00000153922.11	ENST00000614616.5:ENST00000284049.7	protein_coding	protein_coding	protein_coding	protein_coding	3	109	2	2.95439	3.6828600000000002	4.41133	0.00148165	7.14056e-6	0.0349546	0.00189435
chr15	69437397	69437484	6058987	0	+	0.264368	[0,0.28]	chr15	576789	3	INTRON	INTRON	KIF23	ENSG00000137807.16	ENST00000260363.9:ENST00000643966.1:ENST00000395392.6:ENST00000352331.8:ENST00000561089.5:ENST00000647715.1:ENST00000679126.1:ENST00000559279.6:ENST00000558585.5:ENST00000559456.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	59	2	2.10688	3.6825149999999995	5.25815	0.0307985	0.0066548	0.143385	0.0703807
chr1	21037177	21037276	392223	0	-	0.313131	(0.28,0.32]	chr1	46809	340	INTRON	INTRON	EIF4G3	ENSG00000075151.24	ENST00000374935.7:ENST00000602326.6:ENST00000685872.1:ENST00000264211.13:ENST00000686579.1:ENST00000688741.1:ENST00000684485.1:ENST00000681717.1:ENST00000681767.1:ENST00000400422.6:ENST00000634879.2:ENST00000693470.1:ENST00000685814.1:ENST00000356916.7:ENST00000682284.1:ENST00000438975.5:ENST00000411888.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	45	2	2.67975	3.6825099999999997	4.68527	0.0252505	0.00819419	0.12011	0.0810802
chr12	56448709	56448809	5335251	0	-	0.33	(0.32,0.35]	chr12	509962	141	INTRON	INTRON	TIMELESS	ENSG00000111602.12	ENST00000553532.6:ENST00000229201.4	protein_coding	protein_coding	protein_coding	protein_coding	1	44	2	2.89743	3.682505	4.46758	0.0127608	0.0119306	0.0962115	0.0926667
chr12	132854142	132854242	5450498	0	-	0.34	(0.32,0.35]	chr12	522180	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CHFR	ENSG00000072609.18	ENST00000450056.7:ENST00000266880.11:ENST00000443047.6:ENST00000315585.11:ENST00000432561.6:ENST00000535527.5:ENST00000511001.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	52	2	2.4053	3.682505	4.95971	0.0108284	0.00663522	0.0920575	0.0703181
chr9	130096565	130096665	4211391	0	+	0.53	(0.515,0.57]	chr9	386041	38	INTRON	INTRON	GPR107	ENSG00000148358.20	ENST00000372406.5:ENST00000372410.7:ENST00000347136.11:ENST00000493417.5:ENST00000610997.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	43	2	2.45585	3.682485	4.90912	0.00797827	0.0021669	0.0798772	0.0417866
chr1	155471191	155471290	561975	0	-	0.363636	(0.35,0.378]	chr1	67095	82	INTRON	INTRON	ASH1L	ENSG00000116539.14	ENST00000676814.1:ENST00000392403.8:ENST00000368346.7:ENST00000677213.1:ENST00000678117.1:ENST00000679097.1:ENST00000679333.1:ENST00000677042.1:ENST00000678699.1:ENST00000677825.1:ENST00000679133.1:ENST00000548830.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	77	2	1.91549	3.68234	5.44919	0.00887698	9.66659e-4	0.0849778	0.0282401
chr11	2951591	2951679	4891569	0	-	0.352273	(0.35,0.378]	chr11	458277	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NAP1L4	ENSG00000205531.13	ENST00000620138.4:ENST00000380542.9:ENST00000469805.5:ENST00000526115.5:ENST00000492594.6:ENST00000526023.5:ENST00000492685.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	114	2	2.96893	3.6822049999999997	4.39548	0.00149997	9.17511e-6	0.0351802	0.00217645
chr1	245870978	245871078	674333	0	-	0.33	(0.32,0.35]	chr1	79681	67	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000366517.5:ENST00000366516.5:ENST00000490107.6:ENST00000470510.5:ENST00000493441.5:ENST00000488153.5:ENST00000492487.5:ENST00000391836.3:ENST00000464398.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	52	2	2.07985	3.682175	5.2845	0.0303092	0.00240071	0.143025	0.0440612
chr19	2194103	2194193	6996478	0	+	0.455556	(0.44,0.476]	chr19	693455	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DOT1L	ENSG00000104885.19	ENST00000398665.8:ENST00000686010.1:ENST00000452696.5	protein_coding	protein_coding	protein_coding	protein_coding	3	57	2	1.87325	3.6821099999999998	5.49097	0.0265709	4.8612e-4	0.134088	0.0203841
chr17	30822528	30822628	6752218	0	-	0.35	(0.32,0.35]	chr17	663628	127	INTRON	INTRON	CRLF3	ENSG00000176390.12	ENST00000324238.7:ENST00000578692.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	39	2	2.90786	3.682075	4.45629	0.0246089	0.00993008	0.12011	0.0877296
chr3	5190174	5190272	1354205	0	+	0.346939	(0.32,0.35]	chr3	142413	7	INTRON	INTRON	EDEM1	ENSG00000134109.11	ENST00000434243.5:ENST00000256497.9:ENST00000465369.5:ENST00000465187.1:ENST00000445686.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	39	2	2.90786	3.682075	4.45629	0.0246089	0.00993008	0.12011	0.0877296
chr7	111286893	111286992	3621351	0	-	0.363636	(0.35,0.378]	chr7	337093	3230	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	77	2	1.43253	3.682	5.93147	0.0486238	1.32665e-4	0.173047	0.0104884
chr7	135969828	135969928	3649397	0	-	0.26	[0,0.28]	chr7	339214	178	INTRON	INTRON	MTPN	ENSG00000105887.11	ENST00000393085.4:ENST00000435723.1	protein_coding	protein_coding	protein_coding	protein_coding	1	48	2	2.27119	3.682	5.09281	0.070351	0.00372534	0.184298	0.0561984
chr1	35978955	35979054	71629	0	+	0.282828	(0.28,0.32]	chr1	9158	51	INTRON	INTRON	AGO3	ENSG00000126070.20	ENST00000324350.9:ENST00000397828.3:ENST00000634486.1:ENST00000373191.9:ENST00000246314.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	42	2	3.02632	3.681985	4.33765	0.039714	0.0071944	0.143072	0.0756118
chr12	55801496	55801592	5332668	0	-	0.291667	(0.28,0.32]	chr12	509164	2	INTRON	INTRON	SARNP	ENSG00000205323.9	ENST00000546604.5:ENST00000552884.5:ENST00000336133.8:ENST00000552080.1:ENST00000552207.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	42	2	3.02632	3.681985	4.33765	0.039714	0.0071944	0.143072	0.0756118
chr15	30642117	30642213	5992435	0	+	0.28125	(0.28,0.32]	chr15	569739	1	INTRON	INTRON	ENSG00000284906:ARHGAP11B	ENSG00000284906.3:ENSG00000285077.3	ENST00000564902.5:ENST00000428041.4:ENST00000693711.1:ENST00000685924.1:ENST00000563110.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	42	2	3.02632	3.681985	4.33765	0.039714	0.0071944	0.143072	0.0756118
chr3	179159096	179159196	1565908	0	+	0.29	(0.28,0.32]	chr3	161904	90	INTRON	INTRON	PIK3CA	ENSG00000121879.6	ENST00000477735.1:ENST00000263967.4:ENST00000643187.1:ENST00000675786.1:ENST00000468036.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	42	2	3.02632	3.681985	4.33765	0.039714	0.0071944	0.143072	0.0756118
chr1	173862867	173862965	587040	0	-	0.428571	(0.408,0.44]	chr1	70634	32	INTRON	INTRON	GAS5	ENSG00000234741.9	ENST00000651080.1	lncRNA	lncRNA	lncRNA	lncRNA	4	82	2	2.43321	3.681725	4.93024	0.0019051	0.00170369	0.0394485	0.0381936
chr2	86951860	86951956	824515	0	+	0.4375	(0.408,0.44]	chr2	92117	1	INTRON	INTRON	RGPD1	ENSG00000187627.17	ENST00000409776.6:ENST00000641339.1:ENST00000398193.8:ENST00000641458.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	65	2	1.96973	3.681465	5.3932	0.0108773	7.81492e-4	0.0923273	0.0257168
chr1	21030583	21030682	392157	0	-	0.343434	(0.32,0.35]	chr1	46809	274	INTRON	INTRON	EIF4G3	ENSG00000075151.24	ENST00000374935.7:ENST00000602326.6:ENST00000685872.1:ENST00000264211.13:ENST00000686579.1:ENST00000688741.1:ENST00000684485.1:ENST00000681717.1:ENST00000681767.1:ENST00000400422.6:ENST00000634879.2:ENST00000693470.1:ENST00000685814.1:ENST00000356916.7:ENST00000682284.1:ENST00000438975.5:ENST00000411888.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	39	2	2.40308	3.681395	4.95971	0.0417732	0.00663522	0.161736	0.0703181
chr12	96392998	96393098	5395211	0	-	0.34	(0.32,0.35]	chr12	514463	578	INTRON	INTRON	CDK17	ENSG00000059758.8	ENST00000261211.8:ENST00000543119.6:ENST00000542666.5:ENST00000551816.5:ENST00000552496.5:ENST00000552262.1	protein_coding	protein_coding	protein_coding	protein_coding	1	39	2	2.40308	3.681395	4.95971	0.0417732	0.00663522	0.161736	0.0703181
chr3	60424716	60424816	1713861	0	-	0.35	(0.32,0.35]	chr3	176138	3440	INTRON	INTRON	FHIT	ENSG00000189283.10	ENST00000492590.6:ENST00000476844.5:ENST00000468189.5:ENST00000488467.5	protein_coding	protein_coding	protein_coding	protein_coding	1	39	2	2.40308	3.681395	4.95971	0.0417732	0.00663522	0.161736	0.0703181
chr6	7199513	7199612	2799287	0	+	0.323232	(0.32,0.35]	chr6	263761	98	INTRON	INTRON	RREB1	ENSG00000124782.21	ENST00000379933.7:ENST00000471433.5:ENST00000379938.7:ENST00000349384.10:ENST00000334984.10:ENST00000475946.5:ENST00000483150.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	39	2	2.40308	3.681395	4.95971	0.0417732	0.00663522	0.161736	0.0703181
chr5	87282576	87282676	2410935	0	+	0.37	(0.35,0.378]	chr5	232377	129	INTRON	INTRON	RASA1	ENSG00000145715.15	ENST00000274376.11:ENST00000515800.6:ENST00000456692.6:ENST00000506290.1:ENST00000512763.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	40	2	2.39939	3.6813450000000003	4.9633	0.0458078	0.00198929	0.149888	0.0411469
chr1	28087623	28087723	408998	0	-	0.47	(0.44,0.476]	chr1	49222	292	INTRON	INTRON	EYA3	ENSG00000158161.16	ENST00000373871.8:ENST00000540618.5:ENST00000436342.6:ENST00000373863.3:ENST00000471498.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	36	2	3.02366	3.681325	4.33899	0.0206616	0.00603307	0.110999	0.0700813
chr11	117246119	117246213	4869571	0	+	0.457447	(0.44,0.476]	chr11	454506	12	INTRON	INTRON	RNF214	ENSG00000167257.11	ENST00000300650.9:ENST00000529869.1:ENST00000531452.5:ENST00000531287.5:ENST00000530849.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	36	2	3.02366	3.681325	4.33899	0.0206616	0.00603307	0.110999	0.0700813
chr12	116107724	116107823	5423845	0	-	0.454545	(0.44,0.476]	chr12	518251	106	INTRON	INTRON	MED13L	ENSG00000123066.9	ENST00000281928.9:ENST00000650226.1:ENST00000548743.2:ENST00000647567.1	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	3.02366	3.681325	4.33899	0.0206616	0.00603307	0.110999	0.0700813
chr5	69919635	69919734	2382200	0	+	0.444444	(0.44,0.476]	chr5	229562	30	INTRON	INTRON	GUSBP13	ENSG00000198237.8	ENST00000506490.2	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	1	36	2	3.02366	3.681325	4.33899	0.0206616	0.00603307	0.110999	0.0700813
chr9	131510592	131510685	4218169	0	+	0.462366	(0.44,0.476]	chr9	386934	2	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	POMT1	ENSG00000130714.19	ENST00000372228.9:ENST00000341012.13:ENST00000677216.1:ENST00000676640.1:ENST00000402686.8:ENST00000441334.5:ENST00000677029.1:ENST00000684579.1:ENST00000678833.1:ENST00000677853.1:ENST00000683392.1:ENST00000678548.1:ENST00000679023.1:ENST00000679111.1:ENST00000676803.1:ENST00000678942.2:ENST00000677586.1:ENST00000677293.1:ENST00000677626.1:ENST00000678303.1:ENST00000678707.1:ENST00000372220.5:ENST00000676835.1:ENST00000678546.1:ENST00000683712.1:ENST00000415075.6:ENST00000404875.7:ENST00000678366.1:ENST00000677295.2:ENST00000677099.1:ENST00000682070.1:ENST00000678739.1:ENST00000678626.1:ENST00000679189.1:ENST00000677677.1:ENST00000678264.2:ENST00000682813.1:ENST00000423007.6:ENST00000683900.1:ENST00000679076.1:ENST00000684062.1:ENST00000677444.1:ENST00000677944.1:ENST00000683134.1:ENST00000679073.1:ENST00000678733.1:ENST00000485278.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	36	2	3.02366	3.681325	4.33899	0.0206616	0.00603307	0.110999	0.0700813
chr4	47858156	47858256	2134742	0	-	0.36	(0.35,0.378]	chr4	210393	26	INTRON	INTRON	NFXL1	ENSG00000170448.12	ENST00000329043.7:ENST00000464756.6:ENST00000381538.7:ENST00000507489.2:ENST00000502448.5:ENST00000507131.5:ENST00000508115.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	40	2	2.53856	3.681165	4.82377	0.0326077	0.00325499	0.133687	0.0524329
chr1	61709328	61709382	468213	0	-	0.388889	(0.378,0.408]	chr1	56573	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	TM2D1	ENSG00000162604.12	ENST00000606498.5:ENST00000294613.9:ENST00000371180.6:ENST00000488206.5:ENST00000472989.5:ENST00000468586.5:ENST00000371178.5:ENST00000494926.5:ENST00000496465.1:ENST00000371177.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	48	2	2.29798	3.68105	5.06412	0.0147606	0.0030522	0.106702	0.0493883
chr17	75387894	75387994	6837621	0	-	0.36	(0.35,0.378]	chr17	675719	1	SS3_PROX	SS3_PROX:INTRON	GRB2	ENSG00000177885.15	ENST00000316615.9:ENST00000316804.10:ENST00000392562.5:ENST00000392564.5:ENST00000392563.5:ENST00000648046.1:ENST00000578961.5:ENST00000582582.1:ENST00000583912.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	37	2	2.79643	3.680965	4.5655	0.0155464	0.013543	0.101363	0.100909
chr19	21102085	21102184	7039717	0	+	0.353535	(0.35,0.378]	chr19	701897	28	INTRON	INTRON	ZNF714	ENSG00000160352.16	ENST00000616183.1:ENST00000596053.5:ENST00000618422.1:ENST00000456283.7:ENST00000613286.4:ENST00000425625.5:ENST00000618008.4:ENST00000610902.4:ENST00000620627.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	37	2	2.79643	3.680965	4.5655	0.0155464	0.013543	0.101363	0.100909
chr2	177320234	177320332	1276416	0	-	0.367347	(0.35,0.378]	chr2	134749	19	INTRON	INTRON	NFE2L2:ENSG00000213963	ENSG00000116044.16:ENSG00000213963.6	ENST00000464747.5:ENST00000397057.6:ENST00000456746.5:ENST00000430416.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	1	37	2	2.79643	3.680965	4.5655	0.0155464	0.013543	0.101363	0.100909
chr6	161102145	161102198	3025625	0	+	0.377358	(0.35,0.378]	chr6	282418	2	SS5_PROX	SS5_PROX:INTRON	MAP3K4	ENSG00000085511.20	ENST00000366919.6:ENST00000392142.9:ENST00000366920.6:ENST00000348824.11:ENST00000544041.5:ENST00000490904.6:ENST00000541901.5:ENST00000544733.5:ENST00000536852.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	37	2	2.79643	3.680965	4.5655	0.0155464	0.013543	0.101363	0.100909
chr12	70293077	70293175	5166932	0	+	0.183673	[0,0.28]	chr12	489393	19	INTRON	INTRON	CNOT2	ENSG00000111596.14	ENST00000547780.5:ENST00000418359.7:ENST00000552319.5:ENST00000550160.5:ENST00000551661.5:ENST00000551132.5:ENST00000553078.5:ENST00000548021.5:ENST00000550641.6:ENST00000229195.8:ENST00000552915.5:ENST00000549443.5:ENST00000548741.5:ENST00000552483.5:ENST00000552422.5:ENST00000547321.5:ENST00000553020.5:ENST00000548159.5:ENST00000549750.5:ENST00000551043.5:ENST00000548599.5:ENST00000550194.5:ENST00000551873.5:ENST00000547867.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	59	2	2.05756	3.6809000000000003	5.30424	0.0352544	0.00584781	0.150301	0.0667594
chr3	142003843	142003943	1833984	0	-	0.3	(0.28,0.32]	chr3	184334	31	INTRON	INTRON	TFDP2	ENSG00000114126.18	ENST00000489671.6:ENST00000486111.5:ENST00000477292.5:ENST00000495310.5:ENST00000467072.5:ENST00000487734.5:ENST00000479040.5:ENST00000467667.5:ENST00000478006.5:ENST00000497579.5:ENST00000464782.5:ENST00000488107.6:ENST00000475734.5:ENST00000471095.5:ENST00000494358.5:ENST00000467634.1:ENST00000495095.6:ENST00000476617.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	60	2	2.00989	3.6808899999999998	5.35189	0.0427801	8.52844e-4	0.148082	0.0264928
chr6	135022866	135022966	3225147	0	-	0.3	(0.28,0.32]	chr6	299837	197	INTRON	INTRON	HBS1L	ENSG00000112339.15	ENST00000367837.10:ENST00000527578.5:ENST00000415177.6:ENST00000367826.6:ENST00000533274.5:ENST00000526100.5:ENST00000529641.5:ENST00000527507.1:ENST00000314674.7:ENST00000524715.5:ENST00000529882.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	98	2	3.30263	3.680835	4.05904	0.0038504	9.15765e-5	0.0542786	0.00800742
chr1	50550308	50550407	448141	0	-	0.444444	(0.44,0.476]	chr1	54189	102	INTRON	INTRON	FAF1	ENSG00000185104.21	ENST00000396153.7:ENST00000494400.5:ENST00000472808.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	106	2	3.08877	3.680725	4.27268	5.52878e-4	2.96005e-5	0.021371	0.00451038
chr5	140493033	140493132	2503761	0	+	0.454545	(0.44,0.476]	chr5	239246	56	INTRON	INTRON	ANKHD1	ENSG00000131503.21	ENST00000297183.10:ENST00000360839.7:ENST00000421134.5:ENST00000246149.10:ENST00000412116.5:ENST00000506755.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	38	2	2.29842	3.68065	5.06288	0.0552483	0.00102416	0.165463	0.0294041
chr1	161019209	161019309	573369	0	-	0.36	(0.35,0.378]	chr1	69501	162	INTRON	INTRON	F11R:ENSG00000270149	ENSG00000158769.18:ENSG00000270149.5	ENST00000621309.4:ENST00000368026.11:ENST00000289779.7:ENST00000537746.1:ENST00000470694.1:ENST00000335772.3:ENST00000602966.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	37	2	2.57049	3.6806400000000004	4.79079	0.0262669	0.00846427	0.133676	0.0776969
chr14	30616277	30616355	5674982	0	+	0.371795	(0.35,0.378]	chr14	540602	1	CDS	CDS:UTR3:EXON_MRNA	G2E3	ENSG00000092140.16	ENST00000206595.11:ENST00000438909.6:ENST00000648008.1:ENST00000553504.5:ENST00000549159.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	37	2	2.57049	3.6806400000000004	4.79079	0.0262669	0.00846427	0.133676	0.0776969
chr7	156855779	156855879	3687644	0	-	0.3	(0.28,0.32]	chr7	342096	185	INTRON	INTRON	LMBR1	ENSG00000105983.23	ENST00000353442.10:ENST00000415428.5:ENST00000454132.5:ENST00000434503.5:ENST00000430278.5:ENST00000434278.5:ENST00000444719.5:ENST00000461469.5:ENST00000414218.1:ENST00000434453.1:ENST00000498034.5:ENST00000433968.5:ENST00000485985.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	97	2	3.49198	3.68051	3.86904	0.00195595	2.33993e-4	0.0400756	0.0135358
chr4	109479578	109479678	2019030	0	+	0.45	(0.44,0.476]	chr4	200766	60	INTRON	INTRON	SEC24B	ENSG00000138802.11	ENST00000504968.6:ENST00000399100.6:ENST00000265175.5	protein_coding	protein_coding	protein_coding	protein_coding	1	40	2	3.02751	3.680485	4.33346	0.0120349	0.00715968	0.0962115	0.0723634
chr19	1808988	1809065	7113426	0	-	0.467532	(0.44,0.476]	chr19	714789	3	INTRON	INTRON	ATP8B3	ENSG00000130270.16	ENST00000310127.10:ENST00000531925.5:ENST00000525591.5:ENST00000526092.6:ENST00000533993.5:ENST00000587160.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	36	2	2.39604	3.680475	4.96491	0.0404291	0.0034249	0.161534	0.0517761
chr2	167832924	167833024	1258129	0	-	0.47	(0.44,0.476]	chr2	133322	173	INTRON	INTRON	B3GALT1-AS1	ENSG00000235335.3	ENST00000430546.2:ENST00000657553.1:ENST00000670221.1:ENST00000436982.2	lncRNA	lncRNA	lncRNA	lncRNA	1	36	2	2.39604	3.680475	4.96491	0.0404291	0.0034249	0.161534	0.0517761
chr22	23187412	23187512	7483272	0	+	0.44	(0.408,0.44]	chr22	763531	48	INTRON	INTRON	BCR	ENSG00000186716.21	ENST00000479188.5:ENST00000359540.7:ENST00000305877.13	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	104	2	3.45541	3.68044	3.90547	2.03612e-4	7.81911e-5	0.0129859	0.00736696
chr9	130586684	130586784	4213163	0	+	0.42	(0.408,0.44]	chr9	386268	47	INTRON	INTRON	FUBP3	ENSG00000107164.16	ENST00000319725.10:ENST00000650723.1:ENST00000465949.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	104	2	3.40063	3.68041	3.96019	1.56132e-4	1.06576e-4	0.0113571	0.00874587
chr13	112699302	112699402	5546343	0	+	0.36	(0.35,0.378]	chr13	529917	20	INTRON	INTRON	ATP11A	ENSG00000068650.19	ENST00000375645.8:ENST00000375630.6:ENST00000487903.5:ENST00000419448.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	39	2	3.16371	3.680405	4.1971	0.0367539	0.00383956	0.138959	0.0562562
chr7	153403643	153403738	3682114	0	-	0.305263	(0.28,0.32]	chr7	341727	1	EXON_LNCRNA	EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	LINC01287	ENSG00000234722.5	ENST00000647863.1:ENST00000453187.2:ENST00000664249.1:ENST00000663745.1:ENST00000659532.1:ENST00000670362.1:ENST00000669043.1:ENST00000662626.1:ENST00000669109.1:ENST00000657245.1:ENST00000662979.1:ENST00000666243.1:ENST00000670171.1:ENST00000662256.1:ENST00000661522.1:ENST00000660414.1:ENST00000669159.1:ENST00000658753.1:ENST00000671302.1:ENST00000668024.1:ENST00000669370.1:ENST00000667969.1:ENST00000655449.1:ENST00000669818.1:ENST00000454441.2:ENST00000663904.1:ENST00000661082.1:ENST00000653989.1:ENST00000669107.1:ENST00000665909.1:ENST00000665005.1:ENST00000658825.1:ENST00000669410.1:ENST00000664034.1:ENST00000670343.1:ENST00000665256.1	lncRNA	lncRNA	lncRNA	lncRNA	1	50	2	3.12332	3.680255	4.23719	0.0264147	0.00698537	0.133676	0.0718189
chr7	116963608	116963707	3386087	0	+	0.424242	(0.408,0.44]	chr7	317128	39	INTRON	INTRON	ST7:ST7-OT4	ENSG00000004866.22:ENSG00000214188.9	ENST00000393446.6:ENST00000265437.9:ENST00000393451.7:ENST00000438863.5:ENST00000393449.5:ENST00000443979.5:ENST00000323984.8:ENST00000417919.5:ENST00000446490.5:ENST00000466018.5:ENST00000471110.5:ENST00000470996.4:ENST00000397751.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:nonsense_mediated_decay:lncRNA	2	52	2	2.36185	3.68011	4.99837	0.0133164	0.00131369	0.094512	0.0333932
chr16	14576776	14576872	6449295	0	-	0.46875	(0.44,0.476]	chr16	621255	1	INTRON	INTRON	PARN	ENSG00000140694.17	ENST00000651865.1:ENST00000437198.7:ENST00000651348.1:ENST00000650990.1:ENST00000651760.1:ENST00000652541.1:ENST00000652727.1:ENST00000652066.1:ENST00000651300.1:ENST00000420015.6:ENST00000652051.1:ENST00000341484.11:ENST00000539279.5:ENST00000651049.1:ENST00000650960.1:ENST00000651634.1:ENST00000564113.6:ENST00000652411.1:ENST00000652501.1:ENST00000651027.1:ENST00000651913.1:ENST00000563641.6:ENST00000569444.5:ENST00000563697.5:ENST00000562715.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	38	2	2.74063	3.680085	4.61954	0.0176095	0.00506805	0.105143	0.0646039
chr16	70123197	70123296	6383522	0	+	0.464646	(0.44,0.476]	chr16	613459	21	INTRON	INTRON	PDPR	ENSG00000090857.14	ENST00000288050.9:ENST00000561920.5:ENST00000568530.5:ENST00000398122.7:ENST00000565186.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	38	2	2.74063	3.680085	4.61954	0.0176095	0.00506805	0.105143	0.0646039
chr3	47914516	47914616	1685741	0	-	0.38	(0.378,0.408]	chr3	172214	3	SS5_PROX	SS5_PROX:INTRON	MAP4	ENSG00000047849.22	ENST00000683076.1:ENST00000395734.7:ENST00000426837.6:ENST00000360240.10:ENST00000482752.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	82	2	3.23708	3.6799350000000004	4.12279	0.00365053	3.95714e-5	0.0535094	0.00509892
chr6	17942915	17943015	3068105	0	-	0.4	(0.378,0.408]	chr6	285100	444	INTRON	INTRON	KIF13A	ENSG00000137177.20	ENST00000378814.9:ENST00000259711.11:ENST00000378826.6:ENST00000378843.6:ENST00000636847.1:ENST00000507576.1:ENST00000505588.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	82	2	3.23708	3.6799350000000004	4.12279	0.00365053	3.95714e-5	0.0535094	0.00509892
chr12	79820093	79820183	5375371	0	-	0.388889	(0.378,0.408]	chr12	512744	8	INTRON	INTRON	PPP1R12A	ENSG00000058272.19	ENST00000261207.9:ENST00000450142.7:ENST00000437004.6:ENST00000546369.5:ENST00000550107.5:ENST00000547330.5:ENST00000547131.1	protein_coding	protein_coding	protein_coding	protein_coding	2	48	2	2.35527	3.67993	5.00459	0.0121511	0.00371142	0.0963966	0.0535094
chr2	31881790	31881890	1089819	0	-	0.4	(0.378,0.408]	chr2	116861	115	INTRON	INTRON	MEMO1:DPY30	ENSG00000162959.14:ENSG00000162961.14	ENST00000295065.9:ENST00000446765.5:ENST00000404530.6:ENST00000379383.7:ENST00000490459.5:ENST00000426310.6:ENST00000422936.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	48	2	2.35527	3.67993	5.00459	0.0121511	0.00371142	0.0963966	0.0535094
chr10	50541599	50541699	4619866	0	-	0.54	(0.515,0.57]	chr10	425452	213	INTRON	INTRON	SGMS1	ENSG00000198964.14	ENST00000429490.5:ENST00000361781.7:ENST00000619438.4:ENST00000609445.5:ENST00000608287.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	34	2	2.76354	3.67992	4.5963	0.0147344	0.00370287	0.0983813	0.0561162
chr11	47519663	47519762	4950066	0	-	0.565657	(0.515,0.57]	chr11	464238	49	INTRON	INTRON	CELF1	ENSG00000149187.19	ENST00000310513.10:ENST00000687097.1:ENST00000531165.5:ENST00000532048.5:ENST00000530151.5:ENST00000525841.5:ENST00000528434.5:ENST00000543178.5:ENST00000526419.1:ENST00000528538.5:ENST00000526277.1	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	2.76354	3.67992	4.5963	0.0147344	0.00370287	0.0983813	0.0561162
chr13	112549771	112549871	5651327	0	-	0.54	(0.515,0.57]	chr13	538494	12	INTRON	INTRON	TUBGCP3	ENSG00000126216.15	ENST00000261965.8:ENST00000649778.1:ENST00000375669.7:ENST00000464139.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	34	2	2.76354	3.67992	4.5963	0.0147344	0.00370287	0.0983813	0.0561162
chr14	74886822	74886921	5789823	0	+	0.555556	(0.515,0.57]	chr14	548563	8	INTRON	INTRON	DLST	ENSG00000119689.15	ENST00000556460.5:ENST00000555492.5:ENST00000557012.5:ENST00000554612.5:ENST00000334220.9:ENST00000238671.11:ENST00000556582.5:ENST00000555071.5:ENST00000555190.5:ENST00000555459.5:ENST00000555089.5:ENST00000626051.1:ENST00000554806.5:ENST00000555988.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	34	2	2.76354	3.67992	4.5963	0.0147344	0.00370287	0.0983813	0.0561162
chr4	2496606	2496706	1912103	0	+	0.52	(0.515,0.57]	chr4	191934	2	SS3_PROX	SS3_PROX:INTRON	RNF4	ENSG00000063978.16	ENST00000503659.5:ENST00000504224.5:ENST00000541204.5:ENST00000502316.5:ENST00000509388.5:ENST00000507247.5:ENST00000314289.13:ENST00000511843.5:ENST00000509258.5:ENST00000513284.5:ENST00000507784.5:ENST00000513578.5:ENST00000511859.5:ENST00000511892.5:ENST00000513643.5:ENST00000503123.5:ENST00000509206.1:ENST00000506706.5:ENST00000511600.5:ENST00000513450.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	34	2	2.76354	3.67992	4.5963	0.0147344	0.00370287	0.0983813	0.0561162
chr1	241850986	241851086	344398	0	+	0.47	(0.44,0.476]	chr1	40090	4	SS5_PROX	SS5_PROX:INTRON	EXO1	ENSG00000174371.17	ENST00000366548.8:ENST00000423131.5:ENST00000523590.5:ENST00000348581.9:ENST00000518483.5:ENST00000437497.5:ENST00000450748.1:ENST00000493702.5:ENST00000469419.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	47	2	2.33272	3.679875	5.02703	0.0129984	0.00278015	0.0991656	0.0469265
chr16	20839554	20839654	6318301	0	+	0.42	(0.408,0.44]	chr16	604761	4	SS3_PROX	SS3_PROX:INTRON	REXO5	ENSG00000005189.20	ENST00000566993.5:ENST00000348433.10:ENST00000261377.11:ENST00000564274.5:ENST00000561474.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	57	2	2.22268	3.67985	5.13702	0.00770925	0.00202889	0.0784002	0.04086
chr1	61225236	61225336	128825	0	+	0.45	(0.44,0.476]	chr1	14782	213	INTRON	INTRON	NFIA	ENSG00000162599.17	ENST00000371191.5:ENST00000664495.1:ENST00000476646.5:ENST00000407417.7:ENST00000479364.1:ENST00000371189.8:ENST00000670151.1:ENST00000664149.1:ENST00000662015.1:ENST00000403491.8:ENST00000371187.7:ENST00000485903.6:ENST00000371185.6:ENST00000371184.6:ENST00000663597.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	52	2	2.42996	3.6798200000000003	4.92968	0.0104804	0.00171443	0.0855777	0.0381936
chr21	39230806	39230902	7464692	0	-	0.40625	(0.378,0.408]	chr21	760450	10	INTRON	INTRON	BRWD1	ENSG00000185658.14	ENST00000333229.6:ENST00000342449.8:ENST00000446924.5:ENST00000380800.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	240	2	3.27681	3.679805	4.0828	4.27981e-6	1.95472e-6	0.00151054	8.48598e-4
chr15	50604219	50604310	6172437	0	-	0.384615	(0.378,0.408]	chr15	588283	4	UTR3	UTR3:EXON_MRNA:INTRON	TRPM7	ENSG00000092439.16	ENST00000646667.1:ENST00000560955.5:ENST00000560638.1	protein_coding	protein_coding	protein_coding	protein_coding	2	48	2	2.23831	3.6797949999999995	5.12128	0.0179575	0.00251746	0.114265	0.0446195
chr1	27450116	27450216	406364	0	-	0.45	(0.44,0.476]	chr1	48986	208	INTRON	INTRON	WASF2	ENSG00000158195.11	ENST00000618852.5:ENST00000536657.1	protein_coding	protein_coding	protein_coding	protein_coding	2	48	2	2.59888	3.67978	4.76068	0.00653414	0.00487719	0.0699952	0.0640618
chr16	68102895	68102995	6370399	0	+	0.39	(0.378,0.408]	chr16	612188	133	INTRON	INTRON	ENSG00000261864:NFATC3	ENSG00000261864.1:ENSG00000072736.19	ENST00000548144.1:ENST00000563319.5:ENST00000569766.5:ENST00000553077.5:ENST00000566301.5:ENST00000549350.5:ENST00000566893.5:ENST00000575270.5:ENST00000561714.5:ENST00000346183.8:ENST00000568466.6:ENST00000539828.6:ENST00000562171.1:ENST00000349223.9:ENST00000329524.8:ENST00000379165.8:ENST00000562926.5:ENST00000570212.5:ENST00000563796.5:ENST00000567152.5:ENST00000563288.5:ENST00000535127.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA:processed_transcript	1	39	2	2.66785	3.6797700000000004	4.69169	0.0224639	0.00432302	0.11692	0.0599409
chr2	180858082	180858182	935239	0	+	0.38	(0.378,0.408]	chr2	102582	302	INTRON	INTRON	SCHLAP1	ENSG00000281131.1	ENST00000629145.1	lncRNA	lncRNA	lncRNA	lncRNA	1	39	2	2.66785	3.6797700000000004	4.69169	0.0224639	0.00432302	0.11692	0.0599409
chr20	47282417	47282517	7348760	0	-	0.52	(0.515,0.57]	chr20	749299	2	SS3_PROX	SS3_PROX:INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000467200.6:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000468376.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	108	2	2.97816	3.679655	4.38115	2.365e-4	5.49576e-6	0.0140941	0.00162772
chr7	76965009	76965109	3341206	0	+	0.51	(0.476,0.515]	chr7	311197	28	INTRON	INTRON	DTX2P1-UPK3BP1-PMS2P11	ENSG00000265479.7	ENST00000636308.1:ENST00000636708.1	lncRNA	lncRNA	lncRNA	lncRNA	2	51	2	1.86492	3.67963	5.49434	0.0550347	1.62782e-4	0.165463	0.0109774
chr1	114491565	114491665	527703	0	-	0.41	(0.408,0.44]	chr1	62153	268	INTRON	INTRON	TRIM33	ENSG00000197323.12	ENST00000358465.7:ENST00000369543.6	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	2.36073	3.6795500000000003	4.99837	0.0481658	0.00131369	0.153019	0.0333932
chr5	6625869	6625969	2566706	0	-	0.41	(0.408,0.44]	chr5	245963	2	SS3_PROX	SS3_PROX:INTRON	NSUN2	ENSG00000037474.15	ENST00000264670.11:ENST00000504374.5:ENST00000506139.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	38	2	2.36073	3.6795500000000003	4.99837	0.0481658	0.00131369	0.153019	0.0333932
chr17	42013673	42013772	6770843	0	-	0.393939	(0.378,0.408]	chr17	666689	8	EXON_MRNA	EXON_MRNA:INTRON	DNAJC7	ENSG00000168259.17	ENST00000316603.12:ENST00000457167.9:ENST00000586335.2:ENST00000674306.1:ENST00000426588.7:ENST00000674504.1:ENST00000674472.1:ENST00000674233.1:ENST00000674166.1:ENST00000674179.1:ENST00000674481.1:ENST00000674249.1:ENST00000585866.6:ENST00000589576.6:ENST00000674214.1:ENST00000588814.5:ENST00000590774.6:ENST00000674303.1:ENST00000674453.1:ENST00000674252.1:ENST00000674287.1:ENST00000674497.1:ENST00000674411.1:ENST00000585693.2:ENST00000674337.1:ENST00000590847.2:ENST00000674485.1:ENST00000674175.1:ENST00000589810.5:ENST00000588641.6:ENST00000590348.6:ENST00000589586.6:ENST00000589773.5:ENST00000674425.1:ENST00000591787.1:ENST00000589547.1:ENST00000586240.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	36	2	2.85854	3.67955	4.50056	0.015974	0.0107837	0.101453	0.0920575
chr5	146506283	146506364	2516119	0	+	0.407407	(0.378,0.408]	chr5	240406	3	INTRON	INTRON	TCERG1	ENSG00000113649.13	ENST00000296702.9:ENST00000679501.2:ENST00000394421.7:ENST00000549332.1:ENST00000506524.5:ENST00000514567.5:ENST00000514719.1:ENST00000503741.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	36	2	2.85854	3.67955	4.50056	0.015974	0.0107837	0.101453	0.0920575
chr8	129397248	129397347	4059242	0	-	0.383838	(0.378,0.408]	chr8	369574	70	INTRON	INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1:ENST00000676273.1:ENST00000667643.1:ENST00000668791.1:ENST00000663716.1:ENST00000663572.1:ENST00000676148.1:ENST00000667962.1:ENST00000674877.1:ENST00000675316.1:ENST00000674656.1:ENST00000446592.7:ENST00000667341.1:ENST00000675186.1:ENST00000652971.1:ENST00000661447.1:ENST00000674863.1:ENST00000675498.1:ENST00000675527.1:ENST00000676108.1:ENST00000657647.1:ENST00000675589.1:ENST00000675913.1:ENST00000675109.1:ENST00000671632.1:ENST00000671311.1:ENST00000676099.1:ENST00000660652.1:ENST00000675522.1:ENST00000675183.1:ENST00000658861.1:ENST00000663991.1:ENST00000675044.1:ENST00000675435.1:ENST00000674639.1:ENST00000676069.1:ENST00000675532.1:ENST00000674762.1:ENST00000523151.6:ENST00000675948.1:ENST00000665364.1:ENST00000657251.1:ENST00000675166.1:ENST00000674883.1:ENST00000675867.1:ENST00000674580.1:ENST00000675393.1:ENST00000520048.1:ENST00000674906.1:ENST00000676030.1:ENST00000670588.1:ENST00000675072.1:ENST00000664936.1:ENST00000652914.1	lncRNA	lncRNA	lncRNA	lncRNA	1	36	2	2.85854	3.67955	4.50056	0.015974	0.0107837	0.101453	0.0920575
chr12	57072387	57072487	5336785	0	-	0.44	(0.408,0.44]	chr12	510375	2	SS5_PROX	SS5_PROX:INTRON	NEMP1	ENSG00000166881.10	ENST00000300128.9:ENST00000379391.7:ENST00000554340.1:ENST00000553654.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	57	2	1.8749	3.67953	5.48416	0.0264246	5.43528e-4	0.133676	0.0215026
chr2	11340996	11341096	1068641	0	-	0.38	(0.378,0.408]	chr2	114093	529	INTRON	INTRON	ROCK2	ENSG00000134318.15	ENST00000315872.11:ENST00000261535.7:ENST00000462366.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	66	2	1.89052	3.679425	5.46833	0.0148147	7.05018e-4	0.106702	0.024224
chr22	21693126	21693225	7482743	0	+	0.515152	(0.476,0.515]	chr22	763403	4	EXON_MRNA	EXON_MRNA:INTRON	PPIL2	ENSG00000100023.20	ENST00000679795.1:ENST00000679540.1:ENST00000679580.1:ENST00000681286.1:ENST00000680061.1:ENST00000681338.1:ENST00000681956.1:ENST00000679827.1:ENST00000679534.1:ENST00000679479.1:ENST00000680393.1:ENST00000335025.12:ENST00000498109.2:ENST00000398831.8:ENST00000681394.1:ENST00000679477.1:ENST00000626352.2:ENST00000417788.5:ENST00000681791.1:ENST00000679692.1:ENST00000680962.1:ENST00000680094.1:ENST00000680434.1:ENST00000680109.1:ENST00000406385.1:ENST00000681137.1:ENST00000680860.1:ENST00000680183.1:ENST00000446951.1:ENST00000681735.1:ENST00000679564.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	57	2	1.86014	3.679405	5.49867	0.0277606	4.28561e-4	0.137011	0.0189958
chr16	29547646	29547743	6471067	0	-	0.319588	(0.28,0.32]	chr16	625235	10	INTRON	INTRON	ENSG00000288632:SMG1P2	ENSG00000288632.1:ENSG00000205534.6	ENST00000675579.1:ENST00000566127.1	lncRNA	lncRNA	lncRNA:transcribed_unprocessed_pseudogene	lncRNA:transcribed_unprocessed_pseudogene	4	176	2	3.52413	3.679395	3.83466	1.7873e-4	1.52477e-5	0.0121697	0.0029363
chr18	3005328	3005428	6945022	0	-	0.44	(0.408,0.44]	chr18	686840	226	INTRON	INTRON	LPIN2	ENSG00000101577.10	ENST00000261596.8:ENST00000677752.1	protein_coding	protein_coding	protein_coding	protein_coding	4	127	2	2.67325	3.6793050000000003	4.68536	0.00143252	1.09683e-6	0.0340925	5.99786e-4
chr5	131264666	131264765	2484642	0	+	0.585859	(0.57,1]	chr5	237114	1	INTRON	INTRON	CDC42SE2	ENSG00000158985.14	ENST00000502840.5:ENST00000511432.5:ENST00000506419.5:ENST00000395246.5:ENST00000505065.2:ENST00000504701.5:ENST00000503291.5:ENST00000360515.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	31	2	2.38391	3.679245	4.97458	0.0104374	2.67728e-4	0.0902296	0.0149989
chr3	167707489	167707589	1853774	0	-	0.49	(0.476,0.515]	chr3	186313	22	INTRON	INTRON	PDCD10	ENSG00000114209.15	ENST00000392750.7:ENST00000473645.6:ENST00000497056.6:ENST00000492396.5:ENST00000461494.5:ENST00000470131.5:ENST00000475915.6:ENST00000487947.6:ENST00000471885.5:ENST00000479121.5:ENST00000462725.6:ENST00000492139.5:ENST00000483451.5:ENST00000494502.6:ENST00000464360.5:ENST00000481136.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	36	2	3.01197	3.6792249999999997	4.34648	0.0193566	0.00633162	0.108861	0.0722266
chr19	45171293	45171393	7190184	0	-	0.43	(0.408,0.44]	chr19	727916	57	INTRON	INTRON	TRAPPC6A	ENSG00000007255.10	ENST00000006275.8:ENST00000588062.5:ENST00000585934.1:ENST00000592647.1:ENST00000587818.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	38	2	2.6542	3.67915	4.7041	0.0227514	0.00381677	0.117618	0.0562562
chr4	146395311	146395411	2256958	0	-	0.44	(0.408,0.44]	chr4	220326	690	INTRON	INTRON	SLC10A7	ENSG00000120519.16	ENST00000432059.6:ENST00000335472.12:ENST00000693222.1:ENST00000507030.5:ENST00000511315.2:ENST00000507560.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	38	2	2.6542	3.67915	4.7041	0.0227514	0.00381677	0.117618	0.0562562
chr1	38013664	38013763	74276	0	+	0.383838	(0.378,0.408]	chr1	9592	4	INTRON	INTRON	UTP11	ENSG00000183520.12	ENST00000483182.5:ENST00000373014.5:ENST00000486563.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	36	2	2.54849	3.679085	4.80968	0.0273196	0.00679828	0.136494	0.0711802
chr10	16463360	16463460	4398046	0	+	0.38	(0.378,0.408]	chr10	406031	255	INTRON	INTRON	PTER	ENSG00000165983.15	ENST00000423462.6:ENST00000378000.5:ENST00000535784.7	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	2.54849	3.679085	4.80968	0.0273196	0.00679828	0.136494	0.0711802
chr17	38298850	38298942	6605114	0	+	0.380435	(0.378,0.408]	chr17	642935	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MRPL45	ENSG00000278845.5	ENST00000619548.1:ENST00000613675.5	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	2.54849	3.679085	4.80968	0.0273196	0.00679828	0.136494	0.0711802
chr4	68327211	68327311	2154649	0	-	0.38	(0.378,0.408]	chr4	212245	26	INTRON	INTRON	YTHDC1	ENSG00000083896.13	ENST00000344157.9:ENST00000355665.7:ENST00000579690.5:ENST00000506175.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	36	2	2.54849	3.679085	4.80968	0.0273196	0.00679828	0.136494	0.0711802
chr7	1938392	1938492	3463972	0	-	0.4	(0.378,0.408]	chr7	323991	11	INTRON	INTRON	MAD1L1	ENSG00000002822.16	ENST00000406869.5:ENST00000399654.6:ENST00000402746.5:ENST00000265854.12:ENST00000450235.5:ENST00000437877.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	36	2	2.54849	3.679085	4.80968	0.0273196	0.00679828	0.136494	0.0711802
chr1	202772669	202772768	620386	0	-	0.454545	(0.44,0.476]	chr1	73643	27	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	KDM5B	ENSG00000117139.18	ENST00000367265.9:ENST00000648338.1:ENST00000649542.1:ENST00000647757.1:ENST00000367264.7:ENST00000648473.1:ENST00000650569.1:ENST00000648056.1:ENST00000649770.1:ENST00000648469.1:ENST00000650417.1:ENST00000235790.9:ENST00000650422.1:ENST00000648738.1:ENST00000648958.1:ENST00000602511.1:ENST00000650368.1:ENST00000649200.1:ENST00000648354.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	129	2	3.57755	3.679005	3.78046	3.54249e-4	5.59824e-6	0.0174886	0.00164301
chr5	134161225	134161321	2726196	0	-	0.364583	(0.35,0.378]	chr5	256487	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	SKP1	ENSG00000113558.19	ENST00000353411.11:ENST00000522552.5:ENST00000521216.5:ENST00000517691.1:ENST00000517625.5:ENST00000523966.5:ENST00000522855.5:ENST00000328392.10:ENST00000519054.5:ENST00000519321.5:ENST00000520417.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	54	2	2.04224	3.6788999999999996	5.31556	0.0363073	4.97087e-4	0.138959	0.0201536
chr14	21233852	21233952	5834807	0	-	0.3	(0.28,0.32]	chr14	554443	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	HNRNPC	ENSG00000092199.19	ENST00000336053.10:ENST00000553300.6:ENST00000554969.5:ENST00000556142.5:ENST00000554455.5:ENST00000430246.6:ENST00000553753.5:ENST00000555309.5:ENST00000555914.5:ENST00000557442.5:ENST00000556628.5:ENST00000556513.5:ENST00000555883.5:ENST00000557201.5:ENST00000556897.5:ENST00000420743.6:ENST00000554539.5:ENST00000554383.5:ENST00000555215.5:ENST00000555137.5:ENST00000554891.5:ENST00000556226.5:ENST00000555176.5:ENST00000553614.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	56	2	2.55521	3.6788800000000004	4.80255	0.0137406	0.0067419	0.0949306	0.0739405
chr11	64201386	64201485	4802199	0	+	0.414141	(0.408,0.44]	chr11	445296	7	INTRON	INTRON	STIP1	ENSG00000168439.17	ENST00000358794.9:ENST00000305218.9:ENST00000536973.5:ENST00000538945.5:ENST00000540887.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	36	2	3.02513	3.6787549999999998	4.33238	0.0218901	0.0059965	0.11491	0.0700606
chr15	87431078	87431176	6253858	0	-	0.204082	[0,0.28]	chr15	596796	7	INTRON	INTRON	ENSG00000259560	ENSG00000259560.2	ENST00000665121.1:ENST00000656130.1	lncRNA	lncRNA	lncRNA	lncRNA	2	60	2	2.41169	3.67865	4.94561	0.0150263	0.0122872	0.0994339	0.0970106
chr5	150019097	150019197	2518849	0	+	0.25	[0,0.28]	chr5	240787	4	SS5_PROX	SS5_PROX:INTRON	HMGXB3	ENSG00000113716.13	ENST00000613459.4:ENST00000503427.5:ENST00000502717.6	protein_coding	protein_coding	protein_coding	protein_coding	5	91	2	1.62448	3.67862	5.73276	0.0302032	0.00156565	0.142761	0.0360583
chr17	67361761	67361846	6826097	0	-	0.411765	(0.408,0.44]	chr17	674626	1	INTRON	INTRON	PSMD12	ENSG00000197170.10	ENST00000356126.8:ENST00000357146.4:ENST00000584008.5:ENST00000584289.5:ENST00000581618.1:ENST00000579365.5:ENST00000578015.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	51	2	2.11447	3.67857	5.24267	0.0285207	4.83767e-4	0.12666	0.0199261
chr9	96595121	96595220	4296450	0	-	0.434343	(0.408,0.44]	chr9	395079	280	INTRON	INTRON	CDC14B	ENSG00000081377.17	ENST00000474602.5:ENST00000412285.6:ENST00000375241.6:ENST00000375240.7:ENST00000463569.5:ENST00000415608.1:ENST00000496750.5:ENST00000463547.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	51	2	2.11447	3.67857	5.24267	0.0285207	4.83767e-4	0.12666	0.0199261
chr12	65186182	65186282	5157279	0	+	0.3	(0.28,0.32]	chr12	488236	144	INTRON	INTRON	LEMD3	ENSG00000174106.3	ENST00000308330.3:ENST00000541171.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	55	2	1.96475	3.6785500000000004	5.39235	0.0428385	0.0024844	0.162255	0.0446195
chr7	132832006	132832105	3643380	0	-	0.282828	(0.28,0.32]	chr7	338830	160	INTRON	INTRON	CHCHD3	ENSG00000106554.13	ENST00000262570.10:ENST00000448878.6:ENST00000496427.5:ENST00000423635.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	55	2	1.96475	3.6785500000000004	5.39235	0.0428385	0.0024844	0.162255	0.0446195
chr12	116100543	116100642	5423773	0	-	0.393939	(0.378,0.408]	chr12	518251	34	INTRON	INTRON	MED13L	ENSG00000123066.9	ENST00000281928.9:ENST00000650226.1:ENST00000548743.2:ENST00000647567.1	protein_coding	protein_coding	protein_coding	protein_coding	4	74	2	2.54736	3.67852	4.80968	0.00679828	8.3709e-4	0.0711802	0.0263691
chr1	15517709	15517809	380688	0	-	0.51	(0.476,0.515]	chr1	44644	2	SS5_PROX	SS5_PROX:INTRON	CASP9	ENSG00000132906.18	ENST00000546424.5:ENST00000333868.10:ENST00000348549.9:ENST00000400777.7:ENST00000375890.8:ENST00000474305.2:ENST00000447522.5:ENST00000440484.1:ENST00000546969.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	36	2	2.38442	3.6784749999999997	4.97253	0.0417472	0.00311573	0.161736	0.0498063
chr1	19428345	19428445	388336	0	-	0.49	(0.476,0.515]	chr1	46387	82	INTRON	INTRON	CAPZB	ENSG00000077549.19	ENST00000264202.8:ENST00000264203.7:ENST00000375142.5:ENST00000482808.2:ENST00000674449.1:ENST00000674390.1:ENST00000375144.6:ENST00000674432.1:ENST00000433834.5:ENST00000459967.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	36	2	2.38442	3.6784749999999997	4.97253	0.0417472	0.00311573	0.161736	0.0498063
chr1	150305147	150305247	221302	0	+	0.48	(0.476,0.515]	chr1	24942	103	INTRON	INTRON	MRPS21	ENSG00000266472.6	ENST00000614145.5:ENST00000581066.2	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	2.38442	3.6784749999999997	4.97253	0.0417472	0.00311573	0.161736	0.0498063
chr13	45369600	45369700	5480228	0	+	0.49	(0.476,0.515]	chr13	525029	4	SS3_PROX	SS3_PROX:INTRON	TPT1-AS1	ENSG00000170919.16	ENST00000517509.5:ENST00000658870.1:ENST00000653307.1:ENST00000661180.1:ENST00000655984.1:ENST00000654229.1:ENST00000519454.6:ENST00000412946.6:ENST00000665586.1:ENST00000520590.5:ENST00000521336.6:ENST00000655666.1:ENST00000669281.1:ENST00000520622.6:ENST00000657761.1:ENST00000668209.1:ENST00000659577.1:ENST00000523506.6:ENST00000661291.1:ENST00000655385.1:ENST00000652823.1:ENST00000524062.5:ENST00000655124.1:ENST00000662212.1:ENST00000522859.5:ENST00000664881.1:ENST00000669627.1:ENST00000520924.5:ENST00000521507.5:ENST00000523445.5:ENST00000520310.6:ENST00000667948.1:ENST00000668256.1:ENST00000654626.1:ENST00000660680.1:ENST00000665079.1:ENST00000662614.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	1	36	2	2.38442	3.6784749999999997	4.97253	0.0417472	0.00311573	0.161736	0.0498063
chr19	20655865	20655964	7158088	0	-	0.515152	(0.476,0.515]	chr19	723638	91	INTRON	INTRON	ZNF626	ENSG00000188171.17	ENST00000601440.6:ENST00000595405.1:ENST00000291750.6	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	2.38442	3.6784749999999997	4.97253	0.0417472	0.00311573	0.161736	0.0498063
chr7	149609103	149609203	3672467	0	-	0.44	(0.408,0.44]	chr7	340834	451	INTRON	INTRON	ZNF767P	ENSG00000133624.14	ENST00000463567.5:ENST00000472212.5:ENST00000684939.1:ENST00000690388.1:ENST00000486492.5:ENST00000481762.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	2	78	2	3.52471	3.67844	3.83217	0.00112428	1.79883e-4	0.0306963	0.0116696
chr16	22442031	22442131	6321987	0	+	0.28	[0,0.28]	chr16	605299	39	INTRON	INTRON	SMG1P1	ENSG00000237296.10	ENST00000446662.5:ENST00000381231.5:ENST00000309865.11:ENST00000691795.1:ENST00000308347.10:ENST00000687936.1:ENST00000691423.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	1	48	2	2.44242	3.67828	4.91414	0.0491024	0.0064519	0.155269	0.0730725
chr2	69924362	69924462	805601	0	+	0.32	(0.28,0.32]	chr2	89920	22	INTRON	INTRON	MXD1	ENSG00000059728.11	ENST00000435990.5:ENST00000540449.5:ENST00000264444.7:ENST00000409442.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	60	2	2.84671	3.67826	4.50981	0.0275554	0.00216662	0.123904	0.0434015
chr7	99465211	99465310	3583834	0	-	0.424242	(0.408,0.44]	chr7	333845	46	INTRON	INTRON	ATP5MF-PTCD1:PTCD1:ATP5MF	ENSG00000248919.7:ENSG00000106246.18:ENSG00000241468.8	ENST00000413834.5:ENST00000430982.1:ENST00000437572.1:ENST00000451138.1:ENST00000466753.1:ENST00000414062.5:ENST00000449683.5:ENST00000292475.8:ENST00000359832.8:ENST00000488775.5:ENST00000394186.3:ENST00000523680.1:ENST00000485011.1:ENST00000524321.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	130	2	3.19999	3.67821	4.15643	1.0559e-4	3.06341e-5	0.00920724	0.00441979
chr16	89522198	89522296	6420481	0	+	0.27551	[0,0.28]	chr16	616216	1	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:INTRON	SPG7	ENSG00000197912.16	ENST00000647079.1:ENST00000646303.1:ENST00000643649.1:ENST00000643307.1:ENST00000566371.6:ENST00000644498.1:ENST00000645897.1:ENST00000643668.1:ENST00000644225.1:ENST00000645818.2:ENST00000645977.1:ENST00000645063.1:ENST00000646263.1:ENST00000643724.1:ENST00000644781.1:ENST00000644901.1:ENST00000645042.1:ENST00000646531.1:ENST00000646930.1:ENST00000642436.1:ENST00000644210.1:ENST00000564047.2:ENST00000646589.1:ENST00000268704.7:ENST00000646826.1:ENST00000646716.1:ENST00000643345.1:ENST00000341316.6:ENST00000645533.1:ENST00000646958.1:ENST00000642371.1:ENST00000643105.1:ENST00000645354.1:ENST00000643957.1:ENST00000642334.1:ENST00000647227.1:ENST00000562775.2:ENST00000568151.1:ENST00000646445.1:ENST00000564409.2:ENST00000643954.1:ENST00000646399.1:ENST00000644671.1:ENST00000643178.1:ENST00000611189.2:ENST00000644748.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	60	2	1.84147	3.678175	5.51488	0.0610416	0.00314116	0.193277	0.0500389
chr6	98906170	98906269	3165165	0	-	0.353535	(0.35,0.378]	chr6	295199	1	INTRON	INTRON	FBXL4	ENSG00000112234.9	ENST00000369244.7:ENST00000229971.2	protein_coding	protein_coding	protein_coding	protein_coding	1	40	2	3.26794	3.67805	4.08816	0.046021	0.00257067	0.149888	0.0466761
chr22	23211142	23211242	7483513	0	+	0.41	(0.408,0.44]	chr22	763541	114	INTRON	INTRON	BCR	ENSG00000186716.21	ENST00000479188.5:ENST00000359540.7:ENST00000305877.13:ENST00000463770.5:ENST00000487679.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	64	2	2.23023	3.677955	5.12568	0.0087201	7.90919e-4	0.0788605	0.0258324
chr16	3133324	3133420	6433246	0	-	0.364583	(0.35,0.378]	chr16	619150	21	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	ZNF213-AS1	ENSG00000263072.9	ENST00000674022.1:ENST00000673666.1:ENST00000572691.2:ENST00000664624.1:ENST00000670666.1:ENST00000653667.1:ENST00000668823.1:ENST00000657201.1:ENST00000657996.1:ENST00000576490.2:ENST00000692817.1:ENST00000668778.1:ENST00000654387.1:ENST00000686529.1:ENST00000659227.1:ENST00000691772.1:ENST00000685085.1:ENST00000686892.1:ENST00000654482.1:ENST00000571963.5:ENST00000573447.2:ENST00000571449.2:ENST00000652946.1:ENST00000658602.1:ENST00000671396.1:ENST00000576590.2:ENST00000575089.2	lncRNA	lncRNA	lncRNA	lncRNA	2	54	2	2.09331	3.67791	5.26251	0.0315717	6.20882e-4	0.13151	0.0223951
chr1	162567641	162567741	238379	0	+	0.28	[0,0.28]	chr1	28704	9	INTRON	INTRON	UAP1	ENSG00000117143.14	ENST00000367925.6:ENST00000367926.9	protein_coding	protein_coding	protein_coding	protein_coding	2	59	2	2.24546	3.6778950000000004	5.11033	0.0206502	0.00991388	0.122348	0.0838372
chr19	40345961	40346059	7184046	0	-	0.520408	(0.515,0.57]	chr19	726625	23	INTRON	INTRON	C19orf47	ENSG00000160392.14	ENST00000582783.5:ENST00000683109.1:ENST00000392035.6:ENST00000582006.5:ENST00000580977.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	68	2	3.35609	3.677885	3.99968	0.00174131	5.71792e-5	0.0375363	0.00617842
chr9	124986257	124986357	4350396	0	-	0.33	(0.32,0.35]	chr9	399456	97	INTRON	INTRON	SCAI	ENSG00000173611.18	ENST00000336505.11:ENST00000373549.8:ENST00000477186.5:ENST00000467917.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	41	2	3.18392	3.6778649999999997	4.17181	0.04531	0.00379806	0.149888	0.0562562
chr22	21691284	21691384	7482722	0	+	0.31	(0.28,0.32]	chr22	763396	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	PPIL2	ENSG00000100023.20	ENST00000679795.1:ENST00000679540.1:ENST00000679580.1:ENST00000681286.1:ENST00000680061.1:ENST00000681338.1:ENST00000681956.1:ENST00000679827.1:ENST00000679534.1:ENST00000679479.1:ENST00000680393.1:ENST00000335025.12:ENST00000498109.2:ENST00000398831.8:ENST00000681394.1:ENST00000679477.1:ENST00000626352.2:ENST00000417788.5:ENST00000681791.1:ENST00000679692.1:ENST00000680962.1:ENST00000680094.1:ENST00000680434.1:ENST00000680109.1:ENST00000406385.1:ENST00000681137.1:ENST00000680860.1:ENST00000680183.1:ENST00000446951.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	75	2	1.68411	3.6778399999999998	5.67157	0.0323543	9.48957e-4	0.145026	0.0281755
chr11	33150144	33150243	4940866	0	-	0.424242	(0.408,0.44]	chr11	462878	48	INTRON	INTRON	CSTF3	ENSG00000176102.13	ENST00000323959.9:ENST00000524827.6:ENST00000526480.1:ENST00000438862.6:ENST00000431742.2:ENST00000524556.1:ENST00000524775.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	36	2	2.3975	3.677835	4.95817	0.040266	0.00372419	0.161534	0.0535094
chr11	88337172	88337262	5016059	0	-	0.411111	(0.408,0.44]	chr11	473148	1	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	CTSC	ENSG00000109861.17	ENST00000678554.1:ENST00000679224.1:ENST00000677661.1:ENST00000678506.1:ENST00000676612.1:ENST00000677802.1:ENST00000227266.10:ENST00000678395.1:ENST00000533897.2:ENST00000677208.1:ENST00000678520.1:ENST00000678464.1:ENST00000678915.1:ENST00000527018.6:ENST00000679199.1:ENST00000524463.6:ENST00000679032.1:ENST00000528020.2:ENST00000529974.2:ENST00000533865.6:ENST00000677468.1:ENST00000677877.1:ENST00000393301.5:ENST00000677796.1:ENST00000677976.1:ENST00000677106.1:ENST00000534131.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	36	2	2.3975	3.677835	4.95817	0.040266	0.00372419	0.161534	0.0535094
chr8	140610187	140610287	4076312	0	-	0.44	(0.408,0.44]	chr8	370285	44	INTRON	INTRON	AGO2	ENSG00000123908.12	ENST00000220592.10:ENST00000519980.5:ENST00000523609.5:ENST00000517293.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	36	2	2.3975	3.677835	4.95817	0.040266	0.00372419	0.161534	0.0535094
chr15	94862456	94862556	6105253	0	+	0.32	(0.28,0.32]	chr15	581666	52	INTRON	INTRON	ENSG00000277654	ENSG00000277654.6	ENST00000618611.4:ENST00000648065.1:ENST00000618377.1:ENST00000621842.4:ENST00000615751.4:ENST00000614581.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	1	44	2	2.32871	3.677685	5.02666	0.0581621	0.0027935	0.167723	0.0488769
chr5	132913769	132913869	2724764	0	-	0.29	(0.28,0.32]	chr5	256321	90	INTRON	INTRON	AFF4	ENSG00000072364.13	ENST00000265343.10:ENST00000378595.7:ENST00000425658.1:ENST00000378593.6:ENST00000477369.5:ENST00000491831.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	44	2	2.32871	3.677685	5.02666	0.0581621	0.0027935	0.167723	0.0488769
chr7	100333180	100333279	3586751	0	-	0.282828	(0.28,0.32]	chr7	334366	2	INTRON	INTRON	PMS2P1	ENSG00000078319.11	ENST00000685724.1:ENST00000692351.1:ENST00000685541.1:ENST00000676200.2:ENST00000675162.2:ENST00000686838.1:ENST00000676241.1:ENST00000691424.1:ENST00000689817.1:ENST00000675610.2:ENST00000685901.1:ENST00000687177.1:ENST00000686797.1:ENST00000686203.1:ENST00000687616.1:ENST00000689267.1:ENST00000691905.1:ENST00000688544.1:ENST00000692261.1:ENST00000693192.1:ENST00000693215.1:ENST00000691707.1:ENST00000691275.1:ENST00000692687.1:ENST00000689609.1:ENST00000685852.1:ENST00000691910.1:ENST00000676204.1:ENST00000689000.1:ENST00000693042.1:ENST00000690446.1:ENST00000676274.2:ENST00000685473.1:ENST00000693010.1:ENST00000687801.1:ENST00000689447.1:ENST00000674842.2:ENST00000688104.1:ENST00000686890.1:ENST00000675639.2:ENST00000693302.1:ENST00000676155.2:ENST00000691428.1:ENST00000691046.1:ENST00000691816.1:ENST00000685670.1:ENST00000693490.1:ENST00000685700.1:ENST00000692947.1:ENST00000689907.1:ENST00000691110.1:ENST00000685499.1:ENST00000689019.1:ENST00000689719.1:ENST00000690988.1:ENST00000687713.1:ENST00000691247.1:ENST00000685805.1:ENST00000685342.1:ENST00000691107.1:ENST00000674972.2:ENST00000431037.4:ENST00000686569.1:ENST00000692675.1:ENST00000686594.1:ENST00000692231.1:ENST00000690914.1:ENST00000685607.1:ENST00000687053.1:ENST00000689538.1:ENST00000691660.1:ENST00000675620.2:ENST00000687026.1:ENST00000692752.1:ENST00000675640.2:ENST00000686825.1:ENST00000691842.1:ENST00000676269.2:ENST00000676109.1:ENST00000675486.2:ENST00000693338.1:ENST00000690455.1:ENST00000688879.1:ENST00000692066.1:ENST00000674747.1:ENST00000692106.1:ENST00000691365.1:ENST00000692535.1:ENST00000686263.1:ENST00000675836.2:ENST00000686768.1:ENST00000688256.1:ENST00000686938.1:ENST00000675679.2:ENST00000675106.2:ENST00000674524.2:ENST00000688316.1:ENST00000687932.1:ENST00000692575.1:ENST00000688181.1:ENST00000676198.1:ENST00000675889.1:ENST00000675918.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	1	44	2	2.32871	3.677685	5.02666	0.0581621	0.0027935	0.167723	0.0488769
chr7	77590504	77590602	3342555	0	+	0.418367	(0.408,0.44]	chr7	311345	46	INTRON	INTRON	PTPN12	ENSG00000127947.16	ENST00000248594.11:ENST00000433369.6:ENST00000415482.6:ENST00000435495.6:ENST00000418110.5:ENST00000522115.6:ENST00000447995.2:ENST00000481154.1:ENST00000494248.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	142	2	3.2253	3.677655	4.13001	4.07735e-4	1.05444e-6	0.0185763	5.87735e-4
chr3	48180320	48180420	1687749	0	-	0.32	(0.28,0.32]	chr3	172331	2	SS5_PROX	SS5_PROX:INTRON	CDC25A	ENSG00000164045.12	ENST00000302506.8:ENST00000351231.7:ENST00000443342.5	protein_coding	protein_coding	protein_coding	protein_coding	3	135	2	3.03222	3.6776350000000004	4.32305	9.72587e-4	5.62686e-5	0.0287313	0.00655354
chr5	138180633	138180729	2494555	0	+	0.4375	(0.408,0.44]	chr5	238327	4	INTRON	INTRON	KIF20A	ENSG00000112984.12	ENST00000513276.5:ENST00000394894.8:ENST00000508792.5:ENST00000511638.5:ENST00000503417.1:ENST00000504621.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	168	2	3.1276	3.67763	4.22766	1.55505e-4	5.2597800000000005e-07	0.0113474	3.90753e-4
chr1	155549572	155549672	562764	0	-	0.37	(0.35,0.378]	chr1	67117	276	INTRON	INTRON	ASH1L	ENSG00000116539.14	ENST00000676814.1:ENST00000392403.8:ENST00000368346.7:ENST00000677213.1:ENST00000678117.1:ENST00000679097.1:ENST00000679333.1:ENST00000679133.1:ENST00000548830.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	50	2	2.49643	3.677565	4.8587	0.00752974	0.00695662	0.0773151	0.0718189
chr3	33679983	33680083	1653621	0	-	0.37	(0.35,0.378]	chr3	169658	161	INTRON	INTRON	CLASP2	ENSG00000163539.18	ENST00000399362.8:ENST00000682230.1:ENST00000468888.6:ENST00000359576.9	protein_coding	protein_coding	protein_coding	protein_coding	2	50	2	2.49643	3.677565	4.8587	0.00752974	0.00695662	0.0773151	0.0718189
chr6	13706353	13706452	3059172	0	-	0.373737	(0.35,0.378]	chr6	284548	91	INTRON	INTRON	RANBP9	ENSG00000010017.13	ENST00000011619.6	protein_coding	protein_coding	protein_coding	protein_coding	2	50	2	2.49643	3.677565	4.8587	0.00752974	0.00695662	0.0773151	0.0718189
chr16	74596471	74596571	6525226	0	-	0.42	(0.408,0.44]	chr16	631842	333	INTRON	INTRON	GLG1	ENSG00000090863.12	ENST00000205061.9:ENST00000422840.7:ENST00000447066.6:ENST00000562090.5:ENST00000567951.5:ENST00000627032.2:ENST00000565260.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	65	2	2.00961	3.6775450000000003	5.34548	0.00931007	9.40657e-4	0.0855292	0.0280776
chr4	55421827	55421926	1960858	0	+	0.323232	(0.32,0.35]	chr4	196577	33	INTRON	INTRON	TMEM165	ENSG00000134851.13	ENST00000381334.10:ENST00000506198.5:ENST00000508404.5:ENST00000514904.5:ENST00000508561.5:ENST00000608091.1:ENST00000509575.1:ENST00000506103.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	111	2	1.24446	3.67748	6.1105	0.0403835	9.43645e-5	0.161534	0.00865219
chr2	74204917	74205016	813291	0	+	0.474747	(0.44,0.476]	chr2	90925	36	EXON_MRNA	EXON_MRNA:INTRON	MTHFD2	ENSG00000065911.13	ENST00000677997.1:ENST00000677170.1:ENST00000678684.1:ENST00000409804.5:ENST00000489041.2:ENST00000470592.5:ENST00000678955.1:ENST00000394053.7:ENST00000677377.1:ENST00000679055.1:ENST00000678340.1:ENST00000477455.5:ENST00000409601.1:ENST00000678228.1:ENST00000488086.1:ENST00000462026.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	47	2	2.39003	3.6774699999999996	4.96491	0.0106488	0.0034249	0.0915714	0.0517761
chr3	28275147	28275247	1390883	0	+	0.37	(0.35,0.378]	chr3	145643	114	INTRON	INTRON	CMC1	ENSG00000187118.14	ENST00000477739.1:ENST00000423894.5:ENST00000466830.6:ENST00000334841.10:ENST00000418849.2:ENST00000396610.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	51	2	2.63527	3.6773999999999996	4.71953	0.0103314	0.00443588	0.0850389	0.061054
chr19	28520017	28520117	7166295	0	-	0.51	(0.476,0.515]	chr19	724189	518	INTRON	INTRON	ENSG00000283403:ENSG00000267243	ENSG00000283403.1:ENSG00000267243.6	ENST00000592347.5:ENST00000593065.5	lncRNA	lncRNA	lncRNA	lncRNA	5	72	2	1.61324	3.677395	5.74155	0.026684	1.47804e-4	0.134419	0.0111067
chr2	144495909	144496006	1241564	0	-	0.443299	(0.44,0.476]	chr2	131733	18	EXON_MRNA	EXON_MRNA:INTRON	ZEB2:ENSG00000279166	ENSG00000169554.23:ENSG00000279166.1	ENST00000636471.1:ENST00000627532.3:ENST00000638128.1:ENST00000637304.1:ENST00000636179.1:ENST00000419938.5:ENST00000409487.7:ENST00000636732.2:ENST00000636026.2:ENST00000675069.1:ENST00000689298.1:ENST00000539609.7:ENST00000558170.6:ENST00000303660.8:ENST00000427902.5:ENST00000637267.2:ENST00000392861.6:ENST00000431672.4:ENST00000409211.5:ENST00000465308.5:ENST00000434448.5:ENST00000472146.5:ENST00000461784.3:ENST00000476394.5:ENST00000637591.2:ENST00000479735.1:ENST00000453352.5:ENST00000435831.5:ENST00000444559.5:ENST00000630572.2:ENST00000484313.3:ENST00000623674.1	protein_coding	protein_coding	protein_coding:TEC	protein_coding:retained_intron:nonsense_mediated_decay:TEC:processed_transcript	1	39	2	2.9195	3.677375	4.43525	0.0102021	0.00897296	0.0850389	0.0849778
chr3	197221470	197221570	1902736	0	-	0.45	(0.44,0.476]	chr3	190649	265	INTRON	INTRON	DLG1	ENSG00000075711.21	ENST00000667157.1:ENST00000346964.6:ENST00000656428.1:ENST00000663148.1:ENST00000655488.1:ENST00000357674.9:ENST00000671185.1:ENST00000658701.1:ENST00000667104.1:ENST00000661336.1:ENST00000669565.1:ENST00000670455.1:ENST00000656087.1:ENST00000670366.1:ENST00000653583.1:ENST00000661453.1:ENST00000665728.1:ENST00000664564.1:ENST00000660432.1:ENST00000660898.1:ENST00000657381.1:ENST00000659221.1:ENST00000654737.1:ENST00000669332.1:ENST00000659716.1:ENST00000664991.1:ENST00000419354.5:ENST00000661440.1:ENST00000667971.1:ENST00000670935.1:ENST00000668578.1:ENST00000666007.1:ENST00000661229.1:ENST00000661013.1:ENST00000436682.6:ENST00000662727.1:ENST00000422288.6:ENST00000448528.6:ENST00000656944.1:ENST00000392382.6:ENST00000450955.5:ENST00000658155.1:ENST00000669714.1:ENST00000654733.1:ENST00000469073.2:ENST00000419227.5:ENST00000392381.7:ENST00000471733.5:ENST00000419553.6:ENST00000661808.1:ENST00000453607.5:ENST00000456699.6:ENST00000392380.6:ENST00000485409.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	39	2	2.9195	3.677375	4.43525	0.0102021	0.00897296	0.0850389	0.0849778
chr7	132904073	132904173	3644103	0	-	0.49	(0.476,0.515]	chr7	338848	167	INTRON	INTRON	CHCHD3	ENSG00000106554.13	ENST00000262570.10:ENST00000448878.6:ENST00000496427.5:ENST00000423635.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	47	2	2.32001	3.677335	5.03466	0.0136217	0.00252065	0.101682	0.0446195
chr13	95234309	95234409	5639201	0	-	0.36	(0.35,0.378]	chr13	537152	3	SS5_PROX	SS5_PROX:INTRON	ABCC4	ENSG00000125257.16	ENST00000645237.2:ENST00000643051.1:ENST00000643842.1:ENST00000646439.1:ENST00000643816.1:ENST00000536256.3:ENST00000643556.1:ENST00000629385.1:ENST00000642524.1:ENST00000645532.1:ENST00000644471.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	62	2	2.43108	3.677315	4.92355	0.00573514	0.00345501	0.0657377	0.0539802
chr12	31325823	31325923	5302855	0	-	0.5	(0.476,0.515]	chr12	504677	4	SS5_PROX	SS5_PROX:INTRON	SINHCAF	ENSG00000139146.14	ENST00000337682.9:ENST00000539409.5:ENST00000542983.1:ENST00000539004.5:ENST00000536836.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	47	2	2.26034	3.6772849999999995	5.09423	0.0166235	0.00204588	0.110511	0.04086
chr12	45855861	45855960	5123994	0	+	0.434343	(0.408,0.44]	chr12	483375	26	INTRON	INTRON	ARID2	ENSG00000189079.17	ENST00000334344.11:ENST00000422737.6:ENST00000479608.5:ENST00000444670.5:ENST00000457135.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	47	2	2.27464	3.6772350000000005	5.07983	0.0158016	0.00247652	0.109464	0.0446195
chr1	12442564	12442664	30435	0	+	0.42	(0.408,0.44]	chr1	3762	254	INTRON	INTRON	VPS13D	ENSG00000048707.15	ENST00000620676.6:ENST00000613099.4:ENST00000011700.10:ENST00000646411.1:ENST00000543710.5:ENST00000645371.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	48	2	2.60048	3.67723	4.75398	0.00703931	0.00484324	0.0718189	0.0640618
chr15	93010015	93010111	6104849	0	+	0.4375	(0.408,0.44]	chr15	581631	3	INTRON	INTRON	CHD2	ENSG00000173575.22	ENST00000626874.2:ENST00000394196.9:ENST00000625662.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	48	2	2.60048	3.67723	4.75398	0.00703931	0.00484324	0.0718189	0.0640618
chr7	66754388	66754488	3325612	0	+	0.41	(0.408,0.44]	chr7	309233	132	INTRON	INTRON	RABGEF1	ENSG00000154710.18	ENST00000607882.5:ENST00000284957.9:ENST00000450873.6:ENST00000442563.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	48	2	2.60048	3.67723	4.75398	0.00703931	0.00484324	0.0718189	0.0640618
chr9	133364478	133364565	4370327	0	-	0.482759	(0.476,0.515]	chr9	402175	2	SS5_PROX	SS5_PROX:INTRON	SURF4	ENSG00000148248.14	ENST00000545297.5:ENST00000613129.4:ENST00000618229.4:ENST00000371989.8:ENST00000485435.6:ENST00000465565.1:ENST00000467910.5:ENST00000371991.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	48	2	2.58615	3.67721	4.76827	0.00600704	0.00515536	0.0674604	0.0650394
chr1	156337340	156337418	566709	0	-	0.5	(0.476,0.515]	chr1	68040	1	SS3_PROX	SS3_PROX:SS5_PROX:INTRON	CCT3	ENSG00000163468.15	ENST00000295688.8:ENST00000368258.7:ENST00000368259.6:ENST00000368262.7:ENST00000472765.6:ENST00000413555.5:ENST00000496684.6:ENST00000533194.5:ENST00000463132.5:ENST00000446905.5:ENST00000478640.6:ENST00000415548.1:ENST00000368256.3:ENST00000489870.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	103	2	3.27004	3.6771949999999998	4.08435	2.20887e-4	7.63877e-5	0.0130309	0.0078038
chr14	31012047	31012147	5857730	0	-	0.41	(0.408,0.44]	chr14	556508	477	INTRON	INTRON	STRN3	ENSG00000196792.12	ENST00000355683.9:ENST00000357479.10:ENST00000555358.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	86	2	1.74367	3.677175	5.61068	0.00902611	3.21002e-4	0.0851577	0.0165409
chr12	878761	878861	5057455	0	+	0.37	(0.35,0.378]	chr12	477492	4	SS5_PROX	SS5_PROX:INTRON	WNK1	ENSG00000060237.19	ENST00000315939.11:ENST00000340908.9:ENST00000535572.5:ENST00000537687.5:ENST00000530271.6:ENST00000675631.1:ENST00000676347.1:ENST00000545285.5:ENST00000535698.1:ENST00000674810.1:ENST00000675236.1:ENST00000542543.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	50	2	2.04358	3.67708	5.31058	0.0329533	0.00160599	0.145171	0.0364977
chr9	137747098	137747194	4224781	0	+	0.364583	(0.35,0.378]	chr9	388258	17	UTR3	UTR3:EXON_MRNA:INTRON	EHMT1	ENSG00000181090.21	ENST00000462484.5:ENST00000371394.6:ENST00000460843.6:ENST00000629335.2:ENST00000636027.1:ENST00000637161.1:ENST00000637261.1:ENST00000637977.1:ENST00000626066.2:ENST00000638071.1:ENST00000495657.5:ENST00000637318.1:ENST00000640639.1:ENST00000629808.2:ENST00000462942.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	50	2	2.04358	3.67708	5.31058	0.0329533	0.00160599	0.145171	0.0364977
chr21	39253266	39253365	7464922	0	-	0.373737	(0.35,0.378]	chr21	760483	20	INTRON	INTRON	BRWD1	ENSG00000185658.14	ENST00000333229.6:ENST00000342449.8:ENST00000446924.5:ENST00000380800.7:ENST00000430093.5:ENST00000445245.5:ENST00000445668.5:ENST00000412604.1:ENST00000455867.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	55	2	1.75561	3.67704	5.59847	0.0739399	1.39739e-4	0.190914	0.0101825
chr14	22811600	22811700	5841140	0	-	0.5	(0.476,0.515]	chr14	555088	312	INTRON	INTRON	SLC7A7	ENSG00000155465.20	ENST00000555702.5:ENST00000285850.11:ENST00000674313.1:ENST00000556287.5:ENST00000397532.9:ENST00000397529.6:ENST00000397528.8:ENST00000554517.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	38	2	2.23335	3.677035	5.12072	0.0634557	8.42139e-4	0.177047	0.0263691
chr19	9424123	9424223	7132449	0	-	0.53	(0.515,0.57]	chr19	718745	35	INTRON	INTRON	ZNF266	ENSG00000174652.20	ENST00000592904.7:ENST00000588221.5:ENST00000588933.5:ENST00000590306.5:ENST00000651268.1:ENST00000592292.5	protein_coding	protein_coding	protein_coding	protein_coding	2	43	2	2.51561	3.6766250000000005	4.83764	0.00635044	0.00279527	0.0723103	0.0469265
chr10	92640400	92640499	4491172	0	+	0.434343	(0.408,0.44]	chr10	413632	1	INTRON	INTRON	KIF11	ENSG00000138160.7	ENST00000676757.1:ENST00000676647.1:ENST00000260731.5:ENST00000676621.1:ENST00000677720.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	78	2	3.59556	3.676555	3.75755	8.33275e-4	2.62433e-4	0.0266389	0.0143317
chr14	32122282	32122382	5681739	0	+	0.33	(0.32,0.35]	chr14	541053	46	INTRON	INTRON	ARHGAP5	ENSG00000100852.14	ENST00000556611.5:ENST00000539826.6:ENST00000396582.6:ENST00000345122.8:ENST00000433497.5:ENST00000554090.1:ENST00000557643.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	42	2	2.23182	3.676405	5.12099	0.068598	0.00143632	0.184298	0.0347139
chr17	75391960	75392059	6837662	0	-	0.343434	(0.32,0.35]	chr17	675720	38	INTRON	INTRON	GRB2	ENSG00000177885.15	ENST00000316615.9:ENST00000316804.10:ENST00000392562.5:ENST00000392564.5:ENST00000392563.5:ENST00000648046.1:ENST00000578961.5:ENST00000582582.1:ENST00000583912.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	42	2	2.23182	3.676405	5.12099	0.068598	0.00143632	0.184298	0.0347139
chr2	20261349	20261445	1075871	0	-	0.333333	(0.32,0.35]	chr2	114954	5	INTRON	INTRON	PUM2	ENSG00000055917.16	ENST00000338086.9:ENST00000361078.7:ENST00000440577.5	protein_coding	protein_coding	protein_coding	protein_coding	1	42	2	2.23182	3.676405	5.12099	0.068598	0.00143632	0.184298	0.0347139
chr2	161344622	161344721	901474	0	+	0.333333	(0.32,0.35]	chr2	99704	254	INTRON	INTRON	PSMD14	ENSG00000115233.12	ENST00000409682.8:ENST00000437630.1	protein_coding	protein_coding	protein_coding	protein_coding	1	42	2	2.23182	3.676405	5.12099	0.068598	0.00143632	0.184298	0.0347139
chr1	245804941	245805041	673671	0	-	0.37	(0.35,0.378]	chr1	79663	161	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000366517.5:ENST00000366516.5:ENST00000490107.6:ENST00000470510.5:ENST00000483072.5:ENST00000490322.1:ENST00000493441.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	40	2	2.32443	3.676375	5.02832	0.0544216	0.00156444	0.164972	0.0365263
chr11	3882710	3882810	4723734	0	+	0.37	(0.35,0.378]	chr11	437130	141	INTRON	INTRON	STIM1	ENSG00000167323.12	ENST00000525403.5:ENST00000526596.2:ENST00000300737.8:ENST00000616714.4:ENST00000527651.5:ENST00000532610.5:ENST00000532919.5:ENST00000530554.5	protein_coding	protein_coding	protein_coding	protein_coding	1	40	2	2.32443	3.676375	5.02832	0.0544216	0.00156444	0.164972	0.0365263
chr21	34107652	34107751	7401436	0	+	0.343434	(0.32,0.35]	chr21	753975	15	INTRON	INTRON	MRPS6	ENSG00000243927.6	ENST00000488492.5:ENST00000477091.5:ENST00000399312.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	40	2	3.07975	3.676375	4.273	0.0368357	0.00554235	0.138959	0.0674105
chr3	105840069	105840169	1760825	0	-	0.35	(0.32,0.35]	chr3	178568	2	INTRON	INTRON	CBLB	ENSG00000114423.23	ENST00000645759.1:ENST00000394030.8:ENST00000646499.1:ENST00000645425.1:ENST00000646825.1:ENST00000643322.1:ENST00000403724.5:ENST00000405772.5:ENST00000447441.6:ENST00000643403.1:ENST00000438603.6:ENST00000443752.2:ENST00000643192.1:ENST00000642907.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	40	2	3.07975	3.676375	4.273	0.0368357	0.00554235	0.138959	0.0674105
chr9	19234926	19235026	4104888	0	+	0.36	(0.35,0.378]	chr9	373894	37	INTRON	INTRON	DENND4C	ENSG00000137145.21	ENST00000602925.5:ENST00000434457.7:ENST00000602708.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	40	2	2.32443	3.676375	5.02832	0.0544216	0.00156444	0.164972	0.0365263
chr1	182844033	182844133	273024	0	+	0.51	(0.476,0.515]	chr1	31871	2	INTRON	INTRON	DHX9	ENSG00000135829.17	ENST00000367549.4:ENST00000483416.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	38	2	2.82673	3.6763649999999997	4.526	0.0134403	0.00699701	0.0946278	0.0754576
chr12	112487129	112487227	5230495	0	+	0.479592	(0.476,0.515]	chr12	495903	1	INTRON	INTRON	PTPN11	ENSG00000179295.19	ENST00000688597.1:ENST00000692624.1:ENST00000685487.1:ENST00000690210.1:ENST00000639857.2:ENST00000687906.1:ENST00000351677.7:ENST00000635625.1:ENST00000635652.1:ENST00000690472.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	38	2	2.82673	3.6763649999999997	4.526	0.0134403	0.00699701	0.0946278	0.0754576
chr5	55329169	55329255	2355302	0	+	0.395349	(0.378,0.408]	chr5	227149	4	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MTREX	ENSG00000039123.16	ENST00000230640.10:ENST00000506750.5:ENST00000503165.5:ENST00000504997.1:ENST00000505565.5:ENST00000502953.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	130	2	2.78373	3.6762749999999995	4.56882	9.21936e-4	2.62346e-6	0.0278396	0.00103643
chr7	135503873	135503973	3648899	0	-	0.33	(0.32,0.35]	chr7	339187	651	INTRON	INTRON	CNOT4	ENSG00000080802.20	ENST00000541284.6:ENST00000451834.5:ENST00000423368.6:ENST00000361528.8:ENST00000428680.6:ENST00000315544.6:ENST00000491203.5:ENST00000498534.5:ENST00000465721.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	53	2	2.58753	3.67627	4.76501	0.0114287	0.00560122	0.0886611	0.0678837
chrX	48607688	48607786	7658761	0	+	0.469388	(0.44,0.476]	chrX	783852	28	UTR3	UTR3:EXON_MRNA	WDR13	ENSG00000101940.18	ENST00000376729.10	protein_coding	protein_coding	protein_coding	protein_coding	3	58	2	2.38763	3.6762699999999997	4.96491	0.00394089	0.0034249	0.0573041	0.0517761
chr21	42905971	42906071	7411464	0	+	0.51	(0.476,0.515]	chr21	755308	13	INTRON	INTRON	NDUFV3	ENSG00000160194.18	ENST00000460259.1:ENST00000340344.4:ENST00000354250.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	77	2	3.5704	3.67626	3.78212	8.75056e-4	2.36145e-4	0.0270926	0.0136195
chr5	146141558	146141657	2746976	0	-	0.464646	(0.44,0.476]	chr5	258805	14	EXON_MRNA	EXON_MRNA:INTRON	LARS1	ENSG00000133706.19	ENST00000674174.1:ENST00000674170.1:ENST00000674479.1:ENST00000674309.1:ENST00000674218.1:ENST00000674467.1:ENST00000674290.1:ENST00000674447.1:ENST00000674270.1:ENST00000674383.1:ENST00000674191.1:ENST00000674158.1:ENST00000506231.6:ENST00000674471.1:ENST00000674181.1:ENST00000394434.7:ENST00000674398.1:ENST00000674277.1:ENST00000274562.13:ENST00000510191.5:ENST00000504323.6:ENST00000674310.1:ENST00000512412.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	141	2	2.99453	3.6762200000000003	4.35791	6.59756e-5	1.84928e-5	0.00672159	0.00349761
chr12	132093014	132093114	5250274	0	+	0.38	(0.378,0.408]	chr12	499298	11	INTRON	INTRON	EP400P1	ENSG00000185684.16	ENST00000407361.8:ENST00000446190.5:ENST00000690966.1:ENST00000689047.1:ENST00000454179.7:ENST00000689533.1:ENST00000688036.1:ENST00000688136.1:ENST00000488030.5:ENST00000389560.6:ENST00000689403.1:ENST00000443539.6:ENST00000392352.5:ENST00000539205.5:ENST00000332441.7	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	2	48	2	2.17608	3.6761749999999997	5.17627	0.0218783	0.00208234	0.123836	0.0411801
chr15	90757113	90757212	6101315	0	+	0.393939	(0.378,0.408]	chr15	580878	18	INTRON	INTRON	BLM	ENSG00000197299.13	ENST00000355112.8:ENST00000648453.1:ENST00000681142.1:ENST00000560509.5:ENST00000559724.5:ENST00000680772.1:ENST00000558599.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	48	2	2.17608	3.6761749999999997	5.17627	0.0218783	0.00208234	0.123836	0.0411801
chr19	54448946	54449042	7211781	0	-	0.5	(0.476,0.515]	chr19	732167	10	EXON_LNCRNA	EXON_LNCRNA	LENG8-AS1	ENSG00000226696.7	ENST00000429922.5:ENST00000686924.1:ENST00000693322.1:ENST00000448978.1	lncRNA	lncRNA	lncRNA	lncRNA	10	316	2	3.33273	3.6761749999999997	4.01962	1.21594e-6	1.45254e-7	6.42263e-4	1.82193e-4
chr22	40957600	40957700	7521324	0	+	0.37	(0.35,0.378]	chr22	768492	36	INTRON	INTRON	RBX1	ENSG00000100387.9	ENST00000476110.1:ENST00000216225.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	40	2	2.60341	3.676005	4.7486	0.0275785	0.00418965	0.123904	0.0591344
chr5	163368031	163368130	2769568	0	-	0.363636	(0.35,0.378]	chr5	260675	1107	INTRON	INTRON	ENSG00000254186	ENSG00000254186.3	ENST00000646617.1:ENST00000503504.1	lncRNA	lncRNA	lncRNA	lncRNA	1	40	2	2.60341	3.676005	4.7486	0.0275785	0.00418965	0.123904	0.0591344
chr12	93433962	93434062	5388159	0	-	0.47	(0.44,0.476]	chr12	513727	92	INTRON	INTRON	UBE2N	ENSG00000177889.10	ENST00000318066.7:ENST00000550657.1:ENST00000549833.1:ENST00000549490.1:ENST00000552442.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	41	2	3.12799	3.67596	4.22393	0.0162322	0.0050635	0.109464	0.0621733
chr13	27074395	27074493	5565586	0	-	0.326531	(0.32,0.35]	chr13	531998	29	INTRON	INTRON	USP12	ENSG00000152484.14	ENST00000282344.11	protein_coding	protein_coding	protein_coding	protein_coding	1	42	2	2.6321	3.6758999999999995	4.7197	0.0268	0.00568521	0.123349	0.0678837
chr17	29778803	29778903	6749658	0	-	0.34	(0.32,0.35]	chr17	663430	175	INTRON	INTRON	SSH2	ENSG00000141298.19	ENST00000540801.6:ENST00000269033.7:ENST00000394848.5:ENST00000579040.5:ENST00000577483.1:ENST00000592397.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	42	2	2.6321	3.6758999999999995	4.7197	0.0268	0.00568521	0.123349	0.0678837
chr16	54923049	54923149	6488473	0	-	0.6	(0.57,1]	chr16	627574	67	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	CRNDE	ENSG00000245694.11	ENST00000613942.2:ENST00000661493.1:ENST00000668556.1:ENST00000660344.1:ENST00000502066.7:ENST00000559598.7:ENST00000688921.1:ENST00000501177.9:ENST00000661312.1:ENST00000689582.1:ENST00000558031.7:ENST00000689375.1:ENST00000691307.1:ENST00000657142.1:ENST00000557792.2:ENST00000559432.6:ENST00000655114.1:ENST00000560912.6:ENST00000558952.2	lncRNA	lncRNA	lncRNA	lncRNA	5	80	2	3.3823	3.6758249999999997	3.96935	4.27649e-5	1.76823e-6	0.00555805	8.01021e-4
chr11	483664	483763	4719241	0	+	0.424242	(0.408,0.44]	chr11	436026	32	INTRON	INTRON	PTDSS2	ENSG00000174915.12	ENST00000532614.5:ENST00000308020.6:ENST00000531520.5:ENST00000526878.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	142	2	2.91454	3.675345	4.43615	1.06492e-4	1.26191e-5	0.00874587	0.00281675
chr10	110975849	110975948	4521971	0	+	0.353535	(0.35,0.378]	chr10	417226	58	INTRON	INTRON	SHOC2	ENSG00000108061.13	ENST00000688928.1:ENST00000689997.1:ENST00000689300.1:ENST00000691441.1:ENST00000451838.2:ENST00000692776.1:ENST00000685613.1:ENST00000691903.1:ENST00000687592.1:ENST00000265277.10:ENST00000685059.1:ENST00000489390.1:ENST00000369452.9:ENST00000691369.1:ENST00000689118.1:ENST00000480155.2:ENST00000497305.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	54	2	1.93432	3.675235	5.41615	0.0481438	3.21724e-4	0.153019	0.0159645
chr10	91936973	91937072	4488860	0	+	0.464646	(0.44,0.476]	chr10	413294	8	INTRON	INTRON	BTAF1	ENSG00000095564.15	ENST00000265990.12	protein_coding	protein_coding	protein_coding	protein_coding	3	57	2	1.81595	3.67517	5.53439	0.0317953	4.05863e-4	0.14477	0.0185763
chr15	89875714	89875813	6257658	0	-	0.474747	(0.44,0.476]	chr15	597081	38	INTRON	INTRON	AP3S2:ARPIN-AP3S2	ENSG00000157823.17:ENSG00000250021.7	ENST00000336418.9:ENST00000398333.7:ENST00000423566.6:ENST00000558011.5:ENST00000560940.5:ENST00000557999.5:ENST00000558806.5:ENST00000559162.5:ENST00000558999.5:ENST00000559629.1:ENST00000558648.5:ENST00000560184.5:ENST00000560224.1:ENST00000560251.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	35	2	2.74372	3.675095	4.60647	0.0153007	0.0102339	0.108569	0.0850389
chr17	75224302	75224402	6674453	0	+	0.47	(0.44,0.476]	chr17	651381	56	INTRON	INTRON	NUP85	ENSG00000125450.11	ENST00000245544.9:ENST00000583948.5:ENST00000579324.5:ENST00000449421.6:ENST00000581104.5:ENST00000579298.5:ENST00000578830.5:ENST00000583877.5:ENST00000577561.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	35	2	2.74372	3.675095	4.60647	0.0153007	0.0102339	0.108569	0.0850389
chr5	139142060	139142160	2734896	0	-	0.47	(0.44,0.476]	chr5	257596	42	INTRON	INTRON	SIL1	ENSG00000120725.13	ENST00000394817.7:ENST00000265195.9:ENST00000509534.5:ENST00000508639.5:ENST00000507002.5:ENST00000505830.5:ENST00000505353.1:ENST00000504666.5:ENST00000509400.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	35	2	2.74372	3.675095	4.60647	0.0153007	0.0102339	0.108569	0.0850389
chr9	98848066	98848162	4174065	0	+	0.447917	(0.44,0.476]	chr9	380403	16	INTRON	INTRON	GALNT12	ENSG00000119514.7	ENST00000375011.4	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	2.74372	3.675095	4.60647	0.0153007	0.0102339	0.108569	0.0850389
chr7	43653372	43653470	3525612	0	-	0.27551	[0,0.28]	chr7	328755	23	INTRON	INTRON	COA1	ENSG00000106603.20	ENST00000415076.6:ENST00000446330.6:ENST00000446564.5:ENST00000438444.5:ENST00000223336.11:ENST00000310564.10:ENST00000415798.5:ENST00000431651.5:ENST00000451651.5:ENST00000418140.5:ENST00000448704.5:ENST00000470156.1:ENST00000457939.1:ENST00000420441.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	44	2	2.80396	3.67503	4.5461	0.0365918	0.0161429	0.138959	0.109464
chr7	107546013	107546113	3612847	0	-	0.25	[0,0.28]	chr7	336704	183	INTRON	INTRON	COG5	ENSG00000164597.15	ENST00000297135.9:ENST00000347053.8:ENST00000393603.7:ENST00000475638.6:ENST00000605888.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	44	2	2.80396	3.67503	4.5461	0.0365918	0.0161429	0.138959	0.109464
chr11	87161003	87161103	4844046	0	+	0.45	(0.44,0.476]	chr11	451862	32	INTRON	INTRON	TMEM135	ENSG00000166575.17	ENST00000340353.11:ENST00000305494.6:ENST00000532959.5:ENST00000525018.5	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	2.66433	3.6749850000000004	4.68564	0.0194358	0.00816201	0.119831	0.0766625
chr6	5186299	5186399	3049332	0	-	0.45	(0.44,0.476]	chr6	283826	417	INTRON	INTRON	LYRM4	ENSG00000214113.11	ENST00000330636.9:ENST00000468929.5:ENST00000464010.5:ENST00000463032.5:ENST00000480566.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	35	2	2.66433	3.6749850000000004	4.68564	0.0194358	0.00816201	0.119831	0.0766625
chr7	38737485	38737585	3521202	0	-	0.46	(0.44,0.476]	chr7	328360	83	INTRON	INTRON	VPS41	ENSG00000006715.16	ENST00000310301.9:ENST00000395969.6:ENST00000448833.5:ENST00000482217.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	35	2	2.66433	3.6749850000000004	4.68564	0.0194358	0.00816201	0.119831	0.0766625
chr11	71906746	71906845	4975785	0	-	0.40404	(0.378,0.408]	chr11	469940	23	INTRON	INTRON	XNDC1N	ENSG00000254469.10	ENST00000679695.1:ENST00000532852.5:ENST00000679412.2:ENST00000528511.6:ENST00000528560.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	58	2	2.22859	3.6749349999999996	5.12128	0.00763308	0.00251746	0.0777238	0.0446195
chr11	94474150	94474247	5018368	0	-	0.381443	(0.378,0.408]	chr11	473403	7	INTRON	INTRON	MRE11	ENSG00000020922.13	ENST00000323929.8:ENST00000407439.7:ENST00000323977.7:ENST00000393241.8	protein_coding	protein_coding	protein_coding	protein_coding	3	58	2	2.22859	3.6749349999999996	5.12128	0.00763308	0.00251746	0.0777238	0.0446195
chr22	38685640	38685738	7588795	0	-	0.346939	(0.32,0.35]	chr22	776887	2	UTR3	UTR3:EXON_MRNA	JOSD1	ENSG00000100221.11	ENST00000683374.1:ENST00000216039.9	protein_coding	protein_coding	protein_coding	protein_coding	2	52	2	2.01768	3.67493	5.33218	0.0361337	0.00204346	0.152563	0.04086
chr1	14389385	14389485	380063	0	-	0.37	(0.35,0.378]	chr1	44580	380	INTRON	INTRON	KAZN-AS1	ENSG00000234593.3	ENST00000666654.1:ENST00000661613.1:ENST00000665002.1:ENST00000657979.1:ENST00000447908.3	lncRNA	lncRNA	lncRNA	lncRNA	1	38	2	3.05136	3.674875	4.29839	0.0294717	0.00578894	0.128055	0.0684334
chr3	43698975	43699075	1410254	0	+	0.32	(0.28,0.32]	chr3	147916	3	SS3_PROX	SS3_PROX:INTRON	ABHD5	ENSG00000011198.10	ENST00000643520.1:ENST00000456453.5:ENST00000458276.7:ENST00000486764.1:ENST00000649763.1:ENST00000643140.1:ENST00000643500.1:ENST00000644371.2:ENST00000013894.3:ENST00000646378.1:ENST00000643477.1:ENST00000646799.1:ENST00000454293.2:ENST00000642351.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	190	2	3.49349	3.67474	3.85599	4.63052e-4	5.63223e-6	0.0198709	0.00165121
chr17	31959160	31959260	6595899	0	+	0.37	(0.35,0.378]	chr17	641554	111	INTRON	INTRON	SUZ12	ENSG00000178691.11	ENST00000322652.10:ENST00000580398.1	protein_coding	protein_coding	protein_coding	protein_coding	4	68	2	1.7339	3.6746700000000003	5.61544	0.0260366	5.06729e-4	0.133676	0.020816
chr7	728969	729065	3267869	0	+	0.46875	(0.44,0.476]	chr7	303441	13	INTRON	INTRON	DNAAF5	ENSG00000164818.16	ENST00000297440.11:ENST00000437419.5:ENST00000438961.1:ENST00000440747.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	142	2	3.48044	3.6746350000000003	3.86883	6.78832e-5	1.24341e-5	0.00682671	0.00280854
chr6	122421092	122421185	2947539	0	+	0.258065	[0,0.28]	chr6	277480	5	INTRON	INTRON	HSF2	ENSG00000025156.13	ENST00000452194.5:ENST00000368455.9	protein_coding	protein_coding	protein_coding	protein_coding	2	61	2	2.52489	3.67461	4.82433	0.0200334	0.0084136	0.109608	0.082518
chr20	43669080	43669178	7276075	0	+	0.591837	(0.57,1]	chr20	739717	14	INTRON	INTRON	MYBL2	ENSG00000101057.16	ENST00000396863.8:ENST00000217026.5	protein_coding	protein_coding	protein_coding	protein_coding	1	24	2	2.78409	3.67387	4.56365	0.0116033	0.00129848	0.0889104	0.0333764
chr5	97183404	97183504	2436806	0	+	0.36	(0.35,0.378]	chr5	234100	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	LIX1-AS1	ENSG00000251513.2	ENST00000504578.2	lncRNA	lncRNA	lncRNA	lncRNA	1	38	2	2.30249	3.6738049999999998	5.04512	0.0519726	0.00393262	0.176696	0.0548259
chr19	629139	629239	7110041	0	-	0.53	(0.515,0.57]	chr19	713928	2	SS5_PROX	SS5_PROX:INTRON	POLRMT	ENSG00000099821.14	ENST00000588649.7:ENST00000590573.4	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	3.30665	3.673755	4.04086	0.0197045	0.00213226	0.120063	0.041756
chr16	70244928	70245018	6510012	0	-	0.277778	[0,0.28]	chr16	630485	8	INTRON	INTRON	SMG1P7	ENSG00000261556.10	ENST00000565246.7:ENST00000568855.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	3	79	2	1.66484	3.6735949999999997	5.68235	0.0617844	4.43841e-4	0.174281	0.0190552
chr12	101746673	101746771	5398110	0	-	0.285714	(0.28,0.32]	chr12	514863	13	UTR3	UTR3:EXON_MRNA	GNPTAB	ENSG00000111670.16	ENST00000299314.12	protein_coding	protein_coding	protein_coding	protein_coding	1	44	2	2.2609	3.67356	5.08622	0.0671429	0.00227525	0.183051	0.0437013
chr12	91487122	91487222	5384087	0	-	0.52	(0.515,0.57]	chr12	513479	874	INTRON	INTRON	ENSG00000289605	ENSG00000289605.1	ENST00000685093.1	lncRNA	lncRNA	lncRNA	lncRNA	1	32	2	2.74772	3.67343	4.59914	0.0142192	0.00616166	0.103638	0.0676501
chr17	82597765	82597863	6693402	0	+	0.520408	(0.515,0.57]	chr17	654694	12	INTRON	INTRON	FOXK2	ENSG00000141568.21	ENST00000473637.6:ENST00000335255.10:ENST00000571989.1:ENST00000529652.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	32	2	2.74772	3.67343	4.59914	0.0142192	0.00616166	0.103638	0.0676501
chr9	93540522	93540622	4158943	0	+	0.52	(0.515,0.57]	chr9	379180	78	INTRON	INTRON	FAM120A	ENSG00000048828.17	ENST00000277165.11:ENST00000427765.1	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	2.74772	3.67343	4.59914	0.0142192	0.00616166	0.103638	0.0676501
chr12	91583838	91583938	5385055	0	-	0.31	(0.28,0.32]	chr12	513485	766	INTRON	INTRON	ENSG00000289605	ENSG00000289605.1	ENST00000685093.1	lncRNA	lncRNA	lncRNA	lncRNA	1	44	2	2.51488	3.673265	4.83165	0.0380957	0.00527257	0.141678	0.0656295
chr2	191866064	191866164	961200	0	+	0.29	(0.28,0.32]	chr2	104333	189	INTRON	INTRON	CAVIN2-AS1	ENSG00000233766.8	ENST00000424116.7	lncRNA	lncRNA	lncRNA	lncRNA	1	44	2	2.51488	3.673265	4.83165	0.0380957	0.00527257	0.141678	0.0656295
chr5	54042906	54043006	2618233	0	-	0.3	(0.28,0.32]	chr5	248835	1309	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	44	2	2.51488	3.673265	4.83165	0.0380957	0.00527257	0.141678	0.0656295
chr6	38873376	38873476	2862032	0	+	0.3	(0.28,0.32]	chr6	270571	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	DNAH8	ENSG00000124721.18	ENST00000327475.11:ENST00000449981.6:ENST00000359357.7	protein_coding	protein_coding	protein_coding	protein_coding	1	44	2	2.51488	3.673265	4.83165	0.0380957	0.00527257	0.141678	0.0656295
chrX	44933684	44933784	7649207	0	+	0.51	(0.476,0.515]	chrX	782726	593	INTRON	INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000675440.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000621147.5:ENST00000475233.1:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	50	2	2.10874	3.673215	5.23769	0.0285608	5.17244e-4	0.12666	0.0203753
chr10	50599835	50599935	4620449	0	-	0.36	(0.35,0.378]	chr10	425458	92	INTRON	INTRON	SGMS1	ENSG00000198964.14	ENST00000429490.5:ENST00000361781.7:ENST00000619438.4:ENST00000609445.5:ENST00000608287.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	37	2	2.86451	3.673175	4.48184	0.0191702	0.0109111	0.108861	0.0923273
chr10	123155298	123155384	4533164	0	+	0.372093	(0.35,0.378]	chr10	418412	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	BUB3	ENSG00000154473.18	ENST00000368865.9:ENST00000368859.6:ENST00000368858.9:ENST00000407911.2	protein_coding	protein_coding	protein_coding	protein_coding	1	37	2	2.86451	3.673175	4.48184	0.0191702	0.0109111	0.108861	0.0923273
chr17	18896531	18896631	6570139	0	+	0.36	(0.35,0.378]	chr17	638865	63	INTRON	INTRON	PRPSAP2	ENSG00000141127.15	ENST00000610773.4:ENST00000432893.6:ENST00000492129.5:ENST00000419071.6:ENST00000487101.5:ENST00000536323.5:ENST00000412418.5:ENST00000268835.7:ENST00000395656.6:ENST00000455992.6:ENST00000422237.5:ENST00000542013.5:ENST00000574451.5:ENST00000575337.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	37	2	2.86451	3.673175	4.48184	0.0191702	0.0109111	0.108861	0.0923273
chr1	47261720	47261817	445569	0	-	0.463918	(0.44,0.476]	chr1	53989	8	INTRON	INTRON	STIL	ENSG00000123473.17	ENST00000360380.7:ENST00000371877.8:ENST00000337817.10:ENST00000682940.1:ENST00000683977.1:ENST00000682977.1:ENST00000396221.6:ENST00000684618.1:ENST00000447475.7:ENST00000418131.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	50	2	2.82351	3.6731050000000005	4.5227	0.0128818	0.00191049	0.0926667	0.0403772
chr12	50468219	50468319	5137028	0	+	0.48	(0.476,0.515]	chr12	484448	7	INTRON	INTRON	LARP4	ENSG00000161813.23	ENST00000293618.12:ENST00000429001.7:ENST00000398473.7:ENST00000518444.5:ENST00000347328.9:ENST00000520064.2	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	2.73205	3.673035	4.61402	0.0159328	0.00947755	0.109464	0.0817766
chr12	76822731	76822831	5174451	0	+	0.5	(0.476,0.515]	chr12	490130	2	SS5_PROX	SS5_PROX:INTRON	ZDHHC17	ENSG00000186908.15	ENST00000546778.5:ENST00000426126.7:ENST00000552453.5:ENST00000550876.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	35	2	2.73205	3.673035	4.61402	0.0159328	0.00947755	0.109464	0.0817766
chr19	3753473	3753570	7118372	0	-	0.494845	(0.476,0.515]	chr19	715900	6	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	APBA3	ENSG00000011132.12	ENST00000316757.4:ENST00000588984.5:ENST00000590064.1:ENST00000592826.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	35	2	2.73205	3.673035	4.61402	0.0159328	0.00947755	0.109464	0.0817766
chr2	238447104	238447203	1052771	0	+	0.50505	(0.476,0.515]	chr2	112004	7	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	ASB1	ENSG00000065802.12	ENST00000264607.9:ENST00000481566.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	35	2	2.73205	3.673035	4.61402	0.0159328	0.00947755	0.109464	0.0817766
chr6	150955494	150955594	2998775	0	+	0.49	(0.476,0.515]	chr6	280570	1	SS3_PROX	SS3_PROX:INTRON	MTHFD1L	ENSG00000120254.16	ENST00000611279.4:ENST00000367321.8:ENST00000618312.4	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	2.73205	3.673035	4.61402	0.0159328	0.00947755	0.109464	0.0817766
chr9	123449301	123449400	4341193	0	-	0.494949	(0.476,0.515]	chr9	399020	85	INTRON	INTRON	DENND1A	ENSG00000119522.17	ENST00000373624.6:ENST00000473039.5:ENST00000394215.7:ENST00000373620.7:ENST00000491650.5:ENST00000497135.5:ENST00000373618.1:ENST00000479305.5:ENST00000462245.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	35	2	2.73205	3.673035	4.61402	0.0159328	0.00947755	0.109464	0.0817766
chr12	42215675	42215774	5313387	0	-	0.494949	(0.476,0.515]	chr12	505340	28	INTRON	INTRON	YAF2	ENSG00000015153.15	ENST00000534854.7:ENST00000327791.8:ENST00000380790.4:ENST00000552109.5:ENST00000547622.5:ENST00000547351.5:ENST00000551268.5:ENST00000548661.5:ENST00000546726.5:ENST00000547724.1:ENST00000552928.5:ENST00000548917.1:ENST00000547254.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	35	2	2.65268	3.67294	4.6932	0.0201975	0.00753088	0.121243	0.074841
chr12	121311705	121311804	5436757	0	-	0.50505	(0.476,0.515]	chr12	519847	13	INTRON	INTRON	ANAPC5	ENSG00000089053.13	ENST00000261819.8:ENST00000535641.5:ENST00000541887.5:ENST00000534976.5:ENST00000441917.6:ENST00000539079.5:ENST00000544314.5:ENST00000535482.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	35	2	2.65268	3.67294	4.6932	0.0201975	0.00753088	0.121243	0.074841
chr16	8807660	8807758	6284757	0	+	0.479592	(0.476,0.515]	chr16	601833	2	EXON_MRNA	EXON_MRNA:INTRON	PMM2	ENSG00000140650.13	ENST00000566983.5:ENST00000682008.1:ENST00000683435.1:ENST00000683094.1:ENST00000566604.5:ENST00000570134.5:ENST00000268261.9:ENST00000683274.1:ENST00000682393.1:ENST00000566540.5:ENST00000562318.5:ENST00000565896.5:ENST00000568602.5:ENST00000570076.5:ENST00000569958.5:ENST00000565221.5:ENST00000564069.1:ENST00000567697.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	35	2	2.65268	3.67294	4.6932	0.0201975	0.00753088	0.121243	0.074841
chr16	81492154	81492253	6405471	0	+	0.484848	(0.476,0.515]	chr16	615026	463	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	2.65268	3.67294	4.6932	0.0201975	0.00753088	0.121243	0.074841
chr7	105375350	105375450	3603770	0	-	0.49	(0.476,0.515]	chr7	336161	684	INTRON	INTRON	SRPK2	ENSG00000135250.17	ENST00000393651.8:ENST00000482897.5:ENST00000460391.5:ENST00000462282.5:ENST00000465112.5:ENST00000482862.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	35	2	2.65268	3.67294	4.6932	0.0201975	0.00753088	0.121243	0.074841
chr20	47285834	47285934	7348795	0	-	0.36	(0.35,0.378]	chr20	749306	18	INTRON	INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000467200.6:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000468376.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	37	2	2.48657	3.6726349999999996	4.8587	0.032907	0.00695662	0.145164	0.0718189
chrX	66168957	66169052	7672723	0	+	0.378947	(0.378,0.408]	chrX	785250	8	INTRON	INTRON	HEPH	ENSG00000089472.18	ENST00000519389.6:ENST00000683049.1:ENST00000458621.6:ENST00000684042.1:ENST00000343002.7:ENST00000336279.9:ENST00000429547.6:ENST00000441993.7:ENST00000419594.6:ENST00000682362.1:ENST00000425114.2:ENST00000682927.1:ENST00000683420.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	109	2	3.31218	3.67256	4.03294	2.90033e-4	6.52685e-5	0.0157077	0.00669119
chr10	35082084	35082183	4601080	0	-	0.424242	(0.408,0.44]	chr10	423885	79	INTRON	INTRON	CUL2	ENSG00000108094.17	ENST00000626172.3:ENST00000374751.7:ENST00000374748.5:ENST00000374749.8:ENST00000690123.1:ENST00000691974.1:ENST00000688571.1:ENST00000690393.1:ENST00000374754.9:ENST00000691272.1:ENST00000688390.1:ENST00000687282.1:ENST00000691201.1:ENST00000687194.1:ENST00000691962.1:ENST00000691858.1:ENST00000691263.1:ENST00000687524.1:ENST00000673636.2:ENST00000692866.1:ENST00000693739.1:ENST00000684965.1:ENST00000691457.1:ENST00000688541.1:ENST00000685488.1:ENST00000686903.1:ENST00000684955.1:ENST00000688736.1:ENST00000686156.1:ENST00000685421.1:ENST00000468804.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	35	2	2.74518	3.672485	4.59979	0.0152229	0.0109537	0.108535	0.0873034
chr13	28154779	28154879	5460991	0	+	0.44	(0.408,0.44]	chr13	523235	153	INTRON	INTRON	PAN3	ENSG00000152520.14	ENST00000503791.5:ENST00000380958.8:ENST00000399613.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	35	2	2.74518	3.672485	4.59979	0.0152229	0.0109537	0.108535	0.0873034
chr16	15706212	15706312	6307461	0	+	0.44	(0.408,0.44]	chr16	603482	42	INTRON	INTRON	NDE1	ENSG00000072864.16	ENST00000396355.5:ENST00000674888.1:ENST00000675171.1:ENST00000675951.1:ENST00000674900.1:ENST00000674588.1:ENST00000674538.1:ENST00000396354.6:ENST00000675926.1:ENST00000674995.1:ENST00000674554.1:ENST00000674581.1:ENST00000577101.6:ENST00000572756.6:ENST00000573694.5:ENST00000572967.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	35	2	2.74518	3.672485	4.59979	0.0152229	0.0109537	0.108535	0.0873034
chr18	21688145	21688244	6955505	0	-	0.434343	(0.408,0.44]	chr18	688091	38	INTRON	INTRON	ABHD3	ENSG00000158201.10	ENST00000289119.7:ENST00000580981.5:ENST00000578270.5:ENST00000577891.1:ENST00000579875.5:ENST00000584464.1:ENST00000577928.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	35	2	2.74518	3.672485	4.59979	0.0152229	0.0109537	0.108535	0.0873034
chr7	24841679	24841778	3504423	0	-	0.424242	(0.408,0.44]	chr7	327041	5	INTRON	INTRON	OSBPL3	ENSG00000070882.13	ENST00000313367.7:ENST00000409863.5:ENST00000396431.5:ENST00000409452.5:ENST00000409759.5:ENST00000409555.5:ENST00000396429.5:ENST00000409069.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	35	2	2.74518	3.672485	4.59979	0.0152229	0.0109537	0.108535	0.0873034
chr1	86970535	86970634	154153	0	+	0.494949	(0.476,0.515]	chr1	16962	117	INTRON	INTRON	HS2ST1	ENSG00000153936.18	ENST00000370550.10:ENST00000370551.8:ENST00000687893.1:ENST00000693745.1:ENST00000689904.1:ENST00000690674.1:ENST00000591456.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	57	2	1.80284	3.6724699999999997	5.5421	0.033161	3.56777e-4	0.145899	0.0175154
chr10	74103319	74103419	4455572	0	+	0.42	(0.408,0.44]	chr10	411474	1	SS3_PROX	SS3_PROX:INTRON	VCL	ENSG00000035403.18	ENST00000623461.3:ENST00000372755.7:ENST00000624354.3:ENST00000211998.10:ENST00000478896.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	51	2	1.94273	3.672405	5.40208	0.0456237	2.37882e-4	0.149888	0.0136195
chr1	10516927	10517027	23397	0	+	0.43	(0.408,0.44]	chr1	2505	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	PEX14	ENSG00000142655.13	ENST00000472851.1:ENST00000356607.9:ENST00000491661.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	35	2	2.66579	3.672365	4.67894	0.019342	0.0087648	0.119831	0.0788605
chr1	88720002	88720102	156126	0	+	0.42	(0.408,0.44]	chr1	17045	350	INTRON	INTRON	PKN2	ENSG00000065243.20	ENST00000316005.11:ENST00000370521.8:ENST00000370513.9	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	2.66579	3.672365	4.67894	0.019342	0.0087648	0.119831	0.0788605
chr1	161327995	161328095	234673	0	+	0.44	(0.408,0.44]	chr1	28271	2	SS3_PROX	SS3_PROX:INTRON	SDHC	ENSG00000143252.16	ENST00000367975.7:ENST00000342751.8:ENST00000515731.1:ENST00000432287.6:ENST00000513009.5:ENST00000392169.6:ENST00000504963.5:ENST00000470743.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	35	2	2.66579	3.672365	4.67894	0.019342	0.0087648	0.119831	0.0788605
chr2	111834303	111834403	1214364	0	-	0.44	(0.408,0.44]	chr2	129137	3	SS5_PROX	SS5_PROX:INTRON	ANAPC1	ENSG00000153107.13	ENST00000427997.5:ENST00000341068.8	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	2.66579	3.672365	4.67894	0.019342	0.0087648	0.119831	0.0788605
chr6	35379016	35379116	2852343	0	+	0.42	(0.408,0.44]	chr6	269491	315	INTRON	INTRON	PPARD	ENSG00000112033.14	ENST00000418635.6:ENST00000448077.6:ENST00000360694.8:ENST00000311565.4:ENST00000337400.6	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	2.66579	3.672365	4.67894	0.019342	0.0087648	0.119831	0.0788605
chr7	44983607	44983706	3528786	0	-	0.414141	(0.408,0.44]	chr7	329133	7	EXON_LNCRNA	EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SNHG15	ENSG00000232956.10	ENST00000578968.6:ENST00000668580.1:ENST00000582727.3:ENST00000585030.6:ENST00000577700.5:ENST00000667823.2:ENST00000579383.6:ENST00000580458.5:ENST00000580528.2:ENST00000667119.1:ENST00000438705.3:ENST00000653305.1:ENST00000584327.5	lncRNA	lncRNA	lncRNA	lncRNA	1	35	2	2.66579	3.672365	4.67894	0.019342	0.0087648	0.119831	0.0788605
chr8	224412	224512	3883272	0	-	0.44	(0.408,0.44]	chr8	357290	46	INTRON	INTRON	RPL23AP53	ENSG00000223508.5	ENST00000606975.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	1	35	2	2.66579	3.672365	4.67894	0.019342	0.0087648	0.119831	0.0788605
chr12	42324488	42324588	5313760	0	-	0.32	(0.28,0.32]	chr12	505395	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ZCRB1	ENSG00000139168.9	ENST00000266529.8:ENST00000679269.1:ENST00000677694.1:ENST00000548022.2:ENST00000679184.1:ENST00000676501.1:ENST00000552235.2:ENST00000552673.5:ENST00000678390.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	41	2	2.91832	3.6723100000000004	4.4263	0.0330296	0.0102484	0.133816	0.089002
chr3	184843745	184843843	1583092	0	+	0.285714	(0.28,0.32]	chr3	163848	1	INTRON	INTRON	VPS8	ENSG00000156931.16	ENST00000287546.8:ENST00000625842.3:ENST00000436792.6:ENST00000446204.6:ENST00000422105.5:ENST00000452666.3:ENST00000469479.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	41	2	2.91832	3.6723100000000004	4.4263	0.0330296	0.0102484	0.133816	0.089002
chr4	53396950	53397049	1959645	0	+	0.282828	(0.28,0.32]	chr4	196431	51	INTRON	INTRON	FIP1L1	ENSG00000145216.16	ENST00000337488.11:ENST00000358575.9:ENST00000507922.5:ENST00000306932.10:ENST00000505125.5:ENST00000513975.5:ENST00000514543.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	41	2	2.91832	3.6723100000000004	4.4263	0.0330296	0.0102484	0.133816	0.089002
chr19	52839075	52839172	7208304	0	-	0.463918	(0.44,0.476]	chr19	731593	12	UTR3	UTR3:EXON_MRNA:INTRON	ZNF28:ZNF468	ENSG00000198538.11:ENSG00000204604.13	ENST00000596559.5:ENST00000594602.5:ENST00000595646.6:ENST00000243639.8	protein_coding	protein_coding	protein_coding	protein_coding	2	47	2	2.14573	3.6722650000000003	5.1988	0.0238593	0.00151532	0.129075	0.0352794
chr6	57051908	57052000	2877981	0	+	0.445652	(0.44,0.476]	chr6	273203	7	INTRON	INTRON	KIAA1586	ENSG00000168116.14	ENST00000545356.5:ENST00000370733.5:ENST00000488682.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	47	2	2.14573	3.6722650000000003	5.1988	0.0238593	0.00151532	0.129075	0.0352794
chr9	123844977	123845077	4345173	0	-	0.47	(0.44,0.476]	chr9	399130	466	INTRON	INTRON	DENND1A	ENSG00000119522.17	ENST00000373624.6:ENST00000394215.7:ENST00000373620.7:ENST00000373618.1	protein_coding	protein_coding	protein_coding	protein_coding	2	47	2	2.14573	3.6722650000000003	5.1988	0.0238593	0.00151532	0.129075	0.0352794
chr1	207329718	207329817	303349	0	+	0.494949	(0.476,0.515]	chr1	34907	23	INTRON	INTRON	CD55	ENSG00000196352.18	ENST00000695822.1:ENST00000695823.1:ENST00000695826.1:ENST00000695825.1:ENST00000695824.1:ENST00000367063.6:ENST00000695827.1:ENST00000695828.1:ENST00000645323.1:ENST00000391921.9:ENST00000695829.1:ENST00000367064.9:ENST00000314754.12:ENST00000644836.1:ENST00000343420.6:ENST00000476590.1:ENST00000465534.5:ENST00000488171.6:ENST00000618707.2:ENST00000635614.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	124	2	2.93667	3.6722200000000003	4.40777	3.86734e-4	6.94954e-6	0.0182867	0.00187714
chr7	72880881	72880981	3329804	0	+	0.33	(0.32,0.35]	chr7	309555	6	INTRON	INTRON	POM121	ENSG00000196313.13	ENST00000627934.3:ENST00000395270.5	protein_coding	protein_coding	protein_coding	protein_coding	3	68	2	1.73318	3.6722099999999998	5.61124	0.0462868	1.88018e-4	0.150684	0.011951
chr19	11108596	11108693	7017016	0	+	0.391753	(0.378,0.408]	chr19	697452	7	INTRON	INTRON	LDLR	ENSG00000130164.14	ENST00000557933.5:ENST00000558518.6:ENST00000545707.5:ENST00000535915.5:ENST00000455727.6:ENST00000558013.5:ENST00000252444.9:ENST00000560467.1	protein_coding	protein_coding	protein_coding	protein_coding	5	173	2	3.41545	3.672195	3.92894	1.73194e-5	1.06764e-5	0.00316166	0.00256986
chr10	144346	144446	4377865	0	+	0.48	(0.476,0.515]	chr10	403709	84	INTRON	INTRON	ZMYND11	ENSG00000015171.20	ENST00000397962.8:ENST00000439456.5:ENST00000309776.8:ENST00000397959.7:ENST00000509513.6:ENST00000381591.5:ENST00000381604.9:ENST00000602682.6:ENST00000381607.8:ENST00000403354.5:ENST00000627286.2:ENST00000402736.5:ENST00000397955.7	protein_coding	protein_coding	protein_coding	protein_coding	2	50	2	2.05154	3.672175	5.29281	0.0336015	4.07635e-4	0.134145	0.0181306
chr8	22371733	22371833	3712673	0	+	0.48	(0.476,0.515]	chr8	344795	36	INTRON	INTRON	SLC39A14	ENSG00000104635.15	ENST00000359741.10:ENST00000381237.6:ENST00000520644.1:ENST00000240095.10:ENST00000289952.9:ENST00000524285.1	protein_coding	protein_coding	protein_coding	protein_coding	2	50	2	2.05154	3.672175	5.29281	0.0336015	4.07635e-4	0.134145	0.0181306
chr15	58880994	58881091	6193572	0	-	0.597938	(0.57,1]	chr15	590010	5	INTRON	INTRON	SLTM	ENSG00000137776.17	ENST00000380516.7:ENST00000432750.5:ENST00000560494.1:ENST00000492526.5:ENST00000493062.5:ENST00000557924.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	57	2	3.04906	3.6721749999999997	4.29529	4.97245e-4	4.35224e-6	0.0206993	0.00140234
chr1	245837204	245837304	673994	0	-	0.43	(0.408,0.44]	chr1	79669	224	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000366517.5:ENST00000366516.5:ENST00000490107.6:ENST00000470510.5:ENST00000483072.5:ENST00000493441.5:ENST00000488153.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	51	2	2.21857	3.6721250000000003	5.12568	0.0209591	7.90919e-4	0.112046	0.0258324
chr9	120772017	120772095	4335244	0	-	0.397436	(0.378,0.408]	chr9	398229	1	INTRON	INTRON	FBXW2	ENSG00000119402.18	ENST00000493559.1:ENST00000684405.1:ENST00000684001.1:ENST00000684047.1:ENST00000608872.6:ENST00000453291.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	52	2	2.05897	3.67209	5.28521	0.0339294	4.52877e-4	0.134508	0.0192381
chr16	67637872	67637965	6368384	0	+	0.494624	(0.476,0.515]	chr16	611890	1	UTR3	UTR3:EXON_MRNA	CTCF	ENSG00000102974.16	ENST00000646076.1:ENST00000264010.10:ENST00000401394.6:ENST00000646771.1:ENST00000644753.1:ENST00000642819.1:ENST00000645306.1:ENST00000643892.1:ENST00000645699.1:ENST00000645409.1:ENST00000646566.1:ENST00000644950.1:ENST00000642420.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	50	2	2.16377	3.6720800000000002	5.18039	0.0243026	6.58744e-4	0.12011	0.0232396
chr18	36161602	36161701	6891764	0	+	0.333333	(0.32,0.35]	chr18	683062	2	INTRON	INTRON	ELP2	ENSG00000134759.14	ENST00000351393.10:ENST00000442325.6:ENST00000358232.11:ENST00000423854.6:ENST00000539560.5:ENST00000350494.10:ENST00000542824.5:ENST00000540799.1:ENST00000542050.5:ENST00000543861.5:ENST00000540766.5:ENST00000541294.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	42	2	3.28107	3.6720300000000003	4.06299	0.0559439	0.00262488	0.165463	0.0470772
chr22	49584654	49584754	7601926	0	-	0.55	(0.515,0.57]	chr22	778566	1431	INTRON	INTRON	MIR3667HG	ENSG00000188511.13	ENST00000414287.5:ENST00000416411.1	lncRNA	lncRNA	lncRNA	lncRNA	2	67	2	3.53844	3.6718200000000003	3.8052	7.92613e-4	1.67082e-4	0.0259663	0.0111796
chr2	27357470	27357549	717552	0	+	0.443038	(0.44,0.476]	chr2	83193	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GTF3C2-AS2	ENSG00000234072.1	ENST00000447070.1:ENST00000453289.1:ENST00000412749.1	lncRNA	lncRNA	lncRNA	lncRNA	8	261	2	3.09089	3.671805	4.25272	1.43594e-5	1.362e-7	0.00284044	1.75299e-4
chr7	157226631	157226729	3454838	0	+	0.295918	(0.28,0.32]	chr7	322996	7	INTRON	INTRON	UBE3C	ENSG00000009335.18	ENST00000348165.10:ENST00000470408.5:ENST00000497368.1:ENST00000494532.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	54	2	2.1895	3.67154	5.15358	0.0227063	0.0052282	0.124921	0.0633615
chr7	66938453	66938552	3326406	0	+	0.282828	(0.28,0.32]	chr7	309339	72	INTRON	INTRON	TMEM248	ENSG00000106609.16	ENST00000341567.8:ENST00000607045.5:ENST00000433271.6:ENST00000413593.5:ENST00000424964.6:ENST00000418375.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	41	2	2.29724	3.6715150000000003	5.04579	0.0554156	0.00714672	0.18407	0.0723634
chr12	74268409	74268509	5368133	0	-	0.55	(0.515,0.57]	chr12	512126	175	INTRON	INTRON	LINC02882:ENSG00000257183	ENSG00000251138.7:ENSG00000257183.1	ENST00000663261.1:ENST00000665907.1:ENST00000669556.1:ENST00000653134.1:ENST00000549905.5:ENST00000662107.1:ENST00000658833.1:ENST00000515416.7:ENST00000551726.2:ENST00000670573.1:ENST00000656876.1:ENST00000668228.1:ENST00000668997.1:ENST00000665895.1:ENST00000670471.1:ENST00000658677.1:ENST00000668665.1:ENST00000552046.1	lncRNA	lncRNA	lncRNA	lncRNA	2	45	2	2.15051	3.6712949999999998	5.19208	0.0238113	3.4344e-4	0.118889	0.0164987
chr19	47105598	47105698	7196032	0	-	0.47	(0.44,0.476]	chr19	729130	106	INTRON	INTRON	ZC3H4	ENSG00000130749.10	ENST00000253048.10:ENST00000594019.5:ENST00000597069.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	49	2	1.85146	3.671215	5.49097	0.0545846	4.8612e-4	0.182529	0.0203841
chr5	112995647	112995746	2453575	0	+	0.282828	(0.28,0.32]	chr5	235094	21	INTRON	INTRON	DCP2	ENSG00000172795.17	ENST00000515408.5:ENST00000513585.6:ENST00000502635.2:ENST00000389063.3:ENST00000674880.1:ENST00000512751.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	45	2	3.30893	3.67119	4.03345	0.0704058	0.00260504	0.184298	0.0470772
chr14	55054093	55054192	5725394	0	+	0.20202	[0,0.28]	chr14	543372	19	INTRON	INTRON	MAPK1IP1L	ENSG00000168175.15	ENST00000395468.9:ENST00000554364.1:ENST00000622254.1:ENST00000556515.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	71	2	1.99345	3.6711750000000003	5.3489	0.0211881	0.00514751	0.123133	0.062965
chr10	28537739	28537815	4413848	0	+	0.315789	(0.28,0.32]	chr10	407141	2	UTR3	UTR3:EXON_MRNA:INTRON	WAC	ENSG00000095787.24	ENST00000680735.1:ENST00000375664.8:ENST00000428935.6:ENST00000651598.1:ENST00000628285.3:ENST00000681112.1:ENST00000679570.1:ENST00000375646.5:ENST00000354911.9:ENST00000347934.8:ENST00000420266.6:ENST00000651885.1:ENST00000651441.1:ENST00000679398.1:ENST00000424454.5:ENST00000442148.6:ENST00000448193.5:ENST00000414108.6:ENST00000679428.1:ENST00000439676.5:ENST00000345541.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	454	2	3.22368	3.670965	4.11825	1.59995e-6	1.08562e-6	8.3872e-4	5.99786e-4
chr7	116211134	116211234	3382116	0	+	0.53	(0.515,0.57]	chr7	316843	4	SS5_PROX	SS5_PROX:INTRON	TES	ENSG00000135269.18	ENST00000461440.5:ENST00000358204.9:ENST00000455989.1:ENST00000492891.5:ENST00000496871.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	32	2	2.83188	3.67094	4.51	0.0108207	0.00809449	0.0920575	0.0766625
chr2	134129684	134129784	868961	0	+	0.35	(0.32,0.35]	chr2	97549	90	INTRON	INTRON	MGAT5	ENSG00000152127.9	ENST00000468758.1:ENST00000481801.5:ENST00000409645.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	62	2	1.83315	3.67084	5.50853	0.0313348	0.0010959399999999999	0.144381	0.0304174
chr12	28199156	28199256	5100357	0	+	0.45	(0.44,0.476]	chr12	481903	1	SS5_PROX	SS5_PROX:INTRON	CCDC91	ENSG00000123106.11	ENST00000540794.5:ENST00000538586.5:ENST00000536154.5:ENST00000535520.5:ENST00000539107.5:ENST00000544649.5:ENST00000545336.5:ENST00000536442.6:ENST00000544780.5:ENST00000543534.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	35	2	2.81896	3.6708300000000005	4.5227	0.0128818	0.0120766	0.0962311	0.0926667
chr13	99533642	99533741	5527199	0	+	0.444444	(0.44,0.476]	chr13	528357	37	INTRON	INTRON	TM9SF2	ENSG00000125304.10	ENST00000642475.1:ENST00000376387.5:ENST00000463709.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	35	2	2.81896	3.6708300000000005	4.5227	0.0128818	0.0120766	0.0962311	0.0926667
chr10	48331357	48331457	4431236	0	+	0.37	(0.35,0.378]	chr10	408569	50	INTRON	INTRON	MAPK8	ENSG00000107643.17	ENST00000395611.7:ENST00000432379.5:ENST00000374189.6:ENST00000429041.6:ENST00000374179.8:ENST00000426557.5:ENST00000476134.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	65	2	1.6599	3.670775	5.68165	0.0545616	9.36553e-5	0.165292	0.00811835
chr16	75010868	75010968	6389537	0	+	0.54	(0.515,0.57]	chr16	614482	81	INTRON	INTRON	ZNRF1	ENSG00000186187.12	ENST00000335325.9:ENST00000320619.10:ENST00000567962.5:ENST00000566250.5:ENST00000564320.1:ENST00000568511.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	32	2	2.65834	3.6707199999999998	4.6831	0.0187418	0.00471288	0.117523	0.0600108
chr19	36234663	36234762	7057622	0	+	0.525253	(0.515,0.57]	chr19	704670	55	INTRON	INTRON	ZNF146	ENSG00000167635.12	ENST00000456324.5:ENST00000591063.5:ENST00000443387.3:ENST00000586094.5:ENST00000587285.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	32	2	2.65834	3.6707199999999998	4.6831	0.0187418	0.00471288	0.117523	0.0600108
chr21	43073065	43073165	7468142	0	-	0.54	(0.515,0.57]	chr21	761081	4	SS5_PROX	SS5_PROX:INTRON	CBS	ENSG00000160200.18	ENST00000352178.9:ENST00000359624.7:ENST00000398165.8:ENST00000398158.5:ENST00000441030.5:ENST00000470912.5:ENST00000465732.5:ENST00000488526.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	32	2	2.65834	3.6707199999999998	4.6831	0.0187418	0.00471288	0.117523	0.0600108
chrX	152868283	152868383	7737402	0	+	0.53	(0.515,0.57]	chrX	791741	1	SS3_PROX	SS3_PROX:INTRON	NSDHL	ENSG00000147383.11	ENST00000440023.5:ENST00000370274.8	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	2.65834	3.6707199999999998	4.6831	0.0187418	0.00471288	0.117523	0.0600108
chr14	21236960	21237059	5834841	0	-	0.282828	(0.28,0.32]	chr14	554459	1	INTRON	INTRON	HNRNPC	ENSG00000092199.19	ENST00000336053.10:ENST00000553300.6:ENST00000554969.5:ENST00000556142.5:ENST00000554455.5:ENST00000430246.6:ENST00000553753.5:ENST00000555309.5:ENST00000555914.5:ENST00000557442.5:ENST00000556628.5:ENST00000556513.5:ENST00000555883.5:ENST00000557201.5:ENST00000556897.5:ENST00000420743.6:ENST00000554539.5:ENST00000554383.5:ENST00000555215.5:ENST00000555137.5:ENST00000554891.5:ENST00000556226.5:ENST00000555176.5:ENST00000553614.5:ENST00000557336.1:ENST00000557768.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	40	2	2.60656	3.67065	4.73474	0.0256827	0.0162835	0.133676	0.101453
chr15	87346323	87346423	6253010	0	-	0.29	(0.28,0.32]	chr15	596790	191	INTRON	INTRON	ENSG00000259560	ENSG00000259560.2	ENST00000665121.1:ENST00000656130.1	lncRNA	lncRNA	lncRNA	lncRNA	1	40	2	2.60656	3.67065	4.73474	0.0256827	0.0162835	0.133676	0.101453
chr20	17952388	17952486	7320398	0	-	0.316327	(0.28,0.32]	chr20	745304	4	SS5_PROX	SS5_PROX:INTRON	SNX5	ENSG00000089006.17	ENST00000377768.7:ENST00000490175.5:ENST00000483485.5:ENST00000377759.9:ENST00000476648.5:ENST00000431277.5:ENST00000419004.2:ENST00000494401.5:ENST00000474883.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	40	2	2.60656	3.67065	4.73474	0.0256827	0.0162835	0.133676	0.101453
chr3	12641389	12641488	1617204	0	-	0.30303	(0.28,0.32]	chr3	166990	118	INTRON	INTRON	RAF1	ENSG00000132155.14	ENST00000688543.1:ENST00000685348.1:ENST00000251849.9:ENST00000442415.7:ENST00000688444.1:ENST00000692093.1:ENST00000691724.1:ENST00000423275.6:ENST00000687326.1:ENST00000688803.1:ENST00000689876.1:ENST00000686455.1:ENST00000684903.1:ENST00000693312.1:ENST00000690460.1:ENST00000692773.1:ENST00000688625.1:ENST00000693664.1:ENST00000686762.1:ENST00000692311.1:ENST00000692558.1:ENST00000691779.1:ENST00000685738.1:ENST00000690397.1:ENST00000687923.1:ENST00000688269.1:ENST00000693705.1:ENST00000689097.1:ENST00000691899.1:ENST00000689914.1:ENST00000690625.1:ENST00000689389.1:ENST00000687257.1:ENST00000686409.1:ENST00000685653.1:ENST00000689540.1:ENST00000691396.1:ENST00000685437.1:ENST00000689418.1:ENST00000687940.1:ENST00000689481.1:ENST00000491290.2:ENST00000686479.1:ENST00000689033.1:ENST00000692777.1:ENST00000689226.1:ENST00000691718.1:ENST00000692959.1:ENST00000685740.1:ENST00000688753.1:ENST00000688779.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	40	2	2.60656	3.67065	4.73474	0.0256827	0.0162835	0.133676	0.101453
chr4	126584901	126585001	2236558	0	-	0.31	(0.28,0.32]	chr4	219023	1194	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	1	40	2	2.60656	3.67065	4.73474	0.0256827	0.0162835	0.133676	0.101453
chr6	135022966	135023065	3225148	0	-	0.292929	(0.28,0.32]	chr6	299837	198	INTRON	INTRON	HBS1L	ENSG00000112339.15	ENST00000367837.10:ENST00000527578.5:ENST00000415177.6:ENST00000367826.6:ENST00000533274.5:ENST00000526100.5:ENST00000529641.5:ENST00000527507.1:ENST00000314674.7:ENST00000524715.5:ENST00000529882.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	83	2	1.56481	3.670635	5.77646	0.0339805	6.44045e-4	0.146815	0.0231685
chr14	96840817	96840917	5811293	0	+	0.37	(0.35,0.378]	chr14	551019	26	INTRON	INTRON	VRK1	ENSG00000100749.9	ENST00000553683.2:ENST00000680538.1:ENST00000555351.2:ENST00000681195.1:ENST00000681524.1:ENST00000680084.1:ENST00000679533.1:ENST00000681598.1:ENST00000679727.1:ENST00000679758.1:ENST00000680509.1:ENST00000557222.6:ENST00000679977.1:ENST00000680387.1:ENST00000680335.1:ENST00000680683.1:ENST00000681474.1:ENST00000216639.8:ENST00000681363.1:ENST00000681538.1:ENST00000679736.1:ENST00000681176.1:ENST00000680922.1:ENST00000679903.1:ENST00000557352.2:ENST00000681101.1:ENST00000681419.1:ENST00000680348.1:ENST00000679941.1:ENST00000679452.1:ENST00000680849.1:ENST00000679770.1:ENST00000681493.1:ENST00000681778.1:ENST00000680993.1:ENST00000681355.1:ENST00000681695.1:ENST00000681344.1:ENST00000680007.1:ENST00000679918.1:ENST00000681785.1:ENST00000679816.1:ENST00000680756.1:ENST00000681249.1:ENST00000680526.1:ENST00000679365.1:ENST00000680851.1:ENST00000679506.1:ENST00000679650.1:ENST00000679462.1:ENST00000680724.1:ENST00000680339.1:ENST00000680384.1:ENST00000680222.1:ENST00000681077.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	54	2	1.87717	3.6705550000000002	5.46394	0.0555068	2.60035e-4	0.165463	0.014326
chr2	32311425	32311524	730724	0	+	0.292929	(0.28,0.32]	chr2	84268	44	UTR3	UTR3:EXON_MRNA	YIPF4	ENSG00000119820.11	ENST00000238831.9	protein_coding	protein_coding	protein_coding	protein_coding	2	54	2	2.13651	3.6705550000000002	5.2046	0.0265696	0.00448664	0.134088	0.0593175
chr4	2597327	2597427	1913125	0	+	0.3	(0.28,0.32]	chr4	191983	6	INTRON	INTRON	RNF4:FAM193A	ENSG00000063978.16:ENSG00000125386.16	ENST00000508235.1:ENST00000637812.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	54	2	2.13651	3.6705550000000002	5.2046	0.0265696	0.00448664	0.134088	0.0593175
chr19	18520420	18520520	7152998	0	-	0.45	(0.44,0.476]	chr19	722886	446	INTRON	INTRON	ELL	ENSG00000105656.13	ENST00000262809.9:ENST00000594635.6:ENST00000596915.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	35	2	2.58033	3.670505	4.76068	0.0247511	0.00653414	0.131869	0.0699952
chr6	15429737	15429836	2824786	0	+	0.464646	(0.44,0.476]	chr6	265204	190	INTRON	INTRON	JARID2	ENSG00000008083.14	ENST00000341776.7:ENST00000397311.4	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	2.58033	3.670505	4.76068	0.0247511	0.00653414	0.131869	0.0699952
chr16	10386678	10386771	6286280	0	+	0.397849	(0.378,0.408]	chr16	601953	7	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	ATF7IP2	ENSG00000166669.14	ENST00000564797.5:ENST00000396559.5:ENST00000396560.6:ENST00000562527.5:ENST00000561932.5:ENST00000566316.5:ENST00000543967.5:ENST00000562102.6:ENST00000535850.5:ENST00000569900.5:ENST00000569939.5:ENST00000562396.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	108	2	3.18608	3.6704549999999996	4.15483	3.50013e-4	6.54278e-5	0.0166791	0.00715707
chr7	111266497	111266597	3621147	0	-	0.43	(0.408,0.44]	chr7	337093	3026	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	232	2	2.90326	3.670235	4.43721	2.41732e-5	3.71362e-7	0.00385018	3.38876e-4
chr11	77807826	77807925	4995848	0	-	0.424242	(0.408,0.44]	chr11	472047	428	INTRON	INTRON	RSF1	ENSG00000048649.14	ENST00000308488.11:ENST00000528095.5:ENST00000440064.2:ENST00000467567.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	38	2	2.27698	3.670205	5.06343	0.0583528	0.00101725	0.167723	0.0293497
chr15	89304714	89304814	6096373	0	+	0.42	(0.408,0.44]	chr15	580218	9	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	FANCI	ENSG00000140525.20	ENST00000674831.1:ENST00000300027.12:ENST00000310775.12:ENST00000696717.1:ENST00000676003.1:ENST00000696718.1:ENST00000447611.6:ENST00000696719.1:ENST00000565522.5:ENST00000561894.1:ENST00000566895.5:ENST00000696721.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	38	2	2.27698	3.670205	5.06343	0.0583528	0.00101725	0.167723	0.0293497
chr1	16324116	16324216	382336	0	-	0.25	[0,0.28]	chr1	44888	83	INTRON	INTRON	FBXO42	ENSG00000037637.11	ENST00000375592.8	protein_coding	protein_coding	protein_coding	protein_coding	1	47	2	3.13926	3.67016	4.20106	0.0695895	0.00563224	0.184298	0.0678837
chr1	212769572	212769672	634558	0	-	0.38	(0.378,0.408]	chr1	74955	29	INTRON	INTRON	NSL1	ENSG00000117697.15	ENST00000366977.8:ENST00000366978.5:ENST00000366976.3:ENST00000626725.1	protein_coding	protein_coding	protein_coding	protein_coding	2	48	2	2.11103	3.670135	5.22924	0.0266911	0.00172721	0.134419	0.0374701
chr10	45968155	45968254	4608624	0	-	0.292929	(0.28,0.32]	chr10	424513	29	INTRON	INTRON	PARGP1	ENSG00000239883.9	ENST00000688192.1:ENST00000686367.1:ENST00000693310.1:ENST00000417555.2:ENST00000687844.1:ENST00000687550.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	3	72	2	1.64432	3.6700150000000002	5.69571	0.0606133	2.03259e-4	0.171142	0.0124395
chr21	36409273	36409373	7404626	0	+	0.41	(0.408,0.44]	chr21	754470	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CHAF1B	ENSG00000159259.8	ENST00000314103.6:ENST00000481458.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	40	2	3.00595	3.669975	4.334	0.011982	0.00781452	0.0962115	0.0759016
chr19	40239589	40239680	7183271	0	-	0.516484	(0.515,0.57]	chr19	726464	1	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	AKT2	ENSG00000105221.18	ENST00000392038.7:ENST00000424901.5:ENST00000476266.5:ENST00000391844.8:ENST00000584288.5:ENST00000311278.10:ENST00000579047.5:ENST00000578615.6:ENST00000391845.6:ENST00000480878.6:ENST00000578310.1:ENST00000601166.5:ENST00000492463.6:ENST00000537834.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	34	2	3.25412	3.6697499999999996	4.08538	0.0253843	0.00224554	0.12011	0.0435144
chr2	69327870	69327970	1146695	0	-	0.52	(0.515,0.57]	chr2	122428	2	SS5_PROX	SS5_PROX:INTRON	GFPT1	ENSG00000198380.13	ENST00000361060.5:ENST00000357308.9:ENST00000674507.1:ENST00000674438.1	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	3.25412	3.6697499999999996	4.08538	0.0253843	0.00224554	0.12011	0.0435144
chr5	171400299	171400389	2546695	0	+	0.411111	(0.408,0.44]	chr5	243103	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NPM1	ENSG00000181163.14	ENST00000517671.5:ENST00000676613.1:ENST00000678186.1:ENST00000678267.1:ENST00000677297.1:ENST00000521672.6:ENST00000679190.1:ENST00000677467.1:ENST00000678280.1:ENST00000676625.1:ENST00000679006.1:ENST00000351986.10:ENST00000676504.1:ENST00000676589.1:ENST00000677357.1:ENST00000679233.1:ENST00000296930.10:ENST00000393820.2:ENST00000521260.2:ENST00000518587.2:ENST00000678774.1:ENST00000677600.1:ENST00000677741.1:ENST00000677325.1:ENST00000677672.1:ENST00000677907.1:ENST00000677904.1:ENST00000677682.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	47	2	2.14732	3.66967	5.19202	0.0237354	0.0016671	0.129075	0.0369207
chr10	21778000	21778100	4576415	0	-	0.43	(0.408,0.44]	chr10	421894	113	INTRON	INTRON	DNAJC1	ENSG00000136770.11	ENST00000376980.8:ENST00000483085.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	38	2	2.71911	3.6696	4.62009	0.0189489	0.00504155	0.108861	0.0646039
chr17	1836617	1836717	6546044	0	+	0.42	(0.408,0.44]	chr17	634926	61	INTRON	INTRON	RPA1	ENSG00000132383.12	ENST00000571058.5:ENST00000570451.5:ENST00000254719.10	protein_coding	protein_coding	protein_coding	protein_coding	2	49	2	2.73941	3.6696	4.59979	0.0109537	0.002744	0.0873034	0.0484022
chr2	144519838	144519938	1241824	0	-	0.41	(0.408,0.44]	chr2	131787	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ZEB2	ENSG00000169554.23	ENST00000636471.1:ENST00000627532.3:ENST00000419938.5:ENST00000636026.2:ENST00000675069.1:ENST00000689298.1:ENST00000539609.7:ENST00000303660.8:ENST00000637267.2:ENST00000465308.5:ENST00000472146.5:ENST00000476394.5:ENST00000453352.5:ENST00000444559.5:ENST00000465070.5:ENST00000636445.1:ENST00000629520.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	49	2	2.73941	3.6696	4.59979	0.0109537	0.002744	0.0873034	0.0484022
chr22	40809432	40809531	7590280	0	-	0.414141	(0.408,0.44]	chr22	777203	94	INTRON	INTRON	SLC25A17	ENSG00000100372.15	ENST00000544408.5:ENST00000435456.7:ENST00000491545.5:ENST00000263255.10:ENST00000447566.5:ENST00000420970.5:ENST00000430221.5:ENST00000427084.5:ENST00000458600.5:ENST00000443810.5:ENST00000412879.5:ENST00000426396.5:ENST00000434193.5:ENST00000449676.5:ENST00000434185.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	38	2	2.71911	3.6696	4.62009	0.0189489	0.00504155	0.108861	0.0646039
chr22	19355559	19355659	7553642	0	-	0.59	(0.57,1]	chr22	772201	4	SS5_PROX	SS5_PROX:INTRON	HIRA:C22orf39	ENSG00000100084.14:ENSG00000242259.9	ENST00000263208.5:ENST00000340170.8:ENST00000509549.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	43	2	1.71424	3.669575	5.62491	0.0279017	6.73465e-6	0.137011	0.00194394
chr15	66525909	66526007	6050528	0	+	0.489796	(0.476,0.515]	chr15	576158	18	INTRON	INTRON	ZWILCH	ENSG00000174442.12	ENST00000535141.6:ENST00000613446.4:ENST00000446801.6:ENST00000565627.5:ENST00000307897.10:ENST00000561583.5:ENST00000562645.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	37	2	2.48527	3.66953	4.85379	0.03496	0.00234214	0.13747500000000001	0.0442989
chr17	4350975	4351075	6712209	0	-	0.48	(0.476,0.515]	chr17	657734	53	INTRON	INTRON	UBE2G1	ENSG00000132388.13	ENST00000396981.7:ENST00000572484.5:ENST00000574633.5:ENST00000571980.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	37	2	2.48527	3.66953	4.85379	0.03496	0.00234214	0.13747500000000001	0.0442989
chr22	41626137	41626235	7524232	0	+	0.5	(0.476,0.515]	chr22	769061	37	INTRON	INTRON	XRCC6	ENSG00000196419.13	ENST00000428575.6:ENST00000464116.2:ENST00000402580.7:ENST00000360079.8:ENST00000359308.8:ENST00000405878.5:ENST00000405506.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	37	2	2.48527	3.66953	4.85379	0.03496	0.00234214	0.13747500000000001	0.0442989
chr5	60670297	60670397	2627215	0	-	0.48	(0.476,0.515]	chr5	249590	223	INTRON	INTRON	DEPDC1B	ENSG00000035499.13	ENST00000265036.10:ENST00000453022.6:ENST00000512078.5:ENST00000512452.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	37	2	2.48527	3.66953	4.85379	0.03496	0.00234214	0.13747500000000001	0.0442989
chr22	21839332	21839432	7561103	0	-	0.42	(0.408,0.44]	chr22	773388	311	INTRON	INTRON	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	12	363	2	3.05307	3.669475	4.28588	7.64342e-6	5.07693e-9	0.00207924	2.30841e-5
chr21	10439652	10439752	7368391	0	+	0.51	(0.476,0.515]	chr21	751975	244	INTRON	INTRON	BAGE2	ENSG00000187172.15	ENST00000474011.5:ENST00000470054.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	1	37	2	2.56033	3.6694449999999996	4.77856	0.0287634	0.00305743	0.127066	0.0509893
chr21	38010477	38010547	7462985	0	-	0.485714	(0.476,0.515]	chr21	760276	1	EXON_LNCRNA	EXON_LNCRNA:INTRON	DSCR4:DSCR4-IT1	ENSG00000184029.9:ENSG00000223608.1	ENST00000398948.5:ENST00000417138.1	lncRNA	lncRNA	lncRNA	lncRNA	1	37	2	2.56033	3.6694449999999996	4.77856	0.0287634	0.00305743	0.127066	0.0509893
chr4	73193711	73193811	2160175	0	-	0.51	(0.476,0.515]	chr4	212794	158	INTRON	INTRON	ANKRD17	ENSG00000132466.20	ENST00000358602.9:ENST00000558247.5:ENST00000330838.10:ENST00000509867.6:ENST00000561029.1:ENST00000559367.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	37	2	2.56033	3.6694449999999996	4.77856	0.0287634	0.00305743	0.127066	0.0509893
chr1	226064565	226064651	327787	0	+	0.22093	[0,0.28]	chr1	37747	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	H3-3A	ENSG00000163041.13	ENST00000366816.5:ENST00000366814.3:ENST00000366815.10:ENST00000653960.1:ENST00000655399.1:ENST00000667897.1:ENST00000656829.1:ENST00000666609.1:ENST00000661429.1:ENST00000366813.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	81	2	1.71089	3.66941	5.62793	0.0318277	0.0022037	0.14477	0.0417893
chr9	132354616	132354716	4367167	0	-	0.6	(0.57,1]	chr9	401515	3	SS5_PROX	SS5_PROX:INTRON	SETX	ENSG00000107290.14	ENST00000224140.6	protein_coding	protein_coding	protein_coding	protein_coding	1	24	2	2.66438	3.6694050000000002	4.67443	0.0171563	8.07515e-4	0.104099	0.0258804
chr12	122103460	122103560	5240109	0	+	0.46	(0.44,0.476]	chr12	497496	238	INTRON	INTRON	MLXIP	ENSG00000175727.14	ENST00000319080.12	protein_coding	protein_coding	protein_coding	protein_coding	2	77	2	3.4718	3.6692	3.8666	0.00136358	1.50865e-4	0.0336321	0.0106137
chr19	5618064	5618162	7124316	0	-	0.530612	(0.515,0.57]	chr19	717040	12	INTRON	INTRON	SAFB2	ENSG00000130254.12	ENST00000252542.9:ENST00000591120.1:ENST00000590262.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	46	2	2.48902	3.66919	4.84936	0.00760558	0.00146032	0.0749571	0.0349875
chr6	167887414	167887514	3034948	0	+	0.38	(0.378,0.408]	chr6	282743	65	INTRON	INTRON	AFDN	ENSG00000130396.21	ENST00000683244.1:ENST00000351017.9:ENST00000344191.8:ENST00000392112.5:ENST00000392108.7:ENST00000400822.7:ENST00000447894.6:ENST00000366809.6:ENST00000366806.6:ENST00000423229.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	36	2	2.92665	3.6691700000000003	4.41169	0.0199606	0.0086017	0.109608	0.083729
chr8	18057340	18057436	3921393	0	-	0.40625	(0.378,0.408]	chr8	358785	15	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ASAH1	ENSG00000104763.20	ENST00000637790.2:ENST00000636009.1:ENST00000520781.6:ENST00000381733.9:ENST00000637991.1:ENST00000637752.1:ENST00000637528.1:ENST00000636691.1:ENST00000637609.1:ENST00000637922.1:ENST00000636171.1:ENST00000636701.1:ENST00000636050.1:ENST00000638069.1:ENST00000636160.1:ENST00000637343.1:ENST00000637244.1:ENST00000636563.1:ENST00000637857.1:ENST00000637014.1:ENST00000518746.2:ENST00000638028.1:ENST00000635756.1:ENST00000636577.1:ENST00000637095.1:ENST00000636494.1:ENST00000637636.1:ENST00000637429.1:ENST00000637013.1:ENST00000637484.1:ENST00000636128.1:ENST00000636920.1:ENST00000635998.1:ENST00000635944.1:ENST00000636033.1:ENST00000636997.1:ENST00000636815.1:ENST00000636455.1:ENST00000314146.10	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	36	2	2.92665	3.6691700000000003	4.41169	0.0199606	0.0086017	0.109608	0.083729
chr17	49344108	49344208	6792370	0	-	0.58	(0.57,1]	chr17	670175	212	INTRON	INTRON	ZNF652	ENSG00000198740.9	ENST00000430262.3:ENST00000508237.5:ENST00000362063.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	24	2	2.89463	3.6691450000000003	4.44366	0.00788262	0.00210922	0.076155	0.0425419
chr21	18733025	18733125	7435133	0	-	0.58	(0.57,1]	chr21	758112	1204	INTRON	INTRON	MIR548XHG	ENSG00000224141.6	ENST00000671206.1:ENST00000437492.6:ENST00000355189.7:ENST00000653218.1:ENST00000656413.1:ENST00000414582.1	lncRNA	lncRNA	lncRNA	lncRNA	1	24	2	2.89463	3.6691450000000003	4.44366	0.00788262	0.00210922	0.076155	0.0425419
chr1	235241149	235241249	662987	0	-	0.32	(0.28,0.32]	chr1	78522	3	INTRON	INTRON	ARID4B	ENSG00000054267.22	ENST00000349213.7:ENST00000366603.6:ENST00000264183.9:ENST00000421364.5:ENST00000491632.5:ENST00000418304.1:ENST00000466653.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	40	2	2.67453	3.66906	4.66359	0.021289	0.0193496	0.123318	0.108861
chr10	101781324	101781401	4680584	0	-	0.311688	(0.28,0.32]	chr10	431909	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	NPM3	ENSG00000107833.10	ENST00000370110.5:ENST00000474993.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	40	2	2.67453	3.66906	4.66359	0.021289	0.0193496	0.123318	0.108861
chr12	24911066	24911166	5297532	0	-	0.3	(0.28,0.32]	chr12	503884	81	INTRON	INTRON	BCAT1	ENSG00000060982.15	ENST00000261192.12:ENST00000342945.9:ENST00000539780.5:ENST00000546285.1	protein_coding	protein_coding	protein_coding	protein_coding	1	40	2	2.67453	3.66906	4.66359	0.021289	0.0193496	0.123318	0.108861
chr3	101370907	101371007	1757147	0	-	0.29	(0.28,0.32]	chr3	178305	25	INTRON	INTRON	SENP7	ENSG00000138468.16	ENST00000394095.7:ENST00000314261.11:ENST00000394094.6:ENST00000394091.5:ENST00000348610.3	protein_coding	protein_coding	protein_coding	protein_coding	1	40	2	2.67453	3.66906	4.66359	0.021289	0.0193496	0.123318	0.108861
chr7	65397343	65397442	3322689	0	+	0.313131	(0.28,0.32]	chr7	308935	81	INTRON	INTRON	ZNF92	ENSG00000146757.14	ENST00000357512.3:ENST00000431504.1:ENST00000328747.12:ENST00000450302.2	protein_coding	protein_coding	protein_coding	protein_coding	1	40	2	2.67453	3.66906	4.66359	0.021289	0.0193496	0.123318	0.108861
chr15	85089416	85089516	6090013	0	+	0.28	[0,0.28]	chr15	579539	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	PDE8A	ENSG00000073417.15	ENST00000310298.8:ENST00000557957.5:ENST00000394553.6:ENST00000339708.9:ENST00000478717.5:ENST00000485596.5:ENST00000559742.5:ENST00000559086.5:ENST00000560789.5:ENST00000557819.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	148	2	3.25086	3.6689100000000003	4.08696	4.54073e-4	2.58504e-4	0.0192381	0.0148796
chr1	50538111	50538209	448018	0	-	0.285714	(0.28,0.32]	chr1	54183	23	INTRON	INTRON	FAF1	ENSG00000185104.21	ENST00000396153.7:ENST00000494400.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	40	2	2.53522	3.668885	4.80255	0.0310424	0.0137406	0.143457	0.0949306
chr16	22439635	22439734	6321963	0	+	0.292929	(0.28,0.32]	chr16	605299	15	INTRON	INTRON	SMG1P1	ENSG00000237296.10	ENST00000446662.5:ENST00000381231.5:ENST00000309865.11:ENST00000691795.1:ENST00000308347.10:ENST00000687936.1:ENST00000691423.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	1	40	2	2.53522	3.668885	4.80255	0.0310424	0.0137406	0.143457	0.0949306
chr17	82857418	82857518	6695270	0	+	0.31	(0.28,0.32]	chr17	654911	109	INTRON	INTRON	TBCD	ENSG00000141556.22	ENST00000682479.1:ENST00000682722.1:ENST00000684464.1:ENST00000684544.1:ENST00000681983.1:ENST00000684361.1:ENST00000683184.1:ENST00000683282.1:ENST00000684408.1:ENST00000355528.9:ENST00000683444.1:ENST00000684776.1:ENST00000683041.1:ENST00000684760.1:ENST00000684349.1:ENST00000682213.1:ENST00000683009.1:ENST00000682921.1:ENST00000539345.6:ENST00000684000.1:ENST00000684188.1:ENST00000684429.1:ENST00000682610.1:ENST00000683821.1:ENST00000682654.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	40	2	2.53522	3.668885	4.80255	0.0310424	0.0137406	0.143457	0.0949306
chr2	171095000	171095100	1263438	0	-	0.29	(0.28,0.32]	chr2	133913	33	INTRON	INTRON	TLK1	ENSG00000198586.14	ENST00000431350.7:ENST00000360843.7:ENST00000359766.7:ENST00000521943.5:ENST00000409443.6:ENST00000413010.5:ENST00000470340.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	40	2	2.53522	3.668885	4.80255	0.0310424	0.0137406	0.143457	0.0949306
chr16	89428672	89428771	6542982	0	-	0.515152	(0.476,0.515]	chr16	634275	66	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	51	2	1.79693	3.66877	5.54061	0.0649782	1.30462e-4	0.179417	0.00983066
chr1	185099022	185099111	276099	0	+	0.494382	(0.476,0.515]	chr1	32288	3	INTRON	INTRON	RNF2	ENSG00000121481.11	ENST00000367509.8:ENST00000367510.8	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	2.80729	3.6687600000000002	4.53023	0.0126008	0.0119748	0.0980703	0.0899583
chr13	95291265	95291364	5639778	0	-	0.484848	(0.476,0.515]	chr13	537181	215	INTRON	INTRON	ABCC4	ENSG00000125257.16	ENST00000645237.2:ENST00000643051.1:ENST00000643842.1:ENST00000646439.1:ENST00000643816.1:ENST00000536256.3:ENST00000643556.1:ENST00000629385.1:ENST00000642524.1:ENST00000645532.1:ENST00000644471.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	35	2	2.80729	3.6687600000000002	4.53023	0.0126008	0.0119748	0.0980703	0.0899583
chr16	8899944	8900037	6442083	0	-	0.494624	(0.476,0.515]	chr16	620462	3	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	USP7	ENSG00000187555.16	ENST00000673704.1:ENST00000344836.9:ENST00000563961.5:ENST00000381886.8:ENST00000565455.5:ENST00000563085.5:ENST00000563043.1:ENST00000562051.1:ENST00000567692.1:ENST00000569448.1:ENST00000566131.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	35	2	2.80729	3.6687600000000002	4.53023	0.0126008	0.0119748	0.0980703	0.0899583
chr19	45520046	45520143	7080326	0	+	0.505155	(0.476,0.515]	chr19	708221	16	INTRON	INTRON	VASP	ENSG00000125753.14	ENST00000245932.11:ENST00000592139.1:ENST00000590603.1:ENST00000586014.5:ENST00000586619.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	35	2	2.80729	3.6687600000000002	4.53023	0.0126008	0.0119748	0.0980703	0.0899583
chr12	104517892	104517992	5211293	0	+	0.48	(0.476,0.515]	chr12	493315	600	INTRON	INTRON	CHST11	ENSG00000171310.11	ENST00000303694.6:ENST00000547956.1:ENST00000549260.5:ENST00000546689.1	protein_coding	protein_coding	protein_coding	protein_coding	2	50	2	2.21677	3.6687450000000004	5.12072	0.0207026	8.42139e-4	0.110999	0.0263691
chr7	90372428	90372528	3347521	0	+	0.48	(0.476,0.515]	chr7	311999	2	SS5_PROX	SS5_PROX:INTRON	GTPBP10	ENSG00000105793.16	ENST00000453512.5:ENST00000421719.5:ENST00000426366.5:ENST00000450619.5:ENST00000257659.12:ENST00000417207.5:ENST00000380058.7:ENST00000222511.11:ENST00000439832.5:ENST00000474503.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	50	2	2.21677	3.6687450000000004	5.12072	0.0207026	8.42139e-4	0.110999	0.0263691
chr19	4259318	4259417	7001655	0	+	0.626263	(0.57,1]	chr19	694486	5	INTRON	INTRON	YJU2	ENSG00000105248.16	ENST00000262962.12	protein_coding	protein_coding	protein_coding	protein_coding	2	32	2	2.66305	3.66874	4.67443	0.00327879	8.07515e-4	0.0509077	0.0258804
chr1	108304299	108304398	176678	0	+	0.50505	(0.476,0.515]	chr1	19153	196	INTRON	INTRON	SLC25A24P1	ENSG00000241361.8	ENST00000411846.6:ENST00000434803.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	2	49	2	1.8388	3.668735	5.49867	0.0564473	4.28561e-4	0.184423	0.0189958
chr16	85255662	85255762	6412385	0	+	0.53	(0.515,0.57]	chr16	615455	704	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	2	45	2	2.08547	3.66865	5.25183	0.0289426	2.6074e-4	0.1274	0.014326
chr19	5070617	5070715	7004441	0	+	0.55102	(0.515,0.57]	chr19	694837	1	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	KDM4B	ENSG00000127663.15	ENST00000159111.9:ENST00000611640.4:ENST00000381759.8:ENST00000536461.5:ENST00000592175.5:ENST00000589104.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	45	2	2.08547	3.66865	5.25183	0.0289426	2.6074e-4	0.1274	0.014326
chr5	131762761	131762860	2720402	0	-	0.343434	(0.32,0.35]	chr5	255730	177	INTRON	INTRON	FNIP1	ENSG00000217128.13	ENST00000510461.6:ENST00000307954.12:ENST00000307968.11:ENST00000511848.1	protein_coding	protein_coding	protein_coding	protein_coding	3	65	2	2.43956	3.66862	4.89768	0.00793135	0.00352597	0.076155	0.0546236
chr14	52780084	52780178	5895131	0	-	0.553191	(0.515,0.57]	chr14	559859	13	INTRON	INTRON	GNPNAT1	ENSG00000100522.10	ENST00000216410.8:ENST00000650397.1:ENST00000554230.5:ENST00000557604.1	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	2.34087	3.6686099999999997	4.99635	0.0469761	8.06602e-4	0.151917	0.0258804
chr2	216061044	216061142	1328207	0	-	0.530612	(0.515,0.57]	chr2	138963	17	INTRON	INTRON	PECR	ENSG00000115425.14	ENST00000442122.5:ENST00000265322.8:ENST00000461330.5:ENST00000497889.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	34	2	2.34087	3.6686099999999997	4.99635	0.0469761	8.06602e-4	0.151917	0.0258804
chr7	129930831	129930930	3637751	0	-	0.525253	(0.515,0.57]	chr7	338226	49	INTRON	INTRON	UBE2H	ENSG00000186591.13	ENST00000355621.8:ENST00000649897.1:ENST00000473814.6:ENST00000496698.5:ENST00000472396.5:ENST00000480245.5:ENST00000490974.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	34	2	2.34087	3.6686099999999997	4.99635	0.0469761	8.06602e-4	0.151917	0.0258804
chrX	154363521	154363621	7913690	0	-	0.55	(0.515,0.57]	chrX	805775	1	SS5_PROX	SS5_PROX:INTRON	FLNA	ENSG00000196924.19	ENST00000420627.5:ENST00000422373.6:ENST00000360319.9:ENST00000369856.8:ENST00000369850.10:ENST00000676696.1:ENST00000610817.5:ENST00000673639.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	34	2	2.34087	3.6686099999999997	4.99635	0.0469761	8.06602e-4	0.151917	0.0258804
chr2	107696638	107696738	1205514	0	-	0.36	(0.35,0.378]	chr2	128516	455	INTRON	INTRON	LINC01885	ENSG00000237880.2	ENST00000654481.1	lncRNA	lncRNA	lncRNA	lncRNA	6	217	2	3.58468	3.66854	3.7524	1.62635e-5	2.17936e-6	0.0032483	9.20638e-4
chr9	91862268	91862368	4284385	0	-	0.57	(0.515,0.57]	chr9	393909	861	INTRON	INTRON	ROR2	ENSG00000169071.15	ENST00000375715.5:ENST00000375708.4:ENST00000550066.5:ENST00000495386.5:ENST00000546883.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	106	2	3.09963	3.668525	4.23742	9.06736e-5	2.14737e-5	0.00796627	0.00377331
chr17	32352611	32352711	6598005	0	+	0.35	(0.32,0.35]	chr17	641893	3	INTRON	INTRON	ZNF207	ENSG00000010244.19	ENST00000321233.10:ENST00000394673.6:ENST00000394670.9:ENST00000579634.5:ENST00000580759.5:ENST00000342555.10:ENST00000577908.5:ENST00000394679.9:ENST00000582165.1:ENST00000577324.1:ENST00000578918.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	119	2	3.36317	3.6684900000000003	3.97381	2.19875e-4	1.69213e-4	0.0135522	0.0112853
chr1	19231422	19231521	387010	0	-	0.494949	(0.476,0.515]	chr1	46181	1	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	EMC1	ENSG00000127463.16	ENST00000477853.6:ENST00000688219.1:ENST00000690732.1:ENST00000690451.1:ENST00000688667.1:ENST00000685099.1:ENST00000685594.1:ENST00000690823.1:ENST00000692207.1:ENST00000688332.1:ENST00000693007.1:ENST00000688918.1:ENST00000375199.7:ENST00000375208.7:ENST00000486405.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	35	2	2.56868	3.668475	4.76827	0.0256676	0.00600704	0.133676	0.0674604
chr10	68731675	68731775	4442370	0	+	0.48	(0.476,0.515]	chr10	409595	87	INTRON	INTRON	CCAR1	ENSG00000060339.14	ENST00000536391.5:ENST00000630771.2:ENST00000538031.5:ENST00000543719.5:ENST00000541012.5:ENST00000265872.11:ENST00000539539.5:ENST00000543229.5:ENST00000536012.5:ENST00000543225.5:ENST00000494903.2:ENST00000540210.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	35	2	2.56868	3.668475	4.76827	0.0256676	0.00600704	0.133676	0.0674604
chr18	22962707	22962807	6882864	0	+	0.48	(0.476,0.515]	chr18	682066	126	INTRON	INTRON	RBBP8	ENSG00000101773.19	ENST00000582354.5:ENST00000581819.5:ENST00000327155.10:ENST00000399722.6:ENST00000399725.6:ENST00000399721.6:ENST00000360790.9	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	2.56868	3.668475	4.76827	0.0256676	0.00600704	0.133676	0.0674604
chr3	99924520	99924620	1462967	0	+	0.51	(0.476,0.515]	chr3	153488	1061	INTRON	INTRON	CMSS1	ENSG00000184220.12	ENST00000463526.1:ENST00000421999.8:ENST00000491299.5:ENST00000496116.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	35	2	2.56868	3.668475	4.76827	0.0256676	0.00600704	0.133676	0.0674604
chr6	33398587	33398687	2847008	0	+	0.49	(0.476,0.515]	chr6	268656	2	SS5_PROX	SS5_PROX:INTRON	KIFC1	ENSG00000237649.8	ENST00000428849.7:ENST00000450504.1	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	2.56868	3.668475	4.76827	0.0256676	0.00600704	0.133676	0.0674604
chrX	45061620	45061713	7650505	0	+	0.494624	(0.476,0.515]	chrX	782803	2	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000675440.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000621147.5:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1:ENST00000675525.1:ENST00000414389.5:ENST00000675546.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	35	2	2.56868	3.668475	4.76827	0.0256676	0.00600704	0.133676	0.0674604
chr1	1800446	1800545	361921	0	-	0.40404	(0.378,0.408]	chr1	42263	64	INTRON	INTRON	GNB1	ENSG00000078369.18	ENST00000610897.4:ENST00000615252.4:ENST00000378609.9:ENST00000471354.1:ENST00000439272.6:ENST00000434686.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	36	2	2.45932	3.66847	4.87762	0.0346754	0.00553849	0.148144	0.0648867
chr11	68118691	68118791	4972570	0	-	0.4	(0.378,0.408]	chr11	469439	212	INTRON	INTRON	CHKA	ENSG00000110721.12	ENST00000265689.9:ENST00000356135.9:ENST00000531341.1	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	2.45932	3.66847	4.87762	0.0346754	0.00553849	0.148144	0.0648867
chr7	128808045	128808135	3408915	0	+	0.555556	(0.515,0.57]	chr7	318519	1	INTRON	INTRON	CCDC136	ENSG00000128596.17	ENST00000378685.8:ENST00000464832.5:ENST00000297788.9:ENST00000487361.5:ENST00000480137.1:ENST00000494552.5:ENST00000528772.1:ENST00000464672.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	34	2	2.23241	3.6684449999999997	5.10448	0.0581268	0.0010345	0.188651	0.029231300000000002
chr11	68487177	68487277	4817597	0	+	0.32	(0.28,0.32]	chr11	448907	260	INTRON	INTRON	PPP6R3	ENSG00000110075.15	ENST00000530427.5:ENST00000528635.5:ENST00000529907.5:ENST00000533127.5:ENST00000534534.5:ENST00000529344.5:ENST00000524845.5:ENST00000393800.7:ENST00000265637.8:ENST00000524904.5:ENST00000393801.7:ENST00000265636.9:ENST00000529710.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	45	2	2.73077	3.6684349999999997	4.6061	0.0220748	0.0102724	0.115395	0.089002
chr1	37980385	37980485	426435	0	-	0.43	(0.408,0.44]	chr1	51710	4	SS5_PROX	SS5_PROX:INTRON	SF3A3	ENSG00000183431.12	ENST00000373019.5:ENST00000489537.5:ENST00000461869.5:ENST00000470585.5:ENST00000488934.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	52	2	2.40661	3.668425	4.93024	0.011475	0.00170369	0.0888882	0.0381936
chr12	62557666	62557764	5152098	0	+	0.295918	(0.28,0.32]	chr12	487597	11	INTRON	INTRON	MON2	ENSG00000061987.16	ENST00000641654.1:ENST00000546600.5:ENST00000393630.8:ENST00000547095.5:ENST00000552738.5:ENST00000393629.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	102	2	1.7781	3.668275	5.55845	0.00932885	0.00141854	0.0856412	0.0340865
chr1	245824510	245824610	673867	0	-	0.5	(0.476,0.515]	chr1	79669	97	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000366517.5:ENST00000366516.5:ENST00000490107.6:ENST00000470510.5:ENST00000483072.5:ENST00000493441.5:ENST00000488153.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	51	2	2.41121	3.6682500000000005	4.92529	0.0110342	0.00180221	0.0873897	0.0392772
chr12	121292957	121293056	5436662	0	-	0.50505	(0.476,0.515]	chr12	519827	88	INTRON	INTRON	CAMKK2	ENSG00000110931.19	ENST00000652382.1:ENST00000404169.8:ENST00000324774.9:ENST00000347034.6:ENST00000538733.5:ENST00000337174.7:ENST00000412367.6:ENST00000402834.8:ENST00000392473.2:ENST00000446440.6:ENST00000535524.1:ENST00000543477.1:ENST00000544485.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	51	2	2.41121	3.6682500000000005	4.92529	0.0110342	0.00180221	0.0873897	0.0392772
chr1	31916287	31916387	414213	0	-	0.41	(0.408,0.44]	chr1	49902	3	SS3_PROX	SS3_PROX:INTRON	ENSG00000269967:PTP4A2	ENSG00000269967.1:ENSG00000184007.22	ENST00000602889.1:ENST00000647444.2:ENST00000602725.5:ENST00000649841.1:ENST00000457805.6:ENST00000602683.5:ENST00000470404.5:ENST00000532001.6:ENST00000528253.3:ENST00000484483.1:ENST00000468531.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA	1	35	2	2.82042	3.6682300000000003	4.51604	0.0137419	0.0120121	0.0962115	0.0949306
chr12	62884269	62884368	5349578	0	-	0.424242	(0.408,0.44]	chr12	511235	335	INTRON	INTRON	PPM1H	ENSG00000111110.12	ENST00000228705.7:ENST00000548414.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	35	2	2.82042	3.6682300000000003	4.51604	0.0137419	0.0120121	0.0962115	0.0949306
chr15	65764788	65764886	6209518	0	-	0.428571	(0.408,0.44]	chr15	592611	30	INTRON	INTRON	DENND4A	ENSG00000174485.16	ENST00000443035.8:ENST00000431932.6:ENST00000564674.5:ENST00000568515.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	35	2	2.82042	3.6682300000000003	4.51604	0.0137419	0.0120121	0.0962115	0.0949306
chr16	69602720	69602820	6380377	0	+	0.43	(0.408,0.44]	chr16	613167	338	INTRON	INTRON	NFAT5	ENSG00000102908.22	ENST00000426654.6:ENST00000349945.7:ENST00000354436.6:ENST00000627621.3:ENST00000650987.1:ENST00000567990.5:ENST00000567239.5:ENST00000393742.7:ENST00000565301.2:ENST00000566899.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	35	2	2.82042	3.6682300000000003	4.51604	0.0137419	0.0120121	0.0962115	0.0949306
chr17	75970136	75970236	6839781	0	-	0.41	(0.408,0.44]	chr17	676367	94	INTRON	INTRON	ACOX1	ENSG00000161533.12	ENST00000293217.10:ENST00000572047.5:ENST00000573078.5:ENST00000301608.8:ENST00000591857.5:ENST00000588176.5:ENST00000589301.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	35	2	2.82042	3.6682300000000003	4.51604	0.0137419	0.0120121	0.0962115	0.0949306
chr3	5178263	5178363	1354144	0	+	0.44	(0.408,0.44]	chr3	142392	2	SS3_PROX	SS3_PROX:INTRON	ARL8B	ENSG00000134108.14	ENST00000256496.8:ENST00000455168.5:ENST00000419534.2:ENST00000468010.1:ENST00000476343.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	35	2	2.82042	3.6682300000000003	4.51604	0.0137419	0.0120121	0.0962115	0.0949306
chr8	90362666	90362766	3793722	0	+	0.43	(0.408,0.44]	chr8	351792	106	INTRON	INTRON	LINC00534	ENSG00000253394.7	ENST00000662145.1:ENST00000655523.1:ENST00000517400.6:ENST00000658299.1:ENST00000663329.1:ENST00000658342.1:ENST00000523283.6:ENST00000655219.1:ENST00000662692.1:ENST00000667296.1:ENST00000667565.1:ENST00000523406.2:ENST00000659030.1:ENST00000653734.1:ENST00000654785.1:ENST00000524361.5:ENST00000668745.1:ENST00000661519.1:ENST00000671657.1:ENST00000655123.1:ENST00000663098.1:ENST00000670903.1:ENST00000654946.1	lncRNA	lncRNA	lncRNA	lncRNA	1	35	2	2.82042	3.6682300000000003	4.51604	0.0137419	0.0120121	0.0962115	0.0949306
chr2	101003308	101003395	835648	0	+	0.517241	(0.515,0.57]	chr2	93823	1	INTRON	INTRON	RPL31	ENSG00000071082.11	ENST00000409000.5:ENST00000409028.8:ENST00000264258.8:ENST00000409038.5:ENST00000409650.5:ENST00000409733.5:ENST00000409320.7:ENST00000419276.1:ENST00000409711.1:ENST00000456292.5:ENST00000441435.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	150	2	3.55467	3.6681850000000003	3.7817	3.43577e-5	1.59173e-6	0.0046762	8.36186e-4
chr9	137789328	137789420	4225215	0	+	0.619565	(0.57,1]	chr9	388324	1	INTRON	INTRON	EHMT1	ENSG00000181090.21	ENST00000371394.6:ENST00000460843.6:ENST00000636027.1:ENST00000637161.1:ENST00000637261.1:ENST00000462942.3:ENST00000637891.1:ENST00000637949.1:ENST00000493484.5:ENST00000482340.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	31	2	2.73474	3.6681749999999997	4.60161	0.00241874	0.00142229	0.0454275	0.0340865
chr4	78867408	78867507	1982312	0	+	0.474747	(0.44,0.476]	chr4	198529	13	INTRON	INTRON	BMP2K	ENSG00000138756.19	ENST00000389010.7:ENST00000502613.3:ENST00000502871.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	65	2	2.08453	3.66816	5.25179	0.00689	0.00124521	0.0750118	0.0322969
chr14	102662600	102662700	5823233	0	+	0.54	(0.515,0.57]	chr14	552490	689	INTRON	INTRON	RCOR1	ENSG00000089902.10	ENST00000262241.7	protein_coding	protein_coding	protein_coding	protein_coding	2	67	2	3.66151	3.66802	3.67453	4.49566e-4	3.27949e-4	0.0196044	0.0160995
chr7	1840358	1840458	3462989	0	-	0.53	(0.515,0.57]	chr7	323973	108	INTRON	INTRON	MAD1L1	ENSG00000002822.16	ENST00000481633.1:ENST00000406869.5:ENST00000399654.6:ENST00000402746.5:ENST00000265854.12:ENST00000450235.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	34	2	2.83501	3.6680149999999996	4.50102	0.0117686	0.00510768	0.0894475	0.0646039
chr7	71942169	71942269	3545951	0	-	0.52	(0.515,0.57]	chr7	330461	1313	INTRON	INTRON	CALN1	ENSG00000183166.11	ENST00000395276.6:ENST00000395275.7:ENST00000329008.9:ENST00000431984.5	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	2.83501	3.6680149999999996	4.50102	0.0117686	0.00510768	0.0894475	0.0646039
chr8	94985871	94985970	3801652	0	+	0.525253	(0.515,0.57]	chr8	352522	18	INTRON	INTRON	NDUFAF6	ENSG00000156170.13	ENST00000523378.5:ENST00000396113.5:ENST00000519136.5:ENST00000396111.6:ENST00000521840.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	34	2	2.83501	3.6680149999999996	4.50102	0.0117686	0.00510768	0.0894475	0.0646039
chr22	21841531	21841631	7561125	0	-	0.42	(0.408,0.44]	chr22	773388	333	INTRON	INTRON	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	6	191	2	3.17265	3.6679749999999998	4.1633	4.1906800000000003e-05	8.33483e-7	0.00549623	5.1809e-4
chr11	57738026	57738106	4792874	0	+	0.375	(0.35,0.378]	chr11	443665	1	EXON_MRNA	EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ENSG00000288534:TMX2	ENSG00000288534.1:ENSG00000213593.10	ENST00000673781.1:ENST00000673810.1:ENST00000278422.9:ENST00000674116.1:ENST00000524972.5:ENST00000378312.8:ENST00000530114.5:ENST00000525035.5:ENST00000529403.1:ENST00000528110.5:ENST00000533602.5:ENST00000528042.1:ENST00000674060.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	40	2	2.24535	3.667935	5.09052	0.0647516	0.00123501	0.179192	0.0326215
chr8	9031880	9031977	3695856	0	+	0.515464	(0.515,0.57]	chr8	342942	20	UTR3	UTR3:EXON_MRNA:INTRON	ERI1	ENSG00000104626.15	ENST00000519292.5:ENST00000250263.8:ENST00000520332.5:ENST00000518663.1:ENST00000522612.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	143	2	3.49756	3.6678949999999997	3.83823	1.07554e-5	5.43165e-6	0.0025835	0.00161653
chr1	35362685	35362784	69234	0	+	0.424242	(0.408,0.44]	chr1	8749	5	INTRON	INTRON	ZMYM4	ENSG00000146463.12	ENST00000314607.11:ENST00000457946.1:ENST00000482131.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	35	2	2.58179	3.667885	4.75398	0.024638	0.00703931	0.131869	0.0718189
chr1	180461814	180461913	595425	0	-	0.414141	(0.408,0.44]	chr1	71198	312	INTRON	INTRON	ACBD6	ENSG00000230124.8	ENST00000645415.1:ENST00000642319.1:ENST00000367595.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	35	2	2.58179	3.667885	4.75398	0.024638	0.00703931	0.131869	0.0718189
chr14	49603151	49603251	5715614	0	+	0.42	(0.408,0.44]	chr14	542704	2	SS3_PROX	SS3_PROX:INTRON	LRR1	ENSG00000165501.17	ENST00000318317.8:ENST00000554869.5:ENST00000298288.11:ENST00000540712.1:ENST00000557531.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	35	2	2.58179	3.667885	4.75398	0.024638	0.00703931	0.131869	0.0718189
chr22	20774692	20774792	7558823	0	-	0.41	(0.408,0.44]	chr22	773112	86	INTRON	INTRON	PI4KA	ENSG00000241973.11	ENST00000255882.11:ENST00000466162.5:ENST00000484220.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	35	2	2.58179	3.667885	4.75398	0.024638	0.00703931	0.131869	0.0718189
chr9	131213442	131213540	4216537	0	+	0.428571	(0.408,0.44]	chr9	386674	9	EXON_MRNA	EXON_MRNA:INTRON	NUP214	ENSG00000126883.19	ENST00000695497.1:ENST00000695498.1:ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000524578.6:ENST00000453861.6:ENST00000483497.6:ENST00000695500.1:ENST00000650694.1:ENST00000695501.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	35	2	2.58179	3.667885	4.75398	0.024638	0.00703931	0.131869	0.0718189
chr7	107460424	107460524	3611989	0	-	0.32	(0.28,0.32]	chr7	336694	474	INTRON	INTRON	COG5	ENSG00000164597.15	ENST00000297135.9:ENST00000347053.8:ENST00000393603.7:ENST00000484237.5:ENST00000475638.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	65	2	1.85772	3.6677549999999997	5.47779	0.0300199	0.00187048	0.142135	0.0390476
chr7	64905408	64905507	3321109	0	+	0.363636	(0.35,0.378]	chr7	308781	16	INTRON	INTRON	ZNF273	ENSG00000198039.12	ENST00000527278.5:ENST00000489672.5:ENST00000476120.2:ENST00000395375.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	41	2	3.36514	3.6677299999999997	3.97032	0.0578667	0.00173699	0.167723	0.03851
chr1	236560627	236560724	665293	0	-	0.546392	(0.515,0.57]	chr1	78806	4	INTRON	INTRON	HEATR1	ENSG00000119285.11	ENST00000366582.8:ENST00000366581.6	protein_coding	protein_coding	protein_coding	protein_coding	2	43	2	2.57298	3.6677099999999996	4.76244	0.00506495	0.00362147	0.0646039	0.0533855
chr21	18681954	18682054	7434622	0	-	0.29	(0.28,0.32]	chr21	758112	693	INTRON	INTRON	MIR548XHG	ENSG00000224141.6	ENST00000671206.1:ENST00000437492.6:ENST00000355189.7:ENST00000653218.1:ENST00000656413.1:ENST00000414582.1	lncRNA	lncRNA	lncRNA	lncRNA	2	54	2	2.08149	3.6676849999999996	5.25388	0.031124	0.00385849	0.143644	0.0542786
chr4	908774	908874	2094053	0	-	0.29	(0.28,0.32]	chr4	206964	36	INTRON	INTRON	GAK	ENSG00000178950.18	ENST00000314167.9:ENST00000511163.5:ENST00000505819.5:ENST00000507580.5:ENST00000502656.5:ENST00000512325.3:ENST00000510022.5:ENST00000511229.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	57	2	2.67153	3.66756	4.66359	0.0193496	0.00436402	0.108861	0.060356
chr6	157851970	157852070	3016050	0	+	0.35	(0.32,0.35]	chr6	281353	219	INTRON	INTRON	SNX9	ENSG00000130340.17	ENST00000614703.4:ENST00000614800.4:ENST00000680863.1:ENST00000679814.1:ENST00000680464.1:ENST00000681186.1:ENST00000679732.1:ENST00000681183.1:ENST00000681534.1:ENST00000681651.1:ENST00000680089.1:ENST00000680078.1:ENST00000680974.1:ENST00000680095.1:ENST00000680015.1:ENST00000681138.1:ENST00000392185.8:ENST00000679790.1:ENST00000680495.1:ENST00000679691.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	38	2	2.64129	3.6675450000000005	4.6938	0.0222819	0.0137794	0.124303	0.0949306
chr10	69147424	69147523	4444783	0	+	0.323232	(0.32,0.35]	chr10	410023	140	INTRON	INTRON	VPS26A	ENSG00000122958.15	ENST00000373382.5:ENST00000395098.5:ENST00000489656.5:ENST00000263559.11:ENST00000497564.5:ENST00000490696.5:ENST00000467852.1:ENST00000489794.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	39	2	2.96746	3.667505	4.36755	0.0300552	0.00815799	0.129138	0.0810802
chr12	107701334	107701434	5218917	0	+	0.33	(0.32,0.35]	chr12	494023	15	INTRON	INTRON	PWP1	ENSG00000136045.12	ENST00000412830.8:ENST00000541166.1	protein_coding	protein_coding	protein_coding	protein_coding	1	39	2	2.96746	3.667505	4.36755	0.0300552	0.00815799	0.129138	0.0810802
chr5	140496019	140496119	2503791	0	+	0.35	(0.32,0.35]	chr5	239247	1	SS3_PROX	SS3_PROX:INTRON	ANKHD1	ENSG00000131503.21	ENST00000297183.10:ENST00000360839.7:ENST00000421134.5:ENST00000246149.10:ENST00000412116.5:ENST00000506755.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	39	2	2.96746	3.667505	4.36755	0.0300552	0.00815799	0.129138	0.0810802
chr19	45111917	45112017	7079226	0	+	0.38	(0.378,0.408]	chr19	708078	31	INTRON	INTRON	PPP1R37	ENSG00000104866.11	ENST00000544069.2:ENST00000221462.9:ENST00000544897.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	58	2	2.2708	3.66746	5.06412	0.00646593	0.0030522	0.073179	0.0493883
chr19	11654771	11654871	7018398	0	+	0.37	(0.35,0.378]	chr19	697745	20	INTRON	INTRON	ENSG00000197332	ENSG00000197332.9	ENST00000666937.1:ENST00000344893.4	lncRNA	lncRNA	lncRNA	lncRNA	1	40	2	2.66547	3.66738	4.66929	0.0233639	0.00541617	0.118323	0.066545000000000007
chr5	41834365	41834465	2612340	0	-	0.37	(0.35,0.378]	chr5	248357	266	INTRON	INTRON	OXCT1	ENSG00000083720.13	ENST00000196371.10:ENST00000509987.1:ENST00000514723.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	40	2	2.66547	3.66738	4.66929	0.0233639	0.00541617	0.118323	0.066545000000000007
chr6	15377849	15377949	2824266	0	+	0.36	(0.35,0.378]	chr6	265198	32	INTRON	INTRON	JARID2	ENSG00000008083.14	ENST00000341776.7:ENST00000397311.4	protein_coding	protein_coding	protein_coding	protein_coding	3	59	2	1.97646	3.66737	5.35828	0.0193942	0.00135282	0.119831	0.0336321
chr16	23844785	23844884	6323846	0	+	0.50505	(0.476,0.515]	chr16	605693	70	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000498058.1:ENST00000645517.1:ENST00000498739.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	137	2	3.64721	3.66735	3.68749	4.2033e-5	2.01601e-5	0.00550232	0.00348095
chr13	95229922	95230021	5639157	0	-	0.454545	(0.44,0.476]	chr13	537151	188	INTRON	INTRON	ABCC4	ENSG00000125257.16	ENST00000645237.2:ENST00000643051.1:ENST00000643842.1:ENST00000646439.1:ENST00000643816.1:ENST00000536256.3:ENST00000643556.1:ENST00000629385.1:ENST00000642524.1:ENST00000645532.1:ENST00000644471.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	38	2	2.20949	3.6673100000000005	5.12513	0.0672585	7.96486e-4	0.183051	0.0258804
chr1	65059139	65059239	475481	0	-	0.37	(0.35,0.378]	chr1	57245	9	INTRON	INTRON	JAK1	ENSG00000162434.13	ENST00000672434.1:ENST00000671954.1:ENST00000673502.1:ENST00000672751.1:ENST00000672099.1	protein_coding	protein_coding	protein_coding	protein_coding	2	84	2	3.66151	3.6672849999999997	3.67306	7.05001e-4	4.717e-4	0.024224	0.0196294
chr3	172777497	172777596	1563496	0	+	0.262626	[0,0.28]	chr3	161783	31	INTRON	INTRON	ECT2	ENSG00000114346.14	ENST00000232458.9:ENST00000540509.5:ENST00000392692.8:ENST00000417960.5:ENST00000441497.6:ENST00000444250.1	protein_coding	protein_coding	protein_coding	protein_coding	4	90	2	2.3319	3.667265	5.00263	0.013055	0.00345409	0.093385	0.0539802
chr7	23470205	23470300	3503668	0	-	0.410526	(0.408,0.44]	chr7	326928	2	UTR5	UTR5:EXON_MRNA	IGF2BP3	ENSG00000136231.14	ENST00000258729.8:ENST00000421467.6:ENST00000468005.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	212	2	3.00057	3.6671899999999997	4.33381	5.11639e-5	2.42201e-7	0.0062158	2.37871e-4
chr19	904720	904819	7110853	0	-	0.454545	(0.44,0.476]	chr19	714174	17	INTRON	INTRON	R3HDM4	ENSG00000198858.10	ENST00000589428.5:ENST00000361574.10:ENST00000587975.2:ENST00000590454.2:ENST00000589445.1:ENST00000626716.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	56	2	2.08211	3.66695	5.25179	0.0130715	0.00124521	0.0996047	0.0322969
chr14	101893807	101893906	5819844	0	+	0.414141	(0.408,0.44]	chr14	551911	3	INTRON	INTRON	PPP2R5C	ENSG00000078304.20	ENST00000694906.1:ENST00000422945.6:ENST00000328724.9:ENST00000350249.7:ENST00000334743.9:ENST00000445439.7:ENST00000557095.5:ENST00000554137.5:ENST00000556218.5:ENST00000557534.1:ENST00000557716.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	39	2	2.89795	3.666875	4.4358	0.0110735	0.00893097	0.0873897	0.0849778
chr2	113914022	113914120	854485	0	+	0.255102	[0,0.28]	chr2	95903	4	INTRON	INTRON	ACTR3	ENSG00000115091.12	ENST00000443297.5:ENST00000263238.7:ENST00000415792.5:ENST00000446821.5:ENST00000535589.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	59	2	2.33097	3.6668000000000003	5.00263	0.0158969	0.013055	0.109464	0.093385
chr3	15851881	15851981	1624366	0	-	0.26	[0,0.28]	chr3	168034	372	INTRON	INTRON	ANKRD28	ENSG00000206560.12	ENST00000399451.6:ENST00000412318.5:ENST00000439830.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	59	2	2.33097	3.6668000000000003	5.00263	0.0158969	0.013055	0.109464	0.093385
chr11	20407219	20407318	4751120	0	+	0.20202	[0,0.28]	chr11	440011	19	EXON_MRNA	EXON_MRNA:INTRON	PRMT3	ENSG00000185238.13	ENST00000330796.9:ENST00000331079.11:ENST00000437750.2:ENST00000529592.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	71	2	2.02929	3.666765	5.30424	0.0189138	0.00584781	0.118303	0.0667594
chr6	147386333	147386431	2990556	0	+	0.255102	[0,0.28]	chr6	280154	17	UTR3	UTR3:EXON_MRNA	STXBP5	ENSG00000164506.15	ENST00000321680.11:ENST00000367481.7	protein_coding	protein_coding	protein_coding	protein_coding	1	50	2	2.77716	3.66667	4.55618	0.022039	0.0171034	0.115395	0.110899
chr1	203820871	203820970	296936	0	+	0.343434	(0.32,0.35]	chr1	34151	18	INTRON	INTRON	ZC3H11A:ZBED6	ENSG00000058673.17:ENSG00000257315.3	ENST00000367210.3:ENST00000453771.5:ENST00000638800.1:ENST00000367214.5:ENST00000639812.1:ENST00000367212.7:ENST00000332127.8:ENST00000550078.2:ENST00000495527.5:ENST00000640465.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	39	2	2.31405	3.66661	5.01917	0.0517107	0.0055659	0.176696	0.0648867
chr4	57005919	57006019	1964212	0	+	0.33	(0.32,0.35]	chr4	197145	2	SS5_PROX	SS5_PROX:INTRON	POLR2B	ENSG00000047315.17	ENST00000381227.5:ENST00000431623.6:ENST00000441246.6:ENST00000314595.6	protein_coding	protein_coding	protein_coding	protein_coding	1	39	2	2.31405	3.66661	5.01917	0.0517107	0.0055659	0.176696	0.0648867
chr7	75432730	75432830	3558390	0	-	0.33	(0.32,0.35]	chr7	331515	59	INTRON	INTRON	POM121C	ENSG00000272391.6	ENST00000615331.5:ENST00000607367.5:ENST00000473168.1:ENST00000439629.2:ENST00000479864.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	39	2	2.31405	3.66661	5.01917	0.0517107	0.0055659	0.176696	0.0648867
chr7	152371366	152371466	3680647	0	-	0.34	(0.32,0.35]	chr7	341660	123	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000682301.1:ENST00000452749.2:ENST00000680867.1:ENST00000683800.1:ENST00000684278.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	39	2	2.31405	3.66661	5.01917	0.0517107	0.0055659	0.176696	0.0648867
chr4	139679	139779	1905797	0	+	0.45	(0.44,0.476]	chr4	191032	78	INTRON	INTRON	ZNF718	ENSG00000250312.8	ENST00000642529.1:ENST00000510175.6:ENST00000609714.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	38	2	2.80275	3.666545	4.53034	0.0146513	0.00672609	0.0982604	0.0738715
chr17	48841983	48842080	6624057	0	+	0.391753	(0.378,0.408]	chr17	646431	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CALCOCO2	ENSG00000136436.15	ENST00000503463.5:ENST00000509507.5:ENST00000448105.6:ENST00000258947.8:ENST00000508679.5:ENST00000416445.6:ENST00000513119.5:ENST00000509415.5:ENST00000570513.5:ENST00000575560.5:ENST00000510356.5:ENST00000372317.7:ENST00000576582.5:ENST00000511697.1:ENST00000505071.5:ENST00000507076.1:ENST00000502761.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	59	2	2.39048	3.66649	4.9425	0.00452675	0.00395852	0.0595107	0.057511
chr4	110178762	110178862	2227536	0	-	0.42	(0.408,0.44]	chr4	218024	728	INTRON	INTRON	ELOVL6	ENSG00000170522.10	ENST00000394607.7:ENST00000302274.8:ENST00000514184.5:ENST00000506625.5:ENST00000506461.1:ENST00000503885.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	103	2	3.37244	3.666315	3.96019	1.56132e-4	1.2469e-4	0.0113571	0.00953295
chr7	24689507	24689607	3291897	0	+	0.21	[0,0.28]	chr7	305802	20	UTR3	UTR3:EXON_MRNA	PALS2	ENSG00000105926.16	ENST00000222644.10:ENST00000396475.6	protein_coding	protein_coding	protein_coding	protein_coding	1	51	2	2.86008	3.66631	4.47254	0.020991	0.0177015	0.122348	0.105304
chr9	27522162	27522262	4240051	0	-	0.53	(0.515,0.57]	chr9	389681	661	INTRON	INTRON	MOB3B	ENSG00000120162.10	ENST00000262244.6	protein_coding	protein_coding	protein_coding	protein_coding	5	65	2	1.9021	3.6661449999999998	5.43019	0.00848696	2.60422e-4	0.083161	0.0148796
chr14	103493831	103493931	5826757	0	+	0.32	(0.28,0.32]	chr14	552938	14	INTRON	INTRON	MARK3	ENSG00000075413.19	ENST00000678179.1:ENST00000676838.1:ENST00000677348.1:ENST00000677404.1:ENST00000676694.1:ENST00000676938.1:ENST00000678619.1:ENST00000676897.1:ENST00000677214.1:ENST00000677942.1:ENST00000676830.1:ENST00000678999.1:ENST00000677228.1:ENST00000556744.2:ENST00000677104.1:ENST00000679330.1:ENST00000560417.6:ENST00000440884.7:ENST00000677035.1:ENST00000678022.1:ENST00000677560.1:ENST00000561314.6:ENST00000429436.7:ENST00000677118.1:ENST00000676564.1:ENST00000678169.1:ENST00000678175.1:ENST00000678897.1:ENST00000678278.1:ENST00000676645.1:ENST00000677829.1:ENST00000678302.1:ENST00000677133.1:ENST00000678207.1:ENST00000677360.1:ENST00000676905.1:ENST00000678343.1:ENST00000677347.1:ENST00000678071.1:ENST00000677432.1:ENST00000678237.1:ENST00000677604.1:ENST00000676518.1:ENST00000677051.1:ENST00000677857.1:ENST00000677869.1:ENST00000416682.6:ENST00000303622.13:ENST00000216288.11:ENST00000679105.1:ENST00000553942.5:ENST00000335102.9:ENST00000678091.1:ENST00000561071.5:ENST00000676745.1:ENST00000554627.5:ENST00000679299.1:ENST00000678661.1:ENST00000677352.1:ENST00000676944.1:ENST00000677023.1:ENST00000678213.1:ENST00000678373.1:ENST00000679005.1:ENST00000556463.5:ENST00000558787.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	44	2	2.57195	3.66613	4.76031	0.0331711	0.00656106	0.133994	0.0735539
chr3	14162022	14162121	1619000	0	-	0.30303	(0.28,0.32]	chr3	167323	18	INTRON	INTRON	XPC	ENSG00000154767.15	ENST00000285021.12:ENST00000476581.6:ENST00000477324.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	44	2	2.57195	3.66613	4.76031	0.0331711	0.00656106	0.133994	0.0735539
chr6	20453866	20453966	2827969	0	+	0.35	(0.32,0.35]	chr6	265583	138	INTRON	INTRON	E2F3	ENSG00000112242.16	ENST00000346618.8:ENST00000535432.2	protein_coding	protein_coding	protein_coding	protein_coding	4	71	2	1.59364	3.6659349999999997	5.73823	0.0413426	4.5635e-4	0.161557	0.0196892
chr10	50393689	50393789	4618382	0	-	0.31	(0.28,0.32]	chr10	425422	490	INTRON	INTRON	SGMS1	ENSG00000198964.14	ENST00000429490.5:ENST00000361781.7:ENST00000619438.4:ENST00000492601.2:ENST00000609445.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	96	2	3.49198	3.6658549999999996	3.83973	0.00195595	2.68965e-4	0.0400756	0.0145349
chr3	191491265	191491365	1590841	0	+	0.25	[0,0.28]	chr3	164647	172	INTRON	INTRON	ENSG00000223812	ENSG00000223812.8	ENST00000657540.1:ENST00000439804.6:ENST00000663647.1:ENST00000668751.1:ENST00000666632.1:ENST00000664732.1:ENST00000662007.1:ENST00000641158.1:ENST00000664994.1:ENST00000669884.1:ENST00000642133.1:ENST00000656380.1:ENST00000641055.1:ENST00000662578.1:ENST00000661668.1:ENST00000658347.1:ENST00000661029.1:ENST00000651548.2:ENST00000669360.1:ENST00000653490.1:ENST00000656942.1:ENST00000666456.1:ENST00000668276.1:ENST00000671595.1:ENST00000660290.1	lncRNA	lncRNA	lncRNA	lncRNA	2	65	2	1.98291	3.66585	5.34879	0.0494143	0.00157139	0.156195	0.0365659
chr3	194450375	194450474	1890825	0	-	0.333333	(0.32,0.35]	chr3	189201	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	ATP13A3	ENSG00000133657.17	ENST00000687055.1:ENST00000645538.1:ENST00000645319.2:ENST00000690810.1:ENST00000645621.1:ENST00000642744.2:ENST00000439040.6:ENST00000485194.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	64	2	2.37199	3.66585	4.95971	0.00663522	0.00465833	0.0703181	0.0629753
chr1	180788851	180788951	271166	0	+	0.34	(0.32,0.35]	chr1	31626	6	INTRON	INTRON	XPR1	ENSG00000143324.14	ENST00000367590.9:ENST00000367589.3	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	2.71269	3.6657900000000003	4.61889	0.0181461	0.0166646	0.114853	0.102621
chr15	60450905	60450999	6195719	0	-	0.340426	(0.32,0.35]	chr15	590422	7	INTRON	INTRON	ICE2	ENSG00000128915.12	ENST00000261520.9:ENST00000558181.5:ENST00000561328.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	38	2	2.71269	3.6657900000000003	4.61889	0.0181461	0.0166646	0.114853	0.102621
chr18	9233146	9233246	6869905	0	+	0.35	(0.32,0.35]	chr18	680611	108	INTRON	INTRON	ANKRD12	ENSG00000101745.17	ENST00000262126.9:ENST00000540578.6:ENST00000400020.7:ENST00000546007.6:ENST00000359158.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	38	2	2.71269	3.6657900000000003	4.61889	0.0181461	0.0166646	0.114853	0.102621
chr2	158647478	158647578	899073	0	+	0.35	(0.32,0.35]	chr2	99436	44	INTRON	INTRON	PKP4	ENSG00000144283.23	ENST00000389759.8:ENST00000426248.7:ENST00000389757.7:ENST00000452162.5:ENST00000421462.5:ENST00000492496.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	38	2	2.71269	3.6657900000000003	4.61889	0.0181461	0.0166646	0.114853	0.102621
chr2	214808611	214808711	1326178	0	-	0.33	(0.32,0.35]	chr2	138639	111	INTRON	INTRON	BARD1	ENSG00000138376.11	ENST00000260947.9:ENST00000617164.5:ENST00000619009.5:ENST00000613374.5:ENST00000613706.5:ENST00000421162.2:ENST00000613192.2:ENST00000620057.4:ENST00000455743.5:ENST00000471787.1:ENST00000479904.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	38	2	2.71269	3.6657900000000003	4.61889	0.0181461	0.0166646	0.114853	0.102621
chr5	43126139	43126238	2349079	0	+	0.333333	(0.32,0.35]	chr5	226661	12	INTRON	INTRON	ZNF131	ENSG00000172262.12	ENST00000515326.5:ENST00000682664.1:ENST00000510026.5:ENST00000504359.1:ENST00000509156.5:ENST00000508259.5:ENST00000507218.5:ENST00000306938.8:ENST00000505606.6:ENST00000509634.5:ENST00000509341.5:ENST00000511736.5:ENST00000509931.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	62	2	1.78201	3.665725	5.54944	0.0365003	9.42646e-4	0.153759	0.0280811
chr2	65419980	65420079	1144071	0	-	0.515152	(0.476,0.515]	chr2	122242	424	INTRON	INTRON	SPRED2	ENSG00000198369.10	ENST00000356388.9:ENST00000440972.1	protein_coding	protein_coding	protein_coding	protein_coding	1	37	2	2.40608	3.6656850000000003	4.92529	0.0425709	0.00180221	0.148082	0.0392772
chr8	97650181	97650281	3809119	0	+	0.51	(0.476,0.515]	chr8	352836	49	INTRON	INTRON	MTDH	ENSG00000147649.10	ENST00000336273.8:ENST00000519934.5:ENST00000522313.1	protein_coding	protein_coding	protein_coding	protein_coding	1	37	2	2.40608	3.6656850000000003	4.92529	0.0425709	0.00180221	0.148082	0.0392772
chr9	128989919	128990019	4208302	0	+	0.44	(0.408,0.44]	chr9	385366	4	SS3_PROX	SS3_PROX:INTRON	NUP188	ENSG00000095319.14	ENST00000372577.2:ENST00000477069.5:ENST00000491502.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	51	2	2.26792	3.6656750000000002	5.06343	0.0179973	0.00101725	0.106756	0.0293497
chr1	22084460	22084559	42531	0	+	0.333333	(0.32,0.35]	chr1	5116	23	INTRON	INTRON	ENSG00000289694:CDC42	ENSG00000289694.1:ENSG00000070831.18	ENST00000695855.1:ENST00000695856.1:ENST00000344548.8:ENST00000400259.5:ENST00000667384.2:ENST00000411827.2:ENST00000695858.1:ENST00000695857.1:ENST00000315554.14:ENST00000695859.1:ENST00000498236.1:ENST00000656825.1:ENST00000651171.1:ENST00000652582.1:ENST00000695860.1:ENST00000695796.1:ENST00000695797.1:ENST00000662562.2:ENST00000695798.1:ENST00000695799.1:ENST00000695800.1:ENST00000695801.1:ENST00000695802.1:ENST00000695861.1:ENST00000695862.1:ENST00000695863.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	38	2	2.56618	3.665595	4.76501	0.0274185	0.0114287	0.136498	0.0886611
chr5	32421300	32421400	2599094	0	-	0.34	(0.32,0.35]	chr5	246966	8	INTRON	INTRON	ZFR	ENSG00000056097.16	ENST00000265069.13:ENST00000505366.1:ENST00000505204.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	38	2	2.56618	3.665595	4.76501	0.0274185	0.0114287	0.136498	0.0886611
chr7	107170330	107170430	3378368	0	+	0.26	[0,0.28]	chr7	316311	2	SS5_PROX	SS5_PROX:INTRON	HBP1	ENSG00000105856.14	ENST00000468410.5:ENST00000478930.5:ENST00000464009.1:ENST00000222574.9:ENST00000468401.1:ENST00000468116.1:ENST00000497535.5:ENST00000485846.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	95	2	1.98218	3.66554	5.3489	0.00868679	0.00514751	0.0843099	0.062965
chr11	68895201	68895297	4974760	0	-	0.427083	(0.408,0.44]	chr11	469781	14	INTRON	INTRON	MRPL21	ENSG00000197345.13	ENST00000450904.6:ENST00000362034.7:ENST00000565125.5:ENST00000541279.1:ENST00000567045.5:ENST00000544567.5:ENST00000541265.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	41	2	3.10641	3.6654400000000003	4.22447	0.0161655	0.00555646	0.109464	0.0648867
chr20	17982283	17982382	7243347	0	+	0.494949	(0.476,0.515]	chr20	735422	60	INTRON	INTRON	MGME1	ENSG00000125871.14	ENST00000377710.10:ENST00000377709.1:ENST00000377704.4:ENST00000463219.1:ENST00000467391.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	37	2	2.63168	3.6654299999999997	4.69918	0.0237106	0.00400966	0.118716	0.057767
chr7	75515217	75515284	3559018	0	-	0.447761	(0.44,0.476]	chr7	331591	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PMS2P3	ENSG00000127957.19	ENST00000693762.1:ENST00000394921.8:ENST00000430602.5:ENST00000418756.5:ENST00000529061.7:ENST00000437568.6:ENST00000533167.5:ENST00000691440.1:ENST00000422064.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	2	48	2	1.93084	3.66542	5.4	0.0443175	7.02611e-4	0.162302	0.024224
chr12	51076991	51077069	5324984	0	-	0.282051	(0.28,0.32]	chr12	507782	3	SS3_PROX	SS3_PROX:INTRON	CSRNP2	ENSG00000110925.7	ENST00000228515.6:ENST00000548206.1:ENST00000548981.5:ENST00000552899.5:ENST00000546935.5:ENST00000552680.1:ENST00000550461.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	65	2	2.02902	3.665275	5.30153	0.0174423	0.00332518	0.11269	0.0512081
chr8	67217062	67217162	3962518	0	-	0.53	(0.515,0.57]	chr8	363574	4	SS3_PROX	SS3_PROX:INTRON	ARFGEF1	ENSG00000066777.9	ENST00000520381.5:ENST00000262215.8:ENST00000518230.5	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	3.12663	3.6652199999999997	4.20381	0.0189208	0.00374498	0.108861	0.0562234
chr7	103324813	103324896	3594126	0	-	0.433735	(0.408,0.44]	chr7	335512	2	SS3_PROX	SS3_PROX:INTRON	DNAJC2	ENSG00000105821.15	ENST00000379263.8:ENST00000249270.11:ENST00000475065.5:ENST00000464253.5:ENST00000426036.6:ENST00000454277.5:ENST00000379257.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	56	2	2.03431	3.665215	5.29612	0.0154896	0.00113523	0.108998	0.0307488
chr17	22148263	22148363	6579146	0	+	0.28	[0,0.28]	chr17	639556	570	INTRON	INTRON	UBBP4	ENSG00000263563.7	ENST00000648259.1:ENST00000688301.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	4	81	2	1.77685	3.6652050000000003	5.55356	0.0259533	0.00278704	0.133676	0.0469265
chr3	10316695	10316789	1613276	0	-	0.468085	(0.44,0.476]	chr3	166611	9	INTRON	INTRON	SEC13	ENSG00000157020.18	ENST00000350697.8:ENST00000337354.8:ENST00000397109.7:ENST00000397117.5:ENST00000383801.6:ENST00000477547.6:ENST00000397105.7:ENST00000431352.1:ENST00000397102.5:ENST00000397101.5:ENST00000397099.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	47	2	2.49823	3.6651249999999997	4.83202	0.00718224	0.00525002	0.0756118	0.0633615
chr7	152065501	152065600	3449909	0	+	0.393939	(0.378,0.408]	chr7	322435	374	INTRON	INTRON	GALNT11	ENSG00000178234.13	ENST00000430044.7:ENST00000482812.1:ENST00000431668.1:ENST00000446096.5:ENST00000447778.5:ENST00000423337.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	51	2	2.82967	3.665115	4.50056	0.015974	0.00189968	0.101453	0.0402736
chr7	6468008	6468107	3478203	0	-	0.484848	(0.476,0.515]	chr7	325458	13	INTRON	INTRON	DAGLB:KDELR2	ENSG00000164535.15:ENSG00000136240.10	ENST00000436575.5:ENST00000463747.1:ENST00000258739.9:ENST00000454368.2:ENST00000490996.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	56	2	2.01953	3.6650549999999997	5.31058	0.0163662	9.15544e-4	0.109586	0.0278396
chr1	40402359	40402458	81731	0	+	0.232323	[0,0.28]	chr1	10562	51	INTRON	INTRON	SMAP2	ENSG00000084070.12	ENST00000435168.6:ENST00000372718.8:ENST00000372708.5:ENST00000614549.4:ENST00000539317.2	protein_coding	protein_coding	protein_coding	protein_coding	1	43	2	2.57033	3.6649849999999997	4.75964	0.0305273	0.0232081	0.143385	0.118148
chr2	199417597	199417697	1308846	0	-	0.28	[0,0.28]	chr2	136882	194	INTRON	INTRON	SATB2	ENSG00000119042.17	ENST00000614512.4:ENST00000417098.6:ENST00000260926.9:ENST00000443023.5:ENST00000428695.5:ENST00000457245.5:ENST00000484124.1:ENST00000440919.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	43	2	2.57033	3.6649849999999997	4.75964	0.0305273	0.0232081	0.143385	0.118148
chr4	56407062	56407149	2151371	0	-	0.264368	[0,0.28]	chr4	211790	4	SS3_PROX	SS3_PROX:INTRON	PPAT	ENSG00000128059.8	ENST00000264220.6:ENST00000507648.5:ENST00000510643.5:ENST00000507724.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	43	2	2.57033	3.6649849999999997	4.75964	0.0305273	0.0232081	0.143385	0.118148
chr7	73461654	73461750	3554479	0	-	0.25	[0,0.28]	chr7	330747	16	INTRON	INTRON	BAZ1B	ENSG00000009954.11	ENST00000339594.9:ENST00000404251.1	protein_coding	protein_coding	protein_coding	protein_coding	1	43	2	2.57033	3.6649849999999997	4.75964	0.0305273	0.0232081	0.143385	0.118148
chr8	127741356	127741456	3860023	0	+	0.22	[0,0.28]	chr8	355373	5	UTR3	UTR3:EXON_MRNA	MYC	ENSG00000136997.21	ENST00000651626.1:ENST00000377970.6:ENST00000524013.2:ENST00000621592.8:ENST00000652288.1	protein_coding	protein_coding	protein_coding	protein_coding	1	43	2	2.57033	3.6649849999999997	4.75964	0.0305273	0.0232081	0.143385	0.118148
chr2	86452109	86452208	823041	0	+	0.323232	(0.32,0.35]	chr2	91913	5	INTRON	INTRON	KDM3A	ENSG00000115548.17	ENST00000409556.5:ENST00000312912.10:ENST00000441719.5:ENST00000409064.5:ENST00000427678.1:ENST00000463013.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	58	2	2.96232	3.664935	4.36755	0.0300552	0.00118924	0.129138	0.031662
chr15	43392193	43392292	6011619	0	+	0.272727	[0,0.28]	chr15	572516	55	INTRON	INTRON	TUBGCP4	ENSG00000137822.13	ENST00000564079.6:ENST00000260383.11:ENST00000561691.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	43	2	2.5055	3.6649149999999997	4.82433	0.0359431	0.0200334	0.152322	0.109608
chr4	145124015	145124100	2064129	0	+	0.270588	[0,0.28]	chr4	204263	2	SS5_PROX	SS5_PROX:INTRON	ABCE1	ENSG00000164163.11	ENST00000296577.9:ENST00000507193.5:ENST00000504683.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	43	2	2.5055	3.6649149999999997	4.82433	0.0359431	0.0200334	0.152322	0.109608
chrX	114025070	114025170	7868291	0	-	0.25	[0,0.28]	chrX	801551	332	INTRON	INTRON	XACT	ENSG00000241743.4	ENST00000468762.3:ENST00000649506.1	lncRNA	lncRNA	lncRNA	lncRNA	1	43	2	2.5055	3.6649149999999997	4.82433	0.0359431	0.0200334	0.152322	0.109608
chr22	19052714	19052814	7551305	0	-	0.4	(0.378,0.408]	chr22	771857	37	INTRON	INTRON	DGCR2	ENSG00000070413.20	ENST00000537045.5:ENST00000545799.5:ENST00000263196.12:ENST00000389262.8:ENST00000467659.1:ENST00000608548.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	81	2	3.56208	3.66491	3.76774	6.94246e-4	4.21442e-4	0.0240761	0.0189827
chr7	6379714	6379814	3273072	0	+	0.35	(0.32,0.35]	chr7	304311	34	INTRON	INTRON	RAC1	ENSG00000136238.19	ENST00000348035.9:ENST00000356142.4:ENST00000696666.1:ENST00000488373.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	42	2	2.68921	3.664835	4.64046	0.0230336	0.00724767	0.118056	0.0756327
chr2	156243622	156243721	1248868	0	-	0.454545	(0.44,0.476]	chr2	132427	153	INTRON	INTRON	LINC01876	ENSG00000226383.7	ENST00000635799.1:ENST00000662073.1:ENST00000659502.1:ENST00000428651.2:ENST00000661513.1:ENST00000657334.1:ENST00000638047.1:ENST00000637554.1:ENST00000636956.1:ENST00000637665.1:ENST00000637476.1:ENST00000637324.1	lncRNA	lncRNA	lncRNA	lncRNA	2	47	2	2.0776	3.664695	5.25179	0.0292951	0.00124521	0.141862	0.0322969
chr8	11862155	11862244	3908800	0	-	0.47191	(0.44,0.476]	chr8	358211	3	SS5_PROX	SS5_PROX:INTRON	CTSB	ENSG00000164733.22	ENST00000677671.1:ENST00000678092.1:ENST00000679128.1:ENST00000677873.1:ENST00000676691.1:ENST00000678598.1:ENST00000353047.11:ENST00000677650.1:ENST00000526481.7:ENST00000676825.1:ENST00000678242.1:ENST00000677366.1:ENST00000677544.1:ENST00000530640.7:ENST00000677418.1:ENST00000677047.1:ENST00000676502.1:ENST00000531089.6:ENST00000678629.1:ENST00000678145.1:ENST00000678929.1:ENST00000677819.1:ENST00000677415.1:ENST00000678357.1:ENST00000676755.1:ENST00000679051.1:ENST00000453527.7:ENST00000678067.1:ENST00000679140.1:ENST00000677082.1:ENST00000533455.6:ENST00000531551.5:ENST00000534382.6:ENST00000679214.1:ENST00000531502.6:ENST00000534510.6:ENST00000677865.1:ENST00000533572.6:ENST00000345125.8:ENST00000526645.6:ENST00000534149.6:ENST00000505496.7:ENST00000532392.2:ENST00000676843.1:ENST00000524500.6:ENST00000525076.6:ENST00000527215.7:ENST00000528965.2:ENST00000532656.7:ENST00000526195.6:ENST00000678615.1:ENST00000527243.6:ENST00000530296.6:ENST00000534636.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	47	2	2.0776	3.664695	5.25179	0.0292951	0.00124521	0.141862	0.0322969
chr3	197855044	197855144	1598374	0	+	0.38	(0.378,0.408]	chr3	165643	2	INTRON	INTRON	LRCH3	ENSG00000186001.14	ENST00000438796.6:ENST00000428136.2:ENST00000425562.7:ENST00000441090.6:ENST00000414675.6:ENST00000334859.8:ENST00000461674.5:ENST00000452660.5:ENST00000433298.5:ENST00000481048.5:ENST00000466845.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	37	2	3.1136	3.664615	4.21563	0.0315429	0.00443339	0.13151	0.061054
chr4	143905507	143905563	2251494	0	-	0.446429	(0.44,0.476]	chr4	219940	1	UTR5	UTR5:EXON_MRNA	GYPE	ENSG00000197465.14	ENST00000358615.9:ENST00000506264.5:ENST00000437468.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	77	2	3.39322	3.664535	3.93585	0.00187283	1.04728e-4	0.0390476	0.00863456
chr19	34443443	34443543	7053276	0	+	0.5	(0.476,0.515]	chr19	703520	2	SS3_PROX	SS3_PROX:INTRON	UBA2	ENSG00000126261.13	ENST00000586313.1:ENST00000590048.6:ENST00000246548.9:ENST00000439527.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	78	2	1.44561	3.6644900000000002	5.88337	0.0359862	7.59355e-5	0.152355	0.00777694
chr22	50444621	50444715	7545231	0	+	0.393617	(0.378,0.408]	chr22	771145	5	UTR3	UTR3:EXON_MRNA	PPP6R2	ENSG00000100239.16	ENST00000359139.7:ENST00000612753.5	protein_coding	protein_coding	protein_coding	protein_coding	7	95	2	1.43527	3.66448	5.89369	0.0342334	2.33849e-5	0.135511	0.00378116
chr2	127494186	127494278	1224412	0	-	0.413043	(0.408,0.44]	chr2	130347	4	INTRON	INTRON	IWS1	ENSG00000163166.15	ENST00000295321.9	protein_coding	protein_coding	protein_coding	protein_coding	3	56	2	2.08376	3.664385	5.24501	0.0129886	0.00137378	0.0991656	0.0336718
chr6	150981143	150981243	2999036	0	+	0.46	(0.44,0.476]	chr6	280593	87	INTRON	INTRON	MTHFD1L	ENSG00000120254.16	ENST00000611279.4:ENST00000367321.8:ENST00000618312.4:ENST00000478643.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	56	2	2.12992	3.6643600000000003	5.1988	0.010975	0.00151532	0.092635	0.0352794
chr12	69360620	69360718	5163941	0	+	0.408163	(0.378,0.408]	chr12	489082	2	INTRON	INTRON	YEATS4	ENSG00000127337.7	ENST00000548020.5:ENST00000549685.5:ENST00000247843.7:ENST00000552949.1:ENST00000552955.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	50	2	1.81685	3.664295	5.51174	0.0597868	5.93655e-4	0.189982	0.0225024
chrX	135350013	135350113	7725381	0	+	0.56	(0.515,0.57]	chrX	790351	3	INTRON	INTRON	ZNF449	ENSG00000173275.13	ENST00000339249.5	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	2.35125	3.6642349999999997	4.97722	0.0436431	0.00168681	0.162255	0.0370386
chr7	73445987	73446084	3554318	0	-	0.463918	(0.44,0.476]	chr7	330723	15	INTRON	INTRON	BAZ1B	ENSG00000009954.11	ENST00000339594.9:ENST00000404251.1	protein_coding	protein_coding	protein_coding	protein_coding	3	61	2	1.61163	3.66412	5.71661	0.0598319	5.13947e-5	0.169278	0.00585477
chr11	2970861	2970947	4891776	0	-	0.313953	(0.28,0.32]	chr11	458323	6	INTRON	INTRON	NAP1L4	ENSG00000205531.13	ENST00000620138.4:ENST00000380542.9:ENST00000526115.5:ENST00000532325.6:ENST00000448187.5:ENST00000399614.6:ENST00000430811.5:ENST00000529361.5:ENST00000528968.5	protein_coding	protein_coding	protein_coding	protein_coding	1	40	2	2.73945	3.6641000000000004	4.58875	0.0230574	0.017681	0.118056	0.11319
chr12	76535546	76535642	5372139	0	-	0.3125	(0.28,0.32]	chr12	512497	9	INTRON	INTRON	OSBPL8	ENSG00000091039.17	ENST00000261183.8:ENST00000393249.6:ENST00000611266.4:ENST00000393250.8:ENST00000547540.5:ENST00000553139.5:ENST00000549570.5:ENST00000550628.5:ENST00000549646.5:ENST00000551927.5:ENST00000547544.5:ENST00000552178.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	40	2	2.73945	3.6641000000000004	4.58875	0.0230574	0.017681	0.118056	0.11319
chr2	63914687	63914787	1138949	0	-	0.31	(0.28,0.32]	chr2	121952	4	SS3_PROX	SS3_PROX:INTRON	VPS54	ENSG00000143952.20	ENST00000409558.8:ENST00000272322.9:ENST00000354504.7:ENST00000416400.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	40	2	2.73945	3.6641000000000004	4.58875	0.0230574	0.017681	0.118056	0.11319
chr20	3367766	3367866	7307919	0	-	0.32	(0.28,0.32]	chr20	744185	78	INTRON	INTRON	DNAAF9	ENSG00000088854.13	ENST00000252032.10	protein_coding	protein_coding	protein_coding	protein_coding	1	40	2	2.73945	3.6641000000000004	4.58875	0.0230574	0.017681	0.118056	0.11319
chr5	65946888	65946988	2371047	0	+	0.3	(0.28,0.32]	chr5	228472	197	INTRON	INTRON	ERBIN	ENSG00000112851.15	ENST00000380943.6:ENST00000507490.1:ENST00000416865.6:ENST00000380935.5:ENST00000284037.10:ENST00000380938.6:ENST00000511297.5:ENST00000506030.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	40	2	2.73945	3.6641000000000004	4.58875	0.0230574	0.017681	0.118056	0.11319
chr6	99548424	99548520	3167136	0	-	0.302083	(0.28,0.32]	chr6	295487	16	INTRON	INTRON	CCNC	ENSG00000112237.13	ENST00000520429.6:ENST00000326298.8:ENST00000369220.8:ENST00000520371.5:ENST00000523961.5:ENST00000523799.5:ENST00000486428.6:ENST00000523985.5:ENST00000518714.5:ENST00000484049.6:ENST00000524049.5:ENST00000519617.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	40	2	2.73945	3.6641000000000004	4.58875	0.0230574	0.017681	0.118056	0.11319
chr7	157211210	157211309	3454678	0	+	0.282828	(0.28,0.32]	chr7	322975	29	INTRON	INTRON	UBE3C	ENSG00000009335.18	ENST00000348165.10:ENST00000469336.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	40	2	2.73945	3.6641000000000004	4.58875	0.0230574	0.017681	0.118056	0.11319
chr5	140539418	140539505	2504255	0	+	0.356322	(0.35,0.378]	chr5	239355	1	UTR3	UTR3:EXON_MRNA	ANKHD1	ENSG00000131503.21	ENST00000360839.7:ENST00000431508.5:ENST00000433049.5:ENST00000435794.5:ENST00000432301.5	protein_coding	protein_coding	protein_coding	protein_coding	4	69	2	1.49446	3.66404	5.83362	0.054297	2.04087e-4	0.182243	0.0129859
chr4	39910638	39910738	2131524	0	-	0.34	(0.32,0.35]	chr4	210199	3	SS3_PROX	SS3_PROX:INTRON	PDS5A	ENSG00000121892.15	ENST00000303538.13:ENST00000503396.5:ENST00000513798.1:ENST00000512643.1:ENST00000508625.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	51	2	2.25173	3.66401	5.07629	0.0180122	0.00468114	0.114436	0.0600108
chr1	179157280	179157380	592355	0	-	0.5	(0.476,0.515]	chr1	71074	143	INTRON	INTRON	ABL2	ENSG00000143322.21	ENST00000502732.6:ENST00000367623.8:ENST00000507173.5:ENST00000511413.5:ENST00000668691.1:ENST00000392043.4:ENST00000660584.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	60	2	1.93059	3.6638400000000004	5.39709	0.023762	2.55871e-4	0.118822	0.0142249
chr21	46212724	46212824	7470710	0	-	0.51	(0.476,0.515]	chr21	761501	3	SS5_PROX	SS5_PROX:INTRON	LSS	ENSG00000160285.15	ENST00000356396.8:ENST00000397728.8:ENST00000457828.6:ENST00000522411.5	protein_coding	protein_coding	protein_coding	protein_coding	1	39	2	2.99852	3.663835	4.32915	0.0124637	0.0077575	0.0973643	0.0757402
chr4	87115699	87115799	1995621	0	+	0.51	(0.476,0.515]	chr4	199103	4	SS5_PROX	SS5_PROX:INTRON	AFF1	ENSG00000172493.23	ENST00000395146.9:ENST00000674009.1:ENST00000544085.6:ENST00000307808.10:ENST00000503369.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	39	2	2.99852	3.663835	4.32915	0.0124637	0.0077575	0.0973643	0.0757402
chr17	51033308	51033407	6796134	0	-	0.292929	(0.28,0.32]	chr17	670990	12	INTRON	INTRON	SPAG9	ENSG00000008294.22	ENST00000262013.12:ENST00000510283.5:ENST00000505279.5:ENST00000357122.8:ENST00000514613.5:ENST00000505173.5:ENST00000576492.1:ENST00000510855.1:ENST00000511987.5:ENST00000502329.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	40	2	2.46018	3.6637449999999996	4.86731	0.0375904	0.0116253	0.156054	0.0889104
chr3	17675165	17675265	1629757	0	-	0.31	(0.28,0.32]	chr3	168267	26	INTRON	INTRON	TBC1D5	ENSG00000131374.15	ENST00000253692.11:ENST00000696125.1:ENST00000414318.2:ENST00000429383.8:ENST00000446818.6:ENST00000415814.6:ENST00000452492.6:ENST00000412981.5:ENST00000428355.5:ENST00000425944.5:ENST00000430169.5:ENST00000445294.5:ENST00000414349.5:ENST00000443499.6:ENST00000444756.5:ENST00000497531.5:ENST00000443386.5:ENST00000507877.5:ENST00000446863.5:ENST00000444471.5:ENST00000433533.5:ENST00000481396.5:ENST00000480435.5:ENST00000423331.6:ENST00000485432.1:ENST00000471679.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	40	2	2.46018	3.6637449999999996	4.86731	0.0375904	0.0116253	0.156054	0.0889104
chr3	38236499	38236579	1399273	0	+	0.3	(0.28,0.32]	chr3	146724	3	SS3_PROX	SS3_PROX:INTRON	OXSR1	ENSG00000172939.9	ENST00000446845.5:ENST00000311806.8	protein_coding	protein_coding	protein_coding	protein_coding	1	40	2	2.46018	3.6637449999999996	4.86731	0.0375904	0.0116253	0.156054	0.0889104
chr6	35906773	35906873	3088683	0	-	0.32	(0.28,0.32]	chr6	288898	14	INTRON	INTRON	SRPK1	ENSG00000096063.16	ENST00000373825.7:ENST00000423325.6:ENST00000346162.10:ENST00000361690.7:ENST00000510290.5:ENST00000508473.5:ENST00000512445.5:ENST00000513367.1:ENST00000507909.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	40	2	2.46018	3.6637449999999996	4.86731	0.0375904	0.0116253	0.156054	0.0889104
chr6	73303083	73303182	3139055	0	-	0.313131	(0.28,0.32]	chr6	292508	107	INTRON	INTRON	KHDC1	ENSG00000135314.13	ENST00000370384.7:ENST00000484801.5:ENST00000474593.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	40	2	2.46018	3.6637449999999996	4.86731	0.0375904	0.0116253	0.156054	0.0889104
chr2	172573915	172574015	920085	0	+	0.32	(0.28,0.32]	chr2	101374	27	INTRON	INTRON	PDK1	ENSG00000152256.14	ENST00000392571.6:ENST00000410055.5:ENST00000282077.8:ENST00000466437.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	132	2	2.79541	3.663635	4.53186	0.00376367	6.85465e-6	0.0539127	0.00186176
chr15	41356440	41356540	6005015	0	+	0.5	(0.476,0.515]	chr15	571324	3	SS5_PROX	SS5_PROX:INTRON	NUSAP1	ENSG00000137804.14	ENST00000668273.1:ENST00000260359.10:ENST00000558123.5:ENST00000414849.6:ENST00000450592.6:ENST00000559596.6:ENST00000560747.5:ENST00000560177.5:ENST00000557840.5:ENST00000560898.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	37	2	3.19119	3.663525	4.13586	0.031846	0.00325748	0.13151	0.0524329
chr3	154313446	154313546	1843426	0	-	0.46	(0.44,0.476]	chr3	185461	13	INTRON	INTRON	DHX36	ENSG00000174953.14	ENST00000496811.6:ENST00000308361.10:ENST00000329463.9:ENST00000481941.5	protein_coding	protein_coding	protein_coding	protein_coding	3	103	2	3.0335	3.663405	4.29331	9.65686e-4	1.36744e-5	0.0282401	0.00275994
chr22	19119431	19119531	7551985	0	-	0.5	(0.476,0.515]	chr22	771903	296	INTRON	INTRON	DGCR2	ENSG00000070413.20	ENST00000537045.5:ENST00000545799.5:ENST00000263196.12:ENST00000389262.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	169	2	2.56482	3.66335	4.76188	2.05882e-4	1.56491e-6	0.0124708	8.28276e-4
chr1	150929566	150929666	223386	0	+	0.54	(0.515,0.57]	chr1	25356	2	SS3_PROX	SS3_PROX:INTRON	SETDB1	ENSG00000143379.13	ENST00000487584.6:ENST00000525956.5:ENST00000692314.1:ENST00000690229.1:ENST00000271640.9:ENST00000448029.5:ENST00000368962.6:ENST00000692827.1:ENST00000534805.5:ENST00000368969.8:ENST00000459773.1:ENST00000368963.5:ENST00000498193.5:ENST00000368964.3:ENST00000423081.1:ENST00000481219.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	32	2	2.9114	3.66319	4.41498	0.0106866	0.00826019	0.0861859	0.0813266
chr15	50909818	50909916	6023158	0	+	0.520408	(0.515,0.57]	chr15	574061	5	INTRON	INTRON	AP4E1	ENSG00000081014.11	ENST00000561441.5:ENST00000561393.5:ENST00000558439.5:ENST00000261842.10:ENST00000560508.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	32	2	2.9114	3.66319	4.41498	0.0106866	0.00826019	0.0861859	0.0813266
chr10	58397838	58397936	4435750	0	+	0.479592	(0.476,0.515]	chr10	409159	29	UTR3	UTR3:EXON_MRNA	TFAM	ENSG00000108064.11	ENST00000487519.6	protein_coding	protein_coding	protein_coding	protein_coding	2	50	2	2.26789	3.6631799999999997	5.05847	0.0176567	0.00108081	0.105233	0.0300133
chr6	28917356	28917454	3075534	0	-	0.510204	(0.476,0.515]	chr6	285946	17	INTRON	INTRON	TRIM27	ENSG00000204713.11	ENST00000377194.7:ENST00000377199.4:ENST00000481474.5:ENST00000498117.1:ENST00000496091.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	50	2	2.26789	3.6631799999999997	5.05847	0.0176567	0.00108081	0.105233	0.0300133
chr7	108507302	108507401	3614456	0	-	0.383838	(0.378,0.408]	chr7	336994	43	INTRON	INTRON	PNPLA8	ENSG00000135241.17	ENST00000257694.13:ENST00000426128.6:ENST00000453144.5:ENST00000422087.5:ENST00000436062.5:ENST00000453085.1:ENST00000483879.5:ENST00000476592.5:ENST00000489738.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	52	2	1.88729	3.6631050000000003	5.43892	0.0532327	2.28412e-4	0.162538	0.0133228
chr6	87228030	87228130	2913990	0	+	0.38	(0.378,0.408]	chr6	275311	42	INTRON	INTRON	ZNF292	ENSG00000188994.13	ENST00000369577.8:ENST00000518845.1:ENST00000339907.8:ENST00000496806.2	protein_coding	protein_coding	protein_coding	protein_coding	3	107	2	3.1187	3.6630399999999996	4.20738	7.19674e-4	2.43547e-5	0.0246343	0.00386122
chr16	8909845	8909945	6442196	0	-	0.54	(0.515,0.57]	chr16	620514	10	INTRON	INTRON	USP7	ENSG00000187555.16	ENST00000673704.1:ENST00000344836.9:ENST00000563961.5:ENST00000381886.8:ENST00000565455.5:ENST00000563085.5:ENST00000542333.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	45	2	2.32967	3.66301	4.99635	0.0133671	8.06602e-4	0.0946278	0.0258804
chr16	23481366	23481462	6464282	0	-	0.427083	(0.408,0.44]	chr16	623854	2	INTRON	INTRON	GGA2	ENSG00000103365.15	ENST00000309859.8:ENST00000567468.5	protein_coding	protein_coding	protein_coding	protein_coding	4	64	2	1.8865	3.66295	5.4394	0.0148842	6.50925e-4	0.107116	0.0232863
chr11	63683676	63683776	4799935	0	+	0.27	[0,0.28]	chr11	444936	15	INTRON	INTRON	RTN3	ENSG00000133318.14	ENST00000341307.6:ENST00000356000.7:ENST00000542238.5:ENST00000538995.1:ENST00000339997.8:ENST00000540798.5:ENST00000537981.5:ENST00000377819.10:ENST00000536011.5:ENST00000543123.1:ENST00000543552.5:ENST00000545432.5:ENST00000338850.5:ENST00000354497.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	72	2	2.16436	3.6628299999999996	5.1613	0.0120935	0.00866441	0.0962599	0.0787025
chr2	55044415	55044515	1121349	0	-	0.52	(0.515,0.57]	chr2	120163	158	INTRON	INTRON	RTN4	ENSG00000115310.19	ENST00000404909.5:ENST00000394611.6:ENST00000317610.11:ENST00000357732.8:ENST00000337526.11:ENST00000357376.7:ENST00000405240.5:ENST00000438462.1:ENST00000427710.5	protein_coding	protein_coding	protein_coding	protein_coding	3	56	2	2.72642	3.66278	4.59914	0.00616166	7.31116e-4	0.0676501	0.0246497
chr16	69325556	69325653	6507733	0	-	0.556701	(0.515,0.57]	chr16	630029	15	INTRON	INTRON	COG8	ENSG00000213380.16	ENST00000564419.1:ENST00000562595.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	32	2	2.56306	3.66275	4.76244	0.0247751	0.00362147	0.131869	0.0533855
chr19	17559765	17559847	7030937	0	+	0.536585	(0.515,0.57]	chr19	700229	4	SS5_PROX	SS5_PROX:INTRON	COLGALT1	ENSG00000130309.12	ENST00000252599.9:ENST00000690947.1:ENST00000597147.2:ENST00000690106.1:ENST00000690841.1:ENST00000692764.1:ENST00000600474.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	32	2	2.56306	3.66275	4.76244	0.0247751	0.00362147	0.131869	0.0533855
chr4	17999254	17999354	2118074	0	-	0.53	(0.515,0.57]	chr4	209157	260	INTRON	INTRON	LCORL	ENSG00000178177.17	ENST00000635767.2:ENST00000326877.8:ENST00000675131.1:ENST00000675143.1:ENST00000637787.1:ENST00000675605.1:ENST00000510451.5:ENST00000675927.1:ENST00000382224.5:ENST00000382226.5:ENST00000676061.1:ENST00000674942.1:ENST00000512376.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	32	2	2.56306	3.66275	4.76244	0.0247751	0.00362147	0.131869	0.0533855
chr8	129877489	129877589	4062528	0	-	0.55	(0.515,0.57]	chr8	369780	56	INTRON	INTRON	CYRIB	ENSG00000153310.21	ENST00000694912.1:ENST00000519824.6:ENST00000523288.5:ENST00000519110.5:ENST00000401979.6:ENST00000523509.5:ENST00000522746.5:ENST00000517654.5:ENST00000522250.5:ENST00000519540.5:ENST00000522941.5:ENST00000519142.5:ENST00000518879.5:ENST00000522702.5:ENST00000521223.5:ENST00000520204.5:ENST00000518283.5:ENST00000523993.5:ENST00000520254.5:ENST00000519020.5:ENST00000518167.5:ENST00000517672.5:ENST00000519070.5:ENST00000522361.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	32	2	2.56306	3.66275	4.76244	0.0247751	0.00362147	0.131869	0.0533855
chr6	150222754	150222854	2997574	0	+	0.42	(0.408,0.44]	chr6	280455	55	INTRON	INTRON	PPP1R14C	ENSG00000198729.5	ENST00000361131.5	protein_coding	protein_coding	protein_coding	protein_coding	3	61	2	1.92319	3.662635	5.40208	0.0247322	2.37882e-4	0.12011	0.0136195
chr10	16733452	16733552	4566606	0	-	0.41	(0.408,0.44]	chr10	421284	59	INTRON	INTRON	RSU1	ENSG00000148484.18	ENST00000345264.10:ENST00000377921.7:ENST00000602389.1:ENST00000464074.6:ENST00000377911.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	47	2	2.49983	3.6625650000000003	4.8253	0.00713527	0.0056738	0.0756118	0.0653997
chr1	247196377	247196476	683955	0	-	0.484848	(0.476,0.515]	chr1	80183	50	INTRON	INTRON	ZNF731P	ENSG00000227671.4	ENST00000421406.1	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	2	47	2	2.48551	3.662565	4.83962	0.00756632	0.00480934	0.0773151	0.0602209
chr2	53926423	53926523	1120117	0	-	0.49	(0.476,0.515]	chr2	120033	4	SS3_PROX	SS3_PROX:INTRON	PSME4	ENSG00000068878.15	ENST00000404125.6:ENST00000389993.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	47	2	2.48551	3.662565	4.83962	0.00756632	0.00480934	0.0773151	0.0602209
chr6	107418602	107418702	3181504	0	-	0.53	(0.515,0.57]	chr6	296346	839	INTRON	INTRON	PDSS2	ENSG00000164494.12	ENST00000369037.9:ENST00000369031.4	protein_coding	protein_coding	protein_coding	protein_coding	4	106	2	3.25533	3.6625449999999997	4.06976	5.5596e-5	3.44919e-5	0.00651834	0.00467863
chr3	28255355	28255454	1390682	0	+	0.454545	(0.44,0.476]	chr3	145636	12	INTRON	INTRON	CMC1	ENSG00000187118.14	ENST00000477739.1:ENST00000423894.5:ENST00000466830.6:ENST00000334841.10:ENST00000418849.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	50	2	2.08277	3.66244	5.24211	0.0309998	4.87398e-4	0.13151	0.0199652
chr1	55163249	55163346	465375	0	-	0.278351	[0,0.28]	chr1	56254	6	INTRON	INTRON	USP24	ENSG00000162402.14	ENST00000294383.7	protein_coding	protein_coding	protein_coding	protein_coding	1	49	2	2.68918	3.662205	4.63523	0.0275571	0.0139836	0.123904	0.10247
chr6	149714611	149714710	3246704	0	-	0.272727	[0,0.28]	chr6	301657	120	INTRON	INTRON	LATS1	ENSG00000131023.13	ENST00000543571.6:ENST00000441107.5:ENST00000392273.7:ENST00000458696.2:ENST00000542720.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	49	2	2.68918	3.662205	4.63523	0.0275571	0.0139836	0.123904	0.10247
chr1	63452064	63452164	470966	0	-	0.3	(0.28,0.32]	chr1	56954	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	ITGB3BP	ENSG00000142856.17	ENST00000271002.15:ENST00000489099.5:ENST00000371092.7:ENST00000461681.5:ENST00000463803.5:ENST00000476508.5:ENST00000460394.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	60	2	2.18092	3.662165	5.14341	0.0271832	0.00185891	0.123904	0.039946
chr6	147735756	147735852	2991355	0	+	0.291667	(0.28,0.32]	chr6	280173	16	INTRON	INTRON	ENSG00000227681	ENSG00000227681.5	ENST00000427015.1:ENST00000432506.5:ENST00000442094.5:ENST00000434985.1	lncRNA	lncRNA	lncRNA	lncRNA	2	60	2	2.18092	3.662165	5.14341	0.0271832	0.00185891	0.123904	0.039946
chr7	75189793	75189890	3557306	0	-	0.319588	(0.28,0.32]	chr7	331283	7	EXON_MRNA	EXON_MRNA:INTRON	GTF2IP1	ENSG00000277053.4	ENST00000618412.4:ENST00000622829.4:ENST00000621948.4:ENST00000616377.4:ENST00000614592.4	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript:transcribed_unprocessed_pseudogene	2	60	2	2.18092	3.662165	5.14341	0.0271832	0.00185891	0.123904	0.039946
chr1	40173368	40173468	80083	0	+	0.26	[0,0.28]	chr1	10405	114	INTRON	INTRON	RLF	ENSG00000117000.9	ENST00000372771.5	protein_coding	protein_coding	protein_coding	protein_coding	1	43	2	2.63238	3.6621449999999998	4.69191	0.0269474	0.0259691	0.133676	0.123442
chr14	69383111	69383209	5916150	0	-	0.27551	[0,0.28]	chr14	562055	21	INTRON	INTRON	ERH	ENSG00000100632.11	ENST00000557016.6:ENST00000216520.6:ENST00000557697.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	43	2	2.63238	3.6621449999999998	4.69191	0.0269474	0.0259691	0.133676	0.123442
chr17	31256886	31256986	6592802	0	+	0.27	[0,0.28]	chr17	641230	27	INTRON	INTRON	NF1	ENSG00000196712.20	ENST00000696138.1:ENST00000356175.7:ENST00000691014.1:ENST00000358273.9:ENST00000579081.5:ENST00000456735.6:ENST00000493220.5:ENST00000466819.5:ENST00000479614.1:ENST00000687863.1:ENST00000696140.1:ENST00000696141.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	43	2	2.63238	3.6621449999999998	4.69191	0.0269474	0.0259691	0.133676	0.123442
chr22	49651626	49651726	7602604	0	-	0.23	[0,0.28]	chr22	778594	242	INTRON	INTRON	MIR3667HG	ENSG00000188511.13	ENST00000414287.5:ENST00000416411.1:ENST00000689875.1:ENST00000400023.5:ENST00000405854.5	lncRNA	lncRNA	lncRNA	lncRNA	1	43	2	2.63238	3.6621449999999998	4.69191	0.0269474	0.0259691	0.133676	0.123442
chr3	141980879	141980979	1833747	0	-	0.18	[0,0.28]	chr3	184307	18	INTRON	INTRON	TFDP2	ENSG00000114126.18	ENST00000489671.6:ENST00000499676.5:ENST00000486111.5:ENST00000477292.5:ENST00000495310.5:ENST00000467072.5:ENST00000487734.5:ENST00000479040.5:ENST00000467667.5:ENST00000478006.5:ENST00000497579.5:ENST00000492919.1:ENST00000464782.5:ENST00000488107.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	43	2	2.63238	3.6621449999999998	4.69191	0.0269474	0.0259691	0.133676	0.123442
chr1	10499703	10499802	23224	0	+	0.434343	(0.408,0.44]	chr1	2503	40	INTRON	INTRON	PEX14	ENSG00000142655.13	ENST00000472851.1:ENST00000356607.9:ENST00000491661.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	47	2	2.07919	3.6620999999999997	5.24501	0.0291499	0.00137378	0.14147	0.0336718
chr1	45657540	45657639	440294	0	-	0.434343	(0.408,0.44]	chr1	53348	15	INTRON	INTRON	GPBP1L1	ENSG00000159592.11	ENST00000290795.7:ENST00000355105.8	protein_coding	protein_coding	protein_coding	protein_coding	2	47	2	2.07919	3.6620999999999997	5.24501	0.0291499	0.00137378	0.14147	0.0336718
chr1	11736834	11736934	25253	0	+	0.65	(0.57,1]	chr1	2739	2	INTRON	INTRON	AGTRAP	ENSG00000177674.16	ENST00000376637.7:ENST00000476512.5:ENST00000400895.6:ENST00000494437.1:ENST00000314340.10:ENST00000491346.5:ENST00000376629.8:ENST00000376627.6:ENST00000452018.6:ENST00000510878.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	24	2	2.52405	3.66208	4.80011	0.0263139	6.07135e-4	0.133676	0.0226059
chrX	3827930	3828028	7746859	0	-	0.581633	(0.57,1]	chrX	793082	9	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	ENSG00000285756	ENSG00000285756.2	ENST00000648217.1:ENST00000425492.5:ENST00000662024.1:ENST00000490920.2:ENST00000475317.5:ENST00000483854.6:ENST00000671495.1:ENST00000486571.1:ENST00000671583.1	lncRNA	lncRNA	lncRNA	lncRNA	1	24	2	2.52405	3.66208	4.80011	0.0263139	6.07135e-4	0.133676	0.0226059
chr7	86940315	86940415	3564228	0	-	0.26	[0,0.28]	chr7	332160	2	SS3_PROX	SS3_PROX:INTRON	ELAPOR2	ENSG00000164659.15	ENST00000450689.7:ENST00000444627.5:ENST00000394714.6:ENST00000416314.5:ENST00000423294.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	44	2	2.8569	3.6620799999999996	4.46726	0.0427997	0.013822	0.148082	0.10247
chr9	111393246	111393314	4314352	0	-	0.279412	[0,0.28]	chr9	396698	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ECPAS	ENSG00000136813.15	ENST00000684092.1:ENST00000338205.9:ENST00000259335.8	protein_coding	protein_coding	protein_coding	protein_coding	1	44	2	2.8569	3.6620799999999996	4.46726	0.0427997	0.013822	0.148082	0.10247
chr2	76021243	76021343	818372	0	+	0.19	[0,0.28]	chr2	91391	1484	INTRON	INTRON	ENSG00000287474	ENSG00000287474.1	ENST00000670606.1	lncRNA	lncRNA	lncRNA	lncRNA	1	43	2	2.43761	3.66193	4.88625	0.0423864	0.0173315	0.161744	0.104099
chr2	224557258	224557358	1336060	0	-	0.23	[0,0.28]	chr2	140159	2	SS5_PROX	SS5_PROX:INTRON	CUL3	ENSG00000036257.14	ENST00000344951.8:ENST00000264414.9:ENST00000409096.5:ENST00000409777.5:ENST00000432260.2:ENST00000436172.1:ENST00000546102.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	43	2	2.43761	3.66193	4.88625	0.0423864	0.0173315	0.161744	0.104099
chr6	68660726	68660826	2886573	0	+	0.28	[0,0.28]	chr6	273730	209	INTRON	INTRON	ADGRB3	ENSG00000135298.15	ENST00000370598.6:ENST00000684661.1:ENST00000546190.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	43	2	2.43761	3.66193	4.88625	0.0423864	0.0173315	0.161744	0.104099
chr6	68722610	68722710	2887192	0	+	0.27	[0,0.28]	chr6	273730	828	INTRON	INTRON	ADGRB3	ENSG00000135298.15	ENST00000370598.6:ENST00000684661.1:ENST00000546190.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	43	2	2.43761	3.66193	4.88625	0.0423864	0.0173315	0.161744	0.104099
chr17	58002918	58003018	6800006	0	-	0.52	(0.515,0.57]	chr17	671424	21	UTR3	UTR3:EXON_MRNA:INTRON	ENSG00000266086:SRSF1	ENSG00000266086.3:ENSG00000136450.13	ENST00000578794.2:ENST00000665125.1:ENST00000258962.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	13	338	2	3.48785	3.661895	3.83594	7.35105e-8	4.713e-8	1.14734e-4	8.91482e-5
chr5	78212254	78212354	2650314	0	-	0.34	(0.32,0.35]	chr5	251746	302	INTRON	INTRON	AP3B1	ENSG00000132842.15	ENST00000519295.6:ENST00000255194.11:ENST00000695515.1:ENST00000695454.1:ENST00000695511.1:ENST00000695453.1:ENST00000695455.1:ENST00000695513.1:ENST00000695488.1:ENST00000695450.1:ENST00000695507.1:ENST00000695512.1:ENST00000695510.1:ENST00000695451.1:ENST00000695447.1:ENST00000695505.1:ENST00000519888.6:ENST00000695514.1:ENST00000517940.2:ENST00000517561.2:ENST00000695452.1:ENST00000695449.1:ENST00000695540.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	51	2	2.13945	3.6618	5.18415	0.0254517	0.00333629	0.133676	0.0512081
chr3	172250759	172250859	1561668	0	+	0.33	(0.32,0.35]	chr3	161577	1	SS3_PROX	SS3_PROX:INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000469491.5:ENST00000336824.8:ENST00000416957.5:ENST00000443501.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	53	2	2.6297	3.6617500000000005	4.6938	0.0137794	0.00476699	0.0949306	0.0636201
chr2	131079790	131079890	1228955	0	-	0.45	(0.44,0.476]	chr2	130987	75	INTRON	INTRON	FAM168B	ENSG00000152102.18	ENST00000389915.4:ENST00000409185.5	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	3.08591	3.66173	4.23755	0.0263357	0.00481262	0.122221	0.0638089
chr11	33160099	33160198	4940966	0	-	0.333333	(0.32,0.35]	chr11	462884	29	INTRON	INTRON	CSTF3	ENSG00000176102.13	ENST00000323959.9:ENST00000524827.6:ENST00000526480.1:ENST00000438862.6:ENST00000431742.2:ENST00000524556.1:ENST00000524775.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	56	2	2.09005	3.6616600000000004	5.23327	0.0330483	9.33826e-4	0.133816	0.0278746
chr19	908204	908304	7110888	0	-	0.5	(0.476,0.515]	chr19	714174	52	INTRON	INTRON	R3HDM4	ENSG00000198858.10	ENST00000589428.5:ENST00000361574.10:ENST00000587975.2:ENST00000590454.2:ENST00000589445.1:ENST00000626716.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	56	2	2.11679	3.66162	5.20645	0.0115627	0.00136049	0.0962115	0.0336321
chr10	72756098	72756197	4450735	0	+	0.444444	(0.44,0.476]	chr10	410760	192	INTRON	INTRON	MCU	ENSG00000156026.15	ENST00000373053.8:ENST00000357157.10:ENST00000604679.5:ENST00000604372.5:ENST00000603649.5:ENST00000605597.5:ENST00000536019.5:ENST00000604152.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	35	2	2.49112	3.66157	4.83202	0.0315968	0.00525002	0.144381	0.0633615
chr14	76402797	76402897	5798030	0	+	0.45	(0.44,0.476]	chr14	549239	260	INTRON	INTRON	ESRRB	ENSG00000119715.15	ENST00000512784.6:ENST00000380887.7:ENST00000505752.6:ENST00000644823.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	35	2	2.49112	3.66157	4.83202	0.0315968	0.00525002	0.144381	0.0633615
chr2	47404701	47404801	773541	0	+	0.45	(0.44,0.476]	chr2	87237	9	INTRON	INTRON	MSH2	ENSG00000095002.15	ENST00000543555.6:ENST00000644092.1:ENST00000645339.1:ENST00000646415.1:ENST00000645506.1:ENST00000406134.5:ENST00000233146.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	35	2	2.49112	3.66157	4.83202	0.0315968	0.00525002	0.144381	0.0633615
chr5	10225989	10226086	2566908	0	-	0.463918	(0.44,0.476]	chr5	246023	6	UTR3	UTR3:EXON_MRNA	ATPSCKMT	ENSG00000150756.14	ENST00000511437.6	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	2.49112	3.66157	4.83202	0.0315968	0.00525002	0.144381	0.0633615
chr8	222014	222114	3883248	0	-	0.45	(0.44,0.476]	chr8	357290	22	INTRON	INTRON	RPL23AP53	ENSG00000223508.5	ENST00000606975.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	1	35	2	2.49112	3.66157	4.83202	0.0315968	0.00525002	0.144381	0.0633615
chr11	63725418	63725518	4800356	0	+	0.4	(0.378,0.408]	chr11	444952	40	INTRON	INTRON	RTN3	ENSG00000133318.14	ENST00000341307.6:ENST00000356000.7:ENST00000542238.5:ENST00000339997.8:ENST00000540798.5:ENST00000537981.5:ENST00000377819.10:ENST00000536011.5:ENST00000543123.1:ENST00000354497.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	57	2	1.94559	3.66149	5.37739	0.0211434	0.0010014	0.122929	0.0288906
chr22	21615858	21615958	7482188	0	+	0.45	(0.44,0.476]	chr22	763251	8	INTRON	INTRON	UBE2L3	ENSG00000185651.16	ENST00000458578.6:ENST00000545681.2:ENST00000696046.1:ENST00000342192.9:ENST00000496722.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	173	2	2.98588	3.661475	4.33707	2.07695e-5	1.3924e-5	0.00371583	0.00278668
chr21	44138674	44138772	7416331	0	+	0.663265	(0.57,1]	chr21	756033	10	INTRON	INTRON	GATD3	ENSG00000160221.18	ENST00000644251.1:ENST00000645487.1:ENST00000495007.5:ENST00000427803.6:ENST00000493883.5:ENST00000480786.1:ENST00000348499.9:ENST00000291577.11:ENST00000389690.7:ENST00000646873.1:ENST00000419699.1:ENST00000449622.6:ENST00000642815.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	43	2	3.63124	3.66146	3.69168	2.87208e-4	2.1608e-4	0.0150568	0.0134537
chr19	52656683	52656783	7206793	0	-	0.47	(0.44,0.476]	chr19	731404	6	INTRON	INTRON	ZNF83:ENSG00000269825	ENSG00000167766.20:ENSG00000269825.2	ENST00000600714.5:ENST00000601257.5:ENST00000594682.6:ENST00000687234.1:ENST00000598536.5:ENST00000595171.5:ENST00000596440.5:ENST00000602232.5:ENST00000598322.2:ENST00000598190.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	50	2	2.13779	3.6612999999999998	5.18481	0.0264596	6.21872e-4	0.122506	0.0223951
chr17	67115589	67115687	6824497	0	-	0.357143	(0.35,0.378]	chr17	674390	8	INTRON	INTRON	HELZ	ENSG00000198265.12	ENST00000358691.10:ENST00000579953.5:ENST00000580168.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	37	2	2.92952	3.6612750000000003	4.39303	0.0237246	0.00881187	0.118716	0.084878
chr5	65965372	65965461	2371232	0	+	0.269663	[0,0.28]	chr5	228473	1	EXON_LNCRNA	EXON_LNCRNA:INTRON	ERBIN:ENSG00000286314	ENSG00000112851.15:ENSG00000286314.1	ENST00000380943.6:ENST00000507490.1:ENST00000416865.6:ENST00000380935.5:ENST00000284037.10:ENST00000380938.6:ENST00000511297.5:ENST00000506030.5:ENST00000663947.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA:processed_transcript	3	71	2	2.06426	3.661205	5.25815	0.0168952	0.0066548	0.110899	0.0703807
chr9	107330997	107331093	4183867	0	+	0.229167	[0,0.28]	chr9	381597	15	UTR3	UTR3:EXON_MRNA:INTRON	RAD23B	ENSG00000119318.13	ENST00000358015.8:ENST00000416373.6:ENST00000457811.1	protein_coding	protein_coding	protein_coding	protein_coding	1	52	2	2.9385	3.66113	4.38376	0.0258536	0.0142776	0.133676	0.0963703
chr7	66406000	66406099	3538548	0	-	0.333333	(0.32,0.35]	chr7	330104	31	INTRON	INTRON	LINC00174	ENSG00000179406.9	ENST00000638517.1:ENST00000640964.1	lncRNA	lncRNA	lncRNA	lncRNA	2	53	2	1.81328	3.660905	5.50853	0.0615716	0.0010959399999999999	0.193423	0.0304174
chr14	101806018	101806118	5818943	0	+	0.23	[0,0.28]	chr14	551836	28	INTRON	INTRON	PPP2R5C	ENSG00000078304.20	ENST00000694906.1:ENST00000422945.6:ENST00000554442.5:ENST00000556068.5:ENST00000328724.9:ENST00000554504.1:ENST00000553890.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	62	2	2.62985	3.6608799999999997	4.69191	0.0269474	0.00581422	0.123442	0.068681
chr10	70721325	70721425	4447814	0	+	0.31	(0.28,0.32]	chr10	410378	122	INTRON	INTRON	ADAMTS14	ENSG00000138316.11	ENST00000373207.2:ENST00000373208.5	protein_coding	protein_coding	protein_coding	protein_coding	5	92	2	1.48049	3.6607900000000004	5.84109	0.0503127	1.04715e-4	0.156383	0.00863456
chr12	46432035	46432135	5125016	0	+	0.46	(0.44,0.476]	chr12	483428	194	INTRON	INTRON	ENSG00000257261	ENSG00000257261.7	ENST00000687751.1:ENST00000667191.1:ENST00000663959.1:ENST00000666025.1:ENST00000611243.2:ENST00000666942.1:ENST00000551503.5:ENST00000657145.1	lncRNA	lncRNA	lncRNA	lncRNA	1	36	2	2.29425	3.66064	5.02703	0.0518406	0.00278015	0.176696	0.0469265
chr16	70504553	70504652	6511723	0	-	0.454545	(0.44,0.476]	chr16	630752	31	INTRON	INTRON	COG4	ENSG00000103051.20	ENST00000564415.6:ENST00000323786.10:ENST00000530314.5:ENST00000393612.8:ENST00000674443.1:ENST00000482252.5:ENST00000526700.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	36	2	2.29425	3.66064	5.02703	0.0518406	0.00278015	0.176696	0.0469265
chr9	72129099	72129199	4141059	0	+	0.46	(0.44,0.476]	chr9	377405	139	INTRON	INTRON	GDA	ENSG00000119125.17	ENST00000545168.5	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	2.29425	3.66064	5.02703	0.0518406	0.00278015	0.176696	0.0469265
chr1	65530609	65530709	138291	0	+	0.46	(0.44,0.476]	chr1	15499	44	INTRON	INTRON	LEPR	ENSG00000116678.20	ENST00000371060.7:ENST00000371059.7:ENST00000349533.11:ENST00000616738.4:ENST00000344610.12:ENST00000462765.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	102	2	3.31275	3.6605999999999996	4.00845	1.73222e-4	1.1799e-4	0.0114086	0.00984015
chr10	90901151	90901246	4485629	0	+	0.473684	(0.44,0.476]	chr10	412927	6	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	RPP30	ENSG00000148688.14	ENST00000413330.5:ENST00000371703.8:ENST00000480406.6:ENST00000489806.5:ENST00000470933.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	77	2	3.63638	3.660555	3.68473	5.47507e-4	4.74104e-4	0.0215463	0.0196816
chr11	31496407	31496506	4939109	0	-	0.292929	(0.28,0.32]	chr11	462601	78	INTRON	INTRON	IMMP1L	ENSG00000148950.11	ENST00000532287.6:ENST00000534812.5:ENST00000526776.5:ENST00000278200.5:ENST00000648582.1:ENST00000533642.1:ENST00000527184.5:ENST00000528161.5:ENST00000532624.5:ENST00000529749.5:ENST00000530023.5:ENST00000531693.1:ENST00000532668.1:ENST00000533921.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	42	2	3.07744	3.66032	4.2432	0.0479043	0.00604536	0.153019	0.0700813
chr7	105043118	105043217	3374913	0	+	0.292929	(0.28,0.32]	chr7	315877	17	INTRON	INTRON	KMT2E	ENSG00000005483.22	ENST00000622386.2:ENST00000257745.9:ENST00000334884.9:ENST00000311117.8:ENST00000478990.5:ENST00000495267.5:ENST00000476671.5:ENST00000667857.1:ENST00000474203.5:ENST00000482560.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	42	2	3.07744	3.66032	4.2432	0.0479043	0.00604536	0.153019	0.0700813
chr1	196692275	196692375	286403	0	+	0.34	(0.32,0.35]	chr1	32939	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	CFH:ENSG00000289697	ENSG00000000971.17:ENSG00000289697.1	ENST00000359637.3:ENST00000695968.1:ENST00000696032.1:ENST00000695970.1:ENST00000695971.1:ENST00000695972.1:ENST00000470918.2:ENST00000695969.1:ENST00000695973.1:ENST00000695974.1:ENST00000696033.1:ENST00000695975.1:ENST00000695976.1:ENST00000695981.1:ENST00000695980.1:ENST00000695978.1:ENST00000695979.1:ENST00000696026.1:ENST00000696027.1:ENST00000696028.1:ENST00000696029.1:ENST00000695983.1:ENST00000696025.1:ENST00000696024.1:ENST00000696023.1:ENST00000696019.1:ENST00000696020.1:ENST00000696021.1:ENST00000696022.1:ENST00000696018.1:ENST00000695984.1:ENST00000367429.9:ENST00000696030.1:ENST00000630130.2:ENST00000696031.1:ENST00000695986.1:ENST00000695987.1:ENST00000466229.5:ENST00000695977.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	38	2	2.78073	3.660305	4.53988	0.0202178	0.01481	0.109913	0.106702
chr12	70330944	70331038	5167329	0	+	0.340426	(0.32,0.35]	chr12	489451	6	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	CNOT2	ENSG00000111596.14	ENST00000418359.7:ENST00000550160.5:ENST00000548021.5:ENST00000550641.6:ENST00000229195.8:ENST00000552915.5:ENST00000549443.5:ENST00000552483.5:ENST00000548159.5:ENST00000551043.5:ENST00000548599.5:ENST00000550194.5:ENST00000551873.5:ENST00000552151.2:ENST00000548863.1:ENST00000548230.1:ENST00000547149.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	71	2	1.54741	3.660305	5.7732	0.0473733	3.96807e-4	0.169265	0.0185763
chr13	95678336	95678436	5517207	0	+	0.34	(0.32,0.35]	chr13	527643	6	INTRON	INTRON	DNAJC3	ENSG00000102580.15	ENST00000602402.6:ENST00000376795.6	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	2.78073	3.660305	4.53988	0.0202178	0.01481	0.109913	0.106702
chr15	42856396	42856496	6158358	0	-	0.35	(0.32,0.35]	chr15	586281	8	INTRON	INTRON	TTBK2	ENSG00000128881.18	ENST00000267890.11:ENST00000567840.5:ENST00000567274.5:ENST00000564431.5:ENST00000562880.5:ENST00000566931.1:ENST00000567485.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	38	2	2.78073	3.660305	4.53988	0.0202178	0.01481	0.109913	0.106702
chr4	119442812	119442908	2230587	0	-	0.322917	(0.32,0.35]	chr4	218518	2	INTRON	INTRON	GTF2IP12	ENSG00000283050.3	ENST00000634317.1:ENST00000456547.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	1	38	2	2.78073	3.660305	4.53988	0.0202178	0.01481	0.109913	0.106702
chr6	87543923	87544022	3152166	0	-	0.343434	(0.32,0.35]	chr6	294026	14	INTRON	INTRON	RARS2	ENSG00000146282.19	ENST00000691533.1:ENST00000493269.2:ENST00000685069.1:ENST00000691725.1:ENST00000369536.10:ENST00000693431.1:ENST00000685408.1:ENST00000693327.1:ENST00000691205.1:ENST00000689174.1:ENST00000692684.1:ENST00000686988.1:ENST00000690622.1:ENST00000689206.1:ENST00000688532.1:ENST00000686154.1:ENST00000686407.1:ENST00000685701.1:ENST00000689561.1:ENST00000691238.1:ENST00000685336.1:ENST00000686284.1:ENST00000687586.1:ENST00000685376.1:ENST00000685881.1:ENST00000691815.1:ENST00000687090.1:ENST00000451155.2:ENST00000687437.1:ENST00000692394.1:ENST00000687729.1:ENST00000693605.1:ENST00000687909.1:ENST00000688391.1:ENST00000690884.1:ENST00000692843.1:ENST00000684790.1:ENST00000692270.1:ENST00000685219.1:ENST00000689952.1:ENST00000687579.1:ENST00000686857.1:ENST00000690205.1:ENST00000690705.1:ENST00000686142.1:ENST00000688106.1:ENST00000686196.1:ENST00000687078.1:ENST00000690555.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	38	2	2.78073	3.660305	4.53988	0.0202178	0.01481	0.109913	0.106702
chr7	98386598	98386698	3581810	0	-	0.35	(0.32,0.35]	chr7	333586	238	INTRON	INTRON	BAIAP2L1	ENSG00000006453.14	ENST00000005260.9:ENST00000462558.5:ENST00000479789.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	38	2	2.78073	3.660305	4.53988	0.0202178	0.01481	0.109913	0.106702
chr1	204533618	204533718	297594	0	+	0.44	(0.408,0.44]	chr1	34289	4	INTRON	INTRON	MDM4	ENSG00000198625.14	ENST00000367183.7:ENST00000391947.6:ENST00000454264.6:ENST00000612738.4:ENST00000614459.4:ENST00000616250.4:ENST00000367182.8:ENST00000463049.5:ENST00000470908.5:ENST00000471783.1:ENST00000367180.5:ENST00000507825.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	123	2	3.20763	3.660275	4.11292	7.24958e-5	5.89253e-5	0.00767535	0.00630001
chr4	99039565	99039665	2003159	0	+	0.44	(0.408,0.44]	chr4	199852	1	SS5_PROX	SS5_PROX:INTRON	METAP1	ENSG00000164024.12	ENST00000296411.11:ENST00000507537.5:ENST00000503247.5:ENST00000510107.5:ENST00000513199.5:ENST00000513097.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	125	2	3.41504	3.6602550000000003	3.90547	2.03612e-4	1.62579e-5	0.0129859	0.00304426
chr14	76315011	76315111	5797149	0	+	0.47	(0.44,0.476]	chr14	549230	37	INTRON	INTRON	ESRRB	ENSG00000119715.15	ENST00000512784.6	protein_coding	protein_coding	protein_coding	protein_coding	4	64	2	1.96805	3.66016	5.35227	0.0109533	8.47974e-4	0.0925675	0.0267232
chrX	123656955	123657055	7878284	0	-	0.42	(0.408,0.44]	chrX	802527	112	INTRON	INTRON	THOC2	ENSG00000125676.20	ENST00000245838.13:ENST00000355725.8:ENST00000491737.5	protein_coding	protein_coding	protein_coding	protein_coding	3	61	2	2.64127	3.6601049999999997	4.67894	0.0087648	0.00125199	0.0788605	0.0328543
chr1	31046029	31046129	412699	0	-	0.51	(0.476,0.515]	chr1	49733	168	INTRON	INTRON	PUM1	ENSG00000134644.16	ENST00000426105.7:ENST00000373747.7:ENST00000257075.9:ENST00000424085.6:ENST00000525843.5:ENST00000440538.6:ENST00000373741.8:ENST00000373742.6:ENST00000526215.5:ENST00000525948.5:ENST00000480602.1:ENST00000524516.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	35	2	2.87879	3.6600349999999997	4.44128	0.0151924	0.00999149	0.0994339	0.0879541
chr12	50114999	50115098	5135731	0	+	0.494949	(0.476,0.515]	chr12	484313	17	INTRON	INTRON	COX14:ENSG00000272368	ENSG00000178449.9:ENSG00000272368.2	ENST00000317943.6:ENST00000548468.2:ENST00000550654.1:ENST00000550487.6:ENST00000548985.1:ENST00000552815.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	1	35	2	2.87879	3.6600349999999997	4.44128	0.0151924	0.00999149	0.0994339	0.0879541
chr4	26421474	26421568	1937698	0	+	0.510638	(0.476,0.515]	chr4	194444	9	EXON_MRNA	EXON_MRNA:INTRON	RBPJ	ENSG00000168214.22	ENST00000681799.1:ENST00000681403.1:ENST00000342295.6:ENST00000512671.6:ENST00000345843.8:ENST00000361572.10:ENST00000514380.5:ENST00000348160.9:ENST00000681506.1:ENST00000509158.6:ENST00000691085.1:ENST00000692303.1:ENST00000681856.1:ENST00000681025.1:ENST00000681679.1:ENST00000680210.1:ENST00000355476.8:ENST00000680140.1:ENST00000680511.1:ENST00000510778.7:ENST00000679698.1:ENST00000679469.1:ENST00000681484.1:ENST00000505958.6:ENST00000507561.5:ENST00000507574.5:ENST00000515573.5:ENST00000689192.1:ENST00000680928.1:ENST00000681260.1:ENST00000681093.1:ENST00000504423.2:ENST00000342320.8:ENST00000504907.5:ENST00000681264.1:ENST00000680204.1:ENST00000515023.6:ENST00000506903.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	35	2	2.87879	3.6600349999999997	4.44128	0.0151924	0.00999149	0.0994339	0.0879541
chr7	77771662	77771761	3343830	0	+	0.494949	(0.476,0.515]	chr7	311464	25	INTRON	INTRON	RSBN1L	ENSG00000187257.16	ENST00000334955.13:ENST00000445288.5:ENST00000445512.5:ENST00000468035.1:ENST00000462800.1:ENST00000441514.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	35	2	2.87879	3.6600349999999997	4.44128	0.0151924	0.00999149	0.0994339	0.0879541
chrX	71537422	71537516	7679989	0	+	0.468085	(0.44,0.476]	chrX	786391	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	OGT	ENSG00000147162.14	ENST00000373719.8:ENST00000488174.5:ENST00000373701.7:ENST00000498566.3:ENST00000444774.3:ENST00000455587.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	64	2	1.70242	3.65996	5.6175	0.0282713	2.84938e-4	0.137721	0.015495
chr2	24018829	24018925	707831	0	+	0.479167	(0.476,0.515]	chr2	82008	2	INTRON	INTRON	MFSD2B	ENSG00000205639.12	ENST00000669179.1:ENST00000406420.7:ENST00000338315.6:ENST00000469562.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	60	2	1.97402	3.659955	5.34589	0.0206778	3.224e-4	0.110999	0.0159645
chr11	76130899	76130999	4835357	0	+	0.33	(0.32,0.35]	chr11	451013	145	INTRON	INTRON	UVRAG	ENSG00000198382.9	ENST00000356136.8:ENST00000528420.5:ENST00000533454.5:ENST00000531818.5:ENST00000532130.1:ENST00000525183.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	38	2	2.48693	3.6599	4.83287	0.0338094	0.0095071	0.146709	0.0817766
chr8	47939950	47940032	3945554	0	-	0.329268	(0.32,0.35]	chr8	361938	1	SS3_PROX	SS3_PROX:INTRON	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	2.48693	3.6599	4.83287	0.0338094	0.0095071	0.146709	0.0817766
chr1	45587362	45587461	93231	0	+	0.565657	(0.515,0.57]	chr1	12558	28	INTRON	INTRON	NASP	ENSG00000132780.17	ENST00000437901.6:ENST00000537798.5:ENST00000437362.6:ENST00000350030.8:ENST00000464190.6:ENST00000527359.5:ENST00000528084.5:ENST00000453748.5:ENST00000525515.5:ENST00000527470.5:ENST00000529333.5:ENST00000531532.5:ENST00000530840.5:ENST00000528238.5:ENST00000534101.1:ENST00000470768.5:ENST00000372052.8:ENST00000351223.7:ENST00000629893.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	35	2	3.03037	3.65979	4.28921	0.00990051	0.00608732	0.0877296	0.0676501
chr2	235719291	235719391	1043596	0	+	0.45	(0.44,0.476]	chr2	111247	5	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1:ENST00000402604.6:ENST00000409538.5:ENST00000614409.4:ENST00000619456.4:ENST00000428334.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	37	2	2.46135	3.6597600000000003	4.85817	0.0374637	0.00223254	0.140008	0.0435144
chr7	157374625	157374725	3455691	0	+	0.45	(0.44,0.476]	chr7	323102	25	INTRON	INTRON	DNAJB6	ENSG00000105993.15	ENST00000441561.5:ENST00000429029.6:ENST00000262177.9:ENST00000417758.5:ENST00000459889.5:ENST00000443280.5:ENST00000441291.5:ENST00000412557.5:ENST00000634080.1:ENST00000468928.5:ENST00000465908.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	37	2	2.46135	3.6597600000000003	4.85817	0.0374637	0.00223254	0.140008	0.0435144
chr4	39921557	39921651	2131637	0	-	0.37234	(0.35,0.378]	chr4	210218	8	INTRON	INTRON	PDS5A	ENSG00000121892.15	ENST00000303538.13:ENST00000503396.5:ENST00000513798.1	protein_coding	protein_coding	protein_coding	protein_coding	2	49	2	2.39583	3.65969	4.92355	0.0107976	0.00573514	0.0920575	0.0657377
chr12	122607003	122607102	5241447	0	+	0.454545	(0.44,0.476]	chr12	497848	12	INTRON	INTRON	KNTC1	ENSG00000184445.12	ENST00000450485.6:ENST00000333479.12:ENST00000436959.7:ENST00000546125.1	protein_coding	protein_coding	protein_coding	protein_coding	1	37	2	2.5364	3.6596650000000004	4.78293	0.0309324	0.00292033	0.13151	0.0494641
chr3	33635070	33635170	1653164	0	-	0.46	(0.44,0.476]	chr3	169635	23	INTRON	INTRON	CLASP2	ENSG00000163539.18	ENST00000399362.8:ENST00000682230.1:ENST00000468888.6:ENST00000359576.9:ENST00000650653.1:ENST00000480013.6:ENST00000461133.8:ENST00000635664.1:ENST00000313350.10:ENST00000487200.5:ENST00000333778.10:ENST00000485378.6:ENST00000496954.2:ENST00000476433.5:ENST00000482896.5:ENST00000498331.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	37	2	2.5364	3.6596650000000004	4.78293	0.0309324	0.00292033	0.13151	0.0494641
chr9	77861965	77862065	4270249	0	-	0.47	(0.44,0.476]	chr9	392874	458	INTRON	INTRON	GNAQ	ENSG00000156052.11	ENST00000286548.9:ENST00000411677.1	protein_coding	protein_coding	protein_coding	protein_coding	1	37	2	2.5364	3.6596650000000004	4.78293	0.0309324	0.00292033	0.13151	0.0494641
chr4	2911415	2911513	1915723	0	+	0.357143	(0.35,0.378]	chr4	192335	16	INTRON	INTRON	ADD1	ENSG00000087274.19	ENST00000683351.1:ENST00000398125.5:ENST00000264758.11:ENST00000513328.6:ENST00000503455.6:ENST00000355842.7:ENST00000651918.1:ENST00000398129.5:ENST00000398123.6:ENST00000514940.5:ENST00000541051.5:ENST00000513762.2:ENST00000536424.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	152	2	3.1962	3.659615	4.12303	5.54078e-4	1.46022e-6	0.0216641	7.23568e-4
chr6	104778689	104778786	3171665	0	-	0.484536	(0.476,0.515]	chr6	295843	10	INTRON	INTRON	HACE1	ENSG00000085382.12	ENST00000262903.9:ENST00000369127.8:ENST00000416605.6:ENST00000517995.5:ENST00000369125.6:ENST00000518503.5:ENST00000517424.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	36	2	3.07422	3.6596149999999996	4.24501	0.0247713	0.00506023	0.12011	0.0646039
chr9	98069364	98069463	4173504	0	+	0.494949	(0.476,0.515]	chr9	380322	80	INTRON	INTRON	NANS	ENSG00000095380.11	ENST00000210444.6:ENST00000495319.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	36	2	3.07422	3.6596149999999996	4.24501	0.0247713	0.00506023	0.12011	0.0646039
chr12	122612517	122612611	5241505	0	+	0.478723	(0.476,0.515]	chr12	497859	9	INTRON	INTRON	KNTC1	ENSG00000184445.12	ENST00000450485.6:ENST00000333479.12:ENST00000436959.7:ENST00000546125.1:ENST00000542727.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	35	2	2.47949	3.659555	4.83962	0.0326974	0.00480934	0.145164	0.0602209
chr15	66515125	66515225	6050412	0	+	0.49	(0.476,0.515]	chr15	576127	2	SS3_PROX	SS3_PROX:INTRON	ZWILCH	ENSG00000174442.12	ENST00000535141.6:ENST00000613446.4:ENST00000446801.6:ENST00000565627.5:ENST00000563698.5:ENST00000564179.5:ENST00000567926.5:ENST00000307897.10:ENST00000565960.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	35	2	2.47949	3.659555	4.83962	0.0326974	0.00480934	0.145164	0.0602209
chr17	27562141	27562240	6581828	0	+	0.50505	(0.476,0.515]	chr17	639682	13	INTRON	INTRON	KSR1	ENSG00000141068.15	ENST00000644974.2:ENST00000583370.5:ENST00000398988.7:ENST00000268763.10:ENST00000509603.6:ENST00000582311.1:ENST00000398985.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	35	2	2.47949	3.659555	4.83962	0.0326974	0.00480934	0.145164	0.0602209
chr11	68477795	68477895	4817503	0	+	0.42	(0.408,0.44]	chr11	448907	166	INTRON	INTRON	PPP6R3	ENSG00000110075.15	ENST00000530427.5:ENST00000528635.5:ENST00000529907.5:ENST00000533127.5:ENST00000534534.5:ENST00000529344.5:ENST00000524845.5:ENST00000393800.7:ENST00000265637.8:ENST00000524904.5:ENST00000393801.7:ENST00000265636.9:ENST00000529710.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	35	2	2.89193	3.65953	4.42713	0.0173083	0.00950364	0.104099	0.0863579
chr11	125619150	125619240	4882908	0	+	0.411111	(0.408,0.44]	chr11	456526	2	INTRON	INTRON	STT3A	ENSG00000134910.14	ENST00000529196.5:ENST00000392708.9:ENST00000649491.1:ENST00000531491.5:ENST00000525946.5:ENST00000526364.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	35	2	2.89193	3.65953	4.42713	0.0173083	0.00950364	0.104099	0.0863579
chr12	110021007	110021107	5224907	0	+	0.41	(0.408,0.44]	chr12	495033	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	ANKRD13A	ENSG00000076513.17	ENST00000553025.5:ENST00000261739.9:ENST00000550404.1:ENST00000547639.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	35	2	2.89193	3.65953	4.42713	0.0173083	0.00950364	0.104099	0.0863579
chr2	131070755	131070855	1228864	0	-	0.43	(0.408,0.44]	chr2	130981	147	INTRON	INTRON	FAM168B	ENSG00000152102.18	ENST00000389915.4:ENST00000409185.5	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	2.89193	3.65953	4.42713	0.0173083	0.00950364	0.104099	0.0863579
chr20	32383935	32384035	7256082	0	+	0.41	(0.408,0.44]	chr20	737076	115	INTRON	INTRON	ASXL1	ENSG00000171456.21	ENST00000651418.1:ENST00000375687.10:ENST00000613218.4:ENST00000644587.1:ENST00000620121.4:ENST00000646985.1:ENST00000643168.1:ENST00000306058.9:ENST00000645688.1:ENST00000470145.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	35	2	2.89193	3.65953	4.42713	0.0173083	0.00950364	0.104099	0.0863579
chrX	153917145	153917244	7911597	0	-	0.414141	(0.408,0.44]	chrX	805259	29	INTRON	INTRON	ARHGAP4	ENSG00000089820.16	ENST00000393721.5:ENST00000370028.7:ENST00000420383.5:ENST00000350060.10:ENST00000370016.5:ENST00000470209.5:ENST00000494302.5:ENST00000404127.6:ENST00000494813.5:ENST00000422918.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	35	2	2.89193	3.65953	4.42713	0.0173083	0.00950364	0.104099	0.0863579
chr12	760703	760803	5056258	0	+	0.31	(0.28,0.32]	chr12	477423	60	INTRON	INTRON	WNK1	ENSG00000060237.19	ENST00000315939.11:ENST00000340908.9:ENST00000535572.5:ENST00000537687.5:ENST00000530271.6:ENST00000447667.2	protein_coding	protein_coding	protein_coding	protein_coding	4	74	2	1.76061	3.6595299999999997	5.55845	0.0253826	0.00141854	0.133676	0.0340865
chr11	64202498	64202592	4802211	0	+	0.489362	(0.476,0.515]	chr11	445298	2	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	STIP1	ENSG00000168439.17	ENST00000358794.9:ENST00000305218.9:ENST00000536973.5:ENST00000538945.5:ENST00000540887.1:ENST00000355603.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	38	2	2.13854	3.659465	5.18039	0.0776563	6.58744e-4	0.196285	0.0232396
chr2	24588254	24588354	710230	0	+	0.49	(0.476,0.515]	chr2	82224	33	INTRON	INTRON	NCOA1	ENSG00000084676.16	ENST00000348332.8:ENST00000496333.5:ENST00000406961.5:ENST00000405141.5:ENST00000407230.5:ENST00000483904.5:ENST00000288599.9:ENST00000395856.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	38	2	2.13854	3.659465	5.18039	0.0776563	6.58744e-4	0.196285	0.0232396
chr7	73050045	73050145	3330686	0	+	0.5	(0.476,0.515]	chr7	309678	9	INTRON	INTRON	ENSG00000285702	ENSG00000285702.1	ENST00000650609.1	lncRNA	lncRNA	lncRNA	lncRNA	1	38	2	2.13854	3.659465	5.18039	0.0776563	6.58744e-4	0.196285	0.0232396
chr12	98597355	98597424	5199023	0	+	0.362319	(0.35,0.378]	chr12	491860	1	SS3_PROX	SS3_PROX:INTRON	SLC25A3	ENSG00000075415.15	ENST00000401722.7:ENST00000188376.9:ENST00000551917.5:ENST00000546766.5:ENST00000228318.8:ENST00000552981.6:ENST00000547534.5:ENST00000550695.1:ENST00000551123.5:ENST00000549338.5:ENST00000548847.1:ENST00000547908.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	49	2	2.10859	3.6593850000000003	5.21018	0.0272722	0.00228003	0.136494	0.0426265
chr2	61322202	61322301	1129043	0	-	0.363636	(0.35,0.378]	chr2	121386	25	INTRON	INTRON	USP34	ENSG00000115464.15	ENST00000398571.7	protein_coding	protein_coding	protein_coding	protein_coding	2	49	2	2.10859	3.6593850000000003	5.21018	0.0272722	0.00228003	0.136494	0.0426265
chr9	129835797	129835897	4210452	0	+	0.55	(0.515,0.57]	chr9	385866	2	SS5_PROX	SS5_PROX:INTRON	USP20	ENSG00000136878.14	ENST00000491053.5:ENST00000494971.2:ENST00000372429.8:ENST00000315480.9:ENST00000358355.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	67	2	3.58035	3.6592200000000004	3.73809	5.21239e-4	3.11298e-4	0.0204523	0.0162055
chr6	85620113	85620211	3151216	0	-	0.530612	(0.515,0.57]	chr6	293877	3	INTRON	INTRON	ENSG00000271793:SYNCRIP	ENSG00000271793.2:ENSG00000135316.19	ENST00000682083.1:ENST00000683074.1:ENST00000681965.1:ENST00000682504.1:ENST00000682106.1:ENST00000683364.1:ENST00000683436.1:ENST00000684220.1:ENST00000683909.1:ENST00000684462.1:ENST00000616122.5:ENST00000678528.1:ENST00000676637.1:ENST00000677771.1:ENST00000355238.11:ENST00000678878.1:ENST00000677481.1:ENST00000677646.1:ENST00000676630.1:ENST00000678618.1:ENST00000676542.1:ENST00000677059.1:ENST00000444272.2:ENST00000678899.1:ENST00000369622.8:ENST00000678355.1:ENST00000676688.1:ENST00000677514.1:ENST00000678816.1:ENST00000678930.1:ENST00000678589.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	58	2	1.9888	3.659185	5.32957	0.00963364	4.06834e-4	0.086971	0.0185763
chr2	9545741	9545839	1064391	0	-	0.438776	(0.408,0.44]	chr2	113556	16	INTRON	INTRON	ADAM17	ENSG00000151694.14	ENST00000310823.8:ENST00000648548.1:ENST00000649227.1:ENST00000648857.1:ENST00000647979.1:ENST00000647610.1:ENST00000650116.1:ENST00000647622.1:ENST00000649972.1:ENST00000650241.1:ENST00000618923.2:ENST00000478059.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	36	2	3.08738	3.6591699999999996	4.23096	0.0278028	0.00478231	0.123904	0.0636201
chr8	99044053	99044153	3811566	0	+	0.41	(0.408,0.44]	chr8	353065	51	INTRON	INTRON	VPS13B	ENSG00000132549.20	ENST00000496144.5:ENST00000683334.1:ENST00000682853.1:ENST00000357162.7:ENST00000358544.7:ENST00000683619.1:ENST00000441350.2:ENST00000684269.1:ENST00000682806.1:ENST00000683869.1:ENST00000682153.1:ENST00000682358.1:ENST00000682145.1:ENST00000355155.6:ENST00000682234.1:ENST00000683486.1:ENST00000684308.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	36	2	3.08738	3.6591699999999996	4.23096	0.0278028	0.00478231	0.123904	0.0636201
chr12	22634858	22634957	5094839	0	+	0.262626	[0,0.28]	chr12	481224	88	INTRON	INTRON	ETNK1	ENSG00000139163.16	ENST00000671733.1:ENST00000335148.8:ENST00000672951.1:ENST00000266517.9:ENST00000538218.2:ENST00000673496.1:ENST00000673406.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	176	2	3.23121	3.659085	4.08696	2.58504e-4	1.21807e-4	0.0148796	0.0094315
chr11	71478994	71479082	4822339	0	+	0.431818	(0.408,0.44]	chr11	449773	7	EXON_MRNA	EXON_MRNA:INTRON	NADSYN1	ENSG00000172890.13	ENST00000319023.7:ENST00000525200.5:ENST00000530534.1:ENST00000527852.6:ENST00000529840.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	35	2	2.49258	3.6589400000000003	4.8253	0.0314608	0.0056738	0.144381	0.0653997
chr11	93799097	93799195	4848903	0	+	0.428571	(0.408,0.44]	chr11	452324	10	INTRON	INTRON	MED17	ENSG00000042429.12	ENST00000640583.1:ENST00000640804.1:ENST00000638487.1:ENST00000639596.1:ENST00000251871.9:ENST00000640027.1:ENST00000639189.1:ENST00000525026.6:ENST00000533133.6:ENST00000639724.1:ENST00000639457.1:ENST00000640473.1:ENST00000640451.1:ENST00000507258.4:ENST00000640521.1:ENST00000638518.1:ENST00000638790.1:ENST00000639523.1:ENST00000640077.1:ENST00000529626.2:ENST00000533367.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	35	2	2.49258	3.6589400000000003	4.8253	0.0314608	0.0056738	0.144381	0.0653997
chr7	4713751	4713851	3270230	0	+	0.41	(0.408,0.44]	chr7	303884	305	INTRON	INTRON	FOXK1	ENSG00000164916.11	ENST00000328914.5	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	2.49258	3.6589400000000003	4.8253	0.0314608	0.0056738	0.144381	0.0653997
chrX	123688400	123688499	7878602	0	-	0.424242	(0.408,0.44]	chrX	802557	13	INTRON	INTRON	THOC2	ENSG00000125676.20	ENST00000245838.13:ENST00000355725.8:ENST00000491737.5:ENST00000433883.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	35	2	2.49258	3.6589400000000003	4.8253	0.0314608	0.0056738	0.144381	0.0653997
chrX	134407890	134407990	7723850	0	+	0.44	(0.408,0.44]	chrX	790119	109	INTRON	INTRON	PHF6	ENSG00000156531.18	ENST00000687496.1:ENST00000685553.1:ENST00000625464.2:ENST00000370803.8:ENST00000332070.7:ENST00000370799.5:ENST00000691812.1:ENST00000688598.1:ENST00000693759.1:ENST00000370800.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	35	2	2.49258	3.6589400000000003	4.8253	0.0314608	0.0056738	0.144381	0.0653997
chr2	113198413	113198485	852685	0	+	0.569444	(0.515,0.57]	chr2	95688	1	SS3_PROX	SS3_PROX:INTRON	PSD4	ENSG00000125637.16	ENST00000245796.11:ENST00000418251.6:ENST00000441564.7:ENST00000409656.5:ENST00000409378.1:ENST00000460725.5:ENST00000465592.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	36	2	3.1473	3.658835	4.17037	0.0139194	0.00397184	0.10247	0.0549214
chr16	67884411	67884499	6368836	0	+	0.238636	[0,0.28]	chr16	612019	4	UTR3	UTR3:EXON_MRNA	EDC4	ENSG00000038358.15	ENST00000358933.10:ENST00000572221.5:ENST00000573992.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	59	2	2.3719	3.658755	4.94561	0.0150263	0.0139689	0.10247	0.0994339
chr7	87194489	87194586	3346076	0	+	0.278351	[0,0.28]	chr7	311731	5	EXON_MRNA	EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DMTF1	ENSG00000135164.19	ENST00000413276.6:ENST00000447863.5:ENST00000579677.5:ENST00000425406.5:ENST00000547146.6:ENST00000579850.5:ENST00000331242.12:ENST00000432937.6:ENST00000394703.9:ENST00000412139.6:ENST00000488352.2:ENST00000454008.6:ENST00000582204.1:ENST00000580010.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	58	2	2.10688	3.65871	5.21054	0.0307985	0.00758653	0.143385	0.0749063
chr6	13650871	13650970	3058612	0	-	0.525253	(0.515,0.57]	chr6	284524	58	INTRON	INTRON	RANBP9	ENSG00000010017.13	ENST00000011619.6	protein_coding	protein_coding	protein_coding	protein_coding	3	89	2	2.99316	3.658665	4.32417	9.21623e-4	7.95528e-6	0.0278396	0.0020223
chr6	159765421	159765520	3022726	0	+	0.494949	(0.476,0.515]	chr6	281949	20	INTRON	INTRON	ACAT2	ENSG00000120437.9	ENST00000367048.5:ENST00000467951.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	36	2	2.28264	3.6586499999999997	5.03466	0.0534132	0.00252065	0.179876	0.0446195
chr11	74758669	74758769	4829256	0	+	0.49	(0.476,0.515]	chr11	450625	89	INTRON	INTRON	RNF169	ENSG00000166439.6	ENST00000299563.5	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	2.8863	3.658615	4.43093	0.0111679	0.00931369	0.0877435	0.0855292
chr4	1811674	1811772	2095301	0	-	0.55102	(0.515,0.57]	chr4	207261	3	UTR3	UTR3:EXON_MRNA	LETM1	ENSG00000168924.15	ENST00000302787.3	protein_coding	protein_coding	protein_coding	protein_coding	2	48	2	2.7208	3.65855	4.5963	0.00370287	0.00306828	0.0561162	0.0494933
chr1	17409294	17409383	384671	0	-	0.494382	(0.476,0.515]	chr1	45436	1	SS3_PROX	SS3_PROX:INTRON	RCC2	ENSG00000179051.14	ENST00000375436.9:ENST00000375433.3	protein_coding	protein_coding	protein_coding	protein_coding	5	71	2	1.61324	3.658525	5.70381	0.026684	1.75496e-4	0.134419	0.01216
chr12	112052664	112052762	5414846	0	-	0.387755	(0.378,0.408]	chr12	517165	27	INTRON	INTRON	NAA25	ENSG00000111300.10	ENST00000261745.9:ENST00000552527.5:ENST00000549711.5:ENST00000551858.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	57	2	1.89251	3.658045	5.42358	0.0251428	8.39231e-4	0.133404	0.0266487
chr10	21547334	21547433	4404540	0	+	0.30303	(0.28,0.32]	chr10	406427	56	INTRON	INTRON	MLLT10	ENSG00000078403.17	ENST00000651097.1:ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000377100.8:ENST00000377091.7:ENST00000650772.1:ENST00000651298.1:ENST00000652497.1:ENST00000495130.5:ENST00000377059.7:ENST00000621220.4:ENST00000476557.5:ENST00000462999.5:ENST00000430455.2:ENST00000479634.1:ENST00000480415.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	74	2	1.79739	3.658035	5.51868	0.0224995	0.00162747	0.124921	0.0367966
chr3	72435000	72435100	1745805	0	-	0.32	(0.28,0.32]	chr3	177368	545	INTRON	INTRON	RYBP	ENSG00000163602.12	ENST00000477973.5	protein_coding	protein_coding	protein_coding	protein_coding	4	75	2	1.96841	3.65803	5.34765	0.0124199	0.00287138	0.0973643	0.0474836
chr20	34001716	34001816	7258017	0	+	0.41	(0.408,0.44]	chr20	737318	72	INTRON	INTRON	RALY	ENSG00000125970.12	ENST00000375114.7:ENST00000448364.5:ENST00000413297.5:ENST00000246194.8:ENST00000333552.9	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	2.2957	3.65799	5.02028	0.0516458	0.00303216	0.176696	0.0493883
chr5	145683004	145683104	2745111	0	-	0.42	(0.408,0.44]	chr5	258670	2093	INTRON	INTRON	PRELID2	ENSG00000186314.12	ENST00000510259.5	protein_coding	processed_transcript	protein_coding	processed_transcript	1	36	2	2.2957	3.65799	5.02028	0.0516458	0.00303216	0.176696	0.0493883
chr8	43122877	43122975	3746465	0	+	0.438776	(0.408,0.44]	chr8	348632	1	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	POMK	ENSG00000185900.11	ENST00000676193.1:ENST00000331373.10:ENST00000674937.1:ENST00000614426.2:ENST00000674782.1:ENST00000676178.1:ENST00000674676.1:ENST00000675675.1:ENST00000675322.1:ENST00000674646.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	36	2	2.2957	3.65799	5.02028	0.0516458	0.00303216	0.176696	0.0493883
chr15	30647074	30647167	5992487	0	+	0.44086	(0.44,0.476]	chr15	569751	4	INTRON	INTRON	ARHGAP11B:ENSG00000284906:ENSG00000285035	ENSG00000285077.3:ENSG00000284906.3:ENSG00000285035.2	ENST00000428041.4:ENST00000693711.1:ENST00000685924.1:ENST00000563110.6:ENST00000642399.2:ENST00000566548.5	protein_coding	protein_coding	protein_coding:transcribed_unprocessed_pseudogene	protein_coding:nonsense_mediated_decay:processed_transcript:transcribed_unprocessed_pseudogene	2	50	2	2.19078	3.6579550000000003	5.12513	0.0226089	7.96486e-4	0.117489	0.0258804
chr5	136479760	136479860	2493539	0	+	0.25	[0,0.28]	chr5	238200	125	INTRON	INTRON	ENSG00000249803	ENSG00000249803.6	ENST00000653158.1:ENST00000446720.3:ENST00000665110.1:ENST00000511165.6:ENST00000666378.1:ENST00000657590.1:ENST00000658501.1:ENST00000660537.1:ENST00000659712.1	lncRNA	lncRNA	lncRNA	lncRNA	2	58	2	2.15457	3.657935	5.1613	0.0269306	0.00866441	0.135288	0.0787025
chr7	149599903	149600003	3672375	0	-	0.27	[0,0.28]	chr7	340834	359	INTRON	INTRON	ZNF767P	ENSG00000133624.14	ENST00000463567.5:ENST00000472212.5:ENST00000684939.1:ENST00000690388.1:ENST00000486492.5:ENST00000481762.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	2	58	2	2.15457	3.657935	5.1613	0.0269306	0.00866441	0.135288	0.0787025
chr17	46140228	46140328	6784338	0	-	0.29	(0.28,0.32]	chr17	669216	190	INTRON	INTRON	KANSL1	ENSG00000120071.15	ENST00000574590.6:ENST00000572904.6:ENST00000432791.7:ENST00000575318.6:ENST00000638275.1:ENST00000262419.10:ENST00000648792.1:ENST00000639531.1:ENST00000639150.1:ENST00000639853.1:ENST00000571698.2:ENST00000639375.1:ENST00000638269.1:ENST00000576248.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	74	2	1.64429	3.65793	5.67157	0.0365539	9.48957e-4	0.153932	0.0281755
chr1	35297087	35297187	68572	0	+	0.5	(0.476,0.515]	chr1	8723	7	INTRON	INTRON	ZMYM4	ENSG00000146463.12	ENST00000314607.11:ENST00000441447.1	protein_coding	protein_coding	protein_coding	protein_coding	1	37	2	2.3223	3.6578600000000003	4.99342	0.0519312	0.00139274	0.159306	0.0341261
chr17	39432705	39432800	6766968	0	-	0.484211	(0.476,0.515]	chr17	665566	3	INTRON	INTRON	MED1	ENSG00000125686.12	ENST00000394287.7:ENST00000300651.11:ENST00000577831.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	37	2	2.3223	3.6578600000000003	4.99342	0.0519312	0.00139274	0.159306	0.0341261
chr7	35813362	35813462	3306017	0	+	0.5	(0.476,0.515]	chr7	306967	117	INTRON	INTRON	SEPTIN7	ENSG00000122545.21	ENST00000399034.7:ENST00000435235.6:ENST00000350320.11:ENST00000672279.1:ENST00000634600.1:ENST00000635669.1:ENST00000635175.1:ENST00000475109.5:ENST00000635047.1:ENST00000493626.5:ENST00000473201.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	37	2	2.3223	3.6578600000000003	4.99342	0.0519312	0.00139274	0.159306	0.0341261
chr11	58591170	58591270	4793864	0	+	0.31	(0.28,0.32]	chr11	443838	59	INTRON	INTRON	ZFP91	ENSG00000186660.15	ENST00000316059.7	protein_coding	protein_coding	protein_coding	protein_coding	2	59	2	1.96376	3.657825	5.35189	0.0480066	8.52844e-4	0.153019	0.0264928
chr6	124996374	124996474	2951813	0	+	0.31	(0.28,0.32]	chr6	277679	4	SS3_PROX	SS3_PROX:INTRON	RNF217	ENSG00000146373.17	ENST00000521654.7:ENST00000560949.5:ENST00000519565.5:ENST00000454842.2:ENST00000368414.6:ENST00000519799.5:ENST00000359704.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	59	2	1.96376	3.657825	5.35189	0.0480066	8.52844e-4	0.153019	0.0264928
chr5	144160201	144160298	2742883	0	-	0.329897	(0.32,0.35]	chr5	258626	22	UTR3	UTR3:EXON_MRNA	YIPF5	ENSG00000145817.17	ENST00000274496.10:ENST00000448443.6:ENST00000513112.5	protein_coding	protein_coding	protein_coding	protein_coding	2	51	2	2.35591	3.6578100000000004	4.95971	0.0128129	0.00663522	0.0990564	0.0703181
chr4	455708	455808	2092736	0	-	0.28	[0,0.28]	chr4	206783	109	INTRON	INTRON	ABCA11P:ZNF721	ENSG00000251595.7:ENSG00000182903.16	ENST00000451020.6:ENST00000514396.5:ENST00000507854.1:ENST00000515578.5:ENST00000506646.5:ENST00000507078.1:ENST00000511833.3:ENST00000338977.5:ENST00000505900.1	protein_coding	protein_coding	protein_coding:transcribed_processed_pseudogene	protein_coding:nonsense_mediated_decay:processed_transcript	3	70	2	1.84046	3.6578	5.47514	0.0335889	0.00354561	0.146709	0.0529186
chr4	78843827	78843927	1982064	0	+	0.28	[0,0.28]	chr4	198485	9	INTRON	INTRON	BMP2K	ENSG00000138756.19	ENST00000389010.7:ENST00000502613.3:ENST00000502871.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	70	2	1.84046	3.6578	5.47514	0.0335889	0.00354561	0.146709	0.0529186
chr5	37350765	37350846	2602561	0	-	0.358025	(0.35,0.378]	chr5	247498	1	SS5_PROX	SS5_PROX:INTRON	NUP155	ENSG00000113569.16	ENST00000231498.8:ENST00000381843.6:ENST00000513532.1	protein_coding	protein_coding	protein_coding	protein_coding	2	83	2	3.57944	3.657765	3.73609	0.0010429	3.31057e-4	0.0293983	0.0161599
chr5	95765881	95765979	2431595	0	+	0.591837	(0.57,1]	chr5	233672	19	INTRON	INTRON	RHOBTB3	ENSG00000164292.13	ENST00000379982.8	protein_coding	protein_coding	protein_coding	protein_coding	2	48	2	3.02967	3.6576500000000003	4.28563	0.00471306	5.27255e-6	0.0631419	0.00170345
chr1	100123689	100123789	515774	0	-	0.43	(0.408,0.44]	chr1	60495	4	SS3_PROX	SS3_PROX:INTRON	SASS6	ENSG00000156876.10	ENST00000462159.1:ENST00000287482.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	64	2	1.96973	3.657605	5.34548	0.0108773	9.40657e-4	0.0923273	0.0280776
chr6	97236279	97236379	3164294	0	-	0.36	(0.35,0.378]	chr6	295106	19	INTRON	INTRON	MMS22L	ENSG00000146263.12	ENST00000683635.1:ENST00000275053.8:ENST00000369251.6:ENST00000509383.5:ENST00000510018.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	198	2	2.5938	3.6575699999999998	4.72134	1.2163e-4	3.53804e-6	0.00942499	0.00134404
chr1	112935223	112935323	523934	0	-	0.49	(0.476,0.515]	chr1	61690	48	INTRON	INTRON	SLC16A1	ENSG00000155380.13	ENST00000679803.1:ENST00000369626.8:ENST00000443580.6:ENST00000538576.5:ENST00000429288.2:ENST00000458229.6:ENST00000679846.1:ENST00000478835.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	37	2	2.69967	3.6574299999999997	4.61519	0.0195838	0.00528365	0.109483	0.0656295
chr15	40164352	40164452	6001278	0	+	0.51	(0.476,0.515]	chr15	570573	27	INTRON	INTRON	BUB1B	ENSG00000156970.13	ENST00000560120.5:ENST00000559414.5:ENST00000412359.7:ENST00000558715.5:ENST00000287598.11	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	37	2	2.69967	3.6574299999999997	4.61519	0.0195838	0.00528365	0.109483	0.0656295
chr2	69742974	69743074	803887	0	+	0.5	(0.476,0.515]	chr2	89707	4	INTRON	INTRON	ANXA4	ENSG00000196975.16	ENST00000418066.2:ENST00000477632.5:ENST00000409920.5:ENST00000460439.5:ENST00000460942.5:ENST00000635311.1:ENST00000487351.6:ENST00000394295.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	37	2	2.69967	3.6574299999999997	4.61519	0.0195838	0.00528365	0.109483	0.0656295
chr2	73455558	73455646	809238	0	+	0.488636	(0.476,0.515]	chr2	90566	4	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	ALMS1	ENSG00000116127.20	ENST00000484298.5:ENST00000613296.6:ENST00000614410.4:ENST00000682801.1:ENST00000682859.1:ENST00000682565.1:ENST00000684548.1:ENST00000683791.1:ENST00000684460.1:ENST00000684656.1:ENST00000684197.1:ENST00000423048.5:ENST00000684590.1:ENST00000620466.4:ENST00000651434.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	37	2	2.69967	3.6574299999999997	4.61519	0.0195838	0.00528365	0.109483	0.0656295
chr7	127811967	127812067	3404010	0	+	0.38	(0.378,0.408]	chr7	318140	40	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000468166.5:ENST00000465900.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	131	2	2.51043	3.6573649999999995	4.8043	0.00304007	5.39334e-7	0.0493883	3.95293e-4
chr10	42361832	42361931	4603394	0	-	0.484848	(0.476,0.515]	chr10	424089	4	INTRON	INTRON	ENSG00000215146	ENSG00000215146.5	ENST00000609841.1:ENST00000650175.1:ENST00000609034.1:ENST00000609502.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	4	64	2	1.95469	3.6573200000000003	5.35995	0.0115753	7.54256e-4	0.0962115	0.0251179
chr7	127728798	127728898	3403178	0	+	0.5	(0.476,0.515]	chr7	318134	70	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000468166.5:ENST00000465900.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	56	2	2.16306	3.6572450000000005	5.15143	0.00973468	0.00166579	0.0877284	0.0369207
chr14	49805424	49805520	5886768	0	-	0.416667	(0.408,0.44]	chr14	558700	18	INTRON	INTRON	NEMF	ENSG00000165525.18	ENST00000298310.10:ENST00000556925.5:ENST00000555970.5:ENST00000555411.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	56	2	1.8749	3.65715	5.4394	0.0264246	6.50925e-4	0.133676	0.0232863
chr21	17607380	17607479	7433034	0	-	0.252525	[0,0.28]	chr21	758033	20	INTRON	INTRON	BTG3	ENSG00000154640.15	ENST00000348354.7:ENST00000339775.10	protein_coding	protein_coding	protein_coding	protein_coding	2	69	2	2.39991	3.657025	4.91414	0.0163416	0.0064519	0.101571	0.0730725
chr1	51551681	51551781	98886	0	+	0.48	(0.476,0.515]	chr1	13212	328	INTRON	INTRON	EPS15-AS1	ENSG00000227070.1	ENST00000415031.1:ENST00000426017.1	lncRNA	lncRNA	lncRNA	lncRNA	3	56	2	1.86014	3.65702	5.4539	0.0277606	5.16081e-4	0.137011	0.0208667
chr6	122547268	122547368	2948424	0	+	0.43	(0.408,0.44]	chr6	277524	539	INTRON	INTRON	PKIB	ENSG00000135549.16	ENST00000615438.4:ENST00000392491.6:ENST00000608895.5:ENST00000618977.4:ENST00000583007.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	51	2	2.31565	3.6570100000000005	4.99837	0.0154718	0.00131369	0.100909	0.0333932
chr7	128991798	128991898	3635942	0	-	0.43	(0.408,0.44]	chr7	338089	4	SS5_PROX	SS5_PROX:INTRON	TNPO3	ENSG00000064419.14	ENST00000627585.2:ENST00000265388.10:ENST00000471234.5:ENST00000482320.5:ENST00000471166.1	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	2.18807	3.6568750000000003	5.12568	0.0708044	7.90919e-4	0.184528	0.0258324
chr7	156882271	156882371	3687909	0	-	0.47	(0.44,0.476]	chr7	342096	450	INTRON	INTRON	LMBR1	ENSG00000105983.23	ENST00000353442.10:ENST00000415428.5:ENST00000454132.5:ENST00000434503.5:ENST00000430278.5:ENST00000434278.5:ENST00000444719.5:ENST00000461469.5:ENST00000414218.1:ENST00000434453.1:ENST00000498034.5:ENST00000433968.5:ENST00000485985.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	122	2	3.22811	3.656775	4.08544	7.98065e-5	5.22147e-5	0.00801397	0.00590253
chrX	44926084	44926184	7649131	0	+	0.56	(0.515,0.57]	chrX	782726	517	INTRON	INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000675440.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000621147.5:ENST00000475233.1:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	51	2	1.88259	3.65639	5.43019	0.0251849	2.60422e-4	0.133519	0.0148796
chr18	36138497	36138569	6891507	0	+	0.194444	[0,0.28]	chr18	682975	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ELP2	ENSG00000134759.14	ENST00000543127.5:ENST00000544267.5:ENST00000351393.10:ENST00000545632.5:ENST00000442325.6:ENST00000358232.11:ENST00000423854.6:ENST00000539560.5:ENST00000535488.5:ENST00000540135.5:ENST00000542430.5:ENST00000350494.10:ENST00000542824.5:ENST00000540799.1:ENST00000543439.5:ENST00000540730.5:ENST00000540323.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	43	2	2.69187	3.6563550000000005	4.62084	0.0313633	0.0221271	0.13151	0.123903
chr2	15535041	15535141	1072899	0	-	0.24	[0,0.28]	chr2	114446	4	SS3_PROX	SS3_PROX:INTRON	NBAS	ENSG00000151779.13	ENST00000281513.10	protein_coding	protein_coding	protein_coding	protein_coding	1	43	2	2.69187	3.6563550000000005	4.62084	0.0313633	0.0221271	0.13151	0.123903
chr4	39871320	39871417	2131113	0	-	0.278351	[0,0.28]	chr4	210128	15	INTRON	INTRON	PDS5A	ENSG00000121892.15	ENST00000303538.13:ENST00000507020.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	43	2	2.69187	3.6563550000000005	4.62084	0.0313633	0.0221271	0.13151	0.123903
chr19	3623187	3623287	7118300	0	-	0.59	(0.57,1]	chr19	715875	1	SS5_PROX	SS5_PROX:INTRON	CACTIN	ENSG00000105298.14	ENST00000429344.7:ENST00000585942.5:ENST00000248420.9:ENST00000221899.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	33	2	2.86892	3.6562900000000003	4.44366	0.00210922	0.00125753	0.0425419	0.0323608
chr15	44502248	44502348	6015106	0	+	0.26	[0,0.28]	chr15	572968	2	SS5_PROX	SS5_PROX:INTRON	CTDSPL2	ENSG00000137770.14	ENST00000260327.9:ENST00000558966.5:ENST00000558373.5:ENST00000561189.1:ENST00000560620.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	60	2	2.48813	3.65623	4.82433	0.0200334	0.00953591	0.109608	0.0863913
chr12	111462394	111462492	5411831	0	-	0.316327	(0.28,0.32]	chr12	516815	7	INTRON	INTRON	ATXN2	ENSG00000204842.18	ENST00000642389.2:ENST00000608853.5:ENST00000672613.1:ENST00000673436.1:ENST00000643669.2:ENST00000389154.7:ENST00000616825.4:ENST00000389153.10:ENST00000550104.5:ENST00000483311.6:ENST00000672335.1:ENST00000647445.1:ENST00000482777.5:ENST00000492467.6:ENST00000673557.1:ENST00000673283.1:ENST00000673273.1:ENST00000673449.1:ENST00000535949.5:ENST00000542287.6:ENST00000550844.2:ENST00000643474.1:ENST00000643694.1:ENST00000550889.5:ENST00000645162.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	54	2	1.96475	3.6562	5.34765	0.0428385	0.00287138	0.162255	0.0474836
chr15	83578632	83578731	6083303	0	+	0.282828	(0.28,0.32]	chr15	579081	15	INTRON	INTRON	SH3GL3	ENSG00000140600.17	ENST00000427482.7:ENST00000563901.5:ENST00000324537.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	54	2	1.96475	3.6562	5.34765	0.0428385	0.00287138	0.162255	0.0474836
chr17	30766988	30767088	6590160	0	+	0.29	(0.28,0.32]	chr17	640875	4	SS5_PROX	SS5_PROX:INTRON	SUZ12P1	ENSG00000264538.7	ENST00000578070.5:ENST00000579526.5:ENST00000690405.1:ENST00000578195.6:ENST00000582557.5:ENST00000582329.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	3	65	2	2.1076	3.6561000000000003	5.2046	0.0133585	0.00448664	0.100772	0.0593175
chr4	55416571	55416657	1960801	0	+	0.313953	(0.28,0.32]	chr4	196565	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TMEM165	ENSG00000134851.13	ENST00000381334.10:ENST00000506198.5:ENST00000508404.5:ENST00000511710.1:ENST00000514904.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	65	2	2.1076	3.6561000000000003	5.2046	0.0133585	0.00448664	0.100772	0.0593175
chr10	50517830	50517930	4619628	0	-	0.35	(0.32,0.35]	chr10	425446	505	INTRON	INTRON	SGMS1	ENSG00000198964.14	ENST00000429490.5:ENST00000361781.7:ENST00000619438.4:ENST00000609445.5:ENST00000608287.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	41	2	2.37794	3.6560949999999997	4.93425	0.0498601	0.00281048	0.156383	0.0488779
chr15	57043260	57043360	6033359	0	+	0.34	(0.32,0.35]	chr15	574669	415	INTRON	INTRON	TCF12	ENSG00000140262.18	ENST00000438423.6:ENST00000267811.9:ENST00000333725.10:ENST00000560190.5:ENST00000559609.5:ENST00000558908.5:ENST00000557843.5:ENST00000557947.5:ENST00000561152.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	41	2	2.37794	3.6560949999999997	4.93425	0.0498601	0.00281048	0.156383	0.0488779
chr3	121475941	121476039	1797739	0	-	0.285714	(0.28,0.32]	chr3	180470	21	INTRON	INTRON	POLQ	ENSG00000051341.15	ENST00000264233.6:ENST00000474243.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	44	2	2.62686	3.656065	4.68527	0.0289217	0.00819419	0.1274	0.0810802
chr1	93873627	93873714	512387	0	-	0.425287	(0.408,0.44]	chr1	60187	4	SS3_PROX	SS3_PROX:INTRON	DNTTIP2	ENSG00000067334.14	ENST00000436063.7:ENST00000359208.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	38	2	2.78122	3.6560499999999996	4.53088	0.015812	0.00669275	0.101453	0.0738715
chr3	125580440	125580540	1808392	0	-	0.42	(0.408,0.44]	chr3	181628	4	SS3_PROX	SS3_PROX:INTRON	OSBPL11	ENSG00000144909.8	ENST00000296220.6	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	2.78122	3.6560499999999996	4.53088	0.015812	0.00669275	0.101453	0.0738715
chr5	32296470	32296570	2598235	0	-	0.42	(0.408,0.44]	chr5	246854	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	MTMR12	ENSG00000150712.11	ENST00000280285.9:ENST00000382142.8:ENST00000264934.5:ENST00000505419.5:ENST00000513622.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	38	2	2.78122	3.6560499999999996	4.53088	0.015812	0.00669275	0.101453	0.0738715
chr15	52055433	52055533	6029387	0	+	0.36	(0.35,0.378]	chr15	574447	49	INTRON	INTRON	MAPK6	ENSG00000069956.14	ENST00000691380.1:ENST00000681888.1:ENST00000261845.7:ENST00000680066.1:ENST00000680777.1:ENST00000680652.1	protein_coding	protein_coding	protein_coding	protein_coding	4	67	2	1.77736	3.6560349999999997	5.53471	0.0225073	6.96925e-4	0.124921	0.024224
chr16	30581511	30581607	6473880	0	-	0.322917	(0.32,0.35]	chr16	625854	10	UTR3	UTR3:EXON_MRNA:INTRON	ZNF785	ENSG00000197162.10	ENST00000562128.1:ENST00000470110.2:ENST00000395216.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	41	2	2.4458	3.65601	4.86622	0.0425977	0.00354075	0.148082	0.0546236
chr3	183726708	183726807	1580583	0	+	0.323232	(0.32,0.35]	chr3	163050	18	INTRON	INTRON	YEATS2	ENSG00000163872.16	ENST00000305135.10	protein_coding	protein_coding	protein_coding	protein_coding	1	41	2	2.4458	3.65601	4.86622	0.0425977	0.00354075	0.148082	0.0546236
chr7	111483531	111483629	3623322	0	-	0.336735	(0.32,0.35]	chr7	337109	2	EXON_LNCRNA	EXON_LNCRNA:INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000452895.5:ENST00000447215.5:ENST00000492938.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	41	2	2.4458	3.65601	4.86622	0.0425977	0.00354075	0.148082	0.0546236
chr1	35827734	35827833	70184	0	+	0.242424	[0,0.28]	chr1	8964	5	INTRON	INTRON	AGO4	ENSG00000134698.11	ENST00000373210.4	protein_coding	protein_coding	protein_coding	protein_coding	1	43	2	2.36637	3.65599	4.94561	0.0500615	0.0150263	0.17488	0.0994339
chr10	21661851	21661951	4405699	0	+	0.2	[0,0.28]	chr10	406493	97	INTRON	INTRON	MLLT10	ENSG00000078403.17	ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000651298.1:ENST00000377059.7:ENST00000652258.1:ENST00000651382.1:ENST00000438473.6:ENST00000650921.1:ENST00000651405.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	43	2	2.36637	3.65599	4.94561	0.0500615	0.0150263	0.17488	0.0994339
chr7	152843256	152843355	3451364	0	+	0.242424	[0,0.28]	chr7	322567	178	INTRON	INTRON	ACTR3B	ENSG00000133627.18	ENST00000377776.7:ENST00000256001.13:ENST00000397282.2:ENST00000479402.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	43	2	2.36637	3.65599	4.94561	0.0500615	0.0150263	0.17488	0.0994339
chr12	98531179	98531279	5198778	0	+	0.45	(0.44,0.476]	chr12	491803	1	SS3_PROX	SS3_PROX:INTRON	TMPO	ENSG00000120802.14	ENST00000556029.6:ENST00000343315.9:ENST00000266732.8:ENST00000393053.6:ENST00000546828.6:ENST00000261210.9:ENST00000549938.5:ENST00000552831.1:ENST00000547214.1:ENST00000556678.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	37	2	2.38219	3.6559350000000004	4.92968	0.045456	0.00171443	0.149888	0.0381936
chr4	23088042	23088140	1929007	0	+	0.469388	(0.44,0.476]	chr4	193963	39	INTRON	INTRON	ENSG00000248837	ENSG00000248837.7	ENST00000659942.1:ENST00000655325.1:ENST00000652324.1:ENST00000653008.1:ENST00000666412.1:ENST00000667179.1:ENST00000661585.1:ENST00000653872.1:ENST00000660370.1:ENST00000667156.1:ENST00000658109.1:ENST00000653188.1:ENST00000666579.1:ENST00000663348.1	lncRNA	lncRNA	lncRNA	lncRNA	1	37	2	2.38219	3.6559350000000004	4.92968	0.045456	0.00171443	0.149888	0.0381936
chr20	38071715	38071815	7269265	0	+	0.36	(0.35,0.378]	chr20	738717	12	INTRON	INTRON	RPRD1B	ENSG00000101413.12	ENST00000462548.6:ENST00000373433.9:ENST00000449186.2:ENST00000618318.1:ENST00000614670.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	40	2	2.1617	3.6559299999999997	5.15016	0.0771502	9.78549e-4	0.196285	0.0287765
chr3	197650135	197650227	1904054	0	-	0.478261	(0.476,0.515]	chr3	190775	10	EXON_LNCRNA	EXON_LNCRNA	ENSG00000286909	ENSG00000286909.1	ENST00000667447.1	lncRNA	lncRNA	lncRNA	lncRNA	2	76	2	3.60627	3.6559	3.70553	7.49088e-4	3.44823e-4	0.0251179	0.0165103
chr7	16266411	16266511	3286451	0	+	0.33	(0.32,0.35]	chr7	305229	1	SS5_PROX	SS5_PROX:INTRON	CRPPA-AS1	ENSG00000229688.8	ENST00000663812.1:ENST00000438573.5:ENST00000655000.1:ENST00000457112.1	lncRNA	lncRNA	lncRNA	lncRNA	2	91	2	3.45772	3.65588	3.85404	0.00128487	3.75908e-4	0.0333518	0.0179813
chr5	88218364	88218464	2669230	0	-	0.39	(0.378,0.408]	chr5	252658	108	INTRON	INTRON	TMEM161B	ENSG00000164180.14	ENST00000514135.5:ENST00000296595.11:ENST00000511087.5:ENST00000510089.5:ENST00000506536.5:ENST00000511218.5:ENST00000512429.5:ENST00000507872.1:ENST00000509387.5:ENST00000503755.5:ENST00000513487.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	80	2	3.60429	3.65579	3.70729	5.71664e-4	5.5156e-4	0.0217398	0.0216014
chr13	59966045	59966145	5602375	0	-	0.3	(0.28,0.32]	chr13	535449	408	INTRON	INTRON	DIAPH3	ENSG00000139734.19	ENST00000400324.9:ENST00000377908.6:ENST00000400319.5:ENST00000400320.5:ENST00000267215.8:ENST00000465066.5:ENST00000498416.2	protein_coding	protein_coding	protein_coding	protein_coding	1	40	2	2.80157	3.65569	4.50981	0.0275554	0.0147132	0.123904	0.106558
chr19	56314345	56314442	7215549	0	-	0.453608	(0.44,0.476]	chr19	733000	2	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	ZSCAN5A	ENSG00000131848.10	ENST00000683990.1:ENST00000587340.5:ENST00000587492.5:ENST00000593106.5:ENST00000592509.5:ENST00000588955.5:ENST00000588442.5:ENST00000592679.5:ENST00000591078.5:ENST00000589279.5:ENST00000585670.5:ENST00000587614.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	37	2	2.60774	3.655645	4.70355	0.0255874	0.00383786	0.120269	0.0562562
chr7	135470498	135470598	3648565	0	-	0.45	(0.44,0.476]	chr7	339187	317	INTRON	INTRON	CNOT4	ENSG00000080802.20	ENST00000541284.6:ENST00000451834.5:ENST00000423368.6:ENST00000361528.8:ENST00000428680.6:ENST00000315544.6:ENST00000491203.5:ENST00000498534.5:ENST00000465721.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	37	2	2.60774	3.655645	4.70355	0.0255874	0.00383786	0.120269	0.0562562
chrX	24849568	24849667	7633288	0	+	0.454545	(0.44,0.476]	chrX	781789	55	INTRON	INTRON	POLA1	ENSG00000101868.13	ENST00000672178.1:ENST00000379068.8:ENST00000379059.7:ENST00000611764.2:ENST00000679301.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	37	2	2.60774	3.655645	4.70355	0.0255874	0.00383786	0.120269	0.0562562
chrX	71448990	71449089	7679083	0	+	0.474747	(0.44,0.476]	chrX	786299	69	INTRON	INTRON	TAF1	ENSG00000147133.17	ENST00000683202.1:ENST00000373790.9:ENST00000423759.6:ENST00000683782.1:ENST00000683668.1:ENST00000276072.9:ENST00000373775.8:ENST00000485087.6:ENST00000437147.8:ENST00000683358.1:ENST00000682124.1:ENST00000461764.6:ENST00000492404.6:ENST00000462588.5:ENST00000468167.6:ENST00000683954.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	37	2	2.60774	3.655645	4.70355	0.0255874	0.00383786	0.120269	0.0562562
chr1	55115022	55115122	464849	0	-	0.31	(0.28,0.32]	chr1	56085	44	INTRON	INTRON	USP24	ENSG00000162402.14	ENST00000294383.7	protein_coding	protein_coding	protein_coding	protein_coding	4	82	2	1.57779	3.6556200000000003	5.73345	0.0502605	1.71668e-4	0.156383	0.0113605
chr8	11807059	11807157	3702565	0	+	0.397959	(0.378,0.408]	chr8	343487	32	INTRON	INTRON	FDFT1	ENSG00000079459.13	ENST00000538689.4:ENST00000615631.4:ENST00000618539.4:ENST00000530337.5:ENST00000623368.3:ENST00000446331.6:ENST00000443614.6:ENST00000220584.9:ENST00000525607.5:ENST00000525283.5:ENST00000529464.5:ENST00000525900.5:ENST00000528812.5:ENST00000622850.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	67	2	2.18994	3.65561	5.12128	0.00448961	0.00251746	0.0612035	0.0446195
chrX	154790392	154790482	7915453	0	-	0.577778	(0.57,1]	chrX	806152	4	SS3_PROX	SS3_PROX:INTRON	MPP1	ENSG00000130830.15	ENST00000369534.8:ENST00000413259.7:ENST00000439370.5:ENST00000393531.5:ENST00000453245.5:ENST00000494170.1:ENST00000462825.5:ENST00000393529.5:ENST00000475943.5:ENST00000428488.1:ENST00000488754.5:ENST00000417435.5:ENST00000488694.1:ENST00000369531.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	24	2	2.53383	3.655565	4.7773	0.02547	5.07088e-4	0.12011	0.0202328
chr3	167695922	167696022	1853652	0	-	0.25	[0,0.28]	chr3	186291	2	SS3_PROX	SS3_PROX:INTRON	PDCD10	ENSG00000114209.15	ENST00000392750.7:ENST00000473645.6:ENST00000497056.6:ENST00000492396.5:ENST00000461494.5:ENST00000470131.5:ENST00000475915.6:ENST00000487947.6:ENST00000471885.5:ENST00000479121.5:ENST00000462725.6:ENST00000492139.5:ENST00000483451.5:ENST00000494502.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	58	2	2.20073	3.65553	5.11033	0.0235708	0.00991388	0.128907	0.0838372
chr7	1569692	1569780	3462723	0	-	0.534091	(0.515,0.57]	chr7	323952	5	UTR5	UTR5:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PSMG3	ENSG00000157778.9	ENST00000288607.3:ENST00000404674.7:ENST00000252329.3	protein_coding	protein_coding	protein_coding	protein_coding	11	270	2	3.10124	3.6555	4.20976	2.3374e-6	2.89049e-8	0.00106646	6.5861e-5
chr1	211971489	211971588	631733	0	-	0.272727	[0,0.28]	chr1	74710	24	INTRON	INTRON	INTS7	ENSG00000143493.13	ENST00000469606.5:ENST00000366994.8:ENST00000366993.7:ENST00000366992.7:ENST00000440600.6:ENST00000475798.5:ENST00000461212.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	70	2	1.75741	3.655485	5.55356	0.0424454	0.00278704	0.161763	0.0469265
chr22	19355459	19355559	7553641	0	-	0.47	(0.44,0.476]	chr22	772201	3	SS5_PROX	SS5_PROX:INTRON	HIRA:C22orf39	ENSG00000100084.14:ENSG00000242259.9	ENST00000263208.5:ENST00000340170.8:ENST00000509549.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	143	2	2.89142	3.655485	4.41955	1.92791e-4	6.27516e-6	0.0127226	0.00175994
chr1	77972805	77972905	494469	0	-	0.28	[0,0.28]	chr1	58567	24	INTRON	INTRON	FUBP1	ENSG00000162613.17	ENST00000370768.7:ENST00000294623.8:ENST00000370767.5:ENST00000421641.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	58	2	2.00649	3.6553649999999998	5.30424	0.040391	0.00584781	0.161534	0.0667594
chr16	18098085	18098185	6453614	0	-	0.37	(0.35,0.378]	chr16	621960	943	INTRON	INTRON	ENSG00000259929:ENSG00000260242	ENSG00000259929.5:ENSG00000260242.1	ENST00000567304.1:ENST00000563866.1	lncRNA	lncRNA	lncRNA	lncRNA	1	40	2	2.72497	3.65517	4.58537	0.0198266	0.00703328	0.109608	0.0754576
chr14	101870147	101870247	5819597	0	+	0.32	(0.28,0.32]	chr14	551879	129	INTRON	INTRON	PPP2R5C	ENSG00000078304.20	ENST00000694906.1:ENST00000422945.6:ENST00000328724.9:ENST00000350249.7:ENST00000557621.5:ENST00000556307.5:ENST00000553730.5:ENST00000334743.9:ENST00000445439.7:ENST00000557095.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	40	2	2.38101	3.65515	4.92929	0.0456017	0.0098607	0.164236	0.0838128
chr16	31909663	31909762	6342167	0	+	0.30303	(0.28,0.32]	chr16	608570	191	INTRON	INTRON	ZNF267	ENSG00000185947.15	ENST00000300870.15:ENST00000394846.7:ENST00000566541.5:ENST00000561814.1:ENST00000562971.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	40	2	2.38101	3.65515	4.92929	0.0456017	0.0098607	0.164236	0.0838128
chr7	98172273	98172373	3358266	0	+	0.46	(0.44,0.476]	chr7	313269	2	INTRON	INTRON	LMTK2	ENSG00000164715.6	ENST00000297293.6	protein_coding	protein_coding	protein_coding	protein_coding	2	47	2	2.54944	3.6550599999999998	4.76068	0.00653414	0.00591346	0.0699952	0.0694038
chr1	85257871	85257971	497319	0	-	0.44	(0.408,0.44]	chr1	58952	4	SS3_PROX	SS3_PROX:INTRON	C1orf52	ENSG00000162642.14	ENST00000294661.8:ENST00000471115.6:ENST00000344356.5:ENST00000493514.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	273	2	3.31584	3.655015	3.99419	1.32246e-6	8.72094e-7	6.75847e-4	5.74603e-4
chr12	104301777	104301877	5210158	0	+	0.38	(0.378,0.408]	chr12	493210	103	INTRON	INTRON	TXNRD1	ENSG00000198431.17	ENST00000525566.6:ENST00000526266.5:ENST00000503506.6:ENST00000526691.5:ENST00000531691.5:ENST00000526390.5:ENST00000531689.5:ENST00000529546.5:ENST00000529751.1:ENST00000528079.6:ENST00000526580.5:ENST00000529784.5:ENST00000524698.5:ENST00000527688.5:ENST00000527335.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	38	2	2.46373	3.655	4.84627	0.0382831	0.00254319	0.141795	0.0465056
chr18	47929751	47929851	6968713	0	-	0.38	(0.378,0.408]	chr18	689727	1	SS5_PROX	SS5_PROX:INTRON	SMAD2	ENSG00000175387.16	ENST00000262160.11:ENST00000402690.6:ENST00000356825.8:ENST00000591214.5:ENST00000587269.5:ENST00000586514.5:ENST00000587421.5:ENST00000589877.5	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	2.46373	3.655	4.84627	0.0382831	0.00254319	0.141795	0.0465056
chr2	61368425	61368525	1129520	0	-	0.38	(0.378,0.408]	chr2	121448	174	INTRON	INTRON	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000453133.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	38	2	2.46373	3.655	4.84627	0.0382831	0.00254319	0.141795	0.0465056
chr3	143042122	143042221	1529513	0	+	0.383838	(0.378,0.408]	chr3	159453	28	INTRON	INTRON	U2SURP	ENSG00000163714.18	ENST00000488497.7:ENST00000473835.7:ENST00000493598.6:ENST00000463563.6:ENST00000480029.5:ENST00000467348.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	39	2	2.13703	3.65492	5.17281	0.0797592	7.27294e-4	0.19979	0.0245647
chr4	1938250	1938350	1911252	0	+	0.39	(0.378,0.408]	chr4	191778	4	SS3_PROX	SS3_PROX:INTRON	NSD2	ENSG00000109685.19	ENST00000508803.6:ENST00000514045.5:ENST00000398261.6:ENST00000382891.9:ENST00000353275.9:ENST00000382892.6:ENST00000382895.7:ENST00000312087.10:ENST00000420906.6:ENST00000503128.5:ENST00000677559.1:ENST00000512700.2:ENST00000678714.1:ENST00000511904.1:ENST00000513726.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	39	2	2.13703	3.65492	5.17281	0.0797592	7.27294e-4	0.19979	0.0245647
chr8	54098227	54098326	3953842	0	-	0.393939	(0.378,0.408]	chr8	362624	321	INTRON	INTRON	LYPLA1	ENSG00000120992.18	ENST00000316963.8:ENST00000618914.4:ENST00000618741.1:ENST00000343231.10:ENST00000519272.5:ENST00000518546.5:ENST00000522007.5:ENST00000519891.5:ENST00000521352.5:ENST00000521898.5:ENST00000519926.5:ENST00000517297.5:ENST00000520896.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	39	2	2.13703	3.65492	5.17281	0.0797592	7.27294e-4	0.19979	0.0245647
chr22	21590361	21590461	7481931	0	+	0.5	(0.476,0.515]	chr22	763232	216	INTRON	INTRON	UBE2L3	ENSG00000185651.16	ENST00000458578.6:ENST00000545681.2:ENST00000696046.1:ENST00000342192.9:ENST00000496722.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	51	2	2.45598	3.654885	4.85379	0.00945755	0.00234214	0.0817766	0.0442989
chr7	65939980	65940080	3323545	0	+	0.36	(0.35,0.378]	chr7	309012	661	INTRON	INTRON	VKORC1L1	ENSG00000196715.7	ENST00000360768.5:ENST00000648187.1:ENST00000648179.1:ENST00000434382.2	protein_coding	protein_coding	protein_coding	protein_coding	4	67	2	1.7339	3.65477	5.57564	0.0260366	5.93654e-4	0.133676	0.0225024
chr5	149741620	149741719	2517165	0	+	0.494949	(0.476,0.515]	chr5	240647	11	INTRON	INTRON	PPARGC1B	ENSG00000155846.17	ENST00000360453.8:ENST00000394320.7:ENST00000461780.1:ENST00000309241.10	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	60	2	1.63838	3.65476	5.67114	0.0555021	6.83906e-5	0.165463	0.00684369
chr8	29060787	29060886	3726581	0	+	0.40404	(0.378,0.408]	chr8	346339	35	INTRON	INTRON	HMBOX1	ENSG00000147421.18	ENST00000522468.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	3	106	2	3.2479	3.6546149999999997	4.06133	2.54231e-4	1.0488e-4	0.0142045	0.00920724
chr7	127853719	127853819	3404429	0	+	0.34	(0.32,0.35]	chr7	318146	89	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000468166.5:ENST00000465900.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	52	2	2.54408	3.654545	4.76501	0.0114287	0.00659077	0.0886611	0.0737338
chr1	163334861	163334960	239663	0	+	0.373737	(0.35,0.378]	chr1	28870	56	INTRON	INTRON	NUF2	ENSG00000143228.13	ENST00000534289.5:ENST00000450453.6:ENST00000524800.5:ENST00000367900.7:ENST00000442820.5:ENST00000271452.8:ENST00000490881.5:ENST00000497990.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	86	2	3.08431	3.654495	4.22468	0.0065853	2.51082e-5	0.0701901	0.00392664
chr2	61321113	61321212	1129032	0	-	0.454545	(0.44,0.476]	chr2	121386	14	INTRON	INTRON	USP34	ENSG00000115464.15	ENST00000398571.7	protein_coding	protein_coding	protein_coding	protein_coding	2	47	2	2.00609	3.654495	5.3029	0.0360127	0.00102616	0.152355	0.029231300000000002
chr17	75832108	75832204	6838558	0	-	0.4375	(0.408,0.44]	chr17	675928	9	EXON_MRNA	EXON_MRNA:INTRON	UNC13D	ENSG00000092929.12	ENST00000207549.9:ENST00000412096.6:ENST00000586930.1:ENST00000591563.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	52	2	2.45003	3.654375	4.85872	0.00990006	0.00221911	0.0838372	0.0435144
chr6	34239357	34239457	2848130	0	+	0.42	(0.408,0.44]	chr6	269048	4	SS5_PROX	SS5_PROX:INTRON	HMGA1	ENSG00000137309.20	ENST00000347617.10:ENST00000401473.7:ENST00000311487.9:ENST00000447654.5:ENST00000674029.1:ENST00000478214.1:ENST00000374116.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	52	2	2.45003	3.654375	4.85872	0.00990006	0.00221911	0.0838372	0.0435144
chr16	11710336	11710436	6444870	0	-	0.39	(0.378,0.408]	chr16	620808	62	INTRON	INTRON	TXNDC11	ENSG00000153066.13	ENST00000283033.10:ENST00000356957.7:ENST00000575591.1:ENST00000576969.5:ENST00000571882.1:ENST00000573174.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	36	2	2.9917	3.6543449999999997	4.31699	0.0250408	0.0068789	0.12011	0.0749442
chr17	76200246	76200346	6841292	0	-	0.39	(0.378,0.408]	chr17	676689	261	INTRON	INTRON	RNF157	ENSG00000141576.16	ENST00000647930.1:ENST00000269391.11:ENST00000319945.10	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	2.9917	3.6543449999999997	4.31699	0.0250408	0.0068789	0.12011	0.0749442
chr2	169612214	169612313	906757	0	+	0.383838	(0.378,0.408]	chr2	100050	11	INTRON	INTRON	PPIG	ENSG00000138398.17	ENST00000678088.1:ENST00000677392.1:ENST00000433207.6:ENST00000679324.1:ENST00000414307.6:ENST00000676508.1:ENST00000260970.8:ENST00000678695.1:ENST00000409714.7:ENST00000530152.5:ENST00000677750.1:ENST00000678721.1:ENST00000462903.6:ENST00000676756.1:ENST00000679107.1:ENST00000678499.1:ENST00000678638.1:ENST00000448752.7:ENST00000417938.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	36	2	2.9917	3.6543449999999997	4.31699	0.0250408	0.0068789	0.12011	0.0749442
chr19	12550909	12550990	7139954	0	-	0.567901	(0.515,0.57]	chr19	720346	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ZNF564	ENSG00000249709.8	ENST00000339282.12:ENST00000427105.1:ENST00000596193.1:ENST00000416136.1:ENST00000465410.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	120	2	3.01932	3.65428	4.28924	4.42021e-5	1.58313e-5	0.0053901	0.00318411
chrX	71380686	71380779	7678356	0	+	0.462366	(0.44,0.476]	chrX	786164	4	INTRON	INTRON	TAF1	ENSG00000147133.17	ENST00000683202.1:ENST00000373790.9:ENST00000423759.6:ENST00000683782.1:ENST00000683715.1:ENST00000683668.1:ENST00000276072.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	136	2	3.54173	3.65421	3.76669	7.87235e-5	1.20182e-5	0.00795151	0.00257265
chr13	83027024	83027124	5633517	0	-	0.33	(0.32,0.35]	chr13	536804	2481	INTRON	INTRON	ENSG00000286385	ENSG00000286385.1	ENST00000663739.1	lncRNA	lncRNA	lncRNA	lncRNA	3	70	2	2.1298	3.6540099999999995	5.17822	0.0141189	0.00115625	0.0959618	0.0313436
chr15	95164873	95164972	6108296	0	+	0.444444	(0.44,0.476]	chr15	581758	41	INTRON	INTRON	ENSG00000277654	ENSG00000277654.6	ENST00000612877.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	1	39	2	2.97451	3.6539849999999996	4.33346	0.0120349	0.00853825	0.0962115	0.0780043
chr6	131642729	131642829	2960238	0	+	0.45	(0.44,0.476]	chr6	278276	8	INTRON	INTRON	ENPP3	ENSG00000154269.15	ENST00000427707.5:ENST00000414305.5:ENST00000357639.8:ENST00000358229.6:ENST00000423831.5:ENST00000470930.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	39	2	2.97451	3.6539849999999996	4.33346	0.0120349	0.00853825	0.0962115	0.0780043
chr7	153404026	153404122	3682118	0	-	0.46875	(0.44,0.476]	chr7	341727	5	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	LINC01287	ENSG00000234722.5	ENST00000647863.1:ENST00000453187.2:ENST00000664249.1:ENST00000663745.1:ENST00000659532.1:ENST00000670362.1:ENST00000669043.1:ENST00000662626.1:ENST00000669109.1:ENST00000657245.1:ENST00000662979.1:ENST00000666243.1:ENST00000670171.1:ENST00000662256.1:ENST00000661522.1:ENST00000660414.1:ENST00000669159.1:ENST00000658753.1:ENST00000671302.1:ENST00000668024.1:ENST00000669370.1:ENST00000667969.1:ENST00000655449.1:ENST00000669818.1:ENST00000454441.2:ENST00000663904.1:ENST00000661082.1:ENST00000653989.1:ENST00000669107.1:ENST00000665909.1:ENST00000665005.1:ENST00000658825.1:ENST00000669410.1:ENST00000664034.1:ENST00000670343.1:ENST00000665256.1	lncRNA	lncRNA	lncRNA	lncRNA	1	39	2	2.97451	3.6539849999999996	4.33346	0.0120349	0.00853825	0.0962115	0.0780043
chr1	202523669	202523769	294541	0	+	0.38	(0.378,0.408]	chr1	33886	209	INTRON	INTRON	PPP1R12B	ENSG00000077157.22	ENST00000391959.5:ENST00000608999.6:ENST00000290419.9:ENST00000491336.5:ENST00000466273.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	79	2	3.47322	3.653845	3.83447	0.00147803	1.86403e-4	0.0348908	0.0119078
chr3	33439135	33439235	1651700	0	-	0.4	(0.378,0.408]	chr3	169400	130	INTRON	INTRON	UBP1	ENSG00000153560.12	ENST00000283629.8:ENST00000447368.6:ENST00000283628.9:ENST00000456378.1:ENST00000496310.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	71	2	1.56313	3.653755	5.74438	0.0474151	5.15539e-5	0.153019	0.00585477
chr1	174508243	174508343	260614	0	+	0.32	(0.28,0.32]	chr1	30824	588	INTRON	INTRON	RABGAP1L	ENSG00000152061.24	ENST00000357444.10:ENST00000251507.8:ENST00000681986.1:ENST00000367690.5:ENST00000526253.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	46	2	2.87382	3.6536099999999996	4.4334	0.0163355	0.014868	0.109464	0.0989021
chr4	2503519	2503618	1912178	0	+	0.343434	(0.32,0.35]	chr4	191953	24	INTRON	INTRON	RNF4	ENSG00000063978.16	ENST00000541204.5:ENST00000502316.5:ENST00000509388.5:ENST00000507247.5:ENST00000314289.13:ENST00000511843.5:ENST00000509258.5:ENST00000513284.5:ENST00000511859.5:ENST00000513643.5:ENST00000506706.5:ENST00000511600.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	45	2	3.03597	3.65355	4.27113	0.0199982	0.00832487	0.120668	0.0774402
chr6	146857936	146858036	2988424	0	+	0.41	(0.408,0.44]	chr6	279960	1	SS5_PROX	SS5_PROX:INTRON	ENSG00000227748	ENSG00000227748.2	ENST00000661207.1:ENST00000657330.1:ENST00000436295.2:ENST00000658795.1	lncRNA	lncRNA	lncRNA	lncRNA	3	103	2	3.12171	3.6534500000000003	4.18519	6.63666e-4	2.59215e-5	0.0234815	0.00400663
chr8	96255865	96255964	3995132	0	-	0.40404	(0.378,0.408]	chr8	365871	44	INTRON	INTRON	MTERF3	ENSG00000156469.9	ENST00000523821.5:ENST00000287025.4:ENST00000522822.5:ENST00000524341.5	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	2.36428	3.65339	4.9425	0.0441088	0.00452675	0.162255	0.0595107
chr12	76075338	76075438	5370132	0	-	0.27	[0,0.28]	chr12	512329	7	INTRON	INTRON	NAP1L1	ENSG00000187109.15	ENST00000618691.5:ENST00000393263.7:ENST00000431879.7:ENST00000547773.5:ENST00000544816.5:ENST00000542344.5:ENST00000535020.6:ENST00000549596.5:ENST00000552342.5:ENST00000548044.5:ENST00000550934.5:ENST00000551992.5:ENST00000548273.5:ENST00000551600.5:ENST00000547704.5:ENST00000549988.5:ENST00000547479.5:ENST00000549479.1:ENST00000551500.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	47	2	2.33055	3.65337	4.97619	0.062338	0.00535756	0.175343	0.0663076
chr3	138754454	138754554	1830692	0	-	0.28	[0,0.28]	chr3	184037	113	INTRON	INTRON	PIK3CB	ENSG00000051382.9	ENST00000674063.1:ENST00000289153.6:ENST00000477593.5:ENST00000462898.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	47	2	2.33055	3.65337	4.97619	0.062338	0.00535756	0.175343	0.0663076
chr11	112084754	112084853	4865478	0	+	0.343434	(0.32,0.35]	chr11	454003	19	UTR3	UTR3:EXON_MRNA	NKAPD1	ENSG00000150776.18	ENST00000532163.5:ENST00000280352.13:ENST00000393047.8	protein_coding	protein_coding	protein_coding	protein_coding	2	57	2	2.30731	3.653265	4.99922	0.0176772	0.00223907	0.10525	0.0435144
chr12	104642379	104642479	5212542	0	+	0.4	(0.378,0.408]	chr12	493329	400	INTRON	INTRON	CHST11	ENSG00000171310.11	ENST00000303694.6:ENST00000549260.5:ENST00000549016.1	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	2.38873	3.653245	4.91776	0.0458857	0.00196368	0.149888	0.0411469
chr15	73564855	73564955	6220487	0	-	0.39	(0.378,0.408]	chr15	593882	12	INTRON	INTRON	NPTN	ENSG00000156642.17	ENST00000351217.10:ENST00000345330.9:ENST00000565325.5:ENST00000562924.5:ENST00000563691.5	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	2.38873	3.653245	4.91776	0.0458857	0.00196368	0.149888	0.0411469
chr17	60289582	60289682	6804844	0	-	0.39	(0.378,0.408]	chr17	672342	5	INTRON	INTRON	USP32	ENSG00000170832.13	ENST00000300896.9:ENST00000590133.5:ENST00000589335.5:ENST00000393003.7	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	2.38873	3.653245	4.91776	0.0458857	0.00196368	0.149888	0.0411469
chr1	180658564	180658664	269861	0	+	0.57	(0.515,0.57]	chr1	31614	259	INTRON	INTRON	XPR1	ENSG00000143324.14	ENST00000367590.9:ENST00000367589.3	protein_coding	protein_coding	protein_coding	protein_coding	2	67	2	3.30665	3.653165	3.99968	0.00213226	5.71792e-5	0.041756	0.00617842
chr9	112291155	112291254	4317534	0	-	0.444444	(0.44,0.476]	chr9	397072	148	INTRON	INTRON	PTBP3	ENSG00000119314.16	ENST00000334318.10:ENST00000458258.5:ENST00000374257.6:ENST00000374255.6:ENST00000343327.6:ENST00000487997.1:ENST00000210227.4:ENST00000450374.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	155	2	2.94837	3.6531400000000005	4.35791	3.65445e-5	1.84928e-5	0.00484751	0.00349761
chr13	50204918	50205017	5492213	0	+	0.383838	(0.378,0.408]	chr13	526049	185	INTRON	INTRON	DLEU1	ENSG00000176124.15	ENST00000467721.5:ENST00000468522.5:ENST00000490577.5:ENST00000491341.5:ENST00000491615.5:ENST00000463474.7:ENST00000468168.5:ENST00000476738.5:ENST00000461527.7:ENST00000486895.5:ENST00000485007.5:ENST00000475913.5:ENST00000484529.5	lncRNA	lncRNA	lncRNA	lncRNA	1	38	2	2.53503	3.65304	4.77105	0.0319942	0.00330823	0.13174	0.0527031
chr7	128604517	128604617	3408094	0	+	0.34	(0.32,0.35]	chr7	318364	121	INTRON	INTRON	ENSG00000280828:ENSG00000242588	ENSG00000280828.1:ENSG00000242588.6	ENST00000479267.2:ENST00000605862.5	lncRNA	lncRNA	lncRNA:unprocessed_pseudogene	lncRNA:unprocessed_pseudogene	1	41	2	2.30673	3.652975	4.99922	0.0584434	0.00223907	0.167723	0.0435144
chr8	89722123	89722221	3984924	0	-	0.326531	(0.32,0.35]	chr8	364990	8	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	RIPK2-DT	ENSG00000251136.10	ENST00000688654.1:ENST00000690564.1:ENST00000661105.1:ENST00000685145.1:ENST00000519655.6:ENST00000656898.2:ENST00000685787.1:ENST00000693018.1:ENST00000691313.1:ENST00000691446.1:ENST00000524190.2:ENST00000691897.1:ENST00000685988.1:ENST00000691595.1:ENST00000688855.1:ENST00000504145.6:ENST00000685619.1:ENST00000653574.1:ENST00000687824.1:ENST00000658477.1:ENST00000521996.2:ENST00000523995.1:ENST00000669938.1:ENST00000692782.1	lncRNA	lncRNA	lncRNA	lncRNA	1	41	2	2.30673	3.652975	4.99922	0.0584434	0.00223907	0.167723	0.0435144
chr9	112691971	112692068	4318047	0	-	0.360825	(0.35,0.378]	chr9	397104	20	INTRON	INTRON	INIP	ENSG00000148153.14	ENST00000374242.9:ENST00000497712.6:ENST00000374236.5:ENST00000481146.6:ENST00000374234.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	64	2	1.75081	3.6529049999999996	5.555	0.0427459	1.71389e-4	0.148082	0.0113605
chr18	3597073	3597173	6867377	0	+	0.36	(0.35,0.378]	chr18	680386	6	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DLGAP1-AS1	ENSG00000177337.9	ENST00000577995.6:ENST00000573355.3:ENST00000575606.5:ENST00000317114.3:ENST00000576606.6:ENST00000574411.5:ENST00000669270.1	lncRNA	lncRNA	lncRNA	lncRNA	1	38	2	3.10863	3.652865	4.1971	0.0367539	0.00470896	0.138959	0.0631419
chrX	153933084	153933173	7911784	0	-	0.359551	(0.35,0.378]	chrX	805331	1	INTRON	INTRON	ARHGAP4:NAA10	ENSG00000089820.16:ENSG00000102030.16	ENST00000494813.5:ENST00000464845.6:ENST00000370015.8:ENST00000393712.7:ENST00000370009.5:ENST00000466877.5:ENST00000460996.5:ENST00000370011.7:ENST00000432089.1:ENST00000477750.5:ENST00000393710.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	49	2	2.44701	3.6528549999999997	4.8587	0.00900997	0.00695662	0.0851009	0.0718189
chr1	61456169	61456268	131155	0	+	0.323232	(0.32,0.35]	chr1	14883	9	UTR3	UTR3:EXON_MRNA	NFIA	ENSG00000162599.17	ENST00000664495.1:ENST00000670151.1:ENST00000664149.1:ENST00000662015.1:ENST00000403491.8:ENST00000371187.7:ENST00000663597.1:ENST00000657234.1:ENST00000655770.1:ENST00000357977.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	41	2	2.51061	3.6527149999999997	4.79482	0.0364463	0.00447781	0.138959	0.0610799
chr12	8944663	8944748	5264613	0	-	0.329412	(0.32,0.35]	chr12	501772	4	INTRON	INTRON	M6PR	ENSG00000003056.8	ENST00000000412.8:ENST00000541507.5:ENST00000536844.5:ENST00000543704.5:ENST00000543258.1:ENST00000543834.1:ENST00000544245.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	41	2	2.51061	3.6527149999999997	4.79482	0.0364463	0.00447781	0.138959	0.0610799
chr2	44457960	44458060	766301	0	+	0.34	(0.32,0.35]	chr2	86780	8	INTRON	INTRON	CAMKMT	ENSG00000143919.15	ENST00000378494.8:ENST00000402247.5:ENST00000407131.5:ENST00000428993.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	41	2	2.51061	3.6527149999999997	4.79482	0.0364463	0.00447781	0.138959	0.0610799
chr19	9141788	9141888	7011252	0	+	0.44	(0.408,0.44]	chr19	696234	8	INTRON	INTRON	ZNF317	ENSG00000130803.15	ENST00000247956.11:ENST00000360385.7:ENST00000591278.5:ENST00000419608.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	64	2	1.6546400000000001	3.65257	5.6505	0.0329965	2.70553e-4	0.145298	0.0150813
chr2	15314520	15314619	1070659	0	-	0.434343	(0.408,0.44]	chr2	114263	49	INTRON	INTRON	NBAS	ENSG00000151779.13	ENST00000281513.10:ENST00000442506.5	protein_coding	protein_coding	protein_coding	protein_coding	2	47	2	2.55103	3.652505	4.75398	0.00703931	0.00587353	0.0718189	0.0690758
chr11	46843323	46843423	4948737	0	-	0.49	(0.476,0.515]	chr11	463857	166	INTRON	INTRON	CKAP5	ENSG00000175216.15	ENST00000529230.6:ENST00000312055.9:ENST00000525248.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	47	2	2.53671	3.6524900000000002	4.76827	0.00624027	0.00600704	0.0718843	0.0674604
chr7	152315937	152316037	3680088	0	-	0.36	(0.35,0.378]	chr7	341641	2	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000684262.1:ENST00000682301.1:ENST00000452749.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	39	2	3.21677	3.6524650000000003	4.08816	0.046021	0.00313804	0.149888	0.0514466
chr14	21267156	21267253	5835146	0	-	0.278351	[0,0.28]	chr14	554469	18	INTRON	INTRON	HNRNPC	ENSG00000092199.19	ENST00000336053.10:ENST00000553300.6:ENST00000554969.5:ENST00000556142.5:ENST00000554455.5:ENST00000553753.5:ENST00000555309.5:ENST00000555914.5:ENST00000557442.5:ENST00000556628.5:ENST00000556513.5:ENST00000555883.5:ENST00000557201.5:ENST00000420743.6:ENST00000554539.5:ENST00000554383.5:ENST00000555215.5:ENST00000555137.5:ENST00000554891.5:ENST00000556226.5:ENST00000555176.5:ENST00000553614.5:ENST00000557336.1:ENST00000557768.1:ENST00000557033.1:ENST00000555127.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	78	2	1.69895	3.65243	5.60591	0.0568939	6.01442e-4	0.167723	0.0223465
chr19	5637914	5638013	7005445	0	+	0.373737	(0.35,0.378]	chr19	694957	111	INTRON	INTRON	SAFB	ENSG00000160633.13	ENST00000589863.5:ENST00000588852.2:ENST00000591666.5:ENST00000292123.9:ENST00000592224.5:ENST00000586934.5:ENST00000454510.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	53	2	1.98929	3.652425	5.31556	0.0417909	4.97087e-4	0.147075	0.0201536
chr14	61729405	61729504	5905952	0	-	0.454545	(0.44,0.476]	chr14	561059	120	INTRON	INTRON	HIF1A-AS3	ENSG00000258667.2	ENST00000660325.1:ENST00000554254.1	lncRNA	lncRNA	lncRNA	lncRNA	2	50	2	2.24189	3.6523849999999998	5.06288	0.0193405	0.00102416	0.108861	0.0294041
chr1	151401829	151401883	225715	0	+	0.351852	(0.35,0.378]	chr1	25852	1	UTR3	UTR3:EXON_MRNA	PSMB4	ENSG00000159377.11	ENST00000290541.7:ENST00000476467.1:ENST00000493673.1:ENST00000474100.1:ENST00000466425.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	53	2	2.04224	3.652375	5.26251	0.0363073	6.20882e-4	0.138959	0.0223951
chr6	26125645	26125745	2837008	0	+	0.46	(0.44,0.476]	chr6	266010	5	INTRON	INTRON	H2AC6	ENSG00000180573.10	ENST00000314088.6:ENST00000602637.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	315	2	3.52066	3.65228	3.7839	1.8369e-6	8.7773e-8	9.15885e-4	1.27261e-4
chr5	138167039	138167133	2731300	0	-	0.351064	(0.35,0.378]	chr5	257139	2	SS3_PROX	SS3_PROX:INTRON	BRD8	ENSG00000112983.18	ENST00000254900.10:ENST00000402931.5:ENST00000230901.9:ENST00000454473.5:ENST00000418329.5:ENST00000441656.5:ENST00000411594.6:ENST00000512140.5:ENST00000453824.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	154	2	3.23731	3.65224	4.06717	1.16746e-4	1.73083e-5	0.00976708	0.00316166
chr17	67200513	67200612	6825375	0	-	0.454545	(0.44,0.476]	chr17	674518	47	INTRON	INTRON	HELZ	ENSG00000198265.12	ENST00000358691.10:ENST00000579953.5:ENST00000580168.5:ENST00000417253.7:ENST00000580662.5	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:nonsense_mediated_decay:processed_transcript	3	107	2	3.43305	3.65203	3.87101	0.00159668	6.14028e-6	0.0364566	0.0017399
chr1	70236924	70237024	142761	0	+	0.49	(0.476,0.515]	chr1	16015	1	SS3_PROX	SS3_PROX:INTRON	SRSF11	ENSG00000116754.14	ENST00000370951.5:ENST00000687381.1:ENST00000370950.7:ENST00000370949.2:ENST00000395136.7:ENST00000486667.5:ENST00000484162.5:ENST00000463859.6:ENST00000690370.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	47	2	1.99341	3.651995	5.31058	0.037389	9.15544e-4	0.155878	0.0278396
chrX	102785310	102785410	7696064	0	+	0.42	(0.408,0.44]	chrX	787606	145	INTRON	INTRON	LINC00630	ENSG00000223546.8	ENST00000661018.1:ENST00000431616.5:ENST00000664568.1:ENST00000668536.1:ENST00000440496.5:ENST00000420471.5:ENST00000663114.1:ENST00000658813.1:ENST00000435966.1:ENST00000656628.1	lncRNA	lncRNA	lncRNA	lncRNA	2	47	2	2.00768	3.6519000000000004	5.29612	0.035843	0.00113523	0.152216	0.0307488
chr1	174306625	174306725	258593	0	+	0.37	(0.35,0.378]	chr1	30802	11	INTRON	INTRON	RABGAP1L	ENSG00000152061.24	ENST00000357444.10:ENST00000251507.8:ENST00000681986.1:ENST00000457696.1:ENST00000367690.5	protein_coding	protein_coding	protein_coding	protein_coding	6	82	2	1.31002	3.65161	5.9932	0.0562395	1.00366e-4	0.184114	0.00904854
chr7	44635644	44635743	3314578	0	+	0.353535	(0.35,0.378]	chr7	307897	107	INTRON	INTRON	OGDH	ENSG00000105953.16	ENST00000439616.6:ENST00000443864.6:ENST00000449767.5:ENST00000447398.5:ENST00000419661.5:ENST00000222673.6:ENST00000444676.5	protein_coding	protein_coding	protein_coding	protein_coding	3	59	2	2.20096	3.65161	5.10226	0.0087123	0.00327038	0.0844834	0.0508595
chr7	74889100	74889200	3556750	0	-	0.23	[0,0.28]	chr7	331186	4	SS3_PROX	SS3_PROX:INTRON	STAG3L2	ENSG00000277072.5	ENST00000650988.1:ENST00000652688.1:ENST00000426587.5:ENST00000622110.5:ENST00000618922.4:ENST00000611766.4:ENST00000622215.1	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript:transcribed_unprocessed_pseudogene	2	58	2	2.24546	3.6514699999999998	5.05748	0.0206502	0.0113653	0.122348	0.0886611
chr9	112291055	112291155	4317533	0	-	0.53	(0.515,0.57]	chr9	397072	147	INTRON	INTRON	PTBP3	ENSG00000119314.16	ENST00000334318.10:ENST00000458258.5:ENST00000374257.6:ENST00000374255.6:ENST00000343327.6:ENST00000487997.1:ENST00000210227.4:ENST00000450374.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	42	2	2.39351	3.651315	4.90912	0.0100431	0.0021669	0.0881096	0.0417866
chr2	23787016	23787114	1079524	0	-	0.387755	(0.378,0.408]	chr2	115215	4	INTRON	INTRON	ATAD2B	ENSG00000119778.15	ENST00000238789.10:ENST00000381024.4:ENST00000474583.5:ENST00000478885.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	47	2	2.29798	3.651285	5.00459	0.0147606	0.00371142	0.106702	0.0535094
chr9	282392	282491	4088748	0	+	0.383838	(0.378,0.408]	chr9	372423	11	INTRON	INTRON	DOCK8	ENSG00000107099.18	ENST00000469197.5:ENST00000432829.7:ENST00000524396.5:ENST00000682121.1:ENST00000454469.6:ENST00000684384.1:ENST00000684166.1:ENST00000382329.2:ENST00000682249.1:ENST00000453981.5:ENST00000382341.5:ENST00000487230.5:ENST00000483757.6:ENST00000478380.5:ENST00000469391.5:ENST00000495184.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	47	2	2.29798	3.651285	5.00459	0.0147606	0.00371142	0.106702	0.0535094
chr9	135820538	135820638	4371384	0	-	0.39	(0.378,0.408]	chr9	402422	3	SS5_PROX	SS5_PROX:INTRON	CAMSAP1	ENSG00000130559.19	ENST00000389532.9:ENST00000312405.10:ENST00000483991.5:ENST00000409386.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	47	2	2.29798	3.651285	5.00459	0.0147606	0.00371142	0.106702	0.0535094
chr1	27247703	27247803	53148	0	+	0.4	(0.378,0.408]	chr1	6792	124	INTRON	INTRON	WDTC1	ENSG00000142784.16	ENST00000319394.8:ENST00000361771.7	protein_coding	protein_coding	protein_coding	protein_coding	2	48	2	2.56408	3.651235	4.73839	0.00837252	0.00566993	0.0774402	0.0678837
chr7	105140222	105140321	3601400	0	-	0.40404	(0.378,0.408]	chr7	336081	68	INTRON	INTRON	SRPK2	ENSG00000135250.17	ENST00000393651.8:ENST00000357311.7:ENST00000466917.1:ENST00000485455.1:ENST00000477925.5:ENST00000489828.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	48	2	2.56408	3.651235	4.73839	0.00837252	0.00566993	0.0774402	0.0678837
chr1	204533319	204533418	297591	0	+	0.40404	(0.378,0.408]	chr1	34289	1	INTRON	INTRON	MDM4	ENSG00000198625.14	ENST00000367183.7:ENST00000391947.6:ENST00000454264.6:ENST00000612738.4:ENST00000614459.4:ENST00000616250.4:ENST00000367182.8:ENST00000463049.5:ENST00000470908.5:ENST00000471783.1:ENST00000367180.5:ENST00000507825.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	47	2	2.23831	3.6512149999999997	5.06412	0.0179575	0.0030522	0.114265	0.0493883
chr7	74238326	74238422	3555610	0	-	0.40625	(0.378,0.408]	chr7	330992	5	INTRON	INTRON	RFC2	ENSG00000049541.11	ENST00000352131.7:ENST00000055077.8:ENST00000621097.4:ENST00000485545.5:ENST00000497430.1:ENST00000494019.5:ENST00000470266.5:ENST00000480432.5:ENST00000479105.6:ENST00000491206.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	47	2	2.23831	3.6512149999999997	5.06412	0.0179575	0.0030522	0.114265	0.0493883
chr1	88813556	88813644	157076	0	+	0.352273	(0.35,0.378]	chr1	17113	1	CDS	CDS:EXON_MRNA	PKN2	ENSG00000065243.20	ENST00000370521.8:ENST00000370513.9	protein_coding	protein_coding	protein_coding	protein_coding	5	151	2	2.92583	3.651115	4.3764	1.1531e-4	2.41397e-5	0.0092036	0.00403538
chr3	44841338	44841438	1413058	0	+	0.4	(0.378,0.408]	chr3	148323	1	SS5_PROX	SS5_PROX:INTRON	KIF15	ENSG00000163808.17	ENST00000438321.5:ENST00000326047.9:ENST00000425755.5:ENST00000453693.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	79	2	3.57821	3.65109	3.72397	9.60401e-4	3.23378e-4	0.0282401	0.0159645
chr12	104489609	104489709	5211010	0	+	0.48	(0.476,0.515]	chr12	493315	317	INTRON	INTRON	CHST11	ENSG00000171310.11	ENST00000303694.6:ENST00000547956.1:ENST00000549260.5:ENST00000546689.1	protein_coding	protein_coding	protein_coding	protein_coding	3	56	2	2.20789	3.6510599999999998	5.09423	0.00820497	0.00204588	0.081115	0.04086
chr13	113586847	113586947	5549852	0	+	0.52	(0.515,0.57]	chr13	530371	6	INTRON	INTRON	TFDP1	ENSG00000198176.13	ENST00000475254.5:ENST00000465174.1:ENST00000375370.10:ENST00000544902.5:ENST00000408980.6:ENST00000453989.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	34	2	2.90311	3.651055	4.399	0.0094233	0.00708863	0.0817766	0.0754923
chr17	82292332	82292422	6852868	0	-	0.533333	(0.515,0.57]	chr17	679186	4	SS5_PROX	SS5_PROX:INTRON	LINC01970	ENSG00000265692.1	ENST00000581489.1	lncRNA	lncRNA	lncRNA	lncRNA	1	34	2	2.90311	3.651055	4.399	0.0094233	0.00708863	0.0817766	0.0754923
chr6	89764913	89765012	3161473	0	-	0.525253	(0.515,0.57]	chr6	294808	20	INTRON	INTRON	MDN1	ENSG00000112159.12	ENST00000369393.8:ENST00000629399.2:ENST00000439638.1	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	2.90311	3.651055	4.399	0.0094233	0.00708863	0.0817766	0.0754923
chr15	95667225	95667325	6108639	0	+	0.28	[0,0.28]	chr15	581771	139	INTRON	INTRON	ENSG00000275016	ENSG00000275016.5	ENST00000612595.2:ENST00000661571.1:ENST00000614344.5:ENST00000667344.1:ENST00000666682.1:ENST00000663174.1:ENST00000661536.1:ENST00000615194.1:ENST00000667774.1:ENST00000616588.4:ENST00000656202.1:ENST00000666386.1:ENST00000611285.1	lncRNA	lncRNA	lncRNA	lncRNA	1	47	2	2.20927	3.65104	5.09281	0.0794763	0.00372534	0.19979	0.0561984
chr17	29264891	29264991	6747502	0	-	0.34	(0.32,0.35]	chr17	663221	3	SS3_PROX	SS3_PROX:INTRON	NUFIP2	ENSG00000108256.9	ENST00000225388.9:ENST00000579665.1	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	2.84569	3.65099	4.45629	0.0246089	0.0121137	0.12011	0.0962599
chr18	2721321	2721421	6865544	0	+	0.35	(0.32,0.35]	chr18	680043	25	INTRON	INTRON	SMCHD1	ENSG00000101596.17	ENST00000320876.11:ENST00000688342.1:ENST00000693213.1:ENST00000577880.5:ENST00000584897.5:ENST00000581711.1:ENST00000583441.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	38	2	2.84569	3.65099	4.45629	0.0246089	0.0121137	0.12011	0.0962599
chr20	63927636	63927735	7301286	0	+	0.343434	(0.32,0.35]	chr20	743141	78	INTRON	INTRON	DNAJC5	ENSG00000101152.11	ENST00000360864.9:ENST00000470551.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	38	2	2.84569	3.65099	4.45629	0.0246089	0.0121137	0.12011	0.0962599
chr4	159160769	159160868	2074077	0	+	0.343434	(0.32,0.35]	chr4	205172	562	INTRON	INTRON	RAPGEF2	ENSG00000109756.10	ENST00000644474.1:ENST00000691494.1:ENST00000505478.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	38	2	2.84569	3.65099	4.45629	0.0246089	0.0121137	0.12011	0.0962599
chr5	62322265	62322365	2362193	0	+	0.34	(0.32,0.35]	chr5	227725	100	INTRON	INTRON	KIF2A	ENSG00000068796.19	ENST00000401507.7:ENST00000407818.8:ENST00000674632.1:ENST00000674916.1:ENST00000676413.1:ENST00000676122.1:ENST00000674751.1:ENST00000514082.6:ENST00000675085.1:ENST00000504883.2:ENST00000381103.7:ENST00000676271.1:ENST00000512541.5:ENST00000674733.1:ENST00000506857.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	38	2	2.84569	3.65099	4.45629	0.0246089	0.0121137	0.12011	0.0962599
chr6	20576556	20576656	2828806	0	+	0.35	(0.32,0.35]	chr6	265649	170	INTRON	INTRON	CDKAL1	ENSG00000145996.11	ENST00000274695.8:ENST00000378610.1	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	2.84569	3.65099	4.45629	0.0246089	0.0121137	0.12011	0.0962599
chr7	75453213	75453313	3558599	0	-	0.39	(0.378,0.408]	chr7	331545	106	INTRON	INTRON	POM121C	ENSG00000272391.6	ENST00000615331.5:ENST00000398379.2	protein_coding	protein_coding	protein_coding	protein_coding	6	160	2	2.86053	3.65091	4.44129	6.7208e-5	1.41646e-5	0.00678102	0.00299745
chr4	1879222	1879322	1910648	0	+	0.54	(0.515,0.57]	chr4	191707	73	INTRON	INTRON	NSD2	ENSG00000109685.19	ENST00000508803.6:ENST00000507820.5:ENST00000508355.5:ENST00000514045.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	66	2	3.53844	3.65069	3.76294	7.92613e-4	2.08636e-4	0.0259663	0.0125926
chr7	10519418	10519518	3481973	0	-	0.39	(0.378,0.408]	chr7	325766	663	INTRON	INTRON	MGC4859	ENSG00000283117.1	ENST00000634803.1	lncRNA	lncRNA	lncRNA	lncRNA	2	48	2	1.97143	3.6505549999999998	5.32968	0.0398704	0.00119786	0.161534	0.0315806
chr1	247168552	247168651	683840	0	-	0.373737	(0.35,0.378]	chr1	80174	83	INTRON	INTRON	ZNF124	ENSG00000196418.13	ENST00000472531.5:ENST00000491356.5:ENST00000543802.3:ENST00000340684.10:ENST00000491848.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	53	2	1.93432	3.650525	5.3667299999999996	0.0481438	3.99274e-4	0.153019	0.0179401
chr2	3322341	3322440	1059176	0	-	0.343434	(0.32,0.35]	chr2	112902	19	INTRON	INTRON	EIPR1	ENSG00000032389.13	ENST00000398659.8:ENST00000382125.9:ENST00000455162.5:ENST00000441271.1:ENST00000463662.5:ENST00000435721.5:ENST00000443925.6:ENST00000406835.6:ENST00000444776.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	38	2	2.40308	3.65038	4.89768	0.0417732	0.00793135	0.161736	0.076155
chr2	71339039	71339138	807083	0	+	0.343434	(0.32,0.35]	chr2	90134	41	INTRON	INTRON	ZNF638	ENSG00000075292.19	ENST00000494621.5:ENST00000410075.5:ENST00000466975.5:ENST00000466330.5:ENST00000437658.2:ENST00000464375.5:ENST00000475743.1:ENST00000409544.5:ENST00000455226.5:ENST00000454278.5:ENST00000264447.9:ENST00000454122.1:ENST00000417778.5:ENST00000487707.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	42	2	2.74415	3.65038	4.55661	0.0198267	0.00927858	0.109608	0.0855292
chr21	9352230	9352330	7367655	0	+	0.34	(0.32,0.35]	chr21	751932	83	INTRON	INTRON	ENSG00000278932	ENSG00000278932.5	ENST00000622961.3:ENST00000686553.1:ENST00000691955.1:ENST00000625153.3:ENST00000692626.1:ENST00000685951.1:ENST00000686510.1:ENST00000692884.1	lncRNA	lncRNA	lncRNA	lncRNA	1	38	2	2.40308	3.65038	4.89768	0.0417732	0.00793135	0.161736	0.076155
chr3	195410406	195410506	1895589	0	-	0.33	(0.32,0.35]	chr3	189694	3	SS5_PROX	SS5_PROX:INTRON	ACAP2	ENSG00000114331.16	ENST00000326793.11:ENST00000635383.1:ENST00000480906.5:ENST00000481463.5:ENST00000439666.1:ENST00000447662.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	38	2	2.40308	3.65038	4.89768	0.0417732	0.00793135	0.161736	0.076155
chr5	74751267	74751367	2642180	0	-	0.35	(0.32,0.35]	chr5	251176	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	GFM2	ENSG00000164347.18	ENST00000345239.6:ENST00000296805.8:ENST00000509430.5:ENST00000427854.6:ENST00000509097.1	protein_coding	protein_coding	protein_coding	protein_coding	1	42	2	2.74415	3.65038	4.55661	0.0198267	0.00927858	0.109608	0.0855292
chr2	177386672	177386772	1277092	0	-	0.44	(0.408,0.44]	chr2	134794	378	INTRON	INTRON	NFE2L2:ENSG00000213963	ENSG00000116044.16:ENSG00000213963.6	ENST00000464747.5:ENST00000397057.6:ENST00000456746.5:ENST00000447413.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	7	83	2	1.50103	3.65033	5.79963	0.0237058	1.39468e-4	0.129075	0.0107072
chr1	19228190	19228284	386975	0	-	0.382979	(0.378,0.408]	chr1	46168	1	INTRON	INTRON	EMC1	ENSG00000127463.16	ENST00000477853.6:ENST00000688219.1:ENST00000690732.1:ENST00000690451.1:ENST00000688667.1:ENST00000685099.1:ENST00000685594.1:ENST00000690823.1:ENST00000692207.1:ENST00000688332.1:ENST00000693007.1:ENST00000688918.1:ENST00000375199.7:ENST00000375208.7:ENST00000486405.2:ENST00000494770.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	105	2	3.41888	3.650205	3.88153	2.49905e-4	1.00827e-4	0.0146029	0.00847812
chr6	73520617	73520716	3139453	0	-	0.535354	(0.515,0.57]	chr6	292540	7	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	EEF1A1	ENSG00000156508.19	ENST00000676547.1:ENST00000309268.11:ENST00000610520.5:ENST00000316292.13:ENST00000356303.7:ENST00000331523.7:ENST00000490569.6:ENST00000678515.1:ENST00000676710.1:ENST00000678702.1:ENST00000677236.1:ENST00000455918.2:ENST00000491404.2:ENST00000488500.2:ENST00000495333.6:ENST00000678703.1:ENST00000677062.1:ENST00000678143.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	56	1447	2	3.57043	3.650185	3.72994	4.82994e-10	8.61138e-11	2.97502e-6	1.18093e-6
chr11	59794014	59794109	4795534	0	+	0.242105	[0,0.28]	chr11	443998	1	INTRON	INTRON	STX3	ENSG00000166900.17	ENST00000641815.1:ENST00000337979.9:ENST00000533637.5:ENST00000633708.1:ENST00000529177.5:ENST00000528805.1:ENST00000530221.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	45	2	3.00498	3.65017	4.29536	0.0590175	0.00876063	0.167915	0.0846118
chr4	150996016	150996116	2271579	0	-	0.27	[0,0.28]	chr4	220921	666	INTRON	INTRON	LRBA	ENSG00000198589.14	ENST00000357115.9:ENST00000651943.2:ENST00000510413.5:ENST00000651035.1:ENST00000507224.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	45	2	3.00498	3.65017	4.29536	0.0590175	0.00876063	0.167915	0.0846118
chr2	241318844	241318939	1053636	0	+	0.473684	(0.44,0.476]	chr2	112195	1	INTRON	INTRON	SEPTIN2	ENSG00000168385.18	ENST00000391973.6:ENST00000428282.5:ENST00000492978.5:ENST00000360051.7:ENST00000407017.5:ENST00000445030.5:ENST00000428524.5:ENST00000469434.5:ENST00000616972.4:ENST00000495463.5:ENST00000482304.5:ENST00000475474.5:ENST00000401990.5:ENST00000469175.5:ENST00000407971.5:ENST00000461048.5:ENST00000457335.5:ENST00000436795.5:ENST00000494824.5:ENST00000411484.5:ENST00000462147.5:ENST00000434955.5:ENST00000466211.5:ENST00000391971.7:ENST00000402092.6:ENST00000484740.1:ENST00000473479.5:ENST00000464128.5:ENST00000441533.5:ENST00000467971.5:ENST00000425899.5:ENST00000443492.5:ENST00000437066.5:ENST00000429791.5:ENST00000420786.5:ENST00000475823.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	102	2	3.0335	3.65009	4.26668	9.65686e-4	1.60526e-5	0.0282401	0.00302603
chr1	32857309	32857407	66976	0	+	0.510204	(0.476,0.515]	chr1	8593	14	UTR3	UTR3:EXON_MRNA	S100PBP	ENSG00000116497.18	ENST00000373476.5:ENST00000373475.10	protein_coding	protein_coding	protein_coding	protein_coding	2	76	2	3.62464	3.6500399999999997	3.67544	5.51624e-4	5.079e-4	0.0216014	0.0202328
chr10	69185486	69185586	4445119	0	+	0.49	(0.476,0.515]	chr10	410081	1	SS3_PROX	SS3_PROX:INTRON	SUPV3L1	ENSG00000156502.14	ENST00000359655.9:ENST00000471069.5:ENST00000483572.5:ENST00000422378.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	76	2	3.62464	3.6500399999999997	3.67544	5.51624e-4	5.079e-4	0.0216014	0.0202328
chr11	130301487	130301587	5053732	0	-	0.52	(0.515,0.57]	chr11	476969	392	INTRON	INTRON	ZBTB44	ENSG00000196323.14	ENST00000357899.9:ENST00000527478.6:ENST00000445008.6:ENST00000525842.5:ENST00000397753.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	32	2	2.98677	3.650015	4.31326	0.0141817	0.00632549	0.0959618	0.0722266
chr6	147716652	147716752	2991163	0	+	0.54	(0.515,0.57]	chr6	280167	238	INTRON	INTRON	ENSG00000227681	ENSG00000227681.5	ENST00000427015.1:ENST00000432506.5:ENST00000442094.5:ENST00000434985.1	lncRNA	lncRNA	lncRNA	lncRNA	1	32	2	2.98677	3.650015	4.31326	0.0141817	0.00632549	0.0959618	0.0722266
chr2	70292865	70292960	1152605	0	-	0.347368	(0.32,0.35]	chr2	123148	3	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	SNRPG	ENSG00000143977.14	ENST00000272348.7:ENST00000429728.1:ENST00000482975.6:ENST00000438261.5:ENST00000454893.1:ENST00000413456.6:ENST00000480370.1:ENST00000488400.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	61	2	2.06478	3.64999	5.2352	0.0147778	0.0028268	0.106702	0.0472361
chr15	44662495	44662594	6164771	0	-	0.575758	(0.57,1]	chr15	587446	15	INTRON	INTRON	SPG11	ENSG00000104133.16	ENST00000684235.1:ENST00000261866.12:ENST00000559511.6:ENST00000682065.1:ENST00000682669.1:ENST00000683496.1:ENST00000682460.1:ENST00000682495.1:ENST00000684038.1:ENST00000683186.1:ENST00000683734.1:ENST00000535302.6:ENST00000427534.6:ENST00000558319.5:ENST00000684676.1:ENST00000682788.1:ENST00000683121.1:ENST00000682915.1:ENST00000683255.1:ENST00000683573.1:ENST00000682877.1:ENST00000559193.5:ENST00000684490.1:ENST00000682410.1:ENST00000682648.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	88	2	3.18352	3.6499449999999998	4.11637	3.76713e-5	3.32545e-7	0.00491469	3.12285e-4
chr2	131565253	131565351	867437	0	+	0.418367	(0.408,0.44]	chr2	97472	5	EXON_LNCRNA	EXON_LNCRNA	ENSG00000286208	ENSG00000286208.1	ENST00000652012.1	lncRNA	lncRNA	lncRNA	lncRNA	2	50	2	2.11447	3.649915	5.18536	0.0285207	6.17381e-4	0.12666	0.0223951
chr5	176358664	176358763	2775274	0	-	0.474747	(0.44,0.476]	chr5	261341	10	INTRON	INTRON	KIAA1191	ENSG00000122203.15	ENST00000393725.6:ENST00000298569.9:ENST00000393728.6:ENST00000614420.4:ENST00000620366.4:ENST00000510164.5:ENST00000533553.5:ENST00000506983.5:ENST00000503082.5:ENST00000504688.5:ENST00000506668.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	102	2	3.5823	3.649825	3.71735	4.72844e-4	3.73617e-5	0.0201458	0.00489903
chr1	52402820	52402912	457057	0	-	0.5	(0.476,0.515]	chr1	54918	2	INTRON	INTRON	ORC1	ENSG00000085840.13	ENST00000371568.8:ENST00000371566.1	protein_coding	protein_coding	protein_coding	protein_coding	4	122	2	3.32077	3.64981	3.97885	1.30749e-4	3.02034e-5	0.0103941	0.0043803
chr12	24868535	24868635	5297099	0	-	0.35	(0.32,0.35]	chr12	503853	182	INTRON	INTRON	BCAT1	ENSG00000060982.15	ENST00000261192.12:ENST00000538118.5:ENST00000342945.9:ENST00000539282.5:ENST00000539780.5:ENST00000544418.1:ENST00000612790.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:processed_transcript	3	61	2	1.83315	3.649785	5.46642	0.0313348	0.00127669	0.144381	0.0326395
chr15	82372825	82372916	6246972	0	-	0.43956	(0.408,0.44]	chr15	596122	8	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO	ENSG00000237550	ENSG00000237550.6	ENST00000418824.3:ENST00000689209.1:ENST00000690032.1:ENST00000684931.1:ENST00000684990.1:ENST00000688304.1:ENST00000690968.1:ENST00000466501.1:ENST00000692949.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript:transcribed_processed_pseudogene	6	77	2	1.61024	3.64975	5.68926	0.0200746	2.2853e-4	0.121073	0.0138641
chr6	147660702	147660760	2990601	0	+	0.534483	(0.515,0.57]	chr6	280156	1	EXON_LNCRNA	EXON_LNCRNA	ENSG00000227681	ENSG00000227681.5	ENST00000427015.1:ENST00000432506.5	lncRNA	lncRNA	lncRNA	lncRNA	4	61	2	1.68687	3.64968	5.61249	0.0300837	4.24748e-5	0.129186	0.00526976
chr7	5054718	5054817	3271806	0	+	0.444444	(0.44,0.476]	chr7	304061	63	INTRON	INTRON	RBAK	ENSG00000146587.18	ENST00000353796.7:ENST00000396912.2	protein_coding	protein_coding	protein_coding	protein_coding	3	102	2	3.18905	3.649635	4.11022	3.33091e-4	7.0223e-5	0.0162254	0.00749221
chr16	30954213	30954304	6339972	0	+	0.395604	(0.378,0.408]	chr16	608084	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	ENSG00000261487:ORAI3	ENSG00000261487.1:ENSG00000175938.7	ENST00000566056.1:ENST00000562642.1:ENST00000318663.5:ENST00000566237.1:ENST00000562699.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	3	107	2	3.26619	3.649565	4.03294	3.62021e-4	6.52685e-5	0.0176126	0.00669119
chr10	68930617	68930716	4443315	0	+	0.50505	(0.476,0.515]	chr10	409779	103	INTRON	INTRON	DDX50	ENSG00000107625.14	ENST00000373585.8:ENST00000460470.1:ENST00000466265.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	76	2	1.62782	3.64948	5.67114	0.0274391	6.83906e-5	0.123904	0.00684369
chr2	134925674	134925773	872306	0	+	0.353535	(0.35,0.378]	chr2	97663	54	INTRON	INTRON	CCNT2	ENSG00000082258.13	ENST00000419781.5:ENST00000446247.5:ENST00000264157.10:ENST00000452839.5:ENST00000295238.10:ENST00000475094.1:ENST00000417175.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	135	2	2.59391	3.64943	4.70495	0.00229337	1.29513e-6	0.0428247	6.69458e-4
chr5	146251010	146251110	2514596	0	+	0.56	(0.515,0.57]	chr5	240194	132	INTRON	INTRON	ENSG00000275740:RBM27	ENSG00000275740.1:ENSG00000091009.8	ENST00000506502.2:ENST00000265271.7	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	2.46104	3.6493400000000005	4.83764	0.032841	0.00279527	0.145164	0.0469265
chr6	5404801	5404901	2794105	0	+	0.55	(0.515,0.57]	chr6	263671	1	SS5_PROX	SS5_PROX:INTRON	FARS2	ENSG00000145982.13	ENST00000324331.10:ENST00000648580.1:ENST00000274680.9:ENST00000445533.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	32	2	2.46104	3.6493400000000005	4.83764	0.032841	0.00279527	0.145164	0.0469265
chr5	87363704	87363804	2411761	0	+	0.41	(0.408,0.44]	chr5	232442	2	SS5_PROX	SS5_PROX:INTRON	RASA1	ENSG00000145715.15	ENST00000274376.11:ENST00000515800.6:ENST00000456692.6:ENST00000506290.1:ENST00000512763.5:ENST00000509953.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	37	2	2.43988	3.6493	4.85872	0.0398236	0.00221911	0.143072	0.0435144
chrX	70306983	70307082	7675479	0	+	0.434343	(0.408,0.44]	chrX	785595	42	INTRON	INTRON	KIF4A	ENSG00000090889.12	ENST00000374403.4	protein_coding	protein_coding	protein_coding	protein_coding	1	37	2	2.43988	3.6493	4.85872	0.0398236	0.00221911	0.143072	0.0435144
chr1	2410868	2410968	363236	0	-	0.41	(0.408,0.44]	chr1	42421	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	PEX10	ENSG00000157911.11	ENST00000288774.8:ENST00000447513.7:ENST00000650293.1:ENST00000507596.5:ENST00000510434.1:ENST00000508384.5:ENST00000514502.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	37	2	2.51492	3.6492	4.78348	0.0329839	0.00290352	0.133816	0.0494641
chr11	78125772	78125870	4998200	0	-	0.438776	(0.408,0.44]	chr11	472368	8	INTRON	INTRON	ALG8	ENSG00000159063.14	ENST00000679559.1:ENST00000680398.1:ENST00000681221.1:ENST00000527099.2:ENST00000681489.1:ENST00000525783.6:ENST00000529139.6:ENST00000680761.1:ENST00000525870.6:ENST00000680866.1:ENST00000680223.1:ENST00000526737.6:ENST00000681575.1:ENST00000299626.10:ENST00000680467.1:ENST00000679497.1:ENST00000681351.1:ENST00000679697.1:ENST00000680580.1:ENST00000526849.6:ENST00000680256.1:ENST00000680797.1:ENST00000681723.1:ENST00000680142.1:ENST00000679685.1:ENST00000681384.1:ENST00000679874.1:ENST00000679444.1:ENST00000680459.1:ENST00000681699.1:ENST00000679986.1:ENST00000680063.1:ENST00000530608.6:ENST00000681765.1:ENST00000681225.1:ENST00000681417.1:ENST00000530910.6:ENST00000680329.1:ENST00000679581.1:ENST00000524925.2:ENST00000376156.7:ENST00000679648.1:ENST00000680101.1:ENST00000680829.1:ENST00000680499.1:ENST00000525761.3:ENST00000532440.6:ENST00000680996.1:ENST00000532306.6:ENST00000680399.1:ENST00000679539.1:ENST00000615266.5:ENST00000681957.1:ENST00000532552.2:ENST00000680643.1:ENST00000530454.6:ENST00000525755.6:ENST00000532050.5:ENST00000680650.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	37	2	2.51492	3.6492	4.78348	0.0329839	0.00290352	0.133816	0.0494641
chr16	68348631	68348731	6372659	0	+	0.44	(0.408,0.44]	chr16	612482	2	SS5_PROX	SS5_PROX:INTRON	PRMT7	ENSG00000132600.18	ENST00000686904.1:ENST00000689486.1:ENST00000693200.1:ENST00000685141.1:ENST00000562050.6:ENST00000565745.6:ENST00000685109.1:ENST00000689637.1:ENST00000692867.1:ENST00000693670.1:ENST00000692760.1:ENST00000687654.1:ENST00000441236.3:ENST00000675132.1:ENST00000688470.1:ENST00000691833.1:ENST00000690432.1:ENST00000691804.1:ENST00000691961.1:ENST00000690932.1:ENST00000692632.1:ENST00000687444.1:ENST00000692283.1:ENST00000692621.1:ENST00000686053.1:ENST00000692966.1:ENST00000691663.1:ENST00000449359.7:ENST00000693309.1:ENST00000690311.1:ENST00000565356.5:ENST00000687558.1:ENST00000339507.9:ENST00000688969.1:ENST00000568975.5:ENST00000567542.5:ENST00000566708.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	37	2	2.51492	3.6492	4.78348	0.0329839	0.00290352	0.133816	0.0494641
chr3	47678998	47679092	1684030	0	-	0.308511	(0.28,0.32]	chr3	172034	3	INTRON	INTRON	SMARCC1	ENSG00000173473.11	ENST00000254480.10:ENST00000425518.5:ENST00000462198.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	95	2	3.40041	3.649085	3.89776	0.00273088	2.03846e-4	0.0467642	0.0124395
chr3	182914312	182914405	1579116	0	+	0.172043	[0,0.28]	chr3	162875	4	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	ATP11B	ENSG00000058063.16	ENST00000323116.10:ENST00000498086.5:ENST00000466758.5:ENST00000491699.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	59	2	2.41169	3.6489700000000003	4.88625	0.0173315	0.0122872	0.104099	0.0970106
chr7	157199222	157199322	3454555	0	+	0.29	(0.28,0.32]	chr7	322959	65	INTRON	INTRON	UBE3C	ENSG00000009335.18	ENST00000348165.10	protein_coding	protein_coding	protein_coding	protein_coding	6	237	2	3.31475	3.64891	3.98307	1.82729e-5	1.71095e-5	0.00348613	0.00314674
chr7	101964500	101964600	3367839	0	+	0.38	(0.378,0.408]	chr7	315233	45	INTRON	INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000497815.5:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000558469.5:ENST00000560541.5:ENST00000558836.5:ENST00000606749.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	47	2	2.35527	3.648885	4.9425	0.0121511	0.00452675	0.0963966	0.0595107
chr22	45333981	45334077	7530390	0	+	0.333333	(0.32,0.35]	chr22	769981	9	INTRON	INTRON	FAM118A	ENSG00000100376.12	ENST00000216214.7:ENST00000441876.7:ENST00000487732.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	39	2	3.0247	3.64885	4.273	0.0368357	0.00671684	0.138959	0.0738715
chr17	75210667	75210759	6674310	0	+	0.456522	(0.44,0.476]	chr17	651354	3	INTRON	INTRON	NUP85	ENSG00000125450.11	ENST00000583569.5:ENST00000245544.9:ENST00000583948.5:ENST00000579324.5:ENST00000449421.6:ENST00000581104.5:ENST00000579298.5:ENST00000583548.1:ENST00000577208.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	46	2	2.33272	3.648815	4.96491	0.0129984	0.0034249	0.0991656	0.0517761
chr10	42544256	42544356	4603770	0	-	0.45	(0.44,0.476]	chr10	424114	182	INTRON	INTRON	ZNF37BP	ENSG00000234420.8	ENST00000452075.7:ENST00000692055.1:ENST00000689225.1:ENST00000686311.1:ENST00000686673.1:ENST00000688789.1:ENST00000690905.1:ENST00000435805.7:ENST00000687308.1:ENST00000692559.1:ENST00000690442.1:ENST00000473592.1:ENST00000691808.1:ENST00000692594.1:ENST00000691366.1:ENST00000689409.1:ENST00000685241.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	1	35	2	2.9586	3.648795	4.33899	0.0206616	0.00758318	0.110999	0.0773151
chr13	28201643	28201743	5461464	0	+	0.45	(0.44,0.476]	chr13	523261	39	INTRON	INTRON	PAN3	ENSG00000152520.14	ENST00000503791.5:ENST00000380958.8:ENST00000399613.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	35	2	2.9586	3.648795	4.33899	0.0206616	0.00758318	0.110999	0.0773151
chr17	6922166	6922266	6717425	0	-	0.46	(0.44,0.476]	chr17	658643	405	INTRON	INTRON	ALOX12-AS1	ENSG00000215067.11	ENST00000653385.1:ENST00000659418.1:ENST00000572385.5:ENST00000570562.5:ENST00000575889.5	lncRNA	lncRNA	lncRNA	lncRNA	1	35	2	2.9586	3.648795	4.33899	0.0206616	0.00758318	0.110999	0.0773151
chr12	121211191	121211290	5236694	0	+	0.444444	(0.44,0.476]	chr12	497063	5	INTRON	INTRON	P2RX4	ENSG00000135124.16	ENST00000359949.11:ENST00000543430.5:ENST00000337233.9:ENST00000543984.5:ENST00000499638.6:ENST00000543318.5:ENST00000540930.5:ENST00000538701.5:ENST00000542067.5:ENST00000541187.5:ENST00000538417.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	38	2	2.86231	3.64878	4.43525	0.012214	0.00897296	0.0910127	0.0849778
chr16	28394027	28394126	6468628	0	-	0.40404	(0.378,0.408]	chr16	624662	15	INTRON	INTRON	EIF3CL	ENSG00000205609.13	ENST00000398944.7:ENST00000380876.5	protein_coding	protein_coding	protein_coding	protein_coding	2	47	2	2.17608	3.6486799999999997	5.12128	0.0218783	0.00251746	0.123836	0.0446195
chr15	27091199	27091299	5983355	0	+	0.27	[0,0.28]	chr15	569164	640	INTRON	INTRON	GABRG3	ENSG00000182256.13	ENST00000615808.5:ENST00000555083.5	protein_coding	protein_coding	protein_coding	protein_coding	3	145	2	3.33605	3.648585	3.96112	4.33342e-4	3.05093e-4	0.0190829	0.0155972
chr1	28939358	28939458	59204	0	+	0.22	[0,0.28]	chr1	7621	242	INTRON	INTRON	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000647918.1:ENST00000646800.1:ENST00000644342.1:ENST00000646189.1:ENST00000482464.6:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000646260.1:ENST00000373798.5:ENST00000644600.1:ENST00000649674.1:ENST00000643173.1:ENST00000343067.9:ENST00000644780.1:ENST00000650265.1:ENST00000648181.1:ENST00000643604.1:ENST00000648891.1:ENST00000373797.2:ENST00000349460.9:ENST00000645184.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	46	2	3.09587	3.648465	4.20106	0.0695895	0.00651565	0.184298	0.0735232
chr7	72919004	72919104	3330189	0	+	0.48	(0.476,0.515]	chr7	309571	48	INTRON	INTRON	POM121	ENSG00000196313.13	ENST00000627934.3:ENST00000395270.5	protein_coding	protein_coding	protein_coding	protein_coding	3	102	2	3.27481	3.6484500000000004	4.02209	2.99781e-4	6.68973e-5	0.0160591	0.00677892
chr17	48623920	48624015	6791507	0	-	0.526316	(0.515,0.57]	chr17	670058	4	INTRON	INTRON	HOXB7:HOXB9	ENSG00000260027.5:ENSG00000170689.10	ENST00000567101.2:ENST00000311177.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	61	2	1.63907	3.648225	5.65738	0.0350277	3.32659e-5	0.137535	0.00461719
chr16	4854940	4855038	6283368	0	+	0.581633	(0.57,1]	chr16	601542	14	INTRON	INTRON	UBN1	ENSG00000118900.15	ENST00000592120.5:ENST00000262376.11:ENST00000590769.5:ENST00000396658.8	protein_coding	protein_coding	protein_coding	protein_coding	2	31	2	2.33295	3.648155	4.96336	0.0122896	2.05554e-4	0.091087	0.0124557
chr17	49341308	49341408	6792342	0	-	0.45	(0.44,0.476]	chr17	670175	184	INTRON	INTRON	ZNF652	ENSG00000198740.9	ENST00000430262.3:ENST00000508237.5:ENST00000362063.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	37	2	2.29842	3.64812	4.99782	0.0552483	0.0013223	0.165463	0.0333932
chr8	30708641	30708737	3932554	0	-	0.552083	(0.515,0.57]	chr8	360257	1	INTRON	INTRON	GSR	ENSG00000104687.14	ENST00000221130.11:ENST00000643653.1:ENST00000643525.1:ENST00000537535.5:ENST00000541648.5:ENST00000546342.5:ENST00000523295.5:ENST00000521479.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	51	2	2.31902	3.64812	4.97722	0.00493032	0.00168681	0.0646039	0.0370386
chr8	123377053	123377152	4042446	0	-	0.454545	(0.44,0.476]	chr8	368782	40	INTRON	INTRON	ATAD2	ENSG00000156802.13	ENST00000287394.10:ENST00000517666.5:ENST00000521903.5:ENST00000519124.5:ENST00000521496.5:ENST00000530065.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	37	2	2.29842	3.64812	4.99782	0.0552483	0.0013223	0.165463	0.0333932
chr2	42265051	42265151	759458	0	+	0.4	(0.378,0.408]	chr2	86161	1	SS5_PROX	SS5_PROX:INTRON	EML4	ENSG00000143924.19	ENST00000318522.10:ENST00000402711.6:ENST00000401738.3	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	2.71183	3.64805	4.58427	0.0170789	0.0128325	0.110899	0.0926667
chr7	106257085	106257185	3608305	0	-	0.4	(0.378,0.408]	chr7	336478	27	EXON_MRNA	EXON_MRNA:INTRON	NAMPT	ENSG00000105835.13	ENST00000681491.1:ENST00000222553.8:ENST00000681494.1:ENST00000680708.1:ENST00000681653.1:ENST00000681391.1:ENST00000680991.1:ENST00000680077.1:ENST00000681456.1:ENST00000680675.1:ENST00000681550.1:ENST00000680864.1:ENST00000680584.1:ENST00000680669.1:ENST00000424768.2:ENST00000681255.1:ENST00000679873.1:ENST00000679643.1:ENST00000681878.1:ENST00000489732.2:ENST00000679951.1:ENST00000680823.1:ENST00000680468.1:ENST00000679894.1:ENST00000680482.1:ENST00000463871.2:ENST00000679461.1:ENST00000681372.1:ENST00000681936.1:ENST00000680152.1:ENST00000680616.1:ENST00000681887.1:ENST00000680129.1:ENST00000680786.1:ENST00000681223.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	35	2	2.71183	3.64805	4.58427	0.0170789	0.0128325	0.110899	0.0926667
chr3	15570275	15570374	1622143	0	-	0.464646	(0.44,0.476]	chr3	167792	13	INTRON	INTRON	HACL1	ENSG00000131373.15	ENST00000321169.10:ENST00000628377.2:ENST00000435217.6:ENST00000451445.6:ENST00000383779.8:ENST00000456194.6:ENST00000457447.6:ENST00000422591.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	35	2	2.39604	3.6480200000000003	4.9	0.0404291	0.00423315	0.161534	0.0572185
chr7	158765553	158765653	3689166	0	-	0.47	(0.44,0.476]	chr7	342381	3	INTRON	INTRON	ESYT2	ENSG00000117868.18	ENST00000251527.10:ENST00000275418.13:ENST00000652148.1	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	2.39604	3.6480200000000003	4.9	0.0404291	0.00423315	0.161534	0.0572185
chr2	46582190	46582290	1113940	0	-	0.35	(0.32,0.35]	chr2	119445	2	INTRON	INTRON	PIGF	ENSG00000151665.13	ENST00000281382.11:ENST00000306465.8:ENST00000420164.5:ENST00000482786.5:ENST00000412717.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	70	2	1.59364	3.64802	5.7024	0.0413426	5.25722e-4	0.161557	0.0210958
chrX	53660411	53660511	7821646	0	-	0.32	(0.28,0.32]	chrX	798234	59	INTRON	INTRON	HUWE1	ENSG00000086758.16	ENST00000262854.11:ENST00000342160.7:ENST00000218328.12:ENST00000446750.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	54	2	2.42868	3.647995	4.86731	0.0116253	0.0105331	0.0908969	0.0889104
chr2	38564835	38564934	1099382	0	-	0.383838	(0.378,0.408]	chr2	117895	2	INTRON	INTRON	HNRNPLL	ENSG00000143889.16	ENST00000449105.8:ENST00000409636.5:ENST00000358367.8:ENST00000608859.5:ENST00000378915.7:ENST00000272249.7:ENST00000409328.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	35	2	2.63247	3.647925	4.66338	0.0215745	0.0103469	0.123836	0.0850389
chr17	47453829	47453928	6789434	0	-	0.373737	(0.35,0.378]	chr17	669651	26	INTRON	INTRON	MRPL45P2	ENSG00000228782.8	ENST00000425159.7	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	2	83	2	3.62272	3.6478900000000003	3.67306	7.05001e-4	5.64719e-4	0.024224	0.021704
chr21	39246605	39246704	7464853	0	-	0.292929	(0.28,0.32]	chr21	760470	77	INTRON	INTRON	BRWD1	ENSG00000185658.14	ENST00000333229.6:ENST00000342449.8:ENST00000446924.5:ENST00000380800.7:ENST00000430093.5:ENST00000445245.5:ENST00000445668.5:ENST00000412604.1:ENST00000455867.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	83	2	1.81786	3.647825	5.47779	0.0142986	0.00187048	0.104025	0.0390476
chr17	81919057	81919155	6850459	0	-	0.459184	(0.44,0.476]	chr17	678519	9	UTR3	UTR3:EXON_MRNA:INTRON	SIRT7:MAFG	ENSG00000187531.14:ENSG00000197063.11	ENST00000572902.5:ENST00000357736.9	protein_coding	protein_coding	protein_coding	protein_coding	16	480	2	3.60312	3.647765	3.69241	2.60432e-7	1.36782e-8	2.73104e-4	3.96402e-5
chr21	6343693	6343793	7365012	0	+	0.33	(0.32,0.35]	chr21	751669	137	INTRON	INTRON	ENSG00000278903	ENSG00000278903.4	ENST00000688458.1:ENST00000689306.1:ENST00000624576.3:ENST00000623738.3:ENST00000692237.1:ENST00000624165.1	lncRNA	lncRNA	lncRNA	lncRNA	1	39	2	2.21917	3.64773	5.07629	0.0641245	0.00468114	0.199279	0.0600108
chr8	125223677	125223777	3854810	0	+	0.35	(0.32,0.35]	chr8	355249	410	INTRON	INTRON	NSMCE2	ENSG00000156831.8	ENST00000517532.5:ENST00000287437.8:ENST00000522563.5:ENST00000517315.1	protein_coding	protein_coding	protein_coding	protein_coding	1	39	2	2.21917	3.64773	5.07629	0.0641245	0.00468114	0.199279	0.0600108
chr6	20429722	20429822	2827726	0	+	0.31	(0.28,0.32]	chr6	265575	255	INTRON	INTRON	E2F3	ENSG00000112242.16	ENST00000346618.8:ENST00000535432.2	protein_coding	protein_coding	protein_coding	protein_coding	4	153	2	3.09361	3.64766	4.20171	1.79432e-4	9.99559e-5	0.0116696	0.00904854
chr7	152356494	152356593	3680498	0	-	0.50505	(0.476,0.515]	chr7	341654	119	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000682301.1:ENST00000452749.2:ENST00000680867.1:ENST00000683800.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	65	2	2.14389	3.64766	5.15143	0.00540862	0.00166579	0.066545000000000007	0.0369207
chr7	55545889	55545988	3535473	0	-	0.444444	(0.44,0.476]	chr7	329703	64	INTRON	INTRON	VOPP1	ENSG00000154978.13	ENST00000462326.5:ENST00000285279.10:ENST00000428648.5:ENST00000418904.5:ENST00000454227.5:ENST00000427700.1:ENST00000452832.5:ENST00000453112.5:ENST00000471168.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	37	2	2.67572	3.64763	4.61954	0.0212064	0.00506805	0.113017	0.0646039
chr2	61462162	61462262	1130468	0	-	0.53	(0.515,0.57]	chr2	121499	410	INTRON	INTRON	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000453133.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	105	2	3.25533	3.647575	4.03982	6.5518e-5	3.44919e-5	0.00715707	0.00467863
chr1	227039434	227039532	648901	0	-	0.255102	[0,0.28]	chr1	76960	35	INTRON	INTRON	CDC42BPA	ENSG00000143776.20	ENST00000366766.8:ENST00000366769.7:ENST00000334218.9:ENST00000366767.7:ENST00000448940.5:ENST00000442054.5:ENST00000366764.8:ENST00000441725.1	protein_coding	protein_coding	protein_coding	protein_coding	1	43	2	2.74901	3.647555	4.5461	0.0365918	0.0188843	0.138959	0.118148
chr10	91967756	91967856	4489179	0	+	0.24	[0,0.28]	chr10	413359	6	INTRON	INTRON	BTAF1	ENSG00000095564.15	ENST00000265990.12:ENST00000471217.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	43	2	2.74901	3.647555	4.5461	0.0365918	0.0188843	0.138959	0.118148
chr12	96294498	96294598	5394209	0	-	0.45	(0.44,0.476]	chr12	514398	1	SS5_PROX	SS5_PROX:INTRON	CDK17	ENSG00000059758.8	ENST00000261211.8:ENST00000543119.6:ENST00000542666.5:ENST00000550971.5:ENST00000551484.1:ENST00000553042.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	106	2	2.67282	3.6475100000000005	4.6222	0.00433875	1.68586e-6	0.0579868	7.83961e-4
chr2	111227138	111227238	1209103	0	-	0.32	(0.28,0.32]	chr2	128808	79	INTRON	INTRON	MIR4435-2HG	ENSG00000172965.17	ENST00000645030.2:ENST00000642191.1:ENST00000673798.1:ENST00000645051.2:ENST00000673649.1:ENST00000673962.1:ENST00000674132.1:ENST00000669658.1:ENST00000669917.1:ENST00000661559.1:ENST00000653687.1:ENST00000667670.1:ENST00000609220.2:ENST00000656760.1:ENST00000609902.6:ENST00000666683.1:ENST00000674070.1:ENST00000662335.1:ENST00000664422.1:ENST00000673775.1:ENST00000662889.1:ENST00000665096.1:ENST00000674092.1:ENST00000673958.1:ENST00000673770.1:ENST00000673961.1:ENST00000658936.1:ENST00000662635.1:ENST00000666204.1:ENST00000659458.1:ENST00000664443.1:ENST00000670295.1:ENST00000661655.1:ENST00000666390.1:ENST00000659079.1:ENST00000660442.1:ENST00000664009.1:ENST00000439362.6:ENST00000654473.1:ENST00000664999.1:ENST00000673728.1:ENST00000659791.1:ENST00000666144.1:ENST00000659933.1:ENST00000670715.1:ENST00000656303.1:ENST00000666367.1:ENST00000666652.1:ENST00000669050.1:ENST00000667218.1:ENST00000659806.1:ENST00000656067.1:ENST00000653568.1:ENST00000643013.1:ENST00000673866.1:ENST00000673700.1:ENST00000443467.6:ENST00000451884.6:ENST00000669875.1	lncRNA	lncRNA	lncRNA	lncRNA	2	54	2	1.90263	3.6474900000000003	5.39235	0.0503272	0.0024844	0.17488	0.0446195
chr16	3679890	3679990	6434091	0	-	0.55	(0.515,0.57]	chr16	619344	1	SS3_PROX	SS3_PROX:INTRON	TRAP1	ENSG00000126602.11	ENST00000246957.10:ENST00000538171.5:ENST00000576335.5:ENST00000571804.5:ENST00000574941.5:ENST00000576106.5:ENST00000571538.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	33	2	2.52504	3.6474400000000005	4.76984	0.029342	0.00198034	0.128055	0.0411469
chr21	33270612	33270711	7395861	0	+	0.525253	(0.515,0.57]	chr21	753327	17	INTRON	INTRON	IL10RB	ENSG00000243646.11	ENST00000290200.7:ENST00000422891.5:ENST00000637650.2:ENST00000609556.3:ENST00000696764.1:ENST00000493295.5:ENST00000498371.1:ENST00000696765.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	33	2	2.52504	3.6474400000000005	4.76984	0.029342	0.00198034	0.128055	0.0411469
chr3	197104602	197104702	1901546	0	-	0.54	(0.515,0.57]	chr3	190553	3	SS5_PROX	SS5_PROX:INTRON	DLG1	ENSG00000075711.21	ENST00000667157.1:ENST00000346964.6:ENST00000656428.1:ENST00000663148.1:ENST00000655488.1:ENST00000357674.9:ENST00000671185.1:ENST00000658701.1:ENST00000667104.1:ENST00000661336.1:ENST00000669565.1:ENST00000670455.1:ENST00000656087.1:ENST00000670366.1:ENST00000653583.1:ENST00000653795.1:ENST00000671246.1:ENST00000661453.1:ENST00000665728.1:ENST00000664564.1:ENST00000653331.1:ENST00000660432.1:ENST00000660898.1:ENST00000657381.1:ENST00000659221.1:ENST00000654737.1:ENST00000669332.1:ENST00000659716.1:ENST00000660553.1:ENST00000664991.1:ENST00000419354.5:ENST00000661440.1:ENST00000667971.1:ENST00000670935.1:ENST00000668578.1:ENST00000666007.1:ENST00000661229.1:ENST00000660237.1:ENST00000657098.1:ENST00000661013.1:ENST00000436682.6:ENST00000452595.5:ENST00000662727.1:ENST00000422288.6:ENST00000448528.6:ENST00000443183.5:ENST00000656944.1:ENST00000392382.6:ENST00000450955.5:ENST00000658155.1:ENST00000669714.1:ENST00000654733.1:ENST00000469073.2:ENST00000419227.5:ENST00000392381.7:ENST00000471733.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	33	2	2.52504	3.6474400000000005	4.76984	0.029342	0.00198034	0.128055	0.0411469
chr18	9146056	9146156	6869023	0	+	0.3	(0.28,0.32]	chr18	680561	78	INTRON	INTRON	ANKRD12	ENSG00000101745.17	ENST00000585234.5:ENST00000262126.9:ENST00000577992.1:ENST00000540578.6:ENST00000581635.5:ENST00000400020.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	64	2	1.90249	3.6474200000000003	5.39235	0.0261803	0.0024844	0.133676	0.0446195
chr20	35346181	35346280	7334536	0	-	0.545455	(0.515,0.57]	chr20	747141	22	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	UQCC1	ENSG00000101019.22	ENST00000374380.6:ENST00000374394.7:ENST00000374384.6:ENST00000359226.6:ENST00000349714.9:ENST00000457259.5:ENST00000374385.10:ENST00000453855.5:ENST00000397556.7:ENST00000424405.5:ENST00000497717.5:ENST00000443429.5:ENST00000438533.5:ENST00000397554.5:ENST00000498651.1:ENST00000491125.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	33	2	2.60899	3.647335	4.68568	0.0232669	0.00270027	0.118148	0.0479115
chr1	51535082	51535182	98720	0	+	0.4	(0.378,0.408]	chr1	13212	162	INTRON	INTRON	EPS15-AS1	ENSG00000227070.1	ENST00000415031.1:ENST00000426017.1	lncRNA	lncRNA	lncRNA	lncRNA	1	38	2	2.60296	3.6473250000000004	4.69169	0.0267851	0.00432302	0.123349	0.0599409
chr22	28562658	28562758	7571762	0	-	0.38	(0.378,0.408]	chr22	774287	1197	INTRON	INTRON	TTC28	ENSG00000100154.15	ENST00000397906.7	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	2.60296	3.6473250000000004	4.69169	0.0267851	0.00432302	0.123349	0.0599409
chr8	15679229	15679329	3705533	0	+	0.39	(0.378,0.408]	chr8	343587	50	INTRON	INTRON	TUSC3	ENSG00000104723.21	ENST00000382020.8:ENST00000515859.5:ENST00000506802.5:ENST00000503731.6:ENST00000510836.5:ENST00000509380.5:ENST00000511783.2:ENST00000508446.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	38	2	2.60296	3.6473250000000004	4.69169	0.0267851	0.00432302	0.123349	0.0599409
chr19	12632446	12632545	7021868	0	+	0.373737	(0.35,0.378]	chr19	698093	33	UTR3	UTR3:EXON_MRNA	ZNF791	ENSG00000173875.14	ENST00000446165.2:ENST00000343325.9	protein_coding	protein_coding	protein_coding	protein_coding	1	39	2	2.39939	3.64731	4.89523	0.0458078	0.00253947	0.149888	0.0465056
chr20	1377129	1377229	7305213	0	-	0.37	(0.35,0.378]	chr20	743688	3	SS5_PROX	SS5_PROX:INTRON	FKBP1A	ENSG00000088832.18	ENST00000677937.1:ENST00000439640.5:ENST00000618612.5:ENST00000400137.9:ENST00000460490.2:ENST00000678136.1:ENST00000677335.1:ENST00000381719.8:ENST00000678408.1:ENST00000381724.8:ENST00000381715.4:ENST00000678325.1:ENST00000612074.5:ENST00000474726.5:ENST00000677078.1:ENST00000677533.1:ENST00000679195.1:ENST00000614856.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	39	2	2.39939	3.64731	4.89523	0.0458078	0.00253947	0.149888	0.0465056
chr3	9366309	9366407	1358664	0	+	0.377551	(0.35,0.378]	chr3	142603	6	INTRON	INTRON	THUMPD3	ENSG00000134077.16	ENST00000419437.5:ENST00000345094.7:ENST00000452837.7:ENST00000515662.6	protein_coding	protein_coding	protein_coding	protein_coding	1	39	2	2.39939	3.64731	4.89523	0.0458078	0.00253947	0.149888	0.0465056
chr15	28276693	28276792	6123606	0	-	0.363636	(0.35,0.378]	chr15	583381	13	INTRON	INTRON	HERC2	ENSG00000128731.18	ENST00000261609.13:ENST00000564734.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	39	2	2.47065	3.64721	4.82377	0.0386172	0.00325499	0.142656	0.0524329
chr22	38306827	38306926	7587081	0	-	0.373737	(0.35,0.378]	chr22	776605	32	INTRON	INTRON	CSNK1E	ENSG00000213923.13	ENST00000359867.7:ENST00000396832.6:ENST00000403904.5:ENST00000413574.6:ENST00000405675.7:ENST00000430335.1	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	2.6498	3.647185	4.64457	0.0210137	0.012652	0.122348	0.0926667
chr4	73126405	73126504	2159487	0	-	0.353535	(0.35,0.378]	chr4	212706	7	INTRON	INTRON	ANKRD17	ENSG00000132466.20	ENST00000358602.9:ENST00000558247.5:ENST00000330838.10:ENST00000509867.6:ENST00000561029.1:ENST00000514252.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	36	2	2.6498	3.647185	4.64457	0.0210137	0.012652	0.122348	0.0926667
chr5	173065935	173066034	2548788	0	+	0.373737	(0.35,0.378]	chr5	243321	56	INTRON	INTRON	CREBRF	ENSG00000164463.12	ENST00000296953.6:ENST00000522692.5:ENST00000520420.5:ENST00000520464.1:ENST00000523161.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	36	2	2.6498	3.647185	4.64457	0.0210137	0.012652	0.122348	0.0926667
chr7	67289893	67289992	3541737	0	-	0.363636	(0.35,0.378]	chr7	330380	18	INTRON	INTRON	PMS2P4	ENSG00000067601.9	ENST00000685171.1:ENST00000688358.1:ENST00000692496.1:ENST00000685583.1:ENST00000688710.1:ENST00000684859.1:ENST00000685318.1:ENST00000691713.1:ENST00000686389.1:ENST00000690253.1:ENST00000688815.1:ENST00000692171.1:ENST00000692360.1:ENST00000689281.1:ENST00000690241.1:ENST00000689629.1:ENST00000689043.1:ENST00000688809.1:ENST00000687432.1:ENST00000687680.1:ENST00000686900.1:ENST00000691782.1:ENST00000693356.1:ENST00000691384.1:ENST00000690440.1:ENST00000686719.1:ENST00000686561.1:ENST00000688238.1:ENST00000687826.1:ENST00000689908.1:ENST00000689385.1:ENST00000689855.1:ENST00000691806.1:ENST00000689028.1:ENST00000688599.1:ENST00000690886.1:ENST00000688434.1:ENST00000689554.1:ENST00000414507.3:ENST00000685978.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	1	36	2	2.6498	3.647185	4.64457	0.0210137	0.012652	0.122348	0.0926667
chr7	158741896	158741996	3688922	0	-	0.36	(0.35,0.378]	chr7	342328	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	ESYT2	ENSG00000117868.18	ENST00000251527.10:ENST00000275418.13:ENST00000652148.1:ENST00000435514.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	36	2	2.6498	3.647185	4.64457	0.0210137	0.012652	0.122348	0.0926667
chr19	28480168	28480268	7165896	0	-	0.19	[0,0.28]	chr19	724189	119	INTRON	INTRON	ENSG00000283403:ENSG00000267243	ENSG00000283403.1:ENSG00000267243.6	ENST00000592347.5:ENST00000593065.5	lncRNA	lncRNA	lncRNA	lncRNA	1	43	2	2.29142	3.647025	5.00263	0.0592143	0.013055	0.189982	0.093385
chr3	155905959	155906059	1537486	0	+	0.27	[0,0.28]	chr3	160113	4	SS3_PROX	SS3_PROX:INTRON	GMPS	ENSG00000163655.16	ENST00000496455.7:ENST00000295920.7:ENST00000476145.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	43	2	2.29142	3.647025	5.00263	0.0592143	0.013055	0.189982	0.093385
chr7	133439101	133439201	3420029	0	+	0.26	[0,0.28]	chr7	319348	423	INTRON	INTRON	EXOC4	ENSG00000131558.15	ENST00000486013.5:ENST00000393161.6:ENST00000253861.5:ENST00000462055.5:ENST00000486409.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	43	2	2.29142	3.647025	5.00263	0.0592143	0.013055	0.189982	0.093385
chr1	110356231	110356331	182513	0	+	0.3	(0.28,0.32]	chr1	20256	2	SS5_PROX	SS5_PROX:INTRON	LAMTOR5-AS1	ENSG00000224699.10	ENST00000626572.2	lncRNA	lncRNA	lncRNA	lncRNA	6	195	2	2.68535	3.6470149999999997	4.60868	2.85494e-4	1.35506e-5	0.0150568	0.00291218
chr5	65929603	65929703	2370874	0	+	0.38	(0.378,0.408]	chr5	228472	24	INTRON	INTRON	ERBIN	ENSG00000112851.15	ENST00000380943.6:ENST00000507490.1:ENST00000416865.6:ENST00000380935.5:ENST00000284037.10:ENST00000380938.6:ENST00000511297.5:ENST00000506030.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	71	2	1.71619	3.647005	5.57782	0.0300647	1.18586e-4	0.129153	0.00930884
chr13	19717077	19717177	5552281	0	-	0.29	(0.28,0.32]	chr13	530696	71	INTRON	INTRON	PSPC1	ENSG00000121390.19	ENST00000471658.5:ENST00000492741.5:ENST00000635562.1:ENST00000338910.9:ENST00000619300.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	64	2	1.94591	3.6467799999999997	5.34765	0.0228482	0.00287138	0.125519	0.0474836
chr16	11839194	11839294	6445765	0	-	0.51	(0.476,0.515]	chr16	620987	1	SS5_PROX	SS5_PROX:INTRON	RSL1D1	ENSG00000171490.13	ENST00000571133.6:ENST00000396503.7:ENST00000573618.5:ENST00000355674.9:ENST00000573029.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	35	2	2.94692	3.6467	4.34648	0.0193566	0.00794331	0.108861	0.0797304
chr2	171951680	171951780	918653	0	+	0.49	(0.476,0.515]	chr2	101189	45	INTRON	INTRON	HAT1	ENSG00000128708.13	ENST00000412731.5:ENST00000264108.5:ENST00000457761.6:ENST00000494601.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	35	2	2.94692	3.6467	4.34648	0.0193566	0.00794331	0.108861	0.0797304
chr9	132915130	132915229	4368566	0	-	0.494949	(0.476,0.515]	chr9	401785	23	INTRON	INTRON	TSC1	ENSG00000165699.15	ENST00000298552.9:ENST00000440111.6:ENST00000545250.5:ENST00000644097.1:ENST00000646625.1:ENST00000642627.1:ENST00000643875.1:ENST00000645901.1:ENST00000642811.1:ENST00000642617.1:ENST00000647279.1:ENST00000643583.1:ENST00000644255.1:ENST00000646391.1:ENST00000643072.1:ENST00000647506.1:ENST00000643362.1:ENST00000642344.1:ENST00000642745.1:ENST00000645150.1:ENST00000642646.1:ENST00000647462.1:ENST00000647078.1:ENST00000644997.1:ENST00000645129.1:ENST00000403810.6:ENST00000642854.1:ENST00000643691.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	35	2	2.94692	3.6467	4.34648	0.0193566	0.00794331	0.108861	0.0797304
chr22	39954723	39954822	7516645	0	+	0.343434	(0.32,0.35]	chr22	768030	64	INTRON	INTRON	GRAP2	ENSG00000100351.17	ENST00000344138.9:ENST00000420971.5:ENST00000478445.1:ENST00000407075.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	41	2	2.23182	3.646605	5.06139	0.068598	0.00179023	0.184298	0.0392749
chr2	177348475	177348575	1276710	0	-	0.32	(0.28,0.32]	chr2	134792	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	NFE2L2:ENSG00000213963	ENSG00000116044.16:ENSG00000213963.6	ENST00000464747.5:ENST00000397057.6:ENST00000456746.5:ENST00000447413.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	1	43	2	2.39347	3.6465449999999997	4.89962	0.0504457	0.00425206	0.156383	0.0595557
chr1	77607752	77607852	492708	0	-	0.52	(0.515,0.57]	chr1	58292	227	INTRON	INTRON	ZZZ3	ENSG00000036549.13	ENST00000370801.8:ENST00000481346.5:ENST00000476275.5:ENST00000370798.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	42	2	2.1885	3.64649	5.10448	0.0202537	0.0010345	0.121364	0.029231300000000002
chr2	62358835	62358934	790917	0	+	0.525253	(0.515,0.57]	chr2	88712	125	INTRON	INTRON	ENSG00000228541	ENSG00000228541.2	ENST00000689590.1:ENST00000687402.1:ENST00000687773.1	lncRNA	lncRNA	lncRNA	lncRNA	2	42	2	2.1885	3.64649	5.10448	0.0202537	0.0010345	0.121364	0.029231300000000002
chr10	97754477	97754576	4505473	0	+	0.373737	(0.35,0.378]	chr10	414823	9	INTRON	INTRON	ZFYVE27	ENSG00000155256.18	ENST00000337540.11:ENST00000370613.7:ENST00000370610.7:ENST00000357540.8:ENST00000393677.8:ENST00000423811.3:ENST00000684270.1:ENST00000359980.5	protein_coding	protein_coding	protein_coding	protein_coding	2	53	2	2.14264	3.6464	5.15016	0.0274795	9.78549e-4	0.123904	0.0287765
chr12	70257287	70257387	5166570	0	+	0.37	(0.35,0.378]	chr12	489374	126	INTRON	INTRON	CNOT2	ENSG00000111596.14	ENST00000547780.5:ENST00000418359.7:ENST00000552319.5:ENST00000550160.5:ENST00000551661.5:ENST00000551132.5:ENST00000553078.5:ENST00000548021.5:ENST00000550641.6:ENST00000229195.8:ENST00000552915.5:ENST00000549443.5:ENST00000548741.5:ENST00000552483.5:ENST00000552422.5:ENST00000551179.1:ENST00000547321.5:ENST00000553020.5:ENST00000548159.5:ENST00000549750.5:ENST00000551043.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	53	2	2.14264	3.6464	5.15016	0.0274795	9.78549e-4	0.123904	0.0287765
chr11	67197540	67197640	4813236	0	+	0.4	(0.378,0.408]	chr11	448134	153	INTRON	INTRON	KDM2A	ENSG00000173120.15	ENST00000529006.7:ENST00000398645.6:ENST00000308783.9	protein_coding	protein_coding	protein_coding	protein_coding	3	57	2	2.22859	3.646355	5.06412	0.00763308	0.0030522	0.0777238	0.0493883
chr2	47886828	47886928	1115927	0	-	0.39	(0.378,0.408]	chr2	119690	206	INTRON	INTRON	FBXO11	ENSG00000138081.22	ENST00000684712.1:ENST00000682451.1:ENST00000403359.8:ENST00000402508.5:ENST00000683894.1:ENST00000681999.1:ENST00000682975.1:ENST00000684085.1:ENST00000492225.5:ENST00000424163.2:ENST00000480038.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	57	2	2.22859	3.646355	5.06412	0.00763308	0.0030522	0.0777238	0.0493883
chr7	157141835	157141935	3453968	0	+	0.49	(0.476,0.515]	chr7	322895	21	INTRON	INTRON	UBE3C	ENSG00000009335.18	ENST00000611269.4:ENST00000348165.10:ENST00000389103.4:ENST00000430750.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	48	2	1.8388	3.64635	5.4539	0.0564473	5.16081e-4	0.184423	0.0208667
chr10	68049845	68049945	4637691	0	-	0.5	(0.476,0.515]	chr10	426436	49	INTRON	INTRON	HERC4	ENSG00000148634.16	ENST00000373700.9:ENST00000412272.6:ENST00000395198.7:ENST00000473533.6:ENST00000427635.6:ENST00000513996.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	46	2	2.32001	3.64627	4.97253	0.0136217	0.00311573	0.101682	0.0498063
chr10	74084610	74084710	4455379	0	+	0.5	(0.476,0.515]	chr10	411437	7	INTRON	INTRON	VCL	ENSG00000035403.18	ENST00000623461.3:ENST00000372755.7:ENST00000624354.3:ENST00000211998.10:ENST00000478896.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	46	2	2.32001	3.64627	4.97253	0.0136217	0.00311573	0.101682	0.0498063
chr11	3046564	3046662	4892489	0	-	0.612245	(0.57,1]	chr11	458492	39	INTRON	INTRON	CARS1	ENSG00000110619.18	ENST00000397111.9:ENST00000531387.5:ENST00000380525.9:ENST00000278224.13:ENST00000529772.5:ENST00000526890.5:ENST00000439280.6:ENST00000524825.5:ENST00000527330.2:ENST00000465331.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	45	2	2.69093	3.64627	4.60161	0.00142229	2.65452e-4	0.0340865	0.0144243
chr1	226300475	226300573	647770	0	-	0.418367	(0.408,0.44]	chr1	76746	23	INTRON	INTRON	LIN9	ENSG00000183814.16	ENST00000460719.5:ENST00000366808.6:ENST00000328205.9:ENST00000681046.1:ENST00000481685.1:ENST00000359525.2	protein_coding	protein_coding	protein_coding	protein_coding	2	46	2	2.33431	3.6462399999999997	4.95817	0.0129219	0.00372419	0.0990564	0.0535094
chr13	30618556	30618652	5462637	0	+	0.416667	(0.408,0.44]	chr13	523387	1	INTRON	INTRON	USPL1	ENSG00000132952.12	ENST00000465952.5:ENST00000255304.9:ENST00000614860.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	46	2	2.33431	3.6462399999999997	4.95817	0.0129219	0.00372419	0.0990564	0.0535094
chr10	28568020	28568120	4414154	0	+	0.42	(0.408,0.44]	chr10	407148	296	INTRON	INTRON	WAC	ENSG00000095787.24	ENST00000680735.1:ENST00000375664.8:ENST00000428935.6:ENST00000651598.1:ENST00000628285.3:ENST00000681112.1:ENST00000679570.1:ENST00000375646.5:ENST00000354911.9:ENST00000347934.8:ENST00000420266.6:ENST00000651885.1:ENST00000651441.1:ENST00000679398.1:ENST00000424454.5:ENST00000442148.6:ENST00000448193.5:ENST00000414108.6:ENST00000679428.1:ENST00000439676.5:ENST00000345541.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	35	2	2.96007	3.646225	4.33238	0.0218901	0.00753901	0.11491	0.0773151
chr12	118029470	118029570	5234244	0	+	0.43	(0.408,0.44]	chr12	496551	3	SS3_PROX	SS3_PROX:INTRON	RFC5	ENSG00000111445.14	ENST00000454402.7:ENST00000392542.6:ENST00000543153.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	35	2	2.96007	3.646225	4.33238	0.0218901	0.00753901	0.11491	0.0773151
chr1	224978742	224978842	322859	0	+	0.47	(0.44,0.476]	chr1	37166	42	INTRON	INTRON	DNAH14	ENSG00000185842.16	ENST00000445597.6:ENST00000430092.5:ENST00000400952.7:ENST00000682510.1:ENST00000366849.5:ENST00000439375.6	protein_coding	protein_coding	protein_coding	protein_coding	2	54	2	2.67282	3.64618	4.61954	0.00506805	0.00433875	0.0646039	0.0579868
chr1	15897141	15897241	35159	0	+	0.35	(0.32,0.35]	chr1	4272	201	INTRON	INTRON	SPEN	ENSG00000065526.12	ENST00000673875.1:ENST00000375759.8:ENST00000438066.1:ENST00000442985.1	protein_coding	protein_coding	protein_coding	protein_coding	1	41	2	2.57263	3.646165	4.7197	0.0312297	0.00568521	0.13151	0.0678837
chr5	95729878	95729977	2431221	0	+	0.323232	(0.32,0.35]	chr5	233627	118	INTRON	INTRON	RHOBTB3	ENSG00000164292.13	ENST00000510226.5:ENST00000515852.5:ENST00000504949.1	protein_coding	retained_intron	protein_coding	retained_intron:processed_transcript	1	41	2	2.57263	3.646165	4.7197	0.0312297	0.00568521	0.13151	0.0678837
chr19	16653679	16653767	7150723	0	-	0.488636	(0.476,0.515]	chr19	722455	1	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	SMIM7	ENSG00000214046.9	ENST00000465250.6:ENST00000481671.6:ENST00000594662.5:ENST00000597781.5:ENST00000598278.5:ENST00000593409.5:ENST00000487803.5:ENST00000627144.2:ENST00000487416.7:ENST00000593404.5:ENST00000597711.5:ENST00000599310.5:ENST00000397349.6:ENST00000602194.5:ENST00000600740.5:ENST00000461488.5:ENST00000463051.5:ENST00000358726.6:ENST00000594507.5:ENST00000461364.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	46	2	2.19809	3.64616	5.09423	0.020317	0.00204588	0.121522	0.04086
chr3	186972969	186973068	1586601	0	+	0.414141	(0.408,0.44]	chr3	164332	87	INTRON	INTRON	ST6GAL1	ENSG00000073849.16	ENST00000676786.1:ENST00000169298.8:ENST00000457772.6:ENST00000455441.5:ENST00000427315.5:ENST00000677292.1:ENST00000458216.5:ENST00000430309.5:ENST00000417392.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	46	2	2.21238	3.6461050000000004	5.07983	0.0193525	0.00247652	0.119831	0.0446195
chr6	98871009	98871108	3164807	0	-	0.424242	(0.408,0.44]	chr6	295170	26	UTR3	UTR3:EXON_MRNA	FBXL4	ENSG00000112234.9	ENST00000369244.7	protein_coding	protein_coding	protein_coding	protein_coding	5	139	2	2.95595	3.646095	4.33624	8.31527e-5	2.20513e-5	0.00767539	0.00382415
chr14	101968037	101968137	5820255	0	+	0.36	(0.35,0.378]	chr14	551975	27	INTRON	INTRON	DYNC1H1	ENSG00000197102.14	ENST00000360184.10:ENST00000684561.1:ENST00000680313.1:ENST00000679720.1:ENST00000680715.1:ENST00000681283.1:ENST00000681822.1:ENST00000679910.1:ENST00000681574.1:ENST00000645039.2:ENST00000645149.2:ENST00000680200.1:ENST00000680120.1:ENST00000644881.2:ENST00000681066.1:ENST00000680423.1:ENST00000681536.1:ENST00000679486.1:ENST00000681010.1:ENST00000679629.1:ENST00000681123.1:ENST00000680874.1:ENST00000680137.1:ENST00000643508.2:ENST00000680808.1:ENST00000681311.1:ENST00000681859.1:ENST00000643684.1:ENST00000643958.2:ENST00000680001.1:ENST00000681668.1:ENST00000645114.2:ENST00000681751.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	135	2	3.0166	3.6460850000000002	4.27557	3.3606e-4	1.87054e-5	0.0170343	0.00330057
chr7	139257888	139257987	3436852	0	+	0.50505	(0.476,0.515]	chr7	320202	55	INTRON	INTRON	UBN2	ENSG00000157741.15	ENST00000486663.5:ENST00000473989.8	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	2.38442	3.6460150000000002	4.90761	0.0417472	0.00386428	0.161736	0.0542786
chr1	28572499	28572598	57751	0	+	0.161616	[0,0.28]	chr1	7499	2	INTRON	INTRON	TRNAU1AP	ENSG00000180098.9	ENST00000373830.4:ENST00000480930.5:ENST00000491577.5:ENST00000484775.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	44	2	2.90797	3.6459200000000003	4.38387	0.0501911	0.0118539	0.156383	0.0962115
chr12	62293778	62293878	5149883	0	+	0.24	[0,0.28]	chr12	487288	2	SS3_PROX	SS3_PROX:INTRON	USP15	ENSG00000135655.16	ENST00000353364.7:ENST00000549523.5:ENST00000550632.5:ENST00000312635.10:ENST00000548524.5:ENST00000280377.10:ENST00000551206.5:ENST00000546718.5:ENST00000537297.2:ENST00000549237.5:ENST00000548836.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	44	2	2.90797	3.6459200000000003	4.38387	0.0501911	0.0118539	0.156383	0.0962115
chr13	50079830	50079930	5594572	0	-	0.28	[0,0.28]	chr13	534723	38	INTRON	INTRON	DLEU2	ENSG00000231607.14	ENST00000621282.4:ENST00000688690.1:ENST00000668305.1:ENST00000425586.5:ENST00000686946.1:ENST00000458725.7:ENST00000692504.1:ENST00000443587.6:ENST00000686700.1:ENST00000691340.1:ENST00000433070.7:ENST00000659339.1:ENST00000662092.1:ENST00000666359.2:ENST00000449579.2:ENST00000421758.6:ENST00000690259.1	lncRNA	lncRNA	lncRNA	lncRNA	1	44	2	2.90797	3.6459200000000003	4.38387	0.0501911	0.0118539	0.156383	0.0962115
chr2	47894707	47894807	1116006	0	-	0.22	[0,0.28]	chr2	119694	61	INTRON	INTRON	FBXO11	ENSG00000138081.22	ENST00000684712.1:ENST00000682451.1:ENST00000403359.8:ENST00000683894.1:ENST00000681999.1:ENST00000682975.1:ENST00000684085.1:ENST00000492225.5:ENST00000424163.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	44	2	2.90797	3.6459200000000003	4.38387	0.0501911	0.0118539	0.156383	0.0962115
chr19	40457398	40457498	7184497	0	-	0.48	(0.476,0.515]	chr19	726748	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	BLVRB	ENSG00000090013.11	ENST00000643519.1:ENST00000263368.9:ENST00000595483.5:ENST00000643596.1:ENST00000601346.5:ENST00000597870.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	37	2	2.23335	3.6459099999999998	5.05847	0.0634557	0.00108081	0.177047	0.0300133
chr3	197083801	197083901	1901334	0	-	0.51	(0.476,0.515]	chr3	190537	23	INTRON	INTRON	DLG1	ENSG00000075711.21	ENST00000667157.1:ENST00000346964.6:ENST00000656428.1:ENST00000663148.1:ENST00000655488.1:ENST00000357674.9:ENST00000671185.1:ENST00000658701.1:ENST00000667104.1:ENST00000661336.1:ENST00000669565.1:ENST00000670455.1:ENST00000656087.1:ENST00000670366.1:ENST00000653583.1:ENST00000653795.1:ENST00000671246.1:ENST00000661453.1:ENST00000665728.1:ENST00000664564.1:ENST00000653331.1:ENST00000660432.1:ENST00000660898.1:ENST00000657381.1:ENST00000659221.1:ENST00000654737.1:ENST00000669332.1:ENST00000659716.1:ENST00000660553.1:ENST00000664991.1:ENST00000419354.5:ENST00000661440.1:ENST00000667971.1:ENST00000670935.1:ENST00000668578.1:ENST00000666007.1:ENST00000661229.1:ENST00000660237.1:ENST00000657098.1:ENST00000661013.1:ENST00000436682.6:ENST00000452595.5:ENST00000662727.1:ENST00000422288.6:ENST00000448528.6:ENST00000443183.5:ENST00000656944.1:ENST00000392382.6:ENST00000450955.5:ENST00000658155.1:ENST00000669714.1:ENST00000654733.1:ENST00000469073.2:ENST00000419227.5:ENST00000392381.7:ENST00000471733.5:ENST00000493937.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	37	2	2.23335	3.6459099999999998	5.05847	0.0634557	0.00108081	0.177047	0.0300133
chr7	32558158	32558258	3303870	0	+	0.5	(0.476,0.515]	chr7	306805	2	SS3_PROX	SS3_PROX:INTRON	AVL9	ENSG00000105778.20	ENST00000318709.9:ENST00000409301.5:ENST00000446718.1	protein_coding	protein_coding	protein_coding	protein_coding	1	37	2	2.23335	3.6459099999999998	5.05847	0.0634557	0.00108081	0.177047	0.0300133
chr9	93457276	93457376	4158101	0	+	0.28	[0,0.28]	chr9	379127	45	INTRON	INTRON	FAM120A	ENSG00000048828.17	ENST00000277165.11:ENST00000375389.7:ENST00000446420.2	protein_coding	protein_coding	protein_coding	protein_coding	1	47	2	2.44242	3.6458649999999997	4.84931	0.0491024	0.00779241	0.155269	0.0787356
chr3	170168224	170168323	1861695	0	-	0.252525	[0,0.28]	chr3	186655	172	INTRON	INTRON	PHC3	ENSG00000173889.16	ENST00000495893.7:ENST00000494943.5:ENST00000467570.5:ENST00000484931.5:ENST00000479467.5:ENST00000466189.5:ENST00000475729.5:ENST00000474275.5:ENST00000472330.5:ENST00000465896.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	58	2	2.28885	3.64574	5.00263	0.0181093	0.013055	0.114853	0.093385
chr10	59791625	59791724	4622721	0	-	0.323232	(0.32,0.35]	chr10	425636	30	UTR3	UTR3:EXON_MRNA	CCDC6	ENSG00000108091.11	ENST00000263102.7	protein_coding	protein_coding	protein_coding	protein_coding	3	61	2	2.10695	3.64555	5.18415	0.0127483	0.00333629	0.0987441	0.0512081
chr17	18106653	18106736	6567800	0	+	0.421687	(0.408,0.44]	chr17	638437	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DRG2	ENSG00000108591.10	ENST00000395726.8:ENST00000225729.8:ENST00000580055.5:ENST00000467099.6:ENST00000583355.1:ENST00000582528.5:ENST00000497744.1:ENST00000482564.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	35	2	2.3975	3.645385	4.89327	0.040266	0.00458906	0.161534	0.0595107
chr17	75288119	75288208	6836899	0	-	0.438202	(0.408,0.44]	chr17	675682	1	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	SLC25A19	ENSG00000125454.12	ENST00000375261.8:ENST00000416858.7:ENST00000320362.7:ENST00000442286.6:ENST00000580994.5:ENST00000583332.5:ENST00000580273.1:ENST00000579207.5:ENST00000580151.5:ENST00000581988.5:ENST00000582778.1:ENST00000584438.1:ENST00000579228.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	35	2	2.3975	3.645385	4.89327	0.040266	0.00458906	0.161534	0.0595107
chr5	62557135	62557235	2364481	0	+	0.41	(0.408,0.44]	chr5	228001	54	INTRON	INTRON	IPO11	ENSG00000086200.17	ENST00000424533.5:ENST00000325324.11:ENST00000409296.7:ENST00000511713.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	35	2	2.3975	3.645385	4.89327	0.040266	0.00458906	0.161534	0.0595107
chr10	35018065	35018165	4600401	0	-	0.48	(0.476,0.515]	chr10	423756	2	SS5_PROX	SS5_PROX:INTRON	CUL2	ENSG00000108094.17	ENST00000626172.3:ENST00000374751.7:ENST00000374748.5:ENST00000374749.8:ENST00000690123.1:ENST00000537177.6:ENST00000374746.6:ENST00000691974.1:ENST00000688571.1:ENST00000690393.1:ENST00000690092.1:ENST00000374754.9:ENST00000688252.1:ENST00000691272.1:ENST00000688390.1:ENST00000687282.1:ENST00000691201.1:ENST00000687194.1:ENST00000691962.1:ENST00000691858.1:ENST00000691263.1:ENST00000688044.1:ENST00000687524.1:ENST00000673636.2:ENST00000692456.1:ENST00000692866.1:ENST00000693739.1:ENST00000686302.1:ENST00000685681.1:ENST00000421317.5:ENST00000684965.1:ENST00000691457.1:ENST00000688541.1:ENST00000689330.1:ENST00000689705.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	37	2	2.7646	3.6452999999999998	4.526	0.0162075	0.00699701	0.101453	0.0754576
chr12	111893957	111894056	5229267	0	+	0.484848	(0.476,0.515]	chr12	495712	10	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	MAPKAPK5	ENSG00000089022.14	ENST00000550735.7:ENST00000547915.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	37	2	2.7646	3.6452999999999998	4.526	0.0162075	0.00699701	0.101453	0.0754576
chr19	2771175	2771274	7116638	0	-	0.515152	(0.476,0.515]	chr19	715508	5	INTRON	INTRON	SGTA	ENSG00000104969.11	ENST00000221566.7:ENST00000678109.1:ENST00000676984.1:ENST00000677513.1:ENST00000676943.1:ENST00000677731.1:ENST00000679138.1:ENST00000677562.1:ENST00000678595.1:ENST00000677754.1:ENST00000677149.1:ENST00000678577.1:ENST00000589251.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	37	2	2.7646	3.6452999999999998	4.526	0.0162075	0.00699701	0.101453	0.0754576
chr1	200405433	200405532	616974	0	-	0.353535	(0.35,0.378]	chr1	72920	6	UTR3	UTR3:EXON_MRNA	ZNF281	ENSG00000162702.8	ENST00000294740.3:ENST00000367353.2	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	2.72498	3.6452400000000003	4.5655	0.0168499	0.0155464	0.11068	0.100909
chr10	63355172	63355272	4634282	0	-	0.37	(0.35,0.378]	chr10	426226	861	INTRON	INTRON	JMJD1C	ENSG00000171988.20	ENST00000399262.7:ENST00000633035.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	36	2	2.72498	3.6452400000000003	4.5655	0.0168499	0.0155464	0.11068	0.100909
chr8	140770415	140770515	4077742	0	-	0.37	(0.35,0.378]	chr8	370458	3	SS5_PROX	SS5_PROX:INTRON	PTK2	ENSG00000169398.20	ENST00000696786.1:ENST00000522684.5:ENST00000395218.3:ENST00000519654.5:ENST00000521059.5:ENST00000517887.5:ENST00000519993.5:ENST00000340930.7:ENST00000523539.5:ENST00000519419.5:ENST00000524202.5:ENST00000521986.5:ENST00000521250.5:ENST00000521981.5:ENST00000523746.5:ENST00000523474.5:ENST00000521172.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	36	2	2.72498	3.6452400000000003	4.5655	0.0168499	0.0155464	0.11068	0.100909
chr3	128494815	128494914	1496787	0	+	0.434343	(0.408,0.44]	chr3	156310	44	INTRON	INTRON	GATA2-AS1	ENSG00000244300.3	ENST00000464242.1:ENST00000468377.1:ENST00000669945.1	lncRNA	lncRNA	lncRNA	lncRNA	7	225	2	3.48062	3.645235	3.80985	2.88866e-6	2.66642e-6	0.00119813	0.00104918
chr12	50563408	50563508	5137734	0	+	0.44	(0.408,0.44]	chr12	484468	578	INTRON	INTRON	DIP2B	ENSG00000066084.13	ENST00000301180.10:ENST00000549620.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	37	2	2.58624	3.6451700000000002	4.7041	0.0273686	0.00381677	0.123904	0.0562562
chr16	23642770	23642862	6323248	0	+	0.434783	(0.408,0.44]	chr16	605582	3	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	DCTN5	ENSG00000166847.10	ENST00000300087.7:ENST00000563998.5:ENST00000566053.5:ENST00000568589.5:ENST00000563188.5:ENST00000568272.1:ENST00000566298.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	37	2	2.58624	3.6451700000000002	4.7041	0.0273686	0.00381677	0.123904	0.0562562
chr2	235608018	235608118	1042477	0	+	0.55	(0.515,0.57]	chr2	111222	831	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1:ENST00000402604.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	44	2	1.86007	3.64513	5.43019	0.0526611	2.60422e-4	0.178401	0.0148796
chr14	102552366	102552463	5822495	0	+	0.659794	(0.57,1]	chr14	552479	15	INTRON	INTRON	LINC02323	ENSG00000259230.1	ENST00000559946.1	lncRNA	lncRNA	lncRNA	lncRNA	1	23	2	2.91889	3.645125	4.37136	0.00719009	0.00345135	0.0756118	0.0517761
chr16	1680138	1680237	6275221	0	+	0.606061	(0.57,1]	chr16	599497	14	INTRON	INTRON	JPT2	ENSG00000206053.13	ENST00000569256.5:ENST00000567717.1:ENST00000562684.5:ENST00000248098.8:ENST00000561516.5:ENST00000382711.9:ENST00000566742.5:ENST00000569765.5:ENST00000566925.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	23	2	2.91889	3.645125	4.37136	0.00719009	0.00345135	0.0756118	0.0517761
chr19	1847103	1847202	7113818	0	-	0.59596	(0.57,1]	chr19	714891	159	INTRON	INTRON	REXO1	ENSG00000079313.15	ENST00000170168.9:ENST00000587524.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	23	2	2.91889	3.645125	4.37136	0.00719009	0.00345135	0.0756118	0.0517761
chr3	14474810	14474910	1370135	0	+	0.62	(0.57,1]	chr3	144379	21	INTRON	INTRON	SLC6A6	ENSG00000131389.18	ENST00000613060.4:ENST00000618278.4:ENST00000610642.4:ENST00000649500.1:ENST00000622186.5:ENST00000452151.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	23	2	2.91889	3.645125	4.37136	0.00719009	0.00345135	0.0756118	0.0517761
chr12	49493366	49493463	5134221	0	+	0.360825	(0.35,0.378]	chr12	484027	23	INTRON	INTRON	SPATS2	ENSG00000123352.18	ENST00000550997.5:ENST00000549412.5:ENST00000552918.6:ENST00000553127.5:ENST00000321898.10:ENST00000549045.5:ENST00000552557.5:ENST00000552655.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	37	2	2.99173	3.64506	4.29839	0.0294717	0.00713365	0.128055	0.0756118
chr19	47168223	47168322	7084256	0	+	0.353535	(0.35,0.378]	chr19	708792	107	INTRON	INTRON	SAE1	ENSG00000142230.13	ENST00000594144.5:ENST00000413379.7:ENST00000600706.5:ENST00000270225.12:ENST00000598840.5:ENST00000414294.6:ENST00000660039.1:ENST00000664120.1:ENST00000596995.1:ENST00000392776.3:ENST00000659110.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	37	2	2.99173	3.64506	4.29839	0.0294717	0.00713365	0.128055	0.0756118
chr1	180703999	180704099	270316	0	+	0.29	(0.28,0.32]	chr1	31620	212	INTRON	INTRON	XPR1	ENSG00000143324.14	ENST00000367590.9:ENST00000367589.3	protein_coding	protein_coding	protein_coding	protein_coding	2	53	2	2.13651	3.6450449999999996	5.15358	0.0265696	0.0052282	0.134088	0.0633615
chr16	89396161	89396261	6542649	0	-	0.47	(0.44,0.476]	chr16	634249	1	SS3_PROX	SS3_PROX:INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000647238.1:ENST00000644045.1:ENST00000643147.1:ENST00000644139.1:ENST00000568512.6:ENST00000566973.1:ENST00000562211.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	46	2	2.39003	3.645015	4.9	0.0106488	0.00423315	0.0915714	0.0572185
chr8	105501411	105501511	3839076	0	+	0.45	(0.44,0.476]	chr8	354063	498	INTRON	INTRON	ZFPM2	ENSG00000169946.14	ENST00000407775.7:ENST00000520492.5:ENST00000520027.5:ENST00000524235.5:ENST00000511341.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	46	2	2.39003	3.645015	4.9	0.0106488	0.00423315	0.0915714	0.0572185
chr1	193039651	193039750	612671	0	-	0.363636	(0.35,0.378]	chr1	72474	96	INTRON	INTRON	UCHL5	ENSG00000116750.14	ENST00000367455.8:ENST00000367454.6:ENST00000367450.7:ENST00000367451.8:ENST00000367449.5:ENST00000367448.5:ENST00000421683.1	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	2.57049	3.64501	4.71953	0.0262669	0.0103314	0.133676	0.0850389
chr12	758710	758810	5056238	0	+	0.37	(0.35,0.378]	chr12	477423	40	INTRON	INTRON	WNK1	ENSG00000060237.19	ENST00000315939.11:ENST00000340908.9:ENST00000535572.5:ENST00000537687.5:ENST00000530271.6:ENST00000447667.2	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	2.57049	3.64501	4.71953	0.0262669	0.0103314	0.133676	0.0850389
chr13	110880312	110880412	5650285	0	-	0.37	(0.35,0.378]	chr13	538331	2	SS3_PROX	SS3_PROX:INTRON	ANKRD10	ENSG00000088448.14	ENST00000267339.6:ENST00000485844.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	36	2	2.57049	3.64501	4.71953	0.0262669	0.0103314	0.133676	0.0850389
chr2	19899930	19900030	1074679	0	-	0.37	(0.35,0.378]	chr2	114709	15	INTRON	INTRON	TTC32	ENSG00000183891.6	ENST00000333610.4:ENST00000402414.1:ENST00000431392.1	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	2.57049	3.64501	4.71953	0.0262669	0.0103314	0.133676	0.0850389
chr6	53093007	53093098	2877837	0	+	0.373626	(0.35,0.378]	chr6	273160	3	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	FBXO9	ENSG00000112146.17	ENST00000370939.7:ENST00000323557.12:ENST00000244426.10:ENST00000480463.6:ENST00000474457.1:ENST00000484436.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	36	2	2.57049	3.64501	4.71953	0.0262669	0.0103314	0.133676	0.0850389
chr7	156732586	156732685	3686391	0	-	0.363636	(0.35,0.378]	chr7	342011	35	INTRON	INTRON	LMBR1	ENSG00000105983.23	ENST00000353442.10:ENST00000448926.5:ENST00000415428.5:ENST00000454132.5:ENST00000434503.5:ENST00000461603.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	36	2	2.57049	3.64501	4.71953	0.0262669	0.0103314	0.133676	0.0850389
chr8	144238155	144238255	3881237	0	+	0.37	(0.35,0.378]	chr8	356723	146	INTRON	INTRON	MROH1	ENSG00000179832.18	ENST00000326134.10:ENST00000532255.5:ENST00000534366.5:ENST00000527552.5:ENST00000528919.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	36	2	2.57049	3.64501	4.71953	0.0262669	0.0103314	0.133676	0.0850389
chr8	41706741	41706837	3938138	0	-	0.583333	(0.57,1]	chr8	361037	1	INTRON	INTRON	ANK1	ENSG00000029534.21	ENST00000347528.8:ENST00000265709.13:ENST00000289734.13	protein_coding	protein_coding	protein_coding	protein_coding	1	23	2	2.79889	3.64498	4.49107	0.0110274	0.00220544	0.0927187	0.0417893
chr16	23919938	23920038	6324600	0	+	0.38	(0.378,0.408]	chr16	605701	262	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000498739.1	protein_coding	protein_coding	protein_coding	protein_coding	2	79	2	3.32016	3.644965	3.96977	0.00268328	9.19167e-5	0.0464781	0.00801007
chr22	38700084	38700181	7588943	0	-	0.381443	(0.378,0.408]	chr22	776904	2	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	JOSD1	ENSG00000100221.11	ENST00000683374.1:ENST00000216039.9:ENST00000427389.5:ENST00000412832.1:ENST00000417712.1:ENST00000456626.1:ENST00000462610.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	65	2	1.6165	3.64494	5.67338	0.0374185	3.05145e-4	0.155878	0.0161236
chr1	173864979	173865077	587062	0	-	0.510204	(0.476,0.515]	chr1	70637	12	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GAS5	ENSG00000234741.9	ENST00000651080.1:ENST00000687189.1:ENST00000689238.1:ENST00000687549.1:ENST00000687435.1:ENST00000687987.1:ENST00000686995.1:ENST00000689958.1:ENST00000687063.1:ENST00000689895.1:ENST00000690228.1:ENST00000688573.1:ENST00000412059.6:ENST00000685107.1:ENST00000449289.6:ENST00000691213.1:ENST00000436285.6:ENST00000436656.6:ENST00000422008.6:ENST00000691137.1:ENST00000450589.6:ENST00000448718.6:ENST00000693348.1:ENST00000690349.1:ENST00000690761.1:ENST00000687022.1:ENST00000686878.1:ENST00000430245.5:ENST00000422183.6:ENST00000442067.6:ENST00000693450.1:ENST00000690448.1:ENST00000416952.6:ENST00000688895.1:ENST00000687710.1:ENST00000693030.1:ENST00000692671.1:ENST00000688557.1:ENST00000456812.7:ENST00000431268.5:ENST00000455838.6:ENST00000449589.6:ENST00000444470.6:ENST00000693469.1:ENST00000685758.1:ENST00000458220.2:ENST00000687409.1:ENST00000688952.1:ENST00000689860.1:ENST00000686918.1:ENST00000691056.1:ENST00000689469.1:ENST00000685039.1:ENST00000414075.6:ENST00000692994.1:ENST00000691982.1:ENST00000690172.1:ENST00000686460.1:ENST00000691712.1:ENST00000685159.1:ENST00000685008.1:ENST00000452197.5:ENST00000454068.5:ENST00000650796.1:ENST00000451607.5:ENST00000693521.1:ENST00000690941.1:ENST00000693459.1:ENST00000686231.1:ENST00000684949.1:ENST00000425771.6	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	11	340	2	3.47321	3.644825	3.81644	5.9118e-7	2.34192e-7	4.50891e-4	2.3186e-4
chr7	123722121	123722221	3632392	0	-	0.35	(0.32,0.35]	chr7	337581	125	INTRON	INTRON	WASL	ENSG00000106299.8	ENST00000223023.5	protein_coding	protein_coding	protein_coding	protein_coding	2	53	2	2.67068	3.644785	4.61889	0.0166646	0.00406276	0.102621	0.0578984
chr2	47884037	47884137	1115899	0	-	0.46	(0.44,0.476]	chr2	119690	178	INTRON	INTRON	FBXO11	ENSG00000138081.22	ENST00000684712.1:ENST00000682451.1:ENST00000403359.8:ENST00000402508.5:ENST00000683894.1:ENST00000681999.1:ENST00000682975.1:ENST00000684085.1:ENST00000492225.5:ENST00000424163.2:ENST00000480038.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	46	2	2.14573	3.644755	5.14378	0.0238593	0.00184943	0.129075	0.0388609
chr3	138827107	138827207	1831424	0	-	0.39	(0.378,0.408]	chr3	184062	302	INTRON	INTRON	PIK3CB	ENSG00000051382.9	ENST00000674063.1:ENST00000477593.5:ENST00000462898.5:ENST00000483968.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	51	2	2.00398	3.644595	5.28521	0.0393906	4.52877e-4	0.143072	0.0192381
chr14	96868792	96868892	5811594	0	+	0.47	(0.44,0.476]	chr14	551089	40	EXON_MRNA	EXON_MRNA:INTRON	VRK1	ENSG00000100749.9	ENST00000553683.2:ENST00000680538.1:ENST00000681195.1:ENST00000681524.1:ENST00000680084.1:ENST00000679533.1:ENST00000681598.1:ENST00000679727.1:ENST00000679758.1:ENST00000679977.1:ENST00000680387.1:ENST00000680335.1:ENST00000680683.1:ENST00000681474.1:ENST00000216639.8:ENST00000681363.1:ENST00000681538.1:ENST00000680922.1:ENST00000679903.1:ENST00000681101.1:ENST00000681419.1:ENST00000679941.1:ENST00000680849.1:ENST00000679770.1:ENST00000681493.1:ENST00000681778.1:ENST00000680993.1:ENST00000681355.1:ENST00000681695.1:ENST00000681344.1:ENST00000680007.1:ENST00000679918.1:ENST00000679816.1:ENST00000680756.1:ENST00000681249.1:ENST00000680526.1:ENST00000679365.1:ENST00000680851.1:ENST00000679506.1:ENST00000679650.1:ENST00000679462.1:ENST00000680724.1:ENST00000681061.1:ENST00000681677.1:ENST00000679843.1:ENST00000555067.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	50	2	2.29126	3.64454	4.99782	0.0165638	0.0013223	0.102621	0.0333932
chr16	8641622	8641700	6284462	0	+	0.384615	(0.378,0.408]	chr16	601764	1	EXON_LNCRNA	EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	METTL22	ENSG00000067365.15	ENST00000163678.11:ENST00000381920.8:ENST00000561758.5:ENST00000568967.5:ENST00000572956.5:ENST00000561993.5:ENST00000563501.1:ENST00000565866.5:ENST00000562151.2:ENST00000564107.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	51	2	2.05897	3.64454	5.23011	0.0339294	5.72873e-4	0.134508	0.0217398
chr17	40154072	40154172	6609264	0	+	0.32	(0.28,0.32]	chr17	643675	121	INTRON	INTRON	CASC3	ENSG00000108349.17	ENST00000418132.7:ENST00000264645.12:ENST00000581849.1:ENST00000584997.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	58	2	2.77917	3.6444900000000002	4.50981	0.0275554	0.00285651	0.123904	0.0494641
chr2	87493705	87493805	826310	0	+	0.47	(0.44,0.476]	chr2	92436	57	INTRON	INTRON	CYTOR:ENSG00000284879	ENSG00000222041.12:ENSG00000284879.1	ENST00000642796.1:ENST00000643589.1:ENST00000642451.1:ENST00000646386.1:ENST00000644478.1:ENST00000409139.6:ENST00000331944.10:ENST00000644125.1:ENST00000643743.1:ENST00000644577.1:ENST00000643276.1:ENST00000409898.2:ENST00000419680.6:ENST00000644976.1:ENST00000643070.1:ENST00000646855.1:ENST00000414584.1:ENST00000455131.5:ENST00000646636.1:ENST00000642293.1:ENST00000423846.5:ENST00000644040.1:ENST00000645138.1:ENST00000437561.2:ENST00000629257.1:ENST00000645729.1	lncRNA	lncRNA	lncRNA	lncRNA	5	78	2	1.7899	3.64434	5.49878	0.0158205	1.52058e-4	0.101453	0.0106137
chr1	29048431	29048531	60308	0	+	0.55	(0.515,0.57]	chr1	7705	71	INTRON	INTRON	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000647918.1:ENST00000646800.1:ENST00000644342.1:ENST00000646189.1:ENST00000482464.6:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000646260.1:ENST00000373798.5:ENST00000644600.1:ENST00000649674.1:ENST00000643173.1:ENST00000343067.9:ENST00000644780.1:ENST00000650265.1:ENST00000648181.1:ENST00000643604.1:ENST00000648891.1:ENST00000373797.2:ENST00000349460.9:ENST00000645184.1:ENST00000645111.1:ENST00000643302.1:ENST00000645999.1:ENST00000642643.1:ENST00000636666.1:ENST00000644848.1:ENST00000644470.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	93	2	3.40388	3.644085	3.88429	0.00142538	3.95865e-6	0.0340865	0.00131614
chr3	9395185	9395285	1611698	0	-	0.46	(0.44,0.476]	chr3	166266	13	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	THUMPD3-AS1	ENSG00000206573.10	ENST00000468186.5:ENST00000661342.1:ENST00000519043.5:ENST00000657509.1:ENST00000685076.1:ENST00000687342.1:ENST00000685952.1:ENST00000521609.5:ENST00000520629.5:ENST00000654392.1:ENST00000522525.6:ENST00000664441.2:ENST00000469846.3:ENST00000481221.7:ENST00000661714.1:ENST00000665983.1:ENST00000660363.1:ENST00000667458.1:ENST00000520447.1:ENST00000524210.2:ENST00000664273.1:ENST00000521267.5:ENST00000467069.6:ENST00000520396.1:ENST00000494680.6:ENST00000518437.3:ENST00000689821.1:ENST00000522221.2:ENST00000489616.1:ENST00000521708.1:ENST00000480904.2:ENST00000498199.1	lncRNA	lncRNA	lncRNA	lncRNA	2	51	2	2.42996	3.6440650000000003	4.85817	0.0104804	0.00223254	0.0855777	0.0435144
chr17	57302160	57302260	6633209	0	+	0.36	(0.35,0.378]	chr17	648017	70	INTRON	INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000581776.5:ENST00000674961.1:ENST00000582453.5:ENST00000675656.1:ENST00000322684.7:ENST00000579590.5:ENST00000676073.1:ENST00000675822.1:ENST00000442934.6:ENST00000579180.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	37	2	2.30249	3.64405	4.98561	0.0519726	0.00474226	0.176696	0.0600445
chr19	24050723	24050821	7044033	0	+	0.377551	(0.35,0.378]	chr19	702356	9	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	ENSG00000268362:ZNF254	ENSG00000268362.6:ENSG00000213096.11	ENST00000664647.1:ENST00000613065.4:ENST00000656993.1:ENST00000666101.1:ENST00000653003.1:ENST00000666488.1:ENST00000594934.6:ENST00000654353.1:ENST00000662140.1:ENST00000668060.1:ENST00000660137.1:ENST00000669127.1:ENST00000652968.1:ENST00000670905.1:ENST00000658858.1:ENST00000654594.1:ENST00000654372.1:ENST00000652837.1:ENST00000654611.1:ENST00000597683.1:ENST00000671141.1:ENST00000653308.1:ENST00000659757.1:ENST00000661386.1:ENST00000668656.1:ENST00000663903.1:ENST00000668169.1:ENST00000663458.1:ENST00000662903.1:ENST00000665638.1:ENST00000670058.1:ENST00000668701.1:ENST00000655664.1:ENST00000666861.1:ENST00000664627.1:ENST00000661650.1:ENST00000667700.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	1	37	2	2.30249	3.64405	4.98561	0.0519726	0.00474226	0.176696	0.0600445
chr18	36136377	36136462	6891481	0	+	0.352941	(0.35,0.378]	chr18	682963	1	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	ELP2	ENSG00000134759.14	ENST00000543127.5:ENST00000544267.5:ENST00000351393.10:ENST00000541190.5:ENST00000545632.5:ENST00000442325.6:ENST00000358232.11:ENST00000423854.6:ENST00000539560.5:ENST00000535488.5:ENST00000540135.5:ENST00000542430.5:ENST00000350494.10:ENST00000542824.5:ENST00000540799.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	74	2	1.71241	3.644025	5.57564	0.019274	5.93654e-4	0.119831	0.0225024
chr1	51454935	51455035	453703	0	-	0.4	(0.378,0.408]	chr1	54395	64	INTRON	INTRON	EPS15	ENSG00000085832.17	ENST00000371733.8:ENST00000371730.6	protein_coding	protein_coding	protein_coding	protein_coding	2	47	2	2.41037	3.6439950000000003	4.87762	0.0100185	0.00553849	0.0880217	0.0648867
chr17	46124736	46124836	6784183	0	-	0.39	(0.378,0.408]	chr17	669216	35	INTRON	INTRON	KANSL1	ENSG00000120071.15	ENST00000574590.6:ENST00000572904.6:ENST00000432791.7:ENST00000575318.6:ENST00000638275.1:ENST00000262419.10:ENST00000648792.1:ENST00000639531.1:ENST00000639150.1:ENST00000639853.1:ENST00000571698.2:ENST00000639375.1:ENST00000638269.1:ENST00000576248.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	47	2	2.41037	3.6439950000000003	4.87762	0.0100185	0.00553849	0.0880217	0.0648867
chr2	222917367	222917464	1021783	0	+	0.402062	(0.378,0.408]	chr2	109297	10	EXON_MRNA	EXON_MRNA:INTRON	ACSL3	ENSG00000123983.15	ENST00000392066.7:ENST00000407441.5:ENST00000680251.1:ENST00000679541.1:ENST00000681906.1:ENST00000679545.1:ENST00000679932.1:ENST00000680100.1:ENST00000680475.1:ENST00000680525.1:ENST00000680420.1:ENST00000681326.1:ENST00000681292.1:ENST00000681017.1:ENST00000680382.1:ENST00000535678.2:ENST00000680395.1:ENST00000680736.1:ENST00000680147.1:ENST00000357430.8:ENST00000681009.1:ENST00000679514.1:ENST00000681697.1:ENST00000680921.1:ENST00000681383.1:ENST00000679558.1:ENST00000680684.1:ENST00000680424.1:ENST00000540115.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	47	2	2.41037	3.6439950000000003	4.87762	0.0100185	0.00553849	0.0880217	0.0648867
chr3	186790806	186790906	1889529	0	-	0.38	(0.378,0.408]	chr3	189005	4	SS3_PROX	SS3_PROX:INTRON	RFC4	ENSG00000163918.12	ENST00000433496.5:ENST00000479307.5:ENST00000392481.6:ENST00000296273.7:ENST00000417876.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	47	2	2.41037	3.6439950000000003	4.87762	0.0100185	0.00553849	0.0880217	0.0648867
chr1	120798548	120798647	204606	0	+	0.373737	(0.35,0.378]	chr1	22554	47	INTRON	INTRON	NBPF26	ENSG00000273136.8	ENST00000620612.5:ENST00000652763.1:ENST00000651062.1	protein_coding	protein_coding	protein_coding	protein_coding	1	39	2	2.32443	3.643865	4.9633	0.0544216	0.00198929	0.164972	0.0411469
chr21	39192747	39192846	7464286	0	-	0.363636	(0.35,0.378]	chr21	760356	55	UTR3	UTR3:EXON_MRNA:INTRON	BRWD1	ENSG00000185658.14	ENST00000333229.6:ENST00000342449.8:ENST00000446924.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	39	2	2.32443	3.643865	4.9633	0.0544216	0.00198929	0.164972	0.0411469
chr12	24867636	24867736	5297090	0	-	0.38	(0.378,0.408]	chr12	503853	173	INTRON	INTRON	BCAT1	ENSG00000060982.15	ENST00000261192.12:ENST00000538118.5:ENST00000342945.9:ENST00000539282.5:ENST00000539780.5:ENST00000544418.1:ENST00000612790.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:processed_transcript	1	35	2	2.78705	3.643805	4.50056	0.015974	0.0135539	0.101453	0.101363
chr19	34445321	34445421	7053296	0	+	0.38	(0.378,0.408]	chr19	703530	2	SS5_PROX	SS5_PROX:INTRON	UBA2	ENSG00000126261.13	ENST00000586313.1:ENST00000590048.6:ENST00000246548.9:ENST00000439527.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	35	2	2.78705	3.643805	4.50056	0.015974	0.0135539	0.101453	0.101363
chr19	47196333	47196433	7084540	0	+	0.29	(0.28,0.32]	chr19	708804	157	INTRON	INTRON	SAE1	ENSG00000142230.13	ENST00000413379.7:ENST00000270225.12:ENST00000598840.5:ENST00000414294.6:ENST00000660039.1:ENST00000664120.1:ENST00000596995.1:ENST00000392776.3:ENST00000659110.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	43	2	2.2609	3.6437799999999996	5.02666	0.0671429	0.0027935	0.183051	0.0488769
chr4	55960463	55960555	1961849	0	+	0.315217	(0.28,0.32]	chr4	196746	8	UTR3	UTR3:EXON_MRNA:INTRON	CEP135	ENSG00000174799.11	ENST00000422247.6:ENST00000257287.5:ENST00000515081.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	43	2	2.2609	3.6437799999999996	5.02666	0.0671429	0.0027935	0.183051	0.0488769
chrX	119539134	119539232	7872661	0	-	0.306122	(0.28,0.32]	chrX	801720	11	UTR3	UTR3:EXON_MRNA	STEEP1	ENSG00000018610.15	ENST00000644802.2:ENST00000320339.8	protein_coding	protein_coding	protein_coding	protein_coding	1	43	2	2.2609	3.6437799999999996	5.02666	0.0671429	0.0027935	0.183051	0.0488769
chr22	29290122	29290219	7496287	0	+	0.474227	(0.44,0.476]	chr22	764836	12	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	EWSR1	ENSG00000182944.18	ENST00000629659.2:ENST00000332050.10:ENST00000397938.7:ENST00000406548.5:ENST00000331029.11:ENST00000483415.5:ENST00000414183.6:ENST00000333395.10:ENST00000332035.10:ENST00000479135.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	63	2	1.7965	3.643735	5.49097	0.0205549	4.8612e-4	0.122348	0.0203841
chr1	212782626	212782726	634690	0	-	0.29	(0.28,0.32]	chr1	74960	2	SS3_PROX	SS3_PROX:INTRON	NSL1	ENSG00000117697.15	ENST00000366977.8:ENST00000366978.5:ENST00000366976.3:ENST00000626725.1:ENST00000473995.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	40	2	2.86113	3.6437150000000003	4.4263	0.0330296	0.0122675	0.133816	0.0969406
chr3	178808719	178808819	1875589	0	-	0.32	(0.28,0.32]	chr3	187506	64	INTRON	INTRON	KCNMB2-AS1	ENSG00000237978.6	ENST00000437488.5:ENST00000668466.1:ENST00000432385.5:ENST00000451742.5:ENST00000425330.1	lncRNA	lncRNA	lncRNA	lncRNA	1	40	2	2.86113	3.6437150000000003	4.4263	0.0330296	0.0122675	0.133816	0.0969406
chr1	39856296	39856392	427997	0	-	0.40625	(0.378,0.408]	chr1	52013	19	INTRON	INTRON	TRIT1	ENSG00000043514.17	ENST00000316891.10:ENST00000648678.1:ENST00000537440.5:ENST00000372818.5:ENST00000462797.5:ENST00000441669.6:ENST00000495175.6:ENST00000491865.5:ENST00000541099.5:ENST00000492612.6:ENST00000489945.5:ENST00000486825.6:ENST00000469476.2:ENST00000462243.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	47	2	2.11103	3.64365	5.17627	0.0266911	0.00208234	0.134419	0.0411801
chr17	8554915	8555014	6721279	0	-	0.363636	(0.35,0.378]	chr17	659638	5	INTRON	INTRON	MYH10	ENSG00000133026.14	ENST00000379980.8:ENST00000269243.8:ENST00000688902.1:ENST00000684843.1:ENST00000687178.1:ENST00000692526.1:ENST00000688497.1:ENST00000685418.1:ENST00000693441.1:ENST00000686654.1:ENST00000360416.8:ENST00000691566.1:ENST00000686521.1:ENST00000692077.1:ENST00000686956.1:ENST00000465458.2:ENST00000690895.1:ENST00000690548.1:ENST00000692894.1:ENST00000687661.1:ENST00000693704.1:ENST00000472728.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	39	2	2.53856	3.64358	4.7486	0.0326077	0.00418965	0.133687	0.0591344
chr6	140848715	140848812	3240633	0	-	0.360825	(0.35,0.378]	chr6	301043	25	EXON_LNCRNA	EXON_LNCRNA:INTRON	ENSG00000234147	ENSG00000234147.3	ENST00000650553.2:ENST00000692940.1:ENST00000683641.1:ENST00000682196.1:ENST00000684320.1:ENST00000683889.1:ENST00000683062.1:ENST00000682608.1:ENST00000455011.2:ENST00000682812.1:ENST00000683340.1:ENST00000683841.1:ENST00000683589.1:ENST00000684268.1:ENST00000683369.1:ENST00000683951.1:ENST00000683480.1:ENST00000683183.1	lncRNA	lncRNA	lncRNA	lncRNA	1	39	2	2.53856	3.64358	4.7486	0.0326077	0.00418965	0.133687	0.0591344
chr7	16660418	16660517	3286638	0	+	0.373737	(0.35,0.378]	chr7	305237	138	INTRON	INTRON	BZW2	ENSG00000136261.16	ENST00000415365.5:ENST00000630952.2:ENST00000433922.6:ENST00000437745.5:ENST00000432311.5:ENST00000436868.5:ENST00000258761.8:ENST00000405202.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	39	2	2.53856	3.64358	4.7486	0.0326077	0.00418965	0.133687	0.0591344
chr7	24832495	24832594	3504329	0	-	0.353535	(0.35,0.378]	chr7	327027	12	INTRON	INTRON	OSBPL3	ENSG00000070882.13	ENST00000313367.7:ENST00000409863.5:ENST00000396431.5:ENST00000409452.5:ENST00000409759.5:ENST00000409555.5:ENST00000396429.5:ENST00000409069.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	39	2	2.53856	3.64358	4.7486	0.0326077	0.00418965	0.133687	0.0591344
chr7	127700197	127700290	3402882	0	+	0.354839	(0.35,0.378]	chr7	318094	9	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000468621.5:ENST00000483503.5:ENST00000492772.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	39	2	2.53856	3.64358	4.7486	0.0326077	0.00418965	0.133687	0.0591344
chr11	76877451	76877551	4836938	0	+	0.32	(0.28,0.32]	chr11	451195	88	INTRON	INTRON	ACER3	ENSG00000078124.13	ENST00000679754.1:ENST00000534206.5:ENST00000679866.1:ENST00000680842.1:ENST00000681257.1:ENST00000681354.1:ENST00000681732.1:ENST00000680583.1:ENST00000532485.6:ENST00000681375.1:ENST00000681004.1:ENST00000525194.5:ENST00000525861.5:ENST00000530182.6:ENST00000531461.5:ENST00000681955.1:ENST00000681411.1:ENST00000679611.1:ENST00000679924.1:ENST00000526597.5:ENST00000681251.1:ENST00000530334.6:ENST00000533873.1:ENST00000531352.5:ENST00000278544.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	43	2	2.45545	3.64355	4.83165	0.0438092	0.00527257	0.14901	0.0656295
chr12	19187828	19187928	5088852	0	+	0.31	(0.28,0.32]	chr12	480740	550	INTRON	INTRON	PLEKHA5	ENSG00000052126.15	ENST00000429027.7:ENST00000540972.5:ENST00000299275.10:ENST00000539256.5:ENST00000538714.5:ENST00000535357.5:ENST00000538034.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	43	2	2.45545	3.64355	4.83165	0.0438092	0.00527257	0.14901	0.0656295
chr9	111461427	111461527	4315063	0	-	0.3	(0.28,0.32]	chr9	396838	95	INTRON	INTRON	ECPAS	ENSG00000136813.15	ENST00000684092.1:ENST00000338205.9:ENST00000259335.8:ENST00000602447.5:ENST00000602978.1	protein_coding	protein_coding	protein_coding	protein_coding	1	43	2	2.45545	3.64355	4.83165	0.0438092	0.00527257	0.14901	0.0656295
chr10	21678068	21678167	4405865	0	+	0.353535	(0.35,0.378]	chr10	406517	38	INTRON	INTRON	MLLT10	ENSG00000078403.17	ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000651298.1:ENST00000377059.7:ENST00000651382.1:ENST00000438473.6:ENST00000420525.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	59	2	2.24196	3.64354	5.04512	0.00744693	0.00393262	0.0772645	0.0548259
chrX	123699034	123699132	7878715	0	-	0.377551	(0.35,0.378]	chrX	802576	9	INTRON	INTRON	THOC2	ENSG00000125676.20	ENST00000245838.13:ENST00000355725.8:ENST00000433883.1:ENST00000419789.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	58	2	1.97646	3.64352	5.31058	0.0193942	0.00160599	0.119831	0.0364977
chr9	125330718	125330806	4198959	0	+	0.409091	(0.408,0.44]	chr9	383226	1	INTRON	INTRON	GAPVD1	ENSG00000165219.23	ENST00000497580.5:ENST00000297933.11:ENST00000470056.5:ENST00000394105.6:ENST00000394083.6:ENST00000495955.5:ENST00000467750.5:ENST00000394104.6:ENST00000312123.13:ENST00000431329.5:ENST00000436712.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	71	2	1.8937	3.64345	5.3932	0.00928733	7.81492e-4	0.0855292	0.0257168
chr10	11961040	11961139	4556953	0	-	0.393939	(0.378,0.408]	chr10	420570	13	INTRON	INTRON	UPF2	ENSG00000151461.20	ENST00000357604.10:ENST00000356352.6:ENST00000397053.6	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	2.54849	3.64344	4.73839	0.0273196	0.00837252	0.136494	0.0774402
chr10	22689923	22690023	4580256	0	-	0.4	(0.378,0.408]	chr10	422040	277	INTRON	INTRON	PIP4K2A	ENSG00000150867.14	ENST00000376573.9:ENST00000545335.5:ENST00000605011.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	35	2	2.54849	3.64344	4.73839	0.0273196	0.00837252	0.136494	0.0774402
chr10	45908957	45909056	4608025	0	-	0.383838	(0.378,0.408]	chr10	424467	82	INTRON	INTRON	PARGP1	ENSG00000239883.9	ENST00000688192.1:ENST00000686367.1:ENST00000693310.1:ENST00000417555.2:ENST00000687844.1:ENST00000687550.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	1	35	2	2.54849	3.64344	4.73839	0.0273196	0.00837252	0.136494	0.0774402
chr10	50315412	50315512	4617591	0	-	0.39	(0.378,0.408]	chr10	425393	36	INTRON	INTRON	SGMS1	ENSG00000198964.14	ENST00000429490.5:ENST00000361781.7:ENST00000602619.1	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	2.54849	3.64344	4.73839	0.0273196	0.00837252	0.136494	0.0774402
chr15	43393881	43393980	6011636	0	+	0.40404	(0.378,0.408]	chr15	572516	72	INTRON	INTRON	TUBGCP4	ENSG00000137822.13	ENST00000564079.6:ENST00000260383.11:ENST00000561691.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	35	2	2.54849	3.64344	4.73839	0.0273196	0.00837252	0.136494	0.0774402
chr15	64625145	64625245	6045736	0	+	0.38	(0.378,0.408]	chr15	575702	17	INTRON	INTRON	ZNF609	ENSG00000180357.10	ENST00000326648.5:ENST00000558680.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	35	2	2.54849	3.64344	4.73839	0.0273196	0.00837252	0.136494	0.0774402
chr16	88933935	88934035	6540865	0	-	0.35	(0.32,0.35]	chr16	634096	316	INTRON	INTRON	CBFA2T3	ENSG00000129993.15	ENST00000268679.9:ENST00000327483.9:ENST00000569464.5:ENST00000569443.5:ENST00000563640.1:ENST00000564416.1:ENST00000570046.1	protein_coding	protein_coding	protein_coding	protein_coding	3	118	2	2.99898	3.6434249999999997	4.28787	0.00148392	2.11436e-5	0.034977	0.00355554
chr2	87492907	87493007	826302	0	+	0.41	(0.408,0.44]	chr2	92436	49	INTRON	INTRON	CYTOR:ENSG00000284879	ENSG00000222041.12:ENSG00000284879.1	ENST00000642796.1:ENST00000643589.1:ENST00000642451.1:ENST00000646386.1:ENST00000644478.1:ENST00000409139.6:ENST00000331944.10:ENST00000644125.1:ENST00000643743.1:ENST00000644577.1:ENST00000643276.1:ENST00000409898.2:ENST00000419680.6:ENST00000644976.1:ENST00000643070.1:ENST00000646855.1:ENST00000414584.1:ENST00000455131.5:ENST00000646636.1:ENST00000642293.1:ENST00000423846.5:ENST00000644040.1:ENST00000645138.1:ENST00000437561.2:ENST00000629257.1:ENST00000645729.1	lncRNA	lncRNA	lncRNA	lncRNA	3	60	2	1.83501	3.6432700000000002	5.45153	0.0323448	1.89064e-4	0.133003	0.0119565
chr2	177397277	177397377	926127	0	+	0.38	(0.378,0.408]	chr2	101782	12	INTRON	INTRON	AGPS	ENSG00000018510.18	ENST00000679459.1:ENST00000637633.2:ENST00000680770.1:ENST00000680705.1:ENST00000681752.1:ENST00000460342.2:ENST00000681565.1:ENST00000680893.1:ENST00000681032.1:ENST00000679421.1:ENST00000680910.1:ENST00000680677.1:ENST00000409888.1:ENST00000642466.2:ENST00000264167.11:ENST00000680155.1:ENST00000679478.1:ENST00000681449.1:ENST00000681891.1:ENST00000681028.1:ENST00000679639.1:ENST00000680028.1:ENST00000679994.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	80	2	3.5186	3.64317	3.76774	8.45009e-4	4.21442e-4	0.0263813	0.0189827
chr3	195987700	195987799	1896949	0	-	0.434343	(0.408,0.44]	chr3	189877	7	INTRON	INTRON	SDHAP1	ENSG00000185485.14	ENST00000427841.5:ENST00000440850.5:ENST00000413474.5:ENST00000435731.5:ENST00000427415.1	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript:transcribed_unprocessed_pseudogene	5	163	2	3.49032	3.643045	3.79577	2.01134e-5	9.97095e-6	0.00363316	0.00229529
chr9	2772667	2772766	4227838	0	-	0.30303	(0.28,0.32]	chr9	388644	518	INTRON	INTRON	PUM3	ENSG00000080608.10	ENST00000490444.2	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	1	40	2	2.29724	3.6429799999999997	4.98872	0.0554156	0.00838468	0.18407	0.0774402
chr7	152828909	152829009	3451220	0	+	0.35	(0.32,0.35]	chr7	322567	34	INTRON	INTRON	ACTR3B	ENSG00000133627.18	ENST00000377776.7:ENST00000256001.13:ENST00000397282.2:ENST00000479402.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	56	2	2.22429	3.64284	5.06139	0.0226421	0.00179023	0.117557	0.0392749
chr7	77016255	77016355	3341730	0	+	0.36	(0.35,0.378]	chr7	311268	4	SS5_PROX	SS5_PROX:INTRON	DTX2P1-UPK3BP1-PMS2P11	ENSG00000265479.7	ENST00000636308.1:ENST00000584900.5:ENST00000579700.1	lncRNA	lncRNA	lncRNA	lncRNA	2	82	2	3.44435	3.6427750000000003	3.8412	0.00179102	1.97447e-4	0.0380316	0.0122531
chr2	219231356	219231451	1019808	0	+	0.368421	(0.35,0.378]	chr2	108856	11	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	ANKZF1	ENSG00000163516.14	ENST00000453432.5:ENST00000409849.5:ENST00000323348.10:ENST00000461731.5:ENST00000467884.5:ENST00000474225.5:ENST00000475202.5:ENST00000477479.5:ENST00000496346.5:ENST00000463792.5:ENST00000435521.5:ENST00000486203.5:ENST00000416565.1:ENST00000410034.7:ENST00000447157.5:ENST00000436226.1:ENST00000491181.5:ENST00000465550.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	89	2	2.89003	3.642755	4.39548	0.0122391	9.17511e-6	0.0910127	0.00217645
chr12	131712321	131712418	5249098	0	+	0.474227	(0.44,0.476]	chr12	499138	10	EXON_MRNA	EXON_MRNA:INTRON	SFSWAP	ENSG00000061936.10	ENST00000540469.5:ENST00000261674.9:ENST00000538548.5:ENST00000535399.1:ENST00000535236.5:ENST00000541286.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	226	2	3.56056	3.642745	3.72493	3.65116e-6	2.03115e-6	0.001363	8.75697e-4
chr19	10176118	10176214	7134679	0	-	0.395833	(0.378,0.408]	chr19	719220	1	INTRON	INTRON	DNMT1	ENSG00000130816.17	ENST00000340748.8:ENST00000359526.9:ENST00000592705.5:ENST00000679103.1:ENST00000677634.1:ENST00000676820.1:ENST00000677250.1:ENST00000677013.1:ENST00000677685.1:ENST00000677616.1:ENST00000676604.1:ENST00000678024.1:ENST00000676610.1:ENST00000678804.1:ENST00000679313.1:ENST00000677946.1:ENST00000586988.5:ENST00000588952.5:ENST00000588118.5:ENST00000592342.5:ENST00000592054.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	258	2	3.21574	3.64271	4.06968	1.637e-5	1.81953e-7	0.00324999	1.98555e-4
chr1	160250216	160250316	571488	0	-	0.5	(0.476,0.515]	chr1	69176	58	INTRON	INTRON	DCAF8	ENSG00000132716.19	ENST00000326837.6:ENST00000368073.7:ENST00000368074.6:ENST00000461888.5:ENST00000475733.5:ENST00000610139.5:ENST00000447377.5:ENST00000495887.1:ENST00000440682.5:ENST00000407642.6:ENST00000419626.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	56	2	1.74317	3.642635	5.5421	0.0396373	3.56777e-4	0.161534	0.0175154
chr16	84726386	84726485	6410167	0	+	0.525253	(0.515,0.57]	chr16	615272	95	INTRON	INTRON	USP10	ENSG00000103194.16	ENST00000562743.5:ENST00000540269.6:ENST00000563892.5:ENST00000562092.1:ENST00000569511.5:ENST00000219473.12:ENST00000570191.5:ENST00000563048.5:ENST00000562283.5:ENST00000563386.5:ENST00000569038.5:ENST00000570053.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	33	2	2.43589	3.642625	4.84936	0.0370871	0.00146032	0.139194	0.0349875
chr9	137659817	137659916	4223884	0	+	0.525253	(0.515,0.57]	chr9	388170	84	INTRON	INTRON	EHMT1	ENSG00000181090.21	ENST00000462484.5:ENST00000371394.6:ENST00000630754.2:ENST00000460843.6:ENST00000626216.2:ENST00000629335.2:ENST00000637335.1:ENST00000636376.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	33	2	2.43589	3.642625	4.84936	0.0370871	0.00146032	0.139194	0.0349875
chr21	43909299	43909399	7414233	0	+	0.59	(0.57,1]	chr21	755698	49	INTRON	INTRON	AGPAT3	ENSG00000160216.21	ENST00000291572.13:ENST00000448287.5:ENST00000398061.5:ENST00000327505.6	protein_coding	protein_coding	protein_coding	protein_coding	3	58	2	2.88261	3.642545	4.40248	0.00118949	2.27325e-6	0.031662	0.00104829
chr11	85970725	85970825	5013827	0	-	0.54	(0.515,0.57]	chr11	472906	96	INTRON	INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000530692.5:ENST00000526548.3:ENST00000630913.2:ENST00000529760.5:ENST00000528398.5:ENST00000532603.5:ENST00000356360.9:ENST00000529016.5:ENST00000526961.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	159	2	3.16764	3.6424649999999996	4.11729	1.65529e-5	1.35573e-6	0.00307083	7.5792e-4
chr11	68046998	68047098	4815720	0	+	0.53	(0.515,0.57]	chr11	448690	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TCIRG1	ENSG00000110719.10	ENST00000265686.8:ENST00000532635.5:ENST00000529364.1:ENST00000525724.5:ENST00000528981.5:ENST00000533005.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	160	2	3.25008	3.642455	4.03483	1.46293e-5	1.36371e-6	0.00306757	6.88249e-4
chr18	9589842	9589940	6946066	0	-	0.418367	(0.408,0.44]	chr18	687020	6	INTRON	INTRON	PPP4R1	ENSG00000154845.16	ENST00000400555.7:ENST00000400556.8:ENST00000285124.12:ENST00000580583.5:ENST00000578875.5:ENST00000578178.5:ENST00000583903.5:ENST00000579638.5:ENST00000584074.5:ENST00000579415.5:ENST00000581250.5:ENST00000580745.5:ENST00000582933.5:ENST00000580182.5:ENST00000582240.5:ENST00000581835.1:ENST00000583092.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	46	2	2.39162	3.6424450000000004	4.89327	0.0105837	0.00458906	0.0911864	0.0595107
chr5	10740625	10740724	2568121	0	-	0.262626	[0,0.28]	chr5	246128	60	INTRON	INTRON	DAP	ENSG00000112977.16	ENST00000230895.11:ENST00000432074.2:ENST00000514882.5:ENST00000508253.5:ENST00000510546.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	107	2	3.47423	3.642395	3.81056	0.00268371	4.09492e-4	0.0464781	0.0181306
chr2	241290370	241290470	1348316	0	-	0.53	(0.515,0.57]	chr2	141648	174	INTRON	INTRON	HDLBP	ENSG00000115677.18	ENST00000310931.10:ENST00000391976.6:ENST00000428482.5:ENST00000430918.5:ENST00000441124.5:ENST00000413241.5:ENST00000423693.5:ENST00000425989.5:ENST00000420451.5:ENST00000417540.5:ENST00000462130.1:ENST00000496569.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	33	2	2.68833	3.642315	4.5963	0.0184931	0.00370287	0.108861	0.0561162
chr4	143194619	143194718	2053766	0	+	0.545455	(0.515,0.57]	chr4	203658	63	INTRON	INTRON	USP38	ENSG00000170185.11	ENST00000307017.9:ENST00000510377.5:ENST00000683224.1:ENST00000682469.1:ENST00000684586.1:ENST00000511739.1:ENST00000684346.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	33	2	2.68833	3.642315	4.5963	0.0184931	0.00370287	0.108861	0.0561162
chr7	148716990	148717090	3443868	0	+	0.28	[0,0.28]	chr7	321168	165	INTRON	INTRON	CUL1	ENSG00000055130.18	ENST00000409469.5:ENST00000662716.1:ENST00000665936.1:ENST00000663044.1:ENST00000602748.5:ENST00000663835.1:ENST00000655324.1:ENST00000662132.1:ENST00000325222.9:ENST00000656001.1:ENST00000666124.1:ENST00000671421.1:ENST00000671397.1:ENST00000662670.1:ENST00000660240.1:ENST00000662975.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	60	2	2.52489	3.642265	4.75964	0.0232081	0.0084136	0.118148	0.082518
chr17	40245304	40245404	6609724	0	+	0.45	(0.44,0.476]	chr17	643734	244	INTRON	INTRON	WIPF2	ENSG00000171475.14	ENST00000323571.9:ENST00000583268.1:ENST00000494757.5:ENST00000582781.5:ENST00000585043.5:ENST00000394103.7:ENST00000583130.5:ENST00000584296.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	47	2	2.59888	3.6422600000000003	4.68564	0.00816201	0.00487719	0.0766625	0.0640618
chr19	34445421	34445521	7053297	0	+	0.46	(0.44,0.476]	chr19	703530	3	SS5_PROX	SS5_PROX:INTRON	UBA2	ENSG00000126261.13	ENST00000586313.1:ENST00000590048.6:ENST00000246548.9:ENST00000439527.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	47	2	2.59888	3.6422600000000003	4.68564	0.00816201	0.00487719	0.0766625	0.0640618
chr1	35177052	35177130	420428	0	-	0.5	(0.476,0.515]	chr1	50638	2	SS5_PROX	SS5_PROX:INTRON	SFPQ	ENSG00000116560.12	ENST00000470472.5:ENST00000460428.5:ENST00000468598.5:ENST00000471991.5:ENST00000485365.1:ENST00000490668.5:ENST00000466213.5:ENST00000466745.5	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	2	46	2	2.13304	3.6422350000000003	5.15143	0.024866	0.00166579	0.132101	0.0369207
chr16	84728977	84729076	6410193	0	+	0.50505	(0.476,0.515]	chr16	615272	121	INTRON	INTRON	USP10	ENSG00000103194.16	ENST00000562743.5:ENST00000540269.6:ENST00000563892.5:ENST00000562092.1:ENST00000569511.5:ENST00000219473.12:ENST00000570191.5:ENST00000563048.5:ENST00000562283.5:ENST00000563386.5:ENST00000569038.5:ENST00000570053.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	46	2	2.13304	3.6422350000000003	5.15143	0.024866	0.00166579	0.132101	0.0369207
chrX	138926732	138926832	7900830	0	-	0.5	(0.476,0.515]	chrX	804239	617	INTRON	INTRON	FGF13	ENSG00000129682.16	ENST00000441825.8:ENST00000626909.2:ENST00000436198.5:ENST00000455663.5:ENST00000448673.1:ENST00000421460.1	protein_coding	protein_coding	protein_coding	protein_coding	2	46	2	2.13304	3.6422350000000003	5.15143	0.024866	0.00166579	0.132101	0.0369207
chr22	42883985	42884085	7597031	0	-	0.45	(0.44,0.476]	chr22	778146	2	SS5_PROX	SS5_PROX:INTRON	PACSIN2	ENSG00000100266.19	ENST00000337959.8:ENST00000263246.8:ENST00000407585.5:ENST00000403744.7:ENST00000402229.5:ENST00000634914.1	protein_coding	protein_coding	protein_coding	protein_coding	3	55	2	1.98146	3.64218	5.3029	0.0186013	0.00102616	0.117264	0.029231300000000002
chr8	28916051	28916151	3725112	0	+	0.41	(0.408,0.44]	chr8	346251	239	INTRON	INTRON	HMBOX1	ENSG00000147421.18	ENST00000287701.15:ENST00000558662.5:ENST00000519662.5:ENST00000397358.7:ENST00000560599.5:ENST00000523613.5:ENST00000560357.5:ENST00000521516.5:ENST00000519047.5:ENST00000560269.1:ENST00000355231.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	46	2	2.14732	3.64217	5.13702	0.0237354	0.00202889	0.129075	0.04086
chr7	72940068	72940149	3330409	0	+	0.469136	(0.44,0.476]	chr7	309615	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	POM121	ENSG00000196313.13	ENST00000627934.3:ENST00000395270.5:ENST00000434423.5	protein_coding	protein_coding	protein_coding	protein_coding	5	162	2	3.22412	3.64177	4.05942	8.8737e-5	1.73099e-6	0.00842742	7.91759e-4
chr1	467363	467463	355223	0	-	0.31	(0.28,0.32]	chr1	40950	871	INTRON	INTRON	ENSG00000237094	ENSG00000237094.12	ENST00000455207.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	2	59	2	2.14002	3.641715	5.14341	0.0304107	0.00185891	0.130461	0.039946
chr18	13006262	13006362	6876721	0	+	0.4	(0.378,0.408]	chr18	681357	43	INTRON	INTRON	CEP192	ENSG00000101639.19	ENST00000325971.12:ENST00000506447.5:ENST00000589596.5:ENST00000507064.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	80	2	1.85968	3.64163	5.42358	0.0075228099999999996	8.39231e-4	0.0773151	0.0266487
chr1	35916328	35916423	70989	0	+	0.442105	(0.44,0.476]	chr1	9103	4	INTRON	INTRON	AGO1	ENSG00000092847.13	ENST00000373206.5:ENST00000373204.6:ENST00000674426.1:ENST00000674304.1:ENST00000635259.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	107	2	2.86452	3.6416000000000004	4.41868	0.00159222	1.31293e-5	0.0367961	0.00286967
chr2	62297042	62297141	790297	0	+	0.464646	(0.44,0.476]	chr2	88707	9	EXON_LNCRNA	EXON_LNCRNA:INTRON	ENSG00000228541	ENSG00000228541.2	ENST00000688476.1:ENST00000689009.1:ENST00000689590.1:ENST00000687402.1:ENST00000687773.1	lncRNA	lncRNA	lncRNA	lncRNA	2	47	2	1.93084	3.641555	5.35227	0.0443175	8.47974e-4	0.162302	0.0267232
chr7	152428629	152428729	3681220	0	-	0.31	(0.28,0.32]	chr7	341660	696	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000682301.1:ENST00000452749.2:ENST00000680867.1:ENST00000683800.1:ENST00000684278.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	64	2	2.02902	3.64145	5.25388	0.0174423	0.00385849	0.11269	0.0542786
chr4	128078656	128078753	2042771	0	+	0.309278	(0.28,0.32]	chr4	202862	3	INTRON	INTRON	LARP1B	ENSG00000138709.19	ENST00000512292.5:ENST00000326639.11:ENST00000508819.5:ENST00000394288.7:ENST00000432347.6:ENST00000649983.1:ENST00000650359.1:ENST00000648358.1:ENST00000507377.1	protein_coding	protein_coding	protein_coding	protein_coding	3	64	2	1.76378	3.6412299999999997	5.51868	0.0395495	0.00162747	0.161534	0.0367966
chr4	110072136	110072235	2226467	0	-	0.434343	(0.408,0.44]	chr4	218012	120	INTRON	INTRON	ELOVL6	ENSG00000170522.10	ENST00000394607.7:ENST00000302274.8:ENST00000514184.5:ENST00000506625.5:ENST00000506461.1:ENST00000503885.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	76	2	3.52471	3.64113	3.75755	0.00112428	2.62433e-4	0.0306963	0.0143317
chr6	155281858	155281958	3251387	0	-	0.42	(0.408,0.44]	chr6	302101	205	INTRON	INTRON	TFB1M	ENSG00000029639.11	ENST00000367166.5:ENST00000468889.5:ENST00000470239.1:ENST00000495806.1:ENST00000489874.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	76	2	3.52471	3.64113	3.75755	0.00112428	2.62433e-4	0.0306963	0.0143317
chr3	156552383	156552479	1844486	0	-	0.427083	(0.408,0.44]	chr3	185593	10	INTRON	INTRON	SSR3	ENSG00000114850.7	ENST00000265044.7:ENST00000467789.5:ENST00000476217.5:ENST00000463503.5:ENST00000496050.1:ENST00000467733.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	50	2	2.21857	3.641	5.06343	0.0209591	0.00101725	0.112046	0.0293497
chr2	111438107	111438207	1211231	0	-	0.26	[0,0.28]	chr2	128899	73	INTRON	INTRON	MIR4435-2HG	ENSG00000172965.17	ENST00000645030.2:ENST00000642191.1:ENST00000673798.1:ENST00000645051.2:ENST00000673649.1:ENST00000669658.1:ENST00000669917.1:ENST00000661559.1:ENST00000653687.1:ENST00000667670.1:ENST00000609220.2:ENST00000656760.1:ENST00000609902.6:ENST00000666683.1:ENST00000674070.1:ENST00000662335.1:ENST00000664422.1:ENST00000673775.1:ENST00000674092.1:ENST00000673958.1:ENST00000658936.1:ENST00000662635.1:ENST00000666204.1:ENST00000659458.1:ENST00000664443.1:ENST00000670295.1:ENST00000661655.1:ENST00000666390.1:ENST00000659079.1:ENST00000660442.1:ENST00000664009.1:ENST00000439362.6:ENST00000654473.1:ENST00000664999.1:ENST00000673728.1:ENST00000659791.1:ENST00000666144.1:ENST00000659933.1:ENST00000670715.1:ENST00000653568.1:ENST00000643013.1:ENST00000673866.1:ENST00000443467.6:ENST00000669875.1:ENST00000673653.1:ENST00000673988.1:ENST00000661945.1:ENST00000669515.1:ENST00000431385.6:ENST00000656416.1:ENST00000674037.1:ENST00000432818.5:ENST00000674013.1:ENST00000444301.5:ENST00000673964.1:ENST00000673845.1:ENST00000673756.1:ENST00000673960.1:ENST00000673804.1:ENST00000673632.1:ENST00000453478.2:ENST00000673937.1:ENST00000673654.1:ENST00000409569.2:ENST00000674087.1:ENST00000419736.5:ENST00000673840.1:ENST00000674045.1:ENST00000673821.1:ENST00000643766.1:ENST00000308604.5:ENST00000674026.1:ENST00000604981.5:ENST00000603310.5:ENST00000673894.1:ENST00000442293.5:ENST00000441075.1	lncRNA	lncRNA	lncRNA	lncRNA	2	107	2	3.39301	3.6409599999999998	3.88891	0.00353745	2.88288e-4	0.0528929	0.0150627
chr21	22361497	22361597	7385983	0	+	0.49	(0.476,0.515]	chr21	752727	1483	INTRON	INTRON	ENSG00000226043	ENSG00000226043.2	ENST00000667099.1:ENST00000654607.1:ENST00000444130.1	lncRNA	lncRNA	lncRNA	lncRNA	4	63	2	1.78315	3.64091	5.49867	0.0215899	4.28561e-4	0.123836	0.0189958
chr10	827283	827377	4541524	0	-	0.43617	(0.408,0.44]	chr10	419229	1	INTRON	INTRON	LARP4B	ENSG00000107929.16	ENST00000688365.1:ENST00000316157.8:ENST00000690516.1:ENST00000689323.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	40	2	3.05705	3.64076	4.22447	0.0161655	0.00658331	0.109464	0.0701901
chr19	18994907	18994992	7153415	0	-	0.447059	(0.44,0.476]	chr19	723007	6	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SUGP2	ENSG00000064607.17	ENST00000593795.5:ENST00000594773.5:ENST00000337018.10:ENST00000452918.7:ENST00000330854.15:ENST00000601879.5:ENST00000600239.5:ENST00000600377.1:ENST00000597280.5:ENST00000598240.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	25	619	2	2.61483	3.64039	4.66595	4.28478e-6	3.93108e-10	0.00138884	2.7008e-6
chr4	94494063	94494163	1998806	0	+	0.45	(0.44,0.476]	chr4	199554	46	INTRON	INTRON	PDLIM5	ENSG00000163110.15	ENST00000437932.5:ENST00000615540.4:ENST00000318007.9:ENST00000380180.7:ENST00000514830.5:ENST00000509333.5:ENST00000503974.5:ENST00000317968.9:ENST00000627587.2:ENST00000542407.5:ENST00000514743.5:ENST00000508216.5:ENST00000511767.3:ENST00000510099.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	55	2	1.92837	3.64032	5.35227	0.0222222	8.47974e-4	0.124303	0.0267232
chr3	183983505	183983576	1882272	0	-	0.549296	(0.515,0.57]	chr3	188189	2	EXON_LNCRNA	EXON_LNCRNA:SS3_PROX:INTRON	ABCC5	ENSG00000114770.17	ENST00000334444.11:ENST00000265586.10:ENST00000437205.5:ENST00000492216.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	44	2	2.15051	3.6401250000000003	5.12974	0.0238113	4.54392e-4	0.118889	0.0192381
chr6	131613828	131613928	3221522	0	-	0.44	(0.408,0.44]	chr6	299423	32	INTRON	INTRON	MED23	ENSG00000112282.18	ENST00000354577.8:ENST00000368068.8:ENST00000368060.7:ENST00000368058.5:ENST00000368053.8:ENST00000539158.1	protein_coding	protein_coding	protein_coding	protein_coding	4	124	2	2.59487	3.6401149999999998	4.68536	0.00202403	1.09683e-6	0.04086	5.99786e-4
chr6	57154942	57155041	2878727	0	+	0.353535	(0.35,0.378]	chr6	273319	5	INTRON	INTRON	ZNF451	ENSG00000112200.17	ENST00000357489.7:ENST00000370706.9:ENST00000504603.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	50	2	2.63527	3.63992	4.64457	0.012652	0.00443588	0.0926667	0.061054
chr8	100711285	100711381	4005477	0	-	0.427083	(0.408,0.44]	chr8	366598	12	INTRON	INTRON	PABPC1	ENSG00000070756.17	ENST00000677140.1:ENST00000677787.1:ENST00000678709.1:ENST00000676662.1:ENST00000677765.1:ENST00000677892.1:ENST00000522720.2:ENST00000520804.2:ENST00000521865.6:ENST00000677478.1:ENST00000677380.1:ENST00000520142.2:ENST00000677775.1:ENST00000678954.1:ENST00000676655.1:ENST00000676976.1:ENST00000678290.1:ENST00000318607.10:ENST00000679197.1:ENST00000519100.6:ENST00000519004.5:ENST00000522387.5:ENST00000523636.5:ENST00000522658.6:ENST00000678822.1:ENST00000523555.6:ENST00000610907.2:ENST00000517403.5:ENST00000519596.5:ENST00000519622.5:ENST00000517921.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	77	2	3.55215	3.63988	3.72761	7.01039e-4	4.662e-4	0.0241881	0.0199613
chr2	177320332	177320430	1276417	0	-	0.357143	(0.35,0.378]	chr2	134749	20	INTRON	INTRON	NFE2L2:ENSG00000213963	ENSG00000116044.16:ENSG00000213963.6	ENST00000464747.5:ENST00000397057.6:ENST00000456746.5:ENST00000430416.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	4	147	2	3.47184	3.6398	3.80776	1.48145e-4	1.13445e-5	0.0111233	0.00249255
chr20	47304600	47304699	7348988	0	-	0.424242	(0.408,0.44]	chr20	749336	53	INTRON	INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000468376.2:ENST00000435836.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	76	2	3.56057	3.639655	3.71874	9.67143e-4	3.17998e-4	0.0282401	0.0159645
chr12	118305856	118305956	5429620	0	-	0.43	(0.408,0.44]	chr12	518768	83	INTRON	INTRON	TAOK3	ENSG00000135090.14	ENST00000392533.8:ENST00000419821.6:ENST00000541186.5:ENST00000541878.5:ENST00000542902.5:ENST00000542532.5:ENST00000541786.5:ENST00000539872.5:ENST00000542692.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	55	2	1.9831	3.6396100000000002	5.29612	0.018491	0.00113523	0.116694	0.0307488
chr8	104578625	104578725	4014618	0	-	0.34	(0.32,0.35]	chr8	367439	463	INTRON	INTRON	LRP12	ENSG00000147650.12	ENST00000424843.6:ENST00000276654.10:ENST00000520770.1:ENST00000519675.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	61	2	2.14793	3.6395800000000005	5.13123	0.0110079	0.00394704	0.0927187	0.0548259
chr15	41356340	41356440	6005014	0	+	0.44	(0.408,0.44]	chr15	571324	2	SS5_PROX	SS5_PROX:INTRON	NUSAP1	ENSG00000137804.14	ENST00000668273.1:ENST00000260359.10:ENST00000558123.5:ENST00000414849.6:ENST00000450592.6:ENST00000559596.6:ENST00000560747.5:ENST00000560177.5:ENST00000557840.5:ENST00000560898.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	76	2	2.25874	3.6395099999999996	5.02028	0.00303216	0.00181031	0.0493883	0.0393822
chr12	116197773	116197873	5424749	0	-	0.27	[0,0.28]	chr12	518271	166	INTRON	INTRON	MED13L	ENSG00000123066.9	ENST00000281928.9:ENST00000650226.1:ENST00000548743.2:ENST00000647567.1:ENST00000551197.2	protein_coding	protein_coding	protein_coding	protein_coding	2	107	2	3.36489	3.6395	3.91411	0.00388509	2.57009e-4	0.0544269	0.0142784
chr17	28946068	28946168	6746176	0	-	0.48	(0.476,0.515]	chr17	662931	11	INTRON	INTRON	PHF12	ENSG00000109118.14	ENST00000332830.9:ENST00000577226.5:ENST00000582436.5:ENST00000378879.7:ENST00000268756.7:ENST00000583524.5:ENST00000483934.5:ENST00000584685.1:ENST00000582853.5:ENST00000584236.1:ENST00000583747.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	55	2	1.96833	3.639455	5.31058	0.0195007	9.15544e-4	0.119967	0.0278396
chr7	67279140	67279239	3541627	0	-	0.444444	(0.44,0.476]	chr7	330372	44	INTRON	INTRON	PMS2P4	ENSG00000067601.9	ENST00000685171.1:ENST00000688358.1:ENST00000692496.1:ENST00000685583.1:ENST00000688710.1:ENST00000684859.1:ENST00000685318.1:ENST00000691713.1:ENST00000686389.1:ENST00000690253.1:ENST00000688815.1:ENST00000692171.1:ENST00000692360.1:ENST00000689281.1:ENST00000690241.1:ENST00000689629.1:ENST00000689043.1:ENST00000688809.1:ENST00000687432.1:ENST00000687680.1:ENST00000686900.1:ENST00000691782.1:ENST00000693356.1:ENST00000691384.1:ENST00000690440.1:ENST00000686719.1:ENST00000686561.1:ENST00000688238.1:ENST00000687826.1:ENST00000689908.1:ENST00000689385.1:ENST00000689855.1:ENST00000691806.1:ENST00000689028.1:ENST00000688599.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	4	136	2	3.5823	3.63931	3.69632	3.73617e-5	3.36357e-5	0.00489903	0.00488303
chr3	45677757	45677857	1416947	0	+	0.45	(0.44,0.476]	chr3	148646	8	UTR3	UTR3:EXON_MRNA	LIMD1	ENSG00000144791.10	ENST00000273317.5	protein_coding	protein_coding	protein_coding	protein_coding	9	281	2	3.57123	3.639255	3.70728	3.40782e-6	1.60811e-7	0.00131232	1.84933e-4
chr2	130360806	130360900	863925	0	+	0.361702	(0.35,0.378]	chr2	97024	8	INTRON	INTRON	PTPN18	ENSG00000072135.13	ENST00000347849.7:ENST00000489215.5:ENST00000175756.10:ENST00000428843.5:ENST00000420717.5:ENST00000483617.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	40	2	2.78212	3.63919	4.49626	0.0168532	0.00917582	0.103549	0.0855292
chr11	3362261	3362356	4893676	0	-	0.221053	[0,0.28]	chr11	458668	3	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ZNF195	ENSG00000005801.18	ENST00000528796.5:ENST00000399602.9:ENST00000354599.10:ENST00000343338.11:ENST00000620374.4:ENST00000649622.1:ENST00000429541.6:ENST00000005082.13:ENST00000526601.5:ENST00000438262.6:ENST00000528410.5:ENST00000528218.5:ENST00000529789.5:ENST00000525313.6:ENST00000533036.5:ENST00000529228.5:ENST00000526540.5:ENST00000529678.5:ENST00000526598.1:ENST00000528636.1:ENST00000427810.6:ENST00000534569.5:ENST00000524857.5:ENST00000530643.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	48	2	2.64309	3.63916	4.63523	0.0308646	0.0139836	0.13151	0.10247
chr1	207348952	207349051	303550	0	+	0.363636	(0.35,0.378]	chr1	34932	10	INTRON	INTRON	CD55	ENSG00000196352.18	ENST00000695822.1:ENST00000695823.1:ENST00000695826.1:ENST00000695825.1:ENST00000695827.1:ENST00000645323.1:ENST00000391921.9:ENST00000367064.9:ENST00000314754.12:ENST00000644836.1:ENST00000476590.1:ENST00000465534.5:ENST00000618707.2:ENST00000635614.2:ENST00000695831.1:ENST00000634386.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	36	2	2.79643	3.639135	4.48184	0.0191702	0.013543	0.108861	0.101363
chr16	68114489	68114589	6370515	0	+	0.36	(0.35,0.378]	chr16	612188	249	INTRON	INTRON	ENSG00000261864:NFATC3	ENSG00000261864.1:ENSG00000072736.19	ENST00000548144.1:ENST00000563319.5:ENST00000569766.5:ENST00000553077.5:ENST00000566301.5:ENST00000549350.5:ENST00000566893.5:ENST00000575270.5:ENST00000561714.5:ENST00000346183.8:ENST00000568466.6:ENST00000539828.6:ENST00000562171.1:ENST00000349223.9:ENST00000329524.8:ENST00000379165.8:ENST00000562926.5:ENST00000570212.5:ENST00000563796.5:ENST00000567152.5:ENST00000563288.5:ENST00000535127.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA:processed_transcript	1	36	2	2.79643	3.639135	4.48184	0.0191702	0.013543	0.108861	0.101363
chr11	59587429	59587528	4954315	0	-	0.484848	(0.476,0.515]	chr11	465198	55	INTRON	INTRON	OSBP	ENSG00000110048.12	ENST00000263847.6:ENST00000525357.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	60	2	1.52615	3.6390900000000004	5.75203	0.0739267	4.51048e-5	0.190914	0.0054649
chr1	235430006	235430106	340313	0	+	0.48	(0.476,0.515]	chr1	39593	10	EXON_MRNA	EXON_MRNA:INTRON	TBCE	ENSG00000285053.1:ENSG00000284770.2	ENST00000644055.1:ENST00000645655.1:ENST00000647428.1:ENST00000643418.1:ENST00000646624.1:ENST00000647186.1:ENST00000646528.1:ENST00000645351.1:ENST00000643410.1:ENST00000645205.1:ENST00000645836.1:ENST00000642503.1:ENST00000646281.1:ENST00000645069.1:ENST00000644680.1:ENST00000645578.1:ENST00000642431.1:ENST00000644604.1:ENST00000651186.1:ENST00000643125.1:ENST00000406207.5:ENST00000642463.1:ENST00000645899.1:ENST00000647233.1:ENST00000644578.1:ENST00000647418.1:ENST00000645372.1:ENST00000645582.1:ENST00000643994.1:ENST00000647407.1:ENST00000642610.2:ENST00000644037.1:ENST00000646463.1:ENST00000366601.8:ENST00000643524.1:ENST00000646536.1:ENST00000643142.1:ENST00000644838.1:ENST00000646286.1:ENST00000646186.1:ENST00000643615.1:ENST00000543662.4:ENST00000646848.1:ENST00000647332.1:ENST00000645551.1:ENST00000646821.1:ENST00000472011.6:ENST00000643238.1:ENST00000646104.1:ENST00000645662.1:ENST00000643993.1:ENST00000645964.1:ENST00000642339.1:ENST00000644217.1:ENST00000642372.1:ENST00000646929.1:ENST00000644265.1:ENST00000482230.6:ENST00000644910.1:ENST00000461651.1:ENST00000646842.1:ENST00000647322.1:ENST00000646495.1:ENST00000644126.1:ENST00000643487.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	47	2	1.91817	3.63906	5.35995	0.0459211	7.54256e-4	0.164984	0.0251179
chrX	110106681	110106781	7701078	0	+	0.48	(0.476,0.515]	chrX	788144	241	INTRON	INTRON	TMEM164	ENSG00000157600.12	ENST00000372072.7:ENST00000372073.5:ENST00000372068.7:ENST00000288381.4:ENST00000461715.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	47	2	1.91817	3.63906	5.35995	0.0459211	7.54256e-4	0.164984	0.0251179
chr19	48749590	48749689	7199258	0	-	0.373737	(0.35,0.378]	chr19	729870	17	UTR3	UTR3:EXON_MRNA	FUT1	ENSG00000174951.12	ENST00000645652.2	protein_coding	protein_coding	protein_coding	protein_coding	2	50	2	1.82887	3.63903	5.44919	0.0584878	9.66659e-4	0.189395	0.0282401
chr8	102259813	102259906	4011152	0	-	0.516129	(0.515,0.57]	chr8	366958	3	INTRON	INTRON	UBR5	ENSG00000104517.13	ENST00000520539.6:ENST00000220959.8:ENST00000517465.1:ENST00000521922.5:ENST00000518205.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	42	2	2.51561	3.639025	4.76244	0.00635044	0.00362147	0.0723103	0.0533855
chr2	71120551	71120650	1154544	0	-	0.393939	(0.378,0.408]	chr2	123385	23	INTRON	INTRON	MCEE	ENSG00000124370.11	ENST00000413592.5:ENST00000244217.6	protein_coding	protein_coding	protein_coding	protein_coding	1	37	2	3.17089	3.63875	4.10661	0.0399023	0.00357279	0.143072	0.0548435
chr11	674983	675083	4889275	0	-	0.36	(0.35,0.378]	chr11	457714	2	SS3_PROX	SS3_PROX:INTRON	DEAF1	ENSG00000177030.19	ENST00000382409.4:ENST00000527170.5:ENST00000685854.1:ENST00000683307.1:ENST00000528864.6:ENST00000525626.6:ENST00000682936.1:ENST00000690068.1:ENST00000692634.1:ENST00000687329.1:ENST00000686001.1:ENST00000689835.1:ENST00000525904.5:ENST00000530813.2:ENST00000526790.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	36	2	2.48657	3.63868	4.79079	0.032907	0.00846427	0.145164	0.0776969
chr17	63798499	63798599	6661207	0	+	0.37	(0.35,0.378]	chr17	649964	4	SS5_PROX	SS5_PROX:INTRON	DDX42	ENSG00000198231.14	ENST00000578681.5:ENST00000583590.5:ENST00000389924.7:ENST00000359353.9:ENST00000578137.5:ENST00000584261.5:ENST00000577940.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	36	2	2.48657	3.63868	4.79079	0.032907	0.00846427	0.145164	0.0776969
chr10	67978269	67978369	4636953	0	-	0.54	(0.515,0.57]	chr10	426348	111	INTRON	INTRON	HERC4	ENSG00000148634.16	ENST00000277817.10:ENST00000373700.9:ENST00000412272.6:ENST00000395198.7:ENST00000473533.6:ENST00000427635.6:ENST00000460168.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	44	2	2.21273	3.63866	5.06459	0.0196151	6.03964e-4	0.109486	0.0223465
chr7	152328205	152328304	3680211	0	-	0.383838	(0.378,0.408]	chr7	341641	125	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000684262.1:ENST00000682301.1:ENST00000452749.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	65	2	2.04798	3.63861	5.22924	0.00809949	0.00172721	0.0808864	0.0374701
chrX	20246071	20246170	7773203	0	-	0.40404	(0.378,0.408]	chrX	794587	40	INTRON	INTRON	RPS6KA3	ENSG00000177189.14	ENST00000379565.9:ENST00000643085.1:ENST00000645270.1:ENST00000643402.1:ENST00000644368.1:ENST00000647265.1:ENST00000645268.1:ENST00000646610.1:ENST00000643337.1:ENST00000642835.1:ENST00000644893.1:ENST00000438357.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	65	2	2.04798	3.63861	5.22924	0.00809949	0.00172721	0.0808864	0.0374701
chr2	235497547	235497646	1041370	0	+	0.525253	(0.515,0.57]	chr2	111217	23	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	87	2	3.23735	3.638585	4.03982	2.1866e-4	6.5518e-5	0.0129728	0.00715707
chr19	29955687	29955786	7047688	0	+	0.464646	(0.44,0.476]	chr19	702657	127	INTRON	INTRON	URI1	ENSG00000105176.18	ENST00000360605.8:ENST00000570564.5:ENST00000574233.5:ENST00000392271.6:ENST00000574110.5:ENST00000574666.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	46	2	2.44514	3.63858	4.83202	0.0087381	0.00525002	0.0845538	0.0633615
chr4	184637206	184637305	2304348	0	-	0.444444	(0.44,0.476]	chr4	222868	14	INTRON	INTRON	CASP3	ENSG00000164305.19	ENST00000523916.5:ENST00000308394.9:ENST00000393585.6:ENST00000517513.5:ENST00000393588.8:ENST00000447121.2	protein_coding	protein_coding	protein_coding	protein_coding	2	46	2	2.44514	3.63858	4.83202	0.0087381	0.00525002	0.0845538	0.0633615
chr1	77681984	77682084	493458	0	-	0.38	(0.378,0.408]	chr1	58319	43	INTRON	INTRON	ZZZ3	ENSG00000036549.13	ENST00000370801.8:ENST00000370798.5:ENST00000433749.5:ENST00000414381.5:ENST00000463166.5:ENST00000469944.1:ENST00000458763.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	38	2	2.2259	3.638405	5.05091	0.0662381	0.00118558	0.181924	0.031662
chr2	26380513	26380613	715362	0	+	0.39	(0.378,0.408]	chr2	82601	50	INTRON	INTRON	SELENOI	ENSG00000138018.19	ENST00000260585.12:ENST00000447170.1	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	2.2259	3.638405	5.05091	0.0662381	0.00118558	0.181924	0.031662
chr10	133411722	133411821	4540396	0	+	0.262626	[0,0.28]	chr10	419095	86	INTRON	INTRON	MTG1	ENSG00000148824.19	ENST00000477902.6:ENST00000317502.11:ENST00000432508.3:ENST00000460848.5:ENST00000473735.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	47	2	2.49527	3.638345	4.78142	0.0436497	0.00943974	0.14882	0.0861183
chr3	9363734	9363834	1358635	0	+	0.21	[0,0.28]	chr3	142591	1	SS3_ADJ	SS3_ADJ:SS5_ADJ:SS3_PROX:SS5_PROX:INTRON	THUMPD3	ENSG00000134077.16	ENST00000417036.1:ENST00000419437.5:ENST00000345094.7:ENST00000452837.7:ENST00000515662.6	protein_coding	protein_coding	protein_coding	protein_coding	1	47	2	2.49527	3.638345	4.78142	0.0436497	0.00943974	0.14882	0.0861183
chr8	17960444	17960544	3708123	0	+	0.22	[0,0.28]	chr8	343898	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	PCM1	ENSG00000078674.19	ENST00000325083.13:ENST00000519253.5:ENST00000524226.5:ENST00000517836.5:ENST00000518762.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	58	2	2.33097	3.6382900000000005	4.94561	0.0158969	0.0150263	0.109464	0.0994339
chr14	64427036	64427136	5751100	0	+	0.41	(0.408,0.44]	chr14	546240	3	SS3_PROX	SS3_PROX:INTRON	MTHFD1	ENSG00000100714.17	ENST00000545908.6:ENST00000554768.6:ENST00000555252.5:ENST00000555709.7:ENST00000652179.1:ENST00000652337.1:ENST00000650853.1:ENST00000557370.3:ENST00000651537.1:ENST00000553391.2:ENST00000652509.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	38	2	2.84077	3.638285	4.4358	0.0132196	0.00893097	0.0940535	0.0849778
chr19	49559481	49559571	7201135	0	-	0.433333	(0.408,0.44]	chr19	730449	4	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	NOSIP	ENSG00000142546.14	ENST00000596358.6:ENST00000339093.7:ENST00000598820.5:ENST00000601015.5:ENST00000601340.5:ENST00000598550.5:ENST00000599537.5:ENST00000598296.5:ENST00000594932.5:ENST00000600019.5:ENST00000598544.1:ENST00000599425.5:ENST00000598839.1:ENST00000601107.1:ENST00000593345.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:non_stop_decay:nonsense_mediated_decay	1	38	2	2.84077	3.638285	4.4358	0.0132196	0.00893097	0.0940535	0.0849778
chr7	100263540	100263640	3586321	0	-	0.42	(0.408,0.44]	chr7	334323	171	INTRON	INTRON	CASTOR3	ENSG00000239521.10	ENST00000649671.1:ENST00000543273.5:ENST00000328453.9:ENST00000454084.5:ENST00000435519.6:ENST00000414739.3:ENST00000647868.1:ENST00000689058.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	1	38	2	2.84077	3.638285	4.4358	0.0132196	0.00893097	0.0940535	0.0849778
chrX	66221428	66221528	7673278	0	+	0.43	(0.408,0.44]	chrX	785355	128	INTRON	INTRON	HEPH	ENSG00000089472.18	ENST00000519389.6:ENST00000683049.1:ENST00000458621.6:ENST00000684042.1:ENST00000343002.7:ENST00000336279.9:ENST00000441993.7:ENST00000419594.6:ENST00000682362.1:ENST00000425114.2:ENST00000682927.1:ENST00000683420.1:ENST00000684071.1:ENST00000684625.1:ENST00000684603.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	38	2	2.84077	3.638285	4.4358	0.0132196	0.00893097	0.0940535	0.0849778
chr1	1556459	1556558	360138	0	-	0.454545	(0.44,0.476]	chr1	41847	101	INTRON	INTRON	SSU72	ENSG00000160075.12	ENST00000291386.4:ENST00000378725.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	46	2	2.0776	3.6382000000000003	5.1988	0.0292951	0.00151532	0.141862	0.0352794
chr6	44438080	44438180	2873433	0	+	0.45	(0.44,0.476]	chr6	272707	78	INTRON	INTRON	CDC5L	ENSG00000096401.8	ENST00000371477.4	protein_coding	protein_coding	protein_coding	protein_coding	2	46	2	2.0776	3.6382000000000003	5.1988	0.0292951	0.00151532	0.141862	0.0352794
chr20	527237	527334	7303813	0	-	0.319588	(0.28,0.32]	chr20	743566	3	SS3_PROX	SS3_PROX:INTRON	CSNK2A1	ENSG00000101266.19	ENST00000646561.1:ENST00000217244.9:ENST00000643660.1:ENST00000645623.1:ENST00000400227.8:ENST00000349736.10:ENST00000644170.1:ENST00000643700.1:ENST00000645910.1:ENST00000645840.1:ENST00000646305.1:ENST00000645260.1:ENST00000642689.1:ENST00000645234.1:ENST00000646814.1:ENST00000646477.1:ENST00000644885.1:ENST00000644710.1:ENST00000647155.1:ENST00000644003.1:ENST00000645249.1:ENST00000647026.1:ENST00000400217.7:ENST00000647348.1:ENST00000643600.1:ENST00000643680.1:ENST00000460062.7:ENST00000643968.1:ENST00000644177.1:ENST00000609525.2:ENST00000645091.1:ENST00000609606.6:ENST00000608066.6:ENST00000646908.1:ENST00000645187.1:ENST00000642160.1:ENST00000608490.2:ENST00000643910.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	43	2	2.18975	3.637985	5.08622	0.0776042	0.00227525	0.196285	0.0437013
chr17	78223953	78224052	6682272	0	+	0.50505	(0.476,0.515]	chr17	652767	4	UTR3	UTR3:EXON_MRNA	BIRC5	ENSG00000089685.15	ENST00000301633.8:ENST00000350051.8:ENST00000374948.6	protein_coding	protein_coding	protein_coding	protein_coding	2	75	2	3.5704	3.637965	3.70553	8.75056e-4	3.44823e-4	0.0270926	0.0165103
chr22	45330267	45330350	7530349	0	+	0.506024	(0.476,0.515]	chr22	769968	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	FAM118A	ENSG00000100376.12	ENST00000216214.7:ENST00000441876.7:ENST00000476478.1:ENST00000459849.1:ENST00000476754.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	161	2	3.62777	3.637925	3.64808	4.68477e-5	3.56553e-6	0.00593131	0.0012287
chr12	132579769	132579866	5251711	0	+	0.453608	(0.44,0.476]	chr12	499518	25	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1:ENST00000542306.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	65	2	2.41757	3.6378700000000004	4.85817	0.00417342	0.00223254	0.057064	0.0435144
chr1	93247054	93247154	163868	0	+	0.48	(0.476,0.515]	chr1	17798	1	SS5_PROX	SS5_PROX:INTRON	CCDC18	ENSG00000122483.18	ENST00000343253.11:ENST00000401026.7:ENST00000690592.1:ENST00000370276.6:ENST00000690025.1:ENST00000692873.1:ENST00000688770.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	49	2	1.92984	3.6378649999999997	5.34589	0.0466474	3.224e-4	0.151522	0.0159645
chr19	3407400	3407500	7000035	0	+	0.5	(0.476,0.515]	chr19	694173	248	INTRON	INTRON	NFIC	ENSG00000141905.19	ENST00000641145.1:ENST00000589123.5:ENST00000395111.7:ENST00000586919.5:ENST00000341919.7:ENST00000443272.3:ENST00000590282.5	protein_coding	protein_coding	protein_coding	protein_coding	2	49	2	1.92984	3.6378649999999997	5.34589	0.0466474	3.224e-4	0.151522	0.0159645
chr1	171585041	171585138	254243	0	+	0.381443	(0.378,0.408]	chr1	30258	1	INTRON	INTRON	PRRC2C	ENSG00000117523.18	ENST00000647382.2:ENST00000367742.7:ENST00000338920.8:ENST00000426496.6:ENST00000495585.1:ENST00000644916.1	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	2.66785	3.6377800000000002	4.60771	0.0224639	0.00567576	0.11692	0.0678837
chr16	8823596	8823696	6284923	0	+	0.36	(0.35,0.378]	chr16	601851	101	INTRON	INTRON	PMM2	ENSG00000140650.13	ENST00000566983.5:ENST00000683435.1:ENST00000683094.1:ENST00000566604.5:ENST00000570134.5:ENST00000268261.9:ENST00000683274.1:ENST00000682393.1:ENST00000566540.5:ENST00000562318.5:ENST00000570076.5:ENST00000569958.5:ENST00000565221.5:ENST00000567697.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	48	2	2.23043	3.637775	5.04512	0.0187487	0.00393262	0.117523	0.0548259
chr16	11912397	11912497	6446376	0	-	0.37	(0.35,0.378]	chr16	621130	84	INTRON	INTRON	GSPT1	ENSG00000103342.13	ENST00000434724.7:ENST00000439887.6:ENST00000420576.6:ENST00000568849.5:ENST00000562169.1	protein_coding	protein_coding	protein_coding	protein_coding	2	48	2	2.23043	3.637775	5.04512	0.0187487	0.00393262	0.117523	0.0548259
chrX	101133054	101133153	7694495	0	+	0.333333	(0.32,0.35]	chrX	787402	2	INTRON	INTRON	CENPI	ENSG00000102384.14	ENST00000684367.1:ENST00000423383.3:ENST00000682095.1:ENST00000372927.5:ENST00000372926.5	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	2.90786	3.6377049999999995	4.36755	0.0300552	0.00993008	0.129138	0.0877296
chr17	61806074	61806173	6808359	0	-	0.414141	(0.408,0.44]	chr17	672599	37	INTRON	INTRON	BRIP1	ENSG00000136492.10	ENST00000259008.7:ENST00000682755.1:ENST00000682453.1:ENST00000683039.1:ENST00000682989.1:ENST00000682589.1:ENST00000683235.1:ENST00000682477.1:ENST00000684584.1:ENST00000577598.5:ENST00000682066.1:ENST00000584322.2:ENST00000683381.1:ENST00000579028.2:ENST00000682611.1:ENST00000683692.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	37	2	2.27698	3.637675	4.99837	0.0583528	0.00131369	0.167723	0.0333932
chr9	34043948	34044048	4245802	0	-	0.44	(0.408,0.44]	chr9	390499	107	INTRON	INTRON	UBAP2	ENSG00000137073.24	ENST00000379238.7:ENST00000683659.1:ENST00000682239.1:ENST00000683140.1:ENST00000682209.1:ENST00000681980.1:ENST00000360802.6:ENST00000683252.1:ENST00000684158.1:ENST00000682914.1:ENST00000683717.1:ENST00000379239.9:ENST00000683084.1:ENST00000684754.1:ENST00000629575.2:ENST00000684298.1:ENST00000480885.5:ENST00000459988.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	37	2	2.27698	3.637675	4.99837	0.0583528	0.00131369	0.167723	0.0333932
chr2	241293761	241293861	1348350	0	-	0.58	(0.57,1]	chr2	141648	208	INTRON	INTRON	HDLBP	ENSG00000115677.18	ENST00000310931.10:ENST00000391976.6:ENST00000428482.5:ENST00000430918.5:ENST00000441124.5:ENST00000413241.5:ENST00000423693.5:ENST00000425989.5:ENST00000420451.5:ENST00000417540.5:ENST00000462130.1:ENST00000496569.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	55	2	3.30588	3.6376150000000003	3.96935	1.12273e-4	4.27649e-5	0.00903968	0.00555805
chr8	123222367	123222465	4041288	0	-	0.316327	(0.28,0.32]	chr8	368565	17	INTRON	INTRON	C8orf76	ENSG00000189376.12	ENST00000276704.6:ENST00000519791.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	43	2	2.51488	3.6375949999999997	4.76031	0.0380957	0.00656106	0.141678	0.0735539
chrX	139142315	139142415	7902989	0	-	0.32	(0.28,0.32]	chrX	804252	1513	INTRON	INTRON	FGF13	ENSG00000129682.16	ENST00000441825.8:ENST00000626909.2:ENST00000436198.5:ENST00000448673.1:ENST00000421460.1	protein_coding	protein_coding	protein_coding	protein_coding	1	43	2	2.51488	3.6375949999999997	4.76031	0.0380957	0.00656106	0.141678	0.0735539
chr1	246550428	246550523	680826	0	-	0.326316	(0.32,0.35]	chr1	79804	15	INTRON	INTRON	TFB2M	ENSG00000162851.8	ENST00000366514.5	protein_coding	protein_coding	protein_coding	protein_coding	2	87	2	3.51808	3.63751	3.75694	0.00151238	3.37248e-4	0.0352794	0.0163178
chr10	63242566	63242666	4633153	0	-	0.53	(0.515,0.57]	chr10	426215	222	INTRON	INTRON	JMJD1C	ENSG00000171988.20	ENST00000399262.7:ENST00000402544.5:ENST00000542921.5:ENST00000469152.5:ENST00000489372.4:ENST00000633035.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	50	2	2.17039	3.637435	5.10448	0.00900252	0.0010345	0.0851009	0.029231300000000002
chr22	21981799	21981899	7562018	0	-	0.4	(0.378,0.408]	chr22	773553	2	SS5_PROX	SS5_PROX:INTRON	TOP3B	ENSG00000100038.20	ENST00000357179.10:ENST00000457179.5:ENST00000444502.5:ENST00000398793.6:ENST00000424393.5:ENST00000437929.5:ENST00000430142.5:ENST00000456075.5:ENST00000449704.5:ENST00000437103.1:ENST00000434517.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	24	766	2	3.53032	3.637375	3.74443	6.44273e-8	4.88601e-9	1.06842e-4	2.26352e-5
chr3	40531529	40531629	1402536	0	+	0.41	(0.408,0.44]	chr3	147388	1	SS3_PROX	SS3_PROX:INTRON	ZNF621	ENSG00000172888.12	ENST00000310898.5:ENST00000403205.6:ENST00000431278.5:ENST00000339296.10:ENST00000490457.5:ENST00000462161.5:ENST00000453351.1:ENST00000492098.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	37	2	2.6542	3.6371450000000003	4.62009	0.0227514	0.00504155	0.117618	0.0646039
chrX	154075905	154076005	7912880	0	-	0.43	(0.408,0.44]	chrX	805637	24	INTRON	INTRON	MECP2	ENSG00000169057.24	ENST00000303391.11:ENST00000453960.7:ENST00000628176.2:ENST00000407218.5:ENST00000369957.5:ENST00000631210.1:ENST00000496908.5:ENST00000415944.3:ENST00000630151.2:ENST00000676382.1:ENST00000611468.2:ENST00000637533.1:ENST00000675526.1:ENST00000637791.1:ENST00000675841.1:ENST00000674996.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	37	2	2.6542	3.6371450000000003	4.62009	0.0227514	0.00504155	0.117618	0.0646039
chr21	39344745	39344845	7465658	0	-	0.27	[0,0.28]	chr21	760595	2	SS5_PROX	SS5_PROX:INTRON	HMGN1	ENSG00000205581.11	ENST00000492280.5:ENST00000431390.5:ENST00000486741.5:ENST00000380749.10:ENST00000288344.14:ENST00000652622.1:ENST00000436324.5:ENST00000380748.5:ENST00000419378.5:ENST00000489072.5:ENST00000482192.5:ENST00000380747.5:ENST00000485550.5:ENST00000490032.5:ENST00000443046.5:ENST00000464078.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	80	2	1.83992	3.6371000000000002	5.43428	0.0212029	0.00400834	0.123192	0.0551303
chr8	92826741	92826841	3990373	0	-	0.27	[0,0.28]	chr8	365358	403	INTRON	INTRON	FLJ46284	ENSG00000248858.7	ENST00000504861.2	lncRNA	lncRNA	lncRNA	lncRNA	4	80	2	1.83992	3.6371000000000002	5.43428	0.0212029	0.00400834	0.123192	0.0551303
chr17	43166754	43166853	6776294	0	-	0.454545	(0.44,0.476]	chr17	667877	11	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	BRCA1:ENSG00000267002	ENSG00000012048.23:ENSG00000267002.4	ENST00000634433.1:ENST00000635600.1:ENST00000642336.1:ENST00000590740.2:ENST00000653081.1:ENST00000634503.1:ENST00000634994.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	1	36	2	3.14559	3.63701	4.12843	0.0337192	0.00384923	0.134145	0.0562562
chr19	38849368	38849445	7180842	0	-	0.688312	(0.57,1]	chr19	725901	1	SS5_PROX	SS5_PROX:INTRON	HNRNPL	ENSG00000104824.18	ENST00000221419.10:ENST00000388749.7:ENST00000601449.5:ENST00000600873.5:ENST00000598985.5:ENST00000601047.5:ENST00000601813.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	131	2	3.15023	3.6369949999999998	4.12376	6.06455e-7	2.71701e-7	4.52668e-4	2.57429e-4
chr11	47994206	47994306	4789355	0	+	0.34	(0.32,0.35]	chr11	443265	128	INTRON	INTRON	PTPRJ	ENSG00000149177.14	ENST00000418331.7:ENST00000440289.6:ENST00000527952.1:ENST00000534219.5	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	2.31405	3.63688	4.95971	0.0517107	0.00663522	0.176696	0.0703181
chr12	6971191	6971291	5070579	0	+	0.35	(0.32,0.35]	chr12	479216	1	SS5_PROX	SS5_PROX:INTRON	EMG1	ENSG00000126749.16	ENST00000599672.6:ENST00000611981.1:ENST00000607161.5:ENST00000620255.1:ENST00000261406.7:ENST00000539196.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	38	2	2.31405	3.63688	4.95971	0.0517107	0.00663522	0.176696	0.0703181
chr13	112860030	112860108	5547978	0	+	0.346154	(0.32,0.35]	chr13	530052	2	SS3_PROX	SS3_PROX:INTRON	ATP11A	ENSG00000068650.19	ENST00000375645.8:ENST00000375630.6:ENST00000487903.5:ENST00000459908.5:ENST00000418678.5:ENST00000471555.5:ENST00000415301.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	38	2	2.31405	3.63688	4.95971	0.0517107	0.00663522	0.176696	0.0703181
chr14	37163580	37163680	5877923	0	-	0.35	(0.32,0.35]	chr14	558013	2882	INTRON	INTRON	SLC25A21	ENSG00000183032.12	ENST00000331299.6:ENST00000555449.5:ENST00000557611.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	38	2	2.31405	3.63688	4.95971	0.0517107	0.00663522	0.176696	0.0703181
chr3	25752952	25753051	1642534	0	-	0.353535	(0.35,0.378]	chr3	168666	13	INTRON	INTRON	NGLY1	ENSG00000151092.18	ENST00000280700.10:ENST00000428257.5:ENST00000675217.1:ENST00000676225.1:ENST00000493324.5:ENST00000396649.7:ENST00000308710.9:ENST00000280699.13:ENST00000674841.1:ENST00000675234.1:ENST00000463611.2:ENST00000417874.6:ENST00000427041.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	39	2	2.24535	3.636835	5.02832	0.0647516	0.00156444	0.179192	0.0365263
chr5	103194107	103194204	2440812	0	+	0.360825	(0.35,0.378]	chr5	234350	28	INTRON	INTRON	PPIP5K2	ENSG00000145725.20	ENST00000321521.13:ENST00000358359.8:ENST00000613674.4:ENST00000414217.5:ENST00000627916.2:ENST00000509597.5:ENST00000613907.4:ENST00000511022.2	protein_coding	protein_coding	protein_coding	protein_coding	1	39	2	2.24535	3.636835	5.02832	0.0647516	0.00156444	0.179192	0.0365263
chr3	52276353	52276452	1698959	0	-	0.585859	(0.57,1]	chr3	174719	52	INTRON	INTRON	WDR82	ENSG00000164091.12	ENST00000296490.8:ENST00000469000.5:ENST00000463624.1	protein_coding	protein_coding	protein_coding	protein_coding	8	118	2	3.00842	3.636825	4.26523	4.50163e-6	7.8586e-8	0.00156371	1.21354e-4
chr2	144460815	144460913	1241206	0	-	0.346939	(0.32,0.35]	chr2	131707	58	INTRON	INTRON	ZEB2	ENSG00000169554.23	ENST00000636471.1:ENST00000627532.3:ENST00000638128.1:ENST00000637304.1:ENST00000636179.1:ENST00000636820.1:ENST00000419938.5:ENST00000409487.7:ENST00000636732.2:ENST00000636026.2:ENST00000675069.1:ENST00000689298.1:ENST00000539609.7:ENST00000558170.6:ENST00000303660.8:ENST00000427902.5:ENST00000637267.2:ENST00000392861.6:ENST00000431672.4:ENST00000409211.5:ENST00000465308.5:ENST00000434448.5:ENST00000472146.5:ENST00000461784.3:ENST00000476394.5:ENST00000637591.2:ENST00000479735.1:ENST00000453352.5:ENST00000435831.5:ENST00000444559.5:ENST00000630572.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	69	2	1.72405	3.636745	5.54944	0.0275418	9.42646e-4	0.137011	0.0280811
chr7	72889430	72889529	3329890	0	+	0.464646	(0.44,0.476]	chr7	309555	92	INTRON	INTRON	POM121	ENSG00000196313.13	ENST00000627934.3:ENST00000395270.5	protein_coding	protein_coding	protein_coding	protein_coding	5	167	2	2.8424	3.6367399999999996	4.43108	6.35745e-4	1.1759e-7	0.0231636	1.53574e-4
chr7	77541020	77541118	3342049	0	+	0.357143	(0.35,0.378]	chr7	311308	18	INTRON	INTRON	PTPN12	ENSG00000127947.16	ENST00000248594.11:ENST00000460731.5:ENST00000523952.5:ENST00000433369.6:ENST00000415482.6:ENST00000435495.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	48	2	2.2877	3.636655	4.98561	0.0155765	0.00474226	0.109411	0.0600445
chr4	88752619	88752718	2199899	0	-	0.40404	(0.378,0.408]	chr4	215911	16	INTRON	INTRON	FAM13A	ENSG00000138640.15	ENST00000395002.6:ENST00000264344.10:ENST00000511573.5:ENST00000503556.5:ENST00000511976.5:ENST00000508369.5:ENST00000513837.5:ENST00000504836.5:ENST00000507352.1:ENST00000515155.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	64	2	1.80483	3.63658	5.46833	0.0201276	7.05018e-4	0.121243	0.024224
chr6	57160657	57160732	2878785	0	+	0.386667	(0.378,0.408]	chr6	273320	2	SS3_PROX	SS3_PROX:INTRON	ZNF451	ENSG00000112200.17	ENST00000357489.7:ENST00000370706.9:ENST00000504603.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	64	2	1.80483	3.63658	5.46833	0.0201276	7.05018e-4	0.121243	0.024224
chr18	56624861	56624961	6979763	0	-	0.38	(0.378,0.408]	chr18	690545	4	SS3_PROX	SS3_PROX:INTRON	TXNL1	ENSG00000091164.13	ENST00000217515.11:ENST00000590954.5:ENST00000587807.5:ENST00000586262.5:ENST00000587613.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	47	2	2.46345	3.636565	4.80968	0.00827342	0.00679828	0.0813266	0.0711802
chr7	106261015	106261109	3608349	0	-	0.382979	(0.378,0.408]	chr7	336487	13	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	NAMPT	ENSG00000105835.13	ENST00000681491.1:ENST00000222553.8:ENST00000681494.1:ENST00000680708.1:ENST00000681653.1:ENST00000681391.1:ENST00000680991.1:ENST00000680077.1:ENST00000681456.1:ENST00000680675.1:ENST00000681550.1:ENST00000680864.1:ENST00000680584.1:ENST00000680669.1:ENST00000424768.2:ENST00000681255.1:ENST00000679873.1:ENST00000679643.1:ENST00000681878.1:ENST00000489732.2:ENST00000679951.1:ENST00000680823.1:ENST00000680468.1:ENST00000679894.1:ENST00000679461.1:ENST00000681372.1:ENST00000681936.1:ENST00000680152.1:ENST00000681887.1:ENST00000680129.1:ENST00000680786.1:ENST00000681223.1:ENST00000681631.1:ENST00000679717.1:ENST00000680516.1:ENST00000484527.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	47	2	2.46345	3.636565	4.80968	0.00827342	0.00679828	0.0813266	0.0711802
chr7	139268196	139268296	3436959	0	+	0.38	(0.378,0.408]	chr7	320226	14	INTRON	INTRON	UBN2	ENSG00000157741.15	ENST00000473989.8:ENST00000483726.1	protein_coding	protein_coding	protein_coding	protein_coding	2	47	2	2.46345	3.636565	4.80968	0.00827342	0.00679828	0.0813266	0.0711802
chr9	5011179	5011279	4096082	0	+	0.4	(0.378,0.408]	chr9	373235	248	INTRON	INTRON	JAK2	ENSG00000096968.14	ENST00000636127.1:ENST00000476574.5:ENST00000381652.4	protein_coding	protein_coding	protein_coding	protein_coding	2	47	2	2.46345	3.636565	4.80968	0.00827342	0.00679828	0.0813266	0.0711802
chr10	35357974	35358073	4424717	0	+	0.363636	(0.35,0.378]	chr10	407899	204	INTRON	INTRON	CCNY	ENSG00000108100.18	ENST00000374706.5:ENST00000490012.6:ENST00000493157.6:ENST00000374704.8:ENST00000265375.13:ENST00000339497.7:ENST00000492478.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	48	2	2.17079	3.6365250000000002	5.10226	0.0225978	0.00327038	0.124921	0.0508595
chr2	126662354	126662454	862071	0	+	0.36	(0.35,0.378]	chr2	96613	37	INTRON	INTRON	GYPC	ENSG00000136732.16	ENST00000459787.1:ENST00000259254.9:ENST00000409836.3:ENST00000356887.12	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	48	2	2.17079	3.6365250000000002	5.10226	0.0225978	0.00327038	0.124921	0.0508595
chr12	6515120	6515220	5069438	0	+	0.37	(0.35,0.378]	chr12	478686	2	SS5_PROX	SS5_PROX:INTRON	NCAPD2	ENSG00000010292.13	ENST00000382457.8:ENST00000539084.5:ENST00000315579.10:ENST00000545732.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	39	2	2.60341	3.63635	4.66929	0.0275785	0.00541617	0.123904	0.066545000000000007
chr18	737461	737560	6939945	0	-	0.373737	(0.35,0.378]	chr18	686467	1	INTRON	INTRON	YES1	ENSG00000176105.14	ENST00000584307.5:ENST00000314574.5:ENST00000577961.5	protein_coding	protein_coding	protein_coding	protein_coding	1	39	2	2.60341	3.63635	4.66929	0.0275785	0.00541617	0.123904	0.066545000000000007
chr9	130799953	130800053	4214724	0	+	0.5	(0.476,0.515]	chr9	386427	851	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000393293.4	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	2.9435	3.6363250000000003	4.32915	0.0124637	0.00929849	0.0973643	0.0817766
chr11	2386156	2386255	4722666	0	+	0.474747	(0.44,0.476]	chr11	436914	1	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CD81	ENSG00000110651.12	ENST00000475945.6:ENST00000530648.5:ENST00000263645.10:ENST00000533417.5:ENST00000492627.5:ENST00000527343.5:ENST00000464784.6:ENST00000493525.6:ENST00000381036.7:ENST00000492252.5	protein_coding	protein_coding	protein_coding	protein_coding	1	37	2	2.20949	3.6361850000000002	5.06288	0.0672585	0.00102416	0.183051	0.0294041
chr5	72860210	72860310	2387563	0	+	0.28	[0,0.28]	chr5	230378	39	INTRON	INTRON	TNPO1	ENSG00000083312.19	ENST00000680533.1:ENST00000520850.5:ENST00000337273.10:ENST00000680025.1:ENST00000523768.5:ENST00000681711.1:ENST00000518279.5:ENST00000679378.1:ENST00000513944.5:ENST00000506351.6:ENST00000506528.5:ENST00000511754.5:ENST00000509030.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	69	2	1.75741	3.636145	5.51488	0.0424454	0.00314116	0.161763	0.0500389
chr10	125063123	125063223	4713360	0	-	0.39	(0.378,0.408]	chr10	434897	236	INTRON	INTRON	CTBP2	ENSG00000175029.17	ENST00000337195.9:ENST00000411419.6:ENST00000494626.6:ENST00000531469.5:ENST00000460976.5:ENST00000476817.1:ENST00000530884.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	47	2	2.04292	3.6360799999999998	5.22924	0.0326035	0.00172721	0.145164	0.0374701
chr1	37541314	37541407	424136	0	-	0.408602	(0.408,0.44]	chr1	51277	7	EXON_MRNA	EXON_MRNA:INTRON	SNIP1	ENSG00000163877.11	ENST00000296215.8:ENST00000638725.1:ENST00000468040.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	46	2	2.44674	3.6360200000000003	4.8253	0.00868283	0.0056738	0.0842798	0.0653997
chr7	66578028	66578128	3539972	0	-	0.43	(0.408,0.44]	chr7	330265	1	SS5_PROX	SS5_PROX:INTRON	RABGEF1P1	ENSG00000229180.8	ENST00000639011.1:ENST00000692299.1:ENST00000686269.1:ENST00000649635.1:ENST00000686397.1:ENST00000690339.1:ENST00000638711.1:ENST00000692179.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	2	46	2	2.44674	3.6360200000000003	4.8253	0.00868283	0.0056738	0.0842798	0.0653997
chr8	98623765	98623865	3998134	0	-	0.5	(0.476,0.515]	chr8	366060	216	INTRON	INTRON	STK3	ENSG00000104375.17	ENST00000617590.1:ENST00000419617.7:ENST00000523601.5:ENST00000518582.5:ENST00000518165.5:ENST00000521649.5:ENST00000424861.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	101	2	3.2496	3.635845	4.02209	3.39435e-4	6.68973e-5	0.0170719	0.00677892
chr1	2259152	2259252	2475	0	+	0.59	(0.57,1]	chr1	557	107	INTRON	INTRON	SKI	ENSG00000157933.10	ENST00000378536.5:ENST00000508416.1:ENST00000478223.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	55	2	3.40706	3.63583	3.8646	8.0672e-5	5.92509e-5	0.00804467	0.00631599
chr17	29256938	29257038	6747422	0	-	0.34	(0.32,0.35]	chr17	663218	12	UTR3	UTR3:EXON_MRNA	NUFIP2	ENSG00000108256.9	ENST00000225388.9	protein_coding	protein_coding	protein_coding	protein_coding	6	84	2	1.56912	3.63576	5.7024	0.0247709	5.25722e-4	0.131869	0.0210958
chr17	31965784	31965874	6595966	0	+	0.377778	(0.35,0.378]	chr17	641556	2	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	SUZ12	ENSG00000178691.11	ENST00000322652.10:ENST00000580398.1:ENST00000494429.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	109	2	3.32386	3.63562	3.94738	2.06843e-4	1.8439e-4	0.0131276	0.0118315
chr2	118097398	118097497	855274	0	+	0.242424	[0,0.28]	chr2	96039	2	INTRON	INTRON	INSIG2	ENSG00000125629.16	ENST00000411929.5:ENST00000245787.9:ENST00000485520.5:ENST00000471186.5:ENST00000467223.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	43	2	2.80396	3.63561	4.46726	0.0427997	0.0161429	0.148082	0.109464
chr2	191892255	191892355	961462	0	+	0.49	(0.476,0.515]	chr2	104333	451	INTRON	INTRON	CAVIN2-AS1	ENSG00000233766.8	ENST00000424116.7	lncRNA	lncRNA	lncRNA	lncRNA	1	39	2	3.05152	3.63558	4.21964	0.0167715	0.0064848	0.110511	0.0699952
chr5	69368975	69369072	2637112	0	-	0.43299	(0.408,0.44]	chr5	250494	20	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	AK6:TAF9	ENSG00000085231.14:ENSG00000273841.6	ENST00000380822.9:ENST00000502819.5:ENST00000380818.7:ENST00000512561.5:ENST00000618980.1:ENST00000685776.1:ENST00000506736.2:ENST00000217893.10:ENST00000688968.1:ENST00000504109.6:ENST00000691076.1:ENST00000693414.1:ENST00000328663.8:ENST00000693538.1:ENST00000508954.4:ENST00000691515.1:ENST00000690749.1:ENST00000689249.1:ENST00000686157.1:ENST00000503245.6:ENST00000512152.6:ENST00000509462.6:ENST00000691555.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	104	2	3.36795	3.63553	3.90311	2.02232e-4	1.24325e-4	0.0129814	0.00952291
chr11	61360184	61360282	4956747	0	-	0.459184	(0.44,0.476]	chr11	465833	26	UTR5	UTR5:EXON_MRNA:INTRON	CYB561A3	ENSG00000162144.10	ENST00000426130.6:ENST00000294072.9:ENST00000540317.5:ENST00000447532.6:ENST00000546151.5:ENST00000540755.5:ENST00000544118.5:ENST00000537364.5:ENST00000539128.5:ENST00000538263.5:ENST00000542411.5:ENST00000536687.1:ENST00000545361.5:ENST00000537680.5:ENST00000535152.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	37	2	2.74063	3.635485	4.53034	0.0176095	0.00672609	0.105143	0.0738715
chr1	1104360	1104459	358693	0	-	0.474747	(0.44,0.476]	chr1	41365	117	INTRON	INTRON	C1orf159	ENSG00000131591.18	ENST00000379339.5:ENST00000379325.7:ENST00000421241.7:ENST00000467751.5:ENST00000477196.5:ENST00000379319.5:ENST00000434641.5:ENST00000482816.5:ENST00000462097.5:ENST00000475119.5:ENST00000472741.5:ENST00000480643.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	34	2	2.66433	3.6353999999999997	4.60647	0.0194358	0.0102339	0.119831	0.0850389
chr12	113773214	113773314	5420759	0	-	0.45	(0.44,0.476]	chr12	517975	2	SS5_PROX	SS5_PROX:INTRON	LINC01234	ENSG00000249550.8	ENST00000661760.1:ENST00000550905.5:ENST00000663699.1:ENST00000669504.1:ENST00000661033.2:ENST00000669851.1:ENST00000655514.1:ENST00000662465.1:ENST00000659032.1:ENST00000547963.1:ENST00000550223.6:ENST00000657279.1:ENST00000654810.1:ENST00000510694.3:ENST00000662051.1	lncRNA	lncRNA	lncRNA	lncRNA	1	34	2	2.66433	3.6353999999999997	4.60647	0.0194358	0.0102339	0.119831	0.0850389
chr19	12170587	12170687	7021443	0	+	0.45	(0.44,0.476]	chr19	698045	8	INTRON	INTRON	ZNF136	ENSG00000196646.12	ENST00000439995.5:ENST00000425827.5:ENST00000652580.1:ENST00000343979.6:ENST00000418338.1	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	2.66433	3.6353999999999997	4.60647	0.0194358	0.0102339	0.119831	0.0850389
chr21	36351189	36351288	7404011	0	+	0.464646	(0.44,0.476]	chr21	754328	14	INTRON	INTRON	MORC3	ENSG00000159256.13	ENST00000400485.6:ENST00000487909.5:ENST00000485299.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	34	2	2.66433	3.6353999999999997	4.60647	0.0194358	0.0102339	0.119831	0.0850389
chr3	182949031	182949131	1879615	0	-	0.47	(0.44,0.476]	chr3	187800	10	INTRON	INTRON	DCUN1D1	ENSG00000043093.15	ENST00000292782.9:ENST00000632685.1:ENST00000460412.6:ENST00000469954.5:ENST00000492563.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	34	2	2.66433	3.6353999999999997	4.60647	0.0194358	0.0102339	0.119831	0.0850389
chr7	157341456	157341556	3455345	0	+	0.33	(0.32,0.35]	chr7	323052	10	INTRON	INTRON	DNAJB6	ENSG00000105993.15	ENST00000441561.5:ENST00000429029.6:ENST00000262177.9:ENST00000486083.6:ENST00000417758.5:ENST00000459889.5:ENST00000443280.5:ENST00000488001.5:ENST00000441291.5:ENST00000437030.5:ENST00000412557.5:ENST00000453383.5:ENST00000439402.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	50	2	2.13945	3.6353400000000002	5.13123	0.0254517	0.00394704	0.133676	0.0548259
chr2	152726071	152726170	894325	0	+	0.292929	(0.28,0.32]	chr2	99117	1	EXON_MRNA	EXON_MRNA:INTRON	ARL6IP6	ENSG00000177917.12	ENST00000690727.1:ENST00000685752.1:ENST00000688293.1:ENST00000686839.1:ENST00000689155.1:ENST00000691702.1:ENST00000691523.1:ENST00000688012.1:ENST00000687504.1:ENST00000455875.6:ENST00000692124.1:ENST00000693573.1:ENST00000692399.1:ENST00000425034.6:ENST00000686080.1:ENST00000326446.10:ENST00000463690.2:ENST00000688130.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	72	2	1.96802	3.635275	5.30253	0.0251578	0.0010319	0.12011	0.0294094
chr18	2992953	2993052	6944898	0	-	0.40404	(0.378,0.408]	chr18	686840	102	INTRON	INTRON	LPIN2	ENSG00000101577.10	ENST00000261596.8:ENST00000677752.1	protein_coding	protein_coding	protein_coding	protein_coding	3	105	2	2.98311	3.63519	4.28727	0.0013103	1.52039e-5	0.0331539	0.00293131
chr15	72099393	72099493	6218373	0	-	0.4	(0.378,0.408]	chr15	593420	524	INTRON	INTRON	MYO9A	ENSG00000066933.16	ENST00000356056.10:ENST00000564571.5:ENST00000444904.5:ENST00000566885.5:ENST00000567560.5:ENST00000424560.2:ENST00000569314.1:ENST00000564931.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	35	2	2.85854	3.635115	4.41169	0.0199606	0.0107837	0.109608	0.0920575
chr17	59773353	59773453	6643059	0	+	0.38	(0.378,0.408]	chr17	648748	2	SS3_PROX	SS3_PROX:INTRON	VMP1	ENSG00000062716.13	ENST00000593168.5:ENST00000262291.9:ENST00000587945.1:ENST00000592619.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	35	2	2.85854	3.635115	4.41169	0.0199606	0.0107837	0.109608	0.0920575
chr17	78392865	78392965	6682437	0	+	0.38	(0.378,0.408]	chr17	652792	2	SS5_PROX	SS5_PROX:INTRON	PGS1	ENSG00000087157.19	ENST00000262764.11:ENST00000589425.5:ENST00000586510.6:ENST00000586325.5:ENST00000589689.5:ENST00000589426.5:ENST00000588169.5:ENST00000592043.5:ENST00000587356.1:ENST00000585521.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	35	2	2.85854	3.635115	4.41169	0.0199606	0.0107837	0.109608	0.0920575
chr7	152036714	152036814	3449621	0	+	0.39	(0.378,0.408]	chr7	322435	86	INTRON	INTRON	GALNT11	ENSG00000178234.13	ENST00000430044.7:ENST00000482812.1:ENST00000431668.1:ENST00000446096.5:ENST00000447778.5:ENST00000423337.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	35	2	2.85854	3.635115	4.41169	0.0199606	0.0107837	0.109608	0.0920575
chr5	81681506	81681606	2665666	0	-	0.3	(0.28,0.32]	chr5	252433	308	INTRON	INTRON	SSBP2	ENSG00000145687.17	ENST00000320672.9:ENST00000615665.4:ENST00000509053.5:ENST00000514493.5:ENST00000505980.5:ENST00000515395.5:ENST00000507655.5:ENST00000507472.5:ENST00000509013.2:ENST00000504174.5:ENST00000512098.5:ENST00000506960.5:ENST00000508912.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	39	2	2.60656	3.635075	4.66359	0.0256827	0.0193496	0.133676	0.108861
chr8	43001486	43001586	3745321	0	+	0.3	(0.28,0.32]	chr8	348467	4	SS5_PROX	SS5_PROX:INTRON	HOOK3	ENSG00000168172.9	ENST00000307602.9:ENST00000526882.5:ENST00000533539.1:ENST00000524839.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	39	2	2.60656	3.635075	4.66359	0.0256827	0.0193496	0.133676	0.108861
chr9	4809085	4809184	4095027	0	+	0.30303	(0.28,0.32]	chr9	373155	155	INTRON	INTRON	RCL1	ENSG00000120158.12	ENST00000381750.9:ENST00000381732.3:ENST00000442869.5:ENST00000473230.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	39	2	2.60656	3.635075	4.66359	0.0256827	0.0193496	0.133676	0.108861
chr1	10379954	10380051	22421	0	+	0.340206	(0.32,0.35]	chr1	2354	17	UTR3	UTR3:EXON_MRNA	KIF1B	ENSG00000054523.20	ENST00000676179.1:ENST00000377086.5:ENST00000377081.5:ENST00000620295.2:ENST00000622724.3	protein_coding	protein_coding	protein_coding	protein_coding	1	43	2	2.89743	3.63506	4.37269	0.0154102	0.0127608	0.108569	0.0926667
chrX	66175397	66175497	7672797	0	+	0.38	(0.378,0.408]	chrX	785278	12	INTRON	INTRON	HEPH	ENSG00000089472.18	ENST00000519389.6:ENST00000683049.1:ENST00000458621.6:ENST00000684042.1:ENST00000343002.7:ENST00000336279.9:ENST00000441993.7:ENST00000419594.6:ENST00000682362.1:ENST00000425114.2:ENST00000682927.1:ENST00000683420.1:ENST00000684071.1:ENST00000684625.1:ENST00000684603.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	39	2	2.84663	3.63506	4.42349	0.0133954	0.00992961	0.0946278	0.0877296
chr12	112380851	112380951	5417739	0	-	0.42	(0.408,0.44]	chr12	517670	608	INTRON	INTRON	HECTD4	ENSG00000173064.14	ENST00000550722.5:ENST00000377560.9:ENST00000682272.1:ENST00000550724.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	70	2	1.78592	3.63504	5.48416	0.0142075	5.43528e-4	0.103638	0.0215026
chr21	34091473	34091573	7401272	0	+	0.3	(0.28,0.32]	chr21	753967	174	INTRON	INTRON	MRPS6:SLC5A3	ENSG00000243927.6:ENSG00000198743.7	ENST00000488492.5:ENST00000477091.5:ENST00000399312.3:ENST00000381151.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	39	2	2.53522	3.63498	4.73474	0.0310424	0.0162835	0.143457	0.101453
chrX	111748497	111748597	7702727	0	+	0.3	(0.28,0.32]	chrX	788360	32	INTRON	INTRON	ALG13	ENSG00000101901.12	ENST00000394780.8:ENST00000251943.8:ENST00000610588.4:ENST00000621367.4:ENST00000624161.3:ENST00000636363.1:ENST00000495283.5:ENST00000623144.3:ENST00000470971.5:ENST00000623148.3:ENST00000436609.5:ENST00000461669.5:ENST00000474121.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	39	2	2.53522	3.63498	4.73474	0.0310424	0.0162835	0.143457	0.101453
chr12	111597348	111597448	5413213	0	-	0.59	(0.57,1]	chr12	516942	2	SS5_PROX	SS5_PROX:INTRON	ATXN2	ENSG00000204842.18	ENST00000642389.2:ENST00000608853.5:ENST00000672613.1:ENST00000673436.1:ENST00000643669.2:ENST00000616825.4:ENST00000389153.10:ENST00000550104.5:ENST00000483311.6:ENST00000672335.1:ENST00000673557.1:ENST00000673283.1:ENST00000673449.1:ENST00000535949.5:ENST00000542287.6:ENST00000644883.1:ENST00000647305.1:ENST00000671792.1:ENST00000392645.6:ENST00000672105.1:ENST00000549455.1:ENST00000548492.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	23	2	2.66801	3.63481	4.60161	0.0169968	0.00142229	0.110899	0.0340865
chr6	43558990	43559062	3097158	0	-	0.583333	(0.57,1]	chr6	290071	2	EXON_LNCRNA	EXON_LNCRNA:SS3_PROX:INTRON	XPO5	ENSG00000124571.18	ENST00000265351.12:ENST00000496341.6:ENST00000424378.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	23	2	2.66801	3.63481	4.60161	0.0169968	0.00142229	0.110899	0.0340865
chr12	121230483	121230581	5236902	0	+	0.408163	(0.378,0.408]	chr12	497104	10	INTRON	INTRON	P2RX4	ENSG00000135124.16	ENST00000359949.11:ENST00000543430.5:ENST00000337233.9:ENST00000543984.5:ENST00000499638.6:ENST00000543318.5:ENST00000542067.5:ENST00000541187.5:ENST00000538417.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	36	2	3.05393	3.63478	4.21563	0.0315429	0.00551532	0.13151	0.0672816
chr13	51445718	51445818	5595978	0	-	0.4	(0.378,0.408]	chr13	534843	94	UTR3	UTR3:EXON_MRNA:INTRON	INTS6	ENSG00000102786.15	ENST00000398119.6:ENST00000311234.9:ENST00000469430.5:ENST00000486195.6:ENST00000491189.5:ENST00000491723.5:ENST00000461515.5:ENST00000491997.2:ENST00000488009.1:ENST00000485178.5:ENST00000483288.5:ENST00000442263.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	36	2	3.05393	3.63478	4.21563	0.0315429	0.00551532	0.13151	0.0672816
chr1	223794136	223794234	642838	0	-	0.295918	(0.28,0.32]	chr1	75882	3	INTRON	INTRON	TP53BP2	ENSG00000143514.17	ENST00000343537.12:ENST00000391878.6:ENST00000483398.5:ENST00000498843.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	41	2	3.02632	3.63476	4.2432	0.0479043	0.0071944	0.153019	0.0756118
chr13	52292548	52292646	5598504	0	-	0.397959	(0.378,0.408]	chr13	535227	6	INTRON	INTRON	TPTE2P2	ENSG00000272281.6	ENST00000605924.5:ENST00000403471.6	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	1	35	2	2.45932	3.6345	4.80968	0.0346754	0.00679828	0.148144	0.0711802
chr7	140819586	140819686	3662677	0	-	0.39	(0.378,0.408]	chr7	340085	102	INTRON	INTRON	BRAF	ENSG00000157764.14	ENST00000496384.7:ENST00000644969.2:ENST00000644120.1:ENST00000646891.1:ENST00000644905.1:ENST00000642228.1:ENST00000288602.11:ENST00000646730.1:ENST00000497784.2:ENST00000642272.1:ENST00000642808.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	35	2	2.45932	3.6345	4.80968	0.0346754	0.00679828	0.148144	0.0711802
chr21	37081397	37081496	7404902	0	+	0.333333	(0.32,0.35]	chr21	754521	76	INTRON	INTRON	TTC3	ENSG00000182670.14	ENST00000492275.6:ENST00000418766.6:ENST00000485402.5:ENST00000450533.6:ENST00000438055.5:ENST00000696812.1:ENST00000696811.1:ENST00000463216.6:ENST00000481605.6:ENST00000540756.5:ENST00000494243.5:ENST00000399010.5:ENST00000411496.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	120	2	2.72473	3.634475	4.54422	0.00433316	4.65051e-6	0.0579683	0.00144728
chr17	32478850	32478950	6598700	0	+	0.31	(0.28,0.32]	chr17	642018	2	SS3_PROX	SS3_PROX:INTRON	PSMD11	ENSG00000108671.11	ENST00000649012.1:ENST00000457654.6:ENST00000261712.8:ENST00000584340.1:ENST00000493026.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	42	2	3.1268	3.6344700000000003	4.14214	0.0579756	0.00508956	0.167723	0.0646039
chr6	18258505	18258605	3069190	0	-	0.3	(0.28,0.32]	chr6	285213	1	SS3_PROX	SS3_PROX:INTRON	DEK	ENSG00000124795.17	ENST00000652689.1:ENST00000651624.1:ENST00000515770.2:ENST00000651992.1:ENST00000507591.2:ENST00000505224.5:ENST00000244776.11:ENST00000652576.1:ENST00000503715.5:ENST00000515742.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	42	2	3.1268	3.6344700000000003	4.14214	0.0579756	0.00508956	0.167723	0.0646039
chr1	38847974	38848074	427365	0	-	0.41	(0.408,0.44]	chr1	51822	20	EXON_MRNA	EXON_MRNA:INTRON	RRAGC	ENSG00000116954.8	ENST00000373001.4:ENST00000474456.1:ENST00000493015.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	36	2	3.14706	3.6344650000000005	4.12187	0.0354689	0.00382411	0.137535	0.0562562
chr7	22986135	22986235	3501755	0	-	0.44	(0.408,0.44]	chr7	326791	4	SS3_PROX	SS3_PROX:INTRON	FAM126A	ENSG00000122591.13	ENST00000465661.2:ENST00000432176.7:ENST00000440481.6:ENST00000679826.1:ENST00000681402.1:ENST00000681237.1:ENST00000679789.1:ENST00000409923.5:ENST00000681766.1:ENST00000681079.1:ENST00000477349.5:ENST00000409763.1:ENST00000467005.6:ENST00000681468.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	36	2	3.14706	3.6344650000000005	4.12187	0.0354689	0.00382411	0.137535	0.0562562
chrX	44920684	44920784	7649077	0	+	0.42	(0.408,0.44]	chrX	782726	463	INTRON	INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000675440.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000621147.5:ENST00000475233.1:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	36	2	3.14706	3.6344650000000005	4.12187	0.0354689	0.00382411	0.137535	0.0562562
chr8	126236018	126236118	4050992	0	-	0.4	(0.378,0.408]	chr8	369353	1226	INTRON	INTRON	LINC00861	ENSG00000245164.9	ENST00000651482.1	lncRNA	lncRNA	lncRNA	lncRNA	2	52	2	2.35103	3.6343950000000005	4.91776	0.014158	0.00196368	0.0959618	0.0411469
chr1	77674286	77674386	493380	0	-	0.34	(0.32,0.35]	chr1	58315	323	INTRON	INTRON	ZZZ3	ENSG00000036549.13	ENST00000370801.8:ENST00000370798.5:ENST00000433749.5:ENST00000414381.5:ENST00000463166.5:ENST00000469944.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	55	2	2.09005	3.6341349999999997	5.17822	0.0330483	0.00115625	0.133816	0.0313436
chr19	40239680	40239771	7183272	0	-	0.362637	(0.35,0.378]	chr19	726464	2	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	AKT2	ENSG00000105221.18	ENST00000392038.7:ENST00000424901.5:ENST00000476266.5:ENST00000391844.8:ENST00000584288.5:ENST00000311278.10:ENST00000579047.5:ENST00000578615.6:ENST00000391845.6:ENST00000480878.6:ENST00000578310.1:ENST00000601166.5:ENST00000492463.6:ENST00000537834.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	196	2	2.71731	3.6341349999999997	4.55096	5.68047e-5	9.32543e-6	0.00616182	0.00235825
chr3	138692621	138692719	1830061	0	-	0.326531	(0.32,0.35]	chr3	183972	11	INTRON	INTRON	PIK3CB	ENSG00000051382.9	ENST00000674063.1:ENST00000289153.6:ENST00000477593.5:ENST00000469284.6:ENST00000544716.5:ENST00000462898.5:ENST00000481749.5:ENST00000493568.5:ENST00000473435.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	55	2	2.09005	3.6341349999999997	5.17822	0.0330483	0.00115625	0.133816	0.0313436
chr10	69191154	69191254	4445182	0	+	0.28	[0,0.28]	chr10	410106	1	SS3_PROX	SS3_PROX:INTRON	SUPV3L1	ENSG00000156502.14	ENST00000359655.9:ENST00000471069.5:ENST00000483572.5:ENST00000422378.1:ENST00000478227.5:ENST00000486661.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	57	2	2.10688	3.6340899999999996	5.1613	0.0307985	0.00866441	0.143385	0.0787025
chr1	167224948	167225048	244889	0	+	0.54	(0.515,0.57]	chr1	29245	36	INTRON	INTRON	POU2F1	ENSG00000143190.23	ENST00000559038.5:ENST00000367866.7:ENST00000557909.5:ENST00000271411.8:ENST00000429375.6:ENST00000560232.6:ENST00000442313.5:ENST00000367865.5:ENST00000492850.5:ENST00000541643.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	119	2	2.72308	3.634085	4.54509	2.69455e-4	3.26479e-6	0.0145437	0.00128387
chr6	4795403	4795503	2791052	0	+	0.31	(0.28,0.32]	chr6	263598	182	INTRON	INTRON	CDYL	ENSG00000153046.18	ENST00000328908.9:ENST00000491864.1:ENST00000440139.5:ENST00000483019.1:ENST00000397588.8:ENST00000472453.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	154	2	2.86389	3.6338749999999997	4.40386	5.73871e-4	3.79879e-5	0.0217493	0.00525714
chr3	179167878	179167977	1565996	0	+	0.393939	(0.378,0.408]	chr3	161904	178	INTRON	INTRON	PIK3CA	ENSG00000121879.6	ENST00000477735.1:ENST00000263967.4:ENST00000643187.1:ENST00000675786.1:ENST00000468036.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	38	2	3.27907	3.63387	3.98867	0.0507	0.0023379	0.156383	0.0442989
chr10	21852051	21852151	4577157	0	-	0.31	(0.28,0.32]	chr10	421900	456	INTRON	INTRON	DNAJC1	ENSG00000136770.11	ENST00000376980.8:ENST00000483085.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	71	2	1.86798	3.6338	5.39962	0.0335733	7.06751e-4	0.134145	0.0241881
chr12	94402723	94402778	5389535	0	-	0.454545	(0.44,0.476]	chr12	513856	2	SS5_PROX	SS5_PROX:INTRON	CEP83	ENSG00000173588.16	ENST00000397809.10:ENST00000339839.9:ENST00000547232.5:ENST00000547575.5:ENST00000549352.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	49	2	2.08277	3.63379	5.18481	0.0309998	6.21872e-4	0.13151	0.0223951
chr9	70330543	70330643	4139902	0	+	0.45	(0.44,0.476]	chr9	377318	60	INTRON	INTRON	SMC5	ENSG00000198887.9	ENST00000361138.7:ENST00000475540.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	49	2	2.08277	3.63379	5.18481	0.0309998	6.21872e-4	0.13151	0.0223951
chr4	39720250	39720349	1953213	0	+	0.363636	(0.35,0.378]	chr4	195630	215	INTRON	INTRON	UBE2K	ENSG00000078140.14	ENST00000510934.5:ENST00000261427.10:ENST00000438068.6:ENST00000513231.5:ENST00000503368.5:ENST00000445950.2:ENST00000510719.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	59	2	2.28182	3.6337150000000005	4.98561	0.00637232	0.00474226	0.0724821	0.0600445
chr1	28740598	28740698	58382	0	+	0.3	(0.28,0.32]	chr1	7596	2	SS5_PROX	SS5_PROX:INTRON	YTHDF2	ENSG00000198492.16	ENST00000542507.5:ENST00000474884.5:ENST00000373812.8:ENST00000541996.5:ENST00000478283.5:ENST00000496288.5:ENST00000476976.1:ENST00000475796.5:ENST00000468863.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	59	2	2.18092	3.6335699999999997	5.08622	0.0271832	0.00227525	0.123904	0.0437013
chr10	42811804	42811904	4428325	0	+	0.39	(0.378,0.408]	chr10	408133	92	INTRON	INTRON	BMS1	ENSG00000165733.8	ENST00000374518.6	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	2.26252	3.6335550000000003	5.00459	0.056222	0.00371142	0.18407	0.0535094
chr2	222619244	222619344	1332738	0	-	0.4	(0.378,0.408]	chr2	139841	2	SS5_PROX	SS5_PROX:INTRON	FARSB	ENSG00000116120.11	ENST00000281828.8	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	2.26252	3.6335550000000003	5.00459	0.056222	0.00371142	0.18407	0.0535094
chr4	6830378	6830478	1922066	0	+	0.42	(0.408,0.44]	chr4	192999	53	INTRON	INTRON	KIAA0232	ENSG00000170871.12	ENST00000307659.6:ENST00000425103.5	protein_coding	protein_coding	protein_coding	protein_coding	3	101	2	3.50819	3.633505	3.75882	4.04678e-4	5.7683e-5	0.0185763	0.00620725
chr10	32014908	32015008	4590383	0	-	0.5	(0.476,0.515]	chr10	423184	30	INTRON	INTRON	KIF5B	ENSG00000170759.11	ENST00000302418.5	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	2.65268	3.63335	4.61402	0.0201975	0.00947755	0.121243	0.0817766
chr14	63639900	63639999	5908339	0	-	0.494949	(0.476,0.515]	chr14	561161	145	INTRON	INTRON	WDR89	ENSG00000140006.12	ENST00000620954.2:ENST00000394942.2:ENST00000267522.7:ENST00000554717.1	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	2.65268	3.63335	4.61402	0.0201975	0.00947755	0.121243	0.0817766
chr9	130097860	130097960	4211404	0	+	0.5	(0.476,0.515]	chr9	386041	51	INTRON	INTRON	GPR107	ENSG00000148358.20	ENST00000372406.5:ENST00000372410.7:ENST00000347136.11:ENST00000493417.5:ENST00000610997.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	34	2	2.65268	3.63335	4.61402	0.0201975	0.00947755	0.121243	0.0817766
chr7	92250616	92250716	3352838	0	+	0.32	(0.28,0.32]	chr7	312479	37	INTRON	INTRON	ANKIB1	ENSG00000001629.10	ENST00000265742.8	protein_coding	protein_coding	protein_coding	protein_coding	2	58	2	1.86684	3.6332299999999997	5.39962	0.0605813	7.06751e-4	0.171122	0.0241881
chr14	99428615	99428715	5966701	0	-	0.46	(0.44,0.476]	chr14	566915	143	INTRON	INTRON	SETD3	ENSG00000183576.13	ENST00000331768.10:ENST00000446066.5:ENST00000453764.5:ENST00000329331.7:ENST00000630307.2:ENST00000436070.6:ENST00000357563.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	34	2	2.74372	3.63321	4.5227	0.0153007	0.0128818	0.108569	0.0926667
chr17	47481091	47481191	6789709	0	-	0.46	(0.44,0.476]	chr17	669659	239	INTRON	INTRON	MRPL45P2	ENSG00000228782.8	ENST00000425159.7:ENST00000575291.5:ENST00000572695.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	1	34	2	2.74372	3.63321	4.5227	0.0153007	0.0128818	0.108569	0.0926667
chr2	26349584	26349683	715045	0	+	0.444444	(0.44,0.476]	chr2	82572	28	INTRON	INTRON	SELENOI	ENSG00000138018.19	ENST00000442141.5:ENST00000260585.12:ENST00000447170.1	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	2.74372	3.63321	4.5227	0.0153007	0.0128818	0.108569	0.0926667
chr8	67147889	67147988	3777497	0	+	0.353535	(0.35,0.378]	chr8	350387	87	INTRON	INTRON	CSPP1	ENSG00000104218.16	ENST00000676113.1:ENST00000675306.2:ENST00000678156.1:ENST00000262210.11:ENST00000678017.1:ENST00000675869.1:ENST00000678542.1:ENST00000677619.1:ENST00000676605.1:ENST00000676471.1:ENST00000677256.1:ENST00000676847.1:ENST00000677009.1:ENST00000676317.1:ENST00000677592.1:ENST00000676573.1:ENST00000678318.1:ENST00000677473.1:ENST00000674993.1:ENST00000679226.1:ENST00000676882.1:ENST00000675955.1:ENST00000677430.1:ENST00000677455.1:ENST00000678616.1:ENST00000678362.1:ENST00000679112.1:ENST00000678645.1:ENST00000676567.1:ENST00000677845.1:ENST00000519163.6:ENST00000676858.1:ENST00000678747.1:ENST00000519668.1:ENST00000676697.1:ENST00000677855.1:ENST00000676695.1:ENST00000676534.1:ENST00000678138.1:ENST00000678807.1:ENST00000677052.1:ENST00000679274.1:ENST00000679042.1:ENST00000678635.1:ENST00000676804.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	48	2	2.34278	3.633165	4.92355	0.0129593	0.00573514	0.0991015	0.0657377
chr1	222714549	222714644	319919	0	+	0.410526	(0.408,0.44]	chr1	36765	7	INTRON	INTRON	BROX	ENSG00000162819.12	ENST00000612948.4:ENST00000340934.10:ENST00000537020.5:ENST00000539697.5:ENST00000426638.1:ENST00000473962.5:ENST00000469236.5:ENST00000489191.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	50	2	2.26792	3.6331450000000003	4.99837	0.0179973	0.00131369	0.106756	0.0333932
chr9	97656876	97656973	4172851	0	+	0.42268	(0.408,0.44]	chr9	380206	4	INTRON	INTRON	NCBP1	ENSG00000136937.13	ENST00000375147.8	protein_coding	protein_coding	protein_coding	protein_coding	2	50	2	2.26792	3.6331450000000003	4.99837	0.0179973	0.00131369	0.106756	0.0333932
chrX	24779051	24779151	7632568	0	+	0.42	(0.408,0.44]	chrX	781731	33	INTRON	INTRON	POLA1	ENSG00000101868.13	ENST00000672178.1:ENST00000379068.8:ENST00000379059.7:ENST00000611764.2:ENST00000480125.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	50	2	2.26792	3.6331450000000003	4.99837	0.0179973	0.00131369	0.106756	0.0333932
chr10	42805014	42805114	4428257	0	+	0.36	(0.35,0.378]	chr10	408133	24	INTRON	INTRON	BMS1	ENSG00000165733.8	ENST00000374518.6	protein_coding	protein_coding	protein_coding	protein_coding	3	59	2	1.65083	3.6331350000000002	5.61544	0.0521072	5.06729e-4	0.177022	0.020816
chr11	5664034	5664103	4899874	0	-	0.507246	(0.476,0.515]	chr11	459233	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	ENSG00000239920:TRIM5	ENSG00000239920.2:ENSG00000132256.20	ENST00000380259.7:ENST00000642298.1:ENST00000380034.8:ENST00000380027.5:ENST00000433961.5:ENST00000684655.1:ENST00000396847.7:ENST00000682968.1:ENST00000438025.5:ENST00000483835.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	50	2	1.72558	3.633095	5.54061	0.0767648	1.30462e-4	0.196164	0.00983066
chr16	29510192	29510292	6470667	0	-	0.43	(0.408,0.44]	chr16	625147	43	INTRON	INTRON	ENSG00000288632	ENSG00000288632.1	ENST00000675579.1	lncRNA	lncRNA	lncRNA	lncRNA	2	77	2	3.50731	3.633065	3.75882	8.5918e-4	4.04678e-4	0.0265787	0.0185763
chr6	157852669	157852769	3016057	0	+	0.48	(0.476,0.515]	chr6	281353	226	INTRON	INTRON	SNX9	ENSG00000130340.17	ENST00000614703.4:ENST00000614800.4:ENST00000680863.1:ENST00000679814.1:ENST00000680464.1:ENST00000681186.1:ENST00000679732.1:ENST00000681183.1:ENST00000681534.1:ENST00000681651.1:ENST00000680089.1:ENST00000680078.1:ENST00000680974.1:ENST00000680095.1:ENST00000680015.1:ENST00000681138.1:ENST00000392185.8:ENST00000679790.1:ENST00000680495.1:ENST00000679691.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	56	2	2.29359	3.63306	4.97253	0.00584957	0.00311573	0.0689807	0.0498063
chr2	96300697	96300797	1180491	0	-	0.44	(0.408,0.44]	chr2	126352	3	SS5_PROX	SS5_PROX:INTRON	SNRNP200	ENSG00000144028.15	ENST00000323853.10:ENST00000652267.1	protein_coding	protein_coding	protein_coding	protein_coding	5	141	2	2.41003	3.633015	4.856	0.00211327	3.34801e-7	0.0415897	2.93494e-4
chr1	229292787	229292886	333493	0	+	0.444444	(0.44,0.476]	chr1	38826	36	INTRON	INTRON	RAB4A	ENSG00000168118.12	ENST00000618010.4:ENST00000366690.5:ENST00000473894.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	34	2	2.58033	3.632985	4.68564	0.0247511	0.00816201	0.131869	0.0766625
chr12	55919827	55919926	5333157	0	-	0.444444	(0.44,0.476]	chr12	509228	51	INTRON	INTRON	PYM1	ENSG00000170473.17	ENST00000408946.7:ENST00000398213.4:ENST00000302533.6:ENST00000557259.5:ENST00000547925.1:ENST00000549939.1:ENST00000454792.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	34	2	2.58033	3.632985	4.68564	0.0247511	0.00816201	0.131869	0.0766625
chr5	177001699	177001798	2776888	0	-	0.454545	(0.44,0.476]	chr5	261590	2	SS3_PROX	SS3_PROX:SS5_PROX:INTRON	UIMC1	ENSG00000087206.17	ENST00000377227.8:ENST00000511320.6:ENST00000506128.5:ENST00000512031.5:ENST00000509236.5:ENST00000417486.6:ENST00000515488.1:ENST00000507513.1:ENST00000428382.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	34	2	2.58033	3.632985	4.68564	0.0247511	0.00816201	0.131869	0.0766625
chr8	102859588	102859688	4013194	0	-	0.46	(0.44,0.476]	chr8	367345	4	SS3_PROX	SS3_PROX:INTRON	AZIN1	ENSG00000155096.15	ENST00000681985.1:ENST00000684566.1:ENST00000682725.1:ENST00000337198.10:ENST00000684459.1:ENST00000683787.1:ENST00000682014.1:ENST00000682969.1:ENST00000684721.1:ENST00000683965.1:ENST00000347770.8:ENST00000520402.5:ENST00000518353.5:ENST00000517581.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	34	2	2.58033	3.632985	4.68564	0.0247511	0.00816201	0.131869	0.0766625
chr8	129983374	129983474	4063601	0	-	0.45	(0.44,0.476]	chr8	369844	120	INTRON	INTRON	CYRIB	ENSG00000153310.21	ENST00000694912.1:ENST00000523288.5:ENST00000519110.5:ENST00000401979.6:ENST00000523509.5:ENST00000517654.5:ENST00000518879.5:ENST00000522702.5:ENST00000521223.5:ENST00000518283.5:ENST00000523993.5:ENST00000519020.5:ENST00000518167.5:ENST00000522361.1:ENST00000523514.1:ENST00000518285.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	34	2	2.58033	3.632985	4.68564	0.0247511	0.00816201	0.131869	0.0766625
chr3	75731559	75731659	1747837	0	-	0.37	(0.35,0.378]	chr3	177526	1	SS5_PROX	SS5_PROX:INTRON	ZNF717	ENSG00000227124.11	ENST00000648506.1:ENST00000491507.1:ENST00000477374.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	48	2	2.10859	3.63291	5.15723	0.0272722	0.00272706	0.136494	0.0467523
chr17	22168647	22168747	6579350	0	+	0.36	(0.35,0.378]	chr17	639556	774	INTRON	INTRON	UBBP4	ENSG00000263563.7	ENST00000648259.1:ENST00000688301.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	2	82	2	3.2953	3.6328500000000004	3.9704	0.0031465	1.01653e-4	0.0500431	0.00850967
chr2	53704117	53704216	1117869	0	-	0.454545	(0.44,0.476]	chr2	119764	32	INTRON	INTRON	ASB3	ENSG00000115239.24	ENST00000406053.5:ENST00000263634.8:ENST00000406625.6:ENST00000482829.5:ENST00000394717.3:ENST00000406687.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	75	2	3.4718	3.632835	3.79387	0.00136358	2.19099e-4	0.0336321	0.0129737
chr12	123744200	123744268	5244410	0	+	0.426471	(0.408,0.44]	chr12	498609	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	ATP6V0A2	ENSG00000185344.15	ENST00000330342.8:ENST00000675344.1:ENST00000540368.6:ENST00000504192.2:ENST00000674794.1:ENST00000545059.5:ENST00000536426.1:ENST00000675260.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	34	2	2.66579	3.63279	4.59979	0.019342	0.0109537	0.119831	0.0873034
chr17	81925763	81925860	6850531	0	-	0.43299	(0.408,0.44]	chr17	678530	20	INTRON	INTRON	MAFG	ENSG00000197063.11	ENST00000357736.9:ENST00000574686.1	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	2.66579	3.63279	4.59979	0.019342	0.0109537	0.119831	0.0873034
chr2	9528641	9528735	1064210	0	-	0.414894	(0.408,0.44]	chr2	113523	3	INTRON	INTRON	ADAM17	ENSG00000151694.14	ENST00000310823.8:ENST00000648548.1:ENST00000649227.1:ENST00000648857.1:ENST00000647979.1:ENST00000647610.1:ENST00000650116.1:ENST00000649686.1:ENST00000647622.1:ENST00000649972.1:ENST00000650241.1:ENST00000618923.2:ENST00000478059.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	34	2	2.66579	3.63279	4.59979	0.019342	0.0109537	0.119831	0.0873034
chr5	176482655	176482755	2552516	0	+	0.42	(0.408,0.44]	chr5	243676	30	INTRON	INTRON	FAF2	ENSG00000113194.13	ENST00000510730.5:ENST00000261942.7:ENST00000510446.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	34	2	2.66579	3.63279	4.59979	0.019342	0.0109537	0.119831	0.0873034
chr6	15326624	15326724	2823753	0	+	0.44	(0.408,0.44]	chr6	265192	117	INTRON	INTRON	JARID2	ENSG00000008083.14	ENST00000341776.7:ENST00000397311.4	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	2.66579	3.63279	4.59979	0.019342	0.0109537	0.119831	0.0873034
chr9	69072762	69072860	4137509	0	+	0.428571	(0.408,0.44]	chr9	377046	1	UTR3	UTR3:EXON_MRNA	FXN	ENSG00000165060.15	ENST00000644653.1:ENST00000484259.3:ENST00000396366.6:ENST00000377270.8:ENST00000498653.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	34	2	2.66579	3.63279	4.59979	0.019342	0.0109537	0.119831	0.0873034
chr10	68590109	68590208	4441184	0	+	0.484848	(0.476,0.515]	chr10	409524	155	INTRON	INTRON	TET1	ENSG00000138336.9	ENST00000373644.5	protein_coding	protein_coding	protein_coding	protein_coding	3	56	2	1.68092	3.6325849999999997	5.58425	0.0474026	2.97744e-4	0.169265	0.0160246
chr17	35616079	35616179	6599829	0	+	0.13	[0,0.28]	chr17	642258	73	INTRON	INTRON	AP2B1	ENSG00000006125.18	ENST00000616784.4:ENST00000621914.4:ENST00000620039.4:ENST00000616681.4:ENST00000621668.4:ENST00000610402.5:ENST00000612035.4:ENST00000614600.4:ENST00000612116.5:ENST00000618940.4:ENST00000591561.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	42	2	2.5055	3.6325700000000003	4.75964	0.0359431	0.0232081	0.152322	0.118148
chr20	53592955	53593055	7358476	0	-	0.27	[0,0.28]	chr20	750309	94	INTRON	INTRON	ZNF217	ENSG00000171940.14	ENST00000371471.7:ENST00000431687.5:ENST00000540425.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	42	2	2.5055	3.6325700000000003	4.75964	0.0359431	0.0232081	0.152322	0.118148
chr4	87082520	87082620	1995279	0	+	0.24	[0,0.28]	chr4	199057	324	INTRON	INTRON	AFF1	ENSG00000172493.23	ENST00000395146.9:ENST00000507468.5:ENST00000674009.1:ENST00000503477.5:ENST00000544085.6:ENST00000307808.10:ENST00000511722.5:ENST00000514970.2	protein_coding	protein_coding	protein_coding	protein_coding	1	42	2	2.5055	3.6325700000000003	4.75964	0.0359431	0.0232081	0.152322	0.118148
chr5	126791321	126791420	2479317	0	+	0.272727	[0,0.28]	chr5	236699	131	INTRON	INTRON	LMNB1	ENSG00000113368.12	ENST00000460265.5:ENST00000261366.10:ENST00000504788.5:ENST00000472034.5:ENST00000492190.5:ENST00000395354.1:ENST00000463908.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	42	2	2.5055	3.6325700000000003	4.75964	0.0359431	0.0232081	0.152322	0.118148
chr2	96862372	96862467	1181877	0	-	0.442105	(0.44,0.476]	chr2	126653	6	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	SEMA4C	ENSG00000168758.11	ENST00000305476.10:ENST00000474420.1:ENST00000482925.5:ENST00000467747.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	64	2	2.12136	3.63257	5.14378	0.00591413	0.00184943	0.0694038	0.0388609
chr6	13632932	13633021	3058425	0	-	0.247191	[0,0.28]	chr6	284487	3	SS3_PROX	SS3_PROX:INTRON	RANBP9	ENSG00000010017.13	ENST00000011619.6	protein_coding	protein_coding	protein_coding	protein_coding	2	57	2	2.15457	3.6324500000000004	5.11033	0.0269306	0.00991388	0.135288	0.0838372
chr11	119208508	119208608	4874892	0	+	0.52	(0.515,0.57]	chr11	455668	15	INTRON	INTRON	CBL	ENSG00000110395.7	ENST00000634586.1:ENST00000634840.1:ENST00000264033.6:ENST00000637974.1	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	2.76354	3.6322799999999997	4.50102	0.0147344	0.00510768	0.0983813	0.0646039
chr12	108529741	108529841	5405423	0	-	0.53	(0.515,0.57]	chr12	515841	2	SS5_PROX	SS5_PROX:INTRON	SART3	ENSG00000075856.12	ENST00000546815.6:ENST00000651280.1:ENST00000228284.8:ENST00000546728.5:ENST00000431469.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	33	2	2.76354	3.6322799999999997	4.50102	0.0147344	0.00510768	0.0983813	0.0646039
chr9	78014518	78014618	4271775	0	-	0.54	(0.515,0.57]	chr9	392880	918	INTRON	INTRON	GNAQ	ENSG00000156052.11	ENST00000286548.9:ENST00000411677.1	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	2.76354	3.6322799999999997	4.50102	0.0147344	0.00510768	0.0983813	0.0646039
chrX	18952293	18952393	7771708	0	-	0.34	(0.32,0.35]	chrX	794391	4	SS5_PROX	SS5_PROX:INTRON	PHKA2	ENSG00000044446.12	ENST00000379942.5	protein_coding	protein_coding	protein_coding	protein_coding	2	50	2	2.30476	3.632235	4.95971	0.0151817	0.00663522	0.108535	0.0703181
chr17	82916317	82916415	6695894	0	+	0.581633	(0.57,1]	chr17	655036	23	INTRON	INTRON	TBCD	ENSG00000141556.22	ENST00000682479.1:ENST00000682722.1:ENST00000684464.1:ENST00000684544.1:ENST00000681983.1:ENST00000684361.1:ENST00000683184.1:ENST00000683282.1:ENST00000684408.1:ENST00000355528.9:ENST00000683444.1:ENST00000684776.1:ENST00000683041.1:ENST00000684760.1:ENST00000684349.1:ENST00000682213.1:ENST00000539345.6:ENST00000684000.1:ENST00000684188.1:ENST00000684429.1:ENST00000682610.1:ENST00000683821.1:ENST00000682654.1:ENST00000576160.6:ENST00000571712.5:ENST00000576996.5:ENST00000683584.1:ENST00000682099.1:ENST00000684559.1:ENST00000576760.5:ENST00000683839.1:ENST00000574975.5:ENST00000572953.5:ENST00000571796.5:ENST00000682315.1:ENST00000574422.1:ENST00000576677.6:ENST00000571618.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	55	2	3.19707	3.632035	4.067	2.16062e-4	2.30559e-5	0.0129138	0.00391568
chr8	22605227	22605322	3714347	0	+	0.6	(0.57,1]	chr8	344966	3	UTR5	UTR5:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CCAR2	ENSG00000158941.17	ENST00000308511.9:ENST00000523801.5:ENST00000521301.5:ENST00000389279.7	protein_coding	protein_coding	protein_coding	protein_coding	3	55	2	3.19707	3.632035	4.067	2.16062e-4	2.30559e-5	0.0129138	0.00391568
chr10	35346892	35346991	4424606	0	+	0.333333	(0.32,0.35]	chr10	407899	93	INTRON	INTRON	CCNY	ENSG00000108100.18	ENST00000374706.5:ENST00000490012.6:ENST00000493157.6:ENST00000374704.8:ENST00000265375.13:ENST00000339497.7:ENST00000492478.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	61	2	2.18777	3.6320300000000003	5.07629	0.00951422	0.00468114	0.0863913	0.0600108
chr15	89258003	89258103	6095872	0	+	0.34	(0.32,0.35]	chr15	580086	28	INTRON	INTRON	FANCI	ENSG00000140525.20	ENST00000674831.1:ENST00000300027.12:ENST00000568670.5:ENST00000567891.5:ENST00000310775.12:ENST00000696717.1:ENST00000676003.1:ENST00000565255.5:ENST00000564920.5:ENST00000696718.1:ENST00000447611.6:ENST00000570110.1:ENST00000696719.1:ENST00000567996.5:ENST00000563250.5:ENST00000565522.5:ENST00000564636.1:ENST00000696720.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	50	2	2.07985	3.6319999999999997	5.18415	0.0303092	0.00333629	0.143025	0.0512081
chr11	57805381	57805460	4793584	0	+	0.506329	(0.476,0.515]	chr11	443776	1	SS3_PROX	SS3_PROX:INTRON	ENSG00000288534:CTNND1	ENSG00000288534.1:ENSG00000198561.16	ENST00000673781.1:ENST00000673810.1:ENST00000674116.1:ENST00000674060.1:ENST00000524630.5:ENST00000529919.5:ENST00000682741.1:ENST00000358694.10:ENST00000361332.8:ENST00000361391.10:ENST00000361796.9:ENST00000415361.6:ENST00000426142.6:ENST00000428599.6:ENST00000525902.5:ENST00000526357.5:ENST00000526772.5:ENST00000527467.5:ENST00000528232.5:ENST00000528621.5:ENST00000529526.5:ENST00000529873.5:ENST00000529986.5:ENST00000530094.5:ENST00000530748.5:ENST00000531014.5:ENST00000532245.5:ENST00000532463.5:ENST00000532649.5:ENST00000532787.5:ENST00000532844.5:ENST00000533667.5:ENST00000534579.5:ENST00000399050.10:ENST00000526938.5:ENST00000531007.2:ENST00000674015.1:ENST00000673826.1:ENST00000673683.1:ENST00000674106.1:ENST00000681984.1:ENST00000683906.1:ENST00000673661.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	36	2	2.48527	3.631915	4.77856	0.03496	0.00305743	0.13747500000000001	0.0509893
chr14	49797565	49797665	5886679	0	-	0.5	(0.476,0.515]	chr14	558672	1	SS3_PROX	SS3_PROX:INTRON	NEMF	ENSG00000165525.18	ENST00000298310.10:ENST00000556691.5:ENST00000556074.5:ENST00000556925.5:ENST00000555970.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	36	2	2.48527	3.631915	4.77856	0.03496	0.00305743	0.13747500000000001	0.0509893
chr6	170538633	170538733	3267529	0	-	0.48	(0.476,0.515]	chr6	303367	9	INTRON	INTRON	PSMB1	ENSG00000008018.9	ENST00000262193.7:ENST00000462957.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	36	2	2.48527	3.631915	4.77856	0.03496	0.00305743	0.13747500000000001	0.0509893
chr17	59915003	59915103	6643990	0	+	0.62	(0.57,1]	chr17	648826	3	SS5_PROX	SS5_PROX:INTRON	RPS6KB1	ENSG00000108443.14	ENST00000393021.7:ENST00000472940.5:ENST00000225577.9:ENST00000443572.6:ENST00000489824.1:ENST00000406116.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	42	2	3.56369	3.631775	3.69986	4.26536e-4	1.9698e-4	0.0189958	0.0122531
chr22	27905764	27905864	7565733	0	-	0.42	(0.408,0.44]	chr22	774128	75	INTRON	INTRON	PITPNB	ENSG00000180957.19	ENST00000335272.10:ENST00000320996.14:ENST00000634017.1:ENST00000415296.5:ENST00000436663.1:ENST00000460566.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	37	2	3.25948	3.631665	4.00385	0.0454568	0.00246454	0.149888	0.0459102
chr1	3829132	3829198	364226	0	-	0.318182	(0.28,0.32]	chr1	42687	1	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CEP104	ENSG00000116198.14	ENST00000674558.1:ENST00000676052.1:ENST00000378230.8:ENST00000674623.1:ENST00000675200.1:ENST00000674985.1:ENST00000674879.1:ENST00000675677.1:ENST00000675750.1:ENST00000676009.1:ENST00000675108.1:ENST00000675666.1:ENST00000675966.1:ENST00000675375.1:ENST00000674544.1:ENST00000675334.1:ENST00000428079.6:ENST00000438539.6:ENST00000461667.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	39	2	2.67453	3.63164	4.58875	0.0230574	0.021289	0.123318	0.118056
chr1	206606775	206606871	624813	0	-	0.3125	(0.28,0.32]	chr1	74407	9	INTRON	INTRON	EIF2D	ENSG00000143486.16	ENST00000271764.7:ENST00000367114.7:ENST00000613435.1:ENST00000437518.1:ENST00000461334.1:ENST00000620382.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	39	2	2.67453	3.63164	4.58875	0.0230574	0.021289	0.123318	0.118056
chr2	15545324	15545424	1073004	0	-	0.3	(0.28,0.32]	chr2	114459	56	INTRON	INTRON	NBAS	ENSG00000151779.13	ENST00000281513.10	protein_coding	protein_coding	protein_coding	protein_coding	1	39	2	2.67453	3.63164	4.58875	0.0230574	0.021289	0.123318	0.118056
chr5	94695021	94695116	2429700	0	+	0.294737	(0.28,0.32]	chr5	233486	3	CDS	CDS:EXON_MRNA:INTRON	SLF1	ENSG00000133302.13	ENST00000265140.10:ENST00000450932.2:ENST00000493934.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	39	2	2.67453	3.63164	4.58875	0.0230574	0.021289	0.123318	0.118056
chr5	140504420	140504520	2503878	0	+	0.31	(0.28,0.32]	chr5	239257	2	SS3_PROX	SS3_PROX:INTRON	ANKHD1	ENSG00000131503.21	ENST00000297183.10:ENST00000360839.7:ENST00000421134.5:ENST00000246149.10:ENST00000412116.5	protein_coding	protein_coding	protein_coding	protein_coding	1	39	2	2.67453	3.63164	4.58875	0.0230574	0.021289	0.123318	0.118056
chr9	78305040	78305140	4148000	0	+	0.32	(0.28,0.32]	chr9	378271	1	SS5_PROX	SS5_PROX:INTRON	PSAT1	ENSG00000135069.14	ENST00000376588.4:ENST00000347159.6	protein_coding	protein_coding	protein_coding	protein_coding	1	39	2	2.67453	3.63164	4.58875	0.0230574	0.021289	0.123318	0.118056
chr1	20762403	20762502	389610	0	-	0.373737	(0.35,0.378]	chr1	46537	48	INTRON	INTRON	HP1BP3	ENSG00000127483.19	ENST00000438032.6:ENST00000312239.10:ENST00000375003.6:ENST00000419948.5:ENST00000424732.5	protein_coding	protein_coding	protein_coding	protein_coding	6	219	2	3.05279	3.63161	4.21043	2.81254e-4	8.01406e-8	0.015437	1.22981e-4
chr7	102044142	102044242	3368636	0	+	0.44	(0.408,0.44]	chr7	315239	156	INTRON	INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000497815.5:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000558469.5:ENST00000560541.5:ENST00000558836.5:ENST00000606749.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	60	2	1.96534	3.631565	5.29779	0.0216499	3.80479e-4	0.11491	0.0176313
chr1	19178243	19178319	386496	0	-	0.289474	(0.28,0.32]	chr1	46057	1	INTRON	INTRON	UBR4	ENSG00000127481.15	ENST00000375254.8	protein_coding	protein_coding	protein_coding	protein_coding	1	39	2	2.46018	3.6313649999999997	4.80255	0.0375904	0.0137406	0.156054	0.0949306
chr1	77626049	77626149	492891	0	-	0.3	(0.28,0.32]	chr1	58292	410	INTRON	INTRON	ZZZ3	ENSG00000036549.13	ENST00000370801.8:ENST00000481346.5:ENST00000476275.5:ENST00000370798.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	39	2	2.46018	3.6313649999999997	4.80255	0.0375904	0.0137406	0.156054	0.0949306
chr21	29334557	29334656	7392712	0	+	0.313131	(0.28,0.32]	chr21	753205	45	INTRON	INTRON	BACH1	ENSG00000156273.16	ENST00000286800.8:ENST00000399921.5:ENST00000422809.5:ENST00000468059.1	protein_coding	protein_coding	protein_coding	protein_coding	1	39	2	2.46018	3.6313649999999997	4.80255	0.0375904	0.0137406	0.156054	0.0949306
chr21	36887360	36887460	7460767	0	-	0.29	(0.28,0.32]	chr21	760114	1197	INTRON	INTRON	HLCS	ENSG00000159267.17	ENST00000674895.3:ENST00000336648.8:ENST00000612277.4:ENST00000399120.5:ENST00000675307.1:ENST00000675057.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	39	2	2.46018	3.6313649999999997	4.80255	0.0375904	0.0137406	0.156054	0.0949306
chr4	56492466	56492565	1963186	0	+	0.30303	(0.28,0.32]	chr4	197005	5	INTRON	INTRON	SRP72	ENSG00000174780.17	ENST00000642900.1:ENST00000510663.6:ENST00000647432.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	39	2	2.46018	3.6313649999999997	4.80255	0.0375904	0.0137406	0.156054	0.0949306
chr5	66161213	66161312	2372663	0	+	0.30303	(0.28,0.32]	chr5	228668	15	INTRON	INTRON	SREK1	ENSG00000153914.16	ENST00000521691.5:ENST00000334121.11:ENST00000520953.5:ENST00000522912.5:ENST00000524111.5:ENST00000380918.7:ENST00000284041.7:ENST00000518110.1:ENST00000520580.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	39	2	2.46018	3.6313649999999997	4.80255	0.0375904	0.0137406	0.156054	0.0949306
chr6	167012255	167012349	3033498	0	+	0.308511	(0.28,0.32]	chr6	282650	7	INTRON	INTRON	CEP43	ENSG00000213066.13	ENST00000622353.4:ENST00000366847.9:ENST00000349556.4	protein_coding	protein_coding	protein_coding	protein_coding	1	39	2	2.46018	3.6313649999999997	4.80255	0.0375904	0.0137406	0.156054	0.0949306
chr7	113117883	113117975	3626170	0	-	0.304348	(0.28,0.32]	chr7	337290	4	EXON_MRNA	EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SMIM30	ENSG00000214194.9	ENST00000397764.8:ENST00000441359.1:ENST00000413744.1:ENST00000439551.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	39	2	2.46018	3.6313649999999997	4.80255	0.0375904	0.0137406	0.156054	0.0949306
chr8	73847170	73847270	3971943	0	-	0.31	(0.28,0.32]	chr8	364247	163	INTRON	INTRON	ENSG00000258677:UBE2W	ENSG00000258677.2:ENSG00000104343.21	ENST00000358757.5:ENST00000602593.6:ENST00000517608.5:ENST00000650817.1:ENST00000422906.6:ENST00000419880.7:ENST00000651945.1:ENST00000519277.5:ENST00000519255.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	39	2	2.46018	3.6313649999999997	4.80255	0.0375904	0.0137406	0.156054	0.0949306
chr15	55370295	55370394	6181518	0	-	0.323232	(0.32,0.35]	chr15	589222	46	INTRON	INTRON	CCPG1	ENSG00000260916.8	ENST00000442196.8:ENST00000310958.10:ENST00000425574.7:ENST00000568808.5:ENST00000568372.5:ENST00000569205.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	60	2	1.93031	3.631245	5.33218	0.0231421	0.00204346	0.126939	0.04086
chr11	3761714	3761812	4894806	0	-	0.44898	(0.44,0.476]	chr11	458884	7	INTRON	INTRON	NUP98	ENSG00000110713.17	ENST00000359171.8:ENST00000324932.12:ENST00000650171.1:ENST00000355260.7:ENST00000397004.8:ENST00000397007.8:ENST00000529379.1:ENST00000397013.2:ENST00000461047.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	78	2	3.07862	3.6311649999999998	4.18371	0.0060153	2.6221e-5	0.0674604	0.00402631
chr11	64159242	64159342	4964568	0	-	0.5	(0.476,0.515]	chr11	467287	65	INTRON	INTRON	MACROD1	ENSG00000133315.12	ENST00000255681.7:ENST00000675777.1:ENST00000545464.5:ENST00000542359.5:ENST00000538595.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	34	2	2.73205	3.6311400000000003	4.53023	0.0159328	0.0119748	0.109464	0.0899583
chr14	34440802	34440902	5865923	0	-	0.5	(0.476,0.515]	chr14	557089	51	INTRON	INTRON	EGLN3:SPTSSA	ENSG00000129521.15:ENSG00000165389.7	ENST00000551935.5:ENST00000298130.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	34	2	2.73205	3.6311400000000003	4.53023	0.0159328	0.0119748	0.109464	0.0899583
chr7	6218932	6219032	3476847	0	-	0.49	(0.476,0.515]	chr7	325332	63	INTRON	INTRON	CYTH3	ENSG00000008256.16	ENST00000396741.3:ENST00000350796.8:ENST00000482460.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	34	2	2.73205	3.6311400000000003	4.53023	0.0159328	0.0119748	0.109464	0.0899583
chr1	96745538	96745637	168179	0	+	0.232323	[0,0.28]	chr1	18215	216	INTRON	INTRON	PTBP2	ENSG00000117569.19	ENST00000482253.5:ENST00000675735.1:ENST00000609116.5:ENST00000674951.1:ENST00000675080.1:ENST00000426398.3:ENST00000460706.5:ENST00000370197.5:ENST00000370198.5:ENST00000476419.5:ENST00000676292.1:ENST00000676096.1:ENST00000675365.1:ENST00000674579.1:ENST00000675401.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	42	2	2.57033	3.63112	4.69191	0.0305273	0.0269474	0.143385	0.123442
chr1	160278178	160278276	571628	0	-	0.214286	[0,0.28]	chr1	69184	15	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	PEX19	ENSG00000162735.19	ENST00000368072.10:ENST00000472750.5:ENST00000467711.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	42	2	2.57033	3.63112	4.69191	0.0305273	0.0269474	0.143385	0.123442
chr11	58588676	58588776	4793839	0	+	0.22	[0,0.28]	chr11	443838	34	INTRON	INTRON	ZFP91	ENSG00000186660.15	ENST00000316059.7	protein_coding	protein_coding	protein_coding	protein_coding	1	42	2	2.57033	3.63112	4.69191	0.0305273	0.0269474	0.143385	0.123442
chr12	91603027	91603127	5385247	0	-	0.26	[0,0.28]	chr12	513485	958	INTRON	INTRON	ENSG00000289605	ENSG00000289605.1	ENST00000685093.1	lncRNA	lncRNA	lncRNA	lncRNA	1	42	2	2.57033	3.63112	4.69191	0.0305273	0.0269474	0.143385	0.123442
chr20	3979693	3979793	7309049	0	-	0.28	[0,0.28]	chr20	744300	49	INTRON	INTRON	RNF24	ENSG00000101236.17	ENST00000336095.10:ENST00000358395.11:ENST00000545616.2	protein_coding	protein_coding	protein_coding	protein_coding	1	42	2	2.57033	3.63112	4.69191	0.0305273	0.0269474	0.143385	0.123442
chr6	12067909	12068008	2814785	0	+	0.272727	[0,0.28]	chr6	264800	288	INTRON	INTRON	HIVEP1	ENSG00000095951.17	ENST00000491710.5:ENST00000487103.5:ENST00000379388.7:ENST00000627968.2:ENST00000541134.5:ENST00000442081.6:ENST00000478545.1	protein_coding	protein_coding	protein_coding	protein_coding	1	42	2	2.57033	3.63112	4.69191	0.0305273	0.0269474	0.143385	0.123442
chr3	71354198	71354297	1742858	0	-	0.545455	(0.515,0.57]	chr3	177310	186	INTRON	INTRON	FOXP1	ENSG00000114861.24	ENST00000318789.11:ENST00000649528.3:ENST00000615603.5:ENST00000493089.7:ENST00000649596.1:ENST00000648710.2:ENST00000327590.9:ENST00000648321.1:ENST00000649610.2:ENST00000648718.1:ENST00000649631.1:ENST00000648384.1:ENST00000648380.1:ENST00000650068.2:ENST00000650295.1:ENST00000648895.1:ENST00000318779.7:ENST00000471386.3:ENST00000648783.1:ENST00000650156.1:ENST00000649133.1:ENST00000493010.2:ENST00000649145.1:ENST00000648192.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	32	2	3.05839	3.6311	4.20381	0.0189208	0.00485936	0.108861	0.0640618
chr17	27517308	27517408	6581376	0	+	0.41	(0.408,0.44]	chr17	639666	331	INTRON	INTRON	KSR1	ENSG00000141068.15	ENST00000644974.2:ENST00000583370.5:ENST00000398988.7:ENST00000268763.10:ENST00000509603.6:ENST00000582311.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	70	2	1.82275	3.631075	5.4394	0.0123226	6.50925e-4	0.097243	0.0232863
chr2	88584341	88584441	1173994	0	-	0.45	(0.44,0.476]	chr2	125367	4	INTRON	INTRON	EIF2AK3	ENSG00000172071.15	ENST00000303236.9:ENST00000652736.1:ENST00000684642.1:ENST00000682276.1:ENST00000682952.1:ENST00000684455.1:ENST00000652099.1:ENST00000682892.1:ENST00000415570.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	55	2	1.81595	3.631075	5.4462	0.0317953	5.83686e-4	0.14477	0.0223753
chr7	23456080	23456180	3503523	0	-	0.27	[0,0.28]	chr7	326910	249	INTRON	INTRON	IGF2BP3	ENSG00000136231.14	ENST00000258729.8:ENST00000421467.6:ENST00000468263.5:ENST00000491719.5:ENST00000476938.5:ENST00000468005.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	64	2	2.06132	3.6310149999999997	5.20071	0.0408268	0.00261806	0.1451	0.0470772
chr3	72423007	72423107	1745685	0	-	0.48	(0.476,0.515]	chr3	177368	425	INTRON	INTRON	RYBP	ENSG00000163602.12	ENST00000477973.5	protein_coding	protein_coding	protein_coding	protein_coding	2	49	2	1.86492	3.631005	5.39709	0.0550347	2.55871e-4	0.165463	0.0142249
chr7	99562763	99562840	3362733	0	+	0.454545	(0.44,0.476]	chr7	314136	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ZNF655	ENSG00000197343.11	ENST00000320583.9:ENST00000626122.2:ENST00000467680.5:ENST00000357864.6:ENST00000452314.5:ENST00000416144.5:ENST00000454654.5:ENST00000412636.5:ENST00000252713.9:ENST00000449244.5:ENST00000423973.5:ENST00000493947.5:ENST00000425063.5:ENST00000493277.5:ENST00000422422.5:ENST00000422164.5:ENST00000427931.5:ENST00000422647.5:ENST00000424881.5:ENST00000440391.5:ENST00000394163.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	121	2	2.8424	3.6309750000000003	4.41955	6.35745e-4	6.27516e-6	0.0231636	0.00175994
chr12	68643335	68643434	5161532	0	+	0.242424	[0,0.28]	chr12	488591	18	INTRON	INTRON	RAP1B	ENSG00000127314.18	ENST00000460800.5:ENST00000393436.9:ENST00000250559.14:ENST00000425247.6:ENST00000501412.2:ENST00000450214.6:ENST00000463493.5:ENST00000537460.5:ENST00000341355.9:ENST00000538283.5:ENST00000541167.5:ENST00000422358.6:ENST00000489473.6:ENST00000545270.5:ENST00000538980.5:ENST00000543393.5:ENST00000542018.5:ENST00000540209.5:ENST00000378985.7:ENST00000453560.6:ENST00000534899.5:ENST00000542145.5:ENST00000539091.5:ENST00000535492.5:ENST00000540781.5:ENST00000485252.6:ENST00000538877.5:ENST00000541386.5:ENST00000543697.5:ENST00000545720.6:ENST00000541216.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	42	2	2.43761	3.6309699999999996	4.82433	0.0423864	0.0200334	0.161744	0.109608
chr15	87428397	87428497	6253831	0	-	0.25	[0,0.28]	chr15	596790	1012	INTRON	INTRON	ENSG00000259560	ENSG00000259560.2	ENST00000665121.1:ENST00000656130.1	lncRNA	lncRNA	lncRNA	lncRNA	1	42	2	2.43761	3.6309699999999996	4.82433	0.0423864	0.0200334	0.161744	0.109608
chr19	19471809	19471909	7036013	0	+	0.58	(0.57,1]	chr19	701466	58	INTRON	INTRON	GATAD2A	ENSG00000167491.18	ENST00000360315.7:ENST00000609040.5:ENST00000417582.6:ENST00000683918.1:ENST00000432704.5:ENST00000404158.5:ENST00000429242.7:ENST00000358713.7:ENST00000444839.1:ENST00000418032.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	24	2	3.09313	3.6309699999999996	4.16881	0.00574776	0.00369015	0.0681402	0.0535094
chr2	197839011	197839111	969446	0	+	0.27	[0,0.28]	chr2	104858	283	INTRON	INTRON	PLCL1	ENSG00000115896.16	ENST00000428675.6:ENST00000435320.1:ENST00000487695.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	42	2	2.43761	3.6309699999999996	4.82433	0.0423864	0.0200334	0.161744	0.109608
chr6	150187863	150187963	2997224	0	+	0.25	[0,0.28]	chr6	280443	440	INTRON	INTRON	PPP1R14C	ENSG00000198729.5	ENST00000361131.5	protein_coding	protein_coding	protein_coding	protein_coding	1	42	2	2.43761	3.6309699999999996	4.82433	0.0423864	0.0200334	0.161744	0.109608
chr9	91872762	91872862	4284490	0	-	0.58	(0.57,1]	chr9	393909	966	INTRON	INTRON	ROR2	ENSG00000169071.15	ENST00000375715.5:ENST00000375708.4:ENST00000550066.5:ENST00000495386.5:ENST00000546883.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	24	2	3.09313	3.6309699999999996	4.16881	0.00574776	0.00369015	0.0681402	0.0535094
chr9	124714707	124714807	4348649	0	-	0.18	[0,0.28]	chr9	399255	1190	INTRON	INTRON	NR6A1	ENSG00000148200.17	ENST00000487099.7:ENST00000373584.7:ENST00000416460.6:ENST00000344523.8	protein_coding	protein_coding	protein_coding	protein_coding	1	42	2	2.43761	3.6309699999999996	4.82433	0.0423864	0.0200334	0.161744	0.109608
chr1	224316111	224316210	644781	0	-	0.343434	(0.32,0.35]	chr1	76193	26	INTRON	INTRON	NVL	ENSG00000143748.18	ENST00000391875.6:ENST00000469968.5:ENST00000482491.5:ENST00000281701.11:ENST00000469075.5:ENST00000340871.8:ENST00000467882.5:ENST00000492281.5:ENST00000488718.5:ENST00000436927.5:ENST00000470989.5:ENST00000470903.5:ENST00000461466.5:ENST00000461546.2:ENST00000468673.5:ENST00000487758.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	87	2	3.31533	3.630955	3.94658	0.00323121	1.32883e-4	0.0507087	0.00993659
chr16	22496898	22496997	6322574	0	+	0.585859	(0.57,1]	chr16	605439	47	INTRON	INTRON	NPIPB5	ENSG00000243716.11	ENST00000415654.5:ENST00000415833.6:ENST00000546168.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	72	2	3.54665	3.630955	3.71526	2.33646e-5	7.50551e-6	0.00378116	0.00205959
chr15	83022578	83022678	6248985	0	-	0.51	(0.476,0.515]	chr15	596379	1	SS3_PROX	SS3_PROX:INTRON	BTBD1:ENSG00000259767	ENSG00000064726.10:ENSG00000259767.1	ENST00000261721.9:ENST00000379403.2:ENST00000559652.5:ENST00000558344.1:ENST00000560450.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA	1	34	2	2.56868	3.63094	4.6932	0.0256676	0.00753088	0.133676	0.074841
chr19	10754420	10754520	7014133	0	+	0.5	(0.476,0.515]	chr19	696920	354	INTRON	INTRON	DNM2	ENSG00000079805.19	ENST00000683738.1:ENST00000682285.1:ENST00000682524.1:ENST00000355667.11:ENST00000389253.9:ENST00000585892.5:ENST00000359692.10:ENST00000408974.8:ENST00000586939.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	34	2	2.56868	3.63094	4.6932	0.0256676	0.00753088	0.133676	0.074841
chr7	99567002	99567101	3362778	0	+	0.515152	(0.476,0.515]	chr7	314147	24	INTRON	INTRON	ZNF655	ENSG00000197343.11	ENST00000626122.2:ENST00000454654.5:ENST00000412636.5:ENST00000252713.9:ENST00000449244.5:ENST00000493947.5:ENST00000425063.5:ENST00000493277.5:ENST00000422164.5:ENST00000427931.5:ENST00000422647.5:ENST00000424881.5:ENST00000394163.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	34	2	2.56868	3.63094	4.6932	0.0256676	0.00753088	0.133676	0.074841
chr8	66669586	66669685	3774910	0	+	0.575758	(0.57,1]	chr8	350072	15	INTRON	INTRON	C8orf44	ENSG00000288596.2	ENST00000521113.1:ENST00000661636.1:ENST00000521889.5	lncRNA	lncRNA	lncRNA	lncRNA	2	31	2	2.58733	3.6308800000000003	4.67443	0.00454222	8.07515e-4	0.0595107	0.0258804
chr10	92004631	92004730	4489560	0	+	0.50505	(0.476,0.515]	chr10	413421	65	INTRON	INTRON	BTAF1	ENSG00000095564.15	ENST00000265990.12	protein_coding	protein_coding	protein_coding	protein_coding	2	49	2	2.26789	3.630655	4.99342	0.0176567	0.00139274	0.105233	0.0341261
chr3	99827541	99827641	1461997	0	+	0.32	(0.28,0.32]	chr3	153488	91	INTRON	INTRON	CMSS1	ENSG00000184220.12	ENST00000463526.1:ENST00000421999.8:ENST00000491299.5:ENST00000496116.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	58	2	2.00989	3.63065	5.25141	0.0427801	0.00125199	0.148082	0.0328543
chr1	174281271	174281371	258338	0	+	0.42	(0.408,0.44]	chr1	30796	21	INTRON	INTRON	RABGAP1L	ENSG00000152061.24	ENST00000357444.10:ENST00000251507.8:ENST00000681986.1:ENST00000457696.1:ENST00000367690.5	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	2.74518	3.63061	4.51604	0.0152229	0.0137419	0.108535	0.0949306
chr14	77509289	77509388	5927052	0	-	0.414141	(0.408,0.44]	chr14	563658	34	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	SPTLC2	ENSG00000100596.8	ENST00000216484.7:ENST00000692906.1:ENST00000687688.1:ENST00000686627.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	34	2	2.74518	3.63061	4.51604	0.0152229	0.0137419	0.108535	0.0949306
chr2	46545902	46546002	770074	0	+	0.43	(0.408,0.44]	chr2	86910	17	INTRON	INTRON	RHOQ	ENSG00000119729.12	ENST00000465198.1:ENST00000238738.9:ENST00000432183.5:ENST00000489471.5:ENST00000482449.2:ENST00000473428.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	34	2	2.74518	3.63061	4.51604	0.0152229	0.0137419	0.108535	0.0949306
chr7	105225921	105226021	3602269	0	-	0.44	(0.408,0.44]	chr7	336137	190	INTRON	INTRON	SRPK2	ENSG00000135250.17	ENST00000393651.8:ENST00000357311.7:ENST00000489828.5:ENST00000482897.5:ENST00000460391.5:ENST00000462282.5:ENST00000465112.5:ENST00000482862.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	34	2	2.74518	3.63061	4.51604	0.0152229	0.0137419	0.108535	0.0949306
chrX	77785244	77785344	7847461	0	-	0.44	(0.408,0.44]	chrX	800211	677	INTRON	INTRON	ATRX	ENSG00000085224.23	ENST00000373344.11:ENST00000395603.7:ENST00000480283.5:ENST00000624166.3:ENST00000624032.3:ENST00000623321.3:ENST00000624668.3:ENST00000622960.1:ENST00000624193.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	34	2	2.74518	3.63061	4.51604	0.0152229	0.0137419	0.108535	0.0949306
chr1	84499790	84499888	495955	0	-	0.459184	(0.44,0.476]	chr1	58754	16	UTR3	UTR3:EXON_MRNA:INTRON	GNG5	ENSG00000174021.12	ENST00000689285.1:ENST00000370645.9:ENST00000487806.5:ENST00000370641.3:ENST00000686161.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	35	2	3.02366	3.630605	4.23755	0.0263357	0.00603307	0.122221	0.0700813
chr9	41157391	41157486	4259404	0	-	0.473684	(0.44,0.476]	chr9	391937	3	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	CBWD6	ENSG00000215126.11	ENST00000613716.4:ENST00000377391.8:ENST00000456520.5:ENST00000382436.7:ENST00000494538.6:ENST00000617917.4:ENST00000613125.4:ENST00000610358.4:ENST00000486387.6:ENST00000617722.4:ENST00000467791.5:ENST00000490294.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	35	2	3.02366	3.630605	4.23755	0.0263357	0.00603307	0.122221	0.0700813
chr3	5129383	5129483	1353646	0	+	0.3	(0.28,0.32]	chr3	142361	4	INTRON	INTRON	ARL8B	ENSG00000134108.14	ENST00000429403.5:ENST00000256496.8:ENST00000455168.5:ENST00000444332.1:ENST00000419534.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	64	2	2.1076	3.6305899999999998	5.15358	0.0133585	0.0052282	0.100772	0.0633615
chr2	127305003	127305102	1222964	0	-	0.323232	(0.32,0.35]	chr2	130196	65	UTR3	UTR3:EXON_MRNA	MAP3K2	ENSG00000169967.17	ENST00000682094.1:ENST00000409947.5	protein_coding	protein_coding	protein_coding	protein_coding	3	60	2	1.97654	3.63052	5.2845	0.0199113	0.00240071	0.120668	0.0440612
chr2	84975644	84975744	820308	0	+	0.37	(0.35,0.378]	chr2	91419	30	INTRON	INTRON	KCMF1	ENSG00000176407.18	ENST00000456682.1:ENST00000409785.9:ENST00000428691.5:ENST00000453448.1	protein_coding	protein_coding	protein_coding	protein_coding	3	58	2	2.15877	3.630515	5.10226	0.0102036	0.00327038	0.089002	0.0508595
chr12	62558641	62558739	5152108	0	+	0.255102	[0,0.28]	chr12	487597	21	INTRON	INTRON	MON2	ENSG00000061987.16	ENST00000641654.1:ENST00000546600.5:ENST00000393630.8:ENST00000547095.5:ENST00000552738.5:ENST00000393629.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	69	2	1.95669	3.630465	5.30424	0.0237518	0.00584781	0.129075	0.0667594
chr3	37103013	37103113	1655886	0	-	0.27	[0,0.28]	chr3	169938	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	LRRFIP2	ENSG00000093167.18	ENST00000336686.9:ENST00000354379.8:ENST00000421276.6:ENST00000396428.6:ENST00000440230.5:ENST00000416425.5:ENST00000481682.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	69	2	1.95669	3.630465	5.30424	0.0237518	0.00584781	0.129075	0.0667594
chr1	147971455	147971554	213231	0	+	0.424242	(0.408,0.44]	chr1	23682	11	INTRON	INTRON	GPR89B	ENSG00000188092.15	ENST00000478307.5:ENST00000488165.5:ENST00000314163.12:ENST00000491975.5:ENST00000461786.5:ENST00000488603.5:ENST00000490955.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	186	2	2.88385	3.630435	4.37702	2.08663e-4	1.75642e-7	0.0131276	1.92524e-4
chr7	72881577	72881677	3329811	0	+	0.32	(0.28,0.32]	chr7	309555	13	INTRON	INTRON	POM121	ENSG00000196313.13	ENST00000627934.3:ENST00000395270.5	protein_coding	protein_coding	protein_coding	protein_coding	4	172	2	3.60037	3.630435	3.6605	9.32755e-5	5.74264e-5	0.00857742	0.00619941
chr10	63173519	63173618	4632432	0	-	0.474747	(0.44,0.476]	chr10	426101	46	INTRON	INTRON	JMJD1C	ENSG00000171988.20	ENST00000467356.5:ENST00000399262.7:ENST00000402544.5:ENST00000542921.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	59	2	1.71574	3.6304000000000003	5.54506	0.045256	1.21665e-4	0.149888	0.00942499
chr1	1865272	1865372	362583	0	-	0.44	(0.408,0.44]	chr1	42311	252	INTRON	INTRON	GNB1	ENSG00000078369.18	ENST00000610897.4:ENST00000615252.4:ENST00000378609.9:ENST00000439272.6:ENST00000434686.6:ENST00000472614.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	34	2	2.58179	3.630365	4.67894	0.024638	0.0087648	0.131869	0.0788605
chr1	39253506	39253603	76381	0	+	0.43299	(0.408,0.44]	chr1	9728	12	INTRON	INTRON	MACF1	ENSG00000127603.32	ENST00000361689.7:ENST00000689911.1:ENST00000567887.5:ENST00000372915.8:ENST00000472385.2:ENST00000693209.1:ENST00000524432.5:ENST00000467673.5:ENST00000688212.1:ENST00000672812.1:ENST00000564288.6:ENST00000494012.1:ENST00000480624.5:ENST00000671089.2:ENST00000690080.1:ENST00000469366.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	34	2	2.58179	3.630365	4.67894	0.024638	0.0087648	0.131869	0.0788605
chr1	184941404	184941504	602722	0	-	0.43	(0.408,0.44]	chr1	71774	417	INTRON	INTRON	NIBAN1	ENSG00000135842.17	ENST00000367511.4	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	2.58179	3.630365	4.67894	0.024638	0.0087648	0.131869	0.0788605
chr16	15673467	15673565	6307119	0	+	0.418367	(0.408,0.44]	chr16	603432	3	INTRON	INTRON	NDE1	ENSG00000072864.16	ENST00000396355.5:ENST00000674888.1:ENST00000675171.1:ENST00000675951.1:ENST00000674900.1:ENST00000674588.1:ENST00000674538.1:ENST00000396354.6:ENST00000675926.1:ENST00000570727.5:ENST00000573203.5:ENST00000674995.1:ENST00000674554.1:ENST00000674581.1:ENST00000577101.6:ENST00000572756.6:ENST00000574163.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	34	2	2.58179	3.630365	4.67894	0.024638	0.0087648	0.131869	0.0788605
chr6	169653696	169653795	3266616	0	-	0.424242	(0.408,0.44]	chr6	303167	13	INTRON	INTRON	WDR27	ENSG00000184465.16	ENST00000448612.6:ENST00000648472.1:ENST00000423258.5:ENST00000647790.1:ENST00000546525.5:ENST00000441385.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	34	2	2.58179	3.630365	4.67894	0.024638	0.0087648	0.131869	0.0788605
chr7	157342255	157342355	3455353	0	+	0.42	(0.408,0.44]	chr7	323052	18	INTRON	INTRON	DNAJB6	ENSG00000105993.15	ENST00000441561.5:ENST00000429029.6:ENST00000262177.9:ENST00000486083.6:ENST00000417758.5:ENST00000459889.5:ENST00000443280.5:ENST00000488001.5:ENST00000441291.5:ENST00000437030.5:ENST00000412557.5:ENST00000453383.5:ENST00000439402.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	34	2	2.58179	3.630365	4.67894	0.024638	0.0087648	0.131869	0.0788605
chr1	96804484	96804584	168780	0	+	0.26	[0,0.28]	chr1	18250	3	SS3_PROX	SS3_PROX:INTRON	PTBP2	ENSG00000117569.19	ENST00000482253.5:ENST00000675735.1:ENST00000609116.5:ENST00000674951.1:ENST00000675080.1:ENST00000426398.3:ENST00000370197.5:ENST00000370198.5:ENST00000476419.5:ENST00000676292.1:ENST00000676096.1:ENST00000675365.1:ENST00000674579.1:ENST00000675401.1:ENST00000459735.5:ENST00000476783.5:ENST00000492905.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	72	2	2.25796	3.6302950000000003	5.00263	0.013055	0.00871258	0.093385	0.0844834
chr10	50373612	50373712	4618181	0	-	0.29	(0.28,0.32]	chr10	425422	289	INTRON	INTRON	SGMS1	ENSG00000198964.14	ENST00000429490.5:ENST00000361781.7:ENST00000619438.4:ENST00000492601.2:ENST00000609445.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	64	2	1.6633	3.6302250000000003	5.59715	0.0522231	0.00123856	0.177274	0.0322669
chr2	126663251	126663350	862080	0	+	0.535354	(0.515,0.57]	chr2	96613	46	INTRON	INTRON	GYPC	ENSG00000136732.16	ENST00000459787.1:ENST00000259254.9:ENST00000409836.3:ENST00000356887.12	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	90	2	2.92115	3.630205	4.33926	0.00110258	1.1739e-5	0.03038	0.00271029
chr15	22840388	22840487	5976539	0	+	0.565657	(0.515,0.57]	chr15	568403	2	INTRON	INTRON	NIPA2	ENSG00000140157.16	ENST00000560205.5:ENST00000398014.7:ENST00000359727.8:ENST00000674173.1:ENST00000560762.5:ENST00000337451.8:ENST00000559571.1:ENST00000674289.1:ENST00000674477.1:ENST00000398013.7:ENST00000674330.1:ENST00000560039.1:ENST00000539711.2:ENST00000561072.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	35	2	3.09002	3.630195	4.17037	0.0139194	0.00491099	0.10247	0.0609494
chr1	95182170	95182270	167220	0	+	0.35	(0.32,0.35]	chr1	18138	79	INTRON	INTRON	TLCD4:TLCD4-RWDD3	ENSG00000152078.10:ENSG00000271092.5	ENST00000370203.9:ENST00000604534.5:ENST00000604203.1	protein_coding	protein_coding	protein_coding	protein_coding	1	37	2	2.64129	3.63009	4.61889	0.0222819	0.0166646	0.124303	0.102621
chr10	87131663	87131763	4481609	0	+	0.35	(0.32,0.35]	chr10	412411	343	INTRON	INTRON	SHLD2	ENSG00000122376.12	ENST00000437629.6:ENST00000298784.5:ENST00000298786.5	protein_coding	protein_coding	protein_coding	protein_coding	1	37	2	2.64129	3.63009	4.61889	0.0222819	0.0166646	0.124303	0.102621
chr12	62589016	62589116	5152428	0	+	0.35	(0.32,0.35]	chr12	487653	1	SS5_PROX	SS5_PROX:INTRON	MON2	ENSG00000061987.16	ENST00000641654.1:ENST00000546600.5:ENST00000393630.8:ENST00000547095.5:ENST00000552738.5:ENST00000393629.6:ENST00000551307.5:ENST00000551397.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	37	2	2.64129	3.63009	4.61889	0.0222819	0.0166646	0.124303	0.102621
chr21	44855524	44855608	7468937	0	-	0.321429	(0.32,0.35]	chr21	761225	3	SS3_PROX	SS3_PROX:INTRON	PTTG1IP	ENSG00000183255.12	ENST00000397887.7:ENST00000445724.3:ENST00000330938.8:ENST00000397886.3:ENST00000474737.5:ENST00000494690.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	37	2	2.64129	3.63009	4.61889	0.0222819	0.0166646	0.124303	0.102621
chr3	129459214	129459314	1500032	0	+	0.35	(0.32,0.35]	chr3	156745	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	IFT122	ENSG00000163913.14	ENST00000693654.1:ENST00000687461.1:ENST00000440957.7:ENST00000688129.1:ENST00000689313.1:ENST00000689801.1:ENST00000691583.1:ENST00000347300.6:ENST00000685282.1:ENST00000692242.1:ENST00000687377.1:ENST00000693489.1:ENST00000687645.1:ENST00000689643.1:ENST00000688970.1:ENST00000512157.6:ENST00000692228.1:ENST00000693114.1:ENST00000690862.1:ENST00000689332.1:ENST00000685921.1:ENST00000691770.1:ENST00000692985.1:ENST00000685447.1:ENST00000693162.1:ENST00000692391.1:ENST00000686531.1:ENST00000693129.1:ENST00000689796.1:ENST00000685939.1:ENST00000686830.1:ENST00000687791.1:ENST00000686473.1:ENST00000690723.1:ENST00000689871.1:ENST00000688504.1:ENST00000691964.1:ENST00000686375.1:ENST00000691733.1:ENST00000691705.1:ENST00000690209.1:ENST00000687864.1:ENST00000689819.1:ENST00000296266.7:ENST00000689492.1:ENST00000687398.1:ENST00000690663.1:ENST00000693588.1:ENST00000690677.1:ENST00000688664.1:ENST00000431818.8:ENST00000507564.5:ENST00000693233.1:ENST00000504021.6:ENST00000348417.7:ENST00000692901.1:ENST00000515783.6:ENST00000688020.1:ENST00000512220.5:ENST00000349441.6:ENST00000689005.1:ENST00000691641.1:ENST00000692321.1:ENST00000685087.1:ENST00000692728.1:ENST00000691360.1:ENST00000685189.1:ENST00000687766.1:ENST00000687845.1:ENST00000692508.1:ENST00000506507.5:ENST00000509815.1:ENST00000509195.5:ENST00000502304.5:ENST00000502456.5:ENST00000510524.5:ENST00000690617.1:ENST00000685811.1:ENST00000689384.1:ENST00000688392.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	37	2	2.64129	3.63009	4.61889	0.0222819	0.0166646	0.124303	0.102621
chr9	69758704	69758804	4263954	0	-	0.35	(0.32,0.35]	chr9	392409	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	PTAR1	ENSG00000188647.13	ENST00000377200.9:ENST00000340434.5:ENST00000474925.2:ENST00000472967.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	37	2	2.64129	3.63009	4.61889	0.0222819	0.0166646	0.124303	0.102621
chr9	87548581	87548681	4150319	0	+	0.35	(0.32,0.35]	chr9	378547	417	INTRON	INTRON	DAPK1	ENSG00000196730.13	ENST00000358077.9:ENST00000469640.6:ENST00000472284.5:ENST00000469067.5:ENST00000408954.8:ENST00000622514.4:ENST00000496522.5:ENST00000472344.1:ENST00000491893.5:ENST00000489291.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	37	2	2.64129	3.63009	4.61889	0.0222819	0.0166646	0.124303	0.102621
chr1	77647144	77647244	493108	0	-	0.34	(0.32,0.35]	chr1	58315	51	INTRON	INTRON	ZZZ3	ENSG00000036549.13	ENST00000370801.8:ENST00000370798.5:ENST00000433749.5:ENST00000414381.5:ENST00000463166.5:ENST00000469944.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	37	2	2.56618	3.6299900000000003	4.6938	0.0274185	0.0137794	0.136498	0.0949306
chr10	50542399	50542498	4619874	0	-	0.323232	(0.32,0.35]	chr10	425452	221	INTRON	INTRON	SGMS1	ENSG00000198964.14	ENST00000429490.5:ENST00000361781.7:ENST00000619438.4:ENST00000609445.5:ENST00000608287.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	37	2	2.56618	3.6299900000000003	4.6938	0.0274185	0.0137794	0.136498	0.0949306
chr3	47652626	47652725	1683756	0	-	0.323232	(0.32,0.35]	chr3	171996	135	INTRON	INTRON	SMARCC1	ENSG00000173473.11	ENST00000254480.10:ENST00000425518.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	37	2	2.56618	3.6299900000000003	4.6938	0.0274185	0.0137794	0.136498	0.0949306
chr5	55359692	55359791	2355620	0	+	0.343434	(0.32,0.35]	chr5	227211	6	INTRON	INTRON	MTREX	ENSG00000039123.16	ENST00000230640.10:ENST00000506750.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	37	2	2.56618	3.6299900000000003	4.6938	0.0274185	0.0137794	0.136498	0.0949306
chr7	105189742	105189842	3601904	0	-	0.34	(0.32,0.35]	chr7	336124	201	INTRON	INTRON	SRPK2	ENSG00000135250.17	ENST00000393651.8:ENST00000357311.7:ENST00000485455.1:ENST00000489828.5:ENST00000476117.1:ENST00000482897.5:ENST00000460391.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	37	2	2.56618	3.6299900000000003	4.6938	0.0274185	0.0137794	0.136498	0.0949306
chr19	40762200	40762300	7070202	0	+	0.48	(0.476,0.515]	chr19	706505	22	INTRON	INTRON	SNRPA	ENSG00000077312.9	ENST00000601545.5:ENST00000597353.5:ENST00000243563.8:ENST00000601393.1:ENST00000598923.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	36	2	2.56033	3.6297550000000003	4.69918	0.0287634	0.00400966	0.127066	0.057767
chr2	214799216	214799316	1326084	0	-	0.49	(0.476,0.515]	chr2	138639	17	INTRON	INTRON	BARD1	ENSG00000138376.11	ENST00000260947.9:ENST00000617164.5:ENST00000619009.5:ENST00000613374.5:ENST00000613706.5:ENST00000421162.2:ENST00000613192.2:ENST00000620057.4:ENST00000455743.5:ENST00000471787.1:ENST00000479904.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	36	2	2.56033	3.6297550000000003	4.69918	0.0287634	0.00400966	0.127066	0.057767
chr20	47332058	47332158	7349265	0	-	0.48	(0.476,0.515]	chr20	749346	131	INTRON	INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000435836.5:ENST00000446894.5:ENST00000441977.1	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	2.56033	3.6297550000000003	4.69918	0.0287634	0.00400966	0.127066	0.057767
chr7	127774789	127774889	3403638	0	+	0.52	(0.515,0.57]	chr7	318134	530	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000468166.5:ENST00000465900.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	34	2	2.12971	3.629725	5.12974	0.0757903	4.54392e-4	0.194427	0.0192381
chr1	63521632	63521731	471671	0	-	0.515152	(0.476,0.515]	chr1	57000	111	INTRON	INTRON	ITGB3BP	ENSG00000142856.17	ENST00000271002.15:ENST00000489099.5:ENST00000371092.7:ENST00000460394.5:ENST00000462285.5:ENST00000489863.5:ENST00000465781.5:ENST00000460251.5:ENST00000478138.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	37	2	2.13854	3.62963	5.12072	0.0776563	8.42139e-4	0.196285	0.0263691
chr1	67247460	67247560	141192	0	+	0.48	(0.476,0.515]	chr1	15789	68	INTRON	INTRON	IL23R	ENSG00000162594.16	ENST00000637002.1:ENST00000347310.10:ENST00000425614.3:ENST00000473881.2:ENST00000395227.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	37	2	2.13854	3.62963	5.12072	0.0776563	8.42139e-4	0.196285	0.0263691
chr12	116203466	116203566	5424806	0	-	0.45	(0.44,0.476]	chr12	518271	223	INTRON	INTRON	MED13L	ENSG00000123066.9	ENST00000281928.9:ENST00000650226.1:ENST00000548743.2:ENST00000647567.1:ENST00000551197.2	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	2.29425	3.62958	4.96491	0.0518406	0.0034249	0.176696	0.0517761
chr17	39203609	39203700	6606972	0	+	0.461538	(0.44,0.476]	chr17	643246	1	SS3_PROX	SS3_PROX:INTRON	RPL19	ENSG00000108298.12	ENST00000678147.1:ENST00000225430.9:ENST00000678609.1:ENST00000679038.1:ENST00000579374.5:ENST00000678012.1:ENST00000577741.2:ENST00000579260.5:ENST00000582193.5:ENST00000678791.1:ENST00000678573.1:ENST00000585199.2:ENST00000678189.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	35	2	2.29425	3.62958	4.96491	0.0518406	0.0034249	0.176696	0.0517761
chr17	44458087	44458187	6780379	0	-	0.47	(0.44,0.476]	chr17	668671	123	INTRON	INTRON	GPATCH8	ENSG00000186566.13	ENST00000591680.6:ENST00000335500.8:ENST00000587228.5:ENST00000585614.1:ENST00000590041.5:ENST00000592746.5:ENST00000586037.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	63	2	1.60176	3.6295450000000002	5.65733	0.0389597	2.3957e-4	0.160861	0.0142132
chr3	12573912	12574007	1368051	0	+	0.463158	(0.44,0.476]	chr3	144092	12	INTRON	INTRON	MKRN2	ENSG00000075975.17	ENST00000677816.1:ENST00000677941.1:ENST00000676544.1:ENST00000677237.1:ENST00000679143.1:ENST00000676701.1:ENST00000170447.12:ENST00000411987.5:ENST00000448482.1:ENST00000677142.1:ENST00000676541.1:ENST00000677798.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	46	2	2.49823	3.629455	4.76068	0.00718224	0.00653414	0.0756118	0.0699952
chr20	4000164	4000264	7309254	0	-	0.35	(0.32,0.35]	chr20	744300	254	INTRON	INTRON	RNF24	ENSG00000101236.17	ENST00000336095.10:ENST00000358395.11:ENST00000545616.2	protein_coding	protein_coding	protein_coding	protein_coding	3	66	2	1.73318	3.6294	5.52562	0.0462868	2.76065e-4	0.150684	0.0147997
chr6	52268368	52268468	3105738	0	-	0.41	(0.408,0.44]	chr6	290766	4	SS3_PROX	SS3_PROX:INTRON	MCM3	ENSG00000112118.20	ENST00000616552.4:ENST00000229854.12:ENST00000596288.7:ENST00000419835.8:ENST00000421471.1	protein_coding	protein_coding	protein_coding	protein_coding	2	76	2	3.59564	3.6293699999999998	3.6631	6.21419e-4	5.73354e-4	0.0229151	0.0217398
chr3	143018371	143018471	1529249	0	+	0.3	(0.28,0.32]	chr3	159357	10	INTRON	INTRON	U2SURP	ENSG00000163714.18	ENST00000488497.7:ENST00000473835.7:ENST00000461591.5:ENST00000493598.6:ENST00000463563.6:ENST00000470400.5:ENST00000488587.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	55	2	2.59504	3.629315	4.66359	0.0193496	0.00582473	0.108861	0.0687439
chr16	22498687	22498786	6322592	0	+	0.515152	(0.476,0.515]	chr16	605439	65	INTRON	INTRON	NPIPB5	ENSG00000243716.11	ENST00000415654.5:ENST00000415833.6:ENST00000546168.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	151	2	2.71985	3.6293	4.53875	1.52058e-4	6.10545e-6	0.0106137	0.00185549
chr12	62324085	62324184	5150196	0	+	0.232323	[0,0.28]	chr12	487327	21	INTRON	INTRON	USP15	ENSG00000135655.16	ENST00000353364.7:ENST00000550632.5:ENST00000312635.10:ENST00000280377.10:ENST00000549237.5:ENST00000546694.1:ENST00000552997.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	58	2	2.3719	3.6290750000000003	4.88625	0.0173315	0.0139689	0.104099	0.10247
chr7	103090495	103090594	3373004	0	+	0.494949	(0.476,0.515]	chr7	315673	32	INTRON	INTRON	ARMC10	ENSG00000170632.14	ENST00000441711.6:ENST00000454559.5:ENST00000428183.6:ENST00000541300.5:ENST00000425331.5:ENST00000323735.10:ENST00000306450.5:ENST00000323716.8:ENST00000434153.1:ENST00000431642.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	136	2	2.96113	3.62897	4.29681	8.2239e-5	2.44502e-5	0.00761395	0.00406051
chr1	176060793	176060893	590236	0	-	0.22	[0,0.28]	chr1	70908	141	INTRON	INTRON	COP1	ENSG00000143207.21	ENST00000367669.8:ENST00000367667.5:ENST00000461830.6:ENST00000367666.5:ENST00000649803.1:ENST00000308769.12:ENST00000459744.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	57	2	1.95356	3.6289	5.30424	0.0463152	0.00584781	0.166231	0.0667594
chr10	21998213	21998313	4578628	0	-	0.52	(0.515,0.57]	chr10	421947	687	INTRON	INTRON	DNAJC1	ENSG00000136770.11	ENST00000376980.8:ENST00000476103.3:ENST00000447548.5:ENST00000376946.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	31	2	2.74772	3.62886	4.51	0.0142192	0.00809449	0.103638	0.0766625
chr11	74252312	74252409	4827349	0	+	0.56701	(0.515,0.57]	chr11	450518	2	INTRON	INTRON	PPME1	ENSG00000214517.10	ENST00000328257.13:ENST00000398427.6:ENST00000543525.3:ENST00000541340.5:ENST00000538501.5:ENST00000539021.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	31	2	2.74772	3.62886	4.51	0.0142192	0.00809449	0.103638	0.0766625
chr16	84993228	84993327	6533988	0	-	0.535354	(0.515,0.57]	chr16	633145	22	INTRON	INTRON	ZDHHC7	ENSG00000153786.13	ENST00000313732.9:ENST00000344861.9:ENST00000564466.5:ENST00000569017.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	31	2	2.74772	3.62886	4.51	0.0142192	0.00809449	0.103638	0.0766625
chr19	51582382	51582480	7093667	0	+	0.530612	(0.515,0.57]	chr19	711048	1	INTRON	INTRON	ZNF175	ENSG00000105497.8	ENST00000262259.7:ENST00000436511.2:ENST00000600460.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	31	2	2.74772	3.62886	4.51	0.0142192	0.00809449	0.103638	0.0766625
chr5	131690042	131690142	2719664	0	-	0.52	(0.515,0.57]	chr5	255672	105	INTRON	INTRON	FNIP1	ENSG00000217128.13	ENST00000510461.6:ENST00000307954.12:ENST00000307968.11:ENST00000511848.1	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	2.74772	3.62886	4.51	0.0142192	0.00809449	0.103638	0.0766625
chr12	122494375	122494474	5441927	0	-	0.424242	(0.408,0.44]	chr12	520516	12	INTRON	INTRON	ZCCHC8	ENSG00000033030.15	ENST00000672018.1:ENST00000633063.3:ENST00000543897.5:ENST00000536306.5:ENST00000536663.5:ENST00000540586.1	protein_coding	protein_coding	protein_coding	protein_coding	3	55	2	2.17784	3.6288350000000005	5.07983	0.00916282	0.00247652	0.0855292	0.0446195
chr10	38044677	38044777	4427238	0	+	0.5	(0.476,0.515]	chr10	408004	269	INTRON	INTRON	ZNF33A	ENSG00000189180.16	ENST00000307441.13:ENST00000374618.7:ENST00000628825.2:ENST00000458705.6:ENST00000432900.7:ENST00000469037.2:ENST00000478556.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	37	2	2.82673	3.6288299999999998	4.43093	0.0134403	0.00931369	0.0946278	0.0855292
chr8	37866963	37867061	3935613	0	-	0.367347	(0.35,0.378]	chr8	360553	35	INTRON	INTRON	RAB11FIP1	ENSG00000156675.16	ENST00000330843.9:ENST00000287263.8:ENST00000522727.5:ENST00000523182.5:ENST00000522774.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	36	2	2.86451	3.6287700000000003	4.39303	0.0237246	0.0109111	0.118716	0.0923273
chr4	169010089	169010182	2294682	0	-	0.537634	(0.515,0.57]	chr4	222093	1	UTR5	UTR5:EXON_MRNA	CBR4	ENSG00000145439.12	ENST00000510042.5:ENST00000306193.8:ENST00000504480.5:ENST00000506808.1:ENST00000507752.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	292	2	3.61266	3.628755	3.64485	1.69858e-7	1.46831e-7	2.02034e-4	1.75008e-4
chr12	49747526	49747626	5134989	0	+	0.52	(0.515,0.57]	chr12	484123	26	INTRON	INTRON	TMBIM6	ENSG00000139644.13	ENST00000548809.5:ENST00000551154.5:ENST00000546796.5:ENST00000549966.5:ENST00000547832.5:ENST00000547187.5:ENST00000267115.10:ENST00000552699.5:ENST00000552635.5:ENST00000546914.5:ENST00000548894.5:ENST00000549445.5:ENST00000550951.5:ENST00000549385.5:ENST00000548201.5:ENST00000548713.5:ENST00000423828.5:ENST00000550445.5:ENST00000549130.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	31	2	2.65834	3.62874	4.59914	0.0187418	0.00616166	0.117523	0.0676501
chr3	51562015	51562114	1426287	0	+	0.535354	(0.515,0.57]	chr3	150471	200	INTRON	INTRON	RAD54L2	ENSG00000164080.14	ENST00000684192.1:ENST00000409535.6:ENST00000487093.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	31	2	2.65834	3.62874	4.59914	0.0187418	0.00616166	0.117523	0.0676501
chr8	98746981	98747081	3999373	0	-	0.4	(0.378,0.408]	chr8	366094	237	INTRON	INTRON	STK3	ENSG00000104375.17	ENST00000617590.1:ENST00000419617.7:ENST00000523601.5:ENST00000518165.5:ENST00000521649.5:ENST00000424861.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	78	2	3.32016	3.62864	3.93712	0.00268328	1.09377e-4	0.0464781	0.00884858
chr5	36183172	36183268	2338285	0	+	0.291667	(0.28,0.32]	chr5	225920	13	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	SKP2	ENSG00000145604.17	ENST00000274254.9:ENST00000677537.1:ENST00000678260.1:ENST00000513151.6:ENST00000546211.6:ENST00000620197.5:ENST00000678270.1:ENST00000677911.1:ENST00000677984.1:ENST00000676559.1:ENST00000678537.1:ENST00000274255.11:ENST00000678580.1:ENST00000678149.1:ENST00000678948.1:ENST00000504386.1:ENST00000677905.1:ENST00000677886.1:ENST00000678129.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	43	2	2.57195	3.62861	4.68527	0.0331711	0.00819419	0.133994	0.0810802
chr16	16511214	16511314	6310974	0	+	0.33	(0.32,0.35]	chr16	604098	112	INTRON	INTRON	ENSG00000260126	ENSG00000260126.2	ENST00000567465.2	lncRNA	lncRNA	lncRNA	lncRNA	2	55	2	2.1362	3.628595	5.12099	0.0291083	0.00143632	0.128029	0.0347139
chr19	3435707	3435806	7000325	0	+	0.484848	(0.476,0.515]	chr19	694202	1	INTRON	INTRON	NFIC	ENSG00000141905.19	ENST00000641145.1:ENST00000589123.5:ENST00000395111.7:ENST00000586919.5:ENST00000341919.7:ENST00000443272.3:ENST00000590282.5:ENST00000589537.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	35	2	3.01197	3.6284899999999998	4.24501	0.0247713	0.00633162	0.12011	0.0722266
chr3	170116824	170116923	1861169	0	-	0.484848	(0.476,0.515]	chr3	186609	2	SS5_PROX	SS5_PROX:INTRON	PHC3	ENSG00000173889.16	ENST00000495893.7:ENST00000494943.5:ENST00000467570.5	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	3.01197	3.6284899999999998	4.24501	0.0247713	0.00633162	0.12011	0.0722266
chr7	128762292	128762391	3408614	0	+	0.323232	(0.32,0.35]	chr7	318457	8	INTRON	INTRON	CALU	ENSG00000128595.17	ENST00000535011.6:ENST00000542996.6:ENST00000249364.9:ENST00000449187.6:ENST00000479257.5:ENST00000493278.1	protein_coding	protein_coding	protein_coding	protein_coding	3	60	2	2.02133	3.628265	5.2352	0.017146	0.0028268	0.111072	0.0472361
chr17	47480691	47480791	6789705	0	-	0.21	[0,0.28]	chr17	669659	235	INTRON	INTRON	MRPL45P2	ENSG00000228782.8	ENST00000425159.7:ENST00000575291.5:ENST00000572695.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	1	47	2	2.54624	3.628205	4.71017	0.0388449	0.0114708	0.143072	0.0956037
chr6	82208818	82208918	3143375	0	-	0.25	[0,0.28]	chr6	293064	30	INTRON	INTRON	IBTK	ENSG00000005700.15	ENST00000505222.5:ENST00000306270.12:ENST00000610980.4:ENST00000503400.5:ENST00000503631.5:ENST00000510291.5:ENST00000369751.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	47	2	2.54624	3.628205	4.71017	0.0388449	0.0114708	0.143072	0.0956037
chr20	63207392	63207491	7362693	0	-	0.626263	(0.57,1]	chr20	751230	32	INTRON	INTRON	YTHDF1	ENSG00000149658.18	ENST00000370339.8:ENST00000370334.4	protein_coding	protein_coding	protein_coding	protein_coding	2	30	2	2.6547	3.628155	4.60161	0.00346848	0.00142229	0.0539802	0.0340865
chr1	179907864	179907964	267307	0	+	0.36	(0.35,0.378]	chr1	31269	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	TOR1AIP1	ENSG00000143337.19	ENST00000528443.6:ENST00000606911.7:ENST00000271583.7:ENST00000435319.8:ENST00000531630.6:ENST00000527391.5:ENST00000474875.5:ENST00000524653.1:ENST00000447964.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	36	2	2.39746	3.6280799999999997	4.8587	0.041314	0.00695662	0.161534	0.0718189
chr11	599988	600086	4719815	0	+	0.377551	(0.35,0.378]	chr11	436204	11	INTRON	INTRON	PHRF1	ENSG00000070047.13	ENST00000264555.10:ENST00000416188.3:ENST00000534320.5:ENST00000413872.6:ENST00000533464.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	36	2	2.39746	3.6280799999999997	4.8587	0.041314	0.00695662	0.161534	0.0718189
chr2	32036990	32037089	1091390	0	-	0.363636	(0.35,0.378]	chr2	116949	69	INTRON	INTRON	DPY30	ENSG00000162961.14	ENST00000452582.5:ENST00000414013.5:ENST00000430665.5:ENST00000422413.1:ENST00000342166.10:ENST00000295066.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	36	2	2.39746	3.6280799999999997	4.8587	0.041314	0.00695662	0.161534	0.0718189
chr21	43872545	43872645	7413863	0	+	0.36	(0.35,0.378]	chr21	755688	48	INTRON	INTRON	AGPAT3	ENSG00000160216.21	ENST00000291572.13:ENST00000448287.5	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	2.39746	3.6280799999999997	4.8587	0.041314	0.00695662	0.161534	0.0718189
chr22	26584069	26584168	7565008	0	-	0.373737	(0.35,0.378]	chr22	774054	185	INTRON	INTRON	TPST2	ENSG00000128294.16	ENST00000338754.9:ENST00000403880.5:ENST00000442495.5:ENST00000440953.5:ENST00000450022.1	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	2.39746	3.6280799999999997	4.8587	0.041314	0.00695662	0.161534	0.0718189
chr2	99485925	99486025	1189841	0	-	0.52	(0.515,0.57]	chr2	127721	206	INTRON	INTRON	REV1	ENSG00000135945.10	ENST00000393445.7:ENST00000258428.8:ENST00000413697.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	42	2	2.57298	3.6280399999999995	4.6831	0.00506495	0.00471288	0.0646039	0.0600108
chr12	42361615	42361703	5118584	0	+	0.306818	(0.28,0.32]	chr12	482950	5	EXON_LNCRNA	EXON_LNCRNA:INTRON	PPHLN1:ENSG00000274943	ENSG00000134283.18:ENSG00000274943.1	ENST00000549190.5:ENST00000337898.10:ENST00000395580.7:ENST00000610488.4:ENST00000619544.4:ENST00000613154.4:ENST00000551723.5:ENST00000552429.5:ENST00000395568.6:ENST00000256678.12:ENST00000358314.12:ENST00000449194.6:ENST00000552761.5:ENST00000551406.5:ENST00000317560.13:ENST00000432191.6:ENST00000552202.5:ENST00000546750.5:ENST00000547847.1:ENST00000552794.1:ENST00000621405.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA:processed_transcript	1	40	2	2.91832	3.627985	4.33765	0.039714	0.0102484	0.143072	0.089002
chr4	126713676	126713776	2237847	0	-	0.29	(0.28,0.32]	chr4	219029	150	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	1	40	2	2.91832	3.627985	4.33765	0.039714	0.0102484	0.143072	0.089002
chr14	30997766	30997865	5857587	0	-	0.444444	(0.44,0.476]	chr14	556508	334	INTRON	INTRON	STRN3	ENSG00000196792.12	ENST00000355683.9:ENST00000357479.10:ENST00000555358.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	76	2	3.22192	3.627885	4.03385	0.00360821	6.14604e-5	0.0533855	0.0064891
chr2	182958491	182958590	1285211	0	-	0.30303	(0.28,0.32]	chr2	135336	5	INTRON	INTRON	NCKAP1	ENSG00000061676.15	ENST00000361354.9:ENST00000360982.2:ENST00000495619.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	11	141	2	1.86335	3.6278500000000005	5.39235	0.00297126	0.0024844	0.0501295	0.0446195
chr2	24020857	24020947	707852	0	+	0.355556	(0.35,0.378]	chr2	82014	4	INTRON	INTRON	MFSD2B	ENSG00000205639.12	ENST00000669179.1:ENST00000406420.7:ENST00000338315.6:ENST00000469562.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	147	2	3.61985	3.62785	3.63585	6.38872e-5	3.53207e-5	0.00711194	0.00474674
chr10	833640	833738	4541592	0	-	0.479592	(0.476,0.515]	chr10	419243	23	INTRON	INTRON	LARP4B	ENSG00000107929.16	ENST00000688365.1:ENST00000316157.8:ENST00000690516.1:ENST00000689323.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	35	2	2.28264	3.627585	4.97253	0.0534132	0.00311573	0.179876	0.0498063
chr7	156637066	156637166	3685709	0	-	0.5	(0.476,0.515]	chr7	341962	151	INTRON	INTRON	LINC01006	ENSG00000182648.14	ENST00000651649.1:ENST00000652322.1:ENST00000656672.1:ENST00000661405.1:ENST00000656928.1:ENST00000661595.1:ENST00000656505.1:ENST00000447933.7:ENST00000660473.1:ENST00000671433.1:ENST00000656837.1:ENST00000663891.1:ENST00000458645.5:ENST00000418309.1:ENST00000664734.1	lncRNA	lncRNA	lncRNA	lncRNA	1	35	2	2.28264	3.627585	4.97253	0.0534132	0.00311573	0.179876	0.0498063
chr8	100946781	100946880	4005917	0	-	0.323232	(0.32,0.35]	chr8	366668	119	INTRON	INTRON	YWHAZ	ENSG00000164924.18	ENST00000395958.6:ENST00000395957.6:ENST00000457309.2:ENST00000395956.7:ENST00000353245.7:ENST00000521309.5:ENST00000522542.5:ENST00000395953.6:ENST00000395948.6:ENST00000395951.7:ENST00000419477.6:ENST00000521607.5:ENST00000480304.5:ENST00000518736.5:ENST00000517727.5:ENST00000521328.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	156	2	3.50028	3.627555	3.75483	1.55472e-4	1.89028e-5	0.0113474	0.00332465
chr15	41026504	41026602	6152313	0	-	0.357143	(0.35,0.378]	chr15	585291	28	INTRON	INTRON	INO80	ENSG00000128908.18	ENST00000648947.1:ENST00000401393.7:ENST00000558357.6:ENST00000559995.2:ENST00000557849.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	48	2	2.39583	3.627265	4.8587	0.0107976	0.00695662	0.0920575	0.0718189
chr18	9555420	9555520	6945704	0	-	0.36	(0.35,0.378]	chr18	686951	16	INTRON	INTRON	PPP4R1	ENSG00000154845.16	ENST00000400555.7:ENST00000400556.8:ENST00000285124.12:ENST00000584754.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	48	2	2.39583	3.627265	4.8587	0.0107976	0.00695662	0.0920575	0.0718189
chr7	124909973	124910073	3633578	0	-	0.37	(0.35,0.378]	chr7	337728	112	INTRON	INTRON	POT1	ENSG00000128513.16	ENST00000430927.6:ENST00000357628.8:ENST00000393329.5:ENST00000653274.1:ENST00000661898.1:ENST00000664330.1:ENST00000657892.1:ENST00000662531.1:ENST00000653241.1:ENST00000653892.1:ENST00000664366.1:ENST00000655761.1:ENST00000668382.1:ENST00000654766.1:ENST00000657333.1:ENST00000653819.1:ENST00000609106.5:ENST00000446993.6:ENST00000429326.6:ENST00000609702.5:ENST00000669195.1:ENST00000608437.5:ENST00000608261.5:ENST00000461288.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	48	2	2.39583	3.627265	4.8587	0.0107976	0.00695662	0.0920575	0.0718189
chr1	220008031	220008127	638793	0	-	0.510417	(0.476,0.515]	chr1	75258	3	INTRON	INTRON	EPRS1	ENSG00000136628.18	ENST00000366923.8:ENST00000609181.5:ENST00000477030.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	120	2	2.82251	3.62713	4.43175	6.78359e-4	5.97988e-6	0.023827	0.00171524
chr20	37292257	37292356	7266803	0	+	0.444444	(0.44,0.476]	chr20	738497	22	INTRON	INTRON	MANBAL	ENSG00000101363.13	ENST00000397150.5:ENST00000373606.8:ENST00000397152.7	protein_coding	protein_coding	protein_coding	protein_coding	2	49	2	1.9039	3.62711	5.35032	0.0501498	3.02713e-4	0.156383	0.0155054
chr8	109342909	109343007	3847555	0	+	0.316327	(0.28,0.32]	chr8	354372	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ENY2	ENSG00000120533.13	ENST00000521662.5:ENST00000522766.5:ENST00000517311.5:ENST00000339942.11:ENST00000520147.5:ENST00000521688.6:ENST00000522407.5:ENST00000523335.1:ENST00000517756.5:ENST00000517350.5:ENST00000523707.1:ENST00000521619.1:ENST00000518118.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	43	2	3.22074	3.627095	4.03345	0.0704058	0.00362783	0.184298	0.055479
chr4	150566019	150566119	2267225	0	-	0.45	(0.44,0.476]	chr4	220681	746	INTRON	INTRON	LRBA	ENSG00000198589.14	ENST00000357115.9:ENST00000651943.2:ENST00000510413.5:ENST00000503716.5:ENST00000509835.5:ENST00000648626.1:ENST00000651695.1:ENST00000651035.1:ENST00000507224.5:ENST00000513021.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	59	2	1.90381	3.627065	5.35032	0.0260626	3.02713e-4	0.122153	0.0155054
chr1	233663820	233663918	339043	0	+	0.591837	(0.57,1]	chr1	39456	15	INTRON	INTRON	KCNK1	ENSG00000135750.15	ENST00000366621.8:ENST00000472190.5:ENST00000366620.5:ENST00000487728.1:ENST00000446915.1:ENST00000472869.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	24	2	2.36411	3.6270450000000003	4.88998	0.0408868	4.016e-4	0.161534	0.0185763
chr10	914696	914796	4542417	0	-	0.58	(0.57,1]	chr10	419304	113	INTRON	INTRON	LARP4B	ENSG00000107929.16	ENST00000316157.8:ENST00000690516.1:ENST00000476529.5:ENST00000406525.6:ENST00000481118.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	24	2	2.36411	3.6270450000000003	4.88998	0.0408868	4.016e-4	0.161534	0.0185763
chr10	989148	989248	4379000	0	+	0.59	(0.57,1]	chr10	403815	2	SS5_PROX	SS5_PROX:INTRON	GTPBP4	ENSG00000107937.19	ENST00000360803.9:ENST00000491635.1:ENST00000360059.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	24	2	2.36411	3.6270450000000003	4.88998	0.0408868	4.016e-4	0.161534	0.0185763
chr1	203826214	203826313	296990	0	+	0.393939	(0.378,0.408]	chr1	34151	72	INTRON	INTRON	ZC3H11A:ZBED6	ENSG00000058673.17:ENSG00000257315.3	ENST00000367210.3:ENST00000453771.5:ENST00000638800.1:ENST00000367214.5:ENST00000639812.1:ENST00000367212.7:ENST00000332127.8:ENST00000550078.2:ENST00000495527.5:ENST00000640465.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	105	2	3.61158	3.6270350000000002	3.64249	8.34292e-4	2.75279e-5	0.0266389	0.00414532
chr16	89562620	89562707	6420899	0	+	0.471264	(0.44,0.476]	chr16	616321	3	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPL13	ENSG00000167526.14	ENST00000563749.1:ENST00000484610.5:ENST00000567815.5:ENST00000563270.5:ENST00000311528.10:ENST00000562879.5:ENST00000452368.7:ENST00000393099.3:ENST00000399461.8:ENST00000570149.1:ENST00000472354.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	69	2	1.90375	3.6270350000000002	5.35032	0.0156406	3.02713e-4	0.101393	0.0155054
chr3	6608241	6608341	1357326	0	+	0.48	(0.476,0.515]	chr3	142522	238	INTRON	INTRON	ENSG00000189229	ENSG00000189229.12	ENST00000433639.1:ENST00000655754.1:ENST00000658468.1:ENST00000669512.1:ENST00000667028.1:ENST00000655541.1:ENST00000668643.1:ENST00000671568.1:ENST00000671036.1:ENST00000669798.1:ENST00000655753.1:ENST00000655856.1:ENST00000658398.1:ENST00000661518.1:ENST00000661279.1:ENST00000655495.1:ENST00000663041.1:ENST00000659827.1:ENST00000667716.1:ENST00000668416.1:ENST00000658133.1:ENST00000342990.4:ENST00000660054.1:ENST00000671370.1	lncRNA	lncRNA	lncRNA	lncRNA	7	206	2	3.13832	3.62696	4.1156	1.99203e-5	1.21039e-6	0.00361261	6.40491e-4
chr2	144494065	144494164	1241545	0	-	0.59596	(0.57,1]	chr2	131732	119	INTRON	INTRON	ZEB2	ENSG00000169554.23	ENST00000636471.1:ENST00000627532.3:ENST00000638128.1:ENST00000637304.1:ENST00000636179.1:ENST00000419938.5:ENST00000409487.7:ENST00000636732.2:ENST00000636026.2:ENST00000675069.1:ENST00000689298.1:ENST00000539609.7:ENST00000558170.6:ENST00000303660.8:ENST00000427902.5:ENST00000637267.2:ENST00000392861.6:ENST00000431672.4:ENST00000409211.5:ENST00000465308.5:ENST00000434448.5:ENST00000472146.5:ENST00000461784.3:ENST00000476394.5:ENST00000637591.2:ENST00000479735.1:ENST00000453352.5:ENST00000435831.5:ENST00000444559.5:ENST00000630572.2:ENST00000484313.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	87	2	3.62111	3.62692	3.63273	1.27941e-5	1.50694e-6	0.00265999	8.03394e-4
chr5	176354974	176355070	2775235	0	-	0.479167	(0.476,0.515]	chr5	261327	12	INTRON	INTRON	KIAA1191	ENSG00000122203.15	ENST00000393725.6:ENST00000298569.9:ENST00000393728.6:ENST00000614420.4:ENST00000620366.4:ENST00000510164.5:ENST00000533553.5:ENST00000506983.5:ENST00000503082.5:ENST00000504688.5:ENST00000506668.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	46	2	2.48551	3.6268900000000004	4.76827	0.00756632	0.00600704	0.0773151	0.0674604
chr2	43890659	43890758	1109499	0	-	0.454545	(0.44,0.476]	chr2	118934	4	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	LRPPRC	ENSG00000138095.20	ENST00000260665.12:ENST00000682612.1:ENST00000684454.1:ENST00000682308.1:ENST00000682154.1:ENST00000683459.1:ENST00000683623.1:ENST00000683002.1:ENST00000682696.1:ENST00000683125.1:ENST00000683994.1:ENST00000684619.1:ENST00000683833.1:ENST00000682546.1:ENST00000683080.1:ENST00000681993.1:ENST00000682585.1:ENST00000683220.1:ENST00000683796.1:ENST00000682607.1:ENST00000683590.1:ENST00000684306.1:ENST00000683213.1:ENST00000683409.1:ENST00000684418.1:ENST00000682353.1:ENST00000682779.1:ENST00000684433.1:ENST00000682885.1:ENST00000419884.6:ENST00000684743.1:ENST00000463456.5:ENST00000683346.1:ENST00000683072.1:ENST00000682303.1:ENST00000683329.1:ENST00000683096.1:ENST00000682933.1:ENST00000684383.1:ENST00000682480.1:ENST00000684290.1:ENST00000682434.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	49	2	2.19078	3.62683	5.06288	0.0226089	0.00102416	0.117489	0.0294041
chr1	86865671	86865771	498623	0	-	0.34	(0.32,0.35]	chr1	59172	2	SS5_PROX	SS5_PROX:INTRON	SELENOF	ENSG00000183291.18	ENST00000331835.10:ENST00000370554.5:ENST00000648872.1:ENST00000469566.5:ENST00000401030.4:ENST00000497861.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	50	2	2.35591	3.6267950000000004	4.89768	0.0128129	0.00793135	0.0990564	0.076155
chrX	18301389	18301488	7770518	0	-	0.323232	(0.32,0.35]	chrX	794176	127	INTRON	INTRON	SCML2	ENSG00000102098.19	ENST00000251900.9	protein_coding	protein_coding	protein_coding	protein_coding	2	50	2	2.35591	3.6267950000000004	4.89768	0.0128129	0.00793135	0.0990564	0.076155
chr12	62560102	62560199	5152123	0	+	0.329897	(0.32,0.35]	chr12	487598	3	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	MON2	ENSG00000061987.16	ENST00000641654.1:ENST00000546600.5:ENST00000393630.8:ENST00000547095.5:ENST00000552738.5:ENST00000393629.6:ENST00000551307.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	77	2	1.787	3.62671	5.46642	0.0151818	0.00127669	0.108535	0.0326395
chr1	90986267	90986367	502170	0	-	0.28	[0,0.28]	chr1	59504	35	INTRON	INTRON	ZNF644	ENSG00000122482.22	ENST00000370440.5:ENST00000337393.10:ENST00000347275.9:ENST00000361321.5:ENST00000467231.5:ENST00000498303.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	42	2	2.63238	3.6266100000000003	4.62084	0.0313633	0.0259691	0.133676	0.13151
chr13	50954614	50954710	5499759	0	+	0.239583	[0,0.28]	chr13	526379	7	UTR3	UTR3:EXON_MRNA:INTRON	RNASEH2B	ENSG00000136104.21	ENST00000422660.6:ENST00000646731.1:ENST00000645188.1:ENST00000643774.1:ENST00000646279.1:ENST00000646960.1:ENST00000336617.8:ENST00000644297.1:ENST00000644034.1:ENST00000645955.1:ENST00000643682.1:ENST00000642721.1:ENST00000616907.2:ENST00000644420.1:ENST00000645990.1:ENST00000642995.1:ENST00000644183.1:ENST00000644425.1:ENST00000643159.1:ENST00000645618.1:ENST00000611510.5:ENST00000642454.1:ENST00000646709.1:ENST00000647387.1:ENST00000645712.1:ENST00000645333.1:ENST00000643215.1:ENST00000495244.7:ENST00000642207.1:ENST00000645370.1:ENST00000459681.3:ENST00000646339.1:ENST00000646964.1:ENST00000643405.1:ENST00000613449.4:ENST00000643529.1:ENST00000645912.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	42	2	2.63238	3.6266100000000003	4.62084	0.0313633	0.0259691	0.133676	0.13151
chr14	96539870	96539969	5810560	0	+	0.272727	[0,0.28]	chr14	550937	21	INTRON	INTRON	PAPOLA	ENSG00000090060.19	ENST00000216277.13:ENST00000553689.5:ENST00000392990.6:ENST00000555626.5:ENST00000554666.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	42	2	2.63238	3.6266100000000003	4.62084	0.0313633	0.0259691	0.133676	0.13151
chr21	39250989	39251089	7464899	0	-	0.21	[0,0.28]	chr21	760482	1	SS3_PROX	SS3_PROX:INTRON	BRWD1	ENSG00000185658.14	ENST00000333229.6:ENST00000342449.8:ENST00000446924.5:ENST00000380800.7:ENST00000430093.5:ENST00000445245.5:ENST00000445668.5:ENST00000412604.1:ENST00000455867.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	42	2	2.63238	3.6266100000000003	4.62084	0.0313633	0.0259691	0.133676	0.13151
chr4	53431482	53431582	1959996	0	+	0.2	[0,0.28]	chr4	196458	29	INTRON	INTRON	FIP1L1	ENSG00000145216.16	ENST00000337488.11:ENST00000358575.9:ENST00000306932.10:ENST00000505125.5:ENST00000513975.5:ENST00000514543.5:ENST00000513008.5:ENST00000504094.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	42	2	2.63238	3.6266100000000003	4.62084	0.0313633	0.0259691	0.133676	0.13151
chr7	123726320	123726420	3632434	0	-	0.28	[0,0.28]	chr7	337581	167	INTRON	INTRON	WASL	ENSG00000106299.8	ENST00000223023.5	protein_coding	protein_coding	protein_coding	protein_coding	1	42	2	2.63238	3.6266100000000003	4.62084	0.0313633	0.0259691	0.133676	0.13151
chr1	149833188	149833285	220065	0	+	0.329897	(0.32,0.35]	chr1	24772	3	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	H4C14	ENSG00000270882.3	ENST00000618193.1:ENST00000614272.1:ENST00000613412.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	11	406	2	2.95775	3.62658	4.29541	1.49052e-5	8.33907e-8	0.00290565	0.00012545000000000001
chr1	165832026	165832126	243793	0	+	0.49	(0.476,0.515]	chr1	29139	37	INTRON	INTRON	UCK2	ENSG00000143179.16	ENST00000367879.9:ENST00000642653.1	protein_coding	protein_coding	protein_coding	protein_coding	1	40	2	3.15202	3.626575	4.10113	0.0226984	0.00455841	0.124921	0.0595107
chr3	47780703	47780803	1685066	0	-	0.48	(0.476,0.515]	chr3	172122	74	INTRON	INTRON	SMARCC1	ENSG00000173473.11	ENST00000254480.10:ENST00000425518.5:ENST00000454240.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	40	2	3.15202	3.626575	4.10113	0.0226984	0.00455841	0.124921	0.0595107
chr4	126699910	126700010	2237709	0	-	0.4	(0.378,0.408]	chr4	219029	12	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	2	47	2	2.51464	3.626515	4.73839	0.00837252	0.00684341	0.0774402	0.0748032
chrX	9665208	9665307	7620671	0	+	0.383838	(0.378,0.408]	chrX	779994	84	INTRON	INTRON	TBL1X	ENSG00000101849.18	ENST00000407597.7:ENST00000380961.5:ENST00000424279.6:ENST00000645353.2:ENST00000422314.5:ENST00000645686.1:ENST00000646640.1:ENST00000647172.1:ENST00000452824.5:ENST00000683056.1:ENST00000647060.1	protein_coding	protein_coding	protein_coding	protein_coding	2	47	2	2.51464	3.626515	4.73839	0.00837252	0.00684341	0.0774402	0.0748032
chr17	30747145	30747245	6589959	0	+	0.45	(0.44,0.476]	chr17	640860	34	INTRON	INTRON	SUZ12P1	ENSG00000264538.7	ENST00000578070.5:ENST00000579526.5:ENST00000690405.1:ENST00000497969.6:ENST00000578195.6:ENST00000582557.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	1	38	2	2.9195	3.62648	4.33346	0.0120349	0.0102021	0.0962115	0.0850389
chr2	113188233	113188331	852570	0	+	0.459184	(0.44,0.476]	chr2	95646	16	INTRON	INTRON	PSD4	ENSG00000125637.16	ENST00000245796.11:ENST00000418251.6:ENST00000441564.7:ENST00000409656.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	38	2	2.9195	3.62648	4.33346	0.0120349	0.0102021	0.0962115	0.0850389
chr21	29352156	29352234	7392891	0	+	0.448718	(0.44,0.476]	chr21	753215	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	BACH1:BACH1-IT1	ENSG00000156273.16:ENSG00000248476.1	ENST00000422809.5:ENST00000468059.1:ENST00000504298.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	1	38	2	2.9195	3.62648	4.33346	0.0120349	0.0102021	0.0962115	0.0850389
chr19	49085904	49085981	7088373	0	+	0.493506	(0.476,0.515]	chr19	709520	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SNRNP70	ENSG00000104852.15	ENST00000601065.5:ENST00000598984.5:ENST00000598441.6:ENST00000401730.5:ENST00000221448.9:ENST00000597936.5:ENST00000595231.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	46	2	1.99341	3.62643	5.25945	0.037389	0.00111445	0.155878	0.0306328
chr7	74660367	74660467	3335273	0	+	0.51	(0.476,0.515]	chr7	310340	19	INTRON	INTRON	GTF2I	ENSG00000263001.8	ENST00000650807.1:ENST00000690345.1:ENST00000613513.1:ENST00000573035.6:ENST00000614986.4:ENST00000620879.4:ENST00000621734.4:ENST00000443166.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	46	2	1.99341	3.62643	5.25945	0.037389	0.00111445	0.155878	0.0306328
chr1	184869256	184869356	601995	0	-	0.45	(0.44,0.476]	chr1	71746	8	INTRON	INTRON	NIBAN1	ENSG00000135842.17	ENST00000367511.4	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	2.81896	3.626365	4.43377	0.0162803	0.0120766	0.101453	0.0962311
chr10	11561989	11562089	4555567	0	-	0.47	(0.44,0.476]	chr10	420447	299	INTRON	INTRON	USP6NL	ENSG00000148429.15	ENST00000609104.6:ENST00000379237.6	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	2.81896	3.626365	4.43377	0.0162803	0.0120766	0.101453	0.0962311
chr10	63242366	63242466	4633151	0	-	0.45	(0.44,0.476]	chr10	426215	220	INTRON	INTRON	JMJD1C	ENSG00000171988.20	ENST00000399262.7:ENST00000402544.5:ENST00000542921.5:ENST00000469152.5:ENST00000489372.4:ENST00000633035.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	34	2	2.81896	3.626365	4.43377	0.0162803	0.0120766	0.101453	0.0962311
chr6	90575098	90575197	3162677	0	-	0.262626	[0,0.28]	chr6	294985	29	INTRON	INTRON	MAP3K7	ENSG00000135341.18	ENST00000369332.7:ENST00000369327.7:ENST00000369325.7:ENST00000369329.8	protein_coding	protein_coding	protein_coding	protein_coding	1	44	2	2.95729	3.6263249999999996	4.29536	0.0590175	0.0101824	0.167915	0.089002
chr2	224514231	224514324	1335623	0	-	0.268817	[0,0.28]	chr2	140136	2	SS5_PROX	SS5_PROX:INTRON	CUL3	ENSG00000036257.14	ENST00000344951.8:ENST00000264414.9:ENST00000409096.5:ENST00000409777.5:ENST00000541548.5:ENST00000432260.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	42	2	2.36637	3.62631	4.88625	0.0500615	0.0173315	0.17488	0.104099
chr4	152529372	152529472	2275023	0	-	0.21	[0,0.28]	chr4	221124	396	INTRON	INTRON	FBXW7	ENSG00000109670.16	ENST00000281708.10:ENST00000603548.6:ENST00000604872.6:ENST00000647166.1:ENST00000643834.1:ENST00000642901.1	protein_coding	protein_coding	protein_coding	protein_coding	1	42	2	2.36637	3.62631	4.88625	0.0500615	0.0173315	0.17488	0.104099
chr7	92819499	92819599	3573090	0	-	0.28	[0,0.28]	chr7	332810	443	INTRON	INTRON	CDK6	ENSG00000105810.10	ENST00000424848.3:ENST00000265734.8	protein_coding	protein_coding	protein_coding	protein_coding	1	42	2	2.36637	3.62631	4.88625	0.0500615	0.0173315	0.17488	0.104099
chr7	129627981	129628081	3412284	0	+	0.27	[0,0.28]	chr7	319009	158	INTRON	INTRON	NRF1	ENSG00000106459.15	ENST00000393232.6:ENST00000477428.5:ENST00000454688.5:ENST00000223190.8:ENST00000311967.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	42	2	2.36637	3.62631	4.88625	0.0500615	0.0173315	0.17488	0.104099
chr1	16279629	16279729	381887	0	-	0.34	(0.32,0.35]	chr1	44869	225	INTRON	INTRON	FBXO42	ENSG00000037637.11	ENST00000375592.8	protein_coding	protein_coding	protein_coding	protein_coding	1	37	2	2.71269	3.626285	4.53988	0.0202178	0.0181461	0.114853	0.109913
chr16	3773054	3773152	6434989	0	-	0.346939	(0.32,0.35]	chr16	619497	17	INTRON	INTRON	CREBBP	ENSG00000005339.15	ENST00000262367.10:ENST00000382070.7:ENST00000570939.2	protein_coding	protein_coding	protein_coding	protein_coding	1	37	2	2.71269	3.626285	4.53988	0.0202178	0.0181461	0.114853	0.109913
chr2	15506512	15506612	1072613	0	-	0.33	(0.32,0.35]	chr2	114435	19	INTRON	INTRON	NBAS	ENSG00000151779.13	ENST00000281513.10:ENST00000427792.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	37	2	2.71269	3.626285	4.53988	0.0202178	0.0181461	0.114853	0.109913
chr6	160028764	160028859	3023569	0	+	0.347368	(0.32,0.35]	chr6	282043	11	INTRON	INTRON	IGF2R	ENSG00000197081.16	ENST00000676781.1:ENST00000677704.1:ENST00000356956.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	37	2	2.71269	3.626285	4.53988	0.0202178	0.0181461	0.114853	0.109913
chr9	123247056	123247156	4340266	0	-	0.33	(0.32,0.35]	chr9	398963	97	INTRON	INTRON	STRBP	ENSG00000165209.19	ENST00000348403.10:ENST00000360998.3:ENST00000407982.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	37	2	2.71269	3.626285	4.53988	0.0202178	0.0181461	0.114853	0.109913
chr3	42601064	42601163	1405975	0	+	0.686869	(0.57,1]	chr3	147650	1	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	NKTR	ENSG00000114857.19	ENST00000468735.6:ENST00000460910.5:ENST00000487466.5:ENST00000429888.5:ENST00000232978.13:ENST00000459950.1:ENST00000442970.5:ENST00000445842.1:ENST00000478488.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	31	2	2.05026	3.6262049999999997	5.20215	0.0321326	8.28896e-5	0.145026	0.00812487
chr5	54149382	54149482	2619303	0	-	0.31	(0.28,0.32]	chr5	248848	356	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2:ENST00000505630.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	67	2	2.38504	3.626175	4.86731	0.0116253	0.00475871	0.0889104	0.0636201
chr1	52391966	52392064	456942	0	-	0.326531	(0.32,0.35]	chr1	54887	23	INTRON	INTRON	ORC1	ENSG00000085840.13	ENST00000371568.8:ENST00000371566.1	protein_coding	protein_coding	protein_coding	protein_coding	1	37	2	2.48693	3.62597	4.76501	0.0338094	0.0114287	0.146709	0.0886611
chr15	28117933	28118031	6121924	0	-	0.336735	(0.32,0.35]	chr15	582977	9	EXON_MRNA	EXON_MRNA:INTRON	HERC2	ENSG00000128731.18	ENST00000261609.13:ENST00000650509.1:ENST00000568206.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	37	2	2.48693	3.62597	4.76501	0.0338094	0.0114287	0.146709	0.0886611
chr15	50345571	50345671	6171776	0	-	0.33	(0.32,0.35]	chr15	588159	184	INTRON	INTRON	GABPB1	ENSG00000104064.18	ENST00000380877.8:ENST00000220429.12:ENST00000543881.5:ENST00000396464.7:ENST00000429662.6:ENST00000359031.8:ENST00000560825.5:ENST00000558970.2	protein_coding	protein_coding	protein_coding	protein_coding	1	37	2	2.48693	3.62597	4.76501	0.0338094	0.0114287	0.146709	0.0886611
chr2	38316734	38316834	1098731	0	-	0.34	(0.32,0.35]	chr2	117843	10	INTRON	INTRON	ATL2	ENSG00000119787.14	ENST00000378954.9:ENST00000406122.5:ENST00000405384.6:ENST00000402054.5:ENST00000419554.6:ENST00000651368.1:ENST00000452935.6:ENST00000629272.2:ENST00000449130.5:ENST00000443098.5:ENST00000456736.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	37	2	2.48693	3.62597	4.76501	0.0338094	0.0114287	0.146709	0.0886611
chr16	307403	307502	6426402	0	-	0.464646	(0.44,0.476]	chr16	617488	26	INTRON	INTRON	AXIN1	ENSG00000103126.15	ENST00000262320.8:ENST00000461023.5:ENST00000354866.7:ENST00000481769.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	34	2	2.49112	3.6258999999999997	4.76068	0.0315968	0.00653414	0.144381	0.0699952
chr16	29583903	29584003	6471439	0	-	0.46	(0.44,0.476]	chr16	625297	142	INTRON	INTRON	ENSG00000288632:SMG1P2	ENSG00000288632.1:ENSG00000205534.6	ENST00000675579.1:ENST00000566127.1	lncRNA	lncRNA	lncRNA:transcribed_unprocessed_pseudogene	lncRNA:transcribed_unprocessed_pseudogene	1	34	2	2.49112	3.6258999999999997	4.76068	0.0315968	0.00653414	0.144381	0.0699952
chr2	70659062	70659161	1153205	0	-	0.454545	(0.44,0.476]	chr2	123197	24	UTR3	UTR3:EXON_MRNA:INTRON	ADD2	ENSG00000075340.23	ENST00000403045.6:ENST00000264436.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	34	2	2.49112	3.6258999999999997	4.76068	0.0315968	0.00653414	0.144381	0.0699952
chr20	35349770	35349870	7334573	0	-	0.45	(0.44,0.476]	chr20	747146	21	INTRON	INTRON	UQCC1	ENSG00000101019.22	ENST00000374380.6:ENST00000374394.7:ENST00000374384.6:ENST00000359226.6:ENST00000349714.9:ENST00000457259.5:ENST00000374385.10:ENST00000453855.5:ENST00000397556.7:ENST00000424405.5:ENST00000443429.5:ENST00000438533.5:ENST00000397554.5:ENST00000491125.5:ENST00000491040.5:ENST00000397553.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	34	2	2.49112	3.6258999999999997	4.76068	0.0315968	0.00653414	0.144381	0.0699952
chr7	16243791	16243891	3491673	0	-	0.47	(0.44,0.476]	chr7	326187	272	INTRON	INTRON	CRPPA	ENSG00000214960.11	ENST00000407010.7:ENST00000399310.3:ENST00000676325.1:ENST00000675257.1:ENST00000674759.1	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	2.49112	3.6258999999999997	4.76068	0.0315968	0.00653414	0.144381	0.0699952
chr8	55758594	55758693	3954518	0	-	0.454545	(0.44,0.476]	chr8	362686	18	INTRON	INTRON	TMEM68	ENSG00000167904.16	ENST00000617782.4:ENST00000334667.6:ENST00000434581.7:ENST00000519784.5:ENST00000523073.5:ENST00000519780.5:ENST00000522090.5:ENST00000520061.5:ENST00000522030.1:ENST00000523423.5:ENST00000520414.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	34	2	2.49112	3.6258999999999997	4.76068	0.0315968	0.00653414	0.144381	0.0699952
chr7	22604532	22604632	3499416	0	-	0.33	(0.32,0.35]	chr7	326644	314	INTRON	INTRON	STEAP1B	ENSG00000105889.16	ENST00000439708.1:ENST00000442252.1:ENST00000650428.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	39	2	3.07975	3.62578	4.17181	0.04531	0.00554235	0.149888	0.0674105
chr2	36943772	36943872	1094376	0	-	0.44	(0.408,0.44]	chr2	117221	182	INTRON	INTRON	STRN	ENSG00000115808.12	ENST00000263918.9:ENST00000379213.3	protein_coding	protein_coding	protein_coding	protein_coding	1	37	2	2.18807	3.62575	5.06343	0.0708044	0.00101725	0.184528	0.0293497
chr4	40078516	40078615	1954077	0	+	0.414141	(0.408,0.44]	chr4	195684	46	INTRON	INTRON	N4BP2	ENSG00000078177.14	ENST00000261435.11:ENST00000511480.5:ENST00000515550.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	37	2	2.18807	3.62575	5.06343	0.0708044	0.00101725	0.184528	0.0293497
chr9	228557	228657	4088204	0	+	0.42	(0.408,0.44]	chr9	372400	73	INTRON	INTRON	DOCK8	ENSG00000107099.18	ENST00000469197.5:ENST00000432829.7:ENST00000524396.5:ENST00000682121.1:ENST00000454469.6:ENST00000684384.1:ENST00000684166.1:ENST00000382329.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	37	2	2.18807	3.62575	5.06343	0.0708044	0.00101725	0.184528	0.0293497
chr19	47102900	47103000	7196005	0	-	0.46	(0.44,0.476]	chr19	729130	79	INTRON	INTRON	ZC3H4	ENSG00000130749.10	ENST00000253048.10:ENST00000594019.5:ENST00000597069.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	39	2	3.02751	3.6257200000000003	4.22393	0.0162322	0.00715968	0.109464	0.0723634
chr12	112040004	112040099	5414710	0	-	0.357895	(0.35,0.378]	chr12	517129	8	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	NAA25	ENSG00000111300.10	ENST00000261745.9:ENST00000552527.5:ENST00000549711.5:ENST00000550701.5:ENST00000551858.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	81	2	3.47933	3.625655	3.77198	0.0015613	2.78147e-4	0.0360352	0.0148626
chr15	61866358	61866456	6196163	0	-	0.244898	[0,0.28]	chr15	590497	22	UTR3	UTR3:EXON_MRNA:INTRON	VPS13C	ENSG00000129003.19	ENST00000249837.7:ENST00000644861.2:ENST00000650094.1:ENST00000645819.1:ENST00000649766.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	69	2	1.62313	3.62553	5.62793	0.0605286	0.0022037	0.191883	0.0417893
chr3	47690118	47690215	1684146	0	-	0.412371	(0.408,0.44]	chr3	172052	3	INTRON	INTRON	SMARCC1	ENSG00000173473.11	ENST00000254480.10:ENST00000425518.5:ENST00000462198.5:ENST00000485737.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	101	2	3.0946	3.625515	4.15643	7.51561e-4	3.06341e-5	0.0251179	0.00441979
chr1	1110648	1110747	358758	0	-	0.575758	(0.57,1]	chr1	41375	34	INTRON	INTRON	C1orf159	ENSG00000131591.18	ENST00000379339.5:ENST00000379325.7:ENST00000421241.7:ENST00000467751.5:ENST00000477196.5:ENST00000434641.5:ENST00000482816.5:ENST00000462097.5:ENST00000475119.5:ENST00000472741.5:ENST00000480643.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	42	2	3.5592	3.62544	3.69168	4.21089e-4	2.1608e-4	0.0183576	0.0134537
chr3	14169360	14169456	1619080	0	-	0.364583	(0.35,0.378]	chr3	167347	6	INTRON	INTRON	XPC	ENSG00000154767.15	ENST00000285021.12:ENST00000476581.6:ENST00000455144.6:ENST00000452172.1:ENST00000511155.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	39	2	2.66547	3.62542	4.58537	0.0233639	0.00703328	0.118323	0.0754576
chr4	1907543	1907641	1910939	0	+	0.357143	(0.35,0.378]	chr4	191747	28	INTRON	INTRON	NSD2	ENSG00000109685.19	ENST00000508803.6:ENST00000508355.5:ENST00000514045.5:ENST00000398261.6:ENST00000382891.9:ENST00000353275.9:ENST00000382892.6:ENST00000382895.7:ENST00000312087.10:ENST00000420906.6:ENST00000503128.5:ENST00000509115.5:ENST00000677559.1:ENST00000512700.2:ENST00000678714.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	39	2	2.66547	3.62542	4.58537	0.0233639	0.00703328	0.118323	0.0754576
chr7	158809561	158809660	3689614	0	-	0.363636	(0.35,0.378]	chr7	342421	101	INTRON	INTRON	ESYT2	ENSG00000117868.18	ENST00000251527.10:ENST00000275418.13:ENST00000652148.1:ENST00000483958.5:ENST00000497111.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	39	2	2.66547	3.62542	4.58537	0.0233639	0.00703328	0.118323	0.0754576
chr12	103834266	103834365	5401741	0	-	0.343434	(0.32,0.35]	chr12	515283	188	INTRON	INTRON	NT5DC3	ENSG00000111696.12	ENST00000392876.8	protein_coding	protein_coding	protein_coding	protein_coding	2	59	2	2.53107	3.6253849999999996	4.7197	0.00860484	0.00568521	0.0784134	0.0678837
chr12	46267782	46267863	5316515	0	-	0.580247	(0.57,1]	chr12	505753	2	INTRON	INTRON	SLC38A1	ENSG00000111371.16	ENST00000398637.10:ENST00000439706.5:ENST00000549049.5:ENST00000546893.5:ENST00000549633.5:ENST00000551506.1:ENST00000550173.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	65	2	2.96471	3.6251700000000002	4.28563	1.58729e-4	5.27255e-6	0.0108333	0.00170345
chr8	105484030	105484130	3838902	0	+	0.29	(0.28,0.32]	chr8	354063	324	INTRON	INTRON	ZFPM2	ENSG00000169946.14	ENST00000407775.7:ENST00000520492.5:ENST00000520027.5:ENST00000524235.5:ENST00000511341.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	53	2	1.90263	3.62514	5.34765	0.0503272	0.00287138	0.17488	0.0474836
chr18	55909340	55909440	6910188	0	+	0.4	(0.378,0.408]	chr18	684213	155	INTRON	INTRON	ENSG00000267327	ENSG00000267327.2	ENST00000589440.1	lncRNA	lncRNA	lncRNA	lncRNA	1	38	2	2.13703	3.62509	5.11315	0.0797592	9.26795e-4	0.19979	0.0278442
chr5	53957017	53957117	2617374	0	-	0.32	(0.28,0.32]	chr5	248835	450	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	63	2	1.85772	3.6250350000000005	5.39235	0.0300199	0.0024844	0.142135	0.0446195
chr11	5305336	5305421	4896263	0	-	0.411765	(0.408,0.44]	chr11	459151	3	EXON_LNCRNA	EXON_LNCRNA:INTRON	HBG2:ENSG00000239920:HBE1:OR51B5	ENSG00000196565.15:ENSG00000239920.2:ENSG00000213931.7:ENSG00000167355.8	ENST00000380252.6:ENST00000380259.7:ENST00000646569.1:ENST00000643199.1:ENST00000292896.3:ENST00000380237.5:ENST00000420726.6:ENST00000420465.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	37	2	2.71911	3.624995	4.53088	0.0189489	0.00669275	0.108861	0.0738715
chr12	50143577	50143670	5322926	0	-	0.430108	(0.408,0.44]	chr12	507489	5	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CERS5	ENSG00000139624.14	ENST00000317551.12:ENST00000422340.6:ENST00000551697.5:ENST00000380189.8:ENST00000547787.5:ENST00000551005.5:ENST00000438450.6:ENST00000542320.5:ENST00000547800.2:ENST00000548930.5:ENST00000551384.1:ENST00000549389.5:ENST00000550258.5:ENST00000547455.5:ENST00000546514.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	37	2	2.71911	3.624995	4.53088	0.0189489	0.00669275	0.108861	0.0738715
chr5	178207525	178207625	2559436	0	+	0.44	(0.408,0.44]	chr5	244645	3	SS5_PROX	SS5_PROX:INTRON	HNRNPAB	ENSG00000197451.12	ENST00000358344.8:ENST00000506339.5:ENST00000355836.9:ENST00000514633.5:ENST00000515193.5:ENST00000506259.5:ENST00000504898.5	protein_coding	protein_coding	protein_coding	protein_coding	1	37	2	2.71911	3.624995	4.53088	0.0189489	0.00669275	0.108861	0.0738715
chr9	136832537	136832635	4221997	0	+	0.632653	(0.57,1]	chr9	387706	2	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	RABL6	ENSG00000196642.19	ENST00000371671.9:ENST00000311502.12:ENST00000484471.6:ENST00000371663.10:ENST00000357466.6:ENST00000464941.5:ENST00000629216.2:ENST00000436380.5:ENST00000466096.5:ENST00000461992.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	58	2	2.81057	3.624995	4.43942	0.00169295	1.72912e-6	0.0381936	8.78167e-4
chr12	122085564	122085664	5239930	0	+	0.35	(0.32,0.35]	chr12	497496	59	INTRON	INTRON	MLXIP	ENSG00000175727.14	ENST00000319080.12	protein_coding	protein_coding	protein_coding	protein_coding	5	162	2	2.74507	3.6248050000000003	4.50454	6.0554e-4	5.92228e-6	0.0226059	0.00170648
chr5	139279484	139279572	2499230	0	+	0.465909	(0.44,0.476]	chr5	238882	5	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MATR3:SNHG4	ENSG00000280987.4:ENSG00000281398.4	ENST00000509990.5:ENST00000506147.5:ENST00000512107.5:ENST00000648842.1:ENST00000448190.6:ENST00000361059.7:ENST00000506188.5:ENST00000394800.6:ENST00000502929.5:ENST00000504203.5:ENST00000514694.5:ENST00000513259.5:ENST00000507197.5:ENST00000509644.5:ENST00000505016.2:ENST00000505522.6:ENST00000514110.5:ENST00000502394.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	12	340	2	3.16787	3.6247750000000005	4.08168	2.23464e-6	1.47897e-7	0.00104022	1.75426e-4
chr16	75363234	75363333	6528586	0	-	0.292929	(0.28,0.32]	chr16	632304	3	INTRON	INTRON	CFDP1	ENSG00000153774.9	ENST00000283882.4	protein_coding	protein_coding	protein_coding	protein_coding	1	39	2	2.73945	3.62463	4.50981	0.0275554	0.017681	0.123904	0.11319
chr12	49996252	49996347	5322367	0	-	0.421053	(0.408,0.44]	chr12	507338	14	INTRON	INTRON	RACGAP1	ENSG00000161800.13	ENST00000312377.10:ENST00000427314.6:ENST00000454520.6:ENST00000551016.5:ENST00000547905.5:ENST00000549342.1	protein_coding	protein_coding	protein_coding	protein_coding	3	103	2	3.52471	3.624535	3.72436	0.00112428	1.56427e-5	0.0306963	0.00298427
chr5	6755644	6755744	2316277	0	+	0.61	(0.57,1]	chr5	224338	8	UTR3	UTR3:EXON_MRNA	TENT4A	ENSG00000112941.14	ENST00000230859.8	protein_coding	protein_coding	protein_coding	protein_coding	13	177	2	2.88505	3.62453	4.36401	1.06326e-6	1.37167e-9	6.35623e-4	9.62247e-6
chr10	31841880	31841978	4589447	0	-	0.316327	(0.28,0.32]	chr10	423139	18	INTRON	INTRON	ARHGAP12	ENSG00000165322.18	ENST00000344936.7:ENST00000375245.8:ENST00000396144.8:ENST00000375250.9:ENST00000311380.8:ENST00000497103.1:ENST00000454919.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	54	2	2.51426	3.6245000000000003	4.73474	0.0162835	0.00781326	0.101453	0.0788246
chr22	17600195	17600294	7547529	0	-	0.494949	(0.476,0.515]	chr22	771434	1	SS3_PROX	SS3_PROX:INTRON	ATP6V1E1	ENSG00000131100.13	ENST00000253413.10:ENST00000399796.6:ENST00000399798.6:ENST00000413576.1:ENST00000481365.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	34	2	2.80729	3.624285	4.44128	0.0151924	0.0126008	0.0994339	0.0980703
chr3	149049831	149049931	1840621	0	-	0.48	(0.476,0.515]	chr3	185120	2	SS5_PROX	SS5_PROX:INTRON	HLTF	ENSG00000071794.16	ENST00000310053.10:ENST00000465259.5:ENST00000392912.6:ENST00000494055.5:ENST00000467858.1	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	2.80729	3.624285	4.44128	0.0151924	0.0126008	0.0994339	0.0980703
chr7	120974427	120974527	3393604	0	+	0.36	(0.35,0.378]	chr7	317655	3	SS3_PROX	SS3_PROX:INTRON	ING3	ENSG00000071243.16	ENST00000315870.10:ENST00000427726.5:ENST00000431467.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	37	2	3.05136	3.62423	4.1971	0.0367539	0.00578894	0.138959	0.0684334
chr7	139696552	139696652	3658020	0	-	0.36	(0.35,0.378]	chr7	339537	645	INTRON	INTRON	HIPK2	ENSG00000064393.16	ENST00000406875.8:ENST00000428878.6:ENST00000342645.7	protein_coding	protein_coding	protein_coding	protein_coding	1	37	2	3.05136	3.62423	4.1971	0.0367539	0.00578894	0.138959	0.0684334
chr19	9670244	9670343	7133456	0	-	0.292929	(0.28,0.32]	chr19	718911	90	INTRON	INTRON	ZNF562	ENSG00000171466.10	ENST00000453372.7:ENST00000293648.8:ENST00000590155.5:ENST00000585688.5:ENST00000587392.5:ENST00000588653.5:ENST00000589542.1:ENST00000585350.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	39	2	2.38101	3.62416	4.86731	0.0456017	0.0116253	0.164236	0.0889104
chr8	97647984	97648084	3809097	0	+	0.32	(0.28,0.32]	chr8	352836	27	INTRON	INTRON	MTDH	ENSG00000147649.10	ENST00000336273.8:ENST00000519934.5:ENST00000522313.1	protein_coding	protein_coding	protein_coding	protein_coding	1	39	2	2.38101	3.62416	4.86731	0.0456017	0.0116253	0.164236	0.0889104
chr9	137691319	137691419	4224209	0	+	0.3	(0.28,0.32]	chr9	388206	56	INTRON	INTRON	EHMT1	ENSG00000181090.21	ENST00000462484.5:ENST00000371394.6:ENST00000630754.2:ENST00000460843.6:ENST00000626216.2:ENST00000629335.2:ENST00000637335.1:ENST00000636376.1:ENST00000637655.1:ENST00000636027.1:ENST00000492232.5:ENST00000460486.3:ENST00000636081.1:ENST00000637161.1:ENST00000629417.1:ENST00000637662.1:ENST00000636186.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	39	2	2.38101	3.62416	4.86731	0.0456017	0.0116253	0.164236	0.0889104
chr9	130790553	130790653	4214630	0	+	0.35	(0.32,0.35]	chr9	386427	757	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000393293.4	protein_coding	protein_coding	protein_coding	protein_coding	3	124	2	2.82385	3.624045	4.42424	0.00217392	2.43941e-5	0.043502	0.00406051
chr1	193135789	193135889	284748	0	+	0.27	[0,0.28]	chr1	32766	2	SS5_PROX	SS5_PROX:INTRON	CDC73	ENSG00000134371.14	ENST00000649895.1:ENST00000643006.1:ENST00000367435.5:ENST00000650197.1:ENST00000643784.1:ENST00000648071.1:ENST00000635846.1:ENST00000649606.1:ENST00000647662.1:ENST00000482484.1:ENST00000649706.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	57	2	2.24546	3.6240449999999997	5.00263	0.0206502	0.013055	0.122348	0.093385
chr19	331366	331464	7109479	0	-	0.438776	(0.408,0.44]	chr19	713815	6	INTRON	INTRON	MIER2	ENSG00000105556.12	ENST00000264819.7:ENST00000635755.1:ENST00000586994.7:ENST00000621180.4:ENST00000592722.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	47	2	2.64829	3.62404	4.59979	0.0109537	0.00400062	0.0873034	0.057767
chr8	67067009	67067108	3776644	0	+	0.50505	(0.476,0.515]	chr8	350226	21	INTRON	INTRON	CSPP1	ENSG00000104218.16	ENST00000676113.1:ENST00000675306.2:ENST00000678156.1:ENST00000262210.11:ENST00000678017.1:ENST00000675869.1:ENST00000521919.6:ENST00000678542.1:ENST00000677619.1:ENST00000676605.1:ENST00000676471.1:ENST00000677256.1:ENST00000676847.1:ENST00000677009.1:ENST00000675820.1:ENST00000676317.1:ENST00000677592.1:ENST00000676573.1:ENST00000678318.1:ENST00000677473.1:ENST00000674993.1:ENST00000678553.1:ENST00000678927.1:ENST00000678204.1:ENST00000679226.1:ENST00000676882.1:ENST00000675955.1:ENST00000678728.1:ENST00000677430.1:ENST00000677455.1:ENST00000677071.1:ENST00000678616.1:ENST00000678362.1:ENST00000679112.1:ENST00000678645.1:ENST00000676567.1:ENST00000677845.1:ENST00000519701.5:ENST00000519163.6:ENST00000676858.1:ENST00000678747.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	47	2	2.63396	3.62399	4.61402	0.00947755	0.00426634	0.0817766	0.0596808
chr11	14290086	14290186	4916972	0	-	0.43	(0.408,0.44]	chr11	460774	80	INTRON	INTRON	RRAS2	ENSG00000133818.14	ENST00000256196.9:ENST00000537760.5:ENST00000414023.6:ENST00000529237.5:ENST00000534746.5:ENST00000526063.5:ENST00000532814.5:ENST00000531807.5:ENST00000532950.5:ENST00000531421.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	76	2	3.55215	3.6239350000000004	3.69572	7.01039e-4	5.37849e-4	0.0241881	0.0214775
chr7	99032342	99032439	3582007	0	-	0.494845	(0.476,0.515]	chr7	333598	13	INTRON	INTRON	SMURF1	ENSG00000198742.10	ENST00000361368.7:ENST00000361125.1	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	2.47949	3.62388	4.76827	0.0326974	0.00600704	0.145164	0.0674604
chr9	92713958	92714058	4288276	0	-	0.51	(0.476,0.515]	chr9	394463	6	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	BICD2	ENSG00000185963.14	ENST00000356884.11:ENST00000375512.3	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	2.47949	3.62388	4.76827	0.0326974	0.00600704	0.145164	0.0674604
chr9	121340713	121340811	4336649	0	-	0.44898	(0.44,0.476]	chr9	398479	12	UTR3	UTR3:EXON_MRNA:INTRON	STOM	ENSG00000148175.13	ENST00000286713.7:ENST00000538954.5:ENST00000347359.3	protein_coding	protein_coding	protein_coding	protein_coding	3	56	2	2.34775	3.623875	4.9	0.00466011	0.00423315	0.0629753	0.0572185
chr10	72593455	72593555	4646605	0	-	0.43	(0.408,0.44]	chr10	427462	263	INTRON	INTRON	MICU1	ENSG00000107745.20	ENST00000361114.10:ENST00000642044.1:ENST00000635239.1:ENST00000604238.2:ENST00000603011.5:ENST00000604025.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	34	2	2.82042	3.623775	4.42713	0.0173083	0.0120121	0.104099	0.0962115
chr4	2838809	2838908	1914999	0	+	0.434343	(0.408,0.44]	chr4	192238	51	UTR3	UTR3:EXON_MRNA	SH3BP2	ENSG00000087266.17	ENST00000503393.8:ENST00000435136.8:ENST00000356331.9	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	2.82042	3.623775	4.42713	0.0173083	0.0120121	0.104099	0.0962115
chr5	132933368	132933461	2724964	0	-	0.408602	(0.408,0.44]	chr5	256333	8	INTRON	INTRON	AFF4	ENSG00000072364.13	ENST00000265343.10:ENST00000378595.7:ENST00000425658.1:ENST00000378593.6:ENST00000491831.5:ENST00000465484.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	34	2	2.82042	3.623775	4.42713	0.0173083	0.0120121	0.104099	0.0962115
chr5	143336641	143336741	2741859	0	-	0.42	(0.408,0.44]	chr5	258577	221	INTRON	INTRON	NR3C1	ENSG00000113580.15	ENST00000343796.6:ENST00000394464.7:ENST00000415690.6:ENST00000424646.6:ENST00000504572.5:ENST00000394466.6:ENST00000231509.7:ENST00000652686.1:ENST00000503201.1:ENST00000504336.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	34	2	2.82042	3.623775	4.42713	0.0173083	0.0120121	0.104099	0.0962115
chr12	91564649	91564749	5384863	0	-	0.25	[0,0.28]	chr12	513485	574	INTRON	INTRON	ENSG00000289605	ENSG00000289605.1	ENST00000685093.1	lncRNA	lncRNA	lncRNA	lncRNA	2	57	2	1.8986	3.6237500000000002	5.3489	0.0531512	0.00514751	0.179787	0.062965
chr6	135201174	135201265	2962366	0	+	0.21978	[0,0.28]	chr6	278641	1	SS3_PROX	SS3_PROX:INTRON	MYB	ENSG00000118513.20	ENST00000341911.10:ENST00000442647.7:ENST00000316528.12:ENST00000616088.4:ENST00000339290.9:ENST00000367812.6:ENST00000463282.6:ENST00000525477.5:ENST00000533837.5:ENST00000367814.8:ENST00000527615.5:ENST00000525369.5:ENST00000438901.6:ENST00000525514.5:ENST00000526320.5:ENST00000526889.5:ENST00000529586.5:ENST00000531519.5:ENST00000533808.5:ENST00000528343.5:ENST00000524588.5:ENST00000525002.5:ENST00000525940.5:ENST00000526187.5:ENST00000526565.5:ENST00000528015.5:ENST00000528140.5:ENST00000528345.5:ENST00000528774.5:ENST00000529262.5:ENST00000531634.5:ENST00000531737.5:ENST00000533384.5:ENST00000533624.5:ENST00000534044.5:ENST00000534121.5:ENST00000531845.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	57	2	1.8986	3.6237500000000002	5.3489	0.0531512	0.00514751	0.179787	0.062965
chr2	61459167	61459267	1130438	0	-	0.29	(0.28,0.32]	chr2	121499	380	INTRON	INTRON	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000453133.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	63	2	1.94591	3.6237199999999996	5.30153	0.0228482	0.00332518	0.125519	0.0512081
chr16	84746869	84746969	6410382	0	+	0.22	[0,0.28]	chr16	615303	8	INTRON	INTRON	USP10	ENSG00000103194.16	ENST00000540269.6:ENST00000563892.5:ENST00000219473.12:ENST00000570191.5:ENST00000563048.5:ENST00000569038.5:ENST00000570053.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	46	2	2.27119	3.62369	4.97619	0.070351	0.00535756	0.184298	0.0663076
chr8	27824304	27824404	3927196	0	-	0.28	[0,0.28]	chr8	359598	7	INTRON	INTRON	PBK	ENSG00000168078.10	ENST00000301905.9:ENST00000522944.5:ENST00000524266.1:ENST00000521226.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	46	2	2.27119	3.62369	4.97619	0.070351	0.00535756	0.184298	0.0663076
chr16	57188447	57188547	6361307	0	+	0.32	(0.28,0.32]	chr16	610647	10	INTRON	INTRON	RSPRY1	ENSG00000159579.14	ENST00000562439.5:ENST00000564435.5:ENST00000562959.1:ENST00000568505.6:ENST00000566352.1:ENST00000394420.9:ENST00000537866.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	59	2	2.22069	3.6236749999999995	5.02666	0.0243177	0.0027935	0.12011	0.0488769
chr19	55043704	55043804	7100597	0	+	0.46	(0.44,0.476]	chr19	712222	2	SS3_PROX	SS3_PROX:INTRON	GP6-AS1	ENSG00000267265.6	ENST00000593060.5:ENST00000586961.1	lncRNA	lncRNA	lncRNA	lncRNA	3	55	2	1.75627	3.62362	5.49097	0.0380723	4.8612e-4	0.157702	0.0203841
chr9	131421506	131421605	4217244	0	+	0.444444	(0.44,0.476]	chr9	386720	269	INTRON	INTRON	PRRC2B	ENSG00000288701.1	ENST00000682525.1:ENST00000684596.1:ENST00000683519.1:ENST00000682501.1	protein_coding	protein_coding	protein_coding	protein_coding	3	55	2	1.75627	3.62362	5.49097	0.0380723	4.8612e-4	0.157702	0.0203841
chr17	59916095	59916194	6644001	0	+	0.515152	(0.476,0.515]	chr17	648827	10	INTRON	INTRON	RPS6KB1	ENSG00000108443.14	ENST00000393021.7:ENST00000472940.5:ENST00000225577.9:ENST00000443572.6:ENST00000489824.1:ENST00000406116.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	36	2	2.63168	3.6234349999999997	4.61519	0.0237106	0.00528365	0.118716	0.0656295
chr19	11603809	11603909	7018081	0	+	0.5	(0.476,0.515]	chr19	697689	2	SS3_PROX	SS3_PROX:INTRON	ZNF627	ENSG00000198551.10	ENST00000593279.5:ENST00000585493.5:ENST00000587939.5:ENST00000361113.10:ENST00000588174.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	36	2	2.63168	3.6234349999999997	4.61519	0.0237106	0.00528365	0.118716	0.0656295
chr5	177327173	177327273	2777354	0	-	0.49	(0.476,0.515]	chr5	261667	90	INTRON	INTRON	LMAN2	ENSG00000169223.16	ENST00000694903.1	protein_coding	processed_transcript	protein_coding	processed_transcript	1	36	2	2.63168	3.6234349999999997	4.61519	0.0237106	0.00528365	0.118716	0.0656295
chr17	57434109	57434209	6634535	0	+	0.55	(0.515,0.57]	chr17	648049	16	INTRON	INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000674961.1:ENST00000582453.5:ENST00000675656.1:ENST00000322684.7:ENST00000442934.6:ENST00000579180.2:ENST00000579205.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	31	2	2.83188	3.62343	4.41498	0.0108207	0.0106866	0.0920575	0.0861859
chr2	144446774	144446874	1241064	0	-	0.52	(0.515,0.57]	chr2	131703	159	INTRON	INTRON	ZEB2	ENSG00000169554.23	ENST00000636471.1:ENST00000627532.3:ENST00000638128.1:ENST00000637304.1:ENST00000636179.1:ENST00000636820.1:ENST00000637045.1:ENST00000419938.5:ENST00000409487.7:ENST00000440875.6:ENST00000636732.2:ENST00000636026.2:ENST00000675069.1:ENST00000689298.1:ENST00000539609.7:ENST00000558170.6:ENST00000303660.8:ENST00000427902.5:ENST00000637267.2:ENST00000392861.6:ENST00000431672.4:ENST00000409211.5:ENST00000465308.5:ENST00000434448.5:ENST00000472146.5:ENST00000461784.3:ENST00000476394.5:ENST00000637591.2:ENST00000479735.1:ENST00000453352.5:ENST00000435831.5:ENST00000444559.5:ENST00000630572.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	31	2	2.83188	3.62343	4.41498	0.0108207	0.0106866	0.0920575	0.0861859
chr3	17731244	17731344	1630320	0	-	0.52	(0.515,0.57]	chr3	168275	290	INTRON	INTRON	TBC1D5	ENSG00000131374.15	ENST00000253692.11:ENST00000696125.1:ENST00000414318.2:ENST00000429383.8:ENST00000415814.6:ENST00000452492.6:ENST00000412981.5:ENST00000428355.5:ENST00000425944.5:ENST00000430169.5:ENST00000445294.5:ENST00000414349.5:ENST00000443499.6:ENST00000444756.5:ENST00000497531.5:ENST00000443386.5:ENST00000446863.5:ENST00000444471.5:ENST00000481396.5:ENST00000423331.6:ENST00000485432.1:ENST00000471679.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	31	2	2.83188	3.62343	4.41498	0.0108207	0.0106866	0.0920575	0.0861859
chr4	151011405	151011504	2271733	0	-	0.545455	(0.515,0.57]	chr4	220921	820	INTRON	INTRON	LRBA	ENSG00000198589.14	ENST00000357115.9:ENST00000651943.2:ENST00000510413.5:ENST00000651035.1:ENST00000507224.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	31	2	2.83188	3.62343	4.41498	0.0108207	0.0106866	0.0920575	0.0861859
chr6	147681835	147681935	2990814	0	+	0.54	(0.515,0.57]	chr6	280163	53	INTRON	INTRON	ENSG00000227681	ENSG00000227681.5	ENST00000427015.1:ENST00000432506.5:ENST00000442094.5	lncRNA	lncRNA	lncRNA	lncRNA	1	31	2	2.83188	3.62343	4.41498	0.0108207	0.0106866	0.0920575	0.0861859
chr6	157897398	157897498	3016510	0	+	0.54	(0.515,0.57]	chr6	281390	4	SS5_PROX	SS5_PROX:INTRON	SNX9	ENSG00000130340.17	ENST00000680863.1:ENST00000679814.1:ENST00000680464.1:ENST00000681186.1:ENST00000679732.1:ENST00000681183.1:ENST00000681534.1:ENST00000681651.1:ENST00000680089.1:ENST00000680078.1:ENST00000680974.1:ENST00000680095.1:ENST00000680015.1:ENST00000681138.1:ENST00000392185.8:ENST00000679790.1:ENST00000680495.1:ENST00000679691.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	31	2	2.83188	3.62343	4.41498	0.0108207	0.0106866	0.0920575	0.0861859
chr8	94740684	94740783	3799460	0	+	0.525253	(0.515,0.57]	chr8	352228	5	INTRON	INTRON	DPY19L4	ENSG00000156162.16	ENST00000414645.6:ENST00000519176.5:ENST00000521525.1:ENST00000523020.1	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	2.83188	3.62343	4.41498	0.0108207	0.0106866	0.0920575	0.0861859
chr11	3814502	3814601	4723313	0	+	0.414141	(0.408,0.44]	chr11	437069	27	INTRON	INTRON	PGAP2	ENSG00000148985.20	ENST00000528216.5:ENST00000300730.10:ENST00000396986.6:ENST00000532535.5:ENST00000396993.8:ENST00000465237.6:ENST00000477358.6:ENST00000532523.5:ENST00000459679.5:ENST00000464229.5:ENST00000490830.5:ENST00000464261.5:ENST00000464906.6:ENST00000524661.5:ENST00000485602.5:ENST00000475884.5:ENST00000489571.5:ENST00000464441.5:ENST00000532017.5:ENST00000465307.6:ENST00000493547.6:ENST00000495026.5:ENST00000534498.1:ENST00000396991.6:ENST00000525937.1:ENST00000478773.5:ENST00000278243.9:ENST00000483829.5:ENST00000487112.5:ENST00000463452.6:ENST00000496834.6:ENST00000479072.5:ENST00000469307.4:ENST00000464590.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	34	2	2.49258	3.6232800000000003	4.75398	0.0314608	0.00703931	0.144381	0.0718189
chr12	25249556	25249655	5298373	0	-	0.424242	(0.408,0.44]	chr12	503953	38	INTRON	INTRON	KRAS	ENSG00000133703.14	ENST00000256078.10:ENST00000311936.8:ENST00000686877.1:ENST00000685328.1:ENST00000693229.1:ENST00000687356.1:ENST00000692768.1:ENST00000688940.1:ENST00000690804.1:ENST00000557334.6:ENST00000686969.1:ENST00000556131.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	34	2	2.49258	3.6232800000000003	4.75398	0.0314608	0.00703931	0.144381	0.0718189
chr15	58995803	58995903	6038963	0	+	0.44	(0.408,0.44]	chr15	574972	70	INTRON	INTRON	RNF111	ENSG00000157450.16	ENST00000559757.1:ENST00000348370.9:ENST00000559160.1:ENST00000559209.5:ENST00000557998.5	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	2.49258	3.6232800000000003	4.75398	0.0314608	0.00703931	0.144381	0.0718189
chr15	64657790	64657890	6046065	0	+	0.41	(0.408,0.44]	chr15	575712	30	INTRON	INTRON	ZNF609	ENSG00000180357.10	ENST00000326648.5:ENST00000558680.5:ENST00000559364.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	34	2	2.49258	3.6232800000000003	4.75398	0.0314608	0.00703931	0.144381	0.0718189
chr17	20030893	20030993	6572002	0	+	0.41	(0.408,0.44]	chr17	639055	124	INTRON	INTRON	SPECC1	ENSG00000128487.19	ENST00000677148.1:ENST00000679048.1:ENST00000678019.1:ENST00000678315.1:ENST00000678321.1:ENST00000676570.1:ENST00000678651.1:ENST00000679049.1:ENST00000472876.5:ENST00000467722.3:ENST00000583528.6:ENST00000680019.1:ENST00000395527.9:ENST00000681593.1:ENST00000680830.1:ENST00000680124.1:ENST00000583482.7:ENST00000679255.1:ENST00000681202.1:ENST00000677914.1:ENST00000578321.2:ENST00000680374.1:ENST00000583463.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	34	2	2.49258	3.6232800000000003	4.75398	0.0314608	0.00703931	0.144381	0.0718189
chr2	17749612	17749710	1074065	0	-	0.489796	(0.476,0.515]	chr2	114655	33	INTRON	INTRON	SMC6	ENSG00000163029.16	ENST00000351948.8:ENST00000448223.7:ENST00000402989.5:ENST00000446852.5:ENST00000621152.4:ENST00000428868.1	protein_coding	protein_coding	protein_coding	protein_coding	6	194	2	3.49369	3.6232800000000003	3.75287	1.0028e-5	3.58264e-6	0.00230433	0.0013551
chr5	112765225	112765325	2452163	0	+	0.43	(0.408,0.44]	chr5	234920	98	INTRON	INTRON	APC	ENSG00000134982.17	ENST00000509732.5:ENST00000505350.1:ENST00000507379.5:ENST00000257430.9:ENST00000508624.5:ENST00000508376.6:ENST00000512211.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	34	2	2.49258	3.6232800000000003	4.75398	0.0314608	0.00703931	0.144381	0.0718189
chr11	9395893	9395992	4729523	0	+	0.494949	(0.476,0.515]	chr11	437827	32	INTRON	INTRON	IPO7	ENSG00000205339.10	ENST00000379719.8:ENST00000533233.1:ENST00000527431.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	47	2	1.8388	3.623245	5.40769	0.0564473	6.23078e-4	0.184423	0.0229151
chr1	246923059	246923159	681874	0	-	0.33	(0.32,0.35]	chr1	80043	43	INTRON	INTRON	AHCTF1	ENSG00000153207.16	ENST00000648844.2:ENST00000326225.3:ENST00000366508.5	protein_coding	protein_coding	protein_coding	protein_coding	3	116	2	3.55046	3.6231400000000002	3.69582	7.3931e-4	6.1414e-5	0.0249744	0.0064891
chr12	8777389	8777489	5072787	0	+	0.35	(0.32,0.35]	chr12	479574	3	SS3_PROX	SS3_PROX:INTRON	RIMKLB	ENSG00000166532.16	ENST00000544257.5:ENST00000299673.5:ENST00000619374.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	116	2	3.55046	3.6231400000000002	3.69582	7.3931e-4	6.1414e-5	0.0249744	0.0064891
chr17	82877327	82877426	6695476	0	+	0.434343	(0.408,0.44]	chr17	654939	66	INTRON	INTRON	TBCD	ENSG00000141556.22	ENST00000682479.1:ENST00000682722.1:ENST00000684464.1:ENST00000684544.1:ENST00000681983.1:ENST00000684361.1:ENST00000683184.1:ENST00000683282.1:ENST00000684408.1:ENST00000355528.9:ENST00000683444.1:ENST00000684776.1:ENST00000683041.1:ENST00000684760.1:ENST00000684349.1:ENST00000682213.1:ENST00000683009.1:ENST00000682921.1:ENST00000539345.6:ENST00000684000.1:ENST00000684188.1:ENST00000684429.1:ENST00000682610.1:ENST00000683821.1:ENST00000682654.1:ENST00000576160.6:ENST00000571712.5:ENST00000576996.5:ENST00000574801.5:ENST00000683584.1:ENST00000682099.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	47	2	1.85305	3.623125	5.3932	0.0543543	7.81492e-4	0.182243	0.0257168
chr1	21863205	21863303	397369	0	-	0.561224	(0.515,0.57]	chr1	47604	7	INTRON	INTRON	HSPG2	ENSG00000142798.20	ENST00000374695.8	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	2.56306	3.62308	4.6831	0.0247751	0.00471288	0.131869	0.0600108
chr2	66435581	66435673	799620	0	+	0.532609	(0.515,0.57]	chr2	89404	6	UTR5	UTR5:EXON_MRNA:INTRON	MEIS1	ENSG00000143995.20	ENST00000496248.5:ENST00000272369.14:ENST00000560281.6:ENST00000491706.5:ENST00000488550.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	31	2	2.56306	3.62308	4.6831	0.0247751	0.00471288	0.131869	0.0600108
chr22	49613846	49613946	7602219	0	-	0.55	(0.515,0.57]	chr22	778570	182	INTRON	INTRON	MIR3667HG	ENSG00000188511.13	ENST00000414287.5:ENST00000416411.1:ENST00000689875.1	lncRNA	lncRNA	lncRNA	lncRNA	1	31	2	2.56306	3.62308	4.6831	0.0247751	0.00471288	0.131869	0.0600108
chr6	157940493	157940590	3016959	0	+	0.536082	(0.515,0.57]	chr6	281452	19	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	SNX9	ENSG00000130340.17	ENST00000680863.1:ENST00000679814.1:ENST00000680464.1:ENST00000681186.1:ENST00000679732.1:ENST00000681183.1:ENST00000681534.1:ENST00000681651.1:ENST00000680089.1:ENST00000680078.1:ENST00000680974.1:ENST00000681138.1:ENST00000392185.8:ENST00000679790.1:ENST00000680495.1:ENST00000679691.1:ENST00000681881.1:ENST00000681469.1:ENST00000680680.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	31	2	2.56306	3.62308	4.6831	0.0247751	0.00471288	0.131869	0.0600108
chr16	30231239	30231339	6472411	0	-	0.33	(0.32,0.35]	chr16	625530	4	SS5_PROX	SS5_PROX:INTRON	NPIPB13	ENSG00000198064.14	ENST00000520915.5:ENST00000562937.5:ENST00000618637.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	41	2	2.68921	3.62291	4.55661	0.0230336	0.00927858	0.118056	0.0855292
chrX	154073805	154073905	7912859	0	-	0.43	(0.408,0.44]	chrX	805637	3	INTRON	INTRON	MECP2	ENSG00000169057.24	ENST00000303391.11:ENST00000453960.7:ENST00000628176.2:ENST00000407218.5:ENST00000369957.5:ENST00000631210.1:ENST00000496908.5:ENST00000415944.3:ENST00000630151.2:ENST00000676382.1:ENST00000611468.2:ENST00000637533.1:ENST00000675526.1:ENST00000637791.1:ENST00000675841.1:ENST00000674996.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	68	2	1.44993	3.62289	5.79585	0.0638951	3.36399e-5	0.177824	0.00463632
chr17	32476772	32476865	6598677	0	+	0.483871	(0.476,0.515]	chr17	642013	2	EXON_MRNA	EXON_MRNA:INTRON	PSMD11	ENSG00000108671.11	ENST00000649012.1:ENST00000457654.6:ENST00000578397.5:ENST00000261712.8:ENST00000584340.1:ENST00000493026.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	99	2	3.23946	3.6227099999999997	4.00596	2.59571e-4	1.1409e-4	0.014326	0.00960783
chr1	241851438	241851526	344403	0	+	0.306818	(0.28,0.32]	chr1	40091	5	INTRON	INTRON	EXO1	ENSG00000174371.17	ENST00000366548.8:ENST00000423131.5:ENST00000523590.5:ENST00000348581.9:ENST00000518483.5:ENST00000437497.5:ENST00000450748.1:ENST00000493702.5:ENST00000469419.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	88	2	1.53798	3.622685	5.70739	0.0287839	8.32651e-4	0.140044	0.0266389
chr22	21667396	21667492	7482457	0	+	0.59375	(0.57,1]	chr22	763311	9	INTRON	INTRON	ENSG00000207751:PPIL2	ENSG00000207751.3:ENSG00000100023.20	ENST00000498589.1:ENST00000679795.1:ENST00000679540.1:ENST00000679580.1:ENST00000681286.1:ENST00000680061.1:ENST00000681338.1:ENST00000681956.1:ENST00000679827.1:ENST00000679534.1:ENST00000679479.1:ENST00000680393.1:ENST00000680463.1:ENST00000680426.1:ENST00000335025.12:ENST00000498109.2:ENST00000496819.2:ENST00000398831.8:ENST00000681394.1:ENST00000679477.1:ENST00000626352.2:ENST00000417788.5:ENST00000458567.5:ENST00000681791.1:ENST00000679692.1:ENST00000680962.1:ENST00000679857.1:ENST00000679586.1:ENST00000680094.1:ENST00000484439.5:ENST00000680434.1:ENST00000680109.1:ENST00000406385.1:ENST00000680022.1:ENST00000681137.1:ENST00000680860.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA:processed_transcript	5	46	2	1.83525	3.622685	5.41012	0.0110377	1.66635e-5	0.0873897	0.00307972
chr9	5050385	5050485	4096478	0	+	0.49	(0.476,0.515]	chr9	373256	3	SS3_PROX	SS3_PROX:INTRON	JAK2	ENSG00000096968.14	ENST00000636127.1:ENST00000381652.4	protein_coding	protein_coding	protein_coding	protein_coding	3	100	2	3.56952	3.62248	3.67544	5.51624e-4	4.10985e-5	0.0216014	0.00519615
chr1	21139395	21139495	393255	0	-	0.43	(0.408,0.44]	chr1	46836	264	INTRON	INTRON	EIF4G3	ENSG00000075151.24	ENST00000374935.7:ENST00000602326.6:ENST00000685872.1:ENST00000686579.1:ENST00000688741.1:ENST00000400422.6:ENST00000634879.2:ENST00000693470.1:ENST00000685814.1:ENST00000356916.7:ENST00000682284.1:ENST00000438975.5:ENST00000411888.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	49	2	2.00228	3.622475	5.24267	0.0389732	4.83767e-4	0.143072	0.0199261
chr19	29977476	29977576	7047908	0	+	0.28	[0,0.28]	chr19	702669	59	INTRON	INTRON	URI1	ENSG00000105176.18	ENST00000360605.8:ENST00000570564.5:ENST00000574233.5:ENST00000392271.6:ENST00000574110.5:ENST00000574666.5:ENST00000576442.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	46	2	2.20927	3.622475	5.03568	0.0794763	0.00446141	0.19979	0.0610799
chr16	70667035	70667135	6511996	0	-	0.47	(0.44,0.476]	chr16	630830	11	INTRON	INTRON	MTSS2	ENSG00000132613.16	ENST00000338779.11	protein_coding	protein_coding	protein_coding	protein_coding	4	63	2	1.54868	3.62238	5.69608	0.0457575	2.01872e-4	0.164677	0.0129814
chr15	34928023	34928119	6134744	0	-	0.447917	(0.44,0.476]	chr15	584559	5	INTRON	INTRON	AQR	ENSG00000021776.11	ENST00000156471.10:ENST00000543879.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	36	2	2.46135	3.62214	4.78293	0.0374637	0.00292033	0.140008	0.0494641
chr2	135553669	135553769	874175	0	+	0.45	(0.44,0.476]	chr2	97879	217	INTRON	INTRON	R3HDM1	ENSG00000048991.17	ENST00000483021.5:ENST00000463230.5:ENST00000683871.1:ENST00000409478.5:ENST00000264160.8:ENST00000438014.5:ENST00000488035.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	36	2	2.46135	3.62214	4.78293	0.0374637	0.00292033	0.140008	0.0494641
chr3	52687756	52687827	1429201	0	+	0.464789	(0.44,0.476]	chr3	150980	3	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GNL3	ENSG00000163938.17	ENST00000479230.5:ENST00000468146.5:ENST00000394799.6:ENST00000418458.6:ENST00000492349.5:ENST00000462550.5:ENST00000496254.5:ENST00000460073.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	36	2	2.46135	3.62214	4.78293	0.0374637	0.00292033	0.140008	0.0494641
chr6	10975073	10975173	2812667	0	+	0.47	(0.44,0.476]	chr6	264716	2	SS5_PROX	SS5_PROX:INTRON	SYCP2L	ENSG00000153157.13	ENST00000488191.1	protein_coding	processed_transcript	protein_coding	processed_transcript	1	36	2	2.46135	3.62214	4.78293	0.0374637	0.00292033	0.140008	0.0494641
chr19	19433765	19433865	7035628	0	+	0.59	(0.57,1]	chr19	701439	54	INTRON	INTRON	GATAD2A	ENSG00000167491.18	ENST00000494516.6:ENST00000360315.7:ENST00000609040.5:ENST00000417582.6:ENST00000683918.1:ENST00000448576.6:ENST00000432704.5:ENST00000404158.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	33	2	2.9315	3.622135	4.31277	0.00346264	9.1984e-4	0.0539802	0.0278396
chr11	9578384	9578482	4730846	0	+	0.326531	(0.32,0.35]	chr11	438106	6	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	WEE1	ENSG00000166483.12	ENST00000680141.1:ENST00000450114.7:ENST00000299613.10:ENST00000524549.1:ENST00000681684.1:ENST00000524612.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	40	2	2.37794	3.6220800000000004	4.86622	0.0498601	0.00354075	0.156383	0.0546236
chr14	103420856	103420956	5825981	0	+	0.33	(0.32,0.35]	chr14	552808	30	INTRON	INTRON	MARK3	ENSG00000075413.19	ENST00000678179.1:ENST00000676838.1:ENST00000677348.1:ENST00000677404.1:ENST00000676694.1:ENST00000676938.1:ENST00000678619.1:ENST00000676897.1:ENST00000677214.1:ENST00000677942.1:ENST00000676830.1:ENST00000678999.1:ENST00000677228.1:ENST00000556744.2:ENST00000677104.1:ENST00000679330.1:ENST00000560417.6:ENST00000440884.7:ENST00000676475.1:ENST00000677035.1:ENST00000678022.1:ENST00000677560.1:ENST00000561314.6:ENST00000429436.7:ENST00000677118.1:ENST00000676564.1:ENST00000678169.1:ENST00000678175.1:ENST00000678897.1:ENST00000678278.1:ENST00000676645.1:ENST00000677829.1:ENST00000678302.1:ENST00000677133.1:ENST00000561164.2:ENST00000558223.6:ENST00000559328.6:ENST00000678207.1:ENST00000677360.1:ENST00000676905.1:ENST00000678343.1:ENST00000677347.1:ENST00000678071.1:ENST00000677432.1:ENST00000678237.1:ENST00000677604.1:ENST00000676518.1:ENST00000677051.1:ENST00000677857.1:ENST00000677869.1:ENST00000678423.1:ENST00000560603.6:ENST00000416682.6:ENST00000303622.13:ENST00000216288.11:ENST00000679105.1:ENST00000553942.5:ENST00000335102.9:ENST00000561225.1:ENST00000678091.1:ENST00000561071.5:ENST00000558698.5:ENST00000559268.5:ENST00000560731.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	40	2	2.37794	3.6220800000000004	4.86622	0.0498601	0.00354075	0.156383	0.0546236
chr6	156981712	156981812	3009208	0	+	0.27	[0,0.28]	chr6	281124	380	INTRON	INTRON	ARID1B	ENSG00000049618.24	ENST00000346085.10:ENST00000636930.2:ENST00000647938.1:ENST00000350026.10:ENST00000674298.1:ENST00000674190.1:ENST00000414678.7:ENST00000638000.1:ENST00000319584.11:ENST00000452544.2:ENST00000637887.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	50	2	2.86008	3.62192	4.38376	0.0258536	0.0177015	0.133676	0.105304
chr1	28927465	28927565	59085	0	+	0.38	(0.378,0.408]	chr1	7621	123	INTRON	INTRON	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000647918.1:ENST00000646800.1:ENST00000644342.1:ENST00000646189.1:ENST00000482464.6:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000646260.1:ENST00000373798.5:ENST00000644600.1:ENST00000649674.1:ENST00000643173.1:ENST00000343067.9:ENST00000644780.1:ENST00000650265.1:ENST00000648181.1:ENST00000643604.1:ENST00000648891.1:ENST00000373797.2:ENST00000349460.9:ENST00000645184.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	35	2	2.92665	3.6218199999999996	4.31699	0.0250408	0.0086017	0.12011	0.083729
chr12	48837751	48837846	5319688	0	-	0.389474	(0.378,0.408]	chr12	506493	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DDX23	ENSG00000174243.10	ENST00000308025.8:ENST00000550834.1:ENST00000547135.5:ENST00000547165.5:ENST00000553182.5:ENST00000551098.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	35	2	2.92665	3.6218199999999996	4.31699	0.0250408	0.0086017	0.12011	0.083729
chr4	174288771	174288871	2082628	0	+	0.38	(0.378,0.408]	chr4	205805	28	INTRON	INTRON	CEP44	ENSG00000164118.13	ENST00000505124.5:ENST00000457424.6:ENST00000396791.7:ENST00000503780.6:ENST00000514712.5:ENST00000515299.5:ENST00000503053.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	35	2	2.92665	3.6218199999999996	4.31699	0.0250408	0.0086017	0.12011	0.083729
chr1	174527343	174527443	260805	0	+	0.54	(0.515,0.57]	chr1	30824	779	INTRON	INTRON	RABGAP1L	ENSG00000152061.24	ENST00000357444.10:ENST00000251507.8:ENST00000681986.1:ENST00000367690.5:ENST00000526253.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	53	2	2.11384	3.62179	5.12974	0.0118599	4.54392e-4	0.0899583	0.0192381
chr11	9302696	9302796	4909317	0	-	0.35	(0.32,0.35]	chr11	460162	26	INTRON	INTRON	TMEM41B	ENSG00000166471.11	ENST00000524543.5:ENST00000528080.6:ENST00000299596.8:ENST00000611268.4:ENST00000527813.5:ENST00000533723.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	54	2	2.78706	3.6216749999999998	4.45629	0.0246089	0.00253645	0.12011	0.0465056
chr1	184858488	184858587	601887	0	-	0.393939	(0.378,0.408]	chr1	71742	262	INTRON	INTRON	NIBAN1	ENSG00000135842.17	ENST00000367511.4:ENST00000487074.5:ENST00000461167.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	46	2	2.23831	3.6214500000000003	5.00459	0.0179575	0.00371142	0.114265	0.0535094
chr2	131506942	131507041	867097	0	+	0.454545	(0.44,0.476]	chr2	97371	1	INTRON	INTRON	SMPD4BP	ENSG00000152117.18	ENST00000438378.2:ENST00000415574.6	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript:transcribed_processed_pseudogene	4	64	2	1.43625	3.62136	5.80647	0.063142	1.22335e-4	0.197183	0.00993581
chr5	71201256	71201355	2639658	0	-	0.434343	(0.408,0.44]	chr5	250870	31	INTRON	INTRON	GUSBP9	ENSG00000215630.6	ENST00000510138.2	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	3	56	2	2.3494	3.621335	4.89327	0.00462504	0.00458906	0.062717	0.0595107
chr3	46966429	46966529	1679928	0	-	0.58	(0.57,1]	chr3	171436	3	SS3_PROX	SS3_PROX:INTRON	CCDC12	ENSG00000160799.12	ENST00000425441.5:ENST00000683445.1:ENST00000292314.6:ENST00000605358.5:ENST00000488069.5:ENST00000603885.5:ENST00000446836.5:ENST00000494655.5:ENST00000604164.5:ENST00000604181.1:ENST00000605875.1:ENST00000460035.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	65	2	3.22356	3.62128	4.019	3.13356e-5	2.85055e-5	0.00467101	0.00423282
chr11	119302048	119302146	4875845	0	+	0.489796	(0.476,0.515]	chr11	455747	24	UTR3	UTR3:EXON_MRNA:INTRON	CBL	ENSG00000110395.7	ENST00000634586.1:ENST00000264033.6:ENST00000637974.1:ENST00000634301.1	protein_coding	protein_coding	protein_coding	protein_coding	3	55	2	2.20789	3.621275	5.03466	0.00820497	0.00252065	0.081115	0.0446195
chr6	166950506	166950605	3264259	0	-	0.50505	(0.476,0.515]	chr6	303038	15	INTRON	INTRON	ENSG00000249141:RNASET2	ENSG00000249141.1:ENSG00000026297.17	ENST00000507747.1:ENST00000508775.6:ENST00000683770.1:ENST00000611959.2:ENST00000620173.5:ENST00000682774.1:ENST00000684236.1:ENST00000683968.1:ENST00000366855.10:ENST00000421787.5:ENST00000476238.6:ENST00000028008.9:ENST00000478180.6:ENST00000499370.6:ENST00000358165.7:ENST00000496851.6:ENST00000683158.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	68	2	2.4029	3.62126	4.83962	0.00480934	0.0016811	0.0602209	0.0381232
chr9	133253500	133253599	4369805	0	-	0.323232	(0.32,0.35]	chr9	402031	38	EXON_LNCRNA	EXON_LNCRNA:INTRON	ABO	ENSG00000175164.16	ENST00000679909.1:ENST00000453660.4:ENST00000647353.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	55	2	2.18092	3.621155	5.06139	0.0256608	0.00179023	0.120491	0.0392749
chr3	37288378	37288467	1396210	0	+	0.426966	(0.408,0.44]	chr3	146351	4	INTRON	INTRON	GOLGA4	ENSG00000144674.17	ENST00000435830.6:ENST00000444882.5:ENST00000356847.8:ENST00000450863.6:ENST00000361924.7:ENST00000429018.5:ENST00000419177.3:ENST00000437131.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	78	2	3.05705	3.6211200000000003	4.18519	0.00658331	2.59215e-5	0.0701901	0.00400663
chr10	835902	836002	4541615	0	-	0.47	(0.44,0.476]	chr10	419244	1	SS5_PROX	SS5_PROX:INTRON	LARP4B	ENSG00000107929.16	ENST00000688365.1:ENST00000316157.8:ENST00000690516.1:ENST00000689323.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	75	2	1.56617	3.6208799999999997	5.67559	0.0338203	6.34721e-5	0.134476	0.00658818
chr17	42999094	42999185	6613154	0	+	0.362637	(0.35,0.378]	chr17	644679	3	EXON_MRNA	EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPL27	ENSG00000131469.15	ENST00000589037.5:ENST00000253788.12:ENST00000593262.1:ENST00000587478.1:ENST00000588830.1:ENST00000589913.6:ENST00000590864.2:ENST00000586277.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	176	2	3.35764	3.620825	3.88401	5.78349e-5	7.02307e-6	0.00665195	0.00188004
chr2	171131654	171131754	1263807	0	-	0.32	(0.28,0.32]	chr2	133921	134	INTRON	INTRON	TLK1	ENSG00000198586.14	ENST00000431350.7:ENST00000360843.7:ENST00000359766.7:ENST00000521943.5:ENST00000409443.6:ENST00000413010.5:ENST00000470340.1:ENST00000466220.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	93	2	3.4621	3.620685	3.77927	0.00218379	3.56863e-4	0.0417893	0.0169148
chr14	77550195	77550295	5927467	0	-	0.3	(0.28,0.32]	chr14	563683	138	INTRON	INTRON	SPTLC2	ENSG00000100596.8	ENST00000216484.7:ENST00000692906.1:ENST00000687688.1:ENST00000686627.1:ENST00000556607.1:ENST00000554901.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	58	2	2.09794	3.6206750000000003	5.14341	0.0340483	0.00185891	0.134863	0.039946
chr1	212034065	212034162	632376	0	-	0.309278	(0.28,0.32]	chr1	74790	28	INTRON	INTRON	INTS7	ENSG00000143493.13	ENST00000469606.5:ENST00000366994.8:ENST00000366993.7:ENST00000366992.7:ENST00000440600.6:ENST00000619805.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	47	2	3.00395	3.62057	4.23719	0.0264147	0.0101329	0.133676	0.0850389
chr1	231263544	231263640	337247	0	+	0.333333	(0.32,0.35]	chr1	39203	3	INTRON	INTRON	GNPAT	ENSG00000116906.13	ENST00000436239.5:ENST00000366647.9:ENST00000644483.1:ENST00000416000.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	40	2	2.30673	3.6204899999999998	4.93425	0.0584434	0.00281048	0.167723	0.0488779
chr3	107532791	107532890	1469845	0	+	0.323232	(0.32,0.35]	chr3	154137	60	INTRON	INTRON	BBX	ENSG00000114439.19	ENST00000415149.6:ENST00000402543.5:ENST00000325805.13:ENST00000485939.5:ENST00000427402.5:ENST00000416476.6:ENST00000454540.5:ENST00000449335.5:ENST00000431630.5:ENST00000458458.5:ENST00000456817.5:ENST00000456419.5:ENST00000402163.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	40	2	2.30673	3.6204899999999998	4.93425	0.0584434	0.00281048	0.167723	0.0488779
chr2	222935679	222935777	1021988	0	+	0.265306	[0,0.28]	chr2	109357	6	INTRON	INTRON	ACSL3	ENSG00000123983.15	ENST00000392066.7:ENST00000407441.5:ENST00000680251.1:ENST00000679541.1:ENST00000681906.1:ENST00000679545.1:ENST00000679932.1:ENST00000680100.1:ENST00000680475.1:ENST00000680525.1:ENST00000680420.1:ENST00000681326.1:ENST00000681292.1:ENST00000680395.1:ENST00000680736.1:ENST00000680147.1:ENST00000357430.8:ENST00000681009.1:ENST00000679514.1:ENST00000681697.1:ENST00000680921.1:ENST00000681383.1:ENST00000679558.1:ENST00000680684.1:ENST00000680424.1:ENST00000495541.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	43	2	2.8569	3.6203849999999997	4.38387	0.0501911	0.013822	0.156383	0.10247
chr18	26295714	26295814	6885190	0	+	0.34	(0.32,0.35]	chr18	682483	4	SS5_PROX	SS5_PROX:INTRON	TAF4B	ENSG00000141384.13	ENST00000269142.10:ENST00000578121.5:ENST00000418698.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	40	2	2.4458	3.62031	4.79482	0.0425977	0.00447781	0.148082	0.0610799
chr6	142170621	142170721	2974564	0	+	0.44	(0.408,0.44]	chr6	279087	2	SS5_PROX	SS5_PROX:INTRON	VTA1	ENSG00000009844.16	ENST00000452973.6:ENST00000620996.4:ENST00000367621.1:ENST00000367630.9:ENST00000491881.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	49	2	1.94273	3.62026	5.29779	0.0456237	3.80479e-4	0.149888	0.0176313
chr16	58578398	58578498	6495853	0	-	0.33	(0.32,0.35]	chr16	628577	3	SS5_PROX	SS5_PROX:INTRON	CNOT1	ENSG00000125107.19	ENST00000317147.10:ENST00000569240.5:ENST00000567188.5:ENST00000441024.6:ENST00000565605.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	38	2	2.96746	3.62023	4.273	0.0368357	0.00815799	0.138959	0.0810802
chr9	112230116	112230211	4316915	0	-	0.347368	(0.32,0.35]	chr9	397022	13	INTRON	INTRON	PTBP3	ENSG00000119314.16	ENST00000334318.10:ENST00000458258.5:ENST00000374257.6:ENST00000374255.6:ENST00000343327.6	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	2.96746	3.62023	4.273	0.0368357	0.00815799	0.138959	0.0810802
chr1	43663587	43663681	85619	0	+	0.468085	(0.44,0.476]	chr1	11535	1	INTRON	INTRON	KDM4A	ENSG00000066135.13	ENST00000372396.4:ENST00000463151.5:ENST00000485249.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	36	2	2.38219	3.6201800000000004	4.85817	0.045456	0.00223254	0.149888	0.0435144
chr12	121909450	121909549	5238391	0	+	0.444444	(0.44,0.476]	chr12	497289	60	INTRON	INTRON	PSMD9	ENSG00000110801.14	ENST00000537407.5:ENST00000540962.5:ENST00000261817.6:ENST00000542602.1:ENST00000541212.6:ENST00000543699.5:ENST00000535293.5:ENST00000544724.5:ENST00000544254.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	36	2	2.38219	3.6201800000000004	4.85817	0.045456	0.00223254	0.149888	0.0435144
chr2	128109333	128109433	862656	0	+	0.45	(0.44,0.476]	chr2	96681	3	SS3_PROX	SS3_PROX:INTRON	UGGT1	ENSG00000136731.13	ENST00000259253.11:ENST00000438277.5:ENST00000376723.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	36	2	2.38219	3.6201800000000004	4.85817	0.045456	0.00223254	0.149888	0.0435144
chr9	70330643	70330743	4139903	0	+	0.47	(0.44,0.476]	chr9	377318	61	INTRON	INTRON	SMC5	ENSG00000198887.9	ENST00000361138.7:ENST00000475540.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	36	2	2.38219	3.6201800000000004	4.85817	0.045456	0.00223254	0.149888	0.0435144
chr9	131174418	131174518	4216131	0	+	0.42	(0.408,0.44]	chr9	386618	1	SS5_PROX	SS5_PROX:INTRON	NUP214	ENSG00000126883.19	ENST00000695497.1:ENST00000695498.1:ENST00000695496.1:ENST00000695495.1:ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000525980.5:ENST00000526346.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	59	2	1.78881	3.62017	5.45153	0.0370259	1.89064e-4	0.139194	0.0119565
chr3	185796368	185796468	1886062	0	-	0.5	(0.476,0.515]	chr3	188573	977	INTRON	INTRON	IGF2BP2	ENSG00000073792.16	ENST00000382199.7:ENST00000346192.7:ENST00000457616.6:ENST00000421047.3:ENST00000461957.5:ENST00000493302.5:ENST00000466476.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	74	2	3.49587	3.6201	3.74433	0.00120011	2.85053e-4	0.0315806	0.0150568
chr15	67253528	67253628	6211411	0	-	0.46	(0.44,0.476]	chr15	592824	108	INTRON	INTRON	AAGAB	ENSG00000103591.13	ENST00000261880.10:ENST00000561452.5:ENST00000542650.5:ENST00000558725.5:ENST00000561229.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	36	2	2.5364	3.619975	4.70355	0.0309324	0.00383786	0.13151	0.0562562
chr17	62058283	62058383	6810811	0	-	0.49	(0.476,0.515]	chr17	672952	52	INTRON	INTRON	MED13	ENSG00000108510.10	ENST00000397786.7	protein_coding	protein_coding	protein_coding	protein_coding	4	63	2	2.03337	3.61991	5.20645	0.00851546	0.00136049	0.0833995	0.0336321
chr9	124737645	124737745	4348879	0	-	0.46	(0.44,0.476]	chr9	399261	39	INTRON	INTRON	NR6A1	ENSG00000148200.17	ENST00000487099.7:ENST00000373584.7:ENST00000416460.6:ENST00000344523.8	protein_coding	protein_coding	protein_coding	protein_coding	2	49	2	2.24189	3.6198550000000003	4.99782	0.0193405	0.0013223	0.108861	0.0333932
chr6	150997363	150997463	2999199	0	+	0.42	(0.408,0.44]	chr6	280599	118	INTRON	INTRON	MTHFD1L	ENSG00000120254.16	ENST00000611279.4:ENST00000367321.8:ENST00000618312.4:ENST00000478643.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	75	2	3.37162	3.61985	3.86808	0.00208674	1.49394e-4	0.0411801	0.0106137
chr1	171506170	171506269	253421	0	+	0.373737	(0.35,0.378]	chr1	30096	201	INTRON	INTRON	PRRC2C	ENSG00000117523.18	ENST00000647382.2:ENST00000367742.7:ENST00000476522.5:ENST00000338920.8:ENST00000467601.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	248	2	3.42564	3.619765	3.81389	2.44966e-5	8.11272e-7	0.00406237	5.08792e-4
chr9	130765354	130765454	4214378	0	+	0.41	(0.408,0.44]	chr9	386427	505	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000393293.4	protein_coding	protein_coding	protein_coding	protein_coding	2	75	2	3.56057	3.619715	3.67886	9.67143e-4	3.86173e-4	0.0282401	0.017761
chr17	5425275	5425372	6551778	0	+	0.42268	(0.408,0.44]	chr17	636009	21	INTRON	INTRON	RPAIN	ENSG00000129197.15	ENST00000573577.5:ENST00000571558.5:ENST00000575599.5:ENST00000571043.5:ENST00000571613.5:ENST00000539417.6:ENST00000381208.9:ENST00000536255.6:ENST00000327154.10:ENST00000381209.8:ENST00000575112.5:ENST00000570883.5:ENST00000573126.1:ENST00000405578.8:ENST00000574003.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	121	2	2.74759	3.6196900000000003	4.49179	0.00102152	3.94825e-6	0.029231300000000002	0.00131614
chr19	1809542	1809642	7113432	0	-	0.63	(0.57,1]	chr19	714791	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ATP8B3	ENSG00000130270.16	ENST00000310127.10:ENST00000531925.5:ENST00000525591.5:ENST00000526092.6:ENST00000533993.5:ENST00000587160.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	65	2	2.98903	3.6196349999999997	4.25024	1.36729e-4	6.01239e-6	0.0106727	0.0017156
chr1	30891797	30891897	411347	0	-	0.51	(0.476,0.515]	chr1	49595	105	INTRON	INTRON	SDC3	ENSG00000162512.16	ENST00000339394.7	protein_coding	protein_coding	protein_coding	protein_coding	3	58	2	1.79187	3.6192	5.44653	0.0362169	2.03754e-4	0.138959	0.0124395
chr21	37446555	37446654	7407027	0	+	0.353535	(0.35,0.378]	chr21	754891	158	INTRON	INTRON	DYRK1A	ENSG00000157540.22	ENST00000646523.1:ENST00000647425.1:ENST00000647188.2:ENST00000647504.1:ENST00000644942.1:ENST00000338785.8:ENST00000643624.1:ENST00000643551.1:ENST00000426672.6:ENST00000398960.7:ENST00000646548.1:ENST00000645424.1:ENST00000643854.1:ENST00000455097.6:ENST00000642309.1:ENST00000645774.1:ENST00000398956.2	protein_coding	protein_coding	protein_coding	protein_coding	4	66	2	1.97697	3.61911	5.26125	0.0109711	0.00191117	0.092635	0.03947
chr15	58896518	58896614	6193747	0	-	0.322917	(0.32,0.35]	chr15	590067	16	INTRON	INTRON	SLTM	ENSG00000137776.17	ENST00000380516.7:ENST00000432750.5:ENST00000492526.5:ENST00000557924.5:ENST00000497088.5:ENST00000558756.5:ENST00000249736.11:ENST00000473359.1:ENST00000559305.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	60	2	2.10695	3.61909	5.13123	0.0127483	0.00394704	0.0987441	0.0548259
chr16	14981493	14981593	6305200	0	+	0.33	(0.32,0.35]	chr16	603267	42	INTRON	INTRON	PDXDC1	ENSG00000179889.20	ENST00000563679.5:ENST00000563667.5:ENST00000563522.5:ENST00000535621.6:ENST00000396410.9:ENST00000566426.1:ENST00000455313.6:ENST00000562119.5:ENST00000570001.5:ENST00000569715.5:ENST00000627450.2:ENST00000565362.5:ENST00000567306.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	50	2	2.4053	3.619085	4.83287	0.0108284	0.0095071	0.0920575	0.0817766
chr1	174967503	174967591	265237	0	+	0.465909	(0.44,0.476]	chr1	30934	3	EXON_LNCRNA	EXON_LNCRNA:INTRON	RABGAP1L:ENSG00000289425	ENSG00000152061.24:ENSG00000289425.1	ENST00000681986.1:ENST00000325589.9:ENST00000469553.6:ENST00000367687.5:ENST00000347255.6:ENST00000489615.5:ENST00000465412.5:ENST00000392064.6:ENST00000367688.3:ENST00000485114.1:ENST00000686005.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:nonsense_mediated_decay:lncRNA	1	37	2	2.80275	3.6189999999999998	4.43525	0.0146513	0.00897296	0.0982604	0.0849778
chr1	179971401	179971501	267603	0	+	0.46	(0.44,0.476]	chr1	31299	20	INTRON	INTRON	CEP350	ENSG00000135837.16	ENST00000491495.2:ENST00000367607.8	protein_coding	protein_coding	protein_coding	protein_coding	1	37	2	2.80275	3.6189999999999998	4.43525	0.0146513	0.00897296	0.0982604	0.0849778
chr7	8306251	8306351	3280705	0	+	0.45	(0.44,0.476]	chr7	304832	17	INTRON	INTRON	ENSG00000229970:ENSG00000272328	ENSG00000229970.3:ENSG00000272328.1	ENST00000424460.1:ENST00000435967.1:ENST00000606016.1	lncRNA	lncRNA	lncRNA	lncRNA	1	37	2	2.80275	3.6189999999999998	4.43525	0.0146513	0.00897296	0.0982604	0.0849778
chr11	108098929	108099029	4856654	0	+	0.24	[0,0.28]	chr11	452968	4	SS5_PROX	SS5_PROX:INTRON	CUL5	ENSG00000166266.14	ENST00000393094.7:ENST00000531427.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	42	2	2.69187	3.6189850000000003	4.5461	0.0365918	0.0221271	0.138959	0.123903
chr16	18160261	18160361	6454237	0	-	0.25	[0,0.28]	chr16	621964	88	INTRON	INTRON	ENSG00000260242	ENSG00000260242.1	ENST00000563866.1	lncRNA	lncRNA	lncRNA	lncRNA	1	42	2	2.69187	3.6189850000000003	4.5461	0.0365918	0.0221271	0.138959	0.123903
chr8	111030929	111031029	4027510	0	-	0.28	[0,0.28]	chr8	367865	31	INTRON	INTRON	LINC01608	ENSG00000253877.6	ENST00000669893.1:ENST00000669744.1	lncRNA	lncRNA	lncRNA	lncRNA	1	42	2	2.69187	3.6189850000000003	4.5461	0.0365918	0.0221271	0.138959	0.123903
chrX	48928625	48928724	7815779	0	-	0.444444	(0.44,0.476]	chrX	796844	22	INTRON	INTRON	OTUD5	ENSG00000068308.15	ENST00000376488.8:ENST00000396743.7:ENST00000455452.5:ENST00000156084.8:ENST00000428668.2:ENST00000484499.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	45	2	2.27304	3.618975	4.96491	0.0158915	0.0034249	0.109464	0.0517761
chr5	6729912	6730012	2316000	0	+	0.44	(0.408,0.44]	chr5	224267	144	INTRON	INTRON	TENT4A	ENSG00000112941.14	ENST00000230859.8:ENST00000515721.1:ENST00000631941.2	protein_coding	protein_coding	protein_coding	protein_coding	4	62	2	1.79818	3.6187899999999997	5.4394	0.020428	6.50925e-4	0.122109	0.0232863
chrX	41090504	41090604	7644112	0	+	0.33	(0.32,0.35]	chrX	782230	40	INTRON	INTRON	USP9X	ENSG00000124486.14	ENST00000324545.9:ENST00000378308.7	protein_coding	protein_coding	protein_coding	protein_coding	3	60	2	1.72898	3.618755	5.50853	0.0425433	0.0010959399999999999	0.161951	0.0304174
chr3	37105154	37105254	1655908	0	-	0.32	(0.28,0.32]	chr3	169941	3	SS5_PROX	SS5_PROX:INTRON	LRRFIP2	ENSG00000093167.18	ENST00000336686.9:ENST00000354379.8:ENST00000421276.6:ENST00000396428.6:ENST00000440230.5:ENST00000416425.5:ENST00000481682.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	93	2	3.52126	3.61871	3.71616	0.00175369	4.76221e-4	0.0376491	0.0197443
chr16	23687136	23687219	6323715	0	+	0.53012	(0.515,0.57]	chr16	605661	1	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	PLK1	ENSG00000166851.15	ENST00000562272.5:ENST00000300093.9:ENST00000562407.1:ENST00000564947.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	41	2	2.26012	3.61867	4.97722	0.0160033	0.00168681	0.109464	0.0370386
chr1	154962767	154962861	559715	0	-	0.308511	(0.28,0.32]	chr1	66602	6	UTR3	UTR3:EXON_MRNA:INTRON	PYGO2:SHC1	ENSG00000163348.4:ENSG00000160691.19	ENST00000483463.1:ENST00000368450.5:ENST00000368453.8:ENST00000368449.8:ENST00000448116.7:ENST00000368445.9	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	73	2	1.93579	3.6186599999999998	5.30153	0.0139701	0.00332518	0.10247	0.0512081
chr7	128991698	128991798	3635941	0	-	0.32	(0.28,0.32]	chr7	338089	3	SS5_PROX	SS5_PROX:INTRON	TNPO3	ENSG00000064419.14	ENST00000627585.2:ENST00000265388.10:ENST00000471234.5:ENST00000482320.5:ENST00000471166.1	protein_coding	protein_coding	protein_coding	protein_coding	4	73	2	1.93579	3.6186599999999998	5.30153	0.0139701	0.00332518	0.10247	0.0512081
chr6	134981185	134981282	3224713	0	-	0.257732	[0,0.28]	chr6	299784	14	INTRON	INTRON	HBS1L	ENSG00000112339.15	ENST00000367837.10:ENST00000527578.5:ENST00000527005.5:ENST00000415177.6:ENST00000367826.6:ENST00000533274.5:ENST00000526100.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	42	2	2.29142	3.6185150000000004	4.94561	0.0592143	0.0150263	0.189982	0.0994339
chr1	235242739	235242838	663003	0	-	0.323232	(0.32,0.35]	chr1	78522	19	INTRON	INTRON	ARID4B	ENSG00000054267.22	ENST00000349213.7:ENST00000366603.6:ENST00000264183.9:ENST00000421364.5:ENST00000491632.5:ENST00000418304.1:ENST00000466653.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	37	2	2.78073	3.61851	4.45629	0.0246089	0.01481	0.12011	0.106702
chr17	32831028	32831128	6756654	0	-	0.35	(0.32,0.35]	chr17	664075	8	INTRON	INTRON	MYO1D	ENSG00000176658.17	ENST00000318217.10:ENST00000394649.8:ENST00000579584.5:ENST00000583621.1	protein_coding	protein_coding	protein_coding	protein_coding	1	37	2	2.78073	3.61851	4.45629	0.0246089	0.01481	0.12011	0.106702
chr17	37311857	37311957	6762094	0	-	0.35	(0.32,0.35]	chr17	664944	122	INTRON	INTRON	ACACA	ENSG00000278540.5	ENST00000616317.5:ENST00000614428.4:ENST00000613146.4:ENST00000615229.4:ENST00000621960.1:ENST00000617548.1:ENST00000616352.4:ENST00000614789.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	37	2	2.78073	3.61851	4.45629	0.0246089	0.01481	0.12011	0.106702
chr7	105130024	105130123	3601292	0	-	0.323232	(0.32,0.35]	chr7	336070	26	INTRON	INTRON	SRPK2	ENSG00000135250.17	ENST00000465072.5:ENST00000393651.8:ENST00000357311.7:ENST00000466917.1:ENST00000485455.1:ENST00000477925.5:ENST00000489828.5:ENST00000474770.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	37	2	2.78073	3.61851	4.45629	0.0246089	0.01481	0.12011	0.106702
chr8	67067404	67067502	3776648	0	+	0.336735	(0.32,0.35]	chr8	350226	25	INTRON	INTRON	CSPP1	ENSG00000104218.16	ENST00000676113.1:ENST00000675306.2:ENST00000678156.1:ENST00000262210.11:ENST00000678017.1:ENST00000675869.1:ENST00000521919.6:ENST00000678542.1:ENST00000677619.1:ENST00000676605.1:ENST00000676471.1:ENST00000677256.1:ENST00000676847.1:ENST00000677009.1:ENST00000675820.1:ENST00000676317.1:ENST00000677592.1:ENST00000676573.1:ENST00000678318.1:ENST00000677473.1:ENST00000674993.1:ENST00000678553.1:ENST00000678927.1:ENST00000678204.1:ENST00000679226.1:ENST00000676882.1:ENST00000675955.1:ENST00000678728.1:ENST00000677430.1:ENST00000677455.1:ENST00000677071.1:ENST00000678616.1:ENST00000678362.1:ENST00000679112.1:ENST00000678645.1:ENST00000676567.1:ENST00000677845.1:ENST00000519701.5:ENST00000519163.6:ENST00000676858.1:ENST00000678747.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	37	2	2.78073	3.61851	4.45629	0.0246089	0.01481	0.12011	0.106702
chr12	69271195	69271294	5163834	0	+	0.242424	[0,0.28]	chr12	489054	18	UTR3	UTR3:EXON_MRNA	CPSF6	ENSG00000111605.18	ENST00000435070.7:ENST00000650046.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	173	2	2.73547	3.61829	4.50111	0.00218343	1.3585e-5	0.0417893	0.00275435
chr14	102635610	102635710	5822963	0	+	0.3	(0.28,0.32]	chr14	552490	419	INTRON	INTRON	RCOR1	ENSG00000089902.10	ENST00000262241.7	protein_coding	protein_coding	protein_coding	protein_coding	5	80	2	1.56481	3.6181900000000002	5.67157	0.0339805	9.48957e-4	0.146815	0.0281755
chr14	81263526	81263626	5935946	0	-	0.26	[0,0.28]	chr14	564180	17	UTR3	UTR3:EXON_MRNA:INTRON	STON2	ENSG00000140022.14	ENST00000553821.3:ENST00000614646.5:ENST00000555447.5:ENST00000649389.1	protein_coding	protein_coding	protein_coding	protein_coding	3	77	2	1.79667	3.618175	5.43968	0.0445299	0.00113119	0.149888	0.0308465
chr6	37844003	37844103	2857275	0	+	0.48	(0.476,0.515]	chr6	270225	236	INTRON	INTRON	ZFAND3	ENSG00000156639.12	ENST00000287218.9:ENST00000373391.6:ENST00000474522.5	protein_coding	protein_coding	protein_coding	protein_coding	2	74	2	3.41728	3.6181099999999997	3.81894	0.00165726	1.96038e-4	0.0369207	0.0122528
chr1	179971301	179971401	267602	0	+	0.51	(0.476,0.515]	chr1	31299	19	INTRON	INTRON	CEP350	ENSG00000135837.16	ENST00000491495.2:ENST00000367607.8	protein_coding	protein_coding	protein_coding	protein_coding	2	74	2	3.5704	3.618025	3.66565	8.75056e-4	4.18031e-4	0.0270926	0.0182827
chr6	126010032	126010130	2956303	0	+	0.326531	(0.32,0.35]	chr6	278028	2	INTRON	INTRON	TRMT11	ENSG00000066651.20	ENST00000479748.5:ENST00000368332.7:ENST00000648977.1:ENST00000468097.5:ENST00000334379.11:ENST00000466316.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	37	2	2.40308	3.617975	4.83287	0.0417732	0.0095071	0.161736	0.0817766
chr3	6535624	6535724	1356597	0	+	0.39	(0.378,0.408]	chr3	142508	225	INTRON	INTRON	ENSG00000189229	ENSG00000189229.12	ENST00000660158.1:ENST00000433639.1:ENST00000655754.1:ENST00000653839.1:ENST00000662846.1:ENST00000659876.1:ENST00000414438.2:ENST00000658468.1:ENST00000414603.1:ENST00000669512.1:ENST00000667028.1:ENST00000655541.1:ENST00000668643.1:ENST00000671568.1:ENST00000671036.1:ENST00000669798.1:ENST00000655753.1:ENST00000655856.1:ENST00000658398.1:ENST00000661518.1:ENST00000661279.1:ENST00000655495.1:ENST00000663041.1:ENST00000659827.1:ENST00000667716.1:ENST00000662508.1:ENST00000668416.1:ENST00000658133.1:ENST00000659651.1:ENST00000342990.4:ENST00000660054.1:ENST00000671370.1	lncRNA	lncRNA	lncRNA	lncRNA	5	167	2	3.3402	3.617695	3.89519	5.46679e-5	5.63962e-6	0.00651589	0.0016514
chr2	215323690	215323789	1014030	0	+	0.30303	(0.28,0.32]	chr2	107833	36	INTRON	INTRON	ATIC	ENSG00000138363.15	ENST00000444305.5:ENST00000488712.5:ENST00000236959.14:ENST00000443953.5:ENST00000435675.5:ENST00000427397.5:ENST00000413174.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	52	2	2.1895	3.617645	5.04579	0.0227063	0.00714672	0.124921	0.0723634
chr3	45727620	45727720	1417435	0	+	0.52	(0.515,0.57]	chr3	148713	37	INTRON	INTRON	SACM1L	ENSG00000211456.13	ENST00000455997.5:ENST00000418611.5:ENST00000672477.1:ENST00000441228.5:ENST00000389061.10:ENST00000672858.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	44	2	1.8707	3.61755	5.3644	0.0523213	1.52226e-4	0.160182	0.0106137
chr14	58269028	58269126	5731155	0	+	0.469388	(0.44,0.476]	chr14	544117	10	INTRON	INTRON	PSMA3	ENSG00000100567.13	ENST00000216455.9:ENST00000557087.5:ENST00000412908.6:ENST00000557508.5:ENST00000553677.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	46	2	2.54944	3.61754	4.68564	0.00816201	0.00591346	0.0766625	0.0694038
chr7	102866411	102866511	3590283	0	-	0.45	(0.44,0.476]	chr7	335159	112	INTRON	INTRON	FBXL13	ENSG00000161040.18	ENST00000694871.1:ENST00000694870.1:ENST00000448002.6:ENST00000379305.7:ENST00000440067.3:ENST00000456695.6:ENST00000313221.8:ENST00000436908.5:ENST00000455112.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	46	2	2.54944	3.61754	4.68564	0.00816201	0.00591346	0.0766625	0.0694038
chr2	203430947	203431047	990624	0	+	0.37	(0.35,0.378]	chr2	106387	37	UTR3	UTR3:EXON_MRNA:INTRON	ABI2	ENSG00000138443.17	ENST00000261017.9:ENST00000295851.10:ENST00000261018.12:ENST00000261016.11:ENST00000464761.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	49	2	2.59046	3.617515	4.64457	0.012652	0.00528327	0.0926667	0.0656295
chr1	10564570	10564670	23878	0	+	0.39	(0.378,0.408]	chr1	2518	279	INTRON	INTRON	PEX14	ENSG00000142655.13	ENST00000356607.9:ENST00000491661.2	protein_coding	protein_coding	protein_coding	protein_coding	1	37	2	2.38873	3.6174999999999997	4.84627	0.0458857	0.00254319	0.149888	0.0465056
chr18	68712960	68713056	6985346	0	-	0.385417	(0.378,0.408]	chr18	691316	12	INTRON	INTRON	TMX3	ENSG00000166479.10	ENST00000299608.7:ENST00000564631.5:ENST00000569053.5:ENST00000443099.6:ENST00000562706.5:ENST00000565918.5:ENST00000564008.5:ENST00000569982.3:ENST00000544714.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	37	2	2.46373	3.61739	4.77105	0.0382831	0.00330823	0.141795	0.0527031
chr15	22518788	22518888	5974756	0	+	0.28	[0,0.28]	chr15	568084	14	INTRON	INTRON	HERC2P2	ENSG00000276550.5	ENST00000613386.4:ENST00000619021.4	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	2	57	2	2.28885	3.61723	4.94561	0.0181093	0.0150263	0.114853	0.0994339
chr9	5018467	5018566	4096155	0	+	0.474747	(0.44,0.476]	chr9	373235	321	INTRON	INTRON	JAK2	ENSG00000096968.14	ENST00000636127.1:ENST00000476574.5:ENST00000381652.4	protein_coding	protein_coding	protein_coding	protein_coding	3	99	2	3.45381	3.617135	3.78046	3.54249e-4	7.90762e-5	0.0174886	0.00739361
chr7	156865076	156865176	3687737	0	-	0.48	(0.476,0.515]	chr7	342096	278	INTRON	INTRON	LMBR1	ENSG00000105983.23	ENST00000353442.10:ENST00000415428.5:ENST00000454132.5:ENST00000434503.5:ENST00000430278.5:ENST00000434278.5:ENST00000444719.5:ENST00000461469.5:ENST00000414218.1:ENST00000434453.1:ENST00000498034.5:ENST00000433968.5:ENST00000485985.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	87	2	1.23014	3.617075	6.00401	0.062699	1.13973e-5	0.175964	0.00249332
chrX	103216516	103216607	7697309	0	+	0.340659	(0.32,0.35]	chrX	787710	1	UTR3	UTR3:EXON_MRNA	BEX4	ENSG00000102409.10	ENST00000372695.6:ENST00000372691.3	protein_coding	protein_coding	protein_coding	protein_coding	5	189	2	3.40501	3.61706	3.82911	5.66233e-5	1.20951e-5	0.00655354	0.00258123
chr15	43152540	43152636	6010644	0	+	0.520833	(0.515,0.57]	chr15	572296	2	INTRON	INTRON	TMEM62	ENSG00000137842.7	ENST00000260403.7:ENST00000564494.1	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	2.83501	3.617005	4.399	0.0117686	0.00708863	0.0894475	0.0754923
chr19	53077512	53077612	7210303	0	-	0.57	(0.515,0.57]	chr19	731875	1	SS3_PROX	SS3_PROX:INTRON	ZNF160	ENSG00000170949.18	ENST00000599056.5:ENST00000418871.5:ENST00000429604.5:ENST00000683776.1:ENST00000599247.5:ENST00000601982.5:ENST00000355147.9:ENST00000599729.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	33	2	2.83501	3.617005	4.399	0.0117686	0.00708863	0.0894475	0.0754923
chr6	4910936	4911035	2792210	0	+	0.525253	(0.515,0.57]	chr6	263614	182	INTRON	INTRON	CDYL	ENSG00000153046.18	ENST00000328908.9:ENST00000440139.5:ENST00000397588.8:ENST00000472453.5:ENST00000449732.6:ENST00000343762.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	33	2	2.83501	3.617005	4.399	0.0117686	0.00708863	0.0894475	0.0754923
chr6	17703082	17703182	3066176	0	-	0.56	(0.515,0.57]	chr6	284872	141	INTRON	INTRON	NUP153	ENSG00000124789.12	ENST00000613258.4:ENST00000537253.5:ENST00000262077.3	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	2.83501	3.617005	4.399	0.0117686	0.00708863	0.0894475	0.0754923
chr1	110373597	110373696	182688	0	+	0.212121	[0,0.28]	chr1	20259	7	INTRON	INTRON	LAMTOR5-AS1	ENSG00000224699.10	ENST00000626572.2	lncRNA	lncRNA	lncRNA	lncRNA	3	68	2	1.79953	3.616905	5.43428	0.0377477	0.00400834	0.156608	0.0551303
chr17	66313718	66313818	6662408	0	+	0.26	[0,0.28]	chr17	650320	72	INTRON	INTRON	PRKCA	ENSG00000154229.12	ENST00000413366.8:ENST00000578063.5:ENST00000583361.1:ENST00000284384.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	68	2	1.79953	3.616905	5.43428	0.0377477	0.00400834	0.156608	0.0551303
chr22	21429418	21429518	7481293	0	+	0.27	[0,0.28]	chr22	763209	83	INTRON	INTRON	HIC2	ENSG00000169635.10	ENST00000407464.7:ENST00000407598.2	protein_coding	protein_coding	protein_coding	protein_coding	3	142	2	3.27263	3.6168750000000003	3.96112	4.33342e-4	4.10633e-4	0.0190829	0.0181365
chr4	143356830	143356930	2054273	0	+	0.31	(0.28,0.32]	chr4	203721	129	INTRON	INTRON	GAB1	ENSG00000109458.9	ENST00000262995.8:ENST00000262994.9:ENST00000514639.5	protein_coding	protein_coding	protein_coding	protein_coding	3	63	2	2.02902	3.61681	5.2046	0.0174423	0.00448664	0.11269	0.0593175
chr3	25752555	25752654	1642530	0	-	0.444444	(0.44,0.476]	chr3	168666	9	INTRON	INTRON	NGLY1	ENSG00000151092.18	ENST00000280700.10:ENST00000428257.5:ENST00000675217.1:ENST00000676225.1:ENST00000493324.5:ENST00000396649.7:ENST00000308710.9:ENST00000280699.13:ENST00000674841.1:ENST00000675234.1:ENST00000463611.2:ENST00000417874.6:ENST00000427041.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	54	2	1.98146	3.616625	5.25179	0.0186013	0.00124521	0.117264	0.0322969
chr7	1027027	1027127	3460726	0	-	0.39	(0.378,0.408]	chr7	323572	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	C7orf50	ENSG00000146540.15	ENST00000357429.10:ENST00000397100.6:ENST00000397098.8:ENST00000412051.5:ENST00000488073.1:ENST00000444428.5:ENST00000491163.1:ENST00000465681.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	56	2	2.22859	3.6165900000000004	5.00459	0.00763308	0.00371142	0.0777238	0.0535094
chrX	48947681	48947781	7815974	0	-	0.38	(0.378,0.408]	chrX	796867	30	INTRON	INTRON	OTUD5	ENSG00000068308.15	ENST00000376488.8:ENST00000396743.7:ENST00000455452.5:ENST00000156084.8:ENST00000428668.2:ENST00000484499.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	56	2	2.22859	3.6165900000000004	5.00459	0.00763308	0.00371142	0.0777238	0.0535094
chr11	33130812	33130912	4940666	0	-	0.38	(0.378,0.408]	chr11	462854	220	INTRON	INTRON	CSTF3	ENSG00000176102.13	ENST00000323959.9:ENST00000524827.6	protein_coding	protein_coding	protein_coding	protein_coding	2	77	2	3.50907	3.61652	3.72397	0.00127828	3.23378e-4	0.0326395	0.0159645
chr1	92357883	92357982	161970	0	+	0.393939	(0.378,0.408]	chr1	17497	116	INTRON	INTRON	RPAP2	ENSG00000122484.9	ENST00000610020.2:ENST00000477322.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	46	2	2.35527	3.616445	4.87762	0.0121511	0.00553849	0.0963966	0.0648867
chr19	3103365	3103464	6998624	0	+	0.484848	(0.476,0.515]	chr19	694038	82	INTRON	INTRON	GNA11	ENSG00000088256.9	ENST00000078429.9:ENST00000586763.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	45	2	2.26034	3.616435	4.97253	0.0166235	0.00311573	0.110511	0.0498063
chr6	147747651	147747751	2991475	0	+	0.42	(0.408,0.44]	chr6	280177	102	INTRON	INTRON	ENSG00000227681	ENSG00000227681.5	ENST00000427015.1	lncRNA	lncRNA	lncRNA	lncRNA	2	45	2	2.27464	3.6164050000000003	4.95817	0.0158016	0.00372419	0.109464	0.0535094
chr5	133077497	133077597	2488264	0	+	0.42	(0.408,0.44]	chr5	237508	2	INTRON	INTRON	HSPA4	ENSG00000170606.16	ENST00000304858.7:ENST00000504328.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	45	2	2.21238	3.6163299999999996	5.02028	0.0193525	0.00303216	0.119831	0.0493883
chr11	57773216	57773316	4793245	0	+	0.42	(0.408,0.44]	chr11	443717	87	INTRON	INTRON	ENSG00000288534:CTNND1	ENSG00000288534.1:ENSG00000198561.16	ENST00000673781.1:ENST00000673810.1:ENST00000674116.1:ENST00000674060.1:ENST00000524630.5:ENST00000529919.5:ENST00000533189.1:ENST00000682741.1:ENST00000358694.10:ENST00000361332.8:ENST00000361391.10:ENST00000361796.9:ENST00000415361.6:ENST00000426142.6:ENST00000428599.6:ENST00000525902.5:ENST00000526357.5:ENST00000526772.5:ENST00000527467.5:ENST00000528232.5:ENST00000528621.5:ENST00000529526.5:ENST00000529873.5:ENST00000529986.5:ENST00000530094.5:ENST00000530748.5:ENST00000531014.5:ENST00000532245.5:ENST00000532463.5:ENST00000532649.5:ENST00000532787.5:ENST00000532844.5:ENST00000533667.5:ENST00000534579.5:ENST00000399050.10:ENST00000526938.5:ENST00000531007.2:ENST00000674015.1:ENST00000673826.1:ENST00000673683.1:ENST00000674106.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	178	2	2.43897	3.6161950000000003	4.79342	2.62881e-4	1.51353e-6	0.0143546	8.05662e-4
chr10	110884962	110885059	4521235	0	+	0.463918	(0.44,0.476]	chr10	417144	3	EXON_LNCRNA	EXON_LNCRNA:SS3_PROX:INTRON	PDCD4	ENSG00000150593.18	ENST00000393104.6:ENST00000467574.5:ENST00000483670.5:ENST00000280154.12:ENST00000444997.1:ENST00000492932.5:ENST00000481353.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	45	2	2.14573	3.61616	5.08659	0.0238593	0.00226401	0.129075	0.0425438
chr16	25141341	25141440	6330538	0	+	0.474747	(0.44,0.476]	chr16	606097	7	INTRON	INTRON	LCMT1	ENSG00000205629.12	ENST00000380962.9:ENST00000564011.5:ENST00000380966.8:ENST00000399069.8:ENST00000577157.1:ENST00000576382.1:ENST00000576625.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	45	2	2.14573	3.61616	5.08659	0.0238593	0.00226401	0.129075	0.0425438
chr17	47675812	47675911	6622860	0	+	0.464646	(0.44,0.476]	chr17	646092	2	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	KPNB1	ENSG00000108424.11	ENST00000535458.6:ENST00000583648.6:ENST00000290158.9:ENST00000540627.5:ENST00000582097.5:ENST00000677341.1:ENST00000579901.5:ENST00000580573.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	45	2	2.14573	3.61616	5.08659	0.0238593	0.00226401	0.129075	0.0425438
chr3	15246073	15246167	1373283	0	+	0.468085	(0.44,0.476]	chr3	144806	3	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	CAPN7	ENSG00000131375.10	ENST00000253693.7:ENST00000443567.5:ENST00000463417.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	45	2	2.14573	3.61616	5.08659	0.0238593	0.00226401	0.129075	0.0425438
chr12	53597058	53597157	5328722	0	-	0.393939	(0.378,0.408]	chr12	508398	441	INTRON	INTRON	ATF7	ENSG00000170653.19	ENST00000548446.6:ENST00000420353.7:ENST00000456903.8:ENST00000588232.5:ENST00000551480.2:ENST00000588078.5:ENST00000591397.1:ENST00000548118.6	protein_coding	protein_coding	protein_coding	protein_coding	2	46	2	2.11103	3.616155	5.12128	0.0266911	0.00251746	0.134419	0.0446195
chr17	74204688	74204788	6672384	0	+	0.41	(0.408,0.44]	chr17	651049	6	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	RPL38	ENSG00000172809.13	ENST00000439590.6:ENST00000530646.1:ENST00000311111.11:ENST00000584577.5:ENST00000534490.5:ENST00000533498.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	95	2	1.73272	3.6160300000000003	5.49934	0.0113502	1.5076e-4	0.0886611	0.0106137
chr3	197079033	197079129	1901285	0	-	0.34375	(0.32,0.35]	chr3	190532	1	INTRON	INTRON	DLG1	ENSG00000075711.21	ENST00000667157.1:ENST00000346964.6:ENST00000656428.1:ENST00000663148.1:ENST00000655488.1:ENST00000357674.9:ENST00000671185.1:ENST00000658701.1:ENST00000667104.1:ENST00000661336.1:ENST00000669565.1:ENST00000670455.1:ENST00000656087.1:ENST00000670366.1:ENST00000653583.1:ENST00000653795.1:ENST00000671246.1:ENST00000661453.1:ENST00000665728.1:ENST00000664564.1:ENST00000653331.1:ENST00000660432.1:ENST00000660898.1:ENST00000657381.1:ENST00000659221.1:ENST00000654737.1:ENST00000669332.1:ENST00000659716.1:ENST00000660553.1:ENST00000664991.1:ENST00000419354.5:ENST00000661440.1:ENST00000667971.1:ENST00000670935.1:ENST00000668578.1:ENST00000666007.1:ENST00000661229.1:ENST00000660237.1:ENST00000657098.1:ENST00000661013.1:ENST00000436682.6:ENST00000452595.5:ENST00000662727.1:ENST00000422288.6:ENST00000448528.6:ENST00000443183.5:ENST00000656944.1:ENST00000392382.6:ENST00000450955.5:ENST00000658155.1:ENST00000669714.1:ENST00000654733.1:ENST00000469073.2:ENST00000419227.5:ENST00000392381.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	86	2	3.31533	3.615995	3.91666	0.00323121	1.54585e-4	0.0507087	0.0106835
chr15	27236751	27236851	5984811	0	+	0.43	(0.408,0.44]	chr15	569164	2096	INTRON	INTRON	GABRG3	ENSG00000182256.13	ENST00000615808.5:ENST00000555083.5	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	2.89795	3.6159749999999997	4.334	0.011982	0.0110735	0.0962115	0.0873897
chr8	123376061	123376160	4042436	0	-	0.484848	(0.476,0.515]	chr8	368782	30	INTRON	INTRON	ATAD2	ENSG00000156802.13	ENST00000287394.10:ENST00000517666.5:ENST00000521903.5:ENST00000519124.5:ENST00000521496.5:ENST00000530065.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	217	2	3.23818	3.6159049999999997	3.99363	2.54589e-5	2.99923e-7	0.00416607	2.73247e-4
chr1	113759290	113759388	525428	0	-	0.520408	(0.515,0.57]	chr1	61819	7	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	PHTF1	ENSG00000116793.16	ENST00000369604.6:ENST00000369600.5:ENST00000369598.5:ENST00000357783.6:ENST00000493212.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	65	2	3.30665	3.615825	3.925	0.00213226	8.71525e-5	0.041756	0.00783545
chr11	9237359	9237459	4908792	0	-	0.46	(0.44,0.476]	chr11	460107	294	INTRON	INTRON	DENND5A	ENSG00000184014.9	ENST00000328194.8:ENST00000681203.1:ENST00000530780.2:ENST00000679999.1:ENST00000680470.1:ENST00000680554.1:ENST00000681425.1:ENST00000679568.1:ENST00000679446.1:ENST00000680294.1:ENST00000680742.1:ENST00000680885.1:ENST00000530044.5:ENST00000526707.5:ENST00000532696.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	54	2	2.03266	3.61573	5.1988	0.0155853	0.00151532	0.109411	0.0352794
chr19	5598292	5598388	7124100	0	-	0.447917	(0.44,0.476]	chr19	716987	1	SS5_PROX	SS5_PROX:INTRON	SAFB2	ENSG00000130254.12	ENST00000252542.9	protein_coding	protein_coding	protein_coding	protein_coding	3	54	2	2.03266	3.61573	5.1988	0.0155853	0.00151532	0.109411	0.0352794
chr17	42273404	42273503	6772199	0	-	0.323232	(0.32,0.35]	chr17	666975	8	INTRON	INTRON	STAT5B:ENSG00000278829	ENSG00000173757.10:ENSG00000278829.1	ENST00000293328.8:ENST00000468312.1:ENST00000415845.1:ENST00000617211.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	4	68	2	1.68188	3.61566	5.54944	0.031521	9.42646e-4	0.144381	0.0280811
chr3	177124736	177124835	1871715	0	-	0.282828	(0.28,0.32]	chr3	187410	41	INTRON	INTRON	TBL1XR1	ENSG00000177565.18	ENST00000457928.7:ENST00000430069.5:ENST00000673974.1:ENST00000352800.10:ENST00000422442.6:ENST00000428970.5:ENST00000424913.5:ENST00000437738.5:ENST00000431421.5:ENST00000635794.1:ENST00000630796.2:ENST00000450267.5:ENST00000630833.2:ENST00000431674.5:ENST00000422066.5:ENST00000443315.5:ENST00000627825.2:ENST00000427349.5:ENST00000413084.5:ENST00000637137.1:ENST00000491623.2:ENST00000637544.1:ENST00000636478.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	53	2	2.42868	3.615615	4.80255	0.0137406	0.0105331	0.0949306	0.0908969
chr7	135969628	135969728	3649395	0	-	0.31	(0.28,0.32]	chr7	339214	176	INTRON	INTRON	MTPN	ENSG00000105887.11	ENST00000393085.4:ENST00000435723.1	protein_coding	protein_coding	protein_coding	protein_coding	2	53	2	2.42868	3.615615	4.80255	0.0137406	0.0105331	0.0949306	0.0908969
chr19	47267776	47267872	7084819	0	+	0.479167	(0.476,0.515]	chr19	708866	6	INTRON	INTRON	CCDC9	ENSG00000105321.14	ENST00000643617.1:ENST00000221922.11:ENST00000600117.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	74	2	3.37632	3.6155850000000003	3.85485	0.00195267	1.63076e-4	0.0400465	0.0109774
chr7	65056319	65056419	3321555	0	+	0.53	(0.515,0.57]	chr7	308810	174	INTRON	INTRON	CCT6P3	ENSG00000234585.6	ENST00000419314.5:ENST00000426828.5	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript	2	41	2	2.39351	3.615575	4.83764	0.0100431	0.00279527	0.0881096	0.0469265
chr2	54996993	54997093	1120869	0	-	0.29	(0.28,0.32]	chr2	120142	89	INTRON	INTRON	RTN4	ENSG00000115310.19	ENST00000394609.6:ENST00000404909.5:ENST00000394611.6:ENST00000317610.11:ENST00000357732.8:ENST00000337526.11:ENST00000357376.7:ENST00000405240.5:ENST00000438462.1	protein_coding	protein_coding	protein_coding	protein_coding	2	94	2	3.19774	3.6155600000000003	4.03338	0.00548491	1.04313e-4	0.0648867	0.00863456
chr9	100054697	100054795	4308202	0	-	0.336735	(0.32,0.35]	chr9	395800	8	INTRON	INTRON	ERP44	ENSG00000023318.9	ENST00000262455.7:ENST00000685319.1:ENST00000691188.1:ENST00000687025.1:ENST00000687093.1:ENST00000690739.1:ENST00000687017.1:ENST00000690317.1:ENST00000691823.1:ENST00000686275.1:ENST00000689406.1:ENST00000684842.1:ENST00000688230.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	40	2	2.23182	3.61552	4.99922	0.068598	0.00223907	0.184298	0.0435144
chr1	22057499	22057599	42249	0	+	0.52	(0.515,0.57]	chr1	5072	13	INTRON	INTRON	ENSG00000289694:CDC42	ENSG00000289694.1:ENSG00000070831.18	ENST00000695855.1:ENST00000695856.1:ENST00000344548.8:ENST00000400259.5:ENST00000667384.2:ENST00000411827.2:ENST00000695858.1:ENST00000695857.1:ENST00000315554.14:ENST00000695859.1:ENST00000498236.1:ENST00000656825.1:ENST00000651171.1:ENST00000652582.1:ENST00000695860.1:ENST00000695796.1:ENST00000695797.1:ENST00000662562.2:ENST00000695798.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	133	2	2.39709	3.61548	4.83387	7.86638e-4	4.7638e-7	0.0258324	3.96907e-4
chr15	101294256	101294347	6270041	0	-	0.538462	(0.515,0.57]	chr15	598034	5	INTRON	INTRON	SNRPA1	ENSG00000131876.18	ENST00000254193.11:ENST00000558036.5:ENST00000559309.5:ENST00000394082.8:ENST00000540017.6:ENST00000560496.5:ENST00000560383.5:ENST00000558059.5:ENST00000560987.5:ENST00000560856.5:ENST00000558020.1:ENST00000561187.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	41	2	2.1885	3.6153750000000002	5.04225	0.0202537	0.00131841	0.121364	0.0331539
chr13	24895052	24895151	5563397	0	-	0.666667	(0.57,1]	chr13	531735	18	INTRON	INTRON	CENPJ	ENSG00000151849.16	ENST00000381884.9:ENST00000616936.4:ENST00000545981.6:ENST00000418179.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	36	2	2.52633	3.6153000000000004	4.70427	0.0018535	9.25341e-4	0.039946	0.0278396
chr1	113955131	113955200	192060	0	+	0.333333	(0.32,0.35]	chr1	21172	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HIPK1	ENSG00000163349.22	ENST00000426820.7:ENST00000626993.2:ENST00000369559.8:ENST00000369558.5:ENST00000369561.8:ENST00000369555.6:ENST00000340480.8:ENST00000369553.5	protein_coding	protein_coding	protein_coding	protein_coding	1	40	2	2.51061	3.6151549999999997	4.7197	0.0364463	0.00568521	0.138959	0.0678837
chr2	230723253	230723353	1030263	0	+	0.34	(0.32,0.35]	chr2	110002	88	INTRON	INTRON	CAB39	ENSG00000135932.12	ENST00000258418.10:ENST00000409788.7:ENST00000410084.7	protein_coding	protein_coding	protein_coding	protein_coding	1	40	2	2.51061	3.6151549999999997	4.7197	0.0364463	0.00568521	0.138959	0.0678837
chr16	71792765	71792864	6514316	0	-	0.515152	(0.476,0.515]	chr16	631208	29	INTRON	INTRON	AP1G1	ENSG00000166747.13	ENST00000299980.9:ENST00000569748.5:ENST00000393512.7:ENST00000565009.5:ENST00000568327.5:ENST00000450149.6:ENST00000563259.5:ENST00000563104.5:ENST00000569185.5:ENST00000566161.5:ENST00000567583.1:ENST00000565412.5:ENST00000569975.5:ENST00000570297.5:ENST00000570017.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	46	2	2.53671	3.614955	4.6932	0.00753088	0.00624027	0.074841	0.0718843
chr12	106962456	106962555	5218574	0	+	0.414141	(0.408,0.44]	chr12	493944	27	INTRON	INTRON	TMEM263	ENSG00000151135.10	ENST00000548125.5:ENST00000547242.5:ENST00000551489.5:ENST00000550344.5:ENST00000280756.9:ENST00000547081.1	protein_coding	protein_coding	protein_coding	protein_coding	6	76	2	1.74555	3.614855	5.48416	0.0118908	5.43528e-4	0.0962115	0.0215026
chr17	42319163	42319259	6772301	0	-	0.489583	(0.476,0.515]	chr17	667002	16	INTRON	INTRON	STAT3	ENSG00000168610.16	ENST00000264657.10:ENST00000678044.1:ENST00000678906.1:ENST00000678960.1:ENST00000679014.1:ENST00000678043.1:ENST00000677442.1:ENST00000677723.1:ENST00000679166.1:ENST00000678792.1:ENST00000678764.1:ENST00000678048.1:ENST00000678674.1:ENST00000678445.1:ENST00000678913.1:ENST00000677421.1:ENST00000679231.1:ENST00000677030.1:ENST00000678827.1:ENST00000679185.1:ENST00000677820.1:ENST00000678905.1:ENST00000677479.1:ENST00000676636.1:ENST00000678572.1:ENST00000677271.1:ENST00000677152.1:ENST00000677603.1:ENST00000677002.1:ENST00000491272.2:ENST00000677500.1:ENST00000585517.5:ENST00000678535.1:ENST00000677308.1:ENST00000389272.7:ENST00000588969.5:ENST00000677763.1:ENST00000404395.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	48	2	1.99197	3.61483	5.23769	0.039572	5.17244e-4	0.143072	0.0203753
chr1	37877000	37877098	425464	0	-	0.479592	(0.476,0.515]	chr1	51568	9	INTRON	INTRON	INPP5B	ENSG00000204084.13	ENST00000373023.6:ENST00000373024.8:ENST00000458109.6:ENST00000373027.5:ENST00000373026.5	protein_coding	protein_coding	protein_coding	protein_coding	2	48	2	2.10874	3.61473	5.12072	0.0285608	8.42139e-4	0.12666	0.0263691
chr2	241681995	241682072	1349388	0	-	0.480519	(0.476,0.515]	chr2	141802	2	UTR3	UTR3:EXON_MRNA:INTRON	DTYMK	ENSG00000168393.13	ENST00000400770.6:ENST00000305784.7:ENST00000445261.5:ENST00000432348.5:ENST00000420144.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	48	2	2.10874	3.61473	5.12072	0.0285608	8.42139e-4	0.12666	0.0263691
chr15	84681831	84681931	6251681	0	-	0.47	(0.44,0.476]	chr15	596666	6	INTRON	INTRON	SEC11A	ENSG00000140612.14	ENST00000559729.5:ENST00000268220.12:ENST00000560266.5:ENST00000558134.5:ENST00000558217.5:ENST00000455959.7:ENST00000560409.5:ENST00000558196.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	34	2	2.89047	3.6147299999999998	4.33899	0.0206616	0.00955699	0.110999	0.0863913
chr17	5426790	5426889	6551796	0	+	0.474747	(0.44,0.476]	chr17	636016	6	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	RPAIN	ENSG00000129197.15	ENST00000573577.5:ENST00000571558.5:ENST00000575599.5:ENST00000571043.5:ENST00000571613.5:ENST00000539417.6:ENST00000381208.9:ENST00000536255.6:ENST00000327154.10:ENST00000381209.8:ENST00000575112.5:ENST00000570883.5:ENST00000573126.1:ENST00000405578.8:ENST00000574003.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	34	2	2.89047	3.6147299999999998	4.33899	0.0206616	0.00955699	0.110999	0.0863913
chr3	128750241	128750341	1497451	0	+	0.46	(0.44,0.476]	chr3	156330	235	INTRON	INTRON	RAB7A	ENSG00000075785.14	ENST00000676214.1:ENST00000675864.1:ENST00000675712.1:ENST00000676425.1:ENST00000490093.6:ENST00000675342.1:ENST00000265062.8:ENST00000674748.1:ENST00000493186.6:ENST00000482525.5:ENST00000491681.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	34	2	2.89047	3.6147299999999998	4.33899	0.0206616	0.00955699	0.110999	0.0863913
chr6	158588384	158588482	3021886	0	+	0.459184	(0.44,0.476]	chr6	281816	26	INTRON	INTRON	TMEM181	ENSG00000146433.10	ENST00000367090.4:ENST00000684151.1	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	2.89047	3.6147299999999998	4.33899	0.0206616	0.00955699	0.110999	0.0863913
chr20	44931484	44931561	7278157	0	+	0.350649	(0.35,0.378]	chr20	739961	3	SS3_PROX	SS3_PROX:INTRON	PABPC1L	ENSG00000101104.13	ENST00000255136.8:ENST00000217073.7:ENST00000537323.5:ENST00000217074.9:ENST00000490798.6:ENST00000476056.6:ENST00000674244.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	275	2	3.2343	3.6145	3.9947	3.95338e-5	8.2893e-8	0.00536661	1.24482e-4
chr10	50310472	50310568	4617540	0	-	0.28125	(0.28,0.32]	chr10	425386	20	INTRON	INTRON	SGMS1	ENSG00000198964.14	ENST00000429490.5:ENST00000361781.7	protein_coding	protein_coding	protein_coding	protein_coding	1	42	2	2.32871	3.614165	4.89962	0.0581621	0.00425206	0.167723	0.0595557
chr11	70276012	70276111	4820463	0	+	0.313131	(0.28,0.32]	chr11	449381	32	INTRON	INTRON	PPFIA1	ENSG00000131626.19	ENST00000253925.12:ENST00000389547.7:ENST00000532504.5:ENST00000530746.1:ENST00000532024.1:ENST00000648755.1:ENST00000644155.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	42	2	2.32871	3.614165	4.89962	0.0581621	0.00425206	0.167723	0.0595557
chr2	8981014	8981113	1063342	0	-	0.292929	(0.28,0.32]	chr2	113387	62	INTRON	INTRON	MBOAT2	ENSG00000143797.12	ENST00000305997.8:ENST00000486484.5:ENST00000477073.5:ENST00000462696.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	42	2	2.32871	3.614165	4.89962	0.0581621	0.00425206	0.167723	0.0595557
chr3	44506054	44506154	1676850	0	-	0.29	(0.28,0.32]	chr3	171167	26	INTRON	INTRON	ZNF852	ENSG00000178917.17	ENST00000436261.6:ENST00000489411.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	42	2	2.32871	3.614165	4.89962	0.0581621	0.00425206	0.167723	0.0595557
chr5	82044511	82044611	2403428	0	+	0.31	(0.28,0.32]	chr5	232116	522	INTRON	INTRON	ATG10	ENSG00000152348.16	ENST00000282185.8:ENST00000355178.8:ENST00000458350.7:ENST00000513443.5:ENST00000504770.5:ENST00000513634.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	42	2	2.32871	3.614165	4.89962	0.0581621	0.00425206	0.167723	0.0595557
chrX	110085014	110085114	7700861	0	+	0.29	(0.28,0.32]	chrX	788144	24	INTRON	INTRON	TMEM164	ENSG00000157600.12	ENST00000372072.7:ENST00000372073.5:ENST00000372068.7:ENST00000288381.4:ENST00000461715.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	42	2	2.32871	3.614165	4.89962	0.0581621	0.00425206	0.167723	0.0595557
chr14	92123345	92123444	5806843	0	+	0.616162	(0.57,1]	chr14	550314	6	INTRON	INTRON	CPSF2	ENSG00000165934.13	ENST00000298875.9:ENST00000553427.5:ENST00000554290.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	23	2	2.52405	3.61416	4.70427	0.0263139	9.25341e-4	0.133676	0.0278396
chr5	105347361	105347461	2695900	0	-	0.35	(0.32,0.35]	chr5	254248	1011	INTRON	INTRON	ENSG00000251574	ENSG00000251574.8	ENST00000503650.1	lncRNA	lncRNA	lncRNA	lncRNA	2	54	2	1.94202	3.61416	5.2863	0.0486128	7.56575e-4	0.153946	0.0251966
chr6	26884017	26884110	3071540	0	-	0.645161	(0.57,1]	chr6	285532	1	INTRON	INTRON	GUSBP2	ENSG00000241549.8	ENST00000479900.5:ENST00000463434.5:ENST00000492832.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	1	23	2	2.52405	3.61416	4.70427	0.0263139	9.25341e-4	0.133676	0.0278396
chr9	136810909	136811008	4221772	0	+	0.59596	(0.57,1]	chr9	387668	22	INTRON	INTRON	RABL6	ENSG00000196642.19	ENST00000371671.9:ENST00000311502.12:ENST00000484471.6:ENST00000371663.10:ENST00000357466.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	23	2	2.52405	3.61416	4.70427	0.0263139	9.25341e-4	0.133676	0.0278396
chr12	39308324	39308419	5307227	0	-	0.452632	(0.44,0.476]	chr12	505020	2	INTRON	INTRON	KIF21A	ENSG00000139116.19	ENST00000361418.10:ENST00000547733.1:ENST00000361961.7:ENST00000636569.1:ENST00000552961.5:ENST00000551264.5:ENST00000544797.6:ENST00000541463.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	36	2	2.29842	3.61405	4.92968	0.0552483	0.00171443	0.165463	0.0381936
chr3	123954168	123954267	1804100	0	-	0.464646	(0.44,0.476]	chr3	181267	17	UTR5	UTR5:EXON_MRNA:INTRON	CCDC14	ENSG00000175455.16	ENST00000463996.1:ENST00000409697.8:ENST00000488653.6:ENST00000485727.5:ENST00000495381.5:ENST00000409657.5:ENST00000489746.5:ENST00000433542.7:ENST00000310351.8:ENST00000483247.1:ENST00000435910.5:ENST00000477268.5:ENST00000438440.2:ENST00000417438.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	36	2	2.29842	3.61405	4.92968	0.0552483	0.00171443	0.165463	0.0381936
chr6	17705476	17705576	3066200	0	-	0.45	(0.44,0.476]	chr6	284872	165	INTRON	INTRON	NUP153	ENSG00000124789.12	ENST00000613258.4:ENST00000537253.5:ENST00000262077.3	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	2.29842	3.61405	4.92968	0.0552483	0.00171443	0.165463	0.0381936
chr1	29105235	29105335	60895	0	+	0.47	(0.44,0.476]	chr1	7771	69	INTRON	INTRON	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000373798.5:ENST00000649674.1:ENST00000343067.9:ENST00000349460.9:ENST00000490308.2:ENST00000650132.1:ENST00000649992.1:ENST00000460378.1:ENST00000462032.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	34	2	2.39604	3.61403	4.83202	0.0404291	0.00525002	0.161534	0.0633615
chr2	15204187	15204287	1069544	0	-	0.46	(0.44,0.476]	chr2	114203	134	INTRON	INTRON	NBAS	ENSG00000151779.13	ENST00000417461.5:ENST00000281513.10:ENST00000442506.5	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	2.39604	3.61403	4.83202	0.0404291	0.00525002	0.161534	0.0633615
chr6	17696100	17696200	3066106	0	-	0.47	(0.44,0.476]	chr6	284872	71	INTRON	INTRON	NUP153	ENSG00000124789.12	ENST00000613258.4:ENST00000537253.5:ENST00000262077.3	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	2.39604	3.61403	4.83202	0.0404291	0.00525002	0.161534	0.0633615
chr9	130077040	130077119	4211188	0	+	0.468354	(0.44,0.476]	chr9	386005	2	SS3_PROX	SS3_PROX:INTRON	GPR107	ENSG00000148358.20	ENST00000372406.5:ENST00000372410.7:ENST00000347136.11:ENST00000493417.5:ENST00000610997.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	34	2	2.39604	3.61403	4.83202	0.0404291	0.00525002	0.161534	0.0633615
chr7	75699575	75699674	3560857	0	-	0.575758	(0.57,1]	chr7	331784	445	INTRON	INTRON	HIP1	ENSG00000127946.17	ENST00000336926.11:ENST00000434438.6:ENST00000485723.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	23	2	2.66438	3.614015	4.56365	0.0171563	0.00129848	0.104099	0.0333764
chr8	143584251	143584348	4083159	0	-	0.57732000000000006	(0.57,1]	chr8	370980	1	INTRON	INTRON	EEF1D	ENSG00000104529.19	ENST00000317198.10:ENST00000532400.1:ENST00000529272.5:ENST00000395119.7:ENST00000533833.5:ENST00000528610.5:ENST00000442189.6:ENST00000618139.4:ENST00000526838.5:ENST00000532741.5:ENST00000531621.5:ENST00000529007.5:ENST00000524624.5:ENST00000530191.6:ENST00000534377.6:ENST00000529516.6:ENST00000419152.7:ENST00000531218.6:ENST00000533494.6:ENST00000534380.6:ENST00000530445.6:ENST00000524397.5:ENST00000528382.1:ENST00000526786.5:ENST00000530616.5:ENST00000530848.5:ENST00000534232.5:ENST00000533749.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	23	2	2.66438	3.614015	4.56365	0.0171563	0.00129848	0.104099	0.0333764
chr17	37457126	37457225	6604139	0	+	0.363636	(0.35,0.378]	chr17	642804	61	INTRON	INTRON	TADA2A	ENSG00000276234.5	ENST00000615182.5:ENST00000620628.4:ENST00000614122.4:ENST00000620367.4:ENST00000612272.4:ENST00000615328.4:ENST00000620086.4:ENST00000619777.4:ENST00000619335.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	36	2	2.92952	3.6139550000000003	4.29839	0.0294717	0.00881187	0.128055	0.084878
chr6	13677108	13677208	3058878	0	-	0.36	(0.35,0.378]	chr6	284542	179	INTRON	INTRON	RANBP9	ENSG00000010017.13	ENST00000011619.6	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	2.92952	3.6139550000000003	4.29839	0.0294717	0.00881187	0.128055	0.084878
chr2	32549681	32549781	732790	0	+	0.3	(0.28,0.32]	chr2	84647	2	SS5_PROX	SS5_PROX:INTRON	BIRC6	ENSG00000115760.15	ENST00000421745.7:ENST00000471232.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	39	2	2.80157	3.613935	4.4263	0.0330296	0.0147132	0.133816	0.106558
chr7	75479148	75479247	3558861	0	-	0.30303	(0.28,0.32]	chr7	331555	36	INTRON	INTRON	POM121C:ENSG00000242073	ENSG00000272391.6:ENSG00000242073.2	ENST00000615331.5:ENST00000398379.2:ENST00000415277.2	protein_coding	protein_coding	protein_coding:transcribed_unprocessed_pseudogene	protein_coding:transcribed_unprocessed_pseudogene	1	39	2	2.80157	3.613935	4.4263	0.0330296	0.0147132	0.133816	0.106558
chr1	30959576	30959676	411814	0	-	0.48	(0.476,0.515]	chr1	49653	52	INTRON	INTRON	PUM1	ENSG00000134644.16	ENST00000426105.7:ENST00000373747.7:ENST00000257075.9:ENST00000424085.6:ENST00000525843.5:ENST00000440538.6:ENST00000498419.5:ENST00000373741.8:ENST00000373742.6:ENST00000527498.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	54	2	1.96833	3.61389	5.25945	0.0195007	0.00111445	0.119967	0.0306328
chr2	226867718	226867818	1023984	0	+	0.49	(0.476,0.515]	chr2	109449	4	SS5_PROX	SS5_PROX:INTRON	RHBDD1	ENSG00000144468.17	ENST00000341329.7:ENST00000392062.7	protein_coding	protein_coding	protein_coding	protein_coding	3	54	2	1.96833	3.61389	5.25945	0.0195007	0.00111445	0.119967	0.0306328
chr10	63420540	63420640	4634937	0	-	0.58	(0.57,1]	chr10	426236	397	INTRON	INTRON	JMJD1C	ENSG00000171988.20	ENST00000399262.7:ENST00000633035.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	23	2	2.78409	3.613875	4.44366	0.0116033	0.00210922	0.0889104	0.0425419
chr16	296068	296165	6426286	0	-	0.57732000000000006	(0.57,1]	chr16	617472	20	INTRON	INTRON	AXIN1	ENSG00000103126.15	ENST00000262320.8:ENST00000461023.5:ENST00000354866.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	23	2	2.78409	3.613875	4.44366	0.0116033	0.00210922	0.0889104	0.0425419
chr19	1019287	1019386	7111084	0	-	0.585859	(0.57,1]	chr19	714229	20	INTRON	INTRON	TMEM259	ENSG00000182087.14	ENST00000593068.7:ENST00000333175.9:ENST00000356663.8:ENST00000586704.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	23	2	2.78409	3.613875	4.44366	0.0116033	0.00210922	0.0889104	0.0425419
chr19	14529905	14530002	7024928	0	+	0.618557	(0.57,1]	chr19	698962	3	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	TECR	ENSG00000099797.15	ENST00000600076.5:ENST00000598298.5:ENST00000642961.1:ENST00000215567.10:ENST00000600083.5:ENST00000598987.5:ENST00000601652.5:ENST00000593637.5:ENST00000594807.5:ENST00000599646.1:ENST00000598333.5:ENST00000596953.5:ENST00000597607.5:ENST00000596164.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	23	2	2.78409	3.613875	4.44366	0.0116033	0.00210922	0.0889104	0.0425419
chr19	18514821	18514921	7152942	0	-	0.59	(0.57,1]	chr19	722886	390	INTRON	INTRON	ELL	ENSG00000105656.13	ENST00000262809.9:ENST00000594635.6:ENST00000596915.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	23	2	2.78409	3.613875	4.44366	0.0116033	0.00210922	0.0889104	0.0425419
chr6	17673215	17673314	3065871	0	-	0.575758	(0.57,1]	chr6	284852	33	INTRON	INTRON	NUP153	ENSG00000124789.12	ENST00000613258.4:ENST00000537253.5:ENST00000262077.3	protein_coding	protein_coding	protein_coding	protein_coding	1	23	2	2.78409	3.613875	4.44366	0.0116033	0.00210922	0.0889104	0.0425419
chr7	1436641	1436741	3462034	0	-	0.71	(0.57,1]	chr7	323657	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	MICALL2	ENSG00000164877.19	ENST00000493998.1:ENST00000496184.1:ENST00000472100.5:ENST00000297508.8:ENST00000467783.1:ENST00000467394.5:ENST00000413446.5:ENST00000479007.5:ENST00000471899.5:ENST00000470807.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	23	2	2.78409	3.613875	4.44366	0.0116033	0.00210922	0.0889104	0.0425419
chr1	184872651	184872751	602029	0	-	0.39	(0.378,0.408]	chr1	71746	42	INTRON	INTRON	NIBAN1	ENSG00000135842.17	ENST00000367511.4	protein_coding	protein_coding	protein_coding	protein_coding	1	37	2	2.30961	3.6136850000000003	4.91776	0.055088	0.00196368	0.165463	0.0411469
chr6	57153560	57153660	2878711	0	+	0.52	(0.515,0.57]	chr6	273313	3	SS3_PROX	SS3_PROX:INTRON	ZNF451	ENSG00000112200.17	ENST00000357489.7:ENST00000370706.9:ENST00000491832.6:ENST00000504603.1:ENST00000508548.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	42	2	2.62817	3.613655	4.59914	0.00616166	0.004048	0.0676501	0.0578376
chr11	77928947	77929047	4996555	0	-	0.46	(0.44,0.476]	chr11	472159	4	SS3_PROX	SS3_PROX:INTRON	INTS4	ENSG00000149262.18	ENST00000695303.1:ENST00000695096.1:ENST00000695097.1:ENST00000695099.1:ENST00000695100.1:ENST00000695101.1:ENST00000695102.1:ENST00000695098.1:ENST00000525931.2:ENST00000695310.1:ENST00000524766.6:ENST00000695306.1:ENST00000695307.1:ENST00000695308.1:ENST00000695309.1:ENST00000695305.1:ENST00000695304.1:ENST00000695103.1:ENST00000695316.1:ENST00000695315.1:ENST00000433818.6:ENST00000534064.6:ENST00000535943.2:ENST00000695104.1:ENST00000695317.1:ENST00000695319.1:ENST00000695105.1:ENST00000529807.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	36	2	2.60774	3.61364	4.61954	0.0255874	0.00506805	0.120269	0.0646039
chr19	17242251	17242350	7151198	0	-	0.444444	(0.44,0.476]	chr19	722569	11	INTRON	INTRON	NR2F6	ENSG00000160113.6	ENST00000291442.4:ENST00000596878.1	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	2.60774	3.61364	4.61954	0.0255874	0.00506805	0.120269	0.0646039
chr3	107535687	107535787	1469874	0	+	0.48	(0.476,0.515]	chr3	154137	89	INTRON	INTRON	BBX	ENSG00000114439.19	ENST00000415149.6:ENST00000402543.5:ENST00000325805.13:ENST00000485939.5:ENST00000427402.5:ENST00000416476.6:ENST00000454540.5:ENST00000449335.5:ENST00000431630.5:ENST00000458458.5:ENST00000456817.5:ENST00000456419.5:ENST00000402163.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	45	2	2.13304	3.6136349999999995	5.09423	0.024866	0.00204588	0.132101	0.04086
chr2	87805312	87805410	1172991	0	-	0.469388	(0.44,0.476]	chr2	125238	43	INTRON	INTRON	RGPD2	ENSG00000185304.16	ENST00000398146.5	protein_coding	protein_coding	protein_coding	protein_coding	2	74	2	3.43305	3.61346	3.79387	0.00159668	2.19099e-4	0.0364566	0.0129737
chrX	104185069	104185168	7698132	0	+	0.474747	(0.44,0.476]	chrX	787762	89	INTRON	INTRON	FAM199X	ENSG00000123575.9	ENST00000493442.2	protein_coding	protein_coding	protein_coding	protein_coding	2	74	2	3.43305	3.61346	3.79387	0.00159668	2.19099e-4	0.0364566	0.0129737
chr2	175957279	175957379	1272748	0	-	0.49	(0.476,0.515]	chr2	134550	92	INTRON	INTRON	LNPK	ENSG00000144320.14	ENST00000272748.9:ENST00000544803.5:ENST00000409660.5	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	2.23335	3.613385	4.99342	0.0634557	0.00139274	0.177047	0.0341261
chr6	36089892	36089992	2853688	0	+	0.38	(0.378,0.408]	chr6	269663	129	INTRON	INTRON	MAPK14	ENSG00000112062.11	ENST00000229795.7:ENST00000468133.5:ENST00000229794.9:ENST00000310795.8:ENST00000491957.5:ENST00000496250.5:ENST00000474429.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	37	2	2.53503	3.61336	4.69169	0.0319942	0.00432302	0.13174	0.0599409
chr6	147746052	147746152	2991459	0	+	0.4	(0.378,0.408]	chr6	280177	86	INTRON	INTRON	ENSG00000227681	ENSG00000227681.5	ENST00000427015.1	lncRNA	lncRNA	lncRNA	lncRNA	1	37	2	2.53503	3.61336	4.69169	0.0319942	0.00432302	0.13174	0.0599409
chr5	146214993	146215093	2514228	0	+	0.36	(0.35,0.378]	chr5	240152	108	INTRON	INTRON	ENSG00000275740:RBM27	ENSG00000275740.1:ENSG00000091009.8	ENST00000506502.2:ENST00000265271.7	protein_coding	protein_coding	protein_coding	protein_coding	4	65	2	1.77736	3.613275	5.44919	0.0225073	9.66659e-4	0.124921	0.0282401
chr16	89396061	89396161	6542648	0	-	0.35	(0.32,0.35]	chr16	634248	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000647238.1:ENST00000644045.1:ENST00000643147.1:ENST00000644139.1:ENST00000568512.6:ENST00000566973.1:ENST00000562211.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	54	2	1.88909	3.61327	5.33745	0.0553737	6.1485e-4	0.165463	0.0223951
chr2	169539750	169539850	1261349	0	-	0.3	(0.28,0.32]	chr2	133626	3	SS5_PROX	SS5_PROX:INTRON	FASTKD1	ENSG00000138399.18	ENST00000453153.7:ENST00000453929.6:ENST00000490590.5:ENST00000495505.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	39	2	2.29724	3.613265	4.92929	0.0554156	0.0098607	0.18407	0.0838128
chr8	73846370	73846470	3971935	0	-	0.29	(0.28,0.32]	chr8	364247	155	INTRON	INTRON	ENSG00000258677:UBE2W	ENSG00000258677.2:ENSG00000104343.21	ENST00000358757.5:ENST00000602593.6:ENST00000517608.5:ENST00000650817.1:ENST00000422906.6:ENST00000419880.7:ENST00000651945.1:ENST00000519277.5:ENST00000519255.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	39	2	2.29724	3.613265	4.92929	0.0554156	0.0098607	0.18407	0.0838128
chr1	24672883	24672982	46056	0	+	0.343434	(0.32,0.35]	chr1	5759	7	UTR3	UTR3:EXON_MRNA	SRRM1	ENSG00000133226.18	ENST00000323848.14	protein_coding	protein_coding	protein_coding	protein_coding	10	357	2	3.50843	3.6131900000000003	3.71795	1.09919e-5	1.3093e-7	0.00262204	1.636e-4
chr4	105709120	105709206	2011900	0	+	0.569767	(0.515,0.57]	chr4	200417	5	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	GSTCD	ENSG00000138780.15	ENST00000512828.1:ENST00000394730.7:ENST00000515279.6:ENST00000515255.5:ENST00000484843.1:ENST00000507281.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	49	2	2.06206	3.613095	5.16413	0.0135396	8.14815e-4	0.101363	0.0263656
chr19	16656864	16656963	7150758	0	-	0.434343	(0.408,0.44]	chr19	722466	11	INTRON	INTRON	SMIM7	ENSG00000214046.9	ENST00000465250.6:ENST00000481671.6:ENST00000594662.5:ENST00000597781.5:ENST00000598278.5:ENST00000593409.5:ENST00000487803.5:ENST00000627144.2:ENST00000487416.7:ENST00000593404.5:ENST00000597711.5:ENST00000599310.5:ENST00000397349.6:ENST00000602194.5:ENST00000600740.5:ENST00000461488.5:ENST00000463051.5:ENST00000358726.6:ENST00000594507.5:ENST00000461364.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	54	2	1.93002	3.61307	5.29612	0.022095	0.00113523	0.123903	0.0307488
chr19	882512	882611	7110642	0	-	0.575758	(0.57,1]	chr19	714100	4	INTRON	INTRON	MED16	ENSG00000175221.16	ENST00000395808.7:ENST00000312090.10:ENST00000325464.6:ENST00000607471.5:ENST00000606248.5:ENST00000586017.5:ENST00000592943.5:ENST00000606828.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	74	2	2.88713	3.61305	4.33897	7.53251e-5	3.16397e-6	0.00777227	0.00115089
chr19	3059498	3059595	7117508	0	-	0.350515	(0.35,0.378]	chr19	715688	14	INTRON	INTRON	TLE5	ENSG00000104964.15	ENST00000221561.12:ENST00000327141.9:ENST00000586742.5:ENST00000592330.5:ENST00000586839.1:ENST00000585557.1:ENST00000585782.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	36	2	2.30249	3.6130199999999997	4.92355	0.0519726	0.00573514	0.176696	0.0657377
chr3	126455963	126456063	1811261	0	-	0.4	(0.378,0.408]	chr3	181908	127	INTRON	INTRON	ZXDC	ENSG00000070476.15	ENST00000389709.8:ENST00000515545.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	55	2	1.94559	3.61296	5.28033	0.0211434	0.00143651	0.122929	0.0340925
chr16	67903835	67903934	6368945	0	+	0.40404	(0.378,0.408]	chr16	612027	8	INTRON	INTRON	PSKH1	ENSG00000159792.10	ENST00000291041.6:ENST00000570631.5	protein_coding	protein_coding	protein_coding	protein_coding	2	47	2	1.89621	3.612945	5.32968	0.0488044	0.00119786	0.173377	0.0315806
chr2	113593280	113593379	854172	0	+	0.474747	(0.44,0.476]	chr2	95858	42	INTRON	INTRON	WASH2P	ENSG00000146556.15	ENST00000686495.1:ENST00000692602.1:ENST00000688542.1:ENST00000685302.1:ENST00000685435.1:ENST00000685518.1:ENST00000691953.1:ENST00000453662.6	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	3	54	2	2.08211	3.612945	5.14378	0.0130715	0.00184943	0.0996047	0.0388609
chr19	2203179	2203279	6996572	0	+	0.52	(0.515,0.57]	chr19	693472	4	SS5_PROX	SS5_PROX:INTRON	DOT1L	ENSG00000104885.19	ENST00000398665.8:ENST00000686010.1	protein_coding	protein_coding	protein_coding	protein_coding	4	56	2	1.84511	3.6129350000000002	5.38076	0.0167182	3.24968e-4	0.110511	0.0165891
chr11	95814177	95814265	4853772	0	+	0.488636	(0.476,0.515]	chr11	452709	2	INTRON	INTRON	CEP57	ENSG00000166037.11	ENST00000537677.5:ENST00000325486.9:ENST00000325542.10:ENST00000544522.5:ENST00000539855.5:ENST00000541365.5:ENST00000540830.5:ENST00000538658.5:ENST00000541150.5:ENST00000536587.5:ENST00000541768.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	36	2	2.69967	3.6128349999999996	4.526	0.0195838	0.00699701	0.109483	0.0754576
chr14	55391397	55391492	5900796	0	-	0.494737	(0.476,0.515]	chr14	560538	2	SS3_PROX	SS3_PROX:INTRON	ATG14	ENSG00000126775.9	ENST00000247178.6	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	2.69967	3.6128349999999996	4.526	0.0195838	0.00699701	0.109483	0.0754576
chr14	69391449	69391548	5916236	0	-	0.50505	(0.476,0.515]	chr14	562062	40	INTRON	INTRON	ERH	ENSG00000100632.11	ENST00000557016.6:ENST00000216520.6:ENST00000557697.1:ENST00000555373.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	36	2	2.69967	3.6128349999999996	4.526	0.0195838	0.00699701	0.109483	0.0754576
chr21	43671519	43671615	7412883	0	+	0.510417	(0.476,0.515]	chr21	755411	12	INTRON	INTRON	RRP1B	ENSG00000160208.13	ENST00000340648.6	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	2.69967	3.6128349999999996	4.526	0.0195838	0.00699701	0.109483	0.0754576
chr1	193242943	193243043	285843	0	+	0.48	(0.476,0.515]	chr1	32861	47	INTRON	INTRON	CDC73	ENSG00000134371.14	ENST00000643006.1:ENST00000367435.5:ENST00000650197.1:ENST00000648071.1:ENST00000635846.1:ENST00000649613.1:ENST00000477868.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	34	2	2.87879	3.612635	4.34648	0.0193566	0.00999149	0.108861	0.0879541
chr3	149049931	149050031	1840622	0	-	0.5	(0.476,0.515]	chr3	185120	3	SS5_PROX	SS5_PROX:INTRON	HLTF	ENSG00000071794.16	ENST00000310053.10:ENST00000465259.5:ENST00000392912.6:ENST00000494055.5:ENST00000467858.1	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	2.87879	3.612635	4.34648	0.0193566	0.00999149	0.108861	0.0879541
chr11	47548902	47549002	4950361	0	-	0.29	(0.28,0.32]	chr11	464246	243	INTRON	INTRON	CELF1	ENSG00000149187.19	ENST00000310513.10:ENST00000687097.1:ENST00000531165.5:ENST00000530151.5:ENST00000525841.5:ENST00000526419.1	protein_coding	protein_coding	protein_coding	protein_coding	1	42	2	2.39347	3.61256	4.83165	0.0504457	0.00527257	0.156383	0.0656295
chr3	15086286	15086373	1620232	0	-	0.310345	(0.28,0.32]	chr3	167529	3	SS3_PROX	SS3_PROX:INTRON	RBSN	ENSG00000131381.12	ENST00000253699.7:ENST00000476527.6:ENST00000449964.6:ENST00000441057.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	42	2	2.39347	3.61256	4.83165	0.0504457	0.00527257	0.156383	0.0656295
chr9	131488196	131488296	4217945	0	+	0.51	(0.476,0.515]	chr9	386869	1	SS5_PROX	SS5_PROX:INTRON	PRRC2B	ENSG00000288701.1	ENST00000684596.1:ENST00000683519.1:ENST00000682501.1:ENST00000682662.1:ENST00000683161.1	protein_coding	protein_coding	protein_coding	protein_coding	11	322	2	3.38262	3.61254	3.84246	5.05942e-7	4.18858e-7	4.16507e-4	3.37394e-4
chr9	131396559	131396658	4216994	0	+	0.50505	(0.476,0.515]	chr9	386720	19	INTRON	INTRON	PRRC2B	ENSG00000288701.1	ENST00000682525.1:ENST00000684596.1:ENST00000683519.1:ENST00000682501.1	protein_coding	protein_coding	protein_coding	protein_coding	2	53	2	2.69886	3.61243	4.526	0.00699701	0.00385209	0.0754576	0.0542786
chr2	168860499	168860599	1259482	0	-	0.53	(0.515,0.57]	chr2	133363	259	INTRON	INTRON	SPC25	ENSG00000152253.9	ENST00000479309.6	protein_coding	processed_transcript	protein_coding	processed_transcript	1	31	2	2.9114	3.61233	4.31326	0.0141817	0.00826019	0.0959618	0.0813266
chr13	77023847	77023947	5621985	0	-	0.44	(0.408,0.44]	chr13	536017	16	INTRON	INTRON	FBXL3	ENSG00000005812.11	ENST00000355619.10:ENST00000417323.1:ENST00000472949.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	34	2	2.89193	3.6121549999999996	4.33238	0.0218901	0.00950364	0.11491	0.0863579
chr16	70536490	70536585	6385269	0	+	0.431579	(0.408,0.44]	chr16	613897	7	INTRON	INTRON	SF3B3	ENSG00000189091.13	ENST00000302516.10	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	2.89193	3.6121549999999996	4.33238	0.0218901	0.00950364	0.11491	0.0863579
chr17	60332295	60332395	6805276	0	-	0.42	(0.408,0.44]	chr17	672360	272	INTRON	INTRON	USP32	ENSG00000170832.13	ENST00000300896.9:ENST00000590133.5:ENST00000589335.5:ENST00000393003.7:ENST00000588898.1:ENST00000589761.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	34	2	2.89193	3.6121549999999996	4.33238	0.0218901	0.00950364	0.11491	0.0863579
chr2	131515001	131515101	867178	0	+	0.42	(0.408,0.44]	chr2	97377	60	INTRON	INTRON	SMPD4BP	ENSG00000152117.18	ENST00000438378.2:ENST00000415574.6	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript:transcribed_processed_pseudogene	1	34	2	2.89193	3.6121549999999996	4.33238	0.0218901	0.00950364	0.11491	0.0863579
chr21	38061168	38061268	7463493	0	-	0.41	(0.408,0.44]	chr21	760281	60	INTRON	INTRON	DSCR4	ENSG00000184029.9	ENST00000398948.5:ENST00000328264.7	lncRNA	lncRNA	lncRNA	lncRNA	1	34	2	2.89193	3.6121549999999996	4.33238	0.0218901	0.00950364	0.11491	0.0863579
chr22	41839553	41839653	7526062	0	+	0.41	(0.408,0.44]	chr22	769353	58	INTRON	INTRON	SREBF2	ENSG00000198911.12	ENST00000612482.4:ENST00000361204.9:ENST00000424354.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	34	2	2.89193	3.6121549999999996	4.33238	0.0218901	0.00950364	0.11491	0.0863579
chr18	1353306	1353406	6941713	0	-	0.21	[0,0.28]	chr18	686585	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	LINC00470	ENSG00000132204.14	ENST00000657423.1:ENST00000657618.1:ENST00000584090.5:ENST00000660947.1:ENST00000669242.1:ENST00000660475.1:ENST00000653775.1:ENST00000661931.1:ENST00000412816.7:ENST00000577867.5:ENST00000584492.5:ENST00000667416.1:ENST00000661852.1:ENST00000657919.1:ENST00000661646.1:ENST00000667776.1:ENST00000654559.1:ENST00000661233.1:ENST00000653213.1:ENST00000659094.1:ENST00000660964.1:ENST00000577403.6:ENST00000660358.1:ENST00000669153.1:ENST00000657121.1:ENST00000655957.1:ENST00000659289.1:ENST00000665133.1:ENST00000671558.1:ENST00000666542.1:ENST00000663512.1:ENST00000582862.6:ENST00000578835.5:ENST00000669312.1:ENST00000581430.5:ENST00000581212.1:ENST00000658090.1:ENST00000667225.1	lncRNA	lncRNA	lncRNA	lncRNA	3	76	2	1.69895	3.61207	5.52519	0.0568939	8.21427e-4	0.167723	0.0261674
chr19	52918937	52919037	7209043	0	-	0.56	(0.515,0.57]	chr19	731734	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	ZNF888	ENSG00000213793.6	ENST00000638862.2:ENST00000596623.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	45	2	2.53845	3.612065	4.68568	0.00632226	0.00270027	0.0687526	0.0479115
chr22	29525041	29525140	7574540	0	-	0.50505	(0.476,0.515]	chr22	774680	36	INTRON	INTRON	THOC5	ENSG00000100296.14	ENST00000490103.6:ENST00000397871.5:ENST00000397872.5:ENST00000442555.5:ENST00000358079.8:ENST00000397873.6:ENST00000484924.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	34	2	2.38442	3.6120200000000002	4.83962	0.0417472	0.00480934	0.161736	0.0602209
chr6	43055044	43055144	3095947	0	-	0.5	(0.476,0.515]	chr6	289794	1	SS5_PROX	SS5_PROX:INTRON	MRPL2	ENSG00000112651.12	ENST00000388752.8:ENST00000230413.9:ENST00000485654.1:ENST00000489623.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	34	2	2.38442	3.6120200000000002	4.83962	0.0417472	0.00480934	0.161736	0.0602209
chr8	90362866	90362966	3793724	0	+	0.51	(0.476,0.515]	chr8	351792	108	INTRON	INTRON	LINC00534	ENSG00000253394.7	ENST00000662145.1:ENST00000655523.1:ENST00000517400.6:ENST00000658299.1:ENST00000663329.1:ENST00000658342.1:ENST00000523283.6:ENST00000655219.1:ENST00000662692.1:ENST00000667296.1:ENST00000667565.1:ENST00000523406.2:ENST00000659030.1:ENST00000653734.1:ENST00000654785.1:ENST00000524361.5:ENST00000668745.1:ENST00000661519.1:ENST00000671657.1:ENST00000655123.1:ENST00000663098.1:ENST00000670903.1:ENST00000654946.1	lncRNA	lncRNA	lncRNA	lncRNA	1	34	2	2.38442	3.6120200000000002	4.83962	0.0417472	0.00480934	0.161736	0.0602209
chr8	140927714	140927814	4079339	0	-	0.51	(0.476,0.515]	chr8	370567	3	SS3_PROX	SS3_PROX:INTRON	PTK2	ENSG00000169398.20	ENST00000696786.1:ENST00000522684.5:ENST00000395218.3:ENST00000521059.5:ENST00000519993.5:ENST00000340930.7:ENST00000519419.5:ENST00000524357.5:ENST00000521791.5:ENST00000523067.5:ENST00000520828.5:ENST00000520475.5:ENST00000519881.5:ENST00000520892.5:ENST00000523803.5:ENST00000521907.5:ENST00000517453.5:ENST00000520045.5:ENST00000521395.5:ENST00000521332.5:ENST00000524040.5:ENST00000523679.1:ENST00000524257.5:ENST00000523797.1:ENST00000519635.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	34	2	2.38442	3.6120200000000002	4.83962	0.0417472	0.00480934	0.161736	0.0602209
chr9	113198554	113198654	4319283	0	-	0.5	(0.476,0.515]	chr9	397325	3	SS5_PROX	SS5_PROX:INTRON	FKBP15	ENSG00000119321.10	ENST00000446284.6:ENST00000238256.8:ENST00000687395.1:ENST00000693409.1:ENST00000686727.1:ENST00000690630.1:ENST00000685068.1:ENST00000688113.1:ENST00000690399.1:ENST00000689059.1:ENST00000689480.1:ENST00000691917.1:ENST00000688949.1:ENST00000685945.1:ENST00000691776.1:ENST00000693271.1:ENST00000414250.2:ENST00000691254.1:ENST00000686828.1:ENST00000692890.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	34	2	2.38442	3.6120200000000002	4.83962	0.0417472	0.00480934	0.161736	0.0602209
chr9	137105213	137105311	4222840	0	+	0.44898	(0.44,0.476]	chr9	387932	37	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	MAN1B1	ENSG00000177239.16	ENST00000682881.1:ENST00000683324.1:ENST00000684138.1:ENST00000683135.1:ENST00000542372.2:ENST00000371587.9:ENST00000684366.1:ENST00000684229.1:ENST00000683355.1:ENST00000682117.1:ENST00000683475.1:ENST00000682425.1:ENST00000684645.1:ENST00000683979.1:ENST00000371589.9:ENST00000535144.6:ENST00000684272.1:ENST00000475449.7:ENST00000684759.1:ENST00000545539.6:ENST00000684144.1:ENST00000683987.1:ENST00000682212.1:ENST00000544448.6:ENST00000684297.1:ENST00000474902.5:ENST00000682964.1:ENST00000535028.6:ENST00000536349.6:ENST00000684336.1:ENST00000540391.5:ENST00000480100.3:ENST00000682502.1:ENST00000536268.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	74	2	3.39322	3.61196	3.8307	0.00187283	1.81621e-4	0.0390476	0.0117212
chr2	84973744	84973844	820289	0	+	0.26	[0,0.28]	chr2	91419	11	INTRON	INTRON	KCMF1	ENSG00000176407.18	ENST00000456682.1:ENST00000409785.9:ENST00000428691.5:ENST00000453448.1	protein_coding	protein_coding	protein_coding	protein_coding	1	46	2	2.44242	3.6119199999999996	4.78142	0.0491024	0.00943974	0.155269	0.0861183
chrX	2493952	2494051	7745548	0	-	0.343434	(0.32,0.35]	chrX	792974	28	INTRON	INTRON	DHRSX:ZBED1	ENSG00000169084.15:ENSG00000214717.12	ENST00000334651.11:ENST00000412516.7:ENST00000444280.6:ENST00000441131.7:ENST00000478825.7:ENST00000430536.7:ENST00000381222.8:ENST00000381223.9:ENST00000652001.1:ENST00000381218.8:ENST00000461691.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	55	2	2.22429	3.611755	4.99922	0.0226421	0.00223907	0.117557	0.0435144
chr22	23216038	23216138	7483562	0	+	0.5	(0.476,0.515]	chr22	763541	163	INTRON	INTRON	BCR	ENSG00000186716.21	ENST00000479188.5:ENST00000359540.7:ENST00000305877.13:ENST00000463770.5:ENST00000487679.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	58	2	1.93059	3.6117	5.29281	0.023762	4.07635e-4	0.118822	0.0181306
chr16	84739020	84739119	6410302	0	+	0.434343	(0.408,0.44]	chr16	615290	52	INTRON	INTRON	USP10	ENSG00000103194.16	ENST00000562743.5:ENST00000540269.6:ENST00000563892.5:ENST00000562092.1:ENST00000219473.12:ENST00000570191.5:ENST00000563048.5:ENST00000562283.5:ENST00000563386.5:ENST00000569038.5:ENST00000570053.1:ENST00000566512.1:ENST00000563023.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	36	2	2.43988	3.61168	4.78348	0.0398236	0.00290352	0.143072	0.0494641
chr9	126807602	126807700	4199376	0	+	0.387755	(0.378,0.408]	chr9	383319	21	INTRON	INTRON	ZBTB43	ENSG00000169155.10	ENST00000449886.5:ENST00000450858.1:ENST00000373464.5	protein_coding	protein_coding	protein_coding	protein_coding	1	39	2	2.90162	3.61168	4.32174	0.0132362	0.0113157	0.0999551	0.0886121
chr8	31052671	31052771	3728120	0	+	0.28	[0,0.28]	chr8	346522	183	INTRON	INTRON	WRN	ENSG00000165392.11	ENST00000650667.1:ENST00000298139.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	68	2	1.91898	3.6116099999999998	5.30424	0.0266433	0.00584781	0.134413	0.0667594
chr11	3368598	3368694	4893743	0	-	0.354167	(0.35,0.378]	chr11	458673	17	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	ZNF195	ENSG00000005801.18	ENST00000528796.5:ENST00000399602.9:ENST00000354599.10:ENST00000343338.11:ENST00000620374.4:ENST00000649622.1:ENST00000429541.6:ENST00000005082.13:ENST00000526601.5:ENST00000438262.6:ENST00000528410.5:ENST00000528218.5:ENST00000529789.5:ENST00000525313.6:ENST00000533036.5:ENST00000529228.5:ENST00000529678.5:ENST00000427810.6:ENST00000534569.5:ENST00000524857.5:ENST00000530643.5:ENST00000618467.4:ENST00000330692.11:ENST00000525502.5:ENST00000526501.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	38	2	2.39939	3.61158	4.82377	0.0458078	0.00325499	0.149888	0.0524329
chr21	7057949	7058049	7365310	0	+	0.36	(0.35,0.378]	chr21	751699	85	INTRON	INTRON	ENSG00000277067	ENSG00000277067.4	ENST00000623095.3:ENST00000622911.1:ENST00000621909.4:ENST00000623394.3:ENST00000624310.1	lncRNA	lncRNA	lncRNA	lncRNA	1	38	2	2.39939	3.61158	4.82377	0.0458078	0.00325499	0.149888	0.0524329
chr4	169624751	169624850	2079917	0	+	0.363636	(0.35,0.378]	chr4	205601	33	INTRON	INTRON	CLCN3	ENSG00000109572.15	ENST00000511092.5:ENST00000347613.8:ENST00000360642.7:ENST00000512813.5:ENST00000513761.6	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	2.39939	3.61158	4.82377	0.0458078	0.00325499	0.149888	0.0524329
chr7	5058377	5058475	3271845	0	+	0.326531	(0.32,0.35]	chr7	304071	2	INTRON	INTRON	RBAK	ENSG00000146587.18	ENST00000353796.7:ENST00000396912.2:ENST00000476992.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	87	2	3.16237	3.611405	4.06044	0.00550276	7.3644e-5	0.0648867	0.00714826
chr15	28165631	28165728	6122423	0	-	0.42268	(0.408,0.44]	chr15	583070	20	INTRON	INTRON	HERC2	ENSG00000128731.18	ENST00000261609.13:ENST00000650509.1:ENST00000569772.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	34	2	2.3975	3.6114	4.8253	0.040266	0.0056738	0.161534	0.0653997
chr16	90143575	90143675	6424311	0	+	0.42	(0.408,0.44]	chr16	617209	57	INTRON	INTRON	FAM157C	ENSG00000260528.6	ENST00000568070.1	lncRNA	lncRNA	lncRNA	lncRNA	1	34	2	2.3975	3.6114	4.8253	0.040266	0.0056738	0.161534	0.0653997
chr2	235522025	235522124	1041615	0	+	0.434343	(0.408,0.44]	chr2	111217	268	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	34	2	2.3975	3.6114	4.8253	0.040266	0.0056738	0.161534	0.0653997
chr7	92749246	92749345	3572386	0	-	0.434343	(0.408,0.44]	chr7	332804	231	INTRON	INTRON	CDK6	ENSG00000105810.10	ENST00000424848.3:ENST00000265734.8	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	2.3975	3.6114	4.8253	0.040266	0.0056738	0.161534	0.0653997
chr5	137752848	137752948	2729004	0	-	0.36	(0.35,0.378]	chr5	256845	73	UTR3	UTR3:EXON_MRNA	HNRNPA0	ENSG00000177733.7	ENST00000314940.7	protein_coding	protein_coding	protein_coding	protein_coding	5	176	2	3.41436	3.61106	3.80776	4.24218e-5	1.13445e-5	0.0055427	0.00249255
chr2	8888273	8888373	1062408	0	-	0.45	(0.44,0.476]	chr2	113358	2	SS3_PROX	SS3_PROX:INTRON	MBOAT2	ENSG00000143797.12	ENST00000305997.8:ENST00000486484.5:ENST00000477073.5:ENST00000474341.5:ENST00000462696.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	45	2	2.39003	3.6110249999999997	4.83202	0.0106488	0.00525002	0.0915714	0.0633615
chr1	227191887	227191987	650449	0	-	0.41	(0.408,0.44]	chr1	77078	309	INTRON	INTRON	CDC42BPA	ENSG00000143776.20	ENST00000366766.8:ENST00000366769.7:ENST00000334218.9:ENST00000366767.7:ENST00000366764.8	protein_coding	protein_coding	protein_coding	protein_coding	1	42	2	3.2451	3.610945	3.97679	0.0299485	0.00337792	0.142135	0.0516884
chr6	87697218	87697318	3152871	0	-	0.44	(0.408,0.44]	chr6	294114	151	INTRON	INTRON	AKIRIN2	ENSG00000135334.9	ENST00000257787.6	protein_coding	protein_coding	protein_coding	protein_coding	1	42	2	3.2451	3.610945	3.97679	0.0299485	0.00337792	0.142135	0.0516884
chr6	2969881	2969978	3047716	0	-	0.546392	(0.515,0.57]	chr6	283599	12	UTR5	UTR5:EXON_MRNA:INTRON	SERPINB6	ENSG00000124570.21	ENST00000643098.1:ENST00000380546.7:ENST00000380539.7:ENST00000380529.5:ENST00000649845.1:ENST00000644178.1:ENST00000612421.3:ENST00000616722.4:ENST00000642543.1:ENST00000644388.1:ENST00000380520.6:ENST00000645580.1:ENST00000644693.1:ENST00000646775.1:ENST00000645421.1:ENST00000643227.1:ENST00000646688.1:ENST00000644777.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	86	2	3.22218	3.6109299999999998	3.99968	2.98683e-4	5.71792e-5	0.0160416	0.00617842
chr6	87228429	87228529	2913994	0	+	0.34	(0.32,0.35]	chr6	275311	46	INTRON	INTRON	ZNF292	ENSG00000188994.13	ENST00000369577.8:ENST00000518845.1:ENST00000339907.8:ENST00000496806.2	protein_coding	protein_coding	protein_coding	protein_coding	4	139	2	2.71724	3.6108900000000004	4.50454	0.00152305	5.92228e-6	0.0353936	0.00170648
chr9	37324251	37324350	4119705	0	+	0.535354	(0.515,0.57]	chr9	375413	20	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000461038.5:ENST00000488607.5:ENST00000463625.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	49	2	2.11724	3.6108599999999997	5.10448	0.0110335	0.0010345	0.0927187	0.029231300000000002
chr2	202290829	202290920	985173	0	+	0.285714	(0.28,0.32]	chr2	105747	4	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NOP58	ENSG00000055044.11	ENST00000264279.10:ENST00000492688.5:ENST00000433543.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	170	2	3.18534	3.61075	4.03616	8.08132e-4	4.54436e-6	0.0263656	0.00144065
chr22	19485893	19485992	7476895	0	+	0.292929	(0.28,0.32]	chr22	762407	15	INTRON	INTRON	CDC45	ENSG00000093009.11	ENST00000407835.6:ENST00000437685.6:ENST00000483431.5:ENST00000438587.6:ENST00000672837.1:ENST00000263201.7:ENST00000404724.7:ENST00000487669.5:ENST00000428937.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	203	2	3.27478	3.61071	3.94664	1.46922e-4	7.84175e-6	0.0110957	0.0020119
chr17	47147547	47147646	6788959	0	-	0.464646	(0.44,0.476]	chr17	669573	32	INTRON	INTRON	CDC27	ENSG00000004897.12	ENST00000066544.8:ENST00000531206.5:ENST00000533415.5:ENST00000527547.5:ENST00000526866.5:ENST00000525495.6:ENST00000574304.5:ENST00000575830.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	45	2	2.0776	3.61069	5.14378	0.0292951	0.00184943	0.141862	0.0388609
chr15	63518684	63518784	6042042	0	+	0.29	(0.28,0.32]	chr15	575355	28	INTRON	INTRON	USP3	ENSG00000140455.17	ENST00000540797.5:ENST00000380324.8:ENST00000561442.5:ENST00000560070.5:ENST00000557884.5:ENST00000558157.5:ENST00000561326.5:ENST00000559873.5:ENST00000559192.5:ENST00000559771.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	88	2	1.62417	3.61066	5.59715	0.0213853	0.00123856	0.123719	0.0322669
chr3	184306934	184307014	1582249	0	+	0.3875	(0.378,0.408]	chr3	163542	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PSMD2	ENSG00000175166.17	ENST00000310118.9:ENST00000439383.5:ENST00000435761.5:ENST00000432855.1:ENST00000496925.5:ENST00000473991.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	70	2	1.70953	3.610635	5.51174	0.0190881	5.93655e-4	0.119229	0.0225024
chr12	93486303	93486402	5189443	0	+	0.363636	(0.35,0.378]	chr12	490847	65	INTRON	INTRON	MRPL42	ENSG00000198015.14	ENST00000549982.6:ENST00000552217.6:ENST00000393128.8:ENST00000552326.5:ENST00000358678.7:ENST00000547098.5:ENST00000551396.5:ENST00000549561.6:ENST00000548545.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	39	2	2.72497	3.610615	4.49626	0.0198266	0.00917582	0.109608	0.0855292
chr6	161061722	161061822	3025195	0	+	0.36	(0.35,0.378]	chr6	282325	114	INTRON	INTRON	MAP3K4	ENSG00000085511.20	ENST00000366919.6:ENST00000392142.9:ENST00000542952.5:ENST00000366920.6:ENST00000348824.11:ENST00000544041.5:ENST00000490904.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	39	2	2.72497	3.610615	4.49626	0.0198266	0.00917582	0.109608	0.0855292
chr2	42285579	42285673	759666	0	+	0.414894	(0.408,0.44]	chr2	86180	5	INTRON	INTRON	EML4	ENSG00000143924.19	ENST00000318522.10:ENST00000402711.6:ENST00000401738.3:ENST00000480320.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	59	2	1.92319	3.61049	5.29779	0.0247322	3.80479e-4	0.12011	0.0176313
chr12	55924491	55924590	5333204	0	-	0.323232	(0.32,0.35]	chr12	509228	98	INTRON	INTRON	PYM1	ENSG00000170473.17	ENST00000408946.7:ENST00000398213.4:ENST00000302533.6:ENST00000557259.5:ENST00000547925.1:ENST00000549939.1:ENST00000454792.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	42	2	2.84812	3.610405	4.37269	0.0154102	0.0147575	0.108569	0.0983813
chr2	55571336	55571435	1124648	0	-	0.333333	(0.32,0.35]	chr2	120617	26	INTRON	INTRON	PPP4R3B	ENSG00000275052.5	ENST00000616407.2:ENST00000611717.4:ENST00000616288.4:ENST00000482826.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	42	2	2.84812	3.610405	4.37269	0.0154102	0.0147575	0.108569	0.0983813
chr11	14660248	14660348	4743781	0	+	0.35	(0.32,0.35]	chr11	439279	148	INTRON	INTRON	PDE3B	ENSG00000152270.9	ENST00000282096.9:ENST00000455098.2:ENST00000534317.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	54	2	2.04237	3.610295	5.17822	0.0375542	0.00115625	0.140222	0.0313436
chr6	18170762	18170862	2826897	0	+	0.44	(0.408,0.44]	chr6	265473	40	INTRON	INTRON	KDM1B	ENSG00000165097.16	ENST00000546309.6:ENST00000650836.2:ENST00000449850.2:ENST00000297792.9	protein_coding	protein_coding	protein_coding	protein_coding	2	50	2	2.36185	3.610285	4.85872	0.0133164	0.00221911	0.094512	0.0435144
chr3	179600054	179600152	1879027	0	-	0.459184	(0.44,0.476]	chr3	187732	9	INTRON	INTRON	MRPL47	ENSG00000136522.14	ENST00000476781.6:ENST00000259038.6:ENST00000392659.2	protein_coding	protein_coding	protein_coding	protein_coding	5	69	2	1.44993	3.61027	5.77061	0.045367	1.44264e-4	0.164236	0.0109794
chr16	22439934	22440034	6321966	0	+	0.51	(0.476,0.515]	chr16	605299	18	INTRON	INTRON	SMG1P1	ENSG00000237296.10	ENST00000446662.5:ENST00000381231.5:ENST00000309865.11:ENST00000691795.1:ENST00000308347.10:ENST00000687936.1:ENST00000691423.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	3	54	2	2.06898	3.610205	5.15143	0.0137491	0.00166579	0.10247	0.0369207
chr6	73291927	73292027	2903788	0	+	0.48	(0.476,0.515]	chr6	274316	15	EXON_LNCRNA	EXON_LNCRNA:INTRON	KHDC1-AS1	ENSG00000229852.4	ENST00000662430.1:ENST00000671298.1:ENST00000653052.1:ENST00000441363.1:ENST00000421315.2	lncRNA	lncRNA	lncRNA	lncRNA	3	54	2	2.06898	3.610205	5.15143	0.0137491	0.00166579	0.10247	0.0369207
chr22	50409866	50409965	7544860	0	+	0.494949	(0.476,0.515]	chr22	771047	26	INTRON	INTRON	PPP6R2	ENSG00000100239.16	ENST00000359139.7:ENST00000395741.7:ENST00000612753.5:ENST00000395744.7:ENST00000216061.9	protein_coding	protein_coding	protein_coding	protein_coding	3	54	2	1.86014	3.6100450000000004	5.35995	0.0277606	7.54256e-4	0.137011	0.0251179
chr2	12431077	12431177	700777	0	+	0.4	(0.378,0.408]	chr2	81548	144	INTRON	INTRON	MIR3681HG	ENSG00000224184.6	ENST00000412294.5:ENST00000653212.1:ENST00000664018.1:ENST00000412606.2:ENST00000653484.1:ENST00000667283.1:ENST00000654108.1	lncRNA	lncRNA	lncRNA	lncRNA	2	46	2	2.41037	3.6100250000000003	4.80968	0.0100185	0.00679828	0.0880217	0.0711802
chr20	385833	385933	7219047	0	+	0.42	(0.408,0.44]	chr20	733511	1	SS5_PROX	SS5_PROX:INTRON	TRIB3	ENSG00000101255.12	ENST00000615226.4:ENST00000217233.9:ENST00000449710.5:ENST00000422053.3	protein_coding	protein_coding	protein_coding	protein_coding	4	65	2	2.2616	3.6098850000000002	4.95817	0.00372419	0.00321416	0.0535094	0.0523065
chr1	37989247	37989347	426533	0	-	0.46	(0.44,0.476]	chr1	51744	3	SS5_PROX	SS5_PROX:INTRON	SF3A3	ENSG00000183431.12	ENST00000373019.5:ENST00000489537.5:ENST00000461869.5:ENST00000470585.5:ENST00000462258.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	167	2	3.5575	3.60987	3.66224	4.3292e-5	6.82607e-6	0.00532052	0.00196049
chr11	59586334	59586433	4954304	0	-	0.282828	(0.28,0.32]	chr11	465198	44	INTRON	INTRON	OSBP	ENSG00000110048.12	ENST00000263847.6:ENST00000525357.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	41	2	3.07744	3.6097900000000003	4.14214	0.0579756	0.00604536	0.167723	0.0700813
chr4	138181090	138181190	2245209	0	-	0.32	(0.28,0.32]	chr4	219464	3	SS3_PROX	SS3_PROX:INTRON	SLC7A11	ENSG00000151012.13	ENST00000280612.9:ENST00000509248.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	41	2	3.07744	3.6097900000000003	4.14214	0.0579756	0.00604536	0.167723	0.0700813
chr5	168498546	168498642	2540545	0	+	0.291667	(0.28,0.32]	chr5	242483	1	INTRON	INTRON	RARS1	ENSG00000113643.9	ENST00000231572.8:ENST00000520013.5:ENST00000518757.5:ENST00000520421.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	41	2	3.07744	3.6097900000000003	4.14214	0.0579756	0.00604536	0.167723	0.0700813
chr16	75003269	75003369	6389461	0	+	0.36	(0.35,0.378]	chr16	614482	5	INTRON	INTRON	ZNRF1	ENSG00000186187.12	ENST00000335325.9:ENST00000320619.10:ENST00000567962.5:ENST00000566250.5:ENST00000564320.1:ENST00000568511.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	52	2	1.75561	3.609775	5.46394	0.0739399	2.60035e-4	0.190914	0.014326
chr6	157908085	157908184	3016619	0	+	0.393939	(0.378,0.408]	chr6	281403	20	EXON_MRNA	EXON_MRNA:INTRON	SNX9	ENSG00000130340.17	ENST00000680863.1:ENST00000679814.1:ENST00000680464.1:ENST00000681186.1:ENST00000679732.1:ENST00000681183.1:ENST00000681534.1:ENST00000681651.1:ENST00000680089.1:ENST00000680078.1:ENST00000680974.1:ENST00000680095.1:ENST00000680015.1:ENST00000681138.1:ENST00000392185.8:ENST00000679790.1:ENST00000680495.1:ENST00000679691.1:ENST00000681881.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	69	2	1.64169	3.609755	5.57782	0.0377255	1.18586e-4	0.14078	0.00930884
chr17	67362018	67362103	6826100	0	-	0.411765	(0.408,0.44]	chr17	674626	4	INTRON	INTRON	PSMD12	ENSG00000197170.10	ENST00000356126.8:ENST00000357146.4:ENST00000584008.5:ENST00000584289.5:ENST00000581618.1:ENST00000579365.5:ENST00000578015.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	36	2	2.36073	3.609725	4.85872	0.0481658	0.00221911	0.153019	0.0435144
chr7	5717661	5717760	3474318	0	-	0.424242	(0.408,0.44]	chr7	324847	5	INTRON	INTRON	RNF216	ENSG00000011275.19	ENST00000425013.6:ENST00000389902.8:ENST00000389900.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	36	2	2.36073	3.609725	4.85872	0.0481658	0.00221911	0.153019	0.0435144
chr6	13692289	13692389	3059030	0	-	0.55	(0.515,0.57]	chr6	284542	331	INTRON	INTRON	RANBP9	ENSG00000010017.13	ENST00000011619.6	protein_coding	protein_coding	protein_coding	protein_coding	5	117	2	3.06327	3.609645	4.15602	3.43075e-5	3.32143e-5	0.00494726	0.00461719
chr3	31600659	31600759	1392078	0	+	0.31	(0.28,0.32]	chr3	145709	2	SS5_PROX	SS5_PROX:INTRON	STT3B	ENSG00000163527.10	ENST00000453168.5:ENST00000295770.4:ENST00000423527.5:ENST00000462235.5:ENST00000436236.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	52	2	2.28998	3.609635	4.92929	0.0166401	0.0098607	0.110511	0.0838128
chr2	3578941	3579038	686938	0	+	0.371134	(0.35,0.378]	chr2	80601	13	EXON_MRNA	EXON_MRNA:INTRON	RPS7	ENSG00000171863.15	ENST00000645674.2:ENST00000646909.1:ENST00000647131.1:ENST00000462576.5:ENST00000403564.5:ENST00000407445.8:ENST00000481006.1:ENST00000406376.1:ENST00000645540.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	38	2	2.47065	3.609625	4.7486	0.0386172	0.00418965	0.142656	0.0591344
chr6	88250319	88250419	3153651	0	-	0.43	(0.408,0.44]	chr6	294127	715	INTRON	INTRON	ENSG00000234426	ENSG00000234426.3	ENST00000648572.1	lncRNA	lncRNA	lncRNA	lncRNA	1	36	2	2.51492	3.60951	4.7041	0.0329839	0.00381677	0.133816	0.0562562
chr7	74877786	74877885	3556628	0	-	0.434343	(0.408,0.44]	chr7	331156	90	INTRON	INTRON	STAG3L2	ENSG00000277072.5	ENST00000651031.1:ENST00000650988.1:ENST00000652688.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	1	36	2	2.51492	3.60951	4.7041	0.0329839	0.00381677	0.133816	0.0562562
chr21	21150069	21150169	7380510	0	+	0.22	[0,0.28]	chr21	752602	1511	INTRON	INTRON	NCAM2	ENSG00000154654.15	ENST00000400546.6	protein_coding	protein_coding	protein_coding	protein_coding	2	56	2	2.05756	3.6094299999999997	5.1613	0.0352544	0.00866441	0.150301	0.0787025
chr3	15805762	15805861	1623903	0	-	0.292929	(0.28,0.32]	chr3	168027	77	INTRON	INTRON	ANKRD28	ENSG00000206560.12	ENST00000399451.6:ENST00000412318.5:ENST00000439830.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	54	2	2.55521	3.6094	4.66359	0.0193496	0.0067419	0.108861	0.0739405
chr6	75674152	75674249	2905683	0	+	0.371134	(0.35,0.378]	chr6	274554	31	INTRON	INTRON	SENP6	ENSG00000112701.18	ENST00000370010.6:ENST00000447266.7:ENST00000327284.12:ENST00000424947.6:ENST00000503501.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	52	2	2.19034	3.60933	5.02832	0.023941	0.00156444	0.119443	0.0365263
chr7	22673324	22673424	3500112	0	-	0.36	(0.35,0.378]	chr7	326683	79	INTRON	INTRON	STEAP1B	ENSG00000105889.16	ENST00000650428.1	protein_coding	processed_transcript	protein_coding	processed_transcript	2	52	2	2.19034	3.60933	5.02832	0.023941	0.00156444	0.119443	0.0365263
chr7	129021456	129021556	3636246	0	-	0.32	(0.28,0.32]	chr7	338142	29	INTRON	INTRON	TNPO3	ENSG00000064419.14	ENST00000627585.2:ENST00000265388.10:ENST00000471234.5:ENST00000482320.5:ENST00000471166.1	protein_coding	protein_coding	protein_coding	protein_coding	2	52	2	1.96475	3.6093149999999996	5.25388	0.0428385	0.00385849	0.162255	0.0542786
chr12	132651702	132651801	5448790	0	-	0.555556	(0.515,0.57]	chr12	521745	4	INTRON	INTRON	POLE	ENSG00000177084.18	ENST00000320574.10:ENST00000672742.1:ENST00000672002.1:ENST00000537064.5:ENST00000535270.5:ENST00000536445.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	41	2	2.45585	3.609145	4.76244	0.00797827	0.00362147	0.0798772	0.0533855
chrX	1594624	1594724	7606343	0	+	0.52	(0.515,0.57]	chrX	779580	4	SS5_PROX	SS5_PROX:INTRON	AKAP17A	ENSG00000197976.12	ENST00000313871.9:ENST00000474361.6:ENST00000381261.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	65	2	3.25547	3.609145	3.96282	0.00261721	7.05073e-5	0.0455413	0.00694412
chr12	124801803	124801901	5445954	0	-	0.489796	(0.476,0.515]	chr12	521248	17	EXON_MRNA	EXON_MRNA:INTRON	SCARB1	ENSG00000073060.17	ENST00000339570.9:ENST00000261693.11:ENST00000679605.1:ENST00000681686.1:ENST00000680926.1:ENST00000680556.1:ENST00000680982.1:ENST00000680596.1:ENST00000681555.1:ENST00000415380.6:ENST00000681117.1:ENST00000681499.1:ENST00000538291.5:ENST00000546215.5:ENST00000535005.5:ENST00000679955.1:ENST00000544327.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	38	2	2.99852	3.60908	4.21964	0.0167715	0.0077575	0.110511	0.0757402
chr6	157656326	157656426	3014310	0	+	0.48	(0.476,0.515]	chr6	281317	23	INTRON	INTRON	ZDHHC14	ENSG00000175048.17	ENST00000414563.6:ENST00000359775.10:ENST00000518214.5:ENST00000341375.12:ENST00000523706.5:ENST00000517432.5:ENST00000422910.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	38	2	2.99852	3.60908	4.21964	0.0167715	0.0077575	0.110511	0.0757402
chr16	89451794	89451894	6543214	0	-	0.29	(0.28,0.32]	chr16	634281	201	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	56	2	2.70831	3.60906	4.50981	0.0275554	0.00378444	0.123904	0.0562562
chr11	9250196	9250296	4908922	0	-	0.34	(0.32,0.35]	chr11	460115	48	INTRON	INTRON	DENND5A	ENSG00000184014.9	ENST00000328194.8:ENST00000681203.1:ENST00000530780.2:ENST00000679999.1:ENST00000680470.1:ENST00000680554.1:ENST00000681425.1:ENST00000679568.1:ENST00000679446.1:ENST00000680294.1:ENST00000680742.1:ENST00000680885.1:ENST00000530044.5:ENST00000526707.5:ENST00000532696.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	50	2	2.45306	3.609035	4.76501	0.0114287	0.00916394	0.0886611	0.0855292
chr17	1387135	1387235	6699478	0	-	0.4	(0.378,0.408]	chr17	655552	170	INTRON	INTRON	YWHAE	ENSG00000108953.17	ENST00000264335.13:ENST00000571732.5:ENST00000573026.1:ENST00000573196.5:ENST00000575977.1:ENST00000469398.5:ENST00000486241.1:ENST00000489287.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	102	2	3.36411	3.60901	3.85391	2.84248e-4	1.36472e-4	0.015495	0.010058
chr15	20498356	20498455	6118866	0	-	0.414141	(0.408,0.44]	chr15	582481	145	INTRON	INTRON	HERC2P3	ENSG00000180229.12	ENST00000428453.5:ENST00000437318.5:ENST00000430598.5:ENST00000429257.5:ENST00000414804.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	5	160	2	3.53855	3.60883	3.67911	8.35406e-5	2.78576e-6	0.00815123	0.00107208
chr3	141916874	141916974	1526487	0	+	0.59	(0.57,1]	chr3	159045	3	SS5_PROX	SS5_PROX:INTRON	ATP1B3	ENSG00000069849.11	ENST00000465172.5:ENST00000286371.8:ENST00000466678.5:ENST00000462082.1:ENST00000482635.1:ENST00000487199.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	189	2	3.30568	3.60881	3.91194	2.73647e-8	1.77746e-8	6.36859e-5	4.22833e-5
chr14	102614317	102614417	5822750	0	+	0.56	(0.515,0.57]	chr14	552490	206	INTRON	INTRON	RCOR1	ENSG00000089902.10	ENST00000262241.7	protein_coding	protein_coding	protein_coding	protein_coding	2	41	2	2.11313	3.608805	5.10448	0.0256725	0.0010345	0.133676	0.029231300000000002
chr3	108049023	108049118	1768858	0	-	0.368421	(0.35,0.378]	chr3	178905	14	INTRON	INTRON	CD47	ENSG00000196776.17	ENST00000361309.6:ENST00000355354.13:ENST00000471694.1:ENST00000517766.5:ENST00000398258.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	55	2	3.02027	3.608685	4.1971	0.0367539	8.40802e-4	0.138959	0.0263691
chr7	152296071	152296171	3679883	0	-	0.36	(0.35,0.378]	chr7	341623	93	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000684262.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	55	2	3.02027	3.608685	4.1971	0.0367539	8.40802e-4	0.138959	0.0263691
chr15	92918289	92918388	6103874	0	+	0.272727	[0,0.28]	chr15	581405	29	INTRON	INTRON	ENSG00000279765:CHD2	ENSG00000279765.3:ENSG00000173575.22	ENST00000629685.2:ENST00000630790.1:ENST00000626874.2:ENST00000394196.9:ENST00000635856.1:ENST00000420239.7:ENST00000628375.2:ENST00000625990.3:ENST00000626782.2:ENST00000629136.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	57	2	2.33097	3.6086100000000005	4.88625	0.0173315	0.0158969	0.109464	0.104099
chr15	41297456	41297540	6004523	0	+	0.238095	[0,0.28]	chr15	571270	3	INTRON	INTRON	OIP5-AS1	ENSG00000247556.6	ENST00000558945.5:ENST00000500949.6:ENST00000560706.5:ENST00000501665.2	lncRNA	lncRNA	lncRNA	lncRNA	2	56	2	2.10688	3.608605	5.11033	0.0307985	0.00991388	0.143385	0.0838372
chr7	66584466	66584566	3540038	0	-	0.28	[0,0.28]	chr7	330272	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	RABGEF1P1	ENSG00000229180.8	ENST00000639011.1:ENST00000692299.1:ENST00000686269.1:ENST00000649635.1:ENST00000686397.1:ENST00000690339.1:ENST00000638711.1:ENST00000692179.1:ENST00000639153.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	2	56	2	2.10688	3.608605	5.11033	0.0307985	0.00991388	0.143385	0.0838372
chr5	65564245	65564345	2368633	0	+	0.27	[0,0.28]	chr5	228217	3	SS5_PROX	SS5_PROX:INTRON	PPWD1	ENSG00000113593.12	ENST00000508982.1:ENST00000535264.5:ENST00000538977.5:ENST00000503435.5:ENST00000515447.5:ENST00000261308.10:ENST00000510930.5:ENST00000511908.5:ENST00000502703.5:ENST00000505380.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	56	2	2.00649	3.6085149999999997	5.21054	0.040391	0.00758653	0.161534	0.0749063
chr5	146248015	146248115	2514566	0	+	0.27	[0,0.28]	chr5	240194	102	INTRON	INTRON	ENSG00000275740:RBM27	ENSG00000275740.1:ENSG00000091009.8	ENST00000506502.2:ENST00000265271.7	protein_coding	protein_coding	protein_coding	protein_coding	2	56	2	2.00649	3.6085149999999997	5.21054	0.040391	0.00758653	0.161534	0.0749063
chr17	60386184	60386284	6805816	0	-	0.42	(0.408,0.44]	chr17	672366	402	INTRON	INTRON	USP32	ENSG00000170832.13	ENST00000300896.9:ENST00000590133.5:ENST00000589335.5:ENST00000393003.7:ENST00000588898.1:ENST00000589761.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	37	2	2.78122	3.60851	4.4358	0.015812	0.00893097	0.101453	0.0849778
chr21	42905074	42905174	7411455	0	+	0.44	(0.408,0.44]	chr21	755308	4	INTRON	INTRON	NDUFV3	ENSG00000160194.18	ENST00000460259.1:ENST00000340344.4:ENST00000354250.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	37	2	2.78122	3.60851	4.4358	0.015812	0.00893097	0.101453	0.0849778
chr7	158771549	158771648	3689227	0	-	0.59596	(0.57,1]	chr7	342387	34	INTRON	INTRON	ESYT2	ENSG00000117868.18	ENST00000251527.10:ENST00000275418.13:ENST00000652148.1	protein_coding	protein_coding	protein_coding	protein_coding	12	149	2	2.35892	3.6085000000000003	4.85808	7.24928e-5	3.38535e-10	0.00709818	2.43276e-6
chr20	47635021	47635121	7282341	0	+	0.48	(0.476,0.515]	chr20	740525	3	SS3_PROX	SS3_PROX:INTRON	NCOA3	ENSG00000124151.19	ENST00000371998.8:ENST00000372004.7:ENST00000371997.3	protein_coding	protein_coding	protein_coding	protein_coding	2	45	2	2.37731	3.608465	4.83962	0.0111793	0.00480934	0.0937192	0.0602209
chr19	21407919	21408016	7040932	0	+	0.412371	(0.408,0.44]	chr19	702031	5	UTR3	UTR3:EXON_MRNA:INTRON	ZNF493	ENSG00000196268.12	ENST00000596302.5:ENST00000392288.7:ENST00000355504.4:ENST00000594390.5:ENST00000339914.6:ENST00000598152.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	45	2	2.39162	3.60846	4.8253	0.0105837	0.0056738	0.0911864	0.0653997
chr1	32229212	32229307	64546	0	+	0.4	(0.378,0.408]	chr1	8290	1	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	EIF3I	ENSG00000084623.12	ENST00000677701.1:ENST00000677760.1:ENST00000676801.1:ENST00000677772.1:ENST00000677202.1:ENST00000677844.1:ENST00000373586.2:ENST00000677676.1:ENST00000678689.1:ENST00000676679.1:ENST00000677198.1:ENST00000678150.1:ENST00000678063.1:ENST00000676554.1:ENST00000676998.1:ENST00000677711.2:ENST00000678842.1:ENST00000678968.1:ENST00000677378.1:ENST00000677640.1:ENST00000678534.1:ENST00000679290.1:ENST00000678889.1:ENST00000677767.1:ENST00000474371.2:ENST00000677540.1:ENST00000676837.1:ENST00000678420.1:ENST00000678162.1:ENST00000677183.1:ENST00000678711.1:ENST00000678883.1:ENST00000677353.1:ENST00000677053.1:ENST00000677580.1:ENST00000679270.1:ENST00000355082.10:ENST00000489353.6:ENST00000471486.6:ENST00000676957.1:ENST00000678306.1:ENST00000679044.1:ENST00000678106.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	34	2	2.63247	3.60837	4.58427	0.0215745	0.0128325	0.123836	0.0926667
chr1	92254776	92254876	504917	0	-	0.4	(0.378,0.408]	chr1	59680	64	INTRON	INTRON	GLMN	ENSG00000174842.17	ENST00000370360.8:ENST00000495106.5:ENST00000495852.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	34	2	2.63247	3.60837	4.58427	0.0215745	0.0128325	0.123836	0.0926667
chr17	16066194	16066293	6733698	0	-	0.383838	(0.378,0.408]	chr17	660552	1	INTRON	INTRON	NCOR1	ENSG00000141027.22	ENST00000268712.8:ENST00000395851.5:ENST00000470782.5:ENST00000395849.6:ENST00000458113.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	34	2	2.63247	3.60837	4.58427	0.0215745	0.0128325	0.123836	0.0926667
chr17	59903596	59903696	6643867	0	+	0.38	(0.378,0.408]	chr17	648798	93	INTRON	INTRON	RPS6KB1	ENSG00000108443.14	ENST00000393021.7:ENST00000472940.5:ENST00000225577.9:ENST00000477179.5:ENST00000443572.6:ENST00000489824.1:ENST00000406116.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	34	2	2.63247	3.60837	4.58427	0.0215745	0.0128325	0.123836	0.0926667
chr8	73848670	73848770	3971958	0	-	0.4	(0.378,0.408]	chr8	364247	178	INTRON	INTRON	ENSG00000258677:UBE2W	ENSG00000258677.2:ENSG00000104343.21	ENST00000358757.5:ENST00000602593.6:ENST00000517608.5:ENST00000650817.1:ENST00000422906.6:ENST00000419880.7:ENST00000651945.1:ENST00000519277.5:ENST00000519255.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	34	2	2.63247	3.60837	4.58427	0.0215745	0.0128325	0.123836	0.0926667
chr1	93281673	93281773	508759	0	-	0.3	(0.28,0.32]	chr1	59951	82	INTRON	INTRON	CCDC18-AS1	ENSG00000223745.8	ENST00000413606.5:ENST00000457025.5:ENST00000451302.6:ENST00000668257.1:ENST00000446528.6:ENST00000415150.5:ENST00000455474.5:ENST00000447577.5:ENST00000442860.5:ENST00000414430.5:ENST00000429859.5:ENST00000424517.3:ENST00000427669.5:ENST00000661111.1	lncRNA	lncRNA	lncRNA	lncRNA	1	40	2	2.97333	3.608265	4.2432	0.0479043	0.00857834	0.153019	0.083729
chr2	27690413	27690509	718891	0	+	0.28125	(0.28,0.32]	chr2	83571	13	INTRON	INTRON	SLC4A1AP	ENSG00000163798.14	ENST00000696012.1:ENST00000696011.1:ENST00000613517.5:ENST00000696014.1:ENST00000618046.4:ENST00000326019.11:ENST00000696013.1:ENST00000696015.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	42	2	2.18975	3.608205	5.02666	0.0776042	0.0027935	0.196285	0.0488769
chr12	102110616	102110715	5399884	0	-	0.515152	(0.476,0.515]	chr12	515115	92	INTRON	INTRON	NUP37	ENSG00000075188.9	ENST00000552283.6:ENST00000251074.5:ENST00000551744.2:ENST00000551200.5:ENST00000543021.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	45	2	2.06491	3.6081700000000003	5.15143	0.0304733	0.00166579	0.143385	0.0369207
chr4	152452975	152453074	2274258	0	-	0.494949	(0.476,0.515]	chr4	221120	8	INTRON	INTRON	FBXW7	ENSG00000109670.16	ENST00000281708.10:ENST00000603548.6:ENST00000604872.6:ENST00000647166.1:ENST00000643834.1:ENST00000642901.1	protein_coding	protein_coding	protein_coding	protein_coding	2	45	2	2.06491	3.6081700000000003	5.15143	0.0304733	0.00166579	0.143385	0.0369207
chr16	11730774	11730874	6445079	0	-	0.23	[0,0.28]	chr16	620823	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	TXNDC11	ENSG00000153066.13	ENST00000283033.10:ENST00000356957.7:ENST00000575591.1:ENST00000576969.5:ENST00000571882.1:ENST00000573174.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	42	2	2.74901	3.608135	4.46726	0.0427997	0.0188843	0.148082	0.118148
chr3	141919421	141919519	1526513	0	+	0.234694	[0,0.28]	chr3	159046	25	INTRON	INTRON	ATP1B3	ENSG00000069849.11	ENST00000465172.5:ENST00000286371.8:ENST00000466678.5:ENST00000462082.1:ENST00000482635.1:ENST00000487199.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	42	2	2.74901	3.608135	4.46726	0.0427997	0.0188843	0.148082	0.118148
chr3	154309252	154309352	1843382	0	-	0.25	[0,0.28]	chr3	185451	2	SS5_PROX	SS5_PROX:INTRON	DHX36	ENSG00000174953.14	ENST00000496811.6:ENST00000308361.10:ENST00000329463.9:ENST00000481941.5	protein_coding	protein_coding	protein_coding	protein_coding	1	42	2	2.74901	3.608135	4.46726	0.0427997	0.0188843	0.148082	0.118148
chr7	149484132	149484232	3671697	0	-	0.27	[0,0.28]	chr7	340777	60	INTRON	INTRON	ZNF746	ENSG00000181220.18	ENST00000644635.1:ENST00000340622.8:ENST00000458143.7:ENST00000685153.1	protein_coding	protein_coding	protein_coding	protein_coding	1	42	2	2.74901	3.608135	4.46726	0.0427997	0.0188843	0.148082	0.118148
chr7	64549108	64549208	3537181	0	-	0.43	(0.408,0.44]	chr7	329913	43	INTRON	INTRON	ZNF680	ENSG00000173041.12	ENST00000309683.11:ENST00000476563.1:ENST00000447137.2:ENST00000473601.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	69	2	1.82275	3.607975	5.3932	0.0123226	7.81492e-4	0.097243	0.0257168
chr5	273756	273854	2312639	0	+	0.357143	(0.35,0.378]	chr5	223710	5	INTRON	INTRON	PDCD6	ENSG00000249915.9	ENST00000614778.4:ENST00000618970.4:ENST00000513582.5:ENST00000264933.9:ENST00000505221.5:ENST00000507528.5:ENST00000509581.5:ENST00000505526.1:ENST00000507473.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	47	2	2.17079	3.607955	5.04512	0.0225978	0.00393262	0.124921	0.0548259
chr9	34197466	34197566	4111454	0	+	0.3	(0.28,0.32]	chr9	374720	57	INTRON	INTRON	UBAP1	ENSG00000165006.14	ENST00000625521.2:ENST00000379186.8:ENST00000297661.9:ENST00000626262.2	protein_coding	protein_coding	protein_coding	protein_coding	4	72	2	1.86825	3.6079499999999998	5.34765	0.017708	0.00287138	0.11319	0.0474836
chr1	16254328	16254426	381631	0	-	0.346939	(0.32,0.35]	chr1	44857	2	INTRON	INTRON	FBXO42	ENSG00000037637.11	ENST00000375592.8	protein_coding	protein_coding	protein_coding	protein_coding	2	49	2	2.19668	3.607925	5.01917	0.021398	0.0055659	0.123719	0.0648867
chr7	32883323	32883422	3515539	0	-	0.40404	(0.378,0.408]	chr7	327782	30	INTRON	INTRON	KBTBD2	ENSG00000170852.12	ENST00000304056.9:ENST00000485611.5:ENST00000452926.1:ENST00000453627.1:ENST00000423022.1:ENST00000424468.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	125	2	2.56413	3.607895	4.65166	0.0024299	1.5211e-6	0.0444645	7.39558e-4
chr12	28194102	28194201	5100305	0	+	0.282828	(0.28,0.32]	chr12	481898	24	INTRON	INTRON	CCDC91	ENSG00000123106.11	ENST00000540794.5:ENST00000538586.5:ENST00000536154.5:ENST00000535520.5:ENST00000539107.5:ENST00000544649.5:ENST00000545336.5:ENST00000536442.6:ENST00000544780.5:ENST00000543534.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	42	2	2.45545	3.6078799999999998	4.76031	0.0438092	0.00656106	0.14901	0.0735539
chr2	169906963	169907063	908948	0	+	0.29	(0.28,0.32]	chr2	100276	4	INTRON	INTRON	UBR3	ENSG00000144357.18	ENST00000272793.11	protein_coding	protein_coding	protein_coding	protein_coding	1	42	2	2.45545	3.6078799999999998	4.76031	0.0438092	0.00656106	0.14901	0.0735539
chr7	77712932	77713032	3343234	0	+	0.3	(0.28,0.32]	chr7	311432	152	INTRON	INTRON	RSBN1L	ENSG00000187257.16	ENST00000334955.13:ENST00000445288.5	protein_coding	protein_coding	protein_coding	protein_coding	1	42	2	2.45545	3.6078799999999998	4.76031	0.0438092	0.00656106	0.14901	0.0735539
chr17	46336575	46336674	6785834	0	-	0.343434	(0.32,0.35]	chr17	669305	18	UTR3	UTR3:EXON_MRNA:INTRON	ARL17B	ENSG00000228696.10	ENST00000570618.5:ENST00000656849.1:ENST00000434041.6:ENST00000572991.5:ENST00000622877.4:ENST00000575698.5:ENST00000575960.5:ENST00000571246.5:ENST00000450673.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	49	2	2.13945	3.60787	5.07629	0.0254517	0.00468114	0.133676	0.0600108
chr4	75797241	75797340	1975254	0	+	0.343434	(0.32,0.35]	chr4	198010	15	INTRON	INTRON	USO1	ENSG00000138768.15	ENST00000514213.7:ENST00000264904.8	protein_coding	protein_coding	protein_coding	protein_coding	2	49	2	2.13945	3.60787	5.07629	0.0254517	0.00468114	0.133676	0.0600108
chr9	92248597	92248692	4286863	0	-	0.368421	(0.35,0.378]	chr9	394136	1	INTRON	INTRON	IARS1	ENSG00000196305.19	ENST00000375643.7:ENST00000443024.7:ENST00000447699.7:ENST00000683537.1:ENST00000684726.1:ENST00000683192.1:ENST00000683565.1:ENST00000682756.1:ENST00000684542.1:ENST00000683793.1:ENST00000683817.1:ENST00000682141.1:ENST00000682893.1:ENST00000684557.1:ENST00000498025.2:ENST00000682156.1:ENST00000683017.1:ENST00000682521.1:ENST00000627121.3:ENST00000683469.1:ENST00000683495.1:ENST00000682578.1:ENST00000682533.1:ENST00000472894.2:ENST00000684757.1:ENST00000684445.1:ENST00000683376.1:ENST00000683679.1:ENST00000683119.1:ENST00000684594.1:ENST00000684267.1:ENST00000683477.1:ENST00000684232.1:ENST00000684328.1:ENST00000467876.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	81	2	3.21456	3.6077649999999997	4.00097	0.00420814	8.64759e-5	0.0572185	0.00783027
chr16	74586088	74586188	6525122	0	-	0.37	(0.35,0.378]	chr16	631842	229	INTRON	INTRON	GLG1	ENSG00000090863.12	ENST00000205061.9:ENST00000422840.7:ENST00000447066.6:ENST00000562090.5:ENST00000567951.5:ENST00000627032.2:ENST00000565260.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	80	2	3.40851	3.60776	3.80701	0.00205747	2.34133e-4	0.0409869	0.0135358
chr15	27217357	27217457	5984617	0	+	0.51	(0.476,0.515]	chr15	569164	1902	INTRON	INTRON	GABRG3	ENSG00000182256.13	ENST00000615808.5:ENST00000555083.5	protein_coding	protein_coding	protein_coding	protein_coding	1	37	2	2.8863	3.6077250000000003	4.32915	0.0124637	0.0111679	0.0973643	0.0877435
chr16	67624591	67624689	6368243	0	+	0.5	(0.476,0.515]	chr16	611855	8	INTRON	INTRON	CTCF	ENSG00000102974.16	ENST00000646076.1:ENST00000264010.10:ENST00000401394.6:ENST00000646771.1:ENST00000644753.1:ENST00000642819.1:ENST00000645306.1:ENST00000643892.1:ENST00000645699.1:ENST00000642943.1:ENST00000645409.1:ENST00000646566.1:ENST00000644950.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	37	2	2.8863	3.6077250000000003	4.32915	0.0124637	0.0111679	0.0973643	0.0877435
chr1	40057895	40057995	79793	0	+	0.37	(0.35,0.378]	chr1	10335	4	SS5_PROX	SS5_PROX:INTRON	CAP1	ENSG00000131236.18	ENST00000372797.7:ENST00000372802.5:ENST00000449311.5:ENST00000421589.5:ENST00000414893.5:ENST00000372792.7:ENST00000372805.8:ENST00000414281.5:ENST00000420216.5:ENST00000372798.5:ENST00000340450.7:ENST00000435719.5:ENST00000427843.5:ENST00000424977.1:ENST00000417287.5:ENST00000446031.1	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	2.6498	3.60765	4.5655	0.0210137	0.0155464	0.122348	0.100909
chr2	112227117	112227216	1215052	0	-	0.353535	(0.35,0.378]	chr2	129247	103	INTRON	INTRON	ZC3H8	ENSG00000144161.14	ENST00000409573.7:ENST00000476902.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	35	2	2.6498	3.60765	4.5655	0.0210137	0.0155464	0.122348	0.100909
chr10	35518513	35518612	4426333	0	+	0.363636	(0.35,0.378]	chr10	407937	15	INTRON	INTRON	CCNY	ENSG00000108100.18	ENST00000374706.5:ENST00000493157.6:ENST00000374704.8:ENST00000265375.13:ENST00000339497.7:ENST00000492478.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	35	2	2.57049	3.6075299999999997	4.64457	0.0262669	0.012652	0.133676	0.0926667
chr10	46800562	46800662	4430863	0	+	0.37	(0.35,0.378]	chr10	408543	4	SS3_PROX	SS3_PROX:INTRON	BMS1P1	ENSG00000204177.11	ENST00000580094.5:ENST00000690946.1:ENST00000688259.1:ENST00000685496.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	1	35	2	2.57049	3.6075299999999997	4.64457	0.0262669	0.012652	0.133676	0.0926667
chr11	67227436	67227536	4813543	0	+	0.36	(0.35,0.378]	chr11	448162	77	INTRON	INTRON	KDM2A	ENSG00000173120.15	ENST00000529006.7:ENST00000398645.6:ENST00000308783.9:ENST00000526258.5:ENST00000531696.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	35	2	2.57049	3.6075299999999997	4.64457	0.0262669	0.012652	0.133676	0.0926667
chr14	45238811	45238909	5885155	0	-	0.377551	(0.35,0.378]	chr14	558418	7	INTRON	INTRON	MIS18BP1	ENSG00000129534.14	ENST00000310806.9:ENST00000454990.5:ENST00000453142.3:ENST00000627697.1:ENST00000494512.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	35	2	2.57049	3.6075299999999997	4.64457	0.0262669	0.012652	0.133676	0.0926667
chr19	44975484	44975581	7078341	0	+	0.360825	(0.35,0.378]	chr19	707884	5	INTRON	INTRON	CLPTM1	ENSG00000104853.16	ENST00000588855.5:ENST00000541297.6:ENST00000546079.5:ENST00000337392.10:ENST00000591304.1:ENST00000587537.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	35	2	2.57049	3.6075299999999997	4.64457	0.0262669	0.012652	0.133676	0.0926667
chr9	91348412	91348512	4281089	0	-	0.37	(0.35,0.378]	chr9	393807	48	INTRON	INTRON	AUH	ENSG00000148090.12	ENST00000303617.5:ENST00000375731.9:ENST00000478465.5:ENST00000475023.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	35	2	2.57049	3.6075299999999997	4.64457	0.0262669	0.012652	0.133676	0.0926667
chr15	85003034	85003134	6089142	0	+	0.33	(0.32,0.35]	chr15	579504	203	INTRON	INTRON	PDE8A	ENSG00000073417.15	ENST00000310298.8:ENST00000557957.5:ENST00000394553.6:ENST00000339708.9:ENST00000478717.5:ENST00000485596.5:ENST00000559742.5:ENST00000559086.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	115	2	3.02374	3.60746	4.19118	0.00133935	3.63425e-5	0.0335551	0.00482856
chr7	157242586	157242686	3455000	0	+	0.36	(0.35,0.378]	chr7	323002	109	INTRON	INTRON	UBE3C	ENSG00000009335.18	ENST00000348165.10:ENST00000470408.5:ENST00000494532.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	62	2	1.6599	3.60745	5.555	0.0545616	1.71389e-4	0.165292	0.0113605
chr1	21771568	21771667	396754	0	-	0.383838	(0.378,0.408]	chr1	47345	134	INTRON	INTRON	USP48	ENSG00000090686.16	ENST00000400301.5:ENST00000308271.14:ENST00000529637.5:ENST00000421625.6:ENST00000527823.5:ENST00000532737.1:ENST00000489108.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	37	2	3.22599	3.60733	3.98867	0.0507	0.00288652	0.156383	0.0494641
chr19	55238870	55238959	7213585	0	-	0.382022	(0.378,0.408]	chr19	732746	3	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	PPP6R1	ENSG00000105063.19	ENST00000412770.7:ENST00000587283.5:ENST00000586690.1:ENST00000589343.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	37	2	3.22599	3.60733	3.98867	0.0507	0.00288652	0.156383	0.0494641
chr7	23329612	23329712	3502239	0	-	0.36	(0.35,0.378]	chr7	326829	100	INTRON	INTRON	IGF2BP3	ENSG00000136231.14	ENST00000258729.8:ENST00000619562.4:ENST00000421467.6:ENST00000467592.5:ENST00000497563.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	48	2	1.90405	3.607315	5.31058	0.0482651	0.00160599	0.171852	0.0364977
chr17	42479049	42479149	6611498	0	+	0.42	(0.408,0.44]	chr17	644104	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ATP6V0A1	ENSG00000033627.17	ENST00000393829.6:ENST00000343619.9:ENST00000537728.5:ENST00000264649.10:ENST00000585525.5:ENST00000544137.5:ENST00000589727.5:ENST00000592324.1:ENST00000587375.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	160	2	3.30219	3.60725	3.91231	6.02189e-5	4.66321e-6	0.00681482	0.00145024
chr17	59136458	59136558	6802211	0	-	0.4	(0.378,0.408]	chr17	671855	47	INTRON	INTRON	SKA2	ENSG00000182628.13	ENST00000330137.12:ENST00000580541.1:ENST00000578105.1:ENST00000578519.5:ENST00000583927.1:ENST00000581068.5:ENST00000437036.6:ENST00000583380.5:ENST00000583976.1:ENST00000584089.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	50	2	2.16303	3.60697	5.05091	0.0252473	0.00118558	0.12011	0.031662
chr8	105456858	105456958	3838630	0	+	0.61	(0.57,1]	chr8	354063	52	INTRON	INTRON	ZFPM2	ENSG00000169946.14	ENST00000407775.7:ENST00000520492.5:ENST00000520027.5:ENST00000524235.5:ENST00000511341.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	37	2	2.43624	3.60677	4.7773	0.00279586	5.07088e-4	0.0469265	0.0202328
chr9	136407310	136407394	4374402	0	-	0.642857	(0.57,1]	chr9	402869	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ENTR1	ENSG00000165689.17	ENST00000357365.8:ENST00000298537.11:ENST00000371725.7:ENST00000468963.1:ENST00000371723.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	37	2	2.43624	3.60677	4.7773	0.00279586	5.07088e-4	0.0469265	0.0202328
chr7	151513906	151514006	3674866	0	-	0.34	(0.32,0.35]	chr7	341207	154	INTRON	INTRON	RHEB	ENSG00000106615.10	ENST00000262187.10:ENST00000472642.5:ENST00000478470.5:ENST00000496004.5:ENST00000470370.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	114	2	3.43629	3.60669	3.77709	5.24715e-4	1.14798e-4	0.0210958	0.00917224
chr5	66018622	66018722	2371775	0	+	0.4	(0.378,0.408]	chr5	228522	35	INTRON	INTRON	ERBIN	ENSG00000112851.15	ENST00000380943.6:ENST00000416865.6:ENST00000380935.5:ENST00000284037.10:ENST00000380938.6:ENST00000511297.5:ENST00000506030.5:ENST00000508515.1	protein_coding	protein_coding	protein_coding	protein_coding	3	56	2	2.2708	3.60665	4.9425	0.00646593	0.00452675	0.073179	0.0595107
chr19	5598092	5598192	7124098	0	-	0.39	(0.378,0.408]	chr19	716986	22	INTRON	INTRON	SAFB2	ENSG00000130254.12	ENST00000252542.9	protein_coding	protein_coding	protein_coding	protein_coding	3	102	2	3.44551	3.606625	3.76774	4.21442e-4	8.68398e-5	0.0189827	0.00783027
chr18	57560619	57560717	6980205	0	-	0.346939	(0.32,0.35]	chr18	690597	10	INTRON	INTRON	FECH	ENSG00000066926.13	ENST00000262093.11:ENST00000652755.1:ENST00000651787.1:ENST00000382873.8:ENST00000585494.5:ENST00000682485.1:ENST00000592699.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	37	2	2.84569	3.6066199999999995	4.36755	0.0300552	0.0121137	0.129138	0.0962599
chr2	95938628	95938728	1179192	0	-	0.33	(0.32,0.35]	chr2	126008	4	SS5_PROX	SS5_PROX:INTRON	ANKRD36C	ENSG00000174501.15	ENST00000295246.7:ENST00000456556.5:ENST00000534304.5:ENST00000528268.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	37	2	2.84569	3.6066199999999995	4.36755	0.0300552	0.0121137	0.129138	0.0962599
chr12	122881037	122881136	5442426	0	-	0.333333	(0.32,0.35]	chr12	520621	101	EXON_MRNA	EXON_MRNA:INTRON	VPS37B:ENSG00000280138	ENSG00000139722.7:ENSG00000280138.1	ENST00000267202.7:ENST00000535765.5:ENST00000371248.3:ENST00000623210.1	protein_coding	protein_coding	protein_coding:TEC	protein_coding:TEC	1	40	2	2.57263	3.606545	4.64046	0.0312297	0.00724767	0.13151	0.0756327
chr14	92062230	92062330	5960071	0	-	0.33	(0.32,0.35]	chr14	565911	38	UTR3	UTR3:EXON_MRNA:INTRON	ATXN3	ENSG00000066427.25	ENST00000647161.1:ENST00000393287.9:ENST00000429774.6:ENST00000545170.5:ENST00000644486.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	40	2	2.57263	3.606545	4.64046	0.0312297	0.00724767	0.13151	0.0756327
chr22	22505717	22505817	7562245	0	-	0.35	(0.32,0.35]	chr22	773569	112	INTRON	INTRON	ZNF280B	ENSG00000275004.4	ENST00000626650.3:ENST00000619852.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	40	2	2.57263	3.606545	4.64046	0.0312297	0.00724767	0.13151	0.0756327
chr5	6617357	6617449	2566615	0	-	0.326087	(0.32,0.35]	chr5	245931	1	INTRON	INTRON	NSUN2	ENSG00000037474.15	ENST00000264670.11:ENST00000504374.5:ENST00000505892.5:ENST00000506139.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	40	2	2.57263	3.606545	4.64046	0.0312297	0.00724767	0.13151	0.0756327
chr4	73218178	73218278	2160420	0	-	0.32	(0.28,0.32]	chr4	212794	403	INTRON	INTRON	ANKRD17	ENSG00000132466.20	ENST00000358602.9:ENST00000558247.5:ENST00000330838.10:ENST00000509867.6:ENST00000561029.1:ENST00000559367.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	79	2	1.40698	3.606535	5.80609	0.0778529	1.23223e-4	0.196685	0.00949625
chr7	30598495	30598595	3301463	0	+	0.54	(0.515,0.57]	chr7	306516	3	SS3_PROX	SS3_PROX:INTRON	GARS1	ENSG00000106105.15	ENST00000675051.1:ENST00000470392.2:ENST00000674643.1:ENST00000675529.1:ENST00000674807.1:ENST00000675810.1:ENST00000676088.1:ENST00000674815.1:ENST00000676403.1:ENST00000485784.2:ENST00000676210.1:ENST00000478124.6:ENST00000454308.6:ENST00000389266.8:ENST00000675693.1:ENST00000676259.1:ENST00000675651.1:ENST00000674616.1:ENST00000674737.1:ENST00000675859.1:ENST00000676140.1:ENST00000674969.1:ENST00000676164.1:ENST00000675886.1:ENST00000444666.6:ENST00000675587.1:ENST00000674851.1:ENST00000675863.1:ENST00000675025.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	156	2	3.50699	3.606485	3.70598	1.95822e-5	1.45231e-6	0.00358497	7.22593e-4
chr17	72823113	72823211	6832249	0	-	0.408163	(0.378,0.408]	chr17	675161	7	INTRON	INTRON	SLC39A11	ENSG00000133195.12	ENST00000255559.8:ENST00000542342.6:ENST00000582769.5:ENST00000581581.1:ENST00000579319.1:ENST00000583715.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	38	2	2.78946	3.606475	4.42349	0.0158859	0.00992961	0.101453	0.0877296
chr13	99287574	99287674	5525308	0	+	0.29	(0.28,0.32]	chr13	528241	426	INTRON	INTRON	UBAC2	ENSG00000134882.16	ENST00000355700.9:ENST00000403766.8:ENST00000468067.5:ENST00000473091.5:ENST00000376440.6:ENST00000494576.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	45	2	2.87382	3.6062250000000002	4.33863	0.0207276	0.014868	0.122348	0.0989021
chr15	94926939	94927039	6105904	0	+	0.38	(0.378,0.408]	chr15	581688	23	INTRON	INTRON	ENSG00000277654	ENSG00000277654.6	ENST00000618611.4:ENST00000648065.1:ENST00000618377.1:ENST00000621842.4:ENST00000615751.4:ENST00000614581.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	1	34	2	2.71183	3.606195	4.50056	0.0170789	0.015974	0.110899	0.101453
chr18	26245572	26245672	6884675	0	+	0.4	(0.378,0.408]	chr18	682426	179	INTRON	INTRON	TAF4B	ENSG00000141384.13	ENST00000269142.10:ENST00000578121.5:ENST00000418698.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	34	2	2.71183	3.606195	4.50056	0.0170789	0.015974	0.110899	0.101453
chr5	140493332	140493431	2503764	0	+	0.40404	(0.378,0.408]	chr5	239246	59	INTRON	INTRON	ANKHD1	ENSG00000131503.21	ENST00000297183.10:ENST00000360839.7:ENST00000421134.5:ENST00000246149.10:ENST00000412116.5:ENST00000506755.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	34	2	2.71183	3.606195	4.50056	0.0170789	0.015974	0.110899	0.101453
chr3	172144637	172144737	1560600	0	+	0.27	[0,0.28]	chr3	161547	107	INTRON	INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000421757.5:ENST00000469491.5:ENST00000336824.8:ENST00000423424.5:ENST00000416957.5:ENST00000478016.1:ENST00000443501.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	56	2	2.15457	3.606025	5.05748	0.0269306	0.0113653	0.135288	0.0886611
chr5	132618294	132618394	2487331	0	+	0.23	[0,0.28]	chr5	237403	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	RAD50	ENSG00000113522.14	ENST00000533482.5:ENST00000378823.8:ENST00000651249.1:ENST00000455677.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	56	2	2.15457	3.606025	5.05748	0.0269306	0.0113653	0.135288	0.0886611
chr1	47349803	47349903	97734	0	+	0.52	(0.515,0.57]	chr1	13138	153	INTRON	INTRON	CMPK1	ENSG00000162368.14	ENST00000371873.10:ENST00000371871.8:ENST00000471289.2:ENST00000450808.2:ENST00000371870.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	32	2	3.12663	3.6060049999999997	4.08538	0.0253843	0.00374498	0.12011	0.0562234
chr10	3144466	3144566	4542782	0	-	0.39	(0.378,0.408]	chr10	419386	1	SS3_PROX	SS3_PROX:INTRON	PITRM1	ENSG00000107959.17	ENST00000224949.9:ENST00000678811.1:ENST00000464395.1:ENST00000380989.6:ENST00000451104.6:ENST00000677384.1:ENST00000679309.1:ENST00000678403.1:ENST00000676719.1:ENST00000380994.6:ENST00000678855.1:ENST00000678436.1:ENST00000677817.1:ENST00000677305.1:ENST00000678986.1:ENST00000677001.1:ENST00000678987.1:ENST00000678601.1:ENST00000676953.1:ENST00000676519.1:ENST00000678050.1:ENST00000678370.1:ENST00000677922.1:ENST00000678441.1:ENST00000679134.1:ENST00000677598.1:ENST00000678539.1:ENST00000451454.5:ENST00000424714.1:ENST00000679210.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	34	2	2.54849	3.605935	4.66338	0.0273196	0.0103469	0.136494	0.0850389
chr11	61301596	61301690	4956156	0	-	0.404255	(0.378,0.408]	chr11	465664	8	EXON_MRNA	EXON_MRNA:INTRON	DDB1	ENSG00000167986.15	ENST00000301764.12:ENST00000680367.1:ENST00000681803.1:ENST00000680717.1:ENST00000679712.1:ENST00000680357.1:ENST00000680075.1:ENST00000679588.1:ENST00000680602.1:ENST00000680881.1:ENST00000681188.1:ENST00000535283.6:ENST00000680452.1:ENST00000681935.1:ENST00000680250.1:ENST00000680959.1:ENST00000681815.1:ENST00000681580.1:ENST00000680345.1:ENST00000451943.6:ENST00000545894.1:ENST00000540166.5:ENST00000538470.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	34	2	2.54849	3.605935	4.66338	0.0273196	0.0103469	0.136494	0.0850389
chr15	64689569	64689669	6205180	0	-	0.38	(0.378,0.408]	chr15	591827	4	SS3_PROX	SS3_PROX:INTRON	OAZ2	ENSG00000180304.14	ENST00000326005.10:ENST00000558194.5:ENST00000560258.6:ENST00000559753.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	34	2	2.54849	3.605935	4.66338	0.0273196	0.0103469	0.136494	0.0850389
chr2	127483274	127483374	1224295	0	-	0.4	(0.378,0.408]	chr2	130313	17	INTRON	INTRON	IWS1	ENSG00000163166.15	ENST00000412979.1:ENST00000637187.1:ENST00000295321.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	34	2	2.54849	3.605935	4.66338	0.0273196	0.0103469	0.136494	0.0850389
chr2	238078662	238078760	1051514	0	+	0.387755	(0.378,0.408]	chr2	111827	2	EXON_MRNA	EXON_MRNA:INTRON	SCLY	ENSG00000132330.18	ENST00000651534.1:ENST00000480357.5:ENST00000254663.12:ENST00000413463.6:ENST00000446202.5:ENST00000409736.6:ENST00000423324.5:ENST00000412508.6:ENST00000443532.5:ENST00000480859.5:ENST00000482031.5:ENST00000431487.5:ENST00000437134.5:ENST00000497951.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	34	2	2.54849	3.605935	4.66338	0.0273196	0.0103469	0.136494	0.0850389
chr21	9104706	9104806	7426386	0	-	0.4	(0.378,0.408]	chr21	757579	164	INTRON	INTRON	TEKT4P2	ENSG00000188681.12	ENST00000690061.1:ENST00000689141.1:ENST00000688310.1:ENST00000687537.1:ENST00000690096.1:ENST00000687888.1:ENST00000690389.1:ENST00000684989.1:ENST00000416067.6:ENST00000693307.1:ENST00000692383.1:ENST00000685666.1:ENST00000688451.1:ENST00000691190.1:ENST00000685532.1:ENST00000687488.1:ENST00000690713.1:ENST00000691834.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	1	34	2	2.54849	3.605935	4.66338	0.0273196	0.0103469	0.136494	0.0850389
chr4	152524278	152524378	2274972	0	-	0.38	(0.378,0.408]	chr4	221124	345	INTRON	INTRON	FBXW7	ENSG00000109670.16	ENST00000281708.10:ENST00000603548.6:ENST00000604872.6:ENST00000647166.1:ENST00000643834.1:ENST00000642901.1	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	2.54849	3.605935	4.66338	0.0273196	0.0103469	0.136494	0.0850389
chr5	72895361	72895458	2387938	0	+	0.402062	(0.378,0.408]	chr5	230468	13	INTRON	INTRON	TNPO1	ENSG00000083312.19	ENST00000680533.1:ENST00000337273.10:ENST00000680025.1:ENST00000523768.5:ENST00000681711.1:ENST00000679378.1:ENST00000506351.6:ENST00000605210.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	34	2	2.54849	3.605935	4.66338	0.0273196	0.0103469	0.136494	0.0850389
chr6	15360618	15360718	2824093	0	+	0.39	(0.378,0.408]	chr6	265192	457	INTRON	INTRON	JARID2	ENSG00000008083.14	ENST00000341776.7:ENST00000397311.4	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	2.54849	3.605935	4.66338	0.0273196	0.0103469	0.136494	0.0850389
chr16	16508315	16508415	6310945	0	+	0.4	(0.378,0.408]	chr16	604098	83	INTRON	INTRON	ENSG00000260126	ENSG00000260126.2	ENST00000567465.2	lncRNA	lncRNA	lncRNA	lncRNA	1	37	2	2.2259	3.6058850000000002	4.98587	0.0662381	0.00152268	0.181924	0.0360297
chr19	54105196	54105296	7098531	0	+	0.4	(0.378,0.408]	chr19	711799	2	SS3_PROX	SS3_PROX:INTRON	NDUFA3	ENSG00000170906.16	ENST00000417903.5:ENST00000419113.5:ENST00000391762.5:ENST00000485876.6:ENST00000451517.5:ENST00000471292.5:ENST00000391764.7:ENST00000391763.3:ENST00000484103.1:ENST00000303553.5:ENST00000422029.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	37	2	2.2259	3.6058850000000002	4.98587	0.0662381	0.00152268	0.181924	0.0360297
chr2	69904317	69904382	805392	0	+	0.323077	(0.32,0.35]	chr2	89898	2	CDS_STOP	CDS_STOP:CDS:UTR3:UTR5:EXON_MRNA	SNRNP27:MXD1	ENSG00000124380.11:ENSG00000059728.11	ENST00000244227.8:ENST00000409116.5:ENST00000450162.6:ENST00000435990.5:ENST00000487029.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	59	2	1.97654	3.60587	5.2352	0.0199113	0.0028268	0.120668	0.0472361
chr5	71555398	71555497	2384609	0	+	0.333333	(0.32,0.35]	chr5	230048	17	INTRON	INTRON	BDP1	ENSG00000145734.20	ENST00000358731.9:ENST00000514903.7:ENST00000525844.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	37	2	2.31405	3.605865	4.89768	0.0517107	0.00793135	0.176696	0.076155
chr19	48803160	48803258	7199417	0	-	0.479592	(0.476,0.515]	chr19	729925	25	INTRON	INTRON	BCAT2	ENSG00000105552.15	ENST00000545387.6:ENST00000316273.11:ENST00000402551.5:ENST00000593515.5:ENST00000597011.5:ENST00000599246.5:ENST00000598162.5:ENST00000595376.1:ENST00000601681.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	58	2	1.97402	3.605855	5.23769	0.0206778	5.17244e-4	0.110999	0.0203753
chr19	16832444	16832543	7027397	0	+	0.474747	(0.44,0.476]	chr19	699470	4	INTRON	INTRON	SIN3B	ENSG00000127511.10	ENST00000248054.10:ENST00000379803.5:ENST00000596802.5	protein_coding	protein_coding	protein_coding	protein_coding	3	98	2	3.31275	3.6058500000000002	3.89895	2.02261e-4	1.73222e-4	0.0129814	0.0114086
chr6	32163223	32163314	2844545	0	+	0.527473	(0.515,0.57]	chr6	268252	4	UTR3	UTR3:EXON_MRNA:INTRON	PPT2:PPT2-EGFL8	ENSG00000221988.13:ENSG00000258388.7	ENST00000361568.6:ENST00000395523.5:ENST00000428388.6:ENST00000585246.5:ENST00000375137.6:ENST00000375143.6:ENST00000324816.11:ENST00000422437.5:ENST00000453656.6:ENST00000583227.5:ENST00000479001.2:ENST00000421600.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	207	2	3.19266	3.60582	4.01898	4.94588e-6	2.89161e-7	0.00151483	2.89707e-4
chr7	116898271	116898371	3385725	0	+	0.3	(0.28,0.32]	chr7	317055	1	SS3_PROX	SS3_PROX:INTRON	CAPZA2	ENSG00000198898.15	ENST00000464223.5:ENST00000484325.1:ENST00000414148.6:ENST00000361183.8:ENST00000449080.5:ENST00000426421.5:ENST00000490693.5:ENST00000417431.5:ENST00000464669.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	105	2	2.67975	3.605805	4.53186	0.0252505	6.85465e-6	0.12011	0.00186176
chr6	140171481	140171581	2968170	0	+	0.39	(0.378,0.408]	chr6	279015	224	INTRON	INTRON	ENSG00000288714	ENSG00000288714.1	ENST00000683950.1	lncRNA	lncRNA	lncRNA	lncRNA	4	63	2	1.6165	3.6056600000000003	5.59482	0.0374185	4.23783e-4	0.155878	0.0189958
chr4	82890194	82890294	2180100	0	-	0.36	(0.35,0.378]	chr4	214409	1	SS5_PROX	SS5_PROX:INTRON	SEC31A	ENSG00000138674.17	ENST00000395310.7:ENST00000513858.5:ENST00000348405.8:ENST00000448323.5:ENST00000311785.11:ENST00000509142.5:ENST00000443462.6:ENST00000355196.6:ENST00000508502.5:ENST00000505984.5:ENST00000508479.5:ENST00000436790.6:ENST00000503058.5:ENST00000507816.5:ENST00000514326.5:ENST00000513323.5:ENST00000511975.5:ENST00000507340.5:ENST00000507867.5:ENST00000506497.5:ENST00000510310.1:ENST00000503210.5:ENST00000505434.5:ENST00000507676.5:ENST00000506495.5:ENST00000507051.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	47	2	2.2877	3.605625	4.92355	0.0155765	0.00573514	0.109411	0.0657377
chr1	745025	745125	357416	0	-	0.48	(0.476,0.515]	chr1	41161	2	SS3_PROX	SS3_PROX:INTRON	ENSG00000230021:ENSG00000228327	ENSG00000230021.10:ENSG00000228327.4	ENST00000634337.2:ENST00000635509.2:ENST00000506640.2	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene:transcribed_unprocessed_pseudogene	processed_transcript	5	135	2	2.67243	3.6055900000000003	4.53875	4.26065e-4	6.10545e-6	0.0184573	0.00185549
chr7	111364575	111364675	3622128	0	-	0.38	(0.378,0.408]	chr7	337093	4007	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	165	2	3.35787	3.605525	3.85318	2.48842e-5	1.6534e-5	0.00391907	0.00326079
chr5	105327661	105327761	2695703	0	-	0.5	(0.476,0.515]	chr5	254248	814	INTRON	INTRON	ENSG00000251574	ENSG00000251574.8	ENST00000503650.1	lncRNA	lncRNA	lncRNA	lncRNA	3	54	2	2.11679	3.6055099999999998	5.09423	0.0115627	0.00204588	0.0962115	0.04086
chr7	152271505	152271605	3679636	0	-	0.48	(0.476,0.515]	chr7	341611	59	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682916.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000684262.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	54	2	2.11679	3.6055099999999998	5.09423	0.0115627	0.00204588	0.0962115	0.04086
chr16	81463408	81463508	6405183	0	+	0.41	(0.408,0.44]	chr16	615026	175	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8	protein_coding	protein_coding	protein_coding	protein_coding	7	204	2	2.93333	3.6055	4.27767	4.01252e-5	1.05897e-6	0.00513517	6.34158e-4
chr10	74402578	74402678	4458289	0	+	0.36	(0.35,0.378]	chr10	411580	36	INTRON	INTRON	ADK	ENSG00000156110.15	ENST00000672429.1:ENST00000539909.6:ENST00000286621.7:ENST00000673352.1:ENST00000673310.1:ENST00000672920.1:ENST00000672394.1:ENST00000372734.5:ENST00000673027.1:ENST00000541550.6:ENST00000672604.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	47	2	2.10859	3.6054250000000003	5.10226	0.0272722	0.00327038	0.136494	0.0508595
chr9	83701813	83701912	4273021	0	-	0.373737	(0.35,0.378]	chr9	392981	153	INTRON	INTRON	UBQLN1	ENSG00000135018.14	ENST00000376395.9:ENST00000257468.11:ENST00000529923.1	protein_coding	protein_coding	protein_coding	protein_coding	2	47	2	2.10859	3.6054250000000003	5.10226	0.0272722	0.00327038	0.136494	0.0508595
chr2	186503353	186503442	942991	0	+	0.382022	(0.378,0.408]	chr2	103269	4	INTRON	INTRON	ZC3H15	ENSG00000065548.18	ENST00000421536.5:ENST00000337859.11:ENST00000481101.5:ENST00000468120.5:ENST00000496289.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	164	2	3.57555	3.6054199999999996	3.63529	5.54165e-5	6.11078e-6	0.00651834	0.00173354
chr1	246047656	246047756	676107	0	-	0.44	(0.408,0.44]	chr1	79713	592	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000391836.3:ENST00000464398.1:ENST00000453676.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	54	2	1.81759	3.605395	5.3932	0.0316273	7.81492e-4	0.144405	0.0257168
chr11	134209977	134210069	5055050	0	-	0.521739	(0.515,0.57]	chr11	477228	1	SS5_PROX	SS5_PROX:INTRON	NCAPD3	ENSG00000151503.14	ENST00000534548.7:ENST00000692494.1:ENST00000688672.1:ENST00000534532.7:ENST00000688263.1:ENST00000525964.7:ENST00000690149.1:ENST00000687480.1:ENST00000690743.1:ENST00000685324.1:ENST00000689205.1:ENST00000525432.2:ENST00000687155.1:ENST00000687965.1:ENST00000693663.1:ENST00000533155.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	32	2	2.52504	3.60536	4.68568	0.029342	0.00270027	0.128055	0.0479115
chr3	31557734	31557834	1391645	0	+	0.56	(0.515,0.57]	chr3	145686	237	INTRON	INTRON	STT3B	ENSG00000163527.10	ENST00000453168.5:ENST00000295770.4:ENST00000423527.5:ENST00000462235.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	32	2	2.52504	3.60536	4.68568	0.029342	0.00270027	0.128055	0.0479115
chr6	143171678	143171778	2976296	0	+	0.4	(0.378,0.408]	chr6	279149	61	INTRON	INTRON	AIG1	ENSG00000146416.19	ENST00000367601.8:ENST00000447498.5:ENST00000646199.1:ENST00000357847.9:ENST00000629020.2:ENST00000275235.8:ENST00000494282.6:ENST00000458219.1:ENST00000470265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	37	2	2.60296	3.605335	4.60771	0.0267851	0.00567576	0.123349	0.0678837
chr7	44390303	44390402	3527279	0	-	0.383838	(0.378,0.408]	chr7	328942	38	INTRON	INTRON	NUDCD3	ENSG00000015676.18	ENST00000355451.8:ENST00000460110.5:ENST00000487118.1:ENST00000475952.1:ENST00000338427.10:ENST00000493613.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	37	2	2.60296	3.605335	4.60771	0.0267851	0.00567576	0.123349	0.0678837
chr19	58248410	58248509	7106725	0	+	0.525253	(0.515,0.57]	chr19	713338	9	INTRON	INTRON	ZNF544	ENSG00000198131.15	ENST00000599227.5:ENST00000687789.1:ENST00000594384.5:ENST00000652201.1:ENST00000596825.5:ENST00000596929.5:ENST00000596677.5:ENST00000600220.5:ENST00000600044.5:ENST00000596652.5:ENST00000599953.1:ENST00000598880.5:ENST00000595981.5:ENST00000627781.2:ENST00000269829.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	88	2	2.92115	3.605195	4.28924	0.00110258	1.58313e-5	0.03038	0.00318411
chr19	37228043	37228143	7060291	0	+	0.51	(0.476,0.515]	chr19	704887	3	SS5_PROX	SS5_PROX:INTRON	ZNF383	ENSG00000188283.12	ENST00000586068.5:ENST00000590503.5:ENST00000684119.1:ENST00000589413.5:ENST00000352998.7:ENST00000588371.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	35	2	3.07422	3.60504	4.13586	0.031846	0.00506023	0.13151	0.0646039
chr2	85025597	85025696	820809	0	+	0.494949	(0.476,0.515]	chr2	91425	112	INTRON	INTRON	KCMF1	ENSG00000176407.18	ENST00000456682.1:ENST00000409785.9:ENST00000428691.5:ENST00000453448.1	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	3.07422	3.60504	4.13586	0.031846	0.00506023	0.13151	0.0646039
chr7	106267633	106267729	3608423	0	-	0.510417	(0.476,0.515]	chr7	336505	10	EXON_MRNA	EXON_MRNA:INTRON	NAMPT	ENSG00000105835.13	ENST00000681491.1:ENST00000222553.8:ENST00000681494.1:ENST00000680708.1:ENST00000681653.1:ENST00000681391.1:ENST00000680991.1:ENST00000680077.1:ENST00000681456.1:ENST00000680675.1:ENST00000681550.1:ENST00000680864.1:ENST00000680584.1:ENST00000680669.1:ENST00000424768.2:ENST00000681255.1:ENST00000679873.1:ENST00000679643.1:ENST00000681878.1:ENST00000489732.2:ENST00000679951.1:ENST00000680823.1:ENST00000680468.1:ENST00000679894.1:ENST00000679461.1:ENST00000681372.1:ENST00000681936.1:ENST00000680152.1:ENST00000681887.1:ENST00000680129.1:ENST00000680786.1:ENST00000681223.1:ENST00000679717.1:ENST00000680516.1:ENST00000484527.6:ENST00000354289.9:ENST00000491027.6:ENST00000681297.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	35	2	3.07422	3.60504	4.13586	0.031846	0.00506023	0.13151	0.0646039
chr7	127915092	127915192	3405048	0	+	0.48	(0.476,0.515]	chr7	318161	99	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000465900.5:ENST00000486037.1:ENST00000484767.5:ENST00000492840.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	35	2	3.07422	3.60504	4.13586	0.031846	0.00506023	0.13151	0.0646039
chr22	47783060	47783160	7540887	0	+	0.58	(0.57,1]	chr22	770756	42	INTRON	INTRON	ENSG00000224271	ENSG00000224271.7	ENST00000664761.1:ENST00000650683.1:ENST00000651536.1:ENST00000652656.1:ENST00000652072.1:ENST00000651445.1:ENST00000423737.5:ENST00000650660.1:ENST00000651056.1:ENST00000652611.1:ENST00000652399.1:ENST00000652123.1:ENST00000652505.1:ENST00000652030.2:ENST00000651403.1:ENST00000652228.1:ENST00000651124.1:ENST00000650972.1:ENST00000651637.1:ENST00000651003.1:ENST00000651948.2:ENST00000651293.1:ENST00000651939.1:ENST00000650787.1:ENST00000651517.1:ENST00000651662.1:ENST00000651638.1:ENST00000670853.1:ENST00000652080.1:ENST00000651294.1:ENST00000652164.1:ENST00000651538.1:ENST00000651033.1:ENST00000651584.1	lncRNA	lncRNA	lncRNA	lncRNA	3	35	2	2.07956	3.604885	5.13021	0.013114	1.21664e-4	0.0998629	0.00992813
chr16	2080938	2081032	6277271	0	+	0.553191	(0.515,0.57]	chr16	600109	7	EXON_MRNA	EXON_MRNA:INTRON	TSC2	ENSG00000103197.18	ENST00000643946.1:ENST00000643088.1:ENST00000382538.10:ENST00000219476.9:ENST00000642936.1:ENST00000401874.7:ENST00000644335.1:ENST00000646388.1:ENST00000439673.6:ENST00000350773.9:ENST00000439117.6:ENST00000644329.1:ENST00000642797.1:ENST00000644043.1:ENST00000642561.1:ENST00000568454.6:ENST00000644399.1:ENST00000646634.1:ENST00000642365.1:ENST00000645024.1:ENST00000497886.5:ENST00000647042.1:ENST00000644722.1:ENST00000646674.1:ENST00000647180.1:ENST00000643426.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	32	2	2.23241	3.604815	4.97722	0.0581268	0.00168681	0.188651	0.0370386
chr16	89530222	89530314	6420571	0	+	0.543478	(0.515,0.57]	chr16	616241	8	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	SPG7	ENSG00000197912.16	ENST00000647079.1:ENST00000646303.1:ENST00000643649.1:ENST00000643307.1:ENST00000566371.6:ENST00000644498.1:ENST00000645897.1:ENST00000643668.1:ENST00000644225.1:ENST00000645818.2:ENST00000645977.1:ENST00000645063.1:ENST00000646263.1:ENST00000643724.1:ENST00000644781.1:ENST00000644901.1:ENST00000645042.1:ENST00000646531.1:ENST00000646930.1:ENST00000642436.1:ENST00000644210.1:ENST00000564047.2:ENST00000646589.1:ENST00000268704.7:ENST00000646826.1:ENST00000646716.1:ENST00000643345.1:ENST00000341316.6:ENST00000645533.1:ENST00000646958.1:ENST00000642371.1:ENST00000643105.1:ENST00000645354.1:ENST00000642334.1:ENST00000647227.1:ENST00000646445.1:ENST00000564409.2:ENST00000643954.1:ENST00000646399.1:ENST00000644671.1:ENST00000643178.1:ENST00000644748.1:ENST00000643496.1:ENST00000647032.1:ENST00000644751.1:ENST00000642427.1:ENST00000643370.1:ENST00000645886.1:ENST00000646454.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	32	2	2.23241	3.604815	4.97722	0.0581268	0.00168681	0.188651	0.0370386
chr17	82134430	82134518	6851640	0	-	0.556818	(0.515,0.57]	chr17	678971	2	SS3_PROX	SS3_PROX:INTRON	CCDC57	ENSG00000176155.21	ENST00000694881.1:ENST00000389641.9:ENST00000694882.1:ENST00000665763.1:ENST00000578910.2:ENST00000419322.6:ENST00000392346.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	32	2	2.23241	3.604815	4.97722	0.0581268	0.00168681	0.188651	0.0370386
chr1	51458633	51458733	453740	0	-	0.58	(0.57,1]	chr1	54396	12	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:INTRON	EPS15	ENSG00000085832.17	ENST00000371733.8:ENST00000371730.6:ENST00000371727.5:ENST00000464478.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	41	2	2.00566	3.6048100000000005	5.20396	0.00889324	5.65393e-5	0.0798039	0.00613846
chr3	5166010	5166109	1354013	0	+	0.414141	(0.408,0.44]	chr3	142361	371	INTRON	INTRON	ARL8B	ENSG00000134108.14	ENST00000429403.5:ENST00000256496.8:ENST00000455168.5:ENST00000444332.1:ENST00000419534.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	35	2	3.08738	3.6046250000000004	4.12187	0.0354689	0.00478231	0.137535	0.0636201
chr20	33400730	33400828	7328490	0	-	0.591837	(0.57,1]	chr20	746303	33	INTRON	INTRON	CDK5RAP1	ENSG00000101391.21	ENST00000339269.5:ENST00000357886.8:ENST00000346416.7:ENST00000473997.5:ENST00000482967.5:ENST00000481964.5:ENST00000496381.5:ENST00000460043.5:ENST00000471264.5:ENST00000477105.5:ENST00000461356.5:ENST00000488723.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	64	2	2.96471	3.60459	4.24447	1.58729e-4	7.02904e-6	0.0108333	0.00198457
chr12	118334835	118334935	5429910	0	-	0.52	(0.515,0.57]	chr12	518768	373	INTRON	INTRON	TAOK3	ENSG00000135090.14	ENST00000392533.8:ENST00000419821.6:ENST00000541186.5:ENST00000541878.5:ENST00000542902.5:ENST00000542532.5:ENST00000541786.5:ENST00000539872.5:ENST00000542692.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	43	2	2.21273	3.60454	4.99635	0.0196151	8.06602e-4	0.109486	0.0258804
chr19	16077856	16077956	7025980	0	+	0.45	(0.44,0.476]	chr19	699175	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	TPM4	ENSG00000167460.17	ENST00000646974.2:ENST00000586499.6:ENST00000647464.2:ENST00000668959.1:ENST00000590180.3:ENST00000655004.1:ENST00000642789.1:ENST00000653979.1:ENST00000645471.1:ENST00000659595.1:ENST00000647037.1:ENST00000587201.6:ENST00000643579.2:ENST00000586193.6:ENST00000643494.1:ENST00000670382.1:ENST00000300933.9:ENST00000646575.1:ENST00000586833.7:ENST00000642221.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	175	2	2.47133	3.604525	4.73772	2.17467e-4	1.97834e-6	0.0129301	9.66568e-4
chr3	141991671	141991769	1833856	0	-	0.561224	(0.515,0.57]	chr3	184313	18	INTRON	INTRON	TFDP2	ENSG00000114126.18	ENST00000489671.6:ENST00000499676.5:ENST00000486111.5:ENST00000477292.5:ENST00000495310.5:ENST00000467072.5:ENST00000487734.5:ENST00000479040.5:ENST00000467667.5:ENST00000478006.5:ENST00000497579.5:ENST00000492919.1:ENST00000464782.5:ENST00000488107.6:ENST00000494656.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	64	2	3.58064	3.604425	3.62821	6.54693e-4	4.12866e-4	0.0233335	0.0181365
chr21	46502383	46502482	7422939	0	+	0.373737	(0.35,0.378]	chr21	756991	32	INTRON	INTRON	DIP2A	ENSG00000160305.18	ENST00000417564.3:ENST00000651436.1:ENST00000400274.5:ENST00000457905.7:ENST00000466639.5:ENST00000435722.7	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	2.24535	3.6043250000000002	4.9633	0.0647516	0.00198929	0.179192	0.0411469
chr9	33874934	33875034	4110804	0	+	0.36	(0.35,0.378]	chr9	374688	64	INTRON	INTRON	UBE2R2	ENSG00000107341.5	ENST00000263228.4	protein_coding	protein_coding	protein_coding	protein_coding	2	80	2	3.54684	3.6041749999999997	3.66151	0.00119142	4.717e-4	0.0315806	0.0196294
chr1	65302755	65302855	136021	0	+	0.61	(0.57,1]	chr1	15346	375	INTRON	INTRON	DNAJC6	ENSG00000116675.16	ENST00000463018.5:ENST00000494710.6:ENST00000263441.11:ENST00000395325.7:ENST00000483402.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	23	2	2.53383	3.60413	4.67443	0.02547	8.07515e-4	0.12011	0.0258804
chr10	17444566	17444666	4568918	0	-	0.58	(0.57,1]	chr10	421387	536	INTRON	INTRON	ST8SIA6	ENSG00000148488.17	ENST00000377602.5:ENST00000648997.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	23	2	2.53383	3.60413	4.67443	0.02547	8.07515e-4	0.12011	0.0258804
chr4	147254	147354	1905873	0	+	0.41	(0.408,0.44]	chr4	191032	154	INTRON	INTRON	ZNF718	ENSG00000250312.8	ENST00000642529.1:ENST00000510175.6:ENST00000609714.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	36	2	3.20437	3.60411	4.00385	0.0454568	0.00306596	0.149888	0.0509893
chr22	19966718	19966818	7477664	0	+	0.56	(0.515,0.57]	chr22	762606	1	SS5_ADJ	SS5_ADJ:SS3_PROX:SS5_PROX:INTRON	COMT	ENSG00000093010.15	ENST00000676678.1:ENST00000361682.11:ENST00000403710.5:ENST00000407537.5:ENST00000678868.1:ENST00000678769.1:ENST00000428707.2:ENST00000412786.5:ENST00000207636.9:ENST00000406520.7:ENST00000678255.1:ENST00000449653.5:ENST00000677397.1:ENST00000677675.1:ENST00000678945.1:ENST00000677564.1:ENST00000677470.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	44	2	2.43783	3.603835	4.76984	0.00916404	0.00198034	0.0812949	0.0411469
chr3	195688293	195688388	1593750	0	+	0.536842	(0.515,0.57]	chr3	165086	6	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MUC20-OT1	ENSG00000242086.8	ENST00000429897.5:ENST00000600527.5:ENST00000626089.2:ENST00000451982.6:ENST00000414625.6:ENST00000628917.2:ENST00000625358.2:ENST00000602127.5:ENST00000625882.2:ENST00000627502.2:ENST00000597034.5:ENST00000629823.2:ENST00000630243.2:ENST00000627718.2:ENST00000631366.2:ENST00000630170.2:ENST00000626156.1:ENST00000626569.2:ENST00000631189.2:ENST00000599448.5:ENST00000597482.5:ENST00000598992.5:ENST00000629990.1:ENST00000615493.4:ENST00000420851.6	lncRNA	lncRNA	lncRNA	lncRNA	2	44	2	2.43783	3.603835	4.76984	0.00916404	0.00198034	0.0812949	0.0411469
chr15	74802708	74802806	6063440	0	+	0.673469	(0.57,1]	chr15	577363	3	UTR3	UTR3:EXON_MRNA	CSK	ENSG00000103653.17	ENST00000220003.14:ENST00000439220.6:ENST00000567571.5	protein_coding	protein_coding	protein_coding	protein_coding	1	23	2	2.89463	3.6037	4.31277	0.00788262	0.00346264	0.076155	0.0539802
chr19	19334702	19334802	7034876	0	+	0.58	(0.57,1]	chr19	701332	1	SS5_PROX	SS5_PROX:INTRON	MAU2	ENSG00000129933.21	ENST00000262815.13:ENST00000609122.5:ENST00000586189.7:ENST00000592069.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	23	2	2.89463	3.6037	4.31277	0.00788262	0.00346264	0.076155	0.0539802
chr16	90155339	90155438	6424429	0	+	0.393939	(0.378,0.408]	chr16	617209	175	INTRON	INTRON	FAM157C	ENSG00000260528.6	ENST00000568070.1	lncRNA	lncRNA	lncRNA	lncRNA	1	35	2	2.9917	3.603665	4.21563	0.0315429	0.0068789	0.13151	0.0749442
chr2	235979118	235979218	1046206	0	+	0.4	(0.378,0.408]	chr2	111314	101	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000336665.9:ENST00000635100.1:ENST00000409538.5:ENST00000614409.4:ENST00000428334.6:ENST00000448025.5:ENST00000418654.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	35	2	2.9917	3.603665	4.21563	0.0315429	0.0068789	0.13151	0.0749442
chr3	197253258	197253358	1903056	0	-	0.38	(0.378,0.408]	chr3	190659	270	INTRON	INTRON	DLG1	ENSG00000075711.21	ENST00000667157.1:ENST00000346964.6:ENST00000663148.1:ENST00000655488.1:ENST00000357674.9:ENST00000671185.1:ENST00000658701.1:ENST00000667104.1:ENST00000661336.1:ENST00000669565.1:ENST00000670455.1:ENST00000656087.1:ENST00000670366.1:ENST00000661453.1:ENST00000665728.1:ENST00000664564.1:ENST00000660432.1:ENST00000660898.1:ENST00000657381.1:ENST00000659221.1:ENST00000654737.1:ENST00000669332.1:ENST00000659716.1:ENST00000664991.1:ENST00000419354.5:ENST00000661440.1:ENST00000667971.1:ENST00000670935.1:ENST00000666007.1:ENST00000661229.1:ENST00000661013.1:ENST00000436682.6:ENST00000662727.1:ENST00000422288.6:ENST00000448528.6:ENST00000656944.1:ENST00000392382.6:ENST00000450955.5:ENST00000658155.1:ENST00000669714.1:ENST00000654733.1:ENST00000419227.5:ENST00000392381.7:ENST00000471733.5:ENST00000419553.6:ENST00000661808.1:ENST00000453607.5:ENST00000456699.6:ENST00000392380.6:ENST00000485409.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	35	2	2.9917	3.603665	4.21563	0.0315429	0.0068789	0.13151	0.0749442
chr6	135339982	135340082	3226551	0	-	0.38	(0.378,0.408]	chr6	299946	151	INTRON	INTRON	AHI1	ENSG00000135541.22	ENST00000681022.1:ENST00000681841.1:ENST00000680965.1:ENST00000681522.1:ENST00000681365.1:ENST00000681332.1:ENST00000680826.1:ENST00000679711.1:ENST00000527681.2:ENST00000367800.8:ENST00000265602.11:ENST00000681718.1:ENST00000679672.1:ENST00000681828.1:ENST00000679668.1:ENST00000680840.1:ENST00000457866.6:ENST00000679925.1:ENST00000680561.1:ENST00000679742.1:ENST00000681860.1:ENST00000680119.1:ENST00000680337.1:ENST00000681340.1:ENST00000679589.1:ENST00000679890.1:ENST00000679434.1:ENST00000475846.6:ENST00000679943.1:ENST00000681057.1:ENST00000681301.1:ENST00000681488.1:ENST00000679450.1:ENST00000681756.1:ENST00000681670.1:ENST00000679476.1:ENST00000679622.1:ENST00000367799.7:ENST00000680656.1:ENST00000680278.1:ENST00000680184.1:ENST00000531788.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	35	2	2.9917	3.603665	4.21563	0.0315429	0.0068789	0.13151	0.0749442
chr1	171496102	171496202	253320	0	+	0.46	(0.44,0.476]	chr1	30096	100	INTRON	INTRON	PRRC2C	ENSG00000117523.18	ENST00000647382.2:ENST00000367742.7:ENST00000476522.5:ENST00000338920.8:ENST00000467601.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	36	2	2.20949	3.603655	4.99782	0.0672585	0.0013223	0.183051	0.0333932
chr11	87282230	87282329	4845260	0	+	0.414141	(0.408,0.44]	chr11	451872	49	INTRON	INTRON	TMEM135	ENSG00000166575.17	ENST00000340353.11:ENST00000305494.6:ENST00000532959.5	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	2.27698	3.60361	4.93024	0.0583528	0.00170369	0.167723	0.0381936
chr8	116663878	116663978	4033306	0	-	0.43	(0.408,0.44]	chr8	368046	45	INTRON	INTRON	EIF3H	ENSG00000147677.12	ENST00000521861.6:ENST00000276682.8:ENST00000518949.5:ENST00000518995.5:ENST00000522800.5:ENST00000518034.5:ENST00000517974.1:ENST00000522453.1:ENST00000519046.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	36	2	2.27698	3.60361	4.93024	0.0583528	0.00170369	0.167723	0.0381936
chrX	15689158	15689258	7624361	0	+	0.44	(0.408,0.44]	chrX	780683	3	SS5_PROX	SS5_PROX:INTRON	CA5BP1:CA5B	ENSG00000186312.10:ENSG00000169239.13	ENST00000380336.5:ENST00000448692.5:ENST00000380334.6:ENST00000380333.5:ENST00000380331.5:ENST00000435806.2:ENST00000498004.5	protein_coding	protein_coding	protein_coding:transcribed_unprocessed_pseudogene	protein_coding:processed_transcript:transcribed_unprocessed_pseudogene	1	36	2	2.27698	3.60361	4.93024	0.0583528	0.00170369	0.167723	0.0381936
chr3	25744430	25744530	1642446	0	-	0.45	(0.44,0.476]	chr3	168658	36	INTRON	INTRON	NGLY1	ENSG00000151092.18	ENST00000280700.10:ENST00000428257.5:ENST00000675217.1:ENST00000676225.1:ENST00000493324.5:ENST00000396649.7:ENST00000675178.1:ENST00000675680.1:ENST00000308710.9:ENST00000280699.13:ENST00000674841.1:ENST00000675234.1:ENST00000463611.2:ENST00000417874.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	63	2	1.43625	3.60343	5.77061	0.063142	1.44264e-4	0.197183	0.0109794
chr14	23076948	23077048	5842794	0	-	0.39	(0.378,0.408]	chr14	555624	4	SS3_PROX	SS3_PROX:INTRON	ACIN1	ENSG00000100813.15	ENST00000605057.6:ENST00000262710.5:ENST00000457657.5:ENST00000555053.5:ENST00000555352.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	77	2	3.23708	3.603425	3.96977	0.00365053	9.19167e-5	0.0535094	0.00801007
chr3	152372490	152372590	1536026	0	+	0.46	(0.44,0.476]	chr3	160003	369	INTRON	INTRON	MBNL1	ENSG00000152601.18	ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000495875.6:ENST00000324210.10:ENST00000493459.5:ENST00000459747.1:ENST00000460591.5:ENST00000545754.5:ENST00000357472.7:ENST00000324196.9:ENST00000498502.5:ENST00000463374.5:ENST00000485910.5:ENST00000465907.6:ENST00000492948.5:ENST00000485509.5:ENST00000464596.5	protein_coding	protein_coding	protein_coding	protein_coding	7	163	2	2.74903	3.6034249999999997	4.45782	6.57539e-5	1.04976e-5	0.00670317	0.00253642
chr7	75524206	75524306	3559112	0	-	0.36	(0.35,0.378]	chr7	331602	76	INTRON	INTRON	PMS2P3	ENSG00000127957.19	ENST00000693762.1:ENST00000394921.8:ENST00000430602.5:ENST00000418756.5:ENST00000437568.6:ENST00000533167.5:ENST00000691440.1:ENST00000422064.1:ENST00000438326.2	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript	1	35	2	2.72498	3.6034100000000002	4.48184	0.0191702	0.0168499	0.11068	0.108861
chr9	99152596	99152695	4175922	0	+	0.353535	(0.35,0.378]	chr9	380709	34	UTR3	UTR3:EXON_MRNA	TGFBR1	ENSG00000106799.13	ENST00000374990.6:ENST00000374994.9:ENST00000552516.5	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	2.72498	3.6034100000000002	4.48184	0.0191702	0.0168499	0.11068	0.108861
chr12	104317356	104317452	5210319	0	+	0.239583	[0,0.28]	chr12	493238	11	INTRON	INTRON	TXNRD1	ENSG00000198431.17	ENST00000525566.6:ENST00000503506.6:ENST00000526691.5:ENST00000526390.5:ENST00000529546.5:ENST00000529751.1:ENST00000526580.5:ENST00000524698.5:ENST00000527688.5:ENST00000527335.5:ENST00000526950.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	107	2	3.0836	3.60332	4.12304	0.00940284	9.55979e-5	0.0817766	0.00822576
chr7	149552513	149552606	3671899	0	-	0.333333	(0.32,0.35]	chr7	340817	3	SS5_PROX	SS5_PROX:INTRON	ZNF767P	ENSG00000133624.14	ENST00000463567.5:ENST00000472212.5:ENST00000684939.1:ENST00000690388.1:ENST00000486492.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	2	51	2	2.58753	3.6032100000000002	4.61889	0.0166646	0.00560122	0.102621	0.0678837
chr10	5781941	5782041	4544600	0	-	0.44	(0.408,0.44]	chr10	419772	76	INTRON	INTRON	GDI2	ENSG00000057608.17	ENST00000380191.9:ENST00000447751.5:ENST00000380181.7:ENST00000456041.5	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	2.58624	3.603165	4.62009	0.0273686	0.00504155	0.123904	0.0646039
chr17	49676607	49676699	6793484	0	-	0.413043	(0.408,0.44]	chr17	670321	2	INTRON	INTRON	SPOP	ENSG00000121067.19	ENST00000393328.6:ENST00000504102.6:ENST00000347630.6:ENST00000665825.1:ENST00000514121.6:ENST00000509079.6:ENST00000513080.6:ENST00000505581.5:ENST00000506399.5:ENST00000507970.5:ENST00000515508.6:ENST00000504212.5:ENST00000508805.5:ENST00000451526.6:ENST00000502385.1:ENST00000509765.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	36	2	2.58624	3.603165	4.62009	0.0273686	0.00504155	0.123904	0.0646039
chr2	235819119	235819219	1044601	0	+	0.42	(0.408,0.44]	chr2	111284	114	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1:ENST00000409538.5:ENST00000614409.4:ENST00000619456.4:ENST00000428334.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	36	2	2.58624	3.603165	4.62009	0.0273686	0.00504155	0.123904	0.0646039
chr3	128764630	128764730	1497595	0	+	0.42	(0.408,0.44]	chr3	156330	379	INTRON	INTRON	RAB7A	ENSG00000075785.14	ENST00000676214.1:ENST00000675864.1:ENST00000675712.1:ENST00000676425.1:ENST00000490093.6:ENST00000675342.1:ENST00000265062.8:ENST00000674748.1:ENST00000493186.6:ENST00000482525.5:ENST00000491681.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	36	2	2.58624	3.603165	4.62009	0.0273686	0.00504155	0.123904	0.0646039
chr9	137679800	137679899	4224092	0	+	0.424242	(0.408,0.44]	chr9	388198	29	INTRON	INTRON	EHMT1	ENSG00000181090.21	ENST00000462484.5:ENST00000371394.6:ENST00000630754.2:ENST00000460843.6:ENST00000626216.2:ENST00000629335.2:ENST00000637335.1:ENST00000636376.1:ENST00000637655.1:ENST00000636027.1:ENST00000492232.5:ENST00000460486.3:ENST00000636081.1:ENST00000637161.1:ENST00000629417.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	36	2	2.58624	3.603165	4.62009	0.0273686	0.00504155	0.123904	0.0646039
chr21	31723392	31723491	7437744	0	-	0.40404	(0.378,0.408]	chr21	758689	167	INTRON	INTRON	SCAF4	ENSG00000156304.15	ENST00000286835.12:ENST00000399804.5:ENST00000434667.3:ENST00000485790.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	77	2	3.56208	3.603135	3.64419	7.25777e-4	6.94246e-4	0.0247646	0.0240761
chr5	177148100	177148200	2553843	0	+	0.47	(0.44,0.476]	chr5	243927	108	INTRON	INTRON	NSD1	ENSG00000165671.22	ENST00000508896.6:ENST00000689549.1:ENST00000354179.9:ENST00000686993.1:ENST00000689326.1:ENST00000439151.7:ENST00000510954.6:ENST00000689345.1:ENST00000347982.9:ENST00000687453.1:ENST00000685206.1:ENST00000638627.3:ENST00000644863.2:ENST00000688613.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	135	2	2.71021	3.60307	4.49593	3.42549e-4	8.42365e-6	0.0164987	0.00221633
chr17	46112676	46112776	6784061	0	-	0.36	(0.35,0.378]	chr17	669208	176	INTRON	INTRON	KANSL1	ENSG00000120071.15	ENST00000574590.6:ENST00000572904.6:ENST00000432791.7:ENST00000575318.6:ENST00000638275.1:ENST00000262419.10:ENST00000648792.1:ENST00000639531.1:ENST00000639150.1:ENST00000639853.1:ENST00000571698.2:ENST00000639375.1:ENST00000577114.2:ENST00000638269.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	35	2	2.48657	3.6030499999999996	4.71953	0.032907	0.0103314	0.145164	0.0850389
chr2	127742650	127742750	1225189	0	-	0.37	(0.35,0.378]	chr2	130486	42	INTRON	INTRON	WDR33	ENSG00000136709.12	ENST00000322313.9:ENST00000436787.5:ENST00000393006.5	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	2.48657	3.6030499999999996	4.71953	0.032907	0.0103314	0.145164	0.0850389
chr2	177317114	177317214	1276384	0	-	0.37	(0.35,0.378]	chr2	134747	22	INTRON	INTRON	NFE2L2:ENSG00000213963	ENSG00000116044.16:ENSG00000213963.6	ENST00000464747.5:ENST00000397057.6:ENST00000456746.5:ENST00000430416.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	1	35	2	2.48657	3.6030499999999996	4.71953	0.032907	0.0103314	0.145164	0.0850389
chr12	112370567	112370667	5417636	0	-	0.22	[0,0.28]	chr12	517670	505	INTRON	INTRON	HECTD4	ENSG00000173064.14	ENST00000550722.5:ENST00000377560.9:ENST00000682272.1:ENST00000550724.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	44	2	3.00498	3.60302	4.20106	0.0695895	0.00876063	0.184298	0.0846118
chr21	39217851	39217951	7464553	0	-	0.28	[0,0.28]	chr21	760417	3	SS5_PROX	SS5_PROX:INTRON	BRWD1	ENSG00000185658.14	ENST00000333229.6:ENST00000342449.8:ENST00000446924.5:ENST00000380800.7:ENST00000424441.1:ENST00000473813.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	44	2	3.00498	3.60302	4.20106	0.0695895	0.00876063	0.184298	0.0846118
chr3	33659870	33659969	1653419	0	-	0.272727	[0,0.28]	chr3	169652	3	INTRON	INTRON	CLASP2	ENSG00000163539.18	ENST00000399362.8:ENST00000682230.1:ENST00000468888.6:ENST00000359576.9	protein_coding	protein_coding	protein_coding	protein_coding	1	44	2	3.00498	3.60302	4.20106	0.0695895	0.00876063	0.184298	0.0846118
chr8	67089126	67089225	3776878	0	+	0.181818	[0,0.28]	chr8	350279	19	INTRON	INTRON	CSPP1	ENSG00000104218.16	ENST00000676113.1:ENST00000675306.2:ENST00000678156.1:ENST00000262210.11:ENST00000678017.1:ENST00000675869.1:ENST00000678542.1:ENST00000677619.1:ENST00000676605.1:ENST00000676471.1:ENST00000677256.1:ENST00000676847.1:ENST00000677009.1:ENST00000675820.1:ENST00000676317.1:ENST00000677592.1:ENST00000676573.1:ENST00000678318.1:ENST00000677473.1:ENST00000674993.1:ENST00000678553.1:ENST00000678927.1:ENST00000678204.1:ENST00000679226.1:ENST00000676882.1:ENST00000675955.1:ENST00000678728.1:ENST00000677430.1:ENST00000677455.1:ENST00000678616.1:ENST00000678362.1:ENST00000679112.1:ENST00000678645.1:ENST00000676567.1:ENST00000677845.1:ENST00000519701.5:ENST00000519163.6:ENST00000676858.1:ENST00000678747.1:ENST00000678821.1:ENST00000678744.1:ENST00000519668.1:ENST00000677276.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	44	2	3.00498	3.60302	4.20106	0.0695895	0.00876063	0.184298	0.0846118
chr2	151450908	151451006	893635	0	+	0.326531	(0.32,0.35]	chr2	98976	40	INTRON	INTRON	RIF1	ENSG00000080345.18	ENST00000453091.6:ENST00000428287.6:ENST00000444746.7:ENST00000243326.9:ENST00000414861.6:ENST00000430328.6	protein_coding	protein_coding	protein_coding	protein_coding	3	60	2	1.61669	3.60296	5.58923	0.0578816	8.12357e-4	0.188651	0.0263656
chr16	21862000	21862099	6461861	0	-	0.414141	(0.408,0.44]	chr16	623459	39	INTRON	INTRON	NPIPB4	ENSG00000185864.18	ENST00000539318.5:ENST00000536041.5:ENST00000543449.1:ENST00000541674.5:ENST00000544693.5:ENST00000538859.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	183	2	3.14483	3.6029299999999997	4.06103	4.92125e-5	1.70529e-6	0.00608708	7.89255e-4
chr4	912894	912964	2094099	0	-	0.542857	(0.515,0.57]	chr4	206980	1	SS3_PROX	SS3_PROX:INTRON	GAK	ENSG00000178950.18	ENST00000314167.9:ENST00000511163.5:ENST00000505819.5:ENST00000507580.5:ENST00000502656.5:ENST00000512325.3:ENST00000510022.5:ENST00000511229.5:ENST00000511983.5:ENST00000507124.1:ENST00000628912.1:ENST00000513935.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	32	2	2.43589	3.6028650000000004	4.76984	0.0370871	0.00198034	0.139194	0.0411469
chr6	106212471	106212570	3177024	0	-	0.525253	(0.515,0.57]	chr6	296161	100	INTRON	INTRON	ATG5	ENSG00000057663.16	ENST00000636437.1:ENST00000636335.1:ENST00000369070.5:ENST00000369076.8:ENST00000635758.2:ENST00000360666.6:ENST00000343245.7:ENST00000646025.1:ENST00000613993.1:ENST00000476518.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	32	2	2.43589	3.6028650000000004	4.76984	0.0370871	0.00198034	0.139194	0.0411469
chr1	12444160	12444260	30451	0	+	0.28	[0,0.28]	chr1	3762	270	INTRON	INTRON	VPS13D	ENSG00000048707.15	ENST00000620676.6:ENST00000613099.4:ENST00000011700.10:ENST00000646411.1:ENST00000543710.5:ENST00000645371.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	46	2	2.49527	3.6027199999999997	4.71017	0.0436497	0.0114708	0.14882	0.0956037
chr1	167727632	167727731	247821	0	+	0.363636	(0.35,0.378]	chr1	29490	50	INTRON	INTRON	MPZL1	ENSG00000197965.12	ENST00000464954.1:ENST00000359523.7:ENST00000448405.5:ENST00000392121.7:ENST00000465787.5:ENST00000474859.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	58	2	2.28182	3.602685	4.92355	0.00637232	0.00573514	0.0724821	0.0657377
chr19	29943362	29943462	7047564	0	+	0.32	(0.28,0.32]	chr19	702657	3	INTRON	INTRON	URI1	ENSG00000105176.18	ENST00000360605.8:ENST00000570564.5:ENST00000574233.5:ENST00000392271.6:ENST00000574110.5:ENST00000574666.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	62	2	1.85772	3.602685	5.34765	0.0300199	0.00287138	0.142135	0.0474836
chr17	59647766	59647859	6641844	0	+	0.451613	(0.44,0.476]	chr17	648538	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CLTC	ENSG00000141367.12	ENST00000621829.4:ENST00000393043.5:ENST00000269122.8:ENST00000579456.5:ENST00000584313.5:ENST00000585198.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	46	2	2.59888	3.6026749999999996	4.60647	0.0102339	0.00487719	0.0850389	0.0640618
chr7	152331242	152331341	3680243	0	-	0.474747	(0.44,0.476]	chr7	341647	1	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000682301.1:ENST00000452749.2:ENST00000680867.1:ENST00000683800.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	46	2	2.59888	3.6026749999999996	4.60647	0.0102339	0.00487719	0.0850389	0.0640618
chr1	11029286	11029386	24737	0	+	0.52	(0.515,0.57]	chr1	2616	2	SS3_PROX	SS3_PROX:INTRON	TARDBP	ENSG00000120948.19	ENST00000614757.4:ENST00000611136.4:ENST00000612542.1:ENST00000622108.1:ENST00000620028.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	32	2	2.60899	3.602645	4.5963	0.0232669	0.00370287	0.118148	0.0561162
chr1	145929091	145929191	210997	0	+	0.55	(0.515,0.57]	chr1	23147	9	INTRON	INTRON	LIX1L-AS1	ENSG00000234222.6	ENST00000412239.1:ENST00000437797.5:ENST00000630257.2:ENST00000600340.5:ENST00000598103.5:ENST00000598354.5:ENST00000599469.5:ENST00000597144.5:ENST00000595518.5:ENST00000595494.5:ENST00000599147.5:ENST00000599626.5:ENST00000601726.3:ENST00000448561.5:ENST00000421764.1	lncRNA	lncRNA	lncRNA	lncRNA	1	32	2	2.60899	3.602645	4.5963	0.0232669	0.00370287	0.118148	0.0561162
chr14	21020968	21021045	5833958	0	-	0.519481	(0.515,0.57]	chr14	554351	1	CDS	CDS:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NDRG2	ENSG00000165795.25	ENST00000350792.7:ENST00000298687.9:ENST00000397858.5:ENST00000360463.7:ENST00000397853.7:ENST00000556147.6:ENST00000553503.5:ENST00000555158.5:ENST00000554104.5:ENST00000557633.5:ENST00000397847.6:ENST00000397851.6:ENST00000554143.5:ENST00000557353.5:ENST00000298684.9:ENST00000397844.6:ENST00000403829.7:ENST00000553593.5:ENST00000556008.5:ENST00000635386.1:ENST00000556366.5:ENST00000555026.5:ENST00000556974.5:ENST00000554277.5:ENST00000553867.5:ENST00000449431.6:ENST00000555695.5:ENST00000557169.5:ENST00000555869.5:ENST00000557182.5:ENST00000555733.5:ENST00000555384.5:ENST00000554094.5:ENST00000366204.6:ENST00000553741.5:ENST00000557728.5:ENST00000553567.1:ENST00000557305.1:ENST00000557198.5:ENST00000553442.5:ENST00000556420.5:ENST00000553784.5:ENST00000555142.5:ENST00000557149.5:ENST00000555767.5:ENST00000554531.5:ENST00000557264.5:ENST00000557676.5:ENST00000556924.5:ENST00000556329.6:ENST00000554379.5:ENST00000554398.5:ENST00000554472.5:ENST00000554483.5:ENST00000557616.5:ENST00000555657.5:ENST00000556457.5:ENST00000557274.5:ENST00000556688.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	32	2	2.60899	3.602645	4.5963	0.0232669	0.00370287	0.118148	0.0561162
chr8	124363760	124363860	4043428	0	-	0.52	(0.515,0.57]	chr8	368840	326	INTRON	INTRON	TMEM65	ENSG00000164983.8	ENST00000297632.8	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	2.60899	3.602645	4.5963	0.0232669	0.00370287	0.118148	0.0561162
chr11	87118372	87118472	4843618	0	+	0.34	(0.32,0.35]	chr11	451856	266	INTRON	INTRON	TMEM135	ENSG00000166575.17	ENST00000340353.11:ENST00000529023.5:ENST00000526733.5:ENST00000305494.6:ENST00000532959.5:ENST00000525018.5:ENST00000531800.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	59	2	1.78201	3.60253	5.42305	0.0365003	0.00149027	0.153759	0.035
chrX	104176242	104176342	7698043	0	+	0.31	(0.28,0.32]	chrX	787761	4	SS5_PROX	SS5_PROX:INTRON	FAM199X	ENSG00000123575.9	ENST00000493442.2	protein_coding	protein_coding	protein_coding	protein_coding	2	52	2	2.33771	3.6025099999999997	4.86731	0.0142701	0.0116253	0.103838	0.0889104
chr10	68624214	68624314	4441526	0	+	0.45	(0.44,0.476]	chr10	409530	228	INTRON	INTRON	TET1	ENSG00000138336.9	ENST00000373644.5	protein_coding	protein_coding	protein_coding	protein_coding	2	45	2	2.00609	3.6024450000000003	5.1988	0.0360127	0.00151532	0.152355	0.0352794
chr14	73957455	73957550	5787217	0	+	0.442105	(0.44,0.476]	chr14	548292	8	INTRON	INTRON	COQ6	ENSG00000119723.17	ENST00000394026.8:ENST00000554341.6:ENST00000553462.6:ENST00000629426.2:ENST00000556300.6:ENST00000557584.5:ENST00000334571.7:ENST00000554920.5:ENST00000557205.6:ENST00000554320.1:ENST00000555511.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	45	2	2.00609	3.6024450000000003	5.1988	0.0360127	0.00151532	0.152355	0.0352794
chr6	87226832	87226931	2913978	0	+	0.474747	(0.44,0.476]	chr6	275311	30	INTRON	INTRON	ZNF292	ENSG00000188994.13	ENST00000369577.8:ENST00000518845.1:ENST00000339907.8:ENST00000496806.2	protein_coding	protein_coding	protein_coding	protein_coding	2	45	2	2.00609	3.6024450000000003	5.1988	0.0360127	0.00151532	0.152355	0.0352794
chr18	9112553	9112653	6868692	0	+	0.59	(0.57,1]	chr18	680510	72	INTRON	INTRON	NDUFV2	ENSG00000178127.13	ENST00000577703.1:ENST00000318388.11:ENST00000583375.5:ENST00000400033.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	83	2	3.09104	3.6022499999999997	4.11346	1.70324e-5	5.50662e-6	0.00330681	0.00162995
chr1	3737495	3737595	363743	0	-	0.39	(0.378,0.408]	chr1	42584	20	EXON_LNCRNA	EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TP73-AS1	ENSG00000227372.12	ENST00000648526.1:ENST00000418088.6:ENST00000648432.1:ENST00000648479.1:ENST00000452079.5:ENST00000650545.1:ENST00000419973.1:ENST00000647831.1:ENST00000648600.1:ENST00000423764.6:ENST00000647817.1:ENST00000649123.1:ENST00000648270.1:ENST00000650039.1:ENST00000650037.1:ENST00000649468.1:ENST00000648553.1:ENST00000649348.1:ENST00000636630.1	transcribed_unitary_pseudogene	processed_transcript	transcribed_unitary_pseudogene	processed_transcript	3	102	2	3.21732	3.60216	3.987	2.98082e-4	1.51115e-4	0.015483	0.0112678
chr10	3778553	3778652	4543130	0	-	0.40404	(0.378,0.408]	chr10	419496	27	UTR3	UTR3:EXON_MRNA:INTRON	KLF6	ENSG00000067082.15	ENST00000497571.6:ENST00000461124.1:ENST00000542957.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	140	2	2.74434	3.602035	4.45973	2.94671e-4	1.27812e-5	0.0153497	0.00283726
chr2	15344217	15344317	1070960	0	-	0.24	[0,0.28]	chr2	114279	131	INTRON	INTRON	NBAS	ENSG00000151779.13	ENST00000281513.10:ENST00000442506.5	protein_coding	protein_coding	protein_coding	protein_coding	3	68	2	1.99345	3.601995	5.21054	0.0211881	0.00758653	0.123133	0.0749063
chr6	13676709	13676809	3058874	0	-	0.32	(0.28,0.32]	chr6	284542	175	INTRON	INTRON	RANBP9	ENSG00000010017.13	ENST00000011619.6	protein_coding	protein_coding	protein_coding	protein_coding	4	72	2	1.90241	3.6019699999999997	5.30153	0.0157236	0.00332518	0.109464	0.0512081
chr11	31485811	31485910	4939002	0	-	0.292929	(0.28,0.32]	chr11	462597	77	INTRON	INTRON	IMMP1L	ENSG00000148950.11	ENST00000532287.6:ENST00000534812.5:ENST00000526776.5:ENST00000278200.5:ENST00000648582.1:ENST00000533642.1:ENST00000527184.5:ENST00000528161.5:ENST00000532624.5:ENST00000529749.5:ENST00000530023.5:ENST00000531693.1:ENST00000532668.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	62	2	1.81152	3.601935	5.39235	0.034446	0.0024844	0.147767	0.0446195
chr16	21496889	21496989	6461322	0	-	0.43	(0.408,0.44]	chr16	623371	89	INTRON	INTRON	SMG1P3	ENSG00000180747.15	ENST00000522480.5:ENST00000522841.6:ENST00000437413.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	2	74	2	3.37162	3.601895	3.83217	0.00208674	1.79883e-4	0.0411801	0.0116696
chr11	9283593	9283693	4909116	0	-	0.25	[0,0.28]	chr11	460129	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	TMEM41B	ENSG00000166471.11	ENST00000524543.5:ENST00000528080.6:ENST00000299596.8:ENST00000611268.4:ENST00000533867.1:ENST00000527813.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	43	2	2.90797	3.6016649999999997	4.29536	0.0590175	0.0118539	0.167915	0.0962115
chr2	175133846	175133945	1271995	0	-	0.242424	[0,0.28]	chr2	134463	7	INTRON	INTRON	ATF2	ENSG00000115966.18	ENST00000345739.9:ENST00000426833.7:ENST00000264110.7:ENST00000409437.5:ENST00000409635.5:ENST00000428760.5:ENST00000392544.5:ENST00000417080.5:ENST00000456655.5:ENST00000421438.5:ENST00000429579.5:ENST00000415955.5:ENST00000409499.5:ENST00000435231.6:ENST00000437522.5:ENST00000409833.5:ENST00000413123.5:ENST00000445349.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	43	2	2.90797	3.6016649999999997	4.29536	0.0590175	0.0118539	0.167915	0.0962115
chr5	159171801	159171900	2758807	0	-	0.272727	[0,0.28]	chr5	260338	16	INTRON	INTRON	RNF145	ENSG00000145860.12	ENST00000424310.7:ENST00000519865.5:ENST00000274542.6:ENST00000611185.4:ENST00000521606.6:ENST00000518802.5:ENST00000520638.1:ENST00000521266.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	43	2	2.90797	3.6016649999999997	4.29536	0.0590175	0.0118539	0.167915	0.0962115
chr18	2720127	2720227	6865532	0	+	0.28	[0,0.28]	chr18	680043	13	INTRON	INTRON	SMCHD1	ENSG00000101596.17	ENST00000320876.11:ENST00000688342.1:ENST00000693213.1:ENST00000577880.5:ENST00000584897.5:ENST00000581711.1:ENST00000583441.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	56	2	1.8986	3.60142	5.30424	0.0531512	0.00584781	0.179787	0.0667594
chr2	61364042	61364142	1129476	0	-	0.47	(0.44,0.476]	chr2	121448	130	INTRON	INTRON	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000453133.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	54	2	1.75627	3.601235	5.4462	0.0380723	5.83686e-4	0.157702	0.0223753
chr6	17693706	17693806	3066082	0	-	0.46	(0.44,0.476]	chr6	284872	47	INTRON	INTRON	NUP153	ENSG00000124789.12	ENST00000613258.4:ENST00000537253.5:ENST00000262077.3	protein_coding	protein_coding	protein_coding	protein_coding	5	68	2	1.66775	3.60107	5.53439	0.0219883	4.05863e-4	0.123836	0.0185763
chr8	25454619	25454718	3926313	0	-	0.313131	(0.28,0.32]	chr8	359463	27	INTRON	INTRON	KCTD9	ENSG00000104756.16	ENST00000221200.9:ENST00000519665.5:ENST00000523140.5:ENST00000522493.5:ENST00000518067.5:ENST00000518997.5:ENST00000523294.5:ENST00000521458.5:ENST00000524217.1:ENST00000517914.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	87	2	1.56729	3.6010649999999997	5.63484	0.0260617	0.00108324	0.133676	0.0303015
chr19	7938497	7938597	7130275	0	-	0.56	(0.515,0.57]	chr19	718339	3	SS3_PROX	SS3_PROX:INTRON	TIMM44	ENSG00000104980.8	ENST00000270538.8:ENST00000595831.5:ENST00000595876.5:ENST00000597926.1:ENST00000600748.5:ENST00000600000.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	65	2	3.2024	3.6010400000000002	3.99968	0.00322022	5.71792e-5	0.0507087	0.00617842
chr16	23886379	23886479	6324264	0	+	0.4	(0.378,0.408]	chr16	605697	172	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000645517.1:ENST00000498739.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	164	2	3.17745	3.6009450000000003	4.02444	1.31721e-4	2.39148e-6	0.0104376	9.79452e-4
chr1	153906377	153906477	557601	0	-	0.39	(0.378,0.408]	chr1	65995	70	INTRON	INTRON	GATAD2B	ENSG00000143614.10	ENST00000368655.5:ENST00000634544.1:ENST00000634408.1:ENST00000634401.1:ENST00000634791.1:ENST00000637331.1:ENST00000636008.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	46	2	2.46345	3.60092	4.73839	0.00837252	0.00827342	0.0813266	0.0774402
chr14	37102585	37102685	5877313	0	-	0.36	(0.35,0.378]	chr14	558013	2272	INTRON	INTRON	SLC25A21	ENSG00000183032.12	ENST00000331299.6:ENST00000555449.5:ENST00000557611.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	47	2	2.34278	3.60074	4.8587	0.0129593	0.00695662	0.0991015	0.0718189
chr17	64526455	64526532	6662104	0	+	0.350649	(0.35,0.378]	chr17	650247	3	SS5_PROX	SS5_PROX:INTRON	CEP95	ENSG00000258890.8	ENST00000556440.7:ENST00000553956.6:ENST00000577476.5:ENST00000579117.5:ENST00000583457.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	47	2	2.34278	3.60074	4.8587	0.0129593	0.00695662	0.0991015	0.0718189
chr6	16136794	16136894	2825850	0	+	0.29	(0.28,0.32]	chr6	265309	57	INTRON	INTRON	MYLIP	ENSG00000007944.15	ENST00000356840.8:ENST00000349606.4	protein_coding	protein_coding	protein_coding	protein_coding	4	148	2	3.13172	3.6004750000000003	4.06923	1.83227e-4	1.46635e-4	0.0122816	0.0105341
chr22	37876242	37876337	7511969	0	+	0.368421	(0.35,0.378]	chr22	767212	2	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	EIF3L:ENSG00000279738	ENSG00000100129.18:ENSG00000279738.1	ENST00000412331.6:ENST00000624234.3:ENST00000381683.10:ENST00000652021.1:ENST00000477256.5:ENST00000406934.5:ENST00000482600.5:ENST00000623726.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	2	47	2	2.04358	3.6004050000000003	5.15723	0.0329533	0.00272706	0.145171	0.0467523
chr5	179579283	179579380	2560067	0	+	0.350515	(0.35,0.378]	chr5	244741	18	INTRON	INTRON	RUFY1	ENSG00000176783.15	ENST00000319449.9:ENST00000393448.6:ENST00000393438.6:ENST00000437570.6:ENST00000508609.5:ENST00000514238.2:ENST00000502434.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	47	2	2.04358	3.6004050000000003	5.15723	0.0329533	0.00272706	0.145171	0.0467523
chr7	157200221	157200321	3454565	0	+	0.32	(0.28,0.32]	chr7	322959	75	INTRON	INTRON	UBE3C	ENSG00000009335.18	ENST00000348165.10	protein_coding	protein_coding	protein_coding	protein_coding	4	71	2	1.72287	3.6003299999999996	5.47779	0.0286502	0.00187048	0.139456	0.0390476
chr17	46076450	46076550	6783696	0	-	0.35	(0.32,0.35]	chr17	669193	84	INTRON	INTRON	KANSL1	ENSG00000120071.15	ENST00000574590.6:ENST00000572904.6:ENST00000432791.7:ENST00000575318.6:ENST00000638275.1:ENST00000262419.10:ENST00000648792.1:ENST00000639531.1:ENST00000639150.1:ENST00000639853.1:ENST00000571698.2:ENST00000639375.1:ENST00000577114.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	55	2	2.2664	3.6003249999999998	4.93425	0.0199969	0.00281048	0.109608	0.0488779
chr2	181002935	181003035	936195	0	+	0.39	(0.378,0.408]	chr2	102627	130	INTRON	INTRON	UBE2E3	ENSG00000170035.16	ENST00000602303.5:ENST00000602959.5:ENST00000602479.5:ENST00000392415.6:ENST00000602291.5:ENST00000410062.9:ENST00000602499.5:ENST00000602710.5:ENST00000602762.5:ENST00000602888.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	63	2	1.9714	3.60032	5.22924	0.0109363	0.00172721	0.0924799	0.0374701
chr4	67533692	67533791	2153396	0	-	0.434343	(0.408,0.44]	chr4	211997	24	INTRON	INTRON	CENPC	ENSG00000145241.11	ENST00000273853.11:ENST00000506882.5:ENST00000510189.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	46	2	2.60048	3.600135	4.59979	0.0109537	0.00484324	0.0873034	0.0640618
chr6	34310177	34310277	3083948	0	-	0.49	(0.476,0.515]	chr6	288627	141	INTRON	INTRON	NUDT3:RPS10-NUDT3	ENSG00000272325.2:ENSG00000270800.3	ENST00000607016.2:ENST00000639725.1:ENST00000639877.1:ENST00000605528.2	protein_coding	protein_coding	protein_coding	protein_coding	4	72	2	2.20678	3.6001000000000003	4.99342	0.00484957	0.00139274	0.0605773	0.0341261
chr1	42262517	42262616	431704	0	-	0.484848	(0.476,0.515]	chr1	52311	342	INTRON	INTRON	FOXJ3	ENSG00000198815.9	ENST00000372573.5:ENST00000372572.5:ENST00000361776.5:ENST00000545068.5:ENST00000361346.6:ENST00000445886.5	protein_coding	protein_coding	protein_coding	protein_coding	2	46	2	2.58615	3.600085	4.61402	0.00947755	0.00515536	0.0817766	0.0650394
chr17	22097203	22097303	6578635	0	+	0.18	[0,0.28]	chr17	639556	59	INTRON	INTRON	UBBP4	ENSG00000263563.7	ENST00000648259.1:ENST00000688301.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	6	94	2	1.40145	3.6000449999999997	5.79864	0.0475782	0.00125481	0.169854	0.0323608
chr19	12690791	12690882	7141066	0	-	0.483516	(0.476,0.515]	chr19	720614	2	SS5_PROX	SS5_PROX:INTRON	FBXW9	ENSG00000132004.13	ENST00000587296.1:ENST00000393261.8:ENST00000587955.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	45	2	1.99341	3.59993	5.20645	0.037389	0.00136049	0.155878	0.0336321
chr10	97743564	97743664	4505353	0	+	0.42	(0.408,0.44]	chr10	414781	4	SS5_PROX	SS5_PROX:INTRON	ZFYVE27	ENSG00000155256.18	ENST00000337540.11:ENST00000370613.7:ENST00000370610.7:ENST00000357540.8:ENST00000393677.8:ENST00000423811.3:ENST00000684270.1:ENST00000359980.5	protein_coding	protein_coding	protein_coding	protein_coding	2	45	2	2.00768	3.59985	5.19202	0.035843	0.0016671	0.152216	0.0369207
chr19	959206	959302	6992825	0	+	0.5	(0.476,0.515]	chr19	692400	12	INTRON	INTRON	ARID3A	ENSG00000116017.11	ENST00000263620.8:ENST00000587532.5:ENST00000457152.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	78	2	1.94021	3.59983	5.25945	0.00523626	0.00111445	0.0656295	0.0306328
chr6	43623328	43623422	3097529	0	-	0.468085	(0.44,0.476]	chr6	290163	5	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	GTPBP2	ENSG00000172432.19	ENST00000307114.11:ENST00000476510.5:ENST00000307126.10:ENST00000459959.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	343	2	3.40243	3.599745	3.79706	7.61689e-7	1.90225e-7	5.35097e-4	2.03069e-4
chr1	112622081	112622180	186351	0	+	0.292929	(0.28,0.32]	chr1	20636	18	INTRON	INTRON	CAPZA1	ENSG00000116489.13	ENST00000485542.5:ENST00000476936.5:ENST00000263168.4:ENST00000498626.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	38	2	2.53522	3.599405	4.66359	0.0310424	0.0193496	0.143457	0.108861
chr12	91547358	91547458	5384690	0	-	0.31	(0.28,0.32]	chr12	513485	401	INTRON	INTRON	ENSG00000289605	ENSG00000289605.1	ENST00000685093.1	lncRNA	lncRNA	lncRNA	lncRNA	1	38	2	2.53522	3.599405	4.66359	0.0310424	0.0193496	0.143457	0.108861
chr16	68138410	68138510	6370757	0	+	0.29	(0.28,0.32]	chr16	612203	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	NFATC3	ENSG00000072736.19	ENST00000563319.5:ENST00000569766.5:ENST00000553077.5:ENST00000566301.5:ENST00000549350.5:ENST00000566893.5:ENST00000575270.5:ENST00000561714.5:ENST00000346183.8:ENST00000568466.6:ENST00000539828.6:ENST00000562171.1:ENST00000349223.9:ENST00000329524.8:ENST00000379165.8:ENST00000562926.5:ENST00000570212.5:ENST00000563796.5:ENST00000567152.5:ENST00000563288.5:ENST00000535127.2:ENST00000565750.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	38	2	2.53522	3.599405	4.66359	0.0310424	0.0193496	0.143457	0.108861
chr17	51219639	51219734	6797463	0	-	0.284211	(0.28,0.32]	chr17	671106	2	INTRON	INTRON	MBTD1	ENSG00000011258.16	ENST00000586178.6:ENST00000415868.5:ENST00000405860.7:ENST00000591270.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	38	2	2.53522	3.599405	4.66359	0.0310424	0.0193496	0.143457	0.108861
chr22	19879029	19879122	7555673	0	-	0.301075	(0.28,0.32]	chr22	772474	2	INTRON	INTRON	TXNRD2	ENSG00000184470.21	ENST00000400518.5:ENST00000542719.6:ENST00000494454.5:ENST00000474308.5:ENST00000400525.6:ENST00000400521.7:ENST00000400519.6:ENST00000634537.1:ENST00000487165.5:ENST00000462330.5:ENST00000495655.2:ENST00000485358.5:ENST00000462843.2:ENST00000634471.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:non_stop_decay:nonsense_mediated_decay	1	38	2	2.53522	3.599405	4.66359	0.0310424	0.0193496	0.143457	0.108861
chr22	47707383	47707483	7540120	0	+	0.29	(0.28,0.32]	chr22	770712	29	EXON_LNCRNA	EXON_LNCRNA:INTRON	ENSG00000224271	ENSG00000224271.7	ENST00000664761.1:ENST00000651071.1:ENST00000650683.1:ENST00000651536.1:ENST00000652499.1:ENST00000652656.1:ENST00000652072.1:ENST00000651445.1:ENST00000423737.5:ENST00000650834.1:ENST00000650660.1:ENST00000651056.1:ENST00000652611.1:ENST00000652399.1:ENST00000652123.1:ENST00000651311.1:ENST00000651458.1:ENST00000652505.1:ENST00000652702.2:ENST00000652334.1:ENST00000652030.2:ENST00000651403.1:ENST00000652228.1:ENST00000651124.1:ENST00000650972.1:ENST00000651985.1:ENST00000651637.1:ENST00000650924.1:ENST00000651003.1:ENST00000652168.1:ENST00000651948.2:ENST00000651293.1:ENST00000651939.1:ENST00000650787.1:ENST00000651517.1:ENST00000651662.1:ENST00000652690.1:ENST00000651638.1:ENST00000670853.1:ENST00000652750.1:ENST00000652080.1:ENST00000651294.1:ENST00000652164.1:ENST00000651538.1:ENST00000650775.1:ENST00000651983.1:ENST00000651033.1:ENST00000651584.1:ENST00000650884.1:ENST00000651270.1	lncRNA	lncRNA	lncRNA	lncRNA	1	38	2	2.53522	3.599405	4.66359	0.0310424	0.0193496	0.143457	0.108861
chr7	140784135	140784231	3662308	0	-	0.28125	(0.28,0.32]	chr7	340039	6	INTRON	INTRON	BRAF	ENSG00000157764.14	ENST00000496384.7:ENST00000644969.2:ENST00000644120.1:ENST00000642875.1:ENST00000646891.1:ENST00000644905.1:ENST00000642228.1:ENST00000288602.11:ENST00000646730.1:ENST00000644650.1:ENST00000647434.1:ENST00000497784.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	38	2	2.53522	3.599405	4.66359	0.0310424	0.0193496	0.143457	0.108861
chr3	185738914	185739014	1885487	0	-	0.29	(0.28,0.32]	chr3	188573	402	INTRON	INTRON	IGF2BP2	ENSG00000073792.16	ENST00000382199.7:ENST00000346192.7:ENST00000457616.6:ENST00000421047.3:ENST00000461957.5:ENST00000493302.5:ENST00000466476.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	39	2	2.86113	3.59939	4.33765	0.039714	0.0122675	0.143072	0.0969406
chr7	75429642	75429742	3558359	0	-	0.3	(0.28,0.32]	chr7	331515	28	INTRON	INTRON	POM121C	ENSG00000272391.6	ENST00000615331.5:ENST00000607367.5:ENST00000473168.1:ENST00000439629.2:ENST00000479864.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	39	2	2.86113	3.59939	4.33765	0.039714	0.0122675	0.143072	0.0969406
chr8	140862217	140862317	4078673	0	-	0.31	(0.28,0.32]	chr8	370519	152	INTRON	INTRON	PTK2	ENSG00000169398.20	ENST00000696786.1:ENST00000522684.5:ENST00000395218.3:ENST00000519654.5:ENST00000521059.5:ENST00000517887.5:ENST00000519993.5:ENST00000340930.7:ENST00000519419.5:ENST00000524357.5:ENST00000521791.5:ENST00000523067.5:ENST00000520828.5:ENST00000520475.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	39	2	2.86113	3.59939	4.33765	0.039714	0.0122675	0.143072	0.0969406
chr1	174452644	174452744	260058	0	+	0.51	(0.476,0.515]	chr1	30824	32	INTRON	INTRON	RABGAP1L	ENSG00000152061.24	ENST00000357444.10:ENST00000251507.8:ENST00000681986.1:ENST00000367690.5:ENST00000526253.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	46	2	1.8388	3.599375	5.35995	0.0564473	7.54256e-4	0.184423	0.0251179
chr10	69146924	69147024	4444778	0	+	0.39	(0.378,0.408]	chr10	410023	135	INTRON	INTRON	VPS26A	ENSG00000122958.15	ENST00000373382.5:ENST00000395098.5:ENST00000489656.5:ENST00000263559.11:ENST00000497564.5:ENST00000490696.5:ENST00000467852.1:ENST00000489794.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	34	2	2.78705	3.59937	4.41169	0.0199606	0.0135539	0.109608	0.101363
chr12	121342169	121342269	5437083	0	-	0.39	(0.378,0.408]	chr12	519914	1	SS3_PROX	SS3_PROX:INTRON	ANAPC5	ENSG00000089053.13	ENST00000261819.8:ENST00000541887.5:ENST00000534976.5:ENST00000441917.6:ENST00000541652.5:ENST00000544442.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	34	2	2.78705	3.59937	4.41169	0.0199606	0.0135539	0.109608	0.101363
chr3	182972218	182972317	1879851	0	-	0.393939	(0.378,0.408]	chr3	187821	61	INTRON	INTRON	DCUN1D1	ENSG00000043093.15	ENST00000292782.9:ENST00000632685.1:ENST00000460412.6:ENST00000469954.5:ENST00000492563.1:ENST00000497606.5:ENST00000487822.5:ENST00000466812.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	34	2	2.78705	3.59937	4.41169	0.0199606	0.0135539	0.109608	0.101363
chr3	185747008	185747108	1885568	0	-	0.38	(0.378,0.408]	chr3	188573	483	INTRON	INTRON	IGF2BP2	ENSG00000073792.16	ENST00000382199.7:ENST00000346192.7:ENST00000457616.6:ENST00000421047.3:ENST00000461957.5:ENST00000493302.5:ENST00000466476.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	34	2	2.78705	3.59937	4.41169	0.0199606	0.0135539	0.109608	0.101363
chr8	111015032	111015132	4027348	0	-	0.38	(0.378,0.408]	chr8	367854	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	LINC01608	ENSG00000253877.6	ENST00000670392.1:ENST00000658597.1:ENST00000662310.1:ENST00000671489.1:ENST00000668858.1:ENST00000669698.1:ENST00000665803.1:ENST00000658028.1:ENST00000664704.1:ENST00000661954.1:ENST00000661561.1:ENST00000658081.1:ENST00000667145.1:ENST00000658119.1:ENST00000524283.5:ENST00000669893.1:ENST00000660015.1:ENST00000668956.1:ENST00000657323.1:ENST00000663408.1:ENST00000653924.1:ENST00000659834.1:ENST00000658508.1:ENST00000669744.1:ENST00000658733.1:ENST00000657532.1:ENST00000665011.1:ENST00000523557.2:ENST00000669997.1:ENST00000663666.1:ENST00000660667.1	lncRNA	lncRNA	lncRNA	lncRNA	1	34	2	2.78705	3.59937	4.41169	0.0199606	0.0135539	0.109608	0.101363
chr9	136443622	136443722	4374608	0	-	0.4	(0.378,0.408]	chr9	402943	4	SS5_PROX	SS5_PROX:INTRON	SEC16A	ENSG00000148396.19	ENST00000467838.2:ENST00000290037.10:ENST00000313050.11:ENST00000371706.8:ENST00000453963.5:ENST00000277537.10:ENST00000313084.9:ENST00000684901.1:ENST00000689049.1:ENST00000689439.1:ENST00000688461.1:ENST00000688052.1:ENST00000690691.1:ENST00000431893.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	34	2	2.78705	3.59937	4.41169	0.0199606	0.0135539	0.109608	0.101363
chr16	8808734	8808832	6284768	0	+	0.561224	(0.515,0.57]	chr16	601833	13	EXON_MRNA	EXON_MRNA:INTRON	PMM2	ENSG00000140650.13	ENST00000566983.5:ENST00000682008.1:ENST00000683435.1:ENST00000683094.1:ENST00000566604.5:ENST00000570134.5:ENST00000268261.9:ENST00000683274.1:ENST00000682393.1:ENST00000566540.5:ENST00000562318.5:ENST00000565896.5:ENST00000568602.5:ENST00000570076.5:ENST00000569958.5:ENST00000565221.5:ENST00000564069.1:ENST00000567697.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	41	2	2.51561	3.599355	4.6831	0.00635044	0.00471288	0.0723103	0.0600108
chr4	17589177	17589277	1926651	0	+	0.53	(0.515,0.57]	chr4	193641	2	SS5_PROX	SS5_PROX:INTRON	LAP3	ENSG00000002549.13	ENST00000226299.9:ENST00000618908.4:ENST00000606142.5:ENST00000513105.1:ENST00000504614.5:ENST00000503467.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	41	2	2.51561	3.599355	4.6831	0.00635044	0.00471288	0.0723103	0.0600108
chr8	104528714	104528814	4014118	0	-	0.41	(0.408,0.44]	chr8	367433	193	INTRON	INTRON	LRP12	ENSG00000147650.12	ENST00000424843.6:ENST00000276654.10:ENST00000520770.1:ENST00000519675.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	74	2	3.56057	3.59921	3.63785	9.67143e-4	4.70012e-4	0.0282401	0.0196294
chr8	123375863	123375962	4042434	0	-	0.494949	(0.476,0.515]	chr8	368782	28	INTRON	INTRON	ATAD2	ENSG00000156802.13	ENST00000287394.10:ENST00000517666.5:ENST00000521903.5:ENST00000519124.5:ENST00000521496.5:ENST00000530065.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	66	2	1.40757	3.599205	5.79084	0.0707852	3.67793e-5	0.184528	0.00485247
chr6	156973232	156973332	3009123	0	+	0.38	(0.378,0.408]	chr6	281124	295	INTRON	INTRON	ARID1B	ENSG00000049618.24	ENST00000346085.10:ENST00000636930.2:ENST00000647938.1:ENST00000350026.10:ENST00000674298.1:ENST00000674190.1:ENST00000414678.7:ENST00000638000.1:ENST00000319584.11:ENST00000452544.2:ENST00000637887.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	76	2	3.43645	3.5991	3.76175	0.00171162	2.68579e-4	0.037419	0.0145349
chr19	9427900	9427999	7132487	0	-	0.282828	(0.28,0.32]	chr19	718745	73	INTRON	INTRON	ZNF266	ENSG00000174652.20	ENST00000592904.7:ENST00000588221.5:ENST00000588933.5:ENST00000590306.5:ENST00000651268.1:ENST00000592292.5	protein_coding	protein_coding	protein_coding	protein_coding	2	57	2	2.05458	3.5989950000000004	5.14341	0.0381508	0.00185891	0.141764	0.039946
chr5	65933100	65933200	2370909	0	+	0.3	(0.28,0.32]	chr5	228472	59	INTRON	INTRON	ERBIN	ENSG00000112851.15	ENST00000380943.6:ENST00000507490.1:ENST00000416865.6:ENST00000380935.5:ENST00000284037.10:ENST00000380938.6:ENST00000511297.5:ENST00000506030.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	148	2	3.16884	3.598935	4.02903	2.19226e-4	1.20164e-4	0.0135522	0.00938389
chr7	22857862	22857961	3288722	0	+	0.545455	(0.515,0.57]	chr7	305434	9	EXON_LNCRNA	EXON_LNCRNA:INTRON	SNHG26	ENSG00000228649.10	ENST00000415611.8:ENST00000667557.1:ENST00000422542.4:ENST00000656301.1:ENST00000661147.1:ENST00000656687.2:ENST00000662021.1:ENST00000691516.1:ENST00000685098.1:ENST00000689892.1:ENST00000663057.1:ENST00000657608.1:ENST00000688000.1:ENST00000690219.1:ENST00000658124.1:ENST00000661582.1	lncRNA	lncRNA	lncRNA	lncRNA	2	41	2	2.03361	3.59887	5.16413	0.0325854	8.14815e-4	0.145164	0.0263656
chr9	137744490	137744590	4224754	0	+	0.54	(0.515,0.57]	chr9	388253	4	SS5_PROX	SS5_PROX:INTRON	EHMT1	ENSG00000181090.21	ENST00000462484.5:ENST00000371394.6:ENST00000460843.6:ENST00000629335.2:ENST00000636027.1:ENST00000637161.1:ENST00000637261.1:ENST00000637977.1:ENST00000626066.2:ENST00000638071.1:ENST00000495657.5:ENST00000637318.1:ENST00000478940.1:ENST00000640639.1:ENST00000629808.2:ENST00000462942.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	41	2	2.03361	3.59887	5.16413	0.0325854	8.14815e-4	0.145164	0.0263656
chr12	121917006	121917105	5238471	0	+	0.525253	(0.515,0.57]	chr12	497303	8	UTR3	UTR3:EXON_MRNA	PSMD9	ENSG00000110801.14	ENST00000261817.6:ENST00000541212.6	protein_coding	protein_coding	protein_coding	protein_coding	2	43	2	1.9459	3.598865	5.25183	0.0429089	2.6074e-4	0.148082	0.014326
chr7	7207032	7207132	3274835	0	+	0.4	(0.378,0.408]	chr7	304569	239	INTRON	INTRON	C1GALT1	ENSG00000106392.11	ENST00000429911.5:ENST00000436587.7:ENST00000467716.1:ENST00000476068.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	34	2	2.45932	3.598855	4.73839	0.0346754	0.00837252	0.148144	0.0774402
chr7	102091274	102091374	3369108	0	+	0.4	(0.378,0.408]	chr7	315245	205	INTRON	INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000497815.5:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000558469.5:ENST00000560541.5:ENST00000558836.5:ENST00000606749.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	34	2	2.45932	3.598855	4.73839	0.0346754	0.00837252	0.148144	0.0774402
chr1	55207197	55207297	465823	0	-	0.28	[0,0.28]	chr1	56290	287	INTRON	INTRON	USP24	ENSG00000162402.14	ENST00000294383.7	protein_coding	protein_coding	protein_coding	protein_coding	1	41	2	2.5055	3.598705	4.69191	0.0359431	0.0269474	0.152322	0.123442
chr5	54094441	54094541	2618751	0	-	0.27	[0,0.28]	chr5	248841	185	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	41	2	2.5055	3.598705	4.69191	0.0359431	0.0269474	0.152322	0.123442
chr7	157189212	157189296	3454454	0	+	0.238095	[0,0.28]	chr7	322956	4	UTR3	UTR3:EXON_MRNA:INTRON	UBE3C	ENSG00000009335.18	ENST00000611269.4:ENST00000348165.10:ENST00000389103.4	protein_coding	protein_coding	protein_coding	protein_coding	1	41	2	2.5055	3.598705	4.69191	0.0359431	0.0269474	0.152322	0.123442
chr8	27826904	27827004	3927222	0	-	0.27	[0,0.28]	chr8	359598	33	INTRON	INTRON	PBK	ENSG00000168078.10	ENST00000301905.9:ENST00000522944.5:ENST00000524266.1:ENST00000521226.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	41	2	2.5055	3.598705	4.69191	0.0359431	0.0269474	0.152322	0.123442
chr1	77479121	77479221	146729	0	+	0.26	[0,0.28]	chr1	16421	611	INTRON	INTRON	AK5	ENSG00000154027.19	ENST00000354567.7:ENST00000344720.9:ENST00000530826.1:ENST00000527263.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	41	2	2.43761	3.598625	4.75964	0.0423864	0.0232081	0.161744	0.118148
chr18	79678667	79678766	6990313	0	-	0.242424	[0,0.28]	chr18	691924	15	EXON_LNCRNA	EXON_LNCRNA	ENSG00000274828	ENSG00000274828.1	ENST00000616428.1	lncRNA	lncRNA	lncRNA	lncRNA	1	41	2	2.43761	3.598625	4.75964	0.0423864	0.0232081	0.161744	0.118148
chr5	105368860	105368960	2696115	0	-	0.26	[0,0.28]	chr5	254248	1226	INTRON	INTRON	ENSG00000251574	ENSG00000251574.8	ENST00000503650.1	lncRNA	lncRNA	lncRNA	lncRNA	1	41	2	2.43761	3.598625	4.75964	0.0423864	0.0232081	0.161744	0.118148
chr11	125497814	125497914	5048789	0	-	0.57	(0.515,0.57]	chr11	476402	16	INTRON	INTRON	FEZ1	ENSG00000149557.14	ENST00000648911.1	protein_coding	protein_coding	protein_coding	protein_coding	2	43	2	2.78208	3.5985300000000002	4.41498	0.0106866	0.00209264	0.0861859	0.0424943
chr2	183031193	183031293	1285961	0	-	0.22	[0,0.28]	chr2	135438	58	INTRON	INTRON	NCKAP1	ENSG00000061676.15	ENST00000361354.9:ENST00000360982.2	protein_coding	protein_coding	protein_coding	protein_coding	4	80	2	1.9865	3.5985199999999997	5.21054	0.0129046	0.00758653	0.0990564	0.0749063
chr14	73760122	73760212	5920608	0	-	0.5	(0.476,0.515]	chr14	562358	5	UTR5	UTR5:EXON_MRNA:INTRON	MIDEAS	ENSG00000156030.14	ENST00000394071.6:ENST00000423556.7:ENST00000286523.9:ENST00000486739.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	36	2	2.13854	3.598505	5.05847	0.0776563	0.00108081	0.196285	0.0300133
chr1	24831596	24831696	46929	0	+	0.36	(0.35,0.378]	chr1	5788	41	INTRON	INTRON	CLIC4	ENSG00000169504.15	ENST00000488683.1:ENST00000497755.1:ENST00000374379.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	37	2	3.10863	3.598395	4.08816	0.046021	0.00470896	0.149888	0.0631419
chr7	138468299	138468399	3434721	0	+	0.31	(0.28,0.32]	chr7	319959	66	INTRON	INTRON	TRIM24	ENSG00000122779.18	ENST00000343526.9:ENST00000415680.6:ENST00000497516.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	152	2	3.43575	3.59838	3.76101	6.8623e-4	2.68033e-5	0.0240041	0.00408175
chr1	151217194	151217293	225058	0	+	0.363636	(0.35,0.378]	chr1	25644	8	INTRON	INTRON	PIP5K1A	ENSG00000143398.20	ENST00000447555.5:ENST00000349792.9:ENST00000368888.9:ENST00000409426.5:ENST00000368890.8:ENST00000441902.6:ENST00000454769.2:ENST00000418435.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	51	2	1.98929	3.5983599999999996	5.20743	0.0417909	7.78116e-4	0.147075	0.0256531
chr16	18161955	18162055	6454254	0	-	0.44	(0.408,0.44]	chr16	621964	105	INTRON	INTRON	ENSG00000260242	ENSG00000260242.1	ENST00000563866.1	lncRNA	lncRNA	lncRNA	lncRNA	3	99	2	3.15799	3.5982849999999997	4.03858	3.8998e-4	1.05823e-4	0.0177751	0.00920724
chr1	89526461	89526561	157415	0	+	0.52	(0.515,0.57]	chr1	17160	1	SS3_PROX	SS3_PROX:INTRON	LRRC8B	ENSG00000197147.15	ENST00000330947.7:ENST00000439853.6:ENST00000449440.5:ENST00000640258.1:ENST00000639264.1	protein_coding	protein_coding	protein_coding	protein_coding	4	101	2	3.12677	3.5982649999999996	4.06976	7.69212e-5	5.5596e-5	0.00735438	0.00651834
chr2	9512223	9512323	1064034	0	-	0.25	[0,0.28]	chr2	113488	17	INTRON	INTRON	ADAM17	ENSG00000151694.14	ENST00000310823.8:ENST00000648548.1:ENST00000649227.1:ENST00000648857.1:ENST00000647979.1:ENST00000647610.1:ENST00000650116.1:ENST00000649686.1:ENST00000647622.1:ENST00000649972.1:ENST00000650241.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	57	2	2.3719	3.598115	4.82433	0.0200334	0.0139689	0.109608	0.10247
chr2	200580851	200580951	980502	0	+	0.27	[0,0.28]	chr2	105187	50	INTRON	INTRON	SGO2	ENSG00000163535.18	ENST00000357799.9	protein_coding	protein_coding	protein_coding	protein_coding	2	57	2	2.3719	3.598115	4.82433	0.0200334	0.0139689	0.109608	0.10247
chr11	32922477	32922577	4765008	0	+	0.46	(0.44,0.476]	chr11	440609	288	INTRON	INTRON	QSER1	ENSG00000060749.16	ENST00000650167.2:ENST00000399302.7:ENST00000527250.5	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	2.9586	3.5980749999999997	4.23755	0.0263357	0.00758318	0.122221	0.0773151
chr3	172198789	172198889	1561145	0	+	0.46	(0.44,0.476]	chr3	161562	116	INTRON	INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000469491.5:ENST00000336824.8:ENST00000416957.5:ENST00000478016.1:ENST00000443501.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	34	2	2.9586	3.5980749999999997	4.23755	0.0263357	0.00758318	0.122221	0.0773151
chr11	3047352	3047452	4892497	0	-	0.49	(0.476,0.515]	chr11	458493	2	SS5_PROX	SS5_PROX:INTRON	CARS1	ENSG00000110619.18	ENST00000397111.9:ENST00000531387.5:ENST00000380525.9:ENST00000278224.13:ENST00000529772.5:ENST00000526890.5:ENST00000439280.6:ENST00000524825.5:ENST00000527330.2:ENST00000465331.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	115	2	2.21677	3.59795	4.97913	0.0207026	1.44735e-7	0.110999	1.72951e-4
chr16	70269317	70269417	6510285	0	-	0.28	[0,0.28]	chr16	630568	3	SS5_PROX	SS5_PROX:INTRON	AARS1	ENSG00000090861.17	ENST00000674963.1:ENST00000675643.1:ENST00000675917.1:ENST00000674691.1:ENST00000261772.13:ENST00000675569.1:ENST00000676209.1:ENST00000676211.1:ENST00000676040.1:ENST00000675953.1:ENST00000675691.1:ENST00000676004.1:ENST00000675270.1:ENST00000675403.1:ENST00000676212.1:ENST00000675045.1:ENST00000675035.1:ENST00000676168.1:ENST00000674652.1:ENST00000675133.1:ENST00000675120.1:ENST00000674811.1:ENST00000674512.1:ENST00000675853.1:ENST00000565361.3:ENST00000676247.1:ENST00000674848.1:ENST00000674962.1:ENST00000675371.1:ENST00000675986.1:ENST00000674768.1:ENST00000675297.1:ENST00000675751.1:ENST00000564359.6:ENST00000675338.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	104	2	3.30695	3.59793	3.88891	0.00469836	2.88288e-4	0.0600108	0.0150627
chr7	5399676	5399776	3471841	0	-	0.46	(0.44,0.476]	chr7	324674	47	INTRON	INTRON	TNRC18	ENSG00000182095.15	ENST00000399537.8:ENST00000430969.6:ENST00000434361.5:ENST00000399434.2	protein_coding	protein_coding	protein_coding	protein_coding	1	37	2	2.86231	3.5978849999999998	4.33346	0.012214	0.0120349	0.0962115	0.0910127
chr9	69252997	69253090	4138945	0	+	0.333333	(0.32,0.35]	chr9	377210	2	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	TJP2	ENSG00000119139.21	ENST00000636438.1:ENST00000377245.9:ENST00000348208.9:ENST00000649114.1:ENST00000649943.1:ENST00000650333.1:ENST00000650522.1:ENST00000649783.1:ENST00000535702.6:ENST00000649134.1:ENST00000539225.2:ENST00000650084.1:ENST00000650460.1:ENST00000648042.1:ENST00000649927.1:ENST00000498204.2:ENST00000650353.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	39	2	3.13277	3.59788	4.06299	0.0559439	0.00458313	0.165463	0.0622676
chr12	93683271	93683371	5189958	0	+	0.51	(0.476,0.515]	chr12	490910	38	INTRON	INTRON	CRADD	ENSG00000169372.13	ENST00000332896.8:ENST00000549615.5:ENST00000552983.5:ENST00000552033.5:ENST00000551065.5:ENST00000548483.5:ENST00000542893.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	36	2	2.7646	3.597765	4.43093	0.0162075	0.00931369	0.101453	0.0855292
chr3	195974766	195974866	1896811	0	-	0.51	(0.476,0.515]	chr3	189831	2	SS3_PROX	SS3_PROX:INTRON	SDHAP1	ENSG00000185485.14	ENST00000427841.5:ENST00000440850.5:ENST00000457601.1	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript:transcribed_unprocessed_pseudogene	1	36	2	2.7646	3.597765	4.43093	0.0162075	0.00931369	0.101453	0.0855292
chr11	28135145	28135244	4752427	0	+	0.30303	(0.28,0.32]	chr11	440097	1	INTRON	INTRON	METTL15	ENSG00000169519.21	ENST00000406787.7:ENST00000451385.6:ENST00000407364.8:ENST00000532947.2:ENST00000634627.1:ENST00000634973.1:ENST00000303459.10:ENST00000634721.1:ENST00000634762.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	38	2	2.60656	3.597655	4.58875	0.0256827	0.0230574	0.133676	0.118056
chr12	50456255	50456355	5136904	0	+	0.3	(0.28,0.32]	chr12	484429	14	INTRON	INTRON	LARP4	ENSG00000161813.23	ENST00000293618.12:ENST00000429001.7:ENST00000398473.7:ENST00000522085.5:ENST00000518444.5:ENST00000518561.5:ENST00000347328.9:ENST00000520064.2	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	2.60656	3.597655	4.58875	0.0256827	0.0230574	0.133676	0.118056
chr12	120690115	120690214	5236262	0	+	0.313131	(0.28,0.32]	chr12	496968	22	INTRON	INTRON	MLEC	ENSG00000110917.8	ENST00000228506.8:ENST00000412616.2	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	2.60656	3.597655	4.58875	0.0256827	0.0230574	0.133676	0.118056
chr15	48779103	48779202	6166357	0	-	0.282828	(0.28,0.32]	chr15	587640	57	INTRON	INTRON	CEP152	ENSG00000103995.14	ENST00000380950.7:ENST00000399334.7:ENST00000325747.9:ENST00000560322.5	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay	1	38	2	2.60656	3.597655	4.58875	0.0256827	0.0230574	0.133676	0.118056
chr17	16150309	16150406	6734574	0	-	0.319588	(0.28,0.32]	chr17	660703	4	INTRON	INTRON	NCOR1	ENSG00000141027.22	ENST00000268712.8:ENST00000395851.5:ENST00000395848.5:ENST00000411510.5:ENST00000582357.5:ENST00000436828.5:ENST00000460276.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	38	2	2.60656	3.597655	4.58875	0.0256827	0.0230574	0.133676	0.118056
chr6	110718730	110718830	3189488	0	-	0.29	(0.28,0.32]	chr6	297114	478	INTRON	INTRON	CDK19	ENSG00000155111.15	ENST00000323817.7:ENST00000368911.8:ENST00000413605.6:ENST00000457688.5:ENST00000463016.1:ENST00000460913.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	38	2	2.60656	3.597655	4.58875	0.0256827	0.0230574	0.133676	0.118056
chr6	133979581	133979681	2962022	0	+	0.3	(0.28,0.32]	chr6	278516	1	SS3_PROX	SS3_PROX:INTRON	TBPL1	ENSG00000028839.10	ENST00000613034.4:ENST00000416965.5:ENST00000457715.1:ENST00000367871.5:ENST00000237264.9:ENST00000367869.1	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	2.60656	3.597655	4.58875	0.0256827	0.0230574	0.133676	0.118056
chr7	12360846	12360946	3484988	0	-	0.31	(0.28,0.32]	chr7	325887	3	SS5_PROX	SS5_PROX:INTRON	VWDE	ENSG00000146530.15	ENST00000275358.8:ENST00000452576.6:ENST00000521169.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	38	2	2.60656	3.597655	4.58875	0.0256827	0.0230574	0.133676	0.118056
chr1	179962312	179962412	267511	0	+	0.31	(0.28,0.32]	chr1	31297	68	INTRON	INTRON	CEP350	ENSG00000135837.16	ENST00000491495.2:ENST00000367607.8	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	2.46018	3.59746	4.73474	0.0375904	0.0162835	0.156054	0.101453
chr10	74178684	74178784	4456043	0	+	0.3	(0.28,0.32]	chr10	411534	14	INTRON	INTRON	ADK	ENSG00000156110.15	ENST00000672429.1:ENST00000539909.6:ENST00000286621.7:ENST00000478611.2:ENST00000673352.1:ENST00000673310.1:ENST00000672920.1:ENST00000672394.1:ENST00000372734.5:ENST00000673027.1:ENST00000541550.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	38	2	2.46018	3.59746	4.73474	0.0375904	0.0162835	0.156054	0.101453
chr12	871548	871648	5057381	0	+	0.31	(0.28,0.32]	chr12	477487	2	SS5_PROX	SS5_PROX:INTRON	WNK1	ENSG00000060237.19	ENST00000315939.11:ENST00000340908.9:ENST00000535572.5:ENST00000537687.5:ENST00000530271.6:ENST00000675631.1:ENST00000676347.1:ENST00000545285.5:ENST00000535698.1:ENST00000674810.1:ENST00000574679.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	38	2	2.46018	3.59746	4.73474	0.0375904	0.0162835	0.156054	0.101453
chr16	24191588	24191659	6327340	0	+	0.309859	(0.28,0.32]	chr16	605799	1	SS5_PROX	SS5_PROX:INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	2.46018	3.59746	4.73474	0.0375904	0.0162835	0.156054	0.101453
chr2	25780708	25780807	1084554	0	-	0.30303	(0.28,0.32]	chr2	115919	5	INTRON	INTRON	ASXL2	ENSG00000143970.18	ENST00000435504.9:ENST00000336112.9:ENST00000673455.1:ENST00000497092.1	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	2.46018	3.59746	4.73474	0.0375904	0.0162835	0.156054	0.101453
chr2	31978394	31978494	1090795	0	-	0.31	(0.28,0.32]	chr2	116913	152	INTRON	INTRON	MEMO1:DPY30	ENSG00000162959.14:ENSG00000162961.14	ENST00000295065.9:ENST00000446765.5:ENST00000404530.6:ENST00000490459.5:ENST00000426310.6:ENST00000413686.1:ENST00000407893.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	38	2	2.46018	3.59746	4.73474	0.0375904	0.0162835	0.156054	0.101453
chr3	31609126	31609225	1392163	0	+	0.30303	(0.28,0.32]	chr3	145710	83	INTRON	INTRON	STT3B	ENSG00000163527.10	ENST00000453168.5:ENST00000295770.4:ENST00000423527.5:ENST00000462235.5:ENST00000436236.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	38	2	2.46018	3.59746	4.73474	0.0375904	0.0162835	0.156054	0.101453
chr20	6022285	6022384	7230712	0	+	0.343434	(0.32,0.35]	chr20	734840	64	INTRON	INTRON	CRLS1	ENSG00000088766.12	ENST00000452938.5:ENST00000378863.9:ENST00000378868.4:ENST00000489345.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	85	2	3.57979	3.59743	3.61507	0.00118589	6.48785e-4	0.0315652	0.0230814
chr16	70126363	70126462	6383554	0	+	0.535354	(0.515,0.57]	chr16	613459	53	INTRON	INTRON	PDPR	ENSG00000090857.14	ENST00000288050.9:ENST00000561920.5:ENST00000568530.5:ENST00000398122.7:ENST00000565186.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	33	2	2.12971	3.59715	5.06459	0.0757903	6.03964e-4	0.194427	0.0223465
chr1	149207287	149207387	547964	0	-	0.46	(0.44,0.476]	chr1	64451	58	INTRON	INTRON	ENSG00000215861	ENSG00000215861.7	ENST00000685012.1:ENST00000313342.8:ENST00000663163.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	1	34	2	2.29425	3.597125	4.9	0.0518406	0.00423315	0.176696	0.0572185
chr11	5374391	5374491	4896963	0	-	0.45	(0.44,0.476]	chr11	459187	271	INTRON	INTRON	HBG2:ENSG00000239920:HBE1:OR51B5	ENSG00000196565.15:ENSG00000239920.2:ENSG00000213931.7:ENSG00000167355.8	ENST00000380252.6:ENST00000380259.7:ENST00000292896.3:ENST00000380237.5:ENST00000420726.6:ENST00000420465.6:ENST00000415970.6:ENST00000418729.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:nonsense_mediated_decay:processed_transcript	1	34	2	2.29425	3.597125	4.9	0.0518406	0.00423315	0.176696	0.0572185
chr1	246289119	246289219	678526	0	-	0.28	[0,0.28]	chr1	79733	955	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000453676.5:ENST00000462422.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	62	2	1.94204	3.5969100000000003	5.25178	0.0544139	0.0022031	0.164972	0.0435144
chr12	50435724	50435824	5136690	0	+	0.43	(0.408,0.44]	chr12	484399	1	SS5_PROX	SS5_PROX:INTRON	LARP4	ENSG00000161813.23	ENST00000293618.12:ENST00000429001.7:ENST00000398473.7:ENST00000548993.5:ENST00000522085.5:ENST00000518444.5:ENST00000518561.5:ENST00000347328.9:ENST00000550260.1	protein_coding	protein_coding	protein_coding	protein_coding	5	68	2	1.70933	3.5967450000000003	5.48416	0.0189186	5.43528e-4	0.118303	0.0215026
chr21	6990022	6990122	7425920	0	-	0.43	(0.408,0.44]	chr21	757520	30	INTRON	INTRON	ENSG00000280018	ENSG00000280018.4	ENST00000623165.3	lncRNA	lncRNA	lncRNA	lncRNA	5	68	2	1.54273	3.596615	5.6505	0.0337312	2.70553e-4	0.146709	0.0150813
chr14	100293865	100293963	5968319	0	-	0.510204	(0.476,0.515]	chr14	567017	6	UTR5	UTR5:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SLC25A29	ENSG00000197119.13	ENST00000359232.8:ENST00000554912.1:ENST00000392908.7:ENST00000556505.5:ENST00000555927.5:ENST00000554224.5:ENST00000556715.6:ENST00000554291.5:ENST00000554060.1:ENST00000556868.1:ENST00000555475.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	48	2	2.26789	3.59659	4.92529	0.0176567	0.00180221	0.105233	0.0392772
chr17	82459274	82459361	6692267	0	+	0.609195	(0.57,1]	chr17	654543	1	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	NARF	ENSG00000141562.19	ENST00000579198.5:ENST00000390006.8:ENST00000583181.5:ENST00000584192.5:ENST00000580296.5:ENST00000345415.11:ENST00000581202.5:ENST00000374611.9:ENST00000582585.1:ENST00000457415.7:ENST00000581795.5:ENST00000584411.5:ENST00000577812.5:ENST00000581743.5:ENST00000577432.5:ENST00000582907.5:ENST00000309794.16:ENST00000578082.5:ENST00000580748.1:ENST00000577410.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	54	2	3.07938	3.59642	4.11346	4.22401e-4	1.70324e-5	0.0183838	0.00330681
chr12	133049444	133049540	5252695	0	+	0.354167	(0.35,0.378]	chr12	499676	2	INTRON	INTRON	ZNF84	ENSG00000198040.11	ENST00000392319.6:ENST00000543758.5:ENST00000540031.5:ENST00000539354.6:ENST00000327668.11:ENST00000542874.5:ENST00000535439.2:ENST00000543124.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	51	2	1.87717	3.5963649999999996	5.31556	0.0555068	4.97087e-4	0.165463	0.0201536
chr21	46195375	46195475	7470526	0	-	0.5	(0.476,0.515]	chr21	761455	3	SS5_PROX	SS5_PROX:INTRON	LSS	ENSG00000160285.15	ENST00000356396.8:ENST00000397728.8:ENST00000457828.6:ENST00000522411.5	protein_coding	protein_coding	protein_coding	protein_coding	2	79	2	3.13389	3.59629	4.05869	0.00405473	8.7207e-5	0.0578376	0.00839538
chr16	85057918	85058018	6411145	0	+	0.52	(0.515,0.57]	chr16	615375	297	INTRON	INTRON	KIAA0513	ENSG00000135709.14	ENST00000538274.6:ENST00000567328.6:ENST00000683363.1	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	2.90311	3.59616	4.28921	0.00990051	0.0094233	0.0877296	0.0817766
chr6	3079018	3079116	2788219	0	+	0.530612	(0.515,0.57]	chr6	263312	7	INTRON	INTRON	RIPK1	ENSG00000137275.16	ENST00000678809.1:ENST00000678874.1:ENST00000380409.3:ENST00000677799.1:ENST00000677261.1:ENST00000676758.1:ENST00000676995.1:ENST00000679118.1:ENST00000479389.1:ENST00000676591.1:ENST00000259808.9:ENST00000676618.1:ENST00000678084.1:ENST00000677361.1:ENST00000676965.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	33	2	2.90311	3.59616	4.28921	0.00990051	0.0094233	0.0877296	0.0817766
chr9	2800962	2801062	4228122	0	-	0.55	(0.515,0.57]	chr9	388650	178	INTRON	INTRON	PUM3	ENSG00000080608.10	ENST00000490444.2	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	1	33	2	2.90311	3.59616	4.28921	0.00990051	0.0094233	0.0877296	0.0817766
chr22	19482489	19482589	7476859	0	+	0.6	(0.57,1]	chr22	762396	4	SS3_PROX	SS3_PROX:INTRON	CDC45	ENSG00000093009.11	ENST00000407835.6:ENST00000455750.6:ENST00000491520.5:ENST00000437685.6:ENST00000483431.5:ENST00000438587.6:ENST00000672837.1:ENST00000263201.7:ENST00000404724.7:ENST00000487669.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	54	2	2.62848	3.5960650000000003	4.56365	0.00129848	1.62533e-4	0.0333764	0.0116628
chr19	19082800	19082900	7034305	0	+	0.48	(0.476,0.515]	chr19	701229	183	INTRON	INTRON	SLC25A42	ENSG00000181035.14	ENST00000318596.8:ENST00000597661.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	34	2	2.94692	3.5959649999999996	4.24501	0.0247713	0.00794331	0.12011	0.0797304
chr2	227544273	227544373	1026392	0	+	0.49	(0.476,0.515]	chr2	109623	69	INTRON	INTRON	AGFG1	ENSG00000173744.18	ENST00000409979.6:ENST00000310078.13:ENST00000409315.5:ENST00000373671.7:ENST00000409171.5:ENST00000458212.1	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	2.94692	3.5959649999999996	4.24501	0.0247713	0.00794331	0.12011	0.0797304
chr5	54037307	54037407	2618177	0	-	0.27	[0,0.28]	chr5	248835	1253	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	67	2	1.75741	3.595845	5.43428	0.0424454	0.00400834	0.161763	0.0551303
chr9	37230712	37230812	4118764	0	+	0.23	[0,0.28]	chr9	375389	438	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000461038.5:ENST00000488607.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	67	2	1.75741	3.595845	5.43428	0.0424454	0.00400834	0.161763	0.0551303
chr1	41176160	41176260	430165	0	-	0.24	[0,0.28]	chr1	52248	133	INTRON	INTRON	SCMH1	ENSG00000010803.17	ENST00000695335.1:ENST00000372596.5:ENST00000372597.5:ENST00000337495.9:ENST00000695336.1	protein_coding	protein_coding	protein_coding	protein_coding	4	77	2	1.49274	3.5957	5.69866	0.0592697	0.00175225	0.189982	0.0376491
chr17	82620713	82620812	6853406	0	-	0.232323	[0,0.28]	chr17	679343	12	INTRON	INTRON	WDR45B	ENSG00000141580.16	ENST00000392325.9:ENST00000572583.5:ENST00000573656.5:ENST00000571835.5:ENST00000573616.5:ENST00000571767.5:ENST00000571817.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	41	2	2.57033	3.595585	4.62084	0.0313633	0.0305273	0.143385	0.13151
chr2	233554179	233554279	1343507	0	-	0.27	[0,0.28]	chr2	140774	4	SS5_PROX	SS5_PROX:INTRON	USP40	ENSG00000085982.15	ENST00000450966.5:ENST00000251722.10:ENST00000678225.2:ENST00000427112.6	protein_coding	protein_coding	protein_coding	protein_coding	1	41	2	2.57033	3.595585	4.62084	0.0313633	0.0305273	0.143385	0.13151
chr8	140979254	140979354	4079857	0	-	0.27	[0,0.28]	chr8	370582	246	INTRON	INTRON	PTK2	ENSG00000169398.20	ENST00000696786.1:ENST00000522684.5:ENST00000395218.3:ENST00000521059.5:ENST00000519993.5:ENST00000340930.7:ENST00000524357.5:ENST00000521791.5:ENST00000523067.5:ENST00000520828.5:ENST00000519881.5:ENST00000520892.5:ENST00000523803.5:ENST00000521907.5:ENST00000517453.5:ENST00000520045.5:ENST00000521332.5:ENST00000524040.5:ENST00000523679.1:ENST00000524257.5:ENST00000523797.1:ENST00000519635.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	41	2	2.57033	3.595585	4.62084	0.0313633	0.0305273	0.143385	0.13151
chr5	95794613	95794710	2431895	0	+	0.28866000000000003	(0.28,0.32]	chr5	233708	7	UTR3	UTR3:EXON_MRNA:INTRON	RHOBTB3	ENSG00000164292.13	ENST00000379982.8:ENST00000513091.1	protein_coding	protein_coding	protein_coding	protein_coding	11	337	2	2.71367	3.59556	4.47745	4.31292e-5	1.19636e-6	0.00531871	6.99433e-4
chr2	32181880	32181979	729940	0	+	0.242424	[0,0.28]	chr2	84166	39	INTRON	INTRON	SLC30A6	ENSG00000152683.14	ENST00000357055.7:ENST00000435660.5:ENST00000282587.9:ENST00000449777.5:ENST00000454324.5:ENST00000379343.6:ENST00000440718.5:ENST00000406369.2:ENST00000457724.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	56	2	2.24546	3.595535	4.94561	0.0206502	0.0150263	0.122348	0.0994339
chr7	152356892	152356991	3680502	0	-	0.262626	[0,0.28]	chr7	341654	123	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000682301.1:ENST00000452749.2:ENST00000680867.1:ENST00000683800.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	56	2	2.24546	3.595535	4.94561	0.0206502	0.0150263	0.122348	0.0994339
chr1	160293899	160293996	571791	0	-	0.43299	(0.408,0.44]	chr1	69263	3	EXON_MRNA	EXON_MRNA:SS3_PROX:SS5_PROX:INTRON	COPA	ENSG00000122218.17	ENST00000241704.8:ENST00000696204.1:ENST00000696203.1:ENST00000696202.1:ENST00000649963.1:ENST00000696208.1:ENST00000696207.1:ENST00000696206.1:ENST00000696205.1:ENST00000649676.1:ENST00000368069.7:ENST00000647693.1:ENST00000649787.1:ENST00000650154.1:ENST00000647799.1:ENST00000648805.1:ENST00000648280.1:ENST00000647683.1:ENST00000649231.1:ENST00000648501.1:ENST00000696209.1:ENST00000696210.1:ENST00000696211.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	34	2	2.96007	3.595515	4.23096	0.0278028	0.00753901	0.123904	0.0773151
chr18	9223195	9223295	6869805	0	+	0.52	(0.515,0.57]	chr18	680611	8	INTRON	INTRON	ANKRD12	ENSG00000101745.17	ENST00000262126.9:ENST00000540578.6:ENST00000400020.7:ENST00000546007.6:ENST00000359158.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	17	428	2	3.46655	3.595465	3.72438	2.59621e-7	1.82759e-9	2.73104e-4	1.18087e-5
chr1	32632645	32632745	415535	0	-	0.26	[0,0.28]	chr1	50125	3	SS3_PROX	SS3_PROX:INTRON	ZBTB8OS	ENSG00000176261.16	ENST00000341885.6:ENST00000468695.6:ENST00000492007.6:ENST00000373506.8:ENST00000436661.6:ENST00000473294.7:ENST00000373501.6:ENST00000498691.5:ENST00000476493.6:ENST00000465588.2:ENST00000483138.5:ENST00000479075.6:ENST00000473383.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	41	2	2.36637	3.59535	4.82433	0.0500615	0.0200334	0.17488	0.109608
chr11	33134012	33134112	4940698	0	-	0.28	[0,0.28]	chr11	462854	252	INTRON	INTRON	CSTF3	ENSG00000176102.13	ENST00000323959.9:ENST00000524827.6	protein_coding	protein_coding	protein_coding	protein_coding	1	41	2	2.36637	3.59535	4.82433	0.0500615	0.0200334	0.17488	0.109608
chr3	177187876	177187976	1872353	0	-	0.2	[0,0.28]	chr3	187438	166	INTRON	INTRON	TBL1XR1	ENSG00000177565.18	ENST00000457928.7:ENST00000430069.5:ENST00000673974.1:ENST00000352800.10:ENST00000422442.6:ENST00000428970.5:ENST00000424913.5:ENST00000437738.5:ENST00000431421.5:ENST00000635794.1:ENST00000630796.2:ENST00000450267.5:ENST00000630833.2:ENST00000431674.5:ENST00000422066.5:ENST00000443315.5:ENST00000627825.2:ENST00000427349.5:ENST00000413084.5:ENST00000637137.1:ENST00000491623.2:ENST00000637544.1:ENST00000636187.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	41	2	2.36637	3.59535	4.82433	0.0500615	0.0200334	0.17488	0.109608
chr9	122327868	122327967	4194745	0	+	0.222222	[0,0.28]	chr9	382709	54	UTR3	UTR3:EXON_MRNA	MRRF	ENSG00000148187.18	ENST00000344641.8	protein_coding	protein_coding	protein_coding	protein_coding	1	41	2	2.36637	3.59535	4.82433	0.0500615	0.0200334	0.17488	0.109608
chr11	75453849	75453944	4990369	0	-	0.273684	[0,0.28]	chr11	471572	5	INTRON	INTRON	GDPD5	ENSG00000158555.15	ENST00000336898.8:ENST00000529721.5:ENST00000533784.5:ENST00000527820.5:ENST00000443276.6:ENST00000527322.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	68	2	2.02929	3.595295	5.1613	0.0189138	0.00866441	0.118303	0.0787025
chr1	156128930	156129029	230565	0	+	0.545455	(0.515,0.57]	chr1	27175	16	INTRON	INTRON	LMNA	ENSG00000160789.24	ENST00000502751.5:ENST00000368301.6:ENST00000676385.2:ENST00000675939.1:ENST00000675667.1:ENST00000675989.1:ENST00000676283.1:ENST00000674720.1:ENST00000496738.6:ENST00000674518.1:ENST00000676208.1:ENST00000674600.1:ENST00000675874.1:ENST00000676434.1:ENST00000684195.1:ENST00000683032.1:ENST00000682650.1:ENST00000361308.9:ENST00000368300.9:ENST00000675881.1:ENST00000675455.1:ENST00000677389.1:ENST00000470199.2:ENST00000469565.6:ENST00000368299.7:ENST00000502357.5:ENST00000448611.6:ENST00000515459.5:ENST00000675431.1:ENST00000368297.5:ENST00000504687.6:ENST00000473598.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	31	2	2.98677	3.59529	4.20381	0.0189208	0.00632549	0.108861	0.0722266
chr1	203803416	203803516	296758	0	+	0.52	(0.515,0.57]	chr1	34133	4	SS5_PROX	SS5_PROX:INTRON	ZC3H11A:ZBED6	ENSG00000058673.17:ENSG00000257315.3	ENST00000367210.3:ENST00000453771.5:ENST00000432282.5:ENST00000638800.1:ENST00000367214.5:ENST00000639812.1:ENST00000367212.7:ENST00000332127.8:ENST00000550078.2:ENST00000495527.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	31	2	2.98677	3.59529	4.20381	0.0189208	0.00632549	0.108861	0.0722266
chr12	42338058	42338157	5118338	0	+	0.535354	(0.515,0.57]	chr12	482920	17	INTRON	INTRON	PPHLN1	ENSG00000134283.18	ENST00000549190.5:ENST00000337898.10:ENST00000395580.7:ENST00000610488.4:ENST00000619544.4:ENST00000613154.4:ENST00000549774.5:ENST00000551723.5:ENST00000552429.5:ENST00000395568.6:ENST00000256678.12:ENST00000358314.12:ENST00000449194.6:ENST00000552761.5:ENST00000551406.5:ENST00000317560.13:ENST00000432191.6:ENST00000552202.5:ENST00000550535.5:ENST00000546750.5:ENST00000547847.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	31	2	2.98677	3.59529	4.20381	0.0189208	0.00632549	0.108861	0.0722266
chr8	129503755	129503855	4060319	0	-	0.22	[0,0.28]	chr8	369642	86	INTRON	INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1:ENST00000676273.1:ENST00000667643.1:ENST00000668791.1:ENST00000663716.1:ENST00000663572.1:ENST00000676148.1:ENST00000667962.1:ENST00000674877.1:ENST00000675316.1:ENST00000674656.1:ENST00000446592.7:ENST00000667341.1:ENST00000675186.1:ENST00000652971.1:ENST00000661447.1:ENST00000674863.1:ENST00000675498.1:ENST00000675527.1:ENST00000676108.1:ENST00000657647.1:ENST00000675589.1:ENST00000675913.1:ENST00000675109.1:ENST00000671632.1:ENST00000671311.1:ENST00000676099.1:ENST00000660652.1:ENST00000675522.1:ENST00000675183.1:ENST00000658861.1:ENST00000663991.1:ENST00000675044.1:ENST00000675435.1:ENST00000674639.1:ENST00000676069.1:ENST00000675532.1:ENST00000674762.1:ENST00000523151.6:ENST00000675948.1:ENST00000665364.1:ENST00000657251.1:ENST00000675166.1:ENST00000674883.1:ENST00000675867.1:ENST00000674580.1:ENST00000675393.1:ENST00000520048.1:ENST00000674906.1:ENST00000676030.1:ENST00000670588.1:ENST00000675072.1:ENST00000664936.1:ENST00000652914.1:ENST00000657069.1	lncRNA	lncRNA	lncRNA	lncRNA	4	173	2	2.96301	3.5951250000000003	4.22724	8.83215e-4	5.69854e-5	0.0273034	0.00617188
chr15	42844329	42844429	6158237	0	-	0.49	(0.476,0.515]	chr15	586277	35	INTRON	INTRON	TTBK2	ENSG00000128881.18	ENST00000267890.11:ENST00000567840.5:ENST00000567274.5:ENST00000564431.5:ENST00000562880.5:ENST00000566931.1	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	2.28264	3.595125	4.90761	0.0534132	0.00386428	0.179876	0.0542786
chr6	20446672	20446772	2827897	0	+	0.49	(0.476,0.515]	chr6	265583	66	INTRON	INTRON	E2F3	ENSG00000112242.16	ENST00000346618.8:ENST00000535432.2	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	2.28264	3.595125	4.90761	0.0534132	0.00386428	0.179876	0.0542786
chr1	173867525	173867622	587088	0	-	0.505155	(0.476,0.515]	chr1	70638	6	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GAS5	ENSG00000234741.9	ENST00000687189.1:ENST00000689238.1:ENST00000687549.1:ENST00000687435.1:ENST00000687987.1:ENST00000686995.1:ENST00000689958.1:ENST00000687063.1:ENST00000689895.1:ENST00000690228.1:ENST00000688573.1:ENST00000412059.6:ENST00000685107.1:ENST00000449289.6:ENST00000691213.1:ENST00000436285.6:ENST00000436656.6:ENST00000422008.6:ENST00000691137.1:ENST00000450589.6:ENST00000448718.6:ENST00000693348.1:ENST00000690349.1:ENST00000690761.1:ENST00000687022.1:ENST00000686878.1:ENST00000430245.5:ENST00000422183.6:ENST00000442067.6:ENST00000693450.1:ENST00000690448.1:ENST00000416952.6:ENST00000688895.1:ENST00000687710.1:ENST00000693030.1:ENST00000692671.1:ENST00000688557.1:ENST00000456812.7:ENST00000431268.5:ENST00000455838.6:ENST00000449589.6:ENST00000444470.6:ENST00000693469.1:ENST00000685758.1:ENST00000458220.2:ENST00000687409.1:ENST00000688952.1:ENST00000689860.1:ENST00000686918.1:ENST00000691056.1:ENST00000689469.1:ENST00000685039.1:ENST00000414075.6:ENST00000692994.1:ENST00000691982.1:ENST00000690172.1:ENST00000686460.1:ENST00000691712.1:ENST00000685159.1:ENST00000685008.1:ENST00000452197.5:ENST00000454068.5:ENST00000650796.1:ENST00000451607.5:ENST00000693521.1:ENST00000690941.1:ENST00000693459.1:ENST00000686231.1:ENST00000684949.1:ENST00000425771.6:ENST00000432536.5:ENST00000456293.5:ENST00000443799.5:ENST00000421068.5	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	5	173	2	3.32932	3.59512	3.86092	1.60666e-4	1.7778e-6	0.0109124	8.96525e-4
chr10	77840487	77840586	4653920	0	-	0.525253	(0.515,0.57]	chr10	428726	42	INTRON	INTRON	DLG5	ENSG00000151208.17	ENST00000372391.7:ENST00000475613.6:ENST00000468332.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	32	2	2.34087	3.595115	4.84936	0.0469761	0.00146032	0.151917	0.0349875
chr2	32400463	32400562	731216	0	+	0.545455	(0.515,0.57]	chr2	84304	45	INTRON	INTRON	BIRC6	ENSG00000115760.15	ENST00000421745.7:ENST00000648282.1:ENST00000466527.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	32	2	2.34087	3.595115	4.84936	0.0469761	0.00146032	0.151917	0.0349875
chr20	32369423	32369523	7255934	0	+	0.52	(0.515,0.57]	chr20	737065	3	SS5_PROX	SS5_PROX:INTRON	ASXL1	ENSG00000171456.21	ENST00000651418.1:ENST00000375687.10:ENST00000613218.4:ENST00000646367.1:ENST00000644587.1:ENST00000620121.4:ENST00000645337.1:ENST00000649901.1:ENST00000646985.1:ENST00000645035.1:ENST00000497249.6:ENST00000643168.1:ENST00000375689.5:ENST00000306058.9:ENST00000555343.2:ENST00000645688.1:ENST00000642676.1:ENST00000470145.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	32	2	2.34087	3.595115	4.84936	0.0469761	0.00146032	0.151917	0.0349875
chr22	19954349	19954449	7477530	0	+	0.54	(0.515,0.57]	chr22	762570	4	SS5_PROX	SS5_PROX:INTRON	COMT	ENSG00000093010.15	ENST00000676678.1:ENST00000403184.5:ENST00000361682.11:ENST00000403710.5:ENST00000407537.5:ENST00000467943.5:ENST00000678868.1:ENST00000678769.1:ENST00000428707.2:ENST00000412786.5:ENST00000207636.9:ENST00000406520.7:ENST00000678255.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	32	2	2.34087	3.595115	4.84936	0.0469761	0.00146032	0.151917	0.0349875
chr5	71476965	71477065	2383791	0	+	0.53	(0.515,0.57]	chr5	229887	61	INTRON	INTRON	BDP1	ENSG00000145734.20	ENST00000358731.9:ENST00000508917.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	32	2	2.34087	3.595115	4.84936	0.0469761	0.00146032	0.151917	0.0349875
chr13	33834148	33834248	5467516	0	+	0.33	(0.32,0.35]	chr13	523958	24	INTRON	INTRON	RFC3	ENSG00000133119.13	ENST00000434425.5:ENST00000380071.8:ENST00000616236.1	protein_coding	protein_coding	protein_coding	protein_coding	4	76	2	1.80306	3.5949500000000003	5.38684	0.0246393	5.01164e-4	0.12011	0.020217099999999998
chr11	70278393	70278492	4820487	0	+	0.383838	(0.378,0.408]	chr11	449381	56	INTRON	INTRON	PPFIA1	ENSG00000131626.19	ENST00000253925.12:ENST00000389547.7:ENST00000532504.5:ENST00000530746.1:ENST00000532024.1:ENST00000648755.1:ENST00000644155.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	55	2	2.18512	3.594855	5.00459	0.00902136	0.00371142	0.0851259	0.0535094
chr22	20861539	20861639	7480213	0	+	0.4	(0.378,0.408]	chr22	763060	15	INTRON	INTRON	SNAP29	ENSG00000099940.12	ENST00000215730.12:ENST00000490458.1:ENST00000439214.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	76	2	3.32016	3.594835	3.86951	0.00268328	1.55755e-4	0.0464781	0.0106835
chr6	170362613	170362713	3036924	0	+	0.31	(0.28,0.32]	chr6	283078	39	INTRON	INTRON	FAM120B	ENSG00000112584.14	ENST00000630384.2:ENST00000537664.5:ENST00000476287.4:ENST00000625626.1	protein_coding	protein_coding	protein_coding	protein_coding	4	72	2	1.93579	3.594835	5.25388	0.0139701	0.00385849	0.10247	0.0542786
chr1	146940065	146940163	211589	0	+	0.357143	(0.35,0.378]	chr1	23266	7	INTRON	INTRON	NBPF12	ENSG00000268043.8	ENST00000617931.4	protein_coding	protein_coding	protein_coding	protein_coding	1	40	2	2.89003	3.5948200000000003	4.29961	0.0158483	0.0122391	0.109464	0.0910127
chr3	47834210	47834310	1420291	0	+	0.52	(0.515,0.57]	chr3	149238	32	INTRON	INTRON	DHX30	ENSG00000132153.15	ENST00000395745.6:ENST00000445061.6:ENST00000441384.5:ENST00000348968.8:ENST00000446256.6:ENST00000619982.4:ENST00000457607.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	42	2	1.86007	3.5948200000000003	5.32957	0.0526611	4.06834e-4	0.178401	0.0185763
chr6	12042341	12042440	2814529	0	+	0.545455	(0.515,0.57]	chr6	264800	32	INTRON	INTRON	HIVEP1	ENSG00000095951.17	ENST00000491710.5:ENST00000487103.5:ENST00000379388.7:ENST00000627968.2:ENST00000541134.5:ENST00000442081.6:ENST00000478545.1	protein_coding	protein_coding	protein_coding	protein_coding	2	42	2	1.86007	3.5948200000000003	5.32957	0.0526611	4.06834e-4	0.178401	0.0185763
chr14	50143299	50143396	5887673	0	-	0.350515	(0.35,0.378]	chr14	558906	29	INTRON	INTRON	SOS2	ENSG00000100485.12	ENST00000216373.10:ENST00000543680.5	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	2.79643	3.59473	4.39303	0.0237246	0.013543	0.118716	0.101363
chr15	52052835	52052935	6029361	0	+	0.36	(0.35,0.378]	chr15	574447	23	INTRON	INTRON	MAPK6	ENSG00000069956.14	ENST00000691380.1:ENST00000681888.1:ENST00000261845.7:ENST00000680066.1:ENST00000680777.1:ENST00000680652.1	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	2.79643	3.59473	4.39303	0.0237246	0.013543	0.118716	0.101363
chr3	16332022	16332122	1375556	0	+	0.36	(0.35,0.378]	chr3	145005	261	INTRON	INTRON	OXNAD1	ENSG00000154814.14	ENST00000605932.5:ENST00000435829.6:ENST00000606098.1	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	2.79643	3.59473	4.39303	0.0237246	0.013543	0.118716	0.101363
chrX	13334748	13334847	7622297	0	+	0.424242	(0.408,0.44]	chrX	780326	9	EXON_LNCRNA	EXON_LNCRNA	LINC01203	ENSG00000226985.7	ENST00000669963.1:ENST00000661545.1:ENST00000659526.1:ENST00000656410.1:ENST00000661104.1:ENST00000456091.2:ENST00000655502.1:ENST00000671651.1	lncRNA	lncRNA	lncRNA	lncRNA	12	364	2	3.27791	3.59473	3.91155	8.92461e-7	1.35364e-7	5.37278e-4	1.74875e-4
chrX	111734067	111734167	7702575	0	+	0.37	(0.35,0.378]	chrX	788329	3	SS3_PROX	SS3_PROX:INTRON	ALG13	ENSG00000101901.12	ENST00000394780.8:ENST00000251943.8:ENST00000610588.4:ENST00000621367.4:ENST00000624161.3:ENST00000636363.1:ENST00000495283.5:ENST00000623144.3:ENST00000470971.5:ENST00000623148.3:ENST00000436609.5:ENST00000486578.4:ENST00000460092.2:ENST00000635824.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	35	2	2.79643	3.59473	4.39303	0.0237246	0.013543	0.118716	0.101363
chr5	66172746	66172846	2372786	0	+	0.26	[0,0.28]	chr5	228690	14	INTRON	INTRON	SREK1	ENSG00000153914.16	ENST00000334121.11:ENST00000520953.5:ENST00000522912.5:ENST00000380918.7:ENST00000284041.7:ENST00000519259.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	67	2	1.84046	3.5946800000000003	5.3489	0.0335889	0.00514751	0.146709	0.062965
chr16	12755905	12756005	6447380	0	-	0.53	(0.515,0.57]	chr16	621153	505	INTRON	INTRON	CPPED1	ENSG00000103381.12	ENST00000381774.9:ENST00000433677.6:ENST00000261660.4	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	2.68833	3.5946749999999996	4.50102	0.0184931	0.00510768	0.108861	0.0646039
chr19	19424415	19424515	7035533	0	+	0.55	(0.515,0.57]	chr19	701433	180	INTRON	INTRON	GATAD2A	ENSG00000167491.18	ENST00000494516.6:ENST00000360315.7:ENST00000609040.5:ENST00000417582.6:ENST00000683918.1:ENST00000448576.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	32	2	2.68833	3.5946749999999996	4.50102	0.0184931	0.00510768	0.108861	0.0646039
chr22	28566858	28566958	7571804	0	-	0.53	(0.515,0.57]	chr22	774287	1239	INTRON	INTRON	TTC28	ENSG00000100154.15	ENST00000397906.7	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	2.68833	3.5946749999999996	4.50102	0.0184931	0.00510768	0.108861	0.0646039
chr8	96255567	96255666	3995129	0	-	0.444444	(0.44,0.476]	chr8	365871	41	INTRON	INTRON	MTERF3	ENSG00000156469.9	ENST00000523821.5:ENST00000287025.4:ENST00000522822.5:ENST00000524341.5	protein_coding	protein_coding	protein_coding	protein_coding	2	48	2	1.83899	3.594655	5.35032	0.0589734	3.02713e-4	0.167915	0.0155054
chr11	58589175	58589275	4793844	0	+	0.47	(0.44,0.476]	chr11	443838	39	INTRON	INTRON	ZFP91	ENSG00000186660.15	ENST00000316059.7	protein_coding	protein_coding	protein_coding	protein_coding	2	73	2	3.43305	3.5945650000000002	3.75608	0.00159668	2.6487e-4	0.0364566	0.0144071
chr8	99292946	99293046	3814081	0	+	0.32	(0.28,0.32]	chr8	353192	173	INTRON	INTRON	VPS13B	ENSG00000132549.20	ENST00000496144.5:ENST00000683334.1:ENST00000357162.7:ENST00000358544.7:ENST00000683619.1:ENST00000683869.1:ENST00000682153.1:ENST00000682358.1:ENST00000682145.1:ENST00000355155.6:ENST00000682234.1:ENST00000683486.1:ENST00000522802.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	282	2	2.56602	3.594565	4.62311	0.00326427	9.36862e-9	0.0508595	3.35807e-5
chr1	224951271	224951371	322568	0	+	0.43	(0.408,0.44]	chr1	37105	211	INTRON	INTRON	DNAH14	ENSG00000185842.16	ENST00000445597.6:ENST00000430092.5:ENST00000366850.7:ENST00000400952.7:ENST00000682510.1:ENST00000366849.5:ENST00000498360.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	34	2	2.2957	3.594485	4.89327	0.0516458	0.00458906	0.176696	0.0595107
chr17	30846408	30846507	6590573	0	+	0.525253	(0.515,0.57]	chr17	640948	11	INTRON	INTRON	ATAD5	ENSG00000176208.9	ENST00000321990.5:ENST00000578295.5:ENST00000585133.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:non_stop_decay	1	31	2	2.35125	3.5944450000000003	4.83764	0.0436431	0.00279527	0.162255	0.0469265
chr17	41887198	41887298	6769977	0	-	0.53	(0.515,0.57]	chr17	666484	2	SS5_PROX	SS5_PROX:INTRON	ACLY	ENSG00000131473.17	ENST00000590151.5:ENST00000352035.7:ENST00000353196.5:ENST00000537919.5:ENST00000393896.6	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	2.35125	3.5944450000000003	4.83764	0.0436431	0.00279527	0.162255	0.0469265
chrX	124054939	124055037	7717700	0	+	0.530612	(0.515,0.57]	chrX	789547	32	INTRON	INTRON	STAG2	ENSG00000101972.20	ENST00000218089.13:ENST00000455404.5:ENST00000483575.5:ENST00000687810.1:ENST00000687071.1:ENST00000469481.1:ENST00000371160.5:ENST00000687852.1:ENST00000371145.8:ENST00000692982.1:ENST00000371157.7:ENST00000691035.1:ENST00000686802.1:ENST00000691383.1:ENST00000686127.1:ENST00000371144.7:ENST00000466748.5:ENST00000471107.1:ENST00000693144.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	31	2	2.35125	3.5944450000000003	4.83764	0.0436431	0.00279527	0.162255	0.0469265
chr19	2204950	2205048	6996590	0	+	0.459184	(0.44,0.476]	chr19	693473	18	INTRON	INTRON	DOT1L	ENSG00000104885.19	ENST00000398665.8:ENST00000686010.1	protein_coding	protein_coding	protein_coding	protein_coding	8	242	2	3.33021	3.594425	3.85864	6.39438e-6	7.81519e-7	0.00191462	4.97116e-4
chr1	213184877	213184977	312046	0	+	0.37	(0.35,0.378]	chr1	35957	80	INTRON	INTRON	RPS6KC1	ENSG00000136643.12	ENST00000615329.4:ENST00000543354.5:ENST00000614059.4:ENST00000543470.5:ENST00000366960.8:ENST00000366959.4:ENST00000490299.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	36	2	2.99173	3.5944149999999997	4.1971	0.0367539	0.00713365	0.138959	0.0756118
chr15	41062512	41062611	6152685	0	-	0.363636	(0.35,0.378]	chr15	585356	22	INTRON	INTRON	INO80	ENSG00000128908.18	ENST00000648947.1:ENST00000401393.7:ENST00000558357.6:ENST00000559995.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	36	2	2.99173	3.5944149999999997	4.1971	0.0367539	0.00713365	0.138959	0.0756118
chr1	35084134	35084234	67954	0	+	0.33	(0.32,0.35]	chr1	8657	43	INTRON	INTRON	ZMYM1	ENSG00000197056.11	ENST00000650449.1:ENST00000611874.4:ENST00000417119.5:ENST00000466390.5:ENST00000359858.9:ENST00000488455.5:ENST00000373330.1:ENST00000373329.5:ENST00000475654.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	49	2	2.35591	3.5943899999999998	4.83287	0.0128129	0.0095071	0.0990564	0.0817766
chr15	42500326	42500426	6009647	0	+	0.37	(0.35,0.378]	chr15	572143	40	INTRON	INTRON	SNAP23	ENSG00000092531.10	ENST00000568745.5:ENST00000561526.5:ENST00000568227.5:ENST00000568451.5:ENST00000563765.5:ENST00000349777.5:ENST00000249647.8:ENST00000564153.5:ENST00000566141.5:ENST00000567094.5:ENST00000566327.5:ENST00000568331.5:ENST00000563451.1:ENST00000626061.2:ENST00000627440.2:ENST00000566035.5:ENST00000568859.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	48	2	2.54421	3.5943899999999998	4.64457	0.012652	0.00630238	0.0926667	0.0722266
chr17	62439722	62439821	6652525	0	+	0.363636	(0.35,0.378]	chr17	649248	41	INTRON	INTRON	METTL2A	ENSG00000087995.16	ENST00000333483.14:ENST00000616852.1:ENST00000311506.10:ENST00000582027.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	38	2	2.60341	3.5943899999999998	4.58537	0.0275785	0.00703328	0.123904	0.0754576
chr3	169787952	169788050	1556455	0	+	0.377551	(0.35,0.378]	chr3	161199	14	UTR3	UTR3:EXON_MRNA	MYNN	ENSG00000085274.16	ENST00000349841.10:ENST00000544106.5	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	2.60341	3.5943899999999998	4.58537	0.0275785	0.00703328	0.123904	0.0754576
chr6	107918208	107918308	3182443	0	-	0.37	(0.35,0.378]	chr6	296444	44	INTRON	INTRON	SEC63	ENSG00000025796.14	ENST00000369002.9:ENST00000429168.1:ENST00000484803.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	48	2	2.54421	3.5943899999999998	4.64457	0.012652	0.00630238	0.0926667	0.0722266
chr1	46312100	46312198	96624	0	+	0.510204	(0.476,0.515]	chr1	12977	14	INTRON	INTRON	UQCRH	ENSG00000173660.12	ENST00000311672.10:ENST00000489056.5:ENST00000496387.5:ENST00000460947.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	130	2	3.54729	3.5943699999999996	3.64145	7.29001e-5	2.67082e-5	0.00767614	0.00407562
chr15	65791709	65791809	6209791	0	-	0.58	(0.57,1]	chr15	592618	3	SS5_PROX	SS5_PROX:INTRON	DENND4A	ENSG00000174485.16	ENST00000443035.8:ENST00000431932.6:ENST00000564674.5:ENST00000568515.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	83	2	3.25513	3.594245	3.93336	2.35468e-5	1.31607e-6	0.00396325	6.75311e-4
chr12	49496732	49496832	5134256	0	+	0.36	(0.35,0.378]	chr12	484035	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	SPATS2	ENSG00000123352.18	ENST00000549412.5:ENST00000552918.6:ENST00000553127.5:ENST00000321898.10:ENST00000552557.5:ENST00000552655.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	35	2	2.39746	3.594125	4.79079	0.041314	0.00846427	0.161534	0.0776969
chr3	125280741	125280840	1806156	0	-	0.353535	(0.35,0.378]	chr3	181426	11	INTRON	INTRON	ZNF148	ENSG00000163848.20	ENST00000360647.9:ENST00000468369.5:ENST00000484491.5:ENST00000492394.5:ENST00000485866.5:ENST00000497929.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	35	2	2.39746	3.594125	4.79079	0.041314	0.00846427	0.161534	0.0776969
chr4	47870756	47870855	2134869	0	-	0.353535	(0.35,0.378]	chr4	210399	75	INTRON	INTRON	NFXL1	ENSG00000170448.12	ENST00000329043.7:ENST00000464756.6:ENST00000381538.7:ENST00000507489.2:ENST00000502448.5:ENST00000507131.5:ENST00000508115.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	35	2	2.39746	3.594125	4.79079	0.041314	0.00846427	0.161534	0.0776969
chr7	22857468	22857567	3288718	0	+	0.464646	(0.44,0.476]	chr7	305434	5	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	SNHG26	ENSG00000228649.10	ENST00000415611.8:ENST00000667557.1:ENST00000422542.4:ENST00000656301.1:ENST00000661147.1:ENST00000656687.2:ENST00000662021.1:ENST00000691516.1:ENST00000685098.1:ENST00000689892.1:ENST00000663057.1:ENST00000657608.1:ENST00000688000.1:ENST00000690219.1:ENST00000658124.1:ENST00000661582.1	lncRNA	lncRNA	lncRNA	lncRNA	7	216	2	3.40227	3.59408	3.78589	9.95733e-6	1.31948e-6	0.00245506	6.75843e-4
chr12	12232372	12232472	5270709	0	-	0.38	(0.378,0.408]	chr12	502401	286	INTRON	INTRON	LRP6	ENSG00000070018.9	ENST00000261349.9:ENST00000538239.5:ENST00000543091.1:ENST00000535731.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	37	2	2.13703	3.59397	5.05091	0.0797592	0.00118558	0.19979	0.031662
chr16	74451365	74451464	6523740	0	-	0.383838	(0.378,0.408]	chr16	631695	41	UTR3	UTR3:EXON_MRNA	GLG1	ENSG00000090863.12	ENST00000205061.9:ENST00000422840.7	protein_coding	protein_coding	protein_coding	protein_coding	1	37	2	2.13703	3.59397	5.05091	0.0797592	0.00118558	0.19979	0.031662
chr4	184732227	184732322	2304880	0	-	0.378947	(0.378,0.408]	chr4	222970	9	INTRON	INTRON	CENPU	ENSG00000151725.12	ENST00000281453.10:ENST00000510146.5:ENST00000514781.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	37	2	2.13703	3.59397	5.05091	0.0797592	0.00118558	0.19979	0.031662
chr7	121093108	121093207	3394688	0	+	0.40404	(0.378,0.408]	chr7	317710	161	INTRON	INTRON	CPED1	ENSG00000106034.18	ENST00000310396.10:ENST00000428526.5:ENST00000450913.6:ENST00000520801.5:ENST00000423795.5:ENST00000443817.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	37	2	2.13703	3.59397	5.05091	0.0797592	0.00118558	0.19979	0.031662
chr14	95534210	95534307	5965461	0	-	0.474227	(0.44,0.476]	chr14	566636	7	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	SNHG10	ENSG00000247092.8	ENST00000667310.2:ENST00000671157.2:ENST00000667668.1:ENST00000658932.2:ENST00000500370.2:ENST00000554169.2:ENST00000693219.1:ENST00000685307.1:ENST00000691619.1:ENST00000689247.1:ENST00000687146.1:ENST00000660378.2:ENST00000689758.1:ENST00000690868.1:ENST00000693520.1:ENST00000685703.1:ENST00000690961.1:ENST00000689823.1:ENST00000689442.1:ENST00000688138.1:ENST00000693718.1:ENST00000688462.1:ENST00000553559.1:ENST00000555866.5:ENST00000691606.1:ENST00000688965.1	lncRNA	lncRNA	lncRNA	lncRNA	15	424	2	3.06476	3.593935	4.12311	3.2395e-6	5.38395e-9	0.00128387	2.42555e-5
chr12	71629906	71630002	5363227	0	-	0.270833	[0,0.28]	chr12	511949	2	SS3_PROX	SS3_PROX:INTRON	ZFC3H1	ENSG00000133858.17	ENST00000378743.9:ENST00000552994.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	42	2	2.80396	3.593915	4.38387	0.0501911	0.0161429	0.156383	0.109464
chr17	66353841	66353941	6662810	0	+	0.45	(0.44,0.476]	chr17	650324	139	INTRON	INTRON	PRKCA	ENSG00000154229.12	ENST00000413366.8:ENST00000578063.5:ENST00000284384.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	61	2	1.88483	3.593865	5.3029	0.0149825	0.00102616	0.107704	0.029231300000000002
chr17	31960158	31960258	6595909	0	+	0.41	(0.408,0.44]	chr17	641554	121	INTRON	INTRON	SUZ12	ENSG00000178691.11	ENST00000322652.10:ENST00000580398.1	protein_coding	protein_coding	protein_coding	protein_coding	2	48	2	2.00228	3.59382	5.18536	0.0389732	6.17381e-4	0.143072	0.0223951
chr19	3622988	3623087	7118298	0	-	0.444444	(0.44,0.476]	chr19	715874	18	INTRON	INTRON	CACTIN	ENSG00000105298.14	ENST00000429344.7:ENST00000585942.5:ENST00000248420.9:ENST00000221899.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	33	2	2.66433	3.593515	4.5227	0.0194358	0.0128818	0.119831	0.0926667
chr2	62367640	62367740	791006	0	+	0.45	(0.44,0.476]	chr2	88716	56	INTRON	INTRON	ENSG00000228541	ENSG00000228541.2	ENST00000689590.1:ENST00000687402.1	lncRNA	lncRNA	lncRNA	lncRNA	1	33	2	2.66433	3.593515	4.5227	0.0194358	0.0128818	0.119831	0.0926667
chr2	95102500	95102597	1177418	0	-	0.453608	(0.44,0.476]	chr2	125626	9	EXON_MRNA	EXON_MRNA:INTRON	MRPS5	ENSG00000289685.1	ENST00000272418.7:ENST00000345084.10:ENST00000695437.1:ENST00000695436.1:ENST00000695435.1:ENST00000695434.1:ENST00000695433.1:ENST00000695432.1:ENST00000695439.1:ENST00000461916.6:ENST00000475895.6:ENST00000482568.1:ENST00000695440.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	33	2	2.66433	3.593515	4.5227	0.0194358	0.0128818	0.119831	0.0926667
chr1	92585220	92585320	506149	0	-	0.45	(0.44,0.476]	chr1	59781	211	INTRON	INTRON	EVI5	ENSG00000067208.16	ENST00000370331.5:ENST00000540033.2:ENST00000684568.2:ENST00000491940.5	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	2.58033	3.5934	4.60647	0.0247511	0.0102339	0.131869	0.0850389
chr10	13345816	13345912	4558684	0	-	0.458333	(0.44,0.476]	chr10	420823	4	INTRON	INTRON	SEPHS1	ENSG00000086475.15	ENST00000327347.10:ENST00000545675.5:ENST00000378614.8:ENST00000413411.5	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	2.58033	3.5934	4.60647	0.0247511	0.0102339	0.131869	0.0850389
chr19	40359042	40359142	7068989	0	+	0.45	(0.44,0.476]	chr19	706105	99	INTRON	INTRON	PLD3	ENSG00000105223.20	ENST00000599685.5:ENST00000600479.5:ENST00000392032.6:ENST00000598962.5:ENST00000409419.5:ENST00000409587.5:ENST00000602131.5:ENST00000594085.5:ENST00000409735.9:ENST00000356508.9:ENST00000600948.5:ENST00000594908.5:ENST00000596682.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	33	2	2.58033	3.5934	4.60647	0.0247511	0.0102339	0.131869	0.0850389
chr2	182936074	182936174	1284978	0	-	0.47	(0.44,0.476]	chr2	135301	3	INTRON	INTRON	NCKAP1	ENSG00000061676.15	ENST00000361354.9:ENST00000360982.2:ENST00000478449.5:ENST00000471640.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	33	2	2.58033	3.5934	4.60647	0.0247511	0.0102339	0.131869	0.0850389
chr15	65772778	65772877	6209601	0	-	0.373737	(0.35,0.378]	chr15	592617	55	INTRON	INTRON	DENND4A	ENSG00000174485.16	ENST00000443035.8:ENST00000431932.6:ENST00000564674.5:ENST00000568515.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	57	2	2.20096	3.593285	4.98561	0.0087123	0.00474226	0.0844834	0.0600445
chr2	38341476	38341576	1098984	0	-	0.51	(0.476,0.515]	chr2	117856	221	INTRON	INTRON	ATL2	ENSG00000119787.14	ENST00000378954.9:ENST00000406122.5:ENST00000405384.6:ENST00000402054.5:ENST00000419554.6:ENST00000651368.1:ENST00000452935.6:ENST00000449130.5:ENST00000443098.5:ENST00000456736.5:ENST00000474535.2:ENST00000472097.1:ENST00000451483.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	75	2	3.10264	3.593275	4.08391	0.00543163	4.74551e-5	0.0645052	0.00562068
chr16	84777998	84778097	6410706	0	+	0.292929	(0.28,0.32]	chr16	615352	24	INTRON	INTRON	USP10	ENSG00000103194.16	ENST00000540269.6:ENST00000219473.12:ENST00000570191.5:ENST00000563048.5:ENST00000569925.1:ENST00000567526.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	52	2	2.38391	3.59323	4.80255	0.0137406	0.0122525	0.0969406	0.0949306
chr4	7010152	7010250	1923644	0	+	0.306122	(0.28,0.32]	chr4	193137	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TBC1D14	ENSG00000132405.19	ENST00000448507.5:ENST00000409757.9:ENST00000410031.5:ENST00000451522.6:ENST00000446947.6:ENST00000439515.2	protein_coding	protein_coding	protein_coding	protein_coding	2	52	2	2.38391	3.59323	4.80255	0.0137406	0.0122525	0.0969406	0.0949306
chr12	50553813	50553913	5137638	0	+	0.43	(0.408,0.44]	chr12	484468	482	INTRON	INTRON	DIP2B	ENSG00000066084.13	ENST00000301180.10:ENST00000549620.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	36	2	2.18807	3.5932200000000005	4.99837	0.0708044	0.00131369	0.184528	0.0333932
chr9	131192387	131192482	4216319	0	+	0.368421	(0.35,0.378]	chr9	386652	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	NUP214	ENSG00000126883.19	ENST00000695497.1:ENST00000695498.1:ENST00000695496.1:ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000525980.5:ENST00000531929.5:ENST00000651334.1:ENST00000524578.6:ENST00000453861.6:ENST00000470765.5:ENST00000483497.6:ENST00000465486.6:ENST00000531600.1:ENST00000528114.1:ENST00000525384.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	56	2	1.87586	3.59322	5.31058	0.0268864	0.00160599	0.135275	0.0364977
chr1	179962412	179962511	267512	0	+	0.545455	(0.515,0.57]	chr1	31297	69	INTRON	INTRON	CEP350	ENSG00000135837.16	ENST00000491495.2:ENST00000367607.8	protein_coding	protein_coding	protein_coding	protein_coding	4	59	2	1.48539	3.593145	5.7009	0.0553982	2.61423e-5	0.165463	0.00402177
chr1	26726108	26726208	51472	0	+	0.38	(0.378,0.408]	chr1	6542	282	INTRON	INTRON	ARID1A	ENSG00000117713.21	ENST00000430799.7:ENST00000324856.13:ENST00000637465.1:ENST00000457599.6	protein_coding	protein_coding	protein_coding	protein_coding	3	102	2	2.92509	3.59311	4.26113	0.00167715	1.77623e-5	0.0370386	0.00320912
chr6	157628417	157628486	3014020	0	+	0.333333	(0.32,0.35]	chr6	281286	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS5_ADJ:SS3_PROX:SS5_PROX:INTRON	ZDHHC14	ENSG00000175048.17	ENST00000414563.6:ENST00000359775.10:ENST00000518214.5:ENST00000523468.5:ENST00000341375.12:ENST00000340347.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	114	2	3.07203	3.5930999999999997	4.11417	0.00109373	5.52952e-5	0.0304174	0.00609037
chr1	35083535	35083635	67948	0	+	0.28	[0,0.28]	chr1	8657	37	INTRON	INTRON	ZMYM1	ENSG00000197056.11	ENST00000650449.1:ENST00000611874.4:ENST00000417119.5:ENST00000466390.5:ENST00000359858.9:ENST00000488455.5:ENST00000373330.1:ENST00000373329.5:ENST00000475654.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	77	2	1.71089	3.593015	5.47514	0.0318277	0.00354561	0.14477	0.0529186
chr12	57381156	57381256	5338759	0	-	0.42	(0.408,0.44]	chr12	510710	398	INTRON	INTRON	R3HDM2	ENSG00000179912.21	ENST00000402412.6:ENST00000347140.7:ENST00000634871.1:ENST00000448732.1	protein_coding	protein_coding	protein_coding	protein_coding	3	58	2	1.83501	3.5929399999999996	5.35087	0.0323448	3.00323e-4	0.133003	0.0155054
chr7	103325356	103325454	3594132	0	-	0.489796	(0.476,0.515]	chr7	335513	4	INTRON	INTRON	DNAJC2	ENSG00000105821.15	ENST00000379263.8:ENST00000249270.11:ENST00000475065.5:ENST00000464253.5:ENST00000426036.6:ENST00000454277.5:ENST00000379257.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	57	2	1.69138	3.59286	5.49434	0.0481165	1.62782e-4	0.153019	0.0109774
chr16	22331434	22331523	6321896	0	+	0.359551	(0.35,0.378]	chr16	605285	1	EXON_MRNA	EXON_MRNA:INTRON	POLR3E	ENSG00000058600.16	ENST00000615879.4:ENST00000299853.10:ENST00000564209.5:ENST00000418581.6:ENST00000359210.8:ENST00000564750.5:ENST00000563282.1:ENST00000565117.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	47	2	1.9755	3.5928400000000003	5.21018	0.0398617	0.00228003	0.161534	0.0426265
chr1	247165956	247166056	683814	0	-	0.42	(0.408,0.44]	chr1	80174	57	INTRON	INTRON	ZNF124	ENSG00000196418.13	ENST00000472531.5:ENST00000491356.5:ENST00000543802.3:ENST00000340684.10:ENST00000491848.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	80	2	3.14706	3.5928199999999997	4.03858	0.00382411	1.05823e-4	0.0562562	0.00920724
chr16	3727322	3727421	6434503	0	-	0.242424	[0,0.28]	chr16	619389	24	UTR3	UTR3:EXON_MRNA	CREBBP	ENSG00000005339.15	ENST00000262367.10	protein_coding	protein_coding	protein_coding	protein_coding	1	45	2	2.20927	3.59273	4.97619	0.0794763	0.00535756	0.19979	0.0663076
chr2	176313927	176314027	925663	0	+	0.43	(0.408,0.44]	chr2	101688	92	INTRON	INTRON	MTX2	ENSG00000128654.14	ENST00000420864.5:ENST00000249442.11:ENST00000423461.6:ENST00000443241.5:ENST00000452865.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	48	2	1.94273	3.5927000000000002	5.24267	0.0456237	4.83767e-4	0.149888	0.0199261
chr21	44061058	44061158	7415526	0	+	0.29	(0.28,0.32]	chr21	755816	9	INTRON	INTRON	TRAPPC10	ENSG00000160218.13	ENST00000291574.9:ENST00000422875.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	52	2	1.83771	3.5926799999999997	5.34765	0.0591725	0.00287138	0.189982	0.0474836
chr10	92831357	92831457	4491441	0	+	0.22	[0,0.28]	chr10	413690	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	EXOC6	ENSG00000138190.17	ENST00000671701.1:ENST00000672817.1	protein_coding	protein_coding	protein_coding	protein_coding	1	45	2	2.27119	3.5926649999999998	4.91414	0.070351	0.0064519	0.184298	0.0730725
chr6	52365778	52365878	2875503	0	+	0.31	(0.28,0.32]	chr6	272897	29	INTRON	INTRON	PAQR8:EFHC1	ENSG00000170915.9:ENSG00000096093.16	ENST00000512121.1:ENST00000635984.1:ENST00000637849.1:ENST00000635760.1:ENST00000442253.3:ENST00000491749.2:ENST00000360726.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	58	2	2.22069	3.5926150000000003	4.96454	0.0243177	0.00344078	0.12011	0.0539802
chr18	2783470	2783568	6866201	0	+	0.265306	[0,0.28]	chr18	680190	8	EXON_MRNA	EXON_MRNA:INTRON	SMCHD1	ENSG00000101596.17	ENST00000320876.11:ENST00000688342.1:ENST00000577880.5:ENST00000584897.5:ENST00000686763.1:ENST00000686864.1:ENST00000688708.1:ENST00000645355.1:ENST00000688964.1:ENST00000685656.1:ENST00000689034.1:ENST00000642953.1:ENST00000689800.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	141	2	3.08395	3.592605	4.10126	0.00163044	1.06299e-4	0.0368492	0.00873918
chr21	32367439	32367532	7438552	0	-	0.430108	(0.408,0.44]	chr21	758899	3	INTRON	INTRON	URB1	ENSG00000142207.7	ENST00000382751.4	protein_coding	protein_coding	protein_coding	protein_coding	2	48	2	2.05947	3.592575	5.12568	0.0333232	7.90919e-4	0.134145	0.0258324
chr1	8720687	8720787	372813	0	-	0.41	(0.408,0.44]	chr1	43545	176	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000656437.1:ENST00000659924.1:ENST00000480342.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	36	2	2.6542	3.5925399999999996	4.53088	0.0227514	0.00669275	0.117618	0.0738715
chr16	70514134	70514234	6511829	0	-	0.44	(0.408,0.44]	chr16	630777	4	SS5_PROX	SS5_PROX:INTRON	COG4	ENSG00000103051.20	ENST00000564415.6:ENST00000323786.10:ENST00000530314.5:ENST00000393612.8:ENST00000674443.1:ENST00000482252.5:ENST00000562200.5:ENST00000564653.6:ENST00000534772.1:ENST00000530160.2:ENST00000524584.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	36	2	2.6542	3.5925399999999996	4.53088	0.0227514	0.00669275	0.117618	0.0738715
chr17	41973924	41974021	6610816	0	+	0.42268	(0.408,0.44]	chr17	643936	1	UTR3	UTR3:EXON_MRNA	CNP	ENSG00000173786.17	ENST00000472031.1:ENST00000393892.8:ENST00000393888.1:ENST00000486438.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	36	2	2.6542	3.5925399999999996	4.53088	0.0227514	0.00669275	0.117618	0.0738715
chr8	104553146	104553246	4014363	0	-	0.43	(0.408,0.44]	chr8	367439	208	INTRON	INTRON	LRP12	ENSG00000147650.12	ENST00000424843.6:ENST00000276654.10:ENST00000520770.1:ENST00000519675.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	36	2	2.6542	3.5925399999999996	4.53088	0.0227514	0.00669275	0.117618	0.0738715
chr10	74261815	74261915	4456877	0	+	0.35	(0.32,0.35]	chr10	411553	184	INTRON	INTRON	ADK	ENSG00000156110.15	ENST00000672429.1:ENST00000539909.6:ENST00000286621.7:ENST00000673352.1:ENST00000673310.1:ENST00000672920.1:ENST00000672394.1:ENST00000372734.5:ENST00000673027.1:ENST00000541550.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	36	2	2.56618	3.5925350000000003	4.61889	0.0274185	0.0166646	0.136498	0.102621
chr2	32400066	32400165	731212	0	+	0.343434	(0.32,0.35]	chr2	84304	41	INTRON	INTRON	BIRC6	ENSG00000115760.15	ENST00000421745.7:ENST00000648282.1:ENST00000466527.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	36	2	2.56618	3.5925350000000003	4.61889	0.0274185	0.0166646	0.136498	0.102621
chr2	241285683	241285782	1348269	0	-	0.333333	(0.32,0.35]	chr2	141648	127	INTRON	INTRON	HDLBP	ENSG00000115677.18	ENST00000310931.10:ENST00000391976.6:ENST00000428482.5:ENST00000430918.5:ENST00000441124.5:ENST00000413241.5:ENST00000423693.5:ENST00000425989.5:ENST00000420451.5:ENST00000417540.5:ENST00000462130.1:ENST00000496569.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	36	2	2.56618	3.5925350000000003	4.61889	0.0274185	0.0166646	0.136498	0.102621
chr6	4048515	4048615	2789976	0	+	0.34	(0.32,0.35]	chr6	263518	1	SS3_PROX	SS3_PROX:INTRON	PRPF4B	ENSG00000112739.17	ENST00000480058.5:ENST00000337659.11:ENST00000481109.5:ENST00000463634.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	36	2	2.56618	3.5925350000000003	4.61889	0.0274185	0.0166646	0.136498	0.102621
chr19	16648846	16648945	7150672	0	-	0.515152	(0.476,0.515]	chr19	722447	12	INTRON	INTRON	SMIM7	ENSG00000214046.9	ENST00000465250.6:ENST00000481671.6:ENST00000594662.5:ENST00000597781.5:ENST00000598278.5:ENST00000593409.5:ENST00000487803.5:ENST00000627144.2:ENST00000487416.7:ENST00000593404.5:ENST00000597711.5:ENST00000599310.5:ENST00000397349.6:ENST00000602194.5:ENST00000600740.5:ENST00000461488.5:ENST00000463051.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	35	2	2.40608	3.59232	4.77856	0.0425709	0.00305743	0.148082	0.0509893
chr5	179885530	179885628	2780575	0	-	0.5	(0.476,0.515]	chr5	262556	6	INTRON	INTRON	TBC1D9B	ENSG00000197226.13	ENST00000356834.7:ENST00000355235.8:ENST00000524222.2:ENST00000522029.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	35	2	2.40608	3.59232	4.77856	0.0425709	0.00305743	0.148082	0.0509893
chr9	5009682	5009782	4096067	0	+	0.28	[0,0.28]	chr9	373235	233	INTRON	INTRON	JAK2	ENSG00000096968.14	ENST00000636127.1:ENST00000476574.5:ENST00000381652.4	protein_coding	protein_coding	protein_coding	protein_coding	3	67	2	1.88025	3.592245	5.30424	0.029906	0.00584781	0.142135	0.0667594
chr1	112682139	112682239	186955	0	+	0.51	(0.476,0.515]	chr1	20706	50	INTRON	INTRON	MOV10	ENSG00000155363.19	ENST00000413052.6:ENST00000369645.6:ENST00000686097.1:ENST00000690243.1:ENST00000686428.1:ENST00000369644.5:ENST00000496577.5:ENST00000475429.5:ENST00000468624.5:ENST00000465579.1:ENST00000357443.2:ENST00000687509.1:ENST00000689955.1:ENST00000685268.1:ENST00000686923.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	35	2	2.48527	3.592225	4.69918	0.03496	0.00400966	0.13747500000000001	0.057767
chr12	110047471	110047569	5408599	0	-	0.5	(0.476,0.515]	chr12	516355	26	INTRON	INTRON	C12orf76	ENSG00000174456.16	ENST00000546651.3:ENST00000309050.9:ENST00000615315.2:ENST00000687999.1:ENST00000687036.1:ENST00000685920.1:ENST00000549724.3:ENST00000548936.1:ENST00000551185.2:ENST00000546627.1:ENST00000547573.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	35	2	2.48527	3.592225	4.69918	0.03496	0.00400966	0.13747500000000001	0.057767
chr19	34264264	34264363	7051483	0	+	0.494949	(0.476,0.515]	chr19	703250	93	INTRON	INTRON	GARRE1	ENSG00000166398.14	ENST00000588470.5:ENST00000299505.8:ENST00000589583.5:ENST00000588338.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	35	2	2.48527	3.592225	4.69918	0.03496	0.00400966	0.13747500000000001	0.057767
chr22	49608751	49608851	7602168	0	-	0.49	(0.476,0.515]	chr22	778570	131	INTRON	INTRON	MIR3667HG	ENSG00000188511.13	ENST00000414287.5:ENST00000416411.1:ENST00000689875.1	lncRNA	lncRNA	lncRNA	lncRNA	1	35	2	2.48527	3.592225	4.69918	0.03496	0.00400966	0.13747500000000001	0.057767
chr6	87253352	87253451	2914248	0	+	0.484848	(0.476,0.515]	chr6	275337	35	INTRON	INTRON	ZNF292	ENSG00000188994.13	ENST00000369577.8:ENST00000339907.8:ENST00000496806.2:ENST00000466062.2	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	2.48527	3.592225	4.69918	0.03496	0.00400966	0.13747500000000001	0.057767
chr4	461795	461895	2092797	0	-	0.45	(0.44,0.476]	chr4	206783	170	INTRON	INTRON	ABCA11P:ZNF721	ENSG00000251595.7:ENSG00000182903.16	ENST00000451020.6:ENST00000514396.5:ENST00000507854.1:ENST00000515578.5:ENST00000506646.5:ENST00000507078.1:ENST00000511833.3:ENST00000338977.5:ENST00000505900.1	protein_coding	protein_coding	protein_coding:transcribed_processed_pseudogene	protein_coding:nonsense_mediated_decay:processed_transcript	5	135	2	2.4805	3.592185	4.70387	0.00150019	9.71186e-7	0.0351802	5.59755e-4
chr1	66967628	66967727	139877	0	+	0.282828	(0.28,0.32]	chr1	15688	41	INTRON	INTRON	MIER1	ENSG00000198160.15	ENST00000355977.10:ENST00000371018.7:ENST00000357692.6:ENST00000371016.5:ENST00000371014.5:ENST00000401041.6:ENST00000355356.3:ENST00000401042.7	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	2.67453	3.59217	4.50981	0.0275554	0.021289	0.123904	0.123318
chr14	93329306	93329406	5963901	0	-	0.31	(0.28,0.32]	chr14	566292	328	INTRON	INTRON	BTBD7	ENSG00000011114.15	ENST00000334746.10:ENST00000554565.5:ENST00000298896.7:ENST00000554968.1	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	2.67453	3.59217	4.50981	0.0275554	0.021289	0.123904	0.123318
chrX	45045840	45045940	7650338	0	+	0.32	(0.28,0.32]	chrX	782770	78	INTRON	INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000675440.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000621147.5:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1:ENST00000675525.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	38	2	2.67453	3.59217	4.50981	0.0275554	0.021289	0.123904	0.123318
chrX	138983917	138984017	7901402	0	-	0.3	(0.28,0.32]	chrX	804239	1189	INTRON	INTRON	FGF13	ENSG00000129682.16	ENST00000441825.8:ENST00000626909.2:ENST00000436198.5:ENST00000455663.5:ENST00000448673.1:ENST00000421460.1	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	2.67453	3.59217	4.50981	0.0275554	0.021289	0.123904	0.123318
chr6	98911521	98911620	3165219	0	-	0.575758	(0.57,1]	chr6	295199	55	INTRON	INTRON	FBXL4	ENSG00000112234.9	ENST00000369244.7:ENST00000229971.2	protein_coding	protein_coding	protein_coding	protein_coding	2	29	2	2.38391	3.59201	4.80011	0.0104374	6.07135e-4	0.0902296	0.0226059
chr17	62003599	62003699	6810252	0	-	0.23	[0,0.28]	chr17	672911	79	INTRON	INTRON	MED13	ENSG00000108510.10	ENST00000397786.7	protein_coding	protein_coding	protein_coding	protein_coding	5	192	2	2.87415	3.59199	4.30983	2.89911e-4	9.91322e-5	0.015129	0.00901267
chr14	36997794	36997894	5876265	0	-	0.31	(0.28,0.32]	chr14	558013	1224	INTRON	INTRON	SLC25A21	ENSG00000183032.12	ENST00000331299.6:ENST00000555449.5:ENST00000557611.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	38	2	2.38101	3.59178	4.80255	0.0456017	0.0137406	0.164236	0.0949306
chr19	21304919	21305019	7158391	0	-	0.31	(0.28,0.32]	chr19	723652	98	INTRON	INTRON	ZNF708	ENSG00000182141.10	ENST00000356929.3:ENST00000598046.5:ENST00000601295.1:ENST00000602023.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	38	2	2.38101	3.59178	4.80255	0.0456017	0.0137406	0.164236	0.0949306
chr6	147830618	147830718	2992305	0	+	0.32	(0.28,0.32]	chr6	280177	932	INTRON	INTRON	ENSG00000227681	ENSG00000227681.5	ENST00000427015.1	lncRNA	lncRNA	lncRNA	lncRNA	1	38	2	2.38101	3.59178	4.80255	0.0456017	0.0137406	0.164236	0.0949306
chr21	5124331	5124408	7424449	0	-	0.324675	(0.32,0.35]	chr21	757272	2	SS5_PROX	SS5_PROX:INTRON	ENSG00000280071	ENSG00000280071.4	ENST00000624810.3:ENST00000625036.3:ENST00000620528.5:ENST00000620015.4:ENST00000624120.3:ENST00000624648.3:ENST00000624748.2:ENST00000623810.2:ENST00000624714.3:ENST00000623390.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	172	2	2.72587	3.591685	4.4575	1.90571e-4	2.05119e-5	0.0120089	0.00367736
chr1	31269740	31269834	413016	0	-	0.329787	(0.32,0.35]	chr1	49786	1	INTRON	INTRON	SNRNP40	ENSG00000060688.13	ENST00000263694.9:ENST00000489853.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	59	2	2.10695	3.59162	5.07629	0.0127483	0.00468114	0.0987441	0.0600108
chr8	23543810	23543910	3715248	0	+	0.46	(0.44,0.476]	chr8	345227	2	INTRON	INTRON	SLC25A37	ENSG00000147454.14	ENST00000519973.6:ENST00000290075.10:ENST00000417331.6:ENST00000518881.5:ENST00000520654.1:ENST00000523930.1:ENST00000523883.5:ENST00000517923.1:ENST00000520949.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	97	2	3.34209	3.5915049999999997	3.84092	2.66933e-4	1.47653e-4	0.0149989	0.0105526
chr1	244841225	244841323	672851	0	-	0.418367	(0.408,0.44]	chr1	79586	7	UTR3	UTR3:EXON_MRNA	HNRNPU	ENSG00000153187.20	ENST00000475997.6:ENST00000366527.4:ENST00000649899.1	protein_coding	retained_intron	protein_coding	retained_intron:nonsense_mediated_decay	7	200	2	3.28961	3.591485	3.89336	1.1398e-5	3.63302e-6	0.00267843	0.00124237
chr19	11658460	11658560	7018435	0	+	0.39	(0.378,0.408]	chr19	697745	57	INTRON	INTRON	ENSG00000197332	ENSG00000197332.9	ENST00000666937.1:ENST00000344893.4	lncRNA	lncRNA	lncRNA	lncRNA	2	76	2	3.27922	3.591465	3.90371	0.00312717	1.30398e-4	0.0499153	0.00983066
chr1	147268281	147268381	212488	0	+	0.48	(0.476,0.515]	chr1	23538	1	SS3_PROX	SS3_PROX:INTRON	CHD1L	ENSG00000131778.20	ENST00000652587.1:ENST00000652616.1:ENST00000652494.1:ENST00000651207.1:ENST00000650721.1:ENST00000651226.1:ENST00000652161.1:ENST00000651510.1:ENST00000361293.10:ENST00000652278.1:ENST00000369259.4:ENST00000467213.5:ENST00000369258.8:ENST00000622533.4:ENST00000651410.1:ENST00000652486.1:ENST00000652346.1:ENST00000651407.1:ENST00000650828.1:ENST00000651070.1:ENST00000650714.1:ENST00000651420.1:ENST00000652357.1:ENST00000488864.5:ENST00000652188.1:ENST00000651820.1:ENST00000651231.1:ENST00000651206.1:ENST00000431239.6:ENST00000650813.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	33	2	2.65268	3.5914550000000003	4.53023	0.0201975	0.0119748	0.121243	0.0899583
chr11	63875357	63875457	4801235	0	+	0.51	(0.476,0.515]	chr11	445045	56	INTRON	INTRON	MARK2	ENSG00000072518.22	ENST00000377810.8:ENST00000361128.9:ENST00000508192.5:ENST00000350490.11:ENST00000402010.8:ENST00000502399.7:ENST00000425897.3:ENST00000679216.1:ENST00000513765.7:ENST00000543220.5:ENST00000543674.1:ENST00000540169.5	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	2.65268	3.5914550000000003	4.53023	0.0201975	0.0119748	0.121243	0.0899583
chr2	62827754	62827853	793524	0	+	0.484848	(0.476,0.515]	chr2	88768	11	INTRON	INTRON	EHBP1	ENSG00000115504.15	ENST00000405015.7:ENST00000449820.5:ENST00000405482.5:ENST00000431489.6:ENST00000263991.9:ENST00000405289.5	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	2.65268	3.5914550000000003	4.53023	0.0201975	0.0119748	0.121243	0.0899583
chr2	171926540	171926640	918401	0	+	0.49	(0.476,0.515]	chr2	101183	5	INTRON	INTRON	HAT1	ENSG00000128708.13	ENST00000412731.5:ENST00000264108.5:ENST00000457761.6:ENST00000494601.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	33	2	2.65268	3.5914550000000003	4.53023	0.0201975	0.0119748	0.121243	0.0899583
chr7	127668946	127669046	3402559	0	+	0.5	(0.476,0.515]	chr7	318063	161	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000463020.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	33	2	2.65268	3.5914550000000003	4.53023	0.0201975	0.0119748	0.121243	0.0899583
chr1	10162082	10162180	20444	0	+	0.510204	(0.476,0.515]	chr1	1972	4	INTRON	INTRON	UBE4B	ENSG00000130939.20	ENST00000672724.1:ENST00000253251.12:ENST00000343090.11:ENST00000488228.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	33	2	2.56868	3.5913500000000003	4.61402	0.0256676	0.00947755	0.133676	0.0817766
chr17	76222271	76222371	6841515	0	-	0.48	(0.476,0.515]	chr17	676698	94	INTRON	INTRON	RNF157	ENSG00000141576.16	ENST00000647930.1:ENST00000269391.11:ENST00000319945.10:ENST00000592271.1	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	2.56868	3.5913500000000003	4.61402	0.0256676	0.00947755	0.133676	0.0817766
chr17	82847920	82848020	6695175	0	+	0.49	(0.476,0.515]	chr17	654911	14	INTRON	INTRON	TBCD	ENSG00000141556.22	ENST00000682479.1:ENST00000682722.1:ENST00000684464.1:ENST00000684544.1:ENST00000681983.1:ENST00000684361.1:ENST00000683184.1:ENST00000683282.1:ENST00000684408.1:ENST00000355528.9:ENST00000683444.1:ENST00000684776.1:ENST00000683041.1:ENST00000684760.1:ENST00000684349.1:ENST00000682213.1:ENST00000683009.1:ENST00000682921.1:ENST00000539345.6:ENST00000684000.1:ENST00000684188.1:ENST00000684429.1:ENST00000682610.1:ENST00000683821.1:ENST00000682654.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	33	2	2.56868	3.5913500000000003	4.61402	0.0256676	0.00947755	0.133676	0.0817766
chr18	26041252	26041352	6959226	0	-	0.49	(0.476,0.515]	chr18	688437	14	INTRON	INTRON	SS18	ENSG00000141380.14	ENST00000415083.7:ENST00000542420.6:ENST00000579640.5:ENST00000269138.9:ENST00000269137.11:ENST00000585121.5:ENST00000539244.6:ENST00000585241.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	33	2	2.56868	3.5913500000000003	4.61402	0.0256676	0.00947755	0.133676	0.0817766
chr19	38669635	38669735	7065948	0	+	0.51	(0.476,0.515]	chr19	705486	210	INTRON	INTRON	ACTN4	ENSG00000130402.13	ENST00000252699.7:ENST00000588618.5:ENST00000440400.2:ENST00000424234.7:ENST00000589528.1:ENST00000390009.7:ENST00000495553.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	33	2	2.56868	3.5913500000000003	4.61402	0.0256676	0.00947755	0.133676	0.0817766
chr19	49355773	49355858	7200916	0	-	0.505882	(0.476,0.515]	chr19	730347	4	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TEAD2	ENSG00000074219.14	ENST00000311227.6:ENST00000593945.6:ENST00000601519.5:ENST00000598810.5:ENST00000377214.8:ENST00000539846.5:ENST00000598823.5:ENST00000598397.1:ENST00000596757.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	33	2	2.56868	3.5913500000000003	4.61402	0.0256676	0.00947755	0.133676	0.0817766
chr6	125168505	125168605	2953292	0	+	0.48	(0.476,0.515]	chr6	277761	136	INTRON	INTRON	TPD52L1	ENSG00000111907.21	ENST00000534368.5:ENST00000304877.17:ENST00000368402.9:ENST00000368388.6:ENST00000534000.6:ENST00000527711.5:ENST00000392483.6:ENST00000528193.5:ENST00000532429.5:ENST00000532978.5:ENST00000534199.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	33	2	2.56868	3.5913500000000003	4.61402	0.0256676	0.00947755	0.133676	0.0817766
chr8	129508849	129508949	4060370	0	-	0.46	(0.44,0.476]	chr8	369642	137	INTRON	INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1:ENST00000676273.1:ENST00000667643.1:ENST00000668791.1:ENST00000663716.1:ENST00000663572.1:ENST00000676148.1:ENST00000667962.1:ENST00000674877.1:ENST00000675316.1:ENST00000674656.1:ENST00000446592.7:ENST00000667341.1:ENST00000675186.1:ENST00000652971.1:ENST00000661447.1:ENST00000674863.1:ENST00000675498.1:ENST00000675527.1:ENST00000676108.1:ENST00000657647.1:ENST00000675589.1:ENST00000675913.1:ENST00000675109.1:ENST00000671632.1:ENST00000671311.1:ENST00000676099.1:ENST00000660652.1:ENST00000675522.1:ENST00000675183.1:ENST00000658861.1:ENST00000663991.1:ENST00000675044.1:ENST00000675435.1:ENST00000674639.1:ENST00000676069.1:ENST00000675532.1:ENST00000674762.1:ENST00000523151.6:ENST00000675948.1:ENST00000665364.1:ENST00000657251.1:ENST00000675166.1:ENST00000674883.1:ENST00000675867.1:ENST00000674580.1:ENST00000675393.1:ENST00000520048.1:ENST00000674906.1:ENST00000676030.1:ENST00000670588.1:ENST00000675072.1:ENST00000664936.1:ENST00000652914.1:ENST00000657069.1	lncRNA	lncRNA	lncRNA	lncRNA	8	220	2	2.73285	3.59135	4.44985	7.27953e-5	3.1192e-7	0.00711523	3.04894e-4
chr12	120468335	120468433	5434010	0	-	0.459184	(0.44,0.476]	chr12	519512	22	INTRON	INTRON	SRSF9	ENSG00000111786.9	ENST00000229390.8:ENST00000603963.1:ENST00000550458.1:ENST00000546942.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	45	2	1.93084	3.591315	5.25179	0.0443175	0.00124521	0.162302	0.0322969
chr17	77404385	77404484	6680688	0	+	0.464646	(0.44,0.476]	chr17	652533	13	INTRON	INTRON	SEPTIN9	ENSG00000184640.20	ENST00000591198.5:ENST00000427177.6:ENST00000431235.6:ENST00000449803.6:ENST00000329047.13:ENST00000588575.1:ENST00000590294.6:ENST00000588690.6:ENST00000423034.6:ENST00000590059.5:ENST00000427674.6:ENST00000592420.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	45	2	1.93084	3.591315	5.25179	0.0443175	0.00124521	0.162302	0.0322969
chr16	89986261	89986357	6423428	0	+	0.520833	(0.515,0.57]	chr16	617020	3	INTRON	INTRON	AFG3L1P	ENSG00000223959.9	ENST00000429663.6:ENST00000418696.5:ENST00000690928.1:ENST00000436447.5:ENST00000457926.5:ENST00000688932.1:ENST00000685584.1:ENST00000437774.5:ENST00000557444.5:ENST00000388970.7:ENST00000458301.5	transcribed_unitary_pseudogene	processed_transcript	transcribed_unitary_pseudogene	processed_transcript:transcribed_unitary_pseudogene	2	45	2	2.58624	3.59127	4.5963	0.00526399	0.00370287	0.0633874	0.0561162
chr5	154772778	154772878	2527172	0	+	0.48	(0.476,0.515]	chr5	241610	149	INTRON	INTRON	LARP1	ENSG00000155506.19	ENST00000687700.1:ENST00000336314.9:ENST00000690816.1:ENST00000518297.6:ENST00000517616.5:ENST00000518892.1:ENST00000521577.1:ENST00000519931.5:ENST00000524248.5:ENST00000685946.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	215	2	3.09014	3.591185	4.09223	6.98394e-6	2.96351e-6	0.00187943	0.00120829
chr10	86807684	86807784	4479908	0	+	0.32	(0.28,0.32]	chr10	412292	504	INTRON	INTRON	BMPR1A	ENSG00000107779.14	ENST00000638429.1:ENST00000372037.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	51	2	2.13651	3.59115	5.04579	0.0265696	0.00714672	0.134088	0.0723634
chr7	77851545	77851645	3344480	0	+	0.29	(0.28,0.32]	chr7	311490	109	INTRON	INTRON	PHTF2	ENSG00000006576.17	ENST00000422959.7:ENST00000416283.6:ENST00000307305.12:ENST00000424760.5:ENST00000415251.6:ENST00000275575.11:ENST00000450574.5:ENST00000248550.7	protein_coding	protein_coding	protein_coding	protein_coding	2	51	2	2.08149	3.5910900000000003	5.10069	0.031124	0.00610574	0.143644	0.0676501
chr22	21502762	21502862	7560118	0	-	0.4	(0.378,0.408]	chr22	773318	103	INTRON	INTRON	PI4KAP2	ENSG00000183506.17	ENST00000450651.5:ENST00000467443.5:ENST00000479693.1:ENST00000476537.1:ENST00000491562.5	transcribed_unitary_pseudogene	retained_intron	transcribed_unitary_pseudogene	retained_intron:processed_transcript	4	62	2	1.71374	3.5910349999999998	5.46833	0.0274158	7.05018e-4	0.136498	0.024224
chr8	1790249	1790348	3691251	0	+	0.555556	(0.515,0.57]	chr8	342603	38	INTRON	INTRON	CLN8	ENSG00000182372.10	ENST00000636934.1	protein_coding	protein_coding	protein_coding	protein_coding	2	65	2	3.37125	3.591025	3.8108	0.00136343	2.17298e-4	0.0339121	0.0135077
chr1	21123216	21123316	393093	0	-	0.43	(0.408,0.44]	chr1	46836	102	INTRON	INTRON	EIF4G3	ENSG00000075151.24	ENST00000374935.7:ENST00000602326.6:ENST00000685872.1:ENST00000686579.1:ENST00000688741.1:ENST00000400422.6:ENST00000634879.2:ENST00000693470.1:ENST00000685814.1:ENST00000356916.7:ENST00000682284.1:ENST00000438975.5:ENST00000411888.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	33	2	2.66579	3.590915	4.51604	0.019342	0.0137419	0.119831	0.0949306
chr1	21447740	21447837	41497	0	+	0.412371	(0.408,0.44]	chr1	4917	14	INTRON	INTRON	NBPF3	ENSG00000142794.19	ENST00000454000.6:ENST00000318220.10:ENST00000318249.10:ENST00000478653.6:ENST00000342104.9:ENST00000486229.5:ENST00000434838.6:ENST00000467103.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	33	2	2.66579	3.590915	4.51604	0.019342	0.0137419	0.119831	0.0949306
chr1	212770972	212771072	634572	0	-	0.42	(0.408,0.44]	chr1	74955	43	INTRON	INTRON	NSL1	ENSG00000117697.15	ENST00000366977.8:ENST00000366978.5:ENST00000366976.3:ENST00000626725.1	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	2.66579	3.590915	4.51604	0.019342	0.0137419	0.119831	0.0949306
chr1	246292719	246292819	678562	0	-	0.44	(0.408,0.44]	chr1	79733	991	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000453676.5:ENST00000462422.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	33	2	2.66579	3.590915	4.51604	0.019342	0.0137419	0.119831	0.0949306
chr16	11005004	11005103	6288161	0	+	0.414141	(0.408,0.44]	chr16	602178	13	INTRON	INTRON	CLEC16A	ENSG00000038532.16	ENST00000409790.6:ENST00000409552.4:ENST00000494853.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	33	2	2.66579	3.590915	4.51604	0.019342	0.0137419	0.119831	0.0949306
chr18	13001263	13001356	6876670	0	+	0.430108	(0.408,0.44]	chr18	681352	4	SS3_PROX	SS3_PROX:INTRON	CEP192	ENSG00000101639.19	ENST00000325971.12:ENST00000506447.5:ENST00000589596.5:ENST00000507064.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	33	2	2.66579	3.590915	4.51604	0.019342	0.0137419	0.119831	0.0949306
chr6	163521484	163521584	3032780	0	+	0.41	(0.408,0.44]	chr6	282586	422	INTRON	INTRON	QKI	ENSG00000112531.17	ENST00000361758.8:ENST00000453779.6:ENST00000275262.11:ENST00000392127.6:ENST00000361752.8:ENST00000361195.6:ENST00000424802.7:ENST00000545607.5:ENST00000544436.5:ENST00000537041.5:ENST00000545346.1:ENST00000544823.5:ENST00000537883.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	33	2	2.66579	3.590915	4.51604	0.019342	0.0137419	0.119831	0.0949306
chr7	149013631	149013727	3670897	0	-	0.416667	(0.408,0.44]	chr7	340676	9	INTRON	INTRON	PDIA4	ENSG00000155660.11	ENST00000652332.1:ENST00000286091.9	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	2.66579	3.590915	4.51604	0.019342	0.0137419	0.119831	0.0949306
chr11	34075046	34075144	4767889	0	+	0.418367	(0.408,0.44]	chr11	440970	27	INTRON	INTRON	CAPRIN1	ENSG00000135387.21	ENST00000341394.9:ENST00000528856.5:ENST00000389645.7:ENST00000534042.5:ENST00000534825.5:ENST00000532820.5:ENST00000530820.5:ENST00000529307.1:ENST00000526494.5:ENST00000533641.5:ENST00000530008.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	33	2	2.58179	3.5907899999999997	4.59979	0.024638	0.0109537	0.131869	0.0873034
chr2	60774052	60774148	785311	0	+	0.4375	(0.408,0.44]	chr2	88297	21	INTRON	INTRON	PAPOLG	ENSG00000115421.13	ENST00000496283.5:ENST00000414060.5:ENST00000238714.8:ENST00000453839.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	33	2	2.58179	3.5907899999999997	4.59979	0.024638	0.0109537	0.131869	0.0873034
chr3	60266327	60266427	1712277	0	-	0.44	(0.408,0.44]	chr3	176138	1856	INTRON	INTRON	FHIT	ENSG00000189283.10	ENST00000492590.6:ENST00000476844.5:ENST00000468189.5:ENST00000488467.5	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	2.58179	3.5907899999999997	4.59979	0.024638	0.0109537	0.131869	0.0873034
chr6	43519805	43519905	2871031	0	+	0.44	(0.408,0.44]	chr6	272203	2	CDS	CDS:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	POLR1C	ENSG00000171453.20	ENST00000428025.6:ENST00000646188.1:ENST00000481352.6:ENST00000372344.6:ENST00000607635.2:ENST00000646433.1:ENST00000646700.1:ENST00000304004.7:ENST00000643799.1:ENST00000642195.1:ENST00000645141.1:ENST00000488601.6:ENST00000643341.1:ENST00000423780.1:ENST00000455605.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	33	2	2.58179	3.5907899999999997	4.59979	0.024638	0.0109537	0.131869	0.0873034
chr8	55959068	55959167	3755139	0	+	0.424242	(0.408,0.44]	chr8	349299	34	INTRON	INTRON	LYN	ENSG00000254087.8	ENST00000519728.6:ENST00000520220.6:ENST00000420292.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	33	2	2.58179	3.5907899999999997	4.59979	0.024638	0.0109537	0.131869	0.0873034
chr15	66641485	66641584	6051376	0	+	0.272727	[0,0.28]	chr15	576221	589	INTRON	INTRON	LINC01169	ENSG00000259471.1	ENST00000558797.1	lncRNA	lncRNA	lncRNA	lncRNA	1	46	2	2.54624	3.590735	4.63523	0.0388449	0.0139836	0.143072	0.10247
chr1	40741543	40741643	82867	0	+	0.35	(0.32,0.35]	chr1	10751	22	INTRON	INTRON	NFYC	ENSG00000066136.21	ENST00000467203.5:ENST00000424419.6:ENST00000427410.6:ENST00000447388.8:ENST00000425457.6:ENST00000453631.5:ENST00000456393.6:ENST00000372654.5:ENST00000534399.5:ENST00000372653.5:ENST00000372669.8:ENST00000372652.5:ENST00000372651.5:ENST00000531464.5:ENST00000440226.7:ENST00000525290.5:ENST00000416859.6:ENST00000530965.5:ENST00000308733.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	36	2	2.64129	3.590585	4.53988	0.0222819	0.0202178	0.124303	0.109913
chr10	96133748	96133848	4502232	0	+	0.34	(0.32,0.35]	chr10	414474	1	SS5_PROX	SS5_PROX:INTRON	ZNF518A	ENSG00000177853.15	ENST00000614149.2:ENST00000488700.5:ENST00000624776.4:ENST00000539666.5:ENST00000563195.1:ENST00000316045.10	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	36	2	2.64129	3.590585	4.53988	0.0222819	0.0202178	0.124303	0.109913
chr14	73912111	73912211	5786915	0	+	0.35	(0.32,0.35]	chr14	548223	23	INTRON	INTRON	ZNF410	ENSG00000119725.21	ENST00000540593.5:ENST00000555730.6:ENST00000324593.10:ENST00000556396.5:ENST00000555044.6:ENST00000541357.6:ENST00000398139.7:ENST00000442160.7:ENST00000334521.8:ENST00000615736.4:ENST00000554316.1:ENST00000557679.5:ENST00000555620.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	36	2	2.64129	3.590585	4.53988	0.0222819	0.0202178	0.124303	0.109913
chr16	224143	224243	6426137	0	-	0.33	(0.32,0.35]	chr16	617444	30	INTRON	INTRON	LUC7L	ENSG00000007392.17	ENST00000337351.8:ENST00000426094.5:ENST00000397783.5:ENST00000629543.2:ENST00000490762.5:ENST00000293872.13:ENST00000419516.5:ENST00000397780.5:ENST00000418978.5:ENST00000430864.5:ENST00000443357.5:ENST00000494366.5:ENST00000469109.1:ENST00000428363.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	36	2	2.64129	3.590585	4.53988	0.0222819	0.0202178	0.124303	0.109913
chr3	196428128	196428228	1899623	0	-	0.35	(0.32,0.35]	chr3	190226	120	INTRON	INTRON	UBXN7	ENSG00000163960.12	ENST00000296328.9:ENST00000429160.1:ENST00000428095.1:ENST00000381887.7:ENST00000493566.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	36	2	2.64129	3.590585	4.53988	0.0222819	0.0202178	0.124303	0.109913
chr3	64016946	64017044	1724018	0	-	0.326531	(0.32,0.35]	chr3	176303	35	EXON_MRNA	EXON_MRNA:INTRON	PSMD6	ENSG00000163636.11	ENST00000394431.6:ENST00000295901.9:ENST00000480205.5:ENST00000467853.5:ENST00000492933.5:ENST00000476464.5:ENST00000482510.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	37	2	2.90786	3.5904299999999996	4.273	0.0368357	0.00993008	0.138959	0.0877296
chr5	95931631	95931731	2682214	0	-	0.35	(0.32,0.35]	chr5	253552	117	INTRON	INTRON	ELL2	ENSG00000118985.16	ENST00000237853.9:ENST00000513343.1:ENST00000506628.1:ENST00000508694.1:ENST00000635633.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	37	2	2.90786	3.5904299999999996	4.273	0.0368357	0.00993008	0.138959	0.0877296
chr1	52032201	52032300	456263	0	-	0.383838	(0.378,0.408]	chr1	54705	2	UTR3	UTR3:EXON_MRNA:INTRON	TXNDC12:KTI12	ENSG00000117862.13:ENSG00000198841.4	ENST00000371626.9:ENST00000472624.5:ENST00000371614.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	45	2	2.23831	3.5904049999999996	4.9425	0.0179575	0.00452675	0.114265	0.0595107
chr18	12350884	12350984	6946869	0	-	0.38	(0.378,0.408]	chr18	687211	4	SS5_PROX	SS5_PROX:INTRON	AFG3L2	ENSG00000141385.12	ENST00000269143.8:ENST00000691970.1:ENST00000691179.1:ENST00000687337.1:ENST00000692988.1:ENST00000692497.1:ENST00000688199.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	45	2	2.23831	3.5904049999999996	4.9425	0.0179575	0.00452675	0.114265	0.0595107
chr10	50326404	50326504	4617701	0	-	0.35	(0.32,0.35]	chr10	425393	146	INTRON	INTRON	SGMS1	ENSG00000198964.14	ENST00000429490.5:ENST00000361781.7:ENST00000602619.1	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	2.48693	3.5903650000000003	4.6938	0.0338094	0.0137794	0.146709	0.0949306
chr11	58601646	58601746	4793969	0	+	0.33	(0.32,0.35]	chr11	443838	164	INTRON	INTRON	ZFP91	ENSG00000186660.15	ENST00000316059.7	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	2.48693	3.5903650000000003	4.6938	0.0338094	0.0137794	0.146709	0.0949306
chr12	55925681	55925781	5333216	0	-	0.35	(0.32,0.35]	chr12	509228	110	INTRON	INTRON	PYM1	ENSG00000170473.17	ENST00000408946.7:ENST00000398213.4:ENST00000302533.6:ENST00000557259.5:ENST00000547925.1:ENST00000549939.1:ENST00000454792.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	36	2	2.48693	3.5903650000000003	4.6938	0.0338094	0.0137794	0.146709	0.0949306
chr12	111869970	111870070	5229012	0	+	0.35	(0.32,0.35]	chr12	495659	3	SS3_PROX	SS3_PROX:INTRON	MAPKAPK5	ENSG00000089022.14	ENST00000550735.7:ENST00000553053.5:ENST00000546394.1:ENST00000551404.6:ENST00000549875.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	36	2	2.48693	3.5903650000000003	4.6938	0.0338094	0.0137794	0.146709	0.0949306
chr22	43003238	43003338	7598235	0	-	0.33	(0.32,0.35]	chr22	778204	9	INTRON	INTRON	PACSIN2	ENSG00000100266.19	ENST00000263246.8:ENST00000453643.5:ENST00000445706.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	36	2	2.48693	3.5903650000000003	4.6938	0.0338094	0.0137794	0.146709	0.0949306
chr4	110076529	110076629	2226511	0	-	0.35	(0.32,0.35]	chr4	218012	164	INTRON	INTRON	ELOVL6	ENSG00000170522.10	ENST00000394607.7:ENST00000302274.8:ENST00000514184.5:ENST00000506625.5:ENST00000506461.1:ENST00000503885.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	36	2	2.48693	3.5903650000000003	4.6938	0.0338094	0.0137794	0.146709	0.0949306
chr7	119898798	119898898	3630329	0	-	0.35	(0.32,0.35]	chr7	337335	976	INTRON	INTRON	LINC02476	ENSG00000225546.6	ENST00000660268.1:ENST00000431071.5:ENST00000426413.2	lncRNA	lncRNA	lncRNA	lncRNA	1	36	2	2.48693	3.5903650000000003	4.6938	0.0338094	0.0137794	0.146709	0.0949306
chr7	127952614	127952714	3405427	0	+	0.33	(0.32,0.35]	chr7	318177	30	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000486037.1:ENST00000484767.5:ENST00000492840.1:ENST00000470723.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	36	2	2.48693	3.5903650000000003	4.6938	0.0338094	0.0137794	0.146709	0.0949306
chr9	112325650	112325750	4317881	0	-	0.33	(0.32,0.35]	chr9	397079	274	INTRON	INTRON	PTBP3	ENSG00000119314.16	ENST00000334318.10:ENST00000458258.5:ENST00000374257.6:ENST00000374255.6:ENST00000343327.6:ENST00000487997.1:ENST00000210227.4:ENST00000450374.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	36	2	2.48693	3.5903650000000003	4.6938	0.0338094	0.0137794	0.146709	0.0949306
chr1	245871378	245871478	674337	0	-	0.38	(0.378,0.408]	chr1	79681	71	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000366517.5:ENST00000366516.5:ENST00000490107.6:ENST00000470510.5:ENST00000493441.5:ENST00000488153.5:ENST00000492487.5:ENST00000391836.3:ENST00000464398.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	45	2	2.17608	3.590335	5.00459	0.0218783	0.00371142	0.123836	0.0535094
chr17	6904700	6904800	6717250	0	-	0.4	(0.378,0.408]	chr17	658643	230	INTRON	INTRON	ALOX12-AS1	ENSG00000215067.11	ENST00000653385.1:ENST00000659418.1:ENST00000572385.5:ENST00000570562.5:ENST00000575889.5	lncRNA	lncRNA	lncRNA	lncRNA	2	45	2	2.17608	3.590335	5.00459	0.0218783	0.00371142	0.123836	0.0535094
chr17	78780502	78780602	6845818	0	-	0.38	(0.378,0.408]	chr17	677345	437	INTRON	INTRON	CYTH1	ENSG00000108669.17	ENST00000589296.5:ENST00000361101.8:ENST00000446868.8:ENST00000591455.5:ENST00000591574.5:ENST00000592497.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	45	2	2.17608	3.590335	5.00459	0.0218783	0.00371142	0.123836	0.0535094
chr2	159265921	159266021	1249290	0	-	0.38	(0.378,0.408]	chr2	132474	57	INTRON	INTRON	WDSUB1	ENSG00000196151.11	ENST00000359774.9:ENST00000358147.8:ENST00000409990.7:ENST00000392796.7:ENST00000409124.1	protein_coding	protein_coding	protein_coding	protein_coding	2	45	2	2.17608	3.590335	5.00459	0.0218783	0.00371142	0.123836	0.0535094
chr14	50941491	50941589	5893220	0	-	0.367347	(0.35,0.378]	chr14	559634	33	INTRON	INTRON	PYGL	ENSG00000100504.17	ENST00000532462.5:ENST00000216392.8:ENST00000544180.6:ENST00000530336.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	41	2	2.99044	3.59033	4.19022	0.0209891	0.00894806	0.122348	0.0799922
chr2	197915483	197915582	970211	0	+	0.373737	(0.35,0.378]	chr2	104858	1048	INTRON	INTRON	PLCL1	ENSG00000115896.16	ENST00000428675.6:ENST00000435320.1:ENST00000487695.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	63	2	2.03027	3.5902149999999997	5.15016	0.0185322	9.78549e-4	0.108861	0.0287765
chr17	67341452	67341552	6825878	0	-	0.3	(0.28,0.32]	chr17	674566	4	SS3_PROX	SS3_PROX:INTRON	PSMD12	ENSG00000197170.10	ENST00000356126.8:ENST00000357146.4:ENST00000584008.5:ENST00000577724.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	71	2	1.47299	3.59019	5.70739	0.0597769	8.32651e-4	0.189982	0.0266389
chr7	23417399	23417497	3503134	0	-	0.27551	[0,0.28]	chr7	326900	8	INTRON	INTRON	IGF2BP3	ENSG00000136231.14	ENST00000258729.8:ENST00000421467.6:ENST00000468263.5:ENST00000479504.5:ENST00000466809.6:ENST00000491719.5:ENST00000465058.5:ENST00000469723.5:ENST00000476938.5:ENST00000468005.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	58	2	2.48813	3.59002	4.69191	0.0269474	0.00953591	0.123442	0.0863913
chr6	11099977	11100077	2812774	0	+	0.22	[0,0.28]	chr6	264729	52	INTRON	INTRON	SMIM13	ENSG00000224531.6	ENST00000416247.4:ENST00000376935.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	45	2	2.33055	3.58993	4.84931	0.062338	0.00779241	0.175343	0.0787356
chr6	110890622	110890705	2939106	0	+	0.409639	(0.408,0.44]	chr6	276779	3	SS5_PROX	SS5_PROX:INTRON	AMD1	ENSG00000123505.19	ENST00000451850.6:ENST00000675380.1:ENST00000368882.8:ENST00000672937.2:ENST00000368885.8:ENST00000368877.9:ENST00000368876.2:ENST00000612642.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	54	2	1.69566	3.58991	5.48416	0.0453922	5.43528e-4	0.164236	0.0215026
chr1	110896452	110896552	183680	0	+	0.39	(0.378,0.408]	chr1	20384	4	SS3_PROX	SS3_PROX:INTRON	CD53	ENSG00000143119.14	ENST00000648608.1:ENST00000271324.6:ENST00000476408.1:ENST00000497404.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	60	2	1.94906	3.589585	5.23011	0.023282	5.72873e-4	0.118176	0.0217398
chr19	1598626	1598726	7112588	0	-	0.53	(0.515,0.57]	chr19	714553	3	SS3_PROX	SS3_PROX:INTRON	ENSG00000267059:UQCR11	ENSG00000267059.2:ENSG00000127540.12	ENST00000585937.1:ENST00000591899.8:ENST00000593029.1:ENST00000589880.1:ENST00000593264.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	43	2	2.32967	3.589515	4.84936	0.0133671	0.00146032	0.0946278	0.0349875
chr9	137661812	137661912	4223904	0	+	0.55	(0.515,0.57]	chr9	388170	104	INTRON	INTRON	EHMT1	ENSG00000181090.21	ENST00000462484.5:ENST00000371394.6:ENST00000630754.2:ENST00000460843.6:ENST00000626216.2:ENST00000629335.2:ENST00000637335.1:ENST00000636376.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	43	2	2.32967	3.589515	4.84936	0.0133671	0.00146032	0.0946278	0.0349875
chr6	52365679	52365778	2875502	0	+	0.323232	(0.32,0.35]	chr6	272897	28	INTRON	INTRON	PAQR8:EFHC1	ENSG00000170915.9:ENSG00000096093.16	ENST00000512121.1:ENST00000635984.1:ENST00000637849.1:ENST00000635760.1:ENST00000442253.3:ENST00000491749.2:ENST00000360726.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	37	2	2.21917	3.58944	4.95971	0.0641245	0.00663522	0.199279	0.0703181
chr7	75737900	75738000	3561241	0	-	0.34	(0.32,0.35]	chr7	331788	37	INTRON	INTRON	HIP1	ENSG00000127946.17	ENST00000336926.11:ENST00000434438.6:ENST00000485723.1:ENST00000479835.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	37	2	2.21917	3.58944	4.95971	0.0641245	0.00663522	0.199279	0.0703181
chr7	158858440	158858539	3456147	0	+	0.333333	(0.32,0.35]	chr7	323132	13	INTRON	INTRON	DYNC2I1	ENSG00000126870.16	ENST00000407559.8	protein_coding	protein_coding	protein_coding	protein_coding	1	37	2	2.21917	3.58944	4.95971	0.0641245	0.00663522	0.199279	0.0703181
chr11	102347574	102347664	4855156	0	+	0.488889	(0.476,0.515]	chr11	452771	5	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	BIRC2	ENSG00000110330.10	ENST00000527808.1:ENST00000227758.7:ENST00000530675.5:ENST00000532832.5:ENST00000534646.5:ENST00000533742.5:ENST00000532672.5:ENST00000531259.5:ENST00000527465.1:ENST00000527910.5:ENST00000613397.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	45	2	2.48551	3.5893550000000003	4.6932	0.00756632	0.00753088	0.0773151	0.074841
chr1	111161154	111161225	183940	0	+	0.408451	(0.408,0.44]	chr1	20429	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CEPT1	ENSG00000134255.15	ENST00000545121.5:ENST00000498239.5:ENST00000476865.5:ENST00000357172.9:ENST00000460443.5:ENST00000478042.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	157	2	3.56186	3.589345	3.61683	5.47818e-5	6.20041e-6	0.00651589	0.00174887
chr2	15284080	15284179	1070349	0	-	0.343434	(0.32,0.35]	chr2	114239	66	INTRON	INTRON	NBAS	ENSG00000151779.13	ENST00000281513.10:ENST00000442506.5	protein_coding	protein_coding	protein_coding	protein_coding	1	40	2	3.23331	3.5892999999999997	3.94529	0.0693433	0.00315414	0.184298	0.0515261
chr10	22646871	22646970	4579822	0	-	0.262626	[0,0.28]	chr10	422028	2	INTRON	INTRON	PIP4K2A	ENSG00000150867.14	ENST00000376573.9:ENST00000545335.5:ENST00000605011.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	41	2	2.63238	3.58924	4.5461	0.0365918	0.0259691	0.138959	0.133676
chr12	46366463	46366563	5316634	0	-	0.28	[0,0.28]	chr12	505797	2	SS5_PROX	SS5_PROX:INTRON	SLC38A2	ENSG00000134294.14	ENST00000256689.10:ENST00000549258.5:ENST00000612232.1:ENST00000548870.5:ENST00000547252.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	41	2	2.63238	3.58924	4.5461	0.0365918	0.0259691	0.138959	0.133676
chr12	122483563	122483662	5441813	0	-	0.222222	[0,0.28]	chr12	520492	1	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	ZCCHC8	ENSG00000033030.15	ENST00000672018.1:ENST00000633063.3:ENST00000543897.5:ENST00000536306.5:ENST00000544054.5:ENST00000536663.5:ENST00000540586.1:ENST00000538493.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	41	2	2.63238	3.58924	4.5461	0.0365918	0.0259691	0.138959	0.133676
chr15	94900212	94900312	6105631	0	+	0.25	[0,0.28]	chr15	581666	430	INTRON	INTRON	ENSG00000277654	ENSG00000277654.6	ENST00000618611.4:ENST00000648065.1:ENST00000618377.1:ENST00000621842.4:ENST00000615751.4:ENST00000614581.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	1	41	2	2.63238	3.58924	4.5461	0.0365918	0.0259691	0.138959	0.133676
chr2	144503661	144503758	1241644	0	-	0.268041	[0,0.28]	chr2	131742	1	EXON_LNCRNA	EXON_LNCRNA:INTRON	ZEB2	ENSG00000169554.23	ENST00000636471.1:ENST00000627532.3:ENST00000638128.1:ENST00000637304.1:ENST00000636179.1:ENST00000419938.5:ENST00000409487.7:ENST00000636732.2:ENST00000636026.2:ENST00000675069.1:ENST00000689298.1:ENST00000539609.7:ENST00000558170.6:ENST00000303660.8:ENST00000427902.5:ENST00000637267.2:ENST00000392861.6:ENST00000431672.4:ENST00000409211.5:ENST00000465308.5:ENST00000434448.5:ENST00000472146.5:ENST00000461784.3:ENST00000476394.5:ENST00000637591.2:ENST00000479735.1:ENST00000453352.5:ENST00000435831.5:ENST00000444559.5:ENST00000630572.2:ENST00000484313.3:ENST00000629955.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	41	2	2.63238	3.58924	4.5461	0.0365918	0.0259691	0.138959	0.133676
chr20	32420281	32420381	7256446	0	+	0.27	[0,0.28]	chr20	737076	479	INTRON	INTRON	ASXL1	ENSG00000171456.21	ENST00000651418.1:ENST00000375687.10:ENST00000613218.4:ENST00000644587.1:ENST00000620121.4:ENST00000646985.1:ENST00000643168.1:ENST00000306058.9:ENST00000645688.1:ENST00000470145.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	41	2	2.63238	3.58924	4.5461	0.0365918	0.0259691	0.138959	0.133676
chr22	16628673	16628773	7473633	0	+	0.27	[0,0.28]	chr22	762000	54	INTRON	INTRON	TPTEP1	ENSG00000100181.22	ENST00000558085.6:ENST00000400593.6:ENST00000426585.5:ENST00000383140.7	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	1	41	2	2.63238	3.58924	4.5461	0.0365918	0.0259691	0.138959	0.133676
chr4	67483371	67483471	2152876	0	-	0.27	[0,0.28]	chr4	211913	80	INTRON	INTRON	CENPC	ENSG00000145241.11	ENST00000273853.11:ENST00000513216.5:ENST00000506882.5:ENST00000515140.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	41	2	2.63238	3.58924	4.5461	0.0365918	0.0259691	0.138959	0.133676
chr12	76064178	76064278	5370013	0	-	0.29	(0.28,0.32]	chr12	512308	27	INTRON	INTRON	NAP1L1	ENSG00000187109.15	ENST00000618691.5:ENST00000552056.5:ENST00000393263.7:ENST00000431879.7:ENST00000552147.5:ENST00000547773.5:ENST00000544816.5:ENST00000542344.5:ENST00000535020.6:ENST00000549596.5:ENST00000552342.5:ENST00000547529.6:ENST00000548044.5:ENST00000550934.5:ENST00000551992.5:ENST00000548273.5:ENST00000551600.5:ENST00000547704.5:ENST00000551524.5:ENST00000549988.5:ENST00000547479.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	91	2	3.36855	3.589185	3.80982	0.00305882	3.09593e-4	0.0494118	0.0157609
chr3	40534089	40534188	1402562	0	+	0.232323	[0,0.28]	chr3	147394	11	UTR3	UTR3:EXON_MRNA:INTRON	ZNF621	ENSG00000172888.12	ENST00000310898.5:ENST00000339296.10:ENST00000490457.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	104	2	3.57809	3.58914	3.60019	0.00172089	0.00109779	0.0374701	0.0303708
chr8	23432132	23432231	3925728	0	-	0.292929	(0.28,0.32]	chr8	359305	31	UTR3	UTR3:EXON_MRNA:INTRON	ENTPD4	ENSG00000197217.13	ENST00000356206.10:ENST00000518471.5:ENST00000521321.5:ENST00000358689.9	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	51	2	2.1895	3.58911	4.98872	0.0227063	0.00838468	0.124921	0.0774402
chr10	5812156	5812256	4544908	0	-	0.3	(0.28,0.32]	chr10	419807	2	SS3_PROX	SS3_PROX:INTRON	GDI2	ENSG00000057608.17	ENST00000380191.9:ENST00000380181.7:ENST00000456041.5:ENST00000418688.5:ENST00000608581.5:ENST00000380127.5:ENST00000609712.1	protein_coding	protein_coding	protein_coding	protein_coding	1	42	2	2.57195	3.589025	4.6061	0.0331711	0.0102724	0.133994	0.089002
chr17	70022197	70022297	6827666	0	-	0.32	(0.28,0.32]	chr17	674993	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	ENSG00000230258	ENSG00000230258.6	ENST00000435112.5:ENST00000587325.1	lncRNA	lncRNA	lncRNA	lncRNA	1	42	2	2.57195	3.589025	4.6061	0.0331711	0.0102724	0.133994	0.089002
chr2	157273604	157273704	896677	0	+	0.3	(0.28,0.32]	chr2	99276	137	INTRON	INTRON	GALNT5	ENSG00000136542.9	ENST00000259056.5	protein_coding	protein_coding	protein_coding	protein_coding	1	42	2	2.57195	3.589025	4.6061	0.0331711	0.0102724	0.133994	0.089002
chr3	121518973	121519072	1798180	0	-	0.30303	(0.28,0.32]	chr3	180534	66	INTRON	INTRON	POLQ	ENSG00000051341.15	ENST00000264233.6	protein_coding	protein_coding	protein_coding	protein_coding	1	42	2	2.57195	3.589025	4.6061	0.0331711	0.0102724	0.133994	0.089002
chr7	123733619	123733719	3632507	0	-	0.39	(0.378,0.408]	chr7	337581	240	INTRON	INTRON	WASL	ENSG00000106299.8	ENST00000223023.5	protein_coding	protein_coding	protein_coding	protein_coding	2	46	2	2.51464	3.58901	4.66338	0.0103469	0.00684341	0.0850389	0.0748032
chr16	58597444	58597544	6496056	0	-	0.38	(0.378,0.408]	chr16	628630	82	INTRON	INTRON	CNOT1	ENSG00000125107.19	ENST00000317147.10:ENST00000569240.5:ENST00000567188.5:ENST00000441024.6:ENST00000565605.5:ENST00000564557.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	144	2	3.32404	3.588975	3.85391	2.84248e-4	8.51468e-6	0.015495	0.00210871
chr15	50353577	50353675	6171860	0	-	0.295918	(0.28,0.32]	chr15	588168	48	EXON_LNCRNA	EXON_LNCRNA:INTRON	GABPB1:GABPB1-IT1	ENSG00000104064.18:ENSG00000285410.1	ENST00000380877.8:ENST00000220429.12:ENST00000543881.5:ENST00000396464.7:ENST00000429662.6:ENST00000359031.8:ENST00000560825.5:ENST00000558970.2:ENST00000615671.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	2	51	2	2.0243	3.58894	5.15358	0.0364967	0.0052282	0.153759	0.0633615
chr20	43668490	43668589	7276069	0	+	0.50505	(0.476,0.515]	chr20	739717	8	INTRON	INTRON	MYBL2	ENSG00000101057.16	ENST00000396863.8:ENST00000217026.5	protein_coding	protein_coding	protein_coding	protein_coding	2	45	2	1.91817	3.58881	5.25945	0.0459211	0.00111445	0.164984	0.0306328
chr1	32678836	32678935	66121	0	+	0.474747	(0.44,0.476]	chr1	8465	49	INTRON	INTRON	RBBP4	ENSG00000162521.19	ENST00000414241.7:ENST00000373493.10:ENST00000492348.6:ENST00000373485.5:ENST00000458695.6:ENST00000463378.5:ENST00000460669.5:ENST00000482190.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	33	2	2.74372	3.5887450000000003	4.43377	0.0162803	0.0153007	0.108569	0.101453
chr15	32522692	32522778	6127865	0	-	0.453488	(0.44,0.476]	chr15	583703	1	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	WHAMMP1	ENSG00000223509.8	ENST00000604301.1:ENST00000561563.6	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	1	33	2	2.74372	3.5887450000000003	4.43377	0.0162803	0.0153007	0.108569	0.101453
chr3	37064369	37064466	1655489	0	-	0.463918	(0.44,0.476]	chr3	169889	7	EXON_MRNA	EXON_MRNA:INTRON	LRRFIP2	ENSG00000093167.18	ENST00000336686.9:ENST00000354379.8:ENST00000421276.6:ENST00000460646.5:ENST00000496479.5:ENST00000396428.6:ENST00000440230.5:ENST00000440742.2:ENST00000487246.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	33	2	2.74372	3.5887450000000003	4.43377	0.0162803	0.0153007	0.108569	0.101453
chr11	67394567	67394660	4815034	0	+	0.430108	(0.408,0.44]	chr11	448411	4	INTRON	INTRON	RAD9A	ENSG00000172613.8	ENST00000543808.5:ENST00000538013.5:ENST00000544620.5:ENST00000542139.1:ENST00000307980.7:ENST00000530934.5:ENST00000529100.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	45	2	1.93243	3.58872	5.24501	0.0441194	0.00137378	0.162255	0.0336718
chr19	9836948	9837044	7011950	0	+	0.416667	(0.408,0.44]	chr19	696358	17	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	PIN1	ENSG00000127445.14	ENST00000247970.9:ENST00000587625.5:ENST00000586025.5:ENST00000590540.5:ENST00000588695.5:ENST00000586352.5:ENST00000585442.5:ENST00000589058.5:ENST00000380889.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	38	2	2.95296	3.588715	4.22447	0.0161655	0.00929354	0.109464	0.0817766
chr9	130702495	130702588	4213802	0	+	0.419355	(0.408,0.44]	chr9	386409	3	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	EXOSC2	ENSG00000130713.17	ENST00000491115.7:ENST00000686102.1:ENST00000691284.1:ENST00000685137.1:ENST00000495699.3:ENST00000688967.1:ENST00000691104.1:ENST00000691926.1:ENST00000693435.1:ENST00000688258.1:ENST00000372358.10:ENST00000546165.6:ENST00000372352.7:ENST00000687420.1:ENST00000693011.1:ENST00000687051.1:ENST00000691425.1:ENST00000693610.1:ENST00000692794.1:ENST00000689890.1:ENST00000372351.7:ENST00000685277.1:ENST00000688364.1:ENST00000689662.1:ENST00000430138.7:ENST00000467138.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	38	2	2.95296	3.588715	4.22447	0.0161655	0.00929354	0.109464	0.0817766
chr15	64376143	64376242	6205037	0	-	0.535354	(0.515,0.57]	chr15	591795	20	INTRON	INTRON	ENSG00000259316:PCLAF	ENSG00000259316.12:ENSG00000166803.14	ENST00000634318.1:ENST00000635704.1:ENST00000634529.1:ENST00000635511.1:ENST00000635605.1:ENST00000635593.1:ENST00000635320.1:ENST00000300035.9:ENST00000380258.6:ENST00000559519.5:ENST00000558008.3:ENST00000558043.5:ENST00000560234.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	85	2	3.25212	3.58856	3.925	2.5577e-4	8.71525e-5	0.0148225	0.00783545
chr3	37124956	37125055	1656117	0	-	0.353535	(0.35,0.378]	chr3	169995	29	INTRON	INTRON	LRRFIP2	ENSG00000093167.18	ENST00000336686.9:ENST00000354379.8:ENST00000421276.6:ENST00000396428.6:ENST00000440230.5:ENST00000416425.5:ENST00000461672.5:ENST00000438374.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	84	2	1.48516	3.5885249999999997	5.69189	0.0259086	3.71413e-4	0.133676	0.0178698
chr17	59959871	59959969	6803198	0	-	0.408163	(0.378,0.408]	chr17	672008	6	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	RNFT1	ENSG00000189050.16	ENST00000305783.13:ENST00000482446.5:ENST00000466544.5:ENST00000484257.1:ENST00000589113.1:ENST00000493737.5:ENST00000586083.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	49	2	1.94681	3.58846	5.23011	0.0457723	5.72873e-4	0.149888	0.0217398
chr4	176320901	176320999	2083103	0	+	0.397959	(0.378,0.408]	chr4	205874	8	EXON_MRNA	EXON_MRNA:INTRON	SPCS3	ENSG00000129128.13	ENST00000503362.2:ENST00000507678.5:ENST00000513139.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	189	2	3.56104	3.588435	3.61583	8.22789e-5	1.11439e-6	0.00812487	6.05355e-4
chr12	22463329	22463429	5284585	0	-	0.45	(0.44,0.476]	chr12	503487	34	INTRON	INTRON	C2CD5	ENSG00000111731.13	ENST00000333957.8:ENST00000446597.6:ENST00000536386.5:ENST00000396028.6:ENST00000542676.5:ENST00000545552.5:ENST00000539615.1	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	2.49112	3.58838	4.68564	0.0315968	0.00816201	0.144381	0.0766625
chr12	79903206	79903306	5376215	0	-	0.46	(0.44,0.476]	chr12	512793	299	INTRON	INTRON	PPP1R12A	ENSG00000058272.19	ENST00000261207.9:ENST00000450142.7:ENST00000437004.6:ENST00000546369.5:ENST00000550107.5:ENST00000547330.5:ENST00000550510.5	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	2.49112	3.58838	4.68564	0.0315968	0.00816201	0.144381	0.0766625
chr15	78543817	78543910	6068505	0	+	0.462366	(0.44,0.476]	chr15	578094	1	EXON_LNCRNA	EXON_LNCRNA:SS3_PROX:INTRON	PSMA4	ENSG00000041357.16	ENST00000560217.5:ENST00000559082.5:ENST00000413382.6:ENST00000559948.5:ENST00000559146.5:ENST00000044462.12:ENST00000559934.5:ENST00000558639.5:ENST00000560099.5:ENST00000557929.5:ENST00000558281.5:ENST00000559365.5:ENST00000558341.5:ENST00000559437.5:ENST00000560737.5:ENST00000559906.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	33	2	2.49112	3.58838	4.68564	0.0315968	0.00816201	0.144381	0.0766625
chr18	12964995	12965094	6876330	0	+	0.444444	(0.44,0.476]	chr18	681295	1	INTRON	INTRON	SEH1L	ENSG00000085415.16	ENST00000262124.15:ENST00000399892.7:ENST00000585730.5:ENST00000589446.5:ENST00000587761.1:ENST00000588251.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	33	2	2.49112	3.58838	4.68564	0.0315968	0.00816201	0.144381	0.0766625
chr19	3121261	3121344	6998810	0	+	0.46988	(0.44,0.476]	chr19	694072	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GNA11	ENSG00000088256.9	ENST00000078429.9:ENST00000587636.1:ENST00000590534.1:ENST00000586180.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	33	2	2.49112	3.58838	4.68564	0.0315968	0.00816201	0.144381	0.0766625
chr22	36518172	36518262	7585708	0	-	0.466667	(0.44,0.476]	chr22	776306	3	INTRON	INTRON	EIF3D	ENSG00000100353.18	ENST00000216190.13:ENST00000405442.5:ENST00000458572.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	33	2	2.49112	3.58838	4.68564	0.0315968	0.00816201	0.144381	0.0766625
chr9	135877832	135877932	4371970	0	-	0.45	(0.44,0.476]	chr9	402479	109	INTRON	INTRON	CAMSAP1	ENSG00000130559.19	ENST00000389532.9:ENST00000312405.10:ENST00000409386.3:ENST00000468150.1:ENST00000460094.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	33	2	2.49112	3.58838	4.68564	0.0315968	0.00816201	0.144381	0.0766625
chr10	69140635	69140735	4444715	0	+	0.47	(0.44,0.476]	chr10	410023	72	INTRON	INTRON	VPS26A	ENSG00000122958.15	ENST00000373382.5:ENST00000395098.5:ENST00000489656.5:ENST00000263559.11:ENST00000497564.5:ENST00000490696.5:ENST00000467852.1:ENST00000489794.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	118	2	2.61896	3.5883599999999998	4.55776	0.0017827	2.5822e-6	0.0379201	0.00102358
chr10	68427951	68428050	4639315	0	-	0.545455	(0.515,0.57]	chr10	426660	47	INTRON	INTRON	DNA2	ENSG00000138346.15	ENST00000358410.8:ENST00000551118.6:ENST00000399179.6:ENST00000399180.3:ENST00000440722.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	57	2	1.44089	3.588255	5.73562	0.0617046	6.01042e-5	0.193423	0.00680853
chr10	21644790	21644890	4405528	0	+	0.49	(0.476,0.515]	chr10	406487	197	INTRON	INTRON	MLLT10	ENSG00000078403.17	ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000651298.1:ENST00000377059.7:ENST00000652258.1:ENST00000651382.1:ENST00000438473.6:ENST00000650921.1:ENST00000651405.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	35	2	2.3223	3.588045	4.85379	0.0519312	0.00234214	0.159306	0.0442989
chr13	111247892	111247992	5545648	0	+	0.51	(0.476,0.515]	chr13	529812	32	INTRON	INTRON	ARHGEF7	ENSG00000102606.19	ENST00000317133.9:ENST00000375739.6:ENST00000375741.6:ENST00000646102.2:ENST00000469877.5:ENST00000466143.5:ENST00000218789.9:ENST00000375736.8:ENST00000426073.6:ENST00000375723.5:ENST00000483189.1:ENST00000478679.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	35	2	2.3223	3.588045	4.85379	0.0519312	0.00234214	0.159306	0.0442989
chr16	84989459	84989545	6533948	0	-	0.476744	(0.476,0.515]	chr16	633137	2	INTRON	INTRON	ZDHHC7	ENSG00000153786.13	ENST00000313732.9:ENST00000344861.9:ENST00000564466.5:ENST00000569488.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	35	2	2.3223	3.588045	4.85379	0.0519312	0.00234214	0.159306	0.0442989
chr4	86964045	86964144	1994086	0	+	0.494949	(0.476,0.515]	chr4	199032	151	INTRON	INTRON	AFF1	ENSG00000172493.23	ENST00000504956.5:ENST00000395146.9:ENST00000507468.5:ENST00000674009.1:ENST00000503477.5:ENST00000511996.5:ENST00000511442.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	35	2	2.3223	3.588045	4.85379	0.0519312	0.00234214	0.159306	0.0442989
chr4	143881108	143881208	2251249	0	-	0.51	(0.476,0.515]	chr4	219936	2	INTRON	INTRON	GYPE	ENSG00000197465.14	ENST00000358615.9:ENST00000506264.5:ENST00000437468.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	35	2	2.3223	3.588045	4.85379	0.0519312	0.00234214	0.159306	0.0442989
chr5	34180093	34180192	2599885	0	-	0.515152	(0.476,0.515]	chr5	247047	6	INTRON	INTRON	GUSBP18	ENSG00000215158.9	ENST00000514048.5:ENST00000507274.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	1	35	2	2.3223	3.588045	4.85379	0.0519312	0.00234214	0.159306	0.0442989
chr21	33535820	33535918	7441332	0	-	0.459184	(0.44,0.476]	chr21	759491	1	INTRON	INTRON	GART	ENSG00000159131.17	ENST00000381839.7:ENST00000381831.7:ENST00000424203.5:ENST00000381815.9:ENST00000361093.9:ENST00000430874.5:ENST00000426819.5:ENST00000476524.1:ENST00000438059.5:ENST00000441403.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	36	2	2.74063	3.5879399999999997	4.43525	0.0176095	0.00897296	0.105143	0.0849778
chr3	14419141	14419240	1369558	0	+	0.464646	(0.44,0.476]	chr3	144318	23	INTRON	INTRON	SLC6A6	ENSG00000131389.18	ENST00000613060.4:ENST00000618278.4:ENST00000610642.4:ENST00000649500.1:ENST00000622186.5:ENST00000621751.4:ENST00000613930.4:ENST00000622176.4:ENST00000615188.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	36	2	2.74063	3.5879399999999997	4.43525	0.0176095	0.00897296	0.105143	0.0849778
chr7	98283010	98283110	3358961	0	+	0.47	(0.44,0.476]	chr7	313323	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	BRI3	ENSG00000164713.10	ENST00000456357.6:ENST00000539286.5:ENST00000297290.4:ENST00000473967.1:ENST00000491463.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	36	2	2.74063	3.5879399999999997	4.43525	0.0176095	0.00897296	0.105143	0.0849778
chr16	58627063	58627162	6496358	0	-	0.40404	(0.378,0.408]	chr16	628651	19	INTRON	INTRON	CNOT1	ENSG00000125107.19	ENST00000317147.10:ENST00000569240.5:ENST00000567188.5:ENST00000441024.6:ENST00000565605.5:ENST00000564557.1:ENST00000569916.1:ENST00000569020.5:ENST00000568158.1:ENST00000569263.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	45	2	2.29798	3.5878	4.87762	0.0147606	0.00553849	0.106702	0.0648867
chr19	32474550	32474649	7049475	0	+	0.393939	(0.378,0.408]	chr19	702897	54	INTRON	INTRON	DPY19L3	ENSG00000178904.19	ENST00000392250.7:ENST00000586987.5:ENST00000342179.9:ENST00000588648.7:ENST00000592142.5:ENST00000592832.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	34	2	2.85854	3.587765	4.31699	0.0250408	0.0107837	0.12011	0.0920575
chr7	158767253	158767353	3689183	0	-	0.4	(0.378,0.408]	chr7	342382	2	SS5_PROX	SS5_PROX:INTRON	ESYT2	ENSG00000117868.18	ENST00000251527.10:ENST00000275418.13:ENST00000652148.1	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	2.85854	3.587765	4.31699	0.0250408	0.0107837	0.12011	0.0920575
chr9	122291348	122291448	4194378	0	+	0.39	(0.378,0.408]	chr9	382694	2	SS3_PROX	SS3_PROX:INTRON	MRRF	ENSG00000148187.18	ENST00000297908.7:ENST00000344641.8:ENST00000373723.9:ENST00000373729.5:ENST00000373728.6:ENST00000470366.5:ENST00000467864.5:ENST00000489572.5:ENST00000394315.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	34	2	2.85854	3.587765	4.31699	0.0250408	0.0107837	0.12011	0.0920575
chr1	15516124	15516223	380672	0	-	0.50505	(0.476,0.515]	chr1	44643	79	INTRON	INTRON	CASP9	ENSG00000132906.18	ENST00000546424.5:ENST00000333868.10:ENST00000348549.9:ENST00000400777.7:ENST00000375890.8:ENST00000474305.2:ENST00000447522.5:ENST00000440484.1:ENST00000546969.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	35	2	2.56033	3.5877600000000003	4.61519	0.0287634	0.00528365	0.127066	0.0656295
chr12	64672596	64672696	5155619	0	+	0.51	(0.476,0.515]	chr12	488093	611	INTRON	INTRON	RASSF3	ENSG00000153179.13	ENST00000637125.1:ENST00000542104.6:ENST00000283172.8:ENST00000336061.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	35	2	2.56033	3.5877600000000003	4.61519	0.0287634	0.00528365	0.127066	0.0656295
chr16	21628902	21629002	6319240	0	+	0.51	(0.476,0.515]	chr16	604937	34	INTRON	INTRON	METTL9	ENSG00000197006.15	ENST00000567404.5:ENST00000396014.8:ENST00000358154.8:ENST00000568826.1	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	2.56033	3.5877600000000003	4.61519	0.0287634	0.00528365	0.127066	0.0656295
chr21	43972089	43972188	7414873	0	+	0.50505	(0.476,0.515]	chr21	755762	2	INTRON	INTRON	AGPAT3	ENSG00000160216.21	ENST00000291572.13:ENST00000398061.5:ENST00000327505.6:ENST00000398063.6:ENST00000398058.5:ENST00000546158.1:ENST00000479117.5:ENST00000467358.5:ENST00000484865.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	35	2	2.56033	3.5877600000000003	4.61519	0.0287634	0.00528365	0.127066	0.0656295
chr17	32363184	32363284	6598117	0	+	0.5	(0.476,0.515]	chr17	641918	2	SS5_PROX	SS5_PROX:INTRON	ZNF207	ENSG00000010244.19	ENST00000321233.10:ENST00000394673.6:ENST00000394670.9:ENST00000342555.10:ENST00000577908.5:ENST00000394679.9:ENST00000581531.5:ENST00000579416.1:ENST00000582705.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	50	2	2.93046	3.587735	4.24501	0.0247713	0.00118985	0.12011	0.031662
chr7	157268230	157268325	3455265	0	+	0.347368	(0.32,0.35]	chr7	323030	6	UTR3	UTR3:EXON_MRNA	UBE3C	ENSG00000009335.18	ENST00000348165.10:ENST00000470408.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	87	2	3.3721	3.58765	3.8032	0.00182912	4.69031e-4	0.0396683	0.0200452
chr6	166993240	166993339	3264571	0	-	0.343434	(0.32,0.35]	chr6	303067	201	INTRON	INTRON	ENSG00000227598	ENSG00000227598.1	ENST00000444102.1	lncRNA	lncRNA	lncRNA	lncRNA	2	53	2	1.94202	3.587645	5.23327	0.0486128	9.33826e-4	0.153946	0.0278746
chr3	185923009	185923107	1886447	0	-	0.591837	(0.57,1]	chr3	188621	10	EXON_MRNA	EXON_MRNA:INTRON	TRA2B	ENSG00000136527.19	ENST00000453386.7:ENST00000492417.5:ENST00000463328.5:ENST00000259043.11:ENST00000487615.5:ENST00000466832.5:ENST00000456380.5:ENST00000382191.4:ENST00000465245.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	54	2	3.01672	3.5875950000000003	4.15847	5.94133e-4	1.26324e-5	0.0221865	0.00281675
chr22	19051127	19051226	7551289	0	-	0.393939	(0.378,0.408]	chr22	771857	21	INTRON	INTRON	DGCR2	ENSG00000070413.20	ENST00000537045.5:ENST00000545799.5:ENST00000263196.12:ENST00000389262.8:ENST00000467659.1:ENST00000608548.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	45	2	2.11103	3.587575	5.06412	0.0266911	0.0030522	0.134419	0.0493883
chr18	21742411	21742511	6879748	0	+	0.42	(0.408,0.44]	chr18	681868	2	INTRON	INTRON	MIB1	ENSG00000101752.13	ENST00000578646.5:ENST00000261537.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	53	2	1.9831	3.5875600000000003	5.19202	0.018491	0.0016671	0.116694	0.0369207
chr17	81558763	81558862	6848788	0	-	0.575758	(0.57,1]	chr17	678104	20	UTR3	UTR3:EXON_MRNA	NPLOC4	ENSG00000182446.14	ENST00000331134.11:ENST00000572760.5	protein_coding	protein_coding	protein_coding	protein_coding	8	127	2	3.43032	3.587505	3.74469	1.302e-6	7.14083e-8	7.42638e-4	1.16459e-4
chr3	177078531	177078631	1871242	0	-	0.38	(0.378,0.408]	chr3	187369	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	TBL1XR1	ENSG00000177565.18	ENST00000457928.7:ENST00000430069.5:ENST00000673974.1:ENST00000631253.2:ENST00000352800.10:ENST00000422442.6:ENST00000428970.5:ENST00000424913.5:ENST00000437738.5:ENST00000431421.5:ENST00000635794.1:ENST00000630796.2:ENST00000450267.5:ENST00000630833.2:ENST00000431674.5:ENST00000422066.5:ENST00000443315.5:ENST00000627825.2:ENST00000427349.5:ENST00000413084.5:ENST00000637137.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	54	2	1.94559	3.587415	5.22924	0.0211434	0.00172721	0.122929	0.0374701
chr6	20424024	20424124	2827669	0	+	0.5	(0.476,0.515]	chr6	265575	198	INTRON	INTRON	E2F3	ENSG00000112242.16	ENST00000346618.8:ENST00000535432.2	protein_coding	protein_coding	protein_coding	protein_coding	3	53	2	1.96833	3.58739	5.20645	0.0195007	0.00136049	0.119967	0.0336321
chr20	62040805	62040905	7360667	0	-	0.42	(0.408,0.44]	chr20	750714	257	INTRON	INTRON	TAF4	ENSG00000130699.20	ENST00000252996.9:ENST00000608887.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	37	2	2.84077	3.587385	4.334	0.0132196	0.011982	0.0962115	0.0940535
chr1	201994759	201994857	292629	0	+	0.387755	(0.378,0.408]	chr1	33706	49	INTRON	INTRON	RNPEP	ENSG00000176393.11	ENST00000481780.5:ENST00000295640.9:ENST00000367286.7:ENST00000487116.5:ENST00000492587.5:ENST00000471105.5:ENST00000447312.5:ENST00000478617.5:ENST00000479726.5:ENST00000492849.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	76	2	3.23708	3.5871000000000004	3.93712	0.00365053	1.09377e-4	0.0535094	0.00884858
chr16	72504643	72504742	6517703	0	-	0.383838	(0.378,0.408]	chr16	631334	123	INTRON	INTRON	LINC01572	ENSG00000261008.8	ENST00000624829.4:ENST00000561611.2:ENST00000656218.1:ENST00000666555.2:ENST00000664155.1:ENST00000657725.1:ENST00000563770.5:ENST00000668081.1	lncRNA	lncRNA	lncRNA	lncRNA	1	34	2	2.36428	3.58698	4.80968	0.0441088	0.00679828	0.162255	0.0711802
chr2	233390683	233390783	1040192	0	+	0.39	(0.378,0.408]	chr2	110995	2	SS5_PROX	SS5_PROX:INTRON	DGKD	ENSG00000077044.11	ENST00000264057.7:ENST00000427930.5:ENST00000442524.4:ENST00000447484.5:ENST00000409813.7	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	2.36428	3.58698	4.80968	0.0441088	0.00679828	0.162255	0.0711802
chr4	183693147	183693247	2086519	0	+	0.4	(0.378,0.408]	chr4	206244	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TRAPPC11	ENSG00000168538.16	ENST00000357207.8:ENST00000334690.11:ENST00000505676.5:ENST00000512476.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	34	2	2.36428	3.58698	4.80968	0.0441088	0.00679828	0.162255	0.0711802
chr7	73182248	73182339	3331285	0	+	0.406593	(0.378,0.408]	chr7	309759	1	SS5_PROX	SS5_PROX:INTRON	GTF2IP4	ENSG00000233369.7	ENST00000544802.5:ENST00000453092.3	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript:transcribed_processed_pseudogene	1	34	2	2.36428	3.58698	4.80968	0.0441088	0.00679828	0.162255	0.0711802
chr6	156998123	156998223	3009374	0	+	0.4	(0.378,0.408]	chr6	281130	126	INTRON	INTRON	ARID1B	ENSG00000049618.24	ENST00000346085.10:ENST00000636930.2:ENST00000647938.1:ENST00000350026.10:ENST00000674298.1:ENST00000674190.1:ENST00000414678.7:ENST00000319584.11:ENST00000452544.2:ENST00000637887.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	76	2	3.56208	3.58683	3.61158	8.34292e-4	6.94246e-4	0.0266389	0.0240761
chr16	29515185	29515285	6470717	0	-	0.45	(0.44,0.476]	chr16	625147	93	INTRON	INTRON	ENSG00000288632	ENSG00000288632.1	ENST00000675579.1	lncRNA	lncRNA	lncRNA	lncRNA	3	98	2	3.17172	3.5868200000000003	4.00192	5.10693e-4	7.32704e-5	0.020816	0.00714177
chr1	207352219	207352318	303583	0	+	0.383838	(0.378,0.408]	chr1	34932	43	INTRON	INTRON	CD55	ENSG00000196352.18	ENST00000695822.1:ENST00000695823.1:ENST00000695826.1:ENST00000695825.1:ENST00000695827.1:ENST00000645323.1:ENST00000391921.9:ENST00000367064.9:ENST00000314754.12:ENST00000644836.1:ENST00000476590.1:ENST00000465534.5:ENST00000618707.2:ENST00000635614.2:ENST00000695831.1:ENST00000634386.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	101	2	3.49733	3.58671	3.67609	6.32264e-4	6.46714e-5	0.0231174	0.00666922
chr1	91506269	91506368	161162	0	+	0.494949	(0.476,0.515]	chr1	17379	41	INTRON	INTRON	CDC7	ENSG00000097046.13	ENST00000234626.11:ENST00000428239.5:ENST00000426137.1:ENST00000497611.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	33	2	2.73205	3.586665	4.44128	0.0159328	0.0151924	0.109464	0.0994339
chr13	95285181	95285281	5639717	0	-	0.49	(0.476,0.515]	chr13	537181	154	INTRON	INTRON	ABCC4	ENSG00000125257.16	ENST00000645237.2:ENST00000643051.1:ENST00000643842.1:ENST00000646439.1:ENST00000643816.1:ENST00000536256.3:ENST00000643556.1:ENST00000629385.1:ENST00000642524.1:ENST00000645532.1:ENST00000644471.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	33	2	2.73205	3.586665	4.44128	0.0159328	0.0151924	0.109464	0.0994339
chr9	97659612	97659705	4172880	0	+	0.483871	(0.476,0.515]	chr9	380212	5	INTRON	INTRON	NCBP1	ENSG00000136937.13	ENST00000375147.8	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	2.73205	3.586665	4.44128	0.0159328	0.0151924	0.109464	0.0994339
chr9	98734238	98734337	4301607	0	-	0.515152	(0.476,0.515]	chr9	395564	18	UTR3	UTR3:EXON_MRNA:INTRON	ANKS6	ENSG00000165138.18	ENST00000444472.5:ENST00000375019.6:ENST00000353234.5:ENST00000634393.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	33	2	2.73205	3.586665	4.44128	0.0159328	0.0151924	0.109464	0.0994339
chrX	52899249	52899346	7663561	0	+	0.494845	(0.476,0.515]	chrX	784614	21	UTR5	UTR5:EXON_MRNA:SS3_PROX:INTRON	FAM156B	ENSG00000179304.18	ENST00000610405.4:ENST00000619346.4:ENST00000610609.4:ENST00000612188.4:ENST00000616419.4:ENST00000416841.8:ENST00000593751.7	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	2.73205	3.586665	4.44128	0.0159328	0.0151924	0.109464	0.0994339
chr19	11112039	11112139	7017054	0	+	0.47	(0.44,0.476]	chr19	697463	4	SS5_PROX	SS5_PROX:INTRON	LDLR	ENSG00000130164.14	ENST00000557933.5:ENST00000558518.6:ENST00000545707.5:ENST00000535915.5:ENST00000455727.6:ENST00000558013.5:ENST00000252444.9:ENST00000560467.1:ENST00000560173.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	75	2	3.36231	3.58666	3.81101	0.00161678	3.0729e-4	0.0369204	0.0161362
chr6	149581123	149581223	2995821	0	+	0.44	(0.408,0.44]	chr6	280304	4	SS5_PROX	SS5_PROX:INTRON	GINM1	ENSG00000055211.14	ENST00000650599.1:ENST00000367419.10:ENST00000433539.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	61	2	1.60344	3.586585	5.56973	0.0387506	3.81714e-4	0.160156	0.0181283
chr3	19968447	19968547	1376249	0	+	0.47	(0.44,0.476]	chr3	145051	152	INTRON	INTRON	RAB5A	ENSG00000144566.11	ENST00000273047.9:ENST00000412966.5:ENST00000446547.5:ENST00000422242.1:ENST00000469122.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	44	2	2.27304	3.58652	4.9	0.0158915	0.00423315	0.109464	0.0572185
chr8	9024532	9024631	3695781	0	+	0.454545	(0.44,0.476]	chr8	342937	37	INTRON	INTRON	ERI1	ENSG00000104626.15	ENST00000519292.5:ENST00000250263.8:ENST00000520332.5:ENST00000518663.1:ENST00000522612.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	44	2	2.27304	3.58652	4.9	0.0158915	0.00423315	0.109464	0.0572185
chr2	151424054	151424153	893352	0	+	0.40404	(0.378,0.408]	chr2	98908	4	INTRON	INTRON	RIF1	ENSG00000080345.18	ENST00000453091.6:ENST00000428287.6:ENST00000444746.7:ENST00000243326.9:ENST00000414861.6:ENST00000430328.6	protein_coding	protein_coding	protein_coding	protein_coding	8	248	2	3.15196	3.58651	4.02106	2.39982e-5	2.62048e-7	0.00402226	2.52144e-4
chr2	15391753	15391852	1071443	0	-	0.323232	(0.32,0.35]	chr2	114321	81	INTRON	INTRON	NBAS	ENSG00000151779.13	ENST00000281513.10:ENST00000442506.5:ENST00000441755.5	protein_coding	protein_coding	protein_coding	protein_coding	1	39	2	2.30673	3.586475	4.86622	0.0584434	0.00354075	0.167723	0.0546236
chr12	107701034	107701134	5218914	0	+	0.35	(0.32,0.35]	chr12	494023	12	INTRON	INTRON	PWP1	ENSG00000136045.12	ENST00000412830.8:ENST00000541166.1	protein_coding	protein_coding	protein_coding	protein_coding	1	39	2	2.37794	3.58638	4.79482	0.0498601	0.00447781	0.156383	0.0610799
chr15	41033026	41033126	6152379	0	-	0.35	(0.32,0.35]	chr15	585297	49	INTRON	INTRON	INO80	ENSG00000128908.18	ENST00000648947.1:ENST00000401393.7:ENST00000558357.6:ENST00000559995.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	39	2	2.37794	3.58638	4.79482	0.0498601	0.00447781	0.156383	0.0610799
chr7	32919560	32919658	3515682	0	-	0.326531	(0.32,0.35]	chr7	327808	8	INTRON	INTRON	RP9P	ENSG00000205763.14	ENST00000381639.3:ENST00000450133.5:ENST00000685019.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	1	39	2	2.37794	3.58638	4.79482	0.0498601	0.00447781	0.156383	0.0610799
chr1	246006860	246006960	675699	0	-	0.49	(0.476,0.515]	chr1	79713	184	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000391836.3:ENST00000464398.1:ENST00000453676.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	33	2	2.47949	3.586345	4.6932	0.0326974	0.00753088	0.145164	0.074841
chr14	60279337	60279435	5736512	0	+	0.479592	(0.476,0.515]	chr14	544843	16	INTRON	INTRON	PPM1A	ENSG00000100614.18	ENST00000325642.7:ENST00000531143.6:ENST00000532036.2:ENST00000395076.9:ENST00000325658.3:ENST00000528241.2:ENST00000525399.2:ENST00000531937.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	33	2	2.47949	3.586345	4.6932	0.0326974	0.00753088	0.145164	0.074841
chr17	7235127	7235227	6718458	0	-	0.48	(0.476,0.515]	chr17	658734	2	UTR3	UTR3:EXON_MRNA	PHF23	ENSG00000040633.13	ENST00000571362.5:ENST00000320316.8:ENST00000576955.5	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	2.47949	3.586345	4.6932	0.0326974	0.00753088	0.145164	0.074841
chr19	52896736	52896827	7208879	0	-	0.483516	(0.476,0.515]	chr19	731702	6	INTRON	INTRON	ZNF320	ENSG00000182986.15	ENST00000673631.1:ENST00000594408.3:ENST00000682928.1:ENST00000595635.5:ENST00000593618.5:ENST00000594741.5:ENST00000597111.5:ENST00000601334.5:ENST00000597856.1:ENST00000596215.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	33	2	2.47949	3.586345	4.6932	0.0326974	0.00753088	0.145164	0.074841
chr3	150565921	150566019	1534225	0	+	0.489796	(0.476,0.515]	chr3	159878	3	INTRON	INTRON	EIF2A	ENSG00000144895.12	ENST00000487799.5:ENST00000494558.5:ENST00000460851.6:ENST00000406576.7:ENST00000482093.5:ENST00000273435.9:ENST00000462221.5:ENST00000477551.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	33	2	2.47949	3.586345	4.6932	0.0326974	0.00753088	0.145164	0.074841
chr1	38992995	38993094	74415	0	+	0.424242	(0.408,0.44]	chr1	9628	10	INTRON	INTRON	AKIRIN1	ENSG00000174574.16	ENST00000432648.8:ENST00000372984.8:ENST00000446189.6:ENST00000531822.1	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	2.74518	3.5861549999999998	4.42713	0.0173083	0.0152229	0.108535	0.104099
chr1	211797186	211797286	631072	0	-	0.43	(0.408,0.44]	chr1	74654	36	INTRON	INTRON	LPGAT1	ENSG00000123684.13	ENST00000366997.9:ENST00000366996.1	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	2.74518	3.5861549999999998	4.42713	0.0173083	0.0152229	0.108535	0.104099
chr10	63460199	63460298	4635334	0	-	0.434343	(0.408,0.44]	chr10	426236	794	INTRON	INTRON	JMJD1C	ENSG00000171988.20	ENST00000399262.7:ENST00000633035.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	33	2	2.74518	3.5861549999999998	4.42713	0.0173083	0.0152229	0.108535	0.104099
chr14	103447524	103447623	5826257	0	+	0.434343	(0.408,0.44]	chr14	552839	56	INTRON	INTRON	MARK3	ENSG00000075413.19	ENST00000678179.1:ENST00000676838.1:ENST00000677348.1:ENST00000677404.1:ENST00000676694.1:ENST00000676938.1:ENST00000678619.1:ENST00000676897.1:ENST00000677214.1:ENST00000677942.1:ENST00000676830.1:ENST00000678999.1:ENST00000677228.1:ENST00000556744.2:ENST00000677104.1:ENST00000679330.1:ENST00000560417.6:ENST00000440884.7:ENST00000676475.1:ENST00000677035.1:ENST00000678022.1:ENST00000677560.1:ENST00000561314.6:ENST00000429436.7:ENST00000677118.1:ENST00000676564.1:ENST00000678169.1:ENST00000678175.1:ENST00000678897.1:ENST00000678278.1:ENST00000676645.1:ENST00000677829.1:ENST00000678302.1:ENST00000677133.1:ENST00000561164.2:ENST00000558223.6:ENST00000559328.6:ENST00000678207.1:ENST00000677360.1:ENST00000676905.1:ENST00000678343.1:ENST00000677347.1:ENST00000678071.1:ENST00000677432.1:ENST00000678237.1:ENST00000677604.1:ENST00000676518.1:ENST00000677051.1:ENST00000677857.1:ENST00000677869.1:ENST00000678423.1:ENST00000560603.6:ENST00000416682.6:ENST00000303622.13:ENST00000216288.11:ENST00000679105.1:ENST00000553942.5:ENST00000335102.9:ENST00000561225.1:ENST00000678091.1:ENST00000561071.5:ENST00000558698.5:ENST00000559268.5:ENST00000560731.5:ENST00000676745.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	33	2	2.74518	3.5861549999999998	4.42713	0.0173083	0.0152229	0.108535	0.104099
chr15	64079509	64079608	6202660	0	-	0.434343	(0.408,0.44]	chr15	591577	36	INTRON	INTRON	CIAO2A	ENSG00000166797.11	ENST00000300030.8:ENST00000380290.7:ENST00000559705.1:ENST00000557835.5:ENST00000559950.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	33	2	2.74518	3.5861549999999998	4.42713	0.0173083	0.0152229	0.108535	0.104099
chr9	112314477	112314577	4317769	0	-	0.44	(0.408,0.44]	chr9	397079	162	INTRON	INTRON	PTBP3	ENSG00000119314.16	ENST00000334318.10:ENST00000458258.5:ENST00000374257.6:ENST00000374255.6:ENST00000343327.6:ENST00000487997.1:ENST00000210227.4:ENST00000450374.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	33	2	2.74518	3.5861549999999998	4.42713	0.0173083	0.0152229	0.108535	0.104099
chr1	247196576	247196675	683957	0	-	0.373737	(0.35,0.378]	chr1	80183	52	INTRON	INTRON	ZNF731P	ENSG00000227671.4	ENST00000421406.1	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	2	51	2	1.75561	3.58588	5.41615	0.0739399	3.21724e-4	0.190914	0.0159645
chr13	112541160	112541260	5651237	0	-	0.37	(0.35,0.378]	chr13	538478	133	INTRON	INTRON	TUBGCP3	ENSG00000126216.15	ENST00000261965.8:ENST00000649778.1:ENST00000375669.7:ENST00000462580.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	51	2	1.75561	3.58588	5.41615	0.0739399	3.21724e-4	0.190914	0.0159645
chr1	228220989	228221088	331363	0	+	0.323232	(0.32,0.35]	chr1	38254	10	INTRON	INTRON	OBSCN	ENSG00000154358.23	ENST00000570156.7:ENST00000680850.1:ENST00000284548.16:ENST00000422127.5:ENST00000636476.2:ENST00000662438.1:ENST00000366704.2:ENST00000668066.1	protein_coding	protein_coding	protein_coding	protein_coding	2	53	2	1.83416	3.5858049999999997	5.33745	0.0631198	6.1485e-4	0.176946	0.0223951
chr1	35994044	35994144	71782	0	+	0.42	(0.408,0.44]	chr1	9169	91	INTRON	INTRON	AGO3	ENSG00000126070.20	ENST00000634486.1:ENST00000373191.9:ENST00000246314.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	33	2	2.49258	3.5857599999999996	4.67894	0.0314608	0.0087648	0.144381	0.0788605
chr1	201859494	201859593	292072	0	+	0.414141	(0.408,0.44]	chr1	33589	1	INTRON	INTRON	IPO9	ENSG00000198700.10	ENST00000361565.9	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	2.49258	3.5857599999999996	4.67894	0.0314608	0.0087648	0.144381	0.0788605
chr14	65020194	65020293	5752886	0	+	0.414141	(0.408,0.44]	chr14	546440	33	INTRON	INTRON	CHURC1-FNTB:FNTB	ENSG00000125954.13:ENSG00000257365.8	ENST00000552941.6:ENST00000549987.1:ENST00000246166.3:ENST00000555372.5:ENST00000555742.5:ENST00000554210.5:ENST00000554334.5:ENST00000556709.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	33	2	2.49258	3.5857599999999996	4.67894	0.0314608	0.0087648	0.144381	0.0788605
chr21	46445327	46445415	7422494	0	+	0.409091	(0.408,0.44]	chr21	756962	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	PCNT	ENSG00000160299.18	ENST00000695558.1:ENST00000359568.10:ENST00000480896.5:ENST00000695527.1:ENST00000695528.1:ENST00000695529.1:ENST00000695530.1:ENST00000418394.2:ENST00000695532.1:ENST00000695531.1:ENST00000695533.1:ENST00000695534.1:ENST00000695535.1:ENST00000695536.1:ENST00000695537.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	33	2	2.49258	3.5857599999999996	4.67894	0.0314608	0.0087648	0.144381	0.0788605
chr7	5779584	5779684	3474953	0	-	0.41	(0.408,0.44]	chr7	324929	2	SS5_PROX	SS5_PROX:INTRON	RNF216	ENSG00000011275.19	ENST00000425013.6:ENST00000389902.8:ENST00000411812.1:ENST00000416985.5:ENST00000476345.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	33	2	2.49258	3.5857599999999996	4.67894	0.0314608	0.0087648	0.144381	0.0788605
chr8	104571031	104571131	4014542	0	-	0.34	(0.32,0.35]	chr8	367439	387	INTRON	INTRON	LRP12	ENSG00000147650.12	ENST00000424843.6:ENST00000276654.10:ENST00000520770.1:ENST00000519675.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	53	2	1.99307	3.5856449999999995	5.17822	0.04271	0.00115625	0.148082	0.0313436
chr20	62129484	62129584	7297416	0	+	0.56	(0.515,0.57]	chr20	742209	3	SS3_PROX	SS3_PROX:INTRON	LSM14B	ENSG00000149657.20	ENST00000279068.11:ENST00000400318.6:ENST00000279069.11:ENST00000361670.3	protein_coding	protein_coding	protein_coding	protein_coding	3	50	2	1.60221	3.5856399999999997	5.56907	0.0581855	1.36543e-4	0.188704	0.0106702
chr7	127742995	127743095	3403320	0	+	0.41	(0.408,0.44]	chr7	318134	212	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000468166.5:ENST00000465900.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	74	2	3.20034	3.58554	3.97074	0.00398025	8.66152e-5	0.0549214	0.00783027
chr16	2132074	2132174	6431316	0	-	0.51	(0.476,0.515]	chr16	618727	123	INTRON	INTRON	PKD1	ENSG00000008710.20	ENST00000262304.9:ENST00000423118.5	protein_coding	protein_coding	protein_coding	protein_coding	2	48	2	2.31726	3.585525	4.85379	0.015077	0.00234214	0.0994339	0.0442989
chr16	58623181	58623225	6496316	0	-	0.340909	(0.32,0.35]	chr16	628640	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	CNOT1	ENSG00000125107.19	ENST00000317147.10:ENST00000569240.5:ENST00000567188.5:ENST00000441024.6:ENST00000565605.5:ENST00000564557.1:ENST00000569916.1:ENST00000565697.1:ENST00000569020.5:ENST00000568158.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	155	2	2.73007	3.58552	4.44097	3.84645e-4	2.23618e-5	0.0177489	0.00386054
chr21	45496099	45496199	7420455	0	+	0.6	(0.57,1]	chr21	756552	2	SS3_PROX	SS3_PROX:INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1:ENST00000355480.10:ENST00000359759.8:ENST00000342220.9:ENST00000459895.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	29	2	2.28103	3.5855050000000004	4.88998	0.0151554	4.016e-4	0.108535	0.0185763
chr9	137643561	137643660	4223719	0	+	0.585859	(0.57,1]	chr9	388158	56	INTRON	INTRON	EHMT1	ENSG00000181090.21	ENST00000462484.5:ENST00000371394.6:ENST00000630754.2:ENST00000460843.6:ENST00000626216.2:ENST00000637593.1:ENST00000629335.2:ENST00000637335.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	29	2	2.28103	3.5855050000000004	4.88998	0.0151554	4.016e-4	0.108535	0.0185763
chr16	29589993	29590093	6471500	0	-	0.41	(0.408,0.44]	chr16	625297	203	INTRON	INTRON	ENSG00000288632:SMG1P2	ENSG00000288632.1:ENSG00000205534.6	ENST00000675579.1:ENST00000566127.1	lncRNA	lncRNA	lncRNA:transcribed_unprocessed_pseudogene	lncRNA:transcribed_unprocessed_pseudogene	4	66	2	1.4947	3.585425	5.67615	0.0566065	6.28788e-5	0.167352	0.00658818
chr16	4763351	4763446	6438432	0	-	0.410526	(0.408,0.44]	chr16	620069	2	INTRON	INTRON	ZNF500	ENSG00000103199.14	ENST00000219478.11:ENST00000545009.1:ENST00000589422.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	99	2	3.20009	3.5854150000000002	3.97074	4.59843e-4	8.66152e-5	0.01978	0.00783027
chr16	8851150	8851250	6285204	0	+	0.51	(0.476,0.515]	chr16	601872	1	SS5_PROX	SS5_PROX:INTRON	PMM2	ENSG00000140650.13	ENST00000683094.1:ENST00000683274.1:ENST00000682393.1:ENST00000683761.1:ENST00000565934.2	protein_coding	retained_intron	protein_coding	retained_intron:nonsense_mediated_decay	3	53	2	1.86014	3.5853599999999997	5.31058	0.0277606	9.15544e-4	0.137011	0.0278396
chr18	737261	737361	6939943	0	-	0.51	(0.476,0.515]	chr18	686466	3	SS3_PROX	SS3_PROX:INTRON	YES1	ENSG00000176105.14	ENST00000584307.5:ENST00000314574.5:ENST00000577961.5	protein_coding	protein_coding	protein_coding	protein_coding	3	53	2	1.86014	3.5853599999999997	5.31058	0.0277606	9.15544e-4	0.137011	0.0278396
chr7	2788120	2788220	3468888	0	-	0.51	(0.476,0.515]	chr7	324339	249	INTRON	INTRON	GNA12	ENSG00000146535.14	ENST00000275364.8:ENST00000407904.7:ENST00000471281.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	53	2	1.86014	3.5853599999999997	5.31058	0.0277606	9.15544e-4	0.137011	0.0278396
chr12	122874552	122874652	5442361	0	-	0.44	(0.408,0.44]	chr12	520621	36	EXON_MRNA	EXON_MRNA:INTRON	VPS37B:ENSG00000280138	ENSG00000139722.7:ENSG00000280138.1	ENST00000267202.7:ENST00000535765.5:ENST00000371248.3:ENST00000623210.1	protein_coding	protein_coding	protein_coding:TEC	protein_coding:TEC	2	44	2	2.21238	3.585275	4.95817	0.0193525	0.00372419	0.119831	0.0535094
chr15	83568872	83568972	6083204	0	+	0.41	(0.408,0.44]	chr15	579068	2	SS5_PROX	SS5_PROX:INTRON	SH3GL3	ENSG00000140600.17	ENST00000427482.7:ENST00000563901.5:ENST00000324537.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	44	2	2.21238	3.585275	4.95817	0.0193525	0.00372419	0.119831	0.0535094
chr22	19120529	19120628	7551996	0	-	0.575758	(0.57,1]	chr22	771903	307	INTRON	INTRON	DGCR2	ENSG00000070413.20	ENST00000537045.5:ENST00000545799.5:ENST00000263196.12:ENST00000389262.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	104	2	2.96015	3.5852250000000003	4.2103	1.60603e-5	1.28093e-7	0.00322239	1.62117e-4
chr7	127913197	127913297	3405029	0	+	0.38	(0.378,0.408]	chr7	318161	80	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000465900.5:ENST00000486037.1:ENST00000484767.5:ENST00000492840.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	72	2	2.04909	3.585185	5.12128	0.0048937	0.00251746	0.0641889	0.0446195
chr8	53992285	53992383	3952997	0	-	0.469388	(0.44,0.476]	chr8	362539	37	INTRON	INTRON	TCEA1	ENSG00000187735.15	ENST00000396401.7:ENST00000521604.7:ENST00000521086.6:ENST00000522635.5:ENST00000522397.5:ENST00000640382.1:ENST00000640041.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	117	2	3.27139	3.5851699999999997	3.89895	2.02261e-4	4.01351e-5	0.0129814	0.00513517
chr1	100081330	100081416	172048	0	+	0.325581	(0.32,0.35]	chr1	18651	3	INTRON	INTRON	ENSG00000283761:MFSD14A	ENSG00000283761.1:ENSG00000156875.14	ENST00000638792.1:ENST00000638968.1:ENST00000639040.1:ENST00000639037.1:ENST00000639171.1:ENST00000640238.1:ENST00000640357.1:ENST00000370152.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	49	2	2.4053	3.5851550000000003	4.76501	0.0114287	0.0108284	0.0920575	0.0886611
chr9	34199561	34199660	4111475	0	+	0.333333	(0.32,0.35]	chr9	374720	78	INTRON	INTRON	UBAP1	ENSG00000165006.14	ENST00000625521.2:ENST00000379186.8:ENST00000297661.9:ENST00000626262.2	protein_coding	protein_coding	protein_coding	protein_coding	2	49	2	2.4053	3.5851550000000003	4.76501	0.0114287	0.0108284	0.0920575	0.0886611
chr1	19077402	19077496	385356	0	-	0.585106	(0.57,1]	chr1	45605	1	SS5_PROX	SS5_PROX:INTRON	UBR4	ENSG00000127481.15	ENST00000375254.8:ENST00000375225.7:ENST00000375224.1:ENST00000459947.5:ENST00000486515.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	22	2	2.79889	3.585125	4.37136	0.0110274	0.00345135	0.0927187	0.0517761
chr6	35355042	35355141	2852103	0	+	0.585859	(0.57,1]	chr6	269491	75	INTRON	INTRON	PPARD	ENSG00000112033.14	ENST00000418635.6:ENST00000448077.6:ENST00000360694.8:ENST00000311565.4:ENST00000337400.6	protein_coding	protein_coding	protein_coding	protein_coding	1	22	2	2.79889	3.585125	4.37136	0.0110274	0.00345135	0.0927187	0.0517761
chr18	9599032	9599132	6946163	0	-	0.19	[0,0.28]	chr18	687037	35	INTRON	INTRON	PPP4R1	ENSG00000154845.16	ENST00000400555.7:ENST00000400556.8:ENST00000285124.12:ENST00000578875.5:ENST00000578178.5:ENST00000583903.5:ENST00000579638.5:ENST00000584074.5:ENST00000579415.5:ENST00000581250.5:ENST00000580745.5:ENST00000582933.5:ENST00000580182.5:ENST00000582240.5:ENST00000581835.1:ENST00000583092.1:ENST00000577779.1:ENST00000580283.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	103	2	3.30695	3.585105	3.86326	0.00469836	3.23716e-4	0.0600108	0.0159645
chr1	151198639	151198728	224867	0	+	0.494382	(0.476,0.515]	chr1	25627	2	UTR5	UTR5:EXON_MRNA:INTRON	PIP5K1A	ENSG00000143398.20	ENST00000447555.5:ENST00000349792.9:ENST00000368888.9:ENST00000409426.5:ENST00000368890.8:ENST00000441902.6:ENST00000424999.1:ENST00000454769.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	97	2	2.9698	3.584965	4.20013	0.00124841	2.43832e-5	0.0323336	0.00386122
chr6	125990770	125990870	2956097	0	+	0.31	(0.28,0.32]	chr6	277973	32	INTRON	INTRON	TRMT11	ENSG00000066651.20	ENST00000479748.5:ENST00000368332.7:ENST00000461129.5:ENST00000648977.1:ENST00000468097.5:ENST00000334379.11:ENST00000473273.1:ENST00000446681.1:ENST00000444121.5:ENST00000489934.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	51	2	2.24061	3.58495	4.92929	0.0194267	0.0098607	0.119831	0.0838128
chr1	8874398	8874473	374260	0	-	0.52	(0.515,0.57]	chr1	43642	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ENO1	ENSG00000074800.16	ENST00000234590.10:ENST00000647408.1:ENST00000646370.2:ENST00000645609.1:ENST00000497492.1:ENST00000646660.1:ENST00000646680.1:ENST00000646906.1:ENST00000646156.1:ENST00000643438.1:ENST00000489867.2:ENST00000486051.5:ENST00000492343.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	235	2	3.28613	3.5848649999999997	3.8836	2.47694e-6	1.65321e-7	0.00100001	1.98188e-4
chr7	156681083	156681182	3685869	0	-	0.313131	(0.28,0.32]	chr7	341973	34	UTR3	UTR3:EXON_MRNA:INTRON	LMBR1	ENSG00000105983.23	ENST00000430825.3:ENST00000353442.10	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	74	2	2.20515	3.5848450000000005	4.96454	0.011946	0.00344078	0.0899583	0.0539802
chr12	116128909	116129009	5424058	0	-	0.33	(0.32,0.35]	chr12	518263	170	INTRON	INTRON	MED13L	ENSG00000123066.9	ENST00000281928.9:ENST00000650226.1:ENST00000548743.2:ENST00000647567.1:ENST00000551197.2	protein_coding	protein_coding	protein_coding	protein_coding	2	51	2	2.6297	3.58479	4.53988	0.0202178	0.00476699	0.109913	0.0636201
chr19	54450789	54450889	7099343	0	+	0.54	(0.515,0.57]	chr19	711970	1	SS3_PROX	SS3_PROX:INTRON	LENG8	ENSG00000167615.17	ENST00000616932.4:ENST00000439657.5:ENST00000326764.10:ENST00000376514.6:ENST00000436479.1:ENST00000443957.5	protein_coding	protein_coding	protein_coding	protein_coding	2	63	2	3.45014	3.5847800000000003	3.71942	0.00116948	2.61221e-4	0.0312127	0.014326
chr3	138754255	138754355	1830690	0	-	0.45	(0.44,0.476]	chr3	184037	111	INTRON	INTRON	PIK3CB	ENSG00000051382.9	ENST00000674063.1:ENST00000289153.6:ENST00000477593.5:ENST00000462898.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	46	2	2.64669	3.584695	4.5227	0.0128818	0.0040295	0.0926667	0.0578376
chrX	3928678	3928777	7747884	0	-	0.535354	(0.515,0.57]	chrX	793164	81	INTRON	INTRON	ENSG00000285756	ENSG00000285756.2	ENST00000650538.1	lncRNA	lncRNA	lncRNA	lncRNA	2	40	2	2.26012	3.58462	4.90912	0.0160033	0.0021669	0.109464	0.0417866
chr7	10598760	10598860	3482767	0	-	0.24	[0,0.28]	chr7	325772	368	INTRON	INTRON	MGC4859	ENSG00000283117.1	ENST00000634803.1	lncRNA	lncRNA	lncRNA	lncRNA	1	45	2	2.38757	3.584495	4.78142	0.0552962	0.00943974	0.165463	0.0861183
chrX	7995882	7995982	7614821	0	+	0.25	[0,0.28]	chrX	779874	661	INTRON	INTRON	ENSG00000285679	ENSG00000285679.2	ENST00000659022.1:ENST00000655333.1	lncRNA	lncRNA	lncRNA	lncRNA	1	45	2	2.38757	3.584495	4.78142	0.0552962	0.00943974	0.165463	0.0861183
chr1	155508231	155508331	562346	0	-	0.34	(0.32,0.35]	chr1	67101	254	INTRON	INTRON	ASH1L	ENSG00000116539.14	ENST00000676814.1:ENST00000392403.8:ENST00000368346.7:ENST00000677213.1:ENST00000678117.1:ENST00000679097.1:ENST00000679333.1:ENST00000677042.1:ENST00000678699.1:ENST00000677825.1:ENST00000679133.1:ENST00000548830.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	36	2	2.71269	3.5844899999999997	4.45629	0.0246089	0.0181461	0.12011	0.114853
chr19	34268412	34268511	7051525	0	+	0.343434	(0.32,0.35]	chr19	703254	24	INTRON	INTRON	GARRE1	ENSG00000166398.14	ENST00000588470.5:ENST00000299505.8:ENST00000589583.5:ENST00000588338.6:ENST00000592124.1:ENST00000585833.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	36	2	2.71269	3.5844899999999997	4.45629	0.0246089	0.0181461	0.12011	0.114853
chr2	28928590	28928687	725529	0	+	0.329897	(0.32,0.35]	chr2	83845	5	INTRON	INTRON	WDR43	ENSG00000163811.12	ENST00000407426.8:ENST00000466067.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	36	2	2.71269	3.5844899999999997	4.45629	0.0246089	0.0181461	0.12011	0.114853
chr21	33532956	33533049	7441302	0	-	0.344086	(0.32,0.35]	chr21	759481	1	INTRON	INTRON	GART	ENSG00000159131.17	ENST00000381839.7:ENST00000381831.7:ENST00000424203.5:ENST00000381815.9:ENST00000361093.9:ENST00000366093.6:ENST00000497313.5:ENST00000430874.5:ENST00000426819.5:ENST00000476524.1:ENST00000488791.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	36	2	2.71269	3.5844899999999997	4.45629	0.0246089	0.0181461	0.12011	0.114853
chrX	111687901	111688001	7702085	0	+	0.34	(0.32,0.35]	chrX	788217	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:INTRON	ALG13	ENSG00000101901.12	ENST00000487141.5:ENST00000371979.7:ENST00000394780.8:ENST00000251943.8:ENST00000610588.4:ENST00000621367.4:ENST00000622997.3:ENST00000624161.3:ENST00000636363.1:ENST00000624881.3:ENST00000468657.5:ENST00000473389.5:ENST00000482374.5:ENST00000492038.5:ENST00000495283.5:ENST00000486353.5:ENST00000623144.3:ENST00000470971.5:ENST00000489033.5:ENST00000623255.1:ENST00000623148.3:ENST00000471924.5:ENST00000436609.5:ENST00000482742.5:ENST00000623189.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	36	2	2.71269	3.5844899999999997	4.45629	0.0246089	0.0181461	0.12011	0.114853
chr6	87536549	87536649	3152091	0	-	0.53	(0.515,0.57]	chr6	294021	13	INTRON	INTRON	RARS2	ENSG00000146282.19	ENST00000691533.1:ENST00000493269.2:ENST00000685069.1:ENST00000691725.1:ENST00000369536.10:ENST00000693431.1:ENST00000685408.1:ENST00000693327.1:ENST00000691205.1:ENST00000689174.1:ENST00000692684.1:ENST00000686988.1:ENST00000690622.1:ENST00000689206.1:ENST00000688532.1:ENST00000686154.1:ENST00000686407.1:ENST00000685701.1:ENST00000689561.1:ENST00000691238.1:ENST00000685336.1:ENST00000686284.1:ENST00000687586.1:ENST00000685376.1:ENST00000685881.1:ENST00000691815.1:ENST00000687090.1:ENST00000451155.2:ENST00000687437.1:ENST00000692394.1:ENST00000687729.1:ENST00000693605.1:ENST00000687909.1:ENST00000688391.1:ENST00000690884.1:ENST00000692843.1:ENST00000684790.1:ENST00000692270.1:ENST00000685219.1:ENST00000689952.1:ENST00000687579.1:ENST00000686857.1:ENST00000690205.1:ENST00000690705.1:ENST00000686142.1:ENST00000688106.1:ENST00000686196.1:ENST00000688842.1:ENST00000687078.1:ENST00000690555.1:ENST00000692934.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	48	2	2.00468	3.5844050000000003	5.16413	0.0166344	8.14815e-4	0.110511	0.0263656
chr2	3433822	3433921	686288	0	+	0.383838	(0.378,0.408]	chr2	80494	88	INTRON	INTRON	TRAPPC12	ENSG00000171853.16	ENST00000382110.6:ENST00000324266.10:ENST00000457845.4:ENST00000441983.5:ENST00000417243.5:ENST00000469147.5:ENST00000441099.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	38	2	2.84663	3.584185	4.32174	0.0133954	0.0132362	0.0999551	0.0946278
chr7	2793919	2794019	3468946	0	-	0.38	(0.378,0.408]	chr7	324339	307	INTRON	INTRON	GNA12	ENSG00000146535.14	ENST00000275364.8:ENST00000407904.7:ENST00000471281.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	38	2	2.84663	3.584185	4.32174	0.0133954	0.0132362	0.0999551	0.0946278
chr17	42708583	42708679	6773879	0	-	0.53125	(0.515,0.57]	chr17	667338	1	SS5_PROX	SS5_PROX:INTRON	EZH1	ENSG00000108799.13	ENST00000415827.6:ENST00000428826.7:ENST00000592743.5:ENST00000588897.5:ENST00000590078.5:ENST00000585893.5:ENST00000586103.5:ENST00000585912.5:ENST00000585550.5:ENST00000591330.5:ENST00000590783.5:ENST00000589846.1:ENST00000588239.5:ENST00000585455.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	30	2	2.65834	3.58417	4.51	0.0187418	0.00809449	0.117523	0.0766625
chr7	5225224	5225322	3272323	0	+	0.55102	(0.515,0.57]	chr7	304133	22	INTRON	INTRON	WIPI2	ENSG00000157954.15	ENST00000401525.7:ENST00000288828.9:ENST00000404704.7:ENST00000466014.5:ENST00000382384.6:ENST00000484262.1:ENST00000480238.5:ENST00000488359.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	30	2	2.65834	3.58417	4.51	0.0187418	0.00809449	0.117523	0.0766625
chr15	90725042	90725141	6100988	0	+	0.444444	(0.44,0.476]	chr15	580852	5	INTRON	INTRON	BLM	ENSG00000197299.13	ENST00000355112.8:ENST00000648453.1:ENST00000681142.1:ENST00000560509.5:ENST00000559724.5:ENST00000680772.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	53	2	1.81595	3.58411	5.35227	0.0317953	8.47974e-4	0.14477	0.0267232
chr8	102401283	102401383	4012642	0	-	0.47	(0.44,0.476]	chr8	367237	393	INTRON	INTRON	UBR5	ENSG00000104517.13	ENST00000520539.6:ENST00000220959.8:ENST00000521922.5	protein_coding	protein_coding	protein_coding	protein_coding	3	53	2	1.81595	3.58411	5.35227	0.0317953	8.47974e-4	0.14477	0.0267232
chr1	149190335	149190435	216498	0	+	0.34	(0.32,0.35]	chr1	24074	3	SS3_PROX	SS3_PROX:INTRON	ENSG00000274265	ENSG00000274265.5	ENST00000668239.1:ENST00000662742.1:ENST00000667654.1:ENST00000611769.4:ENST00000612135.1:ENST00000664903.1	lncRNA	lncRNA	lncRNA	lncRNA	1	36	2	2.40308	3.584045	4.76501	0.0417732	0.0114287	0.161736	0.0886611
chr4	77797882	77797982	2166821	0	-	0.33	(0.32,0.35]	chr4	213719	211	INTRON	INTRON	CNOT6L	ENSG00000138767.14	ENST00000504123.7:ENST00000649644.1:ENST00000515506.6:ENST00000512485.6:ENST00000504804.7:ENST00000506166.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	36	2	2.40308	3.584045	4.76501	0.0417732	0.0114287	0.161736	0.0886611
chr5	65971230	65971330	2371294	0	+	0.35	(0.32,0.35]	chr5	228480	22	INTRON	INTRON	ERBIN	ENSG00000112851.15	ENST00000380943.6:ENST00000507490.1:ENST00000416865.6:ENST00000380935.5:ENST00000284037.10:ENST00000380938.6:ENST00000511297.5:ENST00000506030.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	36	2	2.40308	3.584045	4.76501	0.0417732	0.0114287	0.161736	0.0886611
chr15	63699196	63699296	6199524	0	-	0.42	(0.408,0.44]	chr15	591299	2	SS3_PROX	SS3_PROX:INTRON	HERC1	ENSG00000103657.14	ENST00000443617.7:ENST00000561400.1	protein_coding	protein_coding	protein_coding	protein_coding	2	44	2	2.27464	3.5839550000000004	4.89327	0.0158016	0.00458906	0.109464	0.0595107
chr7	6003249	6003309	3475791	0	-	0.416667	(0.408,0.44]	chr7	325133	2	SS5_PROX	SS5_PROX:INTRON	PMS2	ENSG00000122512.16	ENST00000265849.12:ENST00000441476.6:ENST00000642292.1:ENST00000642456.1:ENST00000643595.1:ENST00000382321.5:ENST00000644110.1:ENST00000406569.7:ENST00000469652.1:ENST00000380416.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	44	2	2.27464	3.5839550000000004	4.89327	0.0158016	0.00458906	0.109464	0.0595107
chr12	116194677	116194777	5424718	0	-	0.2	[0,0.28]	chr12	518271	135	INTRON	INTRON	MED13L	ENSG00000123066.9	ENST00000281928.9:ENST00000650226.1:ENST00000548743.2:ENST00000647567.1:ENST00000551197.2	protein_coding	protein_coding	protein_coding	protein_coding	2	55	2	2.05756	3.583945	5.11033	0.0352544	0.00991388	0.150301	0.0838372
chr16	15674351	15674450	6307128	0	+	0.494949	(0.476,0.515]	chr16	603432	12	INTRON	INTRON	NDE1	ENSG00000072864.16	ENST00000396355.5:ENST00000674888.1:ENST00000675171.1:ENST00000675951.1:ENST00000674900.1:ENST00000674588.1:ENST00000674538.1:ENST00000396354.6:ENST00000675926.1:ENST00000570727.5:ENST00000573203.5:ENST00000674995.1:ENST00000674554.1:ENST00000674581.1:ENST00000577101.6:ENST00000572756.6:ENST00000574163.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	44	2	2.13304	3.58385	5.03466	0.024866	0.00252065	0.132101	0.0446195
chr1	8595126	8595225	371552	0	-	0.414141	(0.408,0.44]	chr1	43521	44	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000400907.6:ENST00000656437.1:ENST00000659924.1:ENST00000480342.5:ENST00000514428.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	44	2	2.14732	3.5838	5.02028	0.0237354	0.00303216	0.129075	0.0493883
chr19	55235159	55235257	7213545	0	-	0.418367	(0.408,0.44]	chr19	732737	21	INTRON	INTRON	PPP6R1	ENSG00000105063.19	ENST00000412770.7:ENST00000587283.5	protein_coding	protein_coding	protein_coding	protein_coding	4	117	2	2.93869	3.5837950000000003	4.2289	2.73901e-4	3.9467e-5	0.0147448	0.00535965
chr4	150927027	150927126	2270886	0	-	0.494949	(0.476,0.515]	chr4	220911	54	INTRON	INTRON	LRBA	ENSG00000198589.14	ENST00000357115.9:ENST00000651943.2:ENST00000510413.5:ENST00000651035.1:ENST00000507224.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	47	2	1.92984	3.5837649999999996	5.23769	0.0466474	5.17244e-4	0.151522	0.0203753
chr18	57572003	57572103	6980325	0	-	0.32	(0.28,0.32]	chr18	690620	4	SS3_PROX	SS3_PROX:INTRON	FECH	ENSG00000066926.13	ENST00000262093.11:ENST00000652755.1:ENST00000651787.1:ENST00000382873.8:ENST00000585494.5:ENST00000682485.1:ENST00000592699.6:ENST00000585699.1:ENST00000585747.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	56	2	1.91611	3.58376	5.25141	0.0539102	0.00125199	0.164153	0.0328543
chr1	19091926	19092024	385513	0	-	0.357143	(0.35,0.378]	chr1	45644	26	INTRON	INTRON	UBR4	ENSG00000127481.15	ENST00000375254.8:ENST00000375224.1	protein_coding	protein_coding	protein_coding	protein_coding	4	126	2	3.07741	3.5836949999999996	4.08998	1.44425e-4	1.0444e-4	0.010445	0.00919241
chr9	137634112	137634212	4223623	0	+	0.3	(0.28,0.32]	chr9	388152	137	INTRON	INTRON	EHMT1	ENSG00000181090.21	ENST00000462484.5:ENST00000371394.6:ENST00000630754.2:ENST00000460843.6:ENST00000626216.2:ENST00000637593.1:ENST00000629335.2:ENST00000637335.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	122	2	3.22222	3.58366	3.9451	4.01934e-4	3.16631e-4	0.0180102	0.0164236
chr15	30643368	30643464	5992448	0	+	0.520833	(0.515,0.57]	chr15	569739	14	INTRON	INTRON	ENSG00000284906:ARHGAP11B	ENSG00000284906.3:ENSG00000285077.3	ENST00000564902.5:ENST00000428041.4:ENST00000693711.1:ENST00000685924.1:ENST00000563110.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	84	2	3.06239	3.5836500000000004	4.10491	6.62949e-4	3.09275e-5	0.0234815	0.00443703
chr1	17413357	17413436	384716	0	-	0.481013	(0.476,0.515]	chr1	45454	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RCC2	ENSG00000179051.14	ENST00000375436.9:ENST00000375433.3	protein_coding	protein_coding	protein_coding	protein_coding	4	65	2	1.67283	3.5835850000000002	5.49434	0.0332283	1.62782e-4	0.134145	0.0109774
chr1	1221748	1221848	358873	0	-	0.51	(0.476,0.515]	chr1	41400	5	INTRON	INTRON	SDF4	ENSG00000078808.19	ENST00000660930.1:ENST00000465727.5:ENST00000263741.12:ENST00000360001.12:ENST00000403997.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	130	2	3.2496	3.583485	3.91737	3.39435e-4	4.6503e-6	0.0170719	0.00144728
chr19	5069711	5069810	7004431	0	+	0.464646	(0.44,0.476]	chr19	694835	217	INTRON	INTRON	KDM4B	ENSG00000127663.15	ENST00000159111.9:ENST00000611640.4:ENST00000381759.8:ENST00000536461.5:ENST00000592175.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	61	2	1.96805	3.583425	5.1988	0.0109533	0.00151532	0.0925675	0.0352794
chr1	8554478	8554578	371142	0	-	0.46	(0.44,0.476]	chr1	43505	128	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000400907.6:ENST00000656437.1:ENST00000659924.1:ENST00000480342.5:ENST00000469251.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	57	2	1.7651	3.58331	5.40152	0.039388	2.39829e-4	0.143072	0.0136403
chr7	140473332	140473432	3661571	0	-	0.43	(0.408,0.44]	chr7	339932	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MKRN1	ENSG00000133606.11	ENST00000255977.7:ENST00000475010.5:ENST00000495305.5:ENST00000474576.5:ENST00000480552.5:ENST00000496169.5:ENST00000443720.6:ENST00000471104.5:ENST00000467513.5:ENST00000494939.1:ENST00000498535.1:ENST00000473444.1:ENST00000475180.5:ENST00000481705.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	48	2	1.81572	3.5832949999999997	5.35087	0.0626779	3.00323e-4	0.175915	0.0155054
chr16	15959285	15959385	6307855	0	+	0.44	(0.408,0.44]	chr16	603510	91	INTRON	INTRON	ABCC1	ENSG00000103222.20	ENST00000574224.2:ENST00000678422.1:ENST00000677164.1:ENST00000399408.7:ENST00000572882.3:ENST00000399410.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	47	2	2.73941	3.5832699999999997	4.42713	0.0173083	0.002744	0.104099	0.0484022
chr2	27595872	27595971	718062	0	+	0.363636	(0.35,0.378]	chr2	83352	118	INTRON	INTRON	ZNF512	ENSG00000243943.10	ENST00000413371.6:ENST00000416005.6:ENST00000556601.5:ENST00000379717.5:ENST00000355467.6:ENST00000494548.1:ENST00000461705.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	47	2	2.44701	3.5832699999999997	4.71953	0.0103314	0.00900997	0.0851009	0.0850389
chr10	3121136	3121235	4382084	0	+	0.434343	(0.408,0.44]	chr10	404146	7	INTRON	INTRON	PFKP	ENSG00000067057.18	ENST00000381125.9:ENST00000381075.7:ENST00000678206.1:ENST00000678089.1:ENST00000676796.1:ENST00000415005.6:ENST00000413079.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	77	2	2.95296	3.58317	4.21338	0.00929354	2.19708e-5	0.0817766	0.00364987
chr8	123345685	123345785	4042108	0	-	0.29	(0.28,0.32]	chr8	368693	2	SS5_PROX	SS5_PROX:INTRON	ATAD2	ENSG00000156802.13	ENST00000287394.10:ENST00000517666.5:ENST00000521903.5:ENST00000519124.5:ENST00000521496.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	44	2	2.82769	3.5831600000000003	4.33863	0.0207276	0.0169391	0.122348	0.103888
chr15	52022160	52022257	6029049	0	+	0.329897	(0.32,0.35]	chr15	574417	2	INTRON	INTRON	MAPK6	ENSG00000069956.14	ENST00000560802.1:ENST00000691380.1:ENST00000558063.5:ENST00000560254.1:ENST00000681888.1:ENST00000261845.7:ENST00000680066.1:ENST00000680777.1:ENST00000558100.1:ENST00000680652.1:ENST00000558841.1:ENST00000558891.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	59	2	1.61669	3.583065	5.54944	0.0578816	9.42646e-4	0.188651	0.0280811
chr5	138349135	138349234	2494844	0	+	0.373737	(0.35,0.378]	chr5	238465	23	UTR3	UTR3:EXON_MRNA	FAM53C	ENSG00000120709.11	ENST00000239906.10	protein_coding	protein_coding	protein_coding	protein_coding	3	107	2	3.05367	3.583055	4.11244	7.17897e-4	9.3522e-5	0.0244389	0.00859551
chr2	239969400	239969491	1345151	0	-	0.582418	(0.57,1]	chr2	141027	3	UTR3	UTR3:EXON_MRNA:INTRON	NDUFA10	ENSG00000130414.13	ENST00000419408.5:ENST00000679183.1:ENST00000677057.1:ENST00000676782.1:ENST00000677407.1:ENST00000676929.1:ENST00000678455.1:ENST00000252711.7:ENST00000677692.1:ENST00000476216.6:ENST00000677395.1:ENST00000678188.1:ENST00000677979.1:ENST00000678914.1:ENST00000678562.1:ENST00000678832.1:ENST00000677155.1:ENST00000677764.1:ENST00000677294.1:ENST00000678468.1:ENST00000677324.1:ENST00000678158.1:ENST00000676491.1:ENST00000471378.1:ENST00000677114.1:ENST00000404554.5:ENST00000620965.5:ENST00000485344.6:ENST00000679308.1:ENST00000677567.1:ENST00000679158.1:ENST00000443626.5:ENST00000444548.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	23	2	2.99729	3.58305	4.16881	0.00574776	0.00538023	0.0681402	0.0642754
chr1	31318736	31318826	61381	0	+	0.333333	(0.32,0.35]	chr1	7835	1	SS3_PROX	SS3_PROX:INTRON	ZCCHC17	ENSG00000121766.16	ENST00000618216.4:ENST00000546109.5:ENST00000616393.4:ENST00000616859.4:ENST00000615916.4:ENST00000479629.5:ENST00000373714.5:ENST00000344147.10:ENST00000627541.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	39	2	2.23182	3.5830349999999997	4.93425	0.068598	0.00281048	0.184298	0.0488779
chr2	45447432	45447527	1111709	0	-	0.336842	(0.32,0.35]	chr2	119280	4	EXON_LNCRNA	EXON_LNCRNA:INTRON	SRBD1	ENSG00000068784.13	ENST00000263736.5:ENST00000490133.5:ENST00000475073.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	39	2	2.23182	3.5830349999999997	4.93425	0.068598	0.00281048	0.184298	0.0488779
chr4	67521588	67521687	2153274	0	-	0.333333	(0.32,0.35]	chr4	211991	17	INTRON	INTRON	CENPC	ENSG00000145241.11	ENST00000273853.11:ENST00000513216.5:ENST00000506882.5:ENST00000510189.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	39	2	2.23182	3.5830349999999997	4.93425	0.068598	0.00281048	0.184298	0.0488779
chr6	99399195	99399293	3165867	0	-	0.336735	(0.32,0.35]	chr6	295275	17	UTR3	UTR3:EXON_MRNA	PNISR	ENSG00000132424.17	ENST00000681615.1:ENST00000369239.10:ENST00000647811.1:ENST00000481229.2:ENST00000679525.1:ENST00000681611.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	39	2	2.23182	3.5830349999999997	4.93425	0.068598	0.00281048	0.184298	0.0488779
chr7	27636725	27636825	3510680	0	-	0.33	(0.32,0.35]	chr7	327343	39	INTRON	INTRON	HIBADH	ENSG00000106049.9	ENST00000265395.7:ENST00000428288.2:ENST00000425715.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	39	2	2.23182	3.5830349999999997	4.93425	0.068598	0.00281048	0.184298	0.0488779
chr7	121198726	121198826	3395756	0	+	0.35	(0.32,0.35]	chr7	317781	487	INTRON	INTRON	CPED1	ENSG00000106034.18	ENST00000310396.10:ENST00000450913.6:ENST00000423795.5:ENST00000466055.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	39	2	2.23182	3.5830349999999997	4.93425	0.068598	0.00281048	0.184298	0.0488779
chr8	67151322	67151421	3777533	0	+	0.323232	(0.32,0.35]	chr8	350394	10	INTRON	INTRON	CSPP1	ENSG00000104218.16	ENST00000676113.1:ENST00000675306.2:ENST00000678156.1:ENST00000262210.11:ENST00000678017.1:ENST00000675869.1:ENST00000678542.1:ENST00000677619.1:ENST00000676605.1:ENST00000676471.1:ENST00000677256.1:ENST00000676847.1:ENST00000677009.1:ENST00000676317.1:ENST00000677592.1:ENST00000676573.1:ENST00000678318.1:ENST00000677473.1:ENST00000674993.1:ENST00000679226.1:ENST00000676882.1:ENST00000675955.1:ENST00000677430.1:ENST00000677455.1:ENST00000678616.1:ENST00000678362.1:ENST00000679112.1:ENST00000678645.1:ENST00000676567.1:ENST00000677845.1:ENST00000519163.6:ENST00000676858.1:ENST00000678747.1:ENST00000519668.1:ENST00000676697.1:ENST00000677855.1:ENST00000676695.1:ENST00000676534.1:ENST00000678138.1:ENST00000678807.1:ENST00000677052.1:ENST00000679274.1:ENST00000679042.1:ENST00000678635.1:ENST00000676804.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	39	2	2.23182	3.5830349999999997	4.93425	0.068598	0.00281048	0.184298	0.0488779
chr17	43106055	43106155	6775670	0	-	0.43	(0.408,0.44]	chr17	667812	2	SS5_PROX	SS5_PROX:INTRON	BRCA1	ENSG00000012048.23	ENST00000471181.7:ENST00000352993.7:ENST00000357654.9:ENST00000468300.5:ENST00000586385.5:ENST00000591534.5:ENST00000591849.5:ENST00000493795.5:ENST00000491747.6:ENST00000461221.5:ENST00000478531.5:ENST00000493919.5:ENST00000354071.7:ENST00000634433.1:ENST00000470026.5:ENST00000652672.1:ENST00000477152.5:ENST00000494123.5:ENST00000492859.5:ENST00000497488.1:ENST00000642945.1:ENST00000476777.5:ENST00000461798.5:ENST00000489037.1:ENST00000644555.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	48	2	2.16746	3.5829150000000003	4.99837	0.024436	0.00131369	0.12011	0.0333932
chr1	166865797	166865895	576680	0	-	0.295918	(0.28,0.32]	chr1	69920	15	INTRON	INTRON	TADA1	ENSG00000152382.6	ENST00000367874.5	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	2.73945	3.5828750000000005	4.4263	0.0330296	0.017681	0.133816	0.11319
chr12	45248367	45248467	5120337	0	+	0.3	(0.28,0.32]	chr12	483127	197	INTRON	INTRON	ANO6	ENSG00000177119.17	ENST00000426898.2:ENST00000425752.6:ENST00000423947.7:ENST00000320560.13:ENST00000680498.1:ENST00000550630.5:ENST00000680201.1:ENST00000681156.1:ENST00000679761.1:ENST00000680371.1:ENST00000681817.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	38	2	2.73945	3.5828750000000005	4.4263	0.0330296	0.017681	0.133816	0.11319
chr12	71655251	71655350	5363506	0	-	0.292929	(0.28,0.32]	chr12	512031	71	INTRON	INTRON	ZFC3H1	ENSG00000133858.17	ENST00000378743.9:ENST00000552994.5:ENST00000550712.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	38	2	2.73945	3.5828750000000005	4.4263	0.0330296	0.017681	0.133816	0.11319
chr18	57617901	57617999	6980671	0	-	0.285714	(0.28,0.32]	chr18	690706	15	INTRON	INTRON	NARS1	ENSG00000134440.12	ENST00000256854.10:ENST00000586807.5:ENST00000411676.6:ENST00000540592.5:ENST00000591599.5:ENST00000587675.5:ENST00000588661.5:ENST00000587194.1:ENST00000590123.1:ENST00000587366.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	38	2	2.73945	3.5828750000000005	4.4263	0.0330296	0.017681	0.133816	0.11319
chr19	40044287	40044387	7182807	0	-	0.3	(0.28,0.32]	chr19	726353	73	INTRON	INTRON	ZNF780B	ENSG00000128000.17	ENST00000434248.6:ENST00000221355.10:ENST00000598845.5	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	2.73945	3.5828750000000005	4.4263	0.0330296	0.017681	0.133816	0.11319
chr22	41854040	41854140	7526207	0	+	0.32	(0.28,0.32]	chr22	769353	203	INTRON	INTRON	SREBF2	ENSG00000198911.12	ENST00000612482.4:ENST00000361204.9:ENST00000424354.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	38	2	2.73945	3.5828750000000005	4.4263	0.0330296	0.017681	0.133816	0.11319
chrX	77773760	77773860	7847346	0	-	0.32	(0.28,0.32]	chrX	800211	562	INTRON	INTRON	ATRX	ENSG00000085224.23	ENST00000373344.11:ENST00000395603.7:ENST00000480283.5:ENST00000624166.3:ENST00000624032.3:ENST00000623321.3:ENST00000624668.3:ENST00000622960.1:ENST00000624193.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	38	2	2.73945	3.5828750000000005	4.4263	0.0330296	0.017681	0.133816	0.11319
chr10	21555064	21555162	4404619	0	+	0.540816	(0.515,0.57]	chr10	406433	28	INTRON	INTRON	MLLT10	ENSG00000078403.17	ENST00000651097.1:ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000377100.8:ENST00000377091.7:ENST00000650772.1:ENST00000651298.1:ENST00000652497.1:ENST00000495130.5:ENST00000377059.7:ENST00000621220.4:ENST00000476557.5:ENST00000462999.5:ENST00000430455.2:ENST00000479634.1:ENST00000480415.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	40	2	2.1885	3.58286	4.97722	0.0202537	0.00168681	0.121364	0.0370386
chr7	148742029	148742128	3444124	0	+	0.323232	(0.32,0.35]	chr7	321190	7	INTRON	INTRON	CUL1	ENSG00000055130.18	ENST00000409469.5:ENST00000662716.1:ENST00000665936.1:ENST00000663044.1:ENST00000602748.5:ENST00000663835.1:ENST00000655324.1:ENST00000662132.1:ENST00000325222.9:ENST00000656001.1:ENST00000666124.1:ENST00000671421.1:ENST00000671397.1:ENST00000662670.1:ENST00000660240.1:ENST00000662975.1:ENST00000660013.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	39	2	2.4458	3.58275	4.7197	0.0425977	0.00568521	0.148082	0.0678837
chr11	5356203	5356303	4896781	0	-	0.34	(0.32,0.35]	chr11	459187	89	INTRON	INTRON	HBG2:ENSG00000239920:HBE1:OR51B5	ENSG00000196565.15:ENSG00000239920.2:ENSG00000213931.7:ENSG00000167355.8	ENST00000380252.6:ENST00000380259.7:ENST00000292896.3:ENST00000380237.5:ENST00000420726.6:ENST00000420465.6:ENST00000415970.6:ENST00000418729.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:nonsense_mediated_decay:processed_transcript	3	58	2	1.83315	3.582665	5.33218	0.0313348	0.00204346	0.144381	0.04086
chr6	4884992	4885092	2791949	0	+	0.49	(0.476,0.515]	chr6	263602	483	INTRON	INTRON	CDYL	ENSG00000153046.18	ENST00000328908.9:ENST00000491864.1:ENST00000440139.5:ENST00000483019.1:ENST00000397588.8:ENST00000472453.5:ENST00000449732.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	96	2	3.29998	3.5825	3.86502	2.2858e-4	1.88247e-4	0.0138641	0.011951
chr4	102794773	102794871	2213017	0	-	0.346939	(0.32,0.35]	chr4	216719	5	UTR3	UTR3:EXON_MRNA	UBE2D3	ENSG00000109332.20	ENST00000453744.7:ENST00000394804.6:ENST00000618836.4	protein_coding	protein_coding	protein_coding	protein_coding	3	112	2	3.28616	3.5824800000000003	3.8788	3.3703e-4	2.51931e-4	0.0170609	0.0141209
chr1	203801739	203801837	296741	0	+	0.265306	[0,0.28]	chr1	34131	14	UTR3	UTR3:UTR5:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	ZC3H11A:ZBED6	ENSG00000058673.17:ENSG00000257315.3	ENST00000367210.3:ENST00000453771.5:ENST00000432282.5:ENST00000466470.5:ENST00000638800.1:ENST00000461980.1:ENST00000367214.5:ENST00000639812.1:ENST00000367212.7:ENST00000332127.8:ENST00000550078.2:ENST00000495527.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	10	411	2	3.34032	3.582475	3.82463	1.68162e-5	3.34116e-6	0.00330136	0.00119065
chr17	81626744	81626843	6849506	0	-	0.393939	(0.378,0.408]	chr17	678237	41	INTRON	INTRON	NPLOC4	ENSG00000182446.14	ENST00000331134.11:ENST00000374747.9:ENST00000574897.5:ENST00000625705.1:ENST00000570300.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	45	2	2.35527	3.582475	4.80968	0.0121511	0.00679828	0.0963966	0.0711802
chr2	31957074	31957174	1090581	0	-	0.4	(0.378,0.408]	chr2	116908	133	INTRON	INTRON	MEMO1:DPY30	ENSG00000162959.14:ENSG00000162961.14	ENST00000295065.9:ENST00000446765.5:ENST00000404530.6:ENST00000379383.7:ENST00000490459.5:ENST00000426310.6:ENST00000413686.1:ENST00000407893.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	45	2	2.35527	3.582475	4.80968	0.0121511	0.00679828	0.0963966	0.0711802
chr7	73488395	73488494	3554756	0	-	0.393939	(0.378,0.408]	chr7	330783	95	INTRON	INTRON	BAZ1B	ENSG00000009954.11	ENST00000339594.9:ENST00000404251.1	protein_coding	protein_coding	protein_coding	protein_coding	2	45	2	2.35527	3.582475	4.80968	0.0121511	0.00679828	0.0963966	0.0711802
chr5	88196210	88196310	2668998	0	-	0.46	(0.44,0.476]	chr5	252621	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	TMEM161B	ENSG00000164180.14	ENST00000514135.5:ENST00000296595.11:ENST00000511087.5:ENST00000510089.5:ENST00000506536.5:ENST00000511218.5:ENST00000512429.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	184	2	2.47573	3.58247	4.68921	1.41327e-4	2.6645e-6	0.0102551	0.00115411
chr19	4414634	4414734	7001883	0	+	0.46	(0.44,0.476]	chr19	694523	45	INTRON	INTRON	CHAF1A	ENSG00000167670.16	ENST00000301280.10:ENST00000587739.1	protein_coding	protein_coding	protein_coding	protein_coding	2	44	2	2.33272	3.58237	4.83202	0.0129984	0.00525002	0.0991656	0.0633615
chr22	47820776	47820876	7541266	0	+	0.47	(0.44,0.476]	chr22	770766	216	INTRON	INTRON	ENSG00000224271	ENSG00000224271.7	ENST00000664761.1:ENST00000650683.1:ENST00000651536.1:ENST00000652656.1:ENST00000651445.1:ENST00000423737.5:ENST00000650660.1:ENST00000651056.1:ENST00000652611.1:ENST00000652399.1:ENST00000652123.1:ENST00000652505.1:ENST00000652030.2:ENST00000651403.1:ENST00000652228.1:ENST00000651124.1:ENST00000650972.1:ENST00000651637.1:ENST00000651003.1:ENST00000651948.2:ENST00000651293.1:ENST00000651939.1:ENST00000650787.1:ENST00000651517.1:ENST00000651662.1:ENST00000651638.1:ENST00000670853.1:ENST00000652080.1:ENST00000651294.1:ENST00000652164.1:ENST00000651538.1:ENST00000651033.1:ENST00000651584.1	lncRNA	lncRNA	lncRNA	lncRNA	2	44	2	2.33272	3.58237	4.83202	0.0129984	0.00525002	0.0991656	0.0633615
chr5	131651201	131651301	2719271	0	-	0.45	(0.44,0.476]	chr5	255641	36	INTRON	INTRON	FNIP1	ENSG00000217128.13	ENST00000510461.6:ENST00000307954.12:ENST00000307968.11	protein_coding	protein_coding	protein_coding	protein_coding	2	44	2	2.33272	3.58237	4.83202	0.0129984	0.00525002	0.0991656	0.0633615
chr1	40197948	40198047	80333	0	+	0.343434	(0.32,0.35]	chr1	10425	18	INTRON	INTRON	RLF	ENSG00000117000.9	ENST00000372771.5	protein_coding	protein_coding	protein_coding	protein_coding	2	84	2	3.27858	3.58234	3.8861	0.00368368	1.80108e-4	0.0535094	0.0116696
chr1	230941153	230941251	654827	0	-	0.316327	(0.28,0.32]	chr1	77676	2	INTRON	INTRON	TTC13	ENSG00000143643.13	ENST00000366661.9:ENST00000366662.8:ENST00000481976.6:ENST00000522821.5:ENST00000522399.1:ENST00000466507.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	38	2	2.29724	3.582275	4.86731	0.0554156	0.0116253	0.18407	0.0889104
chr10	48319826	48319926	4431120	0	+	0.32	(0.28,0.32]	chr10	408563	112	INTRON	INTRON	MAPK8	ENSG00000107643.17	ENST00000395611.7:ENST00000432379.5:ENST00000374189.6:ENST00000429041.6:ENST00000374179.8:ENST00000426557.5:ENST00000476134.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	38	2	2.29724	3.582275	4.86731	0.0554156	0.0116253	0.18407	0.0889104
chr11	11843123	11843223	4735566	0	+	0.3	(0.28,0.32]	chr11	438597	5	INTRON	INTRON	USP47	ENSG00000170242.19	ENST00000339865.9:ENST00000525257.1:ENST00000527733.7:ENST00000399455.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	38	2	2.29724	3.582275	4.86731	0.0554156	0.0116253	0.18407	0.0889104
chr2	197979059	197979159	970847	0	+	0.32	(0.28,0.32]	chr2	104858	1684	INTRON	INTRON	PLCL1	ENSG00000115896.16	ENST00000428675.6:ENST00000435320.1:ENST00000487695.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	38	2	2.29724	3.582275	4.86731	0.0554156	0.0116253	0.18407	0.0889104
chr3	44434398	44434498	1676286	0	-	0.32	(0.28,0.32]	chr3	171106	28	UTR3	UTR3:EXON_MRNA:INTRON	C3orf86:ZNF445	ENSG00000225873.4:ENSG00000185219.18	ENST00000636468.1:ENST00000637612.1:ENST00000396077.8	protein_coding	protein_coding	protein_coding:transcribed_unitary_pseudogene	protein_coding:processed_transcript	1	38	2	2.29724	3.582275	4.86731	0.0554156	0.0116253	0.18407	0.0889104
chr7	32622364	32622463	3513975	0	-	0.292929	(0.28,0.32]	chr7	327675	9	INTRON	INTRON	DPY19L1P1	ENSG00000229358.3	ENST00000417811.2	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	1	38	2	2.29724	3.582275	4.86731	0.0554156	0.0116253	0.18407	0.0889104
chr1	29048829	29048928	60312	0	+	0.242424	[0,0.28]	chr1	7705	75	INTRON	INTRON	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000647918.1:ENST00000646800.1:ENST00000644342.1:ENST00000646189.1:ENST00000482464.6:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000646260.1:ENST00000373798.5:ENST00000644600.1:ENST00000649674.1:ENST00000643173.1:ENST00000343067.9:ENST00000644780.1:ENST00000650265.1:ENST00000648181.1:ENST00000643604.1:ENST00000648891.1:ENST00000373797.2:ENST00000349460.9:ENST00000645184.1:ENST00000645111.1:ENST00000643302.1:ENST00000645999.1:ENST00000642643.1:ENST00000636666.1:ENST00000644848.1:ENST00000644470.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	100	2	1.8602	3.58222	5.30424	0.0100208	0.00584781	0.0880342	0.0667594
chr12	79922204	79922303	5376406	0	-	0.414141	(0.408,0.44]	chr12	512797	84	INTRON	INTRON	PPP1R12A	ENSG00000058272.19	ENST00000261207.9:ENST00000450142.7:ENST00000437004.6:ENST00000550107.5:ENST00000547330.5:ENST00000550510.5	protein_coding	protein_coding	protein_coding	protein_coding	3	98	2	2.95088	3.5821300000000003	4.21338	0.00142252	2.19708e-5	0.0340865	0.00364987
chr1	54316279	54316379	462856	0	-	0.58	(0.57,1]	chr1	55768	344	INTRON	INTRON	SSBP3	ENSG00000157216.16	ENST00000610401.5:ENST00000357475.9:ENST00000371319.8:ENST00000417664.7:ENST00000533946.6:ENST00000326956.12:ENST00000371320.8:ENST00000426150.5:ENST00000533209.5:ENST00000525990.1:ENST00000528787.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	23	2	2.36411	3.58211	4.80011	0.0408868	6.07135e-4	0.161534	0.0226059
chr2	138501413	138501508	1235561	0	-	0.578947	(0.57,1]	chr2	131486	2	EXON_LNCRNA	EXON_LNCRNA	SPOPL-DT	ENSG00000228043.5	ENST00000431985.5:ENST00000414911.1	lncRNA	lncRNA	lncRNA	lncRNA	1	23	2	2.36411	3.58211	4.80011	0.0408868	6.07135e-4	0.161534	0.0226059
chr2	239984716	239984816	1345309	0	-	0.65	(0.57,1]	chr2	141052	6	INTRON	INTRON	NDUFA10	ENSG00000130414.13	ENST00000419408.5:ENST00000679183.1:ENST00000677057.1:ENST00000676782.1:ENST00000677407.1:ENST00000676929.1:ENST00000678455.1:ENST00000252711.7:ENST00000677692.1:ENST00000476216.6:ENST00000677395.1:ENST00000678188.1:ENST00000677979.1:ENST00000678914.1:ENST00000678562.1:ENST00000678832.1:ENST00000677155.1:ENST00000677764.1:ENST00000677294.1:ENST00000678468.1:ENST00000677324.1:ENST00000678158.1:ENST00000676491.1:ENST00000677114.1:ENST00000404554.5:ENST00000620965.5:ENST00000485344.6:ENST00000679308.1:ENST00000677567.1:ENST00000679158.1:ENST00000443626.5:ENST00000444548.6:ENST00000448880.6:ENST00000677490.1:ENST00000307300.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	23	2	2.36411	3.58211	4.80011	0.0408868	6.07135e-4	0.161534	0.0226059
chr3	196048386	196048485	1897189	0	-	0.575758	(0.57,1]	chr3	189884	208	INTRON	INTRON	TFRC	ENSG00000072274.13	ENST00000426789.5	protein_coding	protein_coding	protein_coding	protein_coding	1	23	2	2.36411	3.58211	4.80011	0.0408868	6.07135e-4	0.161534	0.0226059
chr16	68095199	68095299	6370322	0	+	0.45	(0.44,0.476]	chr16	612188	56	INTRON	INTRON	ENSG00000261864:NFATC3	ENSG00000261864.1:ENSG00000072736.19	ENST00000548144.1:ENST00000563319.5:ENST00000569766.5:ENST00000553077.5:ENST00000566301.5:ENST00000549350.5:ENST00000566893.5:ENST00000575270.5:ENST00000561714.5:ENST00000346183.8:ENST00000568466.6:ENST00000539828.6:ENST00000562171.1:ENST00000349223.9:ENST00000329524.8:ENST00000379165.8:ENST00000562926.5:ENST00000570212.5:ENST00000563796.5:ENST00000567152.5:ENST00000563288.5:ENST00000535127.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA:processed_transcript	2	44	2	2.0776	3.582095	5.08659	0.0292951	0.00226401	0.141862	0.0425438
chr11	67607298	67607324	4815472	0	+	0.615385	(0.57,1]	chr11	448556	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NDUFV1	ENSG00000167792.13	ENST00000647561.1:ENST00000532303.5:ENST00000532244.5:ENST00000528328.1:ENST00000322776.11:ENST00000529927.5:ENST00000415352.6:ENST00000532343.5:ENST00000524838.5:ENST00000524876.5:ENST00000528548.5:ENST00000529867.5:ENST00000533075.5:ENST00000534139.5:ENST00000525086.5:ENST00000530014.5:ENST00000530103.5:ENST00000532260.1:ENST00000530638.1:ENST00000526138.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	35	2	1.89351	3.58209	5.27067	0.0255126	5.68536e-5	0.133676	0.00655354
chr1	155691342	155691442	229535	0	+	0.32	(0.28,0.32]	chr1	26994	17	INTRON	INTRON	DAP3	ENSG00000132676.16	ENST00000471642.6:ENST00000471214.5:ENST00000343043.7:ENST00000368336.10:ENST00000535183.5:ENST00000421487.6:ENST00000496863.5:ENST00000465375.5:ENST00000462002.5:ENST00000470830.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	43	2	2.73077	3.582085	4.4334	0.0220748	0.0163355	0.115395	0.109464
chr1	246580844	246580944	350127	0	+	0.52	(0.515,0.57]	chr1	40488	137	INTRON	INTRON	CNST	ENSG00000162852.14	ENST00000483271.1:ENST00000366513.9:ENST00000366512.7:ENST00000366511.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	32	2	2.23915	3.5819400000000003	4.92473	0.0596178	0.00108255	0.16883600000000001	0.0300133
chrX	110249715	110249815	7862268	0	-	0.53	(0.515,0.57]	chrX	801505	248	INTRON	INTRON	AMMECR1	ENSG00000101935.12	ENST00000686065.1:ENST00000262844.10:ENST00000372059.6:ENST00000372057.1:ENST00000680410.1:ENST00000473662.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	32	2	2.23915	3.5819400000000003	4.92473	0.0596178	0.00108255	0.16883600000000001	0.0300133
chr7	127722099	127722199	3403111	0	+	0.34	(0.32,0.35]	chr7	318134	3	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000468166.5:ENST00000465900.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	87	2	1.35626	3.5818	5.80734	0.0414162	3.45606e-4	0.161578	0.0173197
chr1	226185889	226185989	647050	0	-	0.43	(0.408,0.44]	chr1	76668	1	SS5_PROX	SS5_PROX:INTRON	ACBD3	ENSG00000182827.9	ENST00000366812.6	protein_coding	protein_coding	protein_coding	protein_coding	3	53	2	2.08376	3.581795	5.07983	0.0129886	0.00247652	0.0991656	0.0446195
chr6	87187943	87188043	2913582	0	+	0.4	(0.378,0.408]	chr6	275281	177	INTRON	INTRON	ZNF292	ENSG00000188994.13	ENST00000369577.8:ENST00000369578.6:ENST00000518845.1:ENST00000339907.8:ENST00000496806.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	49	2	1.8252	3.5817449999999997	5.33829	0.0619563	3.59275e-4	0.174514	0.0169207
chr3	9804612	9804712	1361046	0	+	0.42	(0.408,0.44]	chr3	143123	2	INTRON	INTRON	ARPC4:ARPC4-TTLL3	ENSG00000241553.13:ENSG00000250151.9	ENST00000498623.6:ENST00000424442.5:ENST00000418163.5:ENST00000397261.8:ENST00000417500.5:ENST00000440787.5:ENST00000397256.5:ENST00000433034.1:ENST00000453882.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	101	2	3.36795	3.581645	3.79534	2.17043e-4	2.02232e-4	0.0129814	0.0129235
chr2	171126955	171127055	1263760	0	-	0.51	(0.476,0.515]	chr2	133921	87	INTRON	INTRON	TLK1	ENSG00000198586.14	ENST00000431350.7:ENST00000360843.7:ENST00000359766.7:ENST00000521943.5:ENST00000409443.6:ENST00000413010.5:ENST00000470340.1:ENST00000466220.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	53	2	2.06898	3.5816049999999997	5.09423	0.0137491	0.00204588	0.10247	0.04086
chr16	20783791	20783891	6317791	0	+	0.5	(0.476,0.515]	chr16	604631	2	SS5_PROX	SS5_PROX:INTRON	ACSM3	ENSG00000005187.12	ENST00000289416.10:ENST00000440284.6:ENST00000562251.5:ENST00000563914.1:ENST00000567387.5:ENST00000561499.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	37	2	2.9435	3.58157	4.21964	0.0167715	0.00929849	0.110511	0.0817766
chr2	181895629	181895729	936983	0	+	0.33	(0.32,0.35]	chr2	102669	2	SS3_PROX	SS3_PROX:INTRON	ITPRID2	ENSG00000138434.17	ENST00000431877.7:ENST00000320370.11:ENST00000409001.5:ENST00000440623.5:ENST00000454579.5:ENST00000495248.5:ENST00000416081.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	50	2	2.54408	3.5814850000000003	4.61889	0.0166646	0.00659077	0.102621	0.0737338
chr10	5800097	5800197	4544785	0	-	0.36	(0.35,0.378]	chr10	419795	1	SS5_PROX	SS5_PROX:INTRON	GDI2	ENSG00000057608.17	ENST00000380191.9:ENST00000380181.7:ENST00000456041.5:ENST00000418688.5:ENST00000608581.5:ENST00000380127.5:ENST00000609712.1	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	2.86451	3.5814500000000002	4.29839	0.0294717	0.0109111	0.128055	0.0923273
chr12	11108326	11108426	5268878	0	-	0.36	(0.35,0.378]	chr12	502251	462	INTRON	INTRON	ENSG00000275778:PRH1	ENSG00000275778.2:ENSG00000231887.8	ENST00000536668.2:ENST00000535024.6:ENST00000541977.5:ENST00000546265.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	35	2	2.86451	3.5814500000000002	4.29839	0.0294717	0.0109111	0.128055	0.0923273
chr2	32383475	32383574	731044	0	+	0.363636	(0.35,0.378]	chr2	84286	28	INTRON	INTRON	BIRC6	ENSG00000115760.15	ENST00000421745.7:ENST00000648282.1	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	2.86451	3.5814500000000002	4.29839	0.0294717	0.0109111	0.128055	0.0923273
chr5	109801393	109801492	2450138	0	+	0.353535	(0.35,0.378]	chr5	234652	68	INTRON	INTRON	MAN2A1	ENSG00000112893.10	ENST00000261483.5:ENST00000502261.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	35	2	2.86451	3.5814500000000002	4.29839	0.0294717	0.0109111	0.128055	0.0923273
chr6	37993591	37993691	2858772	0	+	0.37	(0.35,0.378]	chr6	270231	632	INTRON	INTRON	ZFAND3	ENSG00000156639.12	ENST00000287218.9:ENST00000373391.6:ENST00000474522.5:ENST00000373389.5	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	2.86451	3.5814500000000002	4.29839	0.0294717	0.0109111	0.128055	0.0923273
chr1	27483289	27483389	406696	0	-	0.5	(0.476,0.515]	chr1	48986	540	INTRON	INTRON	WASF2	ENSG00000158195.11	ENST00000618852.5:ENST00000536657.1	protein_coding	protein_coding	protein_coding	protein_coding	3	53	2	1.80284	3.581395	5.35995	0.033161	7.54256e-4	0.145899	0.0251179
chr16	16140292	16140387	6309701	0	+	0.378947	(0.378,0.408]	chr16	603705	14	INTRON	INTRON	ABCC1	ENSG00000103222.20	ENST00000678422.1:ENST00000677164.1:ENST00000399408.7:ENST00000572882.3:ENST00000399410.8:ENST00000676806.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	76	2	3.5186	3.581395	3.64419	8.45009e-4	7.25777e-4	0.0263813	0.0247646
chr5	154798598	154798697	2527445	0	+	0.484848	(0.476,0.515]	chr5	241658	13	EXON_MRNA	EXON_MRNA:INTRON	LARP1	ENSG00000155506.19	ENST00000687700.1:ENST00000336314.9:ENST00000690816.1:ENST00000518297.6:ENST00000524248.5:ENST00000685946.1:ENST00000523163.5:ENST00000518595.1:ENST00000518742.1:ENST00000685355.1:ENST00000688232.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	53	2	1.80284	3.581395	5.35995	0.033161	7.54256e-4	0.145899	0.0251179
chr11	66622419	66622517	4810857	0	+	0.561224	(0.515,0.57]	chr11	447861	11	INTRON	INTRON	RBM14-RBM4:RBM14	ENSG00000248643.5:ENSG00000239306.5	ENST00000412278.2:ENST00000393979.3:ENST00000511114.1:ENST00000310137.5:ENST00000409372.1:ENST00000421355.1:ENST00000443702.1:ENST00000500635.2:ENST00000409738.4:ENST00000461478.1:ENST00000496694.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	30	2	2.74772	3.58135	4.41498	0.0142192	0.0106866	0.103638	0.0861859
chr15	50632083	50632178	6172728	0	-	0.515789	(0.515,0.57]	chr15	588348	2	INTRON	INTRON	TRPM7	ENSG00000092439.16	ENST00000646667.1:ENST00000560955.5	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	2.74772	3.58135	4.41498	0.0142192	0.0106866	0.103638	0.0861859
chr17	15510759	15510858	6731935	0	-	0.525253	(0.515,0.57]	chr17	660295	34	INTRON	INTRON	TVP23C-CDRT4:TVP23C	ENSG00000259024.6:ENSG00000175106.17	ENST00000522212.6:ENST00000557349.5:ENST00000481756.7:ENST00000518506.4:ENST00000225576.7:ENST00000581273.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	30	2	2.74772	3.58135	4.41498	0.0142192	0.0106866	0.103638	0.0861859
chr19	8482056	8482154	7011149	0	+	0.540816	(0.515,0.57]	chr19	696201	1	INTRON	INTRON	HNRNPM	ENSG00000099783.12	ENST00000348943.7:ENST00000600092.5:ENST00000325495.9:ENST00000600806.5:ENST00000620401.4:ENST00000594907.5:ENST00000597270.1:ENST00000597081.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	30	2	2.74772	3.58135	4.41498	0.0142192	0.0106866	0.103638	0.0861859
chr19	54104438	54104532	7098523	0	+	0.531915	(0.515,0.57]	chr19	711798	9	INTRON	INTRON	NDUFA3	ENSG00000170906.16	ENST00000417903.5:ENST00000419113.5:ENST00000391762.5:ENST00000485876.6:ENST00000451517.5:ENST00000471292.5:ENST00000391764.7:ENST00000391763.3:ENST00000484103.1:ENST00000303553.5:ENST00000422029.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	30	2	2.74772	3.58135	4.41498	0.0142192	0.0106866	0.103638	0.0861859
chr7	138505007	138505107	3435089	0	+	0.52	(0.515,0.57]	chr7	319965	2	INTRON	INTRON	TRIM24	ENSG00000122779.18	ENST00000343526.9:ENST00000415680.6:ENST00000497516.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	30	2	2.74772	3.58135	4.41498	0.0142192	0.0106866	0.103638	0.0861859
chr2	135472453	135472553	1232913	0	-	0.41	(0.408,0.44]	chr2	131237	813	INTRON	INTRON	ZRANB3	ENSG00000121988.18	ENST00000264159.11:ENST00000401392.5:ENST00000536680.5:ENST00000403017.2:ENST00000452187.6:ENST00000492193.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	73	2	3.52471	3.5812799999999996	3.63785	0.00112428	4.70012e-4	0.0306963	0.0196294
chr1	212866201	212866300	309919	0	+	0.545455	(0.515,0.57]	chr1	35794	13	INTRON	INTRON	FLVCR1	ENSG00000162769.13	ENST00000366971.9:ENST00000419102.1:ENST00000579295.1:ENST00000474693.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	32	2	2.76354	3.58127	4.399	0.0147344	0.00708863	0.0983813	0.0754923
chr10	113910426	113910526	4527413	0	+	0.52	(0.515,0.57]	chr10	417479	20	UTR3	UTR3:EXON_MRNA	NHLRC2	ENSG00000196865.4	ENST00000369301.3	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	2.76354	3.58127	4.399	0.0147344	0.00708863	0.0983813	0.0754923
chr16	85362847	85362947	6413458	0	+	0.52	(0.515,0.57]	chr16	615465	35	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	2.76354	3.58127	4.399	0.0147344	0.00708863	0.0983813	0.0754923
chr6	157012999	157013099	3009523	0	+	0.52	(0.515,0.57]	chr6	281130	275	INTRON	INTRON	ARID1B	ENSG00000049618.24	ENST00000346085.10:ENST00000636930.2:ENST00000647938.1:ENST00000350026.10:ENST00000674298.1:ENST00000674190.1:ENST00000414678.7:ENST00000319584.11:ENST00000452544.2:ENST00000637887.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	32	2	2.76354	3.58127	4.399	0.0147344	0.00708863	0.0983813	0.0754923
chrX	3890247	3890346	7747493	0	-	0.535354	(0.515,0.57]	chrX	793134	81	INTRON	INTRON	ENSG00000285756	ENSG00000285756.2	ENST00000648217.1:ENST00000650456.1:ENST00000650538.1	lncRNA	lncRNA	lncRNA	lncRNA	1	32	2	2.76354	3.58127	4.399	0.0147344	0.00708863	0.0983813	0.0754923
chrX	111719138	111719229	7702412	0	+	0.516484	(0.515,0.57]	chrX	788272	5	INTRON	INTRON	ALG13	ENSG00000101901.12	ENST00000394780.8:ENST00000251943.8:ENST00000610588.4:ENST00000621367.4:ENST00000624161.3:ENST00000636363.1:ENST00000495283.5:ENST00000623144.3:ENST00000470971.5:ENST00000623148.3:ENST00000436609.5:ENST00000623622.1:ENST00000490774.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	32	2	2.76354	3.58127	4.399	0.0147344	0.00708863	0.0983813	0.0754923
chr12	79907701	79907801	5376260	0	-	0.52	(0.515,0.57]	chr12	512793	344	INTRON	INTRON	PPP1R12A	ENSG00000058272.19	ENST00000261207.9:ENST00000450142.7:ENST00000437004.6:ENST00000546369.5:ENST00000550107.5:ENST00000547330.5:ENST00000550510.5	protein_coding	protein_coding	protein_coding	protein_coding	3	51	2	1.97035	3.581215	5.19208	0.0195832	3.4344e-4	0.109483	0.0164987
chr1	28205849	28205948	409085	0	-	0.535354	(0.515,0.57]	chr1	49251	1	INTRON	INTRON	DNAJC8	ENSG00000126698.11	ENST00000263697.6:ENST00000489277.5:ENST00000470967.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	30	2	2.56306	3.5811	4.59914	0.0247751	0.00616166	0.131869	0.0676501
chr1	38848956	38849054	427375	0	-	0.55102	(0.515,0.57]	chr1	51823	10	INTRON	INTRON	RRAGC	ENSG00000116954.8	ENST00000373001.4:ENST00000493015.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	30	2	2.56306	3.5811	4.59914	0.0247751	0.00616166	0.131869	0.0676501
chr12	101406810	101406910	5398086	0	-	0.53	(0.515,0.57]	chr12	514856	4	SS5_PROX	SS5_PROX:INTRON	ARL1	ENSG00000120805.14	ENST00000261636.13:ENST00000539055.5:ENST00000536227.5:ENST00000551688.1:ENST00000551828.5:ENST00000551671.5:ENST00000551092.5:ENST00000549283.1:ENST00000549302.1:ENST00000548070.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	30	2	2.56306	3.5811	4.59914	0.0247751	0.00616166	0.131869	0.0676501
chr2	206134401	206134500	1317656	0	-	0.535354	(0.515,0.57]	chr2	138113	9	INTRON	INTRON	NDUFS1	ENSG00000023228.14	ENST00000233190.11:ENST00000455934.6:ENST00000423725.5:ENST00000457011.5:ENST00000440274.5:ENST00000432169.5:ENST00000449699.5	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	2.56306	3.5811	4.59914	0.0247751	0.00616166	0.131869	0.0676501
chr22	21673212	21673312	7482523	0	+	0.57	(0.515,0.57]	chr22	763336	3	SS3_PROX	SS3_PROX:INTRON	PPIL2	ENSG00000100023.20	ENST00000679795.1:ENST00000679540.1:ENST00000679580.1:ENST00000681286.1:ENST00000680061.1:ENST00000681338.1:ENST00000681956.1:ENST00000679827.1:ENST00000679534.1:ENST00000679479.1:ENST00000680393.1:ENST00000680463.1:ENST00000680426.1:ENST00000335025.12:ENST00000498109.2:ENST00000496819.2:ENST00000398831.8:ENST00000681394.1:ENST00000679477.1:ENST00000626352.2:ENST00000417788.5:ENST00000458567.5:ENST00000681791.1:ENST00000679692.1:ENST00000680962.1:ENST00000679857.1:ENST00000679586.1:ENST00000680094.1:ENST00000484439.5:ENST00000680434.1:ENST00000680109.1:ENST00000406385.1:ENST00000680022.1:ENST00000681137.1:ENST00000680860.1:ENST00000680183.1:ENST00000485930.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	30	2	2.56306	3.5811	4.59914	0.0247751	0.00616166	0.131869	0.0676501
chr7	32485913	32486010	3513450	0	-	0.319588	(0.28,0.32]	chr7	327611	7	UTR3	UTR3:EXON_MRNA	LSM5	ENSG00000106355.10	ENST00000450169.7	protein_coding	protein_coding	protein_coding	protein_coding	2	56	2	1.96376	3.5810899999999997	5.19842	0.0480066	0.00152333	0.153019	0.0360297
chr1	45612005	45612102	93492	0	+	0.43299	(0.408,0.44]	chr1	12614	16	EXON_MRNA	EXON_MRNA:INTRON	NASP	ENSG00000132780.17	ENST00000437901.6:ENST00000537798.5:ENST00000437362.6:ENST00000350030.8:ENST00000527359.5:ENST00000453748.5:ENST00000525515.5:ENST00000528238.5:ENST00000372052.8:ENST00000351223.7:ENST00000530073.5:ENST00000481782.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	158	2	2.95007	3.58095	4.21183	3.86745e-4	5.89416e-7	0.0182867	4.17661e-4
chr19	53155700	53155799	7210897	0	-	0.373737	(0.35,0.378]	chr19	731933	15	INTRON	INTRON	ZNF347	ENSG00000197937.13	ENST00000601804.5:ENST00000334197.12:ENST00000452676.6:ENST00000601469.2:ENST00000597183.5:ENST00000595710.1:ENST00000599096.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	38	2	2.66547	3.580865	4.49626	0.0233639	0.00917582	0.118323	0.0855292
chr1	110406945	110407032	521991	0	-	0.287356	(0.28,0.32]	chr1	61333	7	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	LAMTOR5	ENSG00000134248.14	ENST00000464240.1:ENST00000474861.6:ENST00000483260.5:ENST00000256644.8:ENST00000602318.6:ENST00000531779.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	39	2	2.91832	3.5807599999999997	4.2432	0.0479043	0.0102484	0.153019	0.089002
chr1	100392323	100392423	173028	0	+	0.4	(0.378,0.408]	chr1	18824	11	INTRON	INTRON	CDC14A	ENSG00000079335.20	ENST00000646665.1:ENST00000644844.1:ENST00000635056.2:ENST00000647005.1:ENST00000647203.1:ENST00000644676.1:ENST00000361544.11:ENST00000370124.8:ENST00000336454.5:ENST00000644813.1:ENST00000455467.6:ENST00000646563.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	120	2	3.02949	3.580755	4.13202	1.73068e-4	7.35047e-5	0.0114086	0.00767614
chr10	79758222	79758322	4656996	0	-	0.53	(0.515,0.57]	chr10	429003	118	INTRON	INTRON	NUTM2B-AS1	ENSG00000225484.7	ENST00000671459.1:ENST00000596088.5:ENST00000600376.5:ENST00000601369.6:ENST00000662025.1:ENST00000670682.1:ENST00000619625.4:ENST00000658528.1:ENST00000477192.6	lncRNA	lncRNA	lncRNA	lncRNA	2	63	2	3.35609	3.580645	3.8052	0.00174131	1.67082e-4	0.0375363	0.0111796
chr3	42563652	42563686	1670594	0	-	0.529412	(0.515,0.57]	chr3	170732	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	SEC22C	ENSG00000093183.14	ENST00000264454.8:ENST00000423701.6:ENST00000273156.11:ENST00000417572.5:ENST00000449617.5:ENST00000456515.5:ENST00000493107.5:ENST00000383750.8:ENST00000450981.5:ENST00000445388.5:ENST00000454141.5:ENST00000416880.5:ENST00000487701.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	63	2	3.35609	3.580645	3.8052	0.00174131	1.67082e-4	0.0375363	0.0111796
chr6	109381403	109381503	3185906	0	-	0.34	(0.32,0.35]	chr6	296683	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	CD164	ENSG00000135535.17	ENST00000310786.10:ENST00000413644.6:ENST00000504373.2:ENST00000324953.9:ENST00000275080.11:ENST00000512821.5:ENST00000506649.5:ENST00000512212.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	93	2	1.32056	3.5806199999999997	5.84068	0.0398275	3.015e-4	0.161534	0.0160895
chr6	149575268	149575367	2995759	0	+	0.363636	(0.35,0.378]	chr6	280288	23	INTRON	INTRON	GINM1	ENSG00000055211.14	ENST00000650599.1:ENST00000367419.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	35	2	2.30249	3.5805949999999998	4.8587	0.0519726	0.00695662	0.176696	0.0718189
chrX	110009359	110009458	7700100	0	+	0.363636	(0.35,0.378]	chrX	788130	48	INTRON	INTRON	TMEM164	ENSG00000157600.12	ENST00000372072.7:ENST00000471255.5:ENST00000372073.5:ENST00000372068.7:ENST00000288381.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	35	2	2.30249	3.5805949999999998	4.8587	0.0519726	0.00695662	0.176696	0.0718189
chr6	4859900	4860000	2791698	0	+	0.52	(0.515,0.57]	chr6	263602	232	INTRON	INTRON	CDYL	ENSG00000153046.18	ENST00000328908.9:ENST00000491864.1:ENST00000440139.5:ENST00000483019.1:ENST00000397588.8:ENST00000472453.5:ENST00000449732.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	63	2	3.58035	3.580495	3.58064	6.54693e-4	5.21239e-4	0.0233335	0.0204523
chr10	133465660	133465756	4540635	0	+	0.552083	(0.515,0.57]	chr10	419137	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SCART1	ENSG00000214279.13	ENST00000482993.6:ENST00000463137.5:ENST00000640237.1:ENST00000488261.6:ENST00000462252.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	56	2	1.5060500000000001	3.580395	5.65474	0.0511812	9.00945e-5	0.176696	0.00844245
chr7	76587305	76587405	3340741	0	+	0.26	[0,0.28]	chr7	311170	354	INTRON	INTRON	ENSG00000205485	ENSG00000205485.13	ENST00000418663.5:ENST00000450661.1:ENST00000423084.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	2	61	2	1.812	3.580395	5.34879	0.0729149	0.00157139	0.189235	0.0365659
chr1	47341010	47341110	97646	0	+	0.34	(0.32,0.35]	chr1	13138	65	INTRON	INTRON	CMPK1	ENSG00000162368.14	ENST00000371873.10:ENST00000371871.8:ENST00000471289.2:ENST00000450808.2:ENST00000371870.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	58	2	1.97654	3.580345	5.18415	0.0199113	0.00333629	0.120668	0.0512081
chrX	154083503	154083603	7912956	0	-	0.35	(0.32,0.35]	chrX	805637	100	INTRON	INTRON	MECP2	ENSG00000169057.24	ENST00000303391.11:ENST00000453960.7:ENST00000628176.2:ENST00000407218.5:ENST00000369957.5:ENST00000631210.1:ENST00000496908.5:ENST00000415944.3:ENST00000630151.2:ENST00000676382.1:ENST00000611468.2:ENST00000637533.1:ENST00000675526.1:ENST00000637791.1:ENST00000675841.1:ENST00000674996.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	58	2	1.97654	3.580345	5.18415	0.0199113	0.00333629	0.120668	0.0512081
chr5	81560296	81560396	2664448	0	-	0.38	(0.378,0.408]	chr5	252412	462	INTRON	INTRON	SSBP2	ENSG00000145687.17	ENST00000320672.9:ENST00000615665.4:ENST00000509053.5:ENST00000514493.5:ENST00000505980.5:ENST00000515395.5:ENST00000509743.6:ENST00000507655.5:ENST00000507472.5:ENST00000509013.2:ENST00000504174.5:ENST00000512098.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	35	2	3.05393	3.5802699999999996	4.10661	0.0399023	0.00551532	0.143072	0.0672816
chr1	247209592	247209692	684095	0	-	0.45	(0.44,0.476]	chr1	80206	2	INTRON	INTRON	ZNF731P	ENSG00000227671.4	ENST00000606173.1:ENST00000606454.1:ENST00000606212.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	5	156	2	3.30979	3.580265	3.85074	5.50892e-5	7.00776e-6	0.0065165	0.00187943
chr1	41150915	41151014	429903	0	-	0.313131	(0.28,0.32]	chr1	52214	75	INTRON	INTRON	SCMH1	ENSG00000010803.17	ENST00000695335.1:ENST00000372596.5:ENST00000372597.5:ENST00000337495.9:ENST00000372595.5:ENST00000326197.11:ENST00000695336.1:ENST00000456518.3:ENST00000695337.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	41	2	2.2609	3.58026	4.89962	0.0671429	0.00425206	0.183051	0.0595557
chr11	73788392	73788492	4825170	0	+	0.29	(0.28,0.32]	chr11	450281	4	SS5_PROX	SS5_PROX:INTRON	MRPL48	ENSG00000175581.14	ENST00000508278.6:ENST00000310614.12:ENST00000540162.5:ENST00000544140.5:ENST00000544819.5:ENST00000497094.6:ENST00000411840.6:ENST00000398483.7:ENST00000535277.5:ENST00000542303.5:ENST00000537007.5:ENST00000543058.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	41	2	2.2609	3.58026	4.89962	0.0671429	0.00425206	0.183051	0.0595557
chr3	15818006	15818106	1624027	0	-	0.29	(0.28,0.32]	chr3	168034	33	INTRON	INTRON	ANKRD28	ENSG00000206560.12	ENST00000399451.6:ENST00000412318.5:ENST00000439830.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	41	2	2.2609	3.58026	4.89962	0.0671429	0.00425206	0.183051	0.0595557
chr5	88266329	88266429	2669718	0	-	0.29	(0.28,0.32]	chr5	252704	66	INTRON	INTRON	TMEM161B	ENSG00000164180.14	ENST00000514135.5:ENST00000296595.11:ENST00000511087.5:ENST00000510089.5:ENST00000506536.5:ENST00000512429.5:ENST00000507872.1:ENST00000509387.5:ENST00000503755.5:ENST00000513487.5:ENST00000515477.5:ENST00000503194.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	41	2	2.2609	3.58026	4.89962	0.0671429	0.00425206	0.183051	0.0595557
chr17	60626082	60626181	6644734	0	+	0.292929	(0.28,0.32]	chr17	648935	10	INTRON	INTRON	PPM1D	ENSG00000170836.13	ENST00000305921.8:ENST00000693102.1:ENST00000685212.1:ENST00000693196.1:ENST00000392995.7:ENST00000688505.1:ENST00000629650.3:ENST00000687355.1:ENST00000686064.1:ENST00000689445.1:ENST00000590418.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	41	2	2.32871	3.58018	4.83165	0.0581621	0.00527257	0.167723	0.0656295
chr15	43041618	43041718	6160033	0	-	0.31	(0.28,0.32]	chr15	586500	30	INTRON	INTRON	UBR1	ENSG00000159459.12	ENST00000290650.9:ENST00000546274.6	protein_coding	protein_coding	protein_coding	protein_coding	1	41	2	3.1268	3.580125	4.03345	0.0704058	0.00508956	0.184298	0.0646039
chr1	21773465	21773565	396773	0	-	0.31	(0.28,0.32]	chr1	47345	153	INTRON	INTRON	USP48	ENSG00000090686.16	ENST00000400301.5:ENST00000308271.14:ENST00000529637.5:ENST00000421625.6:ENST00000527823.5:ENST00000532737.1:ENST00000489108.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	106	2	1.38367	3.5800650000000003	5.77646	0.0292345	6.44045e-4	0.141787	0.0231685
chr1	31346818	31346918	61666	0	+	0.4	(0.378,0.408]	chr1	7857	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ZCCHC17	ENSG00000121766.16	ENST00000618216.4:ENST00000546109.5:ENST00000616393.4:ENST00000616859.4:ENST00000615916.4:ENST00000479629.5:ENST00000373714.5:ENST00000344147.10:ENST00000627541.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	36	2	2.38873	3.57989	4.77105	0.0458857	0.00330823	0.149888	0.0527031
chr3	60521209	60521309	1714826	0	-	0.38	(0.378,0.408]	chr3	176138	4405	INTRON	INTRON	FHIT	ENSG00000189283.10	ENST00000492590.6:ENST00000476844.5:ENST00000468189.5:ENST00000488467.5	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	2.38873	3.57989	4.77105	0.0458857	0.00330823	0.149888	0.0527031
chr6	17676766	17676866	3065911	0	-	0.48	(0.476,0.515]	chr6	284866	6	INTRON	INTRON	NUP153	ENSG00000124789.12	ENST00000613258.4:ENST00000537253.5:ENST00000262077.3	protein_coding	protein_coding	protein_coding	protein_coding	2	44	2	2.32001	3.579815	4.83962	0.0136217	0.00480934	0.101682	0.0602209
chr6	163521784	163521884	3032783	0	+	0.4	(0.378,0.408]	chr6	282586	425	INTRON	INTRON	QKI	ENSG00000112531.17	ENST00000361758.8:ENST00000453779.6:ENST00000275262.11:ENST00000392127.6:ENST00000361752.8:ENST00000361195.6:ENST00000424802.7:ENST00000545607.5:ENST00000544436.5:ENST00000537041.5:ENST00000545346.1:ENST00000544823.5:ENST00000537883.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	36	2	3.17089	3.57978	3.98867	0.0507	0.00357279	0.156383	0.0548435
chr20	49703879	49703979	7353528	0	-	0.3	(0.28,0.32]	chr20	749846	468	INTRON	INTRON	B4GALT5	ENSG00000158470.5	ENST00000371711.4	protein_coding	protein_coding	protein_coding	protein_coding	3	61	2	1.81152	3.579585	5.34765	0.034446	0.00287138	0.147767	0.0474836
chr12	57401901	57402001	5338967	0	-	0.48	(0.476,0.515]	chr12	510716	57	INTRON	INTRON	R3HDM2	ENSG00000179912.21	ENST00000402412.6:ENST00000347140.7:ENST00000634871.1:ENST00000448732.1	protein_coding	protein_coding	protein_coding	protein_coding	2	44	2	2.06491	3.5795699999999995	5.09423	0.0304733	0.00204588	0.143385	0.04086
chr12	70284108	70284207	5166841	0	+	0.484848	(0.476,0.515]	chr12	489381	55	INTRON	INTRON	CNOT2	ENSG00000111596.14	ENST00000547780.5:ENST00000418359.7:ENST00000552319.5:ENST00000550160.5:ENST00000551661.5:ENST00000551132.5:ENST00000553078.5:ENST00000548021.5:ENST00000550641.6:ENST00000229195.8:ENST00000552915.5:ENST00000549443.5:ENST00000548741.5:ENST00000552483.5:ENST00000552422.5:ENST00000547321.5:ENST00000553020.5:ENST00000548159.5:ENST00000549750.5:ENST00000551043.5:ENST00000548599.5:ENST00000550194.5:ENST00000551873.5:ENST00000547867.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	44	2	2.06491	3.5795699999999995	5.09423	0.0304733	0.00204588	0.143385	0.04086
chr17	1357719	1357818	6699176	0	-	0.484848	(0.476,0.515]	chr17	655527	30	INTRON	INTRON	YWHAE	ENSG00000108953.17	ENST00000264335.13:ENST00000466227.6:ENST00000571732.5:ENST00000573026.1:ENST00000496706.1:ENST00000573196.5:ENST00000575977.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	44	2	2.06491	3.5795699999999995	5.09423	0.0304733	0.00204588	0.143385	0.04086
chr17	81590983	81591082	6849131	0	-	0.50505	(0.476,0.515]	chr17	678168	15	INTRON	INTRON	NPLOC4	ENSG00000182446.14	ENST00000331134.11:ENST00000374747.9:ENST00000574897.5:ENST00000572351.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	44	2	2.06491	3.5795699999999995	5.09423	0.0304733	0.00204588	0.143385	0.04086
chr9	137182162	137182262	4375770	0	-	0.51	(0.476,0.515]	chr9	403328	3	SS3_PROX	SS3_PROX:INTRON	ANAPC2	ENSG00000176248.9	ENST00000323927.3:ENST00000471131.2:ENST00000495611.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	44	2	2.06491	3.5795699999999995	5.09423	0.0304733	0.00204588	0.143385	0.04086
chr5	39023535	39023635	2605139	0	-	0.2	[0,0.28]	chr5	247896	20	INTRON	INTRON	RICTOR	ENSG00000164327.13	ENST00000357387.8:ENST00000511516.5:ENST00000296782.9:ENST00000510711.5:ENST00000513566.1:ENST00000514735.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	41	2	2.69187	3.5795649999999997	4.46726	0.0427997	0.0221271	0.148082	0.123903
chr7	77704341	77704441	3343148	0	+	0.18	[0,0.28]	chr7	311432	66	INTRON	INTRON	RSBN1L	ENSG00000187257.16	ENST00000334955.13:ENST00000445288.5	protein_coding	protein_coding	protein_coding	protein_coding	1	41	2	2.69187	3.5795649999999997	4.46726	0.0427997	0.0221271	0.148082	0.123903
chr8	108482268	108482367	3847385	0	+	0.272727	[0,0.28]	chr8	354338	28	INTRON	INTRON	EMC2	ENSG00000104412.8	ENST00000220853.8:ENST00000519642.1:ENST00000520294.5:ENST00000519450.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	41	2	2.69187	3.5795649999999997	4.46726	0.0427997	0.0221271	0.148082	0.123903
chr16	89288977	89289073	6541549	0	-	0.572917	(0.57,1]	chr16	634151	1	SS3_PROX	SS3_PROX:INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000644285.1:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000645212.1:ENST00000646345.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	22	2	2.66801	3.5795399999999997	4.49107	0.0169968	0.00220544	0.110899	0.0417893
chr19	5707331	5707419	7124577	0	-	0.636364	(0.57,1]	chr19	717136	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	LONP1	ENSG00000196365.12	ENST00000360614.8:ENST00000587552.5:ENST00000540670.6:ENST00000593119.5:ENST00000585374.5:ENST00000590558.5:ENST00000590729.5:ENST00000590206.1:ENST00000588589.5:ENST00000587365.1:ENST00000591321.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	22	2	2.66801	3.5795399999999997	4.49107	0.0169968	0.00220544	0.110899	0.0417893
chr4	73204197	73204297	2160280	0	-	0.58	(0.57,1]	chr4	212794	263	INTRON	INTRON	ANKRD17	ENSG00000132466.20	ENST00000358602.9:ENST00000558247.5:ENST00000330838.10:ENST00000509867.6:ENST00000561029.1:ENST00000559367.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	22	2	2.66801	3.5795399999999997	4.49107	0.0169968	0.00220544	0.110899	0.0417893
chrX	24694104	24694204	7631684	0	+	0.65	(0.57,1]	chrX	781592	1	SS5_PROX	SS5_PROX:INTRON	POLA1	ENSG00000101868.13	ENST00000678847.1:ENST00000672178.1:ENST00000379068.8:ENST00000677890.1:ENST00000379059.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	22	2	2.66801	3.5795399999999997	4.49107	0.0169968	0.00220544	0.110899	0.0417893
chrX	134775363	134775463	7893277	0	-	0.62	(0.57,1]	chrX	803518	27	INTRON	INTRON	PABIR2	ENSG00000156504.17	ENST00000343004.10:ENST00000370790.5:ENST00000298090.10:ENST00000478384.5:ENST00000486347.5:ENST00000465128.3:ENST00000493333.5:ENST00000611027.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	22	2	2.66801	3.5795399999999997	4.49107	0.0169968	0.00220544	0.110899	0.0417893
chr3	101492075	101492174	1758363	0	-	0.515152	(0.476,0.515]	chr3	178331	327	INTRON	INTRON	SENP7	ENSG00000138468.16	ENST00000394095.7:ENST00000314261.11:ENST00000394094.6:ENST00000394091.5:ENST00000348610.3	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	2.23335	3.57932	4.92529	0.0634557	0.00180221	0.177047	0.0392772
chr3	196933128	196933227	1597107	0	+	0.525253	(0.515,0.57]	chr3	165450	13	UTR3	UTR3:EXON_MRNA	SENP5	ENSG00000119231.11	ENST00000323460.10	protein_coding	protein_coding	protein_coding	protein_coding	4	61	2	2.09379	3.5791899999999996	5.06459	0.00680216	6.03964e-4	0.071184	0.0223465
chr11	63757261	63757359	4800684	0	+	0.265306	[0,0.28]	chr11	444985	7	INTRON	INTRON	RTN3	ENSG00000133318.14	ENST00000341307.6:ENST00000356000.7:ENST00000339997.8:ENST00000540798.5:ENST00000537981.5:ENST00000377819.10:ENST00000536011.5:ENST00000354497.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	43	2	2.95729	3.579175	4.20106	0.0695895	0.0101824	0.184298	0.089002
chr21	34118294	34118393	7401543	0	+	0.222222	[0,0.28]	chr21	753975	122	INTRON	INTRON	MRPS6	ENSG00000243927.6	ENST00000488492.5:ENST00000477091.5:ENST00000399312.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	43	2	2.95729	3.579175	4.20106	0.0695895	0.0101824	0.184298	0.089002
chr8	140957924	140958024	4079643	0	-	0.28	[0,0.28]	chr8	370582	32	INTRON	INTRON	PTK2	ENSG00000169398.20	ENST00000696786.1:ENST00000522684.5:ENST00000395218.3:ENST00000521059.5:ENST00000519993.5:ENST00000340930.7:ENST00000524357.5:ENST00000521791.5:ENST00000523067.5:ENST00000520828.5:ENST00000519881.5:ENST00000520892.5:ENST00000523803.5:ENST00000521907.5:ENST00000517453.5:ENST00000520045.5:ENST00000521332.5:ENST00000524040.5:ENST00000523679.1:ENST00000524257.5:ENST00000523797.1:ENST00000519635.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	43	2	2.95729	3.579175	4.20106	0.0695895	0.0101824	0.184298	0.089002
chr17	30122566	30122666	6587446	0	+	0.5	(0.476,0.515]	chr17	640557	40	INTRON	INTRON	NSRP1	ENSG00000126653.18	ENST00000540900.7:ENST00000584423.5:ENST00000612959.4:ENST00000247026.10:ENST00000577289.6:ENST00000584154.5:ENST00000394826.8:ENST00000479218.6:ENST00000475652.5:ENST00000584317.5:ENST00000583301.5:ENST00000585881.5:ENST00000467446.6:ENST00000580103.6:ENST00000581048.5:ENST00000588614.1:ENST00000589608.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	72	2	3.53362	3.57913	3.62464	0.00102391	5.079e-4	0.029231300000000002	0.0202328
chr14	102039832	102039907	5821074	0	+	0.4	(0.378,0.408]	chr14	552263	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DYNC1H1	ENSG00000197102.14	ENST00000360184.10:ENST00000684561.1:ENST00000680313.1:ENST00000679720.1:ENST00000680715.1:ENST00000681283.1:ENST00000681822.1:ENST00000679910.1:ENST00000681574.1:ENST00000645039.2:ENST00000645149.2:ENST00000680200.1:ENST00000680120.1:ENST00000644881.2:ENST00000681066.1:ENST00000680423.1:ENST00000681536.1:ENST00000679486.1:ENST00000681010.1:ENST00000679629.1:ENST00000681123.1:ENST00000647366.1:ENST00000645697.1:ENST00000643437.1:ENST00000643829.1:ENST00000647204.2:ENST00000644794.1:ENST00000556139.2:ENST00000645085.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	54	2	2.09402	3.5790699999999998	5.06412	0.0126438	0.0030522	0.0982897	0.0493883
chr10	68500861	68500959	4640013	0	-	0.459184	(0.44,0.476]	chr10	426782	40	INTRON	INTRON	SLC25A16	ENSG00000122912.15	ENST00000609923.6:ENST00000265870.7:ENST00000493963.5:ENST00000474927.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	33	2	2.81896	3.578975	4.33899	0.0206616	0.0120766	0.110999	0.0962311
chr12	62572678	62572777	5152257	0	+	0.464646	(0.44,0.476]	chr12	487623	7	INTRON	INTRON	MON2	ENSG00000061987.16	ENST00000641654.1:ENST00000546600.5:ENST00000393630.8:ENST00000547095.5:ENST00000552738.5:ENST00000393629.6:ENST00000551307.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	33	2	2.81896	3.578975	4.33899	0.0206616	0.0120766	0.110999	0.0962311
chr17	59064805	59064905	6801501	0	-	0.45	(0.44,0.476]	chr17	671760	4	SS3_PROX	SS3_PROX:INTRON	TRIM37	ENSG00000108395.14	ENST00000393066.7:ENST00000577554.5:ENST00000262294.12:ENST00000393065.6:ENST00000581468.1:ENST00000582852.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	33	2	2.81896	3.578975	4.33899	0.0206616	0.0120766	0.110999	0.0962311
chr19	40455623	40455721	7184479	0	-	0.44898	(0.44,0.476]	chr19	726746	38	INTRON	INTRON	BLVRB	ENSG00000090013.11	ENST00000643519.1:ENST00000263368.9:ENST00000595483.5:ENST00000643596.1:ENST00000601346.5:ENST00000597870.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	33	2	2.81896	3.578975	4.33899	0.0206616	0.0120766	0.110999	0.0962311
chr5	133102969	133103068	2488531	0	+	0.444444	(0.44,0.476]	chr5	237564	7	INTRON	INTRON	HSPA4	ENSG00000170606.16	ENST00000304858.7:ENST00000514825.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	33	2	2.81896	3.578975	4.33899	0.0206616	0.0120766	0.110999	0.0962311
chr5	160045734	160045833	2529071	0	+	0.444444	(0.44,0.476]	chr5	241983	22	INTRON	INTRON	TTC1	ENSG00000113312.12	ENST00000682719.1:ENST00000522793.5:ENST00000682151.1:ENST00000684137.1:ENST00000684018.1:ENST00000683219.1:ENST00000682172.1:ENST00000231238.10:ENST00000682131.1:ENST00000684515.1:ENST00000683631.1:ENST00000682457.1:ENST00000522073.5:ENST00000520274.1:ENST00000684527.1:ENST00000682255.1:ENST00000518560.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	33	2	2.81896	3.578975	4.33899	0.0206616	0.0120766	0.110999	0.0962311
chr8	43078058	43078158	3746073	0	+	0.45	(0.44,0.476]	chr8	348547	8	UTR3	UTR3:EXON_MRNA:INTRON	FNTA	ENSG00000168522.13	ENST00000526755.5:ENST00000302279.8:ENST00000533383.5:ENST00000533998.5:ENST00000529687.5:ENST00000533336.1:ENST00000525099.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	33	2	2.81896	3.578975	4.33899	0.0206616	0.0120766	0.110999	0.0962311
chr1	20782423	20782522	389820	0	-	0.50505	(0.476,0.515]	chr1	46582	15	INTRON	INTRON	HP1BP3	ENSG00000127483.19	ENST00000438032.6:ENST00000312239.10:ENST00000424732.5:ENST00000417710.5:ENST00000375000.5:ENST00000437575.5:ENST00000419490.5:ENST00000414993.1:ENST00000443615.1	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	2.63168	3.5788399999999996	4.526	0.0237106	0.00699701	0.118716	0.0754576
chr10	26856053	26856153	4584452	0	-	0.51	(0.476,0.515]	chr10	422409	159	INTRON	INTRON	ABI1	ENSG00000136754.18	ENST00000376138.7:ENST00000376166.5:ENST00000376160.5:ENST00000376139.6:ENST00000376142.6:ENST00000359188.8:ENST00000376170.8:ENST00000536334.5:ENST00000490841.6:ENST00000376137.8:ENST00000376140.4:ENST00000346832.10	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	2.63168	3.5788399999999996	4.526	0.0237106	0.00699701	0.118716	0.0754576
chr12	102134835	102134935	5205006	0	+	0.5	(0.476,0.515]	chr12	492808	104	INTRON	INTRON	PARPBP	ENSG00000185480.12	ENST00000327680.7:ENST00000541394.5:ENST00000543784.5:ENST00000392909.7:ENST00000537257.5:ENST00000392911.6:ENST00000541668.5:ENST00000392914.3:ENST00000457614.6:ENST00000417507.6:ENST00000412715.3:ENST00000535811.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	35	2	2.63168	3.5788399999999996	4.526	0.0237106	0.00699701	0.118716	0.0754576
chr7	77843983	77844083	3344404	0	+	0.49	(0.476,0.515]	chr7	311490	33	INTRON	INTRON	PHTF2	ENSG00000006576.17	ENST00000422959.7:ENST00000416283.6:ENST00000307305.12:ENST00000424760.5:ENST00000415251.6:ENST00000275575.11:ENST00000450574.5:ENST00000248550.7	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	2.63168	3.5788399999999996	4.526	0.0237106	0.00699701	0.118716	0.0754576
chr2	24610718	24610818	710455	0	+	0.29	(0.28,0.32]	chr2	82224	258	INTRON	INTRON	NCOA1	ENSG00000084676.16	ENST00000348332.8:ENST00000496333.5:ENST00000406961.5:ENST00000405141.5:ENST00000407230.5:ENST00000483904.5:ENST00000288599.9:ENST00000395856.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	51	2	2.28998	3.578645	4.86731	0.0166401	0.0116253	0.110511	0.0889104
chr7	65049138	65049238	3321483	0	+	0.22	[0,0.28]	chr7	308810	102	INTRON	INTRON	CCT6P3	ENSG00000234585.6	ENST00000419314.5:ENST00000426828.5	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript	2	55	2	2.15457	3.5786	5.00263	0.0269306	0.013055	0.135288	0.093385
chr8	41768718	41768818	3938771	0	-	0.5	(0.476,0.515]	chr8	361123	102	INTRON	INTRON	ANK1	ENSG00000029534.21	ENST00000347528.8:ENST00000265709.13:ENST00000289734.13	protein_coding	protein_coding	protein_coding	protein_coding	2	47	2	2.16377	3.578595	4.99342	0.0243026	0.00139274	0.12011	0.0341261
chr11	120356941	120357041	4876405	0	+	0.33	(0.32,0.35]	chr11	455798	193	INTRON	INTRON	ARHGEF12	ENSG00000196914.9	ENST00000397843.7:ENST00000356641.7	protein_coding	protein_coding	protein_coding	protein_coding	1	40	2	2.68921	3.578395	4.46758	0.0230336	0.0119306	0.118056	0.0962115
chr17	19300386	19300486	6571379	0	+	0.34	(0.32,0.35]	chr17	638985	142	INTRON	INTRON	EPN2	ENSG00000072134.16	ENST00000314728.10:ENST00000347697.6:ENST00000395618.7:ENST00000580579.5:ENST00000395628.6:ENST00000575595.5:ENST00000494192.6:ENST00000395620.6:ENST00000495155.5:ENST00000395626.5:ENST00000571254.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	40	2	2.68921	3.578395	4.46758	0.0230336	0.0119306	0.118056	0.0962115
chr15	90989617	90989716	6259615	0	-	0.272727	[0,0.28]	chr15	597349	32	INTRON	INTRON	PRC1:ENSG00000284946	ENSG00000198901.14:ENSG00000284946.1	ENST00000394249.8:ENST00000361188.9:ENST00000643536.1:ENST00000442656.6:ENST00000647331.1:ENST00000553494.5:ENST00000557763.5:ENST00000417173.6:ENST00000560605.1:ENST00000557905.5:ENST00000555791.5:ENST00000555745.5:ENST00000559811.1:ENST00000556129.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	55	2	1.8986	3.578375	5.25815	0.0531512	0.0066548	0.179787	0.0703807
chr7	53803522	53803622	3534185	0	-	0.28	[0,0.28]	chr7	329607	223	INTRON	INTRON	LINC01446	ENSG00000205628.5	ENST00000380970.2:ENST00000663138.2:ENST00000660945.1:ENST00000662931.1:ENST00000661502.1:ENST00000670945.1:ENST00000666213.1:ENST00000663312.1:ENST00000660413.1:ENST00000652440.1:ENST00000665927.1:ENST00000659794.1:ENST00000670507.1:ENST00000659481.1:ENST00000659250.1:ENST00000662259.1:ENST00000669638.1:ENST00000650830.1:ENST00000668489.1:ENST00000652104.1:ENST00000656718.1:ENST00000663872.1:ENST00000660958.1:ENST00000656885.1:ENST00000654050.1:ENST00000651858.1:ENST00000651506.1:ENST00000658338.1:ENST00000651951.1	lncRNA	lncRNA	lncRNA	lncRNA	2	55	2	1.8986	3.578375	5.25815	0.0531512	0.0066548	0.179787	0.0703807
chr1	150648220	150648320	551411	0	-	0.47	(0.44,0.476]	chr1	64809	21	UTR3	UTR3:EXON_MRNA	GOLPH3L	ENSG00000143457.11	ENST00000271732.8	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	2.39604	3.57836	4.76068	0.0404291	0.00653414	0.161534	0.0699952
chr10	21635518	21635618	4405435	0	+	0.45	(0.44,0.476]	chr10	406487	104	INTRON	INTRON	MLLT10	ENSG00000078403.17	ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000651298.1:ENST00000377059.7:ENST00000652258.1:ENST00000651382.1:ENST00000438473.6:ENST00000650921.1:ENST00000651405.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	33	2	2.39604	3.57836	4.76068	0.0404291	0.00653414	0.161534	0.0699952
chr12	54245914	54246014	5330549	0	-	0.45	(0.44,0.476]	chr12	508608	4	SS5_PROX	SS5_PROX:INTRON	CBX5	ENSG00000094916.16	ENST00000209875.9:ENST00000439541.6:ENST00000547872.1:ENST00000550411.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	33	2	2.39604	3.57836	4.76068	0.0404291	0.00653414	0.161534	0.0699952
chr9	86008164	86008264	4149614	0	+	0.46	(0.44,0.476]	chr9	378479	3	INTRON	INTRON	NAA35	ENSG00000135040.16	ENST00000361671.10	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	2.39604	3.57836	4.76068	0.0404291	0.00653414	0.161534	0.0699952
chr6	10782575	10782675	2811028	0	+	0.48	(0.476,0.515]	chr6	264506	120	INTRON	INTRON	TMEM14B	ENSG00000137210.14	ENST00000463448.5:ENST00000473166.5:ENST00000460341.5:ENST00000473807.5:ENST00000463100.5:ENST00000478732.1:ENST00000467229.1:ENST00000489137.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	2	73	2	3.44784	3.57833	3.70882	0.00113238	4.74495e-4	0.0308465	0.0201638
chr11	108138397	108138477	4856977	0	+	0.475	(0.44,0.476]	chr11	453030	1	SS3_PROX	SS3_PROX:INTRON	ACAT1	ENSG00000075239.14	ENST00000672284.1:ENST00000672580.1:ENST00000265838.9:ENST00000672367.1:ENST00000672907.1:ENST00000673531.1:ENST00000672031.1:ENST00000672354.1:ENST00000531813.5:ENST00000672008.1:ENST00000671707.1:ENST00000673000.1:ENST00000528370.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	35	2	2.29842	3.5782950000000002	4.85817	0.0552483	0.00223254	0.165463	0.0435144
chr12	76825910	76826009	5174483	0	+	0.474747	(0.44,0.476]	chr12	490131	30	INTRON	INTRON	ZDHHC17	ENSG00000186908.15	ENST00000546778.5:ENST00000426126.7:ENST00000552453.5:ENST00000550876.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	35	2	2.29842	3.5782950000000002	4.85817	0.0552483	0.00223254	0.165463	0.0435144
chr17	2148773	2148873	6703153	0	-	0.47	(0.44,0.476]	chr17	656271	538	INTRON	INTRON	SMG6	ENSG00000070366.14	ENST00000263073.11:ENST00000354901.8:ENST00000536871.6:ENST00000575454.1:ENST00000570874.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	35	2	2.29842	3.5782950000000002	4.85817	0.0552483	0.00223254	0.165463	0.0435144
chr19	4010452	4010551	7001217	0	+	0.444444	(0.44,0.476]	chr19	694394	23	INTRON	INTRON	PIAS4	ENSG00000105229.7	ENST00000262971.3:ENST00000599999.5:ENST00000600566.5:ENST00000593518.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	35	2	2.29842	3.5782950000000002	4.85817	0.0552483	0.00223254	0.165463	0.0435144
chr19	7939553	7939649	7130286	0	-	0.46875	(0.44,0.476]	chr19	718340	10	INTRON	INTRON	TIMM44	ENSG00000104980.8	ENST00000270538.8:ENST00000595831.5:ENST00000595876.5:ENST00000597926.1:ENST00000600748.5:ENST00000600000.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	35	2	2.29842	3.5782950000000002	4.85817	0.0552483	0.00223254	0.165463	0.0435144
chr20	32371377	32371477	7255954	0	+	0.47	(0.44,0.476]	chr20	737067	2	SS3_PROX	SS3_PROX:INTRON	ASXL1	ENSG00000171456.21	ENST00000651418.1:ENST00000375687.10:ENST00000613218.4:ENST00000646367.1:ENST00000644587.1:ENST00000620121.4:ENST00000645337.1:ENST00000649901.1:ENST00000646985.1:ENST00000645035.1:ENST00000497249.6:ENST00000643168.1:ENST00000375689.5:ENST00000306058.9:ENST00000555343.2:ENST00000645688.1:ENST00000642676.1:ENST00000470145.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	35	2	2.29842	3.5782950000000002	4.85817	0.0552483	0.00223254	0.165463	0.0435144
chr1	23151971	23152071	398849	0	-	0.32	(0.28,0.32]	chr1	47812	184	INTRON	INTRON	LUZP1	ENSG00000169641.14	ENST00000302291.8:ENST00000314174.5:ENST00000471849.5	protein_coding	protein_coding	protein_coding	protein_coding	2	51	2	1.90263	3.578255	5.25388	0.0503272	0.00385849	0.17488	0.0542786
chr12	69379562	69379661	5164138	0	+	0.363636	(0.35,0.378]	chr12	489118	82	INTRON	INTRON	YEATS4	ENSG00000127337.7	ENST00000548020.5:ENST00000247843.7	protein_coding	protein_coding	protein_coding	protein_coding	2	46	2	2.17079	3.5782000000000003	4.98561	0.0225978	0.00474226	0.124921	0.0600445
chr1	160321941	160322040	572099	0	-	0.333333	(0.32,0.35]	chr1	69341	75	INTRON	INTRON	COPA	ENSG00000122218.17	ENST00000241704.8:ENST00000696204.1:ENST00000696203.1:ENST00000696202.1:ENST00000649963.1:ENST00000696208.1:ENST00000696207.1:ENST00000696206.1:ENST00000649676.1:ENST00000368069.7:ENST00000647693.1:ENST00000649787.1:ENST00000650154.1:ENST00000647799.1:ENST00000648805.1:ENST00000647683.1:ENST00000649231.1:ENST00000648501.1:ENST00000696209.1:ENST00000696210.1:ENST00000696211.1:ENST00000647899.1:ENST00000696212.1:ENST00000696214.1:ENST00000696213.1:ENST00000696215.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	48	2	2.19668	3.578195	4.95971	0.021398	0.00663522	0.123719	0.0703181
chr2	241293960	241294060	1348352	0	-	0.35	(0.32,0.35]	chr2	141648	210	INTRON	INTRON	HDLBP	ENSG00000115677.18	ENST00000310931.10:ENST00000391976.6:ENST00000428482.5:ENST00000430918.5:ENST00000441124.5:ENST00000413241.5:ENST00000423693.5:ENST00000425989.5:ENST00000420451.5:ENST00000417540.5:ENST00000462130.1:ENST00000496569.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	48	2	2.19668	3.578195	4.95971	0.021398	0.00663522	0.123719	0.0703181
chr6	42054932	42055030	2864713	0	+	0.469388	(0.44,0.476]	chr6	270956	31	INTRON	INTRON	TAF8	ENSG00000137413.17	ENST00000372978.7:ENST00000686935.1:ENST00000372982.8:ENST00000456846.6:ENST00000494547.5:ENST00000372977.8:ENST00000688562.1:ENST00000686229.1:ENST00000691805.1:ENST00000472818.6:ENST00000687601.1:ENST00000688007.1:ENST00000689833.1:ENST00000482926.1:ENST00000687266.1:ENST00000465926.5:ENST00000482432.1:ENST00000684962.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	35	2	3.14559	3.577985	4.01038	0.0433743	0.00384923	0.148082	0.0562562
chr6	43582319	43582419	2871537	0	+	0.46	(0.44,0.476]	chr6	272256	1	CDS_START	CDS_START:CDS:EXON_MRNA:INTRON	POLH	ENSG00000170734.12	ENST00000372236.9:ENST00000372226.1:ENST00000443535.1	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	3.14559	3.577985	4.01038	0.0433743	0.00384923	0.148082	0.0562562
chr9	111383732	111383832	4314247	0	-	0.51	(0.476,0.515]	chr9	396657	4	SS3_PROX	SS3_PROX:INTRON	ECPAS	ENSG00000136813.15	ENST00000684092.1:ENST00000338205.9:ENST00000259335.8	protein_coding	protein_coding	protein_coding	protein_coding	2	74	2	3.10264	3.577985	4.05333	0.00543163	5.62932e-5	0.0645052	0.00613846
chr1	155451636	155451736	561776	0	-	0.46	(0.44,0.476]	chr1	67081	107	INTRON	INTRON	ASH1L	ENSG00000116539.14	ENST00000676814.1:ENST00000392403.8:ENST00000368346.7:ENST00000677213.1:ENST00000678117.1:ENST00000679097.1:ENST00000679333.1:ENST00000677042.1:ENST00000678699.1:ENST00000677825.1:ENST00000679133.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	35	2	2.5364	3.5779699999999997	4.61954	0.0309324	0.00506805	0.13151	0.0646039
chr15	58700780	58700879	6193024	0	-	0.454545	(0.44,0.476]	chr15	589976	20	INTRON	INTRON	ADAM10	ENSG00000137845.15	ENST00000260408.8:ENST00000402627.5:ENST00000561288.1:ENST00000559053.1:ENST00000558733.5:ENST00000439637.5:ENST00000497846.5:ENST00000558004.1:ENST00000560608.5:ENST00000561149.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	35	2	2.5364	3.5779699999999997	4.61954	0.0309324	0.00506805	0.13151	0.0646039
chr17	2365741	2365841	6547256	0	+	0.45	(0.44,0.476]	chr17	635140	4	SS5_PROX	SS5_PROX:INTRON	SGSM2	ENSG00000141258.13	ENST00000268989.8:ENST00000426855.6:ENST00000574563.5:ENST00000574857.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	35	2	2.5364	3.5779699999999997	4.61954	0.0309324	0.00506805	0.13151	0.0646039
chr6	10723441	10723541	2810581	0	+	0.46	(0.44,0.476]	chr6	264431	2	SS5_PROX	SS5_PROX:INTRON	TMEM14C	ENSG00000111843.14	ENST00000541412.5:ENST00000229563.6:ENST00000466421.5:ENST00000467415.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	45	2	2.54944	3.577955	4.60647	0.0102339	0.00591346	0.0850389	0.0694038
chr12	28252164	28252264	5100889	0	+	0.4	(0.378,0.408]	chr12	481914	256	INTRON	INTRON	CCDC91	ENSG00000123106.11	ENST00000540794.5:ENST00000538586.5:ENST00000536154.5:ENST00000535520.5:ENST00000539107.5:ENST00000544649.5:ENST00000545336.5:ENST00000536442.6:ENST00000544780.5:ENST00000543534.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	36	2	2.30961	3.57794	4.84627	0.055088	0.00254319	0.165463	0.0465056
chr4	57002112	57002209	1964170	0	+	0.505155	(0.476,0.515]	chr4	197134	20	INTRON	INTRON	POLR2B	ENSG00000047315.17	ENST00000381227.5:ENST00000431623.6:ENST00000441246.6:ENST00000314595.6	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	2.82673	3.57794	4.32915	0.0134403	0.0124637	0.0973643	0.0946278
chr16	27463682	27463773	6466379	0	-	0.593407	(0.57,1]	chr16	624235	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	GTF3C1	ENSG00000077235.18	ENST00000356183.9:ENST00000561623.5:ENST00000569653.1:ENST00000562609.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	41	2	3.2676	3.5778299999999996	3.88806	0.00176203	6.56297e-5	0.0376652	0.0067007
chr12	112083219	112083318	5415167	0	-	0.444444	(0.44,0.476]	chr12	517230	17	INTRON	INTRON	NAA25	ENSG00000111300.10	ENST00000261745.9:ENST00000552527.5:ENST00000549711.5:ENST00000551858.1:ENST00000547133.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	179	2	3.03369	3.57771	4.12173	5.18787e-5	2.6569e-6	0.00587266	0.00115411
chr9	7022814	7022914	4102829	0	+	0.38	(0.378,0.408]	chr9	373762	65	INTRON	INTRON	KDM4C	ENSG00000107077.19	ENST00000536108.5:ENST00000381306.7:ENST00000381309.8:ENST00000543771.5:ENST00000428870.6:ENST00000420847.2	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	2.46373	3.57771	4.69169	0.0382831	0.00432302	0.141795	0.0599409
chr1	26275371	26275471	49910	0	+	0.56	(0.515,0.57]	chr1	6257	3	SS5_PROX	SS5_PROX:INTRON	CEP85	ENSG00000130695.16	ENST00000451429.8:ENST00000640292.2:ENST00000252992.8:ENST00000453146.1:ENST00000469609.5:ENST00000491670.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	40	2	2.11313	3.57769	5.04225	0.0256725	0.00131841	0.133676	0.0331539
chr17	37253336	37253436	6761490	0	-	0.43	(0.408,0.44]	chr17	664865	3	SS3_PROX	SS3_PROX:INTRON	ACACA	ENSG00000278540.5	ENST00000616317.5:ENST00000614428.4:ENST00000612895.4:ENST00000617649.4:ENST00000613146.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	68	2	1.91269	3.57768	5.24267	0.0153219	4.83767e-4	0.100173	0.0199261
chr21	38101934	38102034	7463905	0	-	0.28	[0,0.28]	chr21	760303	22	INTRON	INTRON	DSCR4	ENSG00000184029.9	ENST00000398948.5:ENST00000328264.7:ENST00000482032.1	lncRNA	lncRNA	lncRNA	lncRNA	2	56	2	2.33097	3.57765	4.82433	0.0200334	0.0158969	0.109608	0.109464
chr1	113902302	113902385	526656	0	-	0.409639	(0.408,0.44]	chr1	62027	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	AP4B1	ENSG00000134262.13	ENST00000369569.6:ENST00000256658.8:ENST00000369567.5:ENST00000484201.5:ENST00000369564.5:ENST00000489499.5:ENST00000432415.5:ENST00000489092.5:ENST00000369571.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	36	2	2.71911	3.5774550000000005	4.4358	0.0189489	0.00893097	0.108861	0.0849778
chr12	73822981	73823081	5363665	0	-	0.43	(0.408,0.44]	chr12	512060	17	INTRON	INTRON	LINC02882	ENSG00000251138.7	ENST00000663261.1:ENST00000665907.1	lncRNA	lncRNA	lncRNA	lncRNA	1	36	2	2.71911	3.5774550000000005	4.4358	0.0189489	0.00893097	0.108861	0.0849778
chr2	75890986	75891086	817069	0	+	0.42	(0.408,0.44]	chr2	91391	181	INTRON	INTRON	ENSG00000287474	ENSG00000287474.1	ENST00000670606.1	lncRNA	lncRNA	lncRNA	lncRNA	1	36	2	2.71911	3.5774550000000005	4.4358	0.0189489	0.00893097	0.108861	0.0849778
chr6	140246953	140247053	2968925	0	+	0.32	(0.28,0.32]	chr6	279015	979	INTRON	INTRON	ENSG00000288714	ENSG00000288714.1	ENST00000683950.1	lncRNA	lncRNA	lncRNA	lncRNA	1	41	2	2.18975	3.5771450000000002	4.96454	0.0776042	0.00344078	0.196285	0.0539802
chr19	32695162	32695261	7049708	0	+	0.434343	(0.408,0.44]	chr19	702960	21	INTRON	INTRON	NUDT19	ENSG00000213965.4	ENST00000397061.4	protein_coding	protein_coding	protein_coding	protein_coding	3	100	2	3.32195	3.5770600000000004	3.83217	2.54513e-4	1.79883e-4	0.0147895	0.0116696
chr10	68344095	68344193	4638506	0	-	0.377551	(0.35,0.378]	chr10	426523	8	UTR3	UTR3:EXON_MRNA:INTRON	RUFY2	ENSG00000204130.14	ENST00000466493.5:ENST00000484083.5:ENST00000463210.6:ENST00000466187.2:ENST00000602465.6:ENST00000388768.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	46	2	2.23043	3.57699	4.92355	0.0187487	0.00573514	0.117523	0.0657377
chr2	131078598	131078697	1228943	0	-	0.363636	(0.35,0.378]	chr2	130987	63	INTRON	INTRON	FAM168B	ENSG00000152102.18	ENST00000389915.4:ENST00000409185.5	protein_coding	protein_coding	protein_coding	protein_coding	2	46	2	2.23043	3.57699	4.92355	0.0187487	0.00573514	0.117523	0.0657377
chr16	89393851	89393947	6542625	0	-	0.34375	(0.32,0.35]	chr16	634244	8	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000647238.1:ENST00000644045.1:ENST00000643147.1:ENST00000644139.1:ENST00000568512.6:ENST00000566973.1:ENST00000562211.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	137	2	2.51487	3.57689	4.63891	0.00349334	2.5847e-6	0.0523105	0.00102358
chr7	64799567	64799667	3320396	0	+	0.31	(0.28,0.32]	chr7	308703	46	INTRON	INTRON	ZNF138	ENSG00000197008.10	ENST00000359735.7:ENST00000440155.6:ENST00000494380.5:ENST00000307355.12:ENST00000437743.1:ENST00000440598.2:ENST00000430838.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	41	2	2.39347	3.5768899999999997	4.76031	0.0504457	0.00656106	0.156383	0.0735539
chr7	105309070	105309170	3603107	0	-	0.31	(0.28,0.32]	chr7	336161	21	INTRON	INTRON	SRPK2	ENSG00000135250.17	ENST00000393651.8:ENST00000482897.5:ENST00000460391.5:ENST00000462282.5:ENST00000465112.5:ENST00000482862.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	41	2	2.39347	3.5768899999999997	4.76031	0.0504457	0.00656106	0.156383	0.0735539
chr2	119772618	119772717	856122	0	+	0.484848	(0.476,0.515]	chr2	96170	6	INTRON	INTRON	PTPN4	ENSG00000088179.9	ENST00000263708.7:ENST00000460162.1:ENST00000420482.5:ENST00000460289.5:ENST00000488279.6:ENST00000485247.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	33	2	2.80729	3.576885	4.34648	0.0193566	0.0126008	0.108861	0.0980703
chr20	34418879	34418977	7259676	0	+	0.5	(0.476,0.515]	chr20	737453	2	EXON_LNCRNA	EXON_LNCRNA:INTRON	ITCH	ENSG00000078747.16	ENST00000374864.10:ENST00000535650.7:ENST00000670516.1:ENST00000658310.1:ENST00000665484.1:ENST00000664852.1:ENST00000660337.1:ENST00000665428.1:ENST00000262650.10:ENST00000662871.1:ENST00000665346.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	33	2	2.80729	3.576885	4.34648	0.0193566	0.0126008	0.108861	0.0980703
chr4	23019676	23019776	1928319	0	+	0.5	(0.476,0.515]	chr4	193937	144	INTRON	INTRON	ENSG00000248837	ENSG00000248837.7	ENST00000659942.1:ENST00000655325.1:ENST00000655182.1:ENST00000660103.1:ENST00000506425.2:ENST00000652324.1:ENST00000653008.1:ENST00000654546.1:ENST00000666412.1:ENST00000511453.5:ENST00000667179.1:ENST00000655768.1:ENST00000661585.1:ENST00000660296.1:ENST00000663529.1:ENST00000653872.1:ENST00000660370.1:ENST00000667156.1:ENST00000658109.1:ENST00000653188.1:ENST00000662431.1:ENST00000654588.1:ENST00000666579.1:ENST00000503017.2:ENST00000665739.1:ENST00000671537.1:ENST00000663348.1	lncRNA	lncRNA	lncRNA	lncRNA	1	33	2	2.80729	3.576885	4.34648	0.0193566	0.0126008	0.108861	0.0980703
chr7	101251794	101251894	3588220	0	-	0.49	(0.476,0.515]	chr7	334903	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	FIS1	ENSG00000214253.9	ENST00000474120.5:ENST00000473527.5:ENST00000435848.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	33	2	2.80729	3.576885	4.34648	0.0193566	0.0126008	0.108861	0.0980703
chr9	137649968	137650065	4223785	0	+	0.484536	(0.476,0.515]	chr9	388164	32	INTRON	INTRON	EHMT1	ENSG00000181090.21	ENST00000462484.5:ENST00000371394.6:ENST00000630754.2:ENST00000460843.6:ENST00000626216.2:ENST00000629335.2:ENST00000637335.1:ENST00000636376.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	33	2	2.80729	3.576885	4.34648	0.0193566	0.0126008	0.108861	0.0980703
chrX	2355983	2356083	7744163	0	-	0.49	(0.476,0.515]	chrX	792947	176	INTRON	INTRON	DHRSX	ENSG00000169084.15	ENST00000334651.11:ENST00000412516.7:ENST00000444280.6:ENST00000441131.7:ENST00000478825.7:ENST00000430536.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	33	2	2.80729	3.576885	4.34648	0.0193566	0.0126008	0.108861	0.0980703
chr5	131275247	131275346	2484748	0	+	0.363636	(0.35,0.378]	chr5	237114	107	INTRON	INTRON	CDC42SE2	ENSG00000158985.14	ENST00000502840.5:ENST00000511432.5:ENST00000506419.5:ENST00000395246.5:ENST00000505065.2:ENST00000504701.5:ENST00000503291.5:ENST00000360515.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	51	2	2.19034	3.57682	4.9633	0.023941	0.00198929	0.119443	0.0411469
chr1	11017207	11017307	24604	0	+	0.51	(0.476,0.515]	chr1	2582	2	SS5_PROX	SS5_PROX:INTRON	TARDBP	ENSG00000120948.19	ENST00000473118.5:ENST00000639083.1:ENST00000639599.1:ENST00000629725.2:ENST00000439080.6:ENST00000240185.8:ENST00000472476.5:ENST00000476201.5:ENST00000613864.4:ENST00000614757.4:ENST00000621715.4:ENST00000473869.5:ENST00000315091.7:ENST00000616545.4:ENST00000621790.4:ENST00000649624.1:ENST00000622057.4:ENST00000617172.4:ENST00000618606.1:ENST00000611963.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	99	2	3.37147	3.5767949999999997	3.78212	2.36145e-4	1.84258e-4	0.0136195	0.0123223
chr7	107198097	107198195	3378662	0	+	0.316327	(0.28,0.32]	chr7	316368	11	INTRON	INTRON	HBP1	ENSG00000105856.14	ENST00000468410.5:ENST00000222574.9:ENST00000485846.5:ENST00000463202.5:ENST00000461963.1:ENST00000607681.1:ENST00000463790.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	62	2	2.1076	3.576695	5.04579	0.0133585	0.00714672	0.100772	0.0723634
chr11	62607478	62607565	4959969	0	-	0.482759	(0.476,0.515]	chr11	466435	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	EML3	ENSG00000149499.12	ENST00000394773.7:ENST00000278845.8:ENST00000394776.8:ENST00000529309.5:ENST00000494176.6:ENST00000531557.5:ENST00000494448.5:ENST00000438258.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	129	2	3.27481	3.576505	3.8782	2.99781e-4	6.01383e-6	0.0160591	0.0017156
chr1	40064959	40065059	79873	0	+	0.44	(0.408,0.44]	chr1	10365	4	SS5_PROX	SS5_PROX:INTRON	CAP1	ENSG00000131236.18	ENST00000372797.7:ENST00000372802.5:ENST00000421589.5:ENST00000414893.5:ENST00000372792.7:ENST00000372805.8:ENST00000414281.5:ENST00000420216.5:ENST00000372798.5:ENST00000340450.7:ENST00000435719.5:ENST00000427843.5:ENST00000424977.1:ENST00000417287.5	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	2.82042	3.5763999999999996	4.33238	0.0218901	0.0120121	0.11491	0.0962115
chr13	95138496	95138596	5638225	0	-	0.43	(0.408,0.44]	chr13	537056	221	INTRON	INTRON	ABCC4	ENSG00000125257.16	ENST00000645237.2:ENST00000643051.1:ENST00000643842.1:ENST00000646439.1:ENST00000644880.1:ENST00000643816.1:ENST00000536256.3:ENST00000643556.1:ENST00000629385.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	33	2	2.82042	3.5763999999999996	4.33238	0.0218901	0.0120121	0.11491	0.0962115
chr17	1828306	1828406	6702213	0	-	0.41	(0.408,0.44]	chr17	656205	3	SS3_PROX	SS3_PROX:INTRON	SMYD4	ENSG00000186532.12	ENST00000305513.12:ENST00000570368.5:ENST00000571854.5:ENST00000573937.5:ENST00000576633.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	33	2	2.82042	3.5763999999999996	4.33238	0.0218901	0.0120121	0.11491	0.0962115
chr8	99055825	99055925	3811684	0	+	0.42	(0.408,0.44]	chr8	353067	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	VPS13B	ENSG00000132549.20	ENST00000496144.5:ENST00000683334.1:ENST00000682853.1:ENST00000357162.7:ENST00000358544.7:ENST00000683619.1:ENST00000441350.2:ENST00000684269.1:ENST00000682806.1:ENST00000683869.1:ENST00000682153.1:ENST00000682358.1:ENST00000682145.1:ENST00000355155.6:ENST00000682234.1:ENST00000683486.1:ENST00000684308.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	33	2	2.82042	3.5763999999999996	4.33238	0.0218901	0.0120121	0.11491	0.0962115
chr1	41150422	41150520	429898	0	-	0.510204	(0.476,0.515]	chr1	52214	70	INTRON	INTRON	SCMH1	ENSG00000010803.17	ENST00000695335.1:ENST00000372596.5:ENST00000372597.5:ENST00000337495.9:ENST00000372595.5:ENST00000326197.11:ENST00000695336.1:ENST00000456518.3:ENST00000695337.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	33	2	2.38442	3.576345	4.76827	0.0417472	0.00600704	0.161736	0.0674604
chr19	15321038	15321138	7147291	0	-	0.58	(0.57,1]	chr19	721965	407	INTRON	INTRON	BRD4	ENSG00000141867.19	ENST00000679869.1:ENST00000360016.9:ENST00000594841.5:ENST00000597315.5:ENST00000601941.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	136	2	2.74465	3.576345	4.40804	5.17479e-6	2.62094e-8	0.00156089	5.54633e-5
chr3	56668758	56668858	1705871	0	-	0.49	(0.476,0.515]	chr3	175892	2	SS3_PROX	SS3_PROX:INTRON	TASOR	ENSG00000163946.14	ENST00000683822.1:ENST00000493960.6:ENST00000355628.9	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	2.38442	3.576345	4.76827	0.0417472	0.00600704	0.161736	0.0674604
chr1	87031088	87031188	154760	0	+	0.51	(0.476,0.515]	chr1	16969	557	INTRON	INTRON	HS2ST1	ENSG00000153936.18	ENST00000370550.10:ENST00000370551.8:ENST00000687893.1:ENST00000693745.1:ENST00000689904.1:ENST00000690674.1:ENST00000591456.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	38	2	3.05152	3.576325	4.10113	0.0226984	0.0064848	0.124921	0.0699952
chr14	101892215	101892309	5819827	0	+	0.510638	(0.476,0.515]	chr14	551905	16	INTRON	INTRON	PPP2R5C	ENSG00000078304.20	ENST00000694906.1:ENST00000422945.6:ENST00000328724.9:ENST00000350249.7:ENST00000557621.5:ENST00000334743.9:ENST00000445439.7:ENST00000557095.5:ENST00000554137.5:ENST00000556218.5:ENST00000557534.1:ENST00000557716.2:ENST00000556805.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	38	2	3.05152	3.576325	4.10113	0.0226984	0.0064848	0.124921	0.0699952
chr20	2469608	2469704	7305805	0	-	0.5	(0.476,0.515]	chr20	743804	15	INTRON	INTRON	SNRPB	ENSG00000125835.20	ENST00000438552.6:ENST00000381342.7:ENST00000688775.1:ENST00000689440.1:ENST00000474384.2:ENST00000693393.1:ENST00000688423.1:ENST00000690623.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	38	2	3.05152	3.576325	4.10113	0.0226984	0.0064848	0.124921	0.0699952
chr21	15024142	15024242	7431853	0	-	0.24	[0,0.28]	chr21	757984	93	INTRON	INTRON	NRIP1	ENSG00000180530.11	ENST00000400202.5:ENST00000318948.7:ENST00000400199.5:ENST00000638122.1:ENST00000637963.1:ENST00000637630.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	45	2	2.44242	3.576295	4.71017	0.0491024	0.0114708	0.155269	0.0956037
chr20	50928718	50928818	7355852	0	-	0.48	(0.476,0.515]	chr20	750109	1	CDS_START	CDS_START:CDS:UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	ADNP	ENSG00000101126.18	ENST00000621696.5:ENST00000673732.1:ENST00000396029.8:ENST00000644386.1:ENST00000396032.8:ENST00000645081.1:ENST00000642364.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	69	2	1.94611	3.57628	5.20645	0.0075261	0.00136049	0.0773151	0.0336321
chr13	28187310	28187409	5461320	0	+	0.252525	[0,0.28]	chr13	523255	90	INTRON	INTRON	PAN3	ENSG00000152520.14	ENST00000503791.5:ENST00000380958.8:ENST00000399613.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	42	2	2.8569	3.57613	4.29536	0.0590175	0.013822	0.167915	0.10247
chr1	65311237	65311337	136107	0	+	0.59	(0.57,1]	chr1	15352	9	INTRON	INTRON	DNAJC6	ENSG00000116675.16	ENST00000463018.5:ENST00000494710.6:ENST00000263441.11:ENST00000395325.7:ENST00000483402.1:ENST00000371069.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	88	2	2.68957	3.576085	4.4626	5.08262e-5	1.24589e-6	0.00618402	6.49169e-4
chr17	1897853	1897950	6546680	0	+	0.453608	(0.44,0.476]	chr17	635023	8	UTR3	UTR3:EXON_MRNA	RPA1	ENSG00000132383.12	ENST00000254719.10:ENST00000574049.1	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	3.02366	3.5760449999999997	4.12843	0.0337192	0.00603307	0.134145	0.0700813
chr1	37979833	37979933	426429	0	-	0.35	(0.32,0.35]	chr1	51708	3	SS3_PROX	SS3_PROX:INTRON	SF3A3	ENSG00000183431.12	ENST00000373019.5:ENST00000489537.5:ENST00000461869.5:ENST00000470585.5:ENST00000488934.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	58	2	1.72898	3.576015	5.42305	0.0425433	0.00149027	0.161951	0.035
chr21	37401381	37401480	7406568	0	+	0.272727	[0,0.28]	chr21	754850	259	INTRON	INTRON	DYRK1A	ENSG00000157540.22	ENST00000646523.1:ENST00000647425.1:ENST00000647188.2:ENST00000647504.1:ENST00000644942.1:ENST00000338785.8:ENST00000643624.1:ENST00000643551.1:ENST00000426672.6:ENST00000398960.7	protein_coding	protein_coding	protein_coding	protein_coding	4	76	2	1.67675	3.575945	5.47514	0.0352695	0.00354561	0.150332	0.0529186
chr7	32502486	32502586	3303303	0	+	0.21	[0,0.28]	chr7	306758	63	INTRON	INTRON	AVL9	ENSG00000105778.20	ENST00000485228.1:ENST00000318709.9:ENST00000459629.1:ENST00000409301.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	46	2	2.59548	3.57583	4.55618	0.0346067	0.0171034	0.136649	0.110899
chr7	65936085	65936185	3323506	0	+	0.27	[0,0.28]	chr7	309012	622	INTRON	INTRON	VKORC1L1	ENSG00000196715.7	ENST00000360768.5:ENST00000648187.1:ENST00000648179.1:ENST00000434382.2	protein_coding	protein_coding	protein_coding	protein_coding	1	46	2	2.59548	3.57583	4.55618	0.0346067	0.0171034	0.136649	0.110899
chr1	65053662	65053762	475426	0	-	0.43	(0.408,0.44]	chr1	57241	87	INTRON	INTRON	JAK1	ENSG00000162434.13	ENST00000672434.1:ENST00000671954.1:ENST00000673502.1:ENST00000672751.1:ENST00000672099.1	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	2.3975	3.57574	4.75398	0.040266	0.00703931	0.161534	0.0718189
chr16	28153998	28154087	6467876	0	-	0.41573	(0.408,0.44]	chr16	624543	7	INTRON	INTRON	XPO6	ENSG00000169180.12	ENST00000304658.10:ENST00000565698.5:ENST00000564337.5:ENST00000566175.1:ENST00000574435.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	33	2	2.3975	3.57574	4.75398	0.040266	0.00703931	0.161534	0.0718189
chr19	23790354	23790453	7042709	0	+	0.434343	(0.408,0.44]	chr19	702227	30	INTRON	INTRON	RPSAP58	ENSG00000288920.1	ENST00000471224.5:ENST00000692590.1:ENST00000475499.2:ENST00000686829.1:ENST00000689525.1:ENST00000691397.1:ENST00000688405.1:ENST00000687994.1:ENST00000484897.4:ENST00000685490.1:ENST00000462186.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	33	2	2.3975	3.57574	4.75398	0.040266	0.00703931	0.161534	0.0718189
chr8	33455832	33455931	3934867	0	-	0.434343	(0.408,0.44]	chr8	360458	1	INTRON	INTRON	FUT10	ENSG00000172728.16	ENST00000327671.10:ENST00000518672.5:ENST00000524021.1:ENST00000520767.5:ENST00000416169.5:ENST00000520503.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	33	2	2.3975	3.57574	4.75398	0.040266	0.00703931	0.161534	0.0718189
chr10	110599034	110599122	4521012	0	+	0.340909	(0.32,0.35]	chr10	417080	1	EXON_MRNA	EXON_MRNA:INTRON	SMC3	ENSG00000108055.11	ENST00000684988.1:ENST00000361804.5:ENST00000685743.1:ENST00000689321.1:ENST00000689986.1:ENST00000686057.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	53	2	2.09005	3.5757200000000005	5.06139	0.0330483	0.00179023	0.133816	0.0392749
chr1	64960194	64960293	474482	0	-	0.393939	(0.378,0.408]	chr1	57208	28	INTRON	INTRON	JAK1	ENSG00000162434.13	ENST00000342505.5:ENST00000672247.1:ENST00000673046.1:ENST00000672434.1:ENST00000671746.1:ENST00000673254.1:ENST00000673314.1:ENST00000671954.1:ENST00000672179.1:ENST00000673220.1:ENST00000671929.1:ENST00000673502.1:ENST00000672751.1:ENST00000672099.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	59	2	1.86598	3.575595	5.28521	0.0300232	4.52877e-4	0.129138	0.0192381
chr5	139649509	139649607	2501210	0	+	0.571429	(0.57,1]	chr5	239070	1	INTRON	INTRON	CXXC5	ENSG00000171604.12	ENST00000502295.1:ENST00000504944.1:ENST00000302517.8:ENST00000507139.5:ENST00000504844.1:ENST00000502336.5:ENST00000520967.1:ENST00000511048.1	protein_coding	protein_coding	protein_coding	protein_coding	6	93	2	3.17598	3.5754799999999998	3.97498	9.20579e-6	1.04936e-6	0.00218071	6.32938e-4
chr20	32397016	32397116	7256213	0	+	0.44	(0.408,0.44]	chr20	737076	246	INTRON	INTRON	ASXL1	ENSG00000171456.21	ENST00000651418.1:ENST00000375687.10:ENST00000613218.4:ENST00000644587.1:ENST00000620121.4:ENST00000646985.1:ENST00000643168.1:ENST00000306058.9:ENST00000645688.1:ENST00000470145.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	84	2	1.31633	3.575475	5.83462	0.0383278	1.18776e-4	0.158629	0.00987467
chr9	135859983	135860082	4371787	0	-	0.414141	(0.408,0.44]	chr9	402459	92	INTRON	INTRON	CAMSAP1	ENSG00000130559.19	ENST00000389532.9:ENST00000312405.10:ENST00000409386.3:ENST00000492174.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	45	2	2.55103	3.5754099999999998	4.59979	0.0109537	0.00587353	0.0873034	0.0690758
chr2	37218710	37218808	1096601	0	-	0.459184	(0.44,0.476]	chr2	117597	13	INTRON	INTRON	CEBPZ	ENSG00000115816.15	ENST00000234170.10	protein_coding	protein_coding	protein_coding	protein_coding	2	47	2	2.02558	3.575355	5.12513	0.0363567	7.96486e-4	0.138959	0.0258804
chr20	32395917	32396017	7256202	0	+	0.46	(0.44,0.476]	chr20	737076	235	INTRON	INTRON	ASXL1	ENSG00000171456.21	ENST00000651418.1:ENST00000375687.10:ENST00000613218.4:ENST00000644587.1:ENST00000620121.4:ENST00000646985.1:ENST00000643168.1:ENST00000306058.9:ENST00000645688.1:ENST00000470145.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	60	2	1.75023	3.5751150000000003	5.4	0.0240995	7.02611e-4	0.129929	0.024224
chr20	437129	437226	7302967	0	-	0.474227	(0.44,0.476]	chr20	743433	18	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TBC1D20	ENSG00000125875.15	ENST00000680792.1:ENST00000354200.5:ENST00000461304.5:ENST00000681539.1:ENST00000679741.1:ENST00000680990.1:ENST00000681129.1:ENST00000681414.1:ENST00000681441.1:ENST00000680088.1:ENST00000680284.1:ENST00000681777.1:ENST00000681389.1:ENST00000679895.1:ENST00000680491.1:ENST00000679451.1:ENST00000679953.1:ENST00000461188.6:ENST00000680815.1:ENST00000680521.1:ENST00000681193.1:ENST00000681551.1:ENST00000679973.1:ENST00000680911.1:ENST00000679944.1:ENST00000681636.1:ENST00000680106.1:ENST00000494633.1:ENST00000680050.1:ENST00000681742.1:ENST00000680515.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	115	2	3.01549	3.5750349999999997	4.13458	1.79714e-4	6.18626e-5	0.0116696	0.00694613
chr1	205731650	205731749	623704	0	-	0.525253	(0.515,0.57]	chr1	74198	4	INTRON	INTRON	NUCKS1	ENSG00000069275.13	ENST00000367142.5	protein_coding	protein_coding	protein_coding	protein_coding	2	42	2	2.08547	3.57503	5.06459	0.0289426	6.03964e-4	0.1274	0.0223465
chr15	28299816	28299916	6123843	0	-	0.54	(0.515,0.57]	chr15	583406	3	SS3_PROX	SS3_PROX:INTRON	HERC2	ENSG00000128731.18	ENST00000261609.13:ENST00000564734.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	42	2	2.08547	3.57503	5.06459	0.0289426	6.03964e-4	0.1274	0.0223465
chr4	76950829	76950929	1976162	0	+	0.56	(0.515,0.57]	chr4	198131	5	INTRON	INTRON	SEPTIN11	ENSG00000138758.12	ENST00000502584.5:ENST00000264893.11:ENST00000510641.5:ENST00000505788.5:ENST00000512575.5:ENST00000510515.5:ENST00000504637.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	42	2	2.08547	3.57503	5.06459	0.0289426	6.03964e-4	0.1274	0.0223465
chr1	89867545	89867645	159991	0	+	0.36	(0.35,0.378]	chr1	17285	205	INTRON	INTRON	LRRC8D	ENSG00000171492.14	ENST00000525774.5:ENST00000337338.9:ENST00000394593.7:ENST00000532201.5:ENST00000414841.1:ENST00000527156.1:ENST00000441269.2	protein_coding	protein_coding	protein_coding	protein_coding	5	78	2	1.50939	3.5750249999999997	5.64066	0.0423993	1.14247e-4	0.148082	0.0091431
chr3	168090149	168090249	1854882	0	-	0.41	(0.408,0.44]	chr3	186419	414	INTRON	INTRON	GOLIM4	ENSG00000173905.9	ENST00000470487.6:ENST00000309027.4	protein_coding	protein_coding	protein_coding	protein_coding	2	48	2	1.74775	3.574915	5.40208	0.0735403	2.37882e-4	0.190238	0.0136195
chr10	15130766	15130866	4397688	0	+	0.38	(0.378,0.408]	chr10	406020	186	INTRON	INTRON	RPP38	ENSG00000152464.15	ENST00000451677.1	protein_coding	processed_transcript	protein_coding	processed_transcript	2	49	2	1.76032	3.5749	5.38948	0.0721577	2.85992e-4	0.187433	0.0150568
chr14	69382716	69382815	5916146	0	-	0.454545	(0.44,0.476]	chr14	562055	17	INTRON	INTRON	ERH	ENSG00000100632.11	ENST00000557016.6:ENST00000216520.6:ENST00000557697.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	48	2	2.29126	3.5747150000000003	4.85817	0.0165638	0.00223254	0.102621	0.0435144
chr1	71076294	71076394	482980	0	-	0.34	(0.32,0.35]	chr1	57873	1	SS5_PROX	SS5_PROX:INTRON	ZRANB2	ENSG00000132485.14	ENST00000370920.8:ENST00000254821.10:ENST00000611683.1	protein_coding	protein_coding	protein_coding	protein_coding	2	48	2	2.25173	3.574705	4.89768	0.0180122	0.00793135	0.114436	0.076155
chr18	49490120	49490190	6973154	0	-	0.4	(0.378,0.408]	chr18	689951	2	SS5_PROX	SS5_PROX:INTRON	RPL17-C18orf32:RPL17	ENSG00000215472.10:ENSG00000265681.8	ENST00000584895.5:ENST00000332968.11:ENST00000577910.1:ENST00000618619.4:ENST00000580261.6:ENST00000618613.5:ENST00000584364.5:ENST00000581373.5:ENST00000579248.5:ENST00000579408.5:ENST00000580210.5:ENST00000583637.5:ENST00000578532.5:ENST00000582588.1:ENST00000617346.4:ENST00000581091.1:ENST00000581741.1:ENST00000583036.5:ENST00000615760.4:ENST00000580387.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	70	2	1.91906	3.574585	5.23011	0.0153989	5.72873e-4	0.100621	0.0217398
chr3	81751105	81751204	1752064	0	-	0.414141	(0.408,0.44]	chr3	177695	76	INTRON	INTRON	GBE1	ENSG00000114480.13	ENST00000429644.7	protein_coding	protein_coding	protein_coding	protein_coding	2	45	2	1.85305	3.574585	5.29612	0.0543543	0.00113523	0.182243	0.0307488
chr6	2970367	2970465	3047721	0	-	0.418367	(0.408,0.44]	chr6	283599	17	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	SERPINB6	ENSG00000124570.21	ENST00000643098.1:ENST00000380546.7:ENST00000380539.7:ENST00000380529.5:ENST00000649845.1:ENST00000644178.1:ENST00000612421.3:ENST00000616722.4:ENST00000642543.1:ENST00000644388.1:ENST00000380520.6:ENST00000645580.1:ENST00000644693.1:ENST00000646775.1:ENST00000645421.1:ENST00000643227.1:ENST00000646688.1:ENST00000644777.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	45	2	1.85305	3.574585	5.29612	0.0543543	0.00113523	0.182243	0.0307488
chrX	74239251	74239351	7841065	0	-	0.41	(0.408,0.44]	chrX	799709	63	INTRON	INTRON	FTX	ENSG00000230590.12	ENST00000603672.5:ENST00000430772.6:ENST00000602776.6:ENST00000638681.1:ENST00000652319.1:ENST00000661133.1:ENST00000652071.1:ENST00000602812.6:ENST00000651703.1:ENST00000653018.1:ENST00000658448.1:ENST00000662240.1:ENST00000652527.1:ENST00000651451.1:ENST00000657611.1:ENST00000660481.1:ENST00000659574.1:ENST00000661084.1:ENST00000662494.1:ENST00000670936.1:ENST00000602420.6:ENST00000658203.1:ENST00000638985.1:ENST00000691187.1:ENST00000603037.2:ENST00000641360.1:ENST00000687056.1:ENST00000654870.2:ENST00000652540.1:ENST00000652331.2:ENST00000652013.1:ENST00000669263.1:ENST00000657070.1:ENST00000665069.1:ENST00000651936.1:ENST00000652496.1:ENST00000653874.2:ENST00000661335.1:ENST00000664123.1:ENST00000658439.1:ENST00000666535.1:ENST00000652970.1:ENST00000423992.3:ENST00000665313.2:ENST00000651140.1:ENST00000660100.1:ENST00000693483.1	lncRNA	lncRNA	lncRNA	lncRNA	2	45	2	1.85305	3.574585	5.29612	0.0543543	0.00113523	0.182243	0.0307488
chr11	65458851	65458950	4806040	0	+	0.454545	(0.44,0.476]	chr11	446565	21	INTRON	INTRON	ENSG00000173727	ENSG00000173727.13	ENST00000309775.8	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	4	66	2	1.79873	3.574525	5.35032	0.0223888	3.02713e-4	0.116918	0.0155054
chr1	114752240	114752336	528579	0	-	0.322917	(0.32,0.35]	chr1	62355	17	INTRON	INTRON	CSDE1	ENSG00000009307.17	ENST00000339438.10:ENST00000610726.5:ENST00000692719.1:ENST00000358528.9:ENST00000688211.1:ENST00000438362.7:ENST00000689217.1:ENST00000689989.1:ENST00000686025.1:ENST00000686781.1:ENST00000686123.1:ENST00000684913.1:ENST00000686235.1:ENST00000693467.1:ENST00000689732.1:ENST00000693644.1:ENST00000687759.1:ENST00000692044.1:ENST00000689885.1:ENST00000691403.1:ENST00000692629.1:ENST00000690013.1:ENST00000690420.1:ENST00000692950.1:ENST00000686667.1:ENST00000691032.1:ENST00000685676.1:ENST00000529046.6:ENST00000692672.1:ENST00000691377.1:ENST00000688611.1:ENST00000690207.1:ENST00000693311.1:ENST00000689510.1:ENST00000686581.1:ENST00000689727.1:ENST00000690784.1:ENST00000483030.2:ENST00000687548.1:ENST00000261443.9:ENST00000530886.5:ENST00000369530.5:ENST00000534699.5:ENST00000524652.2:ENST00000525132.1:ENST00000525878.5:ENST00000525970.5:ENST00000533818.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	48	2	2.01768	3.5744550000000004	5.13123	0.0361337	0.00394704	0.152563	0.0548259
chr11	63694162	63694262	4800040	0	+	0.39	(0.378,0.408]	chr11	444936	120	INTRON	INTRON	RTN3	ENSG00000133318.14	ENST00000341307.6:ENST00000356000.7:ENST00000542238.5:ENST00000538995.1:ENST00000339997.8:ENST00000540798.5:ENST00000537981.5:ENST00000377819.10:ENST00000536011.5:ENST00000543123.1:ENST00000543552.5:ENST00000545432.5:ENST00000338850.5:ENST00000354497.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	46	2	2.56408	3.5741750000000003	4.58427	0.0128325	0.00566993	0.0926667	0.0678837
chr17	29432773	29432873	6586060	0	+	0.4	(0.378,0.408]	chr17	640377	288	INTRON	INTRON	TAOK1	ENSG00000160551.12	ENST00000261716.8:ENST00000583121.5:ENST00000587277.1:ENST00000536202.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	46	2	2.56408	3.5741750000000003	4.58427	0.0128325	0.00566993	0.0926667	0.0678837
chr13	24463331	24463431	5562740	0	-	0.34	(0.32,0.35]	chr13	531592	28	INTRON	INTRON	PARP4	ENSG00000102699.6	ENST00000381989.4	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	2.78073	3.57414	4.36755	0.0300552	0.01481	0.129138	0.106702
chr16	58525580	58525673	6495273	0	-	0.333333	(0.32,0.35]	chr16	628394	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CNOT1	ENSG00000125107.19	ENST00000317147.10:ENST00000563130.5:ENST00000569240.5:ENST00000567188.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	36	2	2.78073	3.57414	4.36755	0.0300552	0.01481	0.129138	0.106702
chr3	32762963	32763063	1393910	0	+	0.34	(0.32,0.35]	chr3	145941	1	SS5_PROX	SS5_PROX:INTRON	CNOT10	ENSG00000182973.20	ENST00000331889.10:ENST00000328834.10:ENST00000435630.5:ENST00000454516.7:ENST00000416457.5:ENST00000430408.1:ENST00000471003.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	36	2	2.78073	3.57414	4.36755	0.0300552	0.01481	0.129138	0.106702
chr5	36902078	36902178	2338683	0	+	0.34	(0.32,0.35]	chr5	225949	157	INTRON	INTRON	NIPBL	ENSG00000164190.19	ENST00000282516.13:ENST00000448238.2:ENST00000652901.1	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	2.78073	3.57414	4.36755	0.0300552	0.01481	0.129138	0.106702
chr5	126877484	126877584	2713021	0	-	0.35	(0.32,0.35]	chr5	255246	63	INTRON	INTRON	MARCHF3	ENSG00000173926.6	ENST00000308660.6:ENST00000506088.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	36	2	2.78073	3.57414	4.36755	0.0300552	0.01481	0.129138	0.106702
chr1	52864157	52864257	105124	0	+	0.37	(0.35,0.378]	chr1	13744	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ZYG11A	ENSG00000203995.10	ENST00000371532.5:ENST00000612017.4:ENST00000371528.2	protein_coding	protein_coding	protein_coding	protein_coding	1	37	2	2.32443	3.5740999999999996	4.82377	0.0544216	0.00325499	0.164972	0.0524329
chr1	108879345	108879442	178936	0	+	0.371134	(0.35,0.378]	chr1	19487	12	INTRON	INTRON	GPSM2	ENSG00000121957.15	ENST00000406462.6:ENST00000675829.1:ENST00000441735.2:ENST00000642355.1:ENST00000435987.5:ENST00000645164.2:ENST00000675776.1:ENST00000264126.9:ENST00000676404.1:ENST00000674731.1:ENST00000674914.1:ENST00000674700.1:ENST00000643094.1:ENST00000675086.1:ENST00000676184.1:ENST00000675087.1:ENST00000675617.1:ENST00000435475.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	37	2	2.32443	3.5740999999999996	4.82377	0.0544216	0.00325499	0.164972	0.0524329
chr5	90759668	90759749	2422475	0	+	0.580247	(0.57,1]	chr5	233090	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	ADGRV1	ENSG00000164199.18	ENST00000405460.9:ENST00000639431.1:ENST00000640374.1:ENST00000509621.1:ENST00000640464.1:ENST00000425867.3:ENST00000639884.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	48	2	2.01786	3.5740350000000003	5.13021	0.00313784	1.21664e-4	0.0514466	0.00992813
chr1	211299986	211300084	306113	0	+	0.357143	(0.35,0.378]	chr1	35296	39	INTRON	INTRON	RCOR3	ENSG00000117625.14	ENST00000367006.8:ENST00000419091.7:ENST00000452621.6:ENST00000528926.5:ENST00000367005.8:ENST00000534460.5:ENST00000529763.5:ENST00000485186.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	37	2	2.39939	3.573995	4.7486	0.0458078	0.00418965	0.149888	0.0591344
chr8	144204057	144204156	3880890	0	+	0.363636	(0.35,0.378]	chr8	356701	30	INTRON	INTRON	MROH1	ENSG00000179832.18	ENST00000326134.10:ENST00000532255.5:ENST00000423230.6:ENST00000534366.5:ENST00000527552.5:ENST00000528919.5:ENST00000527071.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	37	2	2.39939	3.573995	4.7486	0.0458078	0.00418965	0.149888	0.0591344
chrX	111745104	111745204	7702693	0	+	0.36	(0.35,0.378]	chrX	788359	2	SS5_PROX	SS5_PROX:INTRON	ALG13	ENSG00000101901.12	ENST00000394780.8:ENST00000251943.8:ENST00000610588.4:ENST00000621367.4:ENST00000624161.3:ENST00000636363.1:ENST00000495283.5:ENST00000623144.3:ENST00000470971.5:ENST00000623148.3:ENST00000436609.5:ENST00000461669.5:ENST00000474121.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	37	2	2.39939	3.573995	4.7486	0.0458078	0.00418965	0.149888	0.0591344
chr6	26199243	26199293	3071039	0	-	0.24	[0,0.28]	chr6	285446	1	UTR5	UTR5:EXON_MRNA	ENSG00000282988:H2AC7	ENSG00000282988.2:ENSG00000196866.3	ENST00000635641.1:ENST00000650491.1:ENST00000635200.1:ENST00000341023.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	17	632	2	2.87416	3.573865	4.27357	1.12224e-5	5.51002e-7	0.00248015	4.35916e-4
chr1	156925	157024	352877	0	-	0.40404	(0.378,0.408]	chr1	40813	7	INTRON	INTRON	ENSG00000241860	ENSG00000241860.7	ENST00000466557.6	lncRNA	lncRNA	lncRNA	lncRNA	2	45	2	1.97143	3.5738499999999997	5.17627	0.0398704	0.00208234	0.161534	0.0411801
chr5	10232025	10232124	2566970	0	-	0.555556	(0.515,0.57]	chr5	246028	40	INTRON	INTRON	ATPSCKMT	ENSG00000150756.14	ENST00000511437.6:ENST00000280330.12:ENST00000510047.5:ENST00000504390.5:ENST00000510052.5:ENST00000506108.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	102	2	2.69048	3.573845	4.45721	8.78655e-4	5.69244e-6	0.0269932	0.00177762
chr2	108773645	108773744	847975	0	+	0.555556	(0.515,0.57]	chr2	94899	2	INTRON	INTRON	RANBP2	ENSG00000153201.16	ENST00000283195.11	protein_coding	protein_coding	protein_coding	protein_coding	3	83	2	3.20141	3.5737449999999997	3.94608	2.65803e-4	1.08342e-4	0.0144243	0.00933805
chr12	104458728	104458828	5210701	0	+	0.47	(0.44,0.476]	chr12	493315	8	INTRON	INTRON	CHST11	ENSG00000171310.11	ENST00000303694.6:ENST00000547956.1:ENST00000549260.5:ENST00000546689.1	protein_coding	protein_coding	protein_coding	protein_coding	5	155	2	3.03582	3.57364	4.11146	2.42052e-4	1.20584e-6	0.0143235	6.38771e-4
chr3	19953851	19953951	1376103	0	+	0.32	(0.28,0.32]	chr3	145051	6	INTRON	INTRON	RAB5A	ENSG00000144566.11	ENST00000273047.9:ENST00000412966.5:ENST00000446547.5:ENST00000422242.1:ENST00000469122.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	63	2	2.21798	3.573635	4.92929	0.0098607	0.00901091	0.0851009	0.0838128
chr3	183979151	183979249	1882224	0	-	0.530612	(0.515,0.57]	chr3	188174	1	INTRON	INTRON	ABCC5	ENSG00000114770.17	ENST00000334444.11:ENST00000265586.10:ENST00000437205.5:ENST00000492216.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	48	2	1.81744	3.573505	5.32957	0.031028	4.06834e-4	0.143457	0.0185763
chr15	27112792	27112892	5983571	0	+	0.42	(0.408,0.44]	chr15	569164	856	INTRON	INTRON	GABRG3	ENSG00000182256.13	ENST00000615808.5:ENST00000555083.5	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	3.02513	3.5735	4.12187	0.0354689	0.0059965	0.137535	0.0700606
chr3	141971319	141971415	1833647	0	-	0.416667	(0.408,0.44]	chr3	184292	8	INTRON	INTRON	TFDP2	ENSG00000114126.18	ENST00000489671.6:ENST00000499676.5:ENST00000486111.5:ENST00000477292.5:ENST00000495310.5:ENST00000467072.5:ENST00000487734.5:ENST00000479040.5:ENST00000467667.5:ENST00000478006.5:ENST00000497579.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	34	2	3.02513	3.5735	4.12187	0.0354689	0.0059965	0.137535	0.0700606
chr9	34217514	34217614	4111655	0	+	0.43	(0.408,0.44]	chr9	374720	258	INTRON	INTRON	UBAP1	ENSG00000165006.14	ENST00000625521.2:ENST00000379186.8:ENST00000297661.9:ENST00000626262.2	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	3.02513	3.5735	4.12187	0.0354689	0.0059965	0.137535	0.0700606
chr1	55118006	55118105	464879	0	-	0.333333	(0.32,0.35]	chr1	56085	74	INTRON	INTRON	USP24	ENSG00000162402.14	ENST00000294383.7	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	2.31405	3.57346	4.83287	0.0517107	0.0095071	0.176696	0.0817766
chr1	179128351	179128450	592060	0	-	0.323232	(0.32,0.35]	chr1	71061	13	INTRON	INTRON	ABL2	ENSG00000143322.21	ENST00000502732.6:ENST00000344730.7:ENST00000512653.5:ENST00000367623.8:ENST00000507173.5:ENST00000511413.5:ENST00000504405.5:ENST00000668691.1:ENST00000392043.4:ENST00000509520.5:ENST00000504324.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	36	2	2.31405	3.57346	4.83287	0.0517107	0.0095071	0.176696	0.0817766
chr10	112560527	112560627	4523545	0	+	0.35	(0.32,0.35]	chr10	417318	218	INTRON	INTRON	VTI1A	ENSG00000151532.14	ENST00000393077.3:ENST00000432306.5	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	2.31405	3.57346	4.83287	0.0517107	0.0095071	0.176696	0.0817766
chr11	74753776	74753876	4829207	0	+	0.35	(0.32,0.35]	chr11	450625	40	INTRON	INTRON	RNF169	ENSG00000166439.6	ENST00000299563.5	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	2.31405	3.57346	4.83287	0.0517107	0.0095071	0.176696	0.0817766
chr17	59128895	59128994	6802135	0	-	0.333333	(0.32,0.35]	chr17	671849	41	INTRON	INTRON	SKA2	ENSG00000182628.13	ENST00000330137.12:ENST00000580541.1:ENST00000578105.1:ENST00000578519.5:ENST00000583927.1:ENST00000581068.5:ENST00000437036.6:ENST00000583380.5:ENST00000583976.1:ENST00000584089.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	36	2	2.31405	3.57346	4.83287	0.0517107	0.0095071	0.176696	0.0817766
chr7	2190960	2191060	3466512	0	-	0.35	(0.32,0.35]	chr7	324058	157	INTRON	INTRON	MAD1L1	ENSG00000002822.16	ENST00000406869.5:ENST00000399654.6:ENST00000402746.5:ENST00000265854.12:ENST00000464742.5:ENST00000459731.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	36	2	2.31405	3.57346	4.83287	0.0517107	0.0095071	0.176696	0.0817766
chr10	7360425	7360525	4552428	0	-	0.34	(0.32,0.35]	chr10	420235	117	INTRON	INTRON	SFMBT2	ENSG00000198879.13	ENST00000397167.6:ENST00000361972.8:ENST00000684547.1:ENST00000683762.1:ENST00000673876.1:ENST00000682896.1:ENST00000379713.8:ENST00000682101.1:ENST00000379711.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	49	2	2.45306	3.57343	4.6938	0.0137794	0.00916394	0.0949306	0.0855292
chr12	122105559	122105659	5240130	0	+	0.56	(0.515,0.57]	chr12	497496	259	INTRON	INTRON	MLXIP	ENSG00000175727.14	ENST00000319080.12	protein_coding	protein_coding	protein_coding	protein_coding	2	42	2	2.15051	3.57343	4.99635	0.0238113	8.06602e-4	0.118889	0.0258804
chr1	183517920	183518020	273973	0	+	0.51	(0.476,0.515]	chr1	32054	1	SS5_PROX	SS5_PROX:INTRON	SMG7	ENSG00000116698.22	ENST00000440812.7:ENST00000367537.7:ENST00000688051.1:ENST00000685780.1:ENST00000508461.5:ENST00000347615.6:ENST00000419169.5:ENST00000444547.6:ENST00000507469.5:ENST00000515829.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	175	2	3.25181	3.573385	3.89496	1.31562e-5	9.98622e-6	0.00268963	0.00245866
chr1	246326395	246326495	678903	0	-	0.36	(0.35,0.378]	chr1	79746	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000453676.5:ENST00000462422.5:ENST00000403792.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	128	2	2.92197	3.573325	4.22468	5.30033e-4	2.51082e-5	0.0212515	0.00392664
chr12	120447029	120447129	5235285	0	+	0.38	(0.378,0.408]	chr12	496782	2	SS5_PROX	SS5_PROX:INTRON	GATC	ENSG00000257218.6	ENST00000551765.6:ENST00000548171.1:ENST00000229384.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	46	2	1.81685	3.573265	5.32968	0.0597868	0.00119786	0.189982	0.0315806
chr15	30690990	30691090	5992933	0	+	0.39	(0.378,0.408]	chr15	569773	55	INTRON	INTRON	ENSG00000284906:ENSG00000285035:ENSG00000187951	ENSG00000284906.3:ENSG00000285035.2:ENSG00000187951.11	ENST00000685924.1:ENST00000566548.5:ENST00000602616.6:ENST00000562954.1	protein_coding	protein_coding	protein_coding:lncRNA:transcribed_unprocessed_pseudogene	protein_coding:lncRNA:processed_transcript	2	46	2	1.81685	3.573265	5.32968	0.0597868	0.00119786	0.189982	0.0315806
chr2	47160280	47160379	1114720	0	-	0.353535	(0.35,0.378]	chr2	119536	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	CALM2	ENSG00000143933.20	ENST00000272298.12:ENST00000652974.1:ENST00000460218.5:ENST00000655450.1:ENST00000432899.5:ENST00000456319.6:ENST00000656538.1:ENST00000668667.1:ENST00000670593.1:ENST00000655728.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	20	561	2	2.81358	3.573185	4.33279	2.8373e-6	1.31282e-8	0.00107692	3.48336e-5
chr7	129036756	129036856	3636399	0	-	0.24	[0,0.28]	chr7	338142	182	INTRON	INTRON	TNPO3	ENSG00000064419.14	ENST00000627585.2:ENST00000265388.10:ENST00000471234.5:ENST00000482320.5:ENST00000471166.1	protein_coding	protein_coding	protein_coding	protein_coding	2	55	2	2.20073	3.57317	4.94561	0.0235708	0.0150263	0.128907	0.0994339
chr1	109371188	109371288	520752	0	-	0.48	(0.476,0.515]	chr1	61195	12	INTRON	INTRON	SORT1	ENSG00000134243.12	ENST00000538502.5:ENST00000256637.8:ENST00000493736.5:ENST00000482236.5:ENST00000633956.1:ENST00000471996.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	177	2	3.47964	3.573015	3.66639	3.7744e-5	2.7804e-6	0.00523787	0.00107208
chr11	74884077	74884177	4988551	0	-	0.45	(0.44,0.476]	chr11	471326	201	INTRON	INTRON	XRRA1	ENSG00000166435.16	ENST00000530562.5:ENST00000340360.10:ENST00000321448.12:ENST00000684022.1:ENST00000531849.5:ENST00000527087.5:ENST00000531449.5:ENST00000529926.1:ENST00000528819.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	47	2	1.9039	3.573005	5.24211	0.0501498	4.87398e-4	0.156383	0.0199652
chr3	136506571	136506671	1825991	0	-	0.45	(0.44,0.476]	chr3	183688	34	INTRON	INTRON	STAG1	ENSG00000118007.13	ENST00000383202.7:ENST00000236698.9:ENST00000434713.6:ENST00000483235.5:ENST00000629124.2:ENST00000487065.5:ENST00000462818.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	47	2	1.9039	3.573005	5.24211	0.0501498	4.87398e-4	0.156383	0.0199652
chr22	12608329	12608428	7472699	0	+	0.434343	(0.408,0.44]	chr22	761880	32	INTRON	INTRON	FRG1GP	ENSG00000283023.1	ENST00000634617.1	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	2	44	2	2.39162	3.5728	4.75398	0.0105837	0.00703931	0.0911864	0.0718189
chr5	109373026	109373126	2701997	0	-	0.42	(0.408,0.44]	chr5	254340	39	INTRON	INTRON	PJA2	ENSG00000198961.10	ENST00000361557.4:ENST00000361189.7	protein_coding	protein_coding	protein_coding	protein_coding	2	44	2	2.39162	3.5728	4.75398	0.0105837	0.00703931	0.0911864	0.0718189
chr9	33966379	33966478	4245009	0	-	0.424242	(0.408,0.44]	chr9	390437	22	INTRON	INTRON	UBAP2	ENSG00000137073.24	ENST00000379238.7:ENST00000683659.1:ENST00000682239.1:ENST00000683140.1:ENST00000682209.1:ENST00000681980.1:ENST00000360802.6:ENST00000683252.1:ENST00000684158.1:ENST00000682914.1:ENST00000683717.1:ENST00000379239.9:ENST00000683084.1:ENST00000684754.1:ENST00000629575.2:ENST00000684298.1:ENST00000412543.6:ENST00000421278.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	44	2	2.39162	3.5728	4.75398	0.0105837	0.00703931	0.0911864	0.0718189
chrX	11362984	11363084	7760984	0	-	0.33	(0.32,0.35]	chrX	793522	272	INTRON	INTRON	ARHGAP6	ENSG00000047648.23	ENST00000380736.5:ENST00000337414.9:ENST00000495242.5:ENST00000489330.6:ENST00000380718.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	49	2	1.81328	3.57273	5.33218	0.0615716	0.00204346	0.193423	0.04086
chr13	19133369	19133468	5451886	0	+	0.434343	(0.408,0.44]	chr13	522321	14	INTRON	INTRON	CENPIP1	ENSG00000224778.1	ENST00000425713.1	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	2	49	2	2.36185	3.5726649999999998	4.78348	0.0133164	0.00290352	0.094512	0.0494641
chr20	37229571	37229670	7266648	0	+	0.424242	(0.408,0.44]	chr20	738458	2	SS3_PROX	SS3_PROX:INTRON	RPN2	ENSG00000118705.17	ENST00000373622.9:ENST00000237530.11:ENST00000437329.5:ENST00000456400.1	protein_coding	protein_coding	protein_coding	protein_coding	2	49	2	2.36185	3.5726649999999998	4.78348	0.0133164	0.00290352	0.094512	0.0494641
chr19	1952239	1952338	6995858	0	+	0.555556	(0.515,0.57]	chr19	693358	93	INTRON	INTRON	CSNK1G2	ENSG00000133275.16	ENST00000255641.13:ENST00000591752.5	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	2.83188	3.57257	4.31326	0.0141817	0.0108207	0.0959618	0.0920575
chr19	17183228	17183328	7029038	0	+	0.55	(0.515,0.57]	chr19	699670	18	INTRON	INTRON	MYO9B	ENSG00000099331.14	ENST00000682292.1:ENST00000595618.5:ENST00000594824.5:ENST00000397274.6:ENST00000595641.5:ENST00000594971.5:ENST00000598101.1:ENST00000602177.1:ENST00000601749.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	30	2	2.83188	3.57257	4.31326	0.0141817	0.0108207	0.0959618	0.0920575
chr20	49833040	49833140	7285027	0	+	0.53	(0.515,0.57]	chr20	741093	95	INTRON	INTRON	SLC9A8	ENSG00000197818.12	ENST00000417961.5:ENST00000361573.3	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	2.83188	3.57257	4.31326	0.0141817	0.0108207	0.0959618	0.0920575
chr6	157482414	157482514	3012555	0	+	0.54	(0.515,0.57]	chr6	281268	998	INTRON	INTRON	ZDHHC14	ENSG00000175048.17	ENST00000414563.6:ENST00000359775.10	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	2.83188	3.57257	4.31326	0.0141817	0.0108207	0.0959618	0.0920575
chrX	14894140	14894235	7623908	0	+	0.515789	(0.515,0.57]	chrX	780577	9	INTRON	INTRON	MOSPD2	ENSG00000130150.12	ENST00000380492.8:ENST00000482354.5:ENST00000495110.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	30	2	2.83188	3.57257	4.31326	0.0141817	0.0108207	0.0959618	0.0920575
chrX	74003372	74003471	7682695	0	+	0.525253	(0.515,0.57]	chrX	786653	25	INTRON	INTRON	JPX	ENSG00000225470.8	ENST00000664637.1:ENST00000639185.1:ENST00000655090.1:ENST00000640437.1:ENST00000660546.1:ENST00000667886.1:ENST00000660840.1:ENST00000657179.1:ENST00000670506.1:ENST00000667573.1:ENST00000660856.1:ENST00000660836.1:ENST00000668590.1:ENST00000602772.5:ENST00000657372.1:ENST00000657096.1:ENST00000602985.6:ENST00000670685.1:ENST00000654374.1:ENST00000660087.1:ENST00000664295.1:ENST00000654005.1:ENST00000669149.1:ENST00000659852.1:ENST00000656509.1:ENST00000602294.6:ENST00000667294.1:ENST00000663470.1:ENST00000602920.6:ENST00000671021.1:ENST00000653929.1:ENST00000671518.1:ENST00000670408.1:ENST00000668488.1:ENST00000666318.1	lncRNA	lncRNA	lncRNA	lncRNA	1	30	2	2.83188	3.57257	4.31326	0.0141817	0.0108207	0.0959618	0.0920575
chr7	137978968	137979068	3655510	0	-	0.39	(0.378,0.408]	chr7	339370	452	INTRON	INTRON	CREB3L2	ENSG00000182158.16	ENST00000330387.11:ENST00000456390.5:ENST00000452463.5	protein_coding	protein_coding	protein_coding	protein_coding	3	54	2	2.14029	3.5724400000000003	5.00459	0.0106742	0.00371142	0.0917199	0.0535094
chr12	131942383	131942483	5250140	0	+	0.49	(0.476,0.515]	chr12	499272	4	SS5_PROX	SS5_PROX:INTRON	PUS1	ENSG00000177192.14	ENST00000443358.6:ENST00000376649.8:ENST00000542167.2:ENST00000535067.5:ENST00000543754.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	44	2	1.99341	3.57242	5.15143	0.037389	0.00166579	0.155878	0.0369207
chr3	6492638	6492738	1356164	0	+	0.43	(0.408,0.44]	chr3	142500	13	INTRON	INTRON	ENSG00000189229	ENSG00000189229.12	ENST00000660158.1:ENST00000433639.1:ENST00000655754.1:ENST00000653839.1:ENST00000662846.1:ENST00000659876.1:ENST00000414438.2:ENST00000658468.1:ENST00000414603.1	lncRNA	lncRNA	lncRNA	lncRNA	5	132	2	2.8501	3.5721800000000004	4.29426	1.55358e-4	2.77498e-5	0.0106835	0.00432528
chr15	70048654	70048750	6214989	0	-	0.4375	(0.408,0.44]	chr15	593038	10	UTR3	UTR3:EXON_MRNA	TLE3	ENSG00000140332.18	ENST00000558939.5:ENST00000451782.7:ENST00000317509.12	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	2.36073	3.572105	4.78348	0.0481658	0.00290352	0.153019	0.0494641
chr2	25821120	25821220	1084962	0	-	0.44	(0.408,0.44]	chr2	115942	144	INTRON	INTRON	ASXL2	ENSG00000143970.18	ENST00000435504.9:ENST00000336112.9:ENST00000497092.1	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	2.36073	3.572105	4.78348	0.0481658	0.00290352	0.153019	0.0494641
chr3	185659008	185659107	1884675	0	-	0.414141	(0.408,0.44]	chr3	188520	2	INTRON	INTRON	IGF2BP2	ENSG00000073792.16	ENST00000382199.7:ENST00000346192.7:ENST00000457616.6:ENST00000421047.3:ENST00000494906.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	35	2	2.36073	3.572105	4.78348	0.0481658	0.00290352	0.153019	0.0494641
chr12	104472220	104472320	5210836	0	+	0.53	(0.515,0.57]	chr12	493315	143	INTRON	INTRON	CHST11	ENSG00000171310.11	ENST00000303694.6:ENST00000547956.1:ENST00000549260.5:ENST00000546689.1	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	2.46104	3.57207	4.6831	0.032841	0.00471288	0.145164	0.0600108
chr15	37017532	37017632	6143230	0	-	0.52	(0.515,0.57]	chr15	584824	668	INTRON	INTRON	MEIS2	ENSG00000134138.20	ENST00000338564.9:ENST00000561208.6:ENST00000397624.7:ENST00000340545.9:ENST00000314177.12:ENST00000560570.5:ENST00000559085.5:ENST00000557796.6:ENST00000397620.6:ENST00000424352.6:ENST00000559561.5:ENST00000607277.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	30	2	2.46104	3.57207	4.6831	0.032841	0.00471288	0.145164	0.0600108
chr1	93218852	93218952	163571	0	+	0.44	(0.408,0.44]	chr1	17740	2	SS5_PROX	SS5_PROX:INTRON	CCDC18	ENSG00000122483.18	ENST00000343253.11:ENST00000401026.7:ENST00000690592.1:ENST00000370276.6:ENST00000690025.1:ENST00000692873.1:ENST00000455267.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	35	2	2.43988	3.5719900000000004	4.7041	0.0398236	0.00381677	0.143072	0.0562562
chr15	51086860	51086960	6024643	0	+	0.42	(0.408,0.44]	chr15	574193	488	INTRON	INTRON	MIR4713HG	ENSG00000259240.1	ENST00000559909.1	lncRNA	lncRNA	lncRNA	lncRNA	1	35	2	2.43988	3.5719900000000004	4.7041	0.0398236	0.00381677	0.143072	0.0562562
chr2	86442894	86442994	822946	0	+	0.41	(0.408,0.44]	chr2	91896	3	SS5_PROX	SS5_PROX:INTRON	KDM3A	ENSG00000115548.17	ENST00000452034.5:ENST00000409556.5:ENST00000312912.10:ENST00000441719.5:ENST00000409064.5:ENST00000427678.1:ENST00000498528.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	35	2	2.43988	3.5719900000000004	4.7041	0.0398236	0.00381677	0.143072	0.0562562
chr8	140693710	140693810	4076944	0	-	0.43	(0.408,0.44]	chr8	370348	62	INTRON	INTRON	PTK2	ENSG00000169398.20	ENST00000696786.1:ENST00000522684.5:ENST00000395218.3:ENST00000519654.5:ENST00000521059.5:ENST00000517887.5:ENST00000519465.5:ENST00000519993.5:ENST00000340930.7:ENST00000523539.5:ENST00000519419.5:ENST00000524202.5:ENST00000430260.6:ENST00000521986.5:ENST00000521985.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	35	2	2.43988	3.5719900000000004	4.7041	0.0398236	0.00381677	0.143072	0.0562562
chr16	58590596	58590696	6495987	0	-	0.47	(0.44,0.476]	chr16	628630	13	INTRON	INTRON	CNOT1	ENSG00000125107.19	ENST00000317147.10:ENST00000569240.5:ENST00000567188.5:ENST00000441024.6:ENST00000565605.5:ENST00000564557.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	68	2	1.892	3.5718949999999996	5.25179	0.00935701	0.00124521	0.0858596	0.0322969
chr11	70271587	70271672	4820417	0	+	0.517647	(0.515,0.57]	chr11	449373	3	SS5_PROX	SS5_PROX:INTRON	PPFIA1	ENSG00000131626.19	ENST00000253925.12:ENST00000389547.7:ENST00000532504.5:ENST00000530746.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	31	2	3.05839	3.571885	4.08538	0.0253843	0.00485936	0.12011	0.0640618
chr12	111595749	111595849	5413197	0	-	0.52	(0.515,0.57]	chr12	516941	310	INTRON	INTRON	ATXN2	ENSG00000204842.18	ENST00000642389.2:ENST00000608853.5:ENST00000672613.1:ENST00000673436.1:ENST00000643669.2:ENST00000616825.4:ENST00000389153.10:ENST00000550104.5:ENST00000483311.6:ENST00000672335.1:ENST00000673557.1:ENST00000673283.1:ENST00000673449.1:ENST00000535949.5:ENST00000542287.6:ENST00000644883.1:ENST00000647305.1:ENST00000671792.1:ENST00000392645.6:ENST00000672105.1:ENST00000549455.1:ENST00000548492.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	31	2	3.05839	3.571885	4.08538	0.0253843	0.00485936	0.12011	0.0640618
chr1	172606857	172606956	255453	0	+	0.383838	(0.378,0.408]	chr1	30475	37	INTRON	INTRON	SUCO	ENSG00000094975.14	ENST00000367723.8:ENST00000608151.5:ENST00000616058.4:ENST00000263688.4:ENST00000610051.5	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	2.2259	3.5718300000000003	4.91776	0.0662381	0.00196368	0.181924	0.0411469
chr18	2682613	2682713	6865134	0	+	0.38	(0.378,0.408]	chr18	679964	81	INTRON	INTRON	SMCHD1	ENSG00000101596.17	ENST00000320876.11:ENST00000688342.1:ENST00000684915.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	36	2	2.2259	3.5718300000000003	4.91776	0.0662381	0.00196368	0.181924	0.0411469
chr9	92382858	92382958	4155015	0	+	0.37	(0.35,0.378]	chr9	379002	26	INTRON	INTRON	CENPP	ENSG00000188312.14	ENST00000375587.8	protein_coding	protein_coding	protein_coding	protein_coding	2	80	2	3.41139	3.5718199999999998	3.73225	0.00143263	5.46487e-4	0.0347139	0.0215463
chr5	179771840	179771937	2561437	0	+	0.474227	(0.44,0.476]	chr5	244983	2	INTRON	INTRON	MAML1	ENSG00000161021.13	ENST00000292599.4:ENST00000507385.1:ENST00000511027.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	37	2	2.9195	3.571715	4.22393	0.0162322	0.0102021	0.109464	0.0850389
chr20	62134441	62134534	7297472	0	+	0.301075	(0.28,0.32]	chr20	742239	4	UTR3	UTR3:EXON_MRNA	LSM14B	ENSG00000149657.20	ENST00000279068.11	protein_coding	protein_coding	protein_coding	protein_coding	4	145	2	3.05447	3.5716900000000003	4.08891	2.20189e-4	1.67688e-4	0.0130241	0.0118991
chr7	2374245	2374339	3269833	0	+	0.361702	(0.35,0.378]	chr7	303855	13	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	EIF3B	ENSG00000106263.19	ENST00000360876.9:ENST00000397011.2:ENST00000475415.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	79	2	3.17244	3.57142	3.9704	0.00487788	1.01653e-4	0.0607461	0.00850967
chr18	12716034	12716133	6876040	0	+	0.40404	(0.378,0.408]	chr18	681236	29	INTRON	INTRON	PSMG2	ENSG00000128789.21	ENST00000585331.6:ENST00000586445.5:ENST00000590217.5:ENST00000586587.1:ENST00000317615.11	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	36	2	2.53503	3.57137	4.60771	0.0319942	0.00567576	0.13174	0.0678837
chr2	161379570	161379670	901829	0	+	0.35	(0.32,0.35]	chr2	99726	79	INTRON	INTRON	PSMD14	ENSG00000115233.12	ENST00000409682.8	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	3.07975	3.57137	4.06299	0.0559439	0.00554235	0.165463	0.0674105
chr21	43876844	43876944	7413906	0	+	0.4	(0.378,0.408]	chr21	755688	91	INTRON	INTRON	AGPAT3	ENSG00000160216.21	ENST00000291572.13:ENST00000448287.5	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	2.53503	3.57137	4.60771	0.0319942	0.00567576	0.13174	0.0678837
chr3	167683572	167683664	1853524	0	-	0.326087	(0.32,0.35]	chr3	186269	4	UTR3	UTR3:EXON_MRNA	PDCD10	ENSG00000114209.15	ENST00000392750.7	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	3.07975	3.57137	4.06299	0.0559439	0.00554235	0.165463	0.0674105
chr5	62359867	62359964	2362582	0	+	0.329897	(0.32,0.35]	chr5	227773	12	INTRON	INTRON	KIF2A	ENSG00000068796.19	ENST00000401507.7:ENST00000407818.8:ENST00000674632.1:ENST00000674916.1:ENST00000676413.1:ENST00000676122.1:ENST00000674751.1:ENST00000514082.6:ENST00000381103.7:ENST00000676271.1:ENST00000674733.1:ENST00000506857.5:ENST00000674752.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	38	2	3.07975	3.57137	4.06299	0.0559439	0.00554235	0.165463	0.0674105
chr7	65760956	65761056	3322839	0	+	0.35	(0.32,0.35]	chr7	308990	4	SS5_PROX	SS5_PROX:INTRON	CCT6P1	ENSG00000228409.7	ENST00000686363.1:ENST00000688735.1:ENST00000689814.1:ENST00000690196.1:ENST00000690636.1:ENST00000687809.1:ENST00000688944.1:ENST00000691983.1:ENST00000688184.1:ENST00000688478.1:ENST00000443108.7:ENST00000686689.1:ENST00000689785.1:ENST00000685316.1:ENST00000442266.3:ENST00000685398.1:ENST00000434500.6	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	1	38	2	3.07975	3.57137	4.06299	0.0559439	0.00554235	0.165463	0.0674105
chr17	82623792	82623892	6853437	0	-	0.5	(0.476,0.515]	chr17	679349	16	INTRON	INTRON	WDR45B	ENSG00000141580.16	ENST00000392325.9:ENST00000572583.5:ENST00000573656.5:ENST00000571835.5:ENST00000573616.5:ENST00000571767.5:ENST00000571817.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	62	2	2.10798	3.57132	5.03466	0.00628634	0.00252065	0.0722266	0.0446195
chr1	202530756	202530856	294612	0	+	0.39	(0.378,0.408]	chr1	33886	280	INTRON	INTRON	PPP1R12B	ENSG00000077157.22	ENST00000391959.5:ENST00000608999.6:ENST00000290419.9:ENST00000491336.5:ENST00000466273.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	34	2	2.92665	3.5711399999999998	4.21563	0.0315429	0.0086017	0.13151	0.083729
chr2	86482793	86482892	823367	0	+	0.393939	(0.378,0.408]	chr2	91992	2	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	KDM3A	ENSG00000115548.17	ENST00000409556.5:ENST00000312912.10:ENST00000441719.5:ENST00000409064.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	34	2	2.92665	3.5711399999999998	4.21563	0.0315429	0.0086017	0.13151	0.083729
chr4	2653421	2653521	1913694	0	+	0.4	(0.378,0.408]	chr4	192017	62	INTRON	INTRON	FAM193A	ENSG00000125386.16	ENST00000637812.2:ENST00000324666.9:ENST00000382839.7:ENST00000512465.5:ENST00000545951.5:ENST00000502458.5:ENST00000513898.5:ENST00000505311.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	34	2	2.92665	3.5711399999999998	4.21563	0.0315429	0.0086017	0.13151	0.083729
chrX	23784752	23784847	7630711	0	+	0.4	(0.378,0.408]	chrX	781422	1	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SAT1	ENSG00000130066.17	ENST00000379270.5:ENST00000379254.5:ENST00000489394.5:ENST00000474223.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	34	2	2.92665	3.5711399999999998	4.21563	0.0315429	0.0086017	0.13151	0.083729
chr11	13720478	13720575	4742842	0	+	0.226804	[0,0.28]	chr11	439211	7	UTR5	UTR5:EXON_MRNA:INTRON	FAR1	ENSG00000197601.13	ENST00000354817.8:ENST00000532502.1	protein_coding	protein_coding	protein_coding	protein_coding	2	59	2	2.5957	3.5709	4.5461	0.0365918	0.00656974	0.138959	0.0736092
chr1	65312836	65312935	136123	0	+	0.565657	(0.515,0.57]	chr1	15352	25	INTRON	INTRON	DNAJC6	ENSG00000116675.16	ENST00000463018.5:ENST00000494710.6:ENST00000263441.11:ENST00000395325.7:ENST00000483402.1:ENST00000371069.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	31	2	2.23241	3.5707649999999997	4.90912	0.0581268	0.0021669	0.188651	0.0417866
chr10	17706531	17706628	4399901	0	+	0.525773	(0.515,0.57]	chr10	406218	4	INTRON	INTRON	STAM	ENSG00000136738.15	ENST00000377524.8	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	2.23241	3.5707649999999997	4.90912	0.0581268	0.0021669	0.188651	0.0417866
chr10	32919684	32919784	4592304	0	-	0.34	(0.32,0.35]	chr10	423441	4	SS5_PROX	SS5_PROX:INTRON	ITGB1	ENSG00000150093.20	ENST00000609742.3:ENST00000678989.1:ENST00000677363.1:ENST00000302278.8:ENST00000396033.6:ENST00000423113.5:ENST00000417122.7:ENST00000676895.1:ENST00000678120.1:ENST00000676623.1:ENST00000678952.1:ENST00000677999.1:ENST00000679187.1:ENST00000678479.1:ENST00000676964.1:ENST00000488494.6:ENST00000488427.2:ENST00000678591.1:ENST00000678943.1:ENST00000437302.6:ENST00000678701.1:ENST00000678766.1:ENST00000676659.1:ENST00000677310.1:ENST00000474568.6:ENST00000676460.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	83	2	3.35116	3.570745	3.79033	0.00283808	2.87593e-4	0.0473151	0.0150609
chr12	111979087	111979187	5414221	0	-	0.37	(0.35,0.378]	chr12	517082	3	SS3_PROX	SS3_PROX:INTRON	TMEM116	ENSG00000198270.13	ENST00000550831.7:ENST00000552374.7:ENST00000355445.7:ENST00000547878.6:ENST00000549537.6:ENST00000552801.6:ENST00000548283.6:ENST00000550800.6:ENST00000550037.5:ENST00000551297.6:ENST00000550020.6:ENST00000546537.6:ENST00000549425.5:ENST00000552839.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	47	2	2.49643	3.5705	4.64457	0.012652	0.00752974	0.0926667	0.0773151
chr1	108320212	108320311	176839	0	+	0.313131	(0.28,0.32]	chr1	19165	56	INTRON	INTRON	SLC25A24P1	ENSG00000241361.8	ENST00000411846.6:ENST00000434803.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	1	41	2	2.45545	3.57036	4.68527	0.0438092	0.00819419	0.14901	0.0810802
chr5	72226513	72226606	2639849	0	-	0.311828	(0.28,0.32]	chr5	250910	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MRPS27	ENSG00000113048.18	ENST00000694990.1:ENST00000694989.1:ENST00000522042.2:ENST00000694988.1:ENST00000261413.10:ENST00000513900.6:ENST00000695403.1:ENST00000523654.6:ENST00000694998.1:ENST00000694997.1:ENST00000695298.1:ENST00000694996.1:ENST00000694995.1:ENST00000519143.6:ENST00000694994.1:ENST00000695297.1:ENST00000695296.1:ENST00000694993.1:ENST00000694992.1:ENST00000694991.1:ENST00000694999.1:ENST00000457646.9:ENST00000515226.5:ENST00000695404.1:ENST00000508863.6:ENST00000522562.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	41	2	2.45545	3.57036	4.68527	0.0438092	0.00819419	0.14901	0.0810802
chr5	131689244	131689344	2719656	0	-	0.3	(0.28,0.32]	chr5	255672	97	INTRON	INTRON	FNIP1	ENSG00000217128.13	ENST00000510461.6:ENST00000307954.12:ENST00000307968.11:ENST00000511848.1	protein_coding	protein_coding	protein_coding	protein_coding	1	41	2	2.45545	3.57036	4.68527	0.0438092	0.00819419	0.14901	0.0810802
chr7	131360046	131360146	3416764	0	+	0.3	(0.28,0.32]	chr7	319187	317	INTRON	INTRON	MKLN1	ENSG00000128585.18	ENST00000421797.6:ENST00000416992.6:ENST00000429546.5:ENST00000446815.5:ENST00000494286.5:ENST00000352689.11:ENST00000494785.5:ENST00000458153.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	41	2	2.45545	3.57036	4.68527	0.0438092	0.00819419	0.14901	0.0810802
chr11	67607616	67607716	4815479	0	+	0.61	(0.57,1]	chr11	448561	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	NDUFV1	ENSG00000167792.13	ENST00000647561.1:ENST00000532303.5:ENST00000532244.5:ENST00000528328.1:ENST00000322776.11:ENST00000529927.5:ENST00000415352.6:ENST00000532343.5:ENST00000524838.5:ENST00000524876.5:ENST00000528548.5:ENST00000529867.5:ENST00000533075.5:ENST00000534139.5:ENST00000525086.5:ENST00000530014.5:ENST00000530103.5:ENST00000532260.1:ENST00000530638.1:ENST00000526138.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	103	2	3.14233	3.5702749999999996	3.99822	4.99296e-5	5.99791e-8	0.00578948	1.00431e-4
chr4	94468066	94468166	1998544	0	+	0.37	(0.35,0.378]	chr4	199549	110	INTRON	INTRON	PDLIM5	ENSG00000163110.15	ENST00000437932.5:ENST00000615540.4:ENST00000318007.9:ENST00000380180.7:ENST00000514830.5:ENST00000509333.5:ENST00000503974.5:ENST00000317968.9:ENST00000627587.2:ENST00000542407.5:ENST00000514743.5:ENST00000508216.5:ENST00000511767.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	57	2	2.28182	3.57026	4.8587	0.00695662	0.00637232	0.0724821	0.0718189
chr4	458702	458802	2092766	0	-	0.62	(0.57,1]	chr4	206783	139	INTRON	INTRON	ABCA11P:ZNF721	ENSG00000251595.7:ENSG00000182903.16	ENST00000451020.6:ENST00000514396.5:ENST00000507854.1:ENST00000515578.5:ENST00000506646.5:ENST00000507078.1:ENST00000511833.3:ENST00000338977.5:ENST00000505900.1	protein_coding	protein_coding	protein_coding:transcribed_processed_pseudogene	protein_coding:nonsense_mediated_decay:processed_transcript	3	35	2	2.01216	3.570145	5.12813	0.0163389	8.62401e-5	0.101571	0.00783027
chr1	155663695	155663793	563057	0	-	0.295918	(0.28,0.32]	chr1	67145	19	INTRON	INTRON	YY1AP1	ENSG00000163374.20	ENST00000368339.9:ENST00000295566.8:ENST00000368330.6:ENST00000436865.5:ENST00000359205.9:ENST00000407221.5:ENST00000404643.5:ENST00000361140.8:ENST00000361831.9:ENST00000347088.9:ENST00000354691.9:ENST00000368340.9:ENST00000311573.9:ENST00000442834.6:ENST00000355499.9:ENST00000405763.7:ENST00000488784.5:ENST00000493625.5:ENST00000477470.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	51	2	2.33771	3.57013	4.80255	0.0142701	0.0137406	0.103838	0.0949306
chr5	145739473	145739572	2745676	0	-	0.323232	(0.32,0.35]	chr5	258674	348	INTRON	INTRON	PRELID2	ENSG00000186314.12	ENST00000510259.5:ENST00000510594.1:ENST00000515161.1	protein_coding	processed_transcript	protein_coding	processed_transcript	3	111	2	3.28616	3.5701	3.85404	3.75908e-4	2.51931e-4	0.0179813	0.0141209
chr11	86064755	86064855	5014800	0	-	0.45	(0.44,0.476]	chr11	473022	328	INTRON	INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000630913.2:ENST00000528398.5:ENST00000356360.9:ENST00000534412.5:ENST00000531558.1:ENST00000531930.5:ENST00000532041.5:ENST00000525162.5:ENST00000528256.1:ENST00000528411.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	98	2	3.50954	3.5700950000000002	3.63065	0.00116647	2.7933e-5	0.0312127	0.00417558
chr1	28499092	28499190	57152	0	+	0.408163	(0.378,0.408]	chr1	7374	27	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	PHACTR4	ENSG00000204138.13	ENST00000373839.8:ENST00000632964.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	34	2	2.26252	3.5700700000000003	4.87762	0.056222	0.00553849	0.18407	0.0648867
chr4	70707191	70707291	1969456	0	+	0.4	(0.378,0.408]	chr4	197439	15	INTRON	INTRON	RUFY3	ENSG00000018189.13	ENST00000503876.5:ENST00000417478.6	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	2.26252	3.5700700000000003	4.87762	0.056222	0.00553849	0.18407	0.0648867
chr16	89375926	89376026	6542444	0	-	0.45	(0.44,0.476]	chr16	634240	24	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000647238.1:ENST00000644045.1:ENST00000643147.1:ENST00000644139.1:ENST00000568512.6:ENST00000566973.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	214	2	2.62933	3.5700399999999997	4.51075	2.24471e-4	6.40303e-8	0.01376	1.09557e-4
chr18	164925	165022	6854890	0	+	0.42268	(0.408,0.44]	chr18	679502	11	INTRON	INTRON	USP14	ENSG00000101557.15	ENST00000582707.5:ENST00000400266.7:ENST00000261601.8:ENST00000578942.5:ENST00000383589.6:ENST00000583119.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	57	2	1.64062	3.56998	5.49934	0.0557275	1.5076e-4	0.165463	0.0106137
chr17	59704197	59704296	6802717	0	-	0.373737	(0.35,0.378]	chr17	671891	29	INTRON	INTRON	PTRH2	ENSG00000141378.15	ENST00000587935.1:ENST00000409433.2:ENST00000393038.3:ENST00000579915.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	37	2	2.47065	3.56997	4.66929	0.0386172	0.00541617	0.142656	0.066545000000000007
chr19	51589980	51590077	7093745	0	+	0.371134	(0.35,0.378]	chr19	711055	5	UTR3	UTR3:EXON_MRNA	ZNF175	ENSG00000105497.8	ENST00000262259.7	protein_coding	protein_coding	protein_coding	protein_coding	1	37	2	2.47065	3.56997	4.66929	0.0386172	0.00541617	0.142656	0.066545000000000007
chr2	15446939	15447039	1072004	0	-	0.2	[0,0.28]	chr2	114368	188	INTRON	INTRON	NBAS	ENSG00000151779.13	ENST00000281513.10	protein_coding	protein_coding	protein_coding	protein_coding	3	67	2	2.02929	3.5698100000000004	5.11033	0.0189138	0.00991388	0.118303	0.0838372
chr1	37588091	37588187	424505	0	-	0.354167	(0.35,0.378]	chr1	51365	2	INTRON	INTRON	GNL2	ENSG00000134697.13	ENST00000373062.8	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	3.05136	3.56976	4.08816	0.046021	0.00578894	0.149888	0.0684334
chr14	96526946	96527042	5810417	0	+	0.354167	(0.35,0.378]	chr14	550902	11	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	PAPOLA	ENSG00000090060.19	ENST00000554887.5:ENST00000618976.2:ENST00000216277.13:ENST00000553357.5:ENST00000553689.5:ENST00000557320.5:ENST00000554130.5:ENST00000557471.5:ENST00000556619.5:ENST00000392990.6:ENST00000555626.5:ENST00000557406.5:ENST00000555224.1:ENST00000555912.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	36	2	3.05136	3.56976	4.08816	0.046021	0.00578894	0.149888	0.0684334
chr2	32371714	32371814	730925	0	+	0.34	(0.32,0.35]	chr2	84274	139	INTRON	INTRON	BIRC6	ENSG00000115760.15	ENST00000421745.7:ENST00000648282.1	protein_coding	protein_coding	protein_coding	protein_coding	1	37	2	2.96746	3.569635	4.17181	0.04531	0.00815799	0.149888	0.0810802
chr5	32151771	32151870	2597290	0	-	0.323232	(0.32,0.35]	chr5	246744	75	INTRON	INTRON	GOLPH3	ENSG00000113384.14	ENST00000265070.7:ENST00000503610.5:ENST00000512668.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	37	2	2.96746	3.569635	4.17181	0.04531	0.00815799	0.149888	0.0810802
chr7	152065301	152065401	3449907	0	+	0.35	(0.32,0.35]	chr7	322435	372	INTRON	INTRON	GALNT11	ENSG00000178234.13	ENST00000430044.7:ENST00000482812.1:ENST00000431668.1:ENST00000446096.5:ENST00000447778.5:ENST00000423337.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	37	2	2.96746	3.569635	4.17181	0.04531	0.00815799	0.149888	0.0810802
chr7	17889590	17889686	3496049	0	-	0.302083	(0.28,0.32]	chr7	326479	10	EXON_MRNA	EXON_MRNA:INTRON	SNX13	ENSG00000071189.21	ENST00000428135.7:ENST00000611725.4:ENST00000409076.6:ENST00000444712.5:ENST00000482558.5:ENST00000409604.1:ENST00000492626.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	51	2	1.83771	3.5696199999999996	5.30153	0.0591725	0.00332518	0.189982	0.0512081
chr7	39639903	39640003	3309313	0	+	0.31	(0.28,0.32]	chr7	307358	151	INTRON	INTRON	RALA	ENSG00000006451.8	ENST00000468201.1:ENST00000005257.7:ENST00000436179.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	38	2	2.80157	3.56961	4.33765	0.039714	0.0147132	0.143072	0.106558
chr1	11965208	11965285	26309	0	+	0.441558	(0.44,0.476]	chr1	3021	4	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PLOD1	ENSG00000083444.17	ENST00000196061.5:ENST00000491536.5:ENST00000470133.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	97	2	3.05373	3.569585	4.08544	6.56725e-4	7.98065e-5	0.0232396	0.00801397
chr11	4056037	4056137	4725478	0	+	0.45	(0.44,0.476]	chr11	437182	4	SS5_PROX	SS5_PROX:INTRON	STIM1	ENSG00000167323.12	ENST00000525403.5:ENST00000526596.2:ENST00000300737.8:ENST00000616714.4:ENST00000527651.5:ENST00000532610.5:ENST00000532919.5:ENST00000528656.5:ENST00000526771.5:ENST00000527484.5:ENST00000533445.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	35	2	2.20949	3.569585	4.92968	0.0672585	0.00171443	0.183051	0.0381936
chr16	68175709	68175808	6371135	0	+	0.464646	(0.44,0.476]	chr16	612227	8	INTRON	INTRON	NFATC3	ENSG00000072736.19	ENST00000563319.5:ENST00000569766.5:ENST00000553077.5:ENST00000566301.5:ENST00000549350.5:ENST00000575270.5:ENST00000346183.8:ENST00000539828.6:ENST00000349223.9:ENST00000329524.8:ENST00000379165.8:ENST00000562926.5:ENST00000570212.5:ENST00000563796.5:ENST00000567152.5:ENST00000563288.5:ENST00000535127.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	35	2	2.20949	3.569585	4.92968	0.0672585	0.00171443	0.183051	0.0381936
chr4	2549951	2550051	1912649	0	+	0.46	(0.44,0.476]	chr4	191976	124	INTRON	INTRON	RNF4:FAM193A	ENSG00000063978.16:ENSG00000125386.16	ENST00000508235.1:ENST00000637812.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	35	2	2.20949	3.569585	4.92968	0.0672585	0.00171443	0.183051	0.0381936
chr6	2889663	2889762	3047333	0	-	0.333333	(0.32,0.35]	chr6	283507	25	UTR3	UTR3:EXON_MRNA	SERPINB9	ENSG00000170542.6	ENST00000380698.5	protein_coding	protein_coding	protein_coding	protein_coding	16	552	2	3.37903	3.569535	3.76004	3.10354e-7	3.01215e-7	2.98561e-4	2.78615e-4
chr17	28943206	28943305	6746147	0	-	0.424242	(0.408,0.44]	chr17	662925	151	INTRON	INTRON	PHF12	ENSG00000109118.14	ENST00000332830.9:ENST00000577226.5:ENST00000582436.5:ENST00000378879.7:ENST00000268756.7:ENST00000583524.5:ENST00000483934.5:ENST00000584685.1:ENST00000582853.5:ENST00000584236.1:ENST00000583747.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	60	2	1.6546400000000001	3.5694	5.48416	0.0329965	5.43528e-4	0.145298	0.0215026
chr1	6187316	6187414	366075	0	-	0.520408	(0.515,0.57]	chr1	43018	1	INTRON	INTRON	RPL22	ENSG00000116251.11	ENST00000234875.9:ENST00000480661.1:ENST00000497965.5:ENST00000471204.5:ENST00000465387.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	84	2	3.25212	3.56914	3.88616	2.5577e-4	1.07993e-4	0.0148225	0.00878438
chr21	10555208	10555307	7369574	0	+	0.525253	(0.515,0.57]	chr21	752100	21	INTRON	INTRON	ENSG00000273840	ENSG00000273840.1	ENST00000612267.1	lncRNA	lncRNA	lncRNA	lncRNA	2	40	2	2.03361	3.569045	5.10448	0.0325854	0.0010345	0.145164	0.029231300000000002
chr14	102794139	102794238	5824096	0	+	0.454545	(0.44,0.476]	chr14	552554	161	INTRON	INTRON	TRAF3	ENSG00000131323.16	ENST00000392745.8:ENST00000560371.5:ENST00000347662.8:ENST00000539721.5:ENST00000560463.5	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	2.60774	3.56904	4.53034	0.0255874	0.00672609	0.120269	0.0738715
chr16	53116014	53116114	6351330	0	+	0.45	(0.44,0.476]	chr16	609670	164	INTRON	INTRON	CHD9	ENSG00000177200.18	ENST00000447540.6:ENST00000566029.5:ENST00000615216.4:ENST00000561869.1:ENST00000565832.5:ENST00000564582.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	35	2	2.60774	3.56904	4.53034	0.0255874	0.00672609	0.120269	0.0738715
chr11	72708970	72709070	4978918	0	-	0.45	(0.44,0.476]	chr11	470506	12	INTRON	INTRON	ARAP1	ENSG00000186635.15	ENST00000359373.9:ENST00000393609.8:ENST00000465814.5:ENST00000334211.12:ENST00000393605.7:ENST00000426523.5:ENST00000429686.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	132	2	2.66103	3.5690150000000003	4.477	4.47456e-4	9.39947e-6	0.0191768	0.00236268
chr9	114339858	114339956	4320319	0	-	0.530612	(0.515,0.57]	chr9	397566	22	INTRON	INTRON	AKNA	ENSG00000106948.17	ENST00000307564.8:ENST00000374088.8:ENST00000374079.8:ENST00000492875.1:ENST00000374075.9:ENST00000223791.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	56	2	2.16051	3.5688649999999997	4.97722	0.0046825	0.00168681	0.0631419	0.0370386
chr18	169714	169814	6854939	0	+	0.35	(0.32,0.35]	chr18	679508	25	INTRON	INTRON	USP14	ENSG00000101557.15	ENST00000582707.5:ENST00000400266.7:ENST00000261601.8:ENST00000578942.5:ENST00000383589.6:ENST00000583119.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	48	2	2.30476	3.568815	4.83287	0.0151817	0.0095071	0.108535	0.0817766
chr7	117029190	117029290	3386749	0	+	0.34	(0.32,0.35]	chr7	317151	58	INTRON	INTRON	ST7:ST7-OT4	ENSG00000004866.22:ENSG00000214188.9	ENST00000393446.6:ENST00000265437.9:ENST00000393451.7:ENST00000438863.5:ENST00000393449.5:ENST00000443979.5:ENST00000323984.8:ENST00000417919.5:ENST00000446490.5:ENST00000471110.5:ENST00000422922.5:ENST00000432298.5:ENST00000449366.5:ENST00000487459.5:ENST00000393443.5:ENST00000467538.5:ENST00000434836.5:ENST00000465133.5:ENST00000477742.5:ENST00000462544.1:ENST00000393444.7:ENST00000393447.8	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:nonsense_mediated_decay:lncRNA:processed_transcript	2	48	2	2.30476	3.568815	4.83287	0.0151817	0.0095071	0.108535	0.0817766
chr1	46132242	46132338	442115	0	-	0.541667	(0.515,0.57]	chr1	53503	4	UTR5	UTR5:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PIK3R3	ENSG00000117461.15	ENST00000372006.5:ENST00000262741.10:ENST00000420542.5:ENST00000423209.5:ENST00000493202.1:ENST00000425892.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	55	2	1.56838	3.568725	5.56907	0.0424458	1.36543e-4	0.161763	0.0106702
chr5	32260034	32260133	2597862	0	-	0.383838	(0.378,0.408]	chr5	246812	39	INTRON	INTRON	MTMR12	ENSG00000150712.11	ENST00000280285.9:ENST00000382142.8:ENST00000264934.5	protein_coding	protein_coding	protein_coding	protein_coding	4	61	2	1.76	3.568695	5.37739	0.023484	0.0010014	0.128531	0.0288906
chr5	65580013	65580113	2368806	0	+	0.29	(0.28,0.32]	chr5	228263	4	SS5_PROX	SS5_PROX:INTRON	PPWD1	ENSG00000113593.12	ENST00000535264.5:ENST00000538977.5:ENST00000261308.10:ENST00000510930.5:ENST00000511908.5:ENST00000514172.1:ENST00000511334.1:ENST00000515151.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	121	2	3.17044	3.568495	3.96655	5.14622e-4	2.88499e-4	0.0203753	0.0156418
chr17	75890013	75890108	6838955	0	-	0.326316	(0.32,0.35]	chr17	676085	12	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	TRIM65	ENSG00000141569.12	ENST00000591668.5:ENST00000592642.1:ENST00000269383.8:ENST00000648382.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	48	2	1.95271	3.5684299999999998	5.18415	0.0431213	0.00333629	0.162255	0.0512081
chr10	42543757	42543857	4603765	0	-	0.36	(0.35,0.378]	chr10	424114	177	INTRON	INTRON	ZNF37BP	ENSG00000234420.8	ENST00000452075.7:ENST00000692055.1:ENST00000689225.1:ENST00000686311.1:ENST00000686673.1:ENST00000688789.1:ENST00000690905.1:ENST00000435805.7:ENST00000687308.1:ENST00000692559.1:ENST00000690442.1:ENST00000473592.1:ENST00000691808.1:ENST00000692594.1:ENST00000691366.1:ENST00000689409.1:ENST00000685241.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	1	39	2	2.83709	3.56835	4.29961	0.0158483	0.01435	0.109464	0.0966737
chr16	50289120	50289220	6348822	0	+	0.36	(0.35,0.378]	chr16	609402	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	ADCY7	ENSG00000121281.13	ENST00000564965.5:ENST00000564044.5:ENST00000394697.7:ENST00000673801.1:ENST00000566433.6:ENST00000563677.1:ENST00000566761.2:ENST00000673973.1:ENST00000537579.5:ENST00000254235.7:ENST00000567277.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	39	2	2.83709	3.56835	4.29961	0.0158483	0.01435	0.109464	0.0966737
chr2	44437892	44437992	766099	0	+	0.37	(0.35,0.378]	chr2	86775	369	INTRON	INTRON	CAMKMT	ENSG00000143919.15	ENST00000378494.8:ENST00000402247.5:ENST00000407131.5:ENST00000403853.7:ENST00000428993.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	39	2	2.83709	3.56835	4.29961	0.0158483	0.01435	0.109464	0.0966737
chr6	10904539	10904637	2811925	0	+	0.357143	(0.35,0.378]	chr6	264578	12	INTRON	INTRON	SYCP2L	ENSG00000153157.13	ENST00000341041.8:ENST00000283141.11:ENST00000543878.5:ENST00000487561.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	39	2	2.83709	3.56835	4.29961	0.0158483	0.01435	0.109464	0.0966737
chr15	55288449	55288549	6180893	0	-	0.45	(0.44,0.476]	chr15	589167	177	INTRON	INTRON	RAB27A	ENSG00000069974.16	ENST00000336787.6:ENST00000563262.5:ENST00000567639.1:ENST00000565776.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	128	2	3.41383	3.56829	3.72275	1.54313e-4	1.58448e-5	0.0113252	0.00300937
chr14	95534307	95534404	5965462	0	-	0.56701	(0.515,0.57]	chr14	566636	8	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	SNHG10	ENSG00000247092.8	ENST00000667310.2:ENST00000671157.2:ENST00000658932.2:ENST00000500370.2:ENST00000554169.2:ENST00000693219.1:ENST00000685307.1:ENST00000691619.1:ENST00000689247.1:ENST00000687146.1:ENST00000660378.2:ENST00000689758.1:ENST00000690868.1:ENST00000693520.1:ENST00000685703.1:ENST00000690961.1:ENST00000689823.1:ENST00000689442.1:ENST00000688138.1:ENST00000693718.1:ENST00000688462.1:ENST00000553559.1:ENST00000555866.5:ENST00000691606.1:ENST00000688965.1	lncRNA	lncRNA	lncRNA	lncRNA	8	148	2	2.28516	3.5681849999999997	4.85121	5.3489e-4	4.22407e-7	0.0209127	3.69804e-4
chr16	89812567	89812663	6544788	0	-	0.458333	(0.44,0.476]	chr16	634616	11	INTRON	INTRON	FANCA	ENSG00000187741.16	ENST00000561667.2:ENST00000389301.8:ENST00000568369.6:ENST00000564475.6:ENST00000696275.1:ENST00000696287.1:ENST00000696286.1:ENST00000696291.1:ENST00000696276.1:ENST00000567205.2:ENST00000567284.7:ENST00000696277.1:ENST00000696292.1:ENST00000563767.2:ENST00000567621.6:ENST00000696288.1:ENST00000696293.1:ENST00000566889.5:ENST00000389302.7:ENST00000696294.1:ENST00000696295.1:ENST00000563673.5:ENST00000543736.5:ENST00000534992.5:ENST00000565582.5:ENST00000696296.1:ENST00000563513.1:ENST00000567883.5:ENST00000567943.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	47	2	1.83899	3.56811	5.29723	0.0589734	3.83422e-4	0.167915	0.017699199999999998
chr2	70699566	70699665	1153627	0	-	0.474747	(0.44,0.476]	chr2	123272	28	INTRON	INTRON	ADD2	ENSG00000075340.23	ENST00000403045.6:ENST00000264436.9:ENST00000407644.6:ENST00000355733.7:ENST00000522886.5:ENST00000456320.7:ENST00000413157.6:ENST00000430656.5:ENST00000415348.5:ENST00000425976.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	36	2	2.80275	3.568105	4.33346	0.0146513	0.0120349	0.0982604	0.0962115
chr20	31560047	31560147	7253447	0	+	0.47	(0.44,0.476]	chr20	736664	4	SS5_PROX	SS5_PROX:INTRON	HM13	ENSG00000101294.18	ENST00000335574.10:ENST00000674240.1:ENST00000340852.9:ENST00000398174.9:ENST00000649820.1:ENST00000466766.2:ENST00000650367.1:ENST00000344042.5:ENST00000649374.1:ENST00000469126.5:ENST00000492709.5:ENST00000469097.5:ENST00000487964.5:ENST00000649583.1:ENST00000460389.5:ENST00000494153.5:ENST00000483310.5:ENST00000472128.5:ENST00000474466.5:ENST00000468559.5:ENST00000619859.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	36	2	2.80275	3.568105	4.33346	0.0146513	0.0120349	0.0982604	0.0962115
chr7	74184021	74184121	3332324	0	+	0.47	(0.44,0.476]	chr7	310036	1	SS5_PROX	SS5_PROX:INTRON	EIF4H	ENSG00000106682.16	ENST00000678438.1:ENST00000489484.5:ENST00000677998.1:ENST00000495187.2:ENST00000265753.13:ENST00000353999.6:ENST00000677570.1:ENST00000677681.1:ENST00000678815.1:ENST00000679266.1:ENST00000679287.1:ENST00000479338.5:ENST00000678341.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	36	2	2.80275	3.568105	4.33346	0.0146513	0.0120349	0.0982604	0.0962115
chr7	157225006	157225106	3454821	0	+	0.45	(0.44,0.476]	chr7	322991	2	SS3_PROX	SS3_PROX:INTRON	UBE3C	ENSG00000009335.18	ENST00000348165.10:ENST00000470408.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	36	2	2.80275	3.568105	4.33346	0.0146513	0.0120349	0.0982604	0.0962115
chr5	82196761	82196861	2404956	0	+	0.37	(0.35,0.378]	chr5	232146	178	INTRON	INTRON	ATG10	ENSG00000152348.16	ENST00000282185.8:ENST00000458350.7:ENST00000504770.5:ENST00000513634.1:ENST00000508814.5:ENST00000514253.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	34	2	2.57049	3.567995	4.5655	0.0262669	0.0155464	0.133676	0.100909
chr1	39165416	39165516	75492	0	+	0.44	(0.408,0.44]	chr1	9698	60	INTRON	INTRON	MACF1	ENSG00000127603.32	ENST00000361689.7:ENST00000689911.1:ENST00000567887.5:ENST00000372915.8:ENST00000472385.2:ENST00000693209.1:ENST00000524432.5:ENST00000467673.5:ENST00000688212.1:ENST00000672812.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	35	2	2.27698	3.56785	4.85872	0.0583528	0.00221911	0.167723	0.0435144
chr1	167267629	167267728	245320	0	+	0.424242	(0.408,0.44]	chr1	29261	94	INTRON	INTRON	POU2F1	ENSG00000143190.23	ENST00000559038.5:ENST00000367866.7:ENST00000557909.5:ENST00000271411.8:ENST00000429375.6:ENST00000560232.6:ENST00000442313.5:ENST00000367865.5:ENST00000492850.5:ENST00000541643.7:ENST00000648671.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	35	2	2.27698	3.56785	4.85872	0.0583528	0.00221911	0.167723	0.0435144
chr15	72725155	72725254	6060874	0	+	0.424242	(0.408,0.44]	chr15	577010	1	INTRON	INTRON	BBS4	ENSG00000140463.14	ENST00000395205.6:ENST00000566400.5:ENST00000565160.5:ENST00000561914.5:ENST00000268057.9:ENST00000567279.5:ENST00000562084.5:ENST00000569338.5:ENST00000562219.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	35	2	2.27698	3.56785	4.85872	0.0583528	0.00221911	0.167723	0.0435144
chr2	23799993	23800093	1079657	0	-	0.32	(0.28,0.32]	chr2	115234	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	ATAD2B	ENSG00000119778.15	ENST00000238789.10:ENST00000381024.4:ENST00000474583.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	126	2	2.56765	3.56785	4.56805	0.00835086	5.53921e-6	0.0774402	0.00163632
chr21	42869667	42869766	7467811	0	-	0.414141	(0.408,0.44]	chr21	760973	57	INTRON	INTRON	WDR4	ENSG00000160193.12	ENST00000330317.6:ENST00000476326.5:ENST00000398208.3:ENST00000492742.5:ENST00000479429.5:ENST00000463902.5:ENST00000470658.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	35	2	2.27698	3.56785	4.85872	0.0583528	0.00221911	0.167723	0.0435144
chr8	38971330	38971430	3738253	0	+	0.43	(0.408,0.44]	chr8	347456	8	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	PLEKHA2	ENSG00000169499.15	ENST00000521746.5:ENST00000617275.5:ENST00000616834.1:ENST00000518939.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	35	2	2.27698	3.56785	4.85872	0.0583528	0.00221911	0.167723	0.0435144
chr8	81830515	81830615	3980011	0	-	0.43	(0.408,0.44]	chr8	364693	6	INTRON	INTRON	SNX16	ENSG00000104497.15	ENST00000353788.8:ENST00000345957.9:ENST00000396330.6:ENST00000520618.5:ENST00000521810.5:ENST00000523757.5	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	2.27698	3.56785	4.85872	0.0583528	0.00221911	0.167723	0.0435144
chr5	154773978	154774078	2527184	0	+	0.41	(0.408,0.44]	chr5	241610	161	INTRON	INTRON	LARP1	ENSG00000155506.19	ENST00000687700.1:ENST00000336314.9:ENST00000690816.1:ENST00000518297.6:ENST00000517616.5:ENST00000518892.1:ENST00000521577.1:ENST00000519931.5:ENST00000524248.5:ENST00000685946.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	118	2	2.51198	3.567825	4.62367	0.00288187	1.6623e-6	0.0475859	7.79646e-4
chr1	246159566	246159665	677228	0	-	0.464646	(0.44,0.476]	chr1	79721	633	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000391836.3:ENST00000453676.5:ENST00000462422.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	47	2	2.13779	3.567805	4.99782	0.0264596	0.0013223	0.122506	0.0333932
chr2	15438863	15438963	1071923	0	-	0.45	(0.44,0.476]	chr2	114368	107	INTRON	INTRON	NBAS	ENSG00000151779.13	ENST00000281513.10	protein_coding	protein_coding	protein_coding	protein_coding	2	47	2	2.13779	3.567805	4.99782	0.0264596	0.0013223	0.122506	0.0333932
chr6	158587498	158587597	3021877	0	+	0.464646	(0.44,0.476]	chr6	281816	17	INTRON	INTRON	TMEM181	ENSG00000146433.10	ENST00000367090.4:ENST00000684151.1	protein_coding	protein_coding	protein_coding	protein_coding	2	47	2	2.13779	3.567805	4.99782	0.0264596	0.0013223	0.122506	0.0333932
chr2	110649305	110649377	1206562	0	-	0.388889	(0.378,0.408]	chr2	128643	2	CDS	CDS:EXON_MRNA	BUB1	ENSG00000169679.15	ENST00000302759.11:ENST00000535254.6:ENST00000409311.5:ENST00000671097.1:ENST00000466333.5:ENST00000490632.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	74	2	2.19294	3.56772	4.9425	0.00452675	0.00254418	0.0595107	0.0465115
chr14	102631211	102631311	5822919	0	+	0.59	(0.57,1]	chr14	552490	375	INTRON	INTRON	RCOR1	ENSG00000089902.10	ENST00000262241.7	protein_coding	protein_coding	protein_coding	protein_coding	8	122	2	3.20712	3.56761	3.9281	2.32009e-6	9.59159e-8	0.00106138	1.33808e-4
chr8	42541512	42541537	3942585	0	-	0.2	[0,0.28]	chr8	361344	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	SLC20A2	ENSG00000168575.10	ENST00000342228.7:ENST00000518384.1:ENST00000524237.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	102	2	3.52594	3.56761	3.60928	0.00224145	9.66382e-4	0.0423923	0.0285961
chr15	28656686	28656786	5988613	0	+	0.53	(0.515,0.57]	chr15	569359	1	SS3_PROX	SS3_PROX:INTRON	HERC2P9	ENSG00000206149.11	ENST00000529624.5:ENST00000530420.5:ENST00000528584.5	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript:transcribed_unprocessed_pseudogene	5	132	2	3.2508	3.567545	3.88429	4.99309e-5	3.95865e-6	0.00611391	0.00131614
chr3	37267440	37267539	1395996	0	+	0.313131	(0.28,0.32]	chr3	146325	1	INTRON	INTRON	GOLGA4	ENSG00000144674.17	ENST00000435830.6:ENST00000444882.5:ENST00000356847.8:ENST00000450863.6:ENST00000361924.7:ENST00000429018.5:ENST00000431105.1:ENST00000419177.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	75	2	2.2058	3.567545	4.92929	0.0098607	0.00496409	0.0838128	0.0646039
chr1	46116347	46116447	441955	0	-	0.44	(0.408,0.44]	chr1	53498	352	INTRON	INTRON	PIK3R3	ENSG00000117461.15	ENST00000372006.5:ENST00000262741.10:ENST00000420542.5:ENST00000423209.5:ENST00000493202.1:ENST00000425892.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	35	2	2.51492	3.567505	4.62009	0.0329839	0.00504155	0.133816	0.0646039
chr12	9422145	9422227	5264883	0	-	0.426829	(0.408,0.44]	chr12	501842	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DDX12P	ENSG00000214826.5	ENST00000432996.2	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	1	35	2	2.51492	3.567505	4.62009	0.0329839	0.00504155	0.133816	0.0646039
chr17	37616420	37616518	6764121	0	-	0.438776	(0.408,0.44]	chr17	665161	10	INTRON	INTRON	DDX52	ENSG00000278053.5	ENST00000617633.5:ENST00000616646.4:ENST00000620209.4:ENST00000614307.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	35	2	2.51492	3.567505	4.62009	0.0329839	0.00504155	0.133816	0.0646039
chr3	195673517	195673617	1593590	0	+	0.49	(0.476,0.515]	chr3	165051	3	SS3_PROX	SS3_PROX:INTRON	MUC20-OT1	ENSG00000242086.8	ENST00000429897.5:ENST00000445430.5:ENST00000446521.1	lncRNA	lncRNA	lncRNA	lncRNA	3	53	2	1.68092	3.5674099999999997	5.4539	0.0474026	5.16081e-4	0.169265	0.0208667
chr1	52880008	52880104	105288	0	+	0.447917	(0.44,0.476]	chr1	13768	17	INTRON	INTRON	ZYG11A	ENSG00000203995.10	ENST00000371532.5:ENST00000612017.4:ENST00000371528.2	protein_coding	protein_coding	protein_coding	protein_coding	5	72	2	1.45853	3.5670599999999997	5.67559	0.0470887	6.34721e-5	0.152251	0.00658818
chr7	97130390	97130490	3357085	0	+	0.59	(0.57,1]	chr7	313205	121	INTRON	INTRON	SDHAF3	ENSG00000196636.8	ENST00000432641.3:ENST00000489852.1:ENST00000360382.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	34	2	2.07956	3.567025	5.05449	0.013114	1.79828e-4	0.0998629	0.0121697
chr1	164062	164162	352949	0	-	0.39	(0.378,0.408]	chr1	40814	4	SS5_PROX	SS5_PROX:INTRON	ENSG00000241860	ENSG00000241860.7	ENST00000466557.6	lncRNA	lncRNA	lncRNA	lncRNA	4	122	2	2.95431	3.5670200000000003	4.17973	4.09829e-4	2.85856e-5	0.0185932	0.00423319
chrX	152732144	152732244	7910008	0	-	0.36	(0.35,0.378]	chrX	804879	3	SS5_PROX	SS5_PROX:INTRON	CSAG1	ENSG00000198930.13	ENST00000370287.7:ENST00000452779.3:ENST00000361211.9:ENST00000370291.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	37	2	3.16371	3.567015	3.97032	0.0578667	0.00383956	0.167723	0.0562562
chr1	219209118	219209217	318733	0	+	0.414141	(0.408,0.44]	chr1	36461	100	INTRON	INTRON	LYPLAL1	ENSG00000143353.12	ENST00000460522.5:ENST00000366927.3:ENST00000366928.10:ENST00000477938.5:ENST00000463964.5:ENST00000483635.5:ENST00000474379.5:ENST00000469590.5:ENST00000478794.5:ENST00000475724.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	54	2	2.30838	3.56684	4.8253	0.0056738	0.00547703	0.0671198	0.0653997
chr1	220015436	220015535	638869	0	-	0.363636	(0.35,0.378]	chr1	75264	40	INTRON	INTRON	EPRS1	ENSG00000136628.18	ENST00000366923.8:ENST00000609181.5:ENST00000477030.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	46	2	2.34278	3.5667850000000003	4.79079	0.0129593	0.00846427	0.0991015	0.0776969
chr5	176971856	176971954	2776586	0	-	0.357143	(0.35,0.378]	chr5	261567	6	INTRON	INTRON	UIMC1	ENSG00000087206.17	ENST00000377227.8:ENST00000511320.6:ENST00000506128.5:ENST00000512031.5:ENST00000509236.5:ENST00000417486.6:ENST00000515488.1:ENST00000507513.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	46	2	2.34278	3.5667850000000003	4.79079	0.0129593	0.00846427	0.0991015	0.0776969
chr1	187072526	187072626	278036	0	+	0.52	(0.515,0.57]	chr1	32509	2	EXON_LNCRNA	EXON_LNCRNA	LINC01036	ENSG00000230426.5	ENST00000643891.1:ENST00000609113.2:ENST00000657376.1:ENST00000670356.1	lncRNA	lncRNA	lncRNA	lncRNA	2	45	2	2.6325	3.5667599999999995	4.50102	0.00510768	0.00439001	0.0646039	0.0585064
chr20	49144603	49144702	7351935	0	-	0.373737	(0.35,0.378]	chr20	749652	83	INTRON	INTRON	STAU1	ENSG00000124214.21	ENST00000371856.7:ENST00000371828.7:ENST00000340954.11:ENST00000347458.9:ENST00000360426.8:ENST00000371792.5:ENST00000371802.5:ENST00000437404.2	protein_coding	protein_coding	protein_coding	protein_coding	3	55	2	1.82281	3.566695	5.31058	0.0316938	0.00160599	0.144635	0.0364977
chr6	20658771	20658871	2829629	0	+	0.36	(0.35,0.378]	chr6	265655	90	INTRON	INTRON	CDKAL1	ENSG00000145996.11	ENST00000274695.8:ENST00000378610.1	protein_coding	protein_coding	protein_coding	protein_coding	3	55	2	1.82281	3.566695	5.31058	0.0316938	0.00160599	0.144635	0.0364977
chr16	24782355	24782454	6329746	0	+	0.454545	(0.44,0.476]	chr16	605958	35	INTRON	INTRON	TNRC6A	ENSG00000090905.19	ENST00000395799.8:ENST00000315183.11:ENST00000491718.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	72	2	3.26669	3.5666450000000003	3.8666	0.00305435	1.50865e-4	0.0493883	0.0106137
chr1	24667923	24668023	46003	0	+	0.38	(0.378,0.408]	chr1	5742	6	INTRON	INTRON	SRRM1	ENSG00000133226.18	ENST00000374389.8:ENST00000323848.14:ENST00000479034.5:ENST00000596378.1:ENST00000489130.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	33	2	2.63247	3.566515	4.50056	0.0215745	0.015974	0.123836	0.101453
chr1	147167590	147167666	542319	0	-	0.407895	(0.378,0.408]	chr1	63606	3	SS5_PROX	SS5_PROX:INTRON	PRKAB2	ENSG00000131791.8	ENST00000254101.4:ENST00000474939.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	33	2	2.63247	3.566515	4.50056	0.0215745	0.015974	0.123836	0.101453
chr12	6599372	6599472	5259582	0	-	0.4	(0.378,0.408]	chr12	500805	2	SS5_PROX	SS5_PROX:INTRON	CHD4	ENSG00000111642.16	ENST00000645022.1:ENST00000544040.7:ENST00000544484.6:ENST00000357008.7:ENST00000642810.1:ENST00000643335.1:ENST00000643815.1:ENST00000646806.1:ENST00000644137.1:ENST00000642879.1:ENST00000645645.1:ENST00000642594.1:ENST00000646268.1:ENST00000645095.1:ENST00000646608.1:ENST00000645005.1:ENST00000644801.1:ENST00000644289.1:ENST00000646366.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	33	2	2.63247	3.566515	4.50056	0.0215745	0.015974	0.123836	0.101453
chr7	121370601	121370700	3630640	0	-	0.40404	(0.378,0.408]	chr7	337365	61	INTRON	INTRON	FAM3C	ENSG00000196937.11	ENST00000359943.8:ENST00000412653.5:ENST00000426156.1	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	2.63247	3.566515	4.50056	0.0215745	0.015974	0.123836	0.101453
chrX	44993484	44993584	7649808	0	+	0.39	(0.378,0.408]	chrX	782744	164	INTRON	INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000675440.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000621147.5:ENST00000475233.1:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	33	2	2.63247	3.566515	4.50056	0.0215745	0.015974	0.123836	0.101453
chr11	76134195	76134295	4835390	0	+	0.53	(0.515,0.57]	chr11	451013	178	INTRON	INTRON	UVRAG	ENSG00000198382.9	ENST00000356136.8:ENST00000528420.5:ENST00000533454.5:ENST00000531818.5:ENST00000532130.1:ENST00000525183.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	51	2	1.56681	3.56649	5.56617	0.064862	5.44229e-5	0.179394	0.00603408
chr6	35919964	35920064	3088815	0	-	0.45	(0.44,0.476]	chr6	288900	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	SRPK1	ENSG00000096063.16	ENST00000373825.7:ENST00000423325.6:ENST00000346162.10:ENST00000361690.7:ENST00000510290.5:ENST00000508473.5:ENST00000512445.5:ENST00000513367.1:ENST00000507909.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	38	2	3.02751	3.5664550000000004	4.1054	0.0220205	0.00715968	0.123836	0.0723634
chr1	22087177	22087275	42562	0	+	0.27551	[0,0.28]	chr1	5126	4	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	ENSG00000289694:CDC42	ENSG00000289694.1:ENSG00000070831.18	ENST00000695855.1:ENST00000695856.1:ENST00000344548.8:ENST00000400259.5:ENST00000667384.2:ENST00000411827.2:ENST00000695858.1:ENST00000695857.1:ENST00000315554.14:ENST00000695859.1:ENST00000498236.1:ENST00000656825.1:ENST00000695860.1:ENST00000695796.1:ENST00000695797.1:ENST00000662562.2:ENST00000695798.1:ENST00000695799.1:ENST00000695800.1:ENST00000695801.1:ENST00000695802.1:ENST00000695861.1:ENST00000695862.1:ENST00000695863.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	41	2	2.74901	3.56644	4.38387	0.0501911	0.0188843	0.156383	0.118148
chr18	26048333	26048433	6959297	0	-	0.27	[0,0.28]	chr18	688437	85	INTRON	INTRON	SS18	ENSG00000141380.14	ENST00000415083.7:ENST00000542420.6:ENST00000579640.5:ENST00000269138.9:ENST00000269137.11:ENST00000585121.5:ENST00000539244.6:ENST00000585241.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	41	2	2.74901	3.56644	4.38387	0.0501911	0.0188843	0.156383	0.118148
chr3	25631607	25631692	1641824	0	-	0.247059	[0,0.28]	chr3	168546	3	INTRON	INTRON	TOP2B	ENSG00000077097.16	ENST00000264331.9:ENST00000435706.6:ENST00000424225.1	protein_coding	protein_coding	protein_coding	protein_coding	1	41	2	2.74901	3.56644	4.38387	0.0501911	0.0188843	0.156383	0.118148
chr4	126626987	126627087	2236979	0	-	0.2	[0,0.28]	chr4	219023	1615	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	1	41	2	2.74901	3.56644	4.38387	0.0501911	0.0188843	0.156383	0.118148
chr1	12203662	12203761	28167	0	+	0.40404	(0.378,0.408]	chr1	3364	11	INTRON	INTRON	TNFRSF1B	ENSG00000028137.19	ENST00000376259.7:ENST00000492361.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	33	2	2.54849	3.56638	4.58427	0.0273196	0.0128325	0.136494	0.0926667
chr1	16292609	16292708	382017	0	-	0.383838	(0.378,0.408]	chr1	44870	4	EXON_LNCRNA	EXON_LNCRNA:INTRON	FBXO42	ENSG00000037637.11	ENST00000375592.8:ENST00000478089.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	33	2	2.54849	3.56638	4.58427	0.0273196	0.0128325	0.136494	0.0926667
chr15	67184028	67184127	6053047	0	+	0.393939	(0.378,0.408]	chr15	576324	22	INTRON	INTRON	SMAD3	ENSG00000166949.17	ENST00000327367.9:ENST00000679624.1:ENST00000540846.6:ENST00000558894.5:ENST00000439724.7:ENST00000681239.1:ENST00000537194.6:ENST00000558827.1:ENST00000560402.1:ENST00000680689.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	33	2	2.54849	3.56638	4.58427	0.0273196	0.0128325	0.136494	0.0926667
chr15	87349822	87349922	6253045	0	-	0.39	(0.378,0.408]	chr15	596790	226	INTRON	INTRON	ENSG00000259560	ENSG00000259560.2	ENST00000665121.1:ENST00000656130.1	lncRNA	lncRNA	lncRNA	lncRNA	1	33	2	2.54849	3.56638	4.58427	0.0273196	0.0128325	0.136494	0.0926667
chr4	1220467	1220566	2094711	0	-	0.383838	(0.378,0.408]	chr4	207127	39	INTRON	INTRON	CTBP1	ENSG00000159692.16	ENST00000382952.8:ENST00000290921.10:ENST00000504092.5:ENST00000510739.1:ENST00000505826.5:ENST00000514669.5:ENST00000506180.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	33	2	2.54849	3.56638	4.58427	0.0273196	0.0128325	0.136494	0.0926667
chr7	33052980	33053079	3516336	0	-	0.383838	(0.378,0.408]	chr7	327910	70	INTRON	INTRON	NT5C3A	ENSG00000122643.23	ENST00000456458.5:ENST00000610140.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	33	2	2.54849	3.56638	4.58427	0.0273196	0.0128325	0.136494	0.0926667
chr18	46225382	46225481	6899597	0	+	0.30303	(0.28,0.32]	chr18	683614	63	INTRON	INTRON	C18orf25	ENSG00000152242.11	ENST00000588730.1:ENST00000615052.5:ENST00000619301.4:ENST00000615553.1	protein_coding	protein_coding	protein_coding	protein_coding	4	72	2	2.03152	3.5661050000000003	5.10069	0.00983556	0.00610574	0.0877296	0.0676501
chr6	149794069	149794169	2996490	0	+	0.3	(0.28,0.32]	chr6	280385	4	SS5_PROX	SS5_PROX:INTRON	PCMT1	ENSG00000120265.19	ENST00000367384.7:ENST00000367378.6:ENST00000484601.6:ENST00000367380.9:ENST00000544496.5:ENST00000649295.1:ENST00000464889.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	72	2	2.03152	3.5661050000000003	5.10069	0.00983556	0.00610574	0.0877296	0.0676501
chr14	30559501	30559598	5674388	0	+	0.484536	(0.476,0.515]	chr14	540495	3	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	G2E3	ENSG00000092140.16	ENST00000206595.11:ENST00000438909.6:ENST00000544007.5:ENST00000550944.5:ENST00000552488.1:ENST00000648008.1:ENST00000553504.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	35	2	2.13854	3.56598	4.99342	0.0776563	0.00139274	0.196285	0.0341261
chr6	28142210	28142263	2839325	0	+	0.377358	(0.35,0.378]	chr6	266499	1	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	ZKSCAN8	ENSG00000198315.11	ENST00000330236.7:ENST00000606198.5:ENST00000457389.6:ENST00000536028.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	51	2	2.23651	3.56587	4.89523	0.020879	0.00253947	0.111766	0.0465056
chr9	37199142	37199242	4118448	0	+	0.37	(0.35,0.378]	chr9	375389	122	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000461038.5:ENST00000488607.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	51	2	2.23651	3.56587	4.89523	0.020879	0.00253947	0.111766	0.0465056
chr18	9489223	9489323	6871271	0	+	0.26	[0,0.28]	chr18	680716	94	INTRON	INTRON	RALBP1	ENSG00000017797.13	ENST00000019317.8:ENST00000585015.6:ENST00000383432.8:ENST00000609094.2:ENST00000458039.3:ENST00000577221.1	protein_coding	protein_coding	protein_coding	protein_coding	2	55	2	2.24546	3.565855	4.88625	0.0206502	0.0173315	0.122348	0.104099
chr7	139252457	139252557	3436797	0	+	0.19	[0,0.28]	chr7	320201	4	SS5_PROX	SS5_PROX:INTRON	UBN2	ENSG00000157741.15	ENST00000486663.5:ENST00000473989.8	protein_coding	protein_coding	protein_coding	protein_coding	2	55	2	2.24546	3.565855	4.88625	0.0206502	0.0173315	0.122348	0.104099
chr1	197742690	197742790	616619	0	-	0.36	(0.35,0.378]	chr1	72894	65	INTRON	INTRON	DENND1B	ENSG00000213047.13	ENST00000620048.6:ENST00000294737.11:ENST00000367396.7:ENST00000235453.8:ENST00000422998.1:ENST00000468589.5:ENST00000495550.5:ENST00000477581.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	34	2	2.6498	3.56582	4.48184	0.0210137	0.0191702	0.122348	0.108861
chr10	80189840	80189939	4658103	0	-	0.363636	(0.35,0.378]	chr10	429147	80	INTRON	INTRON	ANXA11	ENSG00000122359.18	ENST00000372231.7:ENST00000438331.5:ENST00000422982.8:ENST00000463657.1:ENST00000474545.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	34	2	2.6498	3.56582	4.48184	0.0210137	0.0191702	0.122348	0.108861
chr17	2641442	2641539	6547920	0	+	0.360825	(0.35,0.378]	chr17	635237	23	EXON_MRNA	EXON_MRNA:INTRON	PAFAH1B1:ENSG00000279432	ENSG00000007168.14:ENSG00000279432.1	ENST00000576586.5:ENST00000397195.10:ENST00000676201.1:ENST00000575477.5:ENST00000675621.1:ENST00000676353.1:ENST00000674717.1:ENST00000675202.1:ENST00000675764.1:ENST00000674608.1:ENST00000676077.1:ENST00000676098.1:ENST00000572915.6:ENST00000570400.1:ENST00000675430.1:ENST00000675331.1:ENST00000676188.1:ENST00000574816.5:ENST00000675390.1:ENST00000676456.1:ENST00000622996.1	protein_coding	protein_coding	protein_coding:TEC	protein_coding:retained_intron:nonsense_mediated_decay:TEC:processed_transcript	1	34	2	2.6498	3.56582	4.48184	0.0210137	0.0191702	0.122348	0.108861
chr7	77816049	77816149	3344122	0	+	0.36	(0.35,0.378]	chr7	311483	167	INTRON	INTRON	PHTF2	ENSG00000006576.17	ENST00000422959.7:ENST00000416283.6:ENST00000307305.12:ENST00000424760.5:ENST00000415251.6:ENST00000275575.11	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	2.6498	3.56582	4.48184	0.0210137	0.0191702	0.122348	0.108861
chr1	11185383	11185482	377735	0	-	0.373737	(0.35,0.378]	chr1	44235	175	INTRON	INTRON	MTOR	ENSG00000198793.13	ENST00000361445.9	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	2.48657	3.56557	4.64457	0.032907	0.012652	0.145164	0.0926667
chr10	86805886	86805986	4479890	0	+	0.36	(0.35,0.378]	chr10	412292	486	INTRON	INTRON	BMPR1A	ENSG00000107779.14	ENST00000638429.1:ENST00000372037.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	34	2	2.48657	3.56557	4.64457	0.032907	0.012652	0.145164	0.0926667
chr11	78135847	78135946	4998306	0	-	0.373737	(0.35,0.378]	chr11	472387	1	INTRON	INTRON	ALG8	ENSG00000159063.14	ENST00000679559.1:ENST00000680398.1:ENST00000681221.1:ENST00000527099.2:ENST00000681489.1:ENST00000525783.6:ENST00000529139.6:ENST00000680761.1:ENST00000525870.6:ENST00000680866.1:ENST00000680223.1:ENST00000526737.6:ENST00000681575.1:ENST00000299626.10:ENST00000680467.1:ENST00000679497.1:ENST00000681351.1:ENST00000679697.1:ENST00000680580.1:ENST00000526849.6:ENST00000680256.1:ENST00000680797.1:ENST00000681723.1:ENST00000680142.1:ENST00000679685.1:ENST00000681384.1:ENST00000679874.1:ENST00000679444.1:ENST00000680459.1:ENST00000681699.1:ENST00000679986.1:ENST00000680063.1:ENST00000530608.6:ENST00000681765.1:ENST00000681225.1:ENST00000681417.1:ENST00000530910.6:ENST00000680329.1:ENST00000376156.7:ENST00000679648.1:ENST00000680101.1:ENST00000680829.1:ENST00000525761.3:ENST00000532440.6:ENST00000680996.1:ENST00000532306.6:ENST00000680399.1:ENST00000679539.1:ENST00000615266.5:ENST00000681957.1:ENST00000532552.2:ENST00000680643.1:ENST00000530454.6:ENST00000525755.6:ENST00000532050.5:ENST00000526928.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	34	2	2.48657	3.56557	4.64457	0.032907	0.012652	0.145164	0.0926667
chr6	35621969	35622068	3086847	0	-	0.363636	(0.35,0.378]	chr6	288775	13	INTRON	INTRON	FKBP5	ENSG00000096060.15	ENST00000536438.5:ENST00000539068.5:ENST00000357266.9:ENST00000542713.1	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	2.48657	3.56557	4.64457	0.032907	0.012652	0.145164	0.0926667
chr11	72066290	72066389	4976695	0	-	0.292929	(0.28,0.32]	chr11	470137	12	EXON_LNCRNA	EXON_LNCRNA:INTRON	NUMA1	ENSG00000137497.19	ENST00000393695.8:ENST00000358965.10:ENST00000351960.10:ENST00000613205.4:ENST00000537217.5:ENST00000540843.5:ENST00000534987.5:ENST00000543937.5:ENST00000535087.5:ENST00000368959.9:ENST00000541719.5:ENST00000366394.7:ENST00000541641.5:ENST00000537905.5:ENST00000535111.5:ENST00000535838.5:ENST00000546131.1:ENST00000543450.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	90	2	3.54995	3.565475	3.581	0.00157396	8.63544e-4	0.0361918	0.0266494
chr6	32156078	32156178	2844466	0	+	0.42	(0.408,0.44]	chr6	268233	1	SS5_PROX	SS5_PROX:INTRON	PPT2:PPT2-EGFL8	ENSG00000221988.13:ENSG00000258388.7	ENST00000361568.6:ENST00000478521.5:ENST00000395523.5:ENST00000428388.6:ENST00000585246.5:ENST00000375137.6:ENST00000375143.6:ENST00000324816.11:ENST00000424499.1:ENST00000493548.5:ENST00000422437.5:ENST00000436118.2:ENST00000453656.6:ENST00000583227.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	115	2	3.04238	3.5654700000000004	4.08856	1.54233e-4	8.21424e-5	0.0106835	0.00812487
chr7	43584048	43584148	3312332	0	+	0.53	(0.515,0.57]	chr7	307612	2	INTRON	INTRON	STK17A	ENSG00000164543.7	ENST00000462448.1:ENST00000648544.1:ENST00000319357.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	34	2	3.09002	3.56544	4.04086	0.0197045	0.00491099	0.120063	0.0609494
chr1	77647443	77647543	493111	0	-	0.49	(0.476,0.515]	chr1	58315	54	INTRON	INTRON	ZZZ3	ENSG00000036549.13	ENST00000370801.8:ENST00000370798.5:ENST00000433749.5:ENST00000414381.5:ENST00000463166.5:ENST00000469944.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	67	2	1.77073	3.56534	5.35995	0.0151174	7.54256e-4	0.108513	0.0251179
chr1	37535047	37535147	424072	0	-	0.49	(0.476,0.515]	chr1	51268	7	UTR3	UTR3:EXON_MRNA	SNIP1	ENSG00000163877.11	ENST00000296215.8	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	2.69967	3.5652999999999997	4.43093	0.0195838	0.00931369	0.109483	0.0855292
chr22	18097233	18097332	7476155	0	+	0.484848	(0.476,0.515]	chr22	762231	93	UTR3	UTR3:EXON_MRNA	PEX26	ENSG00000215193.14	ENST00000329627.11:ENST00000399744.8	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	2.69967	3.5652999999999997	4.43093	0.0195838	0.00931369	0.109483	0.0855292
chr7	23367661	23367761	3502632	0	-	0.48	(0.476,0.515]	chr7	326877	46	INTRON	INTRON	IGF2BP3	ENSG00000136231.14	ENST00000258729.8:ENST00000421467.6:ENST00000468263.5:ENST00000492771.5:ENST00000479504.5:ENST00000466809.6:ENST00000491719.5:ENST00000465058.5:ENST00000469723.5:ENST00000474105.5:ENST00000476938.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	35	2	2.69967	3.5652999999999997	4.43093	0.0195838	0.00931369	0.109483	0.0855292
chr7	24839792	24839891	3504404	0	-	0.494949	(0.476,0.515]	chr7	327035	47	INTRON	INTRON	OSBPL3	ENSG00000070882.13	ENST00000313367.7:ENST00000409863.5:ENST00000396431.5:ENST00000409452.5:ENST00000409759.5:ENST00000409555.5:ENST00000396429.5:ENST00000409069.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	35	2	2.69967	3.5652999999999997	4.43093	0.0195838	0.00931369	0.109483	0.0855292
chr17	44878465	44878564	6781333	0	-	0.272727	[0,0.28]	chr17	668831	20	INTRON	INTRON	EFTUD2	ENSG00000108883.13	ENST00000426333.7:ENST00000592576.5:ENST00000591382.5:ENST00000402521.7:ENST00000587957.1:ENST00000593200.5:ENST00000588374.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	45	2	2.49527	3.56525	4.63523	0.0436497	0.0139836	0.14882	0.10247
chr2	96880983	96881083	1182034	0	-	0.6	(0.57,1]	chr2	126720	21	INTRON	INTRON	FAM178B	ENSG00000168754.15	ENST00000393526.6:ENST00000490605.3:ENST00000470789.5:ENST00000494172.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	11	137	2	2.73604	3.56505	4.39406	6.14371e-6	2.41597e-8	0.00185892	5.79662e-5
chr1	207352813	207352912	303589	0	+	0.272727	[0,0.28]	chr1	34932	49	INTRON	INTRON	CD55	ENSG00000196352.18	ENST00000695822.1:ENST00000695823.1:ENST00000695826.1:ENST00000695825.1:ENST00000695827.1:ENST00000645323.1:ENST00000391921.9:ENST00000367064.9:ENST00000314754.12:ENST00000644836.1:ENST00000476590.1:ENST00000465534.5:ENST00000618707.2:ENST00000635614.2:ENST00000695831.1:ENST00000634386.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	40	2	2.43761	3.5647599999999997	4.69191	0.0423864	0.0269474	0.161744	0.123442
chr12	98545660	98545759	5198933	0	+	0.252525	[0,0.28]	chr12	491834	2	INTRON	INTRON	TMPO	ENSG00000120802.14	ENST00000556029.6:ENST00000343315.9:ENST00000393053.6:ENST00000556678.1:ENST00000548223.5:ENST00000551987.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	40	2	2.43761	3.5647599999999997	4.69191	0.0423864	0.0269474	0.161744	0.123442
chr22	20793558	20793650	7559013	0	-	0.26087	[0,0.28]	chr22	773118	3	SS3_PROX	SS3_PROX:INTRON	PI4KA	ENSG00000241973.11	ENST00000255882.11:ENST00000484220.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	40	2	2.43761	3.5647599999999997	4.69191	0.0423864	0.0269474	0.161744	0.123442
chr7	64341148	64341247	3319715	0	+	0.262626	[0,0.28]	chr7	308636	38	INTRON	INTRON	ZNF736	ENSG00000234444.10	ENST00000355095.8:ENST00000423484.3	protein_coding	protein_coding	protein_coding	protein_coding	1	40	2	2.43761	3.5647599999999997	4.69191	0.0423864	0.0269474	0.161744	0.123442
chr7	111283093	111283193	3621313	0	-	0.22	[0,0.28]	chr7	337093	3192	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	40	2	2.43761	3.5647599999999997	4.69191	0.0423864	0.0269474	0.161744	0.123442
chrX	13356188	13356287	7622518	0	+	0.272727	[0,0.28]	chrX	780353	145	INTRON	INTRON	LINC01203	ENSG00000226985.7	ENST00000669963.1:ENST00000661545.1:ENST00000659526.1:ENST00000656410.1:ENST00000661104.1:ENST00000456091.2:ENST00000655502.1:ENST00000671651.1:ENST00000656979.1:ENST00000656271.1:ENST00000661629.1:ENST00000661464.1:ENST00000668192.1:ENST00000665887.1:ENST00000659191.1:ENST00000667868.1:ENST00000653729.1:ENST00000656111.1	lncRNA	lncRNA	lncRNA	lncRNA	1	40	2	2.43761	3.5647599999999997	4.69191	0.0423864	0.0269474	0.161744	0.123442
chrX	13350602	13350702	7622462	0	+	0.43	(0.408,0.44]	chrX	780353	89	INTRON	INTRON	LINC01203	ENSG00000226985.7	ENST00000669963.1:ENST00000661545.1:ENST00000659526.1:ENST00000656410.1:ENST00000661104.1:ENST00000456091.2:ENST00000655502.1:ENST00000671651.1:ENST00000656979.1:ENST00000656271.1:ENST00000661629.1:ENST00000661464.1:ENST00000668192.1:ENST00000665887.1:ENST00000659191.1:ENST00000667868.1:ENST00000653729.1:ENST00000656111.1	lncRNA	lncRNA	lncRNA	lncRNA	3	97	2	3.53387	3.5647149999999996	3.59556	8.33275e-4	4.96441e-5	0.0266389	0.00577648
chr7	10775382	10775482	3484534	0	-	0.46	(0.44,0.476]	chr7	325772	2135	INTRON	INTRON	MGC4859	ENSG00000283117.1	ENST00000634803.1	lncRNA	lncRNA	lncRNA	lncRNA	5	153	2	3.47021	3.564705	3.6592	4.14053e-5	1.14089e-5	0.0054616	0.00249332
chr12	31078637	31078737	5106264	0	+	0.42	(0.408,0.44]	chr12	482172	1	SS5_PROX	SS5_PROX:INTRON	DDX11	ENSG00000013573.17	ENST00000542838.6:ENST00000228264.10:ENST00000542129.5:ENST00000438391.6:ENST00000435753.6:ENST00000540935.5:ENST00000539049.5:ENST00000536265.5:ENST00000415475.6:ENST00000545668.5:ENST00000350437.8:ENST00000535158.5:ENST00000543756.5:ENST00000542244.5:ENST00000535317.5:ENST00000544652.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	99	2	3.45019	3.564615	3.67904	0.00152664	2.07254e-5	0.0353936	0.00353137
chr21	22283305	22283405	7385201	0	+	0.42	(0.408,0.44]	chr21	752727	701	INTRON	INTRON	ENSG00000226043	ENSG00000226043.2	ENST00000667099.1:ENST00000654607.1:ENST00000444130.1	lncRNA	lncRNA	lncRNA	lncRNA	2	72	2	3.37162	3.564585	3.75755	0.00208674	2.62433e-4	0.0411801	0.0143317
chr7	128495041	128495141	3407260	0	+	0.44	(0.408,0.44]	chr7	318309	7	INTRON	INTRON	METTL2B	ENSG00000165055.16	ENST00000482555.5:ENST00000262432.13:ENST00000497665.5:ENST00000480046.5:ENST00000481392.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	72	2	3.45019	3.5645249999999997	3.67886	0.00152664	3.86173e-4	0.0353936	0.017761
chr10	17647376	17647476	4399298	0	+	0.38	(0.378,0.408]	chr10	406150	26	INTRON	INTRON	STAM	ENSG00000136738.15	ENST00000377524.8:ENST00000377500.1:ENST00000445846.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	56	2	2.39048	3.564435	4.73839	0.00837252	0.00395852	0.0774402	0.057511
chr15	100572354	100572450	6268723	0	-	0.385417	(0.378,0.408]	chr15	597865	4	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	LINS1	ENSG00000140471.17	ENST00000560783.1:ENST00000314742.13:ENST00000559169.1:ENST00000559149.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	51	2	2.43657	3.5641300000000005	4.69169	0.0106733	0.00432302	0.0861859	0.0599409
chr1	220045444	220045543	639183	0	-	0.434343	(0.408,0.44]	chr1	75333	48	INTRON	INTRON	EPRS1	ENSG00000136628.18	ENST00000366923.8:ENST00000609181.5:ENST00000477030.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	96	2	3.40063	3.56412	3.72761	4.662e-4	1.06576e-4	0.0199613	0.00874587
chr5	27493651	27493748	2329807	0	+	0.474227	(0.44,0.476]	chr5	225125	4	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PURPL	ENSG00000250337.8	ENST00000651409.1:ENST00000650981.1:ENST00000655107.1:ENST00000657375.2:ENST00000659077.1:ENST00000653835.1:ENST00000657173.1:ENST00000514844.6:ENST00000657424.1:ENST00000660307.1:ENST00000669423.1:ENST00000652841.1:ENST00000686605.1:ENST00000690628.1:ENST00000510165.6:ENST00000670554.1:ENST00000665451.1:ENST00000667624.1:ENST00000667420.1:ENST00000660639.1:ENST00000668406.1:ENST00000656783.1:ENST00000664566.1:ENST00000659489.1:ENST00000667264.1:ENST00000654039.1:ENST00000505775.5:ENST00000668103.1:ENST00000664501.1:ENST00000661698.1:ENST00000655438.1:ENST00000658312.1:ENST00000671061.1	lncRNA	lncRNA	lncRNA	lncRNA	1	33	2	2.89047	3.5640099999999997	4.23755	0.0263357	0.00955699	0.122221	0.0863913
chr22	20461478	20461577	7557173	0	-	0.434343	(0.408,0.44]	chr22	772774	31	INTRON	INTRON	KLHL22	ENSG00000099910.17	ENST00000328879.9:ENST00000487090.1:ENST00000479601.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	47	2	2.00228	3.56398	5.12568	0.0389732	7.90919e-4	0.143072	0.0258324
chr21	43881943	43882043	7413957	0	+	0.4	(0.378,0.408]	chr21	755688	142	INTRON	INTRON	AGPAT3	ENSG00000160216.21	ENST00000291572.13:ENST00000448287.5	protein_coding	protein_coding	protein_coding	protein_coding	4	133	2	3.46251	3.5639149999999997	3.66532	1.37139e-4	2.39759e-5	0.0106749	0.00383194
chr2	69357828	69357928	1147006	0	-	0.43	(0.408,0.44]	chr2	122494	1	SS5_PROX	SS5_PROX:INTRON	GFPT1	ENSG00000198380.13	ENST00000361060.5:ENST00000357308.9:ENST00000674507.1:ENST00000674438.1	protein_coding	protein_coding	protein_coding	protein_coding	8	181	2	2.96721	3.5638199999999998	4.16043	5.66588e-5	8.65029e-6	0.00655354	0.00211124
chr20	31762271	31762371	7253893	0	+	0.29	(0.28,0.32]	chr20	736745	17	INTRON	INTRON	TPX2	ENSG00000088325.16	ENST00000340513.4:ENST00000300403.11	protein_coding	protein_coding	protein_coding	protein_coding	2	50	2	2.08149	3.5636400000000004	5.04579	0.031124	0.00714672	0.143644	0.0723634
chr1	29001504	29001603	59831	0	+	0.373737	(0.35,0.378]	chr1	7649	38	INTRON	INTRON	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000647918.1:ENST00000646800.1:ENST00000644342.1:ENST00000646189.1:ENST00000482464.6:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000646260.1:ENST00000373798.5:ENST00000644600.1:ENST00000649674.1:ENST00000643173.1:ENST00000343067.9:ENST00000644780.1:ENST00000650265.1:ENST00000648181.1:ENST00000643604.1:ENST00000648891.1:ENST00000373797.2:ENST00000349460.9:ENST00000645184.1:ENST00000645111.1:ENST00000643302.1:ENST00000645999.1:ENST00000642643.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	35	2	2.92952	3.56331	4.1971	0.0367539	0.00881187	0.138959	0.084878
chr15	49026765	49026864	6167101	0	-	0.373737	(0.35,0.378]	chr15	587780	69	INTRON	INTRON	SECISBP2L	ENSG00000138593.9	ENST00000559471.6:ENST00000261847.7:ENST00000380927.6:ENST00000559424.1	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	2.92952	3.56331	4.1971	0.0367539	0.00881187	0.138959	0.084878
chr15	82483517	82483616	6247084	0	-	0.353535	(0.35,0.378]	chr15	596152	52	INTRON	INTRON	GOLGA2P10	ENSG00000255769.7	ENST00000618004.4:ENST00000614347.4:ENST00000618267.4:ENST00000612379.4:ENST00000619738.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	1	35	2	2.92952	3.56331	4.1971	0.0367539	0.00881187	0.138959	0.084878
chr17	67140394	67140493	6824754	0	-	0.353535	(0.35,0.378]	chr17	674428	19	INTRON	INTRON	HELZ	ENSG00000198265.12	ENST00000358691.10:ENST00000579953.5:ENST00000580168.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	35	2	2.92952	3.56331	4.1971	0.0367539	0.00881187	0.138959	0.084878
chr22	29999551	29999649	7498699	0	+	0.357143	(0.35,0.378]	chr22	765063	3	INTRON	INTRON	MTMR3	ENSG00000100330.16	ENST00000333027.7:ENST00000401950.7:ENST00000323630.9:ENST00000351488.7:ENST00000406629.1	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	2.92952	3.56331	4.1971	0.0367539	0.00881187	0.138959	0.084878
chr1	215575974	215576074	314264	0	+	0.18	[0,0.28]	chr1	36204	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	KCTD3	ENSG00000136636.13	ENST00000259154.9:ENST00000448333.1	protein_coding	protein_coding	protein_coding	protein_coding	1	40	2	2.5055	3.5631700000000004	4.62084	0.0359431	0.0313633	0.152322	0.13151
chr3	197864622	197864722	1598472	0	+	0.21	[0,0.28]	chr3	165649	53	INTRON	INTRON	LRCH3	ENSG00000186001.14	ENST00000438796.6:ENST00000428136.2:ENST00000425562.7:ENST00000441090.6:ENST00000414675.6:ENST00000334859.8:ENST00000461674.5:ENST00000452660.5:ENST00000433298.5:ENST00000481048.5:ENST00000471667.5:ENST00000483442.5:ENST00000473177.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	40	2	2.5055	3.5631700000000004	4.62084	0.0359431	0.0313633	0.152322	0.13151
chr5	104252881	104252981	2442944	0	+	0.25	[0,0.28]	chr5	234410	1476	INTRON	INTRON	LINC02163	ENSG00000251026.2	ENST00000662211.1:ENST00000666145.1	lncRNA	lncRNA	lncRNA	lncRNA	1	40	2	2.5055	3.5631700000000004	4.62084	0.0359431	0.0313633	0.152322	0.13151
chr7	72884957	72885056	3329845	0	+	0.272727	[0,0.28]	chr7	309555	47	INTRON	INTRON	POM121	ENSG00000196313.13	ENST00000627934.3:ENST00000395270.5	protein_coding	protein_coding	protein_coding	protein_coding	1	40	2	2.5055	3.5631700000000004	4.62084	0.0359431	0.0313633	0.152322	0.13151
chr9	34181824	34181924	4111296	0	+	0.27	[0,0.28]	chr9	374718	22	INTRON	INTRON	UBAP1	ENSG00000165006.14	ENST00000625521.2:ENST00000379186.8:ENST00000297661.9:ENST00000626262.2	protein_coding	protein_coding	protein_coding	protein_coding	1	40	2	2.5055	3.5631700000000004	4.62084	0.0359431	0.0313633	0.152322	0.13151
chr7	102007698	102007798	3368271	0	+	0.47	(0.44,0.476]	chr7	315233	477	INTRON	INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000497815.5:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000558469.5:ENST00000560541.5:ENST00000558836.5:ENST00000606749.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	33	2	2.29425	3.563135	4.83202	0.0518406	0.00525002	0.176696	0.0633615
chr8	140450289	140450389	4075273	0	-	0.45	(0.44,0.476]	chr8	370154	1	SS5_PROX	SS5_PROX:INTRON	TRAPPC9	ENSG00000167632.18	ENST00000648948.2:ENST00000438773.4:ENST00000520857.5	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	2.29425	3.563135	4.83202	0.0518406	0.00525002	0.176696	0.0633615
chr17	675580	675680	6698172	0	-	0.53	(0.515,0.57]	chr17	655351	8	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	VPS53	ENSG00000141252.21	ENST00000437048.7:ENST00000681160.1:ENST00000680465.1:ENST00000681661.1:ENST00000680872.1:ENST00000681317.1:ENST00000681510.1:ENST00000680641.1:ENST00000681946.1:ENST00000576149.5:ENST00000681917.1:ENST00000681096.1:ENST00000573028.5:ENST00000571805.6:ENST00000681478.1:ENST00000680128.1:ENST00000291074.10:ENST00000389040.9:ENST00000401468.7:ENST00000680704.1:ENST00000572334.7:ENST00000680069.1:ENST00000681902.1:ENST00000679361.1:ENST00000681154.1:ENST00000680958.1:ENST00000680274.1:ENST00000681229.1:ENST00000681035.1:ENST00000681133.1:ENST00000679680.1:ENST00000576019.6:ENST00000679961.1:ENST00000681120.1:ENST00000575207.6:ENST00000680660.1:ENST00000680970.1:ENST00000680241.1:ENST00000681423.1:ENST00000572259.2:ENST00000575100.2:ENST00000681295.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	32	2	2.12971	3.56303	4.99635	0.0757903	8.06602e-4	0.194427	0.0258804
chr10	110876369	110876469	4521143	0	+	0.24	[0,0.28]	chr10	417120	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PDCD4	ENSG00000150593.18	ENST00000393104.6:ENST00000467574.5:ENST00000483670.5:ENST00000280154.12:ENST00000444997.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	40	2	2.36637	3.563005	4.75964	0.0500615	0.0232081	0.17488	0.118148
chr11	87190777	87190876	4844344	0	+	0.191919	[0,0.28]	chr11	451862	330	INTRON	INTRON	TMEM135	ENSG00000166575.17	ENST00000340353.11:ENST00000305494.6:ENST00000532959.5:ENST00000525018.5	protein_coding	protein_coding	protein_coding	protein_coding	1	40	2	2.36637	3.563005	4.75964	0.0500615	0.0232081	0.17488	0.118148
chr12	28196173	28196272	5100326	0	+	0.252525	[0,0.28]	chr12	481898	45	INTRON	INTRON	CCDC91	ENSG00000123106.11	ENST00000540794.5:ENST00000538586.5:ENST00000536154.5:ENST00000535520.5:ENST00000539107.5:ENST00000544649.5:ENST00000545336.5:ENST00000536442.6:ENST00000544780.5:ENST00000543534.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	40	2	2.36637	3.563005	4.75964	0.0500615	0.0232081	0.17488	0.118148
chr19	34191586	34191686	7050994	0	+	0.42	(0.408,0.44]	chr19	703187	185	INTRON	INTRON	LSM14A	ENSG00000257103.9	ENST00000544216.8:ENST00000589878.5:ENST00000540746.6:ENST00000433627.9:ENST00000586157.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	72	2	3.33067	3.563005	3.79534	0.0024459	2.17043e-4	0.0445752	0.0129235
chr4	105413828	105413927	2216074	0	-	0.262626	[0,0.28]	chr4	217232	75	INTRON	INTRON	PPA2	ENSG00000138777.20	ENST00000341695.10:ENST00000348706.9:ENST00000509031.5:ENST00000351450.10:ENST00000354147.7:ENST00000432483.6:ENST00000515567.5:ENST00000503171.5:ENST00000510015.5:ENST00000509426.5:ENST00000508518.5:ENST00000514209.5:ENST00000506815.5:ENST00000457404.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	40	2	2.36637	3.563005	4.75964	0.0500615	0.0232081	0.17488	0.118148
chr7	101930153	101930253	3367494	0	+	0.27	[0,0.28]	chr7	315225	136	INTRON	INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000497815.5:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000558469.5:ENST00000560541.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	40	2	2.36637	3.563005	4.75964	0.0500615	0.0232081	0.17488	0.118148
chr7	107076704	107076804	3377487	0	+	0.2	[0,0.28]	chr7	316248	60	INTRON	INTRON	PRKAR2B	ENSG00000005249.13	ENST00000265717.5:ENST00000393613.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	40	2	2.36637	3.563005	4.75964	0.0500615	0.0232081	0.17488	0.118148
chr9	100024414	100024513	4307896	0	-	0.272727	[0,0.28]	chr9	395787	18	INTRON	INTRON	ERP44	ENSG00000023318.9	ENST00000262455.7:ENST00000685319.1:ENST00000691188.1:ENST00000687025.1:ENST00000687093.1:ENST00000690739.1:ENST00000687017.1:ENST00000690317.1:ENST00000691823.1:ENST00000686275.1:ENST00000689406.1:ENST00000684842.1:ENST00000688230.1:ENST00000685432.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	40	2	2.36637	3.563005	4.75964	0.0500615	0.0232081	0.17488	0.118148
chr12	106958869	106958969	5218537	0	+	0.41	(0.408,0.44]	chr12	493939	2	SS3_PROX	SS3_PROX:INTRON	TMEM263	ENSG00000151135.10	ENST00000548125.5:ENST00000547242.5:ENST00000551489.5:ENST00000550344.5:ENST00000280756.9:ENST00000547081.1	protein_coding	protein_coding	protein_coding	protein_coding	2	44	2	2.44674	3.56284	4.67894	0.0087648	0.00868283	0.0842798	0.0788605
chr3	49943580	49943680	1422988	0	+	0.42	(0.408,0.44]	chr3	149956	21	INTRON	INTRON	RBM6	ENSG00000004534.15	ENST00000442092.5:ENST00000443081.5:ENST00000419610.5:ENST00000441115.5:ENST00000493652.1:ENST00000422955.5:ENST00000454079.5:ENST00000266022.9:ENST00000425608.5:ENST00000434592.5:ENST00000433811.1:ENST00000491874.5:ENST00000488807.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	44	2	2.44674	3.56284	4.67894	0.0087648	0.00868283	0.0842798	0.0788605
chr5	181058251	181058351	2563030	0	+	0.43	(0.408,0.44]	chr5	245230	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	BTNL9	ENSG00000165810.17	ENST00000327705.14:ENST00000512570.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	44	2	2.44674	3.56284	4.67894	0.0087648	0.00868283	0.0842798	0.0788605
chr1	1741780	1741878	361398	0	-	0.571429	(0.57,1]	chr1	42138	17	INTRON	INTRON	SLC35E2A	ENSG00000215790.8	ENST00000647043.1:ENST00000246421.4	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	1	22	2	2.52405	3.56283	4.60161	0.0263139	0.00142229	0.133676	0.0340865
chr1	11665235	11665332	25144	0	+	0.628866	(0.57,1]	chr1	2706	1	INTRON	INTRON	FBXO6	ENSG00000116663.11	ENST00000376753.9:ENST00000474239.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	22	2	2.52405	3.56283	4.60161	0.0263139	0.00142229	0.133676	0.0340865
chr11	75563579	75563674	4832076	0	+	0.578947	(0.57,1]	chr11	450869	17	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SERPINH1	ENSG00000149257.16	ENST00000533603.5:ENST00000526242.1:ENST00000649490.1:ENST00000526397.5:ENST00000358171.8:ENST00000530284.5:ENST00000525492.5:ENST00000529643.1:ENST00000532356.5:ENST00000524558.5:ENST00000533449.6:ENST00000528990.1:ENST00000525611.5:ENST00000528760.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	22	2	2.52405	3.56283	4.60161	0.0263139	0.00142229	0.133676	0.0340865
chr17	37407696	37407796	6603629	0	+	0.58	(0.57,1]	chr17	642742	2	SS5_PROX	SS5_PROX:INTRON	TADA2A	ENSG00000276234.5	ENST00000615182.5:ENST00000614112.4:ENST00000610834.4:ENST00000620628.4:ENST00000614122.4:ENST00000620838.4:ENST00000620367.4:ENST00000612272.4:ENST00000621780.1:ENST00000615328.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	22	2	2.52405	3.56283	4.60161	0.0263139	0.00142229	0.133676	0.0340865
chr19	18511622	18511722	7152910	0	-	0.58	(0.57,1]	chr19	722886	358	INTRON	INTRON	ELL	ENSG00000105656.13	ENST00000262809.9:ENST00000594635.6:ENST00000596915.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	22	2	2.52405	3.56283	4.60161	0.0263139	0.00142229	0.133676	0.0340865
chr6	166954889	166954986	3264305	0	-	0.57732000000000006	(0.57,1]	chr6	303043	25	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	ENSG00000249141:RNASET2	ENSG00000249141.1:ENSG00000026297.17	ENST00000507747.1:ENST00000508775.6:ENST00000683770.1:ENST00000611959.2:ENST00000620173.5:ENST00000682774.1:ENST00000684236.1:ENST00000683968.1:ENST00000366855.10:ENST00000421787.5:ENST00000476238.6:ENST00000028008.9:ENST00000478180.6:ENST00000358165.7:ENST00000683158.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	22	2	2.52405	3.56283	4.60161	0.0263139	0.00142229	0.133676	0.0340865
chr7	111201612	111201712	3620498	0	-	0.58	(0.57,1]	chr7	337093	2377	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	22	2	2.52405	3.56283	4.60161	0.0263139	0.00142229	0.133676	0.0340865
chrX	3872791	3872891	7747317	0	-	0.58	(0.57,1]	chrX	793130	46	INTRON	INTRON	ENSG00000285756	ENSG00000285756.2	ENST00000648217.1:ENST00000650456.1:ENST00000650538.1:ENST00000438107.1	lncRNA	lncRNA	lncRNA	lncRNA	1	22	2	2.52405	3.56283	4.60161	0.0263139	0.00142229	0.133676	0.0340865
chr16	89469067	89469167	6543387	0	-	0.51	(0.476,0.515]	chr16	634281	374	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	44	2	2.43242	3.56281	4.6932	0.0091895	0.00753088	0.0855292	0.074841
chr16	21438148	21438248	6460696	0	-	0.4	(0.378,0.408]	chr16	623222	67	INTRON	INTRON	NPIPB3	ENSG00000169246.16	ENST00000521589.5:ENST00000545358.5:ENST00000543368.1:ENST00000544154.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	81	2	1.23177	3.56273	5.89369	0.0747101	2.33849e-5	0.192652	0.00378116
chr7	157176222	157176320	3454317	0	+	0.357143	(0.35,0.378]	chr7	322924	8	INTRON	INTRON	UBE3C	ENSG00000009335.18	ENST00000611269.4:ENST00000348165.10:ENST00000389103.4	protein_coding	protein_coding	protein_coding	protein_coding	5	77	2	1.44343	3.5625400000000003	5.68165	0.0514088	9.36553e-5	0.158464	0.00811835
chr15	74924170	74924270	6222874	0	-	0.37	(0.35,0.378]	chr15	594270	4	SS3_PROX	SS3_PROX:INTRON	COX5A	ENSG00000178741.12	ENST00000322347.11:ENST00000567270.5:ENST00000562233.5:ENST00000568783.5:ENST00000568517.1:ENST00000564811.1	protein_coding	protein_coding	protein_coding	protein_coding	1	37	2	2.1617	3.5625	4.9633	0.0771502	0.00198929	0.196285	0.0411469
chr20	16460538	16460638	7318413	0	-	0.37	(0.35,0.378]	chr20	745061	302	INTRON	INTRON	KIF16B	ENSG00000089177.19	ENST00000354981.7:ENST00000636835.1:ENST00000408042.5	protein_coding	protein_coding	protein_coding	protein_coding	1	37	2	2.1617	3.5625	4.9633	0.0771502	0.00198929	0.196285	0.0411469
chr7	32575070	32575166	3304043	0	+	0.364583	(0.35,0.378]	chr7	306826	13	INTRON	INTRON	AVL9	ENSG00000105778.20	ENST00000318709.9:ENST00000409301.5:ENST00000446718.1	protein_coding	protein_coding	protein_coding	protein_coding	1	37	2	2.1617	3.5625	4.9633	0.0771502	0.00198929	0.196285	0.0411469
chr8	105374885	105374984	3837805	0	+	0.424242	(0.408,0.44]	chr8	354037	159	INTRON	INTRON	ZFPM2	ENSG00000169946.14	ENST00000518180.1:ENST00000407775.7:ENST00000520492.5:ENST00000520027.5:ENST00000524235.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	73	2	3.15414	3.56244	3.97074	0.00469847	8.66152e-5	0.0600108	0.00783027
chrX	73977658	73977757	7682435	0	+	0.434343	(0.408,0.44]	chrX	786638	93	INTRON	INTRON	JPX	ENSG00000225470.8	ENST00000664637.1:ENST00000639185.1:ENST00000655090.1:ENST00000640437.1:ENST00000660546.1:ENST00000667886.1:ENST00000660840.1:ENST00000657179.1:ENST00000670506.1:ENST00000657910.1:ENST00000662120.1:ENST00000671207.1:ENST00000659254.1:ENST00000656624.1:ENST00000667573.1:ENST00000660856.1:ENST00000660836.1:ENST00000668590.1:ENST00000658649.1:ENST00000414209.6:ENST00000654137.1:ENST00000670994.1:ENST00000602772.5:ENST00000655879.1:ENST00000657372.1:ENST00000657096.1:ENST00000602985.6:ENST00000670685.1:ENST00000670503.1:ENST00000663027.1:ENST00000654995.1:ENST00000602895.6:ENST00000654374.1:ENST00000660087.1:ENST00000665032.1:ENST00000671336.1:ENST00000671476.1:ENST00000667057.1:ENST00000670192.1:ENST00000670464.1:ENST00000665345.1:ENST00000661546.1:ENST00000662543.1:ENST00000602938.6:ENST00000664295.1:ENST00000654005.1:ENST00000669149.1:ENST00000659852.1:ENST00000656509.1:ENST00000602294.6:ENST00000667294.1:ENST00000663470.1:ENST00000602920.6:ENST00000671021.1:ENST00000659849.1:ENST00000667937.1:ENST00000661130.1:ENST00000654196.1:ENST00000655994.1:ENST00000659373.1:ENST00000662239.1:ENST00000670805.1:ENST00000656263.1:ENST00000653069.1:ENST00000657638.1:ENST00000653808.1:ENST00000653929.1:ENST00000653885.1:ENST00000659023.1:ENST00000602546.5:ENST00000659622.1:ENST00000671518.1:ENST00000670408.1	lncRNA	lncRNA	lncRNA	lncRNA	2	44	2	1.93243	3.562225	5.19202	0.0441194	0.0016671	0.162255	0.0369207
chr9	92286137	92286236	4287269	0	-	0.484848	(0.476,0.515]	chr9	394250	4	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	IARS1	ENSG00000196305.19	ENST00000375643.7:ENST00000443024.7:ENST00000447699.7:ENST00000683537.1:ENST00000684726.1:ENST00000683192.1:ENST00000683565.1:ENST00000682756.1:ENST00000684542.1:ENST00000683793.1:ENST00000683817.1:ENST00000682141.1:ENST00000682893.1:ENST00000684557.1:ENST00000498025.2:ENST00000682156.1:ENST00000627121.3:ENST00000683469.1:ENST00000683495.1:ENST00000682578.1:ENST00000682533.1:ENST00000472894.2:ENST00000684757.1:ENST00000684445.1:ENST00000683376.1:ENST00000683679.1:ENST00000683119.1:ENST00000490438.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	146	2	2.91808	3.56215	4.20622	4.52733e-5	4.01076e-5	0.00547142	0.00539487
chr7	6055594	6055692	3476215	0	-	0.346939	(0.32,0.35]	chr7	325245	5	INTRON	INTRON	EIF2AK1	ENSG00000086232.13	ENST00000199389.11:ENST00000431744.5:ENST00000463213.5:ENST00000446699.1:ENST00000461493.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	59	2	2.22655	3.5621150000000004	4.89768	0.00823133	0.00793135	0.0812969	0.076155
chr17	18244487	18244584	6568304	0	+	0.56701	(0.515,0.57]	chr17	638553	7	UTR3	UTR3:EXON_MRNA	LLGL1	ENSG00000131899.12	ENST00000316843.9:ENST00000479155.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	32	2	2.83501	3.5621099999999997	4.28921	0.0117686	0.00990051	0.0894475	0.0877296
chr19	19422815	19422915	7035517	0	+	0.52	(0.515,0.57]	chr19	701433	164	INTRON	INTRON	GATAD2A	ENSG00000167491.18	ENST00000494516.6:ENST00000360315.7:ENST00000609040.5:ENST00000417582.6:ENST00000683918.1:ENST00000448576.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	32	2	2.83501	3.5621099999999997	4.28921	0.0117686	0.00990051	0.0894475	0.0877296
chr1	31287956	31288056	413202	0	-	0.48	(0.476,0.515]	chr1	49797	56	INTRON	INTRON	SNRNP40	ENSG00000060688.13	ENST00000263694.9:ENST00000474025.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	134	2	2.46098	3.5620700000000003	4.66316	0.00126759	2.88507e-6	0.0330359	0.00119813
chr20	32786729	32786828	7256903	0	+	0.454545	(0.44,0.476]	chr20	737144	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DNMT3B	ENSG00000088305.19	ENST00000696232.1:ENST00000328111.6:ENST00000696231.1:ENST00000348286.6:ENST00000353855.6:ENST00000696233.1:ENST00000443239.7:ENST00000696234.1:ENST00000696235.1:ENST00000456297.6:ENST00000696236.1:ENST00000696237.1:ENST00000201963.3:ENST00000696238.1:ENST00000696239.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	154	2	3.4792	3.56206	3.64492	1.09781e-4	3.54017e-6	0.00942675	0.0012234
chr19	35276000	35276100	7054792	0	+	0.34	(0.32,0.35]	chr19	703934	1	SS5_PROX	SS5_PROX:INTRON	USF2	ENSG00000105698.16	ENST00000222305.8:ENST00000343550.9:ENST00000595068.5:ENST00000379134.7:ENST00000594064.5:ENST00000607959.5:ENST00000596380.5:ENST00000599471.5:ENST00000597671.5:ENST00000599625.1:ENST00000600341.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	76	2	1.93994	3.562045	5.18415	0.0084207	0.00333629	0.0825628	0.0512081
chr10	5686765	5686865	4384360	0	+	0.32	(0.28,0.32]	chr10	404456	12	INTRON	INTRON	TASOR2	ENSG00000108021.21	ENST00000695832.1:ENST00000328090.9:ENST00000695737.1:ENST00000695833.1:ENST00000695834.1:ENST00000695835.1:ENST00000695836.1:ENST00000473789.5:ENST00000477043.5:ENST00000496681.5:ENST00000480839.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	37	2	2.53522	3.561985	4.58875	0.0310424	0.0230574	0.143457	0.118056
chr19	29989014	29989114	7048031	0	+	0.3	(0.28,0.32]	chr19	702695	22	INTRON	INTRON	URI1	ENSG00000105176.18	ENST00000360605.8:ENST00000574233.5:ENST00000392271.6:ENST00000574110.5:ENST00000574666.5:ENST00000576442.1:ENST00000570704.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	37	2	2.53522	3.561985	4.58875	0.0310424	0.0230574	0.143457	0.118056
chr2	161346318	161346418	901491	0	+	0.32	(0.28,0.32]	chr2	99704	271	INTRON	INTRON	PSMD14	ENSG00000115233.12	ENST00000409682.8:ENST00000437630.1	protein_coding	protein_coding	protein_coding	protein_coding	1	37	2	2.53522	3.561985	4.58875	0.0310424	0.0230574	0.143457	0.118056
chr2	172593943	172594042	920288	0	+	0.30303	(0.28,0.32]	chr2	101386	5	INTRON	INTRON	PDK1	ENSG00000152256.14	ENST00000392571.6:ENST00000410055.5:ENST00000282077.8:ENST00000466437.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	37	2	2.53522	3.561985	4.58875	0.0310424	0.0230574	0.143457	0.118056
chr3	149032572	149032672	1840437	0	-	0.3	(0.28,0.32]	chr3	185070	2	SS3_PROX	SS3_PROX:INTRON	HLTF	ENSG00000071794.16	ENST00000310053.10:ENST00000465259.5:ENST00000392912.6:ENST00000494055.5	protein_coding	protein_coding	protein_coding	protein_coding	1	37	2	2.53522	3.561985	4.58875	0.0310424	0.0230574	0.143457	0.118056
chr5	146133675	146133770	2746894	0	-	0.315789	(0.28,0.32]	chr5	258790	2	INTRON	INTRON	LARS1	ENSG00000133706.19	ENST00000674174.1:ENST00000674170.1:ENST00000674479.1:ENST00000674309.1:ENST00000674218.1:ENST00000674467.1:ENST00000674290.1:ENST00000674447.1:ENST00000674270.1:ENST00000674383.1:ENST00000674191.1:ENST00000674158.1:ENST00000506231.6:ENST00000674471.1:ENST00000674181.1:ENST00000394434.7:ENST00000674398.1:ENST00000674277.1:ENST00000274562.13:ENST00000510191.5:ENST00000504323.6:ENST00000674310.1:ENST00000512412.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	37	2	2.53522	3.561985	4.58875	0.0310424	0.0230574	0.143457	0.118056
chr10	3150647	3150746	4542854	0	-	0.515152	(0.476,0.515]	chr10	419411	5	INTRON	INTRON	PITRM1	ENSG00000107959.17	ENST00000224949.9:ENST00000380989.6:ENST00000451104.6:ENST00000677384.1:ENST00000679309.1:ENST00000678403.1:ENST00000676719.1:ENST00000380994.6:ENST00000678855.1:ENST00000678436.1:ENST00000677817.1:ENST00000677305.1:ENST00000678986.1:ENST00000677001.1:ENST00000678987.1:ENST00000678601.1:ENST00000676953.1:ENST00000676519.1:ENST00000678050.1:ENST00000678370.1:ENST00000677922.1:ENST00000678441.1:ENST00000679134.1:ENST00000677598.1:ENST00000678539.1:ENST00000679210.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	56	2	1.58335	3.56198	5.54061	0.0640461	1.30462e-4	0.177882	0.00983066
chr2	174552273	174552373	922956	0	+	0.36	(0.35,0.378]	chr2	101635	44	INTRON	INTRON	ENSG00000236449	ENSG00000236449.2	ENST00000442996.1:ENST00000657063.1:ENST00000412835.1	lncRNA	lncRNA	lncRNA	lncRNA	1	37	2	2.53856	3.561965	4.58537	0.0326077	0.00703328	0.133687	0.0754576
chr6	3074302	3074400	2788169	0	+	0.367347	(0.35,0.378]	chr6	263298	1	INTRON	INTRON	RIPK1	ENSG00000137275.16	ENST00000678809.1:ENST00000678874.1:ENST00000380409.3:ENST00000677799.1:ENST00000677261.1:ENST00000676758.1:ENST00000676995.1:ENST00000679118.1:ENST00000479389.1:ENST00000676591.1:ENST00000259808.9:ENST00000676618.1:ENST00000678084.1:ENST00000677361.1:ENST00000676965.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	37	2	2.53856	3.561965	4.58537	0.0326077	0.00703328	0.133687	0.0754576
chr7	5417267	5417367	3472018	0	-	0.5	(0.476,0.515]	chr7	324678	100	INTRON	INTRON	TNRC18	ENSG00000182095.15	ENST00000399537.8:ENST00000430969.6:ENST00000399434.2	protein_coding	protein_coding	protein_coding	protein_coding	2	73	2	3.35059	3.561965	3.77334	0.00171515	3.52709e-4	0.0381936	0.0174637
chr17	39442556	39442654	6767073	0	-	0.479592	(0.476,0.515]	chr17	665589	15	INTRON	INTRON	MED1	ENSG00000125686.12	ENST00000394287.7:ENST00000300651.11:ENST00000577831.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	33	2	2.87879	3.5618999999999996	4.24501	0.0247713	0.00999149	0.12011	0.0879541
chr6	20585049	20585149	2828891	0	+	0.5	(0.476,0.515]	chr6	265649	255	INTRON	INTRON	CDKAL1	ENSG00000145996.11	ENST00000274695.8:ENST00000378610.1	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	2.87879	3.5618999999999996	4.24501	0.0247713	0.00999149	0.12011	0.0879541
chr7	129613121	129613221	3412135	0	+	0.49	(0.476,0.515]	chr7	319009	9	INTRON	INTRON	NRF1	ENSG00000106459.15	ENST00000393232.6:ENST00000477428.5:ENST00000454688.5:ENST00000223190.8:ENST00000311967.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	33	2	2.87879	3.5618999999999996	4.24501	0.0247713	0.00999149	0.12011	0.0879541
chrX	153932882	153932982	7911781	0	-	0.48	(0.476,0.515]	chrX	805329	4	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	ARHGAP4:NAA10	ENSG00000089820.16:ENSG00000102030.16	ENST00000494813.5:ENST00000464845.6:ENST00000370015.8:ENST00000393712.7:ENST00000370009.5:ENST00000466877.5:ENST00000484950.5:ENST00000460996.5:ENST00000370011.7:ENST00000432089.1:ENST00000477750.5:ENST00000393710.7:ENST00000477882.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	33	2	2.87879	3.5618999999999996	4.24501	0.0247713	0.00999149	0.12011	0.0879541
chr10	17669294	17669393	4399518	0	+	0.282828	(0.28,0.32]	chr10	406156	84	INTRON	INTRON	STAM	ENSG00000136738.15	ENST00000377524.8:ENST00000377500.1:ENST00000445846.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	37	2	2.46018	3.561885	4.66359	0.0375904	0.0193496	0.156054	0.108861
chr14	34850370	34850470	5868194	0	-	0.3	(0.28,0.32]	chr14	557409	213	INTRON	INTRON	BAZ1A	ENSG00000198604.11	ENST00000358716.8:ENST00000360310.6:ENST00000382422.6:ENST00000553573.1:ENST00000553853.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	37	2	2.46018	3.561885	4.66359	0.0375904	0.0193496	0.156054	0.108861
chr17	62530598	62530697	6653404	0	+	0.30303	(0.28,0.32]	chr17	649344	59	INTRON	INTRON	TLK2	ENSG00000146872.19	ENST00000582809.5:ENST00000684213.1:ENST00000583843.5:ENST00000582195.6:ENST00000682085.1:ENST00000580705.5:ENST00000346027.10:ENST00000326270.13:ENST00000682203.1:ENST00000343388.11:ENST00000683536.1:ENST00000684440.1:ENST00000684772.1:ENST00000682274.1:ENST00000682827.1:ENST00000682075.1:ENST00000683104.1:ENST00000684012.1:ENST00000581041.5:ENST00000684553.1:ENST00000683737.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	37	2	2.46018	3.561885	4.66359	0.0375904	0.0193496	0.156054	0.108861
chr8	28979470	28979570	3725751	0	+	0.3	(0.28,0.32]	chr8	346270	86	INTRON	INTRON	HMBOX1	ENSG00000147421.18	ENST00000287701.15:ENST00000558662.5:ENST00000397358.7:ENST00000560599.5:ENST00000523613.5:ENST00000521516.5:ENST00000519047.5:ENST00000355231.9:ENST00000524238.3:ENST00000518080.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	37	2	2.46018	3.561885	4.66359	0.0375904	0.0193496	0.156054	0.108861
chrX	18342293	18342393	7770935	0	-	0.3	(0.28,0.32]	chrX	794213	78	INTRON	INTRON	SCML2	ENSG00000102098.19	ENST00000251900.9	protein_coding	protein_coding	protein_coding	protein_coding	1	37	2	2.46018	3.561885	4.66359	0.0375904	0.0193496	0.156054	0.108861
chr1	23066171	23066271	44238	0	+	0.4	(0.378,0.408]	chr1	5299	1	SS5_PROX	SS5_PROX:INTRON	KDM1A	ENSG00000004487.18	ENST00000692214.1:ENST00000686934.1:ENST00000689853.1:ENST00000465864.2:ENST00000691256.1:ENST00000688122.1:ENST00000692056.1:ENST00000692853.1:ENST00000689366.1:ENST00000686270.1:ENST00000685102.1:ENST00000690627.1:ENST00000686771.1:ENST00000692209.1:ENST00000686339.1:ENST00000691813.1:ENST00000693156.1:ENST00000688235.1:ENST00000692975.1:ENST00000687202.1:ENST00000691682.1:ENST00000691404.1:ENST00000691694.1:ENST00000688680.1:ENST00000356634.7:ENST00000400181.9:ENST00000689677.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	33	2	2.71183	3.56176	4.41169	0.0199606	0.0170789	0.110899	0.109608
chr1	108589765	108589865	177559	0	+	0.38	(0.378,0.408]	chr1	19283	288	INTRON	INTRON	FAM102B	ENSG00000162636.16	ENST00000405454.1:ENST00000370035.8	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	2.71183	3.56176	4.41169	0.0199606	0.0170789	0.110899	0.109608
chr15	64297524	64297624	6204240	0	-	0.39	(0.378,0.408]	chr15	591743	313	INTRON	INTRON	CSNK1G1:ENSG00000259316	ENSG00000169118.18:ENSG00000259316.12	ENST00000303052.13:ENST00000607537.6:ENST00000561349.6:ENST00000635142.1:ENST00000634654.1:ENST00000634811.1:ENST00000606225.1:ENST00000606793.3:ENST00000634251.1:ENST00000634847.3:ENST00000635324.1:ENST00000635270.1:ENST00000635529.1:ENST00000634318.1:ENST00000635514.1:ENST00000635359.1:ENST00000635160.1:ENST00000635704.1:ENST00000634529.1:ENST00000635511.1:ENST00000635605.1:ENST00000635593.1:ENST00000634259.2:ENST00000560278.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	33	2	2.71183	3.56176	4.41169	0.0199606	0.0170789	0.110899	0.109608
chr17	75218406	75218506	6674394	0	+	0.4	(0.378,0.408]	chr17	651380	1	SS5_PROX	SS5_PROX:INTRON	NUP85	ENSG00000125450.11	ENST00000245544.9:ENST00000583948.5:ENST00000579324.5:ENST00000449421.6:ENST00000581104.5:ENST00000579298.5:ENST00000578830.5:ENST00000583877.5:ENST00000577561.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	33	2	2.71183	3.56176	4.41169	0.0199606	0.0170789	0.110899	0.109608
chr7	2793519	2793619	3468942	0	-	0.4	(0.378,0.408]	chr7	324339	303	INTRON	INTRON	GNA12	ENSG00000146535.14	ENST00000275364.8:ENST00000407904.7:ENST00000471281.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	33	2	2.71183	3.56176	4.41169	0.0199606	0.0170789	0.110899	0.109608
chr7	24683485	24683584	3291836	0	+	0.393939	(0.378,0.408]	chr7	305797	26	INTRON	INTRON	PALS2	ENSG00000105926.16	ENST00000409761.5:ENST00000222644.10:ENST00000396475.6:ENST00000464384.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	33	2	2.71183	3.56176	4.41169	0.0199606	0.0170789	0.110899	0.109608
chr7	100092727	100092795	3585270	0	-	0.397059	(0.378,0.408]	chr7	334089	1	UTR3	UTR3:EXON_MRNA	MCM7	ENSG00000166508.18	ENST00000303887.10:ENST00000489841.5:ENST00000621318.4:ENST00000354230.7:ENST00000343023.10:ENST00000485286.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	33	2	2.71183	3.56176	4.41169	0.0199606	0.0170789	0.110899	0.109608
chr2	152686892	152686991	1246211	0	-	0.272727	[0,0.28]	chr2	132338	52	INTRON	INTRON	PRPF40A	ENSG00000196504.20	ENST00000410080.8:ENST00000545856.8:ENST00000696382.1:ENST00000696381.1:ENST00000354363.11:ENST00000493468.7:ENST00000448428.2:ENST00000467114.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	44	2	2.20927	3.561705	4.91414	0.0794763	0.0064519	0.19979	0.0730725
chr22	16787601	16787701	7546275	0	-	0.21	[0,0.28]	chr22	771315	28	INTRON	INTRON	XKR3	ENSG00000172967.8	ENST00000331428.5:ENST00000684488.1	protein_coding	protein_coding	protein_coding	protein_coding	1	44	2	2.20927	3.561705	4.91414	0.0794763	0.0064519	0.19979	0.0730725
chr6	36914623	36914693	2855097	0	+	0.528571	(0.515,0.57]	chr6	269893	2	CDS	CDS:EXON_MRNA	C6orf89	ENSG00000198663.17	ENST00000359359.6:ENST00000355190.7:ENST00000373685.1:ENST00000480824.7	protein_coding	protein_coding	protein_coding	protein_coding	9	80	2	1.13587	3.561705	5.98754	0.0597349	1.57707e-5	0.189982	0.00318411
chr19	18506724	18506824	7152861	0	-	0.48	(0.476,0.515]	chr19	722886	309	INTRON	INTRON	ELL	ENSG00000105656.13	ENST00000262809.9:ENST00000594635.6:ENST00000596915.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	58	2	2.59304	3.561635	4.53023	0.0119748	0.00158794	0.0899583	0.0367961
chr21	39254254	39254353	7464932	0	-	0.242424	[0,0.28]	chr21	760483	30	INTRON	INTRON	BRWD1	ENSG00000185658.14	ENST00000333229.6:ENST00000342449.8:ENST00000446924.5:ENST00000380800.7:ENST00000430093.5:ENST00000445245.5:ENST00000445668.5:ENST00000412604.1:ENST00000455867.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	165	2	3.2001	3.56158	3.92306	5.0483e-4	1.42925e-4	0.0208144	0.0103609
chr16	85623456	85623555	6416071	0	+	0.606061	(0.57,1]	chr16	615481	97	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1:ENST00000405402.6:ENST00000411612.5:ENST00000253458.12:ENST00000393243.5	protein_coding	protein_coding	protein_coding	protein_coding	2	40	2	3.42323	3.561545	3.69986	8.58388e-4	1.9698e-4	0.0267428	0.0122531
chr19	7964897	7964996	7130396	0	-	0.585859	(0.57,1]	chr19	718359	7	INTRON	INTRON	ELAVL1	ENSG00000066044.15	ENST00000407627.7:ENST00000596154.5:ENST00000596459.5:ENST00000593807.1	protein_coding	protein_coding	protein_coding	protein_coding	2	40	2	3.42323	3.561545	3.69986	8.58388e-4	1.9698e-4	0.0267428	0.0122531
chr1	184946703	184946803	602775	0	-	0.39	(0.378,0.408]	chr1	71774	470	INTRON	INTRON	NIBAN1	ENSG00000135842.17	ENST00000367511.4	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	2.13703	3.5614500000000002	4.98587	0.0797592	0.00152268	0.19979	0.0360297
chr17	59169047	59169147	6640082	0	+	0.4	(0.378,0.408]	chr17	648290	50	INTRON	INTRON	PRR11	ENSG00000068489.13	ENST00000578777.5:ENST00000577457.1:ENST00000262293.9:ENST00000578542.5:ENST00000582995.5:ENST00000581182.1:ENST00000580177.5:ENST00000614081.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	36	2	2.13703	3.5614500000000002	4.98587	0.0797592	0.00152268	0.19979	0.0360297
chr7	149148616	149148716	3444975	0	+	0.39	(0.378,0.408]	chr7	321320	1	SS5_PROX	SS5_PROX:INTRON	ZNF398	ENSG00000197024.9	ENST00000426851.6:ENST00000485111.5:ENST00000475153.6:ENST00000483892.5:ENST00000491174.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	36	2	2.13703	3.5614500000000002	4.98587	0.0797592	0.00152268	0.19979	0.0360297
chr1	108265072	108265171	518247	0	-	0.424242	(0.408,0.44]	chr1	60843	19	INTRON	INTRON	ENSG00000238122	ENSG00000238122.1	ENST00000438965.1	lncRNA	lncRNA	lncRNA	lncRNA	1	33	2	2.89193	3.561445	4.23096	0.0278028	0.00950364	0.123904	0.0863579
chr1	114403083	114403183	526798	0	-	0.42	(0.408,0.44]	chr1	62067	2	SS3_PROX	SS3_PROX:INTRON	TRIM33	ENSG00000197323.12	ENST00000358465.7:ENST00000369543.6:ENST00000448034.5	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	2.89193	3.561445	4.23096	0.0278028	0.00950364	0.123904	0.0863579
chr1	167982102	167982202	248947	0	+	0.42	(0.408,0.44]	chr1	29564	67	INTRON	INTRON	DCAF6	ENSG00000143164.16	ENST00000450548.5:ENST00000470919.5:ENST00000432587.6:ENST00000367843.7:ENST00000470721.5:ENST00000367840.4:ENST00000312263.10:ENST00000455334.5:ENST00000491067.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	33	2	2.89193	3.561445	4.23096	0.0278028	0.00950364	0.123904	0.0863579
chr17	46124336	46124436	6784179	0	-	0.43	(0.408,0.44]	chr17	669216	31	INTRON	INTRON	KANSL1	ENSG00000120071.15	ENST00000574590.6:ENST00000572904.6:ENST00000432791.7:ENST00000575318.6:ENST00000638275.1:ENST00000262419.10:ENST00000648792.1:ENST00000639531.1:ENST00000639150.1:ENST00000639853.1:ENST00000571698.2:ENST00000639375.1:ENST00000638269.1:ENST00000576248.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	33	2	2.89193	3.561445	4.23096	0.0278028	0.00950364	0.123904	0.0863579
chr5	138802939	138803039	2497805	0	+	0.42	(0.408,0.44]	chr5	238725	115	INTRON	INTRON	CTNNA1	ENSG00000044115.21	ENST00000517980.5:ENST00000522227.5:ENST00000523912.5:ENST00000627109.2:ENST00000521724.5:ENST00000302763.12:ENST00000518910.5:ENST00000519309.5:ENST00000519113.5:ENST00000520158.5:ENST00000518825.5:ENST00000518585.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	33	2	2.89193	3.561445	4.23096	0.0278028	0.00950364	0.123904	0.0863579
chrX	123661347	123661447	7878328	0	-	0.44	(0.408,0.44]	chrX	802527	156	INTRON	INTRON	THOC2	ENSG00000125676.20	ENST00000245838.13:ENST00000355725.8:ENST00000491737.5	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	2.89193	3.561445	4.23096	0.0278028	0.00950364	0.123904	0.0863579
chr16	88629534	88629624	6418874	0	+	0.511111	(0.476,0.515]	chr16	615865	3	INTRON	INTRON	ZC3H18	ENSG00000158545.16	ENST00000301011.10:ENST00000452588.6:ENST00000564341.1:ENST00000566496.5:ENST00000565583.1:ENST00000566317.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	71	2	3.41728	3.5614049999999997	3.70553	0.00165726	3.44823e-4	0.0369207	0.0165103
chr22	31425443	31425539	7503273	0	+	0.510417	(0.476,0.515]	chr22	765625	17	INTRON	INTRON	DRG1	ENSG00000185721.13	ENST00000331457.9	protein_coding	protein_coding	protein_coding	protein_coding	2	71	2	3.41728	3.5614049999999997	3.70553	0.00165726	3.44823e-4	0.0369207	0.0165103
chr17	48047468	48047565	6790354	0	-	0.402062	(0.378,0.408]	chr17	669873	25	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NFE2L1-DT	ENSG00000263412.2	ENST00000578660.1:ENST00000692079.1:ENST00000685615.1:ENST00000690851.1:ENST00000584428.2:ENST00000693523.1:ENST00000689902.1:ENST00000693323.1:ENST00000693586.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	1	33	2	2.45932	3.56135	4.66338	0.0346754	0.0103469	0.148144	0.0850389
chr17	61839933	61840033	6808698	0	-	0.39	(0.378,0.408]	chr17	672605	308	INTRON	INTRON	BRIP1	ENSG00000136492.10	ENST00000259008.7:ENST00000682755.1:ENST00000682453.1:ENST00000683039.1:ENST00000682989.1:ENST00000682589.1:ENST00000683235.1:ENST00000682477.1:ENST00000684584.1:ENST00000577598.5:ENST00000682066.1:ENST00000584322.2:ENST00000683381.1:ENST00000579028.2:ENST00000682611.1:ENST00000683692.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	33	2	2.45932	3.56135	4.66338	0.0346754	0.0103469	0.148144	0.0850389
chr19	19290589	19290689	7154394	0	-	0.39	(0.378,0.408]	chr19	723229	92	INTRON	INTRON	SUGP1	ENSG00000105705.16	ENST00000589144.5:ENST00000247001.10:ENST00000588731.6:ENST00000591007.6:ENST00000587119.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	33	2	2.45932	3.56135	4.66338	0.0346754	0.0103469	0.148144	0.0850389
chr22	41829687	41829786	7525972	0	+	0.393939	(0.378,0.408]	chr22	769348	40	UTR3	UTR3:EXON_MRNA	CCDC134	ENSG00000100147.14	ENST00000255784.6	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	2.45932	3.56135	4.66338	0.0346754	0.0103469	0.148144	0.0850389
chr6	27402332	27402431	2838773	0	+	0.393939	(0.378,0.408]	chr6	266405	10	UTR3	UTR3:EXON_MRNA	ZNF391	ENSG00000124613.9	ENST00000244576.9	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	2.45932	3.56135	4.66338	0.0346754	0.0103469	0.148144	0.0850389
chrX	111716752	111716852	7702384	0	+	0.39	(0.378,0.408]	chrX	788257	4	SS3_PROX	SS3_PROX:INTRON	ALG13	ENSG00000101901.12	ENST00000394780.8:ENST00000251943.8:ENST00000610588.4:ENST00000621367.4:ENST00000624161.3:ENST00000636363.1:ENST00000495283.5:ENST00000623144.3:ENST00000470971.5:ENST00000623148.3:ENST00000436609.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	33	2	2.45932	3.56135	4.66338	0.0346754	0.0103469	0.148144	0.0850389
chrX	20233057	20233157	7773066	0	-	0.49	(0.476,0.515]	chrX	794562	142	INTRON	INTRON	RPS6KA3	ENSG00000177189.14	ENST00000379565.9:ENST00000643085.1:ENST00000645270.1:ENST00000643402.1:ENST00000644368.1:ENST00000647265.1:ENST00000645268.1:ENST00000643073.1:ENST00000646610.1:ENST00000643337.1:ENST00000642835.1:ENST00000644893.1:ENST00000438357.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	47	2	1.72558	3.561335	5.39709	0.0767648	2.55871e-4	0.196164	0.0142249
chr6	10926739	10926835	2812160	0	+	0.4375	(0.408,0.44]	chr6	264632	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SYCP2L	ENSG00000153157.13	ENST00000341041.8:ENST00000283141.11:ENST00000543878.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	37	2	2.89795	3.56121	4.22447	0.0161655	0.0110735	0.109464	0.0873897
chr12	110386126	110386226	5409015	0	-	0.33	(0.32,0.35]	chr12	516434	4	SS5_PROX	SS5_PROX:INTRON	ANAPC7	ENSG00000196510.14	ENST00000455511.9:ENST00000450008.3:ENST00000548234.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	52	2	1.88909	3.5611800000000002	5.23327	0.0553737	9.33826e-4	0.165463	0.0278746
chr1	1656273	1656369	360587	0	-	0.489583	(0.476,0.515]	chr1	41954	4	INTRON	INTRON	CDK11B	ENSG00000248333.9	ENST00000341832.11:ENST00000407249.7:ENST00000340677.9:ENST00000611150.3:ENST00000615951.4:ENST00000626918.2:ENST00000629289.2:ENST00000629312.2:ENST00000341028.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	33	2	2.28264	3.56113	4.83962	0.0534132	0.00480934	0.179876	0.0602209
chr1	229611296	229611394	653962	0	-	0.5	(0.476,0.515]	chr1	77521	7	INTRON	INTRON	TAF5L	ENSG00000135801.10	ENST00000258281.6:ENST00000366675.3:ENST00000477957.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	33	2	2.28264	3.56113	4.83962	0.0534132	0.00480934	0.179876	0.0602209
chr11	68031341	68031432	4815559	0	+	0.483516	(0.476,0.515]	chr11	448607	2	SS3_PROX	SS3_PROX:SS5_PROX:INTRON	NDUFS8	ENSG00000110717.13	ENST00000432321.6:ENST00000531796.1:ENST00000453471.6:ENST00000313468.10:ENST00000526446.5:ENST00000528492.1:ENST00000532399.1:ENST00000526339.5:ENST00000531228.1:ENST00000525419.5:ENST00000525628.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	33	2	2.28264	3.56113	4.83962	0.0534132	0.00480934	0.179876	0.0602209
chr15	75388759	75388857	6223425	0	-	0.510204	(0.476,0.515]	chr15	594424	40	INTRON	INTRON	SIN3A	ENSG00000169375.16	ENST00000394947.8:ENST00000360439.8:ENST00000394949.8:ENST00000570021.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	33	2	2.28264	3.56113	4.83962	0.0534132	0.00480934	0.179876	0.0602209
chr6	33310439	33310538	3082782	0	-	0.363636	(0.35,0.378]	chr6	288387	19	INTRON	INTRON	TAPBP	ENSG00000231925.13	ENST00000434618.7:ENST00000475304.5:ENST00000489157.5:ENST00000426633.6:ENST00000480730.5:ENST00000437116.2:ENST00000467025.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	60	2	1.70607	3.56111	5.41615	0.0482819	3.21724e-4	0.153283	0.0159645
chr8	27520286	27520381	3721481	0	+	0.442105	(0.44,0.476]	chr8	345862	19	INTRON	INTRON	EPHX2	ENSG00000120915.14	ENST00000517536.5:ENST00000520623.5:ENST00000521400.6:ENST00000521780.5:ENST00000380476.7:ENST00000518379.5:ENST00000521684.1:ENST00000523326.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	48	2	2.33899	3.56096	4.78293	0.0142027	0.00292033	0.0959987	0.0494641
chr1	40189990	40190083	80252	0	+	0.354839	(0.35,0.378]	chr1	10413	4	INTRON	INTRON	RLF	ENSG00000117000.9	ENST00000372771.5	protein_coding	protein_coding	protein_coding	protein_coding	4	63	2	1.86055	3.5609	5.26125	0.0168498	0.00191117	0.11068	0.03947
chr8	102381804	102381904	4012447	0	-	0.24	[0,0.28]	chr8	367237	198	INTRON	INTRON	UBR5	ENSG00000104517.13	ENST00000520539.6:ENST00000220959.8:ENST00000521922.5	protein_coding	protein_coding	protein_coding	protein_coding	3	67	2	2.06426	3.56087	5.05748	0.0168952	0.0113653	0.110899	0.0886611
chr7	158896981	158897080	3456541	0	+	0.484848	(0.476,0.515]	chr7	323179	53	INTRON	INTRON	DYNC2I1	ENSG00000126870.16	ENST00000407559.8:ENST00000444851.5:ENST00000467220.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	47	2	2.26789	3.56084	4.85379	0.0176567	0.00234214	0.105233	0.0442989
chr1	1743257	1743356	361413	0	-	0.535354	(0.515,0.57]	chr1	42138	32	INTRON	INTRON	SLC35E2A	ENSG00000215790.8	ENST00000647043.1:ENST00000246421.4	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	1	31	2	2.43589	3.560785	4.68568	0.0370871	0.00270027	0.139194	0.0479115
chr4	57006515	57006615	1964218	0	+	0.53	(0.515,0.57]	chr4	197147	3	SS3_PROX	SS3_PROX:INTRON	POLR2B	ENSG00000047315.17	ENST00000381227.5:ENST00000431623.6:ENST00000441246.6:ENST00000314595.6	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	2.43589	3.560785	4.68568	0.0370871	0.00270027	0.139194	0.0479115
chr13	52331558	52331658	5598906	0	-	0.39	(0.378,0.408]	chr13	535281	55	INTRON	INTRON	TPTE2P2	ENSG00000272281.6	ENST00000605936.6:ENST00000606711.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	1	36	2	2.60296	3.5607499999999996	4.51854	0.0267851	0.00748824	0.123349	0.0772645
chr15	99694905	99695005	6115450	0	+	0.38	(0.378,0.408]	chr15	582113	41	INTRON	INTRON	MEF2A	ENSG00000068305.18	ENST00000354410.9:ENST00000558812.5:ENST00000685785.1:ENST00000557785.5:ENST00000557942.6:ENST00000338042.11:ENST00000449277.6:ENST00000690055.1:ENST00000691492.1:ENST00000686611.1	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	2.60296	3.5607499999999996	4.51854	0.0267851	0.00748824	0.123349	0.0772645
chr17	29146213	29146313	6747066	0	-	0.39	(0.378,0.408]	chr17	663199	59	INTRON	INTRON	MYO18A	ENSG00000196535.19	ENST00000527372.7:ENST00000531253.5:ENST00000533112.5:ENST00000585573.6:ENST00000590565.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	36	2	2.60296	3.5607499999999996	4.51854	0.0267851	0.00748824	0.123349	0.0772645
chr5	77717816	77717916	2646649	0	-	0.54	(0.515,0.57]	chr5	251578	26	INTRON	INTRON	TBCA	ENSG00000171530.15	ENST00000380377.9:ENST00000306388.10:ENST00000520361.5:ENST00000651106.1:ENST00000518338.6:ENST00000522370.1:ENST00000520039.1	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	2.52504	3.56067	4.5963	0.029342	0.00370287	0.128055	0.0561162
chr16	85623058	85623157	6416067	0	+	0.444444	(0.44,0.476]	chr16	615481	93	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1:ENST00000405402.6:ENST00000411612.5:ENST00000253458.12:ENST00000393243.5	protein_coding	protein_coding	protein_coding	protein_coding	2	47	2	1.77101	3.560665	5.35032	0.0693975	3.02713e-4	0.184298	0.0155054
chr21	44095516	44095614	7415892	0	+	0.438776	(0.408,0.44]	chr21	755899	9	INTRON	INTRON	TRAPPC10	ENSG00000160218.13	ENST00000291574.9:ENST00000422875.5:ENST00000459741.5:ENST00000465905.5:ENST00000483973.5:ENST00000486746.5:ENST00000469521.5:ENST00000485621.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	33	2	2.2957	3.5605	4.8253	0.0516458	0.0056738	0.176696	0.0653997
chr2	62301636	62301736	790343	0	+	0.32	(0.28,0.32]	chr2	88708	38	INTRON	INTRON	ENSG00000228541	ENSG00000228541.2	ENST00000688476.1:ENST00000689590.1:ENST00000687402.1:ENST00000687773.1	lncRNA	lncRNA	lncRNA	lncRNA	1	41	2	2.51488	3.5604899999999997	4.6061	0.0380957	0.0102724	0.141678	0.089002
chr19	11946753	11946836	7019970	0	+	0.433735	(0.408,0.44]	chr19	697886	1	UTR5	UTR5:EXON_MRNA:SS3_PROX:INTRON	ZNF700	ENSG00000196757.8	ENST00000622593.4:ENST00000254321.10:ENST00000482090.1	protein_coding	protein_coding	protein_coding	protein_coding	3	59	2	2.1226	3.560485	4.99837	0.012812	0.00131369	0.0926667	0.0333932
chr19	29961651	29961751	7047748	0	+	0.34	(0.32,0.35]	chr19	702663	32	INTRON	INTRON	URI1	ENSG00000105176.18	ENST00000360605.8:ENST00000570564.5:ENST00000574233.5:ENST00000392271.6:ENST00000574110.5:ENST00000574666.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	48	2	2.35591	3.56046	4.76501	0.0128129	0.0114287	0.0990564	0.0886611
chr4	78854527	78854626	1982175	0	+	0.535354	(0.515,0.57]	chr4	198504	31	INTRON	INTRON	BMP2K	ENSG00000138756.19	ENST00000389010.7:ENST00000502613.3:ENST00000502871.5:ENST00000505725.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	179	2	3.53848	3.56037	3.5822600000000002	6.18101e-6	1.14418e-6	0.00186272	6.1522e-4
chr11	34894410	34894509	4942469	0	-	0.414141	(0.408,0.44]	chr11	463106	35	INTRON	INTRON	APIP	ENSG00000149089.13	ENST00000395787.4:ENST00000527830.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	72	2	3.28852	3.560345	3.83217	0.00287185	1.79883e-4	0.0474836	0.0116696
chr15	87336726	87336826	6252914	0	-	0.26	[0,0.28]	chr15	596790	95	INTRON	INTRON	ENSG00000259560	ENSG00000259560.2	ENST00000665121.1:ENST00000656130.1	lncRNA	lncRNA	lncRNA	lncRNA	1	44	2	2.27119	3.56025	4.84931	0.070351	0.00779241	0.184298	0.0787356
chr2	157286434	157286534	896807	0	+	0.27	[0,0.28]	chr2	99287	3	SS5_PROX	SS5_PROX:INTRON	GALNT5	ENSG00000136542.9	ENST00000259056.5	protein_coding	protein_coding	protein_coding	protein_coding	1	44	2	2.27119	3.56025	4.84931	0.070351	0.00779241	0.184298	0.0787356
chr5	54255702	54255802	2620369	0	-	0.23	[0,0.28]	chr5	248860	834	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2:ENST00000505630.5:ENST00000505383.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	44	2	2.27119	3.56025	4.84931	0.070351	0.00779241	0.184298	0.0787356
chr2	240014106	240014204	1345617	0	-	0.540816	(0.515,0.57]	chr2	141095	17	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	NDUFA10	ENSG00000130414.13	ENST00000679183.1:ENST00000677057.1:ENST00000676782.1:ENST00000677407.1:ENST00000676929.1:ENST00000678455.1:ENST00000252711.7:ENST00000677692.1:ENST00000476216.6:ENST00000677395.1:ENST00000678188.1:ENST00000677979.1:ENST00000678914.1:ENST00000678562.1:ENST00000678832.1:ENST00000677155.1:ENST00000677764.1:ENST00000677294.1:ENST00000678468.1:ENST00000678158.1:ENST00000676491.1:ENST00000677114.1:ENST00000404554.5:ENST00000620965.5:ENST00000485344.6:ENST00000679308.1:ENST00000677567.1:ENST00000679158.1:ENST00000443626.5:ENST00000444548.6:ENST00000448880.6:ENST00000677490.1:ENST00000307300.8:ENST00000678898.1:ENST00000677368.1:ENST00000677263.1:ENST00000678289.1:ENST00000676784.1:ENST00000414580.2:ENST00000679332.1:ENST00000678737.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	86	2	3.44592	3.560225	3.67453	3.27949e-4	8.97344e-5	0.0160995	0.00844245
chr1	12349303	12349374	29470	0	+	0.408451	(0.408,0.44]	chr1	3628	3	CDS	CDS:EXON_MRNA	VPS13D	ENSG00000048707.15	ENST00000620676.6:ENST00000613099.4:ENST00000011700.10:ENST00000646917.1:ENST00000460333.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	52	2	1.9831	3.56006	5.13702	0.018491	0.00202889	0.116694	0.04086
chr3	41203676	41203776	1403066	0	+	0.42	(0.408,0.44]	chr3	147417	29	INTRON	INTRON	CTNNB1	ENSG00000168036.18	ENST00000643541.1:ENST00000426215.5:ENST00000645210.1:ENST00000646381.1:ENST00000405570.6:ENST00000642248.1:ENST00000433400.6:ENST00000642992.1:ENST00000431914.6:ENST00000642836.1:ENST00000396185.8:ENST00000642986.1:ENST00000644678.1:ENST00000643031.1:ENST00000396183.7:ENST00000645982.1:ENST00000453024.6:ENST00000645900.1:ENST00000647264.1:ENST00000646174.1:ENST00000643992.1:ENST00000642886.1:ENST00000647390.1:ENST00000643052.1:ENST00000488914.2:ENST00000349496.11:ENST00000642426.1:ENST00000646074.1:ENST00000645276.1:ENST00000644138.1:ENST00000646116.1:ENST00000644873.1:ENST00000643865.1:ENST00000644867.1:ENST00000646725.1:ENST00000645493.1:ENST00000646369.1:ENST00000643977.1:ENST00000647413.1:ENST00000644524.1:ENST00000645305.1:ENST00000643297.1:ENST00000450969.6:ENST00000642315.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	52	2	1.9831	3.56006	5.13702	0.018491	0.00202889	0.116694	0.04086
chr3	170145721	170145821	1861466	0	-	0.31	(0.28,0.32]	chr3	186645	2	SS3_PROX	SS3_PROX:INTRON	PHC3	ENSG00000173889.16	ENST00000495893.7:ENST00000494943.5:ENST00000467570.5:ENST00000484931.5:ENST00000479467.5:ENST00000466189.5:ENST00000475729.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	120	2	3.43467	3.560055	3.68544	9.30275e-4	1.38843e-4	0.0279637	0.0101519
chr1	829083	829164	392	0	+	0.45679	(0.44,0.476]	chr1	71	2	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	LINC01128	ENSG00000228794.11	ENST00000624927.3:ENST00000623808.4:ENST00000685334.1:ENST00000445118.7:ENST00000669922.1:ENST00000670780.1:ENST00000659124.2:ENST00000688309.1:ENST00000610067.7:ENST00000667414.1:ENST00000666741.1:ENST00000685764.1:ENST00000623070.5:ENST00000688008.1:ENST00000608189.6:ENST00000658846.1:ENST00000448975.6:ENST00000686238.1:ENST00000661237.2:ENST00000685879.1:ENST00000685566.1:ENST00000449005.6:ENST00000609009.6:ENST00000416570.6:ENST00000609139.6:ENST00000441765.6:ENST00000657837.1:ENST00000691316.1:ENST00000692194.1:ENST00000668541.1:ENST00000691234.1:ENST00000657175.1:ENST00000660797.1:ENST00000622921.1	lncRNA	lncRNA	lncRNA	lncRNA	3	53	2	1.62896	3.559965	5.49097	0.0546679	4.8612e-4	0.182674	0.0203841
chr3	197955549	197955649	1598790	0	+	0.43	(0.408,0.44]	chr3	165722	4	SS3_PROX	SS3_PROX:INTRON	RPL35A	ENSG00000182899.17	ENST00000647248.2:ENST00000448864.6:ENST00000642387.1:ENST00000429437.5:ENST00000439255.1:ENST00000474640.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	52	2	1.8749	3.559955	5.24501	0.0264246	0.00137378	0.133676	0.0336718
chr21	29343808	29343905	7392806	0	+	0.329897	(0.32,0.35]	chr21	753210	11	UTR3	UTR3:EXON_MRNA:INTRON	BACH1	ENSG00000156273.16	ENST00000286800.8:ENST00000399921.5:ENST00000422809.5:ENST00000468059.1	protein_coding	protein_coding	protein_coding	protein_coding	2	48	2	1.88468	3.55994	5.2352	0.0515071	0.0028268	0.176696	0.0472361
chr16	23949522	23949622	6324896	0	+	0.28	[0,0.28]	chr16	605701	558	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000498739.1	protein_coding	protein_coding	protein_coding	protein_coding	2	101	2	3.33621	3.55984	3.78347	0.00427056	4.61323e-4	0.0573912	0.0194611
chr10	74085009	74085108	4455383	0	+	0.40404	(0.378,0.408]	chr10	411437	11	INTRON	INTRON	VCL	ENSG00000035403.18	ENST00000623461.3:ENST00000372755.7:ENST00000624354.3:ENST00000211998.10:ENST00000478896.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	48	2	1.94681	3.55981	5.17281	0.0457723	7.27294e-4	0.149888	0.0245647
chr6	31672379	31672476	2843454	0	+	0.381443	(0.378,0.408]	chr6	267749	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	LY6G5B	ENSG00000240053.8	ENST00000375864.4:ENST00000409525.1:ENST00000471088.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	48	2	1.94681	3.55981	5.17281	0.0457723	7.27294e-4	0.149888	0.0245647
chr22	19396486	19396586	7554067	0	-	0.38	(0.378,0.408]	chr22	772281	3	SS5_PROX	SS5_PROX:INTRON	HIRA:C22orf39	ENSG00000100084.14:ENSG00000242259.9	ENST00000263208.5:ENST00000340170.8:ENST00000509549.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	220	2	3.35485	3.559745	3.76464	1.64295e-5	1.67704e-6	0.00324999	7.82975e-4
chr6	163445592	163445692	3032014	0	+	0.47	(0.44,0.476]	chr6	282563	162	INTRON	INTRON	QKI	ENSG00000112531.17	ENST00000361758.8:ENST00000453779.6:ENST00000275262.11:ENST00000392127.6:ENST00000361752.8:ENST00000361195.6:ENST00000424802.7:ENST00000545607.5:ENST00000544436.5:ENST00000537041.5:ENST00000537124.5:ENST00000545346.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	52	2	2.03266	3.559625	5.08659	0.0155853	0.00226401	0.109411	0.0425438
chr1	230096132	230096232	334368	0	+	0.53	(0.515,0.57]	chr1	38930	42	INTRON	INTRON	GALNT2	ENSG00000143641.10	ENST00000494106.1:ENST00000366672.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	62	2	3.53844	3.5593950000000003	3.58035	7.92613e-4	5.21239e-4	0.0259663	0.0204523
chr12	116130408	116130508	5424073	0	-	0.29	(0.28,0.32]	chr12	518263	185	INTRON	INTRON	MED13L	ENSG00000123066.9	ENST00000281928.9:ENST00000650226.1:ENST00000548743.2:ENST00000647567.1:ENST00000551197.2	protein_coding	protein_coding	protein_coding	protein_coding	2	50	2	2.1895	3.559395	4.92929	0.0227063	0.0098607	0.124921	0.0838128
chr2	28299890	28299990	724252	0	+	0.32	(0.28,0.32]	chr2	83696	10	INTRON	INTRON	BABAM2	ENSG00000158019.21	ENST00000344773.6:ENST00000379624.6:ENST00000342045.6:ENST00000379632.6:ENST00000361704.6	protein_coding	protein_coding	protein_coding	protein_coding	2	50	2	2.1895	3.559395	4.92929	0.0227063	0.0098607	0.124921	0.0838128
chr17	59678524	59678617	6642178	0	+	0.397849	(0.378,0.408]	chr17	648631	10	INTRON	INTRON	CLTC	ENSG00000141367.12	ENST00000621829.4:ENST00000393043.5:ENST00000269122.8:ENST00000579456.5	protein_coding	protein_coding	protein_coding	protein_coding	2	74	2	3.32016	3.5593649999999997	3.79857	0.00268328	2.23525e-4	0.0464781	0.0131533
chr10	22319750	22319844	4406588	0	+	0.340426	(0.32,0.35]	chr10	406637	6	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	COMMD3:COMMD3-BMI1	ENSG00000148444.16:ENSG00000269897.5	ENST00000602574.5:ENST00000475460.6:ENST00000376836.8:ENST00000602390.5:ENST00000479958.6:ENST00000456711.5:ENST00000444869.5:ENST00000496071.5:ENST00000489125.2:ENST00000463409.6:ENST00000463688.6:ENST00000448361.5:ENST00000417470.1:ENST00000483684.1:ENST00000602395.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	36	2	2.84569	3.5593449999999995	4.273	0.0368357	0.0121137	0.138959	0.0962599
chr2	95102695	95102792	1177420	0	-	0.329897	(0.32,0.35]	chr2	125626	11	EXON_MRNA	EXON_MRNA:INTRON	MRPS5	ENSG00000289685.1	ENST00000272418.7:ENST00000345084.10:ENST00000695437.1:ENST00000695436.1:ENST00000695435.1:ENST00000695434.1:ENST00000695433.1:ENST00000695432.1:ENST00000695439.1:ENST00000461916.6:ENST00000475895.6:ENST00000482568.1:ENST00000695440.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	36	2	2.84569	3.5593449999999995	4.273	0.0368357	0.0121137	0.138959	0.0962599
chr8	94865164	94865244	3800556	0	+	0.3375	(0.32,0.35]	chr8	352421	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	INTS8	ENSG00000164941.14	ENST00000523731.6:ENST00000524333.5:ENST00000343161.8:ENST00000523206.5:ENST00000520526.5:ENST00000520845.5:ENST00000520315.5:ENST00000517918.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	36	2	2.84569	3.5593449999999995	4.273	0.0368357	0.0121137	0.138959	0.0962599
chr9	88434573	88434672	4152513	0	+	0.343434	(0.32,0.35]	chr9	378746	76	INTRON	INTRON	SPIN1	ENSG00000106723.17	ENST00000485804.5:ENST00000469017.6:ENST00000375859.4:ENST00000462844.5:ENST00000485565.6:ENST00000483785.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	36	2	2.84569	3.5593449999999995	4.273	0.0368357	0.0121137	0.138959	0.0962599
chr21	7057250	7057350	7365303	0	+	0.29	(0.28,0.32]	chr21	751699	78	INTRON	INTRON	ENSG00000277067	ENSG00000277067.4	ENST00000623095.3:ENST00000622911.1:ENST00000621909.4:ENST00000623394.3:ENST00000624310.1	lncRNA	lncRNA	lncRNA	lncRNA	1	43	2	2.78004	3.559335	4.33863	0.0207276	0.0193244	0.122348	0.108861
chr7	123737618	123737718	3632547	0	-	0.29	(0.28,0.32]	chr7	337581	280	INTRON	INTRON	WASL	ENSG00000106299.8	ENST00000223023.5	protein_coding	protein_coding	protein_coding	protein_coding	2	51	2	2.38391	3.5593250000000003	4.73474	0.0162835	0.0122525	0.101453	0.0969406
chr1	88964155	88964255	499813	0	-	0.44	(0.408,0.44]	chr1	59303	2	SS5_PROX	SS5_PROX:INTRON	KYAT3	ENSG00000137944.18	ENST00000370491.7:ENST00000446900.6:ENST00000260508.9:ENST00000370486.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	35	2	2.18807	3.5591550000000005	4.93024	0.0708044	0.00170369	0.184528	0.0381936
chr1	203813305	203813405	296857	0	+	0.41	(0.408,0.44]	chr1	34134	99	INTRON	INTRON	ZC3H11A:ZBED6	ENSG00000058673.17:ENSG00000257315.3	ENST00000367210.3:ENST00000453771.5:ENST00000432282.5:ENST00000638800.1:ENST00000367214.5:ENST00000639812.1:ENST00000367212.7:ENST00000332127.8:ENST00000550078.2:ENST00000495527.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	35	2	2.18807	3.5591550000000005	4.93024	0.0708044	0.00170369	0.184528	0.0381936
chr17	66460505	66460605	6663877	0	+	0.42	(0.408,0.44]	chr17	650326	963	INTRON	INTRON	PRKCA	ENSG00000154229.12	ENST00000413366.8:ENST00000578063.5:ENST00000284384.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	35	2	2.18807	3.5591550000000005	4.93024	0.0708044	0.00170369	0.184528	0.0381936
chr9	69716160	69716259	4263517	0	-	0.434343	(0.408,0.44]	chr9	392370	68	UTR3	UTR3:EXON_MRNA	PTAR1	ENSG00000188647.13	ENST00000377200.9:ENST00000340434.5	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	2.18807	3.5591550000000005	4.93024	0.0708044	0.00170369	0.184528	0.0381936
chr1	71040380	71040480	482765	0	-	0.44	(0.408,0.44]	chr1	57831	275	INTRON	INTRON	PTGER3	ENSG00000050628.21	ENST00000628037.2:ENST00000370931.7:ENST00000361210.6:ENST00000479353.5:ENST00000497146.5:ENST00000460330.5:ENST00000356595.8:ENST00000306666.10:ENST00000370924.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	115	2	3.18515	3.55912	3.93309	1.78185e-4	6.73915e-5	0.0121697	0.00679256
chr10	42811005	42811105	4428317	0	+	0.36	(0.35,0.378]	chr10	408133	84	INTRON	INTRON	BMS1	ENSG00000165733.8	ENST00000374518.6	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	2.72498	3.559005	4.39303	0.0237246	0.0168499	0.118716	0.11068
chr2	213925296	213925395	1009047	0	+	0.353535	(0.35,0.378]	chr2	107775	9	INTRON	INTRON	SPAG16	ENSG00000144451.20	ENST00000406979.6:ENST00000452556.5:ENST00000331683.10:ENST00000451561.1:ENST00000480494.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	34	2	2.72498	3.559005	4.39303	0.0237246	0.0168499	0.118716	0.11068
chr4	139033706	139033806	2049563	0	+	0.37	(0.35,0.378]	chr4	203265	172	INTRON	INTRON	NOCT	ENSG00000151014.6	ENST00000280614.4:ENST00000630479.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	34	2	2.72498	3.559005	4.39303	0.0237246	0.0168499	0.118716	0.11068
chr7	64557958	64558058	3537270	0	-	0.36	(0.35,0.378]	chr7	329913	132	INTRON	INTRON	ZNF680	ENSG00000173041.12	ENST00000309683.11:ENST00000476563.1:ENST00000447137.2:ENST00000473601.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	34	2	2.72498	3.559005	4.39303	0.0237246	0.0168499	0.118716	0.11068
chr9	87660814	87660913	4151460	0	+	0.363636	(0.35,0.378]	chr9	378631	23	INTRON	INTRON	DAPK1	ENSG00000196730.13	ENST00000358077.9:ENST00000469640.6:ENST00000472284.5:ENST00000408954.8:ENST00000622514.4:ENST00000491893.5:ENST00000489291.5:ENST00000494010.1:ENST00000466188.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	34	2	2.72498	3.559005	4.39303	0.0237246	0.0168499	0.118716	0.11068
chr5	135359319	135359419	2728511	0	-	0.36	(0.35,0.378]	chr5	256807	64	EXON_LNCRNA	EXON_LNCRNA:INTRON	MACROH2A1	ENSG00000113648.17	ENST00000511689.6:ENST00000512507.5:ENST00000304332.8:ENST00000687629.1:ENST00000688649.1:ENST00000312469.8:ENST00000360597.8:ENST00000506671.5:ENST00000423969.6:ENST00000510038.1:ENST00000507868.5:ENST00000508785.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	60	2	1.56287	3.558935	5.555	0.0697648	1.71389e-4	0.184298	0.0113605
chr5	71508280	71508377	2384114	0	+	0.381443	(0.378,0.408]	chr5	229940	32	INTRON	INTRON	BDP1	ENSG00000145734.20	ENST00000358731.9:ENST00000508917.6:ENST00000508157.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	53	2	1.8374	3.558865	5.28033	0.0299228	0.00143651	0.142135	0.0340925
chr1	180501744	180501844	595826	0	-	0.34	(0.32,0.35]	chr1	71211	3	SS5_PROX	SS5_PROX:INTRON	ACBD6	ENSG00000230124.8	ENST00000645415.1:ENST00000642319.1:ENST00000367595.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	57	2	1.83315	3.558825	5.2845	0.0313348	0.00240071	0.144381	0.0440612
chr6	109369713	109369811	3185783	0	-	0.377551	(0.35,0.378]	chr6	296659	3	INTRON	INTRON	CD164	ENSG00000135535.17	ENST00000310786.10:ENST00000413644.6:ENST00000504373.2:ENST00000415861.2:ENST00000324953.9:ENST00000275080.11:ENST00000499860.6:ENST00000512821.5:ENST00000506649.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	76	2	1.38867	3.55866	5.72865	0.0441117	3.18898e-4	0.162255	0.016499
chr16	85609809	85609909	6415930	0	+	0.42	(0.408,0.44]	chr16	615470	531	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	6	149	2	2.5802	3.55865	4.5371	5.11085e-4	2.94395e-6	0.020816	0.0011002
chr14	103429473	103429573	5826071	0	+	0.43	(0.408,0.44]	chr14	552822	1	SS5_PROX	SS5_PROX:INTRON	MARK3	ENSG00000075413.19	ENST00000678179.1:ENST00000676838.1:ENST00000677348.1:ENST00000677404.1:ENST00000676694.1:ENST00000676938.1:ENST00000678619.1:ENST00000676897.1:ENST00000677214.1:ENST00000677942.1:ENST00000676830.1:ENST00000678999.1:ENST00000677228.1:ENST00000556744.2:ENST00000677104.1:ENST00000679330.1:ENST00000560417.6:ENST00000440884.7:ENST00000676475.1:ENST00000677035.1:ENST00000678022.1:ENST00000677560.1:ENST00000561314.6:ENST00000429436.7:ENST00000677118.1:ENST00000676564.1:ENST00000678169.1:ENST00000678175.1:ENST00000678897.1:ENST00000678278.1:ENST00000676645.1:ENST00000677829.1:ENST00000678302.1:ENST00000677133.1:ENST00000561164.2:ENST00000558223.6:ENST00000559328.6:ENST00000678207.1:ENST00000677360.1:ENST00000676905.1:ENST00000678343.1:ENST00000677347.1:ENST00000678071.1:ENST00000677432.1:ENST00000678237.1:ENST00000677604.1:ENST00000676518.1:ENST00000677051.1:ENST00000677857.1:ENST00000677869.1:ENST00000678423.1:ENST00000560603.6:ENST00000416682.6:ENST00000303622.13:ENST00000216288.11:ENST00000679105.1:ENST00000553942.5:ENST00000335102.9:ENST00000561225.1:ENST00000678091.1:ENST00000561071.5:ENST00000558698.5:ENST00000559268.5:ENST00000560731.5:ENST00000676745.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	35	2	2.58624	3.55856	4.53088	0.0273686	0.00669275	0.123904	0.0738715
chr5	65525177	65525276	2633903	0	-	0.434343	(0.408,0.44]	chr5	250149	1	INTRON	INTRON	CENPK	ENSG00000123219.13	ENST00000514814.5:ENST00000396679.6:ENST00000242872.7:ENST00000508421.5:ENST00000510693.5:ENST00000506282.6:ENST00000511841.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	35	2	2.58624	3.55856	4.53088	0.0273686	0.00669275	0.123904	0.0738715
chr6	15259257	15259357	2823078	0	+	0.41	(0.408,0.44]	chr6	265190	99	INTRON	INTRON	JARID2	ENSG00000008083.14	ENST00000341776.7:ENST00000397311.4	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	2.58624	3.55856	4.53088	0.0273686	0.00669275	0.123904	0.0738715
chr7	156868475	156868575	3687771	0	-	0.44	(0.408,0.44]	chr7	342096	312	INTRON	INTRON	LMBR1	ENSG00000105983.23	ENST00000353442.10:ENST00000415428.5:ENST00000454132.5:ENST00000434503.5:ENST00000430278.5:ENST00000434278.5:ENST00000444719.5:ENST00000461469.5:ENST00000414218.1:ENST00000434453.1:ENST00000498034.5:ENST00000433968.5:ENST00000485985.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	35	2	2.58624	3.55856	4.53088	0.0273686	0.00669275	0.123904	0.0738715
chr8	67166052	67166148	3777697	0	+	0.4375	(0.408,0.44]	chr8	350438	17	EXON_MRNA	EXON_MRNA:INTRON	CSPP1	ENSG00000104218.16	ENST00000676113.1:ENST00000675306.2:ENST00000678156.1:ENST00000262210.11:ENST00000678017.1:ENST00000675869.1:ENST00000678542.1:ENST00000677619.1:ENST00000676605.1:ENST00000676471.1:ENST00000677256.1:ENST00000676847.1:ENST00000677009.1:ENST00000676317.1:ENST00000677592.1:ENST00000676573.1:ENST00000678318.1:ENST00000677473.1:ENST00000674993.1:ENST00000679226.1:ENST00000676882.1:ENST00000675955.1:ENST00000677430.1:ENST00000678616.1:ENST00000679112.1:ENST00000678645.1:ENST00000677845.1:ENST00000676858.1:ENST00000678747.1:ENST00000519668.1:ENST00000677855.1:ENST00000677052.1:ENST00000679274.1:ENST00000678635.1:ENST00000676804.1:ENST00000679295.1:ENST00000677964.1:ENST00000676968.1:ENST00000678895.1:ENST00000678723.1:ENST00000677131.1:ENST00000521324.3:ENST00000675990.1:ENST00000521168.5:ENST00000677697.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	35	2	2.58624	3.55856	4.53088	0.0273686	0.00669275	0.123904	0.0738715
chr1	185314383	185314481	603689	0	-	0.367347	(0.35,0.378]	chr1	71930	27	INTRON	INTRON	IVNS1ABP	ENSG00000116679.16	ENST00000367498.8:ENST00000459929.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	34	2	2.39746	3.5584949999999997	4.71953	0.041314	0.0103314	0.161534	0.0850389
chr12	49692014	49692113	5321921	0	-	0.373737	(0.35,0.378]	chr12	507278	30	INTRON	INTRON	FMNL3	ENSG00000161791.14	ENST00000335154.10:ENST00000550488.5:ENST00000352151.9:ENST00000550424.1	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	2.39746	3.5584949999999997	4.71953	0.041314	0.0103314	0.161534	0.0850389
chr17	67238633	67238732	6825764	0	-	0.373737	(0.35,0.378]	chr17	674543	195	INTRON	INTRON	HELZ	ENSG00000198265.12	ENST00000358691.10:ENST00000579953.5:ENST00000580168.5:ENST00000417253.7:ENST00000580662.5:ENST00000584641.5:ENST00000581159.5:ENST00000580963.1:ENST00000579861.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:non_stop_decay:nonsense_mediated_decay:processed_transcript	1	34	2	2.39746	3.5584949999999997	4.71953	0.041314	0.0103314	0.161534	0.0850389
chr6	24705350	24705448	3070583	0	-	0.377551	(0.35,0.378]	chr6	285341	6	UTR3	UTR3:EXON_MRNA	C6orf62	ENSG00000112308.13	ENST00000378119.9	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	2.39746	3.5584949999999997	4.71953	0.041314	0.0103314	0.161534	0.0850389
chr10	32943012	32943111	4592555	0	-	0.252525	[0,0.28]	chr10	423511	39	INTRON	INTRON	ITGB1	ENSG00000150093.20	ENST00000609742.3:ENST00000678989.1:ENST00000677363.1:ENST00000302278.8:ENST00000396033.6:ENST00000417122.7:ENST00000676895.1:ENST00000678120.1:ENST00000676623.1:ENST00000678952.1:ENST00000677999.1:ENST00000679187.1:ENST00000678479.1:ENST00000676964.1:ENST00000488494.6:ENST00000488427.2:ENST00000678591.1:ENST00000678943.1:ENST00000437302.6:ENST00000678701.1:ENST00000678766.1:ENST00000676659.1:ENST00000677310.1:ENST00000474568.6:ENST00000676460.1:ENST00000475184.6:ENST00000484088.5:ENST00000480226.5:ENST00000534049.5:ENST00000528877.5:ENST00000414670.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	75	2	1.64178	3.5584599999999997	5.47514	0.0390996	0.00354561	0.161325	0.0529186
chr5	113015265	113015364	2453782	0	+	0.272727	[0,0.28]	chr5	235130	19	UTR3	UTR3:EXON_MRNA	DCP2	ENSG00000172795.17	ENST00000515408.5:ENST00000389063.3:ENST00000674880.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	269	2	3.29944	3.5584350000000002	3.81743	2.06804e-4	4.62069e-6	0.0131276	0.00144728
chr10	117309378	117309478	4702042	0	-	0.33	(0.32,0.35]	chr10	433735	187	INTRON	INTRON	PDZD8	ENSG00000165650.12	ENST00000334464.7:ENST00000482496.5:ENST00000489302.5:ENST00000489491.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	36	2	2.21917	3.558425	4.89768	0.0641245	0.00793135	0.199279	0.076155
chr11	66660261	66660361	4811253	0	+	0.35	(0.32,0.35]	chr11	447918	80	INTRON	INTRON	RBM4	ENSG00000173933.21	ENST00000396053.9	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	2.21917	3.558425	4.89768	0.0641245	0.00793135	0.199279	0.076155
chr2	26111003	26111103	713871	0	+	0.33	(0.32,0.35]	chr2	82453	7	INTRON	INTRON	RAB10	ENSG00000084733.11	ENST00000264710.5:ENST00000495146.5:ENST00000473035.1:ENST00000462003.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	36	2	2.21917	3.558425	4.89768	0.0641245	0.00793135	0.199279	0.076155
chr11	116777642	116777741	5044880	0	-	0.323232	(0.32,0.35]	chr11	475461	40	UTR3	UTR3:EXON_MRNA	ZPR1	ENSG00000109917.11	ENST00000227322.8:ENST00000444935.5:ENST00000429220.5	protein_coding	protein_coding	protein_coding	protein_coding	1	40	2	2.74415	3.55842	4.37269	0.0198267	0.0154102	0.109608	0.108569
chr13	19700861	19700957	5552115	0	-	0.291667	(0.28,0.32]	chr13	530678	11	INTRON	INTRON	PSPC1	ENSG00000121390.19	ENST00000471658.5:ENST00000492741.5:ENST00000635562.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	2	56	2	2.77917	3.5584100000000003	4.33765	0.039714	0.00285651	0.143072	0.0494641
chr17	4326083	4326183	6711956	0	-	0.27	[0,0.28]	chr17	657718	186	INTRON	INTRON	UBE2G1	ENSG00000132388.13	ENST00000396981.7:ENST00000572484.5:ENST00000574633.5:ENST00000571980.1:ENST00000571953.5:ENST00000574059.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	54	2	2.00649	3.5584100000000003	5.11033	0.040391	0.00991388	0.161534	0.0838372
chr17	42269816	42269916	6772159	0	-	0.29	(0.28,0.32]	chr17	666964	373	INTRON	INTRON	STAT5B	ENSG00000173757.10	ENST00000293328.8:ENST00000468312.1:ENST00000415845.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	244	2	2.15823	3.558225	4.95822	0.00100143	2.09021e-6	0.029157	0.00100071
chr2	61284034	61284119	1128644	0	-	0.223529	[0,0.28]	chr2	121312	2	INTRON	INTRON	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000472706.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	40	2	2.57033	3.5582149999999997	4.5461	0.0365918	0.0305273	0.143385	0.138959
chr3	47065321	47065417	1680593	0	-	0.260417	[0,0.28]	chr3	171527	3	INTRON	INTRON	SETD2	ENSG00000181555.22	ENST00000691544.1:ENST00000638947.2:ENST00000686876.1:ENST00000687657.1:ENST00000431180.5:ENST00000409792.4:ENST00000330022.11:ENST00000686773.1:ENST00000685005.1:ENST00000690461.1:ENST00000685505.1:ENST00000692883.1:ENST00000693321.1:ENST00000688290.1:ENST00000691902.1:ENST00000690157.1:ENST00000692362.1:ENST00000685237.1:ENST00000693738.1:ENST00000686792.1:ENST00000445387.5:ENST00000492397.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	40	2	2.57033	3.5582149999999997	4.5461	0.0365918	0.0305273	0.143385	0.138959
chr4	25260791	25260891	1933172	0	+	0.22	[0,0.28]	chr4	194079	2	SS5_PROX	SS5_PROX:INTRON	PI4K2B	ENSG00000038210.14	ENST00000512921.4:ENST00000264864.8	protein_coding	protein_coding	protein_coding	protein_coding	1	40	2	2.57033	3.5582149999999997	4.5461	0.0365918	0.0305273	0.143385	0.138959
chr5	98912176	98912276	2683906	0	-	0.25	[0,0.28]	chr5	253957	67	INTRON	INTRON	CHD1	ENSG00000153922.11	ENST00000614616.5:ENST00000284049.7	protein_coding	protein_coding	protein_coding	protein_coding	1	40	2	2.57033	3.5582149999999997	4.5461	0.0365918	0.0305273	0.143385	0.138959
chr6	106239163	106239263	3177293	0	-	0.22	[0,0.28]	chr6	296169	212	INTRON	INTRON	ATG5	ENSG00000057663.16	ENST00000636437.1:ENST00000636335.1:ENST00000369070.5:ENST00000369076.8:ENST00000635758.2:ENST00000360666.6:ENST00000343245.7:ENST00000646025.1:ENST00000613993.1:ENST00000476518.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	40	2	2.57033	3.5582149999999997	4.5461	0.0365918	0.0305273	0.143385	0.138959
chr1	70148086	70148186	479308	0	-	0.29	(0.28,0.32]	chr1	57614	2	SS5_PROX	SS5_PROX:INTRON	LRRC40	ENSG00000066557.6	ENST00000370952.4	protein_coding	protein_coding	protein_coding	protein_coding	1	37	2	2.60656	3.558185	4.50981	0.0275554	0.0256827	0.133676	0.123904
chr15	68125558	68125658	6056669	0	+	0.29	(0.28,0.32]	chr15	576567	373	INTRON	INTRON	PIAS1	ENSG00000033800.14	ENST00000564915.5:ENST00000249636.11:ENST00000562190.1:ENST00000545237.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	37	2	2.60656	3.558185	4.50981	0.0275554	0.0256827	0.133676	0.123904
chr17	28905995	28906088	6745754	0	-	0.311828	(0.28,0.32]	chr17	662853	9	UTR3	UTR3:EXON_MRNA	PHF12	ENSG00000109118.14	ENST00000332830.9:ENST00000577226.5	protein_coding	protein_coding	protein_coding	protein_coding	1	37	2	2.60656	3.558185	4.50981	0.0275554	0.0256827	0.133676	0.123904
chr18	9231952	9232052	6869893	0	+	0.29	(0.28,0.32]	chr18	680611	96	INTRON	INTRON	ANKRD12	ENSG00000101745.17	ENST00000262126.9:ENST00000540578.6:ENST00000400020.7:ENST00000546007.6:ENST00000359158.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	37	2	2.60656	3.558185	4.50981	0.0275554	0.0256827	0.133676	0.123904
chr3	47139750	47139850	1681362	0	-	0.3	(0.28,0.32]	chr3	171624	127	INTRON	INTRON	SETD2	ENSG00000181555.22	ENST00000691544.1:ENST00000638947.2:ENST00000409792.4:ENST00000412450.1	protein_coding	protein_coding	protein_coding	protein_coding	1	37	2	2.60656	3.558185	4.50981	0.0275554	0.0256827	0.133676	0.123904
chr4	2952074	2952174	2100107	0	-	0.29	(0.28,0.32]	chr4	207881	4	SS5_PROX	SS5_PROX:INTRON	NOP14	ENSG00000087269.16	ENST00000416614.7:ENST00000314262.10:ENST00000502735.5:ENST00000398071.4	protein_coding	protein_coding	protein_coding	protein_coding	1	37	2	2.60656	3.558185	4.50981	0.0275554	0.0256827	0.133676	0.123904
chr7	105232419	105232519	3602334	0	-	0.3	(0.28,0.32]	chr7	336137	255	INTRON	INTRON	SRPK2	ENSG00000135250.17	ENST00000393651.8:ENST00000357311.7:ENST00000489828.5:ENST00000482897.5:ENST00000460391.5:ENST00000462282.5:ENST00000465112.5:ENST00000482862.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	37	2	2.60656	3.558185	4.50981	0.0275554	0.0256827	0.133676	0.123904
chrX	111702439	111702539	7702231	0	+	0.31	(0.28,0.32]	chrX	788221	124	INTRON	INTRON	ALG13	ENSG00000101901.12	ENST00000487141.5:ENST00000394780.8:ENST00000251943.8:ENST00000610588.4:ENST00000621367.4:ENST00000622997.3:ENST00000624161.3:ENST00000636363.1:ENST00000624881.3:ENST00000495283.5:ENST00000486353.5:ENST00000623144.3:ENST00000470971.5:ENST00000623148.3:ENST00000471924.5:ENST00000436609.5:ENST00000470704.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	37	2	2.60656	3.558185	4.50981	0.0275554	0.0256827	0.133676	0.123904
chr1	53824212	53824311	460468	0	-	0.343434	(0.32,0.35]	chr1	55427	48	INTRON	INTRON	NDC1	ENSG00000058804.12	ENST00000371429.4:ENST00000480952.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	72	2	1.46414	3.55818	5.65222	0.065059	1.55757e-4	0.179599	0.0106835
chr11	46568438	46568538	4947004	0	-	0.4	(0.378,0.408]	chr11	463525	190	INTRON	INTRON	AMBRA1	ENSG00000110497.15	ENST00000683756.1:ENST00000534300.5:ENST00000533727.5:ENST00000314845.7:ENST00000458649.6:ENST00000528950.1:ENST00000531542.1:ENST00000526606.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	44	2	2.23831	3.5579650000000003	4.87762	0.0179575	0.00553849	0.114265	0.0648867
chr13	51964471	51964571	5596435	0	-	0.38	(0.378,0.408]	chr13	534947	2	SS5_PROX	SS5_PROX:INTRON	ATP7B	ENSG00000123191.16	ENST00000242839.10:ENST00000344297.9:ENST00000674147.1:ENST00000448424.7:ENST00000634620.1:ENST00000634296.1:ENST00000400370.8:ENST00000634844.1:ENST00000673772.1:ENST00000634308.1:ENST00000418097.7:ENST00000400366.6:ENST00000635406.1:ENST00000482841.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	44	2	2.23831	3.5579650000000003	4.87762	0.0179575	0.00553849	0.114265	0.0648867
chr7	138530919	138531018	3435354	0	+	0.383838	(0.378,0.408]	chr7	319991	13	INTRON	INTRON	TRIM24	ENSG00000122779.18	ENST00000343526.9:ENST00000415680.6:ENST00000497516.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	44	2	2.23831	3.5579650000000003	4.87762	0.0179575	0.00553849	0.114265	0.0648867
chr7	152417136	152417236	3681105	0	-	0.4	(0.378,0.408]	chr7	341660	581	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000682301.1:ENST00000452749.2:ENST00000680867.1:ENST00000683800.1:ENST00000684278.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	44	2	2.23831	3.5579650000000003	4.87762	0.0179575	0.00553849	0.114265	0.0648867
chr1	236825137	236825237	342804	0	+	0.28	[0,0.28]	chr1	39867	4	SS3_PROX	SS3_PROX:INTRON	MTR	ENSG00000116984.15	ENST00000680454.1:ENST00000366577.10:ENST00000674797.2:ENST00000679569.1:ENST00000650888.1:ENST00000463959.1:ENST00000535889.6:ENST00000651455.1:ENST00000681102.1:ENST00000679842.1:ENST00000681177.1:ENST00000681937.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	40	2	2.29142	3.557875	4.82433	0.0592143	0.0200334	0.189982	0.109608
chr13	33837899	33837999	5467556	0	+	0.31	(0.28,0.32]	chr13	523970	5	INTRON	INTRON	RFC3	ENSG00000133119.13	ENST00000434425.5:ENST00000616236.1	protein_coding	protein_coding	protein_coding	protein_coding	1	37	2	2.38101	3.557875	4.73474	0.0456017	0.0162835	0.164236	0.101453
chr16	4871501	4871601	6283550	0	+	0.31	(0.28,0.32]	chr16	601594	2	SS5_PROX	SS5_PROX:INTRON	UBN1	ENSG00000118900.15	ENST00000262376.11:ENST00000590769.5:ENST00000396658.8:ENST00000586716.1	protein_coding	protein_coding	protein_coding	protein_coding	1	37	2	2.38101	3.557875	4.73474	0.0456017	0.0162835	0.164236	0.101453
chr18	10535094	10535192	6873915	0	+	0.204082	[0,0.28]	chr18	680940	2	INTRON	INTRON	NAPG	ENSG00000134265.13	ENST00000580483.5:ENST00000322897.11:ENST00000580224.5:ENST00000582978.5:ENST00000582472.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	40	2	2.29142	3.557875	4.82433	0.0592143	0.0200334	0.189982	0.109608
chr2	38854470	38854568	1100477	0	-	0.265306	[0,0.28]	chr2	118111	4	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DHX57	ENSG00000163214.21	ENST00000457308.6:ENST00000622155.4:ENST00000620517.4:ENST00000474104.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	40	2	2.29142	3.557875	4.82433	0.0592143	0.0200334	0.189982	0.109608
chr2	148056836	148056935	887110	0	+	0.272727	[0,0.28]	chr2	98627	8	INTRON	INTRON	MBD5	ENSG00000204406.14	ENST00000407073.5:ENST00000488372.5:ENST00000496158.5:ENST00000642680.2:ENST00000473478.5:ENST00000635796.1:ENST00000637997.1:ENST00000470063.5:ENST00000638043.2:ENST00000638090.1:ENST00000637445.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	40	2	2.29142	3.557875	4.82433	0.0592143	0.0200334	0.189982	0.109608
chr20	3154288	3154386	7306488	0	-	0.306122	(0.28,0.32]	chr20	743949	27	INTRON	INTRON	FASTKD5	ENSG00000215251.5	ENST00000380266.4:ENST00000692371.1:ENST00000687419.1:ENST00000688674.1	protein_coding	protein_coding	protein_coding	protein_coding	1	37	2	2.38101	3.557875	4.73474	0.0456017	0.0162835	0.164236	0.101453
chr5	140418639	140418738	2502994	0	+	0.262626	[0,0.28]	chr5	239166	160	INTRON	INTRON	ANKHD1	ENSG00000131503.21	ENST00000297183.10:ENST00000616482.4:ENST00000360839.7:ENST00000421134.5:ENST00000394723.7:ENST00000511151.5:ENST00000394722.7	protein_coding	protein_coding	protein_coding	protein_coding	1	40	2	2.29142	3.557875	4.82433	0.0592143	0.0200334	0.189982	0.109608
chr6	147781038	147781138	2991809	0	+	0.25	[0,0.28]	chr6	280177	436	INTRON	INTRON	ENSG00000227681	ENSG00000227681.5	ENST00000427015.1	lncRNA	lncRNA	lncRNA	lncRNA	1	40	2	2.29142	3.557875	4.82433	0.0592143	0.0200334	0.189982	0.109608
chr10	118750297	118750397	4704374	0	-	0.4	(0.378,0.408]	chr10	433898	195	INTRON	INTRON	CACUL1	ENSG00000151893.15	ENST00000369151.8:ENST00000493518.5:ENST00000477583.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	44	2	2.11103	3.55781	5.00459	0.0266911	0.00371142	0.134419	0.0535094
chr2	99352453	99352552	834962	0	+	0.40404	(0.378,0.408]	chr2	93660	145	INTRON	INTRON	EIF5B	ENSG00000158417.11	ENST00000617677.1:ENST00000289371.11	protein_coding	protein_coding	protein_coding	protein_coding	2	44	2	2.11103	3.55781	5.00459	0.0266911	0.00371142	0.134419	0.0535094
chr21	9339929	9340029	7367531	0	+	0.39	(0.378,0.408]	chr21	751926	83	INTRON	INTRON	ENSG00000278932	ENSG00000278932.5	ENST00000622961.3:ENST00000686553.1:ENST00000691955.1:ENST00000625153.3:ENST00000692626.1:ENST00000685951.1:ENST00000686510.1:ENST00000692884.1	lncRNA	lncRNA	lncRNA	lncRNA	2	44	2	2.11103	3.55781	5.00459	0.0266911	0.00371142	0.134419	0.0535094
chr6	87208119	87208219	2913784	0	+	0.39	(0.378,0.408]	chr6	275281	379	INTRON	INTRON	ZNF292	ENSG00000188994.13	ENST00000369577.8:ENST00000369578.6:ENST00000518845.1:ENST00000339907.8:ENST00000496806.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	44	2	2.11103	3.55781	5.00459	0.0266911	0.00371142	0.134419	0.0535094
chr15	60360336	60360435	6194942	0	-	0.30303	(0.28,0.32]	chr15	590294	20	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	ANXA2	ENSG00000182718.18	ENST00000396024.7:ENST00000559818.6:ENST00000679109.1:ENST00000676687.1:ENST00000558169.6:ENST00000557906.6:ENST00000558558.6:ENST00000559113.6:ENST00000559780.6:ENST00000559956.6:ENST00000560468.6:ENST00000678870.1:ENST00000678061.1:ENST00000678450.1:ENST00000677968.1:ENST00000451270.7:ENST00000558985.6:ENST00000678796.1:ENST00000559647.2:ENST00000332680.8:ENST00000560014.5:ENST00000504475.6:ENST00000421017.6:ENST00000559176.5:ENST00000560466.5:ENST00000558132.5:ENST00000561022.5:ENST00000560367.6:ENST00000558503.6:ENST00000558998.5:ENST00000559559.5:ENST00000560165.5:ENST00000560389.5:ENST00000559725.5:ENST00000559350.5:ENST00000558986.5:ENST00000677258.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	39	2	2.97333	3.557735	4.14214	0.0579756	0.00857834	0.167723	0.083729
chr17	67122669	67122769	6824570	0	-	0.31	(0.28,0.32]	chr17	674397	3	SS5_PROX	SS5_PROX:INTRON	HELZ	ENSG00000198265.12	ENST00000358691.10:ENST00000579953.5:ENST00000580168.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	39	2	2.97333	3.557735	4.14214	0.0579756	0.00857834	0.167723	0.083729
chr6	107383415	107383515	3181152	0	-	0.31	(0.28,0.32]	chr6	296346	487	INTRON	INTRON	PDSS2	ENSG00000164494.12	ENST00000369037.9:ENST00000369031.4	protein_coding	protein_coding	protein_coding	protein_coding	1	39	2	2.97333	3.557735	4.14214	0.0579756	0.00857834	0.167723	0.083729
chr10	70166426	70166526	4640853	0	-	0.36	(0.35,0.378]	chr10	426909	3	SS5_PROX	SS5_PROX:INTRON	SAR1A	ENSG00000079332.15	ENST00000373242.6:ENST00000373241.9:ENST00000373239.2	protein_coding	protein_coding	protein_coding	protein_coding	2	46	2	2.39583	3.55768	4.71953	0.0107976	0.0103314	0.0920575	0.0850389
chr19	32359398	32359496	7048465	0	+	0.438776	(0.408,0.44]	chr19	702771	28	EXON_MRNA	EXON_MRNA:INTRON	ZNF507	ENSG00000168813.17	ENST00000311921.8:ENST00000355898.6:ENST00000587084.5:ENST00000544431.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	36	2	2.78122	3.5576099999999995	4.334	0.015812	0.011982	0.101453	0.0962115
chr18	23584696	23584795	6958946	0	-	0.525253	(0.515,0.57]	chr18	688395	27	INTRON	INTRON	NPC1	ENSG00000141458.13	ENST00000269228.10:ENST00000540608.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	30	2	2.9114	3.5576049999999997	4.20381	0.0189208	0.00826019	0.108861	0.0813266
chr4	6788136	6788236	1921642	0	+	0.52	(0.515,0.57]	chr4	192985	49	INTRON	INTRON	KIAA0232	ENSG00000170871.12	ENST00000503278.1:ENST00000508423.1:ENST00000307659.6:ENST00000425103.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	30	2	2.9114	3.5576049999999997	4.20381	0.0189208	0.00826019	0.108861	0.0813266
chr5	176160989	176161089	2774733	0	-	0.56	(0.515,0.57]	chr5	261215	14	INTRON	INTRON	ENSG00000248596:ENSG00000287579	ENSG00000248596.8:ENSG00000287579.1	ENST00000515403.5:ENST00000663646.1:ENST00000503307.2	lncRNA	lncRNA	lncRNA	lncRNA	1	30	2	2.9114	3.5576049999999997	4.20381	0.0189208	0.00826019	0.108861	0.0813266
chr7	151089615	151089711	3448381	0	+	0.541667	(0.515,0.57]	chr7	322157	21	INTRON	INTRON	AGAP3	ENSG00000133612.19	ENST00000490097.5:ENST00000463381.5:ENST00000397238.7:ENST00000622464.4:ENST00000479901.5:ENST00000473312.5:ENST00000469901.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	30	2	2.9114	3.5576049999999997	4.20381	0.0189208	0.00826019	0.108861	0.0813266
chrX	136030360	136030460	7727119	0	+	0.52	(0.515,0.57]	chrX	790678	3	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	SLC9A6	ENSG00000198689.13	ENST00000636347.1:ENST00000636092.1:ENST00000637195.1:ENST00000637234.1:ENST00000637581.1:ENST00000370701.6:ENST00000370698.7:ENST00000630721.3:ENST00000678163.1:ENST00000370695.8:ENST00000675856.1:ENST00000643775.1:ENST00000636798.1:ENST00000638078.1:ENST00000636206.2:ENST00000636625.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	30	2	2.9114	3.5576049999999997	4.20381	0.0189208	0.00826019	0.108861	0.0813266
chr5	176966854	176966954	2776529	0	-	0.3	(0.28,0.32]	chr5	261550	83	INTRON	INTRON	UIMC1	ENSG00000087206.17	ENST00000377227.8:ENST00000511320.6:ENST00000506128.5:ENST00000512031.5:ENST00000510698.2:ENST00000503273.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	89	2	3.43158	3.5575599999999996	3.68354	0.00244075	5.5135e-4	0.0445752	0.0213455
chr3	47163227	47163327	1681597	0	-	0.61	(0.57,1]	chr3	171625	4	SS5_PROX	SS5_PROX:INTRON	SETD2	ENSG00000181555.22	ENST00000691544.1:ENST00000638947.2:ENST00000409792.4:ENST00000412450.1	protein_coding	protein_coding	protein_coding	protein_coding	11	161	2	3.2031	3.5575200000000002	3.91194	3.2322e-7	1.77746e-8	2.85941e-4	4.22833e-5
chr6	78998491	78998591	3141265	0	-	0.28	[0,0.28]	chr6	292819	1	SS3_PROX	SS3_PROX:INTRON	PHIP	ENSG00000146247.14	ENST00000275034.5	protein_coding	protein_coding	protein_coding	protein_coding	2	54	2	2.05756	3.5575200000000002	5.05748	0.0352544	0.0113653	0.150301	0.0886611
chr6	160062982	160063050	3023942	0	+	0.25	[0,0.28]	chr6	282157	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	IGF2R	ENSG00000197081.16	ENST00000676781.1:ENST00000677704.1:ENST00000356956.6:ENST00000650503.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	54	2	2.05756	3.5575200000000002	5.05748	0.0352544	0.0113653	0.150301	0.0886611
chr6	170583954	170584054	3267781	0	-	0.34	(0.32,0.35]	chr6	303423	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PDCD2	ENSG00000071994.11	ENST00000541970.6:ENST00000167218.9:ENST00000392090.6:ENST00000545869.5:ENST00000542896.5:ENST00000544866.5:ENST00000539212.5:ENST00000538195.1:ENST00000453163.6:ENST00000537445.5:ENST00000544336.5:ENST00000614056.4:ENST00000443345.2:ENST00000544755.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	110	2	3.28616	3.5575	3.82884	4.19685e-4	2.51931e-4	0.018968	0.0141209
chr3	15772184	15772283	1623562	0	-	0.272727	[0,0.28]	chr3	168009	55	INTRON	INTRON	ANKRD28	ENSG00000206560.12	ENST00000399451.6:ENST00000624145.3:ENST00000683139.1:ENST00000412318.5:ENST00000497037.5:ENST00000451422.1:ENST00000498524.5:ENST00000439830.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	54	2	1.95356	3.55743	5.1613	0.0463152	0.00866441	0.166231	0.0787025
chr5	104153095	104153195	2441946	0	+	0.2	[0,0.28]	chr5	234410	478	INTRON	INTRON	LINC02163	ENSG00000251026.2	ENST00000662211.1:ENST00000666145.1	lncRNA	lncRNA	lncRNA	lncRNA	2	54	2	1.95356	3.55743	5.1613	0.0463152	0.00866441	0.166231	0.0787025
chr6	35350946	35351046	2852062	0	+	0.28	[0,0.28]	chr6	269491	34	INTRON	INTRON	PPARD	ENSG00000112033.14	ENST00000418635.6:ENST00000448077.6:ENST00000360694.8:ENST00000311565.4:ENST00000337400.6	protein_coding	protein_coding	protein_coding	protein_coding	2	54	2	1.95356	3.55743	5.1613	0.0463152	0.00866441	0.166231	0.0787025
chr7	116875086	116875185	3385488	0	+	0.353535	(0.35,0.378]	chr7	317035	9	INTRON	INTRON	CAPZA2	ENSG00000198898.15	ENST00000464223.5:ENST00000484325.1:ENST00000414148.6:ENST00000361183.8:ENST00000449080.5:ENST00000639546.1:ENST00000426421.5:ENST00000490693.5:ENST00000417431.5:ENST00000461878.5:ENST00000464669.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	58	2	2.39519	3.55736	4.71953	0.0103314	0.00401951	0.0850389	0.0578189
chr1	247319912	247320011	684339	0	-	0.292929	(0.28,0.32]	chr1	80224	62	INTRON	INTRON	ZNF496	ENSG00000162714.13	ENST00000294753.8:ENST00000682384.1:ENST00000461277.2	protein_coding	protein_coding	protein_coding	protein_coding	2	55	2	1.91611	3.5572649999999997	5.19842	0.0539102	0.00152333	0.164153	0.0360297
chr6	35678833	35678933	3087419	0	-	0.45	(0.44,0.476]	chr6	288789	356	INTRON	INTRON	FKBP5	ENSG00000096060.15	ENST00000536438.5:ENST00000539068.5:ENST00000357266.9:ENST00000542713.1	protein_coding	protein_coding	protein_coding	protein_coding	3	57	2	1.98938	3.557255	5.12513	0.0198602	7.96486e-4	0.109608	0.0258804
chr3	185792171	185792271	1886020	0	-	0.35	(0.32,0.35]	chr3	188573	935	INTRON	INTRON	IGF2BP2	ENSG00000073792.16	ENST00000382199.7:ENST00000346192.7:ENST00000457616.6:ENST00000421047.3:ENST00000461957.5:ENST00000493302.5:ENST00000466476.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	57	2	1.93031	3.5572299999999997	5.18415	0.0231421	0.00333629	0.126939	0.0512081
chr1	246593734	246593833	350257	0	+	0.444444	(0.44,0.476]	chr1	40496	14	INTRON	INTRON	CNST	ENSG00000162852.14	ENST00000483271.1:ENST00000366513.9:ENST00000366512.7:ENST00000366511.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	96	2	3.14512	3.55719	3.96926	5.78837e-4	8.75142e-5	0.0223209	0.00785215
chr1	100292574	100292671	172541	0	+	0.371134	(0.35,0.378]	chr1	18779	12	UTR3	UTR3:EXON_MRNA	RTCA	ENSG00000137996.13	ENST00000370128.9	protein_coding	protein_coding	protein_coding	protein_coding	2	46	2	1.90405	3.557115	5.21018	0.0482651	0.00228003	0.171852	0.0426265
chr10	11948908	11949008	4556827	0	-	0.36	(0.35,0.378]	chr10	420545	4	SS3_PROX	SS3_PROX:INTRON	UPF2	ENSG00000151461.20	ENST00000357604.10:ENST00000356352.6:ENST00000397053.6	protein_coding	protein_coding	protein_coding	protein_coding	2	46	2	1.90405	3.557115	5.21018	0.0482651	0.00228003	0.171852	0.0426265
chr12	116200570	116200670	5424777	0	-	0.42	(0.408,0.44]	chr12	518271	194	INTRON	INTRON	MED13L	ENSG00000123066.9	ENST00000281928.9:ENST00000650226.1:ENST00000548743.2:ENST00000647567.1:ENST00000551197.2	protein_coding	protein_coding	protein_coding	protein_coding	3	52	2	2.03431	3.5570700000000004	5.07983	0.0154896	0.00247652	0.108998	0.0446195
chr15	42853220	42853319	6158326	0	-	0.333333	(0.32,0.35]	chr15	586277	124	INTRON	INTRON	TTBK2	ENSG00000128881.18	ENST00000267890.11:ENST00000567840.5:ENST00000567274.5:ENST00000564431.5:ENST00000562880.5:ENST00000566931.1	protein_coding	protein_coding	protein_coding	protein_coding	2	52	2	1.99307	3.55703	5.12099	0.04271	0.00143632	0.148082	0.0347139
chr6	80032253	80032350	2907866	0	+	0.360825	(0.35,0.378]	chr6	274758	3	INTRON	INTRON	TTK	ENSG00000112742.10	ENST00000509894.5:ENST00000230510.7:ENST00000369798.7	protein_coding	protein_coding	protein_coding	protein_coding	2	49	2	2.72093	3.5569800000000003	4.39303	0.0237246	0.00314173	0.118716	0.0514466
chrX	107165758	107165858	7860086	0	-	0.36	(0.35,0.378]	chrX	801294	112	INTRON	INTRON	NUP62CL	ENSG00000198088.10	ENST00000372466.8:ENST00000484614.5:ENST00000421752.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	49	2	2.72093	3.5569800000000003	4.39303	0.0237246	0.00314173	0.118716	0.0514466
chr9	137784393	137784492	4225165	0	+	0.393939	(0.378,0.408]	chr9	388320	1	INTRON	INTRON	EHMT1	ENSG00000181090.21	ENST00000371394.6:ENST00000460843.6:ENST00000636027.1:ENST00000637161.1:ENST00000637261.1:ENST00000462942.3:ENST00000637891.1:ENST00000637949.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	38	2	2.90162	3.55694	4.21226	0.0177403	0.0113157	0.11319	0.0886121
chr12	108651953	108652044	5405967	0	-	0.516484	(0.515,0.57]	chr12	515968	3	SS5_PROX	SS5_PROX:INTRON	CORO1C	ENSG00000110880.11	ENST00000261401.8:ENST00000420959.6:ENST00000541050.5:ENST00000546705.5:ENST00000549384.5:ENST00000421578.6:ENST00000550542.5:ENST00000549772.5:ENST00000552030.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	30	2	2.35125	3.556845	4.76244	0.0436431	0.00362147	0.162255	0.0533855
chr16	89349295	89349395	6542170	0	-	0.56	(0.515,0.57]	chr16	634215	56	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000647238.1:ENST00000644045.1:ENST00000643147.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	30	2	2.35125	3.556845	4.76244	0.0436431	0.00362147	0.162255	0.0533855
chr8	41714814	41714875	3938221	0	-	0.52459	(0.515,0.57]	chr8	361050	2	SS5_PROX	SS5_PROX:INTRON	ANK1	ENSG00000029534.21	ENST00000347528.8:ENST00000265709.13:ENST00000289734.13	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	2.35125	3.556845	4.76244	0.0436431	0.00362147	0.162255	0.0533855
chr12	124792627	124792727	5445860	0	-	0.56	(0.515,0.57]	chr12	521236	2	SS3_PROX	SS3_PROX:INTRON	SCARB1	ENSG00000073060.17	ENST00000339570.9:ENST00000261693.11:ENST00000679605.1:ENST00000681686.1:ENST00000680926.1:ENST00000680556.1:ENST00000680982.1:ENST00000680596.1:ENST00000681555.1:ENST00000415380.6:ENST00000681117.1:ENST00000681499.1:ENST00000538291.5:ENST00000546215.5:ENST00000535005.5:ENST00000679955.1:ENST00000544327.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	40	2	1.94945	3.55679	5.16413	0.0414068	8.14815e-4	0.161557	0.0263656
chr12	112038728	112038828	5414696	0	-	0.51	(0.476,0.515]	chr12	517126	1	SS5_PROX	SS5_PROX:INTRON	NAA25	ENSG00000111300.10	ENST00000261745.9:ENST00000552527.5:ENST00000549711.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	52	2	1.80284	3.55671	5.31058	0.033161	9.15544e-4	0.145899	0.0278396
chr7	106257383	106257483	3608308	0	-	0.4	(0.378,0.408]	chr7	336478	30	EXON_MRNA	EXON_MRNA:INTRON	NAMPT	ENSG00000105835.13	ENST00000681491.1:ENST00000222553.8:ENST00000681494.1:ENST00000680708.1:ENST00000681653.1:ENST00000681391.1:ENST00000680991.1:ENST00000680077.1:ENST00000681456.1:ENST00000680675.1:ENST00000681550.1:ENST00000680864.1:ENST00000680584.1:ENST00000680669.1:ENST00000424768.2:ENST00000681255.1:ENST00000679873.1:ENST00000679643.1:ENST00000681878.1:ENST00000489732.2:ENST00000679951.1:ENST00000680823.1:ENST00000680468.1:ENST00000679894.1:ENST00000680482.1:ENST00000463871.2:ENST00000679461.1:ENST00000681372.1:ENST00000681936.1:ENST00000680152.1:ENST00000680616.1:ENST00000681887.1:ENST00000680129.1:ENST00000680786.1:ENST00000681223.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	161	2	3.37854	3.55667	3.7348	2.09342e-4	2.06575e-6	0.0131276	8.86423e-4
chr11	68924902	68925001	4819237	0	+	0.292929	(0.28,0.32]	chr11	449187	67	INTRON	INTRON	IGHMBP2	ENSG00000132740.10	ENST00000675615.1:ENST00000676228.1:ENST00000255078.8:ENST00000676173.1:ENST00000674955.1:ENST00000675118.1:ENST00000675305.1:ENST00000675648.1:ENST00000674775.1:ENST00000675684.1:ENST00000675493.1:ENST00000674745.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	42	2	2.67975	3.5565749999999996	4.4334	0.0252505	0.0163355	0.12011	0.109464
chr19	1358093	1358193	6994730	0	+	0.31	(0.28,0.32]	chr19	693047	11	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	PWWP3A	ENSG00000160953.17	ENST00000590695.2:ENST00000591337.7:ENST00000590866.2:ENST00000591433.6:ENST00000591806.6:ENST00000588810.6:ENST00000652273.1:ENST00000415183.7:ENST00000587460.6:ENST00000627377.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	42	2	2.67975	3.5565749999999996	4.4334	0.0252505	0.0163355	0.12011	0.109464
chr1	23771008	23771104	401224	0	-	0.604167	(0.57,1]	chr1	48109	15	INTRON	INTRON	ELOA-AS1	ENSG00000236810.7	ENST00000655402.1:ENST00000427796.6:ENST00000686609.1:ENST00000664563.2:ENST00000652963.1:ENST00000692026.1	lncRNA	lncRNA	lncRNA	lncRNA	3	35	2	2.23972	3.556525	4.87333	0.00670296	3.21412e-4	0.0707084	0.0159645
chr7	140875296	140875396	3663239	0	-	0.3	(0.28,0.32]	chr7	340105	247	INTRON	INTRON	BRAF	ENSG00000157764.14	ENST00000496384.7:ENST00000644969.2:ENST00000646891.1:ENST00000644905.1:ENST00000642228.1:ENST00000288602.11:ENST00000646730.1:ENST00000497784.2:ENST00000642272.1:ENST00000642808.1:ENST00000643790.1:ENST00000469930.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	60	2	1.81152	3.5565249999999997	5.30153	0.034446	0.00332518	0.147767	0.0512081
chr7	101861245	101861345	3366801	0	+	0.43	(0.408,0.44]	chr7	315215	419	INTRON	INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000497815.5:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000607092.1:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000558469.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	47	2	2.11447	3.55642	4.99837	0.0285207	0.00131369	0.12666	0.0333932
chr13	41313866	41313965	5474241	0	+	0.484848	(0.476,0.515]	chr13	524429	19	INTRON	INTRON	NAA16	ENSG00000172766.19	ENST00000379406.8:ENST00000403412.7:ENST00000476980.5:ENST00000464857.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	46	2	1.99197	3.5563450000000003	5.12072	0.039572	8.42139e-4	0.143072	0.0263691
chr2	20327778	20327878	1076554	0	-	0.49	(0.476,0.515]	chr2	115034	4	SS3_PROX	SS3_PROX:INTRON	PUM2	ENSG00000055917.16	ENST00000361078.7:ENST00000442400.5:ENST00000420234.5:ENST00000429419.6:ENST00000432105.5:ENST00000446940.5:ENST00000424110.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	46	2	1.99197	3.5563450000000003	5.12072	0.039572	8.42139e-4	0.143072	0.0263691
chr9	125284464	125284564	4198482	0	+	0.5	(0.476,0.515]	chr9	383148	151	INTRON	INTRON	GAPVD1	ENSG00000165219.23	ENST00000497580.5:ENST00000461379.5:ENST00000297933.11:ENST00000394084.5:ENST00000469528.5:ENST00000470056.5:ENST00000394105.6:ENST00000394083.6:ENST00000495955.5:ENST00000467750.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	46	2	1.99197	3.5563450000000003	5.12072	0.039572	8.42139e-4	0.143072	0.0263691
chr7	140377820	140377919	3661072	0	-	0.333333	(0.32,0.35]	chr7	339845	78	INTRON	INTRON	SLC37A3	ENSG00000157800.18	ENST00000477571.5:ENST00000326232.14:ENST00000447932.6:ENST00000340308.7:ENST00000460560.5:ENST00000490760.5:ENST00000464865.5:ENST00000469193.5:ENST00000461089.5:ENST00000462881.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	84	2	3.07935	3.5560799999999997	4.03281	0.00724137	8.51676e-5	0.0729826	0.00780562
chr5	43041071	43041164	2613894	0	-	0.268817	[0,0.28]	chr5	248464	12	UTR5	UTR5:EXON_MRNA:INTRON	ENSG00000177738:ANXA2R	ENSG00000177738.5:ENSG00000177721.5	ENST00000503152.2:ENST00000665537.1:ENST00000314890.3	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	1	44	2	2.33055	3.5559849999999997	4.78142	0.062338	0.00943974	0.175343	0.0861183
chr16	8961475	8961575	6442734	0	-	0.43	(0.408,0.44]	chr16	620597	52	INTRON	INTRON	USP7	ENSG00000187555.16	ENST00000673704.1:ENST00000344836.9:ENST00000563961.5:ENST00000569230.5:ENST00000566273.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	38	2	3.00595	3.5559450000000004	4.10594	0.0219367	0.00781452	0.123836	0.0759016
chr7	11074945	11075045	3283622	0	+	0.44	(0.408,0.44]	chr7	304989	120	INTRON	INTRON	PHF14	ENSG00000106443.17	ENST00000642461.1:ENST00000634607.2:ENST00000403050.7:ENST00000521747.5:ENST00000423760.6:ENST00000481418.5:ENST00000470665.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	38	2	3.00595	3.5559450000000004	4.10594	0.0219367	0.00781452	0.123836	0.0759016
chr4	1724565	1724663	1910163	0	+	0.55102	(0.515,0.57]	chr4	191575	3	INTRON	INTRON	TACC3	ENSG00000013810.21	ENST00000458173.4:ENST00000651472.1:ENST00000612220.5:ENST00000484651.5:ENST00000313288.9:ENST00000467746.6:ENST00000493975.5:ENST00000652770.1:ENST00000651251.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	62	2	3.30665	3.5559250000000002	3.8052	0.00213226	1.67082e-4	0.041756	0.0111796
chr10	92509549	92509649	4664754	0	-	0.47	(0.44,0.476]	chr10	429845	1	SS5_PROX	SS5_PROX:INTRON	IDE	ENSG00000119912.18	ENST00000265986.11:ENST00000679312.1:ENST00000650060.1:ENST00000679089.1:ENST00000677569.1:ENST00000677096.1:ENST00000679222.1:ENST00000676540.1:ENST00000678026.1:ENST00000676626.1:ENST00000679069.1:ENST00000678977.1:ENST00000679232.1:ENST00000678844.1:ENST00000679174.1:ENST00000678673.1:ENST00000676816.1:ENST00000678715.1:ENST00000678458.1:ENST00000677079.1:ENST00000677434.1:ENST00000678248.1:ENST00000478361.6:ENST00000677978.1:ENST00000677196.1:ENST00000677953.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	60	2	1.96805	3.5559149999999997	5.14378	0.0109533	0.00184943	0.0925675	0.0388609
chr20	5119173	5119269	7311576	0	-	0.583333	(0.57,1]	chr20	744491	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PCNA	ENSG00000132646.11	ENST00000379160.3:ENST00000379143.10	protein_coding	protein_coding	protein_coding	protein_coding	4	62	2	2.86696	3.555715	4.24447	2.88184e-4	7.02904e-6	0.0150627	0.00198457
chr12	123402873	123402972	5242769	0	+	0.494949	(0.476,0.515]	chr12	498205	61	INTRON	INTRON	KMT5A	ENSG00000183955.14	ENST00000402868.8:ENST00000437519.5:ENST00000461103.5:ENST00000437502.1:ENST00000485469.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	12	213	2	2.38134	3.55553	4.72972	1.05877e-4	1.91313e-6	0.00871033	9.42656e-4
chr21	45522124	45522224	7469682	0	-	0.3	(0.28,0.32]	chr21	761352	56	INTRON	INTRON	SLC19A1	ENSG00000173638.19	ENST00000417954.5:ENST00000567670.5:ENST00000311124.9:ENST00000650808.1:ENST00000380010.8:ENST00000485649.3	protein_coding	protein_coding	protein_coding	protein_coding	1	44	2	2.87382	3.555505	4.23719	0.0264147	0.014868	0.133676	0.0989021
chr15	60472687	60472786	6195948	0	-	0.474747	(0.44,0.476]	chr15	590459	40	INTRON	INTRON	ICE2	ENSG00000128915.12	ENST00000261520.9:ENST00000558181.5:ENST00000561114.5:ENST00000558512.5:ENST00000560895.5:ENST00000561446.5:ENST00000560668.5:ENST00000561087.5:ENST00000558654.1:ENST00000560072.5:ENST00000560406.5:ENST00000560520.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	35	2	2.67572	3.555485	4.43525	0.0212064	0.00897296	0.113017	0.0849778
chr16	16125513	16125611	6309548	0	+	0.459184	(0.44,0.476]	chr16	603676	2	SS3_PROX	SS3_PROX:INTRON	ABCC1	ENSG00000103222.20	ENST00000678422.1:ENST00000677164.1:ENST00000399408.7:ENST00000572882.3:ENST00000399410.8:ENST00000676806.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	35	2	2.67572	3.555485	4.43525	0.0212064	0.00897296	0.113017	0.0849778
chr20	3216578	3216674	7224357	0	+	0.447917	(0.44,0.476]	chr20	734119	9	INTRON	INTRON	ITPA	ENSG00000125877.13	ENST00000483354.5:ENST00000460676.5:ENST00000490838.6:ENST00000380113.8:ENST00000609835.5:ENST00000460550.5:ENST00000455664.6:ENST00000399838.3:ENST00000461029.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	35	2	2.67572	3.555485	4.43525	0.0212064	0.00897296	0.113017	0.0849778
chr15	92883543	92883584	6103510	0	+	0.292683	(0.28,0.32]	chr15	581353	1	SS3_ADJ	SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CHASERR:ENSG00000279765	ENSG00000272888.8:ENSG00000279765.3	ENST00000653163.1:ENST00000557682.6:ENST00000553829.1:ENST00000556895.5:ENST00000554669.6:ENST00000554894.5:ENST00000557147.1:ENST00000629685.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	1	40	2	3.07744	3.555445	4.03345	0.0704058	0.00604536	0.184298	0.0700813
chr2	9495267	9495363	1063859	0	-	0.458333	(0.44,0.476]	chr2	113465	1	INTRON	INTRON	ADAM17	ENSG00000151694.14	ENST00000310823.8:ENST00000648548.1:ENST00000649227.1:ENST00000648857.1:ENST00000647979.1:ENST00000647610.1:ENST00000650116.1:ENST00000649686.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	43	2	2.21079	3.555395	4.9	0.0194581	0.00423315	0.119831	0.0572185
chr22	18080314	18080414	7475982	0	+	0.47	(0.44,0.476]	chr22	762213	3	SS5_PROX	SS5_PROX:INTRON	PEX26	ENSG00000215193.14	ENST00000329627.11:ENST00000399744.8:ENST00000428061.2	protein_coding	protein_coding	protein_coding	protein_coding	2	43	2	2.21079	3.555395	4.9	0.0194581	0.00423315	0.119831	0.0572185
chr7	127902851	127902951	3404922	0	+	0.45	(0.44,0.476]	chr7	318152	145	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000465900.5:ENST00000486037.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	43	2	2.21079	3.555395	4.9	0.0194581	0.00423315	0.119831	0.0572185
chr9	112304102	112304202	4317665	0	-	0.45	(0.44,0.476]	chr9	397079	58	INTRON	INTRON	PTBP3	ENSG00000119314.16	ENST00000334318.10:ENST00000458258.5:ENST00000374257.6:ENST00000374255.6:ENST00000343327.6:ENST00000487997.1:ENST00000210227.4:ENST00000450374.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	43	2	2.21079	3.555395	4.9	0.0194581	0.00423315	0.119831	0.0572185
chr14	45241270	45241368	5885180	0	-	0.530612	(0.515,0.57]	chr14	558418	32	INTRON	INTRON	MIS18BP1	ENSG00000129534.14	ENST00000310806.9:ENST00000454990.5:ENST00000453142.3:ENST00000627697.1:ENST00000494512.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	31	2	2.34087	3.555355	4.76984	0.0469761	0.00198034	0.151917	0.0411469
chr21	46195575	46195675	7470528	0	-	0.46	(0.44,0.476]	chr21	761456	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	LSS	ENSG00000160285.15	ENST00000356396.8:ENST00000397728.8:ENST00000457828.6:ENST00000522411.5	protein_coding	protein_coding	protein_coding	protein_coding	2	43	2	2.14573	3.55532	4.96491	0.0238593	0.0034249	0.129075	0.0517761
chr9	93596870	93596970	4159411	0	+	0.46	(0.44,0.476]	chr9	379230	196	INTRON	INTRON	PHF2	ENSG00000197724.11	ENST00000359246.9:ENST00000375376.8:ENST00000610682.1	protein_coding	protein_coding	protein_coding	protein_coding	2	43	2	2.14573	3.55532	4.96491	0.0238593	0.0034249	0.129075	0.0517761
chr7	152296771	152296871	3679890	0	-	0.45	(0.44,0.476]	chr7	341623	100	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000684262.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	56	2	1.61163	3.555205	5.49878	0.0598319	1.52058e-4	0.169278	0.0106137
chr1	40993192	40993286	83340	0	+	0.489362	(0.476,0.515]	chr1	10862	10	INTRON	INTRON	CTPS1	ENSG00000171793.17	ENST00000696107.1:ENST00000480420.6:ENST00000650070.2:ENST00000649864.1:ENST00000648914.1:ENST00000648020.2:ENST00000650634.2:ENST00000696108.1:ENST00000463285.7:ENST00000649124.2:ENST00000498694.2:ENST00000696070.1:ENST00000648801.1:ENST00000470271.6:ENST00000696109.1:ENST00000479480.6:ENST00000372616.1:ENST00000649215.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	48	2	2.41121	3.5551950000000003	4.69918	0.0110342	0.00400966	0.0873897	0.057767
chr16	4844673	4844773	6438997	0	-	0.51	(0.476,0.515]	chr16	620210	2	SS5_PROX	SS5_PROX:INTRON	GLYR1	ENSG00000140632.17	ENST00000321919.14:ENST00000436648.9:ENST00000588732.5:ENST00000589389.5:ENST00000591451.5:ENST00000588297.5:ENST00000587875.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	48	2	2.41121	3.5551950000000003	4.69918	0.0110342	0.00400966	0.0873897	0.057767
chr8	129991860	129991960	4063686	0	-	0.51	(0.476,0.515]	chr8	369844	205	INTRON	INTRON	CYRIB	ENSG00000153310.21	ENST00000694912.1:ENST00000523288.5:ENST00000519110.5:ENST00000401979.6:ENST00000523509.5:ENST00000517654.5:ENST00000518879.5:ENST00000522702.5:ENST00000521223.5:ENST00000518283.5:ENST00000523993.5:ENST00000519020.5:ENST00000518167.5:ENST00000522361.1:ENST00000523514.1:ENST00000518285.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	46	2	1.92984	3.555115	5.18039	0.0466474	6.58744e-4	0.151522	0.0232396
chr17	81598972	81599068	6849215	0	-	0.5	(0.476,0.515]	chr17	678181	13	INTRON	INTRON	NPLOC4	ENSG00000182446.14	ENST00000331134.11:ENST00000374747.9:ENST00000574897.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	46	2	2.05154	3.555005	5.05847	0.0336015	0.00108081	0.134145	0.0300133
chr19	34451680	34451780	7053361	0	+	0.51	(0.476,0.515]	chr19	703538	3	SS3_PROX	SS3_PROX:INTRON	UBA2	ENSG00000126261.13	ENST00000586313.1:ENST00000246548.9:ENST00000439527.6:ENST00000591016.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	46	2	2.05154	3.555005	5.05847	0.0336015	0.00108081	0.134145	0.0300133
chr7	158785218	158785317	3689365	0	-	0.484848	(0.476,0.515]	chr7	342393	115	INTRON	INTRON	ESYT2	ENSG00000117868.18	ENST00000251527.10:ENST00000275418.13:ENST00000652148.1:ENST00000483958.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	46	2	2.05154	3.555005	5.05847	0.0336015	0.00108081	0.134145	0.0300133
chr1	156220076	156220176	230965	0	+	0.56	(0.515,0.57]	chr1	27257	65	INTRON	INTRON	PMF1	ENSG00000160783.19	ENST00000368279.7:ENST00000466489.1:ENST00000368273.8:ENST00000368277.3:ENST00000606952.5:ENST00000497069.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	31	2	2.60899	3.5550049999999995	4.50102	0.0232669	0.00510768	0.118148	0.0646039
chr1	185067971	185068071	275783	0	+	0.52	(0.515,0.57]	chr1	32263	213	INTRON	INTRON	RNF2	ENSG00000121481.11	ENST00000367509.8:ENST00000498201.1:ENST00000367510.8:ENST00000453650.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	31	2	2.60899	3.5550049999999995	4.50102	0.0232669	0.00510768	0.118148	0.0646039
chr15	41109896	41109995	6153176	0	-	0.545455	(0.515,0.57]	chr15	585431	132	INTRON	INTRON	INO80	ENSG00000128908.18	ENST00000648947.1:ENST00000401393.7:ENST00000558357.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	31	2	2.60899	3.5550049999999995	4.50102	0.0232669	0.00510768	0.118148	0.0646039
chr18	1577801	1577901	6859643	0	+	0.53	(0.515,0.57]	chr18	679723	109	INTRON	INTRON	ENSG00000266602	ENSG00000266602.2	ENST00000668980.1:ENST00000665846.1:ENST00000661994.1:ENST00000660357.1:ENST00000657750.1:ENST00000662133.1:ENST00000671074.1:ENST00000653330.1:ENST00000655815.1:ENST00000653094.1:ENST00000662293.1:ENST00000669226.1:ENST00000668483.1:ENST00000653006.1:ENST00000663966.1:ENST00000657235.1:ENST00000652957.1:ENST00000665474.1:ENST00000583163.2:ENST00000665135.1:ENST00000660136.1:ENST00000663660.1:ENST00000663472.1	lncRNA	lncRNA	lncRNA	lncRNA	1	31	2	2.60899	3.5550049999999995	4.50102	0.0232669	0.00510768	0.118148	0.0646039
chr3	179601329	179601429	1879040	0	-	0.52	(0.515,0.57]	chr3	187733	2	SS5_PROX	SS5_PROX:INTRON	MRPL47	ENSG00000136522.14	ENST00000476781.6:ENST00000259038.6:ENST00000392659.2	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	2.60899	3.5550049999999995	4.50102	0.0232669	0.00510768	0.118148	0.0646039
chrX	121209231	121209331	7715282	0	+	0.52	(0.515,0.57]	chrX	789390	230	INTRON	INTRON	ENSG00000286163	ENSG00000286163.1	ENST00000651788.1	lncRNA	lncRNA	lncRNA	lncRNA	1	31	2	2.60899	3.5550049999999995	4.50102	0.0232669	0.00510768	0.118148	0.0646039
chr3	38199661	38199761	1398891	0	+	0.4	(0.378,0.408]	chr3	146686	4	INTRON	INTRON	OXSR1	ENSG00000172939.9	ENST00000446845.5:ENST00000311806.8:ENST00000426620.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	48	2	2.05897	3.55494	5.05091	0.0339294	0.00118558	0.134508	0.031662
chr19	35001544	35001644	7054049	0	+	0.41	(0.408,0.44]	chr19	703700	3	SS5_PROX	SS5_PROX:INTRON	GRAMD1A	ENSG00000089351.15	ENST00000599564.5:ENST00000594597.5:ENST00000317991.10:ENST00000600231.5:ENST00000680623.1:ENST00000603669.5:ENST00000411896.6:ENST00000424536.2:ENST00000598073.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	76	2	3.20437	3.55492	3.90547	0.00306596	2.03612e-4	0.0509893	0.0129859
chr1	35176655	35176736	420423	0	-	0.407407	(0.378,0.408]	chr1	50636	2	SS3_PROX	SS3_PROX:INTRON	SFPQ	ENSG00000116560.12	ENST00000470472.5:ENST00000460428.5:ENST00000468598.5:ENST00000471991.5:ENST00000485365.1:ENST00000490668.5:ENST00000466213.5:ENST00000466745.5	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	3	53	2	1.78011	3.554895	5.32968	0.0356367	0.00119786	0.151629	0.0315806
chr4	32019608	32019708	1941644	0	+	0.38	(0.378,0.408]	chr4	194727	214	INTRON	INTRON	LINC02506	ENSG00000251129.3	ENST00000662669.1:ENST00000665582.2:ENST00000667252.2:ENST00000660373.2:ENST00000684849.1:ENST00000513211.2:ENST00000659613.1:ENST00000657576.1:ENST00000686730.1:ENST00000685407.1:ENST00000685455.1:ENST00000655951.1	lncRNA	lncRNA	lncRNA	lncRNA	3	53	2	1.78011	3.554895	5.32968	0.0356367	0.00119786	0.151629	0.0315806
chr5	138303046	138303146	2731912	0	-	0.37	(0.35,0.378]	chr5	257306	1	SS5_PROX	SS5_PROX:INTRON	CDC25C	ENSG00000158402.21	ENST00000323760.11:ENST00000415130.6:ENST00000648466.1:ENST00000513970.5:ENST00000514555.5:ENST00000503022.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	47	2	2.54421	3.554855	4.5655	0.0155464	0.00630238	0.100909	0.0722266
chr12	116258780	116258880	5425362	0	-	0.27	[0,0.28]	chr12	518291	207	INTRON	INTRON	MED13L	ENSG00000123066.9	ENST00000281928.9:ENST00000650226.1:ENST00000548743.2:ENST00000551197.2:ENST00000650375.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	54	2	2.10688	3.554755	5.00263	0.0307985	0.013055	0.143385	0.093385
chr1	201964932	201965032	292437	0	+	0.51	(0.476,0.515]	chr1	33673	1	SS3_PROX	SS3_PROX:INTRON	TIMM17A	ENSG00000134375.11	ENST00000367287.5:ENST00000478378.5:ENST00000482943.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	71	2	3.53895	3.5546749999999996	3.5704	8.75056e-4	0.00075485700000000005	0.0270926	0.0251966
chr2	108576387	108576487	846266	0	+	0.52	(0.515,0.57]	chr2	94665	52	INTRON	INTRON	LIMS1	ENSG00000169756.17	ENST00000695516.1:ENST00000544547.6:ENST00000695517.1:ENST00000695518.1	protein_coding	protein_coding	protein_coding	protein_coding	3	47	2	1.94493	3.55453	5.16413	0.0204583	8.14815e-4	0.122204	0.0263656
chr9	127493387	127493485	4200749	0	+	0.469388	(0.44,0.476]	chr9	383575	6	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	LRSAM1	ENSG00000148356.15	ENST00000675224.1:ENST00000373324.8:ENST00000674771.1:ENST00000675641.1:ENST00000498513.6:ENST00000675572.1:ENST00000300417.11:ENST00000674784.1:ENST00000675789.1:ENST00000676349.1:ENST00000676336.1:ENST00000676170.1:ENST00000675448.1:ENST00000323301.8:ENST00000675141.1:ENST00000472068.2:ENST00000674516.1:ENST00000675883.1:ENST00000676014.1:ENST00000674970.1:ENST00000675253.1:ENST00000675657.1:ENST00000676318.1:ENST00000675945.1:ENST00000675213.1:ENST00000373322.1:ENST00000675445.1:ENST00000674621.1:ENST00000675198.1:ENST00000676399.1:ENST00000675662.1:ENST00000676137.1:ENST00000675012.1:ENST00000674511.1:ENST00000676409.1:ENST00000675521.1:ENST00000676106.1:ENST00000676035.1:ENST00000483302.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	71	2	3.35227	3.554175	3.75608	0.0022005699999999998	2.6487e-4	0.0417893	0.0144071
chr1	235418176	235418273	340186	0	+	0.381443	(0.378,0.408]	chr1	39568	22	INTRON	INTRON	TBCE	ENSG00000285053.1:ENSG00000284770.2	ENST00000644055.1:ENST00000645655.1:ENST00000647428.1:ENST00000643418.1:ENST00000646624.1:ENST00000647186.1:ENST00000646528.1:ENST00000645351.1:ENST00000643410.1:ENST00000645205.1:ENST00000645836.1:ENST00000642503.1:ENST00000646281.1:ENST00000645069.1:ENST00000644680.1:ENST00000645578.1:ENST00000642431.1:ENST00000644604.1:ENST00000651186.1:ENST00000643125.1:ENST00000406207.5:ENST00000642463.1:ENST00000645899.1:ENST00000647233.1:ENST00000644578.1:ENST00000647418.1:ENST00000645372.1:ENST00000645582.1:ENST00000643994.1:ENST00000647407.1:ENST00000642610.2:ENST00000644037.1:ENST00000646463.1:ENST00000366601.8:ENST00000643524.1:ENST00000646536.1:ENST00000643142.1:ENST00000644838.1:ENST00000646286.1:ENST00000646186.1:ENST00000643615.1:ENST00000543662.4:ENST00000646848.1:ENST00000647332.1:ENST00000647489.1:ENST00000645551.1:ENST00000646821.1:ENST00000472011.6:ENST00000643238.1:ENST00000646104.1:ENST00000645662.1:ENST00000643993.1:ENST00000645964.1:ENST00000642339.1:ENST00000644217.1:ENST00000642372.1:ENST00000646929.1:ENST00000644265.1:ENST00000482230.6:ENST00000644910.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	58	2	1.53052	3.55417	5.57782	0.0744544	1.18586e-4	0.192012	0.00930884
chr17	57454431	57454531	6634740	0	+	0.46	(0.44,0.476]	chr17	648057	93	INTRON	INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000674961.1:ENST00000582453.5:ENST00000675656.1:ENST00000322684.7:ENST00000442934.6:ENST00000579180.2:ENST00000579205.5:ENST00000579505.5:ENST00000582772.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	71	2	3.4718	3.55409	3.63638	0.00136358	4.74104e-4	0.0336321	0.0196816
chr12	31979583	31979682	5106806	0	+	0.585859	(0.57,1]	chr12	482333	89	INTRON	INTRON	RESF1	ENSG00000174718.12	ENST00000541981.5:ENST00000540924.5:ENST00000312561.9:ENST00000535596.5:ENST00000397578.7:ENST00000381054.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	22	2	2.66438	3.5540200000000004	4.44366	0.0171563	0.00210922	0.104099	0.0425419
chr14	64791119	64791218	5910449	0	-	0.585859	(0.57,1]	chr14	561435	36	INTRON	INTRON	SPTB	ENSG00000070182.21	ENST00000644917.1:ENST00000389722.7:ENST00000389720.4	protein_coding	protein_coding	protein_coding	protein_coding	1	22	2	2.66438	3.5540200000000004	4.44366	0.0171563	0.00210922	0.104099	0.0425419
chr10	100232947	100233040	4678638	0	-	0.516129	(0.515,0.57]	chr10	431642	8	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CWF19L1	ENSG00000095485.18	ENST00000468709.5:ENST00000354105.10:ENST00000482452.5:ENST00000478047.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	57	2	1.58964	3.553975	5.51831	0.0408	6.99834e-5	0.1451	0.00692586
chr18	13055579	13055679	6877232	0	+	0.29	(0.28,0.32]	chr18	681443	4	SS3_PROX	SS3_PROX:INTRON	CEP192	ENSG00000101639.19	ENST00000325971.12:ENST00000506447.5:ENST00000589596.5:ENST00000513432.5:ENST00000511820.6:ENST00000510237.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	50	2	2.24061	3.55396	4.86731	0.0194267	0.0116253	0.119831	0.0889104
chr3	142565366	142565464	1838856	0	-	0.306122	(0.28,0.32]	chr3	184955	24	EXON_MRNA	EXON_MRNA:INTRON	ATR	ENSG00000175054.16	ENST00000350721.9:ENST00000661310.1:ENST00000653868.1:ENST00000515149.3:ENST00000659195.1:ENST00000657914.1:ENST00000507148.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	50	2	2.24061	3.55396	4.86731	0.0194267	0.0116253	0.119831	0.0889104
chr9	137623755	137623854	4223519	0	+	0.363636	(0.35,0.378]	chr9	388152	33	INTRON	INTRON	EHMT1	ENSG00000181090.21	ENST00000462484.5:ENST00000371394.6:ENST00000630754.2:ENST00000460843.6:ENST00000626216.2:ENST00000637593.1:ENST00000629335.2:ENST00000637335.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	77	2	3.37175	3.5539199999999997	3.73609	0.00236696	3.31057e-4	0.043778	0.0161599
chr7	107077003	107077103	3377490	0	+	0.34	(0.32,0.35]	chr7	316248	63	INTRON	INTRON	PRKAR2B	ENSG00000005249.13	ENST00000265717.5:ENST00000393613.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	57	2	1.97654	3.553885	5.13123	0.0199113	0.00394704	0.120668	0.0548259
chr2	105345961	105346060	843655	0	+	0.30303	(0.28,0.32]	chr2	94490	7	UTR3	UTR3:EXON_MRNA	C2orf49	ENSG00000135974.10	ENST00000258457.7	protein_coding	protein_coding	protein_coding	protein_coding	2	50	2	1.90263	3.553615	5.2046	0.0503272	0.00448664	0.17488	0.0593175
chr2	167853017	167853117	1258330	0	-	0.29	(0.28,0.32]	chr2	133322	374	INTRON	INTRON	B3GALT1-AS1	ENSG00000235335.3	ENST00000430546.2:ENST00000657553.1:ENST00000670221.1:ENST00000436982.2	lncRNA	lncRNA	lncRNA	lncRNA	4	70	2	1.90241	3.553505	5.2046	0.0157236	0.00448664	0.109464	0.0593175
chr1	235200105	235200204	662566	0	-	0.535354	(0.515,0.57]	chr1	78465	36	INTRON	INTRON	ARID4B	ENSG00000054267.22	ENST00000349213.7:ENST00000366603.6:ENST00000264183.9:ENST00000421364.5:ENST00000491632.5:ENST00000444620.2:ENST00000471257.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	125	2	2.86931	3.5533650000000003	4.23742	4.64989e-5	2.14737e-5	0.00555027	0.00377331
chr3	6548800	6548900	1356729	0	+	0.28	[0,0.28]	chr3	142508	357	INTRON	INTRON	ENSG00000189229	ENSG00000189229.12	ENST00000660158.1:ENST00000433639.1:ENST00000655754.1:ENST00000653839.1:ENST00000662846.1:ENST00000659876.1:ENST00000414438.2:ENST00000658468.1:ENST00000414603.1:ENST00000669512.1:ENST00000667028.1:ENST00000655541.1:ENST00000668643.1:ENST00000671568.1:ENST00000671036.1:ENST00000669798.1:ENST00000655753.1:ENST00000655856.1:ENST00000658398.1:ENST00000661518.1:ENST00000661279.1:ENST00000655495.1:ENST00000663041.1:ENST00000659827.1:ENST00000667716.1:ENST00000662508.1:ENST00000668416.1:ENST00000658133.1:ENST00000659651.1:ENST00000342990.4:ENST00000660054.1:ENST00000671370.1	lncRNA	lncRNA	lncRNA	lncRNA	4	85	2	1.58141	3.5533	5.52519	0.0540605	8.21427e-4	0.164565	0.0261674
chr14	96864807	96864907	5811554	0	+	0.28	[0,0.28]	chr14	551088	37	INTRON	INTRON	VRK1	ENSG00000100749.9	ENST00000553683.2:ENST00000680538.1:ENST00000681195.1:ENST00000681524.1:ENST00000680084.1:ENST00000679533.1:ENST00000681598.1:ENST00000679727.1:ENST00000679758.1:ENST00000679977.1:ENST00000680387.1:ENST00000680335.1:ENST00000680683.1:ENST00000681474.1:ENST00000216639.8:ENST00000681363.1:ENST00000681538.1:ENST00000680922.1:ENST00000679903.1:ENST00000681101.1:ENST00000681419.1:ENST00000679941.1:ENST00000680849.1:ENST00000679770.1:ENST00000681493.1:ENST00000681778.1:ENST00000680993.1:ENST00000681355.1:ENST00000681695.1:ENST00000681344.1:ENST00000680007.1:ENST00000679918.1:ENST00000679816.1:ENST00000680756.1:ENST00000681249.1:ENST00000680526.1:ENST00000679365.1:ENST00000680851.1:ENST00000679506.1:ENST00000679650.1:ENST00000679462.1:ENST00000680724.1:ENST00000681061.1:ENST00000681677.1:ENST00000679843.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	65	2	1.75741	3.5531550000000003	5.3489	0.0424454	0.00514751	0.161763	0.062965
chr6	99411980	99412075	3166009	0	-	0.294737	(0.28,0.32]	chr6	295317	3	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	PNISR	ENSG00000132424.17	ENST00000681615.1:ENST00000369239.10:ENST00000647811.1:ENST00000481229.2:ENST00000679525.1:ENST00000681611.1:ENST00000438806.5:ENST00000478777.5:ENST00000492294.5:ENST00000498075.1:ENST00000466057.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	221	2	2.83399	3.55314	4.27229	7.17184e-5	4.33695e-5	0.00761173	0.00532052
chr15	29736070	29736169	6124539	0	-	0.333333	(0.32,0.35]	chr15	583518	13	INTRON	INTRON	TJP1	ENSG00000104067.17	ENST00000346128.10:ENST00000614355.5:ENST00000400011.6:ENST00000356107.11:ENST00000677774.1:ENST00000545208.6	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	2.56618	3.55303	4.53988	0.0274185	0.0202178	0.136498	0.109913
chr16	8019123	8019223	6440700	0	-	0.33	(0.32,0.35]	chr16	620351	115	INTRON	INTRON	ENSG00000260289	ENSG00000260289.2	ENST00000670665.1:ENST00000654046.1:ENST00000567103.2	lncRNA	lncRNA	lncRNA	lncRNA	1	35	2	2.56618	3.55303	4.53988	0.0274185	0.0202178	0.136498	0.109913
chr17	61816651	61816751	6808465	0	-	0.35	(0.32,0.35]	chr17	672605	75	INTRON	INTRON	BRIP1	ENSG00000136492.10	ENST00000259008.7:ENST00000682755.1:ENST00000682453.1:ENST00000683039.1:ENST00000682989.1:ENST00000682589.1:ENST00000683235.1:ENST00000682477.1:ENST00000684584.1:ENST00000577598.5:ENST00000682066.1:ENST00000584322.2:ENST00000683381.1:ENST00000579028.2:ENST00000682611.1:ENST00000683692.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	35	2	2.56618	3.55303	4.53988	0.0274185	0.0202178	0.136498	0.109913
chr18	46237314	46237414	6899719	0	+	0.33	(0.32,0.35]	chr18	683626	45	INTRON	INTRON	C18orf25	ENSG00000152242.11	ENST00000588730.1:ENST00000615052.5:ENST00000619301.4	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	2.56618	3.55303	4.53988	0.0274185	0.0202178	0.136498	0.109913
chr9	131422803	131422903	4217257	0	+	0.35	(0.32,0.35]	chr9	386720	282	INTRON	INTRON	PRRC2B	ENSG00000288701.1	ENST00000682525.1:ENST00000684596.1:ENST00000683519.1:ENST00000682501.1	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	2.56618	3.55303	4.53988	0.0274185	0.0202178	0.136498	0.109913
chr12	131943238	131943338	5250149	0	+	0.5	(0.476,0.515]	chr12	499274	3	SS3_PROX	SS3_PROX:INTRON	PUS1	ENSG00000177192.14	ENST00000443358.6:ENST00000376649.8:ENST00000542167.2:ENST00000535067.5:ENST00000543754.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	36	2	2.8863	3.55297	4.21964	0.0167715	0.0111679	0.110511	0.0877435
chr17	51170249	51170349	6627555	0	+	0.51	(0.476,0.515]	chr17	647325	2	SS5_PROX	SS5_PROX:INTRON	NME1-NME2:NME2	ENSG00000011052.21:ENSG00000243678.12	ENST00000393193.6:ENST00000376392.10:ENST00000555572.1:ENST00000514264.6:ENST00000513177.5:ENST00000512737.6:ENST00000503064.5:ENST00000393183.7:ENST00000393190.4:ENST00000570801.1:ENST00000573262.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	36	2	2.8863	3.55297	4.21964	0.0167715	0.0111679	0.110511	0.0877435
chr20	6023822	6023922	7230728	0	+	0.36	(0.35,0.378]	chr20	734845	4	SS5_PROX	SS5_PROX:INTRON	CRLS1	ENSG00000088766.12	ENST00000452938.5:ENST00000378863.9:ENST00000378868.4:ENST00000489345.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	77	2	3.44435	3.55293	3.66151	0.00179102	4.717e-4	0.0380316	0.0196294
chr11	125649353	125649451	4883231	0	+	0.346939	(0.32,0.35]	chr11	456600	44	INTRON	INTRON	CHEK1	ENSG00000149554.14	ENST00000438015.7:ENST00000427383.6:ENST00000428830.6:ENST00000544373.5:ENST00000278916.8:ENST00000532449.6:ENST00000534070.5:ENST00000524737.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	35	2	2.48693	3.5529100000000002	4.61889	0.0338094	0.0166646	0.146709	0.102621
chr2	20349405	20349504	1076773	0	-	0.333333	(0.32,0.35]	chr2	115047	160	INTRON	INTRON	PUM2	ENSG00000055917.16	ENST00000361078.7:ENST00000442400.5:ENST00000420234.5:ENST00000429419.6:ENST00000432105.5:ENST00000446940.5:ENST00000424110.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	35	2	2.48693	3.5529100000000002	4.61889	0.0338094	0.0166646	0.146709	0.102621
chr22	38497784	38497884	7588004	0	-	0.34	(0.32,0.35]	chr22	776750	3	SS5_PROX	SS5_PROX:INTRON	DDX17	ENSG00000100201.23	ENST00000403230.3:ENST00000396821.8:ENST00000216019.11:ENST00000432525.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	35	2	2.48693	3.5529100000000002	4.61889	0.0338094	0.0166646	0.146709	0.102621
chr1	8443394	8443494	370022	0	-	0.38	(0.378,0.408]	chr1	43461	47	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000377464.5:ENST00000400907.6:ENST00000656437.1:ENST00000464972.5:ENST00000659924.1	protein_coding	protein_coding	protein_coding	protein_coding	4	67	2	1.71619	3.552835	5.38948	0.0300647	2.85992e-4	0.129153	0.0150568
chr7	87859251	87859331	3566207	0	-	0.4125	(0.408,0.44]	chr7	332332	1	INTRON	INTRON	SLC25A40	ENSG00000075303.13	ENST00000341119.10:ENST00000429674.5:ENST00000444363.5:ENST00000491499.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	43	2	2.21238	3.5528250000000003	4.89327	0.0193525	0.00458906	0.119831	0.0595107
chr1	1794098	1794197	361857	0	-	0.50505	(0.476,0.515]	chr1	42262	9	EXON_MRNA	EXON_MRNA:INTRON	GNB1	ENSG00000078369.18	ENST00000610897.4:ENST00000615252.4:ENST00000378609.9:ENST00000461893.5:ENST00000471354.1:ENST00000439272.6:ENST00000434686.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	43	2	2.13304	3.552785	4.97253	0.024866	0.00311573	0.132101	0.0498063
chr1	30945045	30945145	411664	0	-	0.49	(0.476,0.515]	chr1	49628	3	SS5_PROX	SS5_PROX:INTRON	PUM1	ENSG00000134644.16	ENST00000426105.7:ENST00000373747.7:ENST00000257075.9:ENST00000424085.6:ENST00000525843.5:ENST00000440538.6:ENST00000498419.5:ENST00000373741.8:ENST00000373742.6:ENST00000530669.1:ENST00000529846.5:ENST00000525997.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	43	2	2.13304	3.552785	4.97253	0.024866	0.00311573	0.132101	0.0498063
chr17	62428736	62428836	6652413	0	+	0.48	(0.476,0.515]	chr17	649242	5	INTRON	INTRON	METTL2A	ENSG00000087995.16	ENST00000333483.14:ENST00000616852.1:ENST00000311506.10	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	43	2	2.13304	3.552785	4.97253	0.024866	0.00311573	0.132101	0.0498063
chr17	57465407	57465507	6634850	0	+	0.42	(0.408,0.44]	chr17	648057	203	INTRON	INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000674961.1:ENST00000582453.5:ENST00000675656.1:ENST00000322684.7:ENST00000442934.6:ENST00000579180.2:ENST00000579205.5:ENST00000579505.5:ENST00000582772.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	43	2	2.14732	3.552745	4.95817	0.0237354	0.00372419	0.129075	0.0535094
chr3	47425344	47425414	1682337	0	-	0.428571	(0.408,0.44]	chr3	171835	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	SCAP	ENSG00000114650.21	ENST00000265565.10:ENST00000441517.6:ENST00000320017.10:ENST00000648151.1:ENST00000416208.5:ENST00000494938.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	43	2	2.14732	3.552745	4.95817	0.0237354	0.00372419	0.129075	0.0535094
chr3	142575447	142575547	1838959	0	-	0.44	(0.408,0.44]	chr3	184967	69	INTRON	INTRON	ATR	ENSG00000175054.16	ENST00000350721.9:ENST00000661310.1:ENST00000653868.1:ENST00000515149.3:ENST00000507148.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	43	2	2.14732	3.552745	4.95817	0.0237354	0.00372419	0.129075	0.0535094
chr8	81841297	81841397	3980122	0	-	0.42	(0.408,0.44]	chr8	364706	2	SS5_PROX	SS5_PROX:INTRON	SNX16	ENSG00000104497.15	ENST00000353788.8:ENST00000345957.9:ENST00000396330.6:ENST00000520618.5:ENST00000521810.5:ENST00000523757.5:ENST00000519119.5:ENST00000519817.5:ENST00000518183.5:ENST00000521773.5	protein_coding	protein_coding	protein_coding	protein_coding	2	43	2	2.14732	3.552745	4.95817	0.0237354	0.00372419	0.129075	0.0535094
chr10	86515079	86515178	4659298	0	-	0.50505	(0.476,0.515]	chr10	429294	140	INTRON	INTRON	WAPL	ENSG00000062650.20	ENST00000298767.10	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	2.40608	3.55263	4.69918	0.0425709	0.00400966	0.148082	0.057767
chr12	91499014	91499114	5384206	0	-	0.51	(0.476,0.515]	chr12	513479	993	INTRON	INTRON	ENSG00000289605	ENSG00000289605.1	ENST00000685093.1	lncRNA	lncRNA	lncRNA	lncRNA	1	34	2	2.40608	3.55263	4.69918	0.0425709	0.00400966	0.148082	0.057767
chr15	89316571	89316660	6256963	0	-	0.483146	(0.476,0.515]	chr15	596918	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	POLG	ENSG00000140521.17	ENST00000635831.1:ENST00000631044.2:ENST00000442287.6:ENST00000268124.11:ENST00000672695.1:ENST00000530292.3:ENST00000637264.1:ENST00000635986.2:ENST00000672923.2:ENST00000666746.1:ENST00000672071.1:ENST00000637238.1:ENST00000526671.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	34	2	2.40608	3.55263	4.69918	0.0425709	0.00400966	0.148082	0.057767
chr16	23916840	23916940	6324569	0	+	0.5	(0.476,0.515]	chr16	605701	231	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000498739.1	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	2.40608	3.55263	4.69918	0.0425709	0.00400966	0.148082	0.057767
chr7	66579127	66579227	3539983	0	-	0.48	(0.476,0.515]	chr7	330269	4	SS3_PROX	SS3_PROX:INTRON	RABGEF1P1	ENSG00000229180.8	ENST00000639011.1:ENST00000692299.1:ENST00000686269.1:ENST00000649635.1:ENST00000686397.1:ENST00000690339.1:ENST00000638711.1:ENST00000692179.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	1	34	2	2.40608	3.55263	4.69918	0.0425709	0.00400966	0.148082	0.057767
chr15	94884031	94884131	6105469	0	+	0.45	(0.44,0.476]	chr15	581666	268	INTRON	INTRON	ENSG00000277654	ENSG00000277654.6	ENST00000618611.4:ENST00000648065.1:ENST00000618377.1:ENST00000621842.4:ENST00000615751.4:ENST00000614581.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	2	43	2	2.27304	3.55253	4.83202	0.0158915	0.00525002	0.109464	0.0633615
chr2	241747539	241747637	1056435	0	+	0.377551	(0.35,0.378]	chr2	112660	23	INTRON	INTRON	D2HGDH	ENSG00000180902.18	ENST00000403782.5:ENST00000436747.5:ENST00000321264.9:ENST00000400769.6:ENST00000437164.1:ENST00000454048.1:ENST00000417686.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	51	2	2.28125	3.55251	4.82377	0.0182271	0.00325499	0.107842	0.0524329
chr11	68514228	68514328	4817869	0	+	0.46	(0.44,0.476]	chr11	448913	86	INTRON	INTRON	PPP6R3	ENSG00000110075.15	ENST00000530427.5:ENST00000528635.5:ENST00000529907.5:ENST00000533127.5:ENST00000534534.5:ENST00000529344.5:ENST00000524845.5:ENST00000393800.7:ENST00000265637.8:ENST00000524904.5:ENST00000393801.7:ENST00000265636.9:ENST00000529710.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	115	2	2.59185	3.552495	4.51314	0.00200767	3.45304e-6	0.0408395	0.00120859
chr19	5597992	5598092	7124097	0	-	0.58	(0.57,1]	chr19	716986	21	INTRON	INTRON	SAFB2	ENSG00000130254.12	ENST00000252542.9	protein_coding	protein_coding	protein_coding	protein_coding	2	29	2	2.05026	3.5523750000000005	5.05449	0.0321326	1.79828e-4	0.145026	0.0121697
chr12	70306309	70306408	5167071	0	+	0.464646	(0.44,0.476]	chr12	489415	41	INTRON	INTRON	CNOT2	ENSG00000111596.14	ENST00000547780.5:ENST00000418359.7:ENST00000552319.5:ENST00000550160.5:ENST00000551661.5:ENST00000551132.5:ENST00000548021.5:ENST00000550641.6:ENST00000229195.8:ENST00000552915.5:ENST00000549443.5:ENST00000552483.5:ENST00000552422.5:ENST00000547321.5:ENST00000553020.5:ENST00000548159.5:ENST00000549750.5:ENST00000551043.5:ENST00000548599.5:ENST00000550194.5:ENST00000551873.5:ENST00000547867.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	43	2	2.0776	3.552315	5.02703	0.0292951	0.00278015	0.141862	0.0469265
chr2	86193225	86193325	1171146	0	-	0.46	(0.44,0.476]	chr2	125001	115	INTRON	INTRON	IMMT	ENSG00000132305.22	ENST00000449247.6:ENST00000254636.9:ENST00000410111.8:ENST00000442664.6:ENST00000409051.6:ENST00000474969.5:ENST00000409258.2:ENST00000486633.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	43	2	2.0776	3.552315	5.02703	0.0292951	0.00278015	0.141862	0.0469265
chr19	41885684	41885783	7071956	0	+	0.525253	(0.515,0.57]	chr19	706922	8	INTRON	INTRON	ARHGEF1	ENSG00000076928.18	ENST00000600387.5:ENST00000600274.5:ENST00000354532.8:ENST00000599846.5:ENST00000596957.1:ENST00000347545.8:ENST00000378152.8:ENST00000337665.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	47	2	2.06206	3.552155	5.04225	0.0135396	0.00131841	0.101363	0.0331539
chr6	10775791	10775891	2810960	0	+	0.53	(0.515,0.57]	chr6	264506	52	INTRON	INTRON	TMEM14B	ENSG00000137210.14	ENST00000463448.5:ENST00000473166.5:ENST00000460341.5:ENST00000473807.5:ENST00000463100.5:ENST00000478732.1:ENST00000467229.1:ENST00000489137.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	3	47	2	2.06206	3.552155	5.04225	0.0135396	0.00131841	0.101363	0.0331539
chr7	64532113	64532213	3537009	0	-	0.55	(0.515,0.57]	chr7	329904	52	INTRON	INTRON	ZNF680	ENSG00000173041.12	ENST00000309683.11:ENST00000476563.1:ENST00000470847.1:ENST00000447137.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	47	2	2.06206	3.552155	5.04225	0.0135396	0.00131841	0.101363	0.0331539
chr2	61313394	61313493	1128950	0	-	0.383838	(0.378,0.408]	chr2	121364	11	INTRON	INTRON	USP34	ENSG00000115464.15	ENST00000398571.7	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	2.78705	3.5520199999999997	4.31699	0.0250408	0.0135539	0.12011	0.101363
chr20	49674193	49674293	7353231	0	-	0.4	(0.378,0.408]	chr20	749846	171	INTRON	INTRON	B4GALT5	ENSG00000158470.5	ENST00000371711.4	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	2.78705	3.5520199999999997	4.31699	0.0250408	0.0135539	0.12011	0.101363
chr3	196778228	196778327	1595877	0	+	0.393939	(0.378,0.408]	chr3	165300	377	INTRON	INTRON	PAK2	ENSG00000180370.10	ENST00000327134.7	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	2.78705	3.5520199999999997	4.31699	0.0250408	0.0135539	0.12011	0.101363
chr4	159249088	159249188	2074969	0	+	0.38	(0.378,0.408]	chr4	205218	49	INTRON	INTRON	RAPGEF2	ENSG00000109756.10	ENST00000644474.1:ENST00000691494.1:ENST00000505478.5:ENST00000504604.5:ENST00000644902.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	33	2	2.78705	3.5520199999999997	4.31699	0.0250408	0.0135539	0.12011	0.101363
chr6	47556657	47556756	2874359	0	+	0.393939	(0.378,0.408]	chr6	272749	15	INTRON	INTRON	CD2AP	ENSG00000198087.7	ENST00000359314.5	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	2.78705	3.5520199999999997	4.31699	0.0250408	0.0135539	0.12011	0.101363
chr18	194377	194474	6855189	0	+	0.226804	[0,0.28]	chr18	679527	11	INTRON	INTRON	USP14	ENSG00000101557.15	ENST00000582707.5:ENST00000400266.7:ENST00000261601.8:ENST00000578942.5:ENST00000383589.6:ENST00000583119.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	65	2	1.79953	3.551885	5.30424	0.0377477	0.00584781	0.156608	0.0667594
chr22	49651726	49651826	7602605	0	-	0.38	(0.378,0.408]	chr22	778594	243	INTRON	INTRON	MIR3667HG	ENSG00000188511.13	ENST00000414287.5:ENST00000416411.1:ENST00000689875.1:ENST00000400023.5:ENST00000405854.5	lncRNA	lncRNA	lncRNA	lncRNA	3	98	2	3.27784	3.5517950000000003	3.82575	3.23711e-4	2.17147e-4	0.0165891	0.0129235
chr1	88765762	88765862	156586	0	+	0.46	(0.44,0.476]	chr1	17057	50	INTRON	INTRON	PKN2	ENSG00000065243.20	ENST00000316005.11:ENST00000370521.8:ENST00000370513.9	protein_coding	protein_coding	protein_coding	protein_coding	4	64	2	1.60467	3.5517250000000002	5.49878	0.0411383	1.52058e-4	0.1451	0.0106137
chr12	113760225	113760325	5420628	0	-	0.47	(0.44,0.476]	chr12	517968	21	INTRON	INTRON	LINC01234	ENSG00000249550.8	ENST00000661760.1:ENST00000550905.5:ENST00000663699.1:ENST00000669504.1:ENST00000661033.2:ENST00000669851.1:ENST00000551982.1:ENST00000655514.1:ENST00000662465.1:ENST00000659032.1:ENST00000547963.1:ENST00000550223.6:ENST00000657279.1:ENST00000654810.1:ENST00000510694.3:ENST00000662051.1	lncRNA	lncRNA	lncRNA	lncRNA	2	44	2	1.85146	3.551625	5.25179	0.0545846	0.00124521	0.182529	0.0322969
chr1	46354823	46354922	96820	0	+	0.454545	(0.44,0.476]	chr1	13015	14	INTRON	INTRON	NSUN4	ENSG00000117481.11	ENST00000307089.7:ENST00000486270.5:ENST00000474844.6:ENST00000537428.2:ENST00000498008.5:ENST00000495427.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	32	2	2.58033	3.551515	4.5227	0.0247511	0.0128818	0.131869	0.0926667
chr1	211308790	211308889	306203	0	+	0.464646	(0.44,0.476]	chr1	35301	43	INTRON	INTRON	RCOR3	ENSG00000117625.14	ENST00000367006.8:ENST00000419091.7:ENST00000452621.6:ENST00000528926.5:ENST00000367005.8:ENST00000534460.5:ENST00000529763.5:ENST00000485186.1:ENST00000486666.5:ENST00000528066.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	32	2	2.58033	3.551515	4.5227	0.0247511	0.0128818	0.131869	0.0926667
chr11	65887405	65887502	4967767	0	-	0.463918	(0.44,0.476]	chr11	468308	8	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	FIBP	ENSG00000172500.13	ENST00000357519.9:ENST00000338369.6:ENST00000533045.5:ENST00000533037.5:ENST00000532229.1:ENST00000532679.5:ENST00000426652.6:ENST00000528937.1:ENST00000442885.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	32	2	2.58033	3.551515	4.5227	0.0247511	0.0128818	0.131869	0.0926667
chr12	118408272	118408372	5234729	0	+	0.46	(0.44,0.476]	chr12	496660	34	INTRON	INTRON	SUDS3	ENSG00000111707.12	ENST00000543473.2:ENST00000541591.5:ENST00000541280.1:ENST00000360286.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	32	2	2.58033	3.551515	4.5227	0.0247511	0.0128818	0.131869	0.0926667
chr16	23569230	23569323	6323180	0	+	0.44086	(0.44,0.476]	chr16	605569	7	EXON_LNCRNA	EXON_LNCRNA:INTRON	UBFD1:ENSG00000260751	ENSG00000103353.16:ENSG00000260751.2	ENST00000567212.5:ENST00000395878.8:ENST00000563366.5:ENST00000565634.5:ENST00000564106.1:ENST00000566136.1:ENST00000568262.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA:processed_transcript	1	32	2	2.58033	3.551515	4.5227	0.0247511	0.0128818	0.131869	0.0926667
chr19	18454429	18454529	7152329	0	-	0.46	(0.44,0.476]	chr19	722846	24	INTRON	INTRON	ELL	ENSG00000105656.13	ENST00000262809.9:ENST00000594635.6:ENST00000596124.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	32	2	2.58033	3.551515	4.5227	0.0247511	0.0128818	0.131869	0.0926667
chr22	37840833	37840932	7586251	0	-	0.454545	(0.44,0.476]	chr22	776460	2	INTRON	INTRON	ANKRD54	ENSG00000100124.15	ENST00000215941.9:ENST00000406423.5:ENST00000609454.5:ENST00000411961.6:ENST00000458278.6:ENST00000407117.6:ENST00000413497.5:ENST00000424350.5:ENST00000434930.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	32	2	2.58033	3.551515	4.5227	0.0247511	0.0128818	0.131869	0.0926667
chr3	47733454	47733553	1684588	0	-	0.474747	(0.44,0.476]	chr3	172094	40	INTRON	INTRON	SMARCC1	ENSG00000173473.11	ENST00000254480.10:ENST00000425518.5:ENST00000485833.1:ENST00000454240.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	32	2	2.58033	3.551515	4.5227	0.0247511	0.0128818	0.131869	0.0926667
chr3	155881641	155881740	1537237	0	+	0.454545	(0.44,0.476]	chr3	160082	104	INTRON	INTRON	GMPS	ENSG00000163655.16	ENST00000496455.7:ENST00000295920.7	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	2.58033	3.551515	4.5227	0.0247511	0.0128818	0.131869	0.0926667
chr6	42074825	42074923	2864924	0	+	0.459184	(0.44,0.476]	chr6	270992	30	INTRON	INTRON	TAF8	ENSG00000137413.17	ENST00000686935.1:ENST00000372982.8:ENST00000456846.6:ENST00000494547.5:ENST00000372977.8:ENST00000688562.1:ENST00000686229.1:ENST00000687601.1:ENST00000688007.1:ENST00000687266.1:ENST00000465926.5:ENST00000685500.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	32	2	2.58033	3.551515	4.5227	0.0247511	0.0128818	0.131869	0.0926667
chr12	62559129	62559226	5152113	0	+	0.319588	(0.28,0.32]	chr12	487597	26	INTRON	INTRON	MON2	ENSG00000061987.16	ENST00000641654.1:ENST00000546600.5:ENST00000393630.8:ENST00000547095.5:ENST00000552738.5:ENST00000393629.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	52	2	2.51426	3.551505	4.58875	0.0230574	0.00781326	0.118056	0.0788246
chr17	46188620	46188720	6784827	0	-	0.38	(0.378,0.408]	chr17	669245	160	INTRON	INTRON	KANSL1	ENSG00000120071.15	ENST00000574590.6:ENST00000572904.6:ENST00000432791.7:ENST00000575318.6:ENST00000638275.1:ENST00000262419.10:ENST00000648792.1:ENST00000639150.1:ENST00000571698.2:ENST00000639375.1:ENST00000638269.1:ENST00000639356.1:ENST00000574655.6:ENST00000639099.1:ENST00000638902.1:ENST00000576739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	33	2	2.36428	3.551335	4.73839	0.0441088	0.00837252	0.162255	0.0774402
chr22	32476457	32476555	7507732	0	+	0.387755	(0.378,0.408]	chr22	766215	1	INTRON	INTRON	FBXO7	ENSG00000100225.18	ENST00000420700.5:ENST00000425028.5:ENST00000266087.12:ENST00000492535.1:ENST00000452138.3:ENST00000397426.5:ENST00000444207.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	33	2	2.36428	3.551335	4.73839	0.0441088	0.00837252	0.162255	0.0774402
chr1	100099273	100099372	515517	0	-	0.373737	(0.35,0.378]	chr1	60434	107	INTRON	INTRON	SASS6	ENSG00000156876.10	ENST00000462159.1:ENST00000287482.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	76	2	1.26902	3.55132	5.83362	0.0635011	2.04087e-4	0.19815	0.0129859
chr7	155306264	155306362	3451850	0	+	0.469388	(0.44,0.476]	chr7	322633	20	INTRON	INTRON	INSIG1	ENSG00000186480.13	ENST00000344756.8:ENST00000340368.9:ENST00000342407.5:ENST00000476756.1	protein_coding	protein_coding	protein_coding	protein_coding	4	59	2	1.75023	3.55125	5.35227	0.0240995	8.47974e-4	0.129929	0.0267232
chr12	56639807	56639879	5335746	0	-	0.458333	(0.44,0.476]	chr12	510116	1	SS5_PROX	SS5_PROX:INTRON	ATP5F1B	ENSG00000110955.9	ENST00000262030.8:ENST00000548474.2:ENST00000547808.5:ENST00000547250.5:ENST00000551020.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	72	2	2.20226	3.55113	4.9	0.00423315	0.00238044	0.0572185	0.0449397
chr22	21794552	21794651	7560652	0	-	0.515152	(0.476,0.515]	chr22	773370	54	INTRON	INTRON	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	2	46	2	2.10874	3.5510800000000002	4.99342	0.0285608	0.00139274	0.12666	0.0341261
chr1	36241923	36242022	73106	0	+	0.333333	(0.32,0.35]	chr1	9371	161	INTRON	INTRON	THRAP3	ENSG00000054118.15	ENST00000469141.6:ENST00000648638.1:ENST00000354618.10	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	2.30673	3.550775	4.79482	0.0584434	0.00447781	0.167723	0.0610799
chr15	44583413	44583513	6163928	0	-	0.34	(0.32,0.35]	chr15	587256	2	SS5_PROX	SS5_PROX:INTRON	SPG11	ENSG00000104133.16	ENST00000684235.1:ENST00000261866.12:ENST00000559511.6:ENST00000682065.1:ENST00000682669.1:ENST00000683496.1:ENST00000682460.1:ENST00000682495.1:ENST00000684038.1:ENST00000683186.1:ENST00000683734.1:ENST00000683753.1:ENST00000535302.6:ENST00000427534.6:ENST00000561391.2:ENST00000558319.5:ENST00000684676.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	38	2	2.30673	3.550775	4.79482	0.0584434	0.00447781	0.167723	0.0610799
chr8	39019112	39019209	3738511	0	+	0.28866000000000003	(0.28,0.32]	chr8	347492	3	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	ADAM9	ENSG00000168615.13	ENST00000678474.1:ENST00000676765.1:ENST00000676936.1:ENST00000677908.1:ENST00000677004.1:ENST00000677165.1:ENST00000481058.2:ENST00000676643.1:ENST00000676669.1:ENST00000679268.1:ENST00000677582.1:ENST00000676617.1:ENST00000677137.1:ENST00000678540.1:ENST00000677359.1:ENST00000678730.1:ENST00000487273.7:ENST00000678253.1:ENST00000676489.1:ENST00000379917.7:ENST00000468065.5:ENST00000481873.7:ENST00000676919.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	94	2	1.66573	3.550715	5.4357	0.01452	0.00215368	0.105503	0.0417866
chr1	8554678	8554777	371144	0	-	0.343434	(0.32,0.35]	chr1	43505	130	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000400907.6:ENST00000656437.1:ENST00000659924.1:ENST00000480342.5:ENST00000469251.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	82	2	3.4862	3.5506349999999998	3.61507	0.001711	6.48785e-4	0.037419	0.0230814
chr3	47656709	47656809	1683797	0	-	0.47	(0.44,0.476]	chr3	171996	176	INTRON	INTRON	SMARCC1	ENSG00000173473.11	ENST00000254480.10:ENST00000425518.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	56	2	1.85904	3.5505750000000003	5.24211	0.029889	4.87398e-4	0.129138	0.0199652
chr5	65700594	65700694	2635039	0	-	0.58	(0.57,1]	chr5	250323	148	INTRON	INTRON	SGTB	ENSG00000197860.10	ENST00000381007.9:ENST00000506816.1	protein_coding	protein_coding	protein_coding	protein_coding	4	62	2	2.81549	3.55056	4.28563	3.90081e-4	5.27255e-6	0.0177751	0.00170345
chr1	26904259	26904358	52576	0	+	0.484848	(0.476,0.515]	chr1	6740	15	INTRON	INTRON	NUDC	ENSG00000090273.14	ENST00000435827.6	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	2.3223	3.5504299999999995	4.77856	0.0519312	0.00305743	0.159306	0.0509893
chr22	41157608	41157708	7522166	0	+	0.5	(0.476,0.515]	chr22	768617	2	SS5_PROX	SS5_PROX:INTRON	EP300	ENSG00000100393.14	ENST00000263253.9:ENST00000674155.1:ENST00000635691.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	34	2	2.3223	3.5504299999999995	4.77856	0.0519312	0.00305743	0.159306	0.0509893
chr4	2852423	2852523	1915109	0	+	0.5	(0.476,0.515]	chr4	192245	72	INTRON	INTRON	ADD1	ENSG00000087274.19	ENST00000683351.1:ENST00000398125.5:ENST00000264758.11:ENST00000508684.5:ENST00000510101.5:ENST00000511797.5:ENST00000539108.5:ENST00000513328.6:ENST00000509039.5:ENST00000508277.5:ENST00000503455.6:ENST00000540541.1:ENST00000355842.7:ENST00000651918.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	34	2	2.3223	3.5504299999999995	4.77856	0.0519312	0.00305743	0.159306	0.0509893
chr7	65063301	65063400	3321625	0	+	0.494949	(0.476,0.515]	chr7	308810	244	INTRON	INTRON	CCT6P3	ENSG00000234585.6	ENST00000419314.5:ENST00000426828.5	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript	1	34	2	2.3223	3.5504299999999995	4.77856	0.0519312	0.00305743	0.159306	0.0509893
chrX	1594724	1594803	7606344	0	+	0.506329	(0.476,0.515]	chrX	779581	1	INTRON	INTRON	AKAP17A	ENSG00000197976.12	ENST00000313871.9:ENST00000474361.6:ENST00000381261.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	34	2	2.3223	3.5504299999999995	4.77856	0.0519312	0.00305743	0.159306	0.0509893
chr1	10611942	10612042	24353	0	+	0.31	(0.28,0.32]	chr1	2524	122	INTRON	INTRON	PEX14	ENSG00000142655.13	ENST00000356607.9:ENST00000491661.2	protein_coding	protein_coding	protein_coding	protein_coding	1	37	2	2.67453	3.550415	4.4263	0.0330296	0.021289	0.133816	0.123318
chr10	35343297	35343397	4424570	0	+	0.32	(0.28,0.32]	chr10	407899	57	INTRON	INTRON	CCNY	ENSG00000108100.18	ENST00000374706.5:ENST00000490012.6:ENST00000493157.6:ENST00000374704.8:ENST00000265375.13:ENST00000339497.7:ENST00000492478.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	37	2	2.67453	3.550415	4.4263	0.0330296	0.021289	0.133816	0.123318
chr14	103490662	103490758	5826722	0	+	0.302083	(0.28,0.32]	chr14	552930	17	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	MARK3	ENSG00000075413.19	ENST00000678179.1:ENST00000676838.1:ENST00000677348.1:ENST00000677404.1:ENST00000676694.1:ENST00000676938.1:ENST00000678619.1:ENST00000676897.1:ENST00000677214.1:ENST00000677942.1:ENST00000676830.1:ENST00000678999.1:ENST00000677228.1:ENST00000556744.2:ENST00000677104.1:ENST00000679330.1:ENST00000560417.6:ENST00000440884.7:ENST00000677035.1:ENST00000678022.1:ENST00000677560.1:ENST00000561314.6:ENST00000429436.7:ENST00000677118.1:ENST00000676564.1:ENST00000678169.1:ENST00000678175.1:ENST00000678897.1:ENST00000678278.1:ENST00000676645.1:ENST00000677829.1:ENST00000678302.1:ENST00000677133.1:ENST00000678207.1:ENST00000677360.1:ENST00000676905.1:ENST00000678343.1:ENST00000677347.1:ENST00000678071.1:ENST00000677432.1:ENST00000678237.1:ENST00000677604.1:ENST00000676518.1:ENST00000677051.1:ENST00000677857.1:ENST00000677869.1:ENST00000416682.6:ENST00000303622.13:ENST00000216288.11:ENST00000679105.1:ENST00000553942.5:ENST00000335102.9:ENST00000678091.1:ENST00000561071.5:ENST00000676745.1:ENST00000554627.5:ENST00000559274.1:ENST00000679299.1:ENST00000678661.1:ENST00000677352.1:ENST00000676944.1:ENST00000677023.1:ENST00000678213.1:ENST00000678373.1:ENST00000679005.1:ENST00000556463.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	37	2	2.67453	3.550415	4.4263	0.0330296	0.021289	0.133816	0.123318
chr15	42184016	42184103	6155095	0	-	0.310345	(0.28,0.32]	chr15	585735	1	SS5_PROX	SS5_PROX:INTRON	VPS39	ENSG00000166887.16	ENST00000318006.10:ENST00000348544.4	protein_coding	protein_coding	protein_coding	protein_coding	1	37	2	2.67453	3.550415	4.4263	0.0330296	0.021289	0.133816	0.123318
chr17	59643775	59643875	6641802	0	+	0.3	(0.28,0.32]	chr17	648528	1	SS3_PROX	SS3_PROX:INTRON	CLTC	ENSG00000141367.12	ENST00000621829.4:ENST00000393043.5:ENST00000269122.8:ENST00000580081.1:ENST00000579456.5:ENST00000584313.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	37	2	2.67453	3.550415	4.4263	0.0330296	0.021289	0.133816	0.123318
chr4	73207293	73207393	2160311	0	-	0.3	(0.28,0.32]	chr4	212794	294	INTRON	INTRON	ANKRD17	ENSG00000132466.20	ENST00000358602.9:ENST00000558247.5:ENST00000330838.10:ENST00000509867.6:ENST00000561029.1:ENST00000559367.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	37	2	2.67453	3.550415	4.4263	0.0330296	0.021289	0.133816	0.123318
chr8	123260602	123260702	4041684	0	-	0.31	(0.28,0.32]	chr8	368617	30	INTRON	INTRON	ZHX1-C8orf76:ZHX1	ENSG00000259305.6:ENSG00000165156.15	ENST00000357082.8:ENST00000622816.2:ENST00000297857.3:ENST00000395571.8:ENST00000517516.1:ENST00000522655.5:ENST00000522595.5:ENST00000524267.5:ENST00000480132.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	37	2	2.67453	3.550415	4.4263	0.0330296	0.021289	0.133816	0.123318
chr1	32365328	32365427	414889	0	-	0.424242	(0.408,0.44]	chr1	50029	8	UTR3	UTR3:EXON_MRNA	BSDC1	ENSG00000160058.19	ENST00000455895.7:ENST00000444377.5:ENST00000341071.11	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	130	2	2.82797	3.5503850000000003	4.2728	1.76514e-4	3.11754e-5	0.0115835	0.0046673
chr22	49538073	49538172	7601460	0	-	0.40404	(0.378,0.408]	chr22	778566	965	INTRON	INTRON	MIR3667HG	ENSG00000188511.13	ENST00000414287.5:ENST00000416411.1	lncRNA	lncRNA	lncRNA	lncRNA	4	119	2	2.73774	3.5503600000000004	4.36298	0.00113735	9.6198e-6	0.0307766	0.00224473
chr1	21161167	21161267	393473	0	-	0.48	(0.476,0.515]	chr1	46836	482	INTRON	INTRON	EIF4G3	ENSG00000075151.24	ENST00000374935.7:ENST00000602326.6:ENST00000685872.1:ENST00000686579.1:ENST00000688741.1:ENST00000400422.6:ENST00000634879.2:ENST00000693470.1:ENST00000685814.1:ENST00000356916.7:ENST00000682284.1:ENST00000438975.5:ENST00000411888.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	34	2	2.48527	3.55023	4.61519	0.03496	0.00528365	0.13747500000000001	0.0656295
chr1	200654340	200654440	618064	0	-	0.49	(0.476,0.515]	chr1	73137	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	DDX59	ENSG00000118197.14	ENST00000447706.6:ENST00000331314.11:ENST00000429498.5:ENST00000433235.1:ENST00000453944.1	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	2.48527	3.55023	4.61519	0.03496	0.00528365	0.13747500000000001	0.0656295
chr10	80461892	80461991	4476305	0	+	0.484848	(0.476,0.515]	chr10	412056	20	INTRON	INTRON	TSPAN14	ENSG00000108219.15	ENST00000429989.7:ENST00000481124.5:ENST00000372158.6:ENST00000372157.6:ENST00000469149.1:ENST00000372164.7:ENST00000341863.10:ENST00000372156.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	34	2	2.48527	3.55023	4.61519	0.03496	0.00528365	0.13747500000000001	0.0656295
chr14	77712429	77712527	5799546	0	+	0.489796	(0.476,0.515]	chr14	549452	5	INTRON	INTRON	SLIRP	ENSG00000119705.10	ENST00000613856.4:ENST00000238688.9:ENST00000557431.5:ENST00000557623.5:ENST00000557342.6:ENST00000555890.5:ENST00000556831.5:ENST00000556310.1:ENST00000556375.5:ENST00000553981.1:ENST00000556956.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	34	2	2.48527	3.55023	4.61519	0.03496	0.00528365	0.13747500000000001	0.0656295
chr3	129470516	129470616	1500159	0	+	0.51	(0.476,0.515]	chr3	156793	7	INTRON	INTRON	IFT122	ENSG00000163913.14	ENST00000693654.1:ENST00000687461.1:ENST00000440957.7:ENST00000688129.1:ENST00000689313.1:ENST00000689801.1:ENST00000691583.1:ENST00000347300.6:ENST00000685282.1:ENST00000692242.1:ENST00000687377.1:ENST00000693489.1:ENST00000687645.1:ENST00000689643.1:ENST00000688970.1:ENST00000512157.6:ENST00000692228.1:ENST00000693114.1:ENST00000690862.1:ENST00000689332.1:ENST00000685921.1:ENST00000691770.1:ENST00000692985.1:ENST00000685447.1:ENST00000693162.1:ENST00000692391.1:ENST00000686531.1:ENST00000693129.1:ENST00000689796.1:ENST00000685939.1:ENST00000686830.1:ENST00000687791.1:ENST00000686473.1:ENST00000690723.1:ENST00000689871.1:ENST00000688504.1:ENST00000691964.1:ENST00000686375.1:ENST00000691733.1:ENST00000691705.1:ENST00000690209.1:ENST00000687864.1:ENST00000689819.1:ENST00000296266.7:ENST00000689492.1:ENST00000687398.1:ENST00000690663.1:ENST00000693588.1:ENST00000690677.1:ENST00000688664.1:ENST00000431818.8:ENST00000507564.5:ENST00000693233.1:ENST00000504021.6:ENST00000348417.7:ENST00000692901.1:ENST00000515783.6:ENST00000688020.1:ENST00000512220.5:ENST00000349441.6:ENST00000689005.1:ENST00000691641.1:ENST00000692321.1:ENST00000685087.1:ENST00000692728.1:ENST00000691360.1:ENST00000685189.1:ENST00000687766.1:ENST00000687845.1:ENST00000692508.1:ENST00000506507.5:ENST00000509815.1:ENST00000690617.1:ENST00000685811.1:ENST00000689384.1:ENST00000688392.1:ENST00000688266.1:ENST00000511498.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	34	2	2.48527	3.55023	4.61519	0.03496	0.00528365	0.13747500000000001	0.0656295
chr12	48703569	48703669	5319438	0	-	0.26	[0,0.28]	chr12	506418	21	INTRON	INTRON	CCNT1	ENSG00000129315.11	ENST00000618666.4:ENST00000261900.8:ENST00000417344.2:ENST00000640148.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	54	2	2.15457	3.55009	4.94561	0.0269306	0.0150263	0.135288	0.0994339
chr12	62561513	62561613	5152138	0	+	0.19	[0,0.28]	chr12	487601	4	SS5_PROX	SS5_PROX:INTRON	MON2	ENSG00000061987.16	ENST00000641654.1:ENST00000546600.5:ENST00000393630.8:ENST00000547095.5:ENST00000552738.5:ENST00000393629.6:ENST00000551307.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	54	2	2.15457	3.55009	4.94561	0.0269306	0.0150263	0.135288	0.0994339
chr15	58595467	58595567	6191951	0	-	0.27	[0,0.28]	chr15	589880	68	UTR3	UTR3:EXON_MRNA	ADAM10	ENSG00000137845.15	ENST00000260408.8	protein_coding	protein_coding	protein_coding	protein_coding	2	54	2	2.15457	3.55009	4.94561	0.0269306	0.0150263	0.135288	0.0994339
chr2	61262045	61262143	1128410	0	-	0.265306	[0,0.28]	chr2	121271	19	INTRON	INTRON	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000472706.5:ENST00000453734.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	54	2	2.15457	3.55009	4.94561	0.0269306	0.0150263	0.135288	0.0994339
chr8	38123856	38123955	3734865	0	+	0.474747	(0.44,0.476]	chr8	347004	15	INTRON	INTRON	ASH2L	ENSG00000129691.16	ENST00000545394.2:ENST00000343823.11:ENST00000517496.5:ENST00000428278.6:ENST00000521652.5:ENST00000518186.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	47	2	2.24189	3.5500300000000005	4.85817	0.0193405	0.00223254	0.108861	0.0435144
chr2	169597397	169597496	906601	0	+	0.50505	(0.476,0.515]	chr2	100021	43	INTRON	INTRON	PPIG	ENSG00000138398.17	ENST00000678088.1:ENST00000677392.1:ENST00000433207.6:ENST00000679324.1:ENST00000414307.6:ENST00000676508.1:ENST00000260970.8:ENST00000678695.1:ENST00000409714.7:ENST00000530152.5:ENST00000677750.1:ENST00000676557.1:ENST00000678721.1:ENST00000462903.6:ENST00000676756.1:ENST00000679107.1:ENST00000678499.1:ENST00000678638.1:ENST00000448752.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	43	2	2.26034	3.5499799999999997	4.83962	0.0166235	0.00480934	0.110511	0.0602209
chr5	126943097	126943197	2713683	0	-	0.5	(0.476,0.515]	chr5	255272	245	INTRON	INTRON	MARCHF3	ENSG00000173926.6	ENST00000308660.6:ENST00000502289.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	43	2	2.26034	3.5499799999999997	4.83962	0.0166235	0.00480934	0.110511	0.0602209
chr15	25382256	25382356	6121258	0	-	0.44	(0.408,0.44]	chr15	582883	61	INTRON	INTRON	UBE3A	ENSG00000114062.22	ENST00000648336.2:ENST00000438097.6:ENST00000635914.1:ENST00000638155.1:ENST00000637886.1:ENST00000638011.1:ENST00000649550.1:ENST00000650110.1:ENST00000630424.2:ENST00000566215.5:ENST00000428984.6:ENST00000675177.1:ENST00000675593.1:ENST00000625778.3:ENST00000675000.1:ENST00000626068.2:ENST00000626793.2:ENST00000628733.2:ENST00000630907.2:ENST00000675038.1:ENST00000630607.2:ENST00000629886.2:ENST00000628267.2:ENST00000629252.2:ENST00000628890.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	43	2	2.27464	3.54997	4.8253	0.0158016	0.0056738	0.109464	0.0653997
chr17	46197096	46197196	6784915	0	-	0.43	(0.408,0.44]	chr17	669254	33	INTRON	INTRON	KANSL1	ENSG00000120071.15	ENST00000574590.6:ENST00000572904.6:ENST00000575318.6:ENST00000648792.1:ENST00000639150.1:ENST00000639375.1:ENST00000638269.1:ENST00000639356.1:ENST00000574655.6:ENST00000639099.1:ENST00000638902.1:ENST00000576739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	43	2	2.27464	3.54997	4.8253	0.0158016	0.0056738	0.109464	0.0653997
chr4	741388	741487	1908152	0	+	0.424242	(0.408,0.44]	chr4	191240	35	INTRON	INTRON	PCGF3	ENSG00000185619.18	ENST00000362003.9:ENST00000470161.6:ENST00000430644.5:ENST00000440452.5:ENST00000433814.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	43	2	2.27464	3.54997	4.8253	0.0158016	0.0056738	0.109464	0.0653997
chr2	15523745	15523845	1072786	0	-	0.46	(0.44,0.476]	chr2	114441	120	INTRON	INTRON	NBAS	ENSG00000151779.13	ENST00000281513.10	protein_coding	protein_coding	protein_coding	protein_coding	9	180	2	2.46089	3.54995	4.63901	1.54888e-4	3.61261e-6	0.0106835	0.0013551
chr1	50956071	50956171	452214	0	-	0.29	(0.28,0.32]	chr1	54267	977	INTRON	INTRON	FAF1	ENSG00000185104.21	ENST00000396153.7:ENST00000487898.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	37	2	2.29724	3.5498950000000002	4.80255	0.0554156	0.0137406	0.18407	0.0949306
chr1	169808029	169808129	252212	0	+	0.3	(0.28,0.32]	chr1	29896	1	SS5_PROX	SS5_PROX:INTRON	C1orf112	ENSG00000000460.17	ENST00000498289.5:ENST00000359326.9:ENST00000459772.5:ENST00000466580.6:ENST00000286031.10:ENST00000413811.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	37	2	2.29724	3.5498950000000002	4.80255	0.0554156	0.0137406	0.18407	0.0949306
chr17	81893714	81893798	6691447	0	+	0.297619	(0.28,0.32]	chr17	654258	1	SS5_PROX	SS5_PROX:INTRON	ANAPC11	ENSG00000141552.18	ENST00000571570.5:ENST00000572639.5:ENST00000612413.4:ENST00000579978.5:ENST00000571024.6:ENST00000344877.10:ENST00000577425.5:ENST00000582222.5:ENST00000574924.6:ENST00000572851.6:ENST00000357385.7:ENST00000584314.5:ENST00000571874.6:ENST00000578550.5:ENST00000577747.5:ENST00000579133.5:ENST00000392376.7:ENST00000584197.5:ENST00000583839.1:ENST00000578544.1	protein_coding	protein_coding	protein_coding	protein_coding	1	37	2	2.29724	3.5498950000000002	4.80255	0.0554156	0.0137406	0.18407	0.0949306
chr19	21167766	21167866	7040217	0	+	0.3	(0.28,0.32]	chr19	701942	1	SS5_PROX	SS5_PROX:INTRON	ZNF431	ENSG00000196705.8	ENST00000600692.5:ENST00000599296.5:ENST00000594425.5:ENST00000311048.11:ENST00000598331.1	protein_coding	protein_coding	protein_coding	protein_coding	1	37	2	2.29724	3.5498950000000002	4.80255	0.0554156	0.0137406	0.18407	0.0949306
chr2	70700852	70700951	1153640	0	-	0.30303	(0.28,0.32]	chr2	123272	41	INTRON	INTRON	ADD2	ENSG00000075340.23	ENST00000403045.6:ENST00000264436.9:ENST00000407644.6:ENST00000355733.7:ENST00000522886.5:ENST00000456320.7:ENST00000413157.6:ENST00000430656.5:ENST00000415348.5:ENST00000425976.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	37	2	2.29724	3.5498950000000002	4.80255	0.0554156	0.0137406	0.18407	0.0949306
chr21	44018140	44018240	7415090	0	+	0.3	(0.28,0.32]	chr21	755783	52	INTRON	INTRON	TRAPPC10	ENSG00000160218.13	ENST00000291574.9:ENST00000380221.7:ENST00000422875.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	37	2	2.29724	3.5498950000000002	4.80255	0.0554156	0.0137406	0.18407	0.0949306
chr5	6617549	6617649	2566617	0	-	0.31	(0.28,0.32]	chr5	245932	2	SS5_PROX	SS5_PROX:INTRON	NSUN2	ENSG00000037474.15	ENST00000264670.11:ENST00000504374.5:ENST00000505892.5:ENST00000506139.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	37	2	2.29724	3.5498950000000002	4.80255	0.0554156	0.0137406	0.18407	0.0949306
chr9	99106700	99106800	4175450	0	+	0.32	(0.28,0.32]	chr9	380654	10	INTRON	INTRON	TGFBR1	ENSG00000106799.13	ENST00000547314.5:ENST00000552573.6:ENST00000374990.6:ENST00000374994.9:ENST00000552516.5:ENST00000549766.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	37	2	2.29724	3.5498950000000002	4.80255	0.0554156	0.0137406	0.18407	0.0949306
chr3	11320576	11320675	1364882	0	+	0.343434	(0.32,0.35]	chr3	143872	47	INTRON	INTRON	ATG7	ENSG00000197548.13	ENST00000693202.1:ENST00000435760.6:ENST00000685771.1:ENST00000354449.7:ENST00000354956.9:ENST00000446450.6:ENST00000488924.5:ENST00000424071.5:ENST00000434066.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	39	2	2.6321	3.5498399999999997	4.46758	0.0268	0.0119306	0.123349	0.0962115
chr3	122724234	122724333	1489263	0	+	0.343434	(0.32,0.35]	chr3	155627	17	INTRON	INTRON	PARP14	ENSG00000173193.15	ENST00000474629.7:ENST00000649945.1:ENST00000460683.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	39	2	2.6321	3.5498399999999997	4.46758	0.0268	0.0119306	0.123349	0.0962115
chr10	96920131	96920231	4503850	0	+	0.37	(0.35,0.378]	chr10	414561	120	INTRON	INTRON	LCOR	ENSG00000196233.14	ENST00000676067.1:ENST00000676257.1:ENST00000676187.1:ENST00000675151.1:ENST00000675687.1:ENST00000675251.1:ENST00000676123.1:ENST00000371103.8:ENST00000675471.1:ENST00000421806.4:ENST00000675902.1:ENST00000540664.6:ENST00000676414.1:ENST00000675537.1:ENST00000675117.1:ENST00000675125.1:ENST00000356016.7:ENST00000371097.8:ENST00000676381.1:ENST00000674796.1:ENST00000674725.1:ENST00000675971.1:ENST00000676373.1:ENST00000493486.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	37	2	2.60341	3.549835	4.49626	0.0275785	0.00917582	0.123904	0.0855292
chr20	32799502	32799577	7257056	0	+	0.373333	(0.35,0.378]	chr20	737207	2	SS5_PROX	SS5_PROX:INTRON	DNMT3B	ENSG00000088305.19	ENST00000696232.1:ENST00000328111.6:ENST00000696231.1:ENST00000348286.6:ENST00000353855.6:ENST00000696233.1:ENST00000443239.7:ENST00000696235.1:ENST00000456297.6:ENST00000201963.3:ENST00000696238.1:ENST00000696239.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	37	2	2.60341	3.549835	4.49626	0.0275785	0.00917582	0.123904	0.0855292
chr4	4240879	4240979	2100734	0	-	0.48	(0.476,0.515]	chr4	208025	4	SS3_PROX	SS3_PROX:INTRON	TMEM128	ENSG00000132406.12	ENST00000382753.5:ENST00000254742.6	protein_coding	protein_coding	protein_coding	protein_coding	1	37	2	2.99852	3.5498250000000002	4.10113	0.0226984	0.0077575	0.124921	0.0757402
chr12	45761298	45761398	5123032	0	+	0.24	[0,0.28]	chr12	483303	54	INTRON	INTRON	ARID2	ENSG00000189079.17	ENST00000334344.11:ENST00000426776.5:ENST00000422737.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	40	2	2.63238	3.5498199999999995	4.46726	0.0427997	0.0259691	0.148082	0.133676
chr14	30923303	30923403	5856834	0	-	0.24	[0,0.28]	chr14	556459	38	INTRON	INTRON	STRN3	ENSG00000196792.12	ENST00000355683.9:ENST00000357479.10:ENST00000555358.5:ENST00000366206.2:ENST00000556577.1:ENST00000554991.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	40	2	2.63238	3.5498199999999995	4.46726	0.0427997	0.0259691	0.148082	0.133676
chr15	55189197	55189296	6179935	0	-	0.262626	[0,0.28]	chr15	589063	25	INTRON	INTRON	RSL24D1	ENSG00000137876.11	ENST00000260443.9:ENST00000569386.2:ENST00000677172.1:ENST00000677147.1:ENST00000562895.2:ENST00000677989.1:ENST00000677730.1:ENST00000677092.1:ENST00000562993.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	40	2	2.63238	3.5498199999999995	4.46726	0.0427997	0.0259691	0.148082	0.133676
chr15	63747583	63747623	6200025	0	-	0.225	[0,0.28]	chr15	591378	1	SS5_PROX	SS5_PROX:INTRON	HERC1	ENSG00000103657.14	ENST00000443617.7:ENST00000561400.1:ENST00000560519.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	40	2	2.63238	3.5498199999999995	4.46726	0.0427997	0.0259691	0.148082	0.133676
chr2	60891925	60892025	785721	0	+	0.25	[0,0.28]	chr2	88386	1	SS5_PROX	SS5_PROX:INTRON	REL	ENSG00000162924.15	ENST00000295025.12:ENST00000394479.4	protein_coding	protein_coding	protein_coding	protein_coding	1	40	2	2.63238	3.5498199999999995	4.46726	0.0427997	0.0259691	0.148082	0.133676
chr1	19207086	19207186	386811	0	-	0.44	(0.408,0.44]	chr1	46143	49	INTRON	INTRON	UBR4	ENSG00000127481.15	ENST00000375254.8	protein_coding	protein_coding	protein_coding	protein_coding	2	44	2	2.49983	3.54981	4.59979	0.0109537	0.00713527	0.0873034	0.0756118
chr2	111828028	111828127	1214300	0	-	0.262626	[0,0.28]	chr2	129124	18	INTRON	INTRON	ANAPC1	ENSG00000153107.13	ENST00000427997.5:ENST00000341068.8	protein_coding	protein_coding	protein_coding	protein_coding	2	54	2	1.84147	3.54981	5.25815	0.0610416	0.0066548	0.193277	0.0703807
chr3	33030296	33030371	1650473	0	-	0.44	(0.408,0.44]	chr3	169216	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GLB1	ENSG00000170266.16	ENST00000399402.7:ENST00000307363.10:ENST00000307377.12:ENST00000497796.5:ENST00000467571.5:ENST00000482097.5:ENST00000485698.5:ENST00000481581.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	44	2	2.49983	3.54981	4.59979	0.0109537	0.00713527	0.0873034	0.0756118
chr17	75661978	75662054	6838189	0	-	0.5	(0.476,0.515]	chr17	675826	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RECQL5	ENSG00000108469.15	ENST00000317905.10:ENST00000423245.6:ENST00000578201.5:ENST00000420326.6:ENST00000340830.9:ENST00000584999.1:ENST00000580078.1	protein_coding	protein_coding	protein_coding	protein_coding	2	43	2	2.06491	3.549785	5.03466	0.0304733	0.00252065	0.143385	0.0446195
chr2	131086441	131086541	1229023	0	-	0.49	(0.476,0.515]	chr2	130994	34	INTRON	INTRON	FAM168B	ENSG00000152102.18	ENST00000389915.4:ENST00000409185.5	protein_coding	protein_coding	protein_coding	protein_coding	2	44	2	2.48551	3.549765	4.61402	0.00947755	0.00756632	0.0817766	0.0773151
chr6	167923744	167923839	3035333	0	+	0.494737	(0.476,0.515]	chr6	282832	4	INTRON	INTRON	AFDN	ENSG00000130396.21	ENST00000683244.1:ENST00000351017.9:ENST00000344191.8:ENST00000392112.5:ENST00000392108.7:ENST00000400822.7:ENST00000447894.6:ENST00000366809.6:ENST00000366806.6:ENST00000511637.5:ENST00000485634.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	44	2	2.48551	3.549765	4.61402	0.00947755	0.00756632	0.0817766	0.0773151
chr3	43544719	43544819	1674661	0	-	0.43	(0.408,0.44]	chr3	170972	1116	INTRON	INTRON	ANO10	ENSG00000160746.13	ENST00000292246.8:ENST00000350459.8:ENST00000396091.7:ENST00000414522.6:ENST00000451430.6:ENST00000448045.1	protein_coding	protein_coding	protein_coding	protein_coding	2	43	2	2.07919	3.549735	5.02028	0.0291499	0.00303216	0.14147	0.0493883
chr11	125639529	125639628	4883128	0	+	0.494949	(0.476,0.515]	chr11	456586	16	INTRON	INTRON	CHEK1	ENSG00000149554.14	ENST00000438015.7:ENST00000427383.6:ENST00000428830.6:ENST00000544373.5:ENST00000278916.8:ENST00000532449.6:ENST00000534070.5:ENST00000524737.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	94	2	3.17628	3.54967	3.92306	3.6008e-4	1.72405e-4	0.0169207	0.0120625
chr10	73089579	73089679	4647774	0	-	0.24	[0,0.28]	chr10	427557	71	INTRON	INTRON	P4HA1	ENSG00000122884.13	ENST00000394890.7:ENST00000307116.6:ENST00000373008.6:ENST00000440381.5:ENST00000263556.3	protein_coding	protein_coding	protein_coding	protein_coding	1	41	2	2.80396	3.54966	4.29536	0.0590175	0.0161429	0.167915	0.109464
chr2	121666004	121666104	860700	0	+	0.23	[0,0.28]	chr2	96532	131	INTRON	INTRON	NIFK-AS1	ENSG00000236859.8	ENST00000667483.1:ENST00000662168.1:ENST00000654001.1:ENST00000659307.1:ENST00000419902.3:ENST00000690074.1:ENST00000666647.1	lncRNA	lncRNA	lncRNA	lncRNA	1	41	2	2.80396	3.54966	4.29536	0.0590175	0.0161429	0.167915	0.109464
chr2	176309744	176309844	925621	0	+	0.47	(0.44,0.476]	chr2	101688	50	INTRON	INTRON	MTX2	ENSG00000128654.14	ENST00000420864.5:ENST00000249442.11:ENST00000423461.6:ENST00000443241.5:ENST00000452865.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	59	2	1.65297	3.549585	5.4462	0.0331814	5.83686e-4	0.145918	0.0223753
chr12	31971550	31971649	5106725	0	+	0.343434	(0.32,0.35]	chr12	482333	8	INTRON	INTRON	RESF1	ENSG00000174718.12	ENST00000541981.5:ENST00000540924.5:ENST00000312561.9:ENST00000535596.5:ENST00000397578.7:ENST00000381054.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	47	2	2.13945	3.54958	4.95971	0.0254517	0.00663522	0.133676	0.0703181
chr17	7665731	7665831	6719310	0	-	0.44	(0.408,0.44]	chr17	659124	2	SS3_PROX	SS3_PROX:INTRON	TP53	ENSG00000141510.18	ENST00000413465.6:ENST00000635293.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	48	2	2.31565	3.5495650000000003	4.78348	0.0154718	0.00290352	0.100909	0.0494641
chr7	121026926	121027025	3394020	0	+	0.434343	(0.408,0.44]	chr7	317682	107	INTRON	INTRON	CPED1	ENSG00000106034.18	ENST00000340646.9:ENST00000310396.10:ENST00000428526.5:ENST00000495036.5:ENST00000450913.6:ENST00000520801.5:ENST00000521774.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	48	2	2.31565	3.5495650000000003	4.78348	0.0154718	0.00290352	0.100909	0.0494641
chr2	167923131	167923230	1259034	0	-	0.262626	[0,0.28]	chr2	133340	220	INTRON	INTRON	B3GALT1-AS1	ENSG00000235335.3	ENST00000430546.2:ENST00000657553.1:ENST00000670221.1:ENST00000436982.2	lncRNA	lncRNA	lncRNA	lncRNA	5	222	2	3.12228	3.549525	3.97677	4.515e-4	1.08345e-5	0.0196589	0.00242118
chr14	103640879	103640979	5827761	0	+	0.35	(0.32,0.35]	chr14	553054	110	INTRON	INTRON	KLC1	ENSG00000126214.22	ENST00000557172.5:ENST00000348520.10:ENST00000380038.7:ENST00000334553.11:ENST00000555467.1:ENST00000389744.8:ENST00000555836.5:ENST00000347839.10:ENST00000553286.5:ENST00000557575.5:ENST00000452929.6:ENST00000554280.5:ENST00000557450.5:ENST00000554228.5:ENST00000634686.1:ENST00000246489.11:ENST00000445352.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	47	2	2.07985	3.5495099999999997	5.01917	0.0303092	0.0055659	0.143025	0.0648867
chr17	28636664	28636764	6745068	0	-	0.34	(0.32,0.35]	chr17	662633	3	SS5_PROX	SS5_PROX:INTRON	KIAA0100	ENSG00000007202.15	ENST00000528896.7:ENST00000544884.5:ENST00000389003.7	protein_coding	protein_coding	protein_coding	protein_coding	2	47	2	2.07985	3.5495099999999997	5.01917	0.0303092	0.0055659	0.143025	0.0648867
chr19	38626902	38627002	7065616	0	+	0.34	(0.32,0.35]	chr19	705450	4	INTRON	INTRON	EIF3K	ENSG00000178982.10	ENST00000614624.4:ENST00000593149.5:ENST00000588934.5:ENST00000538434.5:ENST00000593062.5:ENST00000248342.9:ENST00000545173.6:ENST00000591409.5:ENST00000586513.4:ENST00000592558.1:ENST00000588299.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	47	2	2.07985	3.5495099999999997	5.01917	0.0303092	0.0055659	0.143025	0.0648867
chr18	1356638	1356737	6941747	0	-	0.282828	(0.28,0.32]	chr18	686589	28	INTRON	INTRON	LINC00470	ENSG00000132204.14	ENST00000657423.1:ENST00000657618.1:ENST00000584090.5:ENST00000660947.1:ENST00000669242.1:ENST00000660475.1:ENST00000653775.1:ENST00000661931.1:ENST00000412816.7:ENST00000577867.5:ENST00000584492.5:ENST00000667416.1:ENST00000661852.1:ENST00000657919.1:ENST00000661646.1:ENST00000667776.1:ENST00000654559.1:ENST00000661233.1:ENST00000653213.1:ENST00000659094.1:ENST00000660964.1:ENST00000577403.6:ENST00000660358.1:ENST00000669153.1:ENST00000657121.1:ENST00000655957.1:ENST00000659289.1:ENST00000665133.1:ENST00000671558.1:ENST00000666542.1:ENST00000663512.1:ENST00000582862.6:ENST00000578835.5:ENST00000669312.1:ENST00000581430.5:ENST00000581212.1:ENST00000658090.1:ENST00000667225.1	lncRNA	lncRNA	lncRNA	lncRNA	3	60	2	1.6633	3.5495	5.4357	0.0522231	0.00215368	0.177274	0.0417866
chr21	6335102	6335202	7364926	0	+	0.3	(0.28,0.32]	chr21	751669	51	INTRON	INTRON	ENSG00000278903	ENSG00000278903.4	ENST00000688458.1:ENST00000689306.1:ENST00000624576.3:ENST00000623738.3:ENST00000692237.1:ENST00000624165.1	lncRNA	lncRNA	lncRNA	lncRNA	3	60	2	1.6633	3.5495	5.4357	0.0522231	0.00215368	0.177274	0.0417866
chr1	155801848	155801948	563884	0	-	0.49	(0.476,0.515]	chr1	67324	63	INTRON	INTRON	GON4L	ENSG00000116580.20	ENST00000368331.6:ENST00000615926.4:ENST00000437809.5:ENST00000271883.9:ENST00000361040.9:ENST00000622608.2:ENST00000471341.5:ENST00000482386.5:ENST00000467009.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	32	2	2.56868	3.549455	4.53023	0.0256676	0.0119748	0.133676	0.0899583
chr10	12018273	12018373	4557535	0	-	0.48	(0.476,0.515]	chr10	420618	37	INTRON	INTRON	UPF2	ENSG00000151461.20	ENST00000357604.10:ENST00000356352.6:ENST00000397053.6	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	2.56868	3.549455	4.53023	0.0256676	0.0119748	0.133676	0.0899583
chr12	57427925	57428025	5339228	0	-	0.48	(0.476,0.515]	chr12	510716	318	INTRON	INTRON	R3HDM2	ENSG00000179912.21	ENST00000402412.6:ENST00000347140.7:ENST00000634871.1:ENST00000448732.1	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	2.56868	3.549455	4.53023	0.0256676	0.0119748	0.133676	0.0899583
chr12	94313517	94313616	5388624	0	-	0.484848	(0.476,0.515]	chr12	513788	1	INTRON	INTRON	CEP83	ENSG00000173588.16	ENST00000552632.5:ENST00000397809.10:ENST00000339839.9:ENST00000547232.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	32	2	2.56868	3.549455	4.53023	0.0256676	0.0119748	0.133676	0.0899583
chr12	111881512	111881609	5229130	0	+	0.505155	(0.476,0.515]	chr12	495676	6	INTRON	INTRON	MAPKAPK5	ENSG00000089022.14	ENST00000550735.7:ENST00000553053.5:ENST00000551404.6:ENST00000549875.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	32	2	2.56868	3.549455	4.53023	0.0256676	0.0119748	0.133676	0.0899583
chr19	13838340	13838440	7143303	0	-	0.38	(0.378,0.408]	chr19	721118	146	EXON_LNCRNA	EXON_LNCRNA	MIR23AHG	ENSG00000267519.6	ENST00000587762.2	lncRNA	lncRNA	lncRNA	lncRNA	2	45	2	2.51464	3.549455	4.58427	0.0128325	0.00684341	0.0926667	0.0748032
chr2	197488668	197488746	1307049	0	-	0.5	(0.476,0.515]	chr2	136767	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HSPD1	ENSG00000144381.18	ENST00000388968.8:ENST00000426480.2:ENST00000345042.6:ENST00000452200.6:ENST00000679291.1:ENST00000677403.1:ENST00000678621.1:ENST00000678545.1:ENST00000676933.1:ENST00000678170.1:ENST00000476746.6:ENST00000678969.1:ENST00000428204.6:ENST00000418022.2:ENST00000439605.2:ENST00000440114.2:ENST00000461097.2:ENST00000677792.1:ENST00000678761.1:ENST00000677913.1:ENST00000677454.1:ENST00000491249.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	32	2	2.56868	3.549455	4.53023	0.0256676	0.0119748	0.133676	0.0899583
chr7	107138553	107138653	3378109	0	+	0.51	(0.476,0.515]	chr7	316264	99	INTRON	INTRON	PRKAR2B	ENSG00000005249.13	ENST00000265717.5:ENST00000393613.6:ENST00000488792.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	32	2	2.56868	3.549455	4.53023	0.0256676	0.0119748	0.133676	0.0899583
chr9	112055232	112055332	4315565	0	-	0.48	(0.476,0.515]	chr9	396900	24	INTRON	INTRON	SUSD1	ENSG00000106868.17	ENST00000374270.8:ENST00000374263.7:ENST00000355396.7:ENST00000374264.6:ENST00000475283.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	32	2	2.56868	3.549455	4.53023	0.0256676	0.0119748	0.133676	0.0899583
chr2	74201872	74201970	813260	0	+	0.27551	[0,0.28]	chr2	90925	5	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	MTHFD2	ENSG00000065911.13	ENST00000677997.1:ENST00000677170.1:ENST00000678684.1:ENST00000409804.5:ENST00000489041.2:ENST00000470592.5:ENST00000678955.1:ENST00000394053.7:ENST00000677377.1:ENST00000679055.1:ENST00000678340.1:ENST00000477455.5:ENST00000409601.1:ENST00000678228.1:ENST00000488086.1:ENST00000462026.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	65	2	1.84046	3.549305	5.25815	0.0335889	0.0066548	0.146709	0.0703807
chr16	18558386	18558481	6456541	0	-	0.389474	(0.378,0.408]	chr16	622494	2	SS5_PROX	SS5_PROX:INTRON	NOMO2	ENSG00000185164.15	ENST00000330537.10:ENST00000381474.7:ENST00000564991.5:ENST00000621364.4:ENST00000622306.5:ENST00000543392.5:ENST00000562312.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	34	2	2.9917	3.549155	4.10661	0.0399023	0.0068789	0.143072	0.0749442
chr21	31710642	31710741	7437616	0	-	0.383838	(0.378,0.408]	chr21	758689	39	INTRON	INTRON	SCAF4	ENSG00000156304.15	ENST00000286835.12:ENST00000399804.5:ENST00000434667.3:ENST00000485790.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	34	2	2.9917	3.549155	4.10661	0.0399023	0.0068789	0.143072	0.0749442
chr4	25791569	25791668	2119904	0	-	0.40404	(0.378,0.408]	chr4	209416	6	INTRON	INTRON	SEL1L3	ENSG00000091490.11	ENST00000264868.9:ENST00000399878.8:ENST00000502949.5	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	2.9917	3.549155	4.10661	0.0399023	0.0068789	0.143072	0.0749442
chr1	31021597	31021697	412452	0	-	0.45	(0.44,0.476]	chr1	49725	141	INTRON	INTRON	PUM1	ENSG00000134644.16	ENST00000426105.7:ENST00000373747.7:ENST00000257075.9:ENST00000424085.6:ENST00000525843.5:ENST00000440538.6:ENST00000373741.8:ENST00000373742.6:ENST00000526215.5:ENST00000525948.5:ENST00000480602.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	32	2	2.66433	3.5490500000000003	4.43377	0.0194358	0.0162803	0.119831	0.101453
chr12	96304504	96304603	5394316	0	-	0.454545	(0.44,0.476]	chr12	514431	11	INTRON	INTRON	CDK17	ENSG00000059758.8	ENST00000261211.8:ENST00000543119.6:ENST00000542666.5	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	2.66433	3.5490500000000003	4.43377	0.0194358	0.0162803	0.119831	0.101453
chr13	95190040	95190140	5638753	0	-	0.45	(0.44,0.476]	chr13	537121	11	INTRON	INTRON	ABCC4	ENSG00000125257.16	ENST00000645237.2:ENST00000643051.1:ENST00000643842.1:ENST00000646439.1:ENST00000643816.1:ENST00000536256.3:ENST00000643556.1:ENST00000629385.1:ENST00000642524.1:ENST00000645532.1:ENST00000644471.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	32	2	2.66433	3.5490500000000003	4.43377	0.0194358	0.0162803	0.119831	0.101453
chr17	28145867	28145967	6583555	0	+	0.47	(0.44,0.476]	chr17	639849	128	INTRON	INTRON	NLK	ENSG00000087095.13	ENST00000407008.8:ENST00000496808.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	32	2	2.66433	3.5490500000000003	4.43377	0.0194358	0.0162803	0.119831	0.101453
chr4	48354592	48354691	1957153	0	+	0.454545	(0.44,0.476]	chr4	196116	121	INTRON	INTRON	SLAIN2	ENSG00000109171.15	ENST00000264313.11	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	2.66433	3.5490500000000003	4.43377	0.0194358	0.0162803	0.119831	0.101453
chr3	158131385	158131485	1538489	0	+	0.33	(0.32,0.35]	chr3	160262	70	INTRON	INTRON	RSRC1	ENSG00000174891.14	ENST00000480820.5:ENST00000494002.5:ENST00000295930.7:ENST00000471994.5:ENST00000683733.1:ENST00000682221.1:ENST00000683831.1:ENST00000683516.1:ENST00000482822.3:ENST00000476899.6:ENST00000464171.5:ENST00000611884.5:ENST00000682164.1:ENST00000684604.1:ENST00000683899.1:ENST00000682500.1:ENST00000684683.1:ENST00000684512.1:ENST00000683394.1:ENST00000684156.1:ENST00000312179.10:ENST00000475278.6:ENST00000480119.5:ENST00000468344.5:ENST00000471911.5:ENST00000683137.1:ENST00000477788.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	38	2	2.23182	3.54902	4.86622	0.068598	0.00354075	0.184298	0.0546236
chr5	28986864	28986963	2331621	0	+	0.323232	(0.32,0.35]	chr5	225139	597	INTRON	INTRON	LINC02109	ENSG00000259786.7	ENST00000658190.1	lncRNA	lncRNA	lncRNA	lncRNA	1	38	2	2.23182	3.54902	4.86622	0.068598	0.00354075	0.184298	0.0546236
chr14	37165380	37165480	5877941	0	-	0.41	(0.408,0.44]	chr14	558013	2900	INTRON	INTRON	SLC25A21	ENSG00000183032.12	ENST00000331299.6:ENST00000555449.5:ENST00000557611.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	32	2	2.58179	3.548915	4.51604	0.024638	0.0137419	0.131869	0.0949306
chr16	56444530	56444630	6491448	0	-	0.42	(0.408,0.44]	chr16	627768	44	INTRON	INTRON	NUDT21	ENSG00000167005.14	ENST00000300291.10:ENST00000566340.5:ENST00000568822.1	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	2.58179	3.548915	4.51604	0.024638	0.0137419	0.131869	0.0949306
chr17	51034395	51034493	6796145	0	-	0.418367	(0.408,0.44]	chr17	670990	23	INTRON	INTRON	SPAG9	ENSG00000008294.22	ENST00000262013.12:ENST00000510283.5:ENST00000505279.5:ENST00000357122.8:ENST00000514613.5:ENST00000505173.5:ENST00000576492.1:ENST00000510855.1:ENST00000511987.5:ENST00000502329.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	32	2	2.58179	3.548915	4.51604	0.024638	0.0137419	0.131869	0.0949306
chr20	58990448	58990540	7291333	0	+	0.413043	(0.408,0.44]	chr20	741897	6	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NELFCD	ENSG00000101158.15	ENST00000602795.6:ENST00000652272.2:ENST00000460601.5:ENST00000477741.5:ENST00000474543.5:ENST00000478389.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	32	2	2.58179	3.548915	4.51604	0.024638	0.0137419	0.131869	0.0949306
chr3	194620957	194621057	1891666	0	-	0.44	(0.408,0.44]	chr3	189319	28	INTRON	INTRON	TMEM44	ENSG00000145014.18	ENST00000392432.6:ENST00000347147.9:ENST00000381975.7:ENST00000473092.5:ENST00000452358.5:ENST00000419280.5:ENST00000494894.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	32	2	2.58179	3.548915	4.51604	0.024638	0.0137419	0.131869	0.0949306
chr5	119270506	119270606	2461615	0	+	0.41	(0.408,0.44]	chr5	235842	12	INTRON	INTRON	TNFAIP8	ENSG00000145779.8	ENST00000274456.6:ENST00000388882.5	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	2.58179	3.548915	4.51604	0.024638	0.0137419	0.131869	0.0949306
chr7	100151049	100151147	3363770	0	+	0.428571	(0.408,0.44]	chr7	314420	11	INTRON	INTRON	LAMTOR4	ENSG00000188186.11	ENST00000474141.5:ENST00000460732.5:ENST00000341942.10:ENST00000474831.5:ENST00000441173.1:ENST00000468582.5:ENST00000488241.5:ENST00000473459.5:ENST00000466498.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	32	2	2.58179	3.548915	4.51604	0.024638	0.0137419	0.131869	0.0949306
chr7	140846016	140846116	3662945	0	-	0.41	(0.408,0.44]	chr7	340099	99	INTRON	INTRON	BRAF	ENSG00000157764.14	ENST00000496384.7:ENST00000644969.2:ENST00000646891.1:ENST00000644905.1:ENST00000642228.1:ENST00000288602.11:ENST00000646730.1:ENST00000497784.2:ENST00000642272.1:ENST00000642808.1:ENST00000643790.1:ENST00000469930.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	32	2	2.58179	3.548915	4.51604	0.024638	0.0137419	0.131869	0.0949306
chr9	37167329	37167429	4118128	0	+	0.41	(0.408,0.44]	chr9	375384	72	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000322831.6:ENST00000461038.5:ENST00000488607.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	32	2	2.58179	3.548915	4.51604	0.024638	0.0137419	0.131869	0.0949306
chrX	48608573	48608672	7658770	0	+	0.414141	(0.408,0.44]	chrX	783852	37	UTR3	UTR3:EXON_MRNA	WDR13	ENSG00000101940.18	ENST00000376729.10	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	2.58179	3.548915	4.51604	0.024638	0.0137419	0.131869	0.0949306
chr12	51120870	51120970	5325351	0	-	0.38	(0.378,0.408]	chr12	507884	17	INTRON	INTRON	TFCP2	ENSG00000135457.11	ENST00000257915.10:ENST00000685804.1:ENST00000549867.5:ENST00000548115.5:ENST00000548108.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	48	2	2.11194	3.5489050000000004	4.98587	0.0292534	0.00152268	0.128055	0.0360297
chr16	16564694	16564794	6311509	0	+	0.4	(0.378,0.408]	chr16	604098	647	INTRON	INTRON	ENSG00000260126	ENSG00000260126.2	ENST00000567465.2	lncRNA	lncRNA	lncRNA	lncRNA	2	48	2	2.11194	3.5489050000000004	4.98587	0.0292534	0.00152268	0.128055	0.0360297
chr1	58668252	58668329	467499	0	-	0.324675	(0.32,0.35]	chr1	56422	4	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MYSM1	ENSG00000162601.11	ENST00000655340.1:ENST00000493821.6:ENST00000472487.6:ENST00000622766.1:ENST00000665648.1:ENST00000659812.1:ENST00000659108.1:ENST00000401044.7:ENST00000660611.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	48	2	1.81328	3.54889	5.2845	0.0615716	0.00240071	0.193423	0.0440612
chr7	151103409	151103509	3448521	0	+	0.34	(0.32,0.35]	chr7	322165	125	INTRON	INTRON	AGAP3	ENSG00000133612.19	ENST00000490097.5:ENST00000463381.5:ENST00000397238.7:ENST00000622464.4:ENST00000479901.5:ENST00000473312.5:ENST00000469901.5:ENST00000476375.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	48	2	1.81328	3.54889	5.2845	0.0615716	0.00240071	0.193423	0.0440612
chr4	159273910	159274010	2075221	0	+	0.53	(0.515,0.57]	chr4	205230	53	INTRON	INTRON	RAPGEF2	ENSG00000109756.10	ENST00000644474.1:ENST00000691494.1:ENST00000505478.5:ENST00000504604.5:ENST00000644902.1:ENST00000511336.5:ENST00000510510.5:ENST00000264431.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	39	2	2.26012	3.5488800000000005	4.83764	0.0160033	0.00279527	0.109464	0.0469265
chr5	66145882	66145982	2372503	0	+	0.27	[0,0.28]	chr5	228649	3	INTRON	INTRON	SREK1	ENSG00000153914.16	ENST00000521691.5:ENST00000612404.4:ENST00000523851.1:ENST00000334121.11:ENST00000520058.1:ENST00000520953.5:ENST00000522912.5:ENST00000524111.5:ENST00000380918.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	44	2	2.38757	3.54887	4.71017	0.0552962	0.0114708	0.165463	0.0956037
chr7	107155604	107155702	3378285	0	+	0.27551	[0,0.28]	chr7	316289	20	INTRON	INTRON	PRKAR2B	ENSG00000005249.13	ENST00000265717.5	protein_coding	protein_coding	protein_coding	protein_coding	1	44	2	2.38757	3.54887	4.71017	0.0552962	0.0114708	0.165463	0.0956037
chr5	177027731	177027831	2552981	0	+	0.43	(0.408,0.44]	chr5	243771	41	INTRON	INTRON	ZNF346	ENSG00000113761.12	ENST00000512315.5:ENST00000358149.8:ENST00000506693.5:ENST00000503425.5:ENST00000508155.5:ENST00000511834.5:ENST00000503039.1:ENST00000513587.5:ENST00000510933.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	47	2	2.16746	3.5488500000000003	4.93024	0.024436	0.00170369	0.12011	0.0381936
chr12	104516393	104516493	5211278	0	+	0.34	(0.32,0.35]	chr12	493315	585	INTRON	INTRON	CHST11	ENSG00000171310.11	ENST00000303694.6:ENST00000547956.1:ENST00000549260.5:ENST00000546689.1	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	2.37794	3.54882	4.7197	0.0498601	0.00568521	0.156383	0.0678837
chr12	116173001	116173101	5424499	0	-	0.35	(0.32,0.35]	chr12	518263	611	INTRON	INTRON	MED13L	ENSG00000123066.9	ENST00000281928.9:ENST00000650226.1:ENST00000548743.2:ENST00000647567.1:ENST00000551197.2	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	2.37794	3.54882	4.7197	0.0498601	0.00568521	0.156383	0.0678837
chr2	210018989	210019078	1000496	0	+	0.348315	(0.32,0.35]	chr2	107413	4	INTRON	INTRON	RPE	ENSG00000197713.15	ENST00000354506.10:ENST00000436630.6:ENST00000408981.6:ENST00000429921.5:ENST00000454822.5:ENST00000359429.11:ENST00000429907.5:ENST00000438204.6:ENST00000452025.5:ENST00000445268.5:ENST00000411934.6:ENST00000435437.2	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	2.37794	3.54882	4.7197	0.0498601	0.00568521	0.156383	0.0678837
chr20	37067132	37067221	7339276	0	-	0.337079	(0.32,0.35]	chr20	747911	1	SSB_ADJ	SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RBL1	ENSG00000080839.12	ENST00000373664.8:ENST00000344359.7:ENST00000525052.1	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	2.37794	3.54882	4.7197	0.0498601	0.00568521	0.156383	0.0678837
chr4	84894718	84894818	2190539	0	-	0.53	(0.515,0.57]	chr4	215292	149	INTRON	INTRON	WDFY3	ENSG00000163625.16	ENST00000295888.9:ENST00000426414.6:ENST00000509172.1:ENST00000502713.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	39	2	2.1885	3.5488099999999996	4.90912	0.0202537	0.0021669	0.121364	0.0417866
chr1	16323817	16323916	382333	0	-	0.464646	(0.44,0.476]	chr1	44888	80	INTRON	INTRON	FBXO42	ENSG00000037637.11	ENST00000375592.8	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	2.49112	3.548795	4.60647	0.0315968	0.0102339	0.144381	0.0850389
chr9	130633571	130633670	4213649	0	+	0.474747	(0.44,0.476]	chr9	386360	9	INTRON	INTRON	FUBP3	ENSG00000107164.16	ENST00000319725.10:ENST00000650723.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	32	2	2.49112	3.548795	4.60647	0.0315968	0.0102339	0.144381	0.0850389
chr20	49641877	49641967	7352902	0	-	0.333333	(0.32,0.35]	chr20	749822	9	INTRON	INTRON	B4GALT5	ENSG00000158470.5	ENST00000371711.4	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	2.64129	3.5487900000000003	4.45629	0.0246089	0.0222819	0.124303	0.12011
chr3	47169168	47169266	1418130	0	+	0.336735	(0.32,0.35]	chr3	148975	1	EXON_LNCRNA	EXON_LNCRNA	KIF9-AS1	ENSG00000227398.5	ENST00000670818.1:ENST00000689153.1:ENST00000429315.3	lncRNA	lncRNA	lncRNA	lncRNA	1	35	2	2.64129	3.5487900000000003	4.45629	0.0246089	0.0222819	0.124303	0.12011
chr1	17424850	17424945	384836	0	-	0.642105	(0.57,1]	chr1	45481	17	INTRON	INTRON	RCC2	ENSG00000179051.14	ENST00000375436.9:ENST00000375433.3	protein_coding	protein_coding	protein_coding	protein_coding	1	22	2	2.53383	3.54874	4.56365	0.02547	0.00129848	0.12011	0.0333764
chr12	123756423	123756521	5244549	0	+	0.571429	(0.57,1]	chr12	498651	2	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	ATP6V0A2	ENSG00000185344.15	ENST00000330342.8:ENST00000675344.1:ENST00000534943.5:ENST00000544833.1:ENST00000543687.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	22	2	2.53383	3.54874	4.56365	0.02547	0.00129848	0.12011	0.0333764
chr7	967212	967310	3460333	0	-	0.632653	(0.57,1]	chr7	323535	25	UTR3	UTR3:EXON_MRNA:INTRON	COX19	ENSG00000240230.6	ENST00000457254.5:ENST00000344111.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	22	2	2.53383	3.54874	4.56365	0.02547	0.00129848	0.12011	0.0333764
chr7	139280633	139280730	3437092	0	+	0.474227	(0.44,0.476]	chr7	320259	9	INTRON	INTRON	UBN2	ENSG00000157741.15	ENST00000473989.8	protein_coding	protein_coding	protein_coding	protein_coding	2	71	2	3.54632	3.5484999999999998	3.55068	9.9951e-4	7.06861e-4	0.0288906	0.0241881
chr1	93111820	93111918	162868	0	+	0.346939	(0.32,0.35]	chr1	17578	8	INTRON	INTRON	MTF2	ENSG00000143033.18	ENST00000540243.5:ENST00000545708.5:ENST00000474314.6:ENST00000370298.9:ENST00000473430.5:ENST00000494963.5:ENST00000471953.5:ENST00000370303.4:ENST00000467953.5:ENST00000497976.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	35	2	2.40308	3.5484400000000003	4.6938	0.0417732	0.0137794	0.161736	0.0949306
chr1	96743343	96743443	168157	0	+	0.33	(0.32,0.35]	chr1	18215	194	INTRON	INTRON	PTBP2	ENSG00000117569.19	ENST00000482253.5:ENST00000675735.1:ENST00000609116.5:ENST00000674951.1:ENST00000675080.1:ENST00000426398.3:ENST00000460706.5:ENST00000370197.5:ENST00000370198.5:ENST00000476419.5:ENST00000676292.1:ENST00000676096.1:ENST00000675365.1:ENST00000674579.1:ENST00000675401.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	35	2	2.40308	3.5484400000000003	4.6938	0.0417732	0.0137794	0.161736	0.0949306
chr15	95131011	95131111	6107953	0	+	0.34	(0.32,0.35]	chr15	581736	76	INTRON	INTRON	ENSG00000277654	ENSG00000277654.6	ENST00000616940.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	1	35	2	2.40308	3.5484400000000003	4.6938	0.0417732	0.0137794	0.161736	0.0949306
chr16	30752862	30752954	6339154	0	+	0.347826	(0.32,0.35]	chr16	607875	5	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	PHKG2	ENSG00000156873.16	ENST00000565924.5:ENST00000424889.7:ENST00000564838.5:ENST00000563588.6:ENST00000328273.11:ENST00000563913.5:ENST00000565897.5:ENST00000563607.1:ENST00000569684.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	35	2	2.40308	3.5484400000000003	4.6938	0.0417732	0.0137794	0.161736	0.0949306
chr11	644854	644954	4888963	0	-	0.58	(0.57,1]	chr11	457668	2	SS3_PROX	SS3_PROX:INTRON	DEAF1	ENSG00000177030.19	ENST00000382409.4:ENST00000527170.5:ENST00000685854.1:ENST00000527658.1:ENST00000683307.1:ENST00000528864.6:ENST00000525626.6:ENST00000682936.1:ENST00000690068.1:ENST00000692634.1:ENST00000687329.1:ENST00000686001.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	22	2	2.78409	3.54843	4.31277	0.0116033	0.00346264	0.0889104	0.0539802
chr3	15231610	15231710	1373128	0	+	0.58	(0.57,1]	chr3	144760	1	SS3_PROX	SS3_PROX:INTRON	CAPN7	ENSG00000131375.10	ENST00000253693.7:ENST00000415565.1	protein_coding	protein_coding	protein_coding	protein_coding	1	22	2	2.78409	3.54843	4.31277	0.0116033	0.00346264	0.0889104	0.0539802
chrX	121211730	121211830	7715307	0	+	0.47	(0.44,0.476]	chrX	789390	255	INTRON	INTRON	ENSG00000286163	ENSG00000286163.1	ENST00000651788.1	lncRNA	lncRNA	lncRNA	lncRNA	3	53	2	2.26452	3.54827	4.83202	0.00654074	0.00525002	0.0735539	0.0633615
chr12	46261529	46261629	5316452	0	-	0.37	(0.35,0.378]	chr12	505749	62	INTRON	INTRON	SLC38A1	ENSG00000111371.16	ENST00000398637.10:ENST00000439706.5:ENST00000549049.5:ENST00000546893.5:ENST00000552197.5:ENST00000549633.5:ENST00000551506.1:ENST00000550173.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	63	2	1.9392	3.548215	5.15723	0.0126486	0.00272706	0.0982897	0.0467523
chr1	37494507	37494607	423847	0	-	0.46	(0.44,0.476]	chr1	51219	4	SS3_PROX	SS3_PROX:INTRON	MEAF6	ENSG00000163875.16	ENST00000296214.10:ENST00000373075.6:ENST00000373074.5:ENST00000475828.5:ENST00000487788.5:ENST00000373073.8:ENST00000487792.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	34	2	3.08591	3.548145	4.01038	0.0433743	0.00481262	0.148082	0.0638089
chr1	213193761	213193861	312135	0	+	0.47	(0.44,0.476]	chr1	35957	169	INTRON	INTRON	RPS6KC1	ENSG00000136643.12	ENST00000615329.4:ENST00000543354.5:ENST00000614059.4:ENST00000543470.5:ENST00000366960.8:ENST00000366959.4:ENST00000490299.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	34	2	3.08591	3.548145	4.01038	0.0433743	0.00481262	0.148082	0.0638089
chr3	38352186	38352285	1399529	0	+	0.444444	(0.44,0.476]	chr3	146778	32	INTRON	INTRON	XYLB	ENSG00000093217.11	ENST00000427323.5:ENST00000207870.8:ENST00000650590.1:ENST00000424034.5:ENST00000649234.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	34	2	3.08591	3.548145	4.01038	0.0433743	0.00481262	0.148082	0.0638089
chr4	1832243	1832343	2095519	0	-	0.5	(0.476,0.515]	chr4	207305	1	SS5_PROX	SS5_PROX:INTRON	LETM1	ENSG00000168924.15	ENST00000302787.3:ENST00000511977.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	47	2	2.31726	3.54791	4.77856	0.015077	0.00305743	0.0994339	0.0509893
chr11	591867	591967	4719729	0	+	0.51	(0.476,0.515]	chr11	436181	4	SS5_PROX	SS5_PROX:INTRON	PHRF1	ENSG00000070047.13	ENST00000264555.10:ENST00000416188.3:ENST00000534320.5:ENST00000413872.6:ENST00000533464.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	263	2	3.3475799999999998	3.54784	3.7481	5.28947e-6	3.93244e-7	0.00170675	3.25096e-4
chr22	21499173	21499273	7560082	0	-	0.58	(0.57,1]	chr22	773318	67	INTRON	INTRON	PI4KAP2	ENSG00000183506.17	ENST00000450651.5:ENST00000467443.5:ENST00000479693.1:ENST00000476537.1:ENST00000491562.5	transcribed_unitary_pseudogene	retained_intron	transcribed_unitary_pseudogene	retained_intron:processed_transcript	2	40	2	3.40333	3.547505	3.69168	9.20604e-4	2.1608e-4	0.0278392	0.0134537
chr1	174243997	174244097	257957	0	+	0.36	(0.35,0.378]	chr1	30758	3	SS3_PROX	SS3_PROX:INTRON	RABGAP1L	ENSG00000152061.24	ENST00000357444.10:ENST00000251507.8:ENST00000681986.1:ENST00000635248.1:ENST00000457696.1:ENST00000529474.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	34	2	2.79643	3.54741	4.29839	0.0294717	0.013543	0.128055	0.101363
chr1	220043653	220043753	639165	0	-	0.37	(0.35,0.378]	chr1	75333	30	INTRON	INTRON	EPRS1	ENSG00000136628.18	ENST00000366923.8:ENST00000609181.5:ENST00000477030.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	34	2	2.79643	3.54741	4.29839	0.0294717	0.013543	0.128055	0.101363
chr16	24041441	24041541	6325820	0	+	0.37	(0.35,0.378]	chr16	605723	55	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000498739.1:ENST00000647422.1:ENST00000486868.1:ENST00000482000.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	34	2	2.79643	3.54741	4.29839	0.0294717	0.013543	0.128055	0.101363
chr21	46521149	46521248	7423131	0	+	0.373737	(0.35,0.378]	chr21	757010	92	INTRON	INTRON	DIP2A	ENSG00000160305.18	ENST00000417564.3:ENST00000651436.1:ENST00000400274.5:ENST00000457905.7:ENST00000466639.5:ENST00000435722.7:ENST00000473752.5:ENST00000494435.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	34	2	2.79643	3.54741	4.29839	0.0294717	0.013543	0.128055	0.101363
chr7	158949716	158949816	3457094	0	+	0.37	(0.35,0.378]	chr7	323276	35	INTRON	INTRON	DYNC2I1	ENSG00000126870.16	ENST00000454771.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	1	34	2	2.79643	3.54741	4.29839	0.0294717	0.013543	0.128055	0.101363
chr6	53311183	53311282	3107811	0	-	0.444444	(0.44,0.476]	chr6	291049	151	INTRON	INTRON	ELOVL5	ENSG00000012660.14	ENST00000370918.8:ENST00000542638.5:ENST00000304434.11:ENST00000485336.5:ENST00000465983.5:ENST00000486973.1:ENST00000370913.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	57	2	2.572	3.5473500000000002	4.5227	0.0128818	0.00173736	0.0926667	0.03851
chr8	140889051	140889150	4078947	0	-	0.252525	[0,0.28]	chr8	370535	91	INTRON	INTRON	PTK2	ENSG00000169398.20	ENST00000696786.1:ENST00000522684.5:ENST00000395218.3:ENST00000519654.5:ENST00000521059.5:ENST00000517887.5:ENST00000519993.5:ENST00000340930.7:ENST00000519419.5:ENST00000524357.5:ENST00000521791.5:ENST00000523067.5:ENST00000520828.5:ENST00000520475.5:ENST00000519881.5:ENST00000520892.5:ENST00000523803.5:ENST00000521907.5:ENST00000517453.5:ENST00000520045.5:ENST00000521395.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	102	2	3.0836	3.54716	4.01072	0.00940284	1.64007e-4	0.0817766	0.0110295
chr12	65180596	65180696	5157223	0	+	0.31	(0.28,0.32]	chr12	488236	88	INTRON	INTRON	LEMD3	ENSG00000174106.3	ENST00000308330.3:ENST00000541171.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	41	2	2.57195	3.54714	4.52233	0.0331711	0.0129279	0.133994	0.0990564
chr2	76060830	76060930	818768	0	+	0.29	(0.28,0.32]	chr2	91391	1880	INTRON	INTRON	ENSG00000287474	ENSG00000287474.1	ENST00000670606.1	lncRNA	lncRNA	lncRNA	lncRNA	1	41	2	2.57195	3.54714	4.52233	0.0331711	0.0129279	0.133994	0.0990564
chr7	155769127	155769225	3453164	0	+	0.316327	(0.28,0.32]	chr7	322745	21	INTRON	INTRON	RBM33	ENSG00000184863.11	ENST00000401878.8:ENST00000341148.7:ENST00000392755.2	protein_coding	protein_coding	protein_coding	protein_coding	1	41	2	2.57195	3.54714	4.52233	0.0331711	0.0129279	0.133994	0.0990564
chr1	215589974	215590073	314412	0	+	0.353535	(0.35,0.378]	chr1	36239	29	INTRON	INTRON	KCTD3	ENSG00000136636.13	ENST00000259154.9	protein_coding	protein_coding	protein_coding	protein_coding	2	45	2	2.10859	3.5471000000000004	4.98561	0.0272722	0.00474226	0.136494	0.0600445
chr14	30992373	30992472	5857533	0	-	0.424242	(0.408,0.44]	chr14	556508	280	INTRON	INTRON	STRN3	ENSG00000196792.12	ENST00000355683.9:ENST00000357479.10:ENST00000555358.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	134	2	3.21668	3.546995	3.87731	2.32969e-4	1.61304e-5	0.013966	0.00303604
chr17	81598876	81598972	6849214	0	-	0.34375	(0.32,0.35]	chr17	678181	12	INTRON	INTRON	NPLOC4	ENSG00000182446.14	ENST00000331134.11:ENST00000374747.9:ENST00000574897.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	47	2	2.01768	3.5469850000000003	5.07629	0.0361337	0.00468114	0.152563	0.0600108
chr11	32426663	32426762	4940010	0	-	0.515152	(0.476,0.515]	chr11	462731	87	INTRON	INTRON	WT1	ENSG00000184937.16	ENST00000379077.9:ENST00000452863.10:ENST00000379079.8:ENST00000530998.5:ENST00000332351.9:ENST00000640146.2:ENST00000448076.9:ENST00000639563.3:ENST00000527775.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	32	2	2.65268	3.54698	4.44128	0.0201975	0.0151924	0.121243	0.0994339
chr15	59661114	59661212	6194494	0	-	0.5	(0.476,0.515]	chr15	590172	21	UTR3	UTR3:EXON_MRNA:INTRON	ENSG00000227161:BNIP2	ENSG00000227161.1:ENSG00000140299.13	ENST00000441746.1:ENST00000267859.8:ENST00000607373.6	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	1	32	2	2.65268	3.54698	4.44128	0.0201975	0.0151924	0.121243	0.0994339
chr5	134712251	134712350	2490066	0	+	0.494949	(0.476,0.515]	chr5	237819	30	INTRON	INTRON	SEC24A	ENSG00000113615.13	ENST00000398844.7	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	2.65268	3.54698	4.44128	0.0201975	0.0151924	0.121243	0.0994339
chr11	73982520	73982620	4985941	0	-	0.46	(0.44,0.476]	chr11	470969	4	SS5_PROX	SS5_PROX:INTRON	UCP2	ENSG00000175567.11	ENST00000663595.2:ENST00000310473.9:ENST00000536983.5:ENST00000543714.5:ENST00000542615.5:ENST00000541027.5:ENST00000539330.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	94	2	3.28281	3.54691	3.81101	3.0729e-4	2.0352e-4	0.0161362	0.0124395
chr6	161037548	161037648	3024951	0	+	0.51	(0.476,0.515]	chr6	282315	27	INTRON	INTRON	MAP3K4	ENSG00000085511.20	ENST00000366919.6:ENST00000392142.9:ENST00000542952.5:ENST00000366920.6:ENST00000348824.11:ENST00000544041.5:ENST00000490904.6:ENST00000446500.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	35	2	2.7646	3.546875	4.32915	0.0162075	0.0124637	0.101453	0.0973643
chr7	66531073	66531172	3539493	0	-	0.484848	(0.476,0.515]	chr7	330225	51	EXON_LNCRNA	EXON_LNCRNA	RABGEF1P1	ENSG00000229180.8	ENST00000449307.3:ENST00000639011.1:ENST00000692299.1:ENST00000686269.1:ENST00000649635.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	1	35	2	2.7646	3.546875	4.32915	0.0162075	0.0124637	0.101453	0.0973643
chr19	15313340	15313440	7147214	0	-	0.48	(0.476,0.515]	chr19	721965	330	INTRON	INTRON	BRD4	ENSG00000141867.19	ENST00000679869.1:ENST00000360016.9:ENST00000594841.5:ENST00000597315.5:ENST00000601941.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	59	2	1.78315	3.546865	5.31058	0.0215899	9.15544e-4	0.123836	0.0278396
chr2	101846106	101846206	837555	0	+	0.38	(0.378,0.408]	chr2	93964	14	INTRON	INTRON	MAP4K4	ENSG00000071054.17	ENST00000324219.9:ENST00000350878.9:ENST00000425019.6:ENST00000625522.3:ENST00000413150.6:ENST00000634702.1:ENST00000456652.5:ENST00000347699.8:ENST00000417294.5:ENST00000627726.3:ENST00000476609.1:ENST00000421882.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	44	2	2.35527	3.54683	4.73839	0.0121511	0.00837252	0.0963966	0.0774402
chr16	70238125	70238224	6509940	0	-	0.494949	(0.476,0.515]	chr16	630471	23	INTRON	INTRON	SMG1P7	ENSG00000261556.10	ENST00000565246.7:ENST00000568855.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	1	32	2	2.47949	3.546755	4.61402	0.0326974	0.00947755	0.145164	0.0817766
chr4	1916470	1916570	1911030	0	+	0.51	(0.476,0.515]	chr4	191755	2	SS3_PROX	SS3_PROX:INTRON	NSD2	ENSG00000109685.19	ENST00000508803.6:ENST00000508355.5:ENST00000514045.5:ENST00000398261.6:ENST00000382891.9:ENST00000353275.9:ENST00000382892.6:ENST00000382895.7:ENST00000312087.10:ENST00000420906.6:ENST00000503128.5:ENST00000509115.5:ENST00000677559.1:ENST00000512700.2:ENST00000678714.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	32	2	2.47949	3.546755	4.61402	0.0326974	0.00947755	0.145164	0.0817766
chr4	55471899	55471998	2149149	0	-	0.494949	(0.476,0.515]	chr4	211500	7	INTRON	INTRON	CLOCK	ENSG00000134852.15	ENST00000513440.6:ENST00000309964.8:ENST00000381322.5:ENST00000506747.5:ENST00000435527.6:ENST00000508049.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	32	2	2.47949	3.546755	4.61402	0.0326974	0.00947755	0.145164	0.0817766
chr7	8064815	8064914	3279958	0	+	0.515152	(0.476,0.515]	chr7	304783	42	INTRON	INTRON	GLCCI1	ENSG00000106415.13	ENST00000223145.10:ENST00000430798.1:ENST00000414914.5:ENST00000474269.5:ENST00000489405.5:ENST00000438949.1:ENST00000496617.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	32	2	2.47949	3.546755	4.61402	0.0326974	0.00947755	0.145164	0.0817766
chr1	55113630	55113729	464835	0	-	0.444444	(0.44,0.476]	chr1	56085	30	INTRON	INTRON	USP24	ENSG00000162402.14	ENST00000294383.7	protein_coding	protein_coding	protein_coding	protein_coding	2	43	2	2.33272	3.5467	4.76068	0.0129984	0.00653414	0.0991656	0.0699952
chr17	693082	693181	6698352	0	-	0.464646	(0.44,0.476]	chr17	655368	67	INTRON	INTRON	VPS53	ENSG00000141252.21	ENST00000437048.7:ENST00000680465.1:ENST00000681661.1:ENST00000680872.1:ENST00000681317.1:ENST00000680641.1:ENST00000681946.1:ENST00000681917.1:ENST00000573028.5:ENST00000571805.6:ENST00000681478.1:ENST00000680128.1:ENST00000291074.10:ENST00000389040.9:ENST00000401468.7:ENST00000680704.1:ENST00000680069.1:ENST00000681902.1:ENST00000679361.1:ENST00000681154.1:ENST00000680274.1:ENST00000681229.1:ENST00000681035.1:ENST00000681133.1:ENST00000576019.6:ENST00000679961.1:ENST00000575207.6:ENST00000680970.1:ENST00000680241.1:ENST00000681423.1:ENST00000572259.2:ENST00000575100.2:ENST00000681295.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	43	2	2.33272	3.5467	4.76068	0.0129984	0.00653414	0.0991656	0.0699952
chr22	21798412	21798511	7560691	0	-	0.515152	(0.476,0.515]	chr22	773370	93	INTRON	INTRON	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	4	113	2	3.17031	3.546685	3.92306	1.72405e-4	7.50511e-5	0.0120625	0.007252
chr16	87744720	87744819	6538459	0	-	0.373737	(0.35,0.378]	chr16	633538	18	INTRON	INTRON	KLHDC4	ENSG00000104731.14	ENST00000567298.5:ENST00000270583.10:ENST00000347925.9:ENST00000353170.9:ENST00000316853.10:ENST00000562155.5:ENST00000622456.4:ENST00000562261.1:ENST00000566661.5:ENST00000564484.5:ENST00000565328.5:ENST00000569747.5:ENST00000564396.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	34	2	2.30249	3.54664	4.79079	0.0519726	0.00846427	0.176696	0.0776969
chr2	87730591	87730691	828703	0	+	0.37	(0.35,0.378]	chr2	92557	40	INTRON	INTRON	ENSG00000284879	ENSG00000284879.1	ENST00000643276.1:ENST00000646855.1	lncRNA	lncRNA	lncRNA	lncRNA	1	34	2	2.30249	3.54664	4.79079	0.0519726	0.00846427	0.176696	0.0776969
chr5	60969626	60969726	2359464	0	+	0.36	(0.35,0.378]	chr5	227644	238	INTRON	INTRON	NDUFAF2	ENSG00000164182.12	ENST00000678452.1:ENST00000677756.1:ENST00000296597.10:ENST00000511107.1:ENST00000677932.1:ENST00000502658.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	34	2	2.30249	3.54664	4.79079	0.0519726	0.00846427	0.176696	0.0776969
chr3	45602849	45602949	1416186	0	+	0.6	(0.57,1]	chr3	148594	62	INTRON	INTRON	LIMD1	ENSG00000144791.10	ENST00000465039.5:ENST00000440097.5:ENST00000273317.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	41	2	3.22856	3.5465799999999996	3.8646	0.00205928	8.0672e-5	0.0420839	0.00804467
chr1	153967630	153967712	558079	0	-	0.426829	(0.408,0.44]	chr1	66149	4	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	SLC39A1	ENSG00000143570.19	ENST00000617697.4:ENST00000310483.10	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	2.66579	3.5464599999999997	4.42713	0.019342	0.0173083	0.119831	0.104099
chr10	7179454	7179554	4550602	0	-	0.42	(0.408,0.44]	chr10	420158	29	INTRON	INTRON	SFMBT2	ENSG00000198879.13	ENST00000397167.6:ENST00000361972.8:ENST00000684547.1:ENST00000683762.1:ENST00000673876.1:ENST00000682896.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	32	2	2.66579	3.5464599999999997	4.42713	0.019342	0.0173083	0.119831	0.104099
chr10	68333032	68333131	4440768	0	+	0.424242	(0.408,0.44]	chr10	409480	4	INTRON	INTRON	HNRNPH3	ENSG00000096746.18	ENST00000469172.5:ENST00000461310.5:ENST00000265866.12:ENST00000480987.5:ENST00000486854.5:ENST00000467249.1:ENST00000354695.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	32	2	2.66579	3.5464599999999997	4.42713	0.019342	0.0173083	0.119831	0.104099
chr10	71823387	71823487	4642552	0	-	0.43	(0.408,0.44]	chr10	427137	1	SS5_PROX	SS5_PROX:INTRON	PSAP	ENSG00000197746.15	ENST00000394936.8:ENST00000633965.1	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	2.66579	3.5464599999999997	4.42713	0.019342	0.0173083	0.119831	0.104099
chr1	13757377	13757477	31731	0	+	0.4	(0.378,0.408]	chr1	3857	75	INTRON	INTRON	PRDM2	ENSG00000116731.23	ENST00000311066.10:ENST00000376048.9:ENST00000235372.11:ENST00000491134.5:ENST00000502727.5:ENST00000502724.5:ENST00000413440.5:ENST00000343137.8:ENST00000491815.1:ENST00000503842.5:ENST00000505823.5:ENST00000407521.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	44	2	1.97143	3.5463549999999997	5.12128	0.0398704	0.00251746	0.161534	0.0446195
chr20	63214985	63215076	7362770	0	-	0.395604	(0.378,0.408]	chr20	751236	7	INTRON	INTRON	YTHDF1	ENSG00000149658.18	ENST00000370339.8:ENST00000370334.4	protein_coding	protein_coding	protein_coding	protein_coding	4	61	2	1.9714	3.54634	5.12128	0.0109363	0.00251746	0.0924799	0.0446195
chr13	32775249	32775348	5467241	0	+	0.292929	(0.28,0.32]	chr13	523912	3	UTR3	UTR3:EXON_MRNA	PDS5B	ENSG00000083642.19	ENST00000315596.15:ENST00000450460.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	40	2	2.2609	3.5462749999999996	4.83165	0.0671429	0.00527257	0.183051	0.0656295
chr14	101870546	101870646	5819601	0	+	0.3	(0.28,0.32]	chr14	551879	133	INTRON	INTRON	PPP2R5C	ENSG00000078304.20	ENST00000694906.1:ENST00000422945.6:ENST00000328724.9:ENST00000350249.7:ENST00000557621.5:ENST00000556307.5:ENST00000553730.5:ENST00000334743.9:ENST00000445439.7:ENST00000557095.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	40	2	2.2609	3.5462749999999996	4.83165	0.0671429	0.00527257	0.183051	0.0656295
chr6	157098886	157098986	3010390	0	+	0.3	(0.28,0.32]	chr6	281161	136	INTRON	INTRON	ARID1B	ENSG00000049618.24	ENST00000346085.10:ENST00000636930.2:ENST00000647938.1:ENST00000350026.10:ENST00000674190.1:ENST00000414678.7:ENST00000319584.11:ENST00000452544.2:ENST00000635849.1:ENST00000637003.1:ENST00000637904.1:ENST00000493658.2:ENST00000637810.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	40	2	2.2609	3.5462749999999996	4.83165	0.0671429	0.00527257	0.183051	0.0656295
chr10	21535890	21535987	4404422	0	+	0.381443	(0.378,0.408]	chr10	406413	7	INTRON	INTRON	MLLT10	ENSG00000078403.17	ENST00000651097.1:ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000377100.8:ENST00000377091.7:ENST00000650772.1:ENST00000651298.1:ENST00000471315.5:ENST00000652497.1:ENST00000495130.5:ENST00000377059.7:ENST00000621220.4:ENST00000476557.5:ENST00000462999.5:ENST00000430455.2:ENST00000479634.1:ENST00000480415.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	100	2	3.47322	3.546255	3.61929	0.00147803	3.16433e-5	0.0348908	0.00449886
chr13	98453509	98453609	5642542	0	-	0.41	(0.408,0.44]	chr13	537435	3	SS3_PROX	SS3_PROX:INTRON	STK24	ENSG00000102572.15	ENST00000539966.6:ENST00000397517.6:ENST00000376554.8:ENST00000376547.7	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	2.49258	3.5461849999999995	4.59979	0.0314608	0.0109537	0.144381	0.0873034
chr17	4069792	4069890	6709564	0	-	0.438776	(0.408,0.44]	chr17	657375	22	INTRON	INTRON	ZZEF1	ENSG00000074755.15	ENST00000381638.7:ENST00000572426.5:ENST00000570365.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	32	2	2.49258	3.5461849999999995	4.59979	0.0314608	0.0109537	0.144381	0.0873034
chr3	42044111	42044211	1403963	0	+	0.43	(0.408,0.44]	chr3	147497	296	INTRON	INTRON	TRAK1	ENSG00000182606.17	ENST00000487159.5:ENST00000672026.1:ENST00000673621.2	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	2.49258	3.5461849999999995	4.59979	0.0314608	0.0109537	0.144381	0.0873034
chr5	29026135	29026235	2332015	0	+	0.44	(0.408,0.44]	chr5	225145	229	INTRON	INTRON	LINC02109	ENSG00000259786.7	ENST00000658190.1	lncRNA	lncRNA	lncRNA	lncRNA	1	32	2	2.49258	3.5461849999999995	4.59979	0.0314608	0.0109537	0.144381	0.0873034
chr7	72922722	72922821	3330227	0	+	0.434343	(0.408,0.44]	chr7	309573	26	INTRON	INTRON	POM121	ENSG00000196313.13	ENST00000627934.3:ENST00000395270.5	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	2.49258	3.5461849999999995	4.59979	0.0314608	0.0109537	0.144381	0.0873034
chr7	106280862	106280961	3608570	0	-	0.535354	(0.515,0.57]	chr7	336542	33	INTRON	INTRON	NAMPT	ENSG00000105835.13	ENST00000681491.1:ENST00000222553.8:ENST00000681494.1:ENST00000680708.1:ENST00000681653.1:ENST00000681391.1:ENST00000680991.1:ENST00000680077.1:ENST00000681456.1:ENST00000680675.1:ENST00000681550.1:ENST00000680864.1:ENST00000680584.1:ENST00000680669.1:ENST00000424768.2:ENST00000681255.1:ENST00000679873.1:ENST00000679643.1:ENST00000681878.1:ENST00000489732.2:ENST00000679951.1:ENST00000680823.1:ENST00000680468.1:ENST00000681936.1:ENST00000680152.1:ENST00000681887.1:ENST00000680129.1:ENST00000680786.1:ENST00000681223.1:ENST00000679717.1:ENST00000354289.9:ENST00000491027.6:ENST00000393618.6:ENST00000489358.5:ENST00000441045.6:ENST00000417537.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	111	2	2.82873	3.546145	4.26356	1.44832e-4	1.84244e-5	0.0104652	0.00349761
chr17	35605007	35605105	6599715	0	+	0.459184	(0.44,0.476]	chr17	642245	36	INTRON	INTRON	AP2B1	ENSG00000006125.18	ENST00000589774.5:ENST00000616784.4:ENST00000621914.4:ENST00000620039.4:ENST00000616681.4:ENST00000621668.4:ENST00000610402.5:ENST00000612035.4:ENST00000591610.5:ENST00000590538.5:ENST00000614600.4:ENST00000590432.5:ENST00000612116.5:ENST00000618940.4:ENST00000592167.5:ENST00000593014.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	84	2	1.55725	3.54582	5.53439	0.0155922	4.05863e-4	0.109452	0.0185763
chr1	32383429	32383529	415080	0	-	0.3	(0.28,0.32]	chr1	50075	2	SS5_PROX	SS5_PROX:INTRON	BSDC1	ENSG00000160058.19	ENST00000455895.7:ENST00000444377.5:ENST00000341071.11:ENST00000526031.5:ENST00000419121.6:ENST00000446293.6:ENST00000373520.8:ENST00000527513.5:ENST00000527163.5:ENST00000530485.1:ENST00000474414.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	50	2	1.83771	3.545795	5.25388	0.0591725	0.00385849	0.189982	0.0542786
chr13	69306139	69306238	5508880	0	+	0.282828	(0.28,0.32]	chr13	527078	141	INTRON	INTRON	LINC00383	ENSG00000235221.3	ENST00000657223.1:ENST00000648574.1	lncRNA	lncRNA	lncRNA	lncRNA	2	50	2	1.83771	3.545795	5.25388	0.0591725	0.00385849	0.189982	0.0542786
chr3	5192835	5192933	1354232	0	+	0.357143	(0.35,0.378]	chr3	142413	34	INTRON	INTRON	EDEM1	ENSG00000134109.11	ENST00000434243.5:ENST00000256497.9:ENST00000465369.5:ENST00000465187.1:ENST00000445686.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	46	2	2.44701	3.54579	4.64457	0.012652	0.00900997	0.0926667	0.0851009
chr17	47622889	47622986	6622546	0	+	0.42268	(0.408,0.44]	chr17	645982	11	UTR3	UTR3:EXON_MRNA:INTRON	NPEPPS	ENSG00000141279.17	ENST00000677710.1:ENST00000530173.6:ENST00000677226.1:ENST00000322157.9:ENST00000678461.1:ENST00000677120.1:ENST00000678909.1:ENST00000678496.1:ENST00000678262.1:ENST00000677370.1:ENST00000677664.1:ENST00000676492.1:ENST00000530514.6:ENST00000678902.1:ENST00000528565.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	53	2	2.26617	3.545735	4.8253	0.00649402	0.0056738	0.0734343	0.0653997
chr6	135011311	135011410	3225031	0	-	0.434343	(0.408,0.44]	chr6	299837	81	INTRON	INTRON	HBS1L	ENSG00000112339.15	ENST00000367837.10:ENST00000527578.5:ENST00000415177.6:ENST00000367826.6:ENST00000533274.5:ENST00000526100.5:ENST00000529641.5:ENST00000527507.1:ENST00000314674.7:ENST00000524715.5:ENST00000529882.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	53	2	2.26617	3.545735	4.8253	0.00649402	0.0056738	0.0734343	0.0653997
chr1	245759646	245759746	673216	0	-	0.39	(0.378,0.408]	chr1	79653	96	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000366517.5:ENST00000366516.5:ENST00000482592.5:ENST00000490107.6:ENST00000470510.5:ENST00000483072.5:ENST00000490322.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	36	2	2.66785	3.5456700000000003	4.42349	0.0224639	0.00992961	0.11692	0.0877296
chr20	21314726	21314825	7248251	0	+	0.393939	(0.378,0.408]	chr20	735885	109	INTRON	INTRON	XRN2	ENSG00000088930.8	ENST00000377191.5	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	2.66785	3.5456700000000003	4.42349	0.0224639	0.00992961	0.11692	0.0877296
chr15	85093967	85094066	6090063	0	+	0.454545	(0.44,0.476]	chr15	579554	24	INTRON	INTRON	PDE8A	ENSG00000073417.15	ENST00000310298.8:ENST00000557957.5:ENST00000394553.6:ENST00000339708.9:ENST00000478717.5:ENST00000485596.5:ENST00000559742.5:ENST00000559086.5:ENST00000560789.5:ENST00000557819.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	143	2	2.63341	3.5456149999999997	4.45782	2.47449e-4	1.04976e-5	0.013927	0.00253642
chr2	11226853	11226953	1067491	0	-	0.42	(0.408,0.44]	chr2	114056	2	SS5_PROX	SS5_PROX:INTRON	ROCK2	ENSG00000134318.15	ENST00000315872.11:ENST00000401753.5:ENST00000261535.7:ENST00000431087.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	34	2	3.08738	3.5456149999999997	4.00385	0.0454568	0.00478231	0.149888	0.0636201
chr2	171950481	171950581	918641	0	+	0.43	(0.408,0.44]	chr2	101189	33	INTRON	INTRON	HAT1	ENSG00000128708.13	ENST00000412731.5:ENST00000264108.5:ENST00000457761.6:ENST00000494601.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	34	2	3.08738	3.5456149999999997	4.00385	0.0454568	0.00478231	0.149888	0.0636201
chr8	39023725	39023825	3738560	0	+	0.41	(0.408,0.44]	chr8	347502	4	SS5_PROX	SS5_PROX:INTRON	ADAM9	ENSG00000168615.13	ENST00000678474.1:ENST00000676765.1:ENST00000676936.1:ENST00000677908.1:ENST00000677004.1:ENST00000677165.1:ENST00000481058.2:ENST00000676643.1:ENST00000676669.1:ENST00000679268.1:ENST00000677582.1:ENST00000676617.1:ENST00000677137.1:ENST00000678540.1:ENST00000677359.1:ENST00000678730.1:ENST00000487273.7:ENST00000678253.1:ENST00000676489.1:ENST00000379917.7:ENST00000468065.5:ENST00000481873.7:ENST00000676919.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	34	2	3.08738	3.5456149999999997	4.00385	0.0454568	0.00478231	0.149888	0.0636201
chr6	135202313	135202413	2962380	0	+	0.3	(0.28,0.32]	chr6	278649	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	MYB	ENSG00000118513.20	ENST00000341911.10:ENST00000442647.7:ENST00000316528.12:ENST00000616088.4:ENST00000339290.9:ENST00000367812.6:ENST00000463282.6:ENST00000525477.5:ENST00000533837.5:ENST00000367814.8:ENST00000527615.5:ENST00000525369.5:ENST00000438901.6:ENST00000525514.5:ENST00000526320.5:ENST00000526889.5:ENST00000529586.5:ENST00000531519.5:ENST00000533808.5:ENST00000528343.5:ENST00000524588.5:ENST00000525002.5:ENST00000525940.5:ENST00000526187.5:ENST00000526565.5:ENST00000528015.5:ENST00000528140.5:ENST00000528345.5:ENST00000528774.5:ENST00000529262.5:ENST00000531634.5:ENST00000531737.5:ENST00000533384.5:ENST00000533624.5:ENST00000534044.5:ENST00000534121.5:ENST00000531845.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	57	2	2.25939	3.54552	4.83165	0.021772	0.00527257	0.11491	0.0656295
chr5	34184645	34184743	2599931	0	-	0.408163	(0.378,0.408]	chr5	247053	14	INTRON	INTRON	GUSBP18	ENSG00000215158.9	ENST00000514048.5:ENST00000507274.1:ENST00000508395.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	5	135	2	3.05386	3.54542	4.03698	1.18327e-4	4.83737e-5	0.00985867	0.00567485
chr16	87866110	87866209	6539064	0	-	0.535354	(0.515,0.57]	chr16	633647	26	INTRON	INTRON	SLC7A5	ENSG00000103257.9	ENST00000261622.5	protein_coding	protein_coding	protein_coding	protein_coding	2	39	2	2.32836	3.5454	4.76244	0.0126662	0.00362147	0.0982897	0.0533855
chr2	158468903	158469003	897259	0	+	0.47	(0.44,0.476]	chr2	99341	102	INTRON	INTRON	PKP4	ENSG00000144283.23	ENST00000389759.8:ENST00000426248.7:ENST00000389757.7:ENST00000457109.5:ENST00000452162.5:ENST00000411900.5:ENST00000421462.5:ENST00000462335.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	144	2	2.86266	3.54538	4.2281	6.28069e-5	3.76811e-5	0.00658818	0.00523787
chr22	23221634	23221733	7483618	0	+	0.484848	(0.476,0.515]	chr22	763541	219	INTRON	INTRON	BCR	ENSG00000186716.21	ENST00000479188.5:ENST00000359540.7:ENST00000305877.13:ENST00000463770.5:ENST00000487679.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	57	2	2.09697	3.545195	4.99342	0.0136924	0.00139274	0.0949306	0.0341261
chr13	26263668	26263768	5457938	0	+	0.55	(0.515,0.57]	chr13	523009	85	INTRON	INTRON	CDK8	ENSG00000132964.12	ENST00000536792.5:ENST00000381527.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	39	2	2.11313	3.545175	4.97722	0.0256725	0.00168681	0.133676	0.0370386
chr3	10092640	10092736	1362891	0	+	0.395833	(0.378,0.408]	chr3	143624	4	SS5_PROX	SS5_PROX:INTRON	FANCD2	ENSG00000144554.13	ENST00000287647.7:ENST00000676013.1:ENST00000675286.1:ENST00000419585.5:ENST00000681997.1:ENST00000683263.1:ENST00000421731.5:ENST00000683933.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	67	2	1.75204	3.545165	5.33829	0.0268575	3.59275e-4	0.123442	0.0169207
chr8	94910114	94910214	3800887	0	+	0.41	(0.408,0.44]	chr8	352486	138	INTRON	INTRON	NDUFAF6	ENSG00000156170.13	ENST00000523378.5:ENST00000396113.5:ENST00000519136.5	protein_coding	protein_coding	protein_coding	protein_coding	2	71	2	3.41144	3.5451499999999996	3.67886	0.00178336	3.86173e-4	0.0379201	0.017761
chr18	9803177	9803277	6872731	0	+	0.41	(0.408,0.44]	chr18	680815	53	INTRON	INTRON	RAB31	ENSG00000168461.13	ENST00000578734.5:ENST00000578921.6:ENST00000581109.1:ENST00000435762.2:ENST00000578737.5:ENST00000583921.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	35	2	2.6542	3.545	4.4358	0.0227514	0.00893097	0.117618	0.0849778
chr7	75067292	75067390	3557184	0	-	0.418367	(0.408,0.44]	chr7	331254	1	INTRON	INTRON	RCC1L	ENSG00000274523.5	ENST00000614461.4:ENST00000610322.5:ENST00000616051.1:ENST00000618035.4:ENST00000615250.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	35	2	2.6542	3.545	4.4358	0.0227514	0.00893097	0.117618	0.0849778
chr7	157362760	157362860	3455560	0	+	0.3	(0.28,0.32]	chr7	323060	2	SS3_PROX	SS3_PROX:INTRON	DNAJB6	ENSG00000105993.15	ENST00000441561.5:ENST00000429029.6:ENST00000262177.9:ENST00000486083.6:ENST00000417758.5:ENST00000459889.5:ENST00000443280.5:ENST00000488001.5:ENST00000441291.5:ENST00000437030.5:ENST00000412557.5:ENST00000453383.5:ENST00000439402.1:ENST00000634080.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	63	2	2.28714	3.544845	4.80255	0.0137406	0.00696126	0.0949306	0.0754576
chr8	26314906	26315006	3716330	0	+	0.32	(0.28,0.32]	chr8	345372	99	INTRON	INTRON	PPP2R2A	ENSG00000221914.11	ENST00000380737.8:ENST00000520329.5:ENST00000518254.5:ENST00000524169.5:ENST00000518397.5:ENST00000522535.5:ENST00000665949.1:ENST00000522150.5:ENST00000523473.5:ENST00000521095.5:ENST00000660435.1:ENST00000523925.5:ENST00000524099.5:ENST00000315985.7:ENST00000519636.5:ENST00000522482.5:ENST00000521557.5:ENST00000519439.5:ENST00000521484.5:ENST00000523964.5:ENST00000667651.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	200	2	2.70781	3.544815	4.38182	0.00185874	4.94659e-7	0.0389941	3.78502e-4
chr2	58135399	58135499	784861	0	+	0.3	(0.28,0.32]	chr2	88230	2	SS5_PROX	SS5_PROX:INTRON	VRK2	ENSG00000028116.18	ENST00000648897.1:ENST00000417641.6:ENST00000435505.6:ENST00000412104.6:ENST00000432057.2:ENST00000440705.6:ENST00000340157.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	40	2	2.18975	3.544685	4.89962	0.0776042	0.00425206	0.196285	0.0595557
chr2	97498329	97498429	1183295	0	-	0.32	(0.28,0.32]	chr2	126861	51	INTRON	INTRON	ANKRD36B	ENSG00000196912.13	ENST00000359901.9:ENST00000488634.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	40	2	2.18975	3.544685	4.89962	0.0776042	0.00425206	0.196285	0.0595557
chr12	107702234	107702334	5218926	0	+	0.36	(0.35,0.378]	chr12	494023	24	INTRON	INTRON	PWP1	ENSG00000136045.12	ENST00000412830.8:ENST00000541166.1	protein_coding	protein_coding	protein_coding	protein_coding	2	45	2	2.23043	3.544565	4.8587	0.0187487	0.00695662	0.117523	0.0718189
chr10	5891714	5891813	4385192	0	+	0.494949	(0.476,0.515]	chr10	404622	2	INTRON	INTRON	FBH1	ENSG00000134452.20	ENST00000397269.7:ENST00000362091.9:ENST00000470089.5:ENST00000462507.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	46	2	2.16377	3.54453	4.92529	0.0243026	0.00180221	0.12011	0.0392772
chr10	18638277	18638377	4570582	0	-	0.49	(0.476,0.515]	chr10	421519	216	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7:ENST00000606425.2	protein_coding	protein_coding	protein_coding	protein_coding	2	46	2	2.16377	3.54453	4.92529	0.0243026	0.00180221	0.12011	0.0392772
chr19	29961850	29961949	7047750	0	+	0.515152	(0.476,0.515]	chr19	702663	34	INTRON	INTRON	URI1	ENSG00000105176.18	ENST00000360605.8:ENST00000570564.5:ENST00000574233.5:ENST00000392271.6:ENST00000574110.5:ENST00000574666.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	46	2	2.16377	3.54453	4.92529	0.0243026	0.00180221	0.12011	0.0392772
chr7	105566416	105566510	3604881	0	-	0.489362	(0.476,0.515]	chr7	336287	2	UTR3	UTR3:EXON_MRNA:INTRON	EFCAB10	ENSG00000185055.11	ENST00000469099.5:ENST00000480514.6:ENST00000485614.5:ENST00000486180.5	protein_coding	protein_coding	protein_coding	protein_coding	2	46	2	2.16377	3.54453	4.92529	0.0243026	0.00180221	0.12011	0.0392772
chr1	86938390	86938490	153830	0	+	0.3	(0.28,0.32]	chr1	16952	222	INTRON	INTRON	HS2ST1	ENSG00000153936.18	ENST00000370550.10:ENST00000370551.8:ENST00000687893.1:ENST00000693745.1:ENST00000689904.1:ENST00000690674.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	40	2	2.32871	3.54451	4.76031	0.0581621	0.00656106	0.167723	0.0735539
chr18	55589479	55589571	6978717	0	-	0.282609	(0.28,0.32]	chr18	690470	3	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	TCF4	ENSG00000196628.20	ENST00000636400.2:ENST00000636751.2:ENST00000629387.2:ENST00000537578.5:ENST00000568740.5:ENST00000565018.6:ENST00000398339.5:ENST00000564403.6:ENST00000568169.5:ENST00000564343.5:ENST00000562543.5:ENST00000569357.4:ENST00000674598.1:ENST00000627320.2:ENST00000630224.2:ENST00000565124.4:ENST00000637941.1:ENST00000628391.1:ENST00000565393.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	40	2	2.32871	3.54451	4.76031	0.0581621	0.00656106	0.167723	0.0735539
chr2	99452400	99452500	1189502	0	-	0.31	(0.28,0.32]	chr2	127708	5	INTRON	INTRON	REV1	ENSG00000135945.10	ENST00000393445.7:ENST00000258428.8:ENST00000413697.5:ENST00000473819.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	40	2	2.32871	3.54451	4.76031	0.0581621	0.00656106	0.167723	0.0735539
chr7	107314741	107314841	3610527	0	-	0.31	(0.28,0.32]	chr7	336666	160	INTRON	INTRON	COG5	ENSG00000164597.15	ENST00000297135.9:ENST00000347053.8:ENST00000393603.7	protein_coding	protein_coding	protein_coding	protein_coding	1	40	2	2.32871	3.54451	4.76031	0.0581621	0.00656106	0.167723	0.0735539
chr5	140405467	140405567	2502862	0	+	0.31	(0.28,0.32]	chr5	239166	28	INTRON	INTRON	ANKHD1	ENSG00000131503.21	ENST00000297183.10:ENST00000616482.4:ENST00000360839.7:ENST00000421134.5:ENST00000394723.7:ENST00000511151.5:ENST00000394722.7	protein_coding	protein_coding	protein_coding	protein_coding	3	60	2	1.98806	3.544375	5.10069	0.0199553	0.00610574	0.120668	0.0676501
chr7	152262608	152262701	3679544	0	-	0.311828	(0.28,0.32]	chr7	341598	2	SS5_PROX	SS5_PROX:INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682916.1:ENST00000682280.1:ENST00000680039.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	60	2	1.98806	3.544375	5.10069	0.0199553	0.00610574	0.120668	0.0676501
chr17	29161491	29161591	6747219	0	-	0.46	(0.44,0.476]	chr17	663199	212	INTRON	INTRON	MYO18A	ENSG00000196535.19	ENST00000527372.7:ENST00000531253.5:ENST00000533112.5:ENST00000585573.6:ENST00000590565.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	48	2	2.38519	3.54437	4.70355	0.012193	0.00383786	0.0910127	0.0562562
chr16	70268170	70268270	6510271	0	-	0.45	(0.44,0.476]	chr16	630561	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	AARS1	ENSG00000090861.17	ENST00000674963.1:ENST00000675643.1:ENST00000675917.1:ENST00000674691.1:ENST00000261772.13:ENST00000675569.1:ENST00000676209.1:ENST00000676211.1:ENST00000676040.1:ENST00000675953.1:ENST00000675691.1:ENST00000676004.1:ENST00000675270.1:ENST00000675403.1:ENST00000676212.1:ENST00000675045.1:ENST00000675035.1:ENST00000676168.1:ENST00000674652.1:ENST00000675133.1:ENST00000675120.1:ENST00000674811.1:ENST00000674512.1:ENST00000675853.1:ENST00000565361.3:ENST00000676247.1:ENST00000674848.1:ENST00000674962.1:ENST00000675371.1:ENST00000675986.1:ENST00000674768.1:ENST00000675297.1:ENST00000675751.1:ENST00000564359.6:ENST00000675338.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	46	2	1.9039	3.544355	5.18481	0.0501498	6.21872e-4	0.156383	0.0223951
chr1	21722924	21723019	396246	0	-	0.357895	(0.35,0.378]	chr1	47269	8	INTRON	INTRON	USP48	ENSG00000090686.16	ENST00000400301.5:ENST00000308271.14:ENST00000374732.7:ENST00000529637.5:ENST00000487880.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	45	2	2.04358	3.5443499999999997	5.04512	0.0329533	0.00393262	0.145171	0.0548259
chr6	36519836	36519936	3089102	0	-	0.37	(0.35,0.378]	chr6	288960	16	INTRON	INTRON	STK38	ENSG00000112079.9	ENST00000229812.8	protein_coding	protein_coding	protein_coding	protein_coding	2	45	2	2.04358	3.5443499999999997	5.04512	0.0329533	0.00393262	0.145171	0.0548259
chr7	99127482	99127581	3582979	0	-	0.353535	(0.35,0.378]	chr7	333710	59	INTRON	INTRON	SMURF1	ENSG00000198742.10	ENST00000361368.7:ENST00000361125.1:ENST00000472627.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	77	2	3.54186	3.5443499999999997	3.54684	0.00119142	8.14353e-4	0.0315806	0.02604
chr3	37252283	37252382	1395844	0	+	0.252525	[0,0.28]	chr3	146319	4	INTRON	INTRON	GOLGA4	ENSG00000144674.17	ENST00000435830.6:ENST00000444882.5:ENST00000356847.8:ENST00000450863.6:ENST00000361924.7:ENST00000429018.5:ENST00000431105.1:ENST00000419177.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	219	2	3.18499	3.544315	3.90364	5.45367e-4	2.63701e-5	0.0215432	0.00404036
chr9	112300710	112300810	4317631	0	-	0.43	(0.408,0.44]	chr9	397079	24	INTRON	INTRON	PTBP3	ENSG00000119314.16	ENST00000334318.10:ENST00000458258.5:ENST00000374257.6:ENST00000374255.6:ENST00000343327.6:ENST00000487997.1:ENST00000210227.4:ENST00000450374.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	43	2	2.33431	3.5441450000000003	4.75398	0.0129219	0.00703931	0.0990564	0.0718189
chr10	68757971	68758065	4442654	0	+	0.489362	(0.476,0.515]	chr10	409674	2	INTRON	INTRON	CCAR1	ENSG00000060339.14	ENST00000630771.2:ENST00000543719.5:ENST00000541012.5:ENST00000265872.11:ENST00000539539.5:ENST00000543229.5:ENST00000536012.5:ENST00000543225.5:ENST00000540210.5:ENST00000479143.2:ENST00000543706.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	43	2	2.32001	3.54414	4.76827	0.0136217	0.00600704	0.101682	0.0674604
chr15	22535640	22535740	5974925	0	+	0.5	(0.476,0.515]	chr15	568090	10	INTRON	INTRON	HERC2P2	ENSG00000276550.5	ENST00000613386.4:ENST00000619021.4	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	2	43	2	2.32001	3.54414	4.76827	0.0136217	0.00600704	0.101682	0.0674604
chr10	133407845	133407945	4540357	0	+	0.42	(0.408,0.44]	chr10	419095	47	INTRON	INTRON	MTG1	ENSG00000148824.19	ENST00000477902.6:ENST00000317502.11:ENST00000432508.3:ENST00000460848.5:ENST00000473735.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	71	2	3.33067	3.54411	3.75755	0.0024459	2.62433e-4	0.0445752	0.0143317
chr11	206543	206633	4887933	0	-	0.577778	(0.57,1]	chr11	457298	1	SS5_PROX	SS5_PROX:INTRON	BET1L	ENSG00000177951.18	ENST00000410108.5:ENST00000382762.8:ENST00000325147.13:ENST00000529614.6:ENST00000332865.10:ENST00000486280.1:ENST00000479463.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	28	2	2.38391	3.54409	4.70427	0.0104374	9.25341e-4	0.0902296	0.0278396
chr5	32172745	32172845	2597500	0	-	0.62	(0.57,1]	chr5	246744	285	INTRON	INTRON	GOLPH3	ENSG00000113384.14	ENST00000265070.7:ENST00000503610.5:ENST00000512668.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	28	2	2.38391	3.54409	4.70427	0.0104374	9.25341e-4	0.0902296	0.0278396
chr18	80121837	80121937	6938216	0	+	0.32	(0.28,0.32]	chr18	686196	38	INTRON	INTRON	ADNP2	ENSG00000101544.9	ENST00000262198.9:ENST00000560752.5:ENST00000559951.5:ENST00000560561.1:ENST00000561195.1	protein_coding	protein_coding	protein_coding	protein_coding	3	60	2	1.61031	3.54405	5.47779	0.0600513	0.00187048	0.190658	0.0390476
chr1	25243049	25243127	402300	0	-	0.423077	(0.408,0.44]	chr1	48347	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RSRP1	ENSG00000117616.18	ENST00000243189.12:ENST00000498238.1:ENST00000569495.5:ENST00000568254.5:ENST00000565733.5:ENST00000566395.5:ENST00000473314.6:ENST00000570063.5:ENST00000564223.5:ENST00000475766.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	71	2	3.45019	3.5440199999999997	3.63785	0.00152664	4.70012e-4	0.0353936	0.0196294
chr14	19335151	19335251	5832379	0	-	0.28	[0,0.28]	chr14	553818	4	SS5_PROX	SS5_PROX:INTRON	DUXAP10	ENSG00000244306.11	ENST00000648085.1:ENST00000614614.4:ENST00000612696.4:ENST00000619784.4:ENST00000616922.4:ENST00000624585.3:ENST00000549065.5:ENST00000610531.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	1	49	2	2.89982	3.54386	4.1879	0.0396579	0.0158893	0.161534	0.101453
chr9	130735554	130735654	4214080	0	+	0.35	(0.32,0.35]	chr9	386427	207	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000393293.4	protein_coding	protein_coding	protein_coding	protein_coding	5	180	2	3.35195	3.5438	3.73565	7.48103e-5	2.11801e-5	0.00776079	0.0035558
chr6	169752237	169752337	3035873	0	+	0.41	(0.408,0.44]	chr6	282918	3	SS5_PROX	SS5_PROX:INTRON	ERMARD	ENSG00000130023.16	ENST00000366773.8:ENST00000366772.6:ENST00000590711.5:ENST00000592367.5:ENST00000392095.8:ENST00000592315.5:ENST00000592745.5:ENST00000418781.7:ENST00000586341.5:ENST00000592580.5:ENST00000588437.5:ENST00000588451.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	43	2	2.00768	3.543755	5.07983	0.035843	0.00247652	0.152216	0.0446195
chr2	182987201	182987296	1285507	0	-	0.315789	(0.28,0.32]	chr2	135388	6	INTRON	INTRON	NCKAP1	ENSG00000061676.15	ENST00000361354.9:ENST00000360982.2	protein_coding	protein_coding	protein_coding	protein_coding	6	85	2	1.6518	3.5437499999999997	5.4357	0.0193817	0.00215368	0.119831	0.0417866
chr1	207344958	207345057	303509	0	+	0.525253	(0.515,0.57]	chr1	34926	40	INTRON	INTRON	CD55	ENSG00000196352.18	ENST00000695822.1:ENST00000695823.1:ENST00000695826.1:ENST00000695825.1:ENST00000695827.1:ENST00000645323.1:ENST00000391921.9:ENST00000367064.9:ENST00000314754.12:ENST00000644836.1:ENST00000476590.1:ENST00000465534.5:ENST00000618707.2:ENST00000635614.2:ENST00000695831.1:ENST00000634386.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	31	2	2.68833	3.543665	4.399	0.0184931	0.00708863	0.108861	0.0754923
chr4	1220566	1220665	2094712	0	-	0.535354	(0.515,0.57]	chr4	207127	40	INTRON	INTRON	CTBP1	ENSG00000159692.16	ENST00000382952.8:ENST00000290921.10:ENST00000504092.5:ENST00000510739.1:ENST00000505826.5:ENST00000514669.5:ENST00000506180.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	31	2	2.68833	3.543665	4.399	0.0184931	0.00708863	0.108861	0.0754923
chr21	33461890	33461988	7440795	0	-	0.234694	[0,0.28]	chr21	759350	10	INTRON	INTRON	TMEM50B	ENSG00000142188.17	ENST00000420455.5:ENST00000542230.7:ENST00000441128.5:ENST00000442441.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	106	2	2.86008	3.54366	4.22724	0.0177015	5.69854e-5	0.105304	0.00617188
chr16	28954164	28954264	6334835	0	+	0.37	(0.35,0.378]	chr16	606662	2	SS3_PROX	SS3_PROX:INTRON	NFATC2IP	ENSG00000176953.13	ENST00000564978.5:ENST00000320805.9:ENST00000562977.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	81	2	3.21677	3.543595	3.87042	0.00313804	2.9524e-4	0.0514466	0.0159581
chr12	64419475	64419569	5153036	0	+	0.510638	(0.476,0.515]	chr12	487750	4	SS5_PROX	SS5_PROX:INTRON	XPOT	ENSG00000184575.12	ENST00000332707.10:ENST00000400935.2	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	2.23335	3.54357	4.85379	0.0634557	0.00234214	0.177047	0.0442989
chr16	14615693	14615793	6449704	0	-	0.48	(0.476,0.515]	chr16	621343	45	INTRON	INTRON	PARN	ENSG00000140694.17	ENST00000651865.1:ENST00000437198.7:ENST00000651348.1:ENST00000650990.1:ENST00000651760.1:ENST00000652541.1:ENST00000652727.1:ENST00000652066.1:ENST00000651300.1:ENST00000420015.6:ENST00000652051.1:ENST00000341484.11:ENST00000539279.5:ENST00000651049.1:ENST00000650960.1:ENST00000651634.1:ENST00000564113.6:ENST00000652411.1:ENST00000652501.1:ENST00000651027.1:ENST00000651913.1:ENST00000563641.6:ENST00000651241.1:ENST00000538472.5:ENST00000566021.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	34	2	2.23335	3.54357	4.85379	0.0634557	0.00234214	0.177047	0.0442989
chr7	119678961	119679061	3628126	0	-	0.36	(0.35,0.378]	chr7	337315	1785	INTRON	INTRON	LINC02476	ENSG00000225546.6	ENST00000660268.1	lncRNA	lncRNA	lncRNA	lncRNA	7	210	2	2.99689	3.54354	4.09019	3.23681e-5	5.06002e-6	0.00453487	0.00166411
chr14	76463427	76463526	5798641	0	+	0.474747	(0.44,0.476]	chr14	549266	1	INTRON	INTRON	ESRRB	ENSG00000119715.15	ENST00000512784.6:ENST00000380887.7:ENST00000505752.6:ENST00000644823.1:ENST00000509242.5:ENST00000556177.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	33	2	2.9586	3.543515	4.12843	0.0337192	0.00758318	0.134145	0.0773151
chr16	1372011	1372111	6427540	0	-	0.48	(0.476,0.515]	chr16	617815	4	SS3_PROX	SS3_PROX:INTRON	UNKL	ENSG00000059145.19	ENST00000389221.9:ENST00000248104.11:ENST00000403703.5:ENST00000674376.1:ENST00000397464.5:ENST00000508903.7:ENST00000402641.6:ENST00000513783.1:ENST00000515195.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	113	2	2.81214	3.5434149999999995	4.27469	5.41922e-4	2.76255e-5	0.0211086	0.0043098
chr10	77922223	77922323	4654749	0	-	0.49	(0.476,0.515]	chr10	428776	98	INTRON	INTRON	DLG5	ENSG00000151208.17	ENST00000372391.7	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	2.56033	3.543165	4.526	0.0287634	0.00699701	0.127066	0.0754576
chr11	68441010	68441109	4817243	0	+	0.515152	(0.476,0.515]	chr11	448882	7	INTRON	INTRON	LRP5	ENSG00000162337.12	ENST00000294304.12:ENST00000529993.5:ENST00000529702.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	34	2	2.56033	3.543165	4.526	0.0287634	0.00699701	0.127066	0.0754576
chr11	72076167	72076267	4976798	0	-	0.5	(0.476,0.515]	chr11	470151	2	SS5_PROX	SS5_PROX:INTRON	NUMA1	ENSG00000137497.19	ENST00000393695.8:ENST00000358965.10:ENST00000351960.10:ENST00000613205.4:ENST00000537217.5:ENST00000540843.5:ENST00000543937.5:ENST00000368959.9:ENST00000541719.5:ENST00000366394.7:ENST00000541641.5:ENST00000537905.5:ENST00000535111.5:ENST00000546131.1:ENST00000543450.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	34	2	2.56033	3.543165	4.526	0.0287634	0.00699701	0.127066	0.0754576
chr17	28081147	28081246	6582906	0	+	0.484848	(0.476,0.515]	chr17	639837	192	INTRON	INTRON	NLK	ENSG00000087095.13	ENST00000407008.8:ENST00000496808.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	34	2	2.56033	3.543165	4.526	0.0287634	0.00699701	0.127066	0.0754576
chr1	40383877	40383977	81545	0	+	0.47	(0.44,0.476]	chr1	10553	88	INTRON	INTRON	SMAP2	ENSG00000084070.12	ENST00000435168.6:ENST00000372718.8:ENST00000372708.5	protein_coding	protein_coding	protein_coding	protein_coding	14	399	2	3.16802	3.543135	3.91825	3.30258e-6	1.10801e-8	0.00128575	3.58435e-5
chr15	101275861	101275950	6269871	0	-	0.348315	(0.32,0.35]	chr15	597970	1	INTRON	INTRON	SELENOS	ENSG00000131871.15	ENST00000398226.7:ENST00000531964.5:ENST00000526043.1:ENST00000526049.6:ENST00000528346.1:ENST00000527833.5:ENST00000529968.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	38	2	2.4458	3.54313	4.64046	0.0425977	0.00724767	0.148082	0.0756327
chr5	72883632	72883732	2387812	0	+	0.33	(0.32,0.35]	chr5	230431	4	SS5_PROX	SS5_PROX:INTRON	TNPO1	ENSG00000083312.19	ENST00000680533.1:ENST00000337273.10:ENST00000680025.1:ENST00000523768.5:ENST00000681711.1:ENST00000679378.1:ENST00000506351.6:ENST00000505082.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	38	2	2.4458	3.54313	4.64046	0.0425977	0.00724767	0.148082	0.0756327
chrX	109733138	109733226	7861699	0	-	0.727273	(0.57,1]	chrX	801458	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	ACSL4	ENSG00000068366.21	ENST00000469796.7:ENST00000672401.1:ENST00000348502.10:ENST00000340800.7:ENST00000684030.1:ENST00000682031.1:ENST00000671846.1:ENST00000672282.1:ENST00000502391.6:ENST00000684414.1:ENST00000673016.1:ENST00000508092.5:ENST00000504383.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	91	2	3.11117	3.543075	3.97498	1.50448e-5	1.04936e-6	0.00292449	6.32938e-4
chr15	42514637	42514736	6009798	0	+	0.373737	(0.35,0.378]	chr15	572166	8	INTRON	INTRON	SNAP23	ENSG00000092531.10	ENST00000561526.5:ENST00000568451.5:ENST00000563765.5:ENST00000349777.5:ENST00000249647.8:ENST00000564153.5:ENST00000567094.5:ENST00000566327.5:ENST00000568331.5:ENST00000566035.5:ENST00000568859.5:ENST00000568514.5:ENST00000397138.5:ENST00000563873.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	103	2	2.96893	3.5430399999999995	4.11715	0.00149997	4.60289e-5	0.0351802	0.00552588
chr2	187550314	187550413	1289485	0	-	0.353535	(0.35,0.378]	chr2	135627	53	INTRON	INTRON	TFPI	ENSG00000003436.16	ENST00000233156.9:ENST00000409676.5:ENST00000339091.8:ENST00000421427.5:ENST00000437725.5:ENST00000453013.5:ENST00000417013.5:ENST00000420747.1	protein_coding	protein_coding	protein_coding	protein_coding	3	54	2	1.87586	3.5430200000000003	5.21018	0.0268864	0.00228003	0.135275	0.0426265
chr7	128750690	128750789	3408494	0	+	0.363636	(0.35,0.378]	chr7	318435	15	INTRON	INTRON	CALU	ENSG00000128595.17	ENST00000535011.6:ENST00000542996.6:ENST00000249364.9:ENST00000449187.6:ENST00000479257.5	protein_coding	protein_coding	protein_coding	protein_coding	3	54	2	1.87586	3.5430200000000003	5.21018	0.0268864	0.00228003	0.135275	0.0426265
chr18	9363267	9363367	6870729	0	+	0.35	(0.32,0.35]	chr18	680672	28	INTRON	INTRON	TWSG1	ENSG00000128791.12	ENST00000583147.5:ENST00000262120.10:ENST00000581641.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	50	2	2.6297	3.5429950000000003	4.45629	0.0246089	0.00476699	0.12011	0.0636201
chr10	58392658	58392758	4435696	0	+	0.45	(0.44,0.476]	chr10	409149	14	INTRON	INTRON	TFAM	ENSG00000108064.11	ENST00000373899.3:ENST00000487519.6:ENST00000373895.7:ENST00000395377.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	34	2	2.38219	3.5428699999999997	4.70355	0.045456	0.00383786	0.149888	0.0562562
chr11	62788618	62788714	4961242	0	-	0.46875	(0.44,0.476]	chr11	466856	3	INTRON	INTRON	TMEM223	ENSG00000168569.8	ENST00000527073.1:ENST00000528367.1:ENST00000525631.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	34	2	2.38219	3.5428699999999997	4.70355	0.045456	0.00383786	0.149888	0.0562562
chr16	74357862	74357961	6523445	0	-	0.464646	(0.44,0.476]	chr16	631620	36	INTRON	INTRON	PDPR2P	ENSG00000214331.8	ENST00000566802.5:ENST00000563377.5:ENST00000429810.2	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:transcribed_unprocessed_pseudogene	1	34	2	2.38219	3.5428699999999997	4.70355	0.045456	0.00383786	0.149888	0.0562562
chr17	50438552	50438651	6626205	0	+	0.454545	(0.44,0.476]	chr17	646911	112	INTRON	INTRON	ACSF2	ENSG00000167107.13	ENST00000510410.5:ENST00000300441.9:ENST00000504392.5:ENST00000506582.5:ENST00000503408.5:ENST00000504945.1:ENST00000427954.6:ENST00000502667.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	34	2	2.38219	3.5428699999999997	4.70355	0.045456	0.00383786	0.149888	0.0562562
chr5	105111204	105111304	2693538	0	-	0.45	(0.44,0.476]	chr5	254244	1019	INTRON	INTRON	ENSG00000251574:ENSG00000253584	ENSG00000251574.8:ENSG00000253584.1	ENST00000503650.1:ENST00000522464.1	lncRNA	lncRNA	lncRNA	lncRNA	1	34	2	2.38219	3.5428699999999997	4.70355	0.045456	0.00383786	0.149888	0.0562562
chr8	129396358	129396457	4059233	0	-	0.474747	(0.44,0.476]	chr8	369574	61	INTRON	INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1:ENST00000676273.1:ENST00000667643.1:ENST00000668791.1:ENST00000663716.1:ENST00000663572.1:ENST00000676148.1:ENST00000667962.1:ENST00000674877.1:ENST00000675316.1:ENST00000674656.1:ENST00000446592.7:ENST00000667341.1:ENST00000675186.1:ENST00000652971.1:ENST00000661447.1:ENST00000674863.1:ENST00000675498.1:ENST00000675527.1:ENST00000676108.1:ENST00000657647.1:ENST00000675589.1:ENST00000675913.1:ENST00000675109.1:ENST00000671632.1:ENST00000671311.1:ENST00000676099.1:ENST00000660652.1:ENST00000675522.1:ENST00000675183.1:ENST00000658861.1:ENST00000663991.1:ENST00000675044.1:ENST00000675435.1:ENST00000674639.1:ENST00000676069.1:ENST00000675532.1:ENST00000674762.1:ENST00000523151.6:ENST00000675948.1:ENST00000665364.1:ENST00000657251.1:ENST00000675166.1:ENST00000674883.1:ENST00000675867.1:ENST00000674580.1:ENST00000675393.1:ENST00000520048.1:ENST00000674906.1:ENST00000676030.1:ENST00000670588.1:ENST00000675072.1:ENST00000664936.1:ENST00000652914.1	lncRNA	lncRNA	lncRNA	lncRNA	1	34	2	2.38219	3.5428699999999997	4.70355	0.045456	0.00383786	0.149888	0.0562562
chr9	92089340	92089440	4286192	0	-	0.45	(0.44,0.476]	chr9	394050	80	INTRON	INTRON	SPTLC1	ENSG00000090054.16	ENST00000689261.1:ENST00000690095.1:ENST00000646534.1:ENST00000262554.7:ENST00000687427.1:ENST00000690139.1:ENST00000687972.1:ENST00000689401.1:ENST00000686600.1:ENST00000686799.1:ENST00000644140.1:ENST00000692458.1:ENST00000687817.1:ENST00000693147.1:ENST00000482632.6:ENST00000689423.1:ENST00000337841.4:ENST00000477888.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	34	2	2.38219	3.5428699999999997	4.70355	0.045456	0.00383786	0.149888	0.0562562
chr10	21682855	21682954	4405916	0	+	0.323232	(0.32,0.35]	chr10	406529	2	INTRON	INTRON	MLLT10	ENSG00000078403.17	ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000651298.1:ENST00000377059.7:ENST00000651382.1:ENST00000438473.6:ENST00000420525.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	110	2	3.50587	3.54283	3.57979	0.00118589	7.86316e-5	0.0315652	0.00738014
chr7	99037787	99037887	3582064	0	-	0.56	(0.515,0.57]	chr7	333616	2	INTRON	INTRON	SMURF1	ENSG00000198742.10	ENST00000361368.7:ENST00000361125.1	protein_coding	protein_coding	protein_coding	protein_coding	3	82	2	3.16037	3.5426849999999996	3.925	4.09074e-4	8.71525e-5	0.0185763	0.00783545
chr2	235539335	235539435	1041790	0	+	0.54	(0.515,0.57]	chr2	111222	144	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1:ENST00000402604.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	65	2	1.65501	3.5425999999999997	5.43019	0.016231	2.60422e-4	0.109464	0.0148796
chrX	109715565	109715665	7861523	0	-	0.38	(0.378,0.408]	chrX	801455	190	INTRON	INTRON	ACSL4	ENSG00000068366.21	ENST00000469796.7:ENST00000672401.1:ENST00000348502.10:ENST00000340800.7:ENST00000684030.1:ENST00000682031.1:ENST00000671846.1:ENST00000672282.1:ENST00000502391.6:ENST00000684414.1:ENST00000673016.1:ENST00000508092.5:ENST00000504383.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	60	2	1.80483	3.54258	5.28033	0.0201276	0.00143651	0.121243	0.0340925
chr11	120434509	120434609	4877194	0	+	0.34	(0.32,0.35]	chr11	455856	22	INTRON	INTRON	ARHGEF12	ENSG00000196914.9	ENST00000397843.7:ENST00000356641.7:ENST00000532993.5:ENST00000529970.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	47	2	2.25173	3.5423	4.83287	0.0180122	0.0095071	0.114436	0.0817766
chr3	47714314	47714414	1684395	0	-	0.35	(0.32,0.35]	chr3	172078	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	SMARCC1	ENSG00000173473.11	ENST00000254480.10:ENST00000425518.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	47	2	2.25173	3.5423	4.83287	0.0180122	0.0095071	0.114436	0.0817766
chr4	73218278	73218378	2160421	0	-	0.37	(0.35,0.378]	chr4	212794	404	INTRON	INTRON	ANKRD17	ENSG00000132466.20	ENST00000358602.9:ENST00000558247.5:ENST00000330838.10:ENST00000509867.6:ENST00000561029.1:ENST00000559367.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	49	2	1.87717	3.5423	5.20743	0.0555068	7.78116e-4	0.165463	0.0256531
chr9	4740137	4740237	4228919	0	-	0.33	(0.32,0.35]	chr9	388786	172	INTRON	INTRON	AK3	ENSG00000147853.17	ENST00000381809.8:ENST00000611749.4:ENST00000359883.6:ENST00000447596.4	protein_coding	protein_coding	protein_coding	protein_coding	2	47	2	2.25173	3.5423	4.83287	0.0180122	0.0095071	0.114436	0.0817766
chr10	96836935	96837035	4503011	0	+	0.36	(0.35,0.378]	chr10	414529	27	INTRON	INTRON	LCOR	ENSG00000196233.14	ENST00000676067.1:ENST00000676257.1:ENST00000676187.1:ENST00000675151.1:ENST00000675687.1:ENST00000675251.1:ENST00000676123.1:ENST00000371103.8:ENST00000675471.1:ENST00000421806.4:ENST00000675902.1:ENST00000540664.6:ENST00000676414.1:ENST00000675537.1:ENST00000675117.1:ENST00000675125.1:ENST00000356016.7:ENST00000371097.8:ENST00000676381.1:ENST00000674796.1:ENST00000674725.1:ENST00000675971.1:ENST00000676373.1:ENST00000676314.1:ENST00000675915.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	49	2	1.93432	3.5422399999999996	5.15016	0.0481438	9.78549e-4	0.153019	0.0287765
chr13	110911058	110911153	5650610	0	-	0.368421	(0.35,0.378]	chr13	538392	3	SS3_PROX	SS3_PROX:INTRON	ANKRD10	ENSG00000088448.14	ENST00000267339.6:ENST00000310847.8:ENST00000465753.1:ENST00000494859.5:ENST00000460846.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	49	2	1.93432	3.5422399999999996	5.15016	0.0481438	9.78549e-4	0.153019	0.0287765
chr16	18133962	18134062	6453973	0	-	0.31	(0.28,0.32]	chr16	621960	1302	INTRON	INTRON	ENSG00000259929:ENSG00000260242	ENSG00000259929.5:ENSG00000260242.1	ENST00000567304.1:ENST00000563866.1	lncRNA	lncRNA	lncRNA	lncRNA	3	67	2	1.83303	3.54222	5.25141	0.0370023	0.00125199	0.139194	0.0328543
chr19	45356769	45356869	7190678	0	-	0.53	(0.515,0.57]	chr19	728018	1	SS5_PROX	SS5_PROX:INTRON	ERCC2	ENSG00000104884.17	ENST00000391945.10:ENST00000682508.1:ENST00000684218.1:ENST00000684407.1:ENST00000684458.1:ENST00000684468.1:ENST00000684264.1:ENST00000682414.1:ENST00000646507.1:ENST00000391944.8:ENST00000391942.6:ENST00000588652.5:ENST00000391941.6:ENST00000587376.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	50	2	2.01978	3.542185	5.06459	0.0165522	6.03964e-4	0.102621	0.0223465
chr8	93737027	93737116	3992356	0	-	0.52809	(0.515,0.57]	chr8	365427	2	SS5_PROX	SS5_PROX:INTRON	RBM12B	ENSG00000183808.12	ENST00000399300.7:ENST00000520560.6:ENST00000518597.2:ENST00000517700.6:ENST00000519109.6:ENST00000520961.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	219	2	3.24934	3.54216	3.83498	2.56184e-6	5.85812e-7	0.00112569	4.16309e-4
chr10	1078503	1078594	4379620	0	+	0.362637	(0.35,0.378]	chr10	403926	1	INTRON	INTRON	WDR37	ENSG00000047056.17	ENST00000358220.5:ENST00000263150.9:ENST00000381329.5:ENST00000650072.1:ENST00000436154.1	protein_coding	protein_coding	protein_coding	protein_coding	3	54	2	1.92704	3.542135	5.15723	0.0228255	0.00272706	0.125469	0.0467523
chr2	61467253	61467353	1130519	0	-	0.36	(0.35,0.378]	chr2	121499	461	INTRON	INTRON	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000453133.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	54	2	1.82281	3.5420300000000005	5.26125	0.0316938	0.00191117	0.144635	0.03947
chr1	223963070	223963169	643503	0	-	0.323232	(0.32,0.35]	chr1	75994	4	INTRON	INTRON	GTF2IP20	ENSG00000272645.4	ENST00000634905.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	2	47	2	1.95271	3.54197	5.13123	0.0431213	0.00394704	0.162255	0.0548259
chr16	22320897	22320994	6321783	0	+	0.42268	(0.408,0.44]	chr16	605260	16	INTRON	INTRON	POLR3E	ENSG00000058600.16	ENST00000615879.4:ENST00000299853.10:ENST00000564209.5:ENST00000418581.6:ENST00000359210.8:ENST00000564061.5:ENST00000564750.5:ENST00000569757.1:ENST00000569787.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	71	2	3.28852	3.54193	3.79534	0.00287185	2.17043e-4	0.0474836	0.0129235
chr19	1426746	1426846	6995294	0	+	0.58	(0.57,1]	chr19	693206	5	EXON_MRNA	EXON_MRNA:INTRON	DAZAP1	ENSG00000071626.17	ENST00000336761.10:ENST00000233078.9:ENST00000592522.5:ENST00000586579.5:ENST00000587079.5:ENST00000592453.2:ENST00000589484.5:ENST00000585485.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	21	263	2	2.71094	3.541725	4.37251	5.58307e-7	2.71267e-11	4.00823e-4	4.25315e-7
chr10	130178249	130178348	4536757	0	+	0.525253	(0.515,0.57]	chr10	418830	28	INTRON	INTRON	GLRX3	ENSG00000108010.12	ENST00000331244.10:ENST00000481034.1:ENST00000368644.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	111	2	2.92717	3.541595	4.15602	7.93019e-5	3.43075e-5	0.0074133	0.00494726
chr1	112617506	112617606	523568	0	-	0.5	(0.476,0.515]	chr1	61599	1	SS5_PROX	SS5_PROX:INTRON	ST7L	ENSG00000007341.19	ENST00000358039.9:ENST00000490715.5:ENST00000360743.8:ENST00000361846.7:ENST00000480988.5:ENST00000369669.5:ENST00000490067.5:ENST00000343210.11:ENST00000369666.5:ENST00000497457.5:ENST00000463235.5:ENST00000497235.5:ENST00000369664.1:ENST00000479436.5:ENST00000459630.5:ENST00000470519.5:ENST00000477332.5:ENST00000473206.5:ENST00000498383.5:ENST00000470683.1:ENST00000467335.5:ENST00000492274.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	70	2	3.41728	3.5414649999999996	3.66565	0.00165726	4.18031e-4	0.0369207	0.0182827
chr8	97693877	97693977	3809561	0	+	0.48	(0.476,0.515]	chr8	352866	23	INTRON	INTRON	MTDH	ENSG00000147649.10	ENST00000336273.8:ENST00000519934.5:ENST00000519293.1:ENST00000521933.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	33	2	2.94692	3.54139	4.13586	0.031846	0.00794331	0.13151	0.0797304
chr1	7776775	7776869	15577	0	+	0.468085	(0.44,0.476]	chr1	1305	1	SS3_PROX	SS3_PROX:INTRON	VAMP3	ENSG00000049245.13	ENST00000054666.11:ENST00000470357.1	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	2.74372	3.5413550000000003	4.33899	0.0206616	0.0153007	0.110999	0.108569
chr1	88885562	88885662	499454	0	-	0.47	(0.44,0.476]	chr1	59244	211	INTRON	INTRON	GTF2B	ENSG00000137947.12	ENST00000370500.10:ENST00000448623.5:ENST00000494819.5:ENST00000418217.1:ENST00000486078.1:ENST00000471296.5:ENST00000471471.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	32	2	2.74372	3.5413550000000003	4.33899	0.0206616	0.0153007	0.110999	0.108569
chr18	12854767	12854867	6950446	0	-	0.45	(0.44,0.476]	chr18	687597	109	INTRON	INTRON	PTPN2	ENSG00000175354.20	ENST00000327283.7:ENST00000591115.5:ENST00000353319.8:ENST00000309660.10:ENST00000646492.1:ENST00000645191.1:ENST00000645816.1:ENST00000591305.5:ENST00000592776.1:ENST00000589216.1:ENST00000592059.5:ENST00000589086.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	32	2	2.74372	3.5413550000000003	4.33899	0.0206616	0.0153007	0.110999	0.108569
chr3	43523020	43523120	1674444	0	-	0.45	(0.44,0.476]	chr3	170972	899	INTRON	INTRON	ANO10	ENSG00000160746.13	ENST00000292246.8:ENST00000350459.8:ENST00000396091.7:ENST00000414522.6:ENST00000451430.6:ENST00000448045.1	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	2.74372	3.5413550000000003	4.33899	0.0206616	0.0153007	0.110999	0.108569
chr4	159130202	159130302	2073771	0	+	0.45	(0.44,0.476]	chr4	205172	256	INTRON	INTRON	RAPGEF2	ENSG00000109756.10	ENST00000644474.1:ENST00000691494.1:ENST00000505478.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	32	2	2.74372	3.5413550000000003	4.33899	0.0206616	0.0153007	0.110999	0.108569
chr7	101958989	101959089	3367783	0	+	0.46	(0.44,0.476]	chr7	315229	260	INTRON	INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000497815.5:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000558469.5:ENST00000560541.5:ENST00000558836.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	32	2	2.74372	3.5413550000000003	4.33899	0.0206616	0.0153007	0.110999	0.108569
chr14	92039685	92039778	5959871	0	-	0.580645	(0.57,1]	chr14	565873	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	TRIP11	ENSG00000100815.12	ENST00000267622.8:ENST00000555516.6:ENST00000555105.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	81	2	3.44969	3.54121	3.63273	1.27941e-5	5.72554e-6	0.00265999	0.00177762
chr9	111412348	111412448	4314553	0	-	0.37	(0.35,0.378]	chr9	396737	2	SS3_PROX	SS3_PROX:INTRON	ECPAS	ENSG00000136813.15	ENST00000684092.1:ENST00000338205.9:ENST00000259335.8:ENST00000602447.5	protein_coding	protein_coding	protein_coding	protein_coding	3	55	2	2.15877	3.5411599999999996	4.92355	0.0102036	0.00573514	0.089002	0.0657377
chr1	28932062	28932162	59131	0	+	0.3	(0.28,0.32]	chr1	7621	169	INTRON	INTRON	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000647918.1:ENST00000646800.1:ENST00000644342.1:ENST00000646189.1:ENST00000482464.6:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000646260.1:ENST00000373798.5:ENST00000644600.1:ENST00000649674.1:ENST00000643173.1:ENST00000343067.9:ENST00000644780.1:ENST00000650265.1:ENST00000648181.1:ENST00000643604.1:ENST00000648891.1:ENST00000373797.2:ENST00000349460.9:ENST00000645184.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	118	2	3.29657	3.54096	3.78535	6.21154e-4	2.79563e-4	0.0229151	0.0148832
chr5	65578826	65578923	2368791	0	+	0.298969	(0.28,0.32]	chr5	228256	14	INTRON	INTRON	PPWD1	ENSG00000113593.12	ENST00000535264.5:ENST00000538977.5:ENST00000261308.10:ENST00000510930.5:ENST00000511908.5:ENST00000514172.1:ENST00000511334.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	88	2	3.43158	3.54087	3.65016	0.00244075	6.39301e-4	0.0445752	0.0228666
chr1	1776892	1776991	361721	0	-	0.464646	(0.44,0.476]	chr1	42219	111	INTRON	INTRON	NADK	ENSG00000008130.15	ENST00000378625.5:ENST00000341991.7:ENST00000341426.9:ENST00000492845.6:ENST00000492768.5:ENST00000460602.5:ENST00000464373.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	32	2	2.39604	3.54084	4.68564	0.0404291	0.00816201	0.161534	0.0766625
chr15	101970428	101970527	6117559	0	+	0.474747	(0.44,0.476]	chr15	582296	38	INTRON	INTRON	WASH3P	ENSG00000185596.16	ENST00000558686.5:ENST00000354296.9:ENST00000559163.6:ENST00000557932.5:ENST00000558784.5:ENST00000560956.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	1	32	2	2.39604	3.54084	4.68564	0.0404291	0.00816201	0.161534	0.0766625
chr21	36957850	36957949	7461480	0	-	0.575758	(0.57,1]	chr21	760151	92	INTRON	INTRON	HLCS	ENSG00000159267.17	ENST00000674895.3:ENST00000336648.8:ENST00000612277.4:ENST00000399120.5:ENST00000675307.1:ENST00000675057.1:ENST00000448340.5:ENST00000427746.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	28	2	2.47993	3.54077	4.60161	0.007207	0.00142229	0.0756278	0.0340865
chr1	2268636	2268735	2570	0	+	0.545455	(0.515,0.57]	chr1	557	202	INTRON	INTRON	SKI	ENSG00000157933.10	ENST00000378536.5:ENST00000508416.1:ENST00000478223.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	40	2	1.86007	3.5407399999999996	5.22141	0.0526611	6.44141e-4	0.178401	0.0231685
chr1	151177648	151177732	553582	0	-	0.440476	(0.44,0.476]	chr1	65230	2	SS5_PROX	SS5_PROX:INTRON	VPS72	ENSG00000163159.15	ENST00000368892.9:ENST00000354473.4:ENST00000496809.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	34	2	2.29842	3.5406750000000002	4.78293	0.0552483	0.00292033	0.165463	0.0494641
chr15	79921373	79921471	6241156	0	-	0.44898	(0.44,0.476]	chr15	595788	13	EXON_LNCRNA	EXON_LNCRNA:INTRON	ST20-MTHFS:ST20:ENSG00000278600	ENSG00000259332.3:ENSG00000180953.11:ENSG00000278600.1	ENST00000615374.5:ENST00000479961.1:ENST00000494999.1:ENST00000485386.1:ENST00000618835.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	1	34	2	2.29842	3.5406750000000002	4.78293	0.0552483	0.00292033	0.165463	0.0494641
chr7	64925597	64925694	3321315	0	+	0.453608	(0.44,0.476]	chr7	308800	13	INTRON	INTRON	ZNF273	ENSG00000198039.12	ENST00000527278.5:ENST00000476120.2:ENST00000395375.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	34	2	2.29842	3.5406750000000002	4.78293	0.0552483	0.00292033	0.165463	0.0494641
chr9	130586984	130587084	4213166	0	+	0.46	(0.44,0.476]	chr9	386268	50	INTRON	INTRON	FUBP3	ENSG00000107164.16	ENST00000319725.10:ENST00000650723.1:ENST00000465949.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	34	2	2.29842	3.5406750000000002	4.78293	0.0552483	0.00292033	0.165463	0.0494641
chr7	152411540	152411640	3681049	0	-	0.48	(0.476,0.515]	chr7	341660	525	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000682301.1:ENST00000452749.2:ENST00000680867.1:ENST00000683800.1:ENST00000684278.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	66	2	1.77073	3.540655	5.31058	0.0151174	9.15544e-4	0.108513	0.0278396
chr7	72830913	72831007	3329718	0	+	0.287234	(0.28,0.32]	chr7	309534	1	SS5_PROX	SS5_PROX:INTRON	SBDSP1	ENSG00000225648.6	ENST00000423945.5:ENST00000685034.1:ENST00000453858.2:ENST00000691023.1:ENST00000415772.5:ENST00000456312.5:ENST00000437201.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	2	55	2	2.05458	3.5406199999999997	5.02666	0.0381508	0.0027935	0.141764	0.0488769
chr5	141592243	141592343	2739921	0	-	0.36	(0.35,0.378]	chr5	258168	36	INTRON	INTRON	DIAPH1	ENSG00000131504.18	ENST00000647433.1:ENST00000389054.8:ENST00000518047.5:ENST00000523100.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	55	2	1.58862	3.5406	5.49258	0.0615516	8.19894e-4	0.193423	0.0264086
chr4	1959840	1959940	1911491	0	+	0.38	(0.378,0.408]	chr4	191845	1	SS5_PROX	SS5_PROX:INTRON	NSD2	ENSG00000109685.19	ENST00000508803.6:ENST00000382891.9:ENST00000353275.9:ENST00000382892.6:ENST00000382895.7:ENST00000312087.10:ENST00000677559.1:ENST00000482415.6:ENST00000382888.3:ENST00000679039.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	58	2	1.90812	3.540465	5.17281	0.0264295	7.27294e-4	0.122506	0.0245647
chr1	39468030	39468127	78662	0	+	0.443299	(0.44,0.476]	chr1	10210	31	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	MACF1	ENSG00000127603.32	ENST00000361689.7:ENST00000567887.5:ENST00000372915.8:ENST00000564288.6:ENST00000671089.2:ENST00000372925.6:ENST00000289893.8:ENST00000686067.1:ENST00000683517.1:ENST00000691623.1:ENST00000360115.8:ENST00000446276.5:ENST00000686657.1:ENST00000442046.5:ENST00000422234.2:ENST00000462496.5:ENST00000462103.1:ENST00000687885.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	34	2	2.46135	3.540445	4.61954	0.0374637	0.00506805	0.140008	0.0646039
chr10	63251959	63252059	4633247	0	-	0.45	(0.44,0.476]	chr10	426215	316	INTRON	INTRON	JMJD1C	ENSG00000171988.20	ENST00000399262.7:ENST00000402544.5:ENST00000542921.5:ENST00000469152.5:ENST00000489372.4:ENST00000633035.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	34	2	2.46135	3.540445	4.61954	0.0374637	0.00506805	0.140008	0.0646039
chr10	72749722	72749822	4450671	0	+	0.46	(0.44,0.476]	chr10	410760	128	INTRON	INTRON	MCU	ENSG00000156026.15	ENST00000373053.8:ENST00000357157.10:ENST00000604679.5:ENST00000604372.5:ENST00000603649.5:ENST00000605597.5:ENST00000536019.5:ENST00000604152.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	34	2	2.46135	3.540445	4.61954	0.0374637	0.00506805	0.140008	0.0646039
chr3	38387323	38387423	1399898	0	+	0.4	(0.378,0.408]	chr3	146865	76	INTRON	INTRON	XYLB	ENSG00000093217.11	ENST00000207870.8:ENST00000650590.1:ENST00000424034.5:ENST00000649234.1:ENST00000472721.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	48	2	2.16303	3.540395	4.91776	0.0252473	0.00196368	0.12011	0.0411469
chr10	21941236	21941336	4578058	0	-	0.39	(0.378,0.408]	chr10	421947	117	INTRON	INTRON	DNAJC1	ENSG00000136770.11	ENST00000376980.8:ENST00000476103.3:ENST00000447548.5:ENST00000376946.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	35	2	2.30961	3.54033	4.77105	0.055088	0.00330823	0.165463	0.0527031
chr10	49897972	49898072	4615757	0	-	0.38	(0.378,0.408]	chr10	425184	123	INTRON	INTRON	PARG	ENSG00000227345.9	ENST00000402038.7:ENST00000616448.2:ENST00000614063.4:ENST00000610922.1:ENST00000611974.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	35	2	2.30961	3.54033	4.77105	0.055088	0.00330823	0.165463	0.0527031
chr17	40025459	40025557	6767621	0	-	0.387755	(0.378,0.408]	chr17	665746	17	INTRON	INTRON	MED24	ENSG00000008838.21	ENST00000394126.5:ENST00000356271.7:ENST00000394128.7:ENST00000394127.6:ENST00000535508.6:ENST00000501516.7:ENST00000535071.6:ENST00000580720.1:ENST00000580885.5:ENST00000581058.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	35	2	2.30961	3.54033	4.77105	0.055088	0.00330823	0.165463	0.0527031
chr8	30725498	30725597	3932725	0	-	0.383838	(0.378,0.408]	chr8	360269	131	INTRON	INTRON	GSR	ENSG00000104687.14	ENST00000221130.11:ENST00000643653.1:ENST00000643525.1:ENST00000537535.5:ENST00000541648.5:ENST00000546342.5:ENST00000523295.5:ENST00000521479.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	35	2	2.30961	3.54033	4.77105	0.055088	0.00330823	0.165463	0.0527031
chr1	171486035	171486135	253219	0	+	0.47	(0.44,0.476]	chr1	30095	3	SS5_PROX	SS5_PROX:INTRON	PRRC2C	ENSG00000117523.18	ENST00000647382.2:ENST00000367742.7:ENST00000476522.5:ENST00000338920.8:ENST00000467601.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	18	431	2	2.88132	3.5401749999999996	4.19903	1.45098e-6	4.4782e-8	7.22593e-4	8.46643e-5
chr2	174144899	174144999	1269816	0	-	0.21	[0,0.28]	chr2	134282	25	INTRON	INTRON	OLA1	ENSG00000138430.16	ENST00000284719.8:ENST00000344357.9:ENST00000428402.6:ENST00000409546.5:ENST00000429575.1	protein_coding	protein_coding	protein_coding	protein_coding	3	65	2	1.91898	3.54014	5.1613	0.0266433	0.00866441	0.134413	0.0787025
chr6	149543268	149543366	3245543	0	-	0.346939	(0.32,0.35]	chr6	301538	13	INTRON	INTRON	PPIL4	ENSG00000131013.4	ENST00000253329.3	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	2.71269	3.54012	4.36755	0.0300552	0.0181461	0.129138	0.114853
chr7	75295440	75295540	3557887	0	-	0.36	(0.35,0.378]	chr7	331404	1	SS5_PROX	SS5_PROX:INTRON	PMS2P13	ENSG00000276840.1	ENST00000447708.2	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	2	49	2	1.81767	3.5400899999999997	5.26251	0.0640429	6.20882e-4	0.177882	0.0223951
chr15	28664812	28664911	5988697	0	+	0.363636	(0.35,0.378]	chr15	569376	9	INTRON	INTRON	HERC2P9	ENSG00000206149.11	ENST00000529624.5:ENST00000530420.5:ENST00000528584.5	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript:transcribed_unprocessed_pseudogene	2	49	2	1.98929	3.539905	5.09052	0.0417909	0.00123501	0.147075	0.0326215
chr13	113524707	113524807	5549510	0	+	0.34	(0.32,0.35]	chr13	530312	36	INTRON	INTRON	TMCO3	ENSG00000150403.18	ENST00000434316.7:ENST00000375391.5:ENST00000474393.5:ENST00000465556.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	36	2	2.90786	3.539835	4.17181	0.04531	0.00993008	0.149888	0.0877296
chr5	173026315	173026415	2548596	0	+	0.33	(0.32,0.35]	chr5	243304	55	INTRON	INTRON	ATP6V0E1	ENSG00000113732.9	ENST00000519374.6:ENST00000519911.5:ENST00000265093.4	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	2.90786	3.539835	4.17181	0.04531	0.00993008	0.149888	0.0877296
chr22	29282757	29282857	7496211	0	+	0.56	(0.515,0.57]	chr22	764823	2	SS5_PROX	SS5_PROX:INTRON	EWSR1	ENSG00000182944.18	ENST00000629659.2:ENST00000332050.10:ENST00000397938.7:ENST00000406548.5:ENST00000437155.6:ENST00000415761.5:ENST00000331029.11:ENST00000483415.5:ENST00000414183.6:ENST00000333395.10:ENST00000332035.10:ENST00000455726.5:ENST00000479135.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	101	2	3.418	3.539755	3.66151	4.49566e-4	1.18438e-5	0.0196044	0.0025447
chr1	112997033	112997133	187585	0	+	0.34	(0.32,0.35]	chr1	20822	1	SS5_PROX	SS5_PROX:INTRON	SLC16A1-AS1	ENSG00000226419.8	ENST00000435800.6:ENST00000662852.1:ENST00000627431.2:ENST00000665960.1	lncRNA	lncRNA	lncRNA	lncRNA	1	35	2	2.31405	3.53953	4.76501	0.0517107	0.0114287	0.176696	0.0886611
chr3	33550652	33550751	1652285	0	-	0.333333	(0.32,0.35]	chr3	169470	55	INTRON	INTRON	CLASP2	ENSG00000163539.18	ENST00000399362.8:ENST00000682230.1:ENST00000468888.6:ENST00000359576.9:ENST00000650653.1:ENST00000480013.6:ENST00000461133.8:ENST00000635664.1:ENST00000480385.1	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	2.31405	3.53953	4.76501	0.0517107	0.0114287	0.176696	0.0886611
chr5	54370666	54370765	2354329	0	+	0.343434	(0.32,0.35]	chr5	227061	300	INTRON	INTRON	LINC01033	ENSG00000249069.8	ENST00000665899.1:ENST00000653566.1:ENST00000655801.1:ENST00000654906.1:ENST00000667636.1:ENST00000665869.1:ENST00000664079.1:ENST00000659703.1:ENST00000662351.1:ENST00000523194.7:ENST00000665795.1:ENST00000667992.1:ENST00000662022.1:ENST00000657771.1:ENST00000517934.1	lncRNA	lncRNA	lncRNA	lncRNA	1	35	2	2.31405	3.53953	4.76501	0.0517107	0.0114287	0.176696	0.0886611
chr9	124654307	124654407	4348045	0	-	0.34	(0.32,0.35]	chr9	399255	586	INTRON	INTRON	NR6A1	ENSG00000148200.17	ENST00000487099.7:ENST00000373584.7:ENST00000416460.6:ENST00000344523.8	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	2.31405	3.53953	4.76501	0.0517107	0.0114287	0.176696	0.0886611
chr8	224612	224712	3883274	0	-	0.53	(0.515,0.57]	chr8	357290	48	INTRON	INTRON	RPL23AP53	ENSG00000223508.5	ENST00000606975.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	3	47	2	1.7492	3.5393850000000002	5.32957	0.0382504	4.06834e-4	0.15832	0.0185763
chr1	176139238	176139338	591027	0	-	0.3	(0.28,0.32]	chr1	70944	23	INTRON	INTRON	COP1	ENSG00000143207.21	ENST00000367669.8:ENST00000367667.5:ENST00000367666.5:ENST00000649803.1:ENST00000308769.12:ENST00000498306.5:ENST00000491600.5:ENST00000474194.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	40	2	2.39347	3.53937	4.68527	0.0504457	0.00819419	0.156383	0.0810802
chr1	211802581	211802681	631126	0	-	0.32	(0.28,0.32]	chr1	74654	90	INTRON	INTRON	LPGAT1	ENSG00000123684.13	ENST00000366997.9:ENST00000366996.1	protein_coding	protein_coding	protein_coding	protein_coding	1	40	2	2.39347	3.53937	4.68527	0.0504457	0.00819419	0.156383	0.0810802
chr10	837893	837992	4541636	0	-	0.30303	(0.28,0.32]	chr10	419249	10	INTRON	INTRON	LARP4B	ENSG00000107929.16	ENST00000688365.1:ENST00000316157.8:ENST00000690516.1:ENST00000689323.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	40	2	2.39347	3.53937	4.68527	0.0504457	0.00819419	0.156383	0.0810802
chr3	38014424	38014521	1658507	0	-	0.298969	(0.28,0.32]	chr3	170164	24	INTRON	INTRON	PLCD1	ENSG00000187091.14	ENST00000334661.5:ENST00000461445.5:ENST00000463876.5:ENST00000479619.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	40	2	2.39347	3.53937	4.68527	0.0504457	0.00819419	0.156383	0.0810802
chr8	65689799	65689899	3773894	0	+	0.3	(0.28,0.32]	chr8	349985	2	SS5_PROX	SS5_PROX:INTRON	MTFR1	ENSG00000066855.16	ENST00000262146.9:ENST00000522239.5:ENST00000523222.5:ENST00000523170.5:ENST00000424808.6:ENST00000517944.5:ENST00000458689.2:ENST00000518800.5:ENST00000518636.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	40	2	2.39347	3.53937	4.68527	0.0504457	0.00819419	0.156383	0.0810802
chr1	53832791	53832891	460557	0	-	0.49	(0.476,0.515]	chr1	55444	2	SS3_PROX	SS3_PROX:INTRON	NDC1	ENSG00000058804.12	ENST00000371429.4:ENST00000480952.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	32	2	2.73205	3.539265	4.34648	0.0193566	0.0159328	0.109464	0.108861
chr13	95172722	95172821	5638577	0	-	0.484848	(0.476,0.515]	chr13	537099	17	INTRON	INTRON	ABCC4	ENSG00000125257.16	ENST00000645237.2:ENST00000643051.1:ENST00000643842.1:ENST00000646439.1:ENST00000643816.1:ENST00000536256.3:ENST00000643556.1:ENST00000629385.1:ENST00000642524.1:ENST00000645532.1:ENST00000644471.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	32	2	2.73205	3.539265	4.34648	0.0193566	0.0159328	0.109464	0.108861
chr17	81567833	81567933	6848891	0	-	0.48	(0.476,0.515]	chr17	678140	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NPLOC4	ENSG00000182446.14	ENST00000331134.11:ENST00000573519.5:ENST00000571714.5:ENST00000572824.1:ENST00000573212.5:ENST00000576713.6:ENST00000374747.9:ENST00000574897.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	32	2	2.73205	3.539265	4.34648	0.0193566	0.0159328	0.109464	0.108861
chr19	19392617	19392717	7035214	0	+	0.49	(0.476,0.515]	chr19	701429	61	INTRON	INTRON	GATAD2A	ENSG00000167491.18	ENST00000494516.6:ENST00000360315.7:ENST00000609040.5:ENST00000417582.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	32	2	2.73205	3.539265	4.34648	0.0193566	0.0159328	0.109464	0.108861
chr2	96262369	96262468	1180139	0	-	0.484848	(0.476,0.515]	chr2	126176	19	INTRON	INTRON	TMEM127	ENSG00000135956.9	ENST00000258439.8:ENST00000432959.1	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	2.73205	3.539265	4.34648	0.0193566	0.0159328	0.109464	0.108861
chr3	53328035	53328134	1704896	0	-	0.515152	(0.476,0.515]	chr3	175650	82	INTRON	INTRON	DCP1A	ENSG00000272886.6	ENST00000610213.6:ENST00000294241.10:ENST00000560624.5:ENST00000559748.5:ENST00000560076.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	32	2	2.73205	3.539265	4.34648	0.0193566	0.0159328	0.109464	0.108861
chr7	77846769	77846869	3344432	0	+	0.48	(0.476,0.515]	chr7	311490	61	INTRON	INTRON	PHTF2	ENSG00000006576.17	ENST00000422959.7:ENST00000416283.6:ENST00000307305.12:ENST00000424760.5:ENST00000415251.6:ENST00000275575.11:ENST00000450574.5:ENST00000248550.7	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	2.73205	3.539265	4.34648	0.0193566	0.0159328	0.109464	0.108861
chr1	180634669	180634769	269622	0	+	0.36	(0.35,0.378]	chr1	31614	20	INTRON	INTRON	XPR1	ENSG00000143324.14	ENST00000367590.9:ENST00000367589.3	protein_coding	protein_coding	protein_coding	protein_coding	2	45	2	2.2877	3.539245	4.79079	0.0155765	0.00846427	0.109411	0.0776969
chr16	536339	536437	6272293	0	+	0.540816	(0.515,0.57]	chr16	598562	2	SS5_PROX	SS5_PROX:INTRON	CAPN15	ENSG00000103326.12	ENST00000219611.7:ENST00000562370.5:ENST00000567216.5:ENST00000568988.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	61	2	3.40388	3.539205	3.67453	0.00142538	3.27949e-4	0.0340865	0.0160995
chr20	63674986	63675085	7300047	0	+	0.545455	(0.515,0.57]	chr20	742901	5	INTRON	INTRON	RTEL1	ENSG00000258366.11	ENST00000370018.7:ENST00000684971.1:ENST00000692658.1:ENST00000360203.11:ENST00000508582.7:ENST00000686756.1:ENST00000318100.9:ENST00000482936.6:ENST00000687123.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	61	2	3.40388	3.539205	3.67453	0.00142538	3.27949e-4	0.0340865	0.0160995
chr1	40709816	40709916	82541	0	+	0.36	(0.35,0.378]	chr1	10709	2	SS5_PROX	SS5_PROX:INTRON	NFYC	ENSG00000066136.21	ENST00000467203.5:ENST00000424419.6:ENST00000427410.6:ENST00000447388.8:ENST00000425457.6:ENST00000453631.5:ENST00000456393.6:ENST00000372654.5:ENST00000534399.5:ENST00000372653.5:ENST00000372669.8:ENST00000372652.5:ENST00000372651.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	54	2	1.76773	3.539155	5.31058	0.0373863	0.00160599	0.155878	0.0364977
chr7	152209361	152209461	3678991	0	-	0.6	(0.57,1]	chr7	341526	5	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000683200.1:ENST00000682283.1:ENST00000473186.5:ENST00000679882.1:ENST00000680969.1:ENST00000681033.1:ENST00000682176.1:ENST00000679645.1:ENST00000684550.1:ENST00000489110.2:ENST00000681838.1:ENST00000683490.1:ENST00000684623.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	61	2	2.96471	3.539085	4.11346	1.58729e-4	1.70324e-5	0.0108333	0.00330681
chr22	20088686	20088783	7478316	0	+	0.515464	(0.515,0.57]	chr22	762710	10	INTRON	INTRON	DGCR8	ENSG00000128191.16	ENST00000383024.6:ENST00000351989.8:ENST00000495826.5:ENST00000407755.1:ENST00000498171.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	81	2	3.16455	3.53899	3.91343	3.23741e-4	1.28574e-4	0.0159645	0.0103138
chr20	31690780	31690880	7325051	0	-	0.36	(0.35,0.378]	chr20	745996	58	INTRON	INTRON	BCL2L1	ENSG00000171552.14	ENST00000376055.9:ENST00000376062.6:ENST00000307677.5:ENST00000420488.6:ENST00000439267.2:ENST00000678563.1:ENST00000456404.6:ENST00000676942.1:ENST00000676582.1:ENST00000434194.2:ENST00000677194.1:ENST00000678671.1:ENST00000677494.1:ENST00000422920.2:ENST00000450273.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	45	2	1.9755	3.5388800000000002	5.10226	0.0398617	0.00327038	0.161534	0.0508595
chr21	10445738	10445838	7368452	0	+	0.46	(0.44,0.476]	chr21	751975	305	INTRON	INTRON	BAGE2	ENSG00000187172.15	ENST00000474011.5:ENST00000470054.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	3	94	2	3.12298	3.53886	3.95474	4.66209e-4	1.54083e-4	0.0195589	0.0113252
chr14	103444048	103444148	5826222	0	+	0.25	[0,0.28]	chr14	552839	21	INTRON	INTRON	MARK3	ENSG00000075413.19	ENST00000678179.1:ENST00000676838.1:ENST00000677348.1:ENST00000677404.1:ENST00000676694.1:ENST00000676938.1:ENST00000678619.1:ENST00000676897.1:ENST00000677214.1:ENST00000677942.1:ENST00000676830.1:ENST00000678999.1:ENST00000677228.1:ENST00000556744.2:ENST00000677104.1:ENST00000679330.1:ENST00000560417.6:ENST00000440884.7:ENST00000676475.1:ENST00000677035.1:ENST00000678022.1:ENST00000677560.1:ENST00000561314.6:ENST00000429436.7:ENST00000677118.1:ENST00000676564.1:ENST00000678169.1:ENST00000678175.1:ENST00000678897.1:ENST00000678278.1:ENST00000676645.1:ENST00000677829.1:ENST00000678302.1:ENST00000677133.1:ENST00000561164.2:ENST00000558223.6:ENST00000559328.6:ENST00000678207.1:ENST00000677360.1:ENST00000676905.1:ENST00000678343.1:ENST00000677347.1:ENST00000678071.1:ENST00000677432.1:ENST00000678237.1:ENST00000677604.1:ENST00000676518.1:ENST00000677051.1:ENST00000677857.1:ENST00000677869.1:ENST00000678423.1:ENST00000560603.6:ENST00000416682.6:ENST00000303622.13:ENST00000216288.11:ENST00000679105.1:ENST00000553942.5:ENST00000335102.9:ENST00000561225.1:ENST00000678091.1:ENST00000561071.5:ENST00000558698.5:ENST00000559268.5:ENST00000560731.5:ENST00000676745.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	44	2	2.44242	3.538825	4.63523	0.0491024	0.0139836	0.155269	0.10247
chr5	78290949	78291049	2651110	0	-	0.23	[0,0.28]	chr5	251795	181	INTRON	INTRON	AP3B1	ENSG00000132842.15	ENST00000519295.6:ENST00000255194.11:ENST00000695515.1:ENST00000695454.1:ENST00000695511.1:ENST00000695453.1:ENST00000695455.1:ENST00000695513.1:ENST00000695488.1:ENST00000695450.1:ENST00000695507.1:ENST00000695512.1:ENST00000695510.1:ENST00000695451.1:ENST00000695447.1:ENST00000695505.1:ENST00000519888.6:ENST00000695514.1:ENST00000517940.2:ENST00000517561.2:ENST00000695452.1:ENST00000695449.1:ENST00000695540.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	44	2	2.44242	3.538825	4.63523	0.0491024	0.0139836	0.155269	0.10247
chr14	103691072	103691170	5828285	0	+	0.5	(0.476,0.515]	chr14	553132	31	INTRON	INTRON	KLC1	ENSG00000126214.22	ENST00000348520.10:ENST00000334553.11:ENST00000555836.5:ENST00000347839.10:ENST00000452929.6:ENST00000554280.5:ENST00000557450.5:ENST00000554228.5:ENST00000634686.1:ENST00000246489.11:ENST00000537046.6:ENST00000535194.2:ENST00000538504.6:ENST00000557143.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	32	2	2.38442	3.53881	4.6932	0.0417472	0.00753088	0.161736	0.074841
chr16	1508116	1508216	6274490	0	+	0.51	(0.476,0.515]	chr16	599367	4	SS5_PROX	SS5_PROX:INTRON	TELO2	ENSG00000100726.15	ENST00000262319.11:ENST00000568240.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	32	2	2.38442	3.53881	4.6932	0.0417472	0.00753088	0.161736	0.074841
chr17	78695216	78695312	6844947	0	-	0.479167	(0.476,0.515]	chr17	677272	24	INTRON	INTRON	CYTH1	ENSG00000108669.17	ENST00000589296.5:ENST00000361101.8:ENST00000446868.8:ENST00000591455.5:ENST00000589297.5:ENST00000585509.5:ENST00000591574.5:ENST00000590775.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	32	2	2.38442	3.53881	4.6932	0.0417472	0.00753088	0.161736	0.074841
chr19	18838681	18838781	7033387	0	+	0.48	(0.476,0.515]	chr19	700970	50	INTRON	INTRON	UPF1	ENSG00000005007.13	ENST00000262803.10:ENST00000599848.5:ENST00000601981.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	32	2	2.38442	3.53881	4.6932	0.0417472	0.00753088	0.161736	0.074841
chr5	36992743	36992842	2339602	0	+	0.515152	(0.476,0.515]	chr5	226004	61	INTRON	INTRON	NIPBL	ENSG00000164190.19	ENST00000282516.13:ENST00000448238.2:ENST00000652901.1:ENST00000504430.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	32	2	2.38442	3.53881	4.6932	0.0417472	0.00753088	0.161736	0.074841
chr5	176477087	176477187	2552460	0	+	0.48	(0.476,0.515]	chr5	243670	230	INTRON	INTRON	FAF2	ENSG00000113194.13	ENST00000510730.5:ENST00000261942.7:ENST00000510446.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	32	2	2.38442	3.53881	4.6932	0.0417472	0.00753088	0.161736	0.074841
chr1	26241512	26241610	49559	0	+	0.438776	(0.408,0.44]	chr1	6199	13	INTRON	INTRON	CEP85	ENSG00000130695.16	ENST00000451429.8:ENST00000640292.2:ENST00000252992.8	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	2.74518	3.53878	4.33238	0.0218901	0.0152229	0.11491	0.108535
chr1	197772767	197772867	616920	0	-	0.44	(0.408,0.44]	chr1	72896	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	DENND1B	ENSG00000213047.13	ENST00000620048.6:ENST00000294737.11:ENST00000367396.7:ENST00000235453.8:ENST00000422998.1:ENST00000468589.5:ENST00000495550.5:ENST00000477581.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	32	2	2.74518	3.53878	4.33238	0.0218901	0.0152229	0.11491	0.108535
chr13	113186346	113186444	5651826	0	-	0.428571	(0.408,0.44]	chr13	538587	9	EXON_LNCRNA	EXON_LNCRNA:INTRON	PCID2	ENSG00000126226.22	ENST00000337344.9:ENST00000622406.4:ENST00000375479.6:ENST00000375477.5:ENST00000246505.9:ENST00000375459.5:ENST00000493650.5:ENST00000375457.2:ENST00000473462.5:ENST00000475433.5:ENST00000480971.5:ENST00000484641.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	32	2	2.74518	3.53878	4.33238	0.0218901	0.0152229	0.11491	0.108535
chr2	98474076	98474176	833171	0	+	0.43	(0.408,0.44]	chr2	93413	286	INTRON	INTRON	INPP4A	ENSG00000040933.16	ENST00000409016.8:ENST00000409851.8:ENST00000074304.9:ENST00000409463.5:ENST00000409540.7	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	2.74518	3.53878	4.33238	0.0218901	0.0152229	0.11491	0.108535
chr7	24847179	24847278	3504479	0	-	0.414141	(0.408,0.44]	chr7	327047	44	INTRON	INTRON	OSBPL3	ENSG00000070882.13	ENST00000313367.7:ENST00000409863.5:ENST00000396431.5:ENST00000409452.5:ENST00000409759.5:ENST00000409555.5:ENST00000396429.5:ENST00000409069.5:ENST00000461835.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	32	2	2.74518	3.53878	4.33238	0.0218901	0.0152229	0.11491	0.108535
chr7	101932435	101932528	3367517	0	+	0.408602	(0.408,0.44]	chr7	315226	2	EXON_LNCRNA	EXON_LNCRNA:INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000497815.5:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000558469.5:ENST00000560541.5:ENST00000558836.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	192	2	3.10759	3.53876	3.96993	1.27945e-5	7.22476e-6	0.00265999	0.00201824
chr12	31977104	31977203	5106781	0	+	0.383838	(0.378,0.408]	chr12	482333	64	INTRON	INTRON	RESF1	ENSG00000174718.12	ENST00000541981.5:ENST00000540924.5:ENST00000312561.9:ENST00000535596.5:ENST00000397578.7:ENST00000381054.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	73	2	3.47322	3.538755	3.60429	0.00147803	5.71664e-4	0.0348908	0.0217398
chr9	130706695	130706795	4213847	0	+	0.46	(0.44,0.476]	chr9	386420	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	EXOSC2	ENSG00000130713.17	ENST00000691284.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	3	59	2	2.2193	3.538735	4.85817	0.00896114	0.00223254	0.0800073	0.0435144
chr9	132296528	132296614	4366571	0	-	0.418605	(0.408,0.44]	chr9	401439	1	SS5_PROX	SS5_PROX:INTRON	SETX	ENSG00000107290.14	ENST00000224140.6:ENST00000436441.5	protein_coding	protein_coding	protein_coding	protein_coding	2	47	2	2.21857	3.538645	4.85872	0.0209591	0.00221911	0.112046	0.0435144
chr20	31770871	31770971	7253981	0	+	0.32	(0.28,0.32]	chr20	736756	4	SS5_PROX	SS5_PROX:INTRON	TPX2	ENSG00000088325.16	ENST00000340513.4:ENST00000300403.11	protein_coding	protein_coding	protein_coding	protein_coding	1	37	2	2.73945	3.53855	4.33765	0.039714	0.017681	0.143072	0.11319
chr9	4809683	4809783	4095033	0	+	0.32	(0.28,0.32]	chr9	373155	161	INTRON	INTRON	RCL1	ENSG00000120158.12	ENST00000381750.9:ENST00000381732.3:ENST00000442869.5:ENST00000473230.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	37	2	2.73945	3.53855	4.33765	0.039714	0.017681	0.143072	0.11319
chr7	152193111	152193210	3678817	0	-	0.414141	(0.408,0.44]	chr7	341494	49	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000360104.8:ENST00000262189.11:ENST00000683200.1:ENST00000682283.1:ENST00000473186.5:ENST00000679882.1:ENST00000680969.1:ENST00000681033.1:ENST00000682176.1:ENST00000683159.1:ENST00000679645.1:ENST00000681635.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	95	2	2.92033	3.53838	4.15643	0.00162151	3.06341e-5	0.0367655	0.00441979
chr1	26713323	26713422	51344	0	+	0.40404	(0.378,0.408]	chr1	6542	154	INTRON	INTRON	ARID1A	ENSG00000117713.21	ENST00000430799.7:ENST00000324856.13:ENST00000637465.1:ENST00000457599.6	protein_coding	protein_coding	protein_coding	protein_coding	13	363	2	2.81297	3.5383	4.26363	2.90097e-5	7.25435e-9	0.00447916	2.8962e-5
chr1	8610871	8610970	371710	0	-	0.434343	(0.408,0.44]	chr1	43521	202	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000400907.6:ENST00000656437.1:ENST00000659924.1:ENST00000480342.5:ENST00000514428.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	32	2	2.3975	3.53822	4.67894	0.040266	0.0087648	0.161534	0.0788605
chr12	53007496	53007596	5141423	0	+	0.41	(0.408,0.44]	chr12	484964	6	INTRON	INTRON	EIF4B	ENSG00000063046.18	ENST00000551527.5:ENST00000549077.5:ENST00000549645.5:ENST00000262056.14:ENST00000420463.7:ENST00000551002.5:ENST00000416762.7:ENST00000550704.5:ENST00000549481.5:ENST00000552490.5:ENST00000550390.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	32	2	2.3975	3.53822	4.67894	0.040266	0.0087648	0.161534	0.0788605
chr17	37163146	37163246	6760546	0	-	0.42	(0.408,0.44]	chr17	664702	7	INTRON	INTRON	ACACA	ENSG00000278540.5	ENST00000616317.5:ENST00000614428.4:ENST00000612895.4:ENST00000619546.4:ENST00000617649.4:ENST00000618575.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	32	2	2.3975	3.53822	4.67894	0.040266	0.0087648	0.161534	0.0788605
chr18	3002134	3002234	6944990	0	-	0.41	(0.408,0.44]	chr18	686840	194	INTRON	INTRON	LPIN2	ENSG00000101577.10	ENST00000261596.8:ENST00000677752.1	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	2.3975	3.53822	4.67894	0.040266	0.0087648	0.161534	0.0788605
chr2	97520532	97520631	1183528	0	-	0.434343	(0.408,0.44]	chr2	126902	42	INTRON	INTRON	ANKRD36B	ENSG00000196912.13	ENST00000359901.9:ENST00000258459.12	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	2.3975	3.53822	4.67894	0.040266	0.0087648	0.161534	0.0788605
chr9	95218828	95218927	4291046	0	-	0.414141	(0.408,0.44]	chr9	394734	124	INTRON	INTRON	FANCC	ENSG00000158169.14	ENST00000289081.8:ENST00000375305.6:ENST00000649334.1:ENST00000490972.7:ENST00000649701.1:ENST00000696261.1:ENST00000636777.1:ENST00000474949.1:ENST00000647778.1:ENST00000433829.1:ENST00000647882.1:ENST00000649519.1:ENST00000650176.1:ENST00000648415.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	32	2	2.3975	3.53822	4.67894	0.040266	0.0087648	0.161534	0.0788605
chr3	170148214	170148311	1861492	0	-	0.443299	(0.44,0.476]	chr3	186647	11	EXON_MRNA	EXON_MRNA:INTRON	PHC3	ENSG00000173889.16	ENST00000495893.7:ENST00000494943.5:ENST00000467570.5:ENST00000484931.5:ENST00000479467.5:ENST00000466189.5:ENST00000475729.5:ENST00000474275.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	52	2	2.1762	3.5381	4.9	0.0092251	0.00423315	0.0855292	0.0572185
chr12	112038928	112039028	5414698	0	-	0.38	(0.378,0.408]	chr12	517126	3	SS5_PROX	SS5_PROX:INTRON	NAA25	ENSG00000111300.10	ENST00000261745.9:ENST00000552527.5:ENST00000549711.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	118	2	2.73774	3.53796	4.33818	0.00113735	1.11892e-5	0.0307766	0.00247392
chr21	44777717	44777817	7468484	0	-	0.56	(0.515,0.57]	chr21	761154	3	SS3_PROX	SS3_PROX:INTRON	UBE2G2	ENSG00000184787.19	ENST00000345496.7:ENST00000497630.5:ENST00000477954.5:ENST00000491513.5:ENST00000330942.9:ENST00000478200.1:ENST00000497664.5:ENST00000462569.5:ENST00000490450.5:ENST00000496395.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	39	2	2.03361	3.5379300000000002	5.04225	0.0325854	0.00131841	0.145164	0.0331539
chr7	23441893	23441993	3503381	0	-	0.52	(0.515,0.57]	chr7	326910	107	INTRON	INTRON	IGF2BP3	ENSG00000136231.14	ENST00000258729.8:ENST00000421467.6:ENST00000468263.5:ENST00000491719.5:ENST00000476938.5:ENST00000468005.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	39	2	2.03361	3.5379300000000002	5.04225	0.0325854	0.00131841	0.145164	0.0331539
chr2	27399925	27400025	1087204	0	-	0.24	[0,0.28]	chr2	116461	124	INTRON	INTRON	PPM1G	ENSG00000115241.11	ENST00000472077.1:ENST00000344034.5:ENST00000484925.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	40	2	2.69187	3.53787	4.38387	0.0501911	0.0221271	0.156383	0.123903
chr4	103185309	103185409	2215475	0	-	0.24	[0,0.28]	chr4	217158	1	SS5_PROX	SS5_PROX:INTRON	CENPE	ENSG00000138778.14	ENST00000380026.8:ENST00000265148.9	protein_coding	protein_coding	protein_coding	protein_coding	1	40	2	2.69187	3.53787	4.38387	0.0501911	0.0221271	0.156383	0.123903
chr7	124921831	124921930	3633697	0	-	0.252525	[0,0.28]	chr7	337734	58	INTRON	INTRON	POT1	ENSG00000128513.16	ENST00000430927.6:ENST00000357628.8:ENST00000393329.5:ENST00000653274.1:ENST00000661898.1:ENST00000664330.1:ENST00000657892.1:ENST00000662531.1:ENST00000653241.1:ENST00000653892.1:ENST00000664366.1:ENST00000655761.1:ENST00000668382.1:ENST00000654766.1:ENST00000657333.1:ENST00000653819.1:ENST00000609106.5:ENST00000446993.6:ENST00000429326.6:ENST00000609702.5:ENST00000669195.1:ENST00000608437.5:ENST00000608261.5:ENST00000461288.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	40	2	2.69187	3.53787	4.38387	0.0501911	0.0221271	0.156383	0.123903
chr8	63182866	63182965	3773132	0	+	0.212121	[0,0.28]	chr8	349936	71	INTRON	INTRON	YTHDF3	ENSG00000185728.17	ENST00000617200.1:ENST00000623280.3:ENST00000539294.6:ENST00000621957.4:ENST00000517371.5:ENST00000615676.1:ENST00000621413.4:ENST00000612880.4:ENST00000617952.4:ENST00000621890.4:ENST00000619337.4:ENST00000613853.4:ENST00000621820.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	40	2	2.69187	3.53787	4.38387	0.0501911	0.0221271	0.156383	0.123903
chr1	95142120	95142218	166815	0	+	0.306122	(0.28,0.32]	chr1	18106	10	INTRON	INTRON	TLCD4:TLCD4-RWDD3	ENSG00000152078.10:ENSG00000271092.5	ENST00000370203.9:ENST00000456991.5:ENST00000604534.5:ENST00000455656.1:ENST00000463375.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	161	2	3.14457	3.537865	3.93116	9.588e-4	8.60656e-6	0.0282401	0.00211106
chr1	205093281	205093380	622132	0	-	0.454545	(0.44,0.476]	chr1	73958	41	INTRON	INTRON	RBBP5	ENSG00000117222.14	ENST00000367164.1:ENST00000264515.11	protein_coding	protein_coding	protein_coding	protein_coding	2	43	2	2.39003	3.5378350000000003	4.68564	0.0106488	0.00816201	0.0915714	0.0766625
chr5	133087903	133088003	2488369	0	+	0.43	(0.408,0.44]	chr5	237515	1	SS3_PROX	SS3_PROX:INTRON	HSPA4	ENSG00000170606.16	ENST00000304858.7:ENST00000504328.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	45	2	2.64829	3.5377099999999997	4.42713	0.0173083	0.00400062	0.104099	0.057767
chr10	48363112	48363212	4431554	0	+	0.48	(0.476,0.515]	chr10	408569	368	INTRON	INTRON	MAPK8	ENSG00000107643.17	ENST00000395611.7:ENST00000432379.5:ENST00000374189.6:ENST00000429041.6:ENST00000374179.8:ENST00000426557.5:ENST00000476134.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	45	2	2.63396	3.53762	4.44128	0.0151924	0.00426634	0.0994339	0.0596808
chr7	107178025	107178124	3378448	0	+	0.333333	(0.32,0.35]	chr7	316324	29	INTRON	INTRON	HBP1	ENSG00000105856.14	ENST00000468410.5:ENST00000478930.5:ENST00000464009.1:ENST00000222574.9:ENST00000468401.1:ENST00000497535.5:ENST00000485846.5	protein_coding	protein_coding	protein_coding	protein_coding	4	70	2	2.24224	3.537555	4.83287	0.0095071	0.00393422	0.0817766	0.0572563
chr5	75361627	75361726	2391110	0	+	0.282828	(0.28,0.32]	chr5	230991	14	UTR3	UTR3:EXON_MRNA	HMGCR	ENSG00000113161.17	ENST00000679456.1:ENST00000680160.1:ENST00000287936.9:ENST00000681567.1:ENST00000680940.1:ENST00000681271.1:ENST00000681410.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	60	2	2.02902	3.537405	5.04579	0.0174423	0.00714672	0.11269	0.0723634
chr11	64213035	64213133	4802313	0	+	0.44898	(0.44,0.476]	chr11	445346	9	INTRON	INTRON	FERMT3	ENSG00000149781.13	ENST00000544997.5:ENST00000345728.10:ENST00000279227.9:ENST00000541326.5:ENST00000546255.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	43	2	1.93084	3.5373099999999997	5.14378	0.0443175	0.00184943	0.162302	0.0388609
chr10	74407977	74408077	4458343	0	+	0.46	(0.44,0.476]	chr10	411580	90	INTRON	INTRON	ADK	ENSG00000156110.15	ENST00000672429.1:ENST00000539909.6:ENST00000286621.7:ENST00000673352.1:ENST00000673310.1:ENST00000672920.1:ENST00000672394.1:ENST00000372734.5:ENST00000673027.1:ENST00000541550.6:ENST00000672604.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	47	2	2.29126	3.537095	4.78293	0.0165638	0.00292033	0.102621	0.0494641
chr19	18851429	18851529	7033523	0	+	0.38	(0.378,0.408]	chr19	701004	3	SS5_PROX	SS5_PROX:INTRON	UPF1	ENSG00000005007.13	ENST00000262803.10:ENST00000599848.5:ENST00000600868.5:ENST00000600012.5:ENST00000598209.5:ENST00000600310.5:ENST00000598471.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	33	2	2.85854	3.5370850000000003	4.21563	0.0315429	0.0107837	0.13151	0.0920575
chr2	44184232	44184332	764710	0	+	0.4	(0.378,0.408]	chr2	86683	146	INTRON	INTRON	PPM1B	ENSG00000138032.21	ENST00000419807.5:ENST00000282412.9:ENST00000378540.8:ENST00000378551.6:ENST00000409432.7:ENST00000409486.6:ENST00000345249.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	33	2	2.85854	3.5370850000000003	4.21563	0.0315429	0.0107837	0.13151	0.0920575
chr2	241337890	241337990	1053849	0	+	0.39	(0.378,0.408]	chr2	112246	1	SS5_PROX	SS5_PROX:INTRON	SEPTIN2	ENSG00000168385.18	ENST00000391973.6:ENST00000428282.5:ENST00000360051.7:ENST00000616972.4:ENST00000401990.5:ENST00000407971.5:ENST00000494824.5:ENST00000466211.5:ENST00000391971.7:ENST00000402092.6:ENST00000464128.5:ENST00000484167.5:ENST00000421717.1:ENST00000481500.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	33	2	2.85854	3.5370850000000003	4.21563	0.0315429	0.0107837	0.13151	0.0920575
chr21	33340003	33340102	7396437	0	+	0.393939	(0.378,0.408]	chr21	753384	40	INTRON	INTRON	IFNAR1	ENSG00000142166.13	ENST00000652450.1:ENST00000652654.1:ENST00000270139.8:ENST00000442071.2:ENST00000652513.1:ENST00000652601.1:ENST00000651609.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	33	2	2.85854	3.5370850000000003	4.21563	0.0315429	0.0107837	0.13151	0.0920575
chr6	53083715	53083815	2877741	0	+	0.39	(0.378,0.408]	chr6	273154	7	INTRON	INTRON	FBXO9	ENSG00000112146.17	ENST00000370939.7:ENST00000323557.12:ENST00000244426.10:ENST00000480463.6:ENST00000484812.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	33	2	2.85854	3.5370850000000003	4.21563	0.0315429	0.0107837	0.13151	0.0920575
chr7	157145830	157145930	3454008	0	+	0.39	(0.378,0.408]	chr7	322895	61	INTRON	INTRON	UBE3C	ENSG00000009335.18	ENST00000611269.4:ENST00000348165.10:ENST00000389103.4:ENST00000430750.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	33	2	2.85854	3.5370850000000003	4.21563	0.0315429	0.0107837	0.13151	0.0920575
chr1	35350422	35350521	69107	0	+	0.474747	(0.44,0.476]	chr1	8729	247	INTRON	INTRON	ZMYM4	ENSG00000146463.12	ENST00000314607.11:ENST00000441447.1	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	2.74063	3.537045	4.33346	0.0176095	0.0120349	0.105143	0.0962115
chr1	243269300	243269397	344993	0	+	0.474227	(0.44,0.476]	chr1	40189	1	SS5_PROX	SS5_PROX:INTRON	SDCCAG8	ENSG00000054282.16	ENST00000490065.5:ENST00000366541.8:ENST00000491888.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	35	2	2.74063	3.537045	4.33346	0.0176095	0.0120349	0.105143	0.0962115
chr12	120692597	120692696	5236287	0	+	0.444444	(0.44,0.476]	chr12	496968	47	INTRON	INTRON	MLEC	ENSG00000110917.8	ENST00000228506.8:ENST00000412616.2	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	2.74063	3.537045	4.33346	0.0176095	0.0120349	0.105143	0.0962115
chr16	3704119	3704219	6434341	0	-	0.47	(0.44,0.476]	chr16	619372	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	TRAP1	ENSG00000126602.11	ENST00000246957.10:ENST00000538171.5:ENST00000571804.5:ENST00000574941.5:ENST00000576106.5:ENST00000571011.1:ENST00000570403.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	35	2	2.74063	3.537045	4.33346	0.0176095	0.0120349	0.105143	0.0962115
chr17	38851942	38852036	6765120	0	-	0.446809	(0.44,0.476]	chr17	665397	4	EXON_MRNA	EXON_MRNA:INTRON	RPL23	ENSG00000125691.14	ENST00000479035.7:ENST00000394333.5:ENST00000394332.5:ENST00000584912.5:ENST00000245857.9:ENST00000577407.5:ENST00000470646.1:ENST00000378096.3:ENST00000577760.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	35	2	2.74063	3.537045	4.33346	0.0176095	0.0120349	0.105143	0.0962115
chr22	44048330	44048429	7528587	0	+	0.464646	(0.44,0.476]	chr22	769749	80	INTRON	INTRON	PARVB	ENSG00000188677.15	ENST00000406477.7:ENST00000338758.12:ENST00000402876.3:ENST00000619710.4:ENST00000444029.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	35	2	2.74063	3.537045	4.33346	0.0176095	0.0120349	0.105143	0.0962115
chr7	65390393	65390493	3322619	0	+	0.45	(0.44,0.476]	chr7	308935	11	INTRON	INTRON	ZNF92	ENSG00000146757.14	ENST00000357512.3:ENST00000431504.1:ENST00000328747.12:ENST00000450302.2	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	2.74063	3.537045	4.33346	0.0176095	0.0120349	0.105143	0.0962115
chr20	62325880	62325959	7361243	0	-	0.43038	(0.408,0.44]	chr20	750910	4	SS3_PROX	SS3_PROX:INTRON	LAMA5	ENSG00000130702.15	ENST00000252999.7:ENST00000497363.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	130	2	3.03537	3.536975	4.03858	1.05823e-4	5.12176e-5	0.00920724	0.00585477
chr17	62523735	62523835	6653335	0	+	0.4	(0.378,0.408]	chr17	649339	1	SS3_PROX	SS3_PROX:INTRON	TLK2	ENSG00000146872.19	ENST00000582809.5:ENST00000684213.1:ENST00000583843.5:ENST00000582195.6:ENST00000682085.1:ENST00000580705.5:ENST00000346027.10:ENST00000326270.13:ENST00000682203.1:ENST00000343388.11:ENST00000683536.1:ENST00000684440.1:ENST00000684772.1:ENST00000682274.1:ENST00000682827.1:ENST00000682075.1:ENST00000683104.1:ENST00000684012.1:ENST00000581041.5:ENST00000684553.1:ENST00000683737.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	44	2	2.41037	3.536875	4.66338	0.0103469	0.0100185	0.0880217	0.0850389
chr10	102162928	102163022	4512627	0	+	0.297872	(0.28,0.32]	chr10	415675	8	UTR3	UTR3:EXON_MRNA:INTRON	NOLC1	ENSG00000166197.17	ENST00000405356.5:ENST00000605788.6:ENST00000603946.5:ENST00000370007.5:ENST00000477977.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	150	2	2.53475	3.536785	4.53882	0.00257029	1.93674e-5	0.0466761	0.00356815
chr12	57751797	57751877	5339780	0	-	0.55	(0.515,0.57]	chr12	510937	2	UTR5	UTR5:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CDK4	ENSG00000135446.17	ENST00000312990.10:ENST00000257904.11:ENST00000549606.5:ENST00000553237.5:ENST00000546489.5:ENST00000551888.5:ENST00000547281.5:ENST00000550419.5:ENST00000551800.5:ENST00000552254.5:ENST00000551706.1:ENST00000552388.1:ENST00000552862.1:ENST00000547853.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	32	2	2.90311	3.53674	4.17037	0.0139194	0.0094233	0.10247	0.0817766
chr13	52333504	52333582	5598927	0	-	0.551282	(0.515,0.57]	chr13	535287	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TPTE2P2	ENSG00000272281.6	ENST00000605936.6:ENST00000606711.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	1	32	2	2.90311	3.53674	4.17037	0.0139194	0.0094233	0.10247	0.0817766
chr1	28270033	28270128	55621	0	+	0.557895	(0.515,0.57]	chr1	7202	4	INTRON	INTRON	SESN2	ENSG00000130766.5	ENST00000253063.4	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	2.65834	3.53666	4.41498	0.0187418	0.0106866	0.117523	0.0861859
chr12	50982701	50982801	5324321	0	-	0.54	(0.515,0.57]	chr12	507638	5	INTRON	INTRON	SLC11A2	ENSG00000110911.17	ENST00000551215.5:ENST00000547688.7:ENST00000644495.1:ENST00000643884.1:ENST00000546636.5:ENST00000547198.5:ENST00000646264.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	29	2	2.65834	3.53666	4.41498	0.0187418	0.0106866	0.117523	0.0861859
chr12	76060844	76060909	5369979	0	-	0.553846	(0.515,0.57]	chr12	512303	2	SS5_PROX	SS5_PROX:INTRON	NAP1L1	ENSG00000187109.15	ENST00000618691.5:ENST00000552056.5:ENST00000393263.7:ENST00000431879.7:ENST00000552147.5:ENST00000547773.5:ENST00000544816.5:ENST00000542344.5:ENST00000535020.6:ENST00000549596.5:ENST00000552342.5:ENST00000547529.6:ENST00000548044.5:ENST00000550934.5:ENST00000551992.5:ENST00000548273.5:ENST00000551600.5:ENST00000547704.5:ENST00000551524.5:ENST00000549988.5:ENST00000547479.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	29	2	2.65834	3.53666	4.41498	0.0187418	0.0106866	0.117523	0.0861859
chr22	20983322	20983422	7480897	0	+	0.52	(0.515,0.57]	chr22	763111	2	SS5_PROX	SS5_PROX:INTRON	LZTR1	ENSG00000099949.21	ENST00000414985.5:ENST00000646124.2:ENST00000493460.2:ENST00000443265.5:ENST00000645935.1:ENST00000644435.1:ENST00000642151.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	29	2	2.65834	3.53666	4.41498	0.0187418	0.0106866	0.117523	0.0861859
chr3	47184590	47184690	1418285	0	+	0.53	(0.515,0.57]	chr3	148980	72	INTRON	INTRON	KIF9-AS1	ENSG00000227398.5	ENST00000429315.3	lncRNA	lncRNA	lncRNA	lncRNA	1	29	2	2.65834	3.53666	4.41498	0.0187418	0.0106866	0.117523	0.0861859
chr6	131661504	131661603	2960430	0	+	0.535354	(0.515,0.57]	chr6	278298	27	INTRON	INTRON	ENPP3	ENSG00000154269.15	ENST00000427707.5:ENST00000414305.5:ENST00000357639.8:ENST00000358229.6:ENST00000470930.5:ENST00000494023.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	29	2	2.65834	3.53666	4.41498	0.0187418	0.0106866	0.117523	0.0861859
chr7	101931048	101931148	3367503	0	+	0.54	(0.515,0.57]	chr7	315225	145	INTRON	INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000497815.5:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000558469.5:ENST00000560541.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	29	2	2.65834	3.53666	4.41498	0.0187418	0.0106866	0.117523	0.0861859
chr1	15695490	15695589	34124	0	+	0.525253	(0.515,0.57]	chr1	4144	105	INTRON	INTRON	PLEKHM2	ENSG00000116786.13	ENST00000375799.8:ENST00000375793.2:ENST00000462455.1:ENST00000642363.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	29	2	2.56306	3.53653	4.51	0.0247751	0.00809449	0.131869	0.0766625
chr1	236852637	236852737	343086	0	+	0.52	(0.515,0.57]	chr1	39914	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MTR	ENSG00000116984.15	ENST00000680454.1:ENST00000366577.10:ENST00000674797.2:ENST00000679569.1:ENST00000650888.1:ENST00000463959.1:ENST00000535889.6:ENST00000651455.1:ENST00000681102.1:ENST00000679842.1:ENST00000681177.1:ENST00000681937.1:ENST00000366576.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	29	2	2.56306	3.53653	4.51	0.0247751	0.00809449	0.131869	0.0766625
chr12	111535402	111535502	5412587	0	-	0.52	(0.515,0.57]	chr12	516916	97	INTRON	INTRON	ATXN2	ENSG00000204842.18	ENST00000642389.2:ENST00000608853.5:ENST00000672613.1:ENST00000673436.1:ENST00000643669.2:ENST00000616825.4:ENST00000389153.10:ENST00000550104.5:ENST00000483311.6:ENST00000672335.1:ENST00000492467.6:ENST00000673557.1:ENST00000673283.1:ENST00000673449.1:ENST00000535949.5:ENST00000542287.6:ENST00000644883.1:ENST00000647305.1:ENST00000671792.1:ENST00000392645.6:ENST00000672105.1:ENST00000471866.5:ENST00000549455.1:ENST00000548492.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	29	2	2.56306	3.53653	4.51	0.0247751	0.00809449	0.131869	0.0766625
chr13	95085187	95085287	5637690	0	-	0.54	(0.515,0.57]	chr13	537045	15	INTRON	INTRON	ABCC4	ENSG00000125257.16	ENST00000645237.2:ENST00000643051.1:ENST00000643842.1:ENST00000646439.1:ENST00000644880.1:ENST00000643816.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	29	2	2.56306	3.53653	4.51	0.0247751	0.00809449	0.131869	0.0766625
chr4	74164842	74164942	1972371	0	+	0.54	(0.515,0.57]	chr4	197724	27	INTRON	INTRON	MTHFD2L	ENSG00000163738.19	ENST00000429519.5:ENST00000429335.5:ENST00000433372.5:ENST00000423607.6:ENST00000395759.6:ENST00000325278.7:ENST00000359107.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	29	2	2.56306	3.53653	4.51	0.0247751	0.00809449	0.131869	0.0766625
chr6	7130460	7130560	2798590	0	+	0.52	(0.515,0.57]	chr6	263723	214	INTRON	INTRON	RREB1	ENSG00000124782.21	ENST00000379933.7:ENST00000491191.5:ENST00000471433.5:ENST00000379938.7:ENST00000467782.5:ENST00000349384.10:ENST00000334984.10:ENST00000475946.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	29	2	2.56306	3.53653	4.51	0.0247751	0.00809449	0.131869	0.0766625
chr6	57183004	57183095	2878994	0	+	0.527473	(0.515,0.57]	chr6	273341	5	INTRON	INTRON	BAG2	ENSG00000112208.11	ENST00000370693.5	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	2.56306	3.53653	4.51	0.0247751	0.00809449	0.131869	0.0766625
chr7	74702898	74702996	3335706	0	+	0.530612	(0.515,0.57]	chr7	310373	19	INTRON	INTRON	GTF2I	ENSG00000263001.8	ENST00000650807.1:ENST00000690345.1:ENST00000573035.6:ENST00000614986.4:ENST00000620879.4:ENST00000621734.4:ENST00000443166.5	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	2.56306	3.53653	4.51	0.0247751	0.00809449	0.131869	0.0766625
chr17	77157445	77157545	6678801	0	+	0.36	(0.35,0.378]	chr17	652351	120	INTRON	INTRON	SEC14L1	ENSG00000129657.16	ENST00000392476.6:ENST00000589827.5:ENST00000430767.8:ENST00000586429.5:ENST00000586390.5:ENST00000585618.5:ENST00000436233.9:ENST00000443798.8:ENST00000587820.1:ENST00000591786.5:ENST00000591437.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	36	2	2.32443	3.5365149999999996	4.7486	0.0544216	0.00418965	0.164972	0.0591344
chr9	128954790	128954886	4207921	0	+	0.354167	(0.35,0.378]	chr9	385258	16	INTRON	INTRON	NUP188	ENSG00000095319.14	ENST00000372577.2:ENST00000491990.5:ENST00000550219.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	36	2	2.32443	3.5365149999999996	4.7486	0.0544216	0.00418965	0.164972	0.0591344
chr1	110959158	110959257	522189	0	-	0.282828	(0.28,0.32]	chr1	61360	60	INTRON	INTRON	LRIF1	ENSG00000121931.16	ENST00000369763.5:ENST00000485275.2	protein_coding	protein_coding	protein_coding	protein_coding	2	88	2	3.49198	3.5364899999999997	3.581	0.00195595	8.63544e-4	0.0400756	0.0266494
chr3	51492134	51492234	1697202	0	-	0.38	(0.378,0.408]	chr3	174424	79	INTRON	INTRON	DCAF1	ENSG00000145041.16	ENST00000504652.5:ENST00000423656.5:ENST00000684031.1	protein_coding	protein_coding	protein_coding	protein_coding	2	44	2	1.89621	3.53624	5.17627	0.0488044	0.00208234	0.173377	0.0411801
chr10	3072610	3072710	4381577	0	+	0.4	(0.378,0.408]	chr10	404053	19	INTRON	INTRON	PFKP	ENSG00000067057.18	ENST00000607886.5:ENST00000381125.9:ENST00000381075.7:ENST00000678206.1:ENST00000677351.1:ENST00000678089.1:ENST00000676796.1:ENST00000421751.1:ENST00000407806.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	33	2	2.26252	3.5361000000000002	4.80968	0.056222	0.00679828	0.18407	0.0711802
chr13	21392154	21392254	5556810	0	-	0.4	(0.378,0.408]	chr13	531133	3	SS3_PROX	SS3_PROX:INTRON	ZDHHC20	ENSG00000180776.16	ENST00000400590.8:ENST00000542645.5:ENST00000382466.7:ENST00000320220.13:ENST00000494731.5:ENST00000415724.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	33	2	2.26252	3.5361000000000002	4.80968	0.056222	0.00679828	0.18407	0.0711802
chr14	73104175	73104273	5784550	0	+	0.408163	(0.378,0.408]	chr14	547878	3	INTRON	INTRON	RBM25	ENSG00000119707.14	ENST00000527432.5:ENST00000261973.12:ENST00000532683.5:ENST00000528081.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	33	2	2.26252	3.5361000000000002	4.80968	0.056222	0.00679828	0.18407	0.0711802
chr2	20685012	20685101	1077738	0	-	0.404494	(0.378,0.408]	chr2	115120	2	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	LDAH	ENSG00000118961.15	ENST00000619656.4:ENST00000541941.5:ENST00000440866.6:ENST00000435420.6:ENST00000403006.6:ENST00000237822.8:ENST00000381090.7:ENST00000470099.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	33	2	2.26252	3.5361000000000002	4.80968	0.056222	0.00679828	0.18407	0.0711802
chr20	50593963	50594052	7354444	0	-	0.629214	(0.57,1]	chr20	749980	4	INTRON	INTRON	RIPOR3	ENSG00000042062.13	ENST00000327979.8:ENST00000045083.6:ENST00000488529.5:ENST00000482129.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	52	2	3.30683	3.536095	3.76536	1.35835e-4	1.13407e-4	0.0100405	0.00957524
chr1	90025875	90025973	161006	0	+	0.387755	(0.378,0.408]	chr1	17360	32	INTRON	INTRON	ZNF326	ENSG00000162664.17	ENST00000340281.9:ENST00000394583.7:ENST00000370447.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	35	2	2.2259	3.536085	4.84627	0.0662381	0.00254319	0.181924	0.0465056
chr11	5374291	5374391	4896962	0	-	0.39	(0.378,0.408]	chr11	459187	270	INTRON	INTRON	HBG2:ENSG00000239920:HBE1:OR51B5	ENSG00000196565.15:ENSG00000239920.2:ENSG00000213931.7:ENSG00000167355.8	ENST00000380252.6:ENST00000380259.7:ENST00000292896.3:ENST00000380237.5:ENST00000420726.6:ENST00000420465.6:ENST00000415970.6:ENST00000418729.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:nonsense_mediated_decay:processed_transcript	1	35	2	2.2259	3.536085	4.84627	0.0662381	0.00254319	0.181924	0.0465056
chr12	112144089	112144188	5229680	0	+	0.40404	(0.378,0.408]	chr12	495794	14	INTRON	INTRON	TRAFD1	ENSG00000135148.12	ENST00000257604.9:ENST00000412615.7:ENST00000552890.5:ENST00000548277.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	35	2	2.2259	3.536085	4.84627	0.0662381	0.00254319	0.181924	0.0465056
chr5	154431981	154432081	2755932	0	-	0.4	(0.378,0.408]	chr5	259909	225	INTRON	INTRON	SAP30L-AS1	ENSG00000245275.8	ENST00000658072.1:ENST00000519727.5:ENST00000652933.1:ENST00000524264.6:ENST00000652895.1	lncRNA	lncRNA	lncRNA	lncRNA	1	35	2	2.2259	3.536085	4.84627	0.0662381	0.00254319	0.181924	0.0465056
chr7	137886799	137886899	3654579	0	-	0.39	(0.378,0.408]	chr7	339315	9	INTRON	INTRON	CREB3L2	ENSG00000182158.16	ENST00000330387.11:ENST00000456390.5	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	2.2259	3.536085	4.84627	0.0662381	0.00254319	0.181924	0.0465056
chr10	827000	827094	4541521	0	-	0.56383	(0.515,0.57]	chr10	419228	13	EXON_MRNA	EXON_MRNA:INTRON	LARP4B	ENSG00000107929.16	ENST00000688365.1:ENST00000316157.8:ENST00000690516.1:ENST00000689323.1:ENST00000688042.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	30	2	2.98677	3.536075	4.08538	0.0253843	0.00632549	0.12011	0.0722266
chr5	10429492	10429592	2318439	0	+	0.52	(0.515,0.57]	chr5	224756	2	SS3_PROX	SS3_PROX:INTRON	MARCHF6	ENSG00000145495.16	ENST00000274140.10:ENST00000449913.6:ENST00000511802.5:ENST00000503788.5:ENST00000510792.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	30	2	2.98677	3.536075	4.08538	0.0253843	0.00632549	0.12011	0.0722266
chr6	13663127	13663226	3058738	0	-	0.333333	(0.32,0.35]	chr6	284542	39	INTRON	INTRON	RANBP9	ENSG00000010017.13	ENST00000011619.6	protein_coding	protein_coding	protein_coding	protein_coding	2	48	2	2.45306	3.535975	4.61889	0.0166646	0.00916394	0.102621	0.0855292
chr16	15883148	15883237	6451901	0	-	0.438202	(0.408,0.44]	chr16	621928	1	SS3_PROX	SS3_PROX:INTRON	CEP20	ENSG00000133393.13	ENST00000255759.11:ENST00000573968.5:ENST00000573087.5:ENST00000573396.5:ENST00000575744.5:ENST00000572415.5:ENST00000575073.5:ENST00000573429.5:ENST00000575938.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	46	2	2.73941	3.535895	4.33238	0.0218901	0.002744	0.11491	0.0484022
chr5	32173345	32173445	2597506	0	-	0.54	(0.515,0.57]	chr5	246745	2	SS5_PROX	SS5_PROX:INTRON	GOLPH3	ENSG00000113384.14	ENST00000265070.7:ENST00000503610.5:ENST00000512668.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	224	2	3.12843	3.5358	3.94317	1.26701e-5	4.45854e-8	0.00282139	8.68816e-5
chr13	99250717	99250817	5524939	0	+	0.39	(0.378,0.408]	chr13	528241	57	INTRON	INTRON	UBAC2	ENSG00000134882.16	ENST00000355700.9:ENST00000403766.8:ENST00000468067.5:ENST00000473091.5:ENST00000376440.6:ENST00000494576.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	35	2	2.46373	3.53572	4.60771	0.0382831	0.00567576	0.141795	0.0678837
chr21	42897347	42897447	7411377	0	+	0.41	(0.408,0.44]	chr21	755301	3	SS5_PROX	SS5_PROX:INTRON	NDUFV3	ENSG00000160194.18	ENST00000460259.1:ENST00000340344.4:ENST00000354250.7:ENST00000460740.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	94	2	3.34369	3.53565	3.72761	4.662e-4	1.46092e-4	0.0199613	0.0105174
chr11	108014856	108014956	4855788	0	+	0.4	(0.378,0.408]	chr11	452870	51	INTRON	INTRON	CUL5	ENSG00000166266.14	ENST00000393094.7:ENST00000532064.5:ENST00000526303.1:ENST00000531427.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	97	2	3.21732	3.535615	3.85391	2.98082e-4	2.84248e-4	0.015495	0.015483
chr18	1278267	1278367	6940960	0	-	0.54	(0.515,0.57]	chr18	686570	3	SS5_PROX	SS5_PROX:INTRON	LINC00470	ENSG00000132204.14	ENST00000657423.1:ENST00000657618.1:ENST00000584090.5:ENST00000660947.1:ENST00000669242.1:ENST00000660475.1:ENST00000653775.1:ENST00000661931.1:ENST00000412816.7:ENST00000577867.5:ENST00000584492.5:ENST00000667416.1:ENST00000661852.1:ENST00000657919.1:ENST00000661646.1:ENST00000667776.1:ENST00000654559.1:ENST00000661233.1:ENST00000653213.1:ENST00000659094.1:ENST00000660964.1:ENST00000577403.6:ENST00000660358.1:ENST00000669153.1:ENST00000657121.1:ENST00000655957.1:ENST00000659289.1:ENST00000665133.1:ENST00000671558.1:ENST00000666542.1:ENST00000663512.1:ENST00000663392.1:ENST00000582862.6:ENST00000578835.5:ENST00000669312.1:ENST00000581430.5:ENST00000581212.1	lncRNA	lncRNA	lncRNA	lncRNA	1	33	2	3.03037	3.535615	4.04086	0.0197045	0.00608732	0.120063	0.0676501
chr4	99053363	99053463	2003301	0	+	0.44	(0.408,0.44]	chr4	199877	41	INTRON	INTRON	METAP1	ENSG00000164024.12	ENST00000296411.11:ENST00000510133.5:ENST00000514051.1	protein_coding	protein_coding	protein_coding	protein_coding	3	52	2	2.17784	3.5355550000000004	4.89327	0.00916282	0.00458906	0.0855292	0.0595107
chr7	127930728	127930828	3405207	0	+	0.41	(0.408,0.44]	chr7	318173	10	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000486037.1:ENST00000484767.5:ENST00000492840.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	52	2	2.17784	3.5355550000000004	4.89327	0.00916282	0.00458906	0.0855292	0.0595107
chr5	134165575	134165674	2726240	0	-	0.474747	(0.44,0.476]	chr5	256488	38	INTRON	INTRON	SKP1	ENSG00000113558.19	ENST00000353411.11:ENST00000522552.5:ENST00000521216.5:ENST00000517625.5:ENST00000523966.5:ENST00000522855.5:ENST00000328392.10:ENST00000519054.5:ENST00000519321.5:ENST00000520417.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	94	2	3.45381	3.535495	3.61718	7.37432e-4	7.90762e-5	0.02495	0.00739361
chr7	32507972	32508072	3303358	0	+	0.41	(0.408,0.44]	chr7	306758	118	INTRON	INTRON	AVL9	ENSG00000105778.20	ENST00000485228.1:ENST00000318709.9:ENST00000459629.1:ENST00000409301.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	115	2	2.88568	3.535435	4.18519	5.30887e-4	2.59215e-5	0.0212758	0.00400663
chr11	125618961	125619061	4882906	0	+	0.41	(0.408,0.44]	chr11	456525	4	SS5_PROX	SS5_PROX:INTRON	STT3A	ENSG00000134910.14	ENST00000529196.5:ENST00000392708.9:ENST00000649491.1:ENST00000531491.5:ENST00000525946.5:ENST00000526364.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	43	2	2.39162	3.53528	4.67894	0.0105837	0.0087648	0.0911864	0.0788605
chr19	57905180	57905278	7216855	0	-	0.489796	(0.476,0.515]	chr19	733160	31	INTRON	INTRON	ZNF417	ENSG00000173480.11	ENST00000594396.1	protein_coding	protein_coding	protein_coding	protein_coding	2	43	2	2.37731	3.5352550000000003	4.6932	0.0111793	0.00753088	0.0937192	0.074841
chr6	110896688	110896788	2939174	0	+	0.47	(0.44,0.476]	chr6	276798	28	UTR3	UTR3:EXON_MRNA	AMD1	ENSG00000123505.19	ENST00000672937.2	protein_coding	protein_coding	protein_coding	protein_coding	2	51	2	2.63508	3.535165	4.43525	0.00897296	0.00501007	0.0849778	0.0618077
chr1	120617356	120617456	535914	0	-	0.32	(0.28,0.32]	chr1	63034	378	INTRON	INTRON	PDE4DIPP2	ENSG00000275131.3	ENST00000612480.2	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	2	49	2	2.08149	3.5351049999999997	4.98872	0.031124	0.00838468	0.143644	0.0774402
chr17	32707301	32707401	6755388	0	-	0.29	(0.28,0.32]	chr17	663954	232	INTRON	INTRON	MYO1D	ENSG00000176658.17	ENST00000318217.10:ENST00000394649.8:ENST00000579584.5:ENST00000585094.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	49	2	2.08149	3.5351049999999997	4.98872	0.031124	0.00838468	0.143644	0.0774402
chr14	27563138	27563238	5848483	0	-	0.32	(0.28,0.32]	chr14	556260	2406	INTRON	INTRON	ENSG00000258932	ENSG00000258932.5	ENST00000553392.5:ENST00000554904.5:ENST00000556890.1:ENST00000555797.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	2	49	2	2.0243	3.535045	5.04579	0.0364967	0.00714672	0.153759	0.0723634
chr11	68543643	68543742	4818170	0	+	0.555556	(0.515,0.57]	chr11	448943	54	INTRON	INTRON	PPP6R3	ENSG00000110075.15	ENST00000529907.5:ENST00000534534.5:ENST00000524845.5:ENST00000393800.7:ENST00000265637.8:ENST00000524904.5:ENST00000393801.7:ENST00000265636.9:ENST00000529710.5:ENST00000527403.6:ENST00000525050.5:ENST00000527069.5:ENST00000531244.1:ENST00000529172.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	30	2	2.23241	3.535025	4.83764	0.0581268	0.00279527	0.188651	0.0469265
chr2	32498946	32499046	732253	0	+	0.53	(0.515,0.57]	chr2	84523	49	INTRON	INTRON	BIRC6	ENSG00000115760.15	ENST00000421745.7:ENST00000648282.1	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	2.23241	3.535025	4.83764	0.0581268	0.00279527	0.188651	0.0469265
chr22	20119529	20119589	7478609	0	+	0.533333	(0.515,0.57]	chr22	762784	1	SS5_PROX	SS5_PROX:INTRON	RANBP1	ENSG00000099901.17	ENST00000435265.5:ENST00000432879.5:ENST00000430524.6:ENST00000402752.5:ENST00000488484.1:ENST00000331821.7:ENST00000411892.5:ENST00000416427.5:ENST00000421656.5:ENST00000423859.5:ENST00000418705.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	30	2	2.23241	3.535025	4.83764	0.0581268	0.00279527	0.188651	0.0469265
chr4	73098920	73099020	2159196	0	-	0.55	(0.515,0.57]	chr4	212647	4	SS3_PROX	SS3_PROX:INTRON	ANKRD17	ENSG00000132466.20	ENST00000358602.9:ENST00000558247.5:ENST00000330838.10:ENST00000509867.6:ENST00000513908.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	30	2	2.23241	3.535025	4.83764	0.0581268	0.00279527	0.188651	0.0469265
chr7	92663934	92664033	3571528	0	-	0.545455	(0.515,0.57]	chr7	332790	405	INTRON	INTRON	CDK6	ENSG00000105810.10	ENST00000424848.3:ENST00000265734.8	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	2.23241	3.535025	4.83764	0.0581268	0.00279527	0.188651	0.0469265
chr1	13767440	13767540	31832	0	+	0.41	(0.408,0.44]	chr1	3859	91	INTRON	INTRON	PRDM2	ENSG00000116731.23	ENST00000311066.10:ENST00000376048.9:ENST00000235372.11:ENST00000491134.5:ENST00000502727.5:ENST00000502724.5:ENST00000413440.5:ENST00000343137.8:ENST00000491815.1:ENST00000503842.5:ENST00000505823.5:ENST00000407521.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	52	2	1.6306	3.535	5.4394	0.0544158	6.50925e-4	0.182272	0.0232863
chr4	102811387	102811486	2213198	0	-	0.545455	(0.515,0.57]	chr4	216758	11	EXON_MRNA	EXON_MRNA:INTRON	UBE2D3	ENSG00000109332.20	ENST00000453744.7:ENST00000394804.6:ENST00000394803.9:ENST00000394801.8:ENST00000343106.9:ENST00000508474.5:ENST00000503742.5:ENST00000321805.11:ENST00000350435.11:ENST00000338145.7:ENST00000349311.12:ENST00000504211.5:ENST00000357194.10:ENST00000505207.5:ENST00000507845.5:ENST00000502404.5:ENST00000508635.5:ENST00000505307.5:ENST00000510129.5:ENST00000508476.5:ENST00000502563.5:ENST00000508238.5:ENST00000514755.5:ENST00000508974.5:ENST00000502690.5:ENST00000508818.5:ENST00000503418.5:ENST00000508249.1:ENST00000513098.5:ENST00000503282.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	61	2	3.30665	3.534795	3.76294	0.00213226	2.08636e-4	0.041756	0.0125926
chr9	109096474	109096573	4312368	0	-	0.444444	(0.44,0.476]	chr9	396380	25	INTRON	INTRON	TMEM245	ENSG00000106771.13	ENST00000374586.8:ENST00000491854.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	70	2	3.35227	3.53477	3.71727	0.0022005699999999998	3.2089e-4	0.0417893	0.0159645
chr10	79798819	79798916	4657405	0	-	0.412371	(0.408,0.44]	chr10	429015	4	INTRON	INTRON	NUTM2B-AS1	ENSG00000225484.7	ENST00000671459.1:ENST00000601369.6:ENST00000662025.1:ENST00000670682.1:ENST00000619625.4:ENST00000658528.1:ENST00000477192.6:ENST00000665716.1:ENST00000483080.6:ENST00000661316.1:ENST00000488805.5:ENST00000659471.1:ENST00000484794.6:ENST00000495430.2:ENST00000496359.6	lncRNA	lncRNA	lncRNA	lncRNA	2	43	2	1.93243	3.534725	5.13702	0.0441194	0.00202889	0.162255	0.04086
chr15	44398294	44398394	6014171	0	+	0.41	(0.408,0.44]	chr15	572890	162	INTRON	INTRON	GOLM2	ENSG00000166734.20	ENST00000299957.11:ENST00000650436.1:ENST00000345795.6:ENST00000558847.1	protein_coding	protein_coding	protein_coding	protein_coding	2	43	2	1.93243	3.534725	5.13702	0.0441194	0.00202889	0.162255	0.04086
chr1	154219937	154220037	558762	0	-	0.31	(0.28,0.32]	chr1	66347	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	C1orf43	ENSG00000143612.21	ENST00000648267.1:ENST00000470180.2:ENST00000350592.7:ENST00000362076.8:ENST00000368521.10:ENST00000640799.1:ENST00000368519.5:ENST00000368518.5:ENST00000368516.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	42	2	2.73077	3.5347	4.33863	0.0220748	0.0207276	0.122348	0.115395
chr5	88851197	88851297	2671128	0	-	0.32	(0.28,0.32]	chr5	252833	112	INTRON	INTRON	MEF2C	ENSG00000081189.16	ENST00000504921.7:ENST00000424173.6:ENST00000340208.9:ENST00000636998.1:ENST00000637481.1:ENST00000625674.2:ENST00000437473.6:ENST00000510942.5:ENST00000506554.5:ENST00000637732.1:ENST00000514015.5:ENST00000629612.2:ENST00000636294.1:ENST00000627659.2:ENST00000508569.5:ENST00000513252.5:ENST00000502983.5:ENST00000508610.5:ENST00000503075.1:ENST00000511086.1:ENST00000515093.1:ENST00000509349.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	42	2	2.73077	3.5347	4.33863	0.0220748	0.0207276	0.122348	0.115395
chr6	31540956	31541054	3078835	0	-	0.316327	(0.28,0.32]	chr6	286769	4	EXON_MRNA	EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DDX39B	ENSG00000198563.14	ENST00000458640.5:ENST00000462256.5:ENST00000396172.6:ENST00000482195.5:ENST00000431908.5:ENST00000481456.1:ENST00000427214.5:ENST00000428098.5:ENST00000419338.5:ENST00000456662.5:ENST00000428450.5:ENST00000449757.5:ENST00000456976.5:ENST00000418897.5:ENST00000419020.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	42	2	2.73077	3.5347	4.33863	0.0220748	0.0207276	0.122348	0.115395
chr7	44411208	44411306	3527492	0	-	0.316327	(0.28,0.32]	chr7	328959	63	INTRON	INTRON	NUDCD3	ENSG00000015676.18	ENST00000355451.8:ENST00000460110.5:ENST00000493613.5:ENST00000472246.5:ENST00000464812.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	42	2	2.73077	3.5347	4.33863	0.0220748	0.0207276	0.122348	0.115395
chr2	181019122	181019222	936357	0	+	0.52	(0.515,0.57]	chr2	102627	292	INTRON	INTRON	UBE2E3	ENSG00000170035.16	ENST00000602303.5:ENST00000602959.5:ENST00000602479.5:ENST00000392415.6:ENST00000602291.5:ENST00000410062.9:ENST00000602499.5:ENST00000602710.5:ENST00000602762.5:ENST00000602888.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	61	2	3.53085	3.5346450000000003	3.53844	7.92613e-4	6.59951e-4	0.0259663	0.0232396
chr12	131936997	131937095	5250083	0	+	0.367347	(0.35,0.378]	chr12	499261	22	INTRON	INTRON	PUS1	ENSG00000177192.14	ENST00000443358.6:ENST00000322060.9:ENST00000376649.8:ENST00000542167.2:ENST00000538037.5:ENST00000535067.5:ENST00000537484.1	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	2.24535	3.53456	4.82377	0.0647516	0.00325499	0.179192	0.0524329
chr16	31709697	31709796	6340941	0	+	0.353535	(0.35,0.378]	chr16	608477	19	EXON_LNCRNA	EXON_LNCRNA	CLUHP3	ENSG00000131797.13	ENST00000562354.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	1	36	2	2.24535	3.53456	4.82377	0.0647516	0.00325499	0.179192	0.0524329
chr17	64490381	64490468	6815709	0	-	0.367816	(0.35,0.378]	chr17	673763	2	SS5_PROX	SS5_PROX:INTRON	POLG2	ENSG00000256525.8	ENST00000539111.7:ENST00000581355.1:ENST00000671755.1:ENST00000673460.1:ENST00000585104.2:ENST00000577506.5:ENST00000585141.5:ENST00000578687.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	36	2	2.24535	3.53456	4.82377	0.0647516	0.00325499	0.179192	0.0524329
chr7	72815981	72816079	3553597	0	-	0.377551	(0.35,0.378]	chr7	330584	1	INTRON	INTRON	TYW1B	ENSG00000277149.5	ENST00000612372.4:ENST00000620995.5:ENST00000610600.1	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	2.24535	3.53456	4.82377	0.0647516	0.00325499	0.179192	0.0524329
chr12	120197962	120198053	5433277	0	-	0.527473	(0.515,0.57]	chr12	519352	1	INTRON	INTRON	RPLP0	ENSG00000089157.16	ENST00000392514.9:ENST00000551150.5:ENST00000546989.5:ENST00000313104.9:ENST00000228306.8:ENST00000552461.5:ENST00000549098.5:ENST00000551258.5:ENST00000546990.5:ENST00000547211.5:ENST00000547475.5:ENST00000547173.5:ENST00000550856.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	180	2	2.63289	3.5344300000000004	4.43597	4.02845e-5	3.82515e-6	0.00539487	0.00129308
chr1	11274260	11274360	24763	0	+	0.37	(0.35,0.378]	chr1	2626	2	SS5_PROX	SS5_PROX:INTRON	UBIAD1	ENSG00000120942.14	ENST00000376810.6:ENST00000376804.2:ENST00000486588.6:ENST00000483738.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	36	2	2.39939	3.5343400000000003	4.66929	0.0458078	0.00541617	0.149888	0.066545000000000007
chr8	229907	230007	3883327	0	-	0.36	(0.35,0.378]	chr8	357290	101	INTRON	INTRON	RPL23AP53	ENSG00000223508.5	ENST00000606975.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	1	36	2	2.39939	3.5343400000000003	4.66929	0.0458078	0.00541617	0.149888	0.066545000000000007
chr9	35058583	35058679	4247321	0	-	0.46875	(0.44,0.476]	chr9	390733	12	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	VCP	ENSG00000165280.18	ENST00000679902.1:ENST00000678465.1:ENST00000677257.1:ENST00000679800.1:ENST00000678018.1:ENST00000678650.1:ENST00000448530.6:ENST00000358901.11:ENST00000679647.1:ENST00000681335.1:ENST00000417448.2:ENST00000680916.1:ENST00000679599.1:ENST00000679862.1:ENST00000681690.1:ENST00000679204.2:ENST00000676836.2:ENST00000493886.5:ENST00000479300.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	112	2	3.11388	3.53431	3.95474	1.54083e-4	1.0264e-4	0.0113252	0.00857182
chr19	2081576	2081676	7114846	0	-	0.58	(0.57,1]	chr19	715099	25	INTRON	INTRON	MOB3A	ENSG00000172081.14	ENST00000357066.8:ENST00000592143.2:ENST00000591638.1:ENST00000591326.5:ENST00000591236.1:ENST00000589902.5:ENST00000586676.5:ENST00000588048.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	22	2	2.36411	3.53419	4.70427	0.0408868	9.25341e-4	0.161534	0.0278396
chr2	61286525	61286622	1128670	0	-	0.57732000000000006	(0.57,1]	chr2	121318	12	INTRON	INTRON	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000472706.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	22	2	2.36411	3.53419	4.70427	0.0408868	9.25341e-4	0.161534	0.0278396
chr20	63876672	63876771	7300802	0	+	0.616162	(0.57,1]	chr20	743108	4	INTRON	INTRON	TPD52L2	ENSG00000101150.18	ENST00000611972.4:ENST00000615907.4:ENST00000369927.8:ENST00000346249.9:ENST00000348257.9:ENST00000352482.8:ENST00000351424.8:ENST00000217121.9:ENST00000358548.4	protein_coding	protein_coding	protein_coding	protein_coding	1	22	2	2.36411	3.53419	4.70427	0.0408868	9.25341e-4	0.161534	0.0278396
chr6	154869988	154870088	3003207	0	+	0.58	(0.57,1]	chr6	280861	57	INTRON	INTRON	TIAM2	ENSG00000146426.19	ENST00000461783.7:ENST00000535064.1:ENST00000460692.2:ENST00000449545.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	22	2	2.36411	3.53419	4.70427	0.0408868	9.25341e-4	0.161534	0.0278396
chr5	32586901	32587001	2334763	0	+	0.35	(0.32,0.35]	chr5	225350	4	SS5_PROX	SS5_PROX:INTRON	SUB1	ENSG00000113387.12	ENST00000506237.5:ENST00000512913.5:ENST00000513013.5:ENST00000265073.9:ENST00000511615.5:ENST00000515355.5:ENST00000502897.5:ENST00000510442.1:ENST00000504789.5:ENST00000511988.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	40	2	2.79707	3.5341000000000005	4.27113	0.0199982	0.0170923	0.120668	0.104099
chr15	87431274	87431372	6253860	0	-	0.265306	[0,0.28]	chr15	596796	9	INTRON	INTRON	ENSG00000259560	ENSG00000259560.2	ENST00000665121.1:ENST00000656130.1	lncRNA	lncRNA	lncRNA	lncRNA	1	45	2	2.59548	3.5340100000000003	4.47254	0.0346067	0.020991	0.136649	0.122348
chr7	75360583	75360680	3337666	0	+	0.268041	[0,0.28]	chr7	310719	8	INTRON	INTRON	STAG3L1	ENSG00000205583.14	ENST00000619870.4:ENST00000687422.1:ENST00000684904.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	1	45	2	2.59548	3.5340100000000003	4.47254	0.0346067	0.020991	0.136649	0.122348
chr1	28895431	28895531	58763	0	+	0.46	(0.44,0.476]	chr1	7617	12	INTRON	INTRON	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000647918.1:ENST00000646800.1:ENST00000644342.1:ENST00000646189.1:ENST00000482464.6:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000646260.1:ENST00000373798.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	113	2	2.69735	3.5338600000000002	4.37037	0.00125459	8.53106e-6	0.0323608	0.00210871
chr15	94910948	94911048	6105743	0	+	0.46	(0.44,0.476]	chr15	581682	60	INTRON	INTRON	ENSG00000277654	ENSG00000277654.6	ENST00000618611.4:ENST00000648065.1:ENST00000618377.1:ENST00000621842.4:ENST00000615751.4:ENST00000614581.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	1	34	2	2.20949	3.53383	4.85817	0.0672585	0.00223254	0.183051	0.0435144
chr1	15492174	15492270	380420	0	-	0.354167	(0.35,0.378]	chr1	44603	15	UTR3	UTR3:EXON_MRNA	CASP9	ENSG00000132906.18	ENST00000546424.5:ENST00000333868.10:ENST00000348549.9	protein_coding	protein_coding	protein_coding	protein_coding	2	77	2	3.45621	3.53377	3.61133	0.0011842	9.14099e-4	0.031662	0.0278396
chr3	101860342	101860439	1469733	0	+	0.474227	(0.44,0.476]	chr3	154114	11	UTR3	UTR3:EXON_MRNA	NFKBIZ	ENSG00000144802.11	ENST00000394054.6:ENST00000326172.9	protein_coding	protein_coding	protein_coding	protein_coding	2	46	2	2.13779	3.533735	4.92968	0.0264596	0.00171443	0.122506	0.0381936
chr9	36660158	36660258	4117358	0	+	0.33	(0.32,0.35]	chr9	375318	24	INTRON	INTRON	MELK	ENSG00000165304.8	ENST00000543751.5:ENST00000536860.5:ENST00000541717.4:ENST00000536329.5:ENST00000627766.2:ENST00000298048.7:ENST00000536987.5:ENST00000545008.5:ENST00000626154.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	38	2	2.51061	3.53361	4.55661	0.0364463	0.00927858	0.138959	0.0855292
chr11	762249	762348	4720490	0	+	0.434343	(0.408,0.44]	chr11	436412	14	INTRON	INTRON	TALDO1	ENSG00000177156.11	ENST00000528070.5:ENST00000528097.5:ENST00000530440.1:ENST00000319006.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	44	2	2.55103	3.533535	4.51604	0.0137419	0.00587353	0.0949306	0.0690758
chr6	7285423	7285522	3053101	0	-	0.50505	(0.476,0.515]	chr6	283931	44	UTR3	UTR3:EXON_MRNA:INTRON	SSR1	ENSG00000124783.14	ENST00000474597.5:ENST00000650389.1:ENST00000475213.1:ENST00000244763.9	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	125	2	3.51949	3.53339	3.54729	7.29001e-5	5.51244e-5	0.00767614	0.00608953
chr9	137678902	137679002	4224083	0	+	0.36	(0.35,0.378]	chr9	388198	20	INTRON	INTRON	EHMT1	ENSG00000181090.21	ENST00000462484.5:ENST00000371394.6:ENST00000630754.2:ENST00000460843.6:ENST00000626216.2:ENST00000629335.2:ENST00000637335.1:ENST00000636376.1:ENST00000637655.1:ENST00000636027.1:ENST00000492232.5:ENST00000460486.3:ENST00000636081.1:ENST00000637161.1:ENST00000629417.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	37	2	2.66547	3.533375	4.40128	0.0233639	0.0120289	0.118323	0.0962115
chr1	53939186	53939285	461248	0	-	0.454545	(0.44,0.476]	chr1	55557	87	INTRON	INTRON	HSPB11	ENSG00000081870.12	ENST00000371378.6:ENST00000194214.10:ENST00000371377.3:ENST00000371376.1	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	2.5364	3.5333699999999997	4.53034	0.0309324	0.00672609	0.13151	0.0738715
chr16	48370875	48370974	6483916	0	-	0.474747	(0.44,0.476]	chr16	627085	51	INTRON	INTRON	SIAH1	ENSG00000196470.12	ENST00000568007.5:ENST00000394725.3:ENST00000563745.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	34	2	2.5364	3.5333699999999997	4.53034	0.0309324	0.00672609	0.13151	0.0738715
chr19	12693995	12694093	7141100	0	-	0.459184	(0.44,0.476]	chr19	720621	22	INTRON	INTRON	FBXW9	ENSG00000132004.13	ENST00000587296.1:ENST00000393261.8:ENST00000587955.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	34	2	2.5364	3.5333699999999997	4.53034	0.0309324	0.00672609	0.13151	0.0738715
chr3	138819722	138819822	1831350	0	-	0.47	(0.44,0.476]	chr3	184062	228	INTRON	INTRON	PIK3CB	ENSG00000051382.9	ENST00000674063.1:ENST00000477593.5:ENST00000462898.5:ENST00000483968.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	34	2	2.5364	3.5333699999999997	4.53034	0.0309324	0.00672609	0.13151	0.0738715
chr11	33147063	33147162	4940835	0	-	0.50505	(0.476,0.515]	chr11	462878	17	INTRON	INTRON	CSTF3	ENSG00000176102.13	ENST00000323959.9:ENST00000524827.6:ENST00000526480.1:ENST00000438862.6:ENST00000431742.2:ENST00000524556.1:ENST00000524775.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	51	2	1.86014	3.533295	5.20645	0.0277606	0.00136049	0.137011	0.0336321
chr20	50083731	50083830	7353658	0	-	0.393939	(0.378,0.408]	chr20	749859	1	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	UBE2V1	ENSG00000244687.13	ENST00000340309.7:ENST00000371677.7:ENST00000415862.6:ENST00000557021.5:ENST00000617119.4:ENST00000625172.3:ENST00000396059.7:ENST00000371674.8:ENST00000371657.9:ENST00000483534.5:ENST00000492371.6:ENST00000486653.5:ENST00000490555.1:ENST00000493090.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	130	2	3.33464	3.533185	3.73173	2.59942e-4	1.59496e-5	0.0148796	0.00301858
chr1	6829002	6829102	6080	0	+	0.45	(0.44,0.476]	chr1	1143	34	INTRON	INTRON	CAMTA1	ENSG00000171735.19	ENST00000303635.12:ENST00000490738.5:ENST00000476163.5:ENST00000473578.5:ENST00000557126.5:ENST00000467404.6:ENST00000461311.1:ENST00000486138.1:ENST00000482934.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	55	2	1.71574	3.53303	5.35032	0.045256	3.02713e-4	0.149888	0.0155054
chr1	39573261	39573358	427761	0	-	0.412371	(0.408,0.44]	chr1	51951	8	EXON_MRNA	EXON_MRNA:INTRON	PABPC4	ENSG00000090621.15	ENST00000677006.1:ENST00000372858.8:ENST00000372856.7:ENST00000372857.7:ENST00000372862.7:ENST00000676523.1:ENST00000677548.1:ENST00000678980.1:ENST00000677244.1:ENST00000677609.1:ENST00000679246.1:ENST00000678287.1:ENST00000678625.1:ENST00000470443.6:ENST00000451091.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	46	2	1.88062	3.53299	5.18536	0.0534548	6.17381e-4	0.162935	0.0223951
chr7	102390295	102390395	3371343	0	+	0.44	(0.408,0.44]	chr7	315446	98	INTRON	INTRON	PRKRIP1	ENSG00000128563.13	ENST00000477886.5:ENST00000469763.5:ENST00000482549.5:ENST00000496391.5:ENST00000482465.5:ENST00000462601.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	46	2	1.88062	3.53299	5.18536	0.0534548	6.17381e-4	0.162935	0.0223951
chr11	17076494	17076547	4927722	0	-	0.603774	(0.57,1]	chr11	461299	2	CDS	CDS:EXON_MRNA:INTRON	RPS13	ENSG00000110700.7	ENST00000525634.6:ENST00000526895.5:ENST00000228140.6:ENST00000525828.1:ENST00000533969.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	45	2	2.1026	3.53298	4.96336	0.00326268	2.05554e-4	0.0508595	0.0124557
chr15	72505321	72505421	6059471	0	+	0.29	(0.28,0.32]	chr15	576858	81	INTRON	INTRON	ARIH1	ENSG00000166233.15	ENST00000379887.9:ENST00000570085.5:ENST00000564062.1:ENST00000567762.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	49	2	2.13651	3.5328999999999997	4.92929	0.0265696	0.0098607	0.134088	0.0838128
chr7	6434171	6434261	3477851	0	-	0.311111	(0.28,0.32]	chr7	325413	9	INTRON	INTRON	DAGLB	ENSG00000164535.15	ENST00000297056.11:ENST00000425398.6:ENST00000436575.5:ENST00000454738.5:ENST00000432248.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	49	2	2.13651	3.5328999999999997	4.92929	0.0265696	0.0098607	0.134088	0.0838128
chrX	123647871	123647971	7878193	0	-	0.31	(0.28,0.32]	chrX	802527	21	INTRON	INTRON	THOC2	ENSG00000125676.20	ENST00000245838.13:ENST00000355725.8:ENST00000491737.5	protein_coding	protein_coding	protein_coding	protein_coding	2	49	2	2.13651	3.5328999999999997	4.92929	0.0265696	0.0098607	0.134088	0.0838128
chr10	12011523	12011623	4557467	0	-	0.44	(0.408,0.44]	chr10	420612	64	INTRON	INTRON	UPF2	ENSG00000151461.20	ENST00000357604.10:ENST00000356352.6:ENST00000397053.6	protein_coding	protein_coding	protein_coding	protein_coding	2	46	2	2.00228	3.532855	5.06343	0.0389732	0.00101725	0.143072	0.0293497
chr15	82643562	82643661	6248471	0	-	0.414141	(0.408,0.44]	chr15	596291	15	INTRON	INTRON	CPEB1	ENSG00000214575.10	ENST00000684509.1:ENST00000615198.4:ENST00000620182.4:ENST00000617522.4:ENST00000569257.5:ENST00000567678.1:ENST00000566716.1:ENST00000563519.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	46	2	2.00228	3.532855	5.06343	0.0389732	0.00101725	0.143072	0.0293497
chr16	29520577	29520677	6470771	0	-	0.52	(0.515,0.57]	chr16	625147	147	INTRON	INTRON	ENSG00000288632	ENSG00000288632.1	ENST00000675579.1	lncRNA	lncRNA	lncRNA	lncRNA	4	98	2	2.72642	3.53284	4.33926	7.31116e-4	1.1739e-5	0.0246497	0.00271029
chr16	67038754	67038854	6365640	0	+	0.31	(0.28,0.32]	chr16	611416	16	INTRON	INTRON	CBFB	ENSG00000067955.15	ENST00000651988.1:ENST00000652360.1:ENST00000561924.6:ENST00000290858.11:ENST00000412916.7:ENST00000564034.6:ENST00000650873.1:ENST00000563939.3:ENST00000565389.1:ENST00000567947.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	49	2	1.96475	3.5327200000000003	5.10069	0.0428385	0.00610574	0.162255	0.0676501
chr9	123902605	123902705	4345751	0	-	0.31	(0.28,0.32]	chr9	399137	232	INTRON	INTRON	DENND1A	ENSG00000119522.17	ENST00000373624.6:ENST00000394215.7:ENST00000373620.7:ENST00000373618.1	protein_coding	protein_coding	protein_coding	protein_coding	2	49	2	1.96475	3.5327200000000003	5.10069	0.0428385	0.00610574	0.162255	0.0676501
chr1	120354986	120355067	203333	0	+	0.419753	(0.408,0.44]	chr1	22374	1	EXON_SMALL	EXON_SMALL	U1	ENSG00000273727.1	ENST00000614085.1	snRNA	snRNA	snRNA	snRNA	4	125	2	2.3494	3.532715	4.71603	0.00462504	2.43492e-6	0.062717	0.00108935
chr2	152732869	152732966	894395	0	+	0.319588	(0.28,0.32]	chr2	99120	4	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	ARL6IP6	ENSG00000177917.12	ENST00000690727.1:ENST00000685752.1:ENST00000688293.1:ENST00000686839.1:ENST00000689155.1:ENST00000691702.1:ENST00000691523.1:ENST00000688012.1:ENST00000687504.1:ENST00000455875.6:ENST00000692124.1:ENST00000693573.1:ENST00000692399.1:ENST00000425034.6:ENST00000686080.1:ENST00000326446.10:ENST00000463690.2:ENST00000688130.1:ENST00000495469.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	59	2	1.81152	3.5326999999999997	5.25388	0.034446	0.00385849	0.147767	0.0542786
chr5	131265065	131265165	2484646	0	+	0.32	(0.28,0.32]	chr5	237114	5	INTRON	INTRON	CDC42SE2	ENSG00000158985.14	ENST00000502840.5:ENST00000511432.5:ENST00000506419.5:ENST00000395246.5:ENST00000505065.2:ENST00000504701.5:ENST00000503291.5:ENST00000360515.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	59	2	1.76378	3.5326549999999997	5.30153	0.0395495	0.00332518	0.161534	0.0512081
chr15	30746076	30746176	5993487	0	+	0.3	(0.28,0.32]	chr15	569783	227	INTRON	INTRON	ENSG00000284906:ENSG00000187951	ENSG00000284906.3:ENSG00000187951.11	ENST00000685924.1:ENST00000602616.6:ENST00000562954.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	2	54	2	1.86684	3.5326299999999997	5.19842	0.0605813	0.00152333	0.171122	0.0360297
chr11	65498381	65498480	4806127	0	+	0.585859	(0.57,1]	chr11	446569	8	EXON_LNCRNA	EXON_LNCRNA:SS3_PROX:INTRON	MALAT1	ENSG00000251562.9	ENST00000619449.2:ENST00000534336.1:ENST00000688218.1:ENST00000689729.1:ENST00000693503.1:ENST00000692086.1:ENST00000685846.1:ENST00000690116.1	lncRNA	lncRNA	lncRNA	lncRNA	18	226	2	3.0866	3.53261	3.97862	2.33903e-8	9.34312e-9	5.74303e-5	2.61578e-5
chr19	15261557	15261654	7146683	0	-	0.42268	(0.408,0.44]	chr19	721912	14	INTRON	INTRON	BRD4	ENSG00000141867.19	ENST00000679869.1:ENST00000263377.6:ENST00000371835.8:ENST00000360016.9:ENST00000594841.5:ENST00000602230.1:ENST00000678800.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	67	2	1.9279	3.53246	5.13702	0.00807087	0.00202889	0.0806514	0.04086
chr21	37380210	37380310	7406356	0	+	0.33	(0.32,0.35]	chr21	754850	47	INTRON	INTRON	DYRK1A	ENSG00000157540.22	ENST00000646523.1:ENST00000647425.1:ENST00000647188.2:ENST00000647504.1:ENST00000644942.1:ENST00000338785.8:ENST00000643624.1:ENST00000643551.1:ENST00000426672.6:ENST00000398960.7	protein_coding	protein_coding	protein_coding	protein_coding	7	84	2	1.29171	3.532455	5.7732	0.0508785	3.96807e-4	0.176209	0.0185763
chr16	67852349	67852448	6368475	0	+	0.535354	(0.515,0.57]	chr16	611903	44	INTRON	INTRON	NUTF2	ENSG00000102898.12	ENST00000568390.5:ENST00000219169.9:ENST00000567105.5:ENST00000568233.5:ENST00000569436.6:ENST00000568396.2:ENST00000570026.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	50	2	1.49871	3.53244	5.56617	0.0770828	5.44229e-5	0.196285	0.00603408
chr11	67607716	67607805	4815480	0	+	0.550562	(0.515,0.57]	chr11	448562	1	SS5_PROX	SS5_PROX:INTRON	NDUFV1	ENSG00000167792.13	ENST00000647561.1:ENST00000532303.5:ENST00000532244.5:ENST00000528328.1:ENST00000322776.11:ENST00000529927.5:ENST00000415352.6:ENST00000532343.5:ENST00000524838.5:ENST00000524876.5:ENST00000528548.5:ENST00000529867.5:ENST00000533075.5:ENST00000534139.5:ENST00000525086.5:ENST00000530014.5:ENST00000530103.5:ENST00000532260.1:ENST00000530638.1:ENST00000526138.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	59	2	1.49552	3.532295	5.56907	0.0385038	1.36543e-4	0.159277	0.0106702
chr17	82536678	82536778	6692774	0	+	0.56	(0.515,0.57]	chr17	654627	160	INTRON	INTRON	FOXK2	ENSG00000141568.21	ENST00000473637.6:ENST00000335255.10:ENST00000527313.6:ENST00000570585.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	59	2	1.49552	3.532295	5.56907	0.0385038	1.36543e-4	0.159277	0.0106702
chr7	157176714	157176812	3454322	0	+	0.459184	(0.44,0.476]	chr7	322924	13	INTRON	INTRON	UBE3C	ENSG00000009335.18	ENST00000611269.4:ENST00000348165.10:ENST00000389103.4	protein_coding	protein_coding	protein_coding	protein_coding	4	112	2	3.13746	3.5322899999999997	3.92712	1.7642e-4	8.94727e-5	0.01216	0.0079464
chr1	224972303	224972402	322794	0	+	0.515152	(0.476,0.515]	chr1	37160	26	INTRON	INTRON	DNAH14	ENSG00000185842.16	ENST00000445597.6:ENST00000430092.5:ENST00000400952.7:ENST00000682510.1:ENST00000366849.5:ENST00000439375.6	protein_coding	protein_coding	protein_coding	protein_coding	4	59	2	1.48023	3.53224	5.58425	0.0559072	2.97744e-4	0.18407	0.0160246
chr2	71120059	71120157	1154539	0	-	0.44898	(0.44,0.476]	chr2	123385	18	INTRON	INTRON	MCEE	ENSG00000124370.11	ENST00000413592.5:ENST00000244217.6	protein_coding	protein_coding	protein_coding	protein_coding	2	71	2	3.12799	3.53192	3.93585	0.0050635	1.04728e-4	0.0621733	0.00863456
chr1	26435587	26435686	50226	0	+	0.484848	(0.476,0.515]	chr1	6319	22	INTRON	INTRON	DHDDS	ENSG00000117682.17	ENST00000434391.6:ENST00000427245.6:ENST00000236342.12:ENST00000374186.7:ENST00000525682.6:ENST00000526219.5:ENST00000374185.7:ENST00000487944.5:ENST00000360009.6:ENST00000533087.5:ENST00000531312.5:ENST00000525165.5:ENST00000528557.5:ENST00000525546.5:ENST00000525326.5:ENST00000526278.5:ENST00000436153.6:ENST00000529688.5:ENST00000530781.5:ENST00000531955.5:ENST00000525410.1:ENST00000430232.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	34	2	2.13854	3.531915	4.92529	0.0776563	0.00180221	0.196285	0.0392772
chr10	97226022	97226121	4674482	0	-	0.484848	(0.476,0.515]	chr10	430745	40	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ARHGAP19	ENSG00000213390.11	ENST00000492211.5:ENST00000358308.7:ENST00000358531.9:ENST00000487035.1:ENST00000371027.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	34	2	2.13854	3.531915	4.92529	0.0776563	0.00180221	0.196285	0.0392772
chr12	34025957	34026052	5110482	0	+	0.347368	(0.32,0.35]	chr12	482571	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	ALG10	ENSG00000139133.7	ENST00000538927.1:ENST00000541875.1:ENST00000541178.1:ENST00000266483.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	81	2	3.24087	3.531915	3.82296	0.00420518	2.45656e-4	0.0572185	0.0138769
chr9	131187664	131187764	4216267	0	+	0.42	(0.408,0.44]	chr9	386634	3	SS5_PROX	SS5_PROX:INTRON	NUP214	ENSG00000126883.19	ENST00000695497.1:ENST00000695498.1:ENST00000695496.1:ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000525980.5:ENST00000526346.5:ENST00000531929.5:ENST00000651334.1:ENST00000524578.6:ENST00000453861.6:ENST00000470765.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	94	2	3.15799	3.53173	3.90547	3.8998e-4	2.03612e-4	0.0177751	0.0129859
chr17	49722994	49723094	6793740	0	-	0.38	(0.378,0.408]	chr17	670408	4	SS3_PROX	SS3_PROX:INTRON	FAM117A	ENSG00000121104.8	ENST00000240364.7:ENST00000513602.5:ENST00000511743.5:ENST00000503855.5:ENST00000514018.5:ENST00000505159.5:ENST00000506156.1:ENST00000515240.5:ENST00000509347.5:ENST00000503720.1:ENST00000514841.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	47	2	2.74646	3.531725	4.31699	0.0250408	0.00271684	0.12011	0.0481064
chr3	179203165	179203259	1566354	0	+	0.606383	(0.57,1]	chr3	161922	3	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	PIK3CA	ENSG00000121879.6	ENST00000263967.4:ENST00000643187.1:ENST00000675786.1:ENST00000675467.1:ENST00000674534.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	22	2	2.89463	3.53172	4.16881	0.00788262	0.00574776	0.076155	0.0681402
chr7	23188055	23188137	3289692	0	+	0.585366	(0.57,1]	chr7	305555	1	UTR3	UTR3:EXON_MRNA:INTRON	NUP42	ENSG00000136243.18	ENST00000485250.5:ENST00000438012.5:ENST00000410002.7:ENST00000258742.10:ENST00000487595.5:ENST00000413919.1:ENST00000437140.5:ENST00000486136.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	22	2	2.89463	3.53172	4.16881	0.00788262	0.00574776	0.076155	0.0681402
chr1	32109533	32109633	63468	0	+	0.33	(0.32,0.35]	chr1	8071	10	INTRON	INTRON	KPNA6	ENSG00000025800.14	ENST00000373625.8:ENST00000471599.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	51	2	1.77704	3.53167	5.2863	0.0719969	7.56575e-4	0.187322	0.0251966
chr11	5428453	5428553	4897504	0	-	0.32	(0.28,0.32]	chr11	459187	812	INTRON	INTRON	HBG2:ENSG00000239920:HBE1:OR51B5	ENSG00000196565.15:ENSG00000239920.2:ENSG00000213931.7:ENSG00000167355.8	ENST00000380252.6:ENST00000380259.7:ENST00000292896.3:ENST00000380237.5:ENST00000420726.6:ENST00000420465.6:ENST00000415970.6:ENST00000418729.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:nonsense_mediated_decay:processed_transcript	5	88	2	1.66342	3.5315199999999995	5.39962	0.029437	7.06751e-4	0.128055	0.0241881
chr2	26066772	26066872	713426	0	+	0.44	(0.408,0.44]	chr2	82440	241	INTRON	INTRON	RAB10	ENSG00000084733.11	ENST00000264710.5:ENST00000495146.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	51	2	1.9831	3.5314650000000003	5.07983	0.018491	0.00247652	0.116694	0.0446195
chr16	21909583	21909683	6462371	0	-	0.57	(0.515,0.57]	chr16	623580	3	SS5_PROX	SS5_PROX:INTRON	SMG1P4	ENSG00000185710.9	ENST00000523028.5:ENST00000381448.8:ENST00000517529.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	2	41	2	1.8707	3.53139	5.19208	0.0523213	3.4344e-4	0.160182	0.0164987
chr22	29973748	29973848	7498435	0	+	0.52	(0.515,0.57]	chr22	765034	23	INTRON	INTRON	MTMR3	ENSG00000100330.16	ENST00000333027.7:ENST00000401950.7:ENST00000495098.5:ENST00000445401.5:ENST00000323630.9:ENST00000351488.7:ENST00000415511.1:ENST00000406629.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	41	2	1.8707	3.53139	5.19208	0.0523213	3.4344e-4	0.160182	0.0164987
chr3	191464054	191464154	1590568	0	+	0.48	(0.476,0.515]	chr3	164641	27	INTRON	INTRON	ENSG00000223812	ENSG00000223812.8	ENST00000657540.1:ENST00000439804.6:ENST00000663647.1:ENST00000668751.1:ENST00000666632.1:ENST00000664732.1:ENST00000662007.1:ENST00000641158.1:ENST00000664994.1:ENST00000669884.1:ENST00000642133.1:ENST00000656380.1:ENST00000641055.1:ENST00000662578.1:ENST00000661668.1:ENST00000658347.1:ENST00000661029.1:ENST00000651548.2:ENST00000669360.1:ENST00000653490.1:ENST00000656942.1:ENST00000666456.1:ENST00000668276.1:ENST00000671595.1:ENST00000660290.1	lncRNA	lncRNA	lncRNA	lncRNA	1	34	2	2.63168	3.5313049999999997	4.43093	0.0237106	0.00931369	0.118716	0.0855292
chr4	1889580	1889679	1910752	0	+	0.494949	(0.476,0.515]	chr4	191711	15	INTRON	INTRON	NSD2	ENSG00000109685.19	ENST00000508803.6:ENST00000507820.5:ENST00000508355.5:ENST00000514045.5:ENST00000515806.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	34	2	2.63168	3.5313049999999997	4.43093	0.0237106	0.00931369	0.118716	0.0855292
chr7	32548148	32548247	3303763	0	+	0.515152	(0.476,0.515]	chr7	306774	30	INTRON	INTRON	AVL9	ENSG00000105778.20	ENST00000485228.1:ENST00000318709.9:ENST00000409301.5:ENST00000446718.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	34	2	2.63168	3.5313049999999997	4.43093	0.0237106	0.00931369	0.118716	0.0855292
chr13	19724952	19725052	5552360	0	-	0.43	(0.408,0.44]	chr13	530696	150	INTRON	INTRON	PSPC1	ENSG00000121390.19	ENST00000471658.5:ENST00000492741.5:ENST00000635562.1:ENST00000338910.9:ENST00000619300.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	151	2	3.51829	3.531295	3.5443	9.30234e-5	6.97353e-6	0.00857086	0.00187943
chr14	101768746	101768845	5818565	0	+	0.414141	(0.408,0.44]	chr14	551819	18	INTRON	INTRON	PPP2R5C	ENSG00000078304.20	ENST00000694906.1:ENST00000422945.6:ENST00000554442.5:ENST00000556068.5:ENST00000328724.9:ENST00000554504.1:ENST00000553890.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	114	2	3.27304	3.531205	3.78937	3.51772e-4	3.96337e-5	0.0174637	0.00510383
chr6	152982059	152982158	3249666	0	-	0.393939	(0.378,0.408]	chr6	301947	61	INTRON	INTRON	FBXO5	ENSG00000112029.10	ENST00000367241.3:ENST00000229758.8	protein_coding	protein_coding	protein_coding	protein_coding	3	98	2	3.09258	3.531175	3.96977	8.09686e-4	9.19167e-5	0.0263656	0.00801007
chr1	154253303	154253399	227866	0	+	0.3125	(0.28,0.32]	chr1	26303	13	INTRON	INTRON	UBAP2L	ENSG00000143569.19	ENST00000343815.10:ENST00000271877.11:ENST00000613315.4:ENST00000428931.6:ENST00000361546.6	protein_coding	protein_coding	protein_coding	protein_coding	3	59	2	1.85772	3.53116	5.2046	0.0300199	0.00448664	0.142135	0.0593175
chr16	307108	307206	6426399	0	-	0.581633	(0.57,1]	chr16	617488	23	INTRON	INTRON	AXIN1	ENSG00000103126.15	ENST00000262320.8:ENST00000461023.5:ENST00000354866.7:ENST00000481769.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	51	2	3.19707	3.5308349999999997	3.8646	2.16062e-4	8.0672e-5	0.0129138	0.00804467
chr12	22634161	22634260	5094832	0	+	0.232323	[0,0.28]	chr12	481224	81	INTRON	INTRON	ETNK1	ENSG00000139163.16	ENST00000671733.1:ENST00000335148.8:ENST00000672951.1:ENST00000266517.9:ENST00000538218.2:ENST00000673496.1:ENST00000673406.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	64	2	1.75741	3.530825	5.30424	0.0424454	0.00584781	0.161763	0.0667594
chr4	126724848	126724948	2237959	0	-	0.56	(0.515,0.57]	chr4	219029	262	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	9	157	2	2.67405	3.530825	4.3876	2.87636e-5	8.75303e-6	0.00425059	0.00227522
chr1	100905852	100905951	174435	0	+	0.353535	(0.35,0.378]	chr1	18928	88	INTRON	INTRON	SLC30A7	ENSG00000162695.12	ENST00000370112.8:ENST00000357650.9	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	2.86451	3.530805	4.1971	0.0367539	0.0109111	0.138959	0.0923273
chr11	120338673	120338773	4876222	0	+	0.37	(0.35,0.378]	chr11	455798	10	INTRON	INTRON	ARHGEF12	ENSG00000196914.9	ENST00000397843.7:ENST00000356641.7	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	2.86451	3.530805	4.1971	0.0367539	0.0109111	0.138959	0.0923273
chr16	81328644	81328744	6404357	0	+	0.26	[0,0.28]	chr16	614961	130	INTRON	INTRON	GAN	ENSG00000261609.8	ENST00000648349.2:ENST00000648994.2:ENST00000674788.1:ENST00000650388.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	64	2	1.66929	3.530755	5.39222	0.0537506	0.00453865	0.180803	0.0595107
chr1	176078854	176078954	590417	0	-	0.36	(0.35,0.378]	chr1	70908	322	INTRON	INTRON	COP1	ENSG00000143207.21	ENST00000367669.8:ENST00000367667.5:ENST00000461830.6:ENST00000367666.5:ENST00000649803.1:ENST00000308769.12:ENST00000459744.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	45	2	1.90405	3.53064	5.15723	0.0482651	0.00272706	0.171852	0.0467523
chr19	28519118	28519218	7166286	0	-	0.44	(0.408,0.44]	chr19	724189	509	INTRON	INTRON	ENSG00000283403:ENSG00000267243	ENSG00000283403.1:ENSG00000267243.6	ENST00000592347.5:ENST00000593065.5	lncRNA	lncRNA	lncRNA	lncRNA	11	308	2	3.33461	3.5304900000000004	3.72637	1.33232e-6	5.78392e-7	7.49696e-4	4.12229e-4
chr1	27255573	27255673	53227	0	+	0.56	(0.515,0.57]	chr1	6792	203	INTRON	INTRON	WDTC1	ENSG00000142784.16	ENST00000319394.8:ENST00000361771.7	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	2.74772	3.53049	4.31326	0.0142192	0.0141817	0.103638	0.0959618
chr10	93040240	93040339	4493558	0	+	0.535354	(0.515,0.57]	chr10	413820	256	INTRON	INTRON	EXOC6	ENSG00000138190.17	ENST00000671701.1:ENST00000672817.1:ENST00000371552.8:ENST00000443748.6:ENST00000260762.10:ENST00000495132.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	29	2	2.74772	3.53049	4.31326	0.0142192	0.0141817	0.103638	0.0959618
chr12	133002922	133003020	5252260	0	+	0.530612	(0.515,0.57]	chr12	499633	8	INTRON	INTRON	ZNF26	ENSG00000198393.8	ENST00000537956.1:ENST00000328654.10:ENST00000545101.1:ENST00000540238.5:ENST00000544181.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	29	2	2.74772	3.53049	4.31326	0.0142192	0.0141817	0.103638	0.0959618
chr2	177446325	177446425	926629	0	+	0.57	(0.515,0.57]	chr2	101828	3	INTRON	INTRON	AGPS	ENSG00000018510.18	ENST00000679459.1:ENST00000637633.2:ENST00000680770.1:ENST00000680705.1:ENST00000681752.1:ENST00000460342.2:ENST00000681565.1:ENST00000680893.1:ENST00000681032.1:ENST00000679421.1:ENST00000680910.1:ENST00000409888.1:ENST00000642466.2:ENST00000264167.11:ENST00000680155.1:ENST00000679478.1:ENST00000681449.1:ENST00000681891.1:ENST00000681028.1:ENST00000679639.1:ENST00000680028.1:ENST00000679994.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	61	2	3.25547	3.530335	3.8052	0.00261721	1.67082e-4	0.0455413	0.0111796
chr7	158902993	158903092	3456603	0	+	0.474747	(0.44,0.476]	chr7	323187	5	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	DYNC2I1	ENSG00000126870.16	ENST00000407559.8:ENST00000444851.5:ENST00000467220.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	17	376	2	2.49763	3.53029	4.56295	2.48114e-5	1.45386e-8	0.00391691	3.74243e-5
chr1	180696703	180696803	270243	0	+	0.3	(0.28,0.32]	chr1	31620	139	INTRON	INTRON	XPR1	ENSG00000143324.14	ENST00000367590.9:ENST00000367589.3	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	2.91832	3.5302300000000004	4.14214	0.0579756	0.0102484	0.167723	0.089002
chr11	68183288	68183388	4972902	0	-	0.32	(0.28,0.32]	chr11	469506	27	INTRON	INTRON	KMT5B	ENSG00000110066.15	ENST00000304363.9:ENST00000615954.4:ENST00000441488.6:ENST00000427752.6:ENST00000405515.5:ENST00000401547.6:ENST00000402789.5:ENST00000402185.6:ENST00000453170.5:ENST00000458496.1:ENST00000434573.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	38	2	2.91832	3.5302300000000004	4.14214	0.0579756	0.0102484	0.167723	0.089002
chr12	32135388	32135488	5107244	0	+	0.41	(0.408,0.44]	chr12	482366	259	INTRON	INTRON	BICD1	ENSG00000151746.15	ENST00000652176.1:ENST00000548411.5:ENST00000395758.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	34	2	2.27698	3.53023	4.78348	0.0583528	0.00290352	0.167723	0.0494641
chr12	56715578	56715675	5336133	0	-	0.412371	(0.408,0.44]	chr12	510227	10	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	NACA:ENSG00000285625	ENSG00000196531.14:ENSG00000285625.1	ENST00000678066.1:ENST00000679092.1:ENST00000546862.6:ENST00000678416.1:ENST00000678047.1:ENST00000454682.6:ENST00000550952.6:ENST00000550920.6:ENST00000678376.1:ENST00000356769.7:ENST00000393891.8:ENST00000552540.5:ENST00000548563.5:ENST00000548386.6:ENST00000546392.6:ENST00000547914.5:ENST00000549259.5:ENST00000551775.5:ENST00000552055.5:ENST00000549855.5:ENST00000551793.5:ENST00000551520.1:ENST00000548084.1:ENST00000647707.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	34	2	2.27698	3.53023	4.78348	0.0583528	0.00290352	0.167723	0.0494641
chr15	64138395	64138495	6043308	0	+	0.42	(0.408,0.44]	chr15	575580	3	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	SNX1	ENSG00000028528.15	ENST00000559844.6:ENST00000380285.7:ENST00000261889.9:ENST00000558040.5:ENST00000560861.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	34	2	2.27698	3.53023	4.78348	0.0583528	0.00290352	0.167723	0.0494641
chr5	145682804	145682904	2745109	0	-	0.41	(0.408,0.44]	chr5	258670	2091	INTRON	INTRON	PRELID2	ENSG00000186314.12	ENST00000510259.5	protein_coding	processed_transcript	protein_coding	processed_transcript	1	34	2	2.27698	3.53023	4.78348	0.0583528	0.00290352	0.167723	0.0494641
chr7	156708246	156708345	3686142	0	-	0.434343	(0.408,0.44]	chr7	341983	197	INTRON	INTRON	LMBR1	ENSG00000105983.23	ENST00000353442.10:ENST00000448926.5:ENST00000415428.5:ENST00000454132.5:ENST00000434503.5:ENST00000461603.5:ENST00000486837.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	34	2	2.27698	3.53023	4.78348	0.0583528	0.00290352	0.167723	0.0494641
chr17	30753798	30753897	6590026	0	+	0.555556	(0.515,0.57]	chr17	640860	101	INTRON	INTRON	SUZ12P1	ENSG00000264538.7	ENST00000578070.5:ENST00000579526.5:ENST00000690405.1:ENST00000497969.6:ENST00000578195.6:ENST00000582557.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	2	61	2	3.47959	3.530115	3.58064	8.38022e-4	6.54693e-4	0.0263691	0.0233335
chr15	65777161	65777261	6209645	0	-	0.38	(0.378,0.408]	chr15	592617	99	INTRON	INTRON	DENND4A	ENSG00000174485.16	ENST00000443035.8:ENST00000431932.6:ENST00000564674.5:ENST00000568515.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	150	2	2.20258	3.5301	4.85762	0.00323986	3.71822e-7	0.0507788	3.13185e-4
chr11	110294072	110294171	5041312	0	-	0.525253	(0.515,0.57]	chr11	474757	58	INTRON	INTRON	RDX	ENSG00000137710.17	ENST00000645527.1:ENST00000530749.5:ENST00000528498.5:ENST00000528900.5:ENST00000530301.5:ENST00000647231.1:ENST00000646663.1:ENST00000645495.2:ENST00000544551.5:ENST00000530131.5:ENST00000534683.1:ENST00000528556.5:ENST00000533991.1:ENST00000533678.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	29	2	2.46104	3.5300900000000004	4.59914	0.032841	0.00616166	0.145164	0.0676501
chr3	177079178	177079278	1871249	0	-	0.54	(0.515,0.57]	chr3	187372	4	SS3_PROX	SS3_PROX:INTRON	TBL1XR1	ENSG00000177565.18	ENST00000457928.7:ENST00000430069.5:ENST00000673974.1:ENST00000631253.2:ENST00000352800.10:ENST00000422442.6:ENST00000428970.5:ENST00000424913.5:ENST00000437738.5:ENST00000431421.5:ENST00000635794.1:ENST00000630796.2:ENST00000450267.5:ENST00000630833.2:ENST00000431674.5:ENST00000422066.5:ENST00000443315.5:ENST00000627825.2:ENST00000427349.5:ENST00000413084.5:ENST00000637137.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	29	2	2.46104	3.5300900000000004	4.59914	0.032841	0.00616166	0.145164	0.0676501
chr6	143678309	143678409	2979846	0	+	0.55	(0.515,0.57]	chr6	279270	1	SS5_PROX	SS5_PROX:INTRON	PHACTR2	ENSG00000112419.15	ENST00000367584.8:ENST00000427704.6:ENST00000305766.10:ENST00000440869.7:ENST00000367582.7:ENST00000402863.3:ENST00000451827.6:ENST00000542769.5:ENST00000397980.3:ENST00000545919.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	29	2	2.46104	3.5300900000000004	4.59914	0.032841	0.00616166	0.145164	0.0676501
chr6	157579202	157579302	3013524	0	+	0.55	(0.515,0.57]	chr6	281274	361	INTRON	INTRON	ZDHHC14	ENSG00000175048.17	ENST00000414563.6:ENST00000359775.10:ENST00000518214.5:ENST00000523468.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	29	2	2.46104	3.5300900000000004	4.59914	0.032841	0.00616166	0.145164	0.0676501
chr7	27661499	27661598	3510931	0	-	0.545455	(0.515,0.57]	chr7	327353	115	INTRON	INTRON	HIBADH	ENSG00000106049.9	ENST00000265395.7:ENST00000428288.2:ENST00000496814.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	29	2	2.46104	3.5300900000000004	4.59914	0.032841	0.00616166	0.145164	0.0676501
chr17	78195452	78195550	6682030	0	+	0.520408	(0.515,0.57]	chr17	652698	23	INTRON	INTRON	AFMID	ENSG00000183077.16	ENST00000591256.5:ENST00000409257.10:ENST00000327898.9:ENST00000591952.5:ENST00000588800.5:ENST00000588199.5:ENST00000589107.5:ENST00000592988.5:ENST00000589256.5:ENST00000586542.5:ENST00000586731.1:ENST00000591538.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	12	186	2	2.53649	3.530055	4.52362	2.58236e-5	3.74471e-6	0.00400663	0.0013919
chr1	93106439	93106539	162811	0	+	0.3	(0.28,0.32]	chr1	17567	251	INTRON	INTRON	MTF2	ENSG00000143033.18	ENST00000540243.5:ENST00000545708.5:ENST00000474314.6:ENST00000370298.9:ENST00000473430.5:ENST00000494963.5:ENST00000471953.5:ENST00000370303.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	53	2	2.63379	3.5300450000000003	4.4263	0.0330296	0.00503861	0.133816	0.0646039
chr5	131751679	131751779	2720291	0	-	0.35	(0.32,0.35]	chr5	255730	66	INTRON	INTRON	FNIP1	ENSG00000217128.13	ENST00000510461.6:ENST00000307954.12:ENST00000307968.11:ENST00000511848.1	protein_coding	protein_coding	protein_coding	protein_coding	4	64	2	1.59364	3.53003	5.46642	0.0413426	0.00127669	0.161557	0.0326395
chr1	411867	411967	354668	0	-	0.43	(0.408,0.44]	chr1	40950	316	INTRON	INTRON	ENSG00000237094	ENSG00000237094.12	ENST00000455207.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	1	34	2	2.43988	3.529985	4.62009	0.0398236	0.00504155	0.143072	0.0646039
chrX	121273100	121273200	7715921	0	+	0.43	(0.408,0.44]	chrX	789390	869	INTRON	INTRON	ENSG00000286163	ENSG00000286163.1	ENST00000651788.1	lncRNA	lncRNA	lncRNA	lncRNA	1	34	2	2.43988	3.529985	4.62009	0.0398236	0.00504155	0.143072	0.0646039
chr19	29972916	29973015	7047862	0	+	0.272727	[0,0.28]	chr19	702669	13	INTRON	INTRON	URI1	ENSG00000105176.18	ENST00000360605.8:ENST00000570564.5:ENST00000574233.5:ENST00000392271.6:ENST00000574110.5:ENST00000574666.5:ENST00000576442.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	53	2	1.8986	3.52995	5.1613	0.0531512	0.00866441	0.179787	0.0787025
chr1	171509160	171509259	253451	0	+	0.40404	(0.378,0.408]	chr1	30096	231	INTRON	INTRON	PRRC2C	ENSG00000117523.18	ENST00000647382.2:ENST00000367742.7:ENST00000476522.5:ENST00000338920.8:ENST00000467601.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	116	2	3.12462	3.529925	3.93523	1.93873e-4	1.00937e-4	0.0127226	0.00848303
chr10	92921248	92921348	4492351	0	+	0.47	(0.44,0.476]	chr10	413742	8	INTRON	INTRON	EXOC6	ENSG00000138190.17	ENST00000671701.1:ENST00000672817.1:ENST00000371552.8:ENST00000443748.6:ENST00000260762.10	protein_coding	protein_coding	protein_coding	protein_coding	3	51	2	2.03266	3.529845	5.02703	0.0155853	0.00278015	0.109411	0.0469265
chr3	138685897	138685996	1829992	0	-	0.454545	(0.44,0.476]	chr3	183960	7	INTRON	INTRON	PIK3CB	ENSG00000051382.9	ENST00000674063.1:ENST00000289153.6:ENST00000477593.5:ENST00000469284.6:ENST00000544716.5:ENST00000462898.5:ENST00000481749.5:ENST00000493568.5:ENST00000473435.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	51	2	2.03266	3.529845	5.02703	0.0155853	0.00278015	0.109411	0.0469265
chr16	75381260	75381359	6528770	0	-	0.313131	(0.28,0.32]	chr16	632317	1	INTRON	INTRON	CFDP1	ENSG00000153774.9	ENST00000283882.4:ENST00000612761.1:ENST00000569341.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	54	2	1.91611	3.52976	5.14341	0.0539102	0.00185891	0.164153	0.039946
chr12	95503165	95503265	5193314	0	+	0.35	(0.32,0.35]	chr12	491165	67	INTRON	INTRON	METAP2	ENSG00000111142.14	ENST00000535095.5:ENST00000546753.5:ENST00000261220.13:ENST00000323666.10:ENST00000550777.5:ENST00000551840.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	58	2	2.22655	3.5297099999999997	4.83287	0.0095071	0.00823133	0.0817766	0.0812969
chr8	31144317	31144414	3729067	0	+	0.42268	(0.408,0.44]	chr8	346676	3	INTRON	INTRON	WRN	ENSG00000165392.11	ENST00000650667.1:ENST00000298139.7:ENST00000521620.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	95	2	3.12171	3.529515	3.93732	6.63666e-4	1.0367e-4	0.0234815	0.00863144
chr8	96305651	96305748	3803671	0	+	0.412371	(0.408,0.44]	chr8	352706	11	INTRON	INTRON	PTDSS1	ENSG00000156471.13	ENST00000517309.6:ENST00000337004.8:ENST00000522072.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	37	2	2.95296	3.52945	4.10594	0.0219367	0.00929354	0.123836	0.0817766
chr3	60092939	60093039	1710543	0	-	0.38	(0.378,0.408]	chr3	176138	122	INTRON	INTRON	FHIT	ENSG00000189283.10	ENST00000492590.6:ENST00000476844.5:ENST00000468189.5:ENST00000488467.5	protein_coding	protein_coding	protein_coding	protein_coding	1	37	2	2.84663	3.529445	4.21226	0.0177403	0.0133954	0.11319	0.0946278
chr1	52893248	52893345	105423	0	+	0.402062	(0.378,0.408]	chr1	13791	4	UTR3	UTR3:EXON_MRNA	ZYG11A	ENSG00000203995.10	ENST00000371532.5:ENST00000612017.4:ENST00000371528.2	protein_coding	protein_coding	protein_coding	protein_coding	2	48	2	2.21238	3.529325	4.84627	0.0218124	0.00254319	0.11491	0.0465056
chr1	161116851	161116951	573823	0	-	0.27	[0,0.28]	chr1	69586	141	INTRON	INTRON	PFDN2	ENSG00000143256.5	ENST00000468311.1:ENST00000368010.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	43	2	2.20927	3.52929	4.84931	0.0794763	0.00779241	0.19979	0.0787356
chr15	63760444	63760542	6200165	0	-	0.255102	[0,0.28]	chr15	591421	17	INTRON	INTRON	HERC1	ENSG00000103657.14	ENST00000443617.7:ENST00000561400.1:ENST00000559886.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	43	2	2.20927	3.52929	4.84931	0.0794763	0.00779241	0.19979	0.0787356
chr2	32564201	32564298	732936	0	+	0.278351	[0,0.28]	chr2	84649	10	EXON_MRNA	EXON_MRNA:INTRON	BIRC6:ENSG00000279544	ENSG00000115760.15:ENSG00000279544.1	ENST00000421745.7:ENST00000471232.5:ENST00000623116.1	protein_coding	protein_coding	protein_coding:TEC	protein_coding:retained_intron:TEC	1	43	2	2.20927	3.52929	4.84931	0.0794763	0.00779241	0.19979	0.0787356
chr1	89850955	89851055	159825	0	+	0.28	[0,0.28]	chr1	17285	39	INTRON	INTRON	LRRC8D	ENSG00000171492.14	ENST00000525774.5:ENST00000337338.9:ENST00000394593.7:ENST00000532201.5:ENST00000414841.1:ENST00000527156.1:ENST00000441269.2	protein_coding	protein_coding	protein_coding	protein_coding	1	39	2	2.43761	3.5292250000000003	4.62084	0.0423864	0.0313633	0.161744	0.13151
chr15	72487000	72487100	6059287	0	+	0.21	[0,0.28]	chr15	576852	116	INTRON	INTRON	ARIH1	ENSG00000166233.15	ENST00000379887.9:ENST00000570085.5:ENST00000564062.1:ENST00000567762.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	39	2	2.43761	3.5292250000000003	4.62084	0.0423864	0.0313633	0.161744	0.13151
chr20	7979699	7979797	7312520	0	-	0.27551	[0,0.28]	chr20	744674	25	UTR3	UTR3:EXON_MRNA	TMX4	ENSG00000125827.9	ENST00000246024.7	protein_coding	protein_coding	protein_coding	protein_coding	1	39	2	2.43761	3.5292250000000003	4.62084	0.0423864	0.0313633	0.161744	0.13151
chr20	62193015	62193115	7297990	0	+	0.25	[0,0.28]	chr20	742321	2	SS3_PROX	SS3_PROX:INTRON	MTG2	ENSG00000101181.18	ENST00000370823.8:ENST00000466933.1:ENST00000471352.5:ENST00000467101.5:ENST00000448254.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	39	2	2.43761	3.5292250000000003	4.62084	0.0423864	0.0313633	0.161744	0.13151
chr6	83009789	83009889	3144963	0	-	0.24	[0,0.28]	chr6	293169	520	INTRON	INTRON	UBE3D	ENSG00000118420.17	ENST00000369747.8:ENST00000237186.10:ENST00000509102.5:ENST00000430071.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	39	2	2.43761	3.5292250000000003	4.62084	0.0423864	0.0313633	0.161744	0.13151
chr7	39629320	39629419	3309207	0	+	0.222222	[0,0.28]	chr7	307358	45	INTRON	INTRON	RALA	ENSG00000006451.8	ENST00000468201.1:ENST00000005257.7:ENST00000436179.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	39	2	2.43761	3.5292250000000003	4.62084	0.0423864	0.0313633	0.161744	0.13151
chr8	125211383	125211483	3854687	0	+	0.25	[0,0.28]	chr8	355249	287	INTRON	INTRON	NSMCE2	ENSG00000156831.8	ENST00000517532.5:ENST00000287437.8:ENST00000522563.5:ENST00000517315.1	protein_coding	protein_coding	protein_coding	protein_coding	1	39	2	2.43761	3.5292250000000003	4.62084	0.0423864	0.0313633	0.161744	0.13151
chr13	21393639	21393738	5556825	0	-	0.424242	(0.408,0.44]	chr13	531134	14	INTRON	INTRON	ZDHHC20	ENSG00000180776.16	ENST00000400590.8:ENST00000542645.5:ENST00000382466.7:ENST00000320220.13:ENST00000494731.5:ENST00000415724.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	46	2	1.81572	3.529195	5.24267	0.0626779	4.83767e-4	0.175915	0.0199261
chr16	15959485	15959585	6307857	0	+	0.53	(0.515,0.57]	chr16	603510	93	INTRON	INTRON	ABCC1	ENSG00000103222.20	ENST00000574224.2:ENST00000678422.1:ENST00000677164.1:ENST00000399408.7:ENST00000572882.3:ENST00000399410.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	47	2	1.67758	3.52917	5.38076	0.0471728	3.24968e-4	0.168737	0.0165891
chr18	733759	733857	6939907	0	-	0.255102	[0,0.28]	chr18	686461	4	INTRON	INTRON	YES1	ENSG00000176105.14	ENST00000584307.5:ENST00000314574.5:ENST00000577961.5	protein_coding	protein_coding	protein_coding	protein_coding	1	39	2	2.36637	3.52914	4.69191	0.0500615	0.0269474	0.17488	0.123442
chr20	34484390	34484489	7260353	0	+	0.262626	[0,0.28]	chr20	737555	28	INTRON	INTRON	ITCH	ENSG00000078747.16	ENST00000374864.10:ENST00000535650.7:ENST00000670516.1:ENST00000665484.1:ENST00000664852.1:ENST00000660337.1:ENST00000262650.10:ENST00000665346.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	39	2	2.36637	3.52914	4.69191	0.0500615	0.0269474	0.17488	0.123442
chr4	184708383	184708482	2304629	0	-	0.161616	[0,0.28]	chr4	222921	56	INTRON	INTRON	CENPU	ENSG00000151725.12	ENST00000281453.10:ENST00000510146.5:ENST00000506535.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	41	2	2.8569	3.52898	4.20106	0.0695895	0.013822	0.184298	0.10247
chr9	83686854	83686954	4272871	0	-	0.26	[0,0.28]	chr9	392981	3	INTRON	INTRON	UBQLN1	ENSG00000135018.14	ENST00000376395.9:ENST00000257468.11:ENST00000529923.1	protein_coding	protein_coding	protein_coding	protein_coding	1	41	2	2.8569	3.52898	4.20106	0.0695895	0.013822	0.184298	0.10247
chr10	72719990	72720090	4450371	0	+	0.42	(0.408,0.44]	chr10	410752	37	INTRON	INTRON	MCU	ENSG00000156026.15	ENST00000373053.8:ENST00000357157.10:ENST00000604679.5:ENST00000604372.5:ENST00000603649.5:ENST00000605597.5:ENST00000536019.5:ENST00000604152.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	46	2	2.05947	3.5289200000000003	4.99837	0.0333232	0.00131369	0.134145	0.0333932
chr17	46157792	46157892	6784517	0	-	0.41	(0.408,0.44]	chr17	669232	5	INTRON	INTRON	KANSL1	ENSG00000120071.15	ENST00000574590.6:ENST00000572904.6:ENST00000432791.7:ENST00000575318.6:ENST00000638275.1:ENST00000262419.10:ENST00000648792.1:ENST00000639531.1:ENST00000639150.1:ENST00000639853.1:ENST00000571698.2:ENST00000639375.1:ENST00000638269.1:ENST00000576248.2:ENST00000639356.1:ENST00000574655.6:ENST00000639099.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	94	2	3.12458	3.528835	3.93309	4.61817e-4	1.78185e-4	0.0194611	0.0121697
chr8	105331032	105331132	3837365	0	+	0.28	[0,0.28]	chr8	354033	109	INTRON	INTRON	ZFPM2	ENSG00000169946.14	ENST00000518180.1:ENST00000407775.7:ENST00000520492.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	64	2	1.62313	3.528705	5.43428	0.0605286	0.00400834	0.191883	0.0551303
chr9	133259418	133259518	4369870	0	-	0.59	(0.57,1]	chr9	402051	2	SS5_PROX	SS5_PROX:INTRON	ABO	ENSG00000175164.16	ENST00000679909.1:ENST00000453660.4:ENST00000647353.1:ENST00000611156.4:ENST00000538324.2:ENST00000651471.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	51	2	3.13943	3.52868	3.91793	3.01503e-4	5.86096e-5	0.0155054	0.00668534
chr20	44931651	44931741	7278159	0	+	0.455556	(0.44,0.476]	chr20	739962	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	PABPC1L	ENSG00000101104.13	ENST00000255136.8:ENST00000217073.7:ENST00000537323.5:ENST00000217074.9:ENST00000490798.6:ENST00000476056.6:ENST00000674244.1:ENST00000372824.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	61	2	2.15726	3.52863	4.9	0.00508124	0.00423315	0.0646039	0.0572185
chr1	203811407	203811507	296838	0	+	0.36	(0.35,0.378]	chr1	34134	80	INTRON	INTRON	ZC3H11A:ZBED6	ENSG00000058673.17:ENSG00000257315.3	ENST00000367210.3:ENST00000453771.5:ENST00000432282.5:ENST00000638800.1:ENST00000367214.5:ENST00000639812.1:ENST00000367212.7:ENST00000332127.8:ENST00000550078.2:ENST00000495527.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	36	2	2.1617	3.5284649999999997	4.89523	0.0771502	0.00253947	0.196285	0.0465056
chr5	145808317	145808416	2746370	0	-	0.373737	(0.35,0.378]	chr5	258695	114	INTRON	INTRON	PRELID2	ENSG00000186314.12	ENST00000683046.1:ENST00000334744.8:ENST00000394450.6:ENST00000505416.5:ENST00000511435.1	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	2.1617	3.5284649999999997	4.89523	0.0771502	0.00253947	0.196285	0.0465056
chr6	2967291	2967390	3047689	0	-	0.373737	(0.35,0.378]	chr6	283597	10	UTR5	UTR5:EXON_MRNA:INTRON	SERPINB6	ENSG00000124570.21	ENST00000643098.1:ENST00000380546.7:ENST00000380539.7:ENST00000380529.5:ENST00000649845.1:ENST00000644178.1:ENST00000612421.3:ENST00000616722.4:ENST00000642543.1:ENST00000644388.1:ENST00000380520.6:ENST00000645580.1:ENST00000644693.1:ENST00000646775.1:ENST00000645421.1:ENST00000643227.1:ENST00000646688.1:ENST00000644777.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	36	2	2.1617	3.5284649999999997	4.89523	0.0771502	0.00253947	0.196285	0.0465056
chr8	90231947	90232046	3792411	0	+	0.313131	(0.28,0.32]	chr8	351776	77	INTRON	INTRON	LINC00534	ENSG00000253394.7	ENST00000662145.1:ENST00000655523.1:ENST00000517400.6:ENST00000658299.1:ENST00000663329.1:ENST00000658342.1:ENST00000523283.6:ENST00000655219.1:ENST00000662692.1:ENST00000667296.1:ENST00000667565.1:ENST00000523406.2:ENST00000659030.1:ENST00000653734.1:ENST00000654785.1:ENST00000524361.5:ENST00000668745.1:ENST00000666641.2:ENST00000661519.1:ENST00000671657.1:ENST00000655123.1:ENST00000663098.1:ENST00000670903.1:ENST00000663619.1:ENST00000654946.1	lncRNA	lncRNA	lncRNA	lncRNA	2	56	2	2.81334	3.52827	4.2432	0.0479043	0.00248627	0.153019	0.0461207
chr1	246903175	246903266	681668	0	-	0.461538	(0.44,0.476]	chr1	80005	1	INTRON	INTRON	AHCTF1	ENSG00000153207.16	ENST00000648844.2:ENST00000326225.3:ENST00000366508.5	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	2.81896	3.5282549999999997	4.23755	0.0263357	0.0120766	0.122221	0.0962311
chrX	65530569	65530664	7827611	0	-	0.442105	(0.44,0.476]	chrX	798730	3	INTRON	INTRON	LAS1L	ENSG00000001497.18	ENST00000677056.1:ENST00000677969.1:ENST00000374811.8:ENST00000374807.9:ENST00000677834.1:ENST00000484069.1:ENST00000374804.9:ENST00000677986.1:ENST00000677087.1:ENST00000679056.1:ENST00000679261.1:ENST00000678074.1:ENST00000678705.1:ENST00000679277.1:ENST00000677154.1:ENST00000678547.1:ENST00000678956.1:ENST00000679116.1:ENST00000678848.1:ENST00000678173.1:ENST00000676986.1:ENST00000678823.1:ENST00000678570.1:ENST00000678602.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	32	2	2.81896	3.5282549999999997	4.23755	0.0263357	0.0120766	0.122221	0.0962311
chrX	23984361	23984453	7774978	0	-	0.282609	(0.28,0.32]	chrX	794780	8	UTR3	UTR3:EXON_MRNA	KLHL15	ENSG00000174010.10	ENST00000685367.1:ENST00000689334.1:ENST00000328046.8:ENST00000693269.1:ENST00000692681.1	protein_coding	protein_coding	protein_coding	protein_coding	2	49	2	1.90263	3.528105	5.15358	0.0503272	0.0052282	0.17488	0.0633615
chr1	45611424	45611521	93486	0	+	0.371134	(0.35,0.378]	chr1	12614	10	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	NASP	ENSG00000132780.17	ENST00000437901.6:ENST00000537798.5:ENST00000437362.6:ENST00000350030.8:ENST00000527359.5:ENST00000453748.5:ENST00000525515.5:ENST00000528238.5:ENST00000372052.8:ENST00000351223.7:ENST00000530073.5:ENST00000481782.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	54	2	2.07049	3.5280500000000004	4.98561	0.0140397	0.00474226	0.102801	0.0600445
chr15	84175250	84175349	6087636	0	+	0.353535	(0.35,0.378]	chr15	579315	7	INTRON	INTRON	UBE2Q2L	ENSG00000259511.3	ENST00000637853.1:ENST00000636149.1:ENST00000637041.1:ENST00000558195.3:ENST00000637567.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	1	36	2	2.47065	3.52801	4.58537	0.0386172	0.00703328	0.142656	0.0754576
chr10	72340288	72340388	4644164	0	-	0.45	(0.44,0.476]	chr10	427322	1	SS5_PROX	SS5_PROX:INTRON	DNAJB12	ENSG00000148719.16	ENST00000338820.7:ENST00000394903.6:ENST00000444643.8:ENST00000461919.5:ENST00000463786.2	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	2.29425	3.527465	4.76068	0.0518406	0.00653414	0.176696	0.0699952
chr12	1707473	1707573	5064332	0	+	0.45	(0.44,0.476]	chr12	477866	41	INTRON	INTRON	ADIPOR2	ENSG00000006831.10	ENST00000537545.1:ENST00000357103.5:ENST00000540974.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	32	2	2.29425	3.527465	4.76068	0.0518406	0.00653414	0.176696	0.0699952
chr15	78447262	78447361	6067574	0	+	0.454545	(0.44,0.476]	chr15	577920	70	INTRON	INTRON	IREB2	ENSG00000136381.13	ENST00000560840.5:ENST00000559215.5:ENST00000258886.13:ENST00000558525.5:ENST00000560440.5:ENST00000558570.5:ENST00000560454.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	32	2	2.29425	3.527465	4.76068	0.0518406	0.00653414	0.176696	0.0699952
chr19	47639582	47639682	7086067	0	+	0.45	(0.44,0.476]	chr19	709045	316	INTRON	INTRON	ENSG00000268746	ENSG00000268746.1	ENST00000599924.1	lncRNA	lncRNA	lncRNA	lncRNA	1	32	2	2.29425	3.527465	4.76068	0.0518406	0.00653414	0.176696	0.0699952
chr20	53575027	53575126	7358293	0	-	0.474747	(0.44,0.476]	chr20	750289	28	INTRON	INTRON	ZNF217	ENSG00000171940.14	ENST00000371471.7:ENST00000302342.3:ENST00000437222.1	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	2.29425	3.527465	4.76068	0.0518406	0.00653414	0.176696	0.0699952
chr12	94365696	94365796	5389153	0	-	0.48	(0.476,0.515]	chr12	513815	297	INTRON	INTRON	CEP83	ENSG00000173588.16	ENST00000397809.10:ENST00000339839.9:ENST00000547232.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	93	2	3.07601	3.52743	3.97885	5.95211e-4	1.30749e-4	0.0221865	0.0103941
chr7	129244133	129244233	3409663	0	+	0.4	(0.378,0.408]	chr7	318776	183	INTRON	INTRON	AHCYL2	ENSG00000158467.17	ENST00000325006.8:ENST00000446544.6	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	2.13703	3.5273950000000003	4.91776	0.0797592	0.00196368	0.19979	0.0411469
chr9	128085967	128086067	4202609	0	+	0.39	(0.378,0.408]	chr9	383913	170	INTRON	INTRON	SLC25A25	ENSG00000148339.13	ENST00000373068.6:ENST00000373069.10	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	2.13703	3.5273950000000003	4.91776	0.0797592	0.00196368	0.19979	0.0411469
chr10	72751814	72751914	4450692	0	+	0.52	(0.515,0.57]	chr10	410760	149	INTRON	INTRON	MCU	ENSG00000156026.15	ENST00000373053.8:ENST00000357157.10:ENST00000604679.5:ENST00000604372.5:ENST00000603649.5:ENST00000605597.5:ENST00000536019.5:ENST00000604152.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	107	2	3.4716	3.52724	3.58288	7.76698e-5	2.88277e-5	0.00786812	0.00425384
chr1	61160925	61161025	128181	0	+	0.54	(0.515,0.57]	chr1	14778	280	INTRON	INTRON	NFIA	ENSG00000162599.17	ENST00000371191.5:ENST00000664495.1:ENST00000476646.5:ENST00000407417.7:ENST00000479364.1:ENST00000371189.8:ENST00000670151.1:ENST00000664149.1:ENST00000662015.1:ENST00000403491.8:ENST00000371187.7:ENST00000485903.6:ENST00000371185.6:ENST00000371184.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	31	2	2.12971	3.5272200000000002	4.92473	0.0757903	0.00108255	0.194427	0.0300133
chr3	183767341	183767440	1580998	0	+	0.565657	(0.515,0.57]	chr3	163102	47	INTRON	INTRON	YEATS2	ENSG00000163872.16	ENST00000305135.10	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	2.12971	3.5272200000000002	4.92473	0.0757903	0.00108255	0.194427	0.0300133
chr6	110882511	110882611	2939021	0	+	0.3	(0.28,0.32]	chr6	276765	65	INTRON	INTRON	AMD1	ENSG00000123505.19	ENST00000451850.6:ENST00000675380.1:ENST00000368882.8:ENST00000672937.2:ENST00000368885.8:ENST00000368877.9:ENST00000368876.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	118	2	2.94535	3.52719	4.10903	0.00213731	7.08337e-5	0.0417866	0.00695952
chr8	53984062	53984162	3952911	0	-	0.31	(0.28,0.32]	chr8	362521	3	SS5_PROX	SS5_PROX:INTRON	TCEA1	ENSG00000187735.15	ENST00000396401.7:ENST00000521604.7:ENST00000521086.6:ENST00000522635.5:ENST00000522397.5:ENST00000640382.1:ENST00000640041.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	75	2	1.45717	3.5271600000000003	5.59715	0.0472947	0.00123856	0.16913	0.0322669
chr22	16634249	16634348	7473689	0	+	0.373737	(0.35,0.378]	chr22	762000	110	INTRON	INTRON	TPTEP1	ENSG00000100181.22	ENST00000558085.6:ENST00000400593.6:ENST00000426585.5:ENST00000383140.7	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	4	123	2	2.56914	3.52692	4.4847	0.00254279	5.30927e-6	0.0448135	0.00159238
chr13	97249631	97249731	5518671	0	+	0.35	(0.32,0.35]	chr13	527710	267	INTRON	INTRON	MBNL2	ENSG00000139793.20	ENST00000397601.5:ENST00000343600.9:ENST00000376673.8:ENST00000679496.1:ENST00000685165.1:ENST00000345429.10:ENST00000469707.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	35	2	2.78073	3.526865	4.273	0.0368357	0.01481	0.138959	0.106702
chr17	45637959	45638051	6618307	0	+	0.336957	(0.32,0.35]	chr17	645451	1	INTRON	INTRON	LINC02210	ENSG00000204650.14	ENST00000591271.5:ENST00000586362.1	transcribed_unitary_pseudogene	processed_transcript	transcribed_unitary_pseudogene	processed_transcript	1	35	2	2.78073	3.526865	4.273	0.0368357	0.01481	0.138959	0.106702
chr20	535016	535116	7303893	0	-	0.34	(0.32,0.35]	chr20	743573	66	INTRON	INTRON	CSNK2A1	ENSG00000101266.19	ENST00000646561.1:ENST00000217244.9:ENST00000643660.1:ENST00000645623.1:ENST00000400227.8:ENST00000349736.10:ENST00000644170.1:ENST00000643700.1:ENST00000645910.1:ENST00000645840.1:ENST00000646305.1:ENST00000645260.1:ENST00000642689.1:ENST00000645234.1:ENST00000646814.1:ENST00000646477.1:ENST00000644885.1:ENST00000644710.1:ENST00000647155.1:ENST00000644003.1:ENST00000645249.1:ENST00000647026.1:ENST00000400217.7:ENST00000647348.1:ENST00000643600.1:ENST00000643680.1:ENST00000460062.7:ENST00000643968.1:ENST00000644177.1:ENST00000609525.2:ENST00000645091.1:ENST00000609606.6:ENST00000608066.6:ENST00000646908.1:ENST00000645187.1:ENST00000642160.1:ENST00000608490.2:ENST00000643910.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	35	2	2.78073	3.526865	4.273	0.0368357	0.01481	0.138959	0.106702
chr13	111179049	111179148	5544948	0	+	0.40404	(0.378,0.408]	chr13	529753	196	INTRON	INTRON	ARHGEF7	ENSG00000102606.19	ENST00000317133.9:ENST00000375739.6:ENST00000375741.6:ENST00000646102.2:ENST00000449979.5:ENST00000491775.5:ENST00000469877.5:ENST00000466143.5:ENST00000218789.9:ENST00000375736.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	35	2	2.53503	3.526785	4.51854	0.0319942	0.00748824	0.13174	0.0772645
chr22	41679943	41680043	7592039	0	-	0.4	(0.378,0.408]	chr22	777546	3	SS5_PROX	SS5_PROX:INTRON	SNU13	ENSG00000100138.15	ENST00000401959.6:ENST00000648674.1:ENST00000215956.10:ENST00000463675.6:ENST00000648350.1:ENST00000649479.1:ENST00000402458.1:ENST00000469028.2:ENST00000649722.1:ENST00000488571.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	35	2	2.53503	3.526785	4.51854	0.0319942	0.00748824	0.13174	0.0772645
chr4	2346298	2346397	2099005	0	-	0.383838	(0.378,0.408]	chr4	207724	29	INTRON	INTRON	ZFYVE28	ENSG00000159733.14	ENST00000290974.7:ENST00000511071.5:ENST00000515312.5:ENST00000515169.5:ENST00000509171.5:ENST00000503000.1:ENST00000508184.5:ENST00000504743.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	35	2	2.53503	3.526785	4.51854	0.0319942	0.00748824	0.13174	0.0772645
chr4	25801385	25801484	2120003	0	-	0.393939	(0.378,0.408]	chr4	209416	105	INTRON	INTRON	SEL1L3	ENSG00000091490.11	ENST00000264868.9:ENST00000399878.8:ENST00000502949.5	protein_coding	protein_coding	protein_coding	protein_coding	4	117	2	3.2565	3.52677	3.79704	3.6912e-4	4.6355e-5	0.0178272	0.00555027
chr1	16275634	16275734	381847	0	-	0.38	(0.378,0.408]	chr1	44869	185	INTRON	INTRON	FBXO42	ENSG00000037637.11	ENST00000375592.8	protein_coding	protein_coding	protein_coding	protein_coding	2	43	2	2.11103	3.526765	4.9425	0.0266911	0.00452675	0.134419	0.0595107
chr16	80985869	80985967	6530481	0	-	0.387755	(0.378,0.408]	chr16	632644	19	INTRON	INTRON	CMC2	ENSG00000103121.9	ENST00000219400.8:ENST00000563779.5:ENST00000486645.5:ENST00000570195.5:ENST00000566047.5:ENST00000561614.5:ENST00000566231.5:ENST00000569187.5:ENST00000570086.5:ENST00000564249.5:ENST00000565650.5:ENST00000567593.5:ENST00000568228.5:ENST00000565914.5:ENST00000565108.5:ENST00000565925.5:ENST00000564174.5:ENST00000565613.5:ENST00000569666.5:ENST00000562713.3:ENST00000562828.5:ENST00000630396.1:ENST00000565514.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	43	2	2.11103	3.526765	4.9425	0.0266911	0.00452675	0.134419	0.0595107
chr15	92912497	92912596	6103815	0	+	0.444444	(0.44,0.476]	chr15	581401	35	INTRON	INTRON	ENSG00000279765:CHD2	ENSG00000279765.3:ENSG00000173575.22	ENST00000629685.2:ENST00000630790.1:ENST00000626874.2:ENST00000394196.9:ENST00000635856.1:ENST00000420239.7:ENST00000628375.2:ENST00000625990.3:ENST00000626782.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	13	317	2	2.92727	3.526725	4.12618	3.1055e-6	3.27999e-7	0.00114061	3.12285e-4
chr1	155292596	155292676	560478	0	-	0.3875	(0.378,0.408]	chr1	66899	3	INTRON	INTRON	PKLR	ENSG00000143627.19	ENST00000342741.6:ENST00000392414.7	protein_coding	protein_coding	protein_coding	protein_coding	3	61	2	2.20712	3.526695	4.84627	0.00978751	0.00254319	0.0835427	0.0465056
chr7	882952	883050	3269173	0	+	0.397959	(0.378,0.408]	chr7	303674	43	INTRON	INTRON	SUN1:GET4	ENSG00000164828.18:ENSG00000239857.7	ENST00000457861.1:ENST00000265857.8:ENST00000412734.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	273	2	3.01526	3.526695	4.03813	5.3357e-5	4.51052e-8	0.00640949	8.74098e-5
chr2	55024785	55024885	1121150	0	-	0.23	[0,0.28]	chr2	120150	3	SS5_PROX	SS5_PROX:INTRON	RTN4	ENSG00000115310.19	ENST00000404909.5:ENST00000394611.6:ENST00000317610.11:ENST00000357732.8:ENST00000337526.11:ENST00000357376.7:ENST00000405240.5:ENST00000438462.1	protein_coding	protein_coding	protein_coding	protein_coding	3	74	2	2.50706	3.52658	4.5461	0.0365918	0.00338815	0.138959	0.0535583
chr5	54110007	54110106	2618907	0	-	0.323232	(0.32,0.35]	chr5	248841	341	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	84	2	1.38748	3.52657	5.66566	0.0373731	6.06695e-4	0.155878	0.0226059
chr16	1413246	1413345	6427969	0	-	0.434343	(0.408,0.44]	chr16	617882	61	INTRON	INTRON	UNKL	ENSG00000059145.19	ENST00000389221.9:ENST00000508903.7:ENST00000382757.9:ENST00000301712.5:ENST00000503648.1:ENST00000566707.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	35	2	2.71911	3.526555	4.334	0.0189489	0.011982	0.108861	0.0962115
chr17	82920464	82920555	6695937	0	+	0.417582	(0.408,0.44]	chr17	655038	4	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	TBCD	ENSG00000141556.22	ENST00000682479.1:ENST00000682722.1:ENST00000684464.1:ENST00000684544.1:ENST00000681983.1:ENST00000684361.1:ENST00000683184.1:ENST00000683282.1:ENST00000684408.1:ENST00000355528.9:ENST00000683444.1:ENST00000684776.1:ENST00000683041.1:ENST00000684760.1:ENST00000684349.1:ENST00000682213.1:ENST00000539345.6:ENST00000684000.1:ENST00000684188.1:ENST00000684429.1:ENST00000682610.1:ENST00000683821.1:ENST00000682654.1:ENST00000576160.6:ENST00000571712.5:ENST00000576996.5:ENST00000683584.1:ENST00000682099.1:ENST00000684559.1:ENST00000576760.5:ENST00000683839.1:ENST00000574975.5:ENST00000572953.5:ENST00000571796.5:ENST00000682315.1:ENST00000574422.1:ENST00000576677.6:ENST00000571618.5:ENST00000574886.2:ENST00000574818.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	35	2	2.71911	3.526555	4.334	0.0189489	0.011982	0.108861	0.0962115
chr4	109437384	109437484	2018606	0	+	0.42	(0.408,0.44]	chr4	200748	30	INTRON	INTRON	SEC24B	ENSG00000138802.11	ENST00000504968.6:ENST00000399100.6:ENST00000265175.5	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	2.71911	3.526555	4.334	0.0189489	0.011982	0.108861	0.0962115
chr6	169669805	169669901	3266800	0	-	0.427083	(0.408,0.44]	chr6	303233	4	EXON_MRNA	EXON_MRNA:INTRON	WDR27	ENSG00000184465.16	ENST00000448612.6:ENST00000648472.1:ENST00000423258.5:ENST00000647790.1:ENST00000647873.1:ENST00000649303.1:ENST00000647889.1:ENST00000648017.1:ENST00000496752.1:ENST00000650296.1:ENST00000546953.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	35	2	2.71911	3.526555	4.334	0.0189489	0.011982	0.108861	0.0962115
chr11	86946869	86946969	5015208	0	-	0.47	(0.44,0.476]	chr11	473062	13	UTR3	UTR3:EXON_MRNA	FZD4	ENSG00000174804.4	ENST00000531380.2	protein_coding	protein_coding	protein_coding	protein_coding	3	52	2	2.22103	3.526525	4.83202	0.00776319	0.00525002	0.0787356	0.0633615
chr11	64244569	64244661	4964696	0	-	0.608696	(0.57,1]	chr11	467319	2	UTR3	UTR3:EXON_MRNA	PPP1R14B	ENSG00000173457.11	ENST00000309318.8:ENST00000392210.6:ENST00000542235.1	protein_coding	protein_coding	protein_coding	protein_coding	6	94	2	3.44969	3.5265050000000002	3.60332	5.72554e-6	1.59253e-6	0.00177762	7.59456e-4
chr16	70403489	70403589	6511108	0	-	0.54	(0.515,0.57]	chr16	630689	20	INTRON	INTRON	ST3GAL2	ENSG00000157350.13	ENST00000342907.3:ENST00000566097.1:ENST00000561708.1:ENST00000567586.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	108	2	3.43598	3.52636	3.61674	7.05043e-5	3.351e-5	0.00694412	0.00488123
chr11	82913554	82913654	4839966	0	+	0.27	[0,0.28]	chr11	451418	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DDIAS	ENSG00000165490.13	ENST00000532277.5:ENST00000525361.5:ENST00000528759.5:ENST00000524921.5:ENST00000532764.5:ENST00000533655.6:ENST00000528189.5:ENST00000532589.5:ENST00000525388.5:ENST00000528262.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	43	2	2.27119	3.526305	4.78142	0.070351	0.00943974	0.184298	0.0861183
chr15	49181429	49181529	6019221	0	+	0.23	[0,0.28]	chr15	573674	105	INTRON	INTRON	GALK2	ENSG00000156958.15	ENST00000559883.5:ENST00000559963.5:ENST00000327171.7:ENST00000560654.5:ENST00000558775.5:ENST00000561074.5:ENST00000559040.1:ENST00000396509.6:ENST00000558956.5:ENST00000559208.5:ENST00000560031.6:ENST00000559095.1:ENST00000560119.5:ENST00000558145.5:ENST00000544523.5:ENST00000560138.5:ENST00000559423.5:ENST00000559454.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	53	2	2.10688	3.5262450000000003	4.94561	0.0307985	0.0150263	0.143385	0.0994339
chr1	90009491	90009587	160835	0	+	0.375	(0.35,0.378]	chr1	17323	14	INTRON	INTRON	ZNF326	ENSG00000162664.17	ENST00000340281.9:ENST00000394583.7:ENST00000370447.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	33	2	2.57049	3.5261649999999998	4.48184	0.0262669	0.0191702	0.133676	0.108861
chr10	91945745	91945844	4488950	0	+	0.353535	(0.35,0.378]	chr10	413306	28	INTRON	INTRON	BTAF1	ENSG00000095564.15	ENST00000265990.12	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	2.57049	3.5261649999999998	4.48184	0.0262669	0.0191702	0.133676	0.108861
chr13	113504987	113505085	5549310	0	+	0.377551	(0.35,0.378]	chr13	530298	15	UTR3	UTR3:EXON_MRNA:INTRON	TMCO3	ENSG00000150403.18	ENST00000434316.7:ENST00000375391.5:ENST00000474393.5:ENST00000462877.5:ENST00000622371.1	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	2.57049	3.5261649999999998	4.48184	0.0262669	0.0191702	0.133676	0.108861
chr16	80985967	80986066	6530482	0	-	0.353535	(0.35,0.378]	chr16	632644	20	INTRON	INTRON	CMC2	ENSG00000103121.9	ENST00000219400.8:ENST00000563779.5:ENST00000486645.5:ENST00000570195.5:ENST00000566047.5:ENST00000561614.5:ENST00000566231.5:ENST00000569187.5:ENST00000570086.5:ENST00000564249.5:ENST00000565650.5:ENST00000567593.5:ENST00000568228.5:ENST00000565914.5:ENST00000565108.5:ENST00000565925.5:ENST00000564174.5:ENST00000565613.5:ENST00000569666.5:ENST00000562713.3:ENST00000562828.5:ENST00000630396.1:ENST00000565514.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	33	2	2.57049	3.5261649999999998	4.48184	0.0262669	0.0191702	0.133676	0.108861
chr17	32845017	32845117	6756794	0	-	0.36	(0.35,0.378]	chr17	664075	148	INTRON	INTRON	MYO1D	ENSG00000176658.17	ENST00000318217.10:ENST00000394649.8:ENST00000579584.5:ENST00000583621.1	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	2.57049	3.5261649999999998	4.48184	0.0262669	0.0191702	0.133676	0.108861
chr3	15774770	15774870	1623588	0	-	0.37	(0.35,0.378]	chr3	168009	81	INTRON	INTRON	ANKRD28	ENSG00000206560.12	ENST00000399451.6:ENST00000624145.3:ENST00000683139.1:ENST00000412318.5:ENST00000497037.5:ENST00000451422.1:ENST00000498524.5:ENST00000439830.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	33	2	2.57049	3.5261649999999998	4.48184	0.0262669	0.0191702	0.133676	0.108861
chr5	31422046	31422126	2595869	0	-	0.3625	(0.35,0.378]	chr5	246537	2	SS3_PROX	SS3_PROX:INTRON	DROSHA	ENSG00000113360.17	ENST00000344624.8:ENST00000511367.6:ENST00000513349.5:ENST00000511778.5:ENST00000504133.5:ENST00000510178.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	33	2	2.57049	3.5261649999999998	4.48184	0.0262669	0.0191702	0.133676	0.108861
chr10	69169762	69169852	4445014	0	+	0.488889	(0.476,0.515]	chr10	410060	8	INTRON	INTRON	VPS26A	ENSG00000122958.15	ENST00000373382.5:ENST00000395098.5:ENST00000263559.11:ENST00000490696.5:ENST00000489794.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	32	2	2.80729	3.52615	4.24501	0.0247713	0.0126008	0.12011	0.0980703
chr6	7171860	7171960	2799006	0	+	0.49	(0.476,0.515]	chr6	263733	307	INTRON	INTRON	RREB1	ENSG00000124782.21	ENST00000379933.7:ENST00000491191.5:ENST00000471433.5:ENST00000379938.7:ENST00000467782.5:ENST00000349384.10:ENST00000334984.10:ENST00000475946.5:ENST00000483150.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	32	2	2.80729	3.52615	4.24501	0.0247713	0.0126008	0.12011	0.0980703
chr7	98934588	98934686	3359838	0	+	0.489796	(0.476,0.515]	chr7	313502	8	INTRON	INTRON	TRRAP	ENSG00000196367.14	ENST00000355540.7:ENST00000359863.8:ENST00000628380.2:ENST00000456197.2:ENST00000446306.7	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	2.80729	3.52615	4.24501	0.0247713	0.0126008	0.12011	0.0980703
chr13	79382406	79382506	5626171	0	-	0.33	(0.32,0.35]	chr13	536667	31	INTRON	INTRON	RBM26	ENSG00000139746.16	ENST00000438737.3:ENST00000438724.5:ENST00000622611.4:ENST00000267229.11:ENST00000472143.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	56	2	1.67393	3.52613	5.37833	0.0496128	0.00174321	0.174685	0.0375363
chr12	132091294	132091394	5250256	0	+	0.3	(0.28,0.32]	chr12	499294	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	EP400P1	ENSG00000185684.16	ENST00000407361.8:ENST00000446190.5:ENST00000690966.1:ENST00000689047.1:ENST00000454179.7:ENST00000689533.1:ENST00000688036.1:ENST00000688136.1:ENST00000488030.5:ENST00000389560.6:ENST00000689403.1:ENST00000443539.6:ENST00000392352.5:ENST00000539205.5:ENST00000332441.7	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	2	87	2	3.36855	3.526045	3.68354	0.00305882	5.5135e-4	0.0494118	0.0213455
chr10	29432673	29432773	4415018	0	+	0.37	(0.35,0.378]	chr10	407249	104	INTRON	INTRON	SVIL-AS1	ENSG00000224597.11	ENST00000430295.5:ENST00000684815.1:ENST00000413405.6:ENST00000646086.2:ENST00000423223.6:ENST00000414457.6:ENST00000686070.1:ENST00000687838.1:ENST00000445521.6:ENST00000686207.1:ENST00000446807.5:ENST00000438202.5:ENST00000455774.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	1	33	2	2.48657	3.5260350000000003	4.5655	0.032907	0.0155464	0.145164	0.100909
chr2	39110739	39110839	1102235	0	-	0.36	(0.35,0.378]	chr2	118304	124	INTRON	INTRON	SOS1	ENSG00000115904.15	ENST00000692089.1:ENST00000402219.8:ENST00000690876.1:ENST00000395038.6:ENST00000691229.1:ENST00000689668.1:ENST00000690679.1:ENST00000461545.2:ENST00000451331.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	33	2	2.48657	3.5260350000000003	4.5655	0.032907	0.0155464	0.145164	0.100909
chr4	2548353	2548453	1912633	0	+	0.37	(0.35,0.378]	chr4	191976	108	INTRON	INTRON	RNF4:FAM193A	ENSG00000063978.16:ENSG00000125386.16	ENST00000508235.1:ENST00000637812.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	33	2	2.48657	3.5260350000000003	4.5655	0.032907	0.0155464	0.145164	0.100909
chr5	177204989	177205088	2554416	0	+	0.353535	(0.35,0.378]	chr5	243952	3	INTRON	INTRON	NSD1	ENSG00000165671.22	ENST00000508896.6:ENST00000689549.1:ENST00000354179.9:ENST00000686993.1:ENST00000689326.1:ENST00000439151.7:ENST00000510954.6:ENST00000689345.1:ENST00000347982.9:ENST00000687453.1:ENST00000685206.1:ENST00000638627.3:ENST00000644863.2:ENST00000688613.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	33	2	2.48657	3.5260350000000003	4.5655	0.032907	0.0155464	0.145164	0.100909
chr7	73545034	73545133	3555197	0	-	0.363636	(0.35,0.378]	chr7	330846	10	INTRON	INTRON	BCL7B	ENSG00000106635.8	ENST00000223368.7:ENST00000411832.5:ENST00000482231.5:ENST00000454871.5:ENST00000463858.5:ENST00000448175.5:ENST00000455335.2:ENST00000464288.5:ENST00000416906.2:ENST00000493592.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	33	2	2.48657	3.5260350000000003	4.5655	0.032907	0.0155464	0.145164	0.100909
chr8	105348596	105348696	3837541	0	+	0.46	(0.44,0.476]	chr8	354033	285	INTRON	INTRON	ZFPM2	ENSG00000169946.14	ENST00000518180.1:ENST00000407775.7:ENST00000520492.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	81	2	1.17605	3.52584	5.87563	0.060782	8.84961e-5	0.192641	0.00842626
chr1	45616803	45616882	93554	0	+	0.392405	(0.378,0.408]	chr1	12649	1	SS5_PROX	SS5_PROX:INTRON	NASP	ENSG00000132780.17	ENST00000537798.5:ENST00000350030.8:ENST00000372052.8:ENST00000351223.7:ENST00000530073.5:ENST00000481782.1:ENST00000531612.5:ENST00000534450.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	36	2	2.72993	3.525835	4.32174	0.0188736	0.0132362	0.108861	0.0999551
chr12	68819752	68819852	5163092	0	+	0.45	(0.44,0.476]	chr12	488901	4	SS3_PROX	SS3_PROX:INTRON	MDM2	ENSG00000135679.27	ENST00000258149.11:ENST00000393412.7:ENST00000311420.13:ENST00000393417.8:ENST00000258148.11:ENST00000539479.6:ENST00000523991.5:ENST00000543323.5:ENST00000393415.7:ENST00000393416.7:ENST00000481186.6:ENST00000545204.2:ENST00000544561.6:ENST00000665020.1:ENST00000666617.1:ENST00000671567.1:ENST00000393410.5:ENST00000496959.5:ENST00000299252.8:ENST00000360430.6:ENST00000517852.5:ENST00000546048.5:ENST00000540352.5:ENST00000542502.5:ENST00000537182.5:ENST00000536089.5:ENST00000393413.7:ENST00000350057.9:ENST00000348801.7:ENST00000478070.2:ENST00000471946.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	43	2	2.44514	3.525805	4.60647	0.0102339	0.0087381	0.0850389	0.0845538
chr2	97240465	97240565	832169	0	+	0.46	(0.44,0.476]	chr2	93233	62	INTRON	INTRON	ANKRD36	ENSG00000135976.21	ENST00000420699.9:ENST00000652721.1:ENST00000461153.7:ENST00000421946.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	43	2	2.44514	3.525805	4.60647	0.0102339	0.0087381	0.0850389	0.0845538
chr5	112866099	112866196	2453048	0	+	0.443299	(0.44,0.476]	chr5	235038	10	INTRON	INTRON	SRP19	ENSG00000153037.15	ENST00000503445.5:ENST00000505459.6:ENST00000506997.2:ENST00000391338.3:ENST00000282999.7:ENST00000515463.1:ENST00000621420.5:ENST00000506987.1:ENST00000509024.2:ENST00000504696.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	43	2	2.44514	3.525805	4.60647	0.0102339	0.0087381	0.0850389	0.0845538
chr1	21739510	21739609	396420	0	-	0.212121	[0,0.28]	chr1	47304	25	INTRON	INTRON	USP48	ENSG00000090686.16	ENST00000400301.5:ENST00000308271.14:ENST00000529637.5:ENST00000421625.6:ENST00000374730.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	39	2	2.5055	3.5258000000000003	4.5461	0.0365918	0.0359431	0.152322	0.138959
chr1	52420539	52420638	103871	0	+	0.262626	[0,0.28]	chr1	13629	40	UTR3	UTR3:EXON_MRNA	PRPF38A	ENSG00000134748.13	ENST00000257181.10	protein_coding	protein_coding	protein_coding	protein_coding	1	39	2	2.5055	3.5258000000000003	4.5461	0.0365918	0.0359431	0.152322	0.138959
chr13	99528569	99528668	5527147	0	+	0.272727	[0,0.28]	chr13	528351	81	INTRON	INTRON	TM9SF2	ENSG00000125304.10	ENST00000642475.1:ENST00000376387.5:ENST00000463709.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	39	2	2.5055	3.5258000000000003	4.5461	0.0365918	0.0359431	0.152322	0.138959
chr2	158480998	158481098	897380	0	+	0.21	[0,0.28]	chr2	99341	223	INTRON	INTRON	PKP4	ENSG00000144283.23	ENST00000389759.8:ENST00000426248.7:ENST00000389757.7:ENST00000457109.5:ENST00000452162.5:ENST00000411900.5:ENST00000421462.5:ENST00000462335.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	39	2	2.5055	3.5258000000000003	4.5461	0.0365918	0.0359431	0.152322	0.138959
chr2	179958321	179958421	1282668	0	-	0.24	[0,0.28]	chr2	135095	29	INTRON	INTRON	CWC22	ENSG00000163510.14	ENST00000410053.8:ENST00000404136.2	protein_coding	protein_coding	protein_coding	protein_coding	1	39	2	2.5055	3.5258000000000003	4.5461	0.0365918	0.0359431	0.152322	0.138959
chr21	36356319	36356419	7404063	0	+	0.25	[0,0.28]	chr21	754329	3	SS3_PROX	SS3_PROX:INTRON	MORC3	ENSG00000159256.13	ENST00000400485.6:ENST00000487909.5:ENST00000485299.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	39	2	2.5055	3.5258000000000003	4.5461	0.0365918	0.0359431	0.152322	0.138959
chr5	160402993	160403090	2759888	0	-	0.257732	[0,0.28]	chr5	260465	15	UTR3	UTR3:EXON_MRNA	SLU7	ENSG00000164609.10	ENST00000297151.9	protein_coding	protein_coding	protein_coding	protein_coding	1	39	2	2.5055	3.5258000000000003	4.5461	0.0365918	0.0359431	0.152322	0.138959
chr10	42548256	42548356	4603810	0	-	0.28	[0,0.28]	chr10	424114	222	INTRON	INTRON	ZNF37BP	ENSG00000234420.8	ENST00000452075.7:ENST00000692055.1:ENST00000689225.1:ENST00000686311.1:ENST00000686673.1:ENST00000688789.1:ENST00000690905.1:ENST00000435805.7:ENST00000687308.1:ENST00000692559.1:ENST00000690442.1:ENST00000473592.1:ENST00000691808.1:ENST00000692594.1:ENST00000691366.1:ENST00000689409.1:ENST00000685241.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	1	44	2	2.49527	3.5257250000000004	4.55618	0.0436497	0.0171034	0.14882	0.110899
chr3	138823714	138823814	1831390	0	-	0.24	[0,0.28]	chr3	184062	268	INTRON	INTRON	PIK3CB	ENSG00000051382.9	ENST00000674063.1:ENST00000477593.5:ENST00000462898.5:ENST00000483968.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	44	2	2.49527	3.5257250000000004	4.55618	0.0436497	0.0171034	0.14882	0.110899
chr11	68495860	68495960	4817684	0	+	0.41	(0.408,0.44]	chr11	448907	347	INTRON	INTRON	PPP6R3	ENSG00000110075.15	ENST00000530427.5:ENST00000528635.5:ENST00000529907.5:ENST00000533127.5:ENST00000534534.5:ENST00000529344.5:ENST00000524845.5:ENST00000393800.7:ENST00000265637.8:ENST00000524904.5:ENST00000393801.7:ENST00000265636.9:ENST00000529710.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	32	2	2.82042	3.52569	4.23096	0.0278028	0.0120121	0.123904	0.0962115
chr9	87727309	87727407	4151984	0	+	0.428571	(0.408,0.44]	chr9	378687	19	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CTSL	ENSG00000135047.16	ENST00000678442.1:ENST00000679149.1:ENST00000679157.1:ENST00000676946.1:ENST00000676531.1:ENST00000677935.1:ENST00000677345.1:ENST00000677821.1:ENST00000678752.1:ENST00000677019.1:ENST00000343150.10:ENST00000678367.1:ENST00000677864.1:ENST00000482054.2:ENST00000342020.6:ENST00000677262.1:ENST00000678649.1:ENST00000679141.1:ENST00000676881.1:ENST00000340342.11:ENST00000495822.2:ENST00000677955.1:ENST00000676769.1:ENST00000679030.1:ENST00000678596.1:ENST00000676961.1:ENST00000676576.1:ENST00000678599.1:ENST00000677638.1:ENST00000677615.1:ENST00000679252.1:ENST00000676466.1:ENST00000677349.1:ENST00000677761.1:ENST00000678654.1:ENST00000676480.1:ENST00000678965.1:ENST00000676909.1:ENST00000679028.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	32	2	2.82042	3.52569	4.23096	0.0278028	0.0120121	0.123904	0.0962115
chrX	120143788	120143888	7875024	0	-	0.42	(0.408,0.44]	chrX	802052	62	INTRON	INTRON	NKAPP1	ENSG00000233382.8	ENST00000555168.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	1	32	2	2.82042	3.52569	4.23096	0.0278028	0.0120121	0.123904	0.0962115
chr19	3409996	3410095	7000061	0	+	0.525253	(0.515,0.57]	chr19	694173	274	INTRON	INTRON	NFIC	ENSG00000141905.19	ENST00000641145.1:ENST00000589123.5:ENST00000395111.7:ENST00000586919.5:ENST00000341919.7:ENST00000443272.3:ENST00000590282.5	protein_coding	protein_coding	protein_coding	protein_coding	4	97	2	3.20527	3.52555	3.84583	1.82082e-4	4.73488e-5	0.0122264	0.00562068
chr3	142730703	142730803	1527857	0	+	0.28	[0,0.28]	chr3	159190	56	INTRON	INTRON	TRPC1	ENSG00000144935.16	ENST00000476941.6:ENST00000273482.10:ENST00000460401.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	39	2	2.29142	3.52553	4.75964	0.0592143	0.0232081	0.189982	0.118148
chr7	73511551	73511651	3554993	0	-	0.28	[0,0.28]	chr7	330813	3	INTRON	INTRON	BAZ1B	ENSG00000009954.11	ENST00000339594.9:ENST00000404251.1	protein_coding	protein_coding	protein_coding	protein_coding	1	39	2	2.29142	3.52553	4.75964	0.0592143	0.0232081	0.189982	0.118148
chr7	152051907	152052007	3449773	0	+	0.27	[0,0.28]	chr7	322435	238	INTRON	INTRON	GALNT11	ENSG00000178234.13	ENST00000430044.7:ENST00000482812.1:ENST00000431668.1:ENST00000446096.5:ENST00000447778.5:ENST00000423337.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	65	2	1.99345	3.525465	5.05748	0.0211881	0.0113653	0.123133	0.0886611
chr11	18102234	18102333	4931713	0	-	0.50505	(0.476,0.515]	chr11	461716	50	INTRON	INTRON	SAAL1	ENSG00000166788.10	ENST00000524803.6:ENST00000300013.8:ENST00000531581.5:ENST00000532452.5:ENST00000529318.5:ENST00000533851.5:ENST00000530180.1:ENST00000530736.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	32	2	2.28264	3.525455	4.76827	0.0534132	0.00600704	0.179876	0.0674604
chr19	40358045	40358144	7068979	0	+	0.515152	(0.476,0.515]	chr19	706105	89	INTRON	INTRON	PLD3	ENSG00000105223.20	ENST00000599685.5:ENST00000600479.5:ENST00000392032.6:ENST00000598962.5:ENST00000409419.5:ENST00000409587.5:ENST00000602131.5:ENST00000594085.5:ENST00000409735.9:ENST00000356508.9:ENST00000600948.5:ENST00000594908.5:ENST00000596682.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	32	2	2.28264	3.525455	4.76827	0.0534132	0.00600704	0.179876	0.0674604
chr5	140681639	140681735	2738372	0	-	0.479167	(0.476,0.515]	chr5	257964	14	INTRON	INTRON	HARS1	ENSG00000170445.16	ENST00000431330.7:ENST00000675366.1:ENST00000674523.1:ENST00000676327.1:ENST00000675094.1:ENST00000506579.6:ENST00000675851.1:ENST00000675698.1:ENST00000675763.1:ENST00000675967.1:ENST00000675355.1:ENST00000457527.6:ENST00000675827.1:ENST00000504156.7:ENST00000307633.7:ENST00000504366.5:ENST00000509087.2:ENST00000438307.6:ENST00000512396.6:ENST00000645491.1:ENST00000675204.1:ENST00000643686.1:ENST00000646229.1:ENST00000507746.7:ENST00000415192.6:ENST00000518126.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	32	2	2.28264	3.525455	4.76827	0.0534132	0.00600704	0.179876	0.0674604
chr8	126282594	126282694	4051458	0	-	0.49	(0.476,0.515]	chr8	369353	1692	INTRON	INTRON	LINC00861	ENSG00000245164.9	ENST00000651482.1	lncRNA	lncRNA	lncRNA	lncRNA	3	56	2	2.05714	3.5252800000000004	4.99342	0.0156961	0.00139274	0.101453	0.0341261
chr11	3017575	3017669	4892180	0	-	0.489362	(0.476,0.515]	chr11	458429	4	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CARS1	ENSG00000110619.18	ENST00000397111.9:ENST00000531387.5:ENST00000380525.9:ENST00000278224.13:ENST00000529772.5:ENST00000526890.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	45	2	1.99197	3.52522	5.05847	0.039572	0.00108081	0.143072	0.0300133
chr9	130866932	130867031	4215396	0	+	0.444444	(0.44,0.476]	chr9	386448	35	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000318560.6	protein_coding	protein_coding	protein_coding	protein_coding	2	43	2	1.85146	3.5251300000000003	5.1988	0.0545846	0.00151532	0.182529	0.0352794
chr3	25751663	25751763	1642521	0	-	0.38	(0.378,0.408]	chr3	168665	4	SS3_PROX	SS3_PROX:INTRON	NGLY1	ENSG00000151092.18	ENST00000280700.10:ENST00000428257.5:ENST00000675217.1:ENST00000676225.1:ENST00000493324.5:ENST00000396649.7:ENST00000308710.9:ENST00000280699.13:ENST00000674841.1:ENST00000675234.1:ENST00000463611.2:ENST00000417874.6:ENST00000427041.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	54	2	2.31181	3.5251	4.73839	0.00837252	0.00548372	0.0774402	0.0671431
chr1	197116692	197116792	613392	0	-	0.27	[0,0.28]	chr1	72605	112	INTRON	INTRON	ASPM	ENSG00000066279.19	ENST00000367408.6:ENST00000367409.9:ENST00000680265.1:ENST00000294732.11:ENST00000680710.1:ENST00000681879.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	61	2	2.1357	3.52492	4.91414	0.0338175	0.0064519	0.134476	0.0730725
chr16	89363776	89363876	6542318	0	-	0.6	(0.57,1]	chr16	634225	17	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000647238.1:ENST00000644045.1:ENST00000643147.1:ENST00000644139.1:ENST00000568512.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	83	2	2.43863	3.52488	4.61113	2.75362e-4	4.61904e-7	0.0147997	3.89551e-4
chr1	12187099	12187198	27991	0	+	0.424242	(0.408,0.44]	chr1	3320	196	INTRON	INTRON	TNFRSF1B	ENSG00000028137.19	ENST00000376259.7:ENST00000492361.1:ENST00000536782.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	32	2	2.2957	3.52484	4.75398	0.0516458	0.00703931	0.176696	0.0718189
chr1	41236366	41236466	430771	0	-	0.43	(0.408,0.44]	chr1	52255	498	INTRON	INTRON	SCMH1	ENSG00000010803.17	ENST00000695335.1:ENST00000372596.5:ENST00000372597.5:ENST00000337495.9:ENST00000488592.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	32	2	2.2957	3.52484	4.75398	0.0516458	0.00703931	0.176696	0.0718189
chr2	127751042	127751142	1225273	0	-	0.43	(0.408,0.44]	chr2	130486	126	INTRON	INTRON	WDR33	ENSG00000136709.12	ENST00000322313.9:ENST00000436787.5:ENST00000393006.5	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	2.2957	3.52484	4.75398	0.0516458	0.00703931	0.176696	0.0718189
chr2	233843304	233843404	1343744	0	-	0.44	(0.408,0.44]	chr2	140828	7	INTRON	INTRON	HJURP	ENSG00000123485.12	ENST00000432087.5:ENST00000441687.5:ENST00000411486.7:ENST00000414924.5:ENST00000454020.1:ENST00000434039.1:ENST00000453122.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	32	2	2.2957	3.52484	4.75398	0.0516458	0.00703931	0.176696	0.0718189
chr22	41639476	41639575	7524371	0	+	0.414141	(0.408,0.44]	chr22	769084	13	INTRON	INTRON	XRCC6	ENSG00000196419.13	ENST00000428575.6:ENST00000402580.7:ENST00000360079.8:ENST00000359308.8:ENST00000405878.5:ENST00000405506.2	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	2.2957	3.52484	4.75398	0.0516458	0.00703931	0.176696	0.0718189
chr9	92308208	92308306	4287473	0	-	0.438776	(0.408,0.44]	chr9	394318	8	INTRON	INTRON	NOL8	ENSG00000198000.12	ENST00000442668.7:ENST00000358855.8:ENST00000545444.5:ENST00000536593.5:ENST00000545558.5:ENST00000360868.7:ENST00000544867.5:ENST00000542053.5:ENST00000535387.5:ENST00000477862.1:ENST00000432670.6:ENST00000434228.5:ENST00000538802.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	32	2	2.2957	3.52484	4.75398	0.0516458	0.00703931	0.176696	0.0718189
chrX	65730012	65730112	7671714	0	+	0.41	(0.408,0.44]	chrX	785163	3	SS5_PROX	SS5_PROX:INTRON	MSN	ENSG00000147065.17	ENST00000360270.7	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	2.2957	3.52484	4.75398	0.0516458	0.00703931	0.176696	0.0718189
chr8	140634289	140634388	4076554	0	-	0.686869	(0.57,1]	chr8	370289	71	INTRON	INTRON	AGO2	ENSG00000123908.12	ENST00000220592.10:ENST00000519980.5:ENST00000523609.5:ENST00000517293.5:ENST00000518019.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	29	2	1.91937	3.52479	5.13021	0.0468438	1.21664e-4	0.167716	0.00992813
chr9	124670307	124670407	4348205	0	-	0.45	(0.44,0.476]	chr9	399255	746	INTRON	INTRON	NR6A1	ENSG00000148200.17	ENST00000487099.7:ENST00000373584.7:ENST00000416460.6:ENST00000344523.8	protein_coding	protein_coding	protein_coding	protein_coding	2	48	2	2.42996	3.52475	4.61954	0.0104804	0.00506805	0.0855777	0.0646039
chr2	216511358	216511458	1016201	0	+	0.47	(0.44,0.476]	chr2	108187	74	INTRON	INTRON	RPL37A	ENSG00000197756.10	ENST00000600880.5:ENST00000446558.5:ENST00000598925.5:ENST00000427280.6:ENST00000441179.2	protein_coding	protein_coding	protein_coding	protein_coding	4	60	2	2.08453	3.52472	4.96491	0.00689	0.0034249	0.0750118	0.0517761
chr1	193167790	193167890	285079	0	+	0.3	(0.28,0.32]	chr1	32819	62	INTRON	INTRON	CDC73	ENSG00000134371.14	ENST00000649895.1:ENST00000643006.1:ENST00000367435.5:ENST00000650197.1:ENST00000648071.1:ENST00000635846.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	88	2	3.12332	3.5246250000000003	3.92593	0.00698537	1.77822e-4	0.0718189	0.0116289
chr12	96280141	96280241	5394053	0	-	0.46	(0.44,0.476]	chr12	514355	20	UTR3	UTR3:EXON_MRNA	CDK17	ENSG00000059758.8	ENST00000261211.8	protein_coding	protein_coding	protein_coding	protein_coding	4	111	2	3.04073	3.52459	4.00845	1.55969e-4	1.1799e-4	0.0106835	0.00984015
chr1	180973700	180973799	595849	0	-	0.393939	(0.378,0.408]	chr1	71216	11	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	STX6	ENSG00000135823.14	ENST00000542060.5:ENST00000258301.6:ENST00000469135.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	32	2	2.54849	3.524525	4.50056	0.0273196	0.015974	0.136494	0.101453
chr10	73478560	73478623	4649978	0	-	0.396825	(0.378,0.408]	chr10	427914	2	CDS	CDS:EXON_MRNA	PPP3CB	ENSG00000107758.16	ENST00000360663.10:ENST00000394828.6:ENST00000394829.6:ENST00000342558.3	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	2.54849	3.524525	4.50056	0.0273196	0.015974	0.136494	0.101453
chr14	61714502	61714597	5905801	0	-	0.378947	(0.378,0.408]	chr14	561049	1	INTRON	INTRON	HIF1A-AS3	ENSG00000258667.2	ENST00000660325.1	lncRNA	lncRNA	lncRNA	lncRNA	1	32	2	2.54849	3.524525	4.50056	0.0273196	0.015974	0.136494	0.101453
chr15	90222859	90222958	6098327	0	+	0.40404	(0.378,0.408]	chr15	580462	7	INTRON	INTRON	SEMA4B	ENSG00000185033.15	ENST00000332496.10:ENST00000411539.7:ENST00000560089.5:ENST00000558065.1:ENST00000558975.1:ENST00000559074.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	32	2	2.54849	3.524525	4.50056	0.0273196	0.015974	0.136494	0.101453
chr19	42213184	42213281	7186033	0	-	0.391753	(0.378,0.408]	chr19	727065	8	INTRON	INTRON	DEDD2	ENSG00000160570.14	ENST00000596251.6:ENST00000336034.8:ENST00000595337.5:ENST00000593804.5:ENST00000601135.5:ENST00000598415.5:ENST00000602075.5:ENST00000600559.5:ENST00000598090.5:ENST00000598727.5:ENST00000593561.5:ENST00000602201.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	32	2	2.54849	3.524525	4.50056	0.0273196	0.015974	0.136494	0.101453
chr2	120254630	120254730	860122	0	+	0.4	(0.378,0.408]	chr2	96494	5	INTRON	INTRON	RALB	ENSG00000144118.14	ENST00000447591.5:ENST00000420510.5:ENST00000431732.5:ENST00000272519.10:ENST00000631312.2:ENST00000470417.1:ENST00000412383.5:ENST00000449649.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	32	2	2.54849	3.524525	4.50056	0.0273196	0.015974	0.136494	0.101453
chr20	38065282	38065381	7269197	0	+	0.383838	(0.378,0.408]	chr20	738703	54	INTRON	INTRON	RPRD1B	ENSG00000101413.12	ENST00000462548.6:ENST00000373433.9:ENST00000449186.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	32	2	2.54849	3.524525	4.50056	0.0273196	0.015974	0.136494	0.101453
chr20	43705458	43705558	7276447	0	+	0.39	(0.378,0.408]	chr20	739764	1	SS5_PROX	SS5_PROX:INTRON	MYBL2	ENSG00000101057.16	ENST00000396863.8:ENST00000217026.5	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	2.54849	3.524525	4.50056	0.0273196	0.015974	0.136494	0.101453
chr22	46934026	46934126	7536914	0	+	0.39	(0.378,0.408]	chr22	770616	202	INTRON	INTRON	TBC1D22A	ENSG00000054611.14	ENST00000380995.5:ENST00000337137.9:ENST00000407381.7:ENST00000355704.7:ENST00000394449.6:ENST00000441162.5:ENST00000406733.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	32	2	2.54849	3.524525	4.50056	0.0273196	0.015974	0.136494	0.101453
chr4	127922282	127922382	2238118	0	-	0.39	(0.378,0.408]	chr4	219045	3	SS3_PROX	SS3_PROX:INTRON	MFSD8	ENSG00000164073.11	ENST00000296468.8:ENST00000641686.2:ENST00000641186.1:ENST00000641774.1:ENST00000641748.1:ENST00000641508.1:ENST00000641690.1:ENST00000641928.1:ENST00000641464.1:ENST00000641092.1:ENST00000641397.1:ENST00000641393.1:ENST00000641025.1:ENST00000641509.1:ENST00000642034.1:ENST00000641178.1:ENST00000641147.1:ENST00000641753.1:ENST00000641434.1:ENST00000641482.1:ENST00000641133.1:ENST00000641146.1:ENST00000641413.1:ENST00000641869.1:ENST00000515130.6:ENST00000641332.1:ENST00000641870.1:ENST00000641949.1:ENST00000641228.1:ENST00000641590.1:ENST00000641843.1:ENST00000642078.1:ENST00000641882.1:ENST00000641742.1:ENST00000641658.1:ENST00000513559.6:ENST00000642012.1:ENST00000509826.2:ENST00000642042.1:ENST00000641340.1:ENST00000641388.1:ENST00000641830.1:ENST00000641538.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	32	2	2.54849	3.524525	4.50056	0.0273196	0.015974	0.136494	0.101453
chr10	92693946	92694046	4491376	0	+	0.32	(0.28,0.32]	chr10	413679	8	INTRON	INTRON	HHEX	ENSG00000152804.11	ENST00000282728.10:ENST00000472590.6:ENST00000492654.3	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	2.46018	3.524465	4.58875	0.0375904	0.0230574	0.156054	0.118056
chr13	19861798	19861898	5553339	0	-	0.32	(0.28,0.32]	chr13	530769	93	INTRON	INTRON	ZMYM5	ENSG00000132950.19	ENST00000337963.9:ENST00000535942.5:ENST00000382907.8:ENST00000382905.8:ENST00000467542.5:ENST00000495534.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	36	2	2.46018	3.524465	4.58875	0.0375904	0.0230574	0.156054	0.118056
chr16	75043362	75043462	6389862	0	+	0.32	(0.28,0.32]	chr16	614482	406	INTRON	INTRON	ZNRF1	ENSG00000186187.12	ENST00000335325.9:ENST00000320619.10:ENST00000567962.5:ENST00000566250.5:ENST00000564320.1:ENST00000568511.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	36	2	2.46018	3.524465	4.58875	0.0375904	0.0230574	0.156054	0.118056
chr17	46203586	46203686	6784980	0	-	0.29	(0.28,0.32]	chr17	669254	98	INTRON	INTRON	KANSL1	ENSG00000120071.15	ENST00000574590.6:ENST00000572904.6:ENST00000575318.6:ENST00000648792.1:ENST00000639150.1:ENST00000639375.1:ENST00000638269.1:ENST00000639356.1:ENST00000574655.6:ENST00000639099.1:ENST00000638902.1:ENST00000576739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	36	2	2.46018	3.524465	4.58875	0.0375904	0.0230574	0.156054	0.118056
chr5	140482079	140482179	2503644	0	+	0.3	(0.28,0.32]	chr5	239225	1	SS3_PROX	SS3_PROX:INTRON	ANKHD1	ENSG00000131503.21	ENST00000297183.10:ENST00000360839.7:ENST00000421134.5:ENST00000246149.10	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	2.46018	3.524465	4.58875	0.0375904	0.0230574	0.156054	0.118056
chr6	47485692	47485792	2873642	0	+	0.3	(0.28,0.32]	chr6	272723	71	INTRON	INTRON	CD2AP	ENSG00000198087.7	ENST00000359314.5	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	2.46018	3.524465	4.58875	0.0375904	0.0230574	0.156054	0.118056
chr7	117055153	117055253	3387009	0	+	0.29	(0.28,0.32]	chr7	317151	318	INTRON	INTRON	ST7:ST7-OT4	ENSG00000004866.22:ENSG00000214188.9	ENST00000393446.6:ENST00000265437.9:ENST00000393451.7:ENST00000438863.5:ENST00000393449.5:ENST00000443979.5:ENST00000323984.8:ENST00000417919.5:ENST00000446490.5:ENST00000471110.5:ENST00000422922.5:ENST00000432298.5:ENST00000449366.5:ENST00000487459.5:ENST00000393443.5:ENST00000467538.5:ENST00000434836.5:ENST00000465133.5:ENST00000477742.5:ENST00000462544.1:ENST00000393444.7:ENST00000393447.8	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:nonsense_mediated_decay:lncRNA:processed_transcript	1	36	2	2.46018	3.524465	4.58875	0.0375904	0.0230574	0.156054	0.118056
chr20	5957927	5958027	7230112	0	+	0.25	[0,0.28]	chr20	734739	3	INTRON	INTRON	MCM8	ENSG00000125885.13	ENST00000610722.4:ENST00000378883.5:ENST00000378896.7:ENST00000378886.6:ENST00000265187.4	protein_coding	protein_coding	protein_coding	protein_coding	4	84	2	1.60899	3.5243349999999998	5.43968	0.0503341	0.00113119	0.156383	0.0308465
chr2	110671663	110671762	1206804	0	-	0.262626	[0,0.28]	chr2	128720	7	INTRON	INTRON	BUB1	ENSG00000169679.15	ENST00000302759.11:ENST00000535254.6:ENST00000409311.5:ENST00000466333.5:ENST00000666956.1:ENST00000465029.5:ENST00000447014.5:ENST00000420328.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	54	2	2.28885	3.524245	4.75964	0.0232081	0.0181093	0.118148	0.114853
chr20	34418681	34418781	7259674	0	+	0.25	[0,0.28]	chr20	737452	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	ITCH	ENSG00000078747.16	ENST00000374864.10:ENST00000535650.7:ENST00000670516.1:ENST00000658310.1:ENST00000665484.1:ENST00000664852.1:ENST00000660337.1:ENST00000665428.1:ENST00000262650.10:ENST00000662871.1:ENST00000665346.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	54	2	2.28885	3.524245	4.75964	0.0232081	0.0181093	0.118148	0.114853
chr1	179122267	179122367	591998	0	-	0.4	(0.378,0.408]	chr1	71054	4	SS3_PROX	SS3_PROX:INTRON	ABL2	ENSG00000143322.21	ENST00000502732.6:ENST00000344730.7:ENST00000512653.5:ENST00000367623.8:ENST00000507173.5:ENST00000511413.5:ENST00000504405.5:ENST00000668691.1:ENST00000392043.4:ENST00000509520.5:ENST00000504324.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	43	2	2.23831	3.523995	4.80968	0.0179575	0.00679828	0.114265	0.0711802
chr10	35518612	35518711	4426334	0	+	0.393939	(0.378,0.408]	chr10	407937	16	INTRON	INTRON	CCNY	ENSG00000108100.18	ENST00000374706.5:ENST00000493157.6:ENST00000374704.8:ENST00000265375.13:ENST00000339497.7:ENST00000492478.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	43	2	2.23831	3.523995	4.80968	0.0179575	0.00679828	0.114265	0.0711802
chr12	104123125	104123225	5402140	0	-	0.38	(0.378,0.408]	chr12	515347	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	NFYB	ENSG00000120837.8	ENST00000240055.8:ENST00000551446.6:ENST00000551727.5:ENST00000550189.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	43	2	2.23831	3.523995	4.80968	0.0179575	0.00679828	0.114265	0.0711802
chr3	128730556	128730656	1497254	0	+	0.39	(0.378,0.408]	chr3	156330	38	INTRON	INTRON	RAB7A	ENSG00000075785.14	ENST00000676214.1:ENST00000675864.1:ENST00000675712.1:ENST00000676425.1:ENST00000490093.6:ENST00000675342.1:ENST00000265062.8:ENST00000674748.1:ENST00000493186.6:ENST00000482525.5:ENST00000491681.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	43	2	2.23831	3.523995	4.80968	0.0179575	0.00679828	0.114265	0.0711802
chr7	65890543	65890643	3323050	0	+	0.4	(0.378,0.408]	chr7	309012	166	INTRON	INTRON	VKORC1L1	ENSG00000196715.7	ENST00000360768.5:ENST00000648187.1:ENST00000648179.1:ENST00000434382.2	protein_coding	protein_coding	protein_coding	protein_coding	2	43	2	2.23831	3.523995	4.80968	0.0179575	0.00679828	0.114265	0.0711802
chr15	72509701	72509801	6059515	0	+	0.43	(0.408,0.44]	chr15	576858	125	INTRON	INTRON	ARIH1	ENSG00000166233.15	ENST00000379887.9:ENST00000570085.5:ENST00000564062.1:ENST00000567762.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	52	2	2.22268	3.5239900000000004	4.8253	0.00770925	0.0056738	0.0784002	0.0653997
chr1	51457235	51457335	453726	0	-	0.39	(0.378,0.408]	chr1	54395	87	INTRON	INTRON	EPS15	ENSG00000085832.17	ENST00000371733.8:ENST00000371730.6	protein_coding	protein_coding	protein_coding	protein_coding	3	97	2	2.92509	3.52394	4.12279	0.00167715	3.95714e-5	0.0370386	0.00509892
chr11	110239842	110239942	5040751	0	-	0.4	(0.378,0.408]	chr11	474680	18	INTRON	INTRON	RDX	ENSG00000137710.17	ENST00000645527.1:ENST00000530749.5:ENST00000528498.5:ENST00000528900.5:ENST00000530301.5:ENST00000647231.1:ENST00000646663.1:ENST00000645495.2:ENST00000544551.5:ENST00000530131.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	44	2	2.46345	3.52386	4.58427	0.0128325	0.00827342	0.0926667	0.0813266
chr16	75570008	75570108	6391066	0	+	0.39	(0.378,0.408]	chr16	614584	14	INTRON	INTRON	GABARAPL2	ENSG00000034713.8	ENST00000037243.7:ENST00000563744.1:ENST00000568455.1	protein_coding	protein_coding	protein_coding	protein_coding	2	44	2	2.46345	3.52386	4.58427	0.0128325	0.00827342	0.0926667	0.0813266
chr15	101285392	101285476	6269936	0	-	0.380952	(0.378,0.408]	chr15	597994	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SNRPA1	ENSG00000131876.18	ENST00000254193.11:ENST00000558036.5:ENST00000559309.5:ENST00000560433.5:ENST00000394082.8:ENST00000540017.6:ENST00000560496.5:ENST00000559686.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	43	2	2.04292	3.5237550000000004	5.00459	0.0326035	0.00371142	0.145164	0.0535094
chr21	28944382	28944453	7436181	0	-	0.380282	(0.378,0.408]	chr21	758316	1	CDS	CDS:EXON_MRNA	LTN1	ENSG00000198862.14	ENST00000614971.4:ENST00000389194.7:ENST00000361371.10	protein_coding	protein_coding	protein_coding	protein_coding	2	43	2	2.04292	3.5237550000000004	5.00459	0.0326035	0.00371142	0.145164	0.0535094
chr17	44321918	44322005	6779371	0	-	0.574713	(0.57,1]	chr17	668461	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SLC25A39	ENSG00000013306.16	ENST00000225308.12:ENST00000591006.5:ENST00000377095.10:ENST00000590194.5:ENST00000586016.5:ENST00000537904.6:ENST00000588767.5:ENST00000588315.5:ENST00000585695.5:ENST00000588049.5:ENST00000585636.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	79	2	3.44296	3.523675	3.60439	1.64192e-5	5.6778e-6	0.00324999	0.00165922
chr1	235289235	235289335	663473	0	-	0.22	[0,0.28]	chr1	78552	281	INTRON	INTRON	ARID4B	ENSG00000054267.22	ENST00000349213.7:ENST00000366603.6:ENST00000264183.9:ENST00000421364.5:ENST00000491632.5:ENST00000418304.1:ENST00000466653.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	59	2	2.6632	3.523535	4.38387	0.0501911	0.00515076	0.156383	0.0650394
chr17	27311716	27311814	6580721	0	+	0.520408	(0.515,0.57]	chr17	639645	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	WSB1	ENSG00000109046.15	ENST00000467843.6:ENST00000262394.7:ENST00000348811.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	50	2	2.53705	3.523525	4.51	0.00809449	0.00186194	0.0766625	0.039946
chr11	67276811	67276903	4813975	0	+	0.543478	(0.515,0.57]	chr11	448242	4	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	GRK2	ENSG00000173020.11	ENST00000308595.10:ENST00000526285.1:ENST00000530291.5:ENST00000416281.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	46	2	2.00468	3.523465	5.04225	0.0166344	0.00131841	0.110511	0.0331539
chr1	228220791	228220890	331361	0	+	0.434343	(0.408,0.44]	chr1	38254	8	INTRON	INTRON	OBSCN	ENSG00000154358.23	ENST00000570156.7:ENST00000680850.1:ENST00000284548.16:ENST00000422127.5:ENST00000636476.2:ENST00000662438.1:ENST00000366704.2:ENST00000668066.1	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	2.18807	3.523395	4.85872	0.0708044	0.00221911	0.184528	0.0435144
chr12	111856378	111856477	5228871	0	+	0.424242	(0.408,0.44]	chr12	495634	131	INTRON	INTRON	MAPKAPK5	ENSG00000089022.14	ENST00000550735.7:ENST00000553053.5:ENST00000546394.1:ENST00000551404.6:ENST00000549875.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	34	2	2.18807	3.523395	4.85872	0.0708044	0.00221911	0.184528	0.0435144
chr17	51004911	51005011	6795836	0	-	0.43	(0.408,0.44]	chr17	670934	3	SS5_PROX	SS5_PROX:INTRON	SPAG9	ENSG00000008294.22	ENST00000262013.12:ENST00000510283.5:ENST00000505279.5:ENST00000357122.8:ENST00000514613.5:ENST00000505173.5:ENST00000513547.5:ENST00000511795.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	34	2	2.18807	3.523395	4.85872	0.0708044	0.00221911	0.184528	0.0435144
chr20	31778412	31778512	7254059	0	+	0.43	(0.408,0.44]	chr20	736776	2	SS3_PROX	SS3_PROX:INTRON	TPX2	ENSG00000088325.16	ENST00000340513.4:ENST00000300403.11	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	2.18807	3.523395	4.85872	0.0708044	0.00221911	0.184528	0.0435144
chr10	125047144	125047244	4713200	0	-	0.29	(0.28,0.32]	chr10	434897	76	INTRON	INTRON	CTBP2	ENSG00000175029.17	ENST00000337195.9:ENST00000411419.6:ENST00000494626.6:ENST00000531469.5:ENST00000460976.5:ENST00000476817.1:ENST00000530884.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	44	2	2.91851	3.5232900000000003	4.12807	0.0338135	0.0130672	0.146709	0.093385
chr5	54113201	54113270	2618940	0	-	0.42029	(0.408,0.44]	chr5	248845	1	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2:ENST00000505630.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	81	2	1.17777	3.5232799999999997	5.86879	0.0604409	1.0135e-4	0.191687	0.00906611
chr19	949800	949900	6992728	0	+	0.51	(0.476,0.515]	chr19	692392	167	INTRON	INTRON	ARID3A	ENSG00000116017.11	ENST00000263620.8:ENST00000587532.5:ENST00000457152.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	43	2	2.43242	3.5232200000000002	4.61402	0.00947755	0.0091895	0.0855292	0.0817766
chr14	105454527	105454627	5831002	0	+	0.48	(0.476,0.515]	chr14	553603	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MTA1	ENSG00000182979.18	ENST00000435036.6:ENST00000331320.12:ENST00000406191.5:ENST00000405646.5:ENST00000438610.5:ENST00000481012.5:ENST00000424723.5:ENST00000494026.1:ENST00000498644.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	35	2	2.82673	3.523185	4.21964	0.0167715	0.0134403	0.110511	0.0946278
chr6	145810710	145810810	3244041	0	-	0.23	[0,0.28]	chr6	301281	39	INTRON	INTRON	FBXO30	ENSG00000118496.5	ENST00000237281.5	protein_coding	protein_coding	protein_coding	protein_coding	4	73	2	1.53147	3.523175	5.51488	0.0533898	0.00314116	0.179876	0.0500389
chr6	78970280	78970378	3140972	0	-	0.295918	(0.28,0.32]	chr6	292772	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PHIP	ENSG00000146247.14	ENST00000275034.5:ENST00000479165.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	59	2	1.61031	3.523005	5.4357	0.0600513	0.00215368	0.190658	0.0417866
chr7	102655577	102655677	3589076	0	-	0.52	(0.515,0.57]	chr7	335089	129	INTRON	INTRON	ENSG00000267645	ENSG00000267645.5	ENST00000476151.5	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	6	68	2	1.43349	3.52299	5.61249	0.0378274	4.24748e-5	0.141117	0.00526976
chr14	96803666	96803766	5810917	0	+	0.43	(0.408,0.44]	chr14	551001	35	INTRON	INTRON	VRK1	ENSG00000100749.9	ENST00000553683.2:ENST00000680538.1:ENST00000555351.2:ENST00000681195.1:ENST00000681524.1:ENST00000680084.1:ENST00000679533.1:ENST00000681598.1:ENST00000679727.1:ENST00000679758.1:ENST00000680509.1:ENST00000557222.6:ENST00000679977.1:ENST00000680387.1:ENST00000680335.1:ENST00000680683.1:ENST00000681474.1:ENST00000216639.8:ENST00000681363.1:ENST00000681538.1:ENST00000679736.1:ENST00000681176.1:ENST00000680922.1:ENST00000679903.1:ENST00000557352.2:ENST00000681101.1:ENST00000681419.1:ENST00000680348.1:ENST00000679941.1:ENST00000679452.1:ENST00000680849.1:ENST00000679770.1:ENST00000681493.1:ENST00000681778.1:ENST00000680993.1:ENST00000681355.1:ENST00000681695.1:ENST00000681344.1:ENST00000680007.1:ENST00000679918.1:ENST00000681785.1:ENST00000679816.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	34	2	2.51492	3.5229	4.53088	0.0329839	0.00669275	0.133816	0.0738715
chr22	21608356	21608456	7482111	0	+	0.41	(0.408,0.44]	chr22	763238	150	INTRON	INTRON	UBE2L3	ENSG00000185651.16	ENST00000458578.6:ENST00000545681.2:ENST00000696046.1:ENST00000342192.9:ENST00000496722.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	34	2	2.51492	3.5229	4.53088	0.0329839	0.00669275	0.133816	0.0738715
chr22	42239727	42239827	7593258	0	-	0.42	(0.408,0.44]	chr22	777718	240	INTRON	INTRON	TCF20	ENSG00000100207.21	ENST00000359486.8:ENST00000677622.1:ENST00000683686.1:ENST00000675876.1:ENST00000515426.1	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	2.51492	3.5229	4.53088	0.0329839	0.00669275	0.133816	0.0738715
chr12	50512036	50512136	5137220	0	+	0.42	(0.408,0.44]	chr12	484468	64	INTRON	INTRON	DIP2B	ENSG00000066084.13	ENST00000301180.10:ENST00000549620.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	46	2	1.74775	3.52277	5.29779	0.0735403	3.80479e-4	0.190238	0.0176313
chr10	68731575	68731675	4442369	0	+	0.38	(0.378,0.408]	chr10	409595	86	INTRON	INTRON	CCAR1	ENSG00000060339.14	ENST00000536391.5:ENST00000630771.2:ENST00000538031.5:ENST00000543719.5:ENST00000541012.5:ENST00000265872.11:ENST00000539539.5:ENST00000543229.5:ENST00000536012.5:ENST00000543225.5:ENST00000494903.2:ENST00000540210.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	47	2	1.76032	3.522765	5.28521	0.0721577	4.52877e-4	0.187433	0.0192381
chr5	39048922	39049022	2605393	0	-	0.4	(0.378,0.408]	chr5	247896	274	INTRON	INTRON	RICTOR	ENSG00000164327.13	ENST00000357387.8:ENST00000511516.5:ENST00000296782.9:ENST00000510711.5:ENST00000513566.1:ENST00000514735.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	48	2	2.82967	3.52265	4.21563	0.0315429	0.00189968	0.13151	0.0402736
chr17	77091091	77091188	6678122	0	+	0.494845	(0.476,0.515]	chr17	652306	14	INTRON	INTRON	SNHG20:SEC14L1	ENSG00000234912.12:ENSG00000129657.16	ENST00000564414.5:ENST00000568056.5:ENST00000568363.5:ENST00000647734.1:ENST00000434411.6:ENST00000649047.1:ENST00000649712.1:ENST00000650557.1:ENST00000647904.1:ENST00000648984.1:ENST00000392476.6:ENST00000589827.5:ENST00000561721.6:ENST00000561633.5:ENST00000564509.5:ENST00000565256.1:ENST00000566583.5:ENST00000648740.1:ENST00000569632.1:ENST00000430767.8	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	2	43	2	1.8388	3.522625	5.20645	0.0564473	0.00136049	0.184423	0.0336321
chr17	34993289	34993386	6599185	0	+	0.329897	(0.32,0.35]	chr17	642146	2	INTRON	INTRON	LIG3	ENSG00000005156.12	ENST00000378526.9:ENST00000585941.5:ENST00000262327.9:ENST00000590630.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	71	2	1.37958	3.52262	5.66566	0.0577841	6.06695e-4	0.188484	0.0226059
chr2	32515477	32515574	732431	0	+	0.381443	(0.378,0.408]	chr2	84577	6	CDS	CDS:EXON_MRNA	BIRC6	ENSG00000115760.15	ENST00000421745.7:ENST00000648282.1	protein_coding	protein_coding	protein_coding	protein_coding	2	72	2	3.35998	3.522575	3.68517	0.00230615	3.90172e-4	0.0428247	0.0177751
chr18	79984899	79984998	6990987	0	-	0.414141	(0.408,0.44]	chr18	692039	49	INTRON	INTRON	TXNL4A	ENSG00000141759.15	ENST00000269601.10:ENST00000585474.5:ENST00000588162.1:ENST00000592957.1:ENST00000355491.5:ENST00000585769.5:ENST00000586612.1:ENST00000591711.5:ENST00000586825.1:ENST00000586295.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	43	2	1.85305	3.5225350000000004	5.19202	0.0543543	0.0016671	0.182243	0.0369207
chr10	45882075	45882175	4607752	0	-	0.31	(0.28,0.32]	chr10	424444	186	INTRON	INTRON	PARGP1	ENSG00000239883.9	ENST00000440803.7:ENST00000688192.1:ENST00000686367.1:ENST00000693310.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	1	36	2	2.53522	3.522515	4.50981	0.0310424	0.0275554	0.143457	0.123904
chr12	102163937	102164037	5205305	0	+	0.32	(0.28,0.32]	chr12	492840	1	SS3_PROX	SS3_PROX:INTRON	PARPBP	ENSG00000185480.12	ENST00000327680.7:ENST00000541394.5:ENST00000543784.5:ENST00000392911.6:ENST00000457614.6:ENST00000417507.6:ENST00000412715.3:ENST00000535811.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	36	2	2.53522	3.522515	4.50981	0.0310424	0.0275554	0.143457	0.123904
chr17	60619926	60620026	6644667	0	+	0.29	(0.28,0.32]	chr17	648925	23	INTRON	INTRON	PPM1D	ENSG00000170836.13	ENST00000305921.8:ENST00000693102.1:ENST00000685212.1:ENST00000693196.1:ENST00000392995.7:ENST00000685582.1:ENST00000688505.1:ENST00000629650.3:ENST00000687355.1:ENST00000686064.1:ENST00000689445.1:ENST00000590418.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	36	2	2.53522	3.522515	4.50981	0.0310424	0.0275554	0.143457	0.123904
chr4	150917929	150918028	2270794	0	-	0.292929	(0.28,0.32]	chr4	220905	8	INTRON	INTRON	LRBA	ENSG00000198589.14	ENST00000357115.9:ENST00000651943.2:ENST00000510413.5:ENST00000651035.1:ENST00000507224.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	36	2	2.53522	3.522515	4.50981	0.0310424	0.0275554	0.143457	0.123904
chr6	36896573	36896671	2854911	0	+	0.316327	(0.28,0.32]	chr6	269872	16	INTRON	INTRON	C6orf89	ENSG00000198663.17	ENST00000359359.6:ENST00000355190.7:ENST00000373685.1:ENST00000480824.7	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	2.53522	3.522515	4.50981	0.0310424	0.0275554	0.143457	0.123904
chr7	17920118	17920217	3496363	0	-	0.292929	(0.28,0.32]	chr7	326520	124	INTRON	INTRON	SNX13	ENSG00000071189.21	ENST00000428135.7:ENST00000611725.4:ENST00000409076.6:ENST00000444712.5:ENST00000482558.5:ENST00000409604.1:ENST00000475800.5:ENST00000474067.5:ENST00000471744.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	36	2	2.53522	3.522515	4.50981	0.0310424	0.0275554	0.143457	0.123904
chr7	135955629	135955729	3649255	0	-	0.31	(0.28,0.32]	chr7	339214	36	INTRON	INTRON	MTPN	ENSG00000105887.11	ENST00000393085.4:ENST00000435723.1	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	2.53522	3.522515	4.50981	0.0310424	0.0275554	0.143457	0.123904
chr8	6754850	6754950	3695475	0	+	0.31	(0.28,0.32]	chr8	342872	4	SS3_PROX	SS3_PROX:INTRON	AGPAT5	ENSG00000155189.12	ENST00000285518.11:ENST00000523234.5:ENST00000518327.1:ENST00000530716.1:ENST00000533159.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	36	2	2.53522	3.522515	4.50981	0.0310424	0.0275554	0.143457	0.123904
chr5	104165594	104165694	2442071	0	+	0.3	(0.28,0.32]	chr5	234410	603	INTRON	INTRON	LINC02163	ENSG00000251026.2	ENST00000662211.1:ENST00000666145.1	lncRNA	lncRNA	lncRNA	lncRNA	1	37	2	2.80157	3.522385	4.2432	0.0479043	0.0147132	0.153019	0.106558
chr6	36867322	36867422	3089515	0	-	0.31	(0.28,0.32]	chr6	289005	88	INTRON	INTRON	PPIL1	ENSG00000137168.8	ENST00000373699.6	protein_coding	protein_coding	protein_coding	protein_coding	1	37	2	2.80157	3.522385	4.2432	0.0479043	0.0147132	0.153019	0.106558
chr7	105777227	105777327	3606981	0	-	0.43	(0.408,0.44]	chr7	336405	154	INTRON	INTRON	ATXN7L1	ENSG00000146776.15	ENST00000419735.8:ENST00000318724.8:ENST00000478915.1	protein_coding	protein_coding	protein_coding	protein_coding	2	46	2	2.11447	3.522355	4.93024	0.0285207	0.00170369	0.12666	0.0381936
chr2	111867522	111867622	1214712	0	-	0.5	(0.476,0.515]	chr2	129205	1	SS5_PROX	SS5_PROX:INTRON	ANAPC1	ENSG00000153107.13	ENST00000341068.8	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	2.9435	3.522315	4.10113	0.0226984	0.00929849	0.124921	0.0817766
chr9	130701139	130701222	4213786	0	+	0.506024	(0.476,0.515]	chr9	386405	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS3_PROX:SS5_PROX:INTRON	EXOSC2	ENSG00000130713.17	ENST00000491115.7:ENST00000686102.1:ENST00000691284.1:ENST00000685137.1:ENST00000495699.3:ENST00000688967.1:ENST00000691104.1:ENST00000691926.1:ENST00000693435.1:ENST00000688258.1:ENST00000372358.10:ENST00000546165.6:ENST00000372352.7:ENST00000687420.1:ENST00000693011.1:ENST00000687051.1:ENST00000691425.1:ENST00000693610.1:ENST00000692794.1:ENST00000689890.1:ENST00000688350.1:ENST00000686106.1:ENST00000372351.7:ENST00000372350.7:ENST00000685277.1:ENST00000688364.1:ENST00000689662.1:ENST00000430138.7:ENST00000467138.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	36	2	2.9435	3.522315	4.10113	0.0226984	0.00929849	0.124921	0.0817766
chr12	76829488	76829588	5174521	0	+	0.32	(0.28,0.32]	chr12	490143	6	INTRON	INTRON	ZDHHC17	ENSG00000186908.15	ENST00000426126.7	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	2.38101	3.5223	4.66359	0.0456017	0.0193496	0.164236	0.108861
chr13	99544793	99544892	5527320	0	+	0.282828	(0.28,0.32]	chr13	528394	4	INTRON	INTRON	TM9SF2	ENSG00000125304.10	ENST00000642475.1:ENST00000376387.5	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	2.38101	3.5223	4.66359	0.0456017	0.0193496	0.164236	0.108861
chr15	94865153	94865253	6105280	0	+	0.31	(0.28,0.32]	chr15	581666	79	INTRON	INTRON	ENSG00000277654	ENSG00000277654.6	ENST00000618611.4:ENST00000648065.1:ENST00000618377.1:ENST00000621842.4:ENST00000615751.4:ENST00000614581.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	1	36	2	2.38101	3.5223	4.66359	0.0456017	0.0193496	0.164236	0.108861
chr16	28134621	28134715	6467673	0	-	0.319149	(0.28,0.32]	chr16	624520	3	INTRON	INTRON	XPO6	ENSG00000169180.12	ENST00000304658.10:ENST00000565698.5:ENST00000563138.5:ENST00000565284.5:ENST00000567842.5:ENST00000564337.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	36	2	2.38101	3.5223	4.66359	0.0456017	0.0193496	0.164236	0.108861
chr17	6929688	6929788	6717502	0	-	0.31	(0.28,0.32]	chr17	658651	16	INTRON	INTRON	ALOX12-AS1	ENSG00000215067.11	ENST00000653385.1:ENST00000659418.1:ENST00000572385.5:ENST00000570562.5:ENST00000575889.5	lncRNA	lncRNA	lncRNA	lncRNA	1	36	2	2.38101	3.5223	4.66359	0.0456017	0.0193496	0.164236	0.108861
chr8	23536100	23536199	3715169	0	+	0.464646	(0.44,0.476]	chr8	345217	43	INTRON	INTRON	SLC25A37	ENSG00000147454.14	ENST00000519973.6:ENST00000290075.10:ENST00000417331.6:ENST00000518881.5:ENST00000520654.1:ENST00000523930.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	115	2	2.6062	3.5222949999999997	4.43839	0.00148054	1.17346e-5	0.0353633	0.00271029
chr11	120419757	120419856	4877038	0	+	0.232323	[0,0.28]	chr11	455815	81	INTRON	INTRON	ARHGEF12	ENSG00000196914.9	ENST00000397843.7:ENST00000356641.7:ENST00000532993.5:ENST00000529970.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	40	2	2.74901	3.522185	4.29536	0.0590175	0.0188843	0.167915	0.118148
chr7	105067307	105067402	3375161	0	+	0.273684	[0,0.28]	chr7	315900	1	INTRON	INTRON	KMT2E	ENSG00000005483.22	ENST00000622386.2:ENST00000257745.9:ENST00000334884.9:ENST00000311117.8:ENST00000478990.5:ENST00000495267.5:ENST00000476671.5:ENST00000667857.1:ENST00000482560.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	40	2	2.74901	3.522185	4.29536	0.0590175	0.0188843	0.167915	0.118148
chr7	140915170	140915270	3663638	0	-	0.27	[0,0.28]	chr7	340105	646	INTRON	INTRON	BRAF	ENSG00000157764.14	ENST00000496384.7:ENST00000644969.2:ENST00000646891.1:ENST00000644905.1:ENST00000642228.1:ENST00000288602.11:ENST00000646730.1:ENST00000497784.2:ENST00000642272.1:ENST00000642808.1:ENST00000643790.1:ENST00000469930.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	40	2	2.74901	3.522185	4.29536	0.0590175	0.0188843	0.167915	0.118148
chr13	113638396	113638490	5550381	0	+	0.531915	(0.515,0.57]	chr13	530426	1	INTRON	INTRON	TFDP1	ENSG00000198176.13	ENST00000375370.10:ENST00000544902.5:ENST00000494812.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	108	2	3.40472	3.522145	3.63957	8.47527e-5	2.92494e-5	0.0077763	0.00449807
chr6	154773688	154773788	3002220	0	+	0.41	(0.408,0.44]	chr6	280738	3	SS3_PROX	SS3_PROX:INTRON	SCAF8	ENSG00000213079.10	ENST00000367186.7:ENST00000417268.3:ENST00000461219.5:ENST00000367178.8:ENST00000464628.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	65	2	1.74813	3.522125	5.29612	0.0163902	0.00113523	0.109715	0.0307488
chr13	100671862	100671961	5648378	0	-	0.383838	(0.378,0.408]	chr13	538046	9	INTRON	INTRON	TMTC4	ENSG00000125247.16	ENST00000342624.10:ENST00000376234.7:ENST00000328767.9:ENST00000440120.2:ENST00000475272.1:ENST00000423847.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	32	2	2.63247	3.52208	4.41169	0.0215745	0.0199606	0.123836	0.109608
chr16	89951206	89951300	6423085	0	+	0.382979	(0.378,0.408]	chr16	616898	5	INTRON	INTRON	DEF8	ENSG00000140995.17	ENST00000567999.5:ENST00000617948.4:ENST00000610455.4:ENST00000563594.6:ENST00000562578.5:ENST00000566820.5:ENST00000561784.5:ENST00000566079.5:ENST00000268676.11:ENST00000561741.5:ENST00000562986.5:ENST00000569453.5:ENST00000570182.5:ENST00000567874.5:ENST00000561959.5:ENST00000418391.6:ENST00000569061.5:ENST00000569803.5:ENST00000567884.5:ENST00000567243.5:ENST00000568096.5:ENST00000563795.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	32	2	2.63247	3.52208	4.41169	0.0215745	0.0199606	0.123836	0.109608
chr18	57616422	57616522	6980656	0	-	0.38	(0.378,0.408]	chr18	690705	4	SS3_PROX	SS3_PROX:INTRON	NARS1	ENSG00000134440.12	ENST00000256854.10:ENST00000586807.5:ENST00000411676.6:ENST00000540592.5:ENST00000591599.5:ENST00000587675.5:ENST00000588661.5:ENST00000587194.1:ENST00000590123.1:ENST00000587366.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	32	2	2.63247	3.52208	4.41169	0.0215745	0.0199606	0.123836	0.109608
chr3	72415311	72415411	1745608	0	-	0.39	(0.378,0.408]	chr3	177368	348	INTRON	INTRON	RYBP	ENSG00000163602.12	ENST00000477973.5	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	2.63247	3.52208	4.41169	0.0215745	0.0199606	0.123836	0.109608
chr4	128854932	128855030	2044726	0	+	0.387755	(0.378,0.408]	chr4	203029	23	INTRON	INTRON	JADE1	ENSG00000077684.16	ENST00000226319.11:ENST00000511647.5:ENST00000452328.6:ENST00000512960.5:ENST00000610919.4:ENST00000413543.6:ENST00000611140.4	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	2.63247	3.52208	4.41169	0.0215745	0.0199606	0.123836	0.109608
chr6	17699491	17699591	3066140	0	-	0.4	(0.378,0.408]	chr6	284872	105	INTRON	INTRON	NUP153	ENSG00000124789.12	ENST00000613258.4:ENST00000537253.5:ENST00000262077.3	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	2.63247	3.52208	4.41169	0.0215745	0.0199606	0.123836	0.109608
chr22	20397208	20397307	7479105	0	+	0.575758	(0.57,1]	chr22	762912	14	INTRON	INTRON	ZNF74	ENSG00000185252.19	ENST00000611540.4:ENST00000403682.7:ENST00000400451.7:ENST00000357502.5:ENST00000493734.5:ENST00000420626.1:ENST00000437275.5:ENST00000405993.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	33	2	1.98953	3.5220100000000003	5.05449	0.0182848	1.79828e-4	0.115629	0.0121697
chr1	214616017	214616115	313666	0	+	0.408163	(0.378,0.408]	chr1	36082	6	INTRON	INTRON	CENPF	ENSG00000117724.14	ENST00000366955.8	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	2.45932	3.521795	4.58427	0.0346754	0.0128325	0.148144	0.0926667
chr11	47630354	47630454	4950748	0	-	0.38	(0.378,0.408]	chr11	464317	4	SS5_PROX	SS5_PROX:INTRON	MTCH2	ENSG00000109919.10	ENST00000539759.5:ENST00000302503.8:ENST00000525649.5:ENST00000530428.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	32	2	2.45932	3.521795	4.58427	0.0346754	0.0128325	0.148144	0.0926667
chr12	116010778	116010875	5422869	0	-	0.402062	(0.378,0.408]	chr12	518216	18	EXON_MRNA	EXON_MRNA:INTRON	MED13L	ENSG00000123066.9	ENST00000281928.9:ENST00000650226.1:ENST00000648737.1:ENST00000549786.2:ENST00000548743.2:ENST00000649762.1:ENST00000647567.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	32	2	2.45932	3.521795	4.58427	0.0346754	0.0128325	0.148144	0.0926667
chr17	47675182	47675282	6622853	0	+	0.38	(0.378,0.408]	chr17	646090	4	SS5_PROX	SS5_PROX:INTRON	KPNB1	ENSG00000108424.11	ENST00000535458.6:ENST00000583648.6:ENST00000290158.9:ENST00000540627.5:ENST00000582097.5:ENST00000677341.1:ENST00000579901.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	32	2	2.45932	3.521795	4.58427	0.0346754	0.0128325	0.148144	0.0926667
chr2	131237893	131237993	865750	0	+	0.39	(0.378,0.408]	chr2	97231	3	SS3_PROX	SS3_PROX:INTRON	PLEKHB2:POTEE	ENSG00000115762.17:ENSG00000188219.16	ENST00000404460.5:ENST00000683005.1:ENST00000356920.9:ENST00000358087.9:ENST00000514256.5:ENST00000626191.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	32	2	2.45932	3.521795	4.58427	0.0346754	0.0128325	0.148144	0.0926667
chr3	100037882	100037982	1464105	0	+	0.39	(0.378,0.408]	chr3	153506	120	INTRON	INTRON	CMSS1	ENSG00000184220.12	ENST00000463526.1:ENST00000421999.8:ENST00000491299.5:ENST00000496116.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	32	2	2.45932	3.521795	4.58427	0.0346754	0.0128325	0.148144	0.0926667
chr6	87523671	87523767	3151951	0	-	0.385417	(0.378,0.408]	chr6	293990	15	INTRON	INTRON	RARS2	ENSG00000146282.19	ENST00000691533.1:ENST00000493269.2:ENST00000685069.1:ENST00000691725.1:ENST00000369536.10:ENST00000693431.1:ENST00000685408.1:ENST00000693327.1:ENST00000691205.1:ENST00000689174.1:ENST00000692684.1:ENST00000686988.1:ENST00000690622.1:ENST00000689206.1:ENST00000688532.1:ENST00000686154.1:ENST00000686407.1:ENST00000685701.1:ENST00000689561.1:ENST00000691238.1:ENST00000685336.1:ENST00000686284.1:ENST00000687586.1:ENST00000685376.1:ENST00000691634.1:ENST00000685881.1:ENST00000691815.1:ENST00000687090.1:ENST00000451155.2:ENST00000687437.1:ENST00000692394.1:ENST00000687729.1:ENST00000693605.1:ENST00000687909.1:ENST00000688391.1:ENST00000690884.1:ENST00000692843.1:ENST00000684790.1:ENST00000692270.1:ENST00000685219.1:ENST00000689952.1:ENST00000687579.1:ENST00000686857.1:ENST00000690205.1:ENST00000690705.1:ENST00000686371.1:ENST00000686142.1:ENST00000688106.1:ENST00000686196.1:ENST00000688842.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	32	2	2.45932	3.521795	4.58427	0.0346754	0.0128325	0.148144	0.0926667
chr7	87006852	87006952	3564903	0	-	0.38	(0.378,0.408]	chr7	332199	410	INTRON	INTRON	ELAPOR2	ENSG00000164659.15	ENST00000450689.7:ENST00000444627.5:ENST00000423294.5	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	2.45932	3.521795	4.58427	0.0346754	0.0128325	0.148144	0.0926667
chr9	112055831	112055931	4315571	0	-	0.38	(0.378,0.408]	chr9	396900	30	INTRON	INTRON	SUSD1	ENSG00000106868.17	ENST00000374270.8:ENST00000374263.7:ENST00000355396.7:ENST00000374264.6:ENST00000475283.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	32	2	2.45932	3.521795	4.58427	0.0346754	0.0128325	0.148144	0.0926667
chr9	113235946	113236045	4189228	0	+	0.383838	(0.378,0.408]	chr9	381956	84	INTRON	INTRON	SLC31A1	ENSG00000136868.11	ENST00000374212.5	protein_coding	protein_coding	protein_coding	protein_coding	4	59	2	1.71374	3.5217099999999997	5.32968	0.0274158	0.00119786	0.136498	0.0315806
chr2	190892853	190892953	959601	0	+	0.29	(0.28,0.32]	chr2	104160	110	INTRON	INTRON	GLS	ENSG00000115419.13	ENST00000320717.8:ENST00000338435.8:ENST00000479552.1:ENST00000496170.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	87	2	3.23355	3.521685	3.80982	0.004869	3.09593e-4	0.0607461	0.0157609
chr10	74547589	74547689	4459744	0	+	0.47	(0.44,0.476]	chr10	411593	191	INTRON	INTRON	ADK	ENSG00000156110.15	ENST00000672429.1:ENST00000539909.6:ENST00000286621.7:ENST00000673352.1:ENST00000673310.1:ENST00000672920.1:ENST00000672394.1:ENST00000372734.5:ENST00000673027.1:ENST00000541550.6:ENST00000672604.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	34	2	2.60774	3.521495	4.43525	0.0255874	0.00897296	0.120269	0.0849778
chr16	89326545	89326645	6541939	0	-	0.47	(0.44,0.476]	chr16	634203	63	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000647238.1:ENST00000563291.1:ENST00000566858.5:ENST00000644045.1:ENST00000643147.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	34	2	2.60774	3.521495	4.43525	0.0255874	0.00897296	0.120269	0.0849778
chr1	28969040	28969140	59501	0	+	0.37	(0.35,0.378]	chr1	7621	539	INTRON	INTRON	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000647918.1:ENST00000646800.1:ENST00000644342.1:ENST00000646189.1:ENST00000482464.6:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000646260.1:ENST00000373798.5:ENST00000644600.1:ENST00000649674.1:ENST00000643173.1:ENST00000343067.9:ENST00000644780.1:ENST00000650265.1:ENST00000648181.1:ENST00000643604.1:ENST00000648891.1:ENST00000373797.2:ENST00000349460.9:ENST00000645184.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	33	2	2.6498	3.521415	4.39303	0.0237246	0.0210137	0.122348	0.118716
chr1	53834522	53834617	460575	0	-	0.368421	(0.35,0.378]	chr1	55445	16	INTRON	INTRON	NDC1	ENSG00000058804.12	ENST00000371429.4:ENST00000480952.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	33	2	2.6498	3.521415	4.39303	0.0237246	0.0210137	0.122348	0.118716
chr17	42378882	42378982	6772932	0	-	0.36	(0.35,0.378]	chr17	667110	43	INTRON	INTRON	STAT3	ENSG00000168610.16	ENST00000264657.10:ENST00000678044.1:ENST00000678906.1:ENST00000678960.1:ENST00000679014.1:ENST00000678043.1:ENST00000677442.1:ENST00000677723.1:ENST00000679166.1:ENST00000678792.1:ENST00000678764.1:ENST00000678048.1:ENST00000678674.1:ENST00000678445.1:ENST00000678913.1:ENST00000677421.1:ENST00000679231.1:ENST00000677030.1:ENST00000678827.1:ENST00000679185.1:ENST00000677820.1:ENST00000678905.1:ENST00000677479.1:ENST00000676636.1:ENST00000678572.1:ENST00000677271.1:ENST00000677152.1:ENST00000677603.1:ENST00000585517.5:ENST00000678535.1:ENST00000677308.1:ENST00000389272.7:ENST00000588969.5:ENST00000677763.1:ENST00000404395.3:ENST00000678659.1:ENST00000678108.1:ENST00000678529.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	33	2	2.6498	3.521415	4.39303	0.0237246	0.0210137	0.122348	0.118716
chr3	197828288	197828385	1598094	0	+	0.350515	(0.35,0.378]	chr3	165589	9	INTRON	INTRON	LRCH3	ENSG00000186001.14	ENST00000443727.1:ENST00000438796.6:ENST00000428136.2:ENST00000425562.7:ENST00000441090.6:ENST00000414675.6:ENST00000334859.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	33	2	2.6498	3.521415	4.39303	0.0237246	0.0210137	0.122348	0.118716
chr5	134355211	134355310	2727404	0	-	0.353535	(0.35,0.378]	chr5	256649	44	INTRON	INTRON	CDKL3	ENSG00000006837.12	ENST00000520693.5:ENST00000519312.5:ENST00000265334.9:ENST00000523054.5:ENST00000521118.5:ENST00000521755.1:ENST00000523832.1:ENST00000522501.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	33	2	2.6498	3.521415	4.39303	0.0237246	0.0210137	0.122348	0.118716
chr7	77560944	77561043	3342250	0	+	0.363636	(0.35,0.378]	chr7	311312	148	INTRON	INTRON	PTPN12	ENSG00000127947.16	ENST00000248594.11:ENST00000460731.5:ENST00000523952.5:ENST00000433369.6:ENST00000415482.6:ENST00000435495.6:ENST00000418110.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	33	2	2.6498	3.521415	4.39303	0.0237246	0.0210137	0.122348	0.118716
chr7	130176606	130176706	3638459	0	-	0.37	(0.35,0.378]	chr7	338365	6	INTRON	INTRON	TMEM209	ENSG00000146842.17	ENST00000397622.7:ENST00000473456.5:ENST00000462753.5:ENST00000479804.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	33	2	2.6498	3.521415	4.39303	0.0237246	0.0210137	0.122348	0.118716
chrX	77914823	77914923	7685072	0	+	0.37	(0.35,0.378]	chrX	786831	36	INTRON	INTRON	ENSG00000248503:ATP7A:PGK1	ENSG00000248503.3:ENSG00000165240.22:ENSG00000102144.15	ENST00000686088.1:ENST00000693051.1:ENST00000341514.11:ENST00000688746.1:ENST00000688338.1:ENST00000685264.1:ENST00000686515.1:ENST00000687086.1:ENST00000689530.1:ENST00000686999.1:ENST00000642523.1:ENST00000644362.1:ENST00000343533.10:ENST00000686543.1:ENST00000686033.1:ENST00000692908.1:ENST00000686688.1:ENST00000686480.1:ENST00000689649.1:ENST00000686416.1:ENST00000682742.2:ENST00000685434.1:ENST00000693387.1:ENST00000688249.1:ENST00000689891.1:ENST00000691152.1:ENST00000688889.1:ENST00000687984.1:ENST00000685208.1:ENST00000687599.1:ENST00000685885.1:ENST00000687082.1:ENST00000693167.1:ENST00000692729.1:ENST00000645454.1:ENST00000686896.1:ENST00000689731.1:ENST00000684798.1:ENST00000686560.1:ENST00000686464.1:ENST00000686050.1:ENST00000602791.2:ENST00000686133.1:ENST00000645094.1:ENST00000689541.1:ENST00000642651.1:ENST00000693398.1:ENST00000688165.1:ENST00000692110.1:ENST00000687325.1:ENST00000689767.1:ENST00000687628.1:ENST00000691456.1	protein_coding	protein_coding	protein_coding:transcribed_processed_pseudogene	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	33	2	2.6498	3.521415	4.39303	0.0237246	0.0210137	0.122348	0.118716
chr3	37064658	37064755	1655492	0	-	0.474227	(0.44,0.476]	chr3	169889	10	EXON_MRNA	EXON_MRNA:INTRON	LRRFIP2	ENSG00000093167.18	ENST00000336686.9:ENST00000354379.8:ENST00000421276.6:ENST00000460646.5:ENST00000496479.5:ENST00000396428.6:ENST00000440230.5:ENST00000440742.2:ENST00000487246.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	42	2	2.21079	3.5214049999999997	4.83202	0.0194581	0.00525002	0.119831	0.0633615
chr5	90691634	90691728	2421758	0	+	0.446809	(0.44,0.476]	chr5	232946	2	INTRON	INTRON	ADGRV1	ENSG00000164199.18	ENST00000405460.9:ENST00000640403.1:ENST00000639473.1:ENST00000639431.1:ENST00000640779.1:ENST00000640012.1:ENST00000640374.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	42	2	2.21079	3.5214049999999997	4.83202	0.0194581	0.00525002	0.119831	0.0633615
chr5	131540388	131540488	2718220	0	-	0.46	(0.44,0.476]	chr5	255596	75	INTRON	INTRON	RAPGEF6	ENSG00000158987.22	ENST00000509018.6:ENST00000507093.5:ENST00000296859.10:ENST00000627212.2:ENST00000308008.10:ENST00000515170.5:ENST00000510071.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	42	2	2.21079	3.5214049999999997	4.83202	0.0194581	0.00525002	0.119831	0.0633615
chr17	27309701	27309772	6580698	0	+	0.478873	(0.476,0.515]	chr17	639634	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	WSB1	ENSG00000109046.15	ENST00000467843.6:ENST00000262394.7:ENST00000348811.6:ENST00000583096.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	58	2	1.78315	3.5213	5.25945	0.0215899	0.00111445	0.123836	0.0306328
chr4	55406628	55406728	1960697	0	+	0.41	(0.408,0.44]	chr4	196553	29	INTRON	INTRON	TMEM165	ENSG00000134851.13	ENST00000381334.10:ENST00000506198.5:ENST00000508404.5:ENST00000511710.1:ENST00000502797.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	14	339	2	3.07927	3.5212950000000003	3.96332	1.06925e-6	6.88353e-7	6.3737e-4	4.59271e-4
chr17	51074204	51074304	6796550	0	-	0.41	(0.408,0.44]	chr17	671018	174	INTRON	INTRON	SPAG9	ENSG00000008294.22	ENST00000262013.12:ENST00000505279.5:ENST00000357122.8:ENST00000514613.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	55	2	1.69172	3.521295	5.35087	0.0486032	3.00323e-4	0.153946	0.0155054
chr20	5592726	5592826	7312159	0	-	0.29	(0.28,0.32]	chr20	744600	61	INTRON	INTRON	GPCPD1	ENSG00000125772.14	ENST00000379019.7:ENST00000481690.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	77	2	1.78855	3.5212149999999998	5.25388	0.0159081	0.00385849	0.109464	0.0542786
chr13	24436172	24436272	5562453	0	-	0.31	(0.28,0.32]	chr13	531519	3	INTRON	INTRON	PARP4	ENSG00000102699.6	ENST00000381989.4	protein_coding	protein_coding	protein_coding	protein_coding	2	49	2	1.83771	3.5211550000000003	5.2046	0.0591725	0.00448664	0.189982	0.0593175
chr19	55392497	55392597	7101135	0	+	0.53	(0.515,0.57]	chr19	712413	5	INTRON	INTRON	RPL28	ENSG00000108107.15	ENST00000560055.5	protein_coding	protein_coding	protein_coding	protein_coding	2	41	2	2.27238	3.52111	4.76984	0.0161808	0.00198034	0.101453	0.0411469
chr12	62559226	62559324	5152114	0	+	0.265306	[0,0.28]	chr12	487597	27	INTRON	INTRON	MON2	ENSG00000061987.16	ENST00000641654.1:ENST00000546600.5:ENST00000393630.8:ENST00000547095.5:ENST00000552738.5:ENST00000393629.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	89	2	1.34345	3.521055	5.69866	0.0563613	0.00175225	0.184423	0.0376491
chr18	12375970	12376070	6947137	0	-	0.42	(0.408,0.44]	chr18	687272	39	INTRON	INTRON	AFG3L2	ENSG00000141385.12	ENST00000269143.8:ENST00000691970.1:ENST00000691179.1:ENST00000687337.1:ENST00000692497.1:ENST00000688199.1:ENST00000590811.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	114	2	2.88568	3.521055	4.15643	5.30887e-4	3.06341e-5	0.0212758	0.00441979
chr10	59887449	59887548	4623689	0	-	0.353535	(0.35,0.378]	chr10	425682	344	INTRON	INTRON	CCDC6	ENSG00000108091.11	ENST00000263102.7	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	2.39746	3.5210150000000002	4.64457	0.041314	0.012652	0.161534	0.0926667
chr11	27445836	27445935	4937153	0	-	0.373737	(0.35,0.378]	chr11	462402	326	INTRON	INTRON	LGR4	ENSG00000205213.14	ENST00000379214.9:ENST00000389858.4:ENST00000480977.2	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	2.39746	3.5210150000000002	4.64457	0.041314	0.012652	0.161534	0.0926667
chr19	29947735	29947835	7047608	0	+	0.37	(0.35,0.378]	chr19	702657	47	INTRON	INTRON	URI1	ENSG00000105176.18	ENST00000360605.8:ENST00000570564.5:ENST00000574233.5:ENST00000392271.6:ENST00000574110.5:ENST00000574666.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	33	2	2.39746	3.5210150000000002	4.64457	0.041314	0.012652	0.161534	0.0926667
chr2	45538131	45538231	1112617	0	-	0.36	(0.35,0.378]	chr2	119293	494	INTRON	INTRON	SRBD1	ENSG00000068784.13	ENST00000263736.5:ENST00000475073.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	33	2	2.39746	3.5210150000000002	4.64457	0.041314	0.012652	0.161534	0.0926667
chr3	12661814	12661910	1617410	0	-	0.354167	(0.35,0.378]	chr3	166999	6	UTR5	UTR5:EXON_MRNA:INTRON	RAF1	ENSG00000132155.14	ENST00000688543.1:ENST00000685348.1:ENST00000251849.9:ENST00000442415.7:ENST00000688444.1:ENST00000692093.1:ENST00000691724.1:ENST00000423275.6:ENST00000687326.1:ENST00000688803.1:ENST00000689876.1:ENST00000686455.1:ENST00000684903.1:ENST00000693312.1:ENST00000690460.1:ENST00000692773.1:ENST00000688625.1:ENST00000693664.1:ENST00000686762.1:ENST00000692311.1:ENST00000692558.1:ENST00000691779.1:ENST00000685738.1:ENST00000690397.1:ENST00000687923.1:ENST00000688269.1:ENST00000693705.1:ENST00000689097.1:ENST00000691899.1:ENST00000689914.1:ENST00000690625.1:ENST00000689389.1:ENST00000687257.1:ENST00000686409.1:ENST00000685653.1:ENST00000689540.1:ENST00000691396.1:ENST00000685437.1:ENST00000689418.1:ENST00000687940.1:ENST00000689481.1:ENST00000491290.2:ENST00000686479.1:ENST00000689033.1:ENST00000692777.1:ENST00000689226.1:ENST00000691718.1:ENST00000692959.1:ENST00000685740.1:ENST00000688753.1:ENST00000688779.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	33	2	2.39746	3.5210150000000002	4.64457	0.041314	0.012652	0.161534	0.0926667
chr8	124486412	124486507	3852668	0	+	0.357895	(0.35,0.378]	chr8	355053	4	CDS	CDS:EXON_MRNA	RNF139	ENSG00000170881.5	ENST00000303545.4	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	2.39746	3.5210150000000002	4.64457	0.041314	0.012652	0.161534	0.0926667
chr9	130794553	130794653	4214670	0	+	0.37	(0.35,0.378]	chr9	386427	797	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000393293.4	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	2.39746	3.5210150000000002	4.64457	0.041314	0.012652	0.161534	0.0926667
chr1	156129426	156129526	230570	0	+	0.42	(0.408,0.44]	chr1	27176	2	SS3_PROX	SS3_PROX:INTRON	LMNA	ENSG00000160789.24	ENST00000502751.5:ENST00000368301.6:ENST00000676385.2:ENST00000675939.1:ENST00000675667.1:ENST00000675989.1:ENST00000676283.1:ENST00000674720.1:ENST00000496738.6:ENST00000674518.1:ENST00000676208.1:ENST00000674600.1:ENST00000675874.1:ENST00000676434.1:ENST00000684195.1:ENST00000683032.1:ENST00000682650.1:ENST00000361308.9:ENST00000368300.9:ENST00000675881.1:ENST00000675455.1:ENST00000677389.1:ENST00000470199.2:ENST00000469565.6:ENST00000368299.7:ENST00000502357.5:ENST00000448611.6:ENST00000515459.5:ENST00000675431.1:ENST00000368297.5:ENST00000504687.6:ENST00000473598.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	51	2	2.08376	3.520965	4.95817	0.0129886	0.00372419	0.0991656	0.0535094
chr12	53455593	53455688	5142922	0	+	0.336842	(0.32,0.35]	chr12	485388	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PCBP2	ENSG00000197111.16	ENST00000546463.6:ENST00000437231.5:ENST00000447282.5:ENST00000359282.9:ENST00000549863.5:ENST00000359462.9:ENST00000550520.6:ENST00000552296.6:ENST00000550192.5:ENST00000551104.5:ENST00000552819.5:ENST00000550910.1:ENST00000455667.7:ENST00000439930.7:ENST00000548933.5:ENST00000546652.6:ENST00000562264.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	276	2	3.34515	3.520825	3.6965	2.66608e-5	6.87352e-6	0.00407562	0.00196831
chr15	34209567	34209663	6131392	0	-	0.604167	(0.57,1]	chr15	583952	12	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	KATNBL1	ENSG00000134152.11	ENST00000256544.8:ENST00000560247.5:ENST00000540594.5:ENST00000560671.5:ENST00000557877.5:ENST00000559462.1:ENST00000560108.5:ENST00000559515.1:ENST00000560915.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	34	2	2.16779	3.52056	4.87333	0.00900694	3.21412e-4	0.0803518	0.0159645
chr6	166954986	166955084	3264306	0	-	0.27551	[0,0.28]	chr6	303043	26	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	ENSG00000249141:RNASET2	ENSG00000249141.1:ENSG00000026297.17	ENST00000507747.1:ENST00000508775.6:ENST00000683770.1:ENST00000611959.2:ENST00000620173.5:ENST00000682774.1:ENST00000684236.1:ENST00000683968.1:ENST00000366855.10:ENST00000421787.5:ENST00000476238.6:ENST00000028008.9:ENST00000478180.6:ENST00000358165.7:ENST00000683158.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	82	2	1.43498	3.5204449999999996	5.60591	0.0775714	6.01442e-4	0.196285	0.0223465
chr3	170089174	170089273	1860886	0	-	0.222222	[0,0.28]	chr3	186581	17	UTR3	UTR3:EXON_MRNA:INTRON	PHC3	ENSG00000173889.16	ENST00000484068.5:ENST00000495893.7	protein_coding	protein_coding	protein_coding	protein_coding	2	53	2	2.15457	3.52041	4.88625	0.0269306	0.0173315	0.135288	0.104099
chr5	32592978	32593077	2334828	0	+	0.444444	(0.44,0.476]	chr5	225364	9	INTRON	INTRON	SUB1	ENSG00000113387.12	ENST00000506237.5:ENST00000512913.5:ENST00000513013.5:ENST00000265073.9:ENST00000511615.5:ENST00000515355.5:ENST00000502897.5:ENST00000504789.5:ENST00000504016.1:ENST00000511175.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	112	2	2.64557	3.5203700000000002	4.39517	0.00158432	7.31137e-6	0.0363089	0.00191996
chr1	32049482	32049582	63010	0	+	0.28	[0,0.28]	chr1	7991	37	INTRON	INTRON	KHDRBS1	ENSG00000121774.18	ENST00000484270.2	protein_coding	processed_transcript	protein_coding	processed_transcript	1	43	2	2.33055	3.52036	4.71017	0.062338	0.0114708	0.175343	0.0956037
chr5	131297107	131297207	2484967	0	+	0.25	[0,0.28]	chr5	237114	326	INTRON	INTRON	CDC42SE2	ENSG00000158985.14	ENST00000502840.5:ENST00000511432.5:ENST00000506419.5:ENST00000395246.5:ENST00000505065.2:ENST00000504701.5:ENST00000503291.5:ENST00000360515.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	43	2	2.33055	3.52036	4.71017	0.062338	0.0114708	0.175343	0.0956037
chr1	171794827	171794927	254480	0	+	0.48	(0.476,0.515]	chr1	30335	3	SS5_PROX	SS5_PROX:INTRON	METTL13	ENSG00000010165.20	ENST00000361735.4:ENST00000362019.7:ENST00000367737.9:ENST00000466643.1:ENST00000476386.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	42	2	2.13304	3.5203249999999997	4.90761	0.024866	0.00386428	0.132101	0.0542786
chr1	179347599	179347697	266918	0	+	0.428571	(0.408,0.44]	chr1	31181	1	CDS	CDS:EXON_MRNA	SOAT1	ENSG00000057252.13	ENST00000540564.5:ENST00000539888.5:ENST00000367619.8	protein_coding	protein_coding	protein_coding	protein_coding	2	42	2	2.14732	3.520295	4.89327	0.0237354	0.00458906	0.129075	0.0595107
chr11	57509063	57509163	4953739	0	-	0.41	(0.408,0.44]	chr11	465056	73	INTRON	INTRON	SLC43A1	ENSG00000149150.9	ENST00000278426.8:ENST00000528450.5:ENST00000530159.5:ENST00000533066.5:ENST00000524995.5:ENST00000534105.5:ENST00000533263.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	42	2	2.14732	3.520295	4.89327	0.0237354	0.00458906	0.129075	0.0595107
chr5	105207098	105207198	2694497	0	-	0.41	(0.408,0.44]	chr5	254244	1978	INTRON	INTRON	ENSG00000251574:ENSG00000253584	ENSG00000251574.8:ENSG00000253584.1	ENST00000503650.1:ENST00000522464.1	lncRNA	lncRNA	lncRNA	lncRNA	2	42	2	2.14732	3.520295	4.89327	0.0237354	0.00458906	0.129075	0.0595107
chr19	38709829	38709902	7066355	0	+	0.534247	(0.515,0.57]	chr19	705520	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ACTN4	ENSG00000130402.13	ENST00000252699.7:ENST00000588618.5:ENST00000440400.2:ENST00000424234.7:ENST00000589528.1:ENST00000390009.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	109	2	2.77687	3.5202150000000003	4.26356	1.97084e-4	1.84244e-5	0.0122531	0.00349761
chr7	17893934	17894033	3496096	0	-	0.353535	(0.35,0.378]	chr7	326496	1	INTRON	INTRON	SNX13	ENSG00000071189.21	ENST00000428135.7:ENST00000611725.4:ENST00000409076.6:ENST00000444712.5:ENST00000482558.5:ENST00000409604.1:ENST00000492626.5:ENST00000475800.5:ENST00000474067.5:ENST00000498463.5:ENST00000494402.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	45	2	2.39583	3.5202	4.64457	0.012652	0.0107976	0.0926667	0.0920575
chr1	19457820	19457920	388632	0	-	0.42	(0.408,0.44]	chr1	46394	81	INTRON	INTRON	CAPZB	ENSG00000077549.19	ENST00000264202.8:ENST00000264203.7:ENST00000375142.5:ENST00000482808.2:ENST00000674449.1:ENST00000674390.1:ENST00000375144.6:ENST00000674432.1:ENST00000433834.5:ENST00000459967.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	63	2	1.44993	3.52019	5.59045	0.0638951	9.6776e-5	0.177824	0.00826486
chr18	80132003	80132103	6938318	0	+	0.33	(0.32,0.35]	chr18	686196	140	INTRON	INTRON	ADNP2	ENSG00000101544.9	ENST00000262198.9:ENST00000560752.5:ENST00000559951.5:ENST00000560561.1:ENST00000561195.1	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	2.57263	3.520105	4.46758	0.0312297	0.0119306	0.13151	0.0962115
chr7	86878687	86878786	3563588	0	-	0.323232	(0.32,0.35]	chr7	332053	19	UTR3	UTR3:EXON_MRNA	ELAPOR2	ENSG00000164659.15	ENST00000450689.7	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	2.57263	3.520105	4.46758	0.0312297	0.0119306	0.13151	0.0962115
chr7	128608313	128608413	3408132	0	+	0.33	(0.32,0.35]	chr7	318369	1	SS5_PROX	SS5_PROX:INTRON	ENSG00000280828:ENSG00000242588	ENSG00000280828.1:ENSG00000242588.6	ENST00000479267.2:ENST00000605862.5	lncRNA	lncRNA	lncRNA:unprocessed_pseudogene	lncRNA:unprocessed_pseudogene	4	64	2	1.80487	3.520035	5.2352	0.0210603	0.0028268	0.122559	0.0472361
chr4	87162932	87163030	2197934	0	-	0.306122	(0.28,0.32]	chr4	215672	30	UTR3	UTR3:EXON_MRNA	KLHL8	ENSG00000145332.14	ENST00000273963.10:ENST00000498875.6:ENST00000425278.6:ENST00000506985.5:ENST00000512111.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	55	2	2.14002	3.5198199999999997	4.89962	0.0304107	0.00425206	0.130461	0.0595557
chr7	156822438	156822537	3687303	0	-	0.323232	(0.32,0.35]	chr7	342065	3	UTR3	UTR3:EXON_MRNA:INTRON	LMBR1	ENSG00000105983.23	ENST00000353442.10:ENST00000415428.5:ENST00000454132.5:ENST00000434503.5:ENST00000430278.5:ENST00000434278.5:ENST00000444719.5:ENST00000461469.5:ENST00000414218.1:ENST00000434453.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	46	2	2.07985	3.51978	4.95971	0.0303092	0.00663522	0.143025	0.0703181
chr14	90290316	90290413	5948355	0	-	0.57732000000000006	(0.57,1]	chr14	564820	2	CDS	CDS:UTR3:EXON_MRNA	NRDE2	ENSG00000119720.18	ENST00000354366.8:ENST00000556189.5:ENST00000553409.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	21	2	2.66801	3.519685	4.37136	0.0169968	0.00345135	0.110899	0.0517761
chr15	22562336	22562434	5975216	0	+	0.591837	(0.57,1]	chr15	568181	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HERC2P2	ENSG00000276550.5	ENST00000613386.4:ENST00000619021.4:ENST00000615156.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	1	21	2	2.66801	3.519685	4.37136	0.0169968	0.00345135	0.110899	0.0517761
chr18	47150201	47150277	6967217	0	-	0.697368	(0.57,1]	chr18	689618	1	SS5_PROX	SS5_PROX:INTRON	HDHD2:ENSG00000267228	ENSG00000167220.12:ENSG00000267228.7	ENST00000588183.5:ENST00000300605.11:ENST00000602459.6:ENST00000587841.5:ENST00000590815.5:ENST00000591480.5:ENST00000586546.5:ENST00000590481.5:ENST00000587388.5:ENST00000592591.1:ENST00000591671.1:ENST00000588705.1:ENST00000602926.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	21	2	2.66801	3.519685	4.37136	0.0169968	0.00345135	0.110899	0.0517761
chr5	140483651	140483748	2503660	0	+	0.57732000000000006	(0.57,1]	chr5	239230	6	INTRON	INTRON	ANKHD1	ENSG00000131503.21	ENST00000297183.10:ENST00000360839.7:ENST00000421134.5:ENST00000246149.10:ENST00000412116.5	protein_coding	protein_coding	protein_coding	protein_coding	1	21	2	2.66801	3.519685	4.37136	0.0169968	0.00345135	0.110899	0.0517761
chr5	149762409	149762509	2517374	0	+	0.58	(0.57,1]	chr5	240653	4	INTRON	INTRON	PPARGC1B	ENSG00000155846.17	ENST00000360453.8:ENST00000394320.7:ENST00000461780.1:ENST00000309241.10	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	21	2	2.66801	3.519685	4.37136	0.0169968	0.00345135	0.110899	0.0517761
chr7	75029647	75029746	3337034	0	+	0.575758	(0.57,1]	chr7	310610	51	UTR3	UTR3:EXON_MRNA	CASTOR2	ENSG00000274070.2	ENST00000616305.2	protein_coding	protein_coding	protein_coding	protein_coding	1	21	2	2.66801	3.519685	4.37136	0.0169968	0.00345135	0.110899	0.0517761
chr17	2476789	2476888	6705869	0	-	0.535354	(0.515,0.57]	chr17	656594	11	INTRON	INTRON	METTL16	ENSG00000127804.13	ENST00000263092.11:ENST00000571669.6:ENST00000576556.5:ENST00000574752.5:ENST00000571298.5:ENST00000576976.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	46	2	2.06206	3.51964	4.97722	0.0135396	0.00168681	0.101363	0.0370386
chr2	135063779	135063879	872784	0	+	0.35	(0.32,0.35]	chr2	97740	11	INTRON	INTRON	RAB3GAP1	ENSG00000115839.19	ENST00000539493.3:ENST00000688088.1:ENST00000693554.1:ENST00000690785.1:ENST00000689880.1:ENST00000264158.13:ENST00000690208.1:ENST00000691478.1:ENST00000686114.1:ENST00000685967.1:ENST00000442034.5:ENST00000687199.1:ENST00000691339.1:ENST00000688182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	48	2	2.49929	3.519585	4.53988	0.0202178	0.00776612	0.109913	0.0787356
chr15	85093768	85093868	6090061	0	+	0.36	(0.35,0.378]	chr15	579554	22	INTRON	INTRON	PDE8A	ENSG00000073417.15	ENST00000310298.8:ENST00000557957.5:ENST00000394553.6:ENST00000339708.9:ENST00000478717.5:ENST00000485596.5:ENST00000559742.5:ENST00000559086.5:ENST00000560789.5:ENST00000557819.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	45	2	1.82887	3.5195250000000002	5.21018	0.0584878	0.00228003	0.189395	0.0426265
chr19	16659255	16659294	7150783	0	-	0.358974	(0.35,0.378]	chr19	722471	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SMIM7	ENSG00000214046.9	ENST00000465250.6:ENST00000481671.6:ENST00000594662.5:ENST00000597781.5:ENST00000598278.5:ENST00000593409.5:ENST00000487803.5:ENST00000627144.2:ENST00000487416.7:ENST00000593404.5:ENST00000597711.5:ENST00000599310.5:ENST00000397349.6:ENST00000602194.5:ENST00000600740.5:ENST00000461488.5:ENST00000463051.5:ENST00000358726.6:ENST00000594507.5:ENST00000461364.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	45	2	1.82887	3.5195250000000002	5.21018	0.0584878	0.00228003	0.189395	0.0426265
chr2	17783024	17783123	706852	0	+	0.40404	(0.378,0.408]	chr2	81910	12	UTR3	UTR3:EXON_MRNA	GEN1	ENSG00000178295.15	ENST00000317402.11:ENST00000381254.7	protein_coding	protein_coding	protein_coding	protein_coding	4	145	2	2.98295	3.5194850000000004	4.05602	9.47389e-4	5.03023e-6	0.0282007	0.00166038
chr5	53937019	53937119	2617174	0	-	0.44	(0.408,0.44]	chr5	248835	250	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	55	2	1.74108	3.519435	5.29779	0.0424099	3.80479e-4	0.148082	0.0176313
chr16	74297288	74297388	6389130	0	+	0.57	(0.515,0.57]	chr16	614386	3	SS5_PROX	SS5_PROX:INTRON	PSMD7	ENSG00000103035.11	ENST00000219313.9:ENST00000566015.1:ENST00000568717.1:ENST00000567958.5:ENST00000568615.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	46	2	1.81744	3.519425	5.22141	0.031028	6.44141e-4	0.143457	0.0231685
chr9	97607954	97608054	4299463	0	-	0.47	(0.44,0.476]	chr9	395297	13	INTRON	INTRON	TSTD2	ENSG00000136925.15	ENST00000341170.5:ENST00000375172.6:ENST00000375165.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	54	2	2.81462	3.5192750000000004	4.22393	0.0162322	0.00247064	0.109464	0.0446195
chr15	66664852	66664952	6051610	0	+	0.51	(0.476,0.515]	chr15	576226	4	SS5_PROX	SS5_PROX:INTRON	LINC01169	ENSG00000259471.1	ENST00000558797.1	lncRNA	lncRNA	lncRNA	lncRNA	5	69	2	1.4095	3.519215	5.62893	0.054012	8.45697e-5	0.16443	0.00776967
chr1	205087708	205087806	622075	0	-	0.326531	(0.32,0.35]	chr1	73954	17	UTR3	UTR3:EXON_MRNA	RBBP5	ENSG00000117222.14	ENST00000367164.1:ENST00000264515.11	protein_coding	protein_coding	protein_coding	protein_coding	2	81	2	3.12146	3.5190599999999996	3.91666	0.00630799	1.54585e-4	0.0687526	0.0106835
chr1	229533891	229533988	653517	0	-	0.329897	(0.32,0.35]	chr1	77456	18	INTRON	INTRON	ABCB10	ENSG00000135776.5	ENST00000344517.5	protein_coding	protein_coding	protein_coding	protein_coding	2	81	2	3.12146	3.5190599999999996	3.91666	0.00630799	1.54585e-4	0.0687526	0.0106835
chr8	29050001	29050101	3726469	0	+	0.37	(0.35,0.378]	chr8	346324	4	SS3_PROX	SS3_PROX:INTRON	HMBOX1	ENSG00000147421.18	ENST00000287701.15:ENST00000397358.7:ENST00000521516.5:ENST00000519047.5:ENST00000355231.9:ENST00000524238.3:ENST00000517386.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	54	2	1.58862	3.5189049999999997	5.44919	0.0615516	9.66659e-4	0.193423	0.0282401
chr3	99827741	99827841	1461999	0	+	0.51	(0.476,0.515]	chr3	153488	93	INTRON	INTRON	CMSS1	ENSG00000184220.12	ENST00000463526.1:ENST00000421999.8:ENST00000491299.5:ENST00000496116.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	42	2	2.19809	3.5188550000000003	4.83962	0.020317	0.00480934	0.121522	0.0602209
chr11	17149730	17149819	4928494	0	-	0.235955	[0,0.28]	chr11	461473	6	INTRON	INTRON	PIK3C2A	ENSG00000011405.14	ENST00000531428.1:ENST00000265970.11:ENST00000691414.1:ENST00000533645.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	39	2	2.57033	3.518795	4.46726	0.0427997	0.0305273	0.148082	0.143385
chr14	30708831	30708927	5675932	0	+	0.229167	[0,0.28]	chr14	540741	9	EXON_MRNA	EXON_MRNA:INTRON	SCFD1	ENSG00000092108.22	ENST00000678760.1:ENST00000677690.1:ENST00000678124.1:ENST00000678716.1:ENST00000678402.1:ENST00000679153.1:ENST00000678516.1:ENST00000678802.1:ENST00000679096.1:ENST00000679102.1:ENST00000678475.1:ENST00000676509.1:ENST00000676750.1:ENST00000679165.1:ENST00000676658.1:ENST00000678399.1:ENST00000678185.1:ENST00000677027.1:ENST00000677413.1:ENST00000555259.5:ENST00000554437.6:ENST00000676834.1:ENST00000678858.1:ENST00000553693.6:ENST00000676914.1:ENST00000676465.1:ENST00000676812.1:ENST00000678669.1:ENST00000676520.1:ENST00000676876.1:ENST00000677617.1:ENST00000676954.1:ENST00000677456.1:ENST00000678735.1:ENST00000679342.1:ENST00000678637.1:ENST00000677176.1:ENST00000557076.6:ENST00000677637.1:ENST00000677974.1:ENST00000458591.7:ENST00000484733.6:ENST00000556768.5:ENST00000544052.6:ENST00000463622.6:ENST00000676674.1:ENST00000677340.1:ENST00000311943.11:ENST00000679075.1:ENST00000678396.1:ENST00000676473.1:ENST00000396629.6:ENST00000678579.1:ENST00000678104.1:ENST00000676817.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	39	2	2.57033	3.518795	4.46726	0.0427997	0.0305273	0.148082	0.143385
chr2	174179885	174179985	1270166	0	-	0.22	[0,0.28]	chr2	134282	375	INTRON	INTRON	OLA1	ENSG00000138430.16	ENST00000284719.8:ENST00000344357.9:ENST00000428402.6:ENST00000409546.5:ENST00000429575.1	protein_coding	protein_coding	protein_coding	protein_coding	1	39	2	2.57033	3.518795	4.46726	0.0427997	0.0305273	0.148082	0.143385
chr6	113952776	113952876	3195544	0	-	0.27	[0,0.28]	chr6	297710	1	SS5_PROX	SS5_PROX:INTRON	HDAC2	ENSG00000196591.12	ENST00000519065.6:ENST00000368632.6:ENST00000519108.5:ENST00000523334.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	39	2	2.57033	3.518795	4.46726	0.0427997	0.0305273	0.148082	0.143385
chrX	24077942	24078038	7630976	0	+	0.34375	(0.32,0.35]	chrX	781497	13	UTR3	UTR3:EXON_MRNA	EIF2S3	ENSG00000130741.11	ENST00000253039.9	protein_coding	protein_coding	protein_coding	protein_coding	5	154	2	2.82161	3.51879	4.21597	4.20731e-4	3.16804e-5	0.0189827	0.00449886
chr16	24168685	24168785	6327102	0	+	0.43	(0.408,0.44]	chr16	605764	135	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000472066.1	protein_coding	protein_coding	protein_coding	protein_coding	2	42	2	2.07919	3.51868	4.95817	0.0291499	0.00372419	0.14147	0.0535094
chr19	10160818	10160918	7134515	0	-	0.42	(0.408,0.44]	chr19	719178	4	SS3_PROX	SS3_PROX:INTRON	DNMT1	ENSG00000130816.17	ENST00000340748.8:ENST00000359526.9:ENST00000592705.5:ENST00000679103.1:ENST00000677634.1:ENST00000676820.1:ENST00000677250.1:ENST00000677013.1:ENST00000677685.1:ENST00000677616.1:ENST00000676604.1:ENST00000678024.1:ENST00000676868.1:ENST00000677783.1:ENST00000678694.1:ENST00000676610.1:ENST00000678804.1:ENST00000679313.1:ENST00000677946.1:ENST00000589349.5:ENST00000591764.1:ENST00000585920.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	42	2	2.07919	3.51868	4.95817	0.0291499	0.00372419	0.14147	0.0535094
chr3	23852879	23852979	1388199	0	+	0.42	(0.408,0.44]	chr3	145385	410	INTRON	INTRON	UBE2E1	ENSG00000170142.12	ENST00000306627.8:ENST00000346855.7:ENST00000495141.5:ENST00000442670.5:ENST00000424381.5:ENST00000467766.5:ENST00000475680.5:ENST00000452012.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	42	2	2.07919	3.51868	4.95817	0.0291499	0.00372419	0.14147	0.0535094
chr9	112576848	112576948	4186690	0	+	0.43	(0.408,0.44]	chr9	381821	12	INTRON	INTRON	KIAA1958	ENSG00000165185.15	ENST00000337530.11:ENST00000536272.5:ENST00000374244.3	protein_coding	protein_coding	protein_coding	protein_coding	2	42	2	2.07919	3.51868	4.95817	0.0291499	0.00372419	0.14147	0.0535094
chr4	98886151	98886250	2208080	0	-	0.323232	(0.32,0.35]	chr4	216142	3	SS5_PROX	SS5_PROX:INTRON	EIF4E	ENSG00000151247.13	ENST00000450253.7:ENST00000280892.10:ENST00000515638.5:ENST00000504432.5:ENST00000511644.5:ENST00000505992.1:ENST00000505194.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	46	2	2.13945	3.518565	4.89768	0.0254517	0.00793135	0.133676	0.076155
chr7	152337712	152337812	3680308	0	-	0.35	(0.32,0.35]	chr7	341647	66	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000682301.1:ENST00000452749.2:ENST00000680867.1:ENST00000683800.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	46	2	2.13945	3.518565	4.89768	0.0254517	0.00793135	0.133676	0.076155
chr7	2358214	2358313	3269654	0	+	0.474747	(0.44,0.476]	chr7	303797	24	INTRON	INTRON	EIF3B	ENSG00000106263.19	ENST00000431643.5:ENST00000360876.9:ENST00000413917.5:ENST00000397011.2	protein_coding	protein_coding	protein_coding	protein_coding	3	62	2	2.41757	3.518555	4.61954	0.00506805	0.00417342	0.0646039	0.057064
chr1	202784992	202785092	620516	0	-	0.29	(0.28,0.32]	chr1	73670	75	INTRON	INTRON	KDM5B	ENSG00000117139.18	ENST00000367265.9:ENST00000648338.1:ENST00000649542.1:ENST00000647757.1:ENST00000367264.7:ENST00000648473.1:ENST00000650569.1:ENST00000648056.1:ENST00000649770.1:ENST00000648469.1:ENST00000650417.1:ENST00000235790.9:ENST00000648738.1:ENST00000648958.1:ENST00000602511.1:ENST00000650368.1:ENST00000649200.1:ENST00000648354.1:ENST00000650493.1:ENST00000470573.5:ENST00000467487.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	67	2	1.64429	3.51832	5.39235	0.0365539	0.0024844	0.153932	0.0446195
chr16	21875754	21875853	6462001	0	-	0.525253	(0.515,0.57]	chr16	623467	96	INTRON	INTRON	NPIPB4	ENSG00000185864.18	ENST00000543449.1:ENST00000538859.1	protein_coding	processed_transcript	protein_coding	processed_transcript	5	130	2	3.42603	3.51829	3.61055	2.42273e-5	1.69899e-5	0.00385018	0.00330681
chr7	111360776	111360876	3622090	0	-	0.38	(0.378,0.408]	chr7	337093	3969	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	182	2	3.22054	3.518155	3.81577	3.60996e-5	9.40567e-6	0.00508987	0.00222163
chr9	137650759	137650859	4223793	0	+	0.49	(0.476,0.515]	chr9	388166	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	EHMT1	ENSG00000181090.21	ENST00000462484.5:ENST00000371394.6:ENST00000630754.2:ENST00000460843.6:ENST00000626216.2:ENST00000629335.2:ENST00000637335.1:ENST00000636376.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	62	2	1.58972	3.518125	5.44653	0.0427022	2.03754e-4	0.148082	0.0124395
chr18	2675242	2675342	6865060	0	+	0.45	(0.44,0.476]	chr18	679964	7	INTRON	INTRON	SMCHD1	ENSG00000101596.17	ENST00000320876.11:ENST00000688342.1:ENST00000684915.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	238	2	2.55353	3.5179799999999997	4.48243	5.66455e-4	6.03741e-9	0.0219934	2.60064e-5
chr10	86766612	86766712	4479497	0	+	0.53	(0.515,0.57]	chr10	412292	93	INTRON	INTRON	BMPR1A	ENSG00000107779.14	ENST00000638429.1:ENST00000372037.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	29	2	2.83188	3.517845	4.20381	0.0189208	0.0108207	0.108861	0.0920575
chr22	41128628	41128723	7521859	0	+	0.515789	(0.515,0.57]	chr22	768538	5	INTRON	INTRON	EP300	ENSG00000100393.14	ENST00000263253.9:ENST00000674155.1	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	2.83188	3.517845	4.20381	0.0189208	0.0108207	0.108861	0.0920575
chr5	180566687	180566787	2562593	0	+	0.57	(0.515,0.57]	chr5	245117	2	SS3_PROX	SS3_PROX:INTRON	CNOT6	ENSG00000113300.13	ENST00000261951.9:ENST00000393356.7:ENST00000618123.4:ENST00000504343.1	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	2.83188	3.517845	4.20381	0.0189208	0.0108207	0.108861	0.0920575
chrX	73978655	73978755	7682445	0	+	0.35	(0.32,0.35]	chrX	786638	103	INTRON	INTRON	JPX	ENSG00000225470.8	ENST00000664637.1:ENST00000639185.1:ENST00000655090.1:ENST00000640437.1:ENST00000660546.1:ENST00000667886.1:ENST00000660840.1:ENST00000657179.1:ENST00000670506.1:ENST00000657910.1:ENST00000662120.1:ENST00000671207.1:ENST00000659254.1:ENST00000656624.1:ENST00000667573.1:ENST00000660856.1:ENST00000660836.1:ENST00000668590.1:ENST00000658649.1:ENST00000414209.6:ENST00000654137.1:ENST00000670994.1:ENST00000602772.5:ENST00000655879.1:ENST00000657372.1:ENST00000657096.1:ENST00000602985.6:ENST00000670685.1:ENST00000670503.1:ENST00000663027.1:ENST00000654995.1:ENST00000602895.6:ENST00000654374.1:ENST00000660087.1:ENST00000665032.1:ENST00000671336.1:ENST00000671476.1:ENST00000667057.1:ENST00000670192.1:ENST00000670464.1:ENST00000665345.1:ENST00000661546.1:ENST00000662543.1:ENST00000602938.6:ENST00000664295.1:ENST00000654005.1:ENST00000669149.1:ENST00000659852.1:ENST00000656509.1:ENST00000602294.6:ENST00000667294.1:ENST00000663470.1:ENST00000602920.6:ENST00000671021.1:ENST00000659849.1:ENST00000667937.1:ENST00000661130.1:ENST00000654196.1:ENST00000655994.1:ENST00000659373.1:ENST00000662239.1:ENST00000670805.1:ENST00000656263.1:ENST00000653069.1:ENST00000657638.1:ENST00000653808.1:ENST00000653929.1:ENST00000653885.1:ENST00000659023.1:ENST00000602546.5:ENST00000659622.1:ENST00000671518.1:ENST00000670408.1	lncRNA	lncRNA	lncRNA	lncRNA	2	80	2	3.42026	3.517665	3.61507	0.00219805	6.48785e-4	0.0417893	0.0230814
chr1	229329749	229329849	652481	0	-	0.49	(0.476,0.515]	chr1	77248	18	INTRON	INTRON	CCSAP	ENSG00000154429.11	ENST00000366687.5:ENST00000284617.7:ENST00000366686.1:ENST00000483092.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	69	2	3.29074	3.517535	3.74433	0.00272563	2.85053e-4	0.0467523	0.0150568
chr1	42693289	42693389	84052	0	+	0.41	(0.408,0.44]	chr1	11021	4	SS3_PROX	SS3_PROX:INTRON	YBX1	ENSG00000065978.19	ENST00000321358.12:ENST00000332220.10:ENST00000436427.1:ENST00000467957.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	58	2	1.84301	3.5175150000000004	5.19202	0.0174311	0.0016671	0.112689	0.0369207
chr7	105037525	105037625	3374851	0	+	0.46	(0.44,0.476]	chr7	315854	226	INTRON	INTRON	KMT2E	ENSG00000005483.22	ENST00000622386.2:ENST00000257745.9:ENST00000334884.9:ENST00000311117.8:ENST00000478990.5:ENST00000480368.5:ENST00000495267.5:ENST00000476671.5:ENST00000667857.1:ENST00000474203.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	59	2	2.00793	3.51748	5.02703	0.00937685	0.00278015	0.0859966	0.0469265
chr11	63691366	63691466	4800012	0	+	0.44	(0.408,0.44]	chr11	444936	92	INTRON	INTRON	RTN3	ENSG00000133318.14	ENST00000341307.6:ENST00000356000.7:ENST00000542238.5:ENST00000538995.1:ENST00000339997.8:ENST00000540798.5:ENST00000537981.5:ENST00000377819.10:ENST00000536011.5:ENST00000543123.1:ENST00000543552.5:ENST00000545432.5:ENST00000338850.5:ENST00000354497.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	128	2	2.99621	3.5173949999999996	4.03858	1.05823e-4	6.51509e-5	0.00920724	0.00669119
chr14	95534016	95534113	5965459	0	-	0.587629	(0.57,1]	chr14	566636	5	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	SNHG10	ENSG00000247092.8	ENST00000667310.2:ENST00000671157.2:ENST00000654925.1:ENST00000667668.1:ENST00000658932.2:ENST00000500370.2:ENST00000554169.2:ENST00000693219.1:ENST00000685307.1:ENST00000691619.1:ENST00000689247.1:ENST00000687146.1:ENST00000660378.2:ENST00000689758.1:ENST00000690868.1:ENST00000693520.1:ENST00000685703.1:ENST00000690961.1:ENST00000689823.1:ENST00000689442.1:ENST00000688138.1:ENST00000693718.1:ENST00000688462.1:ENST00000553559.1:ENST00000555866.5:ENST00000691606.1:ENST00000688965.1	lncRNA	lncRNA	lncRNA	lncRNA	19	273	2	3.34058	3.5173449999999997	3.69411	1.02174e-8	6.38541e-10	3.51053e-5	3.55415e-6
chr3	138540244	138540344	1829093	0	-	0.51	(0.476,0.515]	chr3	183871	25	INTRON	INTRON	CEP70	ENSG00000114107.9	ENST00000264982.8:ENST00000489254.5:ENST00000484888.5:ENST00000474781.5:ENST00000481834.5:ENST00000468900.5:ENST00000462419.5:ENST00000478673.5:ENST00000464035.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	45	2	1.79693	3.5173099999999997	5.23769	0.0649782	5.17244e-4	0.179417	0.0203753
chr4	70720066	70720166	1969585	0	+	0.51	(0.476,0.515]	chr4	197439	144	INTRON	INTRON	RUFY3	ENSG00000018189.13	ENST00000503876.5:ENST00000417478.6	protein_coding	protein_coding	protein_coding	protein_coding	2	45	2	1.79693	3.5173099999999997	5.23769	0.0649782	5.17244e-4	0.179417	0.0203753
chr9	98072351	98072451	4173534	0	+	0.51	(0.476,0.515]	chr9	380322	110	INTRON	INTRON	NANS	ENSG00000095380.11	ENST00000210444.6:ENST00000495319.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	45	2	1.79693	3.5173099999999997	5.23769	0.0649782	5.17244e-4	0.179417	0.0203753
chr1	52247487	52247587	102667	0	+	0.53	(0.515,0.57]	chr1	13486	75	INTRON	INTRON	ZFYVE9	ENSG00000157077.16	ENST00000287727.8:ENST00000371591.2:ENST00000357206.6:ENST00000361625.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	29	2	2.35125	3.517175	4.6831	0.0436431	0.00471288	0.162255	0.0600108
chr15	68817084	68817184	6214939	0	-	0.52	(0.515,0.57]	chr15	593029	3	SS5_PROX	SS5_PROX:INTRON	ANP32A	ENSG00000140350.15	ENST00000465139.6:ENST00000409628.6:ENST00000267918.9:ENST00000560303.1:ENST00000495420.5:ENST00000495764.1:ENST00000483221.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	29	2	2.35125	3.517175	4.6831	0.0436431	0.00471288	0.162255	0.0600108
chr18	14107608	14107708	6952377	0	-	0.55	(0.515,0.57]	chr18	687741	8	INTRON	INTRON	ZNF519	ENSG00000175322.12	ENST00000592345.5:ENST00000589203.5:ENST00000587419.5:ENST00000592049.5:ENST00000592411.5:ENST00000591393.1:ENST00000590202.3:ENST00000589498.5:ENST00000588435.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	29	2	2.35125	3.517175	4.6831	0.0436431	0.00471288	0.162255	0.0600108
chr19	5939028	5939127	7125208	0	-	0.565657	(0.515,0.57]	chr19	717348	28	INTRON	INTRON	RANBP3	ENSG00000031823.14	ENST00000340578.10:ENST00000439268.6:ENST00000592771.5:ENST00000591092.5:ENST00000034275.12:ENST00000587479.2:ENST00000592621.5:ENST00000590623.5:ENST00000591736.5:ENST00000590953.5:ENST00000588879.5:ENST00000587159.5:ENST00000586117.5:ENST00000589353.5:ENST00000587463.5:ENST00000588010.5:ENST00000591124.5:ENST00000585339.5:ENST00000592133.5:ENST00000591881.5:ENST00000589886.5:ENST00000587263.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	29	2	2.35125	3.517175	4.6831	0.0436431	0.00471288	0.162255	0.0600108
chr22	42992919	42993019	7598130	0	-	0.53	(0.515,0.57]	chr22	778194	332	INTRON	INTRON	PACSIN2	ENSG00000100266.19	ENST00000263246.8:ENST00000453643.5:ENST00000422336.5:ENST00000445706.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	29	2	2.35125	3.517175	4.6831	0.0436431	0.00471288	0.162255	0.0600108
chr3	196568438	196568516	1900189	0	-	0.525641	(0.515,0.57]	chr3	190298	1	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	WDR53	ENSG00000185798.8	ENST00000332629.7:ENST00000429115.1:ENST00000433160.1:ENST00000425888.1	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	2.35125	3.517175	4.6831	0.0436431	0.00471288	0.162255	0.0600108
chr4	10088841	10088941	2107136	0	-	0.52	(0.515,0.57]	chr4	208448	1	SS3_PROX	SS3_PROX:INTRON	WDR1	ENSG00000071127.17	ENST00000499869.7:ENST00000382451.6:ENST00000382452.6:ENST00000502702.5:ENST00000515743.5:ENST00000502962.5:ENST00000504739.5:ENST00000506246.5:ENST00000505543.5:ENST00000508949.5:ENST00000510848.5:ENST00000509695.1:ENST00000508079.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	29	2	2.35125	3.517175	4.6831	0.0436431	0.00471288	0.162255	0.0600108
chr5	27472619	27472719	2329590	0	+	0.54	(0.515,0.57]	chr5	225100	1	SS5_PROX	SS5_PROX:INTRON	PURPL	ENSG00000250337.8	ENST00000651409.1:ENST00000650981.1:ENST00000655107.1:ENST00000657375.2:ENST00000659077.1:ENST00000653835.1:ENST00000657173.1:ENST00000514844.6:ENST00000657424.1:ENST00000660307.1:ENST00000669423.1:ENST00000659860.1:ENST00000652841.1:ENST00000686605.1:ENST00000690628.1:ENST00000510165.6:ENST00000670554.1:ENST00000665451.1:ENST00000667624.1:ENST00000667420.1:ENST00000660639.1:ENST00000668406.1:ENST00000656783.1:ENST00000512067.5:ENST00000664566.1:ENST00000659489.1:ENST00000667264.1:ENST00000670840.1:ENST00000503107.2:ENST00000688783.1:ENST00000654039.1:ENST00000687778.1:ENST00000505775.5:ENST00000668103.1:ENST00000664501.1:ENST00000661698.1	lncRNA	lncRNA	lncRNA	lncRNA	1	29	2	2.35125	3.517175	4.6831	0.0436431	0.00471288	0.162255	0.0600108
chr7	30630752	30630851	3301818	0	+	0.444444	(0.44,0.476]	chr7	306608	22	EXON_MRNA	EXON_MRNA:INTRON	GARS1	ENSG00000106105.15	ENST00000675051.1:ENST00000470392.2:ENST00000674643.1:ENST00000675529.1:ENST00000674807.1:ENST00000675810.1:ENST00000676088.1:ENST00000674815.1:ENST00000676403.1:ENST00000485784.2:ENST00000676210.1:ENST00000389266.8:ENST00000675693.1:ENST00000676259.1:ENST00000675651.1:ENST00000674616.1:ENST00000674737.1:ENST00000675859.1:ENST00000676140.1:ENST00000674969.1:ENST00000676164.1:ENST00000675886.1:ENST00000444666.6:ENST00000675587.1:ENST00000674851.1:ENST00000675863.1:ENST00000465748.2:ENST00000496643.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	53	2	2.34775	3.5166950000000003	4.68564	0.00816201	0.00466011	0.0766625	0.0629753
chr1	114406349	114406440	526832	0	-	0.373626	(0.35,0.378]	chr1	62073	2	INTRON	INTRON	TRIM33	ENSG00000197323.12	ENST00000358465.7:ENST00000369543.6:ENST00000448034.5:ENST00000476908.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	75	2	3.37175	3.51663	3.66151	0.00236696	4.717e-4	0.043778	0.0196294
chr6	30314582	30314682	3076872	0	-	0.39	(0.378,0.408]	chr6	286152	1	SS3_PROX	SS3_PROX:INTRON	HCG18	ENSG00000231074.10	ENST00000665953.1:ENST00000670397.1:ENST00000659132.1:ENST00000659836.1:ENST00000669374.1:ENST00000653541.1:ENST00000670071.1:ENST00000666294.1:ENST00000657247.1:ENST00000654996.1:ENST00000653301.1:ENST00000658695.1:ENST00000664861.1:ENST00000668974.1:ENST00000654915.1:ENST00000660593.1:ENST00000687430.1:ENST00000656629.1:ENST00000602550.5:ENST00000687815.1:ENST00000449544.6:ENST00000426882.6:ENST00000438412.6:ENST00000602698.6:ENST00000454129.5:ENST00000444126.5:ENST00000602290.2:ENST00000412685.8:ENST00000602861.6:ENST00000454269.6:ENST00000686575.1:ENST00000687471.1:ENST00000691282.1:ENST00000413358.6:ENST00000602498.1	lncRNA	lncRNA	lncRNA	lncRNA	1	33	2	2.92665	3.51663	4.10661	0.0399023	0.0086017	0.143072	0.083729
chr9	94421822	94421922	4162637	0	+	0.4	(0.378,0.408]	chr9	379491	62	INTRON	INTRON	MFSD14B	ENSG00000148110.17	ENST00000375344.8	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	2.92665	3.51663	4.10661	0.0399023	0.0086017	0.143072	0.083729
chr1	174252143	174252243	258041	0	+	0.45	(0.44,0.476]	chr1	30768	3	SS3_PROX	SS3_PROX:INTRON	RABGAP1L	ENSG00000152061.24	ENST00000357444.10:ENST00000251507.8:ENST00000681986.1:ENST00000457696.1	protein_coding	protein_coding	protein_coding	protein_coding	2	42	2	2.00609	3.51656	5.02703	0.0360127	0.00278015	0.152355	0.0469265
chr16	546120	546218	6272397	0	+	0.612245	(0.57,1]	chr16	598580	24	INTRON	INTRON	CAPN15	ENSG00000103326.12	ENST00000219611.7:ENST00000562370.5:ENST00000568988.5:ENST00000637507.1	protein_coding	protein_coding	protein_coding	protein_coding	2	39	2	3.2676	3.5164799999999996	3.76536	0.00176203	1.35835e-4	0.0376652	0.0100405
chr10	113910526	113910625	4527414	0	+	0.30303	(0.28,0.32]	chr10	417479	21	UTR3	UTR3:EXON_MRNA	NHLRC2	ENSG00000196865.4	ENST00000369301.3	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	2.60656	3.51643	4.4263	0.0330296	0.0256827	0.133816	0.133676
chr5	54038407	54038507	2618188	0	-	0.3	(0.28,0.32]	chr5	248835	1264	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	36	2	2.60656	3.51643	4.4263	0.0330296	0.0256827	0.133816	0.133676
chr7	155720441	155720541	3452665	0	+	0.32	(0.28,0.32]	chr7	322702	16	INTRON	INTRON	RBM33	ENSG00000184863.11	ENST00000401878.8:ENST00000307403.6:ENST00000440108.5:ENST00000392761.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	36	2	2.60656	3.51643	4.4263	0.0330296	0.0256827	0.133816	0.133676
chr1	156137854	156137944	230673	0	+	0.544444	(0.515,0.57]	chr1	27220	2	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	LMNA	ENSG00000160789.24	ENST00000368301.6:ENST00000676385.2:ENST00000675939.1:ENST00000675667.1:ENST00000675989.1:ENST00000676283.1:ENST00000674720.1:ENST00000496738.6:ENST00000674518.1:ENST00000676208.1:ENST00000674600.1:ENST00000675874.1:ENST00000676434.1:ENST00000684195.1:ENST00000683032.1:ENST00000682650.1:ENST00000361308.9:ENST00000368300.9:ENST00000675881.1:ENST00000675455.1:ENST00000677389.1:ENST00000368299.7:ENST00000448611.6:ENST00000675431.1:ENST00000368297.5:ENST00000473598.6:ENST00000506981.1:ENST00000683773.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	47	2	1.60221	3.5161999999999995	5.43019	0.0581855	2.60422e-4	0.188704	0.0148796
chr1	1804218	1804318	361959	0	-	0.55	(0.515,0.57]	chr1	42264	4	SS5_PROX	SS5_PROX:INTRON	GNB1	ENSG00000078369.18	ENST00000610897.4:ENST00000615252.4:ENST00000378609.9:ENST00000471354.1:ENST00000439272.6:ENST00000434686.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	30	2	2.43589	3.516095	4.5963	0.0370871	0.00370287	0.139194	0.0561162
chr11	3694655	3694752	4894113	0	-	0.536082	(0.515,0.57]	chr11	458769	9	INTRON	INTRON	NUP98	ENSG00000110713.17	ENST00000359171.8:ENST00000324932.12:ENST00000650171.1:ENST00000355260.7:ENST00000429801.5:ENST00000524563.1:ENST00000530345.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	30	2	2.43589	3.516095	4.5963	0.0370871	0.00370287	0.139194	0.0561162
chr12	79838449	79838548	5375563	0	-	0.545455	(0.515,0.57]	chr12	512772	56	INTRON	INTRON	PPP1R12A	ENSG00000058272.19	ENST00000261207.9:ENST00000450142.7:ENST00000437004.6:ENST00000546369.5:ENST00000550107.5:ENST00000547330.5:ENST00000550510.5:ENST00000548318.1	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	2.43589	3.516095	4.5963	0.0370871	0.00370287	0.139194	0.0561162
chr16	12744715	12744815	6447268	0	-	0.55	(0.515,0.57]	chr16	621153	393	INTRON	INTRON	CPPED1	ENSG00000103381.12	ENST00000381774.9:ENST00000433677.6:ENST00000261660.4	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	2.43589	3.516095	4.5963	0.0370871	0.00370287	0.139194	0.0561162
chr18	51054387	51054485	6901870	0	+	0.367347	(0.35,0.378]	chr18	683867	22	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	SMAD4	ENSG00000141646.15	ENST00000398417.6:ENST00000342988.8:ENST00000592911.5:ENST00000611848.2:ENST00000588745.5:ENST00000592186.5:ENST00000585448.1:ENST00000591126.5:ENST00000684953.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	44	2	2.10859	3.51607	4.92355	0.0272722	0.00573514	0.136494	0.0657377
chr7	10594762	10594862	3482727	0	-	0.37	(0.35,0.378]	chr7	325772	328	INTRON	INTRON	MGC4859	ENSG00000283117.1	ENST00000634803.1	lncRNA	lncRNA	lncRNA	lncRNA	2	44	2	2.10859	3.51607	4.92355	0.0272722	0.00573514	0.136494	0.0657377
chr19	2776899	2776998	7116696	0	-	0.545455	(0.515,0.57]	chr19	715508	63	INTRON	INTRON	SGTA	ENSG00000104969.11	ENST00000221566.7:ENST00000678109.1:ENST00000676984.1:ENST00000677513.1:ENST00000676943.1:ENST00000677731.1:ENST00000679138.1:ENST00000677562.1:ENST00000678595.1:ENST00000677754.1:ENST00000677149.1:ENST00000678577.1:ENST00000589251.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	60	2	3.40388	3.516045	3.62821	0.00142538	4.12866e-4	0.0340865	0.0181365
chr1	8610572	8610671	371707	0	-	0.292929	(0.28,0.32]	chr1	43521	199	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000400907.6:ENST00000656437.1:ENST00000659924.1:ENST00000480342.5:ENST00000514428.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	36	2	2.29724	3.5159900000000004	4.73474	0.0554156	0.0162835	0.18407	0.101453
chr10	73085289	73085388	4647731	0	-	0.292929	(0.28,0.32]	chr10	427557	28	INTRON	INTRON	P4HA1	ENSG00000122884.13	ENST00000394890.7:ENST00000307116.6:ENST00000373008.6:ENST00000440381.5:ENST00000263556.3	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	2.29724	3.5159900000000004	4.73474	0.0554156	0.0162835	0.18407	0.101453
chr2	196784556	196784656	1306357	0	-	0.3	(0.28,0.32]	chr2	136574	3	SS5_PROX	SS5_PROX:INTRON	GTF3C3	ENSG00000119041.11	ENST00000263956.8:ENST00000651042.1:ENST00000448087.5:ENST00000409364.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	36	2	2.29724	3.5159900000000004	4.73474	0.0554156	0.0162835	0.18407	0.101453
chr5	87370056	87370156	2668482	0	-	0.32	(0.28,0.32]	chr5	252550	508	INTRON	INTRON	CCNH	ENSG00000134480.16	ENST00000645953.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	1	36	2	2.29724	3.5159900000000004	4.73474	0.0554156	0.0162835	0.18407	0.101453
chr5	104126999	104127099	2441685	0	+	0.32	(0.28,0.32]	chr5	234410	217	INTRON	INTRON	LINC02163	ENSG00000251026.2	ENST00000662211.1:ENST00000666145.1	lncRNA	lncRNA	lncRNA	lncRNA	1	36	2	2.29724	3.5159900000000004	4.73474	0.0554156	0.0162835	0.18407	0.101453
chr6	87185745	87185845	2913560	0	+	0.29	(0.28,0.32]	chr6	275281	155	INTRON	INTRON	ZNF292	ENSG00000188994.13	ENST00000369577.8:ENST00000369578.6:ENST00000518845.1:ENST00000339907.8:ENST00000496806.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	36	2	2.29724	3.5159900000000004	4.73474	0.0554156	0.0162835	0.18407	0.101453
chr7	44689831	44689931	3315134	0	+	0.3	(0.28,0.32]	chr7	307952	76	INTRON	INTRON	OGDH	ENSG00000105953.16	ENST00000439616.6:ENST00000449767.5:ENST00000447398.5:ENST00000222673.6:ENST00000444676.5	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	2.29724	3.5159900000000004	4.73474	0.0554156	0.0162835	0.18407	0.101453
chr2	190896767	190896867	959642	0	+	0.32	(0.28,0.32]	chr2	104167	3	INTRON	INTRON	GLS	ENSG00000115419.13	ENST00000320717.8:ENST00000338435.8:ENST00000469774.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	67	2	1.68411	3.51588	5.34765	0.0323543	0.00287138	0.145026	0.0474836
chr3	141995836	141995934	1833901	0	-	0.316327	(0.28,0.32]	chr3	184326	3	INTRON	INTRON	TFDP2	ENSG00000114126.18	ENST00000489671.6:ENST00000499676.5:ENST00000486111.5:ENST00000477292.5:ENST00000495310.5:ENST00000467072.5:ENST00000487734.5:ENST00000479040.5:ENST00000467667.5:ENST00000478006.5:ENST00000497579.5:ENST00000464782.5:ENST00000488107.6:ENST00000475734.5:ENST00000471095.5:ENST00000494358.5:ENST00000467634.1:ENST00000495095.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	67	2	1.68411	3.51588	5.34765	0.0323543	0.00287138	0.145026	0.0474836
chr1	100146509	100146607	172217	0	+	0.571429	(0.57,1]	chr1	18699	20	INTRON	INTRON	TRMT13	ENSG00000122435.11	ENST00000370141.8	protein_coding	protein_coding	protein_coding	protein_coding	6	92	2	3.35702	3.5154699999999997	3.67392	9.51745e-6	2.36592e-6	0.0022362	0.00107098
chr11	32917188	32917288	4764955	0	+	0.34	(0.32,0.35]	chr11	440609	235	INTRON	INTRON	QSER1	ENSG00000060749.16	ENST00000650167.2:ENST00000399302.7:ENST00000527250.5	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	2.96746	3.515225	4.06299	0.0559439	0.00815799	0.165463	0.0810802
chr1	193042049	193042149	612695	0	-	0.44	(0.408,0.44]	chr1	72474	120	INTRON	INTRON	UCHL5	ENSG00000116750.14	ENST00000367455.8:ENST00000367454.6:ENST00000367450.7:ENST00000367451.8:ENST00000367449.5:ENST00000367448.5:ENST00000421683.1	protein_coding	protein_coding	protein_coding	protein_coding	5	150	2	3.25157	3.515205	3.77884	4.51895e-5	2.21619e-5	0.00546706	0.00383947
chr1	20783708	20783807	389833	0	-	0.414141	(0.408,0.44]	chr1	46582	28	INTRON	INTRON	HP1BP3	ENSG00000127483.19	ENST00000438032.6:ENST00000312239.10:ENST00000424732.5:ENST00000417710.5:ENST00000375000.5:ENST00000437575.5:ENST00000419490.5:ENST00000414993.1:ENST00000443615.1	protein_coding	protein_coding	protein_coding	protein_coding	7	206	2	3.3507	3.514925	3.67915	4.585e-5	6.30939e-7	0.00585749	4.33328e-4
chr22	26474307	26474404	7564035	0	-	0.371134	(0.35,0.378]	chr22	773883	10	INTRON	INTRON	HPS4	ENSG00000100099.21	ENST00000398145.7:ENST00000466781.5:ENST00000439453.5:ENST00000336873.9:ENST00000402105.7:ENST00000464362.5:ENST00000429411.5:ENST00000496385.5:ENST00000422379.2:ENST00000459918.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	50	2	2.28125	3.514925	4.7486	0.0182271	0.00418965	0.107842	0.0591344
chr5	179703392	179703479	2560731	0	+	0.494253	(0.476,0.515]	chr5	244872	4	INTRON	INTRON	CANX	ENSG00000127022.16	ENST00000681674.1:ENST00000681712.1:ENST00000681903.1:ENST00000680406.1:ENST00000502296.6:ENST00000504734.5:ENST00000452673.6:ENST00000679719.1:ENST00000679523.1:ENST00000679395.1:ENST00000681504.1:ENST00000679642.1:ENST00000681894.1:ENST00000680504.1:ENST00000681265.1:ENST00000680894.1:ENST00000680812.1:ENST00000680614.1:ENST00000680985.1:ENST00000680837.1:ENST00000680827.1:ENST00000681576.1:ENST00000680984.1:ENST00000680042.1:ENST00000681762.1:ENST00000502498.6:ENST00000681476.1:ENST00000681072.1:ENST00000247461.9:ENST00000513246.6:ENST00000680618.1:ENST00000502673.6:ENST00000680092.1:ENST00000506654.6:ENST00000514032.5:ENST00000681733.1:ENST00000679471.1:ENST00000679527.1:ENST00000680006.1:ENST00000681398.1:ENST00000681431.1:ENST00000680013.1:ENST00000681076.1:ENST00000681168.1:ENST00000509563.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	33	2	3.01197	3.5148699999999997	4.01777	0.0411361	0.00633162	0.1451	0.0722266
chr19	15327336	15327436	7147354	0	-	0.46	(0.44,0.476]	chr19	721965	470	INTRON	INTRON	BRD4	ENSG00000141867.19	ENST00000679869.1:ENST00000360016.9:ENST00000594841.5:ENST00000597315.5:ENST00000601941.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	69	2	3.35227	3.51483	3.67739	0.0022005699999999998	3.8961e-4	0.0417893	0.0177751
chr3	6607141	6607241	1357315	0	+	0.48	(0.476,0.515]	chr3	142522	227	INTRON	INTRON	ENSG00000189229	ENSG00000189229.12	ENST00000433639.1:ENST00000655754.1:ENST00000658468.1:ENST00000669512.1:ENST00000667028.1:ENST00000655541.1:ENST00000668643.1:ENST00000671568.1:ENST00000671036.1:ENST00000669798.1:ENST00000655753.1:ENST00000655856.1:ENST00000658398.1:ENST00000661518.1:ENST00000661279.1:ENST00000655495.1:ENST00000663041.1:ENST00000659827.1:ENST00000667716.1:ENST00000668416.1:ENST00000658133.1:ENST00000342990.4:ENST00000660054.1:ENST00000671370.1	lncRNA	lncRNA	lncRNA	lncRNA	3	54	2	1.79187	3.51478	5.23769	0.0362169	5.17244e-4	0.138959	0.0203753
chr1	203818269	203818369	296909	0	+	0.35	(0.32,0.35]	chr1	34146	3	SS3_PROX	SS3_PROX:INTRON	ZC3H11A:ZBED6	ENSG00000058673.17:ENSG00000257315.3	ENST00000367210.3:ENST00000453771.5:ENST00000432282.5:ENST00000638800.1:ENST00000367214.5:ENST00000639812.1:ENST00000367212.7:ENST00000332127.8:ENST00000550078.2:ENST00000495527.5:ENST00000640465.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	46	2	2.19668	3.514775	4.83287	0.021398	0.0095071	0.123719	0.0817766
chr1	110373994	110374093	182692	0	+	0.373737	(0.35,0.378]	chr1	20259	11	INTRON	INTRON	LAMTOR5-AS1	ENSG00000224699.10	ENST00000626572.2	lncRNA	lncRNA	lncRNA	lncRNA	3	61	2	2.06612	3.51471	4.9633	0.0164908	0.00198929	0.102419	0.0411469
chr7	155664175	155664274	3452090	0	+	0.232323	[0,0.28]	chr7	322642	189	INTRON	INTRON	RBM33	ENSG00000184863.11	ENST00000287912.7:ENST00000401878.8:ENST00000392759.7	protein_coding	protein_coding	protein_coding	protein_coding	3	64	2	1.91898	3.5146550000000003	5.11033	0.0266433	0.00991388	0.134413	0.0838372
chr3	138674881	138674981	1829876	0	-	0.48	(0.476,0.515]	chr3	183941	93	INTRON	INTRON	PIK3CB	ENSG00000051382.9	ENST00000674063.1:ENST00000289153.6:ENST00000477593.5:ENST00000469284.6:ENST00000544716.5:ENST00000462898.5:ENST00000481749.5:ENST00000493568.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	59	2	1.99457	3.514615	5.03466	0.009924	0.00252065	0.0877296	0.0446195
chr15	67599690	67599789	6053844	0	+	0.353535	(0.35,0.378]	chr15	576409	64	INTRON	INTRON	MAP2K5	ENSG00000137764.20	ENST00000178640.10:ENST00000560591.5:ENST00000395476.6:ENST00000354498.9:ENST00000439036.5:ENST00000558392.5:ENST00000559262.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	44	2	2.04358	3.514595	4.98561	0.0329533	0.00474226	0.145171	0.0600445
chr3	143037521	143037607	1529463	0	+	0.360465	(0.35,0.378]	chr3	159439	2	SS5_PROX	SS5_PROX:INTRON	U2SURP	ENSG00000163714.18	ENST00000488497.7:ENST00000473835.7:ENST00000493598.6:ENST00000463563.6:ENST00000480029.5:ENST00000467348.1:ENST00000461844.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	44	2	2.04358	3.514595	4.98561	0.0329533	0.00474226	0.145171	0.0600445
chr22	17640883	17640983	7475041	0	+	0.47	(0.44,0.476]	chr22	762152	16	INTRON	INTRON	BCL2L13	ENSG00000099968.18	ENST00000399781.5:ENST00000399782.5:ENST00000337612.9:ENST00000418951.6:ENST00000538149.5:ENST00000543133.5:ENST00000611738.4:ENST00000616863.4:ENST00000618481.4:ENST00000498133.5:ENST00000317582.10:ENST00000464649.1:ENST00000493680.5:ENST00000355028.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	45	2	1.9039	3.5145150000000003	5.12513	0.0501498	7.96486e-4	0.156383	0.0258804
chr1	109412576	109412674	521169	0	-	0.336735	(0.32,0.35]	chr1	61240	5	EXON_LNCRNA	EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PSMA5	ENSG00000143106.13	ENST00000271308.9:ENST00000490870.5:ENST00000538610.5:ENST00000484563.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	46	2	1.95271	3.5145	5.07629	0.0431213	0.00468114	0.162255	0.0600108
chr10	12164454	12164549	4394300	0	+	0.431579	(0.408,0.44]	chr10	405416	1	UTR3	UTR3:EXON_MRNA:INTRON	SEC61A2	ENSG00000065665.21	ENST00000379033.7:ENST00000298428.14:ENST00000475268.5:ENST00000495368.1:ENST00000304267.12:ENST00000379020.8:ENST00000419021.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	33	2	3.02513	3.51449	4.00385	0.0454568	0.0059965	0.149888	0.0700606
chr17	67237936	67238036	6825757	0	-	0.42	(0.408,0.44]	chr17	674543	188	INTRON	INTRON	HELZ	ENSG00000198265.12	ENST00000358691.10:ENST00000579953.5:ENST00000580168.5:ENST00000417253.7:ENST00000580662.5:ENST00000584641.5:ENST00000581159.5:ENST00000580963.1:ENST00000579861.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:non_stop_decay:nonsense_mediated_decay:processed_transcript	1	33	2	3.02513	3.51449	4.00385	0.0454568	0.0059965	0.149888	0.0700606
chr21	46517177	46517276	7423091	0	+	0.414141	(0.408,0.44]	chr21	757010	52	INTRON	INTRON	DIP2A	ENSG00000160305.18	ENST00000417564.3:ENST00000651436.1:ENST00000400274.5:ENST00000457905.7:ENST00000466639.5:ENST00000435722.7:ENST00000473752.5:ENST00000494435.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	33	2	3.02513	3.51449	4.00385	0.0454568	0.0059965	0.149888	0.0700606
chr7	103321332	103321431	3594084	0	-	0.474747	(0.44,0.476]	chr7	335489	11	INTRON	INTRON	DNAJC2	ENSG00000105821.15	ENST00000379263.8:ENST00000249270.11:ENST00000475065.5:ENST00000464253.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	55	2	1.90381	3.51447	5.12513	0.0260626	7.96486e-4	0.122153	0.0258804
chr20	6014266	6014365	7230630	0	+	0.474747	(0.44,0.476]	chr20	734835	40	INTRON	INTRON	CRLS1	ENSG00000088766.12	ENST00000452938.5:ENST00000378863.9:ENST00000378868.4:ENST00000609154.1:ENST00000489345.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	45	2	1.96602	3.51445	5.06288	0.0426807	0.00102416	0.148082	0.0294041
chr1	246551702	246551802	680839	0	-	0.49	(0.476,0.515]	chr1	79809	4	SS3_PROX	SS3_PROX:INTRON	TFB2M	ENSG00000162851.8	ENST00000366514.5	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	2.69967	3.51441	4.32915	0.0195838	0.0124637	0.109483	0.0973643
chr6	36519936	36520035	3089103	0	-	0.383838	(0.378,0.408]	chr6	288960	17	INTRON	INTRON	STK38	ENSG00000112079.9	ENST00000229812.8	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	2.71183	3.51441	4.31699	0.0250408	0.0170789	0.12011	0.110899
chr6	143450362	143450462	3242367	0	-	0.51	(0.476,0.515]	chr6	301160	4	SS5_PROX	SS5_PROX:INTRON	ADAT2	ENSG00000189007.16	ENST00000237283.9:ENST00000367593.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	34	2	2.69967	3.51441	4.32915	0.0195838	0.0124637	0.109483	0.0973643
chr6	155308090	155308190	3251656	0	-	0.38	(0.378,0.408]	chr6	302127	47	INTRON	INTRON	TFB1M	ENSG00000029639.11	ENST00000367166.5:ENST00000470239.1:ENST00000475849.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	32	2	2.71183	3.51441	4.31699	0.0250408	0.0170789	0.12011	0.110899
chr8	28175822	28175921	3723067	0	+	0.50505	(0.476,0.515]	chr8	346112	134	INTRON	INTRON	ELP3	ENSG00000134014.17	ENST00000521015.5:ENST00000380353.8:ENST00000537665.2:ENST00000523687.5:ENST00000524103.5:ENST00000256398.13:ENST00000518112.5:ENST00000519261.5:ENST00000523357.5:ENST00000517975.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	34	2	2.69967	3.51441	4.32915	0.0195838	0.0124637	0.109483	0.0973643
chrX	45012709	45012808	7650002	0	+	0.40404	(0.378,0.408]	chrX	782751	13	INTRON	INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000675440.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000621147.5:ENST00000475233.1:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	32	2	2.71183	3.51441	4.31699	0.0250408	0.0170789	0.12011	0.110899
chr4	126515725	126515825	2235866	0	-	0.44	(0.408,0.44]	chr4	219023	502	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	2	42	2	2.27464	3.51431	4.75398	0.0158016	0.00703931	0.109464	0.0718189
chr7	101819379	101819479	3366382	0	+	0.44	(0.408,0.44]	chr7	315214	4	SS5_PROX	SS5_PROX:INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000497815.5:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000607092.1:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000558469.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	42	2	2.27464	3.51431	4.75398	0.0158016	0.00703931	0.109464	0.0718189
chr6	36443530	36443626	2853918	0	+	0.59375	(0.57,1]	chr6	269698	1	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	KCTD20	ENSG00000112078.14	ENST00000536244.5:ENST00000373731.7:ENST00000483557.5:ENST00000443316.2:ENST00000474988.5:ENST00000498267.5:ENST00000481911.5:ENST00000449081.6:ENST00000265344.8:ENST00000460983.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	62	2	2.58898	3.5141999999999998	4.43942	0.00134929	1.72912e-6	0.0338207	8.78167e-4
chr2	63590302	63590402	795762	0	+	0.33	(0.32,0.35]	chr2	88902	1	SS3_ADJ	SS3_ADJ:SS3_PROX:SS5_PROX:INTRON	MDH1	ENSG00000014641.21	ENST00000544381.4:ENST00000485781.5:ENST00000409908.5:ENST00000233114.13:ENST00000539945.7:ENST00000442225.5:ENST00000409476.5:ENST00000485155.1:ENST00000436321.5:ENST00000462944.1:ENST00000454035.5:ENST00000472098.5:ENST00000421012.2:ENST00000432309.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	108	2	3.02374	3.514185	4.00463	0.00133935	9.86358e-5	0.0335551	0.00835539
chr16	89894737	89894837	6422657	0	+	0.5	(0.476,0.515]	chr16	616767	3	SS3_PROX	SS3_PROX:INTRON	TCF25	ENSG00000141002.20	ENST00000640279.1:ENST00000263347.11:ENST00000263346.13:ENST00000568412.5:ENST00000566751.5:ENST00000562256.5:ENST00000568409.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	177	2	3.46398	3.514165	3.56435	2.13441e-5	6.28269e-6	0.00377331	0.00175994
chr9	72121118	72121218	4140979	0	+	0.34	(0.32,0.35]	chr9	377405	59	INTRON	INTRON	GDA	ENSG00000119125.17	ENST00000545168.5	protein_coding	protein_coding	protein_coding	protein_coding	3	111	2	3.27129	3.5141150000000003	3.75694	4.56534e-4	3.37248e-4	0.0196892	0.0163178
chr12	56644532	56644606	5335801	0	-	0.486486	(0.476,0.515]	chr12	510139	2	SS5_PROX	SS5_PROX:INTRON	ATP5F1B	ENSG00000110955.9	ENST00000262030.8:ENST00000548474.2:ENST00000547808.5:ENST00000551020.5:ENST00000552959.5:ENST00000553007.2:ENST00000548647.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	168	2	3.25181	3.514105	3.7764	2.01179e-5	1.31562e-5	0.00363316	0.00268963
chr12	110387369	110387462	5409029	0	-	0.419355	(0.408,0.44]	chr12	516438	2	SS5_PROX	SS5_PROX:INTRON	ANAPC7	ENSG00000196510.14	ENST00000455511.9:ENST00000450008.3:ENST00000546720.5:ENST00000552170.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	42	2	2.00768	3.51398	5.02028	0.035843	0.00303216	0.152216	0.0493883
chr4	159359398	159359495	2076115	0	+	0.42268	(0.408,0.44]	chr4	205360	14	UTR3	UTR3:EXON_MRNA	RAPGEF2	ENSG00000109756.10	ENST00000644474.1:ENST00000691494.1:ENST00000644902.1:ENST00000264431.8	protein_coding	protein_coding	protein_coding	protein_coding	2	42	2	2.00768	3.51398	5.02028	0.035843	0.00303216	0.152216	0.0493883
chr5	151776828	151776923	2521842	0	+	0.410526	(0.408,0.44]	chr5	241284	18	INTRON	INTRON	G3BP1	ENSG00000145907.16	ENST00000523519.5:ENST00000520578.6:ENST00000627077.2:ENST00000678976.1:ENST00000677408.1:ENST00000678070.1:ENST00000678964.1:ENST00000678925.1:ENST00000394123.7:ENST00000676978.1:ENST00000679289.1:ENST00000677493.1:ENST00000676644.1:ENST00000677757.1:ENST00000522761.6:ENST00000677909.1:ENST00000676827.1:ENST00000520177.6:ENST00000676634.1:ENST00000678854.1:ENST00000677602.1:ENST00000519832.1:ENST00000518726.5:ENST00000676911.1:ENST00000356245.8:ENST00000678646.1:ENST00000677381.1:ENST00000678904.1:ENST00000678910.1:ENST00000678101.1:ENST00000677105.1:ENST00000676813.1:ENST00000522367.6:ENST00000517947.5:ENST00000507878.7:ENST00000520006.2:ENST00000678369.1:ENST00000677433.1:ENST00000678564.1:ENST00000677252.1:ENST00000677369.1:ENST00000677284.1:ENST00000676894.1:ENST00000677923.1:ENST00000677323.1:ENST00000522666.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	71	2	3.05705	3.5138949999999998	3.97074	0.00658331	8.66152e-5	0.0701901	0.00783027
chr1	108697504	108697601	178183	0	+	0.278351	[0,0.28]	chr1	19360	1	INTRON	INTRON	PRPF38B	ENSG00000134186.12	ENST00000370025.9:ENST00000370021.1	protein_coding	protein_coding	protein_coding	protein_coding	7	302	2	3.32772	3.51388	3.70004	7.72078e-5	9.23781e-6	0.00784644	0.00218724
chr22	23203149	23203249	7483433	0	+	0.48	(0.476,0.515]	chr22	763541	34	INTRON	INTRON	BCR	ENSG00000186716.21	ENST00000479188.5:ENST00000359540.7:ENST00000305877.13:ENST00000463770.5:ENST00000487679.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	69	2	3.49411	3.513865	3.53362	0.00102391	9.23453e-4	0.029231300000000002	0.0278392
chr10	838288	838386	4541640	0	-	0.387755	(0.378,0.408]	chr10	419249	14	INTRON	INTRON	LARP4B	ENSG00000107929.16	ENST00000688365.1:ENST00000316157.8:ENST00000690516.1:ENST00000689323.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	32	2	2.36428	3.51383	4.66338	0.0441088	0.0103469	0.162255	0.0850389
chr4	40084398	40084497	1954137	0	+	0.393939	(0.378,0.408]	chr4	195686	14	INTRON	INTRON	N4BP2	ENSG00000078177.14	ENST00000261435.11:ENST00000511480.5:ENST00000515550.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	32	2	2.36428	3.51383	4.66338	0.0441088	0.0103469	0.162255	0.0850389
chr5	109781530	109781598	2449934	0	+	0.382353	(0.378,0.408]	chr5	234629	3	CDS	CDS:EXON_MRNA	MAN2A1	ENSG00000112893.10	ENST00000261483.5	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	2.36428	3.51383	4.66338	0.0441088	0.0103469	0.162255	0.0850389
chr7	90359412	90359511	3347389	0	+	0.393939	(0.378,0.408]	chr7	311993	38	INTRON	INTRON	GTPBP10	ENSG00000105793.16	ENST00000453512.5:ENST00000421719.5:ENST00000426366.5:ENST00000450619.5:ENST00000257659.12:ENST00000417207.5:ENST00000380058.7:ENST00000222511.11:ENST00000439832.5:ENST00000474503.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	32	2	2.36428	3.51383	4.66338	0.0441088	0.0103469	0.162255	0.0850389
chr8	124515345	124515445	4043925	0	-	0.39	(0.378,0.408]	chr8	368891	2	SS5_PROX	SS5_PROX:INTRON	TATDN1	ENSG00000147687.19	ENST00000522927.5:ENST00000276692.11:ENST00000630259.1:ENST00000523214.5:ENST00000519548.5:ENST00000522810.5:ENST00000517678.5:ENST00000519776.5:ENST00000521546.5:ENST00000521973.5:ENST00000605953.5:ENST00000522310.5:ENST00000520321.5:ENST00000519232.5:ENST00000520938.3:ENST00000523888.5:ENST00000523152.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	32	2	2.36428	3.51383	4.66338	0.0441088	0.0103469	0.162255	0.0850389
chr10	69150319	69150419	4444812	0	+	0.45	(0.44,0.476]	chr10	410023	169	INTRON	INTRON	VPS26A	ENSG00000122958.15	ENST00000373382.5:ENST00000395098.5:ENST00000489656.5:ENST00000263559.11:ENST00000497564.5:ENST00000490696.5:ENST00000467852.1:ENST00000489794.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	69	2	3.31011	3.51369	3.71727	0.00259023	3.2089e-4	0.0452934	0.0159645
chr7	129486520	129486619	3412101	0	+	0.373737	(0.35,0.378]	chr7	319005	8	UTR3	UTR3:EXON_MRNA	STRIP2	ENSG00000128578.10	ENST00000249344.7	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	2.83709	3.513655	4.19022	0.0209891	0.01435	0.122348	0.0966737
chr4	150994817	150994917	2271567	0	-	0.38	(0.378,0.408]	chr4	220921	654	INTRON	INTRON	LRBA	ENSG00000198589.14	ENST00000357115.9:ENST00000651943.2:ENST00000510413.5:ENST00000651035.1:ENST00000507224.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	61	2	2.0848	3.51365	4.9425	0.00697927	0.00452675	0.0754576	0.0595107
chr13	20020515	20020615	5453054	0	+	0.43	(0.408,0.44]	chr13	522478	5	INTRON	INTRON	ZMYM2	ENSG00000121741.17	ENST00000382874.6:ENST00000610343.5:ENST00000382871.3	protein_coding	protein_coding	protein_coding	protein_coding	4	112	2	3.20763	3.513455	3.81928	3.06208e-4	5.89253e-5	0.0161362	0.00630001
chr22	20524566	20524666	7479520	0	+	0.43	(0.408,0.44]	chr22	762963	2	SS5_PROX	SS5_PROX:INTRON	MED15	ENSG00000099917.17	ENST00000445987.5:ENST00000444094.5:ENST00000414658.5:ENST00000486656.5:ENST00000433831.5:ENST00000432052.5:ENST00000292733.11:ENST00000263205.11:ENST00000477824.5:ENST00000406969.5:ENST00000382974.6:ENST00000441501.5:ENST00000438962.1:ENST00000445189.5:ENST00000451058.5:ENST00000473028.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	112	2	3.20763	3.513455	3.81928	3.06208e-4	5.89253e-5	0.0161362	0.00630001
chr5	64824658	64824757	2365816	0	+	0.333333	(0.32,0.35]	chr5	228132	21	INTRON	INTRON	CWC27	ENSG00000153015.17	ENST00000685023.1:ENST00000693640.1:ENST00000693303.1:ENST00000381070.8:ENST00000691921.1:ENST00000688318.1:ENST00000688896.1:ENST00000689574.1:ENST00000693660.1:ENST00000687314.1:ENST00000692763.1:ENST00000693121.1:ENST00000689534.1:ENST00000692005.1:ENST00000607786.2:ENST00000692572.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	34	2	2.48693	3.513405	4.53988	0.0338094	0.0202178	0.146709	0.109913
chr7	23447988	23448088	3503442	0	-	0.33	(0.32,0.35]	chr7	326910	168	INTRON	INTRON	IGF2BP3	ENSG00000136231.14	ENST00000258729.8:ENST00000421467.6:ENST00000468263.5:ENST00000491719.5:ENST00000476938.5:ENST00000468005.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	34	2	2.48693	3.513405	4.53988	0.0338094	0.0202178	0.146709	0.109913
chr7	98178661	98178761	3358330	0	+	0.33	(0.32,0.35]	chr7	313269	66	INTRON	INTRON	LMTK2	ENSG00000164715.6	ENST00000297293.6	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	2.48693	3.513405	4.53988	0.0338094	0.0202178	0.146709	0.109913
chr9	5708362	5708462	4098098	0	+	0.35	(0.32,0.35]	chr9	373384	180	INTRON	INTRON	RIC1	ENSG00000107036.12	ENST00000251879.10:ENST00000414202.7:ENST00000418622.7:ENST00000545641.5	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	2.48693	3.513405	4.53988	0.0338094	0.0202178	0.146709	0.109913
chr9	109098658	109098758	4312390	0	-	0.34	(0.32,0.35]	chr9	396380	47	INTRON	INTRON	TMEM245	ENSG00000106771.13	ENST00000374586.8:ENST00000491854.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	34	2	2.48693	3.513405	4.53988	0.0338094	0.0202178	0.146709	0.109913
chr21	33437055	33437148	7396997	0	+	0.451613	(0.44,0.476]	chr21	753494	2	UTR3	UTR3:EXON_MRNA:INTRON	IFNGR2	ENSG00000159128.16	ENST00000290219.11:ENST00000381995.5:ENST00000405436.5:ENST00000696724.1:ENST00000421802.1	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	2.80275	3.5133400000000004	4.22393	0.0162322	0.0146513	0.109464	0.0982604
chr1	205108541	205108640	622296	0	-	0.343434	(0.32,0.35]	chr1	74008	30	INTRON	INTRON	RBBP5	ENSG00000117222.14	ENST00000367164.1:ENST00000264515.11:ENST00000484379.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	37	2	2.23182	3.5133199999999998	4.79482	0.068598	0.00447781	0.184298	0.0610799
chr17	28097928	28098028	6583074	0	+	0.35	(0.32,0.35]	chr17	639837	360	INTRON	INTRON	NLK	ENSG00000087095.13	ENST00000407008.8:ENST00000496808.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	37	2	2.23182	3.5133199999999998	4.79482	0.068598	0.00447781	0.184298	0.0610799
chr15	100574144	100574241	6268742	0	-	0.360825	(0.35,0.378]	chr15	597868	6	CDS	CDS:EXON_MRNA:EXON_LNCRNA	LINS1	ENSG00000140471.17	ENST00000314742.13:ENST00000559149.5:ENST00000561308.5:ENST00000560133.5:ENST00000560941.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	58	2	1.6599	3.5133149999999995	5.3667299999999996	0.0545616	3.99274e-4	0.165292	0.0179401
chr17	70062477	70062576	6828072	0	-	0.535354	(0.515,0.57]	chr17	675005	84	INTRON	INTRON	ENSG00000230258	ENSG00000230258.6	ENST00000435112.5:ENST00000587325.1	lncRNA	lncRNA	lncRNA	lncRNA	1	30	2	2.34087	3.5132749999999997	4.68568	0.0469761	0.00270027	0.151917	0.0479115
chr7	65394662	65394762	3322662	0	+	0.54	(0.515,0.57]	chr7	308935	54	INTRON	INTRON	ZNF92	ENSG00000146757.14	ENST00000357512.3:ENST00000431504.1:ENST00000328747.12:ENST00000450302.2	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	2.34087	3.5132749999999997	4.68568	0.0469761	0.00270027	0.151917	0.0479115
chr7	156963630	156963721	3453834	0	+	0.516484	(0.515,0.57]	chr7	322867	6	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NOM1	ENSG00000146909.8	ENST00000275820.4:ENST00000472491.1:ENST00000469271.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	30	2	2.34087	3.5132749999999997	4.68568	0.0469761	0.00270027	0.151917	0.0479115
chr15	20454973	20455073	6118420	0	-	0.38	(0.378,0.408]	chr15	582430	3	SS3_PROX	SS3_PROX:INTRON	HERC2P3	ENSG00000180229.12	ENST00000428453.5:ENST00000437318.5:ENST00000430598.5:ENST00000429257.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	1	35	2	2.60296	3.5132250000000003	4.42349	0.0267851	0.00992961	0.123349	0.0877296
chr4	110063748	110063848	2226383	0	-	0.39	(0.378,0.408]	chr4	218012	36	INTRON	INTRON	ELOVL6	ENSG00000170522.10	ENST00000394607.7:ENST00000302274.8:ENST00000514184.5:ENST00000506625.5:ENST00000506461.1:ENST00000503885.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	35	2	2.60296	3.5132250000000003	4.42349	0.0267851	0.00992961	0.123349	0.0877296
chr22	47858346	47858445	7541649	0	+	0.343434	(0.32,0.35]	chr22	770790	20	INTRON	INTRON	ENSG00000224271	ENSG00000224271.7	ENST00000664761.1:ENST00000650683.1:ENST00000651536.1:ENST00000651445.1:ENST00000650660.1:ENST00000651056.1:ENST00000652399.1:ENST00000652123.1:ENST00000652030.2:ENST00000651403.1:ENST00000652228.1:ENST00000651124.1:ENST00000651003.1:ENST00000651948.2:ENST00000651293.1:ENST00000651939.1:ENST00000651638.1:ENST00000670853.1:ENST00000652080.1:ENST00000651294.1:ENST00000651538.1:ENST00000651033.1:ENST00000651584.1	lncRNA	lncRNA	lncRNA	lncRNA	1	37	2	2.30673	3.5132149999999998	4.7197	0.0584434	0.00568521	0.167723	0.0678837
chr10	86486732	86486832	4659012	0	-	0.48	(0.476,0.515]	chr10	429282	124	INTRON	INTRON	WAPL	ENSG00000062650.20	ENST00000298767.10	protein_coding	protein_coding	protein_coding	protein_coding	3	93	2	2.77151	3.51321	4.25491	0.00288481	1.76524e-5	0.0475859	0.0031975
chr19	57685385	57685485	7104765	0	+	0.48	(0.476,0.515]	chr19	713104	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ZNF551	ENSG00000204519.11	ENST00000601064.1:ENST00000282296.10:ENST00000599402.1:ENST00000596085.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	47	2	2.41121	3.5132000000000003	4.61519	0.0110342	0.00528365	0.0873897	0.0656295
chr7	105536282	105536373	3375726	0	+	0.516484	(0.515,0.57]	chr7	316048	2	SS3_PROX	SS3_PROX:INTRON	RINT1	ENSG00000135249.8	ENST00000467392.5:ENST00000482041.5:ENST00000493041.5:ENST00000257700.7:ENST00000497979.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	68	2	1.50809	3.5132	5.51831	0.0294196	6.99834e-5	0.128055	0.00692586
chr22	20094995	20095095	7478386	0	+	0.42	(0.408,0.44]	chr22	762740	2	SS5_PROX	SS5_PROX:INTRON	DGCR8	ENSG00000128191.16	ENST00000383024.6:ENST00000351989.8:ENST00000495826.5:ENST00000407755.1:ENST00000498171.5:ENST00000491892.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	212	2	3.49032	3.51318	3.53604	9.97095e-6	4.58934e-6	0.00229529	0.00157828
chr18	189564	189663	6855140	0	+	0.525253	(0.515,0.57]	chr18	679521	89	INTRON	INTRON	USP14	ENSG00000101557.15	ENST00000582707.5:ENST00000400266.7:ENST00000261601.8:ENST00000578942.5:ENST00000383589.6:ENST00000583119.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	46	2	2.11724	3.5131799999999997	4.90912	0.0110335	0.0021669	0.0927187	0.0417866
chr7	74882062	74882162	3556671	0	-	0.53	(0.515,0.57]	chr7	331156	133	INTRON	INTRON	STAG3L2	ENSG00000277072.5	ENST00000651031.1:ENST00000650988.1:ENST00000652688.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	6	122	2	2.46174	3.513135	4.56453	6.79105e-4	1.59451e-6	0.0238419	7.59456e-4
chr1	236846858	236846958	343027	0	+	0.41	(0.408,0.44]	chr1	39904	79	INTRON	INTRON	MTR	ENSG00000116984.15	ENST00000680454.1:ENST00000366577.10:ENST00000674797.2:ENST00000679569.1:ENST00000650888.1:ENST00000463959.1:ENST00000535889.6:ENST00000651455.1:ENST00000681102.1:ENST00000679842.1:ENST00000681177.1:ENST00000681937.1:ENST00000366576.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	46	2	2.16746	3.51309	4.85872	0.024436	0.00221911	0.12011	0.0435144
chr14	101860675	101860775	5819502	0	+	0.42	(0.408,0.44]	chr14	551879	34	INTRON	INTRON	PPP2R5C	ENSG00000078304.20	ENST00000694906.1:ENST00000422945.6:ENST00000328724.9:ENST00000350249.7:ENST00000557621.5:ENST00000556307.5:ENST00000553730.5:ENST00000334743.9:ENST00000445439.7:ENST00000557095.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	46	2	2.16746	3.51309	4.85872	0.024436	0.00221911	0.12011	0.0435144
chr22	42975361	42975461	7597954	0	-	0.43	(0.408,0.44]	chr22	778194	156	INTRON	INTRON	PACSIN2	ENSG00000100266.19	ENST00000263246.8:ENST00000453643.5:ENST00000422336.5:ENST00000445706.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	46	2	2.16746	3.51309	4.85872	0.024436	0.00221911	0.12011	0.0435144
chr2	54992995	54993095	1120829	0	-	0.53	(0.515,0.57]	chr2	120142	49	INTRON	INTRON	RTN4	ENSG00000115310.19	ENST00000394609.6:ENST00000404909.5:ENST00000394611.6:ENST00000317610.11:ENST00000357732.8:ENST00000337526.11:ENST00000357376.7:ENST00000405240.5:ENST00000438462.1	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	2.52504	3.5130299999999997	4.50102	0.029342	0.00510768	0.128055	0.0646039
chr7	35828353	35828453	3306167	0	+	0.54	(0.515,0.57]	chr7	306967	267	INTRON	INTRON	SEPTIN7	ENSG00000122545.21	ENST00000399034.7:ENST00000435235.6:ENST00000350320.11:ENST00000672279.1:ENST00000634600.1:ENST00000635669.1:ENST00000635175.1:ENST00000475109.5:ENST00000635047.1:ENST00000493626.5:ENST00000473201.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	30	2	2.52504	3.5130299999999997	4.50102	0.029342	0.00510768	0.128055	0.0646039
chr8	99579632	99579732	3816976	0	+	0.52	(0.515,0.57]	chr8	353305	16	INTRON	INTRON	VPS13B	ENSG00000132549.20	ENST00000683334.1:ENST00000357162.7:ENST00000358544.7:ENST00000682153.1:ENST00000682358.1:ENST00000521559.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	30	2	2.52504	3.5130299999999997	4.50102	0.029342	0.00510768	0.128055	0.0646039
chr15	60380449	60380548	6195152	0	-	0.363636	(0.35,0.378]	chr15	590323	54	INTRON	INTRON	ANXA2	ENSG00000182718.18	ENST00000396024.7:ENST00000559818.6:ENST00000679109.1:ENST00000676687.1:ENST00000558169.6:ENST00000557906.6:ENST00000558558.6:ENST00000559113.6:ENST00000559780.6:ENST00000559956.6:ENST00000560468.6:ENST00000678870.1:ENST00000678061.1:ENST00000678450.1:ENST00000677968.1:ENST00000451270.7:ENST00000558985.6:ENST00000678796.1:ENST00000559647.2:ENST00000332680.8:ENST00000560014.5:ENST00000504475.6:ENST00000421017.6:ENST00000560466.5:ENST00000558132.5:ENST00000561022.5:ENST00000560367.6:ENST00000558503.6:ENST00000558998.5:ENST00000559559.5:ENST00000560165.5:ENST00000560389.5:ENST00000559725.5:ENST00000559350.5:ENST00000558986.5:ENST00000677258.1:ENST00000559467.5:ENST00000561445.5:ENST00000557937.5:ENST00000557904.5:ENST00000559370.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	46	2	2.54421	3.513025	4.48184	0.0191702	0.00630238	0.108861	0.0722266
chrX	123991776	123991875	7717053	0	+	0.525253	(0.515,0.57]	chrX	789462	280	INTRON	INTRON	STAG2	ENSG00000101972.20	ENST00000394477.5:ENST00000218089.13:ENST00000455404.5:ENST00000483575.5:ENST00000687810.1:ENST00000687071.1:ENST00000469481.1:ENST00000458700.5:ENST00000371160.5:ENST00000435103.5:ENST00000687852.1:ENST00000371145.8:ENST00000692982.1:ENST00000371157.7:ENST00000691035.1:ENST00000686802.1:ENST00000691383.1:ENST00000686127.1:ENST00000371144.7:ENST00000458176.5:ENST00000466748.5:ENST00000471107.1:ENST00000428941.5:ENST00000435215.5:ENST00000394478.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	96	2	2.79153	3.51289	4.23425	6.28135e-4	1.40595e-5	0.023031	0.00279379
chr10	78037615	78037702	4475916	0	+	0.413793	(0.408,0.44]	chr10	411987	3	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPS24	ENSG00000138326.21	ENST00000613865.5:ENST00000435275.5:ENST00000645440.1:ENST00000440692.6:ENST00000360830.9:ENST00000372360.9:ENST00000464716.6:ENST00000485708.7:ENST00000478655.6:ENST00000645698.1:ENST00000476545.6:ENST00000465692.2:ENST00000482069.5:ENST00000645195.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	64	2	1.58622	3.51281	5.4394	0.0291748	6.50925e-4	0.141552	0.0232863
chr19	2164565	2164665	6996175	0	+	0.64	(0.57,1]	chr19	693416	3	SS5_PROX	SS5_PROX:INTRON	DOT1L	ENSG00000104885.19	ENST00000398665.8:ENST00000686010.1:ENST00000452696.5:ENST00000478937.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	60	2	3.05625	3.5128	3.96935	8.84921e-5	4.27649e-5	0.00791674	0.00555805
chr20	44931332	44931408	7278155	0	+	0.473684	(0.44,0.476]	chr20	739961	1	SS3_PROX	SS3_PROX:INTRON	PABPC1L	ENSG00000101104.13	ENST00000255136.8:ENST00000217073.7:ENST00000537323.5:ENST00000217074.9:ENST00000490798.6:ENST00000476056.6:ENST00000674244.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	13	371	2	3.21555	3.512715	3.80988	6.68138e-6	1.24558e-8	0.00194394	3.84688e-5
chr1	23166565	23166665	398995	0	-	0.49	(0.476,0.515]	chr1	47812	330	INTRON	INTRON	LUZP1	ENSG00000169641.14	ENST00000302291.8:ENST00000314174.5:ENST00000471849.5	protein_coding	protein_coding	protein_coding	protein_coding	2	48	2	2.49941	3.512705	4.526	0.00811651	0.00699701	0.0766625	0.0754576
chr7	107103971	107104071	3377761	0	+	0.4	(0.378,0.408]	chr7	316252	117	INTRON	INTRON	PRKAR2B	ENSG00000005249.13	ENST00000265717.5:ENST00000393613.6:ENST00000488792.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	134	2	3.14385	3.51269	3.88153	2.49905e-4	2.75639e-5	0.0146029	0.00414819
chr5	54295611	54295711	2620769	0	-	0.27	[0,0.28]	chr5	248862	94	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2:ENST00000505630.5:ENST00000505383.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	53	2	2.20073	3.51253	4.82433	0.0235708	0.0200334	0.128907	0.109608
chr8	73952867	73952966	3972404	0	-	0.323232	(0.32,0.35]	chr8	364268	57	INTRON	INTRON	ELOC	ENSG00000154582.18	ENST00000602840.5:ENST00000518127.5:ENST00000520242.6:ENST00000687224.1:ENST00000622804.2:ENST00000688584.1:ENST00000692141.1:ENST00000685938.1:ENST00000520210.1:ENST00000284811.12:ENST00000519487.6:ENST00000685250.1:ENST00000522337.5:ENST00000523815.5:ENST00000519082.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	37	2	3.07975	3.5125200000000003	3.94529	0.0693433	0.00554235	0.184298	0.0674105
chrX	114000374	114000474	7868044	0	-	0.47	(0.44,0.476]	chrX	801551	85	INTRON	INTRON	XACT	ENSG00000241743.4	ENST00000468762.3:ENST00000649506.1	lncRNA	lncRNA	lncRNA	lncRNA	1	36	2	2.9195	3.5124500000000003	4.1054	0.0220205	0.0102021	0.123836	0.0850389
chr17	1860260	1860359	6546287	0	+	0.585859	(0.57,1]	chr17	634953	61	INTRON	INTRON	RPA1	ENSG00000132383.12	ENST00000571058.5:ENST00000570451.5:ENST00000254719.10	protein_coding	protein_coding	protein_coding	protein_coding	2	28	2	2.05026	3.5124199999999997	4.97458	0.0321326	2.67728e-4	0.145026	0.0149989
chr18	36163084	36163183	6891779	0	+	0.363636	(0.35,0.378]	chr18	683062	17	INTRON	INTRON	ELP2	ENSG00000134759.14	ENST00000351393.10:ENST00000442325.6:ENST00000358232.11:ENST00000423854.6:ENST00000539560.5:ENST00000350494.10:ENST00000542824.5:ENST00000540799.1:ENST00000542050.5:ENST00000543861.5:ENST00000540766.5:ENST00000541294.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	48	2	1.93432	3.5124199999999997	5.09052	0.0481438	0.00123501	0.153019	0.0326215
chr8	52650638	52650738	3950452	0	-	0.37	(0.35,0.378]	chr8	362312	44	INTRON	INTRON	RB1CC1	ENSG00000023287.13	ENST00000025008.10:ENST00000435644.6:ENST00000521611.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	48	2	1.93432	3.5124199999999997	5.09052	0.0481438	0.00123501	0.153019	0.0326215
chr7	157194030	157194130	3454503	0	+	0.3	(0.28,0.32]	chr7	322959	13	INTRON	INTRON	UBE3C	ENSG00000009335.18	ENST00000348165.10	protein_coding	protein_coding	protein_coding	protein_coding	2	49	2	2.28998	3.51236	4.73474	0.0166401	0.0162835	0.110511	0.101453
chr10	45530709	45530809	4606521	0	-	0.37	(0.35,0.378]	chr10	424345	409	INTRON	INTRON	MARCHF8	ENSG00000165406.16	ENST00000453424.7:ENST00000319836.7:ENST00000395769.6:ENST00000602712.2:ENST00000453980.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	37	2	2.72497	3.51229	4.29961	0.0198266	0.0158483	0.109608	0.109464
chr10	73613844	73613944	4651362	0	-	0.36	(0.35,0.378]	chr10	428094	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	USP54	ENSG00000166348.20	ENST00000339859.8:ENST00000689425.1:ENST00000685297.1:ENST00000422491.7:ENST00000433394.1:ENST00000474929.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	37	2	2.72497	3.51229	4.29961	0.0198266	0.0158483	0.109608	0.109464
chr6	131646927	131647027	2960280	0	+	0.37	(0.35,0.378]	chr6	278276	50	INTRON	INTRON	ENPP3	ENSG00000154269.15	ENST00000427707.5:ENST00000414305.5:ENST00000357639.8:ENST00000358229.6:ENST00000423831.5:ENST00000470930.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	37	2	2.72497	3.51229	4.29961	0.0198266	0.0158483	0.109608	0.109464
chr1	51401549	51401645	453158	0	-	0.322917	(0.32,0.35]	chr1	54335	2	INTRON	INTRON	EPS15	ENSG00000085832.17	ENST00000371733.8:ENST00000371730.6:ENST00000486505.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	198	2	3.35778	3.51226	3.66674	6.77542e-5	9.8302e-6	0.00726476	0.00227957
chr22	20059781	20059880	7478140	0	+	0.30303	(0.28,0.32]	chr22	762668	34	INTRON	INTRON	TANGO2	ENSG00000183597.16	ENST00000401886.5:ENST00000420290.6:ENST00000432883.5:ENST00000434570.6:ENST00000447208.6:ENST00000456048.5:ENST00000411907.5:ENST00000398042.6:ENST00000399807.7:ENST00000450664.5:ENST00000450019.5:ENST00000327374.9:ENST00000430807.5:ENST00000401833.5:ENST00000434168.5:ENST00000444651.5:ENST00000462579.5:ENST00000485715.2:ENST00000490583.5:ENST00000490121.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	291	2	3.12405	3.5122549999999997	3.90046	6.29771e-5	1.49873e-6	0.0070552	7.32159e-4
chr5	88873446	88873545	2671351	0	-	0.343434	(0.32,0.35]	chr5	252833	335	INTRON	INTRON	MEF2C	ENSG00000081189.16	ENST00000504921.7:ENST00000424173.6:ENST00000340208.9:ENST00000636998.1:ENST00000637481.1:ENST00000625674.2:ENST00000437473.6:ENST00000510942.5:ENST00000506554.5:ENST00000637732.1:ENST00000514015.5:ENST00000629612.2:ENST00000636294.1:ENST00000627659.2:ENST00000508569.5:ENST00000513252.5:ENST00000502983.5:ENST00000508610.5:ENST00000503075.1:ENST00000511086.1:ENST00000515093.1:ENST00000509349.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	56	2	2.06478	3.512245	4.95971	0.0147778	0.00663522	0.106702	0.0703181
chr7	10744196	10744296	3484222	0	-	0.33	(0.32,0.35]	chr7	325772	1823	INTRON	INTRON	MGC4859	ENSG00000283117.1	ENST00000634803.1	lncRNA	lncRNA	lncRNA	lncRNA	3	56	2	2.06478	3.512245	4.95971	0.0147778	0.00663522	0.106702	0.0703181
chr3	37078287	37078386	1655633	0	-	0.282828	(0.28,0.32]	chr3	169908	28	INTRON	INTRON	LRRFIP2	ENSG00000093167.18	ENST00000336686.9:ENST00000354379.8:ENST00000421276.6:ENST00000396428.6:ENST00000440230.5:ENST00000440742.2:ENST00000416425.5	protein_coding	protein_coding	protein_coding	protein_coding	4	67	2	1.72287	3.5122	5.30153	0.0286502	0.00332518	0.139456	0.0512081
chr1	225860144	225860240	645985	0	-	0.5625	(0.515,0.57]	chr1	76470	6	EXON_LNCRNA	EXON_LNCRNA:INTRON	TMEM63A	ENSG00000196187.12	ENST00000366835.8:ENST00000474478.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	95	2	2.92506	3.5120750000000003	4.09909	2.50659e-4	4.72555e-5	0.0140705	0.00593159
chr12	94402973	94403071	5389538	0	-	0.469388	(0.44,0.476]	chr12	513857	3	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	CEP83	ENSG00000173588.16	ENST00000397809.10:ENST00000339839.9:ENST00000547232.5:ENST00000547575.5:ENST00000549352.1:ENST00000551078.1:ENST00000551596.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	45	2	2.02558	3.5117000000000003	4.99782	0.0363567	0.0013223	0.138959	0.0333932
chr10	24720342	24720441	4581913	0	-	0.373737	(0.35,0.378]	chr10	422204	56	INTRON	INTRON	ARHGAP21	ENSG00000107863.20	ENST00000612832.4:ENST00000396432.7:ENST00000376410.7:ENST00000446003.5:ENST00000476499.1:ENST00000416305.1:ENST00000472150.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	33	2	2.72498	3.511685	4.29839	0.0294717	0.0168499	0.128055	0.11068
chr16	67770053	67770152	6505316	0	-	0.363636	(0.35,0.378]	chr16	629647	7	INTRON	INTRON	RANBP10	ENSG00000141084.12	ENST00000317506.8:ENST00000448631.6:ENST00000602506.5:ENST00000602677.5:ENST00000602525.5:ENST00000602638.5:ENST00000602815.5:ENST00000602887.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	33	2	2.72498	3.511685	4.29839	0.0294717	0.0168499	0.128055	0.11068
chr2	171553422	171553500	917641	0	+	0.371795	(0.35,0.378]	chr2	101051	2	CDS	CDS:EXON_MRNA	CYBRD1	ENSG00000071967.12	ENST00000409484.5:ENST00000321348.9:ENST00000375252.3:ENST00000445146.1	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	2.72498	3.511685	4.29839	0.0294717	0.0168499	0.128055	0.11068
chr7	152253515	152253615	3679453	0	-	0.36	(0.35,0.378]	chr7	341597	4	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682916.1:ENST00000682280.1:ENST00000680039.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	33	2	2.72498	3.511685	4.29839	0.0294717	0.0168499	0.128055	0.11068
chr8	30721625	30721724	3932686	0	-	0.353535	(0.35,0.378]	chr8	360269	92	INTRON	INTRON	GSR	ENSG00000104687.14	ENST00000221130.11:ENST00000643653.1:ENST00000643525.1:ENST00000537535.5:ENST00000541648.5:ENST00000546342.5:ENST00000523295.5:ENST00000521479.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	33	2	2.72498	3.511685	4.29839	0.0294717	0.0168499	0.128055	0.11068
chr9	114503799	114503893	4321952	0	-	0.37234	(0.35,0.378]	chr9	397767	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	WHRN	ENSG00000095397.16	ENST00000362057.4:ENST00000673811.1:ENST00000374057.3:ENST00000480518.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	33	2	2.72498	3.511685	4.29839	0.0294717	0.0168499	0.128055	0.11068
chrX	48914656	48914742	7815653	0	-	0.372093	(0.35,0.378]	chrX	796802	2	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PIM2	ENSG00000102096.9	ENST00000376509.4:ENST00000485431.1:ENST00000442430.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	33	2	2.72498	3.511685	4.29839	0.0294717	0.0168499	0.128055	0.11068
chr11	64777398	64777498	4965298	0	-	0.35	(0.32,0.35]	chr11	467547	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	SF1	ENSG00000168066.21	ENST00000334944.9:ENST00000227503.13:ENST00000377394.7:ENST00000448404.5:ENST00000377390.8:ENST00000377387.5:ENST00000681407.1:ENST00000433274.6:ENST00000633899.1:ENST00000413951.5:ENST00000432725.1:ENST00000482693.1:ENST00000463343.1:ENST00000472725.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	82	2	3.3273	3.5115600000000002	3.69582	0.00218894	7.3931e-4	0.0435144	0.0249744
chr4	139306180	139306280	2049738	0	+	0.28	[0,0.28]	chr4	203286	36	INTRON	INTRON	NAA15	ENSG00000164134.13	ENST00000296543.10:ENST00000398947.1:ENST00000482087.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	43	2	2.38757	3.5114	4.63523	0.0552962	0.0139836	0.165463	0.10247
chr9	96411350	96411449	4295302	0	-	0.515152	(0.476,0.515]	chr9	394970	127	INTRON	INTRON	ZNF367	ENSG00000165244.7	ENST00000375256.5	protein_coding	protein_coding	protein_coding	protein_coding	4	111	2	2.82251	3.5113199999999996	4.20013	6.78359e-4	2.43832e-5	0.023827	0.00386122
chr14	49840126	49840217	5887133	0	-	0.527473	(0.515,0.57]	chr14	558785	8	INTRON	INTRON	NEMF	ENSG00000165525.18	ENST00000298310.10:ENST00000555970.5:ENST00000557380.5:ENST00000554626.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	38	2	2.26012	3.51128	4.76244	0.0160033	0.00362147	0.109464	0.0533855
chr22	21587163	21587263	7481899	0	+	0.55	(0.515,0.57]	chr22	763232	184	INTRON	INTRON	UBE2L3	ENSG00000185651.16	ENST00000458578.6:ENST00000545681.2:ENST00000696046.1:ENST00000342192.9:ENST00000496722.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	38	2	2.26012	3.51128	4.76244	0.0160033	0.00362147	0.109464	0.0533855
chr6	47517122	47517222	2873959	0	+	0.53	(0.515,0.57]	chr6	272731	133	INTRON	INTRON	CD2AP	ENSG00000198087.7	ENST00000359314.5	protein_coding	protein_coding	protein_coding	protein_coding	2	38	2	2.26012	3.51128	4.76244	0.0160033	0.00362147	0.109464	0.0533855
chr2	169597991	169598090	906607	0	+	0.50505	(0.476,0.515]	chr2	100021	49	INTRON	INTRON	PPIG	ENSG00000138398.17	ENST00000678088.1:ENST00000677392.1:ENST00000433207.6:ENST00000679324.1:ENST00000414307.6:ENST00000676508.1:ENST00000260970.8:ENST00000678695.1:ENST00000409714.7:ENST00000530152.5:ENST00000677750.1:ENST00000676557.1:ENST00000678721.1:ENST00000462903.6:ENST00000676756.1:ENST00000679107.1:ENST00000678499.1:ENST00000678638.1:ENST00000448752.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	139	2	2.64043	3.51124	4.38205	2.41299e-4	1.51595e-5	0.0136685	0.00311809
chr16	69605518	69605618	6380405	0	+	0.33	(0.32,0.35]	chr16	613167	366	INTRON	INTRON	NFAT5	ENSG00000102908.22	ENST00000426654.6:ENST00000349945.7:ENST00000354436.6:ENST00000627621.3:ENST00000650987.1:ENST00000567990.5:ENST00000567239.5:ENST00000393742.7:ENST00000565301.2:ENST00000566899.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	34	2	2.56618	3.511235	4.45629	0.0274185	0.0246089	0.136498	0.12011
chr4	75670527	75670627	2162084	0	-	0.34	(0.32,0.35]	chr4	213029	1	SS3_PROX	SS3_PROX:INTRON	G3BP2	ENSG00000138757.15	ENST00000676666.1:ENST00000678062.1:ENST00000678100.1:ENST00000678122.1:ENST00000677265.1:ENST00000678971.1:ENST00000679281.1:ENST00000677333.1:ENST00000676470.1:ENST00000677620.1:ENST00000677606.1:ENST00000678798.1:ENST00000677583.1:ENST00000678447.1:ENST00000678875.1:ENST00000678244.1:ENST00000676974.1:ENST00000677003.1:ENST00000677889.1:ENST00000678329.1:ENST00000676584.1:ENST00000678552.1:ENST00000677192.1:ENST00000677727.1:ENST00000678265.1:ENST00000676839.1:ENST00000677876.1:ENST00000678123.1:ENST00000678578.1:ENST00000677171.1:ENST00000395719.7:ENST00000359707.9:ENST00000677060.1:ENST00000679294.1:ENST00000677201.1:ENST00000677952.1:ENST00000677125.1:ENST00000678273.1:ENST00000357854.7:ENST00000677162.1:ENST00000677566.1:ENST00000677970.1:ENST00000503660.5:ENST00000678670.1:ENST00000502654.5:ENST00000507745.5:ENST00000513927.1:ENST00000511146.5:ENST00000507252.5:ENST00000507701.1:ENST00000499709.3:ENST00000511868.6:ENST00000508510.6:ENST00000676702.1:ENST00000677145.1:ENST00000509561.6:ENST00000677489.1:ENST00000678389.1:ENST00000676485.1:ENST00000678908.1:ENST00000678843.1:ENST00000676641.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	34	2	2.56618	3.511235	4.45629	0.0274185	0.0246089	0.136498	0.12011
chr4	118692168	118692268	2025245	0	+	0.33	(0.32,0.35]	chr4	201389	1	SS5_PROX	SS5_PROX:INTRON	METTL14	ENSG00000145388.15	ENST00000388822.10:ENST00000626212.2:ENST00000628452.2:ENST00000502564.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	34	2	2.56618	3.511235	4.45629	0.0274185	0.0246089	0.136498	0.12011
chr6	20484408	20484507	2828278	0	+	0.333333	(0.32,0.35]	chr6	265601	11	INTRON	INTRON	E2F3	ENSG00000112242.16	ENST00000346618.8:ENST00000535432.2	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	2.56618	3.511235	4.45629	0.0274185	0.0246089	0.136498	0.12011
chr6	20653374	20653474	2829575	0	+	0.33	(0.32,0.35]	chr6	265655	36	INTRON	INTRON	CDKAL1	ENSG00000145996.11	ENST00000274695.8:ENST00000378610.1	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	2.56618	3.511235	4.45629	0.0274185	0.0246089	0.136498	0.12011
chr8	100928733	100928832	4005735	0	-	0.343434	(0.32,0.35]	chr8	366658	33	INTRON	INTRON	YWHAZ	ENSG00000164924.18	ENST00000395958.6:ENST00000395957.6:ENST00000457309.2:ENST00000395956.7:ENST00000353245.7:ENST00000521309.5:ENST00000522542.5:ENST00000522819.5:ENST00000395953.6:ENST00000395948.6:ENST00000395951.7:ENST00000419477.6:ENST00000521607.5:ENST00000480304.5:ENST00000518736.5:ENST00000517727.5:ENST00000521328.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	34	2	2.56618	3.511235	4.45629	0.0274185	0.0246089	0.136498	0.12011
chr22	21839832	21839932	7561108	0	-	0.38	(0.378,0.408]	chr22	773388	316	INTRON	INTRON	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	3	56	2	1.58349	3.5112050000000004	5.43892	0.0653091	2.28412e-4	0.180158	0.0133228
chr21	39213953	39214053	7464512	0	-	0.3	(0.28,0.32]	chr21	760408	4	SS3_PROX	SS3_PROX:INTRON	BRWD1	ENSG00000185658.14	ENST00000333229.6:ENST00000342449.8:ENST00000446924.5:ENST00000380800.7:ENST00000424441.1:ENST00000473813.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	55	2	2.77917	3.5111850000000002	4.2432	0.0479043	0.00285651	0.153019	0.0494641
chr17	66421711	66421811	6663489	0	+	0.51	(0.476,0.515]	chr17	650326	575	INTRON	INTRON	PRKCA	ENSG00000154229.12	ENST00000413366.8:ENST00000578063.5:ENST00000284384.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	66	2	2.02889	3.5111550000000005	4.99342	0.00978617	0.00139274	0.0835427	0.0341261
chr2	172573317	172573417	920079	0	+	0.33	(0.32,0.35]	chr2	101374	21	INTRON	INTRON	PDK1	ENSG00000152256.14	ENST00000392571.6:ENST00000410055.5:ENST00000282077.8:ENST00000466437.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	51	2	2.7493	3.5111499999999998	4.273	0.0368357	0.00296357	0.138959	0.0500135
chr4	78810866	78810966	1981730	0	+	0.32	(0.28,0.32]	chr4	198463	338	INTRON	INTRON	BMP2K	ENSG00000138756.19	ENST00000389010.7:ENST00000502613.3:ENST00000502871.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	236	2	2.1186	3.5111399999999997	4.90368	0.00122607	2.82237e-6	0.0325342	0.00119159
chr16	339154	339254	6426721	0	-	0.44	(0.408,0.44]	chr16	617500	241	INTRON	INTRON	AXIN1	ENSG00000103126.15	ENST00000262320.8:ENST00000461023.5:ENST00000354866.7:ENST00000481769.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	34	2	2.58624	3.5110200000000003	4.4358	0.0273686	0.00893097	0.123904	0.0849778
chr2	32392748	32392846	731138	0	+	0.438776	(0.408,0.44]	chr2	84298	2	INTRON	INTRON	BIRC6	ENSG00000115760.15	ENST00000421745.7:ENST00000648282.1:ENST00000466527.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	34	2	2.58624	3.5110200000000003	4.4358	0.0273686	0.00893097	0.123904	0.0849778
chr14	77116198	77116297	5799223	0	+	0.373737	(0.35,0.378]	chr14	549331	20	UTR3	UTR3:EXON_MRNA	CIPC	ENSG00000198894.8	ENST00000361786.7	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	2.30249	3.5110099999999997	4.71953	0.0519726	0.0103314	0.176696	0.0850389
chr21	45112238	45112338	7418229	0	+	0.36	(0.35,0.378]	chr21	756262	371	INTRON	INTRON	ADARB1	ENSG00000197381.17	ENST00000462214.5:ENST00000460734.5:ENST00000348831.9:ENST00000389861.7:ENST00000389863.8:ENST00000492414.5:ENST00000496664.5:ENST00000437626.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	33	2	2.30249	3.5110099999999997	4.71953	0.0519726	0.0103314	0.176696	0.0850389
chr5	142318445	142318543	2741177	0	-	0.357143	(0.35,0.378]	chr5	258513	28	INTRON	INTRON	SPRY4	ENSG00000187678.10	ENST00000344120.4:ENST00000434127.3:ENST00000511815.1:ENST00000503582.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	33	2	2.30249	3.5110099999999997	4.71953	0.0519726	0.0103314	0.176696	0.0850389
chr5	179555549	179555649	2559820	0	+	0.36	(0.35,0.378]	chr5	244705	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	RUFY1	ENSG00000176783.15	ENST00000319449.9:ENST00000393448.6:ENST00000502984.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	33	2	2.30249	3.5110099999999997	4.71953	0.0519726	0.0103314	0.176696	0.0850389
chr1	176155571	176155671	591192	0	-	0.33	(0.32,0.35]	chr1	70951	61	INTRON	INTRON	COP1	ENSG00000143207.21	ENST00000367669.8:ENST00000367667.5:ENST00000367666.5:ENST00000649803.1:ENST00000308769.12:ENST00000498306.5:ENST00000491600.5:ENST00000474194.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	34	2	2.40308	3.5109850000000002	4.61889	0.0417732	0.0166646	0.161736	0.102621
chr11	83213854	83213950	4841331	0	+	0.333333	(0.32,0.35]	chr11	451613	9	UTR3	UTR3:EXON_MRNA:INTRON	ANKRD42	ENSG00000137494.14	ENST00000533342.6:ENST00000393389.7:ENST00000260047.10:ENST00000526731.5:ENST00000531895.5:ENST00000393392.6	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	2.40308	3.5109850000000002	4.61889	0.0417732	0.0166646	0.161736	0.102621
chr12	54460771	54460871	5331584	0	-	0.34	(0.32,0.35]	chr12	508879	3	SS3_PROX	SS3_PROX:INTRON	GTSF1	ENSG00000170627.11	ENST00000546931.5:ENST00000552397.5:ENST00000305879.8:ENST00000552395.5:ENST00000546575.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	34	2	2.40308	3.5109850000000002	4.61889	0.0417732	0.0166646	0.161736	0.102621
chr13	28247117	28247216	5461920	0	+	0.333333	(0.32,0.35]	chr13	523271	67	INTRON	INTRON	PAN3	ENSG00000152520.14	ENST00000503791.5:ENST00000380958.8:ENST00000399613.1:ENST00000483842.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	34	2	2.40308	3.5109850000000002	4.61889	0.0417732	0.0166646	0.161736	0.102621
chr15	27112292	27112392	5983566	0	+	0.35	(0.32,0.35]	chr15	569164	851	INTRON	INTRON	GABRG3	ENSG00000182256.13	ENST00000615808.5:ENST00000555083.5	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	2.40308	3.5109850000000002	4.61889	0.0417732	0.0166646	0.161736	0.102621
chr2	128101007	128101106	862568	0	+	0.343434	(0.32,0.35]	chr2	96661	31	INTRON	INTRON	UGGT1	ENSG00000136731.13	ENST00000259253.11:ENST00000430075.5:ENST00000438277.5:ENST00000376723.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	34	2	2.40308	3.5109850000000002	4.61889	0.0417732	0.0166646	0.161736	0.102621
chr22	27946361	27946461	7493054	0	+	0.35	(0.32,0.35]	chr22	764498	58	INTRON	INTRON	TTC28-AS1	ENSG00000235954.8	ENST00000430853.5:ENST00000434221.6:ENST00000417497.6:ENST00000424161.6:ENST00000419253.1:ENST00000454741.5:ENST00000659843.1:ENST00000665376.1:ENST00000453632.6:ENST00000662682.1:ENST00000655332.1:ENST00000454996.7:ENST00000665505.1:ENST00000435348.6:ENST00000664946.1:ENST00000425112.2:ENST00000654553.1:ENST00000669227.1:ENST00000452612.5:ENST00000688200.1:ENST00000662424.1:ENST00000654619.1	lncRNA	lncRNA	lncRNA	lncRNA	1	34	2	2.40308	3.5109850000000002	4.61889	0.0417732	0.0166646	0.161736	0.102621
chr6	57185081	57185180	2879016	0	+	0.333333	(0.32,0.35]	chr6	273346	10	UTR3	UTR3:EXON_MRNA	BAG2	ENSG00000112208.11	ENST00000370693.5	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	2.40308	3.5109850000000002	4.61889	0.0417732	0.0166646	0.161736	0.102621
chr7	102193990	102194090	3370147	0	+	0.35	(0.32,0.35]	chr7	315303	1	SS5_PROX	SS5_PROX:INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000560541.5:ENST00000558836.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	34	2	2.40308	3.5109850000000002	4.61889	0.0417732	0.0166646	0.161736	0.102621
chr9	77336754	77336854	4146566	0	+	0.35	(0.32,0.35]	chr9	377995	1	SS3_PROX	SS3_PROX:INTRON	VPS13A	ENSG00000197969.14	ENST00000376636.7:ENST00000360280.8:ENST00000643348.1:ENST00000645632.1:ENST00000419472.1	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	2.40308	3.5109850000000002	4.61889	0.0417732	0.0166646	0.161736	0.102621
chr9	130734854	130734954	4214073	0	+	0.22	[0,0.28]	chr9	386427	200	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000393293.4	protein_coding	protein_coding	protein_coding	protein_coding	2	99	2	3.44611	3.510985	3.57586	0.00187793	0.00185186	0.039946	0.039073
chr12	108727945	108728045	5406750	0	-	0.37	(0.35,0.378]	chr12	516035	250	INTRON	INTRON	CORO1C	ENSG00000110880.11	ENST00000261401.8:ENST00000541050.5:ENST00000549384.5:ENST00000550542.5:ENST00000552871.5:ENST00000551550.5:ENST00000546571.5:ENST00000551044.1:ENST00000551059.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	53	2	1.97646	3.51079	5.04512	0.0193942	0.00393262	0.119831	0.0548259
chr18	12973258	12973357	6876414	0	+	0.353535	(0.35,0.378]	chr18	681301	18	EXON_LNCRNA	EXON_LNCRNA:INTRON	SEH1L	ENSG00000085415.16	ENST00000262124.15:ENST00000399892.7:ENST00000587761.1:ENST00000592582.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	53	2	1.97646	3.51079	5.04512	0.0193942	0.00393262	0.119831	0.0548259
chr3	149054703	149054802	1840671	0	-	0.373737	(0.35,0.378]	chr3	185131	22	INTRON	INTRON	HLTF	ENSG00000071794.16	ENST00000310053.10:ENST00000465259.5:ENST00000392912.6:ENST00000494055.5:ENST00000493881.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	53	2	1.97646	3.51079	5.04512	0.0193942	0.00393262	0.119831	0.0548259
chr19	53100964	53101064	7210547	0	-	0.49	(0.476,0.515]	chr19	731901	48	INTRON	INTRON	ZNF160	ENSG00000170949.18	ENST00000599056.5:ENST00000418871.5:ENST00000429604.5:ENST00000683776.1:ENST00000599247.5:ENST00000355147.9:ENST00000597112.5:ENST00000602095.5:ENST00000596966.5:ENST00000594760.1:ENST00000600924.1:ENST00000599980.1:ENST00000596388.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	33	2	2.3223	3.51074	4.69918	0.0519312	0.00400966	0.159306	0.057767
chr20	32832817	32832917	7257296	0	+	0.49	(0.476,0.515]	chr20	737257	64	INTRON	INTRON	MAPRE1	ENSG00000101367.9	ENST00000375571.6	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	2.3223	3.51074	4.69918	0.0519312	0.00400966	0.159306	0.057767
chr7	67257254	67257354	3541405	0	-	0.5	(0.476,0.515]	chr7	330356	16	INTRON	INTRON	PMS2P4	ENSG00000067601.9	ENST00000685171.1:ENST00000688358.1:ENST00000692496.1:ENST00000685583.1:ENST00000688710.1:ENST00000684859.1:ENST00000685318.1:ENST00000691713.1:ENST00000686389.1:ENST00000690253.1:ENST00000688815.1:ENST00000692171.1:ENST00000692360.1:ENST00000689281.1:ENST00000690241.1:ENST00000689629.1:ENST00000689043.1:ENST00000688809.1:ENST00000687432.1:ENST00000687680.1:ENST00000686900.1:ENST00000691782.1:ENST00000693356.1:ENST00000691384.1:ENST00000690440.1:ENST00000686719.1:ENST00000686561.1:ENST00000688238.1:ENST00000687826.1:ENST00000689908.1:ENST00000689385.1:ENST00000689855.1:ENST00000691806.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	1	33	2	2.3223	3.51074	4.69918	0.0519312	0.00400966	0.159306	0.057767
chr1	2239139	2239238	2274	0	+	0.313131	(0.28,0.32]	chr1	553	61	INTRON	INTRON	SKI	ENSG00000157933.10	ENST00000378536.5:ENST00000508416.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	39	2	2.18975	3.5107	4.83165	0.0776042	0.00527257	0.196285	0.0656295
chr3	14161624	14161723	1618996	0	-	0.30303	(0.28,0.32]	chr3	167323	14	INTRON	INTRON	XPC	ENSG00000154767.15	ENST00000285021.12:ENST00000476581.6:ENST00000477324.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	39	2	2.18975	3.5107	4.83165	0.0776042	0.00527257	0.196285	0.0656295
chr14	37061888	37061988	5876906	0	-	0.51	(0.476,0.515]	chr14	558013	1865	INTRON	INTRON	SLC25A21	ENSG00000183032.12	ENST00000331299.6:ENST00000555449.5:ENST00000557611.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	33	2	2.40608	3.510635	4.61519	0.0425709	0.00528365	0.148082	0.0656295
chr2	98450883	98450983	832939	0	+	0.49	(0.476,0.515]	chr2	93413	54	INTRON	INTRON	INPP4A	ENSG00000040933.16	ENST00000409016.8:ENST00000409851.8:ENST00000074304.9:ENST00000409463.5:ENST00000409540.7	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	2.40608	3.510635	4.61519	0.0425709	0.00528365	0.148082	0.0656295
chrX	139920023	139920123	7905775	0	-	0.5	(0.476,0.515]	chrX	804457	879	INTRON	INTRON	ATP11C	ENSG00000101974.15	ENST00000370557.5:ENST00000682941.1:ENST00000485626.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	33	2	2.40608	3.510635	4.61519	0.0425709	0.00528365	0.148082	0.0656295
chr10	22712635	22712735	4580485	0	-	0.37	(0.35,0.378]	chr10	422046	181	INTRON	INTRON	PIP4K2A	ENSG00000150867.14	ENST00000376573.9:ENST00000545335.5	protein_coding	protein_coding	protein_coding	protein_coding	2	44	2	2.23043	3.5106100000000002	4.79079	0.0187487	0.00846427	0.117523	0.0776969
chr15	28258438	28258534	6123410	0	-	0.3125	(0.28,0.32]	chr15	583323	8	INTRON	INTRON	HERC2	ENSG00000128731.18	ENST00000261609.13:ENST00000564734.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	39	2	2.2609	3.510605	4.76031	0.0671429	0.00656106	0.183051	0.0735539
chr2	147968446	147968546	1242248	0	-	0.31	(0.28,0.32]	chr2	131858	92	INTRON	INTRON	ORC4	ENSG00000115947.14	ENST00000392857.10:ENST00000264169.6:ENST00000536575.5:ENST00000535373.5:ENST00000540442.5:ENST00000461711.5:ENST00000496670.6:ENST00000490200.5:ENST00000416719.5:ENST00000457954.5:ENST00000440042.1:ENST00000495601.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	39	2	2.2609	3.510605	4.76031	0.0671429	0.00656106	0.183051	0.0735539
chr2	208694279	208694379	996340	0	+	0.3	(0.28,0.32]	chr2	106920	369	INTRON	INTRON	PTH2R	ENSG00000144407.10	ENST00000419079.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	1	39	2	2.2609	3.510605	4.76031	0.0671429	0.00656106	0.183051	0.0735539
chr7	128333662	128333762	3635154	0	-	0.36	(0.35,0.378]	chr7	337882	3	SS3_PROX	SS3_PROX:INTRON	RBM28	ENSG00000106344.8	ENST00000223073.6:ENST00000415472.6:ENST00000487602.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	75	2	3.47933	3.510595	3.54186	0.0015613	8.14353e-4	0.0360352	0.02604
chr2	96359547	96359642	830452	0	+	0.368421	(0.35,0.378]	chr2	92848	2	SS5_PROX	SS5_PROX:INTRON	NCAPH	ENSG00000121152.10	ENST00000240423.9:ENST00000427946.5:ENST00000435975.5:ENST00000455200.5	protein_coding	protein_coding	protein_coding	protein_coding	3	53	2	1.71046	3.51052	5.31058	0.0441269	0.00160599	0.162255	0.0364977
chr1	229339004	229339103	652574	0	-	0.252525	[0,0.28]	chr1	77248	111	INTRON	INTRON	CCSAP	ENSG00000154429.11	ENST00000366687.5:ENST00000284617.7:ENST00000366686.1:ENST00000483092.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	84	2	1.76263	3.5103899999999997	5.25815	0.0191804	0.0066548	0.119774	0.0703807
chr9	111365650	111365748	4314054	0	-	0.255102	[0,0.28]	chr9	396592	2	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	ECPAS	ENSG00000136813.15	ENST00000684092.1:ENST00000338205.9:ENST00000259335.8:ENST00000374383.1:ENST00000465499.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	98	2	3.18358	3.510365	3.83715	0.00694532	3.63888e-4	0.0718189	0.0170637
chr2	113735776	113735858	1216612	0	-	0.329268	(0.32,0.35]	chr2	129509	1	CDS	CDS:EXON_MRNA	SLC35F5	ENSG00000115084.15	ENST00000245680.7:ENST00000409106.5:ENST00000447673.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	57	2	2.18777	3.51032	4.83287	0.00951422	0.0095071	0.0863913	0.0817766
chr9	136421132	136421231	4221402	0	+	0.575758	(0.57,1]	chr9	387555	3	INTRON	INTRON	PMPCA	ENSG00000165688.12	ENST00000371717.8:ENST00000399219.7:ENST00000444897.2	protein_coding	protein_coding	protein_coding	protein_coding	4	66	2	3.45511	3.5102849999999997	3.56546	4.32887e-5	2.14398e-5	0.00532052	0.00377331
chr11	2991793	2991870	4891997	0	-	0.727273	(0.57,1]	chr11	458385	1	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	NAP1L4	ENSG00000205531.13	ENST00000620138.4:ENST00000380542.9:ENST00000526115.5:ENST00000532325.6:ENST00000448187.5:ENST00000399614.6:ENST00000430811.5:ENST00000529361.5:ENST00000528968.5:ENST00000526842.5:ENST00000531291.5:ENST00000534372.1	protein_coding	protein_coding	protein_coding	protein_coding	5	68	2	2.8182	3.510155	4.20211	1.17872e-4	9.40529e-6	0.00930884	0.00236268
chr21	39255344	39255444	7464943	0	-	0.52	(0.515,0.57]	chr21	760484	3	SS5_PROX	SS5_PROX:INTRON	BRWD1	ENSG00000185658.14	ENST00000333229.6:ENST00000342449.8:ENST00000446924.5:ENST00000380800.7:ENST00000430093.5:ENST00000445245.5:ENST00000445668.5:ENST00000412604.1:ENST00000455867.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	209	2	3.14094	3.509805	3.87867	3.12845e-6	8.02129e-7	0.00114282	5.46801e-4
chr15	22562239	22562336	5975215	0	+	0.329897	(0.32,0.35]	chr15	568181	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HERC2P2	ENSG00000276550.5	ENST00000613386.4:ENST00000619021.4:ENST00000615156.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	5	173	2	3.03596	3.5097050000000003	3.98345	3.61632e-4	4.64014e-6	0.0176126	0.00144728
chr15	81838560	81838660	6243689	0	-	0.3	(0.28,0.32]	chr15	595867	198	INTRON	INTRON	ENSG00000259692	ENSG00000259692.6	ENST00000559428.2:ENST00000560054.6:ENST00000560097.1:ENST00000559299.2	lncRNA	lncRNA	lncRNA	lncRNA	2	54	2	2.05458	3.5095600000000005	4.96454	0.0381508	0.00344078	0.141764	0.0539802
chr2	23830819	23830918	1079973	0	-	0.30303	(0.28,0.32]	chr2	115282	15	INTRON	INTRON	ATAD2B	ENSG00000119778.15	ENST00000238789.10:ENST00000474583.5:ENST00000458510.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	54	2	2.05458	3.5095600000000005	4.96454	0.0381508	0.00344078	0.141764	0.0539802
chr1	154336749	154336847	228243	0	+	0.459184	(0.44,0.476]	chr1	26468	18	INTRON	INTRON	ATP8B2	ENSG00000143515.20	ENST00000368489.6:ENST00000368487.7:ENST00000672630.1:ENST00000426445.1:ENST00000696573.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	32	2	2.89047	3.50945	4.12843	0.0337192	0.00955699	0.134145	0.0863913
chr12	118416633	118416733	5234813	0	+	0.46	(0.44,0.476]	chr12	496670	23	UTR3	UTR3:EXON_MRNA	SUDS3	ENSG00000111707.12	ENST00000543473.2	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	2.89047	3.50945	4.12843	0.0337192	0.00955699	0.134145	0.0863913
chr20	31767674	31767773	7253948	0	+	0.464646	(0.44,0.476]	chr20	736751	6	INTRON	INTRON	TPX2	ENSG00000088325.16	ENST00000340513.4:ENST00000300403.11	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	2.89047	3.50945	4.12843	0.0337192	0.00955699	0.134145	0.0863913
chr7	100021829	100021928	3363153	0	+	0.454545	(0.44,0.476]	chr7	314220	21	INTRON	INTRON	ZKSCAN1	ENSG00000106261.17	ENST00000535170.5:ENST00000324306.11:ENST00000426572.5:ENST00000482979.5:ENST00000432317.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	32	2	2.89047	3.50945	4.12843	0.0337192	0.00955699	0.134145	0.0863913
chr1	179889569	179889669	267116	0	+	0.23	[0,0.28]	chr1	31239	2	SS5_PROX	SS5_PROX:INTRON	TOR1AIP1	ENSG00000143337.19	ENST00000528443.6:ENST00000606911.7:ENST00000271583.7:ENST00000435319.8:ENST00000531630.6:ENST00000527391.5:ENST00000529091.5:ENST00000527867.5:ENST00000474875.5:ENST00000531726.5:ENST00000524653.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	44	2	2.54624	3.5093900000000002	4.47254	0.0388449	0.020991	0.143072	0.122348
chr10	118693001	118693101	4703791	0	-	0.4	(0.378,0.408]	chr10	433857	12	INTRON	INTRON	CACUL1	ENSG00000151893.15	ENST00000544392.5:ENST00000369151.8:ENST00000493518.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	43	2	2.35527	3.509325	4.66338	0.0121511	0.0103469	0.0963966	0.0850389
chr4	78834187	78834286	1981967	0	+	0.212121	[0,0.28]	chr4	198479	1	INTRON	INTRON	BMP2K	ENSG00000138756.19	ENST00000389010.7:ENST00000502613.3:ENST00000502871.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	59	2	1.98291	3.509295	5.03568	0.0494143	0.00446141	0.156195	0.0610799
chr1	50611343	50611443	448758	0	-	0.35	(0.32,0.35]	chr1	54223	45	INTRON	INTRON	FAF1	ENSG00000185104.21	ENST00000396153.7:ENST00000494400.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	37	2	2.37794	3.5092	4.64046	0.0498601	0.00724767	0.156383	0.0756327
chr10	37853796	37853896	4602561	0	-	0.33	(0.32,0.35]	chr10	423985	153	INTRON	INTRON	ZNF248	ENSG00000198105.16	ENST00000615949.6:ENST00000485560.5:ENST00000395867.8:ENST00000357328.8:ENST00000611278.4:ENST00000374648.7:ENST00000395873.7:ENST00000395874.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	37	2	2.37794	3.5092	4.64046	0.0498601	0.00724767	0.156383	0.0756327
chr16	47338405	47338505	6482468	0	-	0.35	(0.32,0.35]	chr16	626999	242	INTRON	INTRON	ITFG1	ENSG00000129636.13	ENST00000320640.11:ENST00000542691.5:ENST00000544001.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	37	2	2.37794	3.5092	4.64046	0.0498601	0.00724767	0.156383	0.0756327
chr2	237981591	237981690	1050690	0	+	0.343434	(0.32,0.35]	chr2	111719	75	INTRON	INTRON	UBE2F	ENSG00000184182.19	ENST00000440223.5:ENST00000441728.6:ENST00000414443.5:ENST00000272930.9:ENST00000409633.5:ENST00000416292.5:ENST00000448502.5:ENST00000433568.5:ENST00000455999.5:ENST00000417231.5:ENST00000445676.5:ENST00000439338.5:ENST00000439780.5:ENST00000454786.5:ENST00000433241.5:ENST00000409953.5:ENST00000409332.5:ENST00000612130.4:ENST00000434655.5:ENST00000434137.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	37	2	2.37794	3.5092	4.64046	0.0498601	0.00724767	0.156383	0.0756327
chr2	239984516	239984616	1345307	0	-	0.35	(0.32,0.35]	chr2	141052	4	INTRON	INTRON	NDUFA10	ENSG00000130414.13	ENST00000419408.5:ENST00000679183.1:ENST00000677057.1:ENST00000676782.1:ENST00000677407.1:ENST00000676929.1:ENST00000678455.1:ENST00000252711.7:ENST00000677692.1:ENST00000476216.6:ENST00000677395.1:ENST00000678188.1:ENST00000677979.1:ENST00000678914.1:ENST00000678562.1:ENST00000678832.1:ENST00000677155.1:ENST00000677764.1:ENST00000677294.1:ENST00000678468.1:ENST00000677324.1:ENST00000678158.1:ENST00000676491.1:ENST00000677114.1:ENST00000404554.5:ENST00000620965.5:ENST00000485344.6:ENST00000679308.1:ENST00000677567.1:ENST00000679158.1:ENST00000443626.5:ENST00000444548.6:ENST00000448880.6:ENST00000677490.1:ENST00000307300.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	37	2	2.37794	3.5092	4.64046	0.0498601	0.00724767	0.156383	0.0756327
chr7	131345170	131345270	3416615	0	+	0.35	(0.32,0.35]	chr7	319187	168	INTRON	INTRON	MKLN1	ENSG00000128585.18	ENST00000421797.6:ENST00000416992.6:ENST00000429546.5:ENST00000446815.5:ENST00000494286.5:ENST00000352689.11:ENST00000494785.5:ENST00000458153.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	37	2	2.37794	3.5092	4.64046	0.0498601	0.00724767	0.156383	0.0756327
chr17	31237002	31237102	6592599	0	+	0.3	(0.28,0.32]	chr17	641213	4	SS5_PROX	SS5_PROX:INTRON	NF1	ENSG00000196712.20	ENST00000696138.1:ENST00000356175.7:ENST00000691014.1:ENST00000358273.9:ENST00000579081.5:ENST00000495910.6:ENST00000456735.6:ENST00000493220.5:ENST00000696139.1:ENST00000466819.5:ENST00000479614.1:ENST00000687863.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	41	2	2.67975	3.5091900000000003	4.33863	0.0252505	0.0207276	0.122348	0.12011
chr7	74703290	74703388	3335710	0	+	0.295918	(0.28,0.32]	chr7	310373	23	INTRON	INTRON	GTF2I	ENSG00000263001.8	ENST00000650807.1:ENST00000690345.1:ENST00000573035.6:ENST00000614986.4:ENST00000620879.4:ENST00000621734.4:ENST00000443166.5	protein_coding	protein_coding	protein_coding	protein_coding	1	41	2	2.67975	3.5091900000000003	4.33863	0.0252505	0.0207276	0.122348	0.12011
chr7	92248318	92248418	3352815	0	+	0.47	(0.44,0.476]	chr7	312479	14	INTRON	INTRON	ANKIB1	ENSG00000001629.10	ENST00000265742.8	protein_coding	protein_coding	protein_coding	protein_coding	2	42	2	2.33272	3.50918	4.68564	0.0129984	0.00816201	0.0991656	0.0766625
chr7	105520657	105520756	3604848	0	-	0.424242	(0.408,0.44]	chr7	336276	118	INTRON	INTRON	PUS7	ENSG00000091127.14	ENST00000481939.5:ENST00000469408.6:ENST00000356362.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	72	2	3.25948	3.50915	3.75882	0.00246454	4.04678e-4	0.0459102	0.0185763
chr1	84670175	84670269	496569	0	-	0.202128	[0,0.28]	chr1	58878	4	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SSX2IP	ENSG00000117155.17	ENST00000342203.8:ENST00000437941.6:ENST00000481102.5:ENST00000476905.6:ENST00000605755.5:ENST00000603677.1:ENST00000460500.1:ENST00000422026.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	63	2	1.71402	3.50913	5.30424	0.047753	0.00584781	0.170327	0.0667594
chr1	167243397	167243496	245075	0	+	0.212121	[0,0.28]	chr1	29251	14	INTRON	INTRON	POU2F1	ENSG00000143190.23	ENST00000559038.5:ENST00000367866.7:ENST00000557909.5:ENST00000271411.8:ENST00000429375.6:ENST00000560232.6:ENST00000442313.5:ENST00000367865.5:ENST00000492850.5:ENST00000541643.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	63	2	1.71402	3.50913	5.30424	0.047753	0.00584781	0.170327	0.0667594
chr21	37377614	37377714	7406330	0	+	0.44	(0.408,0.44]	chr21	754850	21	INTRON	INTRON	DYRK1A	ENSG00000157540.22	ENST00000646523.1:ENST00000647425.1:ENST00000647188.2:ENST00000647504.1:ENST00000644942.1:ENST00000338785.8:ENST00000643624.1:ENST00000643551.1:ENST00000426672.6:ENST00000398960.7	protein_coding	protein_coding	protein_coding	protein_coding	4	112	2	2.62147	3.50906	4.39665	0.00180223	7.2191e-6	0.0382461	0.00190592
chr14	30977292	30977392	5857382	0	-	0.21	[0,0.28]	chr14	556508	129	INTRON	INTRON	STRN3	ENSG00000196792.12	ENST00000355683.9:ENST00000357479.10:ENST00000555358.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	66	2	2.13176	3.509005	4.88625	0.0173315	0.0135097	0.104099	0.101363
chr16	29555887	29555986	6471154	0	-	0.464646	(0.44,0.476]	chr16	625263	5	INTRON	INTRON	ENSG00000288632:SMG1P2	ENSG00000288632.1:ENSG00000205534.6	ENST00000675579.1:ENST00000566127.1	lncRNA	lncRNA	lncRNA:transcribed_unprocessed_pseudogene	lncRNA:transcribed_unprocessed_pseudogene	4	62	2	1.5191	3.50894	5.49878	0.0526241	1.52058e-4	0.160983	0.0106137
chr7	152152954	152153049	3678387	0	-	0.368421	(0.35,0.378]	chr7	341396	1	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	KMT2C	ENSG00000055609.21	ENST00000360104.8:ENST00000262189.11:ENST00000418061.2:ENST00000680877.1:ENST00000424877.6:ENST00000679560.1:ENST00000682040.1:ENST00000683120.1:ENST00000681923.1:ENST00000679393.1:ENST00000683200.1:ENST00000680029.1:ENST00000683337.1:ENST00000682629.1:ENST00000683178.1:ENST00000683502.1:ENST00000684261.1:ENST00000682283.1:ENST00000473186.5:ENST00000684649.1:ENST00000679882.1:ENST00000684069.1:ENST00000485241.2:ENST00000684330.1:ENST00000683886.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	34	2	2.92952	3.50884	4.08816	0.046021	0.00881187	0.149888	0.084878
chr1	77612151	77612251	492752	0	-	0.34	(0.32,0.35]	chr1	58292	271	INTRON	INTRON	ZZZ3	ENSG00000036549.13	ENST00000370801.8:ENST00000481346.5:ENST00000476275.5:ENST00000370798.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	35	2	2.84569	3.50875	4.17181	0.04531	0.0121137	0.149888	0.0962599
chrX	123975390	123975490	7716889	0	+	0.35	(0.32,0.35]	chrX	789462	116	INTRON	INTRON	STAG2	ENSG00000101972.20	ENST00000394477.5:ENST00000218089.13:ENST00000455404.5:ENST00000483575.5:ENST00000687810.1:ENST00000687071.1:ENST00000469481.1:ENST00000458700.5:ENST00000371160.5:ENST00000435103.5:ENST00000687852.1:ENST00000371145.8:ENST00000692982.1:ENST00000371157.7:ENST00000691035.1:ENST00000686802.1:ENST00000691383.1:ENST00000686127.1:ENST00000371144.7:ENST00000458176.5:ENST00000466748.5:ENST00000471107.1:ENST00000428941.5:ENST00000435215.5:ENST00000394478.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	35	2	2.84569	3.50875	4.17181	0.04531	0.0121137	0.149888	0.0962599
chr7	75448815	75448915	3558555	0	-	0.31	(0.28,0.32]	chr7	331545	62	INTRON	INTRON	POM121C	ENSG00000272391.6	ENST00000615331.5:ENST00000398379.2	protein_coding	protein_coding	protein_coding	protein_coding	2	50	2	2.42868	3.508715	4.58875	0.0230574	0.0105331	0.118056	0.0908969
chr12	110288348	110288447	5226169	0	+	0.40404	(0.378,0.408]	chr12	495234	52	INTRON	INTRON	ATP2A2	ENSG00000174437.18	ENST00000552636.2:ENST00000308664.10:ENST00000539276.7:ENST00000377685.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	172	2	2.6522	3.5086399999999998	4.36508	7.56653e-5	2.15438e-5	0.00729843	0.00377986
chr17	44459683	44459782	6780395	0	-	0.383838	(0.378,0.408]	chr17	668671	139	INTRON	INTRON	GPATCH8	ENSG00000186566.13	ENST00000591680.6:ENST00000335500.8:ENST00000587228.5:ENST00000585614.1:ENST00000590041.5:ENST00000592746.5:ENST00000586037.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	56	2	1.53052	3.50862	5.48672	0.0744544	1.83012e-4	0.192012	0.01176
chr1	185298870	185298963	603511	0	-	0.311828	(0.28,0.32]	chr1	71871	6	EXON_LNCRNA	EXON_LNCRNA:INTRON	IVNS1ABP	ENSG00000116679.16	ENST00000367498.8:ENST00000480769.5:ENST00000459929.5:ENST00000475046.5:ENST00000494880.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	42	2	2.78004	3.508615	4.23719	0.0264147	0.0193244	0.133676	0.108861
chr2	171726916	171727016	918112	0	+	0.32	(0.28,0.32]	chr2	101131	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	DYNC1I2	ENSG00000077380.16	ENST00000340296.8:ENST00000397119.8:ENST00000410079.7:ENST00000508530.5:ENST00000409197.5:ENST00000409317.5:ENST00000409773.5:ENST00000409453.5:ENST00000482454.5:ENST00000479806.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	42	2	2.78004	3.508615	4.23719	0.0264147	0.0193244	0.133676	0.108861
chr19	17279260	17279342	7029591	0	+	0.329268	(0.32,0.35]	chr19	699898	3	UTR3	UTR3:EXON_MRNA:INTRON	BABAM1	ENSG00000105393.16	ENST00000594247.5:ENST00000359435.8:ENST00000598188.6:ENST00000601043.5:ENST00000598567.1:ENST00000601232.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	46	2	2.25173	3.50837	4.76501	0.0180122	0.0114287	0.114436	0.0886611
chr3	167723720	167723819	1853938	0	-	0.333333	(0.32,0.35]	chr3	186320	31	INTRON	INTRON	PDCD10	ENSG00000114209.15	ENST00000392750.7:ENST00000473645.6:ENST00000497056.6:ENST00000492396.5:ENST00000461494.5:ENST00000470131.5:ENST00000475915.6:ENST00000487947.6:ENST00000471885.5:ENST00000462725.6:ENST00000492139.5:ENST00000483451.5:ENST00000494502.6:ENST00000464360.5:ENST00000481136.1:ENST00000487678.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	46	2	2.25173	3.50837	4.76501	0.0180122	0.0114287	0.114436	0.0886611
chr10	28605197	28605297	4414533	0	+	0.32	(0.28,0.32]	chr10	407171	88	INTRON	INTRON	WAC	ENSG00000095787.24	ENST00000680735.1:ENST00000375664.8:ENST00000428935.6:ENST00000628285.3:ENST00000681112.1:ENST00000679570.1:ENST00000375646.5:ENST00000354911.9:ENST00000347934.8:ENST00000420266.6:ENST00000679398.1:ENST00000424454.5:ENST00000442148.6:ENST00000414108.6:ENST00000679428.1:ENST00000439676.5:ENST00000345541.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	74	2	1.41943	3.50829	5.59715	0.0528302	0.00123856	0.178899	0.0322669
chr6	163564805	163564900	3033218	0	+	0.315789	(0.28,0.32]	chr6	282606	2	UTR3	UTR3:EXON_MRNA:INTRON	QKI	ENSG00000112531.17	ENST00000361758.8:ENST00000453779.6:ENST00000275262.11:ENST00000392127.6:ENST00000361752.8:ENST00000361195.6:ENST00000545607.5:ENST00000537883.5:ENST00000544361.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	74	2	1.41943	3.50829	5.59715	0.0528302	0.00123856	0.178899	0.0322669
chr12	31977004	31977104	5106780	0	+	0.32	(0.28,0.32]	chr12	482333	63	INTRON	INTRON	RESF1	ENSG00000174718.12	ENST00000541981.5:ENST00000540924.5:ENST00000312561.9:ENST00000535596.5:ENST00000397578.7:ENST00000381054.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	86	2	3.40041	3.5082050000000002	3.616	0.00273088	7.42427e-4	0.0467642	0.024913
chr1	110345892	110345978	182411	0	+	0.22093	[0,0.28]	chr1	20243	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RBM15	ENSG00000162775.17	ENST00000652747.1:ENST00000618772.4:ENST00000487146.8:ENST00000369784.9:ENST00000650953.2:ENST00000654015.1:ENST00000617047.1	protein_coding	protein_coding	protein_coding	protein_coding	1	39	2	2.63238	3.5081249999999997	4.38387	0.0501911	0.0259691	0.156383	0.133676
chr15	64557143	64557243	6045055	0	+	0.27	[0,0.28]	chr15	575696	542	INTRON	INTRON	ZNF609	ENSG00000180357.10	ENST00000326648.5:ENST00000558680.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	39	2	2.63238	3.5081249999999997	4.38387	0.0501911	0.0259691	0.156383	0.133676
chr2	238436413	238436513	1052662	0	+	0.23	[0,0.28]	chr2	111992	4	SS5_PROX	SS5_PROX:INTRON	ASB1	ENSG00000065802.12	ENST00000463352.5:ENST00000264607.9:ENST00000409297.1:ENST00000438264.5:ENST00000491653.1:ENST00000468122.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	39	2	2.63238	3.5081249999999997	4.38387	0.0501911	0.0259691	0.156383	0.133676
chr11	5497365	5497465	4898196	0	-	0.38	(0.378,0.408]	chr11	459195	281	INTRON	INTRON	HBG2:ENSG00000239920:HBE1:OR51B5	ENSG00000196565.15:ENSG00000239920.2:ENSG00000213931.7:ENSG00000167355.8	ENST00000380252.6:ENST00000380259.7:ENST00000292896.3:ENST00000380237.5:ENST00000420726.6:ENST00000420465.6:ENST00000415970.6:ENST00000418729.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:nonsense_mediated_decay:processed_transcript	5	154	2	3.16012	3.508075	3.85603	1.44288e-4	7.26848e-6	0.0109794	0.00191587
chr2	169572271	169572345	1261687	0	-	0.324324	(0.32,0.35]	chr2	133685	1	SS3_PROX	SS3_PROX:INTRON	FASTKD1	ENSG00000138399.18	ENST00000453153.7:ENST00000453929.6:ENST00000445210.1:ENST00000438035.5	protein_coding	protein_coding	protein_coding	protein_coding	3	107	2	3.43629	3.5080400000000003	3.57979	0.00118589	1.14798e-4	0.0315652	0.00917224
chr1	184065525	184065624	274957	0	+	0.414141	(0.408,0.44]	chr1	32204	69	INTRON	INTRON	TSEN15	ENSG00000198860.14	ENST00000423085.7:ENST00000361641.6:ENST00000485209.6:ENST00000643231.1:ENST00000533373.6:ENST00000647437.1:ENST00000647465.1:ENST00000367518.4:ENST00000643916.1:ENST00000645668.2:ENST00000644145.1:ENST00000644592.1:ENST00000646297.2:ENST00000645963.2:ENST00000644479.1:ENST00000462677.3:ENST00000643702.1:ENST00000644815.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	43	2	2.49983	3.5079350000000002	4.51604	0.0137419	0.00713527	0.0949306	0.0756118
chr17	76756101	76756201	6677724	0	+	0.48	(0.476,0.515]	chr17	652244	15	INTRON	INTRON	MFSD11	ENSG00000092931.12	ENST00000586622.5:ENST00000621483.4:ENST00000355954.7:ENST00000588460.6:ENST00000593181.5:ENST00000336509.8:ENST00000590514.5:ENST00000685175.1:ENST00000588670.5:ENST00000588768.5:ENST00000585584.5:ENST00000585958.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	43	2	2.48551	3.5078700000000005	4.53023	0.0119748	0.00756632	0.0899583	0.0773151
chr4	139113531	139113631	2246704	0	-	0.51	(0.476,0.515]	chr4	219568	108	INTRON	INTRON	ELF2	ENSG00000109381.21	ENST00000394235.6:ENST00000686138.1:ENST00000379550.5:ENST00000511184.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	43	2	2.48551	3.5078700000000005	4.53023	0.0119748	0.00756632	0.0899583	0.0773151
chr16	24141121	24141221	6326823	0	+	0.34	(0.32,0.35]	chr16	605753	168	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1	protein_coding	protein_coding	protein_coding	protein_coding	1	39	2	2.74415	3.5076400000000003	4.27113	0.0199982	0.0198267	0.120668	0.109608
chr8	27803833	27803932	3722085	0	+	0.333333	(0.32,0.35]	chr8	345985	5	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	ESCO2	ENSG00000171320.15	ENST00000522378.5:ENST00000305188.13:ENST00000397418.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	39	2	2.74415	3.5076400000000003	4.27113	0.0199982	0.0198267	0.120668	0.109608
chr2	15476380	15476476	1072307	0	-	0.40625	(0.378,0.408]	chr2	114410	1	INTRON	INTRON	NBAS	ENSG00000151779.13	ENST00000281513.10	protein_coding	protein_coding	protein_coding	protein_coding	2	44	2	2.51464	3.5076	4.50056	0.015974	0.00684341	0.101453	0.0748032
chr12	131938573	131938672	5250099	0	+	0.585859	(0.57,1]	chr12	499261	38	INTRON	INTRON	PUS1	ENSG00000177192.14	ENST00000443358.6:ENST00000322060.9:ENST00000376649.8:ENST00000542167.2:ENST00000538037.5:ENST00000535067.5:ENST00000537484.1	protein_coding	protein_coding	protein_coding	protein_coding	1	21	2	2.52405	3.50756	4.49107	0.0263139	0.00220544	0.133676	0.0417893
chr19	3199492	3199588	6998983	0	+	0.625	(0.57,1]	chr19	694106	2	INTRON	INTRON	NCLN	ENSG00000125912.11	ENST00000590671.5:ENST00000246117.9:ENST00000588428.5:ENST00000587740.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	21	2	2.52405	3.50756	4.49107	0.0263139	0.00220544	0.133676	0.0417893
chr7	99448273	99448373	3361948	0	+	0.64	(0.57,1]	chr7	313990	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	CPSF4	ENSG00000160917.15	ENST00000436336.6:ENST00000292476.10:ENST00000451876.5:ENST00000430038.5:ENST00000441580.5:ENST00000412686.5:ENST00000484112.5:ENST00000452047.1:ENST00000471455.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	21	2	2.52405	3.50756	4.49107	0.0263139	0.00220544	0.133676	0.0417893
chr10	68922766	68922866	4443236	0	+	0.45	(0.44,0.476]	chr10	409779	24	INTRON	INTRON	DDX50	ENSG00000107625.14	ENST00000373585.8:ENST00000460470.1:ENST00000466265.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	50	2	1.81595	3.507375	5.1988	0.0317953	0.00151532	0.14477	0.0352794
chr11	9291210	9291308	4909199	0	-	0.489796	(0.476,0.515]	chr11	460149	23	INTRON	INTRON	TMEM41B	ENSG00000166471.11	ENST00000524543.5:ENST00000528080.6:ENST00000299596.8:ENST00000611268.4:ENST00000527813.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	32	2	2.87879	3.507325	4.13586	0.031846	0.00999149	0.13151	0.0879541
chr5	32296570	32296670	2598236	0	-	0.5	(0.476,0.515]	chr5	246855	1	SS3_PROX	SS3_PROX:INTRON	MTMR12	ENSG00000150712.11	ENST00000280285.9:ENST00000382142.8:ENST00000264934.5:ENST00000505419.5:ENST00000513622.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	32	2	2.87879	3.507325	4.13586	0.031846	0.00999149	0.13151	0.0879541
chr12	123391217	123391304	5242648	0	+	0.574713	(0.57,1]	chr12	498186	6	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	KMT5A	ENSG00000183955.14	ENST00000402868.8:ENST00000437519.5:ENST00000478781.6:ENST00000461103.5:ENST00000462311.1:ENST00000437502.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	28	2	2.23711	3.507205	4.7773	0.0172108	5.07088e-4	0.104099	0.0202328
chr11	48059116	48059216	4790006	0	+	0.47	(0.44,0.476]	chr11	443275	124	INTRON	INTRON	PTPRJ	ENSG00000149177.14	ENST00000418331.7:ENST00000440289.6:ENST00000527952.1:ENST00000534219.5:ENST00000526550.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	31	2	2.58033	3.50705	4.43377	0.0247511	0.0162803	0.131869	0.101453
chr12	2918864	2918964	5066287	0	+	0.45	(0.44,0.476]	chr12	478117	89	INTRON	INTRON	TULP3	ENSG00000078246.17	ENST00000540184.5:ENST00000544943.5:ENST00000448120.7:ENST00000545331.5:ENST00000538354.5:ENST00000397132.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	31	2	2.58033	3.50705	4.43377	0.0247511	0.0162803	0.131869	0.101453
chr21	33272605	33272705	7395881	0	+	0.47	(0.44,0.476]	chr21	753327	37	INTRON	INTRON	IL10RB	ENSG00000243646.11	ENST00000290200.7:ENST00000422891.5:ENST00000637650.2:ENST00000609556.3:ENST00000696764.1:ENST00000493295.5:ENST00000498371.1:ENST00000696765.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	31	2	2.58033	3.50705	4.43377	0.0247511	0.0162803	0.131869	0.101453
chr3	17600753	17600853	1629006	0	-	0.47	(0.44,0.476]	chr3	168235	138	INTRON	INTRON	TBC1D5	ENSG00000131374.15	ENST00000253692.11:ENST00000696125.1:ENST00000414318.2:ENST00000429383.8:ENST00000446818.6:ENST00000415814.6:ENST00000452492.6:ENST00000412981.5:ENST00000428355.5:ENST00000425944.5:ENST00000430169.5:ENST00000445294.5:ENST00000414349.5:ENST00000443499.6:ENST00000444756.5:ENST00000497531.5:ENST00000443386.5:ENST00000507877.5:ENST00000446863.5:ENST00000434420.1:ENST00000444471.5:ENST00000486224.5:ENST00000433533.5:ENST00000481396.5:ENST00000480435.5:ENST00000423331.6:ENST00000485432.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	31	2	2.58033	3.50705	4.43377	0.0247511	0.0162803	0.131869	0.101453
chr3	25647965	25648065	1642000	0	-	0.45	(0.44,0.476]	chr3	168598	21	INTRON	INTRON	TOP2B	ENSG00000077097.16	ENST00000264331.9:ENST00000435706.6:ENST00000424225.1	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	2.58033	3.50705	4.43377	0.0247511	0.0162803	0.131869	0.101453
chr3	27433383	27433476	1643559	0	-	0.44086	(0.44,0.476]	chr3	168845	2	SS3_PROX	SS3_PROX:SS5_PROX:INTRON	SLC4A7	ENSG00000033867.17	ENST00000425128.6:ENST00000454389.6:ENST00000295736.9:ENST00000428386.5:ENST00000445684.5:ENST00000437179.5:ENST00000438530.5:ENST00000440156.5:ENST00000446700.5:ENST00000455077.5:ENST00000457377.5:ENST00000437266.5:ENST00000428179.1:ENST00000428005.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	31	2	2.58033	3.50705	4.43377	0.0247511	0.0162803	0.131869	0.101453
chr8	21986280	21986370	3711601	0	+	0.466667	(0.44,0.476]	chr8	344474	2	INTRON	INTRON	XPO7	ENSG00000130227.17	ENST00000252512.14:ENST00000433566.8	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	2.58033	3.50705	4.43377	0.0247511	0.0162803	0.131869	0.101453
chr1	65349307	65349407	136489	0	+	0.32	(0.28,0.32]	chr1	15358	32	INTRON	INTRON	DNAJC6	ENSG00000116675.16	ENST00000463018.5:ENST00000494710.6:ENST00000263441.11:ENST00000395325.7:ENST00000483402.1:ENST00000371069.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	39	2	2.32871	3.50699	4.68527	0.0581621	0.00819419	0.167723	0.0810802
chr19	32704607	32704707	7049803	0	+	0.3	(0.28,0.32]	chr19	702960	116	INTRON	INTRON	NUDT19	ENSG00000213965.4	ENST00000397061.4	protein_coding	protein_coding	protein_coding	protein_coding	1	39	2	2.32871	3.50699	4.68527	0.0581621	0.00819419	0.167723	0.0810802
chrX	123725073	123725172	7878979	0	-	0.313131	(0.28,0.32]	chrX	802595	118	INTRON	INTRON	THOC2	ENSG00000125676.20	ENST00000245838.13:ENST00000355725.8:ENST00000433883.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	39	2	2.32871	3.50699	4.68527	0.0581621	0.00819419	0.167723	0.0810802
chr1	168013682	168013781	249269	0	+	0.333333	(0.32,0.35]	chr1	29602	85	INTRON	INTRON	DCAF6	ENSG00000143164.16	ENST00000432587.6:ENST00000367843.7:ENST00000470721.5:ENST00000367840.4:ENST00000312263.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	239	2	3.06266	3.50693	3.9512	1.50075e-5	1.30843e-5	0.00311444	0.0026794
chr1	108888433	108888531	179031	0	+	0.469388	(0.44,0.476]	chr1	19503	19	INTRON	INTRON	GPSM2	ENSG00000121957.15	ENST00000406462.6:ENST00000675829.1:ENST00000441735.2:ENST00000642355.1:ENST00000435987.5:ENST00000645164.2:ENST00000675776.1:ENST00000264126.9:ENST00000676404.1:ENST00000674731.1:ENST00000674914.1:ENST00000674700.1:ENST00000643094.1:ENST00000675086.1:ENST00000676184.1:ENST00000675087.1:ENST00000675617.1:ENST00000435475.5:ENST00000446797.2:ENST00000674663.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	31	2	2.49112	3.5069100000000004	4.5227	0.0315968	0.0128818	0.144381	0.0926667
chr1	153976405	153976498	558112	0	-	0.462366	(0.44,0.476]	chr1	66166	1	SS5_PROX	SS5_PROX:INTRON	JTB	ENSG00000143543.15	ENST00000271843.9:ENST00000368589.5:ENST00000356648.5:ENST00000428469.1:ENST00000461365.1:ENST00000471173.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	31	2	2.49112	3.5069100000000004	4.5227	0.0315968	0.0128818	0.144381	0.0926667
chr1	154176649	154176748	558423	0	-	0.444444	(0.44,0.476]	chr1	66264	4	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TPM3	ENSG00000143549.21	ENST00000611659.4:ENST00000368533.8:ENST00000469717.5:ENST00000330188.13:ENST00000341485.10:ENST00000312970.13:ENST00000341372.8:ENST00000328159.9:ENST00000509409.5:ENST00000651873.1:ENST00000271850.11:ENST00000302206.9:ENST00000368531.6:ENST00000323144.12:ENST00000651641.1:ENST00000368530.7:ENST00000509601.1:ENST00000651644.1:ENST00000368527.7:ENST00000473036.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	31	2	2.49112	3.5069100000000004	4.5227	0.0315968	0.0128818	0.144381	0.0926667
chr10	48412565	48412664	4432055	0	+	0.444444	(0.44,0.476]	chr10	408600	20	INTRON	INTRON	MAPK8	ENSG00000107643.17	ENST00000395611.7:ENST00000374189.6:ENST00000429041.6:ENST00000374179.8:ENST00000360332.7:ENST00000374182.7:ENST00000374176.8:ENST00000374174.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	31	2	2.49112	3.5069100000000004	4.5227	0.0315968	0.0128818	0.144381	0.0926667
chr11	61456102	61456202	4796789	0	+	0.47	(0.44,0.476]	chr11	444318	95	INTRON	INTRON	ENSG00000256591	ENSG00000256591.5	ENST00000544025.5:ENST00000541135.5:ENST00000536670.5:ENST00000538594.5:ENST00000544801.5:ENST00000544880.1:ENST00000543044.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	31	2	2.49112	3.5069100000000004	4.5227	0.0315968	0.0128818	0.144381	0.0926667
chr17	31993515	31993598	6596251	0	+	0.457831	(0.44,0.476]	chr17	641594	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SUZ12	ENSG00000178691.11	ENST00000322652.10:ENST00000580398.1	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	2.49112	3.5069100000000004	4.5227	0.0315968	0.0128818	0.144381	0.0926667
chr17	38300465	38300564	6605132	0	+	0.454545	(0.44,0.476]	chr17	642941	6	INTRON	INTRON	MRPL45	ENSG00000278845.5	ENST00000619548.1:ENST00000613675.5	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	2.49112	3.5069100000000004	4.5227	0.0315968	0.0128818	0.144381	0.0926667
chr2	43928554	43928654	1109911	0	-	0.47	(0.44,0.476]	chr2	119006	22	INTRON	INTRON	LRPPRC	ENSG00000138095.20	ENST00000260665.12:ENST00000682308.1:ENST00000683459.1:ENST00000683623.1:ENST00000683125.1:ENST00000683994.1:ENST00000684619.1:ENST00000683833.1:ENST00000682546.1:ENST00000682585.1:ENST00000683220.1:ENST00000683796.1:ENST00000682607.1:ENST00000683590.1:ENST00000684306.1:ENST00000683213.1:ENST00000682779.1:ENST00000682885.1:ENST00000684743.1:ENST00000683346.1:ENST00000683072.1:ENST00000682303.1:ENST00000683329.1:ENST00000682933.1:ENST00000684383.1:ENST00000682480.1:ENST00000684290.1:ENST00000684341.1:ENST00000682595.1:ENST00000683645.1:ENST00000683802.1:ENST00000682845.1:ENST00000684397.1:ENST00000681961.1:ENST00000683694.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	31	2	2.49112	3.5069100000000004	4.5227	0.0315968	0.0128818	0.144381	0.0926667
chr2	110676332	110676432	1206855	0	-	0.45	(0.44,0.476]	chr2	128738	4	SS5_PROX	SS5_PROX:INTRON	BUB1	ENSG00000169679.15	ENST00000302759.11:ENST00000535254.6:ENST00000409311.5:ENST00000466333.5:ENST00000666956.1:ENST00000465029.5:ENST00000447014.5:ENST00000420328.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	31	2	2.49112	3.5069100000000004	4.5227	0.0315968	0.0128818	0.144381	0.0926667
chr8	22493005	22493104	3713840	0	+	0.444444	(0.44,0.476]	chr8	344885	170	INTRON	INTRON	PPP3CC	ENSG00000120910.15	ENST00000518852.5:ENST00000240139.10:ENST00000289963.12:ENST00000397775.7:ENST00000522034.5	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	2.49112	3.5069100000000004	4.5227	0.0315968	0.0128818	0.144381	0.0926667
chr10	116905332	116905431	4699487	0	-	0.434343	(0.408,0.44]	chr10	433616	30	INTRON	INTRON	SHTN1	ENSG00000187164.20	ENST00000355371.9:ENST00000615301.4:ENST00000260777.14:ENST00000497044.5:ENST00000392901.10:ENST00000392903.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	32	2	2.89193	3.5069	4.12187	0.0354689	0.00950364	0.137535	0.0863579
chr19	5695553	5695653	7124454	0	-	0.53	(0.515,0.57]	chr19	717104	1	SS5_PROX	SS5_PROX:INTRON	LONP1	ENSG00000196365.12	ENST00000360614.8:ENST00000587552.5:ENST00000540670.6:ENST00000593119.5:ENST00000585374.5:ENST00000590558.5:ENST00000590729.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	40	2	2.01737	3.5068599999999996	4.99635	0.0352218	8.06602e-4	0.137535	0.0258804
chr22	20935143	20935242	7480695	0	+	0.525253	(0.515,0.57]	chr22	763096	5	INTRON	INTRON	CRKL	ENSG00000099942.13	ENST00000354336.8:ENST00000411769.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	40	2	2.01737	3.5068599999999996	4.99635	0.0352218	8.06602e-4	0.137535	0.0258804
chrX	154765718	154765806	7739311	0	+	0.386364	(0.378,0.408]	chrX	792389	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DKC1	ENSG00000130826.19	ENST00000620277.4:ENST00000413910.6:ENST00000426673.6:ENST00000696575.1:ENST00000369550.10:ENST00000696579.1:ENST00000696578.1:ENST00000696577.1:ENST00000696576.1:ENST00000696580.1:ENST00000696581.1:ENST00000696582.1:ENST00000696583.1:ENST00000696627.1:ENST00000473552.1:ENST00000696628.1:ENST00000696584.1:ENST00000696585.1:ENST00000696586.1:ENST00000696587.1:ENST00000696588.1:ENST00000437719.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	51	2	1.8374	3.5068349999999997	5.17627	0.0299228	0.00208234	0.142135	0.0411801
chr16	81462609	81462709	6405175	0	+	0.38	(0.378,0.408]	chr16	615026	167	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8	protein_coding	protein_coding	protein_coding	protein_coding	3	99	2	3.28937	3.5066699999999997	3.72397	3.2389e-4	3.23378e-4	0.0165891	0.0159645
chr17	42602866	42602965	6773591	0	-	0.50505	(0.476,0.515]	chr17	667221	59	INTRON	INTRON	RETREG3	ENSG00000141699.11	ENST00000589797.5:ENST00000309428.10:ENST00000585894.5:ENST00000586870.5:ENST00000585726.5:ENST00000591547.5:ENST00000593251.5:ENST00000588423.1:ENST00000586796.1:ENST00000590541.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	42	2	2.32001	3.506605	4.6932	0.0136217	0.00753088	0.101682	0.074841
chr2	170936223	170936323	916461	0	+	0.48	(0.476,0.515]	chr2	100865	2	SS3_PROX	SS3_PROX:INTRON	GORASP2	ENSG00000115806.13	ENST00000471559.5:ENST00000444801.5:ENST00000234160.5:ENST00000493692.5:ENST00000497674.5:ENST00000455067.5:ENST00000454751.5:ENST00000442798.5:ENST00000497928.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	42	2	2.32001	3.506605	4.6932	0.0136217	0.00753088	0.101682	0.074841
chr10	63420940	63421040	4634941	0	-	0.31	(0.28,0.32]	chr10	426236	401	INTRON	INTRON	JMJD1C	ENSG00000171988.20	ENST00000399262.7:ENST00000633035.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	48	2	2.0243	3.50651	4.98872	0.0364967	0.00838468	0.153759	0.0774402
chr22	19894658	19894753	7555837	0	-	0.431579	(0.408,0.44]	chr22	772498	9	UTR3	UTR3:EXON_MRNA:INTRON	TXNRD2	ENSG00000184470.21	ENST00000400518.5:ENST00000542719.6:ENST00000494454.5:ENST00000474308.5:ENST00000400525.6:ENST00000400521.7:ENST00000400519.6:ENST00000634537.1:ENST00000635155.1:ENST00000491939.6:ENST00000334363.14	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:non_stop_decay:nonsense_mediated_decay:processed_transcript	7	75	2	1.24904	3.506405	5.76377	0.055886	1.64089e-4	0.18407	0.0116917
chr16	8112672	8112756	6441636	0	-	0.535714	(0.515,0.57]	chr16	620354	4	EXON_LNCRNA	EXON_LNCRNA	ENSG00000260289	ENSG00000260289.2	ENST00000670665.1:ENST00000654046.1:ENST00000567103.2	lncRNA	lncRNA	lncRNA	lncRNA	6	146	2	3.15133	3.506385	3.86144	2.75321e-5	4.63384e-6	0.00430942	0.00144728
chr2	152721854	152721952	894282	0	+	0.285714	(0.28,0.32]	chr2	99115	14	EXON_MRNA	EXON_MRNA:INTRON	ARL6IP6	ENSG00000177917.12	ENST00000690727.1:ENST00000685752.1:ENST00000688293.1:ENST00000686839.1:ENST00000689155.1:ENST00000690703.1:ENST00000691702.1:ENST00000691523.1:ENST00000688012.1:ENST00000687504.1:ENST00000455875.6:ENST00000692124.1:ENST00000693573.1:ENST00000686951.1:ENST00000692399.1:ENST00000425034.6:ENST00000686080.1:ENST00000326446.10:ENST00000688171.1:ENST00000463690.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	86	2	3.43158	3.50629	3.581	0.00244075	8.63544e-4	0.0445752	0.0266494
chr7	152403445	152403545	3680968	0	-	0.37	(0.35,0.378]	chr7	341660	444	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000682301.1:ENST00000452749.2:ENST00000680867.1:ENST00000683800.1:ENST00000684278.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	134	2	3.26464	3.50622	3.7478	4.0384e-4	1.64164e-5	0.0185763	0.00305726
chr1	45693547	45693633	93634	0	+	0.5	(0.476,0.515]	chr1	12672	5	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TMEM69	ENSG00000159596.7	ENST00000372025.5:ENST00000496366.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	42	2	1.91817	3.5061999999999998	5.09423	0.0459211	0.00204588	0.164984	0.04086
chr12	121895141	121895241	5238244	0	+	0.49	(0.476,0.515]	chr12	497277	3	SS5_PROX	SS5_PROX:INTRON	PSMD9	ENSG00000110801.14	ENST00000537407.5:ENST00000540962.5:ENST00000261817.6:ENST00000538613.5:ENST00000542602.1:ENST00000541212.6:ENST00000543699.5:ENST00000535293.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	42	2	1.91817	3.5061999999999998	5.09423	0.0459211	0.00204588	0.164984	0.04086
chr1	90028494	90028593	161033	0	+	0.333333	(0.32,0.35]	chr1	17365	9	UTR3	UTR3:EXON_MRNA	ZNF326	ENSG00000162664.17	ENST00000340281.9:ENST00000370447.3	protein_coding	protein_coding	protein_coding	protein_coding	2	50	2	1.83416	3.5061899999999997	5.17822	0.0631198	0.00115625	0.176946	0.0313436
chr1	93297540	93297639	508919	0	-	0.343434	(0.32,0.35]	chr1	59957	65	INTRON	INTRON	CCDC18-AS1	ENSG00000223745.8	ENST00000413606.5:ENST00000457025.5:ENST00000451302.6:ENST00000668257.1:ENST00000446528.6:ENST00000415150.5:ENST00000455474.5:ENST00000447577.5:ENST00000442860.5:ENST00000414430.5:ENST00000429859.5:ENST00000424517.3:ENST00000427669.5:ENST00000661111.1	lncRNA	lncRNA	lncRNA	lncRNA	2	50	2	1.83416	3.5061899999999997	5.17822	0.0631198	0.00115625	0.176946	0.0313436
chr12	48100592	48100686	5318402	0	-	0.414894	(0.408,0.44]	chr12	506210	11	INTRON	INTRON	SENP1	ENSG00000079387.14	ENST00000549518.6:ENST00000552189.5:ENST00000448372.5:ENST00000549595.5:ENST00000551798.1:ENST00000547181.5:ENST00000549882.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	42	2	1.93243	3.50613	5.07983	0.0441194	0.00247652	0.162255	0.0446195
chrX	65729912	65730012	7671713	0	+	0.41	(0.408,0.44]	chrX	785163	2	SS5_PROX	SS5_PROX:INTRON	MSN	ENSG00000147065.17	ENST00000360270.7	protein_coding	protein_coding	protein_coding	protein_coding	2	42	2	1.93243	3.50613	5.07983	0.0441194	0.00247652	0.162255	0.0446195
chr1	168009088	168009187	249223	0	+	0.535354	(0.515,0.57]	chr1	29602	39	INTRON	INTRON	DCAF6	ENSG00000143164.16	ENST00000432587.6:ENST00000367843.7:ENST00000470721.5:ENST00000367840.4:ENST00000312263.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	79	2	3.23735	3.506125	3.7749	2.59829e-4	2.1866e-4	0.0148796	0.0129728
chr7	150270052	150270152	3673115	0	-	0.57	(0.515,0.57]	chr7	340876	206	INTRON	INTRON	ACTR3C	ENSG00000106526.11	ENST00000478393.5:ENST00000683684.1:ENST00000252071.8	protein_coding	protein_coding	protein_coding	protein_coding	3	79	2	3.23735	3.506125	3.7749	2.59829e-4	2.1866e-4	0.0148796	0.0129728
chr1	51682810	51682910	100050	0	+	0.31	(0.28,0.32]	chr1	13258	126	INTRON	INTRON	OSBPL9	ENSG00000117859.19	ENST00000371714.5:ENST00000428468.6:ENST00000447887.5:ENST00000495776.5:ENST00000435274.6:ENST00000453295.5:ENST00000489990.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	36	2	2.67453	3.50609	4.33765	0.039714	0.021289	0.143072	0.123318
chr16	48360720	48360816	6483809	0	-	0.3125	(0.28,0.32]	chr16	627072	3	UTR3	UTR3:EXON_MRNA:INTRON	SIAH1	ENSG00000196470.12	ENST00000568007.5:ENST00000565620.5:ENST00000394725.3:ENST00000356721.3:ENST00000380006.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	36	2	2.67453	3.50609	4.33765	0.039714	0.021289	0.143072	0.123318
chr3	172780273	172780372	1563524	0	+	0.282828	(0.28,0.32]	chr3	161783	59	INTRON	INTRON	ECT2	ENSG00000114346.14	ENST00000232458.9:ENST00000540509.5:ENST00000392692.8:ENST00000417960.5:ENST00000441497.6:ENST00000444250.1	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	2.67453	3.50609	4.33765	0.039714	0.021289	0.143072	0.123318
chr1	180798606	180798706	271264	0	+	0.5	(0.476,0.515]	chr1	31626	104	INTRON	INTRON	XPR1	ENSG00000143324.14	ENST00000367590.9:ENST00000367589.3	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	2.23335	3.505955	4.77856	0.0634557	0.00305743	0.177047	0.0509893
chr19	10668730	10668829	7013357	0	+	0.50505	(0.476,0.515]	chr19	696763	17	INTRON	INTRON	ILF3	ENSG00000129351.17	ENST00000449870.5:ENST00000587928.5:ENST00000407004.7:ENST00000589998.5:ENST00000589600.5:ENST00000589283.5:ENST00000590009.5:ENST00000593199.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	33	2	2.23335	3.505955	4.77856	0.0634557	0.00305743	0.177047	0.0509893
chrX	73976061	73976161	7682419	0	+	0.49	(0.476,0.515]	chrX	786638	77	INTRON	INTRON	JPX	ENSG00000225470.8	ENST00000664637.1:ENST00000639185.1:ENST00000655090.1:ENST00000640437.1:ENST00000660546.1:ENST00000667886.1:ENST00000660840.1:ENST00000657179.1:ENST00000670506.1:ENST00000657910.1:ENST00000662120.1:ENST00000671207.1:ENST00000659254.1:ENST00000656624.1:ENST00000667573.1:ENST00000660856.1:ENST00000660836.1:ENST00000668590.1:ENST00000658649.1:ENST00000414209.6:ENST00000654137.1:ENST00000670994.1:ENST00000602772.5:ENST00000655879.1:ENST00000657372.1:ENST00000657096.1:ENST00000602985.6:ENST00000670685.1:ENST00000670503.1:ENST00000663027.1:ENST00000654995.1:ENST00000602895.6:ENST00000654374.1:ENST00000660087.1:ENST00000665032.1:ENST00000671336.1:ENST00000671476.1:ENST00000667057.1:ENST00000670192.1:ENST00000670464.1:ENST00000665345.1:ENST00000661546.1:ENST00000662543.1:ENST00000602938.6:ENST00000664295.1:ENST00000654005.1:ENST00000669149.1:ENST00000659852.1:ENST00000656509.1:ENST00000602294.6:ENST00000667294.1:ENST00000663470.1:ENST00000602920.6:ENST00000671021.1:ENST00000659849.1:ENST00000667937.1:ENST00000661130.1:ENST00000654196.1:ENST00000655994.1:ENST00000659373.1:ENST00000662239.1:ENST00000670805.1:ENST00000656263.1:ENST00000653069.1:ENST00000657638.1:ENST00000653808.1:ENST00000653929.1:ENST00000653885.1:ENST00000659023.1:ENST00000602546.5:ENST00000659622.1:ENST00000671518.1:ENST00000670408.1	lncRNA	lncRNA	lncRNA	lncRNA	1	33	2	2.23335	3.505955	4.77856	0.0634557	0.00305743	0.177047	0.0509893
chr17	76436040	76436140	6842955	0	-	0.48	(0.476,0.515]	chr17	676846	301	INTRON	INTRON	UBE2O	ENSG00000175931.13	ENST00000319380.12:ENST00000586409.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	50	2	1.86014	3.5057850000000004	5.15143	0.0277606	0.00166579	0.137011	0.0369207
chr19	34396757	34396857	7052819	0	+	0.51	(0.476,0.515]	chr19	703423	1	SS5_PROX	SS5_PROX:INTRON	GPI	ENSG00000105220.17	ENST00000415930.8:ENST00000588991.7:ENST00000356487.11:ENST00000647446.1:ENST00000586425.2:ENST00000643067.1:ENST00000586392.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	91	2	3.27004	3.50574	3.74144	4.08784e-4	2.20887e-4	0.0185763	0.0130309
chr3	44494846	44494937	1676730	0	-	0.527473	(0.515,0.57]	chr3	171148	1	UTR3	UTR3:EXON_MRNA	ZNF852	ENSG00000178917.17	ENST00000650400.1	protein_coding	protein_coding	protein_coding	protein_coding	2	38	2	2.32836	3.50573	4.6831	0.0126662	0.00471288	0.0982897	0.0600108
chr1	113080933	113081033	188171	0	+	0.5	(0.476,0.515]	chr1	20854	69	INTRON	INTRON	LRIG2	ENSG00000198799.12	ENST00000361127.6	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	2.48527	3.505635	4.526	0.03496	0.00699701	0.13747500000000001	0.0754576
chr10	21585893	21585993	4404933	0	+	0.5	(0.476,0.515]	chr10	406454	2	SS3_PROX	SS3_PROX:INTRON	MLLT10	ENSG00000078403.17	ENST00000651097.1:ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000650772.1:ENST00000651298.1:ENST00000495130.5:ENST00000377059.7:ENST00000476557.5:ENST00000462999.5:ENST00000430455.2:ENST00000479634.1:ENST00000480415.6:ENST00000652258.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	33	2	2.48527	3.505635	4.526	0.03496	0.00699701	0.13747500000000001	0.0754576
chr18	12966582	12966682	6876346	0	+	0.5	(0.476,0.515]	chr18	681295	17	INTRON	INTRON	SEH1L	ENSG00000085415.16	ENST00000262124.15:ENST00000399892.7:ENST00000585730.5:ENST00000589446.5:ENST00000587761.1:ENST00000588251.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	33	2	2.48527	3.505635	4.526	0.03496	0.00699701	0.13747500000000001	0.0754576
chr21	43875744	43875844	7413895	0	+	0.51	(0.476,0.515]	chr21	755688	80	INTRON	INTRON	AGPAT3	ENSG00000160216.21	ENST00000291572.13:ENST00000448287.5	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	2.48527	3.505635	4.526	0.03496	0.00699701	0.13747500000000001	0.0754576
chr12	123355526	123355626	5445115	0	-	0.55	(0.515,0.57]	chr12	521118	47	INTRON	INTRON	SBNO1	ENSG00000139697.14	ENST00000602398.3:ENST00000267176.8	protein_coding	protein_coding	protein_coding	protein_coding	2	38	2	2.03361	3.505415	4.97722	0.0325854	0.00168681	0.145164	0.0370386
chr7	7721246	7721346	3276513	0	+	0.32	(0.28,0.32]	chr7	304705	289	INTRON	INTRON	UMAD1	ENSG00000219545.12	ENST00000493246.5:ENST00000682710.1:ENST00000463725.5:ENST00000638342.1:ENST00000636849.1:ENST00000639343.1:ENST00000639110.1:ENST00000482067.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	48	2	2.08149	3.5053900000000002	4.92929	0.031124	0.0098607	0.143644	0.0838128
chr8	37873279	37873379	3935680	0	-	0.59	(0.57,1]	chr8	360562	1	SS3_PROX	SS3_PROX:INTRON	RAB11FIP1	ENSG00000156675.16	ENST00000330843.9:ENST00000287263.8:ENST00000522727.5:ENST00000524118.1	protein_coding	protein_coding	protein_coding	protein_coding	5	68	2	2.8972	3.50533	4.11346	6.94474e-5	1.70324e-5	0.00690574	0.00330681
chr7	107594043	107594105	3379042	0	+	0.290323	(0.28,0.32]	chr7	316453	1	CDS_START	CDS_START:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	DUS4L-BCAP29:BCAP29	ENSG00000288558.2:ENSG00000075790.12	ENST00000673689.1:ENST00000673720.1:ENST00000673780.1:ENST00000673709.1:ENST00000673970.1:ENST00000674049.1:ENST00000673992.1:ENST00000673665.1:ENST00000674062.1:ENST00000673784.1:ENST00000673757.1:ENST00000005259.9:ENST00000465919.5:ENST00000486326.5:ENST00000494086.5:ENST00000482371.5:ENST00000445771.6:ENST00000442065.5:ENST00000479917.5:ENST00000421217.5:ENST00000457837.5:ENST00000379117.6:ENST00000379119.6:ENST00000491150.5:ENST00000436699.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	48	2	1.96475	3.5052700000000003	5.04579	0.0428385	0.00714672	0.162255	0.0723634
chr9	92262232	92262332	4287012	0	-	0.42	(0.408,0.44]	chr9	394171	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	IARS1	ENSG00000196305.19	ENST00000375643.7:ENST00000443024.7:ENST00000447699.7:ENST00000683537.1:ENST00000684726.1:ENST00000683192.1:ENST00000683565.1:ENST00000682756.1:ENST00000684542.1:ENST00000683793.1:ENST00000683817.1:ENST00000682141.1:ENST00000682893.1:ENST00000684557.1:ENST00000498025.2:ENST00000682156.1:ENST00000627121.3:ENST00000683469.1:ENST00000683495.1:ENST00000682578.1:ENST00000682533.1:ENST00000472894.2:ENST00000684757.1:ENST00000684445.1:ENST00000683376.1:ENST00000683679.1:ENST00000683119.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	112	2	3.25157	3.505195	3.75882	4.04678e-4	4.51895e-5	0.0185763	0.00546706
chr9	130781153	130781253	4214536	0	+	0.35	(0.32,0.35]	chr9	386427	663	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000393293.4	protein_coding	protein_coding	protein_coding	protein_coding	2	50	2	1.77704	3.5051550000000002	5.23327	0.0719969	9.33826e-4	0.187322	0.0278746
chr19	5125016	5125116	7004996	0	+	0.52	(0.515,0.57]	chr19	694878	48	INTRON	INTRON	KDM4B	ENSG00000127663.15	ENST00000159111.9:ENST00000611640.4:ENST00000536461.5:ENST00000589104.5:ENST00000588361.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	40	2	2.08547	3.5051	4.92473	0.0289426	0.00108255	0.1274	0.0300133
chr1	167942035	167942134	248542	0	+	0.373737	(0.35,0.378]	chr1	29536	44	INTRON	INTRON	DCAF6	ENSG00000143164.16	ENST00000450548.5:ENST00000470919.5:ENST00000432587.6:ENST00000367843.7:ENST00000470721.5:ENST00000367840.4:ENST00000312263.10:ENST00000455334.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	79	2	1.35596	3.505065	5.65417	0.0404607	4.33402e-4	0.161534	0.0190829
chr8	123372136	123372235	4042394	0	-	0.333333	(0.32,0.35]	chr8	368775	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ATAD2	ENSG00000156802.13	ENST00000287394.10:ENST00000517666.5:ENST00000521903.5:ENST00000519124.5:ENST00000521496.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	50	2	1.88909	3.50504	5.12099	0.0553737	0.00143632	0.165463	0.0347139
chr1	51858213	51858313	455091	0	-	0.48	(0.476,0.515]	chr1	54627	173	INTRON	INTRON	NRDC	ENSG00000078618.23	ENST00000354831.11:ENST00000539524.5:ENST00000352171.12:ENST00000491410.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	31	2	2.56868	3.5049799999999998	4.44128	0.0256676	0.0151924	0.133676	0.0994339
chr10	68617320	68617420	4441457	0	+	0.48	(0.476,0.515]	chr10	409530	159	INTRON	INTRON	TET1	ENSG00000138336.9	ENST00000373644.5	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	2.56868	3.5049799999999998	4.44128	0.0256676	0.0151924	0.133676	0.0994339
chr13	20070742	20070842	5453580	0	+	0.5	(0.476,0.515]	chr13	522569	25	INTRON	INTRON	ZMYM2	ENSG00000121741.17	ENST00000382874.6:ENST00000610343.5:ENST00000382871.3:ENST00000382883.7:ENST00000382870.7:ENST00000494061.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	31	2	2.56868	3.5049799999999998	4.44128	0.0256676	0.0151924	0.133676	0.0994339
chr14	21390446	21390546	5835592	0	-	0.49	(0.476,0.515]	chr14	554614	1	SS5_PROX	SS5_PROX:INTRON	CHD8	ENSG00000100888.15	ENST00000430710.8:ENST00000646647.2:ENST00000645929.1:ENST00000645206.1:ENST00000557364.6:ENST00000643469.1:ENST00000553870.2:ENST00000555935.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	31	2	2.56868	3.5049799999999998	4.44128	0.0256676	0.0151924	0.133676	0.0994339
chr15	44326893	44326992	6013450	0	+	0.515152	(0.476,0.515]	chr15	572843	35	INTRON	INTRON	GOLM2	ENSG00000166734.20	ENST00000299957.11:ENST00000559222.5:ENST00000557945.5:ENST00000650436.1:ENST00000345795.6:ENST00000558735.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	31	2	2.56868	3.5049799999999998	4.44128	0.0256676	0.0151924	0.133676	0.0994339
chr16	53162935	53163035	6351803	0	+	0.48	(0.476,0.515]	chr16	609688	50	INTRON	INTRON	CHD9	ENSG00000177200.18	ENST00000447540.6:ENST00000566029.5:ENST00000615216.4:ENST00000565832.5:ENST00000564845.5:ENST00000398510.7:ENST00000564255.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	31	2	2.56868	3.5049799999999998	4.44128	0.0256676	0.0151924	0.133676	0.0994339
chr17	75795493	75795593	6676520	0	+	0.49	(0.476,0.515]	chr17	651915	14	INTRON	INTRON	UNK	ENSG00000132478.10	ENST00000589666.6:ENST00000592629.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	31	2	2.56868	3.5049799999999998	4.44128	0.0256676	0.0151924	0.133676	0.0994339
chr4	2845034	2845134	1915035	0	+	0.5	(0.476,0.515]	chr4	192244	2	SS5_PROX	SS5_PROX:INTRON	ADD1	ENSG00000087274.19	ENST00000683351.1:ENST00000398125.5:ENST00000264758.11:ENST00000508684.5:ENST00000510101.5:ENST00000511797.5:ENST00000539108.5:ENST00000513328.6:ENST00000509039.5:ENST00000508277.5:ENST00000503455.6:ENST00000540541.1:ENST00000355842.7:ENST00000651918.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	31	2	2.56868	3.5049799999999998	4.44128	0.0256676	0.0151924	0.133676	0.0994339
chr6	34381764	34381864	3084665	0	-	0.51	(0.476,0.515]	chr6	288633	394	INTRON	INTRON	NUDT3:RPS10-NUDT3	ENSG00000272325.2:ENSG00000270800.3	ENST00000607016.2:ENST00000639725.1:ENST00000639877.1:ENST00000605528.2	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	2.56868	3.5049799999999998	4.44128	0.0256676	0.0151924	0.133676	0.0994339
chr7	98350348	98350447	3581444	0	-	0.50505	(0.476,0.515]	chr7	333573	297	INTRON	INTRON	BAIAP2L1	ENSG00000006453.14	ENST00000005260.9:ENST00000462558.5:ENST00000473569.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	31	2	2.56868	3.5049799999999998	4.44128	0.0256676	0.0151924	0.133676	0.0994339
chr9	136824438	136824532	4221911	0	+	0.510638	(0.476,0.515]	chr9	387679	4	INTRON	INTRON	RABL6	ENSG00000196642.19	ENST00000371671.9:ENST00000311502.12:ENST00000484471.6:ENST00000371663.10:ENST00000357466.6:ENST00000464941.5:ENST00000629216.2:ENST00000436380.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	31	2	2.56868	3.5049799999999998	4.44128	0.0256676	0.0151924	0.133676	0.0994339
chr1	44216165	44216262	89747	0	+	0.412371	(0.408,0.44]	chr1	12113	14	EXON_LNCRNA	EXON_LNCRNA:INTRON	DMAP1	ENSG00000178028.14	ENST00000361745.10:ENST00000446292.5:ENST00000372289.7:ENST00000440641.5:ENST00000437511.5:ENST00000471829.5:ENST00000487922.5:ENST00000315913.9:ENST00000372290.4:ENST00000488433.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	50	2	1.93002	3.504925	5.07983	0.022095	0.00247652	0.123903	0.0446195
chr5	109813873	109813973	2450264	0	+	0.36	(0.35,0.378]	chr5	234656	92	INTRON	INTRON	MAN2A1	ENSG00000112893.10	ENST00000261483.5:ENST00000502261.5:ENST00000508043.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	53	2	2.02424	3.504925	4.98561	0.0164934	0.00474226	0.110301	0.0600445
chr1	11831257	11831355	25722	0	+	0.5	(0.476,0.515]	chr1	2861	6	INTRON	INTRON	CLCN6	ENSG00000011021.23	ENST00000312413.10:ENST00000346436.11:ENST00000400892.3:ENST00000376496.4:ENST00000494028.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	31	2	2.47949	3.5048600000000003	4.53023	0.0326974	0.0119748	0.145164	0.0899583
chr11	66948649	66948749	4970972	0	-	0.5	(0.476,0.515]	chr11	469042	2	SS3_PROX	SS3_PROX:INTRON	PC	ENSG00000173599.15	ENST00000529047.6:ENST00000393960.7:ENST00000393958.7:ENST00000651036.1:ENST00000651469.1:ENST00000652125.1:ENST00000651854.1:ENST00000528224.2:ENST00000525476.2:ENST00000528403.6:ENST00000524491.6:ENST00000531614.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	31	2	2.47949	3.5048600000000003	4.53023	0.0326974	0.0119748	0.145164	0.0899583
chr17	50395682	50395779	6795136	0	-	0.494845	(0.476,0.515]	chr17	670759	3	INTRON	INTRON	LRRC59	ENSG00000108829.10	ENST00000225972.8	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	2.47949	3.5048600000000003	4.53023	0.0326974	0.0119748	0.145164	0.0899583
chr17	67835405	67835505	6667800	0	+	0.48	(0.476,0.515]	chr17	650544	87	INTRON	INTRON	BPTF	ENSG00000171634.19	ENST00000306378.11:ENST00000544778.6:ENST00000321892.8:ENST00000342579.8:ENST00000644067.1:ENST00000424123.7	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	2.47949	3.5048600000000003	4.53023	0.0326974	0.0119748	0.145164	0.0899583
chr2	85608544	85608644	1169663	0	-	0.48	(0.476,0.515]	chr2	124703	34	UTR3	UTR3:EXON_MRNA	C2orf68	ENSG00000168887.11	ENST00000306336.6:ENST00000420686.5:ENST00000423181.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	31	2	2.47949	3.5048600000000003	4.53023	0.0326974	0.0119748	0.145164	0.0899583
chr5	103162508	103162607	2440474	0	+	0.484848	(0.476,0.515]	chr5	234268	28	INTRON	INTRON	PPIP5K2	ENSG00000145725.20	ENST00000321521.13:ENST00000358359.8:ENST00000613674.4:ENST00000414217.5:ENST00000627916.2	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	2.47949	3.5048600000000003	4.53023	0.0326974	0.0119748	0.145164	0.0899583
chr8	67092587	67092683	3776914	0	+	0.510417	(0.476,0.515]	chr8	350286	3	EXON_MRNA	EXON_MRNA:INTRON	CSPP1	ENSG00000104218.16	ENST00000676113.1:ENST00000675306.2:ENST00000678156.1:ENST00000262210.11:ENST00000678017.1:ENST00000675869.1:ENST00000678542.1:ENST00000677619.1:ENST00000676605.1:ENST00000676471.1:ENST00000677256.1:ENST00000676847.1:ENST00000677009.1:ENST00000675820.1:ENST00000676317.1:ENST00000677592.1:ENST00000676573.1:ENST00000678318.1:ENST00000677473.1:ENST00000674993.1:ENST00000678553.1:ENST00000678927.1:ENST00000678204.1:ENST00000679226.1:ENST00000676882.1:ENST00000675955.1:ENST00000678728.1:ENST00000677430.1:ENST00000677455.1:ENST00000678616.1:ENST00000678362.1:ENST00000679112.1:ENST00000678645.1:ENST00000676567.1:ENST00000677845.1:ENST00000519163.6:ENST00000676858.1:ENST00000678747.1:ENST00000678821.1:ENST00000678744.1:ENST00000519668.1:ENST00000677276.1:ENST00000676697.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	31	2	2.47949	3.5048600000000003	4.53023	0.0326974	0.0119748	0.145164	0.0899583
chr1	224006126	224006221	321060	0	+	0.4	(0.378,0.408]	chr1	36983	15	INTRON	INTRON	SEPTIN7P13	ENSG00000185495.10	ENST00000449219.2:ENST00000572124.2	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript	3	51	2	1.94559	3.504855	5.06412	0.0211434	0.0030522	0.122929	0.0493883
chr8	73970834	73970934	3972594	0	-	0.44	(0.408,0.44]	chr8	364300	2	SS3_PROX	SS3_PROX:INTRON	ELOC	ENSG00000154582.18	ENST00000602840.5:ENST00000518127.5:ENST00000520242.6:ENST00000687224.1:ENST00000622804.2:ENST00000685938.1:ENST00000520210.1:ENST00000284811.12:ENST00000519487.6:ENST00000522337.5:ENST00000523815.5:ENST00000519082.5	protein_coding	protein_coding	protein_coding	protein_coding	2	70	2	3.10641	3.50476	3.90311	0.00555646	1.24325e-4	0.0648867	0.00952291
chr9	97508484	97508584	4171656	0	+	0.4	(0.378,0.408]	chr9	380069	63	INTRON	INTRON	TMOD1	ENSG00000136842.14	ENST00000395211.6:ENST00000259365.9	protein_coding	protein_coding	protein_coding	protein_coding	3	51	2	1.78011	3.5046749999999998	5.22924	0.0356367	0.00172721	0.151629	0.0374701
chr8	25457585	25457669	3926344	0	-	0.571429	(0.57,1]	chr8	359467	3	EXON_LNCRNA	EXON_LNCRNA:INTRON	KCTD9	ENSG00000104756.16	ENST00000221200.9:ENST00000519665.5:ENST00000523140.5:ENST00000522493.5:ENST00000518067.5:ENST00000518997.5:ENST00000521458.5:ENST00000524217.1:ENST00000517914.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	37	2	1.95484	3.504665	5.05449	0.0113205	1.79828e-4	0.0948452	0.0121697
chr10	69133646	69133746	4444645	0	+	0.38	(0.378,0.408]	chr10	410023	2	INTRON	INTRON	VPS26A	ENSG00000122958.15	ENST00000373382.5:ENST00000395098.5:ENST00000489656.5:ENST00000263559.11:ENST00000497564.5:ENST00000490696.5:ENST00000467852.1:ENST00000489794.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	47	2	2.16303	3.50465	4.84627	0.0252473	0.00254319	0.12011	0.0465056
chr11	118451590	118451690	4872272	0	+	0.48	(0.476,0.515]	chr11	454987	17	INTRON	INTRON	ENSG00000285827:KMT2A	ENSG00000285827.1:ENSG00000118058.24	ENST00000648261.1:ENST00000389506.10:ENST00000534358.8:ENST00000533790.3:ENST00000527869.7:ENST00000649690.2:ENST00000691053.1:ENST00000531904.6:ENST00000649699.1:ENST00000648029.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	50	2	1.80284	3.504645	5.20645	0.033161	0.00136049	0.145899	0.0336321
chr16	8959976	8960076	6442719	0	-	0.45	(0.44,0.476]	chr16	620597	37	INTRON	INTRON	USP7	ENSG00000187555.16	ENST00000673704.1:ENST00000344836.9:ENST00000563961.5:ENST00000569230.5:ENST00000566273.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	34	2	2.67572	3.50459	4.33346	0.0212064	0.0120349	0.113017	0.0962115
chr2	135056190	135056290	872702	0	+	0.46	(0.44,0.476]	chr2	97722	4	SS3_PROX	SS3_PROX:INTRON	RAB3GAP1	ENSG00000115839.19	ENST00000539493.3:ENST00000688088.1:ENST00000693554.1:ENST00000690785.1:ENST00000689880.1:ENST00000264158.13:ENST00000686403.1:ENST00000690208.1:ENST00000691478.1:ENST00000686114.1:ENST00000685967.1:ENST00000442034.5:ENST00000425393.1:ENST00000687199.1:ENST00000691339.1:ENST00000688182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	34	2	2.67572	3.50459	4.33346	0.0212064	0.0120349	0.113017	0.0962115
chr12	115982064	115982159	5422562	0	-	0.252632	[0,0.28]	chr12	518169	9	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	MED13L	ENSG00000123066.9	ENST00000281928.9:ENST00000648379.1:ENST00000650226.1:ENST00000649607.1:ENST00000648737.1:ENST00000649775.1:ENST00000648825.1:ENST00000648916.1:ENST00000552340.1:ENST00000549786.2:ENST00000649146.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	52	2	2.00649	3.5045599999999997	5.00263	0.040391	0.013055	0.161534	0.093385
chr7	64341049	64341148	3319714	0	+	0.232323	[0,0.28]	chr7	308636	37	INTRON	INTRON	ZNF736	ENSG00000234444.10	ENST00000355095.8:ENST00000423484.3	protein_coding	protein_coding	protein_coding	protein_coding	2	52	2	2.00649	3.5045599999999997	5.00263	0.040391	0.013055	0.161534	0.093385
chr21	39254353	39254452	7464933	0	-	0.424242	(0.408,0.44]	chr21	760483	31	INTRON	INTRON	BRWD1	ENSG00000185658.14	ENST00000333229.6:ENST00000342449.8:ENST00000446924.5:ENST00000380800.7:ENST00000430093.5:ENST00000445245.5:ENST00000445668.5:ENST00000412604.1:ENST00000455867.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	71	2	1.71289	3.504505	5.29612	0.0135449	0.00113523	0.101363	0.0307488
chr22	19493627	19493726	7476973	0	+	0.565657	(0.515,0.57]	chr22	762407	93	INTRON	INTRON	CDC45	ENSG00000093009.11	ENST00000407835.6:ENST00000437685.6:ENST00000483431.5:ENST00000438587.6:ENST00000672837.1:ENST00000263201.7:ENST00000404724.7:ENST00000487669.5:ENST00000428937.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	32	2	2.96814	3.5045	4.04086	0.0197045	0.00756432	0.120063	0.0749063
chr12	96018462	96018562	5393772	0	-	0.53	(0.515,0.57]	chr12	514300	3	SS5_PROX	SS5_PROX:INTRON	LTA4H	ENSG00000111144.10	ENST00000228740.7:ENST00000552789.5:ENST00000553041.5:ENST00000413268.6:ENST00000548852.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	30	2	2.23915	3.5044950000000004	4.76984	0.0596178	0.00198034	0.16883600000000001	0.0411469
chr16	58175010	58175109	6494958	0	-	0.414141	(0.408,0.44]	chr16	628344	1	INTRON	INTRON	CSNK2A2	ENSG00000070770.10	ENST00000262506.8:ENST00000565188.2:ENST00000566813.5:ENST00000677823.1:ENST00000567730.6:ENST00000563307.2:ENST00000562367.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	31	2	2.58179	3.50446	4.42713	0.024638	0.0173083	0.131869	0.104099
chr19	212772	212869	7108820	0	-	0.412371	(0.408,0.44]	chr19	713694	5	INTRON	INTRON	LINC01002	ENSG00000282508.2	ENST00000631644.1:ENST00000632624.2:ENST00000633109.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	1	31	2	2.58179	3.50446	4.42713	0.024638	0.0173083	0.131869	0.104099
chr2	8826013	8826113	1061920	0	-	0.43	(0.408,0.44]	chr2	113289	1	SS3_PROX	SS3_PROX:INTRON	KIDINS220	ENSG00000134313.17	ENST00000569008.2:ENST00000689369.1:ENST00000693394.1:ENST00000689852.1:ENST00000693432.1:ENST00000256707.8:ENST00000687912.1:ENST00000685097.1:ENST00000473731.5:ENST00000687894.1:ENST00000691030.1:ENST00000686906.1:ENST00000488729.5:ENST00000489024.5:ENST00000459813.2:ENST00000692419.1:ENST00000689531.1:ENST00000686179.1:ENST00000692889.1:ENST00000687240.1:ENST00000690607.1:ENST00000319688.5:ENST00000689114.1:ENST00000685274.1:ENST00000693366.1:ENST00000693249.1:ENST00000687526.1:ENST00000685083.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	31	2	2.58179	3.50446	4.42713	0.024638	0.0173083	0.131869	0.104099
chr7	155702086	155702185	3452476	0	+	0.424242	(0.408,0.44]	chr7	322678	7	INTRON	INTRON	RBM33	ENSG00000184863.11	ENST00000401878.8:ENST00000307403.6:ENST00000440108.5:ENST00000392761.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	31	2	2.58179	3.50446	4.42713	0.024638	0.0173083	0.131869	0.104099
chr11	94970175	94970255	5018659	0	-	0.325	(0.32,0.35]	chr11	473470	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	CWC15	ENSG00000150316.12	ENST00000279839.8:ENST00000616442.4:ENST00000621358.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	34	2	2.64129	3.5044199999999996	4.36755	0.0300552	0.0222819	0.129138	0.124303
chr15	41092482	41092582	6152998	0	-	0.35	(0.32,0.35]	chr15	585416	3	SS3_PROX	SS3_PROX:INTRON	INO80	ENSG00000128908.18	ENST00000648947.1:ENST00000401393.7:ENST00000558357.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	34	2	2.64129	3.5044199999999996	4.36755	0.0300552	0.0222819	0.129138	0.124303
chr19	5971472	5971571	7125543	0	-	0.343434	(0.32,0.35]	chr19	717384	52	INTRON	INTRON	RANBP3	ENSG00000031823.14	ENST00000340578.10:ENST00000439268.6:ENST00000592771.5:ENST00000591092.5:ENST00000034275.12:ENST00000587479.2:ENST00000592621.5:ENST00000590623.5:ENST00000591736.5:ENST00000590953.5:ENST00000588879.5:ENST00000587159.5:ENST00000586117.5:ENST00000589353.5:ENST00000587463.5:ENST00000588010.5:ENST00000591124.5:ENST00000585339.5:ENST00000592133.5:ENST00000591881.5:ENST00000589886.5:ENST00000587263.5:ENST00000587956.5:ENST00000591333.5:ENST00000592266.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	34	2	2.64129	3.5044199999999996	4.36755	0.0300552	0.0222819	0.129138	0.124303
chr2	47165400	47165498	1114782	0	-	0.326531	(0.32,0.35]	chr2	119559	13	INTRON	INTRON	CALM2	ENSG00000143933.20	ENST00000272298.12:ENST00000652974.1:ENST00000460218.5:ENST00000655450.1:ENST00000432899.5:ENST00000456319.6:ENST00000656538.1:ENST00000668667.1:ENST00000655728.1:ENST00000409563.5:ENST00000484408.5:ENST00000489742.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	34	2	2.64129	3.5044199999999996	4.36755	0.0300552	0.0222819	0.129138	0.124303
chr4	106313352	106313451	2221611	0	-	0.333333	(0.32,0.35]	chr4	217575	29	INTRON	INTRON	TBCK	ENSG00000145348.17	ENST00000273980.10:ENST00000394708.7:ENST00000361687.8:ENST00000394706.7:ENST00000467183.6:ENST00000509532.5:ENST00000507696.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	34	2	2.64129	3.5044199999999996	4.36755	0.0300552	0.0222819	0.129138	0.124303
chr4	159113920	159114020	2073608	0	+	0.35	(0.32,0.35]	chr4	205172	93	INTRON	INTRON	RAPGEF2	ENSG00000109756.10	ENST00000644474.1:ENST00000691494.1:ENST00000505478.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	34	2	2.64129	3.5044199999999996	4.36755	0.0300552	0.0222819	0.129138	0.124303
chr5	141554556	141554656	2739513	0	-	0.33	(0.32,0.35]	chr5	258065	198	INTRON	INTRON	DIAPH1	ENSG00000131504.18	ENST00000647433.1:ENST00000389054.8:ENST00000518047.5:ENST00000491754.5:ENST00000518484.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	34	2	2.64129	3.5044199999999996	4.36755	0.0300552	0.0222819	0.129138	0.124303
chr9	136824252	136824345	4221909	0	+	0.322581	(0.32,0.35]	chr9	387679	2	INTRON	INTRON	RABL6	ENSG00000196642.19	ENST00000371671.9:ENST00000311502.12:ENST00000484471.6:ENST00000371663.10:ENST00000357466.6:ENST00000464941.5:ENST00000629216.2:ENST00000436380.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	34	2	2.64129	3.5044199999999996	4.36755	0.0300552	0.0222819	0.129138	0.124303
chrX	53653562	53653662	7821576	0	-	0.33	(0.32,0.35]	chrX	798228	1	SS5_PROX	SS5_PROX:INTRON	HUWE1	ENSG00000086758.16	ENST00000262854.11:ENST00000342160.7:ENST00000612484.4:ENST00000218328.12:ENST00000446750.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	34	2	2.64129	3.5044199999999996	4.36755	0.0300552	0.0222819	0.129138	0.124303
chrX	111749195	111749295	7702734	0	+	0.34	(0.32,0.35]	chrX	788360	39	INTRON	INTRON	ALG13	ENSG00000101901.12	ENST00000394780.8:ENST00000251943.8:ENST00000610588.4:ENST00000621367.4:ENST00000624161.3:ENST00000636363.1:ENST00000495283.5:ENST00000623144.3:ENST00000470971.5:ENST00000623148.3:ENST00000436609.5:ENST00000461669.5:ENST00000474121.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	34	2	2.64129	3.5044199999999996	4.36755	0.0300552	0.0222819	0.129138	0.124303
chr1	24756813	24756913	46175	0	+	0.44	(0.408,0.44]	chr1	5764	108	INTRON	INTRON	CLIC4	ENSG00000169504.15	ENST00000488683.1:ENST00000497755.1:ENST00000489758.1:ENST00000374379.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	31	2	2.49258	3.5043100000000003	4.51604	0.0314608	0.0137419	0.144381	0.0949306
chr10	73147043	73147135	4648073	0	-	0.423913	(0.408,0.44]	chr10	427613	3	INTRON	INTRON	ECD	ENSG00000122882.11	ENST00000372979.9:ENST00000454759.6:ENST00000484976.6:ENST00000430082.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	31	2	2.49258	3.5043100000000003	4.51604	0.0314608	0.0137419	0.144381	0.0949306
chr12	27030855	27030954	5097779	0	+	0.414141	(0.408,0.44]	chr12	481665	2	INTRON	INTRON	MED21	ENSG00000152944.9	ENST00000538186.5	protein_coding	processed_transcript	protein_coding	processed_transcript	1	31	2	2.49258	3.5043100000000003	4.51604	0.0314608	0.0137419	0.144381	0.0949306
chr12	54331746	54331845	5143763	0	+	0.424242	(0.408,0.44]	chr12	485588	57	INTRON	INTRON	COPZ1	ENSG00000111481.10	ENST00000552848.5:ENST00000548076.5:ENST00000553009.5:ENST00000549043.5:ENST00000262061.7:ENST00000552218.5:ENST00000551962.5:ENST00000550171.5:ENST00000455864.6:ENST00000552362.5:ENST00000553231.5:ENST00000550027.5:ENST00000551412.5:ENST00000549116.5:ENST00000551779.5:ENST00000548281.5:ENST00000548753.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	31	2	2.49258	3.5043100000000003	4.51604	0.0314608	0.0137419	0.144381	0.0949306
chr14	75059148	75059248	5923692	0	-	0.42	(0.408,0.44]	chr14	562992	51	INTRON	INTRON	ACYP1	ENSG00000119640.9	ENST00000555463.1:ENST00000555694.5:ENST00000238618.8:ENST00000357971.7	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	2.49258	3.5043100000000003	4.51604	0.0314608	0.0137419	0.144381	0.0949306
chr17	57311825	57311925	6633307	0	+	0.44	(0.408,0.44]	chr17	648024	11	INTRON	INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000581776.5:ENST00000674961.1:ENST00000582453.5:ENST00000675656.1:ENST00000322684.7:ENST00000579590.5:ENST00000676073.1:ENST00000675822.1:ENST00000442934.6:ENST00000579180.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	31	2	2.49258	3.5043100000000003	4.51604	0.0314608	0.0137419	0.144381	0.0949306
chr19	27806267	27806362	7044982	0	+	0.410526	(0.408,0.44]	chr19	702443	8	EXON_LNCRNA	EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ENSG00000267575	ENSG00000267575.8	ENST00000666789.1:ENST00000585917.6:ENST00000686618.1:ENST00000653426.1:ENST00000689394.1:ENST00000667196.1:ENST00000659857.2:ENST00000655543.1:ENST00000670399.1:ENST00000667566.1:ENST00000588122.5:ENST00000693578.1:ENST00000685134.1:ENST00000656827.1:ENST00000592806.1:ENST00000590628.1:ENST00000669503.1:ENST00000669909.1:ENST00000664065.1:ENST00000663452.2:ENST00000668903.1:ENST00000692210.1:ENST00000591549.1:ENST00000692520.1:ENST00000660309.1	lncRNA	lncRNA	lncRNA	lncRNA	1	31	2	2.49258	3.5043100000000003	4.51604	0.0314608	0.0137419	0.144381	0.0949306
chr3	125249527	125249627	1805842	0	-	0.41	(0.408,0.44]	chr3	181414	148	INTRON	INTRON	ZNF148	ENSG00000163848.20	ENST00000360647.9:ENST00000468369.5:ENST00000484491.5:ENST00000492394.5:ENST00000485866.5:ENST00000497929.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	31	2	2.49258	3.5043100000000003	4.51604	0.0314608	0.0137419	0.144381	0.0949306
chr3	141971609	141971706	1833650	0	-	0.43299	(0.408,0.44]	chr3	184292	11	INTRON	INTRON	TFDP2	ENSG00000114126.18	ENST00000489671.6:ENST00000499676.5:ENST00000486111.5:ENST00000477292.5:ENST00000495310.5:ENST00000467072.5:ENST00000487734.5:ENST00000479040.5:ENST00000467667.5:ENST00000478006.5:ENST00000497579.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	31	2	2.49258	3.5043100000000003	4.51604	0.0314608	0.0137419	0.144381	0.0949306
chr4	924348	924448	2094219	0	-	0.43	(0.408,0.44]	chr4	206992	87	INTRON	INTRON	GAK	ENSG00000178950.18	ENST00000314167.9:ENST00000511163.5:ENST00000505819.5:ENST00000507580.5:ENST00000502656.5:ENST00000512325.3:ENST00000628912.1:ENST00000513935.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	31	2	2.49258	3.5043100000000003	4.51604	0.0314608	0.0137419	0.144381	0.0949306
chr4	185285714	185285814	2088139	0	+	0.44	(0.408,0.44]	chr4	206438	182	INTRON	INTRON	SNX25	ENSG00000109762.17	ENST00000504273.5:ENST00000618785.4:ENST00000652585.2:ENST00000264694.13	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	2.49258	3.5043100000000003	4.51604	0.0314608	0.0137419	0.144381	0.0949306
chr5	119170585	119170684	2460788	0	+	0.434343	(0.408,0.44]	chr5	235721	5	CDS	CDS:EXON_MRNA	DMXL1	ENSG00000172869.15	ENST00000539542.6:ENST00000311085.8	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	2.49258	3.5043100000000003	4.51604	0.0314608	0.0137419	0.144381	0.0949306
chr8	116700235	116700334	4033671	0	-	0.414141	(0.408,0.44]	chr8	368058	26	INTRON	INTRON	EIF3H	ENSG00000147677.12	ENST00000521861.6:ENST00000276682.8:ENST00000518949.5:ENST00000518995.5:ENST00000522800.5:ENST00000518034.5:ENST00000517974.1:ENST00000522453.1:ENST00000519046.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	31	2	2.49258	3.5043100000000003	4.51604	0.0314608	0.0137419	0.144381	0.0949306
chr8	127907122	127907222	3861183	0	+	0.44	(0.408,0.44]	chr8	355442	42	INTRON	INTRON	PVT1	ENSG00000249859.13	ENST00000667305.1:ENST00000690350.1:ENST00000653522.1:ENST00000664214.1:ENST00000664139.1:ENST00000661830.1:ENST00000657289.1:ENST00000504719.7:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000656880.1:ENST00000660200.1:ENST00000669132.1:ENST00000657211.1:ENST00000653845.1:ENST00000517525.2:ENST00000665856.1:ENST00000651587.1:ENST00000692980.1:ENST00000666353.1:ENST00000657183.1:ENST00000654324.1:ENST00000658556.1:ENST00000657693.1:ENST00000666080.1:ENST00000667539.1:ENST00000521951.1:ENST00000524165.6:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000664293.1:ENST00000657297.1:ENST00000662410.1:ENST00000670795.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000654091.1:ENST00000523328.6:ENST00000657356.1:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000662061.1:ENST00000667204.1:ENST00000656491.1:ENST00000667714.1:ENST00000654105.1:ENST00000665721.1:ENST00000518528.2:ENST00000669416.1:ENST00000660438.1:ENST00000661160.1:ENST00000659326.1:ENST00000665246.1:ENST00000657384.1:ENST00000666842.1:ENST00000517790.2:ENST00000522963.6:ENST00000654369.1:ENST00000661625.1:ENST00000657596.1:ENST00000664995.1:ENST00000656532.1:ENST00000661988.1:ENST00000670714.1:ENST00000669951.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000656693.1:ENST00000668123.1:ENST00000666776.1:ENST00000664299.1:ENST00000669272.1:ENST00000659912.1:ENST00000670532.1:ENST00000660896.1:ENST00000667149.1:ENST00000656396.1:ENST00000523068.2:ENST00000521122.2:ENST00000520913.2:ENST00000519481.6:ENST00000651568.1:ENST00000669082.1:ENST00000665166.1:ENST00000656948.1:ENST00000671088.1:ENST00000664924.1:ENST00000670204.1:ENST00000652695.1:ENST00000670602.1:ENST00000651664.1:ENST00000517838.6:ENST00000663461.1:ENST00000513868.6:ENST00000670626.1:ENST00000653406.1	lncRNA	lncRNA	lncRNA	lncRNA	1	31	2	2.49258	3.5043100000000003	4.51604	0.0314608	0.0137419	0.144381	0.0949306
chrX	48462594	48462692	7815381	0	-	0.418367	(0.408,0.44]	chrX	796675	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SLC38A5	ENSG00000017483.16	ENST00000595796.5:ENST00000619100.4:ENST00000620913.5:ENST00000497336.1:ENST00000494034.5:ENST00000440085.5:ENST00000441948.5:ENST00000413668.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	31	2	2.49258	3.5043100000000003	4.51604	0.0314608	0.0137419	0.144381	0.0949306
chr7	102368563	102368663	3371120	0	+	0.45	(0.44,0.476]	chr7	315430	21	INTRON	INTRON	PRKRIP1:ENSG00000239969	ENSG00000128563.13:ENSG00000239969.6	ENST00000477886.5:ENST00000469763.5:ENST00000482549.5:ENST00000496391.5:ENST00000484974.5:ENST00000492837.1:ENST00000482465.5	protein_coding	protein_coding	protein_coding:transcribed_unprocessed_pseudogene	protein_coding:processed_transcript	3	51	2	2.1762	3.50411	4.83202	0.0092251	0.00525002	0.0855292	0.0633615
chr7	105300766	105300866	3603023	0	-	0.35	(0.32,0.35]	chr7	336154	21	INTRON	INTRON	SRPK2	ENSG00000135250.17	ENST00000393651.8:ENST00000482897.5:ENST00000460391.5:ENST00000462282.5:ENST00000465112.5:ENST00000482862.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	63	2	1.49965	3.50409	5.50853	0.0542985	0.0010959399999999999	0.182243	0.0304174
chr5	10366034	10366134	2317770	0	+	0.46	(0.44,0.476]	chr5	224612	110	INTRON	INTRON	MARCHF6	ENSG00000145495.16	ENST00000274140.10:ENST00000449913.6:ENST00000502795.5:ENST00000511802.5:ENST00000503788.5:ENST00000640713.1:ENST00000510872.5:ENST00000507863.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	50	2	1.75627	3.5040299999999998	5.25179	0.0380723	0.00124521	0.157702	0.0322969
chr7	5922014	5922111	3272813	0	+	0.515464	(0.515,0.57]	chr7	304246	17	INTRON	INTRON	CCZ1	ENSG00000122674.12	ENST00000325974.9:ENST00000628813.2:ENST00000474507.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	46	2	2.17039	3.504015	4.83764	0.00900252	0.00279527	0.0851009	0.0469265
chr19	32456520	32456618	7049282	0	+	0.520408	(0.515,0.57]	chr19	702858	11	INTRON	INTRON	DPY19L3	ENSG00000178904.19	ENST00000392250.7:ENST00000586987.5:ENST00000342179.9:ENST00000585597.5:ENST00000588648.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	30	2	2.60899	3.5039949999999997	4.399	0.0232669	0.00708863	0.118148	0.0754923
chr21	9341220	9341319	7367544	0	+	0.555556	(0.515,0.57]	chr21	751926	96	INTRON	INTRON	ENSG00000278932	ENSG00000278932.5	ENST00000622961.3:ENST00000686553.1:ENST00000691955.1:ENST00000625153.3:ENST00000692626.1:ENST00000685951.1:ENST00000686510.1:ENST00000692884.1	lncRNA	lncRNA	lncRNA	lncRNA	1	30	2	2.60899	3.5039949999999997	4.399	0.0232669	0.00708863	0.118148	0.0754923
chr22	41309264	41309364	7522780	0	+	0.55	(0.515,0.57]	chr22	768798	71	INTRON	INTRON	ZC3H7B	ENSG00000100403.12	ENST00000352645.5:ENST00000486331.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	30	2	2.60899	3.5039949999999997	4.399	0.0232669	0.00708863	0.118148	0.0754923
chr6	89832538	89832638	2916470	0	+	0.55	(0.515,0.57]	chr6	275600	8	INTRON	INTRON	CASP8AP2	ENSG00000118412.13	ENST00000552401.5:ENST00000419040.6:ENST00000547893.5:ENST00000237177.10:ENST00000551025.4:ENST00000548224.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	30	2	2.60899	3.5039949999999997	4.399	0.0232669	0.00708863	0.118148	0.0754923
chr2	107709511	107709611	1205644	0	-	0.28	[0,0.28]	chr2	128526	58	INTRON	INTRON	LINC01885:ENSG00000286769	ENSG00000237880.2:ENSG00000286769.1	ENST00000654481.1:ENST00000669817.1	lncRNA	lncRNA	lncRNA	lncRNA	5	181	2	2.6981	3.503965	4.30983	6.83381e-4	9.91322e-5	0.0238018	0.00901267
chr1	213074852	213074950	310938	0	+	0.479592	(0.476,0.515]	chr1	35913	15	INTRON	INTRON	RPS6KC1	ENSG00000136643.12	ENST00000615329.4:ENST00000543354.5:ENST00000614059.4:ENST00000543470.5:ENST00000366960.8:ENST00000366959.4:ENST00000490299.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	58	2	1.91368	3.503955	5.09423	0.0135123	0.00204588	0.101363	0.04086
chr5	138791143	138791243	2497687	0	+	0.35	(0.32,0.35]	chr5	238724	1	SS5_PROX	SS5_PROX:INTRON	CTNNA1	ENSG00000044115.21	ENST00000517980.5:ENST00000522227.5:ENST00000523912.5:ENST00000627109.2:ENST00000521724.5:ENST00000302763.12:ENST00000518910.5:ENST00000519309.5:ENST00000519113.5:ENST00000520158.5:ENST00000518825.5:ENST00000518585.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	34	2	2.31405	3.503925	4.6938	0.0517107	0.0137794	0.176696	0.0949306
chr6	45247755	45247855	3102684	0	-	0.33	(0.32,0.35]	chr6	290476	1414	INTRON	INTRON	SUPT3H	ENSG00000196284.17	ENST00000475057.5:ENST00000371459.6:ENST00000371460.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	34	2	2.31405	3.503925	4.6938	0.0517107	0.0137794	0.176696	0.0949306
chr7	133412409	133412509	3419762	0	+	0.33	(0.32,0.35]	chr7	319348	156	INTRON	INTRON	EXOC4	ENSG00000131558.15	ENST00000486013.5:ENST00000393161.6:ENST00000253861.5:ENST00000462055.5:ENST00000486409.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	34	2	2.31405	3.503925	4.6938	0.0517107	0.0137794	0.176696	0.0949306
chr9	77933641	77933741	4270966	0	-	0.33	(0.32,0.35]	chr9	392880	109	INTRON	INTRON	GNAQ	ENSG00000156052.11	ENST00000286548.9:ENST00000411677.1	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	2.31405	3.503925	4.6938	0.0517107	0.0137794	0.176696	0.0949306
chr14	30683528	30683627	5675672	0	+	0.606061	(0.57,1]	chr14	540720	63	INTRON	INTRON	SCFD1	ENSG00000092108.22	ENST00000678760.1:ENST00000677690.1:ENST00000678124.1:ENST00000678716.1:ENST00000678402.1:ENST00000679153.1:ENST00000678516.1:ENST00000678802.1:ENST00000679096.1:ENST00000679102.1:ENST00000678475.1:ENST00000676509.1:ENST00000676750.1:ENST00000679165.1:ENST00000676658.1:ENST00000678399.1:ENST00000678185.1:ENST00000677027.1:ENST00000678006.1:ENST00000677413.1:ENST00000555259.5:ENST00000554437.6:ENST00000676834.1:ENST00000678858.1:ENST00000553693.6:ENST00000676914.1:ENST00000676465.1:ENST00000676812.1:ENST00000678669.1:ENST00000676520.1:ENST00000676876.1:ENST00000677617.1:ENST00000676954.1:ENST00000677456.1:ENST00000678735.1:ENST00000679342.1:ENST00000678637.1:ENST00000677176.1:ENST00000557076.6:ENST00000677637.1:ENST00000677974.1:ENST00000458591.7:ENST00000484733.6:ENST00000556768.5:ENST00000544052.6:ENST00000463622.6:ENST00000676674.1:ENST00000677340.1:ENST00000311943.11:ENST00000679075.1:ENST00000678396.1:ENST00000676473.1:ENST00000396629.6:ENST00000678579.1:ENST00000678104.1:ENST00000554819.5:ENST00000554486.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	28	2	2.13445	3.50389	4.87333	0.0241482	3.21412e-4	0.12011	0.0159645
chr1	235128294	235128394	661834	0	-	0.49	(0.476,0.515]	chr1	78342	3	SS5_PROX	SS5_PROX:INTRON	TOMM20	ENSG00000173726.11	ENST00000366607.5	protein_coding	protein_coding	protein_coding	protein_coding	18	448	2	2.97829	3.50378	4.02927	9.01462e-7	4.53628e-8	5.37877e-4	8.46643e-5
chr18	2556229	2556328	6942469	0	-	0.40404	(0.378,0.408]	chr18	686663	8	INTRON	INTRON	METTL4	ENSG00000101574.15	ENST00000319888.10:ENST00000574538.2:ENST00000573134.1:ENST00000577166.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	73	2	3.00568	3.5036899999999997	4.0017	0.00811866	7.73853e-5	0.0766625	0.00735438
chr1	174992490	174992590	265495	0	+	0.34	(0.32,0.35]	chr1	30971	26	UTR3	UTR3:EXON_MRNA:INTRON	RABGAP1L	ENSG00000152061.24	ENST00000681986.1:ENST00000489615.5:ENST00000392064.6:ENST00000485114.1	protein_coding	protein_coding	protein_coding	protein_coding	3	61	2	1.77409	3.50368	5.23327	0.0414296	9.33826e-4	0.146067	0.0278746
chr12	120894285	120894385	5435807	0	-	0.35	(0.32,0.35]	chr12	519663	588	INTRON	INTRON	SPPL3	ENSG00000157837.16	ENST00000353487.7:ENST00000536996.5:ENST00000543608.5:ENST00000543854.5	protein_coding	protein_coding	protein_coding	protein_coding	3	61	2	1.77409	3.50368	5.23327	0.0414296	9.33826e-4	0.146067	0.0278746
chr3	160404685	160404764	1544647	0	+	0.367089	(0.35,0.378]	chr3	160688	1	SS5_PROX	SS5_PROX:PRIMIRNA:INTRON	SMC4:MIR15B	ENSG00000113810.16:ENSG00000207779.1	ENST00000472282.5:ENST00000472991.5:ENST00000357388.8:ENST00000469762.5:ENST00000468653.5:ENST00000467468.5:ENST00000469858.5:ENST00000489573.5:ENST00000462787.5:ENST00000344722.5:ENST00000470240.5:ENST00000497984.5:ENST00000385045.1:ENST00000487747.5	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript:primary_miRNA	2	44	2	2.2877	3.503615	4.71953	0.0155765	0.0103314	0.109411	0.0850389
chr7	16601792	16601879	3494580	0	-	0.367816	(0.35,0.378]	chr7	326287	5	INTRON	INTRON	ANKMY2	ENSG00000106524.9	ENST00000306999.7:ENST00000447802.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	44	2	2.2877	3.503615	4.71953	0.0155765	0.0103314	0.109411	0.0850389
chr11	70280675	70280774	4820510	0	+	0.444444	(0.44,0.476]	chr11	449381	79	INTRON	INTRON	PPFIA1	ENSG00000131626.19	ENST00000253925.12:ENST00000389547.7:ENST00000532504.5:ENST00000530746.1:ENST00000532024.1:ENST00000648755.1:ENST00000644155.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	54	2	1.7651	3.5036050000000003	5.24211	0.039388	4.87398e-4	0.143072	0.0199652
chr17	66322608	66322708	6662497	0	+	0.44	(0.408,0.44]	chr17	650320	161	INTRON	INTRON	PRKCA	ENSG00000154229.12	ENST00000413366.8:ENST00000578063.5:ENST00000583361.1:ENST00000284384.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	69	2	3.41144	3.50354	3.59564	0.00178336	5.73354e-4	0.0379201	0.0217398
chr2	151450122	151450220	893627	0	+	0.428571	(0.408,0.44]	chr2	98976	32	INTRON	INTRON	RIF1	ENSG00000080345.18	ENST00000453091.6:ENST00000428287.6:ENST00000444746.7:ENST00000243326.9:ENST00000414861.6:ENST00000430328.6	protein_coding	protein_coding	protein_coding	protein_coding	2	69	2	3.41144	3.50354	3.59564	0.00178336	5.73354e-4	0.0379201	0.0217398
chr10	17692821	17692921	4399758	0	+	0.3	(0.28,0.32]	chr10	406181	2	SS3_PROX	SS3_PROX:INTRON	STAM	ENSG00000136738.15	ENST00000377524.8:ENST00000377500.1:ENST00000445846.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	38	2	2.97333	3.50339	4.03345	0.0704058	0.00857834	0.184298	0.083729
chr1	167961239	167961339	248735	0	+	0.54	(0.515,0.57]	chr1	29542	90	INTRON	INTRON	DCAF6	ENSG00000143164.16	ENST00000450548.5:ENST00000470919.5:ENST00000432587.6:ENST00000367843.7:ENST00000470721.5:ENST00000367840.4:ENST00000312263.10:ENST00000455334.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	79	2	3.12673	3.50338	3.88003	3.95089e-4	1.52864e-4	0.0178567	0.0112857
chr12	45840082	45840180	5123830	0	+	0.387755	(0.378,0.408]	chr12	483344	7	EXON_MRNA	EXON_MRNA:INTRON	ARID2	ENSG00000189079.17	ENST00000334344.11:ENST00000422737.6:ENST00000479608.5:ENST00000480128.1:ENST00000444670.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	72	2	3.10274	3.5032249999999996	3.90371	0.00586642	1.30398e-4	0.0668095	0.00983066
chr20	49079219	49079317	7284128	0	+	0.397959	(0.378,0.408]	chr20	740884	2	INTRON	INTRON	CSE1L	ENSG00000124207.17	ENST00000396192.7:ENST00000262982.3	protein_coding	protein_coding	protein_coding	protein_coding	2	73	2	3.33026	3.5031749999999997	3.67609	0.00189824	6.32264e-4	0.0402736	0.0231174
chr1	47336614	47336714	97602	0	+	0.49	(0.476,0.515]	chr1	13138	21	INTRON	INTRON	CMPK1	ENSG00000162368.14	ENST00000371873.10:ENST00000371871.8:ENST00000471289.2:ENST00000450808.2:ENST00000371870.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	69	2	3.40003	3.5031499999999998	3.60627	0.00139193	7.49088e-4	0.0341261	0.0251179
chr12	11037969	11038069	5268170	0	-	0.44	(0.408,0.44]	chr12	502239	27	INTRON	INTRON	ENSG00000275778:PRH1	ENSG00000275778.2:ENSG00000231887.8	ENST00000536668.2:ENST00000535024.6:ENST00000539853.5:ENST00000541977.5:ENST00000536086.2:ENST00000534923.1:ENST00000541456.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	45	2	1.88062	3.5031499999999998	5.12568	0.0534548	7.90919e-4	0.162935	0.0258324
chr17	51115758	51115858	6796967	0	-	0.44	(0.408,0.44]	chr17	671024	357	INTRON	INTRON	SPAG9	ENSG00000008294.22	ENST00000262013.12:ENST00000505279.5:ENST00000357122.8	protein_coding	protein_coding	protein_coding	protein_coding	2	45	2	1.88062	3.5031499999999998	5.12568	0.0534548	7.90919e-4	0.162935	0.0258324
chr3	134241127	134241227	1823568	0	-	0.44	(0.408,0.44]	chr3	183484	182	INTRON	INTRON	RYK	ENSG00000163785.13	ENST00000623711.4:ENST00000460933.5:ENST00000620660.4	protein_coding	protein_coding	protein_coding	protein_coding	2	45	2	1.94273	3.50308	5.06343	0.0456237	0.00101725	0.149888	0.0293497
chr4	4442605	4442705	2101328	0	-	0.44	(0.408,0.44]	chr4	208129	37	INTRON	INTRON	STX18	ENSG00000168818.10	ENST00000505286.5:ENST00000306200.7:ENST00000503861.5:ENST00000512195.5:ENST00000507908.5:ENST00000512780.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	45	2	1.94273	3.50308	5.06343	0.0456237	0.00101725	0.149888	0.0293497
chr7	32890476	32890576	3515611	0	-	0.42	(0.408,0.44]	chr7	327783	1	SS5_PROX	SS5_PROX:INTRON	KBTBD2	ENSG00000170852.12	ENST00000304056.9:ENST00000485611.5:ENST00000452926.1:ENST00000453627.1:ENST00000423022.1:ENST00000424468.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	45	2	1.94273	3.50308	5.06343	0.0456237	0.00101725	0.149888	0.0293497
chr5	104207287	104207387	2442488	0	+	0.39	(0.378,0.408]	chr5	234410	1020	INTRON	INTRON	LINC02163	ENSG00000251026.2	ENST00000662211.1:ENST00000666145.1	lncRNA	lncRNA	lncRNA	lncRNA	4	114	2	2.87389	3.502955	4.13202	4.01435e-4	7.35047e-5	0.0179994	0.00767614
chr16	87339914	87340013	6537383	0	-	0.464646	(0.44,0.476]	chr16	633394	33	INTRON	INTRON	FBXO31	ENSG00000103264.18	ENST00000311635.12:ENST00000565593.1:ENST00000618298.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	69	2	3.45957	3.502945	3.54632	0.00106385	9.9951e-4	0.0300133	0.0288906
chr16	20788420	20788518	6317841	0	+	0.387755	(0.378,0.408]	chr16	604645	19	INTRON	INTRON	ACSM3	ENSG00000005187.12	ENST00000289416.10:ENST00000562251.5:ENST00000567387.5:ENST00000569141.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	72	2	3.4275	3.5028550000000003	3.57821	0.00126053	9.60401e-4	0.03295	0.0282401
chr19	58244921	58245012	7106686	0	+	0.43956	(0.408,0.44]	chr19	713320	5	INTRON	INTRON	ZNF544	ENSG00000198131.15	ENST00000599227.5:ENST00000687789.1:ENST00000594384.5:ENST00000597240.5:ENST00000596597.5:ENST00000652201.1:ENST00000596825.5:ENST00000596929.5:ENST00000596677.5:ENST00000600220.5:ENST00000600044.5:ENST00000596652.5:ENST00000599953.1:ENST00000598880.5:ENST00000600775.5:ENST00000595981.5:ENST00000627781.2:ENST00000269829.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	35	2	2.78122	3.5028449999999998	4.22447	0.0161655	0.015812	0.109464	0.101453
chr4	2559936	2560036	1912749	0	+	0.44	(0.408,0.44]	chr4	191976	224	INTRON	INTRON	RNF4:FAM193A	ENSG00000063978.16:ENSG00000125386.16	ENST00000508235.1:ENST00000637812.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	35	2	2.78122	3.5028449999999998	4.22447	0.0161655	0.015812	0.109464	0.101453
chr14	101792661	101792759	5818806	0	+	0.367347	(0.35,0.378]	chr14	551829	29	INTRON	INTRON	PPP2R5C	ENSG00000078304.20	ENST00000694906.1:ENST00000422945.6:ENST00000554442.5:ENST00000556068.5:ENST00000328724.9:ENST00000554504.1:ENST00000553890.1:ENST00000553554.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	48	2	2.04224	3.50277	4.9633	0.0363073	0.00198929	0.138959	0.0411469
chr1	31061366	31061466	412856	0	-	0.53	(0.515,0.57]	chr1	49749	3	SS5_PROX	SS5_PROX:INTRON	PUM1	ENSG00000134644.16	ENST00000426105.7:ENST00000373747.7:ENST00000257075.9:ENST00000424085.6:ENST00000525843.5:ENST00000440538.6:ENST00000373741.8:ENST00000373742.6:ENST00000526215.5:ENST00000525948.5:ENST00000480602.1:ENST00000524516.1:ENST00000531867.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	31	2	2.83501	3.5026900000000003	4.17037	0.0139194	0.0117686	0.10247	0.0894475
chr11	57414314	57414414	4953317	0	-	0.52	(0.515,0.57]	chr11	464909	3	SS5_PROX	SS5_PROX:INTRON	ENSG00000254979:SLC43A3	ENSG00000254979.5:ENSG00000134802.18	ENST00000534081.5:ENST00000395124.6:ENST00000395123.6:ENST00000352187.5:ENST00000529554.5:ENST00000525205.5:ENST00000533524.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	31	2	2.83501	3.5026900000000003	4.17037	0.0139194	0.0117686	0.10247	0.0894475
chr11	73976047	73976140	4985862	0	-	0.55914	(0.515,0.57]	chr11	470927	4	SS3_PROX	SS3_PROX:INTRON	UCP2	ENSG00000175567.11	ENST00000663595.2:ENST00000310473.9:ENST00000536983.5:ENST00000544615.5:ENST00000545212.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	31	2	2.83501	3.5026900000000003	4.17037	0.0139194	0.0117686	0.10247	0.0894475
chr18	702109	702208	6939673	0	-	0.555556	(0.515,0.57]	chr18	686437	44	INTRON	INTRON	ENOSF1	ENSG00000132199.20	ENST00000647584.2:ENST00000383578.7:ENST00000340116.12:ENST00000581475.5:ENST00000580982.5:ENST00000585128.6:ENST00000584453.5:ENST00000578651.5:ENST00000585004.5:ENST00000579053.5:ENST00000583771.1:ENST00000580605.5:ENST00000581332.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	31	2	2.83501	3.5026900000000003	4.17037	0.0139194	0.0117686	0.10247	0.0894475
chr19	627744	627844	7110027	0	-	0.52	(0.515,0.57]	chr19	713927	21	INTRON	INTRON	POLRMT	ENSG00000099821.14	ENST00000588649.7:ENST00000590573.4	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	2.83501	3.5026900000000003	4.17037	0.0139194	0.0117686	0.10247	0.0894475
chr22	19395107	19395205	7554053	0	-	0.561224	(0.515,0.57]	chr22	772280	2	INTRON	INTRON	HIRA:C22orf39	ENSG00000100084.14:ENSG00000242259.9	ENST00000263208.5:ENST00000340170.8:ENST00000509549.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	31	2	2.83501	3.5026900000000003	4.17037	0.0139194	0.0117686	0.10247	0.0894475
chrX	16802181	16802281	7626436	0	+	0.53	(0.515,0.57]	chrX	780926	152	INTRON	INTRON	TXLNG	ENSG00000086712.13	ENST00000398155.4:ENST00000380122.10	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	2.83501	3.5026900000000003	4.17037	0.0139194	0.0117686	0.10247	0.0894475
chr3	185737415	185737515	1885472	0	-	0.31	(0.28,0.32]	chr3	188573	387	INTRON	INTRON	IGF2BP2	ENSG00000073792.16	ENST00000382199.7:ENST00000346192.7:ENST00000457616.6:ENST00000421047.3:ENST00000461957.5:ENST00000493302.5:ENST00000466476.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	40	2	2.57195	3.502675	4.4334	0.0331711	0.0163355	0.133994	0.109464
chr1	23744370	23744470	44586	0	+	0.38	(0.378,0.408]	chr1	5387	1	SS5_PROX	SS5_PROX:INTRON	ELOA	ENSG00000011007.13	ENST00000418390.7:ENST00000609199.2:ENST00000613537.5:ENST00000487554.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	71	2	3.35998	3.502635	3.64529	0.00230615	4.71767e-4	0.0428247	0.0196294
chr16	67079459	67079559	6366051	0	+	0.39	(0.378,0.408]	chr16	611429	123	INTRON	INTRON	CBFB	ENSG00000067955.15	ENST00000651988.1:ENST00000652360.1:ENST00000561924.6:ENST00000290858.11:ENST00000412916.7:ENST00000564034.6:ENST00000650873.1:ENST00000563939.3:ENST00000565389.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	71	2	3.35998	3.502635	3.64529	0.00230615	4.71767e-4	0.0428247	0.0196294
chr19	10807502	10807597	7014690	0	+	0.410526	(0.408,0.44]	chr19	697017	12	INTRON	INTRON	DNM2	ENSG00000079805.19	ENST00000355667.11:ENST00000389253.9:ENST00000585892.5:ENST00000359692.10:ENST00000408974.8:ENST00000587830.2:ENST00000681972.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	225	2	3.34129	3.502605	3.66392	7.20259e-6	2.51157e-6	0.00201767	0.00100731
chr15	97964216	97964314	6112610	0	+	0.204082	[0,0.28]	chr15	581903	27	INTRON	INTRON	ARRDC4	ENSG00000140450.9	ENST00000268042.7	protein_coding	protein_coding	protein_coding	protein_coding	2	53	2	2.24546	3.5025500000000003	4.75964	0.0232081	0.0206502	0.122348	0.118148
chr10	96132485	96132585	4502217	0	+	0.27	[0,0.28]	chr10	414465	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	ZNF518A	ENSG00000177853.15	ENST00000614149.2:ENST00000488700.5:ENST00000624776.4:ENST00000539666.5:ENST00000563195.1:ENST00000316045.10:ENST00000484770.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	40	2	2.80396	3.50251	4.20106	0.0695895	0.0161429	0.184298	0.109464
chr7	23444691	23444791	3503409	0	-	0.36	(0.35,0.378]	chr7	326910	135	INTRON	INTRON	IGF2BP3	ENSG00000136231.14	ENST00000258729.8:ENST00000421467.6:ENST00000468263.5:ENST00000491719.5:ENST00000476938.5:ENST00000468005.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	36	2	2.60341	3.502345	4.40128	0.0275785	0.0120289	0.123904	0.0962115
chr11	86006642	86006741	5014205	0	-	0.30303	(0.28,0.32]	chr11	472970	28	INTRON	INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000630913.2:ENST00000528398.5:ENST00000356360.9:ENST00000534412.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	18	592	2	3.32455	3.5020949999999997	3.67964	2.89333e-6	2.35208e-7	0.00119813	2.32397e-4
chr4	6882034	6882131	1922587	0	+	0.639175	(0.57,1]	chr4	193044	12	UTR3	UTR3:EXON_MRNA	KIAA0232	ENSG00000170871.12	ENST00000307659.6:ENST00000425103.5	protein_coding	protein_coding	protein_coding	protein_coding	3	50	2	3.2525	3.502075	3.75165	1.55446e-4	1.54884e-4	0.0113252	0.0106835
chr7	152282120	152282220	3679743	0	-	0.45	(0.44,0.476]	chr7	341617	79	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000684262.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	93	2	3.4718	3.5020350000000002	3.53227	0.00136358	5.02287e-5	0.0336321	0.00581045
chr1	86956572	86956672	154012	0	+	0.32	(0.28,0.32]	chr1	16954	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	HS2ST1	ENSG00000153936.18	ENST00000370550.10:ENST00000370551.8:ENST00000687893.1:ENST00000693745.1:ENST00000689904.1:ENST00000690674.1:ENST00000591456.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	48	2	2.13651	3.5019099999999996	4.86731	0.0265696	0.0116253	0.134088	0.0889104
chr17	16020291	16020390	6560749	0	+	0.313131	(0.28,0.32]	chr17	637699	134	INTRON	INTRON	TTC19	ENSG00000011295.16	ENST00000475723.5:ENST00000261647.10:ENST00000497842.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	48	2	2.13651	3.5019099999999996	4.86731	0.0265696	0.0116253	0.134088	0.0889104
chr17	28103322	28103422	6583128	0	+	0.32	(0.28,0.32]	chr17	639837	414	INTRON	INTRON	NLK	ENSG00000087095.13	ENST00000407008.8:ENST00000496808.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	48	2	2.13651	3.5019099999999996	4.86731	0.0265696	0.0116253	0.134088	0.0889104
chr7	140032053	140032152	3658934	0	-	0.313131	(0.28,0.32]	chr7	339580	30	INTRON	INTRON	PARP12	ENSG00000059378.13	ENST00000263549.8:ENST00000473341.5:ENST00000488726.5:ENST00000489809.5:ENST00000491598.5:ENST00000466597.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	48	2	2.13651	3.5019099999999996	4.86731	0.0265696	0.0116253	0.134088	0.0889104
chr7	43584148	43584247	3312333	0	+	0.464646	(0.44,0.476]	chr7	307612	3	INTRON	INTRON	STK17A	ENSG00000164543.7	ENST00000462448.1:ENST00000648544.1:ENST00000319357.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	37	2	3.02751	3.5018849999999997	3.97626	0.0300538	0.00715968	0.142135	0.0723634
chr7	2358014	2358114	3269652	0	+	0.26	[0,0.28]	chr7	303797	22	INTRON	INTRON	EIF3B	ENSG00000106263.19	ENST00000431643.5:ENST00000360876.9:ENST00000413917.5:ENST00000397011.2	protein_coding	protein_coding	protein_coding	protein_coding	5	101	2	1.80301	3.5018599999999998	5.20071	0.0217271	0.00261806	0.11491	0.0470772
chr2	26791432	26791531	715802	0	+	0.414141	(0.408,0.44]	chr2	82664	48	INTRON	INTRON	CENPA	ENSG00000115163.15	ENST00000475662.5:ENST00000472719.5:ENST00000335756.9:ENST00000233505.12:ENST00000419525.5:ENST00000460030.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	50	2	1.9831	3.50169	5.02028	0.018491	0.00303216	0.116694	0.0493883
chr1	12024695	12024794	26877	0	+	0.474747	(0.44,0.476]	chr1	3206	14	INTRON	INTRON	MIIP	ENSG00000116691.11	ENST00000478749.5:ENST00000235332.6:ENST00000466860.5:ENST00000498685.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	31	2	2.66433	3.50166	4.33899	0.0206616	0.0194358	0.119831	0.110999
chr1	19125190	19125268	385893	0	-	0.448718	(0.44,0.476]	chr1	45807	1	SS5_PROX	SS5_PROX:INTRON	UBR4	ENSG00000127481.15	ENST00000375254.8:ENST00000425413.5:ENST00000417040.1:ENST00000475973.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	31	2	2.66433	3.50166	4.33899	0.0206616	0.0194358	0.119831	0.110999
chr11	58608929	58609029	4794042	0	+	0.31	(0.28,0.32]	chr11	443838	237	INTRON	INTRON	ZFP91	ENSG00000186660.15	ENST00000316059.7	protein_coding	protein_coding	protein_coding	protein_coding	2	48	2	1.90263	3.50166	5.10069	0.0503272	0.00610574	0.17488	0.0676501
chr17	7914528	7914627	6719868	0	-	0.444444	(0.44,0.476]	chr17	659240	13	UTR3	UTR3:EXON_MRNA	RNF227	ENSG00000179859.10	ENST00000324348.9:ENST00000635932.1	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	2.66433	3.50166	4.33899	0.0206616	0.0194358	0.119831	0.110999
chr17	82597570	82597667	6693400	0	+	0.474227	(0.44,0.476]	chr17	654694	10	INTRON	INTRON	FOXK2	ENSG00000141568.21	ENST00000473637.6:ENST00000335255.10:ENST00000571989.1:ENST00000529652.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	31	2	2.66433	3.50166	4.33899	0.0206616	0.0194358	0.119831	0.110999
chr2	134193737	134193837	869602	0	+	0.47	(0.44,0.476]	chr2	97549	731	INTRON	INTRON	MGAT5	ENSG00000152127.9	ENST00000468758.1:ENST00000481801.5:ENST00000409645.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	31	2	2.66433	3.50166	4.33899	0.0206616	0.0194358	0.119831	0.110999
chr3	52212520	52212620	1428086	0	+	0.46	(0.44,0.476]	chr3	150757	1	SS5_PROX	SS5_PROX:INTRON	ALAS1	ENSG00000023330.15	ENST00000469224.5:ENST00000394965.6:ENST00000310271.6:ENST00000484952.6:ENST00000493402.1	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	2.66433	3.50166	4.33899	0.0206616	0.0194358	0.119831	0.110999
chr3	183750486	183750584	1580824	0	+	0.469388	(0.44,0.476]	chr3	163068	24	INTRON	INTRON	YEATS2	ENSG00000163872.16	ENST00000305135.10	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	2.66433	3.50166	4.33899	0.0206616	0.0194358	0.119831	0.110999
chr3	185627390	185627490	1585707	0	+	0.45	(0.44,0.476]	chr3	164212	6	INTRON	INTRON	SENP2	ENSG00000163904.13	ENST00000296257.10:ENST00000413407.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	31	2	2.66433	3.50166	4.33899	0.0206616	0.0194358	0.119831	0.110999
chr6	149616729	149616828	3245801	0	-	0.292929	(0.28,0.32]	chr6	301582	116	INTRON	INTRON	KATNA1	ENSG00000186625.14	ENST00000335643.12:ENST00000367411.7:ENST00000335647.9:ENST00000494504.5:ENST00000470620.1:ENST00000444282.5:ENST00000420200.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	48	2	1.90263	3.50166	5.10069	0.0503272	0.00610574	0.17488	0.0676501
chr7	75452813	75452913	3558595	0	-	0.47	(0.44,0.476]	chr7	331545	102	INTRON	INTRON	POM121C	ENSG00000272391.6	ENST00000615331.5:ENST00000398379.2	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	2.66433	3.50166	4.33899	0.0206616	0.0194358	0.119831	0.110999
chr7	148708211	148708311	3443780	0	+	0.46	(0.44,0.476]	chr7	321168	77	INTRON	INTRON	CUL1	ENSG00000055130.18	ENST00000409469.5:ENST00000662716.1:ENST00000665936.1:ENST00000663044.1:ENST00000602748.5:ENST00000663835.1:ENST00000655324.1:ENST00000662132.1:ENST00000325222.9:ENST00000656001.1:ENST00000666124.1:ENST00000671421.1:ENST00000671397.1:ENST00000662670.1:ENST00000660240.1:ENST00000662975.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	31	2	2.66433	3.50166	4.33899	0.0206616	0.0194358	0.119831	0.110999
chr22	27855139	27855239	7565213	0	-	0.29	(0.28,0.32]	chr22	774085	2	SS3_PROX	SS3_PROX:INTRON	PITPNB	ENSG00000180957.19	ENST00000335272.10:ENST00000320996.14:ENST00000634017.1:ENST00000477861.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	37	2	2.86113	3.5016350000000003	4.14214	0.0579756	0.0122675	0.167723	0.0969406
chr6	99559622	99559717	3167262	0	-	0.284211	(0.28,0.32]	chr6	295526	7	INTRON	INTRON	CCNC	ENSG00000112237.13	ENST00000520429.6:ENST00000326298.8:ENST00000369220.8:ENST00000520371.5:ENST00000523961.5:ENST00000523799.5:ENST00000486428.6:ENST00000523985.5:ENST00000518714.5:ENST00000484049.6:ENST00000524049.5:ENST00000627680.2:ENST00000521017.5:ENST00000523639.5:ENST00000369217.8:ENST00000482541.2:ENST00000523310.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	37	2	2.86113	3.5016350000000003	4.14214	0.0579756	0.0122675	0.167723	0.0969406
chr6	157208635	157208732	3011519	0	+	0.226804	[0,0.28]	chr6	281262	2	UTR3	UTR3:EXON_MRNA	ARID1B	ENSG00000049618.24	ENST00000346085.10:ENST00000636930.2:ENST00000647938.1:ENST00000350026.10:ENST00000414678.7:ENST00000635849.1:ENST00000637904.1:ENST00000637015.1:ENST00000636940.1:ENST00000636227.1:ENST00000636254.1:ENST00000637933.1:ENST00000635928.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	52	2	2.05756	3.5015850000000004	4.94561	0.0352544	0.0150263	0.150301	0.0994339
chr2	235509136	235509236	1041486	0	+	0.29	(0.28,0.32]	chr2	111217	139	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	140	2	2.68839	3.501565	4.31474	0.00201131	2.35733e-5	0.04086	0.00380411
chr10	3104044	3104144	4381898	0	+	0.34	(0.32,0.35]	chr10	404084	1	SS5_PROX	SS5_PROX:INTRON	PFKP	ENSG00000067057.18	ENST00000381125.9:ENST00000381075.7:ENST00000678206.1:ENST00000678089.1:ENST00000676796.1:ENST00000407806.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	79	2	3.31533	3.50154	3.68775	0.00323121	4.66127e-4	0.0507087	0.0195589
chr2	55615806	55615906	1125104	0	-	0.43	(0.408,0.44]	chr2	120681	3	SS3_PROX	SS3_PROX:INTRON	PPP4R3B	ENSG00000275052.5	ENST00000616407.2:ENST00000611717.4:ENST00000616288.4:ENST00000470801.1:ENST00000612688.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	50	2	1.75791	3.50146	5.24501	0.0378795	0.00137378	0.157034	0.0336718
chr16	24061021	24061121	6326016	0	+	0.4	(0.378,0.408]	chr16	605723	251	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000498739.1:ENST00000647422.1:ENST00000486868.1:ENST00000482000.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	32	2	2.78705	3.50134	4.21563	0.0315429	0.0135539	0.13151	0.101363
chr21	15810636	15810736	7370910	0	+	0.38	(0.378,0.408]	chr21	752233	1	SS3_PROX	SS3_PROX:INTRON	USP25	ENSG00000155313.16	ENST00000400183.7:ENST00000285681.6:ENST00000285679.10:ENST00000351097.9:ENST00000547201.5:ENST00000549362.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	32	2	2.78705	3.50134	4.21563	0.0315429	0.0135539	0.13151	0.101363
chr6	38117239	38117338	2860014	0	+	0.40404	(0.378,0.408]	chr6	270263	1	INTRON	INTRON	ZFAND3	ENSG00000156639.12	ENST00000287218.9:ENST00000373391.6:ENST00000373389.5:ENST00000440482.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	32	2	2.78705	3.50134	4.21563	0.0315429	0.0135539	0.13151	0.101363
chr7	138479796	138479896	3434836	0	+	0.4	(0.378,0.408]	chr7	319959	181	INTRON	INTRON	TRIM24	ENSG00000122779.18	ENST00000343526.9:ENST00000415680.6:ENST00000497516.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	32	2	2.78705	3.50134	4.21563	0.0315429	0.0135539	0.13151	0.101363
chr9	34242108	34242208	4111907	0	+	0.4	(0.378,0.408]	chr9	374740	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	UBAP1	ENSG00000165006.14	ENST00000625521.2:ENST00000379186.8:ENST00000297661.9:ENST00000626262.2:ENST00000359544.2	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	2.78705	3.50134	4.21563	0.0315429	0.0135539	0.13151	0.101363
chr15	40695860	40695960	6003182	0	+	0.51	(0.476,0.515]	chr15	570994	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	RAD51	ENSG00000051180.17	ENST00000527860.5:ENST00000423169.6:ENST00000557850.5:ENST00000267868.8:ENST00000645673.2:ENST00000382643.7:ENST00000525066.5:ENST00000526763.6:ENST00000532743.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	50	2	1.74317	3.50131	5.25945	0.0396373	0.00111445	0.161534	0.0306328
chr20	53585465	53585565	7358401	0	-	0.54	(0.515,0.57]	chr20	750309	19	INTRON	INTRON	ZNF217	ENSG00000171940.14	ENST00000371471.7:ENST00000431687.5:ENST00000540425.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	62	2	3.19178	3.50129	3.8108	0.00289534	2.17298e-4	0.0494641	0.0135077
chr18	2925956	2926045	6944209	0	-	0.460674	(0.44,0.476]	chr18	686752	2	INTRON	INTRON	LPIN2	ENSG00000101577.10	ENST00000261596.8:ENST00000677752.1	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	2.39604	3.501255	4.60647	0.0404291	0.0102339	0.161534	0.0850389
chr19	10400693	10400793	7136025	0	-	0.46	(0.44,0.476]	chr19	719567	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	CDC37	ENSG00000105401.9	ENST00000222005.7:ENST00000591248.5:ENST00000589629.5:ENST00000593124.1:ENST00000588869.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	31	2	2.39604	3.501255	4.60647	0.0404291	0.0102339	0.161534	0.0850389
chr2	99387917	99388017	835332	0	+	0.45	(0.44,0.476]	chr2	93732	46	INTRON	INTRON	EIF5B	ENSG00000158417.11	ENST00000617677.1:ENST00000289371.11	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	2.39604	3.501255	4.60647	0.0404291	0.0102339	0.161534	0.0850389
chr8	99053829	99053928	3811664	0	+	0.474747	(0.44,0.476]	chr8	353065	149	INTRON	INTRON	VPS13B	ENSG00000132549.20	ENST00000496144.5:ENST00000683334.1:ENST00000682853.1:ENST00000357162.7:ENST00000358544.7:ENST00000683619.1:ENST00000441350.2:ENST00000684269.1:ENST00000682806.1:ENST00000683869.1:ENST00000682153.1:ENST00000682358.1:ENST00000682145.1:ENST00000355155.6:ENST00000682234.1:ENST00000683486.1:ENST00000684308.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	31	2	2.39604	3.501255	4.60647	0.0404291	0.0102339	0.161534	0.0850389
chrX	65533413	65533511	7827642	0	-	0.459184	(0.44,0.476]	chrX	798741	9	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	LAS1L	ENSG00000001497.18	ENST00000677056.1:ENST00000677969.1:ENST00000374811.8:ENST00000374807.9:ENST00000677834.1:ENST00000484069.1:ENST00000374804.9:ENST00000677986.1:ENST00000677087.1:ENST00000679056.1:ENST00000679261.1:ENST00000678074.1:ENST00000678705.1:ENST00000679277.1:ENST00000677154.1:ENST00000678547.1:ENST00000678956.1:ENST00000679116.1:ENST00000678848.1:ENST00000678173.1:ENST00000676986.1:ENST00000678823.1:ENST00000678570.1:ENST00000678602.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	31	2	2.39604	3.501255	4.60647	0.0404291	0.0102339	0.161534	0.0850389
chrX	103679348	103679446	7856506	0	-	0.469388	(0.44,0.476]	chrX	801086	3	INTRON	INTRON	MORF4L2	ENSG00000123562.18	ENST00000360458.5:ENST00000441076.7:ENST00000433176.6:ENST00000451301.5:ENST00000434230.5:ENST00000418819.5:ENST00000442614.5:ENST00000492116.5:ENST00000422355.5:ENST00000474653.5:ENST00000498064.1:ENST00000467755.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	31	2	2.39604	3.501255	4.60647	0.0404291	0.0102339	0.161534	0.0850389
chr2	38587567	38587666	1099623	0	-	0.313131	(0.28,0.32]	chr2	117951	13	INTRON	INTRON	HNRNPLL	ENSG00000143889.16	ENST00000449105.8:ENST00000409636.5:ENST00000358367.8:ENST00000608859.5:ENST00000378915.7:ENST00000272249.7:ENST00000409328.5:ENST00000410076.5:ENST00000425682.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	74	2	1.51187	3.501235	5.4906	0.0598267	4.89126e-4	0.169278	0.0199693
chr21	37403877	37403977	7406593	0	+	0.35	(0.32,0.35]	chr21	754850	284	INTRON	INTRON	DYRK1A	ENSG00000157540.22	ENST00000646523.1:ENST00000647425.1:ENST00000647188.2:ENST00000647504.1:ENST00000644942.1:ENST00000338785.8:ENST00000643624.1:ENST00000643551.1:ENST00000426672.6:ENST00000398960.7	protein_coding	protein_coding	protein_coding	protein_coding	1	37	2	2.4458	3.501205	4.55661	0.0425977	0.00927858	0.148082	0.0855292
chr6	107425600	107425700	3181574	0	-	0.35	(0.32,0.35]	chr6	296346	909	INTRON	INTRON	PDSS2	ENSG00000164494.12	ENST00000369037.9:ENST00000369031.4	protein_coding	protein_coding	protein_coding	protein_coding	1	37	2	2.4458	3.501205	4.55661	0.0425977	0.00927858	0.148082	0.0855292
chr6	157629146	157629227	3014029	0	+	0.333333	(0.32,0.35]	chr6	281289	3	INTRON	INTRON	ZDHHC14	ENSG00000175048.17	ENST00000414563.6:ENST00000359775.10:ENST00000518214.5:ENST00000341375.12:ENST00000340347.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	37	2	2.4458	3.501205	4.55661	0.0425977	0.00927858	0.148082	0.0855292
chr18	12715439	12715538	6876034	0	+	0.313131	(0.28,0.32]	chr18	681236	23	INTRON	INTRON	PSMG2	ENSG00000128789.21	ENST00000585331.6:ENST00000586445.5:ENST00000590217.5:ENST00000586587.1:ENST00000317615.11	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	67	2	1.79739	3.500995	5.2046	0.0224995	0.00448664	0.124921	0.0593175
chrX	74587555	74587655	7841674	0	-	0.32	(0.28,0.32]	chrX	799768	47	UTR3	UTR3:EXON_MRNA	RLIM	ENSG00000131263.13	ENST00000332687.11	protein_coding	protein_coding	protein_coding	protein_coding	4	67	2	1.79739	3.500995	5.2046	0.0224995	0.00448664	0.124921	0.0593175
chr17	78758635	78758734	6845599	0	-	0.454545	(0.44,0.476]	chr17	677345	218	INTRON	INTRON	CYTH1	ENSG00000108669.17	ENST00000589296.5:ENST00000361101.8:ENST00000446868.8:ENST00000591455.5:ENST00000591574.5:ENST00000592497.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	33	2	2.29842	3.500985	4.70355	0.0552483	0.00383786	0.165463	0.0562562
chr5	180526874	180526974	2562188	0	+	0.47	(0.44,0.476]	chr5	245082	309	INTRON	INTRON	CNOT6	ENSG00000113300.13	ENST00000261951.9:ENST00000393356.7:ENST00000507016.1:ENST00000618123.4:ENST00000502447.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	33	2	2.29842	3.500985	4.70355	0.0552483	0.00383786	0.165463	0.0562562
chr6	42054738	42054835	2864711	0	+	0.463918	(0.44,0.476]	chr6	270956	29	INTRON	INTRON	TAF8	ENSG00000137413.17	ENST00000372978.7:ENST00000686935.1:ENST00000372982.8:ENST00000456846.6:ENST00000494547.5:ENST00000372977.8:ENST00000688562.1:ENST00000686229.1:ENST00000691805.1:ENST00000472818.6:ENST00000687601.1:ENST00000688007.1:ENST00000689833.1:ENST00000482926.1:ENST00000687266.1:ENST00000465926.5:ENST00000482432.1:ENST00000684962.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	33	2	2.29842	3.500985	4.70355	0.0552483	0.00383786	0.165463	0.0562562
chr7	99905790	99905890	3584930	0	-	0.47	(0.44,0.476]	chr7	334020	18	INTRON	INTRON	TRIM4	ENSG00000146833.16	ENST00000447480.5:ENST00000349062.7:ENST00000355947.6:ENST00000354241.5	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	2.29842	3.500985	4.70355	0.0552483	0.00383786	0.165463	0.0562562
chr12	111591354	111591454	5413153	0	-	0.45	(0.44,0.476]	chr12	516941	266	INTRON	INTRON	ATXN2	ENSG00000204842.18	ENST00000642389.2:ENST00000608853.5:ENST00000672613.1:ENST00000673436.1:ENST00000643669.2:ENST00000616825.4:ENST00000389153.10:ENST00000550104.5:ENST00000483311.6:ENST00000672335.1:ENST00000673557.1:ENST00000673283.1:ENST00000673449.1:ENST00000535949.5:ENST00000542287.6:ENST00000644883.1:ENST00000647305.1:ENST00000671792.1:ENST00000392645.6:ENST00000672105.1:ENST00000549455.1:ENST00000548492.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	57	2	1.60176	3.5008800000000004	5.4	0.0389597	7.02611e-4	0.160861	0.024224
chr18	59333842	59333940	6980780	0	-	0.214286	[0,0.28]	chr18	690731	2	INTRON	INTRON	LMAN1	ENSG00000074695.6	ENST00000251047.6	protein_coding	protein_coding	protein_coding	protein_coding	3	63	2	1.84046	3.50088	5.1613	0.0335889	0.00866441	0.146709	0.0787025
chr12	50143670	50143764	5322927	0	-	0.446809	(0.44,0.476]	chr12	507489	6	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CERS5	ENSG00000139624.14	ENST00000317551.12:ENST00000422340.6:ENST00000551697.5:ENST00000380189.8:ENST00000547787.5:ENST00000551005.5:ENST00000438450.6:ENST00000542320.5:ENST00000547800.2:ENST00000548930.5:ENST00000551384.1:ENST00000549389.5:ENST00000550258.5:ENST00000547455.5:ENST00000546514.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	33	2	2.38219	3.500865	4.61954	0.045456	0.00506805	0.149888	0.0646039
chr16	10744663	10744762	6287283	0	+	0.444444	(0.44,0.476]	chr16	602055	2	INTRON	INTRON	NUBP1	ENSG00000103274.11	ENST00000574334.5:ENST00000571790.5:ENST00000283027.10:ENST00000574137.1:ENST00000433392.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	33	2	2.38219	3.500865	4.61954	0.045456	0.00506805	0.149888	0.0646039
chr22	50508945	50509044	7545245	0	+	0.454545	(0.44,0.476]	chr22	771151	1	INTRON	INTRON	NCAPH2	ENSG00000025770.19	ENST00000420993.7:ENST00000395698.7:ENST00000395701.7:ENST00000518394.5:ENST00000523045.5:ENST00000418794.1:ENST00000299821.15	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	33	2	2.38219	3.500865	4.61954	0.045456	0.00506805	0.149888	0.0646039
chr8	131972238	131972338	3864731	0	+	0.46	(0.44,0.476]	chr8	355717	12	INTRON	INTRON	EFR3A	ENSG00000132294.15	ENST00000254624.10:ENST00000637848.1:ENST00000519656.1	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	2.38219	3.500865	4.61954	0.045456	0.00506805	0.149888	0.0646039
chr16	90189068	90189167	6424782	0	+	0.383838	(0.378,0.408]	chr16	617262	14	INTRON	INTRON	LINC02193	ENSG00000260923.7	ENST00000568418.1:ENST00000656587.1:ENST00000668099.1:ENST00000569162.2:ENST00000665776.1:ENST00000669853.1:ENST00000668039.1:ENST00000658135.1:ENST00000663101.1:ENST00000663757.1:ENST00000568947.2	lncRNA	lncRNA	lncRNA	lncRNA	1	36	2	2.78946	3.50086	4.21226	0.0177403	0.0158859	0.11319	0.101453
chr7	1451287	1451387	3462198	0	-	0.64	(0.57,1]	chr7	323713	6	INTRON	INTRON	MICALL2	ENSG00000164877.19	ENST00000472100.5:ENST00000297508.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	60	2	2.66249	3.50073	4.33897	9.0016e-4	3.16397e-6	0.0277303	0.00115089
chr1	28918471	28918571	58995	0	+	0.3	(0.28,0.32]	chr1	7621	33	INTRON	INTRON	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000647918.1:ENST00000646800.1:ENST00000644342.1:ENST00000646189.1:ENST00000482464.6:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000646260.1:ENST00000373798.5:ENST00000644600.1:ENST00000649674.1:ENST00000643173.1:ENST00000343067.9:ENST00000644780.1:ENST00000650265.1:ENST00000648181.1:ENST00000643604.1:ENST00000648891.1:ENST00000373797.2:ENST00000349460.9:ENST00000645184.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	49	2	2.33771	3.5006500000000003	4.66359	0.0193496	0.0142701	0.108861	0.103838
chr1	108305894	108305994	176694	0	+	0.38	(0.378,0.408]	chr1	19153	212	INTRON	INTRON	SLC25A24P1	ENSG00000241361.8	ENST00000411846.6:ENST00000434803.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	1	34	2	2.30961	3.5006500000000003	4.69169	0.055088	0.00432302	0.165463	0.0599409
chr1	148140366	148140464	545393	0	-	0.285714	(0.28,0.32]	chr1	63789	22	INTRON	INTRON	NBPF11	ENSG00000263956.8	ENST00000615281.4:ENST00000682118.1:ENST00000614506.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	49	2	2.33771	3.5006500000000003	4.66359	0.0193496	0.0142701	0.108861	0.103838
chr4	39933160	39933260	2131757	0	-	0.4	(0.378,0.408]	chr4	210242	46	INTRON	INTRON	PDS5A	ENSG00000121892.15	ENST00000303538.13:ENST00000503396.5	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	2.30961	3.5006500000000003	4.69169	0.055088	0.00432302	0.165463	0.0599409
chr6	35612897	35612997	3086753	0	-	0.38	(0.378,0.408]	chr6	288763	151	INTRON	INTRON	FKBP5	ENSG00000096060.15	ENST00000536438.5:ENST00000539068.5:ENST00000357266.9:ENST00000542713.1	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	2.30961	3.5006500000000003	4.69169	0.055088	0.00432302	0.165463	0.0599409
chr7	76561817	76561917	3340486	0	+	0.39	(0.378,0.408]	chr7	311170	99	INTRON	INTRON	ENSG00000205485	ENSG00000205485.13	ENST00000418663.5:ENST00000450661.1:ENST00000423084.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	1	34	2	2.30961	3.5006500000000003	4.69169	0.055088	0.00432302	0.165463	0.0599409
chr8	67124656	67124756	3777257	0	+	0.38	(0.378,0.408]	chr8	350363	11	INTRON	INTRON	CSPP1	ENSG00000104218.16	ENST00000676113.1:ENST00000675306.2:ENST00000678156.1:ENST00000262210.11:ENST00000678017.1:ENST00000675869.1:ENST00000678542.1:ENST00000677619.1:ENST00000676605.1:ENST00000676471.1:ENST00000677256.1:ENST00000676847.1:ENST00000677009.1:ENST00000675820.1:ENST00000676317.1:ENST00000677592.1:ENST00000676573.1:ENST00000678318.1:ENST00000677473.1:ENST00000674993.1:ENST00000678553.1:ENST00000679226.1:ENST00000676882.1:ENST00000675955.1:ENST00000678728.1:ENST00000677430.1:ENST00000677455.1:ENST00000678616.1:ENST00000678362.1:ENST00000679112.1:ENST00000678645.1:ENST00000676567.1:ENST00000677845.1:ENST00000519163.6:ENST00000676858.1:ENST00000678747.1:ENST00000519668.1:ENST00000676697.1:ENST00000678216.1:ENST00000677855.1:ENST00000676695.1:ENST00000677836.1:ENST00000677070.1:ENST00000678444.1:ENST00000676534.1:ENST00000678138.1:ENST00000678807.1:ENST00000677052.1:ENST00000679274.1:ENST00000679042.1:ENST00000678345.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	34	2	2.30961	3.5006500000000003	4.69169	0.055088	0.00432302	0.165463	0.0599409
chr14	53094632	53094730	5896838	0	-	0.428571	(0.408,0.44]	chr14	560073	8	INTRON	INTRON	DDHD1	ENSG00000100523.16	ENST00000395606.5:ENST00000612692.4:ENST00000673822.2:ENST00000357758.3:ENST00000673827.1:ENST00000674014.1:ENST00000323669.10:ENST00000673930.1:ENST00000674152.1:ENST00000556910.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	45	2	1.81572	3.50054	5.18536	0.0626779	6.17381e-4	0.175915	0.0223951
chr2	36874207	36874306	1093670	0	-	0.424242	(0.408,0.44]	chr2	117167	41	INTRON	INTRON	STRN	ENSG00000115808.12	ENST00000263918.9:ENST00000379213.3:ENST00000495595.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	45	2	1.81572	3.50054	5.18536	0.0626779	6.17381e-4	0.175915	0.0223951
chr1	54203439	54203537	107923	0	+	0.387755	(0.378,0.408]	chr1	14036	25	INTRON	INTRON	MRPL37	ENSG00000116221.15	ENST00000487096.5:ENST00000360840.9:ENST00000336230.10:ENST00000605337.5:ENST00000490670.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	32	2	2.26252	3.5004549999999997	4.73839	0.056222	0.00837252	0.18407	0.0774402
chr16	28201797	28201897	6468364	0	-	0.4	(0.378,0.408]	chr16	624597	204	INTRON	INTRON	XPO6	ENSG00000169180.12	ENST00000304658.10:ENST00000565698.5:ENST00000569951.1:ENST00000566073.1	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	2.26252	3.5004549999999997	4.73839	0.056222	0.00837252	0.18407	0.0774402
chr2	158553615	158553715	898113	0	+	0.38	(0.378,0.408]	chr2	99358	45	INTRON	INTRON	PKP4	ENSG00000144283.23	ENST00000389759.8:ENST00000426248.7:ENST00000389757.7:ENST00000457109.5:ENST00000452162.5:ENST00000411900.5:ENST00000421462.5:ENST00000462335.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	32	2	2.26252	3.5004549999999997	4.73839	0.056222	0.00837252	0.18407	0.0774402
chr4	26333944	26334044	1936802	0	+	0.39	(0.378,0.408]	chr4	194354	106	INTRON	INTRON	RBPJ	ENSG00000168214.22	ENST00000512351.5:ENST00000681799.1:ENST00000681403.1:ENST00000342295.6:ENST00000512671.6:ENST00000506956.5:ENST00000345843.8:ENST00000361572.10:ENST00000514380.5:ENST00000514807.5:ENST00000348160.9:ENST00000681506.1:ENST00000509158.6:ENST00000691085.1:ENST00000692303.1:ENST00000681856.1:ENST00000513182.5:ENST00000681025.1:ENST00000681679.1:ENST00000680210.1:ENST00000355476.8:ENST00000680140.1:ENST00000511401.5:ENST00000680511.1:ENST00000510778.7:ENST00000679698.1:ENST00000679469.1:ENST00000681484.1:ENST00000505958.6:ENST00000507561.5:ENST00000514730.5:ENST00000507574.5:ENST00000514675.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	32	2	2.26252	3.5004549999999997	4.73839	0.056222	0.00837252	0.18407	0.0774402
chr20	3975299	3975399	7309005	0	-	0.34	(0.32,0.35]	chr20	744300	5	INTRON	INTRON	RNF24	ENSG00000101236.17	ENST00000336095.10:ENST00000358395.11:ENST00000545616.2	protein_coding	protein_coding	protein_coding	protein_coding	4	131	2	2.91313	3.5003400000000005	4.08755	6.41184e-4	6.37693e-5	0.0231685	0.00660941
chr18	204892	204992	6855303	0	+	0.44	(0.408,0.44]	chr18	679565	2	SS5_PROX	SS5_PROX:INTRON	USP14	ENSG00000101557.15	ENST00000582707.5:ENST00000400266.7:ENST00000261601.8:ENST00000578942.5:ENST00000383589.6:ENST00000578786.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	124	2	3.14831	3.500325	3.85234	5.86664e-4	6.9129e-6	0.022457	0.00187033
chr4	68323489	68323563	2154611	0	-	0.608108	(0.57,1]	chr4	212239	2	INTRON	INTRON	YTHDC1	ENSG00000083896.13	ENST00000344157.9:ENST00000355665.7:ENST00000579690.5:ENST00000506175.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	41	2	2.89463	3.50031	4.10599	0.00788262	1.62785e-5	0.076155	0.00304426
chr7	127657449	127657549	3402444	0	+	0.38	(0.378,0.408]	chr7	318063	46	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000463020.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	46	2	1.88729	3.50022	5.11315	0.0532327	9.26795e-4	0.162538	0.0278442
chr11	87138055	87138155	4843815	0	+	0.36	(0.35,0.378]	chr11	451856	463	INTRON	INTRON	TMEM135	ENSG00000166575.17	ENST00000340353.11:ENST00000529023.5:ENST00000526733.5:ENST00000305494.6:ENST00000532959.5:ENST00000525018.5:ENST00000531800.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	99	2	3.26804	3.500145	3.73225	5.46487e-4	2.47065e-4	0.0215463	0.0139149
chr12	70284503	70284602	5166845	0	+	0.313131	(0.28,0.32]	chr12	489381	59	INTRON	INTRON	CNOT2	ENSG00000111596.14	ENST00000547780.5:ENST00000418359.7:ENST00000552319.5:ENST00000550160.5:ENST00000551661.5:ENST00000551132.5:ENST00000553078.5:ENST00000548021.5:ENST00000550641.6:ENST00000229195.8:ENST00000552915.5:ENST00000549443.5:ENST00000548741.5:ENST00000552483.5:ENST00000552422.5:ENST00000547321.5:ENST00000553020.5:ENST00000548159.5:ENST00000549750.5:ENST00000551043.5:ENST00000548599.5:ENST00000550194.5:ENST00000551873.5:ENST00000547867.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	77	2	1.84658	3.50008	5.15358	0.0128582	0.0052282	0.0990564	0.0633615
chr6	32970245	32970339	2846422	0	+	0.648936	(0.57,1]	chr6	268429	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	BRD2:ENSG00000223837	ENSG00000204256.14:ENSG00000223837.2	ENST00000374825.9:ENST00000469132.2:ENST00000679179.1:ENST00000678778.1:ENST00000496118.2:ENST00000449085.4:ENST00000677331.1:ENST00000456339.5:ENST00000678250.1:ENST00000415875.2:ENST00000580234.1:ENST00000677085.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA:processed_transcript	4	38	2	1.87172	3.4999249999999997	5.12813	0.0152293	8.62401e-5	0.0996307	0.00783027
chr9	130758954	130759054	4214314	0	+	0.45	(0.44,0.476]	chr9	386427	441	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000393293.4	protein_coding	protein_coding	protein_coding	protein_coding	9	259	2	3.43805	3.499855	3.56166	3.17593e-6	1.49992e-6	0.00127469	7.32159e-4
chr10	42353296	42353396	4603308	0	-	0.32	(0.28,0.32]	chr10	424082	3	SS3_PROX	SS3_PROX:INTRON	ENSG00000215146	ENSG00000215146.5	ENST00000609841.1:ENST00000650175.1:ENST00000609034.1:ENST00000609502.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	1	39	2	2.39347	3.499785	4.6061	0.0504457	0.0102724	0.156383	0.089002
chr18	56000602	56000702	6911101	0	+	0.29	(0.28,0.32]	chr18	684217	15	INTRON	INTRON	ENSG00000267327	ENSG00000267327.2	ENST00000589440.1:ENST00000666716.1:ENST00000588803.1	lncRNA	lncRNA	lncRNA	lncRNA	1	39	2	2.39347	3.499785	4.6061	0.0504457	0.0102724	0.156383	0.089002
chr19	48751783	48751851	7199281	0	-	0.514706	(0.476,0.515]	chr19	729877	1	INTRON	INTRON	FUT1	ENSG00000174951.12	ENST00000645652.2	protein_coding	protein_coding	protein_coding	protein_coding	4	57	2	1.63962	3.499785	5.35995	0.0346854	7.54256e-4	0.148144	0.0251179
chr6	35888413	35888512	3088493	0	-	0.313131	(0.28,0.32]	chr6	288872	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SRPK1	ENSG00000096063.16	ENST00000373825.7:ENST00000423325.6:ENST00000346162.10:ENST00000361690.7:ENST00000510290.5:ENST00000373821.6:ENST00000508473.5:ENST00000512445.5:ENST00000513367.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	39	2	2.39347	3.499785	4.6061	0.0504457	0.0102724	0.156383	0.089002
chr17	70048113	70048213	6827926	0	-	0.27	[0,0.28]	chr17	674995	256	INTRON	INTRON	ENSG00000230258	ENSG00000230258.6	ENST00000435112.5:ENST00000587325.1	lncRNA	lncRNA	lncRNA	lncRNA	5	80	2	1.37159	3.49976	5.62793	0.0634918	0.0022037	0.198135	0.0417893
chr7	127925863	127925963	3405156	0	+	0.44	(0.408,0.44]	chr7	318161	207	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000465900.5:ENST00000486037.1:ENST00000484767.5:ENST00000492840.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	126	2	2.93539	3.49959	4.06379	9.4061e-5	9.31794e-5	0.00857086	0.00813008
chr1	27554204	27554304	406975	0	-	0.5	(0.476,0.515]	chr1	49012	5	INTRON	INTRON	AHDC1	ENSG00000126705.15	ENST00000247087.10:ENST00000673934.1:ENST00000644989.1:ENST00000374011.6:ENST00000642416.1:ENST00000642245.1:ENST00000643308.1:ENST00000487743.3:ENST00000490295.2:ENST00000645669.1:ENST00000644550.1:ENST00000480033.3:ENST00000644119.1:ENST00000643219.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	31	2	2.65268	3.49958	4.34648	0.0201975	0.0193566	0.121243	0.108861
chr17	77192801	77192900	6679161	0	+	0.494949	(0.476,0.515]	chr17	652373	11	INTRON	INTRON	SEC14L1	ENSG00000129657.16	ENST00000392476.6:ENST00000589827.5:ENST00000430767.8:ENST00000585618.5:ENST00000436233.9:ENST00000443798.8:ENST00000591786.5:ENST00000591437.5:ENST00000588616.6:ENST00000431431.6:ENST00000590483.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	31	2	2.65268	3.49958	4.34648	0.0201975	0.0193566	0.121243	0.108861
chr19	1075379	1075477	6993730	0	+	0.479592	(0.476,0.515]	chr19	692778	1	INTRON	INTRON	ARHGAP45	ENSG00000180448.11	ENST00000539243.6:ENST00000313093.7:ENST00000587602.5:ENST00000591293.2:ENST00000590214.5:ENST00000586866.5:ENST00000543365.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	31	2	2.65268	3.49958	4.34648	0.0201975	0.0193566	0.121243	0.108861
chr20	49079317	49079415	7284129	0	+	0.510204	(0.476,0.515]	chr20	740884	3	INTRON	INTRON	CSE1L	ENSG00000124207.17	ENST00000396192.7:ENST00000262982.3	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	2.65268	3.49958	4.34648	0.0201975	0.0193566	0.121243	0.108861
chr22	50404096	50404196	7544802	0	+	0.48	(0.476,0.515]	chr22	771041	96	INTRON	INTRON	PPP6R2	ENSG00000100239.16	ENST00000359139.7:ENST00000395741.7:ENST00000612753.5:ENST00000395744.7:ENST00000216061.9	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	2.65268	3.49958	4.34648	0.0201975	0.0193566	0.121243	0.108861
chr4	87120465	87120564	1995669	0	+	0.484848	(0.476,0.515]	chr4	199104	48	INTRON	INTRON	AFF1	ENSG00000172493.23	ENST00000395146.9:ENST00000674009.1:ENST00000544085.6:ENST00000307808.10:ENST00000503369.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	31	2	2.65268	3.49958	4.34648	0.0201975	0.0193566	0.121243	0.108861
chr4	78915872	78915971	1982805	0	+	0.323232	(0.32,0.35]	chr4	198565	40	UTR3	UTR3:EXON_MRNA	BMP2K	ENSG00000138756.19	ENST00000502613.3	protein_coding	protein_coding	protein_coding	protein_coding	3	116	2	3.49869	3.499485	3.50028	0.00108004	1.55472e-4	0.0300133	0.0113474
chr11	57805180	57805280	4793581	0	+	0.41	(0.408,0.44]	chr11	443774	4	SS5_PROX	SS5_PROX:INTRON	ENSG00000288534:CTNND1	ENSG00000288534.1:ENSG00000198561.16	ENST00000673781.1:ENST00000673810.1:ENST00000674116.1:ENST00000674060.1:ENST00000524630.5:ENST00000529919.5:ENST00000682741.1:ENST00000358694.10:ENST00000361332.8:ENST00000361391.10:ENST00000361796.9:ENST00000415361.6:ENST00000426142.6:ENST00000428599.6:ENST00000525902.5:ENST00000526357.5:ENST00000526772.5:ENST00000527467.5:ENST00000528232.5:ENST00000528621.5:ENST00000529526.5:ENST00000529873.5:ENST00000529986.5:ENST00000530094.5:ENST00000530748.5:ENST00000531014.5:ENST00000532245.5:ENST00000532463.5:ENST00000532649.5:ENST00000532787.5:ENST00000532844.5:ENST00000533667.5:ENST00000534579.5:ENST00000399050.10:ENST00000526938.5:ENST00000531007.2:ENST00000674015.1:ENST00000673826.1:ENST00000673683.1:ENST00000674106.1:ENST00000681984.1:ENST00000683906.1:ENST00000673661.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	185	2	2.2989	3.4994700000000005	4.70004	2.95812e-4	2.68333e-6	0.0153895	0.00115663
chr10	87789719	87789809	4662294	0	-	0.255556	[0,0.28]	chr10	429593	2	INTRON	INTRON	ATAD1	ENSG00000138138.14	ENST00000680024.1:ENST00000308448.11:ENST00000681308.1:ENST00000328142.3:ENST00000681602.1:ENST00000680388.1:ENST00000681629.1:ENST00000495903.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	43	2	2.44242	3.4993	4.55618	0.0491024	0.0171034	0.155269	0.110899
chr16	18170124	18170223	6454336	0	-	0.232323	[0,0.28]	chr16	621964	187	INTRON	INTRON	ENSG00000260242	ENSG00000260242.1	ENST00000563866.1	lncRNA	lncRNA	lncRNA	lncRNA	1	43	2	2.44242	3.4993	4.55618	0.0491024	0.0171034	0.155269	0.110899
chr13	110685825	110685925	5649908	0	-	0.49	(0.476,0.515]	chr13	538268	23	INTRON	INTRON	CARS2	ENSG00000134905.17	ENST00000257347.9:ENST00000535398.5:ENST00000465145.5:ENST00000539269.5:ENST00000544488.5:ENST00000541443.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	31	2	2.38442	3.49922	4.61402	0.0417472	0.00947755	0.161736	0.0817766
chr15	41338015	41338114	6004822	0	+	0.494949	(0.476,0.515]	chr15	571290	46	INTRON	INTRON	NUSAP1	ENSG00000137804.14	ENST00000668273.1:ENST00000260359.10:ENST00000558123.5:ENST00000559046.5:ENST00000414849.6:ENST00000450592.6:ENST00000559596.6:ENST00000558582.5:ENST00000560747.5:ENST00000559659.1:ENST00000560177.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	31	2	2.38442	3.49922	4.61402	0.0417472	0.00947755	0.161736	0.0817766
chr19	28468683	28468783	7165781	0	-	0.48	(0.476,0.515]	chr19	724189	4	INTRON	INTRON	ENSG00000283403:ENSG00000267243	ENSG00000283403.1:ENSG00000267243.6	ENST00000592347.5:ENST00000593065.5	lncRNA	lncRNA	lncRNA	lncRNA	1	31	2	2.38442	3.49922	4.61402	0.0417472	0.00947755	0.161736	0.0817766
chr2	55366313	55366412	1123853	0	-	0.484848	(0.476,0.515]	chr2	120548	19	INTRON	INTRON	CCDC88A	ENSG00000115355.18	ENST00000263630.13:ENST00000436346.7:ENST00000336838.10:ENST00000642200.1:ENST00000413716.7:ENST00000643413.1:ENST00000647401.1:ENST00000645311.1:ENST00000646796.1:ENST00000645571.1:ENST00000645477.1:ENST00000645072.1:ENST00000644890.1:ENST00000644630.1:ENST00000647098.1:ENST00000646324.1:ENST00000642890.1:ENST00000647517.1:ENST00000645031.1:ENST00000645484.1:ENST00000645529.1:ENST00000644033.1:ENST00000644193.1:ENST00000645168.1:ENST00000647341.1:ENST00000430086.1:ENST00000644127.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	31	2	2.38442	3.49922	4.61402	0.0417472	0.00947755	0.161736	0.0817766
chr20	62935795	62935895	7362549	0	-	0.48	(0.476,0.515]	chr20	751216	66	INTRON	INTRON	DIDO1	ENSG00000101191.17	ENST00000266070.8:ENST00000370371.8	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	2.38442	3.49922	4.61402	0.0417472	0.00947755	0.161736	0.0817766
chr6	17843879	17843979	3067106	0	-	0.49	(0.476,0.515]	chr6	285060	59	INTRON	INTRON	KIF13A	ENSG00000137177.20	ENST00000378814.9:ENST00000259711.11:ENST00000378826.6:ENST00000378843.6:ENST00000636847.1	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	2.38442	3.49922	4.61402	0.0417472	0.00947755	0.161736	0.0817766
chr7	139367199	139367298	3437661	0	+	0.474747	(0.44,0.476]	chr7	320318	65	INTRON	INTRON	LUC7L2:FMC1-LUC7L2	ENSG00000146963.18:ENSG00000269955.2	ENST00000541170.7:ENST00000541515.3:ENST00000608368.5:ENST00000619796.4:ENST00000354926.9:ENST00000435096.1:ENST00000456182.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	109	2	2.98981	3.49913	4.00845	2.07309e-4	1.1799e-4	0.0125495	0.00984015
chr7	10761089	10761189	3484391	0	-	0.48	(0.476,0.515]	chr7	325772	1992	INTRON	INTRON	MGC4859	ENSG00000283117.1	ENST00000634803.1	lncRNA	lncRNA	lncRNA	lncRNA	6	167	2	3.33182	3.499105	3.66639	3.7744e-5	7.71007e-6	0.00523787	0.00198226
chr17	81624364	81624463	6849482	0	-	0.454545	(0.44,0.476]	chr17	678237	17	INTRON	INTRON	NPLOC4	ENSG00000182446.14	ENST00000331134.11:ENST00000374747.9:ENST00000574897.5:ENST00000625705.1:ENST00000570300.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	54	2	1.49942	3.4991	5.49878	0.0792118	1.52058e-4	0.199574	0.0106137
chr1	10055056	10055156	19347	0	+	0.43	(0.408,0.44]	chr1	1838	210	INTRON	INTRON	UBE4B	ENSG00000130939.20	ENST00000672724.1:ENST00000253251.12:ENST00000343090.11:ENST00000377153.5	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	2.66579	3.499085	4.33238	0.0218901	0.019342	0.119831	0.11491
chr1	212376593	212376693	633586	0	-	0.43	(0.408,0.44]	chr1	74864	4	SS5_PROX	SS5_PROX:INTRON	PACC1	ENSG00000065600.13	ENST00000261455.9:ENST00000535273.2:ENST00000478166.5:ENST00000467822.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	31	2	2.66579	3.499085	4.33238	0.0218901	0.019342	0.119831	0.11491
chr2	74163127	74163227	1156971	0	-	0.41	(0.408,0.44]	chr2	123703	35	INTRON	INTRON	MOB1A	ENSG00000114978.18	ENST00000396049.5:ENST00000497054.5:ENST00000495286.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	31	2	2.66579	3.499085	4.33238	0.0218901	0.019342	0.119831	0.11491
chr2	96630028	96630126	1181111	0	-	0.428571	(0.408,0.44]	chr2	126509	10	INTRON	INTRON	KANSL3	ENSG00000114982.19	ENST00000354204.10:ENST00000431828.6:ENST00000487070.5:ENST00000447759.5:ENST00000420155.5:ENST00000670907.1:ENST00000666923.1:ENST00000597150.5:ENST00000444759.5:ENST00000452268.5:ENST00000425656.5:ENST00000448075.1:ENST00000451819.5:ENST00000416138.1:ENST00000418735.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	31	2	2.66579	3.499085	4.33238	0.0218901	0.019342	0.119831	0.11491
chr2	135752640	135752740	876042	0	+	0.41	(0.408,0.44]	chr2	98061	39	INTRON	INTRON	UBXN4	ENSG00000144224.17	ENST00000415164.5:ENST00000426921.5:ENST00000272638.14:ENST00000416538.5:ENST00000470687.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	31	2	2.66579	3.499085	4.33238	0.0218901	0.019342	0.119831	0.11491
chr2	159246373	159246473	1249090	0	-	0.44	(0.408,0.44]	chr2	132448	98	INTRON	INTRON	WDSUB1	ENSG00000196151.11	ENST00000359774.9:ENST00000358147.8:ENST00000409990.7:ENST00000392796.7:ENST00000409124.1	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	2.66579	3.499085	4.33238	0.0218901	0.019342	0.119831	0.11491
chr2	216424876	216424975	1015472	0	+	0.414141	(0.408,0.44]	chr2	108093	8	INTRON	INTRON	SMARCAL1	ENSG00000138375.13	ENST00000357276.9:ENST00000358207.9:ENST00000427645.5:ENST00000392128.6:ENST00000412913.1	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	2.66579	3.499085	4.33238	0.0218901	0.019342	0.119831	0.11491
chr21	28982015	28982115	7436585	0	-	0.42	(0.408,0.44]	chr21	758425	3	SS5_PROX	SS5_PROX:INTRON	LTN1	ENSG00000198862.14	ENST00000614971.4:ENST00000389194.7:ENST00000361371.10:ENST00000389195.7:ENST00000483326.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	31	2	2.66579	3.499085	4.33238	0.0218901	0.019342	0.119831	0.11491
chr3	45616077	45616177	1416319	0	+	0.44	(0.408,0.44]	chr3	148600	27	INTRON	INTRON	LIMD1	ENSG00000144791.10	ENST00000465039.5:ENST00000440097.5:ENST00000273317.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	31	2	2.66579	3.499085	4.33238	0.0218901	0.019342	0.119831	0.11491
chr3	184921549	184921644	1583900	0	+	0.431579	(0.408,0.44]	chr3	163986	10	INTRON	INTRON	VPS8	ENSG00000156931.16	ENST00000287546.8:ENST00000625842.3:ENST00000436792.6:ENST00000446204.6:ENST00000492449.5:ENST00000452140.5:ENST00000463687.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	31	2	2.66579	3.499085	4.33238	0.0218901	0.019342	0.119831	0.11491
chr3	186803286	186803385	1889667	0	-	0.434343	(0.408,0.44]	chr3	189042	17	INTRON	INTRON	RFC4	ENSG00000163918.12	ENST00000433496.5:ENST00000392481.6:ENST00000296273.7:ENST00000494047.5:ENST00000418288.5:ENST00000449502.5:ENST00000427785.5:ENST00000448497.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	31	2	2.66579	3.499085	4.33238	0.0218901	0.019342	0.119831	0.11491
chr9	83979452	83979552	4274343	0	-	0.64	(0.57,1]	chr9	393183	6	INTRON	INTRON	HNRNPK	ENSG00000165119.21	ENST00000376281.8:ENST00000376263.8:ENST00000360384.9:ENST00000457156.5:ENST00000472778.5:ENST00000483135.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	89	2	3.16994	3.498885	3.82783	1.01327e-5	3.01424e-6	0.00247779	0.00111586
chr14	103452681	103452780	5826314	0	+	0.646465	(0.57,1]	chr14	552855	3	INTRON	INTRON	MARK3	ENSG00000075413.19	ENST00000678179.1:ENST00000676838.1:ENST00000677348.1:ENST00000677404.1:ENST00000676694.1:ENST00000676938.1:ENST00000678619.1:ENST00000676897.1:ENST00000677214.1:ENST00000677942.1:ENST00000676830.1:ENST00000678999.1:ENST00000677228.1:ENST00000556744.2:ENST00000677104.1:ENST00000679330.1:ENST00000560417.6:ENST00000440884.7:ENST00000676475.1:ENST00000677035.1:ENST00000678022.1:ENST00000677560.1:ENST00000561314.6:ENST00000429436.7:ENST00000677118.1:ENST00000676564.1:ENST00000678169.1:ENST00000678175.1:ENST00000678897.1:ENST00000678278.1:ENST00000676645.1:ENST00000677829.1:ENST00000678302.1:ENST00000677133.1:ENST00000561164.2:ENST00000558223.6:ENST00000559328.6:ENST00000678207.1:ENST00000677360.1:ENST00000676905.1:ENST00000678343.1:ENST00000677347.1:ENST00000678071.1:ENST00000677432.1:ENST00000678237.1:ENST00000677604.1:ENST00000676518.1:ENST00000677051.1:ENST00000677857.1:ENST00000677869.1:ENST00000678423.1:ENST00000560603.6:ENST00000416682.6:ENST00000303622.13:ENST00000216288.11:ENST00000679105.1:ENST00000553942.5:ENST00000335102.9:ENST00000678091.1:ENST00000561071.5:ENST00000558698.5:ENST00000559268.5:ENST00000560731.5:ENST00000676745.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	50	2	3.30588	3.49878	3.69168	2.1608e-4	1.12273e-4	0.0134537	0.00903968
chr16	89344917	89345017	6542126	0	-	0.45	(0.44,0.476]	chr16	634215	12	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000647238.1:ENST00000644045.1:ENST00000643147.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	91	2	3.31275	3.4987399999999997	3.68473	5.47507e-4	1.73222e-4	0.0215463	0.0114086
chr21	14753753	14753839	7430126	0	-	0.372093	(0.35,0.378]	chr21	757883	6	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ENSG00000232884	ENSG00000232884.10	ENST00000673788.1:ENST00000660333.1:ENST00000660772.1:ENST00000665066.1:ENST00000670675.1:ENST00000674136.1:ENST00000658213.1:ENST00000455253.6:ENST00000654377.1:ENST00000454128.3:ENST00000655631.1:ENST00000661285.1	lncRNA	lncRNA	lncRNA	lncRNA	7	225	2	2.81825	3.49868	4.17911	3.60364e-4	1.01518e-7	0.0175741	1.38862e-4
chr11	75413967	75414066	4831976	0	+	0.434343	(0.408,0.44]	chr11	450865	72	INTRON	INTRON	RPS3	ENSG00000149273.15	ENST00000527446.5	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	2.3975	3.498645	4.59979	0.040266	0.0109537	0.161534	0.0873034
chr13	95299044	95299144	5639856	0	-	0.44	(0.408,0.44]	chr13	537181	293	INTRON	INTRON	ABCC4	ENSG00000125257.16	ENST00000645237.2:ENST00000643051.1:ENST00000643842.1:ENST00000646439.1:ENST00000643816.1:ENST00000536256.3:ENST00000643556.1:ENST00000629385.1:ENST00000642524.1:ENST00000645532.1:ENST00000644471.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	31	2	2.3975	3.498645	4.59979	0.040266	0.0109537	0.161534	0.0873034
chr2	23911162	23911262	1080797	0	-	0.42	(0.408,0.44]	chr2	115373	148	INTRON	INTRON	ATAD2B	ENSG00000119778.15	ENST00000238789.10:ENST00000439915.1	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	2.3975	3.498645	4.59979	0.040266	0.0109537	0.161534	0.0873034
chr3	172168255	172168355	1560837	0	+	0.41	(0.408,0.44]	chr3	161551	193	INTRON	INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000421757.5:ENST00000469491.5:ENST00000336824.8:ENST00000423424.5:ENST00000416957.5:ENST00000478016.1:ENST00000443501.1:ENST00000476794.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	31	2	2.3975	3.498645	4.59979	0.040266	0.0109537	0.161534	0.0873034
chr2	182969150	182969249	1285321	0	-	0.333333	(0.32,0.35]	chr2	135354	14	INTRON	INTRON	NCKAP1	ENSG00000061676.15	ENST00000361354.9:ENST00000360982.2	protein_coding	protein_coding	protein_coding	protein_coding	2	49	2	2.6297	3.4986249999999997	4.36755	0.0300552	0.00476699	0.129138	0.0636201
chr1	183493847	183493947	273721	0	+	0.39	(0.378,0.408]	chr1	32019	196	INTRON	INTRON	SMG7	ENSG00000116698.22	ENST00000440812.7:ENST00000367537.7:ENST00000688051.1:ENST00000685780.1:ENST00000508461.5:ENST00000347615.6:ENST00000419169.5:ENST00000444547.6:ENST00000507469.5:ENST00000515829.6:ENST00000367538.1:ENST00000502375.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	34	2	2.2259	3.498475	4.77105	0.0662381	0.00330823	0.181924	0.0527031
chr15	58905976	58906076	6193849	0	-	0.4	(0.378,0.408]	chr15	590088	43	INTRON	INTRON	SLTM	ENSG00000137776.17	ENST00000380516.7:ENST00000492526.5:ENST00000557924.5:ENST00000558756.5:ENST00000249736.11:ENST00000559305.5:ENST00000480144.5:ENST00000628684.2:ENST00000559880.5:ENST00000558486.5:ENST00000560682.5:ENST00000557950.5:ENST00000560532.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	34	2	2.2259	3.498475	4.77105	0.0662381	0.00330823	0.181924	0.0527031
chr3	15682051	15682150	1622634	0	-	0.393939	(0.378,0.408]	chr3	167900	21	INTRON	INTRON	ANKRD28	ENSG00000206560.12	ENST00000399451.6:ENST00000624145.3:ENST00000683139.1:ENST00000412318.5:ENST00000497037.5:ENST00000451422.1:ENST00000463533.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	34	2	2.2259	3.498475	4.77105	0.0662381	0.00330823	0.181924	0.0527031
chr7	6482689	6482789	3478355	0	-	0.27	[0,0.28]	chr7	325475	1	SS3_PROX	SS3_PROX:INTRON	DAGLB:KDELR2	ENSG00000164535.15:ENSG00000136240.10	ENST00000436575.5:ENST00000463747.1:ENST00000258739.9:ENST00000490996.1:ENST00000382267.3:ENST00000462052.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	80	2	1.40573	3.498475	5.59122	0.0578123	0.00247649	0.188564	0.0446195
chr2	55386877	55386977	1124061	0	-	0.57	(0.515,0.57]	chr2	120560	116	INTRON	INTRON	CCDC88A	ENSG00000115355.18	ENST00000263630.13:ENST00000436346.7:ENST00000336838.10:ENST00000642200.1:ENST00000413716.7:ENST00000643413.1:ENST00000647401.1:ENST00000645311.1:ENST00000646796.1:ENST00000645571.1:ENST00000645477.1:ENST00000645072.1:ENST00000644890.1:ENST00000644630.1:ENST00000647098.1:ENST00000646324.1:ENST00000642890.1:ENST00000647517.1:ENST00000645031.1:ENST00000645484.1:ENST00000645529.1:ENST00000644033.1:ENST00000644193.1:ENST00000645168.1:ENST00000647341.1:ENST00000430086.1:ENST00000644127.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	29	2	2.9114	3.4983899999999997	4.08538	0.0253843	0.00826019	0.12011	0.0813266
chr4	105250851	105250951	2011602	0	+	0.54	(0.515,0.57]	chr4	200387	67	INTRON	INTRON	TET2	ENSG00000168769.14	ENST00000513237.5:ENST00000540549.5:ENST00000265149.9:ENST00000380013.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	29	2	2.9114	3.4983899999999997	4.08538	0.0253843	0.00826019	0.12011	0.0813266
chr17	81599068	81599165	6849216	0	-	0.474227	(0.44,0.476]	chr17	678181	14	INTRON	INTRON	NPLOC4	ENSG00000182446.14	ENST00000331134.11:ENST00000374747.9:ENST00000574897.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	42	2	2.39003	3.4982499999999996	4.60647	0.0106488	0.0102339	0.0915714	0.0850389
chr18	12709013	12709113	6875969	0	+	0.4	(0.378,0.408]	chr18	681230	19	INTRON	INTRON	PSMG2	ENSG00000128789.21	ENST00000585331.6:ENST00000586445.5:ENST00000590217.5:ENST00000586587.1:ENST00000317615.11	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	34	2	2.38873	3.49822	4.60771	0.0458857	0.00567576	0.149888	0.0678837
chr19	52619562	52619661	7206414	0	-	0.40404	(0.378,0.408]	chr19	731384	1	INTRON	INTRON	ZNF83	ENSG00000167766.20	ENST00000600714.5:ENST00000601257.5:ENST00000301096.8:ENST00000536937.6:ENST00000597597.1:ENST00000594682.6:ENST00000545872.1:ENST00000597161.6:ENST00000687234.1:ENST00000595939.5:ENST00000596930.5:ENST00000598536.5:ENST00000601140.1:ENST00000595171.5:ENST00000601237.5:ENST00000596440.5:ENST00000602232.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	34	2	2.38873	3.49822	4.60771	0.0458857	0.00567576	0.149888	0.0678837
chr2	101872085	101872185	837830	0	+	0.39	(0.378,0.408]	chr2	94024	4	SS5_PROX	SS5_PROX:INTRON	MAP4K4	ENSG00000071054.17	ENST00000324219.9:ENST00000350878.9:ENST00000425019.6:ENST00000625522.3:ENST00000413150.6:ENST00000634702.1:ENST00000456652.5:ENST00000347699.8:ENST00000417294.5:ENST00000627726.3:ENST00000421882.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	34	2	2.38873	3.49822	4.60771	0.0458857	0.00567576	0.149888	0.0678837
chr6	33397232	33397330	2846992	0	+	0.397959	(0.378,0.408]	chr6	268647	49	INTRON	INTRON	KIFC1	ENSG00000237649.8	ENST00000428849.7:ENST00000450504.1	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	2.38873	3.49822	4.60771	0.0458857	0.00567576	0.149888	0.0678837
chr7	98336571	98336671	3581306	0	-	0.38	(0.378,0.408]	chr7	333573	159	INTRON	INTRON	BAIAP2L1	ENSG00000006453.14	ENST00000005260.9:ENST00000462558.5:ENST00000473569.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	34	2	2.38873	3.49822	4.60771	0.0458857	0.00567576	0.149888	0.0678837
chr7	127813165	127813265	3404022	0	+	0.4	(0.378,0.408]	chr7	318140	52	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000468166.5:ENST00000465900.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	34	2	2.38873	3.49822	4.60771	0.0458857	0.00567576	0.149888	0.0678837
chr8	140633297	140633396	4076544	0	-	0.393939	(0.378,0.408]	chr8	370289	61	INTRON	INTRON	AGO2	ENSG00000123908.12	ENST00000220592.10:ENST00000519980.5:ENST00000523609.5:ENST00000517293.5:ENST00000518019.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	34	2	2.38873	3.49822	4.60771	0.0458857	0.00567576	0.149888	0.0678837
chr7	157242487	157242586	3454999	0	+	0.353535	(0.35,0.378]	chr7	323002	108	INTRON	INTRON	UBE3C	ENSG00000009335.18	ENST00000348165.10:ENST00000470408.5:ENST00000494532.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	119	2	3.09988	3.498205	3.89653	2.61932e-4	1.27379e-4	0.0149313	0.00968882
chr1	202515485	202515584	294459	0	+	0.383838	(0.378,0.408]	chr1	33886	127	INTRON	INTRON	PPP1R12B	ENSG00000077157.22	ENST00000391959.5:ENST00000608999.6:ENST00000290419.9:ENST00000491336.5:ENST00000466273.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	131	2	2.57351	3.4980599999999997	4.42261	7.32287e-4	1.57105e-5	0.0246502	0.00318411
chr16	24783052	24783152	6329753	0	+	0.27	[0,0.28]	chr16	605958	42	INTRON	INTRON	TNRC6A	ENSG00000090905.19	ENST00000395799.8:ENST00000315183.11:ENST00000491718.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	158	2	3.15215	3.49796	3.84377	6.90098e-4	1.8235e-4	0.0240759	0.0117575
chr16	8112505	8112589	6441634	0	-	0.428571	(0.408,0.44]	chr16	620354	2	EXON_LNCRNA	EXON_LNCRNA	ENSG00000260289	ENSG00000260289.2	ENST00000670665.1:ENST00000654046.1:ENST00000567103.2	lncRNA	lncRNA	lncRNA	lncRNA	3	92	2	3.09037	3.49792	3.90547	5.47766e-4	2.03612e-4	0.0212924	0.0129859
chr5	141936412	141936507	2505131	0	+	0.484211	(0.476,0.515]	chr5	239738	15	INTRON	INTRON	DELE1	ENSG00000081791.9	ENST00000194118.8:ENST00000432126.7:ENST00000507481.2	protein_coding	protein_coding	protein_coding	protein_coding	2	71	2	3.19119	3.49787	3.80455	0.00325748	3.04782e-4	0.0524329	0.0161236
chr11	68492267	68492367	4817648	0	+	0.45	(0.44,0.476]	chr11	448907	311	INTRON	INTRON	PPP6R3	ENSG00000110075.15	ENST00000530427.5:ENST00000528635.5:ENST00000529907.5:ENST00000533127.5:ENST00000534534.5:ENST00000529344.5:ENST00000524845.5:ENST00000393800.7:ENST00000265637.8:ENST00000524904.5:ENST00000393801.7:ENST00000265636.9:ENST00000529710.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	109	2	3.04073	3.497735	3.95474	1.55969e-4	1.54083e-4	0.0113252	0.0106835
chr6	169764389	169764486	3036009	0	+	0.42268	(0.408,0.44]	chr6	282976	15	INTRON	INTRON	ERMARD	ENSG00000130023.16	ENST00000366773.8:ENST00000366772.6:ENST00000392095.8:ENST00000418781.7:ENST00000588451.1	protein_coding	protein_coding	protein_coding	protein_coding	2	69	2	3.48793	3.49762	3.50731	0.00130904	8.5918e-4	0.0331539	0.0265787
chr15	28656526	28656606	5988611	0	+	0.3875	(0.378,0.408]	chr15	569358	1	INTRON	INTRON	HERC2P9	ENSG00000206149.11	ENST00000529624.5:ENST00000530420.5:ENST00000528584.5	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript:transcribed_unprocessed_pseudogene	2	74	2	2.90162	3.49754	4.09346	0.0113157	4.66745e-5	0.0886121	0.00555772
chr1	23762947	23763047	401142	0	-	0.52	(0.515,0.57]	chr1	48105	14	INTRON	INTRON	ELOA-AS1	ENSG00000236810.7	ENST00000655402.1:ENST00000427796.6:ENST00000686609.1:ENST00000664563.2:ENST00000652963.1	lncRNA	lncRNA	lncRNA	lncRNA	1	29	2	2.23241	3.497425	4.76244	0.0581268	0.00362147	0.188651	0.0533855
chr22	19092185	19092285	7551712	0	-	0.53	(0.515,0.57]	chr22	771903	23	INTRON	INTRON	DGCR2	ENSG00000070413.20	ENST00000537045.5:ENST00000545799.5:ENST00000263196.12:ENST00000389262.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	29	2	2.23241	3.497425	4.76244	0.0581268	0.00362147	0.188651	0.0533855
chr8	38325634	38325733	3936852	0	-	0.525253	(0.515,0.57]	chr8	360789	41	INTRON	INTRON	NSD3	ENSG00000147548.17	ENST00000317025.13:ENST00000433384.6:ENST00000527502.5:ENST00000316985.7:ENST00000528627.1	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	2.23241	3.497425	4.76244	0.0581268	0.00362147	0.188651	0.0533855
chr12	91395415	91395515	5383166	0	-	0.54	(0.515,0.57]	chr12	513463	251	INTRON	INTRON	ENSG00000289605	ENSG00000289605.1	ENST00000685093.1	lncRNA	lncRNA	lncRNA	lncRNA	4	110	2	3.16455	3.4974100000000004	3.83027	3.23741e-4	9.0334e-6	0.0159645	0.00231495
chr7	24693893	24693993	3291941	0	+	0.39	(0.378,0.408]	chr7	305802	64	UTR3	UTR3:EXON_MRNA	PALS2	ENSG00000105926.16	ENST00000222644.10	protein_coding	protein_coding	protein_coding	protein_coding	3	52	2	2.18512	3.4974	4.80968	0.00902136	0.00679828	0.0851259	0.0711802
chr7	157347752	157347852	3455408	0	+	0.38	(0.378,0.408]	chr7	323052	73	INTRON	INTRON	DNAJB6	ENSG00000105993.15	ENST00000441561.5:ENST00000429029.6:ENST00000262177.9:ENST00000486083.6:ENST00000417758.5:ENST00000459889.5:ENST00000443280.5:ENST00000488001.5:ENST00000441291.5:ENST00000437030.5:ENST00000412557.5:ENST00000453383.5:ENST00000439402.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	52	2	2.18512	3.4974	4.80968	0.00902136	0.00679828	0.0851259	0.0711802
chr6	89835534	89835634	2916500	0	+	0.39	(0.378,0.408]	chr6	275600	38	INTRON	INTRON	CASP8AP2	ENSG00000118412.13	ENST00000552401.5:ENST00000419040.6:ENST00000547893.5:ENST00000237177.10:ENST00000551025.4:ENST00000548224.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	43	2	2.41037	3.49732	4.58427	0.0128325	0.0100185	0.0926667	0.0880217
chr7	6055790	6055888	3476217	0	-	0.520408	(0.515,0.57]	chr7	325245	7	INTRON	INTRON	EIF2AK1	ENSG00000086232.13	ENST00000199389.11:ENST00000431744.5:ENST00000463213.5:ENST00000446699.1:ENST00000461493.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	40	2	2.68132	3.4972899999999996	4.31326	0.0141817	0.00324198	0.0959618	0.0524329
chr1	157044612	157044706	569565	0	-	0.37234	(0.35,0.378]	chr1	68661	4	UTR5	UTR5:EXON_MRNA	ARHGEF11	ENSG00000132694.19	ENST00000368194.8:ENST00000361409.2	protein_coding	protein_coding	protein_coding	protein_coding	2	74	2	3.37175	3.497235	3.62272	0.00236696	5.64719e-4	0.043778	0.021704
chr9	130739054	130739154	4214115	0	+	0.45	(0.44,0.476]	chr9	386427	242	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000393293.4	protein_coding	protein_coding	protein_coding	protein_coding	12	349	2	3.4377	3.49722	3.55674	1.2501e-6	3.64965e-7	6.49605e-4	3.34811e-4
chr13	95179282	95179381	5638644	0	-	0.464646	(0.44,0.476]	chr13	537109	8	INTRON	INTRON	ABCC4	ENSG00000125257.16	ENST00000645237.2:ENST00000643051.1:ENST00000643842.1:ENST00000646439.1:ENST00000643816.1:ENST00000536256.3:ENST00000643556.1:ENST00000629385.1:ENST00000642524.1:ENST00000645532.1:ENST00000644471.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	53	2	2.38763	3.4970499999999998	4.60647	0.0102339	0.00394089	0.0850389	0.0573041
chr17	63562781	63562881	6659774	0	+	0.36	(0.35,0.378]	chr17	649766	97	INTRON	INTRON	DCAF7	ENSG00000136485.16	ENST00000431926.7:ENST00000690417.1:ENST00000688972.1:ENST00000686337.1:ENST00000614556.5:ENST00000690481.1:ENST00000693226.1:ENST00000686787.1:ENST00000691063.1:ENST00000415273.2:ENST00000688437.1:ENST00000615512.2:ENST00000688888.1:ENST00000691458.1:ENST00000692877.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	35	2	2.24535	3.496975	4.7486	0.0647516	0.00418965	0.179192	0.0591344
chr2	101753626	101753726	836618	0	+	0.37	(0.35,0.378]	chr2	93900	547	INTRON	INTRON	MAP4K4	ENSG00000071054.17	ENST00000427603.5:ENST00000324219.9:ENST00000350878.9:ENST00000425019.6:ENST00000625522.3:ENST00000413150.6:ENST00000634702.1:ENST00000456652.5:ENST00000347699.8:ENST00000417294.5	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	2.24535	3.496975	4.7486	0.0647516	0.00418965	0.179192	0.0591344
chr19	18836682	18836781	7033367	0	+	0.353535	(0.35,0.378]	chr19	700970	30	INTRON	INTRON	UPF1	ENSG00000005007.13	ENST00000262803.10:ENST00000599848.5:ENST00000601981.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	50	2	2.32464	3.4969650000000003	4.66929	0.0159285	0.00541617	0.101453	0.066545000000000007
chr20	41030454	41030553	7273522	0	+	0.313131	(0.28,0.32]	chr20	739216	6	INTRON	INTRON	TOP1	ENSG00000198900.7	ENST00000361337.3:ENST00000681113.1:ENST00000681058.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	140	2	3.25767	3.4969650000000003	3.73626	7.58796e-4	7.391e-5	0.025219	0.00716288
chr12	1726631	1726731	5064524	0	+	0.37	(0.35,0.378]	chr12	477866	233	INTRON	INTRON	ADIPOR2	ENSG00000006831.10	ENST00000537545.1:ENST00000357103.5:ENST00000540974.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	35	2	2.32443	3.49686	4.66929	0.0544216	0.00541617	0.164972	0.066545000000000007
chr13	52515150	52515250	5504547	0	+	0.36	(0.35,0.378]	chr13	526730	3	SS5_PROX	SS5_PROX:INTRON	TPTE2P3	ENSG00000244471.6	ENST00000418237.6:ENST00000441562.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	1	35	2	2.32443	3.49686	4.66929	0.0544216	0.00541617	0.164972	0.066545000000000007
chr16	14544529	14544628	6448964	0	-	0.353535	(0.35,0.378]	chr16	621213	32	INTRON	INTRON	PARN	ENSG00000140694.17	ENST00000651865.1:ENST00000437198.7:ENST00000651348.1:ENST00000650990.1:ENST00000651760.1:ENST00000652541.1:ENST00000652727.1:ENST00000652066.1:ENST00000651300.1:ENST00000420015.6:ENST00000652051.1:ENST00000341484.11:ENST00000539279.5:ENST00000651049.1:ENST00000650960.1:ENST00000651634.1:ENST00000564113.6:ENST00000564904.5:ENST00000652411.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	35	2	2.32443	3.49686	4.66929	0.0544216	0.00541617	0.164972	0.066545000000000007
chr6	37386846	37386946	2856419	0	+	0.37	(0.35,0.378]	chr6	270073	51	INTRON	INTRON	RNF8	ENSG00000112130.17	ENST00000373479.9:ENST00000229866.10:ENST00000469731.5:ENST00000498460.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	35	2	2.32443	3.49686	4.66929	0.0544216	0.00541617	0.164972	0.066545000000000007
chr15	22497167	22497266	5974538	0	+	0.363636	(0.35,0.378]	chr15	568077	11	INTRON	INTRON	HERC2P2	ENSG00000276550.5	ENST00000613386.4	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	1	33	2	2.79643	3.496765	4.1971	0.0367539	0.013543	0.138959	0.101363
chr15	66514848	66514936	6050409	0	+	0.375	(0.35,0.378]	chr15	576126	4	INTRON	INTRON	ZWILCH	ENSG00000174442.12	ENST00000535141.6:ENST00000613446.4:ENST00000446801.6:ENST00000565627.5:ENST00000563698.5:ENST00000564179.5:ENST00000567926.5:ENST00000307897.10:ENST00000565960.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	33	2	2.79643	3.496765	4.1971	0.0367539	0.013543	0.138959	0.101363
chr5	139354180	139354280	2499906	0	+	0.36	(0.35,0.378]	chr5	238989	104	INTRON	INTRON	PAIP2	ENSG00000120727.13	ENST00000507755.5:ENST00000265192.9:ENST00000510409.1:ENST00000511381.1:ENST00000511706.5:ENST00000507415.1:ENST00000394795.6:ENST00000510080.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	33	2	2.79643	3.496765	4.1971	0.0367539	0.013543	0.138959	0.101363
chr14	50426675	50426774	5889430	0	-	0.383838	(0.378,0.408]	chr14	559114	3	INTRON	INTRON	MAP4K5	ENSG00000012983.12	ENST00000554990.6:ENST00000682126.1:ENST00000013125.9:ENST00000557390.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	43	2	1.81685	3.4965599999999997	5.17627	0.0597868	0.00208234	0.189982	0.0411801
chr6	136667792	136667891	3234386	0	-	0.40404	(0.378,0.408]	chr6	300658	81	INTRON	INTRON	MAP3K5	ENSG00000197442.10	ENST00000359015.5	protein_coding	protein_coding	protein_coding	protein_coding	2	43	2	1.81685	3.4965599999999997	5.17627	0.0597868	0.00208234	0.189982	0.0411801
chr22	36515481	36515580	7585677	0	-	0.363636	(0.35,0.378]	chr22	776293	25	INTRON	INTRON	EIF3D	ENSG00000100353.18	ENST00000216190.13:ENST00000405442.5:ENST00000426531.5:ENST00000458572.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	51	2	2.4077	3.496535	4.58537	0.0122026	0.00703328	0.0910127	0.0754576
chr2	95939705	95939801	1179204	0	-	0.333333	(0.32,0.35]	chr2	126015	3	INTRON	INTRON	ANKRD36C	ENSG00000174501.15	ENST00000295246.7:ENST00000456556.5:ENST00000534304.5:ENST00000528268.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	171	2	3.34211	3.49652	3.65093	7.34376e-5	3.65896e-5	0.00767614	0.00484751
chrX	129805474	129805573	7885825	0	-	0.414141	(0.408,0.44]	chrX	802940	23	UTR3	UTR3:EXON_MRNA	ZDHHC9	ENSG00000188706.13	ENST00000357166.11:ENST00000371064.7	protein_coding	protein_coding	protein_coding	protein_coding	3	50	2	2.03431	3.4962400000000002	4.95817	0.0154896	0.00372419	0.108998	0.0535094
chr1	108607146	108607244	177735	0	+	0.469388	(0.44,0.476]	chr1	19295	5	INTRON	INTRON	FAM102B	ENSG00000162636.16	ENST00000405454.1:ENST00000370035.8	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	2.20949	3.4962100000000005	4.78293	0.0672585	0.00292033	0.183051	0.0494641
chr12	132800768	132800867	5449929	0	-	0.474747	(0.44,0.476]	chr12	522063	19	INTRON	INTRON	GOLGA3	ENSG00000090615.16	ENST00000204726.9:ENST00000450791.8:ENST00000693666.1:ENST00000688114.1:ENST00000687190.1:ENST00000690511.1:ENST00000685283.1:ENST00000691696.1:ENST00000691636.1:ENST00000690897.1:ENST00000690465.1:ENST00000456883.7:ENST00000692253.1:ENST00000687502.1:ENST00000688772.1:ENST00000687479.1:ENST00000690709.1:ENST00000545875.4:ENST00000688251.1:ENST00000690573.1:ENST00000685195.1:ENST00000686425.1:ENST00000693437.1:ENST00000692831.1:ENST00000688068.1:ENST00000692951.1:ENST00000689441.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	33	2	2.20949	3.4962100000000005	4.78293	0.0672585	0.00292033	0.183051	0.0494641
chr20	10609616	10609716	7241624	0	+	0.47	(0.44,0.476]	chr20	735193	74	INTRON	INTRON	SLX4IP	ENSG00000149346.15	ENST00000334534.10:ENST00000488816.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	33	2	2.20949	3.4962100000000005	4.78293	0.0672585	0.00292033	0.183051	0.0494641
chr20	62889364	62889462	7362058	0	-	0.459184	(0.44,0.476]	chr20	751131	23	UTR3	UTR3:EXON_MRNA:INTRON	DIDO1	ENSG00000101191.17	ENST00000266070.8:ENST00000395343.6:ENST00000395340.5	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	2.20949	3.4962100000000005	4.78293	0.0672585	0.00292033	0.183051	0.0494641
chr6	151043361	151043461	2999670	0	+	0.47	(0.44,0.476]	chr6	280643	14	INTRON	INTRON	MTHFD1L	ENSG00000120254.16	ENST00000611279.4:ENST00000367321.8:ENST00000618312.4	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	2.20949	3.4962100000000005	4.78293	0.0672585	0.00292033	0.183051	0.0494641
chr9	63851717	63851817	4262482	0	-	0.45	(0.44,0.476]	chr9	392235	84	INTRON	INTRON	FRG1JP	ENSG00000215548.2	ENST00000376334.3	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	1	33	2	2.20949	3.4962100000000005	4.78293	0.0672585	0.00292033	0.183051	0.0494641
chr4	76131474	76131569	2164266	0	-	0.284211	(0.28,0.32]	chr4	213459	3	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	NUP54	ENSG00000138750.16	ENST00000695546.1:ENST00000695547.1:ENST00000695552.1:ENST00000507257.6:ENST00000264883.8:ENST00000510569.6:ENST00000515460.6:ENST00000695554.1:ENST00000695553.1:ENST00000695548.1:ENST00000695551.1:ENST00000695556.1:ENST00000695549.1:ENST00000695550.1:ENST00000695555.1:ENST00000514313.2:ENST00000514987.6:ENST00000502850.5:ENST00000508465.6:ENST00000512151.5:ENST00000504173.1:ENST00000695557.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	86	2	3.12332	3.49618	3.86904	0.00698537	2.33993e-4	0.0718189	0.0135358
chr3	170116338	170116435	1861164	0	-	0.484536	(0.476,0.515]	chr3	186608	25	INTRON	INTRON	PHC3	ENSG00000173889.16	ENST00000495893.7:ENST00000494943.5:ENST00000467570.5	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	2.13854	3.496165	4.85379	0.0776563	0.00234214	0.196285	0.0442989
chr10	50369617	50369716	4618141	0	-	0.343434	(0.32,0.35]	chr10	425422	249	INTRON	INTRON	SGMS1	ENSG00000198964.14	ENST00000429490.5:ENST00000361781.7:ENST00000619438.4:ENST00000492601.2:ENST00000609445.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	50	2	1.99307	3.4961450000000003	4.99922	0.04271	0.00223907	0.148082	0.0435144
chr1	42245142	42245241	431530	0	-	0.40404	(0.378,0.408]	chr1	52311	168	INTRON	INTRON	FOXJ3	ENSG00000198815.9	ENST00000372573.5:ENST00000372572.5:ENST00000361776.5:ENST00000545068.5:ENST00000361346.6:ENST00000445886.5	protein_coding	protein_coding	protein_coding	protein_coding	2	71	2	3.19368	3.496125	3.79857	0.00426861	2.23525e-4	0.0573912	0.0131533
chr1	174250932	174251032	258028	0	+	0.55	(0.515,0.57]	chr1	30766	3	SS5_PROX	SS5_PROX:INTRON	RABGAP1L	ENSG00000152061.24	ENST00000357444.10:ENST00000251507.8:ENST00000681986.1:ENST00000457696.1	protein_coding	protein_coding	protein_coding	protein_coding	2	61	2	3.25412	3.496105	3.73809	0.00224554	3.11298e-4	0.0435144	0.0162055
chr3	185936422	185936522	1886588	0	-	0.41	(0.408,0.44]	chr3	188644	21	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:INTRON	TRA2B	ENSG00000136527.19	ENST00000453386.7:ENST00000487615.5:ENST00000456380.5:ENST00000382191.4:ENST00000465245.1:ENST00000485530.5:ENST00000471134.1:ENST00000480461.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	232	2	3.34562	3.496095	3.64657	6.21657e-6	3.48759e-6	0.00187031	0.00120947
chr17	62009854	62009951	6810316	0	-	0.329897	(0.32,0.35]	chr17	672913	25	INTRON	INTRON	MED13	ENSG00000108510.10	ENST00000397786.7	protein_coding	protein_coding	protein_coding	protein_coding	3	106	2	3.41232	3.496055	3.57979	0.00118589	1.30505e-4	0.0315652	0.00983066
chr8	25449781	25449879	3926261	0	-	0.285714	(0.28,0.32]	chr8	359451	32	INTRON	INTRON	KCTD9	ENSG00000104756.16	ENST00000221200.9:ENST00000519665.5:ENST00000523140.5:ENST00000522493.5:ENST00000518067.5:ENST00000518997.5:ENST00000523294.5:ENST00000521458.5:ENST00000524217.1:ENST00000520405.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	48	2	2.1895	3.496025	4.80255	0.0227063	0.0137406	0.124921	0.0949306
chr21	44870088	44870186	7469092	0	-	0.479592	(0.476,0.515]	chr21	761251	41	INTRON	INTRON	PTTG1IP	ENSG00000183255.12	ENST00000397887.7:ENST00000445724.3:ENST00000330938.8:ENST00000494690.5:ENST00000480234.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	169	2	3.46552	3.495985	3.52645	8.15975e-5	3.0704e-6	0.00810741	0.00113025
chr13	99248320	99248420	5524915	0	+	0.41	(0.408,0.44]	chr13	528241	33	INTRON	INTRON	UBAC2	ENSG00000134882.16	ENST00000355700.9:ENST00000403766.8:ENST00000468067.5:ENST00000473091.5:ENST00000376440.6:ENST00000494576.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	50	2	1.69566	3.49589	5.29612	0.0453922	0.00113523	0.164236	0.0307488
chr11	9171263	9171360	4908115	0	-	0.463918	(0.44,0.476]	chr11	460057	6	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	DENND5A	ENSG00000184014.9	ENST00000328194.8:ENST00000681203.1:ENST00000530780.2:ENST00000680358.1:ENST00000679999.1:ENST00000679458.1:ENST00000680470.1:ENST00000680599.1:ENST00000680554.1:ENST00000679745.1:ENST00000679926.1:ENST00000680252.1:ENST00000681425.1:ENST00000681158.1:ENST00000679460.1:ENST00000679568.1:ENST00000679446.1:ENST00000680294.1:ENST00000680742.1:ENST00000680885.1:ENST00000680576.1:ENST00000530044.5:ENST00000527700.5:ENST00000526707.5:ENST00000681173.1:ENST00000527896.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	33	2	2.46135	3.495845	4.53034	0.0374637	0.00672609	0.140008	0.0738715
chr16	3395799	3395898	6433726	0	-	0.474747	(0.44,0.476]	chr16	619239	16	INTRON	INTRON	ZSCAN32	ENSG00000140987.21	ENST00000618425.4:ENST00000304926.7:ENST00000396852.9:ENST00000576500.5:ENST00000439568.2:ENST00000574940.5:ENST00000422427.6:ENST00000574084.1:ENST00000573830.1:ENST00000573719.1:ENST00000571906.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	33	2	2.46135	3.495845	4.53034	0.0374637	0.00672609	0.140008	0.0738715
chr2	232703789	232703889	1037302	0	+	0.45	(0.44,0.476]	chr2	110611	3	SS5_PROX	SS5_PROX:INTRON	GIGYF2	ENSG00000204120.16	ENST00000476995.5:ENST00000629305.2:ENST00000427233.5:ENST00000428883.5:ENST00000409480.5:ENST00000456491.5:ENST00000484409.1:ENST00000492910.5:ENST00000373563.9:ENST00000409547.5:ENST00000430720.5:ENST00000425040.5:ENST00000421433.5:ENST00000475359.6:ENST00000490612.5:ENST00000464402.5:ENST00000488629.5:ENST00000423659.5:ENST00000409196.7:ENST00000488734.5:ENST00000409451.7:ENST00000474465.5:ENST00000463554.5:ENST00000440945.5:ENST00000429187.5:ENST00000482666.5:ENST00000490229.5:ENST00000483164.5:ENST00000464805.5:ENST00000489328.1:ENST00000424038.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	33	2	2.46135	3.495845	4.53034	0.0374637	0.00672609	0.140008	0.0738715
chr3	152356707	152356807	1535868	0	+	0.47	(0.44,0.476]	chr3	160003	211	INTRON	INTRON	MBNL1	ENSG00000152601.18	ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000495875.6:ENST00000324210.10:ENST00000493459.5:ENST00000459747.1:ENST00000460591.5:ENST00000545754.5:ENST00000357472.7:ENST00000324196.9:ENST00000498502.5:ENST00000463374.5:ENST00000485910.5:ENST00000465907.6:ENST00000492948.5:ENST00000485509.5:ENST00000464596.5	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	2.46135	3.495845	4.53034	0.0374637	0.00672609	0.140008	0.0738715
chr4	109437583	109437683	2018608	0	+	0.47	(0.44,0.476]	chr4	200748	32	INTRON	INTRON	SEC24B	ENSG00000138802.11	ENST00000504968.6:ENST00000399100.6:ENST00000265175.5	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	2.46135	3.495845	4.53034	0.0374637	0.00672609	0.140008	0.0738715
chr7	148840190	148840289	3670319	0	-	0.30303	(0.28,0.32]	chr7	340616	28	INTRON	INTRON	EZH2	ENSG00000106462.12	ENST00000683292.1:ENST00000320356.7:ENST00000492143.5:ENST00000478654.5:ENST00000350995.6:ENST00000460911.5:ENST00000683744.1:ENST00000682317.1:ENST00000682263.1:ENST00000684300.1:ENST00000476773.5:ENST00000483967.5:ENST00000498186.5:ENST00000483012.1:ENST00000682401.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	191	2	2.48171	3.495805	4.5099	4.96166e-4	2.24159e-5	0.0201536	0.00386794
chr3	14475209	14475308	1370139	0	+	0.515152	(0.476,0.515]	chr3	144379	25	INTRON	INTRON	SLC6A6	ENSG00000131389.18	ENST00000613060.4:ENST00000618278.4:ENST00000610642.4:ENST00000649500.1:ENST00000622186.5:ENST00000452151.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	50	2	1.68092	3.49575	5.31058	0.0474026	9.15544e-4	0.169265	0.0278396
chr17	82185559	82185656	6852169	0	-	0.43299	(0.408,0.44]	chr17	679037	5	INTRON	INTRON	CCDC57	ENSG00000176155.21	ENST00000694881.1:ENST00000389641.9:ENST00000694882.1:ENST00000665763.1:ENST00000578910.2:ENST00000392343.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	148	2	3.22977	3.4957399999999996	3.76171	5.1576e-5	2.44358e-5	0.00585477	0.00406051
chr2	8967394	8967494	1063205	0	-	0.42	(0.408,0.44]	chr2	113381	84	INTRON	INTRON	MBOAT2	ENSG00000143797.12	ENST00000305997.8:ENST00000486484.5:ENST00000477073.5:ENST00000462696.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	42	2	2.39162	3.495705	4.59979	0.0109537	0.0105837	0.0911864	0.0873034
chr2	53967846	53967946	1120547	0	-	0.29	(0.28,0.32]	chr2	120102	182	INTRON	INTRON	PSME4	ENSG00000068878.15	ENST00000404125.6:ENST00000389993.7:ENST00000481518.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	74	2	1.59898	3.4956650000000002	5.39235	0.030453	0.0024844	0.143385	0.0446195
chr19	52087646	52087745	7205787	0	-	0.484848	(0.476,0.515]	chr19	731304	24	INTRON	INTRON	ZNF432:ZNF841	ENSG00000256087.7:ENSG00000197608.12	ENST00000598446.1:ENST00000594440.6:ENST00000426391.6:ENST00000594295.5:ENST00000599430.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	42	2	2.37731	3.495665	4.61402	0.0111793	0.00947755	0.0937192	0.0817766
chr9	35058679	35058775	4247322	0	-	0.510417	(0.476,0.515]	chr9	390733	13	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	VCP	ENSG00000165280.18	ENST00000679902.1:ENST00000678465.1:ENST00000677257.1:ENST00000679800.1:ENST00000678018.1:ENST00000678650.1:ENST00000448530.6:ENST00000358901.11:ENST00000679647.1:ENST00000681335.1:ENST00000417448.2:ENST00000680916.1:ENST00000679599.1:ENST00000679862.1:ENST00000681690.1:ENST00000679204.2:ENST00000676836.2:ENST00000493886.5:ENST00000479300.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	42	2	2.37731	3.495665	4.61402	0.0111793	0.00947755	0.0937192	0.0817766
chr7	74181381	74181479	3332296	0	+	0.316327	(0.28,0.32]	chr7	310032	16	INTRON	INTRON	EIF4H	ENSG00000106682.16	ENST00000678438.1:ENST00000489484.5:ENST00000677998.1:ENST00000495187.2:ENST00000265753.13:ENST00000353999.6:ENST00000677570.1:ENST00000677681.1:ENST00000678815.1:ENST00000679266.1:ENST00000679287.1:ENST00000479338.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	48	2	1.83771	3.4956449999999997	5.15358	0.0591725	0.0052282	0.189982	0.0633615
chr19	9817250	9817350	7134021	0	-	0.38	(0.378,0.408]	chr19	719005	22	INTRON	INTRON	FBXL12	ENSG00000127452.9	ENST00000589626.5:ENST00000586651.5:ENST00000247977.9:ENST00000588922.5:ENST00000585379.5:ENST00000592732.5:ENST00000589438.1:ENST00000592067.1:ENST00000590808.1:ENST00000590277.1:ENST00000586469.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	72	2	3.3797	3.49564	3.61158	0.00154501	8.34292e-4	0.0362716	0.0266389
chr16	23641690	23641790	6323236	0	+	0.51	(0.476,0.515]	chr16	605579	1	SS5_PROX	SS5_PROX:INTRON	DCTN5	ENSG00000166847.10	ENST00000300087.7:ENST00000563998.5:ENST00000566053.5:ENST00000568589.5:ENST00000563188.5:ENST00000568272.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	33	2	2.56033	3.4956300000000002	4.43093	0.0287634	0.00931369	0.127066	0.0855292
chr18	55919638	55919738	6910291	0	+	0.51	(0.476,0.515]	chr18	684213	258	INTRON	INTRON	ENSG00000267327	ENSG00000267327.2	ENST00000589440.1	lncRNA	lncRNA	lncRNA	lncRNA	1	33	2	2.56033	3.4956300000000002	4.43093	0.0287634	0.00931369	0.127066	0.0855292
chr21	6656919	6657019	7425741	0	-	0.49	(0.476,0.515]	chr21	757494	187	INTRON	INTRON	ENSG00000280145	ENSG00000280145.3	ENST00000625185.3:ENST00000623106.3:ENST00000624846.3:ENST00000623313.1:ENST00000624965.1	lncRNA	lncRNA	lncRNA	lncRNA	1	33	2	2.56033	3.4956300000000002	4.43093	0.0287634	0.00931369	0.127066	0.0855292
chr5	109694446	109694546	2449056	0	+	0.48	(0.476,0.515]	chr5	234584	35	INTRON	INTRON	MAN2A1	ENSG00000112893.10	ENST00000261483.5	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	2.56033	3.4956300000000002	4.43093	0.0287634	0.00931369	0.127066	0.0855292
chr7	32498396	32498496	3303262	0	+	0.48	(0.476,0.515]	chr7	306758	22	INTRON	INTRON	AVL9	ENSG00000105778.20	ENST00000485228.1:ENST00000318709.9:ENST00000459629.1:ENST00000409301.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	33	2	2.56033	3.4956300000000002	4.43093	0.0287634	0.00931369	0.127066	0.0855292
chr11	47468430	47468530	4949524	0	-	0.42	(0.408,0.44]	chr11	464136	26	UTR3	UTR3:EXON_MRNA	CELF1	ENSG00000149187.19	ENST00000310513.10:ENST00000687097.1:ENST00000395290.6:ENST00000358597.7:ENST00000395292.6	protein_coding	protein_coding	protein_coding	protein_coding	4	114	2	3.39559	3.4955749999999997	3.59556	8.33275e-4	1.84129e-5	0.0266389	0.00328489
chr10	50465393	50465493	4619103	0	-	0.22	[0,0.28]	chr10	425440	42	INTRON	INTRON	SGMS1	ENSG00000198964.14	ENST00000429490.5:ENST00000361781.7:ENST00000619438.4:ENST00000609445.5:ENST00000498514.5:ENST00000608287.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	42	2	2.20927	3.495345	4.78142	0.0794763	0.00943974	0.19979	0.0861183
chr2	170011540	170011640	910016	0	+	0.26	[0,0.28]	chr2	100389	22	INTRON	INTRON	UBR3	ENSG00000144357.18	ENST00000272793.11:ENST00000430321.5:ENST00000392632.6:ENST00000439681.1:ENST00000444475.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	42	2	2.20927	3.495345	4.78142	0.0794763	0.00943974	0.19979	0.0861183
chr10	124784551	124784650	4712474	0	-	0.252525	[0,0.28]	chr10	434817	94	INTRON	INTRON	EEF1AKMT2	ENSG00000203791.15	ENST00000652548.1:ENST00000466270.5:ENST00000368836.7:ENST00000464099.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	63	2	1.88025	3.4952900000000002	5.11033	0.029906	0.00991388	0.142135	0.0838372
chr5	104278677	104278777	2443202	0	+	0.3	(0.28,0.32]	chr5	234410	1734	INTRON	INTRON	LINC02163	ENSG00000251026.2	ENST00000662211.1:ENST00000666145.1	lncRNA	lncRNA	lncRNA	lncRNA	2	53	2	1.96376	3.4952099999999997	5.02666	0.0480066	0.0027935	0.153019	0.0488769
chrX	109703884	109703984	7861406	0	-	0.31	(0.28,0.32]	chrX	801455	73	INTRON	INTRON	ACSL4	ENSG00000068366.21	ENST00000469796.7:ENST00000672401.1:ENST00000348502.10:ENST00000340800.7:ENST00000684030.1:ENST00000682031.1:ENST00000671846.1:ENST00000672282.1:ENST00000502391.6:ENST00000684414.1:ENST00000673016.1:ENST00000508092.5:ENST00000504383.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	53	2	1.96376	3.4952099999999997	5.02666	0.0480066	0.0027935	0.153019	0.0488769
chr8	48010670	48010770	3752259	0	+	0.49	(0.476,0.515]	chr8	349044	17	INTRON	INTRON	UBE2V2	ENSG00000169139.12	ENST00000523432.5:ENST00000521346.5:ENST00000523111.7:ENST00000518360.5:ENST00000517630.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	42	2	1.8388	3.495115	5.15143	0.0564473	0.00166579	0.184423	0.0369207
chr10	63460298	63460398	4635335	0	-	0.43	(0.408,0.44]	chr10	426236	795	INTRON	INTRON	JMJD1C	ENSG00000171988.20	ENST00000399262.7:ENST00000633035.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	42	2	1.85305	3.4950349999999997	5.13702	0.0543543	0.00202889	0.182243	0.04086
chr2	9588926	9589024	1064559	0	-	0.408163	(0.378,0.408]	chr2	113592	2	INTRON	INTRON	YWHAQ	ENSG00000134308.14	ENST00000238081.8:ENST00000381844.8:ENST00000474715.1:ENST00000446619.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	46	2	2.00398	3.4949250000000003	4.98587	0.0393906	0.00152268	0.143072	0.0360297
chr21	10469636	10469735	7368696	0	+	0.434343	(0.408,0.44]	chr21	751997	43	INTRON	INTRON	BAGE2	ENSG00000187172.15	ENST00000470054.5:ENST00000496773.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	4	62	2	1.53812	3.494825	5.45153	0.0501609	1.89064e-4	0.156383	0.0119565
chr11	3766500	3766599	4894855	0	-	0.50505	(0.476,0.515]	chr11	458890	31	INTRON	INTRON	NUP98	ENSG00000110713.17	ENST00000359171.8:ENST00000324932.12:ENST00000650171.1:ENST00000355260.7:ENST00000397004.8:ENST00000397007.8:ENST00000397013.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	57	2	1.78315	3.4948	5.20645	0.0215899	0.00136049	0.123836	0.0336321
chr1	19091632	19091730	385510	0	-	0.387755	(0.378,0.408]	chr1	45644	23	INTRON	INTRON	UBR4	ENSG00000127481.15	ENST00000375254.8:ENST00000375224.1	protein_coding	protein_coding	protein_coding	protein_coding	4	127	2	3.44197	3.494665	3.54736	1.52249e-4	4.84094e-5	0.0112857	0.00567485
chr14	100350311	100350410	5968632	0	-	0.444444	(0.44,0.476]	chr14	567074	31	INTRON	INTRON	WARS1	ENSG00000140105.18	ENST00000392882.7:ENST00000358655.8:ENST00000355338.6:ENST00000344102.9:ENST00000557135.5:ENST00000556645.5:ENST00000554950.1:ENST00000553395.5:ENST00000556504.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	60	2	2.15726	3.49464	4.83202	0.00525002	0.00508124	0.0646039	0.0633615
chr2	135853215	135853315	1233648	0	-	0.51	(0.476,0.515]	chr2	131286	3	SS3_PROX	SS3_PROX:INTRON	MCM6	ENSG00000076003.5	ENST00000264156.3:ENST00000492091.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	62	2	1.75142	3.494555	5.23769	0.0259024	5.17244e-4	0.121522	0.0203753
chr19	11153228	11153327	7136953	0	-	0.484848	(0.476,0.515]	chr19	719808	35	INTRON	INTRON	SPC24	ENSG00000161888.12	ENST00000585567.5:ENST00000592540.6:ENST00000591396.5:ENST00000592967.5:ENST00000423327.2:ENST00000586708.1:ENST00000585486.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	54	2	1.93059	3.49453	5.05847	0.023762	0.00108081	0.118822	0.0300133
chr1	219188595	219188694	318525	0	+	0.282828	(0.28,0.32]	chr1	36451	88	INTRON	INTRON	LYPLAL1	ENSG00000143353.12	ENST00000460522.5:ENST00000366927.3:ENST00000496776.5:ENST00000366928.10:ENST00000477938.5:ENST00000463964.5:ENST00000483635.5:ENST00000474379.5:ENST00000469590.5:ENST00000478794.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	69	2	2.00031	3.494515	4.98872	0.0110488	0.00838468	0.0928193	0.0774402
chr16	89343282	89343382	6542109	0	-	0.35	(0.32,0.35]	chr16	634212	2	SS5_PROX	SS5_PROX:INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000647238.1:ENST00000644045.1:ENST00000643147.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	63	2	1.80487	3.49451	5.18415	0.0210603	0.00333629	0.122559	0.0512081
chr21	39405116	39405215	7410246	0	+	0.333333	(0.32,0.35]	chr21	755183	74	INTRON	INTRON	GET1	ENSG00000182093.16	ENST00000415847.3:ENST00000623703.3:ENST00000647911.1:ENST00000649100.1:ENST00000649499.1:ENST00000650208.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	63	2	1.80487	3.49451	5.18415	0.0210603	0.00333629	0.122559	0.0512081
chr10	73065852	73065952	4647531	0	-	0.25	[0,0.28]	chr10	427530	119	INTRON	INTRON	P4HA1	ENSG00000122884.13	ENST00000394890.7:ENST00000307116.6:ENST00000373008.6:ENST00000440381.5:ENST00000263556.3	protein_coding	protein_coding	protein_coding	protein_coding	3	136	2	2.48772	3.494415	4.50111	0.0125761	1.3585e-5	0.0926667	0.00275435
chr1	150396009	150396109	222015	0	+	0.4	(0.378,0.408]	chr1	25051	307	INTRON	INTRON	RPRD2	ENSG00000163125.16	ENST00000492220.1:ENST00000369068.5:ENST00000401000.8:ENST00000369067.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	51	2	2.04622	3.49436	4.9425	0.0149927	0.00452675	0.107704	0.0595107
chr1	235201102	235201202	662576	0	-	0.38	(0.378,0.408]	chr1	78465	46	INTRON	INTRON	ARID4B	ENSG00000054267.22	ENST00000349213.7:ENST00000366603.6:ENST00000264183.9:ENST00000421364.5:ENST00000491632.5:ENST00000444620.2:ENST00000471257.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	42	2	2.11103	3.494325	4.87762	0.0266911	0.00553849	0.134419	0.0648867
chr15	84675325	84675425	6251611	0	-	0.39	(0.378,0.408]	chr15	596648	16	INTRON	INTRON	SEC11A	ENSG00000140612.14	ENST00000559729.5:ENST00000268220.12:ENST00000560266.5:ENST00000558134.5:ENST00000558217.5:ENST00000455959.7:ENST00000560409.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	42	2	2.11103	3.494325	4.87762	0.0266911	0.00553849	0.134419	0.0648867
chr17	64513040	64513138	6661955	0	+	0.397959	(0.378,0.408]	chr17	650192	24	INTRON	INTRON	CEP95	ENSG00000258890.8	ENST00000579860.5:ENST00000580188.1:ENST00000556440.7:ENST00000581056.5:ENST00000553956.6:ENST00000582724.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	42	2	2.11103	3.494325	4.87762	0.0266911	0.00553849	0.134419	0.0648867
chr1	22059886	22059986	42273	0	+	0.44	(0.408,0.44]	chr1	5075	2	SS5_PROX	SS5_PROX:INTRON	ENSG00000289694:CDC42:CDC42-IT1	ENSG00000289694.1:ENSG00000070831.18:ENSG00000230068.2	ENST00000695855.1:ENST00000695856.1:ENST00000344548.8:ENST00000400259.5:ENST00000667384.2:ENST00000411827.2:ENST00000695858.1:ENST00000695857.1:ENST00000315554.14:ENST00000695859.1:ENST00000498236.1:ENST00000656825.1:ENST00000651171.1:ENST00000652582.1:ENST00000695860.1:ENST00000695796.1:ENST00000695797.1:ENST00000662562.2:ENST00000695798.1:ENST00000431803.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:nonsense_mediated_decay:lncRNA	6	69	2	1.4609	3.4942400000000005	5.52758	0.0340889	4.54953e-4	0.146815	0.0196892
chr16	15950498	15950598	6307767	0	+	0.58	(0.57,1]	chr16	603510	3	INTRON	INTRON	ABCC1	ENSG00000103222.20	ENST00000574224.2:ENST00000678422.1:ENST00000677164.1:ENST00000399408.7:ENST00000572882.3:ENST00000399410.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	38	2	1.94024	3.49417	5.0481	0.0116325	1.32594e-4	0.0889284	0.00992554
chr5	138803139	138803239	2497807	0	+	0.5	(0.476,0.515]	chr5	238725	117	INTRON	INTRON	CTNNA1	ENSG00000044115.21	ENST00000517980.5:ENST00000522227.5:ENST00000523912.5:ENST00000627109.2:ENST00000521724.5:ENST00000302763.12:ENST00000518910.5:ENST00000519309.5:ENST00000519113.5:ENST00000520158.5:ENST00000518825.5:ENST00000518585.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	44	2	1.92984	3.494155	5.05847	0.0466474	0.00108081	0.151522	0.0300133
chr4	25250544	25250639	1933064	0	+	0.368421	(0.35,0.378]	chr4	194047	1	EXON_SMALL	EXON_SMALL:INTRON	PI4K2B:U2	ENSG00000038210.14:ENSG00000278135.1	ENST00000512921.4:ENST00000264864.8:ENST00000611454.1	snRNA	snRNA	snRNA:protein_coding	snRNA:protein_coding	4	138	2	2.91317	3.4941050000000002	4.07504	0.00189062	2.01776e-6	0.0392053	8.71452e-4
chr11	32925072	32925172	4765034	0	+	0.43	(0.408,0.44]	chr11	440609	314	INTRON	INTRON	QSER1	ENSG00000060749.16	ENST00000650167.2:ENST00000399302.7:ENST00000527250.5	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	2.6542	3.4940999999999995	4.334	0.0227514	0.011982	0.117618	0.0962115
chr16	70006055	70006155	6509101	0	-	0.42	(0.408,0.44]	chr16	630286	92	INTRON	INTRON	PDXDC2P-NPIPB14P	ENSG00000196696.13	ENST00000531894.5:ENST00000530079.5:ENST00000525331.6:ENST00000526478.5:ENST00000529089.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	1	34	2	2.6542	3.4940999999999995	4.334	0.0227514	0.011982	0.117618	0.0962115
chr2	158608799	158608899	898674	0	+	0.41	(0.408,0.44]	chr2	99388	53	INTRON	INTRON	PKP4	ENSG00000144283.23	ENST00000389759.8:ENST00000426248.7:ENST00000389757.7:ENST00000457109.5:ENST00000452162.5:ENST00000421462.5:ENST00000462335.1:ENST00000481115.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	34	2	2.6542	3.4940999999999995	4.334	0.0227514	0.011982	0.117618	0.0962115
chr22	26522690	26522789	7564380	0	-	0.434343	(0.408,0.44]	chr22	773991	8	UTR3	UTR3:EXON_MRNA	TPST2	ENSG00000128294.16	ENST00000338754.9	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	2.6542	3.4940999999999995	4.334	0.0227514	0.011982	0.117618	0.0962115
chr10	60084316	60084411	4624488	0	-	0.557895	(0.515,0.57]	chr10	425775	5	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	ANK3	ENSG00000151150.22	ENST00000280772.7:ENST00000373827.6:ENST00000355288.6:ENST00000503366.5:ENST00000616444.4:ENST00000610321.4:ENST00000508449.1:ENST00000622427.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	39	2	2.57298	3.4939799999999996	4.41498	0.0106866	0.00506495	0.0861859	0.0646039
chr22	46283107	46283198	7533354	0	+	0.527473	(0.515,0.57]	chr22	770242	6	INTRON	INTRON	TTC38	ENSG00000075234.17	ENST00000381031.8:ENST00000422713.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	39	2	2.57298	3.4939799999999996	4.41498	0.0106866	0.00506495	0.0861859	0.0646039
chr1	110012462	110012562	181731	0	+	0.36	(0.35,0.378]	chr1	20046	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	AHCYL1	ENSG00000168710.18	ENST00000369799.10:ENST00000393614.8:ENST00000475081.1:ENST00000359172.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	44	2	2.34278	3.4936749999999996	4.64457	0.0129593	0.012652	0.0991015	0.0926667
chr6	17784472	17784562	3066483	0	-	0.355556	(0.35,0.378]	chr6	284941	4	INTRON	INTRON	KIF13A	ENSG00000137177.20	ENST00000378814.9:ENST00000502297.5:ENST00000259711.11:ENST00000378826.6:ENST00000378843.6:ENST00000636847.1:ENST00000358380.10:ENST00000506044.1	protein_coding	protein_coding	protein_coding	protein_coding	2	44	2	2.34278	3.4936749999999996	4.64457	0.0129593	0.012652	0.0991015	0.0926667
chr7	157170650	157170750	3454260	0	+	0.36	(0.35,0.378]	chr7	322917	2	SS5_PROX	SS5_PROX:INTRON	UBE3C	ENSG00000009335.18	ENST00000611269.4:ENST00000348165.10:ENST00000389103.4	protein_coding	protein_coding	protein_coding	protein_coding	2	44	2	2.34278	3.4936749999999996	4.64457	0.0129593	0.012652	0.0991015	0.0926667
chr2	208600053	208600153	995397	0	+	0.59	(0.57,1]	chr2	106914	275	INTRON	INTRON	PTH2R	ENSG00000144407.10	ENST00000419079.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	2	28	2	2.02391	3.493635	4.96336	0.0339274	2.05554e-4	0.134508	0.0124557
chr1	187322928	187323028	280552	0	+	0.27	[0,0.28]	chr1	32562	110	INTRON	INTRON	LINC01036	ENSG00000230426.5	ENST00000643891.1:ENST00000609113.2:ENST00000657376.1:ENST00000670356.1:ENST00000645691.1:ENST00000458683.1:ENST00000642737.1:ENST00000644648.1:ENST00000644419.1:ENST00000667298.1	lncRNA	lncRNA	lncRNA	lncRNA	1	39	2	2.69187	3.493615	4.29536	0.0590175	0.0221271	0.167915	0.123903
chr11	14475384	14475484	4918073	0	-	0.24	[0,0.28]	chr11	460902	2	SS5_PROX	SS5_PROX:INTRON	COPB1	ENSG00000129083.13	ENST00000249923.7:ENST00000439561.7:ENST00000526191.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	39	2	2.69187	3.493615	4.29536	0.0590175	0.0221271	0.167915	0.123903
chr12	101405981	101406081	5398077	0	-	0.26	[0,0.28]	chr12	514853	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	ARL1	ENSG00000120805.14	ENST00000261636.13:ENST00000539055.5:ENST00000536227.5:ENST00000551688.1:ENST00000551828.5:ENST00000551671.5:ENST00000551092.5:ENST00000549283.1:ENST00000549302.1:ENST00000548070.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	39	2	2.69187	3.493615	4.29536	0.0590175	0.0221271	0.167915	0.123903
chr15	55294583	55294683	6180956	0	-	0.23	[0,0.28]	chr15	589176	38	INTRON	INTRON	RAB27A	ENSG00000069974.16	ENST00000563262.5:ENST00000561545.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	39	2	2.69187	3.493615	4.29536	0.0590175	0.0221271	0.167915	0.123903
chr2	55664607	55664706	1125462	0	-	0.242424	[0,0.28]	chr2	120771	22	INTRON	INTRON	PNPT1	ENSG00000138035.15	ENST00000447944.7:ENST00000415374.5:ENST00000260604.8:ENST00000415489.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	39	2	2.69187	3.493615	4.29536	0.0590175	0.0221271	0.167915	0.123903
chr3	33677788	33677887	1653599	0	-	0.262626	[0,0.28]	chr3	169658	139	INTRON	INTRON	CLASP2	ENSG00000163539.18	ENST00000399362.8:ENST00000682230.1:ENST00000468888.6:ENST00000359576.9	protein_coding	protein_coding	protein_coding	protein_coding	1	39	2	2.69187	3.493615	4.29536	0.0590175	0.0221271	0.167915	0.123903
chr12	108695859	108695959	5406418	0	-	0.24	[0,0.28]	chr12	516012	1	SS5_PROX	SS5_PROX:INTRON	CORO1C	ENSG00000110880.11	ENST00000261401.8:ENST00000420959.6:ENST00000541050.5:ENST00000549384.5:ENST00000421578.6:ENST00000550542.5:ENST00000549772.5:ENST00000552871.5:ENST00000547294.5:ENST00000550032.5:ENST00000551550.5:ENST00000546571.5:ENST00000551044.1:ENST00000547170.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	38	2	2.36637	3.493605	4.62084	0.0500615	0.0313633	0.17488	0.13151
chr15	60368495	60368594	6195029	0	-	0.262626	[0,0.28]	chr15	590313	36	INTRON	INTRON	ANXA2	ENSG00000182718.18	ENST00000396024.7:ENST00000559818.6:ENST00000679109.1:ENST00000676687.1:ENST00000558169.6:ENST00000557906.6:ENST00000558558.6:ENST00000559113.6:ENST00000559780.6:ENST00000559956.6:ENST00000560468.6:ENST00000678870.1:ENST00000678061.1:ENST00000678450.1:ENST00000677968.1:ENST00000451270.7:ENST00000558985.6:ENST00000678796.1:ENST00000559647.2:ENST00000332680.8:ENST00000560014.5:ENST00000504475.6:ENST00000421017.6:ENST00000559176.5:ENST00000560466.5:ENST00000558132.5:ENST00000561022.5:ENST00000560367.6:ENST00000558503.6:ENST00000558998.5:ENST00000559559.5:ENST00000560165.5:ENST00000560389.5:ENST00000559725.5:ENST00000559350.5:ENST00000558986.5:ENST00000677258.1:ENST00000559467.5:ENST00000561445.5:ENST00000557937.5:ENST00000557904.5:ENST00000559370.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	38	2	2.36637	3.493605	4.62084	0.0500615	0.0313633	0.17488	0.13151
chr17	37110034	37110133	6760003	0	-	0.272727	[0,0.28]	chr17	664637	117	INTRON	INTRON	ACACA	ENSG00000278540.5	ENST00000616317.5:ENST00000614428.4:ENST00000612895.4:ENST00000619546.4:ENST00000617649.4:ENST00000614482.4:ENST00000613776.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	38	2	2.36637	3.493605	4.62084	0.0500615	0.0313633	0.17488	0.13151
chr18	9485329	9485429	6871232	0	+	0.27	[0,0.28]	chr18	680716	55	INTRON	INTRON	RALBP1	ENSG00000017797.13	ENST00000019317.8:ENST00000585015.6:ENST00000383432.8:ENST00000609094.2:ENST00000458039.3:ENST00000577221.1	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	2.36637	3.493605	4.62084	0.0500615	0.0313633	0.17488	0.13151
chr2	23863855	23863955	1080309	0	-	0.25	[0,0.28]	chr2	115308	3	SS3_PROX	SS3_PROX:INTRON	ATAD2B	ENSG00000119778.15	ENST00000238789.10:ENST00000366438.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	38	2	2.36637	3.493605	4.62084	0.0500615	0.0313633	0.17488	0.13151
chr2	148038413	148038513	886921	0	+	0.27	[0,0.28]	chr2	98613	99	INTRON	INTRON	MBD5	ENSG00000204406.14	ENST00000407073.5:ENST00000488372.5:ENST00000496158.5:ENST00000642680.2:ENST00000638130.1:ENST00000637308.1:ENST00000473478.5:ENST00000635796.1:ENST00000637997.1:ENST00000470063.5:ENST00000638043.2:ENST00000469438.1:ENST00000638090.1:ENST00000637445.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	38	2	2.36637	3.493605	4.62084	0.0500615	0.0313633	0.17488	0.13151
chr20	63612102	63612202	7363166	0	-	0.28	[0,0.28]	chr20	751333	69	INTRON	INTRON	GMEB2	ENSG00000101216.11	ENST00000266068.5:ENST00000370077.2	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	2.36637	3.493605	4.62084	0.0500615	0.0313633	0.17488	0.13151
chr3	37288834	37288934	1396215	0	+	0.24	[0,0.28]	chr3	146352	2	SS3_PROX	SS3_PROX:INTRON	GOLGA4	ENSG00000144674.17	ENST00000435830.6:ENST00000444882.5:ENST00000356847.8:ENST00000450863.6:ENST00000361924.7:ENST00000429018.5:ENST00000419177.3:ENST00000437131.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	38	2	2.36637	3.493605	4.62084	0.0500615	0.0313633	0.17488	0.13151
chr5	54358683	54358783	2354209	0	+	0.25	[0,0.28]	chr5	227061	180	INTRON	INTRON	LINC01033	ENSG00000249069.8	ENST00000665899.1:ENST00000653566.1:ENST00000655801.1:ENST00000654906.1:ENST00000667636.1:ENST00000665869.1:ENST00000664079.1:ENST00000659703.1:ENST00000662351.1:ENST00000523194.7:ENST00000665795.1:ENST00000667992.1:ENST00000662022.1:ENST00000657771.1:ENST00000517934.1	lncRNA	lncRNA	lncRNA	lncRNA	1	38	2	2.36637	3.493605	4.62084	0.0500615	0.0313633	0.17488	0.13151
chrX	45061419	45061519	7650502	0	+	0.21	[0,0.28]	chrX	782801	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000675440.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000621147.5:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1:ENST00000675525.1:ENST00000414389.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	38	2	2.36637	3.493605	4.62084	0.0500615	0.0313633	0.17488	0.13151
chrX	124001567	124001667	7717151	0	+	0.26	[0,0.28]	chrX	789462	378	INTRON	INTRON	STAG2	ENSG00000101972.20	ENST00000394477.5:ENST00000218089.13:ENST00000455404.5:ENST00000483575.5:ENST00000687810.1:ENST00000687071.1:ENST00000469481.1:ENST00000458700.5:ENST00000371160.5:ENST00000435103.5:ENST00000687852.1:ENST00000371145.8:ENST00000692982.1:ENST00000371157.7:ENST00000691035.1:ENST00000686802.1:ENST00000691383.1:ENST00000686127.1:ENST00000371144.7:ENST00000458176.5:ENST00000466748.5:ENST00000471107.1:ENST00000428941.5:ENST00000435215.5:ENST00000394478.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	38	2	2.36637	3.493605	4.62084	0.0500615	0.0313633	0.17488	0.13151
chr9	131178910	131179009	4216178	0	+	0.383838	(0.378,0.408]	chr9	386630	1	INTRON	INTRON	NUP214	ENSG00000126883.19	ENST00000695497.1:ENST00000695498.1:ENST00000695496.1:ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000525980.5:ENST00000526346.5:ENST00000531929.5:ENST00000651334.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	253	2	3.09143	3.4934250000000002	3.89542	7.29146e-6	2.00866e-6	0.00191858	9.69254e-4
chr22	21764340	21764440	7560342	0	-	0.39	(0.378,0.408]	chr22	773346	1	SS3_PROX	SS3_PROX:INTRON	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000491588.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	152	2	3.46251	3.4933199999999998	3.52413	1.37139e-4	8.58502e-6	0.0106749	0.00210871
chr11	77738040	77738140	4995146	0	-	0.58	(0.57,1]	chr11	472029	120	INTRON	INTRON	RSF1	ENSG00000048649.14	ENST00000308488.11:ENST00000528095.5:ENST00000534794.1:ENST00000440064.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	28	2	2.42282	3.4932350000000003	4.56365	0.00879576	0.00129848	0.0790073	0.0333764
chr19	18590460	18590558	7033297	0	+	0.612245	(0.57,1]	chr19	700955	7	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	REX1BD	ENSG00000006015.18	ENST00000598375.5:ENST00000450195.6:ENST00000358607.11:ENST00000600997.5:ENST00000601736.1:ENST00000597371.1:ENST00000595490.1:ENST00000595077.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	28	2	2.42282	3.4932350000000003	4.56365	0.00879576	0.00129848	0.0790073	0.0333764
chr17	47586754	47586849	6622158	0	+	0.347368	(0.32,0.35]	chr17	645897	1	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NPEPPS	ENSG00000141279.17	ENST00000525037.5:ENST00000677710.1:ENST00000530173.6:ENST00000677226.1:ENST00000322157.9:ENST00000678461.1:ENST00000532729.6:ENST00000677120.1:ENST00000678909.1:ENST00000678496.1:ENST00000678262.1:ENST00000677370.1:ENST00000677664.1:ENST00000528751.6:ENST00000527298.5:ENST00000602788.5:ENST00000676492.1:ENST00000534814.5:ENST00000527964.5:ENST00000530514.6:ENST00000527360.1:ENST00000533538.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	88	2	1.32056	3.4931099999999997	5.66566	0.0398275	6.06695e-4	0.161534	0.0226059
chr2	26374539	26374639	715301	0	+	0.36	(0.35,0.378]	chr2	82596	1	SS3_PROX	SS3_PROX:INTRON	SELENOI	ENSG00000138018.19	ENST00000260585.12:ENST00000447170.1	protein_coding	protein_coding	protein_coding	protein_coding	7	202	2	3.09772	3.4928999999999997	3.88808	1.69768e-5	1.62079e-5	0.00324284	0.00312938
chr7	140124020	140124120	3659672	0	-	0.39	(0.378,0.408]	chr7	339715	31	INTRON	INTRON	KDM7A	ENSG00000006459.11	ENST00000397560.7	protein_coding	protein_coding	protein_coding	protein_coding	2	42	2	2.17608	3.49288	4.80968	0.0218783	0.00679828	0.123836	0.0711802
chr7	152341396	152341495	3680345	0	-	0.393939	(0.378,0.408]	chr7	341647	103	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000682301.1:ENST00000452749.2:ENST00000680867.1:ENST00000683800.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	42	2	2.17608	3.49288	4.80968	0.0218783	0.00679828	0.123836	0.0711802
chr1	246926843	246926943	681912	0	-	0.51	(0.476,0.515]	chr1	80043	81	INTRON	INTRON	AHCTF1	ENSG00000153207.16	ENST00000648844.2:ENST00000326225.3:ENST00000366508.5	protein_coding	protein_coding	protein_coding	protein_coding	8	222	2	3.13643	3.492865	3.8493	1.08471e-5	1.91847e-6	0.00242118	9.42656e-4
chr12	104304869	104304969	5210189	0	+	0.34	(0.32,0.35]	chr12	493210	134	INTRON	INTRON	TXNRD1	ENSG00000198431.17	ENST00000525566.6:ENST00000526266.5:ENST00000503506.6:ENST00000526691.5:ENST00000531691.5:ENST00000526390.5:ENST00000531689.5:ENST00000529546.5:ENST00000529751.1:ENST00000528079.6:ENST00000526580.5:ENST00000529784.5:ENST00000524698.5:ENST00000527688.5:ENST00000527335.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	34	2	2.71269	3.492845	4.273	0.0368357	0.0181461	0.138959	0.114853
chr20	38048881	38048981	7269029	0	+	0.34	(0.32,0.35]	chr20	738685	4	SS5_PROX	SS5_PROX:INTRON	RPRD1B	ENSG00000101413.12	ENST00000462548.6:ENST00000373433.9:ENST00000495457.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	34	2	2.71269	3.492845	4.273	0.0368357	0.0181461	0.138959	0.114853
chr6	20618619	20618718	2829227	0	+	0.323232	(0.32,0.35]	chr6	265649	591	INTRON	INTRON	CDKAL1	ENSG00000145996.11	ENST00000274695.8:ENST00000378610.1	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	2.71269	3.492845	4.273	0.0368357	0.0181461	0.138959	0.114853
chr7	127786587	127786687	3403756	0	+	0.34	(0.32,0.35]	chr7	318134	648	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000468166.5:ENST00000465900.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	34	2	2.71269	3.492845	4.273	0.0368357	0.0181461	0.138959	0.114853
chr1	100113461	100113560	515663	0	-	0.575758	(0.57,1]	chr1	60466	26	INTRON	INTRON	SASS6	ENSG00000156876.10	ENST00000462159.1:ENST00000287482.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	27	2	2.38391	3.49276	4.60161	0.0104374	0.00142229	0.0902296	0.0340865
chr11	94480943	94481040	5018442	0	-	0.350515	(0.35,0.378]	chr11	473426	8	INTRON	INTRON	MRE11	ENSG00000020922.13	ENST00000323929.8:ENST00000407439.7:ENST00000323977.7:ENST00000393241.8:ENST00000540013.5:ENST00000541157.5:ENST00000536754.5:ENST00000538923.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	35	2	2.1617	3.4927349999999997	4.82377	0.0771502	0.00325499	0.196285	0.0524329
chr20	50581660	50581760	7286635	0	+	0.37	(0.35,0.378]	chr20	741285	2	SS5_PROX	SS5_PROX:INTRON	PTPN1	ENSG00000196396.10	ENST00000541713.5:ENST00000371621.5	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	2.1617	3.4927349999999997	4.82377	0.0771502	0.00325499	0.196285	0.0524329
chr12	62474375	62474475	5151236	0	+	0.47	(0.44,0.476]	chr12	487458	32	INTRON	INTRON	MON2	ENSG00000061987.16	ENST00000641654.1:ENST00000546600.5:ENST00000393630.8:ENST00000549378.5:ENST00000547095.5:ENST00000552738.5:ENST00000393629.6:ENST00000552115.5:ENST00000549286.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	139	2	2.82689	3.4927099999999998	4.15853	7.83694e-5	5.45601e-5	0.00738014	0.00651589
chr4	898658	898757	2093949	0	-	0.50505	(0.476,0.515]	chr4	206956	1	INTRON	INTRON	GAK	ENSG00000178950.18	ENST00000314167.9:ENST00000511163.5:ENST00000505819.5:ENST00000507580.5:ENST00000502656.5:ENST00000507991.1:ENST00000512325.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	44	2	1.99197	3.4926950000000003	4.99342	0.039572	0.00139274	0.143072	0.0341261
chr12	116106826	116106926	5423836	0	-	0.33	(0.32,0.35]	chr12	518251	97	INTRON	INTRON	MED13L	ENSG00000123066.9	ENST00000281928.9:ENST00000650226.1:ENST00000548743.2:ENST00000647567.1	protein_coding	protein_coding	protein_coding	protein_coding	2	82	2	2.89743	3.49249	4.08755	0.0127608	6.37693e-5	0.0926667	0.00660941
chr12	62366922	62367021	5150633	0	+	0.373737	(0.35,0.378]	chr12	487365	111	INTRON	INTRON	USP15	ENSG00000135655.16	ENST00000353364.7:ENST00000280377.10:ENST00000547317.5:ENST00000549268.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	35	2	2.39939	3.49238	4.58537	0.0458078	0.00703328	0.149888	0.0754576
chr22	26468251	26468351	7563966	0	-	0.36	(0.35,0.378]	chr22	773855	21	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	HPS4	ENSG00000100099.21	ENST00000398145.7:ENST00000466781.5:ENST00000439453.5:ENST00000336873.9:ENST00000402105.7:ENST00000464362.5:ENST00000429411.5:ENST00000496385.5:ENST00000485842.5:ENST00000422379.2:ENST00000459918.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	35	2	2.39939	3.49238	4.58537	0.0458078	0.00703328	0.149888	0.0754576
chr4	10440855	10440953	2107443	0	-	0.357143	(0.35,0.378]	chr4	208507	11	UTR3	UTR3:EXON_MRNA	ZNF518B	ENSG00000178163.8	ENST00000326756.4	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	2.39939	3.49238	4.58537	0.0458078	0.00703328	0.149888	0.0754576
chr10	59882756	59882856	4623642	0	-	0.52	(0.515,0.57]	chr10	425682	297	INTRON	INTRON	CCDC6	ENSG00000108091.11	ENST00000263102.7	protein_coding	protein_coding	protein_coding	protein_coding	2	59	2	3.35609	3.49215	3.62821	0.00174131	4.12866e-4	0.0375363	0.0181365
chr1	51521882	51521982	98588	0	+	0.5	(0.476,0.515]	chr1	13212	30	INTRON	INTRON	EPS15-AS1	ENSG00000227070.1	ENST00000415031.1:ENST00000426017.1	lncRNA	lncRNA	lncRNA	lncRNA	1	34	2	2.7646	3.49212	4.21964	0.0167715	0.0162075	0.110511	0.101453
chr16	70675028	70675124	6512077	0	-	0.489583	(0.476,0.515]	chr16	630836	1	INTRON	INTRON	MTSS2	ENSG00000132613.16	ENST00000338779.11:ENST00000562883.6	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	2.7646	3.49212	4.21964	0.0167715	0.0162075	0.110511	0.101453
chr17	62489194	62489294	6652982	0	+	0.44	(0.408,0.44]	chr17	649307	27	INTRON	INTRON	TLK2	ENSG00000146872.19	ENST00000582809.5:ENST00000684213.1:ENST00000583843.5:ENST00000579450.5:ENST00000577616.1:ENST00000582195.6:ENST00000682085.1:ENST00000580705.5:ENST00000346027.10:ENST00000326270.13:ENST00000682203.1:ENST00000343388.11:ENST00000683536.1:ENST00000684440.1:ENST00000684772.1:ENST00000682274.1:ENST00000682827.1:ENST00000583690.6:ENST00000682075.1:ENST00000683104.1:ENST00000684012.1:ENST00000581041.5:ENST00000684553.1:ENST00000683737.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	60	2	2.15894	3.49212	4.8253	0.0056738	0.00504142	0.0653997	0.0646039
chr2	75957064	75957164	817730	0	+	0.51	(0.476,0.515]	chr2	91391	842	INTRON	INTRON	ENSG00000287474	ENSG00000287474.1	ENST00000670606.1	lncRNA	lncRNA	lncRNA	lncRNA	1	34	2	2.7646	3.49212	4.21964	0.0167715	0.0162075	0.110511	0.101453
chr7	733637	733737	3267916	0	+	0.48	(0.476,0.515]	chr7	303447	34	INTRON	INTRON	DNAAF5	ENSG00000164818.16	ENST00000297440.11:ENST00000437419.5:ENST00000438961.1:ENST00000440747.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	34	2	2.7646	3.49212	4.21964	0.0167715	0.0162075	0.110511	0.101453
chr8	8859289	8859389	3907266	0	-	0.49	(0.476,0.515]	chr8	358041	373	INTRON	INTRON	MFHAS1	ENSG00000147324.11	ENST00000276282.7:ENST00000521881.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	34	2	2.7646	3.49212	4.21964	0.0167715	0.0162075	0.110511	0.101453
chr9	136072534	136072634	4373240	0	-	0.49	(0.476,0.515]	chr9	402592	216	INTRON	INTRON	NACC2	ENSG00000148411.8	ENST00000277554.4	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	2.7646	3.49212	4.21964	0.0167715	0.0162075	0.110511	0.101453
chr17	15536080	15536180	6732191	0	-	0.55	(0.515,0.57]	chr17	660304	51	INTRON	INTRON	TVP23C-CDRT4:TVP23C	ENSG00000259024.6:ENSG00000175106.17	ENST00000522212.6:ENST00000557349.5:ENST00000481756.7:ENST00000518506.4:ENST00000225576.7:ENST00000581273.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	59	2	3.40388	3.492115	3.58035	0.00142538	5.21239e-4	0.0340865	0.0204523
chr1	50593439	50593538	448578	0	-	0.343434	(0.32,0.35]	chr1	54213	83	INTRON	INTRON	FAF1	ENSG00000185104.21	ENST00000396153.7:ENST00000494400.5:ENST00000472808.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	34	2	2.21917	3.49209	4.76501	0.0641245	0.0114287	0.199279	0.0886611
chr14	101910285	101910380	5820014	0	+	0.326316	(0.32,0.35]	chr14	551936	2	INTRON	INTRON	PPP2R5C	ENSG00000078304.20	ENST00000694906.1:ENST00000422945.6:ENST00000328724.9:ENST00000350249.7:ENST00000334743.9:ENST00000445439.7:ENST00000556218.5:ENST00000557716.2:ENST00000561006.5:ENST00000555237.5:ENST00000557071.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	34	2	2.21917	3.49209	4.76501	0.0641245	0.0114287	0.199279	0.0886611
chr16	70561984	70562084	6385546	0	+	0.33	(0.32,0.35]	chr16	613968	2	SS5_PROX	SS5_PROX:INTRON	SF3B3	ENSG00000189091.13	ENST00000302516.10:ENST00000568539.1:ENST00000563739.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	34	2	2.21917	3.49209	4.76501	0.0641245	0.0114287	0.199279	0.0886611
chr7	107521936	107522036	3612605	0	-	0.42	(0.408,0.44]	chr7	336698	411	INTRON	INTRON	COG5	ENSG00000164597.15	ENST00000297135.9:ENST00000347053.8:ENST00000393603.7:ENST00000475638.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	187	2	3.22229	3.492	3.76171	2.44358e-5	5.8313e-6	0.00406051	0.00169239
chr5	54021009	54021109	2618014	0	-	0.49	(0.476,0.515]	chr5	248835	1090	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	91	2	3.00507	3.4919599999999997	3.97885	8.38796e-4	1.30749e-4	0.0263691	0.0103941
chr16	21503113	21503210	6461387	0	-	0.453608	(0.44,0.476]	chr16	623379	4	INTRON	INTRON	SMG1P3	ENSG00000180747.15	ENST00000522841.6:ENST00000437413.2:ENST00000435197.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	4	109	2	2.82531	3.49192	4.15853	5.00634e-4	5.45601e-5	0.020217099999999998	0.00651589
chr5	151796395	151796470	2522060	0	+	0.533333	(0.515,0.57]	chr5	241340	1	UTR3	UTR3:EXON_MRNA:INTRON	G3BP1	ENSG00000145907.16	ENST00000678070.1:ENST00000678964.1:ENST00000678925.1:ENST00000394123.7:ENST00000676978.1:ENST00000679289.1:ENST00000677493.1:ENST00000676644.1:ENST00000677757.1:ENST00000522761.6:ENST00000676827.1:ENST00000520177.6:ENST00000676634.1:ENST00000678854.1:ENST00000676911.1:ENST00000356245.8:ENST00000678646.1:ENST00000677381.1:ENST00000678904.1:ENST00000678910.1:ENST00000678101.1:ENST00000677105.1:ENST00000676813.1:ENST00000522367.6:ENST00000678369.1:ENST00000677433.1:ENST00000678564.1:ENST00000677923.1:ENST00000677323.1:ENST00000522666.1:ENST00000678750.1:ENST00000677687.1:ENST00000678372.1:ENST00000677211.1:ENST00000678194.1:ENST00000679004.1:ENST00000678726.1:ENST00000678500.1:ENST00000679135.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	48	2	1.91916	3.491875	5.06459	0.0231902	6.03964e-4	0.118148	0.0223465
chr1	84499106	84499204	495948	0	-	0.193878	[0,0.28]	chr1	58754	9	UTR3	UTR3:EXON_MRNA:INTRON	GNG5	ENSG00000174021.12	ENST00000689285.1:ENST00000370645.9:ENST00000487806.5:ENST00000370641.3:ENST00000686161.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	38	2	2.43761	3.491855	4.5461	0.0423864	0.0365918	0.161744	0.138959
chr1	114498160	114498259	527769	0	-	0.252525	[0,0.28]	chr1	62153	334	INTRON	INTRON	TRIM33	ENSG00000197323.12	ENST00000358465.7:ENST00000369543.6	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	2.43761	3.491855	4.5461	0.0423864	0.0365918	0.161744	0.138959
chr11	3747239	3747339	4894659	0	-	0.26	[0,0.28]	chr11	458870	22	INTRON	INTRON	NUP98	ENSG00000110713.17	ENST00000359171.8:ENST00000324932.12:ENST00000650171.1:ENST00000355260.7:ENST00000397004.8:ENST00000397007.8:ENST00000527104.5:ENST00000529379.1:ENST00000397013.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	38	2	2.43761	3.491855	4.5461	0.0423864	0.0365918	0.161744	0.138959
chr14	103440969	103441069	5826190	0	+	0.27	[0,0.28]	chr14	552833	1	SS3_PROX	SS3_PROX:INTRON	MARK3	ENSG00000075413.19	ENST00000678179.1:ENST00000676838.1:ENST00000677348.1:ENST00000677404.1:ENST00000676694.1:ENST00000676938.1:ENST00000678619.1:ENST00000676897.1:ENST00000677214.1:ENST00000677942.1:ENST00000676830.1:ENST00000678999.1:ENST00000677228.1:ENST00000556744.2:ENST00000677104.1:ENST00000679330.1:ENST00000560417.6:ENST00000440884.7:ENST00000676475.1:ENST00000677035.1:ENST00000678022.1:ENST00000677560.1:ENST00000561314.6:ENST00000429436.7:ENST00000677118.1:ENST00000676564.1:ENST00000678169.1:ENST00000678175.1:ENST00000678897.1:ENST00000678278.1:ENST00000676645.1:ENST00000677829.1:ENST00000678302.1:ENST00000677133.1:ENST00000561164.2:ENST00000558223.6:ENST00000559328.6:ENST00000678207.1:ENST00000677360.1:ENST00000676905.1:ENST00000678343.1:ENST00000677347.1:ENST00000678071.1:ENST00000677432.1:ENST00000678237.1:ENST00000677604.1:ENST00000676518.1:ENST00000677051.1:ENST00000677857.1:ENST00000677869.1:ENST00000678423.1:ENST00000560603.6:ENST00000416682.6:ENST00000303622.13:ENST00000216288.11:ENST00000679105.1:ENST00000553942.5:ENST00000335102.9:ENST00000561225.1:ENST00000678091.1:ENST00000561071.5:ENST00000558698.5:ENST00000559268.5:ENST00000560731.5:ENST00000676745.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	38	2	2.43761	3.491855	4.5461	0.0423864	0.0365918	0.161744	0.138959
chr16	30280251	30280342	6472800	0	-	0.274725	[0,0.28]	chr16	625631	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SMG1P5	ENSG00000183604.15	ENST00000529428.5	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	1	38	2	2.43761	3.491855	4.5461	0.0423864	0.0365918	0.161744	0.138959
chr2	175162739	175162839	1272287	0	-	0.25	[0,0.28]	chr2	134482	112	INTRON	INTRON	ATF2	ENSG00000115966.18	ENST00000345739.9:ENST00000426833.7:ENST00000264110.7:ENST00000409635.5:ENST00000428760.5:ENST00000392544.5:ENST00000417080.5:ENST00000456655.5:ENST00000421438.5:ENST00000429579.5:ENST00000415955.5:ENST00000409499.5:ENST00000435231.6:ENST00000437522.5:ENST00000409833.5:ENST00000413123.5:ENST00000445349.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	38	2	2.43761	3.491855	4.5461	0.0423864	0.0365918	0.161744	0.138959
chr3	156540637	156540735	1844362	0	-	0.234694	[0,0.28]	chr3	185571	12	UTR3	UTR3:EXON_MRNA	SSR3	ENSG00000114850.7	ENST00000265044.7	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	2.43761	3.491855	4.5461	0.0423864	0.0365918	0.161744	0.138959
chr6	47514126	47514226	2873929	0	+	0.25	[0,0.28]	chr6	272731	103	INTRON	INTRON	CD2AP	ENSG00000198087.7	ENST00000359314.5	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	2.43761	3.491855	4.5461	0.0423864	0.0365918	0.161744	0.138959
chr7	10527511	10527611	3482054	0	-	0.59	(0.57,1]	chr7	325766	744	INTRON	INTRON	MGC4859	ENSG00000283117.1	ENST00000634803.1	lncRNA	lncRNA	lncRNA	lncRNA	4	59	2	2.96471	3.491855	4.019	1.58729e-4	3.13356e-5	0.0108333	0.00467101
chr8	51843118	51843218	3946028	0	-	0.27	[0,0.28]	chr8	362016	31	INTRON	INTRON	PCMTD1	ENSG00000168300.14	ENST00000544451.2:ENST00000360540.9:ENST00000522514.6:ENST00000519559.1:ENST00000519554.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	38	2	2.43761	3.491855	4.5461	0.0423864	0.0365918	0.161744	0.138959
chr7	119762244	119762344	3628961	0	-	0.22	[0,0.28]	chr7	337323	97	INTRON	INTRON	LINC02476	ENSG00000225546.6	ENST00000660268.1:ENST00000431071.5:ENST00000426413.2	lncRNA	lncRNA	lncRNA	lncRNA	3	130	2	3.33605	3.4918500000000003	3.64765	0.00144832	3.05093e-4	0.034341000000000003	0.0155972
chr19	10741329	10741429	7014002	0	+	0.52	(0.515,0.57]	chr19	696920	223	INTRON	INTRON	DNM2	ENSG00000079805.19	ENST00000683738.1:ENST00000682285.1:ENST00000682524.1:ENST00000355667.11:ENST00000389253.9:ENST00000585892.5:ENST00000359692.10:ENST00000408974.8:ENST00000586939.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	40	2	1.79136	3.49172	5.19208	0.0638444	3.4344e-4	0.177811	0.0164987
chr1	174255480	174255579	258075	0	+	0.393939	(0.378,0.408]	chr1	30773	25	INTRON	INTRON	RABGAP1L	ENSG00000152061.24	ENST00000357444.10:ENST00000251507.8:ENST00000681986.1:ENST00000457696.1	protein_coding	protein_coding	protein_coding	protein_coding	2	71	2	3.14892	3.491695	3.83447	0.00499984	1.86403e-4	0.0617433	0.0119078
chr10	68333923	68334022	4440777	0	+	0.30303	(0.28,0.32]	chr10	409480	13	INTRON	INTRON	HNRNPH3	ENSG00000096746.18	ENST00000469172.5:ENST00000461310.5:ENST00000265866.12:ENST00000480987.5:ENST00000486854.5:ENST00000467249.1:ENST00000354695.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	186	2	3.30846	3.491675	3.67489	8.69705e-5	5.56432e-5	0.00838464	0.0061014
chr2	55388277	55388363	1124075	0	-	0.255814	[0,0.28]	chr2	120561	1	SS5_PROX	SS5_PROX:INTRON	CCDC88A	ENSG00000115355.18	ENST00000263630.13:ENST00000436346.7:ENST00000336838.10:ENST00000642200.1:ENST00000413716.7:ENST00000643413.1:ENST00000647401.1:ENST00000645311.1:ENST00000646796.1:ENST00000645571.1:ENST00000645477.1:ENST00000645072.1:ENST00000644890.1:ENST00000644630.1:ENST00000647098.1:ENST00000646324.1:ENST00000642890.1:ENST00000647517.1:ENST00000645031.1:ENST00000645484.1:ENST00000645529.1:ENST00000644033.1:ENST00000644193.1:ENST00000645168.1:ENST00000647341.1:ENST00000430086.1:ENST00000644127.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	38	2	2.29142	3.4916650000000002	4.69191	0.0592143	0.0269474	0.189982	0.123442
chr2	95878177	95878274	1178545	0	-	0.185567	[0,0.28]	chr2	125773	13	INTRON	INTRON	ANKRD36C	ENSG00000174501.15	ENST00000295246.7:ENST00000456556.5:ENST00000531153.5:ENST00000534304.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	38	2	2.29142	3.4916650000000002	4.69191	0.0592143	0.0269474	0.189982	0.123442
chr15	50583359	50583459	6172217	0	-	0.39	(0.378,0.408]	chr15	588238	2	SS3_PROX	SS3_PROX:INTRON	TRPM7	ENSG00000092439.16	ENST00000646667.1:ENST00000560955.5:ENST00000560849.2:ENST00000645282.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	34	2	2.13703	3.49165	4.84627	0.0797592	0.00254319	0.19979	0.0465056
chr20	35283775	35283875	7334076	0	-	0.38	(0.378,0.408]	chr20	747111	2	SS5_PROX	SS5_PROX:INTRON	EIF6	ENSG00000242372.9	ENST00000675032.1:ENST00000447927.6:ENST00000374443.7:ENST00000374436.7:ENST00000440766.5:ENST00000374450.8:ENST00000415116.1:ENST00000462894.1:ENST00000456600.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	58	2	2.06535	3.491555	4.91776	0.0159849	0.00196368	0.101453	0.0411469
chr1	193194703	193194803	285349	0	+	0.29	(0.28,0.32]	chr1	32823	76	INTRON	INTRON	CDC73	ENSG00000134371.14	ENST00000649895.1:ENST00000643006.1:ENST00000367435.5:ENST00000650197.1:ENST00000648071.1:ENST00000635846.1:ENST00000649613.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	36	2	2.73945	3.491325	4.2432	0.0479043	0.017681	0.153019	0.11319
chr22	22308143	22308196	7482926	0	+	0.283019	(0.28,0.32]	chr22	763448	2	INTRON	INTRON	ENSG00000286129:BMS1P20	ENSG00000286129.1:ENSG00000272779.1	ENST00000652112.1:ENST00000413293.1	lncRNA	lncRNA	lncRNA:transcribed_unprocessed_pseudogene	lncRNA:transcribed_unprocessed_pseudogene	1	36	2	2.73945	3.491325	4.2432	0.0479043	0.017681	0.153019	0.11319
chr7	131387562	131387662	3417042	0	+	0.3	(0.28,0.32]	chr7	319199	3	SS5_PROX	SS5_PROX:INTRON	MKLN1	ENSG00000128585.18	ENST00000421797.6:ENST00000416992.6:ENST00000429546.5:ENST00000446815.5:ENST00000494286.5:ENST00000352689.11:ENST00000494785.5:ENST00000458153.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	36	2	2.73945	3.491325	4.2432	0.0479043	0.017681	0.153019	0.11319
chrX	47566338	47566438	7656238	0	+	0.32	(0.28,0.32]	chrX	783503	3	SS3_PROX	SS3_PROX:INTRON	ARAF	ENSG00000078061.14	ENST00000377045.9	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	2.73945	3.491325	4.2432	0.0479043	0.017681	0.153019	0.11319
chr22	20548847	20548947	7479766	0	+	0.59	(0.57,1]	chr22	762972	113	INTRON	INTRON	MED15	ENSG00000099917.17	ENST00000445987.5:ENST00000444094.5:ENST00000414658.5:ENST00000486656.5:ENST00000433831.5:ENST00000432052.5:ENST00000292733.11:ENST00000263205.11:ENST00000477824.5:ENST00000406969.5:ENST00000382974.6:ENST00000441501.5:ENST00000445189.5:ENST00000451058.5:ENST00000473028.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	38	2	3.42323	3.4912150000000004	3.5592	8.58388e-4	4.21089e-4	0.0267428	0.0183576
chr6	128503040	128503140	3217278	0	-	0.49	(0.476,0.515]	chr6	299033	108	INTRON	INTRON	PTPRK	ENSG00000152894.15	ENST00000368226.9:ENST00000368213.9:ENST00000532331.5:ENST00000368210.7:ENST00000368215.7:ENST00000368207.7:ENST00000524481.5:ENST00000524534.5:ENST00000525459.1:ENST00000392449.4:ENST00000532751.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	55	2	2.05714	3.4912150000000004	4.92529	0.0156961	0.00180221	0.101453	0.0392772
chr1	185315959	185316057	603705	0	-	0.387755	(0.378,0.408]	chr1	71930	43	INTRON	INTRON	IVNS1ABP	ENSG00000116679.16	ENST00000367498.8:ENST00000459929.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	34	2	2.46373	3.491135	4.51854	0.0382831	0.00748824	0.141795	0.0772645
chr10	13645546	13645636	4396471	0	+	0.388889	(0.378,0.408]	chr10	405810	4	SS5_PROX	SS5_PROX:INTRON	ENSG00000239665	ENSG00000239665.8	ENST00000597920.5:ENST00000615691.4:ENST00000440878.5:ENST00000617260.4:ENST00000601758.5:ENST00000599639.5:ENST00000596499.5:ENST00000613467.4:ENST00000616949.4:ENST00000622389.4:ENST00000612284.4:ENST00000613937.4:ENST00000600249.5:ENST00000614991.4:ENST00000600501.5:ENST00000596235.5:ENST00000613332.4:ENST00000621308.4:ENST00000620849.4	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	1	34	2	2.46373	3.491135	4.51854	0.0382831	0.00748824	0.141795	0.0772645
chr15	41334542	41334641	6004787	0	+	0.383838	(0.378,0.408]	chr15	571290	11	INTRON	INTRON	NUSAP1	ENSG00000137804.14	ENST00000668273.1:ENST00000260359.10:ENST00000558123.5:ENST00000559046.5:ENST00000414849.6:ENST00000450592.6:ENST00000559596.6:ENST00000558582.5:ENST00000560747.5:ENST00000559659.1:ENST00000560177.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	34	2	2.46373	3.491135	4.51854	0.0382831	0.00748824	0.141795	0.0772645
chr16	21474042	21474140	6461088	0	-	0.387755	(0.378,0.408]	chr16	623337	4	INTRON	INTRON	SMG1P3	ENSG00000180747.15	ENST00000522480.5:ENST00000522841.6	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	1	34	2	2.46373	3.491135	4.51854	0.0382831	0.00748824	0.141795	0.0772645
chr2	169544520	169544620	1261398	0	-	0.4	(0.378,0.408]	chr2	133632	4	SS5_PROX	SS5_PROX:INTRON	FASTKD1	ENSG00000138399.18	ENST00000453153.7:ENST00000453929.6	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	2.46373	3.491135	4.51854	0.0382831	0.00748824	0.141795	0.0772645
chr5	87335409	87335507	2411470	0	+	0.397959	(0.378,0.408]	chr5	232400	17	INTRON	INTRON	RASA1	ENSG00000145715.15	ENST00000274376.11:ENST00000515800.6:ENST00000456692.6:ENST00000506290.1:ENST00000512763.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	34	2	2.46373	3.491135	4.51854	0.0382831	0.00748824	0.141795	0.0772645
chr5	105389360	105389460	2696320	0	-	0.39	(0.378,0.408]	chr5	254248	1431	INTRON	INTRON	ENSG00000251574	ENSG00000251574.8	ENST00000503650.1	lncRNA	lncRNA	lncRNA	lncRNA	1	34	2	2.46373	3.491135	4.51854	0.0382831	0.00748824	0.141795	0.0772645
chr6	63696247	63696345	2883907	0	+	0.387755	(0.378,0.408]	chr6	273601	11	INTRON	INTRON	PHF3	ENSG00000118482.12	ENST00000262043.8:ENST00000506783.5:ENST00000481385.6:ENST00000515594.5:ENST00000509876.5:ENST00000393387.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	34	2	2.46373	3.491135	4.51854	0.0382831	0.00748824	0.141795	0.0772645
chr6	13680504	13680604	3058912	0	-	0.39	(0.378,0.408]	chr6	284542	213	INTRON	INTRON	RANBP9	ENSG00000010017.13	ENST00000011619.6	protein_coding	protein_coding	protein_coding	protein_coding	10	297	2	3.22054	3.491105	3.76167	3.60996e-5	4.70648e-8	0.00508987	8.91482e-5
chr5	872948	873046	2564417	0	-	0.489796	(0.476,0.515]	chr5	245464	10	INTRON	INTRON	BRD9	ENSG00000028310.18	ENST00000493082.5:ENST00000467963.6:ENST00000495265.5:ENST00000490814.6:ENST00000495794.5:ENST00000483234.5:ENST00000489816.5:ENST00000483173.5:ENST00000519112.5:ENST00000523139.5:ENST00000518251.1:ENST00000475706.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	68	2	3.19975	3.490935	3.78212	0.00383299	2.36145e-4	0.0542786	0.0136195
chr8	141422050	141422145	3878684	0	+	0.484211	(0.476,0.515]	chr8	356216	8	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PTP4A3	ENSG00000184489.13	ENST00000520105.5:ENST00000521578.6:ENST00000523147.5:ENST00000329397.6:ENST00000349124.3:ENST00000680615.1:ENST00000681443.1:ENST00000524028.1	protein_coding	protein_coding	protein_coding	protein_coding	6	179	2	3.27936	3.4907399999999997	3.70212	3.89817e-5	4.94867e-6	0.00504677	0.0016389900000000001
chr7	67281917	67282016	3541655	0	-	0.515152	(0.476,0.515]	chr7	330372	72	INTRON	INTRON	PMS2P4	ENSG00000067601.9	ENST00000685171.1:ENST00000688358.1:ENST00000692496.1:ENST00000685583.1:ENST00000688710.1:ENST00000684859.1:ENST00000685318.1:ENST00000691713.1:ENST00000686389.1:ENST00000690253.1:ENST00000688815.1:ENST00000692171.1:ENST00000692360.1:ENST00000689281.1:ENST00000690241.1:ENST00000689629.1:ENST00000689043.1:ENST00000688809.1:ENST00000687432.1:ENST00000687680.1:ENST00000686900.1:ENST00000691782.1:ENST00000693356.1:ENST00000691384.1:ENST00000690440.1:ENST00000686719.1:ENST00000686561.1:ENST00000688238.1:ENST00000687826.1:ENST00000689908.1:ENST00000689385.1:ENST00000689855.1:ENST00000691806.1:ENST00000689028.1:ENST00000688599.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	2	68	2	3.44784	3.49073	3.53362	0.00113238	0.00102391	0.0308465	0.029231300000000002
chr16	18170423	18170522	6454339	0	-	0.383838	(0.378,0.408]	chr16	621964	190	INTRON	INTRON	ENSG00000260242	ENSG00000260242.1	ENST00000563866.1	lncRNA	lncRNA	lncRNA	lncRNA	6	173	2	3.14385	3.490695	3.83754	2.75639e-5	1.80772e-5	0.00414819	0.00346221
chr2	58167567	58167667	1125997	0	-	0.28	[0,0.28]	chr2	120896	18	EXON_MRNA	EXON_MRNA:INTRON	FANCL	ENSG00000115392.13	ENST00000696400.1:ENST00000403295.8:ENST00000696492.1:ENST00000427708.7:ENST00000696314.1:ENST00000696315.1:ENST00000696454.1:ENST00000696508.1:ENST00000696548.1:ENST00000696542.1:ENST00000696432.1:ENST00000696319.1:ENST00000403676.6:ENST00000696433.1:ENST00000696434.1:ENST00000696499.1:ENST00000696564.1:ENST00000402135.8:ENST00000696546.1:ENST00000233741.9:ENST00000696316.1:ENST00000696378.1:ENST00000696435.1:ENST00000696493.1:ENST00000696543.1:ENST00000696544.1:ENST00000696545.1:ENST00000696565.1:ENST00000696620.1:ENST00000696621.1:ENST00000696635.1:ENST00000696364.1:ENST00000696634.1:ENST00000696619.1:ENST00000696317.1:ENST00000696622.1:ENST00000696467.1:ENST00000696547.1:ENST00000449070.6:ENST00000696305.1:ENST00000417361.2:ENST00000696338.1:ENST00000696361.1:ENST00000696318.1:ENST00000696371.1:ENST00000696409.1:ENST00000696410.1:ENST00000696455.1:ENST00000696468.1:ENST00000696527.1:ENST00000696567.1:ENST00000696324.1:ENST00000696566.1:ENST00000696623.1:ENST00000446381.6:ENST00000696469.1:ENST00000696624.1:ENST00000696411.1:ENST00000696475.1:ENST00000470506.2:ENST00000696358.1:ENST00000696373.1:ENST00000696394.1:ENST00000696320.1:ENST00000696339.1:ENST00000696395.1:ENST00000696341.1:ENST00000696340.1:ENST00000696374.1:ENST00000696396.1:ENST00000696412.1:ENST00000696375.1:ENST00000696342.1:ENST00000696325.1:ENST00000696399.1:ENST00000696398.1:ENST00000696306.1:ENST00000696397.1:ENST00000696360.1:ENST00000696344.1:ENST00000696343.1:ENST00000696637.1:ENST00000696362.1:ENST00000696528.1:ENST00000696497.1:ENST00000696326.1:ENST00000696638.1:ENST00000696625.1:ENST00000696376.1:ENST00000696510.1:ENST00000696438.1:ENST00000696496.1:ENST00000696509.1:ENST00000696569.1:ENST00000696457.1:ENST00000696458.1:ENST00000696473.1:ENST00000696495.1:ENST00000696415.1:ENST00000696472.1:ENST00000696494.1:ENST00000696363.1:ENST00000696414.1:ENST00000696529.1:ENST00000696471.1:ENST00000696439.1:ENST00000696459.1:ENST00000696498.1:ENST00000696532.1:ENST00000696416.1:ENST00000696530.1:ENST00000696460.1:ENST00000696570.1:ENST00000696531.1:ENST00000696440.1:ENST00000696307.1:ENST00000696401.1:ENST00000696345.1:ENST00000696377.1:ENST00000696417.1:ENST00000696594.1:ENST00000696595.1:ENST00000696379.1:ENST00000696346.1:ENST00000696380.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	42	2	2.27119	3.49068	4.71017	0.070351	0.0114708	0.184298	0.0956037
chr2	197880396	197880496	969860	0	+	0.28	[0,0.28]	chr2	104858	697	INTRON	INTRON	PLCL1	ENSG00000115896.16	ENST00000428675.6:ENST00000435320.1:ENST00000487695.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	42	2	2.27119	3.49068	4.71017	0.070351	0.0114708	0.184298	0.0956037
chr1	8611170	8611269	371713	0	-	0.474747	(0.44,0.476]	chr1	43521	205	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000400907.6:ENST00000656437.1:ENST00000659924.1:ENST00000480342.5:ENST00000514428.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	31	2	2.74372	3.490635	4.23755	0.0263357	0.0153007	0.122221	0.108569
chr10	22317067	22317163	4406550	0	+	0.447917	(0.44,0.476]	chr10	406615	1	SS5_PROX	SS5_PROX:INTRON	COMMD3:COMMD3-BMI1	ENSG00000148444.16:ENSG00000269897.5	ENST00000602574.5:ENST00000475460.6:ENST00000376836.8:ENST00000468179.6:ENST00000602390.5:ENST00000479958.6:ENST00000470045.1:ENST00000456711.5:ENST00000444869.5:ENST00000472610.5:ENST00000496071.5:ENST00000489125.2:ENST00000463409.6:ENST00000463688.6:ENST00000448361.5:ENST00000417470.1:ENST00000468469.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	31	2	2.74372	3.490635	4.23755	0.0263357	0.0153007	0.122221	0.108569
chr10	100232761	100232854	4678636	0	-	0.451613	(0.44,0.476]	chr10	431642	6	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CWF19L1	ENSG00000095485.18	ENST00000468709.5:ENST00000354105.10:ENST00000482452.5:ENST00000478047.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	31	2	2.74372	3.490635	4.23755	0.0263357	0.0153007	0.122221	0.108569
chr17	44056915	44057015	6778297	0	-	0.46	(0.44,0.476]	chr17	668123	163	INTRON	INTRON	LSM12	ENSG00000161654.10	ENST00000591247.6:ENST00000293406.8:ENST00000585388.2	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	2.74372	3.490635	4.23755	0.0263357	0.0153007	0.122221	0.108569
chr8	100700454	100700554	4005355	0	-	0.45	(0.44,0.476]	chr8	366563	138	INTRON	INTRON	PABPC1	ENSG00000070756.17	ENST00000518293.5	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	2.74372	3.490635	4.23755	0.0263357	0.0153007	0.122221	0.108569
chr1	8611269	8611369	371714	0	-	0.45	(0.44,0.476]	chr1	43521	206	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000400907.6:ENST00000656437.1:ENST00000659924.1:ENST00000480342.5:ENST00000514428.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	50	2	1.62896	3.490615	5.35227	0.0546679	8.47974e-4	0.182674	0.0267232
chr3	197082312	197082411	1901319	0	-	0.414141	(0.408,0.44]	chr3	190537	8	INTRON	INTRON	DLG1	ENSG00000075711.21	ENST00000667157.1:ENST00000346964.6:ENST00000656428.1:ENST00000663148.1:ENST00000655488.1:ENST00000357674.9:ENST00000671185.1:ENST00000658701.1:ENST00000667104.1:ENST00000661336.1:ENST00000669565.1:ENST00000670455.1:ENST00000656087.1:ENST00000670366.1:ENST00000653583.1:ENST00000653795.1:ENST00000671246.1:ENST00000661453.1:ENST00000665728.1:ENST00000664564.1:ENST00000653331.1:ENST00000660432.1:ENST00000660898.1:ENST00000657381.1:ENST00000659221.1:ENST00000654737.1:ENST00000669332.1:ENST00000659716.1:ENST00000660553.1:ENST00000664991.1:ENST00000419354.5:ENST00000661440.1:ENST00000667971.1:ENST00000670935.1:ENST00000668578.1:ENST00000666007.1:ENST00000661229.1:ENST00000660237.1:ENST00000657098.1:ENST00000661013.1:ENST00000436682.6:ENST00000452595.5:ENST00000662727.1:ENST00000422288.6:ENST00000448528.6:ENST00000443183.5:ENST00000656944.1:ENST00000392382.6:ENST00000450955.5:ENST00000658155.1:ENST00000669714.1:ENST00000654733.1:ENST00000469073.2:ENST00000419227.5:ENST00000392381.7:ENST00000471733.5:ENST00000493937.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	148	2	3.36795	3.490615	3.61328	2.02232e-4	4.37974e-6	0.0129814	0.00140662
chr13	28233263	28233363	5461781	0	+	0.52	(0.515,0.57]	chr13	523267	125	INTRON	INTRON	PAN3	ENSG00000152520.14	ENST00000503791.5:ENST00000380958.8:ENST00000399613.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	59	2	3.30665	3.49059	3.67453	0.00213226	3.27949e-4	0.041756	0.0160995
chr13	95151742	95151842	5638358	0	-	0.42	(0.408,0.44]	chr13	537060	29	INTRON	INTRON	ABCC4	ENSG00000125257.16	ENST00000645237.2:ENST00000643051.1:ENST00000643842.1:ENST00000646439.1:ENST00000643816.1:ENST00000536256.3:ENST00000643556.1:ENST00000629385.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	33	2	2.27698	3.49054	4.7041	0.0583528	0.00381677	0.167723	0.0562562
chr19	34414446	34414546	7052991	0	+	0.44	(0.408,0.44]	chr19	703460	2	INTRON	INTRON	PDCD2L	ENSG00000126249.8	ENST00000246535.4:ENST00000587385.6:ENST00000587065.2:ENST00000585821.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	33	2	2.27698	3.49054	4.7041	0.0583528	0.00381677	0.167723	0.0562562
chr12	124850286	124850386	5446449	0	-	0.53	(0.515,0.57]	chr12	521285	322	INTRON	INTRON	SCARB1	ENSG00000073060.17	ENST00000339570.9:ENST00000261693.11:ENST00000679605.1:ENST00000681686.1:ENST00000680926.1:ENST00000680556.1:ENST00000680982.1:ENST00000680596.1:ENST00000415380.6:ENST00000681117.1:ENST00000538291.5:ENST00000546215.5:ENST00000535005.5:ENST00000539320.3:ENST00000545493.1:ENST00000541661.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	41	2	2.38476	3.49053	4.5963	0.0110593	0.00370287	0.0873897	0.0561162
chr17	17212884	17212980	6735808	0	-	0.520833	(0.515,0.57]	chr17	660861	8	UTR3	UTR3:EXON_MRNA	FLCN	ENSG00000154803.13	ENST00000285071.9	protein_coding	protein_coding	protein_coding	protein_coding	2	59	2	3.45014	3.490495	3.53085	0.00116948	6.59951e-4	0.0312127	0.0232396
chr3	160497404	160497504	1850261	0	-	0.32	(0.28,0.32]	chr3	186047	25	UTR3	UTR3:EXON_MRNA	KPNA4	ENSG00000186432.10	ENST00000334256.9:ENST00000676866.1	protein_coding	protein_coding	protein_coding	protein_coding	5	84	2	1.53516	3.490495	5.44583	0.0431104	5.8721e-4	0.148082	0.0220073
chr1	173901555	173901655	257082	0	+	0.49	(0.476,0.515]	chr1	30716	156	UTR3	UTR3:EXON_MRNA	ZBTB37	ENSG00000185278.16	ENST00000367701.10	protein_coding	protein_coding	protein_coding	protein_coding	3	90	2	3.17628	3.490415	3.80455	3.6008e-4	3.04782e-4	0.0169207	0.0161236
chr12	102158464	102158563	5205250	0	+	0.414141	(0.408,0.44]	chr12	492839	33	INTRON	INTRON	PARPBP	ENSG00000185480.12	ENST00000327680.7:ENST00000541394.5:ENST00000543784.5:ENST00000392911.6:ENST00000457614.6:ENST00000417507.6:ENST00000412715.3:ENST00000535811.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	33	2	2.36073	3.4904100000000002	4.62009	0.0481658	0.00504155	0.153019	0.0646039
chr14	37167080	37167180	5877958	0	-	0.42	(0.408,0.44]	chr14	558013	2917	INTRON	INTRON	SLC25A21	ENSG00000183032.12	ENST00000331299.6:ENST00000555449.5:ENST00000557611.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	33	2	2.36073	3.4904100000000002	4.62009	0.0481658	0.00504155	0.153019	0.0646039
chr14	37200870	37200969	5695993	0	+	0.434343	(0.408,0.44]	chr14	541575	22	INTRON	INTRON	MIPOL1	ENSG00000151338.20	ENST00000694961.1:ENST00000396294.6:ENST00000537471.6:ENST00000556615.5:ENST00000554114.2:ENST00000695502.1:ENST00000695405.1:ENST00000695503.1:ENST00000684589.1:ENST00000327441.11:ENST00000694962.1:ENST00000539062.6:ENST00000554930.5:ENST00000556451.5:ENST00000694963.1:ENST00000555870.5:ENST00000694964.1:ENST00000556753.5:ENST00000694965.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	33	2	2.36073	3.4904100000000002	4.62009	0.0481658	0.00504155	0.153019	0.0646039
chr16	89337172	89337272	6542046	0	-	0.42	(0.408,0.44]	chr16	634207	83	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000647238.1:ENST00000566858.5:ENST00000644045.1:ENST00000643147.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	33	2	2.36073	3.4904100000000002	4.62009	0.0481658	0.00504155	0.153019	0.0646039
chr17	47656459	47656559	6622642	0	+	0.43	(0.408,0.44]	chr17	646007	2	SS3_PROX	SS3_PROX:INTRON	KPNB1	ENSG00000108424.11	ENST00000535458.6:ENST00000583648.6:ENST00000290158.9:ENST00000577918.5:ENST00000577875.5:ENST00000540627.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	33	2	2.36073	3.4904100000000002	4.62009	0.0481658	0.00504155	0.153019	0.0646039
chr8	81671845	81671945	3979177	0	-	0.41	(0.408,0.44]	chr8	364543	4	INTRON	INTRON	IMPA1	ENSG00000133731.10	ENST00000256108.10:ENST00000311489.8:ENST00000449740.6:ENST00000523942.5:ENST00000518188.5:ENST00000523710.5:ENST00000519964.5:ENST00000521360.5:ENST00000520065.1:ENST00000521979.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	33	2	2.36073	3.4904100000000002	4.62009	0.0481658	0.00504155	0.153019	0.0646039
chr17	30763318	30763418	6590123	0	+	0.35	(0.32,0.35]	chr17	640870	34	INTRON	INTRON	SUZ12P1	ENSG00000264538.7	ENST00000578070.5:ENST00000579526.5:ENST00000690405.1:ENST00000578195.6:ENST00000582557.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	3	56	2	2.14793	3.4904	4.83287	0.0110079	0.0095071	0.0927187	0.0817766
chr11	78404958	78405058	5000259	0	-	0.24	[0,0.28]	chr11	472472	405	INTRON	INTRON	GAB2	ENSG00000033327.13	ENST00000361507.5:ENST00000526030.1:ENST00000528886.5:ENST00000530915.1:ENST00000534823.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	53	2	2.28885	3.49038	4.69191	0.0269474	0.0181093	0.123442	0.114853
chr16	1842373	1842473	6430047	0	-	0.44	(0.408,0.44]	chr16	618346	4	SS3_PROX	SS3_PROX:INTRON	MEIOB:ENSG00000260541	ENSG00000162039.17:ENSG00000260541.1	ENST00000325962.9:ENST00000470044.5:ENST00000397344.7:ENST00000570247.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	2	44	2	2.64829	3.490335	4.33238	0.0218901	0.00400062	0.11491	0.057767
chr16	3685595	3685695	6434149	0	-	0.4	(0.378,0.408]	chr16	619346	2	SS5_PROX	SS5_PROX:INTRON	TRAP1	ENSG00000126602.11	ENST00000246957.10:ENST00000538171.5:ENST00000576335.5:ENST00000571804.5:ENST00000574941.5:ENST00000576106.5:ENST00000571538.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	58	2	1.51223	3.49028	5.46833	0.051139	7.05018e-4	0.176696	0.024224
chr4	163517576	163517676	2078393	0	+	0.4	(0.378,0.408]	chr4	205423	1	SS5_PROX	SS5_PROX:INTRON	TMA16	ENSG00000198498.10	ENST00000509657.5:ENST00000513272.5:ENST00000513134.5:ENST00000358572.10:ENST00000506214.1:ENST00000503148.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	58	2	1.51223	3.49028	5.46833	0.051139	7.05018e-4	0.176696	0.024224
chr1	180703599	180703699	270312	0	+	0.39	(0.378,0.408]	chr1	31620	208	INTRON	INTRON	XPR1	ENSG00000143324.14	ENST00000367590.9:ENST00000367589.3	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	2.9917	3.490185	3.98867	0.0507	0.0068789	0.156383	0.0749442
chr2	28775051	28775151	724882	0	+	0.39	(0.378,0.408]	chr2	83720	225	INTRON	INTRON	PPP1CB	ENSG00000213639.10	ENST00000455580.5:ENST00000420282.5:ENST00000441461.5:ENST00000427786.1:ENST00000358506.6:ENST00000296122.10:ENST00000395366.3:ENST00000464273.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	33	2	2.9917	3.490185	3.98867	0.0507	0.0068789	0.156383	0.0749442
chr8	29047653	29047753	3726443	0	+	0.51	(0.476,0.515]	chr8	346314	2	SS5_PROX	SS5_PROX:INTRON	HMBOX1	ENSG00000147421.18	ENST00000287701.15:ENST00000558662.5:ENST00000397358.7:ENST00000560599.5:ENST00000523613.5:ENST00000521516.5:ENST00000519047.5:ENST00000355231.9:ENST00000524238.3:ENST00000517386.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	93	2	3.27481	3.49017	3.70553	3.44823e-4	2.99781e-4	0.0165103	0.0160591
chr11	47551693	47551793	4950389	0	-	0.58	(0.57,1]	chr11	464246	271	INTRON	INTRON	CELF1	ENSG00000149187.19	ENST00000310513.10:ENST00000687097.1:ENST00000531165.5:ENST00000530151.5:ENST00000525841.5:ENST00000526419.1	protein_coding	protein_coding	protein_coding	protein_coding	3	52	2	3.34751	3.49012	3.63273	0.00122677	1.27941e-5	0.0320791	0.00265999
chr10	119039626	119039724	4704489	0	-	0.510204	(0.476,0.515]	chr10	433921	8	INTRON	INTRON	EIF3A	ENSG00000107581.13	ENST00000369144.8:ENST00000541549.2	protein_coding	protein_coding	protein_coding	protein_coding	2	46	2	2.365	3.490095	4.61519	0.0128901	0.00528365	0.0926667	0.0656295
chr15	56951878	56951978	6032444	0	+	0.48	(0.476,0.515]	chr15	574663	304	INTRON	INTRON	TCF12	ENSG00000140262.18	ENST00000438423.6:ENST00000267811.9:ENST00000333725.10:ENST00000560190.5:ENST00000559609.5:ENST00000558908.5:ENST00000557843.5:ENST00000557947.5:ENST00000561152.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	53	2	1.7425	3.4900949999999997	5.23769	0.0417334	5.17244e-4	0.147007	0.0203753
chr3	184910131	184910231	1583780	0	+	0.5	(0.476,0.515]	chr3	163960	88	INTRON	INTRON	VPS8	ENSG00000156931.16	ENST00000287546.8:ENST00000625842.3:ENST00000436792.6:ENST00000446204.6:ENST00000458721.5:ENST00000492449.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	53	2	1.7425	3.4900949999999997	5.23769	0.0417334	5.17244e-4	0.147007	0.0203753
chr14	31397591	31397687	5860117	0	-	0.46875	(0.44,0.476]	chr14	556933	19	INTRON	INTRON	HEATR5A:ENSG00000203546	ENSG00000129493.15:ENSG00000203546.7	ENST00000543095.7:ENST00000549185.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	126	2	3.05288	3.49	3.92712	1.7642e-4	4.60603e-5	0.01216	0.00552588
chr10	69180762	69180862	4445070	0	+	0.46	(0.44,0.476]	chr10	410073	2	SS5_PROX	SS5_PROX:INTRON	SUPV3L1	ENSG00000156502.14	ENST00000359655.9:ENST00000471069.5:ENST00000483572.5:ENST00000422378.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	31	2	2.29425	3.489945	4.68564	0.0518406	0.00816201	0.176696	0.0766625
chr16	2101560	2101657	6430973	0	-	0.453608	(0.44,0.476]	chr16	618627	1	SS5_PROX	SS5_PROX:INTRON	PKD1	ENSG00000008710.20	ENST00000262304.9:ENST00000423118.5:ENST00000487932.5:ENST00000483731.5:ENST00000415938.7:ENST00000486339.6:ENST00000567946.1:ENST00000562297.5:ENST00000496574.6:ENST00000471603.6:ENST00000480227.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	31	2	2.29425	3.489945	4.68564	0.0518406	0.00816201	0.176696	0.0766625
chr3	179379314	179379413	1567263	0	+	0.444444	(0.44,0.476]	chr3	162139	1	INTRON	INTRON	MFN1	ENSG00000171109.19	ENST00000471841.6:ENST00000357390.8:ENST00000263969.9:ENST00000474903.1:ENST00000480636.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	31	2	2.29425	3.489945	4.68564	0.0518406	0.00816201	0.176696	0.0766625
chr7	77909353	77909452	3345070	0	+	0.464646	(0.44,0.476]	chr7	311534	5	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	PHTF2	ENSG00000006576.17	ENST00000422959.7:ENST00000416283.6:ENST00000307305.12:ENST00000424760.5:ENST00000415251.6:ENST00000275575.11:ENST00000450574.5:ENST00000248550.7:ENST00000454592.5:ENST00000479515.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	31	2	2.29425	3.489945	4.68564	0.0518406	0.00816201	0.176696	0.0766625
chr10	28539864	28539963	4413872	0	+	0.232323	[0,0.28]	chr10	407148	14	INTRON	INTRON	WAC	ENSG00000095787.24	ENST00000680735.1:ENST00000375664.8:ENST00000428935.6:ENST00000651598.1:ENST00000628285.3:ENST00000681112.1:ENST00000679570.1:ENST00000375646.5:ENST00000354911.9:ENST00000347934.8:ENST00000420266.6:ENST00000651885.1:ENST00000651441.1:ENST00000679398.1:ENST00000424454.5:ENST00000442148.6:ENST00000448193.5:ENST00000414108.6:ENST00000679428.1:ENST00000439676.5:ENST00000345541.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	57	2	2.5957	3.489785	4.38387	0.0501911	0.00656974	0.156383	0.0736092
chr1	26735088	26735188	51567	0	+	0.37	(0.35,0.378]	chr1	6565	19	INTRON	INTRON	ARID1A	ENSG00000117713.21	ENST00000430799.7:ENST00000324856.13:ENST00000457599.6:ENST00000374152.7:ENST00000636219.1	protein_coding	protein_coding	protein_coding	protein_coding	2	74	2	3.17244	3.489725	3.80701	0.00487788	2.34133e-4	0.0607461	0.0135358
chr1	32392082	32392182	415172	0	-	0.52	(0.515,0.57]	chr1	50088	48	INTRON	INTRON	BSDC1	ENSG00000160058.19	ENST00000455895.7:ENST00000444377.5:ENST00000341071.11:ENST00000526031.5:ENST00000419121.6:ENST00000446293.6:ENST00000373520.8:ENST00000527513.5:ENST00000527163.5:ENST00000530485.1:ENST00000474414.5:ENST00000530876.5:ENST00000530753.1:ENST00000533084.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	30	2	2.12971	3.489535	4.84936	0.0757903	0.00146032	0.194427	0.0349875
chr17	41994004	41994095	6770634	0	-	0.527473	(0.515,0.57]	chr17	666643	8	INTRON	INTRON	DNAJC7	ENSG00000168259.17	ENST00000316603.12:ENST00000457167.9:ENST00000586335.2:ENST00000674306.1:ENST00000426588.7:ENST00000674355.1:ENST00000674504.1:ENST00000674472.1:ENST00000674233.1:ENST00000674166.1:ENST00000674179.1:ENST00000674481.1:ENST00000674249.1:ENST00000585866.6:ENST00000589576.6:ENST00000674214.1:ENST00000588814.5:ENST00000590774.6:ENST00000674303.1:ENST00000674453.1:ENST00000674252.1:ENST00000674287.1:ENST00000674497.1:ENST00000674411.1:ENST00000585693.2:ENST00000674337.1:ENST00000590847.2:ENST00000674485.1:ENST00000674175.1:ENST00000589810.5:ENST00000588641.6:ENST00000590348.6:ENST00000590886.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	30	2	2.12971	3.489535	4.84936	0.0757903	0.00146032	0.194427	0.0349875
chr3	172168955	172169055	1560844	0	+	0.56	(0.515,0.57]	chr3	161551	200	INTRON	INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000421757.5:ENST00000469491.5:ENST00000336824.8:ENST00000423424.5:ENST00000416957.5:ENST00000478016.1:ENST00000443501.1:ENST00000476794.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	30	2	2.12971	3.489535	4.84936	0.0757903	0.00146032	0.194427	0.0349875
chr7	152088196	152088296	3450141	0	+	0.28	[0,0.28]	chr7	322451	84	INTRON	INTRON	GALNT11	ENSG00000178234.13	ENST00000430044.7:ENST00000482812.1:ENST00000431668.1:ENST00000446096.5:ENST00000447778.5:ENST00000423337.5:ENST00000434507.5:ENST00000415421.5:ENST00000422997.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	52	2	2.15457	3.4894499999999997	4.82433	0.0269306	0.0200334	0.135288	0.109608
chr19	3441067	3441166	7000379	0	+	0.585859	(0.57,1]	chr19	694202	55	INTRON	INTRON	NFIC	ENSG00000141905.19	ENST00000641145.1:ENST00000589123.5:ENST00000395111.7:ENST00000586919.5:ENST00000341919.7:ENST00000443272.3:ENST00000590282.5:ENST00000589537.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	38	2	3.48337	3.48927	3.49517	6.20854e-4	6.03609e-4	0.0226059	0.0223951
chr6	166945363	166945460	3264203	0	-	0.57732000000000006	(0.57,1]	chr6	303029	11	INTRON	INTRON	ENSG00000249141:RNASET2	ENSG00000249141.1:ENSG00000026297.17	ENST00000507747.1:ENST00000508775.6:ENST00000683770.1:ENST00000611959.2:ENST00000620173.5:ENST00000682774.1:ENST00000684236.1:ENST00000683968.1:ENST00000682498.1:ENST00000366855.10:ENST00000421787.5:ENST00000476238.6:ENST00000028008.9:ENST00000478180.6:ENST00000499370.6:ENST00000358165.7:ENST00000496851.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	38	2	3.48337	3.48927	3.49517	6.20854e-4	6.03609e-4	0.0226059	0.0223951
chr19	8465615	8465674	7010977	0	+	0.355932	(0.35,0.378]	chr19	696162	1	SS5_PROX	SS5_PROX:INTRON	HNRNPM	ENSG00000099783.12	ENST00000348943.7:ENST00000600092.5:ENST00000325495.9:ENST00000600806.5:ENST00000620401.4:ENST00000594907.5:ENST00000596984.5:ENST00000601645.5:ENST00000598367.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	45	2	2.49643	3.489135	4.48184	0.0191702	0.00752974	0.108861	0.0773151
chr6	131614923	131615023	3221533	0	-	0.37	(0.35,0.378]	chr6	299424	2	SS5_PROX	SS5_PROX:INTRON	MED23	ENSG00000112282.18	ENST00000354577.8:ENST00000368068.8:ENST00000368060.7:ENST00000368058.5:ENST00000368053.8:ENST00000539158.1	protein_coding	protein_coding	protein_coding	protein_coding	2	45	2	2.49643	3.489135	4.48184	0.0191702	0.00752974	0.108861	0.0773151
chr12	24870634	24870734	5297120	0	-	0.44	(0.408,0.44]	chr12	503853	203	INTRON	INTRON	BCAT1	ENSG00000060982.15	ENST00000261192.12:ENST00000538118.5:ENST00000342945.9:ENST00000539282.5:ENST00000539780.5:ENST00000544418.1:ENST00000612790.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:processed_transcript	2	43	2	2.55103	3.48908	4.42713	0.0173083	0.00587353	0.104099	0.0690758
chr2	98462679	98462779	833057	0	+	0.44	(0.408,0.44]	chr2	93413	172	INTRON	INTRON	INPP4A	ENSG00000040933.16	ENST00000409016.8:ENST00000409851.8:ENST00000074304.9:ENST00000409463.5:ENST00000409540.7	protein_coding	protein_coding	protein_coding	protein_coding	2	43	2	2.55103	3.48908	4.42713	0.0173083	0.00587353	0.104099	0.0690758
chr5	138027088	138027188	2730746	0	-	0.41	(0.408,0.44]	chr5	257016	55	INTRON	INTRON	FAM13B	ENSG00000031003.11	ENST00000689681.1:ENST00000033079.7:ENST00000425075.6:ENST00000420893.6:ENST00000514310.5:ENST00000502471.5:ENST00000509596.5:ENST00000508403.5:ENST00000505961.1:ENST00000510804.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	43	2	2.55103	3.48908	4.42713	0.0173083	0.00587353	0.104099	0.0690758
chr1	161768001	161768101	235862	0	+	0.53	(0.515,0.57]	chr1	28516	8	INTRON	INTRON	ATF6	ENSG00000118217.7	ENST00000680688.1:ENST00000679853.1:ENST00000681738.1:ENST00000681801.1:ENST00000681779.1:ENST00000367942.4:ENST00000681001.1:ENST00000679886.1:ENST00000681169.1:ENST00000681492.1:ENST00000680481.1:ENST00000680180.1:ENST00000681187.1:ENST00000680462.1:ENST00000680633.1:ENST00000681557.1:ENST00000681912.1:ENST00000679833.1:ENST00000681541.1:ENST00000681036.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	28	2	2.56306	3.48902	4.41498	0.0247751	0.0106866	0.131869	0.0861859
chr11	3749430	3749529	4894681	0	-	0.525253	(0.515,0.57]	chr11	458870	44	INTRON	INTRON	NUP98	ENSG00000110713.17	ENST00000359171.8:ENST00000324932.12:ENST00000650171.1:ENST00000355260.7:ENST00000397004.8:ENST00000397007.8:ENST00000527104.5:ENST00000529379.1:ENST00000397013.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	28	2	2.56306	3.48902	4.41498	0.0247751	0.0106866	0.131869	0.0861859
chr11	67127853	67127953	4812531	0	+	0.53	(0.515,0.57]	chr11	448100	61	INTRON	INTRON	KDM2A	ENSG00000173120.15	ENST00000529006.7:ENST00000398645.6:ENST00000532436.5:ENST00000527157.1:ENST00000308783.9	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	28	2	2.56306	3.48902	4.41498	0.0247751	0.0106866	0.131869	0.0861859
chr18	10544445	10544544	6874016	0	+	0.525253	(0.515,0.57]	chr18	680954	37	INTRON	INTRON	NAPG	ENSG00000134265.13	ENST00000580483.5:ENST00000322897.11:ENST00000580224.5:ENST00000583367.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	28	2	2.56306	3.48902	4.41498	0.0247751	0.0106866	0.131869	0.0861859
chr19	2448418	2448517	7116097	0	-	0.545455	(0.515,0.57]	chr19	715394	35	INTRON	INTRON	LMNB2	ENSG00000176619.13	ENST00000325327.4	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	2.56306	3.48902	4.41498	0.0247751	0.0106866	0.131869	0.0861859
chr2	61438303	61438403	1130229	0	-	0.52	(0.515,0.57]	chr2	121499	171	INTRON	INTRON	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000453133.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	28	2	2.56306	3.48902	4.41498	0.0247751	0.0106866	0.131869	0.0861859
chr3	185823413	185823513	1886337	0	-	0.52	(0.515,0.57]	chr3	188588	2	SS3_PROX	SS3_PROX:INTRON	IGF2BP2	ENSG00000073792.16	ENST00000382199.7:ENST00000346192.7:ENST00000457616.6:ENST00000466476.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	28	2	2.56306	3.48902	4.41498	0.0247751	0.0106866	0.131869	0.0861859
chr4	24530419	24530512	2118455	0	-	0.55914	(0.515,0.57]	chr4	209191	8	EXON_LNCRNA	EXON_LNCRNA:INTRON	DHX15	ENSG00000109606.13	ENST00000510645.5:ENST00000336812.5:ENST00000508032.5:ENST00000512903.1:ENST00000513036.5:ENST00000508368.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	28	2	2.56306	3.48902	4.41498	0.0247751	0.0106866	0.131869	0.0861859
chr7	96231412	96231511	3575347	0	-	0.535354	(0.515,0.57]	chr7	333059	113	INTRON	INTRON	SLC25A13	ENSG00000004864.14	ENST00000265631.10:ENST00000416240.6:ENST00000472162.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	28	2	2.56306	3.48902	4.41498	0.0247751	0.0106866	0.131869	0.0861859
chr8	127833467	127833567	3860436	0	+	0.54	(0.515,0.57]	chr8	355402	132	INTRON	INTRON	PVT1	ENSG00000249859.13	ENST00000667305.1:ENST00000690350.1:ENST00000653522.1:ENST00000664214.1:ENST00000664139.1:ENST00000661830.1:ENST00000657289.1:ENST00000504719.7:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000656880.1:ENST00000660200.1:ENST00000669132.1:ENST00000657211.1:ENST00000653845.1:ENST00000517525.2:ENST00000665856.1:ENST00000651587.1:ENST00000692980.1:ENST00000666353.1:ENST00000657183.1:ENST00000654324.1:ENST00000658556.1:ENST00000657693.1:ENST00000666080.1:ENST00000667539.1:ENST00000521951.1:ENST00000524165.6:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000664293.1:ENST00000657297.1:ENST00000662410.1:ENST00000670795.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000654091.1:ENST00000523328.6:ENST00000657356.1:ENST00000523427.2:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000662061.1:ENST00000667204.1:ENST00000656491.1:ENST00000667714.1:ENST00000654105.1:ENST00000665721.1:ENST00000518528.2:ENST00000669416.1:ENST00000660438.1:ENST00000661160.1:ENST00000659326.1:ENST00000665246.1:ENST00000657384.1:ENST00000666842.1:ENST00000517790.2:ENST00000522963.6:ENST00000654369.1:ENST00000661625.1:ENST00000657596.1:ENST00000664995.1:ENST00000656532.1:ENST00000661988.1:ENST00000657517.1:ENST00000670714.1:ENST00000669951.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000656693.1:ENST00000668123.1:ENST00000666776.1:ENST00000664299.1:ENST00000669272.1:ENST00000659912.1:ENST00000670532.1:ENST00000660896.1:ENST00000667149.1:ENST00000656396.1:ENST00000523068.2	lncRNA	lncRNA	lncRNA	lncRNA	1	28	2	2.56306	3.48902	4.41498	0.0247751	0.0106866	0.131869	0.0861859
chr7	107129890	107129989	3378022	0	+	0.444444	(0.44,0.476]	chr7	316264	12	INTRON	INTRON	PRKAR2B	ENSG00000005249.13	ENST00000265717.5:ENST00000393613.6:ENST00000488792.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	68	2	3.22192	3.489	3.75608	0.00360821	2.6487e-4	0.0533855	0.0144071
chr8	38317474	38317570	3936765	0	-	0.364583	(0.35,0.378]	chr8	360773	12	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	NSD3	ENSG00000147548.17	ENST00000317025.13:ENST00000433384.6:ENST00000527502.5:ENST00000316985.7:ENST00000525081.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	52	2	1.76773	3.4889550000000003	5.21018	0.0373863	0.00228003	0.155878	0.0426265
chr11	118782179	118782278	5046280	0	-	0.313131	(0.28,0.32]	chr11	475799	6	INTRON	INTRON	DDX6	ENSG00000110367.14	ENST00000534980.7:ENST00000620157.4:ENST00000526070.2:ENST00000525082.1:ENST00000531971.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	39	2	2.45545	3.48889	4.52233	0.0438092	0.0129279	0.14901	0.0990564
chr6	85592024	85592120	3150927	0	-	0.28125	(0.28,0.32]	chr6	293851	3	INTRON	INTRON	ENSG00000271793:SNX14	ENSG00000271793.2:ENSG00000135317.14	ENST00000682083.1:ENST00000683074.1:ENST00000681965.1:ENST00000682171.1:ENST00000684150.1:ENST00000683785.1:ENST00000682497.1:ENST00000684647.1:ENST00000683643.1:ENST00000682023.1:ENST00000682022.1:ENST00000683542.1:ENST00000683126.1:ENST00000683857.1:ENST00000683898.1:ENST00000682854.1:ENST00000682491.1:ENST00000682174.1:ENST00000684239.1:ENST00000682939.1:ENST00000684570.1:ENST00000682057.1:ENST00000682878.1:ENST00000683880.1:ENST00000684422.1:ENST00000682504.1:ENST00000683726.1:ENST00000684680.1:ENST00000683196.1:ENST00000683458.1:ENST00000683803.1:ENST00000684281.1:ENST00000682991.1:ENST00000683754.1:ENST00000683481.1:ENST00000682455.1:ENST00000682034.1:ENST00000684451.1:ENST00000683583.1:ENST00000682776.1:ENST00000683873.1:ENST00000683878.1:ENST00000683195.1:ENST00000682995.1:ENST00000682374.1:ENST00000683698.1:ENST00000682454.1:ENST00000682694.1:ENST00000682412.1:ENST00000682682.1:ENST00000346348.7:ENST00000314673.8:ENST00000682633.1:ENST00000683085.1:ENST00000682688.1:ENST00000684319.1:ENST00000683577.1:ENST00000682709.1:ENST00000684299.1:ENST00000682133.1:ENST00000682594.1:ENST00000683473.1:ENST00000682106.1:ENST00000683364.1:ENST00000683436.1:ENST00000684220.1:ENST00000683909.1:ENST00000684118.1:ENST00000681981.1:ENST00000682738.1:ENST00000509338.6:ENST00000684717.1:ENST00000682660.1:ENST00000683073.1:ENST00000515216.6:ENST00000684581.1:ENST00000683479.1:ENST00000682464.1:ENST00000684108.1:ENST00000682514.1:ENST00000684017.1:ENST00000684273.1:ENST00000513865.5:ENST00000505648.5:ENST00000369627.6:ENST00000508658.6:ENST00000683097.1:ENST00000683541.1:ENST00000683759.1:ENST00000369635.7:ENST00000684462.1:ENST00000682168.1:ENST00000513869.2:ENST00000514419.6:ENST00000683999.1:ENST00000503906.1:ENST00000683727.1:ENST00000684183.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	39	2	2.45545	3.48889	4.52233	0.0438092	0.0129279	0.14901	0.0990564
chr8	98613270	98613370	3998029	0	-	0.32	(0.28,0.32]	chr8	366060	111	INTRON	INTRON	STK3	ENSG00000104375.17	ENST00000617590.1:ENST00000419617.7:ENST00000523601.5:ENST00000518582.5:ENST00000518165.5:ENST00000521649.5:ENST00000424861.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	39	2	2.45545	3.48889	4.52233	0.0438092	0.0129279	0.14901	0.0990564
chr13	111279171	111279271	5545972	0	+	0.47	(0.44,0.476]	chr13	529856	11	INTRON	INTRON	ARHGEF7	ENSG00000102606.19	ENST00000317133.9:ENST00000375739.6:ENST00000375741.6:ENST00000646102.2:ENST00000469877.5:ENST00000466143.5:ENST00000218789.9:ENST00000375736.8:ENST00000426073.6:ENST00000375723.5:ENST00000478679.5:ENST00000544132.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	41	2	2.14573	3.488875	4.83202	0.0238593	0.00525002	0.129075	0.0633615
chr17	49718444	49718544	6793691	0	-	0.46	(0.44,0.476]	chr17	670392	4	SS3_PROX	SS3_PROX:INTRON	FAM117A	ENSG00000121104.8	ENST00000240364.7:ENST00000513602.5:ENST00000503573.5:ENST00000511743.5:ENST00000503855.5:ENST00000514018.5:ENST00000505159.5:ENST00000506156.1:ENST00000515240.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	41	2	2.14573	3.488875	4.83202	0.0238593	0.00525002	0.129075	0.0633615
chr18	23574359	23574455	6958840	0	-	0.46875	(0.44,0.476]	chr18	688389	4	INTRON	INTRON	NPC1	ENSG00000141458.13	ENST00000269228.10:ENST00000540608.5:ENST00000587223.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	41	2	2.14573	3.488875	4.83202	0.0238593	0.00525002	0.129075	0.0633615
chr21	46547830	46547926	7423420	0	+	0.447917	(0.44,0.476]	chr21	757083	4	INTRON	INTRON	DIP2A	ENSG00000160305.18	ENST00000417564.3:ENST00000651436.1:ENST00000400274.5:ENST00000457905.7	protein_coding	protein_coding	protein_coding	protein_coding	2	41	2	2.14573	3.488875	4.83202	0.0238593	0.00525002	0.129075	0.0633615
chr4	128081566	128081664	2042801	0	+	0.469388	(0.44,0.476]	chr4	202862	33	INTRON	INTRON	LARP1B	ENSG00000138709.19	ENST00000512292.5:ENST00000326639.11:ENST00000508819.5:ENST00000394288.7:ENST00000432347.6:ENST00000649983.1:ENST00000650359.1:ENST00000648358.1:ENST00000507377.1	protein_coding	protein_coding	protein_coding	protein_coding	2	41	2	2.14573	3.488875	4.83202	0.0238593	0.00525002	0.129075	0.0633615
chr6	33263183	33263283	3082330	0	-	0.47	(0.44,0.476]	chr6	288176	3	SS5_PROX	SS5_PROX:INTRON	VPS52	ENSG00000223501.9	ENST00000478934.5:ENST00000482399.5:ENST00000445902.3:ENST00000495981.5:ENST00000493674.5:ENST00000471309.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	41	2	2.14573	3.488875	4.83202	0.0238593	0.00525002	0.129075	0.0633615
chr1	113078637	113078737	188148	0	+	0.42	(0.408,0.44]	chr1	20854	46	INTRON	INTRON	LRIG2	ENSG00000198799.12	ENST00000361127.6	protein_coding	protein_coding	protein_coding	protein_coding	7	83	2	1.38717	3.48881	5.59045	0.0391815	9.6776e-5	0.143072	0.00826486
chr3	187012413	187012512	1587001	0	+	0.474747	(0.44,0.476]	chr3	164349	60	INTRON	INTRON	ST6GAL1	ENSG00000073849.16	ENST00000676786.1:ENST00000169298.8:ENST00000457772.6:ENST00000455441.5:ENST00000427315.5:ENST00000677292.1:ENST00000458216.5:ENST00000430309.5:ENST00000417392.5:ENST00000438590.5:ENST00000448408.5:ENST00000676633.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	41	2	2.0776	3.4888000000000003	4.9	0.0292951	0.00423315	0.141862	0.0572185
chr1	6617552	6617649	5455	0	+	0.536082	(0.515,0.57]	chr1	1068	3	INTRON	INTRON	PHF13	ENSG00000116273.6	ENST00000377648.5:ENST00000495385.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	30	2	2.68833	3.4887699999999997	4.28921	0.0184931	0.00990051	0.108861	0.0877296
chr16	84732689	84732770	6410231	0	+	0.555556	(0.515,0.57]	chr16	615277	1	SS3_PROX	SS3_PROX:SS5_PROX:INTRON	USP10	ENSG00000103194.16	ENST00000562743.5:ENST00000540269.6:ENST00000563892.5:ENST00000562092.1:ENST00000569511.5:ENST00000219473.12:ENST00000570191.5:ENST00000563048.5:ENST00000562283.5:ENST00000563386.5:ENST00000569038.5:ENST00000570053.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	30	2	2.68833	3.4887699999999997	4.28921	0.0184931	0.00990051	0.108861	0.0877296
chr20	47337157	47337257	7349316	0	-	0.55	(0.515,0.57]	chr20	749346	182	INTRON	INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000435836.5:ENST00000446894.5:ENST00000441977.1	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	2.68833	3.4887699999999997	4.28921	0.0184931	0.00990051	0.108861	0.0877296
chr20	63904974	63905074	7301057	0	+	0.55	(0.515,0.57]	chr20	743135	93	INTRON	INTRON	DNAJC5	ENSG00000101152.11	ENST00000360864.9:ENST00000470551.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	30	2	2.68833	3.4887699999999997	4.28921	0.0184931	0.00990051	0.108861	0.0877296
chr7	102667564	102667664	3589198	0	-	0.57	(0.515,0.57]	chr7	335096	3	SS3_PROX	SS3_PROX:INTRON	ENSG00000267645:POLR2J2	ENSG00000267645.5:ENSG00000228049.7	ENST00000476151.5:ENST00000358438.6:ENST00000333432.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	30	2	2.68833	3.4887699999999997	4.28921	0.0184931	0.00990051	0.108861	0.0877296
chr22	19805469	19805567	7555129	0	-	0.653061	(0.57,1]	chr22	772419	29	INTRON	INTRON	GNB1L	ENSG00000185838.14	ENST00000329517.11:ENST00000403325.5:ENST00000405009.5:ENST00000460402.5:ENST00000481086.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	21	2	2.53383	3.488745	4.44366	0.02547	0.00210922	0.12011	0.0425419
chr2	70247804	70247904	1152461	0	-	0.41	(0.408,0.44]	chr2	123109	113	INTRON	INTRON	C2orf42:TIA1	ENSG00000115998.8:ENSG00000116001.17	ENST00000470096.1:ENST00000415783.6:ENST00000433529.7:ENST00000282574.8:ENST00000445587.5:ENST00000416149.6:ENST00000474809.6:ENST00000477044.6:ENST00000496452.5:ENST00000481650.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	91	2	3.31435	3.488725	3.6631	6.21419e-4	1.71418e-4	0.0229151	0.0113605
chr18	9710843	9710943	6871797	0	+	0.34	(0.32,0.35]	chr18	680774	20	INTRON	INTRON	RAB31	ENSG00000168461.13	ENST00000578734.5:ENST00000578921.6:ENST00000581109.1:ENST00000583137.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	45	2	2.01768	3.488695	4.95971	0.0361337	0.00663522	0.152563	0.0703181
chr19	43736905	43737000	7188013	0	-	0.589474	(0.57,1]	chr19	727545	21	INTRON	INTRON	SMG9	ENSG00000105771.14	ENST00000270066.11:ENST00000601170.5:ENST00000597598.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	21	2	2.66438	3.488575	4.31277	0.0171563	0.00346264	0.104099	0.0539802
chr20	25218914	25219014	7249664	0	+	0.59	(0.57,1]	chr20	736183	3	SS5_PROX	SS5_PROX:INTRON	ENTPD6	ENSG00000197586.13	ENST00000354989.9:ENST00000360031.6:ENST00000376652.9:ENST00000433417.5:ENST00000433259.6:ENST00000425813.5:ENST00000447877.5:ENST00000376666.3:ENST00000471478.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	21	2	2.66438	3.488575	4.31277	0.0171563	0.00346264	0.104099	0.0539802
chr3	155803850	155803950	1843978	0	-	0.59	(0.57,1]	chr3	185513	4	SS5_PROX	SS5_PROX:INTRON	C3orf33	ENSG00000174928.16	ENST00000340171.7:ENST00000482061.6:ENST00000534941.2:ENST00000465810.1:ENST00000486435.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	21	2	2.66438	3.488575	4.31277	0.0171563	0.00346264	0.104099	0.0539802
chr5	98922842	98922942	2684013	0	-	0.59	(0.57,1]	chr5	253957	174	INTRON	INTRON	CHD1	ENSG00000153922.11	ENST00000614616.5:ENST00000284049.7	protein_coding	protein_coding	protein_coding	protein_coding	1	21	2	2.66438	3.488575	4.31277	0.0171563	0.00346264	0.104099	0.0539802
chr1	19202115	19202215	386761	0	-	0.5	(0.476,0.515]	chr1	46142	3	SS3_PROX	SS3_PROX:INTRON	UBR4	ENSG00000127481.15	ENST00000375254.8	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	2.73205	3.48853	4.24501	0.0247713	0.0159328	0.12011	0.109464
chr1	109395918	109396016	521002	0	-	0.5	(0.476,0.515]	chr1	61205	27	INTRON	INTRON	SORT1	ENSG00000134243.12	ENST00000256637.8:ENST00000471996.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	31	2	2.73205	3.48853	4.24501	0.0247713	0.0159328	0.12011	0.109464
chr12	872243	872342	5057388	0	+	0.50505	(0.476,0.515]	chr12	477488	5	INTRON	INTRON	WNK1	ENSG00000060237.19	ENST00000315939.11:ENST00000340908.9:ENST00000535572.5:ENST00000537687.5:ENST00000530271.6:ENST00000675631.1:ENST00000676347.1:ENST00000545285.5:ENST00000535698.1:ENST00000674810.1:ENST00000574679.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	31	2	2.73205	3.48853	4.24501	0.0247713	0.0159328	0.12011	0.109464
chr3	98841861	98841961	1755653	0	-	0.49	(0.476,0.515]	chr3	178100	161	INTRON	INTRON	DCBLD2	ENSG00000057019.16	ENST00000326840.11:ENST00000326857.9:ENST00000469648.5:ENST00000486004.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	31	2	2.73205	3.48853	4.24501	0.0247713	0.0159328	0.12011	0.109464
chr5	175491651	175491735	2550646	0	+	0.488095	(0.476,0.515]	chr5	243498	1	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SFXN1	ENSG00000164466.13	ENST00000507017.5:ENST00000321442.10:ENST00000508290.5:ENST00000507395.1:ENST00000515791.1:ENST00000502393.5:ENST00000507823.5:ENST00000513725.1:ENST00000506963.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	31	2	2.73205	3.48853	4.24501	0.0247713	0.0159328	0.12011	0.109464
chr9	89356425	89356525	4153420	0	+	0.49	(0.476,0.515]	chr9	378875	52	INTRON	INTRON	SECISBP2	ENSG00000187742.15	ENST00000375807.8:ENST00000339901.8:ENST00000534113.6:ENST00000498819.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	31	2	2.73205	3.48853	4.24501	0.0247713	0.0159328	0.12011	0.109464
chr19	55019223	55019323	7100350	0	+	0.53	(0.515,0.57]	chr19	712212	118	INTRON	INTRON	GP6-AS1	ENSG00000267265.6	ENST00000593060.5:ENST00000586845.1	lncRNA	lncRNA	lncRNA	lncRNA	5	57	2	1.54678	3.488485	5.43019	0.0324987	2.60422e-4	0.145164	0.0148796
chr19	10677610	10677710	7013454	0	+	0.49	(0.476,0.515]	chr19	696786	3	SS5_PROX	SS5_PROX:INTRON	ILF3	ENSG00000129351.17	ENST00000449870.5:ENST00000587928.5:ENST00000407004.7:ENST00000589998.5:ENST00000590009.5:ENST00000587505.5:ENST00000589052.5:ENST00000250241.12:ENST00000590261.5:ENST00000588657.5:ENST00000592763.5:ENST00000587840.5:ENST00000589416.5:ENST00000585835.1:ENST00000589485.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	44	2	2.05154	3.4884150000000003	4.92529	0.0336015	0.00180221	0.134145	0.0392772
chrX	124034080	124034178	7717483	0	+	0.285714	(0.28,0.32]	chrX	789506	26	INTRON	INTRON	STAG2	ENSG00000101972.20	ENST00000218089.13:ENST00000455404.5:ENST00000483575.5:ENST00000687810.1:ENST00000687071.1:ENST00000469481.1:ENST00000371160.5:ENST00000435103.5:ENST00000687852.1:ENST00000371145.8:ENST00000692982.1:ENST00000371157.7:ENST00000691035.1:ENST00000686802.1:ENST00000691383.1:ENST00000686127.1:ENST00000371144.7:ENST00000458176.5:ENST00000466748.5:ENST00000471107.1:ENST00000428941.5:ENST00000435215.5:ENST00000394478.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	58	2	1.98806	3.48839	4.98872	0.0199553	0.00838468	0.120668	0.0774402
chr15	40597168	40597267	6002459	0	+	0.383838	(0.378,0.408]	chr15	570845	24	INTRON	INTRON	KNL1	ENSG00000137812.21	ENST00000346991.9:ENST00000528975.5:ENST00000614337.4:ENST00000399668.7:ENST00000532056.5:ENST00000533001.1:ENST00000534204.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	46	2	2.05897	3.488365	4.91776	0.0339294	0.00196368	0.134508	0.0411469
chr13	95215069	95215168	5639008	0	-	0.383838	(0.378,0.408]	chr13	537151	39	INTRON	INTRON	ABCC4	ENSG00000125257.16	ENST00000645237.2:ENST00000643051.1:ENST00000643842.1:ENST00000646439.1:ENST00000643816.1:ENST00000536256.3:ENST00000643556.1:ENST00000629385.1:ENST00000642524.1:ENST00000645532.1:ENST00000644471.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	42	2	2.23831	3.4883499999999996	4.73839	0.0179575	0.00837252	0.114265	0.0774402
chr13	97233631	97233731	5518511	0	+	0.4	(0.378,0.408]	chr13	527710	107	INTRON	INTRON	MBNL2	ENSG00000139793.20	ENST00000397601.5:ENST00000343600.9:ENST00000376673.8:ENST00000679496.1:ENST00000685165.1:ENST00000345429.10:ENST00000469707.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	42	2	2.23831	3.4883499999999996	4.73839	0.0179575	0.00837252	0.114265	0.0774402
chr3	73056140	73056240	1452551	0	+	0.38	(0.378,0.408]	chr3	152969	84	INTRON	INTRON	PPP4R2	ENSG00000163605.15	ENST00000482242.5:ENST00000356692.10:ENST00000470976.1:ENST00000488810.5:ENST00000476505.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	42	2	2.23831	3.4883499999999996	4.73839	0.0179575	0.00837252	0.114265	0.0774402
chr3	57891502	57891600	1437005	0	+	0.326531	(0.32,0.35]	chr3	151751	4	INTRON	INTRON	SLMAP	ENSG00000163681.16	ENST00000295951.7:ENST00000659926.1:ENST00000659705.1:ENST00000671191.1:ENST00000667800.1:ENST00000428312.6:ENST00000664084.1:ENST00000657480.1:ENST00000295952.7:ENST00000383718.7:ENST00000449503.6:ENST00000417128.6:ENST00000465203.5:ENST00000475055.1:ENST00000670768.1:ENST00000416658.5:ENST00000472546.5:ENST00000459654.5:ENST00000494088.6:ENST00000662629.1:ENST00000438794.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	50	2	2.04237	3.48831	4.93425	0.0375542	0.00281048	0.140222	0.0488779
chr6	7297709	7297765	3053232	0	-	0.25	[0,0.28]	chr6	283953	1	SS5_PROX	SS5_PROX:INTRON	SSR1	ENSG00000124783.14	ENST00000474597.5:ENST00000650389.1:ENST00000244763.9:ENST00000397511.6:ENST00000489567.5:ENST00000479365.5:ENST00000479485.5:ENST00000462112.1	protein_coding	protein_coding	protein_coding	protein_coding	3	63	2	1.91898	3.4882299999999997	5.05748	0.0266433	0.0113653	0.134413	0.0886611
chr4	126652279	126652379	2237232	0	-	0.38	(0.378,0.408]	chr4	219023	1868	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	14	368	2	3.10723	3.4882	3.86917	8.90197e-7	6.3578e-7	5.37028e-4	4.69598e-4
chr10	50104343	50104443	4433746	0	+	0.42	(0.408,0.44]	chr10	408898	2	SS5_PROX	SS5_PROX:INTRON	WASHC2A	ENSG00000099290.17	ENST00000611324.4:ENST00000351071.11:ENST00000314664.12:ENST00000434114.6:ENST00000282633.10:ENST00000399339.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	31	2	2.74518	3.4880699999999996	4.23096	0.0278028	0.0152229	0.123904	0.108535
chr10	73611726	73611826	4651340	0	-	0.44	(0.408,0.44]	chr10	428091	1	SS3_PROX	SS3_PROX:INTRON	USP54	ENSG00000166348.20	ENST00000339859.8:ENST00000689425.1:ENST00000685297.1:ENST00000422491.7:ENST00000433394.1:ENST00000474929.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	31	2	2.74518	3.4880699999999996	4.23096	0.0278028	0.0152229	0.123904	0.108535
chr11	3729497	3729597	4894479	0	-	0.44	(0.408,0.44]	chr11	458852	39	INTRON	INTRON	NUP98	ENSG00000110713.17	ENST00000359171.8:ENST00000324932.12:ENST00000650171.1:ENST00000355260.7:ENST00000397004.8:ENST00000397007.8:ENST00000527104.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	31	2	2.74518	3.4880699999999996	4.23096	0.0278028	0.0152229	0.123904	0.108535
chr12	79833784	79833884	5375516	0	-	0.44	(0.408,0.44]	chr12	512772	9	INTRON	INTRON	PPP1R12A	ENSG00000058272.19	ENST00000261207.9:ENST00000450142.7:ENST00000437004.6:ENST00000546369.5:ENST00000550107.5:ENST00000547330.5:ENST00000550510.5:ENST00000548318.1	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	2.74518	3.4880699999999996	4.23096	0.0278028	0.0152229	0.123904	0.108535
chr19	5068015	5068115	7004414	0	+	0.42	(0.408,0.44]	chr19	694835	200	INTRON	INTRON	KDM4B	ENSG00000127663.15	ENST00000159111.9:ENST00000611640.4:ENST00000381759.8:ENST00000536461.5:ENST00000592175.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	31	2	2.74518	3.4880699999999996	4.23096	0.0278028	0.0152229	0.123904	0.108535
chr11	90213699	90213792	5016446	0	-	0.387097	(0.378,0.408]	chr11	473206	4	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CHORDC1	ENSG00000110172.12	ENST00000320585.11:ENST00000457199.6:ENST00000533724.5:ENST00000525317.5:ENST00000533772.5:ENST00000530765.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	42	2	1.97143	3.48801	5.00459	0.0398704	0.00371142	0.161534	0.0535094
chr16	21430116	21430215	6460615	0	-	0.363636	(0.35,0.378]	chr16	623218	43	INTRON	INTRON	NPIPB3	ENSG00000169246.16	ENST00000521589.5:ENST00000534903.1:ENST00000545358.5:ENST00000543368.1:ENST00000544154.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	78	2	1.32176	3.487965	5.65417	0.0452456	4.33402e-4	0.163924	0.0190829
chr15	68182549	68182645	6057253	0	+	0.510417	(0.476,0.515]	chr15	576626	8	INTRON	INTRON	PIAS1	ENSG00000033800.14	ENST00000249636.11:ENST00000545237.1:ENST00000563996.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	31	2	2.28264	3.48792	4.6932	0.0534132	0.00753088	0.179876	0.074841
chr3	47109798	47109898	1681054	0	-	0.49	(0.476,0.515]	chr3	171593	33	INTRON	INTRON	SETD2	ENSG00000181555.22	ENST00000691544.1:ENST00000638947.2:ENST00000686876.1:ENST00000431180.5:ENST00000409792.4:ENST00000330022.11:ENST00000686773.1:ENST00000685005.1:ENST00000690461.1:ENST00000685505.1:ENST00000692883.1:ENST00000693321.1:ENST00000688290.1:ENST00000691902.1:ENST00000690157.1:ENST00000692362.1:ENST00000445387.5:ENST00000685399.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	31	2	2.28264	3.48792	4.6932	0.0534132	0.00753088	0.179876	0.074841
chr6	5644214	5644314	2796504	0	+	0.51	(0.476,0.515]	chr6	263693	305	INTRON	INTRON	FARS2	ENSG00000145982.13	ENST00000324331.10:ENST00000648580.1:ENST00000274680.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	31	2	2.28264	3.48792	4.6932	0.0534132	0.00753088	0.179876	0.074841
chr6	15316625	15316725	2823653	0	+	0.48	(0.476,0.515]	chr6	265192	17	INTRON	INTRON	JARID2	ENSG00000008083.14	ENST00000341776.7:ENST00000397311.4	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	2.28264	3.48792	4.6932	0.0534132	0.00753088	0.179876	0.074841
chr8	99159741	99159841	3812741	0	+	0.49	(0.476,0.515]	chr8	353158	26	INTRON	INTRON	VPS13B	ENSG00000132549.20	ENST00000496144.5:ENST00000683334.1:ENST00000682853.1:ENST00000357162.7:ENST00000358544.7:ENST00000683619.1:ENST00000683869.1:ENST00000682153.1:ENST00000682358.1:ENST00000682145.1:ENST00000355155.6:ENST00000682234.1:ENST00000683486.1:ENST00000684308.1:ENST00000521932.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	31	2	2.28264	3.48792	4.6932	0.0534132	0.00753088	0.179876	0.074841
chrX	68522838	68522917	7674015	0	+	0.443038	(0.44,0.476]	chrX	785434	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	YIPF6	ENSG00000181704.12	ENST00000451537.5:ENST00000374622.3:ENST00000374643.7:ENST00000462683.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	45	2	2.73781	3.48768	4.23755	0.0263357	0.00276493	0.122221	0.04867
chr10	22555865	22555965	4578901	0	-	0.31	(0.28,0.32]	chr10	421979	47	INTRON	INTRON	PIP4K2A	ENSG00000150867.14	ENST00000376573.9:ENST00000323883.11:ENST00000545335.5:ENST00000604912.1	protein_coding	protein_coding	protein_coding	protein_coding	2	48	2	2.24061	3.4876750000000003	4.73474	0.0194267	0.0162835	0.119831	0.101453
chr4	128079917	128080014	2042784	0	+	0.298969	(0.28,0.32]	chr4	202862	16	INTRON	INTRON	LARP1B	ENSG00000138709.19	ENST00000512292.5:ENST00000326639.11:ENST00000508819.5:ENST00000394288.7:ENST00000432347.6:ENST00000649983.1:ENST00000650359.1:ENST00000648358.1:ENST00000507377.1	protein_coding	protein_coding	protein_coding	protein_coding	2	48	2	2.24061	3.4876750000000003	4.73474	0.0194267	0.0162835	0.119831	0.101453
chr1	47217073	47217171	445290	0	-	0.510204	(0.476,0.515]	chr1	53935	9	UTR3	UTR3:EXON_MRNA	TAL1	ENSG00000162367.12	ENST00000371884.6:ENST00000691006.1:ENST00000294339.3	protein_coding	protein_coding	protein_coding	protein_coding	7	74	2	1.31026	3.487655	5.66505	0.046104	2.08835e-4	0.165623	0.0131276
chr18	9491919	9492019	6871298	0	+	0.24	[0,0.28]	chr18	680716	121	INTRON	INTRON	RALBP1	ENSG00000017797.13	ENST00000019317.8:ENST00000585015.6:ENST00000383432.8:ENST00000609094.2:ENST00000458039.3:ENST00000577221.1	protein_coding	protein_coding	protein_coding	protein_coding	3	64	2	2.02929	3.48745	4.94561	0.0189138	0.0150263	0.118303	0.0994339
chr12	28230793	28230893	5100675	0	+	0.49	(0.476,0.515]	chr12	481914	42	INTRON	INTRON	CCDC91	ENSG00000123106.11	ENST00000540794.5:ENST00000538586.5:ENST00000536154.5:ENST00000535520.5:ENST00000539107.5:ENST00000544649.5:ENST00000545336.5:ENST00000536442.6:ENST00000544780.5:ENST00000543534.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	69	2	3.29939	3.487415	3.67544	0.00211868	5.51624e-4	0.0425644	0.0216014
chr10	17666810	17666910	4399493	0	+	0.33	(0.32,0.35]	chr10	406156	59	INTRON	INTRON	STAM	ENSG00000136738.15	ENST00000377524.8:ENST00000377500.1:ENST00000445846.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	46	2	2.35591	3.4874	4.61889	0.0166646	0.0128129	0.102621	0.0990564
chr1	103189	103289	352408	0	-	0.44	(0.408,0.44]	chr1	40774	106	INTRON	INTRON	ENSG00000238009	ENSG00000238009.6	ENST00000466430.5:ENST00000477740.5	lncRNA	lncRNA	lncRNA	lncRNA	1	31	2	2.2957	3.48732	4.67894	0.0516458	0.0087648	0.176696	0.0788605
chr1	227234295	227234395	650877	0	-	0.44	(0.408,0.44]	chr1	77102	145	INTRON	INTRON	CDC42BPA	ENSG00000143776.20	ENST00000366766.8:ENST00000366769.7:ENST00000334218.9:ENST00000366767.7:ENST00000366764.8:ENST00000478573.6:ENST00000682551.1:ENST00000462553.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	31	2	2.2957	3.48732	4.67894	0.0516458	0.0087648	0.176696	0.0788605
chr17	17254259	17254358	6736159	0	-	0.424242	(0.408,0.44]	chr17	660954	49	INTRON	INTRON	COPS3	ENSG00000141030.13	ENST00000268717.10:ENST00000539941.6:ENST00000578317.5:ENST00000439936.6:ENST00000463097.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	31	2	2.2957	3.48732	4.67894	0.0516458	0.0087648	0.176696	0.0788605
chr18	21554371	21554470	6954641	0	-	0.434343	(0.408,0.44]	chr18	687986	133	INTRON	INTRON	ESCO1	ENSG00000141446.11	ENST00000269214.10:ENST00000383276.1:ENST00000622333.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	31	2	2.2957	3.48732	4.67894	0.0516458	0.0087648	0.176696	0.0788605
chr5	134615799	134615898	2727826	0	-	0.424242	(0.408,0.44]	chr5	256716	10	INTRON	INTRON	SAR1B	ENSG00000152700.14	ENST00000402673.7:ENST00000507419.5:ENST00000439578.5:ENST00000503318.5:ENST00000505758.5:ENST00000502286.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	31	2	2.2957	3.48732	4.67894	0.0516458	0.0087648	0.176696	0.0788605
chr6	20450369	20450469	2827934	0	+	0.41	(0.408,0.44]	chr6	265583	103	INTRON	INTRON	E2F3	ENSG00000112242.16	ENST00000346618.8:ENST00000535432.2	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	2.2957	3.48732	4.67894	0.0516458	0.0087648	0.176696	0.0788605
chr6	24706856	24706951	3070599	0	-	0.410526	(0.408,0.44]	chr6	285346	2	INTRON	INTRON	C6orf62	ENSG00000112308.13	ENST00000378119.9:ENST00000378102.3	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	2.2957	3.48732	4.67894	0.0516458	0.0087648	0.176696	0.0788605
chr15	41280987	41281087	6004369	0	+	0.48	(0.476,0.515]	chr15	571237	17	UTR3	UTR3:EXON_MRNA	CHP1	ENSG00000187446.12	ENST00000334660.10	protein_coding	protein_coding	protein_coding	protein_coding	17	450	2	3.11359	3.487305	3.86102	1.56361e-6	1.89523e-8	8.28276e-4	4.97686e-5
chr8	129433693	129433792	4059608	0	-	0.292929	(0.28,0.32]	chr8	369584	311	INTRON	INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1:ENST00000676273.1:ENST00000667643.1:ENST00000668791.1:ENST00000663716.1:ENST00000663572.1:ENST00000676148.1:ENST00000667962.1:ENST00000674877.1:ENST00000675316.1:ENST00000674656.1:ENST00000446592.7:ENST00000667341.1:ENST00000675186.1:ENST00000652971.1:ENST00000661447.1:ENST00000674863.1:ENST00000675498.1:ENST00000675527.1:ENST00000676108.1:ENST00000657647.1:ENST00000675589.1:ENST00000675913.1:ENST00000675109.1:ENST00000671632.1:ENST00000671311.1:ENST00000676099.1:ENST00000660652.1:ENST00000675522.1:ENST00000675183.1:ENST00000658861.1:ENST00000663991.1:ENST00000675044.1:ENST00000675435.1:ENST00000674639.1:ENST00000676069.1:ENST00000675532.1:ENST00000674762.1:ENST00000523151.6:ENST00000675948.1:ENST00000665364.1:ENST00000657251.1:ENST00000675166.1:ENST00000674883.1:ENST00000675867.1:ENST00000674580.1:ENST00000675393.1:ENST00000520048.1:ENST00000674906.1:ENST00000676030.1:ENST00000670588.1:ENST00000675072.1:ENST00000664936.1:ENST00000652914.1:ENST00000657069.1	lncRNA	lncRNA	lncRNA	lncRNA	2	53	2	2.00989	3.487215	4.96454	0.0427801	0.00344078	0.148082	0.0539802
chr7	100814619	100814718	3587686	0	-	0.272727	[0,0.28]	chr7	334693	2	INTRON	INTRON	EPHB4	ENSG00000196411.10	ENST00000358173.8:ENST00000616502.4:ENST00000360620.7:ENST00000487222.5:ENST00000477446.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	96	2	3.24659	3.4871499999999997	3.72771	0.00570201	5.87492e-4	0.0656459	0.0220073
chr22	37565499	37565599	7509892	0	+	0.31	(0.28,0.32]	chr22	766644	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	CDC42EP1	ENSG00000128283.7	ENST00000249014.5:ENST00000430687.1:ENST00000415670.1:ENST00000434728.1	protein_coding	protein_coding	protein_coding	protein_coding	3	64	2	1.72279	3.4871	5.25141	0.0496859	0.00125199	0.156383	0.0328543
chr1	21757594	21757662	396613	0	-	0.294118	(0.28,0.32]	chr1	47341	3	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	USP48	ENSG00000090686.16	ENST00000400301.5:ENST00000308271.14:ENST00000529637.5:ENST00000421625.6:ENST00000527823.5:ENST00000532737.1:ENST00000489108.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	438	2	3.20965	3.48698	3.76431	8.02043e-5	4.7739e-8	0.00804467	8.9819e-5
chr3	196868473	196868573	1596443	0	+	0.65	(0.57,1]	chr3	165385	4	SS5_PROX	SS5_PROX:INTRON	SENP5	ENSG00000119231.11	ENST00000445299.6:ENST00000323460.10:ENST00000419026.5	protein_coding	protein_coding	protein_coding	protein_coding	2	28	2	1.91937	3.48693	5.05449	0.0468438	1.79828e-4	0.167716	0.0121697
chr1	146387445	146387545	211566	0	+	0.37	(0.35,0.378]	chr1	23260	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ENSG00000287978	ENSG00000287978.1	ENST00000660431.1	lncRNA	lncRNA	lncRNA	lncRNA	1	42	2	3.17244	3.486865	3.80129	0.0504034	0.00487788	0.17488	0.0607461
chr1	23073703	23073803	44318	0	+	0.27	[0,0.28]	chr1	5317	3	SS5_PROX	SS5_PROX:INTRON	KDM1A	ENSG00000004487.18	ENST00000692214.1:ENST00000686934.1:ENST00000689853.1:ENST00000465864.2:ENST00000691256.1:ENST00000688122.1:ENST00000692056.1:ENST00000692853.1:ENST00000689366.1:ENST00000686270.1:ENST00000685102.1:ENST00000690627.1:ENST00000686771.1:ENST00000692209.1:ENST00000686339.1:ENST00000691813.1:ENST00000693156.1:ENST00000688235.1:ENST00000692975.1:ENST00000687202.1:ENST00000691682.1:ENST00000691404.1:ENST00000691694.1:ENST00000688680.1:ENST00000356634.7:ENST00000400181.9:ENST00000689677.1:ENST00000686793.1:ENST00000689971.1:ENST00000688943.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	62	2	1.66929	3.486765	5.30424	0.0537506	0.00584781	0.180803	0.0667594
chr1	219206929	219207028	318711	0	+	0.252525	[0,0.28]	chr1	36461	78	INTRON	INTRON	LYPLAL1	ENSG00000143353.12	ENST00000460522.5:ENST00000366927.3:ENST00000366928.10:ENST00000477938.5:ENST00000463964.5:ENST00000483635.5:ENST00000474379.5:ENST00000469590.5:ENST00000478794.5:ENST00000475724.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	62	2	1.66929	3.486765	5.30424	0.0537506	0.00584781	0.180803	0.0667594
chr2	54996393	54996493	1120863	0	-	0.37	(0.35,0.378]	chr2	120142	83	INTRON	INTRON	RTN4	ENSG00000115310.19	ENST00000394609.6:ENST00000404909.5:ENST00000394611.6:ENST00000317610.11:ENST00000357732.8:ENST00000337526.11:ENST00000357376.7:ENST00000405240.5:ENST00000438462.1	protein_coding	protein_coding	protein_coding	protein_coding	4	62	2	2.04967	3.4866099999999998	4.92355	0.00827328	0.00573514	0.0813266	0.0657377
chr17	30895677	30895773	6591088	0	+	0.385417	(0.378,0.408]	chr17	641038	9	UTR3	UTR3:EXON_MRNA	ATAD5	ENSG00000176208.9	ENST00000321990.5	protein_coding	protein_coding	protein_coding	protein_coding	4	113	2	3.14746	3.486605	3.82575	3.23711e-4	8.84383e-5	0.0165891	0.00791674
chr17	37616616	37616713	6764123	0	-	0.43299	(0.408,0.44]	chr17	665161	12	INTRON	INTRON	DDX52	ENSG00000278053.5	ENST00000617633.5:ENST00000616646.4:ENST00000620209.4:ENST00000614307.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	45	2	2.11447	3.486595	4.85872	0.0285207	0.00221911	0.12666	0.0435144
chr3	49764203	49764302	1694660	0	-	0.434343	(0.408,0.44]	chr3	173818	154	INTRON	INTRON	IP6K1	ENSG00000176095.12	ENST00000321599.9:ENST00000395238.5:ENST00000613416.4:ENST00000468463.5:ENST00000460540.1:ENST00000498149.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	45	2	2.11447	3.486595	4.85872	0.0285207	0.00221911	0.12666	0.0435144
chr5	304716	304816	2312952	0	+	0.42	(0.408,0.44]	chr5	223719	6	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	PDCD6	ENSG00000249915.9	ENST00000614778.4:ENST00000618970.4:ENST00000513582.5:ENST00000264933.9:ENST00000505221.5:ENST00000507528.5:ENST00000505526.1:ENST00000507473.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	45	2	2.11447	3.486595	4.85872	0.0285207	0.00221911	0.12666	0.0435144
chr10	22712835	22712935	4580487	0	-	0.42	(0.408,0.44]	chr10	422046	183	INTRON	INTRON	PIP4K2A	ENSG00000150867.14	ENST00000376573.9:ENST00000545335.5	protein_coding	protein_coding	protein_coding	protein_coding	7	74	2	1.36246	3.4865700000000004	5.61068	0.0386802	3.21002e-4	0.159946	0.0165409
chr1	86999119	86999219	154440	0	+	0.27	[0,0.28]	chr1	16969	237	INTRON	INTRON	HS2ST1	ENSG00000153936.18	ENST00000370550.10:ENST00000370551.8:ENST00000687893.1:ENST00000693745.1:ENST00000689904.1:ENST00000690674.1:ENST00000591456.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	38	2	2.5055	3.4863799999999996	4.46726	0.0427997	0.0359431	0.152322	0.148082
chr15	92885876	92885972	6103536	0	+	0.25	[0,0.28]	chr15	581361	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CHASERR:ENSG00000279765	ENSG00000272888.8:ENSG00000279765.3	ENST00000653163.1:ENST00000557682.6:ENST00000556895.5:ENST00000554894.5:ENST00000557147.1:ENST00000629685.2:ENST00000554133.5:ENST00000555227.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	1	38	2	2.5055	3.4863799999999996	4.46726	0.0427997	0.0359431	0.152322	0.148082
chr17	46091174	46091273	6783845	0	-	0.232323	[0,0.28]	chr17	669203	21	INTRON	INTRON	KANSL1	ENSG00000120071.15	ENST00000574590.6:ENST00000572904.6:ENST00000432791.7:ENST00000575318.6:ENST00000638275.1:ENST00000262419.10:ENST00000648792.1:ENST00000639531.1:ENST00000639150.1:ENST00000639853.1:ENST00000571698.2:ENST00000639375.1:ENST00000577114.2:ENST00000639279.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	38	2	2.5055	3.4863799999999996	4.46726	0.0427997	0.0359431	0.152322	0.148082
chr6	17960210	17960310	3068279	0	-	0.28	[0,0.28]	chr6	285105	84	INTRON	INTRON	KIF13A	ENSG00000137177.20	ENST00000378814.9:ENST00000259711.11:ENST00000378826.6:ENST00000378843.6:ENST00000636847.1:ENST00000507576.1:ENST00000505588.1:ENST00000502704.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	38	2	2.5055	3.4863799999999996	4.46726	0.0427997	0.0359431	0.152322	0.148082
chr6	45261430	45261530	3102821	0	-	0.28	[0,0.28]	chr6	290480	99	INTRON	INTRON	SUPT3H	ENSG00000196284.17	ENST00000475057.5:ENST00000371459.6:ENST00000371460.5:ENST00000459689.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	38	2	2.5055	3.4863799999999996	4.46726	0.0427997	0.0359431	0.152322	0.148082
chr6	136593706	136593805	3233627	0	-	0.252525	[0,0.28]	chr6	300580	7	INTRON	INTRON	MAP3K5	ENSG00000197442.10	ENST00000359015.5	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	2.5055	3.4863799999999996	4.46726	0.0427997	0.0359431	0.152322	0.148082
chr7	135487585	135487685	3648736	0	-	0.27	[0,0.28]	chr7	339187	488	INTRON	INTRON	CNOT4	ENSG00000080802.20	ENST00000541284.6:ENST00000451834.5:ENST00000423368.6:ENST00000361528.8:ENST00000428680.6:ENST00000315544.6:ENST00000491203.5:ENST00000498534.5:ENST00000465721.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	38	2	2.5055	3.4863799999999996	4.46726	0.0427997	0.0359431	0.152322	0.148082
chr7	135626761	135626861	3429042	0	+	0.27	[0,0.28]	chr7	319801	4	SS5_PROX	SS5_PROX:INTRON	NUP205	ENSG00000155561.15	ENST00000285968.11:ENST00000607647.5:ENST00000477620.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	38	2	2.5055	3.4863799999999996	4.46726	0.0427997	0.0359431	0.152322	0.148082
chr9	91921865	91921965	4284984	0	-	0.28	[0,0.28]	chr9	393921	348	INTRON	INTRON	ROR2	ENSG00000169071.15	ENST00000375715.5:ENST00000375708.4:ENST00000495386.5:ENST00000546883.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	38	2	2.5055	3.4863799999999996	4.46726	0.0427997	0.0359431	0.152322	0.148082
chr12	107702134	107702234	5218925	0	+	0.32	(0.28,0.32]	chr12	494023	23	INTRON	INTRON	PWP1	ENSG00000136045.12	ENST00000412830.8:ENST00000541166.1	protein_coding	protein_coding	protein_coding	protein_coding	2	49	2	2.38391	3.48633	4.58875	0.0230574	0.0122525	0.118056	0.0969406
chr2	55035618	55035718	1121261	0	-	0.29	(0.28,0.32]	chr2	120163	70	INTRON	INTRON	RTN4	ENSG00000115310.19	ENST00000404909.5:ENST00000394611.6:ENST00000317610.11:ENST00000357732.8:ENST00000337526.11:ENST00000357376.7:ENST00000405240.5:ENST00000438462.1:ENST00000427710.5	protein_coding	protein_coding	protein_coding	protein_coding	2	49	2	2.38391	3.48633	4.58875	0.0230574	0.0122525	0.118056	0.0969406
chr2	227537493	227537592	1026324	0	+	0.282828	(0.28,0.32]	chr2	109623	1	INTRON	INTRON	AGFG1	ENSG00000173744.18	ENST00000409979.6:ENST00000310078.13:ENST00000409315.5:ENST00000373671.7:ENST00000409171.5:ENST00000458212.1	protein_coding	protein_coding	protein_coding	protein_coding	2	49	2	2.38391	3.48633	4.58875	0.0230574	0.0122525	0.118056	0.0969406
chr11	658435	658535	4889106	0	-	0.49	(0.476,0.515]	chr11	457702	40	INTRON	INTRON	DEAF1	ENSG00000177030.19	ENST00000382409.4:ENST00000527170.5:ENST00000685854.1:ENST00000683307.1:ENST00000528864.6:ENST00000525626.6:ENST00000682936.1:ENST00000690068.1:ENST00000692634.1:ENST00000687329.1:ENST00000686001.1:ENST00000689835.1:ENST00000525904.5:ENST00000530813.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	41	2	2.13304	3.4863299999999997	4.83962	0.024866	0.00480934	0.132101	0.0602209
chr3	129883535	129883633	1818005	0	-	0.479592	(0.476,0.515]	chr3	182656	26	INTRON	INTRON	TMCC1	ENSG00000172765.18	ENST00000393238.8:ENST00000426664.6:ENST00000648771.1:ENST00000505616.5:ENST00000505924.5:ENST00000512902.5:ENST00000508869.5:ENST00000515024.5:ENST00000508729.5:ENST00000509440.5:ENST00000510521.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	41	2	2.13304	3.4863299999999997	4.83962	0.024866	0.00480934	0.132101	0.0602209
chr19	10134775	10134868	7134218	0	-	0.526882	(0.515,0.57]	chr19	719066	6	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	DNMT1	ENSG00000130816.17	ENST00000586667.2:ENST00000586588.5:ENST00000340748.8:ENST00000359526.9:ENST00000592705.5:ENST00000591798.5:ENST00000679103.1:ENST00000677634.1:ENST00000676820.1:ENST00000677250.1:ENST00000677013.1:ENST00000677685.1:ENST00000677616.1:ENST00000676604.1:ENST00000678024.1:ENST00000676868.1:ENST00000677783.1:ENST00000678694.1:ENST00000679100.1:ENST00000589351.6:ENST00000678957.1:ENST00000678107.1:ENST00000678647.1:ENST00000677038.1:ENST00000676610.1:ENST00000678851.1:ENST00000588913.5:ENST00000678804.1:ENST00000679313.1:ENST00000677946.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	120	2	2.48387	3.48632	4.48877	6.04008e-4	2.68161e-6	0.0226059	0.00105178
chr2	174184183	174184283	1270209	0	-	0.41	(0.408,0.44]	chr2	134282	418	INTRON	INTRON	OLA1	ENSG00000138430.16	ENST00000284719.8:ENST00000344357.9:ENST00000428402.6:ENST00000409546.5:ENST00000429575.1	protein_coding	protein_coding	protein_coding	protein_coding	2	41	2	2.14732	3.4863100000000005	4.8253	0.0237354	0.0056738	0.129075	0.0653997
chr7	137953780	137953880	3655258	0	-	0.43	(0.408,0.44]	chr7	339370	200	INTRON	INTRON	CREB3L2	ENSG00000182158.16	ENST00000330387.11:ENST00000456390.5:ENST00000452463.5	protein_coding	protein_coding	protein_coding	protein_coding	2	41	2	2.14732	3.4863100000000005	4.8253	0.0237354	0.0056738	0.129075	0.0653997
chr12	6499322	6499422	5069272	0	+	0.52	(0.515,0.57]	chr12	478656	37	INTRON	INTRON	NCAPD2	ENSG00000010292.13	ENST00000541399.1:ENST00000539714.5:ENST00000382457.8:ENST00000539084.5:ENST00000315579.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	94	2	3.12677	3.4863	3.84583	1.82082e-4	7.69212e-5	0.0122264	0.00735438
chr11	206415	206506	4887931	0	-	0.494505	(0.476,0.515]	chr11	457296	4	SS3_PROX	SS3_PROX:INTRON	BET1L	ENSG00000177951.18	ENST00000410108.5:ENST00000382762.8:ENST00000325147.13:ENST00000529614.6:ENST00000332865.10:ENST00000486280.1:ENST00000479463.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	41	2	2.06491	3.4862599999999997	4.90761	0.0304733	0.00386428	0.143385	0.0542786
chr17	50744813	50744913	6627239	0	+	0.48	(0.476,0.515]	chr17	647233	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	LUC7L3	ENSG00000108848.16	ENST00000393227.6:ENST00000505658.6:ENST00000240304.5:ENST00000508482.5:ENST00000504065.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	41	2	2.06491	3.4862599999999997	4.90761	0.0304733	0.00386428	0.143385	0.0542786
chr7	106102771	106102870	3608111	0	-	0.343434	(0.32,0.35]	chr7	336457	31	INTRON	INTRON	SYPL1	ENSG00000008282.9	ENST00000011473.6:ENST00000455385.7:ENST00000470347.1:ENST00000634737.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	45	2	2.13945	3.48616	4.83287	0.0254517	0.0095071	0.133676	0.0817766
chr3	140957879	140957978	1523112	0	+	0.393939	(0.378,0.408]	chr3	158658	8	INTRON	INTRON	SLC25A36	ENSG00000114120.14	ENST00000446041.6:ENST00000324194.12:ENST00000648615.1:ENST00000393015.8:ENST00000515813.1:ENST00000507429.5:ENST00000502594.5:ENST00000453248.6:ENST00000631654.1:ENST00000513887.5:ENST00000512023.5:ENST00000512506.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	71	2	3.10274	3.486125	3.86951	0.00586642	1.55755e-4	0.0668095	0.0106835
chr7	156892069	156892169	3688007	0	-	0.43	(0.408,0.44]	chr7	342097	2	SS5_PROX	SS5_PROX:INTRON	LMBR1	ENSG00000105983.23	ENST00000353442.10:ENST00000415428.5:ENST00000454132.5:ENST00000434503.5:ENST00000430278.5:ENST00000434278.5:ENST00000444719.5:ENST00000461469.5:ENST00000414218.1:ENST00000434453.1:ENST00000498034.5:ENST00000433968.5:ENST00000485985.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	79	2	1.28292	3.48609	5.68926	0.0429534	2.2853e-4	0.162255	0.0138641
chr4	103167447	103167546	2215287	0	-	0.232323	[0,0.28]	chr4	217118	35	INTRON	INTRON	CENPE	ENSG00000138778.14	ENST00000380026.8:ENST00000265148.9	protein_coding	protein_coding	protein_coding	protein_coding	3	62	2	1.71402	3.486085	5.25815	0.047753	0.0066548	0.170327	0.0703807
chr7	107897557	107897656	3379678	0	+	0.353535	(0.35,0.378]	chr7	316570	39	INTRON	INTRON	DLD	ENSG00000091140.15	ENST00000417551.5:ENST00000415325.5:ENST00000440410.5:ENST00000437604.6:ENST00000205402.10:ENST00000451081.5:ENST00000450038.5:ENST00000453354.5:ENST00000460577.5:ENST00000494441.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	52	2	1.92704	3.48608	5.04512	0.0228255	0.00393262	0.125469	0.0548259
chr7	135475894	135475994	3648619	0	-	0.28	[0,0.28]	chr7	339187	371	INTRON	INTRON	CNOT4	ENSG00000080802.20	ENST00000541284.6:ENST00000451834.5:ENST00000423368.6:ENST00000361528.8:ENST00000428680.6:ENST00000315544.6:ENST00000491203.5:ENST00000498534.5:ENST00000465721.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	62	2	1.62313	3.486015	5.3489	0.0605286	0.00514751	0.191883	0.062965
chrX	3825231	3825331	7746830	0	-	0.38	(0.378,0.408]	chrX	793074	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	ENSG00000285756	ENSG00000285756.2	ENST00000648217.1:ENST00000425492.5:ENST00000662024.1:ENST00000490920.2:ENST00000475317.5:ENST00000483854.6:ENST00000653447.1:ENST00000669937.1:ENST00000671495.1:ENST00000486571.1	lncRNA	lncRNA	lncRNA	lncRNA	1	40	2	3.14892	3.4859299999999998	3.82294	0.044228	0.00499984	0.162255	0.0617433
chr1	26476144	26476243	50642	0	+	0.454545	(0.44,0.476]	chr1	6389	11	UTR3	UTR3:EXON_MRNA	HMGN2	ENSG00000198830.11	ENST00000361427.6	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	2.5364	3.485825	4.43525	0.0309324	0.00897296	0.13151	0.0849778
chr11	130877622	130877722	5053981	0	-	0.47	(0.44,0.476]	chr11	476973	115	UTR3	UTR3:EXON_MRNA	SNX19	ENSG00000120451.11	ENST00000265909.9	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	2.5364	3.485825	4.43525	0.0309324	0.00897296	0.13151	0.0849778
chr3	37045968	37046066	1395692	0	+	0.469388	(0.44,0.476]	chr3	146271	33	INTRON	INTRON	MLH1	ENSG00000076242.16	ENST00000536378.5:ENST00000673899.1:ENST00000674111.1:ENST00000673972.1:ENST00000231790.8:ENST00000673715.1:ENST00000432299.6:ENST00000673897.1:ENST00000673947.1:ENST00000456676.6:ENST00000673673.1:ENST00000674019.1:ENST00000458205.6:ENST00000413212.2:ENST00000447829.6:ENST00000673990.1:ENST00000455445.6:ENST00000435176.5:ENST00000539477.6:ENST00000441265.6:ENST00000673889.1:ENST00000616768.5:ENST00000450420.5:ENST00000413740.1:ENST00000674125.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	33	2	2.5364	3.485825	4.43525	0.0309324	0.00897296	0.13151	0.0849778
chr7	23395871	23395970	3502915	0	-	0.444444	(0.44,0.476]	chr7	326881	13	INTRON	INTRON	IGF2BP3	ENSG00000136231.14	ENST00000258729.8:ENST00000421467.6:ENST00000468263.5:ENST00000479504.5:ENST00000466809.6:ENST00000491719.5:ENST00000465058.5:ENST00000469723.5:ENST00000474105.5:ENST00000476938.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	33	2	2.5364	3.485825	4.43525	0.0309324	0.00897296	0.13151	0.0849778
chr1	9270938	9271038	17127	0	+	0.52	(0.515,0.57]	chr1	1565	62	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	H6PD	ENSG00000049239.13	ENST00000377403.7:ENST00000495451.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	28	2	2.65834	3.4858	4.31326	0.0187418	0.0141817	0.117523	0.0959618
chr1	108946056	108946154	518994	0	-	0.540816	(0.515,0.57]	chr1	60902	14	INTRON	INTRON	CLCC1	ENSG00000121940.17	ENST00000690509.1:ENST00000687328.1:ENST00000685014.1:ENST00000685540.1:ENST00000686576.1:ENST00000688070.1:ENST00000691513.1:ENST00000686821.1:ENST00000692511.1:ENST00000689479.1:ENST00000687646.1:ENST00000687998.1:ENST00000687226.1:ENST00000693336.1:ENST00000689991.1:ENST00000687591.1:ENST00000691777.1:ENST00000690756.1:ENST00000688778.1:ENST00000685104.1:ENST00000689103.1:ENST00000687734.1:ENST00000686434.1:ENST00000685497.1:ENST00000691342.1:ENST00000686776.1:ENST00000692342.1:ENST00000689351.1:ENST00000692584.1:ENST00000692775.1:ENST00000687134.1:ENST00000690707.1:ENST00000675018.1:ENST00000690781.1:ENST00000691556.1:ENST00000689189.1:ENST00000687099.1:ENST00000685791.1:ENST00000687865.1:ENST00000687449.1:ENST00000688285.1:ENST00000686817.1:ENST00000369968.7:ENST00000674992.1:ENST00000675001.1:ENST00000369969.7:ENST00000356970.6:ENST00000369976.6:ENST00000688610.1:ENST00000675128.1:ENST00000693089.1:ENST00000675571.1:ENST00000675650.1:ENST00000369970.8:ENST00000674561.2:ENST00000675451.1:ENST00000675654.1:ENST00000675790.1:ENST00000675584.1:ENST00000692795.1:ENST00000691731.1:ENST00000689359.1:ENST00000676392.2:ENST00000676391.2:ENST00000676454.1:ENST00000674849.1:ENST00000675956.1:ENST00000302500.5:ENST00000675508.1:ENST00000688168.1:ENST00000693673.1:ENST00000692404.1:ENST00000686078.1:ENST00000690874.1:ENST00000692732.1:ENST00000685628.1:ENST00000676306.1:ENST00000348264.6:ENST00000675247.2:ENST00000676059.2:ENST00000674527.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	28	2	2.65834	3.4858	4.31326	0.0187418	0.0141817	0.117523	0.0959618
chr1	156548948	156549048	567288	0	-	0.52	(0.515,0.57]	chr1	68159	2	SS3_PROX	SS3_PROX:INTRON	IQGAP3	ENSG00000183856.11	ENST00000491900.1:ENST00000361170.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	28	2	2.65834	3.4858	4.31326	0.0187418	0.0141817	0.117523	0.0959618
chr17	37150374	37150474	6760415	0	-	0.52	(0.515,0.57]	chr17	664683	4	SS3_PROX	SS3_PROX:INTRON	ACACA	ENSG00000278540.5	ENST00000616317.5:ENST00000614428.4:ENST00000612895.4:ENST00000619546.4:ENST00000617649.4:ENST00000614482.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	28	2	2.65834	3.4858	4.31326	0.0187418	0.0141817	0.117523	0.0959618
chr2	63914881	63914976	1138951	0	-	0.568421	(0.515,0.57]	chr2	121953	2	INTRON	INTRON	VPS54	ENSG00000143952.20	ENST00000409558.8:ENST00000272322.9:ENST00000354504.7:ENST00000416400.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	28	2	2.65834	3.4858	4.31326	0.0187418	0.0141817	0.117523	0.0959618
chr3	52287532	52287632	1699073	0	-	0.57	(0.515,0.57]	chr3	174733	3	SS5_PROX	SS5_PROX:INTRON	WDR82	ENSG00000164091.12	ENST00000463624.1	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	2.65834	3.4858	4.31326	0.0187418	0.0141817	0.117523	0.0959618
chr6	132788081	132788177	3222718	0	-	0.541667	(0.515,0.57]	chr6	299630	1	INTRON	INTRON	SLC18B1	ENSG00000146409.12	ENST00000275227.9:ENST00000647932.1:ENST00000650278.1:ENST00000650136.1:ENST00000650298.1:ENST00000367918.1:ENST00000460518.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	28	2	2.65834	3.4858	4.31326	0.0187418	0.0141817	0.117523	0.0959618
chr10	63343283	63343383	4634163	0	-	0.41	(0.408,0.44]	chr10	426226	742	INTRON	INTRON	JMJD1C	ENSG00000171988.20	ENST00000399262.7:ENST00000633035.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	33	2	2.18807	3.4857750000000003	4.78348	0.0708044	0.00290352	0.184528	0.0494641
chr13	24448451	24448547	5562582	0	-	0.416667	(0.408,0.44]	chr13	531547	9	INTRON	INTRON	PARP4	ENSG00000102699.6	ENST00000381989.4	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	2.18807	3.4857750000000003	4.78348	0.0708044	0.00290352	0.184528	0.0494641
chr14	50907955	50908048	5892856	0	-	0.430108	(0.408,0.44]	chr14	559542	3	SS5_PROX	SS5_PROX:INTRON	PYGL	ENSG00000100504.17	ENST00000532462.5:ENST00000216392.8:ENST00000544180.6	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	2.18807	3.4857750000000003	4.78348	0.0708044	0.00290352	0.184528	0.0494641
chr14	52467646	52467746	5893628	0	-	0.41	(0.408,0.44]	chr14	559676	43	INTRON	INTRON	TXNDC16	ENSG00000087301.9	ENST00000281741.9:ENST00000554399.1:ENST00000555312.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	33	2	2.18807	3.4857750000000003	4.78348	0.0708044	0.00290352	0.184528	0.0494641
chr17	36596493	36596591	6602374	0	+	0.428571	(0.408,0.44]	chr17	642621	3	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	DHRS11	ENSG00000278535.5	ENST00000618403.5:ENST00000611337.4:ENST00000612538.1:ENST00000612205.1:ENST00000615432.4:ENST00000610443.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	33	2	2.18807	3.4857750000000003	4.78348	0.0708044	0.00290352	0.184528	0.0494641
chr2	32020339	32020439	1091218	0	-	0.41	(0.408,0.44]	chr2	116926	79	INTRON	INTRON	DPY30	ENSG00000162961.14	ENST00000446765.5:ENST00000452582.5:ENST00000414013.5	protein_coding	processed_transcript	protein_coding	processed_transcript	1	33	2	2.18807	3.4857750000000003	4.78348	0.0708044	0.00290352	0.184528	0.0494641
chr3	44498176	44498275	1676764	0	-	0.434343	(0.408,0.44]	chr3	171153	27	INTRON	INTRON	ZNF852	ENSG00000178917.17	ENST00000650400.1	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	2.18807	3.4857750000000003	4.78348	0.0708044	0.00290352	0.184528	0.0494641
chr1	39371779	39371878	77635	0	+	0.444444	(0.44,0.476]	chr1	9971	12	INTRON	INTRON	MACF1	ENSG00000127603.32	ENST00000361689.7:ENST00000567887.5:ENST00000372915.8:ENST00000564288.6:ENST00000671089.2:ENST00000372925.6:ENST00000476350.1:ENST00000289893.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	41	2	2.21079	3.485735	4.76068	0.0194581	0.00653414	0.119831	0.0699952
chr7	129842824	129842923	3636858	0	-	0.474747	(0.44,0.476]	chr7	338182	31	INTRON	INTRON	UBE2H	ENSG00000186591.13	ENST00000355621.8:ENST00000649897.1:ENST00000473814.6:ENST00000496698.5:ENST00000472396.5:ENST00000480245.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	41	2	2.21079	3.485735	4.76068	0.0194581	0.00653414	0.119831	0.0699952
chr7	105536127	105536191	3375724	0	+	0.484375	(0.476,0.515]	chr7	316047	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RINT1	ENSG00000135249.8	ENST00000467392.5:ENST00000482041.5:ENST00000493041.5:ENST00000257700.7:ENST00000497979.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	91	2	3.11647	3.48566	3.85485	6.41912e-4	1.63076e-4	0.0231685	0.0109774
chr9	130585185	130585285	4213148	0	+	0.53	(0.515,0.57]	chr9	386268	32	INTRON	INTRON	FUBP3	ENSG00000107164.16	ENST00000319725.10:ENST00000650723.1:ENST00000465949.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	45	2	2.06206	3.4855899999999997	4.90912	0.0135396	0.0021669	0.101363	0.0417866
chr10	92341799	92341898	4490358	0	+	0.525253	(0.515,0.57]	chr10	413511	6	INTRON	INTRON	MARCHF5	ENSG00000198060.10	ENST00000358935.3:ENST00000467521.6:ENST00000462465.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	28	2	2.46104	3.48552	4.51	0.032841	0.00809449	0.145164	0.0766625
chr13	50030933	50031027	5594073	0	-	0.521277	(0.515,0.57]	chr13	534683	5	EXON_LNCRNA	EXON_LNCRNA:INTRON	DLEU2	ENSG00000231607.14	ENST00000621282.4:ENST00000688690.1:ENST00000668305.1:ENST00000425586.5:ENST00000686946.1	lncRNA	lncRNA	lncRNA	lncRNA	1	28	2	2.46104	3.48552	4.51	0.032841	0.00809449	0.145164	0.0766625
chr19	7939839	7939934	7130289	0	-	0.526316	(0.515,0.57]	chr19	718340	13	INTRON	INTRON	TIMM44	ENSG00000104980.8	ENST00000270538.8:ENST00000595831.5:ENST00000595876.5:ENST00000597926.1:ENST00000600748.5:ENST00000600000.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	28	2	2.46104	3.48552	4.51	0.032841	0.00809449	0.145164	0.0766625
chr21	21197154	21197254	7380981	0	+	0.57	(0.515,0.57]	chr21	752602	1982	INTRON	INTRON	NCAM2	ENSG00000154654.15	ENST00000400546.6	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	2.46104	3.48552	4.51	0.032841	0.00809449	0.145164	0.0766625
chr5	292003	292103	2312824	0	+	0.54	(0.515,0.57]	chr5	223715	152	INTRON	INTRON	PDCD6	ENSG00000249915.9	ENST00000614778.4:ENST00000618970.4:ENST00000513582.5:ENST00000264933.9:ENST00000505221.5:ENST00000507528.5:ENST00000505526.1:ENST00000507473.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	28	2	2.46104	3.48552	4.51	0.032841	0.00809449	0.145164	0.0766625
chr5	69241549	69241649	2380518	0	+	0.54	(0.515,0.57]	chr5	229271	57	INTRON	INTRON	CDK7	ENSG00000134058.12	ENST00000629350.2:ENST00000626796.2:ENST00000506563.5:ENST00000512687.5:ENST00000515391.5:ENST00000256443.8:ENST00000515180.5:ENST00000506789.5:ENST00000510106.5:ENST00000514676.5:ENST00000504147.5:ENST00000508726.5:ENST00000502604.5:ENST00000513629.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	28	2	2.46104	3.48552	4.51	0.032841	0.00809449	0.145164	0.0766625
chr7	45025616	45025716	3316165	0	+	0.52	(0.515,0.57]	chr7	308173	249	INTRON	INTRON	CCM2	ENSG00000136280.17	ENST00000461377.5:ENST00000544363.5:ENST00000541586.5:ENST00000478582.5:ENST00000258781.11:ENST00000488727.5:ENST00000648329.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	28	2	2.46104	3.48552	4.51	0.032841	0.00809449	0.145164	0.0766625
chr9	130702133	130702221	4213798	0	+	0.556818	(0.515,0.57]	chr9	386408	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	EXOSC2	ENSG00000130713.17	ENST00000491115.7:ENST00000686102.1:ENST00000691284.1:ENST00000685137.1:ENST00000495699.3:ENST00000688967.1:ENST00000691104.1:ENST00000691926.1:ENST00000693435.1:ENST00000688258.1:ENST00000372358.10:ENST00000546165.6:ENST00000372352.7:ENST00000687420.1:ENST00000693011.1:ENST00000687051.1:ENST00000691425.1:ENST00000693610.1:ENST00000692794.1:ENST00000689890.1:ENST00000372351.7:ENST00000372350.7:ENST00000685277.1:ENST00000688364.1:ENST00000689662.1:ENST00000430138.7:ENST00000467138.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	28	2	2.46104	3.48552	4.51	0.032841	0.00809449	0.145164	0.0766625
chr15	63615367	63615467	6198612	0	-	0.47	(0.44,0.476]	chr15	591001	2	SS5_PROX	SS5_PROX:INTRON	HERC1	ENSG00000103657.14	ENST00000443617.7	protein_coding	protein_coding	protein_coding	protein_coding	2	41	2	2.00609	3.4855	4.96491	0.0360127	0.0034249	0.152355	0.0517761
chr17	62482605	62482705	6652916	0	+	0.47	(0.44,0.476]	chr17	649301	10	INTRON	INTRON	TLK2	ENSG00000146872.19	ENST00000582809.5:ENST00000684213.1:ENST00000583843.5:ENST00000579450.5:ENST00000577616.1:ENST00000582195.6:ENST00000682085.1:ENST00000580705.5:ENST00000346027.10:ENST00000326270.13:ENST00000682203.1:ENST00000343388.11:ENST00000683536.1:ENST00000684440.1:ENST00000684772.1:ENST00000682274.1:ENST00000682827.1:ENST00000583690.6:ENST00000682075.1:ENST00000683104.1:ENST00000684012.1:ENST00000581041.5:ENST00000684553.1:ENST00000683737.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	41	2	2.00609	3.4855	4.96491	0.0360127	0.0034249	0.152355	0.0517761
chr19	15375062	15375135	7147669	0	-	0.60274	(0.57,1]	chr19	722046	2	SS3_PROX	SS3_PROX:INTRON	AKAP8	ENSG00000105127.10	ENST00000269701.7:ENST00000680461.1:ENST00000681812.1:ENST00000680336.1:ENST00000680245.1:ENST00000681018.1:ENST00000598597.7:ENST00000599883.2:ENST00000537303.5:ENST00000595416.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	27	2	2.47993	3.4855	4.49107	0.007207	0.00220544	0.0756278	0.0417893
chr5	141628187	141628279	2740274	0	-	0.597826	(0.57,1]	chr5	258202	1	EXON_MRNA	EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HDAC3	ENSG00000171720.10	ENST00000469550.6:ENST00000305264.8:ENST00000459727.5:ENST00000467533.5:ENST00000492407.1:ENST00000523088.5:ENST00000519474.5:ENST00000476739.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	27	2	2.47993	3.4855	4.49107	0.007207	0.00220544	0.0756278	0.0417893
chr16	87859906	87860006	6539001	0	-	0.37	(0.35,0.378]	chr16	633643	77	INTRON	INTRON	SLC7A5	ENSG00000103257.9	ENST00000261622.5:ENST00000565644.5	protein_coding	protein_coding	protein_coding	protein_coding	3	98	2	3.20997	3.485465	3.76096	4.8203e-4	3.32797e-4	0.0203411	0.0162254
chr1	193137417	193137500	284766	0	+	0.325301	(0.32,0.35]	chr1	32770	5	INTRON	INTRON	CDC73	ENSG00000134371.14	ENST00000649895.1:ENST00000643006.1:ENST00000367435.5:ENST00000650197.1:ENST00000643784.1:ENST00000648071.1:ENST00000635846.1:ENST00000649606.1:ENST00000647662.1:ENST00000482484.1:ENST00000649706.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	35	2	2.90786	3.485425	4.06299	0.0559439	0.00993008	0.165463	0.0877296
chr3	12636802	12636902	1617158	0	-	0.33	(0.32,0.35]	chr3	166990	72	INTRON	INTRON	RAF1	ENSG00000132155.14	ENST00000688543.1:ENST00000685348.1:ENST00000251849.9:ENST00000442415.7:ENST00000688444.1:ENST00000692093.1:ENST00000691724.1:ENST00000423275.6:ENST00000687326.1:ENST00000688803.1:ENST00000689876.1:ENST00000686455.1:ENST00000684903.1:ENST00000693312.1:ENST00000690460.1:ENST00000692773.1:ENST00000688625.1:ENST00000693664.1:ENST00000686762.1:ENST00000692311.1:ENST00000692558.1:ENST00000691779.1:ENST00000685738.1:ENST00000690397.1:ENST00000687923.1:ENST00000688269.1:ENST00000693705.1:ENST00000689097.1:ENST00000691899.1:ENST00000689914.1:ENST00000690625.1:ENST00000689389.1:ENST00000687257.1:ENST00000686409.1:ENST00000685653.1:ENST00000689540.1:ENST00000691396.1:ENST00000685437.1:ENST00000689418.1:ENST00000687940.1:ENST00000689481.1:ENST00000491290.2:ENST00000686479.1:ENST00000689033.1:ENST00000692777.1:ENST00000689226.1:ENST00000691718.1:ENST00000692959.1:ENST00000685740.1:ENST00000688753.1:ENST00000688779.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	35	2	2.90786	3.485425	4.06299	0.0559439	0.00993008	0.165463	0.0877296
chr7	73474273	73474372	3554613	0	-	0.323232	(0.32,0.35]	chr7	330777	34	INTRON	INTRON	BAZ1B	ENSG00000009954.11	ENST00000339594.9:ENST00000404251.1	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	2.90786	3.485425	4.06299	0.0559439	0.00993008	0.165463	0.0877296
chr3	47643463	47643562	1683664	0	-	0.30303	(0.28,0.32]	chr3	171996	43	INTRON	INTRON	SMARCC1	ENSG00000173473.11	ENST00000254480.10:ENST00000425518.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	85	2	3.16101	3.485415	3.80982	0.0061861	3.09593e-4	0.0677395	0.0157609
chr2	113903787	113903886	854381	0	+	0.343434	(0.32,0.35]	chr2	95895	127	INTRON	INTRON	ACTR3	ENSG00000115091.12	ENST00000443297.5:ENST00000263238.7:ENST00000415792.5:ENST00000446821.5:ENST00000535589.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	87	2	1.23259	3.48541	5.73823	0.0530143	4.5635e-4	0.179488	0.0196892
chr10	59820545	59820645	4623018	0	-	0.42	(0.408,0.44]	chr10	425670	54	INTRON	INTRON	CCDC6	ENSG00000108091.11	ENST00000263102.7	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	2.43988	3.48538	4.53088	0.0398236	0.00669275	0.143072	0.0738715
chr6	108678828	108678927	2935328	0	+	0.424242	(0.408,0.44]	chr6	276336	136	INTRON	INTRON	FOXO3	ENSG00000118689.15	ENST00000343882.10:ENST00000406360.2:ENST00000540898.1	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	2.43988	3.48538	4.53088	0.0398236	0.00669275	0.143072	0.0738715
chr7	5364218	5364317	3471474	0	-	0.434343	(0.408,0.44]	chr7	324623	10	INTRON	INTRON	TNRC18	ENSG00000182095.15	ENST00000399537.8:ENST00000430969.6	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	2.43988	3.48538	4.53088	0.0398236	0.00669275	0.143072	0.0738715
chr7	75446517	75446617	3558532	0	-	0.42	(0.408,0.44]	chr7	331545	39	INTRON	INTRON	POM121C	ENSG00000272391.6	ENST00000615331.5:ENST00000398379.2	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	2.43988	3.48538	4.53088	0.0398236	0.00669275	0.143072	0.0738715
chr15	78543507	78543598	6068501	0	+	0.32967	(0.32,0.35]	chr15	578092	5	INTRON	INTRON	PSMA4	ENSG00000041357.16	ENST00000560217.5:ENST00000559082.5:ENST00000413382.6:ENST00000559948.5:ENST00000559146.5:ENST00000044462.12:ENST00000559934.5:ENST00000558639.5:ENST00000560099.5:ENST00000557929.5:ENST00000558281.5:ENST00000559365.5:ENST00000558341.5:ENST00000559437.5:ENST00000560737.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	62	2	1.63843	3.4853050000000003	5.33218	0.0360919	0.00204346	0.152563	0.04086
chr8	89723500	89723589	3984938	0	-	0.382022	(0.378,0.408]	chr8	364991	1	INTRON	INTRON	RIPK2-DT	ENSG00000251136.10	ENST00000688654.1:ENST00000690564.1:ENST00000661105.1:ENST00000685145.1:ENST00000519655.6:ENST00000656898.2:ENST00000685787.1:ENST00000693018.1:ENST00000691313.1:ENST00000691446.1:ENST00000524190.2:ENST00000691897.1:ENST00000685988.1:ENST00000691595.1:ENST00000688855.1:ENST00000504145.6:ENST00000685619.1:ENST00000653574.1:ENST00000687824.1:ENST00000521996.2:ENST00000669938.1:ENST00000692782.1	lncRNA	lncRNA	lncRNA	lncRNA	3	51	2	1.59317	3.48528	5.37739	0.0603812	0.0010014	0.19151	0.0288906
chr21	5127597	5127697	7424489	0	-	0.49	(0.476,0.515]	chr21	757293	3	SS5_PROX	SS5_PROX:INTRON	ENSG00000280071	ENSG00000280071.4	ENST00000624810.3:ENST00000625036.3:ENST00000620528.5:ENST00000624120.3:ENST00000624648.3:ENST00000623810.2:ENST00000624714.3:ENST00000623390.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	36	2	2.99852	3.485265	3.97201	0.030904	0.0077575	0.143385	0.0757402
chr19	46604214	46604312	7081833	0	+	0.602041	(0.57,1]	chr19	708599	12	INTRON	INTRON	CALM3	ENSG00000160014.17	ENST00000391918.6:ENST00000597743.5:ENST00000477244.5:ENST00000291295.14:ENST00000598871.5:ENST00000595072.2:ENST00000602169.2:ENST00000594523.5:ENST00000597868.5:ENST00000599839.5:ENST00000596362.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	27	2	2.17026	3.485185	4.80011	0.0220522	6.07135e-4	0.123836	0.0226059
chr2	120093974	120094074	859105	0	+	0.6	(0.57,1]	chr2	96408	3	INTRON	INTRON	EPB41L5	ENSG00000115109.14	ENST00000263713.10:ENST00000443902.6:ENST00000331393.8:ENST00000443124.5:ENST00000452780.1:ENST00000489017.5:ENST00000461128.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	27	2	2.17026	3.485185	4.80011	0.0220522	6.07135e-4	0.123836	0.0226059
chr1	84499204	84499301	495949	0	-	0.309278	(0.28,0.32]	chr1	58754	10	UTR3	UTR3:EXON_MRNA:INTRON	GNG5	ENSG00000174021.12	ENST00000689285.1:ENST00000370645.9:ENST00000487806.5:ENST00000370641.3:ENST00000686161.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	35	2	2.46018	3.4849949999999996	4.50981	0.0375904	0.0275554	0.156054	0.123904
chr1	219198042	219198142	318621	0	+	0.31	(0.28,0.32]	chr1	36457	44	INTRON	INTRON	LYPLAL1	ENSG00000143353.12	ENST00000460522.5:ENST00000366927.3:ENST00000366928.10:ENST00000477938.5:ENST00000463964.5:ENST00000483635.5:ENST00000474379.5:ENST00000469590.5:ENST00000478794.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	35	2	2.46018	3.4849949999999996	4.50981	0.0375904	0.0275554	0.156054	0.123904
chr15	80119629	80119728	6071642	0	+	0.30303	(0.28,0.32]	chr15	578347	42	INTRON	INTRON	ZFAND6	ENSG00000086666.19	ENST00000613266.4:ENST00000561060.5:ENST00000559157.5:ENST00000261749.11:ENST00000561012.5:ENST00000564367.5:ENST00000558494.5:ENST00000618205.4:ENST00000560470.5:ENST00000560228.5:ENST00000559835.5:ENST00000559775.5:ENST00000558688.5:ENST00000560976.5:ENST00000560392.5:ENST00000558390.5:ENST00000558272.5:ENST00000557793.1:ENST00000616533.4:ENST00000558087.5:ENST00000558997.5:ENST00000558724.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	35	2	2.46018	3.4849949999999996	4.50981	0.0375904	0.0275554	0.156054	0.123904
chr17	42010950	42011050	6770814	0	-	0.32	(0.28,0.32]	chr17	666685	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	DNAJC7	ENSG00000168259.17	ENST00000316603.12:ENST00000457167.9:ENST00000586335.2:ENST00000674306.1:ENST00000426588.7:ENST00000674504.1:ENST00000674472.1:ENST00000674233.1:ENST00000674166.1:ENST00000674179.1:ENST00000674481.1:ENST00000674249.1:ENST00000585866.6:ENST00000589576.6:ENST00000674214.1:ENST00000588814.5:ENST00000590774.6:ENST00000674303.1:ENST00000674453.1:ENST00000674252.1:ENST00000674287.1:ENST00000674497.1:ENST00000674411.1:ENST00000585693.2:ENST00000674337.1:ENST00000590847.2:ENST00000674485.1:ENST00000674175.1:ENST00000589810.5:ENST00000588641.6:ENST00000590348.6:ENST00000590886.7:ENST00000589586.6:ENST00000589773.5:ENST00000674425.1:ENST00000591787.1:ENST00000589547.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	35	2	2.46018	3.4849949999999996	4.50981	0.0375904	0.0275554	0.156054	0.123904
chr19	21742277	21742377	7159045	0	-	0.29	(0.28,0.32]	chr19	723706	139	INTRON	INTRON	ZNF100	ENSG00000197020.12	ENST00000358296.11:ENST00000305570.10:ENST00000594401.1	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	2.46018	3.4849949999999996	4.50981	0.0375904	0.0275554	0.156054	0.123904
chr2	148649846	148649946	891803	0	+	0.32	(0.28,0.32]	chr2	98781	39	INTRON	INTRON	EPC2	ENSG00000135999.12	ENST00000457184.5:ENST00000258484.11:ENST00000409654.5:ENST00000397424.2	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	2.46018	3.4849949999999996	4.50981	0.0375904	0.0275554	0.156054	0.123904
chr4	15669502	15669602	2115011	0	-	0.29	(0.28,0.32]	chr4	208898	92	INTRON	INTRON	FBXL5	ENSG00000118564.15	ENST00000510802.5:ENST00000507899.1:ENST00000515679.1:ENST00000514541.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	35	2	2.46018	3.4849949999999996	4.50981	0.0375904	0.0275554	0.156054	0.123904
chr4	169599197	169599297	2297029	0	-	0.3	(0.28,0.32]	chr4	222282	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	NEK1	ENSG00000137601.18	ENST00000687054.1:ENST00000507142.6:ENST00000686697.1:ENST00000688934.1:ENST00000685111.1:ENST00000687528.1:ENST00000687643.1:ENST00000439128.6:ENST00000511633.5:ENST00000510533.5:ENST00000512193.5:ENST00000693604.1:ENST00000692450.1:ENST00000687219.1:ENST00000693085.1:ENST00000690631.1:ENST00000688487.1:ENST00000688653.1:ENST00000692868.1:ENST00000692218.1:ENST00000505119.2:ENST00000510108.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	35	2	2.46018	3.4849949999999996	4.50981	0.0375904	0.0275554	0.156054	0.123904
chr6	42667628	42667726	2866140	0	+	0.285714	(0.28,0.32]	chr6	271209	10	INTRON	INTRON	UBR2	ENSG00000024048.11	ENST00000372899.6:ENST00000372901.2	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	2.46018	3.4849949999999996	4.50981	0.0375904	0.0275554	0.156054	0.123904
chr7	149479550	149479649	3671651	0	-	0.292929	(0.28,0.32]	chr7	340777	14	INTRON	INTRON	ZNF746	ENSG00000181220.18	ENST00000644635.1:ENST00000340622.8:ENST00000458143.7:ENST00000685153.1	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	2.46018	3.4849949999999996	4.50981	0.0375904	0.0275554	0.156054	0.123904
chr8	38273858	38273957	3936305	0	-	0.313131	(0.28,0.32]	chr8	360690	43	UTR3	UTR3:EXON_MRNA	NSD3	ENSG00000147548.17	ENST00000317025.13	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	2.46018	3.4849949999999996	4.50981	0.0375904	0.0275554	0.156054	0.123904
chr8	105479335	105479434	3838855	0	+	0.282828	(0.28,0.32]	chr8	354063	277	INTRON	INTRON	ZFPM2	ENSG00000169946.14	ENST00000407775.7:ENST00000520492.5:ENST00000520027.5:ENST00000524235.5:ENST00000511341.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	35	2	2.46018	3.4849949999999996	4.50981	0.0375904	0.0275554	0.156054	0.123904
chrX	109707678	109707778	7861444	0	-	0.3	(0.28,0.32]	chrX	801455	111	INTRON	INTRON	ACSL4	ENSG00000068366.21	ENST00000469796.7:ENST00000672401.1:ENST00000348502.10:ENST00000340800.7:ENST00000684030.1:ENST00000682031.1:ENST00000671846.1:ENST00000672282.1:ENST00000502391.6:ENST00000684414.1:ENST00000673016.1:ENST00000508092.5:ENST00000504383.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	35	2	2.46018	3.4849949999999996	4.50981	0.0375904	0.0275554	0.156054	0.123904
chr10	32331318	32331418	4591486	0	-	0.32	(0.28,0.32]	chr10	423379	250	INTRON	INTRON	EPC1	ENSG00000120616.16	ENST00000375110.6:ENST00000319778.11:ENST00000667706.1:ENST00000263062.8:ENST00000479380.2:ENST00000495790.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	35	2	2.38101	3.48488	4.58875	0.0456017	0.0230574	0.164236	0.118056
chr15	63671995	63672095	6199237	0	-	0.3	(0.28,0.32]	chr15	591223	1	SS5_PROX	SS5_PROX:INTRON	HERC1	ENSG00000103657.14	ENST00000443617.7	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	2.38101	3.48488	4.58875	0.0456017	0.0230574	0.164236	0.118056
chr2	232751166	232751265	1037789	0	+	0.30303	(0.28,0.32]	chr2	110668	17	INTRON	INTRON	GIGYF2	ENSG00000204120.16	ENST00000629305.2:ENST00000428883.5:ENST00000409480.5:ENST00000456491.5:ENST00000373563.9:ENST00000409547.5:ENST00000430720.5:ENST00000425040.5:ENST00000421433.5:ENST00000423659.5:ENST00000409196.7:ENST00000409451.7:ENST00000463554.5:ENST00000440945.5:ENST00000429187.5:ENST00000424038.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	35	2	2.38101	3.48488	4.58875	0.0456017	0.0230574	0.164236	0.118056
chr5	73009441	73009541	2388701	0	+	0.31	(0.28,0.32]	chr5	230540	25	INTRON	INTRON	FCHO2	ENSG00000157107.14	ENST00000430046.7:ENST00000507345.6:ENST00000512348.5:ENST00000287761.7	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	2.38101	3.48488	4.58875	0.0456017	0.0230574	0.164236	0.118056
chr9	5721846	5721945	4098236	0	+	0.313131	(0.28,0.32]	chr9	373399	7	INTRON	INTRON	RIC1	ENSG00000107036.12	ENST00000251879.10:ENST00000414202.7:ENST00000418622.7:ENST00000545641.5:ENST00000276898.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	35	2	2.38101	3.48488	4.58875	0.0456017	0.0230574	0.164236	0.118056
chr9	92643507	92643606	4287977	0	-	0.292929	(0.28,0.32]	chr9	394426	3	INTRON	INTRON	IPPK	ENSG00000127080.10	ENST00000287996.8	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	2.38101	3.48488	4.58875	0.0456017	0.0230574	0.164236	0.118056
chr7	75476083	75476182	3558830	0	-	0.373737	(0.35,0.378]	chr7	331555	5	INTRON	INTRON	POM121C:ENSG00000242073	ENSG00000272391.6:ENSG00000242073.2	ENST00000615331.5:ENST00000398379.2:ENST00000415277.2	protein_coding	protein_coding	protein_coding:transcribed_unprocessed_pseudogene	protein_coding:transcribed_unprocessed_pseudogene	2	74	2	3.45621	3.484845	3.51348	0.00136294	0.0011842	0.0336321	0.031662
chr22	19946906	19947006	7477452	0	+	0.46	(0.44,0.476]	chr22	762555	2	SS3_PROX	SS3_PROX:INTRON	COMT	ENSG00000093010.15	ENST00000676678.1:ENST00000403184.5:ENST00000361682.11:ENST00000403710.5:ENST00000407537.5:ENST00000467943.5:ENST00000678868.1:ENST00000678769.1:ENST00000428707.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	128	2	2.78545	3.48458	4.18371	3.37024e-4	2.6221e-5	0.0170609	0.00402631
chr10	77889228	77889328	4654418	0	-	0.45	(0.44,0.476]	chr10	428771	4	SS5_PROX	SS5_PROX:INTRON	DLG5	ENSG00000151208.17	ENST00000372391.7:ENST00000468332.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	68	2	3.45957	3.484555	3.50954	0.00116647	0.00106385	0.0312127	0.0300133
chr7	105013467	105013567	3374610	0	+	0.65	(0.57,1]	chr7	315850	129	INTRON	INTRON	KMT2E	ENSG00000005483.22	ENST00000622386.2	protein_coding	protein_coding	protein_coding	protein_coding	3	51	2	2.81057	3.48452	4.15847	0.00169295	1.26324e-5	0.0381936	0.00281675
chr10	100373892	100373987	4507848	0	+	0.463158	(0.44,0.476]	chr10	415081	5	EXON_LNCRNA	EXON_LNCRNA:INTRON	OLMALINC	ENSG00000235823.4	ENST00000668904.1:ENST00000641708.1:ENST00000659159.1:ENST00000654233.1:ENST00000641799.1:ENST00000641571.1:ENST00000608396.2:ENST00000641087.1:ENST00000663103.1:ENST00000657502.1:ENST00000686136.1:ENST00000690014.1:ENST00000666713.1:ENST00000661158.1:ENST00000664100.1:ENST00000657262.1:ENST00000666154.1:ENST00000666045.1:ENST00000662712.1:ENST00000654563.1:ENST00000662018.1:ENST00000667278.1:ENST00000658059.1:ENST00000659770.1:ENST00000656449.1:ENST00000665022.1:ENST00000659075.1:ENST00000661096.1:ENST00000668101.1:ENST00000668316.1:ENST00000664224.1:ENST00000665755.1:ENST00000454935.1:ENST00000654288.1:ENST00000669693.1:ENST00000664225.1:ENST00000664516.1	lncRNA	lncRNA	lncRNA	lncRNA	1	32	2	2.9586	3.48449	4.01038	0.0433743	0.00758318	0.148082	0.0773151
chr19	4398723	4398823	7120111	0	-	0.46	(0.44,0.476]	chr19	716291	28	INTRON	INTRON	SH3GL1	ENSG00000141985.9	ENST00000269886.7:ENST00000598564.5:ENST00000417295.6	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	2.9586	3.48449	4.01038	0.0433743	0.00758318	0.148082	0.0773151
chr2	47794202	47794301	777150	0	+	0.464646	(0.44,0.476]	chr2	87419	27	INTRON	INTRON	MSH6	ENSG00000116062.18	ENST00000652107.1:ENST00000445503.5:ENST00000614496.4:ENST00000456246.1:ENST00000234420.11:ENST00000673922.1:ENST00000673637.1:ENST00000540021.6:ENST00000455383.5:ENST00000538136.1:ENST00000420813.5:ENST00000411819.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	32	2	2.9586	3.48449	4.01038	0.0433743	0.00758318	0.148082	0.0773151
chr7	75186817	75186912	3557274	0	-	0.368421	(0.35,0.378]	chr7	331271	16	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GTF2IP1	ENSG00000277053.4	ENST00000618412.4:ENST00000622829.4:ENST00000621948.4	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript	9	188	2	2.45105	3.484375	4.5177	1.92646e-4	1.12155e-5	0.0121221	0.00265155
chr10	74103223	74103319	4455571	0	+	0.375	(0.35,0.378]	chr10	411473	18	INTRON	INTRON	VCL	ENSG00000035403.18	ENST00000623461.3:ENST00000372755.7:ENST00000624354.3:ENST00000211998.10:ENST00000478896.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	32	2	2.48657	3.484205	4.48184	0.032907	0.0191702	0.145164	0.108861
chr12	57305139	57305239	5337996	0	-	0.37	(0.35,0.378]	chr12	510693	1	SS5_PROX	SS5_PROX:INTRON	R3HDM2	ENSG00000179912.21	ENST00000402412.6:ENST00000347140.7:ENST00000358907.6:ENST00000441731.6:ENST00000634871.1:ENST00000403821.6:ENST00000551465.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	32	2	2.48657	3.484205	4.48184	0.032907	0.0191702	0.145164	0.108861
chr15	63217542	63217642	6041032	0	+	0.36	(0.35,0.378]	chr15	575230	274	INTRON	INTRON	RAB8B	ENSG00000166128.13	ENST00000558990.5:ENST00000558119.5:ENST00000559927.1:ENST00000321437.9:ENST00000559006.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	32	2	2.48657	3.484205	4.48184	0.032907	0.0191702	0.145164	0.108861
chr16	22256050	22256148	6321177	0	+	0.357143	(0.35,0.378]	chr16	605111	44	INTRON	INTRON	EEF2K	ENSG00000103319.12	ENST00000263026.10:ENST00000568269.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	32	2	2.48657	3.484205	4.48184	0.032907	0.0191702	0.145164	0.108861
chr3	43597931	43598031	1675200	0	-	0.37	(0.35,0.378]	chr3	171020	171	INTRON	INTRON	ANO10	ENSG00000160746.13	ENST00000292246.8:ENST00000350459.8:ENST00000396091.7:ENST00000414522.6:ENST00000451430.6:ENST00000427171.5:ENST00000428472.5	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	2.48657	3.484205	4.48184	0.032907	0.0191702	0.145164	0.108861
chrX	110035731	110035830	7700364	0	+	0.353535	(0.35,0.378]	chrX	788130	312	INTRON	INTRON	TMEM164	ENSG00000157600.12	ENST00000372072.7:ENST00000471255.5:ENST00000372073.5:ENST00000372068.7:ENST00000288381.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	32	2	2.48657	3.484205	4.48184	0.032907	0.0191702	0.145164	0.108861
chrX	119619074	119619170	7873161	0	-	0.375	(0.35,0.378]	chrX	801794	4	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	SEPTIN6	ENSG00000125354.24	ENST00000360156.11:ENST00000354228.8:ENST00000460411.5:ENST00000489216.5:ENST00000354416.7:ENST00000394610.7:ENST00000343984.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	32	2	2.48657	3.484205	4.48184	0.032907	0.0191702	0.145164	0.108861
chr8	18007092	18007190	3708614	0	+	0.295918	(0.28,0.32]	chr8	343996	3	INTRON	INTRON	PCM1	ENSG00000078674.19	ENST00000325083.13:ENST00000519253.5:ENST00000524226.5:ENST00000522275.5:ENST00000521338.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	57	2	1.71442	3.4841499999999996	5.25388	0.0454351	0.00385849	0.164236	0.0542786
chr17	40169762	40169854	6609435	0	+	0.5	(0.476,0.515]	chr17	643719	1	SS5_PROX	SS5_PROX:INTRON	CASC3	ENSG00000108349.17	ENST00000264645.12:ENST00000394114.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	110	2	2.44441	3.4841249999999997	4.52384	0.0036718	3.3232e-6	0.0535094	0.00118585
chr19	58390777	58390877	7107616	0	+	0.44	(0.408,0.44]	chr19	713447	19	INTRON	INTRON	RPS5	ENSG00000083845.9	ENST00000601521.5:ENST00000596314.5:ENST00000598098.5:ENST00000196551.8:ENST00000598495.5:ENST00000598807.1:ENST00000596046.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	142	2	3.17265	3.483995	3.79534	2.17043e-4	4.1906800000000003e-05	0.0129235	0.00549623
chr13	39037336	39037430	5576205	0	-	0.393617	(0.378,0.408]	chr13	533097	2	UTR5	UTR5:EXON_MRNA	PROSER1	ENSG00000120685.20	ENST00000352251.8:ENST00000625998.2:ENST00000418503.1	protein_coding	protein_coding	protein_coding	protein_coding	6	173	2	3.05386	3.48398	3.9141	4.83737e-5	1.1639e-5	0.00567485	0.00270022
chr4	2345901	2346001	2099001	0	-	0.29	(0.28,0.32]	chr4	207724	25	INTRON	INTRON	ZFYVE28	ENSG00000159733.14	ENST00000290974.7:ENST00000511071.5:ENST00000515312.5:ENST00000515169.5:ENST00000509171.5:ENST00000503000.1:ENST00000508184.5:ENST00000504743.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	41	2	2.73077	3.48398	4.23719	0.0264147	0.0220748	0.133676	0.115395
chr13	19760613	19760712	5552721	0	-	0.444444	(0.44,0.476]	chr13	530722	8	INTRON	INTRON	PSPC1	ENSG00000121390.19	ENST00000471658.5:ENST00000492741.5:ENST00000338910.9:ENST00000619300.4:ENST00000427943.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	42	2	2.44514	3.4839200000000003	4.5227	0.0128818	0.0087381	0.0926667	0.0845538
chr22	28274897	28274997	7568880	0	-	0.46	(0.44,0.476]	chr22	774264	1109	INTRON	INTRON	TTC28	ENSG00000100154.15	ENST00000397906.7:ENST00000612946.4	protein_coding	protein_coding	protein_coding	protein_coding	2	42	2	2.44514	3.4839200000000003	4.5227	0.0128818	0.0087381	0.0926667	0.0845538
chr8	47820418	47820518	3944286	0	-	0.25	[0,0.28]	chr8	361618	3	SS5_PROX	SS5_PROX:INTRON	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7	protein_coding	protein_coding	protein_coding	protein_coding	1	43	2	2.49527	3.483905	4.47254	0.0436497	0.020991	0.14882	0.122348
chr5	115841112	115841202	2707931	0	-	0.444444	(0.44,0.476]	chr5	254830	3	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ATG12	ENSG00000145782.13	ENST00000509910.2:ENST00000500945.2:ENST00000513322.5:ENST00000379594.7:ENST00000505993.5:ENST00000513167.1:ENST00000514775.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	35	2	2.86231	3.483855	4.1054	0.0220205	0.012214	0.123836	0.0910127
chr4	151002811	151002911	2271647	0	-	0.58	(0.57,1]	chr4	220921	734	INTRON	INTRON	LRBA	ENSG00000198589.14	ENST00000357115.9:ENST00000651943.2:ENST00000510413.5:ENST00000651035.1:ENST00000507224.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	59	2	2.76356	3.48365	4.20374	5.18582e-4	8.34216e-6	0.0209322	0.00208368
chr5	62321866	62321966	2362189	0	+	0.36	(0.35,0.378]	chr5	227725	96	INTRON	INTRON	KIF2A	ENSG00000068796.19	ENST00000401507.7:ENST00000407818.8:ENST00000674632.1:ENST00000674916.1:ENST00000676413.1:ENST00000676122.1:ENST00000674751.1:ENST00000514082.6:ENST00000675085.1:ENST00000504883.2:ENST00000381103.7:ENST00000676271.1:ENST00000512541.5:ENST00000674733.1:ENST00000506857.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	43	2	2.10859	3.483645	4.8587	0.0272722	0.00695662	0.136494	0.0718189
chr8	123344087	123344185	4042090	0	-	0.346939	(0.32,0.35]	chr8	368686	43	INTRON	INTRON	ATAD2	ENSG00000156802.13	ENST00000287394.10:ENST00000517666.5:ENST00000521903.5:ENST00000519124.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	78	2	3.31533	3.4836	3.65187	0.00323121	5.49434e-4	0.0507087	0.0213049
chr2	70223655	70223754	1152206	0	-	0.454545	(0.44,0.476]	chr2	123065	63	INTRON	INTRON	C2orf42:TIA1	ENSG00000115998.8:ENSG00000116001.17	ENST00000470096.1:ENST00000415783.6:ENST00000433529.7:ENST00000282574.8:ENST00000445587.5:ENST00000454815.6:ENST00000482876.5:ENST00000477415.5:ENST00000496096.5:ENST00000416149.6:ENST00000474699.1:ENST00000474809.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	139	2	2.24345	3.483515	4.72358	0.00250928	8.48557e-7	0.0446195	5.20245e-4
chr12	91467135	91467235	5383887	0	-	0.36	(0.35,0.378]	chr12	513479	674	INTRON	INTRON	ENSG00000289605	ENSG00000289605.1	ENST00000685093.1	lncRNA	lncRNA	lncRNA	lncRNA	1	35	2	2.47065	3.483455	4.49626	0.0386172	0.00917582	0.142656	0.0855292
chr3	107568149	107568248	1470199	0	+	0.363636	(0.35,0.378]	chr3	154137	414	INTRON	INTRON	BBX	ENSG00000114439.19	ENST00000415149.6:ENST00000402543.5:ENST00000325805.13:ENST00000485939.5:ENST00000427402.5:ENST00000416476.6:ENST00000454540.5:ENST00000449335.5:ENST00000431630.5:ENST00000458458.5:ENST00000456817.5:ENST00000456419.5:ENST00000402163.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	35	2	2.47065	3.483455	4.49626	0.0386172	0.00917582	0.142656	0.0855292
chr6	156970040	156970139	3009091	0	+	0.363636	(0.35,0.378]	chr6	281124	263	INTRON	INTRON	ARID1B	ENSG00000049618.24	ENST00000346085.10:ENST00000636930.2:ENST00000647938.1:ENST00000350026.10:ENST00000674298.1:ENST00000674190.1:ENST00000414678.7:ENST00000638000.1:ENST00000319584.11:ENST00000452544.2:ENST00000637887.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	35	2	2.47065	3.483455	4.49626	0.0386172	0.00917582	0.142656	0.0855292
chr12	21655077	21655177	5278008	0	-	0.42	(0.408,0.44]	chr12	503022	4	SS3_PROX	SS3_PROX:INTRON	LDHB	ENSG00000111716.14	ENST00000350669.5:ENST00000673047.2:ENST00000396076.5:ENST00000396075.5:ENST00000450584.5:ENST00000539782.1:ENST00000544151.1:ENST00000535112.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	123	2	3.42828	3.483415	3.53855	9.1223e-5	8.35406e-5	0.00815123	0.00798362
chr19	18361122	18361220	7032659	0	+	0.459184	(0.44,0.476]	chr19	700768	27	INTRON	INTRON	PGPEP1	ENSG00000130517.14	ENST00000269919.11:ENST00000604499.6:ENST00000252813.5:ENST00000596962.5:ENST00000600283.6:ENST00000597431.2:ENST00000597663.2:ENST00000595552.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	44	2	1.9039	3.48339	5.06288	0.0501498	0.00102416	0.156383	0.0294041
chr9	112629588	112629687	4187219	0	+	0.333333	(0.32,0.35]	chr9	381827	105	INTRON	INTRON	KIAA1958	ENSG00000165185.15	ENST00000337530.11:ENST00000536272.5	protein_coding	protein_coding	protein_coding	protein_coding	4	62	2	1.68188	3.4831900000000005	5.2845	0.031521	0.00240071	0.144381	0.0440612
chr15	84766910	84767010	6088504	0	+	0.41	(0.408,0.44]	chr15	579441	17	INTRON	INTRON	ZNF592	ENSG00000166716.10	ENST00000560079.7	protein_coding	protein_coding	protein_coding	protein_coding	2	41	2	2.21238	3.48318	4.75398	0.0193525	0.00703931	0.119831	0.0718189
chr16	29684295	29684394	6335432	0	+	0.484848	(0.476,0.515]	chr16	606813	47	INTRON	INTRON	QPRT	ENSG00000103485.19	ENST00000449759.2:ENST00000219771.7:ENST00000395384.9:ENST00000562473.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	41	2	2.19809	3.48318	4.76827	0.020317	0.00600704	0.121522	0.0674604
chr2	53875226	53875326	1119567	0	-	0.42	(0.408,0.44]	chr2	119872	2	SS5_PROX	SS5_PROX:INTRON	PSME4	ENSG00000068878.15	ENST00000404125.6:ENST00000389993.7:ENST00000476586.5:ENST00000466539.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	41	2	2.21238	3.48318	4.75398	0.0193525	0.00703931	0.119831	0.0718189
chr22	27922968	27923068	7492819	0	+	0.41	(0.408,0.44]	chr22	764485	5	EXON_LNCRNA	EXON_LNCRNA:INTRON	TTC28-AS1	ENSG00000235954.8	ENST00000430853.5:ENST00000434221.6:ENST00000417497.6:ENST00000662329.1:ENST00000424161.6:ENST00000419253.1:ENST00000437713.7:ENST00000454741.5:ENST00000659843.1:ENST00000665376.1:ENST00000453632.6:ENST00000662682.1:ENST00000655332.1:ENST00000454996.7:ENST00000665505.1:ENST00000435348.6:ENST00000428818.5:ENST00000664946.1:ENST00000425112.2:ENST00000417381.6:ENST00000654553.1:ENST00000669227.1:ENST00000670661.1:ENST00000452612.5:ENST00000688200.1:ENST00000690710.1:ENST00000670585.1:ENST00000662424.1	lncRNA	lncRNA	lncRNA	lncRNA	2	41	2	2.21238	3.48318	4.75398	0.0193525	0.00703931	0.119831	0.0718189
chr22	49545569	49545669	7601535	0	-	0.42	(0.408,0.44]	chr22	778566	1040	INTRON	INTRON	MIR3667HG	ENSG00000188511.13	ENST00000414287.5:ENST00000416411.1	lncRNA	lncRNA	lncRNA	lncRNA	2	41	2	2.21238	3.48318	4.75398	0.0193525	0.00703931	0.119831	0.0718189
chr9	37885215	37885314	4252601	0	-	0.434343	(0.408,0.44]	chr9	391641	32	INTRON	INTRON	SLC25A51	ENSG00000122696.14	ENST00000496760.5	protein_coding	processed_transcript	protein_coding	processed_transcript	2	41	2	2.21238	3.48318	4.75398	0.0193525	0.00703931	0.119831	0.0718189
chr3	47089241	47089340	1680843	0	-	0.414141	(0.408,0.44]	chr3	171569	6	INTRON	INTRON	SETD2	ENSG00000181555.22	ENST00000691544.1:ENST00000638947.2:ENST00000686876.1:ENST00000431180.5:ENST00000409792.4:ENST00000330022.11:ENST00000686773.1:ENST00000685005.1:ENST00000690461.1:ENST00000685505.1:ENST00000692883.1:ENST00000693321.1:ENST00000688290.1:ENST00000691902.1:ENST00000690157.1:ENST00000692362.1:ENST00000685237.1:ENST00000445387.5:ENST00000685399.1:ENST00000484689.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	57	2	1.8865	3.483165	5.07983	0.0148842	0.00247652	0.107116	0.0446195
chr3	15793824	15793924	1623780	0	-	0.49	(0.476,0.515]	chr3	168013	118	INTRON	INTRON	ANKRD28	ENSG00000206560.12	ENST00000399451.6:ENST00000624145.3:ENST00000683139.1:ENST00000412318.5:ENST00000497037.5:ENST00000451422.1:ENST00000498524.5:ENST00000439830.5:ENST00000461696.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	41	2	1.99341	3.48297	4.97253	0.037389	0.00311573	0.155878	0.0498063
chr9	77389415	77389513	4147127	0	+	0.479592	(0.476,0.515]	chr9	378117	44	INTRON	INTRON	VPS13A	ENSG00000197969.14	ENST00000376636.7:ENST00000360280.8	protein_coding	protein_coding	protein_coding	protein_coding	2	41	2	1.99341	3.48297	4.97253	0.037389	0.00311573	0.155878	0.0498063
chr7	155779014	155779113	3453266	0	+	0.555556	(0.515,0.57]	chr7	322755	40	UTR3	UTR3:EXON_MRNA	RBM33	ENSG00000184863.11	ENST00000401878.8:ENST00000341148.7	protein_coding	protein_coding	protein_coding	protein_coding	4	94	2	2.64171	3.4829399999999997	4.32417	0.00130576	7.95528e-6	0.0331539	0.0020223
chr13	79397004	79397104	5626317	0	-	0.53	(0.515,0.57]	chr13	536667	177	INTRON	INTRON	RBM26	ENSG00000139746.16	ENST00000438737.3:ENST00000438724.5:ENST00000622611.4:ENST00000267229.11:ENST00000472143.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	38	2	2.45585	3.482925	4.51	0.00809449	0.00797827	0.0798772	0.0766625
chr16	47592114	47592213	6344623	0	+	0.424242	(0.408,0.44]	chr16	608919	14	INTRON	INTRON	PHKB	ENSG00000102893.17	ENST00000566044.5:ENST00000299167.12:ENST00000696809.1:ENST00000323584.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	41	2	2.00768	3.482925	4.95817	0.035843	0.00372419	0.152216	0.0535094
chr7	75447716	75447816	3558544	0	-	0.52	(0.515,0.57]	chr7	331545	51	INTRON	INTRON	POM121C	ENSG00000272391.6	ENST00000615331.5:ENST00000398379.2	protein_coding	protein_coding	protein_coding	protein_coding	2	38	2	2.45585	3.482925	4.51	0.00809449	0.00797827	0.0798772	0.0766625
chr7	156785217	156785317	3686929	0	-	0.42	(0.408,0.44]	chr7	342058	51	INTRON	INTRON	LMBR1	ENSG00000105983.23	ENST00000353442.10:ENST00000448926.5:ENST00000415428.5:ENST00000454132.5:ENST00000434503.5:ENST00000430278.5:ENST00000434278.5:ENST00000444719.5:ENST00000461469.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	41	2	2.00768	3.482925	4.95817	0.035843	0.00372419	0.152216	0.0535094
chr9	111453849	111453949	4314987	0	-	0.41	(0.408,0.44]	chr9	396838	19	INTRON	INTRON	ECPAS	ENSG00000136813.15	ENST00000684092.1:ENST00000338205.9:ENST00000259335.8:ENST00000602447.5:ENST00000602978.1	protein_coding	protein_coding	protein_coding	protein_coding	2	41	2	2.00768	3.482925	4.95817	0.035843	0.00372419	0.152216	0.0535094
chr3	50094473	50094571	1424545	0	+	0.367347	(0.35,0.378]	chr3	150126	2	INTRON	INTRON	RBM6:RBM5	ENSG00000004534.15:ENSG00000003756.17	ENST00000434592.5:ENST00000347869.8:ENST00000404526.6:ENST00000469838.5:ENST00000433556.6:ENST00000441305.5:ENST00000438369.5:ENST00000464087.6:ENST00000417905.1:ENST00000395174.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	120	2	2.43849	3.48291	4.52733	0.00430822	4.06768e-6	0.0578073	0.0013379
chr10	63201373	63201472	4632731	0	-	0.222222	[0,0.28]	chr10	426179	3	INTRON	INTRON	JMJD1C	ENSG00000171988.20	ENST00000399262.7:ENST00000402544.5:ENST00000542921.5:ENST00000327520.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	42	2	2.33055	3.4828900000000003	4.63523	0.062338	0.0139836	0.175343	0.10247
chr3	193594307	193594406	1591864	0	+	0.272727	[0,0.28]	chr3	164714	5	INTRON	INTRON	OPA1	ENSG00000198836.11	ENST00000361828.7:ENST00000361715.6:ENST00000361150.6:ENST00000361908.8:ENST00000361510.8:ENST00000642445.1:ENST00000646277.1:ENST00000644595.1:ENST00000643737.1:ENST00000644841.1:ENST00000392436.7:ENST00000646085.1:ENST00000643329.1:ENST00000646793.1:ENST00000392437.6:ENST00000419435.5:ENST00000645553.1:ENST00000642593.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	42	2	2.33055	3.4828900000000003	4.63523	0.062338	0.0139836	0.175343	0.10247
chr1	225785363	225785463	327318	0	+	0.52	(0.515,0.57]	chr1	37657	16	INTRON	INTRON	SRP9	ENSG00000143742.14	ENST00000626563.2:ENST00000619790.4:ENST00000304786.12:ENST00000650651.1:ENST00000366839.8:ENST00000651465.1:ENST00000651761.1:ENST00000651653.1:ENST00000366838.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	124	2	3.30371	3.4828799999999998	3.66205	2.55594e-5	2.52567e-5	0.0041665	0.00394111
chr11	46365743	46365843	4784286	0	+	0.6	(0.57,1]	chr11	442424	1	SS3_PROX	SS3_PROX:INTRON	DGKZ	ENSG00000149091.15	ENST00000343674.10:ENST00000525242.5:ENST00000532868.6:ENST00000528615.5:ENST00000531879.5:ENST00000527674.5:ENST00000524984.5:ENST00000456247.7:ENST00000527911.5:ENST00000533376.5:ENST00000318201.12:ENST00000421244.6:ENST00000525434.5:ENST00000454345.6:ENST00000534215.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	21	2	2.36411	3.48286	4.60161	0.0408868	0.00142229	0.161534	0.0340865
chr12	104289465	104289542	5210033	0	+	0.597403	(0.57,1]	chr12	493200	1	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	TXNRD1	ENSG00000198431.17	ENST00000525566.6:ENST00000526266.5:ENST00000503506.6:ENST00000526691.5:ENST00000531691.5:ENST00000526390.5:ENST00000531689.5:ENST00000529546.5:ENST00000529751.1:ENST00000528079.6:ENST00000526580.5:ENST00000529784.5:ENST00000524698.5:ENST00000527688.5:ENST00000527335.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	21	2	2.36411	3.48286	4.60161	0.0408868	0.00142229	0.161534	0.0340865
chr17	2623028	2623127	6547731	0	+	0.616162	(0.57,1]	chr17	635219	88	INTRON	INTRON	PAFAH1B1	ENSG00000007168.14	ENST00000576586.5:ENST00000397195.10:ENST00000676201.1:ENST00000575477.5:ENST00000675621.1:ENST00000676353.1:ENST00000674717.1:ENST00000675202.1:ENST00000675764.1:ENST00000674608.1:ENST00000676077.1:ENST00000676098.1:ENST00000572915.6:ENST00000570400.1:ENST00000571289.1:ENST00000675430.1:ENST00000675331.1:ENST00000676188.1:ENST00000574816.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	21	2	2.36411	3.48286	4.60161	0.0408868	0.00142229	0.161534	0.0340865
chr17	80585450	80585550	6685191	0	+	0.59	(0.57,1]	chr17	653399	393	INTRON	INTRON	RPTOR	ENSG00000141564.15	ENST00000574767.5:ENST00000577161.5:ENST00000306801.8:ENST00000649732.1:ENST00000570891.5:ENST00000544334.6:ENST00000573746.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	21	2	2.36411	3.48286	4.60161	0.0408868	0.00142229	0.161534	0.0340865
chr21	43885906	43886006	7413997	0	+	0.63	(0.57,1]	chr21	755692	29	INTRON	INTRON	AGPAT3	ENSG00000160216.21	ENST00000291572.13:ENST00000448287.5:ENST00000398061.5	protein_coding	protein_coding	protein_coding	protein_coding	1	21	2	2.36411	3.48286	4.60161	0.0408868	0.00142229	0.161534	0.0340865
chr22	39315955	39316055	7589766	0	-	0.59	(0.57,1]	chr22	777087	4	SS3_PROX	SS3_PROX:INTRON	RPL3	ENSG00000100316.16	ENST00000216146.9:ENST00000401609.5:ENST00000465618.5:ENST00000402527.5:ENST00000453303.5:ENST00000484358.1:ENST00000427905.5:ENST00000420536.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	21	2	2.36411	3.48286	4.60161	0.0408868	0.00142229	0.161534	0.0340865
chr3	42601163	42601263	1405976	0	+	0.58	(0.57,1]	chr3	147650	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	NKTR	ENSG00000114857.19	ENST00000468735.6:ENST00000460910.5:ENST00000487466.5:ENST00000429888.5:ENST00000232978.13:ENST00000459950.1:ENST00000442970.5:ENST00000445842.1:ENST00000478488.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	21	2	2.36411	3.48286	4.60161	0.0408868	0.00142229	0.161534	0.0340865
chr1	231261655	231261749	337227	0	+	0.319149	(0.28,0.32]	chr1	39197	6	INTRON	INTRON	GNPAT	ENSG00000116906.13	ENST00000436239.5:ENST00000366647.9:ENST00000644483.1:ENST00000416000.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	40	2	2.62686	3.4827450000000004	4.33863	0.0289217	0.0207276	0.1274	0.122348
chr16	30280161	30280251	6472799	0	-	0.288889	(0.28,0.32]	chr16	625631	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SMG1P5	ENSG00000183604.15	ENST00000529428.5	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	1	40	2	2.62686	3.4827450000000004	4.33863	0.0289217	0.0207276	0.1274	0.122348
chr1	24769999	24770099	46307	0	+	0.4	(0.378,0.408]	chr1	5764	240	INTRON	INTRON	CLIC4	ENSG00000169504.15	ENST00000488683.1:ENST00000497755.1:ENST00000489758.1:ENST00000374379.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	32	2	2.85854	3.4825749999999998	4.10661	0.0399023	0.0107837	0.143072	0.0920575
chr14	105222094	105222184	5973552	0	-	0.388889	(0.378,0.408]	chr14	567995	3	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	BRF1	ENSG00000185024.18	ENST00000547530.7:ENST00000379937.6:ENST00000392557.8:ENST00000446501.6:ENST00000635152.1:ENST00000551787.5:ENST00000619151.4:ENST00000327359.7:ENST00000440513.7:ENST00000547562.5:ENST00000547052.1:ENST00000549655.5:ENST00000552127.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	32	2	2.85854	3.4825749999999998	4.10661	0.0399023	0.0107837	0.143072	0.0920575
chr5	71537654	71537753	2384421	0	+	0.383838	(0.378,0.408]	chr5	229998	49	INTRON	INTRON	BDP1	ENSG00000145734.20	ENST00000358731.9:ENST00000508917.6:ENST00000514903.7:ENST00000525844.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	32	2	2.85854	3.4825749999999998	4.10661	0.0399023	0.0107837	0.143072	0.0920575
chr7	74714756	74714856	3335827	0	+	0.38	(0.378,0.408]	chr7	310393	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	GTF2I	ENSG00000263001.8	ENST00000650807.1:ENST00000690345.1:ENST00000573035.6:ENST00000614986.4:ENST00000620879.4:ENST00000621734.4:ENST00000443166.5:ENST00000490431.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	32	2	2.85854	3.4825749999999998	4.10661	0.0399023	0.0107837	0.143072	0.0920575
chr8	38203234	38203333	3735346	0	+	0.393939	(0.378,0.408]	chr8	347049	101	INTRON	INTRON	BAG4	ENSG00000156735.11	ENST00000521282.1:ENST00000432471.6:ENST00000287322.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	32	2	2.85854	3.4825749999999998	4.10661	0.0399023	0.0107837	0.143072	0.0920575
chr14	21390746	21390846	5835595	0	-	0.37	(0.35,0.378]	chr14	554614	4	SS5_PROX	SS5_PROX:INTRON	CHD8	ENSG00000100888.15	ENST00000430710.8:ENST00000646647.2:ENST00000645929.1:ENST00000645206.1:ENST00000557364.6:ENST00000643469.1:ENST00000553870.2:ENST00000555935.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	36	2	2.66547	3.48254	4.29961	0.0233639	0.0158483	0.118323	0.109464
chr14	34851168	34851268	5868202	0	-	0.47	(0.44,0.476]	chr14	557409	221	INTRON	INTRON	BAZ1A	ENSG00000198604.11	ENST00000358716.8:ENST00000360310.6:ENST00000382422.6:ENST00000553573.1:ENST00000553853.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	34	2	2.74063	3.4822800000000003	4.22393	0.0176095	0.0162322	0.109464	0.105143
chr2	23855609	23855708	1080224	0	-	0.474747	(0.44,0.476]	chr2	115293	212	INTRON	INTRON	ATAD2B	ENSG00000119778.15	ENST00000238789.10	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	2.74063	3.4822800000000003	4.22393	0.0176095	0.0162322	0.109464	0.105143
chr18	9178288	9178388	6869346	0	+	0.38	(0.378,0.408]	chr18	680561	401	INTRON	INTRON	ANKRD12	ENSG00000101745.17	ENST00000585234.5:ENST00000262126.9:ENST00000577992.1:ENST00000540578.6:ENST00000581635.5:ENST00000400020.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	76	2	2.72993	3.482215	4.2345	0.0188736	2.07828e-5	0.108861	0.00353137
chr19	49106328	49106428	7088594	0	+	0.35	(0.32,0.35]	chr19	709569	12	INTRON	INTRON	SNRNP70	ENSG00000104852.15	ENST00000601065.5:ENST00000598441.6:ENST00000401730.5:ENST00000221448.9:ENST00000595231.5:ENST00000544278.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	54	2	1.83315	3.48219	5.13123	0.0313348	0.00394704	0.144381	0.0548259
chr9	37187653	37187753	4118333	0	+	0.35	(0.32,0.35]	chr9	375389	7	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000461038.5:ENST00000488607.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	54	2	1.83315	3.48219	5.13123	0.0313348	0.00394704	0.144381	0.0548259
chr19	28496747	28496847	7166062	0	-	0.49	(0.476,0.515]	chr19	724189	285	INTRON	INTRON	ENSG00000283403:ENSG00000267243	ENSG00000283403.1:ENSG00000267243.6	ENST00000592347.5:ENST00000593065.5	lncRNA	lncRNA	lncRNA	lncRNA	10	274	2	2.97976	3.482025	3.98429	2.75667e-5	6.34397e-8	0.00430942	1.09308e-4
chr20	47502918	47503018	7281007	0	+	0.45	(0.44,0.476]	chr20	740469	5	INTRON	INTRON	NCOA3	ENSG00000124151.19	ENST00000371998.8:ENST00000372004.7:ENST00000371997.3	protein_coding	protein_coding	protein_coding	protein_coding	4	109	2	3.1835	3.48198	3.78046	3.54249e-4	6.82077e-5	0.0174886	0.00684369
chr17	82256572	82256671	6852658	0	-	0.454545	(0.44,0.476]	chr17	679151	6	INTRON	INTRON	CSNK1D	ENSG00000141551.15	ENST00000398519.9:ENST00000314028.11:ENST00000581241.5:ENST00000392334.6:ENST00000403276.7:ENST00000582844.5:ENST00000580446.1:ENST00000581660.5:ENST00000578194.5:ENST00000579316.5:ENST00000584472.5:ENST00000580061.5:ENST00000585026.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	91	2	3.06222	3.48193	3.90164	8.483e-4	1.25572e-4	0.0267232	0.00957656
chr2	38320916	38321016	1098778	0	-	0.45	(0.44,0.476]	chr2	117856	15	INTRON	INTRON	ATL2	ENSG00000119787.14	ENST00000378954.9:ENST00000406122.5:ENST00000405384.6:ENST00000402054.5:ENST00000419554.6:ENST00000651368.1:ENST00000452935.6:ENST00000449130.5:ENST00000443098.5:ENST00000456736.5:ENST00000474535.2:ENST00000472097.1:ENST00000451483.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	44	2	1.96602	3.48192	4.99782	0.0426807	0.0013223	0.148082	0.0333932
chr6	15246068	15246162	2822944	0	+	0.414894	(0.408,0.44]	chr6	265182	1	UTR5	UTR5:EXON_MRNA	JARID2	ENSG00000008083.14	ENST00000341776.7	protein_coding	protein_coding	protein_coding	protein_coding	15	412	2	3.37315	3.481855	3.59056	2.56907e-6	2.39558e-8	0.00112743	5.79662e-5
chr4	94481246	94481346	1998676	0	+	0.41	(0.408,0.44]	chr4	199549	242	INTRON	INTRON	PDLIM5	ENSG00000163110.15	ENST00000437932.5:ENST00000615540.4:ENST00000318007.9:ENST00000380180.7:ENST00000514830.5:ENST00000509333.5:ENST00000503974.5:ENST00000317968.9:ENST00000627587.2:ENST00000542407.5:ENST00000514743.5:ENST00000508216.5:ENST00000511767.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	68	2	3.41144	3.481795	3.55215	0.00178336	7.01039e-4	0.0379201	0.0241881
chr3	47780902	47781002	1685068	0	-	0.32	(0.28,0.32]	chr3	172122	76	INTRON	INTRON	SMARCC1	ENSG00000173473.11	ENST00000254480.10:ENST00000425518.5:ENST00000454240.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	138	2	2.56602	3.48177	4.39752	0.00326427	1.48497e-5	0.0508595	0.00289599
chr10	72503261	72503361	4645688	0	-	0.36	(0.35,0.378]	chr10	427402	253	INTRON	INTRON	MICU1	ENSG00000107745.20	ENST00000361114.10:ENST00000476605.7:ENST00000642044.1:ENST00000635239.1:ENST00000418483.6:ENST00000398763.8:ENST00000489666.2:ENST00000604238.2:ENST00000603011.5:ENST00000604529.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	32	2	2.57049	3.4817600000000004	4.39303	0.0262669	0.0237246	0.133676	0.118716
chr2	177241454	177241554	1275614	0	-	0.36	(0.35,0.378]	chr2	134708	68	INTRON	INTRON	NFE2L2	ENSG00000116044.16	ENST00000397063.8:ENST00000464747.5:ENST00000397062.8:ENST00000446151.6:ENST00000449627.1:ENST00000448782.5:ENST00000430047.1:ENST00000586532.5:ENST00000421929.5:ENST00000423513.5:ENST00000588123.1:ENST00000477534.1:ENST00000462023.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	32	2	2.57049	3.4817600000000004	4.39303	0.0262669	0.0237246	0.133676	0.118716
chr22	17906148	17906248	7549485	0	-	0.36	(0.35,0.378]	chr22	771749	2	SS5_PROX	SS5_PROX:INTRON	MICAL3	ENSG00000243156.9	ENST00000441493.7:ENST00000672019.1:ENST00000400561.6:ENST00000495076.5:ENST00000414725.6:ENST00000383094.7:ENST00000585038.1:ENST00000424046.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	32	2	2.57049	3.4817600000000004	4.39303	0.0262669	0.0237246	0.133676	0.118716
chr5	95778458	95778557	2431727	0	+	0.373737	(0.35,0.378]	chr5	233684	79	INTRON	INTRON	RHOBTB3	ENSG00000164292.13	ENST00000379982.8:ENST00000504179.5:ENST00000510313.1	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	2.57049	3.4817600000000004	4.39303	0.0262669	0.0237246	0.133676	0.118716
chr6	87556020	87556119	3152293	0	-	0.363636	(0.35,0.378]	chr6	294051	1	INTRON	INTRON	RARS2	ENSG00000146282.19	ENST00000691533.1:ENST00000493269.2:ENST00000685069.1:ENST00000691725.1:ENST00000369536.10:ENST00000693431.1:ENST00000685408.1:ENST00000693327.1:ENST00000691205.1:ENST00000689174.1:ENST00000692684.1:ENST00000686988.1:ENST00000690622.1:ENST00000689206.1:ENST00000688532.1:ENST00000686154.1:ENST00000686407.1:ENST00000685701.1:ENST00000689561.1:ENST00000691238.1:ENST00000685336.1:ENST00000686284.1:ENST00000687586.1:ENST00000685376.1:ENST00000685881.1:ENST00000691815.1:ENST00000687090.1:ENST00000451155.2:ENST00000687437.1:ENST00000692394.1:ENST00000687729.1:ENST00000693605.1:ENST00000687909.1:ENST00000688391.1:ENST00000690884.1:ENST00000692843.1:ENST00000684790.1:ENST00000692270.1:ENST00000685219.1:ENST00000689952.1:ENST00000687579.1:ENST00000686857.1:ENST00000690205.1:ENST00000690705.1:ENST00000686142.1:ENST00000688106.1:ENST00000686196.1:ENST00000687078.1:ENST00000690555.1:ENST00000693524.1:ENST00000691259.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	32	2	2.57049	3.4817600000000004	4.39303	0.0262669	0.0237246	0.133676	0.118716
chr1	51747780	51747868	100710	0	+	0.477273	(0.476,0.515]	chr1	13294	7	INTRON	INTRON	OSBPL9	ENSG00000117859.19	ENST00000371714.5:ENST00000428468.6:ENST00000447887.5:ENST00000495776.5:ENST00000435274.6:ENST00000453295.5:ENST00000489990.5:ENST00000484890.5:ENST00000532975.5:ENST00000534040.5:ENST00000527631.5:ENST00000531828.5:ENST00000361556.9:ENST00000473207.6:ENST00000533884.5:ENST00000481937.5:ENST00000526917.5:ENST00000462759.5:ENST00000486942.5:ENST00000467064.5:ENST00000524620.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	44	2	1.72558	3.481635	5.23769	0.0767648	5.17244e-4	0.196164	0.0203753
chrX	20141324	20141424	7772205	0	-	0.65	(0.57,1]	chrX	794445	3	SS5_PROX	SS5_PROX:INTRON	EIF1AX	ENSG00000173674.11	ENST00000379607.10:ENST00000379593.1	protein_coding	protein_coding	protein_coding	protein_coding	5	76	2	3.33173	3.481485	3.63124	2.87208e-4	2.89691e-6	0.0150568	0.00119813
chr15	82367763	82367863	6075658	0	+	0.37	(0.35,0.378]	chr15	578727	120	INTRON	INTRON	UBE2Q2P2	ENSG00000259429.5	ENST00000618775.4	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	1	32	2	2.39746	3.4814800000000004	4.5655	0.041314	0.0155464	0.161534	0.100909
chr22	19905321	19905420	7555949	0	-	0.353535	(0.35,0.378]	chr22	772518	59	INTRON	INTRON	TXNRD2	ENSG00000184470.21	ENST00000400518.5:ENST00000542719.6:ENST00000494454.5:ENST00000474308.5:ENST00000400525.6:ENST00000400521.7:ENST00000400519.6:ENST00000635155.1:ENST00000491939.6:ENST00000334363.14:ENST00000475995.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	32	2	2.39746	3.4814800000000004	4.5655	0.041314	0.0155464	0.161534	0.100909
chr4	67699467	67699565	2154452	0	-	0.367347	(0.35,0.378]	chr4	212198	24	INTRON	INTRON	UBA6	ENSG00000033178.13	ENST00000322244.10:ENST00000420827.2:ENST00000429659.7:ENST00000506571.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	32	2	2.39746	3.4814800000000004	4.5655	0.041314	0.0155464	0.161534	0.100909
chr6	4874296	4874395	2791842	0	+	0.414141	(0.408,0.44]	chr6	263602	376	INTRON	INTRON	CDYL	ENSG00000153046.18	ENST00000328908.9:ENST00000491864.1:ENST00000440139.5:ENST00000483019.1:ENST00000397588.8:ENST00000472453.5:ENST00000449732.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	42	2	2.44674	3.48139	4.51604	0.0137419	0.00868283	0.0949306	0.0842798
chr17	75143676	75143775	6835971	0	-	0.494949	(0.476,0.515]	chr17	675456	71	INTRON	INTRON	JPT1	ENSG00000189159.16	ENST00000409753.8:ENST00000476258.5:ENST00000482348.5:ENST00000304834.11:ENST00000356033.8:ENST00000470924.5:ENST00000481094.1:ENST00000481647.5:ENST00000580380.1:ENST00000581874.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	42	2	2.43242	3.481325	4.53023	0.0119748	0.0091895	0.0899583	0.0855292
chr7	148851204	148851304	3670432	0	-	0.48	(0.476,0.515]	chr7	340628	35	INTRON	INTRON	EZH2	ENSG00000106462.12	ENST00000683292.1:ENST00000320356.7:ENST00000492143.5:ENST00000478654.5:ENST00000350995.6:ENST00000460911.5:ENST00000683744.1:ENST00000682317.1:ENST00000682263.1:ENST00000684300.1:ENST00000476773.5:ENST00000483967.5:ENST00000498186.5:ENST00000483012.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	42	2	2.43242	3.481325	4.53023	0.0119748	0.0091895	0.0899583	0.0855292
chrX	101010200	101010295	7854850	0	-	0.494737	(0.476,0.515]	chrX	800763	10	UTR3	UTR3:EXON_MRNA	TRMT2B	ENSG00000188917.15	ENST00000545398.5:ENST00000372936.4:ENST00000372939.5:ENST00000372935.5	protein_coding	protein_coding	protein_coding	protein_coding	2	44	2	2.10874	3.481265	4.85379	0.0285608	0.00234214	0.12666	0.0442989
chr14	55292347	55292447	5726005	0	+	0.45	(0.44,0.476]	chr14	543454	69	INTRON	INTRON	FBXO34	ENSG00000178974.11	ENST00000681400.1:ENST00000681904.1:ENST00000679934.1:ENST00000681074.1:ENST00000680682.1:ENST00000680658.1:ENST00000313833.5:ENST00000554940.1:ENST00000440021.1:ENST00000555087.1:ENST00000557647.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	38	2	3.12799	3.481195	3.8344	0.041276	0.0050635	0.161534	0.0621733
chr4	99086720	99086818	2208713	0	-	0.510204	(0.476,0.515]	chr4	216250	7	INTRON	INTRON	ADH5	ENSG00000197894.12	ENST00000296412.14:ENST00000626055.2:ENST00000512659.5:ENST00000508511.5:ENST00000502590.5:ENST00000505652.1:ENST00000508146.5:ENST00000507102.5:ENST00000502386.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	199	2	3.33067	3.481195	3.63172	1.44974e-5	3.9871e-6	0.00304732	0.00131958
chr19	1383526	1383608	6994954	0	+	0.597561	(0.57,1]	chr19	693117	1	UTR5	UTR5:EXON_MRNA	NDUFS7	ENSG00000115286.21	ENST00000546283.5	protein_coding	protein_coding	protein_coding	protein_coding	47	672	2	3.12528	3.481165	3.83705	5.35808e-9	1e-12	1.7771e-5	5.45623e-8
chr6	43785117	43785215	2872218	0	+	0.571429	(0.57,1]	chr6	272368	6	UTR3	UTR3:EXON_MRNA	VEGFA	ENSG00000112715.26	ENST00000672860.3:ENST00000372067.8:ENST00000425836.8:ENST00000372064.9:ENST00000372077.8:ENST00000480614.1:ENST00000497139.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	51	668	2	3.41214	3.481055	3.54997	1.10489e-10	8.96028e-12	1.15489e-6	2.58826e-7
chr3	47753472	47753571	1684792	0	-	0.545455	(0.515,0.57]	chr3	172116	71	INTRON	INTRON	SMARCC1	ENSG00000173473.11	ENST00000254480.10:ENST00000425518.5:ENST00000454240.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	51	2	1.7407	3.4810549999999996	5.22141	0.0242347	6.44141e-4	0.130613	0.0231685
chr1	156213876	156213976	230903	0	+	0.4	(0.378,0.408]	chr1	27257	3	INTRON	INTRON	PMF1	ENSG00000160783.19	ENST00000368279.7:ENST00000466489.1:ENST00000368273.8:ENST00000368277.3:ENST00000606952.5:ENST00000497069.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	95	2	3.09258	3.481045	3.86951	8.09686e-4	1.55755e-4	0.0263656	0.0106835
chr11	63688869	63688969	4799987	0	+	0.35	(0.32,0.35]	chr11	444936	67	INTRON	INTRON	RTN3	ENSG00000133318.14	ENST00000341307.6:ENST00000356000.7:ENST00000542238.5:ENST00000538995.1:ENST00000339997.8:ENST00000540798.5:ENST00000537981.5:ENST00000377819.10:ENST00000536011.5:ENST00000543123.1:ENST00000543552.5:ENST00000545432.5:ENST00000338850.5:ENST00000354497.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	45	2	2.19668	3.4808450000000004	4.76501	0.021398	0.0114287	0.123719	0.0886611
chr20	17969641	17969700	7243217	0	+	0.338983	(0.32,0.35]	chr20	735409	1	SS3_PROX	SS3_PROX:INTRON	MGME1	ENSG00000125871.14	ENST00000377710.10:ENST00000377709.1:ENST00000377704.4	protein_coding	protein_coding	protein_coding	protein_coding	2	45	2	2.19668	3.4808450000000004	4.76501	0.021398	0.0114287	0.123719	0.0886611
chr7	121214020	121214120	3395909	0	+	0.33	(0.32,0.35]	chr7	317781	640	INTRON	INTRON	CPED1	ENSG00000106034.18	ENST00000310396.10:ENST00000450913.6:ENST00000423795.5:ENST00000466055.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	45	2	2.19668	3.4808450000000004	4.76501	0.021398	0.0114287	0.123719	0.0886611
chr11	102422474	102422574	5025665	0	-	0.36	(0.35,0.378]	chr11	473887	199	INTRON	INTRON	TMEM123	ENSG00000152558.15	ENST00000361236.7:ENST00000398136.7:ENST00000532161.5:ENST00000528969.5:ENST00000529492.5:ENST00000525577.5:ENST00000531103.5:ENST00000526676.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	43	2	2.17079	3.4807900000000003	4.79079	0.0225978	0.00846427	0.124921	0.0776969
chr1	29080793	29080890	60644	0	+	0.298969	(0.28,0.32]	chr1	7752	15	EXON_LNCRNA	EXON_LNCRNA:INTRON	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000647918.1:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000373798.5:ENST00000649674.1:ENST00000343067.9:ENST00000349460.9:ENST00000646871.1:ENST00000488277.1:ENST00000490308.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	35	2	2.53522	3.48076	4.4263	0.0330296	0.0310424	0.143457	0.133816
chr1	54038785	54038883	461442	0	-	0.295918	(0.28,0.32]	chr1	55582	17	INTRON	INTRON	TMEM59	ENSG00000116209.12	ENST00000234831.10:ENST00000371348.5:ENST00000371344.5:ENST00000371341.5:ENST00000440019.5:ENST00000420738.5:ENST00000452421.5	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	2.53522	3.48076	4.4263	0.0330296	0.0310424	0.143457	0.133816
chr10	91836118	91836218	4488414	0	+	0.3	(0.28,0.32]	chr10	413199	17	INTRON	INTRON	TNKS2	ENSG00000107854.6	ENST00000371627.5	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	2.53522	3.48076	4.4263	0.0330296	0.0310424	0.143457	0.133816
chr11	47815187	47815284	4951825	0	-	0.28866000000000003	(0.28,0.32]	chr11	464578	2	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	NUP160	ENSG00000030066.14	ENST00000694866.1:ENST00000378460.7:ENST00000530326.5:ENST00000528071.5:ENST00000528501.5:ENST00000531016.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	35	2	2.53522	3.48076	4.4263	0.0330296	0.0310424	0.143457	0.133816
chr11	129868124	129868220	5051592	0	-	0.291667	(0.28,0.32]	chr11	476662	18	INTRON	INTRON	NFRKB	ENSG00000170322.15	ENST00000682444.1:ENST00000446488.7:ENST00000524794.5:ENST00000524746.5	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	2.53522	3.48076	4.4263	0.0330296	0.0310424	0.143457	0.133816
chr17	57261450	57261550	6632792	0	+	0.3	(0.28,0.32]	chr17	647988	10	INTRON	INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000581776.5:ENST00000581523.5:ENST00000674961.1:ENST00000582453.5:ENST00000675656.1:ENST00000322684.7:ENST00000579590.5:ENST00000579531.5:ENST00000676073.1:ENST00000676105.1:ENST00000584476.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	35	2	2.53522	3.48076	4.4263	0.0330296	0.0310424	0.143457	0.133816
chr2	64018237	64018337	1140002	0	-	0.32	(0.28,0.32]	chr2	122046	339	INTRON	INTRON	VPS54	ENSG00000143952.20	ENST00000409558.8:ENST00000272322.9	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	2.53522	3.48076	4.4263	0.0330296	0.0310424	0.143457	0.133816
chr2	106188953	106189053	1202299	0	-	0.3	(0.28,0.32]	chr2	128469	225	INTRON	INTRON	UXS1	ENSG00000115652.15	ENST00000283148.12:ENST00000409501.7:ENST00000441952.5:ENST00000457835.5:ENST00000483426.5	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	2.53522	3.48076	4.4263	0.0330296	0.0310424	0.143457	0.133816
chr20	35805799	35805899	7263224	0	+	0.29	(0.28,0.32]	chr20	738073	38	INTRON	INTRON	PHF20	ENSG00000025293.17	ENST00000461122.5:ENST00000374012.8:ENST00000452270.5:ENST00000374000.8:ENST00000339089.10:ENST00000481202.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	35	2	2.53522	3.48076	4.4263	0.0330296	0.0310424	0.143457	0.133816
chr3	47106818	47106918	1681024	0	-	0.31	(0.28,0.32]	chr3	171593	3	INTRON	INTRON	SETD2	ENSG00000181555.22	ENST00000691544.1:ENST00000638947.2:ENST00000686876.1:ENST00000431180.5:ENST00000409792.4:ENST00000330022.11:ENST00000686773.1:ENST00000685005.1:ENST00000690461.1:ENST00000685505.1:ENST00000692883.1:ENST00000693321.1:ENST00000688290.1:ENST00000691902.1:ENST00000690157.1:ENST00000692362.1:ENST00000445387.5:ENST00000685399.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	35	2	2.53522	3.48076	4.4263	0.0330296	0.0310424	0.143457	0.133816
chr3	128768927	128769027	1497638	0	+	0.3	(0.28,0.32]	chr3	156330	422	INTRON	INTRON	RAB7A	ENSG00000075785.14	ENST00000676214.1:ENST00000675864.1:ENST00000675712.1:ENST00000676425.1:ENST00000490093.6:ENST00000675342.1:ENST00000265062.8:ENST00000674748.1:ENST00000493186.6:ENST00000482525.5:ENST00000491681.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	35	2	2.53522	3.48076	4.4263	0.0330296	0.0310424	0.143457	0.133816
chr6	75648400	75648500	2905421	0	+	0.32	(0.28,0.32]	chr6	274530	2	INTRON	INTRON	SENP6	ENSG00000112701.18	ENST00000370010.6:ENST00000447266.7:ENST00000327284.12:ENST00000483859.6:ENST00000424947.6:ENST00000436928.7:ENST00000485497.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	35	2	2.53522	3.48076	4.4263	0.0330296	0.0310424	0.143457	0.133816
chr9	37589915	37590012	4251769	0	-	0.319588	(0.28,0.32]	chr9	391578	6	INTRON	INTRON	TOMM5	ENSG00000175768.13	ENST00000540941.1:ENST00000321301.7:ENST00000377773.9:ENST00000401811.3:ENST00000544379.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	35	2	2.53522	3.48076	4.4263	0.0330296	0.0310424	0.143457	0.133816
chr9	112291354	112291454	4317536	0	-	0.37	(0.35,0.378]	chr9	397072	150	INTRON	INTRON	PTBP3	ENSG00000119314.16	ENST00000334318.10:ENST00000458258.5:ENST00000374257.6:ENST00000374255.6:ENST00000343327.6:ENST00000487997.1:ENST00000210227.4:ENST00000450374.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	54	2	2.24196	3.4807449999999998	4.71953	0.0103314	0.00744693	0.0850389	0.0772645
chr14	20320792	20320892	5833029	0	-	0.38	(0.378,0.408]	chr14	553951	4	SS3_PROX	SS3_PROX:INTRON	CCNB1IP1	ENSG00000100814.18	ENST00000353689.8:ENST00000437553.6:ENST00000398160.6:ENST00000358932.9:ENST00000398169.7:ENST00000398163.6:ENST00000556854.5:ENST00000557665.5:ENST00000556563.5:ENST00000553291.5:ENST00000553516.5:ENST00000555348.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	42	2	2.29798	3.48068	4.66338	0.0147606	0.0103469	0.106702	0.0850389
chr2	20332037	20332137	1076598	0	-	0.4	(0.378,0.408]	chr2	115040	1	SS3_PROX	SS3_PROX:INTRON	PUM2	ENSG00000055917.16	ENST00000361078.7:ENST00000442400.5:ENST00000420234.5:ENST00000429419.6:ENST00000432105.5:ENST00000446940.5:ENST00000424110.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	42	2	2.29798	3.48068	4.66338	0.0147606	0.0103469	0.106702	0.0850389
chr4	2844540	2844638	1915030	0	+	0.397959	(0.378,0.408]	chr4	192242	5	UTR5	UTR5:EXON_MRNA:INTRON	ADD1	ENSG00000087274.19	ENST00000683351.1:ENST00000398125.5:ENST00000264758.11:ENST00000508684.5:ENST00000510101.5:ENST00000511797.5:ENST00000539108.5:ENST00000513328.6:ENST00000509039.5:ENST00000508277.5:ENST00000503455.6:ENST00000540541.1:ENST00000355842.7:ENST00000651918.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	42	2	2.29798	3.48068	4.66338	0.0147606	0.0103469	0.106702	0.0850389
chr5	150444641	150444741	2751191	0	-	0.34	(0.32,0.35]	chr5	259118	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	RPS14	ENSG00000164587.13	ENST00000407193.7:ENST00000401695.8:ENST00000521466.5:ENST00000519690.1:ENST00000312037.6:ENST00000518139.5:ENST00000642507.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	134	2	2.43956	3.48068	4.5218	0.00352597	1.46106e-5	0.0546236	0.00306551
chr6	15296131	15296231	2823447	0	+	0.29	(0.28,0.32]	chr6	265190	468	INTRON	INTRON	JARID2	ENSG00000008083.14	ENST00000341776.7:ENST00000397311.4	protein_coding	protein_coding	protein_coding	protein_coding	2	52	2	1.76293	3.4806749999999997	5.19842	0.0766478	0.00152333	0.196164	0.0360297
chr14	99973355	99973455	5813046	0	+	0.37	(0.35,0.378]	chr14	551194	9	INTRON	INTRON	EVL	ENSG00000196405.13	ENST00000402714.6	protein_coding	protein_coding	protein_coding	protein_coding	2	43	2	1.9755	3.4805550000000003	4.98561	0.0398617	0.00474226	0.161534	0.0600445
chr12	91381733	91381833	5383029	0	-	0.4	(0.378,0.408]	chr12	513463	114	INTRON	INTRON	ENSG00000289605	ENSG00000289605.1	ENST00000685093.1	lncRNA	lncRNA	lncRNA	lncRNA	3	99	2	3.35676	3.480525	3.60429	5.71664e-4	2.33175e-4	0.0217398	0.013966
chr6	36537879	36537979	3089286	0	-	0.35	(0.32,0.35]	chr6	288978	119	INTRON	INTRON	STK38	ENSG00000112079.9	ENST00000229812.8	protein_coding	protein_coding	protein_coding	protein_coding	2	45	2	1.88468	3.480485	5.07629	0.0515071	0.00468114	0.176696	0.0600108
chr7	127653150	127653250	3402401	0	+	0.33	(0.32,0.35]	chr7	318063	3	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000463020.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	45	2	1.88468	3.480485	5.07629	0.0515071	0.00468114	0.176696	0.0600108
chr17	81589304	81589404	6849114	0	-	0.55	(0.515,0.57]	chr17	678167	2	SS3_PROX	SS3_PROX:INTRON	NPLOC4	ENSG00000182446.14	ENST00000331134.11:ENST00000374747.9:ENST00000574897.5:ENST00000572351.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	66	2	1.3947	3.480435	5.56617	0.0429042	5.44229e-5	0.148082	0.00603408
chr1	52812343	52812442	104747	0	+	0.30303	(0.28,0.32]	chr1	13693	65	INTRON	INTRON	ZYG11B	ENSG00000162378.13	ENST00000294353.7:ENST00000545132.5	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	2.29724	3.480415	4.66359	0.0554156	0.0193496	0.18407	0.108861
chr1	113762226	113762324	525435	0	-	0.306122	(0.28,0.32]	chr1	61821	5	UTR3	UTR3:EXON_MRNA	RSBN1	ENSG00000081019.14	ENST00000261441.9:ENST00000612242.4	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	2.29724	3.480415	4.66359	0.0554156	0.0193496	0.18407	0.108861
chr10	21662350	21662450	4405704	0	+	0.3	(0.28,0.32]	chr10	406493	102	INTRON	INTRON	MLLT10	ENSG00000078403.17	ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000651298.1:ENST00000377059.7:ENST00000652258.1:ENST00000651382.1:ENST00000438473.6:ENST00000650921.1:ENST00000651405.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	35	2	2.29724	3.480415	4.66359	0.0554156	0.0193496	0.18407	0.108861
chr12	123614590	123614684	5243288	0	+	0.510638	(0.476,0.515]	chr12	498327	10	INTRON	INTRON	DDX55	ENSG00000111364.16	ENST00000542286.5:ENST00000238146.9:ENST00000544738.5:ENST00000538744.5:ENST00000354291.8:ENST00000539934.5:ENST00000541259.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	33	2	2.63168	3.480415	4.32915	0.0237106	0.0124637	0.118716	0.0973643
chr13	102612603	102612703	5532145	0	+	0.32	(0.28,0.32]	chr13	528637	47	INTRON	INTRON	TPP2	ENSG00000134900.12	ENST00000376052.5:ENST00000651448.1:ENST00000376065.8:ENST00000652308.1:ENST00000651544.1:ENST00000651748.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	35	2	2.29724	3.480415	4.66359	0.0554156	0.0193496	0.18407	0.108861
chr14	30931640	30931740	5856919	0	-	0.28	[0,0.28]	chr14	556466	3	SS5_PROX	SS5_PROX:INTRON	STRN3	ENSG00000196792.12	ENST00000355683.9:ENST00000357479.10:ENST00000555358.5:ENST00000366206.2:ENST00000556577.1:ENST00000554991.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	62	2	1.79953	3.480415	5.1613	0.0377477	0.00866441	0.156608	0.0787025
chr9	125187622	125187721	4352404	0	-	0.313131	(0.28,0.32]	chr9	399581	153	INTRON	INTRON	PPP6C	ENSG00000119414.12	ENST00000373547.9:ENST00000415905.5:ENST00000451402.5:ENST00000456642.1	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	2.29724	3.480415	4.66359	0.0554156	0.0193496	0.18407	0.108861
chr12	31971451	31971550	5106724	0	+	0.292929	(0.28,0.32]	chr12	482333	7	INTRON	INTRON	RESF1	ENSG00000174718.12	ENST00000541981.5:ENST00000540924.5:ENST00000312561.9:ENST00000535596.5:ENST00000397578.7:ENST00000381054.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	158	2	2.42893	3.4803949999999997	4.53186	0.00287039	6.85465e-6	0.0474836	0.00186176
chr1	241856257	241856355	344456	0	+	0.397959	(0.378,0.408]	chr1	40109	11	INTRON	INTRON	EXO1	ENSG00000174371.17	ENST00000366548.8:ENST00000423131.5:ENST00000348581.9:ENST00000518483.5:ENST00000437497.5:ENST00000493702.5:ENST00000469419.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	127	2	3.41888	3.480375	3.54187	1.00827e-4	9.09909e-5	0.00848955	0.00847812
chr13	95129598	95129698	5638136	0	-	0.21	[0,0.28]	chr13	537056	132	INTRON	INTRON	ABCC4	ENSG00000125257.16	ENST00000645237.2:ENST00000643051.1:ENST00000643842.1:ENST00000646439.1:ENST00000644880.1:ENST00000643816.1:ENST00000536256.3:ENST00000643556.1:ENST00000629385.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	52	2	2.20073	3.480185	4.75964	0.0235708	0.0232081	0.128907	0.118148
chr3	15837791	15837891	1624225	0	-	0.25	[0,0.28]	chr3	168034	231	INTRON	INTRON	ANKRD28	ENSG00000206560.12	ENST00000399451.6:ENST00000412318.5:ENST00000439830.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	52	2	2.20073	3.480185	4.75964	0.0235708	0.0232081	0.128907	0.118148
chr17	35569299	35569398	6599378	0	+	0.383838	(0.378,0.408]	chr17	642202	4	INTRON	INTRON	SNHG30	ENSG00000267321.4	ENST00000665667.2:ENST00000687979.1:ENST00000638682.1:ENST00000659685.1:ENST00000592381.1	lncRNA	lncRNA	lncRNA	lncRNA	2	42	2	1.89621	3.480165	5.06412	0.0488044	0.0030522	0.173377	0.0493883
chr6	42077744	42077843	2864956	0	+	0.40404	(0.378,0.408]	chr6	271002	3	UTR3	UTR3:EXON_MRNA:INTRON	TAF8	ENSG00000137413.17	ENST00000686935.1:ENST00000372982.8:ENST00000456846.6:ENST00000494547.5:ENST00000372977.8:ENST00000688562.1:ENST00000686229.1:ENST00000687601.1:ENST00000688007.1:ENST00000687266.1:ENST00000685500.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	42	2	1.89621	3.480165	5.06412	0.0488044	0.0030522	0.173377	0.0493883
chr6	15392837	15392936	2824416	0	+	0.454545	(0.44,0.476]	chr6	265198	182	INTRON	INTRON	JARID2	ENSG00000008083.14	ENST00000341776.7:ENST00000397311.4	protein_coding	protein_coding	protein_coding	protein_coding	2	47	2	2.42996	3.48015	4.53034	0.0104804	0.00672609	0.0855777	0.0738715
chr15	25410507	25410607	6121552	0	-	0.38	(0.378,0.408]	chr15	582909	9	INTRON	INTRON	UBE3A	ENSG00000114062.22	ENST00000648336.2:ENST00000438097.6:ENST00000635914.1:ENST00000638155.1:ENST00000637886.1:ENST00000638011.1:ENST00000649550.1:ENST00000650110.1:ENST00000630424.2:ENST00000566215.5:ENST00000428984.6:ENST00000675177.1:ENST00000675593.1:ENST00000625778.3:ENST00000675000.1:ENST00000626793.2:ENST00000628733.2:ENST00000630907.2:ENST00000675038.1:ENST00000629886.2:ENST00000628267.2:ENST00000629252.2:ENST00000625681.2:ENST00000626589.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	31	2	2.54849	3.48009	4.41169	0.0273196	0.0199606	0.136494	0.109608
chr15	75905129	75905216	6065670	0	+	0.402299	(0.378,0.408]	chr15	577626	1	SS3_PROX	SS3_PROX:INTRON	FBXO22	ENSG00000167196.14	ENST00000569749.5:ENST00000308275.8:ENST00000569022.1:ENST00000453211.6:ENST00000565131.5:ENST00000565036.5:ENST00000569054.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	31	2	2.54849	3.48009	4.41169	0.0273196	0.0199606	0.136494	0.109608
chr2	174232748	174232848	1270697	0	-	0.39	(0.378,0.408]	chr2	134298	29	INTRON	INTRON	OLA1	ENSG00000138430.16	ENST00000284719.8:ENST00000344357.9:ENST00000428402.6:ENST00000409546.5:ENST00000427472.2	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	2.54849	3.48009	4.41169	0.0273196	0.0199606	0.136494	0.109608
chr20	32857394	32857491	7257485	0	+	0.381443	(0.378,0.408]	chr20	737286	9	EXON_LNCRNA	EXON_LNCRNA	ENSG00000260257	ENSG00000260257.2	ENST00000569087.2	lncRNA	lncRNA	lncRNA	lncRNA	1	31	2	2.54849	3.48009	4.41169	0.0273196	0.0199606	0.136494	0.109608
chr3	17741492	17741589	1630423	0	-	0.391753	(0.378,0.408]	chr3	168279	7	INTRON	INTRON	TBC1D5	ENSG00000131374.15	ENST00000696125.1:ENST00000414318.2:ENST00000429383.8:ENST00000415814.6:ENST00000452492.6:ENST00000412981.5:ENST00000428355.5:ENST00000425944.5:ENST00000430169.5:ENST00000445294.5:ENST00000414349.5:ENST00000443499.6:ENST00000444756.5:ENST00000497531.5:ENST00000446863.5:ENST00000444471.5:ENST00000481396.5:ENST00000423331.6:ENST00000485432.1:ENST00000471679.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	31	2	2.54849	3.48009	4.41169	0.0273196	0.0199606	0.136494	0.109608
chr3	178781511	178781611	1875316	0	-	0.39	(0.378,0.408]	chr3	187500	240	INTRON	INTRON	KCNMB2-AS1	ENSG00000237978.6	ENST00000437488.5:ENST00000668466.1:ENST00000432385.5:ENST00000451742.5:ENST00000425330.1:ENST00000421498.1	lncRNA	lncRNA	lncRNA	lncRNA	1	31	2	2.54849	3.48009	4.41169	0.0273196	0.0199606	0.136494	0.109608
chr6	34798884	34798984	2848462	0	+	0.39	(0.378,0.408]	chr6	269121	62	INTRON	INTRON	UHRF1BP1	ENSG00000065060.18	ENST00000192788.6	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	2.54849	3.48009	4.41169	0.0273196	0.0199606	0.136494	0.109608
chr7	127653850	127653950	3402408	0	+	0.38	(0.378,0.408]	chr7	318063	10	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000463020.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	31	2	2.54849	3.48009	4.41169	0.0273196	0.0199606	0.136494	0.109608
chr9	112112587	112112670	4316149	0	-	0.39759	(0.378,0.408]	chr9	396953	4	SS5_PROX	SS5_PROX:INTRON	SUSD1	ENSG00000106868.17	ENST00000374270.8:ENST00000374263.7:ENST00000355396.7:ENST00000374264.6:ENST00000415074.1	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	2.54849	3.48009	4.41169	0.0273196	0.0199606	0.136494	0.109608
chr1	92261962	92262062	504989	0	-	0.38	(0.378,0.408]	chr1	59680	136	INTRON	INTRON	GLMN	ENSG00000174842.17	ENST00000370360.8:ENST00000495106.5:ENST00000495852.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	31	2	2.45932	3.47994	4.50056	0.0346754	0.015974	0.148144	0.101453
chr10	77896795	77896894	4654494	0	-	0.40404	(0.378,0.408]	chr10	428774	74	INTRON	INTRON	DLG5	ENSG00000151208.17	ENST00000372391.7	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	2.45932	3.47994	4.50056	0.0346754	0.015974	0.148144	0.101453
chr11	46527786	46527886	4946587	0	-	0.38	(0.378,0.408]	chr11	463481	146	INTRON	INTRON	AMBRA1	ENSG00000110497.15	ENST00000683756.1:ENST00000534300.5:ENST00000533727.5:ENST00000314845.7:ENST00000458649.6:ENST00000528950.1:ENST00000529558.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	31	2	2.45932	3.47994	4.50056	0.0346754	0.015974	0.148144	0.101453
chr14	60095612	60095712	5735411	0	+	0.38	(0.378,0.408]	chr14	544735	28	INTRON	INTRON	PCNX4	ENSG00000126773.13	ENST00000317623.8:ENST00000391611.6:ENST00000406854.6:ENST00000406949.5:ENST00000556907.1:ENST00000555569.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	31	2	2.45932	3.47994	4.50056	0.0346754	0.015974	0.148144	0.101453
chr15	92954836	92954922	6104260	0	+	0.383721	(0.378,0.408]	chr15	581480	1	INTRON	INTRON	CHD2	ENSG00000173575.22	ENST00000626874.2:ENST00000394196.9:ENST00000635856.1:ENST00000625990.3:ENST00000637572.1:ENST00000636881.1:ENST00000628181.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	31	2	2.45932	3.47994	4.50056	0.0346754	0.015974	0.148144	0.101453
chr19	28478471	28478570	7165879	0	-	0.40404	(0.378,0.408]	chr19	724189	102	INTRON	INTRON	ENSG00000283403:ENSG00000267243	ENSG00000283403.1:ENSG00000267243.6	ENST00000592347.5:ENST00000593065.5	lncRNA	lncRNA	lncRNA	lncRNA	1	31	2	2.45932	3.47994	4.50056	0.0346754	0.015974	0.148144	0.101453
chr2	216142117	216142216	1014685	0	+	0.393939	(0.378,0.408]	chr2	108007	4	INTRON	INTRON	XRCC5	ENSG00000079246.16	ENST00000392133.7:ENST00000392132.7:ENST00000460284.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	31	2	2.45932	3.47994	4.50056	0.0346754	0.015974	0.148144	0.101453
chr5	160110712	160110812	2759713	0	-	0.38	(0.378,0.408]	chr5	260442	17	INTRON	INTRON	PWWP2A	ENSG00000170234.13	ENST00000456329.7:ENST00000523662.1:ENST00000307063.9:ENST00000520662.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	31	2	2.45932	3.47994	4.50056	0.0346754	0.015974	0.148144	0.101453
chr20	38079402	38079502	7269342	0	+	0.46	(0.44,0.476]	chr20	738717	89	INTRON	INTRON	RPRD1B	ENSG00000101413.12	ENST00000462548.6:ENST00000373433.9:ENST00000449186.2:ENST00000618318.1:ENST00000614670.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	49	2	1.87325	3.47992	5.08659	0.0265709	0.00226401	0.134088	0.0425438
chr7	75359193	75359265	3337651	0	+	0.555556	(0.515,0.57]	chr7	310716	1	EXON_LNCRNA	EXON_LNCRNA	STAG3L1	ENSG00000205583.14	ENST00000619870.4:ENST00000687422.1:ENST00000684904.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	5	124	2	3.09808	3.4797599999999997	3.86144	1.21563e-4	4.63384e-6	0.00992813	0.00144728
chr17	32593902	32594002	6754242	0	-	0.39	(0.378,0.408]	chr17	663912	970	INTRON	INTRON	MYO1D	ENSG00000176658.17	ENST00000318217.10:ENST00000394649.8:ENST00000577352.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	70	2	1.33751	3.479405	5.6213	0.0677318	9.58854e-5	0.18426	0.00822887
chr9	37206635	37206735	4118523	0	+	0.48	(0.476,0.515]	chr9	375389	197	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000461038.5:ENST00000488607.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	67	2	3.33416	3.4794	3.62464	0.00230489	5.079e-4	0.0428247	0.0202328
chr7	135482489	135482589	3648685	0	-	0.48	(0.476,0.515]	chr7	339187	437	INTRON	INTRON	CNOT4	ENSG00000080802.20	ENST00000541284.6:ENST00000451834.5:ENST00000423368.6:ENST00000361528.8:ENST00000428680.6:ENST00000315544.6:ENST00000491203.5:ENST00000498534.5:ENST00000465721.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	67	2	3.37632	3.479375	3.58243	0.00195267	6.18479e-4	0.0400465	0.0223951
chr1	173482775	173482875	255569	0	+	0.32	(0.28,0.32]	chr1	30499	9	INTRON	INTRON	PRDX6	ENSG00000117592.9	ENST00000340385.6:ENST00000470017.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	260	2	2.65551	3.47935	4.30319	1.94722e-4	3.21993e-6	0.0122183	0.00128387
chr1	167952361	167952460	248646	0	+	0.464646	(0.44,0.476]	chr1	29542	1	INTRON	INTRON	DCAF6	ENSG00000143164.16	ENST00000450548.5:ENST00000470919.5:ENST00000432587.6:ENST00000367843.7:ENST00000470721.5:ENST00000367840.4:ENST00000312263.10:ENST00000455334.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	41	2	2.27304	3.47934	4.68564	0.0158915	0.00816201	0.109464	0.0766625
chr12	55982117	55982217	5144945	0	+	0.39	(0.378,0.408]	chr12	485924	8	INTRON	INTRON	RAB5B	ENSG00000111540.16	ENST00000553116.5:ENST00000549505.5:ENST00000360299.10:ENST00000546810.1:ENST00000548068.5:ENST00000549915.5:ENST00000448789.2:ENST00000551459.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	34	2	2.53503	3.47926	4.42349	0.0319942	0.00992961	0.13174	0.0877296
chr7	92703208	92703308	3571924	0	-	0.4	(0.378,0.408]	chr7	332798	15	INTRON	INTRON	CDK6	ENSG00000105810.10	ENST00000424848.3:ENST00000265734.8:ENST00000473078.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	34	2	2.53503	3.47926	4.42349	0.0319942	0.00992961	0.13174	0.0877296
chrX	98738776	98738876	7692355	0	+	0.4	(0.378,0.408]	chrX	787209	68	INTRON	INTRON	ENSG00000281566	ENSG00000281566.3	ENST00000649508.1:ENST00000626665.3:ENST00000627700.2	lncRNA	lncRNA	lncRNA	lncRNA	1	34	2	2.53503	3.47926	4.42349	0.0319942	0.00992961	0.13174	0.0877296
chrX	134402694	134402794	7723798	0	+	0.38	(0.378,0.408]	chrX	790119	57	INTRON	INTRON	PHF6	ENSG00000156531.18	ENST00000687496.1:ENST00000685553.1:ENST00000625464.2:ENST00000370803.8:ENST00000332070.7:ENST00000370799.5:ENST00000691812.1:ENST00000688598.1:ENST00000693759.1:ENST00000370800.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	34	2	2.53503	3.47926	4.42349	0.0319942	0.00992961	0.13174	0.0877296
chr11	65443343	65443443	4805976	0	+	0.38	(0.378,0.408]	chr11	446554	207	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	24	625	2	3.2484	3.4792300000000003	3.71006	1.78225e-7	4.71039e-8	2.07689e-4	8.91482e-5
chr17	50745389	50745466	6627246	0	+	0.337662	(0.32,0.35]	chr17	647236	2	SS3_PROX	SS3_PROX:INTRON	LUC7L3	ENSG00000108848.16	ENST00000393227.6:ENST00000505658.6:ENST00000240304.5:ENST00000508482.5:ENST00000504065.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	54	2	1.67393	3.479215	5.2845	0.0496128	0.00240071	0.174685	0.0440612
chr8	104578525	104578625	4014617	0	-	0.36	(0.35,0.378]	chr8	367439	462	INTRON	INTRON	LRP12	ENSG00000147650.12	ENST00000424843.6:ENST00000276654.10:ENST00000520770.1:ENST00000519675.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	99	2	2.98607	3.47911	3.97215	9.86191e-4	1.84105e-4	0.0288537	0.0123213
chr8	140529745	140529845	4075478	0	-	0.61	(0.57,1]	chr8	370170	97	UTR3	UTR3:EXON_MRNA	AGO2	ENSG00000123908.12	ENST00000220592.10	protein_coding	protein_coding	protein_coding	protein_coding	5	70	2	2.2837	3.4790900000000002	4.67448	0.00256797	2.78232e-7	0.0466761	2.87652e-4
chr15	90943941	90944031	6102507	0	+	0.344444	(0.32,0.35]	chr15	581236	5	INTRON	INTRON	UNC45A	ENSG00000140553.18	ENST00000672480.1:ENST00000394275.7:ENST00000639885.1:ENST00000418476.2:ENST00000556704.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	57	2	2.2643	3.47905	4.6938	0.0137794	0.00712852	0.0949306	0.0756118
chr11	93742429	93742523	4848503	0	+	0.531915	(0.515,0.57]	chr11	452223	3	SS3_PROX	SS3_PROX:SS5_PROX:INTRON	C11orf54	ENSG00000182919.15	ENST00000528288.5:ENST00000617482.4:ENST00000540113.5:ENST00000531516.1:ENST00000331239.8:ENST00000533585.5:ENST00000528099.5:ENST00000530620.5:ENST00000354421.8:ENST00000527003.5:ENST00000531650.5:ENST00000530279.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	51	2	1.79385	3.47899	5.16413	0.0201222	8.14815e-4	0.121243	0.0263656
chr11	989478	989575	4721741	0	+	0.43299	(0.408,0.44]	chr11	436705	4	INTRON	INTRON	AP2A2	ENSG00000183020.15	ENST00000332231.9:ENST00000448903.7:ENST00000529858.6:ENST00000693238.1:ENST00000687890.1:ENST00000687792.1:ENST00000528815.5:ENST00000528195.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	68	2	3.20034	3.4789450000000004	3.75755	0.00398025	2.62433e-4	0.0549214	0.0143317
chr6	32118362	32118450	3081403	0	-	0.465909	(0.44,0.476]	chr6	287821	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ATF6B	ENSG00000213676.13	ENST00000375201.8:ENST00000375203.8:ENST00000453203.2	protein_coding	protein_coding	protein_coding	protein_coding	2	41	2	1.93084	3.478935	5.02703	0.0443175	0.00278015	0.162302	0.0469265
chr6	157405154	157405254	3011782	0	+	0.46	(0.44,0.476]	chr6	281268	225	INTRON	INTRON	ZDHHC14	ENSG00000175048.17	ENST00000414563.6:ENST00000359775.10	protein_coding	protein_coding	protein_coding	protein_coding	2	41	2	1.93084	3.478935	5.02703	0.0443175	0.00278015	0.162302	0.0469265
chr17	78219556	78219655	6682225	0	+	0.565657	(0.515,0.57]	chr17	652756	24	INTRON	INTRON	BIRC5	ENSG00000089685.15	ENST00000301633.8:ENST00000350051.8:ENST00000590925.6:ENST00000374948.6:ENST00000592734.5:ENST00000592115.5:ENST00000586192.5:ENST00000587746.5:ENST00000591800.1:ENST00000589892.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	51	2	1.62814	3.4788550000000003	5.32957	0.035203	4.06834e-4	0.150193	0.0185763
chr7	105118720	105118820	3601176	0	-	0.51	(0.476,0.515]	chr7	336054	3	INTRON	INTRON	SRPK2	ENSG00000135250.17	ENST00000465072.5:ENST00000393651.8:ENST00000357311.7:ENST00000466917.1:ENST00000485455.1:ENST00000477925.5:ENST00000489828.5:ENST00000474770.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	68	2	3.10264	3.478745	3.85485	0.00543163	1.63076e-4	0.0645052	0.0109774
chr12	111997358	111997458	5414405	0	-	0.41	(0.408,0.44]	chr12	517089	51	INTRON	INTRON	TMEM116	ENSG00000198270.13	ENST00000550831.7:ENST00000552374.7:ENST00000355445.7:ENST00000547878.6:ENST00000549537.6:ENST00000552801.6:ENST00000548283.6:ENST00000550800.6:ENST00000550037.5:ENST00000551297.6:ENST00000550020.6:ENST00000546537.6:ENST00000549425.5:ENST00000552839.6:ENST00000546962.5:ENST00000550233.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	50	2	2.13157	3.478435	4.8253	0.0109031	0.0056738	0.0923273	0.0653997
chr19	17298677	17298777	7029750	0	+	0.36	(0.35,0.378]	chr19	699953	3	SS5_PROX	SS5_PROX:INTRON	MRPL34	ENSG00000130312.7	ENST00000595444.1:ENST00000600434.5	protein_coding	protein_coding	protein_coding	protein_coding	3	59	2	1.99351	3.478405	4.9633	0.020841	0.00198929	0.111648	0.0411469
chr10	124780564	124780664	4712434	0	-	0.38	(0.378,0.408]	chr10	434817	54	INTRON	INTRON	EEF1AKMT2	ENSG00000203791.15	ENST00000652548.1:ENST00000466270.5:ENST00000368836.7:ENST00000464099.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	50	2	1.78011	3.4781899999999997	5.17627	0.0356367	0.00208234	0.151629	0.0411801
chr15	84792380	84792480	6088763	0	+	0.33	(0.32,0.35]	chr15	579461	11	INTRON	INTRON	ZNF592	ENSG00000166716.10	ENST00000560079.7:ENST00000559607.1:ENST00000299927.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	50	2	2.09005	3.478135	4.86622	0.0330483	0.00354075	0.133816	0.0546236
chr20	37221198	37221297	7266561	0	+	0.515152	(0.476,0.515]	chr20	738439	70	INTRON	INTRON	RPN2	ENSG00000118705.17	ENST00000373622.9:ENST00000237530.11	protein_coding	protein_coding	protein_coding	protein_coding	2	67	2	3.41728	3.478115	3.53895	0.00165726	0.00075485700000000005	0.0369207	0.0251966
chr1	193153186	193153284	284931	0	+	0.214286	[0,0.28]	chr1	32809	1	INTRON	INTRON	CDC73	ENSG00000134371.14	ENST00000649895.1:ENST00000643006.1:ENST00000367435.5:ENST00000650197.1:ENST00000648071.1:ENST00000635846.1:ENST00000649606.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	51	2	1.95356	3.4780949999999997	5.00263	0.0463152	0.013055	0.166231	0.093385
chr1	205630038	205630137	623487	0	-	0.252525	[0,0.28]	chr1	74156	45	INTRON	INTRON	ELK4	ENSG00000158711.14	ENST00000616704.4:ENST00000357992.9:ENST00000289703.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	51	2	1.95356	3.4780949999999997	5.00263	0.0463152	0.013055	0.166231	0.093385
chr4	67635268	67635352	2153787	0	-	0.238095	[0,0.28]	chr4	212092	4	SS5_PROX	SS5_PROX:INTRON	UBA6	ENSG00000033178.13	ENST00000322244.10:ENST00000505673.2	protein_coding	protein_coding	protein_coding	protein_coding	2	51	2	1.95356	3.4780949999999997	5.00263	0.0463152	0.013055	0.166231	0.093385
chr4	68699	68798	1905445	0	+	0.222222	[0,0.28]	chr4	191008	3	INTRON	INTRON	ZNF595	ENSG00000272602.6	ENST00000608255.2:ENST00000609518.5:ENST00000610261.6	protein_coding	protein_coding	protein_coding	protein_coding	2	51	2	1.8986	3.47804	5.05748	0.0531512	0.0113653	0.179787	0.0886611
chr7	119812665	119812765	3629467	0	-	0.24	[0,0.28]	chr7	337335	114	INTRON	INTRON	LINC02476	ENSG00000225546.6	ENST00000660268.1:ENST00000431071.5:ENST00000426413.2	lncRNA	lncRNA	lncRNA	lncRNA	2	51	2	1.8986	3.47804	5.05748	0.0531512	0.0113653	0.179787	0.0886611
chr16	89524943	89525041	6420512	0	+	0.459184	(0.44,0.476]	chr16	616225	3	INTRON	INTRON	SPG7	ENSG00000197912.16	ENST00000647079.1:ENST00000646303.1:ENST00000643649.1:ENST00000643307.1:ENST00000566371.6:ENST00000644498.1:ENST00000645897.1:ENST00000643668.1:ENST00000644225.1:ENST00000645818.2:ENST00000645977.1:ENST00000645063.1:ENST00000646263.1:ENST00000643724.1:ENST00000644781.1:ENST00000644901.1:ENST00000645042.1:ENST00000646531.1:ENST00000646930.1:ENST00000642436.1:ENST00000644210.1:ENST00000564047.2:ENST00000646589.1:ENST00000268704.7:ENST00000646826.1:ENST00000646716.1:ENST00000643345.1:ENST00000341316.6:ENST00000645533.1:ENST00000646958.1:ENST00000642371.1:ENST00000643105.1:ENST00000645354.1:ENST00000643957.1:ENST00000642334.1:ENST00000647227.1:ENST00000562775.2:ENST00000646445.1:ENST00000564409.2:ENST00000643954.1:ENST00000646399.1:ENST00000644671.1:ENST00000643178.1:ENST00000644748.1:ENST00000643496.1:ENST00000647032.1:ENST00000644751.1:ENST00000642427.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	44	2	1.77101	3.4779099999999996	5.18481	0.0693975	6.21872e-4	0.184298	0.0223951
chr3	194466789	194466888	1890998	0	-	0.323232	(0.32,0.35]	chr3	189242	42	INTRON	INTRON	ATP13A3	ENSG00000133657.17	ENST00000687055.1:ENST00000645538.1:ENST00000645319.2:ENST00000439040.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	47	2	2.49929	3.4777899999999997	4.45629	0.0246089	0.00776612	0.12011	0.0787356
chr11	46745876	46745976	4947705	0	-	0.47	(0.44,0.476]	chr11	463626	9	INTRON	INTRON	CKAP5	ENSG00000175216.15	ENST00000529230.6:ENST00000312055.9:ENST00000354558.7:ENST00000533413.5:ENST00000525896.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	49	2	1.92837	3.4777	5.02703	0.0222222	0.00278015	0.124303	0.0469265
chr3	100311632	100311732	1466092	0	+	0.33	(0.32,0.35]	chr3	153670	4	SS3_PROX	SS3_PROX:INTRON	TBC1D23	ENSG00000036054.13	ENST00000394144.9:ENST00000344949.9:ENST00000486274.5:ENST00000475134.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	49	2	1.77704	3.4776299999999996	5.17822	0.0719969	0.00115625	0.187322	0.0313436
chr2	131296742	131296842	866352	0	+	0.34	(0.32,0.35]	chr2	97306	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	PLEKHB2:FAR2P4	ENSG00000115762.17:ENSG00000231431.7	ENST00000404460.5:ENST00000560285.5	protein_coding	protein_coding	protein_coding:transcribed_unprocessed_pseudogene	protein_coding:processed_transcript	2	49	2	1.83416	3.477575	5.12099	0.0631198	0.00143632	0.176946	0.0347139
chr20	35407349	35407449	7335163	0	-	0.52	(0.515,0.57]	chr20	747197	128	INTRON	INTRON	UQCC1	ENSG00000101019.22	ENST00000374380.6:ENST00000374394.7:ENST00000374384.6:ENST00000359226.6:ENST00000349714.9:ENST00000457259.5:ENST00000374385.10:ENST00000453855.5:ENST00000424405.5:ENST00000443429.5:ENST00000438533.5:ENST00000397554.5:ENST00000491125.5:ENST00000491040.5:ENST00000397553.6:ENST00000495752.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	45	2	2.11724	3.47744	4.83764	0.0110335	0.00279527	0.0927187	0.0469265
chr1	88882270	88882370	499421	0	-	0.42	(0.408,0.44]	chr1	59244	178	INTRON	INTRON	GTF2B	ENSG00000137947.12	ENST00000370500.10:ENST00000448623.5:ENST00000494819.5:ENST00000418217.1:ENST00000486078.1:ENST00000471296.5:ENST00000471471.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	49	2	1.8749	3.4773650000000003	5.07983	0.0264246	0.00247652	0.133676	0.0446195
chr21	46393229	46393326	7421931	0	+	0.505155	(0.476,0.515]	chr21	756818	15	INTRON	INTRON	PCNT	ENSG00000160299.18	ENST00000695558.1:ENST00000359568.10:ENST00000480896.5	protein_coding	protein_coding	protein_coding	protein_coding	3	49	2	1.86014	3.4771849999999995	5.09423	0.0277606	0.00204588	0.137011	0.04086
chr8	130012114	130012213	4063890	0	-	0.343434	(0.32,0.35]	chr8	369848	33	INTRON	INTRON	CYRIB	ENSG00000153310.21	ENST00000694912.1:ENST00000523288.5:ENST00000519110.5:ENST00000401979.6:ENST00000523509.5:ENST00000517654.5:ENST00000518879.5:ENST00000522702.5:ENST00000521223.5:ENST00000518283.5:ENST00000523993.5:ENST00000519020.5:ENST00000518167.5:ENST00000522361.1:ENST00000523514.1:ENST00000518285.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	65	2	2.05666	3.47717	4.89768	0.00840213	0.00793135	0.0824581	0.076155
chr11	47504387	47504485	4949909	0	-	0.489796	(0.476,0.515]	chr11	464224	31	INTRON	INTRON	CELF1	ENSG00000149187.19	ENST00000310513.10:ENST00000687097.1:ENST00000531165.5:ENST00000532048.5:ENST00000530151.5:ENST00000525841.5:ENST00000528434.5:ENST00000543178.5:ENST00000526419.1:ENST00000528538.5:ENST00000526277.1	protein_coding	protein_coding	protein_coding	protein_coding	3	49	2	1.80284	3.477135	5.15143	0.033161	0.00166579	0.145899	0.0369207
chr17	27130506	27130606	6580130	0	+	0.47	(0.44,0.476]	chr17	639586	337	INTRON	INTRON	ENSG00000285822	ENSG00000285822.1	ENST00000649401.1	lncRNA	lncRNA	lncRNA	lncRNA	4	56	2	1.70242	3.477105	5.25179	0.0282713	0.00124521	0.137721	0.0322969
chr1	150855564	150855664	552777	0	-	0.27	[0,0.28]	chr1	65018	19	INTRON	INTRON	ARNT	ENSG00000143437.21	ENST00000358595.10:ENST00000471844.6:ENST00000354396.6:ENST00000515192.5:ENST00000505755.5:ENST00000497108.6:ENST00000505979.5:ENST00000504358.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	38	2	2.57033	3.4771	4.38387	0.0501911	0.0305273	0.156383	0.143385
chr2	175942479	175942579	1272599	0	-	0.24	[0,0.28]	chr2	134544	10	INTRON	INTRON	LNPK	ENSG00000144320.14	ENST00000272748.9:ENST00000544803.5:ENST00000409660.5:ENST00000431754.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	38	2	2.57033	3.4771	4.38387	0.0501911	0.0305273	0.156383	0.143385
chr3	43589252	43589351	1675113	0	-	0.252525	[0,0.28]	chr3	171020	84	INTRON	INTRON	ANO10	ENSG00000160746.13	ENST00000292246.8:ENST00000350459.8:ENST00000396091.7:ENST00000414522.6:ENST00000451430.6:ENST00000427171.5:ENST00000428472.5	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	2.57033	3.4771	4.38387	0.0501911	0.0305273	0.156383	0.143385
chr9	112320462	112320562	4317829	0	-	0.28	[0,0.28]	chr9	397079	222	INTRON	INTRON	PTBP3	ENSG00000119314.16	ENST00000334318.10:ENST00000458258.5:ENST00000374257.6:ENST00000374255.6:ENST00000343327.6:ENST00000487997.1:ENST00000210227.4:ENST00000450374.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	38	2	2.57033	3.4771	4.38387	0.0501911	0.0305273	0.156383	0.143385
chr2	86177540	86177640	1170987	0	-	0.46	(0.44,0.476]	chr2	124988	34	INTRON	INTRON	IMMT	ENSG00000132305.22	ENST00000449247.6:ENST00000254636.9:ENST00000410111.8:ENST00000442664.6:ENST00000409051.6:ENST00000474969.5:ENST00000409258.2:ENST00000486633.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	56	2	1.60176	3.4770149999999997	5.35227	0.0389597	8.47974e-4	0.160861	0.0267232
chr3	5218775	5218874	1354513	0	+	0.373737	(0.35,0.378]	chr3	142483	30	UTR3	UTR3:EXON_MRNA	EDEM1	ENSG00000134109.11	ENST00000256497.9	protein_coding	protein_coding	protein_coding	protein_coding	6	186	2	3.37195	3.47687	3.58179	2.42271e-4	1.71998e-6	0.014329100000000001	7.91759e-4
chr9	127789735	127789831	4202121	0	+	0.552083	(0.515,0.57]	chr9	383811	3	UTR3	UTR3:EXON_MRNA	CDK9	ENSG00000136807.14	ENST00000373264.5	protein_coding	protein_coding	protein_coding	protein_coding	6	118	2	2.4519	3.4768600000000003	4.50182	5.82494e-4	4.30039e-6	0.0219289	0.00151054
chr1	198710807	198710904	290068	0	+	0.319588	(0.28,0.32]	chr1	33293	6	INTRON	INTRON	PTPRC	ENSG00000081237.20	ENST00000348564.11:ENST00000530727.5:ENST00000442510.8:ENST00000367367.8:ENST00000529828.5	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay	2	47	2	2.0243	3.476795	4.92929	0.0364967	0.0098607	0.153759	0.0838128
chr12	76835670	76835770	5174583	0	+	0.31	(0.28,0.32]	chr12	490143	68	INTRON	INTRON	ZDHHC17	ENSG00000186908.15	ENST00000426126.7	protein_coding	protein_coding	protein_coding	protein_coding	2	47	2	2.0243	3.476795	4.92929	0.0364967	0.0098607	0.153759	0.0838128
chr3	9405345	9405444	1358961	0	+	0.282828	(0.28,0.32]	chr3	142655	70	INTRON	INTRON	SETD5	ENSG00000168137.20	ENST00000402198.7:ENST00000431285.5:ENST00000683012.1:ENST00000463180.5:ENST00000478475.5:ENST00000415650.5:ENST00000682536.1:ENST00000663774.1:ENST00000665872.1:ENST00000666307.1:ENST00000693430.1:ENST00000691925.1:ENST00000684606.1:ENST00000691175.1:ENST00000688835.1:ENST00000683262.1:ENST00000443339.5:ENST00000406341.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	47	2	2.0243	3.476795	4.92929	0.0364967	0.0098607	0.153759	0.0838128
chr1	29086907	29087007	60709	0	+	0.42	(0.408,0.44]	chr1	7763	24	INTRON	INTRON	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000373798.5:ENST00000649674.1:ENST00000343067.9:ENST00000349460.9:ENST00000646871.1:ENST00000488277.1:ENST00000490308.2:ENST00000650132.1:ENST00000649992.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	41	2	2.27464	3.4767900000000003	4.67894	0.0158016	0.0087648	0.109464	0.0788605
chr15	43038532	43038632	6160002	0	-	0.44	(0.408,0.44]	chr15	586499	3	SS3_PROX	SS3_PROX:INTRON	UBR1	ENSG00000159459.12	ENST00000290650.9:ENST00000546274.6	protein_coding	protein_coding	protein_coding	protein_coding	2	41	2	2.27464	3.4767900000000003	4.67894	0.0158016	0.0087648	0.109464	0.0788605
chr6	15395934	15396034	2824447	0	+	0.41	(0.408,0.44]	chr6	265198	213	INTRON	INTRON	JARID2	ENSG00000008083.14	ENST00000341776.7:ENST00000397311.4	protein_coding	protein_coding	protein_coding	protein_coding	2	41	2	2.27464	3.4767900000000003	4.67894	0.0158016	0.0087648	0.109464	0.0788605
chr1	214625663	214625762	313767	0	+	0.282828	(0.28,0.32]	chr1	36104	30	INTRON	INTRON	CENPF	ENSG00000117724.14	ENST00000366955.8	protein_coding	protein_coding	protein_coding	protein_coding	2	48	2	2.28998	3.476785	4.66359	0.0193496	0.0166401	0.110511	0.108861
chr1	78009284	78009383	148873	0	+	0.292929	(0.28,0.32]	chr1	16588	36	INTRON	INTRON	DNAJB4	ENSG00000162616.9	ENST00000487931.1:ENST00000477671.2:ENST00000484662.1:ENST00000426517.1:ENST00000476396.1:ENST00000370763.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	65	2	1.51776	3.47673	5.4357	0.0528371	0.00215368	0.178899	0.0417866
chr2	70292769	70292865	1152604	0	-	0.375	(0.35,0.378]	chr2	123148	2	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	SNRPG	ENSG00000143977.14	ENST00000272348.7:ENST00000429728.1:ENST00000482975.6:ENST00000438261.5:ENST00000454893.1:ENST00000413456.6:ENST00000449935.6:ENST00000480370.1:ENST00000488400.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	59	2	1.59505	3.4766649999999997	5.35828	0.040425	0.00135282	0.161534	0.0336321
chr5	139565403	139565503	2500544	0	+	0.44	(0.408,0.44]	chr5	239026	26	INTRON	INTRON	UBE2D2	ENSG00000131508.16	ENST00000511725.5:ENST00000505007.5:ENST00000398733.8:ENST00000510470.1:ENST00000398734.8:ENST00000505548.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	184	2	3.10759	3.47649	3.84539	1.50966e-5	1.27945e-5	0.00311444	0.00265999
chr14	69622343	69622443	5775817	0	+	0.58	(0.57,1]	chr14	547301	48	INTRON	INTRON	SUSD6	ENSG00000100647.8	ENST00000342745.5	protein_coding	protein_coding	protein_coding	protein_coding	1	21	2	2.78409	3.47645	4.16881	0.0116033	0.00574776	0.0889104	0.0681402
chr7	103103033	103103131	3592428	0	-	0.397959	(0.378,0.408]	chr7	335278	34	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NAPEPLD	ENSG00000161048.12	ENST00000341533.8:ENST00000465647.6:ENST00000414118.2:ENST00000417955.5:ENST00000422589.5:ENST00000420631.5:ENST00000427257.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	94	2	2.98311	3.47644	3.96977	0.0013103	9.19167e-5	0.0331539	0.00801007
chr10	87897200	87897300	4483269	0	+	0.51	(0.476,0.515]	chr10	412570	27	INTRON	INTRON	PTEN	ENSG00000171862.12	ENST00000688308.1:ENST00000693560.1:ENST00000371953.8:ENST00000688158.1:ENST00000686459.1:ENST00000688922.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	41	2	1.91817	3.476415	5.03466	0.0459211	0.00252065	0.164984	0.0446195
chr17	60264614	60264713	6804589	0	-	0.494949	(0.476,0.515]	chr17	672314	81	INTRON	INTRON	USP32	ENSG00000170832.13	ENST00000300896.9:ENST00000590133.5:ENST00000589335.5:ENST00000393003.7	protein_coding	protein_coding	protein_coding	protein_coding	2	41	2	1.91817	3.476415	5.03466	0.0459211	0.00252065	0.164984	0.0446195
chr17	59644495	59644595	6641810	0	+	0.31	(0.28,0.32]	chr17	648531	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	CLTC	ENSG00000141367.12	ENST00000621829.4:ENST00000393043.5:ENST00000269122.8:ENST00000580081.1:ENST00000579456.5:ENST00000584313.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	84	2	3.30263	3.476395	3.65016	0.0038504	6.39301e-4	0.0542786	0.0228666
chr1	35312871	35312971	68730	0	+	0.44	(0.408,0.44]	chr1	8723	165	INTRON	INTRON	ZMYM4	ENSG00000146463.12	ENST00000314607.11:ENST00000441447.1	protein_coding	protein_coding	protein_coding	protein_coding	2	41	2	1.93243	3.476355	5.02028	0.0441194	0.00303216	0.162255	0.0493883
chr1	93351426	93351525	164252	0	+	0.414141	(0.408,0.44]	chr1	17840	42	INTRON	INTRON	DR1	ENSG00000117505.13	ENST00000370272.9:ENST00000370267.1	protein_coding	protein_coding	protein_coding	protein_coding	2	41	2	1.93243	3.476355	5.02028	0.0441194	0.00303216	0.162255	0.0493883
chr10	18646804	18646903	4570668	0	-	0.414141	(0.408,0.44]	chr10	421525	39	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7:ENST00000606425.2	protein_coding	protein_coding	protein_coding	protein_coding	2	41	2	1.93243	3.476355	5.02028	0.0441194	0.00303216	0.162255	0.0493883
chr5	134911165	134911265	2491774	0	+	0.44	(0.408,0.44]	chr5	238088	3	INTRON	INTRON	PCBD2	ENSG00000132570.15	ENST00000512783.5:ENST00000254908.11:ENST00000504352.1:ENST00000510013.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	41	2	1.93243	3.476355	5.02028	0.0441194	0.00303216	0.162255	0.0493883
chrX	129581146	129581246	7721851	0	+	0.41	(0.408,0.44]	chrX	789793	42	INTRON	INTRON	OCRL	ENSG00000122126.18	ENST00000371113.9:ENST00000357121.5:ENST00000693473.1:ENST00000646010.1:ENST00000647245.1:ENST00000646914.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	41	2	1.93243	3.476355	5.02028	0.0441194	0.00303216	0.162255	0.0493883
chr10	21609830	21609930	4405175	0	+	0.36	(0.35,0.378]	chr10	406466	140	INTRON	INTRON	MLLT10	ENSG00000078403.17	ENST00000651097.1:ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000650772.1:ENST00000651298.1:ENST00000495130.5:ENST00000377059.7:ENST00000652258.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	33	2	2.86451	3.476335	4.08816	0.046021	0.0109111	0.149888	0.0923273
chr11	66055670	66055755	4807701	0	+	0.364706	(0.35,0.378]	chr11	447251	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	SF3B2	ENSG00000087365.16	ENST00000528302.5:ENST00000322535.11:ENST00000533595.5:ENST00000524627.5:ENST00000530322.5:ENST00000526653.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	33	2	2.86451	3.476335	4.08816	0.046021	0.0109111	0.149888	0.0923273
chr17	4337605	4337704	6712074	0	-	0.373737	(0.35,0.378]	chr17	657730	19	INTRON	INTRON	UBE2G1	ENSG00000132388.13	ENST00000396981.7:ENST00000572484.5:ENST00000574633.5:ENST00000571980.1:ENST00000574059.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	33	2	2.86451	3.476335	4.08816	0.046021	0.0109111	0.149888	0.0923273
chr2	197399270	197399364	1306640	0	-	0.361702	(0.35,0.378]	chr2	136654	3	INTRON	INTRON	SF3B1	ENSG00000115524.17	ENST00000652026.1:ENST00000652738.1:ENST00000335508.11:ENST00000470268.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	33	2	2.86451	3.476335	4.08816	0.046021	0.0109111	0.149888	0.0923273
chr6	43206810	43206910	2870151	0	+	0.36	(0.35,0.378]	chr6	271953	3	SS5_PROX	SS5_PROX:INTRON	CUL9	ENSG00000112659.14	ENST00000515773.5:ENST00000372647.6:ENST00000252050.9:ENST00000504485.5:ENST00000502719.5:ENST00000505172.5:ENST00000502937.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	47	2	1.98929	3.4762950000000004	4.9633	0.0417909	0.00198929	0.147075	0.0411469
chr12	51081496	51081596	5325030	0	-	0.34	(0.32,0.35]	chr12	507787	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	CSRNP2	ENSG00000110925.7	ENST00000228515.6:ENST00000548206.1:ENST00000548981.5:ENST00000552899.5:ENST00000546935.5:ENST00000552680.1:ENST00000550461.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	34	2	2.78073	3.47627	4.17181	0.04531	0.01481	0.149888	0.106702
chr3	196395202	196395301	1899287	0	-	0.323232	(0.32,0.35]	chr3	190198	12	INTRON	INTRON	UBXN7	ENSG00000163960.12	ENST00000296328.9:ENST00000429160.1:ENST00000428095.1:ENST00000381887.7:ENST00000413584.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	34	2	2.78073	3.47627	4.17181	0.04531	0.01481	0.149888	0.106702
chr4	38925670	38925769	1949558	0	+	0.333333	(0.32,0.35]	chr4	195151	24	INTRON	INTRON	FAM114A1	ENSG00000197712.12	ENST00000515037.5:ENST00000358869.5:ENST00000512889.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	34	2	2.78073	3.47627	4.17181	0.04531	0.01481	0.149888	0.106702
chr6	147204882	147204982	2988712	0	+	0.39	(0.378,0.408]	chr6	279994	2	SS5_PROX	SS5_PROX:INTRON	STXBP5	ENSG00000164506.15	ENST00000321680.11:ENST00000367481.7:ENST00000546097.5:ENST00000367480.7	protein_coding	protein_coding	protein_coding	protein_coding	7	190	2	3.02338	3.47616	3.92894	2.39838e-5	1.06764e-5	0.00383194	0.00256986
chr1	52390893	52390991	456931	0	-	0.265306	[0,0.28]	chr1	54887	12	INTRON	INTRON	ORC1	ENSG00000085840.13	ENST00000371568.8:ENST00000371566.1	protein_coding	protein_coding	protein_coding	protein_coding	2	51	2	2.00649	3.47605	4.94561	0.040391	0.0150263	0.161534	0.0994339
chr4	67673396	67673496	2154183	0	-	0.27	[0,0.28]	chr4	212164	3	SS5_PROX	SS5_PROX:INTRON	UBA6	ENSG00000033178.13	ENST00000322244.10:ENST00000420827.2:ENST00000429659.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	51	2	2.00649	3.47605	4.94561	0.040391	0.0150263	0.161534	0.0994339
chr3	100742055	100742155	1468271	0	+	0.27	[0,0.28]	chr3	153885	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	TFG	ENSG00000114354.15	ENST00000675047.1:ENST00000490574.6:ENST00000675543.1:ENST00000676308.1:ENST00000675499.1:ENST00000674699.1:ENST00000418917.7:ENST00000675553.1:ENST00000620299.5:ENST00000675246.1:ENST00000675692.1:ENST00000676276.1:ENST00000676054.1:ENST00000675890.1:ENST00000675011.1:ENST00000675586.1:ENST00000674645.1:ENST00000675958.1:ENST00000674798.1:ENST00000676010.1:ENST00000675591.1:ENST00000675420.1:ENST00000674615.1:ENST00000676431.1:ENST00000674758.1:ENST00000240851.9:ENST00000675243.1:ENST00000676111.1:ENST00000476228.5:ENST00000463568.6:ENST00000676395.1:ENST00000487505.6:ENST00000615993.2:ENST00000676455.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	53	2	2.33097	3.475905	4.62084	0.0313633	0.0158969	0.13151	0.109464
chr4	143899978	143900077	2251438	0	-	0.292929	(0.28,0.32]	chr4	219936	191	INTRON	INTRON	GYPE	ENSG00000197465.14	ENST00000358615.9:ENST00000506264.5:ENST00000437468.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	37	2	2.91832	3.475885	4.03345	0.0704058	0.0102484	0.184298	0.089002
chr6	132797621	132797718	3222820	0	-	0.28866000000000003	(0.28,0.32]	chr6	299657	1	INTRON	INTRON	SLC18B1	ENSG00000146409.12	ENST00000275227.9:ENST00000647932.1:ENST00000650278.1:ENST00000650136.1:ENST00000650298.1:ENST00000367918.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	37	2	2.91832	3.475885	4.03345	0.0704058	0.0102484	0.184298	0.089002
chr1	201961426	201961524	292401	0	+	0.469388	(0.44,0.476]	chr1	33667	35	INTRON	INTRON	TIMM17A	ENSG00000134375.11	ENST00000367287.5:ENST00000478378.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	91	2	2.94321	3.47583	4.00845	0.00111162	1.1799e-4	0.0305384	0.00984015
chr10	86757419	86757518	4479405	0	+	0.535354	(0.515,0.57]	chr10	412292	1	INTRON	INTRON	BMPR1A	ENSG00000107779.14	ENST00000638429.1:ENST00000372037.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	28	2	2.74772	3.475765	4.20381	0.0189208	0.0142192	0.108861	0.103638
chr2	61451481	61451580	1130361	0	-	0.535354	(0.515,0.57]	chr2	121499	303	INTRON	INTRON	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000453133.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	28	2	2.74772	3.475765	4.20381	0.0189208	0.0142192	0.108861	0.103638
chrX	77926814	77926911	7685196	0	+	0.536082	(0.515,0.57]	chrX	786839	23	INTRON	INTRON	ENSG00000248503:ATP7A:PGK1	ENSG00000248503.3:ENSG00000165240.22:ENSG00000102144.15	ENST00000686088.1:ENST00000693051.1:ENST00000341514.11:ENST00000688746.1:ENST00000688338.1:ENST00000685264.1:ENST00000686515.1:ENST00000687086.1:ENST00000689530.1:ENST00000686999.1:ENST00000644362.1:ENST00000343533.10:ENST00000686543.1:ENST00000686033.1:ENST00000692908.1:ENST00000686688.1:ENST00000686480.1:ENST00000689649.1:ENST00000686416.1:ENST00000682742.2:ENST00000685434.1:ENST00000693387.1:ENST00000688249.1:ENST00000689891.1:ENST00000691152.1:ENST00000688889.1:ENST00000687984.1:ENST00000685208.1:ENST00000687599.1:ENST00000685885.1:ENST00000687082.1:ENST00000693167.1:ENST00000692729.1:ENST00000645454.1:ENST00000686896.1:ENST00000689731.1:ENST00000684798.1:ENST00000686560.1:ENST00000686464.1:ENST00000686050.1:ENST00000602791.2:ENST00000686133.1:ENST00000645094.1:ENST00000689541.1:ENST00000642651.1:ENST00000693398.1:ENST00000688165.1:ENST00000692110.1:ENST00000687325.1:ENST00000689767.1:ENST00000687628.1:ENST00000691456.1	protein_coding	protein_coding	protein_coding:transcribed_processed_pseudogene	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	28	2	2.74772	3.475765	4.20381	0.0189208	0.0142192	0.108861	0.103638
chr21	43876044	43876144	7413898	0	+	0.35	(0.32,0.35]	chr21	755688	83	INTRON	INTRON	AGPAT3	ENSG00000160216.21	ENST00000291572.13:ENST00000448287.5	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	2.23182	3.4757599999999997	4.7197	0.068598	0.00568521	0.184298	0.0678837
chr6	136636724	136636824	3234069	0	-	0.35	(0.32,0.35]	chr6	300622	134	INTRON	INTRON	MAP3K5	ENSG00000197442.10	ENST00000359015.5	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	2.23182	3.4757599999999997	4.7197	0.068598	0.00568521	0.184298	0.0678837
chr6	158001341	158001441	3017206	0	+	0.35	(0.32,0.35]	chr6	281468	189	INTRON	INTRON	SYNJ2	ENSG00000078269.15	ENST00000355585.9:ENST00000640338.1:ENST00000367113.5	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	2.23182	3.4757599999999997	4.7197	0.068598	0.00568521	0.184298	0.0678837
chr7	17851962	17852061	3495663	0	-	0.343434	(0.32,0.35]	chr7	326448	6	INTRON	INTRON	SNX13	ENSG00000071189.21	ENST00000428135.7:ENST00000611725.4:ENST00000409076.6:ENST00000444712.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	36	2	2.23182	3.4757599999999997	4.7197	0.068598	0.00568521	0.184298	0.0678837
chr7	135973428	135973528	3649433	0	-	0.35	(0.32,0.35]	chr7	339214	214	INTRON	INTRON	MTPN	ENSG00000105887.11	ENST00000393085.4:ENST00000435723.1	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	2.23182	3.4757599999999997	4.7197	0.068598	0.00568521	0.184298	0.0678837
chr9	68273823	68273921	4133783	0	+	0.479592	(0.476,0.515]	chr9	376822	9	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	CBWD3	ENSG00000196873.16	ENST00000618921.4:ENST00000618217.4:ENST00000377342.9:ENST00000621474.4:ENST00000621396.4:ENST00000615061.4:ENST00000360171.11:ENST00000612050.4:ENST00000622755.4:ENST00000377344.6:ENST00000614398.4:ENST00000622817.4:ENST00000619322.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	67	2	3.24596	3.475745	3.70553	0.00322919	3.44823e-4	0.0507087	0.0165103
chr3	138805450	138805550	1831207	0	-	0.51	(0.476,0.515]	chr3	184062	85	INTRON	INTRON	PIK3CB	ENSG00000051382.9	ENST00000674063.1:ENST00000477593.5:ENST00000462898.5:ENST00000483968.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	67	2	3.45711	3.47561	3.49411	0.00140905	9.23453e-4	0.0340865	0.0278392
chr15	28278378	28278477	6123623	0	-	0.262626	[0,0.28]	chr15	583381	30	INTRON	INTRON	HERC2	ENSG00000128731.18	ENST00000261609.13:ENST00000564734.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	97	2	3.3753	3.47558	3.57586	0.00242466	0.00187793	0.0454587	0.039073
chr6	147220058	147220158	2988864	0	+	0.2	[0,0.28]	chr6	280001	136	INTRON	INTRON	STXBP5	ENSG00000164506.15	ENST00000321680.11:ENST00000367481.7:ENST00000546097.5:ENST00000367480.7	protein_coding	protein_coding	protein_coding	protein_coding	3	72	2	1.85833	3.4755700000000003	5.09281	0.0378973	0.00372534	0.141283	0.0561984
chr17	81251035	81251115	6847653	0	-	0.6	(0.57,1]	chr17	677874	3	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	SLC38A10	ENSG00000157637.13	ENST00000374759.8:ENST00000540966.5:ENST00000576151.1:ENST00000542075.5:ENST00000573058.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	28	2	2.50742	3.4755400000000005	4.44366	0.00631173	0.00210922	0.0687526	0.0425419
chr19	17306379	17306471	7029830	0	+	0.663043	(0.57,1]	chr19	699968	1	UTR3	UTR3:EXON_MRNA	MRPL34	ENSG00000130312.7	ENST00000595444.1:ENST00000600434.5:ENST00000594999.1:ENST00000252602.2:ENST00000602206.1	protein_coding	protein_coding	protein_coding	protein_coding	2	28	2	2.50742	3.4755400000000005	4.44366	0.00631173	0.00210922	0.0687526	0.0425419
chr9	137559290	137559389	4377420	0	-	0.575758	(0.57,1]	chr9	403627	21	INTRON	INTRON	DPH7	ENSG00000148399.13	ENST00000277540.7:ENST00000479650.5:ENST00000467243.5:ENST00000497237.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	28	2	2.50742	3.4755400000000005	4.44366	0.00631173	0.00210922	0.0687526	0.0425419
chr12	4284874	4284974	5067521	0	+	0.52	(0.515,0.57]	chr12	478288	2	SS3_PROX	SS3_PROX:INTRON	CCND2	ENSG00000118971.9	ENST00000676411.1:ENST00000676279.1:ENST00000261254.8:ENST00000675880.1:ENST00000536537.2:ENST00000675468.1:ENST00000536795.1:ENST00000541542.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	37	2	2.1885	3.4754699999999996	4.76244	0.0202537	0.00362147	0.121364	0.0533855
chr16	3845704	3845804	6435736	0	-	0.53	(0.515,0.57]	chr16	619576	323	INTRON	INTRON	CREBBP	ENSG00000005339.15	ENST00000262367.10:ENST00000382070.7:ENST00000636895.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	37	2	2.1885	3.4754699999999996	4.76244	0.0202537	0.00362147	0.121364	0.0533855
chr3	8932776	8932875	1610343	0	-	0.525253	(0.515,0.57]	chr3	166168	187	INTRON	INTRON	RAD18	ENSG00000070950.10	ENST00000264926.7:ENST00000415439.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	37	2	2.1885	3.4754699999999996	4.76244	0.0202537	0.00362147	0.121364	0.0533855
chr7	64546423	64546523	3537154	0	-	0.53	(0.515,0.57]	chr7	329913	16	INTRON	INTRON	ZNF680	ENSG00000173041.12	ENST00000309683.11:ENST00000476563.1:ENST00000447137.2:ENST00000473601.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	37	2	2.1885	3.4754699999999996	4.76244	0.0202537	0.00362147	0.121364	0.0533855
chr7	11075045	11075145	3283623	0	+	0.47	(0.44,0.476]	chr7	304989	121	INTRON	INTRON	PHF14	ENSG00000106443.17	ENST00000642461.1:ENST00000634607.2:ENST00000403050.7:ENST00000521747.5:ENST00000423760.6:ENST00000481418.5:ENST00000470665.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	36	2	2.97451	3.475385	3.97626	0.0300538	0.00853825	0.142135	0.0780043
chr1	1742371	1742469	361404	0	-	0.428571	(0.408,0.44]	chr1	42138	23	INTRON	INTRON	SLC35E2A	ENSG00000215790.8	ENST00000647043.1:ENST00000246421.4	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	1	33	2	2.51492	3.4753600000000002	4.4358	0.0329839	0.00893097	0.133816	0.0849778
chr16	7951548	7951648	6440023	0	-	0.42	(0.408,0.44]	chr16	620339	568	INTRON	INTRON	ENSG00000260289	ENSG00000260289.2	ENST00000670665.1:ENST00000654046.1:ENST00000567103.2	lncRNA	lncRNA	lncRNA	lncRNA	1	33	2	2.51492	3.4753600000000002	4.4358	0.0329839	0.00893097	0.133816	0.0849778
chr2	24815756	24815846	712318	0	+	0.411111	(0.408,0.44]	chr2	82378	1	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	CENPO	ENSG00000138092.11	ENST00000473706.5:ENST00000491031.5:ENST00000380834.7:ENST00000260662.2:ENST00000498362.1:ENST00000464156.5:ENST00000395845.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	33	2	2.51492	3.4753600000000002	4.4358	0.0329839	0.00893097	0.133816	0.0849778
chr22	31429079	31429179	7503312	0	+	0.44	(0.408,0.44]	chr22	765635	15	INTRON	INTRON	DRG1	ENSG00000185721.13	ENST00000331457.9:ENST00000469673.1:ENST00000548143.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	33	2	2.51492	3.4753600000000002	4.4358	0.0329839	0.00893097	0.133816	0.0849778
chr3	47643961	47644060	1683669	0	-	0.434343	(0.408,0.44]	chr3	171996	48	INTRON	INTRON	SMARCC1	ENSG00000173473.11	ENST00000254480.10:ENST00000425518.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	33	2	2.51492	3.4753600000000002	4.4358	0.0329839	0.00893097	0.133816	0.0849778
chr9	137679201	137679301	4224086	0	+	0.44	(0.408,0.44]	chr9	388198	23	INTRON	INTRON	EHMT1	ENSG00000181090.21	ENST00000462484.5:ENST00000371394.6:ENST00000630754.2:ENST00000460843.6:ENST00000626216.2:ENST00000629335.2:ENST00000637335.1:ENST00000636376.1:ENST00000637655.1:ENST00000636027.1:ENST00000492232.5:ENST00000460486.3:ENST00000636081.1:ENST00000637161.1:ENST00000629417.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	33	2	2.51492	3.4753600000000002	4.4358	0.0329839	0.00893097	0.133816	0.0849778
chr7	27630671	27630768	3510618	0	-	0.360825	(0.35,0.378]	chr7	327336	8	INTRON	INTRON	HIBADH	ENSG00000106049.9	ENST00000265395.7:ENST00000428288.2:ENST00000425715.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	119	2	2.69	3.47527	4.26054	0.00107271	4.43007e-5	0.0300133	0.00571886
chr16	85647554	85647653	6416314	0	+	0.585859	(0.57,1]	chr16	615487	131	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000635906.1:ENST00000405402.6:ENST00000411612.5:ENST00000253458.12:ENST00000393243.5	protein_coding	protein_coding	protein_coding	protein_coding	3	33	2	1.67986	3.475265	5.27067	0.0496395	5.68536e-5	0.174685	0.00655354
chr2	208286333	208286433	992206	0	+	0.28	[0,0.28]	chr2	106623	4	SS5_PROX	SS5_PROX:INTRON	PIKFYVE	ENSG00000115020.17	ENST00000264380.9:ENST00000443896.5:ENST00000392202.7:ENST00000407449.5:ENST00000308862.10:ENST00000452564.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	64	2	2.06426	3.475255	4.88625	0.0173315	0.0168952	0.110899	0.104099
chr16	21843185	21843285	6461655	0	-	0.33	(0.32,0.35]	chr16	623409	4	SS5_PROX	SS5_PROX:INTRON	NPIPB4	ENSG00000185864.18	ENST00000415645.6:ENST00000682606.1:ENST00000165086.8:ENST00000542133.5:ENST00000543660.1:ENST00000541329.1:ENST00000614197.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	49	2	1.88909	3.4752400000000003	5.06139	0.0553737	0.00179023	0.165463	0.0392749
chr1	40211695	40211795	80472	0	+	0.56	(0.515,0.57]	chr1	10431	87	INTRON	INTRON	RLF	ENSG00000117000.9	ENST00000372771.5	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	2.35125	3.4751950000000003	4.59914	0.0436431	0.00616166	0.162255	0.0676501
chr1	174020696	174020796	588029	0	-	0.52	(0.515,0.57]	chr1	70766	46	INTRON	INTRON	RC3H1	ENSG00000135870.12	ENST00000367696.7	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	2.35125	3.4751950000000003	4.59914	0.0436431	0.00616166	0.162255	0.0676501
chr11	96317685	96317785	5024113	0	-	0.52	(0.515,0.57]	chr11	473809	2238	INTRON	INTRON	MAML2	ENSG00000184384.14	ENST00000524717.6	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	2.35125	3.4751950000000003	4.59914	0.0436431	0.00616166	0.162255	0.0676501
chr19	6416063	6416130	7128629	0	-	0.537313	(0.515,0.57]	chr19	717703	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:PRIMIRNA:INTRON	KHSRP:MIR3940	ENSG00000088247.19:ENSG00000284159.1	ENST00000600480.2:ENST00000398148.7:ENST00000595223.5:ENST00000579148.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:primary_miRNA	1	28	2	2.35125	3.4751950000000003	4.59914	0.0436431	0.00616166	0.162255	0.0676501
chr19	18518920	18519020	7152983	0	-	0.55	(0.515,0.57]	chr19	722886	431	INTRON	INTRON	ELL	ENSG00000105656.13	ENST00000262809.9:ENST00000594635.6:ENST00000596915.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	28	2	2.35125	3.4751950000000003	4.59914	0.0436431	0.00616166	0.162255	0.0676501
chr7	101979899	101979999	3367993	0	+	0.53	(0.515,0.57]	chr7	315233	199	INTRON	INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000497815.5:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000558469.5:ENST00000560541.5:ENST00000558836.5:ENST00000606749.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	28	2	2.35125	3.4751950000000003	4.59914	0.0436431	0.00616166	0.162255	0.0676501
chr22	19471286	19471386	7554816	0	-	0.37	(0.35,0.378]	chr22	772380	2	SS5_PROX	SS5_PROX:INTRON	UFD1	ENSG00000070010.19	ENST00000263202.15:ENST00000399523.5:ENST00000459854.5:ENST00000447868.5:ENST00000421968.6:ENST00000484101.5:ENST00000489406.1:ENST00000494054.1:ENST00000474226.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	59	2	1.68908	3.475165	5.26125	0.0301354	0.00191117	0.142482	0.03947
chr17	62489794	62489894	6652988	0	+	0.42	(0.408,0.44]	chr17	649307	33	INTRON	INTRON	TLK2	ENSG00000146872.19	ENST00000582809.5:ENST00000684213.1:ENST00000583843.5:ENST00000579450.5:ENST00000577616.1:ENST00000582195.6:ENST00000682085.1:ENST00000580705.5:ENST00000346027.10:ENST00000326270.13:ENST00000682203.1:ENST00000343388.11:ENST00000683536.1:ENST00000684440.1:ENST00000684772.1:ENST00000682274.1:ENST00000682827.1:ENST00000583690.6:ENST00000682075.1:ENST00000683104.1:ENST00000684012.1:ENST00000581041.5:ENST00000684553.1:ENST00000683737.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	49	2	1.93002	3.4751499999999997	5.02028	0.022095	0.00303216	0.123903	0.0493883
chr17	66326504	66326604	6662536	0	+	0.42	(0.408,0.44]	chr17	650320	200	INTRON	INTRON	PRKCA	ENSG00000154229.12	ENST00000413366.8:ENST00000578063.5:ENST00000583361.1:ENST00000284384.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	49	2	1.93002	3.4751499999999997	5.02028	0.022095	0.00303216	0.123903	0.0493883
chr7	23376535	23376634	3502721	0	-	0.414141	(0.408,0.44]	chr7	326877	135	INTRON	INTRON	IGF2BP3	ENSG00000136231.14	ENST00000258729.8:ENST00000421467.6:ENST00000468263.5:ENST00000492771.5:ENST00000479504.5:ENST00000466809.6:ENST00000491719.5:ENST00000465058.5:ENST00000469723.5:ENST00000474105.5:ENST00000476938.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	90	2	3.2225799999999998	3.4750949999999996	3.72761	4.662e-4	2.79412e-4	0.0199613	0.0148832
chr6	126013401	126013501	2956341	0	+	0.39	(0.378,0.408]	chr6	278044	3	SS5_PROX	SS5_PROX:INTRON	TRMT11	ENSG00000066651.20	ENST00000479748.5:ENST00000368332.7:ENST00000648977.1:ENST00000334379.11:ENST00000466316.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	112	2	2.81806	3.47504	4.13202	5.36236e-4	7.35047e-5	0.0209287	0.00767614
chr17	50741346	50741416	6627199	0	+	0.257143	[0,0.28]	chr17	647217	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	LUC7L3	ENSG00000108848.16	ENST00000508045.5:ENST00000393227.6:ENST00000504563.6:ENST00000505658.6:ENST00000240304.5:ENST00000508482.5:ENST00000505619.5:ENST00000507200.5:ENST00000513025.2:ENST00000507503.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	39	2	2.74901	3.475035	4.20106	0.0695895	0.0188843	0.184298	0.118148
chr4	82963638	82963738	2180774	0	-	0.28	[0,0.28]	chr4	214500	168	INTRON	INTRON	LIN54	ENSG00000189308.11	ENST00000340417.8:ENST00000510877.5:ENST00000446851.6:ENST00000442461.6:ENST00000510557.5:ENST00000508171.5:ENST00000506560.5:ENST00000505397.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	39	2	2.74901	3.475035	4.20106	0.0695895	0.0188843	0.184298	0.118148
chr5	75344428	75344525	2390909	0	+	0.195876	[0,0.28]	chr5	230920	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HMGCR	ENSG00000113161.17	ENST00000511206.5:ENST00000679456.1:ENST00000680160.1:ENST00000287936.9:ENST00000681567.1:ENST00000343975.9:ENST00000680940.1:ENST00000681271.1:ENST00000681410.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	39	2	2.74901	3.475035	4.20106	0.0695895	0.0188843	0.184298	0.118148
chr9	108910809	108910909	4310549	0	-	0.25	[0,0.28]	chr9	396114	4	SS5_PROX	SS5_PROX:INTRON	ELP1	ENSG00000070061.16	ENST00000675765.1:ENST00000374647.10:ENST00000675078.1:ENST00000674948.1:ENST00000676121.1:ENST00000676429.1:ENST00000674704.1:ENST00000674938.1:ENST00000675602.1:ENST00000675215.1:ENST00000676044.1:ENST00000675979.1:ENST00000675325.1:ENST00000495759.6:ENST00000675893.1:ENST00000675943.1:ENST00000675535.1:ENST00000674890.1:ENST00000675233.1:ENST00000676086.1:ENST00000674836.1:ENST00000675406.1:ENST00000675748.1:ENST00000675400.1:ENST00000676237.1:ENST00000675825.1:ENST00000676424.1:ENST00000675647.1:ENST00000675877.1:ENST00000676416.1:ENST00000675052.1:ENST00000674535.1:ENST00000537196.1:ENST00000675566.1:ENST00000675507.1:ENST00000675727.1:ENST00000675711.1:ENST00000675458.1:ENST00000675335.1:ENST00000675321.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	39	2	2.74901	3.475035	4.20106	0.0695895	0.0188843	0.184298	0.118148
chr3	126442043	126442141	1811121	0	-	0.316327	(0.28,0.32]	chr3	181907	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	ZXDC	ENSG00000070476.15	ENST00000389709.8:ENST00000514463.1:ENST00000515545.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	38	2	2.18975	3.47503	4.76031	0.0776042	0.00656106	0.196285	0.0735539
chr1	77609551	77609651	492726	0	-	0.37	(0.35,0.378]	chr1	58292	245	INTRON	INTRON	ZZZ3	ENSG00000036549.13	ENST00000370801.8:ENST00000481346.5:ENST00000476275.5:ENST00000370798.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	43	2	2.23043	3.47498	4.71953	0.0187487	0.0103314	0.117523	0.0850389
chr17	61921775	61921827	6809545	0	-	0.365385	(0.35,0.378]	chr17	672769	2	CDS	CDS:EXON_MRNA	INTS2	ENSG00000108506.13	ENST00000251334.7:ENST00000617492.4:ENST00000444766.7:ENST00000646745.1:ENST00000647009.1:ENST00000646954.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	43	2	2.23043	3.47498	4.71953	0.0187487	0.0103314	0.117523	0.0850389
chr16	23561832	23561925	6323099	0	+	0.408602	(0.408,0.44]	chr16	605548	1	EXON_MRNA	EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	UBFD1	ENSG00000103353.16	ENST00000567212.5:ENST00000395878.8:ENST00000571064.5:ENST00000563366.5:ENST00000565634.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	49	2	1.75791	3.474965	5.19202	0.0378795	0.0016671	0.157034	0.0369207
chr7	152094227	152094327	3450202	0	+	0.4	(0.378,0.408]	chr7	322454	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	GALNT11	ENSG00000178234.13	ENST00000430044.7:ENST00000482812.1:ENST00000431668.1:ENST00000446096.5:ENST00000447778.5:ENST00000423337.5:ENST00000434507.5:ENST00000415421.5:ENST00000422997.6:ENST00000419245.5:ENST00000447796.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	171	2	3.26109	3.47483	3.68857	4.15084e-5	1.29284e-5	0.00546267	0.00266147
chr16	87403492	87403591	6416930	0	+	0.50505	(0.476,0.515]	chr16	615639	5	UTR3	UTR3:EXON_MRNA	MAP1LC3B	ENSG00000140941.14	ENST00000650688.1:ENST00000570189.5:ENST00000268607.10:ENST00000564844.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	49	2	1.74317	3.47481	5.20645	0.0396373	0.00136049	0.161534	0.0336321
chr7	111323084	111323184	3621713	0	-	0.25	[0,0.28]	chr7	337093	3592	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	57	2	1.85666	3.474735	5.09281	0.0660997	0.00372534	0.181924	0.0561984
chr12	48070873	48070971	5318090	0	-	0.408163	(0.378,0.408]	chr12	506155	36	INTRON	INTRON	SENP1	ENSG00000079387.14	ENST00000549518.6:ENST00000552189.5:ENST00000448372.5:ENST00000549595.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	31	2	2.63247	3.47473	4.31699	0.0250408	0.0215745	0.123836	0.12011
chr16	28172764	28172864	6468068	0	-	0.39	(0.378,0.408]	chr16	624573	3	SS5_PROX	SS5_PROX:INTRON	XPO6	ENSG00000169180.12	ENST00000304658.10:ENST00000565698.5:ENST00000573645.1:ENST00000570033.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	31	2	2.63247	3.47473	4.31699	0.0250408	0.0215745	0.123836	0.12011
chr19	17313423	17313522	7029876	0	+	0.383838	(0.378,0.408]	chr19	699973	34	INTRON	INTRON	DDA1	ENSG00000130311.11	ENST00000593466.5:ENST00000359866.9:ENST00000596582.1:ENST00000596925.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	31	2	2.63247	3.47473	4.31699	0.0250408	0.0215745	0.123836	0.12011
chr4	1944770	1944869	1911323	0	+	0.40404	(0.378,0.408]	chr4	191792	25	UTR3	UTR3:EXON_MRNA:INTRON	NSD2	ENSG00000109685.19	ENST00000508803.6:ENST00000398261.6:ENST00000382891.9:ENST00000353275.9:ENST00000382892.6:ENST00000382895.7:ENST00000312087.10:ENST00000503128.5:ENST00000677559.1:ENST00000678714.1:ENST00000511904.1:ENST00000513726.5:ENST00000482415.6:ENST00000514329.5:ENST00000502425.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	31	2	2.63247	3.47473	4.31699	0.0250408	0.0215745	0.123836	0.12011
chr6	147721445	147721545	2991211	0	+	0.38	(0.378,0.408]	chr6	280167	286	INTRON	INTRON	ENSG00000227681	ENSG00000227681.5	ENST00000427015.1:ENST00000432506.5:ENST00000442094.5:ENST00000434985.1	lncRNA	lncRNA	lncRNA	lncRNA	1	31	2	2.63247	3.47473	4.31699	0.0250408	0.0215745	0.123836	0.12011
chr1	223808738	223808837	642999	0	-	0.313131	(0.28,0.32]	chr1	75932	14	INTRON	INTRON	TP53BP2	ENSG00000143514.17	ENST00000343537.12:ENST00000391878.6:ENST00000494100.1:ENST00000496282.5:ENST00000473135.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	47	2	2.08149	3.4744	4.86731	0.031124	0.0116253	0.143644	0.0889104
chr2	53702722	53702821	1117855	0	-	0.282828	(0.28,0.32]	chr2	119764	18	INTRON	INTRON	ASB3	ENSG00000115239.24	ENST00000406053.5:ENST00000263634.8:ENST00000406625.6:ENST00000482829.5:ENST00000394717.3:ENST00000406687.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	47	2	2.08149	3.4744	4.86731	0.031124	0.0116253	0.143644	0.0889104
chr8	60523552	60523652	3757866	0	+	0.3	(0.28,0.32]	chr8	349495	59	INTRON	INTRON	RAB2A	ENSG00000104388.15	ENST00000531289.5:ENST00000262646.12:ENST00000481569.1:ENST00000529579.5:ENST00000466595.5:ENST00000429861.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	47	2	2.08149	3.4744	4.86731	0.031124	0.0116253	0.143644	0.0889104
chr7	884491	884589	3269189	0	+	0.632653	(0.57,1]	chr7	303678	2	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	SUN1:GET4	ENSG00000164828.18:ENSG00000239857.7	ENST00000457861.1:ENST00000265857.8:ENST00000412734.6:ENST00000407192.5:ENST00000441491.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	32	2	2.24434	3.474305	4.70427	0.00677343	9.25341e-4	0.074225	0.0278396
chr1	29149818	29149910	410112	0	-	0.380435	(0.378,0.408]	chr1	49381	2	SS5_PROX	SS5_PROX:INTRON	SRSF4	ENSG00000116350.18	ENST00000373795.7:ENST00000691479.1:ENST00000634348.1:ENST00000466448.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	31	2	2.36428	3.474275	4.58427	0.0441088	0.0128325	0.162255	0.0926667
chr1	54341661	54341761	463112	0	-	0.38	(0.378,0.408]	chr1	55780	59	INTRON	INTRON	SSBP3	ENSG00000157216.16	ENST00000610401.5:ENST00000357475.9:ENST00000371319.8:ENST00000417664.7:ENST00000533946.6:ENST00000326956.12:ENST00000371320.8:ENST00000525990.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	31	2	2.36428	3.474275	4.58427	0.0441088	0.0128325	0.162255	0.0926667
chr13	50398881	50398978	5494165	0	+	0.381443	(0.378,0.408]	chr13	526115	6	INTRON	INTRON	DLEU1	ENSG00000176124.15	ENST00000467721.5:ENST00000468522.5:ENST00000490577.5:ENST00000491341.5:ENST00000491615.5:ENST00000463474.7:ENST00000468168.5:ENST00000476738.5:ENST00000461527.7:ENST00000485007.5:ENST00000475913.5:ENST00000473075.3:ENST00000483444.5:ENST00000469127.5:ENST00000489542.6:ENST00000470726.7:ENST00000479420.5:ENST00000474630.6:ENST00000491482.5:ENST00000647700.1	lncRNA	lncRNA	lncRNA	lncRNA	1	31	2	2.36428	3.474275	4.58427	0.0441088	0.0128325	0.162255	0.0926667
chr20	35773611	35773705	7262898	0	+	0.393617	(0.378,0.408]	chr20	738050	12	INTRON	INTRON	PHF20	ENSG00000025293.17	ENST00000461122.5:ENST00000461405.1:ENST00000374012.8:ENST00000452270.5:ENST00000374000.8:ENST00000339089.10:ENST00000481202.5:ENST00000617560.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	31	2	2.36428	3.474275	4.58427	0.0441088	0.0128325	0.162255	0.0926667
chr4	40101005	40101100	1954307	0	+	0.389474	(0.378,0.408]	chr4	195701	5	INTRON	INTRON	N4BP2	ENSG00000078177.14	ENST00000261435.11:ENST00000511480.5:ENST00000515550.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	31	2	2.36428	3.474275	4.58427	0.0441088	0.0128325	0.162255	0.0926667
chr7	92818899	92818999	3573084	0	-	0.39	(0.378,0.408]	chr7	332810	437	INTRON	INTRON	CDK6	ENSG00000105810.10	ENST00000424848.3:ENST00000265734.8	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	2.36428	3.474275	4.58427	0.0441088	0.0128325	0.162255	0.0926667
chr8	90962834	90962933	3988160	0	-	0.40404	(0.378,0.408]	chr8	365235	16	INTRON	INTRON	C8orf88	ENSG00000253250.3	ENST00000517562.3	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	2.36428	3.474275	4.58427	0.0441088	0.0128325	0.162255	0.0926667
chr9	71684232	71684328	4264280	0	-	0.385417	(0.378,0.408]	chr9	392427	10	UTR3	UTR3:EXON_MRNA	CEMIP2	ENSG00000135048.14	ENST00000377044.9:ENST00000377057.5:ENST00000538669.1:ENST00000377066.9:ENST00000542935.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	31	2	2.36428	3.474275	4.58427	0.0441088	0.0128325	0.162255	0.0926667
chrX	77582343	77582443	7845387	0	-	0.38	(0.378,0.408]	chrX	800035	62	INTRON	INTRON	ATRX	ENSG00000085224.23	ENST00000373344.11:ENST00000395603.7:ENST00000480283.5:ENST00000675732.1:ENST00000623706.3:ENST00000623316.1:ENST00000636868.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	31	2	2.36428	3.474275	4.58427	0.0441088	0.0128325	0.162255	0.0926667
chr1	148150426	148150525	545495	0	-	0.292929	(0.28,0.32]	chr1	63795	64	INTRON	INTRON	NBPF11	ENSG00000263956.8	ENST00000615281.4:ENST00000682118.1:ENST00000614506.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	47	2	1.90263	3.4742100000000002	5.04579	0.0503272	0.00714672	0.17488	0.0723634
chr1	193194803	193194903	285350	0	+	0.3	(0.28,0.32]	chr1	32823	77	INTRON	INTRON	CDC73	ENSG00000134371.14	ENST00000649895.1:ENST00000643006.1:ENST00000367435.5:ENST00000650197.1:ENST00000648071.1:ENST00000635846.1:ENST00000649613.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	47	2	1.90263	3.4742100000000002	5.04579	0.0503272	0.00714672	0.17488	0.0723634
chr10	35043965	35044065	4600678	0	-	0.5	(0.476,0.515]	chr10	423813	45	INTRON	INTRON	CUL2	ENSG00000108094.17	ENST00000626172.3:ENST00000374751.7:ENST00000374748.5:ENST00000374749.8:ENST00000690123.1:ENST00000537177.6:ENST00000374746.6:ENST00000691974.1:ENST00000688571.1:ENST00000690393.1:ENST00000690092.1:ENST00000374754.9:ENST00000691272.1:ENST00000688390.1:ENST00000687282.1:ENST00000691201.1:ENST00000687194.1:ENST00000691962.1:ENST00000691858.1:ENST00000691263.1:ENST00000687524.1:ENST00000673636.2:ENST00000692866.1:ENST00000693739.1:ENST00000686302.1:ENST00000685681.1:ENST00000421317.5:ENST00000684965.1:ENST00000691457.1:ENST00000688541.1:ENST00000689330.1:ENST00000685488.1:ENST00000686748.1:ENST00000690789.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	56	2	1.58842	3.4741850000000003	5.35995	0.0406588	7.54256e-4	0.161534	0.0251179
chr16	23906246	23906346	6324463	0	+	0.29	(0.28,0.32]	chr16	605701	125	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000498739.1	protein_coding	protein_coding	protein_coding	protein_coding	3	57	2	1.90249	3.4741400000000002	5.04579	0.0261803	0.00714672	0.133676	0.0723634
chr8	54001228	54001325	3953090	0	-	0.298969	(0.28,0.32]	chr8	362553	8	INTRON	INTRON	TCEA1	ENSG00000187735.15	ENST00000396401.7:ENST00000521604.7:ENST00000521086.6:ENST00000522635.5:ENST00000522397.5:ENST00000640382.1:ENST00000640041.1:ENST00000520534.5:ENST00000518310.5:ENST00000517351.5:ENST00000521836.1:ENST00000518784.5:ENST00000519704.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	57	2	1.90249	3.4741400000000002	5.04579	0.0261803	0.00714672	0.133676	0.0723634
chr20	3973931	3974031	7308990	0	-	0.3	(0.28,0.32]	chr20	744294	2	SS5_PROX	SS5_PROX:INTRON	RNF24	ENSG00000101236.17	ENST00000336095.10:ENST00000358395.11:ENST00000432261.6:ENST00000545616.2	protein_coding	protein_coding	protein_coding	protein_coding	1	39	2	2.51488	3.47414	4.4334	0.0380957	0.0163355	0.141678	0.109464
chr3	138686392	138686491	1829997	0	-	0.30303	(0.28,0.32]	chr3	183960	12	INTRON	INTRON	PIK3CB	ENSG00000051382.9	ENST00000674063.1:ENST00000289153.6:ENST00000477593.5:ENST00000469284.6:ENST00000544716.5:ENST00000462898.5:ENST00000481749.5:ENST00000493568.5:ENST00000473435.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	39	2	2.51488	3.47414	4.4334	0.0380957	0.0163355	0.141678	0.109464
chrX	74247042	74247140	7841146	0	-	0.306122	(0.28,0.32]	chrX	799716	21	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	FTX	ENSG00000230590.12	ENST00000603672.5:ENST00000430772.6:ENST00000602776.6:ENST00000638681.1:ENST00000652319.1:ENST00000661133.1:ENST00000652071.1:ENST00000602812.6:ENST00000651703.1:ENST00000653018.1:ENST00000658448.1:ENST00000662240.1:ENST00000652527.1:ENST00000651451.1:ENST00000657611.1:ENST00000660481.1:ENST00000659574.1:ENST00000661084.1:ENST00000662494.1:ENST00000670936.1:ENST00000602420.6:ENST00000658203.1:ENST00000638985.1:ENST00000691187.1:ENST00000603037.2:ENST00000687056.1:ENST00000654870.2:ENST00000652540.1:ENST00000652331.2:ENST00000652013.1:ENST00000669263.1:ENST00000657070.1:ENST00000665069.1:ENST00000651936.1:ENST00000652496.1:ENST00000653874.2:ENST00000661335.1:ENST00000664123.1:ENST00000658439.1:ENST00000666535.1:ENST00000652970.1:ENST00000423992.3:ENST00000665313.2:ENST00000651140.1:ENST00000660100.1:ENST00000693483.1:ENST00000656041.1:ENST00000657327.1:ENST00000664343.1:ENST00000656977.1:ENST00000671343.1:ENST00000659407.1:ENST00000671067.1	lncRNA	lncRNA	lncRNA	lncRNA	1	39	2	2.51488	3.47414	4.4334	0.0380957	0.0163355	0.141678	0.109464
chr13	111289735	111289834	5546083	0	+	0.373737	(0.35,0.378]	chr13	529885	9	INTRON	INTRON	ARHGEF7	ENSG00000102606.19	ENST00000317133.9:ENST00000375739.6:ENST00000375741.6:ENST00000646102.2:ENST00000218789.9:ENST00000375736.8:ENST00000426073.6:ENST00000375723.5:ENST00000478679.5	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	2.6498	3.474095	4.29839	0.0294717	0.0210137	0.128055	0.122348
chr3	14163117	14163216	1619011	0	-	0.363636	(0.35,0.378]	chr3	167323	29	INTRON	INTRON	XPC	ENSG00000154767.15	ENST00000285021.12:ENST00000476581.6:ENST00000477324.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	32	2	2.6498	3.474095	4.29839	0.0294717	0.0210137	0.128055	0.122348
chr4	34325030	34325130	2125556	0	-	0.37	(0.35,0.378]	chr4	209578	554	INTRON	INTRON	LINC02484	ENSG00000248685.6	ENST00000658479.1	lncRNA	lncRNA	lncRNA	lncRNA	1	32	2	2.6498	3.474095	4.29839	0.0294717	0.0210137	0.128055	0.122348
chr7	23470110	23470205	3503667	0	-	0.378947	(0.378,0.408]	chr7	326928	1	UTR5	UTR5:EXON_MRNA	IGF2BP3	ENSG00000136231.14	ENST00000258729.8:ENST00000421467.6:ENST00000468005.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	17	483	2	3.12118	3.4737299999999998	3.82628	4.11071e-6	6.70783e-9	0.00146847	2.81534e-5
chr12	132794840	132794938	5449864	0	-	0.44898	(0.44,0.476]	chr12	522042	32	INTRON	INTRON	GOLGA3	ENSG00000090615.16	ENST00000204726.9:ENST00000450791.8:ENST00000693666.1:ENST00000688114.1:ENST00000687190.1:ENST00000690511.1:ENST00000685283.1:ENST00000691696.1:ENST00000691636.1:ENST00000690897.1:ENST00000690465.1:ENST00000456883.7:ENST00000692253.1:ENST00000687502.1:ENST00000688772.1:ENST00000687479.1:ENST00000690709.1:ENST00000545875.4:ENST00000688251.1:ENST00000690573.1:ENST00000685195.1:ENST00000686425.1:ENST00000693437.1:ENST00000692831.1:ENST00000688068.1:ENST00000692951.1:ENST00000689441.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	31	2	2.81896	3.473695	4.12843	0.0337192	0.0120766	0.134145	0.0962311
chr18	8630091	8630191	6868427	0	+	0.46	(0.44,0.476]	chr18	680460	47	INTRON	INTRON	RAB12	ENSG00000206418.5	ENST00000649141.2	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	2.81896	3.473695	4.12843	0.0337192	0.0120766	0.134145	0.0962311
chr21	8447750	8447850	7367035	0	+	0.58	(0.57,1]	chr21	751838	373	INTRON	INTRON	ENSG00000280441	ENSG00000280441.3	ENST00000651813.1:ENST00000652379.1	lncRNA	lncRNA	lncRNA	lncRNA	9	125	2	3.09387	3.4736849999999997	3.8535	2.23389e-6	1.87974e-7	0.00104022	2.01544e-4
chr10	124778371	124778471	4712412	0	-	0.39	(0.378,0.408]	chr10	434817	32	INTRON	INTRON	EEF1AKMT2	ENSG00000203791.15	ENST00000652548.1:ENST00000466270.5:ENST00000368836.7:ENST00000464099.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	190	2	3.1416	3.4736700000000003	3.80574	2.16486e-5	1.09789e-5	0.00379246	0.00244426
chr1	37579147	37579247	424408	0	-	0.35	(0.32,0.35]	chr1	51337	22	INTRON	INTRON	GNL2	ENSG00000134697.13	ENST00000373062.8:ENST00000538069.2:ENST00000469191.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	36	2	2.30673	3.473595	4.64046	0.0584434	0.00724767	0.167723	0.0756327
chr1	230110129	230110229	334508	0	+	0.35	(0.32,0.35]	chr1	38930	182	INTRON	INTRON	GALNT2	ENSG00000143641.10	ENST00000494106.1:ENST00000366672.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	36	2	2.30673	3.473595	4.64046	0.0584434	0.00724767	0.167723	0.0756327
chr10	5701735	5701835	4384513	0	+	0.35	(0.32,0.35]	chr10	404466	16	INTRON	INTRON	TASOR2	ENSG00000108021.21	ENST00000695832.1:ENST00000328090.9:ENST00000695737.1:ENST00000695833.1:ENST00000695834.1:ENST00000695835.1:ENST00000695836.1:ENST00000473789.5:ENST00000477043.5:ENST00000496681.5:ENST00000480839.6:ENST00000645567.1:ENST00000482419.1:ENST00000463468.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	36	2	2.30673	3.473595	4.64046	0.0584434	0.00724767	0.167723	0.0756327
chr15	43867065	43867161	6013048	0	+	0.333333	(0.32,0.35]	chr15	572818	8	UTR3	UTR3:EXON_MRNA	WDR76	ENSG00000092470.12	ENST00000263795.11	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	2.30673	3.473595	4.64046	0.0584434	0.00724767	0.167723	0.0756327
chr9	107298446	107298545	4183529	0	+	0.333333	(0.32,0.35]	chr9	381543	132	INTRON	INTRON	RAD23B	ENSG00000119318.13	ENST00000419616.5:ENST00000358015.8:ENST00000416373.6:ENST00000442587.1	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	2.30673	3.473595	4.64046	0.0584434	0.00724767	0.167723	0.0756327
chr1	54257780	54257874	462269	0	-	0.351064	(0.35,0.378]	chr1	55756	2	SS5_PROX	SS5_PROX:INTRON	SSBP3	ENSG00000157216.16	ENST00000610401.5:ENST00000357475.9:ENST00000371319.8:ENST00000417664.7:ENST00000533946.6:ENST00000326956.12:ENST00000371320.8:ENST00000426150.5:ENST00000533209.5:ENST00000525990.1:ENST00000528787.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	32	2	2.30249	3.4735300000000002	4.64457	0.0519726	0.012652	0.176696	0.0926667
chr13	110880512	110880612	5650287	0	-	0.36	(0.35,0.378]	chr13	538331	4	SS3_PROX	SS3_PROX:INTRON	ANKRD10	ENSG00000088448.14	ENST00000267339.6:ENST00000485844.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	32	2	2.30249	3.4735300000000002	4.64457	0.0519726	0.012652	0.176696	0.0926667
chr2	53920534	53920619	1120051	0	-	0.352941	(0.35,0.378]	chr2	120004	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PSME4	ENSG00000068878.15	ENST00000404125.6:ENST00000389993.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	32	2	2.30249	3.4735300000000002	4.64457	0.0519726	0.012652	0.176696	0.0926667
chr6	36869519	36869619	3089537	0	-	0.37	(0.35,0.378]	chr6	289005	110	INTRON	INTRON	PPIL1	ENSG00000137168.8	ENST00000373699.6	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	2.30249	3.4735300000000002	4.64457	0.0519726	0.012652	0.176696	0.0926667
chr7	111322485	111322585	3621707	0	-	0.36	(0.35,0.378]	chr7	337093	3586	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	236	2	2.43953	3.4735050000000003	4.50748	5.29243e-4	9.53093e-8	0.021226	1.33534e-4
chr1	227038651	227038749	648893	0	-	0.418367	(0.408,0.44]	chr1	76960	27	INTRON	INTRON	CDC42BPA	ENSG00000143776.20	ENST00000366766.8:ENST00000366769.7:ENST00000334218.9:ENST00000366767.7:ENST00000448940.5:ENST00000442054.5:ENST00000366764.8:ENST00000441725.1	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	2.84077	3.473355	4.10594	0.0219367	0.0132196	0.123836	0.0940535
chr6	122488540	122488640	2947836	0	+	0.41	(0.408,0.44]	chr6	277520	45	INTRON	INTRON	PKIB	ENSG00000135549.16	ENST00000615438.4:ENST00000392491.6:ENST00000607474.5:ENST00000608895.5:ENST00000618977.4:ENST00000583007.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	35	2	2.84077	3.473355	4.10594	0.0219367	0.0132196	0.123836	0.0940535
chr6	156844212	156844312	3007825	0	+	0.43	(0.408,0.44]	chr6	281100	144	INTRON	INTRON	ARID1B	ENSG00000049618.24	ENST00000346085.10:ENST00000636930.2:ENST00000647938.1:ENST00000350026.10:ENST00000674298.1:ENST00000674190.1:ENST00000636748.1:ENST00000494260.2:ENST00000636607.1:ENST00000414678.7:ENST00000638000.1:ENST00000636205.1:ENST00000637532.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	35	2	2.84077	3.473355	4.10594	0.0219367	0.0132196	0.123836	0.0940535
chr1	45585886	45585984	93216	0	+	0.479592	(0.476,0.515]	chr1	12558	13	INTRON	INTRON	NASP	ENSG00000132780.17	ENST00000437901.6:ENST00000537798.5:ENST00000437362.6:ENST00000350030.8:ENST00000464190.6:ENST00000527359.5:ENST00000528084.5:ENST00000453748.5:ENST00000525515.5:ENST00000527470.5:ENST00000529333.5:ENST00000531532.5:ENST00000530840.5:ENST00000528238.5:ENST00000534101.1:ENST00000470768.5:ENST00000372052.8:ENST00000351223.7:ENST00000629893.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	60	2	3.11647	3.473325	3.83018	0.0423385	6.41912e-4	0.161744	0.0231685
chr2	99339485	99339585	834832	0	+	0.3	(0.28,0.32]	chr2	93660	15	INTRON	INTRON	EIF5B	ENSG00000158417.11	ENST00000617677.1:ENST00000289371.11	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	2.2609	3.473085	4.68527	0.0671429	0.00819419	0.183051	0.0810802
chr20	537106	537205	7303914	0	-	0.313131	(0.28,0.32]	chr20	743573	87	INTRON	INTRON	CSNK2A1	ENSG00000101266.19	ENST00000646561.1:ENST00000217244.9:ENST00000643660.1:ENST00000645623.1:ENST00000400227.8:ENST00000349736.10:ENST00000644170.1:ENST00000643700.1:ENST00000645910.1:ENST00000645840.1:ENST00000646305.1:ENST00000645260.1:ENST00000642689.1:ENST00000645234.1:ENST00000646814.1:ENST00000646477.1:ENST00000644885.1:ENST00000644710.1:ENST00000647155.1:ENST00000644003.1:ENST00000645249.1:ENST00000647026.1:ENST00000400217.7:ENST00000647348.1:ENST00000643600.1:ENST00000643680.1:ENST00000460062.7:ENST00000643968.1:ENST00000644177.1:ENST00000609525.2:ENST00000645091.1:ENST00000609606.6:ENST00000608066.6:ENST00000646908.1:ENST00000645187.1:ENST00000642160.1:ENST00000608490.2:ENST00000643910.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	38	2	2.2609	3.473085	4.68527	0.0671429	0.00819419	0.183051	0.0810802
chr2	38364974	38365073	1099225	0	-	0.474747	(0.44,0.476]	chr2	117880	55	INTRON	INTRON	ATL2	ENSG00000119787.14	ENST00000378954.9:ENST00000406122.5:ENST00000405384.6:ENST00000402054.5:ENST00000419554.6:ENST00000651368.1:ENST00000452935.6:ENST00000449130.5:ENST00000443098.5:ENST00000456736.5:ENST00000472097.1:ENST00000451483.1:ENST00000416222.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	144	2	3.09494	3.4728399999999997	3.85074	1.77821e-4	7.00776e-6	0.0121697	0.00187943
chr3	182885950	182886010	1578822	0	+	0.35	(0.32,0.35]	chr3	162821	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	ATP11B	ENSG00000058063.16	ENST00000323116.10:ENST00000498086.5:ENST00000490303.5:ENST00000466758.5:ENST00000482070.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	45	2	2.25173	3.472765	4.6938	0.0180122	0.0137794	0.114436	0.0949306
chr5	131771446	131771546	2720489	0	-	0.33	(0.32,0.35]	chr5	255730	264	INTRON	INTRON	FNIP1	ENSG00000217128.13	ENST00000510461.6:ENST00000307954.12:ENST00000307968.11:ENST00000511848.1	protein_coding	protein_coding	protein_coding	protein_coding	2	45	2	2.25173	3.472765	4.6938	0.0180122	0.0137794	0.114436	0.0949306
chr6	136289113	136289212	3231121	0	-	0.50505	(0.476,0.515]	chr6	300408	61	INTRON	INTRON	BCLAF1	ENSG00000029363.17	ENST00000640069.1:ENST00000531224.6:ENST00000353331.8:ENST00000527536.5:ENST00000527613.5:ENST00000530767.5:ENST00000527759.5:ENST00000534269.5:ENST00000532384.5:ENST00000530429.5:ENST00000628517.2:ENST00000529826.5:ENST00000528229.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	109	2	2.89208	3.472705	4.05333	4.83014e-4	5.62932e-5	0.0203603	0.00613846
chr14	37160080	37160180	5877888	0	-	0.32	(0.28,0.32]	chr14	558013	2847	INTRON	INTRON	SLC25A21	ENSG00000183032.12	ENST00000331299.6:ENST00000555449.5:ENST00000557611.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	113	2	3.36727	3.4726749999999997	3.57808	0.00141407	1.9618e-4	0.0340865	0.0122528
chr6	34605256	34605356	3085302	0	-	0.45	(0.44,0.476]	chr6	288673	143	INTRON	INTRON	ILRUN	ENSG00000196821.10	ENST00000374026.7:ENST00000374023.8:ENST00000374021.1	protein_coding	protein_coding	protein_coding	protein_coding	2	68	2	3.07862	3.47261	3.8666	0.0060153	1.50865e-4	0.0674604	0.0106137
chr4	118814727	118814827	2229860	0	-	0.33	(0.32,0.35]	chr4	218375	3	SS5_PROX	SS5_PROX:INTRON	SEC24D	ENSG00000150961.15	ENST00000280551.11:ENST00000514561.5:ENST00000419654.6:ENST00000509818.5:ENST00000506622.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	46	2	2.4053	3.4725900000000003	4.53988	0.0202178	0.0108284	0.109913	0.0920575
chr16	11741976	11742076	6445194	0	-	0.47	(0.44,0.476]	chr16	620838	1	SS5_PROX	SS5_PROX:INTRON	TXNDC11	ENSG00000153066.13	ENST00000283033.10:ENST00000356957.7:ENST00000576969.5:ENST00000573174.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	90	2	3.01782	3.47247	3.92712	7.8136e-4	1.7642e-4	0.0257169	0.01216
chr10	60790012	60790110	4435889	0	+	0.265306	[0,0.28]	chr10	409191	14	INTRON	INTRON	CDK1	ENSG00000170312.17	ENST00000519078.6:ENST00000316629.8:ENST00000395284.8:ENST00000448257.6:ENST00000373809.2:ENST00000487784.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	56	2	2.56073	3.4722999999999997	4.38387	0.0501911	0.00743095	0.156383	0.0772645
chr11	120418965	120419064	4877030	0	+	0.545455	(0.515,0.57]	chr11	455815	73	INTRON	INTRON	ARHGEF12	ENSG00000196914.9	ENST00000397843.7:ENST00000356641.7:ENST00000532993.5:ENST00000529970.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	81	2	3.30665	3.472175	3.6377	0.00213226	2.03938e-5	0.041756	0.00351144
chr19	38629432	38629528	7065642	0	+	0.489583	(0.476,0.515]	chr19	705454	10	INTRON	INTRON	EIF3K	ENSG00000178982.10	ENST00000614624.4:ENST00000593149.5:ENST00000588934.5:ENST00000538434.5:ENST00000593062.5:ENST00000248342.9:ENST00000545173.6:ENST00000591409.5:ENST00000592558.1:ENST00000588299.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	53	2	1.88582	3.472145	5.05847	0.0273268	0.00108081	0.123904	0.0300133
chr1	167260398	167260497	245247	0	+	0.313131	(0.28,0.32]	chr1	29261	21	INTRON	INTRON	POU2F1	ENSG00000143190.23	ENST00000559038.5:ENST00000367866.7:ENST00000557909.5:ENST00000271411.8:ENST00000429375.6:ENST00000560232.6:ENST00000442313.5:ENST00000367865.5:ENST00000492850.5:ENST00000541643.7:ENST00000648671.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	35	2	2.60656	3.472105	4.33765	0.039714	0.0256827	0.143072	0.133676
chr12	51020361	51020461	5324734	0	-	0.32	(0.28,0.32]	chr12	507738	92	INTRON	INTRON	SLC11A2	ENSG00000110911.17	ENST00000547688.7:ENST00000644495.1:ENST00000643884.1:ENST00000546636.5:ENST00000547198.5:ENST00000394904.9:ENST00000262052.9:ENST00000643123.1:ENST00000646740.1:ENST00000642227.1:ENST00000541174.6:ENST00000546743.5:ENST00000547510.5:ENST00000546488.5:ENST00000547579.5:ENST00000550714.5:ENST00000547732.5:ENST00000548193.5:ENST00000646988.1:ENST00000549625.1:ENST00000681324.1:ENST00000550995.5:ENST00000550329.1:ENST00000548150.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	35	2	2.60656	3.472105	4.33765	0.039714	0.0256827	0.143072	0.133676
chr6	35279363	35279462	2851534	0	+	0.292929	(0.28,0.32]	chr6	269370	85	INTRON	INTRON	ZNF76	ENSG00000065029.15	ENST00000491400.5:ENST00000229405.8:ENST00000469195.5:ENST00000486891.5:ENST00000484932.5:ENST00000460229.1:ENST00000373953.8:ENST00000339411.5:ENST00000482946.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	35	2	2.60656	3.472105	4.33765	0.039714	0.0256827	0.143072	0.133676
chr17	32876177	32876277	6757107	0	-	0.47	(0.44,0.476]	chr17	664079	133	INTRON	INTRON	MYO1D	ENSG00000176658.17	ENST00000318217.10:ENST00000579584.5:ENST00000583621.1	protein_coding	protein_coding	protein_coding	protein_coding	4	110	2	2.38636	3.47206	4.55776	0.0047296	2.5822e-6	0.0600445	0.00102358
chr10	70709477	70709576	4447695	0	+	0.40404	(0.378,0.408]	chr10	410378	3	INTRON	INTRON	ADAMTS14	ENSG00000138316.11	ENST00000373207.2:ENST00000373208.5	protein_coding	protein_coding	protein_coding	protein_coding	4	116	2	2.97428	3.472025	3.96977	3.71504e-4	9.19167e-5	0.0178698	0.00801007
chr9	40095259	40095359	4259005	0	-	0.53	(0.515,0.57]	chr9	391902	1043	INTRON	INTRON	ENSG00000284116	ENSG00000284116.1	ENST00000639363.1	lncRNA	lncRNA	lncRNA	lncRNA	1	31	2	2.90311	3.471985	4.04086	0.0197045	0.0094233	0.120063	0.0817766
chr12	56673763	56673862	5335935	0	-	0.424242	(0.408,0.44]	chr12	510192	3	INTRON	INTRON	PTGES3	ENSG00000110958.16	ENST00000537473.2:ENST00000614328.4:ENST00000262033.11:ENST00000414274.7:ENST00000436399.6:ENST00000448157.6:ENST00000456859.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	56	2	1.7519	3.47196	5.19202	0.0239555	0.0016671	0.129259	0.0369207
chr5	139307038	139307138	2499514	0	+	0.27	[0,0.28]	chr5	238914	4	SS3_PROX	SS3_PROX:INTRON	MATR3	ENSG00000280987.4:ENSG00000015479.20	ENST00000509990.5:ENST00000506147.5:ENST00000512107.5:ENST00000361059.7:ENST00000394800.6:ENST00000502929.5:ENST00000504203.5:ENST00000514694.5:ENST00000509644.5:ENST00000505016.2:ENST00000502394.1:ENST00000512876.5:ENST00000513678.5:ENST00000513121.1:ENST00000504045.5:ENST00000504311.5:ENST00000502499.5:ENST00000510056.5:ENST00000511249.5:ENST00000394805.8:ENST00000507860.1:ENST00000509918.5:ENST00000503811.5:ENST00000511978.5:ENST00000618441.5:ENST00000508689.1:ENST00000514528.5:ENST00000504643.5:ENST00000514488.1:ENST00000503340.1:ENST00000504023.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	51	2	2.05756	3.4719050000000005	4.88625	0.0352544	0.0173315	0.150301	0.104099
chr1	113084128	113084228	188203	0	+	0.32	(0.28,0.32]	chr1	20854	101	INTRON	INTRON	LRIG2	ENSG00000198799.12	ENST00000361127.6	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	2.80157	3.471855	4.14214	0.0579756	0.0147132	0.167723	0.106558
chr1	230996384	230996484	336971	0	+	0.29	(0.28,0.32]	chr1	39157	4	SS5_PROX	SS5_PROX:INTRON	ARV1	ENSG00000173409.14	ENST00000497753.1:ENST00000310256.7:ENST00000366658.6:ENST00000480519.5:ENST00000450711.5:ENST00000435927.5:ENST00000459891.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	36	2	2.80157	3.471855	4.14214	0.0579756	0.0147132	0.167723	0.106558
chr19	18455719	18455818	7152342	0	-	0.30303	(0.28,0.32]	chr19	722846	37	INTRON	INTRON	ELL	ENSG00000105656.13	ENST00000262809.9:ENST00000594635.6:ENST00000596124.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	36	2	2.80157	3.471855	4.14214	0.0579756	0.0147132	0.167723	0.106558
chr4	73185622	73185722	2160094	0	-	0.3	(0.28,0.32]	chr4	212794	77	INTRON	INTRON	ANKRD17	ENSG00000132466.20	ENST00000358602.9:ENST00000558247.5:ENST00000330838.10:ENST00000509867.6:ENST00000561029.1:ENST00000559367.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	36	2	2.80157	3.471855	4.14214	0.0579756	0.0147132	0.167723	0.106558
chr6	113947221	113947319	3195485	0	-	0.316327	(0.28,0.32]	chr6	297702	12	EXON_MRNA	EXON_MRNA:INTRON	HDAC2	ENSG00000196591.12	ENST00000519065.6:ENST00000368632.6:ENST00000519108.5:ENST00000523334.1:ENST00000520746.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	36	2	2.80157	3.471855	4.14214	0.0579756	0.0147132	0.167723	0.106558
chr1	26249000	26249100	49635	0	+	0.41	(0.408,0.44]	chr1	6205	43	INTRON	INTRON	CEP85	ENSG00000130695.16	ENST00000451429.8:ENST00000640292.2:ENST00000252992.8	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	2.71911	3.4717900000000004	4.22447	0.0189489	0.0161655	0.109464	0.108861
chr16	72792422	72792522	6388710	0	+	0.42	(0.408,0.44]	chr16	614368	9	INTRON	INTRON	ENSG00000259768	ENSG00000259768.7	ENST00000668995.1:ENST00000687589.1:ENST00000653037.1:ENST00000686426.1	lncRNA	lncRNA	lncRNA	lncRNA	1	34	2	2.71911	3.4717900000000004	4.22447	0.0189489	0.0161655	0.109464	0.108861
chr1	70231858	70231908	142705	0	+	0.42	(0.408,0.44]	chr1	15996	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	SRSF11	ENSG00000116754.14	ENST00000370951.5:ENST00000687381.1:ENST00000370950.7:ENST00000475204.5:ENST00000370949.2:ENST00000395136.7:ENST00000473950.5:ENST00000486667.5:ENST00000481648.5:ENST00000484162.5:ENST00000463859.6:ENST00000690370.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	56	2	1.55035	3.471775	5.3932	0.0455214	7.81492e-4	0.164236	0.0257168
chr3	47673293	47673392	1683967	0	-	0.606061	(0.57,1]	chr3	172014	22	INTRON	INTRON	SMARCC1	ENSG00000173473.11	ENST00000254480.10:ENST00000425518.5:ENST00000483847.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	64	2	3.44193	3.4717700000000002	3.50161	4.86135e-5	3.17447e-5	0.00605189	0.00449886
chr1	198208266	198208356	288168	0	+	0.333333	(0.32,0.35]	chr1	33150	7	INTRON	INTRON	NEK7	ENSG00000151414.15	ENST00000442588.5:ENST00000367385.9:ENST00000538004.5:ENST00000367383.5:ENST00000544035.5	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	2.48693	3.47161	4.45629	0.0338094	0.0246089	0.146709	0.12011
chr18	31941812	31941910	6961388	0	-	0.326531	(0.32,0.35]	chr18	688799	17	INTRON	INTRON	TRAPPC8	ENSG00000153339.15	ENST00000283351.10:ENST00000580104.5:ENST00000582539.5:ENST00000582513.5:ENST00000584876.1:ENST00000577426.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	33	2	2.48693	3.47161	4.45629	0.0338094	0.0246089	0.146709	0.12011
chr19	39453721	39453821	7067941	0	+	0.52	(0.515,0.57]	chr19	705819	2	SS5_PROX	SS5_PROX:INTRON	SUPT5H	ENSG00000196235.14	ENST00000599117.5:ENST00000402194.6:ENST00000601515.5:ENST00000432763.7:ENST00000595368.5:ENST00000594729.5:ENST00000601978.1:ENST00000359191.10:ENST00000598725.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	37	2	2.26012	3.47161	4.6831	0.0160033	0.00471288	0.109464	0.0600108
chr2	45543831	45543931	1112674	0	-	0.33	(0.32,0.35]	chr2	119293	551	INTRON	INTRON	SRBD1	ENSG00000068784.13	ENST00000263736.5:ENST00000475073.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	33	2	2.48693	3.47161	4.45629	0.0338094	0.0246089	0.146709	0.12011
chr20	41111983	41112082	7274357	0	+	0.343434	(0.32,0.35]	chr20	739288	72	INTRON	INTRON	TOP1	ENSG00000198900.7	ENST00000361337.3:ENST00000681113.1:ENST00000681058.1:ENST00000681392.1:ENST00000681884.1:ENST00000680945.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	33	2	2.48693	3.47161	4.45629	0.0338094	0.0246089	0.146709	0.12011
chr3	130956778	130956878	1503559	0	+	0.33	(0.32,0.35]	chr3	157265	2	INTRON	INTRON	ATP2C1	ENSG00000017260.20	ENST00000504381.5:ENST00000505330.5:ENST00000507488.6:ENST00000508532.5:ENST00000533801.6:ENST00000510168.6:ENST00000513801.5:ENST00000504948.5:ENST00000328560.12:ENST00000428331.6:ENST00000422190.6:ENST00000359644.7:ENST00000504612.5:ENST00000513636.1:ENST00000515854.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	33	2	2.48693	3.47161	4.45629	0.0338094	0.0246089	0.146709	0.12011
chr4	755881	755981	1908300	0	+	0.35	(0.32,0.35]	chr4	191255	108	INTRON	INTRON	PCGF3	ENSG00000185619.18	ENST00000362003.9:ENST00000470161.6:ENST00000430644.5:ENST00000440452.5:ENST00000488032.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	33	2	2.48693	3.47161	4.45629	0.0338094	0.0246089	0.146709	0.12011
chr5	79649290	79649390	2399109	0	+	0.33	(0.32,0.35]	chr5	231737	1	SS5_PROX	SS5_PROX:INTRON	TENT2	ENSG00000164329.14	ENST00000423041.6:ENST00000504233.5:ENST00000453514.6:ENST00000428308.6:ENST00000296783.7:ENST00000504982.1:ENST00000513735.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	33	2	2.48693	3.47161	4.45629	0.0338094	0.0246089	0.146709	0.12011
chr8	102304505	102304584	4011649	0	-	0.329114	(0.32,0.35]	chr8	367136	4	SS3_PROX	SS3_PROX:INTRON	UBR5	ENSG00000104517.13	ENST00000520539.6:ENST00000220959.8:ENST00000521922.5:ENST00000520898.5:ENST00000519365.1	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	2.48693	3.47161	4.45629	0.0338094	0.0246089	0.146709	0.12011
chr14	39066672	39066772	5878372	0	-	0.51	(0.476,0.515]	chr14	558072	1	SS5_PROX	SS5_PROX:INTRON	SEC23A	ENSG00000100934.15	ENST00000307712.11:ENST00000537403.5:ENST00000545328.6:ENST00000553925.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	31	2	2.80729	3.471575	4.13586	0.031846	0.0126008	0.13151	0.0980703
chr14	76398905	76399005	5797991	0	+	0.48	(0.476,0.515]	chr14	549239	221	INTRON	INTRON	ESRRB	ENSG00000119715.15	ENST00000512784.6:ENST00000380887.7:ENST00000505752.6:ENST00000644823.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	31	2	2.80729	3.471575	4.13586	0.031846	0.0126008	0.13151	0.0980703
chr15	58920064	58920162	6193996	0	-	0.510204	(0.476,0.515]	chr15	590109	27	INTRON	INTRON	SLTM	ENSG00000137776.17	ENST00000380516.7:ENST00000492526.5:ENST00000557924.5:ENST00000558756.5:ENST00000249736.11:ENST00000559305.5:ENST00000480144.5:ENST00000628684.2:ENST00000559880.5:ENST00000558486.5:ENST00000560682.5:ENST00000557950.5:ENST00000559261.1:ENST00000560012.5:ENST00000484498.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	31	2	2.80729	3.471575	4.13586	0.031846	0.0126008	0.13151	0.0980703
chr7	148729561	148729661	3443994	0	+	0.34	(0.32,0.35]	chr7	321169	2	SS3_PROX	SS3_PROX:INTRON	CUL1	ENSG00000055130.18	ENST00000409469.5:ENST00000662716.1:ENST00000665936.1:ENST00000663044.1:ENST00000602748.5:ENST00000663835.1:ENST00000655324.1:ENST00000662132.1:ENST00000325222.9:ENST00000656001.1:ENST00000666124.1:ENST00000671421.1:ENST00000671397.1:ENST00000662670.1:ENST00000660240.1:ENST00000662975.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	33	2	2.40308	3.47148	4.53988	0.0417732	0.0202178	0.161736	0.109913
chr5	149513903	149514000	2750698	0	-	0.319588	(0.28,0.32]	chr5	259043	3	INTRON	INTRON	CSNK1A1	ENSG00000113712.19	ENST00000261798.10:ENST00000377843.8:ENST00000657001.1:ENST00000515768.6:ENST00000606719.6:ENST00000657462.1:ENST00000661952.1:ENST00000504676.5:ENST00000515435.5:ENST00000662268.1:ENST00000657706.1:ENST00000606299.2:ENST00000670598.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	52	2	1.91611	3.4713849999999997	5.02666	0.0539102	0.0027935	0.164153	0.0488769
chr11	2982772	2982866	4891902	0	-	0.531915	(0.515,0.57]	chr11	458359	6	INTRON	INTRON	NAP1L4	ENSG00000205531.13	ENST00000620138.4:ENST00000380542.9:ENST00000526115.5:ENST00000532325.6:ENST00000448187.5:ENST00000399614.6:ENST00000430811.5:ENST00000529361.5:ENST00000528968.5:ENST00000530064.5:ENST00000526842.5:ENST00000531291.5:ENST00000455338.6:ENST00000534372.1	protein_coding	protein_coding	protein_coding	protein_coding	2	37	2	2.03361	3.4713649999999996	4.90912	0.0325854	0.0021669	0.145164	0.0417866
chr12	122105659	122105759	5240131	0	+	0.52	(0.515,0.57]	chr12	497496	260	INTRON	INTRON	MLXIP	ENSG00000175727.14	ENST00000319080.12	protein_coding	protein_coding	protein_coding	protein_coding	2	37	2	2.03361	3.4713649999999996	4.90912	0.0325854	0.0021669	0.145164	0.0417866
chr19	49929600	49929700	7091780	0	+	0.52	(0.515,0.57]	chr19	710625	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ATF5	ENSG00000169136.13	ENST00000595125.5:ENST00000423777.7:ENST00000600336.1:ENST00000597227.5	protein_coding	protein_coding	protein_coding	protein_coding	2	37	2	2.03361	3.4713649999999996	4.90912	0.0325854	0.0021669	0.145164	0.0417866
chr19	16083737	16083836	7026046	0	+	0.40404	(0.378,0.408]	chr19	699192	13	INTRON	INTRON	TPM4	ENSG00000167460.17	ENST00000646974.2:ENST00000586499.6:ENST00000647464.2:ENST00000668959.1:ENST00000590180.3:ENST00000655004.1:ENST00000642789.1:ENST00000653979.1:ENST00000645471.1:ENST00000659595.1:ENST00000647037.1:ENST00000587201.6:ENST00000643579.2:ENST00000586193.6:ENST00000643494.1:ENST00000670382.1:ENST00000300933.9:ENST00000646575.1:ENST00000586833.7:ENST00000642221.1:ENST00000658224.1:ENST00000344824.11:ENST00000588410.2:ENST00000657915.1:ENST00000588483.2:ENST00000592138.6:ENST00000664983.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	57	2	1.5653	3.471345	5.37739	0.043739	0.0010014	0.162255	0.0288906
chr6	169665742	169665829	3266753	0	-	0.563218	(0.515,0.57]	chr6	303218	2	SS3_PROX	SS3_PROX:INTRON	WDR27	ENSG00000184465.16	ENST00000448612.6:ENST00000648472.1:ENST00000423258.5:ENST00000647790.1:ENST00000546525.5:ENST00000647873.1:ENST00000649303.1:ENST00000647889.1:ENST00000648017.1:ENST00000486490.1:ENST00000496752.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	78	2	2.96467	3.4713399999999996	3.97801	8.94279e-4	9.14583e-5	0.0273458	0.00850096
chr3	9453051	9453144	1359484	0	+	0.311828	(0.28,0.32]	chr3	142793	1	SS5_PROX	SS5_PROX:INTRON	SETD5	ENSG00000168137.20	ENST00000402198.7:ENST00000682536.1:ENST00000663774.1:ENST00000665872.1:ENST00000666307.1:ENST00000693430.1:ENST00000691925.1:ENST00000684606.1:ENST00000691175.1:ENST00000688835.1:ENST00000443339.5:ENST00000406341.5:ENST00000670063.1:ENST00000684055.1:ENST00000407969.5:ENST00000493918.5:ENST00000399686.6:ENST00000413704.5:ENST00000691988.1:ENST00000466242.5:ENST00000682236.1:ENST00000488236.5:ENST00000421188.1:ENST00000478961.6:ENST00000476740.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	85	2	3.04485	3.471305	3.89776	0.00894006	2.03846e-4	0.0799922	0.0124395
chr11	62865647	62865747	4799423	0	+	0.43	(0.408,0.44]	chr11	444781	88	INTRON	INTRON	SLC3A2	ENSG00000168003.18	ENST00000680729.1:ENST00000680002.1:ENST00000681467.1:ENST00000377890.6:ENST00000538084.2:ENST00000681569.1:ENST00000680725.1:ENST00000377891.6:ENST00000377889.6:ENST00000681215.1:ENST00000535296.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	96	2	3.39041	3.47128	3.55215	7.01039e-4	1.80518e-4	0.0241881	0.0121877
chr6	17667677	17667776	3065813	0	-	0.454545	(0.44,0.476]	chr6	284840	19	INTRON	INTRON	NUP153	ENSG00000124789.12	ENST00000613258.4:ENST00000537253.5:ENST00000262077.3	protein_coding	protein_coding	protein_coding	protein_coding	4	120	2	3.43595	3.47127	3.50659	1.37632e-4	5.83536e-5	0.0106923	0.00625795
chr8	104528415	104528515	4014115	0	-	0.45	(0.44,0.476]	chr8	367433	190	INTRON	INTRON	LRP12	ENSG00000147650.12	ENST00000424843.6:ENST00000276654.10:ENST00000520770.1:ENST00000519675.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	62	2	1.4962	3.4712	5.4462	0.0392301	5.83686e-4	0.161534	0.0223753
chr10	63237869	63237969	4633106	0	-	0.48	(0.476,0.515]	chr10	426215	175	INTRON	INTRON	JMJD1C	ENSG00000171988.20	ENST00000399262.7:ENST00000402544.5:ENST00000542921.5:ENST00000469152.5:ENST00000489372.4:ENST00000633035.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	44	2	2.16377	3.471165	4.77856	0.0243026	0.00305743	0.12011	0.0509893
chr12	69265739	69265838	5163778	0	+	0.515152	(0.476,0.515]	chr12	489050	28	INTRON	INTRON	CPSF6	ENSG00000111605.18	ENST00000435070.7:ENST00000650046.1:ENST00000456847.7:ENST00000266679.8:ENST00000551516.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	44	2	2.16377	3.471165	4.77856	0.0243026	0.00305743	0.12011	0.0509893
chr19	49928181	49928279	7202032	0	-	0.510204	(0.476,0.515]	chr19	730677	6	UTR5	UTR5:EXON_MRNA:SS3_PROX:INTRON	NUP62	ENSG00000213024.12	ENST00000422090.2:ENST00000352066.8:ENST00000597723.5:ENST00000597029.5:ENST00000596217.1:ENST00000595463.5:ENST00000593652.5:ENST00000599567.5:ENST00000596437.5:ENST00000600583.5:ENST00000594673.5:ENST00000599788.1:ENST00000600935.1:ENST00000596680.5:ENST00000601665.5:ENST00000599560.5:ENST00000599186.5:ENST00000597814.1:ENST00000599830.1:ENST00000598301.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	44	2	2.16377	3.471165	4.77856	0.0243026	0.00305743	0.12011	0.0509893
chr1	227772912	227773011	330672	0	+	0.383838	(0.378,0.408]	chr1	38090	20	INTRON	INTRON	SNAP47	ENSG00000143740.15	ENST00000681827.1:ENST00000679575.1:ENST00000680854.1:ENST00000681006.1:ENST00000366760.5:ENST00000681447.1:ENST00000680992.1:ENST00000680695.1:ENST00000366759.9:ENST00000315781.10:ENST00000681685.1:ENST00000681678.1:ENST00000681149.1:ENST00000418653.6:ENST00000617596.5:ENST00000681929.1:ENST00000426344.6:ENST00000680202.1:ENST00000679561.1:ENST00000681465.1:ENST00000681554.1:ENST00000681252.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	35	2	2.72993	3.471095	4.21226	0.0188736	0.0177403	0.11319	0.108861
chr10	48412165	48412265	4432051	0	+	0.39	(0.378,0.408]	chr10	408600	16	INTRON	INTRON	MAPK8	ENSG00000107643.17	ENST00000395611.7:ENST00000374189.6:ENST00000429041.6:ENST00000374179.8:ENST00000360332.7:ENST00000374182.7:ENST00000374176.8:ENST00000374174.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	35	2	2.72993	3.471095	4.21226	0.0188736	0.0177403	0.11319	0.108861
chr15	60460493	60460593	6195823	0	-	0.39	(0.378,0.408]	chr15	590445	33	INTRON	INTRON	ICE2	ENSG00000128915.12	ENST00000261520.9:ENST00000558181.5:ENST00000561114.5:ENST00000558512.5:ENST00000560895.5:ENST00000561446.5:ENST00000560668.5:ENST00000561087.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	93	2	3.08809	3.471	3.85391	5.71831e-4	2.84248e-4	0.0217398	0.015495
chr2	61462362	61462462	1130470	0	-	0.47	(0.44,0.476]	chr2	121499	412	INTRON	INTRON	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000453133.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	58	2	2.70421	3.4708799999999997	4.23755	0.0263357	9.23275e-4	0.122221	0.0278392
chr7	117034083	117034183	3386798	0	+	0.48	(0.476,0.515]	chr7	317151	107	INTRON	INTRON	ST7:ST7-OT4	ENSG00000004866.22:ENSG00000214188.9	ENST00000393446.6:ENST00000265437.9:ENST00000393451.7:ENST00000438863.5:ENST00000393449.5:ENST00000443979.5:ENST00000323984.8:ENST00000417919.5:ENST00000446490.5:ENST00000471110.5:ENST00000422922.5:ENST00000432298.5:ENST00000449366.5:ENST00000487459.5:ENST00000393443.5:ENST00000467538.5:ENST00000434836.5:ENST00000465133.5:ENST00000477742.5:ENST00000462544.1:ENST00000393444.7:ENST00000393447.8	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:nonsense_mediated_decay:lncRNA:processed_transcript	2	68	2	3.05152	3.4707049999999997	3.88989	0.0064848	1.35929e-4	0.0699952	0.0100405
chr2	233283844	233283943	1039694	0	+	0.474747	(0.44,0.476]	chr2	110942	7	INTRON	INTRON	ATG16L1	ENSG00000085978.22	ENST00000347464.9:ENST00000373525.9:ENST00000392021.7:ENST00000392017.9:ENST00000479942.5:ENST00000474148.5:ENST00000392020.8:ENST00000392018.1:ENST00000498620.5:ENST00000464645.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	33	2	2.60774	3.4706	4.33346	0.0255874	0.0120349	0.120269	0.0962115
chrX	154510159	154510256	7914132	0	-	0.474227	(0.44,0.476]	chrX	805950	15	EXON_MRNA	EXON_MRNA:INTRON	FAM3A	ENSG00000071889.17	ENST00000359889.9:ENST00000322269.10:ENST00000419205.5:ENST00000621967.4:ENST00000447601.7:ENST00000369643.5:ENST00000612856.4:ENST00000434658.6:ENST00000369641.7:ENST00000393572.5:ENST00000449971.5:ENST00000416319.5:ENST00000426266.5:ENST00000440318.5:ENST00000457212.5:ENST00000412894.5:ENST00000421517.5:ENST00000497506.5:ENST00000442929.1:ENST00000492763.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	33	2	2.60774	3.4706	4.33346	0.0255874	0.0120349	0.120269	0.0962115
chr2	148666132	148666232	891966	0	+	0.44	(0.408,0.44]	chr2	98781	202	INTRON	INTRON	EPC2	ENSG00000135999.12	ENST00000457184.5:ENST00000258484.11:ENST00000409654.5:ENST00000397424.2	protein_coding	protein_coding	protein_coding	protein_coding	2	44	2	1.94273	3.4705500000000002	4.99837	0.0456237	0.00131369	0.149888	0.0333932
chr11	68551386	68551486	4818252	0	+	0.45	(0.44,0.476]	chr11	448964	2	SS5_PROX	SS5_PROX:INTRON	PPP6R3	ENSG00000110075.15	ENST00000529907.5:ENST00000534534.5:ENST00000524845.5:ENST00000393800.7:ENST00000265637.8:ENST00000524904.5:ENST00000393801.7:ENST00000265636.9:ENST00000529710.5:ENST00000527403.6	protein_coding	protein_coding	protein_coding	protein_coding	5	62	2	1.54104	3.47052	5.4	0.0339289	7.02611e-4	0.146815	0.024224
chr12	93816307	93816406	5191295	0	+	0.444444	(0.44,0.476]	chr12	490937	3	INTRON	INTRON	CRADD	ENSG00000169372.13	ENST00000332896.8:ENST00000549615.5:ENST00000551065.5:ENST00000548483.5:ENST00000542893.2:ENST00000609189.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	44	2	2.08277	3.47047	4.85817	0.0309998	0.00223254	0.13151	0.0435144
chr9	91933119	91933219	4285097	0	-	0.5	(0.476,0.515]	chr9	393926	88	INTRON	INTRON	ROR2	ENSG00000169071.15	ENST00000375715.5:ENST00000375708.4:ENST00000495386.5:ENST00000546883.1:ENST00000476440.1:ENST00000493846.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	143	2	3.0627	3.47045	3.8782	2.02307e-4	6.01383e-6	0.0129814	0.0017156
chr14	102719009	102719108	5823806	0	+	0.494949	(0.476,0.515]	chr14	552528	40	INTRON	INTRON	RCOR1	ENSG00000089902.10	ENST00000262241.7	protein_coding	protein_coding	protein_coding	protein_coding	3	49	2	1.96833	3.47043	4.97253	0.0195007	0.00311573	0.119967	0.0498063
chrX	54566889	54566989	7664982	0	+	0.42	(0.408,0.44]	chrX	784797	64	UTR3	UTR3:EXON_MRNA:INTRON	GNL3L	ENSG00000130119.17	ENST00000674498.1:ENST00000360845.3	protein_coding	protein_coding	protein_coding	protein_coding	3	49	2	1.69566	3.470335	5.24501	0.0453922	0.00137378	0.164236	0.0336718
chr3	9798121	9798199	1360969	0	+	0.282051	(0.28,0.32]	chr3	143092	1	SS5_PROX	SS5_PROX:INTRON	ARPC4:ARPC4-TTLL3	ENSG00000241553.13:ENSG00000250151.9	ENST00000498623.6:ENST00000424442.5:ENST00000418163.5:ENST00000397261.8:ENST00000417500.5:ENST00000440787.5:ENST00000467289.5:ENST00000485273.1:ENST00000397256.5:ENST00000433034.1:ENST00000453882.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	64	2	1.79721	3.47031	5.14341	0.0408024	0.00185891	0.1451	0.039946
chr8	47895669	47895768	3945084	0	-	0.343434	(0.32,0.35]	chr8	361823	19	INTRON	INTRON	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7	protein_coding	protein_coding	protein_coding	protein_coding	3	59	2	1.60297	3.47021	5.33745	0.0647328	6.1485e-4	0.179192	0.0223951
chr1	235401202	235401302	340012	0	+	0.37	(0.35,0.378]	chr1	39552	3	SS3_PROX	SS3_PROX:INTRON	TBCE	ENSG00000285053.1:ENSG00000284770.2	ENST00000644055.1:ENST00000645655.1:ENST00000647428.1:ENST00000643418.1:ENST00000646624.1:ENST00000647186.1:ENST00000646528.1:ENST00000645351.1:ENST00000643410.1:ENST00000645205.1:ENST00000645836.1:ENST00000642503.1:ENST00000646281.1:ENST00000645069.1:ENST00000644680.1:ENST00000643758.1:ENST00000645578.1:ENST00000642431.1:ENST00000644604.1:ENST00000651186.1:ENST00000643125.1:ENST00000406207.5:ENST00000642463.1:ENST00000645899.1:ENST00000647233.1:ENST00000642926.1:ENST00000644578.1:ENST00000647418.1:ENST00000645372.1:ENST00000645582.1:ENST00000643994.1:ENST00000647407.1:ENST00000642610.2:ENST00000644037.1:ENST00000646463.1:ENST00000366601.8:ENST00000643524.1:ENST00000646536.1:ENST00000643142.1:ENST00000644838.1:ENST00000646286.1:ENST00000646186.1:ENST00000643615.1:ENST00000543662.4:ENST00000646848.1:ENST00000647332.1:ENST00000647489.1:ENST00000644625.1:ENST00000646384.1:ENST00000645551.1:ENST00000646821.1:ENST00000472011.6:ENST00000643238.1:ENST00000646104.1:ENST00000645662.1:ENST00000643993.1:ENST00000645964.1:ENST00000642339.1:ENST00000644217.1:ENST00000642372.1:ENST00000646929.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	35	2	2.53856	3.46992	4.40128	0.0326077	0.0120289	0.133687	0.0962115
chr2	63918134	63918230	1138985	0	-	0.375	(0.35,0.378]	chr2	121959	8	INTRON	INTRON	VPS54	ENSG00000143952.20	ENST00000409558.8:ENST00000272322.9:ENST00000354504.7:ENST00000416400.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	35	2	2.53856	3.46992	4.40128	0.0326077	0.0120289	0.133687	0.0962115
chr3	100398332	100398432	1756628	0	-	0.36	(0.35,0.378]	chr3	178197	110	INTRON	INTRON	TOMM70	ENSG00000154174.8	ENST00000284320.6	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	2.53856	3.46992	4.40128	0.0326077	0.0120289	0.133687	0.0962115
chr6	147345556	147345656	2990140	0	+	0.29	(0.28,0.32]	chr6	280116	58	INTRON	INTRON	STXBP5	ENSG00000164506.15	ENST00000321680.11:ENST00000367481.7:ENST00000367480.7:ENST00000367475.6:ENST00000392291.2	protein_coding	protein_coding	protein_coding	protein_coding	3	113	2	3.06094	3.469865	3.87879	8.54457e-4	4.20566e-4	0.0265194	0.0189827
chr22	21692089	21692182	7482732	0	+	0.473118	(0.44,0.476]	chr22	763402	2	INTRON	INTRON	PPIL2	ENSG00000100023.20	ENST00000679795.1:ENST00000679540.1:ENST00000679580.1:ENST00000681286.1:ENST00000680061.1:ENST00000681338.1:ENST00000681956.1:ENST00000679827.1:ENST00000679534.1:ENST00000679479.1:ENST00000680393.1:ENST00000335025.12:ENST00000498109.2:ENST00000398831.8:ENST00000681394.1:ENST00000679477.1:ENST00000626352.2:ENST00000417788.5:ENST00000681791.1:ENST00000679692.1:ENST00000680962.1:ENST00000680094.1:ENST00000680434.1:ENST00000680109.1:ENST00000406385.1:ENST00000681137.1:ENST00000680860.1:ENST00000680183.1:ENST00000446951.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	139	2	2.28367	3.469805	4.65594	0.00160306	3.26155e-6	0.0367961	0.00128387
chr12	120887893	120887993	5435743	0	-	0.39	(0.378,0.408]	chr12	519663	524	INTRON	INTRON	SPPL3	ENSG00000157837.16	ENST00000353487.7:ENST00000536996.5:ENST00000543608.5:ENST00000543854.5	protein_coding	protein_coding	protein_coding	protein_coding	2	42	2	2.35527	3.46977	4.58427	0.0128325	0.0121511	0.0963966	0.0926667
chr7	150284152	150284252	3673256	0	-	0.26	[0,0.28]	chr7	340876	347	INTRON	INTRON	ACTR3C	ENSG00000106526.11	ENST00000478393.5:ENST00000683684.1:ENST00000252071.8	protein_coding	protein_coding	protein_coding	protein_coding	2	95	2	3.18358	3.46972	3.75586	0.00694532	5.203e-4	0.0718189	0.0204523
chr7	121272926	121273025	3396506	0	+	0.30303	(0.28,0.32]	chr7	317818	11	INTRON	INTRON	CPED1	ENSG00000106034.18	ENST00000310396.10	protein_coding	protein_coding	protein_coding	protein_coding	4	135	2	2.95172	3.4696949999999998	3.98767	3.7205e-4	2.63067e-4	0.0173669	0.0149561
chr4	73188518	73188618	2160123	0	-	0.46	(0.44,0.476]	chr4	212794	106	INTRON	INTRON	ANKRD17	ENSG00000132466.20	ENST00000358602.9:ENST00000558247.5:ENST00000330838.10:ENST00000509867.6:ENST00000561029.1:ENST00000559367.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	67	2	3.22192	3.469595	3.71727	0.00360821	3.2089e-4	0.0533855	0.0159645
chr8	53991207	53991305	3952986	0	-	0.459184	(0.44,0.476]	chr8	362539	26	INTRON	INTRON	TCEA1	ENSG00000187735.15	ENST00000396401.7:ENST00000521604.7:ENST00000521086.6:ENST00000522635.5:ENST00000522397.5:ENST00000640382.1:ENST00000640041.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	41	2	2.33272	3.469595	4.60647	0.0129984	0.0102339	0.0991656	0.0850389
chr2	47171928	47172025	1114851	0	-	0.237113	[0,0.28]	chr2	119572	13	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	CALM2	ENSG00000143933.20	ENST00000272298.12:ENST00000652974.1:ENST00000460218.5:ENST00000655450.1:ENST00000432899.5:ENST00000456319.6:ENST00000656538.1:ENST00000668667.1:ENST00000655728.1:ENST00000409563.5:ENST00000484408.5:ENST00000489742.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	63	2	1.99345	3.4695300000000002	4.94561	0.0211881	0.0150263	0.123133	0.0994339
chr21	34831863	34831963	7446699	0	-	0.3	(0.28,0.32]	chr21	759831	20	INTRON	INTRON	RUNX1	ENSG00000159216.19	ENST00000300305.7:ENST00000675419.1:ENST00000437180.5:ENST00000344691.8:ENST00000482318.5:ENST00000399240.5:ENST00000358356.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	47	2	2.13651	3.46953	4.80255	0.0265696	0.0137406	0.134088	0.0949306
chr3	5216607	5216706	1354491	0	+	0.30303	(0.28,0.32]	chr3	142483	8	UTR3	UTR3:EXON_MRNA	EDEM1	ENSG00000134109.11	ENST00000256497.9	protein_coding	protein_coding	protein_coding	protein_coding	2	47	2	2.13651	3.46953	4.80255	0.0265696	0.0137406	0.134088	0.0949306
chr4	169668706	169668806	2080361	0	+	0.32	(0.28,0.32]	chr4	205618	79	INTRON	INTRON	CLCN3	ENSG00000109572.15	ENST00000511092.5:ENST00000347613.8:ENST00000360642.7:ENST00000512813.5:ENST00000513761.6:ENST00000613795.4:ENST00000507875.5	protein_coding	protein_coding	protein_coding	protein_coding	2	47	2	2.13651	3.46953	4.80255	0.0265696	0.0137406	0.134088	0.0949306
chr5	39064214	39064314	2605546	0	-	0.31	(0.28,0.32]	chr5	247896	427	INTRON	INTRON	RICTOR	ENSG00000164327.13	ENST00000357387.8:ENST00000511516.5:ENST00000296782.9:ENST00000510711.5:ENST00000513566.1:ENST00000514735.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	47	2	2.13651	3.46953	4.80255	0.0265696	0.0137406	0.134088	0.0949306
chr7	152068999	152069099	3449944	0	+	0.32	(0.28,0.32]	chr7	322435	409	INTRON	INTRON	GALNT11	ENSG00000178234.13	ENST00000430044.7:ENST00000482812.1:ENST00000431668.1:ENST00000446096.5:ENST00000447778.5:ENST00000423337.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	47	2	2.13651	3.46953	4.80255	0.0265696	0.0137406	0.134088	0.0949306
chr2	75921076	75921176	817370	0	+	0.37	(0.35,0.378]	chr2	91391	482	INTRON	INTRON	ENSG00000287474	ENSG00000287474.1	ENST00000670606.1	lncRNA	lncRNA	lncRNA	lncRNA	2	48	2	2.19034	3.46947	4.7486	0.023941	0.00418965	0.119443	0.0591344
chr9	4986821	4986921	4095838	0	+	0.38	(0.378,0.408]	chr9	373235	4	INTRON	INTRON	JAK2	ENSG00000096968.14	ENST00000636127.1:ENST00000476574.5:ENST00000381652.4	protein_coding	protein_coding	protein_coding	protein_coding	5	64	2	1.70953	3.469385	5.22924	0.0190881	0.00172721	0.119229	0.0374701
chr12	24832522	24832622	5296734	0	-	0.43	(0.408,0.44]	chr12	503826	4	SS5_PROX	SS5_PROX:INTRON	BCAT1	ENSG00000060982.15	ENST00000261192.12:ENST00000538118.5:ENST00000342945.9:ENST00000539282.5:ENST00000539780.5	protein_coding	protein_coding	protein_coding	protein_coding	4	110	2	2.42404	3.4693300000000002	4.51462	0.00413548	3.40705e-6	0.0566868	0.00120209
chr10	58395962	58396061	4435731	0	+	0.40404	(0.378,0.408]	chr10	409159	10	UTR3	UTR3:EXON_MRNA	TFAM	ENSG00000108064.11	ENST00000487519.6	protein_coding	protein_coding	protein_coding	protein_coding	3	50	2	1.65821	3.46927	5.28033	0.0506302	0.00143651	0.17547	0.0340925
chr7	72923908	72924007	3330239	0	+	0.424242	(0.408,0.44]	chr7	309573	38	INTRON	INTRON	POM121	ENSG00000196313.13	ENST00000627934.3:ENST00000395270.5	protein_coding	protein_coding	protein_coding	protein_coding	5	123	2	2.68751	3.4692600000000002	4.25101	3.87147e-4	3.50592e-5	0.0177751	0.00499276
chr6	13669418	13669518	3058801	0	-	0.31	(0.28,0.32]	chr6	284542	102	INTRON	INTRON	RANBP9	ENSG00000010017.13	ENST00000011619.6	protein_coding	protein_coding	protein_coding	protein_coding	2	49	2	2.42868	3.469245	4.50981	0.0275554	0.0105331	0.123904	0.0908969
chr3	15025949	15026045	1372572	0	+	0.3125	(0.28,0.32]	chr3	144650	5	EXON_LNCRNA	EXON_LNCRNA:INTRON	NR2C2	ENSG00000177463.16	ENST00000425241.6:ENST00000323373.10:ENST00000475707.5:ENST00000393102.7:ENST00000617312.4:ENST00000406272.6:ENST00000478572.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	47	2	1.83771	3.4692	5.10069	0.0591725	0.00610574	0.189982	0.0676501
chr1	29104535	29104635	60888	0	+	0.47	(0.44,0.476]	chr1	7771	62	INTRON	INTRON	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000373798.5:ENST00000649674.1:ENST00000343067.9:ENST00000349460.9:ENST00000490308.2:ENST00000650132.1:ENST00000649992.1:ENST00000460378.1:ENST00000462032.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	89	2	3.22098	3.4691650000000003	3.71735	4.72844e-4	2.82213e-4	0.0201458	0.0149966
chr17	82888074	82888174	6695588	0	+	0.39	(0.378,0.408]	chr17	654957	14	INTRON	INTRON	TBCD	ENSG00000141556.22	ENST00000682479.1:ENST00000682722.1:ENST00000684464.1:ENST00000684544.1:ENST00000681983.1:ENST00000684361.1:ENST00000683184.1:ENST00000683282.1:ENST00000684408.1:ENST00000355528.9:ENST00000683444.1:ENST00000684776.1:ENST00000683041.1:ENST00000684760.1:ENST00000684349.1:ENST00000682213.1:ENST00000683009.1:ENST00000682921.1:ENST00000539345.6:ENST00000684000.1:ENST00000684188.1:ENST00000684429.1:ENST00000682610.1:ENST00000683821.1:ENST00000682654.1:ENST00000576160.6:ENST00000571712.5:ENST00000576996.5:ENST00000574801.5:ENST00000683584.1:ENST00000682099.1:ENST00000684559.1:ENST00000571316.5:ENST00000576760.5:ENST00000572984.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	42	2	1.81685	3.4690649999999996	5.12128	0.0597868	0.00251746	0.189982	0.0446195
chr2	222582885	222582985	1332371	0	-	0.38	(0.378,0.408]	chr2	139828	105	INTRON	INTRON	FARSB	ENSG00000116120.11	ENST00000281828.8	protein_coding	protein_coding	protein_coding	protein_coding	2	42	2	1.81685	3.4690649999999996	5.12128	0.0597868	0.00251746	0.189982	0.0446195
chr20	58426044	58426144	7289914	0	+	0.46	(0.44,0.476]	chr20	741674	73	INTRON	INTRON	VAPB	ENSG00000124164.16	ENST00000475243.6:ENST00000395802.7:ENST00000520497.1:ENST00000265619.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	41	2	1.85146	3.4690250000000002	5.08659	0.0545846	0.00226401	0.182529	0.0425438
chr10	74009248	74009348	4454612	0	+	0.46	(0.44,0.476]	chr10	411385	105	INTRON	INTRON	VCL	ENSG00000035403.18	ENST00000623461.3:ENST00000372755.7:ENST00000624354.3:ENST00000211998.10:ENST00000478896.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	53	2	1.81283	3.46898	5.12513	0.0343005	7.96486e-4	0.135641	0.0258804
chr1	223758591	223758688	320728	0	+	0.505155	(0.476,0.515]	chr1	36914	11	EXON_LNCRNA	EXON_LNCRNA:INTRON	CAPN2	ENSG00000162909.18	ENST00000433674.6:ENST00000295006.6:ENST00000474026.5:ENST00000487223.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	32	2	2.3223	3.468745	4.61519	0.0519312	0.00528365	0.159306	0.0656295
chr15	80079015	80079115	6071232	0	+	0.5	(0.476,0.515]	chr15	578322	33	INTRON	INTRON	ZFAND6	ENSG00000086666.19	ENST00000613266.4:ENST00000561060.5:ENST00000559157.5:ENST00000261749.11:ENST00000561012.5:ENST00000564367.5:ENST00000558494.5:ENST00000618205.4:ENST00000560470.5:ENST00000560228.5:ENST00000559835.5:ENST00000559775.5:ENST00000558688.5:ENST00000560976.5:ENST00000560392.5:ENST00000558390.5:ENST00000558272.5:ENST00000557793.1:ENST00000616533.4:ENST00000558087.5:ENST00000558997.5:ENST00000558724.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	32	2	2.3223	3.468745	4.61519	0.0519312	0.00528365	0.159306	0.0656295
chr19	45143820	45143914	7079555	0	+	0.5	(0.476,0.515]	chr19	708109	3	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	PPP1R37	ENSG00000104866.11	ENST00000221462.9:ENST00000422370.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	32	2	2.3223	3.468745	4.61519	0.0519312	0.00528365	0.159306	0.0656295
chr20	63710163	63710262	7300326	0	+	0.50505	(0.476,0.515]	chr20	743023	6	INTRON	INTRON	ZGPAT	ENSG00000197114.12	ENST00000448100.6:ENST00000355969.11:ENST00000477340.5:ENST00000357119.8:ENST00000369967.7:ENST00000328969.5:ENST00000472711.5:ENST00000478385.5:ENST00000468235.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	32	2	2.3223	3.468745	4.61519	0.0519312	0.00528365	0.159306	0.0656295
chr8	42324193	42324293	3743495	0	+	0.5	(0.476,0.515]	chr8	348154	13	INTRON	INTRON	IKBKB	ENSG00000104365.16	ENST00000520810.6:ENST00000629753.2:ENST00000517890.5:ENST00000520835.7:ENST00000518679.5:ENST00000342222.6:ENST00000520201.5:ENST00000521661.5:ENST00000520655.5:ENST00000522147.4:ENST00000523517.5:ENST00000416505.7:ENST00000649612.3:ENST00000648136.2:ENST00000676525.1:ENST00000523599.2:ENST00000519938.5:ENST00000522133.1:ENST00000523018.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	32	2	2.3223	3.468745	4.61519	0.0519312	0.00528365	0.159306	0.0656295
chr19	58568543	58568637	7218589	0	-	0.37234	(0.35,0.378]	chr19	733430	5	EXON_MRNA	EXON_MRNA:INTRON	MZF1	ENSG00000099326.9	ENST00000215057.7:ENST00000594234.5:ENST00000599369.5:ENST00000595245.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	47	2	2.04224	3.4687349999999997	4.89523	0.0363073	0.00253947	0.138959	0.0465056
chr4	39850251	39850351	2130892	0	-	0.37	(0.35,0.378]	chr4	210094	2	INTRON	INTRON	PDS5A	ENSG00000121892.15	ENST00000303538.13	protein_coding	protein_coding	protein_coding	protein_coding	2	47	2	2.04224	3.4687349999999997	4.89523	0.0363073	0.00253947	0.138959	0.0465056
chr19	57791111	57791211	7105429	0	+	0.37	(0.35,0.378]	chr19	713175	2	SS3_PROX	SS3_PROX:INTRON	ZNF586	ENSG00000083828.16	ENST00000651718.1:ENST00000598885.5:ENST00000598183.1:ENST00000599802.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	61	2	2.01378	3.4686649999999997	4.92355	0.00952336	0.00573514	0.0863913	0.0657377
chr6	47508833	47508933	2873876	0	+	0.37	(0.35,0.378]	chr6	272731	50	INTRON	INTRON	CD2AP	ENSG00000198087.7	ENST00000359314.5	protein_coding	protein_coding	protein_coding	protein_coding	2	45	2	2.54421	3.4686200000000005	4.39303	0.0237246	0.00630238	0.118716	0.0722266
chr2	46612233	46612333	1114248	0	-	0.35	(0.32,0.35]	chr2	119467	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	PIGF	ENSG00000151665.13	ENST00000281382.11:ENST00000306465.8:ENST00000420164.5:ENST00000412717.1:ENST00000495933.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	104	2	3.38796	3.46861	3.54926	0.00133843	1.48523e-4	0.0335491	0.0105885
chr1	40387066	40387165	81577	0	+	0.545455	(0.515,0.57]	chr1	10553	120	INTRON	INTRON	SMAP2	ENSG00000084070.12	ENST00000435168.6:ENST00000372718.8:ENST00000372708.5	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	2.34087	3.468585	4.5963	0.0469761	0.00370287	0.151917	0.0561162
chr19	18836981	18837081	7033370	0	+	0.54	(0.515,0.57]	chr19	700970	33	INTRON	INTRON	UPF1	ENSG00000005007.13	ENST00000262803.10:ENST00000599848.5:ENST00000601981.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	29	2	2.34087	3.468585	4.5963	0.0469761	0.00370287	0.151917	0.0561162
chr20	32841051	32841150	7257381	0	+	0.525253	(0.515,0.57]	chr20	737275	8	INTRON	INTRON	MAPRE1	ENSG00000101367.9	ENST00000375571.6	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	2.34087	3.468585	4.5963	0.0469761	0.00370287	0.151917	0.0561162
chr22	41276896	41276994	7591059	0	-	0.540816	(0.515,0.57]	chr22	777367	18	INTRON	INTRON	RANGAP1	ENSG00000100401.20	ENST00000356244.8:ENST00000405486.5:ENST00000455915.6:ENST00000452543.5:ENST00000418067.1	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	2.43589	3.4684549999999996	4.50102	0.0370871	0.00510768	0.139194	0.0646039
chr5	180572417	180572515	2562656	0	+	0.530612	(0.515,0.57]	chr5	245140	6	INTRON	INTRON	CNOT6	ENSG00000113300.13	ENST00000261951.9:ENST00000393356.7:ENST00000618123.4	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	2.43589	3.4684549999999996	4.50102	0.0370871	0.00510768	0.139194	0.0646039
chr9	91336547	91336646	4280969	0	-	0.525253	(0.515,0.57]	chr9	393803	108	INTRON	INTRON	AUH	ENSG00000148090.12	ENST00000303617.5:ENST00000375731.9:ENST00000478465.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	29	2	2.43589	3.4684549999999996	4.50102	0.0370871	0.00510768	0.139194	0.0646039
chr1	40176549	40176649	80115	0	+	0.46	(0.44,0.476]	chr1	10405	146	INTRON	INTRON	RLF	ENSG00000117000.9	ENST00000372771.5	protein_coding	protein_coding	protein_coding	protein_coding	3	50	2	2.1762	3.46844	4.76068	0.0092251	0.00653414	0.0855292	0.0699952
chr11	2958934	2958989	4891650	0	-	0.527273	(0.515,0.57]	chr11	458302	1	SS3_PROX	SS3_PROX:INTRON	NAP1L4	ENSG00000205531.13	ENST00000620138.4:ENST00000380542.9:ENST00000526115.5:ENST00000492685.5:ENST00000528363.5:ENST00000483643.7:ENST00000532325.6:ENST00000448187.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	51	2	1.89462	3.468435	5.04225	0.0139002	0.00131841	0.10247	0.0331539
chr22	20396116	20396215	7479094	0	+	0.373737	(0.35,0.378]	chr22	762912	3	INTRON	INTRON	ZNF74	ENSG00000185252.19	ENST00000611540.4:ENST00000403682.7:ENST00000400451.7:ENST00000357502.5:ENST00000493734.5:ENST00000420626.1:ENST00000437275.5:ENST00000405993.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	158	2	3.18907	3.468435	3.7478	1.41175e-4	1.64164e-5	0.0108189	0.00305726
chr22	50401507	50401606	7544776	0	+	0.494949	(0.476,0.515]	chr22	771041	70	INTRON	INTRON	PPP6R2	ENSG00000100239.16	ENST00000359139.7:ENST00000395741.7:ENST00000612753.5:ENST00000395744.7:ENST00000216061.9	protein_coding	protein_coding	protein_coding	protein_coding	5	62	2	1.48272	3.46831	5.4539	0.0410274	5.16081e-4	0.161534	0.0208667
chr16	70431758	70431858	6511392	0	-	0.52	(0.515,0.57]	chr16	630693	88	INTRON	INTRON	ST3GAL2	ENSG00000157350.13	ENST00000342907.3:ENST00000566097.1:ENST00000567586.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	84	2	2.57298	3.468305	4.36363	0.00506495	1.01297e-5	0.0646039	0.00247779
chr22	20567844	20567932	7479974	0	+	0.522727	(0.515,0.57]	chr22	763016	7	INTRON	INTRON	MED15	ENSG00000099917.17	ENST00000433831.5:ENST00000292733.11:ENST00000263205.11:ENST00000406969.5:ENST00000382974.6:ENST00000492381.5:ENST00000478831.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	58	2	3.35609	3.46822	3.58035	0.00174131	5.21239e-4	0.0375363	0.0204523
chrX	3902940	3903040	7747624	0	-	0.52	(0.515,0.57]	chrX	793151	1	SS5_PROX	SS5_PROX:INTRON	ENSG00000285756	ENSG00000285756.2	ENST00000648217.1:ENST00000650456.1:ENST00000650538.1:ENST00000424415.2:ENST00000451781.1	lncRNA	lncRNA	lncRNA	lncRNA	2	58	2	3.35609	3.46822	3.58035	0.00174131	5.21239e-4	0.0375363	0.0204523
chr4	55425723	55425813	1960901	0	+	0.388889	(0.378,0.408]	chr4	196586	4	UTR3	UTR3:EXON_MRNA:INTRON	TMEM165	ENSG00000134851.13	ENST00000381334.10:ENST00000508404.5:ENST00000608091.1:ENST00000506103.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	222	2	2.86696	3.468215	4.06947	1.86857e-5	4.63872e-6	0.00330057	0.00158097
chr6	10899640	10899738	2811873	0	+	0.336735	(0.32,0.35]	chr6	264568	4	INTRON	INTRON	SYCP2L	ENSG00000153157.13	ENST00000341041.8:ENST00000283141.11:ENST00000543878.5:ENST00000487561.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	125	2	2.78953	3.468205	4.14688	7.22336e-4	9.76776e-5	0.0245475	0.00889684
chr19	5610946	5611032	7124237	0	-	0.383721	(0.378,0.408]	chr19	717016	4	EXON_MRNA	EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SAFB2	ENSG00000130254.12	ENST00000252542.9:ENST00000591123.5:ENST00000592599.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	93	2	3.39176	3.46791	3.54406	0.00110718	1.17224e-4	0.0306086	0.00929802
chr16	85416824	85416924	6413998	0	+	0.43	(0.408,0.44]	chr16	615465	575	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	2	46	2	2.31565	3.4678700000000005	4.62009	0.0154718	0.00504155	0.100909	0.0646039
chr17	42504157	42504256	6611765	0	+	0.444444	(0.44,0.476]	chr17	644172	9	INTRON	INTRON	ATP6V0A1	ENSG00000033627.17	ENST00000393829.6:ENST00000343619.9:ENST00000537728.5:ENST00000264649.10:ENST00000585525.5:ENST00000544137.5:ENST00000587510.5:ENST00000586201.5:ENST00000588138.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	90	2	2.981	3.46787	3.95474	9.31193e-4	1.54083e-4	0.0278746	0.0113252
chr11	117147983	117148082	4869125	0	+	0.212121	[0,0.28]	chr11	454434	32	INTRON	INTRON	PAFAH1B2	ENSG00000168092.14	ENST00000419197.6:ENST00000527958.6:ENST00000304808.10:ENST00000529887.6:ENST00000526888.1:ENST00000530272.1:ENST00000533206.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	57	2	1.89998	3.46783	5.03568	0.0599553	0.00446141	0.169548	0.0610799
chr1	246565625	246565725	680982	0	-	0.61	(0.57,1]	chr1	79829	4	SS5_PROX	SS5_PROX:INTRON	TFB2M	ENSG00000162851.8	ENST00000366514.5	protein_coding	protein_coding	protein_coding	protein_coding	4	59	2	2.55379	3.467575	4.38136	0.0015786	2.30973e-6	0.0362091	0.00095233100000000005
chr7	138466300	138466400	3434701	0	+	0.32	(0.28,0.32]	chr7	319959	46	INTRON	INTRON	TRIM24	ENSG00000122779.18	ENST00000343526.9:ENST00000415680.6:ENST00000497516.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	72	2	1.45717	3.46748	5.47779	0.0472947	0.00187048	0.16913	0.0390476
chr15	63813832	63813932	6200704	0	-	0.54	(0.515,0.57]	chr15	591445	329	INTRON	INTRON	HERC1	ENSG00000103657.14	ENST00000443617.7:ENST00000561400.1:ENST00000559886.1:ENST00000558532.1:ENST00000560462.1:ENST00000560316.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	58	2	3.30665	3.4674300000000002	3.62821	0.00213226	4.12866e-4	0.041756	0.0181365
chr3	160429723	160429816	1544923	0	+	0.55914	(0.515,0.57]	chr3	160767	4	INTRON	INTRON	SMC4	ENSG00000113810.16	ENST00000357388.8:ENST00000469762.5:ENST00000462787.5:ENST00000344722.5:ENST00000462668.5:ENST00000488017.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	39	2	2.08547	3.467415	4.84936	0.0289426	0.00146032	0.1274	0.0349875
chr17	37282567	37282666	6761794	0	-	0.292929	(0.28,0.32]	chr17	664918	42	INTRON	INTRON	ACACA	ENSG00000278540.5	ENST00000616317.5:ENST00000614428.4:ENST00000612895.4:ENST00000617649.4:ENST00000613146.4:ENST00000615229.4:ENST00000621960.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	38	2	2.32871	3.467405	4.6061	0.0581621	0.0102724	0.167723	0.089002
chr2	105380700	105380799	1200724	0	-	0.313131	(0.28,0.32]	chr2	128334	22	INTRON	INTRON	FHL2	ENSG00000115641.19	ENST00000409177.6:ENST00000322142.13:ENST00000393352.7:ENST00000344213.9:ENST00000530340.6:ENST00000393353.7:ENST00000358129.8:ENST00000409807.5:ENST00000408995.5:ENST00000452732.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	38	2	2.32871	3.467405	4.6061	0.0581621	0.0102724	0.167723	0.089002
chr4	82902052	82902147	1987002	0	+	0.305263	(0.28,0.32]	chr4	198704	5	INTRON	INTRON	THAP9	ENSG00000168152.13	ENST00000514440.1:ENST00000514244.5:ENST00000302236.10:ENST00000509353.5:ENST00000505901.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	38	2	2.32871	3.467405	4.6061	0.0581621	0.0102724	0.167723	0.089002
chr7	152825622	152825721	3451187	0	+	0.282828	(0.28,0.32]	chr7	322567	1	INTRON	INTRON	ACTR3B	ENSG00000133627.18	ENST00000377776.7:ENST00000256001.13:ENST00000397282.2:ENST00000479402.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	38	2	2.32871	3.467405	4.6061	0.0581621	0.0102724	0.167723	0.089002
chr5	28833541	28833641	2330085	0	+	0.43	(0.408,0.44]	chr5	225135	230	INTRON	INTRON	LINC02109	ENSG00000259786.7	ENST00000658190.1	lncRNA	lncRNA	lncRNA	lncRNA	4	56	2	1.49523	3.467315	5.4394	0.0534846	6.50925e-4	0.180041	0.0232863
chr17	39253361	39253461	6765154	0	-	0.37	(0.35,0.378]	chr17	665413	8	UTR3	UTR3:EXON_MRNA	FBXL20	ENSG00000108306.13	ENST00000264658.11	protein_coding	protein_coding	protein_coding	protein_coding	4	59	2	1.77736	3.467295	5.15723	0.0225073	0.00272706	0.124921	0.0467523
chr1	8546902	8547001	371066	0	-	0.323232	(0.32,0.35]	chr1	43505	52	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000400907.6:ENST00000656437.1:ENST00000659924.1:ENST00000480342.5:ENST00000469251.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	36	2	2.37794	3.467275	4.55661	0.0498601	0.00927858	0.156383	0.0855292
chr1	113109345	113109444	188475	0	+	0.343434	(0.32,0.35]	chr1	20919	12	INTRON	INTRON	LRIG2	ENSG00000198799.12	ENST00000361127.6:ENST00000492207.5:ENST00000466161.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	36	2	2.37794	3.467275	4.55661	0.0498601	0.00927858	0.156383	0.0855292
chr6	16255723	16255821	2826146	0	+	0.326531	(0.32,0.35]	chr6	265362	6	INTRON	INTRON	GMPR	ENSG00000137198.10	ENST00000259727.5	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	2.37794	3.467275	4.55661	0.0498601	0.00927858	0.156383	0.0855292
chr7	5419860	5419960	3472044	0	-	0.62	(0.57,1]	chr7	324678	126	INTRON	INTRON	TNRC18	ENSG00000182095.15	ENST00000399537.8:ENST00000430969.6:ENST00000399434.2	protein_coding	protein_coding	protein_coding	protein_coding	5	77	2	3.3877100000000002	3.46718	3.54665	2.33646e-5	9.08966e-6	0.00378116	0.00231903
chr7	119640771	119640871	3627744	0	-	0.25	[0,0.28]	chr7	337315	1403	INTRON	INTRON	LINC02476	ENSG00000225546.6	ENST00000660268.1	lncRNA	lncRNA	lncRNA	lncRNA	2	95	2	3.4206	3.467105	3.51361	0.00322364	0.00142208	0.0507087	0.0346633
chr2	24595642	24595742	710304	0	+	0.39	(0.378,0.408]	chr2	82224	107	INTRON	INTRON	NCOA1	ENSG00000084676.16	ENST00000348332.8:ENST00000496333.5:ENST00000406961.5:ENST00000405141.5:ENST00000407230.5:ENST00000483904.5:ENST00000288599.9:ENST00000395856.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	52	2	2.2708	3.46709	4.66338	0.0103469	0.00646593	0.0850389	0.073179
chr10	11506598	11506698	4555007	0	-	0.43	(0.408,0.44]	chr10	420418	50	INTRON	INTRON	USP6NL	ENSG00000148429.15	ENST00000609104.6:ENST00000379237.6:ENST00000277575.5	protein_coding	protein_coding	protein_coding	protein_coding	2	41	2	2.33431	3.4670499999999995	4.59979	0.0129219	0.0109537	0.0990564	0.0873034
chr14	23081562	23081647	5842847	0	-	0.494118	(0.476,0.515]	chr14	555640	4	SS5_PROX	SS5_PROX:INTRON	ACIN1	ENSG00000100813.15	ENST00000605057.6:ENST00000262710.5:ENST00000457657.5:ENST00000555053.5	protein_coding	protein_coding	protein_coding	protein_coding	2	41	2	2.32001	3.467015	4.61402	0.0136217	0.00947755	0.101682	0.0817766
chr16	30077955	30078053	6336793	0	+	0.510204	(0.476,0.515]	chr16	607198	11	INTRON	INTRON	PPP4C	ENSG00000149923.14	ENST00000563732.5:ENST00000279387.12:ENST00000567040.5:ENST00000568810.5:ENST00000563597.5:ENST00000563200.5:ENST00000564966.5:ENST00000566749.5:ENST00000562664.5:ENST00000627746.2:ENST00000567828.1:ENST00000567642.1:ENST00000562222.5:ENST00000561610.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	41	2	2.32001	3.467015	4.61402	0.0136217	0.00947755	0.101682	0.0817766
chr5	131745289	131745389	2720227	0	-	0.49	(0.476,0.515]	chr5	255730	2	INTRON	INTRON	FNIP1	ENSG00000217128.13	ENST00000510461.6:ENST00000307954.12:ENST00000307968.11:ENST00000511848.1	protein_coding	protein_coding	protein_coding	protein_coding	2	41	2	2.32001	3.467015	4.61402	0.0136217	0.00947755	0.101682	0.0817766
chr7	110873694	110873794	3617214	0	-	0.48	(0.476,0.515]	chr7	337078	1480	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000487733.5:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	41	2	2.32001	3.467015	4.61402	0.0136217	0.00947755	0.101682	0.0817766
chr16	85551967	85552067	6415350	0	+	0.52	(0.515,0.57]	chr16	615465	1927	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	2.76354	3.466955	4.17037	0.0147344	0.0139194	0.10247	0.0983813
chr1	211822063	211822163	631321	0	-	0.33	(0.32,0.35]	chr1	74654	285	INTRON	INTRON	LPGAT1	ENSG00000123684.13	ENST00000366997.9:ENST00000366996.1	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	2.56618	3.466865	4.36755	0.0300552	0.0274185	0.136498	0.129138
chr5	69210264	69210357	2380317	0	+	0.322581	(0.32,0.35]	chr5	229239	6	UTR3	UTR3:EXON_MRNA	CENPH	ENSG00000153044.10	ENST00000515001.5:ENST00000283006.7	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	2.56618	3.466865	4.36755	0.0300552	0.0274185	0.136498	0.129138
chr6	15324224	15324324	2823729	0	+	0.34	(0.32,0.35]	chr6	265192	93	INTRON	INTRON	JARID2	ENSG00000008083.14	ENST00000341776.7:ENST00000397311.4	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	2.56618	3.466865	4.36755	0.0300552	0.0274185	0.136498	0.129138
chr6	20859970	20860070	2831646	0	+	0.34	(0.32,0.35]	chr6	265679	134	INTRON	INTRON	CDKAL1	ENSG00000145996.11	ENST00000274695.8:ENST00000378610.1	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	2.56618	3.466865	4.36755	0.0300552	0.0274185	0.136498	0.129138
chr7	128757091	128757189	3408559	0	+	0.346939	(0.32,0.35]	chr7	318443	20	INTRON	INTRON	CALU	ENSG00000128595.17	ENST00000535011.6:ENST00000542996.6:ENST00000249364.9:ENST00000449187.6:ENST00000479257.5	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	2.56618	3.466865	4.36755	0.0300552	0.0274185	0.136498	0.129138
chr8	143655628	143655727	3880043	0	+	0.323232	(0.32,0.35]	chr8	356489	43	UTR3	UTR3:EXON_MRNA	ZNF623	ENSG00000183309.12	ENST00000501748.3	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	2.56618	3.466865	4.36755	0.0300552	0.0274185	0.136498	0.129138
chrX	41344775	41344871	7645775	0	+	0.34375	(0.32,0.35]	chrX	782532	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DDX3X	ENSG00000215301.11	ENST00000625837.2:ENST00000626301.2:ENST00000629785.2:ENST00000630255.2:ENST00000630370.2:ENST00000630858.2:ENST00000629496.3:ENST00000478993.5:ENST00000457138.7:ENST00000644876.2:ENST00000399959.7:ENST00000644074.1:ENST00000645338.1:ENST00000646196.1:ENST00000642793.1:ENST00000646940.1:ENST00000644307.1:ENST00000645561.1:ENST00000645080.1:ENST00000642597.1:ENST00000642722.1:ENST00000644109.1:ENST00000644958.1:ENST00000646122.1:ENST00000644513.1:ENST00000645589.1:ENST00000441189.4:ENST00000646822.1:ENST00000646223.1:ENST00000643963.1:ENST00000646319.1:ENST00000542215.5:ENST00000644073.1:ENST00000644677.1:ENST00000642322.1:ENST00000645120.1:ENST00000646107.1:ENST00000646627.1:ENST00000642589.1:ENST00000645380.1:ENST00000646390.1:ENST00000642424.1:ENST00000642161.1:ENST00000645574.1:ENST00000646679.1:ENST00000642763.1:ENST00000647286.1:ENST00000642687.1:ENST00000642801.1:ENST00000643820.1:ENST00000646093.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	33	2	2.56618	3.466865	4.36755	0.0300552	0.0274185	0.136498	0.129138
chr9	111897513	111897613	4184458	0	+	0.58	(0.57,1]	chr9	381683	2	SS5_PROX	SS5_PROX:INTRON	UGCG	ENSG00000148154.10	ENST00000374279.4:ENST00000489355.1:ENST00000495085.1:ENST00000490110.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	36	2	1.87901	3.46675	5.05449	0.0152867	1.79828e-4	0.108569	0.0121697
chr4	17485994	17486094	2116089	0	-	0.53	(0.515,0.57]	chr4	209014	248	INTRON	INTRON	QDPR	ENSG00000151552.12	ENST00000513615.5	protein_coding	protein_coding	protein_coding	protein_coding	2	45	2	2.763	3.466685	4.17037	0.0139194	0.00257143	0.10247	0.045134
chr6	136689049	136689149	3234600	0	-	0.5	(0.476,0.515]	chr6	300664	193	INTRON	INTRON	MAP3K5	ENSG00000197442.10	ENST00000359015.5	protein_coding	protein_coding	protein_coding	protein_coding	2	41	2	1.8388	3.466515	5.09423	0.0564473	0.00204588	0.184423	0.04086
chr1	64955933	64956033	474439	0	-	0.35	(0.32,0.35]	chr1	57202	692	INTRON	INTRON	JAK1	ENSG00000162434.13	ENST00000342505.5:ENST00000672247.1:ENST00000673046.1:ENST00000672434.1:ENST00000671746.1:ENST00000673254.1:ENST00000673314.1:ENST00000671954.1:ENST00000672179.1:ENST00000673220.1:ENST00000671929.1:ENST00000673502.1:ENST00000672751.1:ENST00000672099.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	33	2	2.31405	3.46647	4.61889	0.0517107	0.0166646	0.176696	0.102621
chr18	2762436	2762536	6865978	0	+	0.34	(0.32,0.35]	chr18	680145	3	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	SMCHD1	ENSG00000101596.17	ENST00000320876.11:ENST00000688342.1:ENST00000693213.1:ENST00000577880.5:ENST00000584897.5:ENST00000686763.1:ENST00000686864.1:ENST00000688708.1:ENST00000645355.1:ENST00000688964.1:ENST00000685656.1:ENST00000689034.1:ENST00000693522.1:ENST00000583344.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	33	2	2.31405	3.46647	4.61889	0.0517107	0.0166646	0.176696	0.102621
chr18	41975622	41975721	6897656	0	+	0.323232	(0.32,0.35]	chr18	683380	43	INTRON	INTRON	PIK3C3	ENSG00000078142.14	ENST00000262039.9:ENST00000398870.7:ENST00000591011.1:ENST00000589550.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	33	2	2.31405	3.46647	4.61889	0.0517107	0.0166646	0.176696	0.102621
chr5	126967253	126967353	2713925	0	-	0.35	(0.32,0.35]	chr5	255278	205	INTRON	INTRON	MARCHF3	ENSG00000173926.6	ENST00000308660.6:ENST00000502289.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	33	2	2.31405	3.46647	4.61889	0.0517107	0.0166646	0.176696	0.102621
chr6	36527136	36527236	3089178	0	-	0.34	(0.32,0.35]	chr6	288978	11	INTRON	INTRON	STK38	ENSG00000112079.9	ENST00000229812.8	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	2.31405	3.46647	4.61889	0.0517107	0.0166646	0.176696	0.102621
chr14	21245153	21245253	5834923	0	-	0.37	(0.35,0.378]	chr14	554459	83	INTRON	INTRON	HNRNPC	ENSG00000092199.19	ENST00000336053.10:ENST00000553300.6:ENST00000554969.5:ENST00000556142.5:ENST00000554455.5:ENST00000430246.6:ENST00000553753.5:ENST00000555309.5:ENST00000555914.5:ENST00000557442.5:ENST00000556628.5:ENST00000556513.5:ENST00000555883.5:ENST00000557201.5:ENST00000556897.5:ENST00000420743.6:ENST00000554539.5:ENST00000554383.5:ENST00000555215.5:ENST00000555137.5:ENST00000554891.5:ENST00000556226.5:ENST00000555176.5:ENST00000553614.5:ENST00000557336.1:ENST00000557768.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	117	2	3.1438	3.46646	3.78912	4.25686e-4	9.93672e-5	0.0189958	0.00838841
chr7	152360674	152360773	3680540	0	-	0.424242	(0.408,0.44]	chr7	341660	16	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000682301.1:ENST00000452749.2:ENST00000680867.1:ENST00000683800.1:ENST00000684278.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	43	2	2.60048	3.46643	4.33238	0.0218901	0.00484324	0.11491	0.0640618
chr21	43895080	43895180	7414089	0	+	0.4	(0.378,0.408]	chr21	755692	121	INTRON	INTRON	AGPAT3	ENSG00000160216.21	ENST00000291572.13:ENST00000448287.5:ENST00000398061.5	protein_coding	protein_coding	protein_coding	protein_coding	2	45	2	1.94681	3.46634	4.98587	0.0457723	0.00152268	0.149888	0.0360297
chr3	43706359	43706458	1410334	0	+	0.383838	(0.378,0.408]	chr3	147937	34	INTRON	INTRON	ABHD5	ENSG00000011198.10	ENST00000643520.1:ENST00000458276.7:ENST00000649763.1:ENST00000643140.1:ENST00000643500.1:ENST00000644371.2:ENST00000013894.3:ENST00000646378.1:ENST00000643477.1:ENST00000646799.1:ENST00000454293.2:ENST00000642351.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	113	2	3.2565	3.4662949999999997	3.67609	6.32264e-4	4.6355e-5	0.0231174	0.00555027
chr12	111522545	111522643	5412457	0	-	0.5	(0.476,0.515]	chr12	516910	12	INTRON	INTRON	ATXN2	ENSG00000204842.18	ENST00000642389.2:ENST00000608853.5:ENST00000672613.1:ENST00000673436.1:ENST00000643669.2:ENST00000616825.4:ENST00000389153.10:ENST00000550104.5:ENST00000483311.6:ENST00000672335.1:ENST00000492467.6:ENST00000673557.1:ENST00000673283.1:ENST00000673449.1:ENST00000535949.5:ENST00000542287.6:ENST00000644883.1:ENST00000647305.1:ENST00000671792.1:ENST00000392645.6:ENST00000672105.1:ENST00000471866.5:ENST00000549455.1:ENST00000548492.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	32	2	2.23335	3.466265	4.69918	0.0634557	0.00400966	0.177047	0.057767
chr15	28252369	28252467	6123344	0	-	0.510204	(0.476,0.515]	chr15	583303	33	INTRON	INTRON	HERC2	ENSG00000128731.18	ENST00000261609.13	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	2.23335	3.466265	4.69918	0.0634557	0.00400966	0.177047	0.057767
chr15	75885204	75885303	6065487	0	+	0.494949	(0.476,0.515]	chr15	577588	14	INTRON	INTRON	UBE2Q2	ENSG00000140367.12	ENST00000569423.5:ENST00000267938.9:ENST00000561723.5:ENST00000561851.5:ENST00000426727.6:ENST00000567921.1:ENST00000563966.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	32	2	2.23335	3.466265	4.69918	0.0634557	0.00400966	0.177047	0.057767
chr5	180543348	180543447	2562355	0	+	0.363636	(0.35,0.378]	chr5	245090	136	INTRON	INTRON	CNOT6	ENSG00000113300.13	ENST00000261951.9:ENST00000393356.7:ENST00000507016.1:ENST00000618123.4:ENST00000502447.1:ENST00000504343.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	43	2	2.2877	3.466135	4.64457	0.0155765	0.012652	0.109411	0.0926667
chr6	149768897	149768995	2996228	0	+	0.357143	(0.35,0.378]	chr6	280349	28	INTRON	INTRON	PCMT1	ENSG00000120265.19	ENST00000367384.7:ENST00000367378.6:ENST00000484601.6:ENST00000367380.9:ENST00000544496.5:ENST00000649295.1:ENST00000494411.6:ENST00000460828.6:ENST00000464889.7:ENST00000486585.2:ENST00000495487.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	43	2	2.2877	3.466135	4.64457	0.0155765	0.012652	0.109411	0.0926667
chr7	105300667	105300766	3603022	0	-	0.353535	(0.35,0.378]	chr7	336154	20	INTRON	INTRON	SRPK2	ENSG00000135250.17	ENST00000393651.8:ENST00000482897.5:ENST00000460391.5:ENST00000462282.5:ENST00000465112.5:ENST00000482862.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	43	2	2.2877	3.466135	4.64457	0.0155765	0.012652	0.109411	0.0926667
chr9	130732754	130732854	4214052	0	+	0.39	(0.378,0.408]	chr9	386427	179	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000393293.4	protein_coding	protein_coding	protein_coding	protein_coding	14	386	2	3.04344	3.466135	3.88883	6.81444e-6	4.35021e-8	0.00195999	8.51082e-5
chr9	77972930	77973030	4271359	0	-	0.24	[0,0.28]	chr9	392880	502	INTRON	INTRON	GNAQ	ENSG00000156052.11	ENST00000286548.9:ENST00000411677.1	protein_coding	protein_coding	protein_coding	protein_coding	1	44	2	2.64309	3.46612	4.28915	0.0319595	0.0308646	0.14477	0.13151
chr16	18338547	18338647	6454590	0	-	0.49	(0.476,0.515]	chr16	622037	1	SS5_PROX	SS5_PROX:INTRON	PKD1P4	ENSG00000205746.9	ENST00000525846.6	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	1	32	2	2.40608	3.46604	4.526	0.0425709	0.00699701	0.148082	0.0754576
chr16	85669905	85670003	6416555	0	+	0.5	(0.476,0.515]	chr16	615554	11	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000405402.6:ENST00000253458.12:ENST00000393243.5:ENST00000412692.5:ENST00000469381.1:ENST00000438180.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	32	2	2.40608	3.46604	4.526	0.0425709	0.00699701	0.148082	0.0754576
chr2	25831582	25831680	1085067	0	-	0.489796	(0.476,0.515]	chr2	115946	8	INTRON	INTRON	ASXL2	ENSG00000143970.18	ENST00000435504.9:ENST00000336112.9	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	2.40608	3.46604	4.526	0.0425709	0.00699701	0.148082	0.0754576
chr9	125122738	125122838	4351772	0	-	0.46	(0.44,0.476]	chr9	399530	563	INTRON	INTRON	SCAI	ENSG00000173611.18	ENST00000336505.11:ENST00000373549.8:ENST00000477186.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	49	2	1.62896	3.46593	5.3029	0.0546679	0.00102616	0.182674	0.029231300000000002
chr7	152073697	152073797	3449991	0	+	0.44	(0.408,0.44]	chr7	322435	456	INTRON	INTRON	GALNT11	ENSG00000178234.13	ENST00000430044.7:ENST00000482812.1:ENST00000431668.1:ENST00000446096.5:ENST00000447778.5:ENST00000423337.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	50	2	2.17784	3.46591	4.75398	0.00916282	0.00703931	0.0855292	0.0718189
chr6	7155386	7155486	2798841	0	+	0.54	(0.515,0.57]	chr6	263733	142	INTRON	INTRON	RREB1	ENSG00000124782.21	ENST00000379933.7:ENST00000491191.5:ENST00000471433.5:ENST00000379938.7:ENST00000467782.5:ENST00000349384.10:ENST00000334984.10:ENST00000475946.5:ENST00000483150.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	45	2	1.60221	3.46589	5.32957	0.0581855	4.06834e-4	0.188704	0.0185763
chr5	146238630	146238730	2514472	0	+	0.25	[0,0.28]	chr5	240194	8	INTRON	INTRON	ENSG00000275740:RBM27	ENSG00000275740.1:ENSG00000091009.8	ENST00000506502.2:ENST00000265271.7	protein_coding	protein_coding	protein_coding	protein_coding	2	51	2	2.10688	3.465605	4.82433	0.0307985	0.0200334	0.143385	0.109608
chr6	43570301	43570401	3097279	0	-	0.25	[0,0.28]	chr6	290110	4	SS5_PROX	SS5_PROX:INTRON	XPO5	ENSG00000124571.18	ENST00000265351.12	protein_coding	protein_coding	protein_coding	protein_coding	2	51	2	2.10688	3.465605	4.82433	0.0307985	0.0200334	0.143385	0.109608
chr1	224409834	224409933	645185	0	-	0.353535	(0.35,0.378]	chr1	76257	49	INTRON	INTRON	WDR26	ENSG00000162923.17	ENST00000414423.9:ENST00000678917.1:ENST00000651911.2:ENST00000678879.1:ENST00000480676.2:ENST00000486652.5:ENST00000678555.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	43	2	1.82887	3.4655650000000002	5.10226	0.0584878	0.00327038	0.189395	0.0508595
chr3	15715850	15715949	1622992	0	-	0.353535	(0.35,0.378]	chr3	167969	8	INTRON	INTRON	ANKRD28	ENSG00000206560.12	ENST00000399451.6:ENST00000624145.3:ENST00000683139.1:ENST00000412318.5:ENST00000497037.5:ENST00000451422.1:ENST00000498524.5:ENST00000492895.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	43	2	1.82887	3.4655650000000002	5.10226	0.0584878	0.00327038	0.189395	0.0508595
chr4	39703980	39704080	1953050	0	+	0.23	[0,0.28]	chr4	195630	52	INTRON	INTRON	UBE2K	ENSG00000078140.14	ENST00000510934.5:ENST00000261427.10:ENST00000438068.6:ENST00000513231.5:ENST00000503368.5:ENST00000445950.2:ENST00000510719.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	290	2	2.96244	3.465515	3.96859	5.22416e-5	3.56837e-5	0.00590421	0.00506523
chr17	47454320	47454418	6789439	0	-	0.397959	(0.378,0.408]	chr17	669651	31	INTRON	INTRON	MRPL45P2	ENSG00000228782.8	ENST00000425159.7	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	5	150	2	3.17745	3.465325	3.7532	1.31721e-4	1.39544e-5	0.0104376	0.00278668
chr2	113750968	113751068	1216770	0	-	0.56	(0.515,0.57]	chr2	129535	4	SS3_PROX	SS3_PROX:INTRON	SLC35F5	ENSG00000115084.15	ENST00000245680.7:ENST00000409106.5:ENST00000409342.1:ENST00000498768.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	96	2	2.496	3.4651899999999998	4.43438	0.00225531	6.56174e-6	0.0436331	0.00193947
chr12	110287852	110287951	5226164	0	+	0.464646	(0.44,0.476]	chr12	495234	47	INTRON	INTRON	ATP2A2	ENSG00000174437.18	ENST00000552636.2:ENST00000308664.10:ENST00000539276.7:ENST00000377685.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	137	2	2.84488	3.46516	4.08544	7.98065e-5	7.01337e-5	0.00801397	0.00693374
chr1	23967956	23968055	402037	0	-	0.323232	(0.32,0.35]	chr1	48275	1	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	SRSF10	ENSG00000188529.15	ENST00000492112.3:ENST00000344989.10:ENST00000341154.10:ENST00000453840.7:ENST00000484146.6:ENST00000473858.5:ENST00000374452.9:ENST00000374453.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	68	2	1.42176	3.465145	5.50853	0.0511006	0.0010959399999999999	0.176696	0.0304174
chr7	65751720	65751778	3322737	0	+	0.275862	[0,0.28]	chr7	308946	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CCT6P1	ENSG00000228409.7	ENST00000686363.1:ENST00000688735.1:ENST00000689814.1:ENST00000690196.1:ENST00000690636.1:ENST00000687809.1:ENST00000688944.1:ENST00000691983.1:ENST00000688184.1:ENST00000688478.1:ENST00000443108.7:ENST00000686689.1:ENST00000689785.1:ENST00000685316.1:ENST00000442266.3:ENST00000685398.1:ENST00000434500.6	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	1	43	2	2.54624	3.465	4.38376	0.0388449	0.0258536	0.143072	0.133676
chr9	123234336	123234435	4340138	0	-	0.313131	(0.28,0.32]	chr9	398957	206	INTRON	INTRON	STRBP	ENSG00000165209.19	ENST00000348403.10:ENST00000360998.3:ENST00000407982.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	85	2	3.00395	3.4649400000000004	3.92593	0.0101329	1.77822e-4	0.0850389	0.0116289
chr3	153165539	153165639	1537074	0	+	0.36	(0.35,0.378]	chr3	160077	24	UTR3	UTR3:EXON_MRNA	RAP2B	ENSG00000181467.5	ENST00000323534.5	protein_coding	protein_coding	protein_coding	protein_coding	3	98	2	3.02262	3.46493	3.90724	0.00119456	1.41179e-4	0.0315806	0.0102551
chr10	101814106	101814203	4680934	0	-	0.463918	(0.44,0.476]	chr10	432022	1	INTRON	INTRON	OGA	ENSG00000198408.14	ENST00000439817.5:ENST00000361464.8:ENST00000357797.9:ENST00000370094.7:ENST00000429860.1	protein_coding	protein_coding	protein_coding	protein_coding	5	127	2	3.18051	3.46488	3.74925	4.08974e-4	2.04793e-5	0.0185763	0.00351769
chr4	956395	956494	1908712	0	+	0.474747	(0.44,0.476]	chr4	191343	2	EXON_MRNA	EXON_MRNA:INTRON	TMEM175	ENSG00000127419.17	ENST00000513952.5:ENST00000515492.5:ENST00000264771.9:ENST00000452360.6:ENST00000515740.5:ENST00000438836.6:ENST00000508204.5:ENST00000510493.5:ENST00000622959.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	56	2	2.14666	3.464795	4.78293	0.0116436	0.00292033	0.0889659	0.0494641
chr2	55034118	55034218	1121246	0	-	0.29	(0.28,0.32]	chr2	120163	55	INTRON	INTRON	RTN4	ENSG00000115310.19	ENST00000404909.5:ENST00000394611.6:ENST00000317610.11:ENST00000357732.8:ENST00000337526.11:ENST00000357376.7:ENST00000405240.5:ENST00000438462.1:ENST00000427710.5	protein_coding	protein_coding	protein_coding	protein_coding	8	92	2	1.33232	3.464735	5.59715	0.039862	0.00123856	0.161534	0.0322669
chr9	41147590	41147690	4259305	0	-	0.52	(0.515,0.57]	chr9	391932	17	INTRON	INTRON	CBWD6	ENSG00000215126.11	ENST00000613716.4:ENST00000377391.8:ENST00000456520.5:ENST00000382436.7:ENST00000494538.6:ENST00000617917.4:ENST00000613125.4:ENST00000610358.4:ENST00000486387.6:ENST00000617722.4:ENST00000467791.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	32	2	3.03037	3.4644649999999997	3.89856	0.0280943	0.00608732	0.137011	0.0676501
chr17	7484464	7484564	6553311	0	+	0.36	(0.35,0.378]	chr17	636525	2	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	POLR2A	ENSG00000181222.19	ENST00000617998.6:ENST00000674977.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	332	2	3.27114	3.464435	3.65773	1.43583e-5	1.41315e-7	0.0030273	1.69668e-4
chr2	167919639	167919739	1258999	0	-	0.33	(0.32,0.35]	chr2	133340	185	INTRON	INTRON	B3GALT1-AS1	ENSG00000235335.3	ENST00000430546.2:ENST00000657553.1:ENST00000670221.1:ENST00000436982.2	lncRNA	lncRNA	lncRNA	lncRNA	3	104	2	2.84076	3.464155	4.08755	0.0027933	6.37693e-5	0.0469265	0.00660941
chr16	20770034	20770134	6317642	0	+	0.45	(0.44,0.476]	chr16	604592	1	CDS_START	CDS_START:CDS:EXON_MRNA	ACSM3	ENSG00000005187.12	ENST00000568235.5:ENST00000561584.5:ENST00000564701.1:ENST00000289416.10:ENST00000440284.6:ENST00000561795.5	protein_coding	protein_coding	protein_coding	protein_coding	5	63	2	1.78423	3.464005	5.14378	0.0143065	0.00184943	0.104058	0.0388609
chr3	195132390	195132490	1892791	0	-	0.48	(0.476,0.515]	chr3	189461	103	INTRON	INTRON	XXYLT1	ENSG00000173950.16	ENST00000310380.11:ENST00000437101.5:ENST00000473200.1:ENST00000429994.5:ENST00000418940.5:ENST00000491138.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	34	2	2.82673	3.4639300000000004	4.10113	0.0226984	0.0134403	0.124921	0.0946278
chrX	154720420	154720520	7915013	0	-	0.51	(0.476,0.515]	chrX	806107	37	INTRON	INTRON	GAB3	ENSG00000160219.12	ENST00000496390.5:ENST00000424127.3:ENST00000369575.7:ENST00000369568.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	34	2	2.82673	3.4639300000000004	4.10113	0.0226984	0.0134403	0.124921	0.0946278
chr12	122577260	122577350	5241114	0	+	0.233333	[0,0.28]	chr12	497729	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	KNTC1	ENSG00000184445.12	ENST00000450485.6:ENST00000333479.12	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	2.63238	3.46387	4.29536	0.0590175	0.0259691	0.167915	0.133676
chr19	28725089	28725189	7168358	0	-	0.28	[0,0.28]	chr19	724258	1	SS3_PROX	SS3_PROX:INTRON	ENSG00000283403:ENSG00000283269	ENSG00000283403.1:ENSG00000283269.1	ENST00000592347.5:ENST00000586528.1	lncRNA	lncRNA	lncRNA:transcribed_unprocessed_pseudogene	lncRNA:processed_transcript	1	38	2	2.63238	3.46387	4.29536	0.0590175	0.0259691	0.167915	0.133676
chr6	167845293	167845392	3034521	0	+	0.232323	[0,0.28]	chr6	282711	170	INTRON	INTRON	AFDN	ENSG00000130396.21	ENST00000683244.1:ENST00000400825.8:ENST00000351017.9:ENST00000344191.8:ENST00000392112.5:ENST00000392108.7:ENST00000400824.8:ENST00000400822.7:ENST00000447894.6:ENST00000366809.6:ENST00000366806.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	38	2	2.63238	3.46387	4.29536	0.0590175	0.0259691	0.167915	0.133676
chr7	123736118	123736218	3632532	0	-	0.27	[0,0.28]	chr7	337581	265	INTRON	INTRON	WASL	ENSG00000106299.8	ENST00000223023.5	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	2.63238	3.46387	4.29536	0.0590175	0.0259691	0.167915	0.133676
chr1	54255396	54255496	462242	0	-	0.57	(0.515,0.57]	chr1	55743	4	SS5_PROX	SS5_PROX:INTRON	SSBP3	ENSG00000157216.16	ENST00000610401.5:ENST00000357475.9:ENST00000371319.8:ENST00000417664.7:ENST00000533946.6:ENST00000326956.12:ENST00000371320.8:ENST00000426150.5:ENST00000420121.5:ENST00000533209.5:ENST00000525990.1:ENST00000528787.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	37	2	2.32836	3.46375	4.59914	0.0126662	0.00616166	0.0982897	0.0676501
chr17	8537425	8537525	6721090	0	-	0.53	(0.515,0.57]	chr17	659595	11	INTRON	INTRON	MYH10	ENSG00000133026.14	ENST00000379980.8:ENST00000269243.8:ENST00000688902.1:ENST00000684843.1:ENST00000687178.1:ENST00000692526.1:ENST00000688497.1:ENST00000685418.1:ENST00000693441.1:ENST00000686654.1:ENST00000360416.8:ENST00000691566.1:ENST00000686521.1:ENST00000692077.1:ENST00000686956.1:ENST00000465458.2:ENST00000690895.1:ENST00000690548.1:ENST00000692894.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	37	2	2.32836	3.46375	4.59914	0.0126662	0.00616166	0.0982897	0.0676501
chr1	51655639	51655739	99778	0	+	0.39	(0.378,0.408]	chr1	13250	32	INTRON	INTRON	OSBPL9	ENSG00000117859.19	ENST00000371714.5:ENST00000428468.6:ENST00000447887.5:ENST00000495776.5:ENST00000435274.6:ENST00000453295.5:ENST00000489990.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	31	2	2.71183	3.46373	4.21563	0.0315429	0.0170789	0.13151	0.110899
chr12	76806228	76806324	5174275	0	+	0.40625	(0.378,0.408]	chr12	490087	4	INTRON	INTRON	ZDHHC17	ENSG00000186908.15	ENST00000546778.5:ENST00000426126.7:ENST00000552453.5:ENST00000547620.5:ENST00000550876.1:ENST00000547604.1:ENST00000551407.5:ENST00000550163.5:ENST00000549682.5:ENST00000549944.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	31	2	2.71183	3.46373	4.21563	0.0315429	0.0170789	0.13151	0.110899
chr12	123188995	123189094	5443609	0	-	0.40404	(0.378,0.408]	chr12	520806	74	INTRON	INTRON	MPHOSPH9	ENSG00000051825.15	ENST00000606320.6:ENST00000541076.6:ENST00000545556.6:ENST00000302373.8:ENST00000539024.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	31	2	2.71183	3.46373	4.21563	0.0315429	0.0170789	0.13151	0.110899
chr13	100278440	100278540	5529446	0	+	0.39	(0.378,0.408]	chr13	528532	47	INTRON	INTRON	PCCA	ENSG00000175198.17	ENST00000376286.8:ENST00000376279.7:ENST00000376285.6:ENST00000647303.1:ENST00000637657.1:ENST00000636366.1:ENST00000636475.1:ENST00000636420.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	31	2	2.71183	3.46373	4.21563	0.0315429	0.0170789	0.13151	0.110899
chr3	48050197	48050297	1687113	0	-	0.39	(0.378,0.408]	chr3	172280	339	INTRON	INTRON	MAP4	ENSG00000047849.22	ENST00000395734.7:ENST00000426837.6:ENST00000360240.10:ENST00000423088.5:ENST00000439356.2:ENST00000468075.2	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	2.71183	3.46373	4.21563	0.0315429	0.0170789	0.13151	0.110899
chr6	111010414	111010513	2939589	0	+	0.393939	(0.378,0.408]	chr6	276877	19	INTRON	INTRON	RPF2	ENSG00000197498.13	ENST00000368864.8:ENST00000441448.7:ENST00000607388.1:ENST00000425871.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	31	2	2.71183	3.46373	4.21563	0.0315429	0.0170789	0.13151	0.110899
chr16	88660647	88660737	6539301	0	-	0.133333	[0,0.28]	chr16	633751	1	SSB_ADJ	SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MVD	ENSG00000167508.12	ENST00000301012.8:ENST00000569177.5:ENST00000567064.5:ENST00000568133.5:ENST00000563785.5:ENST00000568709.5:ENST00000563170.5:ENST00000562651.5:ENST00000565610.5:ENST00000563463.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	61	2	1.66929	3.46372	5.25815	0.0537506	0.0066548	0.180803	0.0703807
chr6	147673581	147673681	2990731	0	+	0.26	[0,0.28]	chr6	280159	124	INTRON	INTRON	ENSG00000227681	ENSG00000227681.5	ENST00000427015.1:ENST00000432506.5	lncRNA	lncRNA	lncRNA	lncRNA	3	61	2	1.62313	3.463685	5.30424	0.0605286	0.00584781	0.191883	0.0667594
chr2	27400324	27400424	1087208	0	-	0.49	(0.476,0.515]	chr2	116461	128	INTRON	INTRON	PPM1G	ENSG00000115241.11	ENST00000472077.1:ENST00000344034.5:ENST00000484925.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	107	2	2.67242	3.4636649999999998	4.25491	0.00136918	1.76524e-5	0.0336718	0.0031975
chr1	229266435	229266535	652342	0	-	0.35	(0.32,0.35]	chr1	77229	26	EXON_LNCRNA	EXON_LNCRNA:INTRON	ENSG00000177788	ENSG00000177788.7	ENST00000654028.1:ENST00000653511.1:ENST00000656366.1:ENST00000429227.1:ENST00000660017.1	lncRNA	lncRNA	lncRNA	lncRNA	2	49	2	1.99307	3.46366	4.93425	0.04271	0.00281048	0.148082	0.0488779
chr5	31428388	31428485	2595937	0	-	0.340206	(0.32,0.35]	chr5	246550	36	INTRON	INTRON	DROSHA	ENSG00000113360.17	ENST00000344624.8:ENST00000511367.6:ENST00000513349.5:ENST00000504133.5:ENST00000510178.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	49	2	1.99307	3.46366	4.93425	0.04271	0.00281048	0.148082	0.0488779
chr19	21404228	21404328	7040892	0	+	0.34	(0.32,0.35]	chr19	702018	54	INTRON	INTRON	ZNF493	ENSG00000196268.12	ENST00000596302.5:ENST00000392288.7:ENST00000355504.4:ENST00000594390.5:ENST00000596815.1:ENST00000339914.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	103	2	3.25954	3.4636050000000003	3.66767	8.30614e-4	2.88334e-4	0.0266389	0.0150627
chr1	179842033	179842131	593101	0	-	0.520408	(0.515,0.57]	chr1	71080	22	UTR3	UTR3:EXON_MRNA	TOR1AIP2	ENSG00000169905.13	ENST00000367612.7:ENST00000609928.6	protein_coding	protein_coding	protein_coding	protein_coding	5	60	2	1.56269	3.463545	5.3644	0.0319658	1.52226e-4	0.13174	0.0106137
chr5	133986805	133986904	2725880	0	-	0.434343	(0.408,0.44]	chr5	256443	55	INTRON	INTRON	VDAC1	ENSG00000213585.11	ENST00000265333.8:ENST00000395044.7:ENST00000395047.6:ENST00000425992.2	protein_coding	protein_coding	protein_coding	protein_coding	2	42	2	2.49983	3.46348	4.42713	0.0173083	0.00713527	0.104099	0.0756118
chr18	747419	747519	6940051	0	-	0.45	(0.44,0.476]	chr18	686492	1	SS5_PROX	SS5_PROX:INTRON	YES1	ENSG00000176105.14	ENST00000584307.5:ENST00000314574.5:ENST00000577961.5	protein_coding	protein_coding	protein_coding	protein_coding	5	143	2	3.0558	3.463405	3.87101	2.18249e-4	6.14028e-6	0.0135423	0.0017399
chr2	171052066	171052165	1263001	0	-	0.484848	(0.476,0.515]	chr2	133858	15	INTRON	INTRON	TLK1	ENSG00000198586.14	ENST00000431350.7:ENST00000360843.7:ENST00000359766.7:ENST00000521943.5:ENST00000434911.6:ENST00000409443.6:ENST00000413010.5:ENST00000478683.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	42	2	2.48551	3.4633950000000002	4.44128	0.0151924	0.00756632	0.0994339	0.0773151
chr5	178810074	178810174	2779579	0	-	0.5	(0.476,0.515]	chr5	262272	121	INTRON	INTRON	AACSP1	ENSG00000250420.8	ENST00000503486.6	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	2	42	2	2.48551	3.4633950000000002	4.44128	0.0151924	0.00756632	0.0994339	0.0773151
chr1	119141157	119141246	199739	0	+	0.561798	(0.515,0.57]	chr1	22165	4	SS5_PROX	SS5_PROX:INTRON	WARS2-AS1	ENSG00000231365.7	ENST00000667138.1:ENST00000425884.6:ENST00000688395.1:ENST00000440150.5:ENST00000670000.1:ENST00000457043.1:ENST00000418015.1:ENST00000413531.5:ENST00000667936.1:ENST00000685192.1	lncRNA	lncRNA	lncRNA	lncRNA	2	37	2	1.94945	3.463335	4.97722	0.0414068	0.00168681	0.161557	0.0370386
chr13	72741538	72741638	5509190	0	+	0.32	(0.28,0.32]	chr13	527127	31	INTRON	INTRON	BORA	ENSG00000136122.18	ENST00000652266.1:ENST00000618209.5:ENST00000613797.4:ENST00000651477.1:ENST00000390667.11:ENST00000651376.1:ENST00000377814.6:ENST00000471712.5:ENST00000464754.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	48	2	2.33771	3.4632300000000003	4.58875	0.0230574	0.0142701	0.118056	0.103838
chr12	25232078	25232174	5298194	0	-	0.395833	(0.378,0.408]	chr12	503940	11	INTRON	INTRON	KRAS	ENSG00000133703.14	ENST00000256078.10:ENST00000311936.8:ENST00000686877.1:ENST00000685328.1:ENST00000693229.1:ENST00000687356.1:ENST00000692768.1:ENST00000688940.1:ENST00000690804.1:ENST00000557334.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	43	2	2.51464	3.463165	4.41169	0.0199606	0.00684341	0.109608	0.0748032
chr22	29289158	29289254	7496277	0	+	0.395833	(0.378,0.408]	chr22	764836	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	EWSR1	ENSG00000182944.18	ENST00000629659.2:ENST00000332050.10:ENST00000397938.7:ENST00000406548.5:ENST00000331029.11:ENST00000483415.5:ENST00000414183.6:ENST00000333395.10:ENST00000332035.10:ENST00000479135.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	43	2	2.51464	3.463165	4.41169	0.0199606	0.00684341	0.109608	0.0748032
chr16	56374124	56374224	6490754	0	-	0.39	(0.378,0.408]	chr16	627673	44	INTRON	INTRON	AMFR	ENSG00000159461.15	ENST00000290649.10:ENST00000492830.5:ENST00000567738.1:ENST00000566334.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	31	2	2.26252	3.46295	4.66338	0.056222	0.0103469	0.18407	0.0850389
chr18	12876431	12876530	6950668	0	-	0.40404	(0.378,0.408]	chr18	687627	38	INTRON	INTRON	PTPN2	ENSG00000175354.20	ENST00000327283.7:ENST00000591115.5:ENST00000353319.8:ENST00000309660.10:ENST00000646492.1:ENST00000645191.1:ENST00000645816.1:ENST00000591305.5:ENST00000592776.1:ENST00000589216.1:ENST00000592059.5:ENST00000643397.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	31	2	2.26252	3.46295	4.66338	0.056222	0.0103469	0.18407	0.0850389
chr18	21554870	21554969	6954646	0	-	0.393939	(0.378,0.408]	chr18	687986	138	INTRON	INTRON	ESCO1	ENSG00000141446.11	ENST00000269214.10:ENST00000383276.1:ENST00000622333.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	31	2	2.26252	3.46295	4.66338	0.056222	0.0103469	0.18407	0.0850389
chr7	157232026	157232125	3454894	0	+	0.434343	(0.408,0.44]	chr7	323002	3	INTRON	INTRON	UBE3C	ENSG00000009335.18	ENST00000348165.10:ENST00000470408.5:ENST00000494532.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	165	2	2.90058	3.4629200000000004	4.02526	1.90873e-4	2.18038e-6	0.0126443	9.20638e-4
chr15	65791509	65791609	6209789	0	-	0.74	(0.57,1]	chr15	592618	1	SS5_PROX	SS5_PROX:INTRON	DENND4A	ENSG00000174485.16	ENST00000443035.8:ENST00000431932.6:ENST00000564674.5:ENST00000568515.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	105	2	2.89397	3.462835	4.0317	1.11276e-5	5.90388e-7	0.00263978	4.17747e-4
chr11	46587326	46587426	4947193	0	-	0.43	(0.408,0.44]	chr11	463525	379	INTRON	INTRON	AMBRA1	ENSG00000110497.15	ENST00000683756.1:ENST00000534300.5:ENST00000533727.5:ENST00000314845.7:ENST00000458649.6:ENST00000528950.1:ENST00000531542.1:ENST00000526606.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	146	2	2.7951	3.462555	4.13001	8.18693e-4	1.05444e-6	0.0264086	5.87735e-4
chr12	102120991	102121090	5204866	0	+	0.414141	(0.408,0.44]	chr12	492800	1	INTRON	INTRON	PARPBP	ENSG00000185480.12	ENST00000327680.7:ENST00000541394.5:ENST00000543784.5:ENST00000392909.7:ENST00000537257.5:ENST00000392911.6:ENST00000541668.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	90	2	3.01942	3.462445	3.90547	7.74413e-4	2.03612e-4	0.0256083	0.0129859
chr1	15897640	15897740	35164	0	+	0.46	(0.44,0.476]	chr1	4272	206	INTRON	INTRON	SPEN	ENSG00000065526.12	ENST00000673875.1:ENST00000375759.8:ENST00000438066.1:ENST00000442985.1	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	2.49112	3.4624449999999998	4.43377	0.0315968	0.0162803	0.144381	0.101453
chr15	44291254	44291354	6013090	0	+	0.46	(0.44,0.476]	chr15	572826	15	INTRON	INTRON	GOLM2	ENSG00000166734.20	ENST00000299957.11:ENST00000559222.5:ENST00000557945.5:ENST00000650436.1:ENST00000429162.2:ENST00000345795.6:ENST00000558735.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	30	2	2.49112	3.4624449999999998	4.43377	0.0315968	0.0162803	0.144381	0.101453
chr17	42296785	42296884	6611110	0	+	0.454545	(0.44,0.476]	chr17	643999	6	INTRON	INTRON	STAT5A	ENSG00000126561.18	ENST00000345506.8:ENST00000546010.6:ENST00000677893.1:ENST00000676631.1:ENST00000590726.7:ENST00000678903.1:ENST00000590949.6:ENST00000676585.1:ENST00000588868.5:ENST00000677301.1	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	2.49112	3.4624449999999998	4.43377	0.0315968	0.0162803	0.144381	0.101453
chr20	33391741	33391841	7328393	0	-	0.46	(0.44,0.476]	chr20	746277	2	SS5_PROX	SS5_PROX:INTRON	CDK5RAP1	ENSG00000101391.21	ENST00000339269.5:ENST00000357886.8:ENST00000346416.7:ENST00000473997.5:ENST00000482967.5:ENST00000481964.5:ENST00000496381.5:ENST00000460043.5:ENST00000471264.5:ENST00000477105.5:ENST00000461356.5:ENST00000488723.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	30	2	2.49112	3.4624449999999998	4.43377	0.0315968	0.0162803	0.144381	0.101453
chr5	143371498	143371598	2742208	0	-	0.47	(0.44,0.476]	chr5	258577	570	INTRON	INTRON	NR3C1	ENSG00000113580.15	ENST00000343796.6:ENST00000394464.7:ENST00000415690.6:ENST00000424646.6:ENST00000504572.5:ENST00000394466.6:ENST00000231509.7:ENST00000652686.1:ENST00000503201.1:ENST00000504336.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	30	2	2.49112	3.4624449999999998	4.43377	0.0315968	0.0162803	0.144381	0.101453
chr6	109038427	109038527	3185181	0	-	0.47	(0.44,0.476]	chr6	296634	290	INTRON	INTRON	SESN1	ENSG00000080546.14	ENST00000436639.7	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	2.49112	3.4624449999999998	4.43377	0.0315968	0.0162803	0.144381	0.101453
chr7	64693931	64694029	3320164	0	+	0.459184	(0.44,0.476]	chr7	308689	16	INTRON	INTRON	ZNF107	ENSG00000196247.13	ENST00000395391.2:ENST00000684016.1:ENST00000620827.6:ENST00000423627.6:ENST00000613690.5:ENST00000344930.7:ENST00000682671.1:ENST00000683971.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	30	2	2.49112	3.4624449999999998	4.43377	0.0315968	0.0162803	0.144381	0.101453
chr1	151414696	151414796	554499	0	-	0.53	(0.515,0.57]	chr1	65503	19	INTRON	INTRON	POGZ	ENSG00000143442.22	ENST00000271715.7:ENST00000358476.7:ENST00000392723.5:ENST00000368863.6:ENST00000409503.5:ENST00000531094.5:ENST00000491586.5:ENST00000529669.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	29	2	2.23915	3.462415	4.68568	0.0596178	0.00270027	0.16883600000000001	0.0479115
chr16	87757663	87757763	6538597	0	-	0.52	(0.515,0.57]	chr16	633567	2	SS3_PROX	SS3_PROX:INTRON	KLHDC4	ENSG00000104731.14	ENST00000567298.5:ENST00000270583.10:ENST00000347925.9:ENST00000353170.9:ENST00000562155.5:ENST00000622456.4:ENST00000562261.1:ENST00000566661.5:ENST00000564484.5:ENST00000565328.5:ENST00000569747.5:ENST00000564396.5:ENST00000568502.1:ENST00000561825.1:ENST00000568338.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	29	2	2.23915	3.462415	4.68568	0.0596178	0.00270027	0.16883600000000001	0.0479115
chr8	96652891	96652991	3804069	0	+	0.55	(0.515,0.57]	chr8	352745	71	INTRON	INTRON	CPQ	ENSG00000104324.16	ENST00000220763.10:ENST00000519900.1:ENST00000517742.1	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	2.23915	3.462415	4.68568	0.0596178	0.00270027	0.16883600000000001	0.0479115
chr6	89767590	89767689	3161500	0	-	0.474747	(0.44,0.476]	chr6	294808	47	INTRON	INTRON	MDN1	ENSG00000112159.12	ENST00000369393.8:ENST00000629399.2:ENST00000439638.1	protein_coding	protein_coding	protein_coding	protein_coding	3	91	2	2.86452	3.4623749999999998	4.06023	0.00159222	9.08057e-5	0.0367961	0.00848604
chr5	122033431	122033530	2465553	0	+	0.40404	(0.378,0.408]	chr5	236153	49	INTRON	INTRON	SRFBP1	ENSG00000151304.6	ENST00000504881.1	protein_coding	processed_transcript	protein_coding	processed_transcript	1	34	2	2.60296	3.46235	4.32174	0.0267851	0.0132362	0.123349	0.0999551
chr21	29332077	29332176	7392687	0	+	0.494949	(0.476,0.515]	chr21	753205	20	INTRON	INTRON	BACH1	ENSG00000156273.16	ENST00000286800.8:ENST00000399921.5:ENST00000422809.5:ENST00000468059.1	protein_coding	protein_coding	protein_coding	protein_coding	4	60	2	1.63187	3.46234	5.29281	0.037661	4.07635e-4	0.14058	0.0181306
chr9	112106855	112106955	4316090	0	-	0.29	(0.28,0.32]	chr9	396946	20	INTRON	INTRON	SUSD1	ENSG00000106868.17	ENST00000374270.8:ENST00000374263.7:ENST00000355396.7:ENST00000374264.6:ENST00000415074.1:ENST00000528773.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	47	2	2.1895	3.46212	4.73474	0.0227063	0.0162835	0.124921	0.101453
chr1	243238211	243238311	668548	0	-	0.42	(0.408,0.44]	chr1	79325	125	INTRON	INTRON	CEP170	ENSG00000143702.16	ENST00000366544.5:ENST00000366543.5:ENST00000366542.6:ENST00000522191.5:ENST00000523424.5:ENST00000522522.5:ENST00000522995.1:ENST00000523581.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	62	2	1.35436	3.462045	5.56973	0.0603719	3.81714e-4	0.19151	0.0181283
chr12	93488160	93488188	5189463	0	+	0.535714	(0.515,0.57]	chr12	490854	1	SS3_PROX	SS3_PROX:INTRON	MRPL42	ENSG00000198015.14	ENST00000549982.6:ENST00000552217.6:ENST00000393128.8:ENST00000552326.5:ENST00000358678.7:ENST00000547098.5:ENST00000551396.5:ENST00000549561.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	29	2	2.52504	3.46202	4.399	0.029342	0.00708863	0.128055	0.0754923
chr12	118022459	118022559	5234168	0	+	0.52	(0.515,0.57]	chr12	496525	1	SS5_PROX	SS5_PROX:INTRON	RFC5	ENSG00000111445.14	ENST00000449641.6:ENST00000537315.5:ENST00000454402.7:ENST00000392542.6	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	2.52504	3.46202	4.399	0.029342	0.00708863	0.128055	0.0754923
chr17	8470161	8470261	6555725	0	+	0.57	(0.515,0.57]	chr17	637370	21	INTRON	INTRON	NDEL1	ENSG00000166579.16	ENST00000581679.1	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	2.52504	3.46202	4.399	0.029342	0.00708863	0.128055	0.0754923
chr17	80576859	80576959	6685105	0	+	0.52	(0.515,0.57]	chr17	653399	307	INTRON	INTRON	RPTOR	ENSG00000141564.15	ENST00000574767.5:ENST00000577161.5:ENST00000306801.8:ENST00000649732.1:ENST00000570891.5:ENST00000544334.6:ENST00000573746.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	29	2	2.52504	3.46202	4.399	0.029342	0.00708863	0.128055	0.0754923
chr22	49555865	49555965	7601638	0	-	0.56	(0.515,0.57]	chr22	778566	1143	INTRON	INTRON	MIR3667HG	ENSG00000188511.13	ENST00000414287.5:ENST00000416411.1	lncRNA	lncRNA	lncRNA	lncRNA	1	29	2	2.52504	3.46202	4.399	0.029342	0.00708863	0.128055	0.0754923
chr6	82997503	82997603	3144840	0	-	0.53	(0.515,0.57]	chr6	293169	397	INTRON	INTRON	UBE3D	ENSG00000118420.17	ENST00000369747.8:ENST00000237186.10:ENST00000509102.5:ENST00000430071.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	29	2	2.52504	3.46202	4.399	0.029342	0.00708863	0.128055	0.0754923
chr6	5195562	5195662	3049425	0	-	0.5	(0.476,0.515]	chr6	283832	82	INTRON	INTRON	LYRM4	ENSG00000214113.11	ENST00000330636.9:ENST00000468929.5:ENST00000464010.5:ENST00000463032.5:ENST00000480566.5:ENST00000500576.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	53	2	1.93059	3.4620050000000004	4.99342	0.023762	0.00139274	0.118822	0.0341261
chr1	205731849	205731948	623706	0	-	0.383838	(0.378,0.408]	chr1	74198	6	INTRON	INTRON	NUCKS1	ENSG00000069275.13	ENST00000367142.5	protein_coding	protein_coding	protein_coding	protein_coding	3	92	2	3.2479	3.461995	3.67609	6.32264e-4	2.54231e-4	0.0231174	0.0142045
chr9	100330868	100330968	4308950	0	-	0.46	(0.44,0.476]	chr9	395874	3	INTRON	INTRON	TEX10	ENSG00000136891.14	ENST00000535814.5:ENST00000374902.9:ENST00000429235.1	protein_coding	protein_coding	protein_coding	protein_coding	3	89	2	3.05373	3.4619799999999996	3.87023	6.56725e-4	2.32199e-4	0.0232396	0.0139633
chr3	37126832	37126931	1656136	0	-	0.383838	(0.378,0.408]	chr3	169995	48	INTRON	INTRON	LRRFIP2	ENSG00000093167.18	ENST00000336686.9:ENST00000354379.8:ENST00000421276.6:ENST00000396428.6:ENST00000440230.5:ENST00000416425.5:ENST00000461672.5:ENST00000438374.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	50	2	2.04622	3.46192	4.87762	0.0149927	0.00553849	0.107704	0.0648867
chr16	89482446	89482546	6543521	0	-	0.52	(0.515,0.57]	chr16	634281	508	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	105	2	2.85398	3.46187	4.06976	1.24373e-4	5.5596e-5	0.00952358	0.00651834
chr19	23789655	23789755	7042702	0	+	0.43	(0.408,0.44]	chr19	702227	23	INTRON	INTRON	RPSAP58	ENSG00000288920.1	ENST00000471224.5:ENST00000692590.1:ENST00000475499.2:ENST00000686829.1:ENST00000689525.1:ENST00000691397.1:ENST00000688405.1:ENST00000687994.1:ENST00000484897.4:ENST00000685490.1:ENST00000462186.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	90	2	2.92033	3.4618599999999997	4.00339	0.00162151	7.25052e-5	0.0367655	0.00709818
chr20	35627817	35627913	7335389	0	-	0.489583	(0.476,0.515]	chr20	747242	4	SS3_PROX	SS3_PROX:INTRON	CPNE1	ENSG00000214078.13	ENST00000352393.8:ENST00000397443.7:ENST00000317677.9:ENST00000415920.5:ENST00000483359.5:ENST00000397442.5:ENST00000483495.5:ENST00000401607.6:ENST00000437340.5:ENST00000430570.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	43	2	1.86492	3.4616949999999997	5.05847	0.0550347	0.00108081	0.165463	0.0300133
chr1	23507322	23507420	400312	0	-	0.520408	(0.515,0.57]	chr1	48046	10	UTR3	UTR3:EXON_MRNA	E2F2	ENSG00000007968.7	ENST00000361729.3	protein_coding	protein_coding	protein_coding	protein_coding	9	203	2	3.18186	3.4616499999999997	3.74144	1.04004e-5	2.19866e-6	0.00235262	0.00103079
chr21	46271561	46271661	7471283	0	-	0.51	(0.476,0.515]	chr21	761667	6	INTRON	INTRON	MCM3AP	ENSG00000160294.11	ENST00000397708.1:ENST00000291688.6:ENST00000479557.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	43	2	1.92984	3.4616300000000004	4.99342	0.0466474	0.00139274	0.151522	0.0341261
chr9	37271673	37271773	4119174	0	+	0.49	(0.476,0.515]	chr9	375389	848	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000461038.5:ENST00000488607.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	43	2	1.92984	3.4616300000000004	4.99342	0.0466474	0.00139274	0.151522	0.0341261
chr9	129850614	129850709	4210603	0	+	0.484211	(0.476,0.515]	chr9	385874	3	INTRON	INTRON	USP20	ENSG00000136878.14	ENST00000491053.5:ENST00000494971.2:ENST00000372429.8:ENST00000315480.9:ENST00000358355.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	43	2	1.92984	3.4616300000000004	4.99342	0.0466474	0.00139274	0.151522	0.0341261
chr7	140923965	140924065	3663726	0	-	0.35	(0.32,0.35]	chr7	340105	734	INTRON	INTRON	BRAF	ENSG00000157764.14	ENST00000496384.7:ENST00000644969.2:ENST00000646891.1:ENST00000644905.1:ENST00000642228.1:ENST00000288602.11:ENST00000646730.1:ENST00000497784.2:ENST00000642272.1:ENST00000642808.1:ENST00000643790.1:ENST00000469930.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	61	2	1.63843	3.4614650000000005	5.2845	0.0360919	0.00240071	0.152563	0.0440612
chr1	51401837	51401934	453161	0	-	0.525773	(0.515,0.57]	chr1	54335	5	INTRON	INTRON	EPS15	ENSG00000085832.17	ENST00000371733.8:ENST00000371730.6:ENST00000486505.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	140	2	2.9506	3.46141	3.97222	9.37882e-5	2.13673e-6	0.00860621	9.07669e-4
chr11	63626159	63626257	4962361	0	-	0.5	(0.476,0.515]	chr11	467121	22	UTR3	UTR3:EXON_MRNA	ATL3	ENSG00000184743.13	ENST00000398868.8	protein_coding	protein_coding	protein_coding	protein_coding	6	138	2	2.56354	3.4610700000000003	4.3586	5.19158e-4	9.42612e-6	0.0209322	0.00222322
chr2	229909386	229909486	1341539	0	-	0.41	(0.408,0.44]	chr2	140467	3	SS3_PROX	SS3_PROX:INTRON	TRIP12	ENSG00000153827.14	ENST00000675453.1:ENST00000675903.1:ENST00000283943.9:ENST00000675423.1:ENST00000389044.8:ENST00000389045.7:ENST00000479037.5:ENST00000409677.5:ENST00000435716.5:ENST00000428959.5:ENST00000430954.5:ENST00000343290.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	56	2	1.43792	3.46104	5.48416	0.062843	5.43528e-4	0.196433	0.0215026
chr19	10972376	10972475	7015671	0	+	0.373737	(0.35,0.378]	chr19	697168	67	INTRON	INTRON	SMARCA4	ENSG00000127616.20	ENST00000644737.1:ENST00000642726.1:ENST00000646484.1:ENST00000643549.1:ENST00000643296.1:ENST00000647230.1:ENST00000642628.1:ENST00000646510.1:ENST00000429416.8:ENST00000644760.1:ENST00000344626.10:ENST00000646693.2:ENST00000645460.1:ENST00000541122.6:ENST00000589677.5:ENST00000444061.8:ENST00000590574.6	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	2.72498	3.4610399999999997	4.1971	0.0367539	0.0168499	0.138959	0.11068
chr19	46954801	46954901	7083175	0	+	0.37	(0.35,0.378]	chr19	708691	170	INTRON	INTRON	ARHGAP35	ENSG00000160007.19	ENST00000672722.1:ENST00000404338.8:ENST00000614079.1:ENST00000595822.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	32	2	2.72498	3.4610399999999997	4.1971	0.0367539	0.0168499	0.138959	0.11068
chr3	15279140	15279240	1620632	0	-	0.37	(0.35,0.378]	chr3	167619	32	INTRON	INTRON	SH3BP5	ENSG00000131370.16	ENST00000383791.8:ENST00000412806.1:ENST00000426925.5:ENST00000408919.7:ENST00000450625.1:ENST00000465894.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	32	2	2.72498	3.4610399999999997	4.1971	0.0367539	0.0168499	0.138959	0.11068
chr11	62643265	62643364	4960340	0	-	0.525253	(0.515,0.57]	chr11	466618	28	INTRON	INTRON	GANAB	ENSG00000089597.18	ENST00000346178.8:ENST00000532402.5:ENST00000356638.8:ENST00000540933.5:ENST00000648273.1:ENST00000534779.5:ENST00000534613.5:ENST00000525994.1:ENST00000526210.1:ENST00000526392.1:ENST00000529737.5:ENST00000534419.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	44	2	1.81744	3.46096	5.10448	0.031028	0.0010345	0.143457	0.029231300000000002
chr4	1218388	1218487	2094690	0	-	0.414141	(0.408,0.44]	chr4	207127	18	INTRON	INTRON	CTBP1	ENSG00000159692.16	ENST00000382952.8:ENST00000290921.10:ENST00000504092.5:ENST00000510739.1:ENST00000505826.5:ENST00000514669.5:ENST00000506180.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	54	2	1.92319	3.46078	4.99837	0.0247322	0.00131369	0.12011	0.0333932
chr12	50011333	50011433	5322534	0	-	0.35	(0.32,0.35]	chr12	507391	43	INTRON	INTRON	RACGAP1	ENSG00000161800.13	ENST00000312377.10:ENST00000427314.6:ENST00000454520.6:ENST00000551016.5:ENST00000547905.5:ENST00000548320.5:ENST00000548598.5:ENST00000552310.5:ENST00000550149.5:ENST00000546786.5:ENST00000546595.5:ENST00000551145.5:ENST00000548824.5:ENST00000548644.5:ENST00000551260.5:ENST00000546723.5:ENST00000552921.5:ENST00000548247.1:ENST00000552157.5:ENST00000546764.5:ENST00000551876.5:ENST00000549777.5:ENST00000550651.5:ENST00000552004.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	50	2	2.7493	3.460555	4.17181	0.04531	0.00296357	0.149888	0.0500135
chr16	644433	644532	6273195	0	+	0.464646	(0.44,0.476]	chr16	598786	9	INTRON	INTRON	MCRIP2	ENSG00000172366.20	ENST00000611328.4:ENST00000307650.9:ENST00000491999.5:ENST00000629534.2:ENST00000474840.5:ENST00000615744.4:ENST00000620462.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	90	2	3.09039	3.460545	3.8307	7.4601e-4	1.81621e-4	0.0251072	0.0117212
chr17	17834437	17834537	6737595	0	-	0.37	(0.35,0.378]	chr17	661170	105	INTRON	INTRON	SREBF1	ENSG00000072310.18	ENST00000261646.11:ENST00000395757.6:ENST00000355815.8	protein_coding	protein_coding	protein_coding	protein_coding	7	80	2	1.65955	3.4604000000000004	5.26125	0.0133768	0.00191117	0.10089	0.03947
chr1	21751948	21752026	396549	0	-	0.487179	(0.476,0.515]	chr1	47321	4	SS3_PROX	SS3_PROX:INTRON	USP48	ENSG00000090686.16	ENST00000400301.5:ENST00000308271.14:ENST00000529637.5:ENST00000421625.6	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	2.47949	3.460385	4.44128	0.0326974	0.0151924	0.145164	0.0994339
chr1	25226941	25227041	402227	0	-	0.5	(0.476,0.515]	chr1	48320	1	SS5_PROX	SS5_PROX:INTRON	SYF2	ENSG00000117614.10	ENST00000236273.9:ENST00000354361.3	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	2.47949	3.460385	4.44128	0.0326974	0.0151924	0.145164	0.0994339
chr10	86797191	86797291	4479803	0	+	0.51	(0.476,0.515]	chr10	412292	399	INTRON	INTRON	BMPR1A	ENSG00000107779.14	ENST00000638429.1:ENST00000372037.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	30	2	2.47949	3.460385	4.44128	0.0326974	0.0151924	0.145164	0.0994339
chr15	22797196	22797296	5976182	0	+	0.51	(0.476,0.515]	chr15	568352	100	INTRON	INTRON	NIPA1	ENSG00000170113.16	ENST00000437912.6:ENST00000561183.5:ENST00000560069.5:ENST00000337435.9:ENST00000560105.1:ENST00000559448.5:ENST00000557930.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	30	2	2.47949	3.460385	4.44128	0.0326974	0.0151924	0.145164	0.0994339
chr16	18878707	18878805	6457619	0	-	0.479592	(0.476,0.515]	chr16	622829	16	EXON_MRNA	EXON_MRNA:INTRON	SMG1	ENSG00000157106.18	ENST00000446231.7:ENST00000565324.5:ENST00000561947.5:ENST00000565224.5:ENST00000568239.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	30	2	2.47949	3.460385	4.44128	0.0326974	0.0151924	0.145164	0.0994339
chr19	16213482	16213581	7026732	0	+	0.50505	(0.476,0.515]	chr19	699349	27	INTRON	INTRON	AP1M1	ENSG00000072958.9	ENST00000590756.5:ENST00000291439.8:ENST00000429941.6:ENST00000444449.6:ENST00000591966.1:ENST00000586461.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	30	2	2.47949	3.460385	4.44128	0.0326974	0.0151924	0.145164	0.0994339
chr2	171135453	171135553	1263845	0	-	0.49	(0.476,0.515]	chr2	133921	172	INTRON	INTRON	TLK1	ENSG00000198586.14	ENST00000431350.7:ENST00000360843.7:ENST00000359766.7:ENST00000521943.5:ENST00000409443.6:ENST00000413010.5:ENST00000470340.1:ENST00000466220.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	30	2	2.47949	3.460385	4.44128	0.0326974	0.0151924	0.145164	0.0994339
chr4	39723943	39724043	1953250	0	+	0.49	(0.476,0.515]	chr4	195630	252	INTRON	INTRON	UBE2K	ENSG00000078140.14	ENST00000510934.5:ENST00000261427.10:ENST00000438068.6:ENST00000513231.5:ENST00000503368.5:ENST00000445950.2:ENST00000510719.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	30	2	2.47949	3.460385	4.44128	0.0326974	0.0151924	0.145164	0.0994339
chr6	44093485	44093585	3097806	0	-	0.5	(0.476,0.515]	chr6	290241	28	EXON_LNCRNA	EXON_LNCRNA	ENSG00000287562	ENSG00000287562.1	ENST00000664457.1	lncRNA	lncRNA	lncRNA	lncRNA	1	30	2	2.47949	3.460385	4.44128	0.0326974	0.0151924	0.145164	0.0994339
chr7	151220320	151220415	3674294	0	-	0.505263	(0.476,0.515]	chr7	341124	8	INTRON	INTRON	ABCF2-H2BE1:ABCF2	ENSG00000285292.1:ENSG00000033050.9	ENST00000222388.6:ENST00000287844.7:ENST00000473874.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	30	2	2.47949	3.460385	4.44128	0.0326974	0.0151924	0.145164	0.0994339
chr22	20857470	20857570	7559671	0	-	0.47	(0.44,0.476]	chr22	773216	184	INTRON	INTRON	PI4KA	ENSG00000241973.11	ENST00000255882.11:ENST00000485963.5:ENST00000449120.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	44	2	2.13779	3.46036	4.78293	0.0264596	0.00292033	0.122506	0.0494641
chr21	37476980	37477080	7407334	0	+	0.4	(0.378,0.408]	chr21	754906	37	INTRON	INTRON	DYRK1A	ENSG00000157540.22	ENST00000646523.1:ENST00000647425.1:ENST00000647188.2:ENST00000647504.1:ENST00000644942.1:ENST00000338785.8:ENST00000643624.1:ENST00000643551.1:ENST00000426672.6:ENST00000398960.7:ENST00000646548.1:ENST00000645424.1:ENST00000643854.1:ENST00000642309.1:ENST00000645774.1:ENST00000398956.2:ENST00000462274.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	41	2	2.11103	3.460355	4.80968	0.0266911	0.00679828	0.134419	0.0711802
chr3	41238633	41238711	1403440	0	+	0.384615	(0.378,0.408]	chr3	147478	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CTNNB1	ENSG00000168036.18	ENST00000643541.1:ENST00000645210.1:ENST00000646381.1:ENST00000405570.6:ENST00000642248.1:ENST00000433400.6:ENST00000642992.1:ENST00000431914.6:ENST00000642836.1:ENST00000396185.8:ENST00000642986.1:ENST00000644678.1:ENST00000643031.1:ENST00000396183.7:ENST00000645982.1:ENST00000453024.6:ENST00000645900.1:ENST00000647264.1:ENST00000646174.1:ENST00000643992.1:ENST00000642886.1:ENST00000647390.1:ENST00000643052.1:ENST00000349496.11:ENST00000642426.1:ENST00000646074.1:ENST00000645276.1:ENST00000646116.1:ENST00000644873.1:ENST00000644867.1:ENST00000646725.1:ENST00000645493.1:ENST00000646369.1:ENST00000643977.1:ENST00000647413.1:ENST00000644524.1:ENST00000645305.1:ENST00000643297.1:ENST00000450969.6:ENST00000642315.1:ENST00000645320.1:ENST00000441708.2:ENST00000647021.1:ENST00000471014.2:ENST00000644501.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	41	2	2.11103	3.460355	4.80968	0.0266911	0.00679828	0.134419	0.0711802
chr11	68086820	68086920	4972249	0	-	0.6	(0.57,1]	chr11	469428	39	INTRON	INTRON	CHKA	ENSG00000110721.12	ENST00000265689.9:ENST00000356135.9:ENST00000528235.5:ENST00000531341.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	77	2	3.41904	3.460325	3.50161	3.17447e-5	7.20605e-6	0.00449886	0.00201767
chr3	138758772	138758872	1830736	0	-	0.39	(0.378,0.408]	chr3	184044	2	SS5_PROX	SS5_PROX:INTRON	PIK3CB	ENSG00000051382.9	ENST00000674063.1:ENST00000289153.6:ENST00000477593.5:ENST00000462898.5:ENST00000483968.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	41	2	2.04292	3.4602700000000004	4.87762	0.0326035	0.00553849	0.145164	0.0648867
chr19	48902394	48902491	7087790	0	+	0.350515	(0.35,0.378]	chr19	709331	9	INTRON	INTRON	NUCB1	ENSG00000104805.16	ENST00000405315.9:ENST00000407032.5:ENST00000452087.5:ENST00000485798.5:ENST00000443560.1:ENST00000411700.5:ENST00000451312.5:ENST00000424608.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	53	2	2.20096	3.4602449999999996	4.71953	0.0103314	0.0087123	0.0850389	0.0844834
chr16	23641890	23641990	6323238	0	+	0.52	(0.515,0.57]	chr16	605579	3	SS5_PROX	SS5_PROX:INTRON	DCTN5	ENSG00000166847.10	ENST00000300087.7:ENST00000563998.5:ENST00000566053.5:ENST00000568589.5:ENST00000563188.5:ENST00000568272.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	143	2	2.80304	3.460165	4.11729	1.68851e-4	1.35573e-6	0.0112811	7.5792e-4
chr1	29181145	29181245	410437	0	-	0.59	(0.57,1]	chr1	49422	1	SS5_PROX	SS5_PROX:INTRON	SRSF4	ENSG00000116350.18	ENST00000373795.7:ENST00000691479.1:ENST00000466448.4:ENST00000605204.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	20	275	2	3.3997	3.460145	3.52059	5.46056e-9	2.13276e-9	2.4377e-5	8.86366e-6
chr10	125063023	125063123	4713359	0	-	0.67	(0.57,1]	chr10	434897	235	INTRON	INTRON	CTBP2	ENSG00000175029.17	ENST00000337195.9:ENST00000411419.6:ENST00000494626.6:ENST00000531469.5:ENST00000460976.5:ENST00000476817.1:ENST00000530884.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	38	2	3.22856	3.46012	3.69168	0.00205928	2.1608e-4	0.0420839	0.0134537
chr12	121309400	121309500	5436732	0	-	0.41	(0.408,0.44]	chr12	519842	3	SS5_PROX	SS5_PROX:INTRON	ANAPC5	ENSG00000089053.13	ENST00000261819.8:ENST00000422342.2:ENST00000535641.5:ENST00000541887.5:ENST00000534976.5:ENST00000441917.6:ENST00000539079.5:ENST00000544314.5:ENST00000535482.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	33	2	2.58624	3.46012	4.334	0.0273686	0.011982	0.123904	0.0962115
chr15	50424654	50424754	6022216	0	+	0.43	(0.408,0.44]	chr15	573924	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	USP8	ENSG00000138592.14	ENST00000560297.5:ENST00000396444.7:ENST00000560954.5:ENST00000425032.7:ENST00000558892.1:ENST00000307179.9:ENST00000559329.5:ENST00000560885.5:ENST00000560730.5:ENST00000625664.2:ENST00000560982.5:ENST00000561211.5	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:nonsense_mediated_decay:processed_transcript	1	33	2	2.58624	3.46012	4.334	0.0273686	0.011982	0.123904	0.0962115
chr2	97240265	97240365	832167	0	+	0.44	(0.408,0.44]	chr2	93233	60	INTRON	INTRON	ANKRD36	ENSG00000135976.21	ENST00000420699.9:ENST00000652721.1:ENST00000461153.7:ENST00000421946.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	33	2	2.58624	3.46012	4.334	0.0273686	0.011982	0.123904	0.0962115
chr9	136028166	136028266	4372795	0	-	0.41	(0.408,0.44]	chr9	402584	88	INTRON	INTRON	NACC2	ENSG00000148411.8	ENST00000277554.4:ENST00000371753.5	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	2.58624	3.46012	4.334	0.0273686	0.011982	0.123904	0.0962115
chr19	13838440	13838539	7143304	0	-	0.545455	(0.515,0.57]	chr19	721118	147	EXON_LNCRNA	EXON_LNCRNA	MIR23AHG	ENSG00000267519.6	ENST00000587762.2	lncRNA	lncRNA	lncRNA	lncRNA	3	77	2	2.9572600000000002	3.4600400000000002	3.96282	0.00108918	7.05073e-5	0.0303873	0.00694412
chr12	120553729	120553829	5235961	0	+	0.37	(0.35,0.378]	chr12	496871	4	SS3_PROX	SS3_PROX:INTRON	RNF10	ENSG00000022840.17	ENST00000325954.9:ENST00000542438.1:ENST00000538796.5:ENST00000413266.6:ENST00000551139.6:ENST00000536869.5:ENST00000543578.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	67	2	1.81752	3.45989	5.10226	0.0130467	0.00327038	0.0994973	0.0508595
chr16	85476199	85476299	6414592	0	+	0.61	(0.57,1]	chr16	615465	1169	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	5	68	2	2.34135	3.4598699999999996	4.57839	0.00191867	5.97765e-7	0.0405205	4.5217e-4
chr10	96065388	96065488	4673477	0	-	0.41	(0.408,0.44]	chr10	430643	221	INTRON	INTRON	ENTPD1-AS1	ENSG00000226688.8	ENST00000669711.1:ENST00000416301.5:ENST00000451364.5:ENST00000671323.1:ENST00000656604.1:ENST00000452728.5:ENST00000684888.1:ENST00000454638.5:ENST00000668038.1:ENST00000686747.1:ENST00000693608.1:ENST00000458228.5:ENST00000691417.1:ENST00000427846.1	lncRNA	lncRNA	lncRNA	lncRNA	1	30	2	2.49258	3.459855	4.42713	0.0314608	0.0173083	0.144381	0.104099
chr11	12988663	12988760	4916067	0	-	0.412371	(0.408,0.44]	chr11	460685	2	SS3_PROX	SS3_PROX:INTRON	LINC00958	ENSG00000251381.8	ENST00000658243.1:ENST00000527945.2:ENST00000671253.1:ENST00000653758.1:ENST00000662291.1:ENST00000671577.1:ENST00000663902.1:ENST00000653958.1:ENST00000526388.2:ENST00000504230.2:ENST00000531402.6:ENST00000534477.6:ENST00000653981.1:ENST00000667588.1	lncRNA	lncRNA	lncRNA	lncRNA	1	30	2	2.49258	3.459855	4.42713	0.0314608	0.0173083	0.144381	0.104099
chr11	57304852	57304950	4952686	0	-	0.438776	(0.408,0.44]	chr11	464753	15	INTRON	INTRON	TNKS1BP1	ENSG00000149115.14	ENST00000528882.5:ENST00000358252.8:ENST00000532437.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	30	2	2.49258	3.459855	4.42713	0.0314608	0.0173083	0.144381	0.104099
chr12	53571603	53571703	5328467	0	-	0.43	(0.408,0.44]	chr12	508398	186	INTRON	INTRON	ATF7	ENSG00000170653.19	ENST00000548446.6:ENST00000420353.7:ENST00000456903.8:ENST00000588232.5:ENST00000551480.2:ENST00000588078.5:ENST00000591397.1:ENST00000548118.6	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	2.49258	3.459855	4.42713	0.0314608	0.0173083	0.144381	0.104099
chr12	95299190	95299287	5192944	0	+	0.42268	(0.408,0.44]	chr12	491104	2	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	VEZT	ENSG00000028203.19	ENST00000547997.5:ENST00000548838.5:ENST00000436874.6:ENST00000552660.5:ENST00000551994.5:ENST00000550106.5:ENST00000551695.5:ENST00000397792.8:ENST00000356859.8:ENST00000552306.1:ENST00000546951.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	30	2	2.49258	3.459855	4.42713	0.0314608	0.0173083	0.144381	0.104099
chr16	2544113	2544212	6278922	0	+	0.424242	(0.408,0.44]	chr16	600618	47	INTRON	INTRON	PDPK1	ENSG00000140992.19	ENST00000566659.1:ENST00000441549.7:ENST00000268673.11:ENST00000474706.6:ENST00000342085.9:ENST00000570136.5:ENST00000492021.6:ENST00000389224.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	30	2	2.49258	3.459855	4.42713	0.0314608	0.0173083	0.144381	0.104099
chr5	57224182	57224281	2358559	0	+	0.434343	(0.408,0.44]	chr5	227575	24	INTRON	INTRON	GPBP1	ENSG00000062194.16	ENST00000424459.7:ENST00000514387.6:ENST00000506184.7:ENST00000511209.5:ENST00000264779.6	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	2.49258	3.459855	4.42713	0.0314608	0.0173083	0.144381	0.104099
chr7	127987451	127987551	3405776	0	+	0.44	(0.408,0.44]	chr7	318177	379	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000486037.1:ENST00000484767.5:ENST00000492840.1:ENST00000470723.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	30	2	2.49258	3.459855	4.42713	0.0314608	0.0173083	0.144381	0.104099
chr4	53381489	53381585	1959483	0	+	0.260417	[0,0.28]	chr4	196398	19	INTRON	INTRON	FIP1L1	ENSG00000145216.16	ENST00000337488.11:ENST00000511376.5:ENST00000358575.9:ENST00000507922.5:ENST00000306932.10:ENST00000505125.5:ENST00000513975.5:ENST00000510668.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	41	2	2.20927	3.45972	4.71017	0.0794763	0.0114708	0.19979	0.0956037
chr6	75652783	75652883	2905465	0	+	0.26	[0,0.28]	chr6	274530	46	INTRON	INTRON	SENP6	ENSG00000112701.18	ENST00000370010.6:ENST00000447266.7:ENST00000327284.12:ENST00000483859.6:ENST00000424947.6:ENST00000436928.7:ENST00000485497.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	41	2	2.20927	3.45972	4.71017	0.0794763	0.0114708	0.19979	0.0956037
chr16	11754842	11754941	6445250	0	-	0.454545	(0.44,0.476]	chr16	620856	10	INTRON	INTRON	ZC3H7A	ENSG00000122299.12	ENST00000396516.6:ENST00000575984.1:ENST00000571405.5:ENST00000355758.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	30	2	2.58033	3.45966	4.33899	0.0247511	0.0206616	0.131869	0.110999
chr16	11839294	11839394	6445766	0	-	0.45	(0.44,0.476]	chr16	620987	2	SS5_PROX	SS5_PROX:INTRON	RSL1D1	ENSG00000171490.13	ENST00000571133.6:ENST00000396503.7:ENST00000573618.5:ENST00000355674.9:ENST00000573029.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	30	2	2.58033	3.45966	4.33899	0.0247511	0.0206616	0.131869	0.110999
chr16	29921756	29921853	6471980	0	-	0.453608	(0.44,0.476]	chr16	625365	23	UTR3	UTR3:EXON_MRNA:INTRON	KCTD13	ENSG00000174943.11	ENST00000308768.9:ENST00000568000.6:ENST00000566842.5:ENST00000568995.1:ENST00000563264.1:ENST00000566413.1:ENST00000561540.2:ENST00000648037.1:ENST00000567795.3:ENST00000649581.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	30	2	2.58033	3.45966	4.33899	0.0247511	0.0206616	0.131869	0.110999
chr16	29962512	29962606	6336126	0	+	0.457447	(0.44,0.476]	chr16	606964	4	SS5_PROX	SS5_PROX:INTRON	TMEM219	ENSG00000149932.17	ENST00000414689.6:ENST00000279396.11:ENST00000575829.6:ENST00000561899.6:ENST00000570255.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	30	2	2.58033	3.45966	4.33899	0.0247511	0.0206616	0.131869	0.110999
chr16	68088783	68088867	6370257	0	+	0.452381	(0.44,0.476]	chr16	612185	2	EXON_LNCRNA	EXON_LNCRNA:INTRON	ENSG00000261864:NFATC3	ENSG00000261864.1:ENSG00000072736.19	ENST00000548144.1:ENST00000563319.5:ENST00000569766.5:ENST00000553077.5:ENST00000566301.5:ENST00000549350.5:ENST00000566893.5:ENST00000575270.5:ENST00000561714.5:ENST00000346183.8:ENST00000568466.6:ENST00000539828.6:ENST00000562171.1:ENST00000349223.9:ENST00000329524.8:ENST00000379165.8:ENST00000562926.5:ENST00000570212.5:ENST00000563796.5:ENST00000567152.5:ENST00000563288.5:ENST00000535127.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA:processed_transcript	1	30	2	2.58033	3.45966	4.33899	0.0247511	0.0206616	0.131869	0.110999
chr17	47489055	47489155	6789791	0	-	0.47	(0.44,0.476]	chr17	669674	1	SS3_PROX	SS3_PROX:INTRON	MRPL45P2	ENSG00000228782.8	ENST00000425159.7:ENST00000575291.5:ENST00000572695.5:ENST00000573318.1:ENST00000691039.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	1	30	2	2.58033	3.45966	4.33899	0.0247511	0.0206616	0.131869	0.110999
chr18	9555520	9555620	6945705	0	-	0.45	(0.44,0.476]	chr18	686951	17	INTRON	INTRON	PPP4R1	ENSG00000154845.16	ENST00000400555.7:ENST00000400556.8:ENST00000285124.12:ENST00000584754.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	30	2	2.58033	3.45966	4.33899	0.0247511	0.0206616	0.131869	0.110999
chr3	125515135	125515234	1807814	0	-	0.464646	(0.44,0.476]	chr3	181558	100	INTRON	INTRON	SNX4	ENSG00000114520.11	ENST00000251775.9:ENST00000471751.5:ENST00000473417.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	30	2	2.58033	3.45966	4.33899	0.0247511	0.0206616	0.131869	0.110999
chr5	138896187	138896287	2498758	0	+	0.45	(0.44,0.476]	chr5	238800	46	INTRON	INTRON	CTNNA1	ENSG00000044115.21	ENST00000627109.2:ENST00000521724.5:ENST00000302763.12:ENST00000518825.5:ENST00000520400.5:ENST00000518381.5:ENST00000522013.5:ENST00000523298.5:ENST00000523685.5:ENST00000517533.5:ENST00000521683.5:ENST00000519116.5:ENST00000522052.5:ENST00000540387.5:ENST00000517904.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	30	2	2.58033	3.45966	4.33899	0.0247511	0.0206616	0.131869	0.110999
chr5	177152598	177152698	2553888	0	+	0.47	(0.44,0.476]	chr5	243927	153	INTRON	INTRON	NSD1	ENSG00000165671.22	ENST00000508896.6:ENST00000689549.1:ENST00000354179.9:ENST00000686993.1:ENST00000689326.1:ENST00000439151.7:ENST00000510954.6:ENST00000689345.1:ENST00000347982.9:ENST00000687453.1:ENST00000685206.1:ENST00000638627.3:ENST00000644863.2:ENST00000688613.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	30	2	2.58033	3.45966	4.33899	0.0247511	0.0206616	0.131869	0.110999
chr8	53973846	53973945	3952807	0	-	0.454545	(0.44,0.476]	chr8	362510	30	INTRON	INTRON	TCEA1	ENSG00000187735.15	ENST00000396401.7:ENST00000521604.7:ENST00000521086.6:ENST00000522635.5:ENST00000522397.5:ENST00000640382.1:ENST00000640041.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	30	2	2.58033	3.45966	4.33899	0.0247511	0.0206616	0.131869	0.110999
chr9	128971919	128972012	4208105	0	+	0.462366	(0.44,0.476]	chr9	385302	6	INTRON	INTRON	NUP188	ENSG00000095319.14	ENST00000372577.2	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	2.58033	3.45966	4.33899	0.0247511	0.0206616	0.131869	0.110999
chr20	34286034	34286134	7329693	0	-	0.5	(0.476,0.515]	chr20	746548	4	SS3_PROX	SS3_PROX:INTRON	AHCY	ENSG00000101444.13	ENST00000217426.7:ENST00000538132.1:ENST00000480653.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	33	2	2.69967	3.4596549999999997	4.21964	0.0195838	0.0167715	0.110511	0.109483
chr13	19724155	19724255	5552352	0	-	0.36	(0.35,0.378]	chr13	530696	142	INTRON	INTRON	PSPC1	ENSG00000121390.19	ENST00000471658.5:ENST00000492741.5:ENST00000635562.1:ENST00000338910.9:ENST00000619300.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	152	2	2.99689	3.459535	3.92218	2.32637e-4	3.23681e-5	0.013966	0.00453487
chr7	128583282	128583382	3407881	0	+	0.32	(0.28,0.32]	chr7	318358	28	INTRON	INTRON	ENSG00000280828:ENSG00000242588	ENSG00000280828.1:ENSG00000242588.6	ENST00000479267.2:ENST00000605862.5	lncRNA	lncRNA	lncRNA:unprocessed_pseudogene	lncRNA:unprocessed_pseudogene	3	56	2	1.71442	3.45951	5.2046	0.0454351	0.00448664	0.164236	0.0593175
chr15	23027509	23027609	6120606	0	-	0.47	(0.44,0.476]	chr15	582789	2	SS3_PROX	SS3_PROX:INTRON	TUBGCP5	ENSG00000275835.5	ENST00000614508.4:ENST00000615383.5:ENST00000620435.4:ENST00000612085.4:ENST00000622507.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	30	2	2.39604	3.4593700000000003	4.5227	0.0404291	0.0128818	0.161534	0.0926667
chr15	64352131	64352230	6204792	0	-	0.444444	(0.44,0.476]	chr15	591778	39	INTRON	INTRON	CSNK1G1:ENSG00000259316	ENSG00000169118.18:ENSG00000259316.12	ENST00000303052.13:ENST00000607537.6:ENST00000634654.1:ENST00000634811.1:ENST00000634251.1:ENST00000634847.3:ENST00000635529.1:ENST00000634318.1:ENST00000635160.1:ENST00000635704.1:ENST00000634529.1:ENST00000635511.1:ENST00000635605.1:ENST00000635593.1:ENST00000634259.2:ENST00000560278.2:ENST00000635413.1:ENST00000634538.1:ENST00000635320.1:ENST00000558783.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	30	2	2.39604	3.4593700000000003	4.5227	0.0404291	0.0128818	0.161534	0.0926667
chr17	40036654	40036753	6767761	0	-	0.444444	(0.44,0.476]	chr17	665829	1	INTRON	INTRON	MED24	ENSG00000008838.21	ENST00000394126.5:ENST00000356271.7:ENST00000394128.7:ENST00000394127.6:ENST00000535508.6:ENST00000501516.7:ENST00000535071.6:ENST00000580885.5:ENST00000578901.1:ENST00000428757.6:ENST00000580008.5:ENST00000479829.5:ENST00000543759.6:ENST00000585306.5:ENST00000537674.6:ENST00000582023.5:ENST00000580517.5:ENST00000578161.2:ENST00000581054.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	30	2	2.39604	3.4593700000000003	4.5227	0.0404291	0.0128818	0.161534	0.0926667
chr17	62614995	62615092	6654280	0	+	0.453608	(0.44,0.476]	chr17	649455	26	UTR3	UTR3:EXON_MRNA	TLK2	ENSG00000146872.19	ENST00000682085.1:ENST00000346027.10:ENST00000682203.1:ENST00000683536.1:ENST00000684440.1:ENST00000684772.1:ENST00000682274.1:ENST00000682075.1:ENST00000683104.1:ENST00000684012.1:ENST00000684553.1:ENST00000683737.1:ENST00000684133.1:ENST00000682149.1:ENST00000580203.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	30	2	2.39604	3.4593700000000003	4.5227	0.0404291	0.0128818	0.161534	0.0926667
chr19	24063615	24063715	7044164	0	+	0.47	(0.44,0.476]	chr19	702366	4	SS3_PROX	SS3_PROX:INTRON	ENSG00000268362:ZNF254	ENSG00000268362.6:ENSG00000213096.11	ENST00000664647.1:ENST00000613065.4:ENST00000666101.1:ENST00000653003.1:ENST00000666488.1:ENST00000594934.6:ENST00000654353.1:ENST00000662140.1:ENST00000668060.1:ENST00000660137.1:ENST00000652968.1:ENST00000670905.1:ENST00000658858.1:ENST00000654594.1:ENST00000654372.1:ENST00000652837.1:ENST00000654611.1:ENST00000597683.1:ENST00000671141.1:ENST00000653308.1:ENST00000661386.1:ENST00000668656.1:ENST00000663903.1:ENST00000668169.1:ENST00000663458.1:ENST00000662903.1:ENST00000665638.1:ENST00000668701.1:ENST00000655664.1:ENST00000666861.1:ENST00000664627.1:ENST00000661650.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	1	30	2	2.39604	3.4593700000000003	4.5227	0.0404291	0.0128818	0.161534	0.0926667
chr2	218584611	218584666	1018354	0	+	0.472727	(0.44,0.476]	chr2	108451	1	CDS	CDS:UTR3:EXON_MRNA	CNOT9	ENSG00000144580.14	ENST00000627282.2:ENST00000542068.5:ENST00000273064.11:ENST00000432877.5:ENST00000295701.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	30	2	2.39604	3.4593700000000003	4.5227	0.0404291	0.0128818	0.161534	0.0926667
chr5	37355306	37355405	2602608	0	-	0.454545	(0.44,0.476]	chr5	247509	21	INTRON	INTRON	NUP155	ENSG00000113569.16	ENST00000231498.8:ENST00000381843.6:ENST00000513532.1	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	2.39604	3.4593700000000003	4.5227	0.0404291	0.0128818	0.161534	0.0926667
chr6	20653874	20653974	2829580	0	+	0.46	(0.44,0.476]	chr6	265655	41	INTRON	INTRON	CDKAL1	ENSG00000145996.11	ENST00000274695.8:ENST00000378610.1	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	2.39604	3.4593700000000003	4.5227	0.0404291	0.0128818	0.161534	0.0926667
chr6	29616650	29616749	3076353	0	-	0.454545	(0.44,0.476]	chr6	286064	28	INTRON	INTRON	GABBR1	ENSG00000204681.11	ENST00000355973.7:ENST00000472823.5:ENST00000377016.8:ENST00000377012.8:ENST00000377034.9:ENST00000491829.5:ENST00000494877.5:ENST00000376977.7:ENST00000494634.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	30	2	2.39604	3.4593700000000003	4.5227	0.0404291	0.0128818	0.161534	0.0926667
chr7	102132973	102133073	3369532	0	+	0.46	(0.44,0.476]	chr7	315274	73	INTRON	INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000560541.5:ENST00000558836.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	30	2	2.39604	3.4593700000000003	4.5227	0.0404291	0.0128818	0.161534	0.0926667
chr8	140719121	140719218	4077208	0	-	0.443299	(0.44,0.476]	chr8	370377	5	INTRON	INTRON	PTK2	ENSG00000169398.20	ENST00000696786.1:ENST00000522684.5:ENST00000395218.3:ENST00000519654.5:ENST00000521059.5:ENST00000517887.5:ENST00000519465.5:ENST00000519993.5:ENST00000340930.7:ENST00000523539.5:ENST00000519419.5:ENST00000524202.5:ENST00000521986.5:ENST00000522424.5:ENST00000521250.5:ENST00000521981.5:ENST00000521029.5:ENST00000518509.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	30	2	2.39604	3.4593700000000003	4.5227	0.0404291	0.0128818	0.161534	0.0926667
chr15	56927594	56927694	6032201	0	+	0.29	(0.28,0.32]	chr15	574663	61	INTRON	INTRON	TCF12	ENSG00000140262.18	ENST00000438423.6:ENST00000267811.9:ENST00000333725.10:ENST00000560190.5:ENST00000559609.5:ENST00000558908.5:ENST00000557843.5:ENST00000557947.5:ENST00000561152.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	83	2	3.2685	3.45933	3.65016	0.00432734	6.39301e-4	0.0579331	0.0228666
chr1	182867343	182867443	273274	0	+	0.28	[0,0.28]	chr1	31932	3	SS5_PROX	SS5_PROX:INTRON	DHX9	ENSG00000135829.17	ENST00000367549.4	protein_coding	protein_coding	protein_coding	protein_coding	3	127	2	3.29408	3.459095	3.62411	0.00157815	3.71636e-4	0.0362091	0.0173669
chr5	27486243	27486341	2329731	0	+	0.22449	[0,0.28]	chr5	225117	2	INTRON	INTRON	PURPL	ENSG00000250337.8	ENST00000651409.1:ENST00000650981.1:ENST00000655107.1:ENST00000657375.2:ENST00000659077.1:ENST00000653835.1:ENST00000657173.1:ENST00000514844.6:ENST00000657424.1:ENST00000660307.1:ENST00000669423.1:ENST00000652841.1:ENST00000686605.1:ENST00000690628.1:ENST00000510165.6:ENST00000670554.1:ENST00000665451.1:ENST00000667624.1:ENST00000667420.1:ENST00000660639.1:ENST00000668406.1:ENST00000656783.1:ENST00000664566.1:ENST00000659489.1:ENST00000667264.1:ENST00000654039.1:ENST00000505775.5:ENST00000668103.1:ENST00000664501.1:ENST00000661698.1:ENST00000655438.1:ENST00000658312.1	lncRNA	lncRNA	lncRNA	lncRNA	3	127	2	3.29408	3.459095	3.62411	0.00157815	3.71636e-4	0.0362091	0.0173669
chr11	664178	664278	4889165	0	-	0.36	(0.35,0.378]	chr11	457709	40	INTRON	INTRON	DEAF1	ENSG00000177030.19	ENST00000382409.4:ENST00000527170.5:ENST00000685854.1:ENST00000683307.1:ENST00000528864.6:ENST00000525626.6:ENST00000682936.1:ENST00000690068.1:ENST00000692634.1:ENST00000687329.1:ENST00000686001.1:ENST00000689835.1:ENST00000525904.5:ENST00000530813.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	72	2	3.2953	3.45901	3.62272	0.0031465	5.64719e-4	0.0500431	0.021704
chr15	90975797	90975891	6259462	0	-	0.468085	(0.44,0.476]	chr15	597299	7	INTRON	INTRON	PRC1:ENSG00000284946	ENSG00000198901.14:ENSG00000284946.1	ENST00000394249.8:ENST00000361188.9:ENST00000643536.1:ENST00000555455.5:ENST00000442656.6:ENST00000559828.1:ENST00000559326.1:ENST00000560914.1:ENST00000647331.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	32	2	2.29842	3.45898	4.61954	0.0552483	0.00506805	0.165463	0.0646039
chr16	50278048	50278146	6348709	0	+	0.469388	(0.44,0.476]	chr16	609388	35	INTRON	INTRON	ADCY7	ENSG00000121281.13	ENST00000564965.5:ENST00000564044.5:ENST00000394697.7:ENST00000673801.1:ENST00000566433.6:ENST00000568933.1:ENST00000563677.1:ENST00000566761.2:ENST00000673973.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	32	2	2.29842	3.45898	4.61954	0.0552483	0.00506805	0.165463	0.0646039
chr16	89650861	89650961	6543717	0	-	0.47	(0.44,0.476]	chr16	634322	2	SS5_PROX	SS5_PROX:INTRON	CHMP1A	ENSG00000131165.16	ENST00000675909.1:ENST00000397901.8:ENST00000676355.1:ENST00000675161.1:ENST00000676402.1:ENST00000675016.1:ENST00000551981.6:ENST00000675309.1:ENST00000675952.1:ENST00000535997.7:ENST00000674799.1:ENST00000675536.1:ENST00000549328.2:ENST00000675778.1:ENST00000676118.1:ENST00000675076.1:ENST00000550102.5:ENST00000547614.5:ENST00000550872.1:ENST00000675942.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	32	2	2.29842	3.45898	4.61954	0.0552483	0.00506805	0.165463	0.0646039
chr7	72891510	72891610	3329913	0	+	0.46	(0.44,0.476]	chr7	309564	4	SS5_PROX	SS5_PROX:INTRON	POM121	ENSG00000196313.13	ENST00000627934.3:ENST00000395270.5	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	2.29842	3.45898	4.61954	0.0552483	0.00506805	0.165463	0.0646039
chr10	6106647	6106738	4385871	0	+	0.296703	(0.28,0.32]	chr10	404785	4	SS5_PROX	SS5_PROX:INTRON	RBM17	ENSG00000134453.16	ENST00000379888.9:ENST00000437845.6:ENST00000432931.5:ENST00000446108.5:ENST00000418631.5:ENST00000447032.1	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	2.67453	3.458865	4.2432	0.0479043	0.021289	0.153019	0.123318
chr15	63585515	63585615	6042736	0	+	0.3	(0.28,0.32]	chr15	575454	108	INTRON	INTRON	USP3	ENSG00000140455.17	ENST00000540797.5:ENST00000380324.8:ENST00000558157.5:ENST00000559873.5:ENST00000559192.5:ENST00000268049.11:ENST00000558285.5:ENST00000559257.5:ENST00000538686.6:ENST00000559711.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	35	2	2.67453	3.458865	4.2432	0.0479043	0.021289	0.153019	0.123318
chr17	63817338	63817426	6661426	0	+	0.284091	(0.28,0.32]	chr17	650043	4	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DDX42	ENSG00000198231.14	ENST00000578681.5:ENST00000583590.5:ENST00000389924.7:ENST00000359353.9:ENST00000584010.5:ENST00000578593.1:ENST00000579539.1:ENST00000582985.1:ENST00000581767.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	35	2	2.67453	3.458865	4.2432	0.0479043	0.021289	0.153019	0.123318
chr19	55103208	55103308	7212545	0	-	0.32	(0.28,0.32]	chr19	732366	4	SS5_PROX	SS5_PROX:INTRON	PPP1R12C	ENSG00000125503.13	ENST00000263433.8:ENST00000435544.6:ENST00000592993.1	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	2.67453	3.458865	4.2432	0.0479043	0.021289	0.153019	0.123318
chr2	68185174	68185273	1145845	0	-	0.292929	(0.28,0.32]	chr2	122371	38	INTRON	INTRON	PPP3R1	ENSG00000221823.11	ENST00000234310.8:ENST00000409752.5:ENST00000409377.1	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	2.67453	3.458865	4.2432	0.0479043	0.021289	0.153019	0.123318
chr4	39926593	39926674	2131690	0	-	0.222222	[0,0.28]	chr4	210231	3	SS5_PROX	SS5_PROX:INTRON	PDS5A	ENSG00000121892.15	ENST00000303538.13:ENST00000503396.5:ENST00000513798.1	protein_coding	protein_coding	protein_coding	protein_coding	2	54	2	2.45042	3.4588399999999995	4.46726	0.0427997	0.010819	0.148082	0.0920575
chr1	229303805	229303904	333610	0	+	0.383838	(0.378,0.408]	chr1	38856	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	RAB4A	ENSG00000168118.12	ENST00000618010.4:ENST00000366690.5:ENST00000473894.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	33	2	2.2259	3.4587950000000003	4.69169	0.0662381	0.00432302	0.181924	0.0599409
chr17	35590226	35590326	6599562	0	+	0.38	(0.378,0.408]	chr17	642225	11	INTRON	INTRON	AP2B1	ENSG00000006125.18	ENST00000589774.5:ENST00000616784.4:ENST00000621914.4:ENST00000620039.4:ENST00000616681.4:ENST00000621668.4:ENST00000610402.5:ENST00000612035.4:ENST00000591610.5:ENST00000590538.5:ENST00000614600.4:ENST00000590432.5:ENST00000612116.5:ENST00000618940.4:ENST00000588093.1:ENST00000592167.5:ENST00000593014.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	33	2	2.2259	3.4587950000000003	4.69169	0.0662381	0.00432302	0.181924	0.0599409
chr19	1583680	1583780	7112429	0	-	0.39	(0.378,0.408]	chr19	714526	3	SS3_PROX	SS3_PROX:INTRON	MBD3:ENSG00000267059	ENSG00000071655.18:ENSG00000267059.2	ENST00000434436.8:ENST00000156825.5:ENST00000590550.6:ENST00000592012.5:ENST00000589064.5:ENST00000590830.5:ENST00000585937.1:ENST00000585903.1:ENST00000585967.5:ENST00000592361.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	33	2	2.2259	3.4587950000000003	4.69169	0.0662381	0.00432302	0.181924	0.0599409
chr19	52082610	52082709	7205735	0	-	0.40404	(0.378,0.408]	chr19	731297	52	INTRON	INTRON	ZNF432:ZNF841	ENSG00000256087.7:ENSG00000197608.12	ENST00000598446.1:ENST00000594440.6:ENST00000426391.6:ENST00000594295.5:ENST00000389534.8:ENST00000599430.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	33	2	2.2259	3.4587950000000003	4.69169	0.0662381	0.00432302	0.181924	0.0599409
chr7	73520129	73520228	3555079	0	-	0.494949	(0.476,0.515]	chr7	330813	89	INTRON	INTRON	BAZ1B	ENSG00000009954.11	ENST00000339594.9:ENST00000404251.1	protein_coding	protein_coding	protein_coding	protein_coding	4	118	2	3.29959	3.45873	3.61787	2.65033e-4	3.07966e-5	0.0149989	0.004431
chr15	42508658	42508757	6009731	0	+	0.393939	(0.378,0.408]	chr15	572147	31	INTRON	INTRON	SNAP23	ENSG00000092531.10	ENST00000568745.5:ENST00000561526.5:ENST00000568227.5:ENST00000568451.5:ENST00000563765.5:ENST00000349777.5:ENST00000249647.8:ENST00000564153.5:ENST00000567094.5:ENST00000566327.5:ENST00000568331.5:ENST00000563451.1:ENST00000626061.2:ENST00000627440.2:ENST00000566035.5:ENST00000568859.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	33	2	2.30961	3.45866	4.60771	0.055088	0.00567576	0.165463	0.0678837
chr16	88608333	88608433	6418645	0	+	0.39	(0.378,0.408]	chr16	615820	80	INTRON	INTRON	ZC3H18	ENSG00000158545.16	ENST00000301011.10:ENST00000452588.6:ENST00000567085.1:ENST00000568072.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	33	2	2.30961	3.45866	4.60771	0.055088	0.00567576	0.165463	0.0678837
chr5	179807599	179807691	2561507	0	+	0.391304	(0.378,0.408]	chr5	244994	4	EXON_LNCRNA	EXON_LNCRNA:INTRON	SQSTM1	ENSG00000161011.20	ENST00000506042.5:ENST00000514093.5:ENST00000506690.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	33	2	2.30961	3.45866	4.60771	0.055088	0.00567576	0.165463	0.0678837
chr10	74051326	74051425	4455035	0	+	0.515152	(0.476,0.515]	chr10	411397	78	INTRON	INTRON	VCL	ENSG00000035403.18	ENST00000623461.3:ENST00000372755.7:ENST00000624354.3:ENST00000211998.10:ENST00000478896.2:ENST00000461383.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	43	2	1.99197	3.4586300000000003	4.92529	0.039572	0.00180221	0.143072	0.0392772
chr20	58998505	58998597	7359432	0	-	0.478261	(0.476,0.515]	chr20	750521	7	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	CTSZ	ENSG00000101160.15	ENST00000681011.1:ENST00000680879.1:ENST00000680753.1:ENST00000681877.1:ENST00000681175.1:ENST00000681457.1:ENST00000680263.1:ENST00000681416.1:ENST00000488395.2:ENST00000217131.6:ENST00000680283.1:ENST00000681664.1:ENST00000680738.1:ENST00000680206.1:ENST00000680456.1:ENST00000681427.1:ENST00000681366.1:ENST00000680628.1:ENST00000680300.1:ENST00000680565.1:ENST00000681360.1:ENST00000680995.1:ENST00000679948.1:ENST00000679991.1:ENST00000679391.1:ENST00000681029.1:ENST00000503833.7:ENST00000681797.1:ENST00000680880.1:ENST00000680386.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:non_stop_decay:nonsense_mediated_decay:processed_transcript	2	43	2	1.99197	3.4586300000000003	4.92529	0.039572	0.00180221	0.143072	0.0392772
chr3	47118551	47118651	1681145	0	-	0.53	(0.515,0.57]	chr3	171605	14	INTRON	INTRON	SETD2	ENSG00000181555.22	ENST00000691544.1:ENST00000638947.2:ENST00000686876.1:ENST00000431180.5:ENST00000409792.4:ENST00000330022.11:ENST00000686773.1:ENST00000685005.1:ENST00000690461.1:ENST00000685505.1:ENST00000692883.1:ENST00000693321.1:ENST00000688290.1:ENST00000691902.1:ENST00000690157.1:ENST00000445387.5:ENST00000685399.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	28	2	2.83188	3.45863	4.08538	0.0253843	0.0108207	0.12011	0.0920575
chr8	102861741	102861839	4013216	0	-	0.540816	(0.515,0.57]	chr8	367346	22	INTRON	INTRON	AZIN1	ENSG00000155096.15	ENST00000681985.1:ENST00000684566.1:ENST00000682725.1:ENST00000337198.10:ENST00000684459.1:ENST00000683787.1:ENST00000682014.1:ENST00000682969.1:ENST00000684721.1:ENST00000683965.1:ENST00000347770.8:ENST00000520402.5:ENST00000518353.5:ENST00000517581.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	28	2	2.83188	3.45863	4.08538	0.0253843	0.0108207	0.12011	0.0920575
chr2	58193669	58193764	1126265	0	-	0.368421	(0.35,0.378]	chr2	120911	4	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	FANCL	ENSG00000115392.13	ENST00000696400.1:ENST00000403295.8:ENST00000696492.1:ENST00000427708.7:ENST00000696314.1:ENST00000696315.1:ENST00000696454.1:ENST00000696508.1:ENST00000696548.1:ENST00000696542.1:ENST00000696432.1:ENST00000696319.1:ENST00000403676.6:ENST00000696433.1:ENST00000696434.1:ENST00000696499.1:ENST00000696564.1:ENST00000402135.8:ENST00000696546.1:ENST00000233741.9:ENST00000696316.1:ENST00000696378.1:ENST00000696435.1:ENST00000696493.1:ENST00000696543.1:ENST00000696544.1:ENST00000696545.1:ENST00000696565.1:ENST00000696620.1:ENST00000696621.1:ENST00000696635.1:ENST00000696364.1:ENST00000696634.1:ENST00000696317.1:ENST00000696622.1:ENST00000696467.1:ENST00000696547.1:ENST00000449070.6:ENST00000696305.1:ENST00000417361.2:ENST00000696338.1:ENST00000696361.1:ENST00000696318.1:ENST00000696371.1:ENST00000696409.1:ENST00000696410.1:ENST00000696455.1:ENST00000696468.1:ENST00000696527.1:ENST00000696567.1:ENST00000696324.1:ENST00000696566.1:ENST00000696623.1:ENST00000446381.6:ENST00000696469.1:ENST00000696624.1:ENST00000696411.1:ENST00000696475.1:ENST00000470506.2:ENST00000696358.1:ENST00000696373.1:ENST00000696394.1:ENST00000696320.1:ENST00000696339.1:ENST00000696395.1:ENST00000696341.1:ENST00000696340.1:ENST00000696374.1:ENST00000696396.1:ENST00000696342.1:ENST00000696325.1:ENST00000696399.1:ENST00000696398.1:ENST00000696306.1:ENST00000696397.1:ENST00000696360.1:ENST00000696344.1:ENST00000696343.1:ENST00000696637.1:ENST00000696362.1:ENST00000696528.1:ENST00000696497.1:ENST00000696326.1:ENST00000696638.1:ENST00000696625.1:ENST00000696510.1:ENST00000696438.1:ENST00000696496.1:ENST00000696509.1:ENST00000696569.1:ENST00000696457.1:ENST00000696458.1:ENST00000696473.1:ENST00000696495.1:ENST00000696415.1:ENST00000696472.1:ENST00000696494.1:ENST00000696363.1:ENST00000696414.1:ENST00000696459.1:ENST00000696498.1:ENST00000696416.1:ENST00000696530.1:ENST00000696460.1:ENST00000696570.1:ENST00000696531.1:ENST00000696307.1:ENST00000696401.1:ENST00000696345.1:ENST00000696377.1:ENST00000696417.1:ENST00000696594.1:ENST00000696595.1:ENST00000696379.1:ENST00000696346.1:ENST00000696380.1:ENST00000696347.1:ENST00000696461.1:ENST00000696596.1:ENST00000696549.1:ENST00000696597.1:ENST00000696550.1:ENST00000696598.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	198	2	2.90447	3.45859	4.01271	5.74798e-5	7.95866e-6	0.00620217	0.00213244
chr1	153876027	153876127	557296	0	-	0.5	(0.476,0.515]	chr1	65983	473	INTRON	INTRON	GATAD2B	ENSG00000143614.10	ENST00000368655.5:ENST00000634544.1:ENST00000634408.1:ENST00000634401.1:ENST00000634791.1:ENST00000636014.1:ENST00000637331.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	32	2	2.13854	3.45855	4.77856	0.0776563	0.00305743	0.196285	0.0509893
chr17	62531890	62531990	6653417	0	+	0.49	(0.476,0.515]	chr17	649344	72	INTRON	INTRON	TLK2	ENSG00000146872.19	ENST00000582809.5:ENST00000684213.1:ENST00000583843.5:ENST00000582195.6:ENST00000682085.1:ENST00000580705.5:ENST00000346027.10:ENST00000326270.13:ENST00000682203.1:ENST00000343388.11:ENST00000683536.1:ENST00000684440.1:ENST00000684772.1:ENST00000682274.1:ENST00000682827.1:ENST00000682075.1:ENST00000683104.1:ENST00000684012.1:ENST00000581041.5:ENST00000684553.1:ENST00000683737.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	32	2	2.13854	3.45855	4.77856	0.0776563	0.00305743	0.196285	0.0509893
chr3	177176604	177176704	1872240	0	-	0.49	(0.476,0.515]	chr3	187438	53	INTRON	INTRON	TBL1XR1	ENSG00000177565.18	ENST00000457928.7:ENST00000430069.5:ENST00000673974.1:ENST00000352800.10:ENST00000422442.6:ENST00000428970.5:ENST00000424913.5:ENST00000437738.5:ENST00000431421.5:ENST00000635794.1:ENST00000630796.2:ENST00000450267.5:ENST00000630833.2:ENST00000431674.5:ENST00000422066.5:ENST00000443315.5:ENST00000627825.2:ENST00000427349.5:ENST00000413084.5:ENST00000637137.1:ENST00000491623.2:ENST00000637544.1:ENST00000636187.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	32	2	2.13854	3.45855	4.77856	0.0776563	0.00305743	0.196285	0.0509893
chr4	53430482	53430582	1959986	0	+	0.5	(0.476,0.515]	chr4	196458	19	INTRON	INTRON	FIP1L1	ENSG00000145216.16	ENST00000337488.11:ENST00000358575.9:ENST00000306932.10:ENST00000505125.5:ENST00000513975.5:ENST00000514543.5:ENST00000513008.5:ENST00000504094.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	32	2	2.13854	3.45855	4.77856	0.0776563	0.00305743	0.196285	0.0509893
chr8	48041147	48041247	3752564	0	+	0.49	(0.476,0.515]	chr8	349050	57	INTRON	INTRON	UBE2V2	ENSG00000169139.12	ENST00000523432.5:ENST00000521346.5:ENST00000523111.7:ENST00000518360.5:ENST00000517630.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	32	2	2.13854	3.45855	4.77856	0.0776563	0.00305743	0.196285	0.0509893
chr8	67082153	67082253	3776804	0	+	0.5	(0.476,0.515]	chr8	350263	23	INTRON	INTRON	CSPP1	ENSG00000104218.16	ENST00000676113.1:ENST00000675306.2:ENST00000678156.1:ENST00000262210.11:ENST00000678017.1:ENST00000675869.1:ENST00000521919.6:ENST00000678542.1:ENST00000677619.1:ENST00000676605.1:ENST00000676471.1:ENST00000677256.1:ENST00000676847.1:ENST00000677009.1:ENST00000675820.1:ENST00000676317.1:ENST00000677592.1:ENST00000676573.1:ENST00000678318.1:ENST00000677473.1:ENST00000674993.1:ENST00000678553.1:ENST00000678927.1:ENST00000678204.1:ENST00000679226.1:ENST00000676882.1:ENST00000675955.1:ENST00000678728.1:ENST00000677430.1:ENST00000677455.1:ENST00000677071.1:ENST00000678616.1:ENST00000678362.1:ENST00000679112.1:ENST00000678645.1:ENST00000676567.1:ENST00000677845.1:ENST00000519701.5:ENST00000519163.6:ENST00000676858.1:ENST00000678747.1:ENST00000678821.1:ENST00000678744.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	32	2	2.13854	3.45855	4.77856	0.0776563	0.00305743	0.196285	0.0509893
chr14	75106277	75106371	5924092	0	-	0.510638	(0.476,0.515]	chr14	563085	4	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NEK9	ENSG00000119638.14	ENST00000238616.10:ENST00000678531.1:ENST00000678037.1:ENST00000678749.1:ENST00000557026.5:ENST00000677700.1:ENST00000556170.5:ENST00000553823.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	88	2	3.14363	3.458485	3.77334	4.25082e-4	3.52709e-4	0.018441	0.0174637
chr1	207726607	207726707	304778	0	+	0.31	(0.28,0.32]	chr1	35076	15	INTRON	INTRON	CR1L	ENSG00000197721.17	ENST00000294997.10	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	1	40	2	2.67975	3.45847	4.23719	0.0264147	0.0252505	0.133676	0.12011
chr11	87152443	87152543	4843959	0	+	0.48	(0.476,0.515]	chr11	451856	607	INTRON	INTRON	TMEM135	ENSG00000166575.17	ENST00000340353.11:ENST00000529023.5:ENST00000526733.5:ENST00000305494.6:ENST00000532959.5:ENST00000525018.5:ENST00000531800.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	32	2	2.48527	3.4581	4.43093	0.03496	0.00931369	0.13747500000000001	0.0855292
chr17	61792597	61792697	6808218	0	-	0.48	(0.476,0.515]	chr17	672569	78	INTRON	INTRON	BRIP1	ENSG00000136492.10	ENST00000259008.7:ENST00000682755.1:ENST00000682453.1:ENST00000683039.1:ENST00000682989.1:ENST00000682589.1:ENST00000683235.1:ENST00000682477.1:ENST00000684584.1:ENST00000577598.5:ENST00000682066.1:ENST00000584322.2:ENST00000683381.1:ENST00000579028.2:ENST00000682611.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	32	2	2.48527	3.4581	4.43093	0.03496	0.00931369	0.13747500000000001	0.0855292
chr19	53078010	53078109	7210308	0	-	0.50505	(0.476,0.515]	chr19	731876	2	INTRON	INTRON	ZNF160	ENSG00000170949.18	ENST00000599056.5:ENST00000418871.5:ENST00000429604.5:ENST00000683776.1:ENST00000599247.5:ENST00000601982.5:ENST00000355147.9:ENST00000599729.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	32	2	2.48527	3.4581	4.43093	0.03496	0.00931369	0.13747500000000001	0.0855292
chr4	2007380	2007462	2096037	0	-	0.487805	(0.476,0.515]	chr4	207413	2	SS3_PROX	SS3_PROX:INTRON	NELFA	ENSG00000185049.16	ENST00000542778.5:ENST00000382882.9:ENST00000333877.8:ENST00000431323.6:ENST00000455762.5:ENST00000421397.5:ENST00000411649.3:ENST00000443203.5:ENST00000458616.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	32	2	2.48527	3.4581	4.43093	0.03496	0.00931369	0.13747500000000001	0.0855292
chr5	65578923	65579016	2368792	0	+	0.505376	(0.476,0.515]	chr5	228257	1	SS3_PROX	SS3_PROX:INTRON	PPWD1	ENSG00000113593.12	ENST00000535264.5:ENST00000538977.5:ENST00000261308.10:ENST00000510930.5:ENST00000511908.5:ENST00000514172.1:ENST00000511334.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	32	2	2.48527	3.4581	4.43093	0.03496	0.00931369	0.13747500000000001	0.0855292
chr8	104528515	104528614	4014116	0	-	0.494949	(0.476,0.515]	chr8	367433	191	INTRON	INTRON	LRP12	ENSG00000147650.12	ENST00000424843.6:ENST00000276654.10:ENST00000520770.1:ENST00000519675.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	32	2	2.48527	3.4581	4.43093	0.03496	0.00931369	0.13747500000000001	0.0855292
chr2	107717747	107717846	1205727	0	-	0.393939	(0.378,0.408]	chr2	128532	1	INTRON	INTRON	LINC01885:ENSG00000286769	ENSG00000237880.2:ENSG00000286769.1	ENST00000654481.1:ENST00000669817.1	lncRNA	lncRNA	lncRNA	lncRNA	4	126	2	3.33592	3.457945	3.57997	1.591e-4	7.44563e-5	0.0108481	0.00773104
chr10	49996223	49996322	4433192	0	+	0.30303	(0.28,0.32]	chr10	408764	14	INTRON	INTRON	TIMM23B-AGAP6:AGAP6	ENSG00000178440.8:ENSG00000204149.15	ENST00000651763.1:ENST00000651208.1:ENST00000618025.4:ENST00000374056.10:ENST00000679810.1:ENST00000412531.7:ENST00000618171.5:ENST00000680115.1:ENST00000311652.10:ENST00000679578.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	38	2	2.39347	3.4579000000000004	4.52233	0.0504457	0.0129279	0.156383	0.0990564
chr2	9629958	9630058	1064974	0	-	0.54	(0.515,0.57]	chr2	113607	4	SS5_PROX	SS5_PROX:INTRON	YWHAQ	ENSG00000134308.14	ENST00000238081.8:ENST00000381844.8:ENST00000446619.1:ENST00000460093.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	59	2	3.25412	3.457815	3.66151	0.00224554	4.49566e-4	0.0435144	0.0196044
chrX	123637542	123637642	7878081	0	-	0.52	(0.515,0.57]	chrX	802496	1	SS5_PROX	SS5_PROX:INTRON	THOC2	ENSG00000125676.20	ENST00000245838.13:ENST00000355725.8:ENST00000491737.5	protein_coding	protein_coding	protein_coding	protein_coding	2	59	2	3.25412	3.457815	3.66151	0.00224554	4.49566e-4	0.0435144	0.0196044
chr19	57257675	57257774	7103471	0	+	0.363636	(0.35,0.378]	chr19	712838	31	UTR3	UTR3:EXON_MRNA	ZNF805	ENSG00000204524.7	ENST00000414468.3	protein_coding	protein_coding	protein_coding	protein_coding	3	98	2	3.07438	3.45779	3.8412	9.54868e-4	1.97447e-4	0.0282401	0.0122531
chr4	99032357	99032455	2003081	0	+	0.469388	(0.44,0.476]	chr4	199823	3	INTRON	INTRON	METAP1	ENSG00000164024.12	ENST00000510209.5:ENST00000296411.11:ENST00000507537.5:ENST00000506238.5:ENST00000503247.5:ENST00000510107.5:ENST00000513199.5:ENST00000506548.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	121	2	2.78097	3.457775	4.13458	2.31078e-4	6.18626e-5	0.0134209	0.00694613
chr5	119316302	119316402	2462074	0	+	0.45	(0.44,0.476]	chr5	235846	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	TNFAIP8	ENSG00000145779.8	ENST00000274456.6:ENST00000388882.5	protein_coding	protein_coding	protein_coding	protein_coding	2	46	2	2.38519	3.457765	4.53034	0.012193	0.00672609	0.0910127	0.0738715
chr1	11082533	11082623	376716	0	-	0.522222	(0.515,0.57]	chr1	44017	1	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	EXOSC10	ENSG00000171824.14	ENST00000304457.11:ENST00000376936.9:ENST00000485606.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	28	2	2.23241	3.4577549999999997	4.6831	0.0581268	0.00471288	0.188651	0.0600108
chr17	44149327	44149427	6615545	0	+	0.54	(0.515,0.57]	chr17	645085	3	SS5_PROX	SS5_PROX:INTRON	HROB	ENSG00000125319.15	ENST00000319977.8:ENST00000585683.6:ENST00000245382.6:ENST00000588434.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	28	2	2.23241	3.4577549999999997	4.6831	0.0581268	0.00471288	0.188651	0.0600108
chr2	240553532	240553627	1346620	0	-	0.547368	(0.515,0.57]	chr2	141257	6	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	ANKMY1	ENSG00000144504.16	ENST00000361678.8:ENST00000391987.5:ENST00000401804.6:ENST00000272972.7:ENST00000406958.5:ENST00000373318.6:ENST00000403283.5:ENST00000405523.7:ENST00000405002.5:ENST00000484526.5:ENST00000459901.5:ENST00000496300.5:ENST00000441168.5:ENST00000443318.1:ENST00000462004.5:ENST00000418708.3:ENST00000418505.3:ENST00000464991.5:ENST00000477316.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	28	2	2.23241	3.4577549999999997	4.6831	0.0581268	0.00471288	0.188651	0.0600108
chr22	29529832	29529925	7574593	0	-	0.537634	(0.515,0.57]	chr22	774702	2	INTRON	INTRON	THOC5	ENSG00000100296.14	ENST00000490103.6:ENST00000397871.5:ENST00000397872.5:ENST00000442555.5:ENST00000358079.8:ENST00000397873.6:ENST00000484924.5:ENST00000443089.5:ENST00000492707.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	28	2	2.23241	3.4577549999999997	4.6831	0.0581268	0.00471288	0.188651	0.0600108
chr8	8883275	8883374	3907507	0	-	0.525253	(0.515,0.57]	chr8	358045	234	INTRON	INTRON	MFHAS1	ENSG00000147324.11	ENST00000276282.7	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	2.23241	3.4577549999999997	4.6831	0.0581268	0.00471288	0.188651	0.0600108
chr10	46803532	46803631	4430893	0	+	0.484848	(0.476,0.515]	chr10	408546	12	INTRON	INTRON	BMS1P1	ENSG00000204177.11	ENST00000580094.5:ENST00000688259.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	2	66	2	3.29074	3.45769	3.62464	0.00272563	5.079e-4	0.0467523	0.0202328
chr4	2496409	2496506	1912101	0	+	0.484536	(0.476,0.515]	chr4	191933	13	INTRON	INTRON	RNF4	ENSG00000063978.16	ENST00000503659.5:ENST00000504224.5:ENST00000541204.5:ENST00000502316.5:ENST00000509388.5:ENST00000507247.5:ENST00000314289.13:ENST00000511843.5:ENST00000509258.5:ENST00000513284.5:ENST00000507784.5:ENST00000513578.5:ENST00000511859.5:ENST00000511892.5:ENST00000513643.5:ENST00000503123.5:ENST00000509206.1:ENST00000506706.5:ENST00000511600.5:ENST00000513450.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	66	2	3.29074	3.45769	3.62464	0.00272563	5.079e-4	0.0467523	0.0202328
chr14	26892053	26892153	5663269	0	+	0.33	(0.32,0.35]	chr14	540167	107	INTRON	INTRON	ENSG00000258081:MIR4307HG	ENSG00000258081.4:ENSG00000257612.2	ENST00000656336.1:ENST00000550024.1:ENST00000552303.1:ENST00000664825.1:ENST00000657233.1:ENST00000661570.1:ENST00000548170.2:ENST00000654842.1:ENST00000657558.1:ENST00000656237.1:ENST00000667739.1:ENST00000654874.1:ENST00000658815.1:ENST00000667676.1:ENST00000658149.1:ENST00000666037.1:ENST00000666377.1:ENST00000655440.1:ENST00000666571.1:ENST00000653927.1:ENST00000669484.1:ENST00000663099.1:ENST00000653481.1:ENST00000667699.1:ENST00000668735.1:ENST00000656692.1:ENST00000662028.1	lncRNA	lncRNA	lncRNA	lncRNA	2	44	2	2.01768	3.45768	4.89768	0.0361337	0.00793135	0.152563	0.076155
chr19	43839916	43840012	7075670	0	+	0.34375	(0.32,0.35]	chr19	707312	20	INTRON	INTRON	ZNF283	ENSG00000167637.18	ENST00000618787.5:ENST00000588797.6:ENST00000650832.1:ENST00000586976.5:ENST00000590950.5:ENST00000593268.5:ENST00000324461.9	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	44	2	2.01768	3.45768	4.89768	0.0361337	0.00793135	0.152563	0.076155
chr13	97224831	97224931	5518423	0	+	0.38	(0.378,0.408]	chr13	527710	19	INTRON	INTRON	MBNL2	ENSG00000139793.20	ENST00000397601.5:ENST00000343600.9:ENST00000376673.8:ENST00000679496.1:ENST00000685165.1:ENST00000345429.10:ENST00000469707.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	32	2	2.92665	3.4576599999999997	3.98867	0.0507	0.0086017	0.156383	0.083729
chr12	132827267	132827367	5450209	0	-	0.49	(0.476,0.515]	chr12	522121	3	SS3_PROX	SS3_PROX:SS5_PROX:INTRON	GOLGA3:CHFR	ENSG00000090615.16:ENSG00000072609.18	ENST00000204726.9:ENST00000450791.8:ENST00000688114.1:ENST00000691696.1:ENST00000691636.1:ENST00000690897.1:ENST00000456883.7:ENST00000545875.4:ENST00000688251.1:ENST00000686751.1:ENST00000685580.1:ENST00000687165.1:ENST00000692384.1:ENST00000685120.1:ENST00000689813.1:ENST00000693112.1:ENST00000685450.1:ENST00000534967.2:ENST00000537317.2:ENST00000690178.1:ENST00000541341.5:ENST00000692289.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	66	2	3.37632	3.457635	3.53895	0.00195267	0.00075485700000000005	0.0400465	0.0251966
chr1	39863210	39863310	428068	0	-	0.48	(0.476,0.515]	chr1	52020	54	INTRON	INTRON	TRIT1	ENSG00000043514.17	ENST00000316891.10:ENST00000648678.1:ENST00000537440.5:ENST00000372818.5:ENST00000462797.5:ENST00000441669.6:ENST00000495175.6:ENST00000491865.5:ENST00000541099.5:ENST00000492612.6:ENST00000489945.5:ENST00000486825.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	30	2	2.56868	3.45758	4.34648	0.0256676	0.0193566	0.133676	0.108861
chr11	65200187	65200287	4804574	0	+	0.51	(0.476,0.515]	chr11	446277	111	INTRON	INTRON	CAPN1	ENSG00000014216.16	ENST00000533820.5:ENST00000533129.5:ENST00000524773.5:ENST00000279247.11:ENST00000527323.5:ENST00000533079.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	30	2	2.56868	3.45758	4.34648	0.0256676	0.0193566	0.133676	0.108861
chr13	112550568	112550667	5651335	0	-	0.50505	(0.476,0.515]	chr13	538494	20	INTRON	INTRON	TUBGCP3	ENSG00000126216.15	ENST00000261965.8:ENST00000649778.1:ENST00000375669.7:ENST00000464139.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	30	2	2.56868	3.45758	4.34648	0.0256676	0.0193566	0.133676	0.108861
chr16	12743915	12744015	6447260	0	-	0.49	(0.476,0.515]	chr16	621153	385	INTRON	INTRON	CPPED1	ENSG00000103381.12	ENST00000381774.9:ENST00000433677.6:ENST00000261660.4	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	2.56868	3.45758	4.34648	0.0256676	0.0193566	0.133676	0.108861
chr16	16019618	16019718	6308462	0	+	0.48	(0.476,0.515]	chr16	603534	26	INTRON	INTRON	ABCC1	ENSG00000103222.20	ENST00000574224.2:ENST00000678422.1:ENST00000677164.1:ENST00000399408.7:ENST00000572882.3:ENST00000399410.8:ENST00000679043.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	30	2	2.56868	3.45758	4.34648	0.0256676	0.0193566	0.133676	0.108861
chr19	37644299	37644395	7178349	0	-	0.489583	(0.476,0.515]	chr19	725381	3	SS5_PROX	SS5_PROX:INTRON	ZFP30	ENSG00000120784.17	ENST00000589018.5:ENST00000684514.1:ENST00000351218.6:ENST00000514101.6:ENST00000587809.5:ENST00000588979.5	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	2.56868	3.45758	4.34648	0.0256676	0.0193566	0.133676	0.108861
chr22	42594251	42594349	7594814	0	-	0.479592	(0.476,0.515]	chr22	777845	18	INTRON	INTRON	POLDIP3	ENSG00000100227.19	ENST00000348657.6:ENST00000252115.10:ENST00000445215.5:ENST00000451060.6:ENST00000339677.10:ENST00000491021.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	30	2	2.56868	3.45758	4.34648	0.0256676	0.0193566	0.133676	0.108861
chr22	46737206	46737306	7600198	0	-	0.5	(0.476,0.515]	chr22	778530	13	INTRON	INTRON	CERK	ENSG00000100422.14	ENST00000216264.13:ENST00000443629.5:ENST00000460254.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	30	2	2.56868	3.45758	4.34648	0.0256676	0.0193566	0.133676	0.108861
chr6	160066183	160066281	3023978	0	+	0.510204	(0.476,0.515]	chr6	282173	9	INTRON	INTRON	IGF2R	ENSG00000197081.16	ENST00000676781.1:ENST00000677704.1:ENST00000356956.6:ENST00000650503.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	30	2	2.56868	3.45758	4.34648	0.0256676	0.0193566	0.133676	0.108861
chr7	24617953	24618053	3291162	0	+	0.48	(0.476,0.515]	chr7	305717	204	INTRON	INTRON	PALS2	ENSG00000105926.16	ENST00000432190.5:ENST00000409761.5:ENST00000222644.10:ENST00000396475.6:ENST00000430180.5:ENST00000426450.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	30	2	2.56868	3.45758	4.34648	0.0256676	0.0193566	0.133676	0.108861
chr7	150270352	150270452	3673118	0	-	0.51	(0.476,0.515]	chr7	340876	209	INTRON	INTRON	ACTR3C	ENSG00000106526.11	ENST00000478393.5:ENST00000683684.1:ENST00000252071.8	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	2.56868	3.45758	4.34648	0.0256676	0.0193566	0.133676	0.108861
chr2	30576762	30576862	728122	0	+	0.25	[0,0.28]	chr2	84017	82	INTRON	INTRON	LCLAT1	ENSG00000172954.14	ENST00000319406.8:ENST00000379509.8:ENST00000491680.6:ENST00000309052.8:ENST00000478015.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	42	2	2.44242	3.4574800000000003	4.47254	0.0491024	0.020991	0.155269	0.122348
chr1	70206976	70207076	142442	0	+	0.49	(0.476,0.515]	chr1	15965	8	INTRON	INTRON	SRSF11	ENSG00000116754.14	ENST00000370951.5:ENST00000463877.1:ENST00000687381.1:ENST00000370950.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	30	2	2.38442	3.457325	4.53023	0.0417472	0.0119748	0.161736	0.0899583
chr11	46434028	46434128	4945640	0	-	0.48	(0.476,0.515]	chr11	463436	4	SS3_PROX	SS3_PROX:INTRON	AMBRA1	ENSG00000110497.15	ENST00000683756.1:ENST00000534300.5:ENST00000533727.5:ENST00000314845.7:ENST00000458649.6:ENST00000528950.1	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	2.38442	3.457325	4.53023	0.0417472	0.0119748	0.161736	0.0899583
chr12	111473032	111473131	5411943	0	-	0.494949	(0.476,0.515]	chr12	516831	12	INTRON	INTRON	ATXN2	ENSG00000204842.18	ENST00000642389.2:ENST00000608853.5:ENST00000672613.1:ENST00000673436.1:ENST00000643669.2:ENST00000389154.7:ENST00000616825.4:ENST00000389153.10:ENST00000550104.5:ENST00000483311.6:ENST00000672335.1:ENST00000492467.6:ENST00000673557.1:ENST00000673283.1:ENST00000673273.1:ENST00000673449.1:ENST00000535949.5:ENST00000542287.6:ENST00000643474.1:ENST00000643694.1:ENST00000645162.1:ENST00000551755.6:ENST00000644883.1:ENST00000647305.1:ENST00000495342.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	30	2	2.38442	3.457325	4.53023	0.0417472	0.0119748	0.161736	0.0899583
chr2	111442219	111442319	1211273	0	-	0.51	(0.476,0.515]	chr2	128903	7	INTRON	INTRON	MIR4435-2HG	ENSG00000172965.17	ENST00000645030.2:ENST00000642191.1:ENST00000673798.1:ENST00000645051.2:ENST00000673649.1:ENST00000669658.1:ENST00000669917.1:ENST00000661559.1:ENST00000653687.1:ENST00000667670.1:ENST00000609220.2:ENST00000656760.1:ENST00000609902.6:ENST00000666683.1:ENST00000674070.1:ENST00000662335.1:ENST00000664422.1:ENST00000673775.1:ENST00000674092.1:ENST00000673958.1:ENST00000658936.1:ENST00000662635.1:ENST00000666204.1:ENST00000659458.1:ENST00000664443.1:ENST00000670295.1:ENST00000661655.1:ENST00000666390.1:ENST00000659079.1:ENST00000660442.1:ENST00000664009.1:ENST00000439362.6:ENST00000654473.1:ENST00000664999.1:ENST00000673728.1:ENST00000659791.1:ENST00000666144.1:ENST00000659933.1:ENST00000670715.1:ENST00000653568.1:ENST00000643013.1:ENST00000673866.1:ENST00000443467.6:ENST00000669875.1:ENST00000673653.1:ENST00000673988.1:ENST00000661945.1:ENST00000669515.1:ENST00000431385.6:ENST00000656416.1:ENST00000674037.1:ENST00000432818.5:ENST00000674013.1:ENST00000444301.5:ENST00000673964.1:ENST00000673845.1:ENST00000673756.1:ENST00000673960.1:ENST00000673804.1:ENST00000673632.1:ENST00000453478.2:ENST00000673937.1:ENST00000673654.1:ENST00000409569.2:ENST00000674087.1:ENST00000419736.5:ENST00000673840.1:ENST00000674045.1:ENST00000673821.1:ENST00000643766.1:ENST00000308604.5:ENST00000674026.1:ENST00000604981.5:ENST00000673894.1:ENST00000442293.5:ENST00000441075.1	lncRNA	lncRNA	lncRNA	lncRNA	1	30	2	2.38442	3.457325	4.53023	0.0417472	0.0119748	0.161736	0.0899583
chr2	230744443	230744543	1030475	0	+	0.48	(0.476,0.515]	chr2	110002	300	INTRON	INTRON	CAB39	ENSG00000135932.12	ENST00000258418.10:ENST00000409788.7:ENST00000410084.7	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	2.38442	3.457325	4.53023	0.0417472	0.0119748	0.161736	0.0899583
chr20	36577762	36577858	7265875	0	+	0.489583	(0.476,0.515]	chr20	738334	10	INTRON	INTRON	TGIF2	ENSG00000118707.11	ENST00000373874.6:ENST00000373872.9:ENST00000650844.1:ENST00000611732.4:ENST00000558028.5:ENST00000560025.1	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	2.38442	3.457325	4.53023	0.0417472	0.0119748	0.161736	0.0899583
chr5	61020624	61020724	2359974	0	+	0.48	(0.476,0.515]	chr5	227644	748	INTRON	INTRON	NDUFAF2	ENSG00000164182.12	ENST00000678452.1:ENST00000677756.1:ENST00000296597.10:ENST00000511107.1:ENST00000677932.1:ENST00000502658.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	30	2	2.38442	3.457325	4.53023	0.0417472	0.0119748	0.161736	0.0899583
chr5	132915263	132915363	2724779	0	-	0.5	(0.476,0.515]	chr5	256321	105	INTRON	INTRON	AFF4	ENSG00000072364.13	ENST00000265343.10:ENST00000378595.7:ENST00000425658.1:ENST00000378593.6:ENST00000477369.5:ENST00000491831.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	30	2	2.38442	3.457325	4.53023	0.0417472	0.0119748	0.161736	0.0899583
chr5	180852360	180852460	2783469	0	-	0.5	(0.476,0.515]	chr5	262835	3	SS3_PROX	SS3_PROX:INTRON	ZFP62	ENSG00000196670.14	ENST00000506377.5:ENST00000502412.2:ENST00000512132.5:ENST00000504225.1:ENST00000506439.5:ENST00000509066.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	30	2	2.38442	3.457325	4.53023	0.0417472	0.0119748	0.161736	0.0899583
chr6	16138875	16138974	2825871	0	+	0.484848	(0.476,0.515]	chr6	265309	78	INTRON	INTRON	MYLIP	ENSG00000007944.15	ENST00000356840.8:ENST00000349606.4	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	2.38442	3.457325	4.53023	0.0417472	0.0119748	0.161736	0.0899583
chr6	43043930	43044030	3095809	0	-	0.49	(0.476,0.515]	chr6	289718	3	SS3_PROX	SS3_PROX:INTRON	CUL7	ENSG00000044090.13	ENST00000265348.9:ENST00000690231.1:ENST00000685042.1:ENST00000689256.1:ENST00000674112.2:ENST00000674134.1:ENST00000478630.2:ENST00000674100.1:ENST00000686442.1:ENST00000688302.1:ENST00000673725.1:ENST00000673753.1:ENST00000687225.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	30	2	2.38442	3.457325	4.53023	0.0417472	0.0119748	0.161736	0.0899583
chr9	71899049	71899148	4266014	0	-	0.50505	(0.476,0.515]	chr9	392609	236	INTRON	INTRON	ABHD17B	ENSG00000107362.14	ENST00000377041.6:ENST00000333421.7	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	2.38442	3.457325	4.53023	0.0417472	0.0119748	0.161736	0.0899583
chr1	154239324	154239423	227719	0	+	0.363636	(0.35,0.378]	chr1	26269	18	INTRON	INTRON	UBAP2L	ENSG00000143569.19	ENST00000343815.10:ENST00000271877.11:ENST00000613315.4:ENST00000412596.5:ENST00000368504.5:ENST00000428931.6:ENST00000437652.5:ENST00000361546.6	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	2.24535	3.45732	4.66929	0.0647516	0.00541617	0.179192	0.066545000000000007
chr7	131377284	131377383	3416937	0	+	0.373737	(0.35,0.378]	chr7	319193	14	INTRON	INTRON	MKLN1	ENSG00000128585.18	ENST00000421797.6:ENST00000416992.6:ENST00000429546.5:ENST00000446815.5:ENST00000494286.5:ENST00000352689.11:ENST00000494785.5:ENST00000458153.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	34	2	2.24535	3.45732	4.66929	0.0647516	0.00541617	0.179192	0.066545000000000007
chr9	120435684	120435784	4332409	0	-	0.36	(0.35,0.378]	chr9	397994	126	INTRON	INTRON	CDK5RAP2	ENSG00000136861.19	ENST00000349780.9:ENST00000360190.8:ENST00000687279.1:ENST00000687633.1:ENST00000684780.1:ENST00000687311.1:ENST00000479584.2:ENST00000690814.1:ENST00000686842.1:ENST00000691551.1:ENST00000693714.1:ENST00000693386.1:ENST00000692746.1:ENST00000686376.1:ENST00000692155.1:ENST00000690646.1:ENST00000693433.1:ENST00000688923.1:ENST00000473282.6:ENST00000480112.5:ENST00000685866.1:ENST00000689688.1:ENST00000416449.6:ENST00000691504.1:ENST00000425647.1:ENST00000360822.8:ENST00000693728.1:ENST00000483412.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	34	2	2.24535	3.45732	4.66929	0.0647516	0.00541617	0.179192	0.066545000000000007
chrX	3842039	3842139	7747001	0	-	0.43	(0.408,0.44]	chrX	793085	123	INTRON	INTRON	ENSG00000285756	ENSG00000285756.2	ENST00000648217.1:ENST00000425492.5:ENST00000662024.1:ENST00000490920.2:ENST00000475317.5:ENST00000671583.1	lncRNA	lncRNA	lncRNA	lncRNA	3	53	2	1.78881	3.457245	5.12568	0.0370259	7.90919e-4	0.139194	0.0258324
chr17	37313755	37313855	6762113	0	-	0.4	(0.378,0.408]	chr17	664944	141	INTRON	INTRON	ACACA	ENSG00000278540.5	ENST00000616317.5:ENST00000614428.4:ENST00000613146.4:ENST00000615229.4:ENST00000621960.1:ENST00000617548.1:ENST00000616352.4:ENST00000614789.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	41	2	2.17608	3.457235	4.73839	0.0218783	0.00837252	0.123836	0.0774402
chr17	59838021	59838112	6643713	0	+	0.351648	(0.35,0.378]	chr17	648782	2	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	VMP1	ENSG00000062716.13	ENST00000262291.9:ENST00000592619.5:ENST00000591877.1:ENST00000591782.1:ENST00000588617.1:ENST00000592790.1:ENST00000587470.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	215	2	2.95578	3.45721	3.95864	2.11641e-5	1.0864e-5	0.00355554	0.00260682
chr16	89517790	89517889	6420435	0	+	0.525253	(0.515,0.57]	chr16	616212	11	EXON_LNCRNA	EXON_LNCRNA:INTRON	SPG7	ENSG00000197912.16	ENST00000647079.1:ENST00000646303.1:ENST00000643649.1:ENST00000643307.1:ENST00000566371.6:ENST00000644498.1:ENST00000645897.1:ENST00000643668.1:ENST00000644225.1:ENST00000645818.2:ENST00000645977.1:ENST00000645063.1:ENST00000646263.1:ENST00000643724.1:ENST00000644781.1:ENST00000644901.1:ENST00000645042.1:ENST00000646531.1:ENST00000646930.1:ENST00000642436.1:ENST00000644210.1:ENST00000564047.2:ENST00000646589.1:ENST00000268704.7:ENST00000646826.1:ENST00000646716.1:ENST00000643345.1:ENST00000341316.6:ENST00000645533.1:ENST00000646958.1:ENST00000642371.1:ENST00000643105.1:ENST00000645354.1:ENST00000643957.1:ENST00000642334.1:ENST00000647227.1:ENST00000562775.2:ENST00000568151.1:ENST00000646445.1:ENST00000564409.2:ENST00000643954.1:ENST00000646399.1:ENST00000644671.1:ENST00000643178.1:ENST00000611189.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	77	2	3.02819	3.457175	3.88616	7.81057e-4	1.07993e-4	0.0257168	0.00878438
chr17	62007322	62007420	6810290	0	-	0.22449	[0,0.28]	chr17	672912	38	EXON_MRNA	EXON_MRNA:INTRON	MED13:ENSG00000279133	ENSG00000108510.10:ENSG00000279133.1	ENST00000397786.7:ENST00000624147.1	protein_coding	protein_coding	protein_coding:TEC	protein_coding:TEC	2	94	2	3.33621	3.45715	3.57809	0.00427056	0.00109779	0.0573912	0.0303708
chr1	243300144	243300243	345311	0	+	0.333333	(0.32,0.35]	chr1	40225	63	INTRON	INTRON	SDCCAG8	ENSG00000054282.16	ENST00000366541.8:ENST00000482234.1:ENST00000476722.6:ENST00000435549.1:ENST00000496361.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	33	2	2.64129	3.4571449999999997	4.273	0.0368357	0.0222819	0.138959	0.124303
chr17	31241175	31241275	6592641	0	+	0.35	(0.32,0.35]	chr17	641214	42	INTRON	INTRON	NF1	ENSG00000196712.20	ENST00000696138.1:ENST00000356175.7:ENST00000691014.1:ENST00000358273.9:ENST00000579081.5:ENST00000495910.6:ENST00000456735.6:ENST00000493220.5:ENST00000696139.1:ENST00000466819.5:ENST00000479614.1:ENST00000687863.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	33	2	2.64129	3.4571449999999997	4.273	0.0368357	0.0222819	0.138959	0.124303
chr2	38331695	38331795	1098886	0	-	0.34	(0.32,0.35]	chr2	117856	123	INTRON	INTRON	ATL2	ENSG00000119787.14	ENST00000378954.9:ENST00000406122.5:ENST00000405384.6:ENST00000402054.5:ENST00000419554.6:ENST00000651368.1:ENST00000452935.6:ENST00000449130.5:ENST00000443098.5:ENST00000456736.5:ENST00000474535.2:ENST00000472097.1:ENST00000451483.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	33	2	2.64129	3.4571449999999997	4.273	0.0368357	0.0222819	0.138959	0.124303
chr2	203016155	203016231	986696	0	+	0.328947	(0.32,0.35]	chr2	105858	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	NBEAL1	ENSG00000144426.19	ENST00000682787.1:ENST00000683091.1:ENST00000682077.1:ENST00000682333.1:ENST00000463830.2:ENST00000683969.1:ENST00000449802.5:ENST00000497505.5:ENST00000683927.1:ENST00000478884.5:ENST00000492870.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	33	2	2.64129	3.4571449999999997	4.273	0.0368357	0.0222819	0.138959	0.124303
chr5	6601109	6601204	2566440	0	-	0.336842	(0.32,0.35]	chr5	245877	5	INTRON	INTRON	NSUN2	ENSG00000037474.15	ENST00000264670.11:ENST00000504374.5:ENST00000505892.5:ENST00000513888.5:ENST00000506139.5:ENST00000514127.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	33	2	2.64129	3.4571449999999997	4.273	0.0368357	0.0222819	0.138959	0.124303
chr5	62428132	62428232	2363156	0	+	0.33	(0.32,0.35]	chr5	227852	52	INTRON	INTRON	IPO11	ENSG00000086200.17	ENST00000514647.5:ENST00000424533.5:ENST00000505902.5:ENST00000325324.11:ENST00000506200.5:ENST00000409296.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	33	2	2.64129	3.4571449999999997	4.273	0.0368357	0.0222819	0.138959	0.124303
chr5	69171952	69172051	2380027	0	+	0.333333	(0.32,0.35]	chr5	229163	1	INTRON	INTRON	CCNB1	ENSG00000134057.15	ENST00000506572.5:ENST00000256442.10:ENST00000508407.5:ENST00000505500.5:ENST00000503507.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	33	2	2.64129	3.4571449999999997	4.273	0.0368357	0.0222819	0.138959	0.124303
chr6	20829197	20829297	2831337	0	+	0.35	(0.32,0.35]	chr6	265673	476	INTRON	INTRON	CDKAL1	ENSG00000145996.11	ENST00000274695.8:ENST00000378610.1	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	2.64129	3.4571449999999997	4.273	0.0368357	0.0222819	0.138959	0.124303
chr7	43654746	43654844	3525626	0	-	0.336735	(0.32,0.35]	chr7	328755	37	INTRON	INTRON	COA1	ENSG00000106603.20	ENST00000415076.6:ENST00000446330.6:ENST00000446564.5:ENST00000438444.5:ENST00000223336.11:ENST00000310564.10:ENST00000415798.5:ENST00000431651.5:ENST00000451651.5:ENST00000418140.5:ENST00000448704.5:ENST00000470156.1:ENST00000457939.1:ENST00000420441.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	33	2	2.64129	3.4571449999999997	4.273	0.0368357	0.0222819	0.138959	0.124303
chr16	71801214	71801314	6514401	0	-	0.41	(0.408,0.44]	chr16	631208	114	INTRON	INTRON	AP1G1	ENSG00000166747.13	ENST00000299980.9:ENST00000569748.5:ENST00000393512.7:ENST00000565009.5:ENST00000568327.5:ENST00000450149.6:ENST00000563259.5:ENST00000563104.5:ENST00000569185.5:ENST00000566161.5:ENST00000567583.1:ENST00000565412.5:ENST00000569975.5:ENST00000570297.5:ENST00000570017.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	30	2	2.58179	3.4570849999999997	4.33238	0.024638	0.0218901	0.131869	0.11491
chr2	200984667	200984767	1311008	0	-	0.43	(0.408,0.44]	chr2	137231	24	INTRON	INTRON	FAM126B	ENSG00000155744.10	ENST00000681958.1:ENST00000418596.7:ENST00000286181.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	30	2	2.58179	3.4570849999999997	4.33238	0.024638	0.0218901	0.131869	0.11491
chr20	37216741	37216840	7266516	0	+	0.414141	(0.408,0.44]	chr20	738439	25	INTRON	INTRON	RPN2	ENSG00000118705.17	ENST00000373622.9:ENST00000237530.11	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	2.58179	3.4570849999999997	4.33238	0.024638	0.0218901	0.131869	0.11491
chr9	131459456	131459556	4217634	0	+	0.41	(0.408,0.44]	chr9	386777	1	SS5_PROX	SS5_PROX:INTRON	PRRC2B	ENSG00000288701.1	ENST00000684596.1:ENST00000683519.1:ENST00000682501.1:ENST00000684736.1	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	2.58179	3.4570849999999997	4.33238	0.024638	0.0218901	0.131869	0.11491
chr9	94406072	94406172	4162479	0	+	0.45	(0.44,0.476]	chr9	379485	308	INTRON	INTRON	MFSD14B	ENSG00000148110.17	ENST00000375344.8	protein_coding	protein_coding	protein_coding	protein_coding	3	49	2	2.08211	3.457065	4.83202	0.0130715	0.00525002	0.0996047	0.0633615
chrX	123656256	123656356	7878277	0	-	0.47	(0.44,0.476]	chrX	802527	105	INTRON	INTRON	THOC2	ENSG00000125676.20	ENST00000245838.13:ENST00000355725.8:ENST00000491737.5	protein_coding	protein_coding	protein_coding	protein_coding	3	49	2	2.08211	3.457065	4.83202	0.0130715	0.00525002	0.0996047	0.0633615
chr10	18547711	18547811	4569668	0	-	0.35	(0.32,0.35]	chr10	421477	2	SS5_PROX	SS5_PROX:INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7:ENST00000493816.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	60	2	1.8526	3.456995	5.06139	0.0332438	0.00179023	0.134145	0.0392749
chr7	75478852	75478950	3558858	0	-	0.377551	(0.35,0.378]	chr7	331555	33	INTRON	INTRON	POM121C:ENSG00000242073	ENSG00000272391.6:ENSG00000242073.2	ENST00000615331.5:ENST00000398379.2:ENST00000415277.2	protein_coding	protein_coding	protein_coding:transcribed_unprocessed_pseudogene	protein_coding:transcribed_unprocessed_pseudogene	2	72	2	3.21456	3.45692	3.69928	0.00420814	3.94786e-4	0.0572185	0.0178567
chrX	110023244	110023344	7700239	0	+	0.37	(0.35,0.378]	chrX	788130	187	INTRON	INTRON	TMEM164	ENSG00000157600.12	ENST00000372072.7:ENST00000471255.5:ENST00000372073.5:ENST00000372068.7:ENST00000288381.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	72	2	3.21456	3.45692	3.69928	0.00420814	3.94786e-4	0.0572185	0.0178567
chr9	123214007	123214107	4339934	0	-	0.34	(0.32,0.35]	chr9	398957	2	INTRON	INTRON	STRBP	ENSG00000165209.19	ENST00000348403.10:ENST00000360998.3:ENST00000407982.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	63	2	1.95408	3.4568950000000003	4.95971	0.0124054	0.00663522	0.0973643	0.0703181
chr1	173422300	173422400	586053	0	-	0.41	(0.408,0.44]	chr1	70567	19	INTRON	INTRON	PRDX6-AS1	ENSG00000203739.5	ENST00000669220.1:ENST00000661267.1:ENST00000660739.1:ENST00000367716.3:ENST00000437190.2:ENST00000659863.1	lncRNA	lncRNA	lncRNA	lncRNA	1	30	2	2.3975	3.45677	4.51604	0.040266	0.0137419	0.161534	0.0949306
chr10	7308549	7308649	4551908	0	-	0.44	(0.408,0.44]	chr10	420230	222	INTRON	INTRON	SFMBT2	ENSG00000198879.13	ENST00000397167.6:ENST00000361972.8:ENST00000684547.1:ENST00000683762.1:ENST00000673876.1:ENST00000682896.1:ENST00000379713.8:ENST00000682101.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	30	2	2.3975	3.45677	4.51604	0.040266	0.0137419	0.161534	0.0949306
chr12	71868209	71868307	5169480	0	+	0.428571	(0.408,0.44]	chr12	489708	64	INTRON	INTRON	TBC1D15	ENSG00000121749.16	ENST00000482439.6:ENST00000550746.5:ENST00000485960.7:ENST00000462788.6:ENST00000319106.12:ENST00000491063.5:ENST00000472611.6:ENST00000549402.5:ENST00000474468.5:ENST00000498482.5:ENST00000468049.2:ENST00000546932.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	30	2	2.3975	3.45677	4.51604	0.040266	0.0137419	0.161534	0.0949306
chr14	102682378	102682478	5823431	0	+	0.44	(0.408,0.44]	chr14	552495	4	SS5_PROX	SS5_PROX:INTRON	RCOR1	ENSG00000089902.10	ENST00000262241.7	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	2.3975	3.45677	4.51604	0.040266	0.0137419	0.161534	0.0949306
chr19	45518981	45519078	7080315	0	+	0.412371	(0.408,0.44]	chr19	708221	5	INTRON	INTRON	VASP	ENSG00000125753.14	ENST00000245932.11:ENST00000592139.1:ENST00000590603.1:ENST00000586014.5:ENST00000586619.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	30	2	2.3975	3.45677	4.51604	0.040266	0.0137419	0.161534	0.0949306
chr2	87503624	87503724	826410	0	+	0.41	(0.408,0.44]	chr2	92440	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	CYTOR:ENSG00000284879	ENSG00000222041.12:ENSG00000284879.1	ENST00000642796.1:ENST00000643589.1:ENST00000642451.1:ENST00000646386.1:ENST00000644478.1:ENST00000409139.6:ENST00000331944.10:ENST00000644125.1:ENST00000643743.1:ENST00000644577.1:ENST00000643276.1:ENST00000409898.2:ENST00000419680.6:ENST00000644976.1:ENST00000643070.1:ENST00000646855.1:ENST00000414584.1:ENST00000455131.5:ENST00000646636.1:ENST00000642293.1:ENST00000423846.5:ENST00000644040.1:ENST00000645138.1:ENST00000437561.2:ENST00000629257.1:ENST00000645729.1	lncRNA	lncRNA	lncRNA	lncRNA	1	30	2	2.3975	3.45677	4.51604	0.040266	0.0137419	0.161534	0.0949306
chr2	191942837	191942937	961968	0	+	0.41	(0.408,0.44]	chr2	104337	194	INTRON	INTRON	CAVIN2-AS1	ENSG00000233766.8	ENST00000424116.7:ENST00000428980.6	lncRNA	lncRNA	lncRNA	lncRNA	1	30	2	2.3975	3.45677	4.51604	0.040266	0.0137419	0.161534	0.0949306
chr20	35371692	35371791	7334794	0	-	0.414141	(0.408,0.44]	chr20	747153	47	INTRON	INTRON	UQCC1	ENSG00000101019.22	ENST00000374380.6:ENST00000374394.7:ENST00000374384.6:ENST00000359226.6:ENST00000349714.9:ENST00000457259.5:ENST00000374385.10:ENST00000453855.5:ENST00000397556.7:ENST00000424405.5:ENST00000443429.5:ENST00000438533.5:ENST00000397554.5:ENST00000491125.5:ENST00000491040.5:ENST00000397553.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	30	2	2.3975	3.45677	4.51604	0.040266	0.0137419	0.161534	0.0949306
chr22	42873356	42873455	7596919	0	-	0.414141	(0.408,0.44]	chr22	778117	15	INTRON	INTRON	PACSIN2	ENSG00000100266.19	ENST00000507586.1:ENST00000337959.8:ENST00000263246.8:ENST00000407585.5:ENST00000403744.7:ENST00000402229.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	30	2	2.3975	3.45677	4.51604	0.040266	0.0137419	0.161534	0.0949306
chr5	133063685	133063784	2488118	0	+	0.414141	(0.408,0.44]	chr5	237470	109	INTRON	INTRON	HSPA4	ENSG00000170606.16	ENST00000304858.7	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	2.3975	3.45677	4.51604	0.040266	0.0137419	0.161534	0.0949306
chr7	92449152	92449213	3354394	0	+	0.42623	(0.408,0.44]	chr7	312620	2	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	GATAD1	ENSG00000157259.8	ENST00000287957.5:ENST00000645746.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	30	2	2.3975	3.45677	4.51604	0.040266	0.0137419	0.161534	0.0949306
chr10	74589817	74589916	4460167	0	+	0.343434	(0.32,0.35]	chr10	411599	1	INTRON	INTRON	ADK	ENSG00000156110.15	ENST00000672429.1:ENST00000539909.6:ENST00000286621.7:ENST00000673352.1:ENST00000673310.1:ENST00000672920.1:ENST00000672394.1:ENST00000372734.5:ENST00000673027.1:ENST00000541550.6:ENST00000672604.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	36	2	2.4458	3.45669	4.46758	0.0425977	0.0119306	0.148082	0.0962115
chr2	39075570	39075670	1101883	0	-	0.34	(0.32,0.35]	chr2	118302	70	INTRON	INTRON	SOS1	ENSG00000115904.15	ENST00000692089.1:ENST00000402219.8:ENST00000690876.1:ENST00000395038.6:ENST00000691229.1:ENST00000689668.1:ENST00000690679.1:ENST00000461545.2:ENST00000451331.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	36	2	2.4458	3.45669	4.46758	0.0425977	0.0119306	0.148082	0.0962115
chr1	150344747	150344847	221592	0	+	0.33	(0.32,0.35]	chr1	25021	2	SS5_PROX	SS5_PROX:INTRON	PRPF3	ENSG00000117360.13	ENST00000324862.7:ENST00000467329.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	53	2	1.78201	3.45662	5.13123	0.0365003	0.00394704	0.153759	0.0548259
chr1	149807238	149807336	549361	0	-	0.459184	(0.44,0.476]	chr1	64486	13	INTRON	INTRON	H2BC18	ENSG00000203814.7	ENST00000545683.1:ENST00000420462.1:ENST00000469483.1:ENST00000620458.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	32	2	2.20949	3.4565200000000003	4.70355	0.0672585	0.00383786	0.183051	0.0562562
chr15	99662627	99662727	6115122	0	+	0.46	(0.44,0.476]	chr15	582087	52	INTRON	INTRON	MEF2A	ENSG00000068305.18	ENST00000354410.9:ENST00000558812.5:ENST00000685785.1:ENST00000557785.5:ENST00000558983.5:ENST00000557942.6:ENST00000338042.11:ENST00000449277.6:ENST00000690055.1:ENST00000691492.1:ENST00000686611.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	32	2	2.20949	3.4565200000000003	4.70355	0.0672585	0.00383786	0.183051	0.0562562
chr16	74972416	74972516	6527168	0	-	0.47	(0.44,0.476]	chr16	632160	62	INTRON	INTRON	WDR59	ENSG00000103091.15	ENST00000262144.11:ENST00000616369.4:ENST00000536050.5:ENST00000568323.5:ENST00000563111.2:ENST00000562331.5:ENST00000564859.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	32	2	2.20949	3.4565200000000003	4.70355	0.0672585	0.00383786	0.183051	0.0562562
chr17	32359041	32359141	6598070	0	+	0.45	(0.44,0.476]	chr17	641898	4	SS5_PROX	SS5_PROX:INTRON	ZNF207	ENSG00000010244.19	ENST00000321233.10:ENST00000394673.6:ENST00000394670.9:ENST00000579634.5:ENST00000580759.5:ENST00000342555.10:ENST00000577908.5:ENST00000394679.9:ENST00000582165.1:ENST00000577324.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	32	2	2.20949	3.4565200000000003	4.70355	0.0672585	0.00383786	0.183051	0.0562562
chr7	50772166	50772265	3532468	0	-	0.464646	(0.44,0.476]	chr7	329523	98	INTRON	INTRON	GRB10	ENSG00000106070.20	ENST00000335866.7:ENST00000401949.6:ENST00000644769.1:ENST00000644879.1:ENST00000402497.6:ENST00000407526.6:ENST00000645075.2:ENST00000439044.7:ENST00000644716.1:ENST00000483819.1:ENST00000470992.5:ENST00000492265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	32	2	2.20949	3.4565200000000003	4.70355	0.0672585	0.00383786	0.183051	0.0562562
chr7	77872921	77873021	3344695	0	+	0.46	(0.44,0.476]	chr7	311496	177	INTRON	INTRON	PHTF2	ENSG00000006576.17	ENST00000422959.7:ENST00000416283.6:ENST00000307305.12:ENST00000424760.5:ENST00000415251.6:ENST00000275575.11:ENST00000450574.5:ENST00000248550.7	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	2.20949	3.4565200000000003	4.70355	0.0672585	0.00383786	0.183051	0.0562562
chr7	105547979	105548053	3375849	0	+	0.459459	(0.44,0.476]	chr7	316072	3	INTRON	INTRON	RINT1	ENSG00000135249.8	ENST00000257700.7:ENST00000497979.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	32	2	2.20949	3.4565200000000003	4.70355	0.0672585	0.00383786	0.183051	0.0562562
chr15	87383111	87383211	6253378	0	-	0.46	(0.44,0.476]	chr15	596790	559	INTRON	INTRON	ENSG00000259560	ENSG00000259560.2	ENST00000665121.1:ENST00000656130.1	lncRNA	lncRNA	lncRNA	lncRNA	1	37	2	3.07862	3.4565099999999997	3.8344	0.041276	0.0060153	0.161534	0.0674604
chr1	50535857	50535957	447995	0	-	0.33	(0.32,0.35]	chr1	54182	4	SS3_PROX	SS3_PROX:INTRON	FAF1	ENSG00000185104.21	ENST00000396153.7:ENST00000494400.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	33	2	2.21917	3.4564850000000003	4.6938	0.0641245	0.0137794	0.199279	0.0949306
chr1	179891163	179891262	267132	0	+	0.323232	(0.32,0.35]	chr1	31240	14	INTRON	INTRON	TOR1AIP1	ENSG00000143337.19	ENST00000528443.6:ENST00000606911.7:ENST00000271583.7:ENST00000435319.8:ENST00000531630.6:ENST00000527391.5:ENST00000529091.5:ENST00000527867.5:ENST00000474875.5:ENST00000531726.5:ENST00000524653.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	33	2	2.21917	3.4564850000000003	4.6938	0.0641245	0.0137794	0.199279	0.0949306
chr4	77813375	77813475	2166976	0	-	0.35	(0.32,0.35]	chr4	213719	366	INTRON	INTRON	CNOT6L	ENSG00000138767.14	ENST00000504123.7:ENST00000649644.1:ENST00000515506.6:ENST00000512485.6:ENST00000504804.7:ENST00000506166.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	35	2	2.96746	3.456375	3.94529	0.0693433	0.00815799	0.184298	0.0810802
chrX	2483717	2483816	7745444	0	-	0.323232	(0.32,0.35]	chrX	792966	581	INTRON	INTRON	DHRSX	ENSG00000169084.15	ENST00000334651.11:ENST00000412516.7:ENST00000444280.6:ENST00000441131.7:ENST00000478825.7:ENST00000430536.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	35	2	2.96746	3.456375	3.94529	0.0693433	0.00815799	0.184298	0.0810802
chr7	36426322	36426415	3307386	0	+	0.344086	(0.32,0.35]	chr7	307178	3	SS5_PROX	SS5_PROX:INTRON	ANLN	ENSG00000011426.11	ENST00000396068.6:ENST00000265748.7:ENST00000428612.5:ENST00000457743.1	protein_coding	protein_coding	protein_coding	protein_coding	2	44	2	2.07985	3.45636	4.83287	0.0303092	0.0095071	0.143025	0.0817766
chr12	49758803	49758886	5135115	0	+	0.361446	(0.35,0.378]	chr12	484165	1	EXON_MRNA	EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TMBIM6	ENSG00000139644.13	ENST00000267115.10:ENST00000552699.5:ENST00000549385.5:ENST00000423828.5:ENST00000552370.5:ENST00000395006.8:ENST00000547798.1:ENST00000547013.1:ENST00000550040.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	51	2	1.92704	3.456325	4.98561	0.0228255	0.00474226	0.125469	0.0600445
chr11	61156502	61156602	4955685	0	-	0.47	(0.44,0.476]	chr11	465541	112	INTRON	INTRON	VPS37C	ENSG00000167987.11	ENST00000301765.10:ENST00000538036.1:ENST00000536000.1:ENST00000535818.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	32	2	2.38219	3.456265	4.53034	0.045456	0.00672609	0.149888	0.0738715
chr16	67585174	67585274	6367838	0	+	0.47	(0.44,0.476]	chr16	611823	122	INTRON	INTRON	CTCF	ENSG00000102974.16	ENST00000646076.1:ENST00000644852.1:ENST00000264010.10:ENST00000401394.6:ENST00000646771.1:ENST00000642847.1:ENST00000644753.1:ENST00000642819.1:ENST00000645306.1:ENST00000643892.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	32	2	2.38219	3.456265	4.53034	0.045456	0.00672609	0.149888	0.0738715
chr6	119225071	119225171	3204566	0	-	0.46	(0.44,0.476]	chr6	298302	198	INTRON	INTRON	MAN1A1	ENSG00000111885.7	ENST00000368468.4	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	2.38219	3.456265	4.53034	0.045456	0.00672609	0.149888	0.0738715
chr6	136789111	136789211	3235608	0	-	0.45	(0.44,0.476]	chr6	300700	682	INTRON	INTRON	MAP3K5	ENSG00000197442.10	ENST00000359015.5	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	2.38219	3.456265	4.53034	0.045456	0.00672609	0.149888	0.0738715
chr10	27127286	27127382	4586009	0	-	0.208333	[0,0.28]	chr10	422729	1	INTRON	INTRON	YME1L1	ENSG00000136758.20	ENST00000376016.8:ENST00000613434.4:ENST00000326799.7:ENST00000491542.6:ENST00000463270.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	37	2	2.36637	3.456235	4.5461	0.0500615	0.0365918	0.17488	0.138959
chr10	96565003	96565103	4674209	0	-	0.26	[0,0.28]	chr10	430716	3	SS5_PROX	SS5_PROX:INTRON	TM9SF3	ENSG00000077147.16	ENST00000371142.9:ENST00000649367.1:ENST00000443638.1:ENST00000464654.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	37	2	2.36637	3.456235	4.5461	0.0500615	0.0365918	0.17488	0.138959
chr11	86015561	86015660	5014300	0	-	0.272727	[0,0.28]	chr11	472995	2	INTRON	INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000630913.2:ENST00000528398.5:ENST00000356360.9:ENST00000534412.5:ENST00000531771.5:ENST00000531558.1:ENST00000531930.5:ENST00000532041.5:ENST00000525162.5:ENST00000528256.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	37	2	2.36637	3.456235	4.5461	0.0500615	0.0365918	0.17488	0.138959
chr12	12119849	12119947	5269556	0	-	0.27551	[0,0.28]	chr12	502275	40	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	LRP6	ENSG00000070018.9	ENST00000261349.9:ENST00000538239.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	37	2	2.36637	3.456235	4.5461	0.0500615	0.0365918	0.17488	0.138959
chr15	60467299	60467386	6195892	0	-	0.275862	[0,0.28]	chr15	590451	2	INTRON	INTRON	ICE2	ENSG00000128915.12	ENST00000261520.9:ENST00000558181.5:ENST00000561114.5:ENST00000558512.5:ENST00000560895.5:ENST00000561446.5:ENST00000560668.5:ENST00000561087.5:ENST00000558654.1:ENST00000560072.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	37	2	2.36637	3.456235	4.5461	0.0500615	0.0365918	0.17488	0.138959
chr3	172399172	172399272	1563178	0	+	0.25	[0,0.28]	chr3	161696	18	UTR3	UTR3:EXON_MRNA	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000336824.8	protein_coding	protein_coding	protein_coding	protein_coding	1	37	2	2.36637	3.456235	4.5461	0.0500615	0.0365918	0.17488	0.138959
chr7	107459124	107459224	3611976	0	-	0.24	[0,0.28]	chr7	336694	461	INTRON	INTRON	COG5	ENSG00000164597.15	ENST00000297135.9:ENST00000347053.8:ENST00000393603.7:ENST00000484237.5:ENST00000475638.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	37	2	2.36637	3.456235	4.5461	0.0500615	0.0365918	0.17488	0.138959
chr7	152277746	152277846	3679699	0	-	0.21	[0,0.28]	chr7	341617	35	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000684262.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	37	2	2.36637	3.456235	4.5461	0.0500615	0.0365918	0.17488	0.138959
chr20	31766782	31766882	7253939	0	+	0.4	(0.378,0.408]	chr20	736750	1	SS5_PROX	SS5_PROX:INTRON	TPX2	ENSG00000088325.16	ENST00000340513.4:ENST00000300403.11	protein_coding	protein_coding	protein_coding	protein_coding	3	96	2	2.47752	3.4562150000000003	4.43491	0.0092831	6.16468e-6	0.0817766	0.00174279
chr1	70188308	70188402	479724	0	-	0.265957	[0,0.28]	chr1	57685	6	INTRON	INTRON	LRRC40	ENSG00000066557.6	ENST00000370952.4	protein_coding	protein_coding	protein_coding	protein_coding	1	37	2	2.29142	3.45613	4.62084	0.0592143	0.0313633	0.189982	0.13151
chr1	151454169	151454266	554913	0	-	0.268041	[0,0.28]	chr1	65560	28	INTRON	INTRON	POGZ	ENSG00000143442.22	ENST00000271715.7:ENST00000358476.7:ENST00000368863.6:ENST00000409503.5:ENST00000531094.5:ENST00000491586.5:ENST00000485040.5:ENST00000467287.5:ENST00000533461.5:ENST00000533351.5:ENST00000450842.1:ENST00000476128.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	37	2	2.29142	3.45613	4.62084	0.0592143	0.0313633	0.189982	0.13151
chr1	224947383	224947483	322529	0	+	0.27	[0,0.28]	chr1	37105	172	INTRON	INTRON	DNAH14	ENSG00000185842.16	ENST00000445597.6:ENST00000430092.5:ENST00000366850.7:ENST00000400952.7:ENST00000682510.1:ENST00000366849.5:ENST00000498360.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	37	2	2.29142	3.45613	4.62084	0.0592143	0.0313633	0.189982	0.13151
chr17	28661036	28661128	6745316	0	-	0.228261	[0,0.28]	chr17	662724	7	EXON_LNCRNA	EXON_LNCRNA:INTRON	SDF2	ENSG00000132581.10	ENST00000247020.9:ENST00000592250.5:ENST00000585749.5:ENST00000588472.6:ENST00000591903.1:ENST00000587338.1:ENST00000585428.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	37	2	2.29142	3.45613	4.62084	0.0592143	0.0313633	0.189982	0.13151
chr17	62506580	62506680	6653156	0	+	0.25	[0,0.28]	chr17	649307	201	INTRON	INTRON	TLK2	ENSG00000146872.19	ENST00000582809.5:ENST00000684213.1:ENST00000583843.5:ENST00000579450.5:ENST00000577616.1:ENST00000582195.6:ENST00000682085.1:ENST00000580705.5:ENST00000346027.10:ENST00000326270.13:ENST00000682203.1:ENST00000343388.11:ENST00000683536.1:ENST00000684440.1:ENST00000684772.1:ENST00000682274.1:ENST00000682827.1:ENST00000583690.6:ENST00000682075.1:ENST00000683104.1:ENST00000684012.1:ENST00000581041.5:ENST00000684553.1:ENST00000683737.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	37	2	2.29142	3.45613	4.62084	0.0592143	0.0313633	0.189982	0.13151
chr21	36370575	36370675	7404216	0	+	0.1	[0,0.28]	chr21	754367	3	INTRON	INTRON	MORC3	ENSG00000159256.13	ENST00000400485.6:ENST00000487909.5:ENST00000546482.5:ENST00000549948.5:ENST00000551788.5:ENST00000551367.5:ENST00000552581.5:ENST00000547657.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	37	2	2.29142	3.45613	4.62084	0.0592143	0.0313633	0.189982	0.13151
chr7	107435228	107435328	3611737	0	-	0.26	[0,0.28]	chr7	336694	222	INTRON	INTRON	COG5	ENSG00000164597.15	ENST00000297135.9:ENST00000347053.8:ENST00000393603.7:ENST00000484237.5:ENST00000475638.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	37	2	2.29142	3.45613	4.62084	0.0592143	0.0313633	0.189982	0.13151
chr2	96890339	96890439	1182128	0	-	0.6	(0.57,1]	chr2	126720	115	INTRON	INTRON	FAM178B	ENSG00000168754.15	ENST00000393526.6:ENST00000490605.3:ENST00000470789.5:ENST00000494172.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	27	2	2.13445	3.4558750000000003	4.7773	0.0241482	5.07088e-4	0.12011	0.0202328
chr3	37249972	37250062	1395819	0	+	0.388889	(0.378,0.408]	chr3	146310	4	EXON_LNCRNA	EXON_LNCRNA:INTRON	GOLGA4	ENSG00000144674.17	ENST00000435830.6:ENST00000444882.5:ENST00000356847.8:ENST00000450863.6:ENST00000361924.7:ENST00000429018.5:ENST00000431105.1:ENST00000419177.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	79	2	1.27711	3.45587	5.63463	0.0441401	3.59226e-4	0.162255	0.0175484
chr12	111450157	111450255	5228043	0	+	0.602041	(0.57,1]	chr12	495525	20	UTR3	UTR3:EXON_MRNA	SH2B3	ENSG00000111252.11	ENST00000341259.7	protein_coding	protein_coding	protein_coding	protein_coding	2	27	2	2.23711	3.4557700000000002	4.67443	0.0172108	8.07515e-4	0.104099	0.0258804
chr12	57384155	57384254	5338789	0	-	0.515152	(0.476,0.515]	chr12	510710	428	INTRON	INTRON	R3HDM2	ENSG00000179912.21	ENST00000402412.6:ENST00000347140.7:ENST00000634871.1:ENST00000448732.1	protein_coding	protein_coding	protein_coding	protein_coding	3	88	2	3.07601	3.45556	3.83511	5.95211e-4	2.63754e-4	0.0221865	0.0149561
chr2	111431707	111431807	1211167	0	-	0.54	(0.515,0.57]	chr2	128899	9	INTRON	INTRON	MIR4435-2HG	ENSG00000172965.17	ENST00000645030.2:ENST00000642191.1:ENST00000673798.1:ENST00000645051.2:ENST00000673649.1:ENST00000669658.1:ENST00000669917.1:ENST00000661559.1:ENST00000653687.1:ENST00000667670.1:ENST00000609220.2:ENST00000656760.1:ENST00000609902.6:ENST00000666683.1:ENST00000674070.1:ENST00000662335.1:ENST00000664422.1:ENST00000673775.1:ENST00000674092.1:ENST00000673958.1:ENST00000658936.1:ENST00000662635.1:ENST00000666204.1:ENST00000659458.1:ENST00000664443.1:ENST00000670295.1:ENST00000661655.1:ENST00000666390.1:ENST00000659079.1:ENST00000660442.1:ENST00000664009.1:ENST00000439362.6:ENST00000654473.1:ENST00000664999.1:ENST00000673728.1:ENST00000659791.1:ENST00000666144.1:ENST00000659933.1:ENST00000670715.1:ENST00000653568.1:ENST00000643013.1:ENST00000673866.1:ENST00000443467.6:ENST00000669875.1:ENST00000673653.1:ENST00000673988.1:ENST00000661945.1:ENST00000669515.1:ENST00000431385.6:ENST00000656416.1:ENST00000674037.1:ENST00000432818.5:ENST00000674013.1:ENST00000444301.5:ENST00000673964.1:ENST00000673845.1:ENST00000673756.1:ENST00000673960.1:ENST00000673804.1:ENST00000673632.1:ENST00000453478.2:ENST00000673937.1:ENST00000673654.1:ENST00000409569.2:ENST00000674087.1:ENST00000419736.5:ENST00000673840.1:ENST00000674045.1:ENST00000673821.1:ENST00000643766.1:ENST00000308604.5:ENST00000674026.1:ENST00000604981.5:ENST00000603310.5:ENST00000673894.1:ENST00000442293.5:ENST00000441075.1	lncRNA	lncRNA	lncRNA	lncRNA	3	78	2	3.19161	3.455515	3.71942	3.49295e-4	2.61221e-4	0.017404	0.014326
chr4	183712001	183712099	2086722	0	+	0.387755	(0.378,0.408]	chr4	206294	31	INTRON	INTRON	TRAPPC11	ENSG00000168538.16	ENST00000357207.8:ENST00000334690.11:ENST00000505676.5:ENST00000512476.1:ENST00000511955.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	42	2	2.41037	3.4554650000000002	4.50056	0.015974	0.0100185	0.101453	0.0880217
chr5	132604385	132604465	2487185	0	+	0.45	(0.44,0.476]	chr5	237375	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RAD50	ENSG00000113522.14	ENST00000533482.5:ENST00000378823.8:ENST00000652016.1:ENST00000651160.1:ENST00000652485.1:ENST00000651723.1:ENST00000423956.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	45	2	2.29126	3.4554	4.61954	0.0165638	0.00506805	0.102621	0.0646039
chr2	148649347	148649447	891798	0	+	0.31	(0.28,0.32]	chr2	98781	34	INTRON	INTRON	EPC2	ENSG00000135999.12	ENST00000457184.5:ENST00000258484.11:ENST00000409654.5:ENST00000397424.2	protein_coding	protein_coding	protein_coding	protein_coding	1	39	2	2.57195	3.45529	4.33863	0.0331711	0.0207276	0.133994	0.122348
chr16	85660548	85660645	6416453	0	+	0.525773	(0.515,0.57]	chr16	615523	10	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000405402.6:ENST00000253458.12:ENST00000393243.5:ENST00000412692.5	protein_coding	protein_coding	protein_coding	protein_coding	4	103	2	3.0958	3.455215	3.81463	5.63557e-4	6.3757e-6	0.0219303	0.0017789
chr15	55253129	55253228	6180535	0	-	0.454545	(0.44,0.476]	chr15	589154	42	INTRON	INTRON	RAB27A	ENSG00000069974.16	ENST00000336787.6:ENST00000396307.6:ENST00000564609.5:ENST00000569493.5:ENST00000567380.5:ENST00000565972.5:ENST00000563262.5:ENST00000568803.1:ENST00000567639.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	68	2	2.97451	3.45518	3.93585	0.00853825	1.04728e-4	0.0780043	0.00863456
chr1	45928820	45928920	95069	0	+	0.37	(0.35,0.378]	chr1	12715	109	INTRON	INTRON	MAST2	ENSG00000086015.23	ENST00000361297.7:ENST00000372008.6:ENST00000674079.1	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	2.1617	3.4551499999999997	4.7486	0.0771502	0.00418965	0.196285	0.0591344
chr13	113518916	113519016	5549450	0	+	0.36	(0.35,0.378]	chr13	530305	81	INTRON	INTRON	TMCO3	ENSG00000150403.18	ENST00000434316.7:ENST00000375391.5:ENST00000474393.5:ENST00000462877.5	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	2.1617	3.4551499999999997	4.7486	0.0771502	0.00418965	0.196285	0.0591344
chr1	162591761	162591855	238627	0	+	0.521277	(0.515,0.57]	chr1	28740	9	INTRON	INTRON	UAP1	ENSG00000117143.14	ENST00000367925.6:ENST00000367926.9	protein_coding	protein_coding	protein_coding	protein_coding	5	106	2	2.45261	3.45491	4.45721	0.00116897	5.69244e-6	0.0315666	0.00177762
chr1	39742721	39742820	79384	0	+	0.363636	(0.35,0.378]	chr1	10271	8	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	PPIE	ENSG00000084072.17	ENST00000470018.5:ENST00000324379.10:ENST00000356511.6:ENST00000495526.5:ENST00000482751.5:ENST00000372830.5:ENST00000372835.9:ENST00000470213.5:ENST00000497370.5:ENST00000474804.5:ENST00000475350.5:ENST00000480169.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	34	2	2.32443	3.4549000000000003	4.58537	0.0544216	0.00703328	0.164972	0.0754576
chr19	32627127	32627227	7169123	0	-	0.36	(0.35,0.378]	chr19	724401	3	SS3_PROX	SS3_PROX:INTRON	ANKRD27	ENSG00000105186.16	ENST00000306065.9:ENST00000591100.6	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	2.32443	3.4549000000000003	4.58537	0.0544216	0.00703328	0.164972	0.0754576
chr7	140459424	140459515	3661423	0	-	0.263736	[0,0.28]	chr7	339907	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MKRN1	ENSG00000133606.11	ENST00000255977.7:ENST00000475010.5:ENST00000495305.5:ENST00000474576.5:ENST00000480552.5:ENST00000496169.5:ENST00000443720.6:ENST00000471104.5:ENST00000467513.5:ENST00000494939.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	52	2	2.28885	3.454845	4.62084	0.0313633	0.0181093	0.13151	0.114853
chr1	28508160	28508215	57191	0	+	0.327273	(0.32,0.35]	chr1	7382	1	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	RCC1:SNHG3	ENSG00000180198.17:ENSG00000242125.3	ENST00000398958.6:ENST00000649185.1:ENST00000413987.1:ENST00000427469.5:ENST00000683442.1:ENST00000447507.1:ENST00000434290.6:ENST00000373833.10:ENST00000437681.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	31	950	2	3.45395	3.454825	3.4557	4.34035e-7	1.53655e-8	3.76165e-4	4.33644e-5
chr1	12300767	12300865	28958	0	+	0.459184	(0.44,0.476]	chr1	3512	10	INTRON	INTRON	VPS13D	ENSG00000048707.15	ENST00000620676.6:ENST00000613099.4:ENST00000011700.10:ENST00000646917.1:ENST00000460333.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	40	2	2.0776	3.45481	4.83202	0.0292951	0.00525002	0.141862	0.0633615
chr16	18085694	18085793	6453490	0	-	0.444444	(0.44,0.476]	chr16	621960	819	INTRON	INTRON	ENSG00000259929:ENSG00000260242	ENSG00000259929.5:ENSG00000260242.1	ENST00000567304.1:ENST00000563866.1	lncRNA	lncRNA	lncRNA	lncRNA	2	40	2	2.0776	3.45481	4.83202	0.0292951	0.00525002	0.141862	0.0633615
chr2	96621753	96621852	1181025	0	-	0.40404	(0.378,0.408]	chr2	126496	16	INTRON	INTRON	KANSL3	ENSG00000114982.19	ENST00000354204.10:ENST00000431828.6:ENST00000487070.5:ENST00000447759.5:ENST00000420155.5:ENST00000670907.1:ENST00000666923.1:ENST00000597150.5:ENST00000444759.5:ENST00000452268.5:ENST00000425656.5:ENST00000448075.1:ENST00000451819.5:ENST00000416138.1:ENST00000418735.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	70	2	3.00568	3.454695	3.90371	0.00811866	1.30398e-4	0.0766625	0.00983066
chr8	92869422	92869522	3990800	0	-	0.3	(0.28,0.32]	chr8	365358	830	INTRON	INTRON	FLJ46284	ENSG00000248858.7	ENST00000504861.2	lncRNA	lncRNA	lncRNA	lncRNA	2	83	2	3.16101	3.454535	3.74806	0.0061861	4.11943e-4	0.0677395	0.0181365
chr7	91981957	91982057	3351432	0	+	0.44	(0.408,0.44]	chr7	312210	6	INTRON	INTRON	AKAP9	ENSG00000127914.19	ENST00000680534.1:ENST00000680513.1:ENST00000680072.1:ENST00000679821.1:ENST00000679554.1:ENST00000356239.8:ENST00000679521.1:ENST00000680181.1:ENST00000681722.1:ENST00000680766.1:ENST00000679448.1:ENST00000681412.1:ENST00000680047.1:ENST00000679474.1:ENST00000680952.1:ENST00000679457.1:ENST00000679722.1:ENST00000680074.1:ENST00000493453.1:ENST00000394564.5:ENST00000674381.2:ENST00000359028.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	49	2	2.08376	3.45453	4.8253	0.0129886	0.0056738	0.0991656	0.0653997
chr16	50302761	50302861	6348969	0	+	0.61	(0.57,1]	chr16	609453	9	INTRON	INTRON	ADCY7	ENSG00000121281.13	ENST00000394697.7:ENST00000673801.1:ENST00000566433.6:ENST00000673973.1:ENST00000537579.5:ENST00000254235.7:ENST00000567277.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	91	2	3.45394	3.454525	3.45511	4.32887e-5	1.0705e-6	0.00532052	6.3737e-4
chr11	61427714	61427812	4957039	0	-	0.377551	(0.35,0.378]	chr11	465889	5	INTRON	INTRON	CPSF7	ENSG00000149532.16	ENST00000340437.8:ENST00000394888.8:ENST00000439958.8:ENST00000448745.5:ENST00000537641.5:ENST00000477890.6:ENST00000544669.5:ENST00000539952.5:ENST00000535222.5:ENST00000544990.5:ENST00000544585.5:ENST00000413232.5:ENST00000537162.5:ENST00000543545.5:ENST00000541963.5:ENST00000536548.5:ENST00000450000.5:ENST00000449811.5:ENST00000413184.6:ENST00000536145.3:ENST00000545934.5:ENST00000463244.6:ENST00000626926.1:ENST00000489728.1:ENST00000474684.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	37	2	2.83709	3.454475	4.07186	0.0279478	0.01435	0.137011	0.0966737
chr12	123222295	123222395	5443953	0	-	0.33	(0.32,0.35]	chr12	520855	4	SS3_PROX	SS3_PROX:INTRON	MPHOSPH9	ENSG00000051825.15	ENST00000606320.6:ENST00000541076.6:ENST00000545556.6:ENST00000539336.2:ENST00000537854.5:ENST00000539639.5:ENST00000541437.5:ENST00000538169.5:ENST00000535049.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	34	2	2.84569	3.45434	4.06299	0.0559439	0.0121137	0.165463	0.0962599
chr3	37128080	37128180	1656149	0	-	0.33	(0.32,0.35]	chr3	170000	4	SS3_PROX	SS3_PROX:INTRON	LRRFIP2	ENSG00000093167.18	ENST00000336686.9:ENST00000354379.8:ENST00000421276.6:ENST00000396428.6:ENST00000440230.5:ENST00000416425.5:ENST00000461672.5:ENST00000438374.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	34	2	2.84569	3.45434	4.06299	0.0559439	0.0121137	0.165463	0.0962599
chr1	25904079	25904163	404603	0	-	0.440476	(0.44,0.476]	chr1	48555	3	SS3_PROX	SS3_PROX:INTRON	STMN1	ENSG00000117632.23	ENST00000426559.6:ENST00000455785.7:ENST00000399728.5:ENST00000465604.1:ENST00000357865.6:ENST00000374291.5:ENST00000446334.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	122	2	2.53021	3.4543299999999997	4.37845	8.87528e-4	1.64817e-5	0.0271952	0.00325235
chr21	8402863	8402963	7366578	0	+	0.46	(0.44,0.476]	chr21	751814	184	INTRON	INTRON	ENSG00000280441	ENSG00000280441.3	ENST00000623860.3:ENST00000651813.1:ENST00000652379.1:ENST00000651958.1	lncRNA	lncRNA	lncRNA	lncRNA	2	67	2	3.36231	3.4543150000000002	3.54632	0.00161678	9.9951e-4	0.0369204	0.0288906
chr3	119443747	119443846	1791781	0	-	0.484848	(0.476,0.515]	chr3	179928	53	INTRON	INTRON	TMEM39A	ENSG00000176142.13	ENST00000319172.10:ENST00000438581.6:ENST00000491685.5:ENST00000486159.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	49	2	2.06898	3.4543	4.83962	0.0137491	0.00480934	0.10247	0.0602209
chr10	42351140	42351239	4603285	0	-	0.333333	(0.32,0.35]	chr10	424077	102	INTRON	INTRON	ENSG00000215146	ENSG00000215146.5	ENST00000609841.1:ENST00000650175.1:ENST00000423987.2:ENST00000609034.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	2	49	2	2.04237	3.454295	4.86622	0.0375542	0.00354075	0.140222	0.0546236
chr3	194409107	194409206	1890386	0	-	0.353535	(0.35,0.378]	chr3	189095	26	INTRON	INTRON	ATP13A3	ENSG00000133657.17	ENST00000687055.1:ENST00000645538.1:ENST00000645319.2:ENST00000690810.1:ENST00000429136.7:ENST00000645621.1:ENST00000691700.1:ENST00000461660.2:ENST00000685123.1:ENST00000642744.2:ENST00000439040.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	43	2	2.34278	3.4541399999999998	4.5655	0.0155464	0.0129593	0.100909	0.0991015
chr10	7793036	7793135	4387561	0	+	0.343434	(0.32,0.35]	chr10	405026	44	INTRON	INTRON	ATP5F1C	ENSG00000165629.20	ENST00000493053.5:ENST00000462760.1:ENST00000460362.5:ENST00000335698.4:ENST00000356708.12:ENST00000465936.5:ENST00000460820.6:ENST00000472202.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	61	2	1.72405	3.4541	5.18415	0.0275418	0.00333629	0.137011	0.0512081
chr6	157026239	157026338	3009656	0	+	0.363636	(0.35,0.378]	chr6	281133	16	INTRON	INTRON	ARID1B	ENSG00000049618.24	ENST00000346085.10:ENST00000636930.2:ENST00000647938.1:ENST00000350026.10:ENST00000674298.1:ENST00000674190.1:ENST00000414678.7:ENST00000319584.11:ENST00000452544.2:ENST00000637887.1:ENST00000635849.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	46	2	1.81767	3.4540949999999997	5.09052	0.0640429	0.00123501	0.177882	0.0326215
chr1	108777707	108777805	178563	0	+	0.387755	(0.378,0.408]	chr1	19419	9	INTRON	INTRON	STXBP3	ENSG00000116266.11	ENST00000370008.4:ENST00000485167.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	33	2	2.13703	3.45404	4.77105	0.0797592	0.00330823	0.19979	0.0527031
chr12	45761497	45761597	5123034	0	+	0.38	(0.378,0.408]	chr12	483303	56	INTRON	INTRON	ARID2	ENSG00000189079.17	ENST00000334344.11:ENST00000426776.5:ENST00000422737.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	33	2	2.13703	3.45404	4.77105	0.0797592	0.00330823	0.19979	0.0527031
chr16	70128185	70128283	6383573	0	+	0.387755	(0.378,0.408]	chr16	613466	4	INTRON	INTRON	PDPR	ENSG00000090857.14	ENST00000288050.9:ENST00000561920.5:ENST00000568530.5:ENST00000398122.7:ENST00000565186.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	33	2	2.13703	3.45404	4.77105	0.0797592	0.00330823	0.19979	0.0527031
chr6	97274758	97274858	3164691	0	-	0.38	(0.378,0.408]	chr6	295147	13	INTRON	INTRON	MMS22L	ENSG00000146263.12	ENST00000683635.1:ENST00000275053.8:ENST00000369251.6:ENST00000509383.5:ENST00000510018.5:ENST00000508976.5:ENST00000508820.1:ENST00000496119.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	33	2	2.13703	3.45404	4.77105	0.0797592	0.00330823	0.19979	0.0527031
chr1	28281298	28281398	55743	0	+	0.49	(0.476,0.515]	chr1	7240	6	UTR3	UTR3:EXON_MRNA	SESN2	ENSG00000130766.5	ENST00000253063.4	protein_coding	protein_coding	protein_coding	protein_coding	2	41	2	2.37731	3.4537700000000005	4.53023	0.0119748	0.0111793	0.0937192	0.0899583
chr20	49130863	49130963	7351797	0	-	0.51	(0.476,0.515]	chr20	749646	59	INTRON	INTRON	STAU1	ENSG00000124214.21	ENST00000371856.7:ENST00000371828.7:ENST00000340954.11:ENST00000347458.9:ENST00000360426.8:ENST00000371792.5:ENST00000371802.5:ENST00000437404.2	protein_coding	protein_coding	protein_coding	protein_coding	2	41	2	2.37731	3.4537700000000005	4.53023	0.0119748	0.0111793	0.0937192	0.0899583
chr15	67181753	67181853	6053024	0	+	0.38	(0.378,0.408]	chr15	576323	3	SS5_PROX	SS5_PROX:INTRON	SMAD3	ENSG00000166949.17	ENST00000327367.9:ENST00000679624.1:ENST00000540846.6:ENST00000558894.5:ENST00000439724.7:ENST00000681239.1:ENST00000537194.6:ENST00000558827.1:ENST00000560402.1:ENST00000680689.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	33	2	2.38873	3.453635	4.51854	0.0458857	0.00748824	0.149888	0.0772645
chr2	112559974	112560074	851790	0	+	0.42	(0.408,0.44]	chr2	95497	4	SS5_PROX	SS5_PROX:INTRON	POLR1B	ENSG00000125630.16	ENST00000537335.5:ENST00000541869.5:ENST00000333990.10:ENST00000409894.7:ENST00000448770.5:ENST00000263331.10:ENST00000417433.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	49	2	2.57295	3.453475	4.334	0.011982	0.00640423	0.0962115	0.0694534
chr5	19025101	19025201	2569313	0	-	0.53	(0.515,0.57]	chr5	246196	585	INTRON	INTRON	ENSG00000249174	ENSG00000249174.1	ENST00000504827.1	lncRNA	lncRNA	lncRNA	lncRNA	4	50	2	1.68552	3.4534649999999996	5.22141	0.0292028	6.44141e-4	0.141637	0.0231685
chr19	10118567	10118657	7134178	0	-	0.422222	(0.408,0.44]	chr19	719043	1	SSB_ADJ	SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	EIF3G	ENSG00000130811.12	ENST00000253108.9:ENST00000589454.5:ENST00000587146.5:ENST00000588709.5:ENST00000589009.5:ENST00000593066.5:ENST00000593095.5:ENST00000587993.5:ENST00000590940.5:ENST00000587681.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	71	2	3.08738	3.4533300000000002	3.81928	0.00478231	3.06208e-4	0.0636201	0.0161362
chr1	246304318	246304418	678678	0	-	0.26	[0,0.28]	chr1	79733	1107	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000453676.5:ENST00000462422.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	41	2	2.27119	3.45321	4.63523	0.070351	0.0139836	0.184298	0.10247
chr15	34145764	34145855	6130738	0	-	0.175824	[0,0.28]	chr15	583889	4	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	KATNBL1	ENSG00000134152.11	ENST00000256544.8:ENST00000561270.5:ENST00000558681.1:ENST00000561371.5:ENST00000559760.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	41	2	2.27119	3.45321	4.63523	0.070351	0.0139836	0.184298	0.10247
chr7	133017712	133017812	3645243	0	-	0.26	[0,0.28]	chr7	338859	421	INTRON	INTRON	CHCHD3	ENSG00000106554.13	ENST00000262570.10:ENST00000448878.6:ENST00000496427.5:ENST00000423635.5:ENST00000481152.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	41	2	2.27119	3.45321	4.63523	0.070351	0.0139836	0.184298	0.10247
chr9	124750735	124750835	4349010	0	-	0.27	[0,0.28]	chr9	399261	170	INTRON	INTRON	NR6A1	ENSG00000148200.17	ENST00000487099.7:ENST00000373584.7:ENST00000416460.6:ENST00000344523.8	protein_coding	protein_coding	protein_coding	protein_coding	1	41	2	2.27119	3.45321	4.63523	0.070351	0.0139836	0.184298	0.10247
chr1	25483315	25483415	48477	0	+	0.47	(0.44,0.476]	chr1	5949	241	INTRON	INTRON	MACO1	ENSG00000204178.11	ENST00000399766.7:ENST00000374343.5:ENST00000647928.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	40	2	2.14573	3.4532049999999996	4.76068	0.0238593	0.00653414	0.129075	0.0699952
chr10	28537663	28537739	4413847	0	+	0.447368	(0.44,0.476]	chr10	407141	1	UTR3	UTR3:EXON_MRNA:INTRON	WAC	ENSG00000095787.24	ENST00000680735.1:ENST00000375664.8:ENST00000428935.6:ENST00000651598.1:ENST00000628285.3:ENST00000681112.1:ENST00000679570.1:ENST00000375646.5:ENST00000354911.9:ENST00000347934.8:ENST00000420266.6:ENST00000651885.1:ENST00000651441.1:ENST00000679398.1:ENST00000424454.5:ENST00000442148.6:ENST00000448193.5:ENST00000414108.6:ENST00000679428.1:ENST00000439676.5:ENST00000345541.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	40	2	2.14573	3.4532049999999996	4.76068	0.0238593	0.00653414	0.129075	0.0699952
chr16	2689678	2689777	6279611	0	+	0.464646	(0.44,0.476]	chr16	600714	30	INTRON	INTRON	KCTD5	ENSG00000167977.9	ENST00000301738.9:ENST00000570005.5:ENST00000564246.1:ENST00000564195.1:ENST00000569689.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	40	2	2.14573	3.4532049999999996	4.76068	0.0238593	0.00653414	0.129075	0.0699952
chr17	17683991	17684087	6565519	0	+	0.46875	(0.44,0.476]	chr17	638201	4	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	RAI1	ENSG00000108557.20	ENST00000353383.6:ENST00000489697.1:ENST00000471135.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	40	2	2.14573	3.4532049999999996	4.76068	0.0238593	0.00653414	0.129075	0.0699952
chr2	87481406	87481506	826186	0	+	0.45	(0.44,0.476]	chr2	92432	4	INTRON	INTRON	CYTOR:ENSG00000284879	ENSG00000222041.12:ENSG00000284879.1	ENST00000642796.1:ENST00000643589.1:ENST00000642451.1:ENST00000646386.1:ENST00000644478.1:ENST00000409139.6:ENST00000331944.10:ENST00000644125.1:ENST00000643743.1:ENST00000644577.1:ENST00000643276.1:ENST00000409898.2:ENST00000419680.6:ENST00000644976.1:ENST00000643070.1:ENST00000646855.1:ENST00000414584.1:ENST00000455131.5:ENST00000646636.1:ENST00000642293.1:ENST00000423846.5:ENST00000644040.1:ENST00000645138.1:ENST00000437561.2:ENST00000629257.1	lncRNA	lncRNA	lncRNA	lncRNA	2	40	2	2.14573	3.4532049999999996	4.76068	0.0238593	0.00653414	0.129075	0.0699952
chrX	16744934	16745033	7626068	0	+	0.474747	(0.44,0.476]	chrX	780899	7	INTRON	INTRON	SYAP1	ENSG00000169895.6	ENST00000380155.4	protein_coding	protein_coding	protein_coding	protein_coding	2	40	2	2.14573	3.4532049999999996	4.76068	0.0238593	0.00653414	0.129075	0.0699952
chr2	208306746	208306846	992418	0	+	0.46	(0.44,0.476]	chr2	106658	13	INTRON	INTRON	PIKFYVE	ENSG00000115020.17	ENST00000264380.9:ENST00000443896.5:ENST00000452564.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	119	2	3.11801	3.4530849999999997	3.78816	6.56773e-4	1.04847e-5	0.0233791	0.00235959
chr8	23211815	23211915	3924206	0	-	0.34	(0.32,0.35]	chr8	359166	3	SS5_PROX	SS5_PROX:INTRON	TNFRSF10A	ENSG00000104689.10	ENST00000221132.8:ENST00000613472.1:ENST00000524158.5	protein_coding	protein_coding	protein_coding	protein_coding	1	41	2	2.99125	3.453055	3.91486	0.0450361	0.00958447	0.163255	0.0820838
chr2	159713459	159713558	899493	0	+	0.353535	(0.35,0.378]	chr2	99508	4	INTRON	INTRON	MARCHF7	ENSG00000136536.15	ENST00000539065.5:ENST00000259050.8:ENST00000409175.6:ENST00000421037.1:ENST00000473749.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	52	2	2.11531	3.45305	4.79079	0.0119629	0.00846427	0.0962115	0.0776969
chr11	66273936	66274033	4809846	0	+	0.443299	(0.44,0.476]	chr11	447560	11	INTRON	INTRON	RAB1B	ENSG00000174903.16	ENST00000527397.1:ENST00000311481.11	protein_coding	protein_coding	protein_coding	protein_coding	2	40	2	2.00609	3.4530450000000004	4.9	0.0360127	0.00423315	0.152355	0.0572185
chr5	119342307	119342407	2462335	0	+	0.33	(0.32,0.35]	chr5	235853	83	INTRON	INTRON	TNFAIP8	ENSG00000145779.8	ENST00000274456.6:ENST00000388882.5:ENST00000513374.1	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	2.74415	3.453005	4.16186	0.026079	0.0198267	0.133676	0.109608
chr3	138944223	138944320	1831503	0	-	0.309278	(0.28,0.32]	chr3	184066	1	UTR3	UTR3:EXON_MRNA	FOXL2	ENSG00000183770.7	ENST00000648323.1	protein_coding	protein_coding	protein_coding	protein_coding	2	54	2	2.22069	3.45298	4.68527	0.0243177	0.00819419	0.12011	0.0810802
chr1	17410451	17410551	384684	0	-	0.42	(0.408,0.44]	chr1	45442	4	SS3_PROX	SS3_PROX:INTRON	RCC2	ENSG00000179051.14	ENST00000375436.9:ENST00000375433.3	protein_coding	protein_coding	protein_coding	protein_coding	4	119	2	3.25007	3.452955	3.65584	3.61891e-4	2.38988e-5	0.0176126	0.00383194
chr12	122217513	122217605	5439626	0	-	0.358696	(0.35,0.378]	chr12	520173	8	EXON_MRNA	EXON_MRNA:INTRON	DIABLO	ENSG00000184047.20	ENST00000443649.9:ENST00000650715.1:ENST00000464942.7:ENST00000353548.11:ENST00000644227.1:ENST00000644509.1:ENST00000342392.3:ENST00000645569.1:ENST00000267169.11:ENST00000489781.3:ENST00000540535.6:ENST00000642640.1:ENST00000439489.6:ENST00000541273.6:ENST00000474004.6:ENST00000541656.6:ENST00000446652.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	48	2	2.23651	3.4529	4.66929	0.020879	0.00541617	0.111766	0.066545000000000007
chr6	13646020	13646119	3058563	0	-	0.353535	(0.35,0.378]	chr6	284524	9	INTRON	INTRON	RANBP9	ENSG00000010017.13	ENST00000011619.6	protein_coding	protein_coding	protein_coding	protein_coding	5	66	2	1.74831	3.45277	5.15723	0.0169142	0.00272706	0.110899	0.0467523
chr1	247168152	247168252	683836	0	-	0.37	(0.35,0.378]	chr1	80174	79	INTRON	INTRON	ZNF124	ENSG00000196418.13	ENST00000472531.5:ENST00000491356.5:ENST00000543802.3:ENST00000340684.10:ENST00000491848.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	46	2	1.87717	3.452745	5.02832	0.0555068	0.00156444	0.165463	0.0365263
chr4	2581204	2581304	1912962	0	+	0.36	(0.35,0.378]	chr4	191976	437	INTRON	INTRON	RNF4:FAM193A	ENSG00000063978.16:ENSG00000125386.16	ENST00000508235.1:ENST00000637812.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	46	2	1.87717	3.452745	5.02832	0.0555068	0.00156444	0.165463	0.0365263
chr4	126630586	126630686	2237015	0	-	0.4	(0.378,0.408]	chr4	219023	1651	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	5	64	2	1.78414	3.4527099999999997	5.12128	0.0144669	0.00251746	0.105142	0.0446195
chr1	51399465	51399565	453135	0	-	0.51	(0.476,0.515]	chr1	54328	3	SS3_PROX	SS3_PROX:INTRON	EPS15	ENSG00000085832.17	ENST00000371733.8:ENST00000371730.6:ENST00000486505.5:ENST00000478657.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	43	2	2.05154	3.452665	4.85379	0.0336015	0.00234214	0.134145	0.0442989
chr19	55667907	55668006	7101663	0	+	0.494949	(0.476,0.515]	chr19	712540	38	INTRON	INTRON	U2AF2	ENSG00000063244.13	ENST00000450554.6:ENST00000308924.9:ENST00000592874.1:ENST00000590551.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	43	2	2.05154	3.452665	4.85379	0.0336015	0.00234214	0.134145	0.0442989
chr9	136891241	136891340	4222234	0	+	0.515152	(0.476,0.515]	chr9	387796	3	INTRON	INTRON	TRAF2	ENSG00000127191.18	ENST00000419057.5:ENST00000429509.5:ENST00000247668.7:ENST00000414589.1	protein_coding	protein_coding	protein_coding	protein_coding	2	43	2	2.05154	3.452665	4.85379	0.0336015	0.00234214	0.134145	0.0442989
chr9	112050455	112050555	4315515	0	-	0.4	(0.378,0.408]	chr9	396891	79	INTRON	INTRON	SUSD1	ENSG00000106868.17	ENST00000374270.8:ENST00000374263.7:ENST00000355396.7:ENST00000374264.6:ENST00000475283.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	45	2	2.05897	3.4526199999999996	4.84627	0.0339294	0.00254319	0.134508	0.0465056
chr2	28854384	28854483	1088518	0	-	0.484848	(0.476,0.515]	chr2	116797	15	INTRON	INTRON	TRMT61B	ENSG00000171103.11	ENST00000306108.10:ENST00000439947.1:ENST00000490390.5:ENST00000484060.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	66	2	3.44784	3.4524749999999997	3.45711	0.00140905	0.00113238	0.0340865	0.0308465
chr1	42212240	42212339	431200	0	-	0.222222	[0,0.28]	chr1	52305	60	INTRON	INTRON	FOXJ3	ENSG00000198815.9	ENST00000372573.5:ENST00000372572.5:ENST00000361776.5:ENST00000545068.5:ENST00000361346.6:ENST00000445886.5	protein_coding	protein_coding	protein_coding	protein_coding	1	37	2	2.43761	3.4524349999999995	4.46726	0.0427997	0.0423864	0.161744	0.148082
chr2	188253031	188253131	1295051	0	-	0.26	[0,0.28]	chr2	135671	241	INTRON	INTRON	LINC01090	ENSG00000231689.3	ENST00000434418.2:ENST00000632331.1:ENST00000415357.1	lncRNA	lncRNA	lncRNA	lncRNA	1	37	2	2.43761	3.4524349999999995	4.46726	0.0427997	0.0423864	0.161744	0.148082
chr7	42917483	42917573	3523374	0	-	0.277778	[0,0.28]	chr7	328565	8	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	ENSG00000256646:PSMA2	ENSG00000256646.8:ENSG00000106588.12	ENST00000442788.5:ENST00000677234.1:ENST00000677660.1:ENST00000676779.1:ENST00000431882.4:ENST00000677768.1:ENST00000433579.1:ENST00000679247.1:ENST00000677581.1:ENST00000223321.9:ENST00000457444.6:ENST00000436986.5:ENST00000678407.1:ENST00000677578.1:ENST00000677139.1:ENST00000678034.1:ENST00000445517.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	37	2	2.43761	3.4524349999999995	4.46726	0.0427997	0.0423864	0.161744	0.148082
chrX	24756963	24757063	7632346	0	+	0.25	[0,0.28]	chrX	781725	76	INTRON	INTRON	POLA1	ENSG00000101868.13	ENST00000672178.1:ENST00000379068.8:ENST00000379059.7:ENST00000611764.2:ENST00000480125.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	37	2	2.43761	3.4524349999999995	4.46726	0.0427997	0.0423864	0.161744	0.148082
chr2	26800428	26800528	715898	0	+	0.51	(0.476,0.515]	chr2	82685	1	SS3_PROX	SS3_PROX:INTRON	CENPA	ENSG00000115163.15	ENST00000460030.1	protein_coding	processed_transcript	protein_coding	processed_transcript	2	40	2	2.06491	3.4522649999999997	4.83962	0.0304733	0.00480934	0.143385	0.0602209
chr20	47279154	47279252	7348726	0	-	0.510204	(0.476,0.515]	chr20	749294	20	INTRON	INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000467200.6:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000468376.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	40	2	2.06491	3.4522649999999997	4.83962	0.0304733	0.00480934	0.143385	0.0602209
chr3	47692940	47693040	1684175	0	-	0.49	(0.476,0.515]	chr3	172053	3	SS5_PROX	SS5_PROX:INTRON	SMARCC1	ENSG00000173473.11	ENST00000254480.10:ENST00000425518.5:ENST00000462198.5:ENST00000485737.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	40	2	2.06491	3.4522649999999997	4.83962	0.0304733	0.00480934	0.143385	0.0602209
chr9	112522093	112522193	4186141	0	+	0.49	(0.476,0.515]	chr9	381813	346	INTRON	INTRON	KIAA1958	ENSG00000165185.15	ENST00000337530.11:ENST00000536272.5:ENST00000374244.3	protein_coding	protein_coding	protein_coding	protein_coding	2	40	2	2.06491	3.4522649999999997	4.83962	0.0304733	0.00480934	0.143385	0.0602209
chr15	56956475	56956575	6032490	0	+	0.34	(0.32,0.35]	chr15	574663	350	INTRON	INTRON	TCF12	ENSG00000140262.18	ENST00000438423.6:ENST00000267811.9:ENST00000333725.10:ENST00000560190.5:ENST00000559609.5:ENST00000558908.5:ENST00000557843.5:ENST00000557947.5:ENST00000561152.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	44	2	2.13945	3.45223	4.76501	0.0254517	0.0114287	0.133676	0.0886611
chr22	20538609	20538708	7479663	0	+	0.323232	(0.32,0.35]	chr22	762972	10	INTRON	INTRON	MED15	ENSG00000099917.17	ENST00000445987.5:ENST00000444094.5:ENST00000414658.5:ENST00000486656.5:ENST00000433831.5:ENST00000432052.5:ENST00000292733.11:ENST00000263205.11:ENST00000477824.5:ENST00000406969.5:ENST00000382974.6:ENST00000441501.5:ENST00000445189.5:ENST00000451058.5:ENST00000473028.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	44	2	2.13945	3.45223	4.76501	0.0254517	0.0114287	0.133676	0.0886611
chr6	37986092	37986192	2858697	0	+	0.33	(0.32,0.35]	chr6	270231	557	INTRON	INTRON	ZFAND3	ENSG00000156639.12	ENST00000287218.9:ENST00000373391.6:ENST00000474522.5:ENST00000373389.5	protein_coding	protein_coding	protein_coding	protein_coding	2	44	2	2.13945	3.45223	4.76501	0.0254517	0.0114287	0.133676	0.0886611
chr6	154749211	154749311	3001975	0	+	0.34	(0.32,0.35]	chr6	280737	68	INTRON	INTRON	SCAF8	ENSG00000213079.10	ENST00000367186.7:ENST00000417268.3:ENST00000461219.5:ENST00000367178.8:ENST00000464628.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	44	2	2.13945	3.45223	4.76501	0.0254517	0.0114287	0.133676	0.0886611
chr6	89775133	89775233	3161579	0	-	0.47	(0.44,0.476]	chr6	294825	4	SS3_PROX	SS3_PROX:INTRON	MDN1	ENSG00000112159.12	ENST00000369393.8:ENST00000629399.2:ENST00000439638.1	protein_coding	protein_coding	protein_coding	protein_coding	2	66	2	3.31011	3.45214	3.59417	0.00259023	5.78231e-4	0.0452934	0.0218253
chr17	47148635	47148734	6788970	0	-	0.292929	(0.28,0.32]	chr17	669573	43	INTRON	INTRON	CDC27	ENSG00000004897.12	ENST00000066544.8:ENST00000531206.5:ENST00000533415.5:ENST00000527547.5:ENST00000526866.5:ENST00000525495.6:ENST00000574304.5:ENST00000575830.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	47	2	2.24061	3.4521	4.66359	0.0194267	0.0193496	0.119831	0.108861
chr7	152298070	152298170	3679903	0	-	0.29	(0.28,0.32]	chr7	341623	113	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000684262.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	47	2	2.24061	3.4521	4.66359	0.0194267	0.0193496	0.119831	0.108861
chr20	43708390	43708487	7276477	0	+	0.463918	(0.44,0.476]	chr20	739765	27	INTRON	INTRON	MYBL2	ENSG00000101057.16	ENST00000396863.8:ENST00000217026.5	protein_coding	protein_coding	protein_coding	protein_coding	4	118	2	3.32181	3.452055	3.5823	2.46145e-4	3.73617e-5	0.0144887	0.00489903
chr20	50093917	50094017	7353761	0	-	0.43	(0.408,0.44]	chr20	749863	93	INTRON	INTRON	UBE2V1	ENSG00000244687.13	ENST00000340309.7:ENST00000371677.7:ENST00000415862.6:ENST00000557021.5:ENST00000617119.4:ENST00000625172.3:ENST00000396059.7:ENST00000371674.8:ENST00000371657.9:ENST00000483534.5:ENST00000492371.6:ENST00000486653.5:ENST00000490555.1:ENST00000493090.5:ENST00000467839.5:ENST00000472923.5:ENST00000432266.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	137	2	2.21874	3.45205	4.68536	0.00286408	1.09683e-6	0.0474836	5.99786e-4
chr13	110895028	110895125	5650441	0	-	0.28866000000000003	(0.28,0.32]	chr13	538355	5	EXON_LNCRNA	EXON_LNCRNA:INTRON	ANKRD10:ANKRD10-IT1	ENSG00000088448.14:ENSG00000229152.2	ENST00000267339.6:ENST00000489973.6:ENST00000310847.8:ENST00000465753.1:ENST00000475809.1:ENST00000494859.5:ENST00000426991.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:nonsense_mediated_decay:lncRNA:processed_transcript	31	1063	2	3.2253	3.4519849999999996	3.67867	2.52626e-6	7.36973e-9	0.0011145	2.91854e-5
chr11	652878	652975	4889049	0	-	0.494845	(0.476,0.515]	chr11	457695	11	INTRON	INTRON	DEAF1	ENSG00000177030.19	ENST00000382409.4:ENST00000527170.5:ENST00000685854.1:ENST00000683307.1:ENST00000528864.6:ENST00000525626.6:ENST00000682936.1:ENST00000690068.1:ENST00000692634.1:ENST00000687329.1:ENST00000686001.1:ENST00000689835.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	66	2	1.4095	3.4519200000000003	5.49434	0.054012	1.62782e-4	0.16443	0.0109774
chr7	32753294	32753384	3304437	0	+	0.588889	(0.57,1]	chr7	306864	2	EXON_LNCRNA	EXON_LNCRNA	ZNRF2P1	ENSG00000237004.4	ENST00000650302.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	2	29	2	2.73499	3.4518999999999997	4.16881	0.00574776	0.00237434	0.0681402	0.0438057
chr22	38290690	38290786	7586897	0	-	0.28125	(0.28,0.32]	chr22	776544	1	UTR3	UTR3:EXON_MRNA	CSNK1E	ENSG00000213923.13	ENST00000359867.7:ENST00000396832.6	protein_coding	protein_coding	protein_coding	protein_coding	3	56	2	1.85772	3.4517550000000004	5.04579	0.0300199	0.00714672	0.142135	0.0723634
chr19	12549962	12550055	7139943	0	-	0.526882	(0.515,0.57]	chr19	720341	1	SS5_PROX	SS5_PROX:INTRON	ZNF564	ENSG00000249709.8	ENST00000339282.12:ENST00000427105.1:ENST00000596193.1:ENST00000416136.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	37	2	2.39351	3.451755	4.51	0.0100431	0.00809449	0.0881096	0.0766625
chr20	21235511	21235611	7248023	0	+	0.52	(0.515,0.57]	chr20	735874	23	INTRON	INTRON	KIZ	ENSG00000088970.16	ENST00000619574.4:ENST00000620891.4:ENST00000611685.4:ENST00000616848.4:ENST00000619189.5:ENST00000616679.4:ENST00000619179.4:ENST00000621366.1:ENST00000451772.5:ENST00000419359.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	37	2	2.39351	3.451755	4.51	0.0100431	0.00809449	0.0881096	0.0766625
chr17	10696434	10696534	6725939	0	-	0.33	(0.32,0.35]	chr17	659982	2	INTRON	INTRON	SCO1	ENSG00000133028.12	ENST00000255390.10:ENST00000577335.2:ENST00000577427.1:ENST00000582053.1:ENST00000579396.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	37	2	2.6321	3.4516150000000003	4.27113	0.0268	0.0199982	0.123349	0.120668
chr10	125089317	125089417	4713623	0	-	0.36	(0.35,0.378]	chr10	434903	6	INTRON	INTRON	CTBP2	ENSG00000175029.17	ENST00000337195.9:ENST00000411419.6:ENST00000494626.6:ENST00000531469.5:ENST00000460976.5:ENST00000476817.1:ENST00000530884.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	35	2	2.60341	3.45151	4.29961	0.0275785	0.0158483	0.123904	0.109464
chr11	3773331	3773431	4894926	0	-	0.45	(0.44,0.476]	chr11	458903	3	SS5_PROX	SS5_PROX:INTRON	NUP98	ENSG00000110713.17	ENST00000359171.8:ENST00000324932.12:ENST00000650171.1:ENST00000355260.7:ENST00000397004.8:ENST00000397007.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	66	2	3.35227	3.451475	3.55068	0.0022005699999999998	7.06861e-4	0.0417893	0.0241881
chr17	77144888	77144969	6678675	0	+	0.469136	(0.44,0.476]	chr17	652348	4	UTR5	UTR5:EXON_MRNA:INTRON	SEC14L1	ENSG00000129657.16	ENST00000392476.6:ENST00000589827.5:ENST00000430767.8:ENST00000586429.5:ENST00000586390.5:ENST00000585618.5:ENST00000436233.9:ENST00000443798.8:ENST00000587820.1:ENST00000591786.5:ENST00000591437.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	66	2	3.35227	3.451475	3.55068	0.0022005699999999998	7.06861e-4	0.0417893	0.0241881
chr1	65604537	65604637	139041	0	+	0.57	(0.515,0.57]	chr1	15547	1	SS3_PROX	SS3_PROX:INTRON	LEPR	ENSG00000116678.20	ENST00000371060.7:ENST00000371059.7:ENST00000349533.11:ENST00000616738.4:ENST00000344610.12:ENST00000462765.5:ENST00000371058.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	37	2	1.86007	3.45116	5.04225	0.0526611	0.00131841	0.178401	0.0331539
chr20	58678839	58678937	7290465	0	+	0.561224	(0.515,0.57]	chr20	741764	27	UTR3	UTR3:EXON_MRNA	STX16	ENSG00000124222.22	ENST00000361830.7:ENST00000355957.9:ENST00000371141.8:ENST00000359617.8:ENST00000371132.8:ENST00000358029.8	protein_coding	protein_coding	protein_coding	protein_coding	2	37	2	1.86007	3.45116	5.04225	0.0526611	0.00131841	0.178401	0.0331539
chr6	31748426	31748525	2843573	0	+	0.525253	(0.515,0.57]	chr6	267803	6	INTRON	INTRON	MSH5:MSH5-SAPCD1	ENSG00000204410.16:ENSG00000255152.8	ENST00000375755.8:ENST00000375750.9:ENST00000650702.1:ENST00000493662.6:ENST00000375703.7:ENST00000375740.7:ENST00000423982.6:ENST00000463144.5:ENST00000450148.5:ENST00000497269.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	37	2	1.86007	3.45116	5.04225	0.0526611	0.00131841	0.178401	0.0331539
chr9	133369941	133370041	4370387	0	-	0.54	(0.515,0.57]	chr9	402198	20	INTRON	INTRON	SURF4	ENSG00000148248.14	ENST00000545297.5:ENST00000613129.4:ENST00000618229.4:ENST00000371989.8:ENST00000485435.6:ENST00000467910.5:ENST00000371991.3:ENST00000371982.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	37	2	1.86007	3.45116	5.04225	0.0526611	0.00131841	0.178401	0.0331539
chr5	119119793	119119890	2460258	0	+	0.350515	(0.35,0.378]	chr5	235631	4	INTRON	INTRON	DMXL1	ENSG00000172869.15	ENST00000539542.6:ENST00000503802.5:ENST00000311085.8:ENST00000514151.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	42	2	2.04358	3.4511399999999997	4.8587	0.0329533	0.00695662	0.145171	0.0718189
chr16	14547015	14547114	6448989	0	-	0.454545	(0.44,0.476]	chr16	621213	57	INTRON	INTRON	PARN	ENSG00000140694.17	ENST00000651865.1:ENST00000437198.7:ENST00000651348.1:ENST00000650990.1:ENST00000651760.1:ENST00000652541.1:ENST00000652727.1:ENST00000652066.1:ENST00000651300.1:ENST00000420015.6:ENST00000652051.1:ENST00000341484.11:ENST00000539279.5:ENST00000651049.1:ENST00000650960.1:ENST00000651634.1:ENST00000564113.6:ENST00000564904.5:ENST00000652411.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	30	2	2.66433	3.45094	4.23755	0.0263357	0.0194358	0.122221	0.119831
chr21	39220346	39220445	7464580	0	-	0.444444	(0.44,0.476]	chr21	760426	13	INTRON	INTRON	BRWD1	ENSG00000185658.14	ENST00000333229.6:ENST00000342449.8:ENST00000446924.5:ENST00000380800.7:ENST00000424441.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	30	2	2.66433	3.45094	4.23755	0.0263357	0.0194358	0.122221	0.119831
chr9	33955483	33955578	4244898	0	-	0.473684	(0.44,0.476]	chr9	390419	17	INTRON	INTRON	UBAP2	ENSG00000137073.24	ENST00000379238.7:ENST00000683659.1:ENST00000682239.1:ENST00000683140.1:ENST00000682209.1:ENST00000681980.1:ENST00000360802.6:ENST00000683252.1:ENST00000684158.1:ENST00000682914.1:ENST00000683717.1:ENST00000379239.9:ENST00000683084.1:ENST00000684754.1:ENST00000629575.2:ENST00000684298.1:ENST00000412543.6:ENST00000421278.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	30	2	2.66433	3.45094	4.23755	0.0263357	0.0194358	0.122221	0.119831
chr21	33449459	33449556	7440665	0	-	0.371134	(0.35,0.378]	chr21	759328	8	UTR3	UTR3:EXON_MRNA	TMEM50B	ENSG00000142188.17	ENST00000420455.5:ENST00000542230.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	330	2	2.97128	3.4509	3.93052	4.52251e-5	4.16747e-8	0.0058121	8.25193e-5
chr21	37402080	37402179	7406575	0	+	0.191919	[0,0.28]	chr21	754850	266	INTRON	INTRON	DYRK1A	ENSG00000157540.22	ENST00000646523.1:ENST00000647425.1:ENST00000647188.2:ENST00000647504.1:ENST00000644942.1:ENST00000338785.8:ENST00000643624.1:ENST00000643551.1:ENST00000426672.6:ENST00000398960.7	protein_coding	protein_coding	protein_coding	protein_coding	2	95	2	3.01287	3.4508900000000002	3.88891	0.0115634	2.88288e-4	0.0889104	0.0150627
chr1	113090018	113090118	188262	0	+	0.33	(0.32,0.35]	chr1	20854	160	INTRON	INTRON	LRIG2	ENSG00000198799.12	ENST00000361127.6	protein_coding	protein_coding	protein_coding	protein_coding	3	53	2	1.88255	3.45086	5.01917	0.0269187	0.0055659	0.135288	0.0648867
chr17	4353173	4353273	6712231	0	-	0.45	(0.44,0.476]	chr17	657734	75	INTRON	INTRON	UBE2G1	ENSG00000132388.13	ENST00000396981.7:ENST00000572484.5:ENST00000574633.5:ENST00000571980.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	43	2	1.9039	3.45086	4.99782	0.0501498	0.0013223	0.156383	0.0333932
chr11	63866874	63866974	4801149	0	+	0.39	(0.378,0.408]	chr11	445036	165	INTRON	INTRON	MARK2	ENSG00000072518.22	ENST00000377810.8:ENST00000361128.9:ENST00000508192.5:ENST00000350490.11:ENST00000402010.8:ENST00000502399.7:ENST00000425897.3:ENST00000679216.1:ENST00000513765.7:ENST00000543220.5	protein_coding	protein_coding	protein_coding	protein_coding	2	41	2	2.23831	3.450845	4.66338	0.0179575	0.0103469	0.114265	0.0850389
chr6	20410729	20410829	2827536	0	+	0.51	(0.476,0.515]	chr6	265575	65	INTRON	INTRON	E2F3	ENSG00000112242.16	ENST00000346618.8:ENST00000535432.2	protein_coding	protein_coding	protein_coding	protein_coding	4	105	2	2.86908	3.450825	4.03257	4.03011e-4	9.96835e-5	0.0180338	0.00903184
chr16	30703165	30703265	6338687	0	+	0.43	(0.408,0.44]	chr16	607723	19	INTRON	INTRON	SRCAP	ENSG00000080603.17	ENST00000411466.6:ENST00000262518.9	protein_coding	protein_coding	protein_coding	protein_coding	3	50	2	2.22268	3.4508099999999997	4.67894	0.0087648	0.00770925	0.0788605	0.0784002
chr15	20438091	20438191	6118232	0	-	0.4	(0.378,0.408]	chr15	582371	1	SS5_PROX	SS5_PROX:INTRON	HERC2P3	ENSG00000180229.12	ENST00000426501.5:ENST00000428453.5:ENST00000437318.5:ENST00000430598.5:ENST00000429257.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	3	49	2	1.78011	3.4506949999999996	5.12128	0.0356367	0.00251746	0.151629	0.0446195
chr6	147240168	147240268	2989067	0	+	0.49	(0.476,0.515]	chr6	280013	5	INTRON	INTRON	STXBP5	ENSG00000164506.15	ENST00000321680.11:ENST00000367481.7:ENST00000546097.5:ENST00000367480.7	protein_coding	protein_coding	protein_coding	protein_coding	2	40	2	2.13304	3.4506550000000002	4.76827	0.024866	0.00600704	0.132101	0.0674604
chr19	2186429	2186526	6996395	0	+	0.42268	(0.408,0.44]	chr19	693429	1	INTRON	INTRON	DOT1L	ENSG00000104885.19	ENST00000398665.8:ENST00000686010.1:ENST00000452696.5:ENST00000478937.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	40	2	2.14732	3.4506500000000004	4.75398	0.0237354	0.00703931	0.129075	0.0718189
chr3	32546365	32546465	1649876	0	-	0.43	(0.408,0.44]	chr3	169156	4	SS3_PROX	SS3_PROX:INTRON	DYNC1LI1	ENSG00000144635.9	ENST00000273130.9:ENST00000481915.5:ENST00000432458.6:ENST00000413350.5:ENST00000424991.1:ENST00000475193.1:ENST00000474077.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	40	2	2.14732	3.4506500000000004	4.75398	0.0237354	0.00703931	0.129075	0.0718189
chr6	170624903	170625003	3037700	0	+	0.43	(0.408,0.44]	chr6	283173	89	INTRON	INTRON	ENSG00000287411:ENSG00000230423	ENSG00000287411.1:ENSG00000230423.3	ENST00000667394.1:ENST00000656791.1	lncRNA	lncRNA	lncRNA	lncRNA	2	40	2	2.14732	3.4506500000000004	4.75398	0.0237354	0.00703931	0.129075	0.0718189
chr15	59662000	59662098	6194503	0	-	0.265306	[0,0.28]	chr15	590172	30	UTR3	UTR3:EXON_MRNA:INTRON	ENSG00000227161:BNIP2	ENSG00000227161.1:ENSG00000140299.13	ENST00000441746.1:ENST00000267859.8:ENST00000607373.6	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	2	50	2	1.8986	3.450615	5.00263	0.0531512	0.013055	0.179787	0.093385
chr1	223994082	223994171	320935	0	+	0.325843	(0.32,0.35]	chr1	36964	7	INTRON	INTRON	SEPTIN7P13	ENSG00000185495.10	ENST00000622033.4:ENST00000618315.4	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	3	103	2	2.86836	3.450585	4.03281	0.00250845	8.51676e-5	0.0446195	0.00780562
chr7	158692154	158692247	3688670	0	-	0.505376	(0.476,0.515]	chr7	342263	11	INTRON	INTRON	NCAPG2	ENSG00000146918.20	ENST00000356309.8:ENST00000432615.5:ENST00000409423.5:ENST00000467785.5:ENST00000409339.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	40	2	1.99341	3.45051	4.90761	0.037389	0.00386428	0.155878	0.0542786
chr1	183484372	183484471	273626	0	+	0.424242	(0.408,0.44]	chr1	32019	101	INTRON	INTRON	SMG7	ENSG00000116698.22	ENST00000440812.7:ENST00000367537.7:ENST00000688051.1:ENST00000685780.1:ENST00000508461.5:ENST00000347615.6:ENST00000419169.5:ENST00000444547.6:ENST00000507469.5:ENST00000515829.6:ENST00000367538.1:ENST00000502375.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	40	2	2.00768	3.450475	4.89327	0.035843	0.00458906	0.152216	0.0595107
chr19	15311441	15311541	7147195	0	-	0.45	(0.44,0.476]	chr19	721965	311	INTRON	INTRON	BRD4	ENSG00000141867.19	ENST00000679869.1:ENST00000360016.9:ENST00000594841.5:ENST00000597315.5:ENST00000601941.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	31	2	2.89047	3.450425	4.01038	0.0433743	0.00955699	0.148082	0.0863913
chr6	41793758	41793857	3092962	0	-	0.454545	(0.44,0.476]	chr6	289367	40	UTR3	UTR3:EXON_MRNA	USP49	ENSG00000164663.15	ENST00000682992.1:ENST00000394253.7	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	2.89047	3.450425	4.01038	0.0433743	0.00955699	0.148082	0.0863913
chr7	131396066	131396166	3417128	0	+	0.46	(0.44,0.476]	chr7	319206	67	INTRON	INTRON	MKLN1	ENSG00000128585.18	ENST00000421797.6:ENST00000416992.6:ENST00000429546.5:ENST00000446815.5:ENST00000494286.5:ENST00000352689.11:ENST00000494785.5:ENST00000458153.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	31	2	2.89047	3.450425	4.01038	0.0433743	0.00955699	0.148082	0.0863913
chr15	57005881	57005981	6032985	0	+	0.38	(0.378,0.408]	chr15	574669	41	INTRON	INTRON	TCF12	ENSG00000140262.18	ENST00000438423.6:ENST00000267811.9:ENST00000333725.10:ENST00000560190.5:ENST00000559609.5:ENST00000558908.5:ENST00000557843.5:ENST00000557947.5:ENST00000561152.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	41	2	1.89621	3.4504	5.00459	0.0488044	0.00371142	0.173377	0.0535094
chr22	35268397	35268497	7508091	0	+	0.38	(0.378,0.408]	chr22	766295	24	INTRON	INTRON	HMGXB4	ENSG00000100281.14	ENST00000418170.5:ENST00000216106.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	41	2	1.89621	3.4504	5.00459	0.0488044	0.00371142	0.173377	0.0535094
chr5	132913869	132913968	2724765	0	-	0.383838	(0.378,0.408]	chr5	256321	91	INTRON	INTRON	AFF4	ENSG00000072364.13	ENST00000265343.10:ENST00000378595.7:ENST00000425658.1:ENST00000378593.6:ENST00000477369.5:ENST00000491831.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	41	2	1.89621	3.4504	5.00459	0.0488044	0.00371142	0.173377	0.0535094
chr1	65303654	65303753	136030	0	+	0.444444	(0.44,0.476]	chr1	15346	384	INTRON	INTRON	DNAJC6	ENSG00000116675.16	ENST00000463018.5:ENST00000494710.6:ENST00000263441.11:ENST00000395325.7:ENST00000483402.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	30	2	2.29425	3.45036	4.60647	0.0518406	0.0102339	0.176696	0.0850389
chr17	63582439	63582536	6659976	0	+	0.474227	(0.44,0.476]	chr17	649782	18	EXON_MRNA	EXON_MRNA:INTRON	DCAF7	ENSG00000136485.16	ENST00000431926.7:ENST00000690417.1:ENST00000688972.1:ENST00000686337.1:ENST00000614556.5:ENST00000690481.1:ENST00000693226.1:ENST00000686787.1:ENST00000691063.1:ENST00000415273.2:ENST00000688437.1:ENST00000615512.2:ENST00000688888.1:ENST00000691458.1:ENST00000692877.1:ENST00000688721.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	30	2	2.29425	3.45036	4.60647	0.0518406	0.0102339	0.176696	0.0850389
chr2	63292071	63292171	1133328	0	-	0.46	(0.44,0.476]	chr2	121785	323	INTRON	INTRON	WDPCP	ENSG00000143951.16	ENST00000272321.12:ENST00000409354.6:ENST00000409199.5:ENST00000409120.5:ENST00000398544.7:ENST00000409562.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	30	2	2.29425	3.45036	4.60647	0.0518406	0.0102339	0.176696	0.0850389
chr2	218491990	218492090	1329158	0	-	0.45	(0.44,0.476]	chr2	139187	32	INTRON	INTRON	USP37	ENSG00000135913.11	ENST00000258399.8:ENST00000454775.5:ENST00000415516.5:ENST00000418019.5	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	2.29425	3.45036	4.60647	0.0518406	0.0102339	0.176696	0.0850389
chr3	108577716	108577813	1770237	0	-	0.474227	(0.44,0.476]	chr3	179122	10	INTRON	INTRON	CIP2A	ENSG00000163507.15	ENST00000295746.13:ENST00000491772.5:ENST00000481530.5:ENST00000487834.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	30	2	2.29425	3.45036	4.60647	0.0518406	0.0102339	0.176696	0.0850389
chr4	78820821	78820921	1981830	0	+	0.45	(0.44,0.476]	chr4	198466	1	PRIMIRNA	PRIMIRNA:INTRON	BMP2K:ENSG00000266270	ENSG00000138756.19:ENSG00000266270.1	ENST00000389010.7:ENST00000502613.3:ENST00000502871.5:ENST00000583713.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:nonsense_mediated_decay:primary_miRNA	1	30	2	2.29425	3.45036	4.60647	0.0518406	0.0102339	0.176696	0.0850389
chr5	77453501	77453601	2644678	0	-	0.47	(0.44,0.476]	chr5	251474	3	SS5_PROX	SS5_PROX:INTRON	WDR41	ENSG00000164253.14	ENST00000296679.9:ENST00000515253.5:ENST00000507029.5:ENST00000507654.5:ENST00000509701.5:ENST00000511791.1:ENST00000505129.5:ENST00000506307.5:ENST00000507452.5:ENST00000509892.5:ENST00000515321.5:ENST00000513417.5:ENST00000503035.5:ENST00000514559.5:ENST00000511036.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	30	2	2.29425	3.45036	4.60647	0.0518406	0.0102339	0.176696	0.0850389
chr5	179563763	179563863	2559908	0	+	0.47	(0.44,0.476]	chr5	244723	7	INTRON	INTRON	RUFY1	ENSG00000176783.15	ENST00000319449.9:ENST00000393448.6:ENST00000502984.5:ENST00000393438.6:ENST00000437570.6:ENST00000503514.1:ENST00000508609.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	30	2	2.29425	3.45036	4.60647	0.0518406	0.0102339	0.176696	0.0850389
chr6	30579253	30579341	2840934	0	+	0.465909	(0.44,0.476]	chr6	266910	3	INTRON	INTRON	ABCF1	ENSG00000204574.14	ENST00000376545.7:ENST00000441867.6:ENST00000326195.13:ENST00000468958.1	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	2.29425	3.45036	4.60647	0.0518406	0.0102339	0.176696	0.0850389
chr6	34893396	34893496	2849313	0	+	0.46	(0.44,0.476]	chr6	269222	34	INTRON	INTRON	ANKS1A	ENSG00000064999.15	ENST00000360359.5:ENST00000649117.1:ENST00000650178.1	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	2.29425	3.45036	4.60647	0.0518406	0.0102339	0.176696	0.0850389
chr7	23416816	23416913	3503128	0	-	0.443299	(0.44,0.476]	chr7	326900	2	INTRON	INTRON	IGF2BP3	ENSG00000136231.14	ENST00000258729.8:ENST00000421467.6:ENST00000468263.5:ENST00000479504.5:ENST00000466809.6:ENST00000491719.5:ENST00000465058.5:ENST00000469723.5:ENST00000476938.5:ENST00000468005.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	30	2	2.29425	3.45036	4.60647	0.0518406	0.0102339	0.176696	0.0850389
chr4	121822915	121822992	2233624	0	-	0.467532	(0.44,0.476]	chr4	218797	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CCNA2	ENSG00000145386.11	ENST00000274026.10	protein_coding	protein_coding	protein_coding	protein_coding	4	108	2	2.6062	3.45033	4.29446	0.00148054	2.62765e-5	0.0353633	0.0042413
chr11	48069404	48069504	4790109	0	+	0.36	(0.35,0.378]	chr11	443275	227	INTRON	INTRON	PTPRJ	ENSG00000149177.14	ENST00000418331.7:ENST00000440289.6:ENST00000527952.1:ENST00000534219.5:ENST00000526550.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	72	2	3.44435	3.4502800000000002	3.45621	0.00179102	0.0011842	0.0380316	0.031662
chr1	110021680	110021778	181839	0	+	0.357143	(0.35,0.378]	chr1	20104	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	AHCYL1	ENSG00000168710.18	ENST00000369799.10:ENST00000393614.8:ENST00000359172.3:ENST00000481423.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	60	2	1.97697	3.4502599999999997	4.92355	0.0109711	0.00573514	0.092635	0.0657377
chr16	54919770	54919869	6488440	0	-	0.373737	(0.35,0.378]	chr16	627574	34	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	CRNDE	ENSG00000245694.11	ENST00000613942.2:ENST00000661493.1:ENST00000668556.1:ENST00000660344.1:ENST00000502066.7:ENST00000559598.7:ENST00000688921.1:ENST00000501177.9:ENST00000560029.5:ENST00000661312.1:ENST00000689582.1:ENST00000558031.7:ENST00000689375.1:ENST00000691307.1:ENST00000657142.1:ENST00000557792.2:ENST00000559432.6:ENST00000655114.1:ENST00000560912.6:ENST00000558952.2	lncRNA	lncRNA	lncRNA	lncRNA	4	60	2	1.97697	3.4502599999999997	4.92355	0.0109711	0.00573514	0.092635	0.0657377
chr19	35002644	35002744	7054062	0	+	0.6	(0.57,1]	chr19	703707	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GRAMD1A	ENSG00000089351.15	ENST00000599564.5:ENST00000594597.5:ENST00000317991.10:ENST00000600231.5:ENST00000680623.1:ENST00000603669.5:ENST00000411896.6:ENST00000424536.2:ENST00000598073.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	28	2	2.58733	3.45005	4.31277	0.00454222	0.00346264	0.0595107	0.0539802
chr21	5117231	5117331	7424372	0	-	0.62	(0.57,1]	chr21	757249	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	ENSG00000280071	ENSG00000280071.4	ENST00000624810.3:ENST00000625036.3:ENST00000620528.5:ENST00000620015.4:ENST00000624120.3	protein_coding	protein_coding	protein_coding	protein_coding	2	28	2	2.58733	3.45005	4.31277	0.00454222	0.00346264	0.0595107	0.0539802
chr7	2136081	2136181	3465961	0	-	0.58	(0.57,1]	chr7	324046	266	INTRON	INTRON	MAD1L1	ENSG00000002822.16	ENST00000406869.5:ENST00000399654.6:ENST00000402746.5:ENST00000265854.12:ENST00000464742.5:ENST00000491858.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	28	2	2.58733	3.45005	4.31277	0.00454222	0.00346264	0.0595107	0.0539802
chr16	81316777	81316876	6404238	0	+	0.414141	(0.408,0.44]	chr16	614961	11	INTRON	INTRON	GAN	ENSG00000261609.8	ENST00000648349.2:ENST00000648994.2:ENST00000674788.1:ENST00000650388.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	69	2	3.20437	3.4500450000000003	3.69572	0.00306596	5.37849e-4	0.0509893	0.0214775
chr14	20325538	20325595	5833078	0	-	0.368421	(0.35,0.378]	chr14	553957	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	CCNB1IP1	ENSG00000100814.18	ENST00000353689.8:ENST00000437553.6:ENST00000398160.6:ENST00000358932.9:ENST00000398169.7:ENST00000398163.6:ENST00000556854.5:ENST00000557665.5:ENST00000556563.5:ENST00000553291.5:ENST00000553516.5:ENST00000555348.5:ENST00000557114.5:ENST00000555963.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	33	2	2.92952	3.44992	3.97032	0.0578667	0.00881187	0.167723	0.084878
chr8	123800882	123800982	3852278	0	+	0.37	(0.35,0.378]	chr8	354990	6	INTRON	INTRON	FAM91A1	ENSG00000176853.16	ENST00000334705.12:ENST00000521166.5:ENST00000519721.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	33	2	2.92952	3.44992	3.97032	0.0578667	0.00881187	0.167723	0.084878
chr5	29129891	29129991	2333055	0	+	0.47	(0.44,0.476]	chr5	225153	246	INTRON	INTRON	LINC02109	ENSG00000259786.7	ENST00000658190.1	lncRNA	lncRNA	lncRNA	lncRNA	1	33	2	2.67572	3.449825	4.22393	0.0212064	0.0162322	0.113017	0.109464
chr13	94613882	94613982	5516980	0	+	0.56	(0.515,0.57]	chr13	527605	11	INTRON	INTRON	GPR180	ENSG00000152749.8	ENST00000376958.5	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	2.12971	3.4497750000000003	4.76984	0.0757903	0.00198034	0.194427	0.0411469
chr19	1641072	1641172	7112999	0	-	0.56	(0.515,0.57]	chr19	714651	83	INTRON	INTRON	TCF3	ENSG00000071564.17	ENST00000344749.9:ENST00000611869.5:ENST00000262965.12:ENST00000588136.7:ENST00000453954.6:ENST00000395423.7:ENST00000587235.6:ENST00000586318.1	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	2.12971	3.4497750000000003	4.76984	0.0757903	0.00198034	0.194427	0.0411469
chr19	10724741	10724841	7013836	0	+	0.54	(0.515,0.57]	chr19	696920	57	INTRON	INTRON	DNM2	ENSG00000079805.19	ENST00000683738.1:ENST00000682285.1:ENST00000682524.1:ENST00000355667.11:ENST00000389253.9:ENST00000585892.5:ENST00000359692.10:ENST00000408974.8:ENST00000586939.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	29	2	2.12971	3.4497750000000003	4.76984	0.0757903	0.00198034	0.194427	0.0411469
chr8	143459317	143459416	4082217	0	-	0.525253	(0.515,0.57]	chr8	370865	178	INTRON	INTRON	ZC3H3	ENSG00000014164.7	ENST00000262577.6	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	2.12971	3.4497750000000003	4.76984	0.0757903	0.00198034	0.194427	0.0411469
chr16	10448239	10448338	6286907	0	+	0.353535	(0.35,0.378]	chr16	602005	74	INTRON	INTRON	ATF7IP2	ENSG00000166669.14	ENST00000396559.5:ENST00000396560.6:ENST00000543967.5:ENST00000562102.6:ENST00000535850.5:ENST00000568027.5:ENST00000324570.9:ENST00000356427.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	42	2	2.10859	3.4496900000000004	4.79079	0.0272722	0.00846427	0.136494	0.0776969
chr2	135062000	135062098	872766	0	+	0.408163	(0.378,0.408]	chr2	97739	16	EXON_LNCRNA	EXON_LNCRNA:INTRON	RAB3GAP1	ENSG00000115839.19	ENST00000539493.3:ENST00000688088.1:ENST00000693554.1:ENST00000690785.1:ENST00000689880.1:ENST00000264158.13:ENST00000686403.1:ENST00000690208.1:ENST00000691478.1:ENST00000686114.1:ENST00000685967.1:ENST00000442034.5:ENST00000687199.1:ENST00000691339.1:ENST00000688182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	225	2	2.95425	3.4495750000000003	3.9449	7.55068e-5	4.60276e-7	0.00777227	3.58199e-4
chr16	89424507	89424606	6542940	0	-	0.494949	(0.476,0.515]	chr16	634275	24	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	55	2	1.63962	3.449535	5.25945	0.0346854	0.00111445	0.148144	0.0306328
chr17	31997864	31997962	6596300	0	+	0.377551	(0.35,0.378]	chr17	641615	6	INTRON	INTRON	SUZ12	ENSG00000178691.11	ENST00000322652.10:ENST00000580398.1:ENST00000578106.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	42	2	1.9755	3.449525	4.92355	0.0398617	0.00573514	0.161534	0.0657377
chr21	37415565	37415665	7406712	0	+	0.49	(0.476,0.515]	chr21	754860	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	DYRK1A	ENSG00000157540.22	ENST00000646523.1:ENST00000647425.1:ENST00000647188.2:ENST00000647504.1:ENST00000644942.1:ENST00000338785.8:ENST00000643624.1:ENST00000643551.1:ENST00000426672.6:ENST00000398960.7	protein_coding	protein_coding	protein_coding	protein_coding	3	89	2	2.69886	3.4494949999999998	4.20013	0.00385209	2.43832e-5	0.0542786	0.00386122
chr21	45597689	45597789	7420721	0	+	0.52	(0.515,0.57]	chr21	756625	14	EXON_LNCRNA	EXON_LNCRNA	LINC01694	ENSG00000233922.4	ENST00000441095.2	lncRNA	lncRNA	lncRNA	lncRNA	3	56	2	2.60978	3.4494949999999998	4.28921	0.00990051	0.00151689	0.0877296	0.0352794
chr12	93501320	93501420	5189598	0	+	0.21	[0,0.28]	chr12	490864	2	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MRPL42	ENSG00000198015.14	ENST00000549982.6:ENST00000552217.6:ENST00000393128.8:ENST00000358678.7:ENST00000551396.5:ENST00000549561.6:ENST00000552938.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	50	2	1.84147	3.449475	5.05748	0.0610416	0.0113653	0.193277	0.0886611
chr6	63647494	63647594	2883407	0	+	0.27	[0,0.28]	chr6	273559	3	INTRON	INTRON	PHF3	ENSG00000118482.12	ENST00000262043.8:ENST00000506783.5:ENST00000481385.6:ENST00000515594.5:ENST00000494284.6:ENST00000509876.5:ENST00000509330.5:ENST00000393387.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	50	2	1.84147	3.449475	5.05748	0.0610416	0.0113653	0.193277	0.0886611
chr9	137662111	137662211	4223907	0	+	0.25	[0,0.28]	chr9	388170	107	INTRON	INTRON	EHMT1	ENSG00000181090.21	ENST00000462484.5:ENST00000371394.6:ENST00000630754.2:ENST00000460843.6:ENST00000626216.2:ENST00000629335.2:ENST00000637335.1:ENST00000636376.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	50	2	1.84147	3.449475	5.05748	0.0610416	0.0113653	0.193277	0.0886611
chrX	302669	302767	7605485	0	+	0.571429	(0.57,1]	chrX	779420	35	UTR3	UTR3:EXON_MRNA	PLCXD1	ENSG00000182378.15	ENST00000399012.6:ENST00000381657.8	protein_coding	protein_coding	protein_coding	protein_coding	27	377	2	3.07615	3.449445	3.82274	2.6097e-8	1.51892e-11	6.19093e-5	3.08192e-7
chr20	41359056	41359152	7275355	0	+	0.447917	(0.44,0.476]	chr20	739585	3	UTR3	UTR3:EXON_MRNA	LPIN3	ENSG00000132793.12	ENST00000373257.8:ENST00000632009.1	protein_coding	protein_coding	protein_coding	protein_coding	7	196	2	3.19786	3.449335	3.70081	1.82961e-5	5.3674e-6	0.00327543	0.00172277
chr5	138175501	138175598	2731404	0	-	0.463918	(0.44,0.476]	chr5	257187	23	INTRON	INTRON	BRD8	ENSG00000112983.18	ENST00000254900.10:ENST00000402931.5:ENST00000230901.9:ENST00000454473.5:ENST00000418329.5:ENST00000441656.5:ENST00000411594.6:ENST00000512140.5:ENST00000428808.5:ENST00000432618.5:ENST00000425764.5:ENST00000450756.5:ENST00000515254.1:ENST00000430331.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	89	2	3.42668	3.44924	3.4718	0.00136358	9.22416e-5	0.0336321	0.00802983
chr2	87519055	87519155	826567	0	+	0.56	(0.515,0.57]	chr2	92452	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	CYTOR:ENSG00000284879	ENSG00000222041.12:ENSG00000284879.1	ENST00000642796.1:ENST00000643589.1:ENST00000642451.1:ENST00000646386.1:ENST00000644478.1:ENST00000409139.6:ENST00000331944.10:ENST00000644125.1:ENST00000643743.1:ENST00000644577.1:ENST00000643276.1:ENST00000409898.2:ENST00000419680.6:ENST00000644976.1:ENST00000643070.1:ENST00000646855.1:ENST00000414584.1:ENST00000455131.5:ENST00000646636.1:ENST00000642293.1:ENST00000423846.5:ENST00000644040.1:ENST00000645138.1:ENST00000437561.2:ENST00000629257.1:ENST00000645729.1:ENST00000413202.1:ENST00000643509.1:ENST00000409054.2:ENST00000643321.1	lncRNA	lncRNA	lncRNA	lncRNA	2	39	2	2.21273	3.449205	4.68568	0.0196151	0.00270027	0.109486	0.0479115
chr16	75645819	75645914	6530248	0	-	0.336842	(0.32,0.35]	chr16	632609	10	INTRON	INTRON	KARS1	ENSG00000065427.15	ENST00000319410.9:ENST00000302445.8:ENST00000568378.5:ENST00000564578.5:ENST00000562875.5:ENST00000566560.5:ENST00000566249.5:ENST00000568682.5:ENST00000570215.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	62	2	2.03198	3.4491	4.86622	0.0193728	0.00354075	0.108916	0.0546236
chr1	23164266	23164366	398972	0	-	0.53	(0.515,0.57]	chr1	47812	307	INTRON	INTRON	LUZP1	ENSG00000169641.14	ENST00000302291.8:ENST00000314174.5:ENST00000471849.5	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	2.60899	3.4490999999999996	4.28921	0.0232669	0.00990051	0.118148	0.0877296
chr12	76528243	76528343	5372065	0	-	0.53	(0.515,0.57]	chr12	512491	403	INTRON	INTRON	OSBPL8	ENSG00000091039.17	ENST00000261183.8:ENST00000393249.6:ENST00000611266.4:ENST00000393250.8:ENST00000547540.5:ENST00000553139.5:ENST00000549570.5:ENST00000550628.5:ENST00000549646.5:ENST00000551927.5:ENST00000547544.5:ENST00000552178.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	29	2	2.60899	3.4490999999999996	4.28921	0.0232669	0.00990051	0.118148	0.0877296
chr6	35904778	35904878	3088662	0	-	0.34	(0.32,0.35]	chr6	288893	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	SRPK1	ENSG00000096063.16	ENST00000373825.7:ENST00000423325.6:ENST00000346162.10:ENST00000361690.7:ENST00000510290.5:ENST00000508473.5:ENST00000512445.5:ENST00000513367.1:ENST00000507909.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	48	2	1.77704	3.449015	5.12099	0.0719969	0.00143632	0.187322	0.0347139
chr2	201151945	201152045	981908	0	+	0.41	(0.408,0.44]	chr2	105433	17	INTRON	INTRON	CFLAR	ENSG00000003402.21	ENST00000443227.5:ENST00000309955.8:ENST00000341582.10:ENST00000342795.9:ENST00000423241.6:ENST00000439154.6:ENST00000457277.5:ENST00000479953.6:ENST00000474842.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	44	2	2.11447	3.448975	4.78348	0.0285207	0.00290352	0.12666	0.0494641
chr13	25320037	25320136	5457365	0	+	0.30303	(0.28,0.32]	chr13	522919	8	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	NUP58	ENSG00000139496.17	ENST00000481980.2:ENST00000490231.6:ENST00000695571.1:ENST00000477876.2:ENST00000695572.1:ENST00000463407.6:ENST00000695573.1:ENST00000381736.8:ENST00000695583.1:ENST00000466694.6:ENST00000381718.8:ENST00000695575.1:ENST00000695574.1:ENST00000495460.2:ENST00000381747.7:ENST00000695576.1:ENST00000394327.2:ENST00000695577.1:ENST00000695584.1:ENST00000476553.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	67	2	1.96841	3.44885	4.92929	0.0124199	0.0098607	0.0973643	0.0838128
chr1	42955052	42955152	433110	0	-	0.51	(0.476,0.515]	chr1	52506	3	INTRON	INTRON	SLC2A1	ENSG00000117394.24	ENST00000426263.10:ENST00000630287.2:ENST00000675112.1:ENST00000674765.1:ENST00000625233.2:ENST00000372500.4:ENST00000415851.6:ENST00000630821.1:ENST00000460369.3:ENST00000676097.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	30	2	2.65268	3.448845	4.24501	0.0247713	0.0201975	0.121243	0.12011
chr2	39417896	39417996	1104107	0	-	0.48	(0.476,0.515]	chr2	118511	382	INTRON	INTRON	MAP4K3	ENSG00000011566.15	ENST00000263881.8:ENST00000341681.9:ENST00000429397.5:ENST00000437968.1:ENST00000484274.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	30	2	2.65268	3.448845	4.24501	0.0247713	0.0201975	0.121243	0.12011
chr2	241618793	241618893	1349136	0	-	0.5	(0.476,0.515]	chr2	141770	14	INTRON	INTRON	THAP4	ENSG00000176946.13	ENST00000407315.6	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	2.65268	3.448845	4.24501	0.0247713	0.0201975	0.121243	0.12011
chr7	140349361	140349455	3660781	0	-	0.478723	(0.476,0.515]	chr7	339808	2	INTRON	INTRON	SLC37A3	ENSG00000157800.18	ENST00000477571.5:ENST00000326232.14:ENST00000447932.6:ENST00000340308.7:ENST00000492027.5:ENST00000460560.5:ENST00000485734.1:ENST00000487319.1:ENST00000485861.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	30	2	2.65268	3.448845	4.24501	0.0247713	0.0201975	0.121243	0.12011
chr10	18584648	18584748	4570040	0	-	0.36	(0.35,0.378]	chr10	421489	323	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	2	46	2	1.93432	3.44881	4.9633	0.0481438	0.00198929	0.153019	0.0411469
chr12	122060752	122060851	5239789	0	+	0.363636	(0.35,0.378]	chr12	497471	17	UTR3	UTR3:EXON_MRNA	BCL7A	ENSG00000110987.9	ENST00000538010.5:ENST00000261822.5	protein_coding	protein_coding	protein_coding	protein_coding	2	46	2	1.93432	3.44881	4.9633	0.0481438	0.00198929	0.153019	0.0411469
chr16	15886676	15886775	6451938	0	-	0.393939	(0.378,0.408]	chr16	621935	21	INTRON	INTRON	CEP20	ENSG00000133393.13	ENST00000255759.11:ENST00000573968.5:ENST00000573087.5:ENST00000573396.5:ENST00000575744.5:ENST00000572415.5:ENST00000575073.5:ENST00000573429.5:ENST00000575938.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	92	2	2.86464	3.44879	4.03294	0.00215581	6.52685e-5	0.0417866	0.00669119
chr17	1885425	1885523	6546551	0	+	0.428571	(0.408,0.44]	chr17	635000	11	INTRON	INTRON	RPA1	ENSG00000132383.12	ENST00000254719.10:ENST00000574049.1	protein_coding	protein_coding	protein_coding	protein_coding	3	48	2	1.81759	3.44871	5.07983	0.0316273	0.00247652	0.144405	0.0446195
chr6	131597886	131597986	3221347	0	-	0.42	(0.408,0.44]	chr6	299366	2	SS5_PROX	SS5_PROX:INTRON	MED23	ENSG00000112282.18	ENST00000354577.8:ENST00000368068.8:ENST00000368060.7:ENST00000368058.5	protein_coding	protein_coding	protein_coding	protein_coding	3	48	2	1.81759	3.44871	5.07983	0.0316273	0.00247652	0.144405	0.0446195
chr1	1516288	1516388	1891	0	+	0.62	(0.57,1]	chr1	448	2	SS5_PROX	SS5_PROX:INTRON	ATAD3A	ENSG00000197785.14	ENST00000378756.8:ENST00000672388.1:ENST00000378755.9:ENST00000339113.9:ENST00000536055.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	27	2	2.02391	3.44862	4.87333	0.0339274	3.21412e-4	0.134508	0.0159645
chr13	113183075	113183172	5651791	0	-	0.43299	(0.408,0.44]	chr13	538577	15	INTRON	INTRON	PCID2	ENSG00000126226.22	ENST00000337344.9:ENST00000622406.4:ENST00000375479.6:ENST00000375477.5:ENST00000246505.9:ENST00000375459.5:ENST00000493650.5:ENST00000375457.2:ENST00000473462.5:ENST00000475433.5:ENST00000480971.5:ENST00000484641.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	32	2	2.27698	3.448535	4.62009	0.0583528	0.00504155	0.167723	0.0646039
chr17	45037335	45037434	6781964	0	-	0.414141	(0.408,0.44]	chr17	669007	19	INTRON	INTRON	DCAKD	ENSG00000172992.13	ENST00000342350.10:ENST00000452796.7:ENST00000651974.1:ENST00000310604.9:ENST00000688601.1:ENST00000614054.5:ENST00000687739.1:ENST00000688897.1:ENST00000687955.1:ENST00000688577.1:ENST00000588499.6:ENST00000684999.1:ENST00000692180.1:ENST00000693065.1:ENST00000691739.1:ENST00000687525.1:ENST00000686754.1:ENST00000687463.1:ENST00000685712.1:ENST00000592902.6:ENST00000685986.1:ENST00000692907.1:ENST00000689764.1:ENST00000687414.1:ENST00000693328.1:ENST00000688568.1:ENST00000588295.2:ENST00000593094.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	32	2	2.27698	3.448535	4.62009	0.0583528	0.00504155	0.167723	0.0646039
chr7	149564903	149565003	3672025	0	-	0.42	(0.408,0.44]	chr7	340834	9	INTRON	INTRON	ZNF767P	ENSG00000133624.14	ENST00000463567.5:ENST00000472212.5:ENST00000684939.1:ENST00000690388.1:ENST00000486492.5:ENST00000481762.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	1	32	2	2.27698	3.448535	4.62009	0.0583528	0.00504155	0.167723	0.0646039
chr9	34047429	34047528	4245837	0	-	0.424242	(0.408,0.44]	chr9	390499	142	INTRON	INTRON	UBAP2	ENSG00000137073.24	ENST00000379238.7:ENST00000683659.1:ENST00000682239.1:ENST00000683140.1:ENST00000682209.1:ENST00000681980.1:ENST00000360802.6:ENST00000683252.1:ENST00000684158.1:ENST00000682914.1:ENST00000683717.1:ENST00000379239.9:ENST00000683084.1:ENST00000684754.1:ENST00000629575.2:ENST00000684298.1:ENST00000480885.5:ENST00000459988.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	32	2	2.27698	3.448535	4.62009	0.0583528	0.00504155	0.167723	0.0646039
chr2	174376723	174376823	1271155	0	-	0.51	(0.476,0.515]	chr2	134338	178	INTRON	INTRON	CIR1	ENSG00000138433.16	ENST00000342016.8:ENST00000377973.4	protein_coding	protein_coding	protein_coding	protein_coding	3	48	2	1.80284	3.4485349999999997	5.09423	0.033161	0.00204588	0.145899	0.04086
chr12	123588131	123588226	5243041	0	+	0.431579	(0.408,0.44]	chr12	498274	1	INTRON	INTRON	TMED2	ENSG00000086598.11	ENST00000438031.2:ENST00000543425.1:ENST00000262225.8:ENST00000509052.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	30	2	2.66579	3.4483749999999995	4.23096	0.0278028	0.019342	0.123904	0.119831
chr17	67910261	67910318	6668564	0	+	0.421053	(0.408,0.44]	chr17	650606	1	INTRON	INTRON	BPTF	ENSG00000171634.19	ENST00000306378.11:ENST00000544778.6:ENST00000321892.8:ENST00000342579.8:ENST00000644067.1:ENST00000424123.7	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	2.66579	3.4483749999999995	4.23096	0.0278028	0.019342	0.123904	0.119831
chr2	44356568	44356668	1111060	0	-	0.43	(0.408,0.44]	chr2	119235	2	SS3_PROX	SS3_PROX:INTRON	PREPL	ENSG00000138078.16	ENST00000425263.5:ENST00000409411.6:ENST00000426481.5:ENST00000541738.5:ENST00000409957.5:ENST00000409936.5:ENST00000409272.5:ENST00000260648.10:ENST00000410081.5:ENST00000378520.7:ENST00000378511.7:ENST00000540817.1:ENST00000438314.1:ENST00000477410.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	30	2	2.66579	3.4483749999999995	4.23096	0.0278028	0.019342	0.123904	0.119831
chr21	10515235	10515332	7369167	0	+	0.412371	(0.408,0.44]	chr21	752058	6	INTRON	INTRON	BAGE2:ENSG00000273840	ENSG00000187172.15:ENSG00000273840.1	ENST00000496773.1:ENST00000612267.1	lncRNA	lncRNA	lncRNA:transcribed_unprocessed_pseudogene	lncRNA:transcribed_unprocessed_pseudogene	1	30	2	2.66579	3.4483749999999995	4.23096	0.0278028	0.019342	0.123904	0.119831
chr4	48227576	48227676	2136282	0	-	0.43	(0.408,0.44]	chr4	210604	510	INTRON	INTRON	TEC	ENSG00000135605.13	ENST00000381501.8:ENST00000505452.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	30	2	2.66579	3.4483749999999995	4.23096	0.0278028	0.019342	0.123904	0.119831
chr8	123383859	123383958	4042517	0	-	0.434343	(0.408,0.44]	chr8	368789	28	INTRON	INTRON	ATAD2	ENSG00000156802.13	ENST00000287394.10:ENST00000517666.5:ENST00000521903.5:ENST00000519124.5:ENST00000521496.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	30	2	2.66579	3.4483749999999995	4.23096	0.0278028	0.019342	0.123904	0.119831
chrX	47476323	47476422	7814483	0	-	0.414141	(0.408,0.44]	chrX	796441	82	INTRON	INTRON	ZNF41	ENSG00000147124.13	ENST00000684689.1:ENST00000377065.8:ENST00000313116.11	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	2.66579	3.4483749999999995	4.23096	0.0278028	0.019342	0.123904	0.119831
chr1	10487783	10487883	23104	0	+	0.51	(0.476,0.515]	chr1	2497	124	INTRON	INTRON	PEX14	ENSG00000142655.13	ENST00000472851.1:ENST00000356607.9:ENST00000491661.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	30	2	2.28264	3.44833	4.61402	0.0534132	0.00947755	0.179876	0.0817766
chr1	151417996	151418096	554532	0	-	0.49	(0.476,0.515]	chr1	65503	52	INTRON	INTRON	POGZ	ENSG00000143442.22	ENST00000271715.7:ENST00000358476.7:ENST00000392723.5:ENST00000368863.6:ENST00000409503.5:ENST00000531094.5:ENST00000491586.5:ENST00000529669.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	30	2	2.28264	3.44833	4.61402	0.0534132	0.00947755	0.179876	0.0817766
chr1	200579357	200579456	617310	0	-	0.50505	(0.476,0.515]	chr1	72980	33	INTRON	INTRON	KIF14	ENSG00000118193.12	ENST00000614960.4:ENST00000367350.5	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	2.28264	3.44833	4.61402	0.0534132	0.00947755	0.179876	0.0817766
chr1	245905539	245905639	674679	0	-	0.51	(0.476,0.515]	chr1	79681	413	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000366517.5:ENST00000366516.5:ENST00000490107.6:ENST00000470510.5:ENST00000493441.5:ENST00000488153.5:ENST00000492487.5:ENST00000391836.3:ENST00000464398.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	30	2	2.28264	3.44833	4.61402	0.0534132	0.00947755	0.179876	0.0817766
chr10	80175706	80175806	4657960	0	-	0.49	(0.476,0.515]	chr10	429135	2	SS5_PROX	SS5_PROX:INTRON	ANXA11	ENSG00000122359.18	ENST00000372231.7:ENST00000438331.5:ENST00000422982.8:ENST00000463657.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	30	2	2.28264	3.44833	4.61402	0.0534132	0.00947755	0.179876	0.0817766
chr11	46573035	46573135	4947050	0	-	0.48	(0.476,0.515]	chr11	463525	236	INTRON	INTRON	AMBRA1	ENSG00000110497.15	ENST00000683756.1:ENST00000534300.5:ENST00000533727.5:ENST00000314845.7:ENST00000458649.6:ENST00000528950.1:ENST00000531542.1:ENST00000526606.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	30	2	2.28264	3.44833	4.61402	0.0534132	0.00947755	0.179876	0.0817766
chr12	104302774	104302874	5210168	0	+	0.48	(0.476,0.515]	chr12	493210	113	INTRON	INTRON	TXNRD1	ENSG00000198431.17	ENST00000525566.6:ENST00000526266.5:ENST00000503506.6:ENST00000526691.5:ENST00000531691.5:ENST00000526390.5:ENST00000531689.5:ENST00000529546.5:ENST00000529751.1:ENST00000528079.6:ENST00000526580.5:ENST00000529784.5:ENST00000524698.5:ENST00000527688.5:ENST00000527335.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	30	2	2.28264	3.44833	4.61402	0.0534132	0.00947755	0.179876	0.0817766
chr16	68277943	68278043	6372004	0	+	0.51	(0.476,0.515]	chr16	612350	23	INTRON	INTRON	SLC7A6	ENSG00000103064.15	ENST00000618043.4:ENST00000648130.1:ENST00000219343.11:ENST00000379152.7:ENST00000566834.5:ENST00000566454.5:ENST00000563080.1:ENST00000566579.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	30	2	2.28264	3.44833	4.61402	0.0534132	0.00947755	0.179876	0.0817766
chr21	35031143	35031243	7448700	0	-	0.51	(0.476,0.515]	chr21	759873	1378	INTRON	INTRON	RUNX1	ENSG00000159216.19	ENST00000300305.7:ENST00000675419.1:ENST00000437180.5:ENST00000482318.5:ENST00000455571.5:ENST00000475045.6:ENST00000416754.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	30	2	2.28264	3.44833	4.61402	0.0534132	0.00947755	0.179876	0.0817766
chr3	120072375	120072475	1795236	0	-	0.48	(0.476,0.515]	chr3	180282	43	INTRON	INTRON	GSK3B	ENSG00000082701.17	ENST00000264235.13:ENST00000316626.6:ENST00000678439.1:ENST00000650344.2:ENST00000677788.1:ENST00000678245.1:ENST00000677169.1:ENST00000677128.1:ENST00000677530.1:ENST00000677034.1:ENST00000679131.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	30	2	2.28264	3.44833	4.61402	0.0534132	0.00947755	0.179876	0.0817766
chr4	159224060	159224160	2074712	0	+	0.48	(0.476,0.515]	chr4	205190	131	INTRON	INTRON	RAPGEF2	ENSG00000109756.10	ENST00000644474.1:ENST00000691494.1:ENST00000505478.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	30	2	2.28264	3.44833	4.61402	0.0534132	0.00947755	0.179876	0.0817766
chr7	72977360	72977460	3553888	0	-	0.5	(0.476,0.515]	chr7	330638	69	INTRON	INTRON	STAG3L3	ENSG00000174353.17	ENST00000436857.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	1	30	2	2.28264	3.44833	4.61402	0.0534132	0.00947755	0.179876	0.0817766
chr8	96234731	96234828	3994950	0	-	0.494845	(0.476,0.515]	chr8	365834	3	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	UQCRB	ENSG00000156467.10	ENST00000287022.10:ENST00000517603.5:ENST00000521036.5:ENST00000518876.1:ENST00000518406.5:ENST00000523920.1:ENST00000519322.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	30	2	2.28264	3.44833	4.61402	0.0534132	0.00947755	0.179876	0.0817766
chr1	40085515	40085615	428491	0	-	0.58	(0.57,1]	chr1	52098	33	INTRON	INTRON	PPT1	ENSG00000131238.18	ENST00000641471.1:ENST00000642050.2:ENST00000641083.1:ENST00000641319.1:ENST00000530704.6:ENST00000433473.8:ENST00000439754.6:ENST00000449045.7:ENST00000641691.1:ENST00000641236.1:ENST00000529905.5:ENST00000641381.1:ENST00000641924.1:ENST00000527311.7:ENST00000372779.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	27	2	2.33295	3.4482999999999997	4.56365	0.0122896	0.00129848	0.091087	0.0333764
chr1	113086124	113086224	188223	0	+	0.45	(0.44,0.476]	chr1	20854	121	INTRON	INTRON	LRIG2	ENSG00000198799.12	ENST00000361127.6	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	2.46135	3.4482999999999997	4.43525	0.0374637	0.00897296	0.140008	0.0849778
chr10	897917	898016	4542248	0	-	0.454545	(0.44,0.476]	chr10	419298	82	INTRON	INTRON	LARP4B	ENSG00000107929.16	ENST00000316157.8:ENST00000690516.1:ENST00000476529.5:ENST00000406525.6:ENST00000481118.1:ENST00000412411.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	32	2	2.46135	3.4482999999999997	4.43525	0.0374637	0.00897296	0.140008	0.0849778
chr10	68424580	68424679	4639281	0	-	0.585859	(0.57,1]	chr10	426660	13	INTRON	INTRON	DNA2	ENSG00000138346.15	ENST00000358410.8:ENST00000551118.6:ENST00000399179.6:ENST00000399180.3:ENST00000440722.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	27	2	2.33295	3.4482999999999997	4.56365	0.0122896	0.00129848	0.091087	0.0333764
chr5	94668282	94668380	2429422	0	+	0.469388	(0.44,0.476]	chr5	233439	19	INTRON	INTRON	SLF1	ENSG00000133302.13	ENST00000265140.10	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	2.46135	3.4482999999999997	4.43525	0.0374637	0.00897296	0.140008	0.0849778
chr1	112609462	112609559	523483	0	-	0.484536	(0.476,0.515]	chr1	61586	15	INTRON	INTRON	ST7L	ENSG00000007341.19	ENST00000358039.9:ENST00000490715.5:ENST00000360743.8:ENST00000361846.7:ENST00000480988.5:ENST00000369669.5:ENST00000490067.5:ENST00000343210.11:ENST00000369666.5:ENST00000497457.5:ENST00000463235.5:ENST00000418497.5:ENST00000497235.5:ENST00000369664.1:ENST00000466360.5:ENST00000479436.5:ENST00000459630.5:ENST00000470519.5:ENST00000477332.5:ENST00000473206.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	31	2	2.87879	3.4482799999999996	4.01777	0.0411361	0.00999149	0.1451	0.0879541
chr10	30335803	30335903	4587507	0	-	0.49	(0.476,0.515]	chr10	422969	88	INTRON	INTRON	MTPAP	ENSG00000107951.15	ENST00000263063.9:ENST00000488290.5:ENST00000417581.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	31	2	2.87879	3.4482799999999996	4.01777	0.0411361	0.00999149	0.1451	0.0879541
chr1	37975490	37975589	426381	0	-	0.454545	(0.44,0.476]	chr1	51690	54	INTRON	INTRON	SF3A3	ENSG00000183431.12	ENST00000373019.5:ENST00000460925.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	40	2	2.21079	3.4482150000000003	4.68564	0.0194581	0.00816201	0.119831	0.0766625
chr8	140940179	140940279	4079464	0	-	0.45	(0.44,0.476]	chr8	370572	57	INTRON	INTRON	PTK2	ENSG00000169398.20	ENST00000696786.1:ENST00000522684.5:ENST00000395218.3:ENST00000521059.5:ENST00000519993.5:ENST00000340930.7:ENST00000519419.5:ENST00000524357.5:ENST00000521791.5:ENST00000523067.5:ENST00000520828.5:ENST00000519881.5:ENST00000520892.5:ENST00000523803.5:ENST00000521907.5:ENST00000517453.5:ENST00000520045.5:ENST00000521332.5:ENST00000524040.5:ENST00000523679.1:ENST00000524257.5:ENST00000523797.1:ENST00000519635.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	40	2	2.21079	3.4482150000000003	4.68564	0.0194581	0.00816201	0.119831	0.0766625
chr2	181930147	181930246	937351	0	+	0.282828	(0.28,0.32]	chr2	102759	6	UTR3	UTR3:EXON_MRNA	ITPRID2	ENSG00000138434.17	ENST00000431877.7:ENST00000320370.11:ENST00000409001.5:ENST00000440623.5:ENST00000416081.5:ENST00000491720.5:ENST00000409136.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	57	2	2.02902	3.448165	4.86731	0.0174423	0.0116253	0.11269	0.0889104
chr13	95149456	95149556	5638335	0	-	0.35	(0.32,0.35]	chr13	537060	6	INTRON	INTRON	ABCC4	ENSG00000125257.16	ENST00000645237.2:ENST00000643051.1:ENST00000643842.1:ENST00000646439.1:ENST00000643816.1:ENST00000536256.3:ENST00000643556.1:ENST00000629385.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	61	2	1.76503	3.4481300000000004	5.13123	0.0240772	0.00394704	0.129859	0.0548259
chr12	50772696	50772796	5139728	0	+	0.45	(0.44,0.476]	chr12	484698	77	INTRON	INTRON	ATF1	ENSG00000123268.9	ENST00000552510.5:ENST00000549612.5:ENST00000262053.8:ENST00000551831.5:ENST00000552487.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	43	2	1.77101	3.4480700000000004	5.12513	0.0693975	7.96486e-4	0.184298	0.0258804
chr8	123223545	123223643	4041300	0	-	0.44898	(0.44,0.476]	chr8	368565	29	INTRON	INTRON	C8orf76	ENSG00000189376.12	ENST00000276704.6:ENST00000519791.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	43	2	1.77101	3.4480700000000004	5.12513	0.0693975	7.96486e-4	0.184298	0.0258804
chr9	124379398	124379498	4346290	0	-	0.45	(0.44,0.476]	chr9	399153	221	INTRON	INTRON	PSMB7	ENSG00000136930.13	ENST00000259457.8:ENST00000498485.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	43	2	1.77101	3.4480700000000004	5.12513	0.0693975	7.96486e-4	0.184298	0.0258804
chr1	151616062	151616161	225760	0	+	0.393939	(0.378,0.408]	chr1	25862	12	INTRON	INTRON	SNX27	ENSG00000143376.14	ENST00000642376.1:ENST00000368843.8:ENST00000458013.7:ENST00000368841.7:ENST00000642479.1:ENST00000642349.1:ENST00000643179.1:ENST00000643814.1:ENST00000642582.1:ENST00000644970.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	52	2	2.31181	3.4480399999999998	4.58427	0.0128325	0.00548372	0.0926667	0.0671431
chr7	66553084	66553184	3539717	0	-	0.47	(0.44,0.476]	chr7	330242	70	INTRON	INTRON	RABGEF1P1	ENSG00000229180.8	ENST00000639011.1:ENST00000692299.1:ENST00000686269.1:ENST00000649635.1:ENST00000686397.1:ENST00000690339.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	2	40	2	1.93084	3.447875	4.96491	0.0443175	0.0034249	0.162302	0.0517761
chr4	498155	498255	2093163	0	-	0.36	(0.35,0.378]	chr4	206795	241	INTRON	INTRON	ZNF721	ENSG00000182903.16	ENST00000511833.3:ENST00000338977.5	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	2.39939	3.447825	4.49626	0.0458078	0.00917582	0.149888	0.0855292
chrX	48916784	48916883	7815678	0	-	0.545455	(0.515,0.57]	chrX	796810	10	INTRON	INTRON	PIM2	ENSG00000102096.9	ENST00000376509.4	protein_coding	protein_coding	protein_coding	protein_coding	11	260	2	3.38803	3.44776	3.50749	1.14061e-6	3.81081e-7	6.14827e-4	3.44559e-4
chr4	165329602	165329700	2079649	0	+	0.418367	(0.408,0.44]	chr4	205560	11	INTRON	INTRON	MSMO1	ENSG00000052802.13	ENST00000507013.5:ENST00000261507.11:ENST00000393766.6:ENST00000504317.1:ENST00000505270.1	protein_coding	protein_coding	protein_coding	protein_coding	6	135	2	2.73509	3.4477599999999997	4.16043	1.36315e-4	5.66588e-5	0.010058	0.00655354
chr12	113225043	113225143	5231560	0	+	0.44	(0.408,0.44]	chr12	496099	4	SS3_PROX	SS3_PROX:INTRON	TPCN1	ENSG00000186815.13	ENST00000552642.5:ENST00000547275.5:ENST00000552985.5:ENST00000550873.5:ENST00000551096.5:ENST00000551099.5:ENST00000552897.5:ENST00000550785.5:ENST00000335509.11:ENST00000549279.1:ENST00000552077.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	30	2	2.2957	3.447745	4.59979	0.0516458	0.0109537	0.176696	0.0873034
chr15	22813714	22813814	5976352	0	+	0.44	(0.408,0.44]	chr15	568370	1	SS5_ADJ	SS5_ADJ:SS3_PROX:SS5_PROX:INTRON	NIPA1	ENSG00000170113.16	ENST00000437912.6:ENST00000561183.5:ENST00000560069.5:ENST00000337435.9:ENST00000559448.5:ENST00000557930.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	30	2	2.2957	3.447745	4.59979	0.0516458	0.0109537	0.176696	0.0873034
chr22	35775349	35775448	7581455	0	-	0.424242	(0.408,0.44]	chr22	775859	20	INTRON	INTRON	RBFOX2	ENSG00000100320.24	ENST00000438146.7:ENST00000695854.1:ENST00000405409.6:ENST00000695803.1:ENST00000449924.6:ENST00000414461.6:ENST00000262829.11:ENST00000397303.6:ENST00000695804.1:ENST00000359369.8:ENST00000695805.1:ENST00000695806.1:ENST00000416721.6:ENST00000495377.6:ENST00000695807.1:ENST00000473487.6:ENST00000408983.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	30	2	2.2957	3.447745	4.59979	0.0516458	0.0109537	0.176696	0.0873034
chr7	102553578	102553677	3588685	0	-	0.434343	(0.408,0.44]	chr7	335032	78	INTRON	INTRON	POLR2J3	ENSG00000168255.20	ENST00000489144.5:ENST00000464525.5:ENST00000379340.9:ENST00000486319.5:ENST00000503564.5:ENST00000511773.5:ENST00000513506.6:ENST00000508848.5:ENST00000504677.5:ENST00000506060.5:ENST00000502415.5:ENST00000507355.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	30	2	2.2957	3.447745	4.59979	0.0516458	0.0109537	0.176696	0.0873034
chr9	97007370	97007470	4298927	0	-	0.43	(0.408,0.44]	chr9	395262	341	INTRON	INTRON	MFSD14C	ENSG00000196312.15	ENST00000647176.1:ENST00000645073.1:ENST00000637864.1:ENST00000652726.1:ENST00000637811.1:ENST00000650909.1	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript:transcribed_unprocessed_pseudogene	1	30	2	2.2957	3.447745	4.59979	0.0516458	0.0109537	0.176696	0.0873034
chr1	112932529	112932629	523907	0	-	0.58	(0.57,1]	chr1	61690	21	INTRON	INTRON	SLC16A1	ENSG00000155380.13	ENST00000679803.1:ENST00000369626.8:ENST00000443580.6:ENST00000538576.5:ENST00000429288.2:ENST00000458229.6:ENST00000679846.1:ENST00000478835.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	20	2	2.52405	3.447705	4.37136	0.0263139	0.00345135	0.133676	0.0517761
chr13	28201443	28201543	5461462	0	+	0.58	(0.57,1]	chr13	523261	37	INTRON	INTRON	PAN3	ENSG00000152520.14	ENST00000503791.5:ENST00000380958.8:ENST00000399613.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	20	2	2.52405	3.447705	4.37136	0.0263139	0.00345135	0.133676	0.0517761
chr21	42878891	42878991	7467906	0	-	0.6	(0.57,1]	chr21	760987	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	WDR4	ENSG00000160193.12	ENST00000330317.6:ENST00000476326.5:ENST00000398208.3:ENST00000492742.5:ENST00000479429.5:ENST00000463902.5:ENST00000470658.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	20	2	2.52405	3.447705	4.37136	0.0263139	0.00345135	0.133676	0.0517761
chr22	42905744	42905844	7597252	0	-	0.6	(0.57,1]	chr22	778169	118	INTRON	INTRON	PACSIN2	ENSG00000100266.19	ENST00000337959.8:ENST00000263246.8:ENST00000407585.5:ENST00000403744.7:ENST00000402229.5:ENST00000634914.1:ENST00000453643.5:ENST00000422336.5:ENST00000418133.5:ENST00000445706.5:ENST00000453079.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	20	2	2.52405	3.447705	4.37136	0.0263139	0.00345135	0.133676	0.0517761
chr5	171968364	171968463	2772357	0	-	0.575758	(0.57,1]	chr5	260953	103	INTRON	INTRON	FBXW11	ENSG00000072803.18	ENST00000296933.10:ENST00000517395.6:ENST00000265094.9:ENST00000393802.6:ENST00000523843.5:ENST00000519693.5:ENST00000520376.1:ENST00000518752.1:ENST00000522507.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	20	2	2.52405	3.447705	4.37136	0.0263139	0.00345135	0.133676	0.0517761
chr6	3005695	3005785	2787909	0	+	0.622222	(0.57,1]	chr6	263236	7	INTRON	INTRON	NQO2	ENSG00000124588.22	ENST00000426637.5:ENST00000380472.7:ENST00000380455.11:ENST00000397717.7:ENST00000338130.7:ENST00000380441.5:ENST00000380454.8:ENST00000380430.6:ENST00000606474.1	protein_coding	protein_coding	protein_coding	protein_coding	1	20	2	2.52405	3.447705	4.37136	0.0263139	0.00345135	0.133676	0.0517761
chr6	4029958	4030058	2789784	0	+	0.58	(0.57,1]	chr6	263481	81	INTRON	INTRON	PRPF4B	ENSG00000112739.17	ENST00000480058.5:ENST00000337659.11	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	20	2	2.52405	3.447705	4.37136	0.0263139	0.00345135	0.133676	0.0517761
chr21	33463365	33463463	7440810	0	-	0.316327	(0.28,0.32]	chr21	759350	25	INTRON	INTRON	TMEM50B	ENSG00000142188.17	ENST00000420455.5:ENST00000542230.7:ENST00000441128.5:ENST00000442441.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	62	2	2.38504	3.447425	4.50981	0.0275554	0.00475871	0.123904	0.0636201
chr14	103340020	103340114	5825562	0	+	0.468085	(0.44,0.476]	chr14	552760	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	EIF5	ENSG00000100664.11	ENST00000216554.8:ENST00000392715.6:ENST00000558506.1:ENST00000561380.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	69	2	3.14559	3.44742	3.74925	0.00384923	4.08974e-4	0.0562562	0.0185763
chr4	24569353	24569453	2118859	0	-	0.5	(0.476,0.515]	chr4	209244	60	INTRON	INTRON	DHX15	ENSG00000109606.13	ENST00000336812.5	protein_coding	protein_coding	protein_coding	protein_coding	3	48	2	1.86014	3.4474	5.03466	0.0277606	0.00252065	0.137011	0.0446195
chr1	29051212	29051311	60336	0	+	0.494949	(0.476,0.515]	chr1	7705	99	INTRON	INTRON	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000647918.1:ENST00000646800.1:ENST00000644342.1:ENST00000646189.1:ENST00000482464.6:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000646260.1:ENST00000373798.5:ENST00000644600.1:ENST00000649674.1:ENST00000643173.1:ENST00000343067.9:ENST00000644780.1:ENST00000650265.1:ENST00000648181.1:ENST00000643604.1:ENST00000648891.1:ENST00000373797.2:ENST00000349460.9:ENST00000645184.1:ENST00000645111.1:ENST00000643302.1:ENST00000645999.1:ENST00000642643.1:ENST00000636666.1:ENST00000644848.1:ENST00000644470.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	48	2	1.74317	3.4473000000000003	5.15143	0.0396373	0.00166579	0.161534	0.0369207
chr14	21215704	21215803	5834619	0	-	0.50505	(0.476,0.515]	chr14	554424	22	INTRON	INTRON	HNRNPC	ENSG00000092199.19	ENST00000336053.10:ENST00000553300.6:ENST00000554969.5:ENST00000556142.5:ENST00000554455.5:ENST00000430246.6:ENST00000553753.5:ENST00000555309.5:ENST00000555914.5:ENST00000557442.5:ENST00000556628.5:ENST00000556513.5:ENST00000555883.5:ENST00000557201.5:ENST00000556897.5:ENST00000420743.6:ENST00000557157.5:ENST00000554539.5:ENST00000554383.5:ENST00000554417.1:ENST00000555215.5:ENST00000555137.5:ENST00000554891.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	48	2	1.74317	3.4473000000000003	5.15143	0.0396373	0.00166579	0.161534	0.0369207
chr16	30988472	30988568	6340042	0	+	0.489583	(0.476,0.515]	chr16	608120	4	UTR3	UTR3:EXON_MRNA	HSD3B7	ENSG00000099377.14	ENST00000297679.10:ENST00000262520.10	protein_coding	protein_coding	protein_coding	protein_coding	3	48	2	1.74317	3.4473000000000003	5.15143	0.0396373	0.00166579	0.161534	0.0369207
chr3	150435201	150435300	1533698	0	+	0.484848	(0.476,0.515]	chr3	159811	117	INTRON	INTRON	TSC22D2	ENSG00000196428.13	ENST00000361875.8:ENST00000688009.1:ENST00000480589.1:ENST00000466814.1:ENST00000485421.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	48	2	1.74317	3.4473000000000003	5.15143	0.0396373	0.00166579	0.161534	0.0369207
chr10	26768451	26768551	4583568	0	-	0.53	(0.515,0.57]	chr10	422374	2	SS5_PROX	SS5_PROX:INTRON	ABI1	ENSG00000136754.18	ENST00000376138.7:ENST00000376166.5:ENST00000376160.5:ENST00000376139.6:ENST00000376142.6:ENST00000359188.8:ENST00000376170.8:ENST00000536334.5:ENST00000490841.6:ENST00000376137.8:ENST00000376140.4:ENST00000346832.10	protein_coding	protein_coding	protein_coding	protein_coding	6	142	2	3.41978	3.447295	3.47481	1.03805e-4	1.84921e-6	0.00915599	8.27781e-4
chr1	224305466	224305566	644666	0	-	0.3	(0.28,0.32]	chr1	76170	3	SS3_PROX	SS3_PROX:INTRON	NVL	ENSG00000143748.18	ENST00000391875.6:ENST00000469968.5:ENST00000482491.5:ENST00000281701.11:ENST00000469075.5:ENST00000340871.8:ENST00000467882.5:ENST00000492281.5:ENST00000488718.5:ENST00000436927.5:ENST00000470989.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	36	2	2.86113	3.44729	4.03345	0.0704058	0.0122675	0.184298	0.0969406
chr11	71446234	71446332	4975299	0	-	0.285714	(0.28,0.32]	chr11	469909	9	INTRON	INTRON	DHCR7	ENSG00000172893.18	ENST00000355527.8:ENST00000407721.6:ENST00000682708.1:ENST00000683287.1:ENST00000685320.1:ENST00000690257.1:ENST00000525346.6:ENST00000526780.6:ENST00000683714.1:ENST00000527316.6:ENST00000682880.1:ENST00000683874.1:ENST00000531364.5:ENST00000529990.6:ENST00000527452.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	36	2	2.86113	3.44729	4.03345	0.0704058	0.0122675	0.184298	0.0969406
chr7	152341694	152341794	3680348	0	-	0.3	(0.28,0.32]	chr7	341647	106	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000682301.1:ENST00000452749.2:ENST00000680867.1:ENST00000683800.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	36	2	2.86113	3.44729	4.03345	0.0704058	0.0122675	0.184298	0.0969406
chr9	75015567	75015667	4268554	0	-	0.52	(0.515,0.57]	chr9	392795	153	INTRON	INTRON	CARNMT1	ENSG00000156017.13	ENST00000376834.8:ENST00000451153.1	protein_coding	protein_coding	protein_coding	protein_coding	2	58	2	3.31388	3.44726	3.58064	0.00174704	6.54693e-4	0.0386026	0.0233335
chrX	73979054	73979154	7682449	0	+	0.52	(0.515,0.57]	chrX	786638	107	INTRON	INTRON	JPX	ENSG00000225470.8	ENST00000664637.1:ENST00000639185.1:ENST00000655090.1:ENST00000640437.1:ENST00000660546.1:ENST00000667886.1:ENST00000660840.1:ENST00000657179.1:ENST00000670506.1:ENST00000657910.1:ENST00000662120.1:ENST00000671207.1:ENST00000659254.1:ENST00000656624.1:ENST00000667573.1:ENST00000660856.1:ENST00000660836.1:ENST00000668590.1:ENST00000658649.1:ENST00000414209.6:ENST00000654137.1:ENST00000670994.1:ENST00000602772.5:ENST00000655879.1:ENST00000657372.1:ENST00000657096.1:ENST00000602985.6:ENST00000670685.1:ENST00000670503.1:ENST00000663027.1:ENST00000654995.1:ENST00000602895.6:ENST00000654374.1:ENST00000660087.1:ENST00000665032.1:ENST00000671336.1:ENST00000671476.1:ENST00000667057.1:ENST00000670192.1:ENST00000670464.1:ENST00000665345.1:ENST00000661546.1:ENST00000662543.1:ENST00000602938.6:ENST00000664295.1:ENST00000654005.1:ENST00000669149.1:ENST00000659852.1:ENST00000656509.1:ENST00000602294.6:ENST00000667294.1:ENST00000663470.1:ENST00000602920.6:ENST00000671021.1:ENST00000659849.1:ENST00000667937.1:ENST00000661130.1:ENST00000654196.1:ENST00000655994.1:ENST00000659373.1:ENST00000662239.1:ENST00000670805.1:ENST00000656263.1:ENST00000653069.1:ENST00000657638.1:ENST00000653808.1:ENST00000653929.1:ENST00000653885.1:ENST00000659023.1:ENST00000602546.5:ENST00000659622.1:ENST00000671518.1:ENST00000670408.1	lncRNA	lncRNA	lncRNA	lncRNA	2	58	2	3.31388	3.44726	3.58064	0.00174704	6.54693e-4	0.0386026	0.0233335
chr2	173905760	173905859	1268470	0	-	0.444444	(0.44,0.476]	chr2	134189	51	UTR3	UTR3:EXON_MRNA:INTRON	SP3	ENSG00000172845.18	ENST00000650743.1:ENST00000651846.1:ENST00000310015.12	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	44	2	2.19078	3.447165	4.70355	0.0226089	0.00383786	0.117489	0.0562562
chr1	101298	101398	352389	0	-	0.33	(0.32,0.35]	chr1	40774	87	INTRON	INTRON	ENSG00000238009	ENSG00000238009.6	ENST00000466430.5:ENST00000477740.5	lncRNA	lncRNA	lncRNA	lncRNA	3	58	2	1.55682	3.447135	5.33745	0.0724487	6.1485e-4	0.188101	0.0223951
chr22	38732592	38732692	7514591	0	+	0.62	(0.57,1]	chr22	767662	20	UTR3	UTR3:EXON_MRNA:INTRON	GTPBP1	ENSG00000100226.16	ENST00000216044.10:ENST00000458073.5:ENST00000484971.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	39	2	3.02967	3.447135	3.8646	0.00471306	8.0672e-5	0.0631419	0.00804467
chr1	89526367	89526461	157414	0	+	0.521277	(0.515,0.57]	chr1	17159	10	INTRON	INTRON	LRRC8B	ENSG00000197147.15	ENST00000330947.7:ENST00000439853.6:ENST00000449440.5:ENST00000640258.1:ENST00000639264.1	protein_coding	protein_coding	protein_coding	protein_coding	10	216	2	2.74931	3.4470799999999997	4.14485	4.27249e-5	4.96347e-8	0.00555805	9.23245e-5
chr3	47704930	47705028	1684298	0	-	0.285714	(0.28,0.32]	chr3	172064	32	INTRON	INTRON	SMARCC1	ENSG00000173473.11	ENST00000254480.10:ENST00000425518.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	46	2	1.96475	3.44702	4.92929	0.0428385	0.0098607	0.162255	0.0838128
chr5	104110202	104110302	2441517	0	+	0.32	(0.28,0.32]	chr5	234410	49	INTRON	INTRON	LINC02163	ENSG00000251026.2	ENST00000662211.1:ENST00000666145.1	lncRNA	lncRNA	lncRNA	lncRNA	2	46	2	1.96475	3.44702	4.92929	0.0428385	0.0098607	0.162255	0.0838128
chr6	42630751	42630851	2865738	0	+	0.32	(0.28,0.32]	chr6	271081	105	INTRON	INTRON	UBR2	ENSG00000024048.11	ENST00000372899.6:ENST00000372901.2	protein_coding	protein_coding	protein_coding	protein_coding	2	46	2	1.96475	3.44702	4.92929	0.0428385	0.0098607	0.162255	0.0838128
chr19	3199588	3199683	6998984	0	+	0.663158	(0.57,1]	chr19	694106	3	INTRON	INTRON	NCLN	ENSG00000125912.11	ENST00000590671.5:ENST00000246117.9:ENST00000588428.5:ENST00000587740.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	27	2	1.91937	3.4469749999999997	4.97458	0.0468438	2.67728e-4	0.167716	0.0149989
chr7	5413078	5413178	3471976	0	-	0.63	(0.57,1]	chr7	324678	58	INTRON	INTRON	TNRC18	ENSG00000182095.15	ENST00000399537.8:ENST00000430969.6:ENST00000399434.2	protein_coding	protein_coding	protein_coding	protein_coding	2	27	2	1.91937	3.4469749999999997	4.97458	0.0468438	2.67728e-4	0.167716	0.0149989
chr7	10702814	10702914	3483808	0	-	0.4	(0.378,0.408]	chr7	325772	1409	INTRON	INTRON	MGC4859	ENSG00000283117.1	ENST00000634803.1	lncRNA	lncRNA	lncRNA	lncRNA	6	68	2	1.38218	3.44696	5.51174	0.0444424	5.93655e-4	0.162728	0.0225024
chr1	21770169	21770269	396740	0	-	0.3	(0.28,0.32]	chr1	47345	120	INTRON	INTRON	USP48	ENSG00000090686.16	ENST00000400301.5:ENST00000308271.14:ENST00000529637.5:ENST00000421625.6:ENST00000527823.5:ENST00000532737.1:ENST00000489108.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	48	2	2.38391	3.44686	4.50981	0.0275554	0.0122525	0.123904	0.0969406
chr10	96890736	96890836	4503552	0	+	0.38	(0.378,0.408]	chr10	414550	42	INTRON	INTRON	LCOR	ENSG00000196233.14	ENST00000676067.1:ENST00000676257.1:ENST00000676187.1:ENST00000675151.1:ENST00000675687.1:ENST00000675251.1:ENST00000676123.1:ENST00000371103.8:ENST00000675471.1:ENST00000421806.4:ENST00000675902.1:ENST00000540664.6:ENST00000676414.1:ENST00000675537.1:ENST00000675117.1:ENST00000675125.1:ENST00000356016.7:ENST00000371097.8:ENST00000676381.1:ENST00000674796.1:ENST00000674725.1:ENST00000675971.1:ENST00000676373.1:ENST00000676314.1:ENST00000675915.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	31	2	2.78705	3.44683	4.10661	0.0399023	0.0135539	0.143072	0.101363
chr11	3778372	3778472	4894979	0	-	0.38	(0.378,0.408]	chr11	458915	1	SS5_PROX	SS5_PROX:INTRON	NUP98	ENSG00000110713.17	ENST00000359171.8:ENST00000324932.12:ENST00000650171.1:ENST00000355260.7:ENST00000397004.8:ENST00000397007.8:ENST00000532475.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	31	2	2.78705	3.44683	4.10661	0.0399023	0.0135539	0.143072	0.101363
chr12	31081820	31081920	5106296	0	+	0.4	(0.378,0.408]	chr12	482173	29	INTRON	INTRON	DDX11	ENSG00000013573.17	ENST00000542838.6:ENST00000228264.10:ENST00000542129.5:ENST00000438391.6:ENST00000435753.6:ENST00000540935.5:ENST00000539049.5:ENST00000536265.5:ENST00000415475.6:ENST00000545668.5:ENST00000350437.8:ENST00000535158.5:ENST00000543756.5:ENST00000542244.5:ENST00000535317.5:ENST00000544652.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	31	2	2.78705	3.44683	4.10661	0.0399023	0.0135539	0.143072	0.101363
chr22	38493011	38493110	7587949	0	-	0.393939	(0.378,0.408]	chr22	776727	5	INTRON	INTRON	DDX17	ENSG00000100201.23	ENST00000403230.3:ENST00000396821.8:ENST00000216019.11:ENST00000475004.6:ENST00000432525.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	31	2	2.78705	3.44683	4.10661	0.0399023	0.0135539	0.143072	0.101363
chr4	105460343	105460443	2216556	0	-	0.4	(0.378,0.408]	chr4	217286	32	INTRON	INTRON	PPA2	ENSG00000138777.20	ENST00000341695.10:ENST00000348706.9:ENST00000509031.5:ENST00000351450.10:ENST00000354147.7:ENST00000432483.6:ENST00000510015.5:ENST00000509426.5:ENST00000508518.5:ENST00000514209.5:ENST00000506815.5:ENST00000457404.6:ENST00000502833.5:ENST00000504028.5:ENST00000502596.5:ENST00000513649.1:ENST00000499847.6:ENST00000502610.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	31	2	2.78705	3.44683	4.10661	0.0399023	0.0135539	0.143072	0.101363
chr10	30349278	30349377	4587650	0	-	0.484848	(0.476,0.515]	chr10	422999	1	INTRON	INTRON	MTPAP	ENSG00000107951.15	ENST00000488290.5	protein_coding	processed_transcript	protein_coding	processed_transcript	18	475	2	3.41765	3.446785	3.47592	5.28334e-7	4.25704e-8	4.22831e-4	8.36187e-5
chr11	16743405	16743505	4747228	0	+	0.31	(0.28,0.32]	chr11	439390	42	INTRON	INTRON	C11orf58	ENSG00000110696.10	ENST00000527893.5:ENST00000524439.5:ENST00000228136.9:ENST00000525684.1:ENST00000528634.5:ENST00000525256.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	51	2	1.86684	3.4467499999999998	5.02666	0.0605813	0.0027935	0.171122	0.0488769
chr18	36948202	36948300	6894032	0	+	0.295918	(0.28,0.32]	chr18	683237	13	INTRON	INTRON	KIAA1328	ENSG00000150477.15	ENST00000592611.5:ENST00000280020.10:ENST00000590617.5:ENST00000587139.5:ENST00000591619.5:ENST00000591911.1:ENST00000590456.5:ENST00000586135.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	51	2	1.86684	3.4467499999999998	5.02666	0.0605813	0.0027935	0.171122	0.0488769
chr16	66828926	66829020	6503029	0	-	0.446809	(0.44,0.476]	chr16	629265	4	INTRON	INTRON	NAE1	ENSG00000159593.15	ENST00000359087.8:ENST00000290810.8:ENST00000379463.6:ENST00000394074.6:ENST00000567743.5:ENST00000563253.5:ENST00000563185.6:ENST00000561579.6:ENST00000564040.6:ENST00000569388.5:ENST00000566336.5:ENST00000565535.5:ENST00000569348.5:ENST00000562757.5:ENST00000563419.5:ENST00000569963.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	61	2	1.40212	3.446545	5.49097	0.0524678	4.8612e-4	0.178047	0.0203841
chr1	184873150	184873250	602034	0	-	0.26	[0,0.28]	chr1	71746	47	INTRON	INTRON	NIBAN1	ENSG00000135842.17	ENST00000367511.4	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	2.69187	3.446465	4.20106	0.0695895	0.0221271	0.184298	0.123903
chr1	224006793	224006893	321067	0	+	0.27	[0,0.28]	chr1	36984	1	SS3_PROX	SS3_PROX:INTRON	SEPTIN7P13	ENSG00000185495.10	ENST00000449219.2:ENST00000572124.2	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript	1	38	2	2.69187	3.446465	4.20106	0.0695895	0.0221271	0.184298	0.123903
chr10	31889405	31889505	4589926	0	-	0.26	[0,0.28]	chr10	423163	274	INTRON	INTRON	ARHGAP12	ENSG00000165322.18	ENST00000344936.7:ENST00000375245.8:ENST00000396144.8:ENST00000375250.9:ENST00000311380.8	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	2.69187	3.446465	4.20106	0.0695895	0.0221271	0.184298	0.123903
chr21	14759147	14759246	7430182	0	-	0.252525	[0,0.28]	chr21	757888	47	INTRON	INTRON	ENSG00000232884	ENSG00000232884.10	ENST00000673788.1:ENST00000674136.1	lncRNA	lncRNA	lncRNA	lncRNA	1	38	2	2.69187	3.446465	4.20106	0.0695895	0.0221271	0.184298	0.123903
chr4	94462575	94462675	1998489	0	+	0.22	[0,0.28]	chr4	199549	55	INTRON	INTRON	PDLIM5	ENSG00000163110.15	ENST00000437932.5:ENST00000615540.4:ENST00000318007.9:ENST00000380180.7:ENST00000514830.5:ENST00000509333.5:ENST00000503974.5:ENST00000317968.9:ENST00000627587.2:ENST00000542407.5:ENST00000514743.5:ENST00000508216.5:ENST00000511767.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	38	2	2.69187	3.446465	4.20106	0.0695895	0.0221271	0.184298	0.123903
chr5	119116934	119117033	2460229	0	+	0.242424	[0,0.28]	chr5	235625	2	INTRON	INTRON	DMXL1	ENSG00000172869.15	ENST00000539542.6:ENST00000503802.5:ENST00000311085.8:ENST00000514151.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	38	2	2.69187	3.446465	4.20106	0.0695895	0.0221271	0.184298	0.123903
chr8	37862496	37862595	3935567	0	-	0.353535	(0.35,0.378]	chr8	360548	40	UTR3	UTR3:EXON_MRNA	RAB11FIP1	ENSG00000156675.16	ENST00000330843.9:ENST00000287263.8	protein_coding	protein_coding	protein_coding	protein_coding	13	384	2	3.13549	3.4464550000000003	3.75742	1.05006e-5	6.50537e-8	0.00253642	1.10383e-4
chr22	23230027	23230127	7483702	0	+	0.42	(0.408,0.44]	chr22	763541	303	INTRON	INTRON	BCR	ENSG00000186716.21	ENST00000479188.5:ENST00000359540.7:ENST00000305877.13:ENST00000463770.5:ENST00000487679.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	108	2	2.7951	3.4461250000000003	4.09715	8.18693e-4	4.3007e-5	0.0264086	0.00530629
chr22	37870699	37870773	7511910	0	+	0.364865	(0.35,0.378]	chr22	767196	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	EIF3L	ENSG00000100129.18	ENST00000412331.6:ENST00000624234.3:ENST00000381683.10:ENST00000476955.5:ENST00000652021.1:ENST00000477256.5:ENST00000406934.5:ENST00000464790.1:ENST00000482600.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	177	2	2.76921	3.44612	4.12303	4.59253e-4	1.46022e-6	0.01978	7.23568e-4
chr11	64066268	64066368	4963632	0	-	0.42	(0.408,0.44]	chr11	467267	506	INTRON	INTRON	MACROD1	ENSG00000133315.12	ENST00000255681.7:ENST00000675777.1:ENST00000543422.5:ENST00000545464.5:ENST00000542359.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	32	2	2.18807	3.446085	4.7041	0.0708044	0.00381677	0.184528	0.0562562
chr1	226063148	226063248	327769	0	+	0.64	(0.57,1]	chr1	37738	2	SS5_PROX	SS5_PROX:INTRON	H3-3A	ENSG00000163041.13	ENST00000366816.5:ENST00000366814.3:ENST00000366815.10:ENST00000653960.1:ENST00000655399.1:ENST00000667897.1:ENST00000656829.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	115	2	3.35569	3.4460699999999997	3.53645	1.14916e-5	1.134e-7	0.00268333	1.49694e-4
chr1	96736760	96736860	168091	0	+	0.52	(0.515,0.57]	chr1	18215	128	INTRON	INTRON	PTBP2	ENSG00000117569.19	ENST00000482253.5:ENST00000675735.1:ENST00000609116.5:ENST00000674951.1:ENST00000675080.1:ENST00000426398.3:ENST00000460706.5:ENST00000370197.5:ENST00000370198.5:ENST00000476419.5:ENST00000676292.1:ENST00000676096.1:ENST00000675365.1:ENST00000674579.1:ENST00000675401.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	59	2	3.19178	3.44604	3.7003	0.00289534	3.73715e-4	0.0494641	0.0179087
chr10	1000176	1000276	4379115	0	+	0.3	(0.28,0.32]	chr10	403840	1	SS3_PROX	SS3_PROX:INTRON	GTPBP4	ENSG00000107937.19	ENST00000360803.9:ENST00000491635.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	46	2	2.0243	3.445805	4.86731	0.0364967	0.0116253	0.153759	0.0889104
chr10	35383133	35383233	4424969	0	+	0.43	(0.408,0.44]	chr10	407899	456	INTRON	INTRON	CCNY	ENSG00000108100.18	ENST00000374706.5:ENST00000490012.6:ENST00000493157.6:ENST00000374704.8:ENST00000265375.13:ENST00000339497.7:ENST00000492478.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	32	2	2.36073	3.445805	4.53088	0.0481658	0.00669275	0.153019	0.0738715
chr2	121356093	121356193	1219398	0	-	0.42	(0.408,0.44]	chr2	129802	70	INTRON	INTRON	CLASP1	ENSG00000074054.20	ENST00000263710.8:ENST00000397587.7:ENST00000541377.5:ENST00000409078.8:ENST00000455322.6:ENST00000452274.6	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	2.36073	3.445805	4.53088	0.0481658	0.00669275	0.153019	0.0738715
chr4	55626721	55626820	2150602	0	-	0.282828	(0.28,0.32]	chr4	211635	100	INTRON	INTRON	NMU	ENSG00000109255.11	ENST00000511469.5:ENST00000264218.7:ENST00000505262.5:ENST00000507338.1:ENST00000515325.5:ENST00000509371.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	46	2	2.0243	3.445805	4.86731	0.0364967	0.0116253	0.153759	0.0889104
chr4	73223913	73224012	2160478	0	-	0.434343	(0.408,0.44]	chr4	212799	9	INTRON	INTRON	ANKRD17	ENSG00000132466.20	ENST00000358602.9:ENST00000558247.5:ENST00000330838.10:ENST00000561029.1	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	2.36073	3.445805	4.53088	0.0481658	0.00669275	0.153019	0.0738715
chr6	15490238	15490338	2825394	0	+	0.29	(0.28,0.32]	chr6	265224	23	INTRON	INTRON	JARID2	ENSG00000008083.14	ENST00000341776.7:ENST00000397311.4	protein_coding	protein_coding	protein_coding	protein_coding	2	46	2	2.0243	3.445805	4.86731	0.0364967	0.0116253	0.153759	0.0889104
chr6	68804190	68804290	2888008	0	+	0.42	(0.408,0.44]	chr6	273730	1644	INTRON	INTRON	ADGRB3	ENSG00000135298.15	ENST00000370598.6:ENST00000684661.1:ENST00000546190.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	32	2	2.36073	3.445805	4.53088	0.0481658	0.00669275	0.153019	0.0738715
chr7	103471876	103471969	3594342	0	-	0.408602	(0.408,0.44]	chr7	335549	2	UTR3	UTR3:EXON_MRNA	RELN	ENSG00000189056.15	ENST00000679371.1:ENST00000681364.1:ENST00000680248.1:ENST00000343529.9:ENST00000428762.6:ENST00000429186.2:ENST00000681034.1:ENST00000424685.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	32	2	2.36073	3.445805	4.53088	0.0481658	0.00669275	0.153019	0.0738715
chr22	47872359	47872459	7541792	0	+	0.31	(0.28,0.32]	chr22	770801	78	INTRON	INTRON	ENSG00000224271	ENSG00000224271.7	ENST00000664761.1:ENST00000650683.1:ENST00000651536.1:ENST00000651445.1:ENST00000650660.1:ENST00000651403.1:ENST00000652228.1:ENST00000651124.1:ENST00000651003.1:ENST00000651939.1:ENST00000652080.1:ENST00000651033.1:ENST00000651584.1	lncRNA	lncRNA	lncRNA	lncRNA	2	46	2	1.90263	3.445675	4.98872	0.0503272	0.00838468	0.17488	0.0774402
chr1	10161686	10161786	20440	0	+	0.44	(0.408,0.44]	chr1	1971	4	SS5_PROX	SS5_PROX:INTRON	UBE4B	ENSG00000130939.20	ENST00000672724.1:ENST00000253251.12:ENST00000343090.11:ENST00000488228.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	40	2	2.21238	3.44566	4.67894	0.0193525	0.0087648	0.119831	0.0788605
chr12	121325165	121325264	5436900	0	-	0.494949	(0.476,0.515]	chr12	519869	42	INTRON	INTRON	ANAPC5	ENSG00000089053.13	ENST00000261819.8:ENST00000535641.5:ENST00000541887.5:ENST00000534976.5:ENST00000441917.6:ENST00000539079.5:ENST00000544314.5:ENST00000535482.1:ENST00000545218.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	40	2	2.19809	3.445645	4.6932	0.020317	0.00753088	0.121522	0.074841
chr20	35081262	35081361	7332791	0	-	0.484848	(0.476,0.515]	chr20	746973	27	INTRON	INTRON	TRPC4AP	ENSG00000100991.12	ENST00000252015.3:ENST00000451813.6	protein_coding	protein_coding	protein_coding	protein_coding	2	40	2	2.19809	3.445645	4.6932	0.020317	0.00753088	0.121522	0.074841
chr16	8053223	8053323	6441041	0	-	0.36	(0.35,0.378]	chr16	620351	456	INTRON	INTRON	ENSG00000260289	ENSG00000260289.2	ENST00000670665.1:ENST00000654046.1:ENST00000567103.2	lncRNA	lncRNA	lncRNA	lncRNA	2	47	2	2.14264	3.44562	4.7486	0.0274795	0.00418965	0.123904	0.0591344
chr1	40378297	40378396	81489	0	+	0.373737	(0.35,0.378]	chr1	10553	32	INTRON	INTRON	SMAP2	ENSG00000084070.12	ENST00000435168.6:ENST00000372718.8:ENST00000372708.5	protein_coding	protein_coding	protein_coding	protein_coding	4	58	2	1.7339	3.445565	5.15723	0.0260366	0.00272706	0.133676	0.0467523
chr12	102153468	102153568	5205197	0	+	0.53	(0.515,0.57]	chr12	492830	2	SS3_PROX	SS3_PROX:INTRON	PARPBP	ENSG00000185480.12	ENST00000327680.7:ENST00000541394.5:ENST00000543784.5:ENST00000392911.6:ENST00000541668.5:ENST00000457614.6:ENST00000417507.6:ENST00000412715.3:ENST00000535811.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	92	2	2.65363	3.445525	4.23742	0.00105762	2.14737e-5	0.0299618	0.00377331
chr16	70384816	70384915	6510916	0	-	0.535354	(0.515,0.57]	chr16	630663	12	INTRON	INTRON	ST3GAL2	ENSG00000157350.13	ENST00000342907.3:ENST00000393640.8:ENST00000567822.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	92	2	2.65363	3.445525	4.23742	0.00105762	2.14737e-5	0.0299618	0.00377331
chr5	146165462	146165561	2747238	0	-	0.40404	(0.378,0.408]	chr5	258874	6	INTRON	INTRON	LARS1	ENSG00000133706.19	ENST00000674174.1:ENST00000674170.1:ENST00000674479.1:ENST00000674309.1:ENST00000674218.1:ENST00000674467.1:ENST00000674290.1:ENST00000674447.1:ENST00000674270.1:ENST00000674383.1:ENST00000674191.1:ENST00000674158.1:ENST00000394434.7:ENST00000674398.1:ENST00000674277.1:ENST00000274562.13:ENST00000510191.5:ENST00000674310.1:ENST00000512412.2:ENST00000674417.1:ENST00000674450.1:ENST00000674412.1:ENST00000618084.2:ENST00000511505.5:ENST00000505223.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	54	2	1.77782	3.445485	5.11315	0.0388177	9.26795e-4	0.143072	0.0278442
chr22	20524666	20524766	7479521	0	+	0.63	(0.57,1]	chr22	762963	3	SS5_PROX	SS5_PROX:INTRON	MED15	ENSG00000099917.17	ENST00000445987.5:ENST00000444094.5:ENST00000414658.5:ENST00000486656.5:ENST00000433831.5:ENST00000432052.5:ENST00000292733.11:ENST00000263205.11:ENST00000477824.5:ENST00000406969.5:ENST00000382974.6:ENST00000441501.5:ENST00000438962.1:ENST00000445189.5:ENST00000451058.5:ENST00000473028.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	32	2	1.92756	3.4454599999999997	4.96336	0.0220439	2.05554e-4	0.115395	0.0124557
chr10	21699414	21699514	4406084	0	+	0.32	(0.28,0.32]	chr10	406537	24	INTRON	INTRON	MLLT10	ENSG00000078403.17	ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000651298.1:ENST00000377059.7:ENST00000651382.1:ENST00000438473.6:ENST00000420525.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	34	2	2.38101	3.44541	4.50981	0.0456017	0.0275554	0.164236	0.123904
chr10	92901372	92901467	4492148	0	+	0.294737	(0.28,0.32]	chr10	413723	19	UTR3	UTR3:EXON_MRNA:INTRON	EXOC6	ENSG00000138190.17	ENST00000671701.1:ENST00000672817.1:ENST00000371552.8:ENST00000443748.6:ENST00000371543.5:ENST00000260762.10	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	2.38101	3.44541	4.50981	0.0456017	0.0275554	0.164236	0.123904
chr13	28142985	28143085	5460873	0	+	0.32	(0.28,0.32]	chr13	523235	35	INTRON	INTRON	PAN3	ENSG00000152520.14	ENST00000503791.5:ENST00000380958.8:ENST00000399613.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	34	2	2.38101	3.44541	4.50981	0.0456017	0.0275554	0.164236	0.123904
chr17	3812245	3812345	6707853	0	-	0.31	(0.28,0.32]	chr17	656962	102	UTR3	UTR3:EXON_MRNA	NCBP3	ENSG00000074356.17	ENST00000389005.6:ENST00000574911.5:ENST00000575815.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	34	2	2.38101	3.44541	4.50981	0.0456017	0.0275554	0.164236	0.123904
chr17	28091835	28091935	6583013	0	+	0.3	(0.28,0.32]	chr17	639837	299	INTRON	INTRON	NLK	ENSG00000087095.13	ENST00000407008.8:ENST00000496808.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	34	2	2.38101	3.44541	4.50981	0.0456017	0.0275554	0.164236	0.123904
chr4	146176769	146176853	2064199	0	+	0.285714	(0.28,0.32]	chr4	204277	2	SS5_PROX	SS5_PROX:INTRON	LSM6	ENSG00000164167.12	ENST00000515311.5:ENST00000296581.11:ENST00000503982.1:ENST00000649747.1:ENST00000502781.5:ENST00000504181.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	34	2	2.38101	3.44541	4.50981	0.0456017	0.0275554	0.164236	0.123904
chr7	105282445	105282545	3602837	0	-	0.31	(0.28,0.32]	chr7	336144	132	INTRON	INTRON	SRPK2	ENSG00000135250.17	ENST00000393651.8:ENST00000489828.5:ENST00000482897.5:ENST00000460391.5:ENST00000462282.5:ENST00000465112.5:ENST00000482862.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	34	2	2.38101	3.44541	4.50981	0.0456017	0.0275554	0.164236	0.123904
chr8	90349141	90349241	3793585	0	+	0.29	(0.28,0.32]	chr8	351786	1020	INTRON	INTRON	LINC00534	ENSG00000253394.7	ENST00000662145.1:ENST00000655523.1:ENST00000517400.6:ENST00000658299.1:ENST00000663329.1:ENST00000658342.1:ENST00000523283.6:ENST00000655219.1:ENST00000662692.1:ENST00000667296.1:ENST00000667565.1:ENST00000523406.2:ENST00000659030.1:ENST00000653734.1:ENST00000654785.1:ENST00000524361.5:ENST00000668745.1:ENST00000666641.2:ENST00000661519.1:ENST00000671657.1:ENST00000655123.1:ENST00000663098.1:ENST00000670903.1:ENST00000654946.1	lncRNA	lncRNA	lncRNA	lncRNA	1	34	2	2.38101	3.44541	4.50981	0.0456017	0.0275554	0.164236	0.123904
chr9	112628690	112628790	4187210	0	+	0.31	(0.28,0.32]	chr9	381827	96	INTRON	INTRON	KIAA1958	ENSG00000165185.15	ENST00000337530.11:ENST00000536272.5	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	2.38101	3.44541	4.50981	0.0456017	0.0275554	0.164236	0.123904
chrX	98748865	98748965	7692456	0	+	0.31	(0.28,0.32]	chrX	787209	169	INTRON	INTRON	ENSG00000281566	ENSG00000281566.3	ENST00000649508.1:ENST00000626665.3:ENST00000627700.2	lncRNA	lncRNA	lncRNA	lncRNA	1	34	2	2.38101	3.44541	4.50981	0.0456017	0.0275554	0.164236	0.123904
chr16	90189464	90189563	6424786	0	+	0.333333	(0.32,0.35]	chr16	617262	18	INTRON	INTRON	LINC02193	ENSG00000260923.7	ENST00000568418.1:ENST00000656587.1:ENST00000668099.1:ENST00000569162.2:ENST00000665776.1:ENST00000669853.1:ENST00000668039.1:ENST00000658135.1:ENST00000663101.1:ENST00000663757.1:ENST00000568947.2	lncRNA	lncRNA	lncRNA	lncRNA	2	78	2	3.28107	3.4453750000000003	3.60968	0.00262488	0.00105196	0.0470772	0.029592
chr6	43556264	43556364	3097129	0	-	0.49	(0.476,0.515]	chr6	290063	3	SS3_PROX	SS3_PROX:INTRON	XPO5	ENSG00000124571.18	ENST00000265351.12:ENST00000496341.6:ENST00000424378.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	40	2	1.91817	3.44535	4.97253	0.0459211	0.00311573	0.164984	0.0498063
chr1	8755536	8755636	373163	0	-	0.43	(0.408,0.44]	chr1	43549	18	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000656437.1:ENST00000659924.1	protein_coding	protein_coding	protein_coding	protein_coding	2	40	2	1.93243	3.4453	4.95817	0.0441194	0.00372419	0.162255	0.0535094
chr15	89091068	89091166	6094591	0	+	0.428571	(0.408,0.44]	chr15	579963	3	INTRON	INTRON	ABHD2	ENSG00000140526.18	ENST00000569411.5:ENST00000569550.5:ENST00000564876.5:ENST00000565066.5:ENST00000565973.5:ENST00000352732.10:ENST00000565825.5:ENST00000562254.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	40	2	1.93243	3.4453	4.95817	0.0441194	0.00372419	0.162255	0.0535094
chr16	74385949	74386049	6389336	0	+	0.44	(0.408,0.44]	chr16	614452	2	SS5_PROX	SS5_PROX:INTRON	NPIPB15	ENSG00000196436.9	ENST00000692376.1:ENST00000429990.1	protein_coding	protein_coding	protein_coding	protein_coding	2	40	2	1.93243	3.4453	4.95817	0.0441194	0.00372419	0.162255	0.0535094
chr5	65578149	65578246	2368784	0	+	0.42268	(0.408,0.44]	chr5	228256	7	INTRON	INTRON	PPWD1	ENSG00000113593.12	ENST00000535264.5:ENST00000538977.5:ENST00000261308.10:ENST00000510930.5:ENST00000511908.5:ENST00000514172.1:ENST00000511334.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	40	2	1.93243	3.4453	4.95817	0.0441194	0.00372419	0.162255	0.0535094
chr7	156725763	156725837	3686319	0	-	0.432432	(0.408,0.44]	chr7	341996	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	LMBR1	ENSG00000105983.23	ENST00000353442.10:ENST00000448926.5:ENST00000415428.5:ENST00000454132.5:ENST00000434503.5:ENST00000461603.5:ENST00000486837.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	40	2	1.93243	3.4453	4.95817	0.0441194	0.00372419	0.162255	0.0535094
chr6	38802182	38802281	2861287	0	+	0.454545	(0.44,0.476]	chr6	270403	102	INTRON	INTRON	DNAH8	ENSG00000124721.18	ENST00000327475.11:ENST00000449981.6:ENST00000359357.7	protein_coding	protein_coding	protein_coding	protein_coding	3	49	2	2.12992	3.4452999999999996	4.76068	0.010975	0.00653414	0.092635	0.0699952
chr15	63516397	63516497	6042019	0	+	0.35	(0.32,0.35]	chr15	575355	5	INTRON	INTRON	USP3	ENSG00000140455.17	ENST00000540797.5:ENST00000380324.8:ENST00000561442.5:ENST00000560070.5:ENST00000557884.5:ENST00000558157.5:ENST00000561326.5:ENST00000559873.5:ENST00000559192.5:ENST00000559771.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	44	2	2.19668	3.44524	4.6938	0.021398	0.0137794	0.123719	0.0949306
chr5	135357626	135357725	2728494	0	-	0.323232	(0.32,0.35]	chr5	256807	47	EXON_LNCRNA	EXON_LNCRNA:INTRON	MACROH2A1	ENSG00000113648.17	ENST00000511689.6:ENST00000512507.5:ENST00000304332.8:ENST00000687629.1:ENST00000688649.1:ENST00000312469.8:ENST00000360597.8:ENST00000506671.5:ENST00000423969.6:ENST00000510038.1:ENST00000507868.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	44	2	2.19668	3.44524	4.6938	0.021398	0.0137794	0.123719	0.0949306
chr6	44438678	44438778	2873439	0	+	0.33	(0.32,0.35]	chr6	272707	84	INTRON	INTRON	CDC5L	ENSG00000096401.8	ENST00000371477.4	protein_coding	protein_coding	protein_coding	protein_coding	2	44	2	2.19668	3.44524	4.6938	0.021398	0.0137794	0.123719	0.0949306
chr10	21584895	21584994	4404923	0	+	0.373737	(0.35,0.378]	chr10	406453	125	INTRON	INTRON	MLLT10	ENSG00000078403.17	ENST00000651097.1:ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000650772.1:ENST00000651298.1:ENST00000495130.5:ENST00000377059.7:ENST00000476557.5:ENST00000462999.5:ENST00000430455.2:ENST00000479634.1:ENST00000480415.6:ENST00000652258.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	42	2	2.17079	3.44516	4.71953	0.0225978	0.0103314	0.124921	0.0850389
chr15	64647785	64647884	6045964	0	+	0.363636	(0.35,0.378]	chr15	575706	36	INTRON	INTRON	ZNF609	ENSG00000180357.10	ENST00000326648.5:ENST00000558680.5:ENST00000559364.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	42	2	2.17079	3.44516	4.71953	0.0225978	0.0103314	0.124921	0.0850389
chr19	23783184	23783277	7042635	0	+	0.44086	(0.44,0.476]	chr19	702217	3	INTRON	INTRON	RPSAP58	ENSG00000288920.1	ENST00000471224.5:ENST00000692590.1:ENST00000475499.2:ENST00000686829.1:ENST00000689525.1:ENST00000691397.1:ENST00000688405.1:ENST00000692739.1:ENST00000687994.1:ENST00000484897.4:ENST00000685013.1:ENST00000685490.1:ENST00000462186.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	52	2	1.7651	3.4451150000000004	5.12513	0.039388	7.96486e-4	0.143072	0.0258804
chr16	24785642	24785742	6329779	0	+	0.35	(0.32,0.35]	chr16	605958	68	INTRON	INTRON	TNRC6A	ENSG00000090905.19	ENST00000395799.8:ENST00000315183.11:ENST00000491718.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	53	2	1.93031	3.44501	4.95971	0.0231421	0.00663522	0.126939	0.0703181
chr19	16646053	16646151	7150643	0	-	0.326531	(0.32,0.35]	chr19	722443	5	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	SMIM7	ENSG00000214046.9	ENST00000465250.6:ENST00000481671.6:ENST00000594662.5:ENST00000597781.5:ENST00000598278.5:ENST00000593409.5:ENST00000487803.5:ENST00000627144.2:ENST00000487416.7:ENST00000593404.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	53	2	1.93031	3.44501	4.95971	0.0231421	0.00663522	0.126939	0.0703181
chr1	214611320	214611419	313615	0	+	0.373737	(0.35,0.378]	chr1	36068	73	INTRON	INTRON	CENPF	ENSG00000117724.14	ENST00000366955.8:ENST00000464322.5:ENST00000495259.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	42	2	1.90405	3.44483	4.98561	0.0482651	0.00474226	0.171852	0.0600445
chr1	1271737	1271837	359178	0	-	0.49	(0.476,0.515]	chr1	41486	1	SS3_PROX	SS3_PROX:INTRON	UBE2J2	ENSG00000160087.21	ENST00000450390.6:ENST00000349431.11:ENST00000347370.6:ENST00000400929.6:ENST00000464036.5:ENST00000360466.6:ENST00000400930.8:ENST00000473215.5:ENST00000435198.5:ENST00000509720.5:ENST00000491779.5:ENST00000466752.5:ENST00000503294.5:ENST00000477894.5:ENST00000422076.5:ENST00000502382.1:ENST00000461142.3:ENST00000488418.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	32	2	2.56033	3.4447400000000004	4.32915	0.0287634	0.0124637	0.127066	0.0973643
chr10	89755759	89755857	4485125	0	+	0.5	(0.476,0.515]	chr10	412833	7	INTRON	INTRON	KIF20B	ENSG00000138182.15	ENST00000371728.8:ENST00000260753.8:ENST00000478929.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	32	2	2.56033	3.4447400000000004	4.32915	0.0287634	0.0124637	0.127066	0.0973643
chr19	15415846	15415945	7148105	0	-	0.484848	(0.476,0.515]	chr19	722126	49	INTRON	INTRON	AKAP8L	ENSG00000011243.19	ENST00000594594.6:ENST00000679638.1:ENST00000595465.6:ENST00000599137.6:ENST00000397410.10:ENST00000609519.5:ENST00000593845.5:ENST00000680649.1:ENST00000596213.6:ENST00000681170.1:ENST00000680703.1:ENST00000680017.1:ENST00000595879.6:ENST00000680303.1:ENST00000679634.1:ENST00000681744.1:ENST00000680803.1:ENST00000681459.1:ENST00000680323.1:ENST00000680774.1:ENST00000680302.1:ENST00000680103.1:ENST00000680642.1:ENST00000681405.1:ENST00000680957.1:ENST00000680865.1:ENST00000680363.1:ENST00000595087.6:ENST00000600065.6:ENST00000594893.5:ENST00000595136.5:ENST00000599488.5:ENST00000596195.5:ENST00000600247.5:ENST00000595067.1:ENST00000601147.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	32	2	2.56033	3.4447400000000004	4.32915	0.0287634	0.0124637	0.127066	0.0973643
chr19	16460214	16460314	7149568	0	-	0.49	(0.476,0.515]	chr19	722342	176	INTRON	INTRON	EPS15L1	ENSG00000127527.14	ENST00000602022.5:ENST00000455140.7:ENST00000592031.5:ENST00000248070.10:ENST00000535753.6:ENST00000594975.5:ENST00000597937.5:ENST00000593760.5:ENST00000596037.5:ENST00000597559.5:ENST00000602151.1:ENST00000595845.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	32	2	2.56033	3.4447400000000004	4.32915	0.0287634	0.0124637	0.127066	0.0973643
chr7	120973643	120973743	3393596	0	+	0.37	(0.35,0.378]	chr7	317653	4	SS5_PROX	SS5_PROX:INTRON	ING3	ENSG00000071243.16	ENST00000315870.10:ENST00000427726.5:ENST00000431467.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	44	2	2.49643	3.4447300000000003	4.39303	0.0237246	0.00752974	0.118716	0.0773151
chr12	110293317	110293416	5226220	0	+	0.40404	(0.378,0.408]	chr12	495240	8	INTRON	INTRON	ATP2A2	ENSG00000174437.18	ENST00000552636.2:ENST00000308664.10:ENST00000539276.7:ENST00000377685.9:ENST00000548169.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	150	2	2.71418	3.4447099999999997	4.17524	0.00126468	8.45556e-7	0.0325134	5.20245e-4
chr2	32458424	32458523	731816	0	+	0.232323	[0,0.28]	chr2	84399	41	INTRON	INTRON	BIRC6	ENSG00000115760.15	ENST00000421745.7:ENST00000648282.1	protein_coding	protein_coding	protein_coding	protein_coding	1	37	2	2.5055	3.4446849999999998	4.38387	0.0501911	0.0359431	0.156383	0.152322
chr21	37093504	37093604	7405035	0	+	0.27	[0,0.28]	chr21	754565	1	SS3_PROX	SS3_PROX:INTRON	TTC3	ENSG00000182670.14	ENST00000492275.6:ENST00000418766.6:ENST00000485402.5:ENST00000450533.6:ENST00000438055.5:ENST00000696812.1:ENST00000696811.1:ENST00000463216.6:ENST00000481605.6:ENST00000540756.5:ENST00000494243.5:ENST00000399010.5:ENST00000411496.2:ENST00000399017.6:ENST00000354749.6:ENST00000479930.5:ENST00000460328.5:ENST00000491952.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	37	2	2.5055	3.4446849999999998	4.38387	0.0501911	0.0359431	0.156383	0.152322
chr5	78084647	78084747	2649016	0	-	0.21	[0,0.28]	chr5	251637	403	INTRON	INTRON	AP3B1	ENSG00000132842.15	ENST00000519295.6:ENST00000255194.11:ENST00000695515.1:ENST00000695454.1:ENST00000695511.1:ENST00000695453.1:ENST00000695455.1:ENST00000695513.1:ENST00000695488.1:ENST00000695450.1:ENST00000695507.1:ENST00000695506.1:ENST00000695512.1:ENST00000695510.1:ENST00000695451.1:ENST00000695447.1:ENST00000695458.1:ENST00000695505.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	37	2	2.5055	3.4446849999999998	4.38387	0.0501911	0.0359431	0.156383	0.152322
chr9	130637117	130637212	4213690	0	+	0.252632	[0,0.28]	chr9	386377	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	FUBP3	ENSG00000107164.16	ENST00000319725.10:ENST00000650723.1:ENST00000492199.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	37	2	2.5055	3.4446849999999998	4.38387	0.0501911	0.0359431	0.156383	0.152322
chr5	159199968	159200067	2759092	0	-	0.383838	(0.378,0.408]	chr5	260362	48	INTRON	INTRON	RNF145	ENSG00000145860.12	ENST00000424310.7:ENST00000519865.5:ENST00000274542.6:ENST00000611185.4:ENST00000521606.6:ENST00000518802.5:ENST00000520638.1:ENST00000520548.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	112	2	3.27735	3.444465	3.61158	8.34292e-4	4.08558e-5	0.0266389	0.00519615
chr1	78010966	78011065	148890	0	+	0.313131	(0.28,0.32]	chr1	16588	53	INTRON	INTRON	DNAJB4	ENSG00000162616.9	ENST00000487931.1:ENST00000477671.2:ENST00000484662.1:ENST00000426517.1:ENST00000476396.1:ENST00000370763.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	38	2	2.45545	3.444425	4.4334	0.0438092	0.0163355	0.14901	0.109464
chr11	47831272	47831372	4951994	0	-	0.29	(0.28,0.32]	chr11	464617	37	INTRON	INTRON	NUP160	ENSG00000030066.14	ENST00000694866.1:ENST00000378460.7:ENST00000530326.5:ENST00000528071.5:ENST00000528501.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	38	2	2.45545	3.444425	4.4334	0.0438092	0.0163355	0.14901	0.109464
chr1	150383413	150383513	221889	0	+	0.5	(0.476,0.515]	chr1	25051	181	INTRON	INTRON	RPRD2	ENSG00000163125.16	ENST00000492220.1:ENST00000369068.5:ENST00000401000.8:ENST00000369067.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	55	2	1.73688	3.4441550000000003	5.15143	0.0252731	0.00166579	0.133676	0.0369207
chr19	46378552	46378651	7081635	0	+	0.323232	(0.32,0.35]	chr19	708540	16	INTRON	INTRON	PPP5C	ENSG00000011485.15	ENST00000012443.9:ENST00000478046.5:ENST00000391919.1:ENST00000527193.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	48	2	1.88909	3.4441550000000003	4.99922	0.0553737	0.00223907	0.165463	0.0435144
chr1	38803500	38803600	427139	0	-	0.43	(0.408,0.44]	chr1	51806	2	SS5_PROX	SS5_PROX:INTRON	ENSG00000284632	ENSG00000284632.1	ENST00000641481.1:ENST00000641963.1	lncRNA	lncRNA	lncRNA	lncRNA	3	48	2	1.93002	3.444095	4.95817	0.022095	0.00372419	0.123903	0.0535094
chr12	50505839	50505939	5137158	0	+	0.42	(0.408,0.44]	chr12	484468	2	INTRON	INTRON	DIP2B	ENSG00000066084.13	ENST00000301180.10:ENST00000549620.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	89	2	2.9826	3.4440350000000004	3.90547	9.23082e-4	2.03612e-4	0.0278392	0.0129859
chr16	7985185	7985284	6440360	0	-	0.464646	(0.44,0.476]	chr16	620345	69	INTRON	INTRON	ENSG00000260289	ENSG00000260289.2	ENST00000670665.1:ENST00000654046.1:ENST00000567103.2	lncRNA	lncRNA	lncRNA	lncRNA	3	88	2	3.01782	3.444025	3.87023	7.8136e-4	2.32199e-4	0.0257169	0.0139633
chr2	54988098	54988198	1120780	0	-	0.5	(0.476,0.515]	chr2	120141	4	SS3_PROX	SS3_PROX:INTRON	RTN4	ENSG00000115310.19	ENST00000394609.6:ENST00000404909.5:ENST00000394611.6:ENST00000317610.11:ENST00000357732.8:ENST00000337526.11:ENST00000357376.7:ENST00000405240.5:ENST00000438462.1	protein_coding	protein_coding	protein_coding	protein_coding	6	138	2	1.95834	3.44391	4.92948	0.00823447	2.07392e-7	0.0772968	2.15311e-4
chr6	89818008	89818107	3162022	0	-	0.515152	(0.476,0.515]	chr6	294886	141	INTRON	INTRON	MDN1	ENSG00000112159.12	ENST00000369393.8:ENST00000629399.2:ENST00000439638.1	protein_coding	protein_coding	protein_coding	protein_coding	3	48	2	1.91525	3.4438899999999997	4.97253	0.0232571	0.00311573	0.127416	0.0498063
chr19	23764433	23764533	7042443	0	+	0.38	(0.378,0.408]	chr19	702194	9	INTRON	INTRON	RPSAP58	ENSG00000288920.1	ENST00000471224.5:ENST00000692590.1:ENST00000475499.2:ENST00000686829.1:ENST00000689525.1:ENST00000691397.1:ENST00000688405.1:ENST00000692739.1:ENST00000687994.1:ENST00000484897.4:ENST00000685013.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	49	2	1.65821	3.4437249999999997	5.22924	0.0506302	0.00172721	0.17547	0.0374701
chr17	40236616	40236716	6609637	0	+	0.52	(0.515,0.57]	chr17	643734	157	INTRON	INTRON	WIPF2	ENSG00000171475.14	ENST00000323571.9:ENST00000583268.1:ENST00000494757.5:ENST00000582781.5:ENST00000585043.5:ENST00000394103.7:ENST00000583130.5:ENST00000584296.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	50	2	1.84511	3.44368	5.04225	0.0167182	0.00131841	0.110511	0.0331539
chr3	177176704	177176803	1872241	0	-	0.555556	(0.515,0.57]	chr3	187438	54	INTRON	INTRON	TBL1XR1	ENSG00000177565.18	ENST00000457928.7:ENST00000430069.5:ENST00000673974.1:ENST00000352800.10:ENST00000422442.6:ENST00000428970.5:ENST00000424913.5:ENST00000437738.5:ENST00000431421.5:ENST00000635794.1:ENST00000630796.2:ENST00000450267.5:ENST00000630833.2:ENST00000431674.5:ENST00000422066.5:ENST00000443315.5:ENST00000627825.2:ENST00000427349.5:ENST00000413084.5:ENST00000637137.1:ENST00000491623.2:ENST00000637544.1:ENST00000636187.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	50	2	1.84511	3.44368	5.04225	0.0167182	0.00131841	0.110511	0.0331539
chr12	122510808	122510908	5442079	0	-	0.44	(0.408,0.44]	chr12	520546	3	SS5_PROX	SS5_PROX:INTRON	RSRC2	ENSG00000111011.18	ENST00000331738.12:ENST00000532695.5:ENST00000433877.6:ENST00000527173.6:ENST00000392442.6:ENST00000525335.6:ENST00000344591.8:ENST00000528263.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	65	2	1.99397	3.44362	4.89327	0.00610802	0.00458906	0.0706941	0.0595107
chr15	94915235	94915335	6105786	0	+	0.38	(0.378,0.408]	chr15	581682	103	INTRON	INTRON	ENSG00000277654	ENSG00000277654.6	ENST00000618611.4:ENST00000648065.1:ENST00000618377.1:ENST00000621842.4:ENST00000615751.4:ENST00000614581.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	1	33	2	2.46373	3.44361	4.42349	0.0382831	0.00992961	0.141795	0.0877296
chr3	136745298	136745398	1828391	0	-	0.39	(0.378,0.408]	chr3	183745	1140	INTRON	INTRON	STAG1	ENSG00000118007.13	ENST00000383202.7:ENST00000236698.9:ENST00000434713.6:ENST00000483235.5:ENST00000629124.2:ENST00000487065.5:ENST00000480733.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	33	2	2.46373	3.44361	4.42349	0.0382831	0.00992961	0.141795	0.0877296
chr11	78137845	78137945	4998327	0	-	0.35	(0.32,0.35]	chr11	472392	2	SS3_PROX	SS3_PROX:INTRON	ALG8	ENSG00000159063.14	ENST00000679559.1:ENST00000680398.1:ENST00000681221.1:ENST00000527099.2:ENST00000681489.1:ENST00000525783.6:ENST00000529139.6:ENST00000680761.1:ENST00000525870.6:ENST00000680866.1:ENST00000680223.1:ENST00000526737.6:ENST00000681575.1:ENST00000299626.10:ENST00000680467.1:ENST00000679497.1:ENST00000681351.1:ENST00000679697.1:ENST00000680580.1:ENST00000526849.6:ENST00000680256.1:ENST00000680797.1:ENST00000681723.1:ENST00000680142.1:ENST00000679685.1:ENST00000681384.1:ENST00000679874.1:ENST00000679444.1:ENST00000680459.1:ENST00000681699.1:ENST00000679986.1:ENST00000680063.1:ENST00000530608.6:ENST00000681765.1:ENST00000681225.1:ENST00000681417.1:ENST00000530910.6:ENST00000680329.1:ENST00000376156.7:ENST00000679648.1:ENST00000680101.1:ENST00000680829.1:ENST00000525761.3:ENST00000532440.6:ENST00000680996.1:ENST00000532306.6:ENST00000680399.1:ENST00000679539.1:ENST00000615266.5:ENST00000681957.1:ENST00000532552.2:ENST00000680643.1:ENST00000530454.6:ENST00000525755.6:ENST00000532050.5:ENST00000526928.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	68	2	1.65179	3.443495	5.2352	0.0245569	0.0028268	0.131869	0.0472361
chr13	95215368	95215467	5639011	0	-	0.333333	(0.32,0.35]	chr13	537151	42	INTRON	INTRON	ABCC4	ENSG00000125257.16	ENST00000645237.2:ENST00000643051.1:ENST00000643842.1:ENST00000646439.1:ENST00000643816.1:ENST00000536256.3:ENST00000643556.1:ENST00000629385.1:ENST00000642524.1:ENST00000645532.1:ENST00000644471.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	63	2	1.98909	3.443385	4.89768	0.0108865	0.00793135	0.0923273	0.076155
chr16	89778631	89778700	6544416	0	-	0.202899	[0,0.28]	chr16	634516	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	FANCA	ENSG00000187741.16	ENST00000561667.2:ENST00000389301.8:ENST00000568369.6:ENST00000564475.6:ENST00000696275.1:ENST00000696287.1:ENST00000696286.1:ENST00000696274.1:ENST00000567510.2:ENST00000696291.1:ENST00000696276.1:ENST00000567205.2:ENST00000567284.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	41	2	2.33055	3.443365	4.55618	0.062338	0.0171034	0.175343	0.110899
chr5	113561385	113561485	2454350	0	+	0.17	[0,0.28]	chr5	235230	2	SS5_PROX	SS5_PROX:INTRON	YTHDC2	ENSG00000047188.16	ENST00000161863.9	protein_coding	protein_coding	protein_coding	protein_coding	1	41	2	2.33055	3.443365	4.55618	0.062338	0.0171034	0.175343	0.110899
chr1	35376389	35376488	69374	0	+	0.313131	(0.28,0.32]	chr1	8759	54	INTRON	INTRON	ZMYM4	ENSG00000146463.12	ENST00000314607.11:ENST00000457946.1	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	2.46018	3.4432400000000003	4.4263	0.0375904	0.0330296	0.156054	0.133816
chr12	120804822	120804922	5434909	0	-	0.31	(0.28,0.32]	chr12	519651	129	INTRON	INTRON	SPPL3	ENSG00000157837.16	ENST00000353487.7:ENST00000536996.5:ENST00000543608.5:ENST00000543854.5:ENST00000543181.5:ENST00000540091.1	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	2.46018	3.4432400000000003	4.4263	0.0375904	0.0330296	0.156054	0.133816
chr15	37075502	37075601	6143815	0	-	0.313131	(0.28,0.32]	chr15	584838	86	INTRON	INTRON	MEIS2	ENSG00000134138.20	ENST00000338564.9:ENST00000561208.6:ENST00000397624.7:ENST00000340545.9:ENST00000314177.12:ENST00000560570.5:ENST00000559085.5:ENST00000557796.6:ENST00000397620.6:ENST00000424352.6:ENST00000559561.5:ENST00000607277.5:ENST00000561163.5:ENST00000606653.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	34	2	2.46018	3.4432400000000003	4.4263	0.0375904	0.0330296	0.156054	0.133816
chr3	31582086	31582185	1391891	0	+	0.292929	(0.28,0.32]	chr3	145698	16	INTRON	INTRON	STT3B	ENSG00000163527.10	ENST00000453168.5:ENST00000295770.4:ENST00000423527.5:ENST00000462235.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	34	2	2.46018	3.4432400000000003	4.4263	0.0375904	0.0330296	0.156054	0.133816
chr3	172271331	172271431	1561874	0	+	0.31	(0.28,0.32]	chr3	161582	194	INTRON	INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000469491.5:ENST00000336824.8:ENST00000416957.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	34	2	2.46018	3.4432400000000003	4.4263	0.0375904	0.0330296	0.156054	0.133816
chr3	197081417	197081517	1901310	0	-	0.29	(0.28,0.32]	chr3	190536	3	SS3_PROX	SS3_PROX:INTRON	DLG1	ENSG00000075711.21	ENST00000667157.1:ENST00000346964.6:ENST00000656428.1:ENST00000663148.1:ENST00000655488.1:ENST00000357674.9:ENST00000671185.1:ENST00000658701.1:ENST00000667104.1:ENST00000661336.1:ENST00000669565.1:ENST00000670455.1:ENST00000656087.1:ENST00000670366.1:ENST00000653583.1:ENST00000653795.1:ENST00000671246.1:ENST00000661453.1:ENST00000665728.1:ENST00000664564.1:ENST00000653331.1:ENST00000660432.1:ENST00000660898.1:ENST00000657381.1:ENST00000659221.1:ENST00000654737.1:ENST00000669332.1:ENST00000659716.1:ENST00000660553.1:ENST00000664991.1:ENST00000419354.5:ENST00000661440.1:ENST00000667971.1:ENST00000670935.1:ENST00000668578.1:ENST00000666007.1:ENST00000661229.1:ENST00000660237.1:ENST00000657098.1:ENST00000661013.1:ENST00000436682.6:ENST00000452595.5:ENST00000662727.1:ENST00000422288.6:ENST00000448528.6:ENST00000443183.5:ENST00000656944.1:ENST00000392382.6:ENST00000450955.5:ENST00000658155.1:ENST00000669714.1:ENST00000654733.1:ENST00000469073.2:ENST00000419227.5:ENST00000392381.7:ENST00000471733.5:ENST00000493937.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	34	2	2.46018	3.4432400000000003	4.4263	0.0375904	0.0330296	0.156054	0.133816
chr5	168571880	168571979	2770645	0	-	0.30303	(0.28,0.32]	chr5	260749	25	INTRON	INTRON	PANK3	ENSG00000120137.7	ENST00000239231.7:ENST00000522176.1	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	2.46018	3.4432400000000003	4.4263	0.0375904	0.0330296	0.156054	0.133816
chrX	154790522	154790612	7915455	0	-	0.344444	(0.32,0.35]	chrX	806154	1	SS5_PROX	SS5_PROX:INTRON	MPP1	ENSG00000130830.15	ENST00000369534.8:ENST00000413259.7:ENST00000439370.5:ENST00000393531.5:ENST00000453245.5:ENST00000494170.1:ENST00000462825.5:ENST00000393529.5:ENST00000475943.5:ENST00000428488.1:ENST00000488754.5:ENST00000417435.5:ENST00000488694.1:ENST00000369531.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	122	2	2.98312	3.44313	3.90314	3.02468e-4	2.71305e-4	0.0160895	0.014624
chr1	16317730	16317830	382272	0	-	0.52	(0.515,0.57]	chr1	44888	19	INTRON	INTRON	FBXO42	ENSG00000037637.11	ENST00000375592.8	protein_coding	protein_coding	protein_coding	protein_coding	2	38	2	2.57298	3.4431199999999995	4.31326	0.0141817	0.00506495	0.0959618	0.0646039
chr1	207348358	207348457	303544	0	+	0.313131	(0.28,0.32]	chr1	34932	4	INTRON	INTRON	CD55	ENSG00000196352.18	ENST00000695822.1:ENST00000695823.1:ENST00000695826.1:ENST00000695825.1:ENST00000695827.1:ENST00000645323.1:ENST00000391921.9:ENST00000367064.9:ENST00000314754.12:ENST00000644836.1:ENST00000476590.1:ENST00000465534.5:ENST00000618707.2:ENST00000635614.2:ENST00000695831.1:ENST00000634386.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	34	2	2.29724	3.442995	4.58875	0.0554156	0.0230574	0.18407	0.118056
chr10	98169888	98169988	4505902	0	+	0.32	(0.28,0.32]	chr10	414862	61	INTRON	INTRON	R3HCC1L	ENSG00000166024.14	ENST00000370584.7:ENST00000298999.8:ENST00000370586.6:ENST00000612478.4:ENST00000314594.6:ENST00000613938.4	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	2.29724	3.442995	4.58875	0.0554156	0.0230574	0.18407	0.118056
chr11	125647297	125647395	4883210	0	+	0.295918	(0.28,0.32]	chr11	456600	23	INTRON	INTRON	CHEK1	ENSG00000149554.14	ENST00000438015.7:ENST00000427383.6:ENST00000428830.6:ENST00000544373.5:ENST00000278916.8:ENST00000532449.6:ENST00000534070.5:ENST00000524737.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	34	2	2.29724	3.442995	4.58875	0.0554156	0.0230574	0.18407	0.118056
chr15	57990016	57990116	6186769	0	-	0.32	(0.28,0.32]	chr15	589736	238	INTRON	INTRON	ALDH1A2	ENSG00000128918.15	ENST00000537372.5:ENST00000249750.9:ENST00000347587.7:ENST00000430119.6:ENST00000558231.5:ENST00000559517.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	34	2	2.29724	3.442995	4.58875	0.0554156	0.0230574	0.18407	0.118056
chr18	35256521	35256621	6961565	0	-	0.32	(0.28,0.32]	chr18	688830	2	SS3_PROX	SS3_PROX:INTRON	ZSCAN30	ENSG00000186814.14	ENST00000610712.1:ENST00000333206.10:ENST00000420878.7:ENST00000639929.1	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	2.29724	3.442995	4.58875	0.0554156	0.0230574	0.18407	0.118056
chr20	43688070	43688169	7276269	0	+	0.292929	(0.28,0.32]	chr20	739741	6	INTRON	INTRON	MYBL2	ENSG00000101057.16	ENST00000396863.8:ENST00000217026.5	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	2.29724	3.442995	4.58875	0.0554156	0.0230574	0.18407	0.118056
chr3	182946640	182946737	1879590	0	-	0.28866000000000003	(0.28,0.32]	chr3	187790	11	INTRON	INTRON	DCUN1D1	ENSG00000043093.15	ENST00000292782.9:ENST00000632685.1:ENST00000460412.6:ENST00000469954.5:ENST00000492563.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	34	2	2.29724	3.442995	4.58875	0.0554156	0.0230574	0.18407	0.118056
chr5	176950873	176950973	2776367	0	-	0.32	(0.28,0.32]	chr5	261532	70	INTRON	INTRON	UIMC1	ENSG00000087206.17	ENST00000377227.8:ENST00000511320.6:ENST00000506128.5:ENST00000512031.5:ENST00000510698.2:ENST00000503273.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	34	2	2.29724	3.442995	4.58875	0.0554156	0.0230574	0.18407	0.118056
chr6	111425457	111425557	3191782	0	-	0.32	(0.28,0.32]	chr6	297346	86	INTRON	INTRON	REV3L	ENSG00000009413.16	ENST00000422377.5:ENST00000434009.5:ENST00000368802.8:ENST00000435970.5:ENST00000358835.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	34	2	2.29724	3.442995	4.58875	0.0554156	0.0230574	0.18407	0.118056
chr7	10773783	10773883	3484518	0	-	0.29	(0.28,0.32]	chr7	325772	2119	INTRON	INTRON	MGC4859	ENSG00000283117.1	ENST00000634803.1	lncRNA	lncRNA	lncRNA	lncRNA	1	34	2	2.29724	3.442995	4.58875	0.0554156	0.0230574	0.18407	0.118056
chr9	112252081	112252177	4317139	0	-	0.291667	(0.28,0.32]	chr9	397048	6	INTRON	INTRON	PTBP3	ENSG00000119314.16	ENST00000334318.10:ENST00000458258.5:ENST00000374257.6:ENST00000374255.6:ENST00000343327.6	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	2.29724	3.442995	4.58875	0.0554156	0.0230574	0.18407	0.118056
chr10	7271202	7271301	4551530	0	-	0.545455	(0.515,0.57]	chr10	420212	222	INTRON	INTRON	SFMBT2	ENSG00000198879.13	ENST00000397167.6:ENST00000361972.8:ENST00000684547.1:ENST00000683762.1:ENST00000673876.1:ENST00000682896.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	40	2	2.38476	3.44289	4.50102	0.0110593	0.00510768	0.0873897	0.0646039
chr3	195660557	195660657	1593448	0	+	0.41	(0.408,0.44]	chr3	165006	20	INTRON	INTRON	MUC20-OT1	ENSG00000242086.8	ENST00000457233.5:ENST00000429897.5:ENST00000452844.5:ENST00000453324.5:ENST00000445430.5:ENST00000425425.1	lncRNA	lncRNA	lncRNA	lncRNA	3	88	2	3.2225799999999998	3.44284	3.6631	6.21419e-4	2.79412e-4	0.0229151	0.0148832
chr4	82900490	82900569	2180212	0	-	0.518987	(0.515,0.57]	chr4	214432	3	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	SEC31A:THAP9-AS1	ENSG00000138674.17:ENSG00000251022.6	ENST00000355196.6:ENST00000503210.5:ENST00000507676.5:ENST00000506495.5:ENST00000507051.1:ENST00000504520.6:ENST00000504792.6:ENST00000512932.5:ENST00000511271.5:ENST00000508772.5:ENST00000513581.5:ENST00000504718.5:ENST00000505028.5:ENST00000507660.5:ENST00000509007.1:ENST00000504869.1:ENST00000503704.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	5	121	2	3.17958	3.44278	3.70598	5.55863e-5	1.95822e-5	0.00610109	0.00358497
chr18	21690930	21691029	6955533	0	-	0.414141	(0.408,0.44]	chr18	688091	66	INTRON	INTRON	ABHD3	ENSG00000158201.10	ENST00000289119.7:ENST00000580981.5:ENST00000578270.5:ENST00000577891.1:ENST00000579875.5:ENST00000584464.1:ENST00000577928.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	49	2	2.13157	3.442775	4.75398	0.0109031	0.00703931	0.0923273	0.0718189
chr2	151808818	151808915	1243540	0	-	0.484536	(0.476,0.515]	chr2	132037	15	INTRON	INTRON	ARL5A:ENSG00000283228	ENSG00000162980.17:ENSG00000283228.1	ENST00000446896.7:ENST00000295087.13:ENST00000636024.1:ENST00000637224.1:ENST00000458140.6:ENST00000428992.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	49	2	2.11679	3.44253	4.76827	0.0115627	0.00600704	0.0962115	0.0674604
chr7	72886845	72886945	3329864	0	+	0.35	(0.32,0.35]	chr7	309555	66	INTRON	INTRON	POM121	ENSG00000196313.13	ENST00000627934.3:ENST00000395270.5	protein_coding	protein_coding	protein_coding	protein_coding	2	76	2	3.38612	3.442405	3.49869	0.00249604	0.00108004	0.0446195	0.0300133
chr18	1294721	1294821	6941125	0	-	0.26	[0,0.28]	chr18	686573	155	INTRON	INTRON	LINC00470	ENSG00000132204.14	ENST00000657423.1:ENST00000657618.1:ENST00000584090.5:ENST00000660947.1:ENST00000669242.1:ENST00000660475.1:ENST00000653775.1:ENST00000661931.1:ENST00000412816.7:ENST00000577867.5:ENST00000584492.5:ENST00000667416.1:ENST00000661852.1:ENST00000657919.1:ENST00000661646.1:ENST00000667776.1:ENST00000654559.1:ENST00000661233.1:ENST00000653213.1:ENST00000659094.1:ENST00000660964.1:ENST00000577403.6:ENST00000660358.1:ENST00000669153.1:ENST00000657121.1:ENST00000655957.1:ENST00000659289.1:ENST00000665133.1:ENST00000671558.1:ENST00000666542.1:ENST00000663512.1:ENST00000582862.6:ENST00000578835.5:ENST00000669312.1:ENST00000581430.5:ENST00000581212.1	lncRNA	lncRNA	lncRNA	lncRNA	1	43	2	2.59548	3.442315	4.28915	0.0346067	0.0319595	0.14477	0.136649
chr1	55071076	55071174	464367	0	-	0.367347	(0.35,0.378]	chr1	55917	16	INTRON	INTRON	USP24	ENSG00000162402.14	ENST00000294383.7	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	2.79643	3.442295	4.08816	0.046021	0.013543	0.149888	0.101363
chr10	72693665	72693764	4450100	0	+	0.373737	(0.35,0.378]	chr10	410727	2	INTRON	INTRON	MCU	ENSG00000156026.15	ENST00000373053.8:ENST00000357157.10:ENST00000604679.5:ENST00000604372.5:ENST00000603649.5:ENST00000605597.5:ENST00000536019.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	32	2	2.79643	3.442295	4.08816	0.046021	0.013543	0.149888	0.101363
chr2	174191081	174191181	1270278	0	-	0.36	(0.35,0.378]	chr2	134282	487	INTRON	INTRON	OLA1	ENSG00000138430.16	ENST00000284719.8:ENST00000344357.9:ENST00000428402.6:ENST00000409546.5:ENST00000429575.1	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	2.79643	3.442295	4.08816	0.046021	0.013543	0.149888	0.101363
chr8	42393984	42394046	3743972	0	+	0.370968	(0.35,0.378]	chr8	348275	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	VDAC3	ENSG00000078668.14	ENST00000518563.5:ENST00000520115.5:ENST00000522069.5:ENST00000522572.5:ENST00000022615.9:ENST00000519072.5:ENST00000521348.5:ENST00000518495.5:ENST00000521158.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	32	2	2.79643	3.442295	4.08816	0.046021	0.013543	0.149888	0.101363
chr8	52693545	52693644	3950899	0	-	0.353535	(0.35,0.378]	chr8	362390	62	INTRON	INTRON	RB1CC1	ENSG00000023287.13	ENST00000025008.10:ENST00000435644.6:ENST00000521611.1:ENST00000518710.5:ENST00000517963.1:ENST00000518211.1:ENST00000518468.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	32	2	2.79643	3.442295	4.08816	0.046021	0.013543	0.149888	0.101363
chr2	202270251	202270350	984955	0	+	0.353535	(0.35,0.378]	chr2	105703	39	INTRON	INTRON	NOP58	ENSG00000055044.11	ENST00000488403.5:ENST00000426814.5:ENST00000264279.10:ENST00000472050.5:ENST00000492740.5:ENST00000467734.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	46	2	1.98929	3.44226	4.89523	0.0417909	0.00253947	0.147075	0.0465056
chr20	47294879	47294979	7348889	0	-	0.36	(0.35,0.378]	chr20	749329	1	SS3_PROX	SS3_PROX:INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000467200.6:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000468376.2:ENST00000435836.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	46	2	1.98929	3.44226	4.89523	0.0417909	0.00253947	0.147075	0.0465056
chr1	223746403	223746496	320596	0	+	0.333333	(0.32,0.35]	chr1	36872	6	INTRON	INTRON	CAPN2	ENSG00000162909.18	ENST00000433674.6:ENST00000434648.5:ENST00000295006.6	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	2.71269	3.4422499999999996	4.17181	0.04531	0.0181461	0.149888	0.114853
chr16	16010001	16010101	6308364	0	+	0.34	(0.32,0.35]	chr16	603521	1	SS5_PROX	SS5_PROX:INTRON	ABCC1	ENSG00000103222.20	ENST00000574224.2:ENST00000678422.1:ENST00000677164.1:ENST00000399408.7:ENST00000572882.3:ENST00000399410.8:ENST00000679043.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	33	2	2.71269	3.4422499999999996	4.17181	0.04531	0.0181461	0.149888	0.114853
chr3	50015711	50015811	1423717	0	+	0.35	(0.32,0.35]	chr3	149994	158	INTRON	INTRON	RBM6	ENSG00000004534.15	ENST00000442092.5:ENST00000443081.5:ENST00000419610.5:ENST00000441115.5:ENST00000422955.5:ENST00000454079.5:ENST00000266022.9:ENST00000425608.5:ENST00000434592.5:ENST00000464013.5:ENST00000483350.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	33	2	2.71269	3.4422499999999996	4.17181	0.04531	0.0181461	0.149888	0.114853
chr3	138555330	138555430	1829244	0	-	0.34	(0.32,0.35]	chr3	183871	176	INTRON	INTRON	CEP70	ENSG00000114107.9	ENST00000264982.8:ENST00000489254.5:ENST00000484888.5:ENST00000474781.5:ENST00000481834.5:ENST00000468900.5:ENST00000462419.5:ENST00000478673.5:ENST00000464035.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	33	2	2.71269	3.4422499999999996	4.17181	0.04531	0.0181461	0.149888	0.114853
chr7	27812257	27812357	3294087	0	+	0.35	(0.32,0.35]	chr7	306028	87	INTRON	INTRON	TAX1BP1	ENSG00000106052.14	ENST00000543117.5:ENST00000433216.6:ENST00000265393.10:ENST00000409980.5:ENST00000416801.6:ENST00000396319.7:ENST00000457186.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	33	2	2.71269	3.4422499999999996	4.17181	0.04531	0.0181461	0.149888	0.114853
chr14	63512036	63512136	5907592	0	-	0.36	(0.35,0.378]	chr14	561136	39	INTRON	INTRON	PPP2R5E	ENSG00000154001.14	ENST00000337537.8:ENST00000555899.1:ENST00000553266.5:ENST00000556878.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	128	2	3.26464	3.4422449999999998	3.61985	4.0384e-4	3.53207e-5	0.0185763	0.00474674
chr10	71822995	71823093	4642548	0	-	0.438776	(0.408,0.44]	chr10	427136	6	INTRON	INTRON	PSAP	ENSG00000197746.15	ENST00000394936.8:ENST00000633965.1	protein_coding	protein_coding	protein_coding	protein_coding	4	119	2	3.0946	3.442185	3.78977	7.51561e-4	1.03468e-5	0.0251179	0.00235262
chr19	55655453	55655553	7101517	0	+	0.41	(0.408,0.44]	chr19	712493	3	SS5_PROX	SS5_PROX:INTRON	U2AF2	ENSG00000063244.13	ENST00000450554.6:ENST00000308924.9:ENST00000588850.5:ENST00000587196.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	147	2	1.96132	3.442185	4.92305	0.00701866	6.69586e-7	0.0754576	4.85216e-4
chr11	77721975	77722074	4994984	0	-	0.454545	(0.44,0.476]	chr11	472023	37	INTRON	INTRON	RSF1	ENSG00000048649.14	ENST00000308488.11:ENST00000526324.5:ENST00000528095.5:ENST00000534794.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	66	2	3.12799	3.4420349999999997	3.75608	0.0050635	2.6487e-4	0.0621733	0.0144071
chr2	27596569	27596669	718069	0	+	0.41	(0.408,0.44]	chr2	83352	125	INTRON	INTRON	ZNF512	ENSG00000243943.10	ENST00000413371.6:ENST00000416005.6:ENST00000556601.5:ENST00000379717.5:ENST00000355467.6:ENST00000494548.1:ENST00000461705.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	107	2	2.51198	3.441915	4.37185	0.00288187	8.42461e-6	0.0475859	0.00209893
chr4	163135722	163135821	2280994	0	-	0.474747	(0.44,0.476]	chr4	221567	8	EXON_MRNA	EXON_MRNA:INTRON	NAF1	ENSG00000145414.9	ENST00000509434.5:ENST00000422287.6:ENST00000274054.3:ENST00000509232.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	193	2	3.39065	3.441855	3.49306	3.47318e-5	2.45105e-6	0.00498136	9.94123e-4
chr17	2643213	2643312	6547938	0	+	0.494949	(0.476,0.515]	chr17	635238	9	INTRON	INTRON	PAFAH1B1	ENSG00000007168.14	ENST00000576586.5:ENST00000397195.10:ENST00000676201.1:ENST00000575477.5:ENST00000675621.1:ENST00000676353.1:ENST00000674717.1:ENST00000675202.1:ENST00000675764.1:ENST00000674608.1:ENST00000676077.1:ENST00000676098.1:ENST00000572915.6:ENST00000570400.1:ENST00000675430.1:ENST00000675331.1:ENST00000676188.1:ENST00000574816.5:ENST00000675390.1:ENST00000676456.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	87	2	3.20821	3.4418249999999997	3.67544	5.51624e-4	3.05489e-4	0.0216014	0.0155972
chr2	135552174	135552273	874160	0	+	0.50505	(0.476,0.515]	chr2	97879	202	INTRON	INTRON	R3HDM1	ENSG00000048991.17	ENST00000483021.5:ENST00000463230.5:ENST00000683871.1:ENST00000409478.5:ENST00000264160.8:ENST00000438014.5:ENST00000488035.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	87	2	3.20821	3.4418249999999997	3.67544	5.51624e-4	3.05489e-4	0.0216014	0.0155972
chr8	99055026	99055125	3811676	0	+	0.393939	(0.378,0.408]	chr8	353065	161	INTRON	INTRON	VPS13B	ENSG00000132549.20	ENST00000496144.5:ENST00000683334.1:ENST00000682853.1:ENST00000357162.7:ENST00000358544.7:ENST00000683619.1:ENST00000441350.2:ENST00000684269.1:ENST00000682806.1:ENST00000683869.1:ENST00000682153.1:ENST00000682358.1:ENST00000682145.1:ENST00000355155.6:ENST00000682234.1:ENST00000683486.1:ENST00000684308.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	68	2	3.27922	3.441755	3.60429	0.00312717	5.71664e-4	0.0499153	0.0217398
chr8	127796471	127796571	3860061	0	+	0.56	(0.515,0.57]	chr8	355379	4	SS5_PROX	SS5_PROX:INTRON	PVT1	ENSG00000249859.13	ENST00000667305.1:ENST00000690350.1:ENST00000653522.1:ENST00000664214.1:ENST00000664139.1:ENST00000661830.1:ENST00000657289.1:ENST00000504719.7:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000656880.1:ENST00000660200.1:ENST00000669132.1:ENST00000657211.1:ENST00000653845.1:ENST00000517525.2:ENST00000665856.1:ENST00000651587.1:ENST00000692980.1:ENST00000666353.1:ENST00000657183.1:ENST00000654324.1:ENST00000658556.1:ENST00000657693.1:ENST00000666080.1:ENST00000667539.1:ENST00000521951.1:ENST00000524165.6:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000664293.1:ENST00000657297.1:ENST00000662410.1:ENST00000670795.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000654091.1:ENST00000523328.6:ENST00000657356.1:ENST00000523427.2:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000662061.1:ENST00000667204.1:ENST00000656491.1:ENST00000667714.1:ENST00000654105.1:ENST00000665721.1:ENST00000518528.2:ENST00000669416.1:ENST00000660438.1:ENST00000661160.1:ENST00000659326.1:ENST00000665246.1:ENST00000657384.1:ENST00000666842.1:ENST00000517790.2:ENST00000522963.6:ENST00000654369.1:ENST00000661625.1:ENST00000657596.1:ENST00000664995.1:ENST00000656532.1:ENST00000656168.1:ENST00000661988.1:ENST00000657517.1:ENST00000670714.1:ENST00000669951.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000656693.1:ENST00000668123.1:ENST00000666776.1:ENST00000664299.1:ENST00000669272.1:ENST00000659912.1:ENST00000670532.1:ENST00000660896.1:ENST00000667149.1:ENST00000656396.1:ENST00000523068.2	lncRNA	lncRNA	lncRNA	lncRNA	2	57	2	3.40388	3.441735	3.47959	0.00142538	8.38022e-4	0.0340865	0.0263691
chr12	121312999	121313098	5436770	0	-	0.525253	(0.515,0.57]	chr12	519847	26	INTRON	INTRON	ANAPC5	ENSG00000089053.13	ENST00000261819.8:ENST00000535641.5:ENST00000541887.5:ENST00000534976.5:ENST00000441917.6:ENST00000539079.5:ENST00000544314.5:ENST00000535482.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	56	2	1.77888	3.44168	5.10448	0.0139834	0.0010345	0.10247	0.029231300000000002
chr12	118336534	118336634	5429927	0	-	0.33	(0.32,0.35]	chr12	518768	390	INTRON	INTRON	TAOK3	ENSG00000135090.14	ENST00000392533.8:ENST00000419821.6:ENST00000541186.5:ENST00000541878.5:ENST00000542902.5:ENST00000542532.5:ENST00000541786.5:ENST00000539872.5:ENST00000542692.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	36	2	2.51061	3.44165	4.37269	0.0364463	0.0154102	0.138959	0.108569
chr2	43928853	43928953	1109914	0	-	0.35	(0.32,0.35]	chr2	119006	25	INTRON	INTRON	LRPPRC	ENSG00000138095.20	ENST00000260665.12:ENST00000682308.1:ENST00000683459.1:ENST00000683623.1:ENST00000683125.1:ENST00000683994.1:ENST00000684619.1:ENST00000683833.1:ENST00000682546.1:ENST00000682585.1:ENST00000683220.1:ENST00000683796.1:ENST00000682607.1:ENST00000683590.1:ENST00000684306.1:ENST00000683213.1:ENST00000682779.1:ENST00000682885.1:ENST00000684743.1:ENST00000683346.1:ENST00000683072.1:ENST00000682303.1:ENST00000683329.1:ENST00000682933.1:ENST00000684383.1:ENST00000682480.1:ENST00000684290.1:ENST00000684341.1:ENST00000682595.1:ENST00000683645.1:ENST00000683802.1:ENST00000682845.1:ENST00000684397.1:ENST00000681961.1:ENST00000683694.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	36	2	2.51061	3.44165	4.37269	0.0364463	0.0154102	0.138959	0.108569
chr7	101857248	101857348	3366761	0	+	0.33	(0.32,0.35]	chr7	315215	379	INTRON	INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000497815.5:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000607092.1:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000558469.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	36	2	2.51061	3.44165	4.37269	0.0364463	0.0154102	0.138959	0.108569
chr8	116744178	116744278	4034116	0	-	0.35	(0.32,0.35]	chr8	368079	65	INTRON	INTRON	EIF3H	ENSG00000147677.12	ENST00000521861.6:ENST00000276682.8:ENST00000518949.5:ENST00000518995.5:ENST00000522800.5:ENST00000518034.5:ENST00000517974.1:ENST00000522453.1:ENST00000519046.5:ENST00000520813.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	36	2	2.51061	3.44165	4.37269	0.0364463	0.0154102	0.138959	0.108569
chr19	41260296	41260394	7070999	0	+	0.397959	(0.378,0.408]	chr19	706698	5	UTR3	UTR3:EXON_MRNA	AXL	ENSG00000167601.12	ENST00000301178.9	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	2.78946	3.441625	4.09379	0.023912	0.0158859	0.129075	0.101453
chr10	42361931	42362031	4603395	0	-	0.39	(0.378,0.408]	chr10	424089	5	INTRON	INTRON	ENSG00000215146	ENSG00000215146.5	ENST00000609841.1:ENST00000650175.1:ENST00000609034.1:ENST00000609502.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	2	45	2	2.11194	3.4414949999999997	4.77105	0.0292534	0.00330823	0.128055	0.0527031
chr9	130801153	130801253	4214736	0	+	0.54	(0.515,0.57]	chr9	386427	863	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000393293.4	protein_coding	protein_coding	protein_coding	protein_coding	10	219	2	3.01524	3.441385	3.86753	7.18939e-6	4.56123e-7	0.00201767	3.5553e-4
chr12	42341624	42341723	5118374	0	+	0.575758	(0.57,1]	chr12	482920	53	INTRON	INTRON	PPHLN1	ENSG00000134283.18	ENST00000549190.5:ENST00000337898.10:ENST00000395580.7:ENST00000610488.4:ENST00000619544.4:ENST00000613154.4:ENST00000549774.5:ENST00000551723.5:ENST00000552429.5:ENST00000395568.6:ENST00000256678.12:ENST00000358314.12:ENST00000449194.6:ENST00000552761.5:ENST00000551406.5:ENST00000317560.13:ENST00000432191.6:ENST00000552202.5:ENST00000550535.5:ENST00000546750.5:ENST00000547847.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	26	2	2.28103	3.44132	4.60161	0.0151554	0.00142229	0.108535	0.0340865
chr14	100367499	100367593	5968816	0	-	0.595745	(0.57,1]	chr14	567112	11	INTRON	INTRON	WARS1	ENSG00000140105.18	ENST00000392882.7:ENST00000358655.8:ENST00000355338.6:ENST00000344102.9:ENST00000557135.5:ENST00000556645.5:ENST00000553395.5:ENST00000556504.5:ENST00000557722.5:ENST00000557297.5:ENST00000556435.5:ENST00000553808.5:ENST00000554331.5:ENST00000555063.5:ENST00000556338.5:ENST00000557239.5:ENST00000556698.5:ENST00000553524.5:ENST00000555410.5:ENST00000556579.5:ENST00000554772.5:ENST00000556660.5:ENST00000556783.5:ENST00000553413.5:ENST00000557094.5:ENST00000553769.6:ENST00000553545.5:ENST00000554820.5:ENST00000557347.5:ENST00000554509.5:ENST00000556209.5:ENST00000554605.5:ENST00000555813.5:ENST00000556695.5:ENST00000556295.5:ENST00000555031.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	26	2	2.28103	3.44132	4.60161	0.0151554	0.00142229	0.108535	0.0340865
chr1	71077666	71077763	482994	0	-	0.453608	(0.44,0.476]	chr1	57878	4	INTRON	INTRON	ZRANB2	ENSG00000132485.14	ENST00000370920.8:ENST00000254821.10:ENST00000611683.1	protein_coding	protein_coding	protein_coding	protein_coding	3	88	2	2.88062	3.4412700000000003	4.00192	0.001878	7.32704e-5	0.039073	0.00714177
chr11	67133665	67133764	4812590	0	+	0.575758	(0.57,1]	chr11	448106	12	INTRON	INTRON	KDM2A	ENSG00000173120.15	ENST00000529006.7:ENST00000398645.6:ENST00000532436.5:ENST00000527157.1:ENST00000308783.9	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	57	2	2.81549	3.4412450000000003	4.067	3.90081e-4	2.30559e-5	0.0177751	0.00391568
chr15	22576853	22576949	5975372	0	+	0.46875	(0.44,0.476]	chr15	568227	2	EXON_LNCRNA	EXON_LNCRNA:SS3_PROX:INTRON	HERC2P2	ENSG00000276550.5	ENST00000613386.4:ENST00000619021.4:ENST00000618651.1:ENST00000690192.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	7	179	2	3.14998	3.441245	3.73251	2.74071e-5	9.63147e-6	0.00430942	0.00224473
chr16	56942337	56942433	6361254	0	+	0.333333	(0.32,0.35]	chr16	610632	1	SS5_PROX	SS5_PROX:INTRON	HERPUD1	ENSG00000051108.15	ENST00000439977.7:ENST00000300302.9:ENST00000344114.8:ENST00000570273.5:ENST00000379792.6:ENST00000568358.1:ENST00000564678.1:ENST00000563911.5:ENST00000568651.1:ENST00000568814.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	49	2	2.71053	3.4411699999999996	4.17181	0.04531	0.00346747	0.149888	0.0539802
chr8	31061629	31061727	3728213	0	+	0.336735	(0.32,0.35]	chr8	346535	20	INTRON	INTRON	WRN	ENSG00000165392.11	ENST00000650667.1:ENST00000298139.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	191	2	3.43599	3.4411699999999996	3.44635	2.01759e-4	5.92503e-6	0.0129814	0.00170648
chr3	172790161	172790261	1563626	0	+	0.39	(0.378,0.408]	chr3	161807	32	INTRON	INTRON	ECT2	ENSG00000114346.14	ENST00000232458.9:ENST00000540509.5:ENST00000392692.8:ENST00000417960.5:ENST00000441497.6	protein_coding	protein_coding	protein_coding	protein_coding	2	41	2	2.29798	3.441125	4.58427	0.0147606	0.0128325	0.106702	0.0926667
chr12	112407082	112407179	5417779	0	-	0.391753	(0.378,0.408]	chr12	517687	3	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	RPL6	ENSG00000089009.16	ENST00000202773.14:ENST00000424576.6:ENST00000546368.2:ENST00000550238.1:ENST00000551041.6:ENST00000552455.5:ENST00000550566.6:ENST00000549847.5:ENST00000551291.6:ENST00000553213.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	68	2	3.32016	3.4411199999999997	3.56208	0.00268328	6.94246e-4	0.0464781	0.0240761
chr17	35596345	35596444	6599625	0	+	0.323232	(0.32,0.35]	chr17	642232	19	INTRON	INTRON	AP2B1	ENSG00000006125.18	ENST00000589774.5:ENST00000616784.4:ENST00000621914.4:ENST00000620039.4:ENST00000616681.4:ENST00000621668.4:ENST00000610402.5:ENST00000612035.4:ENST00000591610.5:ENST00000590538.5:ENST00000614600.4:ENST00000590432.5:ENST00000612116.5:ENST00000618940.4:ENST00000588093.1:ENST00000592167.5:ENST00000593014.3:ENST00000628168.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	106	2	2.46027	3.441	4.42173	0.0108973	9.72371e-6	0.0873034	0.00226193
chr4	183700852	183700945	2086604	0	+	0.537634	(0.515,0.57]	chr4	206269	1	EXON_MRNA	EXON_MRNA:INTRON	TRAPPC11	ENSG00000168538.16	ENST00000357207.8:ENST00000334690.11:ENST00000505676.5:ENST00000512476.1:ENST00000511955.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	63	2	1.83953	3.44089	5.04225	0.00755489	0.00131841	0.0773151	0.0331539
chr1	50852032	50852132	451173	0	-	0.27	[0,0.28]	chr1	54261	500	INTRON	INTRON	FAF1	ENSG00000185104.21	ENST00000396153.7:ENST00000487898.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	59	2	2.17149	3.44083	4.71017	0.0308079	0.0114708	0.13151	0.0956037
chr10	24592412	24592512	4580605	0	-	0.3	(0.28,0.32]	chr10	422085	4	SS3_PROX	SS3_PROX:INTRON	ARHGAP21	ENSG00000107863.20	ENST00000612832.4:ENST00000396432.7:ENST00000680286.1:ENST00000486374.5:ENST00000376410.7:ENST00000638156.1:ENST00000636789.1:ENST00000418033.5:ENST00000482792.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	35	2	2.73945	3.4407950000000005	4.14214	0.0579756	0.017681	0.167723	0.11319
chr11	118771945	118772045	5046175	0	-	0.31	(0.28,0.32]	chr11	475786	32	INTRON	INTRON	DDX6	ENSG00000110367.14	ENST00000534980.7:ENST00000620157.4:ENST00000526070.2:ENST00000525082.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	35	2	2.73945	3.4407950000000005	4.14214	0.0579756	0.017681	0.167723	0.11319
chr2	158647677	158647777	899075	0	+	0.31	(0.28,0.32]	chr2	99436	46	INTRON	INTRON	PKP4	ENSG00000144283.23	ENST00000389759.8:ENST00000426248.7:ENST00000389757.7:ENST00000452162.5:ENST00000421462.5:ENST00000492496.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	35	2	2.73945	3.4407950000000005	4.14214	0.0579756	0.017681	0.167723	0.11319
chr4	56989953	56990051	1964041	0	+	0.285714	(0.28,0.32]	chr4	197107	32	INTRON	INTRON	POLR2B	ENSG00000047315.17	ENST00000450656.5:ENST00000381227.5:ENST00000431623.6:ENST00000441246.6:ENST00000314595.6:ENST00000433463.1	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	2.73945	3.4407950000000005	4.14214	0.0579756	0.017681	0.167723	0.11319
chr7	103118395	103118492	3592586	0	-	0.28866000000000003	(0.28,0.32]	chr7	335289	29	INTRON	INTRON	NAPEPLD	ENSG00000161048.12	ENST00000341533.8:ENST00000465647.6:ENST00000417955.5:ENST00000422589.5:ENST00000420631.5:ENST00000427257.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	35	2	2.73945	3.4407950000000005	4.14214	0.0579756	0.017681	0.167723	0.11319
chr1	1752116	1752214	361451	0	-	0.387755	(0.378,0.408]	chr1	42148	10	UTR3	UTR3:EXON_MRNA	NADK	ENSG00000008130.15	ENST00000378625.5:ENST00000341991.7:ENST00000341426.9	protein_coding	protein_coding	protein_coding	protein_coding	2	72	2	3.1136	3.44067	3.76774	0.00443339	4.21442e-4	0.061054	0.0189827
chrX	123628662	123628759	7877986	0	-	0.340206	(0.32,0.35]	chrX	802471	3	INTRON	INTRON	THOC2	ENSG00000125676.20	ENST00000245838.13:ENST00000355725.8:ENST00000491737.5	protein_coding	protein_coding	protein_coding	protein_coding	3	102	2	3.36317	3.440625	3.51808	0.00151238	1.69213e-4	0.0352794	0.0112853
chr1	193200597	193200696	285408	0	+	0.40404	(0.378,0.408]	chr1	32823	135	INTRON	INTRON	CDC73	ENSG00000134371.14	ENST00000649895.1:ENST00000643006.1:ENST00000367435.5:ENST00000650197.1:ENST00000648071.1:ENST00000635846.1:ENST00000649613.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	43	2	2.56408	3.4405349999999997	4.31699	0.0250408	0.00566993	0.12011	0.0678837
chr22	37854385	37854482	7511740	0	+	0.371134	(0.35,0.378]	chr22	767167	25	INTRON	INTRON	EIF3L	ENSG00000100129.18	ENST00000412331.6:ENST00000624234.3:ENST00000439997.5:ENST00000381683.10:ENST00000476955.5:ENST00000652021.1:ENST00000436452.6:ENST00000414316.5:ENST00000477256.5:ENST00000406934.5:ENST00000451427.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	117	2	2.82068	3.440455	4.06023	0.00084924900000000005	6.28901e-5	0.0267232	0.00658818
chr5	32170048	32170148	2597473	0	-	0.25	[0,0.28]	chr5	246744	258	INTRON	INTRON	GOLPH3	ENSG00000113384.14	ENST00000265070.7:ENST00000503610.5:ENST00000512668.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	77	2	1.40573	3.440435	5.47514	0.0578123	0.00354561	0.188564	0.0529186
chr1	204533219	204533319	297590	0	+	0.37	(0.35,0.378]	chr1	34288	4	SS5_PROX	SS5_PROX:INTRON	MDM4	ENSG00000198625.14	ENST00000367183.7:ENST00000391947.6:ENST00000454264.6:ENST00000612738.4:ENST00000614459.4:ENST00000616250.4:ENST00000367182.8:ENST00000463049.5:ENST00000470908.5:ENST00000471783.1:ENST00000367180.5:ENST00000507825.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	64	2	1.47599	3.44022	5.40445	0.0425671	0.00114224	0.162011	0.0307966
chr7	12347441	12347539	3484845	0	-	0.27551	[0,0.28]	chr7	325854	11	INTRON	INTRON	VWDE	ENSG00000146530.15	ENST00000275358.8:ENST00000452576.6:ENST00000521169.5:ENST00000649524.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	208	2	3.11926	3.440155	3.76105	2.15061e-4	9.4492e-5	0.0128759	0.00865927
chr7	100341232	100341328	3364389	0	+	0.354167	(0.35,0.378]	chr7	314640	4	EXON_LNCRNA	EXON_LNCRNA:INTRON	STAG3L5P:STAG3L5P-PVRIG2P-PILRB	ENSG00000242294.6:ENSG00000272752.6	ENST00000473757.5:ENST00000470714.5:ENST00000310771.8:ENST00000483329.6:ENST00000422479.5:ENST00000444874.5:ENST00000488972.6:ENST00000493499.1	lncRNA	retained_intron	lncRNA:transcribed_unprocessed_pseudogene	retained_intron:lncRNA:processed_transcript	10	244	2	2.65806	3.440155	4.22225	5.38311e-5	2.2958e-6	0.00600644	0.00105402
chr10	63500352	63500452	4635737	0	-	0.46	(0.44,0.476]	chr10	426242	345	INTRON	INTRON	JMJD1C	ENSG00000171988.20	ENST00000633035.1	protein_coding	processed_transcript	protein_coding	processed_transcript	4	117	2	3.29785	3.440075	3.5823	2.77287e-4	3.73617e-5	0.0152764	0.00489903
chr1	230100231	230100331	334409	0	+	0.4	(0.378,0.408]	chr1	38930	83	INTRON	INTRON	GALNT2	ENSG00000143641.10	ENST00000494106.1:ENST00000366672.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	34	2	2.66785	3.440055	4.21226	0.0224639	0.0177403	0.11692	0.11319
chr12	23232277	23232377	5285941	0	-	0.38	(0.378,0.408]	chr12	503634	493	INTRON	INTRON	ENSG00000115934	ENSG00000115934.11	ENST00000538297.1	lncRNA	lncRNA	lncRNA	lncRNA	1	34	2	2.66785	3.440055	4.21226	0.0224639	0.0177403	0.11692	0.11319
chr17	30885606	30885705	6590981	0	+	0.40404	(0.378,0.408]	chr17	641016	58	INTRON	INTRON	ATAD5	ENSG00000176208.9	ENST00000321990.5	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	2.66785	3.440055	4.21226	0.0224639	0.0177403	0.11692	0.11319
chr1	1516388	1516488	1892	0	+	0.4	(0.378,0.408]	chr1	448	3	SS5_PROX	SS5_PROX:INTRON	ATAD3A	ENSG00000197785.14	ENST00000378756.8:ENST00000672388.1:ENST00000378755.9:ENST00000339113.9:ENST00000536055.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	91	2	3.33592	3.43999	3.54406	0.00110718	1.591e-4	0.0306086	0.0108481
chr21	38105029	38105129	7463936	0	-	0.27	[0,0.28]	chr21	760303	53	INTRON	INTRON	DSCR4	ENSG00000184029.9	ENST00000398948.5:ENST00000328264.7:ENST00000482032.1	lncRNA	lncRNA	lncRNA	lncRNA	3	60	2	1.66929	3.439915	5.21054	0.0537506	0.00758653	0.180803	0.0749063
chr2	208685981	208686081	996257	0	+	0.62	(0.57,1]	chr2	106920	286	INTRON	INTRON	PTH2R	ENSG00000144407.10	ENST00000419079.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	4	37	2	1.46969	3.439905	5.41012	0.0586892	1.66635e-5	0.167915	0.00307972
chr11	117205117	117205214	5045013	0	-	0.360825	(0.35,0.378]	chr11	475530	9	UTR3	UTR3:EXON_MRNA	PCSK7	ENSG00000160613.15	ENST00000320934.8:ENST00000676339.1:ENST00000524507.6:ENST00000534529.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	31	2	2.48657	3.4398	4.39303	0.032907	0.0237246	0.145164	0.118716
chr11	130295393	130295493	5053671	0	-	0.36	(0.35,0.378]	chr11	476969	331	INTRON	INTRON	ZBTB44	ENSG00000196323.14	ENST00000357899.9:ENST00000527478.6:ENST00000445008.6:ENST00000525842.5:ENST00000397753.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	31	2	2.48657	3.4398	4.39303	0.032907	0.0237246	0.145164	0.118716
chr12	112092253	112092352	5415261	0	-	0.363636	(0.35,0.378]	chr12	517242	10	INTRON	INTRON	NAA25	ENSG00000111300.10	ENST00000261745.9:ENST00000552527.5:ENST00000549711.5:ENST00000551858.1:ENST00000547133.1:ENST00000548627.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	31	2	2.48657	3.4398	4.39303	0.032907	0.0237246	0.145164	0.118716
chr2	230777705	230777805	1030811	0	+	0.36	(0.35,0.378]	chr2	110012	172	INTRON	INTRON	CAB39	ENSG00000135932.12	ENST00000258418.10:ENST00000409788.7:ENST00000410084.7	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	2.48657	3.4398	4.39303	0.032907	0.0237246	0.145164	0.118716
chr8	56985854	56985953	3955042	0	-	0.353535	(0.35,0.378]	chr8	362767	53	INTRON	INTRON	BPNT2	ENSG00000104331.9	ENST00000262644.9:ENST00000517461.1	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	2.48657	3.4398	4.39303	0.032907	0.0237246	0.145164	0.118716
chr8	102395889	102395989	4012588	0	-	0.36	(0.35,0.378]	chr8	367237	339	INTRON	INTRON	UBR5	ENSG00000104517.13	ENST00000520539.6:ENST00000220959.8:ENST00000521922.5	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	2.48657	3.4398	4.39303	0.032907	0.0237246	0.145164	0.118716
chr1	37877294	37877392	425467	0	-	0.44898	(0.44,0.476]	chr1	51568	12	INTRON	INTRON	INPP5B	ENSG00000204084.13	ENST00000373023.6:ENST00000373024.8:ENST00000458109.6:ENST00000373027.5:ENST00000373026.5	protein_coding	protein_coding	protein_coding	protein_coding	2	40	2	2.27304	3.439755	4.60647	0.0158915	0.0102339	0.109464	0.0850389
chr15	58731389	58731489	6193332	0	-	0.46	(0.44,0.476]	chr15	589988	133	INTRON	INTRON	ADAM10	ENSG00000137845.15	ENST00000260408.8:ENST00000402627.5:ENST00000561288.1:ENST00000559053.1:ENST00000558733.5:ENST00000439637.5:ENST00000497846.5:ENST00000558004.1:ENST00000560608.5:ENST00000561149.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	40	2	2.27304	3.439755	4.60647	0.0158915	0.0102339	0.109464	0.0850389
chr2	183021363	183021462	1285859	0	-	0.393939	(0.378,0.408]	chr2	135424	177	INTRON	INTRON	NCKAP1	ENSG00000061676.15	ENST00000361354.9:ENST00000360982.2	protein_coding	protein_coding	protein_coding	protein_coding	10	185	2	2.40144	3.43969	4.47794	1.67616e-4	1.15421e-5	0.0112123	0.00268546
chr1	54259248	54259348	462284	0	-	0.36	(0.35,0.378]	chr1	55761	7	INTRON	INTRON	SSBP3	ENSG00000157216.16	ENST00000610401.5:ENST00000357475.9:ENST00000371319.8:ENST00000417664.7:ENST00000533946.6:ENST00000326956.12:ENST00000371320.8:ENST00000426150.5:ENST00000533209.5:ENST00000525990.1:ENST00000528787.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	31	2	2.39746	3.4396500000000003	4.48184	0.041314	0.0191702	0.161534	0.108861
chr1	99873408	99873506	170346	0	+	0.367347	(0.35,0.378]	chr1	18372	22	INTRON	INTRON	AGL	ENSG00000162688.17	ENST00000361915.8:ENST00000370165.7:ENST00000370163.7:ENST00000294724.8:ENST00000361302.7:ENST00000370161.6:ENST00000637337.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	31	2	2.39746	3.4396500000000003	4.48184	0.041314	0.0191702	0.161534	0.108861
chr16	15654946	15655046	6306930	0	+	0.37	(0.35,0.378]	chr16	603412	25	INTRON	INTRON	NDE1	ENSG00000072864.16	ENST00000396355.5:ENST00000674888.1:ENST00000675171.1:ENST00000675951.1:ENST00000674900.1:ENST00000674588.1:ENST00000674538.1:ENST00000396354.6:ENST00000675926.1:ENST00000570727.5:ENST00000573203.5:ENST00000674995.1:ENST00000674554.1:ENST00000674581.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	31	2	2.39746	3.4396500000000003	4.48184	0.041314	0.0191702	0.161534	0.108861
chr6	140177579	140177679	2968231	0	+	0.44	(0.408,0.44]	chr6	279015	285	INTRON	INTRON	ENSG00000288714	ENSG00000288714.1	ENST00000683950.1	lncRNA	lncRNA	lncRNA	lncRNA	2	43	2	1.88062	3.439495	4.99837	0.0534548	0.00131369	0.162935	0.0333932
chr17	67198142	67198241	6825351	0	-	0.191919	[0,0.28]	chr17	674518	23	INTRON	INTRON	HELZ	ENSG00000198265.12	ENST00000358691.10:ENST00000579953.5:ENST00000580168.5:ENST00000417253.7:ENST00000580662.5	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:nonsense_mediated_decay:processed_transcript	2	53	2	2.41169	3.439475	4.46726	0.0427997	0.0122872	0.148082	0.0970106
chr15	65531541	65531641	6046641	0	+	0.44	(0.408,0.44]	chr15	575791	1	SS5_PROX	SS5_PROX:INTRON	HACD3	ENSG00000074696.13	ENST00000562901.5:ENST00000261875.10:ENST00000442729.6:ENST00000565299.5:ENST00000568793.5:ENST00000566239.1:ENST00000566074.5:ENST00000566511.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	66	2	3.37162	3.439465	3.50731	0.00208674	8.5918e-4	0.0411801	0.0265787
chr12	24844016	24844115	5296853	0	-	0.454545	(0.44,0.476]	chr12	503847	14	INTRON	INTRON	BCAT1	ENSG00000060982.15	ENST00000261192.12:ENST00000538118.5:ENST00000342945.9:ENST00000539282.5:ENST00000539780.5:ENST00000544418.1:ENST00000612790.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:processed_transcript	2	41	2	2.44514	3.4394549999999997	4.43377	0.0162803	0.0087381	0.101453	0.0845538
chr8	129924111	129924211	4063005	0	-	0.45	(0.44,0.476]	chr8	369828	112	INTRON	INTRON	CYRIB	ENSG00000153310.21	ENST00000694912.1:ENST00000519824.6:ENST00000523288.5:ENST00000519110.5:ENST00000401979.6:ENST00000523509.5:ENST00000522746.5:ENST00000517654.5:ENST00000522250.5:ENST00000519540.5:ENST00000522941.5:ENST00000519142.5:ENST00000518879.5:ENST00000522702.5:ENST00000521223.5:ENST00000520204.5:ENST00000518283.5:ENST00000523993.5:ENST00000520254.5:ENST00000519020.5:ENST00000518167.5:ENST00000517672.5:ENST00000519070.5:ENST00000522361.1:ENST00000518344.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	41	2	2.44514	3.4394549999999997	4.43377	0.0162803	0.0087381	0.101453	0.0845538
chr11	9286521	9286588	4909146	0	-	0.313433	(0.28,0.32]	chr11	460134	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	TMEM41B	ENSG00000166471.11	ENST00000524543.5:ENST00000528080.6:ENST00000299596.8:ENST00000611268.4:ENST00000533867.1:ENST00000527813.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	92	2	1.7781	3.439395	5.10069	0.00932885	0.00610574	0.0856412	0.0676501
chr18	9233246	9233345	6869906	0	+	0.282828	(0.28,0.32]	chr18	680611	109	INTRON	INTRON	ANKRD12	ENSG00000101745.17	ENST00000262126.9:ENST00000540578.6:ENST00000400020.7:ENST00000546007.6:ENST00000359158.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	47	2	2.28998	3.439365	4.58875	0.0230574	0.0166401	0.118056	0.110511
chr1	12590612	12590712	379269	0	-	0.44	(0.408,0.44]	chr1	44543	96	INTRON	INTRON	DHRS3	ENSG00000162496.9	ENST00000616661.5:ENST00000464917.5:ENST00000430996.2:ENST00000482265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	33	2	2.6542	3.439335	4.22447	0.0227514	0.0161655	0.117618	0.109464
chr2	44225791	44225891	765136	0	+	0.43	(0.408,0.44]	chr2	86714	67	INTRON	INTRON	PPM1B	ENSG00000138032.21	ENST00000282412.9:ENST00000378540.8:ENST00000378551.6:ENST00000409432.7:ENST00000345249.8:ENST00000459690.5:ENST00000487286.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	33	2	2.6542	3.439335	4.22447	0.0227514	0.0161655	0.117618	0.109464
chr3	42044011	42044111	1403962	0	+	0.42	(0.408,0.44]	chr3	147497	295	INTRON	INTRON	TRAK1	ENSG00000182606.17	ENST00000487159.5:ENST00000672026.1:ENST00000673621.2	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	2.6542	3.439335	4.22447	0.0227514	0.0161655	0.117618	0.109464
chr5	178135628	178135728	2559223	0	+	0.42	(0.408,0.44]	chr5	244581	2	SS3_PROX	SS3_PROX:SS5_PROX:INTRON	RMND5B	ENSG00000145916.19	ENST00000515098.5:ENST00000507575.5:ENST00000313386.9:ENST00000502814.5:ENST00000512663.5:ENST00000507457.5:ENST00000508647.5:ENST00000542098.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	33	2	2.6542	3.439335	4.22447	0.0227514	0.0161655	0.117618	0.109464
chr5	179702192	179702292	2560718	0	+	0.41	(0.408,0.44]	chr5	244867	3	SS3_PROX	SS3_PROX:INTRON	CANX	ENSG00000127022.16	ENST00000681674.1:ENST00000681712.1:ENST00000681903.1:ENST00000680406.1:ENST00000502296.6:ENST00000504734.5:ENST00000452673.6:ENST00000679719.1:ENST00000679523.1:ENST00000679395.1:ENST00000681504.1:ENST00000679642.1:ENST00000681894.1:ENST00000680504.1:ENST00000681265.1:ENST00000680894.1:ENST00000680812.1:ENST00000680614.1:ENST00000680985.1:ENST00000680837.1:ENST00000680827.1:ENST00000681576.1:ENST00000680984.1:ENST00000680042.1:ENST00000681762.1:ENST00000502498.6:ENST00000681476.1:ENST00000681072.1:ENST00000247461.9:ENST00000513246.6:ENST00000680618.1:ENST00000502673.6:ENST00000680092.1:ENST00000506654.6:ENST00000514032.5:ENST00000681733.1:ENST00000679471.1:ENST00000679527.1:ENST00000680006.1:ENST00000681398.1:ENST00000681431.1:ENST00000680013.1:ENST00000681076.1:ENST00000681168.1:ENST00000509563.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	122	2	2.41003	3.439305	4.46858	0.00211327	4.5816e-6	0.0415897	0.00144313
chr1	37965557	37965656	426277	0	-	0.464646	(0.44,0.476]	chr1	51674	50	INTRON	INTRON	SF3A3	ENSG00000183431.12	ENST00000373019.5	protein_coding	protein_coding	protein_coding	protein_coding	2	40	2	1.85146	3.439245	5.02703	0.0545846	0.00278015	0.182529	0.0469265
chr8	53977326	53977425	3952842	0	-	0.353535	(0.35,0.378]	chr8	362510	65	INTRON	INTRON	TCEA1	ENSG00000187735.15	ENST00000396401.7:ENST00000521604.7:ENST00000521086.6:ENST00000522635.5:ENST00000522397.5:ENST00000640382.1:ENST00000640041.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	52	2	2.15877	3.4391499999999997	4.71953	0.0103314	0.0102036	0.089002	0.0850389
chr17	47148239	47148338	6788966	0	-	0.353535	(0.35,0.378]	chr17	669573	39	INTRON	INTRON	CDC27	ENSG00000004897.12	ENST00000066544.8:ENST00000531206.5:ENST00000533415.5:ENST00000527547.5:ENST00000526866.5:ENST00000525495.6:ENST00000574304.5:ENST00000575830.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	71	2	3.25549	3.439105	3.62272	0.00363602	5.64719e-4	0.0535085	0.021704
chr2	61363046	61363146	1129466	0	-	0.34	(0.32,0.35]	chr2	121448	120	INTRON	INTRON	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000453133.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	62	2	1.9182	3.438955	4.95971	0.0141462	0.00663522	0.103512	0.0703181
chr7	44843951	44844049	3528642	0	-	0.255102	[0,0.28]	chr7	329123	2	INTRON	INTRON	H2AZ2	ENSG00000105968.19	ENST00000222690.10:ENST00000437072.5:ENST00000308153.9:ENST00000350771.7:ENST00000349299.7:ENST00000381124.9:ENST00000521529.5:ENST00000446531.1	protein_coding	protein_coding	protein_coding	protein_coding	2	95	2	2.9385	3.4386900000000002	3.93888	0.0142776	2.29361e-4	0.0963703	0.013345
chr19	18866995	18867090	7033703	0	+	0.431579	(0.408,0.44]	chr19	701087	6	UTR3	UTR3:EXON_MRNA	UPF1	ENSG00000005007.13	ENST00000262803.10:ENST00000599848.5:ENST00000596842.5:ENST00000600689.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	52	2	1.69172	3.43854	5.18536	0.0486032	6.17381e-4	0.153946	0.0223951
chr8	92869222	92869322	3990798	0	-	0.3	(0.28,0.32]	chr8	365358	828	INTRON	INTRON	FLJ46284	ENSG00000248858.7	ENST00000504861.2	lncRNA	lncRNA	lncRNA	lncRNA	2	82	2	3.36855	3.4384550000000003	3.50836	0.00305882	0.00117393	0.0494118	0.0316446
chr9	97268994	97269093	4170419	0	+	0.454545	(0.44,0.476]	chr9	379898	171	INTRON	INTRON	SUGT1P4-STRA6LP	ENSG00000254876.5	ENST00000527128.5:ENST00000375204.2	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	3	53	2	1.94723	3.4384550000000003	4.92968	0.0227424	0.00171443	0.117618	0.0381936
chr3	45083857	45083956	1677861	0	-	0.363636	(0.35,0.378]	chr3	171260	17	UTR3	UTR3:EXON_MRNA	CDCP1	ENSG00000163814.8	ENST00000296129.6	protein_coding	protein_coding	protein_coding	protein_coding	7	163	2	2.37025	3.4382149999999996	4.50618	0.00107566	4.64451e-6	0.0301972	0.00144728
chr2	151477635	151477733	893921	0	+	0.55102	(0.515,0.57]	chr2	99059	27	UTR3	UTR3:EXON_MRNA:INTRON	RIF1	ENSG00000080345.18	ENST00000444746.7:ENST00000243326.9:ENST00000454583.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	154	2	1.89343	3.438175	4.98292	0.00243616	1.66682e-7	0.0456604	1.98942e-4
chr1	21074851	21074951	392606	0	-	0.52	(0.515,0.57]	chr1	46825	12	INTRON	INTRON	EIF4G3	ENSG00000075151.24	ENST00000374935.7:ENST00000602326.6:ENST00000685872.1:ENST00000686579.1:ENST00000688741.1:ENST00000684485.1:ENST00000400422.6:ENST00000634879.2:ENST00000693470.1:ENST00000685814.1:ENST00000356916.7:ENST00000682284.1:ENST00000438975.5:ENST00000411888.5:ENST00000463775.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	27	2	2.56306	3.43816	4.31326	0.0247751	0.0141817	0.131869	0.0959618
chr1	23784483	23784582	44841	0	+	0.565657	(0.515,0.57]	chr1	5454	42	INTRON	INTRON	PITHD1	ENSG00000057757.10	ENST00000246151.9:ENST00000415372.1	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	2.56306	3.43816	4.31326	0.0247751	0.0141817	0.131869	0.0959618
chr1	246008960	246009060	675720	0	-	0.53	(0.515,0.57]	chr1	79713	205	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000391836.3:ENST00000464398.1:ENST00000453676.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	27	2	2.56306	3.43816	4.31326	0.0247751	0.0141817	0.131869	0.0959618
chr16	71786979	71787079	6514256	0	-	0.52	(0.515,0.57]	chr16	631200	120	INTRON	INTRON	AP1G1	ENSG00000166747.13	ENST00000299980.9:ENST00000569748.5:ENST00000393512.7:ENST00000565009.5:ENST00000568327.5:ENST00000450149.6:ENST00000563259.5:ENST00000563104.5:ENST00000569185.5:ENST00000566161.5:ENST00000567583.1:ENST00000565412.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	27	2	2.56306	3.43816	4.31326	0.0247751	0.0141817	0.131869	0.0959618
chr16	89456387	89456487	6543260	0	-	0.55	(0.515,0.57]	chr16	634281	247	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	27	2	2.56306	3.43816	4.31326	0.0247751	0.0141817	0.131869	0.0959618
chr17	56896352	56896452	6798963	0	-	0.54	(0.515,0.57]	chr17	671252	4	SS3_PROX	SS3_PROX:INTRON	TRIM25	ENSG00000121060.19	ENST00000648772.1:ENST00000682766.1:ENST00000316881.9:ENST00000537230.3:ENST00000572021.6:ENST00000570473.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	27	2	2.56306	3.43816	4.31326	0.0247751	0.0141817	0.131869	0.0959618
chr18	12319436	12319536	6874881	0	+	0.52	(0.515,0.57]	chr18	681093	80	INTRON	INTRON	TUBB6	ENSG00000176014.13	ENST00000590693.5:ENST00000590103.5:ENST00000591909.5:ENST00000317702.10:ENST00000417736.2:ENST00000586810.5:ENST00000586653.5:ENST00000590388.5:ENST00000592683.5:ENST00000590967.5:ENST00000591208.1:ENST00000591463.1:ENST00000586691.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	27	2	2.56306	3.43816	4.31326	0.0247751	0.0141817	0.131869	0.0959618
chr5	87377340	87377440	2411906	0	+	0.53	(0.515,0.57]	chr5	232482	3	SS5_PROX	SS5_PROX:INTRON	RASA1	ENSG00000145715.15	ENST00000274376.11:ENST00000515800.6:ENST00000456692.6:ENST00000506290.1:ENST00000512763.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	27	2	2.56306	3.43816	4.31326	0.0247751	0.0141817	0.131869	0.0959618
chr9	37570228	37570328	4251629	0	-	0.52	(0.515,0.57]	chr9	391555	281	INTRON	INTRON	FBXO10	ENSG00000147912.13	ENST00000432825.7:ENST00000276960.7:ENST00000541607.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	27	2	2.56306	3.43816	4.31326	0.0247751	0.0141817	0.131869	0.0959618
chr2	158475300	158475400	897323	0	+	0.4	(0.378,0.408]	chr2	99341	166	INTRON	INTRON	PKP4	ENSG00000144283.23	ENST00000389759.8:ENST00000426248.7:ENST00000389757.7:ENST00000457109.5:ENST00000452162.5:ENST00000411900.5:ENST00000421462.5:ENST00000462335.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	44	2	1.8252	3.438055	5.05091	0.0619563	0.00118558	0.174514	0.031662
chr6	5633216	5633316	2796394	0	+	0.38	(0.378,0.408]	chr6	263693	195	INTRON	INTRON	FARS2	ENSG00000145982.13	ENST00000324331.10:ENST00000648580.1:ENST00000274680.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	44	2	1.8252	3.438055	5.05091	0.0619563	0.00118558	0.174514	0.031662
chr2	108746210	108746310	847685	0	+	0.49	(0.476,0.515]	chr2	94822	1	SS3_PROX	SS3_PROX:INTRON	RANBP2	ENSG00000153201.16	ENST00000283195.11	protein_coding	protein_coding	protein_coding	protein_coding	13	338	2	3.23291	3.438045	3.64318	7.50317e-7	7.25777e-7	5.13356e-4	4.86083e-4
chr1	113080234	113080334	188164	0	+	0.55	(0.515,0.57]	chr1	20854	62	INTRON	INTRON	LRIG2	ENSG00000198799.12	ENST00000361127.6	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	2.46104	3.4380100000000002	4.41498	0.032841	0.0106866	0.145164	0.0861859
chr1	230136824	230136924	334775	0	+	0.53	(0.515,0.57]	chr1	38930	449	INTRON	INTRON	GALNT2	ENSG00000143641.10	ENST00000494106.1:ENST00000366672.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	27	2	2.46104	3.4380100000000002	4.41498	0.032841	0.0106866	0.145164	0.0861859
chr19	50483522	50483621	7093138	0	+	0.545455	(0.515,0.57]	chr19	710934	9	UTR3	UTR3:EXON_MRNA	EMC10	ENSG00000161671.17	ENST00000334976.11	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	2.46104	3.4380100000000002	4.41498	0.032841	0.0106866	0.145164	0.0861859
chr3	141409348	141409448	1524233	0	+	0.54	(0.515,0.57]	chr3	158789	37	INTRON	INTRON	ZBTB38	ENSG00000177311.12	ENST00000509842.5:ENST00000321464.7:ENST00000507722.5:ENST00000636289.1:ENST00000503809.5:ENST00000513258.5:ENST00000509883.5:ENST00000514251.5:ENST00000637056.1:ENST00000510338.5:ENST00000504673.5:ENST00000513570.1	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	2.46104	3.4380100000000002	4.41498	0.032841	0.0106866	0.145164	0.0861859
chr5	173059261	173059359	2548720	0	+	0.520408	(0.515,0.57]	chr5	243317	12	INTRON	INTRON	CREBRF	ENSG00000164463.12	ENST00000296953.6:ENST00000522692.5:ENST00000520420.5:ENST00000520464.1:ENST00000517882.1:ENST00000523161.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	46	2	1.56681	3.4380100000000002	5.30921	0.064862	1.98811e-4	0.179394	0.0122787
chr7	2265458	2265558	3467189	0	-	0.53	(0.515,0.57]	chr7	324206	6	INTRON	INTRON	SNX8	ENSG00000106266.11	ENST00000222990.8:ENST00000479689.1:ENST00000435060.5:ENST00000457286.5:ENST00000435336.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	27	2	2.46104	3.4380100000000002	4.41498	0.032841	0.0106866	0.145164	0.0861859
chr7	128839622	128839722	3409174	0	+	0.52	(0.515,0.57]	chr7	318605	2	SS3_PROX	SS3_PROX:INTRON	FLNC	ENSG00000128591.16	ENST00000325888.13:ENST00000346177.6	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	2.46104	3.4380100000000002	4.41498	0.032841	0.0106866	0.145164	0.0861859
chrX	48955576	48955676	7816053	0	-	0.53	(0.515,0.57]	chrX	796867	109	INTRON	INTRON	OTUD5	ENSG00000068308.15	ENST00000376488.8:ENST00000396743.7:ENST00000455452.5:ENST00000156084.8:ENST00000428668.2:ENST00000484499.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	27	2	2.46104	3.4380100000000002	4.41498	0.032841	0.0106866	0.145164	0.0861859
chrX	118431383	118431483	7707972	0	+	0.53	(0.515,0.57]	chrX	788600	201	INTRON	INTRON	WDR44	ENSG00000131725.14	ENST00000371822.9:ENST00000254029.8:ENST00000371825.7:ENST00000371848.3	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	2.46104	3.4380100000000002	4.41498	0.032841	0.0106866	0.145164	0.0861859
chrX	9526492	9526592	7619269	0	+	0.51	(0.476,0.515]	chrX	779944	243	INTRON	INTRON	TBL1X	ENSG00000101849.18	ENST00000407597.7:ENST00000380961.5:ENST00000424279.6:ENST00000645353.2:ENST00000422314.5	protein_coding	protein_coding	protein_coding	protein_coding	3	48	2	1.96833	3.43797	4.90761	0.0195007	0.00386428	0.119967	0.0542786
chr9	93533628	93533728	4158874	0	+	0.54	(0.515,0.57]	chr9	379180	9	INTRON	INTRON	FAM120A	ENSG00000048828.17	ENST00000277165.11:ENST00000427765.1	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	2.83501	3.4379350000000004	4.04086	0.0197045	0.0117686	0.120063	0.0894475
chr3	10302165	10302262	1613118	0	-	0.515464	(0.515,0.57]	chr3	166582	4	INTRON	INTRON	SEC13	ENSG00000157020.18	ENST00000492602.5:ENST00000350697.8:ENST00000337354.8:ENST00000397109.7:ENST00000479868.6:ENST00000397117.5:ENST00000383801.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	58	2	3.25412	3.43788	3.62164	0.00224554	5.41944e-4	0.0435144	0.0215026
chr11	64123353	64123453	4964203	0	-	0.41	(0.408,0.44]	chr11	467267	1077	INTRON	INTRON	MACROD1	ENSG00000133315.12	ENST00000255681.7:ENST00000675777.1:ENST00000543422.5:ENST00000545464.5:ENST00000542359.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	32	2	2.43988	3.4378400000000005	4.4358	0.0398236	0.00893097	0.143072	0.0849778
chr16	14613401	14613501	6449681	0	-	0.44	(0.408,0.44]	chr16	621343	22	INTRON	INTRON	PARN	ENSG00000140694.17	ENST00000651865.1:ENST00000437198.7:ENST00000651348.1:ENST00000650990.1:ENST00000651760.1:ENST00000652541.1:ENST00000652727.1:ENST00000652066.1:ENST00000651300.1:ENST00000420015.6:ENST00000652051.1:ENST00000341484.11:ENST00000539279.5:ENST00000651049.1:ENST00000650960.1:ENST00000651634.1:ENST00000564113.6:ENST00000652411.1:ENST00000652501.1:ENST00000651027.1:ENST00000651913.1:ENST00000563641.6:ENST00000651241.1:ENST00000538472.5:ENST00000566021.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	32	2	2.43988	3.4378400000000005	4.4358	0.0398236	0.00893097	0.143072	0.0849778
chr2	27471985	27472079	1087633	0	-	0.425532	(0.408,0.44]	chr2	116618	9	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	IFT172	ENSG00000138002.16	ENST00000675690.1:ENST00000260570.8:ENST00000507184.5:ENST00000675410.1:ENST00000674932.1:ENST00000676119.1:ENST00000674824.1:ENST00000674701.1:ENST00000675826.1:ENST00000675963.1:ENST00000675618.1:ENST00000675729.1:ENST00000511842.5:ENST00000359466.10:ENST00000416524.2:ENST00000675728.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	32	2	2.43988	3.4378400000000005	4.4358	0.0398236	0.00893097	0.143072	0.0849778
chr4	2555543	2555643	1912705	0	+	0.44	(0.408,0.44]	chr4	191976	180	INTRON	INTRON	RNF4:FAM193A	ENSG00000063978.16:ENSG00000125386.16	ENST00000508235.1:ENST00000637812.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	32	2	2.43988	3.4378400000000005	4.4358	0.0398236	0.00893097	0.143072	0.0849778
chr6	97170798	97170896	3163628	0	-	0.428571	(0.408,0.44]	chr6	295059	22	INTRON	INTRON	MMS22L	ENSG00000146263.12	ENST00000683635.1:ENST00000275053.8:ENST00000369251.6	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	2.43988	3.4378400000000005	4.4358	0.0398236	0.00893097	0.143072	0.0849778
chr12	121340916	121341014	5437069	0	-	0.244898	[0,0.28]	chr12	519908	32	INTRON	INTRON	ANAPC5	ENSG00000089053.13	ENST00000261819.8:ENST00000541887.5:ENST00000534976.5:ENST00000441917.6:ENST00000539612.5:ENST00000541652.5:ENST00000544442.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	94	2	3.3753	3.43781	3.50032	0.00245166	0.00242466	0.0454587	0.0446188
chr18	1353862	1353962	6941719	0	-	0.41	(0.408,0.44]	chr18	686588	4	SS3_PROX	SS3_PROX:INTRON	LINC00470	ENSG00000132204.14	ENST00000657423.1:ENST00000657618.1:ENST00000584090.5:ENST00000660947.1:ENST00000669242.1:ENST00000660475.1:ENST00000653775.1:ENST00000661931.1:ENST00000412816.7:ENST00000577867.5:ENST00000584492.5:ENST00000667416.1:ENST00000661852.1:ENST00000657919.1:ENST00000661646.1:ENST00000667776.1:ENST00000654559.1:ENST00000661233.1:ENST00000653213.1:ENST00000659094.1:ENST00000660964.1:ENST00000577403.6:ENST00000660358.1:ENST00000669153.1:ENST00000657121.1:ENST00000655957.1:ENST00000659289.1:ENST00000665133.1:ENST00000671558.1:ENST00000666542.1:ENST00000663512.1:ENST00000582862.6:ENST00000578835.5:ENST00000669312.1:ENST00000581430.5:ENST00000581212.1:ENST00000658090.1:ENST00000667225.1	lncRNA	lncRNA	lncRNA	lncRNA	3	48	2	1.6306	3.437805	5.24501	0.0544158	0.00137378	0.182272	0.0336718
chr11	72079326	72079424	4976830	0	-	0.520408	(0.515,0.57]	chr11	470156	22	INTRON	INTRON	NUMA1	ENSG00000137497.19	ENST00000393695.8:ENST00000358965.10:ENST00000351960.10:ENST00000613205.4:ENST00000537217.5:ENST00000540843.5:ENST00000543937.5:ENST00000368959.9:ENST00000541719.5:ENST00000366394.7:ENST00000541641.5:ENST00000537905.5:ENST00000535111.5:ENST00000546131.1:ENST00000543450.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	46	2	1.811	3.437795	5.06459	0.0325989	6.03964e-4	0.133687	0.0223465
chr6	140898087	140898187	3241132	0	-	0.52	(0.515,0.57]	chr6	301069	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ENSG00000234147	ENSG00000234147.3	ENST00000650553.2:ENST00000692940.1:ENST00000683641.1:ENST00000682196.1:ENST00000684320.1:ENST00000683889.1:ENST00000683062.1:ENST00000682608.1:ENST00000455011.2:ENST00000682812.1:ENST00000683340.1:ENST00000683841.1:ENST00000683589.1:ENST00000684268.1:ENST00000683480.1:ENST00000684120.1	lncRNA	lncRNA	lncRNA	lncRNA	3	46	2	1.811	3.437795	5.06459	0.0325989	6.03964e-4	0.133687	0.0223465
chr22	21598356	21598456	7482011	0	+	0.31	(0.28,0.32]	chr22	763238	50	INTRON	INTRON	UBE2L3	ENSG00000185651.16	ENST00000458578.6:ENST00000545681.2:ENST00000696046.1:ENST00000342192.9:ENST00000496722.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	56	2	1.94591	3.4375999999999998	4.92929	0.0228482	0.0098607	0.125519	0.0838128
chr16	24214557	24214657	6327572	0	+	0.38	(0.378,0.408]	chr16	605808	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1	protein_coding	protein_coding	protein_coding	protein_coding	2	42	2	2.46345	3.43757	4.41169	0.0199606	0.00827342	0.109608	0.0813266
chr5	139353681	139353781	2499901	0	+	0.36	(0.35,0.378]	chr5	238989	99	INTRON	INTRON	PAIP2	ENSG00000120727.13	ENST00000507755.5:ENST00000265192.9:ENST00000510409.1:ENST00000511381.1:ENST00000511706.5:ENST00000507415.1:ENST00000394795.6:ENST00000510080.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	42	2	2.23043	3.4375	4.64457	0.0187487	0.012652	0.117523	0.0926667
chr19	5029976	5030075	7004026	0	+	0.606061	(0.57,1]	chr19	694806	133	INTRON	INTRON	KDM4B	ENSG00000127663.15	ENST00000159111.9:ENST00000611640.4:ENST00000588337.5:ENST00000381759.8:ENST00000536461.5	protein_coding	protein_coding	protein_coding	protein_coding	2	26	2	2.38391	3.43749	4.49107	0.0104374	0.00220544	0.0902296	0.0417893
chr6	30291973	30292072	3076642	0	-	0.434343	(0.408,0.44]	chr6	286134	54	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	HCG18	ENSG00000231074.10	ENST00000665953.1:ENST00000670397.1:ENST00000659132.1:ENST00000659836.1:ENST00000669374.1:ENST00000659563.1:ENST00000653541.1:ENST00000670071.1:ENST00000666294.1:ENST00000657247.1:ENST00000654996.1:ENST00000653301.1:ENST00000657595.1:ENST00000658695.1:ENST00000664861.1:ENST00000668974.1:ENST00000654915.1:ENST00000660593.1:ENST00000687430.1:ENST00000656629.1:ENST00000602550.5:ENST00000687815.1:ENST00000449544.6:ENST00000426882.6:ENST00000438412.6:ENST00000602698.6:ENST00000454129.5:ENST00000444126.5:ENST00000602290.2:ENST00000412685.8:ENST00000602861.6:ENST00000454269.6:ENST00000686575.1:ENST00000687471.1:ENST00000691282.1	lncRNA	lncRNA	lncRNA	lncRNA	1	35	2	2.89795	3.4373699999999996	3.97679	0.0299485	0.0110735	0.142135	0.0873897
chr2	61274164	61274264	1128534	0	-	0.49	(0.476,0.515]	chr2	121280	76	INTRON	INTRON	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000472706.5:ENST00000453734.1:ENST00000484179.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	119	2	2.6224	3.437315	4.25223	5.5634e-4	3.12467e-5	0.0214853	0.00467101
chr4	153514779	153514879	2067736	0	+	0.44	(0.408,0.44]	chr4	204567	405	INTRON	INTRON	TMEM131L	ENSG00000121210.16	ENST00000409663.7:ENST00000445960.5:ENST00000409959.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	40	2	2.27464	3.437215	4.59979	0.0158016	0.0109537	0.109464	0.0873034
chr7	127733997	127734097	3403230	0	+	0.44	(0.408,0.44]	chr7	318134	122	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000468166.5:ENST00000465900.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	40	2	2.27464	3.437215	4.59979	0.0158016	0.0109537	0.109464	0.0873034
chr18	2783665	2783763	6866203	0	+	0.489796	(0.476,0.515]	chr18	680190	10	EXON_MRNA	EXON_MRNA:INTRON	SMCHD1	ENSG00000101596.17	ENST00000320876.11:ENST00000688342.1:ENST00000577880.5:ENST00000584897.5:ENST00000686763.1:ENST00000686864.1:ENST00000688708.1:ENST00000645355.1:ENST00000688964.1:ENST00000685656.1:ENST00000689034.1:ENST00000642953.1:ENST00000689800.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	40	2	2.26034	3.4371799999999997	4.61402	0.0166235	0.00947755	0.110511	0.0817766
chr1	235500595	235500693	664424	0	-	0.336735	(0.32,0.35]	chr1	78647	19	INTRON	INTRON	B3GALNT2	ENSG00000162885.14	ENST00000366600.8:ENST00000675193.1:ENST00000676288.1:ENST00000612859.4:ENST00000313984.3:ENST00000494378.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	53	2	1.97654	3.43711	4.89768	0.0199113	0.00793135	0.120668	0.076155
chr6	34639000	34639100	3085640	0	-	0.34	(0.32,0.35]	chr6	288679	317	INTRON	INTRON	ILRUN	ENSG00000196821.10	ENST00000374026.7:ENST00000374023.8:ENST00000374021.1	protein_coding	protein_coding	protein_coding	protein_coding	3	53	2	1.97654	3.43711	4.89768	0.0199113	0.00793135	0.120668	0.076155
chr7	105846296	105846396	3607674	0	-	0.36	(0.35,0.378]	chr7	336411	572	INTRON	INTRON	ATXN7L1	ENSG00000146776.15	ENST00000419735.8:ENST00000318724.8:ENST00000478915.1:ENST00000481880.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	42	2	1.82887	3.436995	5.04512	0.0584878	0.00393262	0.189395	0.0548259
chr10	125065919	125066019	4713388	0	-	0.53	(0.515,0.57]	chr10	434897	264	INTRON	INTRON	CTBP2	ENSG00000175029.17	ENST00000337195.9:ENST00000411419.6:ENST00000494626.6:ENST00000531469.5:ENST00000460976.5:ENST00000476817.1:ENST00000530884.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	109	2	2.91091	3.436865	3.96282	1.18366e-4	7.05073e-5	0.00985953	0.00694412
chr1	21760380	21760480	396642	0	-	0.43	(0.408,0.44]	chr1	47345	22	INTRON	INTRON	USP48	ENSG00000090686.16	ENST00000400301.5:ENST00000308271.14:ENST00000529637.5:ENST00000421625.6:ENST00000527823.5:ENST00000532737.1:ENST00000489108.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	57	2	2.04842	3.4368600000000002	4.8253	0.00797555	0.0056738	0.0798772	0.0653997
chr7	135420656	135420756	3648065	0	-	0.33	(0.32,0.35]	chr7	339173	50	INTRON	INTRON	CNOT4	ENSG00000080802.20	ENST00000541284.6:ENST00000451834.5:ENST00000423368.6:ENST00000361528.8:ENST00000414802.5:ENST00000428680.6:ENST00000315544.6	protein_coding	protein_coding	protein_coding	protein_coding	4	60	2	1.63843	3.436815	5.2352	0.0360919	0.0028268	0.152563	0.0472361
chr1	165832725	165832824	243800	0	+	0.494949	(0.476,0.515]	chr1	29139	44	INTRON	INTRON	UCK2	ENSG00000143179.16	ENST00000367879.9:ENST00000642653.1	protein_coding	protein_coding	protein_coding	protein_coding	2	40	2	1.8388	3.43673	5.03466	0.0564473	0.00252065	0.184423	0.0446195
chr3	9377518	9377618	1358778	0	+	0.51	(0.476,0.515]	chr3	142622	3	SS3_PROX	SS3_PROX:INTRON	THUMPD3	ENSG00000134077.16	ENST00000345094.7:ENST00000452837.7:ENST00000515662.6:ENST00000441127.5:ENST00000416603.1:ENST00000461636.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	40	2	1.8388	3.43673	5.03466	0.0564473	0.00252065	0.184423	0.0446195
chr22	19143194	19143294	7552159	0	-	0.43	(0.408,0.44]	chr22	771952	3	SS3_PROX	SS3_PROX:INTRON	ESS2	ENSG00000100056.12	ENST00000252137.11:ENST00000434568.5:ENST00000472073.1:ENST00000469466.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	43	2	1.74775	3.436715	5.12568	0.0735403	7.90919e-4	0.190238	0.0258324
chr12	53039882	53039962	5141772	0	+	0.4125	(0.408,0.44]	chr12	485054	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	EIF4B	ENSG00000063046.18	ENST00000262056.14:ENST00000420463.7:ENST00000416762.7:ENST00000549592.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	40	2	1.85305	3.4366649999999996	5.02028	0.0543543	0.00303216	0.182243	0.0493883
chr1	21125213	21125313	393113	0	-	0.29	(0.28,0.32]	chr1	46836	122	INTRON	INTRON	EIF4G3	ENSG00000075151.24	ENST00000374935.7:ENST00000602326.6:ENST00000685872.1:ENST00000686579.1:ENST00000688741.1:ENST00000400422.6:ENST00000634879.2:ENST00000693470.1:ENST00000685814.1:ENST00000356916.7:ENST00000682284.1:ENST00000438975.5:ENST00000411888.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	34	2	2.53522	3.436435	4.33765	0.039714	0.0310424	0.143457	0.143072
chr1	110402750	110402845	521944	0	-	0.305263	(0.28,0.32]	chr1	61321	8	INTRON	INTRON	LAMTOR5	ENSG00000134248.14	ENST00000464240.1:ENST00000474861.6:ENST00000483260.5:ENST00000256644.8:ENST00000602318.6:ENST00000602858.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	34	2	2.53522	3.436435	4.33765	0.039714	0.0310424	0.143457	0.143072
chr1	220045543	220045643	639184	0	-	0.31	(0.28,0.32]	chr1	75333	49	INTRON	INTRON	EPRS1	ENSG00000136628.18	ENST00000366923.8:ENST00000609181.5:ENST00000477030.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	34	2	2.53522	3.436435	4.33765	0.039714	0.0310424	0.143457	0.143072
chr10	929228	929328	4542563	0	-	0.32	(0.28,0.32]	chr10	419310	44	INTRON	INTRON	LARP4B	ENSG00000107929.16	ENST00000316157.8:ENST00000690516.1:ENST00000476529.5:ENST00000406525.6:ENST00000481118.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	34	2	2.53522	3.436435	4.33765	0.039714	0.0310424	0.143457	0.143072
chr12	79925101	79925201	5376435	0	-	0.32	(0.28,0.32]	chr12	512797	113	INTRON	INTRON	PPP1R12A	ENSG00000058272.19	ENST00000261207.9:ENST00000450142.7:ENST00000437004.6:ENST00000550107.5:ENST00000547330.5:ENST00000550510.5	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	2.53522	3.436435	4.33765	0.039714	0.0310424	0.143457	0.143072
chr19	21459371	21459470	7158798	0	-	0.292929	(0.28,0.32]	chr19	723695	24	INTRON	INTRON	ENSG00000268119	ENSG00000268119.7	ENST00000596705.5:ENST00000597444.6:ENST00000594557.1:ENST00000599993.7:ENST00000600469.7:ENST00000656526.1:ENST00000663704.1:ENST00000593653.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	1	34	2	2.53522	3.436435	4.33765	0.039714	0.0310424	0.143457	0.143072
chr5	38957351	38957451	2604447	0	-	0.29	(0.28,0.32]	chr5	247776	3	SS5_PROX	SS5_PROX:INTRON	RICTOR	ENSG00000164327.13	ENST00000357387.8:ENST00000511516.5:ENST00000296782.9:ENST00000503698.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	34	2	2.53522	3.436435	4.33765	0.039714	0.0310424	0.143457	0.143072
chr7	7191290	7191390	3274677	0	+	0.31	(0.28,0.32]	chr7	304569	81	INTRON	INTRON	C1GALT1	ENSG00000106392.11	ENST00000429911.5:ENST00000436587.7:ENST00000467716.1:ENST00000476068.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	34	2	2.53522	3.436435	4.33765	0.039714	0.0310424	0.143457	0.143072
chr7	131352658	131352758	3416690	0	+	0.3	(0.28,0.32]	chr7	319187	243	INTRON	INTRON	MKLN1	ENSG00000128585.18	ENST00000421797.6:ENST00000416992.6:ENST00000429546.5:ENST00000446815.5:ENST00000494286.5:ENST00000352689.11:ENST00000494785.5:ENST00000458153.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	34	2	2.53522	3.436435	4.33765	0.039714	0.0310424	0.143457	0.143072
chr4	139319376	139319476	2049870	0	+	0.38	(0.378,0.408]	chr4	203286	168	INTRON	INTRON	NAA15	ENSG00000164134.13	ENST00000296543.10:ENST00000398947.1:ENST00000482087.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	68	2	3.39872	3.436245	3.47377	0.0019852	0.00103087	0.0404516	0.0294094
chr19	21041266	21041365	7039322	0	+	0.424242	(0.408,0.44]	chr19	701855	46	INTRON	INTRON	ZNF430	ENSG00000118620.13	ENST00000599548.5:ENST00000594110.5:ENST00000261560.10	protein_coding	protein_coding	protein_coding	protein_coding	2	66	2	3.41144	3.4362399999999997	3.46104	0.00178336	0.00105552	0.0379201	0.0299229
chr3	196501272	196501372	1899998	0	-	0.32	(0.28,0.32]	chr3	190261	122	INTRON	INTRON	RNF168	ENSG00000163961.4	ENST00000318037.3:ENST00000437070.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	113	2	2.53648	3.4361800000000002	4.33588	0.00925866	2.09704e-5	0.0817766	0.00354362
chr10	94564362	94564460	4499807	0	+	0.336735	(0.32,0.35]	chr10	414246	11	INTRON	INTRON	HELLS	ENSG00000119969.15	ENST00000239026.10:ENST00000371332.8:ENST00000348459.10:ENST00000419900.5:ENST00000394036.5:ENST00000394045.5:ENST00000462057.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	35	2	2.23182	3.43614	4.64046	0.068598	0.00724767	0.184298	0.0756327
chr16	30701278	30701378	6338668	0	+	0.33	(0.32,0.35]	chr16	607722	4	SS5_PROX	SS5_PROX:INTRON	SRCAP	ENSG00000080603.17	ENST00000411466.6:ENST00000262518.9	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	2.23182	3.43614	4.64046	0.068598	0.00724767	0.184298	0.0756327
chr17	1454181	1454280	6699951	0	-	0.333333	(0.32,0.35]	chr17	655571	167	INTRON	INTRON	CRK	ENSG00000167193.8	ENST00000398970.5:ENST00000300574.3:ENST00000574295.1:ENST00000572145.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	35	2	2.23182	3.43614	4.64046	0.068598	0.00724767	0.184298	0.0756327
chr19	52546121	52546220	7095444	0	+	0.343434	(0.32,0.35]	chr19	711358	24	INTRON	INTRON	ZNF808	ENSG00000198482.14	ENST00000487863.5:ENST00000465448.5:ENST00000359798.9:ENST00000486474.5:ENST00000461779.5:ENST00000461321.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	35	2	2.23182	3.43614	4.64046	0.068598	0.00724767	0.184298	0.0756327
chr4	17813821	17813910	1927082	0	+	0.325843	(0.32,0.35]	chr4	193717	3	INTRON	INTRON	NCAPG	ENSG00000109805.10	ENST00000251496.7:ENST00000514176.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	35	2	2.23182	3.43614	4.64046	0.068598	0.00724767	0.184298	0.0756327
chr6	17909863	17909963	3067774	0	-	0.33	(0.32,0.35]	chr6	285100	113	INTRON	INTRON	KIF13A	ENSG00000137177.20	ENST00000378814.9:ENST00000259711.11:ENST00000378826.6:ENST00000378843.6:ENST00000636847.1:ENST00000507576.1:ENST00000505588.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	35	2	2.23182	3.43614	4.64046	0.068598	0.00724767	0.184298	0.0756327
chr17	32362413	32362490	6598108	0	+	0.441558	(0.44,0.476]	chr17	641914	1	SS3_PROX	SS3_PROX:INTRON	ZNF207	ENSG00000010244.19	ENST00000321233.10:ENST00000394673.6:ENST00000394670.9:ENST00000342555.10:ENST00000577908.5:ENST00000394679.9:ENST00000581531.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	30	2	2.74372	3.4360749999999998	4.12843	0.0337192	0.0153007	0.134145	0.108569
chr6	17645173	17645271	3065582	0	-	0.44898	(0.44,0.476]	chr6	284800	48	INTRON	INTRON	NUP153	ENSG00000124789.12	ENST00000613258.4:ENST00000537253.5:ENST00000262077.3	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	2.74372	3.4360749999999998	4.12843	0.0337192	0.0153007	0.134145	0.108569
chr6	163522384	163522484	3032789	0	+	0.46	(0.44,0.476]	chr6	282586	431	INTRON	INTRON	QKI	ENSG00000112531.17	ENST00000361758.8:ENST00000453779.6:ENST00000275262.11:ENST00000392127.6:ENST00000361752.8:ENST00000361195.6:ENST00000424802.7:ENST00000545607.5:ENST00000544436.5:ENST00000537041.5:ENST00000545346.1:ENST00000544823.5:ENST00000537883.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	30	2	2.74372	3.4360749999999998	4.12843	0.0337192	0.0153007	0.134145	0.108569
chr7	140033338	140033437	3658947	0	-	0.444444	(0.44,0.476]	chr7	339580	43	INTRON	INTRON	PARP12	ENSG00000059378.13	ENST00000263549.8:ENST00000473341.5:ENST00000488726.5:ENST00000489809.5:ENST00000491598.5:ENST00000466597.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	30	2	2.74372	3.4360749999999998	4.12843	0.0337192	0.0153007	0.134145	0.108569
chr13	25313751	25313851	5457296	0	+	0.23	[0,0.28]	chr13	522903	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	NUP58	ENSG00000139496.17	ENST00000481980.2:ENST00000490231.6:ENST00000695571.1:ENST00000477876.2:ENST00000695572.1:ENST00000463407.6:ENST00000695573.1:ENST00000381736.8:ENST00000695583.1:ENST00000466694.6:ENST00000381718.8:ENST00000695575.1:ENST00000695574.1:ENST00000495460.2:ENST00000381747.7:ENST00000695576.1:ENST00000394327.2:ENST00000695577.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	54	2	2.48813	3.436	4.38387	0.0501911	0.00953591	0.156383	0.0863913
chr20	41578638	41578738	7344147	0	-	0.36	(0.35,0.378]	chr20	748566	141	INTRON	INTRON	CHD6	ENSG00000124177.16	ENST00000373233.8:ENST00000373222.3:ENST00000482596.1:ENST00000440647.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	34	2	2.47065	3.435965	4.40128	0.0386172	0.0120289	0.142656	0.0962115
chr3	185591658	185591757	1585325	0	+	0.373737	(0.35,0.378]	chr3	164123	11	INTRON	INTRON	SENP2	ENSG00000163904.13	ENST00000430355.5:ENST00000465201.5:ENST00000453532.5:ENST00000296257.10:ENST00000413407.5:ENST00000439684.5:ENST00000458551.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	34	2	2.47065	3.435965	4.40128	0.0386172	0.0120289	0.142656	0.0962115
chr7	148808670	148808770	3669981	0	-	0.37	(0.35,0.378]	chr7	340540	2	SS5_PROX	SS5_PROX:INTRON	EZH2	ENSG00000106462.12	ENST00000683292.1:ENST00000320356.7:ENST00000492143.5:ENST00000478654.5:ENST00000350995.6:ENST00000460911.5:ENST00000684400.1:ENST00000683744.1:ENST00000684510.1:ENST00000682317.1:ENST00000683293.1:ENST00000682263.1:ENST00000684300.1:ENST00000476773.5:ENST00000483967.5:ENST00000684436.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	34	2	2.47065	3.435965	4.40128	0.0386172	0.0120289	0.142656	0.0962115
chr22	20948910	20949010	7480833	0	+	0.36	(0.35,0.378]	chr22	763096	143	INTRON	INTRON	CRKL	ENSG00000099942.13	ENST00000354336.8:ENST00000411769.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	71	2	3.17244	3.43586	3.69928	0.00487788	3.94786e-4	0.0607461	0.0178567
chr4	122950624	122950721	2035913	0	+	0.515464	(0.515,0.57]	chr4	202340	28	INTRON	INTRON	SPATA5	ENSG00000145375.9	ENST00000675612.1:ENST00000274008.5:ENST00000674886.1:ENST00000422835.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	36	2	2.1885	3.4357999999999995	4.6831	0.0202537	0.00471288	0.121364	0.0600108
chr10	75107303	75107397	4653332	0	-	0.43617	(0.408,0.44]	chr10	428555	11	INTRON	INTRON	DUSP13	ENSG00000079393.21	ENST00000491677.6:ENST00000372702.7:ENST00000308475.10:ENST00000479884.6:ENST00000607131.5:ENST00000394707.7:ENST00000494588.2:ENST00000372700.7:ENST00000607487.5:ENST00000607009.1:ENST00000473072.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	44	2	2.16746	3.4357800000000003	4.7041	0.024436	0.00381677	0.12011	0.0562562
chr15	84805259	84805357	6088901	0	+	0.418367	(0.408,0.44]	chr15	579491	30	UTR3	UTR3:EXON_MRNA	ZNF592	ENSG00000166716.10	ENST00000560079.7:ENST00000299927.4	protein_coding	protein_coding	protein_coding	protein_coding	2	44	2	2.16746	3.4357800000000003	4.7041	0.024436	0.00381677	0.12011	0.0562562
chr2	158480398	158480498	897374	0	+	0.43	(0.408,0.44]	chr2	99341	217	INTRON	INTRON	PKP4	ENSG00000144283.23	ENST00000389759.8:ENST00000426248.7:ENST00000389757.7:ENST00000457109.5:ENST00000452162.5:ENST00000411900.5:ENST00000421462.5:ENST00000462335.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	44	2	2.16746	3.4357800000000003	4.7041	0.024436	0.00381677	0.12011	0.0562562
chr1	1556359	1556459	360137	0	-	0.53	(0.515,0.57]	chr1	41847	100	INTRON	INTRON	SSU72	ENSG00000160075.12	ENST00000291386.4:ENST00000378725.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	36	2	2.03361	3.435625	4.83764	0.0325854	0.00279527	0.145164	0.0469265
chr1	211315900	211315997	306282	0	+	0.309278	(0.28,0.32]	chr1	35318	23	UTR3	UTR3:EXON_MRNA	RCOR3	ENSG00000117625.14	ENST00000419091.7:ENST00000367005.8	protein_coding	protein_coding	protein_coding	protein_coding	2	46	2	2.13651	3.435625	4.73474	0.0265696	0.0162835	0.134088	0.101453
chr10	101390278	101390378	4510179	0	+	0.32	(0.28,0.32]	chr10	415398	353	INTRON	INTRON	BTRC	ENSG00000166167.18	ENST00000393441.8:ENST00000475200.5:ENST00000408038.6:ENST00000370187.8:ENST00000465182.1:ENST00000370183.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	46	2	2.13651	3.435625	4.73474	0.0265696	0.0162835	0.134088	0.101453
chr17	51259427	51259520	6797866	0	-	0.55914	(0.515,0.57]	chr17	671130	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MBTD1	ENSG00000011258.16	ENST00000586178.6:ENST00000405860.7:ENST00000591270.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	36	2	2.03361	3.435625	4.83764	0.0325854	0.00279527	0.145164	0.0469265
chr2	167864447	167864547	1258445	0	-	0.57	(0.515,0.57]	chr2	133328	12	INTRON	INTRON	B3GALT1-AS1	ENSG00000235335.3	ENST00000430546.2:ENST00000657553.1:ENST00000670221.1:ENST00000436982.2	lncRNA	lncRNA	lncRNA	lncRNA	2	36	2	2.03361	3.435625	4.83764	0.0325854	0.00279527	0.145164	0.0469265
chr7	131096172	131096272	3642561	0	-	0.29	(0.28,0.32]	chr7	338763	78	INTRON	INTRON	LINC-PINT	ENSG00000231721.7	ENST00000647388.1:ENST00000423414.5:ENST00000433079.5:ENST00000642156.1:ENST00000646429.1:ENST00000451786.5:ENST00000645248.1:ENST00000642602.1:ENST00000644804.1:ENST00000647288.1:ENST00000643135.1:ENST00000643855.1:ENST00000643874.1:ENST00000644188.1:ENST00000431189.1:ENST00000642483.1:ENST00000429901.2	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	2	46	2	2.13651	3.435625	4.73474	0.0265696	0.0162835	0.134088	0.101453
chr9	83673026	83673126	4272728	0	-	0.52	(0.515,0.57]	chr9	392953	33	INTRON	INTRON	UBQLN1	ENSG00000135018.14	ENST00000376395.9:ENST00000533705.5:ENST00000257468.11	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	36	2	2.03361	3.435625	4.83764	0.0325854	0.00279527	0.145164	0.0469265
chr1	243309075	243309175	345406	0	+	0.4	(0.378,0.408]	chr1	40242	5	INTRON	INTRON	SDCCAG8	ENSG00000054282.16	ENST00000366541.8:ENST00000435549.1:ENST00000463012.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	30	2	2.45932	3.435505	4.41169	0.0346754	0.0199606	0.148144	0.109608
chr16	18800698	18800798	6456787	0	-	0.39	(0.378,0.408]	chr16	622566	1	SS5_PROX	SS5_PROX:INTRON	ARL6IP1	ENSG00000170540.15	ENST00000304414.12:ENST00000563861.5:ENST00000546206.6:ENST00000562819.5:ENST00000562234.2:ENST00000569976.5:ENST00000567969.1:ENST00000566391.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	30	2	2.45932	3.435505	4.41169	0.0346754	0.0199606	0.148144	0.109608
chr16	84989631	84989717	6533950	0	-	0.406977	(0.378,0.408]	chr16	633137	4	INTRON	INTRON	ZDHHC7	ENSG00000153786.13	ENST00000313732.9:ENST00000344861.9:ENST00000564466.5:ENST00000569488.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	30	2	2.45932	3.435505	4.41169	0.0346754	0.0199606	0.148144	0.109608
chr20	32396816	32396916	7256211	0	+	0.38	(0.378,0.408]	chr20	737076	244	INTRON	INTRON	ASXL1	ENSG00000171456.21	ENST00000651418.1:ENST00000375687.10:ENST00000613218.4:ENST00000644587.1:ENST00000620121.4:ENST00000646985.1:ENST00000643168.1:ENST00000306058.9:ENST00000645688.1:ENST00000470145.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	30	2	2.45932	3.435505	4.41169	0.0346754	0.0199606	0.148144	0.109608
chr20	35879097	35879197	7263971	0	+	0.38	(0.378,0.408]	chr20	738142	69	INTRON	INTRON	PHF20	ENSG00000025293.17	ENST00000374012.8:ENST00000374000.8:ENST00000339089.10:ENST00000481202.5:ENST00000495338.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	30	2	2.45932	3.435505	4.41169	0.0346754	0.0199606	0.148144	0.109608
chr9	92092731	92092830	4286226	0	-	0.40404	(0.378,0.408]	chr9	394050	114	INTRON	INTRON	SPTLC1	ENSG00000090054.16	ENST00000689261.1:ENST00000690095.1:ENST00000646534.1:ENST00000262554.7:ENST00000687427.1:ENST00000690139.1:ENST00000687972.1:ENST00000689401.1:ENST00000686600.1:ENST00000686799.1:ENST00000644140.1:ENST00000692458.1:ENST00000687817.1:ENST00000693147.1:ENST00000482632.6:ENST00000689423.1:ENST00000337841.4:ENST00000477888.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	30	2	2.45932	3.435505	4.41169	0.0346754	0.0199606	0.148144	0.109608
chrX	121225523	121225623	7715445	0	+	0.38	(0.378,0.408]	chrX	789390	393	INTRON	INTRON	ENSG00000286163	ENSG00000286163.1	ENST00000651788.1	lncRNA	lncRNA	lncRNA	lncRNA	1	30	2	2.45932	3.435505	4.41169	0.0346754	0.0199606	0.148144	0.109608
chr1	77744623	77744722	493996	0	-	0.474747	(0.44,0.476]	chr1	58455	25	INTRON	INTRON	USP33	ENSG00000077254.14	ENST00000370794.7:ENST00000370793.5:ENST00000357428.5:ENST00000370792.7:ENST00000524536.5:ENST00000525113.5:ENST00000528150.1:ENST00000530709.5:ENST00000524778.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	50	2	2.26452	3.435495	4.60647	0.0102339	0.00654074	0.0850389	0.0735539
chr1	233614826	233614926	338540	0	+	0.54	(0.515,0.57]	chr1	39405	3	SS5_PROX	SS5_PROX:INTRON	KCNK1	ENSG00000135750.15	ENST00000366621.8	protein_coding	protein_coding	protein_coding	protein_coding	2	37	2	2.45585	3.435415	4.41498	0.0106866	0.00797827	0.0861859	0.0798772
chr15	73565254	73565354	6220491	0	-	0.52	(0.515,0.57]	chr15	593882	16	INTRON	INTRON	NPTN	ENSG00000156642.17	ENST00000351217.10:ENST00000345330.9:ENST00000565325.5:ENST00000562924.5:ENST00000563691.5	protein_coding	protein_coding	protein_coding	protein_coding	2	37	2	2.45585	3.435415	4.41498	0.0106866	0.00797827	0.0861859	0.0798772
chr10	28574411	28574510	4414218	0	+	0.535354	(0.515,0.57]	chr10	407148	360	INTRON	INTRON	WAC	ENSG00000095787.24	ENST00000680735.1:ENST00000375664.8:ENST00000428935.6:ENST00000651598.1:ENST00000628285.3:ENST00000681112.1:ENST00000679570.1:ENST00000375646.5:ENST00000354911.9:ENST00000347934.8:ENST00000420266.6:ENST00000651885.1:ENST00000651441.1:ENST00000679398.1:ENST00000424454.5:ENST00000442148.6:ENST00000448193.5:ENST00000414108.6:ENST00000679428.1:ENST00000439676.5:ENST00000345541.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	60	2	2.83501	3.435315	4.03562	0.0117686	4.64806e-5	0.0894475	0.00555027
chr5	69370459	69370534	2380908	0	+	0.52	(0.515,0.57]	chr5	229346	2	SS5_PROX	SS5_PROX:INTRON	RAD17	ENSG00000152942.19	ENST00000514066.6:ENST00000361732.6:ENST00000507927.5:ENST00000509734.5:ENST00000354868.10:ENST00000511349.1:ENST00000521422.5:ENST00000504177.5:ENST00000354312.7:ENST00000345306.10:ENST00000616683.4:ENST00000512785.5:ENST00000506564.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	38	2	1.9459	3.435315	4.92473	0.0429089	0.00108255	0.148082	0.0300133
chr8	53971261	53971360	3952781	0	-	0.444444	(0.44,0.476]	chr8	362510	4	INTRON	INTRON	TCEA1	ENSG00000187735.15	ENST00000396401.7:ENST00000521604.7:ENST00000521086.6:ENST00000522635.5:ENST00000522397.5:ENST00000640382.1:ENST00000640041.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	51	2	2.34775	3.435225	4.5227	0.0128818	0.00466011	0.0926667	0.0629753
chr1	182840235	182840335	272981	0	+	0.4	(0.378,0.408]	chr1	31856	3	SS5_PROX	SS5_PROX:INTRON	DHX9	ENSG00000135829.17	ENST00000367549.4:ENST00000483416.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	152	2	2.83746	3.4352	4.03294	1.44325e-4	6.52685e-5	0.0109799	0.00669119
chr21	22210081	22210162	7384468	0	+	0.567901	(0.515,0.57]	chr21	752718	3	EXON_LNCRNA	EXON_LNCRNA	ENSG00000226043	ENSG00000226043.2	ENST00000667099.1:ENST00000654607.1:ENST00000444130.1	lncRNA	lncRNA	lncRNA	lncRNA	10	227	2	3.08847	3.435	3.78153	7.91252e-6	1.69454e-7	0.00212728	1.88633e-4
chr19	5663147	5663241	7005716	0	+	0.468085	(0.44,0.476]	chr19	695024	10	INTRON	INTRON	SAFB	ENSG00000160633.13	ENST00000589863.5:ENST00000588852.2:ENST00000292123.9:ENST00000592224.5:ENST00000454510.5:ENST00000589006.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	32	2	2.5364	3.4349299999999996	4.33346	0.0309324	0.0120349	0.13151	0.0962115
chr5	180237715	180237814	2782482	0	-	0.454545	(0.44,0.476]	chr5	262674	13	EXON_MRNA	EXON_MRNA:INTRON	MAPK9	ENSG00000050748.18	ENST00000452135.7:ENST00000343111.10:ENST00000455781.5:ENST00000393360.7:ENST00000347470.8:ENST00000520212.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	32	2	2.5364	3.4349299999999996	4.33346	0.0309324	0.0120349	0.13151	0.0962115
chr9	72170952	72171052	4141481	0	+	0.47	(0.44,0.476]	chr9	377412	209	INTRON	INTRON	GDA	ENSG00000119125.17	ENST00000545168.5:ENST00000238018.8:ENST00000358399.8:ENST00000376986.5:ENST00000475764.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	32	2	2.5364	3.4349299999999996	4.33346	0.0309324	0.0120349	0.13151	0.0962115
chr10	125058829	125058928	4713317	0	-	0.494949	(0.476,0.515]	chr10	434897	193	INTRON	INTRON	CTBP2	ENSG00000175029.17	ENST00000337195.9:ENST00000411419.6:ENST00000494626.6:ENST00000531469.5:ENST00000460976.5:ENST00000476817.1:ENST00000530884.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	66	2	3.29939	3.434895	3.5704	0.00211868	8.75056e-4	0.0425644	0.0270926
chr4	1220863	1220962	2094715	0	-	0.454545	(0.44,0.476]	chr4	207127	43	INTRON	INTRON	CTBP1	ENSG00000159692.16	ENST00000382952.8:ENST00000290921.10:ENST00000504092.5:ENST00000510739.1:ENST00000505826.5:ENST00000514669.5:ENST00000506180.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	59	2	1.5191	3.43471	5.35032	0.0526241	3.02713e-4	0.160983	0.0155054
chr11	47423373	47423473	4949455	0	-	0.53	(0.515,0.57]	chr11	464107	4	SS3_PROX	SS3_PROX:INTRON	PSMC3	ENSG00000165916.9	ENST00000619920.4:ENST00000602866.5:ENST00000298852.8:ENST00000530912.5:ENST00000524447.6:ENST00000531051.6:ENST00000530651.5:ENST00000530887.5:ENST00000527906.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	79	2	3.33839	3.43462	3.53085	6.59951e-4	1.61956e-4	0.0232396	0.0116382
chr16	88946328	88946427	6540990	0	-	0.323232	(0.32,0.35]	chr16	634104	46	INTRON	INTRON	CBFA2T3	ENSG00000129993.15	ENST00000268679.9:ENST00000563640.1:ENST00000570046.1	protein_coding	protein_coding	protein_coding	protein_coding	2	76	2	3.41554	3.4345749999999997	3.45361	0.00193809	0.00153152	0.0399255	0.0361484
chr12	48703869	48703969	5319441	0	-	0.37	(0.35,0.378]	chr12	506418	24	INTRON	INTRON	CCNT1	ENSG00000129315.11	ENST00000618666.4:ENST00000261900.8:ENST00000417344.2:ENST00000640148.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	31	2	2.57049	3.4344400000000004	4.29839	0.0294717	0.0262669	0.133676	0.128055
chr17	8482968	8483065	6720512	0	-	0.360825	(0.35,0.378]	chr17	659480	17	EXON_MRNA	EXON_MRNA:INTRON	MYH10	ENSG00000133026.14	ENST00000379980.8:ENST00000269243.8:ENST00000688902.1:ENST00000684843.1:ENST00000687178.1:ENST00000692526.1:ENST00000688497.1:ENST00000685418.1:ENST00000693441.1:ENST00000686654.1:ENST00000360416.8:ENST00000691566.1:ENST00000686521.1:ENST00000685631.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	31	2	2.57049	3.4344400000000004	4.29839	0.0294717	0.0262669	0.133676	0.128055
chr3	47665281	47665380	1683885	0	-	0.353535	(0.35,0.378]	chr3	172008	23	INTRON	INTRON	SMARCC1	ENSG00000173473.11	ENST00000254480.10:ENST00000425518.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	31	2	2.57049	3.4344400000000004	4.29839	0.0294717	0.0262669	0.133676	0.128055
chr4	122188861	122188952	2032909	0	+	0.373626	(0.35,0.378]	chr4	201826	4	INTRON	INTRON	KIAA1109	ENSG00000138688.17	ENST00000679879.1:ENST00000264501.8:ENST00000684987.1:ENST00000693420.1:ENST00000693334.1:ENST00000690536.1:ENST00000388738.8:ENST00000686075.1:ENST00000688884.1:ENST00000687476.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	31	2	2.57049	3.4344400000000004	4.29839	0.0294717	0.0262669	0.133676	0.128055
chr10	101789505	101789604	4680670	0	-	0.282828	(0.28,0.32]	chr10	431944	16	INTRON	INTRON	OGA	ENSG00000198408.14	ENST00000439817.5:ENST00000361464.8:ENST00000357797.9:ENST00000482611.5:ENST00000494347.5:ENST00000479811.5:ENST00000461645.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	55	2	1.71442	3.434	5.15358	0.0454351	0.0052282	0.164236	0.0633615
chr1	26237579	26237678	49518	0	+	0.353535	(0.35,0.378]	chr1	6192	29	INTRON	INTRON	CEP85	ENSG00000130695.16	ENST00000451429.8:ENST00000640292.2:ENST00000252992.8	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	2.30249	3.4339950000000004	4.5655	0.0519726	0.0155464	0.176696	0.100909
chr1	70321956	70322055	480540	0	-	0.373737	(0.35,0.378]	chr1	57758	60	INTRON	INTRON	ANKRD13C	ENSG00000118454.13	ENST00000370944.9:ENST00000262346.6:ENST00000498735.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	31	2	2.30249	3.4339950000000004	4.5655	0.0519726	0.0155464	0.176696	0.100909
chr1	154337047	154337147	228246	0	+	0.36	(0.35,0.378]	chr1	26469	3	SS3_PROX	SS3_PROX:INTRON	ATP8B2	ENSG00000143515.20	ENST00000368489.6:ENST00000368487.7:ENST00000672630.1:ENST00000426445.1:ENST00000696573.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	31	2	2.30249	3.4339950000000004	4.5655	0.0519726	0.0155464	0.176696	0.100909
chr11	43342653	43342751	4776523	0	+	0.377551	(0.35,0.378]	chr11	441673	1	UTR3	UTR3:EXON_MRNA	API5	ENSG00000166181.13	ENST00000534695.5:ENST00000455725.6:ENST00000531273.6:ENST00000420461.6:ENST00000378852.7	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	2.30249	3.4339950000000004	4.5655	0.0519726	0.0155464	0.176696	0.100909
chr14	20473019	20473109	5655985	0	+	0.366667	(0.35,0.378]	chr14	539165	7	EXON_MRNA	EXON_MRNA:INTRON	PNP	ENSG00000198805.12	ENST00000553418.5:ENST00000361505.10:ENST00000557229.5:ENST00000556293.5:ENST00000554056.5:ENST00000553591.1:ENST00000554065.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	31	2	2.30249	3.4339950000000004	4.5655	0.0519726	0.0155464	0.176696	0.100909
chr3	129273004	129273104	1499383	0	+	0.37	(0.35,0.378]	chr3	156633	1	SS5_PROX	SS5_PROX:INTRON	COPG1	ENSG00000181789.14	ENST00000314797.10:ENST00000515725.5:ENST00000509889.5:ENST00000514478.1:ENST00000512034.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	31	2	2.30249	3.4339950000000004	4.5655	0.0519726	0.0155464	0.176696	0.100909
chr3	170305780	170305878	1558153	0	+	0.357143	(0.35,0.378]	chr3	161417	28	UTR3	UTR3:EXON_MRNA	PRKCI	ENSG00000163558.13	ENST00000295797.5:ENST00000476635.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	31	2	2.30249	3.4339950000000004	4.5655	0.0519726	0.0155464	0.176696	0.100909
chr9	96393134	96393233	4295117	0	-	0.353535	(0.35,0.378]	chr9	394958	2	INTRON	INTRON	ZNF367	ENSG00000165244.7	ENST00000375256.5	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	2.30249	3.4339950000000004	4.5655	0.0519726	0.0155464	0.176696	0.100909
chr1	212754293	212754393	634405	0	-	0.5	(0.476,0.515]	chr1	74949	143	INTRON	INTRON	NSL1	ENSG00000117697.15	ENST00000366977.8:ENST00000366978.5:ENST00000366976.3:ENST00000626725.1	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	2.73205	3.433955	4.13586	0.031846	0.0159328	0.13151	0.109464
chr12	116038594	116038693	5423152	0	-	0.494949	(0.476,0.515]	chr12	518245	156	INTRON	INTRON	MED13L	ENSG00000123066.9	ENST00000281928.9:ENST00000650226.1:ENST00000648737.1:ENST00000548743.2:ENST00000647567.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	30	2	2.73205	3.433955	4.13586	0.031846	0.0159328	0.13151	0.109464
chr2	36910100	36910200	1094037	0	-	0.48	(0.476,0.515]	chr2	117209	41	INTRON	INTRON	STRN	ENSG00000115808.12	ENST00000263918.9:ENST00000379213.3	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	2.73205	3.433955	4.13586	0.031846	0.0159328	0.13151	0.109464
chr20	32419282	32419382	7256436	0	+	0.51	(0.476,0.515]	chr20	737076	469	INTRON	INTRON	ASXL1	ENSG00000171456.21	ENST00000651418.1:ENST00000375687.10:ENST00000613218.4:ENST00000644587.1:ENST00000620121.4:ENST00000646985.1:ENST00000643168.1:ENST00000306058.9:ENST00000645688.1:ENST00000470145.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	30	2	2.73205	3.433955	4.13586	0.031846	0.0159328	0.13151	0.109464
chr3	179359402	179359502	1567047	0	+	0.5	(0.476,0.515]	chr3	162080	4	SS5_PROX	SS5_PROX:INTRON	MFN1	ENSG00000171109.19	ENST00000471841.6:ENST00000357390.8:ENST00000467174.6:ENST00000263969.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	30	2	2.73205	3.433955	4.13586	0.031846	0.0159328	0.13151	0.109464
chr6	12056922	12057022	2814675	0	+	0.48	(0.476,0.515]	chr6	264800	178	INTRON	INTRON	HIVEP1	ENSG00000095951.17	ENST00000491710.5:ENST00000487103.5:ENST00000379388.7:ENST00000627968.2:ENST00000541134.5:ENST00000442081.6:ENST00000478545.1	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	2.73205	3.433955	4.13586	0.031846	0.0159328	0.13151	0.109464
chr7	50780042	50780126	3532550	0	-	0.488095	(0.476,0.515]	chr7	329533	3	SS3_PROX	SS3_PROX:INTRON	GRB10	ENSG00000106070.20	ENST00000335866.7:ENST00000401949.6:ENST00000644769.1:ENST00000644879.1:ENST00000402497.6:ENST00000407526.6:ENST00000645075.2:ENST00000439044.7:ENST00000644716.1:ENST00000483819.1:ENST00000470992.5:ENST00000467386.5:ENST00000490051.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	30	2	2.73205	3.433955	4.13586	0.031846	0.0159328	0.13151	0.109464
chr7	130081102	130081202	3413700	0	+	0.51	(0.476,0.515]	chr7	319098	99	INTRON	INTRON	KLHDC10	ENSG00000128607.14	ENST00000335420.10:ENST00000463413.1:ENST00000468226.1	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	2.73205	3.433955	4.13586	0.031846	0.0159328	0.13151	0.109464
chr8	39091571	39091671	3739261	0	+	0.48	(0.476,0.515]	chr8	347590	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ADAM9	ENSG00000168615.13	ENST00000678474.1:ENST00000676765.1:ENST00000676936.1:ENST00000677908.1:ENST00000677004.1:ENST00000677165.1:ENST00000481058.2:ENST00000676643.1:ENST00000676669.1:ENST00000679268.1:ENST00000677582.1:ENST00000676617.1:ENST00000677137.1:ENST00000678540.1:ENST00000677359.1:ENST00000678730.1:ENST00000487273.7:ENST00000678253.1:ENST00000676489.1:ENST00000379917.7:ENST00000468065.5:ENST00000481873.7:ENST00000676919.1:ENST00000678863.1:ENST00000484143.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	30	2	2.73205	3.433955	4.13586	0.031846	0.0159328	0.13151	0.109464
chr4	128089700	128089800	2042883	0	+	0.36	(0.35,0.378]	chr4	202868	70	INTRON	INTRON	LARP1B	ENSG00000138709.19	ENST00000512292.5:ENST00000326639.11:ENST00000508819.5:ENST00000394288.7:ENST00000432347.6:ENST00000649983.1:ENST00000650359.1:ENST00000648358.1:ENST00000507377.1	protein_coding	protein_coding	protein_coding	protein_coding	3	50	2	1.71046	3.4338450000000003	5.15723	0.0441269	0.00272706	0.162255	0.0467523
chr17	81832737	81832837	6849918	0	-	0.66	(0.57,1]	chr17	678310	1	SS5_PROX	SS5_PROX:INTRON	MCRIP1	ENSG00000225663.8	ENST00000455127.7:ENST00000538396.5:ENST00000572645.5:ENST00000573478.5:ENST00000576431.5:ENST00000575061.2	protein_coding	protein_coding	protein_coding	protein_coding	2	27	2	1.9042	3.4337799999999996	4.96336	0.0476976	2.05554e-4	0.153019	0.0124557
chr17	81924207	81924304	6850515	0	-	0.628866	(0.57,1]	chr17	678530	4	INTRON	INTRON	MAFG	ENSG00000197063.11	ENST00000357736.9:ENST00000574686.1	protein_coding	protein_coding	protein_coding	protein_coding	2	27	2	1.9042	3.4337799999999996	4.96336	0.0476976	2.05554e-4	0.153019	0.0124557
chr4	163161421	163161520	2281257	0	-	0.484848	(0.476,0.515]	chr4	221605	27	INTRON	INTRON	NAF1	ENSG00000145414.9	ENST00000422287.6:ENST00000274054.3:ENST00000509232.5:ENST00000502973.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	105	2	2.72421	3.4337	4.14319	0.00107964	3.39012e-5	0.0302522	0.0046443
chr13	19722061	19722161	5552331	0	-	0.29	(0.28,0.32]	chr13	530696	121	INTRON	INTRON	PSPC1	ENSG00000121390.19	ENST00000471658.5:ENST00000492741.5:ENST00000635562.1:ENST00000338910.9:ENST00000619300.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	77	2	1.34841	3.433545	5.51868	0.0525144	0.00162747	0.178179	0.0367966
chr1	45862569	45862669	94403	0	+	0.43	(0.408,0.44]	chr1	12696	326	INTRON	INTRON	MAST2	ENSG00000086015.23	ENST00000470809.1:ENST00000361297.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	30	2	2.74518	3.4335250000000004	4.12187	0.0354689	0.0152229	0.137535	0.108535
chr15	93021001	93021098	6104964	0	+	0.43299	(0.408,0.44]	chr15	581650	8	UTR3	UTR3:EXON_MRNA:INTRON	CHD2	ENSG00000173575.22	ENST00000626874.2:ENST00000394196.9:ENST00000625662.2:ENST00000627460.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	30	2	2.74518	3.4335250000000004	4.12187	0.0354689	0.0152229	0.137535	0.108535
chr3	9937061	9937161	1361860	0	+	0.42	(0.408,0.44]	chr3	143334	1	SS3_PROX	SS3_PROX:INTRON	CRELD1	ENSG00000163703.20	ENST00000683279.1:ENST00000684493.1:ENST00000673935.2:ENST00000683239.1:ENST00000673737.2:ENST00000682403.1:ENST00000683232.1:ENST00000683970.1:ENST00000683316.1:ENST00000683547.1:ENST00000683083.1:ENST00000383811.8:ENST00000452070.6:ENST00000682798.1:ENST00000467713.6:ENST00000683888.1:ENST00000683189.1:ENST00000684181.1:ENST00000674057.1:ENST00000682642.1:ENST00000682120.1:ENST00000683603.1:ENST00000684291.1:ENST00000683127.1:ENST00000684648.1:ENST00000465716.2:ENST00000674067.2:ENST00000682907.1:ENST00000682906.1:ENST00000683891.1:ENST00000682318.1:ENST00000682200.1:ENST00000684629.1:ENST00000684243.1:ENST00000326434.9:ENST00000683835.1:ENST00000682783.1:ENST00000682790.1:ENST00000682355.1:ENST00000682570.1:ENST00000684613.1:ENST00000683601.1:ENST00000682397.1:ENST00000683301.1:ENST00000682884.1:ENST00000683507.1:ENST00000683982.1:ENST00000683921.1:ENST00000684212.1:ENST00000682929.1:ENST00000684526.1:ENST00000673677.2:ENST00000684318.1:ENST00000684601.1:ENST00000397170.8:ENST00000683849.1:ENST00000682771.1:ENST00000673635.2:ENST00000684532.1:ENST00000414117.6:ENST00000683736.1:ENST00000682866.1:ENST00000683122.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	30	2	2.74518	3.4335250000000004	4.12187	0.0354689	0.0152229	0.137535	0.108535
chr4	51908719	51908819	1959226	0	+	0.44	(0.408,0.44]	chr4	196356	4	SS3_PROX	SS3_PROX:INTRON	DCUN1D4	ENSG00000109184.15	ENST00000509376.5:ENST00000381441.7:ENST00000334635.10:ENST00000507741.5:ENST00000477560.5:ENST00000451288.6:ENST00000510587.5:ENST00000507659.5:ENST00000505634.5:ENST00000510808.1:ENST00000512199.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	30	2	2.74518	3.4335250000000004	4.12187	0.0354689	0.0152229	0.137535	0.108535
chr9	97642342	97642432	4172692	0	+	0.433333	(0.408,0.44]	chr9	380145	3	INTRON	INTRON	NCBP1	ENSG00000136937.13	ENST00000478100.3:ENST00000375147.8:ENST00000629069.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	30	2	2.74518	3.4335250000000004	4.12187	0.0354689	0.0152229	0.137535	0.108535
chr14	49808719	49808818	5886802	0	-	0.313131	(0.28,0.32]	chr14	558706	22	INTRON	INTRON	NEMF	ENSG00000165525.18	ENST00000298310.10:ENST00000556925.5:ENST00000555970.5:ENST00000555411.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	37	2	2.2609	3.4334999999999996	4.6061	0.0671429	0.0102724	0.183051	0.089002
chr4	75767754	75767853	1974945	0	+	0.292929	(0.28,0.32]	chr4	197955	68	INTRON	INTRON	USO1	ENSG00000138768.15	ENST00000514213.7:ENST00000264904.8	protein_coding	protein_coding	protein_coding	protein_coding	1	37	2	2.2609	3.4334999999999996	4.6061	0.0671429	0.0102724	0.183051	0.089002
chr5	53918622	53918722	2616990	0	-	0.29	(0.28,0.32]	chr5	248835	66	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	37	2	2.2609	3.4334999999999996	4.6061	0.0671429	0.0102724	0.183051	0.089002
chr7	23331504	23331604	3502258	0	-	0.32	(0.28,0.32]	chr7	326829	119	INTRON	INTRON	IGF2BP3	ENSG00000136231.14	ENST00000258729.8:ENST00000619562.4:ENST00000421467.6:ENST00000467592.5:ENST00000497563.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	37	2	2.2609	3.4334999999999996	4.6061	0.0671429	0.0102724	0.183051	0.089002
chr7	111557854	111557954	3624070	0	-	0.32	(0.28,0.32]	chr7	337133	249	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000452895.5:ENST00000447215.5:ENST00000492938.1:ENST00000452753.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	37	2	2.2609	3.4334999999999996	4.6061	0.0671429	0.0102724	0.183051	0.089002
chrX	153759892	153759992	7911295	0	-	0.3	(0.28,0.32]	chrX	805122	210	INTRON	INTRON	PLXNB3-AS1	ENSG00000232725.1	ENST00000434284.1	lncRNA	lncRNA	lncRNA	lncRNA	1	37	2	2.2609	3.4334999999999996	4.6061	0.0671429	0.0102724	0.183051	0.089002
chr18	712159	712259	6939776	0	-	0.51	(0.476,0.515]	chr18	686445	4	SS5_PROX	SS5_PROX:INTRON	ENOSF1	ENSG00000132199.20	ENST00000647584.2:ENST00000383578.7:ENST00000340116.12:ENST00000581475.5:ENST00000580982.5:ENST00000585128.6:ENST00000584453.5:ENST00000578651.5:ENST00000585004.5:ENST00000583771.1:ENST00000580605.5:ENST00000581332.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	167	2	3.26855	3.43349	3.59843	6.60703e-5	4.99714e-6	0.0071649	0.00152038
chr3	10101549	10101644	1362987	0	+	0.442105	(0.44,0.476]	chr3	143645	4	UTR3	UTR3:EXON_MRNA	FANCD2	ENSG00000144554.13	ENST00000675286.1:ENST00000419585.5:ENST00000421731.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	13	349	2	3.31424	3.433485	3.55273	6.95553e-7	6.79859e-7	4.98794e-4	4.5546e-4
chr6	113952976	113953076	3195546	0	-	0.33	(0.32,0.35]	chr6	297710	3	SS5_PROX	SS5_PROX:INTRON	HDAC2	ENSG00000196591.12	ENST00000519065.6:ENST00000368632.6:ENST00000519108.5:ENST00000523334.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	46	2	2.49929	3.43342	4.36755	0.0300552	0.00776612	0.129138	0.0787356
chr1	19349154	19349253	387534	0	-	0.606061	(0.57,1]	chr1	46347	29	INTRON	INTRON	CAPZB	ENSG00000077549.19	ENST00000264202.8:ENST00000264203.7:ENST00000375142.5:ENST00000482808.2:ENST00000674449.1:ENST00000674390.1:ENST00000375144.6:ENST00000674432.1:ENST00000433834.5:ENST00000674228.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	27	2	2.42282	3.4332400000000005	4.44366	0.00879576	0.00210922	0.0790073	0.0425419
chr10	13346680	13346776	4558693	0	-	0.395833	(0.378,0.408]	chr10	420823	13	INTRON	INTRON	SEPHS1	ENSG00000086475.15	ENST00000327347.10:ENST00000545675.5:ENST00000378614.8:ENST00000413411.5	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	2.90162	3.433165	3.96471	0.032421	0.0113157	0.145026	0.0886121
chr9	111909306	111909406	4184576	0	+	0.28	[0,0.28]	chr9	381684	116	INTRON	INTRON	UGCG	ENSG00000148154.10	ENST00000374279.4:ENST00000489355.1:ENST00000495085.1:ENST00000490110.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	71	2	1.80873	3.433105	5.05748	0.0234525	0.0113653	0.128429	0.0886611
chr4	32058283	32058383	1942031	0	+	0.56	(0.515,0.57]	chr4	194727	601	INTRON	INTRON	LINC02506	ENSG00000251129.3	ENST00000662669.1:ENST00000665582.2:ENST00000667252.2:ENST00000660373.2:ENST00000684849.1:ENST00000513211.2:ENST00000659613.1:ENST00000657576.1:ENST00000686730.1:ENST00000685407.1:ENST00000685455.1:ENST00000655951.1	lncRNA	lncRNA	lncRNA	lncRNA	3	77	2	3.19161	3.43307	3.67453	3.49295e-4	3.27949e-4	0.017404	0.0160995
chr10	104011503	104011599	4517208	0	+	0.34375	(0.32,0.35]	chr10	416607	2	INTRON	INTRON	SLK	ENSG00000065613.15	ENST00000369755.4:ENST00000335753.8:ENST00000474260.1:ENST00000672560.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	60	2	1.68188	3.433015	5.18415	0.031521	0.00333629	0.144381	0.0512081
chr12	50514835	50514935	5137248	0	+	0.47	(0.44,0.476]	chr12	484468	92	INTRON	INTRON	DIP2B	ENSG00000066084.13	ENST00000301180.10:ENST00000549620.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	43	2	2.08277	3.43285	4.78293	0.0309998	0.00292033	0.13151	0.0494641
chr2	95957116	95957216	1179386	0	-	0.47	(0.44,0.476]	chr2	126058	3	SS3_PROX	SS3_PROX:INTRON	ANKRD36C	ENSG00000174501.15	ENST00000295246.7:ENST00000456556.5:ENST00000528268.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	43	2	2.08277	3.43285	4.78293	0.0309998	0.00292033	0.13151	0.0494641
chr10	74559786	74559886	4459866	0	+	0.27	[0,0.28]	chr10	411593	313	INTRON	INTRON	ADK	ENSG00000156110.15	ENST00000672429.1:ENST00000539909.6:ENST00000286621.7:ENST00000673352.1:ENST00000673310.1:ENST00000672920.1:ENST00000672394.1:ENST00000372734.5:ENST00000673027.1:ENST00000541550.6:ENST00000672604.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	37	2	2.57033	3.4328449999999995	4.29536	0.0590175	0.0305273	0.167915	0.143385
chr2	44357835	44357932	1111073	0	-	0.247423	[0,0.28]	chr2	119236	11	INTRON	INTRON	PREPL	ENSG00000138078.16	ENST00000425263.5:ENST00000409411.6:ENST00000426481.5:ENST00000541738.5:ENST00000409957.5:ENST00000409936.5:ENST00000409272.5:ENST00000260648.10:ENST00000410081.5:ENST00000378520.7:ENST00000378511.7:ENST00000540817.1:ENST00000438314.1:ENST00000477410.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	37	2	2.57033	3.4328449999999995	4.29536	0.0590175	0.0305273	0.167915	0.143385
chr2	159749902	159750002	899863	0	+	0.25	[0,0.28]	chr2	99551	6	INTRON	INTRON	MARCHF7	ENSG00000136536.15	ENST00000539065.5:ENST00000259050.8:ENST00000409175.6:ENST00000409591.5:ENST00000461582.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	37	2	2.57033	3.4328449999999995	4.29536	0.0590175	0.0305273	0.167915	0.143385
chr4	99038527	99038613	2003147	0	+	0.232558	[0,0.28]	chr4	199847	2	INTRON	INTRON	METAP1	ENSG00000164024.12	ENST00000510209.5:ENST00000296411.11:ENST00000507537.5:ENST00000506238.5:ENST00000503247.5:ENST00000510107.5:ENST00000513199.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	37	2	2.57033	3.4328449999999995	4.29536	0.0590175	0.0305273	0.167915	0.143385
chr6	7598874	7598973	2800220	0	+	0.212121	[0,0.28]	chr6	263918	34	INTRON	INTRON	SNRNP48	ENSG00000168566.13	ENST00000342415.6:ENST00000634363.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	37	2	2.57033	3.4328449999999995	4.29536	0.0590175	0.0305273	0.167915	0.143385
chr7	141765858	141765958	3440379	0	+	0.25	[0,0.28]	chr7	320701	151	INTRON	INTRON	SSBP1	ENSG00000106028.11	ENST00000465582.5	protein_coding	protein_coding	protein_coding	protein_coding	1	37	2	2.57033	3.4328449999999995	4.29536	0.0590175	0.0305273	0.167915	0.143385
chr1	40170088	40170187	80050	0	+	0.383838	(0.378,0.408]	chr1	10405	81	INTRON	INTRON	RLF	ENSG00000117000.9	ENST00000372771.5	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	2.54849	3.43274	4.31699	0.0273196	0.0250408	0.136494	0.12011
chr14	27000837	27000937	5664365	0	+	0.39	(0.378,0.408]	chr14	540202	660	INTRON	INTRON	ENSG00000258081	ENSG00000258081.4	ENST00000656336.1:ENST00000552303.1	lncRNA	lncRNA	lncRNA	lncRNA	1	30	2	2.54849	3.43274	4.31699	0.0273196	0.0250408	0.136494	0.12011
chr15	41701949	41702048	6007277	0	+	0.40404	(0.378,0.408]	chr15	571658	24	INTRON	INTRON	MGA	ENSG00000174197.18	ENST00000566718.6:ENST00000545763.6:ENST00000570161.6:ENST00000566586.6:ENST00000219905.13	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	30	2	2.54849	3.43274	4.31699	0.0273196	0.0250408	0.136494	0.12011
chr16	68129410	68129510	6370667	0	+	0.38	(0.378,0.408]	chr16	612201	24	INTRON	INTRON	NFATC3	ENSG00000072736.19	ENST00000563319.5:ENST00000569766.5:ENST00000553077.5:ENST00000566301.5:ENST00000549350.5:ENST00000566893.5:ENST00000575270.5:ENST00000561714.5:ENST00000346183.8:ENST00000568466.6:ENST00000539828.6:ENST00000562171.1:ENST00000349223.9:ENST00000329524.8:ENST00000379165.8:ENST00000562926.5:ENST00000570212.5:ENST00000563796.5:ENST00000567152.5:ENST00000563288.5:ENST00000535127.2:ENST00000565750.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	30	2	2.54849	3.43274	4.31699	0.0273196	0.0250408	0.136494	0.12011
chr22	23704629	23704728	7563145	0	-	0.393939	(0.378,0.408]	chr22	773685	34	INTRON	INTRON	GUSBP11	ENSG00000228315.12	ENST00000422506.5:ENST00000445682.2:ENST00000452737.5:ENST00000451837.5:ENST00000421064.5	lncRNA	lncRNA	lncRNA	lncRNA	1	30	2	2.54849	3.43274	4.31699	0.0273196	0.0250408	0.136494	0.12011
chr6	4062799	4062898	2790130	0	+	0.383838	(0.378,0.408]	chr6	263563	23	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PRPF4B	ENSG00000112739.17	ENST00000480058.5:ENST00000337659.11:ENST00000481109.5:ENST00000463634.6:ENST00000494674.1:ENST00000461612.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	30	2	2.54849	3.43274	4.31699	0.0273196	0.0250408	0.136494	0.12011
chr6	37292954	37293054	2855669	0	+	0.4	(0.378,0.408]	chr6	269985	12	INTRON	INTRON	TBC1D22B	ENSG00000065491.8	ENST00000373491.3	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	2.54849	3.43274	4.31699	0.0273196	0.0250408	0.136494	0.12011
chr6	140609396	140609496	2972552	0	+	0.39	(0.378,0.408]	chr6	279031	434	INTRON	INTRON	ENSG00000288714	ENSG00000288714.1	ENST00000684511.1	lncRNA	lncRNA	lncRNA	lncRNA	1	30	2	2.54849	3.43274	4.31699	0.0273196	0.0250408	0.136494	0.12011
chr7	74746138	74746237	3336167	0	+	0.383838	(0.378,0.408]	chr7	310485	3	EXON_MRNA	EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GTF2I	ENSG00000263001.8	ENST00000650807.1:ENST00000690345.1:ENST00000573035.6:ENST00000614986.4:ENST00000620879.4:ENST00000621734.4:ENST00000438130.6:ENST00000473333.1:ENST00000476035.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	30	2	2.54849	3.43274	4.31699	0.0273196	0.0250408	0.136494	0.12011
chr3	177063824	177063923	1871093	0	-	0.50505	(0.476,0.515]	chr3	187360	96	INTRON	INTRON	TBL1XR1	ENSG00000177565.18	ENST00000457928.7:ENST00000430069.5:ENST00000673974.1:ENST00000631253.2:ENST00000352800.10:ENST00000422442.6:ENST00000428970.5:ENST00000424913.5:ENST00000437738.5:ENST00000431421.5:ENST00000635794.1:ENST00000630796.2:ENST00000450267.5:ENST00000630833.2:ENST00000431674.5:ENST00000422066.5:ENST00000443315.5:ENST00000627825.2:ENST00000427349.5:ENST00000413084.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	65	2	3.19975	3.4326999999999996	3.66565	0.00383299	4.18031e-4	0.0542786	0.0182827
chr7	138563586	138563685	3435686	0	+	0.484848	(0.476,0.515]	chr7	320015	68	INTRON	INTRON	TRIM24	ENSG00000122779.18	ENST00000343526.9:ENST00000415680.6:ENST00000497516.5:ENST00000493595.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	116	2	3.22393	3.43269	3.64145	3.84737e-4	2.67082e-5	0.0182343	0.00407562
chr12	24943931	24944031	5297861	0	-	0.43	(0.408,0.44]	chr12	503884	410	INTRON	INTRON	BCAT1	ENSG00000060982.15	ENST00000261192.12:ENST00000342945.9:ENST00000539780.5:ENST00000546285.1	protein_coding	protein_coding	protein_coding	protein_coding	9	235	2	3.29393	3.43268	3.57143	1.2641e-5	1.55585e-6	0.00281675	7.47971e-4
chr21	39252179	39252278	7464911	0	-	0.383838	(0.378,0.408]	chr21	760483	9	INTRON	INTRON	BRWD1	ENSG00000185658.14	ENST00000333229.6:ENST00000342449.8:ENST00000446924.5:ENST00000380800.7:ENST00000430093.5:ENST00000445245.5:ENST00000445668.5:ENST00000412604.1:ENST00000455867.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	91	2	3.39176	3.43249	3.47322	0.00147803	1.17224e-4	0.0348908	0.00929802
chr16	22208477	22208576	6320695	0	+	0.383838	(0.378,0.408]	chr16	605081	14	INTRON	INTRON	EEF2K	ENSG00000103319.12	ENST00000263026.10:ENST00000568269.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	30	2	2.36428	3.43242	4.50056	0.0441088	0.015974	0.162255	0.101453
chr3	119919435	119919534	1793680	0	-	0.393939	(0.378,0.408]	chr3	180193	29	INTRON	INTRON	GSK3B	ENSG00000082701.17	ENST00000264235.13:ENST00000316626.6:ENST00000678439.1:ENST00000677502.1:ENST00000676566.1:ENST00000650344.2:ENST00000678181.1:ENST00000678561.1:ENST00000678787.1:ENST00000679066.1:ENST00000679188.1:ENST00000677788.1:ENST00000678245.1:ENST00000677169.1:ENST00000677885.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	30	2	2.36428	3.43242	4.50056	0.0441088	0.015974	0.162255	0.101453
chr4	150584291	150584390	2267409	0	-	0.393939	(0.378,0.408]	chr4	220689	4	INTRON	INTRON	LRBA	ENSG00000198589.14	ENST00000357115.9:ENST00000651943.2:ENST00000510413.5:ENST00000509835.5:ENST00000651695.1:ENST00000651035.1:ENST00000507224.5:ENST00000513021.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	30	2	2.36428	3.43242	4.50056	0.0441088	0.015974	0.162255	0.101453
chr5	62328756	62328855	2362258	0	+	0.40404	(0.378,0.408]	chr5	227725	165	INTRON	INTRON	KIF2A	ENSG00000068796.19	ENST00000401507.7:ENST00000407818.8:ENST00000674632.1:ENST00000674916.1:ENST00000676413.1:ENST00000676122.1:ENST00000674751.1:ENST00000514082.6:ENST00000675085.1:ENST00000504883.2:ENST00000381103.7:ENST00000676271.1:ENST00000512541.5:ENST00000674733.1:ENST00000506857.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	30	2	2.36428	3.43242	4.50056	0.0441088	0.015974	0.162255	0.101453
chr5	176166661	176166761	2774790	0	-	0.38	(0.378,0.408]	chr5	261215	71	INTRON	INTRON	ENSG00000248596:ENSG00000287579	ENSG00000248596.8:ENSG00000287579.1	ENST00000515403.5:ENST00000663646.1:ENST00000503307.2	lncRNA	lncRNA	lncRNA	lncRNA	1	30	2	2.36428	3.43242	4.50056	0.0441088	0.015974	0.162255	0.101453
chr5	180541752	180541852	2562339	0	+	0.39	(0.378,0.408]	chr5	245090	120	INTRON	INTRON	CNOT6	ENSG00000113300.13	ENST00000261951.9:ENST00000393356.7:ENST00000507016.1:ENST00000618123.4:ENST00000502447.1:ENST00000504343.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	30	2	2.36428	3.43242	4.50056	0.0441088	0.015974	0.162255	0.101453
chr6	88300704	88300802	3154157	0	-	0.408163	(0.378,0.408]	chr6	294139	13	INTRON	INTRON	ENSG00000234426	ENSG00000234426.3	ENST00000648572.1:ENST00000429137.1	lncRNA	lncRNA	lncRNA	lncRNA	1	30	2	2.36428	3.43242	4.50056	0.0441088	0.015974	0.162255	0.101453
chr7	129227638	129227738	3409498	0	+	0.39	(0.378,0.408]	chr7	318776	18	INTRON	INTRON	AHCYL2	ENSG00000158467.17	ENST00000325006.8:ENST00000446544.6	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	2.36428	3.43242	4.50056	0.0441088	0.015974	0.162255	0.101453
chr7	138582663	138582761	3435886	0	+	0.387755	(0.378,0.408]	chr7	320063	5	INTRON	INTRON	TRIM24	ENSG00000122779.18	ENST00000343526.9:ENST00000415680.6	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	2.36428	3.43242	4.50056	0.0441088	0.015974	0.162255	0.101453
chrX	153761113	153761212	7911308	0	-	0.40404	(0.378,0.408]	chrX	805126	1	INTRON	INTRON	PLXNB3-AS1	ENSG00000232725.1	ENST00000434284.1:ENST00000416854.1	lncRNA	lncRNA	lncRNA	lncRNA	1	30	2	2.36428	3.43242	4.50056	0.0441088	0.015974	0.162255	0.101453
chr3	100311977	100312077	1466096	0	+	0.28	[0,0.28]	chr3	153674	1	SS5_PROX	SS5_PROX:INTRON	TBC1D23	ENSG00000036054.13	ENST00000394144.9:ENST00000344949.9:ENST00000486274.5:ENST00000475134.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	61	2	1.91898	3.432295	4.94561	0.0266433	0.0150263	0.134413	0.0994339
chr2	74041885	74041985	812358	0	+	0.38	(0.378,0.408]	chr2	90852	384	INTRON	INTRON	TET3	ENSG00000187605.16	ENST00000409262.8:ENST00000305799.8	protein_coding	protein_coding	protein_coding	protein_coding	2	44	2	1.94681	3.4322850000000003	4.91776	0.0457723	0.00196368	0.149888	0.0411469
chr20	49134041	49134140	7351829	0	-	0.313131	(0.28,0.32]	chr20	749646	91	INTRON	INTRON	STAU1	ENSG00000124214.21	ENST00000371856.7:ENST00000371828.7:ENST00000340954.11:ENST00000347458.9:ENST00000360426.8:ENST00000371792.5:ENST00000371802.5:ENST00000437404.2	protein_coding	protein_coding	protein_coding	protein_coding	3	55	2	1.61031	3.432095	5.25388	0.0600513	0.00385849	0.190658	0.0542786
chr15	87376714	87376814	6253314	0	-	0.31	(0.28,0.32]	chr15	596790	495	INTRON	INTRON	ENSG00000259560	ENSG00000259560.2	ENST00000665121.1:ENST00000656130.1	lncRNA	lncRNA	lncRNA	lncRNA	1	39	2	2.62686	3.4320250000000003	4.23719	0.0289217	0.0264147	0.133676	0.1274
chr20	3927407	3927506	7308517	0	-	0.282828	(0.28,0.32]	chr20	744262	2	UTR3	UTR3:EXON_MRNA	RNF24	ENSG00000101236.17	ENST00000336095.10:ENST00000358395.11	protein_coding	protein_coding	protein_coding	protein_coding	1	39	2	2.62686	3.4320250000000003	4.23719	0.0289217	0.0264147	0.133676	0.1274
chr7	105375250	105375350	3603769	0	-	0.32	(0.28,0.32]	chr7	336161	683	INTRON	INTRON	SRPK2	ENSG00000135250.17	ENST00000393651.8:ENST00000482897.5:ENST00000460391.5:ENST00000462282.5:ENST00000465112.5:ENST00000482862.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	82	2	3.08462	3.431945	3.77927	0.0078976	3.56863e-4	0.076155	0.0169148
chr6	10932680	10932779	2812227	0	+	0.30303	(0.28,0.32]	chr6	264656	8	INTRON	INTRON	SYCP2L	ENSG00000153157.13	ENST00000341041.8:ENST00000283141.11:ENST00000543878.5:ENST00000474197.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	61	2	1.56134	3.431935	5.30253	0.0740624	0.0010319	0.191153	0.0294094
chr4	2001852	2001951	2095979	0	-	0.525253	(0.515,0.57]	chr4	207403	94	INTRON	INTRON	NELFA	ENSG00000185049.16	ENST00000542778.5:ENST00000382882.9:ENST00000333877.8:ENST00000431323.6:ENST00000455762.5:ENST00000421397.5:ENST00000411649.3:ENST00000443203.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	164	2	3.26496	3.43179	3.59862	8.45526e-6	5.54526e-6	0.00210337	0.00176075
chr1	205086924	205087022	622067	0	-	0.336735	(0.32,0.35]	chr1	73954	9	UTR3	UTR3:EXON_MRNA	RBBP5	ENSG00000117222.14	ENST00000367164.1:ENST00000264515.11	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	2.30673	3.43167	4.55661	0.0584434	0.00927858	0.167723	0.0855292
chr1	227021975	227022073	648716	0	-	0.418367	(0.408,0.44]	chr1	76912	46	INTRON	INTRON	CDC42BPA	ENSG00000143776.20	ENST00000366766.8:ENST00000366769.7:ENST00000334218.9:ENST00000366767.7:ENST00000448940.5:ENST00000442054.5:ENST00000366764.8:ENST00000429440.5	protein_coding	protein_coding	protein_coding	protein_coding	6	163	2	2.89338	3.431655	3.96993	1.20672e-4	7.22476e-6	0.00938389	0.00201824
chr14	105228519	105228619	5973621	0	-	0.53	(0.515,0.57]	chr14	568008	3	SS5_PROX	SS5_PROX:INTRON	BRF1	ENSG00000185024.18	ENST00000547530.7:ENST00000379937.6:ENST00000392557.8:ENST00000446501.6:ENST00000551787.5:ENST00000619151.4:ENST00000327359.7:ENST00000440513.7:ENST00000549655.5:ENST00000552127.5:ENST00000546417.5	protein_coding	protein_coding	protein_coding	protein_coding	3	46	2	1.49871	3.431555	5.3644	0.0770828	1.52226e-4	0.196285	0.0106137
chr16	16015128	16015224	6308416	0	+	0.46875	(0.44,0.476]	chr16	603528	1	INTRON	INTRON	ABCC1	ENSG00000103222.20	ENST00000574224.2:ENST00000678422.1:ENST00000677164.1:ENST00000399408.7:ENST00000572882.3:ENST00000399410.8:ENST00000679043.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	117	2	3.11801	3.43145	3.74489	6.56773e-4	1.37916e-5	0.0233791	0.00276767
chr1	108935730	108935827	518876	0	-	0.340206	(0.32,0.35]	chr1	60860	4	INTRON	INTRON	CLCC1	ENSG00000121940.17	ENST00000690509.1:ENST00000687328.1:ENST00000685014.1:ENST00000685540.1:ENST00000686576.1:ENST00000688070.1:ENST00000691513.1:ENST00000686821.1:ENST00000692511.1:ENST00000689479.1:ENST00000687646.1:ENST00000687998.1:ENST00000687226.1:ENST00000693336.1:ENST00000689991.1:ENST00000687591.1:ENST00000691777.1:ENST00000690756.1:ENST00000688778.1:ENST00000685104.1:ENST00000689103.1:ENST00000687734.1:ENST00000686434.1:ENST00000685497.1:ENST00000691342.1:ENST00000686776.1:ENST00000692342.1:ENST00000689351.1:ENST00000692584.1:ENST00000692775.1:ENST00000687134.1:ENST00000690707.1:ENST00000687675.1:ENST00000688298.1:ENST00000675018.1:ENST00000690781.1:ENST00000691556.1:ENST00000689189.1:ENST00000687099.1:ENST00000685791.1:ENST00000687865.1:ENST00000687449.1:ENST00000688285.1:ENST00000686817.1:ENST00000369968.7:ENST00000674992.1:ENST00000675001.1:ENST00000369969.7:ENST00000356970.6:ENST00000692184.1:ENST00000482889.2:ENST00000369976.6:ENST00000688610.1:ENST00000675128.1:ENST00000693089.1:ENST00000675571.1:ENST00000675650.1:ENST00000369970.8:ENST00000674561.2:ENST00000675451.1:ENST00000675654.1:ENST00000675790.1:ENST00000675584.1:ENST00000692795.1:ENST00000691731.1:ENST00000689359.1:ENST00000676392.2:ENST00000676391.2:ENST00000676454.1:ENST00000674849.1:ENST00000675956.1:ENST00000302500.5:ENST00000675508.1:ENST00000688168.1:ENST00000693673.1:ENST00000692404.1:ENST00000686078.1:ENST00000690874.1:ENST00000686961.1:ENST00000692732.1:ENST00000685628.1:ENST00000676306.1:ENST00000348264.6:ENST00000675247.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	61	2	1.84365	3.43141	5.01917	0.0184323	0.0055659	0.116493	0.0648867
chr6	8435076	8435173	3055117	0	-	0.649485	(0.57,1]	chr6	284222	1	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	SLC35B3	ENSG00000124786.12	ENST00000644923.2:ENST00000649788.1:ENST00000648987.1:ENST00000379660.4:ENST00000648867.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	74	2	3.18352	3.43138	3.67924	3.76713e-5	9.71527e-6	0.00491469	0.00240387
chr4	99056853	99056952	2003336	0	+	0.515152	(0.476,0.515]	chr4	199877	76	INTRON	INTRON	METAP1	ENSG00000164024.12	ENST00000296411.11:ENST00000510133.5:ENST00000514051.1	protein_coding	protein_coding	protein_coding	protein_coding	4	56	2	1.95469	3.43115	4.90761	0.0115753	0.00386428	0.0962115	0.0542786
chr1	15864289	15864389	34825	0	+	0.52	(0.515,0.57]	chr1	4246	158	INTRON	INTRON	SPEN	ENSG00000065526.12	ENST00000673875.1:ENST00000375759.8	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	2.65834	3.431075	4.20381	0.0189208	0.0187418	0.117523	0.108861
chr1	32073972	32074072	63148	0	+	0.53	(0.515,0.57]	chr1	8008	1	SS5_PROX	SS5_PROX:INTRON	TMEM39B	ENSG00000121775.18	ENST00000487305.5:ENST00000438825.5:ENST00000336294.10:ENST00000441402.5:ENST00000472503.5:ENST00000468135.5:ENST00000466321.5:ENST00000476968.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	27	2	2.65834	3.431075	4.20381	0.0189208	0.0187418	0.117523	0.108861
chr1	50598205	50598304	448626	0	-	0.525253	(0.515,0.57]	chr1	54219	16	INTRON	INTRON	FAF1	ENSG00000185104.21	ENST00000396153.7:ENST00000494400.5:ENST00000472808.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	27	2	2.65834	3.431075	4.20381	0.0189208	0.0187418	0.117523	0.108861
chr1	61699172	61699270	468108	0	-	0.520408	(0.515,0.57]	chr1	56559	18	UTR3	UTR3:EXON_MRNA:INTRON	TM2D1	ENSG00000162604.12	ENST00000606498.5:ENST00000294613.9:ENST00000371180.6:ENST00000488206.5:ENST00000472989.5:ENST00000468586.5:ENST00000371178.5:ENST00000494926.5:ENST00000496465.1:ENST00000371177.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	27	2	2.65834	3.431075	4.20381	0.0189208	0.0187418	0.117523	0.108861
chr16	66615040	66615137	6501090	0	-	0.556701	(0.515,0.57]	chr16	628949	4	UTR3	UTR3:EXON_MRNA	CMTM4	ENSG00000183723.13	ENST00000394106.7:ENST00000330687.8:ENST00000581487.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	27	2	2.65834	3.431075	4.20381	0.0189208	0.0187418	0.117523	0.108861
chr17	37537381	37537478	6763302	0	-	0.546392	(0.515,0.57]	chr17	665040	14	EXON_MRNA	EXON_MRNA:INTRON	SYNRG	ENSG00000275066.5	ENST00000612223.5:ENST00000621136.4:ENST00000616179.4:ENST00000614941.4:ENST00000619541.4:ENST00000622045.4:ENST00000619914.1:ENST00000614196.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	27	2	2.65834	3.431075	4.20381	0.0189208	0.0187418	0.117523	0.108861
chr2	70237668	70237768	1152359	0	-	0.56	(0.515,0.57]	chr2	123109	11	INTRON	INTRON	C2orf42:TIA1	ENSG00000115998.8:ENSG00000116001.17	ENST00000470096.1:ENST00000415783.6:ENST00000433529.7:ENST00000282574.8:ENST00000445587.5:ENST00000416149.6:ENST00000474809.6:ENST00000477044.6:ENST00000496452.5:ENST00000481650.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	27	2	2.65834	3.431075	4.20381	0.0189208	0.0187418	0.117523	0.108861
chr2	24511188	24511288	709456	0	+	0.33	(0.32,0.35]	chr2	82200	186	INTRON	INTRON	NCOA1	ENSG00000084676.16	ENST00000348332.8:ENST00000496333.5:ENST00000406961.5:ENST00000469850.5:ENST00000405141.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	45	2	2.4053	3.430795	4.45629	0.0246089	0.0108284	0.12011	0.0920575
chr14	102654803	102654903	5823155	0	+	0.46	(0.44,0.476]	chr14	552490	611	INTRON	INTRON	RCOR1	ENSG00000089902.10	ENST00000262241.7	protein_coding	protein_coding	protein_coding	protein_coding	5	140	2	3.39137	3.43079	3.47021	1.73175e-4	1.14089e-5	0.0120833	0.00249332
chr2	97249844	97249943	832269	0	+	0.363636	(0.35,0.378]	chr2	93261	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ANKRD36	ENSG00000135976.21	ENST00000420699.9:ENST00000652721.1:ENST00000461153.7:ENST00000494336.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	51	2	2.07049	3.4306400000000004	4.79079	0.0140397	0.00846427	0.102801	0.0776969
chr1	65332020	65332120	136315	0	+	0.52	(0.515,0.57]	chr1	15352	217	INTRON	INTRON	DNAJC6	ENSG00000116675.16	ENST00000463018.5:ENST00000494710.6:ENST00000263441.11:ENST00000395325.7:ENST00000483402.1:ENST00000371069.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	27	2	2.35125	3.430625	4.51	0.0436431	0.00809449	0.162255	0.0766625
chr1	173831034	173831109	256441	0	+	0.52	(0.515,0.57]	chr1	30609	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DARS2	ENSG00000117593.12	ENST00000648807.1:ENST00000648960.1:ENST00000647788.1:ENST00000647730.1:ENST00000649067.1:ENST00000649689.2:ENST00000648271.1:ENST00000647645.1:ENST00000471476.2:ENST00000650297.1:ENST00000648458.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	27	2	2.35125	3.430625	4.51	0.0436431	0.00809449	0.162255	0.0766625
chr13	19717775	19717874	5552288	0	-	0.555556	(0.515,0.57]	chr13	530696	78	INTRON	INTRON	PSPC1	ENSG00000121390.19	ENST00000471658.5:ENST00000492741.5:ENST00000635562.1:ENST00000338910.9:ENST00000619300.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	27	2	2.35125	3.430625	4.51	0.0436431	0.00809449	0.162255	0.0766625
chr16	8045123	8045223	6440960	0	-	0.53	(0.515,0.57]	chr16	620351	375	INTRON	INTRON	ENSG00000260289	ENSG00000260289.2	ENST00000670665.1:ENST00000654046.1:ENST00000567103.2	lncRNA	lncRNA	lncRNA	lncRNA	1	27	2	2.35125	3.430625	4.51	0.0436431	0.00809449	0.162255	0.0766625
chr2	98459980	98460080	833030	0	+	0.52	(0.515,0.57]	chr2	93413	145	INTRON	INTRON	INPP4A	ENSG00000040933.16	ENST00000409016.8:ENST00000409851.8:ENST00000074304.9:ENST00000409463.5:ENST00000409540.7	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	2.35125	3.430625	4.51	0.0436431	0.00809449	0.162255	0.0766625
chr22	50213069	50213167	7544138	0	+	0.540816	(0.515,0.57]	chr22	770996	18	INTRON	INTRON	SELENOO	ENSG00000073169.15	ENST00000380903.7:ENST00000492092.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	27	2	2.35125	3.430625	4.51	0.0436431	0.00809449	0.162255	0.0766625
chr3	44763177	44763277	1412232	0	+	0.52	(0.515,0.57]	chr3	148150	9	INTRON	INTRON	KIF15	ENSG00000163808.17	ENST00000438321.5:ENST00000326047.9:ENST00000481166.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	27	2	2.35125	3.430625	4.51	0.0436431	0.00809449	0.162255	0.0766625
chr5	140486307	140486382	2503691	0	+	0.546667	(0.515,0.57]	chr5	239240	2	INTRON	INTRON	ANKHD1	ENSG00000131503.21	ENST00000297183.10:ENST00000360839.7:ENST00000421134.5:ENST00000246149.10:ENST00000412116.5	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	2.35125	3.430625	4.51	0.0436431	0.00809449	0.162255	0.0766625
chr7	5705664	5705764	3474192	0	-	0.54	(0.515,0.57]	chr7	324821	528	INTRON	INTRON	RNF216	ENSG00000011275.19	ENST00000425013.6:ENST00000389902.8:ENST00000389900.8:ENST00000484458.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	27	2	2.35125	3.430625	4.51	0.0436431	0.00809449	0.162255	0.0766625
chr7	129236036	129236135	3409582	0	+	0.535354	(0.515,0.57]	chr7	318776	102	INTRON	INTRON	AHCYL2	ENSG00000158467.17	ENST00000325006.8:ENST00000446544.6	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	2.35125	3.430625	4.51	0.0436431	0.00809449	0.162255	0.0766625
chr12	11650660	11650759	5076610	0	+	0.434343	(0.408,0.44]	chr12	480040	1	INTRON	INTRON	ETV6	ENSG00000139083.11	ENST00000396373.9:ENST00000541426.1:ENST00000544715.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	43	2	2.00228	3.4305	4.85872	0.0389732	0.00221911	0.143072	0.0435144
chr16	18789796	18789896	6456681	0	-	0.48	(0.476,0.515]	chr16	622535	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	RPS15A	ENSG00000134419.15	ENST00000322989.8:ENST00000572008.5:ENST00000563390.5:ENST00000574723.5:ENST00000576008.5:ENST00000562935.5:ENST00000569365.6:ENST00000565420.5:ENST00000573554.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	149	2	2.02162	3.4304499999999996	4.83928	0.00361279	9.58859e-7	0.055406	6.06868e-4
chr19	5716399	5716494	7124679	0	-	0.463158	(0.44,0.476]	chr19	717172	10	INTRON	INTRON	LONP1	ENSG00000196365.12	ENST00000360614.8:ENST00000587552.5:ENST00000540670.6:ENST00000593119.5:ENST00000585374.5:ENST00000590558.5:ENST00000590729.5:ENST00000587365.1:ENST00000586617.1:ENST00000590728.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	65	2	3.31011	3.430395	3.55068	0.00259023	7.06861e-4	0.0452934	0.0241881
chr2	175167382	175167465	1272334	0	-	0.590361	(0.57,1]	chr2	134483	4	PRIMIRNA	PRIMIRNA:INTRON	ATF2:MIR933	ENSG00000115966.18:ENSG00000215973.1	ENST00000345739.9:ENST00000426833.7:ENST00000264110.7:ENST00000409635.5:ENST00000428760.5:ENST00000392544.5:ENST00000417080.5:ENST00000456655.5:ENST00000421438.5:ENST00000429579.5:ENST00000415955.5:ENST00000409499.5:ENST00000435231.6:ENST00000437522.5:ENST00000409833.5:ENST00000413123.5:ENST00000445349.1:ENST00000401154.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript:primary_miRNA	10	118	2	2.88533	3.430155	3.97498	2.72443e-6	1.04936e-6	0.00105686	6.32938e-4
chr1	12336121	12336219	29329	0	+	0.326531	(0.32,0.35]	chr1	3590	4	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	VPS13D	ENSG00000048707.15	ENST00000620676.6:ENST00000613099.4:ENST00000011700.10:ENST00000646917.1:ENST00000460333.5:ENST00000487188.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	52	2	1.72898	3.430105	5.13123	0.0425433	0.00394704	0.161951	0.0548259
chr2	61438004	61438104	1130226	0	-	0.35	(0.32,0.35]	chr2	121499	168	INTRON	INTRON	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000453133.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	52	2	1.72898	3.430105	5.13123	0.0425433	0.00394704	0.161951	0.0548259
chr6	133970151	133970251	2961927	0	+	0.33	(0.32,0.35]	chr6	278515	8	INTRON	INTRON	TBPL1	ENSG00000028839.10	ENST00000613034.4:ENST00000416965.5:ENST00000457715.1:ENST00000367871.5:ENST00000237264.9:ENST00000367869.1	protein_coding	protein_coding	protein_coding	protein_coding	3	52	2	1.72898	3.430105	5.13123	0.0425433	0.00394704	0.161951	0.0548259
chr8	22451056	22451156	3713419	0	+	0.53	(0.515,0.57]	chr8	344875	92	INTRON	INTRON	PPP3CC	ENSG00000120910.15	ENST00000518852.5:ENST00000240139.10:ENST00000289963.12:ENST00000397775.7:ENST00000522000.1	protein_coding	protein_coding	protein_coding	protein_coding	3	43	2	1.81744	3.4298450000000003	5.04225	0.031028	0.00131841	0.143457	0.0331539
chr20	48937400	48937500	7282732	0	+	0.41	(0.408,0.44]	chr20	740596	150	INTRON	INTRON	ARFGEF2	ENSG00000124198.10	ENST00000371917.5:ENST00000681399.1:ENST00000679436.1:ENST00000681885.1:ENST00000681021.1:ENST00000680871.1:ENST00000681656.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	48	2	2.03431	3.429805	4.8253	0.0154896	0.0056738	0.108998	0.0653997
chr5	39056218	39056318	2605466	0	-	0.38	(0.378,0.408]	chr5	247896	347	INTRON	INTRON	RICTOR	ENSG00000164327.13	ENST00000357387.8:ENST00000511516.5:ENST00000296782.9:ENST00000510711.5:ENST00000513566.1:ENST00000514735.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	90	2	3.2479	3.42974	3.61158	8.34292e-4	2.54231e-4	0.0266389	0.0142045
chr10	91945646	91945745	4488949	0	+	0.333333	(0.32,0.35]	chr10	413306	27	INTRON	INTRON	BTAF1	ENSG00000095564.15	ENST00000265990.12	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	2.40308	3.429685	4.45629	0.0417732	0.0246089	0.161736	0.12011
chr4	123133577	123133677	2037750	0	+	0.35	(0.32,0.35]	chr4	202384	314	INTRON	INTRON	SPATA5	ENSG00000145375.9	ENST00000675612.1:ENST00000274008.5	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	2.40308	3.429685	4.45629	0.0417732	0.0246089	0.161736	0.12011
chr5	88197568	88197668	2669013	0	-	0.34	(0.32,0.35]	chr5	252629	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	TMEM161B	ENSG00000164180.14	ENST00000514135.5:ENST00000296595.11:ENST00000511087.5:ENST00000510089.5:ENST00000506536.5:ENST00000511218.5:ENST00000512429.5:ENST00000515293.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	32	2	2.40308	3.429685	4.45629	0.0417732	0.0246089	0.161736	0.12011
chr6	75674054	75674152	2905682	0	+	0.326531	(0.32,0.35]	chr6	274554	30	INTRON	INTRON	SENP6	ENSG00000112701.18	ENST00000370010.6:ENST00000447266.7:ENST00000327284.12:ENST00000424947.6:ENST00000503501.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	32	2	2.40308	3.429685	4.45629	0.0417732	0.0246089	0.161736	0.12011
chr8	140862117	140862217	4078672	0	-	0.33	(0.32,0.35]	chr8	370519	151	INTRON	INTRON	PTK2	ENSG00000169398.20	ENST00000696786.1:ENST00000522684.5:ENST00000395218.3:ENST00000519654.5:ENST00000521059.5:ENST00000517887.5:ENST00000519993.5:ENST00000340930.7:ENST00000519419.5:ENST00000524357.5:ENST00000521791.5:ENST00000523067.5:ENST00000520828.5:ENST00000520475.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	32	2	2.40308	3.429685	4.45629	0.0417732	0.0246089	0.161736	0.12011
chr9	93667440	93667540	4160131	0	+	0.33	(0.32,0.35]	chr9	379317	2	SS5_PROX	SS5_PROX:INTRON	PHF2	ENSG00000197724.11	ENST00000359246.9:ENST00000375376.8:ENST00000610682.1	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	2.40308	3.429685	4.45629	0.0417732	0.0246089	0.161736	0.12011
chr9	129834267	129834360	4360345	0	-	0.333333	(0.32,0.35]	chr9	400940	7	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	C9orf78	ENSG00000136819.15	ENST00000372447.7:ENST00000461349.5:ENST00000461762.5:ENST00000461539.5:ENST00000492991.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	32	2	2.40308	3.429685	4.45629	0.0417732	0.0246089	0.161736	0.12011
chr19	1389710	1389807	6995027	0	+	0.536082	(0.515,0.57]	chr19	693148	9	EXON_MRNA	EXON_MRNA:INTRON	NDUFS7	ENSG00000115286.21	ENST00000546283.5:ENST00000545446.5:ENST00000543289.5:ENST00000539480.5:ENST00000538662.5:ENST00000313408.11:ENST00000436115.6:ENST00000233627.14:ENST00000534853.5:ENST00000546172.7:ENST00000414651.3:ENST00000538929.5:ENST00000622587.4:ENST00000538523.5:ENST00000540530.5:ENST00000535382.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	36	2	2.26012	3.4296300000000004	4.59914	0.0160033	0.00616166	0.109464	0.0676501
chr6	107418702	107418802	3181505	0	-	0.48	(0.476,0.515]	chr6	296346	840	INTRON	INTRON	PDSS2	ENSG00000164494.12	ENST00000369037.9:ENST00000369031.4	protein_coding	protein_coding	protein_coding	protein_coding	3	48	2	2.01953	3.429575	4.83962	0.0163662	0.00480934	0.109586	0.0602209
chr1	109372986	109373086	520770	0	-	0.47	(0.44,0.476]	chr1	61195	30	INTRON	INTRON	SORT1	ENSG00000134243.12	ENST00000538502.5:ENST00000256637.8:ENST00000493736.5:ENST00000482236.5:ENST00000633956.1:ENST00000471996.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	89	2	3.35227	3.42943	3.50659	0.0022005699999999998	5.83536e-5	0.0417893	0.00625795
chr2	70228813	70228897	1152266	0	-	0.440476	(0.44,0.476]	chr2	123089	4	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	C2orf42:TIA1	ENSG00000115998.8:ENSG00000116001.17	ENST00000470096.1:ENST00000415783.6:ENST00000433529.7:ENST00000282574.8:ENST00000445587.5:ENST00000454815.6:ENST00000416149.6:ENST00000474809.6:ENST00000477044.6:ENST00000361692.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	89	2	3.35227	3.42943	3.50659	0.0022005699999999998	5.83536e-5	0.0417893	0.00625795
chr1	8766126	8766226	373269	0	-	0.3	(0.28,0.32]	chr1	43549	124	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000656437.1:ENST00000659924.1	protein_coding	protein_coding	protein_coding	protein_coding	1	40	2	2.73077	3.4294200000000004	4.12807	0.0338135	0.0220748	0.146709	0.115395
chr1	28901205	28901304	58821	0	+	0.535354	(0.515,0.57]	chr1	7617	70	INTRON	INTRON	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000647918.1:ENST00000646800.1:ENST00000644342.1:ENST00000646189.1:ENST00000482464.6:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000646260.1:ENST00000373798.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	76	2	3.0958	3.42937	3.76294	5.63557e-4	2.08636e-4	0.0219303	0.0125926
chr10	125079301	125079401	4713522	0	-	0.56	(0.515,0.57]	chr10	434897	398	INTRON	INTRON	CTBP2	ENSG00000175029.17	ENST00000337195.9:ENST00000411419.6:ENST00000494626.6:ENST00000531469.5:ENST00000460976.5:ENST00000476817.1:ENST00000530884.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	29	2	2.68833	3.4293500000000003	4.17037	0.0184931	0.0139194	0.108861	0.10247
chr19	2164765	2164864	6996177	0	+	0.535354	(0.515,0.57]	chr19	693417	1	INTRON	INTRON	DOT1L	ENSG00000104885.19	ENST00000398665.8:ENST00000686010.1:ENST00000452696.5:ENST00000478937.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	29	2	2.68833	3.4293500000000003	4.17037	0.0184931	0.0139194	0.108861	0.10247
chr6	20101610	20101706	3069274	0	-	0.53125	(0.515,0.57]	chr6	285223	21	UTR3	UTR3:EXON_MRNA	MBOAT1	ENSG00000172197.11	ENST00000324607.8	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	2.68833	3.4293500000000003	4.17037	0.0184931	0.0139194	0.108861	0.10247
chr20	50086746	50086845	7353689	0	-	0.555556	(0.515,0.57]	chr20	749863	21	INTRON	INTRON	UBE2V1	ENSG00000244687.13	ENST00000340309.7:ENST00000371677.7:ENST00000415862.6:ENST00000557021.5:ENST00000617119.4:ENST00000625172.3:ENST00000396059.7:ENST00000371674.8:ENST00000371657.9:ENST00000483534.5:ENST00000492371.6:ENST00000486653.5:ENST00000490555.1:ENST00000493090.5:ENST00000467839.5:ENST00000472923.5:ENST00000432266.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	36	2	1.94945	3.4292849999999997	4.90912	0.0414068	0.0021669	0.161557	0.0417866
chr19	4945660	4945760	7003241	0	+	0.5	(0.476,0.515]	chr19	694756	4	SS3_PROX	SS3_PROX:INTRON	UHRF1	ENSG00000276043.5	ENST00000612630.4:ENST00000620565.4:ENST00000624301.3:ENST00000613817.4:ENST00000650932.1:ENST00000615884.4:ENST00000622802.4:ENST00000616255.1	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	2.8863	3.4291549999999997	3.97201	0.030904	0.0111679	0.143385	0.0877435
chrX	113735999	113736099	7865399	0	-	0.48	(0.476,0.515]	chrX	801544	1198	EXON_LNCRNA	EXON_LNCRNA:INTRON	XACT	ENSG00000241743.4	ENST00000468762.3:ENST00000674361.1	lncRNA	lncRNA	lncRNA	lncRNA	1	34	2	2.8863	3.4291549999999997	3.97201	0.030904	0.0111679	0.143385	0.0877435
chr3	73050750	73050850	1452497	0	+	0.34	(0.32,0.35]	chr3	152969	30	INTRON	INTRON	PPP4R2	ENSG00000163605.15	ENST00000482242.5:ENST00000356692.10:ENST00000470976.1:ENST00000488810.5:ENST00000476505.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	52	2	1.78201	3.42915	5.07629	0.0365003	0.00468114	0.153759	0.0600108
chr2	113915694	113915792	854502	0	+	0.336735	(0.32,0.35]	chr2	95903	21	INTRON	INTRON	ACTR3	ENSG00000115091.12	ENST00000443297.5:ENST00000263238.7:ENST00000415792.5:ENST00000446821.5:ENST00000535589.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	52	2	1.67393	3.4290399999999996	5.18415	0.0496128	0.00333629	0.174685	0.0512081
chr7	111315786	111315886	3621640	0	-	0.35	(0.32,0.35]	chr7	337093	3519	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	52	2	1.67393	3.4290399999999996	5.18415	0.0496128	0.00333629	0.174685	0.0512081
chr1	23040910	23041010	43973	0	+	0.37	(0.35,0.378]	chr1	5258	99	INTRON	INTRON	KDM1A	ENSG00000004487.18	ENST00000692214.1:ENST00000686934.1:ENST00000689853.1:ENST00000465864.2:ENST00000691256.1:ENST00000688122.1:ENST00000692056.1:ENST00000692853.1:ENST00000689366.1:ENST00000686270.1:ENST00000685102.1:ENST00000690627.1:ENST00000686771.1:ENST00000692209.1:ENST00000686339.1:ENST00000691813.1:ENST00000693156.1:ENST00000688235.1:ENST00000692975.1:ENST00000687202.1:ENST00000691682.1:ENST00000691404.1:ENST00000691694.1:ENST00000688680.1:ENST00000356634.7:ENST00000400181.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	70	2	1.49914	3.4287099999999997	5.35828	0.0306686	0.00135282	0.143385	0.0336321
chr17	82269205	82269304	6852792	0	-	0.515152	(0.476,0.515]	chr17	679167	18	INTRON	INTRON	CSNK1D	ENSG00000141551.15	ENST00000398519.9:ENST00000314028.11:ENST00000581241.5:ENST00000392334.6:ENST00000403276.7:ENST00000582844.5:ENST00000580446.1:ENST00000581660.5:ENST00000578194.5:ENST00000579316.5:ENST00000584472.5:ENST00000585026.1:ENST00000579308.1:ENST00000581655.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	65	2	3.40003	3.42857	3.45711	0.00140905	0.00139193	0.0341261	0.0340865
chr1	65274214	65274313	135735	0	+	0.252525	[0,0.28]	chr1	15346	89	INTRON	INTRON	DNAJC6	ENSG00000116675.16	ENST00000463018.5:ENST00000494710.6:ENST00000263441.11:ENST00000395325.7:ENST00000483402.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	60	2	1.79953	3.428505	5.05748	0.0377477	0.0113653	0.156608	0.0886611
chr10	21704498	21704598	4406135	0	+	0.27	[0,0.28]	chr10	406537	75	INTRON	INTRON	MLLT10	ENSG00000078403.17	ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000651298.1:ENST00000377059.7:ENST00000651382.1:ENST00000438473.6:ENST00000420525.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	60	2	1.79953	3.428505	5.05748	0.0377477	0.0113653	0.156608	0.0886611
chr1	95147215	95147314	166868	0	+	0.454545	(0.44,0.476]	chr1	18114	28	INTRON	INTRON	TLCD4:TLCD4-RWDD3	ENSG00000152078.10:ENSG00000271092.5	ENST00000370203.9:ENST00000456991.5:ENST00000604534.5:ENST00000455656.1:ENST00000463375.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	63	2	1.892	3.4284549999999996	4.96491	0.00935701	0.0034249	0.0858596	0.0517761
chr1	108633519	108633618	178007	0	+	0.40404	(0.378,0.408]	chr1	19325	35	INTRON	INTRON	FAM102B	ENSG00000162636.16	ENST00000405454.1:ENST00000370035.8:ENST00000483371.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	33	2	2.53503	3.428385	4.32174	0.0319942	0.0132362	0.13174	0.0999551
chr10	72338511	72338611	4644146	0	-	0.4	(0.378,0.408]	chr10	427320	2	SS3_PROX	SS3_PROX:INTRON	DNAJB12	ENSG00000148719.16	ENST00000338820.7:ENST00000394903.6:ENST00000444643.8:ENST00000461919.5:ENST00000463786.2	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	2.53503	3.428385	4.32174	0.0319942	0.0132362	0.13174	0.0999551
chr15	45069194	45069288	6016851	0	+	0.404255	(0.378,0.408]	chr15	573213	1	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	SORD	ENSG00000140263.15	ENST00000674405.1:ENST00000558789.5:ENST00000267814.14:ENST00000559230.5:ENST00000674368.1:ENST00000674387.1:ENST00000558580.1:ENST00000558574.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	33	2	2.53503	3.428385	4.32174	0.0319942	0.0132362	0.13174	0.0999551
chr4	53120636	53120736	2142883	0	-	0.39	(0.378,0.408]	chr4	211159	1994	INTRON	INTRON	SCFD2	ENSG00000184178.17	ENST00000401642.8:ENST00000388940.8	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	2.53503	3.428385	4.32174	0.0319942	0.0132362	0.13174	0.0999551
chr4	169691152	169691244	2080590	0	+	0.391304	(0.378,0.408]	chr4	205644	1	INTRON	INTRON	CLCN3	ENSG00000109572.15	ENST00000347613.8:ENST00000360642.7:ENST00000513761.6:ENST00000613795.4:ENST00000507875.5	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	2.53503	3.428385	4.32174	0.0319942	0.0132362	0.13174	0.0999551
chr9	3527577	3527677	4092878	0	+	0.4	(0.378,0.408]	chr9	373028	4	INTRON	INTRON	RFX3-DT	ENSG00000232104.4	ENST00000691391.1:ENST00000691026.1:ENST00000423112.2	lncRNA	lncRNA	lncRNA	lncRNA	2	41	2	2.35527	3.427915	4.50056	0.015974	0.0121511	0.101453	0.0963966
chr6	3004851	3004951	2787900	0	+	0.45	(0.44,0.476]	chr6	263235	2	SS5_PROX	SS5_PROX:INTRON	NQO2	ENSG00000124588.22	ENST00000426637.5:ENST00000380472.7:ENST00000380455.11:ENST00000397717.7:ENST00000338130.7:ENST00000380441.5:ENST00000380454.8:ENST00000380430.6:ENST00000606474.1	protein_coding	protein_coding	protein_coding	protein_coding	4	105	2	2.53607	3.427765	4.31946	0.00255314	1.16666e-5	0.0449364	0.00252017
chr17	51108068	51108168	6796890	0	-	0.46	(0.44,0.476]	chr17	671024	280	INTRON	INTRON	SPAG9	ENSG00000008294.22	ENST00000262013.12:ENST00000505279.5:ENST00000357122.8	protein_coding	protein_coding	protein_coding	protein_coding	2	40	2	2.33272	3.4277100000000003	4.5227	0.0129984	0.0128818	0.0991656	0.0926667
chr1	235249866	235249964	663075	0	-	0.479592	(0.476,0.515]	chr1	78528	30	INTRON	INTRON	ARID4B	ENSG00000054267.22	ENST00000349213.7:ENST00000366603.6:ENST00000264183.9:ENST00000421364.5:ENST00000491632.5:ENST00000418304.1:ENST00000466653.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	42	2	1.79693	3.4276999999999997	5.05847	0.0649782	0.00108081	0.179417	0.0300133
chr12	50986865	50986963	5324363	0	-	0.44898	(0.44,0.476]	chr12	507639	10	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	SLC11A2	ENSG00000110911.17	ENST00000551215.5:ENST00000547688.7:ENST00000644495.1:ENST00000643884.1:ENST00000546636.5:ENST00000547198.5:ENST00000646264.1:ENST00000394904.9:ENST00000262052.9:ENST00000550782.5:ENST00000643123.1:ENST00000646740.1:ENST00000642227.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	67	2	2.9195	3.427675	3.93585	0.0102021	1.04728e-4	0.0850389	0.00863456
chr1	179956538	179956637	267453	0	+	0.333333	(0.32,0.35]	chr1	31297	10	INTRON	INTRON	CEP350	ENSG00000135837.16	ENST00000491495.2:ENST00000367607.8	protein_coding	protein_coding	protein_coding	protein_coding	4	60	2	1.72405	3.4276400000000002	5.13123	0.0275418	0.00394704	0.137011	0.0548259
chr11	998085	998182	4721833	0	+	0.587629	(0.57,1]	chr11	436726	15	INTRON	INTRON	AP2A2	ENSG00000183020.15	ENST00000332231.9:ENST00000448903.7:ENST00000529858.6:ENST00000693238.1:ENST00000687890.1:ENST00000687792.1:ENST00000528815.5:ENST00000528195.6:ENST00000525891.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	20	2	2.36411	3.42759	4.49107	0.0408868	0.00220544	0.161534	0.0417893
chr3	38485512	38485611	1400576	0	+	0.585859	(0.57,1]	chr3	146944	23	UTR3	UTR3:EXON_MRNA	ACVR2B	ENSG00000114739.14	ENST00000352511.5	protein_coding	protein_coding	protein_coding	protein_coding	1	20	2	2.36411	3.42759	4.49107	0.0408868	0.00220544	0.161534	0.0417893
chr3	186965916	186966015	1586530	0	+	0.585859	(0.57,1]	chr3	164332	16	INTRON	INTRON	ST6GAL1	ENSG00000073849.16	ENST00000676786.1:ENST00000169298.8:ENST00000457772.6:ENST00000455441.5:ENST00000427315.5:ENST00000677292.1:ENST00000458216.5:ENST00000430309.5:ENST00000417392.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	20	2	2.36411	3.42759	4.49107	0.0408868	0.00220544	0.161534	0.0417893
chr4	139027131	139027231	2049497	0	+	0.58	(0.57,1]	chr4	203265	106	INTRON	INTRON	NOCT	ENSG00000151014.6	ENST00000280614.4:ENST00000630479.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	20	2	2.36411	3.42759	4.49107	0.0408868	0.00220544	0.161534	0.0417893
chr9	33016725	33016815	4242933	0	-	0.488889	(0.476,0.515]	chr9	390005	1	INTRON	INTRON	APTX	ENSG00000137074.20	ENST00000673360.1:ENST00000436040.7:ENST00000673487.1:ENST00000467331.6:ENST00000482687.6:ENST00000485479.6:ENST00000460940.6:ENST00000673248.1:ENST00000495360.6:ENST00000672281.1:ENST00000468275.6:ENST00000473270.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	42	2	1.92984	3.4275650000000004	4.92529	0.0466474	0.00180221	0.151522	0.0392772
chr17	82257958	82258057	6852672	0	-	0.414141	(0.408,0.44]	chr17	679151	20	INTRON	INTRON	CSNK1D	ENSG00000141551.15	ENST00000398519.9:ENST00000314028.11:ENST00000581241.5:ENST00000392334.6:ENST00000403276.7:ENST00000582844.5:ENST00000580446.1:ENST00000581660.5:ENST00000578194.5:ENST00000579316.5:ENST00000584472.5:ENST00000580061.5:ENST00000585026.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	67	2	3.25948	3.42752	3.59556	0.00246454	8.33275e-4	0.0459102	0.0266389
chr19	18591606	18591703	7033310	0	+	0.43299	(0.408,0.44]	chr19	700958	8	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	REX1BD	ENSG00000006015.18	ENST00000598375.5:ENST00000450195.6:ENST00000358607.11:ENST00000600997.5:ENST00000601736.1:ENST00000597371.1:ENST00000595490.1:ENST00000595077.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	67	2	3.25948	3.42752	3.59556	0.00246454	8.33275e-4	0.0459102	0.0266389
chr1	179868704	179868803	593377	0	-	0.30303	(0.28,0.32]	chr1	71113	13	EXON_LNCRNA	EXON_LNCRNA:INTRON	TOR1AIP2	ENSG00000169905.13	ENST00000367612.7:ENST00000609928.6:ENST00000482587.5:ENST00000495650.1:ENST00000474318.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	148	2	3.12375	3.4274899999999997	3.73123	0.00104535	2.76848e-5	0.0294493	0.00415129
chr12	74539988	74540087	5173120	0	+	0.40404	(0.378,0.408]	chr12	489969	17	UTR3	UTR3:EXON_MRNA	ATXN7L3B	ENSG00000253719.4	ENST00000519948.4	protein_coding	protein_coding	protein_coding	protein_coding	3	93	2	3.16956	3.427365	3.68517	5.70211e-4	3.90172e-4	0.0220524	0.0177751
chr2	20342131	20342231	1076700	0	-	0.27	[0,0.28]	chr2	115047	87	INTRON	INTRON	PUM2	ENSG00000055917.16	ENST00000361078.7:ENST00000442400.5:ENST00000420234.5:ENST00000429419.6:ENST00000432105.5:ENST00000446940.5:ENST00000424110.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	70	2	1.74425	3.42729	5.11033	0.0287343	0.00991388	0.139835	0.0838372
chr14	55312887	55312987	5726211	0	+	0.35	(0.32,0.35]	chr14	543460	144	INTRON	INTRON	FBXO34	ENSG00000178974.11	ENST00000681400.1:ENST00000681904.1:ENST00000679934.1:ENST00000681074.1:ENST00000680682.1:ENST00000680658.1:ENST00000313833.5:ENST00000554940.1:ENST00000440021.1:ENST00000555087.1:ENST00000557647.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	32	2	2.48693	3.42724	4.36755	0.0338094	0.0300552	0.146709	0.129138
chr19	16647859	16647958	7150662	0	-	0.333333	(0.32,0.35]	chr19	722447	2	INTRON	INTRON	SMIM7	ENSG00000214046.9	ENST00000465250.6:ENST00000481671.6:ENST00000594662.5:ENST00000597781.5:ENST00000598278.5:ENST00000593409.5:ENST00000487803.5:ENST00000627144.2:ENST00000487416.7:ENST00000593404.5:ENST00000597711.5:ENST00000599310.5:ENST00000397349.6:ENST00000602194.5:ENST00000600740.5:ENST00000461488.5:ENST00000463051.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	32	2	2.48693	3.42724	4.36755	0.0338094	0.0300552	0.146709	0.129138
chr19	34280664	34280764	7051648	0	+	0.35	(0.32,0.35]	chr19	703254	147	INTRON	INTRON	GARRE1	ENSG00000166398.14	ENST00000588470.5:ENST00000299505.8:ENST00000589583.5:ENST00000588338.6:ENST00000592124.1:ENST00000585833.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	32	2	2.48693	3.42724	4.36755	0.0338094	0.0300552	0.146709	0.129138
chr22	27913048	27913144	7565808	0	-	0.34375	(0.32,0.35]	chr22	774133	16	INTRON	INTRON	PITPNB	ENSG00000180957.19	ENST00000335272.10:ENST00000320996.14:ENST00000634017.1:ENST00000415296.5:ENST00000436663.1:ENST00000460566.5:ENST00000471825.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	32	2	2.48693	3.42724	4.36755	0.0338094	0.0300552	0.146709	0.129138
chr6	8040838	8040938	3054320	0	-	0.33	(0.32,0.35]	chr6	284081	3	SS5_PROX	SS5_PROX:INTRON	BLOC1S5	ENSG00000188428.20	ENST00000397457.7:ENST00000244777.6:ENST00000627748.2:ENST00000486432.1:ENST00000543936.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	32	2	2.48693	3.42724	4.36755	0.0338094	0.0300552	0.146709	0.129138
chr6	170380094	170380194	3037099	0	+	0.34	(0.32,0.35]	chr6	283078	214	INTRON	INTRON	FAM120B	ENSG00000112584.14	ENST00000630384.2:ENST00000537664.5:ENST00000476287.4:ENST00000625626.1	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	2.48693	3.42724	4.36755	0.0338094	0.0300552	0.146709	0.129138
chr16	74360332	74360432	6523470	0	-	0.34	(0.32,0.35]	chr16	631621	3	SS5_PROX	SS5_PROX:INTRON	PDPR2P	ENSG00000214331.8	ENST00000566802.5:ENST00000563377.5:ENST00000429810.2	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:transcribed_unprocessed_pseudogene	3	53	2	2.02133	3.4271	4.83287	0.017146	0.0095071	0.111072	0.0817766
chr17	47980198	47980297	6623212	0	+	0.333333	(0.32,0.35]	chr17	646227	11	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	CDK5RAP3	ENSG00000108465.15	ENST00000536708.6:ENST00000584991.5:ENST00000584063.5:ENST00000338399.9:ENST00000585163.5:ENST00000580287.5:ENST00000580391.5:ENST00000580670.6:ENST00000584168.5:ENST00000582114.5:ENST00000583697.1:ENST00000578663.1:ENST00000582482.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	53	2	2.02133	3.4271	4.83287	0.017146	0.0095071	0.111072	0.0817766
chr10	119596841	119596935	4706037	0	-	0.617021	(0.57,1]	chr10	434256	5	UTR5	UTR5:EXON_MRNA	TIAL1	ENSG00000151923.18	ENST00000436547.7:ENST00000489822.5:ENST00000497671.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	140	2	2.59141	3.4270950000000004	4.26278	2.99487e-5	4.98289e-9	0.0043593700000000004	1.70082e-5
chr5	146225794	146225892	2514338	0	+	0.530612	(0.515,0.57]	chr5	240164	19	INTRON	INTRON	ENSG00000275740:RBM27	ENSG00000275740.1:ENSG00000091009.8	ENST00000506502.2:ENST00000265271.7	protein_coding	protein_coding	protein_coding	protein_coding	3	43	2	1.94493	3.427025	4.90912	0.0204583	0.0021669	0.122204	0.0417866
chrX	12975973	12976069	7622121	0	+	0.541667	(0.515,0.57]	chrX	780223	10	UTR5	UTR5:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TMSB4X	ENSG00000205542.11	ENST00000380636.1:ENST00000451311.7:ENST00000380635.5:ENST00000380633.1	protein_coding	protein_coding	protein_coding	protein_coding	3	43	2	1.94493	3.427025	4.90912	0.0204583	0.0021669	0.122204	0.0417866
chr11	19228056	19228156	4933895	0	-	0.37	(0.35,0.378]	chr11	462139	18	INTRON	INTRON	E2F8	ENSG00000129173.13	ENST00000527884.5:ENST00000250024.9:ENST00000620009.4	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	2.78212	3.42699	4.07186	0.0279478	0.0168532	0.137011	0.103549
chr1	51470610	51470706	453868	0	-	0.34375	(0.32,0.35]	chr1	54429	17	INTRON	INTRON	EPS15	ENSG00000085832.17	ENST00000371733.8:ENST00000371730.6:ENST00000371727.5:ENST00000471391.1:ENST00000465467.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	32	2	2.31405	3.426965	4.53988	0.0517107	0.0202178	0.176696	0.109913
chr15	55195303	55195399	6180004	0	-	0.333333	(0.32,0.35]	chr15	589094	1	EXON_LNCRNA	EXON_LNCRNA:INTRON	RSL24D1	ENSG00000137876.11	ENST00000260443.9:ENST00000569386.2:ENST00000677147.1:ENST00000562895.2:ENST00000677989.1:ENST00000677730.1:ENST00000677092.1:ENST00000562993.5:ENST00000564344.5:ENST00000565854.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	32	2	2.31405	3.426965	4.53988	0.0517107	0.0202178	0.176696	0.109913
chr17	31867945	31868045	6752565	0	-	0.33	(0.32,0.35]	chr17	663733	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	UTP6	ENSG00000108651.10	ENST00000261708.9:ENST00000581012.6:ENST00000477128.5:ENST00000579459.1:ENST00000484661.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	32	2	2.31405	3.426965	4.53988	0.0517107	0.0202178	0.176696	0.109913
chr17	81613049	81613125	6849364	0	-	0.328947	(0.32,0.35]	chr17	678220	1	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	NPLOC4	ENSG00000182446.14	ENST00000331134.11:ENST00000374747.9:ENST00000574897.5:ENST00000570324.1:ENST00000574344.5:ENST00000625705.1:ENST00000570300.1:ENST00000571562.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	32	2	2.31405	3.426965	4.53988	0.0517107	0.0202178	0.176696	0.109913
chr18	1269552	1269648	6940866	0	-	0.322917	(0.32,0.35]	chr18	686544	14	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	LINC00470	ENSG00000132204.14	ENST00000657423.1:ENST00000657618.1:ENST00000584090.5:ENST00000660947.1:ENST00000669242.1:ENST00000660475.1:ENST00000653775.1:ENST00000661931.1:ENST00000412816.7:ENST00000577867.5:ENST00000584492.5:ENST00000667416.1:ENST00000661852.1:ENST00000657919.1:ENST00000661646.1:ENST00000667776.1:ENST00000654559.1:ENST00000661233.1:ENST00000653213.1:ENST00000659094.1:ENST00000660964.1:ENST00000577403.6:ENST00000660358.1:ENST00000671645.1:ENST00000669153.1:ENST00000657121.1:ENST00000655957.1:ENST00000659289.1:ENST00000665133.1:ENST00000671558.1:ENST00000666542.1:ENST00000663512.1:ENST00000663392.1:ENST00000582862.6:ENST00000578835.5:ENST00000669312.1	lncRNA	lncRNA	lncRNA	lncRNA	1	32	2	2.31405	3.426965	4.53988	0.0517107	0.0202178	0.176696	0.109913
chr22	17665025	17665125	7475284	0	+	0.34	(0.32,0.35]	chr22	762160	88	INTRON	INTRON	BCL2L13	ENSG00000099968.18	ENST00000399781.5:ENST00000399782.5:ENST00000337612.9:ENST00000418951.6:ENST00000538149.5:ENST00000543133.5:ENST00000611738.4:ENST00000616863.4:ENST00000618481.4:ENST00000498133.5:ENST00000317582.10:ENST00000464649.1:ENST00000493680.5:ENST00000355028.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	32	2	2.31405	3.426965	4.53988	0.0517107	0.0202178	0.176696	0.109913
chr10	30338626	30338725	4587536	0	-	0.343434	(0.32,0.35]	chr10	422975	12	INTRON	INTRON	MTPAP	ENSG00000107951.15	ENST00000263063.9:ENST00000488290.5:ENST00000417581.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	75	2	3.31533	3.426935	3.53854	0.00323121	9.09596e-4	0.0507087	0.0277043
chr22	49792444	49792543	7602865	0	-	0.626263	(0.57,1]	chr22	778629	42	INTRON	INTRON	BRD1	ENSG00000100425.19	ENST00000404760.6:ENST00000404034.5:ENST00000216267.12:ENST00000438393.5:ENST00000457780.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	35	2	1.87901	3.426795	4.97458	0.0152867	2.67728e-4	0.108569	0.0149989
chr18	185598	185697	6855100	0	+	0.262626	[0,0.28]	chr18	679521	49	INTRON	INTRON	USP14	ENSG00000101557.15	ENST00000582707.5:ENST00000400266.7:ENST00000261601.8:ENST00000578942.5:ENST00000383589.6:ENST00000583119.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	92	2	3.18358	3.4266449999999997	3.66971	0.00694532	7.51669e-4	0.0718189	0.0251578
chr1	211662771	211662864	630386	0	-	0.301075	(0.28,0.32]	chr1	74574	1	UTR3	UTR3:EXON_MRNA:INTRON	NEK2	ENSG00000117650.13	ENST00000540251.5:ENST00000366999.9	protein_coding	protein_coding	protein_coding	protein_coding	2	46	2	2.1895	3.426545	4.66359	0.0227063	0.0193496	0.124921	0.108861
chr3	195281391	195281473	1894267	0	-	0.280488	(0.28,0.32]	chr3	189544	2	INTRON	INTRON	ACAP2:ACAP2-IT1	ENSG00000114331.16:ENSG00000229325.1	ENST00000326793.11:ENST00000419899.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	2	46	2	2.1895	3.426545	4.66359	0.0227063	0.0193496	0.124921	0.108861
chr7	139403046	139403146	3438030	0	+	0.32	(0.28,0.32]	chr7	320353	4	INTRON	INTRON	LUC7L2:FMC1-LUC7L2	ENSG00000146963.18:ENSG00000269955.2	ENST00000541170.7:ENST00000541515.3:ENST00000619796.4:ENST00000354926.9:ENST00000456182.5:ENST00000263545.7:ENST00000463912.5:ENST00000498518.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	46	2	2.1895	3.426545	4.66359	0.0227063	0.0193496	0.124921	0.108861
chr7	10741497	10741597	3484195	0	-	0.36	(0.35,0.378]	chr7	325772	1796	INTRON	INTRON	MGC4859	ENSG00000283117.1	ENST00000634803.1	lncRNA	lncRNA	lncRNA	lncRNA	4	57	2	1.64283	3.426505	5.21018	0.034896	0.00228003	0.148998	0.0426265
chr11	46843722	46843822	4948741	0	-	0.29	(0.28,0.32]	chr11	463857	170	INTRON	INTRON	CKAP5	ENSG00000175216.15	ENST00000529230.6:ENST00000312055.9:ENST00000525248.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	133	2	2.45547	3.426495	4.39752	0.00495986	1.48497e-5	0.0615009	0.00289599
chr17	67910318	67910376	6668565	0	+	0.413793	(0.408,0.44]	chr17	650606	2	INTRON	INTRON	BPTF	ENSG00000171634.19	ENST00000306378.11:ENST00000544778.6:ENST00000321892.8:ENST00000342579.8:ENST00000644067.1:ENST00000424123.7	protein_coding	protein_coding	protein_coding	protein_coding	3	89	2	2.6117	3.426365	4.24103	0.00555224	1.8653e-5	0.0648867	0.00329969
chr17	62595486	62595586	6654072	0	+	0.38	(0.378,0.408]	chr17	649417	89	INTRON	INTRON	TLK2	ENSG00000146872.19	ENST00000582809.5:ENST00000682085.1:ENST00000346027.10:ENST00000326270.13:ENST00000682203.1:ENST00000343388.11:ENST00000683536.1:ENST00000684440.1:ENST00000684772.1:ENST00000682274.1:ENST00000682827.1:ENST00000682075.1:ENST00000683104.1:ENST00000684012.1:ENST00000581041.5:ENST00000684553.1:ENST00000683737.1:ENST00000684133.1:ENST00000582660.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	40	2	2.04292	3.4263000000000003	4.80968	0.0326035	0.00679828	0.145164	0.0711802
chr9	137635905	137636005	4223641	0	+	0.4	(0.378,0.408]	chr9	388152	155	INTRON	INTRON	EHMT1	ENSG00000181090.21	ENST00000462484.5:ENST00000371394.6:ENST00000630754.2:ENST00000460843.6:ENST00000626216.2:ENST00000637593.1:ENST00000629335.2:ENST00000637335.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	40	2	2.04292	3.4263000000000003	4.80968	0.0326035	0.00679828	0.145164	0.0711802
chrX	104185565	104185665	7698137	0	+	0.36	(0.35,0.378]	chrX	787763	1	SS3_PROX	SS3_PROX:INTRON	FAM199X	ENSG00000123575.9	ENST00000493442.2	protein_coding	protein_coding	protein_coding	protein_coding	3	94	2	3.14947	3.426215	3.70296	6.20319e-4	4.50721e-4	0.0229151	0.0192381
chr1	2258553	2258653	2469	0	+	0.49	(0.476,0.515]	chr1	557	101	INTRON	INTRON	SKI	ENSG00000157933.10	ENST00000378536.5:ENST00000508416.1:ENST00000478223.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	58	2	1.4553	3.4261950000000003	5.39709	0.0623645	2.55871e-4	0.175357	0.0142249
chr12	123344857	123344957	5445003	0	-	0.35	(0.32,0.35]	chr12	521098	2	SS5_PROX	SS5_PROX:INTRON	SBNO1	ENSG00000139697.14	ENST00000602398.3:ENST00000267176.8:ENST00000420886.6	protein_coding	protein_coding	protein_coding	protein_coding	3	52	2	1.83315	3.42616	5.01917	0.0313348	0.0055659	0.144381	0.0648867
chr11	5505576	5505652	4898279	0	-	0.539474	(0.515,0.57]	chr11	459198	4	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	HBG2:ENSG00000239920:HBE1:OR51B5	ENSG00000196565.15:ENSG00000239920.2:ENSG00000213931.7:ENSG00000167355.8	ENST00000380252.6:ENST00000380259.7:ENST00000292896.3:ENST00000380237.5:ENST00000420726.6:ENST00000420465.6:ENST00000415970.6:ENST00000418729.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:nonsense_mediated_decay:processed_transcript	17	384	2	3.41572	3.42612	3.43652	1.32417e-7	7.34963e-8	1.73012e-4	1.17561e-4
chr2	224546416	224546516	1335949	0	-	0.4	(0.378,0.408]	chr2	140151	104	INTRON	INTRON	CUL3	ENSG00000036257.14	ENST00000344951.8:ENST00000264414.9:ENST00000409096.5:ENST00000409777.5:ENST00000432260.2:ENST00000436172.1:ENST00000546102.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	52	2	2.35168	3.42612	4.50056	0.015974	0.0046563	0.101453	0.0629753
chr20	35706421	35706520	7336174	0	-	0.282828	(0.28,0.32]	chr20	747400	7	INTRON	INTRON	RBM39	ENSG00000131051.24	ENST00000253363.11:ENST00000639702.1:ENST00000656873.1:ENST00000463004.5:ENST00000361162.10:ENST00000461283.5:ENST00000403542.6:ENST00000338163.10:ENST00000528062.7:ENST00000429968.5:ENST00000444878.5:ENST00000665058.1:ENST00000476806.5:ENST00000495293.5:ENST00000492779.5:ENST00000482563.1:ENST00000496183.5:ENST00000465158.5:ENST00000448303.5:ENST00000470563.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	49	2	2.51426	3.425955	4.33765	0.039714	0.00781326	0.143072	0.0788246
chr8	30801446	30801545	3933037	0	-	0.525253	(0.515,0.57]	chr8	360326	13	INTRON	INTRON	PPP2CB	ENSG00000104695.13	ENST00000221138.9:ENST00000518564.1:ENST00000518243.5:ENST00000520056.1:ENST00000520500.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	120	2	2.90111	3.4259250000000003	3.95074	3.57078e-4	2.488e-6	0.0175154	0.00100001
chr7	66805896	66805992	3326141	0	+	0.5	(0.476,0.515]	chr7	309304	1	INTRON	INTRON	RABGEF1	ENSG00000154710.18	ENST00000607882.5:ENST00000284957.9:ENST00000450873.6:ENST00000439720.3:ENST00000484547.7:ENST00000461017.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	86	2	3.11021	3.4258249999999997	3.74144	5.02606e-4	4.08784e-4	0.020217099999999998	0.0185763
chr1	45565469	45565569	93138	0	+	0.52	(0.515,0.57]	chr1	12522	32	INTRON	INTRON	AKR1A1	ENSG00000117448.14	ENST00000372070.7:ENST00000621846.4:ENST00000434299.5:ENST00000351829.9:ENST00000496999.5:ENST00000476957.5:ENST00000481885.5:ENST00000471651.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	50	2	1.94248	3.4257999999999997	4.90912	0.0115668	0.0021669	0.0962115	0.0417866
chr7	135563310	135563410	3428370	0	+	0.53	(0.515,0.57]	chr7	319623	47	INTRON	INTRON	NUP205	ENSG00000155561.15	ENST00000285968.11:ENST00000489493.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	50	2	1.94248	3.4257999999999997	4.90912	0.0115668	0.0021669	0.0962115	0.0417866
chr3	42601263	42601362	1405977	0	+	0.575758	(0.57,1]	chr3	147650	3	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	NKTR	ENSG00000114857.19	ENST00000468735.6:ENST00000460910.5:ENST00000487466.5:ENST00000429888.5:ENST00000232978.13:ENST00000459950.1:ENST00000442970.5:ENST00000445842.1:ENST00000478488.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	84	2	2.98769	3.42578	3.86387	3.79135e-5	2.27963e-6	0.00525207	9.46989e-4
chr1	50958471	50958571	452238	0	-	0.51	(0.476,0.515]	chr1	54267	1001	INTRON	INTRON	FAF1	ENSG00000185104.21	ENST00000396153.7:ENST00000487898.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	32	2	2.63168	3.4256599999999997	4.21964	0.0237106	0.0167715	0.118716	0.110511
chr14	102631111	102631211	5822918	0	+	0.5	(0.476,0.515]	chr14	552490	374	INTRON	INTRON	RCOR1	ENSG00000089902.10	ENST00000262241.7	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	2.63168	3.4256599999999997	4.21964	0.0237106	0.0167715	0.118716	0.110511
chr14	39178503	39178590	5700113	0	+	0.321839	(0.32,0.35]	chr14	541897	2	INTRON	INTRON	PNN	ENSG00000100941.9	ENST00000553331.5:ENST00000216832.9	protein_coding	protein_coding	protein_coding	protein_coding	1	37	2	2.68921	3.425535	4.16186	0.026079	0.0230336	0.133676	0.118056
chr20	49633043	49633142	7352807	0	-	0.333333	(0.32,0.35]	chr20	749799	2	UTR3	UTR3:EXON_MRNA	B4GALT5	ENSG00000158470.5	ENST00000371711.4	protein_coding	protein_coding	protein_coding	protein_coding	1	37	2	2.68921	3.425535	4.16186	0.026079	0.0230336	0.133676	0.118056
chr1	77979719	77979819	148571	0	+	0.3	(0.28,0.32]	chr1	16564	1	SS5_PROX	SS5_PROX:INTRON	DNAJB4	ENSG00000162616.9	ENST00000487931.1:ENST00000477671.2:ENST00000484662.1	protein_coding	processed_transcript	protein_coding	processed_transcript	1	37	2	2.32871	3.42552	4.52233	0.0581621	0.0129279	0.167723	0.0990564
chr10	120862449	120862544	4531456	0	+	0.305263	(0.28,0.32]	chr10	418097	1	EXON_LNCRNA	EXON_LNCRNA:SS3_PROX:INTRON	WDR11	ENSG00000120008.16	ENST00000263461.11:ENST00000605543.5:ENST00000605069.5:ENST00000605178.5:ENST00000604585.5:ENST00000497136.6:ENST00000462529.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	37	2	2.32871	3.42552	4.52233	0.0581621	0.0129279	0.167723	0.0990564
chr18	743515	743615	6940010	0	-	0.31	(0.28,0.32]	chr18	686482	1	SS3_PROX	SS3_PROX:INTRON	YES1	ENSG00000176105.14	ENST00000584307.5:ENST00000314574.5:ENST00000577961.5	protein_coding	protein_coding	protein_coding	protein_coding	1	37	2	2.32871	3.42552	4.52233	0.0581621	0.0129279	0.167723	0.0990564
chr18	13047963	13048062	6877153	0	+	0.292929	(0.28,0.32]	chr18	681428	53	INTRON	INTRON	CEP192	ENSG00000101639.19	ENST00000325971.12:ENST00000506447.5:ENST00000589596.5:ENST00000513432.5:ENST00000511820.6:ENST00000510237.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	37	2	2.32871	3.42552	4.52233	0.0581621	0.0129279	0.167723	0.0990564
chr10	48357320	48357420	4431496	0	+	0.34	(0.32,0.35]	chr10	408569	310	INTRON	INTRON	MAPK8	ENSG00000107643.17	ENST00000395611.7:ENST00000432379.5:ENST00000374189.6:ENST00000429041.6:ENST00000374179.8:ENST00000426557.5:ENST00000476134.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	43	2	2.01768	3.425275	4.83287	0.0361337	0.0095071	0.152563	0.0817766
chr2	152703589	152703688	1246385	0	-	0.333333	(0.32,0.35]	chr2	132360	86	INTRON	INTRON	PRPF40A	ENSG00000196504.20	ENST00000410080.8:ENST00000545856.8:ENST00000696382.1:ENST00000696381.1:ENST00000354363.11:ENST00000493468.7:ENST00000448428.2:ENST00000489741.1:ENST00000450303.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	43	2	2.01768	3.425275	4.83287	0.0361337	0.0095071	0.152563	0.0817766
chr8	30810661	30810758	3933130	0	-	0.329897	(0.32,0.35]	chr8	360330	5	INTRON	INTRON	PPP2CB	ENSG00000104695.13	ENST00000221138.9:ENST00000518564.1:ENST00000518243.5:ENST00000520500.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	43	2	2.01768	3.425275	4.83287	0.0361337	0.0095071	0.152563	0.0817766
chr1	246920769	246920868	681851	0	-	0.434343	(0.408,0.44]	chr1	80043	20	INTRON	INTRON	AHCTF1	ENSG00000153207.16	ENST00000648844.2:ENST00000326225.3:ENST00000366508.5	protein_coding	protein_coding	protein_coding	protein_coding	6	160	2	3.23361	3.4252200000000004	3.61683	5.47818e-5	1.44305e-5	0.00651589	0.00284474
chr7	23392388	23392487	3502880	0	-	0.222222	[0,0.28]	chr7	326877	294	INTRON	INTRON	IGF2BP3	ENSG00000136231.14	ENST00000258729.8:ENST00000421467.6:ENST00000468263.5:ENST00000492771.5:ENST00000479504.5:ENST00000466809.6:ENST00000491719.5:ENST00000465058.5:ENST00000469723.5:ENST00000474105.5:ENST00000476938.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	171	2	2.7808	3.42522	4.06964	4.59647e-4	2.7785e-4	0.0194314	0.0152952
chr1	28915772	28915872	58968	0	+	0.34	(0.32,0.35]	chr1	7621	6	INTRON	INTRON	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000647918.1:ENST00000646800.1:ENST00000644342.1:ENST00000646189.1:ENST00000482464.6:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000646260.1:ENST00000373798.5:ENST00000644600.1:ENST00000649674.1:ENST00000643173.1:ENST00000343067.9:ENST00000644780.1:ENST00000650265.1:ENST00000648181.1:ENST00000643604.1:ENST00000648891.1:ENST00000373797.2:ENST00000349460.9:ENST00000645184.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	43	2	1.95271	3.425195	4.89768	0.0431213	0.00793135	0.162255	0.076155
chr8	11866501	11866601	3908849	0	-	0.59	(0.57,1]	chr8	358232	3	SS3_PROX	SS3_PROX:INTRON	CTSB	ENSG00000164733.22	ENST00000677671.1:ENST00000678092.1:ENST00000679128.1:ENST00000677873.1:ENST00000676691.1:ENST00000678598.1:ENST00000353047.11:ENST00000677650.1:ENST00000526481.7:ENST00000676825.1:ENST00000678242.1:ENST00000677366.1:ENST00000677544.1:ENST00000530640.7:ENST00000677418.1:ENST00000677047.1:ENST00000676502.1:ENST00000531089.6:ENST00000678629.1:ENST00000678145.1:ENST00000678929.1:ENST00000677819.1:ENST00000677415.1:ENST00000678357.1:ENST00000676755.1:ENST00000679051.1:ENST00000453527.7:ENST00000678067.1:ENST00000679140.1:ENST00000677082.1:ENST00000533455.6:ENST00000531551.5:ENST00000534382.6:ENST00000679214.1:ENST00000531502.6:ENST00000534510.6:ENST00000677865.1:ENST00000533572.6:ENST00000345125.8:ENST00000526645.6:ENST00000534149.6:ENST00000505496.7:ENST00000532392.2:ENST00000676843.1:ENST00000524500.6:ENST00000525076.6:ENST00000527215.7:ENST00000528965.2:ENST00000532656.7:ENST00000526195.6:ENST00000527243.6:ENST00000530296.6:ENST00000534636.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	26	2	2.05026	3.425185	4.80011	0.0321326	6.07135e-4	0.145026	0.0226059
chr16	85804341	85804440	6416687	0	+	0.434343	(0.408,0.44]	chr16	615587	14	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	COX4I1	ENSG00000131143.10	ENST00000565078.5:ENST00000570123.5:ENST00000568339.5:ENST00000566115.5:ENST00000567241.5:ENST00000568794.5:ENST00000562336.5:ENST00000253452.8:ENST00000563774.1:ENST00000561569.5:ENST00000567266.5:ENST00000566405.5:ENST00000564544.1:ENST00000566617.1:ENST00000564903.1:ENST00000564648.1:ENST00000569997.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	40	2	2.33431	3.4251750000000003	4.51604	0.0137419	0.0129219	0.0990564	0.0949306
chr7	4704656	4704756	3270139	0	+	0.42	(0.408,0.44]	chr7	303884	214	INTRON	INTRON	FOXK1	ENSG00000164916.11	ENST00000328914.5	protein_coding	protein_coding	protein_coding	protein_coding	2	40	2	2.33431	3.4251750000000003	4.51604	0.0137419	0.0129219	0.0990564	0.0949306
chr6	159785589	159785683	3254660	0	-	0.393617	(0.378,0.408]	chr6	302535	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TCP1	ENSG00000120438.12	ENST00000321394.12:ENST00000544255.5:ENST00000420894.6:ENST00000392168.6:ENST00000539756.1:ENST00000543532.5:ENST00000538530.5:ENST00000467544.2:ENST00000538128.5:ENST00000543517.5:ENST00000539948.5:ENST00000545764.1:ENST00000537390.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	44	2	2.00398	3.4251249999999995	4.84627	0.0393906	0.00254319	0.143072	0.0465056
chr12	110303525	110303625	5226325	0	+	0.49	(0.476,0.515]	chr12	495250	64	INTRON	INTRON	ATP2A2	ENSG00000174437.18	ENST00000308664.10:ENST00000539276.7:ENST00000377685.9:ENST00000548169.2:ENST00000550248.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	40	2	2.32001	3.42512	4.53023	0.0136217	0.0119748	0.101682	0.0899583
chr19	316041	316141	7109316	0	-	0.34	(0.32,0.35]	chr19	713786	20	INTRON	INTRON	MIER2	ENSG00000105556.12	ENST00000264819.7	protein_coding	protein_coding	protein_coding	protein_coding	2	75	2	3.16237	3.42506	3.68775	0.00550276	4.66127e-4	0.0648867	0.0195589
chr15	43093776	43093876	6160574	0	-	0.32	(0.28,0.32]	chr15	586591	13	INTRON	INTRON	UBR1	ENSG00000159459.12	ENST00000290650.9:ENST00000546274.6:ENST00000563239.1:ENST00000569337.1:ENST00000627960.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	34	2	2.60656	3.42488	4.2432	0.0479043	0.0256827	0.153019	0.133676
chr2	73942420	73942520	811605	0	+	0.29	(0.28,0.32]	chr2	90798	30	INTRON	INTRON	DGUOK	ENSG00000114956.20	ENST00000348222.3:ENST00000629438.2:ENST00000418996.5:ENST00000264093.9:ENST00000462551.1:ENST00000489796.5:ENST00000462685.1:ENST00000493055.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	34	2	2.60656	3.42488	4.2432	0.0479043	0.0256827	0.153019	0.133676
chr21	10438854	10438954	7368383	0	+	0.31	(0.28,0.32]	chr21	751975	236	INTRON	INTRON	BAGE2	ENSG00000187172.15	ENST00000474011.5:ENST00000470054.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	1	34	2	2.60656	3.42488	4.2432	0.0479043	0.0256827	0.153019	0.133676
chr4	73188718	73188818	2160125	0	-	0.29	(0.28,0.32]	chr4	212794	108	INTRON	INTRON	ANKRD17	ENSG00000132466.20	ENST00000358602.9:ENST00000558247.5:ENST00000330838.10:ENST00000509867.6:ENST00000561029.1:ENST00000559367.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	34	2	2.60656	3.42488	4.2432	0.0479043	0.0256827	0.153019	0.133676
chr5	126985144	126985244	2714104	0	-	0.31	(0.28,0.32]	chr5	255278	384	INTRON	INTRON	MARCHF3	ENSG00000173926.6	ENST00000308660.6:ENST00000502289.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	34	2	2.60656	3.42488	4.2432	0.0479043	0.0256827	0.153019	0.133676
chr6	42648170	42648270	2865927	0	+	0.31	(0.28,0.32]	chr6	271139	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	UBR2	ENSG00000024048.11	ENST00000372899.6:ENST00000372901.2	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	2.60656	3.42488	4.2432	0.0479043	0.0256827	0.153019	0.133676
chr7	127833936	127834036	3404230	0	+	0.3	(0.28,0.32]	chr7	318140	260	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000468166.5:ENST00000465900.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	34	2	2.60656	3.42488	4.2432	0.0479043	0.0256827	0.153019	0.133676
chr7	129032456	129032556	3636356	0	-	0.3	(0.28,0.32]	chr7	338142	139	INTRON	INTRON	TNPO3	ENSG00000064419.14	ENST00000627585.2:ENST00000265388.10:ENST00000471234.5:ENST00000482320.5:ENST00000471166.1	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	2.60656	3.42488	4.2432	0.0479043	0.0256827	0.153019	0.133676
chr1	1766045	1766145	361612	0	-	0.5	(0.476,0.515]	chr1	42219	2	INTRON	INTRON	NADK	ENSG00000008130.15	ENST00000378625.5:ENST00000341991.7:ENST00000341426.9:ENST00000492845.6:ENST00000492768.5:ENST00000460602.5:ENST00000464373.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	104	2	2.69104	3.42487	4.1587	9.94264e-4	5.17145e-5	0.0290397	0.00625679
chr5	10232124	10232224	2566971	0	-	0.48	(0.476,0.515]	chr5	246028	41	INTRON	INTRON	ATPSCKMT	ENSG00000150756.14	ENST00000511437.6:ENST00000280330.12:ENST00000510047.5:ENST00000504390.5:ENST00000510052.5:ENST00000506108.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	104	2	2.69104	3.42487	4.1587	9.94264e-4	5.17145e-5	0.0290397	0.00625679
chr5	139625357	139625457	2501153	0	+	0.53	(0.515,0.57]	chr5	239054	15	INTRON	INTRON	UBE2D2	ENSG00000131508.16	ENST00000511725.5:ENST00000398733.8:ENST00000398734.8:ENST00000505548.5:ENST00000253815.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	49	2	1.62814	3.424775	5.22141	0.035203	6.44141e-4	0.150193	0.0231685
chr17	46131432	46131532	6784250	0	-	0.38	(0.378,0.408]	chr17	669216	102	INTRON	INTRON	KANSL1	ENSG00000120071.15	ENST00000574590.6:ENST00000572904.6:ENST00000432791.7:ENST00000575318.6:ENST00000638275.1:ENST00000262419.10:ENST00000648792.1:ENST00000639531.1:ENST00000639150.1:ENST00000639853.1:ENST00000571698.2:ENST00000639375.1:ENST00000638269.1:ENST00000576248.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	40	2	2.11103	3.42471	4.73839	0.0266911	0.00837252	0.134419	0.0774402
chr12	120198357	120198455	5433282	0	-	0.367347	(0.35,0.378]	chr12	519354	1	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	RPLP0	ENSG00000089157.16	ENST00000392514.9:ENST00000551150.5:ENST00000546989.5:ENST00000313104.9:ENST00000228306.8:ENST00000552461.5:ENST00000549098.5:ENST00000551258.5:ENST00000546990.5:ENST00000547211.5:ENST00000547475.5:ENST00000547173.5:ENST00000550856.5:ENST00000548568.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	376	2	3.19576	3.424645	3.65353	3.31404e-6	1.03595e-6	0.00128875	5.84056e-4
chr11	67180629	67180717	4813064	0	+	0.431818	(0.408,0.44]	chr11	448123	3	SS5_PROX	SS5_PROX:INTRON	KDM2A	ENSG00000173120.15	ENST00000529006.7:ENST00000398645.6:ENST00000308783.9	protein_coding	protein_coding	protein_coding	protein_coding	3	87	2	3.09037	3.424595	3.75882	5.47766e-4	4.04678e-4	0.0212924	0.0185763
chr20	50744068	50744167	7286801	0	+	0.40404	(0.378,0.408]	chr20	741301	56	INTRON	INTRON	PARD6B	ENSG00000124171.9	ENST00000371610.7:ENST00000396039.1	protein_coding	protein_coding	protein_coding	protein_coding	2	40	2	1.97143	3.424525	4.87762	0.0398704	0.00553849	0.161534	0.0648867
chr4	17930112	17930211	2117374	0	-	0.40404	(0.378,0.408]	chr4	209129	204	INTRON	INTRON	LCORL	ENSG00000178177.17	ENST00000635767.2:ENST00000326877.8:ENST00000675131.1:ENST00000675143.1:ENST00000637787.1:ENST00000675605.1:ENST00000510451.5:ENST00000510121.5:ENST00000675927.1:ENST00000382224.5:ENST00000382226.5:ENST00000676061.1:ENST00000674942.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	40	2	1.97143	3.424525	4.87762	0.0398704	0.00553849	0.161534	0.0648867
chr8	27828698	27828796	3927241	0	-	0.387755	(0.378,0.408]	chr8	359605	1	INTRON	INTRON	PBK	ENSG00000168078.10	ENST00000301905.9:ENST00000522944.5:ENST00000524266.1:ENST00000521226.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	40	2	1.97143	3.424525	4.87762	0.0398704	0.00553849	0.161534	0.0648867
chr16	1847455	1847555	6430101	0	-	0.44	(0.408,0.44]	chr16	618357	21	INTRON	INTRON	MEIOB	ENSG00000162039.17	ENST00000325962.9:ENST00000470044.5:ENST00000397344.7:ENST00000496541.6	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	2.51492	3.42446	4.334	0.0329839	0.011982	0.133816	0.0962115
chr3	14414215	14414315	1369508	0	+	0.44	(0.408,0.44]	chr3	144312	30	INTRON	INTRON	SLC6A6	ENSG00000131389.18	ENST00000613060.4:ENST00000618278.4:ENST00000610642.4:ENST00000649500.1:ENST00000622186.5:ENST00000621751.4:ENST00000613930.4:ENST00000622176.4:ENST00000615188.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	32	2	2.51492	3.42446	4.334	0.0329839	0.011982	0.133816	0.0962115
chr7	5230534	5230634	3272382	0	+	0.43	(0.408,0.44]	chr7	304155	3	SS3_PROX	SS3_PROX:INTRON	WIPI2	ENSG00000157954.15	ENST00000401525.7:ENST00000288828.9:ENST00000404704.7:ENST00000466014.5:ENST00000382384.6:ENST00000484262.1:ENST00000471851.1:ENST00000479690.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	32	2	2.51492	3.42446	4.334	0.0329839	0.011982	0.133816	0.0962115
chr13	27254558	27254649	5459406	0	+	0.461538	(0.44,0.476]	chr13	523095	2	SS5_PROX	SS5_PROX:INTRON	RPL21	ENSG00000122026.11	ENST00000311549.11:ENST00000461690.5:ENST00000272274.8:ENST00000319826.8:ENST00000326092.8:ENST00000493317.1:ENST00000483765.5:ENST00000466550.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	109	2	1.01577	3.424425	5.83308	0.0708219	2.77366e-5	0.184571	0.00415129
chr1	65566204	65566303	138649	0	+	0.484848	(0.476,0.515]	chr1	15506	2	INTRON	INTRON	LEPR	ENSG00000116678.20	ENST00000371060.7:ENST00000371059.7:ENST00000349533.11:ENST00000616738.4:ENST00000344610.12:ENST00000462765.5:ENST00000371058.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	31	2	2.23335	3.42427	4.61519	0.0634557	0.00528365	0.177047	0.0656295
chr3	48071383	48071483	1687325	0	-	0.49	(0.476,0.515]	chr3	172280	551	INTRON	INTRON	MAP4	ENSG00000047849.22	ENST00000395734.7:ENST00000426837.6:ENST00000360240.10:ENST00000423088.5:ENST00000439356.2:ENST00000468075.2	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	2.23335	3.42427	4.61519	0.0634557	0.00528365	0.177047	0.0656295
chr6	33648209	33648308	2847548	0	+	0.494949	(0.476,0.515]	chr6	268791	73	INTRON	INTRON	ITPR3	ENSG00000096433.11	ENST00000374316.9:ENST00000605930.3	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	2.23335	3.42427	4.61519	0.0634557	0.00528365	0.177047	0.0656295
chr6	36544794	36544894	3089357	0	-	0.49	(0.476,0.515]	chr6	288986	42	INTRON	INTRON	STK38	ENSG00000112079.9	ENST00000229812.8	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	2.23335	3.42427	4.61519	0.0634557	0.00528365	0.177047	0.0656295
chr9	34013809	34013906	4245496	0	-	0.484536	(0.476,0.515]	chr9	390480	18	INTRON	INTRON	UBAP2	ENSG00000137073.24	ENST00000379238.7:ENST00000683659.1:ENST00000682239.1:ENST00000683140.1:ENST00000682209.1:ENST00000681980.1:ENST00000360802.6:ENST00000683252.1:ENST00000684158.1:ENST00000682914.1:ENST00000683717.1:ENST00000379239.9:ENST00000683084.1:ENST00000684754.1:ENST00000629575.2:ENST00000684298.1:ENST00000412543.6:ENST00000480885.5:ENST00000459988.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	31	2	2.23335	3.42427	4.61519	0.0634557	0.00528365	0.177047	0.0656295
chr2	95939315	95939415	1179200	0	-	0.38	(0.378,0.408]	chr2	126014	3	SS3_PROX	SS3_PROX:INTRON	ANKRD36C	ENSG00000174501.15	ENST00000295246.7:ENST00000456556.5:ENST00000534304.5:ENST00000528268.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	61	2	1.56313	3.42417	5.28521	0.0474151	4.52877e-4	0.153019	0.0192381
chr12	46431335	46431435	5125009	0	+	0.49	(0.476,0.515]	chr12	483428	187	INTRON	INTRON	ENSG00000257261	ENSG00000257261.7	ENST00000687751.1:ENST00000667191.1:ENST00000663959.1:ENST00000666025.1:ENST00000611243.2:ENST00000666942.1:ENST00000551503.5:ENST00000657145.1	lncRNA	lncRNA	lncRNA	lncRNA	1	31	2	2.3223	3.42415	4.526	0.0519312	0.00699701	0.159306	0.0754576
chr16	8937325	8937424	6442491	0	-	0.494949	(0.476,0.515]	chr16	620589	7	INTRON	INTRON	USP7	ENSG00000187555.16	ENST00000673704.1:ENST00000344836.9:ENST00000563961.5:ENST00000563085.5:ENST00000542333.5:ENST00000566004.5:ENST00000569230.5:ENST00000566273.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	31	2	2.3223	3.42415	4.526	0.0519312	0.00699701	0.159306	0.0754576
chr19	36226058	36226157	7057534	0	+	0.494949	(0.476,0.515]	chr19	704664	75	INTRON	INTRON	ZNF146	ENSG00000167635.12	ENST00000456324.5:ENST00000591063.5:ENST00000443387.3:ENST00000586094.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	31	2	2.3223	3.42415	4.526	0.0519312	0.00699701	0.159306	0.0754576
chr22	30970406	30970504	7501263	0	+	0.489796	(0.476,0.515]	chr22	765293	7	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	TUG1	ENSG00000253352.10	ENST00000646021.1:ENST00000646496.1:ENST00000644773.2:ENST00000569384.2:ENST00000643920.1:ENST00000602971.2:ENST00000519077.4:ENST00000643280.1:ENST00000643877.1:ENST00000643071.1:ENST00000540687.6:ENST00000644027.1:ENST00000647354.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	31	2	2.3223	3.42415	4.526	0.0519312	0.00699701	0.159306	0.0754576
chr3	179242315	179242413	1878076	0	-	0.5	(0.476,0.515]	chr3	187599	24	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	KCNMB3	ENSG00000171121.17	ENST00000485523.5:ENST00000486944.2:ENST00000497599.5:ENST00000392686.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	31	2	2.3223	3.42415	4.526	0.0519312	0.00699701	0.159306	0.0754576
chr15	92978483	92978558	6104505	0	+	0.4	(0.378,0.408]	chr15	581529	1	SS5_PROX	SS5_PROX:INTRON	CHD2	ENSG00000173575.22	ENST00000626874.2:ENST00000394196.9:ENST00000635856.1:ENST00000637572.1:ENST00000636881.1:ENST00000628118.1:ENST00000625463.1:ENST00000636306.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	30	2	2.63247	3.4240500000000003	4.21563	0.0315429	0.0215745	0.13151	0.123836
chr17	13004298	13004393	6726344	0	-	0.389474	(0.378,0.408]	chr17	660073	3	INTRON	INTRON	ELAC2	ENSG00000006744.19	ENST00000338034.9:ENST00000484122.5:ENST00000480891.5:ENST00000395962.6:ENST00000426905.7:ENST00000584650.5:ENST00000446899.5:ENST00000609345.1:ENST00000609101.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	30	2	2.63247	3.4240500000000003	4.21563	0.0315429	0.0215745	0.13151	0.123836
chr18	12958887	12958987	6876267	0	+	0.4	(0.378,0.408]	chr18	681283	29	INTRON	INTRON	SEH1L	ENSG00000085415.16	ENST00000262124.15:ENST00000399892.7:ENST00000585730.5:ENST00000589446.5:ENST00000587761.1:ENST00000588251.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	30	2	2.63247	3.4240500000000003	4.21563	0.0315429	0.0215745	0.13151	0.123836
chr2	175961773	175961873	1272793	0	-	0.39	(0.378,0.408]	chr2	134550	137	INTRON	INTRON	LNPK	ENSG00000144320.14	ENST00000272748.9:ENST00000544803.5:ENST00000409660.5	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	2.63247	3.4240500000000003	4.21563	0.0315429	0.0215745	0.13151	0.123836
chr5	7896052	7896152	2316967	0	+	0.39	(0.378,0.408]	chr5	224476	2	SS5_PROX	SS5_PROX:INTRON	MTRR	ENSG00000124275.15	ENST00000264668.6:ENST00000513439.5:ENST00000511461.5:ENST00000440940.7:ENST00000510525.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	30	2	2.63247	3.4240500000000003	4.21563	0.0315429	0.0215745	0.13151	0.123836
chr8	99304541	99304641	3814197	0	+	0.39	(0.378,0.408]	chr8	353192	289	INTRON	INTRON	VPS13B	ENSG00000132549.20	ENST00000496144.5:ENST00000683334.1:ENST00000357162.7:ENST00000358544.7:ENST00000683619.1:ENST00000683869.1:ENST00000682153.1:ENST00000682358.1:ENST00000682145.1:ENST00000355155.6:ENST00000682234.1:ENST00000683486.1:ENST00000522802.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	30	2	2.63247	3.4240500000000003	4.21563	0.0315429	0.0215745	0.13151	0.123836
chr1	50913682	50913782	451790	0	-	0.31	(0.28,0.32]	chr1	54267	553	INTRON	INTRON	FAF1	ENSG00000185104.21	ENST00000396153.7:ENST00000487898.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	81	2	3.30263	3.4238850000000003	3.54514	0.0038504	0.00100603	0.0542786	0.0292285
chr3	15851781	15851881	1624365	0	-	0.31	(0.28,0.32]	chr3	168034	371	INTRON	INTRON	ANKRD28	ENSG00000206560.12	ENST00000399451.6:ENST00000412318.5:ENST00000439830.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	47	2	2.33771	3.4237599999999997	4.50981	0.0275554	0.0142701	0.123904	0.103838
chr3	43546519	43546619	1674679	0	-	0.31	(0.28,0.32]	chr3	170972	1134	INTRON	INTRON	ANO10	ENSG00000160746.13	ENST00000292246.8:ENST00000350459.8:ENST00000396091.7:ENST00000414522.6:ENST00000451430.6:ENST00000448045.1	protein_coding	protein_coding	protein_coding	protein_coding	2	47	2	2.33771	3.4237599999999997	4.50981	0.0275554	0.0142701	0.123904	0.103838
chr11	58605537	58605637	4794008	0	+	0.38	(0.378,0.408]	chr11	443838	203	INTRON	INTRON	ZFP91	ENSG00000186660.15	ENST00000316059.7	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	2.85854	3.4236050000000002	3.98867	0.0507	0.0107837	0.156383	0.0920575
chr10	7318747	7318847	4552010	0	-	0.37	(0.35,0.378]	chr10	420230	324	INTRON	INTRON	SFMBT2	ENSG00000198879.13	ENST00000397167.6:ENST00000361972.8:ENST00000684547.1:ENST00000683762.1:ENST00000673876.1:ENST00000682896.1:ENST00000379713.8:ENST00000682101.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	31	2	2.6498	3.42345	4.1971	0.0367539	0.0210137	0.138959	0.122348
chr12	106461033	106461131	5216830	0	+	0.377551	(0.35,0.378]	chr12	493786	13	INTRON	INTRON	POLR3B	ENSG00000013503.10	ENST00000228347.9:ENST00000539066.5	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	2.6498	3.42345	4.1971	0.0367539	0.0210137	0.138959	0.122348
chr13	41948036	41948136	5582417	0	-	0.36	(0.35,0.378]	chr13	533559	355	INTRON	INTRON	VWA8	ENSG00000102763.18	ENST00000379310.8:ENST00000281496.6	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	2.6498	3.42345	4.1971	0.0367539	0.0210137	0.138959	0.122348
chr17	15527791	15527890	6732107	0	-	0.373737	(0.35,0.378]	chr17	660302	108	INTRON	INTRON	TVP23C-CDRT4:TVP23C	ENSG00000259024.6:ENSG00000175106.17	ENST00000522212.6:ENST00000557349.5:ENST00000481756.7:ENST00000518506.4:ENST00000225576.7:ENST00000581273.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	31	2	2.6498	3.42345	4.1971	0.0367539	0.0210137	0.138959	0.122348
chr17	39389376	39389476	6766530	0	-	0.36	(0.35,0.378]	chr17	665497	458	INTRON	INTRON	FBXL20	ENSG00000108306.13	ENST00000264658.11:ENST00000583610.5:ENST00000394294.7:ENST00000577399.5:ENST00000647139.1	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	2.6498	3.42345	4.1971	0.0367539	0.0210137	0.138959	0.122348
chr19	5660496	5660594	7005688	0	+	0.377551	(0.35,0.378]	chr19	695018	28	INTRON	INTRON	SAFB	ENSG00000160633.13	ENST00000589863.5:ENST00000588852.2:ENST00000292123.9:ENST00000592224.5:ENST00000454510.5:ENST00000589006.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	31	2	2.6498	3.42345	4.1971	0.0367539	0.0210137	0.138959	0.122348
chr21	5571477	5571577	7364312	0	+	0.37	(0.35,0.378]	chr21	751622	49	INTRON	INTRON	ENSG00000274333	ENSG00000274333.4	ENST00000619252.4:ENST00000623449.3:ENST00000624627.3:ENST00000623436.3:ENST00000624368.3:ENST00000623914.3:ENST00000624516.1:ENST00000624412.3:ENST00000622939.3:ENST00000623050.1	lncRNA	lncRNA	lncRNA	lncRNA	1	31	2	2.6498	3.42345	4.1971	0.0367539	0.0210137	0.138959	0.122348
chr4	98898227	98898325	2208210	0	-	0.357143	(0.35,0.378]	chr4	216170	23	INTRON	INTRON	EIF4E	ENSG00000151247.13	ENST00000450253.7:ENST00000280892.10:ENST00000515638.5:ENST00000504432.5:ENST00000511644.5:ENST00000505992.1:ENST00000507665.5:ENST00000504472.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	31	2	2.6498	3.42345	4.1971	0.0367539	0.0210137	0.138959	0.122348
chr4	159282003	159282103	2075302	0	+	0.36	(0.35,0.378]	chr4	205230	134	INTRON	INTRON	RAPGEF2	ENSG00000109756.10	ENST00000644474.1:ENST00000691494.1:ENST00000505478.5:ENST00000504604.5:ENST00000644902.1:ENST00000511336.5:ENST00000510510.5:ENST00000264431.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	31	2	2.6498	3.42345	4.1971	0.0367539	0.0210137	0.138959	0.122348
chr5	72854286	72854384	2387503	0	+	0.377551	(0.35,0.378]	chr5	230372	26	INTRON	INTRON	TNPO1	ENSG00000083312.19	ENST00000680533.1:ENST00000515483.5:ENST00000520850.5:ENST00000337273.10:ENST00000680025.1:ENST00000523768.5:ENST00000681711.1:ENST00000518279.5:ENST00000679378.1:ENST00000513944.5:ENST00000506351.6:ENST00000506528.5:ENST00000511754.5:ENST00000509030.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	31	2	2.6498	3.42345	4.1971	0.0367539	0.0210137	0.138959	0.122348
chr1	15882168	15882268	35009	0	+	0.4	(0.378,0.408]	chr1	4272	51	INTRON	INTRON	SPEN	ENSG00000065526.12	ENST00000673875.1:ENST00000375759.8:ENST00000438066.1:ENST00000442985.1	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	2.26252	3.423395	4.58427	0.056222	0.0128325	0.18407	0.0926667
chr1	28603439	28603538	409603	0	-	0.40404	(0.378,0.408]	chr1	49320	7	UTR3	UTR3:EXON_MRNA:INTRON	TAF12	ENSG00000120656.14	ENST00000685589.1:ENST00000693642.1:ENST00000688108.1:ENST00000692098.1:ENST00000691563.1:ENST00000471683.6:ENST00000495422.2:ENST00000373824.9:ENST00000685312.1:ENST00000690860.1:ENST00000691050.1:ENST00000689843.1:ENST00000263974.4:ENST00000688425.1:ENST00000693729.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	30	2	2.26252	3.423395	4.58427	0.056222	0.0128325	0.18407	0.0926667
chr10	125744157	125744252	4535797	0	+	0.378947	(0.378,0.408]	chr10	418677	5	INTRON	INTRON	EDRF1	ENSG00000107938.18	ENST00000481600.5:ENST00000419769.6:ENST00000368815.6:ENST00000525091.5:ENST00000337623.7:ENST00000356792.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	30	2	2.26252	3.423395	4.58427	0.056222	0.0128325	0.18407	0.0926667
chr14	100240722	100240822	5814821	0	+	0.39	(0.378,0.408]	chr14	551330	4	INTRON	INTRON	YY1	ENSG00000100811.14	ENST00000262238.10:ENST00000553625.5:ENST00000554804.1:ENST00000651219.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	30	2	2.26252	3.423395	4.58427	0.056222	0.0128325	0.18407	0.0926667
chr16	47202894	47202994	6481104	0	-	0.38	(0.378,0.408]	chr16	626957	399	INTRON	INTRON	ITFG1	ENSG00000129636.13	ENST00000568047.5:ENST00000320640.11:ENST00000537184.6:ENST00000542691.5:ENST00000567957.1:ENST00000544001.6:ENST00000565262.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	30	2	2.26252	3.423395	4.58427	0.056222	0.0128325	0.18407	0.0926667
chr16	54927924	54928019	6488523	0	-	0.4	(0.378,0.408]	chr16	627580	12	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	CRNDE	ENSG00000245694.11	ENST00000661493.1:ENST00000668556.1:ENST00000660344.1:ENST00000502066.7:ENST00000559598.7:ENST00000688921.1:ENST00000501177.9:ENST00000689582.1:ENST00000558031.7:ENST00000689375.1:ENST00000691307.1:ENST00000657142.1:ENST00000557792.2:ENST00000559432.6:ENST00000655114.1:ENST00000560912.6:ENST00000558952.2:ENST00000560208.1	lncRNA	lncRNA	lncRNA	lncRNA	1	30	2	2.26252	3.423395	4.58427	0.056222	0.0128325	0.18407	0.0926667
chr2	99461695	99461795	1189595	0	-	0.38	(0.378,0.408]	chr2	127708	98	INTRON	INTRON	REV1	ENSG00000135945.10	ENST00000393445.7:ENST00000258428.8:ENST00000413697.5:ENST00000473819.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	30	2	2.26252	3.423395	4.58427	0.056222	0.0128325	0.18407	0.0926667
chr5	65629367	65629467	2368935	0	+	0.38	(0.378,0.408]	chr5	228300	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	TRAPPC13:SHLD3	ENSG00000113597.18:ENSG00000253251.3	ENST00000512009.5:ENST00000399438.8:ENST00000510585.3:ENST00000438419.6:ENST00000231526.8:ENST00000505553.5:ENST00000504751.5:ENST00000508304.5:ENST00000514404.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	30	2	2.26252	3.423395	4.58427	0.056222	0.0128325	0.18407	0.0926667
chr5	119187612	119187712	2460962	0	+	0.4	(0.378,0.408]	chr5	235744	90	INTRON	INTRON	DMXL1	ENSG00000172869.15	ENST00000539542.6:ENST00000311085.8	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	2.26252	3.423395	4.58427	0.056222	0.0128325	0.18407	0.0926667
chr6	87690139	87690239	3152800	0	-	0.4	(0.378,0.408]	chr6	294114	80	INTRON	INTRON	AKIRIN2	ENSG00000135334.9	ENST00000257787.6	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	2.26252	3.423395	4.58427	0.056222	0.0128325	0.18407	0.0926667
chr6	156907236	156907336	3008460	0	+	0.39	(0.378,0.408]	chr6	281116	52	INTRON	INTRON	ARID1B	ENSG00000049618.24	ENST00000346085.10:ENST00000636930.2:ENST00000647938.1:ENST00000350026.10:ENST00000674298.1:ENST00000674190.1:ENST00000636748.1:ENST00000414678.7:ENST00000638000.1:ENST00000637532.1:ENST00000319584.11	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	30	2	2.26252	3.423395	4.58427	0.056222	0.0128325	0.18407	0.0926667
chr10	125155636	125155735	4714294	0	-	0.242424	[0,0.28]	chr10	434933	175	INTRON	INTRON	CTBP2	ENSG00000175029.17	ENST00000337195.9:ENST00000411419.6:ENST00000494626.6:ENST00000531469.5:ENST00000460976.5:ENST00000476817.1:ENST00000530884.1:ENST00000467395.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	76	2	1.37159	3.423365	5.47514	0.0634918	0.00354561	0.198135	0.0529186
chr6	147221457	147221557	2988878	0	+	0.3	(0.28,0.32]	chr6	280001	150	INTRON	INTRON	STXBP5	ENSG00000164506.15	ENST00000321680.11:ENST00000367481.7:ENST00000546097.5:ENST00000367480.7	protein_coding	protein_coding	protein_coding	protein_coding	6	168	2	2.36631	3.42335	4.48039	0.00142417	2.59955e-5	0.0347039	0.0042231
chr1	228400463	228400563	651941	0	-	0.59	(0.57,1]	chr1	77192	1	SS5_PROX	SS5_PROX:INTRON	TRIM11	ENSG00000154370.16	ENST00000493030.6:ENST00000284551.11:ENST00000602582.5:ENST00000366699.3:ENST00000602308.1	protein_coding	protein_coding	protein_coding	protein_coding	1	20	2	2.53383	3.4233000000000002	4.31277	0.02547	0.00346264	0.12011	0.0539802
chr11	988827	988917	4721734	0	+	0.577778	(0.57,1]	chr11	436704	1	SS5_PROX	SS5_PROX:INTRON	AP2A2	ENSG00000183020.15	ENST00000332231.9:ENST00000448903.7:ENST00000529858.6:ENST00000693238.1:ENST00000687890.1:ENST00000687792.1:ENST00000528815.5:ENST00000528195.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	20	2	2.53383	3.4233000000000002	4.31277	0.02547	0.00346264	0.12011	0.0539802
chr19	13120245	13120344	7022667	0	+	0.606061	(0.57,1]	chr19	698366	14	INTRON	INTRON	NACC1	ENSG00000160877.6	ENST00000586171.2:ENST00000292431.5	protein_coding	protein_coding	protein_coding	protein_coding	1	20	2	2.53383	3.4233000000000002	4.31277	0.02547	0.00346264	0.12011	0.0539802
chr7	102403307	102403405	3371477	0	+	0.571429	(0.57,1]	chr7	315466	33	INTRON	INTRON	PRKRIP1	ENSG00000128563.13	ENST00000477886.5:ENST00000469763.5:ENST00000482549.5:ENST00000496391.5:ENST00000482465.5:ENST00000462601.5:ENST00000397912.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	20	2	2.53383	3.4233000000000002	4.31277	0.02547	0.00346264	0.12011	0.0539802
chr7	102572096	102572190	3588876	0	-	0.585106	(0.57,1]	chr7	335055	5	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	POLR2J3	ENSG00000168255.20:ENSG00000285437.2	ENST00000489144.5:ENST00000464525.5:ENST00000379340.9:ENST00000486319.5:ENST00000513506.6:ENST00000508848.5:ENST00000506060.5:ENST00000502415.5:ENST00000507355.5:ENST00000608621.5:ENST00000511313.5:ENST00000504157.5:ENST00000508910.5:ENST00000621093.4:ENST00000443430.2:ENST00000513438.1:ENST00000504101.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	20	2	2.53383	3.4233000000000002	4.31277	0.02547	0.00346264	0.12011	0.0539802
chr9	127885625	127885719	4356771	0	-	0.606383	(0.57,1]	chr9	399987	4	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	ENSG00000257524:ST6GALNAC6	ENSG00000257524.6:ENSG00000160408.16	ENST00000643029.1:ENST00000643338.1:ENST00000646171.1:ENST00000645007.1:ENST00000622357.5:ENST00000373146.6:ENST00000542456.5:ENST00000373144.7:ENST00000373142.5:ENST00000373141.5:ENST00000291839.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	20	2	2.53383	3.4233000000000002	4.31277	0.02547	0.00346264	0.12011	0.0539802
chr2	161339432	161339532	901422	0	+	0.26	[0,0.28]	chr2	99704	202	INTRON	INTRON	PSMD14	ENSG00000115233.12	ENST00000409682.8:ENST00000437630.1	protein_coding	protein_coding	protein_coding	protein_coding	2	50	2	2.15457	3.42324	4.69191	0.0269474	0.0269306	0.135288	0.123442
chr7	23410368	23410467	3503062	0	-	0.424242	(0.408,0.44]	chr7	326892	49	INTRON	INTRON	IGF2BP3	ENSG00000136231.14	ENST00000258729.8:ENST00000421467.6:ENST00000468263.5:ENST00000479504.5:ENST00000466809.6:ENST00000491719.5:ENST00000465058.5:ENST00000469723.5:ENST00000476938.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	54	2	1.55035	3.423235	5.29612	0.0455214	0.00113523	0.164236	0.0307488
chr7	107434428	107434528	3611729	0	-	0.42	(0.408,0.44]	chr7	336694	214	INTRON	INTRON	COG5	ENSG00000164597.15	ENST00000297135.9:ENST00000347053.8:ENST00000393603.7:ENST00000484237.5:ENST00000475638.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	54	2	1.55035	3.423235	5.29612	0.0455214	0.00113523	0.164236	0.0307488
chr15	85016825	85016925	6089280	0	+	0.32	(0.28,0.32]	chr15	579504	341	INTRON	INTRON	PDE8A	ENSG00000073417.15	ENST00000310298.8:ENST00000557957.5:ENST00000394553.6:ENST00000339708.9:ENST00000478717.5:ENST00000485596.5:ENST00000559742.5:ENST00000559086.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	55	2	1.85772	3.4232199999999997	4.98872	0.0300199	0.00838468	0.142135	0.0774402
chr1	36256786	36256885	73255	0	+	0.484848	(0.476,0.515]	chr1	9371	310	INTRON	INTRON	THRAP3	ENSG00000054118.15	ENST00000469141.6:ENST00000648638.1:ENST00000354618.10	protein_coding	protein_coding	protein_coding	protein_coding	2	42	2	1.72558	3.42315	5.12072	0.0767648	8.42139e-4	0.196164	0.0263691
chr3	187745249	187745326	1890317	0	-	0.324675	(0.32,0.35]	chr3	189088	2	EXON_LNCRNA	EXON_LNCRNA	ENSG00000289331	ENSG00000289331.1	ENST00000691617.1	lncRNA	lncRNA	lncRNA	lncRNA	4	145	2	2.69421	3.42315	4.15209	0.00484681	1.55668e-6	0.0605691	7.47971e-4
chr4	150927323	150927422	2270889	0	-	0.353535	(0.35,0.378]	chr4	220911	57	INTRON	INTRON	LRBA	ENSG00000198589.14	ENST00000357115.9:ENST00000651943.2:ENST00000510413.5:ENST00000651035.1:ENST00000507224.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	45	2	1.75561	3.423065	5.09052	0.0739399	0.00123501	0.190914	0.0326215
chr19	43587151	43587250	7187428	0	-	0.464646	(0.44,0.476]	chr19	727431	29	UTR3	UTR3:EXON_MRNA:INTRON	IRGQ	ENSG00000167378.10	ENST00000422989.6:ENST00000602269.2:ENST00000601520.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	33	2	2.74063	3.4230150000000004	4.1054	0.0220205	0.0176095	0.123836	0.105143
chr2	48320292	48320392	777375	0	+	0.47	(0.44,0.476]	chr2	87463	51	INTRON	INTRON	FOXN2	ENSG00000170802.17	ENST00000413569.5:ENST00000340553.8	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	2.74063	3.4230150000000004	4.1054	0.0220205	0.0176095	0.123836	0.105143
chr8	127803659	127803759	3860134	0	+	0.45	(0.44,0.476]	chr8	355385	1	SS5_PROX	SS5_PROX:INTRON	PVT1	ENSG00000249859.13	ENST00000667305.1:ENST00000690350.1:ENST00000653522.1:ENST00000664214.1:ENST00000664139.1:ENST00000661830.1:ENST00000657289.1:ENST00000504719.7:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000656880.1:ENST00000660200.1:ENST00000669132.1:ENST00000657211.1:ENST00000653845.1:ENST00000517525.2:ENST00000665856.1:ENST00000651587.1:ENST00000692980.1:ENST00000666353.1:ENST00000657183.1:ENST00000654324.1:ENST00000658556.1:ENST00000657693.1:ENST00000666080.1:ENST00000667539.1:ENST00000521951.1:ENST00000524165.6:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000664293.1:ENST00000657297.1:ENST00000662410.1:ENST00000670795.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000654091.1:ENST00000523328.6:ENST00000657356.1:ENST00000523427.2:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000662061.1:ENST00000667204.1:ENST00000656491.1:ENST00000667714.1:ENST00000654105.1:ENST00000665721.1:ENST00000518528.2:ENST00000669416.1:ENST00000660438.1:ENST00000661160.1:ENST00000659326.1:ENST00000665246.1:ENST00000657384.1:ENST00000666842.1:ENST00000517790.2:ENST00000522963.6:ENST00000654369.1:ENST00000661625.1:ENST00000657596.1:ENST00000664995.1:ENST00000656532.1:ENST00000656168.1:ENST00000661988.1:ENST00000657517.1:ENST00000670714.1:ENST00000669951.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000656693.1:ENST00000668123.1:ENST00000666776.1:ENST00000664299.1:ENST00000669272.1:ENST00000659912.1:ENST00000670532.1:ENST00000660896.1:ENST00000667149.1:ENST00000656396.1:ENST00000523068.2	lncRNA	lncRNA	lncRNA	lncRNA	1	33	2	2.74063	3.4230150000000004	4.1054	0.0220205	0.0176095	0.123836	0.105143
chr7	43706701	43706801	3526150	0	-	0.51	(0.476,0.515]	chr7	328779	406	INTRON	INTRON	COA1	ENSG00000106603.20	ENST00000415076.6:ENST00000446330.6:ENST00000446564.5:ENST00000438444.5:ENST00000223336.11:ENST00000310564.10:ENST00000415798.5:ENST00000431651.5:ENST00000451651.5:ENST00000418140.5:ENST00000448704.5:ENST00000470156.1:ENST00000457939.1:ENST00000420441.1:ENST00000478504.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	86	2	3.23946	3.422865	3.60627	7.49088e-4	2.59571e-4	0.0251179	0.014326
chr3	37015534	37015632	1395375	0	+	0.285714	(0.28,0.32]	chr3	146227	6	INTRON	INTRON	MLH1	ENSG00000076242.16	ENST00000536378.5:ENST00000673899.1:ENST00000674111.1:ENST00000673972.1:ENST00000673713.1:ENST00000231790.8:ENST00000673715.1:ENST00000432299.6:ENST00000673897.1:ENST00000442249.6:ENST00000673947.1:ENST00000456676.6:ENST00000673673.1:ENST00000674019.1:ENST00000458205.6:ENST00000413212.2:ENST00000447829.6:ENST00000673990.1:ENST00000455445.6:ENST00000435176.5:ENST00000539477.6:ENST00000441265.6:ENST00000674107.1:ENST00000458009.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	58	2	2.18212	3.422855	4.66359	0.0193496	0.010265700000000001	0.108861	0.089002
chr17	31095968	31096068	6591143	0	+	0.48	(0.476,0.515]	chr17	641053	2	INTRON	INTRON	NF1	ENSG00000196712.20	ENST00000696138.1:ENST00000356175.7:ENST00000487476.5:ENST00000691014.1:ENST00000358273.9:ENST00000431387.8:ENST00000579081.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	61	2	1.69413	3.4227800000000004	5.15143	0.0200655	0.00166579	0.121043	0.0369207
chr1	223791214	223791310	642806	0	-	0.333333	(0.32,0.35]	chr1	75870	17	INTRON	INTRON	TP53BP2	ENSG00000143514.17	ENST00000343537.12:ENST00000391878.6:ENST00000483398.5:ENST00000498843.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	35	2	2.37794	3.4227600000000002	4.46758	0.0498601	0.0119306	0.156383	0.0962115
chr10	68722258	68722354	4442275	0	+	0.34375	(0.32,0.35]	chr10	409589	2	SS3_PROX	SS3_PROX:INTRON	CCAR1	ENSG00000060339.14	ENST00000536391.5:ENST00000630771.2:ENST00000538031.5:ENST00000543719.5:ENST00000541012.5:ENST00000265872.11:ENST00000539539.5:ENST00000543229.5:ENST00000536012.5:ENST00000543225.5:ENST00000494903.2:ENST00000540210.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	35	2	2.37794	3.4227600000000002	4.46758	0.0498601	0.0119306	0.156383	0.0962115
chr15	101246280	101246379	6269756	0	-	0.323232	(0.32,0.35]	chr15	597945	38	INTRON	INTRON	CHSY1	ENSG00000131873.7	ENST00000254190.4	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	2.37794	3.4227600000000002	4.46758	0.0498601	0.0119306	0.156383	0.0962115
chr3	47679467	47679561	1684035	0	-	0.329787	(0.32,0.35]	chr3	172034	8	INTRON	INTRON	SMARCC1	ENSG00000173473.11	ENST00000254480.10:ENST00000425518.5:ENST00000462198.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	35	2	2.37794	3.4227600000000002	4.46758	0.0498601	0.0119306	0.156383	0.0962115
chr1	61688708	61688807	468001	0	-	0.585859	(0.57,1]	chr1	56549	14	INTRON	INTRON	TM2D1	ENSG00000162604.12	ENST00000606498.5:ENST00000294613.9:ENST00000371180.6:ENST00000488206.5:ENST00000472989.5:ENST00000488410.5:ENST00000468586.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	74	2	3.25513	3.4227299999999996	3.59033	2.35468e-5	1.72589e-5	0.00396325	0.00315885
chr4	80068736	80068835	2170511	0	-	0.333333	(0.32,0.35]	chr4	213931	124	INTRON	INTRON	ANTXR2	ENSG00000163297.18	ENST00000403729.7:ENST00000449651.5:ENST00000679571.1:ENST00000681710.1:ENST00000680913.1:ENST00000681115.1:ENST00000404191.5:ENST00000346652.10:ENST00000307333.7:ENST00000514959.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	55	2	2.22655	3.42272	4.61889	0.0166646	0.00823133	0.102621	0.0812969
chr12	111545088	111545188	5412684	0	-	0.46	(0.44,0.476]	chr12	516916	194	INTRON	INTRON	ATXN2	ENSG00000204842.18	ENST00000642389.2:ENST00000608853.5:ENST00000672613.1:ENST00000673436.1:ENST00000643669.2:ENST00000616825.4:ENST00000389153.10:ENST00000550104.5:ENST00000483311.6:ENST00000672335.1:ENST00000492467.6:ENST00000673557.1:ENST00000673283.1:ENST00000673449.1:ENST00000535949.5:ENST00000542287.6:ENST00000644883.1:ENST00000647305.1:ENST00000671792.1:ENST00000392645.6:ENST00000672105.1:ENST00000471866.5:ENST00000549455.1:ENST00000548492.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	65	2	3.12799	3.42263	3.71727	0.0050635	3.2089e-4	0.0621733	0.0159645
chr19	315042	315142	7109306	0	-	0.58	(0.57,1]	chr19	713786	10	INTRON	INTRON	MIER2	ENSG00000105556.12	ENST00000264819.7	protein_coding	protein_coding	protein_coding	protein_coding	3	31	2	1.79063	3.4225600000000003	5.05449	0.0356001	1.79828e-4	0.15159	0.0121697
chr17	66000489	66000589	6822098	0	-	0.34	(0.32,0.35]	chr17	674248	385	INTRON	INTRON	CEP112	ENSG00000154240.17	ENST00000535342.7:ENST00000392769.6:ENST00000537949.5	protein_coding	protein_coding	protein_coding	protein_coding	2	43	2	2.07985	3.4224300000000003	4.76501	0.0303092	0.0114287	0.143025	0.0886611
chr16	70271480	70271580	6510310	0	-	0.41	(0.408,0.44]	chr16	630580	3	SS5_PROX	SS5_PROX:INTRON	AARS1	ENSG00000090861.17	ENST00000674963.1:ENST00000675643.1:ENST00000675917.1:ENST00000674691.1:ENST00000261772.13:ENST00000675569.1:ENST00000676209.1:ENST00000676211.1:ENST00000676040.1:ENST00000675953.1:ENST00000675691.1:ENST00000676004.1:ENST00000675270.1:ENST00000675403.1:ENST00000676212.1:ENST00000675045.1:ENST00000675035.1:ENST00000676168.1:ENST00000674652.1:ENST00000675133.1:ENST00000675120.1:ENST00000674811.1:ENST00000674512.1:ENST00000675853.1:ENST00000565361.3:ENST00000676247.1:ENST00000674848.1:ENST00000674962.1:ENST00000675371.1:ENST00000675986.1:ENST00000674768.1:ENST00000675297.1:ENST00000675751.1:ENST00000564359.6:ENST00000675338.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	121	2	2.99621	3.4224	3.84859	2.66911e-4	6.51509e-5	0.0149989	0.00669119
chr2	235521525	235521625	1041610	0	+	0.41	(0.408,0.44]	chr2	111217	263	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	104	2	2.91156	3.422325	3.93309	3.17111e-4	1.78185e-4	0.0159645	0.0121697
chr22	50398120	50398220	7544742	0	+	0.47	(0.44,0.476]	chr22	771041	36	INTRON	INTRON	PPP6R2	ENSG00000100239.16	ENST00000359139.7:ENST00000395741.7:ENST00000612753.5:ENST00000395744.7:ENST00000216061.9	protein_coding	protein_coding	protein_coding	protein_coding	7	191	2	3.18331	3.422295	3.66128	3.73958e-5	3.16312e-6	0.00522012	0.00115089
chr11	108366306	108366406	4858600	0	+	0.26	[0,0.28]	chr11	453406	9	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ATM	ENSG00000149311.20	ENST00000675843.1:ENST00000683174.1:ENST00000452508.6:ENST00000278616.9:ENST00000683524.1:ENST00000684152.1:ENST00000682286.1:ENST00000682302.1:ENST00000684447.1:ENST00000638786.2:ENST00000684180.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	40	2	2.20927	3.42225	4.63523	0.0794763	0.0139836	0.19979	0.10247
chr17	30895773	30895869	6591089	0	+	0.208333	[0,0.28]	chr17	641038	10	UTR3	UTR3:EXON_MRNA	ATAD5	ENSG00000176208.9	ENST00000321990.5	protein_coding	protein_coding	protein_coding	protein_coding	1	40	2	2.20927	3.42225	4.63523	0.0794763	0.0139836	0.19979	0.10247
chr5	54409321	54409421	2354721	0	+	0.25	[0,0.28]	chr5	227095	4	INTRON	INTRON	LINC01033	ENSG00000249069.8	ENST00000653566.1:ENST00000655801.1:ENST00000654906.1:ENST00000659703.1:ENST00000662351.1:ENST00000523194.7:ENST00000665795.1:ENST00000667992.1:ENST00000657771.1:ENST00000658828.1:ENST00000670528.1:ENST00000657274.1:ENST00000504609.3	lncRNA	lncRNA	lncRNA	lncRNA	1	40	2	2.20927	3.42225	4.63523	0.0794763	0.0139836	0.19979	0.10247
chr5	141575646	141575729	2739731	0	-	0.277108	[0,0.28]	chr5	258095	1	INTRON	INTRON	DIAPH1	ENSG00000131504.18	ENST00000647433.1:ENST00000389054.8:ENST00000518047.5:ENST00000647330.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	40	2	2.20927	3.42225	4.63523	0.0794763	0.0139836	0.19979	0.10247
chr8	6738750	6738850	3695309	0	+	0.2	[0,0.28]	chr8	342850	2	SS5_PROX	SS5_PROX:INTRON	AGPAT5	ENSG00000155189.12	ENST00000285518.11:ENST00000523234.5:ENST00000518327.1:ENST00000530716.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	40	2	2.20927	3.42225	4.63523	0.0794763	0.0139836	0.19979	0.10247
chr9	131410629	131410729	4217135	0	+	0.28	[0,0.28]	chr9	386720	160	INTRON	INTRON	PRRC2B	ENSG00000288701.1	ENST00000682525.1:ENST00000684596.1:ENST00000683519.1:ENST00000682501.1	protein_coding	protein_coding	protein_coding	protein_coding	1	40	2	2.20927	3.42225	4.63523	0.0794763	0.0139836	0.19979	0.10247
chr21	18736323	18736423	7435166	0	-	0.43	(0.408,0.44]	chr21	758112	1237	INTRON	INTRON	MIR548XHG	ENSG00000224141.6	ENST00000671206.1:ENST00000437492.6:ENST00000355189.7:ENST00000653218.1:ENST00000656413.1:ENST00000414582.1	lncRNA	lncRNA	lncRNA	lncRNA	4	107	2	2.8411	3.4222449999999998	4.00339	6.58235e-4	7.25052e-5	0.0234118	0.00709818
chr2	87515217	87515317	826527	0	+	0.29	(0.28,0.32]	chr2	92446	55	INTRON	INTRON	CYTOR:ENSG00000284879	ENSG00000222041.12:ENSG00000284879.1	ENST00000642796.1:ENST00000643589.1:ENST00000642451.1:ENST00000646386.1:ENST00000644478.1:ENST00000409139.6:ENST00000331944.10:ENST00000644125.1:ENST00000643743.1:ENST00000644577.1:ENST00000643276.1:ENST00000409898.2:ENST00000419680.6:ENST00000644976.1:ENST00000643070.1:ENST00000646855.1:ENST00000414584.1:ENST00000455131.5:ENST00000646636.1:ENST00000642293.1:ENST00000423846.5:ENST00000644040.1:ENST00000645138.1:ENST00000437561.2:ENST00000629257.1:ENST00000645729.1:ENST00000413202.1	lncRNA	lncRNA	lncRNA	lncRNA	2	81	2	3.33596	3.42216	3.50836	0.00342993	0.00117393	0.0517761	0.0316446
chr7	97149216	97149316	3357276	0	+	0.4	(0.378,0.408]	chr7	313218	60	INTRON	INTRON	SDHAF3	ENSG00000196636.8	ENST00000432641.3:ENST00000360382.4:ENST00000479853.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	48	2	1.78011	3.422115	5.06412	0.0356367	0.0030522	0.151629	0.0493883
chr10	21718647	21718747	4406279	0	+	0.27	[0,0.28]	chr10	406555	43	INTRON	INTRON	MLLT10	ENSG00000078403.17	ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000651298.1:ENST00000377059.7:ENST00000651382.1:ENST00000438473.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	49	2	1.84147	3.42205	5.00263	0.0610416	0.013055	0.193277	0.093385
chr2	15390265	15390364	1071428	0	-	0.262626	[0,0.28]	chr2	114321	66	INTRON	INTRON	NBAS	ENSG00000151779.13	ENST00000281513.10:ENST00000442506.5:ENST00000441755.5	protein_coding	protein_coding	protein_coding	protein_coding	2	49	2	1.84147	3.42205	5.00263	0.0610416	0.013055	0.193277	0.093385
chrX	139864064	139864164	7905215	0	-	0.28	[0,0.28]	chrX	804457	319	INTRON	INTRON	ATP11C	ENSG00000101974.15	ENST00000370557.5:ENST00000682941.1:ENST00000485626.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	49	2	1.84147	3.42205	5.00263	0.0610416	0.013055	0.193277	0.093385
chr1	31054512	31054612	412784	0	-	0.36	(0.35,0.378]	chr1	49733	253	INTRON	INTRON	PUM1	ENSG00000134644.16	ENST00000426105.7:ENST00000373747.7:ENST00000257075.9:ENST00000424085.6:ENST00000525843.5:ENST00000440538.6:ENST00000373741.8:ENST00000373742.6:ENST00000526215.5:ENST00000525948.5:ENST00000480602.1:ENST00000524516.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	15	238	2	2.06516	3.421895	4.77863	4.92729e-4	2.53187e-6	0.0200992	0.00111536
chr8	15573983	15574083	3704474	0	+	0.34	(0.32,0.35]	chr8	343556	119	INTRON	INTRON	TUSC3	ENSG00000104723.21	ENST00000503191.5:ENST00000382020.8:ENST00000515859.5:ENST00000506802.5:ENST00000503731.6:ENST00000510836.5:ENST00000509380.5:ENST00000507400.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	36	2	2.57263	3.4218800000000003	4.27113	0.0312297	0.0199982	0.13151	0.120668
chr9	130838815	130838914	4215113	0	+	0.333333	(0.32,0.35]	chr9	386432	29	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000393293.4:ENST00000318560.6	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	2.57263	3.4218800000000003	4.27113	0.0312297	0.0199982	0.13151	0.120668
chr10	5431227	5431327	4384047	0	+	0.33	(0.32,0.35]	chr10	404406	16	INTRON	INTRON	NET1	ENSG00000173848.19	ENST00000355029.9	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	2.78073	3.42186	4.06299	0.0559439	0.01481	0.165463	0.106702
chr12	70315206	70315306	5167163	0	+	0.34	(0.32,0.35]	chr12	489427	38	INTRON	INTRON	CNOT2	ENSG00000111596.14	ENST00000418359.7:ENST00000552319.5:ENST00000550160.5:ENST00000551661.5:ENST00000551132.5:ENST00000548021.5:ENST00000550641.6:ENST00000229195.8:ENST00000552915.5:ENST00000549443.5:ENST00000552483.5:ENST00000547321.5:ENST00000553020.5:ENST00000548159.5:ENST00000549750.5:ENST00000551043.5:ENST00000548599.5:ENST00000550194.5:ENST00000551873.5:ENST00000547867.5:ENST00000552151.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	33	2	2.78073	3.42186	4.06299	0.0559439	0.01481	0.165463	0.106702
chr13	95126399	95126499	5638104	0	-	0.34	(0.32,0.35]	chr13	537056	100	INTRON	INTRON	ABCC4	ENSG00000125257.16	ENST00000645237.2:ENST00000643051.1:ENST00000643842.1:ENST00000646439.1:ENST00000644880.1:ENST00000643816.1:ENST00000536256.3:ENST00000643556.1:ENST00000629385.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	33	2	2.78073	3.42186	4.06299	0.0559439	0.01481	0.165463	0.106702
chr15	101205935	101206035	6269351	0	-	0.33	(0.32,0.35]	chr15	597935	165	INTRON	INTRON	CHSY1	ENSG00000131873.7	ENST00000254190.4:ENST00000543813.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	33	2	2.78073	3.42186	4.06299	0.0559439	0.01481	0.165463	0.106702
chr16	21909290	21909383	6462368	0	-	0.322581	(0.32,0.35]	chr16	623579	3	INTRON	INTRON	SMG1P4	ENSG00000185710.9	ENST00000523028.5:ENST00000381448.8:ENST00000517529.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	1	33	2	2.78073	3.42186	4.06299	0.0559439	0.01481	0.165463	0.106702
chr7	64973060	64973159	3537355	0	-	0.343434	(0.32,0.35]	chr7	329926	14	UTR3	UTR3:EXON_MRNA	ZNF117	ENSG00000152926.16	ENST00000282869.11	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	2.78073	3.42186	4.06299	0.0559439	0.01481	0.165463	0.106702
chr16	23920238	23920338	6324603	0	+	0.34	(0.32,0.35]	chr16	605701	265	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000498739.1	protein_coding	protein_coding	protein_coding	protein_coding	3	100	2	3.14789	3.421855	3.69582	7.3931e-4	5.00642e-4	0.0249744	0.020217099999999998
chr12	132819602	132819702	5450128	0	-	0.55	(0.515,0.57]	chr12	522103	24	INTRON	INTRON	GOLGA3	ENSG00000090615.16	ENST00000204726.9:ENST00000450791.8:ENST00000688114.1:ENST00000691696.1:ENST00000691636.1:ENST00000690897.1:ENST00000456883.7:ENST00000545875.4:ENST00000688251.1:ENST00000692951.1:ENST00000686751.1:ENST00000685580.1:ENST00000687165.1:ENST00000692384.1:ENST00000685120.1:ENST00000689813.1:ENST00000693112.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	75	2	2.84387	3.4217750000000002	3.99968	0.0018149	5.71792e-5	0.0384415	0.00617842
chr15	63155261	63155358	6198507	0	-	0.257732	[0,0.28]	chr15	590969	4	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	RPS27L	ENSG00000185088.14	ENST00000559763.1:ENST00000330964.10:ENST00000482846.1:ENST00000635699.1:ENST00000455271.5:ENST00000462430.5:ENST00000411926.1:ENST00000439025.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	60	2	1.84046	3.421545	5.00263	0.0335889	0.013055	0.146709	0.093385
chr5	133101426	133101510	2488514	0	+	0.25	[0,0.28]	chr5	237559	3	SS3_PROX	SS3_PROX:INTRON	HSPA4	ENSG00000170606.16	ENST00000304858.7	protein_coding	protein_coding	protein_coding	protein_coding	3	60	2	1.84046	3.421545	5.00263	0.0335889	0.013055	0.146709	0.093385
chr16	81492054	81492154	6405470	0	+	0.43	(0.408,0.44]	chr16	615026	462	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8	protein_coding	protein_coding	protein_coding	protein_coding	2	43	2	2.05947	3.421475	4.78348	0.0333232	0.00290352	0.134145	0.0494641
chr19	32605006	32605088	7168889	0	-	0.47561	(0.44,0.476]	chr19	724348	2	INTRON	INTRON	ANKRD27	ENSG00000105186.16	ENST00000306065.9	protein_coding	protein_coding	protein_coding	protein_coding	3	47	2	1.75627	3.42143	5.08659	0.0380723	0.00226401	0.157702	0.0425438
chr15	50600388	50600487	6172398	0	-	0.373737	(0.35,0.378]	chr15	588282	7	INTRON	INTRON	TRPM7	ENSG00000092439.16	ENST00000646667.1:ENST00000560955.5	protein_coding	protein_coding	protein_coding	protein_coding	6	173	2	3.10709	3.42138	3.73567	3.91305e-5	3.75394e-5	0.00523176	0.00505936
chr3	56668958	56669058	1705873	0	-	0.26	[0,0.28]	chr3	175892	4	SS3_PROX	SS3_PROX:INTRON	TASOR	ENSG00000163946.14	ENST00000683822.1:ENST00000493960.6:ENST00000355628.9	protein_coding	protein_coding	protein_coding	protein_coding	2	57	2	2.06132	3.4213699999999996	4.78142	0.0408268	0.00943974	0.1451	0.0861183
chr15	92900369	92900460	6103686	0	+	0.637363	(0.57,1]	chr15	581380	3	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	ENSG00000279765:CHD2	ENSG00000279765.3:ENSG00000173575.22	ENST00000629685.2:ENST00000630790.1:ENST00000626874.2:ENST00000627622.1:ENST00000394196.9:ENST00000635856.1:ENST00000420239.7:ENST00000628375.2:ENST00000629346.2:ENST00000625990.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	16	209	2	3.14712	3.4213649999999998	3.69561	7.41056e-8	9.00005e-9	1.17768e-4	2.56564e-5
chr12	98598903	98599003	5199041	0	+	0.5	(0.476,0.515]	chr12	491868	2	SS5_PROX	SS5_PROX:INTRON	SLC25A3	ENSG00000075415.15	ENST00000401722.7:ENST00000188376.9:ENST00000551917.5:ENST00000546766.5:ENST00000228318.8:ENST00000552981.6:ENST00000551123.5:ENST00000549338.5:ENST00000548847.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	138	2	3.21493	3.42135	3.62777	5.7577e-5	4.68477e-5	0.00620725	0.00593131
chr6	124964025	124964124	2951487	0	+	0.363636	(0.35,0.378]	chr6	277668	2	INTRON	INTRON	RNF217	ENSG00000146373.17	ENST00000521654.7:ENST00000560949.5:ENST00000519971.1:ENST00000519565.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	143	2	2.50365	3.4212299999999995	4.33881	5.68631e-4	2.94594e-5	0.0217398	0.00450823
chr16	89519877	89519977	6420456	0	+	0.34	(0.32,0.35]	chr16	616212	32	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	SPG7	ENSG00000197912.16	ENST00000647079.1:ENST00000646303.1:ENST00000643649.1:ENST00000643307.1:ENST00000566371.6:ENST00000644498.1:ENST00000645897.1:ENST00000643668.1:ENST00000644225.1:ENST00000645818.2:ENST00000645977.1:ENST00000645063.1:ENST00000646263.1:ENST00000643724.1:ENST00000644781.1:ENST00000644901.1:ENST00000645042.1:ENST00000646531.1:ENST00000646930.1:ENST00000642436.1:ENST00000644210.1:ENST00000564047.2:ENST00000646589.1:ENST00000268704.7:ENST00000646826.1:ENST00000646716.1:ENST00000643345.1:ENST00000341316.6:ENST00000645533.1:ENST00000646958.1:ENST00000642371.1:ENST00000643105.1:ENST00000645354.1:ENST00000643957.1:ENST00000642334.1:ENST00000647227.1:ENST00000562775.2:ENST00000568151.1:ENST00000646445.1:ENST00000564409.2:ENST00000643954.1:ENST00000646399.1:ENST00000644671.1:ENST00000643178.1:ENST00000611189.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	52	2	1.88255	3.4211300000000002	4.95971	0.0269187	0.00663522	0.135288	0.0703181
chr7	157371846	157371946	3455663	0	+	0.35	(0.32,0.35]	chr7	323099	3	SS3_PROX	SS3_PROX:INTRON	DNAJB6	ENSG00000105993.15	ENST00000441561.5:ENST00000429029.6:ENST00000262177.9:ENST00000486083.6:ENST00000417758.5:ENST00000459889.5:ENST00000443280.5:ENST00000441291.5:ENST00000412557.5:ENST00000634080.1:ENST00000468928.5:ENST00000465908.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	52	2	1.88255	3.4211300000000002	4.95971	0.0269187	0.00663522	0.135288	0.0703181
chr5	69097124	69097224	2379609	0	+	0.59	(0.57,1]	chr5	229053	24	INTRON	INTRON	SLC30A5	ENSG00000145740.20	ENST00000380860.8:ENST00000396591.8:ENST00000504103.5:ENST00000502979.1	protein_coding	protein_coding	protein_coding	protein_coding	4	62	2	3.20917	3.42095	3.63273	2.02775e-4	1.27941e-5	0.0129814	0.00265999
chr7	152435325	152435425	3681287	0	-	0.65	(0.57,1]	chr7	341661	3	SS5_PROX	SS5_PROX:INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000682301.1:ENST00000452749.2:ENST00000680867.1:ENST00000683800.1:ENST00000684278.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	62	2	3.20917	3.42095	3.63273	2.02775e-4	1.27941e-5	0.0129814	0.00265999
chr1	10512943	10513042	23357	0	+	0.525253	(0.515,0.57]	chr1	2503	173	INTRON	INTRON	PEX14	ENSG00000142655.13	ENST00000472851.1:ENST00000356607.9:ENST00000491661.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	28	2	2.34087	3.4209449999999997	4.50102	0.0469761	0.00510768	0.151917	0.0646039
chr1	151457762	151457861	554950	0	-	0.525253	(0.515,0.57]	chr1	65564	27	INTRON	INTRON	POGZ	ENSG00000143442.22	ENST00000271715.7:ENST00000358476.7:ENST00000368863.6:ENST00000409503.5:ENST00000531094.5:ENST00000491586.5:ENST00000485040.5:ENST00000467287.5:ENST00000533351.5:ENST00000476128.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	28	2	2.34087	3.4209449999999997	4.50102	0.0469761	0.00510768	0.151917	0.0646039
chr2	239985815	239985915	1345320	0	-	0.52	(0.515,0.57]	chr2	141052	17	INTRON	INTRON	NDUFA10	ENSG00000130414.13	ENST00000419408.5:ENST00000679183.1:ENST00000677057.1:ENST00000676782.1:ENST00000677407.1:ENST00000676929.1:ENST00000678455.1:ENST00000252711.7:ENST00000677692.1:ENST00000476216.6:ENST00000677395.1:ENST00000678188.1:ENST00000677979.1:ENST00000678914.1:ENST00000678562.1:ENST00000678832.1:ENST00000677155.1:ENST00000677764.1:ENST00000677294.1:ENST00000678468.1:ENST00000677324.1:ENST00000678158.1:ENST00000676491.1:ENST00000677114.1:ENST00000404554.5:ENST00000620965.5:ENST00000485344.6:ENST00000679308.1:ENST00000677567.1:ENST00000679158.1:ENST00000443626.5:ENST00000444548.6:ENST00000448880.6:ENST00000677490.1:ENST00000307300.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	28	2	2.34087	3.4209449999999997	4.50102	0.0469761	0.00510768	0.151917	0.0646039
chr22	21785659	21785759	7560560	0	-	0.56	(0.515,0.57]	chr22	773360	123	INTRON	INTRON	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	2.34087	3.4209449999999997	4.50102	0.0469761	0.00510768	0.151917	0.0646039
chr7	2203591	2203690	3466640	0	-	0.525253	(0.515,0.57]	chr7	324072	11	INTRON	INTRON	MAD1L1	ENSG00000002822.16	ENST00000406869.5:ENST00000399654.6:ENST00000402746.5:ENST00000265854.12:ENST00000459731.1:ENST00000486340.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	28	2	2.34087	3.4209449999999997	4.50102	0.0469761	0.00510768	0.151917	0.0646039
chr7	156732982	156733081	3686395	0	-	0.555556	(0.515,0.57]	chr7	342011	39	INTRON	INTRON	LMBR1	ENSG00000105983.23	ENST00000353442.10:ENST00000448926.5:ENST00000415428.5:ENST00000454132.5:ENST00000434503.5:ENST00000461603.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	28	2	2.34087	3.4209449999999997	4.50102	0.0469761	0.00510768	0.151917	0.0646039
chr5	54010910	54011010	2617913	0	-	0.59	(0.57,1]	chr5	248835	989	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	25	287	2	2.67979	3.420895	4.162	4.87077e-7	4.22216e-11	4.029e-4	7.14943e-7
chr1	235323414	235323514	663815	0	-	0.31	(0.28,0.32]	chr1	78552	623	INTRON	INTRON	ARID4B	ENSG00000054267.22	ENST00000349213.7:ENST00000366603.6:ENST00000264183.9:ENST00000421364.5:ENST00000491632.5:ENST00000418304.1:ENST00000466653.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	59	2	2.25298	3.420865	4.58875	0.0230574	0.00791652	0.118056	0.0797304
chr19	55056152	55056252	7212234	0	-	0.55	(0.515,0.57]	chr19	732255	1	SS5_PROX	SS5_PROX:INTRON	RDH13	ENSG00000160439.16	ENST00000591960.1:ENST00000415061.8:ENST00000610356.4:ENST00000396247.7:ENST00000291892.10:ENST00000592573.1:ENST00000587721.1:ENST00000589605.5:ENST00000589305.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	43	2	1.67758	3.420855	5.16413	0.0471728	8.14815e-4	0.168737	0.0263656
chr14	49585297	49585389	5885764	0	-	0.51087	(0.476,0.515]	chr14	558478	1	UTR3	UTR3:EXON_MRNA:INTRON	RPS29	ENSG00000213741.11	ENST00000396020.7:ENST00000556230.2:ENST00000245458.11:ENST00000557111.5:ENST00000557367.2:ENST00000554075.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	218	2	2.92433	3.4208499999999997	3.91737	2.32117e-5	4.6503e-6	0.00393827	0.00144728
chr11	44078302	44078397	4781308	0	+	0.357895	(0.35,0.378]	chr11	442082	5	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ACCS	ENSG00000110455.14	ENST00000263776.9:ENST00000531940.1:ENST00000527346.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	55	2	1.75081	3.4206649999999996	5.09052	0.0427459	0.00123501	0.148082	0.0326215
chr7	129849898	129849997	3636929	0	-	0.333333	(0.32,0.35]	chr7	338182	102	INTRON	INTRON	UBE2H	ENSG00000186591.13	ENST00000355621.8:ENST00000649897.1:ENST00000473814.6:ENST00000496698.5:ENST00000472396.5:ENST00000480245.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	56	2	2.3011	3.42049	4.53988	0.0202178	0.00617969	0.109913	0.0713552
chr1	47270066	47270166	445655	0	-	0.45	(0.44,0.476]	chr1	54000	2	SS3_PROX	SS3_PROX:INTRON	STIL	ENSG00000123473.17	ENST00000360380.7:ENST00000371877.8:ENST00000337817.10:ENST00000682940.1:ENST00000683977.1:ENST00000682977.1:ENST00000396221.6:ENST00000684618.1:ENST00000447475.7:ENST00000418131.1:ENST00000436811.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	51	2	1.71574	3.4204350000000003	5.12513	0.045256	7.96486e-4	0.149888	0.0258804
chr7	66701476	66701576	3325082	0	+	0.41	(0.408,0.44]	chr7	309221	159	INTRON	INTRON	RABGEF1	ENSG00000154710.18	ENST00000607882.5	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	8	193	2	2.79821	3.420425	4.04264	4.79665e-5	4.64757e-6	0.00566113	0.00158097
chr10	112436449	112436548	4698346	0	-	0.424242	(0.408,0.44]	chr10	433397	16	INTRON	INTRON	ZDHHC6	ENSG00000023041.12	ENST00000626395.2:ENST00000682267.1:ENST00000683505.1:ENST00000369405.7:ENST00000684173.1:ENST00000682055.1:ENST00000683895.1:ENST00000682182.1:ENST00000682195.1:ENST00000683319.1:ENST00000682731.1:ENST00000682807.1:ENST00000684234.1:ENST00000684741.1:ENST00000682616.1:ENST00000683491.1:ENST00000681964.1:ENST00000684507.1:ENST00000682441.1:ENST00000682143.1:ENST00000369404.3:ENST00000682839.1:ENST00000684617.1:ENST00000682006.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	65	2	3.28852	3.420335	3.55215	0.00287185	7.01039e-4	0.0474836	0.0241881
chr1	84672997	84673096	496601	0	-	0.363636	(0.35,0.378]	chr1	58890	13	INTRON	INTRON	SSX2IP	ENSG00000117155.17	ENST00000342203.8:ENST00000437941.6:ENST00000481102.5:ENST00000476905.6:ENST00000605755.5:ENST00000603677.1:ENST00000422026.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	45	2	1.87717	3.420235	4.9633	0.0555068	0.00198929	0.165463	0.0411469
chr10	50337493	50337592	4617813	0	-	0.363636	(0.35,0.378]	chr10	425400	98	INTRON	INTRON	SGMS1	ENSG00000198964.14	ENST00000429490.5:ENST00000361781.7:ENST00000602619.1:ENST00000361543.3:ENST00000626236.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	45	2	1.87717	3.420235	4.9633	0.0555068	0.00198929	0.165463	0.0411469
chr6	166954791	166954889	3264304	0	-	0.479592	(0.476,0.515]	chr6	303043	24	EXON_MRNA	EXON_MRNA:INTRON	ENSG00000249141:RNASET2	ENSG00000249141.1:ENSG00000026297.17	ENST00000507747.1:ENST00000508775.6:ENST00000683770.1:ENST00000611959.2:ENST00000620173.5:ENST00000682774.1:ENST00000684236.1:ENST00000683968.1:ENST00000366855.10:ENST00000421787.5:ENST00000476238.6:ENST00000028008.9:ENST00000478180.6:ENST00000358165.7:ENST00000683158.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	242	2	3.22075	3.420205	3.61966	6.08956e-6	2.28692e-6	0.00173029	0.00105319
chr15	65791609	65791709	6209790	0	-	0.62	(0.57,1]	chr15	592618	2	SS5_PROX	SS5_PROX:INTRON	DENND4A	ENSG00000174485.16	ENST00000443035.8:ENST00000431932.6:ENST00000564674.5:ENST00000568515.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	125	2	3.29555	3.42016	3.54477	9.98156e-7	4.97089e-7	5.70307e-4	4.10198e-4
chr1	31924963	31925062	414301	0	-	0.363636	(0.35,0.378]	chr1	49920	4	INTRON	INTRON	PTP4A2	ENSG00000184007.22	ENST00000647444.2:ENST00000649841.1:ENST00000468531.1:ENST00000534796.5:ENST00000532289.1:ENST00000526960.1:ENST00000524384.5:ENST00000528840.1:ENST00000494444.2:ENST00000529477.5:ENST00000533408.1:ENST00000475464.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	43	2	2.44701	3.42002	4.39303	0.0237246	0.00900997	0.118716	0.0851009
chr5	140405167	140405267	2502859	0	+	0.36	(0.35,0.378]	chr5	239166	25	INTRON	INTRON	ANKHD1	ENSG00000131503.21	ENST00000297183.10:ENST00000616482.4:ENST00000360839.7:ENST00000421134.5:ENST00000394723.7:ENST00000511151.5:ENST00000394722.7	protein_coding	protein_coding	protein_coding	protein_coding	2	43	2	2.44701	3.42002	4.39303	0.0237246	0.00900997	0.118716	0.0851009
chr3	196491281	196491381	1899898	0	-	0.45	(0.44,0.476]	chr3	190261	22	INTRON	INTRON	RNF168	ENSG00000163961.4	ENST00000318037.3:ENST00000437070.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	56	2	2.00793	3.419975	4.83202	0.00937685	0.00525002	0.0859966	0.0633615
chr1	225923229	225923323	646270	0	-	0.531915	(0.515,0.57]	chr1	76564	10	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	PYCR2	ENSG00000143811.20	ENST00000612039.4:ENST00000478402.5:ENST00000343818.11:ENST00000489681.5:ENST00000472798.2:ENST00000467298.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	228	2	3.00855	3.41997	3.83139	8.31213e-6	2.45531e-7	0.00207935	2.64663e-4
chr15	40164652	40164752	6001281	0	+	0.38	(0.378,0.408]	chr15	570574	2	SS3_PROX	SS3_PROX:INTRON	BUB1B	ENSG00000156970.13	ENST00000560120.5:ENST00000559414.5:ENST00000412359.7:ENST00000558715.5:ENST00000287598.11	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	40	2	2.17608	3.41973	4.66338	0.0218783	0.0103469	0.123836	0.0850389
chr15	44290754	44290854	6013085	0	+	0.39	(0.378,0.408]	chr15	572826	10	INTRON	INTRON	GOLM2	ENSG00000166734.20	ENST00000299957.11:ENST00000559222.5:ENST00000557945.5:ENST00000650436.1:ENST00000429162.2:ENST00000345795.6:ENST00000558735.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	40	2	2.17608	3.41973	4.66338	0.0218783	0.0103469	0.123836	0.0850389
chr1	151403514	151403613	554375	0	-	0.333333	(0.32,0.35]	chr1	65468	9	UTR3	UTR3:EXON_MRNA	POGZ	ENSG00000143442.22	ENST00000271715.7:ENST00000358476.7:ENST00000392723.5:ENST00000368863.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	32	2	2.56618	3.41959	4.273	0.0368357	0.0274185	0.138959	0.136498
chr2	200913843	200913930	1310376	0	-	0.333333	(0.32,0.35]	chr2	137128	6	EXON_MRNA	EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ORC2	ENSG00000115942.9	ENST00000234296.7:ENST00000464147.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	32	2	2.56618	3.41959	4.273	0.0368357	0.0274185	0.138959	0.136498
chr5	31431275	31431375	2595967	0	-	0.34	(0.32,0.35]	chr5	246557	3	SS5_PROX	SS5_PROX:INTRON	DROSHA	ENSG00000113360.17	ENST00000344624.8:ENST00000511367.6:ENST00000513349.5:ENST00000504133.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	32	2	2.56618	3.41959	4.273	0.0368357	0.0274185	0.138959	0.136498
chr7	135955529	135955629	3649254	0	-	0.34	(0.32,0.35]	chr7	339214	35	INTRON	INTRON	MTPN	ENSG00000105887.11	ENST00000393085.4:ENST00000435723.1	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	2.56618	3.41959	4.273	0.0368357	0.0274185	0.138959	0.136498
chr7	155661780	155661880	3452066	0	+	0.34	(0.32,0.35]	chr7	322642	165	INTRON	INTRON	RBM33	ENSG00000184863.11	ENST00000287912.7:ENST00000401878.8:ENST00000392759.7	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	2.56618	3.41959	4.273	0.0368357	0.0274185	0.138959	0.136498
chr9	109104914	109105014	4312453	0	-	0.34	(0.32,0.35]	chr9	396380	110	INTRON	INTRON	TMEM245	ENSG00000106771.13	ENST00000374586.8:ENST00000491854.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	32	2	2.56618	3.41959	4.273	0.0368357	0.0274185	0.138959	0.136498
chr9	135819843	135819942	4371377	0	-	0.333333	(0.32,0.35]	chr9	402421	3	INTRON	INTRON	CAMSAP1	ENSG00000130559.19	ENST00000389532.9:ENST00000312405.10:ENST00000483991.5:ENST00000409386.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	32	2	2.56618	3.41959	4.273	0.0368357	0.0274185	0.138959	0.136498
chr7	30618945	30619043	3301691	0	+	0.265306	[0,0.28]	chr7	306585	13	INTRON	INTRON	GARS1	ENSG00000106105.15	ENST00000675051.1:ENST00000470392.2:ENST00000674643.1:ENST00000675529.1:ENST00000674807.1:ENST00000675810.1:ENST00000676088.1:ENST00000674815.1:ENST00000676403.1:ENST00000485784.2:ENST00000676210.1:ENST00000478124.6:ENST00000389266.8:ENST00000675693.1:ENST00000676259.1:ENST00000675651.1:ENST00000674616.1:ENST00000674737.1:ENST00000675859.1:ENST00000676140.1:ENST00000674969.1:ENST00000676164.1:ENST00000675886.1:ENST00000444666.6:ENST00000675587.1:ENST00000674851.1:ENST00000675863.1:ENST00000674734.1:ENST00000484093.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	52	2	2.3719	3.41958	4.46726	0.0427997	0.0139689	0.148082	0.10247
chr17	56896252	56896352	6798962	0	-	0.29	(0.28,0.32]	chr17	671252	3	SS3_PROX	SS3_PROX:INTRON	TRIM25	ENSG00000121060.19	ENST00000648772.1:ENST00000682766.1:ENST00000316881.9:ENST00000537230.3:ENST00000572021.6:ENST00000570473.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	177	2	2.95539	3.419555	3.88372	6.48314e-4	1.14218e-5	0.0232863	0.00249392
chr4	2411132	2411231	2099657	0	-	0.616162	(0.57,1]	chr4	207738	46	INTRON	INTRON	ZFYVE28	ENSG00000159733.14	ENST00000290974.7:ENST00000511071.5:ENST00000509171.5:ENST00000503000.1	protein_coding	protein_coding	protein_coding	protein_coding	2	38	2	3.02967	3.41945	3.80923	0.00471306	1.11529e-4	0.0631419	0.00945289
chr8	141419807	141419905	3878661	0	+	0.591837	(0.57,1]	chr8	356213	14	INTRON	INTRON	PTP4A3	ENSG00000184489.13	ENST00000520105.5:ENST00000521578.6:ENST00000523147.5:ENST00000329397.6:ENST00000349124.3:ENST00000680615.1:ENST00000681443.1	protein_coding	protein_coding	protein_coding	protein_coding	2	38	2	3.02967	3.41945	3.80923	0.00471306	1.11529e-4	0.0631419	0.00945289
chr2	202265872	202265941	984910	0	+	0.623188	(0.57,1]	chr2	105699	3	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	NOP58	ENSG00000055044.11	ENST00000488403.5:ENST00000426814.5:ENST00000264279.10:ENST00000472050.5:ENST00000492740.5:ENST00000467734.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	94	2	2.64388	3.41944	4.195	1.46112e-4	1.71438e-7	0.0105174	2.02516e-4
chr1	50573725	50573825	448376	0	-	0.38	(0.378,0.408]	chr1	54195	61	INTRON	INTRON	FAF1	ENSG00000185104.21	ENST00000396153.7:ENST00000494400.5:ENST00000472808.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	40	2	1.89621	3.419355	4.9425	0.0488044	0.00452675	0.173377	0.0595107
chr6	98929905	98930004	3165408	0	-	0.40404	(0.378,0.408]	chr6	295219	17	INTRON	INTRON	FBXL4	ENSG00000112234.9	ENST00000369244.7:ENST00000229971.2	protein_coding	protein_coding	protein_coding	protein_coding	2	40	2	1.89621	3.419355	4.9425	0.0488044	0.00452675	0.173377	0.0595107
chr2	20322798	20322896	1076500	0	-	0.295918	(0.28,0.32]	chr2	115021	38	INTRON	INTRON	PUM2	ENSG00000055917.16	ENST00000338086.9:ENST00000361078.7:ENST00000442400.5:ENST00000420234.5:ENST00000429419.6:ENST00000432105.5:ENST00000446940.5:ENST00000424110.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	77	2	1.4463	3.419325	5.39235	0.0388417	0.0024844	0.160515	0.0446195
chr19	4249628	4249728	7001556	0	+	0.47	(0.44,0.476]	chr19	694467	3	SS5_PROX	SS5_PROX:INTRON	YJU2	ENSG00000105248.16	ENST00000262962.12:ENST00000596496.1	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	2.86231	3.419285	3.97626	0.0300538	0.012214	0.142135	0.0910127
chr17	82248678	82248776	6852567	0	-	0.571429	(0.57,1]	chr17	679118	28	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	CSNK1D	ENSG00000141551.15	ENST00000584672.1:ENST00000398519.9:ENST00000314028.11:ENST00000581241.5:ENST00000584377.5:ENST00000392334.6:ENST00000578501.5:ENST00000581737.1:ENST00000580784.5:ENST00000269361.11:ENST00000403276.7:ENST00000580565.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	72	2	2.26008	3.4192349999999996	4.57839	0.0014773	5.97765e-7	0.0353237	4.5217e-4
chr3	169974614	169974712	1556557	0	+	0.346939	(0.32,0.35]	chr3	161215	49	INTRON	INTRON	SEC62	ENSG00000008952.17	ENST00000460513.5:ENST00000337002.9:ENST00000480708.5:ENST00000487736.5:ENST00000469515.6:ENST00000481435.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	47	2	1.77704	3.4192150000000003	5.06139	0.0719969	0.00179023	0.187322	0.0392749
chr14	28858778	28858877	5669216	0	+	0.525253	(0.515,0.57]	chr14	540339	3	INTRON	INTRON	LINC02327	ENSG00000258038.6	ENST00000671154.1:ENST00000656401.1:ENST00000657120.1:ENST00000551588.6:ENST00000658814.1:ENST00000657083.1:ENST00000660501.1:ENST00000655423.1:ENST00000670211.1:ENST00000664085.1:ENST00000667065.1:ENST00000657147.1:ENST00000665952.1:ENST00000660700.1	lncRNA	lncRNA	lncRNA	lncRNA	4	90	2	2.73346	3.419185	4.10491	8.38802e-4	3.09275e-5	0.0266487	0.00443703
chr2	47419609	47419709	773695	0	+	0.36	(0.35,0.378]	chr2	87267	28	INTRON	INTRON	MSH2	ENSG00000095002.15	ENST00000543555.6:ENST00000644092.1:ENST00000645339.1:ENST00000646415.1:ENST00000645506.1:ENST00000406134.5:ENST00000233146.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	70	2	3.25549	3.419175	3.58286	0.00363602	6.77448e-4	0.0535085	0.0236287
chr11	130140767	130140858	4886445	0	+	0.351648	(0.35,0.378]	chr11	457017	4	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	APLP2	ENSG00000084234.18	ENST00000650012.1:ENST00000533616.5:ENST00000338167.10:ENST00000528499.5:ENST00000263574.9:ENST00000345598.9:ENST00000278756.7:ENST00000533860.5:ENST00000530493.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	34	2	2.53856	3.419085	4.29961	0.0326077	0.0158483	0.133687	0.109464
chr14	51253045	51253144	5716411	0	+	0.373737	(0.35,0.378]	chr14	542902	29	INTRON	INTRON	TMX1	ENSG00000139921.13	ENST00000457354.7:ENST00000556683.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	34	2	2.53856	3.419085	4.29961	0.0326077	0.0158483	0.133687	0.109464
chr2	180725289	180725389	933910	0	+	0.37	(0.35,0.378]	chr2	102576	2	INTRON	INTRON	SCHLAP1	ENSG00000281131.1	ENST00000629145.1	lncRNA	lncRNA	lncRNA	lncRNA	1	34	2	2.53856	3.419085	4.29961	0.0326077	0.0158483	0.133687	0.109464
chr1	212774471	212774571	634607	0	-	0.33	(0.32,0.35]	chr1	74955	78	INTRON	INTRON	NSL1	ENSG00000117697.15	ENST00000366977.8:ENST00000366978.5:ENST00000366976.3:ENST00000626725.1	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	2.21917	3.4190300000000002	4.61889	0.0641245	0.0166646	0.199279	0.102621
chr10	74181581	74181681	4456072	0	+	0.35	(0.32,0.35]	chr10	411534	43	INTRON	INTRON	ADK	ENSG00000156110.15	ENST00000672429.1:ENST00000539909.6:ENST00000286621.7:ENST00000478611.2:ENST00000673352.1:ENST00000673310.1:ENST00000672920.1:ENST00000672394.1:ENST00000372734.5:ENST00000673027.1:ENST00000541550.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	32	2	2.21917	3.4190300000000002	4.61889	0.0641245	0.0166646	0.199279	0.102621
chr15	87415401	87415501	6253701	0	-	0.33	(0.32,0.35]	chr15	596790	882	INTRON	INTRON	ENSG00000259560	ENSG00000259560.2	ENST00000665121.1:ENST00000656130.1	lncRNA	lncRNA	lncRNA	lncRNA	1	32	2	2.21917	3.4190300000000002	4.61889	0.0641245	0.0166646	0.199279	0.102621
chr5	62479728	62479827	2363683	0	+	0.333333	(0.32,0.35]	chr5	227902	26	INTRON	INTRON	IPO11	ENSG00000086200.17	ENST00000424533.5:ENST00000325324.11:ENST00000409296.7:ENST00000507640.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	32	2	2.21917	3.4190300000000002	4.61889	0.0641245	0.0166646	0.199279	0.102621
chr8	99199045	99199145	3813137	0	+	0.33	(0.32,0.35]	chr8	353170	56	INTRON	INTRON	VPS13B	ENSG00000132549.20	ENST00000496144.5:ENST00000683334.1:ENST00000357162.7:ENST00000358544.7:ENST00000683619.1:ENST00000683869.1:ENST00000682153.1:ENST00000682358.1:ENST00000682145.1:ENST00000355155.6:ENST00000682234.1:ENST00000683486.1:ENST00000684308.1:ENST00000521932.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	32	2	2.21917	3.4190300000000002	4.61889	0.0641245	0.0166646	0.199279	0.102621
chr3	40526952	40527051	1402484	0	+	0.434343	(0.408,0.44]	chr3	147372	7	INTRON	INTRON	ZNF621	ENSG00000172888.12	ENST00000310898.5:ENST00000403205.6:ENST00000431278.5:ENST00000339296.10:ENST00000490457.5:ENST00000462161.5:ENST00000453351.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	65	2	3.33067	3.41899	3.50731	0.0024459	8.5918e-4	0.0445752	0.0265787
chr1	246624722	246624822	350570	0	+	0.39	(0.378,0.408]	chr1	40508	27	INTRON	INTRON	CNST	ENSG00000162852.14	ENST00000483271.1:ENST00000366513.9:ENST00000366512.7:ENST00000366511.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	63	2	1.78703	3.41897	5.05091	0.0240043	0.00118558	0.119664	0.031662
chr1	193166790	193166890	285069	0	+	0.46	(0.44,0.476]	chr1	32819	52	INTRON	INTRON	CDC73	ENSG00000134371.14	ENST00000649895.1:ENST00000643006.1:ENST00000367435.5:ENST00000650197.1:ENST00000648071.1:ENST00000635846.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	47	2	1.69402	3.4189	5.14378	0.0456129	0.00184943	0.164236	0.0388609
chr11	119011531	119011624	4874113	0	+	0.473118	(0.44,0.476]	chr11	455395	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CENATAC	ENSG00000186166.9	ENST00000334418.6:ENST00000524670.5:ENST00000526463.5:ENST00000532132.5:ENST00000580556.5:ENST00000528088.1:ENST00000583842.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	47	2	1.69402	3.4189	5.14378	0.0456129	0.00184943	0.164236	0.0388609
chr18	80141843	80141943	6938420	0	+	0.46	(0.44,0.476]	chr18	686214	16	INTRON	INTRON	ADNP2	ENSG00000101544.9	ENST00000561195.1	protein_coding	protein_coding	protein_coding	protein_coding	3	47	2	1.69402	3.4189	5.14378	0.0456129	0.00184943	0.164236	0.0388609
chr2	130170453	130170553	1227756	0	-	0.45	(0.44,0.476]	chr2	130780	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	SMPD4	ENSG00000136699.20	ENST00000431183.6:ENST00000454468.5:ENST00000680298.1:ENST00000351288.10:ENST00000433118.5:ENST00000412570.5:ENST00000409031.5:ENST00000439886.5:ENST00000680401.1:ENST00000680679.1:ENST00000680810.1:ENST00000680987.1:ENST00000430682.5:ENST00000435455.6:ENST00000451542.5:ENST00000680196.1:ENST00000473720.5:ENST00000439029.5:ENST00000681660.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	47	2	1.69402	3.4189	5.14378	0.0456129	0.00184943	0.164236	0.0388609
chr11	57499152	57499252	4953632	0	-	0.53	(0.515,0.57]	chr11	465037	2	SS5_PROX	SS5_PROX:INTRON	SLC43A1	ENSG00000149150.9	ENST00000278426.8:ENST00000528450.5:ENST00000525764.5:ENST00000533515.5:ENST00000530159.5:ENST00000533066.5:ENST00000524995.5:ENST00000534105.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	91	2	2.40178	3.418875	4.43597	0.00382306	3.82515e-6	0.0542786	0.00129308
chr13	20870000	20870100	5556021	0	-	0.51	(0.476,0.515]	chr13	531028	9	INTRON	INTRON	XPO4	ENSG00000132953.18	ENST00000255305.11:ENST00000490513.1:ENST00000465018.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	31	2	2.13854	3.41886	4.69918	0.0776563	0.00400966	0.196285	0.057767
chr14	102001681	102001781	5820626	0	+	0.49	(0.476,0.515]	chr14	552081	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	DYNC1H1	ENSG00000197102.14	ENST00000360184.10:ENST00000684561.1:ENST00000680313.1:ENST00000679720.1:ENST00000680715.1:ENST00000681283.1:ENST00000681822.1:ENST00000679910.1:ENST00000681574.1:ENST00000645039.2:ENST00000645149.2:ENST00000680200.1:ENST00000680120.1:ENST00000644881.2:ENST00000681066.1:ENST00000680423.1:ENST00000681536.1:ENST00000679486.1:ENST00000681010.1:ENST00000679629.1:ENST00000681123.1:ENST00000680874.1:ENST00000680137.1:ENST00000643508.2:ENST00000680808.1:ENST00000681311.1:ENST00000681859.1:ENST00000643684.1:ENST00000643958.2:ENST00000680001.1:ENST00000681668.1:ENST00000645114.2:ENST00000681751.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	31	2	2.13854	3.41886	4.69918	0.0776563	0.00400966	0.196285	0.057767
chr15	72699135	72699235	6060602	0	+	0.49	(0.476,0.515]	chr15	576961	7	INTRON	INTRON	BBS4	ENSG00000140463.14	ENST00000395205.6:ENST00000566400.5:ENST00000565160.5:ENST00000561914.5:ENST00000268057.9:ENST00000567279.5:ENST00000566938.5:ENST00000569440.5:ENST00000563600.5:ENST00000562084.5:ENST00000569338.5:ENST00000566829.1:ENST00000564239.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	31	2	2.13854	3.41886	4.69918	0.0776563	0.00400966	0.196285	0.057767
chr17	49799844	49799943	6625428	0	+	0.484848	(0.476,0.515]	chr17	646735	9	INTRON	INTRON	KAT7	ENSG00000136504.13	ENST00000675278.1:ENST00000259021.9:ENST00000454930.6:ENST00000509773.5:ENST00000510819.5:ENST00000424009.6:ENST00000509124.5:ENST00000435742.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	31	2	2.13854	3.41886	4.69918	0.0776563	0.00400966	0.196285	0.057767
chr19	10320454	10320554	7135372	0	-	0.5	(0.476,0.515]	chr19	719339	4	SS5_PROX	SS5_PROX:INTRON	RAVER1	ENSG00000161847.14	ENST00000617231.5:ENST00000592208.5:ENST00000611074.4:ENST00000615032.4:ENST00000585935.5:ENST00000593136.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	31	2	2.13854	3.41886	4.69918	0.0776563	0.00400966	0.196285	0.057767
chr20	63871798	63871896	7300752	0	+	0.510204	(0.476,0.515]	chr20	743096	20	INTRON	INTRON	TPD52L2	ENSG00000101150.18	ENST00000611972.4:ENST00000615907.4:ENST00000369927.8:ENST00000346249.9:ENST00000348257.9:ENST00000352482.8:ENST00000351424.8:ENST00000217121.9:ENST00000358548.4	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	2.13854	3.41886	4.69918	0.0776563	0.00400966	0.196285	0.057767
chr4	53053147	53053247	2142208	0	-	0.49	(0.476,0.515]	chr4	211159	1319	INTRON	INTRON	SCFD2	ENSG00000184178.17	ENST00000401642.8:ENST00000388940.8	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	2.13854	3.41886	4.69918	0.0776563	0.00400966	0.196285	0.057767
chr6	166341224	166341323	3263107	0	-	0.494949	(0.476,0.515]	chr6	302947	95	INTRON	INTRON	SFT2D1	ENSG00000198818.10	ENST00000361731.4:ENST00000487841.5:ENST00000478705.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	31	2	2.13854	3.41886	4.69918	0.0776563	0.00400966	0.196285	0.057767
chr8	6727625	6727725	3695195	0	+	0.51	(0.476,0.515]	chr8	342834	23	INTRON	INTRON	AGPAT5	ENSG00000155189.12	ENST00000285518.11:ENST00000523234.5:ENST00000518327.1:ENST00000523586.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	31	2	2.13854	3.41886	4.69918	0.0776563	0.00400966	0.196285	0.057767
chr10	102153627	102153727	4512513	0	+	0.39	(0.378,0.408]	chr10	415623	7	INTRON	INTRON	NOLC1	ENSG00000166197.17	ENST00000405356.5:ENST00000605788.6:ENST00000464969.6:ENST00000603946.5:ENST00000488254.6:ENST00000461421.5:ENST00000476468.5:ENST00000370007.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	69	2	3.22599	3.4187849999999997	3.61158	0.00288652	8.34292e-4	0.0494641	0.0266389
chr1	8792103	8792203	373529	0	-	0.27	[0,0.28]	chr1	43550	3	SS5_PROX	SS5_PROX:INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000656437.1:ENST00000659924.1	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	2.29142	3.41876	4.5461	0.0592143	0.0365918	0.189982	0.138959
chr10	74043253	74043353	4454954	0	+	0.19	[0,0.28]	chr10	411396	1	SS5_PROX	SS5_PROX:INTRON	VCL	ENSG00000035403.18	ENST00000623461.3:ENST00000372755.7:ENST00000624354.3:ENST00000211998.10:ENST00000478896.2:ENST00000461383.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	36	2	2.29142	3.41876	4.5461	0.0592143	0.0365918	0.189982	0.138959
chr11	74230499	74230594	4827121	0	+	0.252632	[0,0.28]	chr11	450483	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PPME1	ENSG00000214517.10	ENST00000328257.13:ENST00000398427.6	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	2.29142	3.41876	4.5461	0.0592143	0.0365918	0.189982	0.138959
chr12	62395096	62395196	5150926	0	+	0.2	[0,0.28]	chr12	487419	15	INTRON	INTRON	USP15	ENSG00000135655.16	ENST00000353364.7:ENST00000280377.10:ENST00000549415.1:ENST00000548620.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	36	2	2.29142	3.41876	4.5461	0.0592143	0.0365918	0.189982	0.138959
chr2	197869400	197869500	969750	0	+	0.22	[0,0.28]	chr2	104858	587	INTRON	INTRON	PLCL1	ENSG00000115896.16	ENST00000428675.6:ENST00000435320.1:ENST00000487695.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	36	2	2.29142	3.41876	4.5461	0.0592143	0.0365918	0.189982	0.138959
chr6	104960583	104960683	2929886	0	+	0.24	[0,0.28]	chr6	276110	19	INTRON	INTRON	LIN28B	ENSG00000187772.8	ENST00000635857.1:ENST00000637759.1:ENST00000345080.5	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	2.29142	3.41876	4.5461	0.0592143	0.0365918	0.189982	0.138959
chr7	87844263	87844363	3566047	0	-	0.28	[0,0.28]	chr7	332291	4	SS3_PROX	SS3_PROX:INTRON	SLC25A40	ENSG00000075303.13	ENST00000341119.10:ENST00000429674.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	36	2	2.29142	3.41876	4.5461	0.0592143	0.0365918	0.189982	0.138959
chr7	156760639	156760739	3686677	0	-	0.27	[0,0.28]	chr7	342033	38	INTRON	INTRON	LMBR1	ENSG00000105983.23	ENST00000353442.10:ENST00000448926.5:ENST00000415428.5:ENST00000454132.5:ENST00000434503.5:ENST00000477983.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	36	2	2.29142	3.41876	4.5461	0.0592143	0.0365918	0.189982	0.138959
chr8	92784175	92784275	3989947	0	-	0.2	[0,0.28]	chr8	365352	187	INTRON	INTRON	FLJ46284	ENSG00000248858.7	ENST00000504861.2	lncRNA	lncRNA	lncRNA	lncRNA	1	36	2	2.29142	3.41876	4.5461	0.0592143	0.0365918	0.189982	0.138959
chr7	105121106	105121205	3601200	0	-	0.515152	(0.476,0.515]	chr7	336054	27	INTRON	INTRON	SRPK2	ENSG00000135250.17	ENST00000465072.5:ENST00000393651.8:ENST00000357311.7:ENST00000466917.1:ENST00000485455.1:ENST00000477925.5:ENST00000489828.5:ENST00000474770.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	47	2	1.80284	3.4187499999999997	5.03466	0.033161	0.00252065	0.145899	0.0446195
chr10	68383097	68383197	4638907	0	-	0.51	(0.476,0.515]	chr10	426566	13	INTRON	INTRON	RUFY2	ENSG00000204130.14	ENST00000466493.5:ENST00000602465.6:ENST00000388768.6:ENST00000399200.7:ENST00000454950.6:ENST00000472394.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	47	2	1.74317	3.4187	5.09423	0.0396373	0.00204588	0.161534	0.04086
chr17	40164761	40164857	6609374	0	+	0.5	(0.476,0.515]	chr17	643693	2	INTRON	INTRON	CASC3	ENSG00000108349.17	ENST00000418132.7:ENST00000264645.12:ENST00000474190.1:ENST00000577605.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	58	2	2.14389	3.418545	4.6932	0.00753088	0.00540862	0.074841	0.066545000000000007
chr17	20034091	20034191	6572034	0	+	0.48	(0.476,0.515]	chr17	639055	156	INTRON	INTRON	SPECC1	ENSG00000128487.19	ENST00000677148.1:ENST00000679048.1:ENST00000678019.1:ENST00000678315.1:ENST00000678321.1:ENST00000676570.1:ENST00000678651.1:ENST00000679049.1:ENST00000472876.5:ENST00000467722.3:ENST00000583528.6:ENST00000680019.1:ENST00000395527.9:ENST00000681593.1:ENST00000680830.1:ENST00000680124.1:ENST00000583482.7:ENST00000679255.1:ENST00000681202.1:ENST00000677914.1:ENST00000578321.2:ENST00000680374.1:ENST00000583463.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	31	2	2.40608	3.418505	4.43093	0.0425709	0.00931369	0.148082	0.0855292
chr17	36586737	36586827	6602285	0	+	0.477778	(0.476,0.515]	chr17	642591	7	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	GGNBP2	ENSG00000278311.5	ENST00000613102.5:ENST00000612563.1:ENST00000615952.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	31	2	2.40608	3.418505	4.43093	0.0425709	0.00931369	0.148082	0.0855292
chr2	31907565	31907664	1090080	0	-	0.484848	(0.476,0.515]	chr2	116879	139	INTRON	INTRON	MEMO1:DPY30	ENSG00000162959.14:ENSG00000162961.14	ENST00000295065.9:ENST00000446765.5:ENST00000404530.6:ENST00000379383.7:ENST00000490459.5:ENST00000426310.6:ENST00000422936.5:ENST00000413686.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	31	2	2.40608	3.418505	4.43093	0.0425709	0.00931369	0.148082	0.0855292
chr22	49525078	49525178	7601330	0	-	0.5	(0.476,0.515]	chr22	778566	835	INTRON	INTRON	MIR3667HG	ENSG00000188511.13	ENST00000414287.5:ENST00000416411.1	lncRNA	lncRNA	lncRNA	lncRNA	1	31	2	2.40608	3.418505	4.43093	0.0425709	0.00931369	0.148082	0.0855292
chr3	170365910	170366010	1558243	0	+	0.49	(0.476,0.515]	chr3	161435	41	INTRON	INTRON	SKIL	ENSG00000136603.14	ENST00000259119.9:ENST00000426052.6:ENST00000458537.7:ENST00000413427.6:ENST00000470571.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	31	2	2.40608	3.418505	4.43093	0.0425709	0.00931369	0.148082	0.0855292
chr4	2583301	2583401	1912983	0	+	0.49	(0.476,0.515]	chr4	191976	458	INTRON	INTRON	RNF4:FAM193A	ENSG00000063978.16:ENSG00000125386.16	ENST00000508235.1:ENST00000637812.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	31	2	2.40608	3.418505	4.43093	0.0425709	0.00931369	0.148082	0.0855292
chr7	30578905	30579005	3513274	0	-	0.49	(0.476,0.515]	chr7	327591	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	GARS1-DT	ENSG00000196295.13	ENST00000426529.6:ENST00000656284.1:ENST00000660767.1:ENST00000584199.5:ENST00000667338.1:ENST00000581794.6:ENST00000581665.6:ENST00000663944.1:ENST00000584372.5:ENST00000582733.5:ENST00000667129.1:ENST00000584023.2:ENST00000579174.5:ENST00000689508.1:ENST00000580440.7:ENST00000454922.6:ENST00000667137.1:ENST00000657049.1:ENST00000578994.5:ENST00000583664.5:ENST00000582549.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	1	31	2	2.40608	3.418505	4.43093	0.0425709	0.00931369	0.148082	0.0855292
chr18	2719630	2719729	6865527	0	+	0.494949	(0.476,0.515]	chr18	680043	8	INTRON	INTRON	SMCHD1	ENSG00000101596.17	ENST00000320876.11:ENST00000688342.1:ENST00000693213.1:ENST00000577880.5:ENST00000584897.5:ENST00000581711.1:ENST00000583441.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	133	2	2.45353	3.4184600000000005	4.38339	9.04659e-4	8.08784e-6	0.0278365	0.00204092
chr7	73577381	73577472	3555447	0	-	0.538462	(0.515,0.57]	chr7	330917	3	INTRON	INTRON	TBL2	ENSG00000106638.18	ENST00000305632.11:ENST00000450285.5:ENST00000424598.5:ENST00000459913.5:ENST00000417008.5:ENST00000432538.5:ENST00000433464.5:ENST00000426966.5:ENST00000452475.5:ENST00000437521.5:ENST00000435792.5:ENST00000452125.5:ENST00000476136.5:ENST00000479892.5:ENST00000465279.5:ENST00000496056.5:ENST00000468669.5:ENST00000458466.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	40	2	2.43783	3.418415	4.399	0.00916404	0.00708863	0.0812949	0.0754923
chr1	35734502	35734601	422520	0	-	0.454545	(0.44,0.476]	chr1	50898	25	UTR3	UTR3:EXON_MRNA:INTRON	CLSPN	ENSG00000092853.14	ENST00000251195.9:ENST00000318121.8	protein_coding	protein_coding	protein_coding	protein_coding	2	42	2	1.83899	3.418405	4.99782	0.0589734	0.0013223	0.167915	0.0333932
chr3	183650356	183650456	1579939	0	+	0.45	(0.44,0.476]	chr3	162979	1	CDS_START	CDS_START:CDS:EXON_MRNA:INTRON	KLHL24	ENSG00000114796.16	ENST00000493074.1:ENST00000437402.5:ENST00000454495.6:ENST00000242810.11:ENST00000454652.6:ENST00000482138.1:ENST00000427201.2:ENST00000468101.5:ENST00000473045.5:ENST00000475827.5:ENST00000468001.1:ENST00000476808.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	42	2	2.59888	3.418215	4.23755	0.0263357	0.00487719	0.122221	0.0640618
chr13	99536307	99536407	5527226	0	+	0.39	(0.378,0.408]	chr13	528358	3	SS3_PROX	SS3_PROX:INTRON	TM9SF2	ENSG00000125304.10	ENST00000642475.1:ENST00000376387.5:ENST00000463709.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	107	2	2.92764	3.418135	3.90863	3.01906e-4	2.19981e-4	0.0155054	0.0135522
chr20	33671810	33671897	7329049	0	-	0.517241	(0.515,0.57]	chr20	746417	7	INTRON	INTRON	NECAB3	ENSG00000125967.17	ENST00000375238.8:ENST00000246190.11:ENST00000488489.5:ENST00000485399.5:ENST00000606690.5:ENST00000439478.5:ENST00000607805.5:ENST00000493590.1:ENST00000606699.5:ENST00000484824.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	38	2	2.15051	3.418095	4.68568	0.0238113	0.00270027	0.118889	0.0479115
chr6	37950496	37950596	2858341	0	+	0.55	(0.515,0.57]	chr6	270231	201	INTRON	INTRON	ZFAND3	ENSG00000156639.12	ENST00000287218.9:ENST00000373391.6:ENST00000474522.5:ENST00000373389.5	protein_coding	protein_coding	protein_coding	protein_coding	2	38	2	2.15051	3.418095	4.68568	0.0238113	0.00270027	0.118889	0.0479115
chrX	21954929	21955028	7629998	0	+	0.525253	(0.515,0.57]	chrX	781289	132	INTRON	INTRON	SMS	ENSG00000102172.16	ENST00000404933.7:ENST00000379404.5:ENST00000478094.1:ENST00000457085.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	38	2	2.15051	3.418095	4.68568	0.0238113	0.00270027	0.118889	0.0479115
chr2	20305377	20305477	1076320	0	-	0.46	(0.44,0.476]	chr2	114994	73	INTRON	INTRON	PUM2	ENSG00000055917.16	ENST00000338086.9:ENST00000361078.7:ENST00000440577.5	protein_coding	protein_coding	protein_coding	protein_coding	4	103	2	2.93704	3.4179950000000003	3.89895	2.76819e-4	2.02261e-4	0.0148174	0.0129814
chr1	46354026	46354125	96812	0	+	0.191919	[0,0.28]	chr1	13015	6	INTRON	INTRON	NSUN4	ENSG00000117481.11	ENST00000307089.7:ENST00000486270.5:ENST00000474844.6:ENST00000537428.2:ENST00000498008.5:ENST00000495427.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	149	2	2.78378	3.417945	4.05211	0.00105071	2.98802e-4	0.0298884	0.0160416
chr7	12374909	12375009	3485139	0	-	0.24	[0,0.28]	chr7	325925	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	VWDE	ENSG00000146530.15	ENST00000275358.8:ENST00000452576.6:ENST00000521169.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	149	2	2.78378	3.417945	4.05211	0.00105071	2.98802e-4	0.0298884	0.0160416
chr12	70247115	70247215	5166468	0	+	0.37	(0.35,0.378]	chr12	489374	24	INTRON	INTRON	CNOT2	ENSG00000111596.14	ENST00000547780.5:ENST00000418359.7:ENST00000552319.5:ENST00000550160.5:ENST00000551661.5:ENST00000551132.5:ENST00000553078.5:ENST00000548021.5:ENST00000550641.6:ENST00000229195.8:ENST00000552915.5:ENST00000549443.5:ENST00000548741.5:ENST00000552483.5:ENST00000552422.5:ENST00000551179.1:ENST00000547321.5:ENST00000553020.5:ENST00000548159.5:ENST00000549750.5:ENST00000551043.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	182	2	3.15619	3.4179250000000003	3.67966	1.67166e-4	3.56547e-6	0.0118717	0.0012287
chr17	62007518	62007615	6810292	0	-	0.525773	(0.515,0.57]	chr17	672913	1	INTRON	INTRON	MED13	ENSG00000108510.10	ENST00000397786.7	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	2.23915	3.417725	4.5963	0.0596178	0.00370287	0.16883600000000001	0.0561162
chr21	15024242	15024341	7431854	0	-	0.525253	(0.515,0.57]	chr21	757984	94	INTRON	INTRON	NRIP1	ENSG00000180530.11	ENST00000400202.5:ENST00000318948.7:ENST00000400199.5:ENST00000638122.1:ENST00000637963.1:ENST00000637630.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	28	2	2.23915	3.417725	4.5963	0.0596178	0.00370287	0.16883600000000001	0.0561162
chr22	41862433	41862533	7526291	0	+	0.55	(0.515,0.57]	chr22	769353	287	INTRON	INTRON	SREBF2	ENSG00000198911.12	ENST00000612482.4:ENST00000361204.9:ENST00000424354.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	28	2	2.23915	3.417725	4.5963	0.0596178	0.00370287	0.16883600000000001	0.0561162
chr3	49401423	49401523	1693957	0	-	0.57	(0.515,0.57]	chr3	173707	255	INTRON	INTRON	RHOA	ENSG00000067560.14	ENST00000678200.1:ENST00000422781.6:ENST00000676712.2:ENST00000678921.2:ENST00000445425.6:ENST00000454011.7:ENST00000418115.6:ENST00000679208.1:ENST00000677684.1:ENST00000431929.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	28	2	2.23915	3.417725	4.5963	0.0596178	0.00370287	0.16883600000000001	0.0561162
chr9	120577126	120577226	4333867	0	-	0.52	(0.515,0.57]	chr9	398171	47	INTRON	INTRON	CDK5RAP2	ENSG00000136861.19	ENST00000349780.9:ENST00000360190.8:ENST00000687279.1:ENST00000687633.1:ENST00000690814.1:ENST00000693714.1:ENST00000693386.1:ENST00000686376.1:ENST00000692155.1:ENST00000690646.1:ENST00000693433.1:ENST00000473282.6:ENST00000480112.5:ENST00000685866.1:ENST00000689688.1:ENST00000416449.6:ENST00000691504.1:ENST00000360822.8:ENST00000693728.1:ENST00000690474.1:ENST00000693137.1:ENST00000481266.2:ENST00000472883.2:ENST00000491334.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	28	2	2.23915	3.417725	4.5963	0.0596178	0.00370287	0.16883600000000001	0.0561162
chr3	48018318	48018418	1686794	0	-	0.29	(0.28,0.32]	chr3	172280	20	INTRON	INTRON	MAP4	ENSG00000047849.22	ENST00000395734.7:ENST00000426837.6:ENST00000360240.10:ENST00000423088.5:ENST00000439356.2:ENST00000468075.2	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	2.80157	3.41751	4.03345	0.0704058	0.0147132	0.184298	0.106558
chr5	115609009	115609109	2707545	0	-	0.3	(0.28,0.32]	chr5	254777	273	INTRON	INTRON	TMED7-TICAM2	ENSG00000251201.8	ENST00000282382.8:ENST00000333314.3:ENST00000514548.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	35	2	2.80157	3.41751	4.03345	0.0704058	0.0147132	0.184298	0.106558
chr7	152052107	152052207	3449775	0	+	0.31	(0.28,0.32]	chr7	322435	240	INTRON	INTRON	GALNT11	ENSG00000178234.13	ENST00000430044.7:ENST00000482812.1:ENST00000431668.1:ENST00000446096.5:ENST00000447778.5:ENST00000423337.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	35	2	2.80157	3.41751	4.03345	0.0704058	0.0147132	0.184298	0.106558
chr3	186969392	186969492	1586565	0	+	0.38	(0.378,0.408]	chr3	164332	51	INTRON	INTRON	ST6GAL1	ENSG00000073849.16	ENST00000676786.1:ENST00000169298.8:ENST00000457772.6:ENST00000455441.5:ENST00000427315.5:ENST00000677292.1:ENST00000458216.5:ENST00000430309.5:ENST00000417392.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	48	2	1.89251	3.417505	4.9425	0.0251428	0.00452675	0.133404	0.0595107
chr10	124937359	124937458	4535463	0	+	0.565657	(0.515,0.57]	chr10	418562	197	INTRON	INTRON	ENSG00000249456	ENSG00000249456.1	ENST00000508096.1	lncRNA	lncRNA	lncRNA	lncRNA	1	28	2	2.43589	3.417445	4.399	0.0370871	0.00708863	0.139194	0.0754923
chr16	12701030	12701130	6446830	0	-	0.52	(0.515,0.57]	chr16	621147	356	INTRON	INTRON	CPPED1	ENSG00000103381.12	ENST00000381774.9:ENST00000433677.6:ENST00000261660.4	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	2.43589	3.417445	4.399	0.0370871	0.00708863	0.139194	0.0754923
chr2	69894893	69894993	805289	0	+	0.56	(0.515,0.57]	chr2	89869	4	SS3_PROX	SS3_PROX:INTRON	SNRNP27	ENSG00000124380.11	ENST00000244227.8:ENST00000409116.5:ENST00000450162.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	28	2	2.43589	3.417445	4.399	0.0370871	0.00708863	0.139194	0.0754923
chr22	46789137	46789211	7535450	0	+	0.527027	(0.515,0.57]	chr22	770553	1	SS3_PROX	SS3_PROX:SS5_PROX:INTRON	TBC1D22A	ENSG00000054611.14	ENST00000380995.5:ENST00000337137.9:ENST00000441936.5:ENST00000486163.5:ENST00000407381.7:ENST00000355704.7:ENST00000394449.6:ENST00000496139.5:ENST00000472791.5:ENST00000441162.5:ENST00000406733.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	28	2	2.43589	3.417445	4.399	0.0370871	0.00708863	0.139194	0.0754923
chr10	60785428	60785495	4435840	0	+	0.358209	(0.35,0.378]	chr10	409181	2	SS3_PROX	SS3_PROX:INTRON	CDK1	ENSG00000170312.17	ENST00000519078.6:ENST00000475504.6:ENST00000316629.8:ENST00000395284.8:ENST00000448257.6:ENST00000373809.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	32	2	2.86451	3.417415	3.97032	0.0578667	0.0109111	0.167723	0.0923273
chr17	16467122	16467221	6562934	0	+	0.363636	(0.35,0.378]	chr17	637939	24	INTRON	INTRON	SNHG29	ENSG00000175061.19	ENST00000584177.5:ENST00000665646.1:ENST00000660419.1:ENST00000668333.1:ENST00000664939.1:ENST00000583400.7:ENST00000669136.1:ENST00000580770.5:ENST00000581718.6:ENST00000579473.6:ENST00000581361.5:ENST00000658943.1	lncRNA	lncRNA	lncRNA	lncRNA	1	32	2	2.86451	3.417415	3.97032	0.0578667	0.0109111	0.167723	0.0923273
chr17	57998132	57998232	6799958	0	-	0.52	(0.515,0.57]	chr17	671423	34	INTRON	INTRON	ENSG00000266086	ENSG00000266086.3	ENST00000578794.2:ENST00000665125.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	14	264	2	2.50017	3.417265	4.33436	3.34825e-5	2.59801e-8	0.00463632	5.53174e-5
chr6	20559484	20559578	2828635	0	+	0.340426	(0.32,0.35]	chr6	265648	11	UTR3	UTR3:EXON_MRNA:INTRON	CDKAL1	ENSG00000145996.11	ENST00000274695.8:ENST00000613575.4:ENST00000378610.1	protein_coding	protein_coding	protein_coding	protein_coding	4	120	2	3.00559	3.417215	3.82884	4.19685e-4	2.41032e-4	0.018968	0.0136674
chr2	65403607	65403706	1143907	0	-	0.444444	(0.44,0.476]	chr2	122242	260	INTRON	INTRON	SPRED2	ENSG00000198369.10	ENST00000356388.9:ENST00000440972.1	protein_coding	protein_coding	protein_coding	protein_coding	2	65	2	3.36231	3.417055	3.4718	0.00161678	0.00136358	0.0369204	0.0336321
chr4	56479448	56479547	1963043	0	+	0.393939	(0.378,0.408]	chr4	196958	4	INTRON	INTRON	SRP72	ENSG00000174780.17	ENST00000642900.1:ENST00000510663.6:ENST00000505314.2	protein_coding	protein_coding	protein_coding	protein_coding	2	67	2	3.35998	3.416875	3.47377	0.00230615	0.00103087	0.0428247	0.0294094
chr7	50322575	50322674	3316881	0	+	0.393939	(0.378,0.408]	chr7	308256	31	INTRON	INTRON	IKZF1	ENSG00000185811.20	ENST00000642219.1:ENST00000645066.1:ENST00000484847.6:ENST00000646110.1:ENST00000331340.8:ENST00000413698.5:ENST00000349824.8:ENST00000343574.9:ENST00000357364.8:ENST00000440768.6:ENST00000346667.8:ENST00000615491.4:ENST00000359197.9:ENST00000439701.2:ENST00000438033.5:ENST00000492782.6:ENST00000462201.1:ENST00000641948.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	67	2	3.35998	3.416875	3.47377	0.00230615	0.00103087	0.0428247	0.0294094
chr9	68743157	68743256	4134442	0	+	0.373737	(0.35,0.378]	chr9	376886	1	INTRON	INTRON	PIP5K1B	ENSG00000107242.20	ENST00000265382.8:ENST00000541509.5:ENST00000472907.6:ENST00000377284.5:ENST00000437200.5:ENST00000478500.3:ENST00000440050.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	70	2	3.33403	3.41685	3.49967	0.00272701	9.80974e-4	0.0467523	0.0287765
chr11	6484090	6484189	4727792	0	+	0.525253	(0.515,0.57]	chr11	437617	20	UTR3	UTR3:EXON_MRNA	TIMM10B	ENSG00000132286.12	ENST00000254616.11	protein_coding	protein_coding	protein_coding	protein_coding	4	90	2	2.50953	3.4168499999999997	4.32417	0.0023952	7.95528e-6	0.0440612	0.0020223
chr12	50422979	50423079	5136557	0	+	0.53	(0.515,0.57]	chr12	484374	17	INTRON	INTRON	LARP4	ENSG00000161813.23	ENST00000550522.5:ENST00000293618.12:ENST00000429001.7:ENST00000398473.7:ENST00000548174.5:ENST00000548697.5:ENST00000548993.5:ENST00000522085.5:ENST00000518444.5:ENST00000551886.5:ENST00000523389.5:ENST00000518561.5:ENST00000347328.9:ENST00000550260.1:ENST00000517559.5:ENST00000552445.1	protein_coding	protein_coding	protein_coding	protein_coding	3	75	2	2.763	3.41684	4.07068	0.00257143	3.78716e-5	0.045134	0.00493296
chr10	73494604	73494704	4650141	0	-	0.22	[0,0.28]	chr10	427923	147	INTRON	INTRON	PPP3CB	ENSG00000107758.16	ENST00000360663.10:ENST00000394828.6:ENST00000394829.6:ENST00000342558.3	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	2.36637	3.4168149999999997	4.46726	0.0500615	0.0427997	0.17488	0.148082
chr11	18405048	18405148	4749810	0	+	0.23	[0,0.28]	chr11	439761	2	SS3_PROX	SS3_PROX:INTRON	LDHA	ENSG00000134333.14	ENST00000396222.6:ENST00000430553.6:ENST00000422447.8:ENST00000545215.5:ENST00000541097.5:ENST00000227157.8:ENST00000540430.5:ENST00000379412.9:ENST00000542179.1:ENST00000486690.6:ENST00000537296.5:ENST00000375710.7:ENST00000538451.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	36	2	2.36637	3.4168149999999997	4.46726	0.0500615	0.0427997	0.17488	0.148082
chr11	47808295	47808395	4951751	0	-	0.25	[0,0.28]	chr11	464556	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	NUP160	ENSG00000030066.14	ENST00000694866.1:ENST00000378460.7:ENST00000530326.5:ENST00000528071.5	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	2.36637	3.4168149999999997	4.46726	0.0500615	0.0427997	0.17488	0.148082
chr2	97502110	97502210	1183333	0	-	0.24	[0,0.28]	chr2	126861	89	INTRON	INTRON	ANKRD36B	ENSG00000196912.13	ENST00000359901.9:ENST00000488634.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	36	2	2.36637	3.4168149999999997	4.46726	0.0500615	0.0427997	0.17488	0.148082
chr2	161326857	161326957	901296	0	+	0.19	[0,0.28]	chr2	99704	76	INTRON	INTRON	PSMD14	ENSG00000115233.12	ENST00000409682.8:ENST00000437630.1	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	2.36637	3.4168149999999997	4.46726	0.0500615	0.0427997	0.17488	0.148082
chr2	175940787	175940887	1272582	0	-	0.24	[0,0.28]	chr2	134539	4	SS5_PROX	SS5_PROX:INTRON	LNPK	ENSG00000144320.14	ENST00000272748.9:ENST00000544803.5:ENST00000409660.5:ENST00000431754.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	36	2	2.36637	3.4168149999999997	4.46726	0.0500615	0.0427997	0.17488	0.148082
chr3	143044074	143044173	1529533	0	+	0.272727	[0,0.28]	chr3	159459	4	INTRON	INTRON	U2SURP	ENSG00000163714.18	ENST00000488497.7:ENST00000473835.7:ENST00000493598.6:ENST00000463563.6:ENST00000480029.5:ENST00000467348.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	36	2	2.36637	3.4168149999999997	4.46726	0.0500615	0.0427997	0.17488	0.148082
chr8	38299794	38299892	3936582	0	-	0.27551	[0,0.28]	chr8	360746	1	SS3_PROX	SS3_PROX:INTRON	NSD3	ENSG00000147548.17	ENST00000317025.13:ENST00000433384.6:ENST00000527502.5	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	2.36637	3.4168149999999997	4.46726	0.0500615	0.0427997	0.17488	0.148082
chr10	7359526	7359626	4552419	0	-	0.39	(0.378,0.408]	chr10	420235	108	INTRON	INTRON	SFMBT2	ENSG00000198879.13	ENST00000397167.6:ENST00000361972.8:ENST00000684547.1:ENST00000683762.1:ENST00000673876.1:ENST00000682896.1:ENST00000379713.8:ENST00000682101.1:ENST00000379711.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	32	2	2.2259	3.416805	4.60771	0.0662381	0.00567576	0.181924	0.0678837
chr11	119131050	119131147	4874810	0	+	0.391753	(0.378,0.408]	chr11	455642	2	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HINFP	ENSG00000172273.13	ENST00000350777.7:ENST00000529354.1:ENST00000531360.5:ENST00000527354.5:ENST00000527410.3:ENST00000532312.2:ENST00000531022.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	32	2	2.2259	3.416805	4.60771	0.0662381	0.00567576	0.181924	0.0678837
chr17	49341608	49341708	6792345	0	-	0.38	(0.378,0.408]	chr17	670175	187	INTRON	INTRON	ZNF652	ENSG00000198740.9	ENST00000430262.3:ENST00000508237.5:ENST00000362063.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	32	2	2.2259	3.416805	4.60771	0.0662381	0.00567576	0.181924	0.0678837
chr17	63720711	63720810	6811462	0	-	0.393939	(0.378,0.408]	chr17	673105	17	INTRON	INTRON	STRADA	ENSG00000266173.7	ENST00000640870.1:ENST00000639835.1:ENST00000638708.1:ENST00000336174.12:ENST00000375840.9:ENST00000640999.1:ENST00000245865.10:ENST00000638702.1:ENST00000447001.8:ENST00000640979.1:ENST00000392950.9:ENST00000640086.1:ENST00000640679.1:ENST00000638276.1:ENST00000638888.1:ENST00000640827.1:ENST00000640397.1:ENST00000638698.1:ENST00000638193.1:ENST00000582137.6:ENST00000580039.6:ENST00000639521.1:ENST00000579340.5:ENST00000578801.6:ENST00000640174.1:ENST00000638309.1:ENST00000640183.1:ENST00000639135.1:ENST00000578008.6:ENST00000581243.6:ENST00000640741.1:ENST00000639192.1:ENST00000640707.1:ENST00000639603.1:ENST00000638718.1:ENST00000581505.6:ENST00000577375.5:ENST00000579549.6:ENST00000639816.1:ENST00000580338.5:ENST00000639778.1:ENST00000582030.5:ENST00000639164.1:ENST00000580288.2:ENST00000584110.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	32	2	2.2259	3.416805	4.60771	0.0662381	0.00567576	0.181924	0.0678837
chr2	20296470	20296567	1076230	0	-	0.391753	(0.378,0.408]	chr2	114988	16	INTRON	INTRON	PUM2	ENSG00000055917.16	ENST00000338086.9:ENST00000361078.7:ENST00000440577.5	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	2.2259	3.416805	4.60771	0.0662381	0.00567576	0.181924	0.0678837
chr5	7893506	7893578	2316940	0	+	0.388889	(0.378,0.408]	chr5	224470	1	EXON_LNCRNA	EXON_LNCRNA:INTRON	MTRR	ENSG00000124275.15	ENST00000264668.6:ENST00000513439.5:ENST00000511461.5:ENST00000440940.7:ENST00000510525.5:ENST00000507414.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	32	2	2.2259	3.416805	4.60771	0.0662381	0.00567576	0.181924	0.0678837
chr6	10914721	10914821	2812037	0	+	0.38	(0.378,0.408]	chr6	264614	14	INTRON	INTRON	SYCP2L	ENSG00000153157.13	ENST00000341041.8:ENST00000283141.11:ENST00000543878.5:ENST00000487561.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	32	2	2.2259	3.416805	4.60771	0.0662381	0.00567576	0.181924	0.0678837
chr2	168835223	168835322	905860	0	+	0.474747	(0.44,0.476]	chr2	99891	5	INTRON	INTRON	NOSTRIN	ENSG00000163072.16	ENST00000458381.6:ENST00000444448.6:ENST00000445023.6:ENST00000397206.6:ENST00000317647.12:ENST00000397209.6:ENST00000447264.2	protein_coding	protein_coding	protein_coding	protein_coding	3	52	2	1.90381	3.416745	4.92968	0.0260626	0.00171443	0.122153	0.0381936
chr12	70257985	70258085	5166577	0	+	0.21	[0,0.28]	chr12	489374	133	INTRON	INTRON	CNOT2	ENSG00000111596.14	ENST00000547780.5:ENST00000418359.7:ENST00000552319.5:ENST00000550160.5:ENST00000551661.5:ENST00000551132.5:ENST00000553078.5:ENST00000548021.5:ENST00000550641.6:ENST00000229195.8:ENST00000552915.5:ENST00000549443.5:ENST00000548741.5:ENST00000552483.5:ENST00000552422.5:ENST00000551179.1:ENST00000547321.5:ENST00000553020.5:ENST00000548159.5:ENST00000549750.5:ENST00000551043.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	37	2	2.63238	3.4167199999999998	4.20106	0.0695895	0.0259691	0.184298	0.133676
chr2	32561633	32561733	732910	0	+	0.2	[0,0.28]	chr2	84648	118	INTRON	INTRON	BIRC6	ENSG00000115760.15	ENST00000421745.7:ENST00000471232.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	37	2	2.63238	3.4167199999999998	4.20106	0.0695895	0.0259691	0.184298	0.133676
chr2	171134653	171134753	1263837	0	-	0.22	[0,0.28]	chr2	133921	164	INTRON	INTRON	TLK1	ENSG00000198586.14	ENST00000431350.7:ENST00000360843.7:ENST00000359766.7:ENST00000521943.5:ENST00000409443.6:ENST00000413010.5:ENST00000470340.1:ENST00000466220.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	37	2	2.63238	3.4167199999999998	4.20106	0.0695895	0.0259691	0.184298	0.133676
chr6	87229128	87229228	2914001	0	+	0.26	[0,0.28]	chr6	275311	53	INTRON	INTRON	ZNF292	ENSG00000188994.13	ENST00000369577.8:ENST00000518845.1:ENST00000339907.8:ENST00000496806.2	protein_coding	protein_coding	protein_coding	protein_coding	1	37	2	2.63238	3.4167199999999998	4.20106	0.0695895	0.0259691	0.184298	0.133676
chr2	95880126	95880226	1178565	0	-	0.35	(0.32,0.35]	chr2	125774	3	SS5_PROX	SS5_PROX:INTRON	ANKRD36C	ENSG00000174501.15	ENST00000295246.7:ENST00000456556.5:ENST00000531153.5:ENST00000534304.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	47	2	1.83416	3.41669	4.99922	0.0631198	0.00223907	0.176946	0.0435144
chr2	112655827	112655926	852165	0	+	0.474747	(0.44,0.476]	chr2	95585	25	INTRON	INTRON	SLC20A1	ENSG00000144136.11	ENST00000272542.8:ENST00000498224.5:ENST00000433924.5:ENST00000456264.5:ENST00000413135.1:ENST00000480984.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	166	2	3.32633	3.416605	3.50688	5.01735e-5	8.96833e-6	0.00612726	0.00215882
chr1	245880967	245881067	674433	0	-	0.58	(0.57,1]	chr1	79681	167	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000366517.5:ENST00000366516.5:ENST00000490107.6:ENST00000470510.5:ENST00000493441.5:ENST00000488153.5:ENST00000492487.5:ENST00000391836.3:ENST00000464398.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	20	2	2.66438	3.416595	4.16881	0.0171563	0.00574776	0.104099	0.0681402
chr16	15144352	15144452	6450899	0	-	0.58	(0.57,1]	chr16	621698	55	INTRON	INTRON	PKD1P6	ENSG00000250251.6	ENST00000343738.10	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	1	20	2	2.66438	3.416595	4.16881	0.0171563	0.00574776	0.104099	0.0681402
chr17	81247539	81247635	6847616	0	-	0.614583	(0.57,1]	chr17	677866	6	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	SLC38A10	ENSG00000157637.13	ENST00000374759.8:ENST00000539643.1:ENST00000540966.5:ENST00000576151.1:ENST00000542075.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	20	2	2.66438	3.416595	4.16881	0.0171563	0.00574776	0.104099	0.0681402
chr2	43956784	43956884	1110213	0	-	0.61	(0.57,1]	chr2	119070	58	INTRON	INTRON	LRPPRC	ENSG00000138095.20	ENST00000260665.12:ENST00000682308.1:ENST00000683459.1:ENST00000683623.1:ENST00000683125.1:ENST00000683994.1:ENST00000684619.1:ENST00000683833.1:ENST00000682546.1:ENST00000682585.1:ENST00000683220.1:ENST00000683796.1:ENST00000682607.1:ENST00000683590.1:ENST00000684306.1:ENST00000683213.1:ENST00000682779.1:ENST00000682885.1:ENST00000684743.1:ENST00000683346.1:ENST00000683072.1:ENST00000682303.1:ENST00000683329.1:ENST00000682933.1:ENST00000684383.1:ENST00000682480.1:ENST00000684290.1:ENST00000684341.1:ENST00000682595.1:ENST00000683645.1:ENST00000683802.1:ENST00000681961.1:ENST00000683694.1:ENST00000683989.1:ENST00000447246.2:ENST00000409659.6:ENST00000682104.1:ENST00000683934.1:ENST00000681959.1:ENST00000684482.1:ENST00000683082.1:ENST00000467058.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	20	2	2.66438	3.416595	4.16881	0.0171563	0.00574776	0.104099	0.0681402
chr22	46774834	46774934	7535306	0	+	0.58	(0.57,1]	chr22	770548	2	INTRON	INTRON	TBC1D22A	ENSG00000054611.14	ENST00000380995.5:ENST00000337137.9:ENST00000441936.5:ENST00000486163.5:ENST00000407381.7:ENST00000355704.7:ENST00000394449.6:ENST00000496139.5:ENST00000472791.5:ENST00000441162.5:ENST00000406733.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	20	2	2.66438	3.416595	4.16881	0.0171563	0.00574776	0.104099	0.0681402
chr3	47104316	47104414	1680998	0	-	0.479592	(0.476,0.515]	chr3	171587	5	INTRON	INTRON	SETD2	ENSG00000181555.22	ENST00000691544.1:ENST00000638947.2:ENST00000686876.1:ENST00000431180.5:ENST00000409792.4:ENST00000330022.11:ENST00000686773.1:ENST00000685005.1:ENST00000690461.1:ENST00000685505.1:ENST00000692883.1:ENST00000693321.1:ENST00000688290.1:ENST00000691902.1:ENST00000690157.1:ENST00000692362.1:ENST00000445387.5:ENST00000685399.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	39	2	2.06491	3.4165900000000002	4.76827	0.0304733	0.00600704	0.143385	0.0674604
chr5	180536767	180536867	2562289	0	+	0.42	(0.408,0.44]	chr5	245090	70	INTRON	INTRON	CNOT6	ENSG00000113300.13	ENST00000261951.9:ENST00000393356.7:ENST00000507016.1:ENST00000618123.4:ENST00000502447.1:ENST00000504343.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	39	2	2.07919	3.4165850000000004	4.75398	0.0291499	0.00703931	0.14147	0.0718189
chr5	180804619	180804718	2783257	0	-	0.434343	(0.408,0.44]	chr5	262792	8	INTRON	INTRON	MGAT1	ENSG00000131446.17	ENST00000333055.8:ENST00000393340.7:ENST00000446023.6:ENST00000506889.1:ENST00000514438.1:ENST00000502678.1:ENST00000513431.5:ENST00000504385.5:ENST00000514760.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	39	2	2.07919	3.4165850000000004	4.75398	0.0291499	0.00703931	0.14147	0.0718189
chr10	32021787	32021871	4590464	0	-	0.535714	(0.515,0.57]	chr10	423227	1	SS5_PROX	SS5_PROX:INTRON	KIF5B	ENSG00000170759.11	ENST00000302418.5	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	2.74772	3.41655	4.08538	0.0253843	0.0142192	0.12011	0.103638
chr17	67238434	67238533	6825762	0	-	0.525253	(0.515,0.57]	chr17	674543	193	INTRON	INTRON	HELZ	ENSG00000198265.12	ENST00000358691.10:ENST00000579953.5:ENST00000580168.5:ENST00000417253.7:ENST00000580662.5:ENST00000584641.5:ENST00000581159.5:ENST00000580963.1:ENST00000579861.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:non_stop_decay:nonsense_mediated_decay:processed_transcript	1	27	2	2.74772	3.41655	4.08538	0.0253843	0.0142192	0.12011	0.103638
chr2	36571696	36571796	1092539	0	-	0.54	(0.515,0.57]	chr2	117077	103	INTRON	INTRON	FEZ2	ENSG00000171055.15	ENST00000414288.5:ENST00000379245.8:ENST00000405912.8:ENST00000413938.5:ENST00000441005.5:ENST00000305852.11:ENST00000451623.5:ENST00000487282.5:ENST00000464964.1:ENST00000357996.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	27	2	2.74772	3.41655	4.08538	0.0253843	0.0142192	0.12011	0.103638
chr4	150992019	150992119	2271539	0	-	0.53	(0.515,0.57]	chr4	220921	626	INTRON	INTRON	LRBA	ENSG00000198589.14	ENST00000357115.9:ENST00000651943.2:ENST00000510413.5:ENST00000651035.1:ENST00000507224.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	27	2	2.74772	3.41655	4.08538	0.0253843	0.0142192	0.12011	0.103638
chr7	105534030	105534125	3375701	0	+	0.378947	(0.378,0.408]	chr7	316040	8	INTRON	INTRON	RINT1	ENSG00000135249.8	ENST00000467392.5:ENST00000482041.5:ENST00000493041.5:ENST00000257700.7:ENST00000497979.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	184	2	2.7396	3.416505	4.09341	2.44094e-4	1.49404e-6	0.0144024	7.32023e-4
chr11	34124119	34124201	4768387	0	+	0.439024	(0.408,0.44]	chr11	441108	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NAT10	ENSG00000135372.10	ENST00000531159.6:ENST00000257829.8:ENST00000527971.5	protein_coding	protein_coding	protein_coding	protein_coding	2	39	2	2.00768	3.4164900000000005	4.8253	0.035843	0.0056738	0.152216	0.0653997
chr6	4921411	4921511	2792315	0	+	0.33	(0.32,0.35]	chr6	263614	287	INTRON	INTRON	CDYL	ENSG00000153046.18	ENST00000328908.9:ENST00000440139.5:ENST00000397588.8:ENST00000472453.5:ENST00000449732.6:ENST00000343762.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	43	2	1.81328	3.416225	5.01917	0.0615716	0.0055659	0.193423	0.0648867
chr5	131283632	131283731	2484832	0	+	0.50505	(0.476,0.515]	chr5	237114	191	INTRON	INTRON	CDC42SE2	ENSG00000158985.14	ENST00000502840.5:ENST00000511432.5:ENST00000506419.5:ENST00000395246.5:ENST00000505065.2:ENST00000504701.5:ENST00000503291.5:ENST00000360515.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	47	2	1.68092	3.416175	5.15143	0.0474026	0.00166579	0.169265	0.0369207
chr2	144494941	144495038	1241554	0	-	0.319588	(0.28,0.32]	chr2	131733	8	EXON_MRNA	EXON_MRNA:INTRON	ZEB2:ENSG00000279166	ENSG00000169554.23:ENSG00000279166.1	ENST00000636471.1:ENST00000627532.3:ENST00000638128.1:ENST00000637304.1:ENST00000636179.1:ENST00000419938.5:ENST00000409487.7:ENST00000636732.2:ENST00000636026.2:ENST00000675069.1:ENST00000689298.1:ENST00000539609.7:ENST00000558170.6:ENST00000303660.8:ENST00000427902.5:ENST00000637267.2:ENST00000392861.6:ENST00000431672.4:ENST00000409211.5:ENST00000465308.5:ENST00000434448.5:ENST00000472146.5:ENST00000461784.3:ENST00000476394.5:ENST00000637591.2:ENST00000479735.1:ENST00000453352.5:ENST00000435831.5:ENST00000444559.5:ENST00000630572.2:ENST00000484313.3:ENST00000623674.1	protein_coding	protein_coding	protein_coding:TEC	protein_coding:retained_intron:nonsense_mediated_decay:TEC:processed_transcript	2	81	2	3.40041	3.4161349999999997	3.43186	0.00273088	0.00160646	0.0467642	0.0367961
chr22	24012726	24012825	7485174	0	+	0.434343	(0.408,0.44]	chr22	763741	6	INTRON	INTRON	CABIN1	ENSG00000099991.18	ENST00000454754.5:ENST00000263119.10:ENST00000617531.4:ENST00000405822.6:ENST00000445422.5:ENST00000398319.6	protein_coding	protein_coding	protein_coding	protein_coding	2	41	2	2.49983	3.416105	4.33238	0.0218901	0.00713527	0.11491	0.0756118
chr12	67290028	67290127	5160707	0	+	0.313131	(0.28,0.32]	chr12	488472	76	INTRON	INTRON	CAND1	ENSG00000111530.13	ENST00000545606.6:ENST00000539434.1:ENST00000540525.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	45	2	1.96475	3.41603	4.86731	0.0428385	0.0116253	0.162255	0.0889104
chr5	146474738	146474836	2515785	0	+	0.285714	(0.28,0.32]	chr5	240338	28	INTRON	INTRON	TCERG1	ENSG00000113649.13	ENST00000507175.5:ENST00000296702.9:ENST00000679501.2:ENST00000394421.7:ENST00000549332.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	45	2	1.96475	3.41603	4.86731	0.0428385	0.0116253	0.162255	0.0889104
chr3	49720278	49720376	1694205	0	-	0.469388	(0.44,0.476]	chr3	173759	36	UTR3	UTR3:EXON_MRNA	GMPPB	ENSG00000173540.14	ENST00000480687.5:ENST00000308388.7:ENST00000308375.10:ENST00000677393.1:ENST00000678853.1:ENST00000678208.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	88	2	2.82351	3.4159800000000002	4.00845	0.00191049	1.1799e-4	0.0403772	0.00984015
chr9	129052118	129052217	4208671	0	+	0.515152	(0.476,0.515]	chr9	385504	3	INTRON	INTRON	MIGA2	ENSG00000148343.19	ENST00000684074.1:ENST00000439290.5:ENST00000445183.5:ENST00000358369.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	43	2	2.21677	3.4159800000000002	4.61519	0.0207026	0.00528365	0.110999	0.0656295
chr1	35086630	35086729	67979	0	+	0.30303	(0.28,0.32]	chr1	8657	68	INTRON	INTRON	ZMYM1	ENSG00000197056.11	ENST00000650449.1:ENST00000611874.4:ENST00000417119.5:ENST00000466390.5:ENST00000359858.9:ENST00000488455.5:ENST00000373330.1:ENST00000373329.5:ENST00000475654.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	45	2	1.90263	3.41596	4.92929	0.0503272	0.0098607	0.17488	0.0838128
chr1	84658108	84658206	496442	0	-	0.306122	(0.28,0.32]	chr1	58849	4	SS5_PROX	SS5_PROX:INTRON	SSX2IP	ENSG00000117155.17	ENST00000342203.8:ENST00000437941.6:ENST00000481102.5:ENST00000476905.6:ENST00000605755.5:ENST00000603677.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	45	2	1.90263	3.41596	4.92929	0.0503272	0.0098607	0.17488	0.0838128
chr2	65265675	65265774	799446	0	+	0.30303	(0.28,0.32]	chr2	89381	1	INTRON	INTRON	ACTR2	ENSG00000138071.15	ENST00000260641.10:ENST00000377982.8	protein_coding	protein_coding	protein_coding	protein_coding	2	45	2	1.90263	3.41596	4.92929	0.0503272	0.0098607	0.17488	0.0838128
chr22	50208625	50208716	7544091	0	+	0.571429	(0.57,1]	chr22	770983	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SELENOO	ENSG00000073169.15	ENST00000380903.7:ENST00000492092.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	28	2	2.66305	3.41593	4.16881	0.00574776	0.00327879	0.0681402	0.0509077
chrX	41132732	41132831	7644537	0	+	0.313131	(0.28,0.32]	chrX	782249	8	INTRON	INTRON	USP9X	ENSG00000124486.14	ENST00000324545.9:ENST00000378308.7	protein_coding	protein_coding	protein_coding	protein_coding	3	55	2	1.90249	3.41589	4.92929	0.0261803	0.0098607	0.133676	0.0838128
chr16	4342906	4343006	6436585	0	-	0.46	(0.44,0.476]	chr16	619671	3	SS5_PROX	SS5_PROX:INTRON	PAM16	ENSG00000217930.8	ENST00000577031.5:ENST00000573236.5:ENST00000576217.1:ENST00000318059.8:ENST00000571986.5:ENST00000573614.5:ENST00000575636.5:ENST00000571941.5:ENST00000575848.5:ENST00000573553.5:ENST00000573450.5:ENST00000571178.1:ENST00000571819.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	32	2	2.60774	3.4158350000000004	4.22393	0.0255874	0.0162322	0.120269	0.109464
chr3	9422989	9423078	1359141	0	+	0.460674	(0.44,0.476]	chr3	142668	4	UTR5	UTR5:EXON_MRNA:INTRON	SETD5	ENSG00000168137.20	ENST00000402198.7:ENST00000431285.5:ENST00000683012.1:ENST00000463180.5:ENST00000478475.5:ENST00000415650.5:ENST00000682536.1:ENST00000663774.1:ENST00000665872.1:ENST00000666307.1:ENST00000693430.1:ENST00000691925.1:ENST00000684606.1:ENST00000691175.1:ENST00000688835.1:ENST00000683262.1:ENST00000443339.5:ENST00000406341.5:ENST00000670063.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	32	2	2.60774	3.4158350000000004	4.22393	0.0255874	0.0162322	0.120269	0.109464
chr7	44452982	44453082	3527912	0	-	0.47	(0.44,0.476]	chr7	328977	249	INTRON	INTRON	NUDCD3	ENSG00000015676.18	ENST00000355451.8:ENST00000460110.5:ENST00000472246.5:ENST00000464812.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	32	2	2.60774	3.4158350000000004	4.22393	0.0255874	0.0162322	0.120269	0.109464
chr19	40281421	40281519	7183714	0	-	0.520408	(0.515,0.57]	chr19	726536	7	INTRON	INTRON	AKT2	ENSG00000105221.18	ENST00000392038.7:ENST00000424901.5:ENST00000391844.8:ENST00000584288.5:ENST00000579047.5:ENST00000596634.5:ENST00000452077.5:ENST00000578123.5:ENST00000423127.5:ENST00000358335.9:ENST00000456441.5:ENST00000583859.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	187	2	3.32035	3.41582	3.51129	5.71425e-6	2.51213e-6	0.00166334	0.0011145
chr7	77577448	77577547	3342418	0	+	0.40404	(0.378,0.408]	chr7	311325	59	INTRON	INTRON	PTPN12	ENSG00000127947.16	ENST00000248594.11:ENST00000460731.5:ENST00000523952.5:ENST00000433369.6:ENST00000415482.6:ENST00000435495.6:ENST00000418110.5:ENST00000522115.6:ENST00000440186.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	42	2	2.51464	3.415815	4.31699	0.0250408	0.00684341	0.12011	0.0748032
chr13	108217273	108217373	5649039	0	-	0.52	(0.515,0.57]	chr13	538185	19	UTR5	UTR5:EXON_MRNA:INTRON	LIG4	ENSG00000174405.15	ENST00000405925.2:ENST00000688455.1:ENST00000692222.1:ENST00000688396.1:ENST00000688595.1:ENST00000686204.1	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	2.23241	3.415775	4.59914	0.0581268	0.00616166	0.188651	0.0676501
chr19	19471909	19472009	7036014	0	+	0.55	(0.515,0.57]	chr19	701466	59	INTRON	INTRON	GATAD2A	ENSG00000167491.18	ENST00000360315.7:ENST00000609040.5:ENST00000417582.6:ENST00000683918.1:ENST00000432704.5:ENST00000404158.5:ENST00000429242.7:ENST00000358713.7:ENST00000444839.1:ENST00000418032.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	27	2	2.23241	3.415775	4.59914	0.0581268	0.00616166	0.188651	0.0676501
chr7	102043042	102043142	3368625	0	+	0.52	(0.515,0.57]	chr7	315239	145	INTRON	INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000497815.5:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000558469.5:ENST00000560541.5:ENST00000558836.5:ENST00000606749.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	27	2	2.23241	3.415775	4.59914	0.0581268	0.00616166	0.188651	0.0676501
chr1	88766061	88766161	156589	0	+	0.47	(0.44,0.476]	chr1	17057	53	INTRON	INTRON	PKN2	ENSG00000065243.20	ENST00000316005.11:ENST00000370521.8:ENST00000370513.9	protein_coding	protein_coding	protein_coding	protein_coding	2	39	2	2.14573	3.415685	4.68564	0.0238593	0.00816201	0.129075	0.0766625
chr11	76865737	76865836	4836819	0	+	0.444444	(0.44,0.476]	chr11	451187	43	INTRON	INTRON	ACER3	ENSG00000078124.13	ENST00000679754.1:ENST00000534206.5:ENST00000679866.1:ENST00000680842.1:ENST00000681257.1:ENST00000681354.1:ENST00000681732.1:ENST00000680583.1:ENST00000532485.6:ENST00000681375.1:ENST00000681004.1:ENST00000525194.5:ENST00000525861.5:ENST00000530182.6:ENST00000531461.5:ENST00000681955.1:ENST00000681411.1:ENST00000679611.1:ENST00000679924.1:ENST00000526597.5:ENST00000681251.1:ENST00000530334.6:ENST00000533873.1:ENST00000531352.5:ENST00000278544.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	39	2	2.14573	3.415685	4.68564	0.0238593	0.00816201	0.129075	0.0766625
chr1	236808303	236808403	342626	0	+	0.44	(0.408,0.44]	chr1	39823	2	SS3_PROX	SS3_PROX:INTRON	MTR	ENSG00000116984.15	ENST00000680454.1:ENST00000366577.10:ENST00000674797.2:ENST00000652435.1:ENST00000679569.1:ENST00000650888.1:ENST00000463959.1:ENST00000535889.6:ENST00000651455.1:ENST00000681102.1:ENST00000679842.1:ENST00000681177.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	54	2	1.43792	3.41556	5.3932	0.062843	7.81492e-4	0.196433	0.0257168
chr11	663880	663979	4889162	0	-	0.484848	(0.476,0.515]	chr11	457709	37	INTRON	INTRON	DEAF1	ENSG00000177030.19	ENST00000382409.4:ENST00000527170.5:ENST00000685854.1:ENST00000683307.1:ENST00000528864.6:ENST00000525626.6:ENST00000682936.1:ENST00000690068.1:ENST00000692634.1:ENST00000687329.1:ENST00000686001.1:ENST00000689835.1:ENST00000525904.5:ENST00000530813.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	54	2	1.73688	3.415555	5.09423	0.0252731	0.00204588	0.133676	0.04086
chr17	60607233	60607332	6644537	0	+	0.353535	(0.35,0.378]	chr17	648916	21	INTRON	INTRON	PPM1D	ENSG00000170836.13	ENST00000305921.8:ENST00000693102.1:ENST00000685212.1:ENST00000693196.1:ENST00000392995.7:ENST00000685582.1:ENST00000688505.1:ENST00000629650.3:ENST00000687355.1:ENST00000686064.1:ENST00000689445.1:ENST00000590418.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	33	2	2.1617	3.415495	4.66929	0.0771502	0.00541617	0.196285	0.066545000000000007
chr3	60207031	60207131	1711684	0	-	0.37	(0.35,0.378]	chr3	176138	1263	INTRON	INTRON	FHIT	ENSG00000189283.10	ENST00000492590.6:ENST00000476844.5:ENST00000468189.5:ENST00000488467.5	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	2.1617	3.415495	4.66929	0.0771502	0.00541617	0.196285	0.066545000000000007
chr7	140024198	140024288	3658842	0	-	0.366667	(0.35,0.378]	chr7	339550	6	UTR3	UTR3:EXON_MRNA	PARP12	ENSG00000059378.13	ENST00000263549.8:ENST00000473341.5:ENST00000488726.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	33	2	2.1617	3.415495	4.66929	0.0771502	0.00541617	0.196285	0.066545000000000007
chr3	122460563	122460657	1801069	0	-	0.446809	(0.44,0.476]	chr3	181004	13	EXON_LNCRNA	EXON_LNCRNA:INTRON	KPNA1	ENSG00000114030.13	ENST00000344337.11:ENST00000466923.5:ENST00000485027.5:ENST00000494339.5:ENST00000465882.5:ENST00000464940.1:ENST00000482287.5:ENST00000476916.5:ENST00000493510.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	104	2	2.61896	3.4154299999999997	4.2119	0.0017827	2.22282e-5	0.0379201	0.00367645
chr6	75639288	75639387	2905326	0	+	0.20202	[0,0.28]	chr6	274513	41	INTRON	INTRON	SENP6	ENSG00000112701.18	ENST00000370010.6:ENST00000447266.7:ENST00000327284.12:ENST00000483859.6:ENST00000424947.6	protein_coding	protein_coding	protein_coding	protein_coding	2	49	2	2.00649	3.4154099999999996	4.82433	0.040391	0.0200334	0.161534	0.109608
chr2	15416757	15416846	1071699	0	-	0.370787	(0.35,0.378]	chr2	114350	7	INTRON	INTRON	NBAS	ENSG00000151779.13	ENST00000281513.10:ENST00000442506.5:ENST00000441755.5:ENST00000429842.1	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	2.24535	3.41536	4.58537	0.0647516	0.00703328	0.179192	0.0754576
chr5	36898382	36898482	2338646	0	+	0.37	(0.35,0.378]	chr5	225949	120	INTRON	INTRON	NIPBL	ENSG00000164190.19	ENST00000282516.13:ENST00000448238.2:ENST00000652901.1	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	2.24535	3.41536	4.58537	0.0647516	0.00703328	0.179192	0.0754576
chr5	138768174	138768273	2497451	0	+	0.363636	(0.35,0.378]	chr5	238702	62	INTRON	INTRON	CTNNA1	ENSG00000044115.21	ENST00000517980.5:ENST00000522227.5:ENST00000524127.5:ENST00000523912.5:ENST00000627109.2:ENST00000520339.5:ENST00000521724.5:ENST00000302763.12:ENST00000518910.5:ENST00000519309.5:ENST00000519113.5:ENST00000520158.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	33	2	2.24535	3.41536	4.58537	0.0647516	0.00703328	0.179192	0.0754576
chrX	24066392	24066492	7630856	0	+	0.37	(0.35,0.378]	chrX	781474	3	SS5_PROX	SS5_PROX:INTRON	EIF2S3	ENSG00000130741.11	ENST00000253039.9	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	2.24535	3.41536	4.58537	0.0647516	0.00703328	0.179192	0.0754576
chr15	85002934	85003034	6089141	0	+	0.26	[0,0.28]	chr15	579504	202	INTRON	INTRON	PDE8A	ENSG00000073417.15	ENST00000310298.8:ENST00000557957.5:ENST00000394553.6:ENST00000339708.9:ENST00000478717.5:ENST00000485596.5:ENST00000559742.5:ENST00000559086.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	59	2	1.66929	3.415295	5.1613	0.0537506	0.00866441	0.180803	0.0787025
chr1	182868741	182868840	273288	0	+	0.353535	(0.35,0.378]	chr1	31933	13	INTRON	INTRON	DHX9	ENSG00000135829.17	ENST00000367549.4	protein_coding	protein_coding	protein_coding	protein_coding	5	128	2	2.7406	3.4152899999999997	4.08998	3.25081e-4	1.0444e-4	0.0160177	0.00919241
chr1	10512644	10512744	23354	0	+	0.34	(0.32,0.35]	chr1	2503	170	INTRON	INTRON	PEX14	ENSG00000142655.13	ENST00000472851.1:ENST00000356607.9:ENST00000491661.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	76	2	3.28107	3.415165	3.54926	0.00262488	0.00133843	0.0470772	0.0335491
chr9	37777127	37777224	4251980	0	-	0.402062	(0.378,0.408]	chr9	391600	11	EXON_LNCRNA	EXON_LNCRNA:INTRON	EXOSC3:ENSG00000289295	ENSG00000107371.14:ENSG00000289295.1	ENST00000678095.1:ENST00000679059.1:ENST00000465229.5:ENST00000686288.1	protein_coding	nonsense_mediated_decay	protein_coding:lncRNA	nonsense_mediated_decay:lncRNA	3	89	2	3.18608	3.4151350000000003	3.64419	7.25777e-4	3.50013e-4	0.0247646	0.0166791
chr1	67687160	67687260	142288	0	+	0.38	(0.378,0.408]	chr1	15926	1	SS3_PROX	SS3_PROX:INTRON	GADD45A	ENSG00000116717.13	ENST00000370986.9:ENST00000370985.4:ENST00000650283.1:ENST00000648742.1:ENST00000617962.2	protein_coding	protein_coding	protein_coding	protein_coding	4	107	2	2.81806	3.41513	4.0122	5.36236e-4	1.33645e-4	0.0209287	0.0105393
chr1	75653278	75653378	490210	0	-	0.47	(0.44,0.476]	chr1	58159	104	INTRON	INTRON	ENSG00000230863	ENSG00000230863.3	ENST00000648424.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	1	29	2	2.49112	3.4150549999999997	4.33899	0.0315968	0.0206616	0.144381	0.110999
chr10	101360504	101360604	4509881	0	+	0.47	(0.44,0.476]	chr10	415398	55	INTRON	INTRON	BTRC	ENSG00000166167.18	ENST00000393441.8:ENST00000475200.5:ENST00000408038.6:ENST00000370187.8:ENST00000465182.1:ENST00000370183.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	29	2	2.49112	3.4150549999999997	4.33899	0.0315968	0.0206616	0.144381	0.110999
chr11	28131351	28131451	4752388	0	+	0.45	(0.44,0.476]	chr11	440090	56	INTRON	INTRON	METTL15	ENSG00000169519.21	ENST00000406787.7:ENST00000451385.6:ENST00000407364.8:ENST00000532947.2:ENST00000634627.1:ENST00000634973.1:ENST00000303459.10:ENST00000634721.1:ENST00000634762.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	29	2	2.49112	3.4150549999999997	4.33899	0.0315968	0.0206616	0.144381	0.110999
chr2	188311187	188311287	949753	0	+	0.47	(0.44,0.476]	chr2	103532	164	INTRON	INTRON	GULP1	ENSG00000144366.16	ENST00000409843.5:ENST00000409830.6:ENST00000410051.5:ENST00000479019.5:ENST00000409927.5:ENST00000409805.5:ENST00000359135.7:ENST00000409580.5:ENST00000409637.7:ENST00000409609.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	29	2	2.49112	3.4150549999999997	4.33899	0.0315968	0.0206616	0.144381	0.110999
chr2	235589522	235589622	1042292	0	+	0.47	(0.44,0.476]	chr2	111222	646	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1:ENST00000402604.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	29	2	2.49112	3.4150549999999997	4.33899	0.0315968	0.0206616	0.144381	0.110999
chrX	130093232	130093332	7887419	0	-	0.46	(0.44,0.476]	chrX	803067	113	INTRON	INTRON	ELF4	ENSG00000102034.18	ENST00000308167.10:ENST00000335997.11:ENST00000434609.1	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	2.49112	3.4150549999999997	4.33899	0.0315968	0.0206616	0.144381	0.110999
chr18	46904706	46904798	6966612	0	-	0.51087	(0.476,0.515]	chr18	689537	1	INTRON	INTRON	PIAS2	ENSG00000078043.16	ENST00000585916.6:ENST00000398654.7:ENST00000324794.11:ENST00000545673.5:ENST00000592212.5:ENST00000590127.5:ENST00000592011.5:ENST00000589917.1:ENST00000586953.1:ENST00000587810.1:ENST00000592221.5:ENST00000586170.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	42	2	2.05154	3.41505	4.77856	0.0336015	0.00305743	0.134145	0.0509893
chr8	123354600	123354699	4042204	0	-	0.50505	(0.476,0.515]	chr8	368721	48	INTRON	INTRON	ATAD2	ENSG00000156802.13	ENST00000287394.10:ENST00000517666.5:ENST00000521903.5:ENST00000519124.5:ENST00000521496.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	42	2	2.05154	3.41505	4.77856	0.0336015	0.00305743	0.134145	0.0509893
chr1	168244137	168244236	250346	0	+	0.444444	(0.44,0.476]	chr1	29769	17	UTR3	UTR3:EXON_MRNA	SFT2D2	ENSG00000213064.10	ENST00000271375.7	protein_coding	protein_coding	protein_coding	protein_coding	8	211	2	2.99993	3.414955	3.82998	4.87533e-5	9.61734e-7	0.00606006	5.54959e-4
chr14	77578076	77578170	5927758	0	-	0.446809	(0.44,0.476]	chr14	563721	8	INTRON	INTRON	SPTLC2	ENSG00000100596.8	ENST00000216484.7:ENST00000692906.1:ENST00000554901.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	29	2	2.39604	3.414905	4.43377	0.0404291	0.0162803	0.161534	0.101453
chr16	15139853	15139953	6450854	0	-	0.47	(0.44,0.476]	chr16	621698	10	INTRON	INTRON	PKD1P6	ENSG00000250251.6	ENST00000343738.10	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	1	29	2	2.39604	3.414905	4.43377	0.0404291	0.0162803	0.161534	0.101453
chr2	61286428	61286525	1128669	0	-	0.474227	(0.44,0.476]	chr2	121318	11	INTRON	INTRON	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000472706.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	29	2	2.39604	3.414905	4.43377	0.0404291	0.0162803	0.161534	0.101453
chr4	184770776	184770876	2305071	0	-	0.45	(0.44,0.476]	chr4	223041	3	SS3_PROX	SS3_PROX:INTRON	ACSL1	ENSG00000151726.15	ENST00000454703.6:ENST00000281455.7:ENST00000515030.5:ENST00000507295.5:ENST00000506733.5:ENST00000504342.5:ENST00000513317.5:ENST00000504900.5:ENST00000505492.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	29	2	2.39604	3.414905	4.43377	0.0404291	0.0162803	0.161534	0.101453
chr5	146178556	146178653	2747374	0	-	0.453608	(0.44,0.476]	chr5	258899	5	INTRON	INTRON	LARS1	ENSG00000133706.19	ENST00000674174.1:ENST00000674170.1:ENST00000674479.1:ENST00000674309.1:ENST00000674218.1:ENST00000674467.1:ENST00000674290.1:ENST00000674447.1:ENST00000674270.1:ENST00000674383.1:ENST00000674191.1:ENST00000674158.1:ENST00000394434.7:ENST00000674398.1:ENST00000674277.1:ENST00000274562.13:ENST00000510191.5:ENST00000674310.1:ENST00000512412.2:ENST00000674417.1:ENST00000674450.1:ENST00000674412.1:ENST00000618084.2:ENST00000511505.5:ENST00000505223.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	29	2	2.39604	3.414905	4.43377	0.0404291	0.0162803	0.161534	0.101453
chr6	18133034	18133124	3068605	0	-	0.444444	(0.44,0.476]	chr6	285125	5	INTRON	INTRON	TPMT	ENSG00000137364.5	ENST00000309983.5	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	2.39604	3.414905	4.43377	0.0404291	0.0162803	0.161534	0.101453
chr8	123101586	123101666	3850528	0	+	0.4625	(0.44,0.476]	chr8	354696	2	INTRON	INTRON	TBC1D31	ENSG00000156787.17	ENST00000519418.5:ENST00000287380.6:ENST00000522420.5:ENST00000327098.9:ENST00000521676.5:ENST00000524307.5:ENST00000521914.1:ENST00000518805.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	29	2	2.39604	3.414905	4.43377	0.0404291	0.0162803	0.161534	0.101453
chr9	128521023	128521121	4205553	0	+	0.459184	(0.44,0.476]	chr9	384579	10	UTR3	UTR3:EXON_MRNA:INTRON	GLE1	ENSG00000119392.16	ENST00000683748.1:ENST00000684314.1:ENST00000683044.1:ENST00000683905.1:ENST00000684646.1:ENST00000684331.1:ENST00000494417.2:ENST00000309971.9:ENST00000684139.1:ENST00000372770.4:ENST00000683288.1:ENST00000682831.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	29	2	2.39604	3.414905	4.43377	0.0404291	0.0162803	0.161534	0.101453
chr7	6032128	6032228	3475964	0	-	0.34	(0.32,0.35]	chr7	325180	27	INTRON	INTRON	EIF2AK1	ENSG00000086232.13	ENST00000199389.11	protein_coding	protein_coding	protein_coding	protein_coding	3	53	2	2.06478	3.414895	4.76501	0.0147778	0.0114287	0.106702	0.0886611
chr2	47377377	47377477	773411	0	+	0.5	(0.476,0.515]	chr2	87197	3	SS5_PROX	SS5_PROX:PRIMIRNA:INTRON	EPCAM:MIR559	ENSG00000119888.11:ENSG00000207923.1	ENST00000405271.5:ENST00000456133.5:ENST00000263735.9:ENST00000490733.1:ENST00000385188.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:primary_miRNA	2	64	2	3.29074	3.4148449999999997	3.53895	0.00272563	0.00075485700000000005	0.0467523	0.0251966
chr1	52494257	52494353	457970	0	-	0.302083	(0.28,0.32]	chr1	55058	2	INTRON	INTRON	TUT4	ENSG00000134744.14	ENST00000371544.7:ENST00000257177.9:ENST00000528642.5:ENST00000484723.6:ENST00000371541.5:ENST00000473856.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	46	2	2.24061	3.41468	4.58875	0.0230574	0.0194267	0.119831	0.118056
chr12	10996157	10996255	5267744	0	-	0.469388	(0.44,0.476]	chr12	502212	3	UTR3	UTR3:EXON_MRNA:INTRON	ENSG00000275778:PRH1:TAS2R20	ENSG00000275778.2:ENSG00000231887.8:ENSG00000255837.2	ENST00000536668.2:ENST00000535024.6:ENST00000539853.5:ENST00000541977.5:ENST00000536086.2:ENST00000534923.1:ENST00000538986.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	30	2	2.81896	3.41467	4.01038	0.0433743	0.0120766	0.148082	0.0962311
chr12	28408762	28408862	5102474	0	+	0.47	(0.44,0.476]	chr12	481982	170	INTRON	INTRON	CCDC91	ENSG00000123106.11	ENST00000540794.5:ENST00000536154.5:ENST00000535520.5:ENST00000539107.5:ENST00000545336.5:ENST00000536442.6:ENST00000543809.5:ENST00000545737.5:ENST00000381259.5:ENST00000540401.5:ENST00000539904.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	30	2	2.81896	3.41467	4.01038	0.0433743	0.0120766	0.148082	0.0962311
chr12	120776095	120776195	5434613	0	-	0.45	(0.44,0.476]	chr12	519626	61	INTRON	INTRON	SPPL3	ENSG00000157837.16	ENST00000353487.7:ENST00000536996.5:ENST00000543608.5:ENST00000543854.5	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	2.81896	3.41467	4.01038	0.0433743	0.0120766	0.148082	0.0962311
chr17	27561943	27562042	6581826	0	+	0.464646	(0.44,0.476]	chr17	639682	11	INTRON	INTRON	KSR1	ENSG00000141068.15	ENST00000644974.2:ENST00000583370.5:ENST00000398988.7:ENST00000268763.10:ENST00000509603.6:ENST00000582311.1:ENST00000398985.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	30	2	2.81896	3.41467	4.01038	0.0433743	0.0120766	0.148082	0.0962311
chr6	35263730	35263830	2851376	0	+	0.47	(0.44,0.476]	chr6	269366	35	INTRON	INTRON	ZNF76	ENSG00000065029.15	ENST00000491400.5:ENST00000229405.8:ENST00000469195.5:ENST00000486891.5:ENST00000484932.5:ENST00000460229.1:ENST00000373953.8:ENST00000339411.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	30	2	2.81896	3.41467	4.01038	0.0433743	0.0120766	0.148082	0.0962311
chr8	30688399	30688486	3932340	0	-	0.471264	(0.44,0.476]	chr8	360207	4	INTRON	INTRON	GSR	ENSG00000104687.14	ENST00000221130.11:ENST00000643653.1:ENST00000643525.1:ENST00000537535.5:ENST00000541648.5:ENST00000546342.5:ENST00000523295.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	30	2	2.81896	3.41467	4.01038	0.0433743	0.0120766	0.148082	0.0962311
chr7	101844558	101844658	3366634	0	+	0.36	(0.35,0.378]	chr7	315215	252	INTRON	INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000497815.5:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000607092.1:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000558469.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	130	2	2.4337	3.41459	4.39548	0.00216531	9.17511e-6	0.0417866	0.00217645
chr22	30903646	30903745	7501203	0	+	0.616162	(0.57,1]	chr22	765276	93	INTRON	INTRON	OSBP2	ENSG00000184792.16	ENST00000438716.3:ENST00000407373.5:ENST00000403222.7:ENST00000332585.11:ENST00000446658.6:ENST00000401475.5:ENST00000437268.6:ENST00000535268.5:ENST00000431368.5:ENST00000452656.5	protein_coding	protein_coding	protein_coding	protein_coding	4	56	2	2.7621000000000002	3.41455	4.067	5.29607e-4	2.30559e-5	0.0207276	0.00391568
chr12	119860290	119860389	5432103	0	-	0.464646	(0.44,0.476]	chr12	519010	22	INTRON	INTRON	CIT	ENSG00000122966.17	ENST00000392521.7:ENST00000261833.11:ENST00000612548.4	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	2.20949	3.4145149999999997	4.61954	0.0672585	0.00506805	0.183051	0.0646039
chr14	60755152	60755252	5736925	0	+	0.45	(0.44,0.476]	chr14	544884	13	INTRON	INTRON	MNAT1	ENSG00000020426.11	ENST00000261245.9:ENST00000556764.5:ENST00000539616.6:ENST00000553354.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	31	2	2.20949	3.4145149999999997	4.61954	0.0672585	0.00506805	0.183051	0.0646039
chr19	32670987	32671087	7169584	0	-	0.46	(0.44,0.476]	chr19	724478	116	INTRON	INTRON	ANKRD27	ENSG00000105186.16	ENST00000306065.9:ENST00000587352.5:ENST00000586463.5:ENST00000588700.5:ENST00000586693.7:ENST00000590519.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	31	2	2.20949	3.4145149999999997	4.61954	0.0672585	0.00506805	0.183051	0.0646039
chr19	52556550	52556647	7095553	0	+	0.474227	(0.44,0.476]	chr19	711373	1	INTRON	INTRON	ZNF808:ZNF701	ENSG00000198482.14:ENSG00000167562.14	ENST00000487863.5:ENST00000478039.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	1	31	2	2.20949	3.4145149999999997	4.61954	0.0672585	0.00506805	0.183051	0.0646039
chr4	40107324	40107424	1954373	0	+	0.45	(0.44,0.476]	chr4	195714	3	SS5_PROX	SS5_PROX:INTRON	N4BP2	ENSG00000078177.14	ENST00000261435.11:ENST00000511480.5:ENST00000513269.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	31	2	2.20949	3.4145149999999997	4.61954	0.0672585	0.00506805	0.183051	0.0646039
chr4	110185856	110185956	2227607	0	-	0.46	(0.44,0.476]	chr4	218024	799	INTRON	INTRON	ELOVL6	ENSG00000170522.10	ENST00000394607.7:ENST00000302274.8:ENST00000514184.5:ENST00000506625.5:ENST00000506461.1:ENST00000503885.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	31	2	2.20949	3.4145149999999997	4.61954	0.0672585	0.00506805	0.183051	0.0646039
chr5	62492703	62492802	2363822	0	+	0.474747	(0.44,0.476]	chr5	227939	21	INTRON	INTRON	IPO11	ENSG00000086200.17	ENST00000424533.5:ENST00000325324.11:ENST00000409296.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	31	2	2.20949	3.4145149999999997	4.61954	0.0672585	0.00506805	0.183051	0.0646039
chr9	15477877	15477976	4235743	0	-	0.474747	(0.44,0.476]	chr9	389288	33	INTRON	INTRON	PSIP1	ENSG00000164985.15	ENST00000380738.8:ENST00000380733.9:ENST00000380716.8:ENST00000380715.5:ENST00000397519.6	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	2.20949	3.4145149999999997	4.61954	0.0672585	0.00506805	0.183051	0.0646039
chr15	69414876	69414976	6058736	0	+	0.57	(0.515,0.57]	chr15	576709	4	SS5_PROX	SS5_PROX:INTRON	KIF23	ENSG00000137807.16	ENST00000260363.9:ENST00000643966.1:ENST00000395392.6:ENST00000352331.8:ENST00000561089.5:ENST00000647715.1:ENST00000679126.1:ENST00000558346.5:ENST00000559279.6:ENST00000560042.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	45	2	2.31902	3.41451	4.51	0.00809449	0.00493032	0.0766625	0.0646039
chr6	147334722	147334820	2990030	0	+	0.214286	[0,0.28]	chr6	280108	1	INTRON	INTRON	STXBP5	ENSG00000164506.15	ENST00000321680.11:ENST00000367481.7:ENST00000367480.7:ENST00000367475.6:ENST00000392291.2	protein_coding	protein_coding	protein_coding	protein_coding	3	123	2	3.22875	3.4144699999999997	3.60019	0.00172089	5.02502e-4	0.0374701	0.020217099999999998
chr1	202779293	202779393	620459	0	-	0.54	(0.515,0.57]	chr1	73670	18	INTRON	INTRON	KDM5B	ENSG00000117139.18	ENST00000367265.9:ENST00000648338.1:ENST00000649542.1:ENST00000647757.1:ENST00000367264.7:ENST00000648473.1:ENST00000650569.1:ENST00000648056.1:ENST00000649770.1:ENST00000648469.1:ENST00000650417.1:ENST00000235790.9:ENST00000648738.1:ENST00000648958.1:ENST00000602511.1:ENST00000650368.1:ENST00000649200.1:ENST00000648354.1:ENST00000650493.1:ENST00000470573.5:ENST00000467487.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	37	2	2.51561	3.414435	4.31326	0.0141817	0.00635044	0.0959618	0.0723103
chr14	55190469	55190568	5900501	0	-	0.383838	(0.378,0.408]	chr14	560487	9	INTRON	INTRON	DLGAP5	ENSG00000126787.13	ENST00000395425.6:ENST00000247191.7:ENST00000557645.5:ENST00000554067.1	protein_coding	protein_coding	protein_coding	protein_coding	3	89	2	3.1215	3.414395	3.70729	5.5156e-4	4.84777e-4	0.0216014	0.0199443
chr1	203844123	203844221	297182	0	+	0.459184	(0.44,0.476]	chr1	34198	34	INTRON	INTRON	ZC3H11A:ZBED6	ENSG00000058673.17:ENSG00000257315.3	ENST00000367210.3:ENST00000453771.5:ENST00000638800.1:ENST00000367214.5:ENST00000639812.1:ENST00000367212.7:ENST00000332127.8:ENST00000550078.2:ENST00000495527.5:ENST00000640465.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	31	2	2.29842	3.41438	4.53034	0.0552483	0.00672609	0.165463	0.0738715
chr10	102261915	102262015	4512807	0	+	0.47	(0.44,0.476]	chr10	415698	14	INTRON	INTRON	GBF1	ENSG00000107862.7	ENST00000676513.1:ENST00000676939.1:ENST00000677439.1:ENST00000677240.1:ENST00000677618.1:ENST00000679155.1:ENST00000679280.1:ENST00000678036.1:ENST00000678476.1:ENST00000678504.1:ENST00000677247.1:ENST00000677655.1:ENST00000678351.1:ENST00000679238.1:ENST00000677487.1:ENST00000677506.1:ENST00000678666.1:ENST00000676560.1:ENST00000673650.1:ENST00000674034.1:ENST00000369983.5:ENST00000679003.1:ENST00000678486.1:ENST00000676682.1:ENST00000676807.1:ENST00000676993.1:ENST00000678575.1:ENST00000677522.1:ENST00000678293.1:ENST00000679087.1:ENST00000677683.1:ENST00000676861.1:ENST00000677491.1:ENST00000677461.1:ENST00000677871.1:ENST00000677431.1:ENST00000678222.1:ENST00000678826.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	31	2	2.29842	3.41438	4.53034	0.0552483	0.00672609	0.165463	0.0738715
chr3	15045494	15045593	1372776	0	+	0.444444	(0.44,0.476]	chr3	144690	26	UTR3	UTR3:EXON_MRNA:INTRON	NR2C2	ENSG00000177463.16	ENST00000425241.6:ENST00000617312.4:ENST00000439011.5:ENST00000413194.1	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	2.29842	3.41438	4.53034	0.0552483	0.00672609	0.165463	0.0738715
chr8	105456658	105456758	3838628	0	+	0.45	(0.44,0.476]	chr8	354063	50	INTRON	INTRON	ZFPM2	ENSG00000169946.14	ENST00000407775.7:ENST00000520492.5:ENST00000520027.5:ENST00000524235.5:ENST00000511341.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	31	2	2.29842	3.41438	4.53034	0.0552483	0.00672609	0.165463	0.0738715
chr8	124361662	124361762	4043407	0	-	0.47	(0.44,0.476]	chr8	368840	305	INTRON	INTRON	TMEM65	ENSG00000164983.8	ENST00000297632.8	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	2.29842	3.41438	4.53034	0.0552483	0.00672609	0.165463	0.0738715
chr9	126817212	126817312	4199473	0	+	0.46	(0.44,0.476]	chr9	383325	79	INTRON	INTRON	ZBTB43	ENSG00000169155.10	ENST00000449886.5:ENST00000450858.1:ENST00000373464.5	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	2.29842	3.41438	4.53034	0.0552483	0.00672609	0.165463	0.0738715
chr7	111298590	111298690	3621468	0	-	0.49	(0.476,0.515]	chr7	337093	3347	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	35	2	2.99852	3.4143499999999998	3.83018	0.0423385	0.0077575	0.161744	0.0757402
chr15	44291054	44291154	6013088	0	+	0.46	(0.44,0.476]	chr15	572826	13	INTRON	INTRON	GOLM2	ENSG00000166734.20	ENST00000299957.11:ENST00000559222.5:ENST00000557945.5:ENST00000650436.1:ENST00000429162.2:ENST00000345795.6:ENST00000558735.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	47	2	1.92837	3.4141850000000002	4.9	0.0222222	0.00423315	0.124303	0.0572185
chr4	48419324	48419424	1957812	0	+	0.51	(0.476,0.515]	chr4	196163	243	INTRON	INTRON	SLAIN2	ENSG00000109171.15	ENST00000264313.11:ENST00000512093.5:ENST00000510595.1	protein_coding	protein_coding	protein_coding	protein_coding	2	64	2	3.33416	3.414135	3.49411	0.00230489	9.23453e-4	0.0428247	0.0278392
chr17	39433368	39433463	6766975	0	-	0.378947	(0.378,0.408]	chr17	665566	10	INTRON	INTRON	MED1	ENSG00000125686.12	ENST00000394287.7:ENST00000300651.11:ENST00000577831.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	32	2	2.30961	3.414075	4.51854	0.055088	0.00748824	0.165463	0.0772645
chr17	76147809	76147907	6840740	0	-	0.387755	(0.378,0.408]	chr17	676605	1	INTRON	INTRON	RNF157	ENSG00000141576.16	ENST00000647930.1:ENST00000269391.11:ENST00000319945.10:ENST00000589317.1:ENST00000591355.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	32	2	2.30961	3.414075	4.51854	0.055088	0.00748824	0.165463	0.0772645
chr3	47908339	47908438	1685679	0	-	0.40404	(0.378,0.408]	chr3	172207	50	INTRON	INTRON	MAP4	ENSG00000047849.22	ENST00000429422.5:ENST00000683076.1:ENST00000395734.7:ENST00000426837.6:ENST00000360240.10:ENST00000383736.3:ENST00000482752.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	32	2	2.30961	3.414075	4.51854	0.055088	0.00748824	0.165463	0.0772645
chr1	89850655	89850755	159822	0	+	0.37	(0.35,0.378]	chr1	17285	36	INTRON	INTRON	LRRC8D	ENSG00000171492.14	ENST00000525774.5:ENST00000337338.9:ENST00000394593.7:ENST00000532201.5:ENST00000414841.1:ENST00000527156.1:ENST00000441269.2	protein_coding	protein_coding	protein_coding	protein_coding	2	41	2	2.10859	3.41406	4.71953	0.0272722	0.0103314	0.136494	0.0850389
chr1	180884164	180884263	272132	0	+	0.373737	(0.35,0.378]	chr1	31696	2	UTR3	UTR3:EXON_MRNA	XPR1	ENSG00000143324.14	ENST00000367590.9:ENST00000367589.3	protein_coding	protein_coding	protein_coding	protein_coding	2	41	2	2.10859	3.41406	4.71953	0.0272722	0.0103314	0.136494	0.0850389
chr15	87689674	87689774	6256451	0	-	0.37	(0.35,0.378]	chr15	596826	1463	INTRON	INTRON	ENSG00000259560	ENSG00000259560.2	ENST00000665121.1:ENST00000560439.1	lncRNA	lncRNA	lncRNA	lncRNA	2	41	2	2.10859	3.41406	4.71953	0.0272722	0.0103314	0.136494	0.0850389
chr1	113486831	113486931	189677	0	+	0.46	(0.44,0.476]	chr1	20964	825	INTRON	INTRON	MAGI3	ENSG00000081026.19	ENST00000307546.14:ENST00000369617.8:ENST00000369615.5:ENST00000369611.4:ENST00000486456.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	47	2	1.62896	3.4138800000000002	5.1988	0.0546679	0.00151532	0.182674	0.0352794
chr10	68520895	68520994	4640218	0	-	0.525253	(0.515,0.57]	chr10	426805	28	INTRON	INTRON	SLC25A16	ENSG00000122912.15	ENST00000609923.6:ENST00000493963.5:ENST00000491102.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	56	2	2.05789	3.4138650000000004	4.76984	0.00786509	0.00198034	0.076155	0.0411469
chr7	26199760	26199855	3506231	0	-	0.494737	(0.476,0.515]	chr7	327192	7	UTR5	UTR5:EXON_MRNA:INTRON	HNRNPA2B1	ENSG00000122566.22	ENST00000679318.1:ENST00000677339.1:ENST00000678501.1:ENST00000676903.1:ENST00000608362.2:ENST00000677631.1:ENST00000676749.1:ENST00000677574.1:ENST00000679123.1:ENST00000677906.1:ENST00000476233.2:ENST00000677669.1:ENST00000677321.1:ENST00000678277.1:ENST00000677571.1:ENST00000679124.1:ENST00000676932.1:ENST00000678973.1:ENST00000678183.1:ENST00000679021.1:ENST00000678035.1:ENST00000677075.1:ENST00000678075.1:ENST00000678631.1:ENST00000678998.1:ENST00000490912.6:ENST00000354667.8:ENST00000618183.5:ENST00000677839.1:ENST00000677037.1:ENST00000678449.1:ENST00000679001.1:ENST00000678962.1:ENST00000676524.1:ENST00000678935.1:ENST00000678675.1:ENST00000676746.1:ENST00000356674.8:ENST00000678431.1:ENST00000678697.1:ENST00000678779.1:ENST00000676497.1:ENST00000677396.1:ENST00000360787.8:ENST00000679243.1:ENST00000677656.1:ENST00000463181.5:ENST00000678884.1:ENST00000495810.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	16	417	2	3.27778	3.41384	3.5499	9.38685e-7	1.12078e-7	6.0295e-4	1.48683e-4
chr12	132630814	132630914	5448557	0	-	0.52	(0.515,0.57]	chr12	521672	41	INTRON	INTRON	POLE	ENSG00000177084.18	ENST00000320574.10:ENST00000434528.4:ENST00000672742.1:ENST00000672002.1:ENST00000537064.5:ENST00000534922.5:ENST00000535270.5:ENST00000544692.5:ENST00000538196.1:ENST00000544870.5:ENST00000441786.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	41	2	2.53845	3.41383	4.28921	0.00990051	0.00632226	0.0877296	0.0687526
chr14	58287222	58287321	5904634	0	-	0.262626	[0,0.28]	chr14	560829	3	INTRON	INTRON	PSMA3-AS1	ENSG00000257621.9	ENST00000554360.5:ENST00000556002.5:ENST00000555275.5:ENST00000554378.5:ENST00000555707.5:ENST00000556400.5:ENST00000557660.5:ENST00000553657.5:ENST00000555037.1:ENST00000551597.6	lncRNA	lncRNA	lncRNA	lncRNA	1	40	2	2.27119	3.413685	4.55618	0.070351	0.0171034	0.184298	0.110899
chr15	41305134	41305234	6004600	0	+	0.25	[0,0.28]	chr15	571273	72	EXON_LNCRNA	EXON_LNCRNA:INTRON	OIP5-AS1	ENSG00000247556.6	ENST00000500949.6:ENST00000501665.2	lncRNA	lncRNA	lncRNA	lncRNA	1	40	2	2.27119	3.413685	4.55618	0.070351	0.0171034	0.184298	0.110899
chr4	131969825	131969925	2241690	0	-	0.27	[0,0.28]	chr4	219337	358	INTRON	INTRON	ENSG00000251555	ENSG00000251555.1	ENST00000510592.1	lncRNA	lncRNA	lncRNA	lncRNA	1	40	2	2.27119	3.413685	4.55618	0.070351	0.0171034	0.184298	0.110899
chr8	27824804	27824904	3927201	0	-	0.24	[0,0.28]	chr8	359598	12	INTRON	INTRON	PBK	ENSG00000168078.10	ENST00000301905.9:ENST00000522944.5:ENST00000524266.1:ENST00000521226.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	40	2	2.27119	3.413685	4.55618	0.070351	0.0171034	0.184298	0.110899
chr9	37196644	37196744	4118423	0	+	0.24	[0,0.28]	chr9	375389	97	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000461038.5:ENST00000488607.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	40	2	2.27119	3.413685	4.55618	0.070351	0.0171034	0.184298	0.110899
chr20	63213064	63213163	7362750	0	-	0.50505	(0.476,0.515]	chr20	751230	89	INTRON	INTRON	YTHDF1	ENSG00000149658.18	ENST00000370339.8:ENST00000370334.4	protein_coding	protein_coding	protein_coding	protein_coding	5	61	2	1.73294	3.413585	5.09423	0.0174121	0.00204588	0.112632	0.04086
chr6	30721318	30721403	2841347	0	+	0.588235	(0.57,1]	chr6	267064	4	INTRON	INTRON	TUBB	ENSG00000196230.14	ENST00000681435.1:ENST00000327892.13	protein_coding	protein_coding	protein_coding	protein_coding	6	46	2	1.95367	3.4135	4.87333	0.00422673	3.21412e-4	0.0572185	0.0159645
chr17	60357501	60357601	6805529	0	-	0.29	(0.28,0.32]	chr17	672366	115	INTRON	INTRON	USP32	ENSG00000170832.13	ENST00000300896.9:ENST00000590133.5:ENST00000589335.5:ENST00000393003.7:ENST00000588898.1:ENST00000589761.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	37	2	2.39347	3.4134349999999998	4.4334	0.0504457	0.0163355	0.156383	0.109464
chr20	519713	519812	7303737	0	-	0.282828	(0.28,0.32]	chr20	743561	90	INTRON	INTRON	CSNK2A1	ENSG00000101266.19	ENST00000646561.1:ENST00000217244.9:ENST00000643660.1:ENST00000645623.1:ENST00000400227.8:ENST00000349736.10:ENST00000644170.1:ENST00000643700.1:ENST00000645910.1:ENST00000645840.1:ENST00000646305.1:ENST00000645260.1:ENST00000642689.1:ENST00000645234.1:ENST00000646814.1:ENST00000646477.1:ENST00000644885.1:ENST00000644710.1:ENST00000647155.1:ENST00000644003.1:ENST00000645249.1:ENST00000647026.1:ENST00000400217.7:ENST00000647348.1:ENST00000643600.1:ENST00000643680.1:ENST00000460062.7:ENST00000643968.1:ENST00000644177.1:ENST00000609525.2:ENST00000645091.1:ENST00000609606.6:ENST00000608066.6:ENST00000646908.1:ENST00000645187.1:ENST00000642160.1:ENST00000608490.2:ENST00000643910.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	37	2	2.39347	3.4134349999999998	4.4334	0.0504457	0.0163355	0.156383	0.109464
chr7	33056275	33056375	3516369	0	-	0.31	(0.28,0.32]	chr7	327910	103	INTRON	INTRON	NT5C3A	ENSG00000122643.23	ENST00000456458.5:ENST00000610140.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	37	2	2.39347	3.4134349999999998	4.4334	0.0504457	0.0163355	0.156383	0.109464
chr8	140957027	140957127	4079634	0	-	0.29	(0.28,0.32]	chr8	370582	23	INTRON	INTRON	PTK2	ENSG00000169398.20	ENST00000696786.1:ENST00000522684.5:ENST00000395218.3:ENST00000521059.5:ENST00000519993.5:ENST00000340930.7:ENST00000524357.5:ENST00000521791.5:ENST00000523067.5:ENST00000520828.5:ENST00000519881.5:ENST00000520892.5:ENST00000523803.5:ENST00000521907.5:ENST00000517453.5:ENST00000520045.5:ENST00000521332.5:ENST00000524040.5:ENST00000523679.1:ENST00000524257.5:ENST00000523797.1:ENST00000519635.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	37	2	2.39347	3.4134349999999998	4.4334	0.0504457	0.0163355	0.156383	0.109464
chr3	43538319	43538419	1674597	0	-	0.31	(0.28,0.32]	chr3	170972	1052	INTRON	INTRON	ANO10	ENSG00000160746.13	ENST00000292246.8:ENST00000350459.8:ENST00000396091.7:ENST00000414522.6:ENST00000451430.6:ENST00000448045.1	protein_coding	protein_coding	protein_coding	protein_coding	2	45	2	2.0243	3.413425	4.80255	0.0364967	0.0137406	0.153759	0.0949306
chr19	17936079	17936164	7031915	0	+	0.588235	(0.57,1]	chr19	700552	3	SS3_PROX	SS3_PROX:INTRON	CCDC124	ENSG00000007080.11	ENST00000445755.7:ENST00000602080.1:ENST00000597436.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	36	2	3.2676	3.4134	3.5592	0.00176203	4.21089e-4	0.0376652	0.0183576
chr7	131471540	131471640	3417901	0	+	0.34	(0.32,0.35]	chr7	319282	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	MKLN1	ENSG00000128585.18	ENST00000421797.6:ENST00000352689.11:ENST00000494785.5:ENST00000458153.5:ENST00000498778.5:ENST00000496815.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	121	2	2.56236	3.41333	4.2643	0.002892	2.41647e-5	0.0476886	0.00385018
chr2	222926421	222926516	1021886	0	+	0.294737	(0.28,0.32]	chr2	109329	15	INTRON	INTRON	ACSL3	ENSG00000123983.15	ENST00000392066.7:ENST00000407441.5:ENST00000680251.1:ENST00000679541.1:ENST00000681906.1:ENST00000679545.1:ENST00000679932.1:ENST00000680100.1:ENST00000680475.1:ENST00000680525.1:ENST00000680420.1:ENST00000681326.1:ENST00000681292.1:ENST00000681017.1:ENST00000680395.1:ENST00000680736.1:ENST00000680147.1:ENST00000357430.8:ENST00000681009.1:ENST00000679514.1:ENST00000681697.1:ENST00000680921.1:ENST00000681383.1:ENST00000679558.1:ENST00000680684.1:ENST00000680424.1:ENST00000421680.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	45	2	1.83771	3.413215	4.98872	0.0591725	0.00838468	0.189982	0.0774402
chr14	24228520	24228616	5845109	0	-	0.5	(0.476,0.515]	chr14	556074	21	EXON_LNCRNA	EXON_LNCRNA:INTRON	NEDD8	ENSG00000129559.13	ENST00000250495.10:ENST00000396828.8:ENST00000527046.5:ENST00000531430.5:ENST00000526430.1:ENST00000524927.1:ENST00000533242.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	39	2	2.13304	3.41312	4.6932	0.024866	0.00753088	0.132101	0.074841
chr10	42347645	42347745	4603250	0	-	0.21	[0,0.28]	chr10	424077	67	INTRON	INTRON	ENSG00000215146	ENSG00000215146.5	ENST00000609841.1:ENST00000650175.1:ENST00000423987.2:ENST00000609034.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	1	41	2	2.44242	3.4130899999999995	4.38376	0.0491024	0.0258536	0.155269	0.133676
chr11	20501925	20502025	4752072	0	+	0.27	[0,0.28]	chr11	440049	73	INTRON	INTRON	PRMT3	ENSG00000185238.13	ENST00000330796.9:ENST00000331079.11:ENST00000437750.2:ENST00000529592.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	41	2	2.44242	3.4130899999999995	4.38376	0.0491024	0.0258536	0.155269	0.133676
chr15	43462990	43463089	6161538	0	-	0.424242	(0.408,0.44]	chr15	586748	54	INTRON	INTRON	TP53BP1	ENSG00000067369.14	ENST00000382044.9:ENST00000263801.7:ENST00000382039.7:ENST00000450115.6:ENST00000572085.5:ENST00000413546.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	47	2	2.49218	3.4130899999999995	4.334	0.011982	0.00855168	0.0962115	0.0780217
chr2	216163247	216163347	1014898	0	+	0.41	(0.408,0.44]	chr2	108025	8	INTRON	INTRON	XRCC5	ENSG00000079246.16	ENST00000392133.7:ENST00000392132.7:ENST00000460284.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	51	2	1.64062	3.41299	5.18536	0.0557275	6.17381e-4	0.165463	0.0223951
chr1	179214847	179214947	592931	0	-	0.5	(0.476,0.515]	chr1	71074	719	INTRON	INTRON	ABL2	ENSG00000143322.21	ENST00000502732.6:ENST00000367623.8:ENST00000507173.5:ENST00000511413.5:ENST00000668691.1:ENST00000392043.4:ENST00000660584.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	29	2	2.47949	3.412985	4.34648	0.0326974	0.0193566	0.145164	0.108861
chr10	838584	838682	4541643	0	-	0.479592	(0.476,0.515]	chr10	419249	17	INTRON	INTRON	LARP4B	ENSG00000107929.16	ENST00000688365.1:ENST00000316157.8:ENST00000690516.1:ENST00000689323.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	29	2	2.47949	3.412985	4.34648	0.0326974	0.0193566	0.145164	0.108861
chr10	74226187	74226287	4456520	0	+	0.51	(0.476,0.515]	chr10	411547	12	INTRON	INTRON	ADK	ENSG00000156110.15	ENST00000672429.1:ENST00000539909.6:ENST00000286621.7:ENST00000673352.1:ENST00000673310.1:ENST00000672920.1:ENST00000672394.1:ENST00000372734.5:ENST00000673027.1:ENST00000541550.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	29	2	2.47949	3.412985	4.34648	0.0326974	0.0193566	0.145164	0.108861
chr12	123586449	123586548	5243020	0	+	0.515152	(0.476,0.515]	chr12	498261	10	UTR5	UTR5:EXON_MRNA:SS3_PROX:INTRON	TMED2	ENSG00000086598.11	ENST00000438031.2:ENST00000543425.1:ENST00000262225.8:ENST00000544188.1:ENST00000509052.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	29	2	2.47949	3.412985	4.34648	0.0326974	0.0193566	0.145164	0.108861
chr17	44499235	44499334	6780799	0	-	0.484848	(0.476,0.515]	chr17	668697	240	INTRON	INTRON	GPATCH8	ENSG00000186566.13	ENST00000591680.6:ENST00000587228.5:ENST00000585614.1:ENST00000590041.5:ENST00000592746.5:ENST00000586037.5:ENST00000592154.1:ENST00000588554.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	29	2	2.47949	3.412985	4.34648	0.0326974	0.0193566	0.145164	0.108861
chr2	64584724	64584822	798283	0	+	0.5	(0.476,0.515]	chr2	89210	31	INTRON	INTRON	AFTPH	ENSG00000119844.17	ENST00000695864.1:ENST00000238856.8:ENST00000409933.6:ENST00000695867.1:ENST00000695960.1:ENST00000695866.1:ENST00000695865.1:ENST00000695869.1:ENST00000498706.5:ENST00000409183.5:ENST00000487769.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	29	2	2.47949	3.412985	4.34648	0.0326974	0.0193566	0.145164	0.108861
chr20	35038906	35039006	7332361	0	-	0.49	(0.476,0.515]	chr20	746937	32	INTRON	INTRON	TRPC4AP	ENSG00000100991.12	ENST00000252015.3:ENST00000451813.6	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	2.47949	3.412985	4.34648	0.0326974	0.0193566	0.145164	0.108861
chr3	172253940	172254040	1561700	0	+	0.49	(0.476,0.515]	chr3	161582	20	INTRON	INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000469491.5:ENST00000336824.8:ENST00000416957.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	29	2	2.47949	3.412985	4.34648	0.0326974	0.0193566	0.145164	0.108861
chr9	130127866	130127966	4211712	0	+	0.49	(0.476,0.515]	chr9	386092	3	SS5_PROX	SS5_PROX:INTRON	GPR107	ENSG00000148358.20	ENST00000372406.5:ENST00000372410.7:ENST00000347136.11:ENST00000493417.5:ENST00000610997.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	29	2	2.47949	3.412985	4.34648	0.0326974	0.0193566	0.145164	0.108861
chr7	10739198	10739298	3484172	0	-	0.59	(0.57,1]	chr7	325772	1773	INTRON	INTRON	MGC4859	ENSG00000283117.1	ENST00000634803.1	lncRNA	lncRNA	lncRNA	lncRNA	3	47	2	3.01672	3.412975	3.80923	5.94133e-4	1.11529e-4	0.0221865	0.00945289
chr1	21722547	21722641	396242	0	-	0.489362	(0.476,0.515]	chr1	47269	4	INTRON	INTRON	USP48	ENSG00000090686.16	ENST00000400301.5:ENST00000308271.14:ENST00000374732.7:ENST00000529637.5:ENST00000487880.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	39	2	1.91817	3.41289	4.90761	0.0459211	0.00386428	0.164984	0.0542786
chr8	127945439	127945539	3861573	0	+	0.51	(0.476,0.515]	chr8	355467	21	INTRON	INTRON	PVT1	ENSG00000249859.13	ENST00000667305.1:ENST00000690350.1:ENST00000653522.1:ENST00000661830.1:ENST00000657289.1:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000656880.1:ENST00000660200.1:ENST00000657211.1:ENST00000653845.1:ENST00000517525.2:ENST00000651587.1:ENST00000692980.1:ENST00000666353.1:ENST00000654324.1:ENST00000657693.1:ENST00000666080.1:ENST00000667539.1:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000664293.1:ENST00000662410.1:ENST00000670795.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000654091.1:ENST00000657356.1:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000662061.1:ENST00000656491.1:ENST00000667714.1:ENST00000654105.1:ENST00000665721.1:ENST00000660438.1:ENST00000659326.1:ENST00000666842.1:ENST00000517790.2:ENST00000654369.1:ENST00000664995.1:ENST00000656532.1:ENST00000661988.1:ENST00000670714.1:ENST00000669951.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000656693.1:ENST00000668123.1:ENST00000666776.1:ENST00000664299.1:ENST00000659912.1:ENST00000670532.1:ENST00000660896.1:ENST00000523068.2:ENST00000519481.6:ENST00000669082.1:ENST00000671088.1:ENST00000670204.1:ENST00000652695.1:ENST00000517838.6:ENST00000663461.1:ENST00000513868.6:ENST00000670626.1	lncRNA	lncRNA	lncRNA	lncRNA	2	39	2	1.91817	3.41289	4.90761	0.0459211	0.00386428	0.164984	0.0542786
chr1	17433069	17433168	384920	0	-	0.414141	(0.408,0.44]	chr1	45493	35	INTRON	INTRON	RCC2	ENSG00000179051.14	ENST00000375436.9:ENST00000375433.3	protein_coding	protein_coding	protein_coding	protein_coding	2	39	2	1.93243	3.41285	4.89327	0.0441194	0.00458906	0.162255	0.0595107
chr12	108659994	108660090	5406055	0	-	0.4375	(0.408,0.44]	chr12	515998	7	INTRON	INTRON	CORO1C	ENSG00000110880.11	ENST00000261401.8:ENST00000420959.6:ENST00000541050.5:ENST00000549384.5:ENST00000421578.6:ENST00000550542.5:ENST00000549772.5:ENST00000552871.5:ENST00000547294.5:ENST00000550032.5:ENST00000551550.5:ENST00000546571.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	39	2	1.93243	3.41285	4.89327	0.0441194	0.00458906	0.162255	0.0595107
chr1	174491744	174491844	260449	0	+	0.5	(0.476,0.515]	chr1	30824	423	INTRON	INTRON	RABGAP1L	ENSG00000152061.24	ENST00000357444.10:ENST00000251507.8:ENST00000681986.1:ENST00000367690.5:ENST00000526253.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	29	2	2.38442	3.4128499999999997	4.44128	0.0417472	0.0151924	0.161736	0.0994339
chr12	123299756	123299855	5444526	0	-	0.484848	(0.476,0.515]	chr12	520963	12	INTRON	INTRON	SBNO1	ENSG00000139697.14	ENST00000602398.3:ENST00000267176.8:ENST00000420886.6	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	2.38442	3.4128499999999997	4.44128	0.0417472	0.0151924	0.161736	0.0994339
chr15	59665542	59665642	6194540	0	-	0.49	(0.476,0.515]	chr15	590181	1	SS3_PROX	SS3_PROX:INTRON	ENSG00000227161:BNIP2	ENSG00000227161.1:ENSG00000140299.13	ENST00000441746.1:ENST00000267859.8:ENST00000607373.6:ENST00000612191.4:ENST00000478981.1:ENST00000439052.5:ENST00000415213.7	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA:processed_transcript	1	29	2	2.38442	3.4128499999999997	4.44128	0.0417472	0.0151924	0.161736	0.0994339
chr16	74953025	74953124	6526967	0	-	0.494949	(0.476,0.515]	chr16	632136	11	INTRON	INTRON	WDR59	ENSG00000103091.15	ENST00000262144.11:ENST00000616369.4:ENST00000536050.5:ENST00000568462.5:ENST00000568323.5:ENST00000563111.2:ENST00000562331.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	29	2	2.38442	3.4128499999999997	4.44128	0.0417472	0.0151924	0.161736	0.0994339
chr17	40240411	40240511	6609675	0	+	0.48	(0.476,0.515]	chr17	643734	195	INTRON	INTRON	WIPF2	ENSG00000171475.14	ENST00000323571.9:ENST00000583268.1:ENST00000494757.5:ENST00000582781.5:ENST00000585043.5:ENST00000394103.7:ENST00000583130.5:ENST00000584296.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	29	2	2.38442	3.4128499999999997	4.44128	0.0417472	0.0151924	0.161736	0.0994339
chr3	101361014	101361114	1757045	0	-	0.51	(0.476,0.515]	chr3	178281	90	INTRON	INTRON	SENP7	ENSG00000138468.16	ENST00000394095.7:ENST00000314261.11:ENST00000394094.6:ENST00000394091.5:ENST00000348610.3	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	2.38442	3.4128499999999997	4.44128	0.0417472	0.0151924	0.161736	0.0994339
chr7	65092052	65092152	3321875	0	+	0.5	(0.476,0.515]	chr7	308886	1	SS5_PROX	SS5_PROX:INTRON	GTF2IP14	ENSG00000226002.1	ENST00000441415.1	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	1	29	2	2.38442	3.4128499999999997	4.44128	0.0417472	0.0151924	0.161736	0.0994339
chr8	81679530	81679630	3979266	0	-	0.5	(0.476,0.515]	chr8	364573	3	SS3_PROX	SS3_PROX:INTRON	IMPA1	ENSG00000133731.10	ENST00000256108.10:ENST00000311489.8:ENST00000449740.6:ENST00000523942.5:ENST00000518188.5:ENST00000523710.5:ENST00000519964.5:ENST00000521360.5:ENST00000521979.5:ENST00000522997.5:ENST00000518202.5:ENST00000519816.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	29	2	2.38442	3.4128499999999997	4.44128	0.0417472	0.0151924	0.161736	0.0994339
chr9	131432894	131432994	4217360	0	+	0.51	(0.476,0.515]	chr9	386733	1	SS5_PROX	SS5_PROX:INTRON	PRRC2B	ENSG00000288701.1	ENST00000684596.1:ENST00000683519.1:ENST00000682501.1	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	2.38442	3.4128499999999997	4.44128	0.0417472	0.0151924	0.161736	0.0994339
chr2	76001750	76001850	818177	0	+	0.3	(0.28,0.32]	chr2	91391	1289	INTRON	INTRON	ENSG00000287474	ENSG00000287474.1	ENST00000670606.1	lncRNA	lncRNA	lncRNA	lncRNA	2	52	2	2.14002	3.412645	4.68527	0.0304107	0.00819419	0.130461	0.0810802
chr10	110598490	110598590	4521006	0	+	0.5	(0.476,0.515]	chr10	417078	2	SS5_PROX	SS5_PROX:INTRON	SMC3	ENSG00000108055.11	ENST00000684988.1:ENST00000361804.5:ENST00000685743.1:ENST00000689321.1:ENST00000689986.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	30	2	2.80729	3.41253	4.01777	0.0411361	0.0126008	0.1451	0.0980703
chr15	50892974	50893074	6174476	0	-	0.49	(0.476,0.515]	chr15	588530	15	INTRON	INTRON	ENSG00000273674	ENSG00000273674.6	ENST00000613161.4:ENST00000655436.2:ENST00000693106.1:ENST00000656830.1	lncRNA	lncRNA	lncRNA	lncRNA	1	30	2	2.80729	3.41253	4.01777	0.0411361	0.0126008	0.1451	0.0980703
chr18	58280025	58280124	6917577	0	+	0.484848	(0.476,0.515]	chr18	684526	229	INTRON	INTRON	NEDD4L	ENSG00000049759.20	ENST00000400345.8:ENST00000356462.10:ENST00000674845.1:ENST00000589054.5:ENST00000676024.1:ENST00000382850.8:ENST00000256830.13:ENST00000676223.1:ENST00000675147.1:ENST00000592846.5:ENST00000675801.1:ENST00000456986.5:ENST00000675502.1:ENST00000675137.1:ENST00000357895.9:ENST00000435432.6:ENST00000586263.5:ENST00000456173.6:ENST00000676251.1:ENST00000676226.1:ENST00000675865.1:ENST00000588494.5:ENST00000675221.1:ENST00000588066.5:ENST00000431212.6:ENST00000586268.5:ENST00000587190.5:ENST00000585323.5:ENST00000674636.1:ENST00000674856.1:ENST00000675434.1:ENST00000635997.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	30	2	2.80729	3.41253	4.01777	0.0411361	0.0126008	0.1451	0.0980703
chr2	62986530	62986630	795129	0	+	0.51	(0.476,0.515]	chr2	88840	68	INTRON	INTRON	EHBP1	ENSG00000115504.15	ENST00000405015.7:ENST00000431489.6:ENST00000263991.9:ENST00000405289.5:ENST00000444311.1:ENST00000422032.1:ENST00000496857.5:ENST00000491965.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	30	2	2.80729	3.41253	4.01777	0.0411361	0.0126008	0.1451	0.0980703
chr8	86353492	86353592	3789359	0	+	0.51	(0.476,0.515]	chr8	351308	102	INTRON	INTRON	WWP1	ENSG00000123124.14	ENST00000517970.6:ENST00000523863.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	30	2	2.80729	3.41253	4.01777	0.0411361	0.0126008	0.1451	0.0980703
chr22	17594128	17594228	7547465	0	-	0.42	(0.408,0.44]	chr22	771419	2	SS5_PROX	SS5_PROX:INTRON	ATP6V1E1	ENSG00000131100.13	ENST00000253413.10:ENST00000399796.6:ENST00000399798.6:ENST00000473248.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	33	2	2.71911	3.4125250000000005	4.10594	0.0219367	0.0189489	0.123836	0.108861
chr10	869708	869808	4541961	0	-	0.43	(0.408,0.44]	chr10	419275	3	SS5_PROX	SS5_PROX:INTRON	LARP4B	ENSG00000107929.16	ENST00000316157.8:ENST00000690516.1:ENST00000689323.1:ENST00000476529.5:ENST00000406525.6:ENST00000481118.1:ENST00000412411.1:ENST00000693234.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	29	2	2.49258	3.4124799999999995	4.33238	0.0314608	0.0218901	0.144381	0.11491
chr10	110261245	110261345	4520258	0	+	0.41	(0.408,0.44]	chr10	416935	1	SS5_PROX	SS5_PROX:INTRON	MXI1	ENSG00000119950.21	ENST00000332674.9:ENST00000453116.5:ENST00000361248.8:ENST00000239007.11:ENST00000460667.5:ENST00000393134.5:ENST00000651225.1:ENST00000652649.1:ENST00000651613.1:ENST00000652243.1:ENST00000651495.1:ENST00000652506.1:ENST00000650900.1:ENST00000651811.1:ENST00000651167.1:ENST00000651516.1:ENST00000651467.1:ENST00000651004.1:ENST00000650843.1:ENST00000651318.1:ENST00000650644.1:ENST00000650696.1:ENST00000652604.1:ENST00000651109.1:ENST00000652463.1:ENST00000651557.1:ENST00000650810.1:ENST00000650952.1:ENST00000484030.5:ENST00000652028.1:ENST00000651866.1:ENST00000651848.1:ENST00000442296.5:ENST00000652323.1:ENST00000369612.1:ENST00000650752.1:ENST00000651112.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	29	2	2.49258	3.4124799999999995	4.33238	0.0314608	0.0218901	0.144381	0.11491
chr12	926295	926395	5255254	0	-	0.42	(0.408,0.44]	chr12	500089	1	SS5_PROX	SS5_PROX:INTRON	RAD52	ENSG00000002016.18	ENST00000358495.8:ENST00000228345.9:ENST00000468231.5:ENST00000481052.5:ENST00000430095.6:ENST00000488642.6:ENST00000543912.5:ENST00000461568.5:ENST00000463750.5:ENST00000536177.5:ENST00000542584.5:ENST00000545564.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	29	2	2.49258	3.4124799999999995	4.33238	0.0314608	0.0218901	0.144381	0.11491
chr12	123750644	123750737	5244482	0	+	0.408602	(0.408,0.44]	chr12	498632	8	UTR5	UTR5:EXON_MRNA:SS3_PROX:INTRON	ATP6V0A2	ENSG00000185344.15	ENST00000330342.8:ENST00000675344.1:ENST00000540368.6:ENST00000674794.1:ENST00000675260.1:ENST00000534943.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	29	2	2.49258	3.4124799999999995	4.33238	0.0314608	0.0218901	0.144381	0.11491
chr14	71379294	71379394	5780055	0	+	0.43	(0.408,0.44]	chr14	547501	4	SS3_PROX	SS3_PROX:INTRON	SIPA1L1	ENSG00000197555.10	ENST00000555989.5:ENST00000553453.5:ENST00000556408.5:ENST00000381232.8:ENST00000554362.5:ENST00000556780.5:ENST00000554126.5:ENST00000555652.5:ENST00000557151.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	29	2	2.49258	3.4124799999999995	4.33238	0.0314608	0.0218901	0.144381	0.11491
chr2	73994935	73995035	811884	0	+	0.43	(0.408,0.44]	chr2	90842	13	INTRON	INTRON	TET3	ENSG00000187605.16	ENST00000409262.8	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	2.49258	3.4124799999999995	4.33238	0.0314608	0.0218901	0.144381	0.11491
chr2	174394352	174394452	1271339	0	-	0.41	(0.408,0.44]	chr2	134368	62	INTRON	INTRON	CIR1	ENSG00000138433.16	ENST00000342016.8:ENST00000461454.1:ENST00000472169.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	29	2	2.49258	3.4124799999999995	4.33238	0.0314608	0.0218901	0.144381	0.11491
chr3	49749626	49749726	1694514	0	-	0.41	(0.408,0.44]	chr3	173818	8	INTRON	INTRON	IP6K1	ENSG00000176095.12	ENST00000321599.9:ENST00000395238.5:ENST00000613416.4:ENST00000468463.5:ENST00000460540.1:ENST00000498149.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	29	2	2.49258	3.4124799999999995	4.33238	0.0314608	0.0218901	0.144381	0.11491
chr5	138013436	138013536	2730603	0	-	0.43	(0.408,0.44]	chr5	256991	11	INTRON	INTRON	FAM13B	ENSG00000031003.11	ENST00000689681.1:ENST00000033079.7:ENST00000425075.6:ENST00000420893.6:ENST00000514310.5	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	2.49258	3.4124799999999995	4.33238	0.0314608	0.0218901	0.144381	0.11491
chr5	173025118	173025218	2548584	0	+	0.44	(0.408,0.44]	chr5	243304	43	INTRON	INTRON	ATP6V0E1	ENSG00000113732.9	ENST00000519374.6:ENST00000519911.5:ENST00000265093.4	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	2.49258	3.4124799999999995	4.33238	0.0314608	0.0218901	0.144381	0.11491
chr7	50689938	50690037	3531632	0	-	0.424242	(0.408,0.44]	chr7	329460	149	INTRON	INTRON	GRB10	ENSG00000106070.20	ENST00000335866.7:ENST00000398812.6:ENST00000398810.6:ENST00000401949.6:ENST00000402578.5:ENST00000644769.1:ENST00000403097.6:ENST00000644879.1:ENST00000406641.5:ENST00000402497.6:ENST00000357271.9:ENST00000643299.1:ENST00000407526.6:ENST00000645075.2:ENST00000439044.7:ENST00000644716.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	29	2	2.49258	3.4124799999999995	4.33238	0.0314608	0.0218901	0.144381	0.11491
chrX	132027955	132028055	7723002	0	+	0.44	(0.408,0.44]	chrX	790023	39	INTRON	INTRON	STK26	ENSG00000134602.16	ENST00000354719.10:ENST00000394334.7:ENST00000481105.5:ENST00000394335.6:ENST00000496850.1	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	2.49258	3.4124799999999995	4.33238	0.0314608	0.0218901	0.144381	0.11491
chr5	132884145	132884231	2724444	0	-	0.27907	[0,0.28]	chr5	256236	2	INTRON	INTRON	AFF4	ENSG00000072364.13	ENST00000265343.10	protein_coding	protein_coding	protein_coding	protein_coding	2	91	2	3.24659	3.41234	3.57809	0.00570201	0.00109779	0.0656459	0.0303708
chr20	6023622	6023722	7230726	0	+	0.32	(0.28,0.32]	chr20	734845	2	SS5_PROX	SS5_PROX:INTRON	CRLS1	ENSG00000088766.12	ENST00000452938.5:ENST00000378863.9:ENST00000378868.4:ENST00000489345.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	170	2	1.95167	3.412325	4.87298	0.0113262	8.50723e-7	0.0886611	5.20245e-4
chr1	149231678	149231778	548208	0	-	0.42	(0.408,0.44]	chr1	64451	302	INTRON	INTRON	ENSG00000215861	ENSG00000215861.7	ENST00000685012.1:ENST00000313342.8:ENST00000663163.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	1	29	2	2.3975	3.412315	4.42713	0.040266	0.0173083	0.161534	0.104099
chr11	7992614	7992705	4728878	0	+	0.428571	(0.408,0.44]	chr11	437741	6	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	EIF3F	ENSG00000175390.15	ENST00000533626.5:ENST00000651655.1:ENST00000677121.1:ENST00000678993.1:ENST00000640290.2:ENST00000531572.2:ENST00000531329.6:ENST00000678132.1:ENST00000528653.2:ENST00000677179.1:ENST00000528763.2:ENST00000677795.1:ENST00000532882.2:ENST00000677866.1:ENST00000530219.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	29	2	2.3975	3.412315	4.42713	0.040266	0.0173083	0.161534	0.104099
chr17	4294343	4294441	6711635	0	-	0.438776	(0.408,0.44]	chr17	657704	46	INTRON	INTRON	UBE2G1	ENSG00000132388.13	ENST00000396981.7:ENST00000572484.5:ENST00000574633.5:ENST00000571980.1:ENST00000571953.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	29	2	2.3975	3.412315	4.42713	0.040266	0.0173083	0.161534	0.104099
chr3	27464129	27464229	1643875	0	-	0.42	(0.408,0.44]	chr3	168881	75	INTRON	INTRON	SLC4A7	ENSG00000033867.17	ENST00000425128.6:ENST00000454389.6:ENST00000445684.5:ENST00000437179.5:ENST00000438530.5:ENST00000440156.5:ENST00000446700.5:ENST00000455077.5:ENST00000457377.5:ENST00000437266.5:ENST00000428005.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	29	2	2.3975	3.412315	4.42713	0.040266	0.0173083	0.161534	0.104099
chr6	158045892	158045992	3017660	0	+	0.43	(0.408,0.44]	chr6	281501	21	INTRON	INTRON	SYNJ2	ENSG00000078269.15	ENST00000355585.9:ENST00000640338.1:ENST00000638626.1:ENST00000485863.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	29	2	2.3975	3.412315	4.42713	0.040266	0.0173083	0.161534	0.104099
chr7	140036518	140036618	3658984	0	-	0.43	(0.408,0.44]	chr7	339590	18	INTRON	INTRON	PARP12	ENSG00000059378.13	ENST00000263549.8:ENST00000473341.5:ENST00000488726.5:ENST00000489809.5:ENST00000491598.5:ENST00000470515.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	29	2	2.3975	3.412315	4.42713	0.040266	0.0173083	0.161534	0.104099
chr8	94422515	94422615	3992924	0	-	0.43	(0.408,0.44]	chr8	365518	108	INTRON	INTRON	RAD54B:FSBP	ENSG00000197275.14:ENSG00000265817.4	ENST00000336148.10:ENST00000517506.2:ENST00000463267.5:ENST00000518998.5:ENST00000523839.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	29	2	2.3975	3.412315	4.42713	0.040266	0.0173083	0.161534	0.104099
chrX	2458754	2458854	7745194	0	-	0.41	(0.408,0.44]	chrX	792966	331	INTRON	INTRON	DHRSX	ENSG00000169084.15	ENST00000334651.11:ENST00000412516.7:ENST00000444280.6:ENST00000441131.7:ENST00000478825.7:ENST00000430536.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	29	2	2.3975	3.412315	4.42713	0.040266	0.0173083	0.161534	0.104099
chr1	32323878	32323978	65040	0	+	0.37	(0.35,0.378]	chr1	8331	67	INTRON	INTRON	HDAC1	ENSG00000116478.12	ENST00000373548.8:ENST00000481281.5:ENST00000463172.5:ENST00000428704.1:ENST00000472928.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	42	2	2.34278	3.4123099999999997	4.48184	0.0191702	0.0129593	0.108861	0.0991015
chr1	38847080	38847179	427356	0	-	0.373737	(0.35,0.378]	chr1	51822	11	EXON_MRNA	EXON_MRNA:INTRON	RRAGC	ENSG00000116954.8	ENST00000373001.4:ENST00000474456.1:ENST00000493015.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	42	2	2.34278	3.4123099999999997	4.48184	0.0191702	0.0129593	0.108861	0.0991015
chr7	50608162	50608261	3530803	0	-	0.353535	(0.35,0.378]	chr7	329409	12	INTRON	INTRON	GRB10	ENSG00000106070.20	ENST00000335866.7:ENST00000398812.6:ENST00000398810.6:ENST00000401949.6:ENST00000402578.5:ENST00000644769.1:ENST00000403097.6:ENST00000644879.1:ENST00000406641.5:ENST00000402497.6:ENST00000357271.9:ENST00000643299.1:ENST00000407526.6:ENST00000645075.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	42	2	2.34278	3.4123099999999997	4.48184	0.0191702	0.0129593	0.108861	0.0991015
chrX	19353908	19353990	7629293	0	+	0.304878	(0.28,0.32]	chrX	781183	1	INTRON	INTRON	PDHA1	ENSG00000131828.14	ENST00000540249.5:ENST00000696704.1:ENST00000696705.1:ENST00000422285.7:ENST00000423505.6:ENST00000355808.10:ENST00000379805.4:ENST00000417819.6:ENST00000479146.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	146	2	3.18534	3.412165	3.63899	8.08132e-4	4.64392e-5	0.0263656	0.00555027
chr10	17677076	17677176	4399597	0	+	0.42	(0.408,0.44]	chr10	406163	36	INTRON	INTRON	STAM	ENSG00000136738.15	ENST00000377524.8:ENST00000377500.1:ENST00000445846.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	30	2	2.82042	3.412135	4.00385	0.0454568	0.0120121	0.149888	0.0962115
chr17	49726911	49727010	6793780	0	-	0.414141	(0.408,0.44]	chr17	670414	25	INTRON	INTRON	FAM117A	ENSG00000121104.8	ENST00000240364.7:ENST00000513602.5:ENST00000503855.5:ENST00000514018.5:ENST00000505159.5:ENST00000506156.1:ENST00000515240.5:ENST00000509347.5:ENST00000503720.1:ENST00000514841.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	30	2	2.82042	3.412135	4.00385	0.0454568	0.0120121	0.149888	0.0962115
chr19	47624994	47625094	7085921	0	+	0.44	(0.408,0.44]	chr19	709045	170	INTRON	INTRON	ENSG00000268746	ENSG00000268746.1	ENST00000599924.1	lncRNA	lncRNA	lncRNA	lncRNA	1	30	2	2.82042	3.412135	4.00385	0.0454568	0.0120121	0.149888	0.0962115
chr17	56899852	56899939	6799000	0	-	0.471264	(0.44,0.476]	chr17	671259	3	INTRON	INTRON	TRIM25	ENSG00000121060.19	ENST00000648772.1:ENST00000682766.1:ENST00000316881.9:ENST00000537230.3:ENST00000572021.6:ENST00000570473.5:ENST00000570749.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	40	2	2.39003	3.4119	4.43377	0.0162803	0.0106488	0.101453	0.0915714
chr16	58554160	58554260	6495598	0	-	0.28	[0,0.28]	chr16	628527	3	SS3_PROX	SS3_PROX:INTRON	CNOT1	ENSG00000125107.19	ENST00000317147.10:ENST00000569240.5:ENST00000567188.5:ENST00000441024.6:ENST00000569732.1:ENST00000562046.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	149	2	3.08562	3.41187	3.73812	0.00103473	2.54178e-4	0.029231300000000002	0.0142045
chr1	11796722	11796810	378848	0	-	0.420455	(0.408,0.44]	chr1	44469	3	SS3_PROX	SS3_PROX:INTRON	MTHFR	ENSG00000177000.13	ENST00000376590.9:ENST00000376592.6:ENST00000376583.7:ENST00000376585.6:ENST00000641747.1:ENST00000641805.1:ENST00000641446.1:ENST00000423400.7:ENST00000641407.1:ENST00000641759.1:ENST00000641721.1:ENST00000376486.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	47	2	1.93002	3.411645	4.89327	0.022095	0.00458906	0.123903	0.0595107
chr9	123074356	123074428	4196441	0	+	0.388889	(0.378,0.408]	chr9	382904	2	CDS	CDS:UTR3:EXON_MRNA	RABGAP1	ENSG00000011454.18	ENST00000456584.5:ENST00000373647.9:ENST00000474707.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	48	2	1.94559	3.411605	4.87762	0.0211434	0.00553849	0.122929	0.0648867
chrX	124029468	124029567	7717436	0	+	0.535354	(0.515,0.57]	chrX	789500	24	INTRON	INTRON	STAG2	ENSG00000101972.20	ENST00000394477.5:ENST00000218089.13:ENST00000455404.5:ENST00000483575.5:ENST00000687810.1:ENST00000687071.1:ENST00000469481.1:ENST00000371160.5:ENST00000435103.5:ENST00000687852.1:ENST00000371145.8:ENST00000692982.1:ENST00000371157.7:ENST00000691035.1:ENST00000686802.1:ENST00000691383.1:ENST00000686127.1:ENST00000371144.7:ENST00000458176.5:ENST00000466748.5:ENST00000471107.1:ENST00000428941.5:ENST00000435215.5:ENST00000394478.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	54	2	1.44237	3.4115650000000004	5.38076	0.0456196	3.24968e-4	0.164236	0.0165891
chr5	10381102	10381200	2317923	0	+	0.367347	(0.35,0.378]	chr5	224624	19	INTRON	INTRON	MARCHF6	ENSG00000145495.16	ENST00000274140.10:ENST00000449913.6:ENST00000502795.5:ENST00000511802.5:ENST00000503788.5:ENST00000640713.1:ENST00000510872.5:ENST00000507863.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	129	2	2.88445	3.41156	3.93867	0.00212567	4.94803e-6	0.041756	0.00151483
chr1	32328567	32328667	65089	0	+	0.49	(0.476,0.515]	chr1	8346	1	SS3_PROX	SS3_PROX:INTRON	HDAC1	ENSG00000116478.12	ENST00000373548.8:ENST00000428704.1:ENST00000490081.5:ENST00000482310.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	137	2	3.36103	3.4115450000000003	3.46206	1.15043e-4	2.34907e-5	0.00967384	0.00379453
chr15	28669333	28669428	5988744	0	+	0.421053	(0.408,0.44]	chr15	569388	6	INTRON	INTRON	HERC2P9	ENSG00000206149.11	ENST00000529624.5:ENST00000530420.5:ENST00000528584.5	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript:transcribed_unprocessed_pseudogene	3	87	2	3.37244	3.411315	3.45019	0.00152664	1.2469e-4	0.0353936	0.00953295
chr8	9012052	9012152	3695653	0	+	0.4	(0.378,0.408]	chr8	342918	3	SS5_PROX	SS5_PROX:INTRON	ERI1	ENSG00000104626.15	ENST00000519292.5:ENST00000250263.8:ENST00000520684.5:ENST00000520332.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	40	2	2.23831	3.41129	4.58427	0.0179575	0.0128325	0.114265	0.0926667
chr9	4846865	4846964	4095417	0	+	0.383838	(0.378,0.408]	chr9	373206	18	INTRON	INTRON	RCL1	ENSG00000120158.12	ENST00000381750.9:ENST00000442869.5:ENST00000381730.5:ENST00000381728.5:ENST00000448872.6:ENST00000441844.2	protein_coding	protein_coding	protein_coding	protein_coding	2	40	2	2.23831	3.41129	4.58427	0.0179575	0.0128325	0.114265	0.0926667
chr10	73061067	73061167	4647483	0	-	0.43	(0.408,0.44]	chr10	427530	71	INTRON	INTRON	P4HA1	ENSG00000122884.13	ENST00000394890.7:ENST00000307116.6:ENST00000373008.6:ENST00000440381.5:ENST00000263556.3	protein_coding	protein_coding	protein_coding	protein_coding	3	49	2	2.22268	3.4112349999999996	4.59979	0.0109537	0.00770925	0.0873034	0.0784002
chr12	131930919	131931014	5250018	0	+	0.484211	(0.476,0.515]	chr12	499248	4	INTRON	INTRON	PUS1	ENSG00000177192.14	ENST00000443358.6:ENST00000322060.9:ENST00000376649.8:ENST00000542167.2:ENST00000538037.5:ENST00000544662.1:ENST00000456665.6:ENST00000544213.5:ENST00000535067.5:ENST00000537484.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	88	2	3.19781	3.411225	3.62464	5.079e-4	4.3655e-4	0.0202328	0.0191798
chr19	936035	936134	6992590	0	+	0.59596	(0.57,1]	chr19	692392	29	INTRON	INTRON	ARID3A	ENSG00000116017.11	ENST00000263620.8:ENST00000587532.5:ENST00000457152.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	39	2	1.9324	3.4111900000000004	4.88998	0.00747247	4.016e-4	0.0772645	0.0185763
chr4	78803478	78803578	1981656	0	+	0.48	(0.476,0.515]	chr4	198463	264	INTRON	INTRON	BMP2K	ENSG00000138756.19	ENST00000389010.7:ENST00000502613.3:ENST00000502871.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	47	2	1.61586	3.411155	5.20645	0.0567093	0.00136049	0.185107	0.0336321
chr1	207778040	207778140	305171	0	+	0.36	(0.35,0.378]	chr1	35129	19	INTRON	INTRON	CD46	ENSG00000117335.21	ENST00000695779.1:ENST00000695777.1:ENST00000695778.1:ENST00000496723.2:ENST00000695782.1:ENST00000695781.1:ENST00000695780.1:ENST00000636114.2:ENST00000367042.6:ENST00000322875.8:ENST00000322918.9:ENST00000354848.5:ENST00000357714.5:ENST00000358170.6:ENST00000367041.5:ENST00000367047.5:ENST00000695783.1:ENST00000695784.1:ENST00000469535.5:ENST00000360212.6:ENST00000480003.5:ENST00000695786.1:ENST00000490278.2:ENST00000488596.5:ENST00000471987.1:ENST00000462968.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	96	2	2.80179	3.4111149999999997	4.02044	0.00223906	1.4631e-4	0.0435144	0.011065
chr17	82812458	82812557	6694817	0	+	0.606061	(0.57,1]	chr17	654897	23	INTRON	INTRON	TBCD	ENSG00000141556.22	ENST00000682479.1:ENST00000682722.1:ENST00000684464.1:ENST00000684544.1:ENST00000681983.1:ENST00000684361.1:ENST00000683184.1:ENST00000683282.1:ENST00000684408.1:ENST00000355528.9:ENST00000683444.1:ENST00000684776.1:ENST00000683041.1:ENST00000684760.1:ENST00000684349.1:ENST00000682213.1:ENST00000683009.1:ENST00000682921.1:ENST00000682107.1:ENST00000539345.6:ENST00000684000.1:ENST00000684188.1:ENST00000684429.1:ENST00000682610.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	27	2	1.77365	3.410875	5.0481	0.0670385	1.32594e-4	0.183051	0.00992554
chr19	38651556	38651656	7065767	0	+	0.42	(0.408,0.44]	chr19	705486	29	INTRON	INTRON	ACTN4	ENSG00000130402.13	ENST00000252699.7:ENST00000588618.5:ENST00000440400.2:ENST00000424234.7:ENST00000589528.1:ENST00000390009.7:ENST00000495553.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	71	2	1.82326	3.4108150000000004	4.99837	0.0141799	0.00131369	0.0959618	0.0333932
chr17	74206571	74206667	6672403	0	+	0.447917	(0.44,0.476]	chr17	651050	4	INTRON	INTRON	RPL38	ENSG00000172809.13	ENST00000439590.6:ENST00000311111.11:ENST00000584577.5:ENST00000534490.5:ENST00000533498.1	protein_coding	protein_coding	protein_coding	protein_coding	2	44	2	2.29126	3.4108	4.53034	0.0165638	0.00672609	0.102621	0.0738715
chr1	19178143	19178243	386495	0	-	0.24	[0,0.28]	chr1	46056	4	SS3_PROX	SS3_PROX:INTRON	UBR4	ENSG00000127481.15	ENST00000375254.8	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	2.43761	3.4107399999999997	4.38387	0.0501911	0.0423864	0.161744	0.156383
chr1	86862631	86862724	498591	0	-	0.27957	[0,0.28]	chr1	59167	3	UTR3	UTR3:EXON_MRNA	SELENOF	ENSG00000183291.18	ENST00000331835.10	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	2.43761	3.4107399999999997	4.38387	0.0501911	0.0423864	0.161744	0.156383
chr10	49915117	49915216	4615929	0	-	0.222222	[0,0.28]	chr10	425190	62	INTRON	INTRON	PARG	ENSG00000227345.9	ENST00000402038.7:ENST00000616448.2:ENST00000614063.4:ENST00000610922.1:ENST00000611974.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	36	2	2.43761	3.4107399999999997	4.38387	0.0501911	0.0423864	0.161744	0.156383
chr14	30613666	30613765	5674954	0	+	0.191919	[0,0.28]	chr14	540593	9	INTRON	INTRON	G2E3	ENSG00000092140.16	ENST00000206595.11:ENST00000438909.6:ENST00000648008.1:ENST00000553504.5:ENST00000548934.1:ENST00000549159.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	36	2	2.43761	3.4107399999999997	4.38387	0.0501911	0.0423864	0.161744	0.156383
chr16	67072381	67072481	6365980	0	+	0.19	[0,0.28]	chr16	611429	52	INTRON	INTRON	CBFB	ENSG00000067955.15	ENST00000651988.1:ENST00000652360.1:ENST00000561924.6:ENST00000290858.11:ENST00000412916.7:ENST00000564034.6:ENST00000650873.1:ENST00000563939.3:ENST00000565389.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	36	2	2.43761	3.4107399999999997	4.38387	0.0501911	0.0423864	0.161744	0.156383
chr19	21041067	21041166	7039320	0	+	0.272727	[0,0.28]	chr19	701855	44	INTRON	INTRON	ZNF430	ENSG00000118620.13	ENST00000599548.5:ENST00000594110.5:ENST00000261560.10	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	2.43761	3.4107399999999997	4.38387	0.0501911	0.0423864	0.161744	0.156383
chr21	10443743	10443842	7368432	0	+	0.212121	[0,0.28]	chr21	751975	285	INTRON	INTRON	BAGE2	ENSG00000187172.15	ENST00000474011.5:ENST00000470054.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	1	36	2	2.43761	3.4107399999999997	4.38387	0.0501911	0.0423864	0.161744	0.156383
chr3	180918115	180918215	1568659	0	+	0.28	[0,0.28]	chr3	162365	21	INTRON	INTRON	FXR1	ENSG00000114416.18	ENST00000469882.5:ENST00000484790.5:ENST00000465551.5:ENST00000305586.11:ENST00000475315.5:ENST00000491674.1:ENST00000357559.9:ENST00000468861.5:ENST00000491062.5:ENST00000479176.5:ENST00000445140.6:ENST00000472339.5:ENST00000484958.5:ENST00000480918.5:ENST00000484042.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	36	2	2.43761	3.4107399999999997	4.38387	0.0501911	0.0423864	0.161744	0.156383
chr5	36883818	36883917	2338500	0	+	0.222222	[0,0.28]	chr5	225947	63	INTRON	INTRON	NIPBL	ENSG00000164190.19	ENST00000282516.13:ENST00000448238.2:ENST00000652901.1	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	2.43761	3.4107399999999997	4.38387	0.0501911	0.0423864	0.161744	0.156383
chr5	64761851	64761951	2630383	0	-	0.28	[0,0.28]	chr5	249958	67	INTRON	INTRON	SREK1IP1	ENSG00000153006.16	ENST00000513458.9:ENST00000495198.6:ENST00000510616.5:ENST00000506252.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	36	2	2.43761	3.4107399999999997	4.38387	0.0501911	0.0423864	0.161744	0.156383
chr6	2892572	2892656	3047364	0	-	0.190476	[0,0.28]	chr6	283518	2	INTRON	INTRON	SERPINB9	ENSG00000170542.6	ENST00000380698.5	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	2.43761	3.4107399999999997	4.38387	0.0501911	0.0423864	0.161744	0.156383
chr7	27653124	27653223	3510847	0	-	0.272727	[0,0.28]	chr7	327353	31	INTRON	INTRON	HIBADH	ENSG00000106049.9	ENST00000265395.7:ENST00000428288.2:ENST00000496814.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	36	2	2.43761	3.4107399999999997	4.38387	0.0501911	0.0423864	0.161744	0.156383
chr8	43064215	43064315	3745929	0	+	0.26	[0,0.28]	chr8	348526	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	FNTA	ENSG00000168522.13	ENST00000533559.5:ENST00000526755.5:ENST00000302279.8:ENST00000527153.5:ENST00000533383.5:ENST00000533998.5:ENST00000524546.5:ENST00000531266.5:ENST00000533368.1:ENST00000525699.5:ENST00000529687.5:ENST00000533336.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	36	2	2.43761	3.4107399999999997	4.38387	0.0501911	0.0423864	0.161744	0.156383
chr8	54065547	54065647	3953514	0	-	0.19	[0,0.28]	chr8	362619	4	SS5_PROX	SS5_PROX:INTRON	LYPLA1	ENSG00000120992.18	ENST00000316963.8:ENST00000618914.4:ENST00000618741.1:ENST00000343231.10:ENST00000519272.5:ENST00000518546.5:ENST00000522007.5:ENST00000519891.5:ENST00000521352.5:ENST00000521898.5:ENST00000519926.5:ENST00000517297.5:ENST00000520896.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	36	2	2.43761	3.4107399999999997	4.38387	0.0501911	0.0423864	0.161744	0.156383
chr20	383702	383798	7219025	0	+	0.447917	(0.44,0.476]	chr20	733506	7	INTRON	INTRON	TRIB3	ENSG00000101255.12	ENST00000615226.4:ENST00000217233.9:ENST00000449710.5:ENST00000422053.3	protein_coding	protein_coding	protein_coding	protein_coding	2	65	2	3.02751	3.4106899999999998	3.79387	0.00715968	2.19099e-4	0.0723634	0.0129737
chr1	37989047	37989147	426531	0	-	0.46	(0.44,0.476]	chr1	51744	1	SS5_PROX	SS5_PROX:INTRON	SF3A3	ENSG00000183431.12	ENST00000373019.5:ENST00000489537.5:ENST00000461869.5:ENST00000470585.5:ENST00000462258.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	116	2	3.34209	3.4106449999999997	3.4792	1.47653e-4	1.09781e-4	0.0105526	0.00942675
chr10	858945	859045	4541850	0	-	0.49	(0.476,0.515]	chr10	419263	135	INTRON	INTRON	LARP4B	ENSG00000107929.16	ENST00000688365.1:ENST00000316157.8:ENST00000690516.1:ENST00000689323.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	50	2	1.58335	3.41052	5.23769	0.0640461	5.17244e-4	0.177882	0.0203753
chr7	157234118	157234218	3454915	0	+	0.28	[0,0.28]	chr7	323002	24	INTRON	INTRON	UBE3C	ENSG00000009335.18	ENST00000348165.10:ENST00000470408.5:ENST00000494532.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	148	2	2.80461	3.4105049999999997	4.0164	9.57163e-4	3.46128e-4	0.0284484	0.0173358
chr7	848417	848516	3268801	0	+	0.383838	(0.378,0.408]	chr7	303584	1	CDS	CDS:EXON_MRNA:INTRON	SUN1	ENSG00000164828.18	ENST00000452783.6:ENST00000389574.7:ENST00000401592.6:ENST00000413171.6:ENST00000405266.5:ENST00000340926.7:ENST00000425407.6:ENST00000450881.5:ENST00000493681.5:ENST00000471349.1:ENST00000419312.5:ENST00000429178.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	14	277	2	2.41816	3.4104650000000003	4.40277	6.90309e-5	5.75762e-7	0.00688956	4.48558e-4
chr15	66499818	66499886	6210603	0	-	0.411765	(0.408,0.44]	chr15	592715	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPL4	ENSG00000174444.15	ENST00000307961.11:ENST00000567229.5:ENST00000568588.5:ENST00000561775.5:ENST00000569696.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	107	2	3.02513	3.41045	3.79577	0.0059965	2.01134e-5	0.0700606	0.00363316
chr13	27439488	27439588	5566611	0	-	0.36	(0.35,0.378]	chr13	532054	1	SS5_PROX	SS5_PROX:INTRON	MTIF3	ENSG00000122033.15	ENST00000381116.5:ENST00000381120.8:ENST00000405591.3:ENST00000461838.5:ENST00000460973.5:ENST00000471771.5:ENST00000493719.5:ENST00000485650.5:ENST00000485959.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	33	2	2.32443	3.4103450000000004	4.49626	0.0544216	0.00917582	0.164972	0.0855292
chr21	9355116	9355215	7367684	0	+	0.373737	(0.35,0.378]	chr21	751936	9	INTRON	INTRON	ENSG00000278932	ENSG00000278932.5	ENST00000622961.3:ENST00000686553.1:ENST00000691955.1:ENST00000692626.1:ENST00000685951.1:ENST00000686510.1:ENST00000692884.1	lncRNA	lncRNA	lncRNA	lncRNA	1	33	2	2.32443	3.4103450000000004	4.49626	0.0544216	0.00917582	0.164972	0.0855292
chr1	67043516	67043615	477282	0	-	0.424242	(0.408,0.44]	chr1	57425	8	INTRON	INTRON	SLC35D1	ENSG00000116704.8	ENST00000235345.6	protein_coding	protein_coding	protein_coding	protein_coding	5	60	2	1.62843	3.410225	5.19202	0.025242	0.0016671	0.133676	0.0369207
chr16	3727421	3727519	6434504	0	-	0.469388	(0.44,0.476]	chr16	619389	25	UTR3	UTR3:EXON_MRNA	CREBBP	ENSG00000005339.15	ENST00000262367.10	protein_coding	protein_coding	protein_coding	protein_coding	5	138	2	3.0755	3.410195	3.74489	1.9693e-4	1.37916e-5	0.0128602	0.00276767
chr15	52033964	52034064	6029170	0	+	0.41	(0.408,0.44]	chr15	574427	57	INTRON	INTRON	MAPK6	ENSG00000069956.14	ENST00000560802.1:ENST00000691380.1:ENST00000558063.5:ENST00000560254.1:ENST00000681888.1:ENST00000261845.7:ENST00000680066.1:ENST00000680777.1:ENST00000558100.1:ENST00000680652.1:ENST00000558841.1:ENST00000558891.1:ENST00000560774.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	86	2	3.19065	3.4101850000000002	3.62972	7.19047e-4	3.2984e-4	0.0246202	0.0161352
chr18	47930051	47930151	6968716	0	-	0.59	(0.57,1]	chr18	689727	4	SS5_PROX	SS5_PROX:INTRON	SMAD2	ENSG00000175387.16	ENST00000262160.11:ENST00000402690.6:ENST00000356825.8:ENST00000591214.5:ENST00000587269.5:ENST00000586514.5:ENST00000587421.5:ENST00000589877.5	protein_coding	protein_coding	protein_coding	protein_coding	2	27	2	2.50742	3.410095	4.31277	0.00631173	0.00346264	0.0687526	0.0539802
chr1	206639442	206639542	301682	0	+	0.37	(0.35,0.378]	chr1	34676	4	SS5_PROX	SS5_PROX:INTRON	DYRK3	ENSG00000143479.18	ENST00000367109.8:ENST00000367108.7:ENST00000489878.1:ENST00000649163.1:ENST00000441486.5:ENST00000367106.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	97	2	2.4475	3.40989	4.37228	0.0106974	1.05524e-5	0.0862205	0.00237156
chr2	101287375	101287474	1199333	0	-	0.383838	(0.378,0.408]	chr2	128163	8	INTRON	INTRON	RNF149	ENSG00000163162.9	ENST00000424632.5:ENST00000295317.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	61	2	1.58985	3.409545	5.22924	0.0290335	0.00172721	0.141186	0.0374701
chr2	10186111	10186210	691365	0	+	0.414141	(0.408,0.44]	chr2	81109	300	INTRON	INTRON	RRM2	ENSG00000171848.16	ENST00000641498.1:ENST00000381786.7	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	2	43	2	2.11447	3.409285	4.7041	0.0285207	0.00381677	0.12666	0.0562562
chr1	173901257	173901356	257079	0	+	0.343434	(0.32,0.35]	chr1	30716	153	UTR3	UTR3:EXON_MRNA	ZBTB37	ENSG00000185278.16	ENST00000367701.10	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	2.4458	3.4092450000000003	4.37269	0.0425977	0.0154102	0.148082	0.108569
chr1	202423622	202423718	293511	0	+	0.34375	(0.32,0.35]	chr1	33770	5	INTRON	INTRON	PPP1R12B	ENSG00000077157.22	ENST00000391959.5:ENST00000608999.6:ENST00000480184.5:ENST00000356764.6:ENST00000476364.5:ENST00000466968.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	35	2	2.4458	3.4092450000000003	4.37269	0.0425977	0.0154102	0.148082	0.108569
chr1	211821264	211821364	631313	0	-	0.33	(0.32,0.35]	chr1	74654	277	INTRON	INTRON	LPGAT1	ENSG00000123684.13	ENST00000366997.9:ENST00000366996.1	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	2.4458	3.4092450000000003	4.37269	0.0425977	0.0154102	0.148082	0.108569
chr17	66499479	66499579	6664267	0	+	0.33	(0.32,0.35]	chr17	650332	28	INTRON	INTRON	PRKCA	ENSG00000154229.12	ENST00000413366.8:ENST00000578063.5:ENST00000284384.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	35	2	2.4458	3.4092450000000003	4.37269	0.0425977	0.0154102	0.148082	0.108569
chr1	12328841	12328938	29253	0	+	0.381443	(0.378,0.408]	chr1	3574	6	INTRON	INTRON	VPS13D	ENSG00000048707.15	ENST00000620676.6:ENST00000613099.4:ENST00000011700.10:ENST00000646917.1:ENST00000460333.5:ENST00000487188.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	30	2	2.71183	3.40922	4.10661	0.0399023	0.0170789	0.143072	0.110899
chr2	98457981	98458081	833010	0	+	0.4	(0.378,0.408]	chr2	93413	125	INTRON	INTRON	INPP4A	ENSG00000040933.16	ENST00000409016.8:ENST00000409851.8:ENST00000074304.9:ENST00000409463.5:ENST00000409540.7	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	2.71183	3.40922	4.10661	0.0399023	0.0170789	0.143072	0.110899
chr6	15408823	15408923	2824576	0	+	0.4	(0.378,0.408]	chr6	265198	342	INTRON	INTRON	JARID2	ENSG00000008083.14	ENST00000341776.7:ENST00000397311.4	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	2.71183	3.40922	4.10661	0.0399023	0.0170789	0.143072	0.110899
chr7	10708512	10708612	3483865	0	-	0.38	(0.378,0.408]	chr7	325772	1466	INTRON	INTRON	MGC4859	ENSG00000283117.1	ENST00000634803.1	lncRNA	lncRNA	lncRNA	lncRNA	1	30	2	2.71183	3.40922	4.10661	0.0399023	0.0170789	0.143072	0.110899
chr9	93538124	93538224	4158919	0	+	0.39	(0.378,0.408]	chr9	379180	54	INTRON	INTRON	FAM120A	ENSG00000048828.17	ENST00000277165.11:ENST00000427765.1	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	2.71183	3.40922	4.10661	0.0399023	0.0170789	0.143072	0.110899
chrX	109713468	109713568	7861502	0	-	0.38	(0.378,0.408]	chrX	801455	169	INTRON	INTRON	ACSL4	ENSG00000068366.21	ENST00000469796.7:ENST00000672401.1:ENST00000348502.10:ENST00000340800.7:ENST00000684030.1:ENST00000682031.1:ENST00000671846.1:ENST00000672282.1:ENST00000502391.6:ENST00000684414.1:ENST00000673016.1:ENST00000508092.5:ENST00000504383.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	30	2	2.71183	3.40922	4.10661	0.0399023	0.0170789	0.143072	0.110899
chr19	36550884	36550983	7174674	0	-	0.333333	(0.32,0.35]	chr19	725068	22	INTRON	INTRON	ZNF529	ENSG00000186020.13	ENST00000591340.6:ENST00000334116.7:ENST00000586115.5:ENST00000585983.5:ENST00000585960.5	protein_coding	protein_coding	protein_coding	protein_coding	7	227	2	3.0778	3.40916	3.74052	5.51812e-5	8.92201e-6	0.00609037	0.00230008
chr2	8958096	8958196	1063111	0	-	0.34	(0.32,0.35]	chr2	113376	2	SS5_PROX	SS5_PROX:INTRON	MBOAT2	ENSG00000143797.12	ENST00000305997.8:ENST00000486484.5:ENST00000477073.5:ENST00000474341.5:ENST00000462696.1:ENST00000460786.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	74	2	3.24087	3.40909	3.57731	0.00420518	7.67492e-4	0.0572185	0.0254532
chr19	11093890	11093988	7016857	0	+	0.540816	(0.515,0.57]	chr19	697422	26	INTRON	INTRON	LDLR	ENSG00000130164.14	ENST00000557933.5:ENST00000558518.6:ENST00000545707.5:ENST00000535915.5:ENST00000455727.6:ENST00000557958.1:ENST00000560502.5:ENST00000558013.5:ENST00000252444.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	180	2	3.02203	3.408995	3.79596	1.66254e-5	1.44064e-6	0.00307962	7.83796e-4
chr17	62539434	62539534	6653494	0	+	0.38	(0.378,0.408]	chr17	649352	27	INTRON	INTRON	TLK2	ENSG00000146872.19	ENST00000582809.5:ENST00000684213.1:ENST00000583843.5:ENST00000582195.6:ENST00000682085.1:ENST00000580705.5:ENST00000346027.10:ENST00000326270.13:ENST00000682203.1:ENST00000343388.11:ENST00000683536.1:ENST00000684440.1:ENST00000684772.1:ENST00000682274.1:ENST00000682827.1:ENST00000682075.1:ENST00000683104.1:ENST00000684012.1:ENST00000581041.5:ENST00000684553.1:ENST00000683737.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	90	2	2.66643	3.408985	4.15154	0.00470023	3.36054e-5	0.0600108	0.00463632
chr2	170819848	170819945	915941	0	+	0.525773	(0.515,0.57]	chr2	100758	8	INTRON	INTRON	GAD1	ENSG00000128683.14	ENST00000454603.5:ENST00000445006.5:ENST00000625689.2:ENST00000375272.5:ENST00000358196.8:ENST00000344257.9:ENST00000414527.6:ENST00000455008.5:ENST00000456864.5:ENST00000493875.5:ENST00000429023.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	39	2	2.73258	3.4089799999999997	4.08538	0.0253843	0.00260192	0.12011	0.0470772
chr17	58084482	58084582	6637074	0	+	0.6	(0.57,1]	chr17	648146	4	INTRON	INTRON	DYNLL2	ENSG00000264364.3	ENST00000579991.3	protein_coding	protein_coding	protein_coding	protein_coding	2	40	2	2.79889	3.408945	4.019	0.0110274	3.13356e-5	0.0927187	0.00467101
chr1	227217377	227217476	650707	0	-	0.454545	(0.44,0.476]	chr1	77096	38	INTRON	INTRON	CDC42BPA	ENSG00000143776.20	ENST00000366766.8:ENST00000366769.7:ENST00000334218.9:ENST00000366767.7:ENST00000366764.8:ENST00000478573.6:ENST00000682551.1:ENST00000462553.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	29	2	2.58033	3.40894	4.23755	0.0263357	0.0247511	0.131869	0.122221
chr12	46201498	46201598	5315837	0	-	0.46	(0.44,0.476]	chr12	505679	3	SS3_PROX	SS3_PROX:INTRON	SLC38A1	ENSG00000111371.16	ENST00000398637.10:ENST00000439706.5:ENST00000549049.5:ENST00000546893.5:ENST00000552197.5:ENST00000612161.4:ENST00000549633.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	29	2	2.58033	3.40894	4.23755	0.0263357	0.0247511	0.131869	0.122221
chrX	123602951	123603050	7877706	0	-	0.434343	(0.408,0.44]	chrX	802388	25	UTR3	UTR3:EXON_MRNA:INTRON	THOC2	ENSG00000125676.20	ENST00000448128.5:ENST00000245838.13:ENST00000441692.5:ENST00000492203.1:ENST00000497887.5:ENST00000618150.4:ENST00000432353.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	16	418	2	3.3216	3.40885	3.4961	2.04226e-6	5.27724e-8	9.82491e-4	9.68199e-5
chr11	73874244	73874320	4985815	0	-	0.434211	(0.408,0.44]	chr11	470908	1	SS5_PROX	SS5_PROX:INTRON	COA4	ENSG00000181924.7	ENST00000355693.5:ENST00000545127.1:ENST00000541455.1:ENST00000537289.1	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	2.84077	3.40878	3.97679	0.0299485	0.0132196	0.142135	0.0940535
chr8	86472589	86472689	3790583	0	+	0.41	(0.408,0.44]	chr8	351455	42	INTRON	INTRON	WWP1	ENSG00000123124.14	ENST00000520798.5	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	2.84077	3.40878	3.97679	0.0299485	0.0132196	0.142135	0.0940535
chr11	9439077	9439174	4729985	0	+	0.453608	(0.44,0.476]	chr11	437946	4	INTRON	INTRON	IPO7	ENSG00000205339.10	ENST00000379719.8	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	2.38219	3.4087199999999998	4.43525	0.045456	0.00897296	0.149888	0.0849778
chr17	73306298	73306397	6835500	0	-	0.444444	(0.44,0.476]	chr17	675279	191	INTRON	INTRON	CDC42EP4	ENSG00000179604.10	ENST00000335793.4:ENST00000439510.2:ENST00000581014.1:ENST00000580315.1:ENST00000579611.1:ENST00000581045.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	31	2	2.38219	3.4087199999999998	4.43525	0.045456	0.00897296	0.149888	0.0849778
chr21	45123441	45123540	7418345	0	+	0.454545	(0.44,0.476]	chr21	756281	21	INTRON	INTRON	ADARB1	ENSG00000197381.17	ENST00000462214.5:ENST00000460734.5:ENST00000348831.9:ENST00000389861.7:ENST00000389863.8:ENST00000492414.5:ENST00000496664.5:ENST00000437626.5:ENST00000449478.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	31	2	2.38219	3.4087199999999998	4.43525	0.045456	0.00897296	0.149888	0.0849778
chr3	136194791	136194871	1824225	0	-	0.4625	(0.44,0.476]	chr3	183522	4	SS5_PROX	SS5_PROX:INTRON	MSL2	ENSG00000174579.4	ENST00000309993.3:ENST00000481989.1:ENST00000491050.1:ENST00000473093.1	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	2.38219	3.4087199999999998	4.43525	0.045456	0.00897296	0.149888	0.0849778
chr2	173364127	173364222	922496	0	+	0.452632	(0.44,0.476]	chr2	101548	2	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	CDCA7	ENSG00000144354.15	ENST00000347703.7:ENST00000695912.1:ENST00000695913.1:ENST00000306721.8:ENST00000496441.5:ENST00000410019.3:ENST00000410101.7:ENST00000695914.1:ENST00000435616.5:ENST00000467411.5:ENST00000695901.1:ENST00000468359.1:ENST00000695911.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	64	2	3.26669	3.408685	3.55068	0.00305435	7.06861e-4	0.0493883	0.0241881
chr19	47208363	47208461	7084664	0	+	0.44898	(0.44,0.476]	chr19	708818	43	INTRON	INTRON	SAE1	ENSG00000142230.13	ENST00000413379.7:ENST00000270225.12:ENST00000598840.5:ENST00000414294.6:ENST00000660039.1:ENST00000664120.1:ENST00000596995.1:ENST00000392776.3:ENST00000659110.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	39	2	2.21079	3.4086299999999996	4.60647	0.0194581	0.0102339	0.119831	0.0850389
chr20	49115585	49115681	7351637	0	-	0.447917	(0.44,0.476]	chr20	749609	3	SS5_PROX	SS5_PROX:INTRON	STAU1	ENSG00000124214.21	ENST00000371856.7:ENST00000371828.7:ENST00000340954.11:ENST00000347458.9:ENST00000360426.8:ENST00000371792.5:ENST00000371802.5	protein_coding	protein_coding	protein_coding	protein_coding	2	39	2	2.21079	3.4086299999999996	4.60647	0.0194581	0.0102339	0.119831	0.0850389
chr8	38164831	38164929	3936058	0	-	0.44898	(0.44,0.476]	chr8	360621	6	INTRON	INTRON	LSM1	ENSG00000175324.10	ENST00000520755.5:ENST00000311351.9:ENST00000522515.5:ENST00000520286.5:ENST00000523511.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	39	2	2.21079	3.4086299999999996	4.60647	0.0194581	0.0102339	0.119831	0.0850389
chr8	127962521	127962621	3861744	0	+	0.46	(0.44,0.476]	chr8	355467	192	INTRON	INTRON	PVT1	ENSG00000249859.13	ENST00000667305.1:ENST00000690350.1:ENST00000653522.1:ENST00000661830.1:ENST00000657289.1:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000656880.1:ENST00000660200.1:ENST00000657211.1:ENST00000653845.1:ENST00000517525.2:ENST00000651587.1:ENST00000692980.1:ENST00000666353.1:ENST00000654324.1:ENST00000657693.1:ENST00000666080.1:ENST00000667539.1:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000664293.1:ENST00000662410.1:ENST00000670795.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000654091.1:ENST00000657356.1:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000662061.1:ENST00000656491.1:ENST00000667714.1:ENST00000654105.1:ENST00000665721.1:ENST00000660438.1:ENST00000659326.1:ENST00000666842.1:ENST00000517790.2:ENST00000654369.1:ENST00000664995.1:ENST00000656532.1:ENST00000661988.1:ENST00000670714.1:ENST00000669951.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000656693.1:ENST00000668123.1:ENST00000666776.1:ENST00000664299.1:ENST00000659912.1:ENST00000670532.1:ENST00000660896.1:ENST00000523068.2:ENST00000519481.6:ENST00000669082.1:ENST00000671088.1:ENST00000670204.1:ENST00000652695.1:ENST00000517838.6:ENST00000663461.1:ENST00000513868.6:ENST00000670626.1	lncRNA	lncRNA	lncRNA	lncRNA	2	39	2	2.21079	3.4086299999999996	4.60647	0.0194581	0.0102339	0.119831	0.0850389
chr8	23538387	23538486	3715192	0	+	0.242424	[0,0.28]	chr8	345217	66	INTRON	INTRON	SLC25A37	ENSG00000147454.14	ENST00000519973.6:ENST00000290075.10:ENST00000417331.6:ENST00000518881.5:ENST00000520654.1:ENST00000523930.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	49	2	2.05756	3.4086	4.75964	0.0352544	0.0232081	0.150301	0.118148
chr8	111026014	111026113	4027459	0	-	0.232323	[0,0.28]	chr8	367860	30	INTRON	INTRON	LINC01608	ENSG00000253877.6	ENST00000670392.1:ENST00000658597.1:ENST00000662310.1:ENST00000671489.1:ENST00000668858.1:ENST00000669698.1:ENST00000665803.1:ENST00000658028.1:ENST00000664704.1:ENST00000661954.1:ENST00000661561.1:ENST00000658081.1:ENST00000667145.1:ENST00000658119.1:ENST00000524283.5:ENST00000669893.1:ENST00000660015.1:ENST00000668956.1:ENST00000657323.1:ENST00000663408.1:ENST00000653924.1:ENST00000659834.1:ENST00000658508.1:ENST00000669744.1:ENST00000658733.1:ENST00000657532.1:ENST00000665011.1:ENST00000523557.2:ENST00000669997.1:ENST00000663666.1:ENST00000660667.1:ENST00000668936.1	lncRNA	lncRNA	lncRNA	lncRNA	2	49	2	2.05756	3.4086	4.75964	0.0352544	0.0232081	0.150301	0.118148
chr9	5098609	5098709	4096982	0	+	0.28	[0,0.28]	chr9	373351	73	INTRON	INTRON	JAK2	ENSG00000096968.14	ENST00000381652.4	protein_coding	protein_coding	protein_coding	protein_coding	2	49	2	2.05756	3.4086	4.75964	0.0352544	0.0232081	0.150301	0.118148
chr1	26761812	26761892	51837	0	+	0.4625	(0.44,0.476]	chr1	6579	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ARID1A	ENSG00000117713.21	ENST00000430799.7:ENST00000324856.13:ENST00000457599.6:ENST00000374152.7:ENST00000636219.1:ENST00000636958.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	29	2	2.29425	3.408475	4.5227	0.0518406	0.0128818	0.176696	0.0926667
chr1	174912286	174912386	264681	0	+	0.47	(0.44,0.476]	chr1	30917	144	INTRON	INTRON	RABGAP1L	ENSG00000152061.24	ENST00000251507.8:ENST00000681986.1:ENST00000529145.6:ENST00000325589.9:ENST00000469553.6:ENST00000367687.5:ENST00000347255.6:ENST00000489615.5:ENST00000478442.5:ENST00000465412.5:ENST00000486220.5:ENST00000392064.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	29	2	2.29425	3.408475	4.5227	0.0518406	0.0128818	0.176696	0.0926667
chr13	51962510	51962608	5596415	0	-	0.469388	(0.44,0.476]	chr13	534946	2	INTRON	INTRON	ATP7B	ENSG00000123191.16	ENST00000242839.10:ENST00000344297.9:ENST00000674147.1:ENST00000448424.7:ENST00000634620.1:ENST00000634296.1:ENST00000400370.8:ENST00000634844.1:ENST00000673772.1:ENST00000634308.1:ENST00000418097.7:ENST00000400366.6:ENST00000635406.1:ENST00000482841.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	29	2	2.29425	3.408475	4.5227	0.0518406	0.0128818	0.176696	0.0926667
chr19	37225030	37225121	7060258	0	+	0.472527	(0.44,0.476]	chr19	704878	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	ZNF383	ENSG00000188283.12	ENST00000586068.5:ENST00000586658.1:ENST00000590503.5:ENST00000684119.1:ENST00000589413.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	29	2	2.29425	3.408475	4.5227	0.0518406	0.0128818	0.176696	0.0926667
chr2	127290716	127290804	1222860	0	-	0.465909	(0.44,0.476]	chr2	130177	6	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	ERCC3	ENSG00000163161.14	ENST00000426778.5:ENST00000285398.7:ENST00000646042.1:ENST00000647169.1:ENST00000445889.5:ENST00000647496.1:ENST00000646654.1:ENST00000645233.1:ENST00000645736.1:ENST00000645467.1:ENST00000644317.1:ENST00000494464.5:ENST00000642308.1:ENST00000462306.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	29	2	2.29425	3.408475	4.5227	0.0518406	0.0128818	0.176696	0.0926667
chr3	9478154	9478240	1359750	0	+	0.465116	(0.44,0.476]	chr3	142828	1	SS3_PROX	SS3_PROX:INTRON	SETD5	ENSG00000168137.20	ENST00000399686.6	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	2.29425	3.408475	4.5227	0.0518406	0.0128818	0.176696	0.0926667
chr4	1899971	1900048	1910861	0	+	0.467532	(0.44,0.476]	chr4	191733	2	INTRON	INTRON	NSD2	ENSG00000109685.19	ENST00000508803.6:ENST00000507820.5:ENST00000508355.5:ENST00000514045.5:ENST00000515806.1:ENST00000398261.6:ENST00000382891.9:ENST00000353275.9:ENST00000382892.6:ENST00000382895.7:ENST00000312087.10:ENST00000420906.6:ENST00000503128.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	29	2	2.29425	3.408475	4.5227	0.0518406	0.0128818	0.176696	0.0926667
chr5	43299574	43299674	2614295	0	-	0.45	(0.44,0.476]	chr5	248522	2	INTRON	INTRON	HMGCS1	ENSG00000112972.15	ENST00000325110.11:ENST00000433297.2:ENST00000507004.1:ENST00000507293.1:ENST00000511774.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	29	2	2.29425	3.408475	4.5227	0.0518406	0.0128818	0.176696	0.0926667
chrX	109686934	109687033	7861232	0	-	0.464646	(0.44,0.476]	chrX	801440	11	INTRON	INTRON	ACSL4	ENSG00000068366.21	ENST00000469796.7:ENST00000672401.1:ENST00000348502.10:ENST00000340800.7:ENST00000684030.1:ENST00000682031.1:ENST00000671846.1:ENST00000672282.1:ENST00000502391.6:ENST00000684414.1:ENST00000673016.1:ENST00000505855.1:ENST00000508092.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	29	2	2.29425	3.408475	4.5227	0.0518406	0.0128818	0.176696	0.0926667
chr11	3721325	3721420	4894395	0	-	0.305263	(0.28,0.32]	chr11	458840	1	INTRON	INTRON	NUP98	ENSG00000110713.17	ENST00000359171.8:ENST00000324932.12:ENST00000650171.1:ENST00000355260.7:ENST00000397004.8:ENST00000397007.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	54	2	1.6633	3.4084399999999997	5.15358	0.0522231	0.0052282	0.177274	0.0633615
chr9	92272782	92272877	4287130	0	-	0.431579	(0.408,0.44]	chr9	394223	5	INTRON	INTRON	IARS1	ENSG00000196305.19	ENST00000375643.7:ENST00000443024.7:ENST00000447699.7:ENST00000683537.1:ENST00000684726.1:ENST00000683192.1:ENST00000683565.1:ENST00000682756.1:ENST00000684542.1:ENST00000683793.1:ENST00000683817.1:ENST00000682141.1:ENST00000682893.1:ENST00000684557.1:ENST00000498025.2:ENST00000682156.1:ENST00000627121.3:ENST00000683469.1:ENST00000683495.1:ENST00000682578.1:ENST00000682533.1:ENST00000472894.2:ENST00000684757.1:ENST00000684445.1:ENST00000683376.1:ENST00000683679.1:ENST00000683119.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	62	2	1.85866	3.4084149999999998	4.95817	0.0106944	0.00372419	0.091856	0.0535094
chr1	32792833	32792931	415914	0	-	0.295918	(0.28,0.32]	chr1	50188	12	INTRON	INTRON	YARS1	ENSG00000134684.13	ENST00000373477.9:ENST00000676297.1:ENST00000674654.1:ENST00000674629.1:ENST00000675785.2:ENST00000481895.6:ENST00000616261.2:ENST00000466052.1:ENST00000470377.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	34	2	2.67453	3.408335	4.14214	0.0579756	0.021289	0.167723	0.123318
chr1	113902385	113902461	526657	0	-	0.289474	(0.28,0.32]	chr1	62028	1	SS5_PROX	SS5_PROX:INTRON	AP4B1	ENSG00000134262.13	ENST00000369569.6:ENST00000256658.8:ENST00000369567.5:ENST00000484201.5:ENST00000369564.5:ENST00000489499.5:ENST00000432415.5:ENST00000489092.5:ENST00000369571.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	34	2	2.67453	3.408335	4.14214	0.0579756	0.021289	0.167723	0.123318
chr1	161789625	161789723	236085	0	+	0.295918	(0.28,0.32]	chr1	28540	52	INTRON	INTRON	ATF6	ENSG00000118217.7	ENST00000680688.1:ENST00000679853.1:ENST00000681738.1:ENST00000681801.1:ENST00000681779.1:ENST00000367942.4:ENST00000681001.1:ENST00000679886.1:ENST00000681169.1:ENST00000681492.1:ENST00000680481.1:ENST00000680180.1:ENST00000681187.1:ENST00000680462.1:ENST00000680633.1:ENST00000681557.1:ENST00000681912.1:ENST00000679833.1:ENST00000681541.1:ENST00000681036.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	34	2	2.67453	3.408335	4.14214	0.0579756	0.021289	0.167723	0.123318
chr12	116087371	116087471	5423640	0	-	0.29	(0.28,0.32]	chr12	518245	644	INTRON	INTRON	MED13L	ENSG00000123066.9	ENST00000281928.9:ENST00000650226.1:ENST00000648737.1:ENST00000548743.2:ENST00000647567.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	34	2	2.67453	3.408335	4.14214	0.0579756	0.021289	0.167723	0.123318
chr19	11106839	11106891	7016995	0	+	0.557692	(0.515,0.57]	chr19	697444	2	SS5_PROX	SS5_PROX:INTRON	LDLR	ENSG00000130164.14	ENST00000557933.5:ENST00000558518.6:ENST00000545707.5:ENST00000535915.5:ENST00000455727.6:ENST00000558013.5:ENST00000252444.9:ENST00000560467.1:ENST00000558528.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	202	2	3.19392	3.40824	3.62256	3.79831e-6	2.84e-6	0.00140425	0.00107692
chr11	3769816	3769911	4894889	0	-	0.463158	(0.44,0.476]	chr11	458896	7	INTRON	INTRON	NUP98	ENSG00000110713.17	ENST00000359171.8:ENST00000324932.12:ENST00000650171.1:ENST00000355260.7:ENST00000397004.8:ENST00000397007.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	39	2	1.85146	3.408185	4.96491	0.0545846	0.0034249	0.182529	0.0517761
chr12	111562645	111562744	5412865	0	-	0.444444	(0.44,0.476]	chr12	516939	64	INTRON	INTRON	ATXN2	ENSG00000204842.18	ENST00000642389.2:ENST00000608853.5:ENST00000672613.1:ENST00000673436.1:ENST00000643669.2:ENST00000616825.4:ENST00000389153.10:ENST00000550104.5:ENST00000483311.6:ENST00000672335.1:ENST00000673557.1:ENST00000673283.1:ENST00000673449.1:ENST00000535949.5:ENST00000542287.6:ENST00000644883.1:ENST00000647305.1:ENST00000671792.1:ENST00000392645.6:ENST00000672105.1:ENST00000549455.1:ENST00000548492.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	39	2	1.85146	3.408185	4.96491	0.0545846	0.0034249	0.182529	0.0517761
chr17	6938176	6938276	6717587	0	-	0.32	(0.28,0.32]	chr17	658651	101	INTRON	INTRON	ALOX12-AS1	ENSG00000215067.11	ENST00000653385.1:ENST00000659418.1:ENST00000572385.5:ENST00000570562.5:ENST00000575889.5	lncRNA	lncRNA	lncRNA	lncRNA	2	82	2	2.91851	3.4081349999999997	3.89776	0.0130672	2.03846e-4	0.093385	0.0124395
chr8	105328038	105328138	3837335	0	+	0.32	(0.28,0.32]	chr8	354033	79	INTRON	INTRON	ZFPM2	ENSG00000169946.14	ENST00000518180.1:ENST00000407775.7:ENST00000520492.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	45	2	2.08149	3.4081150000000004	4.73474	0.031124	0.0162835	0.143644	0.101453
chr2	71408424	71408513	807812	0	+	0.269663	[0,0.28]	chr2	90282	3	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	ZNF638	ENSG00000075292.19	ENST00000409544.5:ENST00000264447.9:ENST00000487638.5:ENST00000494241.5:ENST00000409407.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	72	2	1.92964	3.4079450000000002	4.88625	0.0173315	0.0157154	0.109464	0.104099
chrX	147943615	147943711	7729551	0	+	0.395833	(0.378,0.408]	chrX	790969	4	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	FMR1	ENSG00000102081.16	ENST00000370475.9:ENST00000440235.6:ENST00000218200.12:ENST00000370471.7:ENST00000370477.5:ENST00000439526.6:ENST00000687593.1:ENST00000691214.1:ENST00000692108.1:ENST00000691111.1:ENST00000685491.1:ENST00000691793.1:ENST00000492846.2:ENST00000689570.1:ENST00000495717.6:ENST00000616382.5:ENST00000621453.5:ENST00000693452.1:ENST00000690137.1:ENST00000689517.1:ENST00000690216.1:ENST00000693512.1:ENST00000686086.1:ENST00000692091.1:ENST00000475038.3:ENST00000621987.5:ENST00000370470.5:ENST00000693079.1:ENST00000620828.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	67	2	1.53546	3.407895	5.28033	0.0265688	0.00143651	0.134088	0.0340925
chr5	79238581	79238681	2397821	0	+	0.39	(0.378,0.408]	chr5	231607	5	INTRON	INTRON	JMY	ENSG00000152409.9	ENST00000396137.5	protein_coding	protein_coding	protein_coding	protein_coding	3	52	2	1.53052	3.407865	5.28521	0.0744544	4.52877e-4	0.192012	0.0192381
chr17	82467772	82467870	6692356	0	+	0.438776	(0.408,0.44]	chr17	654561	30	INTRON	INTRON	NARF	ENSG00000141562.19	ENST00000579198.5:ENST00000390006.8:ENST00000583181.5:ENST00000584192.5:ENST00000580296.5:ENST00000345415.11:ENST00000581202.5:ENST00000374611.9:ENST00000457415.7:ENST00000581795.5:ENST00000584411.5:ENST00000577812.5:ENST00000581743.5:ENST00000577432.5:ENST00000582907.5:ENST00000309794.16:ENST00000578082.5:ENST00000580748.1:ENST00000577410.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	13	343	2	3.35673	3.4077900000000003	3.45885	2.86412e-6	2.19293e-7	0.00119813	2.22455e-4
chr12	69598421	69598521	5165522	0	+	0.33	(0.32,0.35]	chr12	489276	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	CCT2	ENSG00000166226.13	ENST00000299300.11:ENST00000544368.6:ENST00000550010.5:ENST00000543146.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	43	2	2.19668	3.4077850000000005	4.61889	0.021398	0.0166646	0.123719	0.102621
chr16	47473366	47473466	6343422	0	+	0.34	(0.32,0.35]	chr16	608849	90	INTRON	INTRON	PHKB	ENSG00000102893.17	ENST00000566037.6:ENST00000566044.5:ENST00000299167.12:ENST00000696809.1:ENST00000323584.10:ENST00000565424.2:ENST00000567402.5:ENST00000563376.5:ENST00000564873.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	43	2	2.19668	3.4077850000000005	4.61889	0.021398	0.0166646	0.123719	0.102621
chr18	9569459	9569557	6945852	0	-	0.336735	(0.32,0.35]	chr18	686979	56	INTRON	INTRON	PPP4R1	ENSG00000154845.16	ENST00000400555.7:ENST00000400556.8:ENST00000285124.12:ENST00000578557.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	43	2	2.19668	3.4077850000000005	4.61889	0.021398	0.0166646	0.123719	0.102621
chr3	191439787	191439887	1590325	0	+	0.35	(0.32,0.35]	chr3	164637	138	INTRON	INTRON	ENSG00000223812	ENSG00000223812.8	ENST00000657540.1:ENST00000439804.6:ENST00000663647.1:ENST00000668751.1:ENST00000666632.1:ENST00000664732.1:ENST00000662007.1:ENST00000641158.1:ENST00000664994.1:ENST00000669884.1:ENST00000642133.1:ENST00000656380.1:ENST00000641055.1:ENST00000662578.1:ENST00000661668.1:ENST00000658347.1:ENST00000661029.1:ENST00000651548.2:ENST00000669360.1:ENST00000653490.1:ENST00000656942.1:ENST00000666456.1:ENST00000668276.1:ENST00000671595.1:ENST00000660290.1	lncRNA	lncRNA	lncRNA	lncRNA	2	43	2	2.19668	3.4077850000000005	4.61889	0.021398	0.0166646	0.123719	0.102621
chr11	46788380	46788480	4948164	0	-	0.52	(0.515,0.57]	chr11	463766	3	SS5_PROX	SS5_PROX:INTRON	CKAP5	ENSG00000175216.15	ENST00000529230.6:ENST00000312055.9:ENST00000354558.7	protein_coding	protein_coding	protein_coding	protein_coding	6	112	2	2.4519	3.407765	4.36363	5.82494e-4	1.01297e-5	0.0219289	0.00247779
chr1	226071350	226071414	327857	0	+	0.515625	(0.515,0.57]	chr1	37758	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	H3-3A	ENSG00000163041.13	ENST00000366816.5:ENST00000366815.10:ENST00000655399.1:ENST00000667897.1:ENST00000656829.1:ENST00000666609.1:ENST00000661429.1:ENST00000366813.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	28	2	2.12971	3.407695	4.68568	0.0757903	0.00270027	0.194427	0.0479115
chr12	76806613	76806710	5174279	0	+	0.536082	(0.515,0.57]	chr12	490087	8	INTRON	INTRON	ZDHHC17	ENSG00000186908.15	ENST00000546778.5:ENST00000426126.7:ENST00000552453.5:ENST00000547620.5:ENST00000550876.1:ENST00000547604.1:ENST00000551407.5:ENST00000550163.5:ENST00000549682.5:ENST00000549944.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	28	2	2.12971	3.407695	4.68568	0.0757903	0.00270027	0.194427	0.0479115
chr17	29457267	29457367	6586307	0	+	0.53	(0.515,0.57]	chr17	640386	52	INTRON	INTRON	TAOK1	ENSG00000160551.12	ENST00000261716.8:ENST00000583121.5:ENST00000536202.1	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	2.12971	3.407695	4.68568	0.0757903	0.00270027	0.194427	0.0479115
chr11	3792114	3792214	4895121	0	-	0.37	(0.35,0.378]	chr11	458931	96	INTRON	INTRON	NUP98	ENSG00000110713.17	ENST00000359171.8:ENST00000324932.12:ENST00000650171.1:ENST00000355260.7:ENST00000397004.8:ENST00000397007.8:ENST00000532475.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	41	2	2.17079	3.40768	4.64457	0.0225978	0.012652	0.124921	0.0926667
chr22	29963082	29963182	7498327	0	+	0.37	(0.35,0.378]	chr22	765027	56	INTRON	INTRON	MTMR3	ENSG00000100330.16	ENST00000333027.7:ENST00000401950.7:ENST00000495098.5:ENST00000445401.5:ENST00000323630.9:ENST00000351488.7:ENST00000415511.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	41	2	2.17079	3.40768	4.64457	0.0225978	0.012652	0.124921	0.0926667
chr5	12608476	12608576	2318919	0	+	0.37	(0.35,0.378]	chr5	224782	123	INTRON	INTRON	LINC01194	ENSG00000248131.6	ENST00000513051.6:ENST00000664069.1:ENST00000505196.1:ENST00000505877.5	lncRNA	lncRNA	lncRNA	lncRNA	2	41	2	2.17079	3.40768	4.64457	0.0225978	0.012652	0.124921	0.0926667
chr7	67084436	67084535	3327526	0	+	0.363636	(0.35,0.378]	chr7	309448	5	INTRON	INTRON	TYW1	ENSG00000198874.14	ENST00000359626.10:ENST00000361660.8:ENST00000495971.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	41	2	2.17079	3.40768	4.64457	0.0225978	0.012652	0.124921	0.0926667
chr6	36595894	36595985	2854427	0	+	0.417582	(0.408,0.44]	chr6	269770	8	INTRON	INTRON	SRSF3	ENSG00000112081.17	ENST00000613941.4:ENST00000373715.11:ENST00000620242.1:ENST00000339436.11:ENST00000477442.6:ENST00000620941.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	14	362	2	3.16878	3.4076750000000002	3.64657	3.48759e-6	1.30299e-6	0.00120947	7.42638e-4
chr1	1272137	1272208	359182	0	-	0.352113	(0.35,0.378]	chr1	41487	1	INTRON	INTRON	UBE2J2	ENSG00000160087.21	ENST00000450390.6:ENST00000349431.11:ENST00000347370.6:ENST00000400929.6:ENST00000464036.5:ENST00000360466.6:ENST00000400930.8:ENST00000473215.5:ENST00000435198.5:ENST00000509720.5:ENST00000491779.5:ENST00000466752.5:ENST00000503294.5:ENST00000477894.5:ENST00000422076.5:ENST00000502382.1:ENST00000461142.3:ENST00000488418.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	112	2	2.74807	3.4076199999999996	4.06717	8.09805e-4	1.16746e-4	0.0259453	0.00976708
chr12	28232291	28232391	5100690	0	+	0.31	(0.28,0.32]	chr12	481914	57	INTRON	INTRON	CCDC91	ENSG00000123106.11	ENST00000540794.5:ENST00000538586.5:ENST00000536154.5:ENST00000535520.5:ENST00000539107.5:ENST00000544649.5:ENST00000545336.5:ENST00000536442.6:ENST00000544780.5:ENST00000543534.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	54	2	1.71442	3.4075550000000003	5.10069	0.0454351	0.00610574	0.164236	0.0676501
chr2	222927813	222927908	1021901	0	+	0.305263	(0.28,0.32]	chr2	109333	7	EXON_MRNA	EXON_MRNA:INTRON	ACSL3	ENSG00000123983.15	ENST00000392066.7:ENST00000407441.5:ENST00000680251.1:ENST00000679541.1:ENST00000681906.1:ENST00000679545.1:ENST00000679932.1:ENST00000680100.1:ENST00000680475.1:ENST00000680525.1:ENST00000680420.1:ENST00000681326.1:ENST00000681292.1:ENST00000681017.1:ENST00000680395.1:ENST00000680736.1:ENST00000680147.1:ENST00000357430.8:ENST00000681009.1:ENST00000679514.1:ENST00000681697.1:ENST00000680921.1:ENST00000681383.1:ENST00000679558.1:ENST00000680684.1:ENST00000680424.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	54	2	1.71442	3.4075550000000003	5.10069	0.0454351	0.00610574	0.164236	0.0676501
chr20	62923745	62923845	7362427	0	-	0.31	(0.28,0.32]	chr20	751210	90	INTRON	INTRON	DIDO1	ENSG00000101191.17	ENST00000266070.8:ENST00000395343.6:ENST00000395340.5:ENST00000370371.8:ENST00000370368.5:ENST00000354665.8	protein_coding	protein_coding	protein_coding	protein_coding	3	54	2	1.61031	3.407455	5.2046	0.0600513	0.00448664	0.190658	0.0593175
chr4	126540916	126541016	2236118	0	-	0.21	[0,0.28]	chr4	219023	754	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	3	59	2	1.75741	3.407445	5.05748	0.0424454	0.0113653	0.161763	0.0886611
chr10	21588045	21588145	4404955	0	+	0.43	(0.408,0.44]	chr10	406459	13	INTRON	INTRON	MLLT10	ENSG00000078403.17	ENST00000651097.1:ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000650772.1:ENST00000651298.1:ENST00000495130.5:ENST00000377059.7:ENST00000476557.5:ENST00000462999.5:ENST00000430455.2:ENST00000479634.1:ENST00000480415.6:ENST00000652258.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	65	2	3.05705	3.4073	3.75755	0.00658331	2.62433e-4	0.0701901	0.0143317
chr10	50391492	50391592	4618360	0	-	0.37	(0.35,0.378]	chr10	425422	468	INTRON	INTRON	SGMS1	ENSG00000198964.14	ENST00000429490.5:ENST00000361781.7:ENST00000619438.4:ENST00000492601.2:ENST00000609445.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	41	2	1.82887	3.4072400000000003	4.98561	0.0584878	0.00474226	0.189395	0.0600445
chr3	160422162	160422257	1544841	0	+	0.357895	(0.35,0.378]	chr3	160739	9	INTRON	INTRON	SMC4	ENSG00000113810.16	ENST00000357388.8:ENST00000469762.5:ENST00000469858.5:ENST00000462787.5:ENST00000344722.5:ENST00000462668.5:ENST00000497203.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	41	2	1.82887	3.4072400000000003	4.98561	0.0584878	0.00474226	0.189395	0.0600445
chr7	23388399	23388499	3502840	0	-	0.35	(0.32,0.35]	chr7	326877	254	INTRON	INTRON	IGF2BP3	ENSG00000136231.14	ENST00000258729.8:ENST00000421467.6:ENST00000468263.5:ENST00000492771.5:ENST00000479504.5:ENST00000466809.6:ENST00000491719.5:ENST00000465058.5:ENST00000469723.5:ENST00000474105.5:ENST00000476938.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	99	2	3.20479	3.407235	3.60968	0.00105196	3.7902e-4	0.029592	0.0176313
chr1	42828920	42829019	84419	0	+	0.515152	(0.476,0.515]	chr1	11098	28	INTRON	INTRON	ERMAP	ENSG00000164010.15	ENST00000372517.8:ENST00000643061.1:ENST00000645239.1:ENST00000647120.1:ENST00000487556.6:ENST00000642150.1:ENST00000372514.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	31	2	2.48527	3.40721	4.32915	0.03496	0.0124637	0.13747500000000001	0.0973643
chr13	83102236	83102335	5634270	0	-	0.50505	(0.476,0.515]	chr13	536813	2	EXON_LNCRNA	EXON_LNCRNA	ENSG00000286385	ENSG00000286385.1	ENST00000663739.1	lncRNA	lncRNA	lncRNA	lncRNA	1	31	2	2.48527	3.40721	4.32915	0.03496	0.0124637	0.13747500000000001	0.0973643
chr16	4342617	4342706	6436582	0	-	0.494382	(0.476,0.515]	chr16	619670	6	INTRON	INTRON	PAM16	ENSG00000217930.8	ENST00000577031.5:ENST00000573236.5:ENST00000576217.1:ENST00000318059.8:ENST00000571986.5:ENST00000573614.5:ENST00000575636.5:ENST00000571941.5:ENST00000575848.5:ENST00000573553.5:ENST00000573450.5:ENST00000571178.1:ENST00000571819.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	31	2	2.48527	3.40721	4.32915	0.03496	0.0124637	0.13747500000000001	0.0973643
chr16	8853907	8854003	6441826	0	-	0.479167	(0.476,0.515]	chr16	620374	11	UTR3	UTR3:EXON_MRNA	CARHSP1	ENSG00000153048.11	ENST00000396593.6:ENST00000611932.4:ENST00000618335.4:ENST00000619881.4:ENST00000610831.4:ENST00000614449.4:ENST00000311052.10	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	2.48527	3.40721	4.32915	0.03496	0.0124637	0.13747500000000001	0.0973643
chr17	47678507	47678601	6622894	0	+	0.5	(0.476,0.515]	chr17	646108	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	KPNB1	ENSG00000108424.11	ENST00000535458.6:ENST00000583648.6:ENST00000290158.9:ENST00000540627.5:ENST00000582097.5:ENST00000677341.1:ENST00000580573.2:ENST00000580158.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	31	2	2.48527	3.40721	4.32915	0.03496	0.0124637	0.13747500000000001	0.0973643
chr19	3441266	3441365	7000381	0	+	0.575758	(0.57,1]	chr19	694202	57	INTRON	INTRON	NFIC	ENSG00000141905.19	ENST00000641145.1:ENST00000589123.5:ENST00000395111.7:ENST00000586919.5:ENST00000341919.7:ENST00000443272.3:ENST00000590282.5:ENST00000589537.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	47	2	3.04906	3.40721	3.76536	4.97245e-4	1.35835e-4	0.0206993	0.0100405
chr2	113596829	113596929	854214	0	+	0.48	(0.476,0.515]	chr2	95875	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	WASH2P	ENSG00000146556.15	ENST00000686495.1:ENST00000692602.1:ENST00000688542.1:ENST00000685302.1:ENST00000685435.1:ENST00000685518.1:ENST00000691953.1:ENST00000453662.6:ENST00000538033.2	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript:transcribed_unprocessed_pseudogene	1	31	2	2.48527	3.40721	4.32915	0.03496	0.0124637	0.13747500000000001	0.0973643
chr21	43898969	43899068	7414128	0	+	0.484848	(0.476,0.515]	chr21	755692	160	INTRON	INTRON	AGPAT3	ENSG00000160216.21	ENST00000291572.13:ENST00000448287.5:ENST00000398061.5	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	2.48527	3.40721	4.32915	0.03496	0.0124637	0.13747500000000001	0.0973643
chr5	126822095	126822187	2479636	0	+	0.5	(0.476,0.515]	chr5	236745	6	INTRON	INTRON	LMNB1	ENSG00000113368.12	ENST00000460265.5:ENST00000261366.10:ENST00000504788.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	31	2	2.48527	3.40721	4.32915	0.03496	0.0124637	0.13747500000000001	0.0973643
chr6	20880259	20880359	2831849	0	+	0.48	(0.476,0.515]	chr6	265679	337	INTRON	INTRON	CDKAL1	ENSG00000145996.11	ENST00000274695.8:ENST00000378610.1	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	2.48527	3.40721	4.32915	0.03496	0.0124637	0.13747500000000001	0.0973643
chr7	23368658	23368758	3502642	0	-	0.53	(0.515,0.57]	chr7	326877	56	INTRON	INTRON	IGF2BP3	ENSG00000136231.14	ENST00000258729.8:ENST00000421467.6:ENST00000468263.5:ENST00000492771.5:ENST00000479504.5:ENST00000466809.6:ENST00000491719.5:ENST00000465058.5:ENST00000469723.5:ENST00000474105.5:ENST00000476938.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	90	2	2.57697	3.407195	4.23742	0.00153959	2.14737e-5	0.0362709	0.00377331
chr11	87261764	87261863	4845055	0	+	0.464646	(0.44,0.476]	chr11	451868	247	INTRON	INTRON	TMEM135	ENSG00000166575.17	ENST00000340353.11:ENST00000305494.6:ENST00000532959.5:ENST00000525018.5	protein_coding	protein_coding	protein_coding	protein_coding	3	86	2	2.78046	3.4071550000000004	4.03385	0.0028389	6.14604e-5	0.0473151	0.0064891
chr7	73695047	73695144	3331691	0	+	0.463918	(0.44,0.476]	chr7	309907	7	EXON_MRNA	EXON_MRNA:INTRON	BUD23	ENSG00000071462.12	ENST00000421744.5:ENST00000265758.7:ENST00000436944.5:ENST00000463307.5:ENST00000423497.5:ENST00000430270.5:ENST00000430446.2:ENST00000442099.1:ENST00000453316.1:ENST00000471215.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	142	2	2.29969	3.40715	4.51461	8.95839e-4	7.55571e-6	0.0273866	0.00206677
chr14	69397730	69397830	5916301	0	-	0.52	(0.515,0.57]	chr14	562070	1	SS5_PROX	SS5_PROX:INTRON	ERH	ENSG00000100632.11	ENST00000557016.6:ENST00000216520.6:ENST00000555373.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	28	2	2.52504	3.4071249999999997	4.28921	0.029342	0.00990051	0.128055	0.0877296
chr17	57308932	57309032	6633277	0	+	0.52	(0.515,0.57]	chr17	648017	138	INTRON	INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000581776.5:ENST00000674961.1:ENST00000582453.5:ENST00000675656.1:ENST00000322684.7:ENST00000579590.5:ENST00000676073.1:ENST00000675822.1:ENST00000442934.6:ENST00000579180.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	28	2	2.52504	3.4071249999999997	4.28921	0.029342	0.00990051	0.128055	0.0877296
chr19	2183854	2183954	6996369	0	+	0.56	(0.515,0.57]	chr19	693423	27	INTRON	INTRON	DOT1L	ENSG00000104885.19	ENST00000398665.8:ENST00000686010.1:ENST00000452696.5:ENST00000478937.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	28	2	2.52504	3.4071249999999997	4.28921	0.029342	0.00990051	0.128055	0.0877296
chr5	308196	308295	2312989	0	+	0.535354	(0.515,0.57]	chr5	223726	1	EXON_MRNA	EXON_MRNA:INTRON	PDCD6	ENSG00000249915.9	ENST00000614778.4:ENST00000618970.4:ENST00000513582.5:ENST00000264933.9:ENST00000505221.5:ENST00000507528.5:ENST00000505526.1:ENST00000507473.1:ENST00000511482.1:ENST00000512466.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	28	2	2.52504	3.4071249999999997	4.28921	0.029342	0.00990051	0.128055	0.0877296
chr6	154406952	154407052	3250042	0	-	0.52	(0.515,0.57]	chr6	302002	3	SS3_PROX	SS3_PROX:INTRON	CNKSR3	ENSG00000153721.19	ENST00000607772.6:ENST00000433165.6:ENST00000479339.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	28	2	2.52504	3.4071249999999997	4.28921	0.029342	0.00990051	0.128055	0.0877296
chr12	50545618	50545718	5137556	0	+	0.39	(0.378,0.408]	chr12	484468	400	INTRON	INTRON	DIP2B	ENSG00000066084.13	ENST00000301180.10:ENST00000549620.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	67	2	1.37524	3.40708	5.43892	0.0610755	2.28412e-4	0.172411	0.0133228
chr14	96542391	96542486	5810587	0	+	0.336842	(0.32,0.35]	chr14	550941	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PAPOLA	ENSG00000090060.19	ENST00000216277.13:ENST00000553689.5:ENST00000392990.6:ENST00000555626.5:ENST00000554666.5:ENST00000556787.5:ENST00000555701.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	74	2	3.31533	3.4070099999999996	3.49869	0.00323121	0.00108004	0.0507087	0.0300133
chr18	36143066	36143166	6891562	0	+	0.41	(0.408,0.44]	chr18	683006	1	SS5_PROX	SS5_PROX:INTRON	ELP2	ENSG00000134759.14	ENST00000351393.10:ENST00000442325.6:ENST00000358232.11:ENST00000423854.6:ENST00000539560.5:ENST00000350494.10:ENST00000542824.5:ENST00000540799.1:ENST00000536373.5:ENST00000535093.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	88	2	2.57295	3.4069900000000004	4.24103	0.00640423	1.8653e-5	0.0694534	0.00329969
chr21	29045181	29045280	7390180	0	+	0.424242	(0.408,0.44]	chr21	753021	12	INTRON	INTRON	USP16	ENSG00000156256.15	ENST00000399975.7:ENST00000334352.8:ENST00000474835.5:ENST00000399976.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	65	2	3.36378	3.406985	3.45019	0.0016048	0.00152664	0.0367961	0.0353936
chr13	114243062	114243156	5550502	0	+	0.468085	(0.44,0.476]	chr13	530463	4	SS3_PROX	SS3_PROX:INTRON	CDC16	ENSG00000130177.16	ENST00000360383.7:ENST00000628084.2:ENST00000356221.8:ENST00000650489.1:ENST00000375310.5:ENST00000252457.9:ENST00000375308.5:ENST00000252458.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	86	2	3.34209	3.406945	3.4718	0.00136358	1.47653e-4	0.0336321	0.0105526
chr1	25905402	25905489	404621	0	-	0.494253	(0.476,0.515]	chr1	48566	4	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	STMN1	ENSG00000117632.23	ENST00000426559.6:ENST00000455785.7:ENST00000399728.5:ENST00000465604.1:ENST00000357865.6:ENST00000446334.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	29	2	2.56868	3.4068449999999997	4.24501	0.0256676	0.0247713	0.133676	0.12011
chr1	147487949	147488049	544665	0	-	0.51	(0.476,0.515]	chr1	63635	789	INTRON	INTRON	LINC00624	ENSG00000278811.4	ENST00000619867.4:ENST00000621316.1	lncRNA	lncRNA	lncRNA	lncRNA	1	29	2	2.56868	3.4068449999999997	4.24501	0.0256676	0.0247713	0.133676	0.12011
chr1	211819266	211819366	631293	0	-	0.48	(0.476,0.515]	chr1	74654	257	INTRON	INTRON	LPGAT1	ENSG00000123684.13	ENST00000366997.9:ENST00000366996.1	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	2.56868	3.4068449999999997	4.24501	0.0256676	0.0247713	0.133676	0.12011
chr17	17231006	17231101	6736010	0	-	0.484211	(0.476,0.515]	chr17	660923	17	INTRON	INTRON	FLCN	ENSG00000154803.13	ENST00000285071.9:ENST00000389169.9:ENST00000417064.1:ENST00000389171.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	29	2	2.56868	3.4068449999999997	4.24501	0.0256676	0.0247713	0.133676	0.12011
chr17	49646458	49646544	6793179	0	-	0.511628	(0.476,0.515]	chr17	670303	5	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	SPOP	ENSG00000121067.19	ENST00000393328.6:ENST00000504102.6:ENST00000347630.6:ENST00000665825.1:ENST00000514121.6:ENST00000659760.1:ENST00000509079.6:ENST00000671445.1:ENST00000513080.6:ENST00000503676.5:ENST00000505581.5:ENST00000506399.5:ENST00000507970.5:ENST00000515508.6:ENST00000504212.5:ENST00000510476.5:ENST00000508805.5:ENST00000451526.6:ENST00000502385.1:ENST00000509765.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	29	2	2.56868	3.4068449999999997	4.24501	0.0256676	0.0247713	0.133676	0.12011
chr21	15744716	15744816	7370242	0	+	0.48	(0.476,0.515]	chr21	752186	139	INTRON	INTRON	USP25	ENSG00000155313.16	ENST00000400183.7:ENST00000285681.6:ENST00000285679.10:ENST00000351097.9	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	2.56868	3.4068449999999997	4.24501	0.0256676	0.0247713	0.133676	0.12011
chr5	98878353	98878453	2683536	0	-	0.5	(0.476,0.515]	chr5	253840	14	INTRON	INTRON	CHD1	ENSG00000153922.11	ENST00000614616.5:ENST00000284049.7	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	2.56868	3.4068449999999997	4.24501	0.0256676	0.0247713	0.133676	0.12011
chr5	138210131	138210230	2731691	0	-	0.50505	(0.476,0.515]	chr5	257262	31	INTRON	INTRON	CDC23	ENSG00000094880.11	ENST00000394886.7:ENST00000482948.5:ENST00000483961.6:ENST00000511383.5:ENST00000394884.7:ENST00000505120.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	29	2	2.56868	3.4068449999999997	4.24501	0.0256676	0.0247713	0.133676	0.12011
chr6	31966360	31966436	2843986	0	+	0.5	(0.476,0.515]	chr6	267986	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SKIV2L	ENSG00000204351.12	ENST00000465703.5:ENST00000474839.5:ENST00000375394.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	29	2	2.56868	3.4068449999999997	4.24501	0.0256676	0.0247713	0.133676	0.12011
chr7	5416170	5416270	3472007	0	-	0.51	(0.476,0.515]	chr7	324678	89	INTRON	INTRON	TNRC18	ENSG00000182095.15	ENST00000399537.8:ENST00000430969.6:ENST00000399434.2	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	2.56868	3.4068449999999997	4.24501	0.0256676	0.0247713	0.133676	0.12011
chr3	47843851	47843947	1420392	0	+	0.40625	(0.378,0.408]	chr3	149252	2	INTRON	INTRON	DHX30	ENSG00000132153.15	ENST00000395745.6:ENST00000445061.6:ENST00000348968.8:ENST00000446256.6:ENST00000619982.4:ENST00000457607.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	52	2	1.58349	3.4068	5.23011	0.0653091	5.72873e-4	0.180158	0.0217398
chr2	61364341	61364441	1129479	0	-	0.38	(0.378,0.408]	chr2	121448	133	INTRON	INTRON	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000453133.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	144	2	3.28937	3.4067499999999997	3.52413	3.2389e-4	8.58502e-6	0.0165891	0.00210871
chr10	124398502	124398602	4710619	0	-	0.36	(0.35,0.378]	chr10	434681	4	SS3_PROX	SS3_PROX:INTRON	OAT	ENSG00000065154.12	ENST00000539214.5:ENST00000368845.6:ENST00000471127.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	31	2	2.72498	3.4065700000000003	4.08816	0.046021	0.0168499	0.149888	0.11068
chr5	180551603	180551701	2562438	0	+	0.357143	(0.35,0.378]	chr5	245096	11	INTRON	INTRON	CNOT6	ENSG00000113300.13	ENST00000261951.9:ENST00000393356.7:ENST00000618123.4:ENST00000502447.1:ENST00000504343.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	31	2	2.72498	3.4065700000000003	4.08816	0.046021	0.0168499	0.149888	0.11068
chr4	98880540	98880637	2208022	0	-	0.329897	(0.32,0.35]	chr4	216131	14	UTR3	UTR3:EXON_MRNA	EIF4E	ENSG00000151247.13	ENST00000450253.7	protein_coding	protein_coding	protein_coding	protein_coding	4	59	2	1.68188	3.406555	5.13123	0.031521	0.00394704	0.144381	0.0548259
chr1	77661414	77661513	493251	0	-	0.323232	(0.32,0.35]	chr1	58315	194	INTRON	INTRON	ZZZ3	ENSG00000036549.13	ENST00000370801.8:ENST00000370798.5:ENST00000433749.5:ENST00000414381.5:ENST00000463166.5:ENST00000469944.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	32	2	2.64129	3.40655	4.17181	0.04531	0.0222819	0.149888	0.124303
chr1	100111676	100111776	515645	0	-	0.35	(0.32,0.35]	chr1	60466	8	INTRON	INTRON	SASS6	ENSG00000156876.10	ENST00000462159.1:ENST00000287482.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	32	2	2.64129	3.40655	4.17181	0.04531	0.0222819	0.149888	0.124303
chr10	74315544	74315644	4457415	0	+	0.34	(0.32,0.35]	chr10	411559	4	INTRON	INTRON	ADK	ENSG00000156110.15	ENST00000672429.1:ENST00000539909.6:ENST00000286621.7:ENST00000673352.1:ENST00000673310.1:ENST00000672920.1:ENST00000672394.1:ENST00000372734.5:ENST00000673027.1:ENST00000541550.6:ENST00000672604.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	32	2	2.64129	3.40655	4.17181	0.04531	0.0222819	0.149888	0.124303
chr15	58024340	58024440	6187126	0	-	0.33	(0.32,0.35]	chr15	589778	97	INTRON	INTRON	ALDH1A2	ENSG00000128918.15	ENST00000537372.5:ENST00000249750.9:ENST00000347587.7:ENST00000430119.6:ENST00000558231.5:ENST00000559266.5:ENST00000561070.5:ENST00000558595.5:ENST00000558239.5:ENST00000557967.5:ENST00000558073.5:ENST00000559297.5:ENST00000560122.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	32	2	2.64129	3.40655	4.17181	0.04531	0.0222819	0.149888	0.124303
chr15	92988459	92988559	6104610	0	+	0.34	(0.32,0.35]	chr15	581558	24	INTRON	INTRON	CHD2	ENSG00000173575.22	ENST00000626874.2:ENST00000394196.9:ENST00000635856.1:ENST00000637572.1:ENST00000636881.1:ENST00000636306.1:ENST00000637789.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	32	2	2.64129	3.40655	4.17181	0.04531	0.0222819	0.149888	0.124303
chr16	16058269	16058369	6308857	0	+	0.35	(0.32,0.35]	chr16	603578	8	INTRON	INTRON	ABCC1	ENSG00000103222.20	ENST00000678422.1:ENST00000677164.1:ENST00000399408.7:ENST00000572882.3:ENST00000399410.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	32	2	2.64129	3.40655	4.17181	0.04531	0.0222819	0.149888	0.124303
chr16	68103894	68103994	6370409	0	+	0.35	(0.32,0.35]	chr16	612188	143	INTRON	INTRON	ENSG00000261864:NFATC3	ENSG00000261864.1:ENSG00000072736.19	ENST00000548144.1:ENST00000563319.5:ENST00000569766.5:ENST00000553077.5:ENST00000566301.5:ENST00000549350.5:ENST00000566893.5:ENST00000575270.5:ENST00000561714.5:ENST00000346183.8:ENST00000568466.6:ENST00000539828.6:ENST00000562171.1:ENST00000349223.9:ENST00000329524.8:ENST00000379165.8:ENST00000562926.5:ENST00000570212.5:ENST00000563796.5:ENST00000567152.5:ENST00000563288.5:ENST00000535127.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA:processed_transcript	1	32	2	2.64129	3.40655	4.17181	0.04531	0.0222819	0.149888	0.124303
chr16	89436418	89436518	6543060	0	-	0.35	(0.32,0.35]	chr16	634281	47	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	32	2	2.64129	3.40655	4.17181	0.04531	0.0222819	0.149888	0.124303
chr17	39395567	39395667	6766592	0	-	0.34	(0.32,0.35]	chr17	665497	520	INTRON	INTRON	FBXL20	ENSG00000108306.13	ENST00000264658.11:ENST00000583610.5:ENST00000394294.7:ENST00000577399.5:ENST00000647139.1	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	2.64129	3.40655	4.17181	0.04531	0.0222819	0.149888	0.124303
chr19	17234209	17234308	7151115	0	-	0.333333	(0.32,0.35]	chr19	722556	12	INTRON	INTRON	NR2F6	ENSG00000160113.6	ENST00000291442.4	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	2.64129	3.40655	4.17181	0.04531	0.0222819	0.149888	0.124303
chr4	118614429	118614527	2024972	0	+	0.336735	(0.32,0.35]	chr4	201331	51	INTRON	INTRON	ENSG00000260404	ENSG00000260404.4	ENST00000567913.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	1	32	2	2.64129	3.40655	4.17181	0.04531	0.0222819	0.149888	0.124303
chr4	143546365	143546456	2055830	0	+	0.32967	(0.32,0.35]	chr4	203923	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SMARCA5	ENSG00000153147.6	ENST00000283131.4	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	2.64129	3.40655	4.17181	0.04531	0.0222819	0.149888	0.124303
chr4	150298726	150298826	2264536	0	-	0.33	(0.32,0.35]	chr4	220597	123	INTRON	INTRON	LRBA	ENSG00000198589.14	ENST00000357115.9:ENST00000651943.2:ENST00000510413.5:ENST00000503716.5:ENST00000515096.5:ENST00000509835.5:ENST00000648823.1:ENST00000648626.1:ENST00000651695.1:ENST00000648878.1:ENST00000651035.1:ENST00000510157.1:ENST00000508606.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	32	2	2.64129	3.40655	4.17181	0.04531	0.0222819	0.149888	0.124303
chr6	135025157	135025257	3225170	0	-	0.35	(0.32,0.35]	chr6	299837	220	INTRON	INTRON	HBS1L	ENSG00000112339.15	ENST00000367837.10:ENST00000527578.5:ENST00000415177.6:ENST00000367826.6:ENST00000533274.5:ENST00000526100.5:ENST00000529641.5:ENST00000527507.1:ENST00000314674.7:ENST00000524715.5:ENST00000529882.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	32	2	2.64129	3.40655	4.17181	0.04531	0.0222819	0.149888	0.124303
chr9	88418377	88418477	4152349	0	+	0.34	(0.32,0.35]	chr9	378734	2	SS3_PROX	SS3_PROX:INTRON	SPIN1	ENSG00000106723.17	ENST00000485804.5:ENST00000469017.6:ENST00000375859.4:ENST00000462844.5:ENST00000485565.6:ENST00000483785.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	32	2	2.64129	3.40655	4.17181	0.04531	0.0222819	0.149888	0.124303
chr19	19459114	19459213	7035884	0	+	0.373737	(0.35,0.378]	chr19	701456	1	INTRON	INTRON	GATAD2A	ENSG00000167491.18	ENST00000494516.6:ENST00000360315.7:ENST00000609040.5:ENST00000417582.6:ENST00000683918.1:ENST00000432704.5:ENST00000404158.5:ENST00000429242.7:ENST00000358713.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	45	2	1.98929	3.40653	4.82377	0.0417909	0.00325499	0.147075	0.0524329
chr13	114318422	114318521	5551117	0	+	0.515152	(0.476,0.515]	chr13	530596	34	INTRON	INTRON	CHAMP1	ENSG00000198824.7	ENST00000646956.1:ENST00000463003.2:ENST00000645174.1:ENST00000361283.4:ENST00000646155.1:ENST00000478022.3:ENST00000644294.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	29	2	2.28264	3.406435	4.53023	0.0534132	0.0119748	0.179876	0.0899583
chr15	63624527	63624627	6198711	0	-	0.51	(0.476,0.515]	chr15	591027	2	SS3_PROX	SS3_PROX:INTRON	HERC1	ENSG00000103657.14	ENST00000443617.7:ENST00000558324.1:ENST00000561348.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	29	2	2.28264	3.406435	4.53023	0.0534132	0.0119748	0.179876	0.0899583
chr16	47581843	47581942	6344517	0	+	0.494949	(0.476,0.515]	chr16	608903	11	INTRON	INTRON	PHKB	ENSG00000102893.17	ENST00000566044.5:ENST00000299167.12:ENST00000696809.1:ENST00000323584.10:ENST00000567402.5:ENST00000570047.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	29	2	2.28264	3.406435	4.53023	0.0534132	0.0119748	0.179876	0.0899583
chr16	84987963	84988063	6533932	0	-	0.51	(0.476,0.515]	chr16	633131	56	INTRON	INTRON	ZDHHC7	ENSG00000153786.13	ENST00000313732.9:ENST00000344861.9:ENST00000564466.5:ENST00000569488.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	29	2	2.28264	3.406435	4.53023	0.0534132	0.0119748	0.179876	0.0899583
chr19	14536264	14536364	7024995	0	+	0.51	(0.476,0.515]	chr19	698970	2	SS3_PROX	SS3_PROX:INTRON	TECR	ENSG00000099797.15	ENST00000600076.5:ENST00000598298.5:ENST00000642961.1:ENST00000215567.10:ENST00000600083.5:ENST00000598987.5:ENST00000601652.5:ENST00000593637.5:ENST00000594807.5:ENST00000598333.5:ENST00000596953.5:ENST00000597607.5:ENST00000596164.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	29	2	2.28264	3.406435	4.53023	0.0534132	0.0119748	0.179876	0.0899583
chr21	37223999	37224096	7461930	0	-	0.494845	(0.476,0.515]	chr21	760203	7	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	VPS26C	ENSG00000157538.14	ENST00000399000.7:ENST00000497493.1:ENST00000309117.11	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	29	2	2.28264	3.406435	4.53023	0.0534132	0.0119748	0.179876	0.0899583
chr9	110247134	110247233	4313903	0	-	0.494949	(0.476,0.515]	chr9	396564	19	INTRON	INTRON	TXN	ENSG00000136810.13	ENST00000374517.6:ENST00000374515.9	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	2.28264	3.406435	4.53023	0.0534132	0.0119748	0.179876	0.0899583
chrX	154767822	154767876	7739337	0	+	0.203704	[0,0.28]	chrX	792406	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DKC1	ENSG00000130826.19	ENST00000620277.4:ENST00000413910.6:ENST00000426673.6:ENST00000696575.1:ENST00000369550.10:ENST00000696579.1:ENST00000696578.1:ENST00000696577.1:ENST00000696576.1:ENST00000696580.1:ENST00000696581.1:ENST00000696582.1:ENST00000696583.1:ENST00000696627.1:ENST00000696628.1:ENST00000696584.1:ENST00000696585.1:ENST00000696586.1:ENST00000696587.1:ENST00000696588.1:ENST00000437719.5:ENST00000412124.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	92	2	3.33854	3.406385	3.47423	0.00278022	0.00268371	0.0488412	0.0464781
chr1	179166075	179166175	592443	0	-	0.43	(0.408,0.44]	chr1	71074	231	INTRON	INTRON	ABL2	ENSG00000143322.21	ENST00000502732.6:ENST00000367623.8:ENST00000507173.5:ENST00000511413.5:ENST00000668691.1:ENST00000392043.4:ENST00000660584.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	29	2	2.58179	3.4063749999999997	4.23096	0.0278028	0.024638	0.131869	0.123904
chr10	63211696	63211794	4632837	0	-	0.428571	(0.408,0.44]	chr10	426189	21	INTRON	INTRON	JMJD1C	ENSG00000171988.20	ENST00000399262.7:ENST00000402544.5:ENST00000542921.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	29	2	2.58179	3.4063749999999997	4.23096	0.0278028	0.024638	0.131869	0.123904
chr12	103797131	103797231	5401364	0	-	0.44	(0.408,0.44]	chr12	515256	1	SS3_PROX	SS3_PROX:INTRON	NT5DC3	ENSG00000111696.12	ENST00000392876.8:ENST00000465502.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	29	2	2.58179	3.4063749999999997	4.23096	0.0278028	0.024638	0.131869	0.123904
chr17	70118570	70118670	6828634	0	-	0.44	(0.408,0.44]	chr17	675009	454	INTRON	INTRON	ENSG00000230258	ENSG00000230258.6	ENST00000435112.5	lncRNA	lncRNA	lncRNA	lncRNA	1	29	2	2.58179	3.4063749999999997	4.23096	0.0278028	0.024638	0.131869	0.123904
chr3	57595977	57596076	1706276	0	-	0.424242	(0.408,0.44]	chr3	175950	112	INTRON	INTRON	ARF4	ENSG00000168374.11	ENST00000303436.11:ENST00000496292.5:ENST00000489843.1:ENST00000486310.5:ENST00000483848.5:ENST00000463880.1:ENST00000493378.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	29	2	2.58179	3.4063749999999997	4.23096	0.0278028	0.024638	0.131869	0.123904
chr6	111008337	111008437	2939568	0	+	0.43	(0.408,0.44]	chr6	276876	2	SS5_PROX	SS5_PROX:INTRON	RPF2	ENSG00000197498.13	ENST00000368864.8:ENST00000441448.7:ENST00000607388.1:ENST00000425871.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	29	2	2.58179	3.4063749999999997	4.23096	0.0278028	0.024638	0.131869	0.123904
chr8	99225890	99225990	3813406	0	+	0.41	(0.408,0.44]	chr8	353170	325	INTRON	INTRON	VPS13B	ENSG00000132549.20	ENST00000496144.5:ENST00000683334.1:ENST00000357162.7:ENST00000358544.7:ENST00000683619.1:ENST00000683869.1:ENST00000682153.1:ENST00000682358.1:ENST00000682145.1:ENST00000355155.6:ENST00000682234.1:ENST00000683486.1:ENST00000684308.1:ENST00000521932.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	29	2	2.58179	3.4063749999999997	4.23096	0.0278028	0.024638	0.131869	0.123904
chr6	157908283	157908381	3016621	0	+	0.377551	(0.35,0.378]	chr6	281403	22	EXON_MRNA	EXON_MRNA:INTRON	SNX9	ENSG00000130340.17	ENST00000680863.1:ENST00000679814.1:ENST00000680464.1:ENST00000681186.1:ENST00000679732.1:ENST00000681183.1:ENST00000681534.1:ENST00000681651.1:ENST00000680089.1:ENST00000680078.1:ENST00000680974.1:ENST00000680095.1:ENST00000680015.1:ENST00000681138.1:ENST00000392185.8:ENST00000679790.1:ENST00000680495.1:ENST00000679691.1:ENST00000681881.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	49	2	1.71046	3.4063600000000003	5.10226	0.0441269	0.00327038	0.162255	0.0508595
chr16	88661721	88661816	6539315	0	-	0.515789	(0.515,0.57]	chr16	633758	5	INTRON	INTRON	MVD	ENSG00000167508.12	ENST00000301012.8:ENST00000569177.5:ENST00000567064.5:ENST00000568133.5:ENST00000563785.5:ENST00000568709.5:ENST00000563170.5:ENST00000565610.5:ENST00000563463.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	27	570	2	3.23204	3.40619	3.58034	2.24723e-8	1.87101e-8	5.00095e-5	4.97375e-5
chr17	35065502	35065601	6757726	0	-	0.383838	(0.378,0.408]	chr17	664142	19	INTRON	INTRON	RFFL	ENSG00000092871.17	ENST00000315249.11:ENST00000584655.5:ENST00000447669.6:ENST00000584541.1:ENST00000414419.6:ENST00000581265.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	32	2	2.38873	3.40611	4.42349	0.0458857	0.00992961	0.149888	0.0877296
chr7	139080243	139080343	3656123	0	-	0.38	(0.378,0.408]	chr7	339435	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	ZC3HAV1	ENSG00000105939.14	ENST00000242351.10:ENST00000464606.5:ENST00000680309.1:ENST00000471652.1	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	2.38873	3.40611	4.42349	0.0458857	0.00992961	0.149888	0.0877296
chr10	131902127	131902227	4536875	0	+	0.33	(0.32,0.35]	chr10	418858	4	INTRON	INTRON	PPP2R2D	ENSG00000175470.20	ENST00000455566.6:ENST00000616467.4:ENST00000482010.6:ENST00000470416.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	44	2	2.35591	3.4061000000000003	4.45629	0.0246089	0.0128129	0.12011	0.0990564
chr7	50789757	50789856	3532652	0	-	0.333333	(0.32,0.35]	chr7	329547	70	INTRON	INTRON	GRB10	ENSG00000106070.20	ENST00000335866.7:ENST00000644769.1:ENST00000644879.1:ENST00000402497.6:ENST00000645075.2:ENST00000439044.7:ENST00000644716.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	44	2	2.35591	3.4061000000000003	4.45629	0.0246089	0.0128129	0.12011	0.0990564
chr1	109396016	109396115	521003	0	-	0.434343	(0.408,0.44]	chr1	61205	28	INTRON	INTRON	SORT1	ENSG00000134243.12	ENST00000256637.8:ENST00000471996.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	39	2	2.21238	3.406085	4.59979	0.0193525	0.0109537	0.119831	0.0873034
chr10	73376517	73376617	4649027	0	-	0.42	(0.408,0.44]	chr10	427732	3	SS3_PROX	SS3_PROX:INTRON	ANXA7	ENSG00000138279.16	ENST00000372921.10:ENST00000372919.8:ENST00000463788.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	39	2	2.21238	3.406085	4.59979	0.0193525	0.0109537	0.119831	0.0873034
chr15	68099680	68099780	6056410	0	+	0.41	(0.408,0.44]	chr15	576567	114	INTRON	INTRON	PIAS1	ENSG00000033800.14	ENST00000564915.5:ENST00000249636.11:ENST00000562190.1:ENST00000545237.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	39	2	2.21238	3.406085	4.59979	0.0193525	0.0109537	0.119831	0.0873034
chr6	35013080	35013180	2850521	0	+	0.44	(0.408,0.44]	chr6	269278	183	INTRON	INTRON	ANKS1A	ENSG00000064999.15	ENST00000360359.5:ENST00000649117.1	protein_coding	protein_coding	protein_coding	protein_coding	2	39	2	2.21238	3.406085	4.59979	0.0193525	0.0109537	0.119831	0.0873034
chr1	6530369	6530469	367873	0	-	0.49	(0.476,0.515]	chr1	43195	8	INTRON	INTRON	NOL9	ENSG00000162408.11	ENST00000377705.6	protein_coding	protein_coding	protein_coding	protein_coding	2	39	2	2.19809	3.4060550000000003	4.61402	0.020317	0.00947755	0.121522	0.0817766
chr2	208337717	208337814	992751	0	+	0.505155	(0.476,0.515]	chr2	106752	4	INTRON	INTRON	PIKFYVE	ENSG00000115020.17	ENST00000264380.9	protein_coding	protein_coding	protein_coding	protein_coding	2	39	2	2.19809	3.4060550000000003	4.61402	0.020317	0.00947755	0.121522	0.0817766
chr11	10802830	10802929	4915228	0	-	0.40404	(0.378,0.408]	chr11	460563	4	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	EIF4G2	ENSG00000110321.19	ENST00000526148.6:ENST00000525681.6:ENST00000339995.11:ENST00000532383.5:ENST00000396525.7:ENST00000531416.6:ENST00000531647.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	175	2	3.29791	3.40595	3.51399	3.60429e-5	2.04125e-5	0.00481059	0.00366937
chr10	86479157	86479257	4658936	0	-	0.42	(0.408,0.44]	chr10	429282	48	INTRON	INTRON	WAPL	ENSG00000062650.20	ENST00000298767.10	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	2.2957	3.40587	4.51604	0.0516458	0.0137419	0.176696	0.0949306
chr12	25237117	25237217	5298246	0	-	0.41	(0.408,0.44]	chr12	503945	15	INTRON	INTRON	KRAS	ENSG00000133703.14	ENST00000256078.10:ENST00000311936.8:ENST00000686877.1:ENST00000685328.1:ENST00000693229.1:ENST00000687356.1:ENST00000692768.1:ENST00000688940.1:ENST00000690804.1:ENST00000557334.6:ENST00000686969.1:ENST00000556131.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	29	2	2.2957	3.40587	4.51604	0.0516458	0.0137419	0.176696	0.0949306
chr17	29281499	29281599	6747670	0	-	0.41	(0.408,0.44]	chr17	663228	136	INTRON	INTRON	NUFIP2	ENSG00000108256.9	ENST00000225388.9:ENST00000579665.1	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	2.2957	3.40587	4.51604	0.0516458	0.0137419	0.176696	0.0949306
chr3	46974959	46975058	1680014	0	-	0.414141	(0.408,0.44]	chr3	171437	85	INTRON	INTRON	CCDC12	ENSG00000160799.12	ENST00000425441.5:ENST00000683445.1:ENST00000292314.6:ENST00000605358.5:ENST00000488069.5:ENST00000603885.5:ENST00000446836.5:ENST00000494655.5:ENST00000604164.5:ENST00000604181.1:ENST00000605875.1:ENST00000460035.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	29	2	2.2957	3.40587	4.51604	0.0516458	0.0137419	0.176696	0.0949306
chr3	50003412	50003512	1423594	0	+	0.42	(0.408,0.44]	chr3	149994	35	INTRON	INTRON	RBM6	ENSG00000004534.15	ENST00000442092.5:ENST00000443081.5:ENST00000419610.5:ENST00000441115.5:ENST00000422955.5:ENST00000454079.5:ENST00000266022.9:ENST00000425608.5:ENST00000434592.5:ENST00000464013.5:ENST00000483350.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	29	2	2.2957	3.40587	4.51604	0.0516458	0.0137419	0.176696	0.0949306
chr4	2619274	2619374	1913345	0	+	0.43	(0.408,0.44]	chr4	191983	226	INTRON	INTRON	RNF4:FAM193A	ENSG00000063978.16:ENSG00000125386.16	ENST00000508235.1:ENST00000637812.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	29	2	2.2957	3.40587	4.51604	0.0516458	0.0137419	0.176696	0.0949306
chr5	614428	614527	2313396	0	+	0.424242	(0.408,0.44]	chr5	223834	16	INTRON	INTRON	CEP72	ENSG00000112877.8	ENST00000264935.6	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	2.2957	3.40587	4.51604	0.0516458	0.0137419	0.176696	0.0949306
chr7	66757871	66757971	3325648	0	+	0.43	(0.408,0.44]	chr7	309238	14	INTRON	INTRON	RABGEF1	ENSG00000154710.18	ENST00000607882.5:ENST00000284957.9:ENST00000450873.6:ENST00000442563.5:ENST00000439720.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	29	2	2.2957	3.40587	4.51604	0.0516458	0.0137419	0.176696	0.0949306
chr9	89352346	89352446	4153379	0	+	0.43	(0.408,0.44]	chr9	378875	11	INTRON	INTRON	SECISBP2	ENSG00000187742.15	ENST00000375807.8:ENST00000339901.8:ENST00000534113.6:ENST00000498819.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	29	2	2.2957	3.40587	4.51604	0.0516458	0.0137419	0.176696	0.0949306
chr9	120463126	120463225	4332693	0	-	0.424242	(0.408,0.44]	chr9	398037	20	INTRON	INTRON	CDK5RAP2	ENSG00000136861.19	ENST00000349780.9:ENST00000360190.8:ENST00000687279.1:ENST00000687633.1:ENST00000684780.1:ENST00000687311.1:ENST00000479584.2:ENST00000690814.1:ENST00000686842.1:ENST00000693714.1:ENST00000693386.1:ENST00000692746.1:ENST00000686376.1:ENST00000692155.1:ENST00000690646.1:ENST00000693433.1:ENST00000688923.1:ENST00000473282.6:ENST00000480112.5:ENST00000685866.1:ENST00000689688.1:ENST00000416449.6:ENST00000691504.1:ENST00000360822.8:ENST00000693728.1:ENST00000483412.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	29	2	2.2957	3.40587	4.51604	0.0516458	0.0137419	0.176696	0.0949306
chr7	26199951	26200046	3506233	0	-	0.421053	(0.408,0.44]	chr7	327192	9	UTR5	UTR5:EXON_MRNA:INTRON	HNRNPA2B1	ENSG00000122566.22	ENST00000679318.1:ENST00000677339.1:ENST00000678501.1:ENST00000676903.1:ENST00000608362.2:ENST00000677631.1:ENST00000676749.1:ENST00000677574.1:ENST00000679123.1:ENST00000677906.1:ENST00000476233.2:ENST00000677669.1:ENST00000677321.1:ENST00000678277.1:ENST00000677571.1:ENST00000679124.1:ENST00000676932.1:ENST00000678973.1:ENST00000678183.1:ENST00000679021.1:ENST00000678035.1:ENST00000677075.1:ENST00000678075.1:ENST00000678631.1:ENST00000678998.1:ENST00000490912.6:ENST00000354667.8:ENST00000618183.5:ENST00000677839.1:ENST00000677037.1:ENST00000678449.1:ENST00000679001.1:ENST00000678962.1:ENST00000676524.1:ENST00000678935.1:ENST00000678675.1:ENST00000676746.1:ENST00000356674.8:ENST00000678431.1:ENST00000678697.1:ENST00000678779.1:ENST00000676497.1:ENST00000677396.1:ENST00000360787.8:ENST00000679243.1:ENST00000677656.1:ENST00000463181.5:ENST00000678884.1:ENST00000495810.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	54	1394	2	3.1936	3.405785	3.61797	1.3723e-8	6.02249e-9	3.96402e-5	1.95978e-5
chr6	36901521	36901620	2854962	0	+	0.616162	(0.57,1]	chr6	269879	15	INTRON	INTRON	C6orf89	ENSG00000198663.17	ENST00000359359.6:ENST00000355190.7:ENST00000373685.1:ENST00000480824.7	protein_coding	protein_coding	protein_coding	protein_coding	3	31	2	2.32017	3.40562	4.49107	0.00488159	0.00220544	0.0640618	0.0417893
chr10	15108900	15108998	4562115	0	-	0.387755	(0.378,0.408]	chr10	421066	33	UTR3	UTR3:EXON_MRNA:INTRON	NMT2	ENSG00000152465.18	ENST00000466201.1:ENST00000378165.9:ENST00000486786.1:ENST00000378150.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	43	2	1.76032	3.405615	5.05091	0.0721577	0.00118558	0.187433	0.031662
chr10	72548179	72548279	4646147	0	-	0.39	(0.378,0.408]	chr10	427441	140	INTRON	INTRON	MICU1	ENSG00000107745.20	ENST00000361114.10:ENST00000476605.7:ENST00000642044.1:ENST00000635239.1:ENST00000604238.2:ENST00000603011.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	43	2	1.76032	3.405615	5.05091	0.0721577	0.00118558	0.187433	0.031662
chr7	2547678	2547778	3468199	0	-	0.4	(0.378,0.408]	chr7	324300	2	SS3_PROX	SS3_PROX:INTRON	BRAT1	ENSG00000106009.16	ENST00000340611.9:ENST00000469750.5:ENST00000467558.5:ENST00000421712.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	43	2	1.76032	3.405615	5.05091	0.0721577	0.00118558	0.187433	0.031662
chr9	94802501	94802601	4163806	0	+	0.41	(0.408,0.44]	chr9	379584	11	INTRON	INTRON	AOPEP	ENSG00000148120.18	ENST00000375315.8:ENST00000277198.6:ENST00000297979.9:ENST00000424143.5	protein_coding	protein_coding	protein_coding	protein_coding	2	39	2	1.85305	3.4056100000000002	4.95817	0.0543543	0.00372419	0.182243	0.0535094
chr12	93426485	93426584	5388084	0	-	0.434343	(0.408,0.44]	chr12	513727	17	INTRON	INTRON	UBE2N	ENSG00000177889.10	ENST00000318066.7:ENST00000550657.1:ENST00000549833.1:ENST00000549490.1:ENST00000552442.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	42	2	1.74775	3.40559	5.06343	0.0735403	0.00101725	0.190238	0.0293497
chr15	96335393	96335490	6110344	0	+	0.412371	(0.408,0.44]	chr15	581838	4	INTRON	INTRON	NR2F2	ENSG00000185551.15	ENST00000421109.6:ENST00000394166.8:ENST00000394171.6:ENST00000453270.2	protein_coding	protein_coding	protein_coding	protein_coding	2	42	2	1.74775	3.40559	5.06343	0.0735403	0.00101725	0.190238	0.0293497
chr1	182390012	182390109	599051	0	-	0.494845	(0.476,0.515]	chr1	71414	14	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	GLUL	ENSG00000135821.19	ENST00000331872.11:ENST00000642379.1:ENST00000311223.9:ENST00000417584.6:ENST00000339526.8:ENST00000491322.1:ENST00000463851.6:ENST00000484996.5:ENST00000489818.5:ENST00000480604.5:ENST00000462444.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	179	2	2.20062	3.405515	4.61041	7.71478e-4	1.88543e-6	0.0255407	8.35956e-4
chr19	1808835	1808911	7113424	0	-	0.513158	(0.476,0.515]	chr19	714789	1	INTRON	INTRON	ATP8B3	ENSG00000130270.16	ENST00000310127.10:ENST00000531925.5:ENST00000525591.5:ENST00000526092.6:ENST00000533993.5:ENST00000587160.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	143	2	2.14785	3.4055050000000002	4.66316	0.00197135	2.88507e-6	0.0411469	0.00119813
chr5	134161321	134161417	2726197	0	-	0.364583	(0.35,0.378]	chr5	256487	3	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	SKP1	ENSG00000113558.19	ENST00000353411.11:ENST00000522552.5:ENST00000521216.5:ENST00000517691.1:ENST00000517625.5:ENST00000523966.5:ENST00000522855.5:ENST00000328392.10:ENST00000519054.5:ENST00000519321.5:ENST00000520417.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	48	2	2.84057	3.4054450000000003	3.97032	0.0578667	0.00189462	0.167723	0.0402736
chr1	12007495	12007595	26739	0	+	0.44	(0.408,0.44]	chr1	3167	2	SS5_PROX	SS5_PROX:INTRON	MFN2	ENSG00000116688.18	ENST00000444836.5:ENST00000674817.1:ENST00000675053.1:ENST00000675298.1:ENST00000675817.1:ENST00000674548.1:ENST00000675959.1:ENST00000675872.1:ENST00000676426.1:ENST00000674658.1:ENST00000674910.1:ENST00000675231.1:ENST00000235329.10:ENST00000676293.1:ENST00000675919.1:ENST00000675987.1:ENST00000675512.1:ENST00000675113.1:ENST00000675483.1:ENST00000675528.1:ENST00000675404.1:ENST00000676295.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	32	2	2.58624	3.405355	4.22447	0.0273686	0.0161655	0.123904	0.109464
chr4	504121	504221	1907398	0	+	0.43	(0.408,0.44]	chr4	191106	19	INTRON	INTRON	PIGG	ENSG00000174227.16	ENST00000453061.7:ENST00000504187.5:ENST00000310340.9:ENST00000504346.5:ENST00000503111.5:ENST00000511448.5:ENST00000383028.8:ENST00000506402.5:ENST00000509768.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	32	2	2.58624	3.405355	4.22447	0.0273686	0.0161655	0.123904	0.109464
chr6	161160302	161160402	3255043	0	-	0.42	(0.408,0.44]	chr6	302602	3	EXON_MRNA	EXON_MRNA:INTRON	AGPAT4	ENSG00000026652.15	ENST00000320285.9:ENST00000366911.9:ENST00000436279.1:ENST00000624499.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	32	2	2.58624	3.405355	4.22447	0.0273686	0.0161655	0.123904	0.109464
chr15	28852109	28852208	5989785	0	+	0.444444	(0.44,0.476]	chr15	569546	1	EXON_LNCRNA	EXON_LNCRNA:INTRON	PDCD6IPP2:ENSG00000289209	ENSG00000261377.6:ENSG00000289209.1	ENST00000566178.5:ENST00000685981.1	lncRNA	lncRNA	lncRNA:transcribed_unprocessed_pseudogene	lncRNA:processed_transcript	4	59	2	1.68545	3.40529	5.12513	0.0322071	7.96486e-4	0.132543	0.0258804
chr9	135958464	135958562	4372543	0	-	0.479592	(0.476,0.515]	chr9	402553	27	INTRON	INTRON	UBAC1	ENSG00000130560.9	ENST00000371756.4:ENST00000478485.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	66	2	2.8863	3.405195	3.92409	0.0111679	1.13525e-4	0.0877435	0.009124
chr2	200940449	200940548	1310653	0	-	0.454545	(0.44,0.476]	chr2	137179	21	INTRON	INTRON	ORC2	ENSG00000115942.9	ENST00000234296.7:ENST00000474877.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	43	2	2.19078	3.40516	4.61954	0.0226089	0.00506805	0.117489	0.0646039
chr1	150855167	150855267	552773	0	-	0.3	(0.28,0.32]	chr1	65018	15	INTRON	INTRON	ARNT	ENSG00000143437.21	ENST00000358595.10:ENST00000471844.6:ENST00000354396.6:ENST00000515192.5:ENST00000505755.5:ENST00000497108.6:ENST00000505979.5:ENST00000504358.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	47	2	2.38391	3.4051050000000003	4.4263	0.0330296	0.0122525	0.133816	0.0969406
chr10	68428249	68428348	4639318	0	-	0.50505	(0.476,0.515]	chr10	426660	50	INTRON	INTRON	DNA2	ENSG00000138346.15	ENST00000358410.8:ENST00000551118.6:ENST00000399179.6:ENST00000399180.3:ENST00000440722.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	59	2	1.75142	3.4049449999999997	5.05847	0.0259024	0.00108081	0.121522	0.0300133
chr3	48533520	48533620	1688673	0	-	0.44	(0.408,0.44]	chr3	172531	75	INTRON	INTRON	PFKFB4	ENSG00000114268.12	ENST00000232375.8:ENST00000490115.5:ENST00000383734.6:ENST00000416568.5:ENST00000417753.5:ENST00000445633.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	70	2	1.32564	3.4049	5.48416	0.0437289	5.43528e-4	0.162255	0.0215026
chr7	12391916	12392014	3485321	0	-	0.336735	(0.32,0.35]	chr7	325964	22	INTRON	INTRON	VWDE	ENSG00000146530.15	ENST00000275358.8:ENST00000452576.6:ENST00000521169.5:ENST00000326715.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	48	2	2.09005	3.4048749999999997	4.7197	0.0330483	0.00568521	0.133816	0.0678837
chr17	35603142	35603240	6599696	0	+	0.377551	(0.35,0.378]	chr17	642245	17	INTRON	INTRON	AP2B1	ENSG00000006125.18	ENST00000589774.5:ENST00000616784.4:ENST00000621914.4:ENST00000620039.4:ENST00000616681.4:ENST00000621668.4:ENST00000610402.5:ENST00000612035.4:ENST00000591610.5:ENST00000590538.5:ENST00000614600.4:ENST00000590432.5:ENST00000612116.5:ENST00000618940.4:ENST00000592167.5:ENST00000593014.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	69	2	1.49914	3.4048599999999998	5.31058	0.0306686	0.00160599	0.143385	0.0364977
chr2	9553622	9553720	1064472	0	-	0.357143	(0.35,0.378]	chr2	113563	15	INTRON	INTRON	ADAM17	ENSG00000151694.14	ENST00000310823.8:ENST00000648548.1:ENST00000649227.1:ENST00000648857.1:ENST00000647979.1:ENST00000647610.1:ENST00000650116.1:ENST00000647622.1:ENST00000649972.1:ENST00000618923.2:ENST00000478059.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	69	2	1.49914	3.4048599999999998	5.31058	0.0306686	0.00160599	0.143385	0.0364977
chr15	65758168	65758267	6209451	0	-	0.282828	(0.28,0.32]	chr15	592605	13	INTRON	INTRON	DENND4A	ENSG00000174485.16	ENST00000443035.8:ENST00000431932.6:ENST00000635620.2:ENST00000564674.5:ENST00000568515.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	54	2	1.76378	3.404785	5.04579	0.0395495	0.00714672	0.161534	0.0723634
chr1	21772267	21772367	396761	0	-	0.45	(0.44,0.476]	chr1	47345	141	INTRON	INTRON	USP48	ENSG00000090686.16	ENST00000400301.5:ENST00000308271.14:ENST00000529637.5:ENST00000421625.6:ENST00000527823.5:ENST00000532737.1:ENST00000489108.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	54	2	2.572	3.404775	4.23755	0.0263357	0.00173736	0.122221	0.03851
chr2	241656731	241656830	1055669	0	+	0.555556	(0.515,0.57]	chr2	112516	10	INTRON	INTRON	ATG4B	ENSG00000168397.17	ENST00000405546.7:ENST00000402096.5:ENST00000494465.5:ENST00000483778.5:ENST00000404914.8:ENST00000468018.5:ENST00000482507.5:ENST00000493618.5:ENST00000425239.5:ENST00000400771.7:ENST00000430617.6:ENST00000344376.9:ENST00000429899.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	38	2	2.21273	3.404515	4.5963	0.0196151	0.00370287	0.109486	0.0561162
chr6	149730624	149730721	3246806	0	-	0.443299	(0.44,0.476]	chr6	301671	31	INTRON	INTRON	NUP43	ENSG00000120253.14	ENST00000340413.7:ENST00000367404.8	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	2.97451	3.404455	3.8344	0.041276	0.00853825	0.161534	0.0780043
chr19	2453784	2453883	7116151	0	-	0.575758	(0.57,1]	chr19	715394	89	INTRON	INTRON	LMNB2	ENSG00000176619.13	ENST00000325327.4	protein_coding	protein_coding	protein_coding	protein_coding	2	26	2	2.13445	3.40444	4.67443	0.0241482	8.07515e-4	0.12011	0.0258804
chr13	39038639	39038723	5469463	0	+	0.5	(0.476,0.515]	chr13	524088	1	CDS_START	CDS_START:CDS:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NHLRC3	ENSG00000188811.14	ENST00000473371.1:ENST00000470258.5:ENST00000379599.6:ENST00000379600.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	114	2	3.39465	3.404275	3.4139	1.63554e-4	1.00747e-4	0.0116917	0.00847812
chr11	3365955	3366053	4893715	0	-	0.520408	(0.515,0.57]	chr11	458671	35	EXON_MRNA	EXON_MRNA:INTRON	ZNF195	ENSG00000005801.18	ENST00000528796.5:ENST00000399602.9:ENST00000354599.10:ENST00000343338.11:ENST00000620374.4:ENST00000649622.1:ENST00000429541.6:ENST00000005082.13:ENST00000526601.5:ENST00000438262.6:ENST00000528410.5:ENST00000528218.5:ENST00000529789.5:ENST00000525313.6:ENST00000533036.5:ENST00000529228.5:ENST00000529678.5:ENST00000528636.1:ENST00000427810.6:ENST00000534569.5:ENST00000524857.5:ENST00000530643.5:ENST00000618467.4:ENST00000330692.11	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	36	2	2.39351	3.404245	4.41498	0.0106866	0.0100431	0.0881096	0.0861859
chrX	73959584	73959682	7682252	0	+	0.346939	(0.32,0.35]	chrX	786628	6	INTRON	INTRON	JPX	ENSG00000225470.8	ENST00000664637.1:ENST00000639185.1:ENST00000655090.1:ENST00000640437.1:ENST00000660546.1:ENST00000667886.1:ENST00000660840.1:ENST00000657179.1:ENST00000670506.1:ENST00000657910.1:ENST00000662120.1:ENST00000671207.1:ENST00000659254.1:ENST00000656624.1:ENST00000667573.1:ENST00000660856.1:ENST00000660836.1:ENST00000668590.1:ENST00000658649.1:ENST00000414209.6:ENST00000654137.1:ENST00000670994.1:ENST00000653479.1:ENST00000602772.5:ENST00000655879.1:ENST00000657372.1:ENST00000657096.1:ENST00000602985.6:ENST00000670685.1:ENST00000670503.1:ENST00000663027.1:ENST00000654995.1:ENST00000602895.6:ENST00000654374.1:ENST00000660087.1:ENST00000665032.1:ENST00000671336.1:ENST00000671476.1:ENST00000667057.1:ENST00000670192.1:ENST00000670464.1:ENST00000665345.1:ENST00000661546.1:ENST00000662543.1:ENST00000602938.6:ENST00000664295.1:ENST00000654005.1:ENST00000669149.1:ENST00000659852.1:ENST00000656509.1:ENST00000602294.6:ENST00000667294.1:ENST00000663470.1:ENST00000602920.6:ENST00000671021.1:ENST00000659849.1:ENST00000667937.1:ENST00000661130.1:ENST00000654196.1:ENST00000655994.1:ENST00000659373.1:ENST00000662239.1:ENST00000670805.1:ENST00000656263.1:ENST00000653069.1:ENST00000657638.1:ENST00000653808.1:ENST00000653929.1:ENST00000653885.1:ENST00000659023.1:ENST00000602546.5:ENST00000659622.1:ENST00000671518.1:ENST00000670408.1	lncRNA	lncRNA	lncRNA	lncRNA	2	47	2	1.94202	3.4041200000000003	4.86622	0.0486128	0.00354075	0.153946	0.0546236
chr6	34307379	34307479	3083920	0	-	0.49	(0.476,0.515]	chr6	288627	113	INTRON	INTRON	NUDT3:RPS10-NUDT3	ENSG00000272325.2:ENSG00000270800.3	ENST00000607016.2:ENST00000639725.1:ENST00000639877.1:ENST00000605528.2	protein_coding	protein_coding	protein_coding	protein_coding	5	66	2	1.62782	3.404105	5.18039	0.0274391	6.58744e-4	0.123904	0.0232396
chr2	26257060	26257159	714284	0	+	0.414141	(0.408,0.44]	chr2	82487	22	INTRON	INTRON	HADHB	ENSG00000138029.14	ENST00000448743.5:ENST00000537713.5:ENST00000405867.7:ENST00000317799.10:ENST00000425035.5:ENST00000412805.5	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	2.18807	3.4040800000000004	4.62009	0.0708044	0.00504155	0.184528	0.0646039
chr22	28617252	28617352	7572308	0	-	0.42	(0.408,0.44]	chr22	774287	1743	INTRON	INTRON	TTC28	ENSG00000100154.15	ENST00000397906.7	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	2.18807	3.4040800000000004	4.62009	0.0708044	0.00504155	0.184528	0.0646039
chr22	41093995	41094095	7521507	0	+	0.41	(0.408,0.44]	chr22	768515	5	INTRON	INTRON	EP300	ENSG00000100393.14	ENST00000263253.9:ENST00000674155.1	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	2.18807	3.4040800000000004	4.62009	0.0708044	0.00504155	0.184528	0.0646039
chr6	127268987	127269087	2958386	0	+	0.44	(0.408,0.44]	chr6	278140	15	INTRON	INTRON	RNF146	ENSG00000118518.17	ENST00000476956.5:ENST00000609447.5:ENST00000356799.6:ENST00000495188.2:ENST00000368314.6:ENST00000477776.5:ENST00000609944.5:ENST00000608991.5:ENST00000610153.1:ENST00000489534.5:ENST00000610162.5:ENST00000608340.5:ENST00000480444.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	31	2	2.18807	3.4040800000000004	4.62009	0.0708044	0.00504155	0.184528	0.0646039
chr9	136445719	136445819	4374632	0	-	0.44	(0.408,0.44]	chr9	402956	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	SEC16A	ENSG00000148396.19	ENST00000290037.10:ENST00000313050.11:ENST00000371706.8:ENST00000453963.5:ENST00000277537.10:ENST00000313084.9:ENST00000684901.1:ENST00000689049.1:ENST00000689439.1:ENST00000688461.1:ENST00000688052.1:ENST00000690691.1:ENST00000431893.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	31	2	2.18807	3.4040800000000004	4.62009	0.0708044	0.00504155	0.184528	0.0646039
chr14	102701630	102701730	5823626	0	+	0.29	(0.28,0.32]	chr14	552503	3	SS5_PROX	SS5_PROX:INTRON	RCOR1	ENSG00000089902.10	ENST00000262241.7	protein_coding	protein_coding	protein_coding	protein_coding	4	62	2	1.60333	3.403965	5.2046	0.0413158	0.00448664	0.161534	0.0593175
chr2	15527744	15527844	1072826	0	-	0.31	(0.28,0.32]	chr2	114441	160	INTRON	INTRON	NBAS	ENSG00000151779.13	ENST00000281513.10	protein_coding	protein_coding	protein_coding	protein_coding	4	62	2	1.60333	3.403965	5.2046	0.0413158	0.00448664	0.161534	0.0593175
chr16	68171786	68171886	6371095	0	+	0.52	(0.515,0.57]	chr16	612221	44	INTRON	INTRON	NFATC3	ENSG00000072736.19	ENST00000563319.5:ENST00000569766.5:ENST00000553077.5:ENST00000566301.5:ENST00000549350.5:ENST00000575270.5:ENST00000346183.8:ENST00000568466.6:ENST00000539828.6:ENST00000349223.9:ENST00000329524.8:ENST00000379165.8:ENST00000562926.5:ENST00000570212.5:ENST00000563796.5:ENST00000567152.5:ENST00000563288.5:ENST00000535127.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	45	2	1.49871	3.40396	5.30921	0.0770828	1.98811e-4	0.196285	0.0122787
chr2	61465656	61465756	1130503	0	-	0.53	(0.515,0.57]	chr2	121499	445	INTRON	INTRON	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000453133.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	45	2	1.49871	3.40396	5.30921	0.0770828	1.98811e-4	0.196285	0.0122787
chr16	4840804	4840904	6438956	0	-	0.44	(0.408,0.44]	chr16	620202	75	INTRON	INTRON	GLYR1	ENSG00000140632.17	ENST00000321919.14:ENST00000436648.9:ENST00000588732.5:ENST00000589389.5:ENST00000591451.5:ENST00000588297.5:ENST00000587875.1:ENST00000591159.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	31	2	2.27698	3.40393	4.53088	0.0583528	0.00669275	0.167723	0.0738715
chr16	19710871	19710942	6458600	0	-	0.422535	(0.408,0.44]	chr16	622984	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	KNOP1	ENSG00000103550.14	ENST00000219837.12:ENST00000568230.5:ENST00000567367.1:ENST00000565844.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	31	2	2.27698	3.40393	4.53088	0.0583528	0.00669275	0.167723	0.0738715
chr17	39483758	39483858	6607211	0	+	0.41	(0.408,0.44]	chr17	643264	116	INTRON	INTRON	CDK12	ENSG00000167258.15	ENST00000447079.6:ENST00000584632.5:ENST00000430627.6:ENST00000581593.1	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	2.27698	3.40393	4.53088	0.0583528	0.00669275	0.167723	0.0738715
chr4	174318169	174318267	2082938	0	+	0.459184	(0.44,0.476]	chr4	205864	9	UTR3	UTR3:EXON_MRNA:INTRON	CEP44	ENSG00000164118.13	ENST00000457424.6:ENST00000396791.7:ENST00000503780.6:ENST00000426172.3:ENST00000296519.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	290	2	3.31413	3.403885	3.49364	2.19943e-6	1.34554e-6	0.00103079	6.8311e-4
chr1	32171092	32171192	64101	0	+	0.47	(0.44,0.476]	chr1	8150	3	UTR3	UTR3:EXON_MRNA	KPNA6	ENSG00000025800.14	ENST00000373625.8:ENST00000471599.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	85	2	3.15639	3.40387	3.65135	6.34922e-4	3.93757e-4	0.023163	0.0178567
chr2	240480155	240480248	1345865	0	-	0.494624	(0.476,0.515]	chr2	141174	1	INTRON	INTRON	ANKMY1	ENSG00000144504.16	ENST00000361678.8:ENST00000391987.5:ENST00000401804.6:ENST00000272972.7:ENST00000406958.5:ENST00000373318.6:ENST00000403283.5	protein_coding	protein_coding	protein_coding	protein_coding	2	64	2	3.35059	3.4038500000000003	3.45711	0.00171515	0.00140905	0.0381936	0.0340865
chr1	220029000	220029098	639014	0	-	0.357143	(0.35,0.378]	chr1	75303	34	INTRON	INTRON	EPRS1	ENSG00000136628.18	ENST00000366923.8:ENST00000609181.5:ENST00000477030.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	72	2	2.83709	3.403745	3.9704	0.01435	1.01653e-4	0.0966737	0.00850967
chr21	17605133	17605224	7433011	0	-	0.406593	(0.378,0.408]	chr21	758032	1	SS3_PROX	SS3_PROX:INTRON	BTG3	ENSG00000154640.15	ENST00000348354.7:ENST00000339775.10	protein_coding	protein_coding	protein_coding	protein_coding	3	52	2	1.63458	3.403695	5.17281	0.0573057	7.27294e-4	0.167723	0.0245647
chr10	48328861	48328961	4431211	0	+	0.31	(0.28,0.32]	chr10	408569	25	INTRON	INTRON	MAPK8	ENSG00000107643.17	ENST00000395611.7:ENST00000432379.5:ENST00000374189.6:ENST00000429041.6:ENST00000374179.8:ENST00000426557.5:ENST00000476134.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	33	2	2.38101	3.403655	4.4263	0.0456017	0.0330296	0.164236	0.133816
chr13	94587982	94588080	5636931	0	-	0.295918	(0.28,0.32]	chr13	536949	44	INTRON	INTRON	TGDS	ENSG00000088451.11	ENST00000261296.7:ENST00000498294.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	33	2	2.38101	3.403655	4.4263	0.0456017	0.0330296	0.164236	0.133816
chr16	29560415	29560515	6471201	0	-	0.29	(0.28,0.32]	chr16	625274	2	SS3_PROX	SS3_PROX:INTRON	ENSG00000288632:SMG1P2	ENSG00000288632.1:ENSG00000205534.6	ENST00000675579.1:ENST00000566127.1	lncRNA	lncRNA	lncRNA:transcribed_unprocessed_pseudogene	lncRNA:transcribed_unprocessed_pseudogene	1	33	2	2.38101	3.403655	4.4263	0.0456017	0.0330296	0.164236	0.133816
chr17	16146848	16146948	6734538	0	-	0.29	(0.28,0.32]	chr17	660696	3	SS3_PROX	SS3_PROX:INTRON	NCOR1	ENSG00000141027.22	ENST00000268712.8:ENST00000395851.5:ENST00000395848.5:ENST00000411510.5:ENST00000582357.5:ENST00000436828.5:ENST00000460276.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	33	2	2.38101	3.403655	4.4263	0.0456017	0.0330296	0.164236	0.133816
chr2	75893585	75893685	817095	0	+	0.29	(0.28,0.32]	chr2	91391	207	INTRON	INTRON	ENSG00000287474	ENSG00000287474.1	ENST00000670606.1	lncRNA	lncRNA	lncRNA	lncRNA	1	33	2	2.38101	3.403655	4.4263	0.0456017	0.0330296	0.164236	0.133816
chr6	75615466	75615566	2905078	0	+	0.32	(0.28,0.32]	chr6	274477	125	INTRON	INTRON	SENP6	ENSG00000112701.18	ENST00000370010.6:ENST00000447266.7:ENST00000327284.12:ENST00000493959.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	33	2	2.38101	3.403655	4.4263	0.0456017	0.0330296	0.164236	0.133816
chr7	72888237	72888336	3329878	0	+	0.313131	(0.28,0.32]	chr7	309555	80	INTRON	INTRON	POM121	ENSG00000196313.13	ENST00000627934.3:ENST00000395270.5	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	2.38101	3.403655	4.4263	0.0456017	0.0330296	0.164236	0.133816
chr7	87014948	87015048	3564984	0	-	0.31	(0.28,0.32]	chr7	332199	491	INTRON	INTRON	ELAPOR2	ENSG00000164659.15	ENST00000450689.7:ENST00000444627.5:ENST00000423294.5	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	2.38101	3.403655	4.4263	0.0456017	0.0330296	0.164236	0.133816
chr9	96970259	96970358	4298555	0	-	0.313131	(0.28,0.32]	chr9	395256	110	INTRON	INTRON	MFSD14C	ENSG00000196312.15	ENST00000647176.1:ENST00000645073.1:ENST00000637076.1:ENST00000637099.1:ENST00000637864.1:ENST00000652726.1:ENST00000637811.1:ENST00000650909.1	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript:transcribed_unprocessed_pseudogene	1	33	2	2.38101	3.403655	4.4263	0.0456017	0.0330296	0.164236	0.133816
chr1	212048615	212048715	307470	0	+	0.29	(0.28,0.32]	chr1	35478	8	INTRON	INTRON	DTL	ENSG00000143476.18	ENST00000542077.5:ENST00000366991.5:ENST00000475419.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	33	2	2.29724	3.403525	4.50981	0.0554156	0.0275554	0.18407	0.123904
chr13	26404563	26404659	5459364	0	+	0.3125	(0.28,0.32]	chr13	523080	6	UTR3	UTR3:EXON_MRNA	CDK8	ENSG00000132964.12	ENST00000536792.5:ENST00000381527.8:ENST00000477277.5:ENST00000480323.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	33	2	2.29724	3.403525	4.50981	0.0554156	0.0275554	0.18407	0.123904
chr14	63536328	63536428	5907835	0	-	0.32	(0.28,0.32]	chr14	561136	282	INTRON	INTRON	PPP2R5E	ENSG00000154001.14	ENST00000337537.8:ENST00000555899.1:ENST00000553266.5:ENST00000556878.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	33	2	2.29724	3.403525	4.50981	0.0554156	0.0275554	0.18407	0.123904
chr15	68189017	68189116	6057320	0	+	0.313131	(0.28,0.32]	chr15	576638	13	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	PIAS1	ENSG00000033800.14	ENST00000249636.11:ENST00000563996.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	33	2	2.29724	3.403525	4.50981	0.0554156	0.0275554	0.18407	0.123904
chr17	19963422	19963522	6741948	0	-	0.31	(0.28,0.32]	chr17	661935	4	SS3_PROX	SS3_PROX:INTRON	AKAP10	ENSG00000108599.15	ENST00000225737.11:ENST00000395536.7:ENST00000582611.5:ENST00000572155.1:ENST00000572341.5:ENST00000576896.5:ENST00000571858.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	33	2	2.29724	3.403525	4.50981	0.0554156	0.0275554	0.18407	0.123904
chr20	31606346	31606430	7253656	0	+	0.309524	(0.28,0.32]	chr20	736721	4	UTR3	UTR3:EXON_MRNA	ID1	ENSG00000125968.9	ENST00000376105.4:ENST00000376112.4	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	2.29724	3.403525	4.50981	0.0554156	0.0275554	0.18407	0.123904
chr3	10039975	10040074	1362322	0	+	0.282828	(0.28,0.32]	chr3	143463	2	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	FANCD2	ENSG00000144554.13	ENST00000682647.1:ENST00000287647.7:ENST00000676013.1:ENST00000675286.1:ENST00000419585.5:ENST00000431693.1:ENST00000438741.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	33	2	2.29724	3.403525	4.50981	0.0554156	0.0275554	0.18407	0.123904
chr3	40489113	40489210	1402150	0	+	0.28866000000000003	(0.28,0.32]	chr3	147316	10	UTR3	UTR3:EXON_MRNA:INTRON	ZNF619:ZNF620	ENSG00000177873.14:ENSG00000177842.12	ENST00000447116.6:ENST00000429348.6:ENST00000432264.4:ENST00000649142.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	33	2	2.29724	3.403525	4.50981	0.0554156	0.0275554	0.18407	0.123904
chr8	108482367	108482465	3847386	0	+	0.316327	(0.28,0.32]	chr8	354338	29	INTRON	INTRON	EMC2	ENSG00000104412.8	ENST00000220853.8:ENST00000519642.1:ENST00000520294.5:ENST00000519450.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	33	2	2.29724	3.403525	4.50981	0.0554156	0.0275554	0.18407	0.123904
chr11	239972	240071	4718066	0	+	0.363636	(0.35,0.378]	chr11	435646	5	INTRON	INTRON	PSMD13	ENSG00000185627.19	ENST00000529372.5:ENST00000532097.6:ENST00000431206.6:ENST00000534590.5:ENST00000528906.5:ENST00000525665.5:ENST00000527047.5:ENST00000352303.9:ENST00000382671.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	56	2	1.54563	3.4034400000000002	5.26125	0.046845	0.00191117	0.167716	0.03947
chr21	37518598	37518698	7407765	0	+	0.45	(0.44,0.476]	chr21	754961	62	UTR3	UTR3:EXON_MRNA	DYRK1A	ENSG00000157540.22	ENST00000647188.2:ENST00000646548.1	protein_coding	protein_coding	protein_coding	protein_coding	2	46	2	2.47339	3.403425	4.33346	0.0120349	0.0090196	0.0962115	0.080367
chr17	82450278	82450378	6853279	0	-	0.45	(0.44,0.476]	chr17	679302	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CYBC1	ENSG00000178927.18	ENST00000306645.10:ENST00000342572.12:ENST00000434650.6:ENST00000584024.5:ENST00000437807.6:ENST00000583617.5:ENST00000585064.5:ENST00000578919.5:ENST00000580560.5:ENST00000581196.5:ENST00000584503.5:ENST00000585080.5:ENST00000577888.5:ENST00000577707.5:ENST00000578913.5:ENST00000584891.5:ENST00000584408.5:ENST00000577696.5:ENST00000577471.5:ENST00000577834.5:ENST00000578941.5:ENST00000578064.1:ENST00000582395.5:ENST00000582608.5:ENST00000583359.1:ENST00000582545.2:ENST00000583778.1:ENST00000583242.1:ENST00000585115.1:ENST00000584791.1:ENST00000582456.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	78	2	1.35523	3.4031	5.45097	0.0430576	1.90652e-4	0.148082	0.0120089
chr2	224577482	224577581	1336267	0	-	0.555556	(0.515,0.57]	chr2	140179	78	INTRON	INTRON	CUL3	ENSG00000036257.14	ENST00000344951.8:ENST00000264414.9	protein_coding	protein_coding	protein_coding	protein_coding	6	114	2	2.21892	3.40301	4.5871	0.00198472	2.49041e-6	0.0411469	0.00111119
chr1	171530242	171530342	253673	0	+	0.44	(0.408,0.44]	chr1	30152	20	INTRON	INTRON	PRRC2C	ENSG00000117523.18	ENST00000647382.2:ENST00000367742.7:ENST00000476522.5:ENST00000338920.8:ENST00000426496.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	217	2	3.10207	3.40287	3.70367	6.28455e-5	5.2543e-7	0.00704274	3.90753e-4
chr1	229340826	229340922	652594	0	-	0.375	(0.35,0.378]	chr1	77253	3	INTRON	INTRON	CCSAP	ENSG00000154429.11	ENST00000366687.5:ENST00000284617.7:ENST00000483092.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	141	2	2.56532	3.402805	4.24029	4.08385e-4	4.91603e-5	0.0181306	0.00608708
chr16	23989090	23989189	6325293	0	+	0.474747	(0.44,0.476]	chr16	605711	1	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000498739.1:ENST00000647422.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	64	2	3.12799	3.4026899999999998	3.67739	0.0050635	3.8961e-4	0.0621733	0.0177751
chr7	6038359	6038459	3476028	0	-	0.42	(0.408,0.44]	chr7	325187	4	SS5_PROX	SS5_PROX:INTRON	EIF2AK1	ENSG00000086232.13	ENST00000199389.11	protein_coding	protein_coding	protein_coding	protein_coding	8	76	2	1.41217	3.402685	5.3932	0.0272418	7.81492e-4	0.136494	0.0257168
chr7	121217419	121217519	3395943	0	+	0.33	(0.32,0.35]	chr7	317781	674	INTRON	INTRON	CPED1	ENSG00000106034.18	ENST00000310396.10:ENST00000450913.6:ENST00000423795.5:ENST00000466055.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	51	2	1.72898	3.402635	5.07629	0.0425433	0.00468114	0.161951	0.0600108
chr16	22269358	22269457	6321324	0	+	0.393939	(0.378,0.408]	chr16	605161	21	INTRON	INTRON	EEF2K	ENSG00000103319.12	ENST00000263026.10	protein_coding	protein_coding	protein_coding	protein_coding	2	43	2	1.88729	3.4025250000000002	4.91776	0.0532327	0.00196368	0.162538	0.0411469
chr20	38070716	38070816	7269255	0	+	0.4	(0.378,0.408]	chr20	738717	2	INTRON	INTRON	RPRD1B	ENSG00000101413.12	ENST00000462548.6:ENST00000373433.9:ENST00000449186.2:ENST00000618318.1:ENST00000614670.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	237	2	3.0411	3.402505	3.76391	1.03074e-5	4.5729e-6	0.00235018	0.00157482
chr20	41086545	41086644	7274089	0	+	0.494949	(0.476,0.515]	chr20	739249	16	INTRON	INTRON	TOP1	ENSG00000198900.7	ENST00000361337.3:ENST00000681113.1:ENST00000681058.1:ENST00000681392.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	57	2	1.40757	3.40233	5.39709	0.0707852	2.55871e-4	0.184528	0.0142249
chr3	21547594	21547694	1387384	0	+	0.41	(0.408,0.44]	chr3	145351	42	INTRON	INTRON	ZNF385D-AS1	ENSG00000225542.2	ENST00000662195.1:ENST00000412369.1	lncRNA	lncRNA	lncRNA	lncRNA	3	51	2	1.74108	3.4022550000000003	5.06343	0.0424099	0.00101725	0.148082	0.0293497
chr1	10115161	10115260	19959	0	+	0.454545	(0.44,0.476]	chr1	1882	74	INTRON	INTRON	UBE4B	ENSG00000130939.20	ENST00000672724.1:ENST00000253251.12:ENST00000343090.11	protein_coding	protein_coding	protein_coding	protein_coding	6	157	2	2.87429	3.4022249999999996	3.93016	2.11295e-4	4.15647e-6	0.0132201	0.0013576
chr11	578691	578791	4719593	0	+	0.52	(0.515,0.57]	chr11	436159	17	INTRON	INTRON	PHRF1	ENSG00000070047.13	ENST00000264555.10:ENST00000416188.3:ENST00000534320.5:ENST00000413872.6:ENST00000533464.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	29	2	2.76354	3.4022	4.04086	0.0197045	0.0147344	0.120063	0.0983813
chr12	122416925	122417025	5441625	0	-	0.55	(0.515,0.57]	chr12	520453	163	INTRON	INTRON	CLIP1	ENSG00000130779.22	ENST00000361654.8:ENST00000358808.6:ENST00000620786.5:ENST00000537178.5:ENST00000539080.1	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	2.76354	3.4022	4.04086	0.0197045	0.0147344	0.120063	0.0983813
chr9	131157584	131157684	4215955	0	+	0.43	(0.408,0.44]	chr9	386591	53	INTRON	INTRON	NUP214	ENSG00000126883.19	ENST00000695497.1:ENST00000695498.1:ENST00000695496.1:ENST00000695495.1:ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000651022.1:ENST00000525980.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	142	2	2.4475	3.4021399999999997	4.35678	3.98022e-4	1.96856e-5	0.0179298	0.00359652
chr20	32786101	32786201	7256895	0	+	0.51	(0.476,0.515]	chr20	737139	2	SS3_PROX	SS3_PROX:INTRON	DNMT3B	ENSG00000088305.19	ENST00000696232.1:ENST00000328111.6:ENST00000696231.1:ENST00000348286.6:ENST00000353855.6:ENST00000696233.1:ENST00000443239.7:ENST00000696234.1:ENST00000696235.1:ENST00000456297.6:ENST00000696236.1:ENST00000696237.1:ENST00000201963.3:ENST00000696238.1:ENST00000696239.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	138	2	3.27481	3.40213	3.52945	2.99781e-4	7.92437e-6	0.0160591	0.0020223
chr19	1648596	1648694	7113075	0	-	0.571429	(0.57,1]	chr19	714657	18	INTRON	INTRON	TCF3	ENSG00000071564.17	ENST00000344749.9:ENST00000611869.5:ENST00000262965.12:ENST00000588136.7:ENST00000453954.6:ENST00000395423.7:ENST00000587235.6:ENST00000586318.1	protein_coding	protein_coding	protein_coding	protein_coding	4	56	2	2.55379	3.4020149999999996	4.25024	0.0015786	6.01239e-6	0.0362091	0.0017156
chr4	78809368	78809468	1981715	0	+	0.47	(0.44,0.476]	chr4	198463	323	INTRON	INTRON	BMP2K	ENSG00000138756.19	ENST00000389010.7:ENST00000502613.3:ENST00000502871.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	137	2	2.95304	3.40189	3.85074	3.68938e-4	7.00776e-6	0.0178272	0.00187943
chr5	146159006	146159106	2747169	0	-	0.52	(0.515,0.57]	chr5	258858	2	SS5_PROX	SS5_PROX:INTRON	LARS1	ENSG00000133706.19	ENST00000674174.1:ENST00000674170.1:ENST00000674479.1:ENST00000674309.1:ENST00000674218.1:ENST00000674467.1:ENST00000674290.1:ENST00000674447.1:ENST00000674270.1:ENST00000674383.1:ENST00000674191.1:ENST00000674158.1:ENST00000394434.7:ENST00000674398.1:ENST00000674277.1:ENST00000274562.13:ENST00000510191.5:ENST00000674310.1:ENST00000512412.2:ENST00000674417.1:ENST00000674450.1:ENST00000674412.1:ENST00000618084.2:ENST00000511505.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	74	2	2.804	3.40184	3.99968	0.00215855	5.71792e-5	0.0417866	0.00617842
chr3	180949938	180950033	1568988	0	+	0.378947	(0.378,0.408]	chr3	162401	2	INTRON	INTRON	FXR1	ENSG00000114416.18	ENST00000305586.11:ENST00000475315.5:ENST00000357559.9:ENST00000468861.5:ENST00000491062.5:ENST00000445140.6:ENST00000472339.5:ENST00000480918.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	49	2	2.14029	3.401835	4.66338	0.0106742	0.0103469	0.0917199	0.0850389
chr6	7122376	7122476	2798509	0	+	0.5	(0.476,0.515]	chr6	263723	133	INTRON	INTRON	RREB1	ENSG00000124782.21	ENST00000379933.7:ENST00000491191.5:ENST00000471433.5:ENST00000379938.7:ENST00000467782.5:ENST00000349384.10:ENST00000334984.10:ENST00000475946.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	103	2	2.74942	3.401375	4.05333	9.59979e-4	5.62932e-5	0.0282401	0.00613846
chr17	31952475	31952575	6595832	0	+	0.35	(0.32,0.35]	chr17	641554	44	INTRON	INTRON	SUZ12	ENSG00000178691.11	ENST00000322652.10:ENST00000580398.1	protein_coding	protein_coding	protein_coding	protein_coding	5	65	2	1.37958	3.401315	5.42305	0.0577841	0.00149027	0.188484	0.035
chr6	13670717	13670817	3058814	0	-	0.44	(0.408,0.44]	chr6	284542	115	INTRON	INTRON	RANBP9	ENSG00000010017.13	ENST00000011619.6	protein_coding	protein_coding	protein_coding	protein_coding	4	56	2	2.04842	3.4012000000000002	4.75398	0.00797555	0.00703931	0.0798772	0.0718189
chr20	3921955	3922053	7227233	0	+	0.520408	(0.515,0.57]	chr20	734522	28	INTRON	INTRON	PANK2	ENSG00000125779.24	ENST00000497424.5:ENST00000316562.9:ENST00000610179.7:ENST00000643504.2:ENST00000336066.8:ENST00000646394.1:ENST00000621507.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	30	2	2.90311	3.400835	3.89856	0.0280943	0.0094233	0.137011	0.0817766
chr17	44441690	44441789	6780214	0	-	0.59596	(0.57,1]	chr17	668667	26	INTRON	INTRON	GPATCH8	ENSG00000186566.13	ENST00000591680.6:ENST00000335500.8:ENST00000587228.5:ENST00000585614.1:ENST00000590041.5:ENST00000586265.5:ENST00000592746.5:ENST00000586037.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	98	2	3.08169	3.400795	3.7199	1.94297e-5	6.02159e-7	0.00357248	4.21585e-4
chr12	123401388	123401487	5242754	0	+	0.424242	(0.408,0.44]	chr12	498205	46	INTRON	INTRON	KMT5A	ENSG00000183955.14	ENST00000402868.8:ENST00000437519.5:ENST00000461103.5:ENST00000437502.1:ENST00000485469.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	65	2	3.00595	3.400645	3.79534	0.00781452	2.17043e-4	0.0759016	0.0129235
chr20	38421860	38421955	7342168	0	-	0.473684	(0.44,0.476]	chr20	748299	10	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	SNHG17	ENSG00000196756.14	ENST00000654008.2:ENST00000658076.1:ENST00000662982.2:ENST00000667188.1:ENST00000456953.7:ENST00000654183.2:ENST00000663540.2:ENST00000651115.2:ENST00000667835.1:ENST00000660885.2:ENST00000662213.1:ENST00000665233.2:ENST00000666268.2:ENST00000665735.1:ENST00000660558.2:ENST00000691280.1:ENST00000658488.2:ENST00000688336.1:ENST00000668054.2:ENST00000690441.1:ENST00000655520.2:ENST00000687490.1:ENST00000664626.1:ENST00000658051.1:ENST00000668042.1:ENST00000686971.1:ENST00000663187.1:ENST00000669114.1:ENST00000653343.1:ENST00000666225.1:ENST00000659186.1:ENST00000671309.1:ENST00000669405.1:ENST00000666806.1:ENST00000657665.1:ENST00000667282.1:ENST00000655311.1:ENST00000657868.1:ENST00000663534.1:ENST00000658141.1:ENST00000689917.1:ENST00000664073.2:ENST00000653697.1:ENST00000656320.1:ENST00000686814.1:ENST00000417578.7:ENST00000654853.1:ENST00000665440.1:ENST00000659102.1:ENST00000436764.7:ENST00000668482.2:ENST00000671249.1:ENST00000655692.1:ENST00000662568.1:ENST00000659255.1:ENST00000665693.1:ENST00000693250.1:ENST00000691368.1:ENST00000693227.1:ENST00000690361.1:ENST00000670051.1:ENST00000667912.1:ENST00000693665.1:ENST00000665181.1:ENST00000687532.1:ENST00000691386.1:ENST00000693684.1:ENST00000666331.1:ENST00000669480.1:ENST00000658905.1:ENST00000661252.1:ENST00000669137.1:ENST00000688133.1:ENST00000689414.1:ENST00000691314.1:ENST00000669033.1:ENST00000686145.1:ENST00000653938.1:ENST00000663784.1:ENST00000665003.1:ENST00000659400.1:ENST00000653753.1:ENST00000449469.5:ENST00000654389.1:ENST00000657429.1:ENST00000667412.1:ENST00000654092.1:ENST00000653277.1:ENST00000663955.1:ENST00000664964.1:ENST00000658324.1:ENST00000656023.1:ENST00000692262.1:ENST00000414142.5:ENST00000659753.1:ENST00000670958.1:ENST00000657216.2:ENST00000664636.1:ENST00000657843.1:ENST00000660189.1:ENST00000660064.1:ENST00000655198.1:ENST00000662572.1:ENST00000423536.6:ENST00000658455.1:ENST00000666419.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	6	131	2	2.24345	3.400605	4.55776	0.00250928	2.5822e-6	0.0446195	0.00102358
chr17	44884855	44884955	6781406	0	-	0.33	(0.32,0.35]	chr17	668863	2	SS5_PROX	SS5_PROX:INTRON	EFTUD2	ENSG00000108883.13	ENST00000426333.7:ENST00000592576.5:ENST00000591382.5:ENST00000402521.7:ENST00000588374.1:ENST00000593072.5:ENST00000589825.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	51	2	1.78201	3.4005900000000002	5.01917	0.0365003	0.0055659	0.153759	0.0648867
chr14	22833989	22834071	5656531	0	+	0.573171	(0.57,1]	chr14	539364	1	SS3_PROX	SS3_PROX:INTRON	MRPL52	ENSG00000172590.18	ENST00000355151.9:ENST00000397496.7:ENST00000556654.5:ENST00000555345.5:ENST00000432849.7:ENST00000553711.5:ENST00000556465.5:ENST00000397505.2:ENST00000557221.1:ENST00000311892.10:ENST00000556840.5:ENST00000555536.1:ENST00000553965.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	31	2	1.83769	3.400525	4.96336	0.0297587	2.05554e-4	0.12908	0.0124557
chr1	51422022	51422104	453369	0	-	0.256098	[0,0.28]	chr1	54369	3	EXON_LNCRNA	EXON_LNCRNA:SS3_PROX:INTRON	EPS15	ENSG00000085832.17	ENST00000371733.8:ENST00000371730.6:ENST00000493793.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	36	2	2.5055	3.40043	4.29536	0.0590175	0.0359431	0.167915	0.152322
chr11	76477435	76477535	4835829	0	+	0.23	[0,0.28]	chr11	451075	42	INTRON	INTRON	EMSY	ENSG00000158636.17	ENST00000427574.6:ENST00000695367.1:ENST00000334736.7:ENST00000524490.5:ENST00000533972.5:ENST00000525038.5:ENST00000524767.5:ENST00000525919.5:ENST00000533248.5:ENST00000529032.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	36	2	2.5055	3.40043	4.29536	0.0590175	0.0359431	0.167915	0.152322
chr2	58225152	58225251	1126593	0	-	0.181818	[0,0.28]	chr2	120953	12	INTRON	INTRON	FANCL	ENSG00000115392.13	ENST00000696400.1:ENST00000403295.8:ENST00000696492.1:ENST00000427708.7:ENST00000696314.1:ENST00000696315.1:ENST00000696454.1:ENST00000696508.1:ENST00000696548.1:ENST00000696542.1:ENST00000696319.1:ENST00000403676.6:ENST00000696433.1:ENST00000696434.1:ENST00000696499.1:ENST00000696564.1:ENST00000402135.8:ENST00000696546.1:ENST00000233741.9:ENST00000696316.1:ENST00000696378.1:ENST00000696435.1:ENST00000696493.1:ENST00000696543.1:ENST00000696544.1:ENST00000696545.1:ENST00000696565.1:ENST00000696620.1:ENST00000696621.1:ENST00000696635.1:ENST00000696364.1:ENST00000696634.1:ENST00000696317.1:ENST00000696622.1:ENST00000696467.1:ENST00000696547.1:ENST00000449070.6:ENST00000696305.1:ENST00000417361.2:ENST00000696338.1:ENST00000696361.1:ENST00000696318.1:ENST00000696371.1:ENST00000696409.1:ENST00000696410.1:ENST00000696455.1:ENST00000696468.1:ENST00000696527.1:ENST00000696567.1:ENST00000696324.1:ENST00000696566.1:ENST00000696623.1:ENST00000446381.6:ENST00000696469.1:ENST00000696624.1:ENST00000696411.1:ENST00000470506.2:ENST00000696358.1:ENST00000696373.1:ENST00000696394.1:ENST00000696320.1:ENST00000696395.1:ENST00000696341.1:ENST00000696340.1:ENST00000696374.1:ENST00000696342.1:ENST00000696325.1:ENST00000696399.1:ENST00000696398.1:ENST00000696306.1:ENST00000696344.1:ENST00000696343.1:ENST00000696362.1:ENST00000696528.1:ENST00000696326.1:ENST00000696625.1:ENST00000696510.1:ENST00000696438.1:ENST00000696496.1:ENST00000696509.1:ENST00000696569.1:ENST00000696457.1:ENST00000696458.1:ENST00000696473.1:ENST00000696495.1:ENST00000696415.1:ENST00000696472.1:ENST00000696459.1:ENST00000696416.1:ENST00000696530.1:ENST00000696460.1:ENST00000696570.1:ENST00000696531.1:ENST00000696307.1:ENST00000696345.1:ENST00000696377.1:ENST00000696417.1:ENST00000696594.1:ENST00000696595.1:ENST00000696379.1:ENST00000696346.1:ENST00000696380.1:ENST00000696347.1:ENST00000696461.1:ENST00000696596.1:ENST00000696549.1:ENST00000696597.1:ENST00000696550.1:ENST00000696598.1:ENST00000696321.1:ENST00000696476.1:ENST00000696477.1:ENST00000696511.1:ENST00000481670.3:ENST00000696403.1:ENST00000696551.1:ENST00000696308.1:ENST00000696418.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	36	2	2.5055	3.40043	4.29536	0.0590175	0.0359431	0.167915	0.152322
chr3	45693874	45693974	1417083	0	+	0.27	[0,0.28]	chr3	148654	31	INTRON	INTRON	SACM1L	ENSG00000211456.13	ENST00000464524.5:ENST00000455997.5:ENST00000418611.5:ENST00000672477.1:ENST00000463237.5:ENST00000441228.5:ENST00000463347.5:ENST00000438671.3:ENST00000389061.10:ENST00000445499.2:ENST00000478586.3:ENST00000672858.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	36	2	2.5055	3.40043	4.29536	0.0590175	0.0359431	0.167915	0.152322
chr8	51856062	51856162	3946161	0	-	0.22	[0,0.28]	chr8	362026	56	INTRON	INTRON	PCMTD1	ENSG00000168300.14	ENST00000544451.2:ENST00000360540.9:ENST00000522514.6:ENST00000519559.1:ENST00000519975.1:ENST00000521344.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	36	2	2.5055	3.40043	4.29536	0.0590175	0.0359431	0.167915	0.152322
chr9	4796918	4797018	4094905	0	+	0.24	[0,0.28]	chr9	373155	33	INTRON	INTRON	RCL1	ENSG00000120158.12	ENST00000381750.9:ENST00000381732.3:ENST00000442869.5:ENST00000473230.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	36	2	2.5055	3.40043	4.29536	0.0590175	0.0359431	0.167915	0.152322
chr12	111681336	111681436	5413642	0	-	0.35	(0.32,0.35]	chr12	517008	3	SS5_PROX	SS5_PROX:INTRON	BRAP	ENSG00000089234.16	ENST00000419234.9:ENST00000327551.6	protein_coding	protein_coding	protein_coding	protein_coding	3	51	2	1.61669	3.40042	5.18415	0.0578816	0.00333629	0.188651	0.0512081
chr3	171425735	171425835	1867105	0	-	0.48	(0.476,0.515]	chr3	186991	557	INTRON	INTRON	TNIK	ENSG00000154310.17	ENST00000436636.7:ENST00000341852.10:ENST00000284483.12:ENST00000475336.5:ENST00000357327.9:ENST00000460047.5:ENST00000488470.5:ENST00000470834.5:ENST00000465393.1	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	2.69967	3.4004000000000003	4.10113	0.0226984	0.0195838	0.124921	0.109483
chr12	45727477	45727576	5314869	0	-	0.747475	(0.57,1]	chr12	505540	96	EXON_LNCRNA	EXON_LNCRNA	ENSG00000273015	ENSG00000273015.2	ENST00000609803.2	lncRNA	lncRNA	lncRNA	lncRNA	2	26	2	2.23711	3.40038	4.56365	0.0172108	0.00129848	0.104099	0.0333764
chr17	67738547	67738643	6667631	0	+	0.614583	(0.57,1]	chr17	650514	3	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NOL11	ENSG00000130935.10	ENST00000253247.9:ENST00000581375.5:ENST00000583108.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	26	2	2.23711	3.40038	4.56365	0.0172108	0.00129848	0.104099	0.0333764
chr1	246189810	246189909	677532	0	-	0.363636	(0.35,0.378]	chr1	79729	8	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000391836.3:ENST00000453676.5:ENST00000462422.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	33	2	2.39939	3.400335	4.40128	0.0458078	0.0120289	0.149888	0.0962115
chr2	161336837	161336937	901396	0	+	0.37	(0.35,0.378]	chr2	99704	176	INTRON	INTRON	PSMD14	ENSG00000115233.12	ENST00000409682.8:ENST00000437630.1	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	2.39939	3.400335	4.40128	0.0458078	0.0120289	0.149888	0.0962115
chr21	7439727	7439827	7365700	0	+	0.36	(0.35,0.378]	chr21	751728	85	INTRON	INTRON	ENSG00000276077	ENSG00000276077.4	ENST00000617062.4:ENST00000625096.3:ENST00000624791.1:ENST00000624907.3:ENST00000624461.3:ENST00000625115.1	lncRNA	lncRNA	lncRNA	lncRNA	1	33	2	2.39939	3.400335	4.40128	0.0458078	0.0120289	0.149888	0.0962115
chr7	121062465	121062564	3394379	0	+	0.363636	(0.35,0.378]	chr7	317696	106	INTRON	INTRON	CPED1	ENSG00000106034.18	ENST00000310396.10:ENST00000428526.5:ENST00000450913.6:ENST00000520801.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	33	2	2.39939	3.400335	4.40128	0.0458078	0.0120289	0.149888	0.0962115
chrX	44910185	44910285	7648972	0	+	0.52	(0.515,0.57]	chrX	782726	358	INTRON	INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000675440.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000621147.5:ENST00000475233.1:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	162	2	2.87009	3.4002999999999997	3.93051	1.49863e-4	2.79352e-7	0.011202	2.62608e-4
chr5	66144921	66145008	2372493	0	+	0.586207	(0.57,1]	chr5	228646	2	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	SREK1	ENSG00000153914.16	ENST00000521691.5:ENST00000612404.4:ENST00000523851.1:ENST00000334121.11:ENST00000520058.1:ENST00000520953.5:ENST00000522912.5:ENST00000524111.5:ENST00000380918.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	12	163	2	2.9605	3.400255	3.84001	2.80121e-6	7.45067e-9	0.00107271	2.27718e-5
chr6	107279124	107279224	3180108	0	-	0.55	(0.515,0.57]	chr6	296340	45	INTRON	INTRON	PDSS2	ENSG00000164494.12	ENST00000369037.9:ENST00000369031.4	protein_coding	protein_coding	protein_coding	protein_coding	3	43	2	2.11724	3.4001699999999997	4.6831	0.0110335	0.00471288	0.0927187	0.0600108
chr4	67472875	67472975	2152769	0	-	0.29	(0.28,0.32]	chr4	211906	2	SS3_PROX	SS3_PROX:INTRON	CENPC	ENSG00000145241.11	ENST00000273853.11:ENST00000513216.5:ENST00000506882.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	46	2	2.28998	3.399895	4.50981	0.0275554	0.0166401	0.123904	0.110511
chr4	143354231	143354331	2054247	0	+	0.29	(0.28,0.32]	chr4	203721	103	INTRON	INTRON	GAB1	ENSG00000109458.9	ENST00000262995.8:ENST00000262994.9:ENST00000514639.5	protein_coding	protein_coding	protein_coding	protein_coding	2	46	2	2.28998	3.399895	4.50981	0.0275554	0.0166401	0.123904	0.110511
chr5	151777834	151777934	2521853	0	+	0.3	(0.28,0.32]	chr5	241289	1	SS5_PROX	SS5_PROX:INTRON	G3BP1	ENSG00000145907.16	ENST00000523519.5:ENST00000520578.6:ENST00000627077.2:ENST00000678976.1:ENST00000677408.1:ENST00000678070.1:ENST00000678964.1:ENST00000678925.1:ENST00000394123.7:ENST00000676978.1:ENST00000679289.1:ENST00000677493.1:ENST00000676644.1:ENST00000677757.1:ENST00000522761.6:ENST00000677909.1:ENST00000676827.1:ENST00000520177.6:ENST00000676634.1:ENST00000678854.1:ENST00000677602.1:ENST00000519832.1:ENST00000518726.5:ENST00000676911.1:ENST00000356245.8:ENST00000678646.1:ENST00000677381.1:ENST00000678904.1:ENST00000678910.1:ENST00000678101.1:ENST00000677105.1:ENST00000676813.1:ENST00000522367.6:ENST00000517947.5:ENST00000507878.7:ENST00000520006.2:ENST00000678369.1:ENST00000677433.1:ENST00000678564.1:ENST00000677252.1:ENST00000677369.1:ENST00000677284.1:ENST00000676894.1:ENST00000677923.1:ENST00000677323.1:ENST00000522666.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	46	2	2.28998	3.399895	4.50981	0.0275554	0.0166401	0.123904	0.110511
chr11	120338573	120338673	4876221	0	+	0.35	(0.32,0.35]	chr11	455798	9	INTRON	INTRON	ARHGEF12	ENSG00000196914.9	ENST00000397843.7:ENST00000356641.7	protein_coding	protein_coding	protein_coding	protein_coding	4	133	2	3.27129	3.3998150000000003	3.52834	4.56534e-4	6.94567e-5	0.0196892	0.00690574
chr9	83977886	83977955	4274325	0	-	0.376812	(0.35,0.378]	chr9	393175	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HNRNPK	ENSG00000165119.21	ENST00000376281.8:ENST00000376263.8:ENST00000351839.7:ENST00000360384.9:ENST00000457156.5:ENST00000472778.5:ENST00000483135.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	55	2	1.83633	3.3998150000000003	4.9633	0.0335602	0.00198929	0.134145	0.0411469
chr10	5769206	5769297	4544472	0	-	0.351648	(0.35,0.378]	chr10	419765	10	EXON_LNCRNA	EXON_LNCRNA:INTRON	GDI2	ENSG00000057608.17	ENST00000380191.9:ENST00000479928.1:ENST00000447751.5:ENST00000380181.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	49	2	1.87586	3.399705	4.92355	0.0268864	0.00573514	0.135275	0.0657377
chr7	75517119	75517219	3559041	0	-	0.39	(0.378,0.408]	chr7	331602	5	INTRON	INTRON	PMS2P3	ENSG00000127957.19	ENST00000693762.1:ENST00000394921.8:ENST00000430602.5:ENST00000418756.5:ENST00000437568.6:ENST00000533167.5:ENST00000691440.1:ENST00000422064.1:ENST00000438326.2	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript	2	66	2	3.23708	3.3995800000000003	3.56208	0.00365053	6.94246e-4	0.0535094	0.0240761
chr12	50452562	50452661	5136863	0	+	0.353535	(0.35,0.378]	chr12	484418	106	INTRON	INTRON	LARP4	ENSG00000161813.23	ENST00000293618.12:ENST00000429001.7:ENST00000398473.7:ENST00000522085.5:ENST00000518444.5:ENST00000518561.5:ENST00000347328.9:ENST00000520064.2:ENST00000521120.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	49	2	1.58862	3.3994	5.21018	0.0615516	0.00228003	0.193423	0.0426265
chr1	12348973	12349068	29466	0	+	0.378947	(0.378,0.408]	chr1	3627	1	EXON_MRNA	EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	VPS13D	ENSG00000048707.15	ENST00000620676.6:ENST00000613099.4:ENST00000011700.10:ENST00000646917.1:ENST00000460333.5:ENST00000469054.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	40	2	2.29798	3.39927	4.50056	0.015974	0.0147606	0.106702	0.101453
chr12	112039028	112039128	5414699	0	-	0.39	(0.378,0.408]	chr12	517126	4	SS5_PROX	SS5_PROX:INTRON	NAA25	ENSG00000111300.10	ENST00000261745.9:ENST00000552527.5:ENST00000549711.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	40	2	2.29798	3.39927	4.50056	0.015974	0.0147606	0.106702	0.101453
chr22	29970475	29970575	7498401	0	+	0.4	(0.378,0.408]	chr22	765028	1	SS3_PROX	SS3_PROX:INTRON	MTMR3	ENSG00000100330.16	ENST00000333027.7:ENST00000401950.7:ENST00000495098.5:ENST00000445401.5:ENST00000323630.9:ENST00000351488.7:ENST00000415511.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	40	2	2.29798	3.39927	4.50056	0.015974	0.0147606	0.106702	0.101453
chr3	43705764	43705863	1410328	0	+	0.393939	(0.378,0.408]	chr3	147937	28	INTRON	INTRON	ABHD5	ENSG00000011198.10	ENST00000643520.1:ENST00000458276.7:ENST00000649763.1:ENST00000643140.1:ENST00000643500.1:ENST00000644371.2:ENST00000013894.3:ENST00000646378.1:ENST00000643477.1:ENST00000646799.1:ENST00000454293.2:ENST00000642351.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	40	2	2.29798	3.39927	4.50056	0.015974	0.0147606	0.106702	0.101453
chr1	12302729	12302827	28978	0	+	0.285714	(0.28,0.32]	chr1	3512	30	INTRON	INTRON	VPS13D	ENSG00000048707.15	ENST00000620676.6:ENST00000613099.4:ENST00000011700.10:ENST00000646917.1:ENST00000460333.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	33	2	2.46018	3.3989149999999997	4.33765	0.039714	0.0375904	0.156054	0.143072
chr1	45807466	45807565	93850	0	+	0.30303	(0.28,0.32]	chr1	12684	30	INTRON	INTRON	MAST2	ENSG00000086015.23	ENST00000470809.1:ENST00000361297.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	33	2	2.46018	3.3989149999999997	4.33765	0.039714	0.0375904	0.156054	0.143072
chr1	52391381	52391479	456936	0	-	0.316327	(0.28,0.32]	chr1	54887	17	INTRON	INTRON	ORC1	ENSG00000085840.13	ENST00000371568.8:ENST00000371566.1	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	2.46018	3.3989149999999997	4.33765	0.039714	0.0375904	0.156054	0.143072
chr18	188969	189068	6855134	0	+	0.282828	(0.28,0.32]	chr18	679521	83	INTRON	INTRON	USP14	ENSG00000101557.15	ENST00000582707.5:ENST00000400266.7:ENST00000261601.8:ENST00000578942.5:ENST00000383589.6:ENST00000583119.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	33	2	2.46018	3.3989149999999997	4.33765	0.039714	0.0375904	0.156054	0.143072
chr2	30478227	30478327	727130	0	+	0.32	(0.28,0.32]	chr2	83978	12	INTRON	INTRON	LCLAT1	ENSG00000172954.14	ENST00000466477.5:ENST00000465200.5:ENST00000319406.8:ENST00000379509.8:ENST00000491680.6:ENST00000488144.5:ENST00000465538.5:ENST00000309052.8:ENST00000478015.5:ENST00000476038.5:ENST00000497423.1:ENST00000476535.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	33	2	2.46018	3.3989149999999997	4.33765	0.039714	0.0375904	0.156054	0.143072
chr2	131136888	131136987	864721	0	+	0.292929	(0.28,0.32]	chr2	97154	35	INTRON	INTRON	PLEKHB2	ENSG00000115762.17	ENST00000403716.5:ENST00000439822.6:ENST00000409158.5:ENST00000234115.10:ENST00000628582.2:ENST00000693505.1:ENST00000438882.6:ENST00000404460.5:ENST00000409612.5:ENST00000409279.1	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	2.46018	3.3989149999999997	4.33765	0.039714	0.0375904	0.156054	0.143072
chr4	94545605	94545704	1999323	0	+	0.282828	(0.28,0.32]	chr4	199560	214	INTRON	INTRON	PDLIM5	ENSG00000163110.15	ENST00000437932.5:ENST00000615540.4:ENST00000318007.9:ENST00000380180.7:ENST00000514830.5:ENST00000509333.5:ENST00000503974.5:ENST00000317968.9:ENST00000627587.2:ENST00000542407.5:ENST00000514743.5:ENST00000508216.5:ENST00000511767.3:ENST00000510099.5:ENST00000509357.5:ENST00000513341.5:ENST00000508531.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	33	2	2.46018	3.3989149999999997	4.33765	0.039714	0.0375904	0.156054	0.143072
chr5	157820046	157820146	2758264	0	-	0.31	(0.28,0.32]	chr5	260304	21	INTRON	INTRON	CLINT1	ENSG00000113282.14	ENST00000523094.5:ENST00000411809.7:ENST00000530742.5:ENST00000523908.5	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	2.46018	3.3989149999999997	4.33765	0.039714	0.0375904	0.156054	0.143072
chr7	10589864	10589964	3482678	0	-	0.32	(0.28,0.32]	chr7	325772	279	INTRON	INTRON	MGC4859	ENSG00000283117.1	ENST00000634803.1	lncRNA	lncRNA	lncRNA	lncRNA	1	33	2	2.46018	3.3989149999999997	4.33765	0.039714	0.0375904	0.156054	0.143072
chr7	128604017	128604117	3408089	0	+	0.3	(0.28,0.32]	chr7	318364	116	INTRON	INTRON	ENSG00000280828:ENSG00000242588	ENSG00000280828.1:ENSG00000242588.6	ENST00000479267.2:ENST00000605862.5	lncRNA	lncRNA	lncRNA:unprocessed_pseudogene	lncRNA:unprocessed_pseudogene	1	33	2	2.46018	3.3989149999999997	4.33765	0.039714	0.0375904	0.156054	0.143072
chr16	31893736	31893835	6342007	0	+	0.40404	(0.378,0.408]	chr16	608570	31	INTRON	INTRON	ZNF267	ENSG00000185947.15	ENST00000300870.15:ENST00000394846.7:ENST00000566541.5:ENST00000561814.1:ENST00000562971.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	52	2	1.68393	3.39854	5.11315	0.0503034	9.26795e-4	0.156383	0.0278442
chr2	108574891	108574990	846251	0	+	0.353535	(0.35,0.378]	chr2	94665	37	INTRON	INTRON	LIMS1	ENSG00000169756.17	ENST00000695516.1:ENST00000544547.6:ENST00000695517.1:ENST00000695518.1	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	2.72497	3.398415	4.07186	0.0279478	0.0198266	0.137011	0.109608
chrX	134771844	134771942	7893241	0	-	0.306122	(0.28,0.32]	chrX	803513	6	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PABIR2	ENSG00000156504.17	ENST00000343004.10:ENST00000370790.5:ENST00000298090.10:ENST00000478384.5:ENST00000486347.5:ENST00000465128.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	164	2	2.42463	3.3983550000000005	4.37208	0.00107687	4.43779e-5	0.0300133	0.00572669
chr11	118632976	118633074	4873691	0	+	0.418367	(0.408,0.44]	chr11	455298	8	EXON_MRNA	EXON_MRNA:INTRON	PHLDB1	ENSG00000019144.20	ENST00000361417.6:ENST00000530994.5:ENST00000600882.6:ENST00000528594.5:ENST00000356063.9:ENST00000532517.5:ENST00000614369.4:ENST00000527898.5:ENST00000534140.2:ENST00000612681.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	31	2	2.36073	3.3982650000000003	4.4358	0.0481658	0.00893097	0.153019	0.0849778
chr16	48348490	48348590	6346804	0	+	0.44	(0.408,0.44]	chr16	609146	2	SS5_PROX	SS5_PROX:INTRON	LONP2	ENSG00000102910.14	ENST00000285737.9:ENST00000535754.5:ENST00000566755.5:ENST00000565867.2:ENST00000564259.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	31	2	2.36073	3.3982650000000003	4.4358	0.0481658	0.00893097	0.153019	0.0849778
chr22	35990154	35990254	7583615	0	-	0.42	(0.408,0.44]	chr22	775907	286	INTRON	INTRON	RBFOX2	ENSG00000100320.24	ENST00000438146.7:ENST00000695854.1	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	2.36073	3.3982650000000003	4.4358	0.0481658	0.00893097	0.153019	0.0849778
chr3	14973187	14973287	1372037	0	+	0.41	(0.408,0.44]	chr3	144608	103	INTRON	INTRON	NR2C2	ENSG00000177463.16	ENST00000425241.6:ENST00000413118.5:ENST00000435454.5:ENST00000323373.10:ENST00000475707.5:ENST00000393102.7:ENST00000437120.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	31	2	2.36073	3.3982650000000003	4.4358	0.0481658	0.00893097	0.153019	0.0849778
chr5	74703335	74703433	2390467	0	+	0.438776	(0.408,0.44]	chr5	230791	59	INTRON	INTRON	HEXB	ENSG00000049860.14	ENST00000511181.5:ENST00000513079.5:ENST00000261416.12:ENST00000510820.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	31	2	2.36073	3.3982650000000003	4.4358	0.0481658	0.00893097	0.153019	0.0849778
chr5	69656561	69656661	2637299	0	-	0.55	(0.515,0.57]	chr5	250516	101	INTRON	INTRON	GUSBP3	ENSG00000253203.6	ENST00000513408.6:ENST00000509348.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	2	35	2	2.11313	3.3981149999999998	4.6831	0.0256725	0.00471288	0.133676	0.0600108
chr16	23496278	23496377	6464445	0	-	0.373737	(0.35,0.378]	chr16	623900	1	INTRON	INTRON	GGA2	ENSG00000103365.15	ENST00000309859.8:ENST00000567468.5:ENST00000570111.5:ENST00000568799.1:ENST00000563494.5:ENST00000569300.5:ENST00000569189.2:ENST00000563047.1:ENST00000562944.5:ENST00000562117.1:ENST00000566547.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	143	2	2.12887	3.398095	4.66732	0.00471873	1.65803e-6	0.0600445	7.78387e-4
chr1	1474581	1474681	1593	0	+	0.54	(0.515,0.57]	chr1	364	21	INTRON	INTRON	ATAD3B	ENSG00000160072.20	ENST00000673477.1:ENST00000308647.8	protein_coding	protein_coding	protein_coding	protein_coding	2	35	2	2.03361	3.3980249999999996	4.76244	0.0325854	0.00362147	0.145164	0.0533855
chr16	15673369	15673467	6307118	0	+	0.520408	(0.515,0.57]	chr16	603432	2	INTRON	INTRON	NDE1	ENSG00000072864.16	ENST00000396355.5:ENST00000674888.1:ENST00000675171.1:ENST00000675951.1:ENST00000674900.1:ENST00000674588.1:ENST00000674538.1:ENST00000396354.6:ENST00000675926.1:ENST00000570727.5:ENST00000573203.5:ENST00000674995.1:ENST00000674554.1:ENST00000674581.1:ENST00000577101.6:ENST00000572756.6:ENST00000574163.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	35	2	2.03361	3.3980249999999996	4.76244	0.0325854	0.00362147	0.145164	0.0533855
chr17	39521483	39521583	6607596	0	+	0.57	(0.515,0.57]	chr17	643318	10	INTRON	INTRON	CDK12	ENSG00000167258.15	ENST00000447079.6:ENST00000584632.5:ENST00000430627.6	protein_coding	protein_coding	protein_coding	protein_coding	2	35	2	2.03361	3.3980249999999996	4.76244	0.0325854	0.00362147	0.145164	0.0533855
chr12	110041874	110041974	5408540	0	-	0.37	(0.35,0.378]	chr12	516345	8	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	C12orf76	ENSG00000174456.16	ENST00000546651.3:ENST00000309050.9:ENST00000615315.2:ENST00000687999.1:ENST00000687036.1:ENST00000685920.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	41	2	2.23043	3.397965	4.5655	0.0187487	0.0155464	0.117523	0.100909
chr20	31769644	31769743	7253968	0	+	0.373737	(0.35,0.378]	chr20	736751	26	INTRON	INTRON	TPX2	ENSG00000088325.16	ENST00000340513.4:ENST00000300403.11	protein_coding	protein_coding	protein_coding	protein_coding	2	41	2	2.23043	3.397965	4.5655	0.0187487	0.0155464	0.117523	0.100909
chr8	90017826	90017923	3791928	0	+	0.28866000000000003	(0.28,0.32]	chr8	351713	1	INTRON	INTRON	DECR1	ENSG00000104325.7	ENST00000519328.5:ENST00000517314.5:ENST00000521603.5:ENST00000523447.5:ENST00000517597.5:ENST00000519410.5:ENST00000220764.7:ENST00000522161.5:ENST00000519007.5:ENST00000518725.5:ENST00000517761.5:ENST00000520227.1:ENST00000522583.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	149	2	2.45634	3.39796	4.33958	0.0016783	5.19581e-5	0.0380861	0.00627105
chr20	25446950	25447046	7250871	0	+	0.25	[0,0.28]	chr20	736395	11	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	GINS1	ENSG00000101003.11	ENST00000696810.1:ENST00000696806.1:ENST00000262460.5:ENST00000696862.1:ENST00000696807.1:ENST00000696874.1:ENST00000696870.1:ENST00000696893.1:ENST00000696894.1:ENST00000696875.1:ENST00000696876.1:ENST00000696814.1:ENST00000696878.1:ENST00000696813.1:ENST00000696793.1:ENST00000696877.1:ENST00000696895.1:ENST00000696896.1:ENST00000696808.1:ENST00000481735.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	91	2	3.3753	3.39795	3.4206	0.00322364	0.00242466	0.0507087	0.0454587
chr1	51764239	51764338	100887	0	+	0.292929	(0.28,0.32]	chr1	13345	19	INTRON	INTRON	OSBPL9	ENSG00000117859.19	ENST00000371714.5:ENST00000428468.6:ENST00000447887.5:ENST00000495776.5:ENST00000435274.6:ENST00000453295.5:ENST00000489990.5:ENST00000532975.5:ENST00000531828.5:ENST00000361556.9:ENST00000526917.5:ENST00000462759.5:ENST00000486942.5:ENST00000528603.5:ENST00000475697.5:ENST00000531061.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	36	2	2.18975	3.397925	4.6061	0.0776042	0.0102724	0.196285	0.089002
chr1	113807916	113808015	525903	0	-	0.30303	(0.28,0.32]	chr1	61864	95	INTRON	INTRON	RSBN1	ENSG00000081019.14	ENST00000261441.9:ENST00000612242.4:ENST00000476412.5:ENST00000615321.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	36	2	2.18975	3.397925	4.6061	0.0776042	0.0102724	0.196285	0.089002
chr10	87121071	87121171	4481503	0	+	0.32	(0.28,0.32]	chr10	412411	237	INTRON	INTRON	SHLD2	ENSG00000122376.12	ENST00000437629.6:ENST00000298784.5:ENST00000298786.5	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	2.18975	3.397925	4.6061	0.0776042	0.0102724	0.196285	0.089002
chr11	77808325	77808425	4995853	0	-	0.31	(0.28,0.32]	chr11	472047	433	INTRON	INTRON	RSF1	ENSG00000048649.14	ENST00000308488.11:ENST00000528095.5:ENST00000440064.2:ENST00000467567.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	36	2	2.18975	3.397925	4.6061	0.0776042	0.0102724	0.196285	0.089002
chr12	39658043	39658143	5110984	0	+	0.32	(0.28,0.32]	chr12	482635	73	INTRON	INTRON	C12orf40	ENSG00000180116.15	ENST00000405531.7:ENST00000324616.9:ENST00000468200.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	36	2	2.18975	3.397925	4.6061	0.0776042	0.0102724	0.196285	0.089002
chr4	39324307	39324404	2128846	0	-	0.309278	(0.28,0.32]	chr4	209858	5	INTRON	INTRON	RFC1	ENSG00000035928.17	ENST00000381897.5:ENST00000349703.7:ENST00000418436.5:ENST00000504849.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	36	2	2.18975	3.397925	4.6061	0.0776042	0.0102724	0.196285	0.089002
chr7	110833402	110833502	3616811	0	-	0.32	(0.28,0.32]	chr7	337078	1077	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000487733.5:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	36	2	2.18975	3.397925	4.6061	0.0776042	0.0102724	0.196285	0.089002
chr8	99025029	99025129	3811375	0	+	0.29	(0.28,0.32]	chr8	353059	107	INTRON	INTRON	VPS13B	ENSG00000132549.20	ENST00000496144.5:ENST00000683334.1:ENST00000682853.1:ENST00000357162.7:ENST00000358544.7:ENST00000683619.1:ENST00000441350.2:ENST00000684269.1:ENST00000682806.1:ENST00000683869.1:ENST00000682153.1:ENST00000682358.1:ENST00000682145.1:ENST00000355155.6:ENST00000682234.1:ENST00000683486.1:ENST00000684308.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	36	2	2.18975	3.397925	4.6061	0.0776042	0.0102724	0.196285	0.089002
chr4	870125	870210	2093646	0	-	0.470588	(0.44,0.476]	chr4	206878	3	INTRON	INTRON	GAK	ENSG00000178950.18	ENST00000314167.9:ENST00000511163.5:ENST00000509566.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	39	2	2.27304	3.39787	4.5227	0.0158915	0.0128818	0.109464	0.0926667
chr5	119117131	119117230	2460231	0	+	0.464646	(0.44,0.476]	chr5	235625	4	INTRON	INTRON	DMXL1	ENSG00000172869.15	ENST00000539542.6:ENST00000503802.5:ENST00000311085.8:ENST00000514151.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	39	2	2.27304	3.39787	4.5227	0.0158915	0.0128818	0.109464	0.0926667
chr6	37308324	37308424	2855823	0	+	0.46	(0.44,0.476]	chr6	269985	166	INTRON	INTRON	TBC1D22B	ENSG00000065491.8	ENST00000373491.3	protein_coding	protein_coding	protein_coding	protein_coding	2	39	2	2.27304	3.39787	4.5227	0.0158915	0.0128818	0.109464	0.0926667
chr10	27116845	27116921	4585897	0	-	0.223684	[0,0.28]	chr10	422689	1	INTRON	INTRON	YME1L1	ENSG00000136758.20	ENST00000376016.8:ENST00000613434.4:ENST00000326799.7	protein_coding	protein_coding	protein_coding	protein_coding	2	52	2	2.41169	3.39778	4.38387	0.0501911	0.0122872	0.156383	0.0970106
chr3	179202320	179202414	1566345	0	+	0.553191	(0.515,0.57]	chr3	161921	4	INTRON	INTRON	PIK3CA	ENSG00000121879.6	ENST00000263967.4:ENST00000643187.1:ENST00000675786.1:ENST00000675467.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	37	2	1.8707	3.3977150000000003	4.92473	0.0523213	0.00108255	0.160182	0.0300133
chr7	77844083	77844182	3344405	0	+	0.525253	(0.515,0.57]	chr7	311490	34	INTRON	INTRON	PHTF2	ENSG00000006576.17	ENST00000422959.7:ENST00000416283.6:ENST00000307305.12:ENST00000424760.5:ENST00000415251.6:ENST00000275575.11:ENST00000450574.5:ENST00000248550.7	protein_coding	protein_coding	protein_coding	protein_coding	2	37	2	1.8707	3.3977150000000003	4.92473	0.0523213	0.00108255	0.160182	0.0300133
chr16	18784640	18784733	6456618	0	-	0.301075	(0.28,0.32]	chr16	622510	11	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	RPS15A	ENSG00000134419.15	ENST00000322989.8:ENST00000572008.5:ENST00000563390.5:ENST00000574723.5:ENST00000576008.5:ENST00000562935.5:ENST00000569365.6:ENST00000576436.5:ENST00000575669.1:ENST00000565420.5:ENST00000563579.1:ENST00000569083.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	50	2	1.96376	3.3977049999999998	4.83165	0.0480066	0.00527257	0.153019	0.0656295
chr3	138562024	138562124	1829311	0	-	0.33	(0.32,0.35]	chr3	183871	243	INTRON	INTRON	CEP70	ENSG00000114107.9	ENST00000264982.8:ENST00000489254.5:ENST00000484888.5:ENST00000474781.5:ENST00000481834.5:ENST00000468900.5:ENST00000462419.5:ENST00000478673.5:ENST00000464035.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	101	2	2.53107	3.397685	4.2643	0.00860484	2.41647e-5	0.0784134	0.00385018
chr3	156543953	156544038	1844397	0	-	0.423529	(0.408,0.44]	chr3	185577	1	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	SSR3	ENSG00000114850.7	ENST00000265044.7:ENST00000467789.5:ENST00000476217.5:ENST00000498205.5:ENST00000478842.5:ENST00000464138.1:ENST00000463503.5:ENST00000496050.1:ENST00000467733.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	53	2	1.55035	3.39768	5.24501	0.0455214	0.00137378	0.164236	0.0336718
chr19	40279639	40279737	7183695	0	-	0.520408	(0.515,0.57]	chr19	726531	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	AKT2	ENSG00000105221.18	ENST00000392038.7:ENST00000424901.5:ENST00000391844.8:ENST00000584288.5:ENST00000579047.5:ENST00000487537.3:ENST00000486368.6:ENST00000596634.5:ENST00000452077.5:ENST00000578123.5:ENST00000672890.1:ENST00000423127.5:ENST00000358335.9:ENST00000456441.5:ENST00000583859.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	208	2	2.93005	3.39763	3.86521	7.69268e-6	8.83044e-7	0.00197882	5.75788e-4
chr8	130007533	130007633	4063843	0	-	0.56	(0.515,0.57]	chr8	369844	362	INTRON	INTRON	CYRIB	ENSG00000153310.21	ENST00000694912.1:ENST00000523288.5:ENST00000519110.5:ENST00000401979.6:ENST00000523509.5:ENST00000517654.5:ENST00000518879.5:ENST00000522702.5:ENST00000521223.5:ENST00000518283.5:ENST00000523993.5:ENST00000519020.5:ENST00000518167.5:ENST00000522361.1:ENST00000523514.1:ENST00000518285.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	37	2	1.9459	3.39763	4.84936	0.0429089	0.00146032	0.148082	0.0349875
chr1	204552858	204552957	297797	0	+	0.414141	(0.408,0.44]	chr1	34331	33	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	MDM4	ENSG00000198625.14	ENST00000367183.7:ENST00000391947.6:ENST00000454264.6:ENST00000612738.4:ENST00000614459.4:ENST00000616250.4:ENST00000367182.8:ENST00000463049.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	190	2	2.91766	3.3976	3.87754	2.19663e-5	1.25094e-5	0.00364987	0.00281284
chr13	19704975	19705068	5552158	0	-	0.354839	(0.35,0.378]	chr13	530684	13	INTRON	INTRON	PSPC1	ENSG00000121390.19	ENST00000471658.5:ENST00000492741.5:ENST00000635562.1:ENST00000338910.9:ENST00000619300.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	43	2	2.49643	3.3974100000000003	4.29839	0.0294717	0.00752974	0.128055	0.0773151
chr1	50783805	50783905	450488	0	-	0.46	(0.44,0.476]	chr1	54249	387	INTRON	INTRON	FAF1	ENSG00000185104.21	ENST00000396153.7:ENST00000487898.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	31	2	2.46135	3.397405	4.33346	0.0374637	0.0120349	0.140008	0.0962115
chr10	38013431	38013528	4426919	0	+	0.453608	(0.44,0.476]	chr10	407986	7	INTRON	INTRON	ZNF33A	ENSG00000189180.16	ENST00000307441.13:ENST00000374618.7:ENST00000628825.2:ENST00000458705.6:ENST00000432900.7:ENST00000469037.2:ENST00000476504.5:ENST00000478556.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	31	2	2.46135	3.397405	4.33346	0.0374637	0.0120349	0.140008	0.0962115
chr10	125128835	125128935	4714022	0	-	0.47	(0.44,0.476]	chr10	434919	56	INTRON	INTRON	CTBP2	ENSG00000175029.17	ENST00000337195.9:ENST00000411419.6:ENST00000494626.6:ENST00000531469.5:ENST00000460976.5:ENST00000476817.1:ENST00000530884.1:ENST00000530930.1:ENST00000467395.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	31	2	2.46135	3.397405	4.33346	0.0374637	0.0120349	0.140008	0.0962115
chr11	66133653	66133753	4808505	0	+	0.45	(0.44,0.476]	chr11	447345	122	INTRON	INTRON	PACS1	ENSG00000175115.13	ENST00000320580.9:ENST00000527224.1:ENST00000533756.5:ENST00000527380.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	31	2	2.46135	3.397405	4.33346	0.0374637	0.0120349	0.140008	0.0962115
chr14	74001045	74001144	5921491	0	-	0.454545	(0.44,0.476]	chr14	562471	39	INTRON	INTRON	ENTPD5	ENSG00000187097.13	ENST00000557325.5:ENST00000334696.11:ENST00000556242.5:ENST00000554664.5:ENST00000556108.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	31	2	2.46135	3.397405	4.33346	0.0374637	0.0120349	0.140008	0.0962115
chr2	24510588	24510688	709450	0	+	0.47	(0.44,0.476]	chr2	82200	180	INTRON	INTRON	NCOA1	ENSG00000084676.16	ENST00000348332.8:ENST00000496333.5:ENST00000406961.5:ENST00000469850.5:ENST00000405141.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	31	2	2.46135	3.397405	4.33346	0.0374637	0.0120349	0.140008	0.0962115
chr20	44513283	44513378	7344971	0	-	0.463158	(0.44,0.476]	chr20	748670	3	SS3_PROX	SS3_PROX:INTRON	SERINC3	ENSG00000132824.14	ENST00000255175.5:ENST00000342374.5	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	2.46135	3.397405	4.33346	0.0374637	0.0120349	0.140008	0.0962115
chr1	145780039	145780139	540214	0	-	0.51	(0.476,0.515]	chr1	63364	63	INTRON	INTRON	RNF115	ENSG00000265491.5	ENST00000582693.5	protein_coding	protein_coding	protein_coding	protein_coding	4	53	2	1.53534	3.397395	5.25945	0.0476737	0.00111445	0.170116	0.0306328
chr3	197192125	197192225	1902441	0	-	0.41	(0.408,0.44]	chr3	190642	81	INTRON	INTRON	DLG1	ENSG00000075711.21	ENST00000667157.1:ENST00000346964.6:ENST00000656428.1:ENST00000663148.1:ENST00000655488.1:ENST00000357674.9:ENST00000671185.1:ENST00000658701.1:ENST00000667104.1:ENST00000661336.1:ENST00000669565.1:ENST00000670455.1:ENST00000656087.1:ENST00000670366.1:ENST00000653583.1:ENST00000661453.1:ENST00000665728.1:ENST00000664564.1:ENST00000660432.1:ENST00000660898.1:ENST00000657381.1:ENST00000659221.1:ENST00000654737.1:ENST00000669332.1:ENST00000659716.1:ENST00000664991.1:ENST00000419354.5:ENST00000661440.1:ENST00000667971.1:ENST00000670935.1:ENST00000668578.1:ENST00000666007.1:ENST00000661229.1:ENST00000661013.1:ENST00000436682.6:ENST00000662727.1:ENST00000422288.6:ENST00000448528.6:ENST00000656944.1:ENST00000392382.6:ENST00000450955.5:ENST00000658155.1:ENST00000669714.1:ENST00000654733.1:ENST00000469073.2:ENST00000419227.5:ENST00000392381.7:ENST00000471733.5:ENST00000419553.6:ENST00000661808.1:ENST00000453607.5:ENST00000456699.6:ENST00000392380.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	86	2	2.79124	3.397315	4.00339	0.00276922	7.25052e-5	0.0469265	0.00709818
chr1	27476994	27477094	406633	0	-	0.38	(0.378,0.408]	chr1	48986	477	INTRON	INTRON	WASF2	ENSG00000158195.11	ENST00000618852.5:ENST00000536657.1	protein_coding	protein_coding	protein_coding	protein_coding	4	54	2	1.5653	3.39727	5.22924	0.043739	0.00172721	0.162255	0.0374701
chr22	19091886	19091986	7551709	0	-	0.29	(0.28,0.32]	chr22	771903	20	INTRON	INTRON	DGCR2	ENSG00000070413.20	ENST00000537045.5:ENST00000545799.5:ENST00000263196.12:ENST00000389262.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	37	2	2.45545	3.39704	4.33863	0.0438092	0.0207276	0.14901	0.122348
chr4	87103932	87104031	1995498	0	+	0.292929	(0.28,0.32]	chr4	199082	86	INTRON	INTRON	AFF1	ENSG00000172493.23	ENST00000395146.9:ENST00000674009.1:ENST00000503477.5:ENST00000544085.6:ENST00000307808.10:ENST00000511722.5:ENST00000514970.2	protein_coding	protein_coding	protein_coding	protein_coding	1	37	2	2.45545	3.39704	4.33863	0.0438092	0.0207276	0.14901	0.122348
chr1	182867642	182867742	273277	0	+	0.42	(0.408,0.44]	chr1	31933	2	INTRON	INTRON	DHX9	ENSG00000135829.17	ENST00000367549.4	protein_coding	protein_coding	protein_coding	protein_coding	5	59	2	1.49789	3.397005	5.29612	0.0390091	0.00113523	0.161009	0.0307488
chr7	103297953	103298053	3373108	0	+	0.34	(0.32,0.35]	chr7	315695	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	PMPCB	ENSG00000105819.14	ENST00000249269.9:ENST00000428154.5:ENST00000456433.5:ENST00000443722.5:ENST00000444457.5:ENST00000498530.5:ENST00000453466.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	36	2	2.6321	3.39698	4.16186	0.0268	0.026079	0.133676	0.123349
chr3	44439288	44439388	1676335	0	-	0.4	(0.378,0.408]	chr3	171106	77	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	C3orf86:ZNF445	ENSG00000225873.4:ENSG00000185219.18	ENST00000636468.1:ENST00000637612.1:ENST00000396077.8	protein_coding	protein_coding	protein_coding:transcribed_unitary_pseudogene	protein_coding:processed_transcript	2	66	2	3.32016	3.396965	3.47377	0.00268328	0.00103087	0.0464781	0.0294094
chr19	12690573	12690665	7141063	0	-	0.48913	(0.476,0.515]	chr19	720612	4	SS3_PROX	SS3_PROX:INTRON	FBXW9	ENSG00000132004.13	ENST00000587296.1:ENST00000393261.8:ENST00000587955.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	43	2	2.26789	3.3969449999999997	4.526	0.0176567	0.00699701	0.105233	0.0754576
chr16	67638244	67638338	6368388	0	+	0.382979	(0.378,0.408]	chr16	611890	5	UTR3	UTR3:EXON_MRNA	CTCF	ENSG00000102974.16	ENST00000646076.1:ENST00000264010.10:ENST00000401394.6:ENST00000646771.1:ENST00000644753.1:ENST00000642819.1:ENST00000645306.1:ENST00000643892.1:ENST00000645699.1:ENST00000645409.1:ENST00000646566.1:ENST00000644950.1:ENST00000642420.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	108	2	2.76092	3.3969300000000002	4.03294	0.00102361	6.52685e-5	0.029231300000000002	0.00669119
chrX	111693961	111694061	7702146	0	+	0.15	[0,0.28]	chrX	788221	39	INTRON	INTRON	ALG13	ENSG00000101901.12	ENST00000487141.5:ENST00000394780.8:ENST00000251943.8:ENST00000610588.4:ENST00000621367.4:ENST00000622997.3:ENST00000624161.3:ENST00000636363.1:ENST00000624881.3:ENST00000495283.5:ENST00000486353.5:ENST00000623144.3:ENST00000470971.5:ENST00000623148.3:ENST00000471924.5:ENST00000436609.5:ENST00000470704.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	90	2	3.21543	3.39676	3.57809	0.00629013	0.00109779	0.0687434	0.0303708
chr1	19166821	19166921	386367	0	-	0.54	(0.515,0.57]	chr1	45999	4	SS5_PROX	SS5_PROX:INTRON	UBR4	ENSG00000127481.15	ENST00000375254.8:ENST00000417040.1:ENST00000419533.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	182	2	3.27135	3.396745	3.52214	4.41378e-5	3.97597e-7	0.00570424	3.26778e-4
chr21	44134254	44134354	7416280	0	+	0.48	(0.476,0.515]	chr21	756016	1	SS5_PROX	SS5_PROX:INTRON	GATD3	ENSG00000160221.18	ENST00000644251.1:ENST00000645487.1:ENST00000495007.5:ENST00000427803.6:ENST00000493883.5:ENST00000480786.1:ENST00000348499.9:ENST00000291577.11:ENST00000389690.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	85	2	2.93859	3.39672	3.85485	0.00143107	1.63076e-4	0.0340925	0.0109774
chr8	108240898	108240998	4023196	0	-	0.54	(0.515,0.57]	chr8	367680	9	EXON_MRNA	EXON_MRNA:INTRON	EIF3E	ENSG00000104408.11	ENST00000678042.1:ENST00000678773.1:ENST00000677409.1:ENST00000676892.1:ENST00000523674.2:ENST00000677674.1:ENST00000220849.10:ENST00000678937.1:ENST00000677084.1:ENST00000676706.1:ENST00000518100.6:ENST00000677040.1:ENST00000676698.1:ENST00000522352.6:ENST00000521297.2:ENST00000677501.1:ENST00000519030.6:ENST00000519627.2:ENST00000518345.2:ENST00000522445.6:ENST00000678334.1:ENST00000678023.1:ENST00000678797.1:ENST00000677614.1:ENST00000676642.1:ENST00000677965.1:ENST00000678901.1:ENST00000678243.1:ENST00000676663.1:ENST00000679198.1:ENST00000521614.6:ENST00000678004.1:ENST00000678881.1:ENST00000677590.1:ENST00000677272.1:ENST00000676530.1:ENST00000677746.1:ENST00000676931.1:ENST00000677447.1:ENST00000676548.1:ENST00000676487.1:ENST00000521440.6:ENST00000518442.5:ENST00000522887.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	15	325	2	3.34143	3.39666	3.45189	5.79986e-7	9.54433e-8	4.48558e-4	1.33534e-4
chr1	7706986	7707086	14878	0	+	0.53	(0.515,0.57]	chr1	1219	289	INTRON	INTRON	CAMTA1	ENSG00000171735.19	ENST00000303635.12	protein_coding	protein_coding	protein_coding	protein_coding	2	56	2	3.03037	3.396655	3.76294	0.00608732	2.08636e-4	0.0676501	0.0125926
chr7	158904287	158904387	3456616	0	+	0.52	(0.515,0.57]	chr7	323187	18	EXON_MRNA	EXON_MRNA:INTRON	DYNC2I1	ENSG00000126870.16	ENST00000407559.8:ENST00000444851.5:ENST00000467220.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	102	2	2.62224	3.396635	4.17103	5.82626e-4	2.07632e-5	0.0223753	0.00353137
chr5	179622692	179622770	2779774	0	-	0.320513	(0.32,0.35]	chr5	262334	3	SS5_PROX	SS5_PROX:INTRON	HNRNPH1	ENSG00000169045.17	ENST00000329433.11:ENST00000393432.9:ENST00000356731.9:ENST00000442819.6:ENST00000514332.5:ENST00000510411.5:ENST00000510678.5:ENST00000514731.5:ENST00000503105.5:ENST00000504779.6:ENST00000508103.5:ENST00000506721.5:ENST00000523137.5:ENST00000505811.5:ENST00000510431.5:ENST00000519056.5:ENST00000504348.5:ENST00000513225.5:ENST00000524180.5:ENST00000513972.5:ENST00000519707.5:ENST00000519455.5:ENST00000515158.5:ENST00000521116.5:ENST00000505087.1:ENST00000515714.5:ENST00000512273.5:ENST00000503664.1:ENST00000630639.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	87	2561	2	3.33051	3.3964999999999996	3.46249	1.28838e-7	2.02345e-9	1.72161e-4	1.24204e-5
chr17	30763616	30763716	6590126	0	+	0.33	(0.32,0.35]	chr17	640870	37	INTRON	INTRON	SUZ12P1	ENSG00000264538.7	ENST00000578070.5:ENST00000579526.5:ENST00000690405.1:ENST00000578195.6:ENST00000582557.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	2	74	2	3.03597	3.396455	3.75694	0.00832487	3.37248e-4	0.0774402	0.0163178
chr7	152298970	152299070	3679912	0	-	0.35	(0.32,0.35]	chr7	341623	122	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000684262.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	160	2	2.87602	3.3964499999999997	3.91688	7.58835e-4	7.04911e-6	0.025219	0.00188332
chr16	313248	313347	6426461	0	-	0.454545	(0.44,0.476]	chr16	617494	28	INTRON	INTRON	AXIN1	ENSG00000103126.15	ENST00000262320.8:ENST00000461023.5:ENST00000354866.7:ENST00000481769.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	109	2	3.0755	3.396385	3.71727	3.2089e-4	1.9693e-4	0.0159645	0.0128602
chr1	90989366	90989465	502201	0	-	0.454545	(0.44,0.476]	chr1	59504	66	INTRON	INTRON	ZNF644	ENSG00000122482.22	ENST00000370440.5:ENST00000337393.10:ENST00000347275.9:ENST00000361321.5:ENST00000467231.5:ENST00000498303.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	29	2	2.66433	3.3963799999999997	4.12843	0.0337192	0.0194358	0.134145	0.119831
chr15	38482705	38482801	5999695	0	+	0.458333	(0.44,0.476]	chr15	570283	13	UTR3	UTR3:EXON_MRNA:INTRON	FAM98B	ENSG00000171262.11	ENST00000397609.6:ENST00000491535.5:ENST00000559431.1	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	2.66433	3.3963799999999997	4.12843	0.0337192	0.0194358	0.134145	0.119831
chr15	40211799	40211898	6001776	0	+	0.444444	(0.44,0.476]	chr15	570676	12	INTRON	INTRON	BUB1B	ENSG00000156970.13	ENST00000412359.7:ENST00000287598.11	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	2.66433	3.3963799999999997	4.12843	0.0337192	0.0194358	0.134145	0.119831
chr8	65744906	65745006	3960037	0	-	0.46	(0.44,0.476]	chr8	363344	1	SS5_PROX	SS5_PROX:INTRON	PDE7A	ENSG00000205268.11	ENST00000401827.8:ENST00000379419.8:ENST00000396642.7:ENST00000518667.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	29	2	2.66433	3.3963799999999997	4.12843	0.0337192	0.0194358	0.134145	0.119831
chrX	74271062	74271162	7841389	0	-	0.52	(0.515,0.57]	chrX	799728	87	INTRON	INTRON	FTX	ENSG00000230590.12	ENST00000603672.5:ENST00000430772.6:ENST00000602776.6:ENST00000638681.1:ENST00000652319.1:ENST00000661133.1:ENST00000652071.1:ENST00000602812.6:ENST00000651703.1:ENST00000653018.1:ENST00000658448.1:ENST00000662240.1:ENST00000652527.1:ENST00000651451.1:ENST00000657611.1:ENST00000660481.1:ENST00000659574.1:ENST00000661084.1:ENST00000662494.1:ENST00000670936.1:ENST00000602420.6:ENST00000658203.1:ENST00000638985.1:ENST00000691187.1:ENST00000603037.2:ENST00000687056.1:ENST00000654870.2:ENST00000652540.1:ENST00000652331.2:ENST00000652013.1:ENST00000657070.1:ENST00000665069.1:ENST00000651936.1:ENST00000652496.1:ENST00000653874.2:ENST00000661335.1:ENST00000664123.1:ENST00000658439.1:ENST00000666535.1:ENST00000652970.1:ENST00000423992.3:ENST00000665313.2:ENST00000651140.1:ENST00000660100.1:ENST00000693483.1:ENST00000656041.1:ENST00000657327.1:ENST00000664343.1:ENST00000656977.1:ENST00000671343.1:ENST00000659407.1:ENST00000671067.1:ENST00000660829.1:ENST00000671385.1	lncRNA	lncRNA	lncRNA	lncRNA	6	140	2	3.33132	3.3963099999999997	3.4613	3.06542e-5	8.82208e-6	0.00459725	0.00213621
chr5	175525591	175525691	2551006	0	+	0.43	(0.408,0.44]	chr5	243555	4	SS3_PROX	SS3_PROX:INTRON	SFXN1	ENSG00000164466.13	ENST00000321442.10:ENST00000421887.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	58	2	1.4947	3.396245	5.29779	0.0566065	3.80479e-4	0.167352	0.0176313
chr17	57992471	57992570	6799901	0	-	0.292929	(0.28,0.32]	chr17	671422	28	EXON_LNCRNA	EXON_LNCRNA:INTRON	ENSG00000266086:ENSG00000264112	ENSG00000266086.3:ENSG00000264112.1	ENST00000578794.2:ENST00000665125.1:ENST00000577267.1:ENST00000585065.1	protein_coding	nonsense_mediated_decay	protein_coding:lncRNA	nonsense_mediated_decay:lncRNA:processed_transcript	2	80	2	3.39204	3.3962250000000003	3.40041	0.00273088	0.00188405	0.0467642	0.0402736
chr21	34115211	34115310	7401512	0	+	0.363636	(0.35,0.378]	chr21	753975	91	INTRON	INTRON	MRPS6	ENSG00000243927.6	ENST00000488492.5:ENST00000477091.5:ENST00000399312.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	62	2	1.38772	3.396085	5.40445	0.0555481	0.00114224	0.18407	0.0307966
chr11	61966888	61966988	4958198	0	-	0.53	(0.515,0.57]	chr11	466169	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	FTH1	ENSG00000167996.16	ENST00000529191.5:ENST00000529631.5:ENST00000530019.5:ENST00000273550.12:ENST00000534180.1:ENST00000532829.5:ENST00000620041.4:ENST00000526640.5:ENST00000532601.1:ENST00000534719.1:ENST00000533138.1:ENST00000529548.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	51	912	2	2.80808	3.396	3.98392	9.18221e-8	4.64681e-10	1.31459e-4	2.97502e-6
chr19	8402594	8402676	7010473	0	+	0.47561	(0.44,0.476]	chr19	696088	1	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	RAB11B	ENSG00000185236.12	ENST00000328024.11:ENST00000601897.1:ENST00000594216.1	protein_coding	protein_coding	protein_coding	protein_coding	7	187	2	3.08251	3.3958950000000003	3.70928	6.69786e-5	2.26649e-6	0.00721005	9.45612e-4
chr19	10961929	10962029	7015565	0	+	0.38	(0.378,0.408]	chr19	697161	2	SS5_PROX	SS5_PROX:INTRON	SMARCA4	ENSG00000127616.20	ENST00000644737.1:ENST00000642726.1:ENST00000646484.1:ENST00000643549.1:ENST00000643296.1:ENST00000647230.1:ENST00000642628.1:ENST00000646510.1:ENST00000429416.8:ENST00000644760.1:ENST00000344626.10:ENST00000646693.2:ENST00000645460.1:ENST00000541122.6:ENST00000589677.5:ENST00000444061.8:ENST00000590574.6	protein_coding	protein_coding	protein_coding	protein_coding	4	119	2	3.39176	3.395875	3.39999	1.88104e-4	1.17224e-4	0.012549	0.00929802
chr6	36981102	36981199	3089765	0	-	0.536082	(0.515,0.57]	chr6	289060	23	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	MTCH1	ENSG00000137409.21	ENST00000695055.1:ENST00000695048.1:ENST00000695049.1:ENST00000695050.1:ENST00000695051.1:ENST00000695052.1:ENST00000695053.1:ENST00000695054.1:ENST00000695046.1:ENST00000695047.1:ENST00000695045.1:ENST00000695044.1:ENST00000373616.9:ENST00000373627.10:ENST00000695059.1:ENST00000695060.1:ENST00000695058.1:ENST00000695066.1:ENST00000695067.1:ENST00000695068.1:ENST00000695069.1:ENST00000695063.1:ENST00000695064.1:ENST00000695065.1:ENST00000695062.1:ENST00000695072.1:ENST00000695070.1:ENST00000695071.1:ENST00000695073.1:ENST00000695074.1:ENST00000695075.1:ENST00000695076.1:ENST00000460219.3:ENST00000695077.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	42	2	1.88259	3.395855	4.90912	0.0251849	0.0021669	0.133519	0.0417866
chr1	149806547	149806646	549354	0	-	0.424242	(0.408,0.44]	chr1	64486	6	INTRON	INTRON	H2BC18	ENSG00000203814.7	ENST00000545683.1:ENST00000420462.1:ENST00000469483.1:ENST00000620458.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	261	2	2.9601	3.3958250000000003	3.83155	3.50935e-5	1.98887e-7	0.00499276	2.09496e-4
chr20	32432618	32432705	7256575	0	+	0.321839	(0.32,0.35]	chr20	737096	4	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	ASXL1	ENSG00000171456.21	ENST00000651418.1:ENST00000375687.10:ENST00000613218.4:ENST00000620121.4:ENST00000646985.1:ENST00000306058.9:ENST00000647223.1:ENST00000555564.2:ENST00000553345.5:ENST00000644168.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	43	2	2.25173	3.395805	4.53988	0.0202178	0.0180122	0.114436	0.109913
chr7	119661866	119661966	3627955	0	-	0.34	(0.32,0.35]	chr7	337315	1614	INTRON	INTRON	LINC02476	ENSG00000225546.6	ENST00000660268.1	lncRNA	lncRNA	lncRNA	lncRNA	2	43	2	2.25173	3.395805	4.53988	0.0202178	0.0180122	0.114436	0.109913
chr7	91977644	91977743	3351384	0	+	0.262626	[0,0.28]	chr7	312192	33	INTRON	INTRON	AKAP9	ENSG00000127914.19	ENST00000680534.1:ENST00000680513.1:ENST00000680072.1:ENST00000679821.1:ENST00000679554.1:ENST00000356239.8:ENST00000679521.1:ENST00000680181.1:ENST00000681722.1:ENST00000680766.1:ENST00000679448.1:ENST00000681412.1:ENST00000680047.1:ENST00000679474.1:ENST00000680952.1:ENST00000679457.1:ENST00000679722.1:ENST00000680074.1:ENST00000493453.1:ENST00000394564.5:ENST00000674381.2:ENST00000359028.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	50	2	2.24546	3.3957800000000002	4.5461	0.0365918	0.0206502	0.138959	0.122348
chr19	34257302	34257401	7051413	0	+	0.555556	(0.515,0.57]	chr19	703250	23	INTRON	INTRON	GARRE1	ENSG00000166398.14	ENST00000588470.5:ENST00000299505.8:ENST00000589583.5:ENST00000588338.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	42	2	1.7492	3.395725	5.04225	0.0382504	0.00131841	0.15832	0.0331539
chr9	37141733	37141832	4117870	0	+	0.353535	(0.35,0.378]	chr9	375372	144	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000322831.6:ENST00000461038.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	179	2	3.25267	3.395695	3.53872	1.01332e-4	9.01066e-6	0.00906611	0.00216015
chr1	246906157	246906256	681700	0	-	0.393939	(0.378,0.408]	chr1	80017	1	INTRON	INTRON	AHCTF1	ENSG00000153207.16	ENST00000648844.2:ENST00000326225.3:ENST00000366508.5	protein_coding	protein_coding	protein_coding	protein_coding	2	69	2	2.78946	3.39558	4.0017	0.0158859	7.73853e-5	0.101453	0.00735438
chr1	16323118	16323218	382326	0	-	0.51	(0.476,0.515]	chr1	44888	73	INTRON	INTRON	FBXO42	ENSG00000037637.11	ENST00000375592.8	protein_coding	protein_coding	protein_coding	protein_coding	4	53	2	1.63962	3.395525	5.15143	0.0346854	0.00166579	0.148144	0.0369207
chr4	67545037	67545137	2153512	0	-	0.41	(0.408,0.44]	chr4	212016	3	SS5_PROX	SS5_PROX:INTRON	CENPC	ENSG00000145241.11	ENST00000273853.11:ENST00000506882.5:ENST00000510189.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	115	2	3.39041	3.3955200000000003	3.40063	1.80518e-4	1.06576e-4	0.0121877	0.00874587
chr1	160303938	160304037	571904	0	-	0.333333	(0.32,0.35]	chr1	69300	43	INTRON	INTRON	COPA	ENSG00000122218.17	ENST00000241704.8:ENST00000696204.1:ENST00000696203.1:ENST00000696202.1:ENST00000649963.1:ENST00000696208.1:ENST00000696207.1:ENST00000696206.1:ENST00000649676.1:ENST00000368069.7:ENST00000647693.1:ENST00000649787.1:ENST00000650154.1:ENST00000647799.1:ENST00000648805.1:ENST00000647683.1:ENST00000649231.1:ENST00000648501.1:ENST00000696209.1:ENST00000696210.1:ENST00000696211.1:ENST00000647899.1:ENST00000648632.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	33	2	2.84569	3.3954899999999997	3.94529	0.0693433	0.0121137	0.184298	0.0962599
chr10	48358119	48358219	4431504	0	+	0.35	(0.32,0.35]	chr10	408569	318	INTRON	INTRON	MAPK8	ENSG00000107643.17	ENST00000395611.7:ENST00000432379.5:ENST00000374189.6:ENST00000429041.6:ENST00000374179.8:ENST00000426557.5:ENST00000476134.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	33	2	2.84569	3.3954899999999997	3.94529	0.0693433	0.0121137	0.184298	0.0962599
chr4	55631451	55631549	2150651	0	-	0.346939	(0.32,0.35]	chr4	211642	6	INTRON	INTRON	NMU	ENSG00000109255.11	ENST00000511469.5:ENST00000264218.7:ENST00000505262.5:ENST00000507338.1:ENST00000515325.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	33	2	2.84569	3.3954899999999997	3.94529	0.0693433	0.0121137	0.184298	0.0962599
chr17	50378000	50378094	6626038	0	+	0.531915	(0.515,0.57]	chr17	646882	15	INTRON	INTRON	EME1	ENSG00000154920.15	ENST00000393271.6:ENST00000338165.9:ENST00000510007.5:ENST00000511519.6:ENST00000511648.6:ENST00000510246.1:ENST00000513077.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	45	2	1.8661	3.3954150000000003	4.92473	0.0274846	0.00108255	0.123904	0.0300133
chr22	21861323	21861423	7561323	0	-	0.44	(0.408,0.44]	chr22	773388	531	INTRON	INTRON	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	16	405	2	3.11655	3.395345	3.67414	7.3034e-7	3.28448e-7	4.77393e-4	3.12285e-4
chr2	60780275	60780357	785378	0	+	0.439024	(0.408,0.44]	chr2	88312	1	SS3_PROX	SS3_PROX:INTRON	PAPOLG	ENSG00000115421.13	ENST00000496283.5:ENST00000414060.5:ENST00000238714.8:ENST00000453839.5:ENST00000483370.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	39	2	2.27464	3.39534	4.51604	0.0158016	0.0137419	0.109464	0.0949306
chr5	131359208	131359303	2485591	0	+	0.410526	(0.408,0.44]	chr5	237129	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	CDC42SE2	ENSG00000158985.14	ENST00000502840.5:ENST00000511432.5:ENST00000506419.5:ENST00000395246.5:ENST00000505065.2:ENST00000504701.5:ENST00000503291.5:ENST00000360515.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	39	2	2.27464	3.39534	4.51604	0.0158016	0.0137419	0.109464	0.0949306
chr1	220045245	220045344	639181	0	-	0.515152	(0.476,0.515]	chr1	75333	46	INTRON	INTRON	EPRS1	ENSG00000136628.18	ENST00000366923.8:ENST00000609181.5:ENST00000477030.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	39	2	2.26034	3.3952850000000003	4.53023	0.0166235	0.0119748	0.110511	0.0899583
chr12	93788489	93788589	5191013	0	+	0.37	(0.35,0.378]	chr12	490921	500	INTRON	INTRON	CRADD	ENSG00000169372.13	ENST00000332896.8:ENST00000549615.5:ENST00000551065.5:ENST00000548483.5:ENST00000542893.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	30	2	2.39746	3.395245	4.39303	0.041314	0.0237246	0.161534	0.118716
chr15	81660570	81660668	6241906	0	-	0.367347	(0.35,0.378]	chr15	595850	3	EXON_LNCRNA	EXON_LNCRNA:INTRON	ENSG00000259692	ENSG00000259692.6	ENST00000559428.2:ENST00000560054.6:ENST00000560097.1:ENST00000668584.1	lncRNA	lncRNA	lncRNA	lncRNA	1	30	2	2.39746	3.395245	4.39303	0.041314	0.0237246	0.161534	0.118716
chr18	36137635	36137735	6891495	0	+	0.36	(0.35,0.378]	chr18	682968	4	SS5_PROX	SS5_PROX:INTRON	ELP2	ENSG00000134759.14	ENST00000543127.5:ENST00000544267.5:ENST00000351393.10:ENST00000545632.5:ENST00000442325.6:ENST00000358232.11:ENST00000423854.6:ENST00000539560.5:ENST00000535488.5:ENST00000540135.5:ENST00000542430.5:ENST00000350494.10:ENST00000542824.5:ENST00000540799.1:ENST00000543439.5:ENST00000540730.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	30	2	2.39746	3.395245	4.39303	0.041314	0.0237246	0.161534	0.118716
chr18	36785303	36785401	6963928	0	-	0.377551	(0.35,0.378]	chr18	689195	18	INTRON	INTRON	TPGS2	ENSG00000134779.15	ENST00000590258.2:ENST00000590652.5:ENST00000614939.4:ENST00000587129.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	30	2	2.39746	3.395245	4.39303	0.041314	0.0237246	0.161534	0.118716
chr18	80040109	80040209	6937978	0	+	0.36	(0.35,0.378]	chr18	686163	11	INTRON	INTRON	RBFA	ENSG00000101546.13	ENST00000306735.10:ENST00000262197.7	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	2.39746	3.395245	4.39303	0.041314	0.0237246	0.161534	0.118716
chr2	58233699	58233798	1126686	0	-	0.373737	(0.35,0.378]	chr2	120969	12	INTRON	INTRON	FANCL	ENSG00000115392.13	ENST00000696400.1:ENST00000403295.8:ENST00000696492.1:ENST00000427708.7:ENST00000696314.1:ENST00000696315.1:ENST00000696454.1:ENST00000696508.1:ENST00000696548.1:ENST00000696542.1:ENST00000696319.1:ENST00000403676.6:ENST00000696433.1:ENST00000696434.1:ENST00000696499.1:ENST00000696564.1:ENST00000402135.8:ENST00000696546.1:ENST00000233741.9:ENST00000696316.1:ENST00000696378.1:ENST00000696435.1:ENST00000696493.1:ENST00000696543.1:ENST00000696544.1:ENST00000696545.1:ENST00000696565.1:ENST00000696620.1:ENST00000696621.1:ENST00000696635.1:ENST00000696364.1:ENST00000696634.1:ENST00000696317.1:ENST00000696622.1:ENST00000696467.1:ENST00000696547.1:ENST00000449070.6:ENST00000696305.1:ENST00000417361.2:ENST00000696338.1:ENST00000696361.1:ENST00000696318.1:ENST00000696371.1:ENST00000696409.1:ENST00000696410.1:ENST00000696455.1:ENST00000696468.1:ENST00000696527.1:ENST00000696567.1:ENST00000696324.1:ENST00000696566.1:ENST00000696623.1:ENST00000446381.6:ENST00000696469.1:ENST00000696624.1:ENST00000696411.1:ENST00000470506.2:ENST00000696358.1:ENST00000696373.1:ENST00000696394.1:ENST00000696320.1:ENST00000696395.1:ENST00000696341.1:ENST00000696340.1:ENST00000696374.1:ENST00000696342.1:ENST00000696325.1:ENST00000696399.1:ENST00000696398.1:ENST00000696306.1:ENST00000696344.1:ENST00000696362.1:ENST00000696528.1:ENST00000696326.1:ENST00000696625.1:ENST00000696510.1:ENST00000696438.1:ENST00000696496.1:ENST00000696509.1:ENST00000696569.1:ENST00000696457.1:ENST00000696458.1:ENST00000696473.1:ENST00000696495.1:ENST00000696415.1:ENST00000696472.1:ENST00000696459.1:ENST00000696416.1:ENST00000696530.1:ENST00000696460.1:ENST00000696570.1:ENST00000696531.1:ENST00000696307.1:ENST00000696345.1:ENST00000696377.1:ENST00000696417.1:ENST00000696594.1:ENST00000696595.1:ENST00000696379.1:ENST00000696346.1:ENST00000696347.1:ENST00000696461.1:ENST00000696596.1:ENST00000696549.1:ENST00000696597.1:ENST00000696550.1:ENST00000696598.1:ENST00000696321.1:ENST00000696476.1:ENST00000696477.1:ENST00000696511.1:ENST00000481670.3:ENST00000696403.1:ENST00000696551.1:ENST00000696308.1:ENST00000696418.1:ENST00000696404.1:ENST00000696478.1:ENST00000696419.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	30	2	2.39746	3.395245	4.39303	0.041314	0.0237246	0.161534	0.118716
chr2	74022526	74022625	812164	0	+	0.373737	(0.35,0.378]	chr2	90852	190	INTRON	INTRON	TET3	ENSG00000187605.16	ENST00000409262.8:ENST00000305799.8	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	2.39746	3.395245	4.39303	0.041314	0.0237246	0.161534	0.118716
chr8	103403524	103403624	4013596	0	-	0.36	(0.35,0.378]	chr8	367385	2	SS3_PROX	SS3_PROX:INTRON	SLC25A32	ENSG00000164933.12	ENST00000521645.5:ENST00000523256.6:ENST00000297578.9:ENST00000523866.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	30	2	2.39746	3.395245	4.39303	0.041314	0.0237246	0.161534	0.118716
chr16	18907091	18907191	6457916	0	-	0.51	(0.476,0.515]	chr16	622891	67	INTRON	INTRON	SMG1	ENSG00000157106.18	ENST00000446231.7:ENST00000532700.6:ENST00000569122.1:ENST00000563836.1	protein_coding	protein_coding	protein_coding	protein_coding	2	41	2	1.79693	3.395175	4.99342	0.0649782	0.00139274	0.179417	0.0341261
chr12	111592453	111592553	5413164	0	-	0.45	(0.44,0.476]	chr12	516941	277	INTRON	INTRON	ATXN2	ENSG00000204842.18	ENST00000642389.2:ENST00000608853.5:ENST00000672613.1:ENST00000673436.1:ENST00000643669.2:ENST00000616825.4:ENST00000389153.10:ENST00000550104.5:ENST00000483311.6:ENST00000672335.1:ENST00000673557.1:ENST00000673283.1:ENST00000673449.1:ENST00000535949.5:ENST00000542287.6:ENST00000644883.1:ENST00000647305.1:ENST00000671792.1:ENST00000392645.6:ENST00000672105.1:ENST00000549455.1:ENST00000548492.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	86	2	2.63508	3.3950199999999997	4.15496	0.00501007	3.09831e-5	0.0618077	0.00443703
chr12	71611292	71611390	5363024	0	-	0.285714	(0.28,0.32]	chr12	511883	3	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ZFC3H1	ENSG00000133858.17	ENST00000378743.9:ENST00000552994.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	147	2	2.80232	3.3949949999999998	3.98767	3.09366e-4	2.63067e-4	0.0157609	0.0149561
chr19	47064580	47064678	7195604	0	-	0.408163	(0.378,0.408]	chr19	729063	5	UTR3	UTR3:EXON_MRNA	ZC3H4	ENSG00000130749.10	ENST00000253048.10:ENST00000601973.1	protein_coding	protein_coding	protein_coding	protein_coding	2	69	2	3.1136	3.394845	3.67609	0.00443339	6.32264e-4	0.061054	0.0231174
chr4	87342303	87342403	2198785	0	-	0.47	(0.44,0.476]	chr4	215746	13	INTRON	INTRON	HSD17B11	ENSG00000198189.11	ENST00000358290.9:ENST00000507518.5:ENST00000512344.5:ENST00000502576.5:ENST00000507286.1:ENST00000513854.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	86	2	3.0335	3.39479	3.75608	9.65686e-4	2.6487e-4	0.0282401	0.0144071
chr18	681478	681575	6939449	0	-	0.515464	(0.515,0.57]	chr18	686388	24	INTRON	INTRON	ENOSF1	ENSG00000132199.20	ENST00000647584.2:ENST00000383578.7:ENST00000584259.6:ENST00000340116.12:ENST00000581475.5:ENST00000582745.5:ENST00000580982.5:ENST00000585128.6:ENST00000583973.5:ENST00000581928.5:ENST00000584453.5:ENST00000584706.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	96	2	3.20879	3.39457	3.58035	5.21239e-4	6.40762e-5	0.0204523	0.00711194
chr6	49612296	49612396	3105208	0	-	0.36	(0.35,0.378]	chr6	290644	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	RHAG	ENSG00000112077.18	ENST00000371175.10:ENST00000646272.1:ENST00000646939.1:ENST00000646963.1	protein_coding	protein_coding	protein_coding	protein_coding	9	177	2	2.3943	3.39457	4.39484	2.69062e-4	2.18772e-5	0.0145385	0.00381314
chr10	3778455	3778553	4543129	0	-	0.408163	(0.378,0.408]	chr10	419496	26	UTR3	UTR3:EXON_MRNA:INTRON	KLF6	ENSG00000067082.15	ENST00000497571.6:ENST00000461124.1:ENST00000542957.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	60	2	1.36527	3.394425	5.42358	0.0587392	8.39231e-4	0.189982	0.0266487
chr1	39000771	39000871	74494	0	+	0.51	(0.476,0.515]	chr1	9635	4	SS3_PROX	SS3_PROX:INTRON	AKIRIN1	ENSG00000174574.16	ENST00000432648.8:ENST00000372984.8:ENST00000446189.6:ENST00000531822.1	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	2.65268	3.39427	4.13586	0.031846	0.0201975	0.13151	0.121243
chr13	29585924	29586024	5568287	0	-	0.49	(0.476,0.515]	chr13	532223	317	INTRON	INTRON	SLC7A1	ENSG00000139514.13	ENST00000380752.10:ENST00000450494.1	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	2.65268	3.39427	4.13586	0.031846	0.0201975	0.13151	0.121243
chr16	16015028	16015128	6308415	0	+	0.51	(0.476,0.515]	chr16	603527	4	SS5_PROX	SS5_PROX:INTRON	ABCC1	ENSG00000103222.20	ENST00000574224.2:ENST00000678422.1:ENST00000677164.1:ENST00000399408.7:ENST00000572882.3:ENST00000399410.8:ENST00000679043.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	29	2	2.65268	3.39427	4.13586	0.031846	0.0201975	0.13151	0.121243
chr17	66581471	66581571	6665088	0	+	0.51	(0.476,0.515]	chr17	650338	265	INTRON	INTRON	PRKCA	ENSG00000154229.12	ENST00000413366.8:ENST00000578063.5:ENST00000284384.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	29	2	2.65268	3.39427	4.13586	0.031846	0.0201975	0.13151	0.121243
chr17	81036862	81036961	6689263	0	+	0.494949	(0.476,0.515]	chr17	653674	1	CDS	CDS:UTR5:EXON_MRNA:INTRON	BAIAP2	ENSG00000175866.16	ENST00000321280.11:ENST00000576470.5:ENST00000575750.5:ENST00000428708.7:ENST00000572329.5:ENST00000575989.5:ENST00000570913.5:ENST00000575712.5:ENST00000575245.5:ENST00000321300.10:ENST00000435091.7:ENST00000573894.5:ENST00000571530.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	29	2	2.65268	3.39427	4.13586	0.031846	0.0201975	0.13151	0.121243
chr4	158709474	158709561	2280566	0	-	0.494253	(0.476,0.515]	chr4	221490	5	UTR3	UTR3:EXON_MRNA	PPID	ENSG00000171497.5	ENST00000307720.4	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	2.65268	3.39427	4.13586	0.031846	0.0201975	0.13151	0.121243
chr6	17682728	17682827	3065971	0	-	0.50505	(0.476,0.515]	chr6	284866	66	INTRON	INTRON	NUP153	ENSG00000124789.12	ENST00000613258.4:ENST00000537253.5:ENST00000262077.3	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	2.65268	3.39427	4.13586	0.031846	0.0201975	0.13151	0.121243
chr9	4722825	4722925	4228745	0	-	0.5	(0.476,0.515]	chr9	388785	2	SS3_PROX	SS3_PROX:INTRON	AK3	ENSG00000147853.17	ENST00000381809.8:ENST00000611749.4:ENST00000359883.6:ENST00000447596.4	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	2.65268	3.39427	4.13586	0.031846	0.0201975	0.13151	0.121243
chr1	91506565	91506663	161165	0	+	0.326531	(0.32,0.35]	chr1	17379	44	INTRON	INTRON	CDC7	ENSG00000097046.13	ENST00000234626.11:ENST00000428239.5:ENST00000426137.1:ENST00000497611.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	34	2	2.23182	3.394215	4.55661	0.068598	0.00927858	0.184298	0.0855292
chr16	70240506	70240606	6509964	0	-	0.34	(0.32,0.35]	chr16	630472	1	SS5_PROX	SS5_PROX:INTRON	SMG1P7	ENSG00000261556.10	ENST00000565246.7:ENST00000568855.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	1	34	2	2.23182	3.394215	4.55661	0.068598	0.00927858	0.184298	0.0855292
chr3	158269455	158269555	1539877	0	+	0.34	(0.32,0.35]	chr3	160296	378	INTRON	INTRON	RSRC1	ENSG00000174891.14	ENST00000480820.5:ENST00000295930.7:ENST00000471994.5:ENST00000683733.1:ENST00000682221.1:ENST00000683831.1:ENST00000683516.1:ENST00000482822.3:ENST00000476899.6:ENST00000464171.5:ENST00000611884.5:ENST00000682164.1:ENST00000684604.1:ENST00000683899.1:ENST00000682500.1:ENST00000684683.1:ENST00000312179.10:ENST00000475278.6:ENST00000480119.5:ENST00000471911.5:ENST00000683137.1:ENST00000477788.5:ENST00000496268.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	34	2	2.23182	3.394215	4.55661	0.068598	0.00927858	0.184298	0.0855292
chr4	2959037	2959136	2100184	0	-	0.343434	(0.32,0.35]	chr4	207910	9	INTRON	INTRON	NOP14	ENSG00000087269.16	ENST00000416614.7:ENST00000314262.10:ENST00000502735.5:ENST00000398071.4	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	2.23182	3.394215	4.55661	0.068598	0.00927858	0.184298	0.0855292
chr16	1624373	1624473	6274640	0	+	0.41	(0.408,0.44]	chr16	599386	90	INTRON	INTRON	CRAMP1	ENSG00000007545.16	ENST00000397412.8:ENST00000293925.9	protein_coding	protein_coding	protein_coding	protein_coding	3	47	2	2.03431	3.394145	4.75398	0.0154896	0.00703931	0.108998	0.0718189
chr17	15507783	15507882	6731905	0	-	0.414141	(0.408,0.44]	chr17	660295	4	INTRON	INTRON	TVP23C-CDRT4:TVP23C	ENSG00000259024.6:ENSG00000175106.17	ENST00000522212.6:ENST00000557349.5:ENST00000481756.7:ENST00000518506.4:ENST00000225576.7:ENST00000581273.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	47	2	2.03431	3.394145	4.75398	0.0154896	0.00703931	0.108998	0.0718189
chr3	196390213	196390313	1899233	0	-	0.43	(0.408,0.44]	chr3	190184	178	INTRON	INTRON	UBXN7	ENSG00000163960.12	ENST00000296328.9:ENST00000429160.1:ENST00000428095.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	47	2	2.03431	3.394145	4.75398	0.0154896	0.00703931	0.108998	0.0718189
chr16	24730800	24730899	6329224	0	+	0.40404	(0.378,0.408]	chr16	605933	1	INTRON	INTRON	TNRC6A	ENSG00000090905.19	ENST00000566108.2:ENST00000395799.8:ENST00000315183.11:ENST00000562829.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	66	2	3.10274	3.393955	3.68517	0.00586642	3.90172e-4	0.0668095	0.0177751
chr10	887650	887749	4542145	0	-	0.434343	(0.408,0.44]	chr10	419294	15	INTRON	INTRON	LARP4B	ENSG00000107929.16	ENST00000316157.8:ENST00000690516.1:ENST00000476529.5:ENST00000406525.6:ENST00000481118.1:ENST00000412411.1:ENST00000693234.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	35	2	2.95296	3.3939500000000002	3.83494	0.0411442	0.00929354	0.161534	0.0817766
chr9	111932897	111932997	4184826	0	+	0.44	(0.408,0.44]	chr9	381736	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	UGCG	ENSG00000148154.10	ENST00000374279.4	protein_coding	protein_coding	protein_coding	protein_coding	5	59	2	1.54273	3.3938699999999997	5.24501	0.0337312	0.00137378	0.146709	0.0336718
chr4	77811476	77811576	2166957	0	-	0.52	(0.515,0.57]	chr4	213719	347	INTRON	INTRON	CNOT6L	ENSG00000138767.14	ENST00000504123.7:ENST00000649644.1:ENST00000515506.6:ENST00000512485.6:ENST00000504804.7:ENST00000506166.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	37	2	1.79136	3.393855	4.99635	0.0638444	8.06602e-4	0.177811	0.0258804
chr1	234411031	234411130	660733	0	-	0.434343	(0.408,0.44]	chr1	78143	1	INTRON	INTRON	TARBP1	ENSG00000059588.10	ENST00000040877.2:ENST00000463793.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	29	2	2.66579	3.3938300000000003	4.12187	0.0354689	0.019342	0.137535	0.119831
chr11	12695142	12695242	4739785	0	+	0.42	(0.408,0.44]	chr11	439061	192	INTRON	INTRON	TEAD1	ENSG00000187079.20	ENST00000527636.7:ENST00000527376.3:ENST00000334310.10:ENST00000527575.6	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	2.66579	3.3938300000000003	4.12187	0.0354689	0.019342	0.137535	0.119831
chr12	45968941	45969040	5315406	0	-	0.414141	(0.408,0.44]	chr12	505634	44	INTRON	INTRON	SCAF11	ENSG00000139218.18	ENST00000369367.8:ENST00000547018.5:ENST00000266589.10:ENST00000395454.6:ENST00000395453.2:ENST00000474828.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:non_stop_decay	1	29	2	2.66579	3.3938300000000003	4.12187	0.0354689	0.019342	0.137535	0.119831
chr12	132742853	132742953	5449383	0	-	0.41	(0.408,0.44]	chr12	521929	3	SS5_PROX	SS5_PROX:INTRON	ANKLE2	ENSG00000176915.15	ENST00000357997.10:ENST00000539605.5:ENST00000538591.5:ENST00000535036.5:ENST00000545623.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	29	2	2.66579	3.3938300000000003	4.12187	0.0354689	0.019342	0.137535	0.119831
chr13	44436528	44436628	5583176	0	-	0.42	(0.408,0.44]	chr13	533637	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	TSC22D1	ENSG00000102804.15	ENST00000501704.3:ENST00000458659.3:ENST00000611198.4:ENST00000622051.1:ENST00000261489.6:ENST00000487881.2:ENST00000472477.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	29	2	2.66579	3.3938300000000003	4.12187	0.0354689	0.019342	0.137535	0.119831
chr2	15559134	15559231	1073146	0	-	0.412371	(0.408,0.44]	chr2	114487	1	INTRON	INTRON	NBAS	ENSG00000151779.13	ENST00000281513.10	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	2.66579	3.3938300000000003	4.12187	0.0354689	0.019342	0.137535	0.119831
chr3	122487065	122487165	1801340	0	-	0.41	(0.408,0.44]	chr3	181026	193	INTRON	INTRON	KPNA1	ENSG00000114030.13	ENST00000344337.11:ENST00000485027.5:ENST00000494339.5:ENST00000465882.5:ENST00000482287.5:ENST00000476916.5:ENST00000493510.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	29	2	2.66579	3.3938300000000003	4.12187	0.0354689	0.019342	0.137535	0.119831
chr6	106189375	106189475	3176790	0	-	0.44	(0.408,0.44]	chr6	296154	23	INTRON	INTRON	ATG5	ENSG00000057663.16	ENST00000636437.1:ENST00000636335.1:ENST00000369070.5:ENST00000369076.8:ENST00000635758.2:ENST00000360666.6:ENST00000343245.7:ENST00000475645.1:ENST00000646025.1:ENST00000613993.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	29	2	2.66579	3.3938300000000003	4.12187	0.0354689	0.019342	0.137535	0.119831
chr8	10798514	10798614	3908106	0	-	0.43	(0.408,0.44]	chr8	358079	103	INTRON	INTRON	PINX1	ENSG00000254093.9	ENST00000314787.8:ENST00000519088.5:ENST00000524114.5:ENST00000523559.1:ENST00000524061.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	29	2	2.66579	3.3938300000000003	4.12187	0.0354689	0.019342	0.137535	0.119831
chr1	165850596	165850695	243979	0	+	0.414141	(0.408,0.44]	chr1	29139	223	INTRON	INTRON	UCK2	ENSG00000143179.16	ENST00000367879.9:ENST00000642653.1	protein_coding	protein_coding	protein_coding	protein_coding	2	43	2	2.16746	3.393775	4.62009	0.024436	0.00504155	0.12011	0.0646039
chr19	28538576	28538676	7166481	0	-	0.35	(0.32,0.35]	chr19	724193	34	INTRON	INTRON	ENSG00000283403	ENSG00000283403.1	ENST00000592347.5	lncRNA	lncRNA	lncRNA	lncRNA	3	99	2	2.75463	3.39372	4.03281	0.00387748	8.51676e-5	0.0543578	0.00780562
chr1	100113560	100113659	515664	0	-	0.40404	(0.378,0.408]	chr1	60466	27	INTRON	INTRON	SASS6	ENSG00000156876.10	ENST00000462159.1:ENST00000287482.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	142	2	3.33464	3.3936149999999996	3.45259	2.59942e-4	1.36611e-5	0.0148796	0.00275994
chr11	74908913	74909008	4988803	0	-	0.536842	(0.515,0.57]	chr11	471338	13	INTRON	INTRON	XRRA1	ENSG00000166435.16	ENST00000530562.5:ENST00000340360.10:ENST00000321448.12:ENST00000684022.1:ENST00000531849.5:ENST00000527087.5:ENST00000528219.5:ENST00000525407.5:ENST00000526047.1:ENST00000531852.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	37	2	2.01737	3.393605	4.76984	0.0352218	0.00198034	0.137535	0.0411469
chr15	50601475	50601574	6172409	0	-	0.525253	(0.515,0.57]	chr15	588282	18	INTRON	INTRON	TRPM7	ENSG00000092439.16	ENST00000646667.1:ENST00000560955.5	protein_coding	protein_coding	protein_coding	protein_coding	2	37	2	2.01737	3.393605	4.76984	0.0352218	0.00198034	0.137535	0.0411469
chr15	87660978	87661078	6256164	0	-	0.38	(0.378,0.408]	chr15	596826	1176	INTRON	INTRON	ENSG00000259560	ENSG00000259560.2	ENST00000665121.1:ENST00000560439.1	lncRNA	lncRNA	lncRNA	lncRNA	4	109	2	2.85009	3.393605	3.93712	6.76594e-4	1.09377e-4	0.0238119	0.00884858
chr16	69374444	69374543	6508085	0	-	0.555556	(0.515,0.57]	chr16	630123	17	INTRON	INTRON	TERF2	ENSG00000132604.11	ENST00000254942.8:ENST00000566750.5:ENST00000569542.6:ENST00000566257.5:ENST00000569611.6:ENST00000567296.6:ENST00000569280.1:ENST00000567841.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	37	2	2.01737	3.393605	4.76984	0.0352218	0.00198034	0.137535	0.0411469
chr17	82577753	82577853	6693192	0	+	0.56	(0.515,0.57]	chr17	654652	55	INTRON	INTRON	FOXK2	ENSG00000141568.21	ENST00000473637.6:ENST00000335255.10:ENST00000531030.5:ENST00000526383.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	37	2	2.01737	3.393605	4.76984	0.0352218	0.00198034	0.137535	0.0411469
chr10	86520073	86520172	4659349	0	-	0.525253	(0.515,0.57]	chr10	429302	16	INTRON	INTRON	WAPL	ENSG00000062650.20	ENST00000298767.10	protein_coding	protein_coding	protein_coding	protein_coding	2	35	2	1.94945	3.393545	4.83764	0.0414068	0.00279527	0.161557	0.0469265
chr17	35609586	35609686	6599764	0	+	0.52	(0.515,0.57]	chr17	642258	8	INTRON	INTRON	AP2B1	ENSG00000006125.18	ENST00000616784.4:ENST00000621914.4:ENST00000620039.4:ENST00000616681.4:ENST00000621668.4:ENST00000610402.5:ENST00000612035.4:ENST00000614600.4:ENST00000612116.5:ENST00000618940.4:ENST00000591561.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	35	2	1.94945	3.393545	4.83764	0.0414068	0.00279527	0.161557	0.0469265
chr8	102393691	102393791	4012566	0	-	0.52	(0.515,0.57]	chr8	367237	317	INTRON	INTRON	UBR5	ENSG00000104517.13	ENST00000520539.6:ENST00000220959.8:ENST00000521922.5	protein_coding	protein_coding	protein_coding	protein_coding	2	35	2	1.94945	3.393545	4.83764	0.0414068	0.00279527	0.161557	0.0469265
chr11	31468152	31468251	4938821	0	-	0.272727	[0,0.28]	chr11	462579	45	INTRON	INTRON	IMMP1L	ENSG00000148950.11	ENST00000532287.6:ENST00000534812.5:ENST00000526776.5:ENST00000278200.5:ENST00000648582.1:ENST00000533642.1:ENST00000527184.5:ENST00000528161.5:ENST00000532624.5:ENST00000529749.5:ENST00000530023.5:ENST00000531693.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	48	2	1.84147	3.3935400000000002	4.94561	0.0610416	0.0150263	0.193277	0.0994339
chr17	50963772	50963872	6795389	0	-	0.24	[0,0.28]	chr17	670813	17	UTR3	UTR3:EXON_MRNA	SPAG9	ENSG00000008294.22	ENST00000262013.12	protein_coding	protein_coding	protein_coding	protein_coding	4	68	2	1.67675	3.3935400000000002	5.11033	0.0352695	0.00991388	0.150332	0.0838372
chr5	55424057	55424151	2356279	0	+	0.202128	[0,0.28]	chr5	227276	12	UTR3	UTR3:EXON_MRNA:INTRON	MTREX	ENSG00000039123.16	ENST00000230640.10:ENST00000506750.5:ENST00000508716.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	48	2	1.84147	3.3935400000000002	4.94561	0.0610416	0.0150263	0.193277	0.0994339
chr10	73010868	73010968	4646973	0	-	0.27	[0,0.28]	chr10	427478	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	P4HA1	ENSG00000122884.13	ENST00000394890.7:ENST00000307116.6:ENST00000373008.6:ENST00000440381.5:ENST00000263556.3:ENST00000464310.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	173	2	3.07102	3.393525	3.71603	0.0011243	1.04921e-4	0.0306963	0.00863456
chr1	45603543	45603640	93400	0	+	0.309278	(0.28,0.32]	chr1	12592	8	INTRON	INTRON	NASP	ENSG00000132780.17	ENST00000437901.6:ENST00000537798.5:ENST00000437362.6:ENST00000350030.8:ENST00000464190.6:ENST00000527359.5:ENST00000528084.5:ENST00000453748.5:ENST00000525515.5:ENST00000527470.5:ENST00000529333.5:ENST00000531532.5:ENST00000528238.5:ENST00000534101.1:ENST00000470768.5:ENST00000372052.8:ENST00000351223.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	52	2	2.18092	3.39351	4.6061	0.0271832	0.0102724	0.123904	0.089002
chr20	35707754	35707846	7336189	0	-	0.304348	(0.28,0.32]	chr20	747405	7	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	RBM39	ENSG00000131051.24	ENST00000253363.11:ENST00000639702.1:ENST00000656873.1:ENST00000463004.5:ENST00000361162.10:ENST00000461283.5:ENST00000403542.6:ENST00000338163.10:ENST00000528062.7:ENST00000429968.5:ENST00000444878.5:ENST00000665058.1:ENST00000476806.5:ENST00000495293.5:ENST00000492779.5:ENST00000482563.1:ENST00000465158.5:ENST00000448303.5:ENST00000470563.5:ENST00000615771.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	54	2	1.85772	3.393505	4.92929	0.0300199	0.0098607	0.142135	0.0838128
chr10	117349091	117349190	4702444	0	-	0.444444	(0.44,0.476]	chr10	433752	76	INTRON	INTRON	PDZD8	ENSG00000165650.12	ENST00000334464.7:ENST00000489491.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	41	2	2.54944	3.3934949999999997	4.23755	0.0263357	0.00591346	0.122221	0.0694038
chr1	58668682	58668782	467506	0	-	0.41	(0.408,0.44]	chr1	56428	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MYSM1	ENSG00000162601.11	ENST00000655340.1:ENST00000493821.6:ENST00000472487.6:ENST00000665648.1:ENST00000659812.1:ENST00000659108.1:ENST00000401044.7:ENST00000660611.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	62	2	1.8937	3.393485	4.89327	0.00928733	0.00458906	0.0855292	0.0595107
chr13	113187133	113187231	5651834	0	-	0.397959	(0.378,0.408]	chr13	538587	17	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	PCID2	ENSG00000126226.22	ENST00000337344.9:ENST00000622406.4:ENST00000375479.6:ENST00000375477.5:ENST00000246505.9:ENST00000375459.5:ENST00000493650.5:ENST00000375457.2:ENST00000473462.5:ENST00000475433.5:ENST00000480971.5:ENST00000484641.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	54	2	1.45712	3.3933999999999997	5.32968	0.0597975	0.00119786	0.189982	0.0315806
chr3	149060224	149060307	1840728	0	-	0.168675	[0,0.28]	chr3	185143	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HLTF	ENSG00000071794.16	ENST00000310053.10:ENST00000465259.5:ENST00000392912.6:ENST00000494055.5:ENST00000493881.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	91	2	2.97616	3.3933600000000004	3.81056	0.0128425	4.09492e-4	0.0926667	0.0181306
chr3	9997924	9998023	1362081	0	+	0.424242	(0.408,0.44]	chr3	143402	37	INTRON	INTRON	EMC3-AS1	ENSG00000180385.9	ENST00000692142.1:ENST00000366264.6:ENST00000693066.1:ENST00000326237.3:ENST00000440568.1:ENST00000424904.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	4	59	2	1.66104	3.39336	5.12568	0.0349715	7.90919e-4	0.13747500000000001	0.0258324
chr22	21851627	21851727	7561226	0	-	0.27	[0,0.28]	chr22	773388	434	INTRON	INTRON	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	6	186	2	2.49162	3.3933150000000003	4.29501	9.9577e-4	1.05837e-4	0.0290732	0.00920724
chr11	3741612	3741712	4894602	0	-	0.36	(0.35,0.378]	chr11	458864	59	INTRON	INTRON	NUP98	ENSG00000110713.17	ENST00000359171.8:ENST00000324932.12:ENST00000650171.1:ENST00000355260.7:ENST00000397004.8:ENST00000397007.8:ENST00000527104.5:ENST00000529379.1:ENST00000397013.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	111	2	2.71933	3.39325	4.06717	9.31518e-4	1.16746e-4	0.0278746	0.00976708
chr17	28320197	28320296	6584081	0	+	0.454545	(0.44,0.476]	chr17	639908	1	INTRON	INTRON	TMEM97	ENSG00000109084.14	ENST00000226230.8:ENST00000583381.5:ENST00000582113.1:ENST00000582384.1:ENST00000336687.6	protein_coding	protein_coding	protein_coding	protein_coding	2	42	2	2.08277	3.39316	4.70355	0.0309998	0.00383786	0.13151	0.0562562
chr2	86131206	86131306	822641	0	+	0.38	(0.378,0.408]	chr2	91819	1	SS5_PROX	SS5_PROX:INTRON	PTCD3	ENSG00000132300.19	ENST00000254630.12:ENST00000464541.5:ENST00000476215.5:ENST00000487043.5:ENST00000469585.5:ENST00000493430.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	269	2	3.33018	3.39316	3.45614	8.91405e-6	1.32262e-6	0.00229975	6.75847e-4
chr10	110054618	110054718	4518860	0	+	0.54	(0.515,0.57]	chr10	416765	376	INTRON	INTRON	ADD3	ENSG00000148700.15	ENST00000468251.5:ENST00000360162.7:ENST00000277900.12:ENST00000356080.9:ENST00000484622.5:ENST00000487085.5:ENST00000459738.5:ENST00000497125.5:ENST00000495661.5:ENST00000475954.5:ENST00000496517.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	55	2	3.30665	3.3931199999999997	3.47959	0.00213226	8.38022e-4	0.041756	0.0263691
chr7	121257332	121257432	3396344	0	+	0.28	[0,0.28]	chr7	317793	126	INTRON	INTRON	CPED1	ENSG00000106034.18	ENST00000310396.10:ENST00000450913.6:ENST00000423795.5:ENST00000466055.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	59	2	1.84046	3.3930350000000002	4.94561	0.0335889	0.0150263	0.146709	0.0994339
chr10	97227878	97227974	4674502	0	-	0.354167	(0.35,0.378]	chr10	430749	14	INTRON	INTRON	ARHGAP19	ENSG00000213390.11	ENST00000492211.5:ENST00000358308.7:ENST00000358531.9:ENST00000487035.1:ENST00000371027.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	49	2	1.92704	3.39287	4.8587	0.0228255	0.00695662	0.125469	0.0718189
chr7	149200739	149200838	3445380	0	+	0.515152	(0.476,0.515]	chr7	321367	16	INTRON	INTRON	ZNF282	ENSG00000170265.12	ENST00000610704.5:ENST00000479907.1	protein_coding	protein_coding	protein_coding	protein_coding	3	84	2	3.11021	3.392825	3.67544	5.51624e-4	5.02606e-4	0.0216014	0.020217099999999998
chr21	38103432	38103532	7463920	0	-	0.45	(0.44,0.476]	chr21	760303	37	INTRON	INTRON	DSCR4	ENSG00000184029.9	ENST00000398948.5:ENST00000328264.7:ENST00000482032.1	lncRNA	lncRNA	lncRNA	lncRNA	5	116	2	2.8038	3.39282	3.98184	2.03038e-4	1.34748e-4	0.0124395	0.0106044
chr1	66955278	66955377	139746	0	+	0.323232	(0.32,0.35]	chr1	15662	72	INTRON	INTRON	MIER1	ENSG00000198160.15	ENST00000355977.10:ENST00000371018.7:ENST00000357692.6:ENST00000371016.5:ENST00000371014.5:ENST00000401041.6:ENST00000355356.3:ENST00000401042.7:ENST00000479067.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	42	2	1.95271	3.3927899999999998	4.83287	0.0431213	0.0095071	0.162255	0.0817766
chr14	103468702	103468802	5826491	0	+	0.34	(0.32,0.35]	chr14	552898	1	SS3_PROX	SS3_PROX:INTRON	MARK3	ENSG00000075413.19	ENST00000678179.1:ENST00000676838.1:ENST00000677348.1:ENST00000677404.1:ENST00000676694.1:ENST00000676938.1:ENST00000678619.1:ENST00000676897.1:ENST00000677214.1:ENST00000677942.1:ENST00000676830.1:ENST00000678999.1:ENST00000677228.1:ENST00000556744.2:ENST00000677104.1:ENST00000679330.1:ENST00000560417.6:ENST00000440884.7:ENST00000676475.1:ENST00000677035.1:ENST00000678022.1:ENST00000677560.1:ENST00000561314.6:ENST00000429436.7:ENST00000677118.1:ENST00000676564.1:ENST00000678169.1:ENST00000678175.1:ENST00000678897.1:ENST00000678278.1:ENST00000676645.1:ENST00000677829.1:ENST00000678302.1:ENST00000677133.1:ENST00000678207.1:ENST00000677360.1:ENST00000676905.1:ENST00000678343.1:ENST00000677347.1:ENST00000678071.1:ENST00000677432.1:ENST00000678237.1:ENST00000677604.1:ENST00000676518.1:ENST00000677051.1:ENST00000677857.1:ENST00000677869.1:ENST00000416682.6:ENST00000303622.13:ENST00000216288.11:ENST00000679105.1:ENST00000553942.5:ENST00000335102.9:ENST00000678091.1:ENST00000561071.5:ENST00000676745.1:ENST00000554627.5:ENST00000558953.1:ENST00000559274.1:ENST00000677410.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	42	2	1.95271	3.3927899999999998	4.83287	0.0431213	0.0095071	0.162255	0.0817766
chr15	58732685	58732785	6193345	0	-	0.34	(0.32,0.35]	chr15	589988	146	INTRON	INTRON	ADAM10	ENSG00000137845.15	ENST00000260408.8:ENST00000402627.5:ENST00000561288.1:ENST00000559053.1:ENST00000558733.5:ENST00000439637.5:ENST00000497846.5:ENST00000558004.1:ENST00000560608.5:ENST00000561149.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	42	2	1.95271	3.3927899999999998	4.83287	0.0431213	0.0095071	0.162255	0.0817766
chr2	152686991	152687090	1246212	0	-	0.333333	(0.32,0.35]	chr2	132338	53	INTRON	INTRON	PRPF40A	ENSG00000196504.20	ENST00000410080.8:ENST00000545856.8:ENST00000696382.1:ENST00000696381.1:ENST00000354363.11:ENST00000493468.7:ENST00000448428.2:ENST00000467114.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	42	2	1.95271	3.3927899999999998	4.83287	0.0431213	0.0095071	0.162255	0.0817766
chr6	107368220	107368320	3181000	0	-	0.35	(0.32,0.35]	chr6	296346	335	INTRON	INTRON	PDSS2	ENSG00000164494.12	ENST00000369037.9:ENST00000369031.4	protein_coding	protein_coding	protein_coding	protein_coding	2	42	2	1.95271	3.3927899999999998	4.83287	0.0431213	0.0095071	0.162255	0.0817766
chr7	10574171	10574271	3482521	0	-	0.35	(0.32,0.35]	chr7	325772	122	INTRON	INTRON	MGC4859	ENSG00000283117.1	ENST00000634803.1	lncRNA	lncRNA	lncRNA	lncRNA	2	42	2	1.95271	3.3927899999999998	4.83287	0.0431213	0.0095071	0.162255	0.0817766
chr17	17338150	17338249	6565203	0	+	0.40404	(0.378,0.408]	chr17	638157	42	INTRON	INTRON	NT5M	ENSG00000205309.14	ENST00000616989.1:ENST00000478373.6:ENST00000389022.9:ENST00000470418.5:ENST00000483704.5:ENST00000582909.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	32	2	2.46373	3.392735	4.32174	0.0382831	0.0132362	0.141795	0.0999551
chr12	6497523	6497623	5069254	0	+	0.41	(0.408,0.44]	chr12	478656	19	INTRON	INTRON	NCAPD2	ENSG00000010292.13	ENST00000541399.1:ENST00000539714.5:ENST00000382457.8:ENST00000539084.5:ENST00000315579.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	64	2	3.10641	3.392635	3.67886	0.00555646	3.86173e-4	0.0648867	0.017761
chr9	132320535	132320635	4366815	0	-	0.41	(0.408,0.44]	chr9	401462	83	INTRON	INTRON	SETX	ENSG00000107290.14	ENST00000224140.6	protein_coding	protein_coding	protein_coding	protein_coding	2	64	2	3.10641	3.392635	3.67886	0.00555646	3.86173e-4	0.0648867	0.017761
chr2	87505520	87505620	826429	0	+	0.44	(0.408,0.44]	chr2	92442	15	INTRON	INTRON	CYTOR:ENSG00000284879	ENSG00000222041.12:ENSG00000284879.1	ENST00000642796.1:ENST00000643589.1:ENST00000642451.1:ENST00000646386.1:ENST00000644478.1:ENST00000409139.6:ENST00000331944.10:ENST00000644125.1:ENST00000643743.1:ENST00000644577.1:ENST00000643276.1:ENST00000409898.2:ENST00000419680.6:ENST00000644976.1:ENST00000643070.1:ENST00000646855.1:ENST00000414584.1:ENST00000455131.5:ENST00000646636.1:ENST00000642293.1:ENST00000423846.5:ENST00000644040.1:ENST00000645138.1:ENST00000437561.2:ENST00000629257.1:ENST00000645729.1	lncRNA	lncRNA	lncRNA	lncRNA	2	65	2	2.95296	3.3925650000000003	3.83217	0.00929354	1.79883e-4	0.0817766	0.0116696
chr1	40393504	40393604	81642	0	+	0.36	(0.35,0.378]	chr1	10556	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	SMAP2	ENSG00000084070.12	ENST00000435168.6:ENST00000372718.8:ENST00000372708.5:ENST00000614549.4	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	2.48657	3.39248	4.29839	0.032907	0.0294717	0.145164	0.128055
chr15	58638202	58638301	6192388	0	-	0.373737	(0.35,0.378]	chr15	589923	45	INTRON	INTRON	ADAM10	ENSG00000137845.15	ENST00000260408.8:ENST00000402627.5:ENST00000561288.1:ENST00000396136.6:ENST00000559053.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	30	2	2.48657	3.39248	4.29839	0.032907	0.0294717	0.145164	0.128055
chr6	34342272	34342372	3084270	0	-	0.36	(0.35,0.378]	chr6	288632	3	SS3_PROX	SS3_PROX:INTRON	NUDT3:RPS10-NUDT3	ENSG00000272325.2:ENSG00000270800.3	ENST00000607016.2:ENST00000639725.1:ENST00000639877.1:ENST00000605528.2	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	2.48657	3.39248	4.29839	0.032907	0.0294717	0.145164	0.128055
chr8	28939338	28939438	3725346	0	+	0.37	(0.35,0.378]	chr8	346257	142	INTRON	INTRON	HMBOX1	ENSG00000147421.18	ENST00000287701.15:ENST00000558662.5:ENST00000519662.5:ENST00000397358.7:ENST00000560599.5:ENST00000523613.5:ENST00000560357.5:ENST00000521516.5:ENST00000519047.5:ENST00000560269.1:ENST00000355231.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	30	2	2.48657	3.39248	4.29839	0.032907	0.0294717	0.145164	0.128055
chrX	71540769	71540869	7680024	0	+	0.46	(0.44,0.476]	chrX	786397	23	INTRON	INTRON	OGT	ENSG00000147162.14	ENST00000373719.8:ENST00000488174.5:ENST00000373701.7:ENST00000498566.3:ENST00000444774.3:ENST00000455587.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	10	245	2	2.51012	3.3924650000000005	4.2748100000000004	2.80663e-4	3.26801e-8	0.015423	7.13685e-5
chr11	46747874	46747974	4947725	0	-	0.51	(0.476,0.515]	chr11	463626	29	INTRON	INTRON	CKAP5	ENSG00000175216.15	ENST00000529230.6:ENST00000312055.9:ENST00000354558.7:ENST00000533413.5:ENST00000525896.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	63	2	3.24596	3.392455	3.53895	0.00322919	0.00075485700000000005	0.0507087	0.0251966
chr6	136289212	136289312	3231122	0	-	0.58	(0.57,1]	chr6	300409	1	SS5_PROX	SS5_PROX:INTRON	BCLAF1	ENSG00000029363.17	ENST00000640069.1:ENST00000531224.6:ENST00000353331.8:ENST00000527536.5:ENST00000527613.5:ENST00000530767.5:ENST00000527759.5:ENST00000534269.5:ENST00000532384.5:ENST00000530429.5:ENST00000628517.2:ENST00000529826.5:ENST00000528229.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	55	2	2.86696	3.3924450000000004	3.91793	2.88184e-4	5.86096e-5	0.0150627	0.00668534
chr1	86878467	86878566	498753	0	-	0.515152	(0.476,0.515]	chr1	59184	100	INTRON	INTRON	SELENOF	ENSG00000183291.18	ENST00000331835.10:ENST00000370554.5:ENST00000648872.1:ENST00000469566.5:ENST00000401030.4:ENST00000497861.5:ENST00000467557.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	63	2	3.29074	3.3924250000000002	3.49411	0.00272563	9.23453e-4	0.0467523	0.0278392
chr3	17715549	17715649	1630163	0	-	0.48	(0.476,0.515]	chr3	168275	133	INTRON	INTRON	TBC1D5	ENSG00000131374.15	ENST00000253692.11:ENST00000696125.1:ENST00000414318.2:ENST00000429383.8:ENST00000415814.6:ENST00000452492.6:ENST00000412981.5:ENST00000428355.5:ENST00000425944.5:ENST00000430169.5:ENST00000445294.5:ENST00000414349.5:ENST00000443499.6:ENST00000444756.5:ENST00000497531.5:ENST00000443386.5:ENST00000446863.5:ENST00000444471.5:ENST00000481396.5:ENST00000423331.6:ENST00000485432.1:ENST00000471679.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	63	2	3.29074	3.3924250000000002	3.49411	0.00272563	9.23453e-4	0.0467523	0.0278392
chr3	33498232	33498331	1651746	0	-	0.262626	[0,0.28]	chr3	169412	21	UTR3	UTR3:EXON_MRNA	CLASP2	ENSG00000163539.18	ENST00000399362.8:ENST00000682230.1:ENST00000468888.6:ENST00000464961.1:ENST00000359576.9:ENST00000650653.1:ENST00000480013.6:ENST00000461133.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	48	2	1.8986	3.3924250000000002	4.88625	0.0531512	0.0173315	0.179787	0.104099
chr5	54226611	54226711	2620078	0	-	0.25	[0,0.28]	chr5	248860	543	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2:ENST00000505630.5:ENST00000505383.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	48	2	1.8986	3.3924250000000002	4.88625	0.0531512	0.0173315	0.179787	0.104099
chr5	138162646	138162741	2731246	0	-	0.326316	(0.32,0.35]	chr5	257108	1	SS5_PROX	SS5_PROX:INTRON	BRD8	ENSG00000112983.18	ENST00000254900.10:ENST00000402931.5:ENST00000230901.9:ENST00000454473.5:ENST00000418329.5:ENST00000441656.5:ENST00000411594.6:ENST00000512140.5:ENST00000515014.5:ENST00000506167.5:ENST00000511898.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	73	2	1.60034	3.392245	5.18415	0.0221816	0.00333629	0.124191	0.0512081
chr14	29067265	29067365	5671321	0	+	0.28	[0,0.28]	chr14	540435	39	INTRON	INTRON	ENSG00000258028	ENSG00000258028.3	ENST00000652634.1	lncRNA	lncRNA	lncRNA	lncRNA	1	41	2	2.49527	3.3922100000000004	4.28915	0.0436497	0.0319595	0.14882	0.14477
chr15	42519029	42519128	6009843	0	+	0.363636	(0.35,0.378]	chr15	572172	33	INTRON	INTRON	SNAP23	ENSG00000092531.10	ENST00000561526.5:ENST00000568451.5:ENST00000563765.5:ENST00000349777.5:ENST00000249647.8:ENST00000564153.5:ENST00000567094.5:ENST00000566327.5:ENST00000568331.5:ENST00000566035.5:ENST00000568859.5:ENST00000568514.5:ENST00000397138.5:ENST00000563873.5:ENST00000563830.2:ENST00000568841.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	30	2	2.30249	3.3921650000000003	4.48184	0.0519726	0.0191702	0.176696	0.108861
chr15	72691008	72691107	6060517	0	+	0.363636	(0.35,0.378]	chr15	576947	38	INTRON	INTRON	BBS4	ENSG00000140463.14	ENST00000395205.6:ENST00000566400.5:ENST00000565160.5:ENST00000561914.5:ENST00000268057.9:ENST00000567279.5:ENST00000566938.5:ENST00000569440.5:ENST00000563600.5:ENST00000562084.5:ENST00000569338.5:ENST00000566829.1:ENST00000564239.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	30	2	2.30249	3.3921650000000003	4.48184	0.0519726	0.0191702	0.176696	0.108861
chr3	184162504	184162604	1581697	0	+	0.36	(0.35,0.378]	chr3	163288	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	DVL3	ENSG00000161202.20	ENST00000313143.9:ENST00000435708.6:ENST00000462665.5:ENST00000431765.6:ENST00000649364.1:ENST00000423300.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	30	2	2.30249	3.3921650000000003	4.48184	0.0519726	0.0191702	0.176696	0.108861
chr6	32122839	32122938	3081456	0	-	0.373737	(0.35,0.378]	chr6	287845	11	INTRON	INTRON	ATF6B	ENSG00000213676.13	ENST00000375201.8:ENST00000375203.8:ENST00000453203.2:ENST00000495579.5:ENST00000485314.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	30	2	2.30249	3.3921650000000003	4.48184	0.0519726	0.0191702	0.176696	0.108861
chr6	36076701	36076794	2853555	0	+	0.365591	(0.35,0.378]	chr6	269661	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	MAPK14	ENSG00000112062.11	ENST00000229795.7:ENST00000468133.5:ENST00000229794.9:ENST00000310795.8:ENST00000491957.5:ENST00000496250.5:ENST00000474429.5:ENST00000490379.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	30	2	2.30249	3.3921650000000003	4.48184	0.0519726	0.0191702	0.176696	0.108861
chr7	134646937	134647034	3426338	0	+	0.371134	(0.35,0.378]	chr7	319470	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	BPGM	ENSG00000172331.12	ENST00000418040.5:ENST00000393132.2:ENST00000344924.8	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	2.30249	3.3921650000000003	4.48184	0.0519726	0.0191702	0.176696	0.108861
chr7	127749194	127749294	3403382	0	+	0.46	(0.44,0.476]	chr7	318134	274	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000468166.5:ENST00000465900.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	40	2	2.44514	3.3920649999999997	4.33899	0.0206616	0.0087381	0.110999	0.0845538
chr22	40800768	40800868	7590193	0	-	0.43	(0.408,0.44]	chr22	777203	7	INTRON	INTRON	SLC25A17	ENSG00000100372.15	ENST00000544408.5:ENST00000435456.7:ENST00000491545.5:ENST00000263255.10:ENST00000447566.5:ENST00000420970.5:ENST00000430221.5:ENST00000427084.5:ENST00000458600.5:ENST00000443810.5:ENST00000412879.5:ENST00000426396.5:ENST00000434193.5:ENST00000449676.5:ENST00000434185.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	114	2	3.20009	3.3919949999999996	3.5839	4.59843e-4	3.69161e-5	0.01978	0.00486659
chr22	19118732	19118832	7551978	0	-	0.36	(0.35,0.378]	chr22	771903	289	INTRON	INTRON	DGCR2	ENSG00000070413.20	ENST00000537045.5:ENST00000545799.5:ENST00000263196.12:ENST00000389262.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	44	2	1.75561	3.391965	5.02832	0.0739399	0.00156444	0.190914	0.0365263
chr5	16454448	16454547	2568597	0	-	0.414141	(0.408,0.44]	chr5	246169	9	INTRON	INTRON	ZNF622	ENSG00000173545.5	ENST00000308683.3	protein_coding	protein_coding	protein_coding	protein_coding	4	53	2	1.70409	3.39196	5.07983	0.028108	0.00247652	0.137011	0.0446195
chr6	63670244	63670344	2883635	0	+	0.46	(0.44,0.476]	chr6	273559	231	INTRON	INTRON	PHF3	ENSG00000118482.12	ENST00000262043.8:ENST00000506783.5:ENST00000481385.6:ENST00000515594.5:ENST00000494284.6:ENST00000509876.5:ENST00000509330.5:ENST00000393387.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	64	2	3.02751	3.391795	3.75608	0.00715968	2.6487e-4	0.0723634	0.0144071
chr10	32951074	32951174	4592636	0	-	0.34	(0.32,0.35]	chr10	423511	120	INTRON	INTRON	ITGB1	ENSG00000150093.20	ENST00000609742.3:ENST00000678989.1:ENST00000677363.1:ENST00000302278.8:ENST00000396033.6:ENST00000417122.7:ENST00000676895.1:ENST00000678120.1:ENST00000676623.1:ENST00000678952.1:ENST00000677999.1:ENST00000679187.1:ENST00000678479.1:ENST00000676964.1:ENST00000488494.6:ENST00000488427.2:ENST00000678591.1:ENST00000678943.1:ENST00000437302.6:ENST00000678701.1:ENST00000678766.1:ENST00000676659.1:ENST00000677310.1:ENST00000474568.6:ENST00000676460.1:ENST00000475184.6:ENST00000484088.5:ENST00000480226.5:ENST00000534049.5:ENST00000528877.5:ENST00000414670.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	75	2	2.89743	3.391765	3.8861	0.0127608	1.80108e-4	0.0926667	0.0116696
chr5	177134665	177134745	2553703	0	+	0.6125	(0.57,1]	chr5	243913	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NSD1	ENSG00000165671.22	ENST00000508896.6:ENST00000689549.1:ENST00000354179.9:ENST00000686993.1:ENST00000689326.1:ENST00000439151.7:ENST00000602285.1:ENST00000510954.6:ENST00000689345.1:ENST00000511258.6:ENST00000347982.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	38	2	2.91889	3.3917450000000002	3.8646	0.00719009	8.0672e-5	0.0756118	0.00804467
chr21	32344269	32344369	7438303	0	-	0.26	[0,0.28]	chr21	758812	3	SS5_PROX	SS5_PROX:INTRON	URB1	ENSG00000142207.7	ENST00000382751.4	protein_coding	protein_coding	protein_coding	protein_coding	1	42	2	2.59548	3.3916899999999996	4.1879	0.0396579	0.0346067	0.161534	0.136649
chr7	1105531	1105631	3461515	0	-	0.27	[0,0.28]	chr7	323583	504	INTRON	INTRON	C7orf50	ENSG00000146540.15	ENST00000357429.10:ENST00000397100.6:ENST00000397098.8:ENST00000488073.1:ENST00000491163.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	42	2	2.59548	3.3916899999999996	4.1879	0.0396579	0.0346067	0.161534	0.136649
chrX	40051916	40052012	7804376	0	-	0.25	[0,0.28]	chrX	795720	8	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	BCOR	ENSG00000183337.18	ENST00000413905.6:ENST00000378463.5:ENST00000378455.8:ENST00000397354.7:ENST00000342274.8:ENST00000615339.2:ENST00000680831.1:ENST00000378444.9:ENST00000679513.1:ENST00000672922.2:ENST00000442018.6:ENST00000673391.1:ENST00000427012.3:ENST00000672265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	42	2	2.59548	3.3916899999999996	4.1879	0.0396579	0.0346067	0.161534	0.136649
chr16	16648805	16648905	6312353	0	+	0.46	(0.44,0.476]	chr16	604111	3	SS5_PROX	SS5_PROX:INTRON	ENSG00000260126	ENSG00000260126.2	ENST00000567465.2	lncRNA	lncRNA	lncRNA	lncRNA	6	138	2	2.71816	3.39163	4.0651	2.38928e-4	5.16491e-5	0.0142132	0.00585477
chr1	52458449	52458549	457593	0	-	0.32	(0.28,0.32]	chr1	54981	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	TUT4	ENSG00000134744.14	ENST00000371544.7:ENST00000257177.9:ENST00000469810.1:ENST00000528642.5:ENST00000497120.1:ENST00000484723.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	36	2	2.2609	3.391615	4.52233	0.0671429	0.0129279	0.183051	0.0990564
chr1	61206055	61206155	128633	0	+	0.3	(0.28,0.32]	chr1	14782	21	INTRON	INTRON	NFIA	ENSG00000162599.17	ENST00000371191.5:ENST00000664495.1:ENST00000476646.5:ENST00000407417.7:ENST00000479364.1:ENST00000371189.8:ENST00000670151.1:ENST00000664149.1:ENST00000662015.1:ENST00000403491.8:ENST00000371187.7:ENST00000485903.6:ENST00000371185.6:ENST00000371184.6:ENST00000663597.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	36	2	2.2609	3.391615	4.52233	0.0671429	0.0129279	0.183051	0.0990564
chr11	17354490	17354588	4748877	0	+	0.316327	(0.28,0.32]	chr11	439578	21	INTRON	INTRON	NCR3LG1	ENSG00000188211.9	ENST00000338965.9:ENST00000530403.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	51	2	2.09794	3.391605	4.68527	0.0340483	0.00819419	0.134863	0.0810802
chr19	15327536	15327636	7147356	0	-	0.3	(0.28,0.32]	chr19	721965	472	INTRON	INTRON	BRD4	ENSG00000141867.19	ENST00000679869.1:ENST00000360016.9:ENST00000594841.5:ENST00000597315.5:ENST00000601941.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	400	2	2.80826	3.3913900000000003	3.97452	1.30721e-4	7.75066e-8	0.0103941	1.21354e-4
chr1	193041549	193041649	612690	0	-	0.34	(0.32,0.35]	chr1	72474	115	INTRON	INTRON	UCHL5	ENSG00000116750.14	ENST00000367455.8:ENST00000367454.6:ENST00000367450.7:ENST00000367451.8:ENST00000367449.5:ENST00000367448.5:ENST00000421683.1	protein_coding	protein_coding	protein_coding	protein_coding	2	42	2	2.01768	3.3913450000000003	4.76501	0.0361337	0.0114287	0.152563	0.0886611
chr11	67214839	67214939	4813410	0	+	0.33	(0.32,0.35]	chr11	448141	1	SS3_PROX	SS3_PROX:INTRON	KDM2A	ENSG00000173120.15	ENST00000529006.7:ENST00000398645.6:ENST00000308783.9:ENST00000528380.1:ENST00000526258.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	42	2	2.01768	3.3913450000000003	4.76501	0.0361337	0.0114287	0.152563	0.0886611
chr17	42470159	42470218	6611403	0	+	0.338983	(0.32,0.35]	chr17	644090	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	ATP6V0A1	ENSG00000033627.17	ENST00000393829.6:ENST00000588629.1:ENST00000343619.9:ENST00000537728.5:ENST00000588901.5:ENST00000264649.10:ENST00000585525.5:ENST00000544137.5:ENST00000589727.5:ENST00000587824.5:ENST00000592324.1:ENST00000587375.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	42	2	2.01768	3.3913450000000003	4.76501	0.0361337	0.0114287	0.152563	0.0886611
chr2	38326605	38326705	1098835	0	-	0.35	(0.32,0.35]	chr2	117856	72	INTRON	INTRON	ATL2	ENSG00000119787.14	ENST00000378954.9:ENST00000406122.5:ENST00000405384.6:ENST00000402054.5:ENST00000419554.6:ENST00000651368.1:ENST00000452935.6:ENST00000449130.5:ENST00000443098.5:ENST00000456736.5:ENST00000474535.2:ENST00000472097.1:ENST00000451483.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	42	2	2.01768	3.3913450000000003	4.76501	0.0361337	0.0114287	0.152563	0.0886611
chr4	56492167	56492267	1963183	0	+	0.35	(0.32,0.35]	chr4	197005	2	INTRON	INTRON	SRP72	ENSG00000174780.17	ENST00000642900.1:ENST00000510663.6:ENST00000647432.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	42	2	2.01768	3.3913450000000003	4.76501	0.0361337	0.0114287	0.152563	0.0886611
chr16	29695895	29695995	6335549	0	+	0.47	(0.44,0.476]	chr16	606820	2	EXON_MRNA	EXON_MRNA:INTRON	QPRT	ENSG00000103485.19	ENST00000449759.2:ENST00000219771.7:ENST00000395384.9:ENST00000562473.1:ENST00000564967.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	48	2	2.1762	3.3913349999999998	4.60647	0.0102339	0.0092251	0.0855292	0.0850389
chrX	110026940	110027040	7700276	0	+	0.32	(0.28,0.32]	chrX	788130	224	INTRON	INTRON	TMEM164	ENSG00000157600.12	ENST00000372072.7:ENST00000471255.5:ENST00000372073.5:ENST00000372068.7:ENST00000288381.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	80	2	3.35108	3.39133	3.43158	0.00244075	0.00221345	0.0445752	0.0435144
chr7	112452329	112452420	3381798	0	+	0.527473	(0.515,0.57]	chr7	316761	4	UTR5	UTR5:EXON_MRNA:INTRON	IFRD1	ENSG00000006652.15	ENST00000675578.1:ENST00000621379.4:ENST00000005558.8:ENST00000443101.6:ENST00000445335.1:ENST00000429071.5:ENST00000403825.8:ENST00000674915.1:ENST00000674887.1:ENST00000675041.1:ENST00000675717.1:ENST00000476927.5:ENST00000535603.5:ENST00000440625.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	89	2	2.81972	3.3912699999999996	3.96282	5.44499e-4	7.05073e-5	0.0215237	0.00694412
chr22	20614135	20614235	7557658	0	-	0.52	(0.515,0.57]	chr22	772875	4	SS3_PROX	SS3_PROX:INTRON	SMPD4P1	ENSG00000223553.6	ENST00000416717.6	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	2	55	2	3.35609	3.3912649999999998	3.42644	0.00174131	0.00106731	0.0375363	0.0300133
chr1	27832916	27833016	55057	0	+	0.33	(0.32,0.35]	chr1	7111	1	SS5_PROX	SS5_PROX:INTRON	PPP1R8	ENSG00000117751.18	ENST00000311772.10:ENST00000236412.11:ENST00000373931.8:ENST00000431586.1	protein_coding	protein_coding	protein_coding	protein_coding	2	42	2	1.88468	3.3911800000000003	4.89768	0.0515071	0.00793135	0.176696	0.076155
chr7	44580577	44580675	3528441	0	-	0.326531	(0.32,0.35]	chr7	329082	8	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	TMED4	ENSG00000158604.15	ENST00000289577.9:ENST00000457408.7:ENST00000481238.1:ENST00000477639.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	42	2	1.88468	3.3911800000000003	4.89768	0.0515071	0.00793135	0.176696	0.076155
chr9	125271281	125271381	4198350	0	+	0.35	(0.32,0.35]	chr9	383148	19	INTRON	INTRON	GAPVD1	ENSG00000165219.23	ENST00000497580.5:ENST00000461379.5:ENST00000297933.11:ENST00000394084.5:ENST00000469528.5:ENST00000470056.5:ENST00000394105.6:ENST00000394083.6:ENST00000495955.5:ENST00000467750.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	42	2	1.88468	3.3911800000000003	4.89768	0.0515071	0.00793135	0.176696	0.076155
chr16	47499994	47500094	6343690	0	+	0.42	(0.408,0.44]	chr16	608860	1	SS5_PROX	SS5_PROX:INTRON	PHKB	ENSG00000102893.17	ENST00000566037.6:ENST00000566044.5:ENST00000299167.12:ENST00000696809.1:ENST00000323584.10:ENST00000565424.2:ENST00000567402.5:ENST00000563376.5:ENST00000570047.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	106	2	3.29421	3.39107	3.48793	0.00130904	3.47956e-5	0.0331539	0.00469546
chr2	241678251	241678351	1349349	0	-	0.53	(0.515,0.57]	chr2	141787	4	SS5_PROX	SS5_PROX:INTRON	DTYMK	ENSG00000168393.13	ENST00000400770.6:ENST00000305784.7:ENST00000445261.5:ENST00000432348.5:ENST00000420144.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	73	2	3.00693	3.390915	3.7749	7.26845e-4	2.59829e-4	0.0245647	0.0148796
chr10	87083175	87083274	4659722	0	-	0.323232	(0.32,0.35]	chr10	429378	34	INTRON	INTRON	GLUD1	ENSG00000148672.10	ENST00000277865.5:ENST00000684699.1:ENST00000682396.1:ENST00000683022.1:ENST00000683269.1:ENST00000683256.1:ENST00000681987.1:ENST00000684032.1:ENST00000684338.1:ENST00000684201.1:ENST00000682507.1:ENST00000683783.1:ENST00000681988.1:ENST00000682622.1:ENST00000684546.1:ENST00000684372.1:ENST00000682833.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	35	2	2.51061	3.39087	4.27113	0.0364463	0.0199982	0.138959	0.120668
chr16	46618204	46618288	6478088	0	-	0.321429	(0.32,0.35]	chr16	626608	1	CDS	CDS:EXON_MRNA	SHCBP1	ENSG00000171241.9	ENST00000303383.8:ENST00000566016.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	35	2	2.51061	3.39087	4.27113	0.0364463	0.0199982	0.138959	0.120668
chr18	1358125	1358225	6941762	0	-	0.35	(0.32,0.35]	chr18	686589	43	INTRON	INTRON	LINC00470	ENSG00000132204.14	ENST00000657423.1:ENST00000657618.1:ENST00000584090.5:ENST00000660947.1:ENST00000669242.1:ENST00000660475.1:ENST00000653775.1:ENST00000661931.1:ENST00000412816.7:ENST00000577867.5:ENST00000584492.5:ENST00000667416.1:ENST00000661852.1:ENST00000657919.1:ENST00000661646.1:ENST00000667776.1:ENST00000654559.1:ENST00000661233.1:ENST00000653213.1:ENST00000659094.1:ENST00000660964.1:ENST00000577403.6:ENST00000660358.1:ENST00000669153.1:ENST00000657121.1:ENST00000655957.1:ENST00000659289.1:ENST00000665133.1:ENST00000671558.1:ENST00000666542.1:ENST00000663512.1:ENST00000582862.6:ENST00000578835.5:ENST00000669312.1:ENST00000581430.5:ENST00000581212.1:ENST00000658090.1:ENST00000667225.1	lncRNA	lncRNA	lncRNA	lncRNA	1	35	2	2.51061	3.39087	4.27113	0.0364463	0.0199982	0.138959	0.120668
chr2	229829588	229829688	1340728	0	-	0.35	(0.32,0.35]	chr2	140414	3	SS3_PROX	SS3_PROX:INTRON	TRIP12	ENSG00000153827.14	ENST00000675453.1:ENST00000675903.1:ENST00000283943.9:ENST00000675423.1:ENST00000389044.8:ENST00000389045.7:ENST00000479037.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	35	2	2.51061	3.39087	4.27113	0.0364463	0.0199982	0.138959	0.120668
chr5	143366504	143366604	2742158	0	-	0.33	(0.32,0.35]	chr5	258577	520	INTRON	INTRON	NR3C1	ENSG00000113580.15	ENST00000343796.6:ENST00000394464.7:ENST00000415690.6:ENST00000424646.6:ENST00000504572.5:ENST00000394466.6:ENST00000231509.7:ENST00000652686.1:ENST00000503201.1:ENST00000504336.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	35	2	2.51061	3.39087	4.27113	0.0364463	0.0199982	0.138959	0.120668
chr16	53254605	53254671	6352747	0	+	0.287879	(0.28,0.32]	chr16	609792	1	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	CHD9	ENSG00000177200.18	ENST00000447540.6:ENST00000566029.5:ENST00000615216.4:ENST00000564845.5:ENST00000398510.7:ENST00000565803.2:ENST00000219084.10:ENST00000562806.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	53	2	2.25939	3.39086	4.52233	0.021772	0.0129279	0.11491	0.0990564
chr8	47966685	47966774	3752093	0	+	0.280899	(0.28,0.32]	chr8	348978	3	SS5_PROX	SS5_PROX:INTRON	MCM4	ENSG00000104738.18	ENST00000649838.1:ENST00000648407.1:ENST00000649919.1:ENST00000262105.6:ENST00000649973.1:ENST00000648519.1:ENST00000650216.1:ENST00000647877.1:ENST00000520637.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	53	2	2.25939	3.39086	4.52233	0.021772	0.0129279	0.11491	0.0990564
chr1	109374785	109374885	520788	0	-	0.48	(0.476,0.515]	chr1	61195	48	INTRON	INTRON	SORT1	ENSG00000134243.12	ENST00000538502.5:ENST00000256637.8:ENST00000493736.5:ENST00000482236.5:ENST00000633956.1:ENST00000471996.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	49	2	2.25138	3.3908050000000003	4.53023	0.0119748	0.00692374	0.0899583	0.0753208
chr8	26311012	26311112	3716291	0	+	0.32	(0.28,0.32]	chr8	345372	60	INTRON	INTRON	PPP2R2A	ENSG00000221914.11	ENST00000380737.8:ENST00000520329.5:ENST00000518254.5:ENST00000524169.5:ENST00000518397.5:ENST00000522535.5:ENST00000665949.1:ENST00000522150.5:ENST00000523473.5:ENST00000521095.5:ENST00000660435.1:ENST00000523925.5:ENST00000524099.5:ENST00000315985.7:ENST00000519636.5:ENST00000522482.5:ENST00000521557.5:ENST00000519439.5:ENST00000521484.5:ENST00000523964.5:ENST00000667651.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	91	2	1.47985	3.3906899999999998	5.30153	0.0239637	0.00332518	0.129293	0.0512081
chr5	232385	232484	2312358	0	+	0.575758	(0.57,1]	chr5	223655	10	INTRON	INTRON	SDHA	ENSG00000073578.18	ENST00000504309.5:ENST00000505555.5:ENST00000510361.5:ENST00000264932.11:ENST00000504824.5:ENST00000514027.5:ENST00000514233.1:ENST00000515752.5:ENST00000512962.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	37	2	3.02967	3.39066	3.75165	0.00471306	1.54884e-4	0.0631419	0.0113252
chr6	20408430	20408530	2827513	0	+	0.38	(0.378,0.408]	chr6	265575	42	INTRON	INTRON	E2F3	ENSG00000112242.16	ENST00000346618.8:ENST00000535432.2	protein_coding	protein_coding	protein_coding	protein_coding	2	39	2	2.04292	3.3906549999999998	4.73839	0.0326035	0.00837252	0.145164	0.0774402
chr1	50520778	50520878	447844	0	-	0.46	(0.44,0.476]	chr1	54177	286	INTRON	INTRON	FAF1	ENSG00000185104.21	ENST00000396153.7:ENST00000494400.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	32	2	2.67572	3.3905600000000002	4.1054	0.0220205	0.0212064	0.123836	0.113017
chr13	60131257	60131357	5604048	0	-	0.47	(0.44,0.476]	chr13	535541	187	INTRON	INTRON	DIAPH3	ENSG00000139734.19	ENST00000400324.9:ENST00000377908.6:ENST00000400319.5:ENST00000400320.5:ENST00000267215.8	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	2.67572	3.3905600000000002	4.1054	0.0220205	0.0212064	0.123836	0.113017
chr19	57695532	57695632	7104868	0	+	0.47	(0.44,0.476]	chr19	713112	50	INTRON	INTRON	ZNF551	ENSG00000204519.11	ENST00000596085.1	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	2.67572	3.3905600000000002	4.1054	0.0220205	0.0212064	0.123836	0.113017
chr6	12104513	12104612	2815152	0	+	0.444444	(0.44,0.476]	chr6	264806	149	INTRON	INTRON	HIVEP1	ENSG00000095951.17	ENST00000491710.5:ENST00000487103.5:ENST00000379388.7:ENST00000627968.2:ENST00000541134.5:ENST00000442081.6:ENST00000478545.1	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	2.67572	3.3905600000000002	4.1054	0.0220205	0.0212064	0.123836	0.113017
chr10	96853001	96853101	4503172	0	+	0.38	(0.378,0.408]	chr10	414529	188	INTRON	INTRON	LCOR	ENSG00000196233.14	ENST00000676067.1:ENST00000676257.1:ENST00000676187.1:ENST00000675151.1:ENST00000675687.1:ENST00000675251.1:ENST00000676123.1:ENST00000371103.8:ENST00000675471.1:ENST00000421806.4:ENST00000675902.1:ENST00000540664.6:ENST00000676414.1:ENST00000675537.1:ENST00000675117.1:ENST00000675125.1:ENST00000356016.7:ENST00000371097.8:ENST00000676381.1:ENST00000674796.1:ENST00000674725.1:ENST00000675971.1:ENST00000676373.1:ENST00000676314.1:ENST00000675915.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	39	2	1.97143	3.390555	4.80968	0.0398704	0.00679828	0.161534	0.0711802
chr12	120890190	120890290	5435766	0	-	0.38	(0.378,0.408]	chr12	519663	547	INTRON	INTRON	SPPL3	ENSG00000157837.16	ENST00000353487.7:ENST00000536996.5:ENST00000543608.5:ENST00000543854.5	protein_coding	protein_coding	protein_coding	protein_coding	2	39	2	1.97143	3.390555	4.80968	0.0398704	0.00679828	0.161534	0.0711802
chr18	9197567	9197665	6869541	0	+	0.27551	[0,0.28]	chr18	680574	15	INTRON	INTRON	ANKRD12	ENSG00000101745.17	ENST00000262126.9:ENST00000540578.6:ENST00000581635.5:ENST00000400020.7:ENST00000581758.1:ENST00000546007.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	60	2	1.95669	3.39051	4.82433	0.0237518	0.0200334	0.129075	0.109608
chr6	4020743	4020843	3048163	0	-	0.36	(0.35,0.378]	chr6	283667	3	SS5_PROX	SS5_PROX:INTRON	ENSG00000230648	ENSG00000230648.1	ENST00000415144.1	lncRNA	lncRNA	lncRNA	lncRNA	2	44	2	1.81767	3.390485	4.9633	0.0640429	0.00198929	0.177882	0.0411469
chr17	72902262	72902362	6833044	0	-	0.44	(0.408,0.44]	chr17	675178	521	INTRON	INTRON	SLC39A11	ENSG00000133195.12	ENST00000255559.8:ENST00000542342.6:ENST00000582769.5:ENST00000579491.1:ENST00000584129.1:ENST00000579732.5:ENST00000580557.5:ENST00000583146.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	58	2	1.53812	3.3903950000000003	5.24267	0.0501609	4.83767e-4	0.156383	0.0199261
chr1	39880874	39880973	428247	0	-	0.464646	(0.44,0.476]	chr1	52034	44	INTRON	INTRON	TRIT1	ENSG00000043514.17	ENST00000316891.10:ENST00000648678.1:ENST00000537440.5:ENST00000372818.5:ENST00000462797.5:ENST00000441669.6:ENST00000495175.6:ENST00000491865.5:ENST00000541099.5:ENST00000492612.6:ENST00000489945.5:ENST00000486825.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	46	2	1.69402	3.390305	5.08659	0.0456129	0.00226401	0.164236	0.0425438
chr2	222888673	222888768	1021489	0	+	0.378947	(0.378,0.408]	chr2	109262	4	INTRON	INTRON	ACSL3	ENSG00000123983.15	ENST00000392066.7:ENST00000407441.5:ENST00000680251.1:ENST00000679541.1:ENST00000681906.1:ENST00000679545.1:ENST00000679932.1:ENST00000680100.1:ENST00000680475.1:ENST00000680525.1:ENST00000680420.1:ENST00000681326.1:ENST00000681292.1:ENST00000681017.1:ENST00000680382.1:ENST00000535678.2:ENST00000680395.1:ENST00000680736.1:ENST00000679546.1:ENST00000680147.1:ENST00000357430.8:ENST00000681009.1:ENST00000679514.1:ENST00000681697.1:ENST00000680921.1:ENST00000681383.1:ENST00000413316.1:ENST00000679558.1:ENST00000680684.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	41	2	2.46345	3.39022	4.31699	0.0250408	0.00827342	0.12011	0.0813266
chr19	34446311	34446410	7053306	0	+	0.40404	(0.378,0.408]	chr19	703531	8	INTRON	INTRON	UBA2	ENSG00000126261.13	ENST00000586313.1:ENST00000590048.6:ENST00000246548.9:ENST00000439527.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	88	2	3.30717	3.3901950000000003	3.47322	0.00147803	1.8574e-4	0.0348908	0.0118964
chr7	119890804	119890904	3630249	0	-	0.59	(0.57,1]	chr7	337335	896	INTRON	INTRON	LINC02476	ENSG00000225546.6	ENST00000660268.1:ENST00000431071.5:ENST00000426413.2	lncRNA	lncRNA	lncRNA	lncRNA	11	144	2	2.93832	3.3901700000000003	3.84202	3.38173e-6	3.44581e-8	0.00120054	6.88568e-5
chr16	23880595	23880695	6324206	0	+	0.35	(0.32,0.35]	chr16	605697	114	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000645517.1:ENST00000498739.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	71	2	1.40199	3.39016	5.37833	0.0432025	0.00174321	0.162255	0.0375363
chr9	125329677	125329777	4198948	0	+	0.52	(0.515,0.57]	chr9	383221	2	SS3_PROX	SS3_PROX:INTRON	GAPVD1	ENSG00000165219.23	ENST00000497580.5:ENST00000297933.11:ENST00000470056.5:ENST00000394105.6:ENST00000394083.6:ENST00000495955.5:ENST00000467750.5:ENST00000394104.6:ENST00000312123.13:ENST00000431329.5:ENST00000436712.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	45	2	2.36534	3.39016	4.41498	0.0106866	0.00404547	0.0861859	0.0578376
chr11	31507259	31507359	4939218	0	-	0.33	(0.32,0.35]	chr11	462601	187	INTRON	INTRON	IMMP1L	ENSG00000148950.11	ENST00000532287.6:ENST00000534812.5:ENST00000526776.5:ENST00000278200.5:ENST00000648582.1:ENST00000533642.1:ENST00000527184.5:ENST00000528161.5:ENST00000532624.5:ENST00000529749.5:ENST00000530023.5:ENST00000531693.1:ENST00000532668.1:ENST00000533921.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	176	2	2.21181	3.3900099999999997	4.56821	0.00115858	1.13991e-5	0.0313807	0.00267843
chr4	145099018	145099117	2063854	0	+	0.373737	(0.35,0.378]	chr4	204187	2	INTRON	INTRON	ABCE1	ENSG00000164163.11	ENST00000502586.5:ENST00000296577.9:ENST00000507193.5:ENST00000502803.5:ENST00000506506.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	36	2	2.83709	3.3899999999999997	3.94291	0.0374229	0.01435	0.155878	0.0966737
chr8	48038453	48038553	3752537	0	+	0.49	(0.476,0.515]	chr8	349050	30	INTRON	INTRON	UBE2V2	ENSG00000169139.12	ENST00000523432.5:ENST00000521346.5:ENST00000523111.7:ENST00000518360.5:ENST00000517630.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	31	2	2.56033	3.3899850000000002	4.21964	0.0287634	0.0167715	0.127066	0.110511
chr8	140666089	140666188	4076657	0	-	0.515152	(0.476,0.515]	chr8	370318	7	INTRON	INTRON	PTK2	ENSG00000169398.20	ENST00000696786.1:ENST00000522684.5:ENST00000395218.3:ENST00000519654.5:ENST00000521059.5:ENST00000517887.5:ENST00000519465.5:ENST00000519993.5:ENST00000340930.7:ENST00000523539.5:ENST00000517712.5:ENST00000519419.5:ENST00000524202.5:ENST00000430260.6:ENST00000521986.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	31	2	2.56033	3.3899850000000002	4.21964	0.0287634	0.0167715	0.127066	0.110511
chr9	127453178	127453278	4200312	0	+	0.5	(0.476,0.515]	chr9	383446	3	SS3_PROX	SS3_PROX:INTRON	LRSAM1	ENSG00000148356.15	ENST00000675224.1:ENST00000373324.8:ENST00000674771.1:ENST00000675641.1:ENST00000498513.6:ENST00000675572.1:ENST00000300417.11:ENST00000674784.1:ENST00000675789.1:ENST00000676349.1:ENST00000676336.1:ENST00000676170.1:ENST00000675448.1:ENST00000323301.8:ENST00000675141.1:ENST00000472068.2:ENST00000674516.1:ENST00000675883.1:ENST00000676014.1:ENST00000486587.2:ENST00000674970.1:ENST00000675253.1:ENST00000675657.1:ENST00000676318.1:ENST00000675945.1:ENST00000485704.2:ENST00000675213.1:ENST00000373322.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	31	2	2.56033	3.3899850000000002	4.21964	0.0287634	0.0167715	0.127066	0.110511
chr3	6654728	6654828	1357791	0	+	0.58	(0.57,1]	chr3	142522	703	INTRON	INTRON	ENSG00000189229	ENSG00000189229.12	ENST00000433639.1:ENST00000655754.1:ENST00000658468.1:ENST00000669512.1:ENST00000667028.1:ENST00000655541.1:ENST00000668643.1:ENST00000671568.1:ENST00000671036.1:ENST00000669798.1:ENST00000655753.1:ENST00000655856.1:ENST00000658398.1:ENST00000661518.1:ENST00000661279.1:ENST00000655495.1:ENST00000663041.1:ENST00000659827.1:ENST00000667716.1:ENST00000668416.1:ENST00000658133.1:ENST00000342990.4:ENST00000660054.1:ENST00000671370.1	lncRNA	lncRNA	lncRNA	lncRNA	3	47	2	2.81057	3.38996	3.96935	0.00169295	4.27649e-5	0.0381936	0.00555805
chr1	31937254	31937354	414427	0	-	0.45	(0.44,0.476]	chr1	49943	1	SS5_PROX	SS5_PROX:INTRON	PTP4A2	ENSG00000184007.22	ENST00000647444.2:ENST00000649841.1:ENST00000468531.1:ENST00000534796.5:ENST00000532289.1:ENST00000526960.1:ENST00000524384.5:ENST00000528840.1:ENST00000494444.2:ENST00000529477.5:ENST00000533408.1:ENST00000475464.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	186	2	3.35885	3.389945	3.42104	4.16949e-5	4.06572e-6	0.00547677	0.0013379
chr22	50400909	50401009	7544770	0	+	0.34	(0.32,0.35]	chr22	771041	64	INTRON	INTRON	PPP6R2	ENSG00000100239.16	ENST00000359139.7:ENST00000395741.7:ENST00000612753.5:ENST00000395744.7:ENST00000216061.9	protein_coding	protein_coding	protein_coding	protein_coding	2	73	2	3.20216	3.389735	3.57731	0.00480708	7.67492e-4	0.0602209	0.0254532
chr21	14515805	14515903	7427896	0	-	0.285714	(0.28,0.32]	chr21	757750	29	INTRON	INTRON	SAMSN1	ENSG00000155307.19	ENST00000647101.1:ENST00000644288.1:ENST00000400564.5:ENST00000400566.6:ENST00000285670.7:ENST00000619120.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	240	2	2.91689	3.38972	3.86255	4.31253e-5	3.4094e-5	0.00531871	0.00493089
chr1	145920002	145920101	210912	0	+	0.525253	(0.515,0.57]	chr1	23126	11	EXON_LNCRNA	EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GNRHR2	ENSG00000211451.12	ENST00000312753.9:ENST00000604273.1:ENST00000619161.5:ENST00000361928.2:ENST00000581100.6	transcribed_unitary_pseudogene	processed_transcript	transcribed_unitary_pseudogene	processed_transcript:transcribed_unitary_pseudogene	1	28	2	2.60899	3.3896800000000002	4.17037	0.0232669	0.0139194	0.118148	0.10247
chr12	55984403	55984502	5144968	0	+	0.525253	(0.515,0.57]	chr12	485924	31	INTRON	INTRON	RAB5B	ENSG00000111540.16	ENST00000553116.5:ENST00000549505.5:ENST00000360299.10:ENST00000546810.1:ENST00000548068.5:ENST00000549915.5:ENST00000448789.2:ENST00000551459.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	28	2	2.60899	3.3896800000000002	4.17037	0.0232669	0.0139194	0.118148	0.10247
chr12	120720129	120720227	5236492	0	+	0.561224	(0.515,0.57]	chr12	497019	2	UTR3	UTR3:EXON_MRNA	UNC119B	ENSG00000175970.11	ENST00000344651.5	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	2.60899	3.3896800000000002	4.17037	0.0232669	0.0139194	0.118148	0.10247
chr2	65359691	65359791	1143464	0	-	0.55	(0.515,0.57]	chr2	122231	144	INTRON	INTRON	SPRED2	ENSG00000198369.10	ENST00000356388.9:ENST00000443619.6:ENST00000452315.5:ENST00000474228.1:ENST00000440972.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	28	2	2.60899	3.3896800000000002	4.17037	0.0232669	0.0139194	0.118148	0.10247
chr22	24309411	24309510	7487273	0	+	0.525253	(0.515,0.57]	chr22	763996	46	INTRON	INTRON	SPECC1L	ENSG00000100014.20	ENST00000437398.5:ENST00000421374.5:ENST00000314328.14:ENST00000651059.1:ENST00000541492.1:ENST00000416735.5:ENST00000440893.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	28	2	2.60899	3.3896800000000002	4.17037	0.0232669	0.0139194	0.118148	0.10247
chr7	24846980	24847079	3504477	0	-	0.535354	(0.515,0.57]	chr7	327047	42	INTRON	INTRON	OSBPL3	ENSG00000070882.13	ENST00000313367.7:ENST00000409863.5:ENST00000396431.5:ENST00000409452.5:ENST00000409759.5:ENST00000409555.5:ENST00000396429.5:ENST00000409069.5:ENST00000461835.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	28	2	2.60899	3.3896800000000002	4.17037	0.0232669	0.0139194	0.118148	0.10247
chr10	35509627	35509727	4426243	0	+	0.44	(0.408,0.44]	chr10	407931	77	INTRON	INTRON	CCNY	ENSG00000108100.18	ENST00000374706.5:ENST00000490012.6:ENST00000493157.6:ENST00000374704.8:ENST00000265375.13:ENST00000339497.7:ENST00000492478.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	40	2	2.44674	3.38956	4.33238	0.0218901	0.00868283	0.11491	0.0842798
chr19	13149398	13149498	7143140	0	-	0.41	(0.408,0.44]	chr19	721108	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	STX10	ENSG00000104915.15	ENST00000587230.6:ENST00000343587.9:ENST00000591843.1:ENST00000589083.5:ENST00000242770.9:ENST00000587318.5:ENST00000593126.5:ENST00000440593.3:ENST00000588848.5:ENST00000591197.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	40	2	2.44674	3.38956	4.33238	0.0218901	0.00868283	0.11491	0.0842798
chr7	107540327	107540427	3612790	0	-	0.42	(0.408,0.44]	chr7	336704	126	INTRON	INTRON	COG5	ENSG00000164597.15	ENST00000297135.9:ENST00000347053.8:ENST00000393603.7:ENST00000475638.6:ENST00000605888.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	40	2	2.44674	3.38956	4.33238	0.0218901	0.00868283	0.11491	0.0842798
chr3	87835818	87835918	1455443	0	+	0.45	(0.44,0.476]	chr3	153149	133	INTRON	INTRON	HTR1F	ENSG00000179097.7	ENST00000319595.7	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	2.80275	3.3895049999999998	3.97626	0.0300538	0.0146513	0.142135	0.0982604
chr19	46365244	46365343	7081497	0	+	0.494949	(0.476,0.515]	chr19	708528	109	INTRON	INTRON	PPP5C	ENSG00000011485.15	ENST00000012443.9:ENST00000478046.5:ENST00000391919.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	42	2	2.16377	3.38948	4.61519	0.0243026	0.00528365	0.12011	0.0656295
chr19	8453505	8453604	7010849	0	+	0.30303	(0.28,0.32]	chr19	696137	80	INTRON	INTRON	HNRNPM	ENSG00000099783.12	ENST00000348943.7:ENST00000597813.5:ENST00000600092.5:ENST00000325495.9:ENST00000600806.5:ENST00000620401.4:ENST00000594907.5:ENST00000596984.5:ENST00000601645.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	79	2	3.19774	3.38937	3.581	0.00548491	8.63544e-4	0.0648867	0.0266494
chr1	28057393	28057493	408694	0	-	0.29	(0.28,0.32]	chr1	49215	86	INTRON	INTRON	EYA3	ENSG00000158161.16	ENST00000373871.8:ENST00000540618.5:ENST00000436342.6:ENST00000373864.5:ENST00000373863.3:ENST00000471498.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	33	2	2.53522	3.38921	4.2432	0.0479043	0.0310424	0.153019	0.143457
chr1	151890214	151890308	555464	0	-	0.319149	(0.28,0.32]	chr1	65712	1	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	THEM4	ENSG00000159445.13	ENST00000368814.8:ENST00000471464.5:ENST00000483207.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	33	2	2.53522	3.38921	4.2432	0.0479043	0.0310424	0.153019	0.143457
chr1	213141479	213141579	311609	0	+	0.29	(0.28,0.32]	chr1	35945	112	INTRON	INTRON	RPS6KC1	ENSG00000136643.12	ENST00000615329.4:ENST00000543354.5:ENST00000614059.4:ENST00000543470.5:ENST00000366960.8:ENST00000366959.4:ENST00000490299.5:ENST00000468069.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	33	2	2.53522	3.38921	4.2432	0.0479043	0.0310424	0.153019	0.143457
chr11	14890131	14890231	4919885	0	-	0.29	(0.28,0.32]	chr11	461068	3	SS5_PROX	SS5_PROX:INTRON	CYP2R1	ENSG00000186104.11	ENST00000334636.10:ENST00000534686.5:ENST00000530609.5:ENST00000532378.5:ENST00000526489.5:ENST00000526276.5:ENST00000529043.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	33	2	2.53522	3.38921	4.2432	0.0479043	0.0310424	0.153019	0.143457
chr12	96928519	96928618	5198347	0	+	0.282828	(0.28,0.32]	chr12	491729	32	INTRON	INTRON	NEDD1	ENSG00000139350.12	ENST00000429527.6:ENST00000557478.5:ENST00000555806.5:ENST00000411739.6:ENST00000555114.5:ENST00000266742.9:ENST00000557454.1:ENST00000553609.5:ENST00000557644.5:ENST00000457368.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	33	2	2.53522	3.38921	4.2432	0.0479043	0.0310424	0.153019	0.143457
chr2	61365736	61365835	1129493	0	-	0.282828	(0.28,0.32]	chr2	121448	147	INTRON	INTRON	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000453133.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	33	2	2.53522	3.38921	4.2432	0.0479043	0.0310424	0.153019	0.143457
chr3	33669903	33670003	1653520	0	-	0.29	(0.28,0.32]	chr3	169658	60	INTRON	INTRON	CLASP2	ENSG00000163539.18	ENST00000399362.8:ENST00000682230.1:ENST00000468888.6:ENST00000359576.9	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	2.53522	3.38921	4.2432	0.0479043	0.0310424	0.153019	0.143457
chr5	60951927	60952027	2359287	0	+	0.3	(0.28,0.32]	chr5	227644	61	INTRON	INTRON	NDUFAF2	ENSG00000164182.12	ENST00000678452.1:ENST00000677756.1:ENST00000296597.10:ENST00000511107.1:ENST00000677932.1:ENST00000502658.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	33	2	2.53522	3.38921	4.2432	0.0479043	0.0310424	0.153019	0.143457
chr7	27825237	27825337	3294218	0	+	0.29	(0.28,0.32]	chr7	306038	78	INTRON	INTRON	TAX1BP1	ENSG00000106052.14	ENST00000543117.5:ENST00000433216.6:ENST00000265393.10:ENST00000409980.5:ENST00000416801.6:ENST00000396319.7:ENST00000457186.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	33	2	2.53522	3.38921	4.2432	0.0479043	0.0310424	0.153019	0.143457
chr7	124848659	124848759	3632941	0	-	0.29	(0.28,0.32]	chr7	337647	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	POT1	ENSG00000128513.16	ENST00000430927.6:ENST00000357628.8:ENST00000393329.5:ENST00000653274.1:ENST00000661898.1:ENST00000664330.1:ENST00000657892.1:ENST00000662531.1:ENST00000653241.1:ENST00000653892.1:ENST00000664366.1:ENST00000655761.1:ENST00000668382.1:ENST00000654766.1:ENST00000657333.1:ENST00000653819.1:ENST00000609106.5:ENST00000607932.5:ENST00000608057.5:ENST00000446993.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	45	2	2.1895	3.389125	4.58875	0.0230574	0.0227063	0.124921	0.118056
chr1	8492566	8492666	370515	0	-	0.44	(0.408,0.44]	chr1	43466	262	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000377464.5:ENST00000400907.6:ENST00000656437.1:ENST00000464972.5:ENST00000659924.1:ENST00000480342.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	46	2	1.75791	3.3890949999999997	5.02028	0.0378795	0.00303216	0.157034	0.0493883
chr1	167425751	167425850	246936	0	+	0.424242	(0.408,0.44]	chr1	29408	98	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	POU2F1	ENSG00000143190.23	ENST00000367866.7:ENST00000271411.8:ENST00000429375.6:ENST00000367865.5:ENST00000541643.7:ENST00000367862.9:ENST00000443275.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	46	2	1.75791	3.3890949999999997	5.02028	0.0378795	0.00303216	0.157034	0.0493883
chr4	78808170	78808270	1981703	0	+	0.43	(0.408,0.44]	chr4	198463	311	INTRON	INTRON	BMP2K	ENSG00000138756.19	ENST00000389010.7:ENST00000502613.3:ENST00000502871.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	46	2	1.75791	3.3890949999999997	5.02028	0.0378795	0.00303216	0.157034	0.0493883
chr14	103394698	103394797	5825712	0	+	0.242424	[0,0.28]	chr14	552781	5	INTRON	INTRON	MARK3	ENSG00000075413.19	ENST00000678179.1:ENST00000676838.1:ENST00000677348.1:ENST00000677404.1:ENST00000676694.1:ENST00000676938.1:ENST00000678619.1:ENST00000676897.1:ENST00000677214.1:ENST00000677942.1:ENST00000676830.1:ENST00000678999.1:ENST00000677228.1:ENST00000556744.2:ENST00000677104.1:ENST00000679330.1:ENST00000560417.6:ENST00000440884.7:ENST00000676475.1:ENST00000677035.1:ENST00000678022.1:ENST00000677560.1:ENST00000561314.6:ENST00000429436.7:ENST00000677118.1:ENST00000676564.1:ENST00000678169.1:ENST00000678175.1:ENST00000678897.1:ENST00000678278.1:ENST00000676645.1:ENST00000677829.1:ENST00000678302.1:ENST00000677133.1:ENST00000561164.2:ENST00000558223.6:ENST00000559328.6:ENST00000678207.1:ENST00000677360.1:ENST00000676905.1:ENST00000678343.1:ENST00000677347.1:ENST00000678071.1:ENST00000677432.1:ENST00000678237.1:ENST00000677604.1:ENST00000676518.1:ENST00000677051.1:ENST00000677857.1:ENST00000677869.1:ENST00000678423.1:ENST00000560603.6:ENST00000416682.6:ENST00000303622.13:ENST00000216288.11:ENST00000679105.1:ENST00000553942.5:ENST00000335102.9:ENST00000561225.1:ENST00000678091.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	48	2	1.95356	3.3889449999999997	4.82433	0.0463152	0.0200334	0.166231	0.109608
chr3	183853551	183853650	1881287	0	-	0.242424	[0,0.28]	chr3	188011	89	INTRON	INTRON	PARL	ENSG00000175193.14	ENST00000639100.1:ENST00000317096.9:ENST00000638817.1:ENST00000311101.9:ENST00000435888.5:ENST00000639900.1:ENST00000421484.5:ENST00000449306.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	48	2	1.95356	3.3889449999999997	4.82433	0.0463152	0.0200334	0.166231	0.109608
chr5	91376013	91376113	2674915	0	-	0.24	[0,0.28]	chr5	253103	4	SS3_PROX	SS3_PROX:INTRON	ARRDC3	ENSG00000113369.9	ENST00000265138.4:ENST00000514284.5:ENST00000508948.5:ENST00000503192.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	48	2	1.95356	3.3889449999999997	4.82433	0.0463152	0.0200334	0.166231	0.109608
chr21	34842399	34842499	7446805	0	-	0.52	(0.515,0.57]	chr21	759836	74	INTRON	INTRON	RUNX1	ENSG00000159216.19	ENST00000300305.7:ENST00000675419.1:ENST00000437180.5:ENST00000344691.8:ENST00000482318.5:ENST00000399240.5:ENST00000358356.9:ENST00000469087.1:ENST00000399237.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	88	2	2.67294	3.3889250000000004	4.10491	0.00112534	3.09275e-5	0.0306963	0.00443703
chr3	183730147	183730246	1580618	0	+	0.50505	(0.476,0.515]	chr3	163056	9	INTRON	INTRON	YEATS2	ENSG00000163872.16	ENST00000305135.10	protein_coding	protein_coding	protein_coding	protein_coding	3	46	2	1.74317	3.388915	5.03466	0.0396373	0.00252065	0.161534	0.0446195
chr3	15796195	15796295	1623805	0	-	0.28	[0,0.28]	chr3	168021	4	SS5_PROX	SS5_PROX:INTRON	ANKRD28	ENSG00000206560.12	ENST00000399451.6:ENST00000624145.3:ENST00000683139.1:ENST00000412318.5:ENST00000497037.5:ENST00000451422.1:ENST00000498524.5:ENST00000439830.5:ENST00000461696.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	168	2	2.87415	3.388895	3.90364	5.45367e-4	2.89911e-4	0.0215432	0.015129
chr5	177168393	177168493	2554046	0	+	0.33	(0.32,0.35]	chr5	243927	311	INTRON	INTRON	NSD1	ENSG00000165671.22	ENST00000508896.6:ENST00000689549.1:ENST00000354179.9:ENST00000686993.1:ENST00000689326.1:ENST00000439151.7:ENST00000510954.6:ENST00000689345.1:ENST00000347982.9:ENST00000687453.1:ENST00000685206.1:ENST00000638627.3:ENST00000644863.2:ENST00000688613.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	58	2	1.59364	3.3888949999999998	5.18415	0.0413426	0.00333629	0.161557	0.0512081
chr12	9308390	9308486	5073261	0	+	0.46875	(0.44,0.476]	chr12	479695	7	INTRON	INTRON	ENSG00000111788	ENSG00000111788.10	ENST00000539757.1	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	5	136	2	3.13746	3.388865	3.64027	8.94727e-5	4.59928e-5	0.0079464	0.00586921
chr8	94832772	94832871	3800214	0	+	0.575758	(0.57,1]	chr8	352357	2	INTRON	INTRON	INTS8	ENSG00000164941.14	ENST00000523731.6:ENST00000524333.5:ENST00000523321.5:ENST00000343161.8:ENST00000523206.5:ENST00000520526.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	26	2	1.9042	3.3887650000000002	4.87333	0.0476976	3.21412e-4	0.153019	0.0159645
chr1	52524765	52524864	458282	0	-	0.383838	(0.378,0.408]	chr1	55085	84	INTRON	INTRON	TUT4	ENSG00000134744.14	ENST00000371544.7:ENST00000257177.9:ENST00000528642.5:ENST00000484723.6:ENST00000371541.5:ENST00000473856.5:ENST00000355809.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	45	2	2.78867	3.3886700000000003	3.98867	0.0507	0.00226991	0.156383	0.0437013
chr1	66945353	66945451	139645	0	+	0.336735	(0.32,0.35]	chr1	15656	48	INTRON	INTRON	MIER1	ENSG00000198160.15	ENST00000355977.10:ENST00000371018.7:ENST00000357692.6:ENST00000371016.5:ENST00000371014.5:ENST00000371012.6:ENST00000401041.6:ENST00000355356.3:ENST00000401042.7:ENST00000479067.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	103	2	3.16237	3.38862	3.61487	0.00550276	4.27061e-5	0.0648867	0.00529579
chr1	229544246	229544344	653625	0	-	0.540816	(0.515,0.57]	chr1	77476	15	INTRON	INTRON	ABCB10	ENSG00000135776.5	ENST00000344517.5	protein_coding	protein_coding	protein_coding	protein_coding	4	97	2	3.3102	3.3883900000000002	3.46658	1.88344e-4	5.8755e-5	0.012549	0.00629276
chr4	152534540	152534640	2275075	0	-	0.49	(0.476,0.515]	chr4	221129	2	SS5_PROX	SS5_PROX:INTRON	FBXW7	ENSG00000109670.16	ENST00000281708.10:ENST00000603548.6:ENST00000604872.6:ENST00000647166.1:ENST00000643834.1:ENST00000642901.1:ENST00000604095.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	63	2	3.15202	3.38833	3.62464	0.00455841	5.079e-4	0.0595107	0.0202328
chr6	15498256	15498354	2825475	0	+	0.479592	(0.476,0.515]	chr6	265230	7	INTRON	INTRON	JARID2	ENSG00000008083.14	ENST00000341776.7:ENST00000397311.4	protein_coding	protein_coding	protein_coding	protein_coding	2	63	2	3.15202	3.38833	3.62464	0.00455841	5.079e-4	0.0595107	0.0202328
chr1	174161256	174161356	257121	0	+	0.59	(0.57,1]	chr1	30720	12	INTRON	INTRON	RABGAP1L	ENSG00000152061.24	ENST00000357444.10:ENST00000251507.8:ENST00000681986.1:ENST00000635248.1:ENST00000457696.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	26	2	2.33295	3.388305	4.44366	0.0122896	0.00210922	0.091087	0.0425419
chr1	202802089	202802189	620687	0	-	0.4	(0.378,0.408]	chr1	73670	246	INTRON	INTRON	KDM5B	ENSG00000117139.18	ENST00000367265.9:ENST00000648338.1:ENST00000649542.1:ENST00000647757.1:ENST00000367264.7:ENST00000648473.1:ENST00000650569.1:ENST00000648056.1:ENST00000649770.1:ENST00000648469.1:ENST00000650417.1:ENST00000235790.9:ENST00000648738.1:ENST00000648958.1:ENST00000602511.1:ENST00000650368.1:ENST00000649200.1:ENST00000648354.1:ENST00000650493.1:ENST00000470573.5:ENST00000467487.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	29	2	2.45932	3.388155	4.31699	0.0346754	0.0250408	0.148144	0.12011
chr11	940535	940634	4721231	0	+	0.40404	(0.378,0.408]	chr11	436625	66	INTRON	INTRON	AP2A2	ENSG00000183020.15	ENST00000529818.6:ENST00000332231.9:ENST00000448903.7:ENST00000534328.6:ENST00000525796.5:ENST00000529858.6:ENST00000693238.1:ENST00000687890.1:ENST00000687792.1:ENST00000528815.5:ENST00000528195.6:ENST00000531548.6:ENST00000534485.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	29	2	2.45932	3.388155	4.31699	0.0346754	0.0250408	0.148144	0.12011
chr17	67734439	67734539	6667580	0	+	0.39	(0.378,0.408]	chr17	650486	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	NOL11	ENSG00000130935.10	ENST00000253247.9:ENST00000581375.5:ENST00000580833.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	29	2	2.45932	3.388155	4.31699	0.0346754	0.0250408	0.148144	0.12011
chr2	111124239	111124339	849861	0	+	0.38	(0.378,0.408]	chr2	95187	1	SS5_PROX	SS5_PROX:INTRON	BCL2L11	ENSG00000153094.24	ENST00000610735.4:ENST00000615946.4:ENST00000619294.4:ENST00000620862.4:ENST00000621302.4:ENST00000622509.4:ENST00000622612.4:ENST00000393256.8:ENST00000308659.12:ENST00000357757.6:ENST00000337565.9:ENST00000433098.5:ENST00000439718.1:ENST00000431217.1:ENST00000361493.10:ENST00000415458.5:ENST00000436733.5:ENST00000437029.5:ENST00000452231.5:ENST00000405953.5:ENST00000438054.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	29	2	2.45932	3.388155	4.31699	0.0346754	0.0250408	0.148144	0.12011
chr20	46346861	46346959	7346477	0	-	0.387755	(0.378,0.408]	chr20	749032	10	UTR3	UTR3:EXON_MRNA	SLC35C2	ENSG00000080189.15	ENST00000543605.5:ENST00000372230.10	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	2.45932	3.388155	4.31699	0.0346754	0.0250408	0.148144	0.12011
chr22	42911423	42911520	7597310	0	-	0.402062	(0.378,0.408]	chr22	778175	15	INTRON	INTRON	PACSIN2	ENSG00000100266.19	ENST00000337959.8:ENST00000263246.8:ENST00000407585.5:ENST00000403744.7:ENST00000402229.5:ENST00000634914.1:ENST00000453643.5:ENST00000422336.5:ENST00000418133.5:ENST00000445706.5:ENST00000453079.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	29	2	2.45932	3.388155	4.31699	0.0346754	0.0250408	0.148144	0.12011
chr7	136104903	136105003	3431301	0	+	0.39	(0.378,0.408]	chr7	319905	115	INTRON	INTRON	ENSG00000232053	ENSG00000232053.7	ENST00000657456.1:ENST00000668062.1:ENST00000668668.1:ENST00000445293.6:ENST00000659747.1:ENST00000668896.1:ENST00000435996.1	lncRNA	lncRNA	lncRNA	lncRNA	1	29	2	2.45932	3.388155	4.31699	0.0346754	0.0250408	0.148144	0.12011
chr14	21235031	21235131	5834821	0	-	0.33	(0.32,0.35]	chr14	554452	2	SS3_PROX	SS3_PROX:INTRON	HNRNPC	ENSG00000092199.19	ENST00000336053.10:ENST00000553300.6:ENST00000554969.5:ENST00000556142.5:ENST00000554455.5:ENST00000430246.6:ENST00000553753.5:ENST00000555309.5:ENST00000555914.5:ENST00000557442.5:ENST00000556628.5:ENST00000556513.5:ENST00000555883.5:ENST00000557201.5:ENST00000556897.5:ENST00000420743.6:ENST00000554539.5:ENST00000554383.5:ENST00000555215.5:ENST00000555137.5:ENST00000554891.5:ENST00000556226.5:ENST00000555176.5:ENST00000553614.5:ENST00000557336.1:ENST00000557768.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	46	2	1.77704	3.3881300000000003	4.99922	0.0719969	0.00223907	0.187322	0.0435144
chrX	98826063	98826162	7693229	0	+	0.323232	(0.32,0.35]	chrX	787215	406	INTRON	INTRON	ENSG00000281566	ENSG00000281566.3	ENST00000649508.1:ENST00000626665.3:ENST00000627700.2	lncRNA	lncRNA	lncRNA	lncRNA	2	46	2	1.77704	3.3881300000000003	4.99922	0.0719969	0.00223907	0.187322	0.0435144
chr1	32219058	32219157	414779	0	-	0.40404	(0.378,0.408]	chr1	49992	11	INTRON	INTRON	TMEM234	ENSG00000160055.20	ENST00000466796.1:ENST00000489170.5:ENST00000491434.5:ENST00000461402.5:ENST00000483001.5:ENST00000373593.5:ENST00000309777.11:ENST00000344461.7:ENST00000484490.1:ENST00000487174.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	29	2	2.36428	3.387985	4.41169	0.0441088	0.0199606	0.162255	0.109608
chr1	108175456	108175555	517707	0	-	0.393939	(0.378,0.408]	chr1	60726	138	INTRON	INTRON	SLC25A24	ENSG00000085491.17	ENST00000565488.6:ENST00000264128.13:ENST00000370041.4:ENST00000648874.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	29	2	2.36428	3.387985	4.41169	0.0441088	0.0199606	0.162255	0.109608
chr1	148170861	148170961	213608	0	+	0.4	(0.378,0.408]	chr1	23715	64	INTRON	INTRON	LINC02805	ENSG00000232265.8	ENST00000665006.1:ENST00000668803.1:ENST00000656778.1:ENST00000653344.1:ENST00000595367.6:ENST00000597931.6:ENST00000659506.1:ENST00000599864.6:ENST00000663701.1:ENST00000663831.1:ENST00000663602.1:ENST00000618809.1:ENST00000595668.5	lncRNA	lncRNA	lncRNA	lncRNA	1	29	2	2.36428	3.387985	4.41169	0.0441088	0.0199606	0.162255	0.109608
chr15	20494671	20494771	6118829	0	-	0.4	(0.378,0.408]	chr15	582481	108	INTRON	INTRON	HERC2P3	ENSG00000180229.12	ENST00000428453.5:ENST00000437318.5:ENST00000430598.5:ENST00000429257.5:ENST00000414804.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	1	29	2	2.36428	3.387985	4.41169	0.0441088	0.0199606	0.162255	0.109608
chr15	64621726	64621826	6045701	0	+	0.4	(0.378,0.408]	chr15	575696	1188	INTRON	INTRON	ZNF609	ENSG00000180357.10	ENST00000326648.5:ENST00000558680.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	29	2	2.36428	3.387985	4.41169	0.0441088	0.0199606	0.162255	0.109608
chr15	83482862	83482962	6082335	0	+	0.38	(0.378,0.408]	chr15	579031	349	INTRON	INTRON	SH3GL3	ENSG00000140600.17	ENST00000492099.1:ENST00000427482.7:ENST00000563901.5:ENST00000324537.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	29	2	2.36428	3.387985	4.41169	0.0441088	0.0199606	0.162255	0.109608
chr17	75796190	75796290	6676527	0	+	0.39	(0.378,0.408]	chr17	651915	21	INTRON	INTRON	UNK	ENSG00000132478.10	ENST00000589666.6:ENST00000592629.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	29	2	2.36428	3.387985	4.41169	0.0441088	0.0199606	0.162255	0.109608
chr2	175982959	175983059	1273009	0	-	0.39	(0.378,0.408]	chr2	134571	27	INTRON	INTRON	LNPK	ENSG00000144320.14	ENST00000272748.9:ENST00000544803.5:ENST00000409660.5:ENST00000392540.6	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	2.36428	3.387985	4.41169	0.0441088	0.0199606	0.162255	0.109608
chr3	51489434	51489534	1697175	0	-	0.4	(0.378,0.408]	chr3	174424	52	INTRON	INTRON	DCAF1	ENSG00000145041.16	ENST00000504652.5:ENST00000423656.5:ENST00000684031.1	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	2.36428	3.387985	4.41169	0.0441088	0.0199606	0.162255	0.109608
chr5	57259785	57259884	2358927	0	+	0.383838	(0.378,0.408]	chr5	227620	83	INTRON	INTRON	GPBP1	ENSG00000062194.16	ENST00000424459.7:ENST00000514387.6:ENST00000506184.7:ENST00000511209.5:ENST00000264779.6:ENST00000515484.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	29	2	2.36428	3.387985	4.41169	0.0441088	0.0199606	0.162255	0.109608
chr5	142109337	142109437	2505527	0	+	0.38	(0.378,0.408]	chr5	239818	3	SS5_PROX	SS5_PROX:INTRON	NDFIP1	ENSG00000131507.11	ENST00000253814.6:ENST00000509436.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	29	2	2.36428	3.387985	4.41169	0.0441088	0.0199606	0.162255	0.109608
chr6	24652482	24652582	3070424	0	-	0.38	(0.378,0.408]	chr6	285306	1	SS5_PROX	SS5_PROX:INTRON	TDP2	ENSG00000111802.14	ENST00000378198.9:ENST00000341060.3:ENST00000478507.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	29	2	2.36428	3.387985	4.41169	0.0441088	0.0199606	0.162255	0.109608
chr6	35387607	35387706	2852429	0	+	0.393939	(0.378,0.408]	chr6	269491	401	INTRON	INTRON	PPARD	ENSG00000112033.14	ENST00000418635.6:ENST00000448077.6:ENST00000360694.8:ENST00000311565.4:ENST00000337400.6	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	2.36428	3.387985	4.41169	0.0441088	0.0199606	0.162255	0.109608
chr2	61528965	61529065	1131136	0	-	0.51	(0.476,0.515]	chr2	121633	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	XPO1	ENSG00000082898.19	ENST00000676553.1:ENST00000677556.1:ENST00000677814.1:ENST00000676771.1:ENST00000677803.1:ENST00000677239.1:ENST00000678790.1:ENST00000677928.1:ENST00000678182.1:ENST00000677150.1:ENST00000678172.1:ENST00000678360.1:ENST00000678081.1:ENST00000676889.1:ENST00000676783.1:ENST00000679035.1:ENST00000677422.1:ENST00000677417.1:ENST00000677813.1:ENST00000676999.1:ENST00000676667.1:ENST00000678263.1:ENST00000678877.1:ENST00000677933.1:ENST00000680228.1:ENST00000401558.7:ENST00000428210.5:ENST00000677290.1:ENST00000677850.1:ENST00000451765.6:ENST00000676789.1:ENST00000678741.1:ENST00000404992.6:ENST00000406957.5:ENST00000443240.5:ENST00000420673.6:ENST00000481214.1:ENST00000495003.1:ENST00000449444.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	50	2	2.3346	3.38794	4.44128	0.0151924	0.00494807	0.0994339	0.0646039
chr1	186399344	186399444	277790	0	+	0.43	(0.408,0.44]	chr1	32481	3	SS5_PROX	SS5_PROX:INTRON	ODR4	ENSG00000157181.16	ENST00000367470.8:ENST00000287859.11:ENST00000419367.8:ENST00000478571.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	64	2	3.05705	3.387895	3.71874	0.00658331	3.17998e-4	0.0701901	0.0159645
chr16	16062263	16062363	6308897	0	+	0.4	(0.378,0.408]	chr16	603578	48	INTRON	INTRON	ABCC1	ENSG00000103222.20	ENST00000678422.1:ENST00000677164.1:ENST00000399408.7:ENST00000572882.3:ENST00000399410.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	30	2	2.78705	3.38786	3.98867	0.0507	0.0135539	0.156383	0.101363
chr3	47174918	47175017	1418188	0	+	0.383838	(0.378,0.408]	chr3	148976	51	INTRON	INTRON	KIF9-AS1	ENSG00000227398.5	ENST00000670818.1:ENST00000429315.3	lncRNA	lncRNA	lncRNA	lncRNA	1	30	2	2.78705	3.38786	3.98867	0.0507	0.0135539	0.156383	0.101363
chr3	101436866	101436966	1757809	0	-	0.39	(0.378,0.408]	chr3	178323	187	INTRON	INTRON	SENP7	ENSG00000138468.16	ENST00000394095.7:ENST00000314261.11:ENST00000394094.6:ENST00000394091.5:ENST00000348610.3	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	2.78705	3.38786	3.98867	0.0507	0.0135539	0.156383	0.101363
chr6	84755406	84755505	3149886	0	-	0.393939	(0.378,0.408]	chr6	293636	70	INTRON	INTRON	TBX18	ENSG00000112837.17	ENST00000606784.5:ENST00000369663.10:ENST00000606521.1:ENST00000606325.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	30	2	2.78705	3.38786	3.98867	0.0507	0.0135539	0.156383	0.101363
chr1	198643134	198643234	289377	0	+	0.34	(0.32,0.35]	chr1	33235	34	INTRON	INTRON	PTPRC	ENSG00000081237.20	ENST00000367379.6:ENST00000643513.1:ENST00000348564.11:ENST00000530727.5:ENST00000442510.8:ENST00000645247.1:ENST00000462363.6:ENST00000367367.8:ENST00000413409.6:ENST00000367364.5:ENST00000529828.5:ENST00000418674.1:ENST00000427110.6:ENST00000391970.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:non_stop_decay:processed_transcript	1	32	2	2.71269	3.3878399999999997	4.06299	0.0559439	0.0181461	0.165463	0.114853
chr16	48278178	48278277	6346091	0	+	0.333333	(0.32,0.35]	chr16	609103	3	INTRON	INTRON	LONP2	ENSG00000102910.14	ENST00000285737.9:ENST00000535754.5:ENST00000416006.7:ENST00000566755.5:ENST00000570174.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	32	2	2.71269	3.3878399999999997	4.06299	0.0559439	0.0181461	0.165463	0.114853
chr5	39035529	39035629	2605259	0	-	0.35	(0.32,0.35]	chr5	247896	140	INTRON	INTRON	RICTOR	ENSG00000164327.13	ENST00000357387.8:ENST00000511516.5:ENST00000296782.9:ENST00000510711.5:ENST00000513566.1:ENST00000514735.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	32	2	2.71269	3.3878399999999997	4.06299	0.0559439	0.0181461	0.165463	0.114853
chr7	157340057	157340157	3455331	0	+	0.34	(0.32,0.35]	chr7	323050	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	DNAJB6	ENSG00000105993.15	ENST00000441561.5:ENST00000429029.6:ENST00000262177.9:ENST00000486083.6:ENST00000417758.5:ENST00000459889.5:ENST00000443280.5:ENST00000488001.5:ENST00000441291.5:ENST00000437030.5:ENST00000412557.5:ENST00000453383.5:ENST00000439402.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	32	2	2.71269	3.3878399999999997	4.06299	0.0559439	0.0181461	0.165463	0.114853
chrX	13754675	13754770	7623443	0	+	0.421053	(0.408,0.44]	chrX	780500	14	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	OFD1	ENSG00000046651.16	ENST00000380567.6:ENST00000684577.1:ENST00000683427.1:ENST00000683284.1:ENST00000683713.1:ENST00000340096.11:ENST00000682953.1:ENST00000682237.1:ENST00000464463.6:ENST00000683655.1:ENST00000682562.1:ENST00000398395.8:ENST00000380550.6:ENST00000683055.1:ENST00000490265.6:ENST00000683454.1:ENST00000683637.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	46	2	1.69566	3.3877450000000002	5.07983	0.0453922	0.00247652	0.164236	0.0446195
chr9	92258364	92258461	4286971	0	-	0.453608	(0.44,0.476]	chr9	394157	17	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	IARS1	ENSG00000196305.19	ENST00000375643.7:ENST00000443024.7:ENST00000447699.7:ENST00000683537.1:ENST00000684726.1:ENST00000683192.1:ENST00000683565.1:ENST00000682756.1:ENST00000684542.1:ENST00000683793.1:ENST00000683817.1:ENST00000682141.1:ENST00000682893.1:ENST00000684557.1:ENST00000498025.2:ENST00000682156.1:ENST00000627121.3:ENST00000683469.1:ENST00000683495.1:ENST00000682578.1:ENST00000682533.1:ENST00000472894.2:ENST00000684757.1:ENST00000684445.1:ENST00000683376.1:ENST00000683679.1:ENST00000683119.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	290	2	2.91853	3.38774	3.85695	3.31388e-6	1.98228e-6	0.00118585	9.67125e-4
chrX	41120472	41120572	7644412	0	+	0.5	(0.476,0.515]	chrX	782230	340	INTRON	INTRON	USP9X	ENSG00000124486.14	ENST00000324545.9:ENST00000378308.7	protein_coding	protein_coding	protein_coding	protein_coding	3	46	2	1.80284	3.387685	4.97253	0.033161	0.00311573	0.145899	0.0498063
chr12	76077736	76077836	5370156	0	-	0.43	(0.408,0.44]	chr12	512329	31	INTRON	INTRON	NAP1L1	ENSG00000187109.15	ENST00000618691.5:ENST00000393263.7:ENST00000431879.7:ENST00000547773.5:ENST00000544816.5:ENST00000542344.5:ENST00000535020.6:ENST00000549596.5:ENST00000552342.5:ENST00000548044.5:ENST00000550934.5:ENST00000551992.5:ENST00000548273.5:ENST00000551600.5:ENST00000547704.5:ENST00000549988.5:ENST00000547479.5:ENST00000549479.1:ENST00000551500.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	118	2	2.95595	3.3876150000000003	3.81928	3.06208e-4	8.31527e-5	0.0161362	0.00767539
chr11	603167	603264	4719848	0	+	0.536082	(0.515,0.57]	chr11	436210	11	INTRON	INTRON	PHRF1	ENSG00000070047.13	ENST00000264555.10:ENST00000416188.3:ENST00000534320.5:ENST00000413872.6:ENST00000533464.5:ENST00000532550.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	55	2	3.37125	3.387565	3.40388	0.00142538	0.00136343	0.0340865	0.0339121
chr7	140916269	140916369	3663649	0	-	0.38	(0.378,0.408]	chr7	340105	657	INTRON	INTRON	BRAF	ENSG00000157764.14	ENST00000496384.7:ENST00000644969.2:ENST00000646891.1:ENST00000644905.1:ENST00000642228.1:ENST00000288602.11:ENST00000646730.1:ENST00000497784.2:ENST00000642272.1:ENST00000642808.1:ENST00000643790.1:ENST00000469930.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	43	2	2.00398	3.3875149999999996	4.77105	0.0393906	0.00330823	0.143072	0.0527031
chr8	42275790	42275890	3742984	0	+	0.4	(0.378,0.408]	chr8	348064	32	INTRON	INTRON	IKBKB	ENSG00000104365.16	ENST00000520810.6:ENST00000629753.2:ENST00000517890.5:ENST00000520835.7:ENST00000523105.5:ENST00000519735.5:ENST00000519733.5:ENST00000518679.5:ENST00000517917.5:ENST00000342222.6:ENST00000520201.5:ENST00000518647.5:ENST00000517388.5:ENST00000521661.5:ENST00000520655.5:ENST00000517812.5:ENST00000522147.4:ENST00000523517.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	43	2	2.00398	3.3875149999999996	4.77105	0.0393906	0.00330823	0.143072	0.0527031
chr14	100365374	100365474	5968791	0	-	0.52	(0.515,0.57]	chr14	567103	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	WARS1	ENSG00000140105.18	ENST00000392882.7:ENST00000358655.8:ENST00000355338.6:ENST00000344102.9:ENST00000557135.5:ENST00000556645.5:ENST00000553395.5:ENST00000556504.5:ENST00000557722.5:ENST00000557297.5:ENST00000556435.5:ENST00000553808.5:ENST00000554331.5:ENST00000555063.5:ENST00000556338.5:ENST00000557239.5:ENST00000556698.5:ENST00000553524.5:ENST00000555410.5:ENST00000556579.5:ENST00000554772.5:ENST00000556660.5:ENST00000556783.5:ENST00000553413.5:ENST00000557094.5:ENST00000553769.6:ENST00000553545.5:ENST00000554820.5:ENST00000557347.5:ENST00000554509.5:ENST00000556209.5:ENST00000554605.5:ENST00000555813.5:ENST00000556695.5:ENST00000556295.5:ENST00000555031.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	73	2	1.44512	3.3873450000000003	5.32957	0.0193997	4.06834e-4	0.119831	0.0185763
chr11	71915374	71915473	4975872	0	-	0.50505	(0.476,0.515]	chr11	469940	110	INTRON	INTRON	XNDC1N	ENSG00000254469.10	ENST00000679695.1:ENST00000532852.5:ENST00000679412.2:ENST00000528511.6:ENST00000528560.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	86	2	2.76855	3.3872549999999997	4.00596	0.00244302	1.1409e-4	0.0456956	0.00960783
chr10	125098092	125098192	4713711	0	-	0.42	(0.408,0.44]	chr10	434903	94	INTRON	INTRON	CTBP2	ENSG00000175029.17	ENST00000337195.9:ENST00000411419.6:ENST00000494626.6:ENST00000531469.5:ENST00000460976.5:ENST00000476817.1:ENST00000530884.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	194	2	2.97622	3.3872299999999997	3.79824	7.35724e-5	3.11005e-6	0.00714826	0.00125281
chr8	29061285	29061385	3726586	0	+	0.6	(0.57,1]	chr8	346339	40	INTRON	INTRON	HMBOX1	ENSG00000147421.18	ENST00000522468.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	18	234	2	3.25351	3.387225	3.52094	2.52553e-8	8.21689e-9	6.02033e-5	2.42246e-5
chr1	24834980	24835079	46963	0	+	0.40404	(0.378,0.408]	chr1	5788	75	INTRON	INTRON	CLIC4	ENSG00000169504.15	ENST00000488683.1:ENST00000497755.1:ENST00000374379.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	39	2	2.11103	3.387205	4.66338	0.0266911	0.0103469	0.134419	0.0850389
chr1	110364783	110364883	182599	0	+	0.4	(0.378,0.408]	chr1	20257	84	INTRON	INTRON	LAMTOR5-AS1	ENSG00000224699.10	ENST00000626572.2	lncRNA	lncRNA	lncRNA	lncRNA	2	39	2	2.11103	3.387205	4.66338	0.0266911	0.0103469	0.134419	0.0850389
chr12	122132706	122132798	5240411	0	+	0.402174	(0.378,0.408]	chr12	497529	3	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	MLXIP	ENSG00000175727.14	ENST00000319080.12:ENST00000539861.5:ENST00000538061.1:ENST00000538698.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	39	2	2.11103	3.387205	4.66338	0.0266911	0.0103469	0.134419	0.0850389
chr12	93574247	93574342	5189799	0	+	0.347368	(0.32,0.35]	chr12	490884	12	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	SOCS2	ENSG00000120833.14	ENST00000340600.6:ENST00000549206.5:ENST00000536696.6:ENST00000548091.5:ENST00000549122.5:ENST00000622746.4:ENST00000548537.1:ENST00000549887.1:ENST00000551556.2	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	2.30673	3.387155	4.46758	0.0584434	0.0119306	0.167723	0.0962115
chr14	36952197	36952297	5875809	0	-	0.33	(0.32,0.35]	chr14	558013	768	INTRON	INTRON	SLC25A21	ENSG00000183032.12	ENST00000331299.6:ENST00000555449.5:ENST00000557611.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	34	2	2.30673	3.387155	4.46758	0.0584434	0.0119306	0.167723	0.0962115
chr14	55277228	55277327	5725852	0	+	0.323232	(0.32,0.35]	chr14	543446	46	INTRON	INTRON	FBXO34	ENSG00000178974.11	ENST00000681400.1:ENST00000681904.1:ENST00000679934.1:ENST00000681074.1:ENST00000680682.1:ENST00000680658.1:ENST00000313833.5:ENST00000554940.1:ENST00000440021.1:ENST00000555087.1:ENST00000557647.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	34	2	2.30673	3.387155	4.46758	0.0584434	0.0119306	0.167723	0.0962115
chr15	34208994	34209089	6131386	0	-	0.347368	(0.32,0.35]	chr15	583952	6	EXON_LNCRNA	EXON_LNCRNA:INTRON	KATNBL1	ENSG00000134152.11	ENST00000256544.8:ENST00000560247.5:ENST00000540594.5:ENST00000560671.5:ENST00000557877.5:ENST00000559462.1:ENST00000560108.5:ENST00000559515.1:ENST00000560915.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	34	2	2.30673	3.387155	4.46758	0.0584434	0.0119306	0.167723	0.0962115
chr17	30840881	30840981	6590515	0	+	0.34	(0.32,0.35]	chr17	640935	1	SS5_PROX	SS5_PROX:INTRON	ATAD5	ENSG00000176208.9	ENST00000321990.5:ENST00000578295.5:ENST00000585133.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:non_stop_decay	1	34	2	2.30673	3.387155	4.46758	0.0584434	0.0119306	0.167723	0.0962115
chr3	119890273	119890372	1793374	0	-	0.343434	(0.32,0.35]	chr3	180150	55	INTRON	INTRON	GSK3B	ENSG00000082701.17	ENST00000264235.13:ENST00000316626.6:ENST00000678439.1:ENST00000678013.1:ENST00000677502.1:ENST00000676566.1:ENST00000650344.2:ENST00000679206.1:ENST00000677716.1:ENST00000679194.1:ENST00000677362.1:ENST00000678181.1:ENST00000678561.1:ENST00000676887.1:ENST00000676948.1:ENST00000677046.1:ENST00000678787.1:ENST00000679066.1:ENST00000679188.1:ENST00000678377.1:ENST00000677995.1:ENST00000677069.1:ENST00000677483.1:ENST00000678509.1:ENST00000677648.1:ENST00000677788.1:ENST00000678754.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	34	2	2.30673	3.387155	4.46758	0.0584434	0.0119306	0.167723	0.0962115
chr1	1711381	1711476	361073	0	-	0.557895	(0.515,0.57]	chr1	42070	14	INTRON	INTRON	CDK11A:ENSG00000268575	ENSG00000008128.23:ENSG00000268575.1	ENST00000404249.8:ENST00000356200.7:ENST00000598846.1:ENST00000357760.6:ENST00000358779.9:ENST00000378633.5:ENST00000460465.5:ENST00000509982.5:ENST00000378638.6:ENST00000356937.7	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA	1	26	2	2.46104	3.38715	4.31326	0.032841	0.0141817	0.145164	0.0959618
chr1	40205708	40205808	80412	0	+	0.55	(0.515,0.57]	chr1	10431	27	INTRON	INTRON	RLF	ENSG00000117000.9	ENST00000372771.5	protein_coding	protein_coding	protein_coding	protein_coding	1	26	2	2.46104	3.38715	4.31326	0.032841	0.0141817	0.145164	0.0959618
chr1	93218752	93218852	163570	0	+	0.55	(0.515,0.57]	chr1	17740	1	SS5_PROX	SS5_PROX:INTRON	CCDC18	ENSG00000122483.18	ENST00000343253.11:ENST00000401026.7:ENST00000690592.1:ENST00000370276.6:ENST00000690025.1:ENST00000692873.1:ENST00000455267.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	26	2	2.46104	3.38715	4.31326	0.032841	0.0141817	0.145164	0.0959618
chr12	62293578	62293678	5149881	0	+	0.53	(0.515,0.57]	chr12	487287	145	INTRON	INTRON	USP15	ENSG00000135655.16	ENST00000353364.7:ENST00000549523.5:ENST00000550632.5:ENST00000312635.10:ENST00000548524.5:ENST00000280377.10:ENST00000551206.5:ENST00000546718.5:ENST00000537297.2:ENST00000549237.5:ENST00000548836.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	26	2	2.46104	3.38715	4.31326	0.032841	0.0141817	0.145164	0.0959618
chr14	103439998	103440095	5826180	0	+	0.546392	(0.515,0.57]	chr14	552832	13	INTRON	INTRON	MARK3	ENSG00000075413.19	ENST00000678179.1:ENST00000676838.1:ENST00000677348.1:ENST00000677404.1:ENST00000676694.1:ENST00000676938.1:ENST00000678619.1:ENST00000676897.1:ENST00000677214.1:ENST00000677942.1:ENST00000676830.1:ENST00000678999.1:ENST00000677228.1:ENST00000556744.2:ENST00000677104.1:ENST00000679330.1:ENST00000560417.6:ENST00000440884.7:ENST00000676475.1:ENST00000677035.1:ENST00000678022.1:ENST00000677560.1:ENST00000561314.6:ENST00000429436.7:ENST00000677118.1:ENST00000676564.1:ENST00000678169.1:ENST00000678175.1:ENST00000678897.1:ENST00000678278.1:ENST00000676645.1:ENST00000677829.1:ENST00000678302.1:ENST00000677133.1:ENST00000561164.2:ENST00000558223.6:ENST00000559328.6:ENST00000678207.1:ENST00000677360.1:ENST00000676905.1:ENST00000678343.1:ENST00000677347.1:ENST00000678071.1:ENST00000677432.1:ENST00000678237.1:ENST00000677604.1:ENST00000676518.1:ENST00000677051.1:ENST00000677857.1:ENST00000677869.1:ENST00000678423.1:ENST00000560603.6:ENST00000416682.6:ENST00000303622.13:ENST00000216288.11:ENST00000679105.1:ENST00000553942.5:ENST00000335102.9:ENST00000561225.1:ENST00000678091.1:ENST00000561071.5:ENST00000558698.5:ENST00000559268.5:ENST00000560731.5:ENST00000676745.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	26	2	2.46104	3.38715	4.31326	0.032841	0.0141817	0.145164	0.0959618
chr17	42481059	42481154	6611521	0	+	0.515789	(0.515,0.57]	chr17	644111	2	SS5_PROX	SS5_PROX:INTRON	ATP6V0A1	ENSG00000033627.17	ENST00000393829.6:ENST00000343619.9:ENST00000537728.5:ENST00000264649.10:ENST00000585525.5:ENST00000544137.5:ENST00000589727.5:ENST00000587882.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	26	2	2.46104	3.38715	4.31326	0.032841	0.0141817	0.145164	0.0959618
chr17	59893868	59893924	6643769	0	+	0.535714	(0.515,0.57]	chr17	648795	2	UTR3	UTR3:UTR5:EXON_MRNA:INTRON	RPS6KB1	ENSG00000108443.14	ENST00000393021.7:ENST00000472940.5:ENST00000225577.9:ENST00000477179.5:ENST00000443572.6:ENST00000489824.1:ENST00000406116.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	26	2	2.46104	3.38715	4.31326	0.032841	0.0141817	0.145164	0.0959618
chr18	178100	178200	6855023	0	+	0.52	(0.515,0.57]	chr18	679508	109	INTRON	INTRON	USP14	ENSG00000101557.15	ENST00000582707.5:ENST00000400266.7:ENST00000261601.8:ENST00000578942.5:ENST00000383589.6:ENST00000583119.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	26	2	2.46104	3.38715	4.31326	0.032841	0.0141817	0.145164	0.0959618
chr19	2148055	2148155	7115517	0	-	0.57	(0.515,0.57]	chr19	715270	90	INTRON	INTRON	AP3D1	ENSG00000065000.19	ENST00000643116.3:ENST00000345016.9:ENST00000643010.1:ENST00000591284.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	26	2	2.46104	3.38715	4.31326	0.032841	0.0141817	0.145164	0.0959618
chr19	33804888	33804986	7050687	0	+	0.520408	(0.515,0.57]	chr19	703165	32	INTRON	INTRON	KCTD15	ENSG00000153885.15	ENST00000587658.5:ENST00000587559.5:ENST00000588637.5:ENST00000284006.10:ENST00000589786.5:ENST00000683859.1:ENST00000588881.5:ENST00000430256.3	protein_coding	protein_coding	protein_coding	protein_coding	1	26	2	2.46104	3.38715	4.31326	0.032841	0.0141817	0.145164	0.0959618
chr2	27048928	27049028	716666	0	+	0.54	(0.515,0.57]	chr2	82815	60	INTRON	INTRON	AGBL5	ENSG00000084693.16	ENST00000421915.5	protein_coding	protein_coding	protein_coding	protein_coding	1	26	2	2.46104	3.38715	4.31326	0.032841	0.0141817	0.145164	0.0959618
chr5	54011810	54011910	2617922	0	-	0.52	(0.515,0.57]	chr5	248835	998	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	26	2	2.46104	3.38715	4.31326	0.032841	0.0141817	0.145164	0.0959618
chr5	160398202	160398295	2759854	0	-	0.548387	(0.515,0.57]	chr5	260461	3	INTRON	INTRON	ZBED8	ENSG00000221886.4	ENST00000408953.4:ENST00000523213.1	protein_coding	protein_coding	protein_coding	protein_coding	1	26	2	2.46104	3.38715	4.31326	0.032841	0.0141817	0.145164	0.0959618
chr7	102406252	102406349	3371508	0	+	0.515464	(0.515,0.57]	chr7	315472	12	INTRON	INTRON	PRKRIP1	ENSG00000128563.13	ENST00000469763.5:ENST00000482549.5:ENST00000496391.5:ENST00000482465.5:ENST00000462601.5:ENST00000397912.3:ENST00000468316.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	26	2	2.46104	3.38715	4.31326	0.032841	0.0141817	0.145164	0.0959618
chr8	73953461	73953560	3972410	0	-	0.535354	(0.515,0.57]	chr8	364268	63	INTRON	INTRON	ELOC	ENSG00000154582.18	ENST00000602840.5:ENST00000518127.5:ENST00000520242.6:ENST00000687224.1:ENST00000622804.2:ENST00000688584.1:ENST00000692141.1:ENST00000685938.1:ENST00000520210.1:ENST00000284811.12:ENST00000519487.6:ENST00000685250.1:ENST00000522337.5:ENST00000523815.5:ENST00000519082.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	26	2	2.46104	3.38715	4.31326	0.032841	0.0141817	0.145164	0.0959618
chr9	136460123	136460223	4374798	0	-	0.52	(0.515,0.57]	chr9	403033	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	SEC16A	ENSG00000148396.19	ENST00000290037.10:ENST00000313050.11:ENST00000371706.8:ENST00000453963.5:ENST00000277537.10:ENST00000684901.1:ENST00000690691.1:ENST00000431893.3	protein_coding	protein_coding	protein_coding	protein_coding	1	26	2	2.46104	3.38715	4.31326	0.032841	0.0141817	0.145164	0.0959618
chrX	44895186	44895286	7648822	0	+	0.53	(0.515,0.57]	chrX	782726	208	INTRON	INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000675440.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000621147.5:ENST00000475233.1:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	26	2	2.46104	3.38715	4.31326	0.032841	0.0141817	0.145164	0.0959618
chrX	149967415	149967515	7730565	0	+	0.53	(0.515,0.57]	chrX	791141	43	INTRON	INTRON	EOLA2-DT	ENSG00000235703.7	ENST00000670799.1:ENST00000654890.1:ENST00000449111.5:ENST00000444489.5:ENST00000669126.1:ENST00000452864.2:ENST00000671125.1	lncRNA	lncRNA	lncRNA	lncRNA	1	26	2	2.46104	3.38715	4.31326	0.032841	0.0141817	0.145164	0.0959618
chr10	50464299	50464398	4619092	0	-	0.434343	(0.408,0.44]	chr10	425440	31	INTRON	INTRON	SGMS1	ENSG00000198964.14	ENST00000429490.5:ENST00000361781.7:ENST00000619438.4:ENST00000609445.5:ENST00000498514.5:ENST00000608287.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	31	2	2.43988	3.38694	4.334	0.0398236	0.011982	0.143072	0.0962115
chr10	86496500	86496600	4659110	0	-	0.42	(0.408,0.44]	chr10	429282	222	INTRON	INTRON	WAPL	ENSG00000062650.20	ENST00000298767.10	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	2.43988	3.38694	4.334	0.0398236	0.011982	0.143072	0.0962115
chr2	9411967	9412067	1063660	0	-	0.43	(0.408,0.44]	chr2	113405	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ITGB1BP1	ENSG00000119185.13	ENST00000355346.9:ENST00000360635.7:ENST00000238091.8:ENST00000483795.5:ENST00000490426.5:ENST00000497031.5:ENST00000464228.5:ENST00000359712.7:ENST00000465527.5:ENST00000488451.5:ENST00000456913.6:ENST00000482798.5:ENST00000492079.5:ENST00000463190.1:ENST00000494563.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	31	2	2.43988	3.38694	4.334	0.0398236	0.011982	0.143072	0.0962115
chr22	38499799	38499899	7588027	0	-	0.41	(0.408,0.44]	chr22	776764	3	SS3_PROX	SS3_PROX:INTRON	DDX17	ENSG00000100201.23	ENST00000403230.3:ENST00000396821.8:ENST00000216019.11:ENST00000432525.5:ENST00000467279.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	31	2	2.43988	3.38694	4.334	0.0398236	0.011982	0.143072	0.0962115
chr6	140895102	140895202	3241100	0	-	0.41	(0.408,0.44]	chr6	301060	289	INTRON	INTRON	ENSG00000234147	ENSG00000234147.3	ENST00000650553.2:ENST00000692940.1:ENST00000683641.1:ENST00000682196.1:ENST00000684320.1:ENST00000683889.1:ENST00000683062.1:ENST00000682608.1:ENST00000455011.2:ENST00000682812.1:ENST00000683340.1:ENST00000683841.1:ENST00000683589.1:ENST00000684268.1:ENST00000683480.1	lncRNA	lncRNA	lncRNA	lncRNA	1	31	2	2.43988	3.38694	4.334	0.0398236	0.011982	0.143072	0.0962115
chr7	6046246	6046341	3476112	0	-	0.410526	(0.408,0.44]	chr7	325214	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	EIF2AK1	ENSG00000086232.13	ENST00000199389.11:ENST00000495565.5:ENST00000474029.5:ENST00000470168.1:ENST00000431744.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	31	2	2.43988	3.38694	4.334	0.0398236	0.011982	0.143072	0.0962115
chr12	123191589	123191689	5443635	0	-	0.4	(0.378,0.408]	chr12	520806	100	INTRON	INTRON	MPHOSPH9	ENSG00000051825.15	ENST00000606320.6:ENST00000541076.6:ENST00000545556.6:ENST00000302373.8:ENST00000539024.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	39	2	1.89621	3.386915	4.87762	0.0488044	0.00553849	0.173377	0.0648867
chr15	76310264	76310364	6228343	0	-	0.4	(0.378,0.408]	chr15	594972	2	SS3_PROX	SS3_PROX:INTRON	ETFA	ENSG00000140374.17	ENST00000690610.1:ENST00000557943.6:ENST00000692691.1:ENST00000688389.1:ENST00000687293.1:ENST00000691695.1:ENST00000685863.1:ENST00000689730.1:ENST00000687975.1:ENST00000693064.1:ENST00000688908.1:ENST00000691021.1:ENST00000433983.6:ENST00000267950.12:ENST00000685548.1:ENST00000565910.6:ENST00000688154.1:ENST00000560595.6:ENST00000560726.5:ENST00000559602.5:ENST00000560044.6:ENST00000559386.2:ENST00000560899.5:ENST00000685118.1:ENST00000688637.1:ENST00000559075.5:ENST00000689739.1:ENST00000560309.5:ENST00000561092.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	39	2	1.89621	3.386915	4.87762	0.0488044	0.00553849	0.173377	0.0648867
chr17	35081047	35081147	6757882	0	-	0.39	(0.378,0.408]	chr17	664148	110	INTRON	INTRON	RFFL	ENSG00000092871.17	ENST00000315249.11:ENST00000584655.5:ENST00000447669.6:ENST00000584541.1:ENST00000414419.6:ENST00000581265.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	39	2	1.89621	3.386915	4.87762	0.0488044	0.00553849	0.173377	0.0648867
chr2	119823177	119823277	856631	0	+	0.39	(0.378,0.408]	chr2	96184	128	INTRON	INTRON	PTPN4	ENSG00000088179.9	ENST00000263708.7:ENST00000420482.5:ENST00000460289.5:ENST00000488279.6:ENST00000485247.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	39	2	1.89621	3.386915	4.87762	0.0488044	0.00553849	0.173377	0.0648867
chr3	195685314	195685412	1593717	0	+	0.397959	(0.378,0.408]	chr3	165079	20	EXON_LNCRNA	EXON_LNCRNA:SS3_PROX:INTRON	MUC20-OT1	ENSG00000242086.8	ENST00000429897.5:ENST00000445430.5:ENST00000600527.5:ENST00000626089.2:ENST00000451982.6:ENST00000601648.5:ENST00000414625.6:ENST00000628917.2:ENST00000625358.2:ENST00000602127.5:ENST00000625882.2:ENST00000625632.2:ENST00000626706.1:ENST00000627767.1:ENST00000627502.2:ENST00000597034.5:ENST00000629823.2:ENST00000630243.2:ENST00000608699.3:ENST00000627718.2	lncRNA	lncRNA	lncRNA	lncRNA	2	39	2	1.89621	3.386915	4.87762	0.0488044	0.00553849	0.173377	0.0648867
chr1	179221544	179221644	592998	0	-	0.48	(0.476,0.515]	chr1	71074	786	INTRON	INTRON	ABL2	ENSG00000143322.21	ENST00000502732.6:ENST00000367623.8:ENST00000507173.5:ENST00000511413.5:ENST00000668691.1:ENST00000392043.4:ENST00000660584.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	34	2	2.9435	3.38684	3.83018	0.0423385	0.00929849	0.161744	0.0817766
chr6	34675954	34676054	3086012	0	-	0.34	(0.32,0.35]	chr6	288696	41	INTRON	INTRON	ILRUN	ENSG00000196821.10	ENST00000374026.7:ENST00000374023.8	protein_coding	protein_coding	protein_coding	protein_coding	2	42	2	2.07985	3.386825	4.6938	0.0303092	0.0137794	0.143025	0.0949306
chr17	77493770	77493867	6681604	0	+	0.474227	(0.44,0.476]	chr17	652613	3	INTRON	INTRON	SEPTIN9	ENSG00000184640.20	ENST00000591198.5:ENST00000427177.6:ENST00000431235.6:ENST00000449803.6:ENST00000329047.13:ENST00000588690.6:ENST00000423034.6:ENST00000427674.6:ENST00000585930.5:ENST00000541152.6:ENST00000591088.5:ENST00000592481.6:ENST00000592951.5:ENST00000427180.5:ENST00000586456.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	84	2	3.08877	3.38675	3.68473	5.52878e-4	5.47507e-4	0.0215463	0.021371
chr8	56213383	56213478	3755715	0	+	0.547368	(0.515,0.57]	chr8	349333	6	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	CHCHD7	ENSG00000170791.18	ENST00000521831.5:ENST00000303759.3:ENST00000355315.8:ENST00000522166.1:ENST00000521982.5:ENST00000523667.5:ENST00000523532.5:ENST00000517933.5:ENST00000517636.5:ENST00000522366.5:ENST00000523975.5:ENST00000518801.5:ENST00000396723.9:ENST00000523061.5:ENST00000521524.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	38	2	2.27238	3.3867	4.50102	0.0161808	0.00510768	0.101453	0.0646039
chr20	62919375	62919474	7362383	0	-	0.525253	(0.515,0.57]	chr20	751210	46	INTRON	INTRON	DIDO1	ENSG00000101191.17	ENST00000266070.8:ENST00000395343.6:ENST00000395340.5:ENST00000370371.8:ENST00000370368.5:ENST00000354665.8	protein_coding	protein_coding	protein_coding	protein_coding	5	58	2	1.64356	3.38665	5.12974	0.024299	4.54392e-4	0.12011	0.0192381
chr10	110122592	110122692	4519556	0	+	0.42	(0.408,0.44]	chr10	416836	3	SS5_PROX	SS5_PROX:INTRON	ADD3	ENSG00000148700.15	ENST00000360162.7:ENST00000277900.12:ENST00000356080.9:ENST00000486014.1:ENST00000488837.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	228	2	3.27168	3.38661	3.50154	1.91686e-5	1.83336e-6	0.00355096	8.22338e-4
chr7	64692060	64692160	3320145	0	+	0.34	(0.32,0.35]	chr7	308688	1	SS5_PROX	SS5_PROX:INTRON	ZNF107	ENSG00000196247.13	ENST00000395391.2:ENST00000684016.1:ENST00000620827.6:ENST00000423627.6:ENST00000613690.5:ENST00000344930.7:ENST00000682671.1:ENST00000683971.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	73	2	3.31533	3.386525	3.45772	0.00323121	0.00128487	0.0507087	0.0333518
chr13	37005153	37005251	5468916	0	+	0.346939	(0.32,0.35]	chr13	523997	7	EXON_MRNA	EXON_MRNA:INTRON	EXOSC8	ENSG00000120699.14	ENST00000489088.5:ENST00000470423.2:ENST00000684866.1:ENST00000686701.1:ENST00000488108.6:ENST00000689744.1:ENST00000692143.1:ENST00000464235.6:ENST00000239893.9:ENST00000693100.1:ENST00000685624.1:ENST00000389704.4:ENST00000686729.1:ENST00000692477.1:ENST00000474661.5:ENST00000686472.1:ENST00000490537.6:ENST00000690774.1:ENST00000688436.1:ENST00000692787.1:ENST00000685563.1:ENST00000693733.1:ENST00000687482.1:ENST00000685643.1:ENST00000690673.1:ENST00000488779.6:ENST00000689948.1:ENST00000688064.1:ENST00000692761.1:ENST00000687944.1:ENST00000692588.1:ENST00000691611.1:ENST00000692636.1:ENST00000495092.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	42	2	1.81328	3.386495	4.95971	0.0615716	0.00663522	0.193423	0.0703181
chr15	64494497	64494597	6044427	0	+	0.34	(0.32,0.35]	chr15	575688	333	INTRON	INTRON	ZNF609	ENSG00000180357.10	ENST00000326648.5:ENST00000416172.1	protein_coding	protein_coding	protein_coding	protein_coding	2	42	2	1.81328	3.386495	4.95971	0.0615716	0.00663522	0.193423	0.0703181
chr15	72226491	72226590	6219275	0	-	0.323232	(0.32,0.35]	chr15	593585	41	INTRON	INTRON	PKM	ENSG00000067225.20	ENST00000319622.10:ENST00000389093.7:ENST00000335181.10:ENST00000565184.6:ENST00000567118.5:ENST00000565154.6:ENST00000568459.5:ENST00000561609.5:ENST00000569857.5:ENST00000567087.5:ENST00000564276.1:ENST00000566809.1:ENST00000569050.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	42	2	1.81328	3.386495	4.95971	0.0615716	0.00663522	0.193423	0.0703181
chr4	25366115	25366211	1933909	0	+	0.333333	(0.32,0.35]	chr4	194170	1	INTRON	INTRON	ZCCHC4	ENSG00000168228.16	ENST00000302874.9:ENST00000505412.1	protein_coding	protein_coding	protein_coding	protein_coding	2	42	2	1.81328	3.386495	4.95971	0.0615716	0.00663522	0.193423	0.0703181
chr1	24661496	24661596	45934	0	+	0.29	(0.28,0.32]	chr1	5725	1	SS5_PROX	SS5_PROX:INTRON	SRRM1	ENSG00000133226.18	ENST00000374389.8:ENST00000323848.14:ENST00000479034.5:ENST00000596378.1:ENST00000496882.5:ENST00000461768.5:ENST00000485541.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	34	2	2.73945	3.38645	4.03345	0.0704058	0.017681	0.184298	0.11319
chr1	42246440	42246540	431543	0	-	0.31	(0.28,0.32]	chr1	52311	181	INTRON	INTRON	FOXJ3	ENSG00000198815.9	ENST00000372573.5:ENST00000372572.5:ENST00000361776.5:ENST00000545068.5:ENST00000361346.6:ENST00000445886.5	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	2.73945	3.38645	4.03345	0.0704058	0.017681	0.184298	0.11319
chr10	38102208	38102308	4427531	0	+	0.3	(0.28,0.32]	chr10	408039	52	INTRON	INTRON	ZNF37A	ENSG00000075407.19	ENST00000638053.1:ENST00000351773.7:ENST00000685332.1:ENST00000361085.9:ENST00000479469.5:ENST00000477790.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	34	2	2.73945	3.38645	4.03345	0.0704058	0.017681	0.184298	0.11319
chr12	94360708	94360807	5389103	0	-	0.313131	(0.28,0.32]	chr12	513815	247	INTRON	INTRON	CEP83	ENSG00000173588.16	ENST00000397809.10:ENST00000339839.9:ENST00000547232.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	34	2	2.73945	3.38645	4.03345	0.0704058	0.017681	0.184298	0.11319
chr5	159205322	159205419	2759147	0	-	0.309278	(0.28,0.32]	chr5	260370	13	INTRON	INTRON	RNF145	ENSG00000145860.12	ENST00000424310.7:ENST00000519865.5:ENST00000274542.6:ENST00000611185.4:ENST00000521606.6:ENST00000518802.5:ENST00000520638.1:ENST00000520548.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	34	2	2.73945	3.38645	4.03345	0.0704058	0.017681	0.184298	0.11319
chr1	30976094	30976193	411989	0	-	0.333333	(0.32,0.35]	chr1	49687	9	INTRON	INTRON	PUM1	ENSG00000134644.16	ENST00000426105.7:ENST00000373747.7:ENST00000257075.9:ENST00000424085.6:ENST00000525843.5:ENST00000440538.6:ENST00000498419.5:ENST00000373741.8:ENST00000373742.6:ENST00000490546.1:ENST00000532678.1:ENST00000526128.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	44	2	2.4053	3.386425	4.36755	0.0300552	0.0108284	0.129138	0.0920575
chr16	89542084	89542181	6420699	0	+	0.618557	(0.57,1]	chr16	616266	10	UTR3	UTR3:EXON_MRNA:INTRON	SPG7	ENSG00000197912.16	ENST00000647079.1:ENST00000646303.1:ENST00000643649.1:ENST00000644498.1:ENST00000645897.1:ENST00000643668.1:ENST00000644225.1:ENST00000645818.2:ENST00000645977.1:ENST00000645063.1:ENST00000646263.1:ENST00000643724.1:ENST00000644781.1:ENST00000644901.1:ENST00000645042.1:ENST00000646531.1:ENST00000646930.1:ENST00000644210.1:ENST00000646589.1:ENST00000268704.7:ENST00000646826.1:ENST00000646716.1:ENST00000643345.1:ENST00000646958.1:ENST00000643105.1:ENST00000645354.1:ENST00000642334.1:ENST00000647227.1:ENST00000646445.1:ENST00000643954.1:ENST00000646399.1:ENST00000644671.1:ENST00000644748.1:ENST00000643496.1:ENST00000647032.1:ENST00000644751.1:ENST00000642427.1:ENST00000643370.1:ENST00000645886.1:ENST00000646454.1:ENST00000561945.2:ENST00000644171.1:ENST00000566682.2:ENST00000645258.1:ENST00000644044.1:ENST00000642263.1:ENST00000644556.1:ENST00000645842.1:ENST00000643734.1:ENST00000642814.1:ENST00000644061.1:ENST00000643350.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	60	2	3.28944	3.386405	3.48337	6.20854e-4	1.84953e-5	0.0223951	0.00349761
chr20	63913388	63913487	7301142	0	+	0.494949	(0.476,0.515]	chr20	743137	44	INTRON	INTRON	DNAJC5	ENSG00000101152.11	ENST00000360864.9:ENST00000470551.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	84	2	2.96824	3.3863950000000003	3.80455	9.98194e-4	3.04782e-4	0.0290732	0.0161236
chr6	107898031	107898131	3182228	0	-	0.47	(0.44,0.476]	chr6	296393	3	SS3_PROX	SS3_PROX:INTRON	SEC63	ENSG00000025796.14	ENST00000369002.9:ENST00000466419.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	46	2	1.62896	3.38637	5.14378	0.0546679	0.00184943	0.182674	0.0388609
chr3	87854710	87854810	1455632	0	+	0.33	(0.32,0.35]	chr3	153149	322	INTRON	INTRON	HTR1F	ENSG00000179097.7	ENST00000319595.7	protein_coding	protein_coding	protein_coding	protein_coding	4	64	2	1.38564	3.38624	5.38684	0.0793006	5.01164e-4	0.199711	0.020217099999999998
chr15	27380689	27380789	5986259	0	+	0.45	(0.44,0.476]	chr15	569192	304	INTRON	INTRON	GABRG3	ENSG00000182256.13	ENST00000615808.5:ENST00000555083.5:ENST00000554696.5:ENST00000333743.10	protein_coding	protein_coding	protein_coding	protein_coding	2	43	2	2.24189	3.386115	4.53034	0.0193405	0.00672609	0.108861	0.0738715
chr1	16329204	16329304	382387	0	-	0.44	(0.408,0.44]	chr1	44888	134	INTRON	INTRON	FBXO42	ENSG00000037637.11	ENST00000375592.8	protein_coding	protein_coding	protein_coding	protein_coding	4	53	2	1.7519	3.38609	5.02028	0.0239555	0.00303216	0.129259	0.0493883
chr20	62304977	62305077	7298829	0	+	0.62	(0.57,1]	chr20	742520	4	SS5_PROX	SS5_PROX:INTRON	ADRM1	ENSG00000130706.13	ENST00000491935.5:ENST00000620230.4:ENST00000253003.7:ENST00000462554.2:ENST00000465805.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	25	2	2.28103	3.38605	4.49107	0.0151554	0.00220544	0.108535	0.0417893
chr21	42861001	42861098	7467722	0	-	0.608247	(0.57,1]	chr21	760961	9	INTRON	INTRON	WDR4	ENSG00000160193.12	ENST00000330317.6:ENST00000476326.5:ENST00000398208.3:ENST00000492742.5:ENST00000479429.5:ENST00000463902.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	25	2	2.28103	3.38605	4.49107	0.0151554	0.00220544	0.108535	0.0417893
chr8	11859226	11859324	3908769	0	-	0.571429	(0.57,1]	chr8	358204	9	INTRON	INTRON	CTSB	ENSG00000164733.22	ENST00000677671.1:ENST00000678092.1:ENST00000679128.1:ENST00000677873.1:ENST00000676691.1:ENST00000678598.1:ENST00000353047.11:ENST00000677650.1:ENST00000526481.7:ENST00000676825.1:ENST00000678242.1:ENST00000677366.1:ENST00000677544.1:ENST00000530640.7:ENST00000677418.1:ENST00000677047.1:ENST00000676502.1:ENST00000531089.6:ENST00000678629.1:ENST00000678145.1:ENST00000678929.1:ENST00000677819.1:ENST00000677415.1:ENST00000678357.1:ENST00000676755.1:ENST00000679051.1:ENST00000453527.7:ENST00000678067.1:ENST00000679140.1:ENST00000677082.1:ENST00000533455.6:ENST00000531551.5:ENST00000534382.6:ENST00000679214.1:ENST00000531502.6:ENST00000534510.6:ENST00000677865.1:ENST00000533572.6:ENST00000345125.8:ENST00000526645.6:ENST00000534149.6:ENST00000505496.7:ENST00000532392.2:ENST00000676843.1:ENST00000524500.6:ENST00000525076.6:ENST00000527215.7:ENST00000528965.2:ENST00000532656.7:ENST00000526195.6:ENST00000678615.1:ENST00000527243.6:ENST00000530296.6:ENST00000534636.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	25	2	2.28103	3.38605	4.49107	0.0151554	0.00220544	0.108535	0.0417893
chr12	116148005	116148105	5424249	0	-	0.53	(0.515,0.57]	chr12	518263	361	INTRON	INTRON	MED13L	ENSG00000123066.9	ENST00000281928.9:ENST00000650226.1:ENST00000548743.2:ENST00000647567.1:ENST00000551197.2	protein_coding	protein_coding	protein_coding	protein_coding	5	53	2	1.49552	3.386015	5.27651	0.0385038	5.11033e-4	0.159277	0.020816
chr7	5207927	5208027	3272139	0	+	0.54	(0.515,0.57]	chr7	304097	79	INTRON	INTRON	WIPI2	ENSG00000157954.15	ENST00000401525.7:ENST00000288828.9:ENST00000404704.7:ENST00000466014.5:ENST00000485854.5:ENST00000382384.6:ENST00000496867.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	37	2	1.7074	3.385995	5.06459	0.0779432	6.03964e-4	0.196685	0.0223465
chr15	75454126	75454215	6224103	0	-	0.573034	(0.57,1]	chr15	594546	3	INTRON	INTRON	SIN3A	ENSG00000169375.16	ENST00000360439.8:ENST00000564778.5:ENST00000562776.5:ENST00000568431.5:ENST00000570115.5:ENST00000568309.5:ENST00000568190.1	protein_coding	protein_coding	protein_coding	protein_coding	2	25	2	2.17026	3.385935	4.60161	0.0220522	0.00142229	0.123836	0.0340865
chr4	6816292	6816392	1921924	0	+	0.58	(0.57,1]	chr4	192991	113	INTRON	INTRON	KIAA0232	ENSG00000170871.12	ENST00000503278.1:ENST00000508423.1:ENST00000307659.6:ENST00000425103.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	56	2	3.14233	3.3857150000000003	3.6291	3.02868e-4	4.99296e-5	0.0160895	0.00578948
chr10	32325221	32325321	4591425	0	-	0.27	[0,0.28]	chr10	423379	189	INTRON	INTRON	EPC1	ENSG00000120616.16	ENST00000375110.6:ENST00000319778.11:ENST00000667706.1:ENST00000263062.8:ENST00000479380.2:ENST00000495790.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	36	2	2.57033	3.385695	4.20106	0.0695895	0.0305273	0.184298	0.143385
chr3	152355508	152355608	1535856	0	+	0.21	[0,0.28]	chr3	160003	199	INTRON	INTRON	MBNL1	ENSG00000152601.18	ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000495875.6:ENST00000324210.10:ENST00000493459.5:ENST00000459747.1:ENST00000460591.5:ENST00000545754.5:ENST00000357472.7:ENST00000324196.9:ENST00000498502.5:ENST00000463374.5:ENST00000485910.5:ENST00000465907.6:ENST00000492948.5:ENST00000485509.5:ENST00000464596.5	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	2.57033	3.385695	4.20106	0.0695895	0.0305273	0.184298	0.143385
chr7	111070141	111070241	3619183	0	-	0.26	[0,0.28]	chr7	337093	1062	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	36	2	2.57033	3.385695	4.20106	0.0695895	0.0305273	0.184298	0.143385
chr10	21661951	21662051	4405700	0	+	0.29	(0.28,0.32]	chr10	406493	98	INTRON	INTRON	MLLT10	ENSG00000078403.17	ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000651298.1:ENST00000377059.7:ENST00000652258.1:ENST00000651382.1:ENST00000438473.6:ENST00000650921.1:ENST00000651405.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	56	2	2.1076	3.3855950000000004	4.66359	0.0193496	0.0133585	0.108861	0.100772
chr22	41351946	41352046	7523228	0	+	0.53	(0.515,0.57]	chr22	768891	3	SS5_PROX	SS5_PROX:INTRON	ZC3H7B	ENSG00000100403.12	ENST00000352645.5	protein_coding	protein_coding	protein_coding	protein_coding	2	37	2	2.08547	3.385575	4.68568	0.0289426	0.00270027	0.1274	0.0479115
chr10	124916341	124916433	4712553	0	-	0.402174	(0.378,0.408]	chr10	434836	1	EXON_LNCRNA	EXON_LNCRNA	ENSG00000289280	ENSG00000289280.1	ENST00000692712.1	lncRNA	lncRNA	lncRNA	lncRNA	6	180	2	3.05387	3.38557	3.71727	1.51003e-4	6.0871e-6	0.0106137	0.00185549
chr1	229335819	229335919	652542	0	-	0.54	(0.515,0.57]	chr1	77248	79	INTRON	INTRON	CCSAP	ENSG00000154429.11	ENST00000366687.5:ENST00000284617.7:ENST00000366686.1:ENST00000483092.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	48	2	1.79385	3.385535	4.97722	0.0201222	0.00168681	0.121243	0.0370386
chr6	118933425	118933518	3202132	0	-	0.591398	(0.57,1]	chr6	298128	3	INTRON	INTRON	MCM9	ENSG00000111877.18	ENST00000316316.10:ENST00000619706.5:ENST00000316068.7:ENST00000425154.6:ENST00000505446.1	protein_coding	protein_coding	protein_coding	protein_coding	4	56	2	2.52633	3.3853999999999997	4.24447	0.0018535	7.02904e-6	0.039946	0.00198457
chr17	27515611	27515710	6581359	0	+	0.323232	(0.32,0.35]	chr17	639666	314	INTRON	INTRON	KSR1	ENSG00000141068.15	ENST00000644974.2:ENST00000583370.5:ENST00000398988.7:ENST00000268763.10:ENST00000509603.6:ENST00000582311.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	31	2	2.40308	3.385315	4.36755	0.0417732	0.0300552	0.161736	0.129138
chr20	38515691	38515791	7270319	0	+	0.35	(0.32,0.35]	chr20	738783	1	SS3_PROX	SS3_PROX:INTRON	RALGAPB	ENSG00000170471.15	ENST00000397042.7:ENST00000262879.11:ENST00000397040.5:ENST00000438490.2:ENST00000461423.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	31	2	2.40308	3.385315	4.36755	0.0417732	0.0300552	0.161736	0.129138
chr20	50565761	50565857	7286470	0	+	0.34375	(0.32,0.35]	chr20	741254	3	INTRON	INTRON	PTPN1	ENSG00000196396.10	ENST00000541713.5:ENST00000371621.5	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	2.40308	3.385315	4.36755	0.0417732	0.0300552	0.161736	0.129138
chr8	47515726	47515826	3749785	0	+	0.34	(0.32,0.35]	chr8	348837	748	INTRON	INTRON	SPIDR	ENSG00000164808.17	ENST00000541342.2:ENST00000518074.5:ENST00000297423.9:ENST00000521550.5:ENST00000524126.5:ENST00000524141.5:ENST00000519661.5:ENST00000522117.5:ENST00000524033.5:ENST00000524006.5:ENST00000521214.5:ENST00000519401.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	31	2	2.40308	3.385315	4.36755	0.0417732	0.0300552	0.161736	0.129138
chr1	45806867	45806967	93844	0	+	0.48	(0.476,0.515]	chr1	12684	24	INTRON	INTRON	MAST2	ENSG00000086015.23	ENST00000470809.1:ENST00000361297.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	41	2	1.99197	3.385265	4.77856	0.039572	0.00305743	0.143072	0.0509893
chr18	804724	804824	6940631	0	-	0.5	(0.476,0.515]	chr18	686527	67	INTRON	INTRON	YES1	ENSG00000176105.14	ENST00000584307.5:ENST00000314574.5:ENST00000577611.1:ENST00000581960.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	137	2	3.25101	3.38525	3.51949	7.2893e-5	5.51244e-5	0.00767614	0.00608953
chr1	108320710	108320809	176844	0	+	0.323232	(0.32,0.35]	chr1	19165	61	INTRON	INTRON	SLC25A24P1	ENSG00000241361.8	ENST00000411846.6:ENST00000434803.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	1	31	2	2.31405	3.38517	4.45629	0.0517107	0.0246089	0.176696	0.12011
chr1	113942358	113942458	191927	0	+	0.33	(0.32,0.35]	chr1	21149	5	INTRON	INTRON	HIPK1	ENSG00000163349.22	ENST00000426820.7:ENST00000626993.2:ENST00000369559.8:ENST00000369558.5:ENST00000369561.8:ENST00000369555.6	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	2.31405	3.38517	4.45629	0.0517107	0.0246089	0.176696	0.12011
chr12	79786576	79786675	5375014	0	-	0.343434	(0.32,0.35]	chr12	512658	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PPP1R12A	ENSG00000058272.19	ENST00000261207.9:ENST00000450142.7:ENST00000437004.6:ENST00000546762.5:ENST00000634739.1:ENST00000550903.5:ENST00000550299.5:ENST00000550351.5:ENST00000546369.5:ENST00000550107.5:ENST00000548908.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	31	2	2.31405	3.38517	4.45629	0.0517107	0.0246089	0.176696	0.12011
chr6	90545227	90545323	3162366	0	-	0.322917	(0.32,0.35]	chr6	294927	2	INTRON	INTRON	MAP3K7	ENSG00000135341.18	ENST00000369332.7:ENST00000369327.7:ENST00000369325.7:ENST00000369329.8:ENST00000369320.1	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	2.31405	3.38517	4.45629	0.0517107	0.0246089	0.176696	0.12011
chr9	135879632	135879732	4371988	0	-	0.35	(0.32,0.35]	chr9	402479	127	INTRON	INTRON	CAMSAP1	ENSG00000130559.19	ENST00000389532.9:ENST00000312405.10:ENST00000409386.3:ENST00000468150.1:ENST00000460094.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	31	2	2.31405	3.38517	4.45629	0.0517107	0.0246089	0.176696	0.12011
chr11	699177	699273	4720004	0	+	0.364583	(0.35,0.378]	chr11	436260	4	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	EPS8L2:TMEM80	ENSG00000177106.17:ENSG00000177042.16	ENST00000524763.5:ENST00000608174.6:ENST00000397512.8:ENST00000526170.6:ENST00000492023.1:ENST00000488769.2:ENST00000397510.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	33	2	2.47065	3.38513	4.29961	0.0386172	0.0158483	0.142656	0.109464
chr18	659194	659248	6855445	0	+	0.351852	(0.35,0.378]	chr18	679589	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TYMS	ENSG00000176890.16	ENST00000323274.15:ENST00000579128.1:ENST00000323224.7:ENST00000323250.9:ENST00000584122.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	33	2	2.47065	3.38513	4.29961	0.0386172	0.0158483	0.142656	0.109464
chr7	92769803	92769903	3572592	0	-	0.36	(0.35,0.378]	chr7	332804	437	INTRON	INTRON	CDK6	ENSG00000105810.10	ENST00000424848.3:ENST00000265734.8	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	2.47065	3.38513	4.29961	0.0386172	0.0158483	0.142656	0.109464
chr6	169691885	169691983	3267027	0	-	0.397959	(0.378,0.408]	chr6	303253	22	INTRON	INTRON	WDR27	ENSG00000184465.16	ENST00000448612.6:ENST00000648472.1:ENST00000423258.5:ENST00000647790.1:ENST00000647873.1:ENST00000649303.1:ENST00000647889.1:ENST00000648017.1:ENST00000650296.1:ENST00000546953.1:ENST00000649806.1:ENST00000474018.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	47	2	1.89251	3.385065	4.87762	0.0251428	0.00553849	0.133404	0.0648867
chr7	102124927	102125027	3369451	0	+	0.53	(0.515,0.57]	chr7	315269	93	INTRON	INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000560541.5:ENST00000558836.5:ENST00000465461.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	35	2	2.26012	3.38506	4.51	0.0160033	0.00809449	0.109464	0.0766625
chr7	17918421	17918520	3496346	0	-	0.282828	(0.28,0.32]	chr7	326520	107	INTRON	INTRON	SNX13	ENSG00000071189.21	ENST00000428135.7:ENST00000611725.4:ENST00000409076.6:ENST00000444712.5:ENST00000482558.5:ENST00000409604.1:ENST00000475800.5:ENST00000474067.5:ENST00000471744.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	44	2	1.90263	3.38497	4.86731	0.0503272	0.0116253	0.17488	0.0889104
chr11	3752118	3752217	4894708	0	-	0.333333	(0.32,0.35]	chr11	458870	71	INTRON	INTRON	NUP98	ENSG00000110713.17	ENST00000359171.8:ENST00000324932.12:ENST00000650171.1:ENST00000355260.7:ENST00000397004.8:ENST00000397007.8:ENST00000527104.5:ENST00000529379.1:ENST00000397013.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	58	2	1.63843	3.38483	5.13123	0.0360919	0.00394704	0.152563	0.0548259
chr1	176065483	176065583	590283	0	-	0.39	(0.378,0.408]	chr1	70908	188	INTRON	INTRON	COP1	ENSG00000143207.21	ENST00000367669.8:ENST00000367667.5:ENST00000461830.6:ENST00000367666.5:ENST00000649803.1:ENST00000308769.12:ENST00000459744.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	47	2	1.59317	3.3847199999999997	5.17627	0.0603812	0.00208234	0.19151	0.0411801
chr16	31180327	31180427	6340554	0	+	0.64	(0.57,1]	chr16	608316	1	SS5_PROX	SS5_PROX:INTRON	FUS	ENSG00000089280.19	ENST00000566605.5:ENST00000254108.12:ENST00000380244.7:ENST00000487045.6:ENST00000487509.6:ENST00000568685.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	22	309	2	2.9867	3.38467	3.78264	3.52632e-7	3.92331e-11	3.01154e-4	5.63867e-7
chr15	28278179	28278279	6123621	0	-	0.52	(0.515,0.57]	chr15	583381	28	INTRON	INTRON	HERC2	ENSG00000128731.18	ENST00000261609.13:ENST00000564734.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	98	2	3.27241	3.38462	3.49683	1.80226e-4	6.73116e-5	0.0116696	0.00723304
chr7	105034826	105034926	3374824	0	+	0.54	(0.515,0.57]	chr7	315854	199	INTRON	INTRON	KMT2E	ENSG00000005483.22	ENST00000622386.2:ENST00000257745.9:ENST00000334884.9:ENST00000311117.8:ENST00000478990.5:ENST00000480368.5:ENST00000495267.5:ENST00000476671.5:ENST00000667857.1:ENST00000474203.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	35	2	1.86007	3.384595	4.90912	0.0526611	0.0021669	0.178401	0.0417866
chr16	4437101	4437201	6282671	0	+	0.53	(0.515,0.57]	chr16	601400	3	SS3_PROX	SS3_PROX:INTRON	DNAJA3	ENSG00000103423.14	ENST00000431375.6:ENST00000355296.8:ENST00000576911.5:ENST00000575106.5:ENST00000570857.5:ENST00000262375.11:ENST00000574895.1:ENST00000573120.5:ENST00000572139.5:ENST00000572009.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	36	2	2.45585	3.3845549999999998	4.31326	0.0141817	0.00797827	0.0959618	0.0798772
chr12	121312799	121312899	5436768	0	-	0.52	(0.515,0.57]	chr12	519847	24	INTRON	INTRON	ANAPC5	ENSG00000089053.13	ENST00000261819.8:ENST00000535641.5:ENST00000541887.5:ENST00000534976.5:ENST00000441917.6:ENST00000539079.5:ENST00000544314.5:ENST00000535482.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	73	2	2.88267	3.3844149999999997	3.88616	0.00152842	1.07993e-4	0.0353936	0.00878438
chr9	112491115	112491215	4185831	0	+	0.46	(0.44,0.476]	chr9	381813	36	INTRON	INTRON	KIAA1958	ENSG00000165185.15	ENST00000337530.11:ENST00000536272.5:ENST00000374244.3	protein_coding	protein_coding	protein_coding	protein_coding	2	41	2	1.83899	3.384335	4.92968	0.0589734	0.00171443	0.167915	0.0381936
chr14	49619540	49619640	5885921	0	-	0.58	(0.57,1]	chr14	558499	4	SS3_PROX	SS3_PROX:INTRON	RPL36AL	ENSG00000165502.7	ENST00000298289.7	protein_coding	protein_coding	protein_coding	protein_coding	3	46	2	3.13943	3.384265	3.6291	3.02868e-4	3.01503e-4	0.0160895	0.0155054
chr7	74192610	74192701	3332414	0	+	0.296703	(0.28,0.32]	chr7	310057	10	INTRON	INTRON	EIF4H	ENSG00000106682.16	ENST00000678438.1:ENST00000677998.1:ENST00000495187.2:ENST00000265753.13:ENST00000353999.6:ENST00000677570.1:ENST00000677681.1:ENST00000678815.1:ENST00000679266.1:ENST00000679287.1:ENST00000678341.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	106	2	3.03222	3.38424	3.73626	9.72587e-4	7.58796e-4	0.0287313	0.025219
chr6	147778939	147779039	2991788	0	+	0.35	(0.32,0.35]	chr6	280177	415	INTRON	INTRON	ENSG00000227681	ENSG00000227681.5	ENST00000427015.1	lncRNA	lncRNA	lncRNA	lncRNA	2	46	2	1.83416	3.3842049999999997	4.93425	0.0631198	0.00281048	0.176946	0.0488779
chr6	156966548	156966647	3009056	0	+	0.50505	(0.476,0.515]	chr6	281124	228	INTRON	INTRON	ARID1B	ENSG00000049618.24	ENST00000346085.10:ENST00000636930.2:ENST00000647938.1:ENST00000350026.10:ENST00000674298.1:ENST00000674190.1:ENST00000414678.7:ENST00000638000.1:ENST00000319584.11:ENST00000452544.2:ENST00000637887.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	63	2	3.10264	3.384145	3.66565	0.00543163	4.18031e-4	0.0645052	0.0182827
chr5	109781462	109781530	2449933	0	+	0.411765	(0.408,0.44]	chr5	234629	2	CDS	CDS:EXON_MRNA	MAN2A1	ENSG00000112893.10	ENST00000261483.5	protein_coding	protein_coding	protein_coding	protein_coding	3	46	2	1.8749	3.3840850000000002	4.89327	0.0264246	0.00458906	0.133676	0.0595107
chr3	183638266	183638364	1579814	0	+	0.326531	(0.32,0.35]	chr3	162962	12	INTRON	INTRON	KLHL24	ENSG00000114796.16	ENST00000493074.1:ENST00000437402.5:ENST00000454495.6:ENST00000242810.11:ENST00000454652.6:ENST00000482138.1:ENST00000427201.2:ENST00000468101.5:ENST00000473045.5:ENST00000461813.5:ENST00000475827.5:ENST00000468001.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	74	2	2.9451	3.38403	3.82296	0.011051	2.45656e-4	0.0873897	0.0138769
chr2	242137094	242137193	1057226	0	+	0.373737	(0.35,0.378]	chr2	112759	48	INTRON	INTRON	LINC01881	ENSG00000220804.10	ENST00000456398.5:ENST00000692555.1:ENST00000622435.4:ENST00000614114.4:ENST00000682782.1:ENST00000433444.1:ENST00000683938.1:ENST00000682139.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	2	48	2	2.36677	3.384025	4.40128	0.0139343	0.0120289	0.0962115	0.0957526
chr20	62031905	62032005	7360578	0	-	0.5	(0.476,0.515]	chr20	750714	168	INTRON	INTRON	TAF4	ENSG00000130699.20	ENST00000252996.9:ENST00000608887.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	63	2	3.35059	3.383935	3.41728	0.00171515	0.00165726	0.0381936	0.0369207
chr16	15652150	15652250	6306902	0	+	0.44	(0.408,0.44]	chr16	603411	1	SS5_PROX	SS5_PROX:INTRON	NDE1	ENSG00000072864.16	ENST00000396355.5:ENST00000674888.1:ENST00000675171.1:ENST00000675951.1:ENST00000674900.1:ENST00000674588.1:ENST00000674538.1:ENST00000396354.6:ENST00000675926.1:ENST00000570727.5:ENST00000573203.5:ENST00000674995.1:ENST00000674554.1:ENST00000674581.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	46	2	1.6306	3.38381	5.13702	0.0544158	0.00202889	0.182272	0.04086
chr13	20825472	20825572	5555564	0	-	0.36	(0.35,0.378]	chr13	530988	28	INTRON	INTRON	XPO4	ENSG00000132953.18	ENST00000255305.11	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	2.57049	3.383795	4.1971	0.0367539	0.0262669	0.138959	0.133676
chr13	98563894	98563994	5643661	0	-	0.36	(0.35,0.378]	chr13	537505	420	INTRON	INTRON	STK24	ENSG00000102572.15	ENST00000539966.6:ENST00000397517.6:ENST00000491878.5:ENST00000481288.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	30	2	2.57049	3.383795	4.1971	0.0367539	0.0262669	0.138959	0.133676
chr17	18027187	18027278	6738136	0	-	0.351648	(0.35,0.378]	chr17	661224	4	INTRON	INTRON	ATPAF2	ENSG00000171953.16	ENST00000584205.5:ENST00000462733.5:ENST00000585101.5:ENST00000474627.8:ENST00000444058.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	30	2	2.57049	3.383795	4.1971	0.0367539	0.0262669	0.138959	0.133676
chr19	40044884	40044984	7182813	0	-	0.37	(0.35,0.378]	chr19	726353	79	INTRON	INTRON	ZNF780B	ENSG00000128000.17	ENST00000434248.6:ENST00000221355.10:ENST00000598845.5	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	2.57049	3.383795	4.1971	0.0367539	0.0262669	0.138959	0.133676
chr3	133646627	133646725	1821614	0	-	0.357143	(0.35,0.378]	chr3	183331	19	INTRON	INTRON	TOPBP1	ENSG00000163781.14	ENST00000260810.10:ENST00000642236.1:ENST00000511439.5:ENST00000509162.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	30	2	2.57049	3.383795	4.1971	0.0367539	0.0262669	0.138959	0.133676
chr4	145062004	145062103	2254395	0	-	0.353535	(0.35,0.378]	chr4	220103	79	INTRON	INTRON	ANAPC10	ENSG00000164162.14	ENST00000641499.1:ENST00000506851.5:ENST00000613466.4:ENST00000507656.6:ENST00000502651.5:ENST00000309439.9:ENST00000451299.6:ENST00000510270.5:ENST00000511466.5:ENST00000514390.5:ENST00000513054.5:ENST00000502562.5:ENST00000512680.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	30	2	2.57049	3.383795	4.1971	0.0367539	0.0262669	0.138959	0.133676
chr10	42544456	42544556	4603772	0	-	0.3	(0.28,0.32]	chr10	424114	184	INTRON	INTRON	ZNF37BP	ENSG00000234420.8	ENST00000452075.7:ENST00000692055.1:ENST00000689225.1:ENST00000686311.1:ENST00000686673.1:ENST00000688789.1:ENST00000690905.1:ENST00000435805.7:ENST00000687308.1:ENST00000692559.1:ENST00000690442.1:ENST00000473592.1:ENST00000691808.1:ENST00000692594.1:ENST00000691366.1:ENST00000689409.1:ENST00000685241.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	2	44	2	1.96475	3.3836500000000003	4.80255	0.0428385	0.0137406	0.162255	0.0949306
chr6	36514341	36514440	3089045	0	-	0.30303	(0.28,0.32]	chr6	288948	64	INTRON	INTRON	STK38	ENSG00000112079.9	ENST00000229812.8	protein_coding	protein_coding	protein_coding	protein_coding	2	44	2	1.96475	3.3836500000000003	4.80255	0.0428385	0.0137406	0.162255	0.0949306
chrX	54568487	54568587	7664998	0	+	0.33	(0.32,0.35]	chrX	784798	13	INTRON	INTRON	GNL3L	ENSG00000130119.17	ENST00000674498.1	protein_coding	protein_coding	protein_coding	protein_coding	2	74	2	3.28107	3.383635	3.4862	0.00262488	0.001711	0.0470772	0.037419
chr1	202778993	202779093	620456	0	-	0.37	(0.35,0.378]	chr1	73670	15	INTRON	INTRON	KDM5B	ENSG00000117139.18	ENST00000367265.9:ENST00000648338.1:ENST00000649542.1:ENST00000647757.1:ENST00000367264.7:ENST00000648473.1:ENST00000650569.1:ENST00000648056.1:ENST00000649770.1:ENST00000648469.1:ENST00000650417.1:ENST00000235790.9:ENST00000648738.1:ENST00000648958.1:ENST00000602511.1:ENST00000650368.1:ENST00000649200.1:ENST00000648354.1:ENST00000650493.1:ENST00000470573.5:ENST00000467487.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	49	2	1.97646	3.3836250000000003	4.79079	0.0193942	0.00846427	0.119831	0.0776969
chr17	81628728	81628827	6849526	0	-	0.353535	(0.35,0.378]	chr17	678237	61	INTRON	INTRON	NPLOC4	ENSG00000182446.14	ENST00000331134.11:ENST00000374747.9:ENST00000574897.5:ENST00000625705.1:ENST00000570300.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	49	2	1.97646	3.3836250000000003	4.79079	0.0193942	0.00846427	0.119831	0.0776969
chr3	15773576	15773676	1623576	0	-	0.36	(0.35,0.378]	chr3	168009	69	INTRON	INTRON	ANKRD28	ENSG00000206560.12	ENST00000399451.6:ENST00000624145.3:ENST00000683139.1:ENST00000412318.5:ENST00000497037.5:ENST00000451422.1:ENST00000498524.5:ENST00000439830.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	49	2	1.97646	3.3836250000000003	4.79079	0.0193942	0.00846427	0.119831	0.0776969
chr1	89902623	89902723	160342	0	+	0.52	(0.515,0.57]	chr1	17285	556	INTRON	INTRON	LRRC8D	ENSG00000171492.14	ENST00000525774.5:ENST00000337338.9:ENST00000394593.7:ENST00000532201.5:ENST00000414841.1:ENST00000527156.1:ENST00000441269.2	protein_coding	protein_coding	protein_coding	protein_coding	1	26	2	2.56306	3.383435	4.20381	0.0247751	0.0189208	0.131869	0.108861
chr1	203817891	203817980	296905	0	+	0.52809	(0.515,0.57]	chr1	34145	4	INTRON	INTRON	ZC3H11A:ZBED6	ENSG00000058673.17:ENSG00000257315.3	ENST00000367210.3:ENST00000453771.5:ENST00000432282.5:ENST00000638800.1:ENST00000367214.5:ENST00000639812.1:ENST00000367212.7:ENST00000332127.8:ENST00000550078.2:ENST00000495527.5:ENST00000640465.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	26	2	2.56306	3.383435	4.20381	0.0247751	0.0189208	0.131869	0.108861
chr12	49426544	49426644	5133540	0	+	0.55	(0.515,0.57]	chr12	483975	196	INTRON	INTRON	SPATS2	ENSG00000123352.18	ENST00000550997.5:ENST00000549538.5:ENST00000549412.5:ENST00000550643.5:ENST00000548654.5:ENST00000548710.5:ENST00000549179.5:ENST00000548377.5:ENST00000549298.5:ENST00000552918.6:ENST00000549375.5:ENST00000553127.5:ENST00000321898.10:ENST00000551540.5:ENST00000548777.5:ENST00000552171.1:ENST00000547865.5:ENST00000548388.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	26	2	2.56306	3.383435	4.20381	0.0247751	0.0189208	0.131869	0.108861
chr12	64436174	64436272	5153226	0	+	0.530612	(0.515,0.57]	chr12	487833	1	INTRON	INTRON	XPOT	ENSG00000184575.12	ENST00000332707.10	protein_coding	protein_coding	protein_coding	protein_coding	1	26	2	2.56306	3.383435	4.20381	0.0247751	0.0189208	0.131869	0.108861
chr7	6242905	6243005	3477087	0	-	0.55	(0.515,0.57]	chr7	325332	303	INTRON	INTRON	CYTH3	ENSG00000008256.16	ENST00000396741.3:ENST00000350796.8:ENST00000482460.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	26	2	2.56306	3.383435	4.20381	0.0247751	0.0189208	0.131869	0.108861
chr7	151127480	151127579	3448781	0	+	0.555556	(0.515,0.57]	chr7	322226	32	INTRON	INTRON	AGAP3	ENSG00000133612.19	ENST00000463381.5:ENST00000397238.7:ENST00000622464.4:ENST00000485904.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	26	2	2.56306	3.383435	4.20381	0.0247751	0.0189208	0.131869	0.108861
chr20	38073512	38073612	7269283	0	+	0.47	(0.44,0.476]	chr20	738717	30	INTRON	INTRON	RPRD1B	ENSG00000101413.12	ENST00000462548.6:ENST00000373433.9:ENST00000449186.2:ENST00000618318.1:ENST00000614670.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	38	2	2.00609	3.3833849999999996	4.76068	0.0360127	0.00653414	0.152355	0.0699952
chr10	28571215	28571315	4414186	0	+	0.37	(0.35,0.378]	chr10	407148	328	INTRON	INTRON	WAC	ENSG00000095787.24	ENST00000680735.1:ENST00000375664.8:ENST00000428935.6:ENST00000651598.1:ENST00000628285.3:ENST00000681112.1:ENST00000679570.1:ENST00000375646.5:ENST00000354911.9:ENST00000347934.8:ENST00000420266.6:ENST00000651885.1:ENST00000651441.1:ENST00000679398.1:ENST00000424454.5:ENST00000442148.6:ENST00000448193.5:ENST00000414108.6:ENST00000679428.1:ENST00000439676.5:ENST00000345541.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	31	2	2.79643	3.383375	3.97032	0.0578667	0.013543	0.167723	0.101363
chr2	84437606	84437704	1168615	0	-	0.357143	(0.35,0.378]	chr2	124421	11	INTRON	INTRON	SUCLG1	ENSG00000163541.12	ENST00000393868.7:ENST00000651342.1:ENST00000488234.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	31	2	2.79643	3.383375	3.97032	0.0578667	0.013543	0.167723	0.101363
chr8	30098057	30098155	3726652	0	+	0.367347	(0.35,0.378]	chr8	346355	18	INTRON	INTRON	LEPROTL1	ENSG00000104660.19	ENST00000321250.13:ENST00000518001.1:ENST00000650149.1:ENST00000520682.5:ENST00000442880.6:ENST00000523116.5:ENST00000520739.5:ENST00000518192.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	31	2	2.79643	3.383375	3.97032	0.0578667	0.013543	0.167723	0.101363
chr9	77351846	77351946	4146728	0	+	0.37	(0.35,0.378]	chr9	378030	4	SS5_PROX	SS5_PROX:INTRON	VPS13A	ENSG00000197969.14	ENST00000376636.7:ENST00000360280.8:ENST00000643348.1:ENST00000645632.1:ENST00000355766.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	31	2	2.79643	3.383375	3.97032	0.0578667	0.013543	0.167723	0.101363
chr17	16010448	16010547	6560650	0	+	0.565657	(0.515,0.57]	chr17	637699	35	INTRON	INTRON	TTC19	ENSG00000011295.16	ENST00000475723.5:ENST00000261647.10:ENST00000497842.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	73	2	2.92045	3.38335	3.84625	0.00128922	1.34155e-4	0.0328334	0.00998237
chr22	49519180	49519280	7601271	0	-	0.33	(0.32,0.35]	chr22	778566	776	INTRON	INTRON	MIR3667HG	ENSG00000188511.13	ENST00000414287.5:ENST00000416411.1	lncRNA	lncRNA	lncRNA	lncRNA	2	73	2	3.35116	3.38335	3.41554	0.00283808	0.00153152	0.0473151	0.0361484
chrX	136865304	136865404	7897525	0	-	0.35	(0.32,0.35]	chrX	804139	164	INTRON	INTRON	RBMX	ENSG00000147274.14	ENST00000561733.5	protein_coding	processed_transcript	protein_coding	processed_transcript	2	73	2	3.35116	3.38335	3.41554	0.00283808	0.00153152	0.0473151	0.0361484
chr12	53470757	53470852	5143089	0	+	0.4	(0.378,0.408]	chr12	485442	16	INTRON	INTRON	PCBP2	ENSG00000197111.16	ENST00000546463.6:ENST00000437231.5:ENST00000447282.5:ENST00000359282.9:ENST00000549863.5:ENST00000359462.9:ENST00000552296.6:ENST00000552819.5:ENST00000455667.7:ENST00000439930.7:ENST00000548933.5:ENST00000562264.5:ENST00000550585.5:ENST00000553064.6:ENST00000547859.2:ENST00000547048.5:ENST00000550733.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	150	2	2.80517	3.383255	3.96134	1.71065e-4	4.88656e-5	0.0119955	0.00571605
chr8	140989332	140989431	4079959	0	-	0.444444	(0.44,0.476]	chr8	370590	48	INTRON	INTRON	PTK2	ENSG00000169398.20	ENST00000696786.1:ENST00000522684.5:ENST00000395218.3:ENST00000521059.5:ENST00000519993.5:ENST00000340930.7:ENST00000524357.5:ENST00000521791.5:ENST00000523067.5:ENST00000520828.5:ENST00000519881.5:ENST00000520892.5:ENST00000517453.5:ENST00000520045.5:ENST00000521332.5:ENST00000524040.5:ENST00000523679.1:ENST00000524257.5:ENST00000523797.1:ENST00000519635.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	39	2	2.33272	3.383245	4.43377	0.0162803	0.0129984	0.101453	0.0991656
chr4	105446121	105446201	2216402	0	-	0.2875	(0.28,0.32]	chr4	217249	4	SS5_PROX	SS5_PROX:INTRON	PPA2	ENSG00000138777.20	ENST00000341695.10:ENST00000348706.9:ENST00000509031.5:ENST00000351450.10:ENST00000354147.7:ENST00000432483.6:ENST00000515567.5:ENST00000503171.5:ENST00000510015.5:ENST00000509426.5:ENST00000508518.5:ENST00000514209.5:ENST00000506815.5:ENST00000457404.6:ENST00000502833.5:ENST00000504028.5:ENST00000502596.5:ENST00000513649.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	49	2	1.86684	3.3832299999999997	4.89962	0.0605813	0.00425206	0.171122	0.0595557
chr12	108558144	108558242	5405735	0	-	0.377551	(0.35,0.378]	chr12	515930	41	INTRON	INTRON	SART3	ENSG00000075856.12	ENST00000546815.6:ENST00000651280.1:ENST00000228284.8:ENST00000546728.5:ENST00000431469.6:ENST00000547528.5:ENST00000552221.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	40	2	1.9755	3.3831450000000003	4.79079	0.0398617	0.00846427	0.161534	0.0776969
chr2	216117894	216117994	1014431	0	+	0.37	(0.35,0.378]	chr2	107951	1	SS5_PROX	SS5_PROX:INTRON	XRCC5	ENSG00000079246.16	ENST00000392133.7:ENST00000429133.5:ENST00000392132.7:ENST00000417391.1:ENST00000451695.5:ENST00000460284.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	40	2	1.9755	3.3831450000000003	4.79079	0.0398617	0.00846427	0.161534	0.0776969
chr1	40993286	40993381	83341	0	+	0.515789	(0.515,0.57]	chr1	10862	11	INTRON	INTRON	CTPS1	ENSG00000171793.17	ENST00000696107.1:ENST00000480420.6:ENST00000650070.2:ENST00000649864.1:ENST00000648914.1:ENST00000648020.2:ENST00000650634.2:ENST00000696108.1:ENST00000463285.7:ENST00000649124.2:ENST00000498694.2:ENST00000696070.1:ENST00000648801.1:ENST00000470271.6:ENST00000696109.1:ENST00000479480.6:ENST00000372616.1:ENST00000649215.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	26	2	2.35125	3.383115	4.41498	0.0436431	0.0106866	0.162255	0.0861859
chr1	113750681	113750780	525338	0	-	0.535354	(0.515,0.57]	chr1	61809	7	INTRON	INTRON	PHTF1	ENSG00000116793.16	ENST00000369604.6:ENST00000393357.6:ENST00000369600.5:ENST00000369598.5:ENST00000357783.6:ENST00000446739.1:ENST00000493212.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	26	2	2.35125	3.383115	4.41498	0.0436431	0.0106866	0.162255	0.0861859
chr1	213258157	213258257	312783	0	+	0.52	(0.515,0.57]	chr1	35979	151	INTRON	INTRON	RPS6KC1	ENSG00000136643.12	ENST00000615329.4:ENST00000543354.5:ENST00000614059.4:ENST00000543470.5:ENST00000366960.8:ENST00000366959.4:ENST00000490299.5:ENST00000491616.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	26	2	2.35125	3.383115	4.41498	0.0436431	0.0106866	0.162255	0.0861859
chr16	74470972	74471072	6523951	0	-	0.53	(0.515,0.57]	chr16	631749	4	SS5_PROX	SS5_PROX:INTRON	GLG1	ENSG00000090863.12	ENST00000205061.9:ENST00000422840.7:ENST00000447066.6:ENST00000562090.5:ENST00000567951.5:ENST00000563432.5:ENST00000566601.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	26	2	2.35125	3.383115	4.41498	0.0436431	0.0106866	0.162255	0.0861859
chr17	27468520	27468620	6580886	0	+	0.55	(0.515,0.57]	chr17	639655	113	INTRON	INTRON	KSR1	ENSG00000141068.15	ENST00000644974.2:ENST00000579309.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	26	2	2.35125	3.383115	4.41498	0.0436431	0.0106866	0.162255	0.0861859
chr19	52208261	52208361	7094446	0	+	0.52	(0.515,0.57]	chr19	711187	18	INTRON	INTRON	PPP2R1A	ENSG00000105568.18	ENST00000490868.5:ENST00000454220.6:ENST00000322088.11:ENST00000468280.5:ENST00000462990.5:ENST00000495876.5:ENST00000473455.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	26	2	2.35125	3.383115	4.41498	0.0436431	0.0106866	0.162255	0.0861859
chr20	62847416	62847516	7361790	0	-	0.52	(0.515,0.57]	chr20	751095	9	INTRON	INTRON	TCFL5	ENSG00000101190.13	ENST00000335351.8:ENST00000217162.5	protein_coding	protein_coding	protein_coding	protein_coding	1	26	2	2.35125	3.383115	4.41498	0.0436431	0.0106866	0.162255	0.0861859
chr21	46546549	46546637	7423405	0	+	0.556818	(0.515,0.57]	chr21	757077	2	SS3_PROX	SS3_PROX:INTRON	DIP2A	ENSG00000160305.18	ENST00000417564.3:ENST00000651436.1:ENST00000400274.5:ENST00000457905.7:ENST00000466639.5:ENST00000435722.7:ENST00000480553.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	26	2	2.35125	3.383115	4.41498	0.0436431	0.0106866	0.162255	0.0861859
chr22	46271444	46271541	7533231	0	+	0.56701	(0.515,0.57]	chr22	770203	18	INTRON	INTRON	TTC38	ENSG00000075234.17	ENST00000417709.5:ENST00000381031.8:ENST00000421359.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	26	2	2.35125	3.383115	4.41498	0.0436431	0.0106866	0.162255	0.0861859
chr22	49455906	49456006	7600638	0	-	0.52	(0.515,0.57]	chr22	778566	143	INTRON	INTRON	MIR3667HG	ENSG00000188511.13	ENST00000414287.5:ENST00000416411.1	lncRNA	lncRNA	lncRNA	lncRNA	1	26	2	2.35125	3.383115	4.41498	0.0436431	0.0106866	0.162255	0.0861859
chr4	23191810	23191909	1930060	0	+	0.555556	(0.515,0.57]	chr4	194013	48	INTRON	INTRON	ENSG00000248837	ENSG00000248837.7	ENST00000663348.1	lncRNA	lncRNA	lncRNA	lncRNA	1	26	2	2.35125	3.383115	4.41498	0.0436431	0.0106866	0.162255	0.0861859
chr5	113009017	113009113	2453717	0	+	0.520833	(0.515,0.57]	chr5	235119	6	INTRON	INTRON	DCP2	ENSG00000172795.17	ENST00000515408.5:ENST00000513585.6:ENST00000389063.3:ENST00000674880.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	26	2	2.35125	3.383115	4.41498	0.0436431	0.0106866	0.162255	0.0861859
chr5	139581883	139581983	2500709	0	+	0.52	(0.515,0.57]	chr5	239026	191	INTRON	INTRON	UBE2D2	ENSG00000131508.16	ENST00000511725.5:ENST00000505007.5:ENST00000398733.8:ENST00000510470.1:ENST00000398734.8:ENST00000505548.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	26	2	2.35125	3.383115	4.41498	0.0436431	0.0106866	0.162255	0.0861859
chr6	156962757	156962856	3009018	0	+	0.555556	(0.515,0.57]	chr6	281124	190	INTRON	INTRON	ARID1B	ENSG00000049618.24	ENST00000346085.10:ENST00000636930.2:ENST00000647938.1:ENST00000350026.10:ENST00000674298.1:ENST00000674190.1:ENST00000414678.7:ENST00000638000.1:ENST00000319584.11:ENST00000452544.2:ENST00000637887.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	26	2	2.35125	3.383115	4.41498	0.0436431	0.0106866	0.162255	0.0861859
chrX	134472659	134472758	7724195	0	+	0.525253	(0.515,0.57]	chrX	790154	118	INTRON	INTRON	HPRT1	ENSG00000165704.15	ENST00000298556.8:ENST00000462974.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	26	2	2.35125	3.383115	4.41498	0.0436431	0.0106866	0.162255	0.0861859
chr11	46836335	46836435	4948667	0	-	0.23	[0,0.28]	chr11	463857	96	INTRON	INTRON	CKAP5	ENSG00000175216.15	ENST00000529230.6:ENST00000312055.9:ENST00000525248.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	48	2	2.00649	3.383065	4.75964	0.040391	0.0232081	0.161534	0.118148
chr5	134153532	134153632	2726115	0	-	0.44	(0.408,0.44]	chr5	256474	47	UTR3	UTR3:EXON_MRNA	SKP1	ENSG00000113558.19	ENST00000353411.11	protein_coding	protein_coding	protein_coding	protein_coding	4	58	2	1.58026	3.38281	5.18536	0.0444624	6.17381e-4	0.149888	0.0223951
chr11	68484482	68484582	4817570	0	+	0.26	[0,0.28]	chr11	448907	233	INTRON	INTRON	PPP6R3	ENSG00000110075.15	ENST00000530427.5:ENST00000528635.5:ENST00000529907.5:ENST00000533127.5:ENST00000534534.5:ENST00000529344.5:ENST00000524845.5:ENST00000393800.7:ENST00000265637.8:ENST00000524904.5:ENST00000393801.7:ENST00000265636.9:ENST00000529710.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	39	2	2.20927	3.382725	4.55618	0.0794763	0.0171034	0.19979	0.110899
chr17	32144026	32144126	6596834	0	+	0.26	[0,0.28]	chr17	641728	9	INTRON	INTRON	RHOT1	ENSG00000126858.19	ENST00000333942.10:ENST00000358365.7:ENST00000583994.5:ENST00000545287.7:ENST00000354266.7:ENST00000581031.5:ENST00000581094.5:ENST00000578205.5:ENST00000580976.1:ENST00000394692.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	39	2	2.20927	3.382725	4.55618	0.0794763	0.0171034	0.19979	0.110899
chr17	61824645	61824745	6808545	0	-	0.27	[0,0.28]	chr17	672605	155	INTRON	INTRON	BRIP1	ENSG00000136492.10	ENST00000259008.7:ENST00000682755.1:ENST00000682453.1:ENST00000683039.1:ENST00000682989.1:ENST00000682589.1:ENST00000683235.1:ENST00000682477.1:ENST00000684584.1:ENST00000577598.5:ENST00000682066.1:ENST00000584322.2:ENST00000683381.1:ENST00000579028.2:ENST00000682611.1:ENST00000683692.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	39	2	2.20927	3.382725	4.55618	0.0794763	0.0171034	0.19979	0.110899
chr22	20003972	20004072	7556698	0	-	0.27	[0,0.28]	chr22	772675	128	INTRON	INTRON	ARVCF	ENSG00000099889.14	ENST00000263207.8:ENST00000467828.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	39	2	2.20927	3.382725	4.55618	0.0794763	0.0171034	0.19979	0.110899
chr16	89359146	89359246	6542269	0	-	0.39	(0.378,0.408]	chr16	634215	155	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000647238.1:ENST00000644045.1:ENST00000643147.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	88	2	2.70141	3.382465	4.06352	0.00411614	5.51462e-5	0.0564981	0.00608953
chr2	169619908	169620007	906838	0	+	0.323232	(0.32,0.35]	chr2	100061	48	INTRON	INTRON	PPIG	ENSG00000138398.17	ENST00000678088.1:ENST00000677392.1:ENST00000433207.6:ENST00000679324.1:ENST00000414307.6:ENST00000676508.1:ENST00000260970.8:ENST00000678695.1:ENST00000409714.7:ENST00000530152.5:ENST00000677750.1:ENST00000678721.1:ENST00000462903.6:ENST00000676756.1:ENST00000679107.1:ENST00000678499.1:ENST00000678638.1:ENST00000448752.7:ENST00000417938.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	59	2	1.80487	3.3822900000000002	4.95971	0.0210603	0.00663522	0.122559	0.0703181
chr14	30959013	30959112	5857198	0	-	0.454545	(0.44,0.476]	chr14	556504	24	INTRON	INTRON	STRN3	ENSG00000196792.12	ENST00000355683.9:ENST00000357479.10:ENST00000555358.5:ENST00000555152.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	63	2	3.12799	3.3821849999999998	3.63638	0.0050635	4.74104e-4	0.0621733	0.0196816
chr16	69653035	69653135	6380887	0	+	0.28	[0,0.28]	chr16	613193	4	SS3_PROX	SS3_PROX:INTRON	NFAT5	ENSG00000102908.22	ENST00000426654.6:ENST00000349945.7:ENST00000354436.6:ENST00000627621.3:ENST00000650987.1:ENST00000567990.5:ENST00000567239.5:ENST00000393742.7:ENST00000565301.2:ENST00000566899.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	93	2	2.77716	3.3821649999999996	3.98717	0.022039	1.83224e-4	0.115395	0.0117706
chr10	124411089	124411185	4710760	0	-	0.385417	(0.378,0.408]	chr10	434728	18	INTRON	INTRON	OAT	ENSG00000065154.12	ENST00000539214.5:ENST00000368845.6:ENST00000476917.5:ENST00000490096.5:ENST00000492376.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	29	2	2.54849	3.38206	4.21563	0.0315429	0.0273196	0.136494	0.13151
chr22	19826367	19826467	7555343	0	-	0.38	(0.378,0.408]	chr22	772443	46	INTRON	INTRON	GNB1L	ENSG00000185838.14	ENST00000329517.11:ENST00000403325.5:ENST00000405009.5:ENST00000460402.5:ENST00000481086.1:ENST00000453108.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	29	2	2.54849	3.38206	4.21563	0.0315429	0.0273196	0.136494	0.13151
chr3	10251701	10251800	1364079	0	+	0.393939	(0.378,0.408]	chr3	143770	17	INTRON	INTRON	TATDN2	ENSG00000157014.11	ENST00000287652.8:ENST00000448281.7	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	2.54849	3.38206	4.21563	0.0315429	0.0273196	0.136494	0.13151
chr3	23849582	23849682	1388166	0	+	0.39	(0.378,0.408]	chr3	145385	377	INTRON	INTRON	UBE2E1	ENSG00000170142.12	ENST00000306627.8:ENST00000346855.7:ENST00000495141.5:ENST00000442670.5:ENST00000424381.5:ENST00000467766.5:ENST00000475680.5:ENST00000452012.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	29	2	2.54849	3.38206	4.21563	0.0315429	0.0273196	0.136494	0.13151
chr3	25782437	25782537	1642835	0	-	0.4	(0.378,0.408]	chr3	168691	3	SS5_PROX	SS5_PROX:INTRON	NGLY1	ENSG00000151092.18	ENST00000280700.10:ENST00000428257.5:ENST00000675217.1:ENST00000676225.1:ENST00000493324.5:ENST00000396649.7:ENST00000308710.9:ENST00000280699.13:ENST00000674841.1:ENST00000675234.1:ENST00000463611.2:ENST00000417874.6:ENST00000427041.1:ENST00000461491.5:ENST00000474611.1:ENST00000478991.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	29	2	2.54849	3.38206	4.21563	0.0315429	0.0273196	0.136494	0.13151
chr4	150377091	150377191	2265327	0	-	0.38	(0.378,0.408]	chr4	220639	228	INTRON	INTRON	LRBA	ENSG00000198589.14	ENST00000357115.9:ENST00000651943.2:ENST00000510413.5:ENST00000503716.5:ENST00000509835.5:ENST00000648823.1:ENST00000648626.1:ENST00000651695.1:ENST00000648878.1:ENST00000651035.1:ENST00000507224.5:ENST00000649874.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	29	2	2.54849	3.38206	4.21563	0.0315429	0.0273196	0.136494	0.13151
chr18	3006925	3007025	6945038	0	-	0.46	(0.44,0.476]	chr18	686840	242	INTRON	INTRON	LPIN2	ENSG00000101577.10	ENST00000261596.8:ENST00000677752.1	protein_coding	protein_coding	protein_coding	protein_coding	2	63	2	3.35227	3.382015	3.41176	0.0022005699999999998	0.00130987	0.0417893	0.0333932
chr11	63692764	63692864	4800026	0	+	0.3	(0.28,0.32]	chr11	444936	106	INTRON	INTRON	RTN3	ENSG00000133318.14	ENST00000341307.6:ENST00000356000.7:ENST00000542238.5:ENST00000538995.1:ENST00000339997.8:ENST00000540798.5:ENST00000537981.5:ENST00000377819.10:ENST00000536011.5:ENST00000543123.1:ENST00000543552.5:ENST00000545432.5:ENST00000338850.5:ENST00000354497.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	46	2	2.33771	3.3820050000000004	4.4263	0.0330296	0.0142701	0.133816	0.103838
chr2	188260331	188260431	1295124	0	-	0.3	(0.28,0.32]	chr2	135671	314	INTRON	INTRON	LINC01090	ENSG00000231689.3	ENST00000434418.2:ENST00000632331.1:ENST00000415357.1	lncRNA	lncRNA	lncRNA	lncRNA	3	53	2	1.6633	3.381995	5.10069	0.0522231	0.00610574	0.177274	0.0676501
chr19	47136301	47136400	7083923	0	+	0.50505	(0.476,0.515]	chr19	708741	3	INTRON	INTRON	SAE1	ENSG00000142230.13	ENST00000594144.5:ENST00000594526.5:ENST00000597808.5:ENST00000413379.7:ENST00000600706.5:ENST00000270225.12:ENST00000598840.5:ENST00000414294.6:ENST00000600753.1:ENST00000660039.1:ENST00000664120.1:ENST00000596995.1:ENST00000392776.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	49	2	1.58335	3.38187	5.18039	0.0640461	6.58744e-4	0.177882	0.0232396
chr15	101281982	101282082	6269899	0	-	0.34	(0.32,0.35]	chr15	597985	2	SS3_PROX	SS3_PROX:INTRON	SNRPA1	ENSG00000131876.18	ENST00000254193.11:ENST00000558036.5:ENST00000559309.5:ENST00000560307.5:ENST00000560433.5:ENST00000394082.8:ENST00000540017.6:ENST00000560496.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	75	2	3.18392	3.381855	3.57979	0.00379806	0.00118589	0.0562562	0.0315652
chr15	56948081	56948181	6032406	0	+	0.36	(0.35,0.378]	chr15	574663	266	INTRON	INTRON	TCF12	ENSG00000140262.18	ENST00000438423.6:ENST00000267811.9:ENST00000333725.10:ENST00000560190.5:ENST00000559609.5:ENST00000558908.5:ENST00000557843.5:ENST00000557947.5:ENST00000561152.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	110	2	2.71933	3.381665	4.044	9.31518e-4	1.3063e-4	0.0278746	0.0103941
chr7	140478134	140478227	3661623	0	-	0.354839	(0.35,0.378]	chr7	339951	1	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	MKRN1	ENSG00000133606.11	ENST00000255977.7:ENST00000475010.5:ENST00000495305.5:ENST00000474576.5:ENST00000480552.5:ENST00000496169.5:ENST00000443720.6:ENST00000471104.5:ENST00000467513.5:ENST00000494939.1:ENST00000498535.1:ENST00000473444.1:ENST00000475180.5:ENST00000481705.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	40	2	2.04358	3.3815549999999996	4.71953	0.0329533	0.0103314	0.145171	0.0850389
chr1	150474117	150474215	222807	0	+	0.408163	(0.378,0.408]	chr1	25115	9	UTR3	UTR3:EXON_MRNA	RPRD2	ENSG00000163125.16	ENST00000369068.5:ENST00000401000.8	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	2.26252	3.38154	4.50056	0.056222	0.015974	0.18407	0.101453
chr10	35518910	35519009	4426337	0	+	0.393939	(0.378,0.408]	chr10	407937	19	INTRON	INTRON	CCNY	ENSG00000108100.18	ENST00000374706.5:ENST00000493157.6:ENST00000374704.8:ENST00000265375.13:ENST00000339497.7:ENST00000492478.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	29	2	2.26252	3.38154	4.50056	0.056222	0.015974	0.18407	0.101453
chr16	72612185	72612285	6518787	0	-	0.38	(0.378,0.408]	chr16	631372	413	INTRON	INTRON	LINC01572	ENSG00000261008.8	ENST00000624829.4:ENST00000561611.2:ENST00000656218.1:ENST00000666555.2:ENST00000664155.1:ENST00000657725.1:ENST00000563770.5:ENST00000668081.1:ENST00000570152.2:ENST00000662171.1:ENST00000691892.1:ENST00000659470.1:ENST00000655530.1:ENST00000570035.5:ENST00000563823.6	lncRNA	lncRNA	lncRNA	lncRNA	1	29	2	2.26252	3.38154	4.50056	0.056222	0.015974	0.18407	0.101453
chr17	46129433	46129533	6784230	0	-	0.4	(0.378,0.408]	chr17	669216	82	INTRON	INTRON	KANSL1	ENSG00000120071.15	ENST00000574590.6:ENST00000572904.6:ENST00000432791.7:ENST00000575318.6:ENST00000638275.1:ENST00000262419.10:ENST00000648792.1:ENST00000639531.1:ENST00000639150.1:ENST00000639853.1:ENST00000571698.2:ENST00000639375.1:ENST00000638269.1:ENST00000576248.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	29	2	2.26252	3.38154	4.50056	0.056222	0.015974	0.18407	0.101453
chr7	105550486	105550586	3375877	0	+	0.4	(0.378,0.408]	chr7	316084	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	RINT1	ENSG00000135249.8	ENST00000257700.7:ENST00000497979.5:ENST00000474123.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	29	2	2.26252	3.38154	4.50056	0.056222	0.015974	0.18407	0.101453
chr8	21935900	21935999	3711080	0	+	0.393939	(0.378,0.408]	chr8	344395	139	INTRON	INTRON	XPO7	ENSG00000130227.17	ENST00000252512.14:ENST00000521303.5:ENST00000519769.5:ENST00000518017.1:ENST00000520754.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	29	2	2.26252	3.38154	4.50056	0.056222	0.015974	0.18407	0.101453
chr4	138207697	138207797	2245481	0	-	0.35	(0.32,0.35]	chr4	219484	221	INTRON	INTRON	SLC7A11	ENSG00000151012.13	ENST00000280612.9:ENST00000509248.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	13	408	2	3.06774	3.381475	3.69521	1.22929e-4	2.7246e-8	0.00997237	6.36859e-5
chr9	124914502	124914600	4349655	0	-	0.336735	(0.32,0.35]	chr9	399362	21	INTRON	INTRON	GOLGA1	ENSG00000136935.14	ENST00000373555.9:ENST00000475407.5:ENST00000485337.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	99	2	2.85974	3.38144	3.90314	0.00186579	3.02468e-4	0.0399675	0.0160895
chr1	23286989	23287089	399166	0	-	0.45	(0.44,0.476]	chr1	47822	58	EXON_LNCRNA	EXON_LNCRNA	LINC01355	ENSG00000261326.4	ENST00000655082.1:ENST00000666981.1	lncRNA	lncRNA	lncRNA	lncRNA	2	38	2	1.93084	3.38143	4.83202	0.0443175	0.00525002	0.162302	0.0633615
chr18	76829789	76829889	6932521	0	+	0.47	(0.44,0.476]	chr18	685619	50	INTRON	INTRON	ZNF236	ENSG00000130856.17	ENST00000320610.14:ENST00000543926.6:ENST00000253159.12	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	38	2	1.93084	3.38143	4.83202	0.0443175	0.00525002	0.162302	0.0633615
chr1	38016707	38016803	74307	0	+	0.354167	(0.35,0.378]	chr1	9596	4	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	UTP11	ENSG00000183520.12	ENST00000483182.5:ENST00000373014.5:ENST00000486563.1:ENST00000488453.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	40	2	1.90405	3.381375	4.8587	0.0482651	0.00695662	0.171852	0.0718189
chr6	39192255	39192349	3090429	0	-	0.393617	(0.378,0.408]	chr6	289157	1	INTRON	INTRON	KCNK5	ENSG00000164626.9	ENST00000359534.4	protein_coding	protein_coding	protein_coding	protein_coding	5	128	2	2.82558	3.3813500000000003	3.93712	3.09716e-4	1.09377e-4	0.0162047	0.00884858
chr20	62936495	62936595	7362556	0	-	0.44	(0.408,0.44]	chr20	751216	73	INTRON	INTRON	DIDO1	ENSG00000101191.17	ENST00000266070.8:ENST00000370371.8	protein_coding	protein_coding	protein_coding	protein_coding	11	287	2	3.35869	3.38126	3.40383	4.27917e-6	9.59951e-7	0.00151054	5.54959e-4
chr5	176925546	176925646	2776113	0	-	0.3	(0.28,0.32]	chr5	261526	59	INTRON	INTRON	UIMC1	ENSG00000087206.17	ENST00000377227.8:ENST00000511320.6:ENST00000506128.5:ENST00000512031.5:ENST00000510698.2:ENST00000503273.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	36	2	2.32871	3.381055	4.4334	0.0581621	0.0163355	0.167723	0.109464
chr5	140643141	140643214	2504357	0	+	0.465753	(0.44,0.476]	chr5	239402	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TMCO6	ENSG00000113119.13	ENST00000394671.8:ENST00000252100.6:ENST00000510336.5:ENST00000509605.5:ENST00000515265.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	41	2	1.9039	3.3810350000000002	4.85817	0.0501498	0.00223254	0.156383	0.0435144
chr19	870536	870636	7110511	0	-	0.53	(0.515,0.57]	chr19	714052	1	SS5_PROX	SS5_PROX:INTRON	MED16	ENSG00000175221.16	ENST00000395808.7:ENST00000312090.10:ENST00000325464.6:ENST00000607471.5:ENST00000621073.4:ENST00000606248.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	165	2	2.40535	3.38096	4.35657	4.25661e-4	2.49413e-7	0.0184548	2.66331e-4
chr7	12350875	12350973	3484880	0	-	0.326531	(0.32,0.35]	chr7	325854	46	INTRON	INTRON	VWDE	ENSG00000146530.15	ENST00000275358.8:ENST00000452576.6:ENST00000521169.5:ENST00000649524.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	201	2	2.82348	3.380855	3.93823	1.09224e-4	1.61123e-5	0.00884858	0.00322934
chr12	123155609	123155709	5443258	0	-	0.49	(0.476,0.515]	chr12	520744	15	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	MPHOSPH9	ENSG00000051825.15	ENST00000544217.1:ENST00000541603.6:ENST00000606320.6:ENST00000541076.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	38	2	1.99341	3.38084	4.76827	0.037389	0.00600704	0.155878	0.0674604
chr17	66419011	66419111	6663462	0	+	0.49	(0.476,0.515]	chr17	650326	548	INTRON	INTRON	PRKCA	ENSG00000154229.12	ENST00000413366.8:ENST00000578063.5:ENST00000284384.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	38	2	1.99341	3.38084	4.76827	0.037389	0.00600704	0.155878	0.0674604
chr6	7132157	7132257	2798607	0	+	0.48	(0.476,0.515]	chr6	263723	231	INTRON	INTRON	RREB1	ENSG00000124782.21	ENST00000379933.7:ENST00000491191.5:ENST00000471433.5:ENST00000379938.7:ENST00000467782.5:ENST00000349384.10:ENST00000334984.10:ENST00000475946.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	38	2	1.99341	3.38084	4.76827	0.037389	0.00600704	0.155878	0.0674604
chr12	108670115	108670214	5406158	0	-	0.414141	(0.408,0.44]	chr12	516004	76	INTRON	INTRON	CORO1C	ENSG00000110880.11	ENST00000261401.8:ENST00000420959.6:ENST00000541050.5:ENST00000549384.5:ENST00000421578.6:ENST00000550542.5:ENST00000549772.5:ENST00000552871.5:ENST00000547294.5:ENST00000550032.5:ENST00000551550.5:ENST00000546571.5:ENST00000551044.1:ENST00000547170.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	38	2	2.00768	3.3808300000000004	4.75398	0.035843	0.00703931	0.152216	0.0718189
chr16	12031031	12031131	6291863	0	+	0.42	(0.408,0.44]	chr16	602377	9	INTRON	INTRON	SNX29	ENSG00000048471.14	ENST00000566228.6:ENST00000569801.5:ENST00000564111.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	38	2	2.00768	3.3808300000000004	4.75398	0.035843	0.00703931	0.152216	0.0718189
chr3	136176512	136176612	1824041	0	-	0.42	(0.408,0.44]	chr3	183518	234	INTRON	INTRON	MSL2	ENSG00000174579.4	ENST00000309993.3:ENST00000434835.2:ENST00000481989.1:ENST00000491050.1:ENST00000473093.1	protein_coding	protein_coding	protein_coding	protein_coding	2	38	2	2.00768	3.3808300000000004	4.75398	0.035843	0.00703931	0.152216	0.0718189
chr5	142322989	142323089	2741225	0	-	0.41	(0.408,0.44]	chr5	258521	28	INTRON	INTRON	SPRY4	ENSG00000187678.10	ENST00000344120.4:ENST00000434127.3:ENST00000511815.1:ENST00000503582.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	38	2	2.00768	3.3808300000000004	4.75398	0.035843	0.00703931	0.152216	0.0718189
chr8	123260105	123260204	4041679	0	-	0.414141	(0.408,0.44]	chr8	368617	25	INTRON	INTRON	ZHX1-C8orf76:ZHX1	ENSG00000259305.6:ENSG00000165156.15	ENST00000357082.8:ENST00000622816.2:ENST00000297857.3:ENST00000395571.8:ENST00000517516.1:ENST00000522655.5:ENST00000522595.5:ENST00000524267.5:ENST00000480132.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	38	2	2.00768	3.3808300000000004	4.75398	0.035843	0.00703931	0.152216	0.0718189
chr16	15139253	15139353	6450848	0	-	0.38	(0.378,0.408]	chr16	621698	4	INTRON	INTRON	PKD1P6	ENSG00000250251.6	ENST00000343738.10	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	1	33	2	2.66785	3.38082	4.09379	0.023912	0.0224639	0.129075	0.11692
chr5	29105637	29105737	2332812	0	+	0.4	(0.378,0.408]	chr5	225153	3	INTRON	INTRON	LINC02109	ENSG00000259786.7	ENST00000658190.1	lncRNA	lncRNA	lncRNA	lncRNA	1	33	2	2.66785	3.38082	4.09379	0.023912	0.0224639	0.129075	0.11692
chr4	78880067	78880166	1982443	0	+	0.515152	(0.476,0.515]	chr4	198552	2	INTRON	INTRON	BMP2K	ENSG00000138756.19	ENST00000502613.3	protein_coding	protein_coding	protein_coding	protein_coding	2	64	2	3.19119	3.380795	3.5704	0.00325748	8.75056e-4	0.0524329	0.0270926
chr1	89871942	89872042	160035	0	+	0.42	(0.408,0.44]	chr1	17285	249	INTRON	INTRON	LRRC8D	ENSG00000171492.14	ENST00000525774.5:ENST00000337338.9:ENST00000394593.7:ENST00000532201.5:ENST00000414841.1:ENST00000527156.1:ENST00000441269.2	protein_coding	protein_coding	protein_coding	protein_coding	2	39	2	2.33431	3.38072	4.42713	0.0173083	0.0129219	0.104099	0.0990564
chr10	72215576	72215676	4644066	0	-	0.41	(0.408,0.44]	chr10	427297	4	SS5_PROX	SS5_PROX:INTRON	ASCC1	ENSG00000138303.18	ENST00000672957.1:ENST00000394919.5:ENST00000317168.11:ENST00000342444.8:ENST00000673599.1:ENST00000672774.1:ENST00000671788.1:ENST00000672940.1:ENST00000317126.8:ENST00000394915.7:ENST00000530461.5:ENST00000527593.5:ENST00000524829.5:ENST00000532011.5:ENST00000526751.5:ENST00000492502.2:ENST00000533958.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	39	2	2.33431	3.38072	4.42713	0.0173083	0.0129219	0.104099	0.0990564
chr17	27480562	27480662	6581007	0	+	0.48	(0.476,0.515]	chr17	639659	81	INTRON	INTRON	KSR1	ENSG00000141068.15	ENST00000644974.2:ENST00000579309.1:ENST00000583370.5:ENST00000398988.7:ENST00000268763.10:ENST00000509603.6:ENST00000582311.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	39	2	2.32001	3.380645	4.44128	0.0151924	0.0136217	0.101682	0.0994339
chr6	169713933	169714033	3267236	0	-	0.5	(0.476,0.515]	chr6	303289	10	INTRON	INTRON	PHF10	ENSG00000130024.15	ENST00000339209.9:ENST00000366780.8:ENST00000621772.4:ENST00000480008.1:ENST00000612128.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	39	2	2.32001	3.380645	4.44128	0.0151924	0.0136217	0.101682	0.0994339
chr16	22439734	22439834	6321964	0	+	0.41	(0.408,0.44]	chr16	605299	16	INTRON	INTRON	SMG1P1	ENSG00000237296.10	ENST00000446662.5:ENST00000381231.5:ENST00000309865.11:ENST00000691795.1:ENST00000308347.10:ENST00000687936.1:ENST00000691423.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	6	131	2	2.23161	3.380595	4.52958	0.00206564	7.38293e-6	0.04217	0.00205092
chr10	30339425	30339525	4587544	0	-	0.41	(0.408,0.44]	chr10	422975	20	INTRON	INTRON	MTPAP	ENSG00000107951.15	ENST00000263063.9:ENST00000488290.5:ENST00000417581.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	116	2	3.2225799999999998	3.380565	3.53855	2.79412e-4	8.35406e-5	0.0148832	0.00815123
chr1	150835879	150835979	552571	0	-	0.33	(0.32,0.35]	chr1	64981	2	SS5_PROX	SS5_PROX:INTRON	ARNT	ENSG00000143437.21	ENST00000358595.10:ENST00000471844.6:ENST00000354396.6:ENST00000515192.5:ENST00000505755.5:ENST00000468970.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	43	2	2.30476	3.380525	4.45629	0.0246089	0.0151817	0.12011	0.108535
chr12	119861784	119861884	5432118	0	-	0.34	(0.32,0.35]	chr12	519010	37	INTRON	INTRON	CIT	ENSG00000122966.17	ENST00000392521.7:ENST00000261833.11:ENST00000612548.4	protein_coding	protein_coding	protein_coding	protein_coding	2	43	2	2.30476	3.380525	4.45629	0.0246089	0.0151817	0.12011	0.108535
chr6	4056688	4056774	2790065	0	+	0.430233	(0.408,0.44]	chr6	263547	1	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PRPF4B	ENSG00000112739.17	ENST00000480058.5:ENST00000337659.11:ENST00000481109.5:ENST00000463634.6:ENST00000466185.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	136	2	2.95007	3.3805	3.81093	3.86745e-4	9.03544e-6	0.0182867	0.00216015
chr6	41788731	41788831	2864505	0	+	0.61	(0.57,1]	chr6	270894	1	SS3_PROX	SS3_PROX:INTRON	TOMM6	ENSG00000214736.8	ENST00000398884.7:ENST00000398881.4	protein_coding	protein_coding	protein_coding	protein_coding	3	49	2	3.31859	3.38026	3.44193	0.00137292	4.86135e-5	0.0340241	0.00605189
chr19	10791050	10791148	7014514	0	+	0.397959	(0.378,0.408]	chr19	696979	40	INTRON	INTRON	DNM2	ENSG00000079805.19	ENST00000683738.1:ENST00000682285.1:ENST00000682524.1:ENST00000355667.11:ENST00000389253.9:ENST00000585892.5:ENST00000359692.10:ENST00000408974.8:ENST00000591701.5:ENST00000587485.1:ENST00000587830.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	39	2	2.17608	3.380175	4.58427	0.0218783	0.0128325	0.123836	0.0926667
chr2	171037067	171037167	1262846	0	-	0.4	(0.378,0.408]	chr2	133843	83	INTRON	INTRON	TLK1	ENSG00000198586.14	ENST00000431350.7:ENST00000360843.7:ENST00000359766.7:ENST00000521943.5:ENST00000434911.6:ENST00000409443.6:ENST00000413010.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	39	2	2.17608	3.380175	4.58427	0.0218783	0.0128325	0.123836	0.0926667
chr3	23855977	23856077	1388230	0	+	0.39	(0.378,0.408]	chr3	145385	441	INTRON	INTRON	UBE2E1	ENSG00000170142.12	ENST00000306627.8:ENST00000346855.7:ENST00000495141.5:ENST00000442670.5:ENST00000424381.5:ENST00000467766.5:ENST00000475680.5:ENST00000452012.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	39	2	2.17608	3.380175	4.58427	0.0218783	0.0128325	0.123836	0.0926667
chrX	70308577	70308677	7675495	0	+	0.38	(0.378,0.408]	chrX	785595	58	INTRON	INTRON	KIF4A	ENSG00000090889.12	ENST00000374403.4	protein_coding	protein_coding	protein_coding	protein_coding	2	39	2	2.17608	3.380175	4.58427	0.0218783	0.0128325	0.123836	0.0926667
chr1	214604347	214604446	313545	0	+	0.464646	(0.44,0.476]	chr1	36068	3	INTRON	INTRON	CENPF	ENSG00000117724.14	ENST00000366955.8:ENST00000464322.5:ENST00000495259.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	31	2	2.5364	3.380165	4.22393	0.0309324	0.0162322	0.13151	0.109464
chr12	71879271	71879371	5169595	0	+	0.45	(0.44,0.476]	chr12	489725	59	INTRON	INTRON	TBC1D15	ENSG00000121749.16	ENST00000482439.6:ENST00000550746.5:ENST00000485960.7:ENST00000462788.6:ENST00000319106.12:ENST00000491063.5:ENST00000472611.6:ENST00000549402.5:ENST00000474468.5:ENST00000498482.5:ENST00000468049.2:ENST00000546932.5:ENST00000460818.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	31	2	2.5364	3.380165	4.22393	0.0309324	0.0162322	0.13151	0.109464
chr12	120242815	120242915	5433671	0	-	0.47	(0.44,0.476]	chr12	519462	153	INTRON	INTRON	PXN	ENSG00000089159.17	ENST00000267257.11:ENST00000228307.11:ENST00000424649.6:ENST00000637617.2:ENST00000458477.6:ENST00000323871.9:ENST00000547983.5:ENST00000551327.5:ENST00000440827.3:ENST00000547746.1:ENST00000550205.1:ENST00000547772.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	31	2	2.5364	3.380165	4.22393	0.0309324	0.0162322	0.13151	0.109464
chr14	27532838	27532938	5848180	0	-	0.46	(0.44,0.476]	chr14	556260	2103	INTRON	INTRON	ENSG00000258932	ENSG00000258932.5	ENST00000553392.5:ENST00000554904.5:ENST00000556890.1:ENST00000555797.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	1	31	2	2.5364	3.380165	4.22393	0.0309324	0.0162322	0.13151	0.109464
chr16	28385967	28386067	6468537	0	-	0.47	(0.44,0.476]	chr16	624628	21	INTRON	INTRON	EIF3CL	ENSG00000205609.13	ENST00000398944.7:ENST00000380876.5	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	2.5364	3.380165	4.22393	0.0309324	0.0162322	0.13151	0.109464
chr16	30765830	30765914	6339301	0	+	0.464286	(0.44,0.476]	chr16	607936	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RNF40	ENSG00000103549.22	ENST00000324685.11:ENST00000357890.9:ENST00000563683.5:ENST00000565995.5:ENST00000493683.5:ENST00000566703.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	31	2	2.5364	3.380165	4.22393	0.0309324	0.0162322	0.13151	0.109464
chr17	62025459	62025558	6810474	0	-	0.454545	(0.44,0.476]	chr17	672920	139	INTRON	INTRON	MED13	ENSG00000108510.10	ENST00000397786.7:ENST00000583958.1	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	2.5364	3.380165	4.22393	0.0309324	0.0162322	0.13151	0.109464
chr3	52106099	52106199	1698030	0	-	0.47	(0.44,0.476]	chr3	174579	90	INTRON	INTRON	POC1A	ENSG00000164087.8	ENST00000296484.7:ENST00000394970.6:ENST00000474012.1	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	2.5364	3.380165	4.22393	0.0309324	0.0162322	0.13151	0.109464
chr9	136808925	136809024	4221752	0	+	0.444444	(0.44,0.476]	chr9	387668	2	INTRON	INTRON	RABL6	ENSG00000196642.19	ENST00000371671.9:ENST00000311502.12:ENST00000484471.6:ENST00000371663.10:ENST00000357466.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	31	2	2.5364	3.380165	4.22393	0.0309324	0.0162322	0.13151	0.109464
chr16	24736378	24736478	6329280	0	+	0.32	(0.28,0.32]	chr16	605933	57	INTRON	INTRON	TNRC6A	ENSG00000090905.19	ENST00000566108.2:ENST00000395799.8:ENST00000315183.11:ENST00000562829.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	53	2	1.71442	3.3801050000000004	5.04579	0.0454351	0.00714672	0.164236	0.0723634
chr20	38074810	38074909	7269296	0	+	0.232323	[0,0.28]	chr20	738717	43	INTRON	INTRON	RPRD1B	ENSG00000101413.12	ENST00000462548.6:ENST00000373433.9:ENST00000449186.2:ENST00000618318.1:ENST00000614670.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	89	2	3.24659	3.3800999999999997	3.51361	0.00570201	0.00142208	0.0656459	0.0346633
chrX	24075162	24075258	7630947	0	+	0.375	(0.35,0.378]	chrX	781493	14	INTRON	INTRON	EIF2S3	ENSG00000130741.11	ENST00000253039.9:ENST00000457332.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	21	555	2	3.20729	3.38009	3.55289	7.26277e-7	1.68385e-7	5.13356e-4	1.88354e-4
chr13	49520003	49520100	5490617	0	+	0.42268	(0.408,0.44]	chr13	525950	13	INTRON	INTRON	PHF11	ENSG00000136147.18	ENST00000482487.5:ENST00000378319.8:ENST00000467763.5:ENST00000476953.6:ENST00000426879.5:ENST00000496612.5:ENST00000357596.7:ENST00000465045.5:ENST00000442195.5:ENST00000488958.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	32	2	2.6542	3.38007	4.10594	0.0227514	0.0219367	0.123836	0.117618
chr19	10359990	10360084	7135693	0	-	0.425532	(0.408,0.44]	chr19	719461	3	INTRON	INTRON	TYK2	ENSG00000105397.14	ENST00000264818.10:ENST00000525621.6:ENST00000524462.5:ENST00000529370.5:ENST00000533334.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	32	2	2.6542	3.38007	4.10594	0.0227514	0.0219367	0.123836	0.117618
chr19	46378848	46378946	7081638	0	+	0.418367	(0.408,0.44]	chr19	708540	19	INTRON	INTRON	PPP5C	ENSG00000011485.15	ENST00000012443.9:ENST00000478046.5:ENST00000391919.1:ENST00000527193.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	32	2	2.6542	3.38007	4.10594	0.0227514	0.0219367	0.123836	0.117618
chr5	40834062	40834155	2611262	0	-	0.430108	(0.408,0.44]	chr5	248282	3	UTR3	UTR3:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPL37	ENSG00000145592.14	ENST00000274242.10:ENST00000509877.5:ENST00000507642.5:ENST00000504562.1:ENST00000508493.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	32	2	2.6542	3.38007	4.10594	0.0227514	0.0219367	0.123836	0.117618
chr7	23510808	23510907	3503739	0	-	0.262626	[0,0.28]	chr7	326946	29	INTRON	INTRON	TRA2A	ENSG00000164548.12	ENST00000297071.9:ENST00000392502.8:ENST00000538367.6:ENST00000621813.4:ENST00000494255.5:ENST00000474586.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	58	2	1.75741	3.38002	5.00263	0.0424454	0.013055	0.161763	0.093385
chr1	32085293	32085393	63270	0	+	0.34	(0.32,0.35]	chr1	8035	76	INTRON	INTRON	TMEM39B	ENSG00000121775.18	ENST00000487305.5:ENST00000438825.5:ENST00000336294.10:ENST00000441402.5:ENST00000472503.5:ENST00000468135.5:ENST00000466321.5:ENST00000476968.5:ENST00000498613.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	31	2	2.48693	3.379965	4.273	0.0368357	0.0338094	0.146709	0.138959
chr11	46745976	46746076	4947706	0	-	0.34	(0.32,0.35]	chr11	463626	10	INTRON	INTRON	CKAP5	ENSG00000175216.15	ENST00000529230.6:ENST00000312055.9:ENST00000354558.7:ENST00000533413.5:ENST00000525896.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	31	2	2.48693	3.379965	4.273	0.0368357	0.0338094	0.146709	0.138959
chr12	108681488	108681588	5406274	0	-	0.35	(0.32,0.35]	chr12	516011	27	INTRON	INTRON	CORO1C	ENSG00000110880.11	ENST00000261401.8:ENST00000420959.6:ENST00000541050.5:ENST00000549384.5:ENST00000421578.6:ENST00000550542.5:ENST00000549772.5:ENST00000552871.5:ENST00000547294.5:ENST00000550032.5:ENST00000551550.5:ENST00000546571.5:ENST00000551044.1:ENST00000547170.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	31	2	2.48693	3.379965	4.273	0.0368357	0.0338094	0.146709	0.138959
chr12	110316402	110316501	5226454	0	+	0.343434	(0.32,0.35]	chr12	495250	193	INTRON	INTRON	ATP2A2	ENSG00000174437.18	ENST00000308664.10:ENST00000539276.7:ENST00000377685.9:ENST00000548169.2:ENST00000550248.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	31	2	2.48693	3.379965	4.273	0.0368357	0.0338094	0.146709	0.138959
chr12	120163659	120163759	5432929	0	-	0.34	(0.32,0.35]	chr12	519255	4	SS3_PROX	SS3_PROX:INTRON	GCN1	ENSG00000089154.11	ENST00000300648.7	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	2.48693	3.379965	4.273	0.0368357	0.0338094	0.146709	0.138959
chr22	27883187	27883287	7565498	0	-	0.35	(0.32,0.35]	chr22	774104	90	INTRON	INTRON	PITPNB	ENSG00000180957.19	ENST00000335272.10:ENST00000320996.14:ENST00000634017.1:ENST00000477861.1:ENST00000415296.5:ENST00000436663.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	31	2	2.48693	3.379965	4.273	0.0368357	0.0338094	0.146709	0.138959
chr16	81510690	81510790	6405658	0	+	0.4	(0.378,0.408]	chr16	615031	148	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6	protein_coding	protein_coding	protein_coding	protein_coding	5	123	2	2.60805	3.3797949999999997	4.15154	9.04599e-4	3.36054e-5	0.0278365	0.00463632
chr1	246880298	246880398	681423	0	-	0.58	(0.57,1]	chr1	79929	26	INTRON	INTRON	AHCTF1	ENSG00000153207.16	ENST00000648844.2:ENST00000326225.3:ENST00000366508.5:ENST00000470300.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	46	2	2.9315	3.3797550000000003	3.82801	9.1984e-4	9.41714e-5	0.0278396	0.00813008
chr20	58676389	58676487	7290440	0	+	0.581633	(0.57,1]	chr20	741764	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	STX16	ENSG00000124222.22	ENST00000361830.7:ENST00000355957.9:ENST00000371141.8:ENST00000359617.8:ENST00000490700.5:ENST00000371132.8:ENST00000358029.8:ENST00000438253.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	46	2	2.9315	3.3797550000000003	3.82801	9.1984e-4	9.41714e-5	0.0278396	0.00813008
chr7	105541855	105541955	3375783	0	+	0.24	[0,0.28]	chr7	316055	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RINT1	ENSG00000135249.8	ENST00000467392.5:ENST00000482041.5:ENST00000493041.5:ENST00000257700.7:ENST00000497979.5:ENST00000477285.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	205	2	3.02647	3.37974	3.73301	0.00202496	7.61797e-6	0.04086	0.00197283
chr16	22531775	22531869	6322943	0	+	0.478723	(0.476,0.515]	chr16	605503	4	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	NPIPB5	ENSG00000243716.11	ENST00000415654.5:ENST00000415833.6:ENST00000424340.6:ENST00000521555.6:ENST00000517539.5:ENST00000541664.5:ENST00000528249.5:ENST00000543997.1:ENST00000539604.5:ENST00000621622.5:ENST00000442450.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	30	2	2.23335	3.3796749999999998	4.526	0.0634557	0.00699701	0.177047	0.0754576
chr2	15439062	15439162	1071925	0	-	0.51	(0.476,0.515]	chr2	114368	109	INTRON	INTRON	NBAS	ENSG00000151779.13	ENST00000281513.10	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	2.23335	3.3796749999999998	4.526	0.0634557	0.00699701	0.177047	0.0754576
chr5	176995618	176995718	2776827	0	-	0.49	(0.476,0.515]	chr5	261585	126	INTRON	INTRON	UIMC1	ENSG00000087206.17	ENST00000377227.8:ENST00000511320.6:ENST00000506128.5:ENST00000512031.5:ENST00000509236.5:ENST00000417486.6:ENST00000515488.1:ENST00000507513.1:ENST00000428382.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	30	2	2.23335	3.3796749999999998	4.526	0.0634557	0.00699701	0.177047	0.0754576
chr8	230703	230803	3883337	0	-	0.5	(0.476,0.515]	chr8	357296	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	RPL23AP53	ENSG00000223508.5	ENST00000606975.1:ENST00000606507.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	3	49	2	1.63838	3.37955	5.12072	0.0555021	8.42139e-4	0.165463	0.0263691
chr1	175981469	175981568	589436	0	-	0.333333	(0.32,0.35]	chr1	70872	131	INTRON	INTRON	COP1	ENSG00000143207.21	ENST00000367669.8:ENST00000367667.5:ENST00000461830.6:ENST00000367666.5:ENST00000649803.1:ENST00000308769.12	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	31	2	2.21917	3.379525	4.53988	0.0641245	0.0202178	0.199279	0.109913
chr10	116909613	116909711	4699531	0	-	0.346939	(0.32,0.35]	chr10	433622	25	INTRON	INTRON	SHTN1	ENSG00000187164.20	ENST00000355371.9:ENST00000615301.4:ENST00000260777.14:ENST00000497044.5:ENST00000392901.10:ENST00000392903.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	31	2	2.21917	3.379525	4.53988	0.0641245	0.0202178	0.199279	0.109913
chr12	48689650	48689749	5319289	0	-	0.323232	(0.32,0.35]	chr12	506382	13	UTR3	UTR3:EXON_MRNA	CCNT1	ENSG00000129315.11	ENST00000618666.4:ENST00000261900.8	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	2.21917	3.379525	4.53988	0.0641245	0.0202178	0.199279	0.109913
chr13	28284238	28284336	5462306	0	+	0.346939	(0.32,0.35]	chr13	523331	25	INTRON	INTRON	PAN3	ENSG00000152520.14	ENST00000380958.8:ENST00000399613.1	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	2.21917	3.379525	4.53988	0.0641245	0.0202178	0.199279	0.109913
chr15	49150549	49150649	6167778	0	-	0.35	(0.32,0.35]	chr15	587899	51	INTRON	INTRON	COPS2	ENSG00000166200.15	ENST00000388901.10:ENST00000299259.10:ENST00000542928.5:ENST00000558843.5:ENST00000561248.1:ENST00000558545.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	31	2	2.21917	3.379525	4.53988	0.0641245	0.0202178	0.199279	0.109913
chr16	68051313	68051410	6369856	0	+	0.329897	(0.32,0.35]	chr16	612089	14	INTRON	INTRON	DUS2	ENSG00000167264.18	ENST00000571081.6:ENST00000570709.6:ENST00000575677.5:ENST00000576994.5:ENST00000566306.5:ENST00000358896.10:ENST00000564975.5:ENST00000568099.6:ENST00000565263.6:ENST00000567100.5:ENST00000432752.5:ENST00000562246.2:ENST00000561965.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	31	2	2.21917	3.379525	4.53988	0.0641245	0.0202178	0.199279	0.109913
chr3	49771291	49771391	1694731	0	-	0.34	(0.32,0.35]	chr3	173818	225	INTRON	INTRON	IP6K1	ENSG00000176095.12	ENST00000321599.9:ENST00000395238.5:ENST00000613416.4:ENST00000468463.5:ENST00000460540.1:ENST00000498149.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	31	2	2.21917	3.379525	4.53988	0.0641245	0.0202178	0.199279	0.109913
chr4	55538605	55538704	2149826	0	-	0.333333	(0.32,0.35]	chr4	211545	282	INTRON	INTRON	CLOCK	ENSG00000134852.15	ENST00000513440.6:ENST00000381322.5:ENST00000435527.6:ENST00000506923.5:ENST00000509151.5:ENST00000513033.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	31	2	2.21917	3.379525	4.53988	0.0641245	0.0202178	0.199279	0.109913
chr9	7033989	7034088	4102941	0	+	0.333333	(0.32,0.35]	chr9	373762	177	INTRON	INTRON	KDM4C	ENSG00000107077.19	ENST00000536108.5:ENST00000381306.7:ENST00000381309.8:ENST00000543771.5:ENST00000428870.6:ENST00000420847.2	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	2.21917	3.379525	4.53988	0.0641245	0.0202178	0.199279	0.109913
chr9	77195953	77196053	4145100	0	+	0.33	(0.32,0.35]	chr9	377740	178	INTRON	INTRON	VPS13A	ENSG00000197969.14	ENST00000376636.7:ENST00000360280.8:ENST00000643348.1:ENST00000645632.1	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	2.21917	3.379525	4.53988	0.0641245	0.0202178	0.199279	0.109913
chr12	67286539	67286639	5160672	0	+	0.29	(0.28,0.32]	chr12	488472	41	INTRON	INTRON	CAND1	ENSG00000111530.13	ENST00000545606.6:ENST00000539434.1:ENST00000540525.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	44	2	2.0243	3.3795200000000003	4.73474	0.0364967	0.0162835	0.153759	0.101453
chr6	132797521	132797621	3222819	0	-	0.53	(0.515,0.57]	chr6	299656	4	SS3_PROX	SS3_PROX:INTRON	SLC18B1	ENSG00000146409.12	ENST00000275227.9:ENST00000647932.1:ENST00000650278.1:ENST00000650136.1:ENST00000650298.1:ENST00000367918.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	59	2	2.68833	3.379505	4.07068	0.0184931	3.78716e-5	0.108861	0.00493296
chr1	100399523	100399623	173100	0	+	0.21	[0,0.28]	chr1	18824	83	INTRON	INTRON	CDC14A	ENSG00000079335.20	ENST00000646665.1:ENST00000644844.1:ENST00000635056.2:ENST00000647005.1:ENST00000647203.1:ENST00000644676.1:ENST00000361544.11:ENST00000370124.8:ENST00000336454.5:ENST00000644813.1:ENST00000455467.6:ENST00000646563.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	35	2	2.29142	3.37934	4.46726	0.0592143	0.0427997	0.189982	0.148082
chr1	202331656	202331745	619748	0	-	0.202247	[0,0.28]	chr1	73490	1	UTR3	UTR3:EXON_MRNA	UBE2T	ENSG00000077152.11	ENST00000487227.6:ENST00000646595.1:ENST00000646651.1:ENST00000643045.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	35	2	2.29142	3.37934	4.46726	0.0592143	0.0427997	0.189982	0.148082
chr10	26668146	26668226	4583043	0	-	0.15	[0,0.28]	chr10	422287	1	SS5_PROX	SS5_PROX:INTRON	SELENOOLP	ENSG00000227932.2	ENST00000446557.1:ENST00000636744.1	transcribed_unitary_pseudogene	processed_transcript	transcribed_unitary_pseudogene	processed_transcript:transcribed_unitary_pseudogene	1	35	2	2.29142	3.37934	4.46726	0.0592143	0.0427997	0.189982	0.148082
chr19	21409289	21409387	7040946	0	+	0.244898	[0,0.28]	chr19	702032	6	INTRON	INTRON	ZNF493	ENSG00000196268.12	ENST00000596302.5:ENST00000392288.7:ENST00000355504.4:ENST00000594390.5:ENST00000598152.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	35	2	2.29142	3.37934	4.46726	0.0592143	0.0427997	0.189982	0.148082
chr5	104106702	104106802	2441482	0	+	0.21	[0,0.28]	chr5	234410	14	INTRON	INTRON	LINC02163	ENSG00000251026.2	ENST00000662211.1:ENST00000666145.1	lncRNA	lncRNA	lncRNA	lncRNA	1	35	2	2.29142	3.37934	4.46726	0.0592143	0.0427997	0.189982	0.148082
chr6	140873804	140873904	3240887	0	-	0.23	[0,0.28]	chr6	301060	76	INTRON	INTRON	ENSG00000234147	ENSG00000234147.3	ENST00000650553.2:ENST00000692940.1:ENST00000683641.1:ENST00000682196.1:ENST00000684320.1:ENST00000683889.1:ENST00000683062.1:ENST00000682608.1:ENST00000455011.2:ENST00000682812.1:ENST00000683340.1:ENST00000683841.1:ENST00000683589.1:ENST00000684268.1:ENST00000683480.1	lncRNA	lncRNA	lncRNA	lncRNA	1	35	2	2.29142	3.37934	4.46726	0.0592143	0.0427997	0.189982	0.148082
chr7	4727244	4727344	3270365	0	+	0.27	[0,0.28]	chr7	303884	440	INTRON	INTRON	FOXK1	ENSG00000164916.11	ENST00000328914.5	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	2.29142	3.37934	4.46726	0.0592143	0.0427997	0.189982	0.148082
chr7	102369458	102369557	3371129	0	+	0.262626	[0,0.28]	chr7	315430	30	INTRON	INTRON	PRKRIP1:ENSG00000239969	ENSG00000128563.13:ENSG00000239969.6	ENST00000477886.5:ENST00000469763.5:ENST00000482549.5:ENST00000496391.5:ENST00000484974.5:ENST00000492837.1:ENST00000482465.5	protein_coding	protein_coding	protein_coding:transcribed_unprocessed_pseudogene	protein_coding:processed_transcript	1	35	2	2.29142	3.37934	4.46726	0.0592143	0.0427997	0.189982	0.148082
chr9	77385289	77385387	4147085	0	+	0.27551	[0,0.28]	chr9	378117	2	INTRON	INTRON	VPS13A	ENSG00000197969.14	ENST00000376636.7:ENST00000360280.8	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	2.29142	3.37934	4.46726	0.0592143	0.0427997	0.189982	0.148082
chrX	111700145	111700245	7702208	0	+	0.28	[0,0.28]	chrX	788221	101	INTRON	INTRON	ALG13	ENSG00000101901.12	ENST00000487141.5:ENST00000394780.8:ENST00000251943.8:ENST00000610588.4:ENST00000621367.4:ENST00000622997.3:ENST00000624161.3:ENST00000636363.1:ENST00000624881.3:ENST00000495283.5:ENST00000486353.5:ENST00000623144.3:ENST00000470971.5:ENST00000623148.3:ENST00000471924.5:ENST00000436609.5:ENST00000470704.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	35	2	2.29142	3.37934	4.46726	0.0592143	0.0427997	0.189982	0.148082
chr6	159731781	159731880	3022431	0	+	0.343434	(0.32,0.35]	chr6	281890	37	INTRON	INTRON	WTAP	ENSG00000146457.16	ENST00000358372.8:ENST00000650096.1:ENST00000614346.4:ENST00000621533.5:ENST00000494513.1:ENST00000631126.2:ENST00000337387.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	42	2	2.13945	3.3791700000000002	4.61889	0.0254517	0.0166646	0.133676	0.102621
chr13	100241596	100241696	5529074	0	+	0.42	(0.408,0.44]	chr13	528508	42	INTRON	INTRON	PCCA	ENSG00000175198.17	ENST00000376286.8:ENST00000376279.7:ENST00000376285.6:ENST00000647303.1:ENST00000637657.1:ENST00000636366.1:ENST00000636475.1:ENST00000636420.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	38	2	2.07919	3.3790649999999998	4.67894	0.0291499	0.0087648	0.14147	0.0788605
chr15	64546346	64546446	6044947	0	+	0.44	(0.408,0.44]	chr15	575696	434	INTRON	INTRON	ZNF609	ENSG00000180357.10	ENST00000326648.5:ENST00000558680.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	38	2	2.07919	3.3790649999999998	4.67894	0.0291499	0.0087648	0.14147	0.0788605
chr6	87218595	87218663	2913894	0	+	0.411765	(0.408,0.44]	chr6	275304	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	ZNF292	ENSG00000188994.13	ENST00000369577.8:ENST00000369578.6:ENST00000518845.1:ENST00000339907.8:ENST00000496806.2:ENST00000524067.5:ENST00000485016.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	38	2	2.07919	3.3790649999999998	4.67894	0.0291499	0.0087648	0.14147	0.0788605
chr8	73867868	73867968	3972150	0	-	0.41	(0.408,0.44]	chr8	364247	370	INTRON	INTRON	ENSG00000258677:UBE2W	ENSG00000258677.2:ENSG00000104343.21	ENST00000358757.5:ENST00000602593.6:ENST00000517608.5:ENST00000650817.1:ENST00000422906.6:ENST00000419880.7:ENST00000651945.1:ENST00000519277.5:ENST00000519255.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	38	2	2.07919	3.3790649999999998	4.67894	0.0291499	0.0087648	0.14147	0.0788605
chr21	37091726	37091826	7405016	0	+	0.5	(0.476,0.515]	chr21	754559	1	SS5_PROX	SS5_PROX:INTRON	TTC3	ENSG00000182670.14	ENST00000492275.6:ENST00000418766.6:ENST00000485402.5:ENST00000450533.6:ENST00000438055.5:ENST00000696812.1:ENST00000696811.1:ENST00000463216.6:ENST00000481605.6:ENST00000540756.5:ENST00000494243.5:ENST00000399010.5:ENST00000411496.2:ENST00000399017.6:ENST00000484047.5:ENST00000354749.6:ENST00000479930.5:ENST00000460328.5:ENST00000491952.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	38	2	2.06491	3.379055	4.6932	0.0304733	0.00753088	0.143385	0.074841
chr4	717332	717432	1907903	0	+	0.48	(0.476,0.515]	chr4	191202	110	INTRON	INTRON	PCGF3	ENSG00000185619.18	ENST00000419774.5:ENST00000362003.9:ENST00000475288.5:ENST00000470161.6:ENST00000427463.5:ENST00000482726.5:ENST00000400151.6:ENST00000430644.5:ENST00000484141.5:ENST00000440452.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	38	2	2.06491	3.379055	4.6932	0.0304733	0.00753088	0.143385	0.074841
chrX	40720677	40720777	7806630	0	-	0.5	(0.476,0.515]	chrX	796012	56	INTRON	INTRON	MED14	ENSG00000180182.11	ENST00000324817.6:ENST00000482034.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	38	2	2.06491	3.379055	4.6932	0.0304733	0.00753088	0.143385	0.074841
chr3	6608141	6608241	1357325	0	+	0.37	(0.35,0.378]	chr3	142522	237	INTRON	INTRON	ENSG00000189229	ENSG00000189229.12	ENST00000433639.1:ENST00000655754.1:ENST00000658468.1:ENST00000669512.1:ENST00000667028.1:ENST00000655541.1:ENST00000668643.1:ENST00000671568.1:ENST00000671036.1:ENST00000669798.1:ENST00000655753.1:ENST00000655856.1:ENST00000658398.1:ENST00000661518.1:ENST00000661279.1:ENST00000655495.1:ENST00000663041.1:ENST00000659827.1:ENST00000667716.1:ENST00000668416.1:ENST00000658133.1:ENST00000342990.4:ENST00000660054.1:ENST00000671370.1	lncRNA	lncRNA	lncRNA	lncRNA	2	44	2	1.93432	3.3790449999999996	4.82377	0.0481438	0.00325499	0.153019	0.0524329
chr9	32988629	32988723	4242643	0	-	0.382979	(0.378,0.408]	chr9	389980	1	INTRON	INTRON	APTX	ENSG00000137074.20	ENST00000672846.1:ENST00000672519.1:ENST00000672244.1:ENST00000673416.1:ENST00000673360.1:ENST00000379825.7:ENST00000379817.7:ENST00000397172.8:ENST00000494649.5:ENST00000673211.1:ENST00000672615.1:ENST00000673485.1:ENST00000672476.1:ENST00000673171.1:ENST00000672152.1:ENST00000436040.7:ENST00000472896.6:ENST00000465003.6:ENST00000479656.6:ENST00000673487.1:ENST00000467331.6:ENST00000482687.6:ENST00000483148.6:ENST00000672438.1:ENST00000485479.6:ENST00000673598.1:ENST00000460940.6:ENST00000309615.8:ENST00000379819.6:ENST00000672286.1:ENST00000673248.1:ENST00000474658.7:ENST00000495360.6:ENST00000672281.1:ENST00000476858.6:ENST00000672535.1:ENST00000463596.6:ENST00000379813.7:ENST00000468275.6:ENST00000477119.2:ENST00000671912.1:ENST00000464632.6:ENST00000478279.6:ENST00000480031.6:ENST00000460945.6:ENST00000494973.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	119	2	2.64921	3.379025	4.10884	4.93004e-4	8.2664e-5	0.0200992	0.00812487
chr5	79678879	79678978	2399409	0	+	0.424242	(0.408,0.44]	chr5	231751	95	INTRON	INTRON	TENT2	ENSG00000164329.14	ENST00000423041.6:ENST00000504233.5:ENST00000453514.6:ENST00000428308.6:ENST00000296783.7:ENST00000513735.5:ENST00000515298.5:ENST00000510721.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	33	2	2.78122	3.379005	3.97679	0.0299485	0.015812	0.142135	0.101453
chr9	130707090	130707189	4213851	0	+	0.414141	(0.408,0.44]	chr9	386421	4	UTR3	UTR3:EXON_MRNA	EXOSC2	ENSG00000130713.17	ENST00000691284.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	1	33	2	2.78122	3.379005	3.97679	0.0299485	0.015812	0.142135	0.101453
chr1	65013084	65013184	475019	0	-	0.48	(0.476,0.515]	chr1	57235	176	INTRON	INTRON	JAK1	ENSG00000162434.13	ENST00000672434.1:ENST00000671954.1:ENST00000673502.1:ENST00000672751.1:ENST00000672099.1	protein_coding	protein_coding	protein_coding	protein_coding	2	38	2	1.91817	3.378895	4.83962	0.0459211	0.00480934	0.164984	0.0602209
chr11	28116384	28116484	4752234	0	+	0.29	(0.28,0.32]	chr11	440072	24	INTRON	INTRON	METTL15	ENSG00000169519.21	ENST00000406787.7:ENST00000403099.5:ENST00000451385.6:ENST00000407364.8:ENST00000532947.2:ENST00000634627.1:ENST00000634973.1:ENST00000303459.10:ENST00000634721.1:ENST00000634762.1:ENST00000437814.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	129	2	2.64874	3.378885	4.10903	0.00235868	7.08337e-5	0.0436827	0.00695952
chr7	157337811	157337911	3455307	0	+	0.42	(0.408,0.44]	chr7	323046	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	DNAJB6	ENSG00000105993.15	ENST00000441561.5:ENST00000429029.6:ENST00000262177.9:ENST00000486083.6:ENST00000417758.5:ENST00000459889.5:ENST00000443280.5:ENST00000488001.5:ENST00000441291.5:ENST00000437030.5:ENST00000412557.5:ENST00000453383.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	86	2	3.03882	3.37878	3.71874	9.66897e-4	3.17998e-4	0.0282401	0.0159645
chr18	2673688	2673775	6865043	0	+	0.367816	(0.35,0.378]	chr18	679958	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SMCHD1	ENSG00000101596.17	ENST00000320876.11:ENST00000688342.1:ENST00000684915.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	63	2	1.71241	3.378765	5.04512	0.019274	0.00393262	0.119831	0.0548259
chr11	62884980	62885076	4799638	0	+	0.489583	(0.476,0.515]	chr11	444839	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SLC3A2	ENSG00000168003.18	ENST00000680729.1:ENST00000680002.1:ENST00000681467.1:ENST00000377890.6:ENST00000538084.2:ENST00000681569.1:ENST00000680725.1:ENST00000377891.6:ENST00000377889.6:ENST00000681215.1:ENST00000535296.5:ENST00000680631.1:ENST00000544377.2:ENST00000680610.1:ENST00000680297.1:ENST00000680134.1:ENST00000681232.1:ENST00000681657.1:ENST00000541425.6:ENST00000679908.1:ENST00000681563.1:ENST00000338663.12:ENST00000680654.1:ENST00000681107.1:ENST00000541649.2:ENST00000538682.6:ENST00000536981.6:ENST00000539891.6:ENST00000679594.1:ENST00000535768.2:ENST00000537508.6:ENST00000457660.6:ENST00000546312.5:ENST00000542922.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	63	2	3.05152	3.378525	3.70553	0.0064848	3.44823e-4	0.0699952	0.0165103
chr1	234606839	234606938	661463	0	-	0.353535	(0.35,0.378]	chr1	78268	27	UTR3	UTR3:EXON_MRNA	IRF2BP2	ENSG00000168264.11	ENST00000366609.4:ENST00000366610.7	protein_coding	protein_coding	protein_coding	protein_coding	10	281	2	3.35001	3.378435	3.40686	2.04141e-5	9.30971e-7	0.00366937	5.48816e-4
chr4	126532519	126532619	2236034	0	-	0.44	(0.408,0.44]	chr4	219023	670	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	4	53	2	1.79818	3.3781749999999997	4.95817	0.020428	0.00372419	0.122109	0.0535094
chr17	49012024	49012124	6624751	0	+	0.5	(0.476,0.515]	chr17	646597	73	INTRON	INTRON	IGF2BP1	ENSG00000159217.10	ENST00000290341.8:ENST00000431824.2:ENST00000515586.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	52	2	2.05714	3.3781600000000003	4.69918	0.0156961	0.00400966	0.101453	0.057767
chr18	3006526	3006626	6945034	0	-	0.53	(0.515,0.57]	chr18	686840	238	INTRON	INTRON	LPIN2	ENSG00000101577.10	ENST00000261596.8:ENST00000677752.1	protein_coding	protein_coding	protein_coding	protein_coding	3	73	2	2.99316	3.37805	3.76294	9.21623e-4	2.08636e-4	0.0278396	0.0125926
chr20	47347155	47347255	7349416	0	-	0.37	(0.35,0.378]	chr20	749346	282	INTRON	INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000435836.5:ENST00000446894.5:ENST00000441977.1	protein_coding	protein_coding	protein_coding	protein_coding	10	184	2	2.14071	3.3779899999999996	4.61527	8.34726e-4	6.49859e-6	0.0263691	0.00193074
chr16	88724508	88724608	6539575	0	-	0.51	(0.476,0.515]	chr16	633887	1	SS5_PROX	SS5_PROX:INTRON	PIEZO1	ENSG00000103335.22	ENST00000301015.14:ENST00000474606.1:ENST00000475586.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	211	2	3.36262	3.3779500000000002	3.39328	9.82469e-6	6.25556e-6	0.00242409	0.00175994
chr10	22554068	22554168	4578883	0	-	0.47	(0.44,0.476]	chr10	421979	29	INTRON	INTRON	PIP4K2A	ENSG00000150867.14	ENST00000376573.9:ENST00000323883.11:ENST00000545335.5:ENST00000604912.1	protein_coding	protein_coding	protein_coding	protein_coding	2	63	2	3.36231	3.377765	3.39322	0.00187283	0.00161678	0.0390476	0.0369204
chr4	159223860	159223960	2074710	0	+	0.41	(0.408,0.44]	chr4	205190	129	INTRON	INTRON	RAPGEF2	ENSG00000109756.10	ENST00000644474.1:ENST00000691494.1:ENST00000505478.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	46	2	1.93002	3.37766	4.8253	0.022095	0.0056738	0.123903	0.0653997
chr11	107813392	107813492	5033352	0	-	0.44	(0.408,0.44]	chr11	474331	12	INTRON	INTRON	SLC35F2	ENSG00000110660.15	ENST00000525071.5:ENST00000525815.6:ENST00000533664.1:ENST00000375682.8:ENST00000532513.2:ENST00000524991.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	50	2	1.69172	3.377575	5.06343	0.0486032	0.00101725	0.153946	0.0293497
chr1	50645741	50645841	449102	0	-	0.54	(0.515,0.57]	chr1	54223	389	INTRON	INTRON	FAF1	ENSG00000185104.21	ENST00000396153.7:ENST00000494400.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	47	2	2.15866	3.3774800000000003	4.5963	0.0100547	0.00370287	0.0848452	0.0561162
chr15	63707726	63707825	6199610	0	-	0.515152	(0.476,0.515]	chr15	591306	5	INTRON	INTRON	HERC1	ENSG00000103657.14	ENST00000443617.7:ENST00000561400.1	protein_coding	protein_coding	protein_coding	protein_coding	5	134	2	3.00106	3.37748	3.7539	2.78737e-4	1.33371e-5	0.0153269	0.00271419
chr5	87275582	87275682	2410865	0	+	0.58	(0.57,1]	chr5	232377	59	INTRON	INTRON	RASA1	ENSG00000145715.15	ENST00000274376.11:ENST00000515800.6:ENST00000456692.6:ENST00000506290.1:ENST00000512763.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	25	2	2.05026	3.3772650000000004	4.70427	0.0321326	9.25341e-4	0.145026	0.0278396
chr6	43003750	43003850	2868154	0	+	0.63	(0.57,1]	chr6	271466	137	INTRON	INTRON	PPP2R5D	ENSG00000112640.16	ENST00000394110.7:ENST00000472118.5:ENST00000485511.6:ENST00000230402.10:ENST00000461010.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	25	2	2.05026	3.3772650000000004	4.70427	0.0321326	9.25341e-4	0.145026	0.0278396
chr7	100126606	100126706	3585614	0	-	0.46	(0.44,0.476]	chr7	334241	2	SS5_PROX	SS5_PROX:INTRON	ENSG00000242798	ENSG00000242798.1	ENST00000494221.1	lncRNA	lncRNA	lncRNA	lncRNA	3	86	2	3.11801	3.377195	3.63638	6.56773e-4	4.74104e-4	0.0233791	0.0196816
chr14	19067393	19067484	5655074	0	+	0.395604	(0.378,0.408]	chr14	539001	7	INTRON	INTRON	DUXAP9	ENSG00000225210.10	ENST00000549484.5:ENST00000547220.5:ENST00000610585.4:ENST00000621361.4:ENST00000620237.1:ENST00000619938.1:ENST00000644980.1:ENST00000619210.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	1	34	2	2.78946	3.377085	3.96471	0.032421	0.0158859	0.145026	0.101453
chr1	180057767	180057866	268495	0	+	0.474747	(0.44,0.476]	chr1	31446	29	INTRON	INTRON	CEP350	ENSG00000135837.16	ENST00000367607.8	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	2.74372	3.3770499999999997	4.01038	0.0433743	0.0153007	0.148082	0.108569
chr15	101283870	101283969	6269918	0	-	0.474747	(0.44,0.476]	chr15	597986	17	INTRON	INTRON	SNRPA1	ENSG00000131876.18	ENST00000254193.11:ENST00000558036.5:ENST00000559309.5:ENST00000560307.5:ENST00000560433.5:ENST00000394082.8:ENST00000540017.6:ENST00000560496.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	29	2	2.74372	3.3770499999999997	4.01038	0.0433743	0.0153007	0.148082	0.108569
chr17	81844823	81844915	6849942	0	-	0.445652	(0.44,0.476]	chr17	678315	9	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	P4HB	ENSG00000185624.16	ENST00000680083.1:ENST00000680416.1:ENST00000575069.6:ENST00000681030.1:ENST00000680884.1:ENST00000681161.1:ENST00000681515.1:ENST00000679470.1:ENST00000571617.2:ENST00000679688.1:ENST00000680226.1:ENST00000571507.6:ENST00000680400.1:ENST00000574914.2:ENST00000331483.9:ENST00000680914.1:ENST00000680593.1:ENST00000681420.1:ENST00000681693.1:ENST00000576390.6:ENST00000681835.1:ENST00000681954.1:ENST00000681259.1:ENST00000681566.1:ENST00000680076.1:ENST00000680105.1:ENST00000680368.1:ENST00000474712.2:ENST00000473021.2:ENST00000681872.1:ENST00000484286.2:ENST00000466567.3:ENST00000679396.1:ENST00000415593.6:ENST00000679889.1:ENST00000681571.1:ENST00000680719.1:ENST00000680191.1:ENST00000680547.1:ENST00000680799.1:ENST00000680208.1:ENST00000679439.1:ENST00000439918.7:ENST00000472244.6:ENST00000681031.1:ENST00000680846.1:ENST00000681068.1:ENST00000477607.7:ENST00000679366.1:ENST00000681020.1:ENST00000681614.1:ENST00000681485.1:ENST00000679628.1:ENST00000476482.2:ENST00000679455.1:ENST00000680259.1:ENST00000680559.1:ENST00000680909.1:ENST00000681760.1:ENST00000681933.1:ENST00000570907.6:ENST00000680732.1:ENST00000680838.1:ENST00000680847.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	29	2	2.74372	3.3770499999999997	4.01038	0.0433743	0.0153007	0.148082	0.108569
chr19	1076762	1076861	6993744	0	+	0.444444	(0.44,0.476]	chr19	692778	15	INTRON	INTRON	ARHGAP45	ENSG00000180448.11	ENST00000539243.6:ENST00000313093.7:ENST00000587602.5:ENST00000591293.2:ENST00000590214.5:ENST00000586866.5:ENST00000543365.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	29	2	2.74372	3.3770499999999997	4.01038	0.0433743	0.0153007	0.148082	0.108569
chr19	34405490	34405589	7052898	0	+	0.464646	(0.44,0.476]	chr19	703447	1	INTRON	INTRON	PDCD2L	ENSG00000126249.8	ENST00000246535.4:ENST00000587385.6:ENST00000587065.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	29	2	2.74372	3.3770499999999997	4.01038	0.0433743	0.0153007	0.148082	0.108569
chr2	61459766	61459866	1130444	0	-	0.5	(0.476,0.515]	chr2	121499	386	INTRON	INTRON	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000453133.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	134	2	2.93667	3.37703	3.81739	3.86734e-4	8.91277e-6	0.0182867	0.00214966
chrX	123702757	123702855	7878753	0	-	0.326531	(0.32,0.35]	chrX	802576	47	INTRON	INTRON	THOC2	ENSG00000125676.20	ENST00000245838.13:ENST00000355725.8:ENST00000433883.1:ENST00000419789.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	64	2	1.42176	3.37697	5.33218	0.0511006	0.00204346	0.176696	0.04086
chr11	647151	647248	4888988	0	-	0.505155	(0.476,0.515]	chr11	457676	2	INTRON	INTRON	DEAF1	ENSG00000177030.19	ENST00000382409.4:ENST00000527170.5:ENST00000685854.1:ENST00000683307.1:ENST00000528864.6:ENST00000525626.6:ENST00000682936.1:ENST00000690068.1:ENST00000692634.1:ENST00000687329.1:ENST00000686001.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	30	2	2.13854	3.376865	4.61519	0.0776563	0.00528365	0.196285	0.0656295
chr16	3466477	3466577	6281928	0	+	0.48	(0.476,0.515]	chr16	601243	34	INTRON	INTRON	NAA60	ENSG00000122390.19	ENST00000572757.5:ENST00000573593.5:ENST00000570372.5:ENST00000575936.5:ENST00000407558.9:ENST00000424546.6:ENST00000575733.5:ENST00000649205.1:ENST00000572169.6:ENST00000573580.5:ENST00000574950.5:ENST00000649360.1:ENST00000574328.5:ENST00000421765.7:ENST00000360862.9:ENST00000414063.6:ENST00000577013.6:ENST00000572584.2:ENST00000571107.5:ENST00000572739.5:ENST00000576787.5:ENST00000571696.6:ENST00000573345.5:ENST00000575076.5:ENST00000576916.5:ENST00000572942.5:ENST00000570551.5:ENST00000574380.5:ENST00000572131.5:ENST00000648681.1:ENST00000570819.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	30	2	2.13854	3.376865	4.61519	0.0776563	0.00528365	0.196285	0.0656295
chr2	61317967	61318067	1128999	0	-	0.5	(0.476,0.515]	chr2	121379	2	SS3_PROX	SS3_PROX:INTRON	USP34	ENSG00000115464.15	ENST00000398571.7	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	2.13854	3.376865	4.61519	0.0776563	0.00528365	0.196285	0.0656295
chr2	135603606	135603706	874678	0	+	0.48	(0.476,0.515]	chr2	97903	5	INTRON	INTRON	R3HDM1	ENSG00000048991.17	ENST00000463230.5:ENST00000683871.1:ENST00000409478.5:ENST00000264160.8:ENST00000438014.5:ENST00000488035.5:ENST00000410054.5:ENST00000628915.2:ENST00000436436.5:ENST00000409606.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	30	2	2.13854	3.376865	4.61519	0.0776563	0.00528365	0.196285	0.0656295
chr3	47874388	47874488	1685332	0	-	0.48	(0.476,0.515]	chr3	172183	19	INTRON	INTRON	MAP4	ENSG00000047849.22	ENST00000429422.5:ENST00000683076.1:ENST00000395734.7:ENST00000426837.6:ENST00000360240.10:ENST00000420772.6:ENST00000335271.9:ENST00000383736.3:ENST00000462206.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	30	2	2.13854	3.376865	4.61519	0.0776563	0.00528365	0.196285	0.0656295
chrX	9469140	9469240	7618694	0	+	0.48	(0.476,0.515]	chrX	779938	33	INTRON	INTRON	TBL1X	ENSG00000101849.18	ENST00000407597.7:ENST00000380961.5:ENST00000424279.6:ENST00000645353.2:ENST00000422314.5	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	2.13854	3.376865	4.61519	0.0776563	0.00528365	0.196285	0.0656295
chr1	44644305	44644403	92217	0	+	0.479592	(0.476,0.515]	chr1	12217	13	EXON_LNCRNA	EXON_LNCRNA:SS3_PROX:INTRON	RNF220	ENSG00000187147.18	ENST00000355387.6:ENST00000361799.7:ENST00000372247.6:ENST00000440132.2:ENST00000335497.11:ENST00000474064.5:ENST00000471494.5:ENST00000497469.5:ENST00000475378.5:ENST00000484745.5:ENST00000474394.5:ENST00000480686.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	30	2	2.3223	3.376615	4.43093	0.0519312	0.00931369	0.159306	0.0855292
chr11	479652	479745	4719200	0	+	0.505376	(0.476,0.515]	chr11	436023	1	SS3_PROX	SS3_PROX:INTRON	PTDSS2	ENSG00000174915.12	ENST00000532614.5:ENST00000308020.6:ENST00000531520.5:ENST00000526878.5:ENST00000530087.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	30	2	2.3223	3.376615	4.43093	0.0519312	0.00931369	0.159306	0.0855292
chr12	57254313	57254405	5337451	0	-	0.5	(0.476,0.515]	chr12	510556	7	UTR3	UTR3:EXON_MRNA	R3HDM2	ENSG00000179912.21	ENST00000393811.6:ENST00000402412.6:ENST00000347140.7:ENST00000358907.6:ENST00000441731.6:ENST00000634871.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	30	2	2.3223	3.376615	4.43093	0.0519312	0.00931369	0.159306	0.0855292
chr17	18361434	18361530	6739265	0	-	0.489583	(0.476,0.515]	chr17	661533	5	INTRON	INTRON	SHMT1	ENSG00000176974.21	ENST00000352886.10:ENST00000316694.8:ENST00000580002.5:ENST00000354098.7:ENST00000579558.5:ENST00000582653.1:ENST00000395682.3:ENST00000583780.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	30	2	2.3223	3.376615	4.43093	0.0519312	0.00931369	0.159306	0.0855292
chr2	240559581	240559674	1346689	0	-	0.494624	(0.476,0.515]	chr2	141277	6	INTRON	INTRON	ANKMY1	ENSG00000144504.16	ENST00000403283.5:ENST00000405002.5:ENST00000484526.5:ENST00000496300.5:ENST00000441168.5:ENST00000443318.1:ENST00000462004.5:ENST00000418708.3:ENST00000418505.3:ENST00000464991.5:ENST00000411765.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	30	2	2.3223	3.376615	4.43093	0.0519312	0.00931369	0.159306	0.0855292
chr20	35004870	35004970	7332007	0	-	0.48	(0.476,0.515]	chr20	746880	3	SS3_PROX	SS3_PROX:INTRON	TRPC4AP	ENSG00000100991.12	ENST00000252015.3:ENST00000451813.6	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	2.3223	3.376615	4.43093	0.0519312	0.00931369	0.159306	0.0855292
chr5	140432709	140432808	2503135	0	+	0.353535	(0.35,0.378]	chr5	239166	301	INTRON	INTRON	ANKHD1	ENSG00000131503.21	ENST00000297183.10:ENST00000616482.4:ENST00000360839.7:ENST00000421134.5:ENST00000394723.7:ENST00000511151.5:ENST00000394722.7	protein_coding	protein_coding	protein_coding	protein_coding	2	40	2	2.10859	3.3765799999999997	4.64457	0.0272722	0.012652	0.136494	0.0926667
chr10	22698338	22698438	4580342	0	-	0.39	(0.378,0.408]	chr10	422046	38	INTRON	INTRON	PIP4K2A	ENSG00000150867.14	ENST00000376573.9:ENST00000545335.5	protein_coding	protein_coding	protein_coding	protein_coding	2	65	2	3.27922	3.3764950000000002	3.47377	0.00312717	0.00103087	0.0499153	0.0294094
chr2	43945092	43945192	1110083	0	-	0.4	(0.378,0.408]	chr2	119026	13	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	LRPPRC	ENSG00000138095.20	ENST00000260665.12:ENST00000682308.1:ENST00000683459.1:ENST00000683623.1:ENST00000683125.1:ENST00000683994.1:ENST00000684619.1:ENST00000683833.1:ENST00000682546.1:ENST00000682585.1:ENST00000683220.1:ENST00000683796.1:ENST00000682607.1:ENST00000683590.1:ENST00000684306.1:ENST00000683213.1:ENST00000682779.1:ENST00000682885.1:ENST00000684743.1:ENST00000683346.1:ENST00000683072.1:ENST00000682303.1:ENST00000683329.1:ENST00000682933.1:ENST00000684383.1:ENST00000682480.1:ENST00000684290.1:ENST00000684341.1:ENST00000682595.1:ENST00000683645.1:ENST00000683802.1:ENST00000682845.1:ENST00000681961.1:ENST00000683694.1:ENST00000683989.1:ENST00000447246.2:ENST00000409659.6:ENST00000682104.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	65	2	3.27922	3.3764950000000002	3.47377	0.00312717	0.00103087	0.0499153	0.0294094
chr6	4818599	4818699	2791284	0	+	0.38	(0.378,0.408]	chr6	263598	414	INTRON	INTRON	CDYL	ENSG00000153046.18	ENST00000328908.9:ENST00000491864.1:ENST00000440139.5:ENST00000483019.1:ENST00000397588.8:ENST00000472453.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	65	2	3.27922	3.3764950000000002	3.47377	0.00312717	0.00103087	0.0499153	0.0294094
chr6	57133783	57133875	2878504	0	+	0.532609	(0.515,0.57]	chr6	273277	2	INTRON	INTRON	ZNF451	ENSG00000112200.17	ENST00000357489.7:ENST00000444273.6:ENST00000370706.9:ENST00000491832.6:ENST00000502749.1:ENST00000504603.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	246	2	2.90103	3.376325	3.85162	2.31169e-6	9.72692e-7	0.00095233100000000005	6.11138e-4
chr16	29920598	29920695	6471968	0	-	0.360825	(0.35,0.378]	chr16	625365	11	UTR3	UTR3:EXON_MRNA:INTRON	KCTD13	ENSG00000174943.11	ENST00000308768.9:ENST00000568000.6:ENST00000566842.5:ENST00000568995.1:ENST00000563264.1:ENST00000566413.1:ENST00000561540.2:ENST00000648037.1:ENST00000567795.3:ENST00000649581.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	40	2	1.82887	3.37621	4.92355	0.0584878	0.00573514	0.189395	0.0657377
chr13	27148592	27148692	5566334	0	-	0.45	(0.44,0.476]	chr13	532032	316	INTRON	INTRON	USP12	ENSG00000152484.14	ENST00000282344.11	protein_coding	protein_coding	protein_coding	protein_coding	2	38	2	2.14573	3.3761	4.60647	0.0238593	0.0102339	0.129075	0.0850389
chr2	10617821	10617919	1065674	0	-	0.469388	(0.44,0.476]	chr2	113720	45	INTRON	INTRON	NOL10	ENSG00000115761.17	ENST00000695464.1:ENST00000695470.1:ENST00000695467.1:ENST00000695468.1:ENST00000695469.1:ENST00000695466.1:ENST00000381685.10:ENST00000695471.1:ENST00000345985.7:ENST00000538384.5:ENST00000695472.1:ENST00000695473.1:ENST00000695475.1:ENST00000695476.1:ENST00000695477.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	38	2	2.14573	3.3761	4.60647	0.0238593	0.0102339	0.129075	0.0850389
chr7	73509554	73509651	3554972	0	-	0.474227	(0.44,0.476]	chr7	330807	7	INTRON	INTRON	BAZ1B	ENSG00000009954.11	ENST00000339594.9:ENST00000404251.1	protein_coding	protein_coding	protein_coding	protein_coding	2	38	2	2.14573	3.3761	4.60647	0.0238593	0.0102339	0.129075	0.0850389
chr22	21844430	21844530	7561154	0	-	0.4	(0.378,0.408]	chr22	773388	362	INTRON	INTRON	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	5	60	2	1.63086	3.37607	5.12128	0.0252353	0.00251746	0.133676	0.0446195
chr8	140150430	140150530	4072252	0	-	0.31	(0.28,0.32]	chr8	370046	684	INTRON	INTRON	TRAPPC9	ENSG00000167632.18	ENST00000648948.2:ENST00000438773.4:ENST00000520857.5:ENST00000521667.5:ENST00000517667.5:ENST00000520532.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	37	2	2.51488	3.376035	4.23719	0.0380957	0.0264147	0.141678	0.133676
chr2	171155389	171155489	1264046	0	-	0.32	(0.28,0.32]	chr2	133932	4	SS5_PROX	SS5_PROX:INTRON	TLK1	ENSG00000198586.14	ENST00000431350.7:ENST00000360843.7:ENST00000359766.7:ENST00000521943.5:ENST00000409443.6:ENST00000413010.5:ENST00000470340.1:ENST00000466220.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	106	2	2.94244	3.3758600000000003	3.8092800000000002	0.00144407	5.62738e-4	0.0348397	0.0219303
chr7	156824620	156824719	3687325	0	-	0.444444	(0.44,0.476]	chr7	342068	3	INTRON	INTRON	LMBR1	ENSG00000105983.23	ENST00000353442.10:ENST00000415428.5:ENST00000454132.5:ENST00000434503.5:ENST00000430278.5:ENST00000434278.5:ENST00000444719.5:ENST00000461469.5:ENST00000414218.1:ENST00000434453.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	38	2	1.85146	3.3757300000000003	4.9	0.0545846	0.00423315	0.182529	0.0572185
chr19	949900	950000	6992729	0	+	0.59	(0.57,1]	chr19	692392	168	INTRON	INTRON	ARID3A	ENSG00000116017.11	ENST00000263620.8:ENST00000587532.5:ENST00000457152.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	35	2	3.2676	3.375485	3.48337	0.00176203	6.20854e-4	0.0376652	0.0223951
chr18	36038316	36038415	6963251	0	-	0.59596	(0.57,1]	chr18	689069	41	INTRON	INTRON	RPRD1A	ENSG00000141425.18	ENST00000399022.9:ENST00000590898.5:ENST00000357384.8:ENST00000588737.5:ENST00000589050.1:ENST00000592674.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:nonsense_mediated_decay	2	35	2	3.34751	3.37542	3.40333	0.00122677	9.20604e-4	0.0320791	0.0278392
chr5	145595108	145595208	2744232	0	-	0.39	(0.378,0.408]	chr5	258670	1214	INTRON	INTRON	PRELID2	ENSG00000186314.12	ENST00000510259.5	protein_coding	processed_transcript	protein_coding	processed_transcript	2	43	2	2.05897	3.37533	4.69169	0.0339294	0.00432302	0.134508	0.0599409
chr4	39316215	39316314	2128754	0	-	0.333333	(0.32,0.35]	chr4	209827	29	INTRON	INTRON	RFC1	ENSG00000035928.17	ENST00000381897.5:ENST00000349703.7:ENST00000504554.1:ENST00000509084.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	34	2	2.37794	3.3753150000000005	4.37269	0.0498601	0.0154102	0.156383	0.108569
chrY	11194177	11194277	7929954	0	-	0.35	(0.32,0.35]	chrY	807176	307	INTRON	INTRON	ENSG00000278212	ENSG00000278212.3	ENST00000652671.1:ENST00000651211.2:ENST00000687423.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	1	34	2	2.37794	3.3753150000000005	4.37269	0.0498601	0.0154102	0.156383	0.108569
chr1	28512076	28512175	57236	0	+	0.484848	(0.476,0.515]	chr1	7392	13	INTRON	INTRON	RCC1	ENSG00000180198.17	ENST00000398958.6:ENST00000649185.1:ENST00000427469.5:ENST00000683442.1:ENST00000434290.6:ENST00000373833.10:ENST00000419074.5	protein_coding	protein_coding	protein_coding	protein_coding	5	67	2	1.75694	3.3751800000000003	4.99342	0.0175942	0.00139274	0.105143	0.0341261
chr16	69623304	69623404	6380583	0	+	0.39	(0.378,0.408]	chr16	613167	544	INTRON	INTRON	NFAT5	ENSG00000102908.22	ENST00000426654.6:ENST00000349945.7:ENST00000354436.6:ENST00000627621.3:ENST00000650987.1:ENST00000567990.5:ENST00000567239.5:ENST00000393742.7:ENST00000565301.2:ENST00000566899.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	67	2	2.84663	3.37517	3.90371	0.0133954	1.30398e-4	0.0946278	0.00983066
chr10	97746689	97746787	4505386	0	+	0.459184	(0.44,0.476]	chr10	414790	14	INTRON	INTRON	ZFYVE27	ENSG00000155256.18	ENST00000337540.11:ENST00000370613.7:ENST00000370610.7:ENST00000357540.8:ENST00000393677.8:ENST00000423811.3:ENST00000684270.1:ENST00000359980.5	protein_coding	protein_coding	protein_coding	protein_coding	5	134	2	3.29255	3.375145	3.45774	1.22865e-4	3.52404e-5	0.00997185	0.00474635
chr10	21552321	21552421	4404591	0	+	0.25	[0,0.28]	chr10	406432	4	SS5_PROX	SS5_PROX:INTRON	MLLT10	ENSG00000078403.17	ENST00000651097.1:ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000377100.8:ENST00000377091.7:ENST00000650772.1:ENST00000651298.1:ENST00000652497.1:ENST00000495130.5:ENST00000377059.7:ENST00000621220.4:ENST00000476557.5:ENST00000462999.5:ENST00000430455.2:ENST00000479634.1:ENST00000480415.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	35	2	2.36637	3.37512	4.38387	0.0501911	0.0500615	0.17488	0.156383
chr12	116201768	116201868	5424789	0	-	0.26	[0,0.28]	chr12	518271	206	INTRON	INTRON	MED13L	ENSG00000123066.9	ENST00000281928.9:ENST00000650226.1:ENST00000548743.2:ENST00000647567.1:ENST00000551197.2	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	2.36637	3.37512	4.38387	0.0501911	0.0500615	0.17488	0.156383
chr15	27220956	27221056	5984653	0	+	0.28	[0,0.28]	chr15	569164	1938	INTRON	INTRON	GABRG3	ENSG00000182256.13	ENST00000615808.5:ENST00000555083.5	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	2.36637	3.37512	4.38387	0.0501911	0.0500615	0.17488	0.156383
chr17	44442383	44442482	6780221	0	-	0.272727	[0,0.28]	chr17	668667	33	INTRON	INTRON	GPATCH8	ENSG00000186566.13	ENST00000591680.6:ENST00000335500.8:ENST00000587228.5:ENST00000585614.1:ENST00000590041.5:ENST00000586265.5:ENST00000592746.5:ENST00000586037.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	35	2	2.36637	3.37512	4.38387	0.0501911	0.0500615	0.17488	0.156383
chr22	46944317	46944416	7537017	0	+	0.232323	[0,0.28]	chr22	770616	305	INTRON	INTRON	TBC1D22A	ENSG00000054611.14	ENST00000380995.5:ENST00000337137.9:ENST00000407381.7:ENST00000355704.7:ENST00000394449.6:ENST00000441162.5:ENST00000406733.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	35	2	2.36637	3.37512	4.38387	0.0501911	0.0500615	0.17488	0.156383
chr3	25614604	25614704	1641624	0	-	0.24	[0,0.28]	chr3	168459	15	INTRON	INTRON	TOP2B	ENSG00000077097.16	ENST00000264331.9:ENST00000413971.5:ENST00000435706.6:ENST00000475717.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	35	2	2.36637	3.37512	4.38387	0.0501911	0.0500615	0.17488	0.156383
chr4	75658742	75658842	2161959	0	-	0.27	[0,0.28]	chr4	213006	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	G3BP2	ENSG00000138757.15	ENST00000676666.1:ENST00000678062.1:ENST00000678100.1:ENST00000678122.1:ENST00000677265.1:ENST00000678971.1:ENST00000679281.1:ENST00000677333.1:ENST00000676470.1:ENST00000677620.1:ENST00000677606.1:ENST00000678798.1:ENST00000677583.1:ENST00000678447.1:ENST00000678875.1:ENST00000678244.1:ENST00000676974.1:ENST00000677003.1:ENST00000677889.1:ENST00000678329.1:ENST00000676584.1:ENST00000678552.1:ENST00000677192.1:ENST00000677727.1:ENST00000678265.1:ENST00000676839.1:ENST00000677876.1:ENST00000678123.1:ENST00000678578.1:ENST00000677171.1:ENST00000395719.7:ENST00000359707.9:ENST00000677060.1:ENST00000679294.1:ENST00000677201.1:ENST00000677952.1:ENST00000677125.1:ENST00000678273.1:ENST00000357854.7:ENST00000677162.1:ENST00000677566.1:ENST00000677970.1:ENST00000503660.5:ENST00000678670.1:ENST00000677733.1:ENST00000676926.1:ENST00000502654.5:ENST00000509100.6:ENST00000515457.6:ENST00000507745.5:ENST00000513927.1:ENST00000511146.5:ENST00000507252.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	35	2	2.36637	3.37512	4.38387	0.0501911	0.0500615	0.17488	0.156383
chr7	737027	737127	3267950	0	+	0.18	[0,0.28]	chr7	303447	68	INTRON	INTRON	DNAAF5	ENSG00000164818.16	ENST00000297440.11:ENST00000437419.5:ENST00000438961.1:ENST00000440747.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	35	2	2.36637	3.37512	4.38387	0.0501911	0.0500615	0.17488	0.156383
chr7	73466037	73466116	3554526	0	-	0.265823	[0,0.28]	chr7	330760	1	SS5_PROX	SS5_PROX:INTRON	BAZ1B	ENSG00000009954.11	ENST00000339594.9:ENST00000404251.1:ENST00000466844.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	35	2	2.36637	3.37512	4.38387	0.0501911	0.0500615	0.17488	0.156383
chr9	98849289	98849388	4174079	0	+	0.252525	[0,0.28]	chr9	380409	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	GALNT12	ENSG00000119514.7	ENST00000375011.4:ENST00000470473.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	35	2	2.36637	3.37512	4.38387	0.0501911	0.0500615	0.17488	0.156383
chr22	21673412	21673512	7482525	0	+	0.53	(0.515,0.57]	chr22	763337	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	PPIL2	ENSG00000100023.20	ENST00000679795.1:ENST00000679540.1:ENST00000679580.1:ENST00000681286.1:ENST00000680061.1:ENST00000681338.1:ENST00000681956.1:ENST00000679827.1:ENST00000679534.1:ENST00000679479.1:ENST00000680393.1:ENST00000680463.1:ENST00000680426.1:ENST00000335025.12:ENST00000498109.2:ENST00000496819.2:ENST00000398831.8:ENST00000681394.1:ENST00000679477.1:ENST00000626352.2:ENST00000417788.5:ENST00000458567.5:ENST00000681791.1:ENST00000679692.1:ENST00000680962.1:ENST00000679857.1:ENST00000679586.1:ENST00000680094.1:ENST00000484439.5:ENST00000680434.1:ENST00000680109.1:ENST00000406385.1:ENST00000680022.1:ENST00000681137.1:ENST00000680860.1:ENST00000680183.1:ENST00000485930.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	44	2	1.75372	3.3750349999999996	4.99635	0.0386904	8.06602e-4	0.14279	0.0258804
chr2	61274064	61274164	1128533	0	-	0.49	(0.476,0.515]	chr2	121280	75	INTRON	INTRON	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000472706.5:ENST00000453734.1:ENST00000484179.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	100	2	2.97663	3.374985	3.77334	3.52709e-4	2.26055e-4	0.0174637	0.0132815
chr3	179403583	179403681	1878407	0	-	0.489796	(0.476,0.515]	chr3	187633	19	INTRON	INTRON	GNB4	ENSG00000114450.11	ENST00000232564.8:ENST00000676128.1:ENST00000466899.6:ENST00000674862.1:ENST00000674713.1:ENST00000468623.6	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	2.73205	3.37491	4.01777	0.0411361	0.0159328	0.1451	0.109464
chr7	105535791	105535882	3375720	0	+	0.494505	(0.476,0.515]	chr7	316046	1	SS5_PROX	SS5_PROX:INTRON	RINT1	ENSG00000135249.8	ENST00000467392.5:ENST00000482041.5:ENST00000493041.5:ENST00000257700.7:ENST00000497979.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	29	2	2.73205	3.37491	4.01777	0.0411361	0.0159328	0.1451	0.109464
chr7	127743295	127743395	3403323	0	+	0.49	(0.476,0.515]	chr7	318134	215	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000468166.5:ENST00000465900.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	29	2	2.73205	3.37491	4.01777	0.0411361	0.0159328	0.1451	0.109464
chr12	50453059	50453159	5136868	0	+	0.51	(0.476,0.515]	chr12	484419	2	SS3_PROX	SS3_PROX:INTRON	LARP4	ENSG00000161813.23	ENST00000293618.12:ENST00000429001.7:ENST00000398473.7:ENST00000522085.5:ENST00000518444.5:ENST00000518561.5:ENST00000347328.9:ENST00000520064.2:ENST00000521120.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	83	2	3.04097	3.374895	3.70882	7.0601e-4	4.74495e-4	0.0241881	0.0201638
chr7	73691900	73691997	3331653	0	+	0.505155	(0.476,0.515]	chr7	309891	5	INTRON	INTRON	BUD23	ENSG00000071462.12	ENST00000432522.5:ENST00000421744.5:ENST00000265758.7:ENST00000496153.5:ENST00000478670.5:ENST00000441822.5:ENST00000436944.5:ENST00000428163.5:ENST00000463307.5:ENST00000423497.5:ENST00000430270.5:ENST00000487006.2:ENST00000430446.2:ENST00000442099.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	83	2	3.04097	3.374895	3.70882	7.0601e-4	4.74495e-4	0.0241881	0.0201638
chr6	57138134	57138233	2878549	0	+	0.393939	(0.378,0.408]	chr6	273283	29	INTRON	INTRON	ZNF451	ENSG00000112200.17	ENST00000357489.7:ENST00000444273.6:ENST00000370706.9:ENST00000491832.6:ENST00000502749.1:ENST00000504603.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	155	2	2.36489	3.374705	4.38452	4.21948e-4	1.93751e-5	0.0183838	0.00356815
chr11	108192881	108192977	5034887	0	-	0.520833	(0.515,0.57]	chr11	474449	3	INTRON	INTRON	NPAT	ENSG00000149308.17	ENST00000278612.9:ENST00000610253.5:ENST00000531384.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	55	2	3.25412	3.3745399999999997	3.49496	0.00224554	9.61701e-4	0.0435144	0.0282401
chr17	42478841	42478926	6611495	0	+	0.247059	[0,0.28]	chr17	644102	4	EXON_MRNA	EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ATP6V0A1	ENSG00000033627.17	ENST00000393829.6:ENST00000343619.9:ENST00000537728.5:ENST00000264649.10:ENST00000585525.5:ENST00000544137.5:ENST00000589727.5:ENST00000592324.1:ENST00000587375.1:ENST00000586001.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	144	2	2.8454	3.3745200000000004	3.90364	7.95824e-4	5.45367e-4	0.0258804	0.0215432
chr10	35342898	35342998	4424566	0	+	0.41	(0.408,0.44]	chr10	407899	53	INTRON	INTRON	CCNY	ENSG00000108100.18	ENST00000374706.5:ENST00000490012.6:ENST00000493157.6:ENST00000374704.8:ENST00000265375.13:ENST00000339497.7:ENST00000492478.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	29	2	2.74518	3.3745149999999997	4.00385	0.0454568	0.0152229	0.149888	0.108535
chr12	116246295	116246395	5425237	0	-	0.44	(0.408,0.44]	chr12	518291	82	INTRON	INTRON	MED13L	ENSG00000123066.9	ENST00000281928.9:ENST00000650226.1:ENST00000548743.2:ENST00000551197.2:ENST00000650375.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	29	2	2.74518	3.3745149999999997	4.00385	0.0454568	0.0152229	0.149888	0.108535
chr2	159765074	159765174	900020	0	+	0.41	(0.408,0.44]	chr2	99575	4	SS5_PROX	SS5_PROX:INTRON	MARCHF7	ENSG00000136536.15	ENST00000539065.5:ENST00000259050.8:ENST00000409175.6:ENST00000409591.5:ENST00000420397.1:ENST00000478396.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	29	2	2.74518	3.3745149999999997	4.00385	0.0454568	0.0152229	0.149888	0.108535
chr14	74886429	74886527	5789819	0	+	0.469388	(0.44,0.476]	chr14	548563	4	INTRON	INTRON	DLST	ENSG00000119689.15	ENST00000556460.5:ENST00000555492.5:ENST00000557012.5:ENST00000554612.5:ENST00000334220.9:ENST00000238671.11:ENST00000556582.5:ENST00000555071.5:ENST00000555190.5:ENST00000555459.5:ENST00000555089.5:ENST00000626051.1:ENST00000554806.5:ENST00000555988.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	41	2	1.96602	3.3744750000000003	4.78293	0.0426807	0.00292033	0.148082	0.0494641
chr17	3946221	3946316	6708680	0	-	0.452632	(0.44,0.476]	chr17	657176	7	INTRON	INTRON	ATP2A3	ENSG00000074370.18	ENST00000309890.11:ENST00000397041.8:ENST00000397035.7:ENST00000352011.7:ENST00000359983.7:ENST00000397043.7	protein_coding	protein_coding	protein_coding	protein_coding	2	41	2	1.96602	3.3744750000000003	4.78293	0.0426807	0.00292033	0.148082	0.0494641
chr1	25486394	25486493	48511	0	+	0.30303	(0.28,0.32]	chr1	5963	2	INTRON	INTRON	MACO1	ENSG00000204178.11	ENST00000399766.7:ENST00000374343.5:ENST00000647928.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	33	2	2.60656	3.37435	4.14214	0.0579756	0.0256827	0.167723	0.133676
chr1	160321348	160321446	572093	0	-	0.306122	(0.28,0.32]	chr1	69341	69	INTRON	INTRON	COPA	ENSG00000122218.17	ENST00000241704.8:ENST00000696204.1:ENST00000696203.1:ENST00000696202.1:ENST00000649963.1:ENST00000696208.1:ENST00000696207.1:ENST00000696206.1:ENST00000649676.1:ENST00000368069.7:ENST00000647693.1:ENST00000649787.1:ENST00000650154.1:ENST00000647799.1:ENST00000648805.1:ENST00000647683.1:ENST00000649231.1:ENST00000648501.1:ENST00000696209.1:ENST00000696210.1:ENST00000696211.1:ENST00000647899.1:ENST00000696212.1:ENST00000696214.1:ENST00000696213.1:ENST00000696215.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	33	2	2.60656	3.37435	4.14214	0.0579756	0.0256827	0.167723	0.133676
chr17	21035645	21035745	6743095	0	-	0.32	(0.28,0.32]	chr17	662067	66	INTRON	INTRON	USP22	ENSG00000124422.12	ENST00000261497.9:ENST00000537526.6:ENST00000455117.6:ENST00000579645.5:ENST00000476111.5:ENST00000584538.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	33	2	2.60656	3.37435	4.14214	0.0579756	0.0256827	0.167723	0.133676
chr17	31942271	31942370	6595729	0	+	0.282828	(0.28,0.32]	chr17	641548	14	INTRON	INTRON	SUZ12	ENSG00000178691.11	ENST00000322652.10:ENST00000580398.1	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	2.60656	3.37435	4.14214	0.0579756	0.0256827	0.167723	0.133676
chr3	179572959	179573050	1567556	0	+	0.318681	(0.28,0.32]	chr3	162185	2	SS3_PROX	SS3_PROX:INTRON	ACTL6A	ENSG00000136518.17	ENST00000450518.6:ENST00000392662.5:ENST00000468767.6:ENST00000429709.7:ENST00000494843.5:ENST00000487978.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	33	2	2.60656	3.37435	4.14214	0.0579756	0.0256827	0.167723	0.133676
chr8	127796171	127796271	3860058	0	+	0.31	(0.28,0.32]	chr8	355379	1	SS5_PROX	SS5_PROX:INTRON	PVT1	ENSG00000249859.13	ENST00000667305.1:ENST00000690350.1:ENST00000653522.1:ENST00000664214.1:ENST00000664139.1:ENST00000661830.1:ENST00000657289.1:ENST00000504719.7:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000656880.1:ENST00000660200.1:ENST00000669132.1:ENST00000657211.1:ENST00000653845.1:ENST00000517525.2:ENST00000665856.1:ENST00000651587.1:ENST00000692980.1:ENST00000666353.1:ENST00000657183.1:ENST00000654324.1:ENST00000658556.1:ENST00000657693.1:ENST00000666080.1:ENST00000667539.1:ENST00000521951.1:ENST00000524165.6:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000664293.1:ENST00000657297.1:ENST00000662410.1:ENST00000670795.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000654091.1:ENST00000523328.6:ENST00000657356.1:ENST00000523427.2:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000662061.1:ENST00000667204.1:ENST00000656491.1:ENST00000667714.1:ENST00000654105.1:ENST00000665721.1:ENST00000518528.2:ENST00000669416.1:ENST00000660438.1:ENST00000661160.1:ENST00000659326.1:ENST00000665246.1:ENST00000657384.1:ENST00000666842.1:ENST00000517790.2:ENST00000522963.6:ENST00000654369.1:ENST00000661625.1:ENST00000657596.1:ENST00000664995.1:ENST00000656532.1:ENST00000656168.1:ENST00000661988.1:ENST00000657517.1:ENST00000670714.1:ENST00000669951.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000656693.1:ENST00000668123.1:ENST00000666776.1:ENST00000664299.1:ENST00000669272.1:ENST00000659912.1:ENST00000670532.1:ENST00000660896.1:ENST00000667149.1:ENST00000656396.1:ENST00000523068.2	lncRNA	lncRNA	lncRNA	lncRNA	1	33	2	2.60656	3.37435	4.14214	0.0579756	0.0256827	0.167723	0.133676
chr1	23082584	23082683	44416	0	+	0.30303	(0.28,0.32]	chr1	5337	2	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	KDM1A	ENSG00000004487.18	ENST00000692214.1:ENST00000686934.1:ENST00000689853.1:ENST00000465864.2:ENST00000691256.1:ENST00000688122.1:ENST00000692056.1:ENST00000692853.1:ENST00000689366.1:ENST00000686270.1:ENST00000685102.1:ENST00000690627.1:ENST00000686771.1:ENST00000692209.1:ENST00000686339.1:ENST00000691813.1:ENST00000693156.1:ENST00000688235.1:ENST00000692975.1:ENST00000687202.1:ENST00000691682.1:ENST00000691404.1:ENST00000356634.7:ENST00000400181.9:ENST00000689677.1:ENST00000686793.1:ENST00000689971.1:ENST00000688943.1:ENST00000690391.1:ENST00000494920.1:ENST00000685243.1:ENST00000690907.1:ENST00000602503.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	54	2	1.94591	3.37423	4.80255	0.0228482	0.0137406	0.125519	0.0949306
chr11	61301313	61301407	4956153	0	-	0.5	(0.476,0.515]	chr11	465664	5	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	DDB1	ENSG00000167986.15	ENST00000301764.12:ENST00000680367.1:ENST00000681803.1:ENST00000680717.1:ENST00000679712.1:ENST00000680357.1:ENST00000680075.1:ENST00000679588.1:ENST00000680602.1:ENST00000680881.1:ENST00000681188.1:ENST00000535283.6:ENST00000680452.1:ENST00000681935.1:ENST00000680250.1:ENST00000680959.1:ENST00000681815.1:ENST00000681580.1:ENST00000680345.1:ENST00000451943.6:ENST00000545894.1:ENST00000540166.5:ENST00000538470.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	43	2	2.31726	3.374095	4.43093	0.015077	0.00931369	0.0994339	0.0855292
chr7	32500291	32500391	3303281	0	+	0.34	(0.32,0.35]	chr7	306758	41	INTRON	INTRON	AVL9	ENSG00000105778.20	ENST00000485228.1:ENST00000318709.9:ENST00000459629.1:ENST00000409301.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	73	2	2.99125	3.374095	3.75694	0.00958447	3.37248e-4	0.0820838	0.0163178
chr2	43896997	43897094	1109569	0	-	0.319588	(0.28,0.32]	chr2	118950	4	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	LRPPRC	ENSG00000138095.20	ENST00000260665.12:ENST00000682612.1:ENST00000684454.1:ENST00000682308.1:ENST00000683459.1:ENST00000683623.1:ENST00000683002.1:ENST00000683125.1:ENST00000683994.1:ENST00000684619.1:ENST00000683833.1:ENST00000682546.1:ENST00000683080.1:ENST00000681993.1:ENST00000682585.1:ENST00000683220.1:ENST00000683796.1:ENST00000682607.1:ENST00000683590.1:ENST00000684306.1:ENST00000683213.1:ENST00000683409.1:ENST00000684418.1:ENST00000682779.1:ENST00000684433.1:ENST00000682885.1:ENST00000419884.6:ENST00000684743.1:ENST00000463456.5:ENST00000683346.1:ENST00000683072.1:ENST00000682303.1:ENST00000683329.1:ENST00000683096.1:ENST00000682933.1:ENST00000684383.1:ENST00000682480.1:ENST00000684290.1:ENST00000682434.1:ENST00000472420.6:ENST00000684341.1:ENST00000682595.1:ENST00000483489.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	49	2	1.91611	3.3738799999999998	4.83165	0.0539102	0.00527257	0.164153	0.0656295
chr12	50455459	50455559	5136896	0	+	0.35	(0.32,0.35]	chr12	484429	6	INTRON	INTRON	LARP4	ENSG00000161813.23	ENST00000293618.12:ENST00000429001.7:ENST00000398473.7:ENST00000522085.5:ENST00000518444.5:ENST00000518561.5:ENST00000347328.9:ENST00000520064.2	protein_coding	protein_coding	protein_coding	protein_coding	8	218	2	2.94598	3.37385	3.80172	3.35864e-5	2.7609e-5	0.00488303	0.00415116
chr4	73207792	73207892	2160316	0	-	0.36	(0.35,0.378]	chr4	212794	299	INTRON	INTRON	ANKRD17	ENSG00000132466.20	ENST00000358602.9:ENST00000558247.5:ENST00000330838.10:ENST00000509867.6:ENST00000561029.1:ENST00000559367.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	147	2	2.97949	3.37378	3.76807	4.02507e-4	1.44997e-5	0.0185763	0.0028542
chrX	123999768	123999868	7717133	0	+	0.45	(0.44,0.476]	chrX	789462	360	INTRON	INTRON	STAG2	ENSG00000101972.20	ENST00000394477.5:ENST00000218089.13:ENST00000455404.5:ENST00000483575.5:ENST00000687810.1:ENST00000687071.1:ENST00000469481.1:ENST00000458700.5:ENST00000371160.5:ENST00000435103.5:ENST00000687852.1:ENST00000371145.8:ENST00000692982.1:ENST00000371157.7:ENST00000691035.1:ENST00000686802.1:ENST00000691383.1:ENST00000686127.1:ENST00000371144.7:ENST00000458176.5:ENST00000466748.5:ENST00000471107.1:ENST00000428941.5:ENST00000435215.5:ENST00000394478.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	52	2	1.54868	3.37374	5.1988	0.0457575	0.00151532	0.164677	0.0352794
chr22	19481345	19481445	7476847	0	+	0.33	(0.32,0.35]	chr22	762394	3	SS5_PROX	SS5_PROX:INTRON	CDC45	ENSG00000093009.11	ENST00000407835.6:ENST00000455750.6:ENST00000491520.5:ENST00000437685.6:ENST00000483431.5:ENST00000438587.6:ENST00000672837.1:ENST00000263201.7:ENST00000404724.7:ENST00000487669.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	76	2	3.07975	3.37371	3.66767	0.00554235	8.30614e-4	0.0674105	0.0266389
chr17	40410509	40410608	6768296	0	-	0.353535	(0.35,0.378]	chr17	665968	15	INTRON	INTRON	TOP2A	ENSG00000131747.15	ENST00000423485.6	protein_coding	protein_coding	protein_coding	protein_coding	3	91	2	3.26804	3.373685	3.47933	0.0015613	2.47065e-4	0.0360352	0.0139149
chr10	97750722	97750798	4505431	0	+	0.394737	(0.378,0.408]	chr10	414806	3	SS5_PROX	SS5_PROX:INTRON	ZFYVE27	ENSG00000155256.18	ENST00000337540.11:ENST00000370613.7:ENST00000370610.7:ENST00000357540.8:ENST00000393677.8:ENST00000423811.3:ENST00000684270.1:ENST00000359980.5:ENST00000481956.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	32	2	2.53503	3.373645	4.21226	0.0319942	0.0177403	0.13174	0.11319
chrX	124040300	124040399	7717546	0	+	0.323232	(0.32,0.35]	chrX	789512	23	INTRON	INTRON	STAG2	ENSG00000101972.20	ENST00000218089.13:ENST00000455404.5:ENST00000483575.5:ENST00000687810.1:ENST00000687071.1:ENST00000469481.1:ENST00000371160.5:ENST00000435103.5:ENST00000687852.1:ENST00000371145.8:ENST00000692982.1:ENST00000371157.7:ENST00000691035.1:ENST00000686802.1:ENST00000691383.1:ENST00000686127.1:ENST00000371144.7:ENST00000458176.5:ENST00000466748.5:ENST00000471107.1:ENST00000428941.5:ENST00000435215.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	64	2	1.46273	3.373615	5.2845	0.0451962	0.00240071	0.163755	0.0440612
chr15	29817934	29818034	6125376	0	-	0.41	(0.408,0.44]	chr15	583580	169	INTRON	INTRON	TJP1	ENSG00000104067.17	ENST00000346128.10:ENST00000614355.5:ENST00000400011.6:ENST00000356107.11:ENST00000677774.1:ENST00000545208.6:ENST00000495972.6:ENST00000473741.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	38	2	2.14732	3.3735549999999996	4.59979	0.0237354	0.0109537	0.129075	0.0873034
chr17	82816830	82816930	6694862	0	+	0.41	(0.408,0.44]	chr17	654903	15	INTRON	INTRON	TBCD	ENSG00000141556.22	ENST00000682479.1:ENST00000682722.1:ENST00000684464.1:ENST00000684544.1:ENST00000681983.1:ENST00000684361.1:ENST00000683184.1:ENST00000683282.1:ENST00000684408.1:ENST00000355528.9:ENST00000683444.1:ENST00000684776.1:ENST00000683041.1:ENST00000684760.1:ENST00000684349.1:ENST00000682213.1:ENST00000683009.1:ENST00000682921.1:ENST00000539345.6:ENST00000684000.1:ENST00000684188.1:ENST00000684429.1:ENST00000682610.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	38	2	2.14732	3.3735549999999996	4.59979	0.0237354	0.0109537	0.129075	0.0873034
chr6	84062892	84062992	2912943	0	+	0.44	(0.408,0.44]	chr6	275251	1	CDS	CDS:EXON_MRNA	MRAP2	ENSG00000135324.6	ENST00000257776.5	protein_coding	protein_coding	protein_coding	protein_coding	2	38	2	2.14732	3.3735549999999996	4.59979	0.0237354	0.0109537	0.129075	0.0873034
chr12	122892056	122892155	5442538	0	-	0.363636	(0.35,0.378]	chr12	520625	20	INTRON	INTRON	VPS37B	ENSG00000139722.7	ENST00000267202.7:ENST00000535765.5	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	2.1617	3.3735350000000004	4.58537	0.0771502	0.00703328	0.196285	0.0754576
chr20	62917687	62917786	7362366	0	-	0.373737	(0.35,0.378]	chr20	751210	29	INTRON	INTRON	DIDO1	ENSG00000101191.17	ENST00000266070.8:ENST00000395343.6:ENST00000395340.5:ENST00000370371.8:ENST00000370368.5:ENST00000354665.8	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	2.1617	3.3735350000000004	4.58537	0.0771502	0.00703328	0.196285	0.0754576
chr3	48022915	48023015	1686840	0	-	0.37	(0.35,0.378]	chr3	172280	66	INTRON	INTRON	MAP4	ENSG00000047849.22	ENST00000395734.7:ENST00000426837.6:ENST00000360240.10:ENST00000423088.5:ENST00000439356.2:ENST00000468075.2	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	2.1617	3.3735350000000004	4.58537	0.0771502	0.00703328	0.196285	0.0754576
chr3	133647509	133647607	1821623	0	-	0.357143	(0.35,0.378]	chr3	183331	28	INTRON	INTRON	TOPBP1	ENSG00000163781.14	ENST00000260810.10:ENST00000642236.1:ENST00000511439.5:ENST00000509162.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	32	2	2.1617	3.3735350000000004	4.58537	0.0771502	0.00703328	0.196285	0.0754576
chr14	105227231	105227326	5973607	0	-	0.494737	(0.476,0.515]	chr14	568006	6	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	BRF1	ENSG00000185024.18	ENST00000547530.7:ENST00000379937.6:ENST00000392557.8:ENST00000446501.6:ENST00000551787.5:ENST00000619151.4:ENST00000327359.7:ENST00000440513.7:ENST00000547562.5:ENST00000549655.5:ENST00000552127.5:ENST00000546417.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	38	2	2.13304	3.3735299999999997	4.61402	0.024866	0.00947755	0.132101	0.0817766
chr1	193250809	193250907	285925	0	+	0.326531	(0.32,0.35]	chr1	32871	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	CDC73	ENSG00000134371.14	ENST00000643006.1:ENST00000367435.5:ENST00000650197.1:ENST00000648071.1:ENST00000635846.1:ENST00000649613.1:ENST00000477868.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	99	2	2.53107	3.37352	4.21597	0.00860484	3.16804e-5	0.0784134	0.00449886
chr1	224427804	224427903	645372	0	-	0.252525	[0,0.28]	chr1	76289	27	INTRON	INTRON	WDR26	ENSG00000162923.17	ENST00000414423.9:ENST00000678917.1:ENST00000651911.2:ENST00000678879.1:ENST00000486652.5:ENST00000678555.1:ENST00000443112.6:ENST00000489825.5:ENST00000477425.1:ENST00000445239.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	49	2	2.20073	3.373415	4.5461	0.0365918	0.0235708	0.138959	0.128907
chr6	157431740	157431840	3012048	0	+	0.55	(0.515,0.57]	chr6	281268	491	INTRON	INTRON	ZDHHC14	ENSG00000175048.17	ENST00000414563.6:ENST00000359775.10	protein_coding	protein_coding	protein_coding	protein_coding	2	37	2	2.15051	3.373405	4.5963	0.0238113	0.00370287	0.118889	0.0561162
chr14	95534113	95534210	5965460	0	-	0.556701	(0.515,0.57]	chr14	566636	6	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	SNHG10	ENSG00000247092.8	ENST00000667310.2:ENST00000671157.2:ENST00000667668.1:ENST00000658932.2:ENST00000500370.2:ENST00000554169.2:ENST00000693219.1:ENST00000685307.1:ENST00000691619.1:ENST00000689247.1:ENST00000687146.1:ENST00000660378.2:ENST00000689758.1:ENST00000690868.1:ENST00000693520.1:ENST00000685703.1:ENST00000690961.1:ENST00000689823.1:ENST00000689442.1:ENST00000688138.1:ENST00000693718.1:ENST00000688462.1:ENST00000553559.1:ENST00000555866.5:ENST00000691606.1:ENST00000688965.1	lncRNA	lncRNA	lncRNA	lncRNA	9	190	2	3.00855	3.373305	3.73806	8.31213e-6	2.15507e-6	0.00207935	0.0010225
chr8	55948223	55948319	3755024	0	+	0.5	(0.476,0.515]	chr8	349273	1	INTRON	INTRON	LYN	ENSG00000254087.8	ENST00000519728.6:ENST00000520220.6:ENST00000520050.1	protein_coding	protein_coding	protein_coding	protein_coding	2	38	2	1.8388	3.373205	4.90761	0.0564473	0.00386428	0.184423	0.0542786
chr1	235406482	235406582	340065	0	+	0.41	(0.408,0.44]	chr1	39557	45	INTRON	INTRON	TBCE	ENSG00000285053.1:ENSG00000284770.2	ENST00000644055.1:ENST00000645655.1:ENST00000647428.1:ENST00000643418.1:ENST00000646624.1:ENST00000647186.1:ENST00000646528.1:ENST00000645351.1:ENST00000643410.1:ENST00000645205.1:ENST00000645836.1:ENST00000642503.1:ENST00000646281.1:ENST00000645069.1:ENST00000644680.1:ENST00000645578.1:ENST00000642431.1:ENST00000644604.1:ENST00000651186.1:ENST00000643125.1:ENST00000406207.5:ENST00000642463.1:ENST00000645899.1:ENST00000647233.1:ENST00000642926.1:ENST00000644578.1:ENST00000647418.1:ENST00000645372.1:ENST00000645582.1:ENST00000643994.1:ENST00000647407.1:ENST00000642610.2:ENST00000644037.1:ENST00000646463.1:ENST00000366601.8:ENST00000643524.1:ENST00000646536.1:ENST00000643142.1:ENST00000644838.1:ENST00000646286.1:ENST00000646186.1:ENST00000643615.1:ENST00000543662.4:ENST00000646848.1:ENST00000647332.1:ENST00000647489.1:ENST00000644625.1:ENST00000646384.1:ENST00000645551.1:ENST00000646821.1:ENST00000472011.6:ENST00000643238.1:ENST00000646104.1:ENST00000645662.1:ENST00000643993.1:ENST00000645964.1:ENST00000642339.1:ENST00000644217.1:ENST00000642372.1:ENST00000646929.1:ENST00000644265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	38	2	1.85305	3.3731600000000004	4.89327	0.0543543	0.00458906	0.182243	0.0595107
chr11	57419776	57419875	4953376	0	-	0.414141	(0.408,0.44]	chr11	464933	15	INTRON	INTRON	ENSG00000254979:SLC43A3	ENSG00000254979.5:ENSG00000134802.18	ENST00000534081.5:ENST00000395124.6:ENST00000395123.6:ENST00000352187.5:ENST00000529554.5:ENST00000533524.5:ENST00000530005.5:ENST00000528098.5:ENST00000529113.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	38	2	1.85305	3.3731600000000004	4.89327	0.0543543	0.00458906	0.182243	0.0595107
chr2	235498146	235498246	1041376	0	+	0.44	(0.408,0.44]	chr2	111217	29	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	38	2	1.85305	3.3731600000000004	4.89327	0.0543543	0.00458906	0.182243	0.0595107
chr5	154388610	154388707	2525768	0	+	0.381443	(0.378,0.408]	chr5	241509	23	UTR3	UTR3:EXON_MRNA:INTRON	GALNT10	ENSG00000164574.16	ENST00000425427.6:ENST00000297107.11:ENST00000520647.5:ENST00000377661.2:ENST00000519544.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	42	2	1.76032	3.373095	4.98587	0.0721577	0.00152268	0.187433	0.0360297
chr7	77028814	77028913	3341857	0	+	0.525253	(0.515,0.57]	chr7	311279	32	INTRON	INTRON	DTX2P1-UPK3BP1-PMS2P11	ENSG00000265479.7	ENST00000579700.1	lncRNA	lncRNA	lncRNA	lncRNA	4	96	2	3.3102	3.37309	3.43598	1.88344e-4	7.05043e-5	0.012549	0.00694412
chr7	92207961	92208060	3569755	0	-	0.282828	(0.28,0.32]	chr7	332510	35	INTRON	INTRON	ENSG00000289027:KRIT1	ENSG00000289027.1:ENSG00000001631.17	ENST00000692281.1:ENST00000693096.1:ENST00000688180.1:ENST00000394507.5:ENST00000692807.1:ENST00000340022.6:ENST00000394505.7:ENST00000486261.5:ENST00000458177.7:ENST00000684808.1:ENST00000444960.6:ENST00000691239.1:ENST00000686094.1:ENST00000686527.1:ENST00000690529.1:ENST00000689411.1:ENST00000688665.1:ENST00000692157.1:ENST00000686043.1:ENST00000690720.1:ENST00000692690.1:ENST00000690908.1:ENST00000691827.1:ENST00000690751.1:ENST00000425073.2:ENST00000687876.1:ENST00000690904.1:ENST00000688781.1:ENST00000686785.1:ENST00000689556.1:ENST00000688314.1:ENST00000688404.1:ENST00000690292.1:ENST00000687135.1:ENST00000689082.1:ENST00000686149.1:ENST00000475770.6:ENST00000454017.6:ENST00000692361.1:ENST00000689778.1:ENST00000686619.1:ENST00000688766.1:ENST00000688580.1:ENST00000693563.1:ENST00000685431.1:ENST00000689539.1:ENST00000412043.6:ENST00000394503.6:ENST00000433016.6:ENST00000445516.2:ENST00000686233.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	51	2	2.14002	3.3730599999999997	4.6061	0.0304107	0.0102724	0.130461	0.089002
chr3	136150079	136150176	1823775	0	-	0.350515	(0.35,0.378]	chr3	183511	13	UTR3	UTR3:EXON_MRNA	MSL2	ENSG00000174579.4	ENST00000309993.3	protein_coding	protein_coding	protein_coding	protein_coding	3	48	2	1.58862	3.372925	5.15723	0.0615516	0.00272706	0.193423	0.0467523
chr3	141911059	141911159	1526423	0	+	0.37	(0.35,0.378]	chr3	159025	34	INTRON	INTRON	ATP1B3	ENSG00000069849.11	ENST00000475483.5:ENST00000465172.5:ENST00000286371.8:ENST00000466678.5:ENST00000462082.1:ENST00000495216.1:ENST00000482635.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	48	2	1.58862	3.372925	5.15723	0.0615516	0.00272706	0.193423	0.0467523
chr2	87468152	87468252	826048	0	+	0.31	(0.28,0.32]	chr2	92409	97	INTRON	INTRON	CYTOR:ENSG00000284879	ENSG00000222041.12:ENSG00000284879.1	ENST00000642796.1:ENST00000643589.1:ENST00000642451.1:ENST00000646386.1:ENST00000644478.1:ENST00000409139.6:ENST00000331944.10:ENST00000644125.1:ENST00000643743.1:ENST00000644577.1:ENST00000643276.1:ENST00000409898.2:ENST00000419680.6:ENST00000645257.1:ENST00000644976.1:ENST00000643070.1:ENST00000646855.1:ENST00000414584.1:ENST00000455131.5:ENST00000646636.1:ENST00000642293.1:ENST00000423846.5:ENST00000644040.1:ENST00000645138.1	lncRNA	lncRNA	lncRNA	lncRNA	3	108	2	2.77917	3.37286	3.96655	0.00285651	2.88499e-4	0.0494641	0.0156418
chr13	20024971	20025068	5453099	0	+	0.257732	[0,0.28]	chr13	522479	7	EXON_MRNA	EXON_MRNA:INTRON	ZMYM2	ENSG00000121741.17	ENST00000382874.6:ENST00000610343.5:ENST00000382871.3:ENST00000382883.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	75	2	1.53476	3.37265	5.21054	0.0398264	0.00758653	0.161534	0.0749063
chr11	87179387	87179486	4844230	0	+	0.313131	(0.28,0.32]	chr11	451862	216	INTRON	INTRON	TMEM135	ENSG00000166575.17	ENST00000340353.11:ENST00000305494.6:ENST00000532959.5:ENST00000525018.5	protein_coding	protein_coding	protein_coding	protein_coding	2	44	2	2.08149	3.37254	4.66359	0.031124	0.0193496	0.143644	0.108861
chr20	3913732	3913832	7227148	0	+	0.31	(0.28,0.32]	chr20	734510	7	INTRON	INTRON	PANK2	ENSG00000125779.24	ENST00000497424.5:ENST00000316562.9:ENST00000495692.5:ENST00000610179.7:ENST00000643504.2:ENST00000336066.8:ENST00000646394.1:ENST00000621507.1:ENST00000464452.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	44	2	2.08149	3.37254	4.66359	0.031124	0.0193496	0.143644	0.108861
chr11	14479368	14479468	4918115	0	-	0.32	(0.28,0.32]	chr11	460914	4	SS5_PROX	SS5_PROX:INTRON	COPB1	ENSG00000129083.13	ENST00000249923.7:ENST00000439561.7:ENST00000534234.5	protein_coding	protein_coding	protein_coding	protein_coding	4	61	2	1.64429	3.37249	5.10069	0.0365539	0.00610574	0.153932	0.0676501
chr12	6605285	6605383	5259655	0	-	0.387755	(0.378,0.408]	chr12	500839	23	INTRON	INTRON	CHD4	ENSG00000111642.16	ENST00000645022.1:ENST00000544040.7:ENST00000544484.6:ENST00000357008.7:ENST00000642810.1:ENST00000643335.1:ENST00000646806.1:ENST00000644137.1:ENST00000642879.1:ENST00000645645.1:ENST00000642594.1:ENST00000646268.1:ENST00000645095.1:ENST00000645005.1:ENST00000644801.1:ENST00000644289.1:ENST00000545942.6:ENST00000545584.2:ENST00000644132.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	31	2	2.13703	3.37237	4.60771	0.0797592	0.00567576	0.19979	0.0678837
chr6	15408224	15408324	2824570	0	+	0.39	(0.378,0.408]	chr6	265198	336	INTRON	INTRON	JARID2	ENSG00000008083.14	ENST00000341776.7:ENST00000397311.4	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	2.13703	3.37237	4.60771	0.0797592	0.00567576	0.19979	0.0678837
chr9	109039327	109039425	4311783	0	-	0.397959	(0.378,0.408]	chr9	396313	1	INTRON	INTRON	TMEM245	ENSG00000106771.13	ENST00000374586.8:ENST00000413712.6:ENST00000491854.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	31	2	2.13703	3.37237	4.60771	0.0797592	0.00567576	0.19979	0.0678837
chr16	10386771	10386864	6286281	0	+	0.365591	(0.35,0.378]	chr16	601953	8	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	ATF7IP2	ENSG00000166669.14	ENST00000564797.5:ENST00000396559.5:ENST00000396560.6:ENST00000562527.5:ENST00000561932.5:ENST00000566316.5:ENST00000543967.5:ENST00000562102.6:ENST00000535850.5:ENST00000569900.5:ENST00000569939.5:ENST00000562396.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	245	2	2.79365	3.37227	3.95089	1.22478e-4	5.43074e-7	0.00994509	3.96157e-4
chr11	5303043	5303143	4896239	0	-	0.39	(0.378,0.408]	chr11	459146	12	INTRON	INTRON	HBG2:ENSG00000239920:HBE1	ENSG00000196565.15:ENSG00000239920.2:ENSG00000213931.7	ENST00000380252.6:ENST00000380259.7:ENST00000646569.1:ENST00000643199.1:ENST00000292896.3:ENST00000380237.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	31	2	2.2259	3.37222	4.51854	0.0662381	0.00748824	0.181924	0.0772645
chr4	145157749	145157845	2255264	0	-	0.385417	(0.378,0.408]	chr4	220223	14	INTRON	INTRON	OTUD4	ENSG00000164164.17	ENST00000455611.6:ENST00000454497.6:ENST00000447906.8:ENST00000514973.5:ENST00000505976.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	31	2	2.2259	3.37222	4.51854	0.0662381	0.00748824	0.181924	0.0772645
chr6	57512545	57512645	2881062	0	+	0.38	(0.378,0.408]	chr6	273427	47	INTRON	INTRON	PRIM2	ENSG00000146143.19	ENST00000672107.1:ENST00000615550.5:ENST00000470638.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	31	2	2.2259	3.37222	4.51854	0.0662381	0.00748824	0.181924	0.0772645
chr8	17971729	17971828	3708249	0	+	0.424242	(0.408,0.44]	chr8	343940	16	INTRON	INTRON	PCM1	ENSG00000078674.19	ENST00000325083.13:ENST00000519253.5:ENST00000524226.5:ENST00000523540.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	63	2	3.10641	3.37213	3.63785	0.00555646	4.70012e-4	0.0648867	0.0196294
chr22	42996459	42996558	7598166	0	-	0.474747	(0.44,0.476]	chr22	778200	23	INTRON	INTRON	PACSIN2	ENSG00000100266.19	ENST00000263246.8:ENST00000453643.5:ENST00000422336.5:ENST00000445706.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	100	2	2.96367	3.372065	3.78046	3.54249e-4	2.39417e-4	0.0174886	0.0136403
chr6	37849200	37849300	2857327	0	+	0.44	(0.408,0.44]	chr6	270225	288	INTRON	INTRON	ZFAND3	ENSG00000156639.12	ENST00000287218.9:ENST00000373391.6:ENST00000474522.5	protein_coding	protein_coding	protein_coding	protein_coding	3	85	2	3.37162	3.37203	3.37244	0.00208674	1.2469e-4	0.0411801	0.00953295
chr2	62204738	62204838	790087	0	+	0.22	[0,0.28]	chr2	88695	80	INTRON	INTRON	B3GNT2	ENSG00000170340.11	ENST00000301998.5	protein_coding	protein_coding	protein_coding	protein_coding	1	39	2	2.27119	3.371865	4.47254	0.070351	0.020991	0.184298	0.122348
chr1	10062143	10062243	19418	0	+	0.52	(0.515,0.57]	chr1	1838	281	INTRON	INTRON	UBE4B	ENSG00000130939.20	ENST00000672724.1:ENST00000253251.12:ENST00000343090.11:ENST00000377153.5	protein_coding	protein_coding	protein_coding	protein_coding	1	26	2	2.65834	3.37186	4.08538	0.0253843	0.0187418	0.12011	0.117523
chr1	154252536	154252632	227858	0	+	0.541667	(0.515,0.57]	chr1	26303	5	INTRON	INTRON	UBAP2L	ENSG00000143569.19	ENST00000343815.10:ENST00000271877.11:ENST00000613315.4:ENST00000428931.6:ENST00000361546.6	protein_coding	protein_coding	protein_coding	protein_coding	1	26	2	2.65834	3.37186	4.08538	0.0253843	0.0187418	0.12011	0.117523
chr10	63149270	63149369	4436141	0	+	0.525253	(0.515,0.57]	chr10	409219	26	INTRON	INTRON	NRBF2	ENSG00000148572.16	ENST00000435510.6:ENST00000277746.11	protein_coding	protein_coding	protein_coding	protein_coding	1	26	2	2.65834	3.37186	4.08538	0.0253843	0.0187418	0.12011	0.117523
chr17	16011343	16011442	6560659	0	+	0.525253	(0.515,0.57]	chr17	637699	44	INTRON	INTRON	TTC19	ENSG00000011295.16	ENST00000475723.5:ENST00000261647.10:ENST00000497842.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	26	2	2.65834	3.37186	4.08538	0.0253843	0.0187418	0.12011	0.117523
chr17	42999474	42999566	6613159	0	+	0.565217	(0.515,0.57]	chr17	644682	3	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPL27	ENSG00000131469.15	ENST00000589037.5:ENST00000253788.12:ENST00000593262.1:ENST00000588830.1:ENST00000589913.6:ENST00000590864.2:ENST00000586277.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	26	2	2.65834	3.37186	4.08538	0.0253843	0.0187418	0.12011	0.117523
chr2	30238997	30239096	725963	0	+	0.525253	(0.515,0.57]	chr2	83940	41	INTRON	INTRON	LBH	ENSG00000213626.13	ENST00000395323.9:ENST00000412933.5:ENST00000404397.5:ENST00000406087.5:ENST00000464412.5:ENST00000401506.1:ENST00000467242.1:ENST00000407930.2:ENST00000484150.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	26	2	2.65834	3.37186	4.08538	0.0253843	0.0187418	0.12011	0.117523
chr4	67743129	67743229	1965511	0	+	0.57	(0.515,0.57]	chr4	197326	104	INTRON	INTRON	UBA6-DT	ENSG00000248049.8	ENST00000656992.1:ENST00000500538.7:ENST00000665294.1:ENST00000667140.1:ENST00000663060.1:ENST00000660972.1:ENST00000502758.1	lncRNA	lncRNA	lncRNA	lncRNA	1	26	2	2.65834	3.37186	4.08538	0.0253843	0.0187418	0.12011	0.117523
chr6	38018959	38019059	2859026	0	+	0.52	(0.515,0.57]	chr6	270237	148	INTRON	INTRON	ZFAND3	ENSG00000156639.12	ENST00000287218.9:ENST00000373391.6:ENST00000474522.5:ENST00000373389.5	protein_coding	protein_coding	protein_coding	protein_coding	1	26	2	2.65834	3.37186	4.08538	0.0253843	0.0187418	0.12011	0.117523
chr7	151479495	151479594	3674519	0	-	0.565657	(0.515,0.57]	chr7	341189	17	INTRON	INTRON	RHEB	ENSG00000106615.10	ENST00000262187.10:ENST00000472642.5:ENST00000478470.5:ENST00000496004.5:ENST00000470370.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	26	2	2.65834	3.37186	4.08538	0.0253843	0.0187418	0.12011	0.117523
chr8	41959660	41959759	3940372	0	-	0.555556	(0.515,0.57]	chr8	361181	14	INTRON	INTRON	KAT6A	ENSG00000083168.11	ENST00000406337.6:ENST00000265713.8:ENST00000396930.4:ENST00000649817.1:ENST00000648335.1:ENST00000649827.1:ENST00000485568.5:ENST00000647809.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	26	2	2.65834	3.37186	4.08538	0.0253843	0.0187418	0.12011	0.117523
chr9	33333002	33333100	4109724	0	+	0.530612	(0.515,0.57]	chr9	374574	1	INTRON	INTRON	NFX1	ENSG00000086102.19	ENST00000379521.8:ENST00000379540.8:ENST00000318524.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	26	2	2.65834	3.37186	4.08538	0.0253843	0.0187418	0.12011	0.117523
chr15	28212983	28213083	6122926	0	-	0.52	(0.515,0.57]	chr15	583195	4	SS3_PROX	SS3_PROX:INTRON	HERC2	ENSG00000128731.18	ENST00000261609.13	protein_coding	protein_coding	protein_coding	protein_coding	3	73	2	2.82994	3.3716850000000003	3.91343	0.00168661	1.28574e-4	0.0381778	0.0103138
chr3	60226230	60226330	1711876	0	-	0.53	(0.515,0.57]	chr3	176138	1455	INTRON	INTRON	FHIT	ENSG00000189283.10	ENST00000492590.6:ENST00000476844.5:ENST00000468189.5:ENST00000488467.5	protein_coding	protein_coding	protein_coding	protein_coding	2	35	2	2.32836	3.37167	4.41498	0.0126662	0.0106866	0.0982897	0.0861859
chr12	100269986	100270085	5200541	0	+	0.555556	(0.515,0.57]	chr12	492117	18	INTRON	INTRON	SCYL2	ENSG00000136021.19	ENST00000549687.5:ENST00000360820.7:ENST00000548392.5:ENST00000635101.1:ENST00000550067.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	96	2	3.16037	3.371625	3.58288	4.09074e-4	2.88277e-5	0.0185763	0.00425384
chr16	212366	212466	6426017	0	-	0.53	(0.515,0.57]	chr16	617437	27	INTRON	INTRON	LUC7L	ENSG00000007392.17	ENST00000337351.8:ENST00000426094.5:ENST00000397783.5:ENST00000629543.2:ENST00000490762.5:ENST00000293872.13:ENST00000419516.5:ENST00000397780.5:ENST00000418978.5:ENST00000430864.5:ENST00000443357.5:ENST00000494366.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	96	2	3.16037	3.371625	3.58288	4.09074e-4	2.88277e-5	0.0185763	0.00425384
chr10	87910358	87910458	4483401	0	+	0.39	(0.378,0.408]	chr10	412570	159	INTRON	INTRON	PTEN	ENSG00000171862.12	ENST00000688308.1:ENST00000693560.1:ENST00000371953.8:ENST00000688158.1:ENST00000686459.1:ENST00000688922.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	42	2	1.8252	3.37148	4.91776	0.0619563	0.00196368	0.174514	0.0411469
chr6	105030577	105030676	2930587	0	+	0.383838	(0.378,0.408]	chr6	276116	37	INTRON	INTRON	LIN28B	ENSG00000187772.8	ENST00000635857.1:ENST00000637759.1:ENST00000345080.5	protein_coding	protein_coding	protein_coding	protein_coding	2	42	2	1.8252	3.37148	4.91776	0.0619563	0.00196368	0.174514	0.0411469
chr18	789376	789475	6940476	0	-	0.424242	(0.408,0.44]	chr18	686525	10	INTRON	INTRON	YES1	ENSG00000176105.14	ENST00000584307.5:ENST00000314574.5:ENST00000577611.1:ENST00000581960.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	58	2	1.49789	3.37145	5.24501	0.0390091	0.00137378	0.161009	0.0336718
chr11	47238395	47238491	4787989	0	+	0.53125	(0.515,0.57]	chr11	442897	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DDB2	ENSG00000134574.12	ENST00000256996.9:ENST00000378601.7:ENST00000612309.4:ENST00000617022.4:ENST00000616278.4:ENST00000378600.7:ENST00000378603.7:ENST00000617847.4:ENST00000614884.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	26	2	2.23241	3.371205	4.51	0.0581268	0.00809449	0.188651	0.0766625
chr12	119730830	119730930	5430774	0	-	0.54	(0.515,0.57]	chr12	518878	2	SS3_PROX	SS3_PROX:INTRON	CIT	ENSG00000122966.17	ENST00000392521.7:ENST00000261833.11:ENST00000677438.1:ENST00000677993.1:ENST00000678087.1:ENST00000678652.1:ENST00000676849.1:ENST00000678677.1:ENST00000545913.6:ENST00000679249.1:ENST00000679120.1:ENST00000677812.1:ENST00000677849.1:ENST00000679285.1:ENST00000677738.1:ENST00000676693.1:ENST00000678494.1:ENST00000612548.4:ENST00000392520.2:ENST00000537607.5:ENST00000676833.1:ENST00000536325.1:ENST00000677927.1:ENST00000546026.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	26	2	2.23241	3.371205	4.51	0.0581268	0.00809449	0.188651	0.0766625
chr15	95677203	95677302	6108739	0	+	0.535354	(0.515,0.57]	chr15	581771	239	INTRON	INTRON	ENSG00000275016	ENSG00000275016.5	ENST00000612595.2:ENST00000661571.1:ENST00000614344.5:ENST00000667344.1:ENST00000666682.1:ENST00000663174.1:ENST00000661536.1:ENST00000615194.1:ENST00000667774.1:ENST00000616588.4:ENST00000656202.1:ENST00000666386.1:ENST00000611285.1	lncRNA	lncRNA	lncRNA	lncRNA	1	26	2	2.23241	3.371205	4.51	0.0581268	0.00809449	0.188651	0.0766625
chr20	47529006	47529106	7281268	0	+	0.54	(0.515,0.57]	chr20	740469	266	INTRON	INTRON	NCOA3	ENSG00000124151.19	ENST00000371998.8:ENST00000372004.7:ENST00000371997.3	protein_coding	protein_coding	protein_coding	protein_coding	1	26	2	2.23241	3.371205	4.51	0.0581268	0.00809449	0.188651	0.0766625
chr22	23237520	23237620	7483777	0	+	0.56	(0.515,0.57]	chr22	763541	378	INTRON	INTRON	BCR	ENSG00000186716.21	ENST00000479188.5:ENST00000359540.7:ENST00000305877.13:ENST00000463770.5:ENST00000487679.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	26	2	2.23241	3.371205	4.51	0.0581268	0.00809449	0.188651	0.0766625
chr6	169670878	169670957	3266812	0	-	0.544304	(0.515,0.57]	chr6	303236	1	CDS	CDS:EXON_MRNA:SS3_PROX:INTRON	WDR27	ENSG00000184465.16	ENST00000448612.6:ENST00000648472.1:ENST00000423258.5:ENST00000647790.1:ENST00000647873.1:ENST00000649303.1:ENST00000647889.1:ENST00000648017.1:ENST00000650296.1:ENST00000546953.1:ENST00000649806.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	26	2	2.23241	3.371205	4.51	0.0581268	0.00809449	0.188651	0.0766625
chr9	105740386	105740486	4183003	0	+	0.52	(0.515,0.57]	chr9	381513	174	INTRON	INTRON	TMEM38B	ENSG00000095209.12	ENST00000374692.8:ENST00000374688.5:ENST00000435034.5:ENST00000451560.1	protein_coding	protein_coding	protein_coding	protein_coding	1	26	2	2.23241	3.371205	4.51	0.0581268	0.00809449	0.188651	0.0766625
chr16	24795119	24795219	6329877	0	+	0.43	(0.408,0.44]	chr16	605975	4	SS5_PROX	SS5_PROX:INTRON	TNRC6A	ENSG00000090905.19	ENST00000395799.8:ENST00000315183.11:ENST00000491718.5:ENST00000450465.6:ENST00000568903.5:ENST00000567232.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	52	2	1.55035	3.371185	5.19202	0.0455214	0.0016671	0.164236	0.0369207
chr9	4853241	4853341	4095482	0	+	0.48	(0.476,0.515]	chr9	373212	33	INTRON	INTRON	RCL1	ENSG00000120158.12	ENST00000381750.9:ENST00000442869.5:ENST00000381730.5:ENST00000381728.5:ENST00000448872.6	protein_coding	protein_coding	protein_coding	protein_coding	6	128	2	2.11109	3.37118	4.63127	0.00438713	1.64137e-6	0.0585064	7.75014e-4
chr16	89647878	89647978	6543681	0	-	0.71	(0.57,1]	chr16	634307	3	CDS	CDS:UTR3:EXON_MRNA:INTRON	CHMP1A	ENSG00000131165.16	ENST00000675909.1:ENST00000397901.8:ENST00000676355.1:ENST00000675161.1:ENST00000676402.1:ENST00000675016.1:ENST00000551981.6:ENST00000675309.1:ENST00000675952.1:ENST00000676342.1:ENST00000535997.7:ENST00000674799.1:ENST00000675536.1:ENST00000549328.2:ENST00000675778.1:ENST00000676118.1:ENST00000675076.1:ENST00000549139.5:ENST00000550102.5:ENST00000548650.1:ENST00000547614.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	35	2	3.183	3.3711	3.5592	0.00254356	4.21089e-4	0.0448135	0.0183576
chr16	21446279	21446378	6460778	0	-	0.30303	(0.28,0.32]	chr16	623226	57	INTRON	INTRON	NPIPB3	ENSG00000169246.16	ENST00000545358.5:ENST00000543368.1:ENST00000544154.1	protein_coding	retained_intron	protein_coding	retained_intron:processed_transcript	6	195	2	3.09601	3.37099	3.64597	1.00082e-4	6.21751e-5	0.00904854	0.00655892
chr7	111375273	111375373	3622235	0	-	0.31	(0.28,0.32]	chr7	337093	4114	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	78	2	3.23355	3.3709550000000004	3.50836	0.004869	0.00117393	0.0607461	0.0316446
chr1	8659536	8659635	372200	0	-	0.363636	(0.35,0.378]	chr1	43541	27	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000656437.1:ENST00000659924.1:ENST00000480342.5:ENST00000468247.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	32	2	2.24535	3.3708050000000003	4.49626	0.0647516	0.00917582	0.179192	0.0855292
chr2	61361054	61361153	1129446	0	-	0.353535	(0.35,0.378]	chr2	121448	100	INTRON	INTRON	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000453133.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	32	2	2.24535	3.3708050000000003	4.49626	0.0647516	0.00917582	0.179192	0.0855292
chr20	43707513	43707611	7276468	0	+	0.377551	(0.35,0.378]	chr20	739765	18	INTRON	INTRON	MYBL2	ENSG00000101057.16	ENST00000396863.8:ENST00000217026.5	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	2.24535	3.3708050000000003	4.49626	0.0647516	0.00917582	0.179192	0.0855292
chr21	37449646	37449745	7407058	0	+	0.373737	(0.35,0.378]	chr21	754891	189	INTRON	INTRON	DYRK1A	ENSG00000157540.22	ENST00000646523.1:ENST00000647425.1:ENST00000647188.2:ENST00000647504.1:ENST00000644942.1:ENST00000338785.8:ENST00000643624.1:ENST00000643551.1:ENST00000426672.6:ENST00000398960.7:ENST00000646548.1:ENST00000645424.1:ENST00000643854.1:ENST00000455097.6:ENST00000642309.1:ENST00000645774.1:ENST00000398956.2	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	2.24535	3.3708050000000003	4.49626	0.0647516	0.00917582	0.179192	0.0855292
chr22	49854888	49854988	7543316	0	+	0.36	(0.35,0.378]	chr22	770840	5	INTRON	INTRON	ZBED4	ENSG00000100426.7	ENST00000216268.6	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	2.24535	3.3708050000000003	4.49626	0.0647516	0.00917582	0.179192	0.0855292
chr8	103059888	103059987	3821909	0	+	0.353535	(0.35,0.378]	chr8	353642	36	INTRON	INTRON	ATP6V1C1	ENSG00000155097.12	ENST00000395862.7:ENST00000518857.5:ENST00000518738.2:ENST00000521514.5:ENST00000521671.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	32	2	2.24535	3.3708050000000003	4.49626	0.0647516	0.00917582	0.179192	0.0855292
chr17	57316425	57316525	6633353	0	+	0.46	(0.44,0.476]	chr17	648024	57	INTRON	INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000581776.5:ENST00000674961.1:ENST00000582453.5:ENST00000675656.1:ENST00000322684.7:ENST00000579590.5:ENST00000676073.1:ENST00000675822.1:ENST00000442934.6:ENST00000579180.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	49	2	1.55662	3.3707149999999997	5.18481	0.0688347	6.21872e-4	0.184298	0.0223951
chr11	120467408	120467508	4877548	0	+	0.36	(0.35,0.378]	chr11	455940	1	SS5_PROX	SS5_PROX:INTRON	ARHGEF12	ENSG00000196914.9	ENST00000397843.7:ENST00000356641.7:ENST00000532993.5:ENST00000529970.5:ENST00000531616.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	43	2	2.54421	3.370655	4.1971	0.0367539	0.00630238	0.138959	0.0722266
chr2	38750980	38751059	1099882	0	-	0.544304	(0.515,0.57]	chr2	118016	3	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	SRSF7	ENSG00000115875.19	ENST00000446327.6:ENST00000313117.11:ENST00000425778.5:ENST00000425941.6:ENST00000409276.5:ENST00000431066.5:ENST00000443213.5:ENST00000415527.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	119	2	2.81592	3.37046	3.925	9.18093e-5	8.71525e-5	0.00852669	0.00783545
chr15	30641717	30641817	5992431	0	+	0.45	(0.44,0.476]	chr15	569738	1	SS5_PROX	SS5_PROX:INTRON	ENSG00000284906:ARHGAP11B	ENSG00000284906.3:ENSG00000285077.3	ENST00000564902.5:ENST00000428041.4:ENST00000693711.1:ENST00000685924.1:ENST00000563110.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	134	2	2.93158	3.3704549999999998	3.80933	4.10713e-4	9.15705e-6	0.0186113	0.00217645
chr3	6638233	6638333	1357626	0	+	0.29	(0.28,0.32]	chr3	142522	538	INTRON	INTRON	ENSG00000189229	ENSG00000189229.12	ENST00000433639.1:ENST00000655754.1:ENST00000658468.1:ENST00000669512.1:ENST00000667028.1:ENST00000655541.1:ENST00000668643.1:ENST00000671568.1:ENST00000671036.1:ENST00000669798.1:ENST00000655753.1:ENST00000655856.1:ENST00000658398.1:ENST00000661518.1:ENST00000661279.1:ENST00000655495.1:ENST00000663041.1:ENST00000659827.1:ENST00000667716.1:ENST00000668416.1:ENST00000658133.1:ENST00000342990.4:ENST00000660054.1:ENST00000671370.1	lncRNA	lncRNA	lncRNA	lncRNA	1	39	2	2.73077	3.3703950000000003	4.01002	0.0434868	0.0220748	0.162255	0.115395
chr22	20538410	20538510	7479661	0	+	0.5	(0.476,0.515]	chr22	762972	8	INTRON	INTRON	MED15	ENSG00000099917.17	ENST00000445987.5:ENST00000444094.5:ENST00000414658.5:ENST00000486656.5:ENST00000433831.5:ENST00000432052.5:ENST00000292733.11:ENST00000263205.11:ENST00000477824.5:ENST00000406969.5:ENST00000382974.6:ENST00000441501.5:ENST00000445189.5:ENST00000451058.5:ENST00000473028.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	126	2	2.44393	3.37037	4.29681	7.12759e-4	2.44502e-5	0.0243332	0.00406051
chr12	65221716	65221816	5157638	0	+	0.42	(0.408,0.44]	chr12	488254	27	INTRON	INTRON	LEMD3	ENSG00000174106.3	ENST00000308330.3	protein_coding	protein_coding	protein_coding	protein_coding	2	45	2	2.40661	3.370305	4.334	0.011982	0.011475	0.0962115	0.0888882
chr10	92651017	92651114	4491282	0	+	0.515464	(0.515,0.57]	chr10	413654	1	INTRON	INTRON	KIF11	ENSG00000138160.7	ENST00000676757.1:ENST00000676647.1:ENST00000260731.5:ENST00000676621.1:ENST00000677720.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	27	2	2.23915	3.3700849999999996	4.50102	0.0596178	0.00510768	0.16883600000000001	0.0646039
chr15	88911498	88911598	6256824	0	-	0.52	(0.515,0.57]	chr15	596899	4	SS3_PROX	SS3_PROX:INTRON	MFGE8	ENSG00000140545.16	ENST00000268150.13:ENST00000558018.5:ENST00000558029.6:ENST00000695566.1:ENST00000268151.11:ENST00000566497.5:ENST00000695774.1:ENST00000542878.5:ENST00000695567.1:ENST00000695568.1:ENST00000695569.1:ENST00000695570.1:ENST00000559997.5:ENST00000558352.5:ENST00000558773.1:ENST00000557944.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	27	2	2.23915	3.3700849999999996	4.50102	0.0596178	0.00510768	0.16883600000000001	0.0646039
chr16	16061864	16061964	6308893	0	+	0.53	(0.515,0.57]	chr16	603578	44	INTRON	INTRON	ABCC1	ENSG00000103222.20	ENST00000678422.1:ENST00000677164.1:ENST00000399408.7:ENST00000572882.3:ENST00000399410.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	27	2	2.23915	3.3700849999999996	4.50102	0.0596178	0.00510768	0.16883600000000001	0.0646039
chr17	21024784	21024883	6742985	0	-	0.545455	(0.515,0.57]	chr17	662061	32	INTRON	INTRON	USP22	ENSG00000124422.12	ENST00000261497.9:ENST00000537526.6:ENST00000455117.6:ENST00000579645.5:ENST00000476111.5:ENST00000584538.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	27	2	2.23915	3.3700849999999996	4.50102	0.0596178	0.00510768	0.16883600000000001	0.0646039
chr17	51073109	51073209	6796539	0	-	0.54	(0.515,0.57]	chr17	671018	163	INTRON	INTRON	SPAG9	ENSG00000008294.22	ENST00000262013.12:ENST00000505279.5:ENST00000357122.8:ENST00000514613.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	27	2	2.23915	3.3700849999999996	4.50102	0.0596178	0.00510768	0.16883600000000001	0.0646039
chr4	99884791	99884874	2208988	0	-	0.518072	(0.515,0.57]	chr4	216315	3	INTRON	INTRON	LAMTOR3	ENSG00000109270.13	ENST00000499666.7:ENST00000226522.8:ENST00000515100.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	27	2	2.23915	3.3700849999999996	4.50102	0.0596178	0.00510768	0.16883600000000001	0.0646039
chr5	140417840	140417940	2502986	0	+	0.52	(0.515,0.57]	chr5	239166	152	INTRON	INTRON	ANKHD1	ENSG00000131503.21	ENST00000297183.10:ENST00000616482.4:ENST00000360839.7:ENST00000421134.5:ENST00000394723.7:ENST00000511151.5:ENST00000394722.7	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	2.23915	3.3700849999999996	4.50102	0.0596178	0.00510768	0.16883600000000001	0.0646039
chr3	47470791	47470889	1682807	0	-	0.5	(0.476,0.515]	chr3	171881	40	INTRON	INTRON	SCAP	ENSG00000114650.21	ENST00000265565.10:ENST00000441517.6:ENST00000320017.10:ENST00000648151.1:ENST00000416208.5:ENST00000416847.5:ENST00000448217.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	64	2	3.13389	3.3700799999999997	3.60627	0.00405473	7.49088e-4	0.0578376	0.0251179
chr16	88947723	88947822	6541004	0	-	0.515152	(0.476,0.515]	chr16	634104	60	INTRON	INTRON	CBFA2T3	ENSG00000129993.15	ENST00000268679.9:ENST00000563640.1:ENST00000570046.1	protein_coding	protein_coding	protein_coding	protein_coding	2	62	2	3.24596	3.370035	3.49411	0.00322919	9.23453e-4	0.0507087	0.0278392
chr11	74903542	74903641	4988746	0	-	0.555556	(0.515,0.57]	chr11	471326	396	INTRON	INTRON	XRRA1	ENSG00000166435.16	ENST00000530562.5:ENST00000340360.10:ENST00000321448.12:ENST00000684022.1:ENST00000531849.5:ENST00000527087.5:ENST00000531449.5:ENST00000529926.1:ENST00000528819.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	27	2	2.34087	3.369935	4.399	0.0469761	0.00708863	0.151917	0.0754923
chr11	86339025	86339125	4842734	0	+	0.52	(0.515,0.57]	chr11	451825	11	INTRON	INTRON	HIKESHI	ENSG00000149196.17	ENST00000533986.5:ENST00000278483.8:ENST00000531485.5:ENST00000528004.5:ENST00000530208.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	27	2	2.34087	3.369935	4.399	0.0469761	0.00708863	0.151917	0.0754923
chr12	122612423	122612517	5241504	0	+	0.531915	(0.515,0.57]	chr12	497859	8	INTRON	INTRON	KNTC1	ENSG00000184445.12	ENST00000450485.6:ENST00000333479.12:ENST00000436959.7:ENST00000546125.1:ENST00000542727.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	27	2	2.34087	3.369935	4.399	0.0469761	0.00708863	0.151917	0.0754923
chr16	4700407	4700501	6437907	0	-	0.542553	(0.515,0.57]	chr16	619961	8	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	ANKS3	ENSG00000168096.15	ENST00000450067.6:ENST00000614075.4:ENST00000304283.9:ENST00000592077.5:ENST00000590193.5:ENST00000446014.6:ENST00000591653.5:ENST00000590803.5:ENST00000585773.5:ENST00000588513.1:ENST00000592840.1:ENST00000590730.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	27	2	2.34087	3.369935	4.399	0.0469761	0.00708863	0.151917	0.0754923
chr16	69802594	69802694	6382006	0	+	0.52	(0.515,0.57]	chr16	613319	29	INTRON	INTRON	WWP2	ENSG00000198373.13	ENST00000569620.5:ENST00000359154.7:ENST00000569174.5:ENST00000544162.5:ENST00000567986.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	27	2	2.34087	3.369935	4.399	0.0469761	0.00708863	0.151917	0.0754923
chr4	39290738	39290838	2128471	0	-	0.54	(0.515,0.57]	chr4	209740	3	INTRON	INTRON	RFC1	ENSG00000035928.17	ENST00000381897.5:ENST00000349703.7:ENST00000510783.5:ENST00000502991.5:ENST00000504974.1:ENST00000514572.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	27	2	2.34087	3.369935	4.399	0.0469761	0.00708863	0.151917	0.0754923
chr8	99077324	99077424	3811900	0	+	0.52	(0.515,0.57]	chr8	353071	209	INTRON	INTRON	VPS13B	ENSG00000132549.20	ENST00000496144.5:ENST00000683334.1:ENST00000682853.1:ENST00000357162.7:ENST00000358544.7:ENST00000683619.1:ENST00000441350.2:ENST00000684269.1:ENST00000682806.1:ENST00000683869.1:ENST00000682153.1:ENST00000682358.1:ENST00000682145.1:ENST00000355155.6:ENST00000682234.1:ENST00000683486.1:ENST00000684308.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	27	2	2.34087	3.369935	4.399	0.0469761	0.00708863	0.151917	0.0754923
chrX	18276101	18276201	7770264	0	-	0.56	(0.515,0.57]	chrX	794172	99	INTRON	INTRON	SCML2	ENSG00000102098.19	ENST00000251900.9:ENST00000665583.1	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	2.34087	3.369935	4.399	0.0469761	0.00708863	0.151917	0.0754923
chr1	28917271	28917371	58983	0	+	0.45	(0.44,0.476]	chr1	7621	21	INTRON	INTRON	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000647918.1:ENST00000646800.1:ENST00000644342.1:ENST00000646189.1:ENST00000482464.6:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000646260.1:ENST00000373798.5:ENST00000644600.1:ENST00000649674.1:ENST00000643173.1:ENST00000343067.9:ENST00000644780.1:ENST00000650265.1:ENST00000648181.1:ENST00000643604.1:ENST00000648891.1:ENST00000373797.2:ENST00000349460.9:ENST00000645184.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	30	2	2.20949	3.3699149999999998	4.53034	0.0672585	0.00672609	0.183051	0.0738715
chr1	37926936	37927036	425976	0	-	0.45	(0.44,0.476]	chr1	51620	351	INTRON	INTRON	INPP5B	ENSG00000204084.13	ENST00000373023.6:ENST00000373024.8:ENST00000458109.6:ENST00000373027.5:ENST00000373026.5	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	2.20949	3.3699149999999998	4.53034	0.0672585	0.00672609	0.183051	0.0738715
chr1	150490500	150490600	222868	0	+	0.46	(0.44,0.476]	chr1	25130	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	TARS2	ENSG00000143374.18	ENST00000369054.6:ENST00000369064.8:ENST00000606933.5:ENST00000369051.7:ENST00000467982.6:ENST00000466989.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	30	2	2.20949	3.3699149999999998	4.53034	0.0672585	0.00672609	0.183051	0.0738715
chr10	70205300	70205396	4640924	0	-	0.46875	(0.44,0.476]	chr10	426928	5	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	PPA1	ENSG00000180817.12	ENST00000373232.8:ENST00000610026.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	30	2	2.20949	3.3699149999999998	4.53034	0.0672585	0.00672609	0.183051	0.0738715
chr2	25874574	25874674	1085503	0	-	0.45	(0.44,0.476]	chr2	115962	287	INTRON	INTRON	ASXL2	ENSG00000143970.18	ENST00000435504.9:ENST00000336112.9:ENST00000682588.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	30	2	2.20949	3.3699149999999998	4.53034	0.0672585	0.00672609	0.183051	0.0738715
chr2	97235070	97235170	832115	0	+	0.33	(0.32,0.35]	chr2	93233	8	INTRON	INTRON	ANKRD36	ENSG00000135976.21	ENST00000420699.9:ENST00000652721.1:ENST00000461153.7:ENST00000421946.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	72	2	3.16237	3.36984	3.57731	0.00550276	7.67492e-4	0.0648867	0.0254532
chr14	96820244	96820344	5811083	0	+	0.41	(0.408,0.44]	chr14	551001	201	INTRON	INTRON	VRK1	ENSG00000100749.9	ENST00000553683.2:ENST00000680538.1:ENST00000555351.2:ENST00000681195.1:ENST00000681524.1:ENST00000680084.1:ENST00000679533.1:ENST00000681598.1:ENST00000679727.1:ENST00000679758.1:ENST00000680509.1:ENST00000557222.6:ENST00000679977.1:ENST00000680387.1:ENST00000680335.1:ENST00000680683.1:ENST00000681474.1:ENST00000216639.8:ENST00000681363.1:ENST00000681538.1:ENST00000679736.1:ENST00000681176.1:ENST00000680922.1:ENST00000679903.1:ENST00000557352.2:ENST00000681101.1:ENST00000681419.1:ENST00000680348.1:ENST00000679941.1:ENST00000679452.1:ENST00000680849.1:ENST00000679770.1:ENST00000681493.1:ENST00000681778.1:ENST00000680993.1:ENST00000681355.1:ENST00000681695.1:ENST00000681344.1:ENST00000680007.1:ENST00000679918.1:ENST00000681785.1:ENST00000679816.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	31	2	2.51492	3.369695	4.22447	0.0329839	0.0161655	0.133816	0.109464
chr2	169615024	169615124	906789	0	+	0.44	(0.408,0.44]	chr2	100060	3	SS5_PROX	SS5_PROX:INTRON	PPIG	ENSG00000138398.17	ENST00000678088.1:ENST00000677392.1:ENST00000433207.6:ENST00000679324.1:ENST00000414307.6:ENST00000676508.1:ENST00000260970.8:ENST00000678695.1:ENST00000409714.7:ENST00000530152.5:ENST00000677750.1:ENST00000678721.1:ENST00000462903.6:ENST00000676756.1:ENST00000679107.1:ENST00000678499.1:ENST00000678638.1:ENST00000448752.7:ENST00000417938.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	31	2	2.51492	3.369695	4.22447	0.0329839	0.0161655	0.133816	0.109464
chr2	171951580	171951680	918652	0	+	0.42	(0.408,0.44]	chr2	101189	44	INTRON	INTRON	HAT1	ENSG00000128708.13	ENST00000412731.5:ENST00000264108.5:ENST00000457761.6:ENST00000494601.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	31	2	2.51492	3.369695	4.22447	0.0329839	0.0161655	0.133816	0.109464
chr21	36327770	36327869	7403763	0	+	0.414141	(0.408,0.44]	chr21	754279	71	INTRON	INTRON	MORC3	ENSG00000159256.13	ENST00000492336.5:ENST00000400485.6:ENST00000487909.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	31	2	2.51492	3.369695	4.22447	0.0329839	0.0161655	0.133816	0.109464
chr3	45731170	45731200	1417472	0	+	0.433333	(0.408,0.44]	chr3	148718	1	SS3_PROX	SS3_PROX:INTRON	SACM1L	ENSG00000211456.13	ENST00000455997.5:ENST00000418611.5:ENST00000672477.1:ENST00000441228.5:ENST00000389061.10:ENST00000672858.2:ENST00000433336.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	31	2	2.51492	3.369695	4.22447	0.0329839	0.0161655	0.133816	0.109464
chr5	154791745	154791845	2527365	0	+	0.41	(0.408,0.44]	chr5	241626	4	SS3_PROX	SS3_PROX:INTRON	LARP1	ENSG00000155506.19	ENST00000687700.1:ENST00000336314.9:ENST00000690816.1:ENST00000518297.6:ENST00000517616.5:ENST00000521577.1:ENST00000519931.5:ENST00000524248.5:ENST00000685946.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	31	2	2.51492	3.369695	4.22447	0.0329839	0.0161655	0.133816	0.109464
chr9	68282231	68282331	4133868	0	+	0.43	(0.408,0.44]	chr9	376827	69	INTRON	INTRON	CBWD3	ENSG00000196873.16	ENST00000618921.4:ENST00000618217.4:ENST00000377342.9:ENST00000621474.4:ENST00000621396.4:ENST00000615061.4:ENST00000360171.11:ENST00000612050.4:ENST00000622755.4:ENST00000377344.6:ENST00000614398.4:ENST00000622817.4:ENST00000619322.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	31	2	2.51492	3.369695	4.22447	0.0329839	0.0161655	0.133816	0.109464
chr1	11942925	11943024	26067	0	+	0.424242	(0.408,0.44]	chr1	2949	77	INTRON	INTRON	PLOD1	ENSG00000083444.17	ENST00000485046.5:ENST00000449038.5:ENST00000196061.5:ENST00000358133.5:ENST00000429000.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	41	2	1.88062	3.36967	4.85872	0.0534548	0.00221911	0.162935	0.0435144
chr11	28131252	28131351	4752387	0	+	0.424242	(0.408,0.44]	chr11	440090	55	INTRON	INTRON	METTL15	ENSG00000169519.21	ENST00000406787.7:ENST00000451385.6:ENST00000407364.8:ENST00000532947.2:ENST00000634627.1:ENST00000634973.1:ENST00000303459.10:ENST00000634721.1:ENST00000634762.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	41	2	1.88062	3.36967	4.85872	0.0534548	0.00221911	0.162935	0.0435144
chr11	86029991	86030089	5014450	0	-	0.285714	(0.28,0.32]	chr11	473014	33	INTRON	INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000630913.2:ENST00000528398.5:ENST00000356360.9:ENST00000534412.5:ENST00000531558.1:ENST00000531930.5:ENST00000532041.5:ENST00000525162.5:ENST00000528256.1:ENST00000528411.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	78	2	3.12332	3.36966	3.616	0.00698537	7.42427e-4	0.0718189	0.024913
chr3	156543469	156543569	1844391	0	-	0.31	(0.28,0.32]	chr3	185574	2	SS3_PROX	SS3_PROX:INTRON	SSR3	ENSG00000114850.7	ENST00000265044.7:ENST00000467789.5:ENST00000476217.5:ENST00000498205.5:ENST00000478842.5:ENST00000464138.1:ENST00000463503.5:ENST00000496050.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	78	2	3.2685	3.36956	3.47062	0.00432734	0.00137212	0.0579331	0.0340241
chr1	20751877	20751977	389504	0	-	0.38	(0.378,0.408]	chr1	46531	16	INTRON	INTRON	HP1BP3	ENSG00000127483.19	ENST00000438032.6:ENST00000312239.10:ENST00000375003.6:ENST00000419948.5	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	2.63247	3.3695399999999998	4.10661	0.0399023	0.0215745	0.143072	0.123836
chr10	68945751	68945851	4443473	0	+	0.38	(0.378,0.408]	chr10	409813	21	INTRON	INTRON	DDX50	ENSG00000107625.14	ENST00000373585.8:ENST00000466265.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	29	2	2.63247	3.3695399999999998	4.10661	0.0399023	0.0215745	0.143072	0.123836
chr17	59957302	59957382	6803166	0	-	0.3875	(0.378,0.408]	chr17	671992	2	CDS	CDS:UTR3:EXON_MRNA	RNFT1	ENSG00000189050.16	ENST00000305783.13:ENST00000482446.5:ENST00000466544.5:ENST00000486103.6:ENST00000484257.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	29	2	2.63247	3.3695399999999998	4.10661	0.0399023	0.0215745	0.143072	0.123836
chr2	30469209	30469309	727039	0	+	0.39	(0.378,0.408]	chr2	83971	91	INTRON	INTRON	LCLAT1	ENSG00000172954.14	ENST00000466477.5:ENST00000465200.5:ENST00000319406.8:ENST00000379509.8:ENST00000491680.6:ENST00000488144.5:ENST00000465538.5:ENST00000309052.8:ENST00000478015.5:ENST00000476038.5:ENST00000497423.1:ENST00000476535.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	29	2	2.63247	3.3695399999999998	4.10661	0.0399023	0.0215745	0.143072	0.123836
chr3	177071578	177071677	1871172	0	-	0.40404	(0.378,0.408]	chr3	187367	62	INTRON	INTRON	TBL1XR1	ENSG00000177565.18	ENST00000457928.7:ENST00000430069.5:ENST00000673974.1:ENST00000631253.2:ENST00000352800.10:ENST00000422442.6:ENST00000428970.5:ENST00000424913.5:ENST00000437738.5:ENST00000431421.5:ENST00000635794.1:ENST00000630796.2:ENST00000450267.5:ENST00000630833.2:ENST00000431674.5:ENST00000422066.5:ENST00000443315.5:ENST00000627825.2:ENST00000427349.5:ENST00000413084.5:ENST00000637137.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	29	2	2.63247	3.3695399999999998	4.10661	0.0399023	0.0215745	0.143072	0.123836
chr3	197162437	197162537	1902142	0	-	0.38	(0.378,0.408]	chr3	190636	3	INTRON	INTRON	DLG1	ENSG00000075711.21	ENST00000667157.1:ENST00000346964.6:ENST00000656428.1:ENST00000663148.1:ENST00000655488.1:ENST00000357674.9:ENST00000671185.1:ENST00000658701.1:ENST00000667104.1:ENST00000661336.1:ENST00000669565.1:ENST00000670455.1:ENST00000656087.1:ENST00000670366.1:ENST00000653583.1:ENST00000653795.1:ENST00000671246.1:ENST00000661453.1:ENST00000665728.1:ENST00000664564.1:ENST00000653331.1:ENST00000660432.1:ENST00000660898.1:ENST00000657381.1:ENST00000659221.1:ENST00000654737.1:ENST00000669332.1:ENST00000659716.1:ENST00000660553.1:ENST00000664991.1:ENST00000419354.5:ENST00000661440.1:ENST00000667971.1:ENST00000670935.1:ENST00000668578.1:ENST00000666007.1:ENST00000661229.1:ENST00000660237.1:ENST00000657098.1:ENST00000661013.1:ENST00000436682.6:ENST00000452595.5:ENST00000662727.1:ENST00000422288.6:ENST00000448528.6:ENST00000443183.5:ENST00000656944.1:ENST00000392382.6:ENST00000450955.5:ENST00000658155.1:ENST00000669714.1:ENST00000654733.1:ENST00000469073.2:ENST00000419227.5:ENST00000392381.7:ENST00000471733.5:ENST00000419553.6:ENST00000447466.1:ENST00000661808.1:ENST00000453607.5:ENST00000456699.6:ENST00000392380.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	29	2	2.63247	3.3695399999999998	4.10661	0.0399023	0.0215745	0.143072	0.123836
chr4	126557411	126557511	2236283	0	-	0.39	(0.378,0.408]	chr4	219023	919	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	1	29	2	2.63247	3.3695399999999998	4.10661	0.0399023	0.0215745	0.143072	0.123836
chr5	132886109	132886209	2724465	0	-	0.38	(0.378,0.408]	chr5	256243	4	SS5_PROX	SS5_PROX:INTRON	AFF4	ENSG00000072364.13	ENST00000265343.10	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	2.63247	3.3695399999999998	4.10661	0.0399023	0.0215745	0.143072	0.123836
chr20	56378540	56378640	7358743	0	-	0.4	(0.378,0.408]	chr20	750346	46	INTRON	INTRON	AURKA	ENSG00000087586.18	ENST00000395914.5:ENST00000395913.7:ENST00000312783.10:ENST00000395911.5:ENST00000395915.8:ENST00000347343.6:ENST00000371356.6:ENST00000395907.5:ENST00000441357.5	protein_coding	protein_coding	protein_coding	protein_coding	2	39	2	2.23831	3.369435	4.50056	0.0179575	0.015974	0.114265	0.101453
chr3	138781293	138781393	1830964	0	-	0.4	(0.378,0.408]	chr3	184056	108	INTRON	INTRON	PIK3CB	ENSG00000051382.9	ENST00000674063.1:ENST00000477593.5:ENST00000462898.5:ENST00000483968.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	39	2	2.23831	3.369435	4.50056	0.0179575	0.015974	0.114265	0.101453
chr6	17863402	17863502	3067306	0	-	0.4	(0.378,0.408]	chr6	285088	69	INTRON	INTRON	KIF13A	ENSG00000137177.20	ENST00000378814.9:ENST00000259711.11:ENST00000378826.6:ENST00000378843.6:ENST00000636847.1:ENST00000507576.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	39	2	2.23831	3.369435	4.50056	0.0179575	0.015974	0.114265	0.101453
chr5	146228248	146228346	2514363	0	+	0.387755	(0.378,0.408]	chr5	240164	44	INTRON	INTRON	ENSG00000275740:RBM27	ENSG00000275740.1:ENSG00000091009.8	ENST00000506502.2:ENST00000265271.7	protein_coding	protein_coding	protein_coding	protein_coding	3	87	2	2.76893	3.36935	3.96977	0.00316735	9.19167e-5	0.0503085	0.00801007
chrX	154801563	154801660	7915574	0	-	0.525773	(0.515,0.57]	chrX	806179	13	INTRON	INTRON	MPP1	ENSG00000130830.15	ENST00000369534.8:ENST00000413259.7:ENST00000439370.5:ENST00000393531.5:ENST00000453245.5:ENST00000494170.1:ENST00000393529.5:ENST00000475943.5:ENST00000428488.1:ENST00000417435.5:ENST00000369531.1:ENST00000471821.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	175	2	2.7626	3.3693	3.976	1.26197e-4	1.95064e-7	0.0101515	2.06886e-4
chr22	26540388	26540488	7564564	0	-	0.51	(0.476,0.515]	chr22	774015	2	SS5_PROX	SS5_PROX:INTRON	TPST2	ENSG00000128294.16	ENST00000338754.9:ENST00000403880.5:ENST00000398110.6:ENST00000445720.1	protein_coding	protein_coding	protein_coding	protein_coding	2	62	2	3.29074	3.36929	3.44784	0.00272563	0.00113238	0.0467523	0.0308465
chr7	152278641	152278740	3679708	0	-	0.323232	(0.32,0.35]	chr7	341617	44	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000684262.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	144	2	1.77253	3.369045	4.96556	0.0271031	3.04975e-7	0.123904	2.75296e-4
chr11	85974207	85974307	5013862	0	-	0.33	(0.32,0.35]	chr11	472907	1	SS5_PROX	SS5_PROX:INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000530692.5:ENST00000526548.3:ENST00000630913.2:ENST00000529760.5:ENST00000528398.5:ENST00000532603.5:ENST00000356360.9:ENST00000529016.5:ENST00000526961.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	161	2	2.29709	3.36903	4.44097	0.00110289	2.23618e-5	0.0303851	0.00386054
chr11	3888455	3888555	4723792	0	+	0.34	(0.32,0.35]	chr11	437133	3	SS5_PROX	SS5_PROX:INTRON	STIM1	ENSG00000167323.12	ENST00000525403.5:ENST00000526596.2:ENST00000300737.8:ENST00000616714.4:ENST00000527651.5:ENST00000532610.5:ENST00000532919.5:ENST00000530554.5:ENST00000524822.5	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	2.56618	3.368995	4.17181	0.04531	0.0274185	0.149888	0.136498
chr11	102356122	102356222	4855248	0	+	0.34	(0.32,0.35]	chr11	452789	48	INTRON	INTRON	BIRC2	ENSG00000110330.10	ENST00000227758.7:ENST00000530675.5:ENST00000533742.5:ENST00000532672.5:ENST00000531259.5:ENST00000527910.5:ENST00000613397.4:ENST00000528344.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	31	2	2.56618	3.368995	4.17181	0.04531	0.0274185	0.149888	0.136498
chr14	30570036	30570136	5674494	0	+	0.34	(0.32,0.35]	chr14	540499	88	INTRON	INTRON	G2E3	ENSG00000092140.16	ENST00000206595.11:ENST00000438909.6:ENST00000544007.5:ENST00000550944.5:ENST00000552488.1:ENST00000648008.1:ENST00000553504.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	31	2	2.56618	3.368995	4.17181	0.04531	0.0274185	0.149888	0.136498
chr14	73441841	73441941	5919140	0	-	0.33	(0.32,0.35]	chr14	562258	314	INTRON	INTRON	NUMB	ENSG00000133961.21	ENST00000554546.5:ENST00000555238.6:ENST00000557597.5:ENST00000356296.8:ENST00000555394.5:ENST00000554394.5:ENST00000555307.5:ENST00000554315.5:ENST00000555987.5:ENST00000556112.5:ENST00000557774.5:ENST00000554818.5:ENST00000557031.5:ENST00000556600.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	31	2	2.56618	3.368995	4.17181	0.04531	0.0274185	0.149888	0.136498
chr14	103471198	103471298	5826517	0	+	0.33	(0.32,0.35]	chr14	552901	20	INTRON	INTRON	MARK3	ENSG00000075413.19	ENST00000678179.1:ENST00000676838.1:ENST00000677348.1:ENST00000677404.1:ENST00000676694.1:ENST00000676938.1:ENST00000678619.1:ENST00000676897.1:ENST00000677214.1:ENST00000677942.1:ENST00000676830.1:ENST00000678999.1:ENST00000677228.1:ENST00000556744.2:ENST00000677104.1:ENST00000679330.1:ENST00000560417.6:ENST00000440884.7:ENST00000676475.1:ENST00000677035.1:ENST00000678022.1:ENST00000677560.1:ENST00000561314.6:ENST00000429436.7:ENST00000677118.1:ENST00000676564.1:ENST00000678169.1:ENST00000678175.1:ENST00000678897.1:ENST00000678278.1:ENST00000676645.1:ENST00000677829.1:ENST00000678302.1:ENST00000677133.1:ENST00000678207.1:ENST00000677360.1:ENST00000676905.1:ENST00000678343.1:ENST00000677347.1:ENST00000678071.1:ENST00000677432.1:ENST00000678237.1:ENST00000677604.1:ENST00000676518.1:ENST00000677051.1:ENST00000677857.1:ENST00000677869.1:ENST00000416682.6:ENST00000303622.13:ENST00000216288.11:ENST00000679105.1:ENST00000553942.5:ENST00000335102.9:ENST00000678091.1:ENST00000561071.5:ENST00000676745.1:ENST00000554627.5:ENST00000559274.1:ENST00000677410.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	31	2	2.56618	3.368995	4.17181	0.04531	0.0274185	0.149888	0.136498
chr20	49056660	49056759	7283889	0	+	0.333333	(0.32,0.35]	chr20	740813	99	INTRON	INTRON	CSE1L	ENSG00000124207.17	ENST00000396192.7:ENST00000262982.3	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	2.56618	3.368995	4.17181	0.04531	0.0274185	0.149888	0.136498
chr4	159235116	159235216	2074824	0	+	0.34	(0.32,0.35]	chr4	205198	52	INTRON	INTRON	RAPGEF2	ENSG00000109756.10	ENST00000644474.1:ENST00000691494.1:ENST00000505478.5:ENST00000504604.5:ENST00000503328.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	31	2	2.56618	3.368995	4.17181	0.04531	0.0274185	0.149888	0.136498
chr7	75465907	75466007	3558726	0	-	0.34	(0.32,0.35]	chr7	331545	233	INTRON	INTRON	POM121C	ENSG00000272391.6	ENST00000615331.5:ENST00000398379.2	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	2.56618	3.368995	4.17181	0.04531	0.0274185	0.149888	0.136498
chr8	92877311	92877410	3990879	0	-	0.333333	(0.32,0.35]	chr8	365359	22	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	FLJ46284	ENSG00000248858.7	ENST00000504861.2:ENST00000623616.1	lncRNA	TEC	lncRNA	TEC:lncRNA	1	31	2	2.56618	3.368995	4.17181	0.04531	0.0274185	0.149888	0.136498
chr19	49825048	49825148	7091338	0	+	0.36	(0.35,0.378]	chr19	710433	52	INTRON	INTRON	MED25	ENSG00000104973.19	ENST00000593767.3:ENST00000312865.10:ENST00000538643.5:ENST00000595185.5	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	2.6498	3.36898	4.08816	0.046021	0.0210137	0.149888	0.122348
chr3	57589726	57589825	1706213	0	-	0.353535	(0.35,0.378]	chr3	175950	49	INTRON	INTRON	ARF4	ENSG00000168374.11	ENST00000303436.11:ENST00000496292.5:ENST00000489843.1:ENST00000486310.5:ENST00000483848.5:ENST00000463880.1:ENST00000493378.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	30	2	2.6498	3.36898	4.08816	0.046021	0.0210137	0.149888	0.122348
chr6	42213719	42213819	3095408	0	-	0.37	(0.35,0.378]	chr6	289558	2	SS5_PROX	SS5_PROX:INTRON	MRPS10	ENSG00000048544.6	ENST00000053468.4	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	2.6498	3.36898	4.08816	0.046021	0.0210137	0.149888	0.122348
chrX	73852323	73852423	7838047	0	-	0.45	(0.44,0.476]	chrX	799611	150	EXON_LNCRNA	EXON_LNCRNA	XIST	ENSG00000229807.13	ENST00000429829.6	lncRNA	lncRNA	lncRNA	lncRNA	27	599	2	2.96431	3.368685	3.77306	2.67012e-7	7.62162e-8	2.54107e-4	1.17848e-4
chr10	80508059	80508151	4476775	0	+	0.358696	(0.35,0.378]	chr10	412094	3	INTRON	INTRON	TSPAN14	ENSG00000108219.15	ENST00000429989.7:ENST00000481124.5:ENST00000372158.6:ENST00000372157.6:ENST00000469149.1:ENST00000372164.7:ENST00000341863.10:ENST00000372156.5:ENST00000616406.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	34	2	2.66547	3.368665	4.07186	0.0279478	0.0233639	0.137011	0.118323
chr2	26225416	26225516	1085909	0	-	0.36	(0.35,0.378]	chr2	116048	99	INTRON	INTRON	HADHA	ENSG00000084754.12	ENST00000380649.8:ENST00000644428.1:ENST00000492433.2:ENST00000643057.1:ENST00000645274.1:ENST00000643233.1:ENST00000643063.1:ENST00000646483.1:ENST00000471743.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	34	2	2.66547	3.368665	4.07186	0.0279478	0.0233639	0.137011	0.118323
chr8	90346742	90346842	3793561	0	+	0.52	(0.515,0.57]	chr8	351786	996	INTRON	INTRON	LINC00534	ENSG00000253394.7	ENST00000662145.1:ENST00000655523.1:ENST00000517400.6:ENST00000658299.1:ENST00000663329.1:ENST00000658342.1:ENST00000523283.6:ENST00000655219.1:ENST00000662692.1:ENST00000667296.1:ENST00000667565.1:ENST00000523406.2:ENST00000659030.1:ENST00000653734.1:ENST00000654785.1:ENST00000524361.5:ENST00000668745.1:ENST00000666641.2:ENST00000661519.1:ENST00000671657.1:ENST00000655123.1:ENST00000663098.1:ENST00000670903.1:ENST00000654946.1	lncRNA	lncRNA	lncRNA	lncRNA	4	50	2	1.48539	3.36861	5.25183	0.0553982	2.6074e-4	0.165463	0.014326
chr1	47270166	47270266	445656	0	-	0.39	(0.378,0.408]	chr1	54000	3	SS3_PROX	SS3_PROX:INTRON	STIL	ENSG00000123473.17	ENST00000360380.7:ENST00000371877.8:ENST00000337817.10:ENST00000682940.1:ENST00000683977.1:ENST00000682977.1:ENST00000396221.6:ENST00000684618.1:ENST00000447475.7:ENST00000418131.1:ENST00000436811.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	87	2	2.83344	3.368575	3.90371	0.00244811	1.30398e-4	0.0445777	0.00983066
chr5	70200870	70200969	2637914	0	-	0.424242	(0.408,0.44]	chr5	250588	31	INTRON	INTRON	ENSG00000254701	ENSG00000254701.3	ENST00000508650.2	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	3	46	2	1.9831	3.3685400000000003	4.75398	0.018491	0.00703931	0.116694	0.0718189
chr6	119280896	119280996	3205125	0	-	0.52	(0.515,0.57]	chr6	298310	113	INTRON	INTRON	MAN1A1	ENSG00000111885.7	ENST00000368468.4	protein_coding	protein_coding	protein_coding	protein_coding	5	98	2	2.66721	3.3684849999999997	4.06976	3.70168e-4	5.5596e-5	0.0173218	0.00651834
chr6	147672086	147672185	2990716	0	+	0.222222	[0,0.28]	chr6	280159	109	INTRON	INTRON	ENSG00000227681	ENSG00000227681.5	ENST00000427015.1:ENST00000432506.5	lncRNA	lncRNA	lncRNA	lncRNA	3	119	2	3.13676	3.368475	3.60019	0.00172089	7.59748e-4	0.0374701	0.0252954
chr21	36376345	36376441	7404276	0	+	0.260417	[0,0.28]	chr21	754378	12	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	MORC3	ENSG00000159256.13	ENST00000400485.6:ENST00000487909.5:ENST00000546482.5:ENST00000549948.5:ENST00000551788.5:ENST00000551367.5:ENST00000552581.5:ENST00000547657.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	119	2	3.11282	3.368465	3.62411	0.00157815	8.44203e-4	0.0362091	0.0263813
chr21	10331425	10331524	7427334	0	-	0.474747	(0.44,0.476]	chr21	757671	20	INTRON	INTRON	ENSG00000277693	ENSG00000277693.2	ENST00000622592.1:ENST00000616952.1	lncRNA	lncRNA	lncRNA	lncRNA	4	101	2	2.67169	3.368395	4.0651	0.00140924	5.16491e-5	0.0340865	0.00585477
chr17	36528302	36528402	6759585	0	-	0.48	(0.476,0.515]	chr17	664579	1	SS3_PROX	SS3_PROX:INTRON	MYO19	ENSG00000278259.5	ENST00000614623.5:ENST00000610992.4:ENST00000621550.4:ENST00000610930.4:ENST00000621344.4:ENST00000620640.4:ENST00000616159.4:ENST00000622055.4:ENST00000616207.4:ENST00000613551.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	32	2	2.7646	3.3683050000000003	3.97201	0.030904	0.0162075	0.143385	0.101453
chr2	177261006	177261106	1275810	0	-	0.49	(0.476,0.515]	chr2	134708	264	INTRON	INTRON	NFE2L2	ENSG00000116044.16	ENST00000397063.8:ENST00000464747.5:ENST00000397062.8:ENST00000446151.6:ENST00000449627.1:ENST00000448782.5:ENST00000430047.1:ENST00000586532.5:ENST00000421929.5:ENST00000423513.5:ENST00000588123.1:ENST00000477534.1:ENST00000462023.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	32	2	2.7646	3.3683050000000003	3.97201	0.030904	0.0162075	0.143385	0.101453
chr8	41691384	41691480	3937970	0	-	0.5	(0.476,0.515]	chr8	360958	4	INTRON	INTRON	ANK1	ENSG00000029534.21	ENST00000347528.8:ENST00000265709.13:ENST00000289734.13:ENST00000520299.5:ENST00000645531.1:ENST00000524227.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	32	2	2.7646	3.3683050000000003	3.97201	0.030904	0.0162075	0.143385	0.101453
chr13	79403003	79403103	5626377	0	-	0.34	(0.32,0.35]	chr13	536667	237	INTRON	INTRON	RBM26	ENSG00000139746.16	ENST00000438737.3:ENST00000438724.5:ENST00000622611.4:ENST00000267229.11:ENST00000472143.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	42	2	2.19668	3.3682800000000004	4.53988	0.021398	0.0202178	0.123719	0.109913
chr14	73102232	73102328	5784530	0	+	0.385417	(0.378,0.408]	chr14	547874	12	EXON_MRNA	EXON_MRNA:INTRON	RBM25	ENSG00000119707.14	ENST00000527432.5:ENST00000261973.12:ENST00000532683.5:ENST00000528081.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	104	2	2.69945	3.368215	4.03698	9.70462e-4	1.18327e-4	0.0286926	0.00985867
chr2	167920736	167920836	1259010	0	-	0.25	[0,0.28]	chr2	133340	196	INTRON	INTRON	B3GALT1-AS1	ENSG00000235335.3	ENST00000430546.2:ENST00000657553.1:ENST00000670221.1:ENST00000436982.2	lncRNA	lncRNA	lncRNA	lncRNA	4	146	2	3.1358	3.367995	3.60019	0.00172089	1.97979e-4	0.0374701	0.0122787
chr11	47813615	47813715	4951808	0	-	0.44	(0.408,0.44]	chr11	464575	2	SS3_PROX	SS3_PROX:INTRON	NUP160	ENSG00000030066.14	ENST00000694866.1:ENST00000378460.7:ENST00000530326.5:ENST00000528071.5:ENST00000528501.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	63	2	3.05705	3.367955	3.67886	0.00658331	3.86173e-4	0.0701901	0.017761
chr13	52332954	52333054	5598920	0	-	0.59	(0.57,1]	chr13	535283	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	TPTE2P2	ENSG00000272281.6	ENST00000605936.6:ENST00000606711.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	2	26	2	2.42282	3.367795	4.31277	0.00879576	0.00346264	0.0790073	0.0539802
chr12	57821515	57821614	5339892	0	-	0.575758	(0.57,1]	chr12	510981	17	UTR3	UTR3:EXON_MRNA	CTDSP2	ENSG00000175215.11	ENST00000398073.7	protein_coding	protein_coding	protein_coding	protein_coding	1	19	2	2.36411	3.367735	4.37136	0.0408868	0.00345135	0.161534	0.0517761
chr15	101744804	101744901	6271246	0	-	0.587629	(0.57,1]	chr15	598241	1	SS3_PROX	SS3_PROX:INTRON	ENSG00000259658	ENSG00000259658.5	ENST00000636288.2:ENST00000635726.1:ENST00000558592.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	1	19	2	2.36411	3.367735	4.37136	0.0408868	0.00345135	0.161534	0.0517761
chr17	57407539	57407638	6634268	0	+	0.575758	(0.57,1]	chr17	648045	1	INTRON	INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000674961.1:ENST00000582453.5:ENST00000675656.1:ENST00000322684.7:ENST00000579590.5:ENST00000442934.6:ENST00000579180.2:ENST00000579205.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	19	2	2.36411	3.367735	4.37136	0.0408868	0.00345135	0.161534	0.0517761
chr2	161202263	161202362	900750	0	+	0.575758	(0.57,1]	chr2	99623	49	INTRON	INTRON	TANK	ENSG00000136560.14	ENST00000259075.6:ENST00000432002.5:ENST00000440506.5:ENST00000429217.5:ENST00000406287.5:ENST00000402568.5:ENST00000457887.5:ENST00000392749.7:ENST00000432692.6:ENST00000441987.5:ENST00000405852.5:ENST00000456358.5:ENST00000468831.5:ENST00000403609.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	19	2	2.36411	3.367735	4.37136	0.0408868	0.00345135	0.161534	0.0517761
chr4	740199	740298	1908140	0	+	0.686869	(0.57,1]	chr4	191240	23	INTRON	INTRON	PCGF3	ENSG00000185619.18	ENST00000362003.9:ENST00000470161.6:ENST00000430644.5:ENST00000440452.5:ENST00000433814.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	19	2	2.36411	3.367735	4.37136	0.0408868	0.00345135	0.161534	0.0517761
chrX	52958127	52958225	7817759	0	-	0.581633	(0.57,1]	chrX	797362	20	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	FAM156A	ENSG00000268350.8	ENST00000613284.1:ENST00000611661.4:ENST00000622732.5:ENST00000622323.5:ENST00000612083.5:ENST00000610625.5:ENST00000618601.5:ENST00000619373.5:ENST00000622447.5:ENST00000619518.5:ENST00000617970.4:ENST00000622197.5:ENST00000612915.4:ENST00000615092.4:ENST00000623782.3:ENST00000596733.7:ENST00000616592.1:ENST00000619897.4:ENST00000616235.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	19	2	2.36411	3.367735	4.37136	0.0408868	0.00345135	0.161534	0.0517761
chr5	39056418	39056518	2605468	0	-	0.51	(0.476,0.515]	chr5	247896	349	INTRON	INTRON	RICTOR	ENSG00000164327.13	ENST00000357387.8:ENST00000511516.5:ENST00000296782.9:ENST00000510711.5:ENST00000513566.1:ENST00000514735.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	141	2	2.70285	3.3677099999999998	4.03257	9.96835e-5	8.9508e-5	0.00903184	0.0079464
chr11	590785	590883	4719718	0	+	0.510204	(0.476,0.515]	chr11	436176	30	INTRON	INTRON	PHRF1	ENSG00000070047.13	ENST00000264555.10:ENST00000416188.3:ENST00000534320.5:ENST00000413872.6:ENST00000533464.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	30	2	2.40608	3.3676150000000002	4.32915	0.0425709	0.0124637	0.148082	0.0973643
chr12	11661148	11661248	5076715	0	+	0.5	(0.476,0.515]	chr12	480040	106	INTRON	INTRON	ETV6	ENSG00000139083.11	ENST00000396373.9:ENST00000541426.1:ENST00000544715.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	30	2	2.40608	3.3676150000000002	4.32915	0.0425709	0.0124637	0.148082	0.0973643
chr12	57067135	57067235	5336730	0	-	0.51	(0.476,0.515]	chr12	510361	20	INTRON	INTRON	NEMP1	ENSG00000166881.10	ENST00000300128.9:ENST00000379391.7:ENST00000554340.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	30	2	2.40608	3.3676150000000002	4.32915	0.0425709	0.0124637	0.148082	0.0973643
chr14	59225154	59225254	5733647	0	+	0.49	(0.476,0.515]	chr14	544534	360	INTRON	INTRON	DAAM1	ENSG00000100592.16	ENST00000556596.1:ENST00000360909.8:ENST00000556135.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	30	2	2.40608	3.3676150000000002	4.32915	0.0425709	0.0124637	0.148082	0.0973643
chr19	16584205	16584304	7150032	0	-	0.50505	(0.476,0.515]	chr19	722409	54	INTRON	INTRON	MED26	ENSG00000105085.11	ENST00000263390.8:ENST00000611692.4:ENST00000598492.5:ENST00000598608.1:ENST00000601478.1:ENST00000600060.1	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	2.40608	3.3676150000000002	4.32915	0.0425709	0.0124637	0.148082	0.0973643
chr19	40762500	40762600	7070205	0	+	0.51	(0.476,0.515]	chr19	706506	2	SS3_PROX	SS3_PROX:INTRON	SNRPA	ENSG00000077312.9	ENST00000601545.5:ENST00000597353.5:ENST00000243563.8:ENST00000601393.1:ENST00000598923.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	30	2	2.40608	3.3676150000000002	4.32915	0.0425709	0.0124637	0.148082	0.0973643
chr22	41096781	41096881	7521535	0	+	0.48	(0.476,0.515]	chr22	768515	33	INTRON	INTRON	EP300	ENSG00000100393.14	ENST00000263253.9:ENST00000674155.1	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	2.40608	3.3676150000000002	4.32915	0.0425709	0.0124637	0.148082	0.0973643
chr4	2368074	2368174	2099225	0	-	0.51	(0.476,0.515]	chr4	207734	33	INTRON	INTRON	ZFYVE28	ENSG00000159733.14	ENST00000290974.7:ENST00000511071.5:ENST00000509171.5:ENST00000503000.1:ENST00000508184.5	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	2.40608	3.3676150000000002	4.32915	0.0425709	0.0124637	0.148082	0.0973643
chr8	65833773	65833873	3960933	0	-	0.48	(0.476,0.515]	chr8	363383	444	INTRON	INTRON	PDE7A	ENSG00000205268.11	ENST00000401827.8:ENST00000396642.7:ENST00000519231.5:ENST00000523253.1:ENST00000519626.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	30	2	2.40608	3.3676150000000002	4.32915	0.0425709	0.0124637	0.148082	0.0973643
chr1	230909420	230909520	654485	0	-	0.47	(0.44,0.476]	chr1	77585	4	SS3_PROX	SS3_PROX:INTRON	TTC13	ENSG00000143643.13	ENST00000366661.9:ENST00000366662.8	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	2.39604	3.367515	4.33899	0.0404291	0.0206616	0.161534	0.110999
chr12	121420069	121420155	5237158	0	+	0.44186	(0.44,0.476]	chr12	497155	3	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	RNF34	ENSG00000170633.17	ENST00000613529.4:ENST00000361234.10:ENST00000392465.7:ENST00000392464.3:ENST00000555076.1:ENST00000554484.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	28	2	2.39604	3.367515	4.33899	0.0404291	0.0206616	0.161534	0.110999
chr15	55273201	55273300	6180740	0	-	0.444444	(0.44,0.476]	chr15	589167	24	INTRON	INTRON	RAB27A	ENSG00000069974.16	ENST00000336787.6:ENST00000563262.5:ENST00000567639.1:ENST00000565776.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	28	2	2.39604	3.367515	4.33899	0.0404291	0.0206616	0.161534	0.110999
chr17	40281377	40281476	6610096	0	+	0.474747	(0.44,0.476]	chr17	643778	33	UTR3	UTR3:EXON_MRNA	WIPF2	ENSG00000171475.14	ENST00000323571.9	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	2.39604	3.367515	4.33899	0.0404291	0.0206616	0.161534	0.110999
chr21	34852198	34852298	7446903	0	-	0.47	(0.44,0.476]	chr21	759836	172	INTRON	INTRON	RUNX1	ENSG00000159216.19	ENST00000300305.7:ENST00000675419.1:ENST00000437180.5:ENST00000344691.8:ENST00000482318.5:ENST00000399240.5:ENST00000358356.9:ENST00000469087.1:ENST00000399237.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	28	2	2.39604	3.367515	4.33899	0.0404291	0.0206616	0.161534	0.110999
chr22	38687311	38687409	7588812	0	-	0.469388	(0.44,0.476]	chr22	776887	19	UTR3	UTR3:EXON_MRNA	JOSD1	ENSG00000100221.11	ENST00000683374.1:ENST00000216039.9	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	2.39604	3.367515	4.33899	0.0404291	0.0206616	0.161534	0.110999
chr6	7888504	7888604	3053810	0	-	0.46	(0.44,0.476]	chr6	284016	4	SS5_PROX	SS5_PROX:INTRON	TXNDC5	ENSG00000239264.9	ENST00000379757.9:ENST00000460138.5:ENST00000473453.2:ENST00000475802.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	28	2	2.39604	3.367515	4.33899	0.0404291	0.0206616	0.161534	0.110999
chr8	96241343	96241441	3994983	0	-	0.459184	(0.44,0.476]	chr8	365847	11	INTRON	INTRON	MTERF3	ENSG00000156469.9	ENST00000523821.5:ENST00000287025.4:ENST00000522822.5:ENST00000524341.5	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	2.39604	3.367515	4.33899	0.0404291	0.0206616	0.161534	0.110999
chr7	119678761	119678861	3628124	0	-	0.48	(0.476,0.515]	chr7	337315	1783	INTRON	INTRON	LINC02476	ENSG00000225546.6	ENST00000660268.1	lncRNA	lncRNA	lncRNA	lncRNA	8	209	2	2.79512	3.36741	3.9397	9.69341e-5	1.0551e-6	0.00827261	6.32938e-4
chr6	157828864	157828963	3015818	0	+	0.414141	(0.408,0.44]	chr6	281347	51	INTRON	INTRON	SNX9	ENSG00000130340.17	ENST00000614703.4:ENST00000614800.4:ENST00000680863.1:ENST00000679814.1:ENST00000680464.1:ENST00000681186.1:ENST00000679732.1:ENST00000681183.1:ENST00000681534.1:ENST00000681651.1:ENST00000680089.1:ENST00000680078.1:ENST00000680974.1:ENST00000680095.1:ENST00000680015.1:ENST00000681138.1:ENST00000392185.8:ENST00000679790.1:ENST00000680495.1:ENST00000679691.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	42	2	2.11447	3.36728	4.62009	0.0285207	0.00504155	0.12666	0.0646039
chr15	38330953	38331053	5999137	0	+	0.35	(0.32,0.35]	chr15	570228	47	INTRON	INTRON	SPRED1	ENSG00000166068.13	ENST00000299084.9:ENST00000561317.1	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	2.57263	3.367245	4.16186	0.0312297	0.026079	0.133676	0.13151
chr17	36967868	36967968	6602700	0	+	0.33	(0.32,0.35]	chr17	642673	136	INTRON	INTRON	AATF	ENSG00000275700.6	ENST00000680340.1:ENST00000680356.1:ENST00000616434.2:ENST00000680579.1:ENST00000681800.1:ENST00000680330.1:ENST00000680807.1:ENST00000679985.1:ENST00000679508.1:ENST00000619387.5:ENST00000679997.1:ENST00000613840.1:ENST00000681062.1:ENST00000679881.1:ENST00000680782.1:ENST00000679600.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	35	2	2.57263	3.367245	4.16186	0.0312297	0.026079	0.133676	0.13151
chr17	30492953	30493053	6589220	0	+	0.38	(0.378,0.408]	chr17	640809	2	SS5_PROX	SS5_PROX:INTRON	GOSR1	ENSG00000108587.16	ENST00000225724.9:ENST00000451249.7:ENST00000427274.6:ENST00000467337.6:ENST00000581721.5:ENST00000414833.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	87	2	2.70141	3.367175	4.03294	0.00411614	6.52685e-5	0.0564981	0.00669119
chr5	131588888	131588988	2718707	0	-	0.48	(0.476,0.515]	chr5	255608	265	INTRON	INTRON	RAPGEF6	ENSG00000158987.22	ENST00000509018.6:ENST00000507093.5:ENST00000296859.10:ENST00000627212.2:ENST00000308008.10:ENST00000515170.5:ENST00000510071.5:ENST00000503398.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	62	2	3.33416	3.367095	3.40003	0.00230489	0.00139193	0.0428247	0.0341261
chr5	176974796	176974895	2776616	0	-	0.40404	(0.378,0.408]	chr5	261567	36	INTRON	INTRON	UIMC1	ENSG00000087206.17	ENST00000377227.8:ENST00000511320.6:ENST00000506128.5:ENST00000512031.5:ENST00000509236.5:ENST00000417486.6:ENST00000515488.1:ENST00000507513.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	87	2	2.86464	3.367075	3.86951	0.00215581	1.55755e-4	0.0417866	0.0106835
chr15	28147633	28147732	6122241	0	-	0.262626	[0,0.28]	chr15	583058	9	INTRON	INTRON	HERC2	ENSG00000128731.18	ENST00000261609.13:ENST00000650509.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	41	2	2.54624	3.36707	4.1879	0.0396579	0.0388449	0.161534	0.143072
chr1	180057076	180057175	268488	0	+	0.424242	(0.408,0.44]	chr1	31446	22	INTRON	INTRON	CEP350	ENSG00000135837.16	ENST00000367607.8	protein_coding	protein_coding	protein_coding	protein_coding	4	52	2	1.43792	3.36702	5.29612	0.062843	0.00113523	0.196433	0.0307488
chr4	128971991	128972086	2240060	0	-	0.336842	(0.32,0.35]	chr4	219262	17	EXON_MRNA	EXON_MRNA:INTRON	SCLT1	ENSG00000151466.12	ENST00000651532.1:ENST00000281142.10:ENST00000506233.5:ENST00000503215.5:ENST00000439369.6:ENST00000502495.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	49	2	2.2664	3.36699	4.46758	0.0199969	0.0119306	0.109608	0.0962115
chr17	57312825	57312925	6633317	0	+	0.51	(0.476,0.515]	chr17	648024	21	INTRON	INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000581776.5:ENST00000674961.1:ENST00000582453.5:ENST00000675656.1:ENST00000322684.7:ENST00000579590.5:ENST00000676073.1:ENST00000675822.1:ENST00000442934.6:ENST00000579180.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	52	2	1.63962	3.3669249999999997	5.09423	0.0346854	0.00204588	0.148144	0.04086
chr17	40152576	40152676	6609249	0	+	0.47	(0.44,0.476]	chr17	643675	106	INTRON	INTRON	CASC3	ENSG00000108349.17	ENST00000418132.7:ENST00000264645.12:ENST00000581849.1:ENST00000584997.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	30	2	2.29842	3.366835	4.43525	0.0552483	0.00897296	0.165463	0.0849778
chr2	28911598	28911696	725349	0	+	0.44898	(0.44,0.476]	chr2	83797	47	INTRON	INTRON	WDR43	ENSG00000163811.12	ENST00000407426.8:ENST00000440983.1:ENST00000296126.6	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	2.29842	3.366835	4.43525	0.0552483	0.00897296	0.165463	0.0849778
chr3	20107027	20107126	1377098	0	+	0.464646	(0.44,0.476]	chr3	145114	52	INTRON	INTRON	KAT2B	ENSG00000114166.8	ENST00000263754.5	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	2.29842	3.366835	4.43525	0.0552483	0.00897296	0.165463	0.0849778
chr5	126944395	126944495	2713696	0	-	0.46	(0.44,0.476]	chr5	255272	258	INTRON	INTRON	MARCHF3	ENSG00000173926.6	ENST00000308660.6:ENST00000502289.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	30	2	2.29842	3.366835	4.43525	0.0552483	0.00897296	0.165463	0.0849778
chr2	111484143	111484242	1211702	0	-	0.484848	(0.476,0.515]	chr2	128939	37	INTRON	INTRON	MIR4435-2HG	ENSG00000172965.17	ENST00000645030.2:ENST00000642191.1:ENST00000673798.1:ENST00000645051.2:ENST00000673649.1:ENST00000669658.1:ENST00000669917.1:ENST00000661559.1:ENST00000653687.1:ENST00000667670.1:ENST00000609220.2:ENST00000656760.1:ENST00000609902.6:ENST00000666683.1:ENST00000674070.1:ENST00000662335.1:ENST00000664422.1:ENST00000673775.1:ENST00000674092.1:ENST00000673958.1:ENST00000658936.1:ENST00000662635.1:ENST00000666204.1:ENST00000659458.1:ENST00000664443.1:ENST00000670295.1:ENST00000661655.1:ENST00000666390.1:ENST00000659079.1:ENST00000660442.1:ENST00000664009.1:ENST00000439362.6:ENST00000654473.1:ENST00000664999.1:ENST00000673728.1:ENST00000659791.1:ENST00000666144.1:ENST00000659933.1:ENST00000670715.1:ENST00000653568.1:ENST00000643013.1:ENST00000673866.1:ENST00000443467.6:ENST00000669875.1:ENST00000673653.1:ENST00000673988.1:ENST00000661945.1:ENST00000669515.1:ENST00000431385.6:ENST00000656416.1:ENST00000674037.1:ENST00000432818.5:ENST00000674013.1:ENST00000444301.5:ENST00000673964.1:ENST00000673845.1:ENST00000673756.1:ENST00000673960.1:ENST00000673804.1:ENST00000673632.1:ENST00000453478.2:ENST00000673937.1:ENST00000673654.1:ENST00000409569.2:ENST00000674087.1:ENST00000419736.5:ENST00000673840.1:ENST00000674045.1:ENST00000643766.1:ENST00000308604.5:ENST00000604981.5:ENST00000673894.1:ENST00000441075.1:ENST00000673878.1	lncRNA	lncRNA	lncRNA	lncRNA	14	362	2	3.35384	3.3668199999999997	3.3798	1.039e-6	6.91712e-7	5.85105e-4	4.97073e-4
chr17	67895953	67896052	6668417	0	+	0.525253	(0.515,0.57]	chr17	650588	14	INTRON	INTRON	BPTF	ENSG00000171634.19	ENST00000306378.11:ENST00000544778.6:ENST00000321892.8:ENST00000342579.8:ENST00000644067.1:ENST00000424123.7	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	2.83501	3.366785	3.89856	0.0280943	0.0117686	0.137011	0.0894475
chr19	32704209	32704309	7049799	0	+	0.4	(0.378,0.408]	chr19	702960	112	INTRON	INTRON	NUDT19	ENSG00000213965.4	ENST00000397061.4	protein_coding	protein_coding	protein_coding	protein_coding	2	42	2	1.88729	3.36678	4.84627	0.0532327	0.00254319	0.162538	0.0465056
chr3	172158263	172158363	1560737	0	+	0.38	(0.378,0.408]	chr3	161551	93	INTRON	INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000421757.5:ENST00000469491.5:ENST00000336824.8:ENST00000423424.5:ENST00000416957.5:ENST00000478016.1:ENST00000443501.1:ENST00000476794.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	42	2	1.88729	3.36678	4.84627	0.0532327	0.00254319	0.162538	0.0465056
chr17	31946819	31946918	6595775	0	+	0.252525	[0,0.28]	chr17	641548	60	INTRON	INTRON	SUZ12	ENSG00000178691.11	ENST00000322652.10:ENST00000580398.1	protein_coding	protein_coding	protein_coding	protein_coding	3	57	2	1.62313	3.36673	5.11033	0.0605286	0.00991388	0.191883	0.0838372
chr3	72424106	72424206	1745696	0	-	0.28	[0,0.28]	chr3	177368	436	INTRON	INTRON	RYBP	ENSG00000163602.12	ENST00000477973.5	protein_coding	protein_coding	protein_coding	protein_coding	3	57	2	1.62313	3.36673	5.11033	0.0605286	0.00991388	0.191883	0.0838372
chr3	10038590	10038684	1362307	0	+	0.542553	(0.515,0.57]	chr3	143454	11	INTRON	INTRON	FANCD2	ENSG00000144554.13	ENST00000682647.1:ENST00000287647.7:ENST00000676013.1:ENST00000675286.1:ENST00000419585.5:ENST00000431693.1:ENST00000438741.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	54	2	3.2024	3.366625	3.53085	0.00322022	6.59951e-4	0.0507087	0.0232396
chr10	855947	856047	4541820	0	-	0.39	(0.378,0.408]	chr10	419263	105	INTRON	INTRON	LARP4B	ENSG00000107929.16	ENST00000688365.1:ENST00000316157.8:ENST00000690516.1:ENST00000689323.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	31	2	2.30961	3.36655	4.42349	0.055088	0.00992961	0.165463	0.0877296
chr11	70272636	70272736	4820429	0	+	0.39	(0.378,0.408]	chr11	449380	2	SS5_PROX	SS5_PROX:INTRON	PPFIA1	ENSG00000131626.19	ENST00000253925.12:ENST00000389547.7:ENST00000532504.5:ENST00000530746.1:ENST00000532024.1:ENST00000648755.1:ENST00000644155.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	31	2	2.30961	3.36655	4.42349	0.055088	0.00992961	0.165463	0.0877296
chr14	101891836	101891931	5819823	0	+	0.378947	(0.378,0.408]	chr14	551905	12	INTRON	INTRON	PPP2R5C	ENSG00000078304.20	ENST00000694906.1:ENST00000422945.6:ENST00000328724.9:ENST00000350249.7:ENST00000557621.5:ENST00000334743.9:ENST00000445439.7:ENST00000557095.5:ENST00000554137.5:ENST00000556218.5:ENST00000557534.1:ENST00000557716.2:ENST00000556805.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	31	2	2.30961	3.36655	4.42349	0.055088	0.00992961	0.165463	0.0877296
chr17	64129034	64129131	6813403	0	-	0.381443	(0.378,0.408]	chr17	673513	31	UTR3	UTR3:EXON_MRNA:INTRON	ERN1	ENSG00000178607.17	ENST00000680433.1:ENST00000433197.4:ENST00000584041.1:ENST00000680493.1:ENST00000606895.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	31	2	2.30961	3.36655	4.42349	0.055088	0.00992961	0.165463	0.0877296
chr2	58190304	58190402	1126230	0	-	0.387755	(0.378,0.408]	chr2	120909	2	EXON_LNCRNA	EXON_LNCRNA:INTRON	FANCL	ENSG00000115392.13	ENST00000696400.1:ENST00000403295.8:ENST00000696492.1:ENST00000427708.7:ENST00000696314.1:ENST00000696315.1:ENST00000696454.1:ENST00000696508.1:ENST00000696548.1:ENST00000696542.1:ENST00000696432.1:ENST00000696319.1:ENST00000403676.6:ENST00000696433.1:ENST00000696434.1:ENST00000696499.1:ENST00000696564.1:ENST00000402135.8:ENST00000696546.1:ENST00000233741.9:ENST00000696316.1:ENST00000696378.1:ENST00000696435.1:ENST00000696493.1:ENST00000696543.1:ENST00000696544.1:ENST00000696545.1:ENST00000696565.1:ENST00000696620.1:ENST00000696621.1:ENST00000696635.1:ENST00000696364.1:ENST00000696634.1:ENST00000696317.1:ENST00000696622.1:ENST00000696467.1:ENST00000696547.1:ENST00000449070.6:ENST00000696305.1:ENST00000417361.2:ENST00000696338.1:ENST00000696361.1:ENST00000696318.1:ENST00000696371.1:ENST00000696409.1:ENST00000696410.1:ENST00000696455.1:ENST00000696468.1:ENST00000696527.1:ENST00000696567.1:ENST00000696324.1:ENST00000696566.1:ENST00000696623.1:ENST00000446381.6:ENST00000696469.1:ENST00000696624.1:ENST00000696411.1:ENST00000696475.1:ENST00000470506.2:ENST00000696358.1:ENST00000696373.1:ENST00000696394.1:ENST00000696320.1:ENST00000696339.1:ENST00000696395.1:ENST00000696341.1:ENST00000696340.1:ENST00000696374.1:ENST00000696396.1:ENST00000696342.1:ENST00000696325.1:ENST00000696399.1:ENST00000696398.1:ENST00000696306.1:ENST00000696397.1:ENST00000696360.1:ENST00000696344.1:ENST00000696343.1:ENST00000696637.1:ENST00000696362.1:ENST00000696528.1:ENST00000696497.1:ENST00000696326.1:ENST00000696638.1:ENST00000696625.1:ENST00000696510.1:ENST00000696438.1:ENST00000696496.1:ENST00000696509.1:ENST00000696569.1:ENST00000696457.1:ENST00000696458.1:ENST00000696473.1:ENST00000696495.1:ENST00000696415.1:ENST00000696472.1:ENST00000696494.1:ENST00000696363.1:ENST00000696414.1:ENST00000696459.1:ENST00000696498.1:ENST00000696532.1:ENST00000696416.1:ENST00000696530.1:ENST00000696460.1:ENST00000696570.1:ENST00000696531.1:ENST00000696307.1:ENST00000696401.1:ENST00000696345.1:ENST00000696377.1:ENST00000696417.1:ENST00000696594.1:ENST00000696595.1:ENST00000696379.1:ENST00000696346.1:ENST00000696380.1:ENST00000696347.1:ENST00000696461.1:ENST00000696596.1:ENST00000696549.1:ENST00000696597.1:ENST00000696550.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	31	2	2.30961	3.36655	4.42349	0.055088	0.00992961	0.165463	0.0877296
chr22	31557159	31557259	7504609	0	+	0.39	(0.378,0.408]	chr22	765704	1	SS5_PROX	SS5_PROX:INTRON	SFI1	ENSG00000198089.16	ENST00000540643.5:ENST00000432498.5:ENST00000443011.5:ENST00000400288.7:ENST00000400289.5:ENST00000382162.7:ENST00000524296.5:ENST00000450787.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	31	2	2.30961	3.36655	4.42349	0.055088	0.00992961	0.165463	0.0877296
chr10	125081598	125081698	4713545	0	-	0.28	[0,0.28]	chr10	434897	421	INTRON	INTRON	CTBP2	ENSG00000175029.17	ENST00000337195.9:ENST00000411419.6:ENST00000494626.6:ENST00000531469.5:ENST00000460976.5:ENST00000476817.1:ENST00000530884.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	164	2	2.64611	3.3665350000000003	4.08696	8.7193e-4	2.58504e-4	0.0268378	0.0148796
chr1	235253009	235253109	663107	0	-	0.23	[0,0.28]	chr1	78533	2	SS3_PROX	SS3_PROX:INTRON	ARID4B	ENSG00000054267.22	ENST00000349213.7:ENST00000366603.6:ENST00000264183.9:ENST00000421364.5:ENST00000491632.5:ENST00000418304.1:ENST00000466653.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	35	2	2.43761	3.366485	4.29536	0.0590175	0.0423864	0.167915	0.161744
chr10	68923164	68923263	4443240	0	+	0.222222	[0,0.28]	chr10	409779	28	INTRON	INTRON	DDX50	ENSG00000107625.14	ENST00000373585.8:ENST00000460470.1:ENST00000466265.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	35	2	2.43761	3.366485	4.29536	0.0590175	0.0423864	0.167915	0.161744
chr17	82567853	82567953	6693090	0	+	0.26	[0,0.28]	chr17	654641	4	SS3_PROX	SS3_PROX:INTRON	FOXK2	ENSG00000141568.21	ENST00000473637.6:ENST00000335255.10:ENST00000527313.6:ENST00000570585.1:ENST00000531030.5:ENST00000526383.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	35	2	2.43761	3.366485	4.29536	0.0590175	0.0423864	0.167915	0.161744
chr19	32463065	32463165	7049351	0	+	0.23	[0,0.28]	chr19	702870	3	SS3_PROX	SS3_PROX:INTRON	DPY19L3	ENSG00000178904.19	ENST00000392250.7:ENST00000586987.5:ENST00000342179.9:ENST00000585597.5:ENST00000588648.7:ENST00000592142.5:ENST00000592832.2:ENST00000590651.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	35	2	2.43761	3.366485	4.29536	0.0590175	0.0423864	0.167915	0.161744
chr5	73070370	73070469	2389331	0	+	0.232323	[0,0.28]	chr5	230621	12	INTRON	INTRON	FCHO2	ENSG00000157107.14	ENST00000430046.7:ENST00000512348.5:ENST00000508431.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	35	2	2.43761	3.366485	4.29536	0.0590175	0.0423864	0.167915	0.161744
chr9	130877618	130877717	4215506	0	+	0.474747	(0.44,0.476]	chr9	386466	22	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000318560.6	protein_coding	protein_coding	protein_coding	protein_coding	11	256	2	2.63905	3.36642	4.09379	9.35096e-5	1.34788e-7	0.00859551	1.66304e-4
chr12	123195786	123195884	5443678	0	-	0.479592	(0.476,0.515]	chr12	520812	8	INTRON	INTRON	MPHOSPH9	ENSG00000051825.15	ENST00000606320.6:ENST00000541076.6:ENST00000545556.6:ENST00000302373.8:ENST00000539024.5:ENST00000606326.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	31	2	2.63168	3.3664050000000003	4.10113	0.0237106	0.0226984	0.124921	0.118716
chr17	27155002	27155102	6580375	0	+	0.49	(0.476,0.515]	chr17	639586	582	INTRON	INTRON	ENSG00000285822	ENSG00000285822.1	ENST00000649401.1	lncRNA	lncRNA	lncRNA	lncRNA	1	31	2	2.63168	3.3664050000000003	4.10113	0.0237106	0.0226984	0.124921	0.118716
chr5	71106589	71106687	2639392	0	-	0.489796	(0.476,0.515]	chr5	250829	13	INTRON	INTRON	NAIPP4	ENSG00000251634.2	ENST00000512908.2	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	1	31	2	2.63168	3.3664050000000003	4.10113	0.0237106	0.0226984	0.124921	0.118716
chr2	151457260	151457360	893701	0	+	0.47	(0.44,0.476]	chr2	98995	1	SS3_PROX	SS3_PROX:INTRON	RIF1	ENSG00000080345.18	ENST00000453091.6:ENST00000428287.6:ENST00000444746.7:ENST00000243326.9:ENST00000430328.6	protein_coding	protein_coding	protein_coding	protein_coding	5	63	2	1.38203	3.366175	5.35032	0.058781	3.02713e-4	0.167915	0.0155054
chr14	37072688	37072788	5877014	0	-	0.36	(0.35,0.378]	chr14	558013	1973	INTRON	INTRON	SLC25A21	ENSG00000183032.12	ENST00000331299.6:ENST00000555449.5:ENST00000557611.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	92	2	2.99602	3.3660550000000002	3.73609	0.00133795	3.31057e-4	0.0335491	0.0161599
chr19	10392490	10392585	7135934	0	-	0.284211	(0.28,0.32]	chr19	719538	4	INTRON	INTRON	CDC37	ENSG00000105401.9	ENST00000222005.7:ENST00000591248.5:ENST00000589625.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	36	2	2.39347	3.3660500000000004	4.33863	0.0504457	0.0207276	0.156383	0.122348
chr7	158745806	158745905	3688963	0	-	0.30303	(0.28,0.32]	chr7	342335	17	INTRON	INTRON	ESYT2	ENSG00000117868.18	ENST00000251527.10:ENST00000275418.13:ENST00000652148.1	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	2.39347	3.3660500000000004	4.33863	0.0504457	0.0207276	0.156383	0.122348
chr9	131148084	131148180	4215854	0	+	0.541667	(0.515,0.57]	chr9	386572	1	INTRON	INTRON	NUP214	ENSG00000126883.19	ENST00000695497.1:ENST00000695498.1:ENST00000695496.1:ENST00000695495.1:ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000651022.1:ENST00000525980.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	43	2	2.22166	3.36583	4.51	0.00809449	0.00735516	0.0766625	0.0765982
chr8	129570321	129570421	4060990	0	-	0.29	(0.28,0.32]	chr8	369672	132	INTRON	INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1:ENST00000676273.1:ENST00000667643.1:ENST00000668791.1:ENST00000663716.1:ENST00000663572.1:ENST00000676148.1:ENST00000667962.1:ENST00000674877.1:ENST00000675316.1:ENST00000674656.1:ENST00000446592.7:ENST00000667341.1:ENST00000675186.1:ENST00000652971.1:ENST00000661447.1:ENST00000674863.1:ENST00000675498.1:ENST00000675527.1:ENST00000676108.1:ENST00000657647.1:ENST00000675589.1:ENST00000675913.1:ENST00000675109.1:ENST00000671632.1:ENST00000671311.1:ENST00000676099.1:ENST00000660652.1:ENST00000675522.1:ENST00000675044.1:ENST00000675435.1:ENST00000674639.1:ENST00000676069.1:ENST00000675532.1:ENST00000674762.1:ENST00000523151.6:ENST00000675948.1:ENST00000665364.1:ENST00000657251.1:ENST00000675166.1:ENST00000674883.1:ENST00000675867.1:ENST00000674580.1:ENST00000675393.1:ENST00000520048.1:ENST00000674906.1:ENST00000676030.1:ENST00000670588.1:ENST00000675072.1:ENST00000664936.1:ENST00000652914.1:ENST00000657069.1:ENST00000674882.1	lncRNA	lncRNA	lncRNA	lncRNA	3	106	2	2.92142	3.36562	3.80982	0.00234443	3.09593e-4	0.0434875	0.0157609
chr11	68495561	68495661	4817681	0	+	0.37	(0.35,0.378]	chr11	448907	344	INTRON	INTRON	PPP6R3	ENSG00000110075.15	ENST00000530427.5:ENST00000528635.5:ENST00000529907.5:ENST00000533127.5:ENST00000534534.5:ENST00000529344.5:ENST00000524845.5:ENST00000393800.7:ENST00000265637.8:ENST00000524904.5:ENST00000393801.7:ENST00000265636.9:ENST00000529710.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	69	2	2.89003	3.365615	3.8412	0.0122391	1.97447e-4	0.0910127	0.0122531
chr1	168006491	168006591	249197	0	+	0.33	(0.32,0.35]	chr1	29602	13	INTRON	INTRON	DCAF6	ENSG00000143164.16	ENST00000432587.6:ENST00000367843.7:ENST00000470721.5:ENST00000367840.4:ENST00000312263.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	72	2	3.07935	3.36561	3.65187	0.00724137	5.49434e-4	0.0729826	0.0213049
chr20	38058799	38058893	7269131	0	+	0.404255	(0.378,0.408]	chr20	738697	8	INTRON	INTRON	RPRD1B	ENSG00000101413.12	ENST00000462548.6:ENST00000373433.9:ENST00000495457.1:ENST00000449186.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	44	2	2.21238	3.3654599999999997	4.51854	0.0218124	0.00748824	0.11491	0.0772645
chr12	101403604	101403699	5398052	0	-	0.484211	(0.476,0.515]	chr12	514844	3	EXON_LNCRNA	EXON_LNCRNA:SS3_PROX:INTRON	ARL1	ENSG00000120805.14	ENST00000261636.13:ENST00000539055.5:ENST00000536227.5:ENST00000551688.1:ENST00000551828.5:ENST00000551671.5:ENST00000551092.5:ENST00000549283.1:ENST00000549302.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	28	2	2.38442	3.36545	4.34648	0.0417472	0.0193566	0.161736	0.108861
chr12	132126772	132126871	5250627	0	+	0.484848	(0.476,0.515]	chr12	499357	5	EXON_LNCRNA	EXON_LNCRNA:SS3_PROX:INTRON	EP400P1	ENSG00000185684.16	ENST00000641289.3:ENST00000475841.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	1	28	2	2.38442	3.36545	4.34648	0.0417472	0.0193566	0.161736	0.108861
chr16	88592098	88592197	6418481	0	+	0.494949	(0.476,0.515]	chr16	615804	41	INTRON	INTRON	ZC3H18	ENSG00000158545.16	ENST00000301011.10:ENST00000452588.6:ENST00000569435.5:ENST00000567085.1	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	2.38442	3.36545	4.34648	0.0417472	0.0193566	0.161736	0.108861
chr16	89485142	89485242	6543548	0	-	0.5	(0.476,0.515]	chr16	634281	535	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	28	2	2.38442	3.36545	4.34648	0.0417472	0.0193566	0.161736	0.108861
chr17	4940468	4940556	6550205	0	+	0.477273	(0.476,0.515]	chr17	635703	2	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RNF167	ENSG00000108523.16	ENST00000571816.5:ENST00000571365.1:ENST00000573404.5:ENST00000576452.5:ENST00000572430.5:ENST00000262482.11:ENST00000570328.5:ENST00000575111.5:ENST00000576229.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	28	2	2.38442	3.36545	4.34648	0.0417472	0.0193566	0.161736	0.108861
chr18	32117046	32117146	6887516	0	+	0.48	(0.476,0.515]	chr18	682674	28	INTRON	INTRON	RNF138	ENSG00000134758.14	ENST00000261593.8:ENST00000257190.9:ENST00000580499.1	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	2.38442	3.36545	4.34648	0.0417472	0.0193566	0.161736	0.108861
chr19	17068530	17068630	7151006	0	-	0.5	(0.476,0.515]	chr19	722531	1	SS5_PROX	SS5_PROX:INTRON	HAUS8	ENSG00000131351.15	ENST00000253669.10:ENST00000448593.6:ENST00000593360.1:ENST00000598517.5:ENST00000601564.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	28	2	2.38442	3.36545	4.34648	0.0417472	0.0193566	0.161736	0.108861
chr2	53689984	53690084	1117725	0	-	0.51	(0.476,0.515]	chr2	119753	189	INTRON	INTRON	ASB3	ENSG00000115239.24	ENST00000406053.5:ENST00000263634.8:ENST00000406625.6:ENST00000482829.5:ENST00000394717.3:ENST00000406687.5:ENST00000470707.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	28	2	2.38442	3.36545	4.34648	0.0417472	0.0193566	0.161736	0.108861
chr20	2939482	2939582	7223224	0	+	0.49	(0.476,0.515]	chr20	733951	158	INTRON	INTRON	PTPRA	ENSG00000132670.21	ENST00000455631.5:ENST00000399903.7:ENST00000216877.10:ENST00000431048.5:ENST00000318266.9:ENST00000430705.5:ENST00000356147.3	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	2.38442	3.36545	4.34648	0.0417472	0.0193566	0.161736	0.108861
chr4	129109006	129109106	2045103	0	+	0.49	(0.476,0.515]	chr4	203095	3	SS3_PROX	SS3_PROX:INTRON	C4orf33	ENSG00000151470.13	ENST00000281146.9:ENST00000502887.5:ENST00000508673.5:ENST00000425929.6	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	2.38442	3.36545	4.34648	0.0417472	0.0193566	0.161736	0.108861
chr5	32279332	32279431	2598062	0	-	0.494949	(0.476,0.515]	chr5	246849	22	INTRON	INTRON	MTMR12	ENSG00000150712.11	ENST00000280285.9:ENST00000382142.8:ENST00000264934.5:ENST00000505419.5:ENST00000513622.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	28	2	2.38442	3.36545	4.34648	0.0417472	0.0193566	0.161736	0.108861
chr6	3066113	3066212	2788083	0	+	0.50505	(0.476,0.515]	chr6	263285	10	INTRON	INTRON	RIPK1	ENSG00000137275.16	ENST00000678809.1:ENST00000678874.1:ENST00000380409.3:ENST00000677799.1:ENST00000677261.1:ENST00000676758.1:ENST00000676995.1:ENST00000679118.1:ENST00000479389.1:ENST00000676591.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	28	2	2.38442	3.36545	4.34648	0.0417472	0.0193566	0.161736	0.108861
chr7	73545925	73546024	3555206	0	-	0.494949	(0.476,0.515]	chr7	330846	19	INTRON	INTRON	BCL7B	ENSG00000106635.8	ENST00000223368.7:ENST00000411832.5:ENST00000482231.5:ENST00000454871.5:ENST00000463858.5:ENST00000448175.5:ENST00000455335.2:ENST00000464288.5:ENST00000416906.2:ENST00000493592.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	28	2	2.38442	3.36545	4.34648	0.0417472	0.0193566	0.161736	0.108861
chr12	110307618	110307717	5226366	0	+	0.383838	(0.378,0.408]	chr12	495250	105	INTRON	INTRON	ATP2A2	ENSG00000174437.18	ENST00000308664.10:ENST00000539276.7:ENST00000377685.9:ENST00000548169.2:ENST00000550248.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	41	2	2.51464	3.365135	4.21563	0.0315429	0.00684341	0.13151	0.0748032
chr2	74168104	74168204	1157022	0	-	0.39	(0.378,0.408]	chr2	123714	6	INTRON	INTRON	MOB1A	ENSG00000114978.18	ENST00000396049.5:ENST00000497054.5:ENST00000495286.5:ENST00000463975.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	41	2	2.51464	3.365135	4.21563	0.0315429	0.00684341	0.13151	0.0748032
chr5	140511261	140511358	2503958	0	+	0.402062	(0.378,0.408]	chr5	239293	7	INTRON	INTRON	ANKHD1	ENSG00000131503.21	ENST00000297183.10:ENST00000360839.7:ENST00000421134.5:ENST00000246149.10:ENST00000412116.5:ENST00000431508.5	protein_coding	protein_coding	protein_coding	protein_coding	2	41	2	2.51464	3.365135	4.21563	0.0315429	0.00684341	0.13151	0.0748032
chr2	32216826	32216926	730304	0	+	0.37	(0.35,0.378]	chr2	84226	69	INTRON	INTRON	SLC30A6	ENSG00000152683.14	ENST00000357055.7:ENST00000435660.5:ENST00000282587.9:ENST00000449777.5:ENST00000454324.5:ENST00000379343.6:ENST00000406369.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	69	2	3.21677	3.365125	3.51348	0.00313804	0.00136294	0.0514466	0.0336321
chr12	91546759	91546858	5384684	0	-	0.434343	(0.408,0.44]	chr12	513485	395	INTRON	INTRON	ENSG00000289605	ENSG00000289605.1	ENST00000685093.1	lncRNA	lncRNA	lncRNA	lncRNA	2	64	2	2.89795	3.3650599999999997	3.83217	0.0110735	1.79883e-4	0.0873897	0.0116696
chr3	167692863	167692962	1853620	0	-	0.474747	(0.44,0.476]	chr3	186284	48	INTRON	INTRON	PDCD10	ENSG00000114209.15	ENST00000392750.7:ENST00000473645.6:ENST00000497056.6:ENST00000492396.5:ENST00000461494.5:ENST00000470131.5:ENST00000475915.6:ENST00000487947.6:ENST00000471885.5:ENST00000479121.5:ENST00000462725.6:ENST00000492139.5	protein_coding	protein_coding	protein_coding	protein_coding	4	111	2	3.19785	3.3650599999999997	3.53227	4.51048e-4	5.02287e-5	0.0196417	0.00581045
chr1	37906646	37906746	425773	0	-	0.41	(0.408,0.44]	chr1	51620	148	INTRON	INTRON	INPP5B	ENSG00000204084.13	ENST00000373023.6:ENST00000373024.8:ENST00000458109.6:ENST00000373027.5:ENST00000373026.5	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	2.3975	3.36494	4.33238	0.040266	0.0218901	0.161534	0.11491
chr1	113803924	113804024	525863	0	-	0.44	(0.408,0.44]	chr1	61864	55	INTRON	INTRON	RSBN1	ENSG00000081019.14	ENST00000261441.9:ENST00000612242.4:ENST00000476412.5:ENST00000615321.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	28	2	2.3975	3.36494	4.33238	0.040266	0.0218901	0.161534	0.11491
chr11	3890245	3890344	4723810	0	+	0.424242	(0.408,0.44]	chr11	437134	17	INTRON	INTRON	STIM1	ENSG00000167323.12	ENST00000525403.5:ENST00000526596.2:ENST00000300737.8:ENST00000616714.4:ENST00000527651.5:ENST00000532610.5:ENST00000532919.5:ENST00000530554.5:ENST00000524822.5	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	2.3975	3.36494	4.33238	0.040266	0.0218901	0.161534	0.11491
chr13	69275764	69275863	5508575	0	+	0.424242	(0.408,0.44]	chr13	527074	1	INTRON	INTRON	LINC00383	ENSG00000235221.3	ENST00000657223.1:ENST00000648574.1:ENST00000433664.1	lncRNA	lncRNA	lncRNA	lncRNA	1	28	2	2.3975	3.36494	4.33238	0.040266	0.0218901	0.161534	0.11491
chr13	95261411	95261510	5639476	0	-	0.414141	(0.408,0.44]	chr13	537167	133	INTRON	INTRON	ABCC4	ENSG00000125257.16	ENST00000645237.2:ENST00000643051.1:ENST00000643842.1:ENST00000646439.1:ENST00000643816.1:ENST00000536256.3:ENST00000643556.1:ENST00000629385.1:ENST00000642524.1:ENST00000645532.1:ENST00000644471.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	28	2	2.3975	3.36494	4.33238	0.040266	0.0218901	0.161534	0.11491
chr15	50623070	50623169	6172635	0	-	0.434343	(0.408,0.44]	chr15	588330	29	INTRON	INTRON	TRPM7	ENSG00000092439.16	ENST00000646667.1:ENST00000560955.5:ENST00000560638.1	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	2.3975	3.36494	4.33238	0.040266	0.0218901	0.161534	0.11491
chr19	33105801	33105899	7050229	0	+	0.428571	(0.408,0.44]	chr19	703057	39	INTRON	INTRON	GPATCH1	ENSG00000076650.7	ENST00000592165.1:ENST00000170564.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	28	2	2.3975	3.36494	4.33238	0.040266	0.0218901	0.161534	0.11491
chr22	31094802	31094902	7501690	0	+	0.44	(0.408,0.44]	chr22	765391	1	SS3_PROX	SS3_PROX:INTRON	SMTN	ENSG00000183963.19	ENST00000333137.12:ENST00000347557.6:ENST00000358743.5:ENST00000489337.5:ENST00000619644.4:ENST00000612341.4:ENST00000460658.5:ENST00000455608.5:ENST00000404574.5:ENST00000493335.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	28	2	2.3975	3.36494	4.33238	0.040266	0.0218901	0.161534	0.11491
chr3	183452665	183452764	1579709	0	+	0.414141	(0.408,0.44]	chr3	162930	2	EXON_SMALL	EXON_SMALL:SS5_PROX:INTRON	LINC00888:ENSG00000253092	ENSG00000240024.6:ENSG00000253092.1	ENST00000471496.6:ENST00000686765.1:ENST00000468380.2:ENST00000487386.1:ENST00000517283.1	snoRNA	snoRNA	snoRNA:transcribed_unprocessed_pseudogene	snoRNA:processed_transcript:transcribed_unprocessed_pseudogene	1	28	2	2.3975	3.36494	4.33238	0.040266	0.0218901	0.161534	0.11491
chr5	55950963	55951063	2623153	0	-	0.42	(0.408,0.44]	chr5	249209	1	SS5_PROX	SS5_PROX:INTRON	IL6ST	ENSG00000134352.20	ENST00000381298.7:ENST00000336909.9:ENST00000381287.8:ENST00000651614.1:ENST00000503773.6:ENST00000502326.7:ENST00000381294.7:ENST00000583149.1:ENST00000381293.6:ENST00000381286.7:ENST00000522633.2:ENST00000423954.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	28	2	2.3975	3.36494	4.33238	0.040266	0.0218901	0.161534	0.11491
chr6	100718551	100718651	3169503	0	-	0.42	(0.408,0.44]	chr6	295727	3	SS3_PROX	SS3_PROX:INTRON	ASCC3	ENSG00000112249.14	ENST00000369162.7:ENST00000324696.8:ENST00000522650.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	28	2	2.3975	3.36494	4.33238	0.040266	0.0218901	0.161534	0.11491
chr7	44053650	44053749	3313957	0	+	0.434343	(0.408,0.44]	chr7	307792	3	INTRON	INTRON	DBNL	ENSG00000136279.21	ENST00000490734.6:ENST00000456905.5:ENST00000458579.5:ENST00000440166.5:ENST00000441840.7:ENST00000448521.6:ENST00000452943.5:ENST00000498733.5:ENST00000439815.5:ENST00000464762.5:ENST00000485932.5:ENST00000429716.5:ENST00000468694.5:ENST00000494774.5:ENST00000441904.5:ENST00000411855.5:ENST00000423561.6:ENST00000497184.5:ENST00000432854.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	28	2	2.3975	3.36494	4.33238	0.040266	0.0218901	0.161534	0.11491
chrX	71571748	71571846	7680359	0	+	0.438776	(0.408,0.44]	chrX	786480	33	INTRON	INTRON	OGT	ENSG00000147162.14	ENST00000373719.8:ENST00000488174.5:ENST00000373701.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	28	2	2.3975	3.36494	4.33238	0.040266	0.0218901	0.161534	0.11491
chr5	131321831	131321930	2485215	0	+	0.474747	(0.44,0.476]	chr5	237120	53	INTRON	INTRON	CDC42SE2	ENSG00000158985.14	ENST00000502840.5:ENST00000511432.5:ENST00000506419.5:ENST00000395246.5:ENST00000505065.2:ENST00000504701.5:ENST00000503291.5:ENST00000360515.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	63	2	3.25801	3.3649050000000003	3.4718	0.00248185	0.00136358	0.0460771	0.0336321
chr10	17673378	17673478	4399560	0	+	0.42	(0.408,0.44]	chr10	406162	3	SS5_PROX	SS5_PROX:INTRON	STAM	ENSG00000136738.15	ENST00000377524.8:ENST00000377500.1:ENST00000445846.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	59	2	1.70933	3.3648049999999996	5.02028	0.0189186	0.00303216	0.118303	0.0493883
chr5	66029736	66029836	2371896	0	+	0.48	(0.476,0.515]	chr5	228560	10	INTRON	INTRON	ERBIN	ENSG00000112851.15	ENST00000380943.6:ENST00000416865.6:ENST00000380935.5:ENST00000284037.10:ENST00000380938.6:ENST00000511297.5:ENST00000506030.5:ENST00000508515.1	protein_coding	protein_coding	protein_coding	protein_coding	5	114	2	2.83502	3.364675	3.89433	1.98377e-4	1.72457e-4	0.0129156	0.0113919
chr12	21657138	21657214	5278030	0	-	0.539474	(0.515,0.57]	chr12	503026	3	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	LDHB	ENSG00000111716.14	ENST00000350669.5:ENST00000673047.2:ENST00000396076.5:ENST00000396075.5:ENST00000450584.5:ENST00000539782.1:ENST00000544151.1:ENST00000535112.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	28	2	2.68833	3.3645950000000004	4.04086	0.0197045	0.0184931	0.120063	0.108861
chr6	110995782	110995882	2939441	0	+	0.47	(0.44,0.476]	chr6	276859	36	INTRON	INTRON	RPF2	ENSG00000197498.13	ENST00000368864.8:ENST00000441448.7:ENST00000607388.1:ENST00000425871.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	41	2	2.02558	3.364565	4.70355	0.0363567	0.00383786	0.138959	0.0562562
chr1	223788507	223788607	642778	0	-	0.24	[0,0.28]	chr1	75865	1	SS5_PROX	SS5_PROX:INTRON	TP53BP2	ENSG00000143514.17	ENST00000343537.12:ENST00000391878.6:ENST00000483398.5:ENST00000498843.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	88	2	3.15102	3.364555	3.57809	0.00767596	0.00109779	0.0753665	0.0303708
chr19	5649499	5649599	7005569	0	+	0.39	(0.378,0.408]	chr19	694982	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SAFB	ENSG00000160633.13	ENST00000589863.5:ENST00000588852.2:ENST00000292123.9:ENST00000592224.5:ENST00000586934.5:ENST00000454510.5:ENST00000592707.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	221	2	3.08863	3.364515	3.6404	2.09023e-4	3.04244e-7	0.0131276	2.75296e-4
chr12	111597148	111597248	5413211	0	-	0.52	(0.515,0.57]	chr12	516941	324	INTRON	INTRON	ATXN2	ENSG00000204842.18	ENST00000642389.2:ENST00000608853.5:ENST00000672613.1:ENST00000673436.1:ENST00000643669.2:ENST00000616825.4:ENST00000389153.10:ENST00000550104.5:ENST00000483311.6:ENST00000672335.1:ENST00000673557.1:ENST00000673283.1:ENST00000673449.1:ENST00000535949.5:ENST00000542287.6:ENST00000644883.1:ENST00000647305.1:ENST00000671792.1:ENST00000392645.6:ENST00000672105.1:ENST00000549455.1:ENST00000548492.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	72	2	2.804	3.3644999999999996	3.925	0.00215855	8.71525e-5	0.0417866	0.00783545
chr6	131625957	131626051	3221654	0	-	0.553191	(0.515,0.57]	chr6	299469	6	INTRON	INTRON	MED23	ENSG00000112282.18	ENST00000354577.8:ENST00000368068.8:ENST00000368060.7:ENST00000368058.5:ENST00000368053.8:ENST00000539158.1	protein_coding	protein_coding	protein_coding	protein_coding	3	72	2	2.804	3.3644999999999996	3.925	0.00215855	8.71525e-5	0.0417866	0.00783545
chr2	95973827	95973927	1179557	0	-	0.39	(0.378,0.408]	chr2	126083	109	INTRON	INTRON	ANKRD36C	ENSG00000174501.15	ENST00000295246.7:ENST00000456556.5:ENST00000528268.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	65	2	3.33026	3.36449	3.39872	0.0019852	0.00189824	0.0404516	0.0402736
chr15	65789516	65789615	6209769	0	-	0.353535	(0.35,0.378]	chr15	592617	223	INTRON	INTRON	DENND4A	ENSG00000174485.16	ENST00000443035.8:ENST00000431932.6:ENST00000564674.5:ENST00000568515.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	90	2	3.14947	3.364455	3.57944	0.0010429	4.50721e-4	0.0293983	0.0192381
chr1	1106127	1106149	358711	0	-	0.363636	(0.35,0.378]	chr1	41369	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	C1orf159	ENSG00000131591.18	ENST00000379339.5:ENST00000379325.7:ENST00000421241.7:ENST00000467751.5:ENST00000477196.5:ENST00000434641.5:ENST00000482816.5:ENST00000462097.5:ENST00000475119.5:ENST00000472741.5:ENST00000480643.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	33	2	2.53856	3.36439	4.19022	0.0326077	0.0209891	0.133687	0.122348
chr2	30466213	30466313	727009	0	+	0.37	(0.35,0.378]	chr2	83971	61	INTRON	INTRON	LCLAT1	ENSG00000172954.14	ENST00000466477.5:ENST00000465200.5:ENST00000319406.8:ENST00000379509.8:ENST00000491680.6:ENST00000488144.5:ENST00000465538.5:ENST00000309052.8:ENST00000478015.5:ENST00000476038.5:ENST00000497423.1:ENST00000476535.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	33	2	2.53856	3.36439	4.19022	0.0326077	0.0209891	0.133687	0.122348
chr2	169699659	169699757	907121	0	+	0.367347	(0.35,0.378]	chr2	100108	13	INTRON	INTRON	PHOSPHO2:KLHL23	ENSG00000144362.12:ENSG00000213160.10	ENST00000616481.4:ENST00000616524.4:ENST00000617738.4:ENST00000359744.8:ENST00000438710.5:ENST00000438838.5:ENST00000449906.5:ENST00000498202.6:ENST00000272797.8:ENST00000602521.1	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	2.53856	3.36439	4.19022	0.0326077	0.0209891	0.133687	0.122348
chr21	45521725	45521825	7469678	0	-	0.37	(0.35,0.378]	chr21	761352	52	INTRON	INTRON	SLC19A1	ENSG00000173638.19	ENST00000417954.5:ENST00000567670.5:ENST00000311124.9:ENST00000650808.1:ENST00000380010.8:ENST00000485649.3	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	2.53856	3.36439	4.19022	0.0326077	0.0209891	0.133687	0.122348
chr7	140031757	140031856	3658931	0	-	0.363636	(0.35,0.378]	chr7	339580	27	INTRON	INTRON	PARP12	ENSG00000059378.13	ENST00000263549.8:ENST00000473341.5:ENST00000488726.5:ENST00000489809.5:ENST00000491598.5:ENST00000466597.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	33	2	2.53856	3.36439	4.19022	0.0326077	0.0209891	0.133687	0.122348
chr3	47163027	47163127	1681595	0	-	0.39	(0.378,0.408]	chr3	171625	2	SS5_PROX	SS5_PROX:INTRON	SETD2	ENSG00000181555.22	ENST00000691544.1:ENST00000638947.2:ENST00000409792.4:ENST00000412450.1	protein_coding	protein_coding	protein_coding	protein_coding	5	139	2	2.95431	3.364335	3.77436	4.09829e-4	1.2222e-5	0.0185932	0.00260379
chr1	1798660	1798759	361903	0	-	0.464646	(0.44,0.476]	chr1	42263	46	INTRON	INTRON	GNB1	ENSG00000078369.18	ENST00000610897.4:ENST00000615252.4:ENST00000378609.9:ENST00000471354.1:ENST00000439272.6:ENST00000434686.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	28	2	2.49112	3.3643349999999996	4.23755	0.0315968	0.0263357	0.144381	0.122221
chr1	11988326	11988426	26510	0	+	0.45	(0.44,0.476]	chr1	3073	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	MFN2	ENSG00000116688.18	ENST00000444836.5:ENST00000674817.1:ENST00000675053.1:ENST00000675298.1:ENST00000675817.1:ENST00000675194.1:ENST00000676369.1:ENST00000412236.2:ENST00000675530.1:ENST00000674548.1:ENST00000675959.1:ENST00000675872.1:ENST00000676426.1:ENST00000674706.1:ENST00000674658.1:ENST00000674910.1:ENST00000675231.1:ENST00000490079.5:ENST00000484391.5:ENST00000497302.1:ENST00000235329.10:ENST00000676293.1:ENST00000675919.1:ENST00000675987.1:ENST00000675512.1:ENST00000675113.1:ENST00000675781.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	28	2	2.49112	3.3643349999999996	4.23755	0.0315968	0.0263357	0.144381	0.122221
chr1	15915528	15915627	35346	0	+	0.464646	(0.44,0.476]	chr1	4284	39	INTRON	INTRON	SPEN	ENSG00000065526.12	ENST00000673875.1:ENST00000375759.8:ENST00000442985.1	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	2.49112	3.3643349999999996	4.23755	0.0315968	0.0263357	0.144381	0.122221
chr15	64276584	64276684	6204030	0	-	0.45	(0.44,0.476]	chr15	591743	103	INTRON	INTRON	CSNK1G1:ENSG00000259316	ENSG00000169118.18:ENSG00000259316.12	ENST00000303052.13:ENST00000607537.6:ENST00000561349.6:ENST00000635142.1:ENST00000634654.1:ENST00000634811.1:ENST00000606225.1:ENST00000606793.3:ENST00000634251.1:ENST00000634847.3:ENST00000635324.1:ENST00000635270.1:ENST00000635529.1:ENST00000634318.1:ENST00000635514.1:ENST00000635359.1:ENST00000635160.1:ENST00000635704.1:ENST00000634529.1:ENST00000635511.1:ENST00000635605.1:ENST00000635593.1:ENST00000634259.2:ENST00000560278.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	28	2	2.49112	3.3643349999999996	4.23755	0.0315968	0.0263357	0.144381	0.122221
chr17	35687223	35687323	6600560	0	+	0.45	(0.44,0.476]	chr17	642348	40	INTRON	INTRON	AP2B1	ENSG00000006125.18	ENST00000621914.4:ENST00000620039.4:ENST00000616681.4:ENST00000610402.5:ENST00000612116.5:ENST00000618940.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	28	2	2.49112	3.3643349999999996	4.23755	0.0315968	0.0263357	0.144381	0.122221
chr17	59076214	59076312	6801619	0	-	0.469388	(0.44,0.476]	chr17	671779	1	INTRON	INTRON	TRIM37	ENSG00000108395.14	ENST00000393066.7:ENST00000577554.5:ENST00000262294.12:ENST00000393065.6:ENST00000581468.1:ENST00000582852.1:ENST00000580973.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	28	2	2.49112	3.3643349999999996	4.23755	0.0315968	0.0263357	0.144381	0.122221
chr17	72821306	72821405	6832229	0	-	0.444444	(0.44,0.476]	chr17	675155	30	INTRON	INTRON	SLC39A11	ENSG00000133195.12	ENST00000255559.8:ENST00000542342.6:ENST00000582769.5:ENST00000581581.1:ENST00000579319.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	28	2	2.49112	3.3643349999999996	4.23755	0.0315968	0.0263357	0.144381	0.122221
chr2	222906841	222906940	1021675	0	+	0.454545	(0.44,0.476]	chr2	109278	57	INTRON	INTRON	ACSL3	ENSG00000123983.15	ENST00000392066.7:ENST00000407441.5:ENST00000680251.1:ENST00000679541.1:ENST00000681906.1:ENST00000679545.1:ENST00000679932.1:ENST00000680100.1:ENST00000680475.1:ENST00000680525.1:ENST00000680420.1:ENST00000681326.1:ENST00000681292.1:ENST00000681017.1:ENST00000680382.1:ENST00000535678.2:ENST00000680395.1:ENST00000680736.1:ENST00000679546.1:ENST00000680147.1:ENST00000357430.8:ENST00000681009.1:ENST00000679514.1:ENST00000681697.1:ENST00000680921.1:ENST00000681383.1:ENST00000413316.1:ENST00000679558.1:ENST00000680684.1:ENST00000680424.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	28	2	2.49112	3.3643349999999996	4.23755	0.0315968	0.0263357	0.144381	0.122221
chr3	28306741	28306841	1391204	0	+	0.45	(0.44,0.476]	chr3	145669	80	INTRON	INTRON	CMC1	ENSG00000187118.14	ENST00000477739.1:ENST00000423894.5:ENST00000466830.6:ENST00000334841.10:ENST00000418849.2:ENST00000396610.6:ENST00000468330.1:ENST00000495428.5:ENST00000467644.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	28	2	2.49112	3.3643349999999996	4.23755	0.0315968	0.0263357	0.144381	0.122221
chr5	37457057	37457157	2341170	0	+	0.46	(0.44,0.476]	chr5	226239	133	INTRON	INTRON	WDR70	ENSG00000082068.9	ENST00000504564.1:ENST00000511906.5:ENST00000265107.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	28	2	2.49112	3.3643349999999996	4.23755	0.0315968	0.0263357	0.144381	0.122221
chr5	119204135	119204235	2461131	0	+	0.46	(0.44,0.476]	chr5	235774	3	INTRON	INTRON	DMXL1	ENSG00000172869.15	ENST00000539542.6:ENST00000311085.8:ENST00000502516.5:ENST00000511622.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	28	2	2.49112	3.3643349999999996	4.23755	0.0315968	0.0263357	0.144381	0.122221
chr6	87322978	87323078	2914379	0	+	0.47	(0.44,0.476]	chr6	275345	1	SS5_PROX	SS5_PROX:INTRON	SMIM8	ENSG00000111850.11	ENST00000608353.5:ENST00000392863.6:ENST00000229570.9:ENST00000448282.6:ENST00000608525.5:ENST00000369572.3:ENST00000608868.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	28	2	2.49112	3.3643349999999996	4.23755	0.0315968	0.0263357	0.144381	0.122221
chr6	157153754	157153854	3010947	0	+	0.47	(0.44,0.476]	chr6	281186	3	SS3_PROX	SS3_PROX:INTRON	ARID1B	ENSG00000049618.24	ENST00000346085.10:ENST00000636930.2:ENST00000647938.1:ENST00000350026.10:ENST00000674190.1:ENST00000414678.7:ENST00000319584.11:ENST00000635849.1:ENST00000637904.1:ENST00000637810.1:ENST00000637015.1:ENST00000636426.1:ENST00000637568.1:ENST00000635957.1:ENST00000400790.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	28	2	2.49112	3.3643349999999996	4.23755	0.0315968	0.0263357	0.144381	0.122221
chr7	77728616	77728716	3343391	0	+	0.47	(0.44,0.476]	chr7	311432	309	INTRON	INTRON	RSBN1L	ENSG00000187257.16	ENST00000334955.13:ENST00000445288.5	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	2.49112	3.3643349999999996	4.23755	0.0315968	0.0263357	0.144381	0.122221
chr21	39297921	39298020	7465385	0	-	0.292929	(0.28,0.32]	chr21	760563	16	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	BRWD1	ENSG00000185658.14	ENST00000333229.6:ENST00000342449.8:ENST00000380800.7:ENST00000341322.4	protein_coding	protein_coding	protein_coding	protein_coding	6	160	2	2.6203	3.36432	4.10834	4.02303e-4	1.53575e-4	0.0180218	0.0113219
chr11	62793957	62794057	4961301	0	-	0.43	(0.408,0.44]	chr11	466875	3	SS5_PROX	SS5_PROX:INTRON	NXF1	ENSG00000162231.14	ENST00000531709.6:ENST00000294172.7:ENST00000532297.5:ENST00000527902.5:ENST00000533048.5:ENST00000533499.1:ENST00000527497.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	38	2	2.21238	3.36421	4.51604	0.0193525	0.0137419	0.119831	0.0949306
chr17	47544710	47544810	6621722	0	+	0.49	(0.476,0.515]	chr17	645841	128	INTRON	INTRON	NPEPPS	ENSG00000141279.17	ENST00000525007.5:ENST00000525037.5:ENST00000677710.1:ENST00000530173.6:ENST00000526247.6:ENST00000677226.1:ENST00000322157.9:ENST00000678461.1:ENST00000532729.6:ENST00000533573.5:ENST00000677120.1:ENST00000678909.1:ENST00000678496.1:ENST00000678262.1:ENST00000677370.1:ENST00000677664.1:ENST00000528751.6:ENST00000527298.5:ENST00000534691.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	38	2	2.19809	3.36416	4.53023	0.020317	0.0119748	0.121522	0.0899583
chr17	6937876	6937976	6717584	0	-	0.56	(0.515,0.57]	chr17	658651	98	INTRON	INTRON	ALOX12-AS1	ENSG00000215067.11	ENST00000653385.1:ENST00000659418.1:ENST00000572385.5:ENST00000570562.5:ENST00000575889.5	lncRNA	lncRNA	lncRNA	lncRNA	5	98	2	2.51725	3.36402	4.21079	8.36453e-4	2.50651e-5	0.0263691	0.00413279
chr10	48404153	48404252	4431968	0	+	0.474747	(0.44,0.476]	chr10	408584	20	INTRON	INTRON	MAPK8	ENSG00000107643.17	ENST00000395611.7:ENST00000432379.5:ENST00000374189.6:ENST00000429041.6:ENST00000374179.8:ENST00000426557.5:ENST00000476134.1:ENST00000360332.7:ENST00000374182.7:ENST00000374176.8:ENST00000374174.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	28	2	2.29425	3.36401	4.43377	0.0518406	0.0162803	0.176696	0.101453
chr11	96339382	96339482	5024330	0	-	0.45	(0.44,0.476]	chr11	473809	2455	INTRON	INTRON	MAML2	ENSG00000184384.14	ENST00000524717.6	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	2.29425	3.36401	4.43377	0.0518406	0.0162803	0.176696	0.101453
chr12	6596920	6597015	5259553	0	-	0.452632	(0.44,0.476]	chr12	500794	4	INTRON	INTRON	CHD4	ENSG00000111642.16	ENST00000645022.1:ENST00000544040.7:ENST00000544484.6:ENST00000357008.7:ENST00000642810.1:ENST00000643335.1:ENST00000643815.1:ENST00000646806.1:ENST00000644137.1:ENST00000642879.1:ENST00000645645.1:ENST00000642594.1:ENST00000646268.1:ENST00000645095.1:ENST00000646608.1:ENST00000645005.1:ENST00000644801.1:ENST00000644289.1:ENST00000646366.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	28	2	2.29425	3.36401	4.43377	0.0518406	0.0162803	0.176696	0.101453
chr12	120806617	120806717	5434927	0	-	0.46	(0.44,0.476]	chr12	519651	147	INTRON	INTRON	SPPL3	ENSG00000157837.16	ENST00000353487.7:ENST00000536996.5:ENST00000543608.5:ENST00000543854.5:ENST00000543181.5:ENST00000540091.1	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	2.29425	3.36401	4.43377	0.0518406	0.0162803	0.176696	0.101453
chr13	19862566	19862661	5553347	0	-	0.452632	(0.44,0.476]	chr13	530774	1	SS3_PROX	SS3_PROX:INTRON	ZMYM5	ENSG00000132950.19	ENST00000337963.9:ENST00000535942.5:ENST00000382907.8:ENST00000382905.8:ENST00000467542.5:ENST00000495534.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	28	2	2.29425	3.36401	4.43377	0.0518406	0.0162803	0.176696	0.101453
chr16	66564600	66564698	6364893	0	+	0.469388	(0.44,0.476]	chr16	611242	10	INTRON	INTRON	CKLF	ENSG00000217555.13	ENST00000534692.1:ENST00000345436.8:ENST00000351137.8:ENST00000362093.4:ENST00000264001.9:ENST00000417030.2:ENST00000563092.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	28	2	2.29425	3.36401	4.43377	0.0518406	0.0162803	0.176696	0.101453
chr17	36515438	36515519	6759451	0	-	0.45679	(0.44,0.476]	chr17	664558	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MYO19	ENSG00000278259.5	ENST00000614623.5:ENST00000610992.4:ENST00000621550.4:ENST00000610930.4:ENST00000621344.4:ENST00000620640.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	28	2	2.29425	3.36401	4.43377	0.0518406	0.0162803	0.176696	0.101453
chr17	37201281	37201381	6760939	0	-	0.45	(0.44,0.476]	chr17	664749	4	INTRON	INTRON	ACACA	ENSG00000278540.5	ENST00000616317.5:ENST00000614428.4:ENST00000612895.4:ENST00000619546.4:ENST00000617649.4:ENST00000614450.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	28	2	2.29425	3.36401	4.43377	0.0518406	0.0162803	0.176696	0.101453
chr19	1060482	1060582	6993556	0	+	0.47	(0.44,0.476]	chr19	692686	10	INTRON	INTRON	ABCA7	ENSG00000064687.13	ENST00000433129.6:ENST00000263094.11:ENST00000435683.7:ENST00000673773.1:ENST00000525073.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	28	2	2.29425	3.36401	4.43377	0.0518406	0.0162803	0.176696	0.101453
chr19	21320488	21320587	7158551	0	-	0.474747	(0.44,0.476]	chr19	723671	95	INTRON	INTRON	ZNF708	ENSG00000182141.10	ENST00000356929.3:ENST00000598046.5:ENST00000601295.1:ENST00000602023.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	28	2	2.29425	3.36401	4.43377	0.0518406	0.0162803	0.176696	0.101453
chr2	53786555	53786646	1118707	0	-	0.461538	(0.44,0.476]	chr2	119831	4	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	ASB3	ENSG00000115239.24	ENST00000263634.8:ENST00000406625.6:ENST00000394717.3:ENST00000406687.5:ENST00000498475.2:ENST00000470916.5:ENST00000459916.1:ENST00000414369.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	28	2	2.29425	3.36401	4.43377	0.0518406	0.0162803	0.176696	0.101453
chr7	105377350	105377450	3603790	0	-	0.47	(0.44,0.476]	chr7	336161	704	INTRON	INTRON	SRPK2	ENSG00000135250.17	ENST00000393651.8:ENST00000482897.5:ENST00000460391.5:ENST00000462282.5:ENST00000465112.5:ENST00000482862.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	28	2	2.29425	3.36401	4.43377	0.0518406	0.0162803	0.176696	0.101453
chr9	4795222	4795322	4094888	0	+	0.47	(0.44,0.476]	chr9	373155	16	INTRON	INTRON	RCL1	ENSG00000120158.12	ENST00000381750.9:ENST00000381732.3:ENST00000442869.5:ENST00000473230.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	28	2	2.29425	3.36401	4.43377	0.0518406	0.0162803	0.176696	0.101453
chrX	77583442	77583541	7845398	0	-	0.474747	(0.44,0.476]	chrX	800035	73	INTRON	INTRON	ATRX	ENSG00000085224.23	ENST00000373344.11:ENST00000395603.7:ENST00000480283.5:ENST00000675732.1:ENST00000623706.3:ENST00000623316.1:ENST00000636868.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	28	2	2.29425	3.36401	4.43377	0.0518406	0.0162803	0.176696	0.101453
chr13	95233311	95233411	5639191	0	-	0.41	(0.408,0.44]	chr13	537151	222	INTRON	INTRON	ABCC4	ENSG00000125257.16	ENST00000645237.2:ENST00000643051.1:ENST00000643842.1:ENST00000646439.1:ENST00000643816.1:ENST00000536256.3:ENST00000643556.1:ENST00000629385.1:ENST00000642524.1:ENST00000645532.1:ENST00000644471.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	120	2	2.64944	3.3640099999999995	4.07858	0.00481947	1.51017e-6	0.060277	7.36428e-4
chr21	46278413	46278511	7471354	0	-	0.438776	(0.408,0.44]	chr21	761689	3	INTRON	INTRON	MCM3AP	ENSG00000160294.11	ENST00000397708.1:ENST00000291688.6	protein_coding	protein_coding	protein_coding	protein_coding	3	84	2	2.75707	3.363905	3.97074	0.00317496	8.66152e-5	0.0503542	0.00783027
chr1	35632141	35632240	422224	0	-	0.262626	[0,0.28]	chr1	50867	4	INTRON	INTRON	PSMB2	ENSG00000126067.12	ENST00000373237.4	protein_coding	protein_coding	protein_coding	protein_coding	2	47	2	1.84147	3.3638600000000003	4.88625	0.0610416	0.0173315	0.193277	0.104099
chr9	37883324	37883424	4252582	0	-	0.21	[0,0.28]	chr9	391641	13	INTRON	INTRON	SLC25A51	ENSG00000122696.14	ENST00000496760.5	protein_coding	processed_transcript	protein_coding	processed_transcript	2	47	2	1.84147	3.3638600000000003	4.88625	0.0610416	0.0173315	0.193277	0.104099
chr11	95069256	95069354	4852216	0	+	0.285714	(0.28,0.32]	chr11	452615	13	UTR3	UTR3:EXON_MRNA	SRSF8	ENSG00000263465.5	ENST00000587424.3	protein_coding	protein_coding	protein_coding	protein_coding	2	48	2	1.76293	3.363735	4.96454	0.0766478	0.00344078	0.196164	0.0539802
chr4	17955870	17955970	2117632	0	-	0.4	(0.378,0.408]	chr4	209129	462	INTRON	INTRON	LCORL	ENSG00000178177.17	ENST00000635767.2:ENST00000326877.8:ENST00000675131.1:ENST00000675143.1:ENST00000637787.1:ENST00000675605.1:ENST00000510451.5:ENST00000510121.5:ENST00000675927.1:ENST00000382224.5:ENST00000382226.5:ENST00000676061.1:ENST00000674942.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	40	2	2.41037	3.3636799999999996	4.31699	0.0250408	0.0100185	0.12011	0.0880217
chr22	41829786	41829885	7525973	0	+	0.535354	(0.515,0.57]	chr22	769348	41	UTR3	UTR3:EXON_MRNA	CCDC134	ENSG00000100147.14	ENST00000255784.6	protein_coding	protein_coding	protein_coding	protein_coding	2	54	2	3.35609	3.36367	3.37125	0.00174131	0.00136343	0.0375363	0.0339121
chr6	43526984	43527064	3096815	0	-	0.35	(0.32,0.35]	chr6	289981	4	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	XPO5	ENSG00000124571.18	ENST00000265351.12:ENST00000488195.6:ENST00000455285.2:ENST00000486936.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	97	2	2.69421	3.3635099999999998	4.03281	0.00484681	8.51676e-5	0.0605691	0.00780562
chr21	21380506	21380606	7382826	0	+	0.48	(0.476,0.515]	chr21	752659	61	INTRON	INTRON	NCAM2	ENSG00000154654.15	ENST00000400546.6:ENST00000284894.8	protein_coding	protein_coding	protein_coding	protein_coding	2	62	2	3.35059	3.363455	3.37632	0.00195267	0.00171515	0.0400465	0.0381936
chr9	94169076	94169176	4161097	0	+	0.28	[0,0.28]	chr9	379417	23	INTRON	INTRON	MIRLET7A1HG	ENSG00000269929.4	ENST00000652769.1:ENST00000652620.1:ENST00000602703.1:ENST00000660581.1	lncRNA	lncRNA	lncRNA	lncRNA	3	57	2	1.66929	3.363385	5.05748	0.0537506	0.0113653	0.180803	0.0886611
chr2	176284087	176284187	925359	0	+	0.39	(0.378,0.408]	chr2	101669	133	INTRON	INTRON	MTX2	ENSG00000128654.14	ENST00000420864.5:ENST00000249442.11:ENST00000423461.6:ENST00000443241.5:ENST00000452865.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	103	2	2.81806	3.363345	3.90863	5.36236e-4	2.19981e-4	0.0209287	0.0135522
chr6	47513227	47513327	2873920	0	+	0.37	(0.35,0.378]	chr6	272731	94	INTRON	INTRON	CD2AP	ENSG00000198087.7	ENST00000359314.5	protein_coding	protein_coding	protein_coding	protein_coding	2	68	2	2.99044	3.363265	3.73609	0.00894806	3.31057e-4	0.0799922	0.0161599
chr22	23271792	23271892	7484128	0	+	0.4	(0.378,0.408]	chr22	763580	2	SS5_PROX	SS5_PROX:INTRON	BCR	ENSG00000186716.21	ENST00000359540.7:ENST00000305877.13:ENST00000427791.1	protein_coding	protein_coding	protein_coding	protein_coding	4	116	2	3.33464	3.3632	3.39176	2.59942e-4	1.17224e-4	0.0148796	0.00929802
chr1	40383977	40384076	81546	0	+	0.474747	(0.44,0.476]	chr1	10553	89	INTRON	INTRON	SMAP2	ENSG00000084070.12	ENST00000435168.6:ENST00000372718.8:ENST00000372708.5	protein_coding	protein_coding	protein_coding	protein_coding	2	62	2	3.26669	3.36313	3.45957	0.00305435	0.00106385	0.0493883	0.0300133
chr9	131213540	131213638	4216538	0	+	0.418367	(0.408,0.44]	chr9	386674	10	EXON_MRNA	EXON_MRNA:INTRON	NUP214	ENSG00000126883.19	ENST00000695497.1:ENST00000695498.1:ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000524578.6:ENST00000453861.6:ENST00000483497.6:ENST00000695500.1:ENST00000650694.1:ENST00000695501.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	41	2	1.94273	3.363105	4.78348	0.0456237	0.00290352	0.149888	0.0494641
chr15	68115467	68115566	6056568	0	+	0.323232	(0.32,0.35]	chr15	576567	272	INTRON	INTRON	PIAS1	ENSG00000033800.14	ENST00000564915.5:ENST00000249636.11:ENST00000562190.1:ENST00000545237.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	44	2	2.45306	3.3630299999999997	4.273	0.0368357	0.00916394	0.138959	0.0855292
chr12	101795873	101795967	5398629	0	-	0.340426	(0.32,0.35]	chr12	514974	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	GNPTAB	ENSG00000111670.16	ENST00000299314.12:ENST00000549940.5:ENST00000647144.1:ENST00000392919.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	32	2	2.78073	3.36301	3.94529	0.0693433	0.01481	0.184298	0.106702
chr6	17696200	17696299	3066107	0	-	0.333333	(0.32,0.35]	chr6	284872	72	INTRON	INTRON	NUP153	ENSG00000124789.12	ENST00000613258.4:ENST00000537253.5:ENST00000262077.3	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	2.78073	3.36301	3.94529	0.0693433	0.01481	0.184298	0.106702
chr11	68313504	68313604	4815944	0	+	0.57	(0.515,0.57]	chr11	448753	3	INTRON	INTRON	LRP5	ENSG00000162337.12	ENST00000294304.12:ENST00000529993.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	27	2	2.12971	3.3630050000000002	4.5963	0.0757903	0.00370287	0.194427	0.0561162
chr17	81612390	81612486	6849356	0	-	0.541667	(0.515,0.57]	chr17	678215	18	INTRON	INTRON	NPLOC4	ENSG00000182446.14	ENST00000331134.11:ENST00000374747.9:ENST00000574897.5:ENST00000570324.1:ENST00000574344.5:ENST00000625705.1:ENST00000570300.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	27	2	2.12971	3.3630050000000002	4.5963	0.0757903	0.00370287	0.194427	0.0561162
chr20	31715048	31715148	7325294	0	-	0.52	(0.515,0.57]	chr20	745996	301	INTRON	INTRON	BCL2L1	ENSG00000171552.14	ENST00000376055.9:ENST00000376062.6:ENST00000307677.5:ENST00000420488.6:ENST00000439267.2:ENST00000678563.1:ENST00000456404.6:ENST00000676942.1:ENST00000676582.1:ENST00000434194.2:ENST00000677194.1:ENST00000678671.1:ENST00000677494.1:ENST00000422920.2:ENST00000450273.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	27	2	2.12971	3.3630050000000002	4.5963	0.0757903	0.00370287	0.194427	0.0561162
chr3	37295377	37295477	1396281	0	+	0.52	(0.515,0.57]	chr3	146362	3	SS5_PROX	SS5_PROX:INTRON	GOLGA4	ENSG00000144674.17	ENST00000435830.6:ENST00000444882.5:ENST00000356847.8:ENST00000450863.6:ENST00000361924.7:ENST00000429018.5:ENST00000437131.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	27	2	2.12971	3.3630050000000002	4.5963	0.0757903	0.00370287	0.194427	0.0561162
chr9	37236507	37236607	4118822	0	+	0.55	(0.515,0.57]	chr9	375389	496	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000461038.5:ENST00000488607.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	27	2	2.12971	3.3630050000000002	4.5963	0.0757903	0.00370287	0.194427	0.0561162
chr1	32660057	32660156	65919	0	+	0.313131	(0.28,0.32]	chr1	8422	21	INTRON	INTRON	RBBP4	ENSG00000162521.19	ENST00000414241.7:ENST00000527118.5:ENST00000373493.10:ENST00000401893.7:ENST00000524393.5:ENST00000492348.6:ENST00000526193.5:ENST00000373485.5:ENST00000477563.6:ENST00000458695.6:ENST00000445722.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	194	2	3.13963	3.362985	3.58634	1.33246e-4	4.83737e-5	0.0105174	0.00567485
chr20	63275176	63275276	7299650	0	+	0.38	(0.378,0.408]	chr20	742746	2	SS3_PROX	SS3_PROX:INTRON	ARFGAP1	ENSG00000101199.13	ENST00000519273.6:ENST00000519604.5:ENST00000523114.5:ENST00000547204.5:ENST00000522959.5:ENST00000549047.5:ENST00000370283.9:ENST00000523460.5:ENST00000520485.5:ENST00000524192.6:ENST00000519531.5:ENST00000370275.8:ENST00000518601.6:ENST00000353546.7:ENST00000522403.6:ENST00000550188.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	54	2	1.84831	3.362965	4.87762	0.0172621	0.00553849	0.111749	0.0648867
chr10	908207	908307	4542352	0	-	0.51	(0.476,0.515]	chr10	419304	48	INTRON	INTRON	LARP4B	ENSG00000107929.16	ENST00000316157.8:ENST00000690516.1:ENST00000476529.5:ENST00000406525.6:ENST00000481118.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	83	2	2.73564	3.3629	3.99016	0.00333144	7.96444e-5	0.0512081	0.00742553
chr9	6478601	6478698	4099473	0	+	0.350515	(0.35,0.378]	chr9	373565	4	INTRON	INTRON	UHRF2	ENSG00000147854.17	ENST00000468435.6:ENST00000276893.10:ENST00000484159.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	32	2	2.32443	3.3628549999999997	4.40128	0.0544216	0.0120289	0.164972	0.0962115
chr11	63863784	63863884	4801118	0	+	0.53	(0.515,0.57]	chr11	445036	134	INTRON	INTRON	MARK2	ENSG00000072518.22	ENST00000377810.8:ENST00000361128.9:ENST00000508192.5:ENST00000350490.11:ENST00000402010.8:ENST00000502399.7:ENST00000425897.3:ENST00000679216.1:ENST00000513765.7:ENST00000543220.5	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	2.43589	3.3625499999999997	4.28921	0.0370871	0.00990051	0.139194	0.0877296
chr12	132757527	132757626	5449538	0	-	0.525253	(0.515,0.57]	chr12	521956	25	EXON_MRNA	EXON_MRNA:INTRON	ANKLE2	ENSG00000176915.15	ENST00000357997.10:ENST00000539605.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	27	2	2.43589	3.3625499999999997	4.28921	0.0370871	0.00990051	0.139194	0.0877296
chr4	152439779	152439879	2274125	0	-	0.52	(0.515,0.57]	chr4	221114	269	INTRON	INTRON	FBXW7	ENSG00000109670.16	ENST00000281708.10:ENST00000603548.6:ENST00000604872.6:ENST00000647166.1:ENST00000643834.1:ENST00000642901.1	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	2.43589	3.3625499999999997	4.28921	0.0370871	0.00990051	0.139194	0.0877296
chrX	130104826	130104926	7887535	0	-	0.57	(0.515,0.57]	chrX	803067	229	INTRON	INTRON	ELF4	ENSG00000102034.18	ENST00000308167.10:ENST00000335997.11:ENST00000434609.1	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	2.43589	3.3625499999999997	4.28921	0.0370871	0.00990051	0.139194	0.0877296
chr11	9393315	9393414	4729497	0	+	0.353535	(0.35,0.378]	chr11	437827	6	INTRON	INTRON	IPO7	ENSG00000205339.10	ENST00000379719.8:ENST00000533233.1:ENST00000527431.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	35	2	2.78212	3.362515	3.94291	0.0374229	0.0168532	0.155878	0.103549
chr12	55775206	55775305	5332396	0	-	0.30303	(0.28,0.32]	chr12	509126	142	INTRON	INTRON	SARNP	ENSG00000205323.9	ENST00000546604.5:ENST00000552884.5:ENST00000336133.8:ENST00000552080.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	53	2	1.85772	3.362515	4.86731	0.0300199	0.0116253	0.142135	0.0889104
chr4	70822139	70822236	2155636	0	-	0.329897	(0.32,0.35]	chr4	212358	9	INTRON	INTRON	GRSF1	ENSG00000132463.15	ENST00000254799.11:ENST00000505068.5:ENST00000499044.6:ENST00000502323.5:ENST00000514161.5:ENST00000506453.1:ENST00000508091.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	58	2	1.76503	3.3623700000000003	4.95971	0.0240772	0.00663522	0.129859	0.0703181
chr19	19446015	19446115	7035751	0	+	0.41	(0.408,0.44]	chr19	701448	94	INTRON	INTRON	GATAD2A	ENSG00000167491.18	ENST00000494516.6:ENST00000360315.7:ENST00000609040.5:ENST00000417582.6:ENST00000683918.1:ENST00000432704.5:ENST00000404158.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	63	2	3.00595	3.362345	3.71874	0.00781452	3.17998e-4	0.0759016	0.0159645
chr7	138490992	138491092	3434948	0	+	0.43	(0.408,0.44]	chr7	319959	293	INTRON	INTRON	TRIM24	ENSG00000122779.18	ENST00000343526.9:ENST00000415680.6:ENST00000497516.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	63	2	3.00595	3.362345	3.71874	0.00781452	3.17998e-4	0.0759016	0.0159645
chr4	78867309	78867408	1982311	0	+	0.353535	(0.35,0.378]	chr4	198529	12	INTRON	INTRON	BMP2K	ENSG00000138756.19	ENST00000389010.7:ENST00000502613.3:ENST00000502871.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	167	2	3.25279	3.3623149999999997	3.47184	1.48145e-4	1.56751e-5	0.0111233	0.00298814
chr1	186318264	186318346	603798	0	-	0.487805	(0.476,0.515]	chr1	71957	3	SS5_PROX	SS5_PROX:INTRON	TPR	ENSG00000047410.14	ENST00000367478.9	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	2.47949	3.36225	4.24501	0.0326974	0.0247713	0.145164	0.12011
chr17	81612775	81612873	6849360	0	-	0.510204	(0.476,0.515]	chr17	678216	2	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	NPLOC4	ENSG00000182446.14	ENST00000331134.11:ENST00000374747.9:ENST00000574897.5:ENST00000570324.1:ENST00000574344.5:ENST00000625705.1:ENST00000570300.1:ENST00000571562.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	28	2	2.47949	3.36225	4.24501	0.0326974	0.0247713	0.145164	0.12011
chr18	55284186	55284286	6975612	0	-	0.51	(0.476,0.515]	chr18	690311	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	TCF4	ENSG00000196628.20	ENST00000354452.8:ENST00000616053.4:ENST00000636400.2:ENST00000356073.8:ENST00000643689.1:ENST00000636751.2:ENST00000635822.2:ENST00000637115.2:ENST00000638154.3:ENST00000637239.2:ENST00000637250.2:ENST00000636822.2:ENST00000635990.2:ENST00000637923.2:ENST00000637169.2:ENST00000570287.6:ENST00000564999.5:ENST00000629387.2:ENST00000568673.5:ENST00000457482.7:ENST00000543082.5:ENST00000540999.5:ENST00000537578.5:ENST00000562680.5:ENST00000568740.5:ENST00000537856.7:ENST00000544241.6:ENST00000675707.1:ENST00000561992.5:ENST00000561831.7:ENST00000674764.1:ENST00000565018.6:ENST00000566279.5:ENST00000566286.5:ENST00000567880.5:ENST00000564228.5:ENST00000398339.5:ENST00000564403.6:ENST00000570177.6:ENST00000626584.2:ENST00000630720.3:ENST00000563760.5:ENST00000628689.2:ENST00000629343.2:ENST00000628636.2:ENST00000627136.2:ENST00000628078.2:ENST00000562030.3:ENST00000563686.5:ENST00000566514.5:ENST00000630828.2:ENST00000562607.5:ENST00000569012.5:ENST00000630268.2:ENST00000630319.2:ENST00000568169.5:ENST00000625925.2:ENST00000566777.5:ENST00000565580.3:ENST00000630712.2:ENST00000568186.5:ENST00000562638.5:ENST00000631043.2:ENST00000565908.6:ENST00000627685.2:ENST00000626595.2:ENST00000637068.1:ENST00000626425.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	28	2	2.47949	3.36225	4.24501	0.0326974	0.0247713	0.145164	0.12011
chr19	2777492	2777578	7116702	0	-	0.488372	(0.476,0.515]	chr19	715509	1	EXON_LNCRNA	EXON_LNCRNA:INTRON	SGTA	ENSG00000104969.11	ENST00000221566.7:ENST00000678109.1:ENST00000676984.1:ENST00000677513.1:ENST00000676943.1:ENST00000677731.1:ENST00000679138.1:ENST00000677562.1:ENST00000678595.1:ENST00000677754.1:ENST00000677149.1:ENST00000678577.1:ENST00000589251.5:ENST00000586711.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	28	2	2.47949	3.36225	4.24501	0.0326974	0.0247713	0.145164	0.12011
chr3	172155565	172155665	1560710	0	+	0.48	(0.476,0.515]	chr3	161551	66	INTRON	INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000421757.5:ENST00000469491.5:ENST00000336824.8:ENST00000423424.5:ENST00000416957.5:ENST00000478016.1:ENST00000443501.1:ENST00000476794.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	28	2	2.47949	3.36225	4.24501	0.0326974	0.0247713	0.145164	0.12011
chr4	128089900	128090000	2042885	0	+	0.51	(0.476,0.515]	chr4	202868	72	INTRON	INTRON	LARP1B	ENSG00000138709.19	ENST00000512292.5:ENST00000326639.11:ENST00000508819.5:ENST00000394288.7:ENST00000432347.6:ENST00000649983.1:ENST00000650359.1:ENST00000648358.1:ENST00000507377.1	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	2.47949	3.36225	4.24501	0.0326974	0.0247713	0.145164	0.12011
chr7	137908936	137909034	3654804	0	-	0.479592	(0.476,0.515]	chr7	339339	1	INTRON	INTRON	CREB3L2	ENSG00000182158.16	ENST00000330387.11:ENST00000456390.5	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	2.47949	3.36225	4.24501	0.0326974	0.0247713	0.145164	0.12011
chr9	40998384	40998483	4123566	0	+	0.494949	(0.476,0.515]	chr9	375956	33	INTRON	INTRON	FRG1HP	ENSG00000276291.6	ENST00000690347.1:ENST00000686028.1:ENST00000688017.1:ENST00000610803.5:ENST00000692434.1:ENST00000687775.1:ENST00000611606.5:ENST00000615326.5:ENST00000690313.1:ENST00000618340.5:ENST00000693485.1:ENST00000686736.1:ENST00000689683.1:ENST00000617940.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	1	28	2	2.47949	3.36225	4.24501	0.0326974	0.0247713	0.145164	0.12011
chr17	38853629	38853697	6765143	0	-	0.573529	(0.57,1]	chr17	665409	1	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	RPL23	ENSG00000125691.14	ENST00000479035.7:ENST00000394333.5:ENST00000394332.5:ENST00000584912.5:ENST00000577407.5:ENST00000577760.1:ENST00000584056.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	122	2	3.3263	3.36224	3.39818	2.80298e-6	4.60347e-7	0.00107271	3.89551e-4
chr18	9519506	9519605	6871576	0	+	0.363636	(0.35,0.378]	chr18	680729	23	UTR3	UTR3:EXON_MRNA:INTRON	RALBP1	ENSG00000017797.13	ENST00000019317.8:ENST00000383432.8:ENST00000609094.2	protein_coding	protein_coding	protein_coding	protein_coding	3	50	2	2.15877	3.3621350000000003	4.5655	0.0155464	0.0102036	0.100909	0.089002
chr19	9577428	9577527	7132911	0	-	0.292929	(0.28,0.32]	chr19	718825	80	INTRON	INTRON	ZNF121	ENSG00000197961.12	ENST00000320451.7:ENST00000586602.5	protein_coding	protein_coding	protein_coding	protein_coding	2	49	2	1.96376	3.3620349999999997	4.76031	0.0480066	0.00656106	0.153019	0.0735539
chrX	139916725	139916825	7905742	0	-	0.3	(0.28,0.32]	chrX	804457	846	INTRON	INTRON	ATP11C	ENSG00000101974.15	ENST00000370557.5:ENST00000682941.1:ENST00000485626.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	49	2	1.96376	3.3620349999999997	4.76031	0.0480066	0.00656106	0.153019	0.0735539
chr1	92760712	92760812	507925	0	-	0.43	(0.408,0.44]	chr1	59886	237	INTRON	INTRON	EVI5	ENSG00000067208.16	ENST00000370331.5:ENST00000540033.2:ENST00000684568.2:ENST00000474806.1:ENST00000466778.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	39	2	2.39162	3.362	4.33238	0.0218901	0.0105837	0.11491	0.0911864
chr2	10797857	10797957	1066574	0	-	0.53	(0.515,0.57]	chr2	113872	1	SS3_PROX	SS3_PROX:INTRON	PDIA6	ENSG00000143870.13	ENST00000272227.8:ENST00000381611.8:ENST00000404371.6:ENST00000617249.4:ENST00000540494.5:ENST00000404824.2:ENST00000489662.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	58	2	2.68833	3.361975	4.03562	0.0184931	4.64806e-5	0.108861	0.00555027
chr12	131940144	131940236	5250116	0	+	0.5	(0.476,0.515]	chr12	499267	5	INTRON	INTRON	PUS1	ENSG00000177192.14	ENST00000443358.6:ENST00000322060.9:ENST00000376649.8:ENST00000542167.2:ENST00000535067.5:ENST00000537484.1	protein_coding	protein_coding	protein_coding	protein_coding	2	41	2	2.10874	3.361965	4.61519	0.0285608	0.00528365	0.12666	0.0656295
chr16	89342306	89342403	6542099	0	-	0.505155	(0.476,0.515]	chr16	634211	25	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000647238.1:ENST00000644045.1:ENST00000643147.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	41	2	2.10874	3.361965	4.61519	0.0285608	0.00528365	0.12666	0.0656295
chr5	81991994	81992091	2402902	0	+	0.484536	(0.476,0.515]	chr5	232115	1	EXON_LNCRNA	EXON_LNCRNA:INTRON	ATG10:ATG10-IT1	ENSG00000152348.16:ENSG00000236447.2	ENST00000282185.8:ENST00000355178.8:ENST00000458350.7:ENST00000513443.5:ENST00000504770.5:ENST00000513634.1:ENST00000396880.3	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:nonsense_mediated_decay:lncRNA	2	41	2	2.10874	3.361965	4.61519	0.0285608	0.00528365	0.12666	0.0656295
chr10	119067259	119067358	4704786	0	-	0.484848	(0.476,0.515]	chr10	433990	13	INTRON	INTRON	EIF3A	ENSG00000107581.13	ENST00000369144.8:ENST00000541549.2	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	2.28264	3.36196	4.44128	0.0534132	0.0151924	0.179876	0.0994339
chr11	102353334	102353434	4855220	0	+	0.49	(0.476,0.515]	chr11	452789	20	INTRON	INTRON	BIRC2	ENSG00000110330.10	ENST00000227758.7:ENST00000530675.5:ENST00000533742.5:ENST00000532672.5:ENST00000531259.5:ENST00000527910.5:ENST00000613397.4:ENST00000528344.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	28	2	2.28264	3.36196	4.44128	0.0534132	0.0151924	0.179876	0.0994339
chr12	113230363	113230463	5231616	0	+	0.51	(0.476,0.515]	chr12	496113	30	INTRON	INTRON	TPCN1	ENSG00000186815.13	ENST00000552642.5:ENST00000547275.5:ENST00000552985.5:ENST00000550873.5:ENST00000551096.5:ENST00000551099.5:ENST00000552897.5:ENST00000550785.5:ENST00000335509.11:ENST00000549279.1:ENST00000552077.5:ENST00000541517.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	28	2	2.28264	3.36196	4.44128	0.0534132	0.0151924	0.179876	0.0994339
chr17	82820121	82820221	6694895	0	+	0.5	(0.476,0.515]	chr17	654903	48	INTRON	INTRON	TBCD	ENSG00000141556.22	ENST00000682479.1:ENST00000682722.1:ENST00000684464.1:ENST00000684544.1:ENST00000681983.1:ENST00000684361.1:ENST00000683184.1:ENST00000683282.1:ENST00000684408.1:ENST00000355528.9:ENST00000683444.1:ENST00000684776.1:ENST00000683041.1:ENST00000684760.1:ENST00000684349.1:ENST00000682213.1:ENST00000683009.1:ENST00000682921.1:ENST00000539345.6:ENST00000684000.1:ENST00000684188.1:ENST00000684429.1:ENST00000682610.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	28	2	2.28264	3.36196	4.44128	0.0534132	0.0151924	0.179876	0.0994339
chr18	23572770	23572860	6958823	0	-	0.477778	(0.476,0.515]	chr18	688383	2	INTRON	INTRON	NPC1	ENSG00000141458.13	ENST00000269228.10:ENST00000540608.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	28	2	2.28264	3.36196	4.44128	0.0534132	0.0151924	0.179876	0.0994339
chr19	47782658	47782754	7087300	0	+	0.5	(0.476,0.515]	chr19	709175	6	EXON_MRNA	EXON_MRNA:INTRON	SELENOW	ENSG00000178980.16	ENST00000593892.5:ENST00000599874.5:ENST00000601419.5:ENST00000601048.6:ENST00000598273.5:ENST00000598956.5:ENST00000601937.5:ENST00000599627.1:ENST00000602163.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	28	2	2.28264	3.36196	4.44128	0.0534132	0.0151924	0.179876	0.0994339
chr2	61407223	61407322	1129916	0	-	0.484848	(0.476,0.515]	chr2	121491	7	INTRON	INTRON	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000453133.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	28	2	2.28264	3.36196	4.44128	0.0534132	0.0151924	0.179876	0.0994339
chr20	47235726	47235825	7348287	0	-	0.50505	(0.476,0.515]	chr20	749259	56	INTRON	INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000467200.6:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	2.28264	3.36196	4.44128	0.0534132	0.0151924	0.179876	0.0994339
chr18	12854268	12854368	6950441	0	-	0.58	(0.57,1]	chr18	687597	104	INTRON	INTRON	PTPN2	ENSG00000175354.20	ENST00000327283.7:ENST00000591115.5:ENST00000353319.8:ENST00000309660.10:ENST00000646492.1:ENST00000645191.1:ENST00000645816.1:ENST00000591305.5:ENST00000592776.1:ENST00000589216.1:ENST00000592059.5:ENST00000589086.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	35	2	3.22856	3.361865	3.49517	0.00205928	6.03609e-4	0.0420839	0.0226059
chr10	45763689	45763789	4430065	0	+	0.44	(0.408,0.44]	chr10	408384	2	SS5_PROX	SS5_PROX:INTRON	WASHC2C	ENSG00000172661.20	ENST00000359860.7:ENST00000374362.6:ENST00000540872.6:ENST00000537517.6:ENST00000623400.4	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	2.49258	3.36177	4.23096	0.0314608	0.0278028	0.144381	0.123904
chr12	6580505	6580581	5259354	0	-	0.434211	(0.408,0.44]	chr12	500700	4	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	CHD4	ENSG00000111642.16	ENST00000645022.1:ENST00000544040.7:ENST00000544484.6:ENST00000357008.7:ENST00000647112.1:ENST00000642810.1:ENST00000642637.1:ENST00000643335.1:ENST00000643815.1:ENST00000647535.1:ENST00000646806.1:ENST00000644137.1:ENST00000642879.1:ENST00000646462.1:ENST00000644652.1:ENST00000645645.1:ENST00000642594.1:ENST00000646360.1:ENST00000646268.1:ENST00000645095.1:ENST00000644352.1:ENST00000647483.1:ENST00000646608.1:ENST00000644077.1:ENST00000643538.1:ENST00000645005.1:ENST00000645199.1:ENST00000646609.1:ENST00000644801.1:ENST00000644289.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	28	2	2.49258	3.36177	4.23096	0.0314608	0.0278028	0.144381	0.123904
chr12	54408655	54408755	5331412	0	-	0.43	(0.408,0.44]	chr12	508824	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ITGA5	ENSG00000161638.11	ENST00000293379.9:ENST00000435631.6:ENST00000553071.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	28	2	2.49258	3.36177	4.23096	0.0314608	0.0278028	0.144381	0.123904
chr12	112079711	112079805	5415130	0	-	0.43617	(0.408,0.44]	chr12	517223	6	INTRON	INTRON	NAA25	ENSG00000111300.10	ENST00000261745.9:ENST00000552527.5:ENST00000549711.5:ENST00000551858.1:ENST00000547133.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	28	2	2.49258	3.36177	4.23096	0.0314608	0.0278028	0.144381	0.123904
chr12	112472143	112472243	5230337	0	+	0.41	(0.408,0.44]	chr12	495872	148	INTRON	INTRON	PTPN11	ENSG00000179295.19	ENST00000688597.1:ENST00000692624.1:ENST00000685487.1:ENST00000690210.1:ENST00000639857.2:ENST00000392597.5:ENST00000687906.1:ENST00000351677.7:ENST00000635625.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	28	2	2.49258	3.36177	4.23096	0.0314608	0.0278028	0.144381	0.123904
chr13	50240026	50240125	5492566	0	+	0.414141	(0.408,0.44]	chr13	526057	153	INTRON	INTRON	DLEU1	ENSG00000176124.15	ENST00000467721.5:ENST00000468522.5:ENST00000490577.5:ENST00000491341.5:ENST00000491615.5:ENST00000463474.7:ENST00000468168.5:ENST00000476738.5:ENST00000461527.7:ENST00000486895.5:ENST00000485007.5:ENST00000475913.5:ENST00000484529.5:ENST00000473075.3:ENST00000483444.5	lncRNA	lncRNA	lncRNA	lncRNA	1	28	2	2.49258	3.36177	4.23096	0.0314608	0.0278028	0.144381	0.123904
chr17	51194713	51194813	6797199	0	-	0.44	(0.408,0.44]	chr17	671050	1	SS5_PROX	SS5_PROX:INTRON	MBTD1	ENSG00000011258.16	ENST00000586178.6:ENST00000415868.5:ENST00000405860.7:ENST00000591270.1:ENST00000376381.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	28	2	2.49258	3.36177	4.23096	0.0314608	0.0278028	0.144381	0.123904
chr17	60268752	60268850	6804633	0	-	0.295918	(0.28,0.32]	chr17	672324	23	INTRON	INTRON	USP32	ENSG00000170832.13	ENST00000300896.9:ENST00000590133.5:ENST00000589335.5:ENST00000393003.7	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	2.29724	3.36177	4.4263	0.0554156	0.0330296	0.18407	0.133816
chr19	19451813	19451913	7035809	0	+	0.43	(0.408,0.44]	chr19	701448	152	INTRON	INTRON	GATAD2A	ENSG00000167491.18	ENST00000494516.6:ENST00000360315.7:ENST00000609040.5:ENST00000417582.6:ENST00000683918.1:ENST00000432704.5:ENST00000404158.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	28	2	2.49258	3.36177	4.23096	0.0314608	0.0278028	0.144381	0.123904
chr4	123096893	123096992	2037382	0	+	0.30303	(0.28,0.32]	chr4	202380	58	INTRON	INTRON	SPATA5	ENSG00000145375.9	ENST00000675612.1:ENST00000274008.5:ENST00000422835.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	32	2	2.29724	3.36177	4.4263	0.0554156	0.0330296	0.18407	0.133816
chr5	53971415	53971515	2617518	0	-	0.32	(0.28,0.32]	chr5	248835	594	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	32	2	2.29724	3.36177	4.4263	0.0554156	0.0330296	0.18407	0.133816
chr5	131286227	131286327	2484858	0	+	0.43	(0.408,0.44]	chr5	237114	217	INTRON	INTRON	CDC42SE2	ENSG00000158985.14	ENST00000502840.5:ENST00000511432.5:ENST00000506419.5:ENST00000395246.5:ENST00000505065.2:ENST00000504701.5:ENST00000503291.5:ENST00000360515.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	28	2	2.49258	3.36177	4.23096	0.0314608	0.0278028	0.144381	0.123904
chr5	134803248	134803348	2490844	0	+	0.44	(0.408,0.44]	chr5	237970	67	INTRON	INTRON	DDX46	ENSG00000145833.16	ENST00000452510.7:ENST00000507392.5:ENST00000354283.8:ENST00000503946.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	28	2	2.49258	3.36177	4.23096	0.0314608	0.0278028	0.144381	0.123904
chr7	74712786	74712884	3335807	0	+	0.295918	(0.28,0.32]	chr7	310391	13	INTRON	INTRON	GTF2I	ENSG00000263001.8	ENST00000650807.1:ENST00000690345.1:ENST00000573035.6:ENST00000614986.4:ENST00000620879.4:ENST00000621734.4:ENST00000443166.5:ENST00000490431.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	32	2	2.29724	3.36177	4.4263	0.0554156	0.0330296	0.18407	0.133816
chr7	130135010	130135109	3414251	0	+	0.282828	(0.28,0.32]	chr7	319162	44	UTR3	UTR3:EXON_MRNA	KLHDC10	ENSG00000128607.14	ENST00000335420.10	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	2.29724	3.36177	4.4263	0.0554156	0.0330296	0.18407	0.133816
chr7	155772578	155772677	3453199	0	+	0.292929	(0.28,0.32]	chr7	322745	56	INTRON	INTRON	RBM33	ENSG00000184863.11	ENST00000401878.8:ENST00000341148.7:ENST00000392755.2	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	2.29724	3.36177	4.4263	0.0554156	0.0330296	0.18407	0.133816
chr9	136810810	136810909	4221771	0	+	0.434343	(0.408,0.44]	chr9	387668	21	INTRON	INTRON	RABL6	ENSG00000196642.19	ENST00000371671.9:ENST00000311502.12:ENST00000484471.6:ENST00000371663.10:ENST00000357466.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	28	2	2.49258	3.36177	4.23096	0.0314608	0.0278028	0.144381	0.123904
chr3	3142793	3142893	1349618	0	+	0.25	[0,0.28]	chr3	141874	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	TRNT1	ENSG00000072756.17	ENST00000651591.1:ENST00000251607.11:ENST00000651316.1:ENST00000280591.10:ENST00000650755.1:ENST00000650989.1:ENST00000651093.1:ENST00000651352.1:ENST00000434583.5:ENST00000650839.1:ENST00000650814.1:ENST00000652340.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	54	2	1.94204	3.3617299999999997	4.78142	0.0544139	0.00943974	0.164972	0.0861183
chr7	139077765	139077860	3656096	0	-	0.347368	(0.32,0.35]	chr7	339427	10	INTRON	INTRON	ZC3HAV1	ENSG00000105939.14	ENST00000242351.10:ENST00000464606.5:ENST00000680309.1:ENST00000471652.1:ENST00000460845.5	protein_coding	protein_coding	protein_coding	protein_coding	2	43	2	2.35591	3.3617299999999997	4.36755	0.0300552	0.0128129	0.129138	0.0990564
chr18	804524	804624	6940629	0	-	0.5	(0.476,0.515]	chr18	686527	65	INTRON	INTRON	YES1	ENSG00000176105.14	ENST00000584307.5:ENST00000314574.5:ENST00000577611.1:ENST00000581960.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	208	2	3.33067	3.361725	3.39278	1.44974e-5	5.08862e-6	0.00304732	0.00154058
chr8	52702712	52702812	3950991	0	-	0.26	[0,0.28]	chr8	362390	154	INTRON	INTRON	RB1CC1	ENSG00000023287.13	ENST00000025008.10:ENST00000435644.6:ENST00000521611.1:ENST00000518710.5:ENST00000517963.1:ENST00000518211.1:ENST00000518468.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	88	2	3.0836	3.361705	3.63981	0.00940284	8.51767e-4	0.0817766	0.0264928
chr20	437032	437129	7302966	0	-	0.515464	(0.515,0.57]	chr20	743433	17	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TBC1D20	ENSG00000125875.15	ENST00000680792.1:ENST00000354200.5:ENST00000461304.5:ENST00000681539.1:ENST00000679741.1:ENST00000680990.1:ENST00000681129.1:ENST00000681414.1:ENST00000681441.1:ENST00000680088.1:ENST00000680284.1:ENST00000681777.1:ENST00000681389.1:ENST00000679895.1:ENST00000680491.1:ENST00000679451.1:ENST00000679953.1:ENST00000461188.6:ENST00000680815.1:ENST00000680521.1:ENST00000681193.1:ENST00000681551.1:ENST00000679973.1:ENST00000680911.1:ENST00000679944.1:ENST00000681636.1:ENST00000680106.1:ENST00000494633.1:ENST00000680050.1:ENST00000681742.1:ENST00000680515.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	174	2	2.98534	3.3617	3.73806	2.13909e-5	2.15507e-6	0.00358385	0.0010225
chr7	152374864	152374964	3680682	0	-	0.3	(0.28,0.32]	chr7	341660	158	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000682301.1:ENST00000452749.2:ENST00000680867.1:ENST00000683800.1:ENST00000684278.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	142	2	2.99206	3.361645	3.73123	0.0017801	2.76848e-5	0.0379201	0.00415129
chr8	17967270	17967370	3708202	0	+	0.37	(0.35,0.378]	chr8	343933	1	SS5_PROX	SS5_PROX:INTRON	PCM1	ENSG00000078674.19	ENST00000325083.13:ENST00000519253.5:ENST00000524226.5	protein_coding	protein_coding	protein_coding	protein_coding	4	110	2	3.1438	3.3616200000000003	3.57944	0.0010429	9.93672e-5	0.0293983	0.00838841
chr1	109371487	109371587	520755	0	-	0.41	(0.408,0.44]	chr1	61195	15	INTRON	INTRON	SORT1	ENSG00000134243.12	ENST00000538502.5:ENST00000256637.8:ENST00000493736.5:ENST00000482236.5:ENST00000633956.1:ENST00000471996.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	58	2	1.58622	3.36162	5.13702	0.0291748	0.00202889	0.141552	0.04086
chr10	116899115	116899215	4699422	0	-	0.35	(0.32,0.35]	chr10	433605	122	INTRON	INTRON	SHTN1	ENSG00000187164.20	ENST00000355371.9:ENST00000615301.4:ENST00000260777.14:ENST00000497044.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	97	2	2.86836	3.361615	3.85487	0.00250845	2.10176e-4	0.0446195	0.0126699
chr7	10621850	10621950	3482998	0	-	0.33	(0.32,0.35]	chr7	325772	599	INTRON	INTRON	MGC4859	ENSG00000283117.1	ENST00000634803.1	lncRNA	lncRNA	lncRNA	lncRNA	3	97	2	2.86836	3.361615	3.85487	0.00250845	2.10176e-4	0.0446195	0.0126699
chr6	158561131	158561231	3021609	0	+	0.55	(0.515,0.57]	chr6	281792	5	INTRON	INTRON	TMEM181	ENSG00000146433.10	ENST00000367090.4:ENST00000684151.1	protein_coding	protein_coding	protein_coding	protein_coding	10	203	2	2.85801	3.3616099999999998	3.86521	1.29769e-5	8.83044e-7	0.00266543	5.75788e-4
chr16	74651619	74651719	6525649	0	-	0.36	(0.35,0.378]	chr16	631908	3	SS5_PROX	SS5_PROX:INTRON	RFWD3	ENSG00000168411.14	ENST00000361070.9:ENST00000571750.5:ENST00000572337.5	protein_coding	protein_coding	protein_coding	protein_coding	4	121	2	3.21938	3.3615950000000003	3.50381	4.98221e-4	6.889e-5	0.0206993	0.00688351
chr14	22833589	22833671	5656526	0	+	0.353659	(0.35,0.378]	chr14	539362	1	SS5_PROX	SS5_PROX:INTRON	MRPL52	ENSG00000172590.18	ENST00000355151.9:ENST00000397496.7:ENST00000556654.5:ENST00000555345.5:ENST00000432849.7:ENST00000553711.5:ENST00000556465.5:ENST00000397505.2:ENST00000557221.1:ENST00000311892.10:ENST00000556840.5:ENST00000555536.1:ENST00000553965.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	202	2	2.67113	3.36155	4.05197	1.24966e-4	6.33308e-6	0.00954818	0.00190287
chr7	128624926	128625019	3408306	0	+	0.258065	[0,0.28]	chr7	318406	8	INTRON	INTRON	ENSG00000242588	ENSG00000242588.6	ENST00000605862.5	lncRNA	lncRNA	lncRNA	lncRNA	2	47	2	1.8986	3.361465	4.82433	0.0531512	0.0200334	0.179787	0.109608
chr1	35002967	35003067	420111	0	-	0.44	(0.408,0.44]	chr1	50557	102	INTRON	INTRON	ENSG00000271741:ZMYM6	ENSG00000271741.1:ENSG00000163867.17	ENST00000487874.1:ENST00000357182.9:ENST00000493328.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	28	2	2.2957	3.361415	4.42713	0.0516458	0.0173083	0.176696	0.104099
chr10	68732875	68732975	4442382	0	+	0.41	(0.408,0.44]	chr10	409595	99	INTRON	INTRON	CCAR1	ENSG00000060339.14	ENST00000536391.5:ENST00000630771.2:ENST00000538031.5:ENST00000543719.5:ENST00000541012.5:ENST00000265872.11:ENST00000539539.5:ENST00000543229.5:ENST00000536012.5:ENST00000543225.5:ENST00000494903.2:ENST00000540210.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	28	2	2.2957	3.361415	4.42713	0.0516458	0.0173083	0.176696	0.104099
chr12	11109724	11109824	5268892	0	-	0.43	(0.408,0.44]	chr12	502251	476	INTRON	INTRON	ENSG00000275778:PRH1	ENSG00000275778.2:ENSG00000231887.8	ENST00000536668.2:ENST00000535024.6:ENST00000541977.5:ENST00000546265.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	28	2	2.2957	3.361415	4.42713	0.0516458	0.0173083	0.176696	0.104099
chr13	72763250	72763350	5616242	0	-	0.42	(0.408,0.44]	chr13	535675	4	SS5_PROX	SS5_PROX:INTRON	DIS3	ENSG00000083520.15	ENST00000377767.9:ENST00000377780.8:ENST00000545453.5:ENST00000490646.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	28	2	2.2957	3.361415	4.42713	0.0516458	0.0173083	0.176696	0.104099
chr16	2245798	2245891	6431468	0	-	0.419355	(0.408,0.44]	chr16	618761	9	INTRON	INTRON	ECI1	ENSG00000167969.13	ENST00000301729.9:ENST00000562238.5:ENST00000570258.5:ENST00000566379.1:ENST00000563029.5:ENST00000561688.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	28	2	2.2957	3.361415	4.42713	0.0516458	0.0173083	0.176696	0.104099
chr17	1780052	1780147	6701715	0	-	0.421053	(0.408,0.44]	chr17	656144	7	UTR3	UTR3:EXON_MRNA	SMYD4	ENSG00000186532.12	ENST00000305513.12	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	2.2957	3.361415	4.42713	0.0516458	0.0173083	0.176696	0.104099
chr2	226968965	226969064	1025005	0	+	0.434343	(0.408,0.44]	chr2	109477	332	INTRON	INTRON	RHBDD1	ENSG00000144468.17	ENST00000341329.7:ENST00000392062.7:ENST00000409053.1:ENST00000491490.5:ENST00000493526.1:ENST00000483268.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	28	2	2.2957	3.361415	4.42713	0.0516458	0.0173083	0.176696	0.104099
chr6	35658338	35658438	3087214	0	-	0.43	(0.408,0.44]	chr6	288789	151	INTRON	INTRON	FKBP5	ENSG00000096060.15	ENST00000536438.5:ENST00000539068.5:ENST00000357266.9:ENST00000542713.1	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	2.2957	3.361415	4.42713	0.0516458	0.0173083	0.176696	0.104099
chr6	170340590	170340690	3036702	0	+	0.41	(0.408,0.44]	chr6	283066	94	INTRON	INTRON	FAM120B	ENSG00000112584.14	ENST00000630384.2:ENST00000537664.5:ENST00000476287.4:ENST00000625626.1	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	2.2957	3.361415	4.42713	0.0516458	0.0173083	0.176696	0.104099
chr11	62643764	62643864	4960345	0	-	0.46	(0.44,0.476]	chr11	466618	33	INTRON	INTRON	GANAB	ENSG00000089597.18	ENST00000346178.8:ENST00000532402.5:ENST00000356638.8:ENST00000540933.5:ENST00000648273.1:ENST00000534779.5:ENST00000534613.5:ENST00000525994.1:ENST00000526210.1:ENST00000526392.1:ENST00000529737.5:ENST00000534419.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	152	2	3.18051	3.3611199999999997	3.54173	7.87235e-5	2.04793e-5	0.00795151	0.00351769
chr18	12970652	12970752	6876387	0	+	0.48	(0.476,0.515]	chr18	681296	1	SS3_PROX	SS3_PROX:INTRON	SEH1L	ENSG00000085415.16	ENST00000262124.15:ENST00000399892.7:ENST00000585730.5:ENST00000589446.5:ENST00000587761.1:ENST00000588251.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	40	2	1.79693	3.36111	4.92529	0.0649782	0.00180221	0.179417	0.0392772
chr18	682893	682968	6939464	0	-	0.253333	[0,0.28]	chr18	686389	3	SS5_PROX	SS5_PROX:INTRON	ENOSF1	ENSG00000132199.20	ENST00000647584.2:ENST00000383578.7:ENST00000584259.6:ENST00000340116.12:ENST00000581475.5:ENST00000582745.5:ENST00000580982.5:ENST00000585128.6:ENST00000583973.5:ENST00000581928.5:ENST00000584453.5:ENST00000584706.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	42	2	2.64309	3.36105	4.07901	0.0494049	0.0308646	0.174117	0.13151
chr9	137104820	137104918	4222836	0	+	0.571429	(0.57,1]	chr9	387932	33	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	MAN1B1	ENSG00000177239.16	ENST00000682881.1:ENST00000683324.1:ENST00000684138.1:ENST00000683135.1:ENST00000542372.2:ENST00000371587.9:ENST00000684366.1:ENST00000684229.1:ENST00000683355.1:ENST00000682117.1:ENST00000683475.1:ENST00000682425.1:ENST00000684645.1:ENST00000683979.1:ENST00000371589.9:ENST00000535144.6:ENST00000684272.1:ENST00000475449.7:ENST00000684759.1:ENST00000545539.6:ENST00000684144.1:ENST00000683987.1:ENST00000682212.1:ENST00000544448.6:ENST00000684297.1:ENST00000474902.5:ENST00000682964.1:ENST00000535028.6:ENST00000536349.6:ENST00000684336.1:ENST00000540391.5:ENST00000480100.3:ENST00000682502.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	71	2	2.85802	3.360945	3.86387	3.01883e-4	2.27963e-6	0.0160895	9.46989e-4
chr12	31976905	31977004	5106779	0	+	0.282828	(0.28,0.32]	chr12	482333	62	INTRON	INTRON	RESF1	ENSG00000174718.12	ENST00000541981.5:ENST00000540924.5:ENST00000312561.9:ENST00000535596.5:ENST00000397578.7:ENST00000381054.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	104	2	3.0891	3.36093	3.63276	0.00114475	7.51507e-4	0.0308149	0.0251578
chr8	105345303	105345403	3837508	0	+	0.39	(0.378,0.408]	chr8	354033	252	INTRON	INTRON	ZFPM2	ENSG00000169946.14	ENST00000518180.1:ENST00000407775.7:ENST00000520492.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	104	2	2.63629	3.360785	4.08528	0.001315	9.30621e-5	0.0333932	0.00857086
chr10	74345440	74345540	4457715	0	+	0.45	(0.44,0.476]	chr10	411566	58	INTRON	INTRON	ADK	ENSG00000156110.15	ENST00000672429.1:ENST00000539909.6:ENST00000286621.7:ENST00000673352.1:ENST00000673310.1:ENST00000672920.1:ENST00000672394.1:ENST00000372734.5:ENST00000673027.1:ENST00000541550.6:ENST00000672604.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	45	2	1.69402	3.360525	5.02703	0.0456129	0.00278015	0.164236	0.0469265
chr22	23243584	23243683	7483838	0	+	0.333333	(0.32,0.35]	chr22	763547	2	INTRON	INTRON	BCR	ENSG00000186716.21	ENST00000479188.5:ENST00000359540.7:ENST00000305877.13:ENST00000463770.5:ENST00000487679.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	76	2	3.0247	3.3602600000000002	3.69582	0.00671684	7.3931e-4	0.0738715	0.0249744
chr10	68524861	68524960	4640258	0	-	0.444444	(0.44,0.476]	chr10	426805	68	INTRON	INTRON	SLC25A16	ENSG00000122912.15	ENST00000609923.6:ENST00000493963.5:ENST00000491102.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	245	2	2.96459	3.3601599999999996	3.75573	1.93369e-5	1.63478e-6	0.00356815	7.74132e-4
chr2	241685208	241685301	1349424	0	-	0.537634	(0.515,0.57]	chr2	141817	2	EXON_MRNA	EXON_MRNA:SS3_PROX:SS5_PROX:INTRON	DTYMK	ENSG00000168393.13	ENST00000400770.6:ENST00000305784.7:ENST00000445261.5:ENST00000432348.5:ENST00000420144.1:ENST00000493095.1:ENST00000464603.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	36	2	1.8707	3.36003	4.84936	0.0523213	0.00146032	0.160182	0.0349875
chr21	32318017	32318117	7438022	0	-	0.54	(0.515,0.57]	chr21	758738	1	SS3_PROX	SS3_PROX:INTRON	URB1	ENSG00000142207.7	ENST00000382751.4	protein_coding	protein_coding	protein_coding	protein_coding	2	36	2	1.8707	3.36003	4.84936	0.0523213	0.00146032	0.160182	0.0349875
chr1	32196191	32196291	64333	0	+	0.56	(0.515,0.57]	chr1	8208	11	UTR3	UTR3:EXON_MRNA	TXLNA	ENSG00000084652.16	ENST00000373610.8:ENST00000373609.1	protein_coding	protein_coding	protein_coding	protein_coding	3	41	2	1.67758	3.359915	5.04225	0.0471728	0.00131841	0.168737	0.0331539
chr17	42838305	42838400	6612927	0	+	0.515789	(0.515,0.57]	chr17	644626	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PSME3	ENSG00000131467.12	ENST00000545225.5:ENST00000541124.5:ENST00000590720.6:ENST00000586114.5:ENST00000585805.5:ENST00000441946.6:ENST00000591152.5:ENST00000589469.5:ENST00000543428.5:ENST00000293362.7:ENST00000592169.2:ENST00000586312.5:ENST00000593111.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	41	2	1.67758	3.359915	5.04225	0.0471728	0.00131841	0.168737	0.0331539
chr8	129960553	129960653	4063371	0	-	0.55	(0.515,0.57]	chr8	369838	111	INTRON	INTRON	CYRIB	ENSG00000153310.21	ENST00000694912.1:ENST00000523288.5:ENST00000519110.5:ENST00000401979.6:ENST00000523509.5:ENST00000517654.5:ENST00000519142.5:ENST00000518879.5:ENST00000522702.5:ENST00000521223.5:ENST00000518283.5:ENST00000523993.5:ENST00000519020.5:ENST00000518167.5:ENST00000517672.5:ENST00000522361.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	41	2	1.67758	3.359915	5.04225	0.0471728	0.00131841	0.168737	0.0331539
chr16	89543569	89543667	6420715	0	+	0.489796	(0.476,0.515]	chr16	616270	7	EXON_MRNA	EXON_MRNA:INTRON	SPG7	ENSG00000197912.16	ENST00000647079.1:ENST00000646303.1:ENST00000643649.1:ENST00000644498.1:ENST00000645897.1:ENST00000643668.1:ENST00000644225.1:ENST00000645818.2:ENST00000645977.1:ENST00000645063.1:ENST00000646263.1:ENST00000643724.1:ENST00000644781.1:ENST00000644901.1:ENST00000645042.1:ENST00000646531.1:ENST00000646930.1:ENST00000644210.1:ENST00000646589.1:ENST00000268704.7:ENST00000646826.1:ENST00000646716.1:ENST00000643345.1:ENST00000646958.1:ENST00000643105.1:ENST00000645354.1:ENST00000642334.1:ENST00000647227.1:ENST00000646445.1:ENST00000643954.1:ENST00000646399.1:ENST00000644671.1:ENST00000644748.1:ENST00000643496.1:ENST00000647032.1:ENST00000644751.1:ENST00000642427.1:ENST00000643370.1:ENST00000645886.1:ENST00000646454.1:ENST00000561945.2:ENST00000644171.1:ENST00000566682.2:ENST00000645258.1:ENST00000644044.1:ENST00000642263.1:ENST00000644556.1:ENST00000645842.1:ENST00000643734.1:ENST00000642814.1:ENST00000644061.1:ENST00000643350.1:ENST00000645392.1:ENST00000647302.1:ENST00000644930.1:ENST00000647123.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	84	2	2.76855	3.35989	3.95123	0.00244302	1.50038e-4	0.0456956	0.011202
chr21	43907008	43907108	7414210	0	+	0.43	(0.408,0.44]	chr21	755698	26	INTRON	INTRON	AGPAT3	ENSG00000160216.21	ENST00000291572.13:ENST00000448287.5:ENST00000398061.5:ENST00000327505.6	protein_coding	protein_coding	protein_coding	protein_coding	5	63	2	1.31757	3.359825	5.40208	0.0705974	2.37882e-4	0.184528	0.0136195
chrX	45062273	45062366	7650512	0	+	0.354839	(0.35,0.378]	chrX	782803	9	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000675440.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000621147.5:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1:ENST00000675525.1:ENST00000414389.5:ENST00000675546.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	55	2	1.7339	3.3597550000000003	4.98561	0.0260366	0.00474226	0.133676	0.0600445
chrX	111702838	111702938	7702235	0	+	0.29	(0.28,0.32]	chrX	788221	128	INTRON	INTRON	ALG13	ENSG00000101901.12	ENST00000487141.5:ENST00000394780.8:ENST00000251943.8:ENST00000610588.4:ENST00000621367.4:ENST00000622997.3:ENST00000624161.3:ENST00000636363.1:ENST00000624881.3:ENST00000495283.5:ENST00000486353.5:ENST00000623144.3:ENST00000470971.5:ENST00000623148.3:ENST00000471924.5:ENST00000436609.5:ENST00000470704.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	105	2	2.68602	3.3597	4.03338	0.0055712	1.04313e-4	0.0649112	0.00863456
chr16	2920645	2920745	6280511	0	+	0.52	(0.515,0.57]	chr16	600930	48	INTRON	INTRON	FLYWCH1	ENSG00000059122.17	ENST00000253928.14:ENST00000571140.5:ENST00000416288.6:ENST00000570425.5:ENST00000573525.1:ENST00000570759.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	83	2	2.83501	3.3596500000000002	3.88429	0.0117686	3.95865e-6	0.0894475	0.00131614
chr10	5921669	5921769	4385515	0	+	0.5	(0.476,0.515]	chr10	404710	1	SS5_PROX	SS5_PROX:INTRON	FBH1	ENSG00000134452.20	ENST00000397269.7:ENST00000362091.9:ENST00000379999.6:ENST00000475867.5:ENST00000461504.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	40	2	1.72558	3.3595	4.99342	0.0767648	0.00139274	0.196164	0.0341261
chr3	168092648	168092748	1854907	0	-	0.42	(0.408,0.44]	chr3	186419	439	INTRON	INTRON	GOLIM4	ENSG00000173905.9	ENST00000470487.6:ENST00000309027.4	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	2.18807	3.3594749999999998	4.53088	0.0708044	0.00669275	0.184528	0.0738715
chr7	27741464	27741563	3293359	0	+	0.414141	(0.408,0.44]	chr7	305945	8	INTRON	INTRON	TAX1BP1	ENSG00000106052.14	ENST00000418691.5:ENST00000543117.5:ENST00000422800.5:ENST00000433216.6:ENST00000265393.10:ENST00000409980.5:ENST00000416801.6:ENST00000396319.7:ENST00000490455.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	30	2	2.18807	3.3594749999999998	4.53088	0.0708044	0.00669275	0.184528	0.0738715
chr2	25797403	25797502	1084723	0	-	0.373737	(0.35,0.378]	chr2	115929	29	INTRON	INTRON	ASXL2	ENSG00000143970.18	ENST00000435504.9:ENST00000336112.9:ENST00000497092.1	protein_coding	protein_coding	protein_coding	protein_coding	2	43	2	1.75561	3.359455	4.9633	0.0739399	0.00198929	0.190914	0.0411469
chr1	6862472	6862572	6416	0	+	0.29	(0.28,0.32]	chr1	1147	89	INTRON	INTRON	CAMTA1	ENSG00000171735.19	ENST00000303635.12:ENST00000490738.5:ENST00000476163.5:ENST00000473578.5:ENST00000557126.5:ENST00000467404.6:ENST00000461311.1:ENST00000486138.1:ENST00000482934.1:ENST00000470648.5:ENST00000461580.5:ENST00000472283.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	32	2	2.38101	3.35933	4.33765	0.0456017	0.039714	0.164236	0.143072
chr1	184858887	184858986	601891	0	-	0.313131	(0.28,0.32]	chr1	71742	266	INTRON	INTRON	NIBAN1	ENSG00000135842.17	ENST00000367511.4:ENST00000487074.5:ENST00000461167.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	32	2	2.38101	3.35933	4.33765	0.0456017	0.039714	0.164236	0.143072
chr10	60138721	60138791	4625048	0	-	0.314286	(0.28,0.32]	chr10	425839	1	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ANK3	ENSG00000151150.22	ENST00000280772.7:ENST00000373827.6:ENST00000355288.6:ENST00000503366.5:ENST00000622427.4:ENST00000373815.5:ENST00000618080.4:ENST00000513049.5:ENST00000506635.5:ENST00000474360.1:ENST00000460468.5:ENST00000486349.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	32	2	2.38101	3.35933	4.33765	0.0456017	0.039714	0.164236	0.143072
chr15	41699758	41699858	6007255	0	+	0.32	(0.28,0.32]	chr15	571658	2	INTRON	INTRON	MGA	ENSG00000174197.18	ENST00000566718.6:ENST00000545763.6:ENST00000570161.6:ENST00000566586.6:ENST00000219905.13	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	32	2	2.38101	3.35933	4.33765	0.0456017	0.039714	0.164236	0.143072
chr15	63759459	63759558	6200155	0	-	0.282828	(0.28,0.32]	chr15	591421	7	INTRON	INTRON	HERC1	ENSG00000103657.14	ENST00000443617.7:ENST00000561400.1:ENST00000559886.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	32	2	2.38101	3.35933	4.33765	0.0456017	0.039714	0.164236	0.143072
chr17	59144370	59144470	6802291	0	-	0.32	(0.28,0.32]	chr17	671859	61	INTRON	INTRON	SKA2	ENSG00000182628.13	ENST00000330137.12:ENST00000580541.1:ENST00000578105.1:ENST00000578519.5:ENST00000583927.1:ENST00000581068.5:ENST00000437036.6:ENST00000583380.5:ENST00000583976.1:ENST00000584089.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	32	2	2.38101	3.35933	4.33765	0.0456017	0.039714	0.164236	0.143072
chr19	4975321	4975420	7003478	0	+	0.292929	(0.28,0.32]	chr19	694800	57	INTRON	INTRON	KDM4B	ENSG00000127663.15	ENST00000159111.9:ENST00000611640.4:ENST00000588337.5:ENST00000381759.8	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	2.38101	3.35933	4.33765	0.0456017	0.039714	0.164236	0.143072
chr2	24592547	24592647	710273	0	+	0.3	(0.28,0.32]	chr2	82224	76	INTRON	INTRON	NCOA1	ENSG00000084676.16	ENST00000348332.8:ENST00000496333.5:ENST00000406961.5:ENST00000405141.5:ENST00000407230.5:ENST00000483904.5:ENST00000288599.9:ENST00000395856.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	32	2	2.38101	3.35933	4.33765	0.0456017	0.039714	0.164236	0.143072
chr4	15605999	15606099	2114359	0	-	0.32	(0.28,0.32]	chr4	208816	2	SS3_PROX	SS3_PROX:INTRON	FBXL5	ENSG00000118564.15	ENST00000341285.8:ENST00000412094.6:ENST00000511441.5:ENST00000513163.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	32	2	2.38101	3.35933	4.33765	0.0456017	0.039714	0.164236	0.143072
chr5	95552906	95553006	2680991	0	-	0.29	(0.28,0.32]	chr5	253456	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	TTC37	ENSG00000198677.12	ENST00000649566.1:ENST00000358746.7:ENST00000514952.5:ENST00000513823.5	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	2.38101	3.35933	4.33765	0.0456017	0.039714	0.164236	0.143072
chr5	176244645	176244745	2551115	0	+	0.31	(0.28,0.32]	chr5	243572	52	INTRON	INTRON	SIMC1	ENSG00000170085.18	ENST00000443967.5:ENST00000430704.6:ENST00000341199.10:ENST00000495423.1:ENST00000429602.7:ENST00000508769.1:ENST00000467472.1:ENST00000514128.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	32	2	2.38101	3.35933	4.33765	0.0456017	0.039714	0.164236	0.143072
chrX	121272201	121272301	7715912	0	+	0.3	(0.28,0.32]	chrX	789390	860	INTRON	INTRON	ENSG00000286163	ENSG00000286163.1	ENST00000651788.1	lncRNA	lncRNA	lncRNA	lncRNA	1	32	2	2.38101	3.35933	4.33765	0.0456017	0.039714	0.164236	0.143072
chrX	53415469	53415569	7820128	0	-	0.46	(0.44,0.476]	chrX	797769	3	SS3_PROX	SS3_PROX:INTRON	SMC1A	ENSG00000072501.19	ENST00000375340.10:ENST00000322213.9:ENST00000675504.1:ENST00000674590.1:ENST00000675065.1:ENST00000463684.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	44	2	2.38519	3.359325	4.33346	0.012193	0.0120349	0.0962115	0.0910127
chr17	27298796	27298894	6580579	0	+	0.418367	(0.408,0.44]	chr17	639604	11	INTRON	INTRON	WSB1	ENSG00000109046.15	ENST00000581440.5:ENST00000578312.5:ENST00000583742.1:ENST00000467843.6:ENST00000579733.5:ENST00000583193.5:ENST00000262394.7:ENST00000427287.6:ENST00000581185.5:ENST00000584354.1:ENST00000583786.5:ENST00000581089.1:ENST00000348811.6:ENST00000582208.1:ENST00000584114.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	86	2	2.45003	3.359095	4.26816	0.00990006	1.58618e-5	0.0838372	0.00300937
chr10	74184279	74184378	4456099	0	+	0.40404	(0.378,0.408]	chr10	411534	70	INTRON	INTRON	ADK	ENSG00000156110.15	ENST00000672429.1:ENST00000539909.6:ENST00000286621.7:ENST00000478611.2:ENST00000673352.1:ENST00000673310.1:ENST00000672920.1:ENST00000672394.1:ENST00000372734.5:ENST00000673027.1:ENST00000541550.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	42	2	1.94681	3.35893	4.77105	0.0457723	0.00330823	0.149888	0.0527031
chr2	171925036	171925133	918384	0	+	0.381443	(0.378,0.408]	chr2	101177	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HAT1	ENSG00000128708.13	ENST00000412731.5:ENST00000264108.5:ENST00000457761.6:ENST00000494601.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	42	2	1.94681	3.35893	4.77105	0.0457723	0.00330823	0.149888	0.0527031
chr9	137651137	137651237	4223797	0	+	0.4	(0.378,0.408]	chr9	388169	1	SS5_PROX	SS5_PROX:INTRON	EHMT1	ENSG00000181090.21	ENST00000462484.5:ENST00000371394.6:ENST00000630754.2:ENST00000460843.6:ENST00000626216.2:ENST00000629335.2:ENST00000637335.1:ENST00000636376.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	42	2	1.94681	3.35893	4.77105	0.0457723	0.00330823	0.149888	0.0527031
chr1	100122202	100122279	515756	0	-	0.350649	(0.35,0.378]	chr1	60485	3	SS5_PROX	SS5_PROX:INTRON	SASS6	ENSG00000156876.10	ENST00000462159.1:ENST00000287482.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	48	2	1.92704	3.358915	4.79079	0.0228255	0.00846427	0.125469	0.0776969
chr12	56672141	56672239	5335915	0	-	0.367347	(0.35,0.378]	chr12	510180	3	SS3_PROX	SS3_PROX:INTRON	PTGES3	ENSG00000110958.16	ENST00000537473.2:ENST00000614328.4:ENST00000262033.11:ENST00000414274.7:ENST00000436399.6:ENST00000448157.6:ENST00000456859.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	48	2	1.92704	3.358915	4.79079	0.0228255	0.00846427	0.125469	0.0776969
chr7	2364629	2364729	3269727	0	+	0.36	(0.35,0.378]	chr7	303824	1	SS5_PROX	SS5_PROX:INTRON	EIF3B	ENSG00000106263.19	ENST00000431643.5:ENST00000360876.9:ENST00000397011.2:ENST00000463229.2:ENST00000468250.2:ENST00000463026.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	48	2	1.92704	3.358915	4.79079	0.0228255	0.00846427	0.125469	0.0776969
chr16	103584	103683	6425407	0	-	0.565657	(0.515,0.57]	chr16	617341	27	INTRON	INTRON	NPRL3	ENSG00000103148.17	ENST00000611875.5:ENST00000622194.4:ENST00000621703.4:ENST00000399953.7:ENST00000473674.5:ENST00000457916.5:ENST00000483663.5:ENST00000422814.5:ENST00000468260.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	54	2	3.31388	3.35888	3.40388	0.00174704	0.00142538	0.0386026	0.0340865
chr16	50160255	50160355	6347617	0	+	0.33	(0.32,0.35]	chr16	609312	56	INTRON	INTRON	TENT4B	ENSG00000121274.14	ENST00000436909.8:ENST00000561678.7:ENST00000562717.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	41	2	1.95271	3.35886	4.76501	0.0431213	0.0114287	0.162255	0.0886611
chr18	57549424	57549523	6980086	0	-	0.343434	(0.32,0.35]	chr18	690573	52	UTR3	UTR3:EXON_MRNA	FECH	ENSG00000066926.13	ENST00000262093.11:ENST00000652755.1	protein_coding	protein_coding	protein_coding	protein_coding	2	41	2	1.95271	3.35886	4.76501	0.0431213	0.0114287	0.162255	0.0886611
chr11	481287	481386	4719217	0	+	0.414141	(0.408,0.44]	chr11	436026	8	INTRON	INTRON	PTDSS2	ENSG00000174915.12	ENST00000532614.5:ENST00000308020.6:ENST00000531520.5:ENST00000526878.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	112	2	3.34513	3.358785	3.37244	2.26766e-4	1.2469e-4	0.0138494	0.00953295
chr2	112653155	112653255	852138	0	+	0.35	(0.32,0.35]	chr2	95583	3	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	SLC20A1	ENSG00000144136.11	ENST00000272542.8:ENST00000423633.5:ENST00000498224.5:ENST00000433924.5:ENST00000456264.5:ENST00000413135.1:ENST00000480984.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	41	2	1.88468	3.3587749999999996	4.83287	0.0515071	0.0095071	0.176696	0.0817766
chr19	28531602	28531702	7166411	0	-	0.47	(0.44,0.476]	chr19	724189	634	INTRON	INTRON	ENSG00000283403:ENSG00000267243	ENSG00000283403.1:ENSG00000267243.6	ENST00000592347.5:ENST00000593065.5	lncRNA	lncRNA	lncRNA	lncRNA	4	99	2	2.93704	3.35875	3.78046	3.54249e-4	2.76819e-4	0.0174886	0.0148174
chr1	16341377	16341477	382509	0	-	0.48	(0.476,0.515]	chr1	44888	256	INTRON	INTRON	FBXO42	ENSG00000037637.11	ENST00000375592.8	protein_coding	protein_coding	protein_coding	protein_coding	6	125	2	2.53458	3.35862	4.18266	4.37058e-4	4.55166e-5	0.0188334	0.00583644
chr6	43530187	43530287	3096852	0	-	0.45	(0.44,0.476]	chr6	289999	1	SS5_PROX	SS5_PROX:INTRON	XPO5	ENSG00000124571.18	ENST00000265351.12:ENST00000398835.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	50	2	1.85904	3.3586050000000003	4.85817	0.029889	0.00223254	0.129138	0.0435144
chr22	20603743	20603827	7557548	0	-	0.488095	(0.476,0.515]	chr22	772837	2	SS5_PROX	SS5_PROX:INTRON	SMPD4P1	ENSG00000223553.6	ENST00000416717.6	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	2	62	2	3.05152	3.3585849999999997	3.66565	0.0064848	4.18031e-4	0.0699952	0.0182827
chr5	62607726	62607826	2364999	0	+	0.34	(0.32,0.35]	chr5	228042	55	INTRON	INTRON	IPO11	ENSG00000086200.17	ENST00000325324.11:ENST00000409296.7:ENST00000511713.5:ENST00000409534.1:ENST00000512177.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	34	2	2.4458	3.3584650000000003	4.27113	0.0425977	0.0199982	0.148082	0.120668
chr6	15295032	15295132	2823436	0	+	0.33	(0.32,0.35]	chr6	265190	457	INTRON	INTRON	JARID2	ENSG00000008083.14	ENST00000341776.7:ENST00000397311.4	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	2.4458	3.3584650000000003	4.27113	0.0425977	0.0199982	0.148082	0.120668
chr9	63977494	63977593	4262591	0	-	0.323232	(0.32,0.35]	chr9	392248	23	INTRON	INTRON	ENSG00000204790	ENSG00000204790.9	ENST00000485382.3	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	1	34	2	2.4458	3.3584650000000003	4.27113	0.0425977	0.0199982	0.148082	0.120668
chr1	50680606	50680706	449451	0	-	0.46	(0.44,0.476]	chr1	54229	247	INTRON	INTRON	FAF1	ENSG00000185104.21	ENST00000396153.7:ENST00000494400.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	32	2	2.74063	3.3584449999999997	3.97626	0.0300538	0.0176095	0.142135	0.105143
chr9	36600380	36600479	4116751	0	+	0.525253	(0.515,0.57]	chr9	375275	5	INTRON	INTRON	MELK	ENSG00000165304.8	ENST00000543751.5:ENST00000536860.5:ENST00000541717.4:ENST00000536329.5:ENST00000627766.2:ENST00000298048.7:ENST00000536987.5:ENST00000545008.5:ENST00000495529.5:ENST00000489766.5:ENST00000625974.2:ENST00000487398.3:ENST00000626154.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	34	2	2.03361	3.3583549999999995	4.6831	0.0325854	0.00471288	0.145164	0.0600108
chr10	5781841	5781941	4544599	0	-	0.53	(0.515,0.57]	chr10	419772	75	INTRON	INTRON	GDI2	ENSG00000057608.17	ENST00000380191.9:ENST00000447751.5:ENST00000380181.7:ENST00000456041.5	protein_coding	protein_coding	protein_coding	protein_coding	4	87	2	2.79153	3.358265	3.925	6.28135e-4	8.71525e-5	0.023031	0.00783545
chr9	4794624	4794724	4094882	0	+	0.3	(0.28,0.32]	chr9	373155	10	INTRON	INTRON	RCL1	ENSG00000120158.12	ENST00000381750.9:ENST00000381732.3:ENST00000442869.5:ENST00000473230.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	45	2	2.28998	3.35814	4.4263	0.0330296	0.0166401	0.133816	0.110511
chr12	122507467	122507562	5442042	0	-	0.263158	[0,0.28]	chr12	520537	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RSRC2	ENSG00000111011.18	ENST00000331738.12:ENST00000532695.5:ENST00000433877.6:ENST00000527173.6:ENST00000392442.6:ENST00000525332.2:ENST00000531389.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	66	2	1.60593	3.35813	5.11033	0.0433625	0.00991388	0.162255	0.0838372
chr1	21748571	21748671	396513	0	-	0.39	(0.378,0.408]	chr1	47315	3	SS3_PROX	SS3_PROX:INTRON	USP48	ENSG00000090686.16	ENST00000400301.5:ENST00000308271.14:ENST00000529637.5:ENST00000421625.6	protein_coding	protein_coding	protein_coding	protein_coding	2	66	2	2.84663	3.35807	3.86951	0.0133954	1.55755e-4	0.0946278	0.0106835
chr21	37075160	37075259	7404839	0	+	0.262626	[0,0.28]	chr21	754521	13	INTRON	INTRON	TTC3	ENSG00000182670.14	ENST00000492275.6:ENST00000418766.6:ENST00000485402.5:ENST00000450533.6:ENST00000438055.5:ENST00000696812.1:ENST00000696811.1:ENST00000463216.6:ENST00000481605.6:ENST00000540756.5:ENST00000494243.5:ENST00000399010.5:ENST00000411496.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	144	2	3.06849	3.35807	3.64765	0.00144832	2.76554e-4	0.034341000000000003	0.0148174
chr5	57186692	57186792	2358182	0	+	0.44	(0.408,0.44]	chr5	227562	99	INTRON	INTRON	GPBP1	ENSG00000062194.16	ENST00000424459.7:ENST00000514387.6:ENST00000506184.7:ENST00000511209.5	protein_coding	protein_coding	protein_coding	protein_coding	3	45	2	1.69566	3.35797	5.02028	0.0453922	0.00303216	0.164236	0.0493883
chr5	32148774	32148874	2597260	0	-	0.42	(0.408,0.44]	chr5	246744	45	INTRON	INTRON	GOLPH3	ENSG00000113384.14	ENST00000265070.7:ENST00000503610.5:ENST00000512668.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	185	2	2.90326	3.3578799999999998	3.8125	2.41732e-5	1.82667e-5	0.00385018	0.00348613
chr3	172212380	172212479	1561281	0	+	0.484848	(0.476,0.515]	chr3	161562	252	INTRON	INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000469491.5:ENST00000336824.8:ENST00000416957.5:ENST00000478016.1:ENST00000443501.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	45	2	1.74317	3.35785	4.97253	0.0396373	0.00311573	0.161534	0.0498063
chr1	16368015	16368115	35768	0	+	0.45	(0.44,0.476]	chr1	4351	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	SZRD1	ENSG00000055070.17	ENST00000475078.1:ENST00000471507.5:ENST00000401089.3:ENST00000486763.5:ENST00000401088.9:ENST00000475554.5:ENST00000476423.5:ENST00000472351.5:ENST00000492354.1:ENST00000472461.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	30	2	2.38219	3.357825	4.33346	0.045456	0.0120349	0.149888	0.0962115
chr3	158375293	158375393	1540941	0	+	0.45	(0.44,0.476]	chr3	160318	200	INTRON	INTRON	RSRC1	ENSG00000174891.14	ENST00000480820.5:ENST00000295930.7:ENST00000471994.5:ENST00000683733.1:ENST00000682221.1:ENST00000683831.1:ENST00000683516.1:ENST00000482822.3:ENST00000476899.6:ENST00000464171.5:ENST00000611884.5:ENST00000682164.1:ENST00000684604.1:ENST00000683899.1:ENST00000682500.1:ENST00000684683.1:ENST00000312179.10:ENST00000475278.6:ENST00000480119.5:ENST00000471911.5:ENST00000683137.1:ENST00000684353.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	30	2	2.38219	3.357825	4.33346	0.045456	0.0120349	0.149888	0.0962115
chr7	10635744	10635844	3483137	0	-	0.45	(0.44,0.476]	chr7	325772	738	INTRON	INTRON	MGC4859	ENSG00000283117.1	ENST00000634803.1	lncRNA	lncRNA	lncRNA	lncRNA	1	30	2	2.38219	3.357825	4.33346	0.045456	0.0120349	0.149888	0.0962115
chr8	67074923	67075023	3776729	0	+	0.46	(0.44,0.476]	chr8	350242	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	CSPP1	ENSG00000104218.16	ENST00000676113.1:ENST00000675306.2:ENST00000678156.1:ENST00000262210.11:ENST00000678017.1:ENST00000675869.1:ENST00000521919.6:ENST00000678542.1:ENST00000677619.1:ENST00000676605.1:ENST00000676471.1:ENST00000677256.1:ENST00000676847.1:ENST00000677009.1:ENST00000675820.1:ENST00000676317.1:ENST00000677592.1:ENST00000676573.1:ENST00000678318.1:ENST00000677473.1:ENST00000674993.1:ENST00000678553.1:ENST00000678927.1:ENST00000678204.1:ENST00000679226.1:ENST00000676882.1:ENST00000675955.1:ENST00000678728.1:ENST00000677430.1:ENST00000677455.1:ENST00000677071.1:ENST00000678616.1:ENST00000678362.1:ENST00000679112.1:ENST00000678645.1:ENST00000676567.1:ENST00000677845.1:ENST00000519701.5:ENST00000519163.6:ENST00000676858.1:ENST00000678747.1:ENST00000678821.1:ENST00000678744.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	30	2	2.38219	3.357825	4.33346	0.045456	0.0120349	0.149888	0.0962115
chr8	125195890	125195990	3854532	0	+	0.47	(0.44,0.476]	chr8	355249	132	INTRON	INTRON	NSMCE2	ENSG00000156831.8	ENST00000517532.5:ENST00000287437.8:ENST00000522563.5:ENST00000517315.1	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	2.38219	3.357825	4.33346	0.045456	0.0120349	0.149888	0.0962115
chr11	46633156	46633255	4784831	0	+	0.50505	(0.476,0.515]	chr11	442604	3	INTRON	INTRON	ATG13	ENSG00000175224.17	ENST00000580238.5:ENST00000581416.5:ENST00000529655.5:ENST00000533325.5:ENST00000683050.1:ENST00000583249.5:ENST00000581438.5:ENST00000526508.5:ENST00000530500.5:ENST00000577256.5:ENST00000578626.5:ENST00000524625.5:ENST00000534610.5:ENST00000582547.5:ENST00000359513.8:ENST00000528494.5:ENST00000395549.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	45	2	1.68092	3.3577899999999996	5.03466	0.0474026	0.00252065	0.169265	0.0446195
chr15	72756545	72756643	6220131	0	-	0.510204	(0.476,0.515]	chr15	593831	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	ADPGK	ENSG00000159322.18	ENST00000456471.3:ENST00000311669.12:ENST00000569534.5:ENST00000567941.5:ENST00000562621.1:ENST00000563907.5:ENST00000569517.5:ENST00000567733.1:ENST00000565814.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	45	2	1.68092	3.3577899999999996	5.03466	0.0474026	0.00252065	0.169265	0.0446195
chr7	117033684	117033784	3386794	0	+	0.46	(0.44,0.476]	chr7	317151	103	INTRON	INTRON	ST7:ST7-OT4	ENSG00000004866.22:ENSG00000214188.9	ENST00000393446.6:ENST00000265437.9:ENST00000393451.7:ENST00000438863.5:ENST00000393449.5:ENST00000443979.5:ENST00000323984.8:ENST00000417919.5:ENST00000446490.5:ENST00000471110.5:ENST00000422922.5:ENST00000432298.5:ENST00000449366.5:ENST00000487459.5:ENST00000393443.5:ENST00000467538.5:ENST00000434836.5:ENST00000465133.5:ENST00000477742.5:ENST00000462544.1:ENST00000393444.7:ENST00000393447.8	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:nonsense_mediated_decay:lncRNA:processed_transcript	3	45	2	1.62896	3.357775	5.08659	0.0546679	0.00226401	0.182674	0.0425438
chr1	204406513	204406613	621988	0	-	0.5	(0.476,0.515]	chr1	73940	2	SS3_PROX	SS3_PROX:INTRON	PPP1R15B	ENSG00000158615.10	ENST00000693720.1:ENST00000367188.5:ENST00000689921.1:ENST00000690849.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	64	2	3.07422	3.357745	3.64127	0.00506023	6.42302e-4	0.0646039	0.0231685
chr19	12550462	12550557	7139949	0	-	0.515789	(0.515,0.57]	chr19	720343	1	CDS	CDS:EXON_MRNA:INTRON	ZNF564	ENSG00000249709.8	ENST00000339282.12:ENST00000427105.1:ENST00000596193.1:ENST00000416136.1:ENST00000465410.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	86	2	2.57713	3.3577399999999997	4.13835	0.00176427	2.53131e-5	0.0376652	0.00394111
chr9	37332617	37332717	4119793	0	+	0.31	(0.28,0.32]	chr9	375429	44	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000461038.5:ENST00000488607.5:ENST00000463625.6:ENST00000497924.5:ENST00000481507.5:ENST00000496099.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	48	2	1.81582	3.3577199999999996	4.89962	0.068122	0.00425206	0.184298	0.0595557
chrX	24792111	24792205	7632699	0	+	0.319149	(0.28,0.32]	chrX	781732	4	EXON_LNCRNA	EXON_LNCRNA:INTRON	POLA1	ENSG00000101868.13	ENST00000672178.1:ENST00000379068.8:ENST00000379059.7:ENST00000611764.2:ENST00000480125.1:ENST00000677083.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	48	2	1.81582	3.3577199999999996	4.89962	0.068122	0.00425206	0.184298	0.0595557
chr11	65191732	65191832	4804489	0	+	0.33	(0.32,0.35]	chr11	446277	26	INTRON	INTRON	CAPN1	ENSG00000014216.16	ENST00000533820.5:ENST00000533129.5:ENST00000524773.5:ENST00000279247.11:ENST00000527323.5:ENST00000533079.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	50	2	1.88255	3.35771	4.83287	0.0269187	0.0095071	0.135288	0.0817766
chr8	70581668	70581768	3966923	0	-	0.33	(0.32,0.35]	chr8	363911	63	INTRON	INTRON	TRAM1	ENSG00000067167.8	ENST00000262213.7:ENST00000521425.5	protein_coding	protein_coding	protein_coding	protein_coding	3	50	2	1.88255	3.35771	4.83287	0.0269187	0.0095071	0.135288	0.0817766
chr16	85496890	85496990	6414799	0	+	0.48	(0.476,0.515]	chr16	615465	1376	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	3	51	2	2.01618	3.35768	4.69918	0.0180082	0.00400966	0.106756	0.057767
chr14	20311649	20311700	5832923	0	-	0.470588	(0.44,0.476]	chr14	553902	1	CDS	CDS:UTR3:EXON_MRNA	CCNB1IP1	ENSG00000100814.18	ENST00000353689.8:ENST00000437553.6:ENST00000398160.6:ENST00000358932.9:ENST00000398169.7:ENST00000398163.6:ENST00000554184.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	52	2	1.75023	3.35757	4.96491	0.0240995	0.0034249	0.129929	0.0517761
chr10	21709157	21709255	4406182	0	+	0.285714	(0.28,0.32]	chr10	406543	1	INTRON	INTRON	MLLT10	ENSG00000078403.17	ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000651298.1:ENST00000377059.7:ENST00000651382.1:ENST00000438473.6:ENST00000420525.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	60	2	1.56118	3.35738	5.15358	0.0467152	0.0052282	0.1676	0.0633615
chr7	73004417	73004511	3554167	0	-	0.297872	(0.28,0.32]	chr7	330671	3	INTRON	INTRON	STAG3L3	ENSG00000174353.17	ENST00000436857.5:ENST00000428423.5:ENST00000448173.5:ENST00000423834.6:ENST00000569650.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	4	60	2	1.56118	3.35738	5.15358	0.0467152	0.0052282	0.1676	0.0633615
chr10	70413825	70413925	4447172	0	+	0.35	(0.32,0.35]	chr10	410345	89	INTRON	INTRON	EIF4EBP2	ENSG00000148730.7	ENST00000373218.5	protein_coding	protein_coding	protein_coding	protein_coding	4	57	2	1.63843	3.35736	5.07629	0.0360919	0.00468114	0.152563	0.0600108
chr3	100711468	100711568	1467954	0	+	0.38	(0.378,0.408]	chr3	153840	4	SS5_PROX	SS5_PROX:INTRON	TFG	ENSG00000114354.15	ENST00000675047.1:ENST00000490574.6:ENST00000675543.1:ENST00000676308.1:ENST00000675499.1:ENST00000674699.1:ENST00000418917.7:ENST00000675553.1:ENST00000620299.5:ENST00000675246.1:ENST00000675692.1:ENST00000676276.1:ENST00000676054.1:ENST00000675890.1:ENST00000675011.1:ENST00000675586.1:ENST00000674645.1:ENST00000675958.1:ENST00000674798.1:ENST00000676010.1:ENST00000675591.1:ENST00000479672.6:ENST00000675420.1:ENST00000674615.1:ENST00000676431.1:ENST00000674758.1:ENST00000240851.9:ENST00000675243.1:ENST00000676111.1:ENST00000476228.5:ENST00000463568.6:ENST00000676395.1:ENST00000487505.6:ENST00000615993.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	46	2	1.59317	3.3572249999999997	5.12128	0.0603812	0.00251746	0.19151	0.0446195
chr8	42009830	42009930	3940884	0	-	0.4	(0.378,0.408]	chr8	361223	219	INTRON	INTRON	KAT6A	ENSG00000083168.11	ENST00000406337.6:ENST00000265713.8:ENST00000396930.4:ENST00000648335.1:ENST00000649827.1:ENST00000485568.5:ENST00000647809.1:ENST00000648030.1:ENST00000650356.1:ENST00000470574.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	46	2	1.59317	3.3572249999999997	5.12128	0.0603812	0.00251746	0.19151	0.0446195
chr1	31022796	31022896	412464	0	-	0.36	(0.35,0.378]	chr1	49725	153	INTRON	INTRON	PUM1	ENSG00000134644.16	ENST00000426105.7:ENST00000373747.7:ENST00000257075.9:ENST00000424085.6:ENST00000525843.5:ENST00000440538.6:ENST00000373741.8:ENST00000373742.6:ENST00000526215.5:ENST00000525948.5:ENST00000480602.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	67	2	3.17244	3.35715	3.54186	0.00487788	8.14353e-4	0.0607461	0.02604
chr8	31059465	31059565	3728191	0	+	0.3	(0.28,0.32]	chr8	346534	2	SS5_PROX	SS5_PROX:INTRON	WRN	ENSG00000165392.11	ENST00000650667.1:ENST00000298139.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	218	2	3.19005	3.35709	3.52413	1.7873e-4	1.55181e-5	0.0121697	0.00296742
chr18	57605556	57605656	6980537	0	-	0.39	(0.378,0.408]	chr18	690660	3	SS5_PROX	SS5_PROX:INTRON	NARS1	ENSG00000134440.12	ENST00000256854.10:ENST00000589314.1:ENST00000586807.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	60	2	1.70953	3.35706	5.00459	0.0190881	0.00371142	0.119229	0.0535094
chr15	22507617	22507716	5974643	0	+	0.525253	(0.515,0.57]	chr15	568077	116	INTRON	INTRON	HERC2P2	ENSG00000276550.5	ENST00000613386.4	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	2	37	2	2.21273	3.3568749999999996	4.50102	0.0196151	0.00510768	0.109486	0.0646039
chr1	236805455	236805549	342597	0	+	0.468085	(0.44,0.476]	chr1	39816	15	INTRON	INTRON	MTR	ENSG00000116984.15	ENST00000680454.1:ENST00000366577.10:ENST00000674797.2:ENST00000652435.1:ENST00000679569.1:ENST00000650888.1:ENST00000463959.1:ENST00000535889.6:ENST00000651455.1:ENST00000681102.1:ENST00000679842.1:ENST00000681177.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	160	2	3.35423	3.35654	3.35885	4.16949e-5	2.39954e-5	0.00547677	0.00383194
chr6	166368532	166368632	3263166	0	-	0.38	(0.378,0.408]	chr6	302972	4	SS5_PROX	SS5_PROX:INTRON	MPC1	ENSG00000060762.19	ENST00000341756.10:ENST00000621630.1:ENST00000621685.4:ENST00000360961.11:ENST00000487218.5:ENST00000366868.5:ENST00000475708.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	104	2	2.59025	3.35652	4.12279	0.00217503	3.95714e-5	0.0417893	0.00509892
chr22	47855792	47855890	7541623	0	+	0.377551	(0.35,0.378]	chr22	770789	10	EXON_LNCRNA	EXON_LNCRNA:INTRON	ENSG00000224271	ENSG00000224271.7	ENST00000664761.1:ENST00000650683.1:ENST00000651536.1:ENST00000651445.1:ENST00000650660.1:ENST00000651056.1:ENST00000652399.1:ENST00000652123.1:ENST00000652505.1:ENST00000652030.2:ENST00000651403.1:ENST00000652228.1:ENST00000651124.1:ENST00000651003.1:ENST00000651948.2:ENST00000651293.1:ENST00000651939.1:ENST00000651638.1:ENST00000670853.1:ENST00000652080.1:ENST00000651294.1:ENST00000651538.1:ENST00000651033.1:ENST00000651584.1	lncRNA	lncRNA	lncRNA	lncRNA	2	43	2	1.81767	3.3564499999999997	4.89523	0.0640429	0.00253947	0.177882	0.0465056
chr1	19310631	19310730	387410	0	-	0.434343	(0.408,0.44]	chr1	46331	16	INTRON	INTRON	AKR7A2	ENSG00000053371.13	ENST00000235835.8:ENST00000330072.9:ENST00000489286.5:ENST00000492217.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	30	2	2.27698	3.35639	4.4358	0.0583528	0.00893097	0.167723	0.0849778
chr1	241861902	241862002	344517	0	+	0.41	(0.408,0.44]	chr1	40132	4	SS5_PROX	SS5_PROX:INTRON	EXO1	ENSG00000174371.17	ENST00000366548.8:ENST00000348581.9:ENST00000518483.5	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	2.27698	3.35639	4.4358	0.0583528	0.00893097	0.167723	0.0849778
chr10	5688947	5689046	4384382	0	+	0.434343	(0.408,0.44]	chr10	404456	34	INTRON	INTRON	TASOR2	ENSG00000108021.21	ENST00000695832.1:ENST00000328090.9:ENST00000695737.1:ENST00000695833.1:ENST00000695834.1:ENST00000695835.1:ENST00000695836.1:ENST00000473789.5:ENST00000477043.5:ENST00000496681.5:ENST00000480839.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	30	2	2.27698	3.35639	4.4358	0.0583528	0.00893097	0.167723	0.0849778
chr19	17051316	17051407	7150820	0	-	0.43956	(0.408,0.44]	chr19	722491	8	INTRON	INTRON	HAUS8	ENSG00000131351.15	ENST00000253669.10:ENST00000448593.6:ENST00000597917.1:ENST00000593360.1:ENST00000598517.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	30	2	2.27698	3.35639	4.4358	0.0583528	0.00893097	0.167723	0.0849778
chr19	23754622	23754722	7164127	0	-	0.43	(0.408,0.44]	chr19	724061	4	SS5_PROX	SS5_PROX:INTRON	ZNF681	ENSG00000196172.9	ENST00000402377.3:ENST00000528059.1:ENST00000531570.1	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	2.27698	3.35639	4.4358	0.0583528	0.00893097	0.167723	0.0849778
chr19	45718878	45718978	7193067	0	-	0.41	(0.408,0.44]	chr19	728464	16	INTRON	INTRON	FBXO46	ENSG00000177051.6	ENST00000317683.4:ENST00000586899.1	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	2.27698	3.35639	4.4358	0.0583528	0.00893097	0.167723	0.0849778
chr22	30405069	30405169	7576706	0	-	0.42	(0.408,0.44]	chr22	775161	164	INTRON	INTRON	RNF215	ENSG00000099999.15	ENST00000431544.2	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	2.27698	3.35639	4.4358	0.0583528	0.00893097	0.167723	0.0849778
chr5	141566955	141567055	2739639	0	-	0.44	(0.408,0.44]	chr5	258073	64	INTRON	INTRON	DIAPH1	ENSG00000131504.18	ENST00000647433.1:ENST00000389054.8:ENST00000518047.5	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	2.27698	3.35639	4.4358	0.0583528	0.00893097	0.167723	0.0849778
chr6	52368865	52368964	2875534	0	+	0.434343	(0.408,0.44]	chr6	272897	60	INTRON	INTRON	PAQR8:EFHC1	ENSG00000170915.9:ENSG00000096093.16	ENST00000512121.1:ENST00000635984.1:ENST00000637849.1:ENST00000635760.1:ENST00000442253.3:ENST00000491749.2:ENST00000360726.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	30	2	2.27698	3.35639	4.4358	0.0583528	0.00893097	0.167723	0.0849778
chr12	123617457	123617557	5243320	0	+	0.35	(0.32,0.35]	chr12	498342	3	SS3_PROX	SS3_PROX:INTRON	DDX55	ENSG00000111364.16	ENST00000542286.5:ENST00000238146.9:ENST00000544738.5:ENST00000538744.5:ENST00000539934.5:ENST00000541259.1:ENST00000543016.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	46	2	1.99307	3.3563849999999995	4.7197	0.04271	0.00568521	0.148082	0.0678837
chr13	110905432	110905532	5650552	0	-	0.32	(0.28,0.32]	chr13	538380	2	SS3_PROX	SS3_PROX:INTRON	ANKRD10	ENSG00000088448.14	ENST00000267339.6:ENST00000489973.6:ENST00000310847.8:ENST00000465753.1:ENST00000494859.5:ENST00000464579.1:ENST00000463156.1:ENST00000460846.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	125	2	2.74601	3.35628	3.96655	0.00100442	2.88499e-4	0.0292217	0.0156418
chr22	20949110	20949210	7480835	0	+	0.52	(0.515,0.57]	chr22	763096	145	INTRON	INTRON	CRKL	ENSG00000099942.13	ENST00000354336.8:ENST00000411769.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	86	2	2.64171	3.356195	4.07068	0.00130576	3.78716e-5	0.0331539	0.00493296
chr22	19406180	19406280	7554165	0	-	0.39	(0.378,0.408]	chr22	772297	3	SS3_PROX	SS3_PROX:INTRON	HIRA:C22orf39	ENSG00000100084.14:ENSG00000242259.9	ENST00000263208.5:ENST00000340170.8:ENST00000509549.5:ENST00000464189.5:ENST00000452818.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	64	2	3.19368	3.35614	3.5186	0.00426861	8.45009e-4	0.0573912	0.0263813
chr1	8809923	8810022	373710	0	-	0.363636	(0.35,0.378]	chr1	43563	30	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000656437.1:ENST00000659924.1	protein_coding	protein_coding	protein_coding	protein_coding	2	40	2	2.23043	3.356135	4.48184	0.0191702	0.0187487	0.117523	0.108861
chr15	55334804	55334903	6029734	0	+	0.525253	(0.515,0.57]	chr15	574517	4	INTRON	INTRON	PIGB	ENSG00000069943.10	ENST00000565367.5:ENST00000164305.10:ENST00000570059.1:ENST00000539642.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	34	2	2.11313	3.356135	4.59914	0.0256725	0.00616166	0.133676	0.0676501
chr3	172787472	172787572	1563599	0	+	0.36	(0.35,0.378]	chr3	161807	5	INTRON	INTRON	ECT2	ENSG00000114346.14	ENST00000232458.9:ENST00000540509.5:ENST00000392692.8:ENST00000417960.5:ENST00000441497.6	protein_coding	protein_coding	protein_coding	protein_coding	2	40	2	2.23043	3.356135	4.48184	0.0191702	0.0187487	0.117523	0.108861
chr7	44419839	44419938	3527579	0	-	0.363636	(0.35,0.378]	chr7	328965	62	INTRON	INTRON	NUDCD3	ENSG00000015676.18	ENST00000355451.8:ENST00000460110.5:ENST00000493613.5:ENST00000472246.5:ENST00000464812.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	40	2	2.23043	3.356135	4.48184	0.0191702	0.0187487	0.117523	0.108861
chr9	111415328	111415416	4314585	0	-	0.306818	(0.28,0.32]	chr9	396748	3	INTRON	INTRON	ECPAS	ENSG00000136813.15	ENST00000684092.1:ENST00000338205.9:ENST00000259335.8:ENST00000602447.5	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	2.18975	3.35604	4.52233	0.0776042	0.0129279	0.196285	0.0990564
chr19	34347376	34347476	7052329	0	+	0.57	(0.515,0.57]	chr19	703315	1	SS3_PROX	SS3_PROX:INTRON	GARRE1	ENSG00000166398.14	ENST00000299505.8:ENST00000588338.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	34	2	1.94945	3.3559449999999997	4.76244	0.0414068	0.00362147	0.161557	0.0533855
chr3	47473925	47474025	1682839	0	-	0.54	(0.515,0.57]	chr3	171885	12	INTRON	INTRON	SCAP	ENSG00000114650.21	ENST00000265565.10:ENST00000441517.6:ENST00000320017.10:ENST00000416208.5:ENST00000416847.5:ENST00000448217.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	34	2	1.94945	3.3559449999999997	4.76244	0.0414068	0.00362147	0.161557	0.0533855
chr1	39866766	39866866	428105	0	-	0.4	(0.378,0.408]	chr1	52028	7	INTRON	INTRON	TRIT1	ENSG00000043514.17	ENST00000316891.10:ENST00000648678.1:ENST00000537440.5:ENST00000372818.5:ENST00000462797.5:ENST00000441669.6:ENST00000495175.6:ENST00000491865.5:ENST00000541099.5:ENST00000492612.6:ENST00000489945.5:ENST00000486825.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	64	2	1.38218	3.35593	5.32968	0.0444424	0.00119786	0.162728	0.0315806
chr4	82830045	82830143	2179458	0	-	0.285714	(0.28,0.32]	chr4	214261	6	INTRON	INTRON	SEC31A	ENSG00000138674.17	ENST00000395310.7:ENST00000513858.5:ENST00000348405.8:ENST00000503937.5:ENST00000448323.5:ENST00000311785.11:ENST00000509142.5:ENST00000443462.6:ENST00000500777.6:ENST00000505472.5:ENST00000355196.6:ENST00000508502.5:ENST00000264405.9:ENST00000505984.5:ENST00000511338.1:ENST00000514362.5:ENST00000515749.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	61	2	1.72287	3.3557949999999996	4.98872	0.0286502	0.00838468	0.139456	0.0774402
chr13	28247017	28247117	5461919	0	+	0.34	(0.32,0.35]	chr13	523271	66	INTRON	INTRON	PAN3	ENSG00000152520.14	ENST00000503791.5:ENST00000380958.8:ENST00000399613.1:ENST00000483842.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	41	2	2.01768	3.35574	4.6938	0.0361337	0.0137794	0.152563	0.0949306
chr8	108245443	108245542	4023245	0	-	0.40404	(0.378,0.408]	chr8	367690	21	EXON_MRNA	EXON_MRNA:INTRON	EIF3E	ENSG00000104408.11	ENST00000678042.1:ENST00000678773.1:ENST00000677409.1:ENST00000676892.1:ENST00000523674.2:ENST00000677674.1:ENST00000220849.10:ENST00000678937.1:ENST00000677084.1:ENST00000676706.1:ENST00000518100.6:ENST00000677040.1:ENST00000676698.1:ENST00000522352.6:ENST00000521297.2:ENST00000519030.6:ENST00000519627.2:ENST00000518345.2:ENST00000522445.6:ENST00000678334.1:ENST00000678023.1:ENST00000678797.1:ENST00000677614.1:ENST00000676642.1:ENST00000677965.1:ENST00000678901.1:ENST00000678243.1:ENST00000676663.1:ENST00000679198.1:ENST00000678004.1:ENST00000678881.1:ENST00000677590.1:ENST00000677272.1:ENST00000677746.1:ENST00000677447.1:ENST00000676548.1:ENST00000676487.1:ENST00000521440.6:ENST00000518442.5:ENST00000522887.1:ENST00000518634.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	87	2	2.82967	3.3556	3.88153	0.00189968	2.49905e-4	0.0402736	0.0146029
chr5	66165392	66165491	2372710	0	+	0.444444	(0.44,0.476]	chr5	228682	6	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	SREK1	ENSG00000153914.16	ENST00000334121.11:ENST00000520953.5:ENST00000522912.5:ENST00000524111.5:ENST00000380918.7:ENST00000284041.7:ENST00000520580.5:ENST00000519259.5:ENST00000523655.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	63	2	1.4592	3.355495	5.25179	0.0342963	0.00124521	0.147255	0.0322969
chr19	36231595	36231694	7057591	0	+	0.343434	(0.32,0.35]	chr19	704670	24	INTRON	INTRON	ZNF146	ENSG00000167635.12	ENST00000456324.5:ENST00000591063.5:ENST00000443387.3:ENST00000586094.5:ENST00000587285.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	41	2	1.81328	3.35548	4.89768	0.0615716	0.00793135	0.193423	0.076155
chr8	144886639	144886739	4087388	0	-	0.35	(0.32,0.35]	chr8	372302	4	SS5_PROX	SS5_PROX:INTRON	ZNF250	ENSG00000196150.14	ENST00000528258.5:ENST00000529780.5:ENST00000533543.5:ENST00000292579.11:ENST00000417550.7:ENST00000533221.5:ENST00000533622.5:ENST00000525694.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	41	2	1.81328	3.35548	4.89768	0.0615716	0.00793135	0.193423	0.076155
chr3	20075348	20075447	1376777	0	+	0.434343	(0.408,0.44]	chr3	145093	25	INTRON	INTRON	KAT2B	ENSG00000114166.8	ENST00000263754.5:ENST00000426228.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	45	2	1.81759	3.35543	4.89327	0.0316273	0.00458906	0.144405	0.0595107
chr6	20438689	20438785	2827816	0	+	0.375	(0.35,0.378]	chr6	265579	3	INTRON	INTRON	E2F3:E2F3-IT1	ENSG00000112242.16:ENSG00000224707.1	ENST00000346618.8:ENST00000535432.2:ENST00000433182.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	2	69	2	3.16371	3.355275	3.54684	0.00383956	0.00119142	0.0562562	0.0315806
chr1	61206455	61206555	128637	0	+	0.38	(0.378,0.408]	chr1	14782	25	INTRON	INTRON	NFIA	ENSG00000162599.17	ENST00000371191.5:ENST00000664495.1:ENST00000476646.5:ENST00000407417.7:ENST00000479364.1:ENST00000371189.8:ENST00000670151.1:ENST00000664149.1:ENST00000662015.1:ENST00000403491.8:ENST00000371187.7:ENST00000485903.6:ENST00000371185.6:ENST00000371184.6:ENST00000663597.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	31	2	2.38873	3.355235	4.32174	0.0458857	0.0132362	0.149888	0.0999551
chr11	47252143	47252242	4788040	0	+	0.40404	(0.378,0.408]	chr11	442918	12	INTRON	INTRON	NR1H3	ENSG00000025434.19	ENST00000616973.4:ENST00000527464.5:ENST00000495866.5:ENST00000529540.5:ENST00000405576.5:ENST00000395397.7:ENST00000481020.5:ENST00000481889.6:ENST00000532630.1:ENST00000531660.5:ENST00000487913.5:ENST00000436778.5:ENST00000407404.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	31	2	2.38873	3.355235	4.32174	0.0458857	0.0132362	0.149888	0.0999551
chr16	85806066	85806163	6416708	0	+	0.402062	(0.378,0.408]	chr16	615598	3	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	COX4I1	ENSG00000131143.10	ENST00000568339.5:ENST00000568794.5:ENST00000562336.5:ENST00000253452.8:ENST00000561569.5:ENST00000566405.5:ENST00000564544.1:ENST00000564903.1:ENST00000564648.1:ENST00000569997.1:ENST00000562929.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	31	2	2.38873	3.355235	4.32174	0.0458857	0.0132362	0.149888	0.0999551
chr2	17667791	17667888	1073213	0	-	0.381443	(0.378,0.408]	chr2	114504	9	INTRON	INTRON	SMC6	ENSG00000163029.16	ENST00000351948.8:ENST00000448223.7:ENST00000481708.1:ENST00000402989.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	31	2	2.38873	3.355235	4.32174	0.0458857	0.0132362	0.149888	0.0999551
chr1	28917771	28917871	58988	0	+	0.49	(0.476,0.515]	chr1	7621	26	INTRON	INTRON	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000647918.1:ENST00000646800.1:ENST00000644342.1:ENST00000646189.1:ENST00000482464.6:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000646260.1:ENST00000373798.5:ENST00000644600.1:ENST00000649674.1:ENST00000643173.1:ENST00000343067.9:ENST00000644780.1:ENST00000650265.1:ENST00000648181.1:ENST00000643604.1:ENST00000648891.1:ENST00000373797.2:ENST00000349460.9:ENST00000645184.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	45	2	1.80284	3.355225	4.90761	0.033161	0.00386428	0.145899	0.0542786
chr1	35926858	35926957	71101	0	+	0.414141	(0.408,0.44]	chr1	9124	73	UTR3	UTR3:EXON_MRNA	AGO1	ENSG00000092847.13	ENST00000373204.6:ENST00000674426.1	protein_coding	protein_coding	protein_coding	protein_coding	3	45	2	1.6306	3.3552150000000003	5.07983	0.0544158	0.00247652	0.182272	0.0446195
chr6	34330766	34330866	3084154	0	-	0.32	(0.28,0.32]	chr6	288627	347	INTRON	INTRON	NUDT3:RPS10-NUDT3	ENSG00000272325.2:ENSG00000270800.3	ENST00000607016.2:ENST00000639725.1:ENST00000639877.1:ENST00000605528.2	protein_coding	protein_coding	protein_coding	protein_coding	4	68	2	1.51187	3.355145	5.19842	0.0598267	0.00152333	0.169278	0.0360297
chr10	31926290	31926390	4590297	0	-	0.43	(0.408,0.44]	chr10	423177	154	INTRON	INTRON	ARHGAP12	ENSG00000165322.18	ENST00000344936.7:ENST00000375245.8:ENST00000396144.8:ENST00000375250.9	protein_coding	protein_coding	protein_coding	protein_coding	4	52	2	1.7519	3.355035	4.95817	0.0239555	0.00372419	0.129259	0.0535094
chr10	133411026	133411126	4540389	0	+	0.31	(0.28,0.32]	chr10	419095	79	INTRON	INTRON	MTG1	ENSG00000148824.19	ENST00000477902.6:ENST00000317502.11:ENST00000432508.3:ENST00000460848.5:ENST00000473735.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	78	2	2.96187	3.354965	3.74806	0.0114995	4.11943e-4	0.0889104	0.0181365
chr16	89394331	89394427	6542630	0	-	0.625	(0.57,1]	chr16	634244	13	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000647238.1:ENST00000644045.1:ENST00000643147.1:ENST00000644139.1:ENST00000568512.6:ENST00000566973.1:ENST00000562211.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	37	2	1.50772	3.354935	5.20215	0.0388955	8.28896e-5	0.16071	0.00812487
chr3	185922518	185922616	1886442	0	-	0.397959	(0.378,0.408]	chr3	188621	5	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	TRA2B	ENSG00000136527.19	ENST00000453386.7:ENST00000492417.5:ENST00000463328.5:ENST00000259043.11:ENST00000487615.5:ENST00000466832.5:ENST00000456380.5:ENST00000382191.4:ENST00000465245.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	38	2	1.97143	3.35491	4.73839	0.0398704	0.00837252	0.161534	0.0774402
chr9	94171372	94171471	4161120	0	+	0.383838	(0.378,0.408]	chr9	379417	46	INTRON	INTRON	MIRLET7A1HG	ENSG00000269929.4	ENST00000652769.1:ENST00000652620.1:ENST00000602703.1:ENST00000660581.1	lncRNA	lncRNA	lncRNA	lncRNA	2	38	2	1.97143	3.35491	4.73839	0.0398704	0.00837252	0.161534	0.0774402
chr7	73695241	73695338	3331693	0	+	0.515464	(0.515,0.57]	chr7	309907	9	EXON_MRNA	EXON_MRNA:INTRON	BUD23	ENSG00000071462.12	ENST00000421744.5:ENST00000265758.7:ENST00000436944.5:ENST00000463307.5:ENST00000423497.5:ENST00000430270.5:ENST00000430446.2:ENST00000442099.1:ENST00000453316.1:ENST00000471215.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	136	2	3.29162	3.35481	3.418	3.90524e-5	1.18438e-5	0.00533644	0.0025447
chr2	173953773	173953873	1268955	0	-	0.32	(0.28,0.32]	chr2	134213	190	INTRON	INTRON	SP3	ENSG00000172845.18	ENST00000650743.1:ENST00000310015.12:ENST00000416195.1:ENST00000418194.7:ENST00000652005.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	83	2	2.97333	3.354795	3.73626	0.00857834	7.58796e-4	0.083729	0.025219
chr10	73028170	73028269	4647148	0	-	0.292929	(0.28,0.32]	chr10	427494	109	INTRON	INTRON	P4HA1	ENSG00000122884.13	ENST00000394890.7:ENST00000307116.6:ENST00000373008.6:ENST00000440381.5:ENST00000263556.3	protein_coding	protein_coding	protein_coding	protein_coding	3	104	2	3.24743	3.354765	3.4621	0.00218379	3.55762e-4	0.0417893	0.0168968
chr17	20876247	20876347	6576141	0	+	0.28	[0,0.28]	chr17	639372	72	INTRON	INTRON	CCDC144NL-AS1	ENSG00000233098.10	ENST00000577537.5:ENST00000692759.1:ENST00000443508.8:ENST00000692309.1:ENST00000439794.6:ENST00000417232.6:ENST00000583962.2:ENST00000582324.5:ENST00000577860.5	lncRNA	lncRNA	lncRNA	lncRNA	7	246	2	2.9962	3.354735	3.71327	1.17493e-4	7.61635e-5	0.0098177	0.00732363
chr1	11070314	11070399	376580	0	-	0.470588	(0.44,0.476]	chr1	43969	2	INTRON	INTRON	EXOSC10	ENSG00000171824.14	ENST00000304457.11:ENST00000376936.9:ENST00000474216.5:ENST00000469634.5:ENST00000478271.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	28	2	2.58033	3.35438	4.12843	0.0337192	0.0247511	0.134145	0.131869
chr1	35898420	35898518	70802	0	+	0.459184	(0.44,0.476]	chr1	9067	28	INTRON	INTRON	AGO1	ENSG00000092847.13	ENST00000373206.5:ENST00000373204.6:ENST00000674426.1:ENST00000674304.1:ENST00000635259.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	28	2	2.58033	3.35438	4.12843	0.0337192	0.0247511	0.134145	0.131869
chr1	52524567	52524666	458280	0	-	0.454545	(0.44,0.476]	chr1	55085	82	INTRON	INTRON	TUT4	ENSG00000134744.14	ENST00000371544.7:ENST00000257177.9:ENST00000528642.5:ENST00000484723.6:ENST00000371541.5:ENST00000473856.5:ENST00000355809.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	28	2	2.58033	3.35438	4.12843	0.0337192	0.0247511	0.134145	0.131869
chr1	75754039	75754137	144284	0	+	0.459184	(0.44,0.476]	chr1	16290	28	INTRON	INTRON	ACADM	ENSG00000117054.15	ENST00000679530.1:ENST00000680582.1:ENST00000473018.3:ENST00000680694.1:ENST00000541113.6:ENST00000681063.1:ENST00000681913.1:ENST00000680613.1:ENST00000680805.1:ENST00000681278.1:ENST00000681209.1:ENST00000680691.1:ENST00000681037.1:ENST00000679976.1:ENST00000680749.1:ENST00000681430.1:ENST00000681289.1:ENST00000680964.1:ENST00000679615.1:ENST00000681446.1:ENST00000681680.1:ENST00000681621.1:ENST00000681930.1:ENST00000679509.1:ENST00000680798.1:ENST00000680517.1:ENST00000681361.1:ENST00000681790.1:ENST00000681837.1:ENST00000680743.1:ENST00000681616.1:ENST00000680948.1:ENST00000681916.1:ENST00000526196.5:ENST00000526129.5:ENST00000679709.1:ENST00000370841.9:ENST00000370834.9:ENST00000680844.1:ENST00000681720.1:ENST00000681548.1:ENST00000681450.1:ENST00000679687.1:ENST00000680662.1:ENST00000679704.1:ENST00000525808.5:ENST00000534334.5:ENST00000420607.6:ENST00000680166.1:ENST00000681730.1:ENST00000529059.5:ENST00000532207.6:ENST00000528016.1:ENST00000680315.1:ENST00000481374.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	28	2	2.58033	3.35438	4.12843	0.0337192	0.0247511	0.134145	0.131869
chr1	151206551	151206651	224949	0	+	0.45	(0.44,0.476]	chr1	25634	70	INTRON	INTRON	PIP5K1A	ENSG00000143398.20	ENST00000447555.5:ENST00000349792.9:ENST00000368888.9:ENST00000409426.5:ENST00000368890.8:ENST00000441902.6:ENST00000424999.1:ENST00000454769.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	28	2	2.58033	3.35438	4.12843	0.0337192	0.0247511	0.134145	0.131869
chr15	41375411	41375511	6005213	0	+	0.47	(0.44,0.476]	chr15	571352	3	SS3_PROX	SS3_PROX:INTRON	NUSAP1	ENSG00000137804.14	ENST00000668273.1:ENST00000260359.10:ENST00000558123.5:ENST00000414849.6:ENST00000450592.6:ENST00000559596.6:ENST00000560747.5:ENST00000560177.5:ENST00000557840.5:ENST00000560898.5:ENST00000560318.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	28	2	2.58033	3.35438	4.12843	0.0337192	0.0247511	0.134145	0.131869
chr7	127995001	127995100	3405854	0	+	0.454545	(0.44,0.476]	chr7	318184	36	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000486037.1:ENST00000484767.5:ENST00000470723.5:ENST00000467238.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	28	2	2.58033	3.35438	4.12843	0.0337192	0.0247511	0.134145	0.131869
chr7	139401440	139401538	3438013	0	+	0.44898	(0.44,0.476]	chr7	320347	24	INTRON	INTRON	LUC7L2:FMC1-LUC7L2	ENSG00000146963.18:ENSG00000269955.2	ENST00000541170.7:ENST00000541515.3:ENST00000619796.4:ENST00000354926.9:ENST00000456182.5:ENST00000263545.7:ENST00000463912.5:ENST00000498518.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	28	2	2.58033	3.35438	4.12843	0.0337192	0.0247511	0.134145	0.131869
chr9	96977837	96977937	4298631	0	-	0.47	(0.44,0.476]	chr9	395262	45	INTRON	INTRON	MFSD14C	ENSG00000196312.15	ENST00000647176.1:ENST00000645073.1:ENST00000637864.1:ENST00000652726.1:ENST00000637811.1:ENST00000650909.1	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript:transcribed_unprocessed_pseudogene	1	28	2	2.58033	3.35438	4.12843	0.0337192	0.0247511	0.134145	0.131869
chr21	8402764	8402863	7366577	0	+	0.676768	(0.57,1]	chr21	751814	183	INTRON	INTRON	ENSG00000280441	ENSG00000280441.3	ENST00000623860.3:ENST00000651813.1:ENST00000652379.1:ENST00000651958.1	lncRNA	lncRNA	lncRNA	lncRNA	6	85	2	3.14233	3.354265	3.5662	4.99296e-5	2.33187e-6	0.00578948	0.00106535
chr17	30895391	30895486	6591085	0	+	0.442105	(0.44,0.476]	chr17	641038	6	UTR3	UTR3:EXON_MRNA	ATAD5	ENSG00000176208.9	ENST00000321990.5	protein_coding	protein_coding	protein_coding	protein_coding	18	407	2	2.97272	3.354225	3.73573	8.99533e-7	4.224e-7	5.37848e-4	3.69804e-4
chr19	21037198	21037298	7039281	0	+	0.51	(0.476,0.515]	chr19	701855	5	INTRON	INTRON	ZNF430	ENSG00000118620.13	ENST00000599548.5:ENST00000594110.5:ENST00000261560.10	protein_coding	protein_coding	protein_coding	protein_coding	2	40	2	1.92984	3.3541999999999996	4.77856	0.0466474	0.00305743	0.151522	0.0509893
chr14	27655237	27655337	5849404	0	-	0.33	(0.32,0.35]	chr14	556260	3327	INTRON	INTRON	ENSG00000258932	ENSG00000258932.5	ENST00000553392.5:ENST00000554904.5:ENST00000556890.1:ENST00000555797.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	3	56	2	1.77409	3.35417	4.93425	0.0414296	0.00281048	0.146067	0.0488779
chr10	45999114	45999213	4430653	0	+	0.444444	(0.44,0.476]	chr10	408492	99	INTRON	INTRON	TIMM23	ENSG00000265354.4	ENST00000580018.4	protein_coding	protein_coding	protein_coding	protein_coding	5	114	2	2.33785	3.3541100000000004	4.37037	0.00284182	8.53106e-6	0.0473478	0.00210871
chr11	94811504	94811604	4851528	0	+	0.35	(0.32,0.35]	chr11	452548	108	INTRON	INTRON	AMOTL1	ENSG00000166025.18	ENST00000317829.12:ENST00000433060.3	protein_coding	protein_coding	protein_coding	protein_coding	2	42	2	2.25173	3.3540099999999997	4.45629	0.0246089	0.0180122	0.12011	0.114436
chr1	109382079	109382179	520861	0	-	0.32	(0.28,0.32]	chr1	61195	121	INTRON	INTRON	SORT1	ENSG00000134243.12	ENST00000538502.5:ENST00000256637.8:ENST00000493736.5:ENST00000482236.5:ENST00000633956.1:ENST00000471996.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	33	2	2.67453	3.35399	4.03345	0.0704058	0.021289	0.184298	0.123318
chr1	180655264	180655364	269828	0	+	0.31	(0.28,0.32]	chr1	31614	226	INTRON	INTRON	XPR1	ENSG00000143324.14	ENST00000367590.9:ENST00000367589.3	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	2.67453	3.35399	4.03345	0.0704058	0.021289	0.184298	0.123318
chr16	71913412	71913511	6386786	0	+	0.313131	(0.28,0.32]	chr16	614084	94	INTRON	INTRON	IST1	ENSG00000182149.21	ENST00000568581.5:ENST00000540296.5:ENST00000544564.5:ENST00000541571.6:ENST00000538104.5:ENST00000535424.5:ENST00000606369.5:ENST00000537613.5:ENST00000424485.6:ENST00000566536.5:ENST00000378799.11:ENST00000538565.5:ENST00000329908.12:ENST00000538850.5:ENST00000541918.5:ENST00000378798.9:ENST00000534994.5:ENST00000539186.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	33	2	2.67453	3.35399	4.03345	0.0704058	0.021289	0.184298	0.123318
chr19	5645036	5645136	7005518	0	+	0.31	(0.28,0.32]	chr19	694966	3	SS3_PROX	SS3_PROX:INTRON	SAFB	ENSG00000160633.13	ENST00000589863.5:ENST00000588852.2:ENST00000591666.5:ENST00000292123.9:ENST00000592224.5:ENST00000586934.5:ENST00000454510.5:ENST00000590485.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	33	2	2.67453	3.35399	4.03345	0.0704058	0.021289	0.184298	0.123318
chr22	41850643	41850743	7526173	0	+	0.32	(0.28,0.32]	chr22	769353	169	INTRON	INTRON	SREBF2	ENSG00000198911.12	ENST00000612482.4:ENST00000361204.9:ENST00000424354.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	33	2	2.67453	3.35399	4.03345	0.0704058	0.021289	0.184298	0.123318
chr3	45706479	45706579	1417211	0	+	0.3	(0.28,0.32]	chr3	148668	3	SS3_PROX	SS3_PROX:INTRON	SACM1L	ENSG00000211456.13	ENST00000464524.5:ENST00000455997.5:ENST00000418611.5:ENST00000672477.1:ENST00000463237.5:ENST00000441228.5:ENST00000463347.5:ENST00000438671.3:ENST00000389061.10:ENST00000445499.2:ENST00000478586.3:ENST00000672858.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	33	2	2.67453	3.35399	4.03345	0.0704058	0.021289	0.184298	0.123318
chr4	103195333	103195419	2215580	0	-	0.302326	(0.28,0.32]	chr4	217178	1	SS3_PROX	SS3_PROX:INTRON	CENPE	ENSG00000138778.14	ENST00000380026.8:ENST00000265148.9:ENST00000514974.1	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	2.67453	3.35399	4.03345	0.0704058	0.021289	0.184298	0.123318
chr7	135970128	135970228	3649400	0	-	0.29	(0.28,0.32]	chr7	339214	181	INTRON	INTRON	MTPN	ENSG00000105887.11	ENST00000393085.4:ENST00000435723.1	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	2.67453	3.35399	4.03345	0.0704058	0.021289	0.184298	0.123318
chr11	34460732	34460818	4768880	0	+	0.430233	(0.408,0.44]	chr11	441258	1	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	CAT	ENSG00000121691.7	ENST00000241052.5:ENST00000650153.1:ENST00000530343.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	68	2	1.36246	3.3539700000000003	5.34548	0.0386802	9.40657e-4	0.159946	0.0280776
chr11	68116396	68116495	4972547	0	-	0.525253	(0.515,0.57]	chr11	469439	189	INTRON	INTRON	CHKA	ENSG00000110721.12	ENST00000265689.9:ENST00000356135.9:ENST00000531341.1	protein_coding	protein_coding	protein_coding	protein_coding	2	55	2	3.12663	3.3536349999999997	3.58064	0.00374498	6.54693e-4	0.0562234	0.0233335
chr12	6498623	6498723	5069265	0	+	0.58	(0.57,1]	chr12	478656	30	INTRON	INTRON	NCAPD2	ENSG00000010292.13	ENST00000541399.1:ENST00000539714.5:ENST00000382457.8:ENST00000539084.5:ENST00000315579.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	38	2	1.43111	3.3535600000000003	5.27601	0.0484405	3.73525e-5	0.153635	0.00489903
chr10	48307594	48307647	4430996	0	+	0.396226	(0.378,0.408]	chr10	408557	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MAPK8	ENSG00000107643.17	ENST00000395611.7:ENST00000432379.5:ENST00000374189.6:ENST00000429041.6:ENST00000374179.8:ENST00000426557.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	64	2	3.10274	3.353515	3.60429	0.00586642	5.71664e-4	0.0668095	0.0217398
chr6	147221657	147221757	2988880	0	+	0.26	[0,0.28]	chr6	280001	152	INTRON	INTRON	STXBP5	ENSG00000164506.15	ENST00000321680.11:ENST00000367481.7:ENST00000546097.5:ENST00000367480.7	protein_coding	protein_coding	protein_coding	protein_coding	5	195	2	3.06849	3.3535000000000004	3.63851	2.76554e-4	1.64422e-4	0.0148174	0.0117131
chr2	8973261	8973360	1063264	0	-	0.474747	(0.44,0.476]	chr2	113381	143	INTRON	INTRON	MBOAT2	ENSG00000143797.12	ENST00000305997.8:ENST00000486484.5:ENST00000477073.5:ENST00000462696.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	38	2	2.27304	3.353405	4.43377	0.0162803	0.0158915	0.109464	0.101453
chr21	10449230	10449329	7368487	0	+	0.343434	(0.32,0.35]	chr21	751975	340	INTRON	INTRON	BAGE2	ENSG00000187172.15	ENST00000474011.5:ENST00000470054.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	10	196	2	2.3339	3.353385	4.37287	3.2337e-4	3.1791e-5	0.0159645	0.00471647
chr3	138829303	138829403	1831446	0	-	0.37	(0.35,0.378]	chr3	184062	324	INTRON	INTRON	PIK3CB	ENSG00000051382.9	ENST00000674063.1:ENST00000477593.5:ENST00000462898.5:ENST00000483968.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	67	2	3.2953	3.353345	3.41139	0.0031465	0.00143263	0.0500431	0.0347139
chr8	92874520	92874620	3990851	0	-	0.23	[0,0.28]	chr8	365358	881	INTRON	INTRON	FLJ46284	ENSG00000248858.7	ENST00000504861.2	lncRNA	lncRNA	lncRNA	lncRNA	5	194	2	2.78394	3.353325	3.92271	0.00181034	1.46869e-5	0.0384016	0.00286994
chr5	39023035	39023135	2605134	0	-	0.28	[0,0.28]	chr5	247896	15	INTRON	INTRON	RICTOR	ENSG00000164327.13	ENST00000357387.8:ENST00000511516.5:ENST00000296782.9:ENST00000510711.5:ENST00000513566.1:ENST00000514735.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	35	2	2.5055	3.35328	4.20106	0.0695895	0.0359431	0.184298	0.152322
chr7	64526517	64526617	3536953	0	-	0.24	[0,0.28]	chr7	329902	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	ZNF680	ENSG00000173041.12	ENST00000309683.11:ENST00000476563.1:ENST00000470847.1:ENST00000447137.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	35	2	2.5055	3.35328	4.20106	0.0695895	0.0359431	0.184298	0.152322
chr8	104566935	104567035	4014501	0	-	0.18	[0,0.28]	chr8	367439	346	INTRON	INTRON	LRP12	ENSG00000147650.12	ENST00000424843.6:ENST00000276654.10:ENST00000520770.1:ENST00000519675.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	35	2	2.5055	3.35328	4.20106	0.0695895	0.0359431	0.184298	0.152322
chrX	138947227	138947327	7901035	0	-	0.25	[0,0.28]	chrX	804239	822	INTRON	INTRON	FGF13	ENSG00000129682.16	ENST00000441825.8:ENST00000626909.2:ENST00000436198.5:ENST00000455663.5:ENST00000448673.1:ENST00000421460.1	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	2.5055	3.35328	4.20106	0.0695895	0.0359431	0.184298	0.152322
chr16	74587685	74587785	6525138	0	-	0.51	(0.476,0.515]	chr16	631842	245	INTRON	INTRON	GLG1	ENSG00000090863.12	ENST00000205061.9:ENST00000422840.7:ENST00000447066.6:ENST00000562090.5:ENST00000567951.5:ENST00000627032.2:ENST00000565260.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	98	2	2.81214	3.3532349999999997	3.89433	5.41922e-4	1.98377e-4	0.0211086	0.0129156
chr19	34382197	34382297	7052666	0	+	0.63	(0.57,1]	chr19	703404	2	INTRON	INTRON	GPI	ENSG00000105220.17	ENST00000415930.8:ENST00000588991.7:ENST00000356487.11:ENST00000647446.1:ENST00000586425.2:ENST00000643067.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	19	240	2	2.05001	3.3531950000000004	4.65638	2.31708e-4	1.06937e-12	0.0134479	4.97648e-8
chr21	43875944	43876044	7413897	0	+	0.45	(0.44,0.476]	chr21	755688	82	INTRON	INTRON	AGPAT3	ENSG00000160216.21	ENST00000291572.13:ENST00000448287.5	protein_coding	protein_coding	protein_coding	protein_coding	3	83	2	2.91252	3.3531950000000004	3.79387	0.00164027	2.19099e-4	0.0369207	0.0129737
chr1	218325266	218325366	317569	0	+	0.38	(0.378,0.408]	chr1	36399	173	INTRON	INTRON	RRP15	ENSG00000067533.6	ENST00000366932.4	protein_coding	protein_coding	protein_coding	protein_coding	2	38	2	2.04292	3.3531500000000003	4.66338	0.0326035	0.0103469	0.145164	0.0850389
chr12	62561313	62561413	5152136	0	+	0.38	(0.378,0.408]	chr12	487601	2	SS5_PROX	SS5_PROX:INTRON	MON2	ENSG00000061987.16	ENST00000641654.1:ENST00000546600.5:ENST00000393630.8:ENST00000547095.5:ENST00000552738.5:ENST00000393629.6:ENST00000551307.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	38	2	2.04292	3.3531500000000003	4.66338	0.0326035	0.0103469	0.145164	0.0850389
chr7	105134987	105135085	3601347	0	-	0.397959	(0.378,0.408]	chr7	336081	15	INTRON	INTRON	SRPK2	ENSG00000135250.17	ENST00000393651.8:ENST00000357311.7:ENST00000466917.1:ENST00000485455.1:ENST00000477925.5:ENST00000489828.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	38	2	2.04292	3.3531500000000003	4.66338	0.0326035	0.0103469	0.145164	0.0850389
chr8	129394875	129394974	4059218	0	-	0.40404	(0.378,0.408]	chr8	369574	46	INTRON	INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1:ENST00000676273.1:ENST00000667643.1:ENST00000668791.1:ENST00000663716.1:ENST00000663572.1:ENST00000676148.1:ENST00000667962.1:ENST00000674877.1:ENST00000675316.1:ENST00000674656.1:ENST00000446592.7:ENST00000667341.1:ENST00000675186.1:ENST00000652971.1:ENST00000661447.1:ENST00000674863.1:ENST00000675498.1:ENST00000675527.1:ENST00000676108.1:ENST00000657647.1:ENST00000675589.1:ENST00000675913.1:ENST00000675109.1:ENST00000671632.1:ENST00000671311.1:ENST00000676099.1:ENST00000660652.1:ENST00000675522.1:ENST00000675183.1:ENST00000658861.1:ENST00000663991.1:ENST00000675044.1:ENST00000675435.1:ENST00000674639.1:ENST00000676069.1:ENST00000675532.1:ENST00000674762.1:ENST00000523151.6:ENST00000675948.1:ENST00000665364.1:ENST00000657251.1:ENST00000675166.1:ENST00000674883.1:ENST00000675867.1:ENST00000674580.1:ENST00000675393.1:ENST00000520048.1:ENST00000674906.1:ENST00000676030.1:ENST00000670588.1:ENST00000675072.1:ENST00000664936.1:ENST00000652914.1	lncRNA	lncRNA	lncRNA	lncRNA	2	38	2	2.04292	3.3531500000000003	4.66338	0.0326035	0.0103469	0.145164	0.0850389
chr10	68616521	68616620	4441449	0	+	0.424242	(0.408,0.44]	chr10	409530	151	INTRON	INTRON	TET1	ENSG00000138336.9	ENST00000373644.5	protein_coding	protein_coding	protein_coding	protein_coding	2	62	2	3.15414	3.353145	3.55215	0.00469847	7.01039e-4	0.0600108	0.0241881
chr2	152689469	152689568	1246237	0	-	0.383838	(0.378,0.408]	chr2	132338	78	INTRON	INTRON	PRPF40A	ENSG00000196504.20	ENST00000410080.8:ENST00000545856.8:ENST00000696382.1:ENST00000696381.1:ENST00000354363.11:ENST00000493468.7:ENST00000448428.2:ENST00000467114.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	38	2	1.89621	3.352945	4.80968	0.0488044	0.00679828	0.173377	0.0711802
chr7	152213645	152213745	3679034	0	-	0.38	(0.378,0.408]	chr7	341526	48	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000683200.1:ENST00000682283.1:ENST00000473186.5:ENST00000679882.1:ENST00000680969.1:ENST00000681033.1:ENST00000682176.1:ENST00000679645.1:ENST00000684550.1:ENST00000489110.2:ENST00000681838.1:ENST00000683490.1:ENST00000684623.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	38	2	1.89621	3.352945	4.80968	0.0488044	0.00679828	0.173377	0.0711802
chr6	37332370	37332470	2856069	0	+	0.49	(0.476,0.515]	chr6	270012	13	UTR3	UTR3:EXON_MRNA	TBC1D22B	ENSG00000065491.8	ENST00000373491.3	protein_coding	protein_coding	protein_coding	protein_coding	3	83	2	3.32932	3.3528200000000004	3.37632	0.00195267	1.60666e-4	0.0400465	0.0109124
chr2	87470093	87470142	826068	0	+	0.265306	[0,0.28]	chr2	92412	1	SSB_ADJ	SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CYTOR:ENSG00000284879	ENSG00000222041.12:ENSG00000284879.1	ENST00000642796.1:ENST00000643589.1:ENST00000642451.1:ENST00000646386.1:ENST00000644478.1:ENST00000409139.6:ENST00000331944.10:ENST00000644125.1:ENST00000643743.1:ENST00000644577.1:ENST00000643276.1:ENST00000409898.2:ENST00000419680.6:ENST00000645257.1:ENST00000644976.1:ENST00000643070.1:ENST00000646855.1:ENST00000414584.1:ENST00000455131.5:ENST00000646636.1:ENST00000642293.1:ENST00000423846.5:ENST00000644040.1:ENST00000645138.1:ENST00000437561.2:ENST00000629257.1:ENST00000414030.6	lncRNA	lncRNA	lncRNA	lncRNA	4	144	2	2.56103	3.35276	4.14449	0.00418024	8.60514e-5	0.0571505	0.00783027
chr19	16635668	16635768	7150535	0	-	0.52	(0.515,0.57]	chr19	722432	5	INTRON	INTRON	SMIM7	ENSG00000214046.9	ENST00000465250.6:ENST00000481671.6:ENST00000594662.5:ENST00000597781.5:ENST00000598278.5	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	3	45	2	2.01978	3.3527299999999998	4.68568	0.0165522	0.00270027	0.102621	0.0479115
chr9	111897813	111897912	4184461	0	+	0.454545	(0.44,0.476]	chr9	381684	1	INTRON	INTRON	UGCG	ENSG00000148154.10	ENST00000374279.4:ENST00000489355.1:ENST00000495085.1:ENST00000490110.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	45	2	1.87325	3.3526350000000003	4.83202	0.0265709	0.00525002	0.134088	0.0633615
chr12	54458788	54458888	5331559	0	-	0.3	(0.28,0.32]	chr12	508863	3	SS5_PROX	SS5_PROX:INTRON	GTSF1	ENSG00000170627.11	ENST00000546931.5:ENST00000552397.5:ENST00000305879.8:ENST00000552395.5:ENST00000552336.5:ENST00000546575.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	43	2	1.90263	3.35259	4.80255	0.0503272	0.0137406	0.17488	0.0949306
chr2	75912179	75912279	817281	0	+	0.3	(0.28,0.32]	chr2	91391	393	INTRON	INTRON	ENSG00000287474	ENSG00000287474.1	ENST00000670606.1	lncRNA	lncRNA	lncRNA	lncRNA	2	43	2	1.90263	3.35259	4.80255	0.0503272	0.0137406	0.17488	0.0949306
chr3	15772283	15772383	1623563	0	-	0.31	(0.28,0.32]	chr3	168009	56	INTRON	INTRON	ANKRD28	ENSG00000206560.12	ENST00000399451.6:ENST00000624145.3:ENST00000683139.1:ENST00000412318.5:ENST00000497037.5:ENST00000451422.1:ENST00000498524.5:ENST00000439830.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	43	2	1.90263	3.35259	4.80255	0.0503272	0.0137406	0.17488	0.0949306
chr7	129755276	129755371	3413574	0	+	0.315789	(0.28,0.32]	chr7	319092	2	UTR3	UTR3:EXON_MRNA	NRF1	ENSG00000106459.15	ENST00000393232.6:ENST00000223190.8:ENST00000311967.6:ENST00000393230.6:ENST00000353868.5	protein_coding	protein_coding	protein_coding	protein_coding	2	43	2	1.90263	3.35259	4.80255	0.0503272	0.0137406	0.17488	0.0949306
chr6	10723541	10723641	2810582	0	+	0.46	(0.44,0.476]	chr6	264431	3	SS5_PROX	SS5_PROX:INTRON	TMEM14C	ENSG00000111843.14	ENST00000541412.5:ENST00000229563.6:ENST00000466421.5:ENST00000467415.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	82	2	3.05373	3.35254	3.65135	6.56725e-4	6.34922e-4	0.0232396	0.023163
chr1	29068532	29068632	60518	0	+	0.29	(0.28,0.32]	chr1	7737	4	SS3_PROX	SS3_PROX:INTRON	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000647918.1:ENST00000646800.1:ENST00000644342.1:ENST00000646189.1:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000373798.5:ENST00000644600.1:ENST00000649674.1:ENST00000643173.1:ENST00000343067.9:ENST00000644780.1:ENST00000650265.1:ENST00000643604.1:ENST00000349460.9:ENST00000645111.1:ENST00000643302.1:ENST00000636666.1:ENST00000644848.1:ENST00000644470.1:ENST00000646871.1:ENST00000488277.1:ENST00000490308.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	43	2	1.83771	3.3525099999999997	4.86731	0.0591725	0.0116253	0.189982	0.0889104
chr20	58393337	58393437	7289586	0	+	0.29	(0.28,0.32]	chr20	741668	26	INTRON	INTRON	VAPB	ENSG00000124164.16	ENST00000475243.6:ENST00000395802.7:ENST00000520497.1:ENST00000265619.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	43	2	1.83771	3.3525099999999997	4.86731	0.0591725	0.0116253	0.189982	0.0889104
chr6	167037134	167037232	3033756	0	+	0.306122	(0.28,0.32]	chr6	282692	28	INTRON	INTRON	CEP43	ENSG00000213066.13	ENST00000622353.4:ENST00000366847.9:ENST00000349556.4	protein_coding	protein_coding	protein_coding	protein_coding	2	43	2	1.83771	3.3525099999999997	4.86731	0.0591725	0.0116253	0.189982	0.0889104
chr1	16380574	16380673	35894	0	+	0.515152	(0.476,0.515]	chr1	4353	122	INTRON	INTRON	SZRD1	ENSG00000055070.17	ENST00000475078.1:ENST00000471507.5:ENST00000401089.3:ENST00000486763.5:ENST00000401088.9:ENST00000475554.5:ENST00000476423.5:ENST00000472351.5:ENST00000492354.1:ENST00000472461.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	30	2	2.48527	3.352455	4.21964	0.03496	0.0167715	0.13747500000000001	0.110511
chr14	34852066	34852166	5868211	0	-	0.48	(0.476,0.515]	chr14	557409	230	INTRON	INTRON	BAZ1A	ENSG00000198604.11	ENST00000358716.8:ENST00000360310.6:ENST00000382422.6:ENST00000553573.1:ENST00000553853.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	30	2	2.48527	3.352455	4.21964	0.03496	0.0167715	0.13747500000000001	0.110511
chr19	1972617	1972715	6996068	0	+	0.5	(0.476,0.515]	chr19	693383	23	INTRON	INTRON	CSNK1G2	ENSG00000133275.16	ENST00000255641.13:ENST00000591752.5:ENST00000589350.2:ENST00000589385.5	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	2.48527	3.352455	4.21964	0.03496	0.0167715	0.13747500000000001	0.110511
chr5	37347012	37347111	2602519	0	-	0.494949	(0.476,0.515]	chr5	247481	40	INTRON	INTRON	NUP155	ENSG00000113569.16	ENST00000231498.8:ENST00000381843.6:ENST00000513532.1:ENST00000507233.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	30	2	2.48527	3.352455	4.21964	0.03496	0.0167715	0.13747500000000001	0.110511
chr8	38033208	38033307	3734377	0	+	0.50505	(0.476,0.515]	chr8	346922	21	INTRON	INTRON	EIF4EBP1	ENSG00000187840.5	ENST00000338825.5	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	2.48527	3.352455	4.21964	0.03496	0.0167715	0.13747500000000001	0.110511
chr20	47309655	47309755	7349039	0	-	0.57	(0.515,0.57]	chr20	749337	2	SS5_PROX	SS5_PROX:INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000468376.2:ENST00000435836.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	54	2	3.03037	3.35245	3.67453	0.00608732	3.27949e-4	0.0676501	0.0160995
chr12	121327625	121327723	5436927	0	-	0.357143	(0.35,0.378]	chr12	519876	5	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	ANAPC5	ENSG00000089053.13	ENST00000261819.8:ENST00000535641.5:ENST00000541887.5:ENST00000534976.5:ENST00000441917.6:ENST00000539079.5:ENST00000544314.5:ENST00000535482.1:ENST00000545218.5:ENST00000535472.5:ENST00000538334.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	153	2	2.73273	3.35244	3.97215	1.84105e-4	8.62618e-5	0.0123213	0.00783027
chr17	30709640	30709725	6589579	0	+	0.776471	(0.57,1]	chr17	640835	5	EXON_LNCRNA	EXON_LNCRNA	SUZ12P1	ENSG00000264538.7	ENST00000578070.5:ENST00000579526.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	3	30	2	1.92756	3.35243	4.7773	0.0220439	5.07088e-4	0.115395	0.0202328
chr2	17756547	17756646	706571	0	+	0.292929	(0.28,0.32]	chr2	81835	9	INTRON	INTRON	GEN1	ENSG00000178295.15	ENST00000317402.11:ENST00000381254.7:ENST00000524465.5:ENST00000532257.1	protein_coding	protein_coding	protein_coding	protein_coding	3	58	2	1.56134	3.3523750000000003	5.14341	0.0740624	0.00185891	0.191153	0.039946
chr7	32873713	32873810	3515440	0	-	0.278351	[0,0.28]	chr7	327768	25	INTRON	INTRON	KBTBD2	ENSG00000170852.12	ENST00000304056.9:ENST00000485611.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	58	2	1.88025	3.35229	4.82433	0.029906	0.0200334	0.142135	0.109608
chr1	45872466	45872566	94502	0	+	0.49	(0.476,0.515]	chr1	12696	425	INTRON	INTRON	MAST2	ENSG00000086015.23	ENST00000470809.1:ENST00000361297.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	28	2	2.56868	3.35227	4.13586	0.031846	0.0256676	0.133676	0.13151
chr16	12284829	12284929	6294415	0	+	0.48	(0.476,0.515]	chr16	602451	64	INTRON	INTRON	SNX29	ENSG00000048471.14	ENST00000566228.6:ENST00000564791.5	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	2.56868	3.35227	4.13586	0.031846	0.0256676	0.133676	0.13151
chr2	74158690	74158790	1156925	0	-	0.51	(0.476,0.515]	chr2	123697	2	SS5_PROX	SS5_PROX:INTRON	MOB1A	ENSG00000114978.18	ENST00000396049.5	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	2.56868	3.35227	4.13586	0.031846	0.0256676	0.133676	0.13151
chr2	108724155	108724255	847456	0	+	0.5	(0.476,0.515]	chr2	94788	41	INTRON	INTRON	RANBP2	ENSG00000153201.16	ENST00000283195.11:ENST00000425282.4:ENST00000629728.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	28	2	2.56868	3.35227	4.13586	0.031846	0.0256676	0.133676	0.13151
chr21	37098253	37098347	7405088	0	+	0.478723	(0.476,0.515]	chr21	754588	4	UTR3	UTR3:EXON_MRNA:INTRON	TTC3	ENSG00000182670.14	ENST00000492275.6:ENST00000418766.6:ENST00000485402.5:ENST00000450533.6:ENST00000438055.5:ENST00000696812.1:ENST00000696811.1:ENST00000463216.6:ENST00000481605.6:ENST00000540756.5:ENST00000494243.5:ENST00000399010.5:ENST00000411496.2:ENST00000399017.6:ENST00000354749.6:ENST00000479930.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	28	2	2.56868	3.35227	4.13586	0.031846	0.0256676	0.133676	0.13151
chr3	138666999	138667099	1829797	0	-	0.48	(0.476,0.515]	chr3	183941	14	INTRON	INTRON	PIK3CB	ENSG00000051382.9	ENST00000674063.1:ENST00000289153.6:ENST00000477593.5:ENST00000469284.6:ENST00000544716.5:ENST00000462898.5:ENST00000481749.5:ENST00000493568.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	28	2	2.56868	3.35227	4.13586	0.031846	0.0256676	0.133676	0.13151
chr6	15383944	15384044	2824327	0	+	0.5	(0.476,0.515]	chr6	265198	93	INTRON	INTRON	JARID2	ENSG00000008083.14	ENST00000341776.7:ENST00000397311.4	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	2.56868	3.35227	4.13586	0.031846	0.0256676	0.133676	0.13151
chr6	43585890	43585988	2871575	0	+	0.479592	(0.476,0.515]	chr6	272265	24	INTRON	INTRON	POLH	ENSG00000170734.12	ENST00000372236.9:ENST00000372226.1:ENST00000443535.1	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	2.56868	3.35227	4.13586	0.031846	0.0256676	0.133676	0.13151
chr6	131647027	131647127	2960281	0	+	0.51	(0.476,0.515]	chr6	278276	51	INTRON	INTRON	ENPP3	ENSG00000154269.15	ENST00000427707.5:ENST00000414305.5:ENST00000357639.8:ENST00000358229.6:ENST00000423831.5:ENST00000470930.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	28	2	2.56868	3.35227	4.13586	0.031846	0.0256676	0.133676	0.13151
chr7	135562710	135562810	3428364	0	+	0.49	(0.476,0.515]	chr7	319623	41	INTRON	INTRON	NUP205	ENSG00000155561.15	ENST00000285968.11:ENST00000489493.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	28	2	2.56868	3.35227	4.13586	0.031846	0.0256676	0.133676	0.13151
chr19	799898	799989	6992119	0	+	0.351648	(0.35,0.378]	chr19	692236	6	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	PTBP1	ENSG00000011304.22	ENST00000635647.1:ENST00000627714.2:ENST00000676227.1:ENST00000677277.1:ENST00000592804.2:ENST00000349038.8:ENST00000590887.5:ENST00000586481.5:ENST00000586944.5:ENST00000356948.11:ENST00000394601.8:ENST00000677717.1:ENST00000589575.5:ENST00000587191.3:ENST00000679114.1:ENST00000350092.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	199	2	3.05493	3.35222	3.64951	1.05927e-4	4.36071e-6	0.00921279	0.00140234
chr17	40169854	40169946	6609436	0	+	0.467391	(0.44,0.476]	chr17	643719	2	SS5_PROX	SS5_PROX:INTRON	CASC3	ENSG00000108349.17	ENST00000264645.12:ENST00000394114.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	64	2	2.80275	3.352195	3.90164	0.0146513	1.25572e-4	0.0982604	0.00957656
chr19	8484108	8484207	7011171	0	+	0.464646	(0.44,0.476]	chr19	696206	5	INTRON	INTRON	HNRNPM	ENSG00000099783.12	ENST00000348943.7:ENST00000600092.5:ENST00000325495.9:ENST00000600806.5:ENST00000620401.4:ENST00000594907.5:ENST00000597270.1:ENST00000597081.1:ENST00000598603.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	64	2	2.80275	3.352195	3.90164	0.0146513	1.25572e-4	0.0982604	0.00957656
chr10	72594454	72594554	4646615	0	-	0.33	(0.32,0.35]	chr10	427462	273	INTRON	INTRON	MICU1	ENSG00000107745.20	ENST00000361114.10:ENST00000642044.1:ENST00000635239.1:ENST00000604238.2:ENST00000603011.5:ENST00000604025.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	31	2	2.64129	3.3521400000000003	4.06299	0.0559439	0.0222819	0.165463	0.124303
chr11	1304932	1305029	4890851	0	-	0.329897	(0.32,0.35]	chr11	458116	23	INTRON	INTRON	TOLLIP	ENSG00000078902.16	ENST00000317204.11:ENST00000525159.5:ENST00000263646.11:ENST00000530506.5:ENST00000527938.5:ENST00000530541.1:ENST00000527746.5:ENST00000527638.1:ENST00000532551.1:ENST00000530821.1:ENST00000527085.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	31	2	2.64129	3.3521400000000003	4.06299	0.0559439	0.0222819	0.165463	0.124303
chr14	58215978	58216076	5730690	0	+	0.346939	(0.32,0.35]	chr14	544031	3	INTRON	INTRON	ACTR10	ENSG00000131966.14	ENST00000545307.6:ENST00000555229.5:ENST00000254286.9:ENST00000555337.5:ENST00000556748.5:ENST00000554402.6:ENST00000556694.5:ENST00000557711.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	31	2	2.64129	3.3521400000000003	4.06299	0.0559439	0.0222819	0.165463	0.124303
chr7	96692325	96692423	3578400	0	-	0.326531	(0.32,0.35]	chr7	333199	30	INTRON	INTRON	SEM1	ENSG00000127922.10	ENST00000466986.5:ENST00000617133.4:ENST00000618105.4:ENST00000619259.4:ENST00000613919.4:ENST00000417009.5:ENST00000623693.3:ENST00000623498.3:ENST00000444799.5:ENST00000449279.5:ENST00000488005.5:ENST00000413065.5:ENST00000248566.4:ENST00000482389.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	31	2	2.64129	3.3521400000000003	4.06299	0.0559439	0.0222819	0.165463	0.124303
chr5	6603364	6603455	2566464	0	-	0.538462	(0.515,0.57]	chr5	245883	5	INTRON	INTRON	NSUN2	ENSG00000037474.15	ENST00000264670.11:ENST00000504374.5:ENST00000505892.5:ENST00000513888.5:ENST00000506139.5:ENST00000514127.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	54	2	3.25412	3.35213	3.45014	0.00224554	0.00116948	0.0435144	0.0312127
chr17	28942609	28942709	6746141	0	-	0.49	(0.476,0.515]	chr17	662925	145	INTRON	INTRON	PHF12	ENSG00000109118.14	ENST00000332830.9:ENST00000577226.5:ENST00000582436.5:ENST00000378879.7:ENST00000268756.7:ENST00000583524.5:ENST00000483934.5:ENST00000584685.1:ENST00000582853.5:ENST00000584236.1:ENST00000583747.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	98	2	2.75286	3.352045	3.95123	7.3224e-4	1.50038e-4	0.0246502	0.011202
chr9	124648707	124648807	4347989	0	-	0.3	(0.28,0.32]	chr9	399255	530	INTRON	INTRON	NR6A1	ENSG00000148200.17	ENST00000487099.7:ENST00000373584.7:ENST00000416460.6:ENST00000344523.8	protein_coding	protein_coding	protein_coding	protein_coding	2	50	2	2.09794	3.3520199999999996	4.6061	0.0340483	0.0102724	0.134863	0.089002
chr6	136632442	136632542	3234026	0	-	0.53	(0.515,0.57]	chr6	300622	91	INTRON	INTRON	MAP3K5	ENSG00000197442.10	ENST00000359015.5	protein_coding	protein_coding	protein_coding	protein_coding	2	36	2	1.7074	3.3518749999999997	4.99635	0.0779432	8.06602e-4	0.196685	0.0258804
chr11	66773311	66773411	4811633	0	+	0.41	(0.408,0.44]	chr11	447956	105	INTRON	INTRON	C11orf80	ENSG00000173715.18	ENST00000524551.5:ENST00000525908.6:ENST00000540737.7:ENST00000527634.5:ENST00000527368.5:ENST00000531400.6:ENST00000642265.1:ENST00000532565.6:ENST00000525449.6:ENST00000360962.10:ENST00000532727.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	28	2	2.58179	3.35183	4.12187	0.0354689	0.024638	0.137535	0.131869
chr15	41051576	41051673	6152571	0	-	0.42268	(0.408,0.44]	chr15	585325	11	INTRON	INTRON	INO80	ENSG00000128908.18	ENST00000648947.1:ENST00000401393.7:ENST00000558357.6:ENST00000559995.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	28	2	2.58179	3.35183	4.12187	0.0354689	0.024638	0.137535	0.131869
chr18	9549338	9549438	6945638	0	-	0.44	(0.408,0.44]	chr18	686937	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	PPP4R1	ENSG00000154845.16	ENST00000400555.7:ENST00000400556.8:ENST00000582594.5:ENST00000285124.12:ENST00000579609.5:ENST00000578329.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	28	2	2.58179	3.35183	4.12187	0.0354689	0.024638	0.137535	0.131869
chr22	26479281	26479381	7564088	0	-	0.42	(0.408,0.44]	chr22	773892	1	CDS_START	CDS_START:CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	HPS4	ENSG00000100099.21	ENST00000398145.7:ENST00000466781.5:ENST00000439453.5:ENST00000336873.9:ENST00000402105.7:ENST00000464362.5:ENST00000429411.5:ENST00000496385.5:ENST00000422379.2:ENST00000481910.1:ENST00000483631.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	28	2	2.58179	3.35183	4.12187	0.0354689	0.024638	0.137535	0.131869
chr8	54021225	54021325	3953298	0	-	0.41	(0.408,0.44]	chr8	362573	3	SS5_PROX	SS5_PROX:INTRON	TCEA1	ENSG00000187735.15	ENST00000396401.7:ENST00000521604.7:ENST00000521086.6:ENST00000522635.5:ENST00000522397.5:ENST00000640382.1:ENST00000640041.1:ENST00000520534.5:ENST00000518310.5:ENST00000517351.5:ENST00000521836.1:ENST00000518784.5:ENST00000519704.1:ENST00000638322.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	28	2	2.58179	3.35183	4.12187	0.0354689	0.024638	0.137535	0.131869
chr9	137695009	137695109	4224246	0	+	0.44	(0.408,0.44]	chr9	388206	93	INTRON	INTRON	EHMT1	ENSG00000181090.21	ENST00000462484.5:ENST00000371394.6:ENST00000630754.2:ENST00000460843.6:ENST00000626216.2:ENST00000629335.2:ENST00000637335.1:ENST00000636376.1:ENST00000637655.1:ENST00000636027.1:ENST00000492232.5:ENST00000460486.3:ENST00000636081.1:ENST00000637161.1:ENST00000629417.1:ENST00000637662.1:ENST00000636186.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	28	2	2.58179	3.35183	4.12187	0.0354689	0.024638	0.137535	0.131869
chr9	137104131	137104229	4222829	0	+	0.489796	(0.476,0.515]	chr9	387932	26	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	MAN1B1	ENSG00000177239.16	ENST00000682881.1:ENST00000683324.1:ENST00000684138.1:ENST00000683135.1:ENST00000542372.2:ENST00000371587.9:ENST00000684366.1:ENST00000684229.1:ENST00000683355.1:ENST00000682117.1:ENST00000683475.1:ENST00000682425.1:ENST00000684645.1:ENST00000683979.1:ENST00000371589.9:ENST00000535144.6:ENST00000684272.1:ENST00000475449.7:ENST00000684759.1:ENST00000545539.6:ENST00000684144.1:ENST00000683987.1:ENST00000682212.1:ENST00000544448.6:ENST00000684297.1:ENST00000474902.5:ENST00000682964.1:ENST00000535028.6:ENST00000536349.6:ENST00000684336.1:ENST00000540391.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	62	2	3.2463	3.351705	3.45711	0.00262374	0.00140905	0.0470772	0.0340865
chr1	148671366	148671466	547070	0	-	0.32	(0.28,0.32]	chr1	64235	309	INTRON	INTRON	NBPF14	ENSG00000270629.7	ENST00000606877.2	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	2.46018	3.3516899999999996	4.2432	0.0479043	0.0375904	0.156054	0.153019
chr1	154241012	154241112	227736	0	+	0.3	(0.28,0.32]	chr1	26270	1	SS3_PROX	SS3_PROX:INTRON	UBAP2L	ENSG00000143569.19	ENST00000343815.10:ENST00000271877.11:ENST00000613315.4:ENST00000412596.5:ENST00000368504.5:ENST00000428931.6:ENST00000437652.5:ENST00000361546.6	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	2.46018	3.3516899999999996	4.2432	0.0479043	0.0375904	0.156054	0.153019
chr10	27182980	27183080	4413309	0	+	0.3	(0.28,0.32]	chr10	407031	10	INTRON	INTRON	MASTL	ENSG00000120539.15	ENST00000375946.8:ENST00000375940.9:ENST00000342386.10:ENST00000477034.2	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	2.46018	3.3516899999999996	4.2432	0.0479043	0.0375904	0.156054	0.153019
chr16	10457219	10457319	6286998	0	+	0.32	(0.28,0.32]	chr16	602011	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	ATF7IP2	ENSG00000166669.14	ENST00000396559.5:ENST00000396560.6:ENST00000543967.5:ENST00000562102.6:ENST00000535850.5:ENST00000568027.5:ENST00000324570.9:ENST00000356427.2:ENST00000565616.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	32	2	2.46018	3.3516899999999996	4.2432	0.0479043	0.0375904	0.156054	0.153019
chr17	32151901	32152001	6596913	0	+	0.29	(0.28,0.32]	chr17	641728	88	INTRON	INTRON	RHOT1	ENSG00000126858.19	ENST00000333942.10:ENST00000358365.7:ENST00000583994.5:ENST00000545287.7:ENST00000354266.7:ENST00000581031.5:ENST00000581094.5:ENST00000578205.5:ENST00000580976.1:ENST00000394692.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	32	2	2.46018	3.3516899999999996	4.2432	0.0479043	0.0375904	0.156054	0.153019
chr18	655287	655383	6939295	0	-	0.3125	(0.28,0.32]	chr18	686351	7	INTRON	INTRON	TYMSOS:ENSG00000263727	ENSG00000176912.6:ENSG00000263727.1	ENST00000585033.1:ENST00000323813.4:ENST00000688530.1:ENST00000688642.1:ENST00000584679.1	lncRNA	lncRNA	lncRNA	lncRNA	1	32	2	2.46018	3.3516899999999996	4.2432	0.0479043	0.0375904	0.156054	0.153019
chr19	17177200	17177296	7028975	0	+	0.3125	(0.28,0.32]	chr19	699658	11	INTRON	INTRON	MYO9B	ENSG00000099331.14	ENST00000682292.1:ENST00000595618.5:ENST00000594824.5:ENST00000397274.6:ENST00000595641.5:ENST00000594971.5:ENST00000598101.1:ENST00000602177.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	32	2	2.46018	3.3516899999999996	4.2432	0.0479043	0.0375904	0.156054	0.153019
chr2	23830622	23830720	1079971	0	-	0.306122	(0.28,0.32]	chr2	115282	13	INTRON	INTRON	ATAD2B	ENSG00000119778.15	ENST00000238789.10:ENST00000474583.5:ENST00000458510.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	32	2	2.46018	3.3516899999999996	4.2432	0.0479043	0.0375904	0.156054	0.153019
chr2	43894998	43895090	1109543	0	-	0.293478	(0.28,0.32]	chr2	118939	5	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	LRPPRC	ENSG00000138095.20	ENST00000260665.12:ENST00000682612.1:ENST00000684454.1:ENST00000682308.1:ENST00000682154.1:ENST00000683459.1:ENST00000683623.1:ENST00000683002.1:ENST00000683125.1:ENST00000683994.1:ENST00000684619.1:ENST00000683833.1:ENST00000682546.1:ENST00000683080.1:ENST00000681993.1:ENST00000682585.1:ENST00000683220.1:ENST00000683796.1:ENST00000682607.1:ENST00000683590.1:ENST00000684306.1:ENST00000683213.1:ENST00000683409.1:ENST00000684418.1:ENST00000682779.1:ENST00000684433.1:ENST00000682885.1:ENST00000419884.6:ENST00000684743.1:ENST00000463456.5:ENST00000683346.1:ENST00000683072.1:ENST00000682303.1:ENST00000683329.1:ENST00000683096.1:ENST00000682933.1:ENST00000684383.1:ENST00000682480.1:ENST00000684290.1:ENST00000682434.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	32	2	2.46018	3.3516899999999996	4.2432	0.0479043	0.0375904	0.156054	0.153019
chr2	58085938	58086038	784361	0	+	0.29	(0.28,0.32]	chr2	88195	2	SS3_PROX	SS3_PROX:INTRON	VRK2	ENSG00000028116.18	ENST00000648897.1:ENST00000417641.6:ENST00000435505.6:ENST00000412104.6:ENST00000432057.2:ENST00000440705.6:ENST00000340157.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	32	2	2.46018	3.3516899999999996	4.2432	0.0479043	0.0375904	0.156054	0.153019
chr2	187017862	187017962	944159	0	+	0.32	(0.28,0.32]	chr2	103476	141	INTRON	INTRON	CALCRL-AS1	ENSG00000224063.6	ENST00000453517.5:ENST00000412276.6	lncRNA	lncRNA	lncRNA	lncRNA	1	32	2	2.46018	3.3516899999999996	4.2432	0.0479043	0.0375904	0.156054	0.153019
chr21	5562028	5562128	7364216	0	+	0.29	(0.28,0.32]	chr21	751617	78	INTRON	INTRON	ENSG00000274333	ENSG00000274333.4	ENST00000619252.4:ENST00000623449.3:ENST00000624627.3:ENST00000623436.3:ENST00000624368.3:ENST00000623914.3:ENST00000624516.1:ENST00000624412.3:ENST00000622939.3	lncRNA	lncRNA	lncRNA	lncRNA	1	32	2	2.46018	3.3516899999999996	4.2432	0.0479043	0.0375904	0.156054	0.153019
chr7	135485787	135485887	3648718	0	-	0.3	(0.28,0.32]	chr7	339187	470	INTRON	INTRON	CNOT4	ENSG00000080802.20	ENST00000541284.6:ENST00000451834.5:ENST00000423368.6:ENST00000361528.8:ENST00000428680.6:ENST00000315544.6:ENST00000491203.5:ENST00000498534.5:ENST00000465721.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	32	2	2.46018	3.3516899999999996	4.2432	0.0479043	0.0375904	0.156054	0.153019
chr11	46561343	46561443	4946933	0	-	0.35	(0.32,0.35]	chr11	463525	119	INTRON	INTRON	AMBRA1	ENSG00000110497.15	ENST00000683756.1:ENST00000534300.5:ENST00000533727.5:ENST00000314845.7:ENST00000458649.6:ENST00000528950.1:ENST00000531542.1:ENST00000526606.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	117	2	3.15377	3.351515	3.54926	0.00133843	1.07848e-4	0.0335491	0.00878438
chr1	27469600	27469700	406559	0	-	0.4	(0.378,0.408]	chr1	48986	403	INTRON	INTRON	WASF2	ENSG00000158195.11	ENST00000618852.5:ENST00000536657.1	protein_coding	protein_coding	protein_coding	protein_coding	3	86	2	2.83344	3.3514749999999998	3.86951	0.00244811	1.55755e-4	0.0445777	0.0106835
chr1	204553156	204553255	297800	0	+	0.40404	(0.378,0.408]	chr1	34331	36	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	MDM4	ENSG00000198625.14	ENST00000367183.7:ENST00000391947.6:ENST00000454264.6:ENST00000612738.4:ENST00000614459.4:ENST00000616250.4:ENST00000367182.8:ENST00000463049.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	23	595	2	3.09182	3.3513849999999996	3.61095	2.18265e-6	1.02791e-8	0.00102711	3.51053e-5
chr15	92892769	92892868	6103607	0	+	0.292929	(0.28,0.32]	chr15	581375	3	INTRON	INTRON	CHASERR:ENSG00000279765	ENSG00000272888.8:ENSG00000279765.3	ENST00000653163.1:ENST00000557682.6:ENST00000556895.5:ENST00000629685.2:ENST00000554133.5:ENST00000630790.1:ENST00000555520.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	8	192	2	2.63349	3.35136	4.06923	1.83227e-4	1.41016e-4	0.0122816	0.0102551
chr5	133957190	133957290	2725603	0	-	0.52	(0.515,0.57]	chr5	256400	2	SS3_PROX	SS3_PROX:INTRON	C5orf15	ENSG00000113583.8	ENST00000231512.5	protein_coding	protein_coding	protein_coding	protein_coding	4	51	2	1.77795	3.35134	4.92473	0.0222234	0.00108255	0.116128	0.0300133
chr1	15695789	15695889	34127	0	+	0.58	(0.57,1]	chr1	4144	108	INTRON	INTRON	PLEKHM2	ENSG00000116786.13	ENST00000375799.8:ENST00000375793.2:ENST00000462455.1:ENST00000642363.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	19	2	2.53383	3.35132	4.16881	0.02547	0.00574776	0.12011	0.0681402
chr12	120892687	120892787	5435791	0	-	0.58	(0.57,1]	chr12	519663	572	INTRON	INTRON	SPPL3	ENSG00000157837.16	ENST00000353487.7:ENST00000536996.5:ENST00000543608.5:ENST00000543854.5	protein_coding	protein_coding	protein_coding	protein_coding	1	19	2	2.53383	3.35132	4.16881	0.02547	0.00574776	0.12011	0.0681402
chr18	47150131	47150201	6967216	0	-	0.742857	(0.57,1]	chr18	689617	2	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	HDHD2:ENSG00000267228	ENSG00000167220.12:ENSG00000267228.7	ENST00000588183.5:ENST00000300605.11:ENST00000602459.6:ENST00000587841.5:ENST00000590815.5:ENST00000591480.5:ENST00000586546.5:ENST00000590481.5:ENST00000588940.5:ENST00000587388.5:ENST00000591268.1:ENST00000592591.1:ENST00000591671.1:ENST00000588705.1:ENST00000602926.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	19	2	2.53383	3.35132	4.16881	0.02547	0.00574776	0.12011	0.0681402
chr19	4440064	4440163	7002154	0	+	0.454545	(0.44,0.476]	chr19	694580	62	INTRON	INTRON	CHAF1A	ENSG00000167670.16	ENST00000301280.10	protein_coding	protein_coding	protein_coding	protein_coding	2	41	2	2.08277	3.351155	4.61954	0.0309998	0.00506805	0.13151	0.0646039
chr7	105299673	105299772	3603012	0	-	0.464646	(0.44,0.476]	chr7	336154	10	INTRON	INTRON	SRPK2	ENSG00000135250.17	ENST00000393651.8:ENST00000482897.5:ENST00000460391.5:ENST00000462282.5:ENST00000465112.5:ENST00000482862.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	41	2	2.08277	3.351155	4.61954	0.0309998	0.00506805	0.13151	0.0646039
chrX	53414015	53414096	7820110	0	-	0.45679	(0.44,0.476]	chrX	797760	2	INTRON	INTRON	SMC1A	ENSG00000072501.19	ENST00000375340.10:ENST00000322213.9:ENST00000675504.1:ENST00000674590.1:ENST00000675065.1:ENST00000463684.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	41	2	2.08277	3.351155	4.61954	0.0309998	0.00506805	0.13151	0.0646039
chr14	45207934	45208031	5884828	0	-	0.402062	(0.378,0.408]	chr14	558350	14	INTRON	INTRON	MIS18BP1	ENSG00000129534.14	ENST00000310806.9	protein_coding	protein_coding	protein_coding	protein_coding	3	46	2	1.89251	3.351095	4.80968	0.0251428	0.00679828	0.133404	0.0711802
chr17	62488195	62488295	6652972	0	+	0.4	(0.378,0.408]	chr17	649307	17	INTRON	INTRON	TLK2	ENSG00000146872.19	ENST00000582809.5:ENST00000684213.1:ENST00000583843.5:ENST00000579450.5:ENST00000577616.1:ENST00000582195.6:ENST00000682085.1:ENST00000580705.5:ENST00000346027.10:ENST00000326270.13:ENST00000682203.1:ENST00000343388.11:ENST00000683536.1:ENST00000684440.1:ENST00000684772.1:ENST00000682274.1:ENST00000682827.1:ENST00000583690.6:ENST00000682075.1:ENST00000683104.1:ENST00000684012.1:ENST00000581041.5:ENST00000684553.1:ENST00000683737.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	46	2	1.89251	3.351095	4.80968	0.0251428	0.00679828	0.133404	0.0711802
chr7	5204640	5204739	3272106	0	+	0.424242	(0.408,0.44]	chr7	304097	46	INTRON	INTRON	WIPI2	ENSG00000157954.15	ENST00000401525.7:ENST00000288828.9:ENST00000404704.7:ENST00000466014.5:ENST00000485854.5:ENST00000382384.6:ENST00000496867.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	62	2	3.10641	3.351025	3.59564	0.00555646	5.73354e-4	0.0648867	0.0217398
chr2	197855305	197855405	969609	0	+	0.42	(0.408,0.44]	chr2	104858	446	INTRON	INTRON	PLCL1	ENSG00000115896.16	ENST00000428675.6:ENST00000435320.1:ENST00000487695.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	62	2	3.28852	3.3508750000000003	3.41323	0.00287185	0.00129989	0.0474836	0.0333764
chr1	23320930	23321027	399353	0	-	0.515464	(0.515,0.57]	chr1	47853	19	INTRON	INTRON	HNRNPR	ENSG00000125944.21	ENST00000478691.5:ENST00000302271.11:ENST00000374616.7:ENST00000374612.5:ENST00000675048.1:ENST00000606561.5:ENST00000427764.3:ENST00000463552.5:ENST00000470941.5:ENST00000476451.2	protein_coding	protein_coding	protein_coding	protein_coding	5	99	2	2.31394	3.35077	4.3876	0.00231716	8.75303e-6	0.0442594	0.00227522
chr9	37125712	37125811	4117707	0	+	0.343434	(0.32,0.35]	chr9	375364	37	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000322831.6:ENST00000461038.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	57	2	1.68188	3.350525	5.01917	0.031521	0.0055659	0.144381	0.0648867
chr16	23950122	23950222	6324902	0	+	0.42	(0.408,0.44]	chr16	605701	564	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000498739.1	protein_coding	protein_coding	protein_coding	protein_coding	6	153	2	2.8719	3.35047	3.82904	1.3686e-4	1.66007e-5	0.0100759	0.00326835
chr10	26800338	26800438	4583893	0	-	0.47	(0.44,0.476]	chr10	422397	227	INTRON	INTRON	ABI1	ENSG00000136754.18	ENST00000376138.7:ENST00000376166.5:ENST00000376160.5:ENST00000376139.6:ENST00000376142.6:ENST00000359188.8:ENST00000376170.8:ENST00000536334.5:ENST00000490841.6:ENST00000376137.8:ENST00000376140.4:ENST00000346832.10:ENST00000473481.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	40	2	1.77101	3.350345	4.92968	0.0693975	0.00171443	0.184298	0.0381936
chr11	125612019	125612091	4882828	0	+	0.444444	(0.44,0.476]	chr11	456500	1	INTRON	INTRON	STT3A	ENSG00000134910.14	ENST00000529196.5:ENST00000392708.9:ENST00000649491.1:ENST00000531491.5:ENST00000526726.1:ENST00000524639.5:ENST00000531599.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	40	2	1.77101	3.350345	4.92968	0.0693975	0.00171443	0.184298	0.0381936
chr20	38544457	38544556	7270622	0	+	0.474747	(0.44,0.476]	chr20	738856	29	INTRON	INTRON	RALGAPB	ENSG00000170471.15	ENST00000397042.7:ENST00000262879.11:ENST00000397040.5:ENST00000438490.2:ENST00000461423.1:ENST00000632792.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	40	2	1.77101	3.350345	4.92968	0.0693975	0.00171443	0.184298	0.0381936
chr17	30861311	30861411	6590726	0	+	0.28	[0,0.28]	chr17	640972	3	INTRON	INTRON	ATAD5	ENSG00000176208.9	ENST00000321990.5:ENST00000578295.5:ENST00000585133.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:non_stop_decay	2	48	2	2.15457	3.3503350000000003	4.5461	0.0365918	0.0269306	0.138959	0.135288
chr4	67508513	67508613	2153135	0	-	0.22	[0,0.28]	chr4	211955	3	SS5_PROX	SS5_PROX:INTRON	CENPC	ENSG00000145241.11	ENST00000273853.11:ENST00000513216.5:ENST00000506882.5:ENST00000510189.5:ENST00000507196.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	48	2	2.15457	3.3503350000000003	4.5461	0.0365918	0.0269306	0.138959	0.135288
chr1	213141179	213141279	311606	0	+	0.4	(0.378,0.408]	chr1	35945	109	INTRON	INTRON	RPS6KC1	ENSG00000136643.12	ENST00000615329.4:ENST00000543354.5:ENST00000614059.4:ENST00000543470.5:ENST00000366960.8:ENST00000366959.4:ENST00000490299.5:ENST00000468069.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	29	2	2.71183	3.35025	3.98867	0.0507	0.0170789	0.156383	0.110899
chr1	223806345	223806445	642974	0	-	0.4	(0.378,0.408]	chr1	75926	1	SS5_PROX	SS5_PROX:INTRON	TP53BP2	ENSG00000143514.17	ENST00000343537.12:ENST00000391878.6:ENST00000494100.1:ENST00000496282.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	29	2	2.71183	3.35025	3.98867	0.0507	0.0170789	0.156383	0.110899
chr1	227191288	227191388	650443	0	-	0.4	(0.378,0.408]	chr1	77078	303	INTRON	INTRON	CDC42BPA	ENSG00000143776.20	ENST00000366766.8:ENST00000366769.7:ENST00000334218.9:ENST00000366767.7:ENST00000366764.8	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	2.71183	3.35025	3.98867	0.0507	0.0170789	0.156383	0.110899
chr14	20992622	20992720	5656067	0	+	0.397959	(0.378,0.408]	chr14	539203	1	EXON_MRNA	EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	METTL17	ENSG00000165792.18	ENST00000339374.11:ENST00000382985.8:ENST00000554588.5:ENST00000554985.5:ENST00000556670.6:ENST00000555533.6:ENST00000555640.6:ENST00000553564.5:ENST00000557550.6:ENST00000554751.5:ENST00000553441.5:ENST00000553536.5:ENST00000555670.1:ENST00000555902.6:ENST00000555390.6:ENST00000554354.1:ENST00000557279.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	29	2	2.71183	3.35025	3.98867	0.0507	0.0170789	0.156383	0.110899
chr16	8915907	8916001	6442258	0	-	0.404255	(0.378,0.408]	chr16	620527	4	SS3_PROX	SS3_PROX:INTRON	USP7	ENSG00000187555.16	ENST00000673704.1:ENST00000344836.9:ENST00000563961.5:ENST00000381886.8:ENST00000565455.5:ENST00000563085.5:ENST00000542333.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	29	2	2.71183	3.35025	3.98867	0.0507	0.0170789	0.156383	0.110899
chr2	159524452	159524552	1251611	0	-	0.38	(0.378,0.408]	chr2	132728	79	INTRON	INTRON	BAZ2B	ENSG00000123636.19	ENST00000392782.5:ENST00000392783.7:ENST00000467184.5:ENST00000541068.6:ENST00000437839.5:ENST00000483316.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	29	2	2.71183	3.35025	3.98867	0.0507	0.0170789	0.156383	0.110899
chr5	6738382	6738482	2316086	0	+	0.4	(0.378,0.408]	chr5	224275	3	SS3_PROX	SS3_PROX:INTRON	TENT4A	ENSG00000112941.14	ENST00000230859.8:ENST00000631941.2	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	2.71183	3.35025	3.98867	0.0507	0.0170789	0.156383	0.110899
chrX	123969895	123969995	7716834	0	+	0.4	(0.378,0.408]	chrX	789462	61	INTRON	INTRON	STAG2	ENSG00000101972.20	ENST00000394477.5:ENST00000218089.13:ENST00000455404.5:ENST00000483575.5:ENST00000687810.1:ENST00000687071.1:ENST00000469481.1:ENST00000458700.5:ENST00000371160.5:ENST00000435103.5:ENST00000687852.1:ENST00000371145.8:ENST00000692982.1:ENST00000371157.7:ENST00000691035.1:ENST00000686802.1:ENST00000691383.1:ENST00000686127.1:ENST00000371144.7:ENST00000458176.5:ENST00000466748.5:ENST00000471107.1:ENST00000428941.5:ENST00000435215.5:ENST00000394478.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	29	2	2.71183	3.35025	3.98867	0.0507	0.0170789	0.156383	0.110899
chr1	11967888	11967987	26342	0	+	0.323232	(0.32,0.35]	chr1	3040	4	INTRON	INTRON	PLOD1	ENSG00000083444.17	ENST00000196061.5:ENST00000491536.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	45	2	1.83416	3.35019	4.86622	0.0631198	0.00354075	0.176946	0.0546236
chr3	19969747	19969847	1376262	0	+	0.38	(0.378,0.408]	chr3	145051	165	INTRON	INTRON	RAB5A	ENSG00000144566.11	ENST00000273047.9:ENST00000412966.5:ENST00000446547.5:ENST00000422242.1:ENST00000469122.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	64	2	3.05502	3.350155	3.64529	0.00689519	4.71767e-4	0.0717484	0.0196294
chr8	37866371	37866470	3935607	0	-	0.40404	(0.378,0.408]	chr8	360553	29	INTRON	INTRON	RAB11FIP1	ENSG00000156675.16	ENST00000330843.9:ENST00000287263.8:ENST00000522727.5:ENST00000523182.5:ENST00000522774.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	64	2	3.05502	3.350155	3.64529	0.00689519	4.71767e-4	0.0717484	0.0196294
chr7	107516837	107516937	3612554	0	-	0.39	(0.378,0.408]	chr7	336698	360	INTRON	INTRON	COG5	ENSG00000164597.15	ENST00000297135.9:ENST00000347053.8:ENST00000393603.7:ENST00000475638.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	54	2	1.89052	3.3501000000000003	4.80968	0.0148147	0.00679828	0.106702	0.0711802
chr2	111247266	111247363	1209310	0	-	0.319588	(0.28,0.32]	chr2	128824	18	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	MIR4435-2HG	ENSG00000172965.17	ENST00000645030.2:ENST00000642191.1:ENST00000673798.1:ENST00000645051.2:ENST00000673649.1:ENST00000673962.1:ENST00000674132.1:ENST00000669658.1:ENST00000669917.1:ENST00000661559.1:ENST00000653687.1:ENST00000667670.1:ENST00000609220.2:ENST00000656760.1:ENST00000609902.6:ENST00000666683.1:ENST00000674070.1:ENST00000662335.1:ENST00000664422.1:ENST00000673775.1:ENST00000662889.1:ENST00000665096.1:ENST00000674092.1:ENST00000673958.1:ENST00000673770.1:ENST00000673961.1:ENST00000658936.1:ENST00000662635.1:ENST00000666204.1:ENST00000659458.1:ENST00000664443.1:ENST00000670295.1:ENST00000661655.1:ENST00000666390.1:ENST00000659079.1:ENST00000660442.1:ENST00000664009.1:ENST00000439362.6:ENST00000654473.1:ENST00000664999.1:ENST00000673728.1:ENST00000659791.1:ENST00000666144.1:ENST00000659933.1:ENST00000670715.1:ENST00000656303.1:ENST00000666367.1:ENST00000666652.1:ENST00000669050.1:ENST00000667218.1:ENST00000656067.1:ENST00000653568.1:ENST00000643013.1:ENST00000673866.1:ENST00000673700.1:ENST00000443467.6:ENST00000451884.6:ENST00000669875.1:ENST00000673653.1:ENST00000673988.1:ENST00000661945.1:ENST00000669515.1:ENST00000431385.6:ENST00000655573.1:ENST00000656416.1:ENST00000662384.1	lncRNA	lncRNA	lncRNA	lncRNA	1	37	2	2.57195	3.35001	4.12807	0.0338135	0.0331711	0.146709	0.133994
chr17	30722386	30722485	6589707	0	+	0.555556	(0.515,0.57]	chr17	640838	122	INTRON	INTRON	SUZ12P1	ENSG00000264538.7	ENST00000578070.5:ENST00000579526.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	4	85	2	2.92506	3.3499800000000004	3.7749	2.59829e-4	2.50659e-4	0.0148796	0.0140705
chr21	44962954	44963053	7417691	0	+	0.323232	(0.32,0.35]	chr21	756231	24	INTRON	INTRON	SLX9	ENSG00000160256.13	ENST00000397826.7:ENST00000458015.1:ENST00000291634.11:ENST00000479127.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	98	2	3.04809	3.3499800000000004	3.65187	0.00120984	5.49434e-4	0.0317954	0.0213049
chr2	107705917	107706016	1205608	0	-	0.222222	[0,0.28]	chr2	128526	22	INTRON	INTRON	LINC01885:ENSG00000286769	ENSG00000237880.2:ENSG00000286769.1	ENST00000654481.1:ENST00000669817.1	lncRNA	lncRNA	lncRNA	lncRNA	6	222	2	2.79094	3.3499049999999997	3.90887	8.72385e-4	1.58662e-5	0.0270796	0.00300937
chr20	31758082	31758180	7253850	0	+	0.489796	(0.476,0.515]	chr20	736739	1	INTRON	INTRON	TPX2	ENSG00000088325.16	ENST00000340513.4:ENST00000300403.11	protein_coding	protein_coding	protein_coding	protein_coding	3	84	2	2.49941	3.34977	4.20013	0.00811651	2.43832e-5	0.0766625	0.00386122
chr2	24527488	24527588	709619	0	+	0.29	(0.28,0.32]	chr2	82200	349	INTRON	INTRON	NCOA1	ENSG00000084676.16	ENST00000348332.8:ENST00000496333.5:ENST00000406961.5:ENST00000469850.5:ENST00000405141.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	43	2	1.96475	3.3497450000000004	4.73474	0.0428385	0.0162835	0.162255	0.101453
chr5	111500821	111500918	2702679	0	-	0.319588	(0.28,0.32]	chr5	254392	8	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	STARD4	ENSG00000164211.13	ENST00000296632.8:ENST00000512160.5:ENST00000511137.5:ENST00000502931.5:ENST00000505803.5:ENST00000502322.5:ENST00000509887.5:ENST00000511569.5:ENST00000511436.5:ENST00000510346.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	43	2	1.96475	3.3497450000000004	4.73474	0.0428385	0.0162835	0.162255	0.101453
chr6	170539824	170539924	3267541	0	-	0.29	(0.28,0.32]	chr6	303367	21	INTRON	INTRON	PSMB1	ENSG00000008018.9	ENST00000262193.7:ENST00000462957.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	43	2	1.96475	3.3497450000000004	4.73474	0.0428385	0.0162835	0.162255	0.101453
chr16	24550261	24550358	6327763	0	+	0.340206	(0.32,0.35]	chr16	605836	9	INTRON	INTRON	RBBP6	ENSG00000122257.20	ENST00000564314.5:ENST00000567686.5:ENST00000568015.5:ENST00000319715.10:ENST00000381039.7:ENST00000646282.1:ENST00000348022.6	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	2.23182	3.3497	4.46758	0.068598	0.0119306	0.184298	0.0962115
chr2	121410001	121410092	1219958	0	-	0.32967	(0.32,0.35]	chr2	129887	6	INTRON	INTRON	CLASP1	ENSG00000074054.20	ENST00000263710.8:ENST00000397587.7:ENST00000541377.5:ENST00000409078.8:ENST00000455322.6:ENST00000452274.6:ENST00000463621.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	33	2	2.23182	3.3497	4.46758	0.068598	0.0119306	0.184298	0.0962115
chr2	74166813	74166913	1157009	0	-	0.3	(0.28,0.32]	chr2	123709	4	SS5_PROX	SS5_PROX:INTRON	MOB1A	ENSG00000114978.18	ENST00000396049.5:ENST00000497054.5:ENST00000495286.5:ENST00000463975.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	44	2	2.1895	3.349655	4.50981	0.0275554	0.0227063	0.124921	0.123904
chr4	51907319	51907419	1959212	0	+	0.3	(0.28,0.32]	chr4	196355	16	INTRON	INTRON	DCUN1D4	ENSG00000109184.15	ENST00000509376.5:ENST00000381441.7:ENST00000334635.10:ENST00000507741.5:ENST00000477560.5:ENST00000451288.6:ENST00000510587.5:ENST00000507659.5:ENST00000505634.5:ENST00000510808.1:ENST00000512199.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	44	2	2.1895	3.349655	4.50981	0.0275554	0.0227063	0.124921	0.123904
chr17	64534109	64534204	6662194	0	+	0.357895	(0.35,0.378]	chr17	650286	2	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	CEP95	ENSG00000258890.8	ENST00000556440.7:ENST00000553956.6:ENST00000582698.5:ENST00000580285.1:ENST00000581885.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	32	2	2.39939	3.3495	4.29961	0.0458078	0.0158483	0.149888	0.109464
chr3	15216336	15216434	1372967	0	+	0.377551	(0.35,0.378]	chr3	144715	38	INTRON	INTRON	CAPN7	ENSG00000131375.10	ENST00000418994.1:ENST00000457023.1:ENST00000253693.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	32	2	2.39939	3.3495	4.29961	0.0458078	0.0158483	0.149888	0.109464
chr6	68889468	68889568	2888861	0	+	0.37	(0.35,0.378]	chr6	273730	2497	INTRON	INTRON	ADGRB3	ENSG00000135298.15	ENST00000370598.6:ENST00000684661.1:ENST00000546190.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	32	2	2.39939	3.3495	4.29961	0.0458078	0.0158483	0.149888	0.109464
chr11	103079608	103079708	5026449	0	-	0.5	(0.476,0.515]	chr11	473936	3	SS5_PROX	SS5_PROX:INTRON	DCUN1D5	ENSG00000137692.12	ENST00000260247.10:ENST00000527260.5:ENST00000531571.5:ENST00000531543.1:ENST00000529281.5:ENST00000529294.5:ENST00000527576.5:ENST00000527779.1:ENST00000583974.1:ENST00000525420.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	84	2	3.11647	3.34945	3.58243	6.41912e-4	6.18479e-4	0.0231685	0.0223951
chr9	131133209	131133309	4215700	0	+	0.34	(0.32,0.35]	chr9	386534	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	NUP214	ENSG00000126883.19	ENST00000695497.1:ENST00000695498.1:ENST00000695496.1:ENST00000695495.1:ENST00000695494.1:ENST00000695493.1:ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000525561.2:ENST00000651022.1:ENST00000695499.1:ENST00000530843.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	41	2	2.07985	3.3493700000000004	4.61889	0.0303092	0.0166646	0.143025	0.102621
chr8	30709121	30709217	3932559	0	-	0.4375	(0.408,0.44]	chr8	360257	6	INTRON	INTRON	GSR	ENSG00000104687.14	ENST00000221130.11:ENST00000643653.1:ENST00000643525.1:ENST00000537535.5:ENST00000541648.5:ENST00000546342.5:ENST00000523295.5:ENST00000521479.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	113	2	2.71189	3.349345	3.9868	3.3885e-4	1.3698e-4	0.0163824	0.0106749
chr10	35360969	35361069	4424747	0	+	0.49	(0.476,0.515]	chr10	407899	234	INTRON	INTRON	CCNY	ENSG00000108100.18	ENST00000374706.5:ENST00000490012.6:ENST00000493157.6:ENST00000374704.8:ENST00000265375.13:ENST00000339497.7:ENST00000492478.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	100	2	2.31529	3.34934	4.38339	0.00614783	8.08784e-6	0.0676501	0.00204092
chr17	78218270	78218369	6682212	0	+	0.343434	(0.32,0.35]	chr17	652756	11	INTRON	INTRON	BIRC5	ENSG00000089685.15	ENST00000301633.8:ENST00000350051.8:ENST00000590925.6:ENST00000374948.6:ENST00000592734.5:ENST00000592115.5:ENST00000586192.5:ENST00000587746.5:ENST00000591800.1:ENST00000589892.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	71	2	3.24087	3.349295	3.45772	0.00420518	0.00128487	0.0572185	0.0333518
chr1	167994724	167994823	249076	0	+	0.252525	[0,0.28]	chr1	29582	9	INTRON	INTRON	DCAF6	ENSG00000143164.16	ENST00000432587.6:ENST00000367843.7:ENST00000470721.5:ENST00000367840.4:ENST00000312263.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	118	2	3.25086	3.34926	3.44766	0.00294011	4.54073e-4	0.0483547	0.0192381
chr1	183518020	183518120	273974	0	+	0.55	(0.515,0.57]	chr1	32054	2	SS5_PROX	SS5_PROX:INTRON	SMG7	ENSG00000116698.22	ENST00000440812.7:ENST00000367537.7:ENST00000688051.1:ENST00000685780.1:ENST00000508461.5:ENST00000347615.6:ENST00000419169.5:ENST00000444547.6:ENST00000507469.5:ENST00000515829.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	34	2	2.1885	3.3492499999999996	4.51	0.0202537	0.00809449	0.121364	0.0766625
chr17	47610777	47610876	6622417	0	+	0.252525	[0,0.28]	chr17	645952	49	INTRON	INTRON	NPEPPS	ENSG00000141279.17	ENST00000677710.1:ENST00000530173.6:ENST00000677226.1:ENST00000322157.9:ENST00000678461.1:ENST00000677120.1:ENST00000678909.1:ENST00000678496.1:ENST00000678262.1:ENST00000677370.1:ENST00000677664.1:ENST00000676492.1:ENST00000530514.6:ENST00000678902.1:ENST00000525048.5:ENST00000531486.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	47	2	2.00649	3.3491999999999997	4.69191	0.040391	0.0269474	0.161534	0.123442
chr2	235521425	235521525	1041609	0	+	0.28	[0,0.28]	chr2	111217	262	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	47	2	2.00649	3.3491999999999997	4.69191	0.040391	0.0269474	0.161534	0.123442
chr6	106276367	106276467	3177666	0	-	0.61	(0.57,1]	chr6	296175	278	INTRON	INTRON	ATG5	ENSG00000057663.16	ENST00000636437.1:ENST00000636335.1:ENST00000369070.5:ENST00000369076.8:ENST00000635758.2:ENST00000360666.6:ENST00000343245.7:ENST00000646025.1:ENST00000613993.1:ENST00000476518.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	25	2	2.02391	3.34917	4.67443	0.0339274	8.07515e-4	0.134508	0.0258804
chr17	58504588	58504678	6800502	0	-	0.4	(0.378,0.408]	chr17	671587	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MTMR4	ENSG00000108389.10	ENST00000579925.5:ENST00000323456.9:ENST00000682306.1	protein_coding	protein_coding	protein_coding	protein_coding	5	117	2	2.78965	3.3491400000000002	3.90863	2.29046e-4	2.19981e-4	0.0135522	0.0133403
chr1	168246932	168247031	250374	0	+	0.383838	(0.378,0.408]	chr1	29769	45	UTR3	UTR3:EXON_MRNA	SFT2D2	ENSG00000213064.10	ENST00000271375.7	protein_coding	protein_coding	protein_coding	protein_coding	3	85	2	3.15415	3.3491049999999998	3.54406	0.00110718	4.11608e-4	0.0306086	0.0181365
chr11	108270663	108270763	4857579	0	+	0.4	(0.378,0.408]	chr11	453158	2	SS3_PROX	SS3_PROX:INTRON	ATM	ENSG00000149311.20	ENST00000675843.1:ENST00000683174.1:ENST00000527805.6:ENST00000675595.1:ENST00000452508.6:ENST00000278616.9:ENST00000684037.1:ENST00000682516.1:ENST00000419286.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	85	2	3.15415	3.3491049999999998	3.54406	0.00110718	4.11608e-4	0.0306086	0.0181365
chr5	289609	289709	2312800	0	+	0.39	(0.378,0.408]	chr5	223715	128	INTRON	INTRON	PDCD6	ENSG00000249915.9	ENST00000614778.4:ENST00000618970.4:ENST00000513582.5:ENST00000264933.9:ENST00000505221.5:ENST00000507528.5:ENST00000505526.1:ENST00000507473.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	85	2	3.15415	3.3491049999999998	3.54406	0.00110718	4.11608e-4	0.0306086	0.0181365
chr11	5409366	5409466	4897313	0	-	0.25	[0,0.28]	chr11	459187	621	INTRON	INTRON	HBG2:ENSG00000239920:HBE1:OR51B5	ENSG00000196565.15:ENSG00000239920.2:ENSG00000213931.7:ENSG00000167355.8	ENST00000380252.6:ENST00000380259.7:ENST00000292896.3:ENST00000380237.5:ENST00000420726.6:ENST00000420465.6:ENST00000415970.6:ENST00000418729.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:nonsense_mediated_decay:processed_transcript	3	119	2	2.86095	3.34905	3.83715	0.00369266	3.63888e-4	0.0535094	0.0170637
chr22	20091134	20091234	7478342	0	+	0.39	(0.378,0.408]	chr22	762719	3	SS3_PROX	SS3_PROX:INTRON	DGCR8	ENSG00000128191.16	ENST00000383024.6:ENST00000351989.8:ENST00000495826.5:ENST00000407755.1:ENST00000498171.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	137	2	3.23534	3.348925	3.46251	1.37139e-4	5.26448e-5	0.0106749	0.00591845
chr6	12023602	12023702	2814339	0	+	0.32	(0.28,0.32]	chr6	264794	28	INTRON	INTRON	HIVEP1	ENSG00000095951.17	ENST00000491710.5:ENST00000487103.5:ENST00000379388.7:ENST00000627968.2:ENST00000541134.5:ENST00000442081.6:ENST00000478545.1:ENST00000484210.1	protein_coding	protein_coding	protein_coding	protein_coding	2	78	2	2.91851	3.34889	3.77927	0.0130672	3.56863e-4	0.093385	0.0169148
chr17	27117409	27117509	6579999	0	+	0.33	(0.32,0.35]	chr17	639586	206	INTRON	INTRON	ENSG00000285822	ENSG00000285822.1	ENST00000649401.1	lncRNA	lncRNA	lncRNA	lncRNA	5	131	2	2.53063	3.3488800000000003	4.16713	0.00105397	8.85881e-5	0.0299229	0.00842626
chr7	73205881	73205958	3331543	0	+	0.363636	(0.35,0.378]	chr7	309858	4	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GTF2IP4	ENSG00000233369.7	ENST00000544802.5	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	3	89	2	3.11823	3.3488350000000002	3.57944	0.0010429	5.25625e-4	0.0293983	0.0206013
chr5	98913273	98913373	2683917	0	-	0.46	(0.44,0.476]	chr5	253957	78	INTRON	INTRON	CHD1	ENSG00000153922.11	ENST00000614616.5:ENST00000284049.7	protein_coding	protein_coding	protein_coding	protein_coding	7	167	2	2.9649200000000002	3.3487150000000003	3.73251	3.28585e-5	2.74071e-5	0.00459178	0.00430942
chr1	54398264	54398363	463680	0	-	0.363636	(0.35,0.378]	chr1	55784	416	INTRON	INTRON	SSBP3	ENSG00000157216.16	ENST00000610401.5:ENST00000357475.9:ENST00000371319.8:ENST00000417664.7:ENST00000533946.6:ENST00000371320.8:ENST00000525990.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	54	2	1.59505	3.348655	5.10226	0.040425	0.00327038	0.161534	0.0508595
chr9	125239715	125239806	4352484	0	-	0.417582	(0.408,0.44]	chr9	399604	3	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HSPA5	ENSG00000044574.9	ENST00000324460.7:ENST00000680257.1:ENST00000679355.1:ENST00000681045.1:ENST00000681424.1:ENST00000681675.1:ENST00000681544.1:ENST00000680272.1:ENST00000679475.1:ENST00000680494.1:ENST00000681774.1:ENST00000680640.1:ENST00000680032.1:ENST00000681540.1:ENST00000680234.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	12	241	2	2.77281	3.34864	3.92447	9.54547e-6	9.48051e-6	0.00236283	0.00223957
chr11	66370843	66370943	4968341	0	-	0.28	[0,0.28]	chr11	468538	2	SS5_PROX	SS5_PROX:INTRON	SLC29A2	ENSG00000174669.12	ENST00000311161.11:ENST00000357440.7:ENST00000544554.5:ENST00000540386.5:ENST00000619145.4:ENST00000546034.1:ENST00000541567.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	87	2	3.15102	3.3486149999999997	3.54621	0.00767596	0.00124865	0.0753665	0.0328543
chr1	28002640	28002739	408136	0	-	0.464646	(0.44,0.476]	chr1	49158	22	INTRON	INTRON	EYA3	ENSG00000158161.16	ENST00000373871.8:ENST00000540618.5:ENST00000436342.6:ENST00000373864.5:ENST00000373863.3:ENST00000495923.5:ENST00000471498.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	40	2	1.83899	3.34858	4.85817	0.0589734	0.00223254	0.167915	0.0435144
chr6	122543368	122543468	2948385	0	+	0.46	(0.44,0.476]	chr6	277524	500	INTRON	INTRON	PKIB	ENSG00000135549.16	ENST00000615438.4:ENST00000392491.6:ENST00000608895.5:ENST00000618977.4:ENST00000583007.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	40	2	1.83899	3.34858	4.85817	0.0589734	0.00223254	0.167915	0.0435144
chrX	74242515	74242607	7841099	0	-	0.293478	(0.28,0.32]	chrX	799713	5	INTRON	INTRON	FTX	ENSG00000230590.12	ENST00000603672.5:ENST00000430772.6:ENST00000602776.6:ENST00000638681.1:ENST00000652319.1:ENST00000661133.1:ENST00000652071.1:ENST00000602812.6:ENST00000651703.1:ENST00000653018.1:ENST00000658448.1:ENST00000662240.1:ENST00000652527.1:ENST00000651451.1:ENST00000657611.1:ENST00000660481.1:ENST00000659574.1:ENST00000661084.1:ENST00000662494.1:ENST00000670936.1:ENST00000602420.6:ENST00000658203.1:ENST00000638985.1:ENST00000691187.1:ENST00000603037.2:ENST00000687056.1:ENST00000654870.2:ENST00000652540.1:ENST00000652331.2:ENST00000652013.1:ENST00000669263.1:ENST00000657070.1:ENST00000665069.1:ENST00000651936.1:ENST00000652496.1:ENST00000653874.2:ENST00000661335.1:ENST00000664123.1:ENST00000658439.1:ENST00000666535.1:ENST00000652970.1:ENST00000423992.3:ENST00000665313.2:ENST00000651140.1:ENST00000660100.1:ENST00000693483.1	lncRNA	lncRNA	lncRNA	lncRNA	4	124	2	2.84107	3.3485300000000002	3.85599	6.40806e-4	4.63052e-4	0.0228915	0.0198709
chr8	33834718	33834818	3731877	0	+	0.38	(0.378,0.408]	chr8	346791	293	INTRON	INTRON	ENSG00000253642	ENSG00000253642.6	ENST00000523063.5:ENST00000523336.2	lncRNA	lncRNA	lncRNA	lncRNA	1	32	2	2.60296	3.348375	4.09379	0.0267851	0.023912	0.129075	0.123349
chrX	66220430	66220530	7673268	0	+	0.47	(0.44,0.476]	chrX	785355	118	INTRON	INTRON	HEPH	ENSG00000089472.18	ENST00000519389.6:ENST00000683049.1:ENST00000458621.6:ENST00000684042.1:ENST00000343002.7:ENST00000336279.9:ENST00000441993.7:ENST00000419594.6:ENST00000682362.1:ENST00000425114.2:ENST00000682927.1:ENST00000683420.1:ENST00000684071.1:ENST00000684625.1:ENST00000684603.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	33	2	2.86231	3.3483549999999997	3.8344	0.041276	0.012214	0.161534	0.0910127
chr8	54010015	54010101	3953183	0	-	0.453488	(0.44,0.476]	chr8	362564	2	SS5_PROX	SS5_PROX:INTRON	TCEA1	ENSG00000187735.15	ENST00000396401.7:ENST00000521604.7:ENST00000521086.6:ENST00000522635.5:ENST00000522397.5:ENST00000640382.1:ENST00000640041.1:ENST00000520534.5:ENST00000518310.5:ENST00000517351.5:ENST00000521836.1:ENST00000518784.5:ENST00000519704.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	52	2	1.7965	3.34825	4.9	0.0205549	0.00423315	0.122348	0.0572185
chr2	54978440	54978539	1120681	0	-	0.282828	(0.28,0.32]	chr2	120130	33	INTRON	INTRON	RTN4	ENSG00000115310.19	ENST00000394609.6:ENST00000404909.5:ENST00000394611.6:ENST00000317610.11:ENST00000357732.8:ENST00000337526.11:ENST00000357376.7:ENST00000405240.5:ENST00000486085.5:ENST00000438462.1	protein_coding	protein_coding	protein_coding	protein_coding	3	55	2	2.1076	3.3481750000000003	4.58875	0.0230574	0.0133585	0.118056	0.100772
chr10	98134906	98135006	4505548	0	+	0.65	(0.57,1]	chr10	414844	2	SS5_PROX	SS5_PROX:INTRON	R3HCC1L	ENSG00000166024.14	ENST00000370584.7:ENST00000298999.8	protein_coding	protein_coding	protein_coding	protein_coding	2	35	2	3.13254	3.348115	3.56369	0.00310655	4.26536e-4	0.0512344	0.0189958
chr7	156883371	156883471	3687920	0	-	0.37	(0.35,0.378]	chr7	342096	461	INTRON	INTRON	LMBR1	ENSG00000105983.23	ENST00000353442.10:ENST00000415428.5:ENST00000454132.5:ENST00000434503.5:ENST00000430278.5:ENST00000434278.5:ENST00000444719.5:ENST00000461469.5:ENST00000414218.1:ENST00000434453.1:ENST00000498034.5:ENST00000433968.5:ENST00000485985.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	47	2	1.71046	3.3480350000000003	4.98561	0.0441269	0.00474226	0.162255	0.0600445
chr1	246263121	246263221	678266	0	-	0.37	(0.35,0.378]	chr1	79733	695	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000453676.5:ENST00000462422.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	47	2	1.65083	3.347975	5.04512	0.0521072	0.00393262	0.177022	0.0548259
chr13	52692924	52693024	5506153	0	+	0.37	(0.35,0.378]	chr13	526947	52	UTR3	UTR3:EXON_MRNA	SUGT1	ENSG00000165416.15	ENST00000310528.9	protein_coding	protein_coding	protein_coding	protein_coding	3	47	2	1.65083	3.347975	5.04512	0.0521072	0.00393262	0.177022	0.0548259
chr1	45821836	45821936	93994	0	+	0.37	(0.35,0.378]	chr1	12684	174	INTRON	INTRON	MAST2	ENSG00000086015.23	ENST00000470809.1:ENST00000361297.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	29	2	2.39746	3.347925	4.29839	0.041314	0.0294717	0.161534	0.128055
chr1	213069905	213070005	310886	0	+	0.37	(0.35,0.378]	chr1	35901	180	INTRON	INTRON	RPS6KC1	ENSG00000136643.12	ENST00000615329.4:ENST00000543354.5:ENST00000614059.4:ENST00000543470.5:ENST00000366960.8:ENST00000366959.4	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	2.39746	3.347925	4.29839	0.041314	0.0294717	0.161534	0.128055
chr11	58594562	58594662	4793898	0	+	0.36	(0.35,0.378]	chr11	443838	93	INTRON	INTRON	ZFP91	ENSG00000186660.15	ENST00000316059.7	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	2.39746	3.347925	4.29839	0.041314	0.0294717	0.161534	0.128055
chr21	21233242	21233342	7381342	0	+	0.36	(0.35,0.378]	chr21	752602	2343	INTRON	INTRON	NCAM2	ENSG00000154654.15	ENST00000400546.6	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	2.39746	3.347925	4.29839	0.041314	0.0294717	0.161534	0.128055
chr6	20663168	20663268	2829673	0	+	0.36	(0.35,0.378]	chr6	265655	134	INTRON	INTRON	CDKAL1	ENSG00000145996.11	ENST00000274695.8:ENST00000378610.1	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	2.39746	3.347925	4.29839	0.041314	0.0294717	0.161534	0.128055
chr6	56953284	56953384	3114535	0	-	0.36	(0.35,0.378]	chr6	291740	1	SS5_PROX	SS5_PROX:INTRON	DST	ENSG00000151914.22	ENST00000680361.1:ENST00000449297.6:ENST00000650917.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	29	2	2.39746	3.347925	4.29839	0.041314	0.0294717	0.161534	0.128055
chr7	111261698	111261798	3621099	0	-	0.37	(0.35,0.378]	chr7	337093	2978	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	29	2	2.39746	3.347925	4.29839	0.041314	0.0294717	0.161534	0.128055
chr10	73717292	73717392	4651932	0	-	0.37	(0.35,0.378]	chr10	428196	1	SS3_PROX	SS3_PROX:INTRON	BMS1P4	ENSG00000271816.1:ENSG00000242338.6	ENST00000580790.1:ENST00000584747.5:ENST00000441263.1	lncRNA	lncRNA	lncRNA:transcribed_unprocessed_pseudogene	lncRNA:processed_transcript:transcribed_unprocessed_pseudogene	1	29	2	2.30249	3.34776	4.39303	0.0519726	0.0237246	0.176696	0.118716
chr12	108559032	108559130	5405744	0	-	0.357143	(0.35,0.378]	chr12	515930	50	INTRON	INTRON	SART3	ENSG00000075856.12	ENST00000546815.6:ENST00000651280.1:ENST00000228284.8:ENST00000546728.5:ENST00000431469.6:ENST00000547528.5:ENST00000552221.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	29	2	2.30249	3.34776	4.39303	0.0519726	0.0237246	0.176696	0.118716
chr15	83501094	83501194	6082521	0	+	0.37	(0.35,0.378]	chr15	579050	98	INTRON	INTRON	SH3GL3	ENSG00000140600.17	ENST00000492099.1:ENST00000427482.7:ENST00000563901.5:ENST00000324537.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	29	2	2.30249	3.34776	4.39303	0.0519726	0.0237246	0.176696	0.118716
chr20	21310146	21310245	7248205	0	+	0.353535	(0.35,0.378]	chr20	735885	63	INTRON	INTRON	XRN2	ENSG00000088930.8	ENST00000377191.5	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	2.30249	3.34776	4.39303	0.0519726	0.0237246	0.176696	0.118716
chr5	131540190	131540289	2718218	0	-	0.353535	(0.35,0.378]	chr5	255596	73	INTRON	INTRON	RAPGEF6	ENSG00000158987.22	ENST00000509018.6:ENST00000507093.5:ENST00000296859.10:ENST00000627212.2:ENST00000308008.10:ENST00000515170.5:ENST00000510071.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	29	2	2.30249	3.34776	4.39303	0.0519726	0.0237246	0.176696	0.118716
chr12	6605480	6605578	5259657	0	-	0.530612	(0.515,0.57]	chr12	500839	25	INTRON	INTRON	CHD4	ENSG00000111642.16	ENST00000645022.1:ENST00000544040.7:ENST00000544484.6:ENST00000357008.7:ENST00000642810.1:ENST00000643335.1:ENST00000646806.1:ENST00000644137.1:ENST00000642879.1:ENST00000645645.1:ENST00000642594.1:ENST00000646268.1:ENST00000645095.1:ENST00000645005.1:ENST00000644801.1:ENST00000644289.1:ENST00000545942.6:ENST00000545584.2:ENST00000644132.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	27	2	2.52504	3.3477050000000004	4.17037	0.029342	0.0139194	0.128055	0.10247
chr16	89983179	89983273	6423394	0	+	0.531915	(0.515,0.57]	chr16	617008	9	INTRON	INTRON	AFG3L1P	ENSG00000223959.9	ENST00000429663.6:ENST00000418696.5:ENST00000690928.1:ENST00000436447.5:ENST00000457926.5:ENST00000688932.1:ENST00000685584.1:ENST00000437774.5:ENST00000557444.5:ENST00000421164.5:ENST00000388970.7:ENST00000421780.5:ENST00000423684.5:ENST00000458301.5	transcribed_unitary_pseudogene	retained_intron	transcribed_unitary_pseudogene	retained_intron:processed_transcript:transcribed_unitary_pseudogene	1	27	2	2.52504	3.3477050000000004	4.17037	0.029342	0.0139194	0.128055	0.10247
chr8	144295472	144295572	3881563	0	+	0.52	(0.515,0.57]	chr8	356871	15	INTRON	INTRON	HSF1	ENSG00000185122.11	ENST00000400780.8:ENST00000528838.6:ENST00000528988.1:ENST00000533240.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	27	2	2.52504	3.3477050000000004	4.17037	0.029342	0.0139194	0.128055	0.10247
chr1	248916969	248917061	352071	0	+	0.369565	(0.35,0.378]	chr1	40715	5	CDS	CDS:EXON_MRNA:SS3_PROX:INTRON	PGBD2	ENSG00000185220.12	ENST00000355360.8:ENST00000329291.6:ENST00000462488.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	30	2	2.72498	3.34765	3.97032	0.0578667	0.0168499	0.167723	0.11068
chr10	91952358	91952456	4489017	0	+	0.367347	(0.35,0.378]	chr10	413312	4	INTRON	INTRON	BTAF1	ENSG00000095564.15	ENST00000265990.12	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	2.72498	3.34765	3.97032	0.0578667	0.0168499	0.167723	0.11068
chr12	42375773	42375872	5118732	0	+	0.363636	(0.35,0.378]	chr12	482964	3	INTRON	INTRON	PPHLN1	ENSG00000134283.18	ENST00000549190.5:ENST00000337898.10:ENST00000395580.7:ENST00000610488.4:ENST00000619544.4:ENST00000613154.4:ENST00000551723.5:ENST00000395568.6:ENST00000256678.12:ENST00000358314.12:ENST00000449194.6:ENST00000552761.5:ENST00000317560.13:ENST00000432191.6:ENST00000552202.5:ENST00000552794.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	30	2	2.72498	3.34765	3.97032	0.0578667	0.0168499	0.167723	0.11068
chr13	113483039	113483139	5652756	0	-	0.37	(0.35,0.378]	chr13	538714	19	INTRON	INTRON	DCUN1D2	ENSG00000150401.15	ENST00000478244.6:ENST00000332592.7:ENST00000375403.6:ENST00000438545.6:ENST00000465938.5:ENST00000496873.1:ENST00000460318.1:ENST00000439909.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	30	2	2.72498	3.34765	3.97032	0.0578667	0.0168499	0.167723	0.11068
chr22	37872877	37872976	7511933	0	+	0.363636	(0.35,0.378]	chr22	767200	17	INTRON	INTRON	EIF3L	ENSG00000100129.18	ENST00000412331.6:ENST00000624234.3:ENST00000381683.10:ENST00000652021.1:ENST00000477256.5:ENST00000406934.5:ENST00000482600.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	30	2	2.72498	3.34765	3.97032	0.0578667	0.0168499	0.167723	0.11068
chr7	7578657	7578756	3275382	0	+	0.353535	(0.35,0.378]	chr7	304618	41	INTRON	INTRON	MIOS	ENSG00000164654.16	ENST00000405785.5:ENST00000340080.9	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	2.72498	3.34765	3.97032	0.0578667	0.0168499	0.167723	0.11068
chr10	50391692	50391792	4618362	0	-	0.37	(0.35,0.378]	chr10	425422	470	INTRON	INTRON	SGMS1	ENSG00000198964.14	ENST00000429490.5:ENST00000361781.7:ENST00000619438.4:ENST00000492601.2:ENST00000609445.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	39	2	1.9755	3.347515	4.71953	0.0398617	0.0103314	0.161534	0.0850389
chr2	23795839	23795939	1079614	0	-	0.37	(0.35,0.378]	chr2	115224	68	INTRON	INTRON	ATAD2B	ENSG00000119778.15	ENST00000238789.10:ENST00000381024.4:ENST00000474583.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	39	2	1.9755	3.347515	4.71953	0.0398617	0.0103314	0.161534	0.0850389
chr8	22612702	22612794	3714437	0	+	0.358696	(0.35,0.378]	chr8	345005	1	UTR5	UTR5:EXON_MRNA:SS3_PROX:INTRON	CCAR2	ENSG00000158941.17	ENST00000308511.9:ENST00000389279.7:ENST00000520861.5:ENST00000522599.5	protein_coding	protein_coding	protein_coding	protein_coding	2	39	2	1.9755	3.347515	4.71953	0.0398617	0.0103314	0.161534	0.0850389
chrX	40719087	40719186	7806614	0	-	0.373737	(0.35,0.378]	chrX	796012	40	INTRON	INTRON	MED14	ENSG00000180182.11	ENST00000324817.6:ENST00000482034.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	39	2	1.9755	3.347515	4.71953	0.0398617	0.0103314	0.161534	0.0850389
chr19	4104222	4104322	7119341	0	-	0.46	(0.44,0.476]	chr19	716167	2	SS5_PROX	SS5_PROX:INTRON	MAP2K2	ENSG00000126934.15	ENST00000262948.10:ENST00000394867.9:ENST00000687128.1:ENST00000602167.5:ENST00000599345.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	98	2	2.85407	3.3474950000000003	3.84092	4.30929e-4	2.66933e-4	0.018618	0.0149989
chr11	20406628	20406726	4751114	0	+	0.357143	(0.35,0.378]	chr11	440011	13	EXON_MRNA	EXON_MRNA:INTRON	PRMT3	ENSG00000185238.13	ENST00000330796.9:ENST00000331079.11:ENST00000437750.2:ENST00000529592.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	39	2	1.90405	3.34742	4.79079	0.0482651	0.00846427	0.171852	0.0776969
chr15	25422461	25422558	6121675	0	-	0.371134	(0.35,0.378]	chr15	582933	1	INTRON	INTRON	UBE3A	ENSG00000114062.22	ENST00000648336.2:ENST00000438097.6:ENST00000635914.1:ENST00000638155.1:ENST00000637886.1:ENST00000638011.1:ENST00000649550.1:ENST00000650110.1:ENST00000630424.2:ENST00000566215.5:ENST00000428984.6:ENST00000675177.1:ENST00000675593.1:ENST00000625778.3:ENST00000675000.1:ENST00000626793.2:ENST00000628733.2:ENST00000630907.2:ENST00000675038.1:ENST00000629886.2:ENST00000628267.2:ENST00000629252.2:ENST00000625681.2:ENST00000627018.1:ENST00000676452.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	39	2	1.90405	3.34742	4.79079	0.0482651	0.00846427	0.171852	0.0776969
chr15	64357461	64357561	6204846	0	-	0.43	(0.408,0.44]	chr15	591782	14	INTRON	INTRON	ENSG00000259316	ENSG00000259316.12	ENST00000634251.1:ENST00000634847.3:ENST00000634318.1:ENST00000635160.1:ENST00000635704.1:ENST00000634529.1:ENST00000635511.1:ENST00000635605.1:ENST00000635593.1:ENST00000634259.2:ENST00000560278.2:ENST00000635413.1:ENST00000634538.1:ENST00000635320.1:ENST00000558783.2	protein_coding	retained_intron	protein_coding	retained_intron:nonsense_mediated_decay:processed_transcript	1	30	2	2.36073	3.347365	4.334	0.0481658	0.011982	0.153019	0.0962115
chr17	67832914	67833014	6667775	0	+	0.43	(0.408,0.44]	chr17	650544	62	INTRON	INTRON	BPTF	ENSG00000171634.19	ENST00000306378.11:ENST00000544778.6:ENST00000321892.8:ENST00000342579.8:ENST00000644067.1:ENST00000424123.7	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	2.36073	3.347365	4.334	0.0481658	0.011982	0.153019	0.0962115
chr2	86556437	86556537	1171711	0	-	0.43	(0.408,0.44]	chr2	125049	137	INTRON	INTRON	CHMP3	ENSG00000115561.16	ENST00000263856.9:ENST00000409727.5:ENST00000409225.2:ENST00000393773.7:ENST00000486404.5:ENST00000485465.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	30	2	2.36073	3.347365	4.334	0.0481658	0.011982	0.153019	0.0962115
chr2	237697000	237697099	1049336	0	+	0.414141	(0.408,0.44]	chr2	111548	41	INTRON	INTRON	LRRFIP1	ENSG00000124831.19	ENST00000308482.14:ENST00000465870.5:ENST00000498053.5:ENST00000289175.10:ENST00000244815.9:ENST00000420665.5:ENST00000392000.4:ENST00000473815.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	30	2	2.36073	3.347365	4.334	0.0481658	0.011982	0.153019	0.0962115
chr22	31429278	31429378	7503314	0	+	0.43	(0.408,0.44]	chr22	765635	17	INTRON	INTRON	DRG1	ENSG00000185721.13	ENST00000331457.9:ENST00000469673.1:ENST00000548143.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	30	2	2.36073	3.347365	4.334	0.0481658	0.011982	0.153019	0.0962115
chr4	112630880	112630972	2228844	0	-	0.434783	(0.408,0.44]	chr4	218224	5	INTRON	INTRON	ZGRF1	ENSG00000138658.16	ENST00000445203.6:ENST00000505019.6:ENST00000473015.5:ENST00000309071.9:ENST00000264370.9:ENST00000514770.5:ENST00000503172.5:ENST00000502805.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	30	2	2.36073	3.347365	4.334	0.0481658	0.011982	0.153019	0.0962115
chr8	42286241	42286341	3743089	0	+	0.42	(0.408,0.44]	chr8	348064	137	INTRON	INTRON	IKBKB	ENSG00000104365.16	ENST00000520810.6:ENST00000629753.2:ENST00000517890.5:ENST00000520835.7:ENST00000523105.5:ENST00000519735.5:ENST00000519733.5:ENST00000518679.5:ENST00000517917.5:ENST00000342222.6:ENST00000520201.5:ENST00000518647.5:ENST00000517388.5:ENST00000521661.5:ENST00000520655.5:ENST00000517812.5:ENST00000522147.4:ENST00000523517.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	30	2	2.36073	3.347365	4.334	0.0481658	0.011982	0.153019	0.0962115
chr9	112088919	112089018	4315905	0	-	0.434343	(0.408,0.44]	chr9	396924	84	INTRON	INTRON	SUSD1	ENSG00000106868.17	ENST00000374270.8:ENST00000374263.7:ENST00000355396.7:ENST00000374264.6:ENST00000529933.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	30	2	2.36073	3.347365	4.334	0.0481658	0.011982	0.153019	0.0962115
chr5	145628906	145629006	2744570	0	-	0.38	(0.378,0.408]	chr5	258670	1552	INTRON	INTRON	PRELID2	ENSG00000186314.12	ENST00000510259.5	protein_coding	processed_transcript	protein_coding	processed_transcript	2	38	2	1.81685	3.3472350000000004	4.87762	0.0597868	0.00553849	0.189982	0.0648867
chr1	174443370	174443469	259964	0	+	0.30303	(0.28,0.32]	chr1	30818	489	INTRON	INTRON	RABGAP1L	ENSG00000152061.24	ENST00000357444.10:ENST00000251507.8:ENST00000681986.1:ENST00000367690.5:ENST00000526253.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	35	2	2.2609	3.34715	4.4334	0.0671429	0.0163355	0.183051	0.109464
chr6	157168865	157168964	3011102	0	+	0.282828	(0.28,0.32]	chr6	281199	18	EXON_MRNA	EXON_MRNA:INTRON	ARID1B	ENSG00000049618.24	ENST00000346085.10:ENST00000636930.2:ENST00000647938.1:ENST00000350026.10:ENST00000414678.7:ENST00000319584.11:ENST00000635849.1:ENST00000637904.1:ENST00000637810.1:ENST00000637015.1:ENST00000637568.1:ENST00000635957.1:ENST00000400790.3:ENST00000637722.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	35	2	2.2609	3.34715	4.4334	0.0671429	0.0163355	0.183051	0.109464
chr10	17668599	17668698	4399511	0	+	0.363636	(0.35,0.378]	chr10	406156	77	INTRON	INTRON	STAM	ENSG00000136738.15	ENST00000377524.8:ENST00000377500.1:ENST00000445846.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	41	2	2.39583	3.3471100000000003	4.29839	0.0294717	0.0107976	0.128055	0.0920575
chr4	48344622	48344721	1957053	0	+	0.363636	(0.35,0.378]	chr4	196116	21	INTRON	INTRON	SLAIN2	ENSG00000109171.15	ENST00000264313.11	protein_coding	protein_coding	protein_coding	protein_coding	2	41	2	2.39583	3.3471100000000003	4.29839	0.0294717	0.0107976	0.128055	0.0920575
chrX	124562782	124562875	7880974	0	-	0.354839	(0.35,0.378]	chrX	802721	6	INTRON	INTRON	TENM1	ENSG00000009694.13	ENST00000371130.7:ENST00000422452.2	protein_coding	protein_coding	protein_coding	protein_coding	2	41	2	2.39583	3.3471100000000003	4.29839	0.0294717	0.0107976	0.128055	0.0920575
chr6	68681421	68681521	2886780	0	+	0.5	(0.476,0.515]	chr6	273730	416	INTRON	INTRON	ADGRB3	ENSG00000135298.15	ENST00000370598.6:ENST00000684661.1:ENST00000546190.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	61	2	3.19975	3.34693	3.49411	0.00383299	9.23453e-4	0.0542786	0.0278392
chr4	55373	55472	1905307	0	+	0.282828	(0.28,0.32]	chr4	190993	15	INTRON	INTRON	ZNF595	ENSG00000272602.6	ENST00000608255.2:ENST00000609518.5:ENST00000509152.3:ENST00000610261.6:ENST00000502981.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	124	2	2.7703700000000002	3.346855	3.92334	8.96564e-4	3.47778e-4	0.0273866	0.017378
chr1	203024467	203024562	295429	0	+	0.315789	(0.28,0.32]	chr1	33983	16	UTR3	UTR3:EXON_MRNA	TMEM183A	ENSG00000163444.12	ENST00000367242.4	protein_coding	protein_coding	protein_coding	protein_coding	8	233	2	2.72218	3.34682	3.97146	1.34072e-4	1.94186e-5	0.00998237	0.00357248
chr9	131130465	131130565	4215670	0	+	0.35	(0.32,0.35]	chr9	386521	3	SS3_PROX	SS3_PROX:INTRON	NUP214	ENSG00000126883.19	ENST00000695497.1:ENST00000695498.1:ENST00000695496.1:ENST00000695495.1:ENST00000695494.1:ENST00000695493.1:ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000525561.2:ENST00000651022.1:ENST00000651639.1:ENST00000695499.1:ENST00000526412.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	176	2	3.01123	3.346805	3.68238	8.14476e-5	6.25439e-5	0.00755207	0.00701349
chr1	179875682	179875781	593448	0	-	0.393939	(0.378,0.408]	chr1	71117	21	EXON_LNCRNA	EXON_LNCRNA:INTRON	TOR1AIP2	ENSG00000169905.13	ENST00000367612.7:ENST00000609928.6:ENST00000482587.5:ENST00000495650.1:ENST00000474318.1:ENST00000483123.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	209	2	3.11294	3.34679	3.58064	1.38197e-5	1.33023e-5	0.00295118	0.00271047
chrX	123676256	123676356	7878480	0	-	0.45	(0.44,0.476]	chrX	802551	41	INTRON	INTRON	THOC2	ENSG00000125676.20	ENST00000245838.13:ENST00000355725.8:ENST00000491737.5:ENST00000433883.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	125	2	2.3355	3.346705	4.35791	0.00123661	1.84928e-5	0.0326427	0.00349761
chr6	107425900	107426000	3181577	0	-	0.49	(0.476,0.515]	chr6	296346	912	INTRON	INTRON	PDSS2	ENSG00000164494.12	ENST00000369037.9:ENST00000369031.4	protein_coding	protein_coding	protein_coding	protein_coding	3	47	2	2.16306	3.3466450000000005	4.53023	0.0119748	0.00973468	0.0899583	0.0877284
chr15	52046279	52046369	6029294	0	+	0.422222	(0.408,0.44]	chr15	574436	6	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	MAPK6	ENSG00000069956.14	ENST00000691380.1:ENST00000681888.1:ENST00000261845.7:ENST00000680066.1:ENST00000680777.1:ENST00000680652.1:ENST00000558841.1:ENST00000558891.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	63	2	2.89795	3.3466449999999996	3.79534	0.0110735	2.17043e-4	0.0873897	0.0129235
chrX	101150356	101150456	7694676	0	+	0.43	(0.408,0.44]	chrX	787429	18	INTRON	INTRON	CENPI	ENSG00000102384.14	ENST00000684367.1:ENST00000423383.3:ENST00000682095.1:ENST00000372927.5	protein_coding	protein_coding	protein_coding	protein_coding	2	63	2	2.89795	3.3466449999999996	3.79534	0.0110735	2.17043e-4	0.0873897	0.0129235
chr2	85039803	85039902	820954	0	+	0.474747	(0.44,0.476]	chr2	91438	43	INTRON	INTRON	KCMF1	ENSG00000176407.18	ENST00000409785.9:ENST00000453448.1	protein_coding	protein_coding	protein_coding	protein_coding	2	63	2	2.86231	3.346505	3.8307	0.012214	1.81621e-4	0.0910127	0.0117212
chr2	170011640	170011740	910017	0	+	0.34	(0.32,0.35]	chr2	100389	23	INTRON	INTRON	UBR3	ENSG00000144357.18	ENST00000272793.11:ENST00000430321.5:ENST00000392632.6:ENST00000439681.1:ENST00000444475.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	49	2	1.61669	3.34649	5.07629	0.0578816	0.00468114	0.188651	0.0600108
chr3	177085575	177085674	1871316	0	-	0.252525	[0,0.28]	chr3	187380	53	INTRON	INTRON	TBL1XR1	ENSG00000177565.18	ENST00000457928.7:ENST00000430069.5:ENST00000673974.1:ENST00000631253.2:ENST00000352800.10:ENST00000422442.6:ENST00000428970.5:ENST00000424913.5:ENST00000437738.5:ENST00000431421.5:ENST00000635794.1:ENST00000630796.2:ENST00000450267.5:ENST00000630833.2:ENST00000431674.5:ENST00000422066.5:ENST00000443315.5:ENST00000627825.2:ENST00000427349.5:ENST00000413084.5:ENST00000637137.1:ENST00000491623.2:ENST00000637544.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	87	2	3.0836	3.3464400000000003	3.60928	0.00940284	9.66382e-4	0.0817766	0.0285961
chr2	55388177	55388277	1124074	0	-	0.28	[0,0.28]	chr2	120560	129	INTRON	INTRON	CCDC88A	ENSG00000115355.18	ENST00000263630.13:ENST00000436346.7:ENST00000336838.10:ENST00000642200.1:ENST00000413716.7:ENST00000643413.1:ENST00000647401.1:ENST00000645311.1:ENST00000646796.1:ENST00000645571.1:ENST00000645477.1:ENST00000645072.1:ENST00000644890.1:ENST00000644630.1:ENST00000647098.1:ENST00000646324.1:ENST00000642890.1:ENST00000647517.1:ENST00000645031.1:ENST00000645484.1:ENST00000645529.1:ENST00000644033.1:ENST00000644193.1:ENST00000645168.1:ENST00000647341.1:ENST00000430086.1:ENST00000644127.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	119	2	3.33621	3.3464	3.35659	0.00427056	2.76742e-4	0.0573912	0.0148174
chr19	14735742	14735840	7145329	0	-	0.306122	(0.28,0.32]	chr19	721518	35	UTR3	UTR3:EXON_MRNA	ADGRE2	ENSG00000127507.18	ENST00000315576.8:ENST00000360222.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	36	2	2.45545	3.34632	4.23719	0.0438092	0.0264147	0.14901	0.133676
chr5	29099883	29099983	2332754	0	+	0.29	(0.28,0.32]	chr5	225147	294	INTRON	INTRON	LINC02109	ENSG00000259786.7	ENST00000658190.1	lncRNA	lncRNA	lncRNA	lncRNA	1	36	2	2.45545	3.34632	4.23719	0.0438092	0.0264147	0.14901	0.133676
chr5	131751579	131751679	2720290	0	-	0.29	(0.28,0.32]	chr5	255730	65	INTRON	INTRON	FNIP1	ENSG00000217128.13	ENST00000510461.6:ENST00000307954.12:ENST00000307968.11:ENST00000511848.1	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	2.45545	3.34632	4.23719	0.0438092	0.0264147	0.14901	0.133676
chr7	153373748	153373847	3681808	0	-	0.292929	(0.28,0.32]	chr7	341707	46	INTRON	INTRON	LINC01287	ENSG00000234722.5	ENST00000647863.1:ENST00000453187.2:ENST00000664249.1:ENST00000663745.1	lncRNA	lncRNA	lncRNA	lncRNA	1	36	2	2.45545	3.34632	4.23719	0.0438092	0.0264147	0.14901	0.133676
chr14	69661512	69661611	5776211	0	+	0.424242	(0.408,0.44]	chr14	547310	24	INTRON	INTRON	SUSD6	ENSG00000100647.8	ENST00000342745.5:ENST00000556993.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	31	2	2.58624	3.3460900000000002	4.10594	0.0273686	0.0219367	0.123904	0.123836
chr3	14959196	14959296	1371895	0	+	0.41	(0.408,0.44]	chr3	144598	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NR2C2	ENSG00000177463.16	ENST00000425241.6:ENST00000413118.5:ENST00000435454.5:ENST00000323373.10:ENST00000475707.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	31	2	2.58624	3.3460900000000002	4.10594	0.0273686	0.0219367	0.123904	0.123836
chr4	88821280	88821379	2200597	0	-	0.414141	(0.408,0.44]	chr4	215954	159	INTRON	INTRON	FAM13A	ENSG00000138640.15	ENST00000395002.6:ENST00000264344.10:ENST00000503556.5:ENST00000511976.5:ENST00000508369.5:ENST00000513837.5:ENST00000504836.5:ENST00000507352.1:ENST00000502459.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	31	2	2.58624	3.3460900000000002	4.10594	0.0273686	0.0219367	0.123904	0.123836
chr9	37423608	37423700	4120063	0	+	0.467391	(0.44,0.476]	chr9	375452	4	INTRON	INTRON	GRHPR	ENSG00000137106.18	ENST00000493368.5:ENST00000318158.11:ENST00000460882.5:ENST00000377824.8:ENST00000487399.5:ENST00000491488.5:ENST00000607784.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	63	2	3.14559	3.345955	3.54632	0.00384923	9.9951e-4	0.0562562	0.0288906
chr11	68520344	68520441	4817932	0	+	0.443299	(0.44,0.476]	chr11	448925	3	INTRON	INTRON	PPP6R3	ENSG00000110075.15	ENST00000530427.5:ENST00000528635.5:ENST00000529907.5:ENST00000533127.5:ENST00000534534.5:ENST00000529344.5:ENST00000524845.5:ENST00000393800.7:ENST00000265637.8:ENST00000524904.5:ENST00000393801.7:ENST00000265636.9:ENST00000529710.5:ENST00000527403.6:ENST00000525050.5:ENST00000527069.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	37	2	2.00609	3.345865	4.68564	0.0360127	0.00816201	0.152355	0.0766625
chr10	68359195	68359295	4638661	0	-	0.46	(0.44,0.476]	chr10	426535	34	INTRON	INTRON	RUFY2	ENSG00000204130.14	ENST00000466493.5:ENST00000484083.5:ENST00000463210.6:ENST00000602465.6:ENST00000388768.6:ENST00000265865.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	37	2	1.93084	3.34576	4.76068	0.0443175	0.00653414	0.162302	0.0699952
chr21	46444599	46444693	7422485	0	+	0.37234	(0.35,0.378]	chr21	756956	8	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	PCNT	ENSG00000160299.18	ENST00000695558.1:ENST00000359568.10:ENST00000480896.5:ENST00000695527.1:ENST00000695528.1:ENST00000695529.1:ENST00000695530.1:ENST00000418394.2:ENST00000695532.1:ENST00000695531.1:ENST00000695533.1:ENST00000695534.1:ENST00000695535.1:ENST00000695536.1:ENST00000695537.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	36	2	2.89003	3.3456599999999996	3.80129	0.0504034	0.0122391	0.17488	0.0910127
chr3	195964012	195964104	1896696	0	-	0.369565	(0.35,0.378]	chr3	189800	2	INTRON	INTRON	SDHAP1	ENSG00000185485.14	ENST00000427149.5:ENST00000427841.5:ENST00000354559.9:ENST00000440850.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	3	47	2	1.76773	3.34564	4.92355	0.0373863	0.00573514	0.155878	0.0657377
chr21	14748179	14748277	7430068	0	-	0.5	(0.476,0.515]	chr21	757871	19	EXON_LNCRNA	EXON_LNCRNA:INTRON	ENSG00000232884	ENSG00000232884.10	ENST00000673788.1:ENST00000660333.1:ENST00000660772.1:ENST00000665066.1:ENST00000670675.1:ENST00000674136.1:ENST00000658213.1:ENST00000455253.6:ENST00000654377.1:ENST00000454128.3:ENST00000655631.1:ENST00000661285.1	lncRNA	lncRNA	lncRNA	lncRNA	5	133	2	2.69854	3.34559	3.99264	0.00121528	2.81371e-6	0.031919	0.00107271
chr11	14343583	14343682	4917518	0	-	0.545455	(0.515,0.57]	chr11	460809	16	INTRON	INTRON	RRAS2	ENSG00000133818.14	ENST00000256196.9:ENST00000537760.5:ENST00000529237.5:ENST00000534746.5:ENST00000526063.5:ENST00000532814.5:ENST00000532950.5:ENST00000526717.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	87	2	2.45375	3.345585	4.23742	0.00273605	2.14737e-5	0.0483437	0.00377331
chr12	112035212	112035308	5414659	0	-	0.375	(0.35,0.378]	chr12	517120	20	EXON_MRNA	EXON_MRNA:INTRON	NAA25	ENSG00000111300.10	ENST00000261745.9:ENST00000552527.5:ENST00000548181.1:ENST00000549711.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	47	2	1.58862	3.34544	5.10226	0.0615516	0.00327038	0.193423	0.0508595
chr3	177171616	177171716	1872190	0	-	0.55	(0.515,0.57]	chr3	187438	3	INTRON	INTRON	TBL1XR1	ENSG00000177565.18	ENST00000457928.7:ENST00000430069.5:ENST00000673974.1:ENST00000352800.10:ENST00000422442.6:ENST00000428970.5:ENST00000424913.5:ENST00000437738.5:ENST00000431421.5:ENST00000635794.1:ENST00000630796.2:ENST00000450267.5:ENST00000630833.2:ENST00000431674.5:ENST00000422066.5:ENST00000443315.5:ENST00000627825.2:ENST00000427349.5:ENST00000413084.5:ENST00000637137.1:ENST00000491623.2:ENST00000637544.1:ENST00000636187.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	43	2	1.49871	3.345395	5.19208	0.0770828	3.4344e-4	0.196285	0.0164987
chr5	113020512	113020611	2453835	0	+	0.343434	(0.32,0.35]	chr5	235130	72	UTR3	UTR3:EXON_MRNA	DCP2	ENSG00000172795.17	ENST00000389063.3	protein_coding	protein_coding	protein_coding	protein_coding	5	70	2	1.99685	3.3453250000000003	4.6938	0.0137794	0.00667915	0.0949306	0.0738715
chr9	136438107	136438207	4374552	0	-	0.54	(0.515,0.57]	chr9	402933	27	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	INPP5E	ENSG00000148384.14	ENST00000676019.1:ENST00000371712.4:ENST00000674513.1:ENST00000635815.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	72	2	3.06239	3.3453	3.62821	6.62949e-4	4.12866e-4	0.0234815	0.0181365
chr12	912708	912805	5255106	0	-	0.309278	(0.28,0.32]	chr12	500056	11	UTR3	UTR3:EXON_MRNA	RAD52	ENSG00000002016.18	ENST00000358495.8:ENST00000228345.9:ENST00000468231.5:ENST00000481052.5:ENST00000430095.6:ENST00000488642.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	104	2	2.82151	3.345275	3.86904	0.00341865	2.33993e-4	0.0517761	0.0135358
chr9	130733554	130733654	4214060	0	+	0.47	(0.44,0.476]	chr9	386427	187	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000393293.4	protein_coding	protein_coding	protein_coding	protein_coding	13	331	2	3.14511	3.34524	3.54537	2.41989e-6	7.31951e-7	9.85429e-4	5.16308e-4
chr2	96886955	96887055	1182094	0	-	0.52	(0.515,0.57]	chr2	126720	81	INTRON	INTRON	FAM178B	ENSG00000168754.15	ENST00000393526.6:ENST00000490605.3:ENST00000470789.5:ENST00000494172.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	43	2	1.69407	3.34521	4.99635	0.0459452	8.06602e-4	0.149888	0.0258804
chr19	15261168	15261265	7146679	0	-	0.536082	(0.515,0.57]	chr19	721912	10	INTRON	INTRON	BRD4	ENSG00000141867.19	ENST00000679869.1:ENST00000263377.6:ENST00000371835.8:ENST00000360016.9:ENST00000594841.5:ENST00000602230.1:ENST00000678800.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	65	2	1.26017	3.34518	5.43019	0.04508	2.60422e-4	0.163403	0.0148796
chr4	2403943	2404043	2099584	0	-	0.42	(0.408,0.44]	chr4	207734	392	INTRON	INTRON	ZFYVE28	ENSG00000159733.14	ENST00000290974.7:ENST00000511071.5:ENST00000509171.5:ENST00000503000.1:ENST00000508184.5	protein_coding	protein_coding	protein_coding	protein_coding	3	85	2	3.0946	3.3451199999999996	3.59564	7.51561e-4	5.73354e-4	0.0251179	0.0217398
chr1	227253563	227253663	651070	0	-	0.31	(0.28,0.32]	chr1	77103	1	SS5_PROX	SS5_PROX:INTRON	CDC42BPA	ENSG00000143776.20	ENST00000366766.8:ENST00000366769.7:ENST00000334218.9:ENST00000366767.7:ENST00000366764.8:ENST00000478573.6:ENST00000682551.1:ENST00000462553.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	38	2	2.67975	3.3448849999999997	4.01002	0.0434868	0.0252505	0.162255	0.12011
chr6	35687531	35687631	3087506	0	-	0.32	(0.28,0.32]	chr6	288789	443	INTRON	INTRON	FKBP5	ENSG00000096060.15	ENST00000536438.5:ENST00000539068.5:ENST00000357266.9:ENST00000542713.1	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	2.67975	3.3448849999999997	4.01002	0.0434868	0.0252505	0.162255	0.12011
chr18	1356539	1356638	6941746	0	-	0.383838	(0.378,0.408]	chr18	686589	27	INTRON	INTRON	LINC00470	ENSG00000132204.14	ENST00000657423.1:ENST00000657618.1:ENST00000584090.5:ENST00000660947.1:ENST00000669242.1:ENST00000660475.1:ENST00000653775.1:ENST00000661931.1:ENST00000412816.7:ENST00000577867.5:ENST00000584492.5:ENST00000667416.1:ENST00000661852.1:ENST00000657919.1:ENST00000661646.1:ENST00000667776.1:ENST00000654559.1:ENST00000661233.1:ENST00000653213.1:ENST00000659094.1:ENST00000660964.1:ENST00000577403.6:ENST00000660358.1:ENST00000669153.1:ENST00000657121.1:ENST00000655957.1:ENST00000659289.1:ENST00000665133.1:ENST00000671558.1:ENST00000666542.1:ENST00000663512.1:ENST00000582862.6:ENST00000578835.5:ENST00000669312.1:ENST00000581430.5:ENST00000581212.1:ENST00000658090.1:ENST00000667225.1	lncRNA	lncRNA	lncRNA	lncRNA	7	179	2	2.55439	3.3446550000000004	4.13492	4.01276e-4	3.11627e-6	0.0179994	0.00125281
chr3	196064528	196064628	1897367	0	-	0.28	[0,0.28]	chr3	189934	1	SS3_PROX	SS3_PROX:INTRON	TFRC	ENSG00000072274.13	ENST00000420415.5:ENST00000360110.9:ENST00000392396.7:ENST00000464368.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	52	2	2.48813	3.344595	4.20106	0.0695895	0.00953591	0.184298	0.0863913
chr3	43714346	43714446	1410417	0	+	0.58	(0.57,1]	chr3	147950	21	INTRON	INTRON	ABHD5	ENSG00000011198.10	ENST00000643520.1:ENST00000458276.7:ENST00000649763.1:ENST00000643140.1:ENST00000643500.1:ENST00000644371.2:ENST00000013894.3:ENST00000646378.1:ENST00000643477.1:ENST00000646799.1:ENST00000454293.2:ENST00000642351.1:ENST00000413300.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	33	2	1.79898	3.3444800000000003	4.88998	0.0206524	4.016e-4	0.122348	0.0185763
chr5	91371102	91371201	2674859	0	-	0.414141	(0.408,0.44]	chr5	253079	26	UTR3	UTR3:EXON_MRNA	ARRDC3	ENSG00000113369.9	ENST00000265138.4:ENST00000511391.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	126	2	2.67594	3.34443	4.01292	1.93157e-4	1.20325e-4	0.012131	0.00992311
chr11	108050366	108050466	4856148	0	+	0.5	(0.476,0.515]	chr11	452888	3	SS5_PROX	SS5_PROX:INTRON	CUL5	ENSG00000166266.14	ENST00000393094.7:ENST00000532064.5:ENST00000531427.5:ENST00000532782.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	82	2	2.90668	3.3444000000000003	3.78212	0.00164243	2.36145e-4	0.0369207	0.0136195
chr10	5777241	5777341	4544553	0	-	0.5	(0.476,0.515]	chr10	419772	29	INTRON	INTRON	GDI2	ENSG00000057608.17	ENST00000380191.9:ENST00000447751.5:ENST00000380181.7:ENST00000456041.5	protein_coding	protein_coding	protein_coding	protein_coding	5	131	2	2.89208	3.34431	3.79654	4.83014e-4	1.01833e-5	0.0203603	0.00233783
chr5	180495320	180495420	2561870	0	+	0.38	(0.378,0.408]	chr5	245077	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	CNOT6	ENSG00000113300.13	ENST00000261951.9:ENST00000510148.1:ENST00000393356.7:ENST00000507016.1:ENST00000618123.4:ENST00000502447.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	58	2	1.45934	3.34429	5.22924	0.0442931	0.00172721	0.162302	0.0374701
chr15	34436248	34436341	6133253	0	-	0.387097	(0.378,0.408]	chr15	584292	4	INTRON	INTRON	GOLGA8A	ENSG00000175265.18	ENST00000359187.5:ENST00000569781.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	89	2	3.16956	3.34408	3.5186	8.45009e-4	5.70211e-4	0.0263813	0.0220524
chr1	70418726	70418824	143010	0	+	0.377551	(0.35,0.378]	chr1	16071	3	INTRON	INTRON	CTH	ENSG00000116761.12	ENST00000411986.6:ENST00000370938.8:ENST00000464926.1:ENST00000346806.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	39	2	2.04358	3.344075	4.64457	0.0329533	0.012652	0.145171	0.0926667
chr3	191463554	191463654	1590563	0	+	0.36	(0.35,0.378]	chr3	164641	22	INTRON	INTRON	ENSG00000223812	ENSG00000223812.8	ENST00000657540.1:ENST00000439804.6:ENST00000663647.1:ENST00000668751.1:ENST00000666632.1:ENST00000664732.1:ENST00000662007.1:ENST00000641158.1:ENST00000664994.1:ENST00000669884.1:ENST00000642133.1:ENST00000656380.1:ENST00000641055.1:ENST00000662578.1:ENST00000661668.1:ENST00000658347.1:ENST00000661029.1:ENST00000651548.2:ENST00000669360.1:ENST00000653490.1:ENST00000656942.1:ENST00000666456.1:ENST00000668276.1:ENST00000671595.1:ENST00000660290.1	lncRNA	lncRNA	lncRNA	lncRNA	2	39	2	2.04358	3.344075	4.64457	0.0329533	0.012652	0.145171	0.0926667
chr7	140030373	140030472	3658917	0	-	0.484848	(0.476,0.515]	chr7	339580	13	INTRON	INTRON	PARP12	ENSG00000059378.13	ENST00000263549.8:ENST00000473341.5:ENST00000488726.5:ENST00000489809.5:ENST00000491598.5:ENST00000466597.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	114	2	2.57415	3.344005	4.11386	9.37618e-4	4.0075e-5	0.0280776	0.00513517
chr7	6042432	6042532	3476072	0	-	0.3	(0.28,0.32]	chr7	325199	1	SS5_PROX	SS5_PROX:INTRON	EIF2AK1	ENSG00000086232.13	ENST00000199389.11:ENST00000495565.5:ENST00000474029.5:ENST00000470168.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	43	2	2.0243	3.343945	4.66359	0.0364967	0.0193496	0.153759	0.108861
chr7	158641266	158641364	3688123	0	-	0.295918	(0.28,0.32]	chr7	342109	16	UTR3	UTR3:EXON_MRNA:INTRON	NCAPG2	ENSG00000146918.20	ENST00000356309.8:ENST00000432615.5:ENST00000409423.5:ENST00000441982.5:ENST00000467785.5:ENST00000409339.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	43	2	2.0243	3.343945	4.66359	0.0364967	0.0193496	0.153759	0.108861
chr10	21874200	21874299	4577380	0	-	0.484848	(0.476,0.515]	chr10	421906	84	INTRON	INTRON	DNAJC1	ENSG00000136770.11	ENST00000376980.8	protein_coding	protein_coding	protein_coding	protein_coding	2	62	2	2.9435	3.343915	3.74433	0.00929849	2.85053e-4	0.0817766	0.0150568
chr1	23025405	23025505	43817	0	+	0.54	(0.515,0.57]	chr1	5252	51	INTRON	INTRON	KDM1A	ENSG00000004487.18	ENST00000692214.1:ENST00000686934.1:ENST00000689853.1:ENST00000465864.2:ENST00000691256.1:ENST00000688122.1:ENST00000692056.1:ENST00000692853.1:ENST00000689366.1:ENST00000686270.1:ENST00000685102.1:ENST00000690627.1:ENST00000686771.1:ENST00000692209.1:ENST00000686339.1:ENST00000691813.1:ENST00000693156.1:ENST00000688235.1:ENST00000692975.1:ENST00000687202.1:ENST00000691682.1:ENST00000691404.1:ENST00000691694.1:ENST00000688680.1:ENST00000356634.7:ENST00000400181.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	41	2	2.00468	3.34389	4.6831	0.0166344	0.00471288	0.110511	0.0600108
chr1	229330744	229330844	652491	0	-	0.54	(0.515,0.57]	chr1	77248	28	INTRON	INTRON	CCSAP	ENSG00000154429.11	ENST00000366687.5:ENST00000284617.7:ENST00000366686.1:ENST00000483092.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	41	2	2.00468	3.34389	4.6831	0.0166344	0.00471288	0.110511	0.0600108
chr22	20719617	20719715	7558240	0	-	0.357143	(0.35,0.378]	chr22	772989	4	INTRON	INTRON	PI4KA	ENSG00000241973.11	ENST00000255882.11:ENST00000492581.5:ENST00000477245.5:ENST00000466772.5:ENST00000399213.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	39	2	1.82887	3.343785	4.8587	0.0584878	0.00695662	0.189395	0.0718189
chr3	69821718	69821818	1449201	0	+	0.36	(0.35,0.378]	chr3	152789	223	INTRON	INTRON	MITF	ENSG00000187098.18	ENST00000687384.1:ENST00000693031.1:ENST00000352241.9:ENST00000642352.1:ENST00000495741.1:ENST00000429090.5:ENST00000433517.5:ENST00000472437.5:ENST00000448226.9:ENST00000689390.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	39	2	1.82887	3.343785	4.8587	0.0584878	0.00695662	0.189395	0.0718189
chr7	133068042	133068142	3645749	0	-	0.5	(0.476,0.515]	chr7	338880	161	INTRON	INTRON	CHCHD3	ENSG00000106554.13	ENST00000262570.10:ENST00000448878.6:ENST00000423635.5:ENST00000481152.2:ENST00000457942.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	110	2	3.27004	3.343755	3.41747	2.20887e-4	1.45317e-4	0.0130309	0.0110154
chr4	73174282	73174382	2159980	0	-	0.3	(0.28,0.32]	chr4	212788	48	INTRON	INTRON	ANKRD17	ENSG00000132466.20	ENST00000358602.9:ENST00000558247.5:ENST00000330838.10:ENST00000509867.6:ENST00000561029.1:ENST00000559367.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	77	2	3.00395	3.343745	3.68354	0.0101329	5.5135e-4	0.0850389	0.0213455
chr7	132954929	132955029	3644612	0	-	0.45	(0.44,0.476]	chr7	338848	676	INTRON	INTRON	CHCHD3	ENSG00000106554.13	ENST00000262570.10:ENST00000448878.6:ENST00000496427.5:ENST00000423635.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	110	2	3.34209	3.34373	3.34537	2.18713e-4	1.47653e-4	0.0135522	0.0105526
chr20	50086546	50086646	7353687	0	-	0.41	(0.408,0.44]	chr20	749863	19	INTRON	INTRON	UBE2V1	ENSG00000244687.13	ENST00000340309.7:ENST00000371677.7:ENST00000415862.6:ENST00000557021.5:ENST00000617119.4:ENST00000625172.3:ENST00000396059.7:ENST00000371674.8:ENST00000371657.9:ENST00000483534.5:ENST00000492371.6:ENST00000486653.5:ENST00000490555.1:ENST00000493090.5:ENST00000467839.5:ENST00000472923.5:ENST00000432266.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	51	2	1.55035	3.343685	5.13702	0.0455214	0.00202889	0.164236	0.04086
chr6	20863068	20863168	2831677	0	+	0.41	(0.408,0.44]	chr6	265679	165	INTRON	INTRON	CDKAL1	ENSG00000145996.11	ENST00000274695.8:ENST00000378610.1	protein_coding	protein_coding	protein_coding	protein_coding	4	51	2	1.55035	3.343685	5.13702	0.0455214	0.00202889	0.164236	0.04086
chr1	1473087	1473186	1578	0	+	0.464646	(0.44,0.476]	chr1	364	6	INTRON	INTRON	ATAD3B	ENSG00000160072.20	ENST00000673477.1:ENST00000308647.8	protein_coding	protein_coding	protein_coding	protein_coding	5	119	2	2.78545	3.3435449999999998	3.90164	3.37024e-4	1.25572e-4	0.0170609	0.00957656
chr6	147287995	147288095	2989550	0	+	0.5	(0.476,0.515]	chr6	280037	94	INTRON	INTRON	STXBP5	ENSG00000164506.15	ENST00000321680.11:ENST00000367481.7:ENST00000546097.5:ENST00000367480.7	protein_coding	protein_coding	protein_coding	protein_coding	2	62	2	3.19119	3.3435300000000003	3.49587	0.00325748	0.00120011	0.0524329	0.0315806
chr1	65308244	65308344	136076	0	+	0.46	(0.44,0.476]	chr1	15346	430	INTRON	INTRON	DNAJC6	ENSG00000116675.16	ENST00000463018.5:ENST00000494710.6:ENST00000263441.11:ENST00000395325.7:ENST00000483402.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	158	2	3.29305	3.343495	3.39394	6.05237e-5	1.86601e-5	0.00683137	0.00329969
chr12	56113561	56113657	5145682	0	+	0.489583	(0.476,0.515]	chr12	486195	8	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	PA2G4	ENSG00000170515.14	ENST00000552766.5:ENST00000303305.11	protein_coding	protein_coding	protein_coding	protein_coding	6	70	2	1.50655	3.34347	5.18039	0.0316424	6.58744e-4	0.13151	0.0232396
chr6	154784685	154784784	3002332	0	+	0.444444	(0.44,0.476]	chr6	280749	63	INTRON	INTRON	SCAF8	ENSG00000213079.10	ENST00000367186.7:ENST00000417268.3:ENST00000461219.5:ENST00000367178.8:ENST00000464628.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	40	2	1.9039	3.3434150000000002	4.78293	0.0501498	0.00292033	0.156383	0.0494641
chr1	235136473	235136573	661899	0	-	0.42	(0.408,0.44]	chr1	78363	4	SS3_PROX	SS3_PROX:INTRON	RBM34:ARID4B	ENSG00000188739.15:ENSG00000054267.22	ENST00000408888.8:ENST00000474953.5:ENST00000447801.5:ENST00000474086.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	37	2	2.00768	3.34331	4.67894	0.035843	0.0087648	0.152216	0.0788605
chr14	58294711	58294811	5904711	0	-	0.41	(0.408,0.44]	chr14	560849	15	EXON_LNCRNA	EXON_LNCRNA:INTRON	PSMA3-AS1	ENSG00000257621.9	ENST00000554360.5:ENST00000556002.5:ENST00000555275.5:ENST00000554378.5:ENST00000555707.5:ENST00000556400.5:ENST00000557660.5:ENST00000553657.5:ENST00000555037.1:ENST00000551597.6:ENST00000554309.1	lncRNA	lncRNA	lncRNA	lncRNA	2	37	2	2.00768	3.34331	4.67894	0.035843	0.0087648	0.152216	0.0788605
chr21	44963053	44963153	7417692	0	+	0.43	(0.408,0.44]	chr21	756231	25	INTRON	INTRON	SLX9	ENSG00000160256.13	ENST00000397826.7:ENST00000458015.1:ENST00000291634.11:ENST00000479127.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	37	2	2.00768	3.34331	4.67894	0.035843	0.0087648	0.152216	0.0788605
chr5	69315244	69315344	2636743	0	-	0.5	(0.476,0.515]	chr5	250448	8	INTRON	INTRON	CCDC125	ENSG00000183323.13	ENST00000396496.7:ENST00000396499.5:ENST00000460090.5:ENST00000383374.6:ENST00000511257.1:ENST00000512045.5:ENST00000513172.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	37	2	1.99341	3.343305	4.6932	0.037389	0.00753088	0.155878	0.074841
chr9	120516656	120516756	4333240	0	-	0.49	(0.476,0.515]	chr9	398085	248	INTRON	INTRON	CDK5RAP2	ENSG00000136861.19	ENST00000349780.9:ENST00000360190.8:ENST00000687279.1:ENST00000687633.1:ENST00000684780.1:ENST00000687311.1:ENST00000690814.1:ENST00000686842.1:ENST00000693714.1:ENST00000693386.1:ENST00000692746.1:ENST00000686376.1:ENST00000692155.1:ENST00000690646.1:ENST00000693433.1:ENST00000688923.1:ENST00000473282.6:ENST00000480112.5:ENST00000685866.1:ENST00000689688.1:ENST00000416449.6:ENST00000691504.1:ENST00000360822.8:ENST00000693728.1:ENST00000483412.5:ENST00000690474.1:ENST00000693137.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	37	2	1.99341	3.343305	4.6932	0.037389	0.00753088	0.155878	0.074841
chr1	29088299	29088398	60723	0	+	0.515152	(0.476,0.515]	chr1	7763	38	INTRON	INTRON	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000373798.5:ENST00000649674.1:ENST00000343067.9:ENST00000349460.9:ENST00000646871.1:ENST00000488277.1:ENST00000490308.2:ENST00000650132.1:ENST00000649992.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	37	2	1.91817	3.34322	4.76827	0.0459211	0.00600704	0.164984	0.0674604
chr15	28243114	28243212	6123248	0	-	0.479592	(0.476,0.515]	chr15	583285	40	INTRON	INTRON	HERC2	ENSG00000128731.18	ENST00000261609.13	protein_coding	protein_coding	protein_coding	protein_coding	2	37	2	1.91817	3.34322	4.76827	0.0459211	0.00600704	0.164984	0.0674604
chr17	8554716	8554815	6721277	0	-	0.494949	(0.476,0.515]	chr17	659638	3	INTRON	INTRON	MYH10	ENSG00000133026.14	ENST00000379980.8:ENST00000269243.8:ENST00000688902.1:ENST00000684843.1:ENST00000687178.1:ENST00000692526.1:ENST00000688497.1:ENST00000685418.1:ENST00000693441.1:ENST00000686654.1:ENST00000360416.8:ENST00000691566.1:ENST00000686521.1:ENST00000692077.1:ENST00000686956.1:ENST00000465458.2:ENST00000690895.1:ENST00000690548.1:ENST00000692894.1:ENST00000687661.1:ENST00000693704.1:ENST00000472728.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	37	2	1.91817	3.34322	4.76827	0.0459211	0.00600704	0.164984	0.0674604
chr2	64136827	64136927	1140466	0	-	0.48	(0.476,0.515]	chr2	122090	281	INTRON	INTRON	PELI1	ENSG00000197329.12	ENST00000358912.5:ENST00000466177.6:ENST00000494203.1:ENST00000468869.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	37	2	1.91817	3.34322	4.76827	0.0459211	0.00600704	0.164984	0.0674604
chr21	37459104	37459204	7407154	0	+	0.42	(0.408,0.44]	chr21	754898	24	INTRON	INTRON	DYRK1A	ENSG00000157540.22	ENST00000646523.1:ENST00000647425.1:ENST00000647188.2:ENST00000647504.1:ENST00000644942.1:ENST00000338785.8:ENST00000643624.1:ENST00000643551.1:ENST00000426672.6:ENST00000398960.7:ENST00000646548.1:ENST00000645424.1:ENST00000643854.1:ENST00000455097.6:ENST00000642309.1:ENST00000645774.1:ENST00000398956.2	protein_coding	protein_coding	protein_coding	protein_coding	2	37	2	1.93243	3.343205	4.75398	0.0441194	0.00703931	0.162255	0.0718189
chr6	79036849	79036949	3141664	0	-	0.43	(0.408,0.44]	chr6	292872	103	INTRON	INTRON	PHIP	ENSG00000146247.14	ENST00000275034.5	protein_coding	protein_coding	protein_coding	protein_coding	2	37	2	1.93243	3.343205	4.75398	0.0441194	0.00703931	0.162255	0.0718189
chr7	121000076	121000176	3393751	0	+	0.43	(0.408,0.44]	chr7	317676	56	INTRON	INTRON	CPED1	ENSG00000106034.18	ENST00000340646.9:ENST00000310396.10:ENST00000428526.5:ENST00000495036.5:ENST00000450913.6:ENST00000520801.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	37	2	1.93243	3.343205	4.75398	0.0441194	0.00703931	0.162255	0.0718189
chr9	131418911	131419011	4217218	0	+	0.41	(0.408,0.44]	chr9	386720	243	INTRON	INTRON	PRRC2B	ENSG00000288701.1	ENST00000682525.1:ENST00000684596.1:ENST00000683519.1:ENST00000682501.1	protein_coding	protein_coding	protein_coding	protein_coding	2	37	2	1.93243	3.343205	4.75398	0.0441194	0.00703931	0.162255	0.0718189
chr6	15246256	15246350	2822946	0	+	0.329787	(0.32,0.35]	chr6	265182	3	UTR5	UTR5:EXON_MRNA	JARID2	ENSG00000008083.14	ENST00000341776.7	protein_coding	protein_coding	protein_coding	protein_coding	25	701	2	3.24676	3.343135	3.43951	1.07173e-6	1.29144e-7	6.3737e-4	1.62193e-4
chr3	37081848	37081947	1655669	0	-	0.353535	(0.35,0.378]	chr3	169908	64	INTRON	INTRON	LRRFIP2	ENSG00000093167.18	ENST00000336686.9:ENST00000354379.8:ENST00000421276.6:ENST00000396428.6:ENST00000440230.5:ENST00000440742.2:ENST00000416425.5	protein_coding	protein_coding	protein_coding	protein_coding	5	60	2	1.47599	3.3430850000000003	5.21018	0.0425671	0.00228003	0.162011	0.0426265
chr5	141569735	141569834	2739667	0	-	0.262626	[0,0.28]	chr5	258073	92	INTRON	INTRON	DIAPH1	ENSG00000131504.18	ENST00000647433.1:ENST00000389054.8:ENST00000518047.5	protein_coding	protein_coding	protein_coding	protein_coding	3	120	2	2.98683	3.3429149999999996	3.699	0.00234564	6.64135e-4	0.0434875	0.0233423
chr5	69115925	69116021	2379808	0	+	0.375	(0.35,0.378]	chr5	229099	1	CDS	CDS:EXON_MRNA	SLC30A5	ENSG00000145740.20	ENST00000396591.8:ENST00000507354.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	90	2	2.59656	3.342765	4.08897	0.00638551	5.3761e-5	0.0693551	0.00600135
chr9	130799853	130799953	4214723	0	+	0.41	(0.408,0.44]	chr9	386427	850	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000393293.4	protein_coding	protein_coding	protein_coding	protein_coding	3	83	2	2.86612	3.3427	3.81928	0.00157924	3.06208e-4	0.0366789	0.0161362
chr2	39053060	39053158	1101652	0	-	0.571429	(0.57,1]	chr2	118279	13	INTRON	INTRON	SOS1	ENSG00000115904.15	ENST00000692089.1:ENST00000402219.8:ENST00000690876.1:ENST00000395038.6:ENST00000691229.1:ENST00000689668.1:ENST00000690679.1:ENST00000461545.2:ENST00000685782.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	54	2	3.05625	3.342675	3.6291	3.02868e-4	8.84921e-5	0.0160895	0.00791674
chr12	55975623	55975721	5144877	0	+	0.459184	(0.44,0.476]	chr12	485912	11	INTRON	INTRON	RAB5B	ENSG00000111540.16	ENST00000553116.5:ENST00000549505.5:ENST00000360299.10:ENST00000546810.1:ENST00000548068.5:ENST00000549915.5:ENST00000448789.2:ENST00000551459.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	30	2	2.46135	3.3426400000000003	4.22393	0.0374637	0.0162322	0.140008	0.109464
chr2	61460765	61460864	1130454	0	-	0.464646	(0.44,0.476]	chr2	121499	396	INTRON	INTRON	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000453133.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	30	2	2.46135	3.3426400000000003	4.22393	0.0374637	0.0162322	0.140008	0.109464
chr8	143289999	143290081	3879516	0	+	0.451219	(0.44,0.476]	chr8	356370	2	SS5_PROX	SS5_PROX:INTRON	ZNF696	ENSG00000185730.8	ENST00000523891.1	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	2.46135	3.3426400000000003	4.22393	0.0374637	0.0162322	0.140008	0.109464
chr16	1784361	1784459	6276267	0	+	0.571429	(0.57,1]	chr16	599731	3	SS5_PROX	SS5_PROX:INTRON	NUBP2	ENSG00000095906.17	ENST00000567700.5:ENST00000568834.5:ENST00000566447.5:ENST00000566090.5:ENST00000262302.14:ENST00000563136.5:ENST00000565987.5:ENST00000568287.5:ENST00000565603.5:ENST00000569898.5:ENST00000565134.5:ENST00000564227.5:ENST00000562263.5:ENST00000568706.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	94	2	3.29746	3.342585	3.3877100000000002	9.08966e-6	3.5402e-6	0.00231903	0.0012234
chr3	172041622	172041722	1559563	0	+	0.48	(0.476,0.515]	chr3	161523	6	INTRON	INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000421757.5:ENST00000469491.5:ENST00000336824.8:ENST00000423424.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	131	2	3.32395	3.3424899999999997	3.36103	2.34553e-4	2.34907e-5	0.0140266	0.00379453
chr20	58364741	58364839	7289513	0	+	0.510204	(0.476,0.515]	chr20	741657	52	UTR3	UTR3:EXON_MRNA	RAB22A	ENSG00000124209.4	ENST00000244040.4	protein_coding	protein_coding	protein_coding	protein_coding	3	48	2	1.69138	3.3424000000000005	4.99342	0.0481165	0.00139274	0.153019	0.0341261
chr16	75028265	75028365	6389711	0	+	0.44	(0.408,0.44]	chr16	614482	255	INTRON	INTRON	ZNRF1	ENSG00000186187.12	ENST00000335325.9:ENST00000320619.10:ENST00000567962.5:ENST00000566250.5:ENST00000564320.1:ENST00000568511.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	220	2	2.94604	3.342385	3.73873	1.81673e-5	4.52667e-6	0.00326068	0.00156767
chr12	103948041	103948136	5208526	0	+	0.515789	(0.515,0.57]	chr12	492975	5	UTR3	UTR3:EXON_MRNA:INTRON	HSP90B1	ENSG00000166598.16	ENST00000550595.2:ENST00000680899.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	129	2	2.87009	3.34236	3.81463	1.49863e-4	6.3757e-6	0.011202	0.0017789
chr15	50365021	50365121	6022141	0	+	0.4	(0.378,0.408]	chr15	573922	102	EXON_LNCRNA	EXON_LNCRNA:INTRON	GABPB1-AS1	ENSG00000244879.9	ENST00000668321.1:ENST00000499624.3:ENST00000648591.1:ENST00000558593.1	lncRNA	lncRNA	lncRNA	lncRNA	5	116	2	2.59919	3.342235	4.08528	6.41208e-4	9.30621e-5	0.0228915	0.00857086
chr5	34203617	34203717	2600123	0	-	0.4	(0.378,0.408]	chr5	247061	23	INTRON	INTRON	GUSBP18	ENSG00000215158.9	ENST00000507274.1:ENST00000508395.5:ENST00000512782.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	3	85	2	3.2479	3.342175	3.43645	0.00171162	2.54231e-4	0.037419	0.0142045
chr3	19963249	19963349	1376197	0	+	0.32	(0.28,0.32]	chr3	145051	100	INTRON	INTRON	RAB5A	ENSG00000144566.11	ENST00000273047.9:ENST00000412966.5:ENST00000446547.5:ENST00000422242.1:ENST00000469122.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	80	2	2.73077	3.34216	3.95355	0.0220748	1.55324e-4	0.115395	0.0106835
chr19	57856333	57856433	7106100	0	+	0.41	(0.408,0.44]	chr19	713237	1	SS5_PROX	SS5_PROX:INTRON	ENSG00000268750:ZNF587	ENSG00000268750.7:ENSG00000198466.12	ENST00000596498.2:ENST00000593873.6:ENST00000603271.1:ENST00000598031.1:ENST00000604231.1:ENST00000339656.8:ENST00000423137.1:ENST00000419854.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	62	2	3.31257	3.342095	3.37162	0.00208674	0.00198621	0.0411801	0.0411469
chr1	180706697	180706797	270343	0	+	0.45	(0.44,0.476]	chr1	31620	239	INTRON	INTRON	XPR1	ENSG00000143324.14	ENST00000367590.9:ENST00000367589.3	protein_coding	protein_coding	protein_coding	protein_coding	2	37	2	2.0776	3.342035	4.60647	0.0292951	0.0102339	0.141862	0.0850389
chr8	22463954	22464054	3713548	0	+	0.46	(0.44,0.476]	chr8	344875	221	INTRON	INTRON	PPP3CC	ENSG00000120910.15	ENST00000518852.5:ENST00000240139.10:ENST00000289963.12:ENST00000397775.7:ENST00000522000.1	protein_coding	protein_coding	protein_coding	protein_coding	2	37	2	2.0776	3.342035	4.60647	0.0292951	0.0102339	0.141862	0.0850389
chr9	15488011	15488108	4235850	0	-	0.443299	(0.44,0.476]	chr9	389312	7	INTRON	INTRON	PSIP1	ENSG00000164985.15	ENST00000380738.8:ENST00000380733.9:ENST00000380716.8:ENST00000380715.5:ENST00000397519.6:ENST00000487363.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	37	2	2.0776	3.342035	4.60647	0.0292951	0.0102339	0.141862	0.0850389
chr7	138497390	138497490	3435012	0	+	0.43	(0.408,0.44]	chr7	319959	357	INTRON	INTRON	TRIM24	ENSG00000122779.18	ENST00000343526.9:ENST00000415680.6:ENST00000497516.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	45	2	1.93002	3.342	4.75398	0.022095	0.00703931	0.123903	0.0718189
chr2	62206535	62206635	790105	0	+	0.4	(0.378,0.408]	chr2	88695	98	INTRON	INTRON	B3GNT2	ENSG00000170340.11	ENST00000301998.5	protein_coding	protein_coding	protein_coding	protein_coding	3	46	2	1.94559	3.34199	4.73839	0.0211434	0.00837252	0.122929	0.0774402
chr18	791257	791356	6940495	0	-	0.333333	(0.32,0.35]	chr18	686525	29	INTRON	INTRON	YES1	ENSG00000176105.14	ENST00000584307.5:ENST00000314574.5:ENST00000577611.1:ENST00000581960.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	45	2	1.88909	3.3419549999999996	4.79482	0.0553737	0.00447781	0.165463	0.0610799
chr13	52475537	52475636	5504264	0	+	0.323232	(0.32,0.35]	chr13	526687	5	UTR3	UTR3:EXON_MRNA	CKAP2	ENSG00000136108.15	ENST00000378037.9:ENST00000258607.10:ENST00000490903.5	protein_coding	protein_coding	protein_coding	protein_coding	4	56	2	1.49965	3.3419	5.18415	0.0542985	0.00333629	0.182243	0.0512081
chr7	129624790	129624889	3412252	0	+	0.343434	(0.32,0.35]	chr7	319009	126	INTRON	INTRON	NRF1	ENSG00000106459.15	ENST00000393232.6:ENST00000477428.5:ENST00000454688.5:ENST00000223190.8:ENST00000311967.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	56	2	1.49965	3.3419	5.18415	0.0542985	0.00333629	0.182243	0.0512081
chr5	39023235	39023335	2605136	0	-	0.33	(0.32,0.35]	chr5	247896	17	INTRON	INTRON	RICTOR	ENSG00000164327.13	ENST00000357387.8:ENST00000511516.5:ENST00000296782.9:ENST00000510711.5:ENST00000513566.1:ENST00000514735.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	57	2	1.72405	3.34188	4.95971	0.0275418	0.00663522	0.137011	0.0703181
chr1	23074598	23074695	44328	0	+	0.360825	(0.35,0.378]	chr1	5322	2	UTR3	UTR3:EXON_MRNA:INTRON	KDM1A	ENSG00000004487.18	ENST00000692214.1:ENST00000686934.1:ENST00000689853.1:ENST00000465864.2:ENST00000691256.1:ENST00000688122.1:ENST00000692056.1:ENST00000692853.1:ENST00000689366.1:ENST00000686270.1:ENST00000685102.1:ENST00000690627.1:ENST00000686771.1:ENST00000692209.1:ENST00000686339.1:ENST00000691813.1:ENST00000693156.1:ENST00000688235.1:ENST00000692975.1:ENST00000687202.1:ENST00000691682.1:ENST00000691404.1:ENST00000691694.1:ENST00000688680.1:ENST00000356634.7:ENST00000400181.9:ENST00000689677.1:ENST00000686793.1:ENST00000689971.1:ENST00000688943.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	29	2	2.48657	3.3418349999999997	4.1971	0.0367539	0.032907	0.145164	0.138959
chr16	23498567	23498667	6464468	0	-	0.36	(0.35,0.378]	chr16	623900	24	INTRON	INTRON	GGA2	ENSG00000103365.15	ENST00000309859.8:ENST00000567468.5:ENST00000570111.5:ENST00000568799.1:ENST00000563494.5:ENST00000569300.5:ENST00000569189.2:ENST00000563047.1:ENST00000562944.5:ENST00000562117.1:ENST00000566547.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	29	2	2.48657	3.3418349999999997	4.1971	0.0367539	0.032907	0.145164	0.138959
chr2	174098031	174098131	1269343	0	-	0.36	(0.35,0.378]	chr2	134263	156	INTRON	INTRON	OLA1	ENSG00000138430.16	ENST00000284719.8:ENST00000344357.9:ENST00000428402.6:ENST00000409546.5:ENST00000392560.6:ENST00000462000.1:ENST00000429575.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	29	2	2.48657	3.3418349999999997	4.1971	0.0367539	0.032907	0.145164	0.138959
chr5	178606931	178607025	2778823	0	-	0.361702	(0.35,0.378]	chr5	262125	7	INTRON	INTRON	CLK4	ENSG00000113240.14	ENST00000520878.5:ENST00000316308.9:ENST00000522136.5:ENST00000521621.5:ENST00000519132.5:ENST00000519583.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	29	2	2.48657	3.3418349999999997	4.1971	0.0367539	0.032907	0.145164	0.138959
chr6	99413978	99414071	3166031	0	-	0.354839	(0.35,0.378]	chr6	295323	9	INTRON	INTRON	PNISR	ENSG00000132424.17	ENST00000681615.1:ENST00000369239.10:ENST00000647811.1:ENST00000481229.2:ENST00000679525.1:ENST00000681611.1:ENST00000438806.5:ENST00000478777.5:ENST00000492294.5:ENST00000498075.1:ENST00000466057.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	29	2	2.48657	3.3418349999999997	4.1971	0.0367539	0.032907	0.145164	0.138959
chr2	113948135	113948234	854836	0	+	0.444444	(0.44,0.476]	chr2	95943	54	INTRON	INTRON	ACTR3	ENSG00000115091.12	ENST00000263238.7:ENST00000535589.3	protein_coding	protein_coding	protein_coding	protein_coding	7	68	2	1.4317	3.341745	5.25179	0.0304668	0.00124521	0.143385	0.0322969
chr7	102374626	102374725	3371181	0	+	0.464646	(0.44,0.476]	chr7	315430	82	INTRON	INTRON	PRKRIP1:ENSG00000239969	ENSG00000128563.13:ENSG00000239969.6	ENST00000477886.5:ENST00000469763.5:ENST00000482549.5:ENST00000496391.5:ENST00000484974.5:ENST00000492837.1:ENST00000482465.5	protein_coding	protein_coding	protein_coding:transcribed_unprocessed_pseudogene	protein_coding:processed_transcript	2	37	2	1.85146	3.34174	4.83202	0.0545846	0.00525002	0.182529	0.0633615
chr7	158775981	158776081	3689272	0	-	0.46	(0.44,0.476]	chr7	342393	22	INTRON	INTRON	ESYT2	ENSG00000117868.18	ENST00000251527.10:ENST00000275418.13:ENST00000652148.1:ENST00000483958.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	37	2	1.85146	3.34174	4.83202	0.0545846	0.00525002	0.182529	0.0633615
chr6	35854666	35854766	3088140	0	-	0.31	(0.28,0.32]	chr6	288820	117	INTRON	INTRON	SRPK1	ENSG00000096063.16	ENST00000373825.7:ENST00000423325.6:ENST00000346162.10:ENST00000361690.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	80	2	3.07744	3.3415600000000003	3.60568	0.00604536	0.00127168	0.0700813	0.032635
chr17	75143775	75143874	6835972	0	-	0.484848	(0.476,0.515]	chr17	675456	72	INTRON	INTRON	JPT1	ENSG00000189159.16	ENST00000409753.8:ENST00000476258.5:ENST00000482348.5:ENST00000304834.11:ENST00000356033.8:ENST00000470924.5:ENST00000481094.1:ENST00000481647.5:ENST00000580380.1:ENST00000581874.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	134	2	2.61871	3.341445	4.06418	0.00174257	1.72826e-6	0.0375363	7.91759e-4
chr20	49175262	49175361	7352249	0	-	0.525253	(0.515,0.57]	chr20	749691	6	INTRON	INTRON	STAU1	ENSG00000124214.21	ENST00000371856.7:ENST00000371828.7:ENST00000340954.11:ENST00000347458.9:ENST00000360426.8:ENST00000371792.5:ENST00000371802.5:ENST00000437404.2	protein_coding	protein_coding	protein_coding	protein_coding	4	47	2	1.84511	3.341375	4.83764	0.0167182	0.00279527	0.110511	0.0469265
chr8	48009270	48009370	3752245	0	+	0.49	(0.476,0.515]	chr8	349044	3	INTRON	INTRON	UBE2V2	ENSG00000169139.12	ENST00000523432.5:ENST00000521346.5:ENST00000523111.7:ENST00000518360.5:ENST00000517630.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	130	2	2.59842	3.341165	4.08391	4.33261e-4	4.74551e-5	0.0190829	0.00562068
chr16	28100382	28100478	6467312	0	-	0.447917	(0.44,0.476]	chr16	624437	14	INTRON	INTRON	XPO6	ENSG00000169180.12	ENST00000304658.10:ENST00000565698.5:ENST00000568065.5	protein_coding	protein_coding	protein_coding	protein_coding	3	83	2	2.55649	3.341055	4.12562	0.00670547	3.66727e-5	0.0707084	0.00484751
chr12	110321991	110322091	5226510	0	+	0.57	(0.515,0.57]	chr12	495250	249	INTRON	INTRON	ATP2A2	ENSG00000174437.18	ENST00000308664.10:ENST00000539276.7:ENST00000377685.9:ENST00000548169.2:ENST00000550248.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	53	2	3.25547	3.340955	3.42644	0.00261721	0.00106731	0.0455413	0.0300133
chr22	40401239	40401313	7520367	0	+	0.405405	(0.378,0.408]	chr22	768337	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SGSM3	ENSG00000100359.21	ENST00000457767.5:ENST00000248929.14:ENST00000485962.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	64	2	2.01851	3.340945	4.66338	0.0103469	0.00559022	0.0850389	0.0678837
chr1	212994842	212994941	634877	0	-	0.262626	[0,0.28]	chr1	74989	28	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ANGEL2	ENSG00000174606.14	ENST00000366962.8:ENST00000360506.6:ENST00000535388.2:ENST00000473303.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	38	2	2.20927	3.3409050000000002	4.47254	0.0794763	0.020991	0.19979	0.122348
chr5	138793942	138794042	2497715	0	+	0.26	[0,0.28]	chr5	238725	25	INTRON	INTRON	CTNNA1	ENSG00000044115.21	ENST00000517980.5:ENST00000522227.5:ENST00000523912.5:ENST00000627109.2:ENST00000521724.5:ENST00000302763.12:ENST00000518910.5:ENST00000519309.5:ENST00000519113.5:ENST00000520158.5:ENST00000518825.5:ENST00000518585.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	38	2	2.20927	3.3409050000000002	4.47254	0.0794763	0.020991	0.19979	0.122348
chr1	27471399	27471499	406577	0	-	0.48	(0.476,0.515]	chr1	48986	421	INTRON	INTRON	WASF2	ENSG00000158195.11	ENST00000618852.5:ENST00000536657.1	protein_coding	protein_coding	protein_coding	protein_coding	7	137	2	2.20314	3.3408350000000002	4.47853	0.00191826	4.44592e-6	0.0395832	0.00142022
chr1	172583923	172584022	255216	0	+	0.343434	(0.32,0.35]	chr1	30433	43	INTRON	INTRON	SUCO	ENSG00000094975.14	ENST00000367723.8:ENST00000608151.5:ENST00000616058.4:ENST00000263688.4:ENST00000610051.5	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	2.31405	3.3407999999999998	4.36755	0.0517107	0.0300552	0.176696	0.129138
chr1	229489454	229489554	653135	0	-	0.34	(0.32,0.35]	chr1	77364	1	SS5_PROX	SS5_PROX:INTRON	NUP133	ENSG00000069248.12	ENST00000261396.6	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	2.31405	3.3407999999999998	4.36755	0.0517107	0.0300552	0.176696	0.129138
chr12	15889030	15889129	5084189	0	+	0.333333	(0.32,0.35]	chr12	480523	50	INTRON	INTRON	STRAP	ENSG00000023734.11	ENST00000419869.7:ENST00000541731.1:ENST00000025399.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	30	2	2.31405	3.3407999999999998	4.36755	0.0517107	0.0300552	0.176696	0.129138
chr12	112348699	112348799	5417417	0	-	0.35	(0.32,0.35]	chr12	517670	286	INTRON	INTRON	HECTD4	ENSG00000173064.14	ENST00000550722.5:ENST00000377560.9:ENST00000682272.1:ENST00000550724.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	30	2	2.31405	3.3407999999999998	4.36755	0.0517107	0.0300552	0.176696	0.129138
chr2	271465	271565	685504	0	+	0.35	(0.32,0.35]	chr2	80417	2	SS3_PROX	SS3_PROX:INTRON	ACP1	ENSG00000143727.16	ENST00000272067.10:ENST00000413140.5:ENST00000442386.5:ENST00000407983.7:ENST00000439645.6:ENST00000405364.2:ENST00000405233.5:ENST00000480874.5:ENST00000272065.10:ENST00000453390.5:ENST00000484464.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	30	2	2.31405	3.3407999999999998	4.36755	0.0517107	0.0300552	0.176696	0.129138
chr20	63603392	63603492	7363076	0	-	0.34	(0.32,0.35]	chr20	751324	3	SS3_PROX	SS3_PROX:INTRON	GMEB2	ENSG00000101216.11	ENST00000266068.5:ENST00000370069.5:ENST00000370077.2	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	2.31405	3.3407999999999998	4.36755	0.0517107	0.0300552	0.176696	0.129138
chr4	2240946	2241019	2098039	0	-	0.328767	(0.32,0.35]	chr4	207588	1	UTR5	UTR5:EXON_MRNA	HAUS3	ENSG00000214367.9	ENST00000672739.1:ENST00000672725.1:ENST00000506763.5:ENST00000243706.8:ENST00000443786.3:ENST00000514395.1:ENST00000502440.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	30	2	2.31405	3.3407999999999998	4.36755	0.0517107	0.0300552	0.176696	0.129138
chr7	20208531	20208631	3497463	0	-	0.34	(0.32,0.35]	chr7	326599	95	INTRON	INTRON	MACC1	ENSG00000183742.13	ENST00000400331.10:ENST00000332878.8:ENST00000471019.1:ENST00000483317.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	30	2	2.31405	3.3407999999999998	4.36755	0.0517107	0.0300552	0.176696	0.129138
chr2	107624892	107624992	1204795	0	-	0.4	(0.378,0.408]	chr2	128506	824	INTRON	INTRON	LINC01885	ENSG00000237880.2	ENST00000654481.1	lncRNA	lncRNA	lncRNA	lncRNA	2	43	2	2.16303	3.340785	4.51854	0.0252473	0.00748824	0.12011	0.0772645
chr6	161050578	161050678	3025083	0	+	0.37	(0.35,0.378]	chr6	282325	2	INTRON	INTRON	MAP3K4	ENSG00000085511.20	ENST00000366919.6:ENST00000392142.9:ENST00000542952.5:ENST00000366920.6:ENST00000348824.11:ENST00000544041.5:ENST00000490904.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	47	2	1.82281	3.3407549999999997	4.8587	0.0316938	0.00695662	0.144635	0.0718189
chr9	112035519	112035618	4315376	0	-	0.464646	(0.44,0.476]	chr9	396871	31	EXON_LNCRNA	EXON_LNCRNA:INTRON	ENSG00000259953	ENSG00000259953.2	ENST00000658557.1:ENST00000563434.1:ENST00000568421.1	lncRNA	lncRNA	lncRNA	lncRNA	2	61	2	3.22192	3.340745	3.45957	0.00360821	0.00106385	0.0533855	0.0300133
chr1	52545936	52546036	458499	0	-	0.39	(0.378,0.408]	chr1	55111	69	INTRON	INTRON	TUT4	ENSG00000134744.14	ENST00000371544.7:ENST00000257177.9:ENST00000528642.5:ENST00000484723.6:ENST00000473856.5:ENST00000355809.4:ENST00000470626.1:ENST00000524582.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	28	2	2.36428	3.340635	4.31699	0.0441088	0.0250408	0.162255	0.12011
chr1	93523837	93523914	165201	0	+	0.402597	(0.378,0.408]	chr1	17879	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	FNBP1L	ENSG00000137942.18	ENST00000271234.13:ENST00000260506.12:ENST00000370253.6	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	2.36428	3.340635	4.31699	0.0441088	0.0250408	0.162255	0.12011
chr12	9423936	9424027	5264903	0	-	0.384615	(0.378,0.408]	chr12	501848	10	INTRON	INTRON	DDX12P	ENSG00000214826.5	ENST00000432996.2	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	1	28	2	2.36428	3.340635	4.31699	0.0441088	0.0250408	0.162255	0.12011
chr12	110723773	110723869	5411337	0	-	0.395833	(0.378,0.408]	chr12	516721	7	INTRON	INTRON	PPP1CC	ENSG00000186298.12	ENST00000335007.10:ENST00000340766.9:ENST00000550261.5:ENST00000551582.1:ENST00000553024.1:ENST00000546933.5:ENST00000550991.5:ENST00000551676.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	28	2	2.36428	3.340635	4.31699	0.0441088	0.0250408	0.162255	0.12011
chr13	45167010	45167109	5478743	0	+	0.393939	(0.378,0.408]	chr13	524950	148	INTRON	INTRON	GTF2F2	ENSG00000188342.12	ENST00000340473.8	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	2.36428	3.340635	4.31699	0.0441088	0.0250408	0.162255	0.12011
chr14	34979348	34979447	5869142	0	-	0.393939	(0.378,0.408]	chr14	557484	68	INTRON	INTRON	SRP54-AS1	ENSG00000258704.7	ENST00000692503.1:ENST00000690110.1:ENST00000690001.1:ENST00000688072.1:ENST00000693002.1:ENST00000556355.5:ENST00000555015.5:ENST00000693259.1:ENST00000636540.1:ENST00000556705.6:ENST00000691849.1:ENST00000686430.1:ENST00000686298.1:ENST00000688866.1:ENST00000689842.1:ENST00000554945.1	transcribed_unitary_pseudogene	processed_transcript	transcribed_unitary_pseudogene	processed_transcript:transcribed_unitary_pseudogene	1	28	2	2.36428	3.340635	4.31699	0.0441088	0.0250408	0.162255	0.12011
chr15	63754104	63754204	6200098	0	-	0.4	(0.378,0.408]	chr15	591400	2	SS5_PROX	SS5_PROX:INTRON	HERC1	ENSG00000103657.14	ENST00000443617.7:ENST00000561400.1:ENST00000559886.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	28	2	2.36428	3.340635	4.31699	0.0441088	0.0250408	0.162255	0.12011
chr17	62538435	62538535	6653484	0	+	0.38	(0.378,0.408]	chr17	649352	17	INTRON	INTRON	TLK2	ENSG00000146872.19	ENST00000582809.5:ENST00000684213.1:ENST00000583843.5:ENST00000582195.6:ENST00000682085.1:ENST00000580705.5:ENST00000346027.10:ENST00000326270.13:ENST00000682203.1:ENST00000343388.11:ENST00000683536.1:ENST00000684440.1:ENST00000684772.1:ENST00000682274.1:ENST00000682827.1:ENST00000682075.1:ENST00000683104.1:ENST00000684012.1:ENST00000581041.5:ENST00000684553.1:ENST00000683737.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	28	2	2.36428	3.340635	4.31699	0.0441088	0.0250408	0.162255	0.12011
chr18	79987839	79987939	6991020	0	-	0.38	(0.378,0.408]	chr18	692053	2	SS5_PROX	SS5_PROX:INTRON	TXNL4A	ENSG00000141759.15	ENST00000269601.10:ENST00000585474.5:ENST00000588162.1:ENST00000592957.1:ENST00000355491.5:ENST00000585769.5:ENST00000591711.5:ENST00000586825.1:ENST00000586295.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	28	2	2.36428	3.340635	4.31699	0.0441088	0.0250408	0.162255	0.12011
chr21	46281463	46281560	7471386	0	-	0.381443	(0.378,0.408]	chr21	761699	5	INTRON	INTRON	MCM3AP	ENSG00000160294.11	ENST00000397708.1:ENST00000291688.6	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	2.36428	3.340635	4.31699	0.0441088	0.0250408	0.162255	0.12011
chr22	16635842	16635941	7473705	0	+	0.383838	(0.378,0.408]	chr22	762000	126	INTRON	INTRON	TPTEP1	ENSG00000100181.22	ENST00000558085.6:ENST00000400593.6:ENST00000426585.5:ENST00000383140.7	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	1	28	2	2.36428	3.340635	4.31699	0.0441088	0.0250408	0.162255	0.12011
chr5	157824444	157824544	2758308	0	-	0.38	(0.378,0.408]	chr5	260304	65	INTRON	INTRON	CLINT1	ENSG00000113282.14	ENST00000523094.5:ENST00000411809.7:ENST00000530742.5:ENST00000523908.5	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	2.36428	3.340635	4.31699	0.0441088	0.0250408	0.162255	0.12011
chr7	111020352	111020452	3618685	0	-	0.4	(0.378,0.408]	chr7	337093	564	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	28	2	2.36428	3.340635	4.31699	0.0441088	0.0250408	0.162255	0.12011
chr8	42359514	42359612	3743815	0	+	0.397959	(0.378,0.408]	chr8	348232	17	INTRON	INTRON	POLB	ENSG00000070501.12	ENST00000520008.5:ENST00000518925.5:ENST00000265421.9:ENST00000522610.5:ENST00000519771.5:ENST00000524208.5:ENST00000521290.5:ENST00000519524.1:ENST00000518579.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	28	2	2.36428	3.340635	4.31699	0.0441088	0.0250408	0.162255	0.12011
chr9	123156914	123157014	4339346	0	-	0.38	(0.378,0.408]	chr9	398880	87	INTRON	INTRON	STRBP	ENSG00000165209.19	ENST00000348403.10:ENST00000447404.6:ENST00000360998.3:ENST00000407982.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	28	2	2.36428	3.340635	4.31699	0.0441088	0.0250408	0.162255	0.12011
chr9	125177475	125177574	4352302	0	-	0.40404	(0.378,0.408]	chr9	399581	51	INTRON	INTRON	PPP6C	ENSG00000119414.12	ENST00000373547.9:ENST00000415905.5:ENST00000451402.5:ENST00000456642.1	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	2.36428	3.340635	4.31699	0.0441088	0.0250408	0.162255	0.12011
chr1	212347697	212347792	308706	0	+	0.463158	(0.44,0.476]	chr1	35609	3	SS5_PROX	SS5_PROX:INTRON	PPP2R5A	ENSG00000066027.12	ENST00000261461.7:ENST00000537030.3	protein_coding	protein_coding	protein_coding	protein_coding	6	62	2	1.37831	3.340605	5.3029	0.0447298	0.00102616	0.163255	0.029231300000000002
chr8	31064088	31064188	3728238	0	+	0.29	(0.28,0.32]	chr8	346536	4	SS3_PROX	SS3_PROX:INTRON	WRN	ENSG00000165392.11	ENST00000650667.1:ENST00000298139.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	157	2	2.53463	3.340525	4.14642	6.24568e-4	1.29077e-4	0.0224805	0.0103343
chr11	61286730	61286830	4956043	0	-	0.6	(0.57,1]	chr11	465641	3	SS3_PROX	SS3_PROX:INTRON	VWCE	ENSG00000167992.14	ENST00000335613.10:ENST00000301770.10:ENST00000535599.1:ENST00000538579.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	25	2	2.23711	3.3403850000000004	4.44366	0.0172108	0.00210922	0.104099	0.0425419
chr21	46269609	46269706	7471262	0	-	0.618557	(0.57,1]	chr21	761661	17	INTRON	INTRON	MCM3AP	ENSG00000160294.11	ENST00000397708.1:ENST00000291688.6	protein_coding	protein_coding	protein_coding	protein_coding	2	25	2	2.23711	3.3403850000000004	4.44366	0.0172108	0.00210922	0.104099	0.0425419
chr7	136200790	136200889	3432262	0	+	0.363636	(0.35,0.378]	chr7	319917	230	INTRON	INTRON	ENSG00000232053	ENSG00000232053.7	ENST00000657456.1:ENST00000668062.1:ENST00000668668.1:ENST00000445293.6:ENST00000659747.1:ENST00000668896.1:ENST00000435996.1	lncRNA	lncRNA	lncRNA	lncRNA	2	40	2	2.2877	3.3403650000000003	4.39303	0.0237246	0.0155765	0.118716	0.109411
chr5	139300764	139300864	2499451	0	+	0.5	(0.476,0.515]	chr5	238913	9	INTRON	INTRON	MATR3	ENSG00000280987.4:ENSG00000015479.20	ENST00000509990.5:ENST00000506147.5:ENST00000512107.5:ENST00000361059.7:ENST00000394800.6:ENST00000502929.5:ENST00000504203.5:ENST00000514694.5:ENST00000509644.5:ENST00000505016.2:ENST00000502394.1:ENST00000512876.5:ENST00000513678.5:ENST00000513121.1:ENST00000504045.5:ENST00000504311.5:ENST00000502499.5:ENST00000510056.5:ENST00000511249.5:ENST00000394805.8:ENST00000507860.1:ENST00000509918.5:ENST00000503811.5:ENST00000511978.5:ENST00000618441.5:ENST00000508689.1:ENST00000514528.5:ENST00000504643.5:ENST00000514488.1:ENST00000503340.1:ENST00000504023.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	81	2	3.00507	3.340255	3.67544	8.38796e-4	5.51624e-4	0.0263691	0.0216014
chr16	81503492	81503592	6405586	0	+	0.48	(0.476,0.515]	chr16	615031	76	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6	protein_coding	protein_coding	protein_coding	protein_coding	2	63	2	3.07422	3.340245	3.60627	0.00506023	7.49088e-4	0.0646039	0.0251179
chr2	87465958	87466058	826026	0	+	0.48	(0.476,0.515]	chr2	92409	75	INTRON	INTRON	CYTOR:ENSG00000284879	ENSG00000222041.12:ENSG00000284879.1	ENST00000642796.1:ENST00000643589.1:ENST00000642451.1:ENST00000646386.1:ENST00000644478.1:ENST00000409139.6:ENST00000331944.10:ENST00000644125.1:ENST00000643743.1:ENST00000644577.1:ENST00000643276.1:ENST00000409898.2:ENST00000419680.6:ENST00000645257.1:ENST00000644976.1:ENST00000643070.1:ENST00000646855.1:ENST00000414584.1:ENST00000455131.5:ENST00000646636.1:ENST00000642293.1:ENST00000423846.5:ENST00000644040.1:ENST00000645138.1	lncRNA	lncRNA	lncRNA	lncRNA	15	379	2	3.28162	3.340235	3.39885	9.07465e-7	6.04138e-7	5.40145e-4	4.52668e-4
chr5	159192221	159192320	2759013	0	-	0.393939	(0.378,0.408]	chr5	260356	98	INTRON	INTRON	RNF145	ENSG00000145860.12	ENST00000424310.7:ENST00000519865.5:ENST00000274542.6:ENST00000611185.4:ENST00000521606.6:ENST00000518802.5:ENST00000520638.1:ENST00000520548.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	58	2	1.50417	3.34022	5.17627	0.0384675	0.00208234	0.159169	0.0411801
chr9	135949300	135949399	4372448	0	-	0.333333	(0.32,0.35]	chr9	402541	10	INTRON	INTRON	UBAC1	ENSG00000130560.9	ENST00000371756.4:ENST00000478485.1:ENST00000486258.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	175	2	3.06144	3.340115	3.61879	8.64149e-5	6.07668e-5	0.0083541	0.00644153
chr6	57152551	57152651	2878700	0	+	0.45	(0.44,0.476]	chr6	273311	2	SS5_PROX	SS5_PROX:INTRON	ZNF451	ENSG00000112200.17	ENST00000357489.7:ENST00000370706.9:ENST00000491832.6:ENST00000504603.1:ENST00000508548.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	51	2	1.65297	3.34	5.02703	0.0331814	0.00278015	0.145918	0.0469265
chr19	5062729	5062829	7004361	0	+	0.27	[0,0.28]	chr19	694835	147	INTRON	INTRON	KDM4B	ENSG00000127663.15	ENST00000159111.9:ENST00000611640.4:ENST00000381759.8:ENST00000536461.5:ENST00000592175.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	65	2	1.56918	3.3397550000000003	5.11033	0.0481076	0.00991388	0.171525	0.0838372
chr15	59675721	59675821	6194651	0	-	0.35	(0.32,0.35]	chr15	590213	26	INTRON	INTRON	BNIP2	ENSG00000140299.13	ENST00000267859.8:ENST00000607373.6:ENST00000612191.4:ENST00000439052.5:ENST00000415213.7:ENST00000448414.5:ENST00000464390.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	33	2	2.30673	3.33971	4.37269	0.0584434	0.0154102	0.167723	0.108569
chr2	65420179	65420279	1144073	0	-	0.34	(0.32,0.35]	chr2	122242	426	INTRON	INTRON	SPRED2	ENSG00000198369.10	ENST00000356388.9:ENST00000440972.1	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	2.30673	3.33971	4.37269	0.0584434	0.0154102	0.167723	0.108569
chr2	235547233	235547333	1041869	0	+	0.34	(0.32,0.35]	chr2	111222	223	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1:ENST00000402604.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	33	2	2.30673	3.33971	4.37269	0.0584434	0.0154102	0.167723	0.108569
chr3	39068270	39068370	1401307	0	+	0.33	(0.32,0.35]	chr3	147055	1	SS3_PROX	SS3_PROX:INTRON	WDR48	ENSG00000114742.14	ENST00000423296.6:ENST00000302313.10:ENST00000413099.6:ENST00000433841.6:ENST00000420940.6:ENST00000441361.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	33	2	2.30673	3.33971	4.37269	0.0584434	0.0154102	0.167723	0.108569
chr4	77813675	77813775	2166979	0	-	0.34	(0.32,0.35]	chr4	213719	369	INTRON	INTRON	CNOT6L	ENSG00000138767.14	ENST00000504123.7:ENST00000649644.1:ENST00000515506.6:ENST00000512485.6:ENST00000504804.7:ENST00000506166.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	41	2	2.13945	3.339665	4.53988	0.0254517	0.0202178	0.133676	0.109913
chr12	130875325	130875418	5247127	0	+	0.526882	(0.515,0.57]	chr12	498946	2	SS3_PROX	SS3_PROX:INTRON	RAN	ENSG00000132341.12	ENST00000448750.7:ENST00000536606.5:ENST00000543796.6:ENST00000541630.5:ENST00000392369.6:ENST00000477395.5:ENST00000535090.5:ENST00000541679.7:ENST00000392367.4:ENST00000464211.6:ENST00000539498.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	131	2	2.35487	3.33952	4.32417	4.60561e-4	7.95528e-6	0.0198034	0.0020223
chr1	21782247	21782323	396862	0	-	0.381579	(0.378,0.408]	chr1	47349	4	INTRON	INTRON	USP48	ENSG00000090686.16	ENST00000400301.5:ENST00000308271.14:ENST00000529637.5:ENST00000421625.6:ENST00000532737.1:ENST00000489108.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	104	2	3.16993	3.3395	3.50907	0.00127828	7.75659e-5	0.0326395	0.00735438
chr11	64201584	64201682	4802201	0	+	0.438776	(0.408,0.44]	chr11	445296	9	INTRON	INTRON	STIP1	ENSG00000168439.17	ENST00000358794.9:ENST00000305218.9:ENST00000536973.5:ENST00000538945.5:ENST00000540887.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	37	2	2.07919	3.3394899999999996	4.59979	0.0291499	0.0109537	0.14147	0.0873034
chr14	90795212	90795312	5951534	0	-	0.42	(0.408,0.44]	chr14	565050	85	INTRON	INTRON	TTC7B	ENSG00000165914.15	ENST00000328459.11:ENST00000553948.1	protein_coding	protein_coding	protein_coding	protein_coding	2	37	2	2.07919	3.3394899999999996	4.59979	0.0291499	0.0109537	0.14147	0.0873034
chr18	12714647	12714746	6876026	0	+	0.484848	(0.476,0.515]	chr18	681236	15	INTRON	INTRON	PSMG2	ENSG00000128789.21	ENST00000585331.6:ENST00000586445.5:ENST00000590217.5:ENST00000586587.1:ENST00000317615.11	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	37	2	2.06491	3.3394649999999997	4.61402	0.0304733	0.00947755	0.143385	0.0817766
chr3	37106023	37106119	1655917	0	-	0.479167	(0.476,0.515]	chr3	169946	1	INTRON	INTRON	LRRFIP2	ENSG00000093167.18	ENST00000336686.9:ENST00000354379.8:ENST00000421276.6:ENST00000396428.6:ENST00000440230.5:ENST00000416425.5:ENST00000481682.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	37	2	2.06491	3.3394649999999997	4.61402	0.0304733	0.00947755	0.143385	0.0817766
chr4	150608026	150608126	2267651	0	-	0.5	(0.476,0.515]	chr4	220713	85	INTRON	INTRON	LRBA	ENSG00000198589.14	ENST00000357115.9:ENST00000651943.2:ENST00000510413.5:ENST00000509835.5:ENST00000651695.1:ENST00000651035.1:ENST00000507224.5:ENST00000513021.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	37	2	2.06491	3.3394649999999997	4.61402	0.0304733	0.00947755	0.143385	0.0817766
chr4	80068835	80068935	2170512	0	-	0.3	(0.28,0.32]	chr4	213931	125	INTRON	INTRON	ANTXR2	ENSG00000163297.18	ENST00000403729.7:ENST00000449651.5:ENST00000679571.1:ENST00000681710.1:ENST00000680913.1:ENST00000681115.1:ENST00000404191.5:ENST00000346652.10:ENST00000307333.7:ENST00000514959.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	52	2	1.81152	3.339415	4.86731	0.034446	0.0116253	0.147767	0.0889104
chr5	112982050	112982145	2453432	0	+	0.473684	(0.44,0.476]	chr5	235068	5	INTRON	INTRON	DCP2	ENSG00000172795.17	ENST00000515408.5:ENST00000513585.6:ENST00000502635.2:ENST00000510046.1:ENST00000389063.3:ENST00000674880.1:ENST00000504961.1:ENST00000512751.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	82	2	2.848	3.33935	3.8307	0.00215274	1.81621e-4	0.0417866	0.0117212
chr6	27852630	27852729	2839164	0	+	0.333333	(0.32,0.35]	chr6	266461	6	UTR3	UTR3:EXON_MRNA	H2BC15	ENSG00000233822.6	ENST00000606613.1	protein_coding	protein_coding	protein_coding	protein_coding	4	56	2	1.54741	3.3393200000000003	5.13123	0.0473733	0.00394704	0.169265	0.0548259
chrX	154798150	154798250	7915538	0	-	0.35	(0.32,0.35]	chrX	806172	55	INTRON	INTRON	MPP1	ENSG00000130830.15	ENST00000369534.8:ENST00000413259.7:ENST00000439370.5:ENST00000393531.5:ENST00000453245.5:ENST00000494170.1:ENST00000462825.5:ENST00000393529.5:ENST00000475943.5:ENST00000428488.1:ENST00000417435.5:ENST00000369531.1:ENST00000471821.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	56	2	1.54741	3.3393200000000003	5.13123	0.0473733	0.00394704	0.169265	0.0548259
chr1	219912798	219912896	637900	0	-	0.418367	(0.408,0.44]	chr1	75124	25	UTR3	UTR3:EXON_MRNA:INTRON	SLC30A10	ENSG00000196660.12	ENST00000484239.5:ENST00000696608.1:ENST00000366926.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	82	2	3.19065	3.33929	3.48793	0.00130904	3.2984e-4	0.0331539	0.0161352
chr19	9424223	9424322	7132450	0	-	0.323232	(0.32,0.35]	chr19	718745	36	INTRON	INTRON	ZNF266	ENSG00000174652.20	ENST00000592904.7:ENST00000588221.5:ENST00000588933.5:ENST00000590306.5:ENST00000651268.1:ENST00000592292.5	protein_coding	protein_coding	protein_coding	protein_coding	2	71	2	3.3273	3.33923	3.35116	0.00283808	0.00218894	0.0473151	0.0435144
chr20	47356020	47356106	7349512	0	-	0.55814	(0.515,0.57]	chr20	749371	1	SS5_PROX	SS5_PROX:INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000458360.6:ENST00000262975.8:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000435836.5	protein_coding	protein_coding	protein_coding	protein_coding	3	43	2	1.75372	3.339225	4.92473	0.0386904	0.00108255	0.14279	0.0300133
chr6	15280742	15280842	2823293	0	+	0.47	(0.44,0.476]	chr6	265190	314	INTRON	INTRON	JARID2	ENSG00000008083.14	ENST00000341776.7:ENST00000397311.4	protein_coding	protein_coding	protein_coding	protein_coding	2	61	2	3.26669	3.339225	3.41176	0.00305435	0.00130987	0.0493883	0.0333932
chr7	158896585	158896684	3456537	0	+	0.474747	(0.44,0.476]	chr7	323179	49	INTRON	INTRON	DYNC2I1	ENSG00000126870.16	ENST00000407559.8:ENST00000444851.5:ENST00000467220.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	61	2	3.26669	3.339225	3.41176	0.00305435	0.00130987	0.0493883	0.0333932
chr1	212308493	212308593	308307	0	+	0.49	(0.476,0.515]	chr1	35566	12	INTRON	INTRON	PPP2R5A	ENSG00000066027.12	ENST00000261461.7:ENST00000537030.3:ENST00000498129.6:ENST00000479259.1:ENST00000498123.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	37	2	1.8388	3.33921	4.83962	0.0564473	0.00480934	0.184423	0.0602209
chr11	120465462	120465562	4877527	0	+	0.51	(0.476,0.515]	chr11	455934	1	SS5_PROX	SS5_PROX:INTRON	ARHGEF12	ENSG00000196914.9	ENST00000397843.7:ENST00000356641.7:ENST00000532993.5:ENST00000529970.5:ENST00000530747.5:ENST00000531616.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	37	2	1.8388	3.33921	4.83962	0.0564473	0.00480934	0.184423	0.0602209
chr17	5296729	5296829	6550792	0	+	0.48	(0.476,0.515]	chr17	635879	123	INTRON	INTRON	RABEP1	ENSG00000029725.17	ENST00000575991.1:ENST00000537505.6:ENST00000575475.2:ENST00000341923.10	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	37	2	1.8388	3.33921	4.83962	0.0564473	0.00480934	0.184423	0.0602209
chr17	59044989	59045089	6801295	0	-	0.5	(0.476,0.515]	chr17	671719	27	INTRON	INTRON	TRIM37	ENSG00000108395.14	ENST00000393066.7:ENST00000577554.5:ENST00000262294.12:ENST00000393065.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	37	2	1.8388	3.33921	4.83962	0.0564473	0.00480934	0.184423	0.0602209
chr14	21229022	21229122	5834753	0	-	0.43	(0.408,0.44]	chr14	554424	156	INTRON	INTRON	HNRNPC	ENSG00000092199.19	ENST00000336053.10:ENST00000553300.6:ENST00000554969.5:ENST00000556142.5:ENST00000554455.5:ENST00000430246.6:ENST00000553753.5:ENST00000555309.5:ENST00000555914.5:ENST00000557442.5:ENST00000556628.5:ENST00000556513.5:ENST00000555883.5:ENST00000557201.5:ENST00000556897.5:ENST00000420743.6:ENST00000557157.5:ENST00000554539.5:ENST00000554383.5:ENST00000554417.1:ENST00000555215.5:ENST00000555137.5:ENST00000554891.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	82	2	2.9826	3.33916	3.69572	9.23082e-4	5.37849e-4	0.0278392	0.0214775
chr7	158823246	158823346	3689751	0	-	0.35	(0.32,0.35]	chr7	342421	238	INTRON	INTRON	ESYT2	ENSG00000117868.18	ENST00000251527.10:ENST00000275418.13:ENST00000652148.1:ENST00000483958.5:ENST00000497111.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	43	2	2.4053	3.33915	4.273	0.0368357	0.0108284	0.138959	0.0920575
chr13	95144495	95144595	5638285	0	-	0.38	(0.378,0.408]	chr13	537056	281	INTRON	INTRON	ABCC4	ENSG00000125257.16	ENST00000645237.2:ENST00000643051.1:ENST00000643842.1:ENST00000646439.1:ENST00000644880.1:ENST00000643816.1:ENST00000536256.3:ENST00000643556.1:ENST00000629385.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	47	2	2.09402	3.3391450000000003	4.58427	0.0128325	0.0126438	0.0982897	0.0926667
chr4	39729233	39729333	1953303	0	+	0.47	(0.44,0.476]	chr4	195630	305	INTRON	INTRON	UBE2K	ENSG00000078140.14	ENST00000510934.5:ENST00000261427.10:ENST00000438068.6:ENST00000513231.5:ENST00000503368.5:ENST00000445950.2:ENST00000510719.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	109	2	3.19785	3.3391450000000003	3.48044	4.51048e-4	6.78832e-5	0.0196417	0.00682671
chr13	79406062	79406158	5626408	0	-	0.5625	(0.515,0.57]	chr13	536671	4	UTR5	UTR5:EXON_MRNA	RBM26	ENSG00000139746.16	ENST00000438737.3:ENST00000438724.5:ENST00000622611.4:ENST00000472143.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	53	2	3.1473	3.3390750000000002	3.53085	0.00397184	6.59951e-4	0.0549214	0.0232396
chr3	60176933	60177033	1711383	0	-	0.39	(0.378,0.408]	chr3	176138	962	INTRON	INTRON	FHIT	ENSG00000189283.10	ENST00000492590.6:ENST00000476844.5:ENST00000468189.5:ENST00000488467.5	protein_coding	protein_coding	protein_coding	protein_coding	2	41	2	1.76032	3.3390400000000002	4.91776	0.0721577	0.00196368	0.187433	0.0411469
chr7	152379461	152379561	3680728	0	-	0.49	(0.476,0.515]	chr7	341660	204	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000682301.1:ENST00000452749.2:ENST00000680867.1:ENST00000683800.1:ENST00000684278.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	165	2	2.86666	3.3389699999999998	3.81128	6.24866e-5	1.64105e-5	0.00657765	0.00324999
chr19	5968798	5968897	7125516	0	-	0.525253	(0.515,0.57]	chr19	717384	25	INTRON	INTRON	RANBP3	ENSG00000031823.14	ENST00000340578.10:ENST00000439268.6:ENST00000592771.5:ENST00000591092.5:ENST00000034275.12:ENST00000587479.2:ENST00000592621.5:ENST00000590623.5:ENST00000591736.5:ENST00000590953.5:ENST00000588879.5:ENST00000587159.5:ENST00000586117.5:ENST00000589353.5:ENST00000587463.5:ENST00000588010.5:ENST00000591124.5:ENST00000585339.5:ENST00000592133.5:ENST00000591881.5:ENST00000589886.5:ENST00000587263.5:ENST00000587956.5:ENST00000591333.5:ENST00000592266.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	53	2	3.30665	3.3389499999999996	3.37125	0.00213226	0.00136343	0.041756	0.0339121
chr11	75405448	75405545	4831890	0	+	0.329897	(0.32,0.35]	chr11	450864	7	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	RPS3	ENSG00000149273.15	ENST00000531188.6:ENST00000528439.5:ENST00000530721.5:ENST00000422465.6:ENST00000532872.5:ENST00000278572.10:ENST00000527446.5:ENST00000534440.5:ENST00000526248.5:ENST00000525690.1:ENST00000525933.1:ENST00000530170.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	96	2	2.82385	3.338945	3.85404	0.00217392	3.75908e-4	0.043502	0.0179813
chr5	139318121	139318221	2499636	0	+	0.53	(0.515,0.57]	chr5	238944	4	SS5_PROX	SS5_PROX:INTRON	MATR3	ENSG00000280987.4:ENSG00000015479.20	ENST00000509990.5:ENST00000361059.7:ENST00000394800.6:ENST00000502929.5:ENST00000504203.5:ENST00000512876.5:ENST00000504311.5:ENST00000502499.5:ENST00000510056.5:ENST00000511249.5:ENST00000394805.8:ENST00000509918.5:ENST00000503811.5:ENST00000511978.5:ENST00000618441.5:ENST00000504643.5:ENST00000515833.2:ENST00000505625.5:ENST00000502422.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	9	173	2	3.03832	3.338945	3.63957	2.92494e-5	3.42968e-6	0.00449807	0.00120545
chr17	2671856	2671955	6548236	0	+	0.454545	(0.44,0.476]	chr17	635277	4	INTRON	INTRON	PAFAH1B1	ENSG00000007168.14	ENST00000397195.10:ENST00000675621.1:ENST00000676353.1:ENST00000674717.1:ENST00000675202.1:ENST00000675764.1:ENST00000674608.1:ENST00000676077.1:ENST00000676098.1:ENST00000572915.6:ENST00000675331.1:ENST00000676188.1:ENST00000574816.5:ENST00000675390.1:ENST00000397193.7:ENST00000574468.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	40	2	2.54944	3.338935	4.12843	0.0337192	0.00591346	0.134145	0.0694038
chr1	65283395	65283495	135827	0	+	0.41	(0.408,0.44]	chr1	15346	181	INTRON	INTRON	DNAJC6	ENSG00000116675.16	ENST00000463018.5:ENST00000494710.6:ENST00000263441.11:ENST00000395325.7:ENST00000483402.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	152	2	2.86692	3.3389249999999997	3.81093	2.28235e-4	9.03544e-6	0.0138641	0.00216015
chr7	107561905	107562005	3613012	0	-	0.52	(0.515,0.57]	chr7	336728	34	INTRON	INTRON	COG5	ENSG00000164597.15	ENST00000297135.9:ENST00000347053.8:ENST00000393603.7:ENST00000605888.1	protein_coding	protein_coding	protein_coding	protein_coding	4	86	2	2.79153	3.338845	3.88616	6.28135e-4	1.07993e-4	0.023031	0.00878438
chr15	42500526	42500625	6009649	0	+	0.494949	(0.476,0.515]	chr15	572143	42	INTRON	INTRON	SNAP23	ENSG00000092531.10	ENST00000568745.5:ENST00000561526.5:ENST00000568227.5:ENST00000568451.5:ENST00000563765.5:ENST00000349777.5:ENST00000249647.8:ENST00000564153.5:ENST00000566141.5:ENST00000567094.5:ENST00000566327.5:ENST00000568331.5:ENST00000563451.1:ENST00000626061.2:ENST00000627440.2:ENST00000566035.5:ENST00000568859.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	39	2	2.43242	3.3387149999999997	4.24501	0.0247713	0.0091895	0.12011	0.0855292
chr1	19132746	19132845	385977	0	-	0.292929	(0.28,0.32]	chr1	45834	33	INTRON	INTRON	UBR4	ENSG00000127481.15	ENST00000375254.8:ENST00000425413.5:ENST00000417040.1	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	2.53522	3.33868	4.14214	0.0579756	0.0310424	0.167723	0.143457
chr10	119035149	119035248	4704439	0	-	0.282828	(0.28,0.32]	chr10	433904	16	UTR3	UTR3:EXON_MRNA	EIF3A	ENSG00000107581.13	ENST00000369144.8	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	2.53522	3.33868	4.14214	0.0579756	0.0310424	0.167723	0.143457
chr12	116272165	116272264	5425496	0	-	0.30303	(0.28,0.32]	chr12	518291	341	INTRON	INTRON	MED13L	ENSG00000123066.9	ENST00000281928.9:ENST00000650226.1:ENST00000548743.2:ENST00000551197.2:ENST00000650375.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	32	2	2.53522	3.33868	4.14214	0.0579756	0.0310424	0.167723	0.143457
chr2	113479729	113479829	853901	0	+	0.3	(0.28,0.32]	chr2	95830	83	INTRON	INTRON	CBWD2	ENSG00000136682.16	ENST00000259199.9:ENST00000416503.6:ENST00000358604.7:ENST00000456188.5:ENST00000479583.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	32	2	2.53522	3.33868	4.14214	0.0579756	0.0310424	0.167723	0.143457
chr3	47667967	47668067	1683912	0	-	0.32	(0.28,0.32]	chr3	172008	50	INTRON	INTRON	SMARCC1	ENSG00000173473.11	ENST00000254480.10:ENST00000425518.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	32	2	2.53522	3.33868	4.14214	0.0579756	0.0310424	0.167723	0.143457
chr4	26425937	26426036	1937749	0	+	0.313131	(0.28,0.32]	chr4	194455	8	INTRON	INTRON	RBPJ	ENSG00000168214.22	ENST00000681799.1:ENST00000681403.1:ENST00000342295.6:ENST00000512671.6:ENST00000345843.8:ENST00000361572.10:ENST00000514380.5:ENST00000348160.9:ENST00000681506.1:ENST00000509158.6:ENST00000691085.1:ENST00000692303.1:ENST00000681856.1:ENST00000681025.1:ENST00000681679.1:ENST00000680210.1:ENST00000355476.8:ENST00000680140.1:ENST00000680511.1:ENST00000510778.7:ENST00000679698.1:ENST00000679469.1:ENST00000681484.1:ENST00000505958.6:ENST00000507561.5:ENST00000689192.1:ENST00000680928.1:ENST00000681260.1:ENST00000681093.1:ENST00000504423.2:ENST00000342320.8:ENST00000504907.5:ENST00000681264.1:ENST00000680204.1:ENST00000515023.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	32	2	2.53522	3.33868	4.14214	0.0579756	0.0310424	0.167723	0.143457
chr4	79976225	79976325	2169568	0	-	0.32	(0.28,0.32]	chr4	213849	113	INTRON	INTRON	ANTXR2	ENSG00000163297.18	ENST00000403729.7:ENST00000449651.5:ENST00000679571.1:ENST00000681710.1:ENST00000680913.1:ENST00000681115.1:ENST00000404191.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	32	2	2.53522	3.33868	4.14214	0.0579756	0.0310424	0.167723	0.143457
chr7	64828740	64828840	3320693	0	+	0.31	(0.28,0.32]	chr7	308722	127	INTRON	INTRON	ZNF138	ENSG00000197008.10	ENST00000359735.7:ENST00000440155.6:ENST00000494380.5:ENST00000307355.12:ENST00000437743.1:ENST00000440598.2:ENST00000430838.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	32	2	2.53522	3.33868	4.14214	0.0579756	0.0310424	0.167723	0.143457
chr7	74705518	74705618	3335733	0	+	0.31	(0.28,0.32]	chr7	310378	3	SS5_PROX	SS5_PROX:INTRON	GTF2I	ENSG00000263001.8	ENST00000650807.1:ENST00000690345.1:ENST00000573035.6:ENST00000614986.4:ENST00000620879.4:ENST00000621734.4:ENST00000443166.5:ENST00000490431.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	32	2	2.53522	3.33868	4.14214	0.0579756	0.0310424	0.167723	0.143457
chr9	91323719	91323819	4280840	0	-	0.29	(0.28,0.32]	chr9	393797	253	INTRON	INTRON	AUH	ENSG00000148090.12	ENST00000303617.5:ENST00000375731.9:ENST00000478465.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	32	2	2.53522	3.33868	4.14214	0.0579756	0.0310424	0.167723	0.143457
chr15	49124401	49124499	6167494	0	-	0.27551	[0,0.28]	chr15	587832	18	UTR3	UTR3:EXON_MRNA:INTRON	COPS2	ENSG00000166200.15	ENST00000560240.5:ENST00000388901.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	39	2	2.38757	3.33836	4.28915	0.0552962	0.0319595	0.165463	0.14477
chr10	31903578	31903678	4590068	0	-	0.38	(0.378,0.408]	chr10	423163	416	INTRON	INTRON	ARHGAP12	ENSG00000165322.18	ENST00000344936.7:ENST00000375245.8:ENST00000396144.8:ENST00000375250.9:ENST00000311380.8	protein_coding	protein_coding	protein_coding	protein_coding	2	38	2	2.17608	3.33832	4.50056	0.0218783	0.015974	0.123836	0.101453
chr12	123581372	123581472	5445489	0	-	0.4	(0.378,0.408]	chr12	521145	56	EXON_LNCRNA	EXON_LNCRNA	TMED2-DT	ENSG00000247373.3	ENST00000498967.3	lncRNA	lncRNA	lncRNA	lncRNA	2	38	2	2.17608	3.33832	4.50056	0.0218783	0.015974	0.123836	0.101453
chr5	119072255	119072354	2459773	0	+	0.393939	(0.378,0.408]	chr5	235574	2	INTRON	INTRON	DMXL1	ENSG00000172869.15	ENST00000509902.5:ENST00000539542.6:ENST00000503802.5:ENST00000311085.8:ENST00000510924.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	38	2	2.17608	3.33832	4.50056	0.0218783	0.015974	0.123836	0.101453
chr6	2774712	2774811	2787591	0	+	0.40404	(0.378,0.408]	chr6	263170	40	INTRON	INTRON	WRNIP1	ENSG00000124535.16	ENST00000380773.9:ENST00000380771.8:ENST00000618555.4:ENST00000380769.8:ENST00000380764.1	protein_coding	protein_coding	protein_coding	protein_coding	2	38	2	2.17608	3.33832	4.50056	0.0218783	0.015974	0.123836	0.101453
chr6	133966960	133967060	2961894	0	+	0.39	(0.378,0.408]	chr6	278509	132	INTRON	INTRON	TBPL1	ENSG00000028839.10	ENST00000613034.4:ENST00000416965.5:ENST00000457715.1:ENST00000367871.5:ENST00000237264.9:ENST00000367869.1	protein_coding	protein_coding	protein_coding	protein_coding	2	38	2	2.17608	3.33832	4.50056	0.0218783	0.015974	0.123836	0.101453
chr9	97515264	97515364	4171724	0	+	0.4	(0.378,0.408]	chr9	380069	131	INTRON	INTRON	TMOD1	ENSG00000136842.14	ENST00000395211.6:ENST00000259365.9	protein_coding	protein_coding	protein_coding	protein_coding	2	38	2	2.17608	3.33832	4.50056	0.0218783	0.015974	0.123836	0.101453
chr19	34378181	34378281	7052619	0	+	0.52	(0.515,0.57]	chr19	703383	3	SS5_PROX	SS5_PROX:INTRON	GPI	ENSG00000105220.17	ENST00000415930.8:ENST00000588991.7:ENST00000356487.11:ENST00000589399.6:ENST00000647446.1:ENST00000586425.2:ENST00000643067.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	71	2	3.27241	3.338145	3.40388	0.00142538	1.80226e-4	0.0340865	0.0116696
chr21	5123866	5123963	7424444	0	-	0.57732000000000006	(0.57,1]	chr21	757271	13	INTRON	INTRON	ENSG00000280071	ENSG00000280071.4	ENST00000624810.3:ENST00000625036.3:ENST00000620528.5:ENST00000620015.4:ENST00000624120.3:ENST00000624648.3:ENST00000624748.2:ENST00000623810.2:ENST00000624714.3:ENST00000623390.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	26	2	2.50742	3.338115	4.16881	0.00631173	0.00574776	0.0687526	0.0681402
chr1	50606048	50606147	448705	0	-	0.323232	(0.32,0.35]	chr1	54219	95	INTRON	INTRON	FAF1	ENSG00000185104.21	ENST00000396153.7:ENST00000494400.5:ENST00000472808.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	30	2	2.40308	3.33804	4.273	0.0417732	0.0368357	0.161736	0.138959
chr11	74886473	74886572	4988575	0	-	0.343434	(0.32,0.35]	chr11	471326	225	INTRON	INTRON	XRRA1	ENSG00000166435.16	ENST00000530562.5:ENST00000340360.10:ENST00000321448.12:ENST00000684022.1:ENST00000531849.5:ENST00000527087.5:ENST00000531449.5:ENST00000529926.1:ENST00000528819.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	30	2	2.40308	3.33804	4.273	0.0417732	0.0368357	0.161736	0.138959
chr15	68100779	68100879	6056421	0	+	0.34	(0.32,0.35]	chr15	576567	125	INTRON	INTRON	PIAS1	ENSG00000033800.14	ENST00000564915.5:ENST00000249636.11:ENST00000562190.1:ENST00000545237.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	30	2	2.40308	3.33804	4.273	0.0417732	0.0368357	0.161736	0.138959
chr17	82760884	82760982	6694285	0	+	0.336735	(0.32,0.35]	chr17	654822	9	INTRON	INTRON	TBCD	ENSG00000141556.22	ENST00000682479.1:ENST00000682722.1:ENST00000684464.1:ENST00000684544.1:ENST00000681983.1:ENST00000684361.1:ENST00000683184.1:ENST00000683282.1:ENST00000684408.1:ENST00000355528.9:ENST00000683444.1:ENST00000684776.1:ENST00000683041.1:ENST00000684760.1:ENST00000684349.1:ENST00000682213.1:ENST00000683009.1:ENST00000682921.1:ENST00000682107.1:ENST00000539345.6:ENST00000684000.1:ENST00000684188.1:ENST00000684429.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	30	2	2.40308	3.33804	4.273	0.0417732	0.0368357	0.161736	0.138959
chr19	52562620	52562718	7095615	0	+	0.336735	(0.32,0.35]	chr19	711375	32	INTRON	INTRON	ZNF808:ZNF701	ENSG00000198482.14:ENSG00000167562.14	ENST00000487863.5:ENST00000478039.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	1	30	2	2.40308	3.33804	4.273	0.0417732	0.0368357	0.161736	0.138959
chr20	34901618	34901718	7261236	0	+	0.33	(0.32,0.35]	chr20	737651	76	INTRON	INTRON	ACSS2	ENSG00000131069.20	ENST00000481971.5:ENST00000488172.5:ENST00000497927.5:ENST00000481284.5:ENST00000475459.6:ENST00000484354.1:ENST00000480274.1:ENST00000477932.5:ENST00000473172.5:ENST00000493805.6:ENST00000480978.5:ENST00000360596.7:ENST00000467019.5:ENST00000253382.5:ENST00000476922.5:ENST00000464399.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	30	2	2.40308	3.33804	4.273	0.0417732	0.0368357	0.161736	0.138959
chr6	37898174	37898274	2857817	0	+	0.34	(0.32,0.35]	chr6	270225	778	INTRON	INTRON	ZFAND3	ENSG00000156639.12	ENST00000287218.9:ENST00000373391.6:ENST00000474522.5	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	2.40308	3.33804	4.273	0.0417732	0.0368357	0.161736	0.138959
chr6	107421002	107421102	3181528	0	-	0.34	(0.32,0.35]	chr6	296346	863	INTRON	INTRON	PDSS2	ENSG00000164494.12	ENST00000369037.9:ENST00000369031.4	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	2.40308	3.33804	4.273	0.0417732	0.0368357	0.161736	0.138959
chr7	1043207	1043307	3460890	0	-	0.33	(0.32,0.35]	chr7	323579	150	INTRON	INTRON	C7orf50	ENSG00000146540.15	ENST00000357429.10:ENST00000397100.6:ENST00000397098.8:ENST00000488073.1:ENST00000444428.5:ENST00000491163.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	30	2	2.40308	3.33804	4.273	0.0417732	0.0368357	0.161736	0.138959
chr1	174407325	174407425	259603	0	+	0.38	(0.378,0.408]	chr1	30818	128	INTRON	INTRON	RABGAP1L	ENSG00000152061.24	ENST00000357444.10:ENST00000251507.8:ENST00000681986.1:ENST00000367690.5:ENST00000526253.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	31	2	2.46373	3.337995	4.21226	0.0382831	0.0177403	0.141795	0.11319
chr3	196235937	196236036	1897780	0	-	0.393939	(0.378,0.408]	chr3	190004	17	UTR3	UTR3:EXON_MRNA:INTRON	PCYT1A	ENSG00000161217.12	ENST00000441879.5:ENST00000419333.5:ENST00000431016.6:ENST00000292823.6	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	2.46373	3.337995	4.21226	0.0382831	0.0177403	0.141795	0.11319
chr19	18572411	18572509	7033217	0	+	0.571429	(0.57,1]	chr19	700925	8	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	UBA52	ENSG00000221983.8	ENST00000596304.5:ENST00000430157.6:ENST00000596273.5:ENST00000442744.7:ENST00000598814.1:ENST00000595683.5:ENST00000599256.5:ENST00000595158.5:ENST00000598780.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	40	2	2.00153	3.33798	4.67443	0.00529543	8.07515e-4	0.063668	0.0258804
chr2	26788275	26788374	715770	0	+	0.333333	(0.32,0.35]	chr2	82664	16	INTRON	INTRON	CENPA	ENSG00000115163.15	ENST00000475662.5:ENST00000472719.5:ENST00000335756.9:ENST00000233505.12:ENST00000419525.5:ENST00000460030.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	35	2	2.6321	3.3378699999999997	4.04364	0.034181	0.0268	0.146815	0.123349
chr17	782792	782887	6545375	0	+	0.410526	(0.408,0.44]	chr17	634759	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MRM3	ENSG00000171861.11	ENST00000304478.9:ENST00000574916.1:ENST00000574509.1:ENST00000571157.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	33	2	2.84077	3.3378550000000002	3.83494	0.0411442	0.0132196	0.161534	0.0940535
chr22	23216238	23216338	7483564	0	+	0.43	(0.408,0.44]	chr22	763541	165	INTRON	INTRON	BCR	ENSG00000186716.21	ENST00000479188.5:ENST00000359540.7:ENST00000305877.13:ENST00000463770.5:ENST00000487679.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	33	2	2.84077	3.3378550000000002	3.83494	0.0411442	0.0132196	0.161534	0.0940535
chr10	103402418	103402517	4516262	0	+	0.343434	(0.32,0.35]	chr10	416365	15	INTRON	INTRON	PDCD11	ENSG00000148843.15	ENST00000369797.8:ENST00000649849.1:ENST00000493610.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	30	2	2.21917	3.33773	4.45629	0.0641245	0.0246089	0.199279	0.12011
chr14	96529888	96529986	5810449	0	+	0.346939	(0.32,0.35]	chr14	550908	15	INTRON	INTRON	PAPOLA	ENSG00000090060.19	ENST00000618976.2:ENST00000216277.13:ENST00000553357.5:ENST00000553689.5:ENST00000557320.5:ENST00000554130.5:ENST00000557471.5:ENST00000392990.6:ENST00000555626.5:ENST00000557406.5:ENST00000555224.1:ENST00000555912.1:ENST00000553461.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	30	2	2.21917	3.33773	4.45629	0.0641245	0.0246089	0.199279	0.12011
chr2	87599468	87599568	827376	0	+	0.34	(0.32,0.35]	chr2	92475	91	INTRON	INTRON	CYTOR:ENSG00000284879	ENSG00000222041.12:ENSG00000284879.1	ENST00000642796.1:ENST00000644478.1:ENST00000409139.6:ENST00000644125.1:ENST00000643743.1:ENST00000643276.1:ENST00000409898.2:ENST00000644976.1:ENST00000643070.1:ENST00000646855.1:ENST00000646636.1:ENST00000642872.1	lncRNA	lncRNA	lncRNA	lncRNA	1	30	2	2.21917	3.33773	4.45629	0.0641245	0.0246089	0.199279	0.12011
chr2	127333682	127333782	1223265	0	-	0.35	(0.32,0.35]	chr2	130261	28	INTRON	INTRON	MAP3K2	ENSG00000169967.17	ENST00000682094.1:ENST00000409947.5:ENST00000344908.9	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	2.21917	3.33773	4.45629	0.0641245	0.0246089	0.199279	0.12011
chr2	189461983	189462083	952834	0	+	0.34	(0.32,0.35]	chr2	103670	1	SS3_PROX	SS3_PROX:INTRON	WDR75	ENSG00000115368.10	ENST00000436347.5:ENST00000314761.9:ENST00000427960.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	30	2	2.21917	3.33773	4.45629	0.0641245	0.0246089	0.199279	0.12011
chr3	28282626	28282726	1390958	0	+	0.33	(0.32,0.35]	chr3	145643	189	INTRON	INTRON	CMC1	ENSG00000187118.14	ENST00000477739.1:ENST00000423894.5:ENST00000466830.6:ENST00000334841.10:ENST00000418849.2:ENST00000396610.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	30	2	2.21917	3.33773	4.45629	0.0641245	0.0246089	0.199279	0.12011
chr7	67051261	67051360	3327190	0	+	0.323232	(0.32,0.35]	chr7	309429	8	INTRON	INTRON	TYW1	ENSG00000198874.14	ENST00000359626.10:ENST00000361660.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	30	2	2.21917	3.33773	4.45629	0.0641245	0.0246089	0.199279	0.12011
chr7	105079063	105079163	3375290	0	+	0.34	(0.32,0.35]	chr7	315940	1	SS5_PROX	SS5_PROX:INTRON	KMT2E	ENSG00000005483.22	ENST00000257745.9:ENST00000334884.9:ENST00000311117.8:ENST00000478990.5:ENST00000476671.5:ENST00000667857.1:ENST00000482560.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	30	2	2.21917	3.33773	4.45629	0.0641245	0.0246089	0.199279	0.12011
chr9	33930488	33930586	4244634	0	-	0.346939	(0.32,0.35]	chr9	390367	15	INTRON	INTRON	UBAP2	ENSG00000137073.24	ENST00000379238.7:ENST00000683659.1:ENST00000682239.1:ENST00000683140.1:ENST00000682209.1:ENST00000681980.1:ENST00000360802.6:ENST00000683252.1:ENST00000684158.1:ENST00000682949.1:ENST00000682914.1:ENST00000683717.1:ENST00000379239.9:ENST00000683084.1:ENST00000684754.1:ENST00000629575.2:ENST00000474372.1:ENST00000488443.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	30	2	2.21917	3.33773	4.45629	0.0641245	0.0246089	0.199279	0.12011
chr1	8702654	8702754	372632	0	-	0.29	(0.28,0.32]	chr1	43542	2	SS5_PROX	SS5_PROX:INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000656437.1:ENST00000659924.1:ENST00000480342.5:ENST00000468247.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	45	2	2.33771	3.3376799999999998	4.33765	0.039714	0.0142701	0.143072	0.103838
chr2	113917308	113917408	854519	0	+	0.32	(0.28,0.32]	chr2	95909	3	SS5_PROX	SS5_PROX:INTRON	ACTR3	ENSG00000115091.12	ENST00000443297.5:ENST00000263238.7:ENST00000415792.5:ENST00000446821.5:ENST00000535589.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	45	2	2.33771	3.3376799999999998	4.33765	0.039714	0.0142701	0.143072	0.103838
chr1	179989523	179989619	267789	0	+	0.208333	[0,0.28]	chr1	31313	19	INTRON	INTRON	CEP350	ENSG00000135837.16	ENST00000491495.2:ENST00000367607.8:ENST00000357434.2	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	2.29142	3.337645	4.38387	0.0592143	0.0501911	0.189982	0.156383
chr11	68477695	68477795	4817502	0	+	0.23	[0,0.28]	chr11	448907	165	INTRON	INTRON	PPP6R3	ENSG00000110075.15	ENST00000530427.5:ENST00000528635.5:ENST00000529907.5:ENST00000533127.5:ENST00000534534.5:ENST00000529344.5:ENST00000524845.5:ENST00000393800.7:ENST00000265637.8:ENST00000524904.5:ENST00000393801.7:ENST00000265636.9:ENST00000529710.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	34	2	2.29142	3.337645	4.38387	0.0592143	0.0501911	0.189982	0.156383
chr11	78410052	78410152	5000310	0	-	0.28	[0,0.28]	chr11	472472	456	INTRON	INTRON	GAB2	ENSG00000033327.13	ENST00000361507.5:ENST00000526030.1:ENST00000528886.5:ENST00000530915.1:ENST00000534823.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	34	2	2.29142	3.337645	4.38387	0.0592143	0.0501911	0.189982	0.156383
chr19	20657358	20657458	7158103	0	-	0.23	[0,0.28]	chr19	723638	106	INTRON	INTRON	ZNF626	ENSG00000188171.17	ENST00000601440.6:ENST00000595405.1:ENST00000291750.6	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	2.29142	3.337645	4.38387	0.0592143	0.0501911	0.189982	0.156383
chr2	32195455	32195552	730084	0	+	0.226804	[0,0.28]	chr2	84197	11	INTRON	INTRON	SLC30A6	ENSG00000152683.14	ENST00000357055.7:ENST00000435660.5:ENST00000282587.9:ENST00000449777.5:ENST00000454324.5:ENST00000379343.6:ENST00000440718.5:ENST00000406369.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	34	2	2.29142	3.337645	4.38387	0.0592143	0.0501911	0.189982	0.156383
chr5	105391260	105391360	2696339	0	-	0.28	[0,0.28]	chr5	254248	1450	INTRON	INTRON	ENSG00000251574	ENSG00000251574.8	ENST00000503650.1	lncRNA	lncRNA	lncRNA	lncRNA	1	34	2	2.29142	3.337645	4.38387	0.0592143	0.0501911	0.189982	0.156383
chr5	154776877	154776977	2527213	0	+	0.26	[0,0.28]	chr5	241610	190	INTRON	INTRON	LARP1	ENSG00000155506.19	ENST00000687700.1:ENST00000336314.9:ENST00000690816.1:ENST00000518297.6:ENST00000517616.5:ENST00000518892.1:ENST00000521577.1:ENST00000519931.5:ENST00000524248.5:ENST00000685946.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	34	2	2.29142	3.337645	4.38387	0.0592143	0.0501911	0.189982	0.156383
chr6	126022377	126022476	2956432	0	+	0.242424	[0,0.28]	chr6	278051	7	INTRON	INTRON	TRMT11	ENSG00000066651.20	ENST00000479748.5:ENST00000368332.7:ENST00000648977.1:ENST00000334379.11:ENST00000466316.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	34	2	2.29142	3.337645	4.38387	0.0592143	0.0501911	0.189982	0.156383
chr7	87842719	87842808	3566028	0	-	0.247191	[0,0.28]	chr7	332283	3	INTRON	INTRON	SLC25A40	ENSG00000075303.13	ENST00000341119.10:ENST00000446236.5:ENST00000429674.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	34	2	2.29142	3.337645	4.38387	0.0592143	0.0501911	0.189982	0.156383
chr8	90004011	90004108	3791782	0	+	0.257732	[0,0.28]	chr8	351683	21	INTRON	INTRON	DECR1	ENSG00000104325.7	ENST00000519328.5:ENST00000517314.5:ENST00000521603.5:ENST00000523447.5:ENST00000517597.5:ENST00000519410.5:ENST00000220764.7:ENST00000522161.5:ENST00000519007.5:ENST00000520859.5:ENST00000521668.1:ENST00000518725.5:ENST00000517761.5:ENST00000520227.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	34	2	2.29142	3.337645	4.38387	0.0592143	0.0501911	0.189982	0.156383
chr11	3378300	3378400	4893853	0	-	0.36	(0.35,0.378]	chr11	458715	4	SS3_PROX	SS3_PROX:INTRON	ZNF195	ENSG00000005801.18	ENST00000528796.5:ENST00000399602.9:ENST00000354599.10:ENST00000343338.11:ENST00000620374.4:ENST00000649622.1:ENST00000429541.6:ENST00000005082.13:ENST00000526601.5:ENST00000438262.6:ENST00000528410.5:ENST00000528218.5:ENST00000525313.6:ENST00000533036.5:ENST00000529678.5:ENST00000427810.6:ENST00000534569.5:ENST00000524857.5:ENST00000530643.5:ENST00000618467.4:ENST00000330692.11:ENST00000525502.5:ENST00000526501.5:ENST00000532539.1:ENST00000529085.5:ENST00000527386.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	33	2	2.60341	3.3376349999999997	4.07186	0.0279478	0.0275785	0.137011	0.123904
chr3	42916302	42916402	1407585	0	+	0.36	(0.35,0.378]	chr3	147759	70	INTRON	INTRON	KRBOX1	ENSG00000240747.8	ENST00000426937.5	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	2.60341	3.3376349999999997	4.07186	0.0279478	0.0275785	0.137011	0.123904
chrX	118607571	118607671	7709312	0	+	0.53	(0.515,0.57]	chrX	788779	1	SS3_PROX	SS3_PROX:INTRON	DOCK11	ENSG00000147251.16	ENST00000276202.9:ENST00000276204.10:ENST00000633080.1	protein_coding	protein_coding	protein_coding	protein_coding	2	34	2	2.26012	3.3375500000000002	4.41498	0.0160033	0.0106866	0.109464	0.0861859
chr19	5043032	5043130	7004161	0	+	0.55102	(0.515,0.57]	chr19	694826	14	INTRON	INTRON	KDM4B	ENSG00000127663.15	ENST00000159111.9:ENST00000611640.4:ENST00000381759.8:ENST00000536461.5	protein_coding	protein_coding	protein_coding	protein_coding	4	84	2	2.82916	3.3374949999999997	3.84583	4.25151e-4	1.82082e-4	0.018441	0.0122264
chr1	24659818	24659918	45916	0	+	0.38	(0.378,0.408]	chr1	5716	43	INTRON	INTRON	SRRM1	ENSG00000133226.18	ENST00000374389.8:ENST00000323848.14:ENST00000479034.5:ENST00000596378.1:ENST00000496882.5:ENST00000461768.5:ENST00000485541.1:ENST00000488317.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	28	2	2.45932	3.337475	4.21563	0.0346754	0.0315429	0.148144	0.13151
chr10	24601030	24601130	4580697	0	-	0.39	(0.378,0.408]	chr10	422115	1	SS3_PROX	SS3_PROX:INTRON	ARHGAP21	ENSG00000107863.20	ENST00000612832.4:ENST00000396432.7:ENST00000680286.1:ENST00000486374.5:ENST00000376410.7:ENST00000638156.1:ENST00000636789.1:ENST00000446003.5:ENST00000493154.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	28	2	2.45932	3.337475	4.21563	0.0346754	0.0315429	0.148144	0.13151
chr11	72757081	72757173	4979422	0	-	0.380435	(0.378,0.408]	chr11	470578	10	INTRON	INTRON	ARAP1:STARD10	ENSG00000186635.15:ENSG00000214530.10	ENST00000359373.9:ENST00000334805.11:ENST00000543304.5:ENST00000537351.5:ENST00000538536.5:ENST00000538437.5:ENST00000543089.1:ENST00000545082.5:ENST00000544767.5:ENST00000537947.5:ENST00000536728.5:ENST00000400925.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	28	2	2.45932	3.337475	4.21563	0.0346754	0.0315429	0.148144	0.13151
chr12	94349733	94349832	5388993	0	-	0.383838	(0.378,0.408]	chr12	513815	137	INTRON	INTRON	CEP83	ENSG00000173588.16	ENST00000397809.10:ENST00000339839.9:ENST00000547232.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	28	2	2.45932	3.337475	4.21563	0.0346754	0.0315429	0.148144	0.13151
chr14	102155859	102155959	5821442	0	+	0.39	(0.378,0.408]	chr14	552333	153	INTRON	INTRON	WDR20	ENSG00000140153.18	ENST00000557485.5:ENST00000335263.9:ENST00000424963.6:ENST00000322340.9:ENST00000556807.1:ENST00000555879.5:ENST00000561154.1:ENST00000342702.8:ENST00000558567.5:ENST00000299135.6:ENST00000454394.2:ENST00000556094.1:ENST00000556511.2:ENST00000557186.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	28	2	2.45932	3.337475	4.21563	0.0346754	0.0315429	0.148144	0.13151
chr17	21015550	21015650	6742884	0	-	0.39	(0.378,0.408]	chr17	662035	4	SS5_PROX	SS5_PROX:INTRON	USP22	ENSG00000124422.12	ENST00000261497.9:ENST00000537526.6:ENST00000455117.6:ENST00000579645.5:ENST00000582335.1:ENST00000577610.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	28	2	2.45932	3.337475	4.21563	0.0346754	0.0315429	0.148144	0.13151
chr20	37292750	37292849	7266808	0	+	0.393939	(0.378,0.408]	chr20	738497	27	INTRON	INTRON	MANBAL	ENSG00000101363.13	ENST00000397150.5:ENST00000373606.8:ENST00000397152.7	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	2.45932	3.337475	4.21563	0.0346754	0.0315429	0.148144	0.13151
chr3	113761088	113761188	1483714	0	+	0.4	(0.378,0.408]	chr3	154910	136	INTRON	INTRON	ATP6V1A	ENSG00000114573.10	ENST00000462855.1:ENST00000273398.8:ENST00000470455.5:ENST00000496747.5:ENST00000475322.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	28	2	2.45932	3.337475	4.21563	0.0346754	0.0315429	0.148144	0.13151
chr6	37288859	37288958	2855627	0	+	0.383838	(0.378,0.408]	chr6	269979	14	INTRON	INTRON	TBC1D22B	ENSG00000065491.8	ENST00000373491.3	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	2.45932	3.337475	4.21563	0.0346754	0.0315429	0.148144	0.13151
chrX	68535089	68535188	7674139	0	+	0.383838	(0.378,0.408]	chrX	785442	32	UTR3	UTR3:EXON_MRNA	YIPF6	ENSG00000181704.12	ENST00000374622.3:ENST00000462683.6	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	2.45932	3.337475	4.21563	0.0346754	0.0315429	0.148144	0.13151
chr4	186456805	186456905	2308280	0	-	0.42	(0.408,0.44]	chr4	223310	242	INTRON	INTRON	F11-AS1	ENSG00000251165.6	ENST00000505103.5:ENST00000657917.1:ENST00000508110.5:ENST00000508287.1	lncRNA	lncRNA	lncRNA	lncRNA	4	51	2	1.6546400000000001	3.33746	5.02028	0.0329965	0.00303216	0.145298	0.0493883
chr9	125364926	125365026	4199323	0	+	0.36	(0.35,0.378]	chr9	383314	23	UTR3	UTR3:EXON_MRNA	GAPVD1	ENSG00000165219.23	ENST00000297933.11:ENST00000470056.5:ENST00000394104.6	protein_coding	protein_coding	protein_coding	protein_coding	3	51	2	2.28182	3.3374250000000005	4.39303	0.0237246	0.00637232	0.118716	0.0724821
chr21	46408712	46408811	7422098	0	+	0.464646	(0.44,0.476]	chr21	756856	59	INTRON	INTRON	PCNT	ENSG00000160299.18	ENST00000695558.1:ENST00000359568.10:ENST00000480896.5	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	2.66433	3.3373549999999996	4.01038	0.0433743	0.0194358	0.148082	0.119831
chr5	96983407	96983504	2435296	0	+	0.443299	(0.44,0.476]	chr5	233988	31	INTRON	INTRON	LNPEP	ENSG00000113441.16	ENST00000231368.10:ENST00000395770.3	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	2.66433	3.3373549999999996	4.01038	0.0433743	0.0194358	0.148082	0.119831
chr13	28240935	28241035	5461858	0	+	0.47	(0.44,0.476]	chr13	523271	5	INTRON	INTRON	PAN3	ENSG00000152520.14	ENST00000503791.5:ENST00000380958.8:ENST00000399613.1:ENST00000483842.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	48	2	1.61163	3.337255	5.06288	0.0598319	0.00102416	0.169278	0.0294041
chr4	67533989	67534088	2153399	0	-	0.454545	(0.44,0.476]	chr4	211997	27	INTRON	INTRON	CENPC	ENSG00000145241.11	ENST00000273853.11:ENST00000506882.5:ENST00000510189.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	82	2	2.88062	3.3372450000000002	3.79387	0.001878	2.19099e-4	0.039073	0.0129737
chr1	155856746	155856846	564449	0	-	0.39	(0.378,0.408]	chr1	67394	2	SS5_PROX	SS5_PROX:INTRON	GON4L	ENSG00000116580.20	ENST00000368331.6:ENST00000615926.4:ENST00000437809.5:ENST00000271883.9:ENST00000361040.9:ENST00000622608.2:ENST00000471341.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	28	2	2.26252	3.337105	4.41169	0.056222	0.0199606	0.18407	0.109608
chr11	96324584	96324684	5024182	0	-	0.38	(0.378,0.408]	chr11	473809	2307	INTRON	INTRON	MAML2	ENSG00000184384.14	ENST00000524717.6	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	2.26252	3.337105	4.41169	0.056222	0.0199606	0.18407	0.109608
chr11	125646611	125646709	4883203	0	+	0.397959	(0.378,0.408]	chr11	456600	16	INTRON	INTRON	CHEK1	ENSG00000149554.14	ENST00000438015.7:ENST00000427383.6:ENST00000428830.6:ENST00000544373.5:ENST00000278916.8:ENST00000532449.6:ENST00000534070.5:ENST00000524737.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	28	2	2.26252	3.337105	4.41169	0.056222	0.0199606	0.18407	0.109608
chr13	72764107	72764204	5616251	0	-	0.402062	(0.378,0.408]	chr13	535680	1	INTRON	INTRON	DIS3	ENSG00000083520.15	ENST00000377767.9:ENST00000377780.8:ENST00000545453.5:ENST00000490646.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	28	2	2.26252	3.337105	4.41169	0.056222	0.0199606	0.18407	0.109608
chr16	56450586	56450686	6491514	0	-	0.38	(0.378,0.408]	chr16	627787	1	SS5_PROX	SS5_PROX:INTRON	NUDT21	ENSG00000167005.14	ENST00000300291.10:ENST00000566340.5:ENST00000567110.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	28	2	2.26252	3.337105	4.41169	0.056222	0.0199606	0.18407	0.109608
chr19	21181427	21181527	7040357	0	+	0.39	(0.378,0.408]	chr19	701956	56	INTRON	INTRON	ZNF431	ENSG00000196705.8	ENST00000600692.5:ENST00000599296.5:ENST00000594425.5:ENST00000311048.11:ENST00000598331.1	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	2.26252	3.337105	4.41169	0.056222	0.0199606	0.18407	0.109608
chr20	32376546	32376646	7256008	0	+	0.4	(0.378,0.408]	chr20	737076	41	INTRON	INTRON	ASXL1	ENSG00000171456.21	ENST00000651418.1:ENST00000375687.10:ENST00000613218.4:ENST00000644587.1:ENST00000620121.4:ENST00000646985.1:ENST00000643168.1:ENST00000306058.9:ENST00000645688.1:ENST00000470145.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	28	2	2.26252	3.337105	4.41169	0.056222	0.0199606	0.18407	0.109608
chr3	21549193	21549293	1387400	0	+	0.4	(0.378,0.408]	chr3	145351	58	INTRON	INTRON	ZNF385D-AS1	ENSG00000225542.2	ENST00000662195.1:ENST00000412369.1	lncRNA	lncRNA	lncRNA	lncRNA	1	28	2	2.26252	3.337105	4.41169	0.056222	0.0199606	0.18407	0.109608
chr4	139331973	139332073	2049996	0	+	0.4	(0.378,0.408]	chr4	203286	294	INTRON	INTRON	NAA15	ENSG00000164134.13	ENST00000296543.10:ENST00000398947.1:ENST00000482087.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	28	2	2.26252	3.337105	4.41169	0.056222	0.0199606	0.18407	0.109608
chr9	123489907	123490007	4341606	0	-	0.4	(0.378,0.408]	chr9	399056	280	INTRON	INTRON	DENND1A	ENSG00000119522.17	ENST00000373624.6:ENST00000473039.5:ENST00000394215.7:ENST00000373620.7:ENST00000491650.5:ENST00000497135.5:ENST00000373618.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	28	2	2.26252	3.337105	4.41169	0.056222	0.0199606	0.18407	0.109608
chr17	22148063	22148163	6579144	0	+	0.36	(0.35,0.378]	chr17	639556	568	INTRON	INTRON	UBBP4	ENSG00000263563.7	ENST00000648259.1:ENST00000688301.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	2	39	2	2.10859	3.337045	4.5655	0.0272722	0.0155464	0.136494	0.100909
chr1	182869439	182869539	273295	0	+	0.52	(0.515,0.57]	chr1	31933	20	INTRON	INTRON	DHX9	ENSG00000135829.17	ENST00000367549.4	protein_coding	protein_coding	protein_coding	protein_coding	2	38	2	2.38476	3.336985	4.28921	0.0110593	0.00990051	0.0877296	0.0873897
chr5	79644342	79644435	2399055	0	+	0.290323	(0.28,0.32]	chr5	231723	11	INTRON	INTRON	TENT2	ENSG00000164329.14	ENST00000423041.6:ENST00000504233.5:ENST00000453514.6:ENST00000428308.6:ENST00000296783.7	protein_coding	protein_coding	protein_coding	protein_coding	4	123	2	2.81789	3.33694	3.85599	7.16126e-4	4.63052e-4	0.0244108	0.0198709
chr19	13125709	13125808	7022722	0	+	0.424242	(0.408,0.44]	chr19	698366	69	INTRON	INTRON	NACC1	ENSG00000160877.6	ENST00000586171.2:ENST00000292431.5	protein_coding	protein_coding	protein_coding	protein_coding	3	83	2	2.82511	3.33685	3.84859	0.00189528	2.66911e-4	0.0402736	0.0149989
chrX	152728431	152728531	7909970	0	-	0.4	(0.378,0.408]	chrX	804877	2	SS3_PROX	SS3_PROX:INTRON	CSAG1	ENSG00000198930.13	ENST00000370287.7:ENST00000452779.3:ENST00000361211.9:ENST00000370291.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	55	2	2.0102	3.33679	4.66338	0.0103469	0.00940766	0.0861183	0.0850389
chr17	74204788	74204887	6672385	0	+	0.535354	(0.515,0.57]	chr17	651049	7	EXON_MRNA	EXON_MRNA:INTRON	RPL38	ENSG00000172809.13	ENST00000439590.6:ENST00000530646.1:ENST00000311111.11:ENST00000584577.5:ENST00000534490.5:ENST00000533498.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	41	2	2.6325	3.3366800000000003	4.04086	0.0197045	0.00439001	0.120063	0.0585064
chr18	13019805	13019905	6876863	0	+	0.42	(0.408,0.44]	chr18	681391	2	INTRON	INTRON	CEP192	ENSG00000101639.19	ENST00000325971.12:ENST00000506447.5:ENST00000589596.5:ENST00000513432.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	98	2	2.76768	3.336575	3.90547	6.71664e-4	2.03612e-4	0.0235155	0.0129859
chr5	53958717	53958817	2617391	0	-	0.28	[0,0.28]	chr5	248835	467	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	179	2	2.56899	3.3365299999999998	4.10407	6.89342e-4	2.40631e-4	0.0239822	0.0142566
chr4	1887595	1887690	1910732	0	+	0.431579	(0.408,0.44]	chr4	191708	2	UTR5	UTR5:EXON_MRNA:INTRON	NSD2	ENSG00000109685.19	ENST00000508803.6:ENST00000507820.5:ENST00000508355.5:ENST00000514045.5:ENST00000515806.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	63	2	2.84077	3.3364700000000003	3.83217	0.0132196	1.79883e-4	0.0940535	0.0116696
chr15	87430883	87430981	6253856	0	-	0.326531	(0.32,0.35]	chr15	596796	5	INTRON	INTRON	ENSG00000259560	ENSG00000259560.2	ENST00000665121.1:ENST00000656130.1	lncRNA	lncRNA	lncRNA	lncRNA	1	34	2	2.51061	3.336235	4.16186	0.0364463	0.026079	0.138959	0.133676
chr2	20698673	20698773	1077877	0	-	0.33	(0.32,0.35]	chr2	115127	112	INTRON	INTRON	LDAH	ENSG00000118961.15	ENST00000619656.4:ENST00000541941.5:ENST00000440866.6:ENST00000435420.6:ENST00000403006.6:ENST00000237822.8:ENST00000381090.7:ENST00000470099.1:ENST00000626491.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	34	2	2.51061	3.336235	4.16186	0.0364463	0.026079	0.138959	0.133676
chr9	124951006	124951106	4350034	0	-	0.4	(0.378,0.408]	chr9	399421	85	UTR3	UTR3:EXON_MRNA	SCAI	ENSG00000173611.18	ENST00000336505.11	protein_coding	protein_coding	protein_coding	protein_coding	2	39	2	2.35527	3.33613	4.31699	0.0250408	0.0121511	0.12011	0.0963966
chr7	127372665	127372753	3634042	0	-	0.352273	(0.35,0.378]	chr7	337754	5	INTRON	INTRON	ZNF800	ENSG00000048405.11	ENST00000485577.1:ENST00000265827.8:ENST00000393313.5:ENST00000393312.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	66	2	3.17244	3.336055	3.49967	0.00487788	9.80974e-4	0.0607461	0.0287765
chr1	155552667	155552766	562795	0	-	0.272727	[0,0.28]	chr1	67117	307	INTRON	INTRON	ASH1L	ENSG00000116539.14	ENST00000676814.1:ENST00000392403.8:ENST00000368346.7:ENST00000677213.1:ENST00000678117.1:ENST00000679097.1:ENST00000679333.1:ENST00000679133.1:ENST00000548830.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	56	2	1.66929	3.33596	5.00263	0.0537506	0.013055	0.180803	0.093385
chr8	102384002	102384102	4012469	0	-	0.3	(0.28,0.32]	chr8	367237	220	INTRON	INTRON	UBR5	ENSG00000104517.13	ENST00000520539.6:ENST00000220959.8:ENST00000521922.5	protein_coding	protein_coding	protein_coding	protein_coding	2	46	2	2.42868	3.33594	4.2432	0.0479043	0.0105331	0.153019	0.0908969
chr1	25822313	25822411	49163	0	+	0.418367	(0.408,0.44]	chr1	6114	9	UTR5	UTR5:EXON_MRNA:INTRON	MTFR1L	ENSG00000117640.18	ENST00000424294.5:ENST00000533762.5:ENST00000474295.5:ENST00000529116.5:ENST00000488327.6:ENST00000472643.5:ENST00000374303.7:ENST00000494293.1:ENST00000469815.5:ENST00000526894.5:ENST00000478284.5:ENST00000524618.5:ENST00000374307.9:ENST00000528624.5:ENST00000374301.7:ENST00000525713.5:ENST00000464008.6:ENST00000526158.5:ENST00000530599.5:ENST00000374300.7:ENST00000466284.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	63	2	3.14706	3.335885	3.52471	0.00382411	0.00112428	0.0562562	0.0306963
chrX	55022366	55022465	7823217	0	-	0.262626	[0,0.28]	chrX	798451	7	INTRON	INTRON	ALAS2	ENSG00000158578.21	ENST00000396198.7:ENST00000650242.1:ENST00000335854.8:ENST00000463868.5:ENST00000493869.2:ENST00000477869.6:ENST00000455688.2:ENST00000644983.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	118	2	2.57049	3.3358749999999997	4.10126	0.00973452	1.06299e-4	0.0832222	0.00873918
chr1	23326727	23326827	399412	0	-	0.48	(0.476,0.515]	chr1	47865	26	INTRON	INTRON	HNRNPR	ENSG00000125944.21	ENST00000478691.5:ENST00000302271.11:ENST00000374616.7:ENST00000374612.5:ENST00000675048.1:ENST00000606561.5:ENST00000427764.3:ENST00000463552.5:ENST00000470941.5:ENST00000476451.2	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	2.69967	3.33584	3.97201	0.030904	0.0195838	0.143385	0.109483
chr6	136732176	136732276	3235038	0	-	0.49	(0.476,0.515]	chr6	300700	112	INTRON	INTRON	MAP3K5	ENSG00000197442.10	ENST00000359015.5	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	2.69967	3.33584	3.97201	0.030904	0.0195838	0.143385	0.109483
chr4	144010448	144010548	2251660	0	-	0.29	(0.28,0.32]	chr4	219988	16	INTRON	INTRON	GYPB	ENSG00000250361.9	ENST00000502664.6:ENST00000506679.5:ENST00000429670.3:ENST00000507009.5:ENST00000513128.5:ENST00000505583.5:ENST00000506516.6:ENST00000513557.5:ENST00000513677.5:ENST00000511198.5:ENST00000504951.6:ENST00000510196.6:ENST00000503255.5:ENST00000638448.1:ENST00000508618.5:ENST00000508841.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	72	2	1.27925	3.3358000000000003	5.39235	0.0642509	0.0024844	0.19963	0.0446195
chr14	68883588	68883667	5914087	0	-	0.379747	(0.378,0.408]	chr14	561858	2	SS3_PROX	SS3_PROX:INTRON	ACTN1	ENSG00000072110.16	ENST00000394419.9:ENST00000684638.1:ENST00000683780.1:ENST00000683198.1:ENST00000684639.1:ENST00000682522.1:ENST00000684287.1:ENST00000682378.1:ENST00000684598.1:ENST00000684146.1:ENST00000682130.1:ENST00000683267.1:ENST00000683069.1:ENST00000682381.1:ENST00000682298.1:ENST00000684340.1:ENST00000682331.1:ENST00000682291.1:ENST00000683225.1:ENST00000684182.1:ENST00000193403.10:ENST00000556083.1:ENST00000684713.1:ENST00000438964.6:ENST00000679147.1:ENST00000376839.7:ENST00000682559.1:ENST00000538545.6:ENST00000683342.1:ENST00000544964.6:ENST00000553290.1:ENST00000556343.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	41	2	1.8252	3.3357349999999997	4.84627	0.0619563	0.00254319	0.174514	0.0465056
chr9	97522642	97522742	4171798	0	+	0.52	(0.515,0.57]	chr9	380069	205	INTRON	INTRON	TMOD1	ENSG00000136842.14	ENST00000395211.6:ENST00000259365.9	protein_coding	protein_coding	protein_coding	protein_coding	2	37	2	2.27238	3.33569	4.399	0.0161808	0.00708863	0.101453	0.0754923
chr21	37388399	37388499	7406438	0	+	0.3	(0.28,0.32]	chr21	754850	129	INTRON	INTRON	DYRK1A	ENSG00000157540.22	ENST00000646523.1:ENST00000647425.1:ENST00000647188.2:ENST00000647504.1:ENST00000644942.1:ENST00000338785.8:ENST00000643624.1:ENST00000643551.1:ENST00000426672.6:ENST00000398960.7	protein_coding	protein_coding	protein_coding	protein_coding	4	59	2	1.51776	3.33567	5.15358	0.0528371	0.0052282	0.178899	0.0633615
chr6	119346063	119346163	3205779	0	-	0.42	(0.408,0.44]	chr6	298328	387	INTRON	INTRON	MAN1A1	ENSG00000111885.7	ENST00000368468.4	protein_coding	protein_coding	protein_coding	protein_coding	6	150	2	3.0735	3.33558	3.59766	6.08042e-5	4.03962e-5	0.00685407	0.00515782
chr10	831377	831477	4541569	0	-	0.46	(0.44,0.476]	chr10	419242	4	SS3_PROX	SS3_PROX:INTRON	LARP4B	ENSG00000107929.16	ENST00000688365.1:ENST00000316157.8:ENST00000690516.1:ENST00000689323.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	57	2	1.58453	3.33556	5.08659	0.0293513	0.00226401	0.142102	0.0425438
chr3	120093526	120093618	1795450	0	-	0.326087	(0.32,0.35]	chr3	180294	2	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GSK3B	ENSG00000082701.17	ENST00000264235.13:ENST00000316626.6:ENST00000678439.1:ENST00000650344.2:ENST00000677788.1:ENST00000678245.1:ENST00000677169.1:ENST00000677128.1:ENST00000677530.1:ENST00000677034.1:ENST00000676743.1:ENST00000677338.1:ENST00000677903.1:ENST00000677423.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	44	2	2.49929	3.3355499999999996	4.17181	0.04531	0.00776612	0.149888	0.0787356
chr7	152389954	152390054	3680833	0	-	0.35	(0.32,0.35]	chr7	341660	309	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000682301.1:ENST00000452749.2:ENST00000680867.1:ENST00000683800.1:ENST00000684278.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	44	2	2.49929	3.3355499999999996	4.17181	0.04531	0.00776612	0.149888	0.0787356
chr8	129433792	129433892	4059609	0	-	0.3	(0.28,0.32]	chr8	369584	312	INTRON	INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1:ENST00000676273.1:ENST00000667643.1:ENST00000668791.1:ENST00000663716.1:ENST00000663572.1:ENST00000676148.1:ENST00000667962.1:ENST00000674877.1:ENST00000675316.1:ENST00000674656.1:ENST00000446592.7:ENST00000667341.1:ENST00000675186.1:ENST00000652971.1:ENST00000661447.1:ENST00000674863.1:ENST00000675498.1:ENST00000675527.1:ENST00000676108.1:ENST00000657647.1:ENST00000675589.1:ENST00000675913.1:ENST00000675109.1:ENST00000671632.1:ENST00000671311.1:ENST00000676099.1:ENST00000660652.1:ENST00000675522.1:ENST00000675183.1:ENST00000658861.1:ENST00000663991.1:ENST00000675044.1:ENST00000675435.1:ENST00000674639.1:ENST00000676069.1:ENST00000675532.1:ENST00000674762.1:ENST00000523151.6:ENST00000675948.1:ENST00000665364.1:ENST00000657251.1:ENST00000675166.1:ENST00000674883.1:ENST00000675867.1:ENST00000674580.1:ENST00000675393.1:ENST00000520048.1:ENST00000674906.1:ENST00000676030.1:ENST00000670588.1:ENST00000675072.1:ENST00000664936.1:ENST00000652914.1:ENST00000657069.1	lncRNA	lncRNA	lncRNA	lncRNA	3	58	2	1.64432	3.33549	5.02666	0.0606133	0.0027935	0.171142	0.0488769
chr10	50369417	50369517	4618139	0	-	0.44	(0.408,0.44]	chr10	425422	247	INTRON	INTRON	SGMS1	ENSG00000198964.14	ENST00000429490.5:ENST00000361781.7:ENST00000619438.4:ENST00000492601.2:ENST00000609445.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	115	2	2.54385	3.335475	4.1271	0.00114553	3.62655e-5	0.0308287	0.00482747
chr6	35841354	35841451	3088006	0	-	0.371134	(0.35,0.378]	chr6	288814	26	INTRON	INTRON	SRPK1	ENSG00000096063.16	ENST00000373825.7:ENST00000423325.6:ENST00000346162.10:ENST00000361690.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	89	2	2.73164	3.3354049999999997	3.93917	0.00387645	1.19694e-4	0.0543578	0.00936986
chr1	32164509	32164609	64030	0	+	0.36	(0.35,0.378]	chr1	8127	8	INTRON	INTRON	KPNA6	ENSG00000025800.14	ENST00000373625.8:ENST00000471599.5:ENST00000446515.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	66	2	3.21456	3.335385	3.45621	0.00420814	0.0011842	0.0572185	0.031662
chr7	5058868	5058967	3271850	0	+	0.363636	(0.35,0.378]	chr7	304071	7	INTRON	INTRON	RBAK	ENSG00000146587.18	ENST00000353796.7:ENST00000396912.2:ENST00000476992.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	66	2	3.21456	3.335385	3.45621	0.00420814	0.0011842	0.0572185	0.031662
chr10	63254257	63254357	4633270	0	-	0.39	(0.378,0.408]	chr10	426215	339	INTRON	INTRON	JMJD1C	ENSG00000171988.20	ENST00000399262.7:ENST00000402544.5:ENST00000542921.5:ENST00000469152.5:ENST00000489372.4:ENST00000633035.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	41	2	2.56408	3.3353450000000002	4.10661	0.0399023	0.00566993	0.143072	0.0678837
chr4	126665674	126665774	2237366	0	-	0.36	(0.35,0.378]	chr4	219023	2002	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	14	284	2	2.64456	3.335235	4.02591	1.76152e-5	7.37166e-6	0.00319546	0.00205092
chr1	180659763	180659863	269873	0	+	0.51	(0.476,0.515]	chr1	31614	271	INTRON	INTRON	XPR1	ENSG00000143324.14	ENST00000367590.9:ENST00000367589.3	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	2.65268	3.335225	4.01777	0.0411361	0.0201975	0.1451	0.121243
chr16	30705699	30705797	6338713	0	+	0.510204	(0.476,0.515]	chr16	607729	10	INTRON	INTRON	SRCAP	ENSG00000080603.17	ENST00000262518.9	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	2.65268	3.335225	4.01777	0.0411361	0.0201975	0.1451	0.121243
chr18	9248018	9248118	6870056	0	+	0.51	(0.476,0.515]	chr18	680622	81	INTRON	INTRON	ANKRD12	ENSG00000101745.17	ENST00000262126.9:ENST00000400020.7:ENST00000546007.6:ENST00000359158.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	28	2	2.65268	3.335225	4.01777	0.0411361	0.0201975	0.1451	0.121243
chr20	63212666	63212765	7362746	0	-	0.494949	(0.476,0.515]	chr20	751230	85	INTRON	INTRON	YTHDF1	ENSG00000149658.18	ENST00000370339.8:ENST00000370334.4	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	2.65268	3.335225	4.01777	0.0411361	0.0201975	0.1451	0.121243
chr1	203813105	203813205	296855	0	+	0.31	(0.28,0.32]	chr1	34134	97	INTRON	INTRON	ZC3H11A:ZBED6	ENSG00000058673.17:ENSG00000257315.3	ENST00000367210.3:ENST00000453771.5:ENST00000432282.5:ENST00000638800.1:ENST00000367214.5:ENST00000639812.1:ENST00000367212.7:ENST00000332127.8:ENST00000550078.2:ENST00000495527.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	43	2	2.08149	3.33512	4.58875	0.031124	0.0230574	0.143644	0.118056
chr10	11554710	11554810	4555494	0	-	0.3	(0.28,0.32]	chr10	420447	226	INTRON	INTRON	USP6NL	ENSG00000148429.15	ENST00000609104.6:ENST00000379237.6	protein_coding	protein_coding	protein_coding	protein_coding	2	43	2	2.08149	3.33512	4.58875	0.031124	0.0230574	0.143644	0.118056
chr14	30999963	31000063	5857609	0	-	0.32	(0.28,0.32]	chr14	556508	356	INTRON	INTRON	STRN3	ENSG00000196792.12	ENST00000355683.9:ENST00000357479.10:ENST00000555358.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	43	2	2.08149	3.33512	4.58875	0.031124	0.0230574	0.143644	0.118056
chr20	49944413	49944510	7285727	0	+	0.309278	(0.28,0.32]	chr20	741192	6	EXON_MRNA	EXON_MRNA:INTRON	RNF114	ENSG00000124226.11	ENST00000623528.3:ENST00000622999.3:ENST00000244061.6:ENST00000625177.3:ENST00000623732.3:ENST00000622920.1:ENST00000624666.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	43	2	2.08149	3.33512	4.58875	0.031124	0.0230574	0.143644	0.118056
chr5	614131	614230	2313393	0	+	0.313131	(0.28,0.32]	chr5	223834	13	INTRON	INTRON	CEP72	ENSG00000112877.8	ENST00000264935.6	protein_coding	protein_coding	protein_coding	protein_coding	2	43	2	2.08149	3.33512	4.58875	0.031124	0.0230574	0.143644	0.118056
chr16	75405873	75405973	6529023	0	-	0.42	(0.408,0.44]	chr16	632332	103	INTRON	INTRON	CFDP1	ENSG00000153774.9	ENST00000283882.4:ENST00000566901.5:ENST00000565646.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	83	2	2.57295	3.33505	4.09715	0.00640423	4.3007e-5	0.0694534	0.00530629
chr1	243241209	243241309	668578	0	-	0.41	(0.408,0.44]	chr1	79325	155	INTRON	INTRON	CEP170	ENSG00000143702.16	ENST00000366544.5:ENST00000366543.5:ENST00000366542.6:ENST00000522191.5:ENST00000523424.5:ENST00000522522.5:ENST00000522995.1:ENST00000523581.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	28	2	2.66579	3.3348199999999997	4.00385	0.0454568	0.019342	0.149888	0.119831
chr12	121456525	121456625	5437959	0	-	0.44	(0.408,0.44]	chr12	519990	28	INTRON	INTRON	KDM2B	ENSG00000089094.20	ENST00000377071.9:ENST00000377069.8:ENST00000611216.4:ENST00000538503.5:ENST00000542973.5:ENST00000543025.5:ENST00000538243.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	28	2	2.66579	3.3348199999999997	4.00385	0.0454568	0.019342	0.149888	0.119831
chr15	58840105	58840205	6037433	0	+	0.42	(0.408,0.44]	chr15	574944	78	INTRON	INTRON	MINDY2	ENSG00000128923.11	ENST00000316848.9:ENST00000560289.5:ENST00000559228.6:ENST00000450403.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	28	2	2.66579	3.3348199999999997	4.00385	0.0454568	0.019342	0.149888	0.119831
chr18	2690761	2690861	6865220	0	+	0.41	(0.408,0.44]	chr18	679978	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	SMCHD1	ENSG00000101596.17	ENST00000320876.11:ENST00000688342.1:ENST00000684915.1:ENST00000581226.1:ENST00000693213.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	28	2	2.66579	3.3348199999999997	4.00385	0.0454568	0.019342	0.149888	0.119831
chr18	26085974	26086027	6959695	0	-	0.433962	(0.408,0.44]	chr18	688507	2	EXON_LNCRNA	EXON_LNCRNA:INTRON	SS18	ENSG00000141380.14	ENST00000415083.7:ENST00000542420.6:ENST00000579640.5:ENST00000269138.9:ENST00000269137.11:ENST00000585121.5:ENST00000539244.6:ENST00000585241.5:ENST00000578954.5:ENST00000579061.5:ENST00000577636.5:ENST00000584083.5:ENST00000578700.5:ENST00000582792.5:ENST00000581021.5:ENST00000577572.5:ENST00000582448.5:ENST00000581570.5:ENST00000577751.5:ENST00000580751.5:ENST00000580642.2:ENST00000578595.1:ENST00000583595.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	28	2	2.66579	3.3348199999999997	4.00385	0.0454568	0.019342	0.149888	0.119831
chr7	64347093	64347192	3319775	0	+	0.414141	(0.408,0.44]	chr7	308636	98	INTRON	INTRON	ZNF736	ENSG00000234444.10	ENST00000355095.8:ENST00000423484.3	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	2.66579	3.3348199999999997	4.00385	0.0454568	0.019342	0.149888	0.119831
chr9	137682413	137682512	4224119	0	+	0.424242	(0.408,0.44]	chr9	388202	11	INTRON	INTRON	EHMT1	ENSG00000181090.21	ENST00000462484.5:ENST00000371394.6:ENST00000630754.2:ENST00000460843.6:ENST00000626216.2:ENST00000629335.2:ENST00000637335.1:ENST00000636376.1:ENST00000637655.1:ENST00000636027.1:ENST00000492232.5:ENST00000460486.3:ENST00000636081.1:ENST00000637161.1:ENST00000629417.1:ENST00000637662.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	28	2	2.66579	3.3348199999999997	4.00385	0.0454568	0.019342	0.149888	0.119831
chr7	10626348	10626448	3483043	0	-	0.38	(0.378,0.408]	chr7	325772	644	INTRON	INTRON	MGC4859	ENSG00000283117.1	ENST00000634803.1	lncRNA	lncRNA	lncRNA	lncRNA	4	115	2	2.89518	3.33477	3.77436	0.00190046	1.2222e-5	0.0393643	0.00260379
chr2	97084861	97084945	1183127	0	-	0.416667	(0.408,0.44]	chr2	126825	2	INTRON	INTRON	FAHD2B	ENSG00000144199.12	ENST00000414820.6:ENST00000272610.3:ENST00000474849.1:ENST00000463096.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	51	2	1.96534	3.3347200000000004	4.7041	0.0216499	0.00381677	0.11491	0.0562562
chr6	161058140	161058240	3025159	0	+	0.37	(0.35,0.378]	chr6	282325	78	INTRON	INTRON	MAP3K4	ENSG00000085511.20	ENST00000366919.6:ENST00000392142.9:ENST00000542952.5:ENST00000366920.6:ENST00000348824.11:ENST00000544041.5:ENST00000490904.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	89	2	2.69904	3.33472	3.9704	0.00438476	1.01653e-4	0.0585064	0.00850967
chr17	57990291	57990390	6799879	0	-	0.313131	(0.28,0.32]	chr17	671422	6	EXON_LNCRNA	EXON_LNCRNA:SS3_PROX:SS5_PROX:INTRON	ENSG00000266086:ENSG00000264112	ENSG00000266086.3:ENSG00000264112.1	ENST00000578794.2:ENST00000665125.1:ENST00000582096.1:ENST00000577267.1:ENST00000585065.1	protein_coding	nonsense_mediated_decay	protein_coding:lncRNA	nonsense_mediated_decay:lncRNA:processed_transcript	2	76	2	3.16101	3.3346850000000003	3.50836	0.0061861	0.00117393	0.0677395	0.0316446
chr7	139382739	139382839	3437824	0	+	0.4	(0.378,0.408]	chr7	320340	62	INTRON	INTRON	LUC7L2:FMC1-LUC7L2	ENSG00000146963.18:ENSG00000269955.2	ENST00000541170.7:ENST00000541515.3:ENST00000608368.5:ENST00000619796.4:ENST00000354926.9:ENST00000456182.5:ENST00000263545.7:ENST00000463912.5:ENST00000498518.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	69	2	1.85968	3.33468	4.80968	0.0075228099999999996	0.00679828	0.0773151	0.0711802
chr8	123329678	123329778	4041941	0	-	0.39	(0.378,0.408]	chr8	368658	7	INTRON	INTRON	ATAD2	ENSG00000156802.13	ENST00000287394.10:ENST00000517666.5:ENST00000521903.5:ENST00000519124.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	51	2	1.82258	3.334425	4.84627	0.0341279	0.00254319	0.135102	0.0465056
chr3	128752739	128752839	1497476	0	+	0.24	[0,0.28]	chr3	156330	260	INTRON	INTRON	RAB7A	ENSG00000075785.14	ENST00000676214.1:ENST00000675864.1:ENST00000675712.1:ENST00000676425.1:ENST00000490093.6:ENST00000675342.1:ENST00000265062.8:ENST00000674748.1:ENST00000493186.6:ENST00000482525.5:ENST00000491681.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	142	2	3.06849	3.33434	3.60019	0.00172089	2.76554e-4	0.0374701	0.0148174
chr15	68092286	68092386	6056336	0	+	0.52	(0.515,0.57]	chr15	576567	40	INTRON	INTRON	PIAS1	ENSG00000033800.14	ENST00000564915.5:ENST00000249636.11:ENST00000562190.1:ENST00000545237.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	107	2	2.62884	3.3343299999999996	4.03982	2.10022e-4	6.5518e-5	0.0126685	0.00715707
chr16	23886678	23886778	6324267	0	+	0.52	(0.515,0.57]	chr16	605697	175	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000645517.1:ENST00000498739.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	84	2	2.69048	3.334245	3.97801	8.78655e-4	9.14583e-5	0.0269932	0.00850096
chr1	150380514	150380614	221860	0	+	0.47	(0.44,0.476]	chr1	25051	152	INTRON	INTRON	RPRD2	ENSG00000163125.16	ENST00000492220.1:ENST00000369068.5:ENST00000401000.8:ENST00000369067.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	37	2	2.14573	3.3342150000000004	4.5227	0.0238593	0.0128818	0.129075	0.0926667
chr4	159134997	159135097	2073819	0	+	0.4	(0.378,0.408]	chr4	205172	304	INTRON	INTRON	RAPGEF2	ENSG00000109756.10	ENST00000644474.1:ENST00000691494.1:ENST00000505478.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	136	2	2.99225	3.33417	3.67609	6.32264e-4	2.93277e-5	0.0231174	0.00430415
chr13	30464040	30464130	5569921	0	-	0.466667	(0.44,0.476]	chr13	532383	5	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HMGB1	ENSG00000189403.15	ENST00000341423.10:ENST00000405805.5:ENST00000339872.8:ENST00000399489.5:ENST00000399494.5:ENST00000326004.4:ENST00000468384.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	41	2	2.13779	3.334065	4.53034	0.0264596	0.00672609	0.122506	0.0738715
chr1	51876883	51876983	455279	0	-	0.55	(0.515,0.57]	chr1	54631	141	INTRON	INTRON	NRDC	ENSG00000078618.23	ENST00000354831.11:ENST00000539524.5:ENST00000352171.12:ENST00000491410.1:ENST00000468722.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	71	2	2.6325	3.33406	4.03562	0.00439001	4.64806e-5	0.0585064	0.00555027
chr10	993257	993356	4379042	0	+	0.515152	(0.476,0.515]	chr10	403823	2	INTRON	INTRON	GTPBP4	ENSG00000107937.19	ENST00000360803.9:ENST00000491635.1:ENST00000360059.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	48	2	1.7425	3.333895	4.92529	0.0417334	0.00180221	0.147007	0.0392772
chr20	3347225	3347325	7307713	0	-	0.29	(0.28,0.32]	chr20	744173	31	INTRON	INTRON	DNAAF9	ENSG00000088854.13	ENST00000252032.10	protein_coding	protein_coding	protein_coding	protein_coding	3	103	2	2.74175	3.3338400000000004	3.92593	0.00457205	1.77822e-4	0.0595107	0.0116289
chr6	27811118	27811209	2839012	0	+	0.417582	(0.408,0.44]	chr6	266438	8	UTR3	UTR3:EXON_MRNA	H3C10	ENSG00000278828.2	ENST00000369163.4	protein_coding	protein_coding	protein_coding	protein_coding	5	58	2	1.70933	3.33375	4.95817	0.0189186	0.00372419	0.118303	0.0535094
chr6	167904180	167904280	3035122	0	+	0.48	(0.476,0.515]	chr6	282779	14	INTRON	INTRON	AFDN	ENSG00000130396.21	ENST00000683244.1:ENST00000351017.9:ENST00000344191.8:ENST00000392112.5:ENST00000392108.7:ENST00000400822.7:ENST00000447894.6:ENST00000366809.6:ENST00000366806.6:ENST00000423229.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	130	2	2.89208	3.33373	3.77538	4.83014e-4	1.16476e-5	0.0203603	0.00251968
chr17	50746902	50747002	6627263	0	+	0.3	(0.28,0.32]	chr17	647244	2	SS5_PROX	SS5_PROX:INTRON	LUC7L3	ENSG00000108848.16	ENST00000393227.6:ENST00000505658.6:ENST00000240304.5:ENST00000508482.5:ENST00000504065.5:ENST00000509487.1:ENST00000511974.5:ENST00000513969.5:ENST00000503728.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	35	2	2.32871	3.33367	4.33863	0.0581621	0.0207276	0.167723	0.122348
chr18	62723053	62723153	6922640	0	+	0.32	(0.28,0.32]	chr18	685172	54	INTRON	INTRON	PHLPP1	ENSG00000081913.14	ENST00000262719.10	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	2.32871	3.33367	4.33863	0.0581621	0.0207276	0.167723	0.122348
chr3	47671909	47672007	1683953	0	-	0.306122	(0.28,0.32]	chr3	172014	8	INTRON	INTRON	SMARCC1	ENSG00000173473.11	ENST00000254480.10:ENST00000425518.5:ENST00000483847.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	35	2	2.32871	3.33367	4.33863	0.0581621	0.0207276	0.167723	0.122348
chr17	82632818	82632918	6853536	0	-	0.45	(0.44,0.476]	chr17	679380	14	INTRON	INTRON	WDR45B	ENSG00000141580.16	ENST00000392325.9:ENST00000572583.5:ENST00000571835.5:ENST00000573616.5:ENST00000571817.5:ENST00000574828.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	51	2	1.70242	3.333665	4.96491	0.0282713	0.0034249	0.137721	0.0517761
chr7	43688910	43689010	3525972	0	-	0.34	(0.32,0.35]	chr7	328779	228	INTRON	INTRON	COA1	ENSG00000106603.20	ENST00000415076.6:ENST00000446330.6:ENST00000446564.5:ENST00000438444.5:ENST00000223336.11:ENST00000310564.10:ENST00000415798.5:ENST00000431651.5:ENST00000451651.5:ENST00000418140.5:ENST00000448704.5:ENST00000470156.1:ENST00000457939.1:ENST00000420441.1:ENST00000478504.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	71	2	3.28107	3.333595	3.38612	0.00262488	0.00249604	0.0470772	0.0446195
chr20	47330858	47330958	7349253	0	-	0.45	(0.44,0.476]	chr20	749346	119	INTRON	INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000435836.5:ENST00000446894.5:ENST00000441977.1	protein_coding	protein_coding	protein_coding	protein_coding	11	270	2	3.00213	3.33359	3.66505	1.52664e-5	7.03841e-7	0.00313632	4.65333e-4
chr3	177103831	177103930	1871503	0	-	0.464646	(0.44,0.476]	chr3	187402	45	INTRON	INTRON	TBL1XR1	ENSG00000177565.18	ENST00000457928.7:ENST00000430069.5:ENST00000673974.1:ENST00000352800.10:ENST00000422442.6:ENST00000428970.5:ENST00000424913.5:ENST00000437738.5:ENST00000431421.5:ENST00000635794.1:ENST00000630796.2:ENST00000450267.5:ENST00000630833.2:ENST00000431674.5:ENST00000422066.5:ENST00000443315.5:ENST00000627825.2:ENST00000427349.5:ENST00000413084.5:ENST00000637137.1:ENST00000491623.2:ENST00000637544.1:ENST00000636478.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	45	2	1.98146	3.3335500000000002	4.68564	0.0186013	0.00816201	0.117264	0.0766625
chr5	131381444	131381544	2485815	0	+	0.51	(0.476,0.515]	chr5	237134	215	INTRON	INTRON	CDC42SE2	ENSG00000158985.14	ENST00000395246.5:ENST00000505065.2:ENST00000503291.5:ENST00000360515.7	protein_coding	protein_coding	protein_coding	protein_coding	2	40	2	2.05154	3.333365	4.61519	0.0336015	0.00528365	0.134145	0.0656295
chr17	62054997	62055097	6810778	0	-	0.41	(0.408,0.44]	chr17	672952	19	INTRON	INTRON	MED13	ENSG00000108510.10	ENST00000397786.7	protein_coding	protein_coding	protein_coding	protein_coding	2	38	2	2.33431	3.3333449999999996	4.33238	0.0218901	0.0129219	0.11491	0.0990564
chr3	185918938	185919037	1886402	0	-	0.373737	(0.35,0.378]	chr3	188606	1	SS5_PROX	SS5_PROX:INTRON	TRA2B	ENSG00000136527.19	ENST00000453386.7:ENST00000492417.5:ENST00000463328.5:ENST00000259043.11:ENST00000414862.5:ENST00000487615.5:ENST00000466832.5:ENST00000456380.5:ENST00000382191.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	224	2	3.13455	3.33323	3.53191	6.88024e-5	2.43443e-6	0.0073657	9.90432e-4
chr22	16612293	16612393	7473464	0	+	0.62	(0.57,1]	chr22	761977	4	SS5_PROX	SS5_PROX:INTRON	TPTEP1:ENSG00000283633	ENSG00000100181.22:ENSG00000283633.1	ENST00000558085.6:ENST00000400593.6:ENST00000592918.5:ENST00000592107.5:ENST00000426585.5:ENST00000591299.1	lncRNA	lncRNA	lncRNA:transcribed_unprocessed_pseudogene	lncRNA:processed_transcript	2	34	2	3.183	3.333185	3.48337	0.00254356	6.20854e-4	0.0448135	0.0223951
chr10	50444849	50444949	4618895	0	-	0.33	(0.32,0.35]	chr10	425432	109	INTRON	INTRON	SGMS1	ENSG00000198964.14	ENST00000429490.5:ENST00000361781.7:ENST00000619438.4:ENST00000609445.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	49	2	1.83315	3.33301	4.83287	0.0313348	0.0095071	0.144381	0.0817766
chr2	32360771	32360871	730815	0	+	0.34	(0.32,0.35]	chr2	84274	29	INTRON	INTRON	BIRC6	ENSG00000115760.15	ENST00000421745.7:ENST00000648282.1	protein_coding	protein_coding	protein_coding	protein_coding	3	49	2	1.83315	3.33301	4.83287	0.0313348	0.0095071	0.144381	0.0817766
chr7	131473358	131473457	3417920	0	+	0.292929	(0.28,0.32]	chr7	319284	12	INTRON	INTRON	MKLN1	ENSG00000128585.18	ENST00000421797.6:ENST00000352689.11:ENST00000494785.5:ENST00000458153.5:ENST00000498778.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	229	2	3.32738	3.332925	3.33847	1.0753e-4	1.58435e-5	0.00929593	0.00300937
chr3	152374188	152374288	1536043	0	+	0.2	[0,0.28]	chr3	160003	386	INTRON	INTRON	MBNL1	ENSG00000152601.18	ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000495875.6:ENST00000324210.10:ENST00000493459.5:ENST00000459747.1:ENST00000460591.5:ENST00000545754.5:ENST00000357472.7:ENST00000324196.9:ENST00000498502.5:ENST00000463374.5:ENST00000485910.5:ENST00000465907.6:ENST00000492948.5:ENST00000485509.5:ENST00000464596.5	protein_coding	protein_coding	protein_coding	protein_coding	2	46	2	1.84147	3.3329	4.82433	0.0610416	0.0200334	0.193277	0.109608
chr4	139326874	139326974	2049945	0	+	0.27	[0,0.28]	chr4	203286	243	INTRON	INTRON	NAA15	ENSG00000164134.13	ENST00000296543.10:ENST00000398947.1:ENST00000482087.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	46	2	1.84147	3.3329	4.82433	0.0610416	0.0200334	0.193277	0.109608
chrX	132025657	132025757	7722979	0	+	0.28	[0,0.28]	chrX	790023	16	INTRON	INTRON	STK26	ENSG00000134602.16	ENST00000354719.10:ENST00000394334.7:ENST00000481105.5:ENST00000394335.6:ENST00000496850.1	protein_coding	protein_coding	protein_coding	protein_coding	2	46	2	1.84147	3.3329	4.82433	0.0610416	0.0200334	0.193277	0.109608
chr7	87852223	87852322	3566131	0	-	0.353535	(0.35,0.378]	chr7	332310	19	INTRON	INTRON	SLC25A40	ENSG00000075303.13	ENST00000341119.10:ENST00000429674.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	88	2	3.11823	3.332535	3.54684	0.00119142	5.25625e-4	0.0315806	0.0206013
chrX	71550521	71550621	7680123	0	+	0.43	(0.408,0.44]	chrX	786405	21	INTRON	INTRON	OGT	ENSG00000147162.14	ENST00000373719.8:ENST00000488174.5:ENST00000373701.7:ENST00000455587.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	112	2	2.75945	3.33246	3.90547	2.60318e-4	2.03612e-4	0.014326	0.0129859
chr1	21732463	21732563	396348	0	-	0.21	[0,0.28]	chr1	47294	4	SS5_PROX	SS5_PROX:INTRON	USP48	ENSG00000090686.16	ENST00000400301.5:ENST00000308271.14:ENST00000529637.5:ENST00000526044.5:ENST00000534705.5:ENST00000421625.6:ENST00000374730.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	73	2	1.50357	3.332435	5.1613	0.0436989	0.00866441	0.162255	0.0787025
chr1	21863699	21863799	397374	0	-	0.53	(0.515,0.57]	chr1	47605	2	SS5_PROX	SS5_PROX:INTRON	HSPG2	ENSG00000142798.20	ENST00000374695.8	protein_coding	protein_coding	protein_coding	protein_coding	1	25	2	2.46104	3.3324249999999997	4.20381	0.032841	0.0189208	0.145164	0.108861
chr1	31047626	31047726	412715	0	-	0.52	(0.515,0.57]	chr1	49733	184	INTRON	INTRON	PUM1	ENSG00000134644.16	ENST00000426105.7:ENST00000373747.7:ENST00000257075.9:ENST00000424085.6:ENST00000525843.5:ENST00000440538.6:ENST00000373741.8:ENST00000373742.6:ENST00000526215.5:ENST00000525948.5:ENST00000480602.1:ENST00000524516.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	25	2	2.46104	3.3324249999999997	4.20381	0.032841	0.0189208	0.145164	0.108861
chr1	202767418	202767489	620332	0	-	0.56338	(0.515,0.57]	chr1	73641	1	SS3_PROX	SS3_PROX:INTRON	KDM5B	ENSG00000117139.18	ENST00000367265.9:ENST00000648338.1:ENST00000649542.1:ENST00000647757.1:ENST00000367264.7:ENST00000648473.1:ENST00000650569.1:ENST00000648056.1:ENST00000649770.1:ENST00000648469.1:ENST00000650417.1:ENST00000235790.9:ENST00000650422.1:ENST00000648738.1:ENST00000648958.1:ENST00000602511.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	25	2	2.46104	3.3324249999999997	4.20381	0.032841	0.0189208	0.145164	0.108861
chr11	5302544	5302644	4896234	0	-	0.55	(0.515,0.57]	chr11	459146	7	INTRON	INTRON	HBG2:ENSG00000239920:HBE1	ENSG00000196565.15:ENSG00000239920.2:ENSG00000213931.7	ENST00000380252.6:ENST00000380259.7:ENST00000646569.1:ENST00000643199.1:ENST00000292896.3:ENST00000380237.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	25	2	2.46104	3.3324249999999997	4.20381	0.032841	0.0189208	0.145164	0.108861
chr14	30964608	30964708	5857255	0	-	0.54	(0.515,0.57]	chr14	556508	2	INTRON	INTRON	STRN3	ENSG00000196792.12	ENST00000355683.9:ENST00000357479.10:ENST00000555358.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	25	2	2.46104	3.3324249999999997	4.20381	0.032841	0.0189208	0.145164	0.108861
chr15	90273802	90273897	6098497	0	+	0.515789	(0.515,0.57]	chr15	580511	7	INTRON	INTRON	NGRN	ENSG00000182768.9	ENST00000411845.3	protein_coding	protein_coding	protein_coding	protein_coding	1	25	2	2.46104	3.3324249999999997	4.20381	0.032841	0.0189208	0.145164	0.108861
chr16	23911643	23911743	6324517	0	+	0.56	(0.515,0.57]	chr16	605701	179	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000498739.1	protein_coding	protein_coding	protein_coding	protein_coding	1	25	2	2.46104	3.3324249999999997	4.20381	0.032841	0.0189208	0.145164	0.108861
chr18	26050128	26050228	6959315	0	-	0.57	(0.515,0.57]	chr18	688437	103	INTRON	INTRON	SS18	ENSG00000141380.14	ENST00000415083.7:ENST00000542420.6:ENST00000579640.5:ENST00000269138.9:ENST00000269137.11:ENST00000585121.5:ENST00000539244.6:ENST00000585241.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	25	2	2.46104	3.3324249999999997	4.20381	0.032841	0.0189208	0.145164	0.108861
chr2	55360923	55361021	1123793	0	-	0.530612	(0.515,0.57]	chr2	120531	43	INTRON	INTRON	CCDC88A	ENSG00000115355.18	ENST00000263630.13:ENST00000436346.7:ENST00000336838.10:ENST00000642200.1:ENST00000413716.7:ENST00000643413.1:ENST00000647401.1:ENST00000643265.1:ENST00000645311.1:ENST00000646796.1:ENST00000645571.1:ENST00000645477.1:ENST00000645072.1:ENST00000644890.1:ENST00000644630.1:ENST00000647098.1:ENST00000646324.1:ENST00000642890.1:ENST00000647517.1:ENST00000645031.1:ENST00000645484.1:ENST00000645529.1:ENST00000644033.1:ENST00000644193.1:ENST00000647383.1:ENST00000645168.1:ENST00000647341.1:ENST00000644332.1:ENST00000430086.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	25	2	2.46104	3.3324249999999997	4.20381	0.032841	0.0189208	0.145164	0.108861
chr4	2552547	2552647	1912675	0	+	0.53	(0.515,0.57]	chr4	191976	150	INTRON	INTRON	RNF4:FAM193A	ENSG00000063978.16:ENSG00000125386.16	ENST00000508235.1:ENST00000637812.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	25	2	2.46104	3.3324249999999997	4.20381	0.032841	0.0189208	0.145164	0.108861
chr8	26343449	26343549	3716621	0	+	0.54	(0.515,0.57]	chr8	345395	31	INTRON	INTRON	PPP2R2A	ENSG00000221914.11	ENST00000380737.8:ENST00000520329.5:ENST00000518254.5:ENST00000524169.5:ENST00000518397.5:ENST00000522535.5:ENST00000665949.1:ENST00000521095.5:ENST00000660435.1:ENST00000523925.5:ENST00000524099.5:ENST00000315985.7:ENST00000519636.5:ENST00000522482.5:ENST00000521557.5:ENST00000519439.5:ENST00000521484.5:ENST00000523964.5:ENST00000667651.1:ENST00000657943.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	25	2	2.46104	3.3324249999999997	4.20381	0.032841	0.0189208	0.145164	0.108861
chr8	143461216	143461316	4082236	0	-	0.53	(0.515,0.57]	chr8	370865	197	INTRON	INTRON	ZC3H3	ENSG00000014164.7	ENST00000262577.6	protein_coding	protein_coding	protein_coding	protein_coding	1	25	2	2.46104	3.3324249999999997	4.20381	0.032841	0.0189208	0.145164	0.108861
chr17	62054300	62054400	6810771	0	-	0.23	[0,0.28]	chr17	672952	12	INTRON	INTRON	MED13	ENSG00000108510.10	ENST00000397786.7	protein_coding	protein_coding	protein_coding	protein_coding	3	57	2	1.84046	3.332395	4.82433	0.0335889	0.0200334	0.146709	0.109608
chr2	15428792	15428892	1071822	0	-	0.48	(0.476,0.515]	chr2	114368	6	INTRON	INTRON	NBAS	ENSG00000151779.13	ENST00000281513.10	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	2.13854	3.33227	4.526	0.0776563	0.00699701	0.196285	0.0754576
chr4	119531283	119531383	2027129	0	+	0.49	(0.476,0.515]	chr4	201634	21	INTRON	INTRON	SEPTIN7P14	ENSG00000245958.7	ENST00000688315.1:ENST00000692945.1:ENST00000685974.1:ENST00000692409.1:ENST00000498873.5:ENST00000500559.6	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	1	29	2	2.13854	3.33227	4.526	0.0776563	0.00699701	0.196285	0.0754576
chr5	177030930	177031030	2553013	0	+	0.49	(0.476,0.515]	chr5	243771	73	INTRON	INTRON	ZNF346	ENSG00000113761.12	ENST00000512315.5:ENST00000358149.8:ENST00000506693.5:ENST00000503425.5:ENST00000508155.5:ENST00000511834.5:ENST00000503039.1:ENST00000513587.5:ENST00000510933.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	29	2	2.13854	3.33227	4.526	0.0776563	0.00699701	0.196285	0.0754576
chr6	17952228	17952328	3068199	0	-	0.48	(0.476,0.515]	chr6	285105	4	INTRON	INTRON	KIF13A	ENSG00000137177.20	ENST00000378814.9:ENST00000259711.11:ENST00000378826.6:ENST00000378843.6:ENST00000636847.1:ENST00000507576.1:ENST00000505588.1:ENST00000502704.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	29	2	2.13854	3.33227	4.526	0.0776563	0.00699701	0.196285	0.0754576
chr6	110989861	110989960	2939380	0	+	0.50505	(0.476,0.515]	chr6	276852	4	INTRON	INTRON	RPF2	ENSG00000197498.13	ENST00000368864.8:ENST00000441448.7:ENST00000607388.1:ENST00000425871.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	29	2	2.13854	3.33227	4.526	0.0776563	0.00699701	0.196285	0.0754576
chr6	138409116	138409215	2966990	0	+	0.494949	(0.476,0.515]	chr6	278923	26	INTRON	INTRON	HEBP2	ENSG00000051620.11	ENST00000448741.5:ENST00000607197.6:ENST00000367697.7:ENST00000453452.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	29	2	2.13854	3.33227	4.526	0.0776563	0.00699701	0.196285	0.0754576
chr6	158783319	158783419	3252970	0	-	0.48	(0.476,0.515]	chr6	302347	4	SS5_PROX	SS5_PROX:INTRON	EZR	ENSG00000092820.19	ENST00000337147.11:ENST00000367075.4	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	2.13854	3.33227	4.526	0.0776563	0.00699701	0.196285	0.0754576
chr9	91803002	91803102	4283792	0	-	0.5	(0.476,0.515]	chr9	393909	268	INTRON	INTRON	ROR2	ENSG00000169071.15	ENST00000375715.5:ENST00000375708.4:ENST00000550066.5:ENST00000495386.5:ENST00000546883.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	29	2	2.13854	3.33227	4.526	0.0776563	0.00699701	0.196285	0.0754576
chr10	102270313	102270413	4512891	0	+	0.54	(0.515,0.57]	chr10	415698	98	INTRON	INTRON	GBF1	ENSG00000107862.7	ENST00000676513.1:ENST00000676939.1:ENST00000677439.1:ENST00000677240.1:ENST00000677618.1:ENST00000679155.1:ENST00000679280.1:ENST00000678036.1:ENST00000678476.1:ENST00000678504.1:ENST00000677247.1:ENST00000677655.1:ENST00000678351.1:ENST00000679238.1:ENST00000677487.1:ENST00000677506.1:ENST00000678666.1:ENST00000676560.1:ENST00000673650.1:ENST00000674034.1:ENST00000369983.5:ENST00000679003.1:ENST00000678486.1:ENST00000676682.1:ENST00000676807.1:ENST00000676993.1:ENST00000678575.1:ENST00000677522.1:ENST00000678293.1:ENST00000679087.1:ENST00000677683.1:ENST00000676861.1:ENST00000677491.1:ENST00000677461.1:ENST00000677871.1:ENST00000677431.1:ENST00000678222.1:ENST00000678826.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	25	2	2.35125	3.332255	4.31326	0.0436431	0.0141817	0.162255	0.0959618
chr15	74682314	74682413	6222186	0	-	0.525253	(0.515,0.57]	chr15	594093	20	INTRON	INTRON	EDC3	ENSG00000179151.13	ENST00000315127.9:ENST00000647659.1:ENST00000565602.5:ENST00000426797.7:ENST00000568176.5:ENST00000566219.1:ENST00000563009.5:ENST00000569561.5:ENST00000566243.5:ENST00000566828.5:ENST00000570138.5:ENST00000563292.1:ENST00000569007.1:ENST00000567813.1:ENST00000566119.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	25	2	2.35125	3.332255	4.31326	0.0436431	0.0141817	0.162255	0.0959618
chr16	1848950	1849050	6430116	0	-	0.54	(0.515,0.57]	chr16	618357	36	INTRON	INTRON	MEIOB	ENSG00000162039.17	ENST00000325962.9:ENST00000470044.5:ENST00000397344.7:ENST00000496541.6	protein_coding	protein_coding	protein_coding	protein_coding	1	25	2	2.35125	3.332255	4.31326	0.0436431	0.0141817	0.162255	0.0959618
chr16	2545410	2545510	6278935	0	+	0.53	(0.515,0.57]	chr16	600618	60	INTRON	INTRON	PDPK1	ENSG00000140992.19	ENST00000566659.1:ENST00000441549.7:ENST00000268673.11:ENST00000474706.6:ENST00000342085.9:ENST00000570136.5:ENST00000492021.6:ENST00000389224.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	25	2	2.35125	3.332255	4.31326	0.0436431	0.0141817	0.162255	0.0959618
chr17	60353203	60353303	6805486	0	-	0.52	(0.515,0.57]	chr17	672366	72	INTRON	INTRON	USP32	ENSG00000170832.13	ENST00000300896.9:ENST00000590133.5:ENST00000589335.5:ENST00000393003.7:ENST00000588898.1:ENST00000589761.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	25	2	2.35125	3.332255	4.31326	0.0436431	0.0141817	0.162255	0.0959618
chr17	78171145	78171236	6681917	0	+	0.549451	(0.515,0.57]	chr17	652674	2	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SYNGR2	ENSG00000108639.8	ENST00000225777.8:ENST00000585591.5:ENST00000589183.1:ENST00000589711.1:ENST00000591770.1:ENST00000588282.5:ENST00000589168.1:ENST00000590201.1:ENST00000592456.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	25	2	2.35125	3.332255	4.31326	0.0436431	0.0141817	0.162255	0.0959618
chr20	3905360	3905459	7227057	0	+	0.565657	(0.515,0.57]	chr20	734484	34	INTRON	INTRON	PANK2	ENSG00000125779.24	ENST00000497424.5:ENST00000316562.9:ENST00000495692.5:ENST00000610179.7:ENST00000643504.2:ENST00000336066.8:ENST00000646394.1:ENST00000621507.1:ENST00000471830.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	25	2	2.35125	3.332255	4.31326	0.0436431	0.0141817	0.162255	0.0959618
chr21	44052576	44052676	7415437	0	+	0.56	(0.515,0.57]	chr21	755800	1	SS5_PROX	SS5_PROX:INTRON	TRAPPC10	ENSG00000160218.13	ENST00000291574.9:ENST00000380221.7:ENST00000422875.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	25	2	2.35125	3.332255	4.31326	0.0436431	0.0141817	0.162255	0.0959618
chr5	131351057	131351157	2485508	0	+	0.52	(0.515,0.57]	chr5	237120	346	INTRON	INTRON	CDC42SE2	ENSG00000158985.14	ENST00000502840.5:ENST00000511432.5:ENST00000506419.5:ENST00000395246.5:ENST00000505065.2:ENST00000504701.5:ENST00000503291.5:ENST00000360515.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	25	2	2.35125	3.332255	4.31326	0.0436431	0.0141817	0.162255	0.0959618
chr6	32118606	32118674	3081406	0	-	0.529412	(0.515,0.57]	chr6	287822	2	SS5_PROX	SS5_PROX:INTRON	ATF6B	ENSG00000213676.13	ENST00000375201.8:ENST00000375203.8:ENST00000453203.2	protein_coding	protein_coding	protein_coding	protein_coding	1	25	2	2.35125	3.332255	4.31326	0.0436431	0.0141817	0.162255	0.0959618
chr3	121542662	121542760	1798430	0	-	0.418367	(0.408,0.44]	chr3	180585	8	INTRON	INTRON	POLQ	ENSG00000051341.15	ENST00000264233.6	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	2.43988	3.3321750000000003	4.22447	0.0398236	0.0161655	0.143072	0.109464
chr3	158247468	158247568	1539657	0	+	0.44	(0.408,0.44]	chr3	160296	158	INTRON	INTRON	RSRC1	ENSG00000174891.14	ENST00000480820.5:ENST00000295930.7:ENST00000471994.5:ENST00000683733.1:ENST00000682221.1:ENST00000683831.1:ENST00000683516.1:ENST00000482822.3:ENST00000476899.6:ENST00000464171.5:ENST00000611884.5:ENST00000682164.1:ENST00000684604.1:ENST00000683899.1:ENST00000682500.1:ENST00000684683.1:ENST00000312179.10:ENST00000475278.6:ENST00000480119.5:ENST00000471911.5:ENST00000683137.1:ENST00000477788.5:ENST00000496268.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	30	2	2.43988	3.3321750000000003	4.22447	0.0398236	0.0161655	0.143072	0.109464
chr10	119158942	119159037	4705121	0	-	0.494737	(0.476,0.515]	chr10	434062	5	INTRON	INTRON	SFXN4	ENSG00000183605.17	ENST00000355697.7:ENST00000461438.5:ENST00000369131.8:ENST00000466218.5:ENST00000419372.5:ENST00000462913.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	29	2	2.23335	3.33214	4.43093	0.0634557	0.00931369	0.177047	0.0855292
chr12	57406089	57406189	5339009	0	-	0.49	(0.476,0.515]	chr12	510716	99	INTRON	INTRON	R3HDM2	ENSG00000179912.21	ENST00000402412.6:ENST00000347140.7:ENST00000634871.1:ENST00000448732.1	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	2.23335	3.33214	4.43093	0.0634557	0.00931369	0.177047	0.0855292
chr14	102981712	102981808	5971289	0	-	0.5	(0.476,0.515]	chr14	567551	3	INTRON	INTRON	CDC42BPB	ENSG00000198752.11	ENST00000361246.7	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	2.23335	3.33214	4.43093	0.0634557	0.00931369	0.177047	0.0855292
chr15	43768696	43768796	6012279	0	+	0.49	(0.476,0.515]	chr15	572676	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	PDIA3	ENSG00000167004.14	ENST00000687794.1:ENST00000686402.1:ENST00000686175.1:ENST00000687211.1:ENST00000685864.1:ENST00000691274.1:ENST00000686314.1:ENST00000300289.10:ENST00000688851.1:ENST00000687167.1:ENST00000688652.1:ENST00000693281.1:ENST00000691893.1:ENST00000684793.1:ENST00000692341.1:ENST00000690274.1:ENST00000690371.1:ENST00000692484.1:ENST00000689152.1:ENST00000687465.1:ENST00000434494.5:ENST00000686227.1:ENST00000497349.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	29	2	2.23335	3.33214	4.43093	0.0634557	0.00931369	0.177047	0.0855292
chr19	24050821	24050919	7044034	0	+	0.479592	(0.476,0.515]	chr19	702356	10	EXON_LNCRNA	EXON_LNCRNA:INTRON	ENSG00000268362:ZNF254	ENSG00000268362.6:ENSG00000213096.11	ENST00000664647.1:ENST00000613065.4:ENST00000656993.1:ENST00000666101.1:ENST00000653003.1:ENST00000666488.1:ENST00000594934.6:ENST00000654353.1:ENST00000662140.1:ENST00000668060.1:ENST00000660137.1:ENST00000669127.1:ENST00000652968.1:ENST00000670905.1:ENST00000658858.1:ENST00000654594.1:ENST00000654372.1:ENST00000652837.1:ENST00000654611.1:ENST00000597683.1:ENST00000671141.1:ENST00000653308.1:ENST00000659757.1:ENST00000661386.1:ENST00000668656.1:ENST00000663903.1:ENST00000668169.1:ENST00000663458.1:ENST00000662903.1:ENST00000665638.1:ENST00000670058.1:ENST00000668701.1:ENST00000655664.1:ENST00000666861.1:ENST00000664627.1:ENST00000661650.1:ENST00000667700.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	1	29	2	2.23335	3.33214	4.43093	0.0634557	0.00931369	0.177047	0.0855292
chr3	48441417	48441513	1421084	0	+	0.479167	(0.476,0.515]	chr3	149351	4	INTRON	INTRON	TMA7	ENSG00000232112.3	ENST00000438607.2:ENST00000477624.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	29	2	2.23335	3.33214	4.43093	0.0634557	0.00931369	0.177047	0.0855292
chr6	4021966	4022065	2789704	0	+	0.50505	(0.476,0.515]	chr6	263481	1	INTRON	INTRON	PRPF4B	ENSG00000112739.17	ENST00000480058.5:ENST00000337659.11	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	29	2	2.23335	3.33214	4.43093	0.0634557	0.00931369	0.177047	0.0855292
chr6	88755787	88755886	3157049	0	-	0.50505	(0.476,0.515]	chr6	294184	415	INTRON	INTRON	RNGTT	ENSG00000111880.16	ENST00000369485.9:ENST00000369475.7:ENST00000627296.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	29	2	2.23335	3.33214	4.43093	0.0634557	0.00931369	0.177047	0.0855292
chr7	148795214	148795314	3444673	0	+	0.48	(0.476,0.515]	chr7	321272	20	INTRON	INTRON	CUL1	ENSG00000055130.18	ENST00000409469.5:ENST00000662716.1:ENST00000665936.1:ENST00000663044.1:ENST00000602748.5:ENST00000663835.1:ENST00000655324.1:ENST00000662132.1:ENST00000325222.9:ENST00000656001.1:ENST00000666124.1:ENST00000671421.1:ENST00000671397.1:ENST00000662670.1:ENST00000660240.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	29	2	2.23335	3.33214	4.43093	0.0634557	0.00931369	0.177047	0.0855292
chr9	131488096	131488196	4217944	0	+	0.52	(0.515,0.57]	chr9	386868	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	PRRC2B	ENSG00000288701.1	ENST00000684596.1:ENST00000683519.1:ENST00000682501.1:ENST00000682662.1:ENST00000683161.1	protein_coding	protein_coding	protein_coding	protein_coding	8	172	2	3.10006	3.3321199999999997	3.56418	1.52873e-5	4.30909e-6	0.00313875	0.00139488
chr5	69117317	69117396	2379826	0	+	0.481013	(0.476,0.515]	chr5	229109	2	CDS	CDS:EXON_MRNA	SLC30A5	ENSG00000145740.20	ENST00000396591.8:ENST00000507354.5:ENST00000513937.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	61	2	2.99852	3.332085	3.66565	0.0077575	4.18031e-4	0.0757402	0.0182827
chr17	16302561	16302661	6561866	0	+	0.44	(0.408,0.44]	chr17	637756	22	INTRON	INTRON	PIGL	ENSG00000108474.17	ENST00000581006.5:ENST00000225609.10:ENST00000395844.8:ENST00000498772.6:ENST00000584797.5:ENST00000585034.5:ENST00000477745.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	40	2	1.88062	3.3320499999999997	4.78348	0.0534548	0.00290352	0.162935	0.0494641
chr10	68443880	68443970	4639482	0	-	0.455556	(0.44,0.476]	chr10	426692	4	INTRON	INTRON	DNA2	ENSG00000138346.15	ENST00000358410.8:ENST00000551118.6:ENST00000399179.6:ENST00000399180.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	109	2	3.32181	3.33195	3.34209	2.46145e-4	1.47653e-4	0.0144887	0.0105526
chr2	186506431	186506521	943030	0	+	0.322222	(0.32,0.35]	chr2	103287	2	SS3_PROX	SS3_PROX:INTRON	ZC3H15	ENSG00000065548.18	ENST00000337859.11:ENST00000498757.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	199	2	2.84076	3.331945	3.82313	0.0027933	4.1776e-7	0.0469265	3.37394e-4
chr16	23884783	23884883	6324248	0	+	0.5	(0.476,0.515]	chr16	605697	156	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000645517.1:ENST00000498739.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	82	2	3.32932	3.33174	3.33416	0.00230489	1.60666e-4	0.0428247	0.0109124
chr12	122523189	122523283	5442224	0	-	0.425532	(0.408,0.44]	chr12	520597	4	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	RSRC2	ENSG00000111011.18	ENST00000331738.12:ENST00000532695.5:ENST00000433877.6:ENST00000527173.6:ENST00000525335.6:ENST00000344591.8:ENST00000527399.3:ENST00000527796.6:ENST00000526560.6:ENST00000527461.5:ENST00000525387.5:ENST00000528279.1:ENST00000525570.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	37	2	2.14732	3.3316800000000004	4.51604	0.0237354	0.0137419	0.129075	0.0949306
chr7	107316641	107316741	3610546	0	-	0.43	(0.408,0.44]	chr7	336666	179	INTRON	INTRON	COG5	ENSG00000164597.15	ENST00000297135.9:ENST00000347053.8:ENST00000393603.7	protein_coding	protein_coding	protein_coding	protein_coding	2	37	2	2.14732	3.3316800000000004	4.51604	0.0237354	0.0137419	0.129075	0.0949306
chr7	97863967	97864064	3579308	0	-	0.340206	(0.32,0.35]	chr7	333284	10	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	ASNS:ENSG00000284707	ENSG00000070669.17:ENSG00000284707.2	ENST00000394308.8:ENST00000641784.1:ENST00000641390.1:ENST00000175506.8:ENST00000394309.7:ENST00000437628.5:ENST00000454046.5:ENST00000641315.1:ENST00000422745.5:ENST00000455086.5:ENST00000444334.5:ENST00000442734.5:ENST00000495255.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA	7	82	2	1.76568	3.33168	4.89768	0.00911113	0.00793135	0.0855292	0.076155
chrX	123632252	123632352	7878023	0	-	0.44	(0.408,0.44]	chrX	802476	4	SS3_PROX	SS3_PROX:INTRON	THOC2	ENSG00000125676.20	ENST00000245838.13:ENST00000355725.8:ENST00000491737.5	protein_coding	protein_coding	protein_coding	protein_coding	3	50	2	1.87977	3.331625	4.78348	0.0282738	0.00290352	0.125825	0.0494641
chr4	1322896	1322994	1909848	0	+	0.367347	(0.35,0.378]	chr4	191505	4	SS5_PROX	SS5_PROX:INTRON	MAEA	ENSG00000090316.16	ENST00000505177.6:ENST00000303400.9:ENST00000264750.10:ENST00000503653.5:ENST00000512308.5:ENST00000502558.5:ENST00000509254.5:ENST00000514708.5:ENST00000503693.1:ENST00000509531.5:ENST00000510794.5:ENST00000505839.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	70	2	1.21404	3.3316149999999998	5.44919	0.0632774	9.66659e-4	0.19754	0.0282401
chr16	2753845	2753945	6279828	0	+	0.43	(0.408,0.44]	chr16	600759	2	SS5_PROX	SS5_PROX:INTRON	SRRM2	ENSG00000167978.17	ENST00000576924.5:ENST00000301740.13:ENST00000575009.5:ENST00000576894.5:ENST00000575701.4:ENST00000630499.2:ENST00000576415.5:ENST00000571378.5:ENST00000574340.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	219	2	2.77478	3.3315849999999996	3.88839	1.03937e-4	6.26237e-7	0.00915599	4.30701e-4
chr1	70316964	70317064	480490	0	-	0.4	(0.378,0.408]	chr1	57758	10	INTRON	INTRON	ANKRD13C	ENSG00000118454.13	ENST00000370944.9:ENST00000262346.6:ENST00000498735.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	45	2	1.65821	3.3314000000000004	5.00459	0.0506302	0.00371142	0.17547	0.0535094
chr20	32788553	32788653	7256925	0	+	0.52	(0.515,0.57]	chr20	737152	3	SS3_PROX	SS3_PROX:INTRON	DNMT3B	ENSG00000088305.19	ENST00000696232.1:ENST00000328111.6:ENST00000696231.1:ENST00000348286.6:ENST00000353855.6:ENST00000696233.1:ENST00000443239.7:ENST00000696234.1:ENST00000696235.1:ENST00000456297.6:ENST00000696236.1:ENST00000201963.3:ENST00000696238.1:ENST00000696239.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	46	2	1.68552	3.3313699999999997	4.97722	0.0292028	0.00168681	0.141637	0.0370386
chr8	52692249	52692349	3950886	0	-	0.25	[0,0.28]	chr8	362390	49	INTRON	INTRON	RB1CC1	ENSG00000023287.13	ENST00000025008.10:ENST00000435644.6:ENST00000521611.1:ENST00000518710.5:ENST00000517963.1:ENST00000518211.1:ENST00000518468.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	79	2	1.31355	3.3312250000000003	5.3489	0.0613574	0.00514751	0.193423	0.062965
chr1	39571892	39571970	427745	0	-	0.397436	(0.378,0.408]	chr1	51945	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PABPC4	ENSG00000090621.15	ENST00000677006.1:ENST00000372858.8:ENST00000372856.7:ENST00000372857.7:ENST00000372862.7:ENST00000676523.1:ENST00000677548.1:ENST00000678980.1:ENST00000677244.1:ENST00000677609.1:ENST00000679246.1:ENST00000678287.1:ENST00000678625.1:ENST00000470443.6:ENST00000421687.6:ENST00000677644.1:ENST00000474378.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	64	2	3.22599	3.33122	3.43645	0.00288652	0.00171162	0.0494641	0.037419
chr6	97144037	97144136	3163354	0	-	0.40404	(0.378,0.408]	chr6	295025	20	UTR3	UTR3:EXON_MRNA	MMS22L	ENSG00000146263.12	ENST00000683635.1:ENST00000275053.8	protein_coding	protein_coding	protein_coding	protein_coding	2	64	2	3.22599	3.33122	3.43645	0.00288652	0.00171162	0.0494641	0.037419
chr2	176275208	176275308	925270	0	+	0.42	(0.408,0.44]	chr2	101669	44	INTRON	INTRON	MTX2	ENSG00000128654.14	ENST00000420864.5:ENST00000249442.11:ENST00000423461.6:ENST00000443241.5:ENST00000452865.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	51	2	1.70409	3.33113	4.95817	0.028108	0.00372419	0.137011	0.0535094
chr7	64795670	64795770	3320357	0	+	0.32	(0.28,0.32]	chr7	308703	7	INTRON	INTRON	ZNF138	ENSG00000197008.10	ENST00000359735.7:ENST00000440155.6:ENST00000494380.5:ENST00000307355.12:ENST00000437743.1:ENST00000440598.2:ENST00000430838.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	156	2	2.53463	3.331065	4.1275	6.24568e-4	1.40746e-4	0.0224805	0.0107933
chr15	64080303	64080402	6202668	0	-	0.545455	(0.515,0.57]	chr15	591577	44	INTRON	INTRON	CIAO2A	ENSG00000166797.11	ENST00000300030.8:ENST00000380290.7:ENST00000559705.1:ENST00000557835.5:ENST00000559950.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	28	2	2.76354	3.33105	3.89856	0.0280943	0.0147344	0.137011	0.0983813
chr19	50389596	50389695	7092730	0	+	0.535354	(0.515,0.57]	chr19	710763	14	INTRON	INTRON	POLD1	ENSG00000062822.16	ENST00000600859.5:ENST00000600746.2:ENST00000599857.7:ENST00000613923.6:ENST00000601098.6:ENST00000643407.1:ENST00000440232.7:ENST00000595904.6:ENST00000593887.2:ENST00000687454.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	28	2	2.76354	3.33105	3.89856	0.0280943	0.0147344	0.137011	0.0983813
chr3	100741955	100742055	1468270	0	+	0.31	(0.28,0.32]	chr3	153884	4	SS3_PROX	SS3_PROX:INTRON	TFG	ENSG00000114354.15	ENST00000675047.1:ENST00000490574.6:ENST00000675543.1:ENST00000676308.1:ENST00000675499.1:ENST00000674699.1:ENST00000418917.7:ENST00000675553.1:ENST00000620299.5:ENST00000675246.1:ENST00000675692.1:ENST00000676276.1:ENST00000676054.1:ENST00000675890.1:ENST00000675011.1:ENST00000675586.1:ENST00000674645.1:ENST00000675958.1:ENST00000674798.1:ENST00000676010.1:ENST00000675591.1:ENST00000675420.1:ENST00000674615.1:ENST00000676431.1:ENST00000674758.1:ENST00000240851.9:ENST00000675243.1:ENST00000676111.1:ENST00000476228.5:ENST00000463568.6:ENST00000676395.1:ENST00000487505.6:ENST00000615993.2:ENST00000676455.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	59	2	1.56118	3.330935	5.10069	0.0467152	0.00610574	0.1676	0.0676501
chr7	111212609	111212709	3620608	0	-	0.31	(0.28,0.32]	chr7	337093	2487	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	138	2	3.2053	3.330875	3.45645	7.42616e-4	1.23958e-4	0.0250442	0.00952291
chr12	10713016	10713113	5265901	0	-	0.226804	[0,0.28]	chr12	502107	24	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	YBX3	ENSG00000060138.13	ENST00000228251.9:ENST00000279550.11:ENST00000540447.5:ENST00000542002.5:ENST00000542641.5:ENST00000539204.5:ENST00000544622.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	34	2	2.36637	3.3308649999999997	4.29536	0.0590175	0.0500615	0.17488	0.167915
chr17	61908998	61909094	6809410	0	-	0.239583	[0,0.28]	chr17	672745	10	INTRON	INTRON	INTS2	ENSG00000108506.13	ENST00000251334.7:ENST00000617492.4:ENST00000444766.7:ENST00000646745.1:ENST00000647009.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	34	2	2.36637	3.3308649999999997	4.29536	0.0590175	0.0500615	0.17488	0.167915
chr4	67679902	67679999	2154253	0	-	0.278351	[0,0.28]	chr4	212182	10	INTRON	INTRON	UBA6	ENSG00000033178.13	ENST00000322244.10:ENST00000420827.2:ENST00000429659.7:ENST00000506571.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	34	2	2.36637	3.3308649999999997	4.29536	0.0590175	0.0500615	0.17488	0.167915
chr6	149667422	149667522	3246222	0	-	0.27	[0,0.28]	chr6	301614	48	INTRON	INTRON	LATS1	ENSG00000131023.13	ENST00000543571.6:ENST00000253339.9:ENST00000441107.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	34	2	2.36637	3.3308649999999997	4.29536	0.0590175	0.0500615	0.17488	0.167915
chr7	152281723	152281822	3679739	0	-	0.252525	[0,0.28]	chr7	341617	75	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000684262.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	34	2	2.36637	3.3308649999999997	4.29536	0.0590175	0.0500615	0.17488	0.167915
chr7	137987164	137987264	3655592	0	-	0.35	(0.32,0.35]	chr7	339370	534	INTRON	INTRON	CREB3L2	ENSG00000182158.16	ENST00000330387.11:ENST00000456390.5:ENST00000452463.5	protein_coding	protein_coding	protein_coding	protein_coding	2	45	2	1.94202	3.33086	4.7197	0.0486128	0.00568521	0.153946	0.0678837
chr2	28756571	28756671	724697	0	+	0.47	(0.44,0.476]	chr2	83720	40	INTRON	INTRON	PPP1CB	ENSG00000213639.10	ENST00000455580.5:ENST00000420282.5:ENST00000441461.5:ENST00000427786.1:ENST00000358506.6:ENST00000296122.10:ENST00000395366.3:ENST00000464273.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	98	2	2.53607	3.330845	4.12562	0.00255314	3.66727e-5	0.0449364	0.00484751
chr20	34883888	34883987	7261058	0	+	0.383838	(0.378,0.408]	chr20	737645	5	INTRON	INTRON	ACSS2	ENSG00000131069.20	ENST00000481971.5:ENST00000488172.5:ENST00000497927.5:ENST00000481284.5:ENST00000475459.6:ENST00000484354.1:ENST00000480274.1:ENST00000477932.5:ENST00000473172.5:ENST00000493805.6:ENST00000480978.5:ENST00000360596.7:ENST00000467019.5:ENST00000253382.5:ENST00000476922.5:ENST00000464399.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	186	2	3.27729	3.330825	3.38436	7.71902e-5	5.66588e-6	0.00784644	0.00165711
chr22	27916724	27916822	7565846	0	-	0.489796	(0.476,0.515]	chr22	774139	20	INTRON	INTRON	PITPNB	ENSG00000180957.19	ENST00000335272.10:ENST00000320996.14:ENST00000634017.1:ENST00000415296.5:ENST00000436663.1:ENST00000460566.5:ENST00000471825.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	45	2	1.96833	3.330765	4.6932	0.0195007	0.00753088	0.119967	0.074841
chr2	235541534	235541634	1041812	0	+	0.5	(0.476,0.515]	chr2	111222	166	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1:ENST00000402604.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	30	2	2.56033	3.33073	4.10113	0.0287634	0.0226984	0.127066	0.124921
chr16	58598338	58598437	6496065	0	-	0.434343	(0.408,0.44]	chr16	628630	91	INTRON	INTRON	CNOT1	ENSG00000125107.19	ENST00000317147.10:ENST00000569240.5:ENST00000567188.5:ENST00000441024.6:ENST00000565605.5:ENST00000564557.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	61	2	3.15414	3.330725	3.50731	0.00469847	8.5918e-4	0.0600108	0.0265787
chr2	70240848	70240947	1152391	0	-	0.414141	(0.408,0.44]	chr2	123109	43	INTRON	INTRON	C2orf42:TIA1	ENSG00000115998.8:ENSG00000116001.17	ENST00000470096.1:ENST00000415783.6:ENST00000433529.7:ENST00000282574.8:ENST00000445587.5:ENST00000416149.6:ENST00000474809.6:ENST00000477044.6:ENST00000496452.5:ENST00000481650.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	61	2	3.20034	3.33069	3.46104	0.00398025	0.00105552	0.0549214	0.0299229
chr1	150380614	150380714	221861	0	+	0.48	(0.476,0.515]	chr1	25051	153	INTRON	INTRON	RPRD2	ENSG00000163125.16	ENST00000492220.1:ENST00000369068.5:ENST00000401000.8:ENST00000369067.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	81	2	2.80651	3.33068	3.85485	0.00250121	1.63076e-4	0.0446195	0.0109774
chr2	231459751	231459851	1341772	0	-	0.55	(0.515,0.57]	chr2	140516	2	SS5_PROX	SS5_PROX:INTRON	NCL	ENSG00000115053.17	ENST00000322723.9:ENST00000676514.1:ENST00000677703.1:ENST00000678828.1:ENST00000676798.1:ENST00000678246.1:ENST00000679348.1:ENST00000417652.6:ENST00000453992.6:ENST00000678729.1:ENST00000678849.1:ENST00000678405.1:ENST00000676913.1:ENST00000678131.1:ENST00000678364.1:ENST00000676690.1:ENST00000461347.5:ENST00000356936.6:ENST00000454824.6:ENST00000436894.2:ENST00000677786.1:ENST00000494618.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	59	2	2.74772	3.330575	3.91343	0.0142192	1.28574e-4	0.103638	0.0103138
chr5	179719958	179720047	2560915	0	+	0.449438	(0.44,0.476]	chr5	244934	3	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CANX	ENSG00000127022.16	ENST00000681674.1:ENST00000681712.1:ENST00000681903.1:ENST00000680406.1:ENST00000502296.6:ENST00000504734.5:ENST00000452673.6:ENST00000679719.1:ENST00000679523.1:ENST00000679395.1:ENST00000681504.1:ENST00000679642.1:ENST00000681894.1:ENST00000680504.1:ENST00000681265.1:ENST00000680894.1:ENST00000680812.1:ENST00000680614.1:ENST00000680985.1:ENST00000680837.1:ENST00000680827.1:ENST00000681576.1:ENST00000680984.1:ENST00000680042.1:ENST00000681762.1:ENST00000681476.1:ENST00000681072.1:ENST00000247461.9:ENST00000513246.6:ENST00000680618.1:ENST00000502673.6:ENST00000680092.1:ENST00000506654.6:ENST00000514032.5:ENST00000681733.1:ENST00000679471.1:ENST00000679527.1:ENST00000680006.1:ENST00000681398.1:ENST00000681431.1:ENST00000680013.1:ENST00000681076.1:ENST00000681168.1:ENST00000509563.2:ENST00000681342.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	86	2	3.07862	3.33046	3.5823	0.0060153	3.73617e-5	0.0674604	0.00489903
chr11	105344981	105345081	5028670	0	-	0.37	(0.35,0.378]	chr11	474017	763	INTRON	INTRON	CARD18	ENSG00000255501.3	ENST00000649856.1:ENST00000528811.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	32	2	2.47065	3.330435	4.19022	0.0386172	0.0209891	0.142656	0.122348
chr18	36032828	36032922	6963195	0	-	0.37234	(0.35,0.378]	chr18	689063	14	INTRON	INTRON	RPRD1A	ENSG00000141425.18	ENST00000399022.9:ENST00000590898.5:ENST00000357384.8:ENST00000588737.5:ENST00000589050.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay	1	32	2	2.47065	3.330435	4.19022	0.0386172	0.0209891	0.142656	0.122348
chr19	1372779	1372876	6994894	0	+	0.371134	(0.35,0.378]	chr19	693104	8	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	PWWP3A	ENSG00000160953.17	ENST00000591337.7:ENST00000591806.6:ENST00000652273.1:ENST00000415183.7:ENST00000587460.6:ENST00000627377.1:ENST00000586067.1:ENST00000591627.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	32	2	2.47065	3.330435	4.19022	0.0386172	0.0209891	0.142656	0.122348
chr16	10462322	10462422	6287051	0	+	0.32	(0.28,0.32]	chr16	602017	44	INTRON	INTRON	ATF7IP2	ENSG00000166669.14	ENST00000396559.5:ENST00000396560.6:ENST00000543967.5:ENST00000562102.6:ENST00000535850.5:ENST00000568027.5:ENST00000324570.9:ENST00000356427.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	76	2	3.04485	3.330425	3.616	0.00894006	7.42427e-4	0.0799922	0.024913
chr7	87877369	87877460	3346681	0	+	0.296703	(0.28,0.32]	chr7	311839	2	INTRON	INTRON	DBF4	ENSG00000006634.8	ENST00000413643.5:ENST00000495067.1:ENST00000265728.6:ENST00000431138.5:ENST00000486925.1:ENST00000430279.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	76	2	3.04485	3.330425	3.616	0.00894006	7.42427e-4	0.0799922	0.024913
chr1	31061566	31061666	412858	0	-	0.29	(0.28,0.32]	chr1	49750	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	PUM1	ENSG00000134644.16	ENST00000426105.7:ENST00000373747.7:ENST00000257075.9:ENST00000424085.6:ENST00000525843.5:ENST00000440538.6:ENST00000373741.8:ENST00000373742.6:ENST00000526215.5:ENST00000525948.5:ENST00000480602.1:ENST00000524516.1:ENST00000531867.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	49	2	2.05458	3.3303399999999996	4.6061	0.0381508	0.0102724	0.141764	0.089002
chr15	67074993	67075093	6051939	0	+	0.31	(0.28,0.32]	chr15	576256	67	INTRON	INTRON	SMAD3	ENSG00000166949.17	ENST00000559460.5:ENST00000327367.9:ENST00000679624.1	protein_coding	protein_coding	protein_coding	protein_coding	2	76	2	3.2685	3.33027	3.39204	0.00432734	0.00188405	0.0579331	0.0402736
chr10	69192065	69192165	4445192	0	+	0.37	(0.35,0.378]	chr10	410109	4	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	SUPV3L1	ENSG00000156502.14	ENST00000359655.9:ENST00000471069.5:ENST00000483572.5:ENST00000422378.1:ENST00000478227.5:ENST00000486661.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	66	2	3.2953	3.3302199999999997	3.36514	0.0031465	0.00173699	0.0500431	0.03851
chrX	154797057	154797157	7915527	0	-	0.33	(0.32,0.35]	chrX	806172	44	INTRON	INTRON	MPP1	ENSG00000130830.15	ENST00000369534.8:ENST00000413259.7:ENST00000439370.5:ENST00000393531.5:ENST00000453245.5:ENST00000494170.1:ENST00000462825.5:ENST00000393529.5:ENST00000475943.5:ENST00000428488.1:ENST00000417435.5:ENST00000369531.1:ENST00000471821.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	195	2	3.10809	3.3301749999999997	3.55226	1.20457e-4	1.94752e-5	0.00992813	0.00339614
chr1	235128194	235128294	661833	0	-	0.37	(0.35,0.378]	chr1	78342	2	SS5_PROX	SS5_PROX:INTRON	TOMM20	ENSG00000173726.11	ENST00000366607.5	protein_coding	protein_coding	protein_coding	protein_coding	18	462	2	2.89288	3.3299399999999997	3.767	3.02398e-6	3.08046e-7	0.00111819	3.03587e-4
chr10	67885599	67885699	4440408	0	+	0.33	(0.32,0.35]	chr10	409421	2	SS5_PROX	SS5_PROX:INTRON	SIRT1	ENSG00000096717.12	ENST00000212015.11:ENST00000432464.5:ENST00000497639.5:ENST00000473922.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	129	2	2.5542	3.32986	4.10552	9.3945e-4	1.19038e-4	0.0280187	0.0098845100000000009
chr16	67072780	67072880	6365984	0	+	0.5	(0.476,0.515]	chr16	611429	56	INTRON	INTRON	CBFB	ENSG00000067955.15	ENST00000651988.1:ENST00000652360.1:ENST00000561924.6:ENST00000290858.11:ENST00000412916.7:ENST00000564034.6:ENST00000650873.1:ENST00000563939.3:ENST00000565389.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	81	2	2.84068	3.32981	3.81894	0.00217133	1.96038e-4	0.0417893	0.0122528
chr3	143031988	143032086	1529402	0	+	0.387755	(0.378,0.408]	chr3	159412	30	INTRON	INTRON	U2SURP	ENSG00000163714.18	ENST00000488497.7:ENST00000473835.7:ENST00000493598.6:ENST00000463563.6:ENST00000480029.5:ENST00000472373.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	226	2	2.90703	3.32971	3.75239	2.53024e-5	4.90903e-6	0.00394111	0.00163836
chr21	43921912	43922012	7414360	0	+	0.53	(0.515,0.57]	chr21	755702	51	INTRON	INTRON	AGPAT3	ENSG00000160216.21	ENST00000291572.13:ENST00000448287.5:ENST00000398061.5:ENST00000327505.6:ENST00000445582.5	protein_coding	protein_coding	protein_coding	protein_coding	2	39	2	2.48902	3.329695	4.17037	0.0139194	0.00760558	0.10247	0.0749571
chr1	65536798	65536898	138353	0	+	0.38	(0.378,0.408]	chr1	15499	106	INTRON	INTRON	LEPR	ENSG00000116678.20	ENST00000371060.7:ENST00000371059.7:ENST00000349533.11:ENST00000616738.4:ENST00000344610.12:ENST00000462765.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	63	2	3.05502	3.329655	3.60429	0.00689519	5.71664e-4	0.0717484	0.0217398
chr6	160029855	160029955	3023581	0	+	0.39	(0.378,0.408]	chr6	282048	2	SS5_PROX	SS5_PROX:INTRON	IGF2R	ENSG00000197081.16	ENST00000676781.1:ENST00000677704.1:ENST00000356956.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	63	2	3.05502	3.329655	3.60429	0.00689519	5.71664e-4	0.0717484	0.0217398
chr3	47727126	47727225	1684524	0	-	0.535354	(0.515,0.57]	chr3	172088	60	INTRON	INTRON	SMARCC1	ENSG00000173473.11	ENST00000254480.10:ENST00000425518.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	70	2	2.92115	3.3296200000000002	3.73809	0.00110258	3.11298e-4	0.03038	0.0162055
chrX	114029769	114029869	7868338	0	-	0.53	(0.515,0.57]	chrX	801551	379	INTRON	INTRON	XACT	ENSG00000241743.4	ENST00000468762.3:ENST00000649506.1	lncRNA	lncRNA	lncRNA	lncRNA	3	70	2	2.92115	3.3296200000000002	3.73809	0.00110258	3.11298e-4	0.03038	0.0162055
chr9	124860082	124860182	4349241	0	-	0.6	(0.57,1]	chr9	399278	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	RPL35	ENSG00000136942.15	ENST00000373570.8:ENST00000348462.6:ENST00000487431.1:ENST00000493018.5:ENST00000629845.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	60	2	3.01672	3.32951	3.6423	5.94133e-4	1.26117e-5	0.0221865	0.00281675
chr1	92725512	92725612	507572	0	-	0.47	(0.44,0.476]	chr1	59878	204	INTRON	INTRON	EVI5	ENSG00000067208.16	ENST00000370331.5:ENST00000540033.2:ENST00000684568.2:ENST00000474806.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	44	2	1.69402	3.329465	4.96491	0.0456129	0.0034249	0.164236	0.0517761
chr17	46087429	46087529	6783807	0	-	0.39	(0.378,0.408]	chr17	669199	45	INTRON	INTRON	KANSL1	ENSG00000120071.15	ENST00000574590.6:ENST00000572904.6:ENST00000432791.7:ENST00000575318.6:ENST00000638275.1:ENST00000262419.10:ENST00000648792.1:ENST00000639531.1:ENST00000639150.1:ENST00000639853.1:ENST00000571698.2:ENST00000639375.1:ENST00000577114.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	63	2	3.27922	3.32946	3.3797	0.00312717	0.00154501	0.0499153	0.0362716
chr18	1315720	1315820	6941336	0	-	0.4	(0.378,0.408]	chr18	686577	116	INTRON	INTRON	LINC00470	ENSG00000132204.14	ENST00000657423.1:ENST00000657618.1:ENST00000584090.5:ENST00000660947.1:ENST00000669242.1:ENST00000660475.1:ENST00000653775.1:ENST00000661931.1:ENST00000412816.7:ENST00000577867.5:ENST00000584492.5:ENST00000667416.1:ENST00000661852.1:ENST00000657919.1:ENST00000661646.1:ENST00000667776.1:ENST00000654559.1:ENST00000661233.1:ENST00000653213.1:ENST00000659094.1:ENST00000660964.1:ENST00000577403.6:ENST00000660358.1:ENST00000669153.1:ENST00000657121.1:ENST00000655957.1:ENST00000659289.1:ENST00000665133.1:ENST00000671558.1:ENST00000666542.1:ENST00000663512.1:ENST00000582862.6:ENST00000578835.5:ENST00000669312.1:ENST00000581430.5:ENST00000581212.1:ENST00000658090.1	lncRNA	lncRNA	lncRNA	lncRNA	2	63	2	3.27922	3.32946	3.3797	0.00312717	0.00154501	0.0499153	0.0362716
chr1	211268665	211268763	305789	0	+	0.326531	(0.32,0.35]	chr1	35244	4	INTRON	INTRON	RCOR3	ENSG00000117625.14	ENST00000534478.5:ENST00000533469.5:ENST00000367006.8:ENST00000419091.7:ENST00000452621.6:ENST00000528926.5:ENST00000528408.5:ENST00000529572.5:ENST00000367005.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	30	2	2.48693	3.32937	4.17181	0.04531	0.0338094	0.149888	0.146709
chr1	246092245	246092345	676554	0	-	0.35	(0.32,0.35]	chr1	79717	388	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000391836.3:ENST00000464398.1:ENST00000453676.5:ENST00000462422.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	30	2	2.48693	3.32937	4.17181	0.04531	0.0338094	0.149888	0.146709
chr13	99214182	99214281	5524569	0	+	0.323232	(0.32,0.35]	chr13	528219	83	INTRON	INTRON	UBAC2	ENSG00000134882.16	ENST00000355700.9:ENST00000403766.8:ENST00000468067.5:ENST00000473091.5:ENST00000376440.6:ENST00000457666.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	30	2	2.48693	3.32937	4.17181	0.04531	0.0338094	0.149888	0.146709
chr14	102168643	102168741	5821571	0	+	0.326531	(0.32,0.35]	chr14	552341	11	INTRON	INTRON	WDR20	ENSG00000140153.18	ENST00000557485.5:ENST00000335263.9:ENST00000424963.6:ENST00000322340.9:ENST00000556807.1:ENST00000555879.5:ENST00000342702.8:ENST00000558567.5:ENST00000299135.6:ENST00000454394.2:ENST00000556094.1:ENST00000556511.2:ENST00000557186.5:ENST00000558854.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	30	2	2.48693	3.32937	4.17181	0.04531	0.0338094	0.149888	0.146709
chr16	80980979	80981060	6530429	0	-	0.333333	(0.32,0.35]	chr16	632636	1	SS3_PROX	SS3_PROX:INTRON	CMC2	ENSG00000103121.9	ENST00000219400.8:ENST00000563779.5:ENST00000566918.5:ENST00000486645.5:ENST00000570195.5:ENST00000566047.5:ENST00000561614.5:ENST00000566231.5:ENST00000569187.5:ENST00000570086.5:ENST00000564249.5:ENST00000565650.5:ENST00000567593.5:ENST00000568228.5:ENST00000565914.5:ENST00000565108.5:ENST00000565925.5:ENST00000564174.5:ENST00000565613.5:ENST00000569666.5:ENST00000562713.3:ENST00000562828.5:ENST00000630396.1:ENST00000565514.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	30	2	2.48693	3.32937	4.17181	0.04531	0.0338094	0.149888	0.146709
chr2	10351822	10351922	692120	0	+	0.35	(0.32,0.35]	chr2	81133	213	INTRON	INTRON	HPCAL1	ENSG00000115756.13	ENST00000423674.5:ENST00000307845.8:ENST00000381765.7:ENST00000419810.6:ENST00000622018.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	30	2	2.48693	3.32937	4.17181	0.04531	0.0338094	0.149888	0.146709
chr2	31959572	31959672	1090606	0	-	0.35	(0.32,0.35]	chr2	116908	158	INTRON	INTRON	MEMO1:DPY30	ENSG00000162959.14:ENSG00000162961.14	ENST00000295065.9:ENST00000446765.5:ENST00000404530.6:ENST00000379383.7:ENST00000490459.5:ENST00000426310.6:ENST00000413686.1:ENST00000407893.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	30	2	2.48693	3.32937	4.17181	0.04531	0.0338094	0.149888	0.146709
chr3	47928750	47928850	1685890	0	-	0.35	(0.32,0.35]	chr3	172242	4	SS3_PROX	SS3_PROX:INTRON	MAP4	ENSG00000047849.22	ENST00000683076.1:ENST00000395734.7:ENST00000426837.6:ENST00000360240.10:ENST00000423088.5:ENST00000633710.1	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	2.48693	3.32937	4.17181	0.04531	0.0338094	0.149888	0.146709
chr4	102812774	102812873	2213212	0	-	0.343434	(0.32,0.35]	chr4	216758	25	EXON_MRNA	EXON_MRNA:INTRON	UBE2D3	ENSG00000109332.20	ENST00000453744.7:ENST00000394804.6:ENST00000394803.9:ENST00000394801.8:ENST00000343106.9:ENST00000508474.5:ENST00000503742.5:ENST00000321805.11:ENST00000350435.11:ENST00000338145.7:ENST00000349311.12:ENST00000504211.5:ENST00000357194.10:ENST00000505207.5:ENST00000507845.5:ENST00000502404.5:ENST00000508635.5:ENST00000505307.5:ENST00000510129.5:ENST00000508476.5:ENST00000502563.5:ENST00000508238.5:ENST00000514755.5:ENST00000508974.5:ENST00000502690.5:ENST00000508818.5:ENST00000503418.5:ENST00000508249.1:ENST00000513098.5:ENST00000503282.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	30	2	2.48693	3.32937	4.17181	0.04531	0.0338094	0.149888	0.146709
chr4	121858602	121858699	2234003	0	-	0.340206	(0.32,0.35]	chr4	218886	1	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	BBS7	ENSG00000138686.10	ENST00000264499.9:ENST00000506636.1:ENST00000508536.1:ENST00000505692.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	30	2	2.48693	3.32937	4.17181	0.04531	0.0338094	0.149888	0.146709
chr5	105383860	105383960	2696265	0	-	0.33	(0.32,0.35]	chr5	254248	1376	INTRON	INTRON	ENSG00000251574	ENSG00000251574.8	ENST00000503650.1	lncRNA	lncRNA	lncRNA	lncRNA	1	30	2	2.48693	3.32937	4.17181	0.04531	0.0338094	0.149888	0.146709
chr6	45261230	45261330	3102819	0	-	0.35	(0.32,0.35]	chr6	290480	97	INTRON	INTRON	SUPT3H	ENSG00000196284.17	ENST00000475057.5:ENST00000371459.6:ENST00000371460.5:ENST00000459689.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	30	2	2.48693	3.32937	4.17181	0.04531	0.0338094	0.149888	0.146709
chr7	152257015	152257115	3679488	0	-	0.33	(0.32,0.35]	chr7	341597	39	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682916.1:ENST00000682280.1:ENST00000680039.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	30	2	2.48693	3.32937	4.17181	0.04531	0.0338094	0.149888	0.146709
chr1	202806663	202806751	620733	0	-	0.375	(0.35,0.378]	chr1	73673	3	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	KDM5B	ENSG00000117139.18	ENST00000367265.9:ENST00000648338.1:ENST00000649542.1:ENST00000647757.1:ENST00000367264.7:ENST00000648473.1:ENST00000650569.1:ENST00000648056.1:ENST00000649770.1:ENST00000648469.1:ENST00000650417.1:ENST00000235790.9:ENST00000648738.1:ENST00000648958.1:ENST00000602511.1:ENST00000650368.1:ENST00000649200.1:ENST00000648354.1:ENST00000650493.1:ENST00000470573.5:ENST00000467487.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	29	2	2.57049	3.329325	4.08816	0.046021	0.0262669	0.149888	0.133676
chr12	116202168	116202268	5424793	0	-	0.36	(0.35,0.378]	chr12	518271	210	INTRON	INTRON	MED13L	ENSG00000123066.9	ENST00000281928.9:ENST00000650226.1:ENST00000548743.2:ENST00000647567.1:ENST00000551197.2	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	2.57049	3.329325	4.08816	0.046021	0.0262669	0.149888	0.133676
chr6	107892683	107892782	3182173	0	-	0.353535	(0.35,0.378]	chr6	296380	92	INTRON	INTRON	SEC63	ENSG00000025796.14	ENST00000369002.9	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	2.57049	3.329325	4.08816	0.046021	0.0262669	0.149888	0.133676
chr6	149359215	149359315	2995130	0	+	0.36	(0.35,0.378]	chr6	280226	121	INTRON	INTRON	TAB2	ENSG00000055208.19	ENST00000606202.1:ENST00000636456.1:ENST00000637181.2:ENST00000367456.5:ENST00000606797.5:ENST00000538427.5:ENST00000470466.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	29	2	2.57049	3.329325	4.08816	0.046021	0.0262669	0.149888	0.133676
chr22	21598756	21598856	7482015	0	+	0.55	(0.515,0.57]	chr22	763238	54	INTRON	INTRON	UBE2L3	ENSG00000185651.16	ENST00000458578.6:ENST00000545681.2:ENST00000696046.1:ENST00000342192.9:ENST00000496722.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	53	2	3.03037	3.3292900000000003	3.62821	0.00608732	4.12866e-4	0.0676501	0.0181365
chr5	53944019	53944118	2617244	0	-	0.383838	(0.378,0.408]	chr5	248835	320	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	41	2	1.88729	3.32917	4.77105	0.0532327	0.00330823	0.162538	0.0527031
chr7	96267799	96267899	3575712	0	-	0.38	(0.378,0.408]	chr7	333065	325	INTRON	INTRON	SLC25A13	ENSG00000004864.14	ENST00000265631.10:ENST00000416240.6:ENST00000472162.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	41	2	1.88729	3.32917	4.77105	0.0532327	0.00330823	0.162538	0.0527031
chr10	998105	998204	4379094	0	+	0.565657	(0.515,0.57]	chr10	403833	4	INTRON	INTRON	GTPBP4	ENSG00000107937.19	ENST00000360803.9:ENST00000491635.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	40	2	1.7492	3.32916	4.90912	0.0382504	0.0021669	0.15832	0.0417866
chr16	29451908	29452008	6470059	0	-	0.52	(0.515,0.57]	chr16	625073	4	SS5_PROX	SS5_PROX:INTRON	ENSG00000288632:BOLA2-SMG1P6	ENSG00000288632.1:ENSG00000261740.7	ENST00000675579.1:ENST00000569622.6:ENST00000565417.6:ENST00000568556.2:ENST00000380596.10	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:nonsense_mediated_decay:lncRNA	3	40	2	1.7492	3.32916	4.90912	0.0382504	0.0021669	0.15832	0.0417866
chr4	184709472	184709571	2304640	0	-	0.272727	[0,0.28]	chr4	222921	67	INTRON	INTRON	CENPU	ENSG00000151725.12	ENST00000281453.10:ENST00000510146.5:ENST00000506535.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	46	2	1.8986	3.32912	4.75964	0.0531512	0.0232081	0.179787	0.118148
chr9	72360321	72360379	4266232	0	-	0.275862	[0,0.28]	chr9	392634	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ZFAND5	ENSG00000107372.13	ENST00000376962.10:ENST00000237937.7:ENST00000376960.8:ENST00000488164.5:ENST00000343431.6:ENST00000376956.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	46	2	1.8986	3.32912	4.75964	0.0531512	0.0232081	0.179787	0.118148
chr6	160063050	160063119	3023943	0	+	0.521739	(0.515,0.57]	chr6	282157	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	IGF2R	ENSG00000197081.16	ENST00000676781.1:ENST00000677704.1:ENST00000356956.6:ENST00000650503.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	93	2	3.19161	3.3290949999999997	3.46658	3.49295e-4	5.8755e-5	0.017404	0.00629276
chr3	47679092	47679186	1684031	0	-	0.446809	(0.44,0.476]	chr3	172034	4	INTRON	INTRON	SMARCC1	ENSG00000173473.11	ENST00000254480.10:ENST00000425518.5:ENST00000462198.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	131	2	2.74733	3.32902	3.91071	9.96884e-4	4.72898e-6	0.0288906	0.00146697
chr11	108209282	108209382	5035054	0	-	0.33	(0.32,0.35]	chr11	474469	3	INTRON	INTRON	NPAT	ENSG00000149308.17	ENST00000278612.9:ENST00000610253.5:ENST00000531384.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	31	2	2.71269	3.32899	3.94529	0.0693433	0.0181461	0.184298	0.114853
chr2	177258213	177258313	1275782	0	-	0.34	(0.32,0.35]	chr2	134708	236	INTRON	INTRON	NFE2L2	ENSG00000116044.16	ENST00000397063.8:ENST00000464747.5:ENST00000397062.8:ENST00000446151.6:ENST00000449627.1:ENST00000448782.5:ENST00000430047.1:ENST00000586532.5:ENST00000421929.5:ENST00000423513.5:ENST00000588123.1:ENST00000477534.1:ENST00000462023.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	31	2	2.71269	3.32899	3.94529	0.0693433	0.0181461	0.184298	0.114853
chr2	182999583	182999681	1285636	0	-	0.346939	(0.32,0.35]	chr2	135406	34	INTRON	INTRON	NCKAP1	ENSG00000061676.15	ENST00000361354.9:ENST00000360982.2	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	2.71269	3.32899	3.94529	0.0693433	0.0181461	0.184298	0.114853
chr3	44790642	44790741	1412514	0	+	0.343434	(0.32,0.35]	chr3	148187	37	INTRON	INTRON	KIF15	ENSG00000163808.17	ENST00000438321.5:ENST00000326047.9:ENST00000481166.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	31	2	2.71269	3.32899	3.94529	0.0693433	0.0181461	0.184298	0.114853
chr6	99455063	99455163	3166380	0	-	0.33	(0.32,0.35]	chr6	295367	82	INTRON	INTRON	USP45	ENSG00000123552.18	ENST00000500704.7:ENST00000496518.6:ENST00000327681.10:ENST00000369233.6:ENST00000513344.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	31	2	2.71269	3.32899	3.94529	0.0693433	0.0181461	0.184298	0.114853
chr9	5001396	5001496	4095984	0	+	0.35	(0.32,0.35]	chr9	373235	150	INTRON	INTRON	JAK2	ENSG00000096968.14	ENST00000636127.1:ENST00000476574.5:ENST00000381652.4	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	2.71269	3.32899	3.94529	0.0693433	0.0181461	0.184298	0.114853
chr15	63727246	63727346	6199814	0	-	0.37	(0.35,0.378]	chr15	591343	2	SS5_PROX	SS5_PROX:INTRON	HERC1	ENSG00000103657.14	ENST00000443617.7:ENST00000561400.1	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	2.1617	3.3289800000000005	4.49626	0.0771502	0.00917582	0.196285	0.0855292
chr8	98705366	98705466	3998953	0	-	0.36	(0.35,0.378]	chr8	366070	538	INTRON	INTRON	STK3	ENSG00000104375.17	ENST00000617590.1:ENST00000419617.7:ENST00000523601.5:ENST00000518165.5:ENST00000521649.5:ENST00000424861.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	31	2	2.1617	3.3289800000000005	4.49626	0.0771502	0.00917582	0.196285	0.0855292
chr16	46696585	46696678	6342788	0	+	0.290323	(0.28,0.32]	chr16	608757	1	INTRON	INTRON	ORC6	ENSG00000091651.9	ENST00000563599.5:ENST00000219097.7:ENST00000568364.6:ENST00000566860.1:ENST00000575571.5:ENST00000567000.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	167	2	3.01897	3.32898	3.63899	4.87801e-4	4.64392e-5	0.0204446	0.00555027
chr9	4852742	4852842	4095477	0	+	0.51	(0.476,0.515]	chr9	373212	28	INTRON	INTRON	RCL1	ENSG00000120158.12	ENST00000381750.9:ENST00000442869.5:ENST00000381730.5:ENST00000381728.5:ENST00000448872.6	protein_coding	protein_coding	protein_coding	protein_coding	7	67	2	1.34709	3.3288349999999998	5.31058	0.0408438	9.15544e-4	0.161534	0.0278396
chr7	100078778	100078875	3585229	0	-	0.391753	(0.378,0.408]	chr7	334075	2	UTR5	UTR5:EXON_MRNA:INTRON	ZNF3	ENSG00000166526.18	ENST00000413658.6:ENST00000424697.5:ENST00000299667.9:ENST00000303915.10:ENST00000412947.6:ENST00000487620.1:ENST00000428683.5:ENST00000449785.5:ENST00000441298.5:ENST00000485892.5:ENST00000292393.9:ENST00000460331.5:ENST00000466121.1:ENST00000479192.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	65	2	3.1136	3.32883	3.54406	0.00443339	0.00110718	0.061054	0.0306086
chr1	174533843	174533943	260870	0	+	0.51	(0.476,0.515]	chr1	30824	844	INTRON	INTRON	RABGAP1L	ENSG00000152061.24	ENST00000357444.10:ENST00000251507.8:ENST00000681986.1:ENST00000367690.5:ENST00000526253.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	32	2	2.82673	3.328455	3.83018	0.0423385	0.0134403	0.161744	0.0946278
chr3	42591356	42591440	1405911	0	+	0.5	(0.476,0.515]	chr3	147638	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SS18L2	ENSG00000008324.12	ENST00000447630.5:ENST00000011691.6:ENST00000474941.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	32	2	2.82673	3.328455	3.83018	0.0423385	0.0134403	0.161744	0.0946278
chr5	138468645	138468739	2495856	0	+	0.351064	(0.35,0.378]	chr5	238660	7	UTR3	UTR3:EXON_MRNA	EGR1	ENSG00000120738.8	ENST00000239938.5	protein_coding	protein_coding	protein_coding	protein_coding	17	432	2	2.57732	3.3284149999999997	4.07951	2.78379e-5	7.77142e-8	0.00416518	1.19139e-4
chr2	53919919	53920005	1120044	0	-	0.313953	(0.28,0.32]	chr2	120000	3	SS5_PROX	SS5_PROX:INTRON	PSME4	ENSG00000068878.15	ENST00000404125.6:ENST00000389993.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	47	2	2.51426	3.3282000000000003	4.14214	0.0579756	0.00781326	0.167723	0.0788246
chr5	60960727	60960827	2359375	0	+	0.3	(0.28,0.32]	chr5	227644	149	INTRON	INTRON	NDUFAF2	ENSG00000164182.12	ENST00000678452.1:ENST00000677756.1:ENST00000296597.10:ENST00000511107.1:ENST00000677932.1:ENST00000502658.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	51	2	1.61031	3.32805	5.04579	0.0600513	0.00714672	0.190658	0.0723634
chr11	27457927	27458027	4937274	0	-	0.45	(0.44,0.476]	chr11	462402	447	INTRON	INTRON	LGR4	ENSG00000205213.14	ENST00000379214.9:ENST00000389858.4:ENST00000480977.2	protein_coding	protein_coding	protein_coding	protein_coding	3	44	2	1.62896	3.327995	5.02703	0.0546679	0.00278015	0.182674	0.0469265
chr22	38485834	38485934	7587873	0	-	0.35	(0.32,0.35]	chr22	776711	25	UTR3	UTR3:EXON_MRNA	DDX17	ENSG00000100201.23	ENST00000403230.3:ENST00000396821.8:ENST00000431312.2:ENST00000216019.11	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	183	2	3.08557	3.3279199999999998	3.57027	2.85124e-4	9.07093e-6	0.0154954	0.00216547
chr19	5085994	5086094	7004600	0	+	0.6	(0.57,1]	chr19	694855	31	INTRON	INTRON	KDM4B	ENSG00000127663.15	ENST00000159111.9:ENST00000611640.4:ENST00000381759.8:ENST00000536461.5:ENST00000589104.5:ENST00000588961.1:ENST00000588361.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	69	2	3.10913	3.32789	3.54665	6.33795e-5	2.33646e-5	0.00708877	0.00378116
chr11	47483055	47483154	4949683	0	-	0.444444	(0.44,0.476]	chr11	464175	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CELF1	ENSG00000149187.19	ENST00000310513.10:ENST00000687097.1:ENST00000395290.6:ENST00000358597.7:ENST00000395292.6:ENST00000361904.7:ENST00000531165.5:ENST00000532048.5:ENST00000422993.2:ENST00000532146.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	131	2	3.01549	3.32788	3.64027	1.79714e-4	4.59928e-5	0.0116696	0.00586921
chr10	78020754	78020851	4655281	0	-	0.402062	(0.378,0.408]	chr10	428902	7	INTRON	INTRON	POLR3A	ENSG00000148606.14	ENST00000372371.8	protein_coding	protein_coding	protein_coding	protein_coding	5	65	2	1.48285	3.32783	5.17281	0.044825	7.27294e-4	0.149888	0.0245647
chr5	43126238	43126338	2349080	0	+	0.42	(0.408,0.44]	chr5	226661	13	INTRON	INTRON	ZNF131	ENSG00000172262.12	ENST00000515326.5:ENST00000682664.1:ENST00000510026.5:ENST00000504359.1:ENST00000509156.5:ENST00000508259.5:ENST00000507218.5:ENST00000306938.8:ENST00000505606.6:ENST00000509634.5:ENST00000509341.5:ENST00000511736.5:ENST00000509931.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	109	2	3.12171	3.3277900000000002	3.53387	6.63666e-4	4.96441e-5	0.0234815	0.00577648
chr19	37228243	37228340	7060293	0	+	0.381443	(0.378,0.408]	chr19	704888	1	INTRON	INTRON	ZNF383	ENSG00000188283.12	ENST00000586068.5:ENST00000590503.5:ENST00000684119.1:ENST00000589413.5:ENST00000352998.7:ENST00000588371.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	30	2	2.13703	3.327785	4.51854	0.0797592	0.00748824	0.19979	0.0772645
chr3	28290503	28290603	1391037	0	+	0.38	(0.378,0.408]	chr3	145643	268	INTRON	INTRON	CMC1	ENSG00000187118.14	ENST00000477739.1:ENST00000423894.5:ENST00000466830.6:ENST00000334841.10:ENST00000418849.2:ENST00000396610.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	30	2	2.13703	3.327785	4.51854	0.0797592	0.00748824	0.19979	0.0772645
chr4	103166149	103166249	2215274	0	-	0.39	(0.378,0.408]	chr4	217118	22	INTRON	INTRON	CENPE	ENSG00000138778.14	ENST00000380026.8:ENST00000265148.9	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	2.13703	3.327785	4.51854	0.0797592	0.00748824	0.19979	0.0772645
chr6	85546583	85546683	3150443	0	-	0.38	(0.378,0.408]	chr6	293757	1	SS5_PROX	SS5_PROX:INTRON	ENSG00000271793:SNX14	ENSG00000271793.2:ENSG00000135317.14	ENST00000682083.1:ENST00000683074.1:ENST00000681965.1:ENST00000682171.1:ENST00000684150.1:ENST00000683785.1:ENST00000682497.1:ENST00000684647.1:ENST00000683643.1:ENST00000682023.1:ENST00000682022.1:ENST00000683542.1:ENST00000683126.1:ENST00000683857.1:ENST00000683898.1:ENST00000682854.1:ENST00000682491.1:ENST00000682174.1:ENST00000684239.1:ENST00000682939.1:ENST00000684570.1:ENST00000682057.1:ENST00000682878.1:ENST00000683880.1:ENST00000684422.1:ENST00000682504.1:ENST00000683726.1:ENST00000684680.1:ENST00000683196.1:ENST00000683458.1:ENST00000683803.1:ENST00000684281.1:ENST00000682991.1:ENST00000683754.1:ENST00000683481.1:ENST00000682455.1:ENST00000682034.1:ENST00000684451.1:ENST00000683583.1:ENST00000682776.1:ENST00000683873.1:ENST00000683878.1:ENST00000683195.1:ENST00000682995.1:ENST00000682374.1:ENST00000683698.1:ENST00000682454.1:ENST00000682694.1:ENST00000682412.1:ENST00000682682.1:ENST00000346348.7:ENST00000314673.8:ENST00000682633.1:ENST00000683085.1:ENST00000682688.1:ENST00000684319.1:ENST00000683577.1:ENST00000682709.1:ENST00000684299.1:ENST00000682133.1:ENST00000682594.1:ENST00000683473.1:ENST00000682106.1:ENST00000683364.1:ENST00000683436.1:ENST00000684220.1:ENST00000683909.1:ENST00000684118.1:ENST00000681981.1:ENST00000682738.1:ENST00000509338.6:ENST00000684717.1:ENST00000682660.1:ENST00000683073.1:ENST00000515216.6:ENST00000684581.1:ENST00000683479.1:ENST00000682464.1:ENST00000684108.1:ENST00000682514.1:ENST00000684017.1:ENST00000684273.1:ENST00000513865.5:ENST00000505648.5:ENST00000508980.5:ENST00000369627.6:ENST00000503491.5:ENST00000508658.6:ENST00000683097.1:ENST00000683541.1:ENST00000683759.1:ENST00000369635.7:ENST00000684462.1:ENST00000682168.1:ENST00000513869.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	30	2	2.13703	3.327785	4.51854	0.0797592	0.00748824	0.19979	0.0772645
chr12	123395944	123396044	5242699	0	+	0.49	(0.476,0.515]	chr12	498200	2	SS3_PROX	SS3_PROX:INTRON	KMT5A	ENSG00000183955.14	ENST00000402868.8:ENST00000437519.5:ENST00000478781.6:ENST00000461103.5:ENST00000437502.1:ENST00000485469.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	82	2	2.54157	3.327715	4.11386	0.00697457	4.0075e-5	0.0718189	0.00513517
chr1	25488473	25488572	48532	0	+	0.40404	(0.378,0.408]	chr1	5963	23	INTRON	INTRON	MACO1	ENSG00000204178.11	ENST00000399766.7:ENST00000374343.5:ENST00000647928.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	28	2	2.54849	3.32755	4.10661	0.0399023	0.0273196	0.143072	0.136494
chr1	52929172	52929272	105462	0	+	0.39	(0.378,0.408]	chr1	13799	5	PRIMIRNA	PRIMIRNA:INTRON	SCP2:ENSG00000264834	ENSG00000116171.19:ENSG00000264834.1	ENST00000371514.8:ENST00000478631.6:ENST00000407246.6:ENST00000371509.8:ENST00000528311.5:ENST00000371513.9:ENST00000528809.1:ENST00000580581.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript:primary_miRNA	1	28	2	2.54849	3.32755	4.10661	0.0399023	0.0273196	0.143072	0.136494
chr1	77637464	77637563	493007	0	-	0.383838	(0.378,0.408]	chr1	58300	37	INTRON	INTRON	ZZZ3	ENSG00000036549.13	ENST00000370801.8:ENST00000370798.5:ENST00000433749.5:ENST00000414381.5:ENST00000463166.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	28	2	2.54849	3.32755	4.10661	0.0399023	0.0273196	0.143072	0.136494
chr1	100057070	100057170	171795	0	+	0.4	(0.378,0.408]	chr1	18603	67	INTRON	INTRON	ENSG00000283761:MFSD14A	ENSG00000283761.1:ENSG00000156875.14	ENST00000638792.1:ENST00000638968.1:ENST00000639040.1:ENST00000639037.1:ENST00000638779.1:ENST00000639171.1:ENST00000640238.1:ENST00000640357.1:ENST00000370152.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	28	2	2.54849	3.32755	4.10661	0.0399023	0.0273196	0.143072	0.136494
chr10	21564600	21564699	4404718	0	+	0.393939	(0.378,0.408]	chr10	406446	64	INTRON	INTRON	MLLT10	ENSG00000078403.17	ENST00000651097.1:ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000650772.1:ENST00000651298.1:ENST00000495130.5:ENST00000377059.7:ENST00000476557.5:ENST00000462999.5:ENST00000430455.2:ENST00000479634.1:ENST00000480415.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	28	2	2.54849	3.32755	4.10661	0.0399023	0.0273196	0.143072	0.136494
chr10	109877589	109877689	4696638	0	-	0.4	(0.378,0.408]	chr10	433046	21	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	XPNPEP1	ENSG00000108039.18	ENST00000322238.12:ENST00000369683.5:ENST00000502935.6:ENST00000488118.6:ENST00000494564.5:ENST00000510988.5:ENST00000472336.5:ENST00000513817.5:ENST00000508525.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	28	2	2.54849	3.32755	4.10661	0.0399023	0.0273196	0.143072	0.136494
chr15	50662268	50662367	6173037	0	-	0.40404	(0.378,0.408]	chr15	588391	41	INTRON	INTRON	TRPM7:ENSG00000288645	ENSG00000092439.16:ENSG00000288645.1	ENST00000646667.1:ENST00000560955.5:ENST00000676296.1	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	2.54849	3.32755	4.10661	0.0399023	0.0273196	0.143072	0.136494
chr15	58678823	58678923	6192801	0	-	0.38	(0.378,0.408]	chr15	589959	3	SS5_PROX	SS5_PROX:INTRON	ADAM10	ENSG00000137845.15	ENST00000260408.8:ENST00000402627.5:ENST00000561288.1:ENST00000396136.6:ENST00000559053.1:ENST00000558733.5:ENST00000439637.5:ENST00000497846.5:ENST00000558004.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	28	2	2.54849	3.32755	4.10661	0.0399023	0.0273196	0.143072	0.136494
chr16	11016294	11016394	6288274	0	+	0.38	(0.378,0.408]	chr16	602178	126	INTRON	INTRON	CLEC16A	ENSG00000038532.16	ENST00000409790.6:ENST00000409552.4:ENST00000494853.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	28	2	2.54849	3.32755	4.10661	0.0399023	0.0273196	0.143072	0.136494
chr17	64654456	64654556	6817059	0	-	0.39	(0.378,0.408]	chr17	673955	475	INTRON	INTRON	SMURF2	ENSG00000108854.16	ENST00000262435.14:ENST00000582081.5:ENST00000578386.5:ENST00000585301.1:ENST00000578200.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	28	2	2.54849	3.32755	4.10661	0.0399023	0.0273196	0.143072	0.136494
chr2	159725422	159725522	899614	0	+	0.39	(0.378,0.408]	chr2	99520	93	INTRON	INTRON	MARCHF7	ENSG00000136536.15	ENST00000539065.5:ENST00000259050.8:ENST00000409175.6:ENST00000421037.1:ENST00000473749.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	28	2	2.54849	3.32755	4.10661	0.0399023	0.0273196	0.143072	0.136494
chr6	24665418	24665518	3070559	0	-	0.38	(0.378,0.408]	chr6	285330	63	INTRON	INTRON	TDP2	ENSG00000111802.14	ENST00000378198.9:ENST00000341060.3:ENST00000478507.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	28	2	2.54849	3.32755	4.10661	0.0399023	0.0273196	0.143072	0.136494
chr7	5225522	5225622	3272326	0	+	0.38	(0.378,0.408]	chr7	304134	3	SS3_PROX	SS3_PROX:INTRON	WIPI2	ENSG00000157954.15	ENST00000401525.7:ENST00000288828.9:ENST00000404704.7:ENST00000466014.5:ENST00000382384.6:ENST00000484262.1:ENST00000480238.5:ENST00000488359.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	28	2	2.54849	3.32755	4.10661	0.0399023	0.0273196	0.143072	0.136494
chr7	17846391	17846490	3495606	0	-	0.393939	(0.378,0.408]	chr7	326438	3	INTRON	INTRON	SNX13	ENSG00000071189.21	ENST00000428135.7:ENST00000611725.4:ENST00000409076.6:ENST00000444712.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	28	2	2.54849	3.32755	4.10661	0.0399023	0.0273196	0.143072	0.136494
chr17	75223702	75223802	6674447	0	+	0.17	[0,0.28]	chr17	651381	50	INTRON	INTRON	NUP85	ENSG00000125450.11	ENST00000245544.9:ENST00000583948.5:ENST00000579324.5:ENST00000449421.6:ENST00000581104.5:ENST00000579298.5:ENST00000578830.5:ENST00000583877.5:ENST00000577561.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	38	2	2.27119	3.3274749999999997	4.38376	0.070351	0.0258536	0.184298	0.133676
chr16	68110191	68110291	6370472	0	+	0.54	(0.515,0.57]	chr16	612188	206	INTRON	INTRON	ENSG00000261864:NFATC3	ENSG00000261864.1:ENSG00000072736.19	ENST00000548144.1:ENST00000563319.5:ENST00000569766.5:ENST00000553077.5:ENST00000566301.5:ENST00000549350.5:ENST00000566893.5:ENST00000575270.5:ENST00000561714.5:ENST00000346183.8:ENST00000568466.6:ENST00000539828.6:ENST00000562171.1:ENST00000349223.9:ENST00000329524.8:ENST00000379165.8:ENST00000562926.5:ENST00000570212.5:ENST00000563796.5:ENST00000567152.5:ENST00000563288.5:ENST00000535127.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA:processed_transcript	3	40	2	1.67758	3.3274	4.97722	0.0471728	0.00168681	0.168737	0.0370386
chr1	21164563	21164663	393507	0	-	0.5	(0.476,0.515]	chr1	46836	516	INTRON	INTRON	EIF4G3	ENSG00000075151.24	ENST00000374935.7:ENST00000602326.6:ENST00000685872.1:ENST00000686579.1:ENST00000688741.1:ENST00000400422.6:ENST00000634879.2:ENST00000693470.1:ENST00000685814.1:ENST00000356916.7:ENST00000682284.1:ENST00000438975.5:ENST00000411888.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	129	2	3.23673	3.3270999999999997	3.41747	1.45317e-4	5.05074e-5	0.0110154	0.00582942
chr12	116175961	116176059	5424529	0	-	0.469388	(0.44,0.476]	chr12	518267	7	INTRON	INTRON	MED13L:ENSG00000258337	ENSG00000123066.9:ENSG00000258337.1	ENST00000281928.9:ENST00000650226.1:ENST00000548743.2:ENST00000647567.1:ENST00000551197.2:ENST00000549373.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	3	81	2	3.22098	3.3270150000000003	3.43305	0.00159668	2.82213e-4	0.0364566	0.0149966
chr21	45496199	45496299	7420456	0	+	0.59	(0.57,1]	chr21	756552	3	SS3_PROX	SS3_PROX:INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1:ENST00000355480.10:ENST00000359759.8:ENST00000342220.9:ENST00000459895.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	98	2	1.64866	3.3269849999999996	5.00531	0.00505131	1.65872e-8	0.0646039	4.11909e-5
chr16	74332066	74332149	6523169	0	-	0.518072	(0.515,0.57]	chr16	631553	1	SS5_PROX	SS5_PROX:INTRON	ENSG00000259972	ENSG00000259972.3	ENST00000565313.1:ENST00000561921.1	lncRNA	lncRNA	lncRNA	lncRNA	5	113	2	3.18731	3.3269450000000003	3.46658	7.269e-5	5.8755e-5	0.00767614	0.00629276
chr19	58245686	58245786	7106694	0	+	0.44	(0.408,0.44]	chr19	713322	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	ZNF544	ENSG00000198131.15	ENST00000599227.5:ENST00000687789.1:ENST00000594384.5:ENST00000597240.5:ENST00000596597.5:ENST00000652201.1:ENST00000596825.5:ENST00000596929.5:ENST00000596677.5:ENST00000600220.5:ENST00000600044.5:ENST00000596652.5:ENST00000599953.1:ENST00000598880.5:ENST00000600775.5:ENST00000595981.5:ENST00000627781.2:ENST00000269829.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	44	2	1.69566	3.326915	4.95817	0.0453922	0.00372419	0.164236	0.0535094
chr10	16440187	16440287	4397814	0	+	0.45	(0.44,0.476]	chr10	406031	23	INTRON	INTRON	PTER	ENSG00000165983.15	ENST00000423462.6:ENST00000378000.5:ENST00000535784.7	protein_coding	protein_coding	protein_coding	protein_coding	3	81	2	2.9044	3.326825	3.74925	0.00132926	4.08974e-4	0.0335085	0.0185763
chr15	99637768	99637868	6114870	0	+	0.5	(0.476,0.515]	chr15	582076	42	INTRON	INTRON	MEF2A	ENSG00000068305.18	ENST00000560493.5:ENST00000354410.9:ENST00000558812.5:ENST00000558856.5:ENST00000685785.1:ENST00000559036.5:ENST00000557785.5:ENST00000558983.5:ENST00000557942.6:ENST00000338042.11:ENST00000558049.5:ENST00000449277.6:ENST00000690055.1:ENST00000691492.1:ENST00000686611.1:ENST00000559903.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	44	2	1.68092	3.3267249999999997	4.97253	0.0474026	0.00311573	0.169265	0.0498063
chr2	230730550	230730650	1030336	0	+	0.49	(0.476,0.515]	chr2	110002	161	INTRON	INTRON	CAB39	ENSG00000135932.12	ENST00000258418.10:ENST00000409788.7:ENST00000410084.7	protein_coding	protein_coding	protein_coding	protein_coding	3	44	2	1.68092	3.3267249999999997	4.97253	0.0474026	0.00311573	0.169265	0.0498063
chr4	99048532	99048632	2003252	0	+	0.49	(0.476,0.515]	chr4	199872	4	SS3_PROX	SS3_PROX:INTRON	METAP1	ENSG00000164024.12	ENST00000296411.11:ENST00000510133.5:ENST00000514051.1	protein_coding	protein_coding	protein_coding	protein_coding	3	44	2	1.68092	3.3267249999999997	4.97253	0.0474026	0.00311573	0.169265	0.0498063
chr16	89483644	89483744	6543533	0	-	0.52	(0.515,0.57]	chr16	634281	520	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	12	241	2	3.00291	3.326645	3.65038	2.55215e-6	9.3456e-7	0.00101726	6.01421e-4
chr1	21124214	21124314	393103	0	-	0.49	(0.476,0.515]	chr1	46836	112	INTRON	INTRON	EIF4G3	ENSG00000075151.24	ENST00000374935.7:ENST00000602326.6:ENST00000685872.1:ENST00000686579.1:ENST00000688741.1:ENST00000400422.6:ENST00000634879.2:ENST00000693470.1:ENST00000685814.1:ENST00000356916.7:ENST00000682284.1:ENST00000438975.5:ENST00000411888.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	108	2	3.32395	3.326635	3.32932	2.34553e-4	1.60666e-4	0.0140266	0.0109124
chr1	27458309	27458409	406446	0	-	0.19	[0,0.28]	chr1	48986	290	INTRON	INTRON	WASF2	ENSG00000158195.11	ENST00000618852.5:ENST00000536657.1	protein_coding	protein_coding	protein_coding	protein_coding	2	47	2	2.10688	3.3264899999999997	4.5461	0.0365918	0.0307985	0.143385	0.138959
chr1	205613380	205613479	623313	0	-	0.222222	[0,0.28]	chr1	74129	56	UTR3	UTR3:EXON_MRNA:INTRON	ELK4	ENSG00000158711.14	ENST00000616704.4:ENST00000357992.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	47	2	2.10688	3.3264899999999997	4.5461	0.0365918	0.0307985	0.143385	0.138959
chr11	68479392	68479492	4817519	0	+	0.33	(0.32,0.35]	chr11	448907	182	INTRON	INTRON	PPP6R3	ENSG00000110075.15	ENST00000530427.5:ENST00000528635.5:ENST00000529907.5:ENST00000533127.5:ENST00000534534.5:ENST00000529344.5:ENST00000524845.5:ENST00000393800.7:ENST00000265637.8:ENST00000524904.5:ENST00000393801.7:ENST00000265636.9:ENST00000529710.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	41	2	2.19668	3.326485	4.45629	0.0246089	0.021398	0.123719	0.12011
chr11	87038586	87038686	4842815	0	+	0.34	(0.32,0.35]	chr11	451836	4	SS5_PROX	SS5_PROX:INTRON	TMEM135	ENSG00000166575.17	ENST00000340353.11:ENST00000529023.5:ENST00000526733.5:ENST00000305494.6:ENST00000532959.5:ENST00000525018.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	41	2	2.19668	3.326485	4.45629	0.0246089	0.021398	0.123719	0.12011
chr19	32620839	32620937	7169057	0	-	0.346939	(0.32,0.35]	chr19	724384	9	INTRON	INTRON	ANKRD27	ENSG00000105186.16	ENST00000306065.9	protein_coding	protein_coding	protein_coding	protein_coding	2	41	2	2.19668	3.326485	4.45629	0.0246089	0.021398	0.123719	0.12011
chr15	60453178	60453277	6195742	0	-	0.434343	(0.408,0.44]	chr15	590423	22	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	ICE2	ENSG00000128915.12	ENST00000261520.9:ENST00000558181.5:ENST00000561328.1:ENST00000561114.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	61	2	3.05705	3.326345	3.59564	0.00658331	5.73354e-4	0.0701901	0.0217398
chr3	122450535	122450635	1800963	0	-	0.44	(0.408,0.44]	chr3	180977	4	INTRON	INTRON	KPNA1	ENSG00000114030.13	ENST00000344337.11:ENST00000470904.5:ENST00000466923.5:ENST00000485027.5:ENST00000494339.5:ENST00000465882.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	61	2	3.05705	3.326345	3.59564	0.00658331	5.73354e-4	0.0701901	0.0217398
chr16	23850667	23850767	6323905	0	+	0.34	(0.32,0.35]	chr16	605693	129	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000498058.1:ENST00000645517.1:ENST00000498739.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	169	2	2.40726	3.32632	4.24538	4.11364e-4	6.04054e-5	0.0181365	0.00682472
chr11	3775481	3775581	4894949	0	-	0.37	(0.35,0.378]	chr11	458909	2	SS5_PROX	SS5_PROX:INTRON	NUP98	ENSG00000110713.17	ENST00000359171.8:ENST00000324932.12:ENST00000650171.1:ENST00000355260.7:ENST00000397004.8:ENST00000397007.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	39	2	2.17079	3.326315	4.48184	0.0225978	0.0191702	0.124921	0.108861
chr7	157178389	157178489	3454339	0	+	0.37	(0.35,0.378]	chr7	322925	3	SS3_PROX	SS3_PROX:INTRON	UBE3C	ENSG00000009335.18	ENST00000611269.4:ENST00000348165.10:ENST00000389103.4	protein_coding	protein_coding	protein_coding	protein_coding	2	39	2	2.17079	3.326315	4.48184	0.0225978	0.0191702	0.124921	0.108861
chr11	57408369	57408464	4953254	0	-	0.431579	(0.408,0.44]	chr11	464895	6	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	ENSG00000254979:SLC43A3	ENSG00000254979.5:ENSG00000134802.18	ENST00000534081.5:ENST00000529411.1:ENST00000395124.6:ENST00000395123.6:ENST00000625097.1:ENST00000352187.5:ENST00000529554.5:ENST00000525205.5:ENST00000533524.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:TEC	8	221	2	2.93539	3.3261700000000003	3.71695	9.4061e-5	1.41807e-6	0.00813008	7.75185e-4
chr6	157454429	157454529	3012275	0	+	0.28	[0,0.28]	chr6	281268	718	INTRON	INTRON	ZDHHC14	ENSG00000175048.17	ENST00000414563.6:ENST00000359775.10	protein_coding	protein_coding	protein_coding	protein_coding	2	53	2	1.94204	3.326105	4.71017	0.0544139	0.0114708	0.164972	0.0956037
chr5	146150586	146150683	2747077	0	-	0.463918	(0.44,0.476]	chr5	258830	5	INTRON	INTRON	LARS1	ENSG00000133706.19	ENST00000674174.1:ENST00000674170.1:ENST00000674479.1:ENST00000674309.1:ENST00000674218.1:ENST00000674467.1:ENST00000674290.1:ENST00000674447.1:ENST00000674270.1:ENST00000674383.1:ENST00000674191.1:ENST00000674158.1:ENST00000394434.7:ENST00000674398.1:ENST00000674277.1:ENST00000274562.13:ENST00000510191.5:ENST00000674310.1:ENST00000512412.2:ENST00000508667.5:ENST00000507095.1:ENST00000674417.1:ENST00000674450.1:ENST00000674412.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	178	2	3.21499	3.326035	3.43708	2.65204e-5	1.63578e-5	0.00427068	0.00305192
chr1	28975037	28975137	59561	0	+	0.47	(0.44,0.476]	chr1	7621	599	INTRON	INTRON	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000647918.1:ENST00000646800.1:ENST00000644342.1:ENST00000646189.1:ENST00000482464.6:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000646260.1:ENST00000373798.5:ENST00000644600.1:ENST00000649674.1:ENST00000643173.1:ENST00000343067.9:ENST00000644780.1:ENST00000650265.1:ENST00000648181.1:ENST00000643604.1:ENST00000648891.1:ENST00000373797.2:ENST00000349460.9:ENST00000645184.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	31	2	2.67572	3.32599	3.97626	0.0300538	0.0212064	0.142135	0.113017
chr11	9589095	9589194	4730962	0	+	0.363636	(0.35,0.378]	chr11	438137	6	UTR3	UTR3:EXON_MRNA:INTRON	WEE1	ENSG00000166483.12	ENST00000680141.1:ENST00000450114.7:ENST00000299613.10:ENST00000681684.1:ENST00000530712.6:ENST00000527848.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	66	2	2.99044	3.3259749999999997	3.66151	0.00894806	4.717e-4	0.0799922	0.0196294
chr7	99456500	99456572	3362038	0	+	0.638889	(0.57,1]	chr7	314019	1	CDS	CDS:UTR3:EXON_MRNA	CPSF4	ENSG00000160917.15	ENST00000436336.6:ENST00000292476.10:ENST00000451876.5:ENST00000441580.5:ENST00000452047.1:ENST00000440514.1:ENST00000469897.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	24	2	2.05026	3.3259350000000003	4.60161	0.0321326	0.00142229	0.145026	0.0340865
chr2	3460843	3460942	686572	0	+	0.585859	(0.57,1]	chr2	80529	3	EXON_LNCRNA	EXON_LNCRNA:INTRON	TRAPPC12	ENSG00000171853.16	ENST00000382110.6:ENST00000324266.10:ENST00000417243.5:ENST00000469147.5:ENST00000433382.5:ENST00000462983.5:ENST00000479897.5:ENST00000415624.5:ENST00000497597.5:ENST00000473348.5:ENST00000461577.5:ENST00000489032.5:ENST00000437733.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	34	2	3.22856	3.325895	3.42323	0.00205928	8.58388e-4	0.0420839	0.0267428
chr7	152827913	152828013	3451210	0	+	0.47	(0.44,0.476]	chr7	322567	24	INTRON	INTRON	ACTR3B	ENSG00000133627.18	ENST00000377776.7:ENST00000256001.13:ENST00000397282.2:ENST00000479402.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	82	2	2.97428	3.3258349999999997	3.67739	0.00125568	3.8961e-4	0.0323608	0.0177751
chr7	39953417	39953517	3310653	0	+	0.32	(0.28,0.32]	chr7	307478	6	INTRON	INTRON	CDK13	ENSG00000065883.17	ENST00000340829.10:ENST00000181839.10:ENST00000613626.4:ENST00000646039.1:ENST00000643859.1	protein_coding	protein_coding	protein_coding	protein_coding	3	53	2	1.98806	3.325825	4.66359	0.0199553	0.0193496	0.120668	0.108861
chr10	63431928	63432028	4635051	0	-	0.54	(0.515,0.57]	chr10	426236	511	INTRON	INTRON	JMJD1C	ENSG00000171988.20	ENST00000399262.7:ENST00000633035.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	70	2	3.20141	3.325775	3.45014	0.00116948	2.65803e-4	0.0312127	0.0144243
chr8	48026966	48027066	3752422	0	+	0.52	(0.515,0.57]	chr8	349044	180	INTRON	INTRON	UBE2V2	ENSG00000169139.12	ENST00000523432.5:ENST00000521346.5:ENST00000523111.7:ENST00000518360.5:ENST00000517630.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	36	2	2.15051	3.3257649999999996	4.50102	0.0238113	0.00510768	0.118889	0.0646039
chr8	144172410	144172509	3880564	0	+	0.565657	(0.515,0.57]	chr8	356662	36	INTRON	INTRON	MROH1	ENSG00000179832.18	ENST00000326134.10:ENST00000532255.5:ENST00000525287.5:ENST00000423230.6:ENST00000534366.5:ENST00000527552.5:ENST00000528919.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	36	2	2.15051	3.3257649999999996	4.50102	0.0238113	0.00510768	0.118889	0.0646039
chr1	45562477	45562577	93108	0	+	0.5	(0.476,0.515]	chr1	12522	2	INTRON	INTRON	AKR1A1	ENSG00000117448.14	ENST00000372070.7:ENST00000621846.4:ENST00000434299.5:ENST00000351829.9:ENST00000496999.5:ENST00000476957.5:ENST00000481885.5:ENST00000471651.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	29	2	2.3223	3.3257250000000003	4.32915	0.0519312	0.0124637	0.159306	0.0973643
chr1	153857235	153857335	557108	0	-	0.5	(0.476,0.515]	chr1	65983	285	INTRON	INTRON	GATAD2B	ENSG00000143614.10	ENST00000368655.5:ENST00000634544.1:ENST00000634408.1:ENST00000634401.1:ENST00000634791.1:ENST00000636014.1:ENST00000637331.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	29	2	2.3223	3.3257250000000003	4.32915	0.0519312	0.0124637	0.159306	0.0973643
chr3	47907549	47907648	1685671	0	-	0.494949	(0.476,0.515]	chr3	172207	42	INTRON	INTRON	MAP4	ENSG00000047849.22	ENST00000429422.5:ENST00000683076.1:ENST00000395734.7:ENST00000426837.6:ENST00000360240.10:ENST00000383736.3:ENST00000482752.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	29	2	2.3223	3.3257250000000003	4.32915	0.0519312	0.0124637	0.159306	0.0973643
chr3	122502867	122502967	1801500	0	-	0.48	(0.476,0.515]	chr3	181034	59	INTRON	INTRON	KPNA1	ENSG00000114030.13	ENST00000344337.11:ENST00000494339.5:ENST00000465882.5:ENST00000482287.5:ENST00000476916.5:ENST00000493510.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	29	2	2.3223	3.3257250000000003	4.32915	0.0519312	0.0124637	0.159306	0.0973643
chr4	17912939	17913039	2117202	0	-	0.51	(0.476,0.515]	chr4	209129	32	INTRON	INTRON	LCORL	ENSG00000178177.17	ENST00000635767.2:ENST00000326877.8:ENST00000675131.1:ENST00000675143.1:ENST00000637787.1:ENST00000675605.1:ENST00000510451.5:ENST00000510121.5:ENST00000675927.1:ENST00000382224.5:ENST00000382226.5:ENST00000676061.1:ENST00000674942.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	29	2	2.3223	3.3257250000000003	4.32915	0.0519312	0.0124637	0.159306	0.0973643
chr7	105201628	105201728	3602023	0	-	0.48	(0.476,0.515]	chr7	336124	320	INTRON	INTRON	SRPK2	ENSG00000135250.17	ENST00000393651.8:ENST00000357311.7:ENST00000485455.1:ENST00000489828.5:ENST00000476117.1:ENST00000482897.5:ENST00000460391.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	29	2	2.3223	3.3257250000000003	4.32915	0.0519312	0.0124637	0.159306	0.0973643
chr20	5118336	5118422	7311566	0	-	0.55814	(0.515,0.57]	chr20	744484	3	SS5_PROX	SS5_PROX:INTRON	PCNA	ENSG00000132646.11	ENST00000379160.3:ENST00000379143.10	protein_coding	protein_coding	protein_coding	protein_coding	9	142	2	1.57699	3.32568	5.07437	0.0135679	8.59268e-8	0.101463	1.26663e-4
chr1	15569559	15569658	33244	0	+	0.333333	(0.32,0.35]	chr1	4063	15	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	DNAJC16	ENSG00000116138.13	ENST00000375849.5:ENST00000475133.5:ENST00000616884.4:ENST00000375847.8:ENST00000483270.1:ENST00000495523.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	172	2	2.04917	3.325475	4.60178	0.00378933	3.25997e-6	0.0542465	0.00117536
chr1	231034725	231034825	655373	0	-	0.43	(0.408,0.44]	chr1	77736	61	INTRON	INTRON	FAM89A	ENSG00000182118.8	ENST00000366654.5	protein_coding	protein_coding	protein_coding	protein_coding	3	44	2	1.6306	3.32544	5.02028	0.0544158	0.00303216	0.182272	0.0493883
chr10	45914584	45914683	4608082	0	-	0.484848	(0.476,0.515]	chr10	424473	35	INTRON	INTRON	PARGP1	ENSG00000239883.9	ENST00000688192.1:ENST00000686367.1:ENST00000693310.1:ENST00000417555.2:ENST00000687844.1:ENST00000687550.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	2	39	2	1.72558	3.325435	4.92529	0.0767648	0.00180221	0.196164	0.0392772
chr16	88772527	88772627	6540095	0	-	0.49	(0.476,0.515]	chr16	633998	227	INTRON	INTRON	PIEZO1	ENSG00000103335.22	ENST00000301015.14	protein_coding	protein_coding	protein_coding	protein_coding	2	39	2	1.72558	3.325435	4.92529	0.0767648	0.00180221	0.196164	0.0392772
chr11	85991786	85991885	5014049	0	-	0.363636	(0.35,0.378]	chr11	472947	10	INTRON	INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000630913.2:ENST00000529760.5:ENST00000528398.5:ENST00000356360.9:ENST00000529016.5:ENST00000526961.5:ENST00000530542.1	protein_coding	protein_coding	protein_coding	protein_coding	2	42	2	1.75561	3.32542	4.89523	0.0739399	0.00253947	0.190914	0.0465056
chr13	99264901	99265000	5525081	0	+	0.373737	(0.35,0.378]	chr13	528241	199	INTRON	INTRON	UBAC2	ENSG00000134882.16	ENST00000355700.9:ENST00000403766.8:ENST00000468067.5:ENST00000473091.5:ENST00000376440.6:ENST00000494576.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	42	2	1.75561	3.32542	4.89523	0.0739399	0.00253947	0.190914	0.0465056
chr1	44754649	44754749	92465	0	+	0.5	(0.476,0.515]	chr1	12286	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	KIF2C	ENSG00000142945.13	ENST00000452259.5:ENST00000493027.5:ENST00000372224.9:ENST00000455186.5:ENST00000372217.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	44	2	1.74317	3.32539	4.90761	0.0396373	0.00386428	0.161534	0.0542786
chr19	1589021	1589120	7112487	0	-	0.454545	(0.44,0.476]	chr19	714541	28	INTRON	INTRON	MBD3:ENSG00000267059	ENSG00000071655.18:ENSG00000267059.2	ENST00000434436.8:ENST00000156825.5:ENST00000585937.1:ENST00000585967.5:ENST00000592965.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	50	2	1.94723	3.32539	4.70355	0.0227424	0.00383786	0.117618	0.0562562
chr11	5413064	5413164	4897350	0	-	0.5	(0.476,0.515]	chr11	459187	658	INTRON	INTRON	HBG2:ENSG00000239920:HBE1:OR51B5	ENSG00000196565.15:ENSG00000239920.2:ENSG00000213931.7:ENSG00000167355.8	ENST00000380252.6:ENST00000380259.7:ENST00000292896.3:ENST00000380237.5:ENST00000420726.6:ENST00000420465.6:ENST00000415970.6:ENST00000418729.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:nonsense_mediated_decay:processed_transcript	2	39	2	1.79693	3.32536	4.85379	0.0649782	0.00234214	0.179417	0.0442989
chr15	49171176	49171276	6019118	0	+	0.51	(0.476,0.515]	chr15	573674	2	INTRON	INTRON	GALK2	ENSG00000156958.15	ENST00000559883.5:ENST00000559963.5:ENST00000327171.7:ENST00000560654.5:ENST00000558775.5:ENST00000561074.5:ENST00000559040.1:ENST00000396509.6:ENST00000558956.5:ENST00000559208.5:ENST00000560031.6:ENST00000559095.1:ENST00000560119.5:ENST00000558145.5:ENST00000544523.5:ENST00000560138.5:ENST00000559423.5:ENST00000559454.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	39	2	1.79693	3.32536	4.85379	0.0649782	0.00234214	0.179417	0.0442989
chr3	42568946	42569046	1670654	0	-	0.48	(0.476,0.515]	chr3	170755	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	SEC22C	ENSG00000093183.14	ENST00000264454.8:ENST00000423701.6:ENST00000273156.11:ENST00000417572.5:ENST00000449617.5:ENST00000456515.5:ENST00000493107.5:ENST00000383750.8:ENST00000450981.5:ENST00000445388.5:ENST00000454141.5:ENST00000416880.5:ENST00000420163.1:ENST00000456222.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	225	2	3.10232	3.3252800000000002	3.54824	2.4848e-5	1.70794e-6	0.00410681	7.89737e-4
chr14	101764753	101764853	5818524	0	+	0.28	[0,0.28]	chr14	551814	2	SS3_PROX	SS3_PROX:INTRON	PPP2R5C	ENSG00000078304.20	ENST00000694906.1:ENST00000422945.6:ENST00000554442.5:ENST00000556068.5:ENST00000556260.6:ENST00000328724.9:ENST00000554504.1:ENST00000553890.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	15	450	2	2.78004	3.32514	3.87024	2.39817e-5	1.33546e-5	0.00383194	0.00288846
chr20	31742140	31742240	7253688	0	+	0.39	(0.378,0.408]	chr20	736726	2	SS3_PROX	SS3_PROX:INTRON	TPX2	ENSG00000088325.16	ENST00000340513.4:ENST00000300403.11	protein_coding	protein_coding	protein_coding	protein_coding	2	38	2	2.23831	3.325	4.41169	0.0199606	0.0179575	0.114265	0.109608
chr17	80910963	80911062	6688476	0	+	0.535354	(0.515,0.57]	chr17	653534	12	INTRON	INTRON	RPTOR	ENSG00000141564.15	ENST00000306801.8:ENST00000544334.6:ENST00000575542.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	27	2	2.60899	3.3249250000000004	4.04086	0.0232669	0.0197045	0.120063	0.118148
chr2	216163147	216163247	1014897	0	+	0.54	(0.515,0.57]	chr2	108025	7	INTRON	INTRON	XRCC5	ENSG00000079246.16	ENST00000392133.7:ENST00000392132.7:ENST00000460284.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	27	2	2.60899	3.3249250000000004	4.04086	0.0232669	0.0197045	0.120063	0.118148
chr21	39403433	39403532	7410229	0	+	0.545455	(0.515,0.57]	chr21	755183	57	INTRON	INTRON	GET1	ENSG00000182093.16	ENST00000415847.3:ENST00000623703.3:ENST00000647911.1:ENST00000649100.1:ENST00000649499.1:ENST00000650208.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	27	2	2.60899	3.3249250000000004	4.04086	0.0232669	0.0197045	0.120063	0.118148
chr22	20004371	20004471	7556702	0	-	0.52	(0.515,0.57]	chr22	772675	132	INTRON	INTRON	ARVCF	ENSG00000099889.14	ENST00000263207.8:ENST00000467828.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	27	2	2.60899	3.3249250000000004	4.04086	0.0232669	0.0197045	0.120063	0.118148
chr5	32587827	32587919	2334773	0	+	0.543478	(0.515,0.57]	chr5	225351	10	INTRON	INTRON	SUB1	ENSG00000113387.12	ENST00000506237.5:ENST00000512913.5:ENST00000513013.5:ENST00000265073.9:ENST00000511615.5:ENST00000515355.5:ENST00000502897.5:ENST00000510442.1:ENST00000504789.5:ENST00000511988.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	27	2	2.60899	3.3249250000000004	4.04086	0.0232669	0.0197045	0.120063	0.118148
chr8	25492085	25492185	3715913	0	+	0.55	(0.515,0.57]	chr8	345325	30	INTRON	INTRON	CDCA2	ENSG00000184661.14	ENST00000380665.3:ENST00000330560.8:ENST00000521098.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	27	2	2.60899	3.3249250000000004	4.04086	0.0232669	0.0197045	0.120063	0.118148
chr1	235128094	235128194	661832	0	-	0.56	(0.515,0.57]	chr1	78342	1	SS5_PROX	SS5_PROX:INTRON	TOMM20	ENSG00000173726.11	ENST00000366607.5	protein_coding	protein_coding	protein_coding	protein_coding	18	340	2	2.65123	3.324865	3.9985	6.42757e-6	2.00742e-8	0.00178626	4.61618e-5
chr7	152059403	152059503	3449848	0	+	0.34	(0.32,0.35]	chr7	322435	313	INTRON	INTRON	GALNT11	ENSG00000178234.13	ENST00000430044.7:ENST00000482812.1:ENST00000431668.1:ENST00000446096.5:ENST00000447778.5:ENST00000423337.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	40	2	1.88468	3.324845	4.76501	0.0515071	0.0114287	0.176696	0.0886611
chr10	11595630	11595730	4555908	0	-	0.3	(0.28,0.32]	chr10	420461	219	INTRON	INTRON	USP6NL	ENSG00000148429.15	ENST00000609104.6:ENST00000606752.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	195	2	2.21468	3.32482	4.43496	9.69106e-4	3.25885e-5	0.0286715	0.00481614
chr1	180000473	180000573	267902	0	+	0.39	(0.378,0.408]	chr1	31331	29	INTRON	INTRON	CEP350	ENSG00000135837.16	ENST00000367607.8	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	2.2259	3.324695	4.42349	0.0662381	0.00992961	0.181924	0.0877296
chr15	41336824	41336923	6004810	0	+	0.393939	(0.378,0.408]	chr15	571290	34	INTRON	INTRON	NUSAP1	ENSG00000137804.14	ENST00000668273.1:ENST00000260359.10:ENST00000558123.5:ENST00000559046.5:ENST00000414849.6:ENST00000450592.6:ENST00000559596.6:ENST00000558582.5:ENST00000560747.5:ENST00000559659.1:ENST00000560177.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	30	2	2.2259	3.324695	4.42349	0.0662381	0.00992961	0.181924	0.0877296
chr16	70556597	70556691	6385487	0	+	0.404255	(0.378,0.408]	chr16	613952	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SF3B3	ENSG00000189091.13	ENST00000302516.10:ENST00000567250.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	30	2	2.2259	3.324695	4.42349	0.0662381	0.00992961	0.181924	0.0877296
chr2	105407353	105407452	1200999	0	-	0.40404	(0.378,0.408]	chr2	128358	78	INTRON	INTRON	FHL2	ENSG00000115641.19	ENST00000393352.7:ENST00000607522.1	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	2.2259	3.324695	4.42349	0.0662381	0.00992961	0.181924	0.0877296
chr7	111465948	111466048	3623146	0	-	0.4	(0.378,0.408]	chr7	337108	732	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000452895.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	2.2259	3.324695	4.42349	0.0662381	0.00992961	0.181924	0.0877296
chrX	136970935	136971034	7728087	0	+	0.40404	(0.378,0.408]	chrX	790798	71	INTRON	INTRON	TM9SF5P	ENSG00000234062.9	ENST00000650669.2:ENST00000687469.1:ENST00000431464.6:ENST00000685550.1:ENST00000685929.1:ENST00000424306.5:ENST00000687978.1:ENST00000688713.1:ENST00000693626.1:ENST00000686432.1:ENST00000693698.1:ENST00000426943.4	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	1	30	2	2.2259	3.324695	4.42349	0.0662381	0.00992961	0.181924	0.0877296
chr4	98379961	98380061	2002050	0	+	0.34	(0.32,0.35]	chr4	199716	4	INTRON	INTRON	RAP1GDS1	ENSG00000138698.15	ENST00000408927.8:ENST00000509011.5:ENST00000380158.8:ENST00000264572.11:ENST00000505378.5:ENST00000508213.5:ENST00000512857.5:ENST00000514122.5:ENST00000453712.6:ENST00000511212.5:ENST00000510870.5:ENST00000507303.5:ENST00000408900.7:ENST00000339360.9:ENST00000503745.1:ENST00000509501.5:ENST00000514139.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	33	2	2.37794	3.324535	4.27113	0.0498601	0.0199982	0.156383	0.120668
chr7	10761888	10761988	3484399	0	-	0.34	(0.32,0.35]	chr7	325772	2000	INTRON	INTRON	MGC4859	ENSG00000283117.1	ENST00000634803.1	lncRNA	lncRNA	lncRNA	lncRNA	1	33	2	2.37794	3.324535	4.27113	0.0498601	0.0199982	0.156383	0.120668
chr12	122086864	122086964	5239943	0	+	0.59	(0.57,1]	chr12	497496	72	INTRON	INTRON	MLXIP	ENSG00000175727.14	ENST00000319080.12	protein_coding	protein_coding	protein_coding	protein_coding	4	34	2	1.87172	3.32451	4.7773	0.0152293	5.07088e-4	0.0996307	0.0202328
chr2	175092042	175092131	1271560	0	-	0.213483	[0,0.28]	chr2	134393	1	SS5_PROX	SS5_PROX:INTRON	ATF2	ENSG00000115966.18	ENST00000345739.9:ENST00000426833.7:ENST00000264110.7:ENST00000409437.5:ENST00000409635.5:ENST00000435004.6:ENST00000428760.5:ENST00000392544.5:ENST00000417080.5:ENST00000456655.5:ENST00000421438.5:ENST00000429579.5:ENST00000415955.5:ENST00000409499.5:ENST00000478905.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	58	2	1.95669	3.3243	4.69191	0.0269474	0.0237518	0.129075	0.123442
chr11	43395363	43395429	4776917	0	+	0.484848	(0.476,0.515]	chr11	441713	1	EXON_LNCRNA	EXON_LNCRNA:INTRON	TTC17:ENSG00000254577	ENSG00000052841.15:ENSG00000254577.1	ENST00000039989.9:ENST00000299240.10:ENST00000394183.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	4	109	2	2.93859	3.32428	3.70997	0.00143107	1.75462e-5	0.0340925	0.00318885
chr21	46546304	46546359	7423401	0	+	0.527273	(0.515,0.57]	chr21	757075	1	SS5_PROX	SS5_PROX:INTRON	DIP2A	ENSG00000160305.18	ENST00000417564.3:ENST00000651436.1:ENST00000400274.5:ENST00000457905.7:ENST00000466639.5:ENST00000435722.7:ENST00000480553.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	25	2	2.56306	3.32422	4.08538	0.0253843	0.0247751	0.131869	0.12011
chr3	43412722	43412822	1673340	0	-	0.53	(0.515,0.57]	chr3	170966	395	INTRON	INTRON	ANO10	ENSG00000160746.13	ENST00000292246.8:ENST00000350459.8:ENST00000396091.7:ENST00000414522.6:ENST00000451430.6:ENST00000448045.1	protein_coding	protein_coding	protein_coding	protein_coding	1	25	2	2.56306	3.32422	4.08538	0.0253843	0.0247751	0.131869	0.12011
chr4	173259738	173259838	2081834	0	+	0.53	(0.515,0.57]	chr4	205702	109	INTRON	INTRON	GALNT7	ENSG00000109586.12	ENST00000265000.9:ENST00000512285.5	protein_coding	protein_coding	protein_coding	protein_coding	1	25	2	2.56306	3.32422	4.08538	0.0253843	0.0247751	0.131869	0.12011
chr7	140037314	140037414	3658992	0	-	0.57	(0.515,0.57]	chr7	339591	2	SS5_PROX	SS5_PROX:INTRON	PARP12	ENSG00000059378.13	ENST00000263549.8:ENST00000473341.5:ENST00000488726.5:ENST00000489809.5:ENST00000491598.5:ENST00000470515.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	25	2	2.56306	3.32422	4.08538	0.0253843	0.0247751	0.131869	0.12011
chr12	57394248	57394348	5338890	0	-	0.53	(0.515,0.57]	chr12	510710	529	INTRON	INTRON	R3HDM2	ENSG00000179912.21	ENST00000402412.6:ENST00000347140.7:ENST00000634871.1:ENST00000448732.1	protein_coding	protein_coding	protein_coding	protein_coding	2	55	2	2.98677	3.32414	3.66151	0.00632549	4.49566e-4	0.0722266	0.0196044
chr7	99398513	99398612	3583216	0	-	0.484848	(0.476,0.515]	chr7	333733	1	INTRON	INTRON	PDAP1	ENSG00000106244.13	ENST00000350498.8:ENST00000426447.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	97	2	2.50488	3.324035	4.14319	0.00285353	3.39012e-5	0.0474836	0.0046443
chr2	191868363	191868463	961223	0	+	0.44	(0.408,0.44]	chr2	104333	212	INTRON	INTRON	CAVIN2-AS1	ENSG00000233766.8	ENST00000424116.7	lncRNA	lncRNA	lncRNA	lncRNA	2	63	2	3.08738	3.323975	3.56057	0.00478231	9.67143e-4	0.0636201	0.0282401
chrX	9665008	9665108	7620669	0	+	0.37	(0.35,0.378]	chrX	779994	82	INTRON	INTRON	TBL1X	ENSG00000101849.18	ENST00000407597.7:ENST00000380961.5:ENST00000424279.6:ENST00000645353.2:ENST00000422314.5:ENST00000645686.1:ENST00000646640.1:ENST00000647172.1:ENST00000452824.5:ENST00000683056.1:ENST00000647060.1	protein_coding	protein_coding	protein_coding	protein_coding	3	88	2	3.2393	3.323905	3.40851	0.00205747	2.86552e-4	0.0409869	0.0150568
chr1	11908463	11908559	25918	0	+	0.489583	(0.476,0.515]	chr1	2931	3	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	ENSG00000285646	ENSG00000285646.2	ENST00000661075.1:ENST00000649268.2:ENST00000650448.1:ENST00000666735.1:ENST00000660618.1:ENST00000658167.1	lncRNA	lncRNA	lncRNA	lncRNA	2	41	2	2.21677	3.32385	4.43093	0.0207026	0.00931369	0.110999	0.0855292
chr22	21836633	21836733	7561076	0	-	0.56	(0.515,0.57]	chr22	773388	284	INTRON	INTRON	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	5	96	2	2.35275	3.323785	4.29482	0.00219906	9.59903e-6	0.0417893	0.00224473
chr15	44538225	44538325	6015397	0	+	0.31	(0.28,0.32]	chr15	573008	4	INTRON	INTRON	EIF3J	ENSG00000104131.13	ENST00000424492.7:ENST00000261868.10:ENST00000535391.5	protein_coding	protein_coding	protein_coding	protein_coding	3	57	2	1.56134	3.32378	5.08622	0.0740624	0.00227525	0.191153	0.0437013
chr22	17889430	17889530	7549304	0	-	0.34	(0.32,0.35]	chr22	771687	2	SS3_PROX	SS3_PROX:INTRON	MICAL3	ENSG00000243156.9	ENST00000441493.7:ENST00000672019.1:ENST00000400561.6:ENST00000495076.5:ENST00000414725.6:ENST00000383094.7:ENST00000461307.5:ENST00000585038.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	49	2	1.88255	3.32378	4.76501	0.0269187	0.0114287	0.135288	0.0886611
chr11	96277590	96277690	5023712	0	-	0.52	(0.515,0.57]	chr11	473809	1837	INTRON	INTRON	MAML2	ENSG00000184384.14	ENST00000524717.6	protein_coding	protein_coding	protein_coding	protein_coding	1	25	2	2.23241	3.323695	4.41498	0.0581268	0.0106866	0.188651	0.0861859
chr14	105454701	105454801	5831004	0	+	0.53	(0.515,0.57]	chr14	553605	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	MTA1	ENSG00000182979.18	ENST00000435036.6:ENST00000331320.12:ENST00000406191.5:ENST00000405646.5:ENST00000438610.5:ENST00000481012.5:ENST00000424723.5:ENST00000494026.1:ENST00000498644.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	25	2	2.23241	3.323695	4.41498	0.0581268	0.0106866	0.188651	0.0861859
chr15	41360541	41360640	6005058	0	+	0.525253	(0.515,0.57]	chr15	571331	19	INTRON	INTRON	NUSAP1	ENSG00000137804.14	ENST00000668273.1:ENST00000260359.10:ENST00000558123.5:ENST00000414849.6:ENST00000450592.6:ENST00000559596.6:ENST00000560747.5:ENST00000560177.5:ENST00000557840.5:ENST00000560898.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	25	2	2.23241	3.323695	4.41498	0.0581268	0.0106866	0.188651	0.0861859
chr16	75411324	75411424	6529079	0	-	0.55	(0.515,0.57]	chr16	632337	1	SS5_PROX	SS5_PROX:INTRON	CFDP1	ENSG00000153774.9	ENST00000283882.4:ENST00000566901.5:ENST00000565646.5:ENST00000564286.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	25	2	2.23241	3.323695	4.41498	0.0581268	0.0106866	0.188651	0.0861859
chr17	49734416	49734516	6793858	0	-	0.52	(0.515,0.57]	chr17	670424	13	INTRON	INTRON	FAM117A	ENSG00000121104.8	ENST00000240364.7:ENST00000513602.5:ENST00000503855.5:ENST00000514018.5:ENST00000505159.5:ENST00000506156.1:ENST00000515240.5:ENST00000509347.5:ENST00000503720.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	25	2	2.23241	3.323695	4.41498	0.0581268	0.0106866	0.188651	0.0861859
chr17	81568515	81568575	6848900	0	-	0.566667	(0.515,0.57]	chr17	678145	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NPLOC4	ENSG00000182446.14	ENST00000331134.11:ENST00000573519.5:ENST00000571714.5:ENST00000572824.1:ENST00000573212.5:ENST00000576713.6:ENST00000374747.9:ENST00000574897.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	25	2	2.23241	3.323695	4.41498	0.0581268	0.0106866	0.188651	0.0861859
chr2	276090	276187	685556	0	+	0.56701	(0.515,0.57]	chr2	80430	5	INTRON	INTRON	ACP1	ENSG00000143727.16	ENST00000272067.10:ENST00000413140.5:ENST00000442386.5:ENST00000272065.10:ENST00000453390.5:ENST00000484464.5:ENST00000463831.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	25	2	2.23241	3.323695	4.41498	0.0581268	0.0106866	0.188651	0.0861859
chr3	49296480	49296579	1693054	0	-	0.555556	(0.515,0.57]	chr3	173572	15	INTRON	INTRON	USP4	ENSG00000114316.13	ENST00000265560.9:ENST00000351842.8:ENST00000485450.5:ENST00000431357.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	25	2	2.23241	3.323695	4.41498	0.0581268	0.0106866	0.188651	0.0861859
chr4	73218378	73218478	2160422	0	-	0.54	(0.515,0.57]	chr4	212794	405	INTRON	INTRON	ANKRD17	ENSG00000132466.20	ENST00000358602.9:ENST00000558247.5:ENST00000330838.10:ENST00000509867.6:ENST00000561029.1:ENST00000559367.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	25	2	2.23241	3.323695	4.41498	0.0581268	0.0106866	0.188651	0.0861859
chr4	144132354	144132452	2251997	0	-	0.520408	(0.515,0.57]	chr4	220052	40	INTRON	INTRON	GYPA	ENSG00000170180.22	ENST00000641688.3:ENST00000360771.8:ENST00000642295.1:ENST00000324022.14:ENST00000646447.1:ENST00000535709.6:ENST00000508337.1:ENST00000643254.1:ENST00000643148.1:ENST00000642738.1:ENST00000642713.1:ENST00000512064.5:ENST00000512789.5:ENST00000504786.5:ENST00000503627.2:ENST00000509346.5:ENST00000514603.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	25	2	2.23241	3.323695	4.41498	0.0581268	0.0106866	0.188651	0.0861859
chr7	107142838	107142937	3378153	0	+	0.555556	(0.515,0.57]	chr7	316270	15	INTRON	INTRON	PRKAR2B	ENSG00000005249.13	ENST00000265717.5:ENST00000488792.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	25	2	2.23241	3.323695	4.41498	0.0581268	0.0106866	0.188651	0.0861859
chr17	37329579	37329672	6762273	0	-	0.462366	(0.44,0.476]	chr17	664950	2	INTRON	INTRON	ACACA	ENSG00000278540.5	ENST00000616317.5:ENST00000614428.4:ENST00000613146.4:ENST00000615229.4:ENST00000621960.1:ENST00000617548.1:ENST00000616352.4:ENST00000614789.4:ENST00000614438.1:ENST00000612007.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:non_stop_decay:nonsense_mediated_decay	6	127	2	2.46359	3.3236499999999998	4.18371	8.8879e-4	2.6221e-5	0.0274708	0.00402631
chr11	9171944	9172041	4908122	0	-	0.402062	(0.378,0.408]	chr11	460057	13	EXON_MRNA	EXON_MRNA:INTRON	DENND5A	ENSG00000184014.9	ENST00000328194.8:ENST00000681203.1:ENST00000530780.2:ENST00000680358.1:ENST00000679999.1:ENST00000679458.1:ENST00000680470.1:ENST00000680599.1:ENST00000680554.1:ENST00000679745.1:ENST00000680252.1:ENST00000681425.1:ENST00000681158.1:ENST00000679460.1:ENST00000679568.1:ENST00000679446.1:ENST00000680294.1:ENST00000680742.1:ENST00000680885.1:ENST00000680576.1:ENST00000530044.5:ENST00000527700.5:ENST00000526707.5:ENST00000681173.1:ENST00000527896.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	45	2	1.8374	3.32354	4.80968	0.0299228	0.00679828	0.142135	0.0711802
chr2	84974144	84974244	820293	0	+	0.4	(0.378,0.408]	chr2	91419	15	INTRON	INTRON	KCMF1	ENSG00000176407.18	ENST00000456682.1:ENST00000409785.9:ENST00000428691.5:ENST00000453448.1	protein_coding	protein_coding	protein_coding	protein_coding	3	45	2	1.8374	3.32354	4.80968	0.0299228	0.00679828	0.142135	0.0711802
chr17	59838690	59838788	6643721	0	+	0.306122	(0.28,0.32]	chr17	648784	4	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	VMP1	ENSG00000062716.13	ENST00000262291.9:ENST00000592619.5:ENST00000591877.1:ENST00000591782.1:ENST00000588617.1:ENST00000592790.1:ENST00000587470.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	123	2	3.01425	3.323505	3.63276	0.00114475	2.70987e-4	0.0308149	0.0146168
chr10	130167280	130167380	4536644	0	+	0.58	(0.57,1]	chr10	418809	3	SS5_PROX	SS5_PROX:INTRON	GLRX3	ENSG00000108010.12	ENST00000331244.10:ENST00000481034.1:ENST00000368644.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	25	2	1.77365	3.32349	4.87333	0.0670385	3.21412e-4	0.183051	0.0159645
chr7	72923809	72923908	3330238	0	+	0.575758	(0.57,1]	chr7	309573	37	INTRON	INTRON	POM121	ENSG00000196313.13	ENST00000627934.3:ENST00000395270.5	protein_coding	protein_coding	protein_coding	protein_coding	2	25	2	1.77365	3.32349	4.87333	0.0670385	3.21412e-4	0.183051	0.0159645
chr10	21703900	21704000	4406129	0	+	0.35	(0.32,0.35]	chr10	406537	69	INTRON	INTRON	MLLT10	ENSG00000078403.17	ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000651298.1:ENST00000377059.7:ENST00000651382.1:ENST00000438473.6:ENST00000420525.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	54	2	1.64769	3.323455	4.99922	0.0578603	0.00223907	0.167723	0.0435144
chr10	27167474	27167574	4413149	0	+	0.33	(0.32,0.35]	chr10	407008	2	SS5_PROX	SS5_PROX:INTRON	MASTL	ENSG00000120539.15	ENST00000375946.8:ENST00000375940.9:ENST00000342386.10	protein_coding	protein_coding	protein_coding	protein_coding	2	46	2	2.09005	3.3233300000000003	4.55661	0.0330483	0.00927858	0.133816	0.0855292
chr10	22320062	22320143	4406592	0	+	0.358025	(0.35,0.378]	chr10	406639	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	COMMD3:COMMD3-BMI1	ENSG00000148444.16:ENSG00000269897.5	ENST00000602574.5:ENST00000475460.6:ENST00000376836.8:ENST00000602390.5:ENST00000479958.6:ENST00000456711.5:ENST00000444869.5:ENST00000496071.5:ENST00000489125.2:ENST00000463409.6:ENST00000463688.6:ENST00000448361.5:ENST00000417470.1:ENST00000483684.1:ENST00000602395.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	31	2	2.24535	3.323315	4.40128	0.0647516	0.0120289	0.179192	0.0962115
chr12	47704972	47705068	5317221	0	-	0.364583	(0.35,0.378]	chr12	505948	18	INTRON	INTRON	RPAP3	ENSG00000005175.10	ENST00000005386.8:ENST00000432584.7:ENST00000380650.4:ENST00000551293.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	31	2	2.24535	3.323315	4.40128	0.0647516	0.0120289	0.179192	0.0962115
chr12	104304570	104304669	5210186	0	+	0.373737	(0.35,0.378]	chr12	493210	131	INTRON	INTRON	TXNRD1	ENSG00000198431.17	ENST00000525566.6:ENST00000526266.5:ENST00000503506.6:ENST00000526691.5:ENST00000531691.5:ENST00000526390.5:ENST00000531689.5:ENST00000529546.5:ENST00000529751.1:ENST00000528079.6:ENST00000526580.5:ENST00000529784.5:ENST00000524698.5:ENST00000527688.5:ENST00000527335.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	31	2	2.24535	3.323315	4.40128	0.0647516	0.0120289	0.179192	0.0962115
chr16	1354702	1354802	6274189	0	+	0.36	(0.35,0.378]	chr16	599242	20	INTRON	INTRON	GNPTG	ENSG00000090581.11	ENST00000204679.9:ENST00000526820.5:ENST00000683366.1:ENST00000527876.5:ENST00000527168.6:ENST00000534197.5:ENST00000683887.1:ENST00000529110.2:ENST00000684126.1:ENST00000529957.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	31	2	2.24535	3.323315	4.40128	0.0647516	0.0120289	0.179192	0.0962115
chr16	75056572	75056672	6389995	0	+	0.36	(0.35,0.378]	chr16	614488	93	INTRON	INTRON	ZNRF1	ENSG00000186187.12	ENST00000335325.9:ENST00000320619.10:ENST00000567962.5:ENST00000566250.5:ENST00000564320.1:ENST00000568511.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	31	2	2.24535	3.323315	4.40128	0.0647516	0.0120289	0.179192	0.0962115
chr17	57510338	57510438	6635301	0	+	0.36	(0.35,0.378]	chr17	648062	227	INTRON	INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000674961.1:ENST00000582453.5:ENST00000675656.1:ENST00000322684.7:ENST00000442934.6:ENST00000579180.2:ENST00000579205.5:ENST00000579505.5:ENST00000582772.1:ENST00000674898.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	31	2	2.24535	3.323315	4.40128	0.0647516	0.0120289	0.179192	0.0962115
chr3	48441513	48441610	1421085	0	+	0.371134	(0.35,0.378]	chr3	149351	5	INTRON	INTRON	TMA7	ENSG00000232112.3	ENST00000438607.2:ENST00000477624.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	31	2	2.24535	3.323315	4.40128	0.0647516	0.0120289	0.179192	0.0962115
chr4	82952462	82952562	2180662	0	-	0.36	(0.35,0.378]	chr4	214500	56	INTRON	INTRON	LIN54	ENSG00000189308.11	ENST00000340417.8:ENST00000510877.5:ENST00000446851.6:ENST00000442461.6:ENST00000510557.5:ENST00000508171.5:ENST00000506560.5:ENST00000505397.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	31	2	2.24535	3.323315	4.40128	0.0647516	0.0120289	0.179192	0.0962115
chr7	127708642	127708741	3402973	0	+	0.363636	(0.35,0.378]	chr7	318124	6	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8	protein_coding	protein_coding	protein_coding	protein_coding	3	47	2	1.92704	3.323285	4.71953	0.0228255	0.0103314	0.125469	0.0850389
chr7	157176615	157176714	3454321	0	+	0.363636	(0.35,0.378]	chr7	322924	12	INTRON	INTRON	UBE3C	ENSG00000009335.18	ENST00000611269.4:ENST00000348165.10:ENST00000389103.4	protein_coding	protein_coding	protein_coding	protein_coding	3	47	2	1.92704	3.323285	4.71953	0.0228255	0.0103314	0.125469	0.0850389
chr1	145993094	145993189	541074	0	-	0.421053	(0.408,0.44]	chr1	63465	8	UTR3	UTR3:EXON_MRNA	TXNIP	ENSG00000265972.6	ENST00000582401.6	protein_coding	protein_coding	protein_coding	protein_coding	45	1050	2	3.31258	3.3232749999999998	3.33397	2.32923e-7	3.63072e-9	2.51859e-4	1.81929e-5
chr18	9951752	9951852	6873730	0	+	0.33	(0.32,0.35]	chr18	680902	5	INTRON	INTRON	VAPA	ENSG00000101558.14	ENST00000400000.7:ENST00000340541.4:ENST00000584796.5:ENST00000583879.5:ENST00000583475.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	40	2	1.95271	3.323255	4.6938	0.0431213	0.0137794	0.162255	0.0949306
chr6	15505295	15505395	2825548	0	+	0.35	(0.32,0.35]	chr6	265244	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	JARID2	ENSG00000008083.14	ENST00000341776.7:ENST00000397311.4:ENST00000474854.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	40	2	1.95271	3.323255	4.6938	0.0431213	0.0137794	0.162255	0.0949306
chr15	80115570	80115669	6071601	0	+	0.313131	(0.28,0.32]	chr15	578347	1	INTRON	INTRON	ZFAND6	ENSG00000086666.19	ENST00000613266.4:ENST00000561060.5:ENST00000559157.5:ENST00000261749.11:ENST00000561012.5:ENST00000564367.5:ENST00000558494.5:ENST00000618205.4:ENST00000560470.5:ENST00000560228.5:ENST00000559835.5:ENST00000559775.5:ENST00000558688.5:ENST00000560976.5:ENST00000560392.5:ENST00000558390.5:ENST00000558272.5:ENST00000557793.1:ENST00000616533.4:ENST00000558087.5:ENST00000558997.5:ENST00000558724.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	43	2	2.13651	3.3231599999999997	4.50981	0.0275554	0.0265696	0.134088	0.123904
chr10	5428669	5428769	4384021	0	+	0.35	(0.32,0.35]	chr10	404401	1	SS3_PROX	SS3_PROX:INTRON	NET1	ENSG00000173848.19	ENST00000355029.9	protein_coding	protein_coding	protein_coding	protein_coding	2	40	2	1.81328	3.323075	4.83287	0.0615716	0.0095071	0.193423	0.0817766
chr11	117239209	117239307	4869500	0	+	0.336735	(0.32,0.35]	chr11	454496	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RNF214	ENSG00000167257.11	ENST00000300650.9:ENST00000529869.1:ENST00000531452.5:ENST00000531287.5:ENST00000530849.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	40	2	1.81328	3.323075	4.83287	0.0615716	0.0095071	0.193423	0.0817766
chr3	119962624	119962724	1794123	0	-	0.33	(0.32,0.35]	chr3	180227	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	GSK3B	ENSG00000082701.17	ENST00000264235.13:ENST00000316626.6:ENST00000678439.1:ENST00000677502.1:ENST00000676566.1:ENST00000650344.2:ENST00000678787.1:ENST00000677788.1:ENST00000678245.1:ENST00000677169.1:ENST00000678350.1:ENST00000676775.1:ENST00000677878.1:ENST00000677128.1:ENST00000678608.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	40	2	1.81328	3.323075	4.83287	0.0615716	0.0095071	0.193423	0.0817766
chr7	138527433	138527531	3435318	0	+	0.336735	(0.32,0.35]	chr7	319985	17	INTRON	INTRON	TRIM24	ENSG00000122779.18	ENST00000343526.9:ENST00000415680.6:ENST00000497516.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	40	2	1.81328	3.323075	4.83287	0.0615716	0.0095071	0.193423	0.0817766
chr15	27161376	27161476	5984057	0	+	0.52	(0.515,0.57]	chr15	569164	1342	INTRON	INTRON	GABRG3	ENSG00000182256.13	ENST00000615808.5:ENST00000555083.5	protein_coding	protein_coding	protein_coding	protein_coding	3	71	2	2.73258	3.323005	3.91343	0.00260192	1.28574e-4	0.0470772	0.0103138
chr12	110289537	110289636	5226181	0	+	0.373737	(0.35,0.378]	chr12	495234	64	INTRON	INTRON	ATP2A2	ENSG00000174437.18	ENST00000552636.2:ENST00000308664.10:ENST00000539276.7:ENST00000377685.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	13	353	2	3.13149	3.3229249999999997	3.51436	3.25367e-5	1.18706e-7	0.00481261	1.5462e-4
chr10	46009968	46010051	4608724	0	-	0.493976	(0.476,0.515]	chr10	424534	4	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NCOA4	ENSG00000266412.6	ENST00000581486.6:ENST00000585132.5:ENST00000585056.5:ENST00000583565.5:ENST00000580070.5:ENST00000578454.5:ENST00000579039.2	protein_coding	protein_coding	protein_coding	protein_coding	3	84	2	3.15202	3.322915	3.49381	0.00455841	6.39656e-5	0.0595107	0.00661396
chr1	36055944	36056044	72420	0	+	0.39	(0.378,0.408]	chr1	9249	3	UTR3	UTR3:EXON_MRNA	AGO3	ENSG00000126070.20	ENST00000634486.1:ENST00000373191.9:ENST00000246314.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	57	2	1.36527	3.3228	5.28033	0.0587392	0.00143651	0.189982	0.0340925
chr1	241849616	241849716	344383	0	+	0.27	[0,0.28]	chr1	40082	4	SS5_PROX	SS5_PROX:INTRON	EXO1	ENSG00000174371.17	ENST00000519225.5:ENST00000366548.8:ENST00000423131.5:ENST00000523590.5:ENST00000348581.9:ENST00000518483.5:ENST00000437497.5:ENST00000450748.1:ENST00000493702.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	140	2	2.99789	3.3227700000000002	3.64765	0.00144832	3.89719e-4	0.034341000000000003	0.0177751
chr6	170540519	170540618	3267548	0	-	0.282828	(0.28,0.32]	chr6	303367	28	INTRON	INTRON	PSMB1	ENSG00000008018.9	ENST00000262193.7:ENST00000462957.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	76	2	2.96187	3.322705	3.68354	0.0114995	5.5135e-4	0.0889104	0.0213455
chr1	21777461	21777561	396813	0	-	0.44	(0.408,0.44]	chr1	47345	193	INTRON	INTRON	USP48	ENSG00000090686.16	ENST00000400301.5:ENST00000308271.14:ENST00000529637.5:ENST00000421625.6:ENST00000527823.5:ENST00000532737.1:ENST00000489108.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	51	2	1.7519	3.322585	4.89327	0.0239555	0.00458906	0.129259	0.0595107
chr1	154586941	154587032	558956	0	-	0.296703	(0.28,0.32]	chr1	66427	1	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	ADAR	ENSG00000160710.18	ENST00000681056.1:ENST00000680270.1:ENST00000679375.1:ENST00000679899.1:ENST00000681901.1:ENST00000648714.2:ENST00000681235.1:ENST00000647682.2:ENST00000368474.9:ENST00000680305.1:ENST00000368471.8:ENST00000648231.2:ENST00000649022.2:ENST00000681786.1:ENST00000679465.1:ENST00000679805.1:ENST00000649408.2:ENST00000681429.1:ENST00000492630.2:ENST00000649042.1:ENST00000649724.1:ENST00000648311.1:ENST00000649749.1:ENST00000649021.1:ENST00000529168.2:ENST00000681683.1:ENST00000534279.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	76	2	3.30893	3.322445	3.33596	0.00342993	0.00260504	0.0517761	0.0470772
chr13	112554484	112554583	5651376	0	-	0.474747	(0.44,0.476]	chr13	538500	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TUBGCP3	ENSG00000126216.15	ENST00000261965.8:ENST00000649778.1:ENST00000375669.7:ENST00000464139.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	61	2	1.29261	3.32244	5.35227	0.0583425	8.47974e-4	0.189184	0.0267232
chr1	19234629	19234718	387048	0	-	0.47191	(0.44,0.476]	chr1	46199	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	EMC1	ENSG00000127463.16	ENST00000477853.6:ENST00000688219.1:ENST00000690732.1:ENST00000690451.1:ENST00000688667.1:ENST00000685099.1:ENST00000685594.1:ENST00000690823.1:ENST00000692207.1:ENST00000688332.1:ENST00000375199.7:ENST00000375208.7:ENST00000486405.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	29	2	2.20949	3.3223700000000003	4.43525	0.0672585	0.00897296	0.183051	0.0849778
chr12	93476453	93476553	5189342	0	+	0.45	(0.44,0.476]	chr12	490835	1	SS3_PROX	SS3_PROX:INTRON	MRPL42	ENSG00000198015.14	ENST00000549982.6:ENST00000552217.6:ENST00000393128.8:ENST00000552326.5:ENST00000358678.7:ENST00000547098.5:ENST00000551396.5:ENST00000549561.6:ENST00000548545.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	29	2	2.20949	3.3223700000000003	4.43525	0.0672585	0.00897296	0.183051	0.0849778
chr15	64561642	64561742	6045100	0	+	0.46	(0.44,0.476]	chr15	575696	587	INTRON	INTRON	ZNF609	ENSG00000180357.10	ENST00000326648.5:ENST00000558680.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	29	2	2.20949	3.3223700000000003	4.43525	0.0672585	0.00897296	0.183051	0.0849778
chr2	39089456	39089556	1102022	0	-	0.45	(0.44,0.476]	chr2	118302	209	INTRON	INTRON	SOS1	ENSG00000115904.15	ENST00000692089.1:ENST00000402219.8:ENST00000690876.1:ENST00000395038.6:ENST00000691229.1:ENST00000689668.1:ENST00000690679.1:ENST00000461545.2:ENST00000451331.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	29	2	2.20949	3.3223700000000003	4.43525	0.0672585	0.00897296	0.183051	0.0849778
chr4	48261052	48261152	2136618	0	-	0.45	(0.44,0.476]	chr4	210612	320	INTRON	INTRON	TEC	ENSG00000135605.13	ENST00000381501.8	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	2.20949	3.3223700000000003	4.43525	0.0672585	0.00897296	0.183051	0.0849778
chr6	35466723	35466818	2853010	0	+	0.442105	(0.44,0.476]	chr6	269588	5	UTR3	UTR3:EXON_MRNA	FANCE	ENSG00000112039.6	ENST00000229769.3:ENST00000648059.1:ENST00000696265.1:ENST00000696264.1:ENST00000696266.1:ENST00000696267.1:ENST00000696269.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	29	2	2.20949	3.3223700000000003	4.43525	0.0672585	0.00897296	0.183051	0.0849778
chr6	89770167	89770266	3161526	0	-	0.444444	(0.44,0.476]	chr6	294808	73	INTRON	INTRON	MDN1	ENSG00000112159.12	ENST00000369393.8:ENST00000629399.2:ENST00000439638.1	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	2.20949	3.3223700000000003	4.43525	0.0672585	0.00897296	0.183051	0.0849778
chr6	149679474	149679574	3246346	0	-	0.47	(0.44,0.476]	chr6	301624	2	SS5_PROX	SS5_PROX:INTRON	LATS1	ENSG00000131023.13	ENST00000543571.6:ENST00000253339.9:ENST00000441107.5:ENST00000542747.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	29	2	2.20949	3.3223700000000003	4.43525	0.0672585	0.00897296	0.183051	0.0849778
chr1	6186916	6187016	366071	0	-	0.48	(0.476,0.515]	chr1	43017	1	SS3_PROX	SS3_PROX:INTRON	RPL22	ENSG00000116251.11	ENST00000234875.9:ENST00000480661.1:ENST00000497965.5:ENST00000471204.5:ENST00000465387.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	62	2	3.07422	3.32231	3.5704	0.00506023	8.75056e-4	0.0646039	0.0270926
chr1	10054657	10054757	19343	0	+	0.47	(0.44,0.476]	chr1	1838	206	INTRON	INTRON	UBE4B	ENSG00000130939.20	ENST00000672724.1:ENST00000253251.12:ENST00000343090.11:ENST00000377153.5	protein_coding	protein_coding	protein_coding	protein_coding	2	37	2	2.21079	3.32228	4.43377	0.0194581	0.0162803	0.119831	0.101453
chr13	45361336	45361435	5480145	0	+	0.464646	(0.44,0.476]	chr13	525028	7	INTRON	INTRON	TPT1-AS1	ENSG00000170919.16	ENST00000517509.5:ENST00000658870.1:ENST00000653307.1:ENST00000661180.1:ENST00000655984.1:ENST00000654229.1:ENST00000519454.6:ENST00000412946.6:ENST00000665586.1:ENST00000520590.5:ENST00000521336.6:ENST00000655666.1:ENST00000669281.1:ENST00000520622.6:ENST00000657761.1:ENST00000668209.1:ENST00000659577.1:ENST00000523506.6:ENST00000661291.1:ENST00000655385.1:ENST00000652823.1:ENST00000524062.5:ENST00000655124.1:ENST00000662212.1:ENST00000522859.5:ENST00000664881.1:ENST00000669627.1:ENST00000520924.5:ENST00000521507.5:ENST00000523445.5:ENST00000520310.6:ENST00000667948.1:ENST00000668256.1:ENST00000654626.1:ENST00000660680.1:ENST00000665079.1:ENST00000662614.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	2	37	2	2.21079	3.32228	4.43377	0.0194581	0.0162803	0.119831	0.101453
chr12	132791046	132791115	5449824	0	-	0.15942	[0,0.28]	chr12	522036	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GOLGA3	ENSG00000090615.16	ENST00000204726.9:ENST00000450791.8:ENST00000693666.1:ENST00000688114.1:ENST00000687190.1:ENST00000690511.1:ENST00000685283.1:ENST00000691696.1:ENST00000691636.1:ENST00000690897.1:ENST00000690465.1:ENST00000456883.7:ENST00000692253.1:ENST00000687502.1:ENST00000688772.1:ENST00000687479.1:ENST00000690709.1:ENST00000545875.4:ENST00000688251.1:ENST00000690573.1:ENST00000685195.1:ENST00000686425.1:ENST00000693437.1:ENST00000692831.1:ENST00000688068.1:ENST00000692951.1:ENST00000689441.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	60	2	2.09841	3.322255	4.5461	0.0365918	0.0151026	0.138959	0.108435
chr17	60389781	60389881	6805852	0	-	0.53	(0.515,0.57]	chr17	672366	438	INTRON	INTRON	USP32	ENSG00000170832.13	ENST00000300896.9:ENST00000590133.5:ENST00000589335.5:ENST00000393003.7:ENST00000588898.1:ENST00000589761.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	40	2	1.60221	3.3222300000000002	5.04225	0.0581855	0.00131841	0.188704	0.0331539
chr18	12409172	12409267	6875154	0	+	0.515789	(0.515,0.57]	chr18	681132	8	INTRON	INTRON	PRELID3A	ENSG00000141391.14	ENST00000336990.8:ENST00000590956.5:ENST00000440960.6:ENST00000588729.5:ENST00000589565.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	40	2	1.60221	3.3222300000000002	5.04225	0.0581855	0.00131841	0.188704	0.0331539
chr1	220015734	220015834	638872	0	-	0.37	(0.35,0.378]	chr1	75264	43	INTRON	INTRON	EPRS1	ENSG00000136628.18	ENST00000366923.8:ENST00000609181.5:ENST00000477030.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	41	2	2.44701	3.3220549999999998	4.1971	0.0367539	0.00900997	0.138959	0.0851009
chr12	100275167	100275267	5200593	0	+	0.36	(0.35,0.378]	chr12	492117	70	INTRON	INTRON	SCYL2	ENSG00000136021.19	ENST00000549687.5:ENST00000360820.7:ENST00000548392.5:ENST00000635101.1:ENST00000550067.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	67	2	2.83709	3.32205	3.80701	0.01435	2.34133e-4	0.0966737	0.0135358
chr20	50512589	50512689	7285936	0	+	0.38	(0.378,0.408]	chr20	741241	16	INTRON	INTRON	PTPN1	ENSG00000196396.10	ENST00000541713.5:ENST00000371621.5	protein_coding	protein_coding	protein_coding	protein_coding	3	49	2	1.53052	3.321835	5.11315	0.0744544	9.26795e-4	0.192012	0.0278442
chr4	126507028	126507128	2235779	0	-	0.26	[0,0.28]	chr4	219023	415	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	3	56	2	1.75741	3.3218300000000003	4.88625	0.0424454	0.0173315	0.161763	0.104099
chr13	46177622	46177722	5586753	0	-	0.51	(0.476,0.515]	chr13	533977	80	INTRON	INTRON	LCP1	ENSG00000136167.15	ENST00000398576.6:ENST00000323076.7:ENST00000442275.1:ENST00000460190.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	39	2	1.86492	3.3217399999999997	4.77856	0.0550347	0.00305743	0.165463	0.0509893
chr17	82817528	82817628	6694869	0	+	0.49	(0.476,0.515]	chr17	654903	22	INTRON	INTRON	TBCD	ENSG00000141556.22	ENST00000682479.1:ENST00000682722.1:ENST00000684464.1:ENST00000684544.1:ENST00000681983.1:ENST00000684361.1:ENST00000683184.1:ENST00000683282.1:ENST00000684408.1:ENST00000355528.9:ENST00000683444.1:ENST00000684776.1:ENST00000683041.1:ENST00000684760.1:ENST00000684349.1:ENST00000682213.1:ENST00000683009.1:ENST00000682921.1:ENST00000539345.6:ENST00000684000.1:ENST00000684188.1:ENST00000684429.1:ENST00000682610.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	39	2	1.86492	3.3217399999999997	4.77856	0.0550347	0.00305743	0.165463	0.0509893
chr22	49465002	49465102	7600729	0	-	0.5	(0.476,0.515]	chr22	778566	234	INTRON	INTRON	MIR3667HG	ENSG00000188511.13	ENST00000414287.5:ENST00000416411.1	lncRNA	lncRNA	lncRNA	lncRNA	2	39	2	1.86492	3.3217399999999997	4.77856	0.0550347	0.00305743	0.165463	0.0509893
chr8	129855310	129855410	4062302	0	-	0.48	(0.476,0.515]	chr8	369761	3	SS5_PROX	SS5_PROX:INTRON	CYRIB	ENSG00000153310.21	ENST00000694912.1:ENST00000519824.6:ENST00000523288.5:ENST00000519110.5:ENST00000401979.6:ENST00000523509.5:ENST00000522746.5:ENST00000517654.5:ENST00000522250.5:ENST00000519540.5:ENST00000522941.5:ENST00000517801.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	39	2	1.86492	3.3217399999999997	4.77856	0.0550347	0.00305743	0.165463	0.0509893
chr4	2350459	2350558	2099047	0	-	0.313131	(0.28,0.32]	chr4	207724	71	INTRON	INTRON	ZFYVE28	ENSG00000159733.14	ENST00000290974.7:ENST00000511071.5:ENST00000515312.5:ENST00000515169.5:ENST00000509171.5:ENST00000503000.1:ENST00000508184.5:ENST00000504743.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	36	2	2.51488	3.321475	4.12807	0.0380957	0.0338135	0.146709	0.141678
chr16	81446839	81446939	6405017	0	+	0.54	(0.515,0.57]	chr16	615026	9	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8	protein_coding	protein_coding	protein_coding	protein_coding	9	171	2	2.73597	3.3213749999999997	3.90678	4.65474e-5	3.38642e-6	0.00592028	0.00120054
chr16	23509716	23509816	6464580	0	-	0.34	(0.32,0.35]	chr16	623900	136	INTRON	INTRON	GGA2	ENSG00000103365.15	ENST00000309859.8:ENST00000567468.5:ENST00000570111.5:ENST00000568799.1:ENST00000563494.5:ENST00000569300.5:ENST00000569189.2:ENST00000563047.1:ENST00000562944.5:ENST00000562117.1:ENST00000566547.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	14	407	2	3.11643	3.32136	3.52629	1.64369e-5	2.79688e-7	0.00324999	2.62608e-4
chr12	93395142	93395219	5189115	0	+	0.480519	(0.476,0.515]	chr12	490801	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NUDT4	ENSG00000173598.14	ENST00000337179.9:ENST00000415493.7:ENST00000549992.5:ENST00000550056.5:ENST00000547014.5:ENST00000548662.5:ENST00000546925.1	protein_coding	protein_coding	protein_coding	protein_coding	3	44	2	1.80284	3.32123	4.83962	0.033161	0.00480934	0.145899	0.0602209
chr2	175957179	175957279	1272747	0	-	0.49	(0.476,0.515]	chr2	134550	91	INTRON	INTRON	LNPK	ENSG00000144320.14	ENST00000272748.9:ENST00000544803.5:ENST00000409660.5	protein_coding	protein_coding	protein_coding	protein_coding	3	44	2	1.80284	3.32123	4.83962	0.033161	0.00480934	0.145899	0.0602209
chr20	50584172	50584269	7286662	0	+	0.474227	(0.44,0.476]	chr20	741290	16	UTR3	UTR3:EXON_MRNA	PTPN1	ENSG00000196396.10	ENST00000541713.5:ENST00000371621.5	protein_coding	protein_coding	protein_coding	protein_coding	5	132	2	2.90991	3.3212099999999998	3.73251	3.20441e-4	2.74071e-5	0.0159645	0.00430942
chr2	127764653	127764734	1225411	0	-	0.37037	(0.35,0.378]	chr2	130491	2	CDS	CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	WDR33	ENSG00000136709.12	ENST00000322313.9:ENST00000436787.5:ENST00000393006.5:ENST00000409658.7	protein_coding	protein_coding	protein_coding	protein_coding	5	121	2	2.42249	3.32112	4.21975	0.0016343	5.46e-5	0.0372392	0.00651589
chr1	17414017	17414117	384723	0	-	0.54	(0.515,0.57]	chr1	45458	3	SS3_PROX	SS3_PROX:INTRON	RCC2	ENSG00000179051.14	ENST00000375436.9:ENST00000375433.3	protein_coding	protein_coding	protein_coding	protein_coding	2	53	2	3.19178	3.3209600000000004	3.45014	0.00289534	0.00116948	0.0494641	0.0312127
chr11	8919566	8919652	4729401	0	+	0.44186	(0.44,0.476]	chr11	437814	2	UTR3	UTR3:EXON_MRNA	AKIP1	ENSG00000166452.12	ENST00000299576.9:ENST00000309357.8:ENST00000309377.9:ENST00000396648.6:ENST00000534147.5	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	2.5364	3.3209	4.1054	0.0309324	0.0220205	0.13151	0.123836
chr12	93485314	93485413	5189433	0	+	0.454545	(0.44,0.476]	chr12	490847	55	INTRON	INTRON	MRPL42	ENSG00000198015.14	ENST00000549982.6:ENST00000552217.6:ENST00000393128.8:ENST00000552326.5:ENST00000358678.7:ENST00000547098.5:ENST00000551396.5:ENST00000549561.6:ENST00000548545.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	30	2	2.5364	3.3209	4.1054	0.0309324	0.0220205	0.13151	0.123836
chr14	100073310	100073409	5814052	0	+	0.444444	(0.44,0.476]	chr14	551209	65	INTRON	INTRON	EVL	ENSG00000196405.13	ENST00000402714.6:ENST00000544450.6:ENST00000554460.5:ENST00000557023.1:ENST00000555706.5:ENST00000553771.5:ENST00000392920.8:ENST00000555048.5:ENST00000553875.5:ENST00000554045.5:ENST00000557637.1:ENST00000557153.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	30	2	2.5364	3.3209	4.1054	0.0309324	0.0220205	0.13151	0.123836
chr20	2960183	2960283	7223432	0	+	0.45	(0.44,0.476]	chr20	733963	41	INTRON	INTRON	PTPRA	ENSG00000132670.21	ENST00000455631.5:ENST00000399903.7:ENST00000216877.10:ENST00000431048.5:ENST00000318266.9:ENST00000430705.5:ENST00000356147.3	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	2.5364	3.3209	4.1054	0.0309324	0.0220205	0.13151	0.123836
chr4	103167047	103167147	2215283	0	-	0.27	[0,0.28]	chr4	217118	31	INTRON	INTRON	CENPE	ENSG00000138778.14	ENST00000380026.8:ENST00000265148.9	protein_coding	protein_coding	protein_coding	protein_coding	4	64	2	1.53147	3.3209	5.11033	0.0533898	0.00991388	0.179876	0.0838372
chr8	140632503	140632602	4076536	0	-	0.474747	(0.44,0.476]	chr8	370289	53	INTRON	INTRON	AGO2	ENSG00000123908.12	ENST00000220592.10:ENST00000519980.5:ENST00000523609.5:ENST00000517293.5:ENST00000518019.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	30	2	2.5364	3.3209	4.1054	0.0309324	0.0220205	0.13151	0.123836
chr19	4946534	4946604	7003251	0	+	0.3	(0.28,0.32]	chr19	694761	2	INTRON	INTRON	UHRF1	ENSG00000276043.5	ENST00000612630.4:ENST00000620565.4:ENST00000624301.3:ENST00000613817.4:ENST00000650932.1:ENST00000615884.4:ENST00000622802.4:ENST00000616255.1	protein_coding	protein_coding	protein_coding	protein_coding	2	54	2	2.40458	3.320885	4.23719	0.0264147	0.0141047	0.133676	0.0959618
chr1	150929466	150929566	223385	0	+	0.53	(0.515,0.57]	chr1	25356	1	SS3_PROX	SS3_PROX:INTRON	SETDB1	ENSG00000143379.13	ENST00000487584.6:ENST00000525956.5:ENST00000692314.1:ENST00000690229.1:ENST00000271640.9:ENST00000448029.5:ENST00000368962.6:ENST00000692827.1:ENST00000534805.5:ENST00000368969.8:ENST00000459773.1:ENST00000368963.5:ENST00000498193.5:ENST00000368964.3:ENST00000423081.1:ENST00000481219.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	34	2	2.32836	3.32081	4.31326	0.0141817	0.0126662	0.0982897	0.0959618
chr7	105372051	105372151	3603737	0	-	0.52	(0.515,0.57]	chr7	336161	651	INTRON	INTRON	SRPK2	ENSG00000135250.17	ENST00000393651.8:ENST00000482897.5:ENST00000460391.5:ENST00000462282.5:ENST00000465112.5:ENST00000482862.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	34	2	2.32836	3.32081	4.31326	0.0141817	0.0126662	0.0982897	0.0959618
chr19	46379045	46379144	7081640	0	+	0.454545	(0.44,0.476]	chr19	708540	21	INTRON	INTRON	PPP5C	ENSG00000011485.15	ENST00000012443.9:ENST00000478046.5:ENST00000391919.1:ENST00000527193.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	112	2	2.45769	3.3206999999999995	4.18371	0.00166589	2.6221e-5	0.0369207	0.00402631
chr16	66724948	66725048	6501956	0	-	0.49	(0.476,0.515]	chr16	628984	2	SS3_PROX	SS3_PROX:INTRON	DYNC1LI2	ENSG00000135720.13	ENST00000258198.7:ENST00000443351.6:ENST00000563628.6:ENST00000569320.5:ENST00000567499.5:ENST00000564559.6:ENST00000568453.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	60	2	3.29074	3.320665	3.35059	0.00272563	0.00171515	0.0467523	0.0381936
chr3	156552094	156552190	1844483	0	-	0.479167	(0.476,0.515]	chr3	185593	7	INTRON	INTRON	SSR3	ENSG00000114850.7	ENST00000265044.7:ENST00000467789.5:ENST00000476217.5:ENST00000463503.5:ENST00000496050.1:ENST00000467733.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	60	2	3.29074	3.320665	3.35059	0.00272563	0.00171515	0.0467523	0.0381936
chr10	74547889	74547989	4459747	0	+	0.54	(0.515,0.57]	chr10	411593	194	INTRON	INTRON	ADK	ENSG00000156110.15	ENST00000672429.1:ENST00000539909.6:ENST00000286621.7:ENST00000673352.1:ENST00000673310.1:ENST00000672920.1:ENST00000672394.1:ENST00000372734.5:ENST00000673027.1:ENST00000541550.6:ENST00000672604.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	35	2	1.79136	3.32036	4.84936	0.0638444	0.00146032	0.177811	0.0349875
chr2	159601409	159601509	1252384	0	-	0.52	(0.515,0.57]	chr2	132736	452	INTRON	INTRON	BAZ2B	ENSG00000123636.19	ENST00000392782.5:ENST00000392783.7:ENST00000541068.6:ENST00000437839.5:ENST00000483316.1:ENST00000552327.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	35	2	1.79136	3.32036	4.84936	0.0638444	0.00146032	0.177811	0.0349875
chr22	41895137	41895237	7526636	0	+	0.51	(0.476,0.515]	chr22	769440	2	SS5_PROX	SS5_PROX:INTRON	SREBF2	ENSG00000198911.12	ENST00000612482.4:ENST00000361204.9:ENST00000424354.5:ENST00000491541.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	58	2	1.73294	3.320275	4.90761	0.0174121	0.00386428	0.112632	0.0542786
chr4	119516623	119516721	2026981	0	+	0.520408	(0.515,0.57]	chr4	201624	33	INTRON	INTRON	SEPTIN7P14	ENSG00000245958.7	ENST00000688315.1:ENST00000688480.1:ENST00000686202.1:ENST00000692945.1:ENST00000508519.6:ENST00000685974.1:ENST00000692409.1:ENST00000692642.1:ENST00000690731.1:ENST00000685525.1:ENST00000498873.5:ENST00000510844.5:ENST00000500559.6	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	2	35	2	1.8707	3.3202700000000003	4.76984	0.0523213	0.00198034	0.160182	0.0411469
chr17	4945651	4945733	6713060	0	-	0.341463	(0.32,0.35]	chr17	657983	1	UTR3	UTR3:EXON_MRNA	PFN1	ENSG00000108518.8	ENST00000225655.6:ENST00000574872.1	protein_coding	protein_coding	protein_coding	protein_coding	5	153	2	3.00559	3.32027	3.63495	2.41032e-4	7.96407e-5	0.0136674	0.00801397
chr1	88692622	88692722	155852	0	+	0.31	(0.28,0.32]	chr1	17045	76	INTRON	INTRON	PKN2	ENSG00000065243.20	ENST00000316005.11:ENST00000370521.8:ENST00000370513.9	protein_coding	protein_coding	protein_coding	protein_coding	2	42	2	1.83771	3.32013	4.80255	0.0591725	0.0137406	0.189982	0.0949306
chr13	28281679	28281779	5462280	0	+	0.31	(0.28,0.32]	chr13	523330	3	SS5_PROX	SS5_PROX:INTRON	PAN3	ENSG00000152520.14	ENST00000380958.8:ENST00000399613.1	protein_coding	protein_coding	protein_coding	protein_coding	2	42	2	1.83771	3.32013	4.80255	0.0591725	0.0137406	0.189982	0.0949306
chr16	81000847	81000947	6530637	0	-	0.3	(0.28,0.32]	chr16	632672	2	SS5_PROX	SS5_PROX:INTRON	CMC2	ENSG00000103121.9	ENST00000219400.8:ENST00000486645.5:ENST00000570195.5:ENST00000569187.5:ENST00000570086.5:ENST00000565650.5:ENST00000567593.5:ENST00000568228.5:ENST00000565914.5:ENST00000565108.5:ENST00000565925.5:ENST00000564174.5:ENST00000565613.5:ENST00000562713.3:ENST00000562828.5:ENST00000630396.1:ENST00000565514.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	42	2	1.83771	3.32013	4.80255	0.0591725	0.0137406	0.189982	0.0949306
chr4	123095396	123095495	2037367	0	+	0.282828	(0.28,0.32]	chr4	202380	43	INTRON	INTRON	SPATA5	ENSG00000145375.9	ENST00000675612.1:ENST00000274008.5:ENST00000422835.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	42	2	1.83771	3.32013	4.80255	0.0591725	0.0137406	0.189982	0.0949306
chr8	105453462	105453562	3838596	0	+	0.3	(0.28,0.32]	chr8	354063	18	INTRON	INTRON	ZFPM2	ENSG00000169946.14	ENST00000407775.7:ENST00000520492.5:ENST00000520027.5:ENST00000524235.5:ENST00000511341.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	42	2	1.83771	3.32013	4.80255	0.0591725	0.0137406	0.189982	0.0949306
chr3	186935477	186935576	1586222	0	+	0.363636	(0.35,0.378]	chr3	164314	37	INTRON	INTRON	ST6GAL1	ENSG00000073849.16	ENST00000676786.1:ENST00000463542.1:ENST00000169298.8:ENST00000457772.6:ENST00000455441.5:ENST00000427315.5:ENST00000677292.1:ENST00000468614.1:ENST00000458216.5:ENST00000430309.5:ENST00000417392.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	53	2	1.59505	3.3200849999999997	5.04512	0.040425	0.00393262	0.161534	0.0548259
chr5	53993412	53993512	2617738	0	-	0.37	(0.35,0.378]	chr5	248835	814	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	53	2	1.59505	3.3200849999999997	5.04512	0.040425	0.00393262	0.161534	0.0548259
chr1	21140693	21140793	393268	0	-	0.31	(0.28,0.32]	chr1	46836	277	INTRON	INTRON	EIF4G3	ENSG00000075151.24	ENST00000374935.7:ENST00000602326.6:ENST00000685872.1:ENST00000686579.1:ENST00000688741.1:ENST00000400422.6:ENST00000634879.2:ENST00000693470.1:ENST00000685814.1:ENST00000356916.7:ENST00000682284.1:ENST00000438975.5:ENST00000411888.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	32	2	2.60656	3.320005	4.03345	0.0704058	0.0256827	0.184298	0.133676
chr1	92708039	92708139	507397	0	-	0.29	(0.28,0.32]	chr1	59878	29	INTRON	INTRON	EVI5	ENSG00000067208.16	ENST00000370331.5:ENST00000540033.2:ENST00000684568.2:ENST00000474806.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	32	2	2.60656	3.320005	4.03345	0.0704058	0.0256827	0.184298	0.133676
chr12	24831837	24831933	5296727	0	-	0.28125	(0.28,0.32]	chr12	503825	16	INTRON	INTRON	BCAT1	ENSG00000060982.15	ENST00000261192.12:ENST00000538118.5:ENST00000342945.9:ENST00000539282.5:ENST00000539780.5	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	2.60656	3.320005	4.03345	0.0704058	0.0256827	0.184298	0.133676
chr15	81856942	81857042	6243873	0	-	0.32	(0.28,0.32]	chr15	595867	382	INTRON	INTRON	ENSG00000259692	ENSG00000259692.6	ENST00000559428.2:ENST00000560054.6:ENST00000560097.1:ENST00000559299.2	lncRNA	lncRNA	lncRNA	lncRNA	1	32	2	2.60656	3.320005	4.03345	0.0704058	0.0256827	0.184298	0.133676
chr15	82373059	82373159	6075711	0	+	0.3	(0.28,0.32]	chr15	578727	173	INTRON	INTRON	UBE2Q2P2	ENSG00000259429.5	ENST00000618775.4	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	1	32	2	2.60656	3.320005	4.03345	0.0704058	0.0256827	0.184298	0.133676
chr17	31106964	31107064	6591253	0	+	0.29	(0.28,0.32]	chr17	641053	112	INTRON	INTRON	NF1	ENSG00000196712.20	ENST00000696138.1:ENST00000356175.7:ENST00000487476.5:ENST00000691014.1:ENST00000358273.9:ENST00000431387.8:ENST00000579081.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	32	2	2.60656	3.320005	4.03345	0.0704058	0.0256827	0.184298	0.133676
chr3	5216213	5216312	1354487	0	+	0.313131	(0.28,0.32]	chr3	142483	4	UTR3	UTR3:EXON_MRNA	EDEM1	ENSG00000134109.11	ENST00000256497.9	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	2.60656	3.320005	4.03345	0.0704058	0.0256827	0.184298	0.133676
chr7	129927543	129927643	3637718	0	-	0.23	[0,0.28]	chr7	338226	16	INTRON	INTRON	UBE2H	ENSG00000186591.13	ENST00000355621.8:ENST00000649897.1:ENST00000473814.6:ENST00000496698.5:ENST00000472396.5:ENST00000480245.5:ENST00000490974.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	57	2	1.88025	3.319945	4.75964	0.029906	0.0232081	0.142135	0.118148
chr1	26475148	26475247	50632	0	+	0.272727	[0,0.28]	chr1	6389	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	HMGN2	ENSG00000198830.11	ENST00000361427.6:ENST00000479815.5:ENST00000460563.5:ENST00000464888.5:ENST00000463817.5:ENST00000619352.4:ENST00000467700.5:ENST00000466194.1:ENST00000493418.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	341	2	2.89461	3.319935	3.74526	4.87973e-5	2.50018e-5	0.00571079	0.004128
chr16	21510332	21510432	6461460	0	-	0.6	(0.57,1]	chr16	623383	38	INTRON	INTRON	SMG1P3	ENSG00000180747.15	ENST00000522841.6:ENST00000437413.2:ENST00000435197.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	3	47	2	3.09313	3.31989	3.54665	0.00369015	2.33646e-5	0.0535094	0.00378116
chr1	26701536	26701636	51226	0	+	0.42	(0.408,0.44]	chr1	6542	36	INTRON	INTRON	ARID1A	ENSG00000117713.21	ENST00000430799.7:ENST00000324856.13:ENST00000637465.1:ENST00000457599.6	protein_coding	protein_coding	protein_coding	protein_coding	2	37	2	2.21238	3.319755	4.42713	0.0193525	0.0173083	0.119831	0.104099
chr19	9818153	9818225	7134031	0	-	0.458333	(0.44,0.476]	chr19	719007	1	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	FBXL12	ENSG00000127452.9	ENST00000589626.5:ENST00000586651.5:ENST00000247977.9:ENST00000588922.5:ENST00000585379.5:ENST00000592732.5:ENST00000589438.1:ENST00000592067.1:ENST00000590808.1:ENST00000590277.1:ENST00000586469.1:ENST00000586073.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	148	2	2.74833	3.319665	3.891	4.07917e-4	5.38584e-6	0.0185763	0.00160484
chr5	53952217	53952317	2617326	0	-	0.41	(0.408,0.44]	chr5	248835	402	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	82	2	2.92033	3.319535	3.71874	0.00162151	3.17998e-4	0.0367655	0.0159645
chr18	35333501	35333599	6961937	0	-	0.316327	(0.28,0.32]	chr18	688889	14	UTR3	UTR3:EXON_MRNA	ZNF24	ENSG00000172466.16	ENST00000399061.3:ENST00000261332.11:ENST00000589881.5	protein_coding	protein_coding	protein_coding	protein_coding	3	101	2	3.0891	3.319525	3.54995	0.00157396	7.51507e-4	0.0361918	0.0251578
chr1	162589033	162589133	238599	0	+	0.13	[0,0.28]	chr1	28733	2	SS5_PROX	SS5_PROX:INTRON	UAP1	ENSG00000117143.14	ENST00000367925.6:ENST00000367926.9	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	2.43761	3.3193349999999997	4.20106	0.0695895	0.0423864	0.184298	0.161744
chr17	31377196	31377294	6594059	0	+	0.204082	[0,0.28]	chr17	641413	32	UTR3	UTR3:EXON_MRNA:INTRON	NF1	ENSG00000196712.20	ENST00000696138.1:ENST00000356175.7:ENST00000691014.1:ENST00000358273.9:ENST00000687027.1:ENST00000693617.1:ENST00000684826.1:ENST00000471572.6:ENST00000689464.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	34	2	2.43761	3.3193349999999997	4.20106	0.0695895	0.0423864	0.184298	0.161744
chr12	98670084	98670181	5199383	0	+	0.525773	(0.515,0.57]	chr12	491938	21	INTRON	INTRON	APAF1	ENSG00000120868.14	ENST00000551964.6:ENST00000359972.6:ENST00000333991.5:ENST00000357310.5:ENST00000552268.5:ENST00000550527.5:ENST00000547045.5:ENST00000549007.1	protein_coding	protein_coding	protein_coding	protein_coding	5	51	2	1.59629	3.31927	5.04225	0.0274344	0.00131841	0.136554	0.0331539
chr2	55032718	55032818	1121232	0	-	0.54	(0.515,0.57]	chr2	120163	41	INTRON	INTRON	RTN4	ENSG00000115310.19	ENST00000404909.5:ENST00000394611.6:ENST00000317610.11:ENST00000357732.8:ENST00000337526.11:ENST00000357376.7:ENST00000405240.5:ENST00000438462.1:ENST00000427710.5	protein_coding	protein_coding	protein_coding	protein_coding	5	51	2	1.59629	3.31927	5.04225	0.0274344	0.00131841	0.136554	0.0331539
chr17	64619418	64619518	6816708	0	-	0.4	(0.378,0.408]	chr17	673955	124	INTRON	INTRON	SMURF2	ENSG00000108854.16	ENST00000262435.14:ENST00000582081.5:ENST00000578386.5:ENST00000585301.1:ENST00000578200.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	41	2	1.94681	3.3192500000000003	4.69169	0.0457723	0.00432302	0.149888	0.0599409
chr11	43680183	43680282	4778966	0	+	0.555556	(0.515,0.57]	chr11	441869	67	INTRON	INTRON	ENSG00000283341	ENSG00000283341.3	ENST00000532864.6:ENST00000529261.5	lncRNA	lncRNA	lncRNA	lncRNA	1	26	2	2.23915	3.3190749999999998	4.399	0.0596178	0.00708863	0.16883600000000001	0.0754923
chr13	41319599	41319693	5474300	0	+	0.542553	(0.515,0.57]	chr13	524441	3	INTRON	INTRON	NAA16	ENSG00000172766.19	ENST00000379406.8:ENST00000403412.7:ENST00000476980.5:ENST00000464857.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	26	2	2.23915	3.3190749999999998	4.399	0.0596178	0.00708863	0.16883600000000001	0.0754923
chr20	58393836	58393936	7289591	0	+	0.53	(0.515,0.57]	chr20	741668	31	INTRON	INTRON	VAPB	ENSG00000124164.16	ENST00000475243.6:ENST00000395802.7:ENST00000520497.1:ENST00000265619.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	26	2	2.23915	3.3190749999999998	4.399	0.0596178	0.00708863	0.16883600000000001	0.0754923
chrX	2481819	2481919	7745425	0	-	0.55	(0.515,0.57]	chrX	792966	562	INTRON	INTRON	DHRSX	ENSG00000169084.15	ENST00000334651.11:ENST00000412516.7:ENST00000444280.6:ENST00000441131.7:ENST00000478825.7:ENST00000430536.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	26	2	2.23915	3.3190749999999998	4.399	0.0596178	0.00708863	0.16883600000000001	0.0754923
chr22	22320250	22320350	7483057	0	+	0.5	(0.476,0.515]	chr22	763475	6	INTRON	INTRON	ENSG00000286129	ENSG00000286129.1	ENST00000652112.1	lncRNA	lncRNA	lncRNA	lncRNA	13	312	2	3.0287	3.3190350000000004	3.60937	3.4585e-6	9.16635e-7	0.00120947	5.9544e-4
chr2	53954772	53954872	1120416	0	-	0.41	(0.408,0.44]	chr2	120102	51	INTRON	INTRON	PSME4	ENSG00000068878.15	ENST00000404125.6:ENST00000389993.7:ENST00000481518.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	98	2	3.04238	3.31897	3.59556	8.33275e-4	1.54233e-4	0.0266389	0.0106835
chr19	38667437	38667537	7065926	0	+	0.36	(0.35,0.378]	chr19	705486	188	INTRON	INTRON	ACTN4	ENSG00000130402.13	ENST00000252699.7:ENST00000588618.5:ENST00000440400.2:ENST00000424234.7:ENST00000589528.1:ENST00000390009.7:ENST00000495553.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	48	2	2.4475	3.31886	4.19022	0.0209891	0.0106974	0.122348	0.0862205
chr5	75352402	75352502	2391003	0	+	0.47	(0.44,0.476]	chr5	230953	4	INTRON	INTRON	HMGCR	ENSG00000113161.17	ENST00000511206.5:ENST00000679456.1:ENST00000680160.1:ENST00000287936.9:ENST00000681567.1:ENST00000343975.9:ENST00000680940.1:ENST00000681271.1:ENST00000681410.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	82	2	3.26669	3.318765	3.37084	0.00305435	1.26042e-4	0.0493883	0.00959902
chr3	38170435	38170534	1398593	0	+	0.292929	(0.28,0.32]	chr3	146661	41	INTRON	INTRON	OXSR1	ENSG00000172939.9	ENST00000492714.1:ENST00000446845.5:ENST00000311806.8:ENST00000426620.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	42	2	1.90263	3.3186850000000003	4.73474	0.0503272	0.0162835	0.17488	0.101453
chrX	154708137	154708237	7914887	0	-	0.32	(0.28,0.32]	chrX	806091	77	INTRON	INTRON	GAB3	ENSG00000160219.12	ENST00000496390.5:ENST00000424127.3:ENST00000369575.7:ENST00000369568.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	42	2	1.90263	3.3186850000000003	4.73474	0.0503272	0.0162835	0.17488	0.101453
chr2	32963337	32963437	735624	0	+	0.46	(0.44,0.476]	chr2	84876	140	INTRON	INTRON	LTBP1	ENSG00000049323.16	ENST00000404816.7	protein_coding	protein_coding	protein_coding	protein_coding	4	50	2	1.49356	3.31867	5.14378	0.0537505	0.00184943	0.180803	0.0388609
chr10	113915601	113915701	4527465	0	+	0.4	(0.378,0.408]	chr10	417479	72	UTR3	UTR3:EXON_MRNA	NHLRC2	ENSG00000196865.4	ENST00000369301.3	protein_coding	protein_coding	protein_coding	protein_coding	3	84	2	2.86955	3.318645	3.76774	0.00159247	4.21442e-4	0.0367961	0.0189827
chr9	91848676	91848776	4284249	0	-	0.55	(0.515,0.57]	chr9	393909	725	INTRON	INTRON	ROR2	ENSG00000169071.15	ENST00000375715.5:ENST00000375708.4:ENST00000550066.5:ENST00000495386.5:ENST00000546883.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	111	2	3.04375	3.318645	3.59354	1.26526e-4	3.84354e-5	0.00962985	0.00528498
chr7	105362454	105362554	3603641	0	-	0.46	(0.44,0.476]	chr7	336161	555	INTRON	INTRON	SRPK2	ENSG00000135250.17	ENST00000393651.8:ENST00000482897.5:ENST00000460391.5:ENST00000462282.5:ENST00000465112.5:ENST00000482862.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	32	2	2.80275	3.318575	3.8344	0.041276	0.0146513	0.161534	0.0982604
chr7	111395812	111395912	3622444	0	-	0.32	(0.28,0.32]	chr7	337108	30	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000452895.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding	1	37	2	2.62686	3.31844	4.01002	0.0434868	0.0289217	0.162255	0.1274
chr16	74366341	74366440	6523531	0	-	0.575758	(0.57,1]	chr16	631626	51	INTRON	INTRON	PDPR2P	ENSG00000214331.8	ENST00000566802.5:ENST00000429810.2	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron	4	54	2	2.39221	3.31834	4.24447	0.00352602	7.02904e-6	0.0546236	0.00198457
chr10	89727188	89727271	4484828	0	+	0.337349	(0.32,0.35]	chr10	412775	3	INTRON	INTRON	KIF20B	ENSG00000138182.15	ENST00000371728.8:ENST00000260753.8:ENST00000478929.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	40	2	2.01768	3.3182850000000004	4.61889	0.0361337	0.0166646	0.152563	0.102621
chr2	190919515	190919614	959875	0	+	0.323232	(0.32,0.35]	chr2	104198	58	INTRON	INTRON	GLS	ENSG00000115419.13	ENST00000320717.8:ENST00000338435.8:ENST00000417154.5:ENST00000461965.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	40	2	2.01768	3.3182850000000004	4.61889	0.0361337	0.0166646	0.152563	0.102621
chr20	26153488	26153588	7252149	0	+	0.34	(0.32,0.35]	chr20	736500	169	INTRON	INTRON	ENSG00000287211	ENSG00000287211.1	ENST00000657722.1	lncRNA	lncRNA	lncRNA	lncRNA	2	40	2	2.01768	3.3182850000000004	4.61889	0.0361337	0.0166646	0.152563	0.102621
chr3	11333692	11333791	1365016	0	+	0.333333	(0.32,0.35]	chr3	143884	2	INTRON	INTRON	ATG7	ENSG00000197548.13	ENST00000693202.1:ENST00000435760.6:ENST00000685771.1:ENST00000354449.7:ENST00000354956.9:ENST00000446450.6:ENST00000424071.5:ENST00000434066.6:ENST00000478638.5:ENST00000461278.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	40	2	2.01768	3.3182850000000004	4.61889	0.0361337	0.0166646	0.152563	0.102621
chrX	73959192	73959290	7682248	0	+	0.306122	(0.28,0.32]	chrX	786628	2	INTRON	INTRON	JPX	ENSG00000225470.8	ENST00000664637.1:ENST00000639185.1:ENST00000655090.1:ENST00000640437.1:ENST00000660546.1:ENST00000667886.1:ENST00000660840.1:ENST00000657179.1:ENST00000670506.1:ENST00000657910.1:ENST00000662120.1:ENST00000671207.1:ENST00000659254.1:ENST00000656624.1:ENST00000667573.1:ENST00000660856.1:ENST00000660836.1:ENST00000668590.1:ENST00000658649.1:ENST00000414209.6:ENST00000654137.1:ENST00000670994.1:ENST00000653479.1:ENST00000602772.5:ENST00000655879.1:ENST00000657372.1:ENST00000657096.1:ENST00000602985.6:ENST00000670685.1:ENST00000670503.1:ENST00000663027.1:ENST00000654995.1:ENST00000602895.6:ENST00000654374.1:ENST00000660087.1:ENST00000665032.1:ENST00000671336.1:ENST00000671476.1:ENST00000667057.1:ENST00000670192.1:ENST00000670464.1:ENST00000665345.1:ENST00000661546.1:ENST00000662543.1:ENST00000602938.6:ENST00000664295.1:ENST00000654005.1:ENST00000669149.1:ENST00000659852.1:ENST00000656509.1:ENST00000602294.6:ENST00000667294.1:ENST00000663470.1:ENST00000602920.6:ENST00000671021.1:ENST00000659849.1:ENST00000667937.1:ENST00000661130.1:ENST00000654196.1:ENST00000655994.1:ENST00000659373.1:ENST00000662239.1:ENST00000670805.1:ENST00000656263.1:ENST00000653069.1:ENST00000657638.1:ENST00000653808.1:ENST00000653929.1:ENST00000653885.1:ENST00000659023.1:ENST00000602546.5:ENST00000659622.1:ENST00000671518.1:ENST00000670408.1	lncRNA	lncRNA	lncRNA	lncRNA	7	169	2	2.24831	3.318185	4.38806	0.00159439	4.10476e-5	0.0367961	0.00543729
chr1	100281666	100281765	172429	0	+	0.434343	(0.408,0.44]	chr1	18762	40	INTRON	INTRON	RTCA	ENSG00000137996.13	ENST00000370128.9:ENST00000260563.4	protein_coding	protein_coding	protein_coding	protein_coding	4	109	2	3.31435	3.31815	3.32195	2.54513e-4	1.71418e-4	0.0147895	0.0113605
chr1	225416123	225416220	645633	0	-	0.484536	(0.476,0.515]	chr1	76363	4	INTRON	INTRON	LBR	ENSG00000143815.15	ENST00000272163.9:ENST00000338179.6:ENST00000651341.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	107	2	3.11647	3.31798	3.51949	6.41912e-4	5.51244e-5	0.0231685	0.00608953
chr16	29598652	29598752	6471587	0	-	0.33	(0.32,0.35]	chr16	625301	38	INTRON	INTRON	ENSG00000288632	ENSG00000288632.1	ENST00000675579.1	lncRNA	lncRNA	lncRNA	lncRNA	3	48	2	1.61669	3.31793	5.01917	0.0578816	0.0055659	0.188651	0.0648867
chr2	9490618	9490713	1063807	0	-	0.378947	(0.378,0.408]	chr2	113442	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ADAM17	ENSG00000151694.14	ENST00000310823.8:ENST00000648548.1:ENST00000649227.1:ENST00000648857.1:ENST00000647979.1:ENST00000647610.1:ENST00000650116.1:ENST00000649798.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	64	2	1.57136	3.31774	5.06412	0.0233757	0.0030522	0.128037	0.0493883
chr2	67398270	67398369	801046	0	+	0.30303	(0.28,0.32]	chr2	89513	2	INTRON	INTRON	ETAA1	ENSG00000143971.9	ENST00000645739.1:ENST00000644028.1:ENST00000272342.6:ENST00000462772.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	103	2	2.77917	3.31758	3.85599	0.00285651	4.63052e-4	0.0494641	0.0198709
chr7	108493143	108493241	3614307	0	-	0.326531	(0.32,0.35]	chr7	336975	13	INTRON	INTRON	PNPLA8	ENSG00000135241.17	ENST00000257694.13:ENST00000426128.6:ENST00000453144.5:ENST00000422087.5:ENST00000436062.5:ENST00000453085.1	protein_coding	protein_coding	protein_coding	protein_coding	5	63	2	1.61591	3.31754	5.01917	0.0277247	0.0055659	0.137011	0.0648867
chr2	241758413	241758513	1056554	0	+	0.42	(0.408,0.44]	chr2	112689	20	INTRON	INTRON	D2HGDH	ENSG00000180902.18	ENST00000403782.5:ENST00000436747.5:ENST00000321264.9:ENST00000400769.6:ENST00000486953.5:ENST00000470343.5:ENST00000473126.1:ENST00000468064.5:ENST00000445308.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	62	2	3.14706	3.317495	3.48793	0.00382411	0.00130904	0.0562562	0.0331539
chr12	23231877	23231977	5285937	0	-	0.32	(0.28,0.32]	chr12	503634	489	INTRON	INTRON	ENSG00000115934	ENSG00000115934.11	ENST00000538297.1	lncRNA	lncRNA	lncRNA	lncRNA	1	31	2	2.29724	3.317445	4.33765	0.0554156	0.039714	0.18407	0.143072
chr14	54435380	54435479	5897840	0	-	0.282828	(0.28,0.32]	chr14	560127	28	INTRON	INTRON	CNIH1	ENSG00000100528.12	ENST00000216416.9:ENST00000395573.8:ENST00000557659.5:ENST00000553660.5:ENST00000557690.5:ENST00000554683.1:ENST00000556113.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	31	2	2.29724	3.317445	4.33765	0.0554156	0.039714	0.18407	0.143072
chr14	61034613	61034710	5739635	0	+	0.28866000000000003	(0.28,0.32]	chr14	544990	1	INTRON	INTRON	SLC38A6	ENSG00000139974.16	ENST00000354886.6:ENST00000525723.6:ENST00000267488.9:ENST00000491344.7:ENST00000451406.5:ENST00000527591.5:ENST00000529345.6:ENST00000524402.6:ENST00000526105.5:ENST00000533744.6:ENST00000528350.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	31	2	2.29724	3.317445	4.33765	0.0554156	0.039714	0.18407	0.143072
chr14	96867895	96867995	5811585	0	+	0.3	(0.28,0.32]	chr14	551089	31	EXON_MRNA	EXON_MRNA:INTRON	VRK1	ENSG00000100749.9	ENST00000553683.2:ENST00000680538.1:ENST00000681195.1:ENST00000681524.1:ENST00000680084.1:ENST00000679533.1:ENST00000681598.1:ENST00000679727.1:ENST00000679758.1:ENST00000679977.1:ENST00000680387.1:ENST00000680335.1:ENST00000680683.1:ENST00000681474.1:ENST00000216639.8:ENST00000681363.1:ENST00000681538.1:ENST00000680922.1:ENST00000679903.1:ENST00000681101.1:ENST00000681419.1:ENST00000679941.1:ENST00000680849.1:ENST00000679770.1:ENST00000681493.1:ENST00000681778.1:ENST00000680993.1:ENST00000681355.1:ENST00000681695.1:ENST00000681344.1:ENST00000680007.1:ENST00000679918.1:ENST00000679816.1:ENST00000680756.1:ENST00000681249.1:ENST00000680526.1:ENST00000679365.1:ENST00000680851.1:ENST00000679506.1:ENST00000679650.1:ENST00000679462.1:ENST00000680724.1:ENST00000681061.1:ENST00000681677.1:ENST00000679843.1:ENST00000555067.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	31	2	2.29724	3.317445	4.33765	0.0554156	0.039714	0.18407	0.143072
chr2	148702030	148702130	892328	0	+	0.29	(0.28,0.32]	chr2	98796	93	INTRON	INTRON	EPC2	ENSG00000135999.12	ENST00000457184.5:ENST00000258484.11:ENST00000397424.2	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	2.29724	3.317445	4.33765	0.0554156	0.039714	0.18407	0.143072
chr2	206132544	206132644	1317637	0	-	0.31	(0.28,0.32]	chr2	138108	2	SS5_PROX	SS5_PROX:INTRON	NDUFS1	ENSG00000023228.14	ENST00000233190.11:ENST00000455934.6:ENST00000423725.5:ENST00000457011.5:ENST00000440274.5:ENST00000432169.5:ENST00000449699.5:ENST00000498520.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	31	2	2.29724	3.317445	4.33765	0.0554156	0.039714	0.18407	0.143072
chr20	3917904	3917992	7227191	0	+	0.284091	(0.28,0.32]	chr20	734516	5	INTRON	INTRON	PANK2	ENSG00000125779.24	ENST00000497424.5:ENST00000316562.9:ENST00000495692.5:ENST00000610179.7:ENST00000643504.2:ENST00000336066.8:ENST00000646394.1:ENST00000621507.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	31	2	2.29724	3.317445	4.33765	0.0554156	0.039714	0.18407	0.143072
chr21	39395171	39395271	7410145	0	+	0.29	(0.28,0.32]	chr21	755178	15	INTRON	INTRON	GET1	ENSG00000182093.16	ENST00000415847.3:ENST00000647678.1:ENST00000650376.1:ENST00000649170.1:ENST00000623703.3:ENST00000647911.1:ENST00000649100.1:ENST00000649224.1:ENST00000398753.5:ENST00000649822.1:ENST00000380708.5:ENST00000466787.1:ENST00000649499.1:ENST00000650208.1:ENST00000490860.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	31	2	2.29724	3.317445	4.33765	0.0554156	0.039714	0.18407	0.143072
chr3	15669681	15669779	1622499	0	-	0.285714	(0.28,0.32]	chr3	167863	26	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	ANKRD28	ENSG00000206560.12	ENST00000399451.6:ENST00000624145.3:ENST00000683139.1:ENST00000412318.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	31	2	2.29724	3.317445	4.33765	0.0554156	0.039714	0.18407	0.143072
chr3	47698384	47698484	1684230	0	-	0.29	(0.28,0.32]	chr3	172058	47	INTRON	INTRON	SMARCC1	ENSG00000173473.11	ENST00000254480.10:ENST00000425518.5:ENST00000462198.5:ENST00000485737.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	31	2	2.29724	3.317445	4.33765	0.0554156	0.039714	0.18407	0.143072
chr4	39757528	39757627	1953588	0	+	0.292929	(0.28,0.32]	chr4	195648	14	INTRON	INTRON	UBE2K	ENSG00000078140.14	ENST00000510934.5:ENST00000261427.10:ENST00000438068.6:ENST00000513231.5:ENST00000503368.5:ENST00000445950.2:ENST00000510719.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	31	2	2.29724	3.317445	4.33765	0.0554156	0.039714	0.18407	0.143072
chr5	65993307	65993407	2371518	0	+	0.29	(0.28,0.32]	chr5	228497	4	SS5_PROX	SS5_PROX:INTRON	ERBIN	ENSG00000112851.15	ENST00000380943.6:ENST00000416865.6:ENST00000380935.5:ENST00000284037.10:ENST00000380938.6:ENST00000511297.5:ENST00000506030.5:ENST00000508515.1	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	2.29724	3.317445	4.33765	0.0554156	0.039714	0.18407	0.143072
chr7	130168402	130168501	3638374	0	-	0.313131	(0.28,0.32]	chr7	338345	15	INTRON	INTRON	TMEM209	ENSG00000146842.17	ENST00000397622.7:ENST00000473456.5:ENST00000462753.5	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	2.29724	3.317445	4.33765	0.0554156	0.039714	0.18407	0.143072
chr21	46547638	46547734	7423418	0	+	0.385417	(0.378,0.408]	chr21	757083	2	INTRON	INTRON	DIP2A	ENSG00000160305.18	ENST00000417564.3:ENST00000651436.1:ENST00000400274.5:ENST00000457905.7	protein_coding	protein_coding	protein_coding	protein_coding	2	37	2	1.97143	3.317405	4.66338	0.0398704	0.0103469	0.161534	0.0850389
chr6	17907467	17907567	3067750	0	-	0.4	(0.378,0.408]	chr6	285100	89	INTRON	INTRON	KIF13A	ENSG00000137177.20	ENST00000378814.9:ENST00000259711.11:ENST00000378826.6:ENST00000378843.6:ENST00000636847.1:ENST00000507576.1:ENST00000505588.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	37	2	1.97143	3.317405	4.66338	0.0398704	0.0103469	0.161534	0.0850389
chr10	35356077	35356176	4424698	0	+	0.393939	(0.378,0.408]	chr10	407899	185	INTRON	INTRON	CCNY	ENSG00000108100.18	ENST00000374706.5:ENST00000490012.6:ENST00000493157.6:ENST00000374704.8:ENST00000265375.13:ENST00000339497.7:ENST00000492478.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	37	2	1.89621	3.3173	4.73839	0.0488044	0.00837252	0.173377	0.0774402
chr10	124919870	124919970	4535288	0	+	0.59	(0.57,1]	chr10	418562	22	INTRON	INTRON	ENSG00000249456	ENSG00000249456.1	ENST00000508096.1	lncRNA	lncRNA	lncRNA	lncRNA	3	44	2	3.13943	3.3173	3.49517	6.03609e-4	3.01503e-4	0.0226059	0.0155054
chr12	11159330	11159421	5269392	0	-	0.384615	(0.378,0.408]	chr12	502263	7	EXON_PSEUDO	EXON_PSEUDO:INTRON	ENSG00000275778:PRH1:ENSG00000256981	ENSG00000275778.2:ENSG00000231887.8:ENSG00000256981.1	ENST00000536668.2:ENST00000535024.6:ENST00000541977.5:ENST00000546265.1:ENST00000541175.1:ENST00000535136.1	protein_coding	protein_coding	protein_coding:unprocessed_pseudogene	protein_coding:nonsense_mediated_decay:processed_transcript:unprocessed_pseudogene	2	37	2	1.89621	3.3173	4.73839	0.0488044	0.00837252	0.173377	0.0774402
chr7	101929357	101929457	3367486	0	+	0.38	(0.378,0.408]	chr7	315225	128	INTRON	INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000497815.5:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000558469.5:ENST00000560541.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	37	2	1.89621	3.3173	4.73839	0.0488044	0.00837252	0.173377	0.0774402
chr17	39201521	39201620	6606946	0	+	0.393939	(0.378,0.408]	chr17	643235	3	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	RPL19	ENSG00000108298.12	ENST00000678147.1:ENST00000225430.9:ENST00000678609.1:ENST00000679038.1:ENST00000579374.5:ENST00000678012.1:ENST00000577741.2:ENST00000579260.5:ENST00000582193.5:ENST00000678791.1:ENST00000678573.1:ENST00000585199.2:ENST00000678189.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	134	2	3.07242	3.31725	3.56208	6.94246e-4	8.32607e-5	0.0240761	0.00815123
chr7	12396872	12396971	3485371	0	-	0.393939	(0.378,0.408]	chr7	325970	27	INTRON	INTRON	VWDE	ENSG00000146530.15	ENST00000275358.8:ENST00000452576.6:ENST00000521169.5:ENST00000326715.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	116	2	2.34975	3.3171850000000003	4.28462	0.0021928	3.32237e-5	0.0435144	0.00487221
chr5	177151798	177151898	2553880	0	+	0.47	(0.44,0.476]	chr5	243927	145	INTRON	INTRON	NSD1	ENSG00000165671.22	ENST00000508896.6:ENST00000689549.1:ENST00000354179.9:ENST00000686993.1:ENST00000689326.1:ENST00000439151.7:ENST00000510954.6:ENST00000689345.1:ENST00000347982.9:ENST00000687453.1:ENST00000685206.1:ENST00000638627.3:ENST00000644863.2:ENST00000688613.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	44	2	1.87325	3.3169649999999997	4.76068	0.0265709	0.00653414	0.134088	0.0699952
chr11	83082894	83082993	4840537	0	+	0.474747	(0.44,0.476]	chr11	451472	7	INTRON	INTRON	RAB30-DT	ENSG00000246067.9	ENST00000658004.1:ENST00000527627.5:ENST00000533528.1:ENST00000658917.1:ENST00000669005.1:ENST00000665456.1	lncRNA	lncRNA	lncRNA	lncRNA	2	60	2	3.12799	3.316915	3.50584	0.0050635	8.66138e-4	0.0621733	0.0266729
chr5	171409636	171409734	2546798	0	+	0.469388	(0.44,0.476]	chr5	243128	15	INTRON	INTRON	NPM1	ENSG00000181163.14	ENST00000517671.5:ENST00000676613.1:ENST00000678186.1:ENST00000678267.1:ENST00000677297.1:ENST00000521672.6:ENST00000679190.1:ENST00000677467.1:ENST00000678280.1:ENST00000676625.1:ENST00000351986.10:ENST00000676504.1:ENST00000676589.1:ENST00000677357.1:ENST00000296930.10:ENST00000521260.2:ENST00000518587.2:ENST00000678774.1:ENST00000677600.1:ENST00000677741.1:ENST00000677325.1:ENST00000677672.1:ENST00000677907.1:ENST00000677904.1:ENST00000677682.1:ENST00000524204.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	60	2	3.12799	3.316915	3.50584	0.0050635	8.66138e-4	0.0621733	0.0266729
chr15	89893368	89893465	6257847	0	-	0.360825	(0.35,0.378]	chr15	597114	4	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	AP3S2:ARPIN-AP3S2	ENSG00000157823.17:ENSG00000250021.7	ENST00000336418.9:ENST00000398333.7:ENST00000423566.6:ENST00000558011.5:ENST00000560940.5:ENST00000557999.5:ENST00000558806.5:ENST00000558999.5:ENST00000559629.1:ENST00000558648.5:ENST00000560184.5:ENST00000560224.1:ENST00000560251.1:ENST00000617003.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	46	2	1.58862	3.3168699999999998	5.04512	0.0615516	0.00393262	0.193423	0.0548259
chr10	50377108	50377208	4618216	0	-	0.46	(0.44,0.476]	chr10	425422	324	INTRON	INTRON	SGMS1	ENSG00000198964.14	ENST00000429490.5:ENST00000361781.7:ENST00000619438.4:ENST00000492601.2:ENST00000609445.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	27	2	2.39604	3.316795	4.23755	0.0404291	0.0263357	0.161534	0.122221
chr11	68511044	68511144	4817837	0	+	0.46	(0.44,0.476]	chr11	448913	54	INTRON	INTRON	PPP6R3	ENSG00000110075.15	ENST00000530427.5:ENST00000528635.5:ENST00000529907.5:ENST00000533127.5:ENST00000534534.5:ENST00000529344.5:ENST00000524845.5:ENST00000393800.7:ENST00000265637.8:ENST00000524904.5:ENST00000393801.7:ENST00000265636.9:ENST00000529710.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	27	2	2.39604	3.316795	4.23755	0.0404291	0.0263357	0.161534	0.122221
chr12	14388190	14388289	5082945	0	+	0.454545	(0.44,0.476]	chr12	480401	24	INTRON	INTRON	ATF7IP	ENSG00000171681.13	ENST00000539659.5:ENST00000537653.5:ENST00000261168.9:ENST00000538511.5:ENST00000545723.1:ENST00000543189.5:ENST00000536444.5:ENST00000542967.1:ENST00000534828.1:ENST00000535132.1:ENST00000544627.5:ENST00000541654.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	27	2	2.39604	3.316795	4.23755	0.0404291	0.0263357	0.161534	0.122221
chr14	58335311	58335411	5731572	0	+	0.46	(0.44,0.476]	chr14	544200	34	INTRON	INTRON	ARID4A	ENSG00000032219.19	ENST00000348476.7:ENST00000355431.8:ENST00000395168.7:ENST00000431317.6:ENST00000417477.2	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	2.39604	3.316795	4.23755	0.0404291	0.0263357	0.161534	0.122221
chr16	4391215	4391314	6437110	0	-	0.464646	(0.44,0.476]	chr16	619785	22	INTRON	INTRON	CORO7	ENSG00000262246.6	ENST00000251166.9:ENST00000571227.5:ENST00000537233.6:ENST00000574025.5:ENST00000575714.5:ENST00000574311.5:ENST00000576437.5:ENST00000571756.5:ENST00000572549.5:ENST00000572044.1:ENST00000573245.1:ENST00000571059.5:ENST00000571052.5:ENST00000575038.5:ENST00000570645.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	27	2	2.39604	3.316795	4.23755	0.0404291	0.0263357	0.161534	0.122221
chr16	75060766	75060865	6390037	0	+	0.474747	(0.44,0.476]	chr16	614488	135	INTRON	INTRON	ZNRF1	ENSG00000186187.12	ENST00000335325.9:ENST00000320619.10:ENST00000567962.5:ENST00000566250.5:ENST00000564320.1:ENST00000568511.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	27	2	2.39604	3.316795	4.23755	0.0404291	0.0263357	0.161534	0.122221
chr18	12481168	12481268	6947511	0	-	0.46	(0.44,0.476]	chr18	687331	9	INTRON	INTRON	SPIRE1	ENSG00000134278.16	ENST00000409402.9:ENST00000410092.7:ENST00000309836.9:ENST00000440472.6:ENST00000453447.6:ENST00000464481.5:ENST00000592156.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	27	2	2.39604	3.316795	4.23755	0.0404291	0.0263357	0.161534	0.122221
chr2	11799245	11799344	694489	0	+	0.464646	(0.44,0.476]	chr2	81401	34	INTRON	INTRON	LPIN1	ENSG00000134324.12	ENST00000449576.6:ENST00000425416.6:ENST00000396097.5:ENST00000396099.5:ENST00000256720.6:ENST00000674199.1:ENST00000404113.6:ENST00000454151.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	27	2	2.39604	3.316795	4.23755	0.0404291	0.0263357	0.161534	0.122221
chr2	108775431	108775531	847993	0	+	0.46	(0.44,0.476]	chr2	94900	3	SS3_PROX	SS3_PROX:INTRON	RANBP2	ENSG00000153201.16	ENST00000283195.11	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	2.39604	3.316795	4.23755	0.0404291	0.0263357	0.161534	0.122221
chr3	17736842	17736942	1630376	0	-	0.47	(0.44,0.476]	chr3	168275	346	INTRON	INTRON	TBC1D5	ENSG00000131374.15	ENST00000253692.11:ENST00000696125.1:ENST00000414318.2:ENST00000429383.8:ENST00000415814.6:ENST00000452492.6:ENST00000412981.5:ENST00000428355.5:ENST00000425944.5:ENST00000430169.5:ENST00000445294.5:ENST00000414349.5:ENST00000443499.6:ENST00000444756.5:ENST00000497531.5:ENST00000443386.5:ENST00000446863.5:ENST00000444471.5:ENST00000481396.5:ENST00000423331.6:ENST00000485432.1:ENST00000471679.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	27	2	2.39604	3.316795	4.23755	0.0404291	0.0263357	0.161534	0.122221
chr4	84831112	84831212	2189896	0	-	0.47	(0.44,0.476]	chr4	215249	3	SS5_PROX	SS5_PROX:INTRON	WDFY3	ENSG00000163625.16	ENST00000295888.9:ENST00000426414.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	27	2	2.39604	3.316795	4.23755	0.0404291	0.0263357	0.161534	0.122221
chr5	90717769	90717863	2422037	0	+	0.446809	(0.44,0.476]	chr5	233013	12	EXON_MRNA	EXON_MRNA:INTRON	ADGRV1	ENSG00000164199.18	ENST00000405460.9:ENST00000639473.1:ENST00000639431.1:ENST00000640779.1:ENST00000640374.1:ENST00000509621.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	27	2	2.39604	3.316795	4.23755	0.0404291	0.0263357	0.161534	0.122221
chr6	31651555	31651655	3079018	0	-	0.46	(0.44,0.476]	chr6	286872	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	BAG6	ENSG00000204463.14	ENST00000211379.9:ENST00000679119.1:ENST00000375964.11:ENST00000676571.1:ENST00000676615.2:ENST00000375976.8:ENST00000362049.10:ENST00000439687.6:ENST00000437771.5:ENST00000435080.5:ENST00000456622.5:ENST00000452994.5:ENST00000434444.5:ENST00000428326.5:ENST00000451898.5:ENST00000433828.5:ENST00000424480.5:ENST00000424176.5:ENST00000441054.5:ENST00000456286.5:ENST00000454165.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	27	2	2.39604	3.316795	4.23755	0.0404291	0.0263357	0.161534	0.122221
chr8	143446119	143446219	4082085	0	-	0.47	(0.44,0.476]	chr8	370865	46	INTRON	INTRON	ZC3H3	ENSG00000014164.7	ENST00000262577.6	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	2.39604	3.316795	4.23755	0.0404291	0.0263357	0.161534	0.122221
chr2	74204328	74204426	813285	0	+	0.479592	(0.476,0.515]	chr2	90925	30	EXON_MRNA	EXON_MRNA:INTRON	MTHFD2	ENSG00000065911.13	ENST00000677997.1:ENST00000677170.1:ENST00000678684.1:ENST00000409804.5:ENST00000489041.2:ENST00000470592.5:ENST00000678955.1:ENST00000394053.7:ENST00000677377.1:ENST00000679055.1:ENST00000678340.1:ENST00000477455.5:ENST00000409601.1:ENST00000678228.1:ENST00000488086.1:ENST00000462026.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	60	2	3.29939	3.316775	3.33416	0.00230489	0.00211868	0.0428247	0.0425644
chr16	81633079	81633179	6406886	0	+	0.33	(0.32,0.35]	chr16	615046	110	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5	protein_coding	protein_coding	protein_coding	protein_coding	2	45	2	1.99307	3.316765	4.64046	0.04271	0.00724767	0.148082	0.0756327
chr5	154931998	154932098	2756985	0	-	0.33	(0.32,0.35]	chr5	260132	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GEMIN5	ENSG00000082516.9	ENST00000285873.8	protein_coding	protein_coding	protein_coding	protein_coding	2	45	2	1.99307	3.316765	4.64046	0.04271	0.00724767	0.148082	0.0756327
chr12	122101260	122101360	5240087	0	+	0.39	(0.378,0.408]	chr12	497496	216	INTRON	INTRON	MLXIP	ENSG00000175727.14	ENST00000319080.12	protein_coding	protein_coding	protein_coding	protein_coding	4	51	2	1.51223	3.3167549999999997	5.12128	0.051139	0.00251746	0.176696	0.0446195
chr11	57408559	57408654	4953256	0	-	0.284211	(0.28,0.32]	chr11	464895	8	EXON_MRNA	EXON_MRNA:INTRON	ENSG00000254979:SLC43A3	ENSG00000254979.5:ENSG00000134802.18	ENST00000534081.5:ENST00000529411.1:ENST00000395124.6:ENST00000395123.6:ENST00000625097.1:ENST00000352187.5:ENST00000529554.5:ENST00000525205.5:ENST00000533524.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:TEC	5	174	2	2.74601	3.3167400000000002	3.88747	0.00100442	3.00104e-5	0.0292217	0.00455026
chr12	110401930	110402030	5409181	0	-	0.3	(0.28,0.32]	chr12	516463	51	INTRON	INTRON	ANAPC7:ENSG00000258210	ENSG00000196510.14:ENSG00000258210.1	ENST00000455511.9:ENST00000450008.3:ENST00000552170.2:ENST00000550231.1:ENST00000464697.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay	6	188	2	3.12523	3.3166900000000004	3.50815	1.92578e-4	5.25694e-5	0.0127226	0.00591845
chr1	16369411	16369511	35782	0	+	0.46	(0.44,0.476]	chr1	4353	10	INTRON	INTRON	SZRD1	ENSG00000055070.17	ENST00000475078.1:ENST00000471507.5:ENST00000401089.3:ENST00000486763.5:ENST00000401088.9:ENST00000475554.5:ENST00000476423.5:ENST00000472351.5:ENST00000492354.1:ENST00000472461.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	27	2	2.29425	3.31662	4.33899	0.0518406	0.0206616	0.176696	0.110999
chr1	47367768	47367868	97915	0	+	0.47	(0.44,0.476]	chr1	13143	90	INTRON	INTRON	CMPK1	ENSG00000162368.14	ENST00000371873.10:ENST00000371871.8:ENST00000450808.2:ENST00000371870.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	27	2	2.29425	3.31662	4.33899	0.0518406	0.0206616	0.176696	0.110999
chr1	247130858	247130958	683456	0	-	0.47	(0.44,0.476]	chr1	80146	66	INTRON	INTRON	ZNF124	ENSG00000196418.13	ENST00000472531.5:ENST00000476312.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	27	2	2.29425	3.31662	4.33899	0.0518406	0.0206616	0.176696	0.110999
chr10	84144606	84144690	4477090	0	+	0.440476	(0.44,0.476]	chr10	412138	1	SS3_PROX	SS3_PROX:INTRON	GHITM	ENSG00000165678.22	ENST00000691609.1:ENST00000372134.6:ENST00000690587.1:ENST00000686583.1:ENST00000690067.1:ENST00000691751.1:ENST00000687085.1:ENST00000692871.1:ENST00000691155.1:ENST00000690920.1:ENST00000688802.1:ENST00000686247.1:ENST00000690283.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	27	2	2.29425	3.31662	4.33899	0.0518406	0.0206616	0.176696	0.110999
chr19	34453859	34453959	7053384	0	+	0.47	(0.44,0.476]	chr19	703544	2	SS3_PROX	SS3_PROX:INTRON	UBA2	ENSG00000126261.13	ENST00000586313.1:ENST00000246548.9:ENST00000439527.6:ENST00000591016.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	27	2	2.29425	3.31662	4.33899	0.0518406	0.0206616	0.176696	0.110999
chr21	28989897	28989996	7436668	0	-	0.474747	(0.44,0.476]	chr21	758446	26	INTRON	INTRON	LTN1	ENSG00000198862.14	ENST00000614971.4:ENST00000389194.7:ENST00000361371.10:ENST00000389195.7	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	2.29425	3.31662	4.33899	0.0518406	0.0206616	0.176696	0.110999
chr3	17721647	17721747	1630224	0	-	0.47	(0.44,0.476]	chr3	168275	194	INTRON	INTRON	TBC1D5	ENSG00000131374.15	ENST00000253692.11:ENST00000696125.1:ENST00000414318.2:ENST00000429383.8:ENST00000415814.6:ENST00000452492.6:ENST00000412981.5:ENST00000428355.5:ENST00000425944.5:ENST00000430169.5:ENST00000445294.5:ENST00000414349.5:ENST00000443499.6:ENST00000444756.5:ENST00000497531.5:ENST00000443386.5:ENST00000446863.5:ENST00000444471.5:ENST00000481396.5:ENST00000423331.6:ENST00000485432.1:ENST00000471679.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	27	2	2.29425	3.31662	4.33899	0.0518406	0.0206616	0.176696	0.110999
chr3	38170734	38170833	1398596	0	+	0.474747	(0.44,0.476]	chr3	146661	44	INTRON	INTRON	OXSR1	ENSG00000172939.9	ENST00000492714.1:ENST00000446845.5:ENST00000311806.8:ENST00000426620.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	27	2	2.29425	3.31662	4.33899	0.0518406	0.0206616	0.176696	0.110999
chr4	77925342	77925441	1980500	0	+	0.454545	(0.44,0.476]	chr4	198363	156	INTRON	INTRON	MRPL1	ENSG00000169288.18	ENST00000315567.13:ENST00000502384.3:ENST00000504901.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	27	2	2.29425	3.31662	4.33899	0.0518406	0.0206616	0.176696	0.110999
chr4	152781525	152781625	2065141	0	+	0.46	(0.44,0.476]	chr4	204403	9	INTRON	INTRON	ARFIP1	ENSG00000164144.16	ENST00000451320.6:ENST00000429148.6:ENST00000353617.7:ENST00000405727.6:ENST00000356064.3:ENST00000510831.5:ENST00000509413.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	27	2	2.29425	3.31662	4.33899	0.0518406	0.0206616	0.176696	0.110999
chr8	39024120	39024218	3738564	0	+	0.469388	(0.44,0.476]	chr8	347503	4	INTRON	INTRON	ADAM9	ENSG00000168615.13	ENST00000678474.1:ENST00000676765.1:ENST00000676936.1:ENST00000677908.1:ENST00000677004.1:ENST00000677165.1:ENST00000481058.2:ENST00000676643.1:ENST00000676669.1:ENST00000679268.1:ENST00000677582.1:ENST00000676617.1:ENST00000677137.1:ENST00000678540.1:ENST00000677359.1:ENST00000678730.1:ENST00000487273.7:ENST00000678253.1:ENST00000676489.1:ENST00000379917.7:ENST00000468065.5:ENST00000481873.7:ENST00000676919.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	27	2	2.29425	3.31662	4.33899	0.0518406	0.0206616	0.176696	0.110999
chr9	27522063	27522162	4240050	0	-	0.454545	(0.44,0.476]	chr9	389681	660	INTRON	INTRON	MOB3B	ENSG00000120162.10	ENST00000262244.6	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	2.29425	3.31662	4.33899	0.0518406	0.0206616	0.176696	0.110999
chrX	155603133	155603233	7918399	0	-	0.46	(0.44,0.476]	chrX	806317	575	INTRON	INTRON	TMLHE	ENSG00000185973.12	ENST00000334398.8:ENST00000675642.1:ENST00000369439.4	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	2.29425	3.31662	4.33899	0.0518406	0.0206616	0.176696	0.110999
chr2	241320287	241320387	1053652	0	+	0.33	(0.32,0.35]	chr2	112200	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	SEPTIN2	ENSG00000168385.18	ENST00000391973.6:ENST00000428282.5:ENST00000492978.5:ENST00000360051.7:ENST00000407017.5:ENST00000445030.5:ENST00000428524.5:ENST00000469434.5:ENST00000616972.4:ENST00000495463.5:ENST00000482304.5:ENST00000475474.5:ENST00000401990.5:ENST00000469175.5:ENST00000407971.5:ENST00000461048.5:ENST00000457335.5:ENST00000436795.5:ENST00000494824.5:ENST00000411484.5:ENST00000462147.5:ENST00000434955.5:ENST00000466211.5:ENST00000391971.7:ENST00000402092.6:ENST00000484740.1:ENST00000473479.5:ENST00000464128.5:ENST00000441533.5:ENST00000467971.5:ENST00000425899.5:ENST00000443492.5:ENST00000437066.5:ENST00000429791.5:ENST00000420786.5:ENST00000475823.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	142	2	2.52771	3.316615	4.10552	5.57285e-4	1.19038e-4	0.021494	0.0098845100000000009
chr22	49519280	49519380	7601272	0	-	0.36	(0.35,0.378]	chr22	778566	777	INTRON	INTRON	MIR3667HG	ENSG00000188511.13	ENST00000414287.5:ENST00000416411.1	lncRNA	lncRNA	lncRNA	lncRNA	3	87	2	3.05367	3.316555	3.57944	0.0010429	7.17897e-4	0.0293983	0.0244389
chr18	3248960	3249060	6866446	0	+	0.39	(0.378,0.408]	chr18	680231	2	SS3_PROX	SS3_PROX:INTRON	MYL12A	ENSG00000101608.13	ENST00000579226.5:ENST00000217652.8:ENST00000580353.1:ENST00000578611.5:ENST00000585090.1:ENST00000583449.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	32	2	2.66785	3.31628	3.96471	0.032421	0.0224639	0.145026	0.11692
chr17	2302344	2302443	6704721	0	-	0.525253	(0.515,0.57]	chr17	656377	13	INTRON	INTRON	SMG6	ENSG00000070366.14	ENST00000263073.11	protein_coding	protein_coding	protein_coding	protein_coding	2	33	2	1.94945	3.3162749999999996	4.6831	0.0414068	0.00471288	0.161557	0.0600108
chr17	47581697	47581796	6622100	0	+	0.545455	(0.515,0.57]	chr17	645877	23	EXON_MRNA	EXON_MRNA:INTRON	NPEPPS	ENSG00000141279.17	ENST00000525007.5:ENST00000525037.5:ENST00000677710.1:ENST00000530173.6:ENST00000526247.6:ENST00000677226.1:ENST00000322157.9:ENST00000678461.1:ENST00000532729.6:ENST00000677120.1:ENST00000678909.1:ENST00000678496.1:ENST00000678262.1:ENST00000677370.1:ENST00000677664.1:ENST00000528751.6:ENST00000527298.5:ENST00000534691.1:ENST00000602788.5:ENST00000527824.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	33	2	1.94945	3.3162749999999996	4.6831	0.0414068	0.00471288	0.161557	0.0600108
chr17	82592214	82592313	6693344	0	+	0.606061	(0.57,1]	chr17	654683	46	INTRON	INTRON	FOXK2	ENSG00000141568.21	ENST00000473637.6:ENST00000335255.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	95	2	2.85824	3.3162700000000003	3.7743	9.03658e-5	4.26336e-7	0.00795396	3.70422e-4
chr7	148835330	148835429	3670270	0	-	0.575758	(0.57,1]	chr7	340610	22	INTRON	INTRON	EZH2	ENSG00000106462.12	ENST00000683292.1:ENST00000320356.7:ENST00000492143.5:ENST00000478654.5:ENST00000350995.6:ENST00000460911.5:ENST00000683744.1:ENST00000682317.1:ENST00000682263.1:ENST00000684300.1:ENST00000476773.5:ENST00000483967.5:ENST00000498186.5:ENST00000483012.1:ENST00000682401.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	16	200	2	3.23408	3.31621	3.39834	2.85693e-7	1.05224e-8	2.89133e-4	3.51053e-5
chrX	154363084	154363184	7913685	0	-	0.51	(0.476,0.515]	chrX	805773	3	SS3_PROX	SS3_PROX:INTRON	FLNA	ENSG00000196924.19	ENST00000420627.5:ENST00000422373.6:ENST00000360319.9:ENST00000369856.8:ENST00000369850.10:ENST00000676696.1:ENST00000610817.5:ENST00000673639.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	82	2	3.24596	3.31611	3.38626	0.00322919	1.1754e-4	0.0507087	0.00930356
chr1	53791163	53791260	460126	0	-	0.525773	(0.515,0.57]	chr1	55376	16	INTRON	INTRON	NDC1	ENSG00000058804.12	ENST00000371429.4	protein_coding	protein_coding	protein_coding	protein_coding	2	35	2	1.7074	3.316065	4.92473	0.0779432	0.00108255	0.196685	0.0300133
chr15	64474322	64474421	6044225	0	+	0.525253	(0.515,0.57]	chr15	575688	131	INTRON	INTRON	ZNF609	ENSG00000180357.10	ENST00000326648.5:ENST00000416172.1	protein_coding	protein_coding	protein_coding	protein_coding	2	35	2	1.7074	3.316065	4.92473	0.0779432	0.00108255	0.196685	0.0300133
chrX	65677046	65677146	7671181	0	+	0.53	(0.515,0.57]	chrX	785145	88	INTRON	INTRON	MSN	ENSG00000147065.17	ENST00000609672.5:ENST00000360270.7	protein_coding	protein_coding	protein_coding	protein_coding	2	35	2	1.7074	3.316065	4.92473	0.0779432	0.00108255	0.196685	0.0300133
chr6	157887170	157887270	3016407	0	+	0.32	(0.28,0.32]	chr6	281379	103	INTRON	INTRON	SNX9	ENSG00000130340.17	ENST00000680863.1:ENST00000679814.1:ENST00000680464.1:ENST00000681186.1:ENST00000679732.1:ENST00000681183.1:ENST00000681534.1:ENST00000681651.1:ENST00000680089.1:ENST00000680078.1:ENST00000680974.1:ENST00000680095.1:ENST00000680015.1:ENST00000681138.1:ENST00000392185.8:ENST00000679790.1:ENST00000680495.1:ENST00000679691.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	102	2	2.84671	3.31603	3.78535	0.00216662	6.21154e-4	0.0434015	0.0229151
chr4	126621889	126621989	2236928	0	-	0.3	(0.28,0.32]	chr4	219023	1564	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	4	63	2	1.96841	3.316	4.66359	0.0193496	0.0124199	0.108861	0.0973643
chr10	73615287	73615387	4651378	0	-	0.46	(0.44,0.476]	chr10	428103	1	SS3_PROX	SS3_PROX:INTRON	USP54	ENSG00000166348.20	ENST00000339859.8:ENST00000689425.1:ENST00000685297.1:ENST00000422491.7:ENST00000433394.1:ENST00000474929.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	29	2	2.29842	3.31594	4.33346	0.0552483	0.0120349	0.165463	0.0962115
chr19	5588325	5588407	7123990	0	-	0.463415	(0.44,0.476]	chr19	716948	4	SS3_PROX	SS3_PROX:INTRON	SAFB2	ENSG00000130254.12	ENST00000252542.9:ENST00000587802.5:ENST00000589925.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	29	2	2.29842	3.31594	4.33346	0.0552483	0.0120349	0.165463	0.0962115
chr3	195268399	195268498	1894166	0	-	0.454545	(0.44,0.476]	chr3	189521	85	INTRON	INTRON	XXYLT1	ENSG00000173950.16	ENST00000310380.11:ENST00000455281.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	29	2	2.29842	3.31594	4.33346	0.0552483	0.0120349	0.165463	0.0962115
chrX	118435426	118435523	7708014	0	+	0.453608	(0.44,0.476]	chrX	788606	22	INTRON	INTRON	WDR44	ENSG00000131725.14	ENST00000371822.9:ENST00000254029.8:ENST00000371825.7:ENST00000371848.3	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	2.29842	3.31594	4.33346	0.0552483	0.0120349	0.165463	0.0962115
chr13	95117900	95118000	5638019	0	-	0.31	(0.28,0.32]	chr13	537056	15	INTRON	INTRON	ABCC4	ENSG00000125257.16	ENST00000645237.2:ENST00000643051.1:ENST00000643842.1:ENST00000646439.1:ENST00000644880.1:ENST00000643816.1:ENST00000536256.3:ENST00000643556.1:ENST00000629385.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	75	2	3.16101	3.3158149999999997	3.47062	0.0061861	0.00137212	0.0677395	0.0340241
chr20	62924838	62924937	7362438	0	-	0.373737	(0.35,0.378]	chr20	751210	101	INTRON	INTRON	DIDO1	ENSG00000101191.17	ENST00000266070.8:ENST00000395343.6:ENST00000395340.5:ENST00000370371.8:ENST00000370368.5:ENST00000354665.8	protein_coding	protein_coding	protein_coding	protein_coding	3	90	2	3.04873	3.315795	3.58286	0.00106752	6.77448e-4	0.0299955	0.0236287
chr1	35952160	35952260	71355	0	+	0.55	(0.515,0.57]	chr1	9138	59	INTRON	INTRON	AGO3	ENSG00000126070.20	ENST00000324350.9:ENST00000397828.3:ENST00000634486.1:ENST00000373191.9:ENST00000246314.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	35	2	1.9459	3.31579	4.68568	0.0429089	0.00270027	0.148082	0.0479115
chr19	19387335	19387435	7035161	0	+	0.57	(0.515,0.57]	chr19	701429	8	INTRON	INTRON	GATAD2A	ENSG00000167491.18	ENST00000494516.6:ENST00000360315.7:ENST00000609040.5:ENST00000417582.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	35	2	1.9459	3.31579	4.68568	0.0429089	0.00270027	0.148082	0.0479115
chr11	68118791	68118891	4972571	0	-	0.38	(0.378,0.408]	chr11	469439	213	INTRON	INTRON	CHKA	ENSG00000110721.12	ENST00000265689.9:ENST00000356135.9:ENST00000531341.1	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	2.30961	3.315675	4.32174	0.055088	0.0132362	0.165463	0.0999551
chr17	37287538	37287636	6761847	0	-	0.397959	(0.378,0.408]	chr17	664932	22	INTRON	INTRON	ACACA	ENSG00000278540.5	ENST00000616317.5:ENST00000614428.4:ENST00000612895.4:ENST00000617649.4:ENST00000613146.4:ENST00000615229.4:ENST00000621960.1:ENST00000617548.1:ENST00000616352.4:ENST00000614789.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	30	2	2.30961	3.315675	4.32174	0.055088	0.0132362	0.165463	0.0999551
chr7	2112798	2112898	3465728	0	-	0.39	(0.378,0.408]	chr7	324046	33	INTRON	INTRON	MAD1L1	ENSG00000002822.16	ENST00000406869.5:ENST00000399654.6:ENST00000402746.5:ENST00000265854.12:ENST00000464742.5:ENST00000491858.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	30	2	2.30961	3.315675	4.32174	0.055088	0.0132362	0.165463	0.0999551
chrX	71399535	71399634	7678574	0	+	0.40404	(0.378,0.408]	chrX	786247	4	INTRON	INTRON	TAF1	ENSG00000147133.17	ENST00000683202.1:ENST00000373790.9:ENST00000423759.6:ENST00000683782.1:ENST00000683668.1:ENST00000276072.9:ENST00000483985.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	30	2	2.30961	3.315675	4.32174	0.055088	0.0132362	0.165463	0.0999551
chr16	3288570	3288670	6281323	0	+	0.43	(0.408,0.44]	chr16	601134	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ZNF263	ENSG00000006194.10	ENST00000538765.2:ENST00000219069.6:ENST00000574253.1:ENST00000575823.1	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	2.6542	3.315495	3.97679	0.0299485	0.0227514	0.142135	0.117618
chr17	37261114	37261212	6761571	0	-	0.428571	(0.408,0.44]	chr17	664882	12	INTRON	INTRON	ACACA	ENSG00000278540.5	ENST00000616317.5:ENST00000614428.4:ENST00000612895.4:ENST00000617649.4:ENST00000613146.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	31	2	2.6542	3.315495	3.97679	0.0299485	0.0227514	0.142135	0.117618
chr21	34082809	34082909	7401185	0	+	0.4	(0.378,0.408]	chr21	753967	87	INTRON	INTRON	MRPS6:SLC5A3	ENSG00000243927.6:ENSG00000198743.7	ENST00000488492.5:ENST00000477091.5:ENST00000399312.3:ENST00000381151.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	45	2	1.89251	3.31545	4.73839	0.0251428	0.00837252	0.133404	0.0774402
chr3	185727124	185727224	1885369	0	-	0.54	(0.515,0.57]	chr3	188573	284	INTRON	INTRON	IGF2BP2	ENSG00000073792.16	ENST00000382199.7:ENST00000346192.7:ENST00000457616.6:ENST00000421047.3:ENST00000461957.5:ENST00000493302.5:ENST00000466476.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	26	2	2.12971	3.315365	4.50102	0.0757903	0.00510768	0.194427	0.0646039
chr5	72325028	72325126	2386664	0	+	0.520408	(0.515,0.57]	chr5	230288	24	INTRON	INTRON	PTCD2	ENSG00000049883.15	ENST00000536805.5:ENST00000543322.5:ENST00000515198.5:ENST00000380639.10:ENST00000308077.9:ENST00000486995.5:ENST00000511752.5:ENST00000503868.5:ENST00000510676.6:ENST00000503315.5:ENST00000493283.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	26	2	2.12971	3.315365	4.50102	0.0757903	0.00510768	0.194427	0.0646039
chr8	140533504	140533602	4075518	0	-	0.520408	(0.515,0.57]	chr8	370180	5	INTRON	INTRON	AGO2	ENSG00000123908.12	ENST00000220592.10:ENST00000519980.5:ENST00000523609.5:ENST00000520412.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	26	2	2.12971	3.315365	4.50102	0.0757903	0.00510768	0.194427	0.0646039
chr16	89875150	89875249	6422448	0	+	0.292929	(0.28,0.32]	chr16	616714	4	SS5_PROX	SS5_PROX:INTRON	TCF25	ENSG00000141002.20	ENST00000640279.1:ENST00000263347.11:ENST00000263346.13:ENST00000561585.1:ENST00000561958.5:ENST00000614813.4:ENST00000565196.5:ENST00000564652.5:ENST00000568412.5:ENST00000563406.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	35	2	2.39347	3.3153300000000003	4.23719	0.0504457	0.0264147	0.156383	0.133676
chr3	16326336	16326436	1375499	0	+	0.29	(0.28,0.32]	chr3	145005	204	INTRON	INTRON	OXNAD1	ENSG00000154814.14	ENST00000605932.5:ENST00000435829.6:ENST00000606098.1	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	2.39347	3.3153300000000003	4.23719	0.0504457	0.0264147	0.156383	0.133676
chr22	20918345	20918445	7480526	0	+	0.42	(0.408,0.44]	chr22	763089	1	SS5_PROX	SS5_PROX:INTRON	CRKL	ENSG00000099942.13	ENST00000354336.8:ENST00000411769.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	18	398	2	2.83741	3.31527	3.79313	2.54461e-6	3.12024e-7	0.00101667	3.04894e-4
chr3	179168876	179168975	1566006	0	+	0.313131	(0.28,0.32]	chr3	161904	188	INTRON	INTRON	PIK3CA	ENSG00000121879.6	ENST00000477735.1:ENST00000263967.4:ENST00000643187.1:ENST00000675786.1:ENST00000468036.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	66	2	1.52982	3.315255	5.10069	0.0379288	0.00610574	0.157212	0.0676501
chr6	17959412	17959512	3068271	0	-	0.4	(0.378,0.408]	chr6	285105	76	INTRON	INTRON	KIF13A	ENSG00000137177.20	ENST00000378814.9:ENST00000259711.11:ENST00000378826.6:ENST00000378843.6:ENST00000636847.1:ENST00000507576.1:ENST00000505588.1:ENST00000502704.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	46	2	2.04622	3.315245	4.58427	0.0149927	0.0128325	0.107704	0.0926667
chr1	2288102	2288201	2765	0	+	0.545455	(0.515,0.57]	chr1	557	397	INTRON	INTRON	SKI	ENSG00000157933.10	ENST00000378536.5:ENST00000508416.1:ENST00000478223.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	26	2	2.34087	3.3150399999999998	4.28921	0.0469761	0.00990051	0.151917	0.0877296
chr1	156330761	156330861	566634	0	-	0.56	(0.515,0.57]	chr1	68009	53	INTRON	INTRON	CCT3	ENSG00000163468.15	ENST00000295688.8:ENST00000368258.7:ENST00000368259.6:ENST00000368262.7:ENST00000472765.6:ENST00000413555.5:ENST00000496684.6:ENST00000533194.5:ENST00000463132.5:ENST00000446905.5:ENST00000490221.5:ENST00000478640.6:ENST00000415548.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	26	2	2.34087	3.3150399999999998	4.28921	0.0469761	0.00990051	0.151917	0.0877296
chr12	32114999	32115099	5107040	0	+	0.53	(0.515,0.57]	chr12	482366	55	INTRON	INTRON	BICD1	ENSG00000151746.15	ENST00000652176.1:ENST00000548411.5:ENST00000395758.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	26	2	2.34087	3.3150399999999998	4.28921	0.0469761	0.00990051	0.151917	0.0877296
chr12	104335417	104335515	5210511	0	+	0.55102	(0.515,0.57]	chr12	493285	7	INTRON	INTRON	TXNRD1	ENSG00000198431.17	ENST00000525566.6:ENST00000503506.6:ENST00000526691.5:ENST00000526390.5:ENST00000529546.5:ENST00000524698.5:ENST00000527688.5:ENST00000526950.1:ENST00000525265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	26	2	2.34087	3.3150399999999998	4.28921	0.0469761	0.00990051	0.151917	0.0877296
chr17	42998912	42999003	6613152	0	+	0.516484	(0.515,0.57]	chr17	644679	1	EXON_MRNA	EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPL27	ENSG00000131469.15	ENST00000589037.5:ENST00000253788.12:ENST00000593262.1:ENST00000587478.1:ENST00000588830.1:ENST00000589913.6:ENST00000590864.2:ENST00000586277.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	26	2	2.34087	3.3150399999999998	4.28921	0.0469761	0.00990051	0.151917	0.0877296
chr2	47848044	47848144	1115537	0	-	0.55	(0.515,0.57]	chr2	119684	79	INTRON	INTRON	FBXO11	ENSG00000138081.22	ENST00000684712.1:ENST00000682451.1:ENST00000403359.8:ENST00000402508.5:ENST00000683894.1:ENST00000681999.1:ENST00000682975.1:ENST00000684085.1:ENST00000492225.5:ENST00000424163.2:ENST00000480038.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	26	2	2.34087	3.3150399999999998	4.28921	0.0469761	0.00990051	0.151917	0.0877296
chr4	6785039	6785139	1921611	0	+	0.55	(0.515,0.57]	chr4	192985	18	INTRON	INTRON	KIAA0232	ENSG00000170871.12	ENST00000503278.1:ENST00000508423.1:ENST00000307659.6:ENST00000425103.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	26	2	2.34087	3.3150399999999998	4.28921	0.0469761	0.00990051	0.151917	0.0877296
chr6	89841719	89841818	2916562	0	+	0.525253	(0.515,0.57]	chr6	275602	4	INTRON	INTRON	CASP8AP2	ENSG00000118412.13	ENST00000552401.5:ENST00000419040.6:ENST00000547893.5:ENST00000237177.10:ENST00000551025.4:ENST00000548224.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	26	2	2.34087	3.3150399999999998	4.28921	0.0469761	0.00990051	0.151917	0.0877296
chr7	135378810	135378910	3647634	0	-	0.52	(0.515,0.57]	chr7	339120	144	INTRON	INTRON	CNOT4	ENSG00000080802.20	ENST00000541284.6:ENST00000451834.5:ENST00000423368.6:ENST00000361528.8:ENST00000473470.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	26	2	2.34087	3.3150399999999998	4.28921	0.0469761	0.00990051	0.151917	0.0877296
chr1	1318306	1318399	359499	0	-	0.430108	(0.408,0.44]	chr1	41635	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	INTS11:ENSG00000240731	ENSG00000127054.22:ENSG00000240731.1	ENST00000540437.5:ENST00000545578.5:ENST00000620829.4:ENST00000435064.6:ENST00000323275.10:ENST00000411962.5:ENST00000419704.5:ENST00000458452.7:ENST00000421495.6:ENST00000532772.5:ENST00000450926.6:ENST00000527098.5:ENST00000528879.5:ENST00000531377.5:ENST00000434694.6:ENST00000488042.6:ENST00000526797.5:ENST00000526332.5:ENST00000430786.5:ENST00000527719.5:ENST00000530031.5:ENST00000526113.1:ENST00000526904.5:ENST00000525603.1:ENST00000444968.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA	4	50	2	1.43792	3.31497	5.19202	0.062843	0.0016671	0.196433	0.0369207
chr15	28200359	28200459	6122794	0	-	0.49	(0.476,0.515]	chr15	583167	12	INTRON	INTRON	HERC2	ENSG00000128731.18	ENST00000261609.13:ENST00000567869.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	49	2	1.93059	3.3148850000000003	4.69918	0.023762	0.00400966	0.118822	0.057767
chr15	41287013	41287093	6004415	0	+	0.2875	(0.28,0.32]	chr15	571254	2	SS3_PROX	SS3_PROX:INTRON	OIP5-AS1	ENSG00000247556.6	ENST00000558945.5:ENST00000500949.6:ENST00000561275.5:ENST00000560706.5:ENST00000559368.5:ENST00000561226.5:ENST00000557993.5:ENST00000501665.2	lncRNA	lncRNA	lncRNA	lncRNA	2	75	2	3.19774	3.3148	3.43186	0.00548491	0.00160646	0.0648867	0.0367961
chr11	86051578	86051677	5014668	0	-	0.494949	(0.476,0.515]	chr11	473022	196	INTRON	INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000630913.2:ENST00000528398.5:ENST00000356360.9:ENST00000534412.5:ENST00000531558.1:ENST00000531930.5:ENST00000532041.5:ENST00000525162.5:ENST00000528256.1:ENST00000528411.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	225	2	3.12466	3.31475	3.50484	4.9835e-5	7.88482e-7	0.00611327	5.00249e-4
chr1	225427230	225427330	645751	0	-	0.48	(0.476,0.515]	chr1	76395	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	LBR	ENSG00000143815.15	ENST00000272163.9:ENST00000338179.6:ENST00000651341.1:ENST00000425080.1:ENST00000421383.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	27	2	2.38442	3.3147149999999996	4.24501	0.0417472	0.0247713	0.161736	0.12011
chr1	227247573	227247672	651010	0	-	0.484848	(0.476,0.515]	chr1	77102	278	INTRON	INTRON	CDC42BPA	ENSG00000143776.20	ENST00000366766.8:ENST00000366769.7:ENST00000334218.9:ENST00000366767.7:ENST00000366764.8:ENST00000478573.6:ENST00000682551.1:ENST00000462553.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	27	2	2.38442	3.3147149999999996	4.24501	0.0417472	0.0247713	0.161736	0.12011
chr10	24646596	24646696	4581171	0	-	0.48	(0.476,0.515]	chr10	422181	111	INTRON	INTRON	ARHGAP21	ENSG00000107863.20	ENST00000612832.4:ENST00000396432.7:ENST00000680286.1:ENST00000376410.7:ENST00000446003.5:ENST00000476499.1:ENST00000416305.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	27	2	2.38442	3.3147149999999996	4.24501	0.0417472	0.0247713	0.161736	0.12011
chr10	68462894	68462993	4639678	0	-	0.484848	(0.476,0.515]	chr10	426716	33	INTRON	INTRON	DNA2	ENSG00000138346.15	ENST00000358410.8:ENST00000551118.6:ENST00000399179.6:ENST00000399180.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	27	2	2.38442	3.3147149999999996	4.24501	0.0417472	0.0247713	0.161736	0.12011
chr19	46724045	46724132	7195024	0	-	0.482759	(0.476,0.515]	chr19	728876	4	INTRON	INTRON	STRN4	ENSG00000090372.15	ENST00000391910.7:ENST00000263280.11:ENST00000594581.5:ENST00000539396.5:ENST00000595357.5:ENST00000594287.6:ENST00000601631.6:ENST00000598074.1:ENST00000594357.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	27	2	2.38442	3.3147149999999996	4.24501	0.0417472	0.0247713	0.161736	0.12011
chr2	84999238	84999338	820544	0	+	0.49	(0.476,0.515]	chr2	91419	266	INTRON	INTRON	KCMF1	ENSG00000176407.18	ENST00000456682.1:ENST00000409785.9:ENST00000428691.5:ENST00000453448.1	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	2.38442	3.3147149999999996	4.24501	0.0417472	0.0247713	0.161736	0.12011
chr22	17894304	17894404	7549354	0	-	0.49	(0.476,0.515]	chr22	771699	4	SS3_PROX	SS3_PROX:INTRON	MICAL3	ENSG00000243156.9	ENST00000441493.7:ENST00000672019.1:ENST00000400561.6:ENST00000495076.5:ENST00000414725.6:ENST00000383094.7:ENST00000461307.5:ENST00000585038.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	27	2	2.38442	3.3147149999999996	4.24501	0.0417472	0.0247713	0.161736	0.12011
chr3	37133039	37133139	1656199	0	-	0.49	(0.476,0.515]	chr3	170007	35	INTRON	INTRON	LRRFIP2	ENSG00000093167.18	ENST00000336686.9:ENST00000354379.8:ENST00000421276.6:ENST00000396428.6:ENST00000440230.5:ENST00000416425.5:ENST00000461672.5:ENST00000438374.5:ENST00000452742.5:ENST00000436858.5:ENST00000434749.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	27	2	2.38442	3.3147149999999996	4.24501	0.0417472	0.0247713	0.161736	0.12011
chr4	23050846	23050946	1928633	0	+	0.48	(0.476,0.515]	chr4	193953	91	INTRON	INTRON	ENSG00000248837	ENSG00000248837.7	ENST00000659942.1:ENST00000655325.1:ENST00000652324.1:ENST00000653008.1:ENST00000666412.1:ENST00000511453.5:ENST00000667179.1:ENST00000661585.1:ENST00000653872.1:ENST00000660370.1:ENST00000667156.1:ENST00000658109.1:ENST00000653188.1:ENST00000662431.1:ENST00000666579.1:ENST00000663348.1	lncRNA	lncRNA	lncRNA	lncRNA	1	27	2	2.38442	3.3147149999999996	4.24501	0.0417472	0.0247713	0.161736	0.12011
chr6	110774935	110775035	3190052	0	-	0.51	(0.476,0.515]	chr6	297127	6	INTRON	INTRON	CDK19	ENSG00000155111.15	ENST00000323817.7:ENST00000368911.8:ENST00000413605.6:ENST00000457688.5:ENST00000460913.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	27	2	2.38442	3.3147149999999996	4.24501	0.0417472	0.0247713	0.161736	0.12011
chr16	11897185	11897285	6446217	0	-	0.29	(0.28,0.32]	chr16	621115	4	SS3_PROX	SS3_PROX:INTRON	GSPT1	ENSG00000103342.13	ENST00000434724.7:ENST00000439887.6:ENST00000565267.5:ENST00000563468.5:ENST00000420576.6:ENST00000568849.5:ENST00000562169.1	protein_coding	protein_coding	protein_coding	protein_coding	3	103	2	2.47203	3.314685	4.15734	0.0114089	5.50456e-5	0.0886611	0.00608953
chr1	219994493	219994592	638650	0	-	0.181818	[0,0.28]	chr1	75227	53	INTRON	INTRON	EPRS1	ENSG00000136628.18	ENST00000366923.8:ENST00000609181.5	protein_coding	protein_coding	protein_coding	protein_coding	2	48	2	2.24546	3.3146649999999998	4.38387	0.0501911	0.0206502	0.156383	0.122348
chr4	39923347	39923446	2131656	0	-	0.222222	[0,0.28]	chr4	210224	2	INTRON	INTRON	PDS5A	ENSG00000121892.15	ENST00000303538.13:ENST00000503396.5:ENST00000513798.1	protein_coding	protein_coding	protein_coding	protein_coding	2	48	2	2.24546	3.3146649999999998	4.38387	0.0501911	0.0206502	0.156383	0.122348
chr1	70145600	70145699	479282	0	-	0.333333	(0.32,0.35]	chr1	57608	9	UTR3	UTR3:EXON_MRNA	LRRC40	ENSG00000066557.6	ENST00000370952.4	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	2.56618	3.314585	4.06299	0.0559439	0.0274185	0.165463	0.136498
chr11	61432662	61432761	4796543	0	+	0.333333	(0.32,0.35]	chr11	444286	26	EXON_MRNA	EXON_MRNA:INTRON	ENSG00000256591:SDHAF2	ENSG00000256591.5:ENSG00000167985.7	ENST00000544025.5:ENST00000542794.5:ENST00000541135.5:ENST00000542074.1:ENST00000536670.5:ENST00000301761.7:ENST00000534878.5:ENST00000623232.1:ENST00000538594.5:ENST00000537782.5:ENST00000359614.9:ENST00000544801.5:ENST00000536250.1:ENST00000544880.1:ENST00000543265.1:ENST00000543044.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:TEC:processed_transcript	1	30	2	2.56618	3.314585	4.06299	0.0559439	0.0274185	0.165463	0.136498
chr2	55567008	55567106	1124603	0	-	0.336735	(0.32,0.35]	chr2	120611	16	INTRON	INTRON	PPP4R3B	ENSG00000275052.5	ENST00000616407.2:ENST00000611717.4:ENST00000616288.4	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	2.56618	3.314585	4.06299	0.0559439	0.0274185	0.165463	0.136498
chr2	121499183	121499283	1220876	0	-	0.34	(0.32,0.35]	chr2	129999	90	INTRON	INTRON	CLASP1	ENSG00000074054.20	ENST00000263710.8:ENST00000397587.7:ENST00000541377.5:ENST00000409078.8:ENST00000455322.6:ENST00000452274.6:ENST00000418989.5:ENST00000449975.1:ENST00000474065.5:ENST00000480007.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	30	2	2.56618	3.314585	4.06299	0.0559439	0.0274185	0.165463	0.136498
chr6	75655573	75655672	2905493	0	+	0.343434	(0.32,0.35]	chr6	274530	74	INTRON	INTRON	SENP6	ENSG00000112701.18	ENST00000370010.6:ENST00000447266.7:ENST00000327284.12:ENST00000483859.6:ENST00000424947.6:ENST00000436928.7:ENST00000485497.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	30	2	2.56618	3.314585	4.06299	0.0559439	0.0274185	0.165463	0.136498
chr8	94420615	94420715	3992905	0	-	0.33	(0.32,0.35]	chr8	365518	89	INTRON	INTRON	RAD54B:FSBP	ENSG00000197275.14:ENSG00000265817.4	ENST00000336148.10:ENST00000517506.2:ENST00000463267.5:ENST00000518998.5:ENST00000523839.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	30	2	2.56618	3.314585	4.06299	0.0559439	0.0274185	0.165463	0.136498
chr8	123381673	123381773	4042495	0	-	0.33	(0.32,0.35]	chr8	368789	6	INTRON	INTRON	ATAD2	ENSG00000156802.13	ENST00000287394.10:ENST00000517666.5:ENST00000521903.5:ENST00000519124.5:ENST00000521496.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	30	2	2.56618	3.314585	4.06299	0.0559439	0.0274185	0.165463	0.136498
chr9	83674826	83674926	4272746	0	-	0.35	(0.32,0.35]	chr9	392953	51	INTRON	INTRON	UBQLN1	ENSG00000135018.14	ENST00000376395.9:ENST00000533705.5:ENST00000257468.11	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	30	2	2.56618	3.314585	4.06299	0.0559439	0.0274185	0.165463	0.136498
chr9	128842184	128842284	4359385	0	-	0.34	(0.32,0.35]	chr9	400746	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	KYAT1	ENSG00000171097.14	ENST00000462722.5:ENST00000302586.8:ENST00000320665.10:ENST00000483599.5:ENST00000436267.7:ENST00000451800.5:ENST00000416084.5:ENST00000474824.1:ENST00000427720.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	30	2	2.56618	3.314585	4.06299	0.0559439	0.0274185	0.165463	0.136498
chr1	52065508	52065608	101349	0	+	0.5	(0.476,0.515]	chr1	13434	1	SS5_PROX	SS5_PROX:INTRON	BTF3L4	ENSG00000134717.18	ENST00000477828.6:ENST00000489308.6:ENST00000526132.5:ENST00000313334.13:ENST00000472944.6:ENST00000484036.1:ENST00000533836.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	27	2	2.28264	3.3145599999999997	4.34648	0.0534132	0.0193566	0.179876	0.108861
chr1	148898963	148899063	214739	0	+	0.5	(0.476,0.515]	chr1	23778	87	INTRON	INTRON	PDE4DIP	ENSG00000178104.20	ENST00000695768.1:ENST00000695767.1:ENST00000695766.1:ENST00000530472.5:ENST00000695794.1:ENST00000524974.5:ENST00000620605.4:ENST00000585156.5:ENST00000695769.1:ENST00000618462.4:ENST00000695795.1:ENST00000617031.4:ENST00000617527.4:ENST00000533259.1:ENST00000619981.4:ENST00000617454.4:ENST00000613995.4:ENST00000621371.4:ENST00000534536.5:ENST00000528129.5:ENST00000369356.8:ENST00000533845.1:ENST00000526445.1:ENST00000369354.7:ENST00000369347.8:ENST00000369349.7:ENST00000369351.7:ENST00000612094.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	27	2	2.28264	3.3145599999999997	4.34648	0.0534132	0.0193566	0.179876	0.108861
chr1	167229735	167229835	244937	0	+	0.48	(0.476,0.515]	chr1	29245	84	INTRON	INTRON	POU2F1	ENSG00000143190.23	ENST00000559038.5:ENST00000367866.7:ENST00000557909.5:ENST00000271411.8:ENST00000429375.6:ENST00000560232.6:ENST00000442313.5:ENST00000367865.5:ENST00000492850.5:ENST00000541643.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	27	2	2.28264	3.3145599999999997	4.34648	0.0534132	0.0193566	0.179876	0.108861
chr10	90901813	90901907	4485636	0	+	0.478723	(0.476,0.515]	chr10	412927	13	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	RPP30	ENSG00000148688.14	ENST00000413330.5:ENST00000371703.8:ENST00000480406.6:ENST00000489806.5:ENST00000470933.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	27	2	2.28264	3.3145599999999997	4.34648	0.0534132	0.0193566	0.179876	0.108861
chr14	102323412	102323511	5822215	0	+	0.50505	(0.476,0.515]	chr14	552417	30	INTRON	INTRON	ZNF839	ENSG00000022976.16	ENST00000558850.5:ENST00000559185.5:ENST00000442396.7:ENST00000559098.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	27	2	2.28264	3.3145599999999997	4.34648	0.0534132	0.0193566	0.179876	0.108861
chr17	40407048	40407146	6768258	0	-	0.510204	(0.476,0.515]	chr17	665954	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TOP2A	ENSG00000131747.15	ENST00000423485.6	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	2.28264	3.3145599999999997	4.34648	0.0534132	0.0193566	0.179876	0.108861
chr17	44429080	44429179	6780084	0	-	0.484848	(0.476,0.515]	chr17	668649	42	INTRON	INTRON	GPATCH8	ENSG00000186566.13	ENST00000591680.6:ENST00000335500.8:ENST00000635257.1:ENST00000587228.5:ENST00000585614.1:ENST00000590041.5:ENST00000586265.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	27	2	2.28264	3.3145599999999997	4.34648	0.0534132	0.0193566	0.179876	0.108861
chr20	35018515	35018614	7332154	0	-	0.515152	(0.476,0.515]	chr20	746923	20	INTRON	INTRON	TRPC4AP	ENSG00000100991.12	ENST00000252015.3:ENST00000451813.6	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	2.28264	3.3145599999999997	4.34648	0.0534132	0.0193566	0.179876	0.108861
chr4	128067791	128067891	2042659	0	+	0.48	(0.476,0.515]	chr4	202845	52	INTRON	INTRON	LARP1B	ENSG00000138709.19	ENST00000512292.5:ENST00000326639.11:ENST00000508819.5:ENST00000394288.7:ENST00000432347.6:ENST00000649983.1:ENST00000650359.1:ENST00000648358.1	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	2.28264	3.3145599999999997	4.34648	0.0534132	0.0193566	0.179876	0.108861
chr6	42583470	42583570	2865252	0	+	0.49	(0.476,0.515]	chr6	271020	91	INTRON	INTRON	UBR2	ENSG00000024048.11	ENST00000372899.6:ENST00000372901.2:ENST00000372903.6	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	2.28264	3.3145599999999997	4.34648	0.0534132	0.0193566	0.179876	0.108861
chr7	2184670	2184770	3466449	0	-	0.51	(0.476,0.515]	chr7	324058	94	INTRON	INTRON	MAD1L1	ENSG00000002822.16	ENST00000406869.5:ENST00000399654.6:ENST00000402746.5:ENST00000265854.12:ENST00000464742.5:ENST00000459731.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	27	2	2.28264	3.3145599999999997	4.34648	0.0534132	0.0193566	0.179876	0.108861
chr7	10497538	10497638	3481754	0	-	0.49	(0.476,0.515]	chr7	325766	444	INTRON	INTRON	MGC4859	ENSG00000283117.1	ENST00000634803.1	lncRNA	lncRNA	lncRNA	lncRNA	1	27	2	2.28264	3.3145599999999997	4.34648	0.0534132	0.0193566	0.179876	0.108861
chr9	88398208	88398308	4152144	0	+	0.48	(0.476,0.515]	chr9	378721	84	INTRON	INTRON	SPIN1	ENSG00000106723.17	ENST00000485804.5:ENST00000469017.6:ENST00000375859.4:ENST00000462844.5:ENST00000485565.6:ENST00000483785.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	27	2	2.28264	3.3145599999999997	4.34648	0.0534132	0.0193566	0.179876	0.108861
chr1	39573647	39573744	427765	0	-	0.484536	(0.476,0.515]	chr1	51951	12	EXON_MRNA	EXON_MRNA:INTRON	PABPC4	ENSG00000090621.15	ENST00000677006.1:ENST00000372858.8:ENST00000372856.7:ENST00000372857.7:ENST00000372862.7:ENST00000676523.1:ENST00000677548.1:ENST00000678980.1:ENST00000677244.1:ENST00000677609.1:ENST00000679246.1:ENST00000678287.1:ENST00000678625.1:ENST00000470443.6:ENST00000451091.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	39	2	1.92984	3.3145100000000003	4.69918	0.0466474	0.00400966	0.151522	0.057767
chrX	9535334	9535434	7619360	0	+	0.48	(0.476,0.515]	chrX	779953	3	SS5_PROX	SS5_PROX:INTRON	TBL1X	ENSG00000101849.18	ENST00000407597.7:ENST00000380961.5:ENST00000424279.6:ENST00000645353.2:ENST00000422314.5:ENST00000645686.1:ENST00000646640.1:ENST00000647172.1:ENST00000452824.5	protein_coding	protein_coding	protein_coding	protein_coding	2	39	2	1.92984	3.3145100000000003	4.69918	0.0466474	0.00400966	0.151522	0.057767
chrX	154706342	154706442	7914869	0	-	0.48	(0.476,0.515]	chrX	806091	59	INTRON	INTRON	GAB3	ENSG00000160219.12	ENST00000496390.5:ENST00000424127.3:ENST00000369575.7:ENST00000369568.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	39	2	1.92984	3.3145100000000003	4.69918	0.0466474	0.00400966	0.151522	0.057767
chr14	101763170	101763270	5818508	0	+	0.41	(0.408,0.44]	chr14	551812	2	SS5_PROX	SS5_PROX:INTRON	PPP2R5C	ENSG00000078304.20	ENST00000694906.1:ENST00000422945.6:ENST00000554442.5:ENST00000556068.5:ENST00000556260.6:ENST00000328724.9:ENST00000554504.1:ENST00000553890.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	247	2	3.29159	3.31451	3.33743	2.07847e-5	1.12585e-6	0.00371585	6.08877e-4
chr6	85579117	85579216	3150795	0	-	0.474747	(0.44,0.476]	chr6	293837	44	INTRON	INTRON	ENSG00000271793:SNX14	ENSG00000271793.2:ENSG00000135317.14	ENST00000682083.1:ENST00000683074.1:ENST00000681965.1:ENST00000682171.1:ENST00000684150.1:ENST00000683785.1:ENST00000682497.1:ENST00000684647.1:ENST00000683643.1:ENST00000682023.1:ENST00000682022.1:ENST00000683542.1:ENST00000683126.1:ENST00000683857.1:ENST00000683898.1:ENST00000682854.1:ENST00000682491.1:ENST00000682174.1:ENST00000684239.1:ENST00000682939.1:ENST00000684570.1:ENST00000682057.1:ENST00000682878.1:ENST00000683880.1:ENST00000684422.1:ENST00000682504.1:ENST00000683726.1:ENST00000684680.1:ENST00000683196.1:ENST00000683458.1:ENST00000683803.1:ENST00000684281.1:ENST00000682991.1:ENST00000683754.1:ENST00000683481.1:ENST00000682455.1:ENST00000682034.1:ENST00000684451.1:ENST00000683583.1:ENST00000682776.1:ENST00000683873.1:ENST00000683878.1:ENST00000683195.1:ENST00000682995.1:ENST00000682374.1:ENST00000683698.1:ENST00000682454.1:ENST00000682694.1:ENST00000682412.1:ENST00000682682.1:ENST00000346348.7:ENST00000314673.8:ENST00000682633.1:ENST00000683085.1:ENST00000682688.1:ENST00000684319.1:ENST00000683577.1:ENST00000682709.1:ENST00000684299.1:ENST00000682133.1:ENST00000682594.1:ENST00000683473.1:ENST00000682106.1:ENST00000683364.1:ENST00000683436.1:ENST00000684220.1:ENST00000683909.1:ENST00000684118.1:ENST00000681981.1:ENST00000682738.1:ENST00000509338.6:ENST00000684717.1:ENST00000682660.1:ENST00000683073.1:ENST00000515216.6:ENST00000684581.1:ENST00000683479.1:ENST00000682464.1:ENST00000684108.1:ENST00000682514.1:ENST00000684017.1:ENST00000684273.1:ENST00000513865.5:ENST00000505648.5:ENST00000508980.5:ENST00000369627.6:ENST00000508658.6:ENST00000683097.1:ENST00000683541.1:ENST00000683759.1:ENST00000369635.7:ENST00000684462.1:ENST00000682168.1:ENST00000513869.2:ENST00000514419.6:ENST00000683999.1:ENST00000503906.1:ENST00000683727.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	60	2	3.26669	3.3145	3.36231	0.00305435	0.00161678	0.0493883	0.0369204
chr7	40095180	40095280	3312100	0	+	0.33	(0.32,0.35]	chr7	307582	3	UTR3	UTR3:EXON_MRNA	CDK13	ENSG00000065883.17	ENST00000340829.10:ENST00000181839.10:ENST00000646039.1:ENST00000643859.1:ENST00000643915.1:ENST00000644221.1:ENST00000644561.1:ENST00000645826.1:ENST00000465643.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	44	2	1.83416	3.3144899999999997	4.79482	0.0631198	0.00447781	0.176946	0.0610799
chr9	124406918	124407017	4346572	0	-	0.424242	(0.408,0.44]	chr9	399181	11	INTRON	INTRON	PSMB7	ENSG00000136930.13	ENST00000259457.8:ENST00000498485.5:ENST00000441097.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	44	2	1.8749	3.3144400000000003	4.75398	0.0264246	0.00703931	0.133676	0.0718189
chr17	51181293	51181393	6797060	0	-	0.38	(0.378,0.408]	chr17	671035	2	INTRON	INTRON	MBTD1	ENSG00000011258.16	ENST00000586178.6:ENST00000415868.5	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	2.53503	3.31441	4.09379	0.0319942	0.023912	0.13174	0.129075
chr19	11943271	11943371	7019935	0	+	0.39	(0.378,0.408]	chr19	697884	176	INTRON	INTRON	ZNF700	ENSG00000196757.8	ENST00000622593.4:ENST00000254321.10	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	2.53503	3.31441	4.09379	0.0319942	0.023912	0.13174	0.129075
chr1	169828508	169828593	252422	0	+	0.352941	(0.35,0.378]	chr1	29920	3	INTRON	INTRON	C1orf112	ENSG00000000460.17	ENST00000498289.5:ENST00000359326.9:ENST00000459772.5:ENST00000286031.10:ENST00000413811.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	87	2	3.14947	3.3144	3.47933	0.0015613	4.50721e-4	0.0360352	0.0192381
chr1	183494745	183494844	273730	0	+	0.424242	(0.408,0.44]	chr1	32019	205	INTRON	INTRON	SMG7	ENSG00000116698.22	ENST00000440812.7:ENST00000367537.7:ENST00000688051.1:ENST00000685780.1:ENST00000508461.5:ENST00000347615.6:ENST00000419169.5:ENST00000444547.6:ENST00000507469.5:ENST00000515829.6:ENST00000367538.1:ENST00000502375.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	27	2	2.3975	3.31423	4.23096	0.040266	0.0278028	0.161534	0.123904
chr1	235258304	235258401	663162	0	-	0.42268	(0.408,0.44]	chr1	78546	7	INTRON	INTRON	ARID4B	ENSG00000054267.22	ENST00000349213.7:ENST00000366603.6:ENST00000264183.9:ENST00000421364.5:ENST00000491632.5:ENST00000418304.1:ENST00000466653.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	27	2	2.3975	3.31423	4.23096	0.040266	0.0278028	0.161534	0.123904
chr13	41348147	41348247	5474594	0	+	0.42	(0.408,0.44]	chr13	524481	110	INTRON	INTRON	NAA16	ENSG00000172766.19	ENST00000379406.8:ENST00000403412.7:ENST00000476980.5:ENST00000464857.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	27	2	2.3975	3.31423	4.23096	0.040266	0.0278028	0.161534	0.123904
chr15	27209360	27209460	5984537	0	+	0.43	(0.408,0.44]	chr15	569164	1822	INTRON	INTRON	GABRG3	ENSG00000182256.13	ENST00000615808.5:ENST00000555083.5	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	2.3975	3.31423	4.23096	0.040266	0.0278028	0.161534	0.123904
chr17	35698423	35698523	6600672	0	+	0.41	(0.408,0.44]	chr17	642348	152	INTRON	INTRON	AP2B1	ENSG00000006125.18	ENST00000621914.4:ENST00000620039.4:ENST00000616681.4:ENST00000610402.5:ENST00000612116.5:ENST00000618940.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	27	2	2.3975	3.31423	4.23096	0.040266	0.0278028	0.161534	0.123904
chr17	43132723	43132823	6613361	0	+	0.41	(0.408,0.44]	chr17	644736	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NBR2	ENSG00000198496.12	ENST00000657841.1:ENST00000460115.5:ENST00000356906.7:ENST00000467245.5	lncRNA	lncRNA	lncRNA	lncRNA	1	27	2	2.3975	3.31423	4.23096	0.040266	0.0278028	0.161534	0.123904
chr17	63721307	63721406	6811468	0	-	0.424242	(0.408,0.44]	chr17	673105	23	INTRON	INTRON	STRADA	ENSG00000266173.7	ENST00000640870.1:ENST00000639835.1:ENST00000638708.1:ENST00000336174.12:ENST00000375840.9:ENST00000640999.1:ENST00000245865.10:ENST00000638702.1:ENST00000447001.8:ENST00000640979.1:ENST00000392950.9:ENST00000640086.1:ENST00000640679.1:ENST00000638276.1:ENST00000638888.1:ENST00000640827.1:ENST00000640397.1:ENST00000638698.1:ENST00000638193.1:ENST00000582137.6:ENST00000580039.6:ENST00000639521.1:ENST00000579340.5:ENST00000578801.6:ENST00000640174.1:ENST00000638309.1:ENST00000640183.1:ENST00000639135.1:ENST00000578008.6:ENST00000581243.6:ENST00000640741.1:ENST00000639192.1:ENST00000640707.1:ENST00000639603.1:ENST00000638718.1:ENST00000581505.6:ENST00000577375.5:ENST00000579549.6:ENST00000639816.1:ENST00000580338.5:ENST00000639778.1:ENST00000582030.5:ENST00000639164.1:ENST00000580288.2:ENST00000584110.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	27	2	2.3975	3.31423	4.23096	0.040266	0.0278028	0.161534	0.123904
chr17	66347849	66347949	6662750	0	+	0.43	(0.408,0.44]	chr17	650324	79	INTRON	INTRON	PRKCA	ENSG00000154229.12	ENST00000413366.8:ENST00000578063.5:ENST00000284384.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	27	2	2.3975	3.31423	4.23096	0.040266	0.0278028	0.161534	0.123904
chr19	5594378	5594478	7124060	0	-	0.42	(0.408,0.44]	chr19	716979	2	SS3_PROX	SS3_PROX:INTRON	SAFB2	ENSG00000130254.12	ENST00000252542.9	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	2.3975	3.31423	4.23096	0.040266	0.0278028	0.161534	0.123904
chr22	21935963	21936060	7561562	0	-	0.43299	(0.408,0.44]	chr22	773427	19	EXON_MRNA	EXON_MRNA:INTRON	PPM1F	ENSG00000100034.14	ENST00000263212.10:ENST00000407142.5:ENST00000397495.8:ENST00000445205.1:ENST00000623652.1:ENST00000424647.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	27	2	2.3975	3.31423	4.23096	0.040266	0.0278028	0.161534	0.123904
chr3	60248628	60248728	1712100	0	-	0.41	(0.408,0.44]	chr3	176138	1679	INTRON	INTRON	FHIT	ENSG00000189283.10	ENST00000492590.6:ENST00000476844.5:ENST00000468189.5:ENST00000488467.5	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	2.3975	3.31423	4.23096	0.040266	0.0278028	0.161534	0.123904
chr6	15251562	15251662	2823001	0	+	0.43	(0.408,0.44]	chr6	265190	22	INTRON	INTRON	JARID2	ENSG00000008083.14	ENST00000341776.7:ENST00000397311.4	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	2.3975	3.31423	4.23096	0.040266	0.0278028	0.161534	0.123904
chr1	84659747	84659845	496460	0	-	0.367347	(0.35,0.378]	chr1	58854	9	INTRON	INTRON	SSX2IP	ENSG00000117155.17	ENST00000342203.8:ENST00000437941.6:ENST00000481102.5:ENST00000476905.6:ENST00000605755.5:ENST00000603677.1:ENST00000460500.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	53	2	1.64283	3.31422	4.98561	0.034896	0.00474226	0.148998	0.0600445
chr3	43389836	43389936	1673111	0	-	0.49	(0.476,0.515]	chr3	170966	166	INTRON	INTRON	ANO10	ENSG00000160746.13	ENST00000292246.8:ENST00000350459.8:ENST00000396091.7:ENST00000414522.6:ENST00000451430.6:ENST00000448045.1	protein_coding	protein_coding	protein_coding	protein_coding	3	44	2	1.86014	3.3142050000000003	4.76827	0.0277606	0.00600704	0.137011	0.0674604
chr11	46839829	46839929	4948702	0	-	0.45	(0.44,0.476]	chr11	463857	131	INTRON	INTRON	CKAP5	ENSG00000175216.15	ENST00000529230.6:ENST00000312055.9:ENST00000525248.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	82	2	2.47339	3.314175	4.15496	0.0090196	3.09831e-5	0.080367	0.00443703
chr14	37049189	37049289	5876779	0	-	0.29	(0.28,0.32]	chr14	558013	1738	INTRON	INTRON	SLC25A21	ENSG00000183032.12	ENST00000331299.6:ENST00000555449.5:ENST00000557611.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	42	2	1.96475	3.31417	4.66359	0.0428385	0.0193496	0.162255	0.108861
chr7	152196308	152196407	3678855	0	-	0.282828	(0.28,0.32]	chr7	341506	4	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000683200.1:ENST00000682283.1:ENST00000473186.5:ENST00000679882.1:ENST00000680969.1:ENST00000681033.1:ENST00000682176.1:ENST00000679645.1:ENST00000683185.1:ENST00000683254.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	42	2	1.96475	3.31417	4.66359	0.0428385	0.0193496	0.162255	0.108861
chr10	7212320	7212420	4550936	0	-	0.43	(0.408,0.44]	chr10	420188	60	INTRON	INTRON	SFMBT2	ENSG00000198879.13	ENST00000397167.6:ENST00000361972.8:ENST00000684547.1:ENST00000683762.1:ENST00000673876.1:ENST00000682896.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	27	2	2.2957	3.31404	4.33238	0.0516458	0.0218901	0.176696	0.11491
chr10	92000543	92000643	4489519	0	+	0.44	(0.408,0.44]	chr10	413421	24	INTRON	INTRON	BTAF1	ENSG00000095564.15	ENST00000265990.12	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	2.2957	3.31404	4.33238	0.0516458	0.0218901	0.176696	0.11491
chr11	77776172	77776272	4995531	0	-	0.41	(0.408,0.44]	chr11	472047	111	INTRON	INTRON	RSF1	ENSG00000048649.14	ENST00000308488.11:ENST00000528095.5:ENST00000440064.2:ENST00000467567.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	27	2	2.2957	3.31404	4.33238	0.0516458	0.0218901	0.176696	0.11491
chr15	73563956	73564056	6220478	0	-	0.42	(0.408,0.44]	chr15	593882	3	INTRON	INTRON	NPTN	ENSG00000156642.17	ENST00000351217.10:ENST00000345330.9:ENST00000565325.5:ENST00000562924.5:ENST00000563691.5	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	2.2957	3.31404	4.33238	0.0516458	0.0218901	0.176696	0.11491
chr15	87580291	87580391	6255357	0	-	0.44	(0.408,0.44]	chr15	596826	369	INTRON	INTRON	ENSG00000259560	ENSG00000259560.2	ENST00000665121.1:ENST00000560439.1	lncRNA	lncRNA	lncRNA	lncRNA	1	27	2	2.2957	3.31404	4.33238	0.0516458	0.0218901	0.176696	0.11491
chr2	121496397	121496497	1220848	0	-	0.44	(0.408,0.44]	chr2	129999	62	INTRON	INTRON	CLASP1	ENSG00000074054.20	ENST00000263710.8:ENST00000397587.7:ENST00000541377.5:ENST00000409078.8:ENST00000455322.6:ENST00000452274.6:ENST00000418989.5:ENST00000449975.1:ENST00000474065.5:ENST00000480007.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	27	2	2.2957	3.31404	4.33238	0.0516458	0.0218901	0.176696	0.11491
chr2	174239642	174239742	1270766	0	-	0.41	(0.408,0.44]	chr2	134298	98	INTRON	INTRON	OLA1	ENSG00000138430.16	ENST00000284719.8:ENST00000344357.9:ENST00000428402.6:ENST00000409546.5:ENST00000427472.2	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	2.2957	3.31404	4.33238	0.0516458	0.0218901	0.176696	0.11491
chr20	35482343	35482443	7262284	0	+	0.43	(0.408,0.44]	chr20	737887	18	INTRON	INTRON	CEP250	ENSG00000126001.16	ENST00000397527.6	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	2.2957	3.31404	4.33238	0.0516458	0.0218901	0.176696	0.11491
chr22	24173878	24173975	7486829	0	+	0.412371	(0.408,0.44]	chr22	763959	6	INTRON	INTRON	CABIN1	ENSG00000099991.18	ENST00000263119.10:ENST00000617531.4:ENST00000405822.6:ENST00000398319.6:ENST00000337989.11	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	2.2957	3.31404	4.33238	0.0516458	0.0218901	0.176696	0.11491
chr7	132949833	132949933	3644561	0	-	0.44	(0.408,0.44]	chr7	338848	625	INTRON	INTRON	CHCHD3	ENSG00000106554.13	ENST00000262570.10:ENST00000448878.6:ENST00000496427.5:ENST00000423635.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	27	2	2.2957	3.31404	4.33238	0.0516458	0.0218901	0.176696	0.11491
chr2	131292186	131292276	866306	0	+	0.566667	(0.515,0.57]	chr2	97303	5	EXON_LNCRNA	EXON_LNCRNA:INTRON	PLEKHB2:FAR2P4	ENSG00000115762.17:ENSG00000231431.7	ENST00000404460.5:ENST00000560285.5:ENST00000416266.2	protein_coding	protein_coding	protein_coding:transcribed_unprocessed_pseudogene	protein_coding:processed_transcript	2	58	2	2.74772	3.3138750000000003	3.88003	0.0142192	1.52864e-4	0.103638	0.0112857
chr16	84089504	84089601	6531923	0	-	0.402062	(0.378,0.408]	chr16	632892	17	INTRON	INTRON	MBTPS1	ENSG00000140943.18	ENST00000343411.8:ENST00000569770.5:ENST00000563231.5:ENST00000565863.1:ENST00000570012.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	37	2	2.04292	3.3135950000000003	4.58427	0.0326035	0.0128325	0.145164	0.0926667
chr6	147718549	147718649	2991182	0	+	0.4	(0.378,0.408]	chr6	280167	257	INTRON	INTRON	ENSG00000227681	ENSG00000227681.5	ENST00000427015.1:ENST00000432506.5:ENST00000442094.5:ENST00000434985.1	lncRNA	lncRNA	lncRNA	lncRNA	2	37	2	2.04292	3.3135950000000003	4.58427	0.0326035	0.0128325	0.145164	0.0926667
chr5	146490920	146491020	2515957	0	+	0.29	(0.28,0.32]	chr5	240369	69	INTRON	INTRON	TCERG1	ENSG00000113649.13	ENST00000296702.9:ENST00000679501.2:ENST00000394421.7:ENST00000549332.1:ENST00000515203.5:ENST00000506524.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	47	2	1.86684	3.3135749999999997	4.76031	0.0605813	0.00656106	0.171122	0.0735539
chr3	9999521	9999620	1362097	0	+	0.262626	[0,0.28]	chr3	143402	53	INTRON	INTRON	EMC3-AS1	ENSG00000180385.9	ENST00000692142.1:ENST00000366264.6:ENST00000693066.1:ENST00000326237.3:ENST00000440568.1:ENST00000424904.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	4	139	2	2.62887	3.3135399999999997	3.99821	0.00205554	3.7284e-4	0.0420839	0.0179087
chr3	196048485	196048585	1897190	0	-	0.53	(0.515,0.57]	chr3	189884	209	INTRON	INTRON	TFRC	ENSG00000072274.13	ENST00000426789.5	protein_coding	protein_coding	protein_coding	protein_coding	5	97	2	2.23927	3.313435	4.3876	0.00328621	8.75303e-6	0.0527031	0.00227522
chr16	69698336	69698435	6381357	0	+	0.232323	[0,0.28]	chr16	613255	21	UTR3	UTR3:EXON_MRNA	NFAT5	ENSG00000102908.22	ENST00000426654.6:ENST00000349945.7:ENST00000354436.6:ENST00000627621.3:ENST00000650987.1:ENST00000393742.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	85	2	3.04867	3.31338	3.57809	0.0104221	0.00109779	0.085482	0.0303708
chr5	176488352	176488450	2552574	0	+	0.27551	[0,0.28]	chr5	243682	15	INTRON	INTRON	FAF2	ENSG00000113194.13	ENST00000261942.7:ENST00000510446.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	85	2	3.04867	3.31338	3.57809	0.0104221	0.00109779	0.085482	0.0303708
chr3	49775584	49775684	1694774	0	-	0.52	(0.515,0.57]	chr3	173818	268	INTRON	INTRON	IP6K1	ENSG00000176095.12	ENST00000321599.9:ENST00000395238.5:ENST00000613416.4:ENST00000468463.5:ENST00000460540.1:ENST00000498149.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	52	2	3.25547	3.31336	3.37125	0.00261721	0.00136343	0.0455413	0.0339121
chr4	497855	497955	2093160	0	-	0.55	(0.515,0.57]	chr4	206795	238	INTRON	INTRON	ZNF721	ENSG00000182903.16	ENST00000511833.3:ENST00000338977.5	protein_coding	protein_coding	protein_coding	protein_coding	2	52	2	3.25547	3.31336	3.37125	0.00261721	0.00136343	0.0455413	0.0339121
chr10	124785946	124786046	4712488	0	-	0.31	(0.28,0.32]	chr10	434817	108	INTRON	INTRON	EEF1AKMT2	ENSG00000203791.15	ENST00000652548.1:ENST00000466270.5:ENST00000368836.7:ENST00000464099.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	58	2	1.47299	3.313285	5.15358	0.0597769	0.0052282	0.189982	0.0633615
chr1	19244195	19244286	387161	0	-	0.395604	(0.378,0.408]	chr1	46251	3	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	EMC1	ENSG00000127463.16	ENST00000477853.6:ENST00000688219.1:ENST00000690732.1:ENST00000690451.1:ENST00000688667.1:ENST00000685099.1:ENST00000685594.1:ENST00000690823.1:ENST00000692207.1:ENST00000688332.1:ENST00000375199.7:ENST00000375208.7:ENST00000486405.2:ENST00000688538.1:ENST00000488681.2:ENST00000475079.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	37	2	1.81685	3.3132650000000003	4.80968	0.0597868	0.00679828	0.189982	0.0711802
chr15	40193247	40193347	6001575	0	+	0.38	(0.378,0.408]	chr15	570623	58	INTRON	INTRON	BUB1B	ENSG00000156970.13	ENST00000412359.7:ENST00000287598.11:ENST00000559733.5:ENST00000557848.1:ENST00000559772.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	37	2	1.81685	3.3132650000000003	4.80968	0.0597868	0.00679828	0.189982	0.0711802
chr16	16514213	16514313	6311004	0	+	0.38	(0.378,0.408]	chr16	604098	142	INTRON	INTRON	ENSG00000260126	ENSG00000260126.2	ENST00000567465.2	lncRNA	lncRNA	lncRNA	lncRNA	2	37	2	1.81685	3.3132650000000003	4.80968	0.0597868	0.00679828	0.189982	0.0711802
chr22	23186617	23186716	7483264	0	+	0.40404	(0.378,0.408]	chr22	763531	40	INTRON	INTRON	BCR	ENSG00000186716.21	ENST00000479188.5:ENST00000359540.7:ENST00000305877.13	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	37	2	1.81685	3.3132650000000003	4.80968	0.0597868	0.00679828	0.189982	0.0711802
chr5	154867892	154867992	2527772	0	+	0.4	(0.378,0.408]	chr5	241752	1	SS5_PROX	SS5_PROX:INTRON	CNOT8	ENSG00000155508.14	ENST00000523698.5:ENST00000517876.5:ENST00000520472.5:ENST00000519211.5:ENST00000522458.5:ENST00000403027.6:ENST00000521450.5:ENST00000519903.5:ENST00000517568.5:ENST00000524105.5:ENST00000285896.11:ENST00000521583.5:ENST00000520671.5:ENST00000519404.5:ENST00000521729.5:ENST00000518775.5:ENST00000522644.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	37	2	1.81685	3.3132650000000003	4.80968	0.0597868	0.00679828	0.189982	0.0711802
chr16	47515901	47516001	6343851	0	+	0.39	(0.378,0.408]	chr16	608878	3	SS5_PROX	SS5_PROX:INTRON	PHKB	ENSG00000102893.17	ENST00000566037.6:ENST00000566044.5:ENST00000299167.12:ENST00000696809.1:ENST00000323584.10:ENST00000565424.2:ENST00000567402.5:ENST00000570047.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	84	2	2.86464	3.3131950000000003	3.76175	0.00215581	2.68579e-4	0.0417866	0.0145349
chr17	62055395	62055495	6810782	0	-	0.2	[0,0.28]	chr17	672952	23	INTRON	INTRON	MED13	ENSG00000108510.10	ENST00000397786.7	protein_coding	protein_coding	protein_coding	protein_coding	2	49	2	2.33097	3.3131649999999997	4.29536	0.0590175	0.0158969	0.167915	0.109464
chr1	146409902	146409982	211573	0	+	0.4375	(0.408,0.44]	chr1	23262	1	EXON_SMALL	EXON_SMALL	RNVU1-25	ENSG00000274428.1	ENST00000620022.1	snRNA	snRNA	snRNA	snRNA	2	48	2	2.64944	3.313115	3.97679	0.0299485	0.00481947	0.142135	0.060277
chr20	31785113	31785212	7254131	0	+	0.40404	(0.378,0.408]	chr20	736799	8	INTRON	INTRON	TPX2	ENSG00000088325.16	ENST00000340513.4:ENST00000300403.11	protein_coding	protein_coding	protein_coding	protein_coding	7	67	2	1.2488	3.313095	5.37739	0.0562531	0.0010014	0.184145	0.0288906
chr12	68728374	68728471	5162286	0	+	0.463918	(0.44,0.476]	chr12	488760	6	INTRON	INTRON	NUP107	ENSG00000111581.10	ENST00000378905.6:ENST00000229179.9:ENST00000535718.5:ENST00000539906.5:ENST00000538993.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	41	2	2.19078	3.313015	4.43525	0.0226089	0.00897296	0.117489	0.0849778
chr14	68005210	68005310	5767229	0	+	0.47	(0.44,0.476]	chr14	547066	45	INTRON	INTRON	RAD51B	ENSG00000182185.19	ENST00000487861.5:ENST00000471583.6:ENST00000479335.5:ENST00000487270.5:ENST00000488612.5:ENST00000553595.5:ENST00000497460.5:ENST00000492236.5:ENST00000554244.5:ENST00000478014.5:ENST00000469165.6:ENST00000460526.5:ENST00000468382.5:ENST00000557045.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	41	2	2.19078	3.313015	4.43525	0.0226089	0.00897296	0.117489	0.0849778
chr1	8536021	8536121	370956	0	-	0.5	(0.476,0.515]	chr1	43499	101	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000400907.6:ENST00000656437.1:ENST00000659924.1:ENST00000480342.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	29	2	2.40608	3.31286	4.21964	0.0425709	0.0167715	0.148082	0.110511
chr20	35410451	35410550	7335196	0	-	0.494949	(0.476,0.515]	chr20	747206	4	INTRON	INTRON	UQCC1	ENSG00000101019.22	ENST00000374380.6:ENST00000374394.7:ENST00000374384.6:ENST00000359226.6:ENST00000349714.9:ENST00000457259.5:ENST00000374385.10:ENST00000453855.5:ENST00000424405.5:ENST00000443429.5:ENST00000438533.5:ENST00000397554.5:ENST00000491125.5:ENST00000491040.5:ENST00000397553.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	29	2	2.40608	3.31286	4.21964	0.0425709	0.0167715	0.148082	0.110511
chr3	180924070	180924169	1568719	0	+	0.515152	(0.476,0.515]	chr3	162365	81	INTRON	INTRON	FXR1	ENSG00000114416.18	ENST00000469882.5:ENST00000484790.5:ENST00000465551.5:ENST00000305586.11:ENST00000475315.5:ENST00000491674.1:ENST00000357559.9:ENST00000468861.5:ENST00000491062.5:ENST00000479176.5:ENST00000445140.6:ENST00000472339.5:ENST00000484958.5:ENST00000480918.5:ENST00000484042.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	29	2	2.40608	3.31286	4.21964	0.0425709	0.0167715	0.148082	0.110511
chr5	150020982	150021082	2518868	0	+	0.48	(0.476,0.515]	chr5	240788	19	INTRON	INTRON	HMGXB3	ENSG00000113716.13	ENST00000613459.4:ENST00000503427.5:ENST00000502717.6	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	2.40608	3.31286	4.21964	0.0425709	0.0167715	0.148082	0.110511
chr15	92883676	92883768	6103512	0	+	0.369565	(0.35,0.378]	chr15	581354	2	EXON_LNCRNA	EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CHASERR:ENSG00000279765	ENSG00000272888.8:ENSG00000279765.3	ENST00000653163.1:ENST00000557682.6:ENST00000553829.1:ENST00000556895.5:ENST00000554669.6:ENST00000554894.5:ENST00000557147.1:ENST00000629685.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	19	505	2	3.13549	3.31275	3.49001	1.05006e-5	2.89699e-8	0.00253642	6.5861e-5
chr8	100703855	100703954	4005390	0	-	0.535354	(0.515,0.57]	chr8	366565	6	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PABPC1	ENSG00000070756.17	ENST00000518293.5:ENST00000677140.1:ENST00000677787.1:ENST00000678709.1:ENST00000676662.1:ENST00000677765.1:ENST00000677892.1:ENST00000522720.2:ENST00000520804.2:ENST00000521865.6:ENST00000677478.1:ENST00000677380.1:ENST00000520142.2:ENST00000677775.1:ENST00000678954.1:ENST00000676655.1:ENST00000676976.1:ENST00000678290.1:ENST00000318607.10:ENST00000520868.5:ENST00000679197.1:ENST00000519100.6:ENST00000519004.5:ENST00000677285.1:ENST00000522387.5:ENST00000523636.5:ENST00000517990.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	196	2	2.87271	3.312735	3.75276	1.16749e-5	1.94679e-6	0.00252017	9.52502e-4
chr8	132780809	132780908	3865223	0	+	0.373737	(0.35,0.378]	chr8	355809	25	INTRON	INTRON	PHF20L1	ENSG00000129292.21	ENST00000622263.4:ENST00000220847.8:ENST00000395383.5:ENST00000361997.9:ENST00000395379.5:ENST00000395386.7:ENST00000485595.5:ENST00000315808.14:ENST00000337920.8:ENST00000395376.5:ENST00000522580.5:ENST00000395390.6:ENST00000486199.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	66	2	3.21677	3.31264	3.40851	0.00313804	0.00205747	0.0514466	0.0409869
chr1	35187351	35187411	420541	0	-	0.233333	[0,0.28]	chr1	50663	1	SS3_PROX	SS3_PROX:INTRON	SFPQ	ENSG00000116560.12	ENST00000470472.5:ENST00000460428.5:ENST00000696553.1:ENST00000357214.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	40	2	2.54624	3.312625	4.07901	0.0494049	0.0388449	0.174117	0.143072
chr17	48575307	48575406	6791018	0	-	0.383838	(0.378,0.408]	chr17	669986	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	HOXB3	ENSG00000120093.12	ENST00000498678.6:ENST00000472863.5:ENST00000460160.5:ENST00000489475.5:ENST00000476342.1:ENST00000465120.3:ENST00000464266.1:ENST00000552000.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	185	2	2.77419	3.3124149999999997	3.85064	4.01914e-4	9.11492e-7	0.0185763	5.40577e-4
chr11	76489521	76489621	4835950	0	+	0.31	(0.28,0.32]	chr11	451075	163	INTRON	INTRON	EMSY	ENSG00000158636.17	ENST00000427574.6:ENST00000695367.1:ENST00000334736.7:ENST00000524490.5:ENST00000533972.5:ENST00000525038.5:ENST00000524767.5:ENST00000525919.5:ENST00000533248.5:ENST00000529032.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	31	2	2.38101	3.312105	4.2432	0.0479043	0.0456017	0.164236	0.153019
chr12	133056653	133056753	5252769	0	+	0.3	(0.28,0.32]	chr12	499684	3	SS3_PROX	SS3_PROX:INTRON	ZNF84	ENSG00000198040.11	ENST00000392319.6:ENST00000543758.5:ENST00000540031.5:ENST00000539354.6:ENST00000327668.11:ENST00000542874.5:ENST00000535439.2:ENST00000543124.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	31	2	2.38101	3.312105	4.2432	0.0479043	0.0456017	0.164236	0.153019
chr2	181030413	181030513	936470	0	+	0.29	(0.28,0.32]	chr2	102627	405	INTRON	INTRON	UBE2E3	ENSG00000170035.16	ENST00000602303.5:ENST00000602959.5:ENST00000602479.5:ENST00000392415.6:ENST00000602291.5:ENST00000410062.9:ENST00000602499.5:ENST00000602710.5:ENST00000602762.5:ENST00000602888.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	31	2	2.38101	3.312105	4.2432	0.0479043	0.0456017	0.164236	0.153019
chr2	235741148	235741248	1043816	0	+	0.32	(0.28,0.32]	chr2	111253	1	SS5_PROX	SS5_PROX:INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1:ENST00000402604.6:ENST00000409538.5:ENST00000614409.4:ENST00000619456.4:ENST00000428334.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	31	2	2.38101	3.312105	4.2432	0.0479043	0.0456017	0.164236	0.153019
chr4	126557910	126558010	2236288	0	-	0.32	(0.28,0.32]	chr4	219023	924	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	1	31	2	2.38101	3.312105	4.2432	0.0479043	0.0456017	0.164236	0.153019
chr5	36225441	36225541	2601586	0	-	0.29	(0.28,0.32]	chr5	247295	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	NADK2	ENSG00000152620.13	ENST00000381937.9:ENST00000397338.5:ENST00000282512.7:ENST00000506945.5:ENST00000514504.5:ENST00000617628.4:ENST00000511088.1	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	2.38101	3.312105	4.2432	0.0479043	0.0456017	0.164236	0.153019
chr10	70406143	70406243	4447095	0	+	0.51	(0.476,0.515]	chr10	410345	12	INTRON	INTRON	EIF4EBP2	ENSG00000148730.7	ENST00000373218.5	protein_coding	protein_coding	protein_coding	protein_coding	5	128	2	3.30022	3.3120849999999997	3.32395	2.34553e-4	3.42965e-5	0.0140266	0.0046762
chr1	688526	688626	356833	0	-	0.36	(0.35,0.378]	chr1	41087	555	INTRON	INTRON	ENSG00000230021	ENSG00000230021.10	ENST00000419394.2:ENST00000634337.2:ENST00000635509.2:ENST00000648019.1:ENST00000440200.5	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	1	31	2	2.32443	3.3120200000000004	4.29961	0.0544216	0.0158483	0.164972	0.109464
chr1	3990345	3990445	3748	0	+	0.36	(0.35,0.378]	chr1	772	128	INTRON	INTRON	LINC02780	ENSG00000284668.2	ENST00000642026.2:ENST00000641078.1:ENST00000641562.1	lncRNA	lncRNA	lncRNA	lncRNA	1	31	2	2.32443	3.3120200000000004	4.29961	0.0544216	0.0158483	0.164972	0.109464
chr1	201846281	201846381	291925	0	+	0.36	(0.35,0.378]	chr1	33524	109	INTRON	INTRON	IPO9	ENSG00000198700.10	ENST00000464348.5:ENST00000361565.9	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	31	2	2.32443	3.3120200000000004	4.29961	0.0544216	0.0158483	0.164972	0.109464
chr12	40022804	40022904	5311319	0	-	0.36	(0.35,0.378]	chr12	505241	711	INTRON	INTRON	SLC2A13	ENSG00000151229.13	ENST00000280871.9:ENST00000380858.1	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	2.32443	3.3120200000000004	4.29961	0.0544216	0.0158483	0.164972	0.109464
chr17	75323119	75323218	6836970	0	-	0.353535	(0.35,0.378]	chr17	675701	9	INTRON	INTRON	GRB2	ENSG00000177885.15	ENST00000316615.9:ENST00000316804.10:ENST00000392562.5:ENST00000392564.5:ENST00000392563.5:ENST00000648046.1:ENST00000578961.5:ENST00000462266.1:ENST00000582582.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	31	2	2.32443	3.3120200000000004	4.29961	0.0544216	0.0158483	0.164972	0.109464
chr11	65632687	65632786	4806826	0	+	0.434343	(0.408,0.44]	chr11	446872	17	INTRON	INTRON	PCNX3	ENSG00000197136.5	ENST00000355703.4:ENST00000439247.2:ENST00000531280.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	29	2	2.18807	3.311935	4.4358	0.0708044	0.00893097	0.184528	0.0849778
chr12	132094312	132094411	5250287	0	+	0.424242	(0.408,0.44]	chr12	499298	24	INTRON	INTRON	EP400P1	ENSG00000185684.16	ENST00000407361.8:ENST00000446190.5:ENST00000690966.1:ENST00000689047.1:ENST00000454179.7:ENST00000689533.1:ENST00000688036.1:ENST00000688136.1:ENST00000488030.5:ENST00000389560.6:ENST00000689403.1:ENST00000443539.6:ENST00000392352.5:ENST00000539205.5:ENST00000332441.7	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	1	29	2	2.18807	3.311935	4.4358	0.0708044	0.00893097	0.184528	0.0849778
chr16	71754484	71754582	6513910	0	-	0.438776	(0.408,0.44]	chr16	631122	2	INTRON	INTRON	AP1G1	ENSG00000166747.13	ENST00000299980.9:ENST00000569748.5:ENST00000393512.7:ENST00000565009.5:ENST00000565642.5:ENST00000568327.5:ENST00000566179.1:ENST00000569044.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	29	2	2.18807	3.311935	4.4358	0.0708044	0.00893097	0.184528	0.0849778
chr19	40032356	40032456	7182686	0	-	0.42	(0.408,0.44]	chr19	726345	42	UTR3	UTR3:EXON_MRNA	ZNF780B	ENSG00000128000.17	ENST00000434248.6	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	2.18807	3.311935	4.4358	0.0708044	0.00893097	0.184528	0.0849778
chr4	25322492	25322592	1933461	0	+	0.43	(0.408,0.44]	chr4	194119	67	INTRON	INTRON	ZCCHC4	ENSG00000168228.16	ENST00000302874.9:ENST00000505451.5:ENST00000507760.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	29	2	2.18807	3.311935	4.4358	0.0708044	0.00893097	0.184528	0.0849778
chr5	41734937	41735036	2611330	0	-	0.434343	(0.408,0.44]	chr5	248300	28	INTRON	INTRON	OXCT1	ENSG00000083720.13	ENST00000196371.10:ENST00000512084.5:ENST00000510634.5:ENST00000509987.1:ENST00000508557.5:ENST00000503374.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	29	2	2.18807	3.311935	4.4358	0.0708044	0.00893097	0.184528	0.0849778
chr7	24833686	24833786	3504341	0	-	0.44	(0.408,0.44]	chr7	327028	2	SS5_PROX	SS5_PROX:INTRON	OSBPL3	ENSG00000070882.13	ENST00000313367.7:ENST00000409863.5:ENST00000396431.5:ENST00000409452.5:ENST00000409759.5:ENST00000409555.5:ENST00000396429.5:ENST00000409069.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	29	2	2.18807	3.311935	4.4358	0.0708044	0.00893097	0.184528	0.0849778
chr7	105309870	105309970	3603115	0	-	0.43	(0.408,0.44]	chr7	336161	29	INTRON	INTRON	SRPK2	ENSG00000135250.17	ENST00000393651.8:ENST00000482897.5:ENST00000460391.5:ENST00000462282.5:ENST00000465112.5:ENST00000482862.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	29	2	2.18807	3.311935	4.4358	0.0708044	0.00893097	0.184528	0.0849778
chr21	28939055	28939153	7436125	0	-	0.244898	[0,0.28]	chr21	758299	20	INTRON	INTRON	LTN1	ENSG00000198862.14	ENST00000614971.4:ENST00000389194.7:ENST00000361371.10	protein_coding	protein_coding	protein_coding	protein_coding	3	56	2	1.79953	3.31193	4.82433	0.0377477	0.0200334	0.156608	0.109608
chr3	39103107	39103198	1659124	0	-	0.571429	(0.57,1]	chr3	170298	1	EXON_MRNA	EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GORASP1	ENSG00000114745.15	ENST00000479927.6:ENST00000319283.8:ENST00000469471.2:ENST00000489587.2:ENST00000422110.7:ENST00000453680.6:ENST00000695445.1:ENST00000695592.1:ENST00000452389.7:ENST00000695424.1:ENST00000695442.1:ENST00000695412.1:ENST00000492064.6:ENST00000695414.1:ENST00000441302.6:ENST00000695597.1:ENST00000695594.1:ENST00000695441.1:ENST00000695446.1:ENST00000695587.1:ENST00000695430.1:ENST00000419156.6:ENST00000411813.6:ENST00000695590.1:ENST00000695595.1:ENST00000473827.6:ENST00000476334.2:ENST00000695428.1:ENST00000695429.1:ENST00000695427.1:ENST00000695426.1:ENST00000695425.1:ENST00000437458.4:ENST00000695589.1:ENST00000695588.1:ENST00000695591.1:ENST00000695431.1:ENST00000441081.2:ENST00000470910.6:ENST00000695444.1:ENST00000431601.6:ENST00000427459.4:ENST00000695416.1:ENST00000466443.1:ENST00000493751.2:ENST00000488479.1:ENST00000695417.1:ENST00000413243.4:ENST00000493938.6:ENST00000695613.1:ENST00000416741.6:ENST00000695397.1:ENST00000486133.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	24	2	1.91937	3.31182	4.70427	0.0468438	9.25341e-4	0.167716	0.0278396
chr5	54380951	54381051	2354432	0	+	0.62	(0.57,1]	chr5	227061	403	INTRON	INTRON	LINC01033	ENSG00000249069.8	ENST00000665899.1:ENST00000653566.1:ENST00000655801.1:ENST00000654906.1:ENST00000667636.1:ENST00000665869.1:ENST00000664079.1:ENST00000659703.1:ENST00000662351.1:ENST00000523194.7:ENST00000665795.1:ENST00000667992.1:ENST00000662022.1:ENST00000657771.1:ENST00000517934.1	lncRNA	lncRNA	lncRNA	lncRNA	2	24	2	1.91937	3.31182	4.70427	0.0468438	9.25341e-4	0.167716	0.0278396
chr11	61155110	61155209	4955671	0	-	0.353535	(0.35,0.378]	chr11	465541	98	INTRON	INTRON	VPS37C	ENSG00000167987.11	ENST00000301765.10:ENST00000538036.1:ENST00000536000.1:ENST00000535818.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	38	2	1.90405	3.31179	4.71953	0.0482651	0.0103314	0.171852	0.0850389
chr17	51024649	51024748	6796046	0	-	0.363636	(0.35,0.378]	chr17	670985	29	INTRON	INTRON	SPAG9	ENSG00000008294.22	ENST00000262013.12:ENST00000510283.5:ENST00000505279.5:ENST00000357122.8:ENST00000514613.5:ENST00000505173.5:ENST00000576492.1:ENST00000510855.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	38	2	1.90405	3.31179	4.71953	0.0482651	0.0103314	0.171852	0.0850389
chr15	64487605	64487705	6044358	0	+	0.43	(0.408,0.44]	chr15	575688	264	INTRON	INTRON	ZNF609	ENSG00000180357.10	ENST00000326648.5:ENST00000416172.1	protein_coding	protein_coding	protein_coding	protein_coding	4	51	2	1.79818	3.3117400000000004	4.8253	0.020428	0.0056738	0.122109	0.0653997
chr10	48311473	48311572	4431036	0	+	0.363636	(0.35,0.378]	chr10	408563	28	INTRON	INTRON	MAPK8	ENSG00000107643.17	ENST00000395611.7:ENST00000432379.5:ENST00000374189.6:ENST00000429041.6:ENST00000374179.8:ENST00000426557.5:ENST00000476134.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	39	2	2.23043	3.3117300000000003	4.39303	0.0237246	0.0187487	0.118716	0.117523
chr16	89578021	89578121	6420943	0	+	0.37	(0.35,0.378]	chr16	616335	3	SS5_PROX	SS5_PROX:INTRON	CPNE7	ENSG00000178773.15	ENST00000319518.13:ENST00000268720.9:ENST00000525982.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	39	2	2.23043	3.3117300000000003	4.39303	0.0237246	0.0187487	0.118716	0.117523
chrX	123629827	123629924	7877998	0	-	0.371134	(0.35,0.378]	chrX	802471	15	INTRON	INTRON	THOC2	ENSG00000125676.20	ENST00000245838.13:ENST00000355725.8:ENST00000491737.5	protein_coding	protein_coding	protein_coding	protein_coding	2	39	2	2.23043	3.3117300000000003	4.39303	0.0237246	0.0187487	0.118716	0.117523
chr2	32375694	32375793	730965	0	+	0.262626	[0,0.28]	chr2	84274	179	INTRON	INTRON	BIRC6	ENSG00000115760.15	ENST00000421745.7:ENST00000648282.1	protein_coding	protein_coding	protein_coding	protein_coding	3	117	2	3.24659	3.311715	3.37684	0.00570201	2.5121e-4	0.0656459	0.0140934
chr5	140493630	140493730	2503767	0	+	0.37	(0.35,0.378]	chr5	239246	62	INTRON	INTRON	ANKHD1	ENSG00000131503.21	ENST00000297183.10:ENST00000360839.7:ENST00000421134.5:ENST00000246149.10:ENST00000412116.5:ENST00000506755.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	67	2	2.78212	3.31166	3.8412	0.0168532	1.97447e-4	0.103549	0.0122531
chr16	69304789	69304888	6379010	0	+	0.434343	(0.408,0.44]	chr16	613048	40	UTR3	UTR3:EXON_MRNA:INTRON	SNTB2:ENSG00000260914	ENSG00000168807.17:ENSG00000260914.3	ENST00000336278.9:ENST00000570054.3	protein_coding	protein_coding	protein_coding	protein_coding	2	64	2	2.96007	3.311585	3.6631	0.00753901	6.21419e-4	0.0773151	0.0229151
chr1	171569532	171569631	254078	0	+	0.313131	(0.28,0.32]	chr1	30220	8	INTRON	INTRON	PRRC2C	ENSG00000117523.18	ENST00000647382.2:ENST00000367742.7:ENST00000338920.8:ENST00000426496.6:ENST00000495585.1:ENST00000644916.1	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	2.18975	3.311575	4.4334	0.0776042	0.0163355	0.196285	0.109464
chr1	174250732	174250832	258026	0	+	0.29	(0.28,0.32]	chr1	30766	1	SS5_PROX	SS5_PROX:INTRON	RABGAP1L	ENSG00000152061.24	ENST00000357444.10:ENST00000251507.8:ENST00000681986.1:ENST00000457696.1	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	2.18975	3.311575	4.4334	0.0776042	0.0163355	0.196285	0.109464
chr17	29399258	29399357	6585724	0	+	0.282828	(0.28,0.32]	chr17	640373	79	INTRON	INTRON	ENSG00000266111:TAOK1	ENSG00000266111.2:ENSG00000160551.12	ENST00000584958.2:ENST00000261716.8:ENST00000583121.5:ENST00000587277.1:ENST00000536202.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	1	34	2	2.18975	3.311575	4.4334	0.0776042	0.0163355	0.196285	0.109464
chr2	23844246	23844346	1080110	0	-	0.29	(0.28,0.32]	chr2	115293	98	INTRON	INTRON	ATAD2B	ENSG00000119778.15	ENST00000238789.10	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	2.18975	3.311575	4.4334	0.0776042	0.0163355	0.196285	0.109464
chr6	156911326	156911425	3008501	0	+	0.282828	(0.28,0.32]	chr6	281116	93	INTRON	INTRON	ARID1B	ENSG00000049618.24	ENST00000346085.10:ENST00000636930.2:ENST00000647938.1:ENST00000350026.10:ENST00000674298.1:ENST00000674190.1:ENST00000636748.1:ENST00000414678.7:ENST00000638000.1:ENST00000637532.1:ENST00000319584.11	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	34	2	2.18975	3.311575	4.4334	0.0776042	0.0163355	0.196285	0.109464
chrX	152729607	152729704	7909982	0	-	0.309278	(0.28,0.32]	chrX	804878	10	INTRON	INTRON	CSAG1	ENSG00000198930.13	ENST00000370287.7:ENST00000452779.3:ENST00000361211.9:ENST00000370291.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	34	2	2.18975	3.311575	4.4334	0.0776042	0.0163355	0.196285	0.109464
chr20	23412935	23413034	7321544	0	-	0.545455	(0.515,0.57]	chr20	745542	95	INTRON	INTRON	NAPB	ENSG00000125814.17	ENST00000398425.7:ENST00000432543.6:ENST00000617876.4:ENST00000377026.4:ENST00000472855.5:ENST00000468128.5:ENST00000487502.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	33	2	2.11313	3.311565	4.51	0.0256725	0.00809449	0.133676	0.0766625
chr17	47174663	47174763	6789247	0	-	0.49	(0.476,0.515]	chr17	669633	22	INTRON	INTRON	CDC27	ENSG00000004897.12	ENST00000066544.8:ENST00000531206.5:ENST00000533415.5:ENST00000527547.5:ENST00000526866.5:ENST00000525495.6:ENST00000573550.5:ENST00000575483.5:ENST00000532893.5:ENST00000528748.5:ENST00000532575.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	97	2	2.31529	3.31149	4.30769	0.00614783	1.28603e-5	0.0676501	0.00266147
chr19	23793548	23793648	7042741	0	+	0.42	(0.408,0.44]	chr19	702227	62	INTRON	INTRON	RPSAP58	ENSG00000288920.1	ENST00000471224.5:ENST00000692590.1:ENST00000475499.2:ENST00000686829.1:ENST00000689525.1:ENST00000691397.1:ENST00000688405.1:ENST00000687994.1:ENST00000484897.4:ENST00000685490.1:ENST00000462186.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	110	2	2.66271	3.31145	3.96019	4.42751e-4	1.56132e-4	0.0190383	0.0113571
chr19	49158945	49159043	7089043	0	+	0.5	(0.476,0.515]	chr19	709754	8	UTR3	UTR3:EXON_MRNA:INTRON	TRPM4	ENSG00000130529.16	ENST00000598691.5:ENST00000598697.5:ENST00000252826.10:ENST00000595519.5:ENST00000599628.5:ENST00000427978.6:ENST00000598502.5:ENST00000596338.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	60	2	3.2463	3.31131	3.37632	0.00262374	0.00195267	0.0470772	0.0400465
chr9	111905608	111905708	4184539	0	+	0.52	(0.515,0.57]	chr9	381684	79	INTRON	INTRON	UGCG	ENSG00000148154.10	ENST00000374279.4:ENST00000489355.1:ENST00000495085.1:ENST00000490110.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	33	2	1.86007	3.311255	4.76244	0.0526611	0.00362147	0.178401	0.0533855
chr19	23795944	23796044	7042765	0	+	0.54	(0.515,0.57]	chr19	702227	86	INTRON	INTRON	RPSAP58	ENSG00000288920.1	ENST00000471224.5:ENST00000692590.1:ENST00000475499.2:ENST00000686829.1:ENST00000689525.1:ENST00000691397.1:ENST00000688405.1:ENST00000687994.1:ENST00000484897.4:ENST00000685490.1:ENST00000462186.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	48	2	1.43029	3.311185	5.19208	0.0645632	3.4344e-4	0.179192	0.0164987
chr19	58388980	58389079	7107598	0	+	0.414141	(0.408,0.44]	chr19	713447	1	INTRON	INTRON	RPS5	ENSG00000083845.9	ENST00000601521.5:ENST00000596314.5:ENST00000598098.5:ENST00000196551.8:ENST00000598495.5:ENST00000598807.1:ENST00000596046.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	69	2	2.28817	3.311085	4.334	0.011982	0.00358507	0.0962115	0.0533855
chr2	131265079	131265178	866031	0	+	0.363636	(0.35,0.378]	chr2	97277	5	UTR3	UTR3:EXON_MRNA:INTRON	PLEKHB2:POTEE	ENSG00000115762.17:ENSG00000188219.16	ENST00000404460.5:ENST00000683005.1:ENST00000356920.9	protein_coding	protein_coding	protein_coding	protein_coding	9	209	2	2.6773	3.31105	3.9448	7.29368e-5	1.17571e-5	0.00712339	0.00271266
chr16	66825085	66825185	6502980	0	-	0.47	(0.44,0.476]	chr16	629240	2	SS3_PROX	SS3_PROX:INTRON	NAE1	ENSG00000159593.15	ENST00000359087.8:ENST00000290810.8:ENST00000379463.6:ENST00000394074.6:ENST00000567743.5:ENST00000563253.5:ENST00000563185.6:ENST00000561579.6:ENST00000564040.6:ENST00000569388.5:ENST00000566336.5:ENST00000565535.5:ENST00000569348.5:ENST00000562757.5:ENST00000563419.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	39	2	1.83899	3.31096	4.78293	0.0589734	0.00292033	0.167915	0.0494641
chr19	17232163	17232257	7151094	0	-	0.319149	(0.28,0.32]	chr19	722551	4	UTR3	UTR3:EXON_MRNA	NR2F6	ENSG00000160113.6	ENST00000291442.4	protein_coding	protein_coding	protein_coding	protein_coding	2	76	2	2.87382	3.31094	3.74806	0.014868	4.11943e-4	0.0989021	0.0181365
chr6	135026353	135026453	3225182	0	-	0.21	[0,0.28]	chr6	299838	1	SS5_PROX	SS5_PROX:INTRON	HBS1L	ENSG00000112339.15	ENST00000367837.10:ENST00000527578.5:ENST00000415177.6:ENST00000367826.6:ENST00000533274.5:ENST00000526100.5:ENST00000529641.5:ENST00000527507.1:ENST00000314674.7:ENST00000524715.5:ENST00000529882.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	47	2	2.15457	3.3109149999999996	4.46726	0.0427997	0.0269306	0.148082	0.135288
chr21	33540994	33541089	7441386	0	-	0.326316	(0.32,0.35]	chr21	759499	13	INTRON	INTRON	GART	ENSG00000159131.17	ENST00000381839.7:ENST00000381831.7:ENST00000424203.5:ENST00000381815.9:ENST00000361093.9:ENST00000430874.5:ENST00000426819.5:ENST00000476524.1:ENST00000438059.5:ENST00000441403.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	37	2	2.84812	3.3107800000000003	3.77344	0.0596635	0.0147575	0.189982	0.0983813
chr19	1092878	1092972	7111187	0	-	0.521277	(0.515,0.57]	chr19	714271	6	INTRON	INTRON	POLR2E	ENSG00000099817.12	ENST00000615234.5:ENST00000586746.5:ENST00000612655.4:ENST00000589737.5:ENST00000591767.5:ENST00000215587.11:ENST00000586817.5:ENST00000619917.4:ENST00000585838.2:ENST00000614705.4:ENST00000591709.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	70	2	2.99316	3.3106850000000003	3.62821	9.21623e-4	4.12866e-4	0.0278396	0.0181365
chr6	161051971	161052071	3025097	0	+	0.38	(0.378,0.408]	chr6	282325	16	INTRON	INTRON	MAP3K4	ENSG00000085511.20	ENST00000366919.6:ENST00000392142.9:ENST00000542952.5:ENST00000366920.6:ENST00000348824.11:ENST00000544041.5:ENST00000490904.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	101	2	2.53602	3.31065	4.08528	0.0020933	9.30621e-5	0.0424943	0.00857086
chr12	110006241	110006340	5224752	0	+	0.383838	(0.378,0.408]	chr12	495000	61	INTRON	INTRON	ANKRD13A	ENSG00000076513.17	ENST00000553025.5:ENST00000261739.9:ENST00000550404.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	28	2	2.63247	3.3105700000000002	3.98867	0.0507	0.0215745	0.156383	0.123836
chr19	36224466	36224565	7057518	0	+	0.40404	(0.378,0.408]	chr19	704664	59	INTRON	INTRON	ZNF146	ENSG00000167635.12	ENST00000456324.5:ENST00000591063.5:ENST00000443387.3:ENST00000586094.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	28	2	2.63247	3.3105700000000002	3.98867	0.0507	0.0215745	0.156383	0.123836
chr3	136825199	136825299	1512126	0	+	0.4	(0.378,0.408]	chr3	158172	43	INTRON	INTRON	SLC35G2	ENSG00000168917.9	ENST00000472200.1:ENST00000393079.3:ENST00000446465.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	28	2	2.63247	3.3105700000000002	3.98867	0.0507	0.0215745	0.156383	0.123836
chr4	48206780	48206880	2136074	0	-	0.38	(0.378,0.408]	chr4	210604	302	INTRON	INTRON	TEC	ENSG00000135605.13	ENST00000381501.8:ENST00000505452.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	28	2	2.63247	3.3105700000000002	3.98867	0.0507	0.0215745	0.156383	0.123836
chr9	94418937	94419036	4162608	0	+	0.383838	(0.378,0.408]	chr9	379491	33	INTRON	INTRON	MFSD14B	ENSG00000148110.17	ENST00000375344.8	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	2.63247	3.3105700000000002	3.98867	0.0507	0.0215745	0.156383	0.123836
chr19	1075576	1075675	6993732	0	+	0.474747	(0.44,0.476]	chr19	692778	3	INTRON	INTRON	ARHGAP45	ENSG00000180448.11	ENST00000539243.6:ENST00000313093.7:ENST00000587602.5:ENST00000591293.2:ENST00000590214.5:ENST00000586866.5:ENST00000543365.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	81	2	2.94373	3.3105599999999997	3.67739	0.00143431	3.8961e-4	0.0340925	0.0177751
chr7	121196726	121196826	3395736	0	+	0.36	(0.35,0.378]	chr7	317781	467	INTRON	INTRON	CPED1	ENSG00000106034.18	ENST00000310396.10:ENST00000450913.6:ENST00000423795.5:ENST00000466055.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	193	2	2.9266	3.310555	3.69451	2.08019e-4	3.22713e-6	0.0131276	0.00116609
chr7	107517237	107517337	3612558	0	-	0.32	(0.28,0.32]	chr7	336698	364	INTRON	INTRON	COG5	ENSG00000164597.15	ENST00000297135.9:ENST00000347053.8:ENST00000393603.7:ENST00000475638.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	67	2	1.63236	3.31054	4.98872	0.0273014	0.00838468	0.136494	0.0774402
chr17	77494061	77494158	6681607	0	+	0.525773	(0.515,0.57]	chr17	652613	6	INTRON	INTRON	SEPTIN9	ENSG00000184640.20	ENST00000591198.5:ENST00000427177.6:ENST00000431235.6:ENST00000449803.6:ENST00000329047.13:ENST00000588690.6:ENST00000423034.6:ENST00000427674.6:ENST00000585930.5:ENST00000541152.6:ENST00000591088.5:ENST00000592481.6:ENST00000592951.5:ENST00000427180.5:ENST00000586456.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	52	2	3.09002	3.310435	3.53085	0.00491099	6.59951e-4	0.0609494	0.0232396
chr19	18560650	18560750	7033113	0	+	0.52	(0.515,0.57]	chr19	700894	1	SS5_PROX	SS5_PROX:INTRON	KXD1	ENSG00000105700.11	ENST00000539106.5:ENST00000540691.5:ENST00000600372.5:ENST00000222307.9:ENST00000601630.5:ENST00000599000.5:ENST00000595073.5:ENST00000600654.5:ENST00000596785.5:ENST00000599319.5:ENST00000597438.5:ENST00000596244.1:ENST00000602094.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	52	2	3.09002	3.310435	3.53085	0.00491099	6.59951e-4	0.0609494	0.0232396
chr1	174317108	174317207	258698	0	+	0.434343	(0.408,0.44]	chr1	30802	116	INTRON	INTRON	RABGAP1L	ENSG00000152061.24	ENST00000357444.10:ENST00000251507.8:ENST00000681986.1:ENST00000457696.1:ENST00000367690.5	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	2.51492	3.31043	4.10594	0.0329839	0.0219367	0.133816	0.123836
chr7	73688859	73688956	3331622	0	+	0.42268	(0.408,0.44]	chr7	309885	14	INTRON	INTRON	BUD23	ENSG00000071462.12	ENST00000432522.5:ENST00000421744.5:ENST00000265758.7:ENST00000496153.5:ENST00000478670.5:ENST00000441822.5:ENST00000436944.5:ENST00000428163.5:ENST00000463307.5:ENST00000423497.5:ENST00000430270.5:ENST00000487006.2:ENST00000430446.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	30	2	2.51492	3.31043	4.10594	0.0329839	0.0219367	0.133816	0.123836
chr8	103045886	103045985	3821766	0	+	0.424242	(0.408,0.44]	chr8	353611	31	INTRON	INTRON	ATP6V1C1	ENSG00000155097.12	ENST00000395862.7:ENST00000518857.5:ENST00000518738.2:ENST00000521514.5	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	2.51492	3.31043	4.10594	0.0329839	0.0219367	0.133816	0.123836
chr9	130706197	130706295	4213842	0	+	0.438776	(0.408,0.44]	chr9	386418	8	INTRON	INTRON	EXOSC2	ENSG00000130713.17	ENST00000691284.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	1	30	2	2.51492	3.31043	4.10594	0.0329839	0.0219367	0.133816	0.123836
chr10	838091	838189	4541638	0	-	0.387755	(0.378,0.408]	chr10	419249	12	INTRON	INTRON	LARP4B	ENSG00000107929.16	ENST00000688365.1:ENST00000316157.8:ENST00000690516.1:ENST00000689323.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	54	2	2.10212	3.31033	4.51854	0.0141232	0.00748824	0.0959618	0.0772645
chr14	60287558	60287657	5736597	0	+	0.373737	(0.35,0.378]	chr14	544856	19	UTR3	UTR3:EXON_MRNA:INTRON	PPM1A	ENSG00000100614.18	ENST00000325642.7:ENST00000531143.6:ENST00000532036.2:ENST00000395076.9:ENST00000325658.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	29	2	2.6498	3.31006	3.97032	0.0578667	0.0210137	0.167723	0.122348
chr4	139143993	139144093	2247015	0	-	0.36	(0.35,0.378]	chr4	219601	41	INTRON	INTRON	ELF2	ENSG00000109381.21	ENST00000394235.6:ENST00000686138.1:ENST00000511184.5:ENST00000511006.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	29	2	2.6498	3.31006	3.97032	0.0578667	0.0210137	0.167723	0.122348
chr15	50685430	50685530	6173269	0	-	0.33	(0.32,0.35]	chr15	588397	220	INTRON	INTRON	TRPM7:ENSG00000288645	ENSG00000092439.16:ENSG00000288645.1	ENST00000646667.1:ENST00000560955.5:ENST00000676296.1	protein_coding	protein_coding	protein_coding	protein_coding	2	69	2	3.16237	3.310045	3.45772	0.00550276	0.00128487	0.0648867	0.0333518
chr1	39328906	39329006	77186	0	+	0.35	(0.32,0.35]	chr1	9892	2	SS5_PROX	SS5_PROX:INTRON	MACF1	ENSG00000127603.32	ENST00000361689.7:ENST00000567887.5:ENST00000372915.8:ENST00000672812.1:ENST00000564288.6:ENST00000671089.2:ENST00000530262.5:ENST00000372925.6:ENST00000476350.1:ENST00000673926.1:ENST00000528611.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	40	2	2.07985	3.3098650000000003	4.53988	0.0303092	0.0202178	0.143025	0.109913
chr1	40176152	40176251	80111	0	+	0.333333	(0.32,0.35]	chr1	10405	142	INTRON	INTRON	RLF	ENSG00000117000.9	ENST00000372771.5	protein_coding	protein_coding	protein_coding	protein_coding	2	40	2	2.07985	3.3098650000000003	4.53988	0.0303092	0.0202178	0.143025	0.109913
chr12	108727846	108727945	5406749	0	-	0.333333	(0.32,0.35]	chr12	516035	249	INTRON	INTRON	CORO1C	ENSG00000110880.11	ENST00000261401.8:ENST00000541050.5:ENST00000549384.5:ENST00000550542.5:ENST00000552871.5:ENST00000551550.5:ENST00000546571.5:ENST00000551044.1:ENST00000551059.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	40	2	2.07985	3.3098650000000003	4.53988	0.0303092	0.0202178	0.143025	0.109913
chr7	156580500	156580600	3685137	0	-	0.34	(0.32,0.35]	chr7	341933	985	INTRON	INTRON	LINC01006	ENSG00000182648.14	ENST00000651649.1:ENST00000652322.1:ENST00000656672.1:ENST00000661405.1:ENST00000656928.1:ENST00000661595.1:ENST00000656505.1:ENST00000447933.7:ENST00000660473.1:ENST00000671433.1:ENST00000425712.1:ENST00000656837.1:ENST00000663891.1	lncRNA	lncRNA	lncRNA	lncRNA	2	40	2	2.07985	3.3098650000000003	4.53988	0.0303092	0.0202178	0.143025	0.109913
chr8	8239192	8239292	3906277	0	-	0.33	(0.32,0.35]	chr8	357963	3	SS5_PROX	SS5_PROX:INTRON	ALG1L13P	ENSG00000253981.6	ENST00000689104.1:ENST00000688025.1:ENST00000523017.5:ENST00000519320.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	2	40	2	2.07985	3.3098650000000003	4.53988	0.0303092	0.0202178	0.143025	0.109913
chr1	236573607	236573701	665435	0	-	0.255319	[0,0.28]	chr1	78852	4	INTRON	INTRON	HEATR1	ENSG00000119285.11	ENST00000366582.8:ENST00000366581.6	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	2.33055	3.30985	4.28915	0.062338	0.0319595	0.175343	0.14477
chr8	90358066	90358166	3793676	0	+	0.26	[0,0.28]	chr8	351792	60	INTRON	INTRON	LINC00534	ENSG00000253394.7	ENST00000662145.1:ENST00000655523.1:ENST00000517400.6:ENST00000658299.1:ENST00000663329.1:ENST00000658342.1:ENST00000523283.6:ENST00000655219.1:ENST00000662692.1:ENST00000667296.1:ENST00000667565.1:ENST00000523406.2:ENST00000659030.1:ENST00000653734.1:ENST00000654785.1:ENST00000524361.5:ENST00000668745.1:ENST00000661519.1:ENST00000671657.1:ENST00000655123.1:ENST00000663098.1:ENST00000670903.1:ENST00000654946.1	lncRNA	lncRNA	lncRNA	lncRNA	1	38	2	2.33055	3.30985	4.28915	0.062338	0.0319595	0.175343	0.14477
chr9	112163977	112164077	4316669	0	-	0.25	[0,0.28]	chr9	396993	60	INTRON	INTRON	SUSD1	ENSG00000106868.17	ENST00000374270.8:ENST00000374263.7:ENST00000355396.7:ENST00000374264.6	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	2.33055	3.30985	4.28915	0.062338	0.0319595	0.175343	0.14477
chr12	76057353	76057450	5369938	0	-	0.371134	(0.35,0.378]	chr12	512288	8	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	NAP1L1	ENSG00000187109.15	ENST00000618691.5:ENST00000552056.5:ENST00000393263.7:ENST00000431879.7:ENST00000552147.5:ENST00000547773.5:ENST00000544816.5:ENST00000542344.5:ENST00000535020.6:ENST00000549596.5:ENST00000547993.5:ENST00000552342.5:ENST00000547529.6:ENST00000548044.5:ENST00000550934.5:ENST00000551992.5:ENST00000548273.5:ENST00000551600.5:ENST00000547704.5:ENST00000551524.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	38	2	1.82887	3.3098300000000003	4.79079	0.0584878	0.00846427	0.189395	0.0776969
chr15	40600038	40600137	6002488	0	+	0.373737	(0.35,0.378]	chr15	570845	53	INTRON	INTRON	KNL1	ENSG00000137812.21	ENST00000346991.9:ENST00000528975.5:ENST00000614337.4:ENST00000399668.7:ENST00000532056.5:ENST00000533001.1:ENST00000534204.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	38	2	1.82887	3.3098300000000003	4.79079	0.0584878	0.00846427	0.189395	0.0776969
chr11	47833261	47833360	4952014	0	-	0.474747	(0.44,0.476]	chr11	464617	57	INTRON	INTRON	NUP160	ENSG00000030066.14	ENST00000694866.1:ENST00000378460.7:ENST00000530326.5:ENST00000528071.5:ENST00000528501.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	27	2	2.49112	3.309775	4.12843	0.0337192	0.0315968	0.144381	0.134145
chr12	121946569	121946669	5238771	0	+	0.45	(0.44,0.476]	chr12	497342	32	INTRON	INTRON	CFAP251	ENSG00000158023.10	ENST00000288912.9:ENST00000397454.2:ENST00000546044.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	27	2	2.49112	3.309775	4.12843	0.0337192	0.0315968	0.144381	0.134145
chr14	58262807	58262906	5731089	0	+	0.464646	(0.44,0.476]	chr14	544106	14	INTRON	INTRON	PSMA3	ENSG00000100567.13	ENST00000216455.9:ENST00000554812.5:ENST00000557087.5:ENST00000555931.5:ENST00000412908.6:ENST00000555743.1:ENST00000557508.5:ENST00000553677.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	27	2	2.49112	3.309775	4.12843	0.0337192	0.0315968	0.144381	0.134145
chr14	65082564	65082662	5912130	0	-	0.459184	(0.44,0.476]	chr14	561554	42	INTRON	INTRON	MAX	ENSG00000125952.20	ENST00000341653.6:ENST00000651648.1:ENST00000618858.4:ENST00000358402.8:ENST00000394606.6:ENST00000358664.9:ENST00000555932.5:ENST00000284165.10:ENST00000555419.5:ENST00000553928.5:ENST00000557277.5:ENST00000556892.5:ENST00000553951.1:ENST00000556979.5:ENST00000555667.5:ENST00000557746.5:ENST00000556443.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	27	2	2.49112	3.309775	4.12843	0.0337192	0.0315968	0.144381	0.134145
chr19	5662774	5662867	7005712	0	+	0.451613	(0.44,0.476]	chr19	695024	6	INTRON	INTRON	SAFB	ENSG00000160633.13	ENST00000589863.5:ENST00000588852.2:ENST00000292123.9:ENST00000592224.5:ENST00000454510.5:ENST00000589006.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	27	2	2.49112	3.309775	4.12843	0.0337192	0.0315968	0.144381	0.134145
chr19	10145451	10145551	7134339	0	-	0.47	(0.44,0.476]	chr19	719111	8	INTRON	INTRON	DNMT1	ENSG00000130816.17	ENST00000586667.2:ENST00000340748.8:ENST00000359526.9:ENST00000592705.5:ENST00000679103.1:ENST00000677634.1:ENST00000676820.1:ENST00000677250.1:ENST00000677013.1:ENST00000677685.1:ENST00000677616.1:ENST00000676604.1:ENST00000678024.1:ENST00000676868.1:ENST00000677783.1:ENST00000678694.1:ENST00000679100.1:ENST00000678647.1:ENST00000676610.1:ENST00000678804.1:ENST00000679313.1:ENST00000677946.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	27	2	2.49112	3.309775	4.12843	0.0337192	0.0315968	0.144381	0.134145
chr2	17686560	17686660	1073405	0	-	0.45	(0.44,0.476]	chr2	114521	24	INTRON	INTRON	SMC6	ENSG00000163029.16	ENST00000351948.8:ENST00000448223.7:ENST00000402989.5	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	2.49112	3.309775	4.12843	0.0337192	0.0315968	0.144381	0.134145
chr2	32649530	32649630	733718	0	+	0.45	(0.44,0.476]	chr2	84737	88	INTRON	INTRON	TTC27	ENSG00000018699.13	ENST00000317907.9:ENST00000647819.1:ENST00000454690.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	27	2	2.49112	3.309775	4.12843	0.0337192	0.0315968	0.144381	0.134145
chr2	235662504	235662604	1043022	0	+	0.47	(0.44,0.476]	chr2	111222	1376	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1:ENST00000402604.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	27	2	2.49112	3.309775	4.12843	0.0337192	0.0315968	0.144381	0.134145
chr20	5604640	5604740	7312281	0	-	0.46	(0.44,0.476]	chr20	744618	2	SS3_PROX	SS3_PROX:INTRON	GPCPD1	ENSG00000125772.14	ENST00000379019.7:ENST00000481690.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	27	2	2.49112	3.309775	4.12843	0.0337192	0.0315968	0.144381	0.134145
chr5	98879051	98879151	2683543	0	-	0.46	(0.44,0.476]	chr5	253841	1	SS5_PROX	SS5_PROX:INTRON	CHD1	ENSG00000153922.11	ENST00000614616.5:ENST00000284049.7	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	2.49112	3.309775	4.12843	0.0337192	0.0315968	0.144381	0.134145
chr5	126969552	126969652	2713948	0	-	0.45	(0.44,0.476]	chr5	255278	228	INTRON	INTRON	MARCHF3	ENSG00000173926.6	ENST00000308660.6:ENST00000502289.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	27	2	2.49112	3.309775	4.12843	0.0337192	0.0315968	0.144381	0.134145
chr6	10900518	10900615	2811882	0	+	0.474227	(0.44,0.476]	chr6	264568	13	INTRON	INTRON	SYCP2L	ENSG00000153157.13	ENST00000341041.8:ENST00000283141.11:ENST00000543878.5:ENST00000487561.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	27	2	2.49112	3.309775	4.12843	0.0337192	0.0315968	0.144381	0.134145
chr7	102005498	102005598	3368249	0	+	0.47	(0.44,0.476]	chr7	315233	455	INTRON	INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000497815.5:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000558469.5:ENST00000560541.5:ENST00000558836.5:ENST00000606749.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	27	2	2.49112	3.309775	4.12843	0.0337192	0.0315968	0.144381	0.134145
chr9	83237572	83237671	4148441	0	+	0.464646	(0.44,0.476]	chr9	378308	40	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	FRMD3-AS1	ENSG00000229109.2	ENST00000662757.1:ENST00000668931.1	lncRNA	lncRNA	lncRNA	lncRNA	1	27	2	2.49112	3.309775	4.12843	0.0337192	0.0315968	0.144381	0.134145
chr9	137633714	137633813	4223619	0	+	0.464646	(0.44,0.476]	chr9	388152	133	INTRON	INTRON	EHMT1	ENSG00000181090.21	ENST00000462484.5:ENST00000371394.6:ENST00000630754.2:ENST00000460843.6:ENST00000626216.2:ENST00000637593.1:ENST00000629335.2:ENST00000637335.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	27	2	2.49112	3.309775	4.12843	0.0337192	0.0315968	0.144381	0.134145
chr11	61327410	61327510	4956449	0	-	0.47	(0.44,0.476]	chr11	465749	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	DDB1	ENSG00000167986.15	ENST00000301764.12:ENST00000680367.1:ENST00000681803.1:ENST00000680717.1:ENST00000679712.1:ENST00000680357.1:ENST00000680075.1:ENST00000679588.1:ENST00000680602.1:ENST00000680881.1:ENST00000681188.1:ENST00000535283.6:ENST00000681935.1:ENST00000680250.1:ENST00000540166.5:ENST00000679855.1:ENST00000681368.1:ENST00000543658.5:ENST00000545930.5:ENST00000681067.1:ENST00000680096.1:ENST00000543162.2:ENST00000537120.5:ENST00000539426.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	111	2	2.87022	3.309735	3.74925	4.08974e-4	1.38486e-4	0.0185763	0.0101334
chr17	38852319	38852414	6765124	0	-	0.4	(0.378,0.408]	chr17	665397	8	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	RPL23	ENSG00000125691.14	ENST00000479035.7:ENST00000394333.5:ENST00000394332.5:ENST00000584912.5:ENST00000245857.9:ENST00000577407.5:ENST00000470646.1:ENST00000378096.3:ENST00000577760.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	73	2	2.63247	3.309735	3.987	0.0215745	1.51115e-4	0.123836	0.0112678
chr10	35128463	35128562	4422719	0	+	0.343434	(0.32,0.35]	chr10	407755	5	INTRON	INTRON	CREM	ENSG00000095794.20	ENST00000474362.5:ENST00000374721.7:ENST00000496626.5:ENST00000685392.1:ENST00000482646.5:ENST00000489388.5:ENST00000374726.7:ENST00000461968.5:ENST00000490460.5:ENST00000466251.5:ENST00000482633.5:ENST00000495960.5:ENST00000686585.1:ENST00000429130.7:ENST00000469949.6:ENST00000460270.5:ENST00000496019.5:ENST00000354759.7:ENST00000489321.5:ENST00000374728.7:ENST00000427847.6:ENST00000345491.7:ENST00000487132.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	70	2	3.23331	3.3097149999999997	3.38612	0.00315414	0.00249604	0.0515261	0.0446195
chr4	26335543	26335643	1936818	0	+	0.41	(0.408,0.44]	chr4	194354	122	INTRON	INTRON	RBPJ	ENSG00000168214.22	ENST00000512351.5:ENST00000681799.1:ENST00000681403.1:ENST00000342295.6:ENST00000512671.6:ENST00000506956.5:ENST00000345843.8:ENST00000361572.10:ENST00000514380.5:ENST00000514807.5:ENST00000348160.9:ENST00000681506.1:ENST00000509158.6:ENST00000691085.1:ENST00000692303.1:ENST00000681856.1:ENST00000513182.5:ENST00000681025.1:ENST00000681679.1:ENST00000680210.1:ENST00000355476.8:ENST00000680140.1:ENST00000511401.5:ENST00000680511.1:ENST00000510778.7:ENST00000679698.1:ENST00000679469.1:ENST00000681484.1:ENST00000505958.6:ENST00000507561.5:ENST00000514730.5:ENST00000507574.5:ENST00000514675.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	82	2	2.49218	3.30964	4.1271	0.00855168	3.62655e-5	0.0780217	0.00482747
chr7	111400907	111401007	3622495	0	-	0.29	(0.28,0.32]	chr7	337108	81	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000452895.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding	3	103	2	2.9689	3.30953	3.65016	0.00194987	6.39301e-4	0.0400465	0.0228666
chr7	152251063	152251160	3679427	0	-	0.237113	[0,0.28]	chr7	341589	2	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000681033.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682916.1:ENST00000683038.1:ENST00000682280.1:ENST00000680039.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	85	2	1.27002	3.30946	5.3489	0.0594396	0.00514751	0.189982	0.062965
chr9	124261883	124261983	4196808	0	+	0.34	(0.32,0.35]	chr9	382970	3	SS5_PROX	SS5_PROX:INTRON	NEK6	ENSG00000119408.17	ENST00000373603.5:ENST00000540326.5:ENST00000320246.10:ENST00000373600.7:ENST00000545174.5:ENST00000444973.5:ENST00000454453.5:ENST00000425237.5:ENST00000373596.5	protein_coding	protein_coding	protein_coding	protein_coding	4	61	2	1.38564	3.309455	5.23327	0.0793006	9.33826e-4	0.199711	0.0278746
chr11	47734926	47735025	4951080	0	-	0.525253	(0.515,0.57]	chr11	464406	4	INTRON	INTRON	FNBP4	ENSG00000109920.13	ENST00000263773.10:ENST00000528388.5:ENST00000534003.5:ENST00000527894.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	37	2	2.32967	3.30944	4.28921	0.0133671	0.00990051	0.0946278	0.0877296
chr15	34424917	34425017	6133138	0	-	0.53	(0.515,0.57]	chr15	584282	168	INTRON	INTRON	GOLGA8A	ENSG00000175265.18	ENST00000359187.5:ENST00000569781.1:ENST00000565885.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	37	2	2.32967	3.30944	4.28921	0.0133671	0.00990051	0.0946278	0.0877296
chr16	2269043	2269143	6277867	0	+	0.56	(0.515,0.57]	chr16	600345	2	SS5_PROX	SS5_PROX:INTRON	MIR3677HG	ENSG00000260778.5	ENST00000563734.1:ENST00000567888.1:ENST00000562838.1	lncRNA	lncRNA	lncRNA	lncRNA	2	37	2	2.32967	3.30944	4.28921	0.0133671	0.00990051	0.0946278	0.0877296
chr19	57848096	57848194	7106012	0	+	0.510204	(0.476,0.515]	chr19	713221	20	INTRON	INTRON	ENSG00000268750	ENSG00000268750.7	ENST00000597134.5:ENST00000596498.2:ENST00000593873.6:ENST00000603271.1:ENST00000598031.1:ENST00000604231.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	83	2	2.58615	3.30936	4.03257	0.00515536	9.96835e-5	0.0650394	0.00903184
chr12	45856058	45856157	5123996	0	+	0.414141	(0.408,0.44]	chr12	483375	28	INTRON	INTRON	ARID2	ENSG00000189079.17	ENST00000334344.11:ENST00000422737.6:ENST00000479608.5:ENST00000444670.5:ENST00000457135.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	49	2	1.83501	3.3092449999999998	4.78348	0.0323448	0.00290352	0.133003	0.0494641
chr20	2942981	2943081	7223259	0	+	0.35	(0.32,0.35]	chr20	733951	193	INTRON	INTRON	PTPRA	ENSG00000132670.21	ENST00000455631.5:ENST00000399903.7:ENST00000216877.10:ENST00000431048.5:ENST00000318266.9:ENST00000430705.5:ENST00000356147.3	protein_coding	protein_coding	protein_coding	protein_coding	3	53	2	1.55682	3.309105	5.06139	0.0724487	0.00179023	0.188101	0.0392749
chr1	108780476	108780572	178592	0	+	0.34375	(0.32,0.35]	chr1	19423	12	EXON_LNCRNA	EXON_LNCRNA:INTRON	STXBP3	ENSG00000116266.11	ENST00000370008.4:ENST00000485167.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	94	2	2.89545	3.3091049999999997	3.72276	0.0022546	3.96144e-4	0.0425438	0.0178616
chr14	102600322	102600422	5822610	0	+	0.44	(0.408,0.44]	chr14	552490	66	INTRON	INTRON	RCOR1	ENSG00000089902.10	ENST00000262241.7	protein_coding	protein_coding	protein_coding	protein_coding	4	108	2	3.27443	3.30906	3.34369	3.21517e-4	1.46092e-4	0.0165575	0.0105174
chr4	159105430	159105530	2073523	0	+	0.42	(0.408,0.44]	chr4	205172	8	INTRON	INTRON	RAPGEF2	ENSG00000109756.10	ENST00000644474.1:ENST00000691494.1:ENST00000505478.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	111	2	2.82797	3.3086700000000002	3.78937	3.51772e-4	1.76514e-4	0.0174637	0.0115835
chr20	62162251	62162349	7297675	0	+	0.418367	(0.408,0.44]	chr20	742275	1	SS3_PROX	SS3_PROX:INTRON	SS18L1	ENSG00000184402.15	ENST00000331758.8:ENST00000370848.8	protein_coding	protein_coding	protein_coding	protein_coding	7	178	2	2.81492	3.308655	3.80239	2.99674e-4	1.1678e-6	0.0160591	6.23613e-4
chr4	74165340	74165439	1972376	0	+	0.393939	(0.378,0.408]	chr4	197724	32	INTRON	INTRON	MTHFD2L	ENSG00000163738.19	ENST00000429519.5:ENST00000429335.5:ENST00000433372.5:ENST00000423607.6:ENST00000395759.6:ENST00000325278.7:ENST00000359107.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	62	2	3.05502	3.30855	3.56208	0.00689519	6.94246e-4	0.0717484	0.0240761
chr15	72486701	72486800	6059284	0	+	0.474747	(0.44,0.476]	chr15	576852	113	INTRON	INTRON	ARIH1	ENSG00000166233.15	ENST00000379887.9:ENST00000570085.5:ENST00000564062.1:ENST00000567762.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	128	2	3.27139	3.3083799999999997	3.34537	2.18713e-4	4.01351e-5	0.0135522	0.00513517
chr1	160259188	160259288	571578	0	-	0.47	(0.44,0.476]	chr1	69176	148	INTRON	INTRON	DCAF8	ENSG00000132716.19	ENST00000326837.6:ENST00000368073.7:ENST00000368074.6:ENST00000461888.5:ENST00000475733.5:ENST00000610139.5:ENST00000447377.5:ENST00000495887.1:ENST00000440682.5:ENST00000407642.6:ENST00000419626.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	36	2	1.93084	3.30824	4.68564	0.0443175	0.00816201	0.162302	0.0766625
chr21	10338566	10338666	7427406	0	-	0.45	(0.44,0.476]	chr21	757673	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	ENSG00000277693	ENSG00000277693.2	ENST00000622592.1:ENST00000616952.1:ENST00000667012.1	lncRNA	lncRNA	lncRNA	lncRNA	2	36	2	1.93084	3.30824	4.68564	0.0443175	0.00816201	0.162302	0.0766625
chr7	128000863	128000962	3405914	0	+	0.474747	(0.44,0.476]	chr7	318188	29	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000486037.1:ENST00000484767.5:ENST00000470723.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	36	2	1.93084	3.30824	4.68564	0.0443175	0.00816201	0.162302	0.0766625
chr6	34370766	34370866	3084555	0	-	0.42	(0.408,0.44]	chr6	288633	284	INTRON	INTRON	NUDT3:RPS10-NUDT3	ENSG00000272325.2:ENSG00000270800.3	ENST00000607016.2:ENST00000639725.1:ENST00000639877.1:ENST00000605528.2	protein_coding	protein_coding	protein_coding	protein_coding	4	96	2	2.82697	3.30817	3.78937	4.95662e-4	3.51772e-4	0.0201536	0.0174637
chr1	40231516	40231587	80672	0	+	0.380282	(0.378,0.408]	chr1	10440	1	CDS	CDS:EXON_MRNA	RLF	ENSG00000117000.9	ENST00000372771.5	protein_coding	protein_coding	protein_coding	protein_coding	3	85	2	2.43657	3.3081500000000004	4.17973	0.0106733	2.85856e-5	0.0861859	0.00423319
chr5	171398159	171398258	2546673	0	+	0.353535	(0.35,0.378]	chr5	243099	48	INTRON	INTRON	NPM1	ENSG00000181163.14	ENST00000517671.5:ENST00000676613.1:ENST00000678186.1:ENST00000678267.1:ENST00000677297.1:ENST00000521672.6:ENST00000679190.1:ENST00000677467.1:ENST00000678280.1:ENST00000676625.1:ENST00000679006.1:ENST00000351986.10:ENST00000676504.1:ENST00000676589.1:ENST00000677357.1:ENST00000679233.1:ENST00000296930.10:ENST00000393820.2:ENST00000521260.2:ENST00000518587.2:ENST00000678774.1:ENST00000677600.1:ENST00000677741.1:ENST00000677325.1:ENST00000677672.1:ENST00000677907.1:ENST00000677904.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	269	2	3.01008	3.30809	3.6061	3.61544e-5	1.44987e-6	0.00508987	7.22593e-4
chr20	2960881	2960980	7223439	0	+	0.30303	(0.28,0.32]	chr20	733963	48	INTRON	INTRON	PTPRA	ENSG00000132670.21	ENST00000455631.5:ENST00000399903.7:ENST00000216877.10:ENST00000431048.5:ENST00000318266.9:ENST00000430705.5:ENST00000356147.3	protein_coding	protein_coding	protein_coding	protein_coding	2	43	2	2.1895	3.3079	4.4263	0.0330296	0.0227063	0.133816	0.124921
chr5	171409734	171409831	2546799	0	+	0.484536	(0.476,0.515]	chr5	243128	16	INTRON	INTRON	NPM1	ENSG00000181163.14	ENST00000517671.5:ENST00000676613.1:ENST00000678186.1:ENST00000678267.1:ENST00000677297.1:ENST00000521672.6:ENST00000679190.1:ENST00000677467.1:ENST00000678280.1:ENST00000676625.1:ENST00000351986.10:ENST00000676504.1:ENST00000676589.1:ENST00000677357.1:ENST00000296930.10:ENST00000521260.2:ENST00000518587.2:ENST00000678774.1:ENST00000677600.1:ENST00000677741.1:ENST00000677325.1:ENST00000677672.1:ENST00000677907.1:ENST00000677904.1:ENST00000677682.1:ENST00000524204.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	80	2	3.23946	3.30789	3.37632	0.00195267	2.59571e-4	0.0400465	0.014326
chr7	151501964	151502063	3674746	0	-	0.59596	(0.57,1]	chr7	341207	34	INTRON	INTRON	RHEB	ENSG00000106615.10	ENST00000262187.10:ENST00000472642.5:ENST00000478470.5:ENST00000496004.5:ENST00000470370.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	29	2	2.24434	3.30785	4.37136	0.00677343	0.00345135	0.074225	0.0517761
chr18	77980434	77980533	6990159	0	-	0.606061	(0.57,1]	chr18	691894	4	INTRON	INTRON	LINC01029	ENSG00000265843.3	ENST00000657337.1:ENST00000669341.1:ENST00000671271.1:ENST00000668585.1:ENST00000666771.1:ENST00000667842.1:ENST00000661306.1:ENST00000662598.1:ENST00000662109.1:ENST00000662085.1:ENST00000583106.1:ENST00000582805.1:ENST00000656930.1	lncRNA	lncRNA	lncRNA	lncRNA	7	92	2	3.07764	3.307795	3.53795	1.92994e-5	2.9097e-6	0.00337681	0.00120122
chr1	113807516	113807616	525899	0	-	0.51	(0.476,0.515]	chr1	61864	91	INTRON	INTRON	RSBN1	ENSG00000081019.14	ENST00000261441.9:ENST00000612242.4:ENST00000476412.5:ENST00000615321.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	27	2	2.47949	3.307675	4.13586	0.0326974	0.031846	0.145164	0.13151
chr12	776249	776348	5056414	0	+	0.515152	(0.476,0.515]	chr12	477423	216	INTRON	INTRON	WNK1	ENSG00000060237.19	ENST00000315939.11:ENST00000340908.9:ENST00000535572.5:ENST00000537687.5:ENST00000530271.6:ENST00000447667.2	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	2.47949	3.307675	4.13586	0.0326974	0.031846	0.145164	0.13151
chr3	152268326	152268421	1534974	0	+	0.484211	(0.476,0.515]	chr3	159974	4	UTR5	UTR5:EXON_MRNA:INTRON	MBNL1	ENSG00000152601.18	ENST00000477171.1:ENST00000282486.10:ENST00000282488.11	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	27	2	2.47949	3.307675	4.13586	0.0326974	0.031846	0.145164	0.13151
chr5	133063387	133063486	2488115	0	+	0.484848	(0.476,0.515]	chr5	237470	106	INTRON	INTRON	HSPA4	ENSG00000170606.16	ENST00000304858.7	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	2.47949	3.307675	4.13586	0.0326974	0.031846	0.145164	0.13151
chr7	50708395	50708494	3531818	0	-	0.50505	(0.476,0.515]	chr7	329472	27	INTRON	INTRON	GRB10	ENSG00000106070.20	ENST00000335866.7:ENST00000398812.6:ENST00000401949.6:ENST00000402578.5:ENST00000644769.1:ENST00000403097.6:ENST00000644879.1:ENST00000406641.5:ENST00000402497.6:ENST00000357271.9:ENST00000643299.1:ENST00000407526.6:ENST00000645075.2:ENST00000439044.7:ENST00000644716.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	27	2	2.47949	3.307675	4.13586	0.0326974	0.031846	0.145164	0.13151
chr6	147673481	147673581	2990730	0	+	0.41	(0.408,0.44]	chr6	280159	123	INTRON	INTRON	ENSG00000227681	ENSG00000227681.5	ENST00000427015.1:ENST00000432506.5	lncRNA	lncRNA	lncRNA	lncRNA	3	80	2	3.09037	3.30754	3.52471	0.00112428	5.47766e-4	0.0306963	0.0212924
chr7	73521726	73521826	3555095	0	-	0.79	(0.57,1]	chr7	330815	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	BAZ1B	ENSG00000009954.11	ENST00000339594.9:ENST00000404251.1	protein_coding	protein_coding	protein_coding	protein_coding	3	29	2	1.83769	3.3074950000000003	4.7773	0.0297587	5.07088e-4	0.12908	0.0202328
chr7	130177005	130177104	3638463	0	-	0.414141	(0.408,0.44]	chr7	338365	10	INTRON	INTRON	TMEM209	ENSG00000146842.17	ENST00000397622.7:ENST00000473456.5:ENST00000462753.5:ENST00000479804.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	80	2	3.01942	3.30749	3.59556	8.33275e-4	7.74413e-4	0.0266389	0.0256083
chr21	37086474	37086571	7404954	0	+	0.391753	(0.378,0.408]	chr21	754526	8	UTR5	UTR5:EXON_MRNA:INTRON	TTC3	ENSG00000182670.14	ENST00000492275.6:ENST00000418766.6:ENST00000485402.5:ENST00000450533.6:ENST00000438055.5:ENST00000696812.1:ENST00000696811.1:ENST00000463216.6:ENST00000481605.6:ENST00000540756.5:ENST00000494243.5:ENST00000399010.5:ENST00000411496.2:ENST00000399017.6:ENST00000484047.5:ENST00000354749.6:ENST00000479930.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	38	2	2.29798	3.307485	4.31699	0.0250408	0.0147606	0.12011	0.106702
chr1	35099646	35099744	68115	0	+	0.255102	[0,0.28]	chr1	8682	17	INTRON	INTRON	ZMYM1	ENSG00000197056.11	ENST00000650449.1:ENST00000611874.4:ENST00000417119.5:ENST00000359858.9:ENST00000488455.5:ENST00000373330.1:ENST00000373329.5:ENST00000475654.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	55	2	1.66929	3.3074500000000002	4.94561	0.0537506	0.0150263	0.180803	0.0994339
chr15	92914675	92914774	6103837	0	+	0.272727	[0,0.28]	chr15	581401	57	INTRON	INTRON	ENSG00000279765:CHD2	ENSG00000279765.3:ENSG00000173575.22	ENST00000629685.2:ENST00000630790.1:ENST00000626874.2:ENST00000394196.9:ENST00000635856.1:ENST00000420239.7:ENST00000628375.2:ENST00000625990.3:ENST00000626782.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	55	2	1.66929	3.3074500000000002	4.94561	0.0537506	0.0150263	0.180803	0.0994339
chr1	162501104	162501204	238026	0	+	0.33	(0.32,0.35]	chr1	28658	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	UHMK1	ENSG00000152332.16	ENST00000545294.5:ENST00000538489.5:ENST00000489294.2:ENST00000282169.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	48	2	1.78201	3.3074399999999997	4.83287	0.0365003	0.0095071	0.153759	0.0817766
chr12	878861	878931	5057456	0	+	0.328571	(0.32,0.35]	chr12	477493	1	INTRON	INTRON	WNK1	ENSG00000060237.19	ENST00000315939.11:ENST00000340908.9:ENST00000535572.5:ENST00000537687.5:ENST00000530271.6:ENST00000675631.1:ENST00000676347.1:ENST00000545285.5:ENST00000535698.1:ENST00000674810.1:ENST00000675236.1:ENST00000542543.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	48	2	1.78201	3.3074399999999997	4.83287	0.0365003	0.0095071	0.153759	0.0817766
chr19	23920283	23920380	7043587	0	+	0.340206	(0.32,0.35]	chr19	702279	3	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	ZNF726	ENSG00000213967.12	ENST00000525354.6:ENST00000334589.9:ENST00000531821.6:ENST00000594466.6:ENST00000575986.1	protein_coding	protein_coding	protein_coding	protein_coding	3	48	2	1.78201	3.3074399999999997	4.83287	0.0365003	0.0095071	0.153759	0.0817766
chr20	64266504	64266602	7302290	0	+	0.540816	(0.515,0.57]	chr20	743391	5	INTRON	INTRON	PCMTD2	ENSG00000203880.12	ENST00000299468.11:ENST00000369758.8:ENST00000308824.11:ENST00000609372.1:ENST00000609818.1	protein_coding	protein_coding	protein_coding	protein_coding	3	69	2	3.16455	3.307345	3.45014	0.00116948	3.23741e-4	0.0312127	0.0159645
chr12	49760512	49760610	5135134	0	+	0.438776	(0.408,0.44]	chr12	484169	8	INTRON	INTRON	TMBIM6	ENSG00000139644.13	ENST00000267115.10:ENST00000552699.5:ENST00000549385.5:ENST00000423828.5:ENST00000552370.5:ENST00000395006.8:ENST00000547798.1:ENST00000547013.1:ENST00000550040.1:ENST00000549471.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	27	2	2.49258	3.307225	4.12187	0.0354689	0.0314608	0.144381	0.137535
chr14	76327796	76327896	5797277	0	+	0.42	(0.408,0.44]	chr14	549230	165	INTRON	INTRON	ESRRB	ENSG00000119715.15	ENST00000512784.6	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	2.49258	3.307225	4.12187	0.0354689	0.0314608	0.144381	0.137535
chr15	28318229	28318329	6124028	0	-	0.42	(0.408,0.44]	chr15	583407	184	INTRON	INTRON	HERC2	ENSG00000128731.18	ENST00000261609.13:ENST00000564734.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	27	2	2.49258	3.307225	4.12187	0.0354689	0.0314608	0.144381	0.137535
chr16	81319270	81319370	6404263	0	+	0.43	(0.408,0.44]	chr16	614961	36	INTRON	INTRON	GAN	ENSG00000261609.8	ENST00000648349.2:ENST00000648994.2:ENST00000674788.1:ENST00000650388.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	27	2	2.49258	3.307225	4.12187	0.0354689	0.0314608	0.144381	0.137535
chr17	21012429	21012529	6742851	0	-	0.42	(0.408,0.44]	chr17	662029	2	SS5_PROX	SS5_PROX:INTRON	USP22	ENSG00000124422.12	ENST00000261497.9:ENST00000537526.6:ENST00000455117.6:ENST00000579645.5:ENST00000582335.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	27	2	2.49258	3.307225	4.12187	0.0354689	0.0314608	0.144381	0.137535
chr22	26479581	26479681	7564091	0	-	0.44	(0.408,0.44]	chr22	773893	3	UTR5	UTR5:EXON_MRNA:SS3_PROX:INTRON	HPS4	ENSG00000100099.21	ENST00000398145.7:ENST00000466781.5:ENST00000439453.5:ENST00000336873.9:ENST00000402105.7:ENST00000422379.2:ENST00000483631.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	27	2	2.49258	3.307225	4.12187	0.0354689	0.0314608	0.144381	0.137535
chr22	40136345	40136445	7517765	0	+	0.43	(0.408,0.44]	chr22	768097	101	INTRON	INTRON	TNRC6B	ENSG00000100354.21	ENST00000301923.13:ENST00000441751.5:ENST00000402203.5	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	2.49258	3.307225	4.12187	0.0354689	0.0314608	0.144381	0.137535
chr3	172255139	172255239	1561712	0	+	0.44	(0.408,0.44]	chr3	161582	32	INTRON	INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000469491.5:ENST00000336824.8:ENST00000416957.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	27	2	2.49258	3.307225	4.12187	0.0354689	0.0314608	0.144381	0.137535
chr4	73173883	73173983	2159976	0	-	0.42	(0.408,0.44]	chr4	212788	44	INTRON	INTRON	ANKRD17	ENSG00000132466.20	ENST00000358602.9:ENST00000558247.5:ENST00000330838.10:ENST00000509867.6:ENST00000561029.1:ENST00000559367.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	27	2	2.49258	3.307225	4.12187	0.0354689	0.0314608	0.144381	0.137535
chr6	157881075	157881174	3016346	0	+	0.434343	(0.408,0.44]	chr6	281379	42	INTRON	INTRON	SNX9	ENSG00000130340.17	ENST00000680863.1:ENST00000679814.1:ENST00000680464.1:ENST00000681186.1:ENST00000679732.1:ENST00000681183.1:ENST00000681534.1:ENST00000681651.1:ENST00000680089.1:ENST00000680078.1:ENST00000680974.1:ENST00000680095.1:ENST00000680015.1:ENST00000681138.1:ENST00000392185.8:ENST00000679790.1:ENST00000680495.1:ENST00000679691.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	27	2	2.49258	3.307225	4.12187	0.0354689	0.0314608	0.144381	0.137535
chr6	163564021	163564113	3033209	0	+	0.423913	(0.408,0.44]	chr6	282604	4	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	QKI	ENSG00000112531.17	ENST00000361758.8:ENST00000453779.6:ENST00000275262.11:ENST00000392127.6:ENST00000361752.8:ENST00000361195.6:ENST00000424802.7:ENST00000545607.5:ENST00000537883.5:ENST00000540719.1:ENST00000544361.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	27	2	2.49258	3.307225	4.12187	0.0354689	0.0314608	0.144381	0.137535
chr7	101865241	101865341	3366841	0	+	0.43	(0.408,0.44]	chr7	315215	459	INTRON	INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000497815.5:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000607092.1:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000558469.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	27	2	2.49258	3.307225	4.12187	0.0354689	0.0314608	0.144381	0.137535
chr8	41689453	41689544	3937947	0	-	0.417582	(0.408,0.44]	chr8	360948	5	INTRON	INTRON	ANK1	ENSG00000029534.21	ENST00000347528.8:ENST00000265709.13:ENST00000289734.13:ENST00000520299.5:ENST00000645531.1:ENST00000524227.5:ENST00000518061.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	27	2	2.49258	3.307225	4.12187	0.0354689	0.0314608	0.144381	0.137535
chr7	105035326	105035425	3374829	0	+	0.454545	(0.44,0.476]	chr7	315854	204	INTRON	INTRON	KMT2E	ENSG00000005483.22	ENST00000622386.2:ENST00000257745.9:ENST00000334884.9:ENST00000311117.8:ENST00000478990.5:ENST00000480368.5:ENST00000495267.5:ENST00000476671.5:ENST00000667857.1:ENST00000474203.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	53	2	2.00793	3.3072	4.60647	0.0102339	0.00937685	0.0859966	0.0850389
chr8	105472442	105472542	3838786	0	+	0.36	(0.35,0.378]	chr8	354063	208	INTRON	INTRON	ZFPM2	ENSG00000169946.14	ENST00000407775.7:ENST00000520492.5:ENST00000520027.5:ENST00000524235.5:ENST00000511341.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	141	2	3.0166	3.306985	3.59737	3.3606e-4	4.028e-5	0.0170343	0.00515102
chr6	136285755	136285853	3231087	0	-	0.418367	(0.408,0.44]	chr6	300408	27	INTRON	INTRON	BCLAF1	ENSG00000029363.17	ENST00000640069.1:ENST00000531224.6:ENST00000353331.8:ENST00000527536.5:ENST00000527613.5:ENST00000530767.5:ENST00000527759.5:ENST00000534269.5:ENST00000532384.5:ENST00000530429.5:ENST00000628517.2:ENST00000529826.5:ENST00000528229.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	60	2	3.10641	3.30686	3.50731	0.00555646	8.5918e-4	0.0648867	0.0265787
chr9	136715497	136715596	4221618	0	+	0.545455	(0.515,0.57]	chr9	387630	24	INTRON	INTRON	DIPK1B	ENSG00000165716.11	ENST00000371692.9	protein_coding	protein_coding	protein_coding	protein_coding	2	35	2	2.01737	3.3068350000000004	4.5963	0.0352218	0.00370287	0.137535	0.0561162
chr1	2236353	2236452	2246	0	+	0.424242	(0.408,0.44]	chr1	553	33	INTRON	INTRON	SKI	ENSG00000157933.10	ENST00000378536.5:ENST00000508416.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	60	2	3.20034	3.306785	3.41323	0.00398025	0.00129989	0.0549214	0.0333764
chr9	37262782	37262882	4119085	0	+	0.42	(0.408,0.44]	chr9	375389	759	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000461038.5:ENST00000488607.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	60	2	3.20034	3.306785	3.41323	0.00398025	0.00129989	0.0549214	0.0333764
chr9	100190832	100190932	4177654	0	+	0.42	(0.408,0.44]	chr9	380840	585	INTRON	INTRON	INVS	ENSG00000119509.13	ENST00000262457.7:ENST00000496467.5:ENST00000262456.6:ENST00000466647.5:ENST00000460636.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	60	2	3.20034	3.306785	3.41323	0.00398025	0.00129989	0.0549214	0.0333764
chr5	146472273	146472371	2515760	0	+	0.336735	(0.32,0.35]	chr5	240338	3	INTRON	INTRON	TCERG1	ENSG00000113649.13	ENST00000507175.5:ENST00000296702.9:ENST00000679501.2:ENST00000394421.7:ENST00000549332.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	69	2	3.03597	3.30664	3.57731	0.00832487	7.67492e-4	0.0774402	0.0254532
chr5	157814985	157815081	2758210	0	-	0.364583	(0.35,0.378]	chr5	260291	3	INTRON	INTRON	CLINT1	ENSG00000113282.14	ENST00000523094.5:ENST00000411809.7:ENST00000530742.5:ENST00000523908.5	protein_coding	protein_coding	protein_coding	protein_coding	2	65	2	2.99044	3.3065800000000003	3.62272	0.00894806	5.64719e-4	0.0799922	0.021704
chr5	151773068	151773168	2521802	0	+	0.45	(0.44,0.476]	chr5	241277	4	SS5_PROX	SS5_PROX:INTRON	G3BP1	ENSG00000145907.16	ENST00000523519.5:ENST00000520578.6:ENST00000627077.2:ENST00000678976.1:ENST00000677408.1:ENST00000678070.1:ENST00000678964.1:ENST00000678925.1:ENST00000394123.7:ENST00000676978.1:ENST00000679289.1:ENST00000677493.1:ENST00000676644.1:ENST00000677757.1:ENST00000522761.6:ENST00000677909.1:ENST00000676827.1:ENST00000520177.6:ENST00000676634.1:ENST00000678854.1:ENST00000677602.1:ENST00000519832.1:ENST00000518726.5:ENST00000676911.1:ENST00000356245.8:ENST00000678646.1:ENST00000677381.1:ENST00000678904.1:ENST00000678910.1:ENST00000678101.1:ENST00000677105.1:ENST00000676813.1:ENST00000522367.6:ENST00000517947.5:ENST00000507878.7:ENST00000520006.2:ENST00000678369.1:ENST00000677433.1:ENST00000678564.1:ENST00000677252.1:ENST00000677369.1:ENST00000677284.1:ENST00000676894.1:ENST00000677923.1:ENST00000677323.1:ENST00000522666.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	40	2	2.08277	3.306555	4.53034	0.0309998	0.00672609	0.13151	0.0738715
chr2	147937015	147937115	1241919	0	-	0.29	(0.28,0.32]	chr2	131804	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	ORC4	ENSG00000115947.14	ENST00000392857.10:ENST00000264169.6:ENST00000536575.5:ENST00000535373.5:ENST00000540442.5:ENST00000488761.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	42	2	2.0243	3.306525	4.58875	0.0364967	0.0230574	0.153759	0.118056
chr13	45355978	45356077	5480090	0	+	0.474747	(0.44,0.476]	chr13	525023	36	INTRON	INTRON	TPT1-AS1	ENSG00000170919.16	ENST00000517509.5:ENST00000658870.1:ENST00000653307.1:ENST00000661180.1:ENST00000655984.1:ENST00000654229.1:ENST00000519454.6:ENST00000412946.6:ENST00000665586.1:ENST00000520590.5:ENST00000521336.6:ENST00000655666.1:ENST00000669281.1:ENST00000520622.6:ENST00000657761.1:ENST00000668209.1:ENST00000659577.1:ENST00000523506.6:ENST00000661291.1:ENST00000655385.1:ENST00000652823.1:ENST00000524062.5:ENST00000655124.1:ENST00000662212.1:ENST00000522859.5:ENST00000664881.1:ENST00000669627.1:ENST00000520924.5:ENST00000618947.1:ENST00000521507.5:ENST00000523445.5:ENST00000520310.6:ENST00000667948.1:ENST00000668256.1:ENST00000654626.1:ENST00000660680.1:ENST00000665079.1:ENST00000662614.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	4	54	2	1.42812	3.3064649999999998	5.18481	0.0673866	6.21872e-4	0.183355	0.0223951
chr5	616112	616211	2313413	0	+	0.363636	(0.35,0.378]	chr5	223834	33	INTRON	INTRON	CEP72	ENSG00000112877.8	ENST00000264935.6	protein_coding	protein_coding	protein_coding	protein_coding	3	88	2	2.52395	3.30646	4.08897	0.00824736	5.3761e-5	0.0773378	0.00600135
chr8	43124063	43124161	3746477	0	+	0.255102	[0,0.28]	chr8	348632	13	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	POMK	ENSG00000185900.11	ENST00000676193.1:ENST00000674937.1:ENST00000674676.1:ENST00000675675.1:ENST00000675322.1:ENST00000674646.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	121	2	2.56073	3.30642	4.05211	0.00743095	2.98802e-4	0.0772645	0.0160416
chr1	151209834	151209934	224982	0	+	0.45	(0.44,0.476]	chr1	25634	103	INTRON	INTRON	PIP5K1A	ENSG00000143398.20	ENST00000447555.5:ENST00000349792.9:ENST00000368888.9:ENST00000409426.5:ENST00000368890.8:ENST00000441902.6:ENST00000424999.1:ENST00000454769.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	36	2	2.00609	3.30628	4.60647	0.0360127	0.0102339	0.152355	0.0850389
chr2	177311428	177311528	1276324	0	-	0.47	(0.44,0.476]	chr2	134737	1	SS3_PROX	SS3_PROX:INTRON	NFE2L2:ENSG00000213963	ENSG00000116044.16:ENSG00000213963.6	ENST00000464747.5:ENST00000586532.5:ENST00000397057.6:ENST00000456746.5:ENST00000430416.5:ENST00000627798.2:ENST00000625449.2:ENST00000443132.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	2	36	2	2.00609	3.30628	4.60647	0.0360127	0.0102339	0.152355	0.0850389
chr2	197836712	197836812	969423	0	+	0.46	(0.44,0.476]	chr2	104858	260	INTRON	INTRON	PLCL1	ENSG00000115896.16	ENST00000428675.6:ENST00000435320.1:ENST00000487695.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	36	2	2.00609	3.30628	4.60647	0.0360127	0.0102339	0.152355	0.0850389
chr3	100731641	100731741	1468160	0	+	0.47	(0.44,0.476]	chr3	153863	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	TFG	ENSG00000114354.15	ENST00000675047.1:ENST00000490574.6:ENST00000675543.1:ENST00000676308.1:ENST00000675499.1:ENST00000674699.1:ENST00000418917.7:ENST00000675553.1:ENST00000620299.5:ENST00000675246.1:ENST00000675692.1:ENST00000676276.1:ENST00000676054.1:ENST00000675890.1:ENST00000675011.1:ENST00000675586.1:ENST00000674645.1:ENST00000675958.1:ENST00000674798.1:ENST00000676010.1:ENST00000675591.1:ENST00000675420.1:ENST00000674615.1:ENST00000676431.1:ENST00000674758.1:ENST00000240851.9:ENST00000675243.1:ENST00000676111.1:ENST00000476228.5:ENST00000463568.6:ENST00000676395.1:ENST00000487505.6:ENST00000615993.2:ENST00000676455.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	36	2	2.00609	3.30628	4.60647	0.0360127	0.0102339	0.152355	0.0850389
chr4	183643859	183643958	2303161	0	-	0.454545	(0.44,0.476]	chr4	222690	20	INTRON	INTRON	RWDD4	ENSG00000182552.15	ENST00000326397.10:ENST00000327570.13:ENST00000510968.5:ENST00000510702.5:ENST00000512740.1:ENST00000514322.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	36	2	2.00609	3.30628	4.60647	0.0360127	0.0102339	0.152355	0.0850389
chr18	77980335	77980434	6990158	0	-	0.434343	(0.408,0.44]	chr18	691894	3	INTRON	INTRON	LINC01029	ENSG00000265843.3	ENST00000657337.1:ENST00000669341.1:ENST00000671271.1:ENST00000668585.1:ENST00000666771.1:ENST00000667842.1:ENST00000661306.1:ENST00000662598.1:ENST00000662109.1:ENST00000662085.1:ENST00000583106.1:ENST00000582805.1:ENST00000656930.1	lncRNA	lncRNA	lncRNA	lncRNA	22	462	2	2.56337	3.306255	4.04914	2.59264e-5	9.96977e-9	0.00422093	3.51053e-5
chr15	92918986	92919085	6103881	0	+	0.494949	(0.476,0.515]	chr15	581405	36	INTRON	INTRON	ENSG00000279765:CHD2	ENSG00000279765.3:ENSG00000173575.22	ENST00000629685.2:ENST00000630790.1:ENST00000626874.2:ENST00000394196.9:ENST00000635856.1:ENST00000420239.7:ENST00000628375.2:ENST00000625990.3:ENST00000626782.2:ENST00000629136.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	10	242	2	3.25631	3.306175	3.35604	1.23922e-5	2.13407e-6	0.00280409	9.07669e-4
chr9	92242920	92243018	4286799	0	-	0.489796	(0.476,0.515]	chr9	394116	7	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	IARS1	ENSG00000196305.19	ENST00000375643.7:ENST00000443024.7:ENST00000447699.7:ENST00000683537.1:ENST00000684726.1:ENST00000683192.1:ENST00000683565.1:ENST00000682756.1:ENST00000684542.1:ENST00000683793.1:ENST00000683817.1:ENST00000682141.1:ENST00000682893.1:ENST00000684557.1:ENST00000498025.2:ENST00000682156.1:ENST00000683017.1:ENST00000682521.1:ENST00000627121.3:ENST00000683469.1:ENST00000683495.1:ENST00000682578.1:ENST00000682533.1:ENST00000472894.2:ENST00000684757.1:ENST00000684445.1:ENST00000683376.1:ENST00000683679.1:ENST00000683119.1:ENST00000684594.1:ENST00000684267.1:ENST00000683477.1:ENST00000684232.1:ENST00000684328.1:ENST00000375627.1:ENST00000474340.1:ENST00000684575.1:ENST00000467876.2:ENST00000473915.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	50	2	1.63962	3.306075	4.97253	0.0346854	0.00311573	0.148144	0.0498063
chr3	171293872	171293972	1865783	0	-	0.47	(0.44,0.476]	chr3	186980	653	INTRON	INTRON	TNIK	ENSG00000154310.17	ENST00000436636.7:ENST00000341852.10:ENST00000284483.12:ENST00000475336.5:ENST00000357327.9:ENST00000460047.5:ENST00000488470.5:ENST00000470834.5	protein_coding	protein_coding	protein_coding	protein_coding	2	36	2	1.85146	3.30607	4.76068	0.0545846	0.00653414	0.182529	0.0699952
chr3	196365554	196365652	1898983	0	-	0.459184	(0.44,0.476]	chr3	190164	25	INTRON	INTRON	UBXN7	ENSG00000163960.12	ENST00000296328.9:ENST00000429160.1:ENST00000428095.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	36	2	1.85146	3.30607	4.76068	0.0545846	0.00653414	0.182529	0.0699952
chr1	235265049	235265149	663231	0	-	0.47	(0.44,0.476]	chr1	78552	39	INTRON	INTRON	ARID4B	ENSG00000054267.22	ENST00000349213.7:ENST00000366603.6:ENST00000264183.9:ENST00000421364.5:ENST00000491632.5:ENST00000418304.1:ENST00000466653.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	37	2	2.27304	3.306015	4.33899	0.0206616	0.0158915	0.110999	0.109464
chr7	26200046	26200142	3506234	0	-	0.40625	(0.378,0.408]	chr7	327192	10	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	HNRNPA2B1	ENSG00000122566.22	ENST00000679318.1:ENST00000677339.1:ENST00000678501.1:ENST00000676903.1:ENST00000608362.2:ENST00000677631.1:ENST00000676749.1:ENST00000677574.1:ENST00000679123.1:ENST00000677906.1:ENST00000476233.2:ENST00000677669.1:ENST00000677321.1:ENST00000678277.1:ENST00000677571.1:ENST00000679124.1:ENST00000676932.1:ENST00000678973.1:ENST00000678183.1:ENST00000679021.1:ENST00000678035.1:ENST00000677075.1:ENST00000678075.1:ENST00000678631.1:ENST00000678998.1:ENST00000490912.6:ENST00000354667.8:ENST00000618183.5:ENST00000677839.1:ENST00000677037.1:ENST00000678449.1:ENST00000679001.1:ENST00000678962.1:ENST00000676524.1:ENST00000678935.1:ENST00000678675.1:ENST00000676746.1:ENST00000356674.8:ENST00000678431.1:ENST00000678697.1:ENST00000678779.1:ENST00000676497.1:ENST00000677396.1:ENST00000360787.8:ENST00000679243.1:ENST00000677656.1:ENST00000463181.5:ENST00000678884.1:ENST00000495810.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	17	433	2	3.2164	3.30586	3.39532	9.6602e-7	5.72804e-7	6.0856e-4	4.09435e-4
chr1	40091810	40091899	428558	0	-	0.404494	(0.378,0.408]	chr1	52112	4	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PPT1	ENSG00000131238.18	ENST00000641471.1:ENST00000642050.2:ENST00000641083.1:ENST00000641319.1:ENST00000530704.6:ENST00000433473.8:ENST00000439754.6:ENST00000449045.7:ENST00000641691.1:ENST00000641236.1:ENST00000529905.5:ENST00000641924.1:ENST00000527311.7:ENST00000372779.9:ENST00000526547.2:ENST00000641548.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	41	2	2.00398	3.3058449999999997	4.60771	0.0393906	0.00567576	0.143072	0.0678837
chr6	53289210	53289306	3107585	0	-	0.40625	(0.378,0.408]	chr6	291020	9	INTRON	INTRON	ELOVL5	ENSG00000012660.14	ENST00000370918.8:ENST00000542638.5:ENST00000304434.11:ENST00000485336.5:ENST00000465983.5:ENST00000486973.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	41	2	2.00398	3.3058449999999997	4.60771	0.0393906	0.00567576	0.143072	0.0678837
chr6	163426641	163426739	3031823	0	+	0.387755	(0.378,0.408]	chr6	282559	27	INTRON	INTRON	QKI	ENSG00000112531.17	ENST00000361758.8:ENST00000453779.6:ENST00000275262.11:ENST00000392127.6:ENST00000361752.8:ENST00000361195.6:ENST00000424802.7:ENST00000545607.5:ENST00000544436.5:ENST00000537041.5:ENST00000537124.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	37	2	2.11103	3.305795	4.50056	0.0266911	0.015974	0.134419	0.101453
chr7	131338181	131338281	3416545	0	+	0.39	(0.378,0.408]	chr7	319187	98	INTRON	INTRON	MKLN1	ENSG00000128585.18	ENST00000421797.6:ENST00000416992.6:ENST00000429546.5:ENST00000446815.5:ENST00000494286.5:ENST00000352689.11:ENST00000494785.5:ENST00000458153.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	37	2	2.11103	3.305795	4.50056	0.0266911	0.015974	0.134419	0.101453
chr5	78134081	78134180	2649525	0	-	0.484848	(0.476,0.515]	chr5	251700	44	INTRON	INTRON	AP3B1	ENSG00000132842.15	ENST00000519295.6:ENST00000255194.11:ENST00000695515.1:ENST00000695454.1:ENST00000695511.1:ENST00000695453.1:ENST00000695455.1:ENST00000695513.1:ENST00000695488.1:ENST00000695450.1:ENST00000695507.1:ENST00000695512.1:ENST00000695510.1:ENST00000695451.1:ENST00000695447.1:ENST00000695505.1:ENST00000519888.6:ENST00000695514.1:ENST00000517940.2:ENST00000517561.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	102	2	3.29074	3.305755	3.32077	0.00272563	3.02034e-5	0.0467523	0.0043803
chr11	67197341	67197441	4813234	0	+	0.51	(0.476,0.515]	chr11	448134	151	INTRON	INTRON	KDM2A	ENSG00000173120.15	ENST00000529006.7:ENST00000398645.6:ENST00000308783.9	protein_coding	protein_coding	protein_coding	protein_coding	2	36	2	1.91817	3.305685	4.6932	0.0459211	0.00753088	0.164984	0.074841
chr12	116055686	116055786	5423323	0	-	0.48	(0.476,0.515]	chr12	518245	327	INTRON	INTRON	MED13L	ENSG00000123066.9	ENST00000281928.9:ENST00000650226.1:ENST00000648737.1:ENST00000548743.2:ENST00000647567.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	36	2	1.91817	3.305685	4.6932	0.0459211	0.00753088	0.164984	0.074841
chr16	4719252	4719352	6438105	0	-	0.48	(0.476,0.515]	chr16	619996	13	INTRON	INTRON	ANKS3	ENSG00000168096.15	ENST00000450067.6:ENST00000614075.4:ENST00000304283.9:ENST00000592077.5:ENST00000590193.5:ENST00000446014.6:ENST00000591653.5:ENST00000590803.5:ENST00000585773.5:ENST00000590730.5:ENST00000586605.5:ENST00000592421.5:ENST00000592068.5:ENST00000586166.5:ENST00000592698.5:ENST00000586159.5:ENST00000586632.1:ENST00000589065.5:ENST00000593120.5:ENST00000592711.5:ENST00000591281.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	36	2	1.91817	3.305685	4.6932	0.0459211	0.00753088	0.164984	0.074841
chr17	2477086	2477185	6705872	0	-	0.50505	(0.476,0.515]	chr17	656594	14	INTRON	INTRON	METTL16	ENSG00000127804.13	ENST00000263092.11:ENST00000571669.6:ENST00000576556.5:ENST00000574752.5:ENST00000571298.5:ENST00000576976.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	36	2	1.91817	3.305685	4.6932	0.0459211	0.00753088	0.164984	0.074841
chr5	274146	274244	2312643	0	+	0.479592	(0.476,0.515]	chr5	223710	9	INTRON	INTRON	PDCD6	ENSG00000249915.9	ENST00000614778.4:ENST00000618970.4:ENST00000513582.5:ENST00000264933.9:ENST00000505221.5:ENST00000507528.5:ENST00000509581.5:ENST00000505526.1:ENST00000507473.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	36	2	1.91817	3.305685	4.6932	0.0459211	0.00753088	0.164984	0.074841
chr18	2783568	2783665	6866202	0	+	0.494845	(0.476,0.515]	chr18	680190	9	EXON_MRNA	EXON_MRNA:INTRON	SMCHD1	ENSG00000101596.17	ENST00000320876.11:ENST00000688342.1:ENST00000577880.5:ENST00000584897.5:ENST00000686763.1:ENST00000686864.1:ENST00000688708.1:ENST00000645355.1:ENST00000688964.1:ENST00000685656.1:ENST00000689034.1:ENST00000642953.1:ENST00000689800.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	79	2	3.00507	3.30567	3.60627	8.38796e-4	7.49088e-4	0.0263691	0.0251179
chr17	1846075	1846174	6546142	0	+	0.414141	(0.408,0.44]	chr17	634943	10	INTRON	INTRON	RPA1	ENSG00000132383.12	ENST00000571058.5:ENST00000570451.5:ENST00000254719.10:ENST00000571725.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	29	2	2.27698	3.30549	4.334	0.0583528	0.011982	0.167723	0.0962115
chr2	55399198	55399298	1124189	0	-	0.43	(0.408,0.44]	chr2	120575	1	SS5_PROX	SS5_PROX:INTRON	CCDC88A	ENSG00000115355.18	ENST00000263630.13:ENST00000436346.7:ENST00000336838.10:ENST00000642200.1:ENST00000413716.7:ENST00000643413.1:ENST00000647401.1:ENST00000645311.1:ENST00000646796.1:ENST00000645571.1:ENST00000645477.1:ENST00000645072.1:ENST00000644890.1:ENST00000644630.1:ENST00000647098.1:ENST00000642890.1:ENST00000647517.1:ENST00000645031.1:ENST00000645529.1:ENST00000644033.1:ENST00000644193.1:ENST00000647341.1:ENST00000430086.1:ENST00000644127.1:ENST00000644157.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	29	2	2.27698	3.30549	4.334	0.0583528	0.011982	0.167723	0.0962115
chr4	710755	710854	1907837	0	+	0.424242	(0.408,0.44]	chr4	191202	44	INTRON	INTRON	PCGF3	ENSG00000185619.18	ENST00000419774.5:ENST00000362003.9:ENST00000475288.5:ENST00000470161.6:ENST00000427463.5:ENST00000482726.5:ENST00000400151.6:ENST00000430644.5:ENST00000484141.5:ENST00000440452.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	29	2	2.27698	3.30549	4.334	0.0583528	0.011982	0.167723	0.0962115
chr7	27810162	27810262	3294066	0	+	0.41	(0.408,0.44]	chr7	306028	66	INTRON	INTRON	TAX1BP1	ENSG00000106052.14	ENST00000543117.5:ENST00000433216.6:ENST00000265393.10:ENST00000409980.5:ENST00000416801.6:ENST00000396319.7:ENST00000457186.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	29	2	2.27698	3.30549	4.334	0.0583528	0.011982	0.167723	0.0962115
chr7	75717266	75717366	3561034	0	-	0.42	(0.408,0.44]	chr7	331784	622	INTRON	INTRON	HIP1	ENSG00000127946.17	ENST00000336926.11:ENST00000434438.6:ENST00000485723.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	29	2	2.27698	3.30549	4.334	0.0583528	0.011982	0.167723	0.0962115
chr11	86038799	86038899	5014540	0	-	0.46	(0.44,0.476]	chr11	473022	68	INTRON	INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000630913.2:ENST00000528398.5:ENST00000356360.9:ENST00000534412.5:ENST00000531558.1:ENST00000531930.5:ENST00000532041.5:ENST00000525162.5:ENST00000528256.1:ENST00000528411.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	60	2	2.97451	3.3054449999999997	3.63638	0.00853825	4.74104e-4	0.0780043	0.0196816
chr19	40045978	40046078	7182824	0	-	0.3	(0.28,0.32]	chr19	726353	90	INTRON	INTRON	ZNF780B	ENSG00000128000.17	ENST00000434248.6:ENST00000221355.10:ENST00000598845.5	protein_coding	protein_coding	protein_coding	protein_coding	3	100	2	3.06094	3.3054449999999997	3.54995	0.00157396	8.54457e-4	0.0361918	0.0265194
chr1	96788344	96788443	168618	0	+	0.323232	(0.32,0.35]	chr1	18249	27	INTRON	INTRON	PTBP2	ENSG00000117569.19	ENST00000482253.5:ENST00000675735.1:ENST00000609116.5:ENST00000674951.1:ENST00000675080.1:ENST00000426398.3:ENST00000370197.5:ENST00000370198.5:ENST00000476419.5:ENST00000676292.1:ENST00000676096.1:ENST00000675365.1:ENST00000674579.1:ENST00000675401.1:ENST00000459735.5:ENST00000476783.5:ENST00000492905.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	93	2	2.72473	3.305415	3.8861	0.00433316	1.80108e-4	0.0579683	0.0116696
chr3	180945276	180945375	1568936	0	+	0.313131	(0.28,0.32]	chr3	162382	97	INTRON	INTRON	FXR1	ENSG00000114416.18	ENST00000469882.5:ENST00000484790.5:ENST00000465551.5:ENST00000305586.11:ENST00000475315.5:ENST00000357559.9:ENST00000468861.5:ENST00000491062.5:ENST00000479176.5:ENST00000445140.6:ENST00000472339.5:ENST00000484958.5:ENST00000480918.5:ENST00000484042.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	65	2	1.45717	3.3053749999999997	5.15358	0.0472947	0.0052282	0.16913	0.0633615
chr9	4807688	4807788	4095013	0	+	0.53	(0.515,0.57]	chr9	373155	141	INTRON	INTRON	RCL1	ENSG00000120158.12	ENST00000381750.9:ENST00000381732.3:ENST00000442869.5:ENST00000473230.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	52	2	3.03037	3.3053600000000003	3.58035	0.00608732	5.21239e-4	0.0676501	0.0204523
chrX	20130215	20130315	7772088	0	-	0.46	(0.44,0.476]	chrX	794412	3	SS5_PROX	SS5_PROX:INTRON	EIF1AX	ENSG00000173674.11	ENST00000379607.10:ENST00000379593.1	protein_coding	protein_coding	protein_coding	protein_coding	3	81	2	2.97428	3.3053299999999997	3.63638	0.00125568	4.74104e-4	0.0323608	0.0196816
chr3	47717975	47718075	1684432	0	-	0.6	(0.57,1]	chr3	172082	31	INTRON	INTRON	SMARCC1	ENSG00000173473.11	ENST00000254480.10:ENST00000425518.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	35	2	2.91889	3.305285	3.69168	0.00719009	2.1608e-4	0.0756118	0.0134537
chr20	49081568	49081665	7284152	0	+	0.350515	(0.35,0.378]	chr20	740884	26	INTRON	INTRON	CSE1L	ENSG00000124207.17	ENST00000396192.7:ENST00000262982.3	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	2.53856	3.3052099999999998	4.07186	0.0326077	0.0279478	0.137011	0.133687
chr4	163112083	163112182	2280751	0	-	0.353535	(0.35,0.378]	chr4	221548	14	INTRON	INTRON	NAF1	ENSG00000145414.9	ENST00000509434.5	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	2.53856	3.3052099999999998	4.07186	0.0326077	0.0279478	0.137011	0.133687
chr2	44183733	44183833	764705	0	+	0.54	(0.515,0.57]	chr2	86683	141	INTRON	INTRON	PPM1B	ENSG00000138032.21	ENST00000419807.5:ENST00000282412.9:ENST00000378540.8:ENST00000378551.6:ENST00000409432.7:ENST00000409486.6:ENST00000345249.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	52	2	3.25412	3.305105	3.35609	0.00224554	0.00174131	0.0435144	0.0375363
chr16	14915560	14915659	6304705	0	+	0.535354	(0.515,0.57]	chr16	603076	33	INTRON	INTRON	PKD1P3	ENSG00000183458.14	ENST00000534164.6	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	5	95	2	2.43901	3.30502	4.17103	0.00146205	2.07632e-5	0.0346249	0.00353137
chr10	13210210	13210310	4395856	0	+	0.47	(0.44,0.476]	chr10	405720	10	UTR3	UTR3:EXON_MRNA	MCM10	ENSG00000065328.17	ENST00000378714.8:ENST00000378694.1	protein_coding	protein_coding	protein_coding	protein_coding	2	63	2	2.9586	3.3049749999999998	3.65135	0.00758318	6.34922e-4	0.0773151	0.023163
chr9	135959739	135959837	4372556	0	-	0.55102	(0.515,0.57]	chr9	402553	40	INTRON	INTRON	UBAC1	ENSG00000130560.9	ENST00000371756.4:ENST00000478485.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	54	2	2.76354	3.304895	3.84625	0.0147344	1.34155e-4	0.0983813	0.00998237
chr16	75016467	75016567	6389593	0	+	0.49	(0.476,0.515]	chr16	614482	137	INTRON	INTRON	ZNRF1	ENSG00000186187.12	ENST00000335325.9:ENST00000320619.10:ENST00000567962.5:ENST00000566250.5:ENST00000564320.1:ENST00000568511.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	79	2	3.07601	3.304815	3.53362	0.00102391	5.95211e-4	0.029231300000000002	0.0221865
chr1	506299	506398	355625	0	-	0.454545	(0.44,0.476]	chr1	41008	8	INTRON	INTRON	ENSG00000237094	ENSG00000237094.12	ENST00000641303.1:ENST00000641063.1:ENST00000641049.1:ENST00000642124.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	3	47	2	1.61163	3.304725	4.99782	0.0598319	0.0013223	0.169278	0.0333932
chr9	91873562	91873662	4284498	0	-	0.41	(0.408,0.44]	chr9	393909	974	INTRON	INTRON	ROR2	ENSG00000169071.15	ENST00000375715.5:ENST00000375708.4:ENST00000550066.5:ENST00000495386.5:ENST00000546883.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	129	2	2.90747	3.304675	3.70188	4.77325e-4	1.79949e-5	0.0202392	0.00323573
chr20	21314626	21314726	7248250	0	+	0.43	(0.408,0.44]	chr20	735885	108	INTRON	INTRON	XRN2	ENSG00000088930.8	ENST00000377191.5	protein_coding	protein_coding	protein_coding	protein_coding	2	60	2	3.05705	3.3045999999999998	3.55215	0.00658331	7.01039e-4	0.0701901	0.0241881
chr19	2122761	2122857	7115246	0	-	0.5	(0.476,0.515]	chr19	715206	5	INTRON	INTRON	AP3D1	ENSG00000065000.19	ENST00000643116.3:ENST00000345016.9:ENST00000644728.1:ENST00000643010.1:ENST00000590683.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	60	2	2.9435	3.304575	3.66565	0.00929849	4.18031e-4	0.0817766	0.0182827
chr16	29604033	29604132	6471641	0	-	0.474747	(0.44,0.476]	chr16	625301	92	INTRON	INTRON	ENSG00000288632	ENSG00000288632.1	ENST00000675579.1	lncRNA	lncRNA	lncRNA	lncRNA	5	128	2	2.8424	3.304545	3.76669	6.35745e-4	1.20182e-5	0.0231636	0.00257265
chr12	50411604	50411704	5136440	0	+	0.37	(0.35,0.378]	chr12	484352	84	INTRON	INTRON	LARP4	ENSG00000161813.23	ENST00000550522.5:ENST00000293618.12:ENST00000429001.7:ENST00000398473.7:ENST00000548174.5:ENST00000548697.5:ENST00000548993.5:ENST00000522085.5:ENST00000518444.5:ENST00000551886.5:ENST00000523389.5:ENST00000518561.5:ENST00000347328.9:ENST00000550260.1:ENST00000517559.5:ENST00000552445.1	protein_coding	protein_coding	protein_coding	protein_coding	2	38	2	2.04358	3.3045400000000003	4.5655	0.0329533	0.0155464	0.145171	0.100909
chr18	9581729	9581828	6945977	0	-	0.363636	(0.35,0.378]	chr18	686991	42	INTRON	INTRON	PPP4R1	ENSG00000154845.16	ENST00000400555.7:ENST00000400556.8:ENST00000285124.12:ENST00000580583.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	38	2	2.04358	3.3045400000000003	4.5655	0.0329533	0.0155464	0.145171	0.100909
chr3	128728158	128728257	1497230	0	+	0.353535	(0.35,0.378]	chr3	156330	14	INTRON	INTRON	RAB7A	ENSG00000075785.14	ENST00000676214.1:ENST00000675864.1:ENST00000675712.1:ENST00000676425.1:ENST00000490093.6:ENST00000675342.1:ENST00000265062.8:ENST00000674748.1:ENST00000493186.6:ENST00000482525.5:ENST00000491681.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	38	2	2.04358	3.3045400000000003	4.5655	0.0329533	0.0155464	0.145171	0.100909
chr22	21861223	21861323	7561322	0	-	0.49	(0.476,0.515]	chr22	773388	530	INTRON	INTRON	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	8	196	2	3.0275	3.304495	3.58149	3.90649e-5	5.60094e-6	0.00533644	0.00164301
chr5	111506022	111506118	2702737	0	-	0.5	(0.476,0.515]	chr5	254412	3	SS5_PROX	SS5_PROX:INTRON	STARD4	ENSG00000164211.13	ENST00000296632.8:ENST00000512160.5:ENST00000511137.5:ENST00000502931.5:ENST00000505803.5:ENST00000502322.5:ENST00000509887.5:ENST00000511569.5:ENST00000511436.5:ENST00000510346.5:ENST00000455172.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	61	2	2.82673	3.304425	3.78212	0.0134403	2.36145e-4	0.0946278	0.0136195
chr9	92272002	92272102	4287122	0	-	0.3	(0.28,0.32]	chr9	394222	1	SS3_PROX	SS3_PROX:INTRON	IARS1	ENSG00000196305.19	ENST00000375643.7:ENST00000443024.7:ENST00000447699.7:ENST00000683537.1:ENST00000684726.1:ENST00000683192.1:ENST00000683565.1:ENST00000682756.1:ENST00000684542.1:ENST00000683793.1:ENST00000683817.1:ENST00000682141.1:ENST00000682893.1:ENST00000684557.1:ENST00000498025.2:ENST00000682156.1:ENST00000627121.3:ENST00000683469.1:ENST00000683495.1:ENST00000682578.1:ENST00000682533.1:ENST00000472894.2:ENST00000684757.1:ENST00000684445.1:ENST00000683376.1:ENST00000683679.1:ENST00000683119.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	73	2	1.50806	3.3043750000000003	5.10069	0.0317995	0.00610574	0.14477	0.0676501
chr6	12024000	12024099	2814343	0	+	0.292929	(0.28,0.32]	chr6	264794	32	INTRON	INTRON	HIVEP1	ENSG00000095951.17	ENST00000491710.5:ENST00000487103.5:ENST00000379388.7:ENST00000627968.2:ENST00000541134.5:ENST00000442081.6:ENST00000478545.1:ENST00000484210.1	protein_coding	protein_coding	protein_coding	protein_coding	3	100	2	3.11673	3.304355	3.49198	0.00195595	6.61685e-4	0.0400756	0.0232856
chr4	159135197	159135297	2073821	0	+	0.47	(0.44,0.476]	chr4	205172	306	INTRON	INTRON	RAPGEF2	ENSG00000109756.10	ENST00000644474.1:ENST00000691494.1:ENST00000505478.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	63	2	1.64357	3.30424	4.96491	0.0177224	0.0034249	0.11319	0.0517761
chr11	73831070	73831170	4825606	0	+	0.51	(0.476,0.515]	chr11	450328	49	INTRON	INTRON	MRPL48	ENSG00000175581.14	ENST00000508278.6:ENST00000310614.12:ENST00000540162.5:ENST00000544140.5:ENST00000544819.5:ENST00000497094.6:ENST00000411840.6:ENST00000398483.7:ENST00000535277.5:ENST00000542303.5:ENST00000537007.5:ENST00000543058.1:ENST00000543374.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	44	2	1.91525	3.3042249999999997	4.6932	0.0232571	0.00753088	0.127416	0.074841
chr12	50999915	51000014	5324512	0	-	0.50505	(0.476,0.515]	chr12	507692	1	SS5_PROX	SS5_PROX:INTRON	SLC11A2	ENSG00000110911.17	ENST00000547688.7:ENST00000644495.1:ENST00000643884.1:ENST00000546636.5:ENST00000547198.5:ENST00000646264.1:ENST00000394904.9:ENST00000262052.9:ENST00000643123.1:ENST00000646740.1:ENST00000642227.1:ENST00000541174.6:ENST00000545993.7:ENST00000546743.5:ENST00000547510.5:ENST00000546488.5:ENST00000547579.5:ENST00000550714.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	44	2	1.91525	3.3042249999999997	4.6932	0.0232571	0.00753088	0.127416	0.074841
chr12	104302375	104302475	5210164	0	+	0.39	(0.378,0.408]	chr12	493210	109	INTRON	INTRON	TXNRD1	ENSG00000198431.17	ENST00000525566.6:ENST00000526266.5:ENST00000503506.6:ENST00000526691.5:ENST00000531691.5:ENST00000526390.5:ENST00000531689.5:ENST00000529546.5:ENST00000529751.1:ENST00000528079.6:ENST00000526580.5:ENST00000529784.5:ENST00000524698.5:ENST00000527688.5:ENST00000527335.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	51	2	1.66594	3.30422	4.9425	0.0320222	0.00452675	0.144995	0.0595107
chr17	21634916	21635015	6578503	0	+	0.292929	(0.28,0.32]	chr17	639549	17	INTRON	INTRON	ENSG00000260157	ENSG00000260157.3	ENST00000618784.1:ENST00000562547.3	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	3	55	2	2.18212	3.3042100000000003	4.4263	0.0330296	0.010265700000000001	0.133816	0.089002
chr4	75649024	75649118	2161847	0	-	0.287234	(0.28,0.32]	chr4	212969	4	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	G3BP2	ENSG00000138757.15	ENST00000676666.1:ENST00000678062.1:ENST00000678100.1:ENST00000678122.1:ENST00000677265.1:ENST00000678971.1:ENST00000679281.1:ENST00000677333.1:ENST00000676470.1:ENST00000677620.1:ENST00000677606.1:ENST00000678798.1:ENST00000677583.1:ENST00000678447.1:ENST00000678875.1:ENST00000678244.1:ENST00000676974.1:ENST00000677003.1:ENST00000677889.1:ENST00000678329.1:ENST00000676584.1:ENST00000678552.1:ENST00000677192.1:ENST00000677727.1:ENST00000678265.1:ENST00000676839.1:ENST00000677876.1:ENST00000678123.1:ENST00000678578.1:ENST00000677171.1:ENST00000679329.1:ENST00000395719.7:ENST00000359707.9:ENST00000677060.1:ENST00000679294.1:ENST00000677201.1:ENST00000677952.1:ENST00000677125.1:ENST00000678273.1:ENST00000357854.7:ENST00000677162.1:ENST00000677566.1:ENST00000677970.1:ENST00000507133.2:ENST00000678642.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	55	2	2.18212	3.3042100000000003	4.4263	0.0330296	0.010265700000000001	0.133816	0.089002
chr7	99037987	99038087	3582066	0	-	0.56	(0.515,0.57]	chr7	333617	2	SS5_PROX	SS5_PROX:INTRON	SMURF1	ENSG00000198742.10	ENST00000361368.7:ENST00000361125.1	protein_coding	protein_coding	protein_coding	protein_coding	2	54	2	2.98677	3.304205	3.62164	0.00632549	5.41944e-4	0.0722266	0.0215026
chr17	57279617	57279717	6632980	0	+	0.39	(0.378,0.408]	chr17	648006	18	EXON_MRNA	EXON_MRNA:INTRON	MSI2:ENSG00000279555	ENSG00000153944.12:ENSG00000279555.1	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000581776.5:ENST00000674961.1:ENST00000582453.5:ENST00000675656.1:ENST00000322684.7:ENST00000579590.5:ENST00000676073.1:ENST00000675822.1:ENST00000623762.1	protein_coding	protein_coding	protein_coding:TEC	protein_coding:nonsense_mediated_decay:TEC:processed_transcript	4	99	2	2.90102	3.3041549999999997	3.70729	5.5156e-4	3.47934e-4	0.0216014	0.0166215
chr19	1591984	1592065	7112517	0	-	0.580247	(0.57,1]	chr19	714544	1	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	MBD3:ENSG00000267059	ENSG00000071655.18:ENSG00000267059.2	ENST00000434436.8:ENST00000156825.5:ENST00000585937.1:ENST00000585967.5:ENST00000592965.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	44	2	3.04906	3.30413	3.5592	4.97245e-4	4.21089e-4	0.0206993	0.0183576
chr9	69254837	69254930	4138965	0	+	0.322581	(0.32,0.35]	chr9	377213	6	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	TJP2	ENSG00000119139.21	ENST00000636438.1:ENST00000377245.9:ENST00000348208.9:ENST00000649114.1:ENST00000649943.1:ENST00000650333.1:ENST00000650522.1:ENST00000649783.1:ENST00000649134.1:ENST00000650084.1:ENST00000650460.1:ENST00000648042.1:ENST00000649927.1:ENST00000498204.2:ENST00000650353.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	73	2	2.6321	3.3040000000000003	3.9759	0.0268	1.14401e-4	0.123349	0.00914947
chr1	153663620	153663698	556312	0	-	0.346154	(0.32,0.35]	chr1	65860	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ILF2	ENSG00000143621.17	ENST00000615950.4:ENST00000361891.9:ENST00000480213.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	33	2	2.4458	3.30383	4.16186	0.0425977	0.026079	0.148082	0.133676
chr12	98600768	98600867	5199062	0	+	0.343434	(0.32,0.35]	chr12	491877	2	SS3_PROX	SS3_PROX:INTRON	SLC25A3	ENSG00000075415.15	ENST00000401722.7:ENST00000188376.9:ENST00000551917.5:ENST00000546766.5:ENST00000228318.8:ENST00000552981.6:ENST00000551123.5:ENST00000549338.5:ENST00000548847.1:ENST00000548480.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	33	2	2.4458	3.30383	4.16186	0.0425977	0.026079	0.148082	0.133676
chr18	57606942	57607037	6980554	0	-	0.326316	(0.32,0.35]	chr18	690669	3	EXON_MRNA	EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NARS1	ENSG00000134440.12	ENST00000256854.10:ENST00000586807.5:ENST00000589001.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	33	2	2.4458	3.30383	4.16186	0.0425977	0.026079	0.148082	0.133676
chr7	140847114	140847214	3662956	0	-	0.35	(0.32,0.35]	chr7	340099	110	INTRON	INTRON	BRAF	ENSG00000157764.14	ENST00000496384.7:ENST00000644969.2:ENST00000646891.1:ENST00000644905.1:ENST00000642228.1:ENST00000288602.11:ENST00000646730.1:ENST00000497784.2:ENST00000642272.1:ENST00000642808.1:ENST00000643790.1:ENST00000469930.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	33	2	2.4458	3.30383	4.16186	0.0425977	0.026079	0.148082	0.133676
chr8	102359370	102359470	4012218	0	-	0.54	(0.515,0.57]	chr8	367218	119	INTRON	INTRON	UBR5	ENSG00000104517.13	ENST00000520539.6:ENST00000220959.8:ENST00000521922.5	protein_coding	protein_coding	protein_coding	protein_coding	6	55	2	1.44339	3.30376	5.16413	0.0352285	8.14815e-4	0.150284	0.0263656
chr10	70674055	70674155	4447338	0	+	0.59	(0.57,1]	chr10	410361	1	SS3_PROX	SS3_PROX:INTRON	ADAMTS14	ENSG00000138316.11	ENST00000373207.2:ENST00000373208.5	protein_coding	protein_coding	protein_coding	protein_coding	4	33	2	1.64415	3.3037549999999998	4.96336	0.0342575	2.05554e-4	0.135558	0.0124557
chr1	120611662	120611762	535857	0	-	0.43	(0.408,0.44]	chr1	63034	321	INTRON	INTRON	PDE4DIPP2	ENSG00000275131.3	ENST00000612480.2	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	2	36	2	2.00768	3.3037349999999996	4.59979	0.035843	0.0109537	0.152216	0.0873034
chr22	17982107	17982207	7550246	0	-	0.42	(0.408,0.44]	chr22	771756	749	INTRON	INTRON	MICAL3	ENSG00000243156.9	ENST00000441493.7:ENST00000672019.1:ENST00000495076.5:ENST00000424046.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	36	2	2.00768	3.3037349999999996	4.59979	0.035843	0.0109537	0.152216	0.0873034
chr7	2236160	2236257	3466976	0	-	0.474227	(0.44,0.476]	chr7	324149	2	INTRON	INTRON	MRM2	ENSG00000122687.19	ENST00000242257.14:ENST00000467199.5:ENST00000440306.3:ENST00000486040.1:ENST00000407040.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	39	2	1.9039	3.303725	4.70355	0.0501498	0.00383786	0.156383	0.0562562
chr3	185797567	185797667	1886074	0	-	0.5	(0.476,0.515]	chr3	188573	989	INTRON	INTRON	IGF2BP2	ENSG00000073792.16	ENST00000382199.7:ENST00000346192.7:ENST00000457616.6:ENST00000421047.3:ENST00000461957.5:ENST00000493302.5:ENST00000466476.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	36	2	1.99341	3.303715	4.61402	0.037389	0.00947755	0.155878	0.0817766
chr5	10710071	10710171	2567815	0	-	0.51	(0.476,0.515]	chr5	246124	261	INTRON	INTRON	DAP	ENSG00000112977.16	ENST00000230895.11:ENST00000432074.2:ENST00000514882.5:ENST00000508253.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	36	2	1.99341	3.303715	4.61402	0.037389	0.00947755	0.155878	0.0817766
chr9	37189551	37189651	4118352	0	+	0.49	(0.476,0.515]	chr9	375389	26	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000461038.5:ENST00000488607.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	36	2	1.99341	3.303715	4.61402	0.037389	0.00947755	0.155878	0.0817766
chr19	45788873	45788969	7193304	0	-	0.458333	(0.44,0.476]	chr19	728503	13	INTRON	INTRON	DMWD	ENSG00000185800.12	ENST00000270223.7:ENST00000377735.7:ENST00000601370.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	49	2	1.90381	3.30368	4.70355	0.0260626	0.00383786	0.122153	0.0562562
chr5	62471002	62471099	2363593	0	+	0.474227	(0.44,0.476]	chr5	227890	3	INTRON	INTRON	IPO11	ENSG00000086200.17	ENST00000424533.5:ENST00000325324.11:ENST00000409296.7:ENST00000507640.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	49	2	1.90381	3.30368	4.70355	0.0260626	0.00383786	0.122153	0.0562562
chr2	68175376	68175472	801379	0	+	0.479167	(0.476,0.515]	chr2	89583	7	UTR3	UTR3:EXON_MRNA	PNO1	ENSG00000115946.8	ENST00000263657.7	protein_coding	protein_coding	protein_coding	protein_coding	2	39	2	1.99197	3.30358	4.61519	0.039572	0.00528365	0.143072	0.0656295
chr5	72975468	72975568	2388357	0	+	0.5	(0.476,0.515]	chr5	230520	65	INTRON	INTRON	FCHO2	ENSG00000157107.14	ENST00000430046.7:ENST00000507345.6:ENST00000512348.5:ENST00000287761.7	protein_coding	protein_coding	protein_coding	protein_coding	2	39	2	1.99197	3.30358	4.61519	0.039572	0.00528365	0.143072	0.0656295
chr5	138004192	138004292	2730507	0	-	0.51	(0.476,0.515]	chr5	256973	155	INTRON	INTRON	FAM13B	ENSG00000031003.11	ENST00000689681.1:ENST00000033079.7:ENST00000425075.6:ENST00000420893.6	protein_coding	protein_coding	protein_coding	protein_coding	2	39	2	1.99197	3.30358	4.61519	0.039572	0.00528365	0.143072	0.0656295
chr1	23766736	23766836	401180	0	-	0.51	(0.476,0.515]	chr1	48105	52	INTRON	INTRON	ELOA-AS1	ENSG00000236810.7	ENST00000655402.1:ENST00000427796.6:ENST00000686609.1:ENST00000664563.2:ENST00000652963.1	lncRNA	lncRNA	lncRNA	lncRNA	2	36	2	1.8388	3.303535	4.76827	0.0564473	0.00600704	0.184423	0.0674604
chr1	55107530	55107630	464773	0	-	0.48	(0.476,0.515]	chr1	56078	1	SS3_PROX	SS3_PROX:INTRON	USP24	ENSG00000162402.14	ENST00000294383.7	protein_coding	protein_coding	protein_coding	protein_coding	2	36	2	1.8388	3.303535	4.76827	0.0564473	0.00600704	0.184423	0.0674604
chr2	27587802	27587902	717981	0	+	0.51	(0.476,0.515]	chr2	83352	37	INTRON	INTRON	ZNF512	ENSG00000243943.10	ENST00000413371.6:ENST00000416005.6:ENST00000556601.5:ENST00000379717.5:ENST00000355467.6:ENST00000494548.1:ENST00000461705.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	36	2	1.8388	3.303535	4.76827	0.0564473	0.00600704	0.184423	0.0674604
chr22	49519380	49519480	7601273	0	-	0.49	(0.476,0.515]	chr22	778566	778	INTRON	INTRON	MIR3667HG	ENSG00000188511.13	ENST00000414287.5:ENST00000416411.1	lncRNA	lncRNA	lncRNA	lncRNA	2	36	2	1.8388	3.303535	4.76827	0.0564473	0.00600704	0.184423	0.0674604
chr3	25657742	25657841	1642098	0	-	0.484848	(0.476,0.515]	chr3	168598	119	INTRON	INTRON	TOP2B	ENSG00000077097.16	ENST00000264331.9:ENST00000435706.6:ENST00000424225.1	protein_coding	protein_coding	protein_coding	protein_coding	2	36	2	1.8388	3.303535	4.76827	0.0564473	0.00600704	0.184423	0.0674604
chr4	2624162	2624262	1913394	0	+	0.5	(0.476,0.515]	chr4	191983	275	INTRON	INTRON	RNF4:FAM193A	ENSG00000063978.16:ENSG00000125386.16	ENST00000508235.1:ENST00000637812.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	36	2	1.8388	3.303535	4.76827	0.0564473	0.00600704	0.184423	0.0674604
chr6	79068236	79068335	3141980	0	-	0.515152	(0.476,0.515]	chr6	292888	2	INTRON	INTRON	PHIP	ENSG00000146247.14	ENST00000275034.5	protein_coding	protein_coding	protein_coding	protein_coding	2	36	2	1.8388	3.303535	4.76827	0.0564473	0.00600704	0.184423	0.0674604
chr7	67303958	67304053	3329098	0	+	0.505263	(0.476,0.515]	chr7	309482	7	INTRON	INTRON	STAG3L4	ENSG00000106610.16	ENST00000416602.6:ENST00000689067.1:ENST00000691248.1:ENST00000689978.1:ENST00000687534.1:ENST00000647855.1:ENST00000472361.5:ENST00000689458.1	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript	2	36	2	1.8388	3.303535	4.76827	0.0564473	0.00600704	0.184423	0.0674604
chr8	94844879	94844979	3800343	0	+	0.49	(0.476,0.515]	chr8	352383	20	INTRON	INTRON	INTS8	ENSG00000164941.14	ENST00000523731.6:ENST00000524333.5:ENST00000523321.5:ENST00000343161.8:ENST00000523206.5:ENST00000520526.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	36	2	1.8388	3.303535	4.76827	0.0564473	0.00600704	0.184423	0.0674604
chr5	71640406	71640505	2385377	0	+	0.424242	(0.408,0.44]	chr5	230172	7	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MCCC2	ENSG00000131844.17	ENST00000505787.8:ENST00000682499.1:ENST00000682214.1:ENST00000682045.1:ENST00000683789.1:ENST00000681968.1:ENST00000683665.1:ENST00000512218.6:ENST00000682541.1:ENST00000682727.1:ENST00000683098.1:ENST00000683258.1:ENST00000684254.1:ENST00000683882.1:ENST00000684024.1:ENST00000683403.1:ENST00000682687.1:ENST00000682876.1:ENST00000629193.3:ENST00000683429.1:ENST00000340941.11:ENST00000509358.7:ENST00000505435.4:ENST00000683339.1:ENST00000683847.1:ENST00000684530.1:ENST00000684310.1:ENST00000509539.3:ENST00000681991.1:ENST00000682667.1:ENST00000684686.1:ENST00000684474.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	36	2	1.85305	3.303515	4.75398	0.0543543	0.00703931	0.182243	0.0718189
chr2	171085043	171085143	1263338	0	-	0.41	(0.408,0.44]	chr2	133909	18	INTRON	INTRON	TLK1	ENSG00000198586.14	ENST00000431350.7:ENST00000360843.7:ENST00000359766.7:ENST00000521943.5:ENST00000409443.6:ENST00000413010.5:ENST00000486857.5:ENST00000470340.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	37	2	2.27464	3.30351	4.33238	0.0218901	0.0158016	0.11491	0.109464
chr2	197423307	197423407	1306906	0	-	0.42	(0.408,0.44]	chr2	136742	1	SS5_PROX	SS5_PROX:INTRON	SF3B1	ENSG00000115524.17	ENST00000652026.1:ENST00000652738.1:ENST00000335508.11:ENST00000470268.2:ENST00000409915.8:ENST00000414963.2:ENST00000487698.5:ENST00000414174.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	37	2	2.27464	3.30351	4.33238	0.0218901	0.0158016	0.11491	0.109464
chr6	24413954	24414050	2835495	0	+	0.291667	(0.28,0.32]	chr6	265759	12	INTRON	INTRON	MRS2	ENSG00000124532.15	ENST00000274747.11:ENST00000443868.6:ENST00000378386.8:ENST00000378353.5:ENST00000483634.1:ENST00000446191.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	76	2	2.82769	3.30348	3.77927	0.0169391	3.56863e-4	0.103888	0.0169148
chr8	144460497	144460596	4086401	0	-	0.565657	(0.515,0.57]	chr8	372102	27	INTRON	INTRON	CYHR1	ENSG00000187954.13	ENST00000438911.6:ENST00000530374.6:ENST00000526887.5:ENST00000528558.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	69	2	2.84387	3.3034049999999997	3.76294	0.0018149	2.08636e-4	0.0384415	0.0125926
chr16	16554198	16554298	6311404	0	+	0.21	[0,0.28]	chr16	604098	542	INTRON	INTRON	ENSG00000260126	ENSG00000260126.2	ENST00000567465.2	lncRNA	lncRNA	lncRNA	lncRNA	3	117	2	2.9666	3.303205	3.63981	0.00252653	8.51767e-4	0.0446985	0.0264928
chr1	17410351	17410451	384683	0	-	0.57	(0.515,0.57]	chr1	45442	3	SS3_PROX	SS3_PROX:INTRON	RCC2	ENSG00000179051.14	ENST00000375436.9:ENST00000375433.3	protein_coding	protein_coding	protein_coding	protein_coding	1	26	2	2.43589	3.3031300000000003	4.17037	0.0370871	0.0139194	0.139194	0.10247
chr1	43726764	43726864	86277	0	+	0.53	(0.515,0.57]	chr1	11645	169	INTRON	INTRON	ST3GAL3	ENSG00000126091.21	ENST00000646096.1:ENST00000532911.6:ENST00000643597.1:ENST00000643886.1:ENST00000372372.7:ENST00000545417.5:ENST00000330208.6:ENST00000335430.10:ENST00000361400.9:ENST00000347631.8:ENST00000642331.1:ENST00000647237.1:ENST00000643252.1:ENST00000372374.7:ENST00000361392.9:ENST00000646109.1:ENST00000533997.6:ENST00000353126.8:ENST00000645640.1:ENST00000642934.1:ENST00000643283.1:ENST00000351035.8:ENST00000642949.1:ENST00000489897.6:ENST00000646971.1:ENST00000645142.1:ENST00000645705.1:ENST00000530154.5:ENST00000646027.1:ENST00000646069.1:ENST00000642504.1:ENST00000647148.1:ENST00000262915.8:ENST00000479383.6:ENST00000647482.1:ENST00000646776.1:ENST00000645394.1:ENST00000647128.1:ENST00000484868.2:ENST00000461066.6:ENST00000361746.9:ENST00000645034.1:ENST00000645165.1:ENST00000647134.1:ENST00000644195.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	26	2	2.43589	3.3031300000000003	4.17037	0.0370871	0.0139194	0.139194	0.10247
chr10	77826046	77826143	4653769	0	-	0.515464	(0.515,0.57]	chr10	428694	12	INTRON	INTRON	DLG5	ENSG00000151208.17	ENST00000372391.7:ENST00000475613.6:ENST00000424842.5:ENST00000468332.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	26	2	2.43589	3.3031300000000003	4.17037	0.0370871	0.0139194	0.139194	0.10247
chr2	96728323	96728422	1181483	0	-	0.535354	(0.515,0.57]	chr2	126570	148	INTRON	INTRON	LMAN2L	ENSG00000114988.12	ENST00000264963.9:ENST00000434524.5:ENST00000377079.8:ENST00000446780.5:ENST00000434865.5:ENST00000440610.5:ENST00000449221.5:ENST00000480869.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	26	2	2.43589	3.3031300000000003	4.17037	0.0370871	0.0139194	0.139194	0.10247
chr20	41579038	41579138	7344151	0	-	0.52	(0.515,0.57]	chr20	748566	145	INTRON	INTRON	CHD6	ENSG00000124177.16	ENST00000373233.8:ENST00000373222.3:ENST00000482596.1:ENST00000440647.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	26	2	2.43589	3.3031300000000003	4.17037	0.0370871	0.0139194	0.139194	0.10247
chr9	33403716	33403786	4110152	0	+	0.557143	(0.515,0.57]	chr9	374665	3	INTRON	INTRON	ENSG00000286322	ENSG00000286322.2	ENST00000661480.1:ENST00000690698.1:ENST00000653159.1:ENST00000664119.1:ENST00000693224.1:ENST00000685337.1:ENST00000688867.1:ENST00000657938.1:ENST00000654973.1:ENST00000664487.1:ENST00000450864.1	lncRNA	lncRNA	lncRNA	lncRNA	1	26	2	2.43589	3.3031300000000003	4.17037	0.0370871	0.0139194	0.139194	0.10247
chr10	49822479	49822578	4614990	0	-	0.444444	(0.44,0.476]	chr10	425124	18	INTRON	INTRON	PARG	ENSG00000227345.9	ENST00000402038.7:ENST00000616448.2:ENST00000614063.4:ENST00000610922.1:ENST00000492350.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	29	2	2.38219	3.3030600000000003	4.22393	0.045456	0.0162322	0.149888	0.109464
chr15	89274604	89274704	6096051	0	+	0.47	(0.44,0.476]	chr15	580140	3	SS5_PROX	SS5_PROX:INTRON	FANCI	ENSG00000140525.20	ENST00000674831.1:ENST00000300027.12:ENST00000310775.12:ENST00000696717.1:ENST00000676003.1:ENST00000696718.1:ENST00000447611.6:ENST00000696719.1:ENST00000565522.5:ENST00000561894.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	29	2	2.38219	3.3030600000000003	4.22393	0.045456	0.0162322	0.149888	0.109464
chr18	12410122	12410217	6875164	0	+	0.463158	(0.44,0.476]	chr18	681132	18	INTRON	INTRON	PRELID3A	ENSG00000141391.14	ENST00000336990.8:ENST00000590956.5:ENST00000440960.6:ENST00000588729.5:ENST00000589565.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	29	2	2.38219	3.3030600000000003	4.22393	0.045456	0.0162322	0.149888	0.109464
chr19	11064595	11064692	7016659	0	+	0.474227	(0.44,0.476]	chr19	697403	23	INTRON	INTRON	SMARCA4	ENSG00000127616.20	ENST00000645236.1:ENST00000586985.2	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	2.38219	3.3030600000000003	4.22393	0.045456	0.0162322	0.149888	0.109464
chr19	38377152	38377251	7065383	0	+	0.454545	(0.44,0.476]	chr19	705368	3	INTRON	INTRON	PSMD8	ENSG00000099341.12	ENST00000620216.4:ENST00000215071.9:ENST00000585598.1:ENST00000602911.5:ENST00000591216.1:ENST00000592561.5:ENST00000592001.5:ENST00000592035.5:ENST00000591250.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	29	2	2.38219	3.3030600000000003	4.22393	0.045456	0.0162322	0.149888	0.109464
chr22	21830436	21830536	7561014	0	-	0.45	(0.44,0.476]	chr22	773388	222	INTRON	INTRON	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	2.38219	3.3030600000000003	4.22393	0.045456	0.0162322	0.149888	0.109464
chr6	42081773	42081873	2864997	0	+	0.46	(0.44,0.476]	chr6	271004	21	UTR3	UTR3:EXON_MRNA:INTRON	TAF8	ENSG00000137413.17	ENST00000372982.8:ENST00000456846.6:ENST00000372977.8:ENST00000688562.1:ENST00000687266.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	29	2	2.38219	3.3030600000000003	4.22393	0.045456	0.0162322	0.149888	0.109464
chr7	96146896	96146996	3574487	0	-	0.46	(0.44,0.476]	chr7	332993	2	SS3_PROX	SS3_PROX:INTRON	SLC25A13	ENSG00000004864.14	ENST00000265631.10:ENST00000416240.6:ENST00000490072.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	29	2	2.38219	3.3030600000000003	4.22393	0.045456	0.0162322	0.149888	0.109464
chr11	3866402	3866502	4723568	0	+	0.48	(0.476,0.515]	chr11	437119	96	INTRON	INTRON	STIM1	ENSG00000167323.12	ENST00000525403.5:ENST00000526596.2:ENST00000300737.8:ENST00000616714.4:ENST00000527651.5	protein_coding	protein_coding	protein_coding	protein_coding	5	111	2	2.06011	3.303045	4.54598	0.00869033	2.87873e-6	0.0788605	0.00108909
chr3	48928412	48928512	1421550	0	+	0.34	(0.32,0.35]	chr3	149480	2	INTRON	INTRON	ARIH2	ENSG00000177479.20	ENST00000478224.5:ENST00000430423.5:ENST00000452882.5:ENST00000498314.5:ENST00000474618.5:ENST00000449376.5:ENST00000490095.5:ENST00000356401.9:ENST00000495761.5:ENST00000483333.5:ENST00000482427.5:ENST00000488963.5:ENST00000420814.5:ENST00000486316.5:ENST00000474936.6:ENST00000484999.5:ENST00000470296.5:ENST00000463204.5:ENST00000452385.5:ENST00000495507.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	61	2	1.42176	3.302955	5.18415	0.0511006	0.00333629	0.176696	0.0512081
chr1	16348461	16348561	382580	0	-	0.48	(0.476,0.515]	chr1	44888	327	INTRON	INTRON	FBXO42	ENSG00000037637.11	ENST00000375592.8	protein_coding	protein_coding	protein_coding	protein_coding	5	56	2	1.57103	3.3028449999999996	5.03466	0.0307896	0.00252065	0.143385	0.0446195
chr22	40850225	40850322	7590655	0	-	0.371134	(0.35,0.378]	chr22	777274	15	INTRON	INTRON	ST13	ENSG00000100380.15	ENST00000216218.8:ENST00000455824.1:ENST00000411695.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	43	2	2.63527	3.3027949999999997	3.97032	0.0578667	0.00443588	0.167723	0.061054
chr22	20056165	20056241	7478103	0	+	0.631579	(0.57,1]	chr22	762666	3	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	TANGO2	ENSG00000183597.16	ENST00000401886.5:ENST00000471707.5:ENST00000420290.6:ENST00000432883.5:ENST00000434570.6:ENST00000447208.6:ENST00000456048.5:ENST00000411907.5:ENST00000398042.6:ENST00000399807.7:ENST00000450664.5:ENST00000450019.5:ENST00000327374.9:ENST00000430807.5:ENST00000401833.5:ENST00000434168.5:ENST00000444651.5:ENST00000462579.5:ENST00000485715.2:ENST00000484373.5:ENST00000490583.5:ENST00000490121.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	32	2	2.43624	3.302525	4.16881	0.00574776	0.00279586	0.0681402	0.0469265
chr3	49780975	49781075	1694828	0	-	0.35	(0.32,0.35]	chr3	173818	322	INTRON	INTRON	IP6K1	ENSG00000176095.12	ENST00000321599.9:ENST00000395238.5:ENST00000613416.4:ENST00000468463.5:ENST00000460540.1:ENST00000498149.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	32	2	2.23182	3.302255	4.37269	0.068598	0.0154102	0.184298	0.108569
chr3	52688778	52688851	1429214	0	+	0.328767	(0.32,0.35]	chr3	150988	2	SS3_PROX	SS3_PROX:INTRON	GNL3	ENSG00000163938.17	ENST00000479230.5:ENST00000468146.5:ENST00000394799.6:ENST00000418458.6:ENST00000492349.5:ENST00000496254.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	32	2	2.23182	3.302255	4.37269	0.068598	0.0154102	0.184298	0.108569
chr5	176928544	176928644	2776143	0	-	0.33	(0.32,0.35]	chr5	261526	89	INTRON	INTRON	UIMC1	ENSG00000087206.17	ENST00000377227.8:ENST00000511320.6:ENST00000506128.5:ENST00000512031.5:ENST00000510698.2:ENST00000503273.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	32	2	2.23182	3.302255	4.37269	0.068598	0.0154102	0.184298	0.108569
chrX	77955830	77955930	7685487	0	+	0.33	(0.32,0.35]	chrX	786845	275	INTRON	INTRON	ENSG00000248503:ATP7A:PGK1	ENSG00000248503.3:ENSG00000165240.22:ENSG00000102144.15	ENST00000686088.1:ENST00000693051.1:ENST00000341514.11:ENST00000688746.1:ENST00000688338.1:ENST00000685264.1:ENST00000686515.1:ENST00000687086.1:ENST00000689530.1:ENST00000686999.1:ENST00000644362.1:ENST00000343533.10:ENST00000686543.1:ENST00000686033.1:ENST00000692908.1:ENST00000686688.1:ENST00000686480.1:ENST00000689649.1:ENST00000686416.1:ENST00000682742.2:ENST00000685434.1:ENST00000693387.1:ENST00000688249.1:ENST00000689891.1:ENST00000691152.1:ENST00000688889.1:ENST00000687984.1:ENST00000685208.1:ENST00000687599.1:ENST00000685885.1:ENST00000687082.1:ENST00000693167.1:ENST00000692729.1:ENST00000645454.1:ENST00000686896.1:ENST00000689731.1:ENST00000684798.1:ENST00000686560.1:ENST00000686464.1:ENST00000686050.1:ENST00000602791.2:ENST00000686133.1:ENST00000645094.1:ENST00000689541.1:ENST00000642651.1:ENST00000693398.1:ENST00000688165.1:ENST00000692110.1:ENST00000687325.1:ENST00000689767.1:ENST00000687628.1:ENST00000691456.1	protein_coding	protein_coding	protein_coding:transcribed_processed_pseudogene	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	32	2	2.23182	3.302255	4.37269	0.068598	0.0154102	0.184298	0.108569
chr2	20298377	20298477	1076250	0	-	0.33	(0.32,0.35]	chr2	114994	3	INTRON	INTRON	PUM2	ENSG00000055917.16	ENST00000338086.9:ENST00000361078.7:ENST00000440577.5	protein_coding	protein_coding	protein_coding	protein_coding	3	51	2	2.14793	3.30211	4.45629	0.0246089	0.0110079	0.12011	0.0927187
chr9	130737354	130737454	4214098	0	+	0.48	(0.476,0.515]	chr9	386427	225	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000393293.4	protein_coding	protein_coding	protein_coding	protein_coding	4	106	2	3.27481	3.302065	3.32932	2.99781e-4	1.60666e-4	0.0160591	0.0109124
chr1	1712063	1712163	361080	0	-	0.55	(0.515,0.57]	chr1	42071	4	SS5_PROX	SS5_PROX:INTRON	CDK11A:ENSG00000268575	ENSG00000008128.23:ENSG00000268575.1	ENST00000404249.8:ENST00000356200.7:ENST00000598846.1:ENST00000357760.6:ENST00000358779.9:ENST00000378633.5:ENST00000460465.5:ENST00000509982.5:ENST00000378638.6:ENST00000356937.7	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA	3	40	2	2.00468	3.3019100000000003	4.59914	0.0166344	0.00616166	0.110511	0.0676501
chr7	119729737	119729837	3628635	0	-	0.21	[0,0.28]	chr7	337319	244	INTRON	INTRON	LINC02476	ENSG00000225546.6	ENST00000660268.1:ENST00000431071.5	lncRNA	lncRNA	lncRNA	lncRNA	11	388	2	2.82098	3.301875	3.78277	2.09786e-4	1.68245e-6	0.013152	7.83961e-4
chr1	45599295	45599393	93355	0	+	0.5	(0.476,0.515]	chr1	12579	42	INTRON	INTRON	NASP	ENSG00000132780.17	ENST00000437901.6:ENST00000537798.5:ENST00000437362.6:ENST00000350030.8:ENST00000464190.6:ENST00000527359.5:ENST00000528084.5:ENST00000453748.5:ENST00000525515.5:ENST00000527470.5:ENST00000529333.5:ENST00000531532.5:ENST00000530840.5:ENST00000528238.5:ENST00000534101.1:ENST00000470768.5:ENST00000372052.8:ENST00000351223.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	30	2	2.63168	3.301845	3.97201	0.030904	0.0237106	0.143385	0.118716
chr4	32004018	32004118	1941488	0	+	0.49	(0.476,0.515]	chr4	194727	58	INTRON	INTRON	LINC02506	ENSG00000251129.3	ENST00000662669.1:ENST00000665582.2:ENST00000667252.2:ENST00000660373.2:ENST00000684849.1:ENST00000513211.2:ENST00000659613.1:ENST00000657576.1:ENST00000686730.1:ENST00000685407.1:ENST00000685455.1:ENST00000655951.1	lncRNA	lncRNA	lncRNA	lncRNA	1	30	2	2.63168	3.301845	3.97201	0.030904	0.0237106	0.143385	0.118716
chr6	122515872	122515972	2948110	0	+	0.5	(0.476,0.515]	chr6	277524	225	INTRON	INTRON	PKIB	ENSG00000135549.16	ENST00000615438.4:ENST00000392491.6:ENST00000608895.5:ENST00000618977.4:ENST00000583007.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	30	2	2.63168	3.301845	3.97201	0.030904	0.0237106	0.143385	0.118716
chr2	25875073	25875172	1085508	0	-	0.272727	[0,0.28]	chr2	115962	292	INTRON	INTRON	ASXL2	ENSG00000143970.18	ENST00000435504.9:ENST00000336112.9:ENST00000682588.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	46	2	2.05756	3.30183	4.5461	0.0365918	0.0352544	0.150301	0.138959
chr5	55337033	55337132	2355382	0	+	0.272727	[0,0.28]	chr5	227152	78	INTRON	INTRON	MTREX	ENSG00000039123.16	ENST00000230640.10:ENST00000506750.5:ENST00000504997.1:ENST00000505565.5:ENST00000502953.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	46	2	2.05756	3.30183	4.5461	0.0365918	0.0352544	0.150301	0.138959
chr4	70935626	70935726	1970838	0	+	0.4	(0.378,0.408]	chr4	197571	327	INTRON	INTRON	MOB1B	ENSG00000173542.9	ENST00000502869.5:ENST00000509041.5:ENST00000309395.7:ENST00000396051.2:ENST00000511449.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	148	2	2.38245	3.30182	4.22119	3.81862e-4	4.64213e-5	0.017687	0.00590859
chr22	47704288	47704388	7540089	0	+	0.37	(0.35,0.378]	chr22	770710	3	SS3_PROX	SS3_PROX:INTRON	ENSG00000224271	ENSG00000224271.7	ENST00000664761.1:ENST00000651071.1:ENST00000650683.1:ENST00000651536.1:ENST00000652499.1:ENST00000652656.1:ENST00000652072.1:ENST00000651445.1:ENST00000423737.5:ENST00000650834.1:ENST00000650660.1:ENST00000651056.1:ENST00000652611.1:ENST00000652399.1:ENST00000652123.1:ENST00000651311.1:ENST00000651458.1:ENST00000652505.1:ENST00000652702.2:ENST00000652334.1:ENST00000652030.2:ENST00000651403.1:ENST00000652228.1:ENST00000651124.1:ENST00000650972.1:ENST00000651985.1:ENST00000651754.1:ENST00000651637.1:ENST00000650924.1:ENST00000651003.1:ENST00000652168.1:ENST00000651948.2:ENST00000651293.1:ENST00000651939.1:ENST00000650787.1:ENST00000651517.1:ENST00000651662.1:ENST00000652690.1:ENST00000651638.1:ENST00000670853.1:ENST00000652750.1:ENST00000652080.1:ENST00000651294.1:ENST00000652164.1:ENST00000651538.1:ENST00000650775.1:ENST00000651983.1:ENST00000651033.1:ENST00000651584.1:ENST00000650884.1:ENST00000651270.1	lncRNA	lncRNA	lncRNA	lncRNA	2	42	2	1.93432	3.301805	4.66929	0.0481438	0.00541617	0.153019	0.066545000000000007
chr10	133407646	133407746	4540355	0	+	0.54	(0.515,0.57]	chr10	419095	45	INTRON	INTRON	MTG1	ENSG00000148824.19	ENST00000477902.6:ENST00000317502.11:ENST00000432508.3:ENST00000460848.5:ENST00000473735.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	33	2	2.1885	3.3017399999999997	4.41498	0.0202537	0.0106866	0.121364	0.0861859
chr3	105819288	105819388	1760615	0	-	0.52	(0.515,0.57]	chr3	178557	424	INTRON	INTRON	CBLB	ENSG00000114423.23	ENST00000645759.1:ENST00000394030.8:ENST00000646499.1:ENST00000645425.1:ENST00000646825.1:ENST00000643322.1:ENST00000403724.5:ENST00000405772.5:ENST00000447441.6:ENST00000643403.1:ENST00000438603.6:ENST00000443752.2:ENST00000643192.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	33	2	2.1885	3.3017399999999997	4.41498	0.0202537	0.0106866	0.121364	0.0861859
chr3	138821419	138821518	1831367	0	-	0.383838	(0.378,0.408]	chr3	184062	245	INTRON	INTRON	PIK3CB	ENSG00000051382.9	ENST00000674063.1:ENST00000477593.5:ENST00000462898.5:ENST00000483968.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	99	2	2.66822	3.301725	3.93523	0.00112898	1.93873e-4	0.0308465	0.0127226
chr17	16002156	16002248	6560560	0	+	0.423913	(0.408,0.44]	chr17	637675	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TTC19	ENSG00000011295.16	ENST00000466729.5:ENST00000475723.5:ENST00000261647.10:ENST00000497842.6:ENST00000470399.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	41	2	2.16746	3.3016300000000003	4.4358	0.024436	0.00893097	0.12011	0.0849778
chr17	72947227	72947327	6833494	0	-	0.56	(0.515,0.57]	chr17	675179	3	SS5_PROX	SS5_PROX:INTRON	SLC39A11	ENSG00000133195.12	ENST00000255559.8:ENST00000542342.6:ENST00000582769.5:ENST00000579491.1:ENST00000584129.1:ENST00000579732.5:ENST00000580557.5:ENST00000583146.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	42	2	1.75372	3.30154	4.84936	0.0386904	0.00146032	0.14279	0.0349875
chr3	23851081	23851181	1388181	0	+	0.36	(0.35,0.378]	chr3	145385	392	INTRON	INTRON	UBE2E1	ENSG00000170142.12	ENST00000306627.8:ENST00000346855.7:ENST00000495141.5:ENST00000442670.5:ENST00000424381.5:ENST00000467766.5:ENST00000475680.5:ENST00000452012.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	65	2	2.94111	3.30131	3.66151	0.0104563	4.717e-4	0.0855102	0.0196294
chr10	32301891	32301990	4591191	0	-	0.282828	(0.28,0.32]	chr10	423373	78	INTRON	INTRON	EPC1	ENSG00000120616.16	ENST00000375110.6:ENST00000319778.11:ENST00000667706.1:ENST00000263062.8:ENST00000479380.2:ENST00000495790.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	31	2	2.46018	3.3011600000000003	4.14214	0.0579756	0.0375904	0.167723	0.156054
chr15	41044403	41044503	6152493	0	-	0.3	(0.28,0.32]	chr15	585298	1	SS5_PROX	SS5_PROX:INTRON	INO80	ENSG00000128908.18	ENST00000648947.1:ENST00000401393.7:ENST00000558357.6:ENST00000559995.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	31	2	2.46018	3.3011600000000003	4.14214	0.0579756	0.0375904	0.167723	0.156054
chr16	70236339	70236438	6509922	0	-	0.292929	(0.28,0.32]	chr16	630471	5	INTRON	INTRON	SMG1P7	ENSG00000261556.10	ENST00000565246.7:ENST00000568855.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	1	31	2	2.46018	3.3011600000000003	4.14214	0.0579756	0.0375904	0.167723	0.156054
chr4	70941022	70941122	1970892	0	+	0.31	(0.28,0.32]	chr4	197571	381	INTRON	INTRON	MOB1B	ENSG00000173542.9	ENST00000502869.5:ENST00000509041.5:ENST00000309395.7:ENST00000396051.2:ENST00000511449.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	31	2	2.46018	3.3011600000000003	4.14214	0.0579756	0.0375904	0.167723	0.156054
chr5	112977880	112977978	2453389	0	+	0.306122	(0.28,0.32]	chr5	235061	5	INTRON	INTRON	DCP2	ENSG00000172795.17	ENST00000515408.5:ENST00000513585.6:ENST00000502635.2:ENST00000510046.1:ENST00000389063.3:ENST00000674880.1:ENST00000504961.1:ENST00000512751.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	31	2	2.46018	3.3011600000000003	4.14214	0.0579756	0.0375904	0.167723	0.156054
chr6	37974693	37974793	2858583	0	+	0.31	(0.28,0.32]	chr6	270231	443	INTRON	INTRON	ZFAND3	ENSG00000156639.12	ENST00000287218.9:ENST00000373391.6:ENST00000474522.5:ENST00000373389.5	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	2.46018	3.3011600000000003	4.14214	0.0579756	0.0375904	0.167723	0.156054
chr7	7231209	7231308	3275080	0	+	0.313131	(0.28,0.32]	chr7	304579	208	INTRON	INTRON	C1GALT1	ENSG00000106392.11	ENST00000429911.5:ENST00000436587.7:ENST00000476068.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	31	2	2.46018	3.3011600000000003	4.14214	0.0579756	0.0375904	0.167723	0.156054
chr8	2726147	2726246	3885440	0	-	0.30303	(0.28,0.32]	chr8	357457	42	INTRON	INTRON	ENSG00000254319	ENSG00000254319.6	ENST00000654884.1:ENST00000659324.1:ENST00000655416.1:ENST00000666066.1:ENST00000519393.6:ENST00000523971.5:ENST00000517984.6:ENST00000517357.5:ENST00000658181.1:ENST00000665048.1:ENST00000671533.1:ENST00000520842.6:ENST00000654513.1:ENST00000520570.2:ENST00000664965.1:ENST00000655522.1	lncRNA	lncRNA	lncRNA	lncRNA	1	31	2	2.46018	3.3011600000000003	4.14214	0.0579756	0.0375904	0.167723	0.156054
chr9	100347906	100348003	4309124	0	-	0.309278	(0.28,0.32]	chr9	395891	1	INTRON	INTRON	TEX10	ENSG00000136891.14	ENST00000535814.5:ENST00000374902.9	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	2.46018	3.3011600000000003	4.14214	0.0579756	0.0375904	0.167723	0.156054
chr9	137748657	137748757	4224797	0	+	0.32	(0.28,0.32]	chr9	388259	8	INTRON	INTRON	EHMT1	ENSG00000181090.21	ENST00000462484.5:ENST00000371394.6:ENST00000460843.6:ENST00000629335.2:ENST00000636027.1:ENST00000637161.1:ENST00000637261.1:ENST00000637977.1:ENST00000626066.2:ENST00000638071.1:ENST00000495657.5:ENST00000640639.1:ENST00000629808.2:ENST00000462942.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	31	2	2.46018	3.3011600000000003	4.14214	0.0579756	0.0375904	0.167723	0.156054
chr16	89895237	89895321	6422663	0	+	0.333333	(0.32,0.35]	chr16	616772	1	SS5_PROX	SS5_PROX:INTRON	TCF25	ENSG00000141002.20	ENST00000640279.1:ENST00000263347.11:ENST00000263346.13:ENST00000568412.5:ENST00000562256.5:ENST00000568409.5:ENST00000562184.5:ENST00000563636.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	53	2	1.60297	3.301095	4.99922	0.0647328	0.00223907	0.179192	0.0435144
chr11	34078829	34078928	4767928	0	+	0.414141	(0.408,0.44]	chr11	440978	18	INTRON	INTRON	CAPRIN1	ENSG00000135387.21	ENST00000341394.9:ENST00000528856.5:ENST00000389645.7:ENST00000532820.5:ENST00000530820.5:ENST00000529307.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	42	2	2.26792	3.30096	4.334	0.0179973	0.011982	0.106756	0.0962115
chr2	241323129	241323227	1053681	0	+	0.469388	(0.44,0.476]	chr2	112202	25	INTRON	INTRON	SEPTIN2	ENSG00000168385.18	ENST00000391973.6:ENST00000428282.5:ENST00000492978.5:ENST00000360051.7:ENST00000407017.5:ENST00000445030.5:ENST00000428524.5:ENST00000469434.5:ENST00000616972.4:ENST00000495463.5:ENST00000482304.5:ENST00000475474.5:ENST00000401990.5:ENST00000469175.5:ENST00000407971.5:ENST00000461048.5:ENST00000457335.5:ENST00000436795.5:ENST00000494824.5:ENST00000411484.5:ENST00000462147.5:ENST00000434955.5:ENST00000466211.5:ENST00000391971.7:ENST00000402092.6:ENST00000484740.1:ENST00000473479.5:ENST00000464128.5:ENST00000441533.5:ENST00000467971.5:ENST00000425899.5:ENST00000443492.5:ENST00000437066.5:ENST00000429791.5:ENST00000420786.5:ENST00000475823.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	128	2	2.77169	3.300935	3.83018	8.89744e-4	8.00631e-6	0.0274757	0.00202764
chr8	105330932	105331032	3837364	0	+	0.33	(0.32,0.35]	chr8	354033	108	INTRON	INTRON	ZFPM2	ENSG00000169946.14	ENST00000518180.1:ENST00000407775.7:ENST00000520492.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	93	2	3.28616	3.300745	3.31533	0.00323121	2.51931e-4	0.0507087	0.0141209
chr17	59152489	59152587	6802374	0	-	0.183673	[0,0.28]	chr17	671864	8	INTRON	INTRON	SKA2	ENSG00000182628.13	ENST00000330137.12:ENST00000580541.1:ENST00000578105.1:ENST00000578519.5:ENST00000583927.1:ENST00000581068.5:ENST00000437036.6:ENST00000583380.5:ENST00000583976.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	45	2	1.84147	3.300555	4.75964	0.0610416	0.0232081	0.193277	0.118148
chr2	38592048	38592148	1099669	0	-	0.22	[0,0.28]	chr2	117956	4	SS3_PROX	SS3_PROX:INTRON	HNRNPLL	ENSG00000143889.16	ENST00000449105.8:ENST00000409636.5:ENST00000358367.8:ENST00000608859.5:ENST00000378915.7:ENST00000409328.5:ENST00000410076.5:ENST00000425682.1:ENST00000498516.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	45	2	1.84147	3.300555	4.75964	0.0610416	0.0232081	0.193277	0.118148
chr14	73068857	73068956	5784183	0	+	0.383838	(0.378,0.408]	chr14	547814	34	INTRON	INTRON	RBM25	ENSG00000119707.14	ENST00000527432.5:ENST00000531500.5:ENST00000261973.12:ENST00000532683.5:ENST00000525321.5:ENST00000526754.5:ENST00000525161.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	30	2	2.38873	3.3004949999999997	4.21226	0.0458857	0.0177403	0.149888	0.11319
chr17	68040177	68040238	6669385	0	+	0.393443	(0.378,0.408]	chr17	650745	1	SS3_PROX	SS3_PROX:INTRON	KPNA2	ENSG00000182481.10	ENST00000676857.1:ENST00000676594.1:ENST00000677827.1:ENST00000676622.1:ENST00000678054.1:ENST00000583269.5:ENST00000678388.1:ENST00000677918.1:ENST00000676902.1:ENST00000677419.1:ENST00000679346.1:ENST00000677223.1:ENST00000677695.1:ENST00000679078.1:ENST00000330459.8:ENST00000584026.6:ENST00000537025.6:ENST00000677086.1:ENST00000579754.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	30	2	2.38873	3.3004949999999997	4.21226	0.0458857	0.0177403	0.149888	0.11319
chr6	5261860	5261960	2792672	0	+	0.4	(0.378,0.408]	chr6	263651	2	SS5_PROX	SS5_PROX:INTRON	FARS2	ENSG00000145982.13	ENST00000324331.10:ENST00000602691.1:ENST00000648580.1:ENST00000274680.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	30	2	2.38873	3.3004949999999997	4.21226	0.0458857	0.0177403	0.149888	0.11319
chr1	89597664	89597762	158141	0	+	0.357143	(0.35,0.378]	chr1	17219	48	UTR3	UTR3:EXON_MRNA	LRRC8B	ENSG00000197147.15	ENST00000330947.7:ENST00000640258.1:ENST00000639264.1	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	2.30249	3.30044	4.29839	0.0519726	0.0294717	0.176696	0.128055
chr1	100111875	100111974	515647	0	-	0.373737	(0.35,0.378]	chr1	60466	10	INTRON	INTRON	SASS6	ENSG00000156876.10	ENST00000462159.1:ENST00000287482.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	28	2	2.30249	3.30044	4.29839	0.0519726	0.0294717	0.176696	0.128055
chr11	18296418	18296504	4932059	0	-	0.360465	(0.35,0.378]	chr11	461832	4	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HPS5	ENSG00000110756.18	ENST00000396253.7:ENST00000349215.8:ENST00000438420.6:ENST00000531848.1	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	2.30249	3.30044	4.29839	0.0519726	0.0294717	0.176696	0.128055
chr2	71375425	71375524	807461	0	+	0.363636	(0.35,0.378]	chr2	90200	7	EXON_LNCRNA	EXON_LNCRNA:INTRON	ZNF638:ENSG00000281195	ENSG00000075292.19:ENSG00000281195.1	ENST00000410075.5:ENST00000409544.5:ENST00000264447.9:ENST00000434786.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	1	28	2	2.30249	3.30044	4.29839	0.0519726	0.0294717	0.176696	0.128055
chr2	169841247	169841346	908281	0	+	0.363636	(0.35,0.378]	chr2	100222	128	INTRON	INTRON	UBR3	ENSG00000144357.18	ENST00000272793.11	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	2.30249	3.30044	4.29839	0.0519726	0.0294717	0.176696	0.128055
chr5	145672504	145672604	2745006	0	-	0.37	(0.35,0.378]	chr5	258670	1988	INTRON	INTRON	PRELID2	ENSG00000186314.12	ENST00000510259.5	protein_coding	processed_transcript	protein_coding	processed_transcript	1	28	2	2.30249	3.30044	4.29839	0.0519726	0.0294717	0.176696	0.128055
chr9	120399948	120400046	4332037	0	-	0.357143	(0.35,0.378]	chr9	397939	26	INTRON	INTRON	CDK5RAP2	ENSG00000136861.19	ENST00000349780.9:ENST00000360190.8:ENST00000687279.1:ENST00000687633.1:ENST00000684780.1:ENST00000687311.1:ENST00000479584.2:ENST00000690814.1:ENST00000686842.1:ENST00000691551.1:ENST00000693714.1:ENST00000693386.1:ENST00000688512.1:ENST00000692746.1:ENST00000686376.1:ENST00000692155.1:ENST00000690646.1:ENST00000693433.1:ENST00000688923.1:ENST00000689012.1:ENST00000473282.6:ENST00000480112.5:ENST00000685866.1:ENST00000689688.1:ENST00000474262.5:ENST00000416449.6:ENST00000691504.1:ENST00000480467.5:ENST00000433194.6:ENST00000425647.1:ENST00000360822.8:ENST00000693728.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	28	2	2.30249	3.30044	4.29839	0.0519726	0.0294717	0.176696	0.128055
chr13	36340044	36340144	5574513	0	-	0.38	(0.378,0.408]	chr13	532779	33	INTRON	INTRON	SPART	ENSG00000133104.14	ENST00000438666.7:ENST00000355182.8:ENST00000451493.5:ENST00000650221.1:ENST00000494062.2:ENST00000495510.1:ENST00000494703.1:ENST00000476377.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	44	2	1.65821	3.3003549999999997	4.9425	0.0506302	0.00452675	0.17547	0.0595107
chr5	28876529	28876629	2330515	0	+	0.4	(0.378,0.408]	chr5	225135	660	INTRON	INTRON	LINC02109	ENSG00000259786.7	ENST00000658190.1	lncRNA	lncRNA	lncRNA	lncRNA	3	44	2	1.65821	3.3003549999999997	4.9425	0.0506302	0.00452675	0.17547	0.0595107
chr5	139584979	139585079	2500740	0	+	0.47	(0.44,0.476]	chr5	239026	222	INTRON	INTRON	UBE2D2	ENSG00000131508.16	ENST00000511725.5:ENST00000505007.5:ENST00000398733.8:ENST00000510470.1:ENST00000398734.8:ENST00000505548.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	36	2	2.0776	3.3001500000000004	4.5227	0.0292951	0.0128818	0.141862	0.0926667
chr7	8116333	8116433	3479786	0	-	0.45	(0.44,0.476]	chr7	325660	19	INTRON	INTRON	ICA1	ENSG00000003147.19	ENST00000402384.8:ENST00000406470.6:ENST00000650486.1:ENST00000265577.11:ENST00000396675.7:ENST00000339809.10:ENST00000455539.5:ENST00000401396.5:ENST00000422063.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	36	2	2.0776	3.3001500000000004	4.5227	0.0292951	0.0128818	0.141862	0.0926667
chr1	174169651	174169751	257205	0	+	0.4	(0.378,0.408]	chr1	30720	96	INTRON	INTRON	RABGAP1L	ENSG00000152061.24	ENST00000357444.10:ENST00000251507.8:ENST00000681986.1:ENST00000635248.1:ENST00000457696.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	83	2	2.80155	3.30006	3.79857	0.00278307	2.23525e-4	0.0469265	0.0131533
chr13	25340233	25340333	5457584	0	+	0.32	(0.28,0.32]	chr13	522982	2	UTR3	UTR3:EXON_MRNA:INTRON	NUP58	ENSG00000139496.17	ENST00000481980.2:ENST00000490231.6:ENST00000695571.1:ENST00000477876.2:ENST00000695572.1:ENST00000695573.1:ENST00000381736.8:ENST00000381718.8:ENST00000695575.1:ENST00000695574.1:ENST00000695576.1:ENST00000695577.1:ENST00000476553.2:ENST00000695578.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	135	2	3.1651	3.2998849999999997	3.43467	8.79973e-4	1.38843e-4	0.0272129	0.0101519
chr16	89518982	89519082	6420447	0	+	0.5	(0.476,0.515]	chr16	616212	23	EXON_LNCRNA	EXON_LNCRNA:INTRON	SPG7	ENSG00000197912.16	ENST00000647079.1:ENST00000646303.1:ENST00000643649.1:ENST00000643307.1:ENST00000566371.6:ENST00000644498.1:ENST00000645897.1:ENST00000643668.1:ENST00000644225.1:ENST00000645818.2:ENST00000645977.1:ENST00000645063.1:ENST00000646263.1:ENST00000643724.1:ENST00000644781.1:ENST00000644901.1:ENST00000645042.1:ENST00000646531.1:ENST00000646930.1:ENST00000642436.1:ENST00000644210.1:ENST00000564047.2:ENST00000646589.1:ENST00000268704.7:ENST00000646826.1:ENST00000646716.1:ENST00000643345.1:ENST00000341316.6:ENST00000645533.1:ENST00000646958.1:ENST00000642371.1:ENST00000643105.1:ENST00000645354.1:ENST00000643957.1:ENST00000642334.1:ENST00000647227.1:ENST00000562775.2:ENST00000568151.1:ENST00000646445.1:ENST00000564409.2:ENST00000643954.1:ENST00000646399.1:ENST00000644671.1:ENST00000643178.1:ENST00000611189.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	127	2	3.05234	3.2998149999999997	3.54729	1.48283e-4	7.29001e-5	0.0105822	0.00767614
chr15	28279368	28279467	6123633	0	-	0.313131	(0.28,0.32]	chr15	583381	40	INTRON	INTRON	HERC2	ENSG00000128731.18	ENST00000261609.13:ENST00000564734.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	34	2	2.2609	3.299765	4.33863	0.0671429	0.0207276	0.183051	0.122348
chr8	47820318	47820418	3944285	0	-	0.41	(0.408,0.44]	chr8	361618	2	SS5_PROX	SS5_PROX:INTRON	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7	protein_coding	protein_coding	protein_coding	protein_coding	2	39	2	1.81572	3.2996	4.78348	0.0626779	0.00290352	0.175915	0.0494641
chr3	10040867	10040966	1362331	0	+	0.464646	(0.44,0.476]	chr3	143463	11	UTR3	UTR3:EXON_MRNA:INTRON	FANCD2	ENSG00000144554.13	ENST00000682647.1:ENST00000287647.7:ENST00000676013.1:ENST00000675286.1:ENST00000419585.5:ENST00000431693.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	106	2	3.14512	3.2994649999999996	3.45381	5.78837e-4	7.90762e-5	0.0223209	0.00739361
chr9	112316971	112317071	4317794	0	-	0.46	(0.44,0.476]	chr9	397079	187	INTRON	INTRON	PTBP3	ENSG00000119314.16	ENST00000334318.10:ENST00000458258.5:ENST00000374257.6:ENST00000374255.6:ENST00000343327.6:ENST00000487997.1:ENST00000210227.4:ENST00000450374.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	106	2	3.14512	3.2994649999999996	3.45381	5.78837e-4	7.90762e-5	0.0223209	0.00739361
chr16	70004158	70004258	6509082	0	-	0.49	(0.476,0.515]	chr16	630286	73	INTRON	INTRON	PDXDC2P-NPIPB14P	ENSG00000196696.13	ENST00000531894.5:ENST00000530079.5:ENST00000525331.6:ENST00000526478.5:ENST00000529089.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	5	110	2	2.48496	3.29941	4.11386	0.00143091	4.0075e-5	0.0340925	0.00513517
chr9	100332865	100332965	4308970	0	-	0.44	(0.408,0.44]	chr9	395874	23	INTRON	INTRON	TEX10	ENSG00000136891.14	ENST00000535814.5:ENST00000374902.9:ENST00000429235.1	protein_coding	protein_coding	protein_coding	protein_coding	3	47	2	2.26617	3.2992749999999997	4.33238	0.0218901	0.00649402	0.11491	0.0734343
chr1	26719516	26719616	51406	0	+	0.35	(0.32,0.35]	chr1	6542	216	INTRON	INTRON	ARID1A	ENSG00000117713.21	ENST00000430799.7:ENST00000324856.13:ENST00000637465.1:ENST00000457599.6	protein_coding	protein_coding	protein_coding	protein_coding	3	48	2	1.83315	3.29908	4.76501	0.0313348	0.0114287	0.144381	0.0886611
chr6	57138036	57138134	2878548	0	+	0.326531	(0.32,0.35]	chr6	273283	28	INTRON	INTRON	ZNF451	ENSG00000112200.17	ENST00000357489.7:ENST00000444273.6:ENST00000370706.9:ENST00000491832.6:ENST00000502749.1:ENST00000504603.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	48	2	1.83315	3.29908	4.76501	0.0313348	0.0114287	0.144381	0.0886611
chr9	91345823	91345923	4281063	0	-	0.34	(0.32,0.35]	chr9	393807	22	INTRON	INTRON	AUH	ENSG00000148090.12	ENST00000303617.5:ENST00000375731.9:ENST00000478465.5:ENST00000475023.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	48	2	1.83315	3.29908	4.76501	0.0313348	0.0114287	0.144381	0.0886611
chr19	4019835	4019935	7001314	0	+	0.58	(0.57,1]	chr19	694408	7	INTRON	INTRON	PIAS4	ENSG00000105229.7	ENST00000262971.3:ENST00000599999.5:ENST00000600566.5:ENST00000596144.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	28	2	1.89351	3.29889	4.70427	0.0255126	9.25341e-4	0.133676	0.0278396
chr22	20825013	20825112	7559344	0	-	0.383838	(0.378,0.408]	chr22	773203	2	INTRON	INTRON	PI4KA	ENSG00000241973.11	ENST00000255882.11:ENST00000485963.5:ENST00000449120.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	44	2	1.59317	3.29888	5.00459	0.0603812	0.00371142	0.19151	0.0535094
chr12	6848343	6848437	5260697	0	-	0.414894	(0.408,0.44]	chr12	501099	4	EXON_LNCRNA	EXON_LNCRNA:INTRON	CDCA3	ENSG00000111665.12	ENST00000422785.7:ENST00000604599.1:ENST00000603043.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	61	2	3.14706	3.2986250000000004	3.45019	0.00382411	0.00152664	0.0562562	0.0353936
chr15	83029863	83029963	6249062	0	-	0.36	(0.35,0.378]	chr15	596392	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	BTBD1	ENSG00000064726.10	ENST00000261721.9:ENST00000379403.2:ENST00000559652.5:ENST00000558344.1:ENST00000560015.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	87	2	2.82526	3.29862	3.77198	0.00269503	2.78147e-4	0.0466389	0.0148626
chr6	15383244	15383344	2824320	0	+	0.43	(0.408,0.44]	chr6	265198	86	INTRON	INTRON	JARID2	ENSG00000008083.14	ENST00000341776.7:ENST00000397311.4	protein_coding	protein_coding	protein_coding	protein_coding	4	51	2	1.84301	3.298495	4.75398	0.0174311	0.00703931	0.112689	0.0718189
chr15	66498908	66499008	6210593	0	-	0.34	(0.32,0.35]	chr15	592710	10	UTR3	UTR3:EXON_MRNA	RPL4	ENSG00000174444.15	ENST00000307961.11	protein_coding	protein_coding	protein_coding	protein_coding	2	47	2	2.22429	3.29849	4.37269	0.0226421	0.0154102	0.117557	0.108569
chr10	6169205	6169305	4386237	0	+	0.57	(0.515,0.57]	chr10	404834	48	INTRON	INTRON	PFKFB3	ENSG00000170525.21	ENST00000379789.8:ENST00000536985.6:ENST00000639949.1	protein_coding	protein_coding	protein_coding	protein_coding	2	53	2	3.05839	3.2984150000000003	3.53844	0.00485936	7.92613e-4	0.0640618	0.0259663
chr4	1718885	1718981	2095269	0	-	0.541667	(0.515,0.57]	chr4	207248	1	SSB_ADJ	SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TMEM129	ENSG00000168936.11	ENST00000303277.6:ENST00000382936.8:ENST00000536901.1:ENST00000480360.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	53	2	3.05839	3.2984150000000003	3.53844	0.00485936	7.92613e-4	0.0640618	0.0259663
chr7	44629855	44629955	3314520	0	+	0.51	(0.476,0.515]	chr7	307897	49	INTRON	INTRON	OGDH	ENSG00000105953.16	ENST00000439616.6:ENST00000443864.6:ENST00000449767.5:ENST00000447398.5:ENST00000419661.5:ENST00000222673.6:ENST00000444676.5	protein_coding	protein_coding	protein_coding	protein_coding	2	59	2	3.10264	3.298375	3.49411	0.00543163	9.23453e-4	0.0645052	0.0278392
chr19	10961829	10961929	7015564	0	+	0.35	(0.32,0.35]	chr19	697161	1	SS5_PROX	SS5_PROX:INTRON	SMARCA4	ENSG00000127616.20	ENST00000644737.1:ENST00000642726.1:ENST00000646484.1:ENST00000643549.1:ENST00000643296.1:ENST00000647230.1:ENST00000642628.1:ENST00000646510.1:ENST00000429416.8:ENST00000644760.1:ENST00000344626.10:ENST00000646693.2:ENST00000645460.1:ENST00000541122.6:ENST00000589677.5:ENST00000444061.8:ENST00000590574.6	protein_coding	protein_coding	protein_coding	protein_coding	5	126	2	2.5774	3.2982299999999998	4.01906	8.38017e-4	1.78578e-4	0.0263691	0.0121697
chr7	102554871	102554970	3588698	0	-	0.525253	(0.515,0.57]	chr7	335032	91	INTRON	INTRON	POLR2J3	ENSG00000168255.20	ENST00000489144.5:ENST00000464525.5:ENST00000379340.9:ENST00000486319.5:ENST00000503564.5:ENST00000511773.5:ENST00000513506.6:ENST00000508848.5:ENST00000504677.5:ENST00000506060.5:ENST00000502415.5:ENST00000507355.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	91	2	3.19161	3.298165	3.40472	3.49295e-4	8.47527e-5	0.017404	0.0077763
chr17	43096322	43096422	6775566	0	-	0.4	(0.378,0.408]	chr17	667785	4	SS3_PROX	SS3_PROX:INTRON	BRCA1	ENSG00000012048.23	ENST00000471181.7:ENST00000352993.7:ENST00000357654.9:ENST00000468300.5:ENST00000586385.5:ENST00000591534.5:ENST00000591849.5:ENST00000493795.5:ENST00000491747.6:ENST00000461221.5:ENST00000478531.5:ENST00000484087.5:ENST00000493919.5:ENST00000487825.5:ENST00000354071.7:ENST00000634433.1:ENST00000470026.5:ENST00000652672.1:ENST00000477152.5:ENST00000494123.5:ENST00000492859.5:ENST00000497488.1:ENST00000473961.5:ENST00000642945.1:ENST00000476777.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	40	2	1.8252	3.2981249999999998	4.77105	0.0619563	0.00330823	0.174514	0.0527031
chr2	68196264	68196364	1145959	0	-	0.4	(0.378,0.408]	chr2	122389	72	INTRON	INTRON	PPP3R1	ENSG00000221823.11	ENST00000234310.8:ENST00000409752.5:ENST00000409377.1	protein_coding	protein_coding	protein_coding	protein_coding	2	40	2	1.8252	3.2981249999999998	4.77105	0.0619563	0.00330823	0.174514	0.0527031
chr6	35386308	35386408	2852416	0	+	0.42	(0.408,0.44]	chr6	269491	388	INTRON	INTRON	PPARD	ENSG00000112033.14	ENST00000418635.6:ENST00000448077.6:ENST00000360694.8:ENST00000311565.4:ENST00000337400.6	protein_coding	protein_coding	protein_coding	protein_coding	3	47	2	1.53263	3.2980300000000002	5.06343	0.0733439	0.00101725	0.190051	0.0293497
chr8	140995502	140995602	4080021	0	-	0.52	(0.515,0.57]	chr8	370590	110	INTRON	INTRON	PTK2	ENSG00000169398.20	ENST00000696786.1:ENST00000522684.5:ENST00000395218.3:ENST00000521059.5:ENST00000519993.5:ENST00000340930.7:ENST00000524357.5:ENST00000521791.5:ENST00000523067.5:ENST00000520828.5:ENST00000519881.5:ENST00000520892.5:ENST00000517453.5:ENST00000520045.5:ENST00000521332.5:ENST00000524040.5:ENST00000523679.1:ENST00000524257.5:ENST00000523797.1:ENST00000519635.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	52	2	3.19178	3.2978300000000003	3.40388	0.00289534	0.00142538	0.0494641	0.0340865
chr2	240015946	240016043	1345636	0	-	0.412371	(0.408,0.44]	chr2	141100	7	INTRON	INTRON	NDUFA10	ENSG00000130414.13	ENST00000679183.1:ENST00000677057.1:ENST00000676782.1:ENST00000677407.1:ENST00000676929.1:ENST00000678455.1:ENST00000252711.7:ENST00000677692.1:ENST00000476216.6:ENST00000677395.1:ENST00000678188.1:ENST00000677979.1:ENST00000678914.1:ENST00000678562.1:ENST00000678832.1:ENST00000677155.1:ENST00000677764.1:ENST00000677294.1:ENST00000678468.1:ENST00000678158.1:ENST00000676491.1:ENST00000677114.1:ENST00000404554.5:ENST00000620965.5:ENST00000485344.6:ENST00000679308.1:ENST00000677567.1:ENST00000679158.1:ENST00000443626.5:ENST00000444548.6:ENST00000448880.6:ENST00000677490.1:ENST00000307300.8:ENST00000678898.1:ENST00000677368.1:ENST00000677263.1:ENST00000678289.1:ENST00000676784.1:ENST00000414580.2:ENST00000679332.1:ENST00000678737.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	36	2	2.07919	3.2976150000000004	4.51604	0.0291499	0.0137419	0.14147	0.0949306
chr21	37457506	37457606	7407138	0	+	0.41	(0.408,0.44]	chr21	754898	8	INTRON	INTRON	DYRK1A	ENSG00000157540.22	ENST00000646523.1:ENST00000647425.1:ENST00000647188.2:ENST00000647504.1:ENST00000644942.1:ENST00000338785.8:ENST00000643624.1:ENST00000643551.1:ENST00000426672.6:ENST00000398960.7:ENST00000646548.1:ENST00000645424.1:ENST00000643854.1:ENST00000455097.6:ENST00000642309.1:ENST00000645774.1:ENST00000398956.2	protein_coding	protein_coding	protein_coding	protein_coding	2	36	2	2.07919	3.2976150000000004	4.51604	0.0291499	0.0137419	0.14147	0.0949306
chr6	27847729	27847829	2839114	0	+	0.41	(0.408,0.44]	chr6	266457	57	INTRON	INTRON	H2BC15	ENSG00000233822.6	ENST00000449538.3:ENST00000606613.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	36	2	2.07919	3.2976150000000004	4.51604	0.0291499	0.0137419	0.14147	0.0949306
chrX	19353206	19353273	7629285	0	+	0.432836	(0.408,0.44]	chrX	781180	1	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	PDHA1	ENSG00000131828.14	ENST00000540249.5:ENST00000696704.1:ENST00000696705.1:ENST00000422285.7:ENST00000423505.6:ENST00000355808.10:ENST00000379805.4:ENST00000417819.6:ENST00000479146.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	36	2	2.07919	3.2976150000000004	4.51604	0.0291499	0.0137419	0.14147	0.0949306
chr3	171342436	171342536	1866269	0	-	0.36	(0.35,0.378]	chr3	186980	1139	INTRON	INTRON	TNIK	ENSG00000154310.17	ENST00000436636.7:ENST00000341852.10:ENST00000284483.12:ENST00000475336.5:ENST00000357327.9:ENST00000460047.5:ENST00000488470.5:ENST00000470834.5	protein_coding	protein_coding	protein_coding	protein_coding	4	104	2	2.59827	3.2973850000000002	3.9965	0.0016492	1.64039e-4	0.0375159	0.0116917
chr7	102091873	102091973	3369114	0	+	0.51	(0.476,0.515]	chr7	315245	211	INTRON	INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000497815.5:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000558469.5:ENST00000560541.5:ENST00000558836.5:ENST00000606749.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	40	2	2.16377	3.29735	4.43093	0.0243026	0.00931369	0.12011	0.0855292
chr1	39259599	39259697	76444	0	+	0.377551	(0.35,0.378]	chr1	9738	17	EXON_MRNA	EXON_MRNA:INTRON	MACF1	ENSG00000127603.32	ENST00000361689.7:ENST00000689911.1:ENST00000567887.5:ENST00000372915.8:ENST00000472385.2:ENST00000693209.1:ENST00000524432.5:ENST00000688212.1:ENST00000672812.1:ENST00000564288.6:ENST00000480624.5:ENST00000671089.2:ENST00000690080.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	28	2	2.39746	3.2972799999999998	4.1971	0.041314	0.0367539	0.161534	0.138959
chr1	213170849	213170948	311904	0	+	0.363636	(0.35,0.378]	chr1	35951	25	INTRON	INTRON	RPS6KC1	ENSG00000136643.12	ENST00000615329.4:ENST00000543354.5:ENST00000614059.4:ENST00000543470.5:ENST00000366960.8:ENST00000366959.4:ENST00000490299.5:ENST00000468069.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	28	2	2.39746	3.2972799999999998	4.1971	0.041314	0.0367539	0.161534	0.138959
chr1	223794627	223794725	642843	0	-	0.357143	(0.35,0.378]	chr1	75882	8	INTRON	INTRON	TP53BP2	ENSG00000143514.17	ENST00000343537.12:ENST00000391878.6:ENST00000483398.5:ENST00000498843.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	28	2	2.39746	3.2972799999999998	4.1971	0.041314	0.0367539	0.161534	0.138959
chr1	246218824	246218924	677823	0	-	0.36	(0.35,0.378]	chr1	79733	252	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000453676.5:ENST00000462422.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	28	2	2.39746	3.2972799999999998	4.1971	0.041314	0.0367539	0.161534	0.138959
chr5	135363196	135363294	2728553	0	-	0.367347	(0.35,0.378]	chr5	256813	4	INTRON	INTRON	MACROH2A1	ENSG00000113648.17	ENST00000511689.6:ENST00000304332.8:ENST00000687629.1:ENST00000688649.1:ENST00000312469.8:ENST00000360597.8:ENST00000506671.5:ENST00000423969.6:ENST00000510038.1:ENST00000507868.5:ENST00000508785.5:ENST00000513210.5:ENST00000504197.5:ENST00000508120.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	28	2	2.39746	3.2972799999999998	4.1971	0.041314	0.0367539	0.161534	0.138959
chr5	149510765	149510865	2750664	0	-	0.36	(0.35,0.378]	chr5	259026	3	SS5_PROX	SS5_PROX:INTRON	CSNK1A1	ENSG00000113712.19	ENST00000261798.10:ENST00000377843.8:ENST00000657001.1:ENST00000515768.6:ENST00000606719.6:ENST00000657462.1:ENST00000661952.1:ENST00000504676.5:ENST00000515435.5:ENST00000662268.1:ENST00000657706.1:ENST00000606826.5:ENST00000503350.6:ENST00000606299.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	28	2	2.39746	3.2972799999999998	4.1971	0.041314	0.0367539	0.161534	0.138959
chr1	91504103	91504201	161140	0	+	0.44898	(0.44,0.476]	chr1	17379	19	INTRON	INTRON	CDC7	ENSG00000097046.13	ENST00000234626.11:ENST00000428239.5:ENST00000426137.1:ENST00000497611.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	43	2	1.69402	3.29701	4.9	0.0456129	0.00423315	0.164236	0.0572185
chr21	44808178	44808270	7468761	0	-	0.445652	(0.44,0.476]	chr21	761189	8	INTRON	INTRON	SUMO3	ENSG00000184900.16	ENST00000479153.1:ENST00000411651.6:ENST00000332859.11:ENST00000397898.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	43	2	1.69402	3.29701	4.9	0.0456129	0.00423315	0.164236	0.0572185
chr13	112697908	112698008	5546329	0	+	0.46	(0.44,0.476]	chr13	529917	6	INTRON	INTRON	ATP11A	ENSG00000068650.19	ENST00000375645.8:ENST00000375630.6:ENST00000487903.5:ENST00000419448.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	43	2	1.62896	3.296935	4.96491	0.0546679	0.0034249	0.182674	0.0517761
chr1	207329619	207329718	303348	0	+	0.525253	(0.515,0.57]	chr1	34907	22	INTRON	INTRON	CD55	ENSG00000196352.18	ENST00000695822.1:ENST00000695823.1:ENST00000695826.1:ENST00000695825.1:ENST00000695824.1:ENST00000367063.6:ENST00000695827.1:ENST00000695828.1:ENST00000645323.1:ENST00000391921.9:ENST00000695829.1:ENST00000367064.9:ENST00000314754.12:ENST00000644836.1:ENST00000343420.6:ENST00000476590.1:ENST00000465534.5:ENST00000488171.6:ENST00000618707.2:ENST00000635614.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	109	2	3.25533	3.2968599999999997	3.33839	1.61956e-4	3.44919e-5	0.0116382	0.00467863
chr4	108658047	108658147	2018469	0	+	0.46	(0.44,0.476]	chr4	200731	4	SS5_PROX	SS5_PROX:INTRON	OSTC	ENSG00000198856.13	ENST00000613215.4:ENST00000361564.9:ENST00000512478.2	protein_coding	protein_coding	protein_coding	protein_coding	5	55	2	1.44993	3.296855	5.14378	0.045367	0.00184943	0.164236	0.0388609
chr21	9123162	9123262	7426571	0	-	0.26	[0,0.28]	chr21	757579	349	INTRON	INTRON	TEKT4P2	ENSG00000188681.12	ENST00000690061.1:ENST00000689141.1:ENST00000688310.1:ENST00000687537.1:ENST00000690096.1:ENST00000687888.1:ENST00000690389.1:ENST00000684989.1:ENST00000416067.6:ENST00000693307.1:ENST00000692383.1:ENST00000685666.1:ENST00000688451.1:ENST00000691190.1:ENST00000685532.1:ENST00000687488.1:ENST00000690713.1:ENST00000691834.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	2	51	2	1.812	3.29671	4.78142	0.0729149	0.00943974	0.189235	0.0861183
chr20	32534653	32534749	7326412	0	-	0.645833	(0.57,1]	chr20	746136	8	INTRON	INTRON	NOL4L	ENSG00000197183.15	ENST00000621426.7:ENST00000375678.7:ENST00000201961.6:ENST00000470428.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	34	2	3.02967	3.29668	3.56369	0.00471306	4.26536e-4	0.0631419	0.0189958
chr22	50207503	50207600	7544079	0	+	0.690722	(0.57,1]	chr22	770979	6	INTRON	INTRON	SELENOO	ENSG00000073169.15	ENST00000380903.7:ENST00000492092.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	34	2	3.02967	3.29668	3.56369	0.00471306	4.26536e-4	0.0631419	0.0189958
chr8	127941820	127941918	3861536	0	+	0.571429	(0.57,1]	chr8	355463	15	INTRON	INTRON	PVT1	ENSG00000249859.13	ENST00000667305.1:ENST00000690350.1:ENST00000653522.1:ENST00000661830.1:ENST00000657289.1:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000656880.1:ENST00000660200.1:ENST00000657211.1:ENST00000653845.1:ENST00000517525.2:ENST00000665856.1:ENST00000651587.1:ENST00000692980.1:ENST00000666353.1:ENST00000654324.1:ENST00000657693.1:ENST00000666080.1:ENST00000667539.1:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000664293.1:ENST00000662410.1:ENST00000670795.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000654091.1:ENST00000657356.1:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000662061.1:ENST00000656491.1:ENST00000667714.1:ENST00000654105.1:ENST00000665721.1:ENST00000660438.1:ENST00000659326.1:ENST00000666842.1:ENST00000517790.2:ENST00000654369.1:ENST00000664995.1:ENST00000656532.1:ENST00000661988.1:ENST00000670714.1:ENST00000669951.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000656693.1:ENST00000668123.1:ENST00000666776.1:ENST00000664299.1:ENST00000669272.1:ENST00000659912.1:ENST00000670532.1:ENST00000660896.1:ENST00000667149.1:ENST00000523068.2:ENST00000519481.6:ENST00000669082.1:ENST00000671088.1:ENST00000670204.1:ENST00000652695.1:ENST00000517838.6:ENST00000663461.1:ENST00000513868.6:ENST00000670626.1:ENST00000669407.1	lncRNA	lncRNA	lncRNA	lncRNA	2	34	2	3.02967	3.29668	3.56369	0.00471306	4.26536e-4	0.0631419	0.0189958
chr19	58255180	58255280	7106793	0	+	0.6	(0.57,1]	chr19	713342	39	INTRON	INTRON	ZNF544	ENSG00000198131.15	ENST00000599227.5:ENST00000687789.1:ENST00000594384.5:ENST00000652201.1:ENST00000596825.5:ENST00000596929.5:ENST00000596677.5:ENST00000600220.5:ENST00000600044.5:ENST00000596652.5:ENST00000599953.1:ENST00000598880.5:ENST00000595981.5:ENST00000269829.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	92	2	2.97211	3.29661	3.62111	4.13149e-5	1.50694e-6	0.00519938	8.03394e-4
chr7	138469299	138469399	3434731	0	+	0.43	(0.408,0.44]	chr7	319959	76	INTRON	INTRON	TRIM24	ENSG00000122779.18	ENST00000343526.9:ENST00000415680.6:ENST00000497516.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	244	2	3.26599	3.29633	3.32667	2.42166e-5	1.21996e-6	0.00404178	6.42785e-4
chr8	129464279	129464379	4059917	0	-	0.36	(0.35,0.378]	chr8	369602	70	INTRON	INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1:ENST00000676273.1:ENST00000667643.1:ENST00000668791.1:ENST00000663716.1:ENST00000663572.1:ENST00000676148.1:ENST00000667962.1:ENST00000674877.1:ENST00000675316.1:ENST00000674656.1:ENST00000446592.7:ENST00000667341.1:ENST00000675186.1:ENST00000652971.1:ENST00000661447.1:ENST00000674863.1:ENST00000675498.1:ENST00000675527.1:ENST00000676108.1:ENST00000657647.1:ENST00000675589.1:ENST00000675913.1:ENST00000675109.1:ENST00000671632.1:ENST00000671311.1:ENST00000676099.1:ENST00000660652.1:ENST00000675522.1:ENST00000675183.1:ENST00000658861.1:ENST00000663991.1:ENST00000675044.1:ENST00000675435.1:ENST00000674639.1:ENST00000676069.1:ENST00000675532.1:ENST00000674762.1:ENST00000523151.6:ENST00000675948.1:ENST00000665364.1:ENST00000657251.1:ENST00000675166.1:ENST00000674883.1:ENST00000675867.1:ENST00000674580.1:ENST00000675393.1:ENST00000520048.1:ENST00000674906.1:ENST00000676030.1:ENST00000670588.1:ENST00000675072.1:ENST00000664936.1:ENST00000652914.1:ENST00000657069.1	lncRNA	lncRNA	lncRNA	lncRNA	2	44	2	2.19034	3.29581	4.40128	0.023941	0.0120289	0.119443	0.0962115
chr4	165339078	165339178	2079750	0	+	0.37	(0.35,0.378]	chr4	205580	3	SS5_PROX	SS5_PROX:INTRON	MSMO1	ENSG00000052802.13	ENST00000507013.5:ENST00000261507.11:ENST00000393766.6:ENST00000504317.1	protein_coding	protein_coding	protein_coding	protein_coding	6	71	2	1.87195	3.29574	4.71953	0.0103314	0.00738821	0.0850389	0.0769106
chr1	21781557	21781657	396854	0	-	0.59	(0.57,1]	chr1	47346	3	SS5_PROX	SS5_PROX:INTRON	USP48	ENSG00000090686.16	ENST00000400301.5:ENST00000308271.14:ENST00000529637.5:ENST00000421625.6:ENST00000527823.5:ENST00000532737.1:ENST00000489108.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	80	2	3.20917	3.2957349999999996	3.3823	2.02775e-4	1.76823e-6	0.0129814	8.01021e-4
chr1	227283305	227283405	651369	0	-	0.3	(0.28,0.32]	chr1	77110	182	INTRON	INTRON	CDC42BPA	ENSG00000143776.20	ENST00000366766.8:ENST00000366769.7:ENST00000334218.9:ENST00000366767.7:ENST00000366764.8:ENST00000478573.6:ENST00000682551.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	42	2	2.08149	3.29565	4.50981	0.031124	0.0275554	0.143644	0.123904
chr3	128752839	128752939	1497477	0	+	0.3	(0.28,0.32]	chr3	156330	261	INTRON	INTRON	RAB7A	ENSG00000075785.14	ENST00000676214.1:ENST00000675864.1:ENST00000675712.1:ENST00000676425.1:ENST00000490093.6:ENST00000675342.1:ENST00000265062.8:ENST00000674748.1:ENST00000493186.6:ENST00000482525.5:ENST00000491681.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	42	2	2.08149	3.29565	4.50981	0.031124	0.0275554	0.143644	0.123904
chr5	103260191	103260291	2441019	0	+	0.3	(0.28,0.32]	chr5	234370	4	SS5_PROX	SS5_PROX:INTRON	MACIR	ENSG00000181751.10	ENST00000319933.7:ENST00000515669.5:ENST00000510890.1	protein_coding	protein_coding	protein_coding	protein_coding	2	42	2	2.08149	3.29565	4.50981	0.031124	0.0275554	0.143644	0.123904
chr7	158658808	158658908	3688314	0	-	0.32	(0.28,0.32]	chr7	342171	4	SS3_PROX	SS3_PROX:INTRON	NCAPG2	ENSG00000146918.20	ENST00000356309.8:ENST00000432615.5:ENST00000409423.5:ENST00000441982.5:ENST00000467785.5:ENST00000409339.3:ENST00000474940.5:ENST00000475918.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	42	2	2.08149	3.29565	4.50981	0.031124	0.0275554	0.143644	0.123904
chr19	55664937	55665036	7101633	0	+	0.575758	(0.57,1]	chr19	712540	8	INTRON	INTRON	U2AF2	ENSG00000063244.13	ENST00000450554.6:ENST00000308924.9:ENST00000592874.1:ENST00000590551.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	28	2	1.98953	3.29557	4.60161	0.0182848	0.00142229	0.115629	0.0340865
chrX	74242832	74242908	7841103	0	-	0.578947	(0.57,1]	chrX	799714	4	EXON_SMALL	EXON_SMALL:INTRON	FTX:RN7SL648P	ENSG00000230590.12:ENSG00000265727.2	ENST00000603672.5:ENST00000430772.6:ENST00000602776.6:ENST00000638681.1:ENST00000652319.1:ENST00000661133.1:ENST00000652071.1:ENST00000602812.6:ENST00000651703.1:ENST00000653018.1:ENST00000658448.1:ENST00000662240.1:ENST00000652527.1:ENST00000651451.1:ENST00000657611.1:ENST00000660481.1:ENST00000659574.1:ENST00000661084.1:ENST00000662494.1:ENST00000670936.1:ENST00000602420.6:ENST00000658203.1:ENST00000638985.1:ENST00000691187.1:ENST00000603037.2:ENST00000687056.1:ENST00000654870.2:ENST00000652540.1:ENST00000652331.2:ENST00000652013.1:ENST00000669263.1:ENST00000657070.1:ENST00000665069.1:ENST00000651936.1:ENST00000652496.1:ENST00000653874.2:ENST00000661335.1:ENST00000664123.1:ENST00000658439.1:ENST00000666535.1:ENST00000652970.1:ENST00000423992.3:ENST00000665313.2:ENST00000651140.1:ENST00000660100.1:ENST00000693483.1:ENST00000478418.3	misc_RNA	misc_RNA	misc_RNA:lncRNA	misc_RNA:lncRNA	3	28	2	1.79063	3.29537	4.80011	0.0356001	6.07135e-4	0.15159	0.0226059
chr1	3861202	3861301	3350	0	+	0.444444	(0.44,0.476]	chr1	718	3	INTRON	INTRON	DFFB	ENSG00000169598.17	ENST00000338895.7:ENST00000491998.5:ENST00000468793.5:ENST00000339350.7:ENST00000477548.5:ENST00000378209.8:ENST00000378206.5:ENST00000475969.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	27	2	2.58033	3.295355	4.01038	0.0433743	0.0247511	0.148082	0.131869
chr1	161771580	161771679	235898	0	+	0.444444	(0.44,0.476]	chr1	28516	44	INTRON	INTRON	ATF6	ENSG00000118217.7	ENST00000680688.1:ENST00000679853.1:ENST00000681738.1:ENST00000681801.1:ENST00000681779.1:ENST00000367942.4:ENST00000681001.1:ENST00000679886.1:ENST00000681169.1:ENST00000681492.1:ENST00000680481.1:ENST00000680180.1:ENST00000681187.1:ENST00000680462.1:ENST00000680633.1:ENST00000681557.1:ENST00000681912.1:ENST00000679833.1:ENST00000681541.1:ENST00000681036.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	27	2	2.58033	3.295355	4.01038	0.0433743	0.0247511	0.148082	0.131869
chr14	100244319	100244419	5814857	0	+	0.46	(0.44,0.476]	chr14	551330	40	INTRON	INTRON	YY1	ENSG00000100811.14	ENST00000262238.10:ENST00000553625.5:ENST00000554804.1:ENST00000651219.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	27	2	2.58033	3.295355	4.01038	0.0433743	0.0247511	0.148082	0.131869
chr15	74637504	74637602	6221731	0	-	0.459184	(0.44,0.476]	chr15	594052	15	INTRON	INTRON	EDC3	ENSG00000179151.13	ENST00000315127.9:ENST00000647659.1:ENST00000565602.5:ENST00000426797.7:ENST00000568176.5:ENST00000562174.5:ENST00000566219.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	27	2	2.58033	3.295355	4.01038	0.0433743	0.0247511	0.148082	0.131869
chr15	75851186	75851286	6065138	0	+	0.46	(0.44,0.476]	chr15	577537	62	INTRON	INTRON	UBE2Q2	ENSG00000140367.12	ENST00000569423.5:ENST00000267938.9:ENST00000561723.5:ENST00000561851.5:ENST00000562635.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	27	2	2.58033	3.295355	4.01038	0.0433743	0.0247511	0.148082	0.131869
chr16	11004704	11004804	6288158	0	+	0.45	(0.44,0.476]	chr16	602178	10	INTRON	INTRON	CLEC16A	ENSG00000038532.16	ENST00000409790.6:ENST00000409552.4:ENST00000494853.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	27	2	2.58033	3.295355	4.01038	0.0433743	0.0247511	0.148082	0.131869
chr3	11320377	11320476	1364880	0	+	0.474747	(0.44,0.476]	chr3	143872	45	INTRON	INTRON	ATG7	ENSG00000197548.13	ENST00000693202.1:ENST00000435760.6:ENST00000685771.1:ENST00000354449.7:ENST00000354956.9:ENST00000446450.6:ENST00000488924.5:ENST00000424071.5:ENST00000434066.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	27	2	2.58033	3.295355	4.01038	0.0433743	0.0247511	0.148082	0.131869
chr7	5911267	5911360	3272699	0	+	0.44086	(0.44,0.476]	chr7	304227	8	INTRON	INTRON	CCZ1	ENSG00000122674.12	ENST00000325974.9:ENST00000628813.2	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	2.58033	3.295355	4.01038	0.0433743	0.0247511	0.148082	0.131869
chr8	41689544	41689635	3937948	0	-	0.450549	(0.44,0.476]	chr8	360948	6	INTRON	INTRON	ANK1	ENSG00000029534.21	ENST00000347528.8:ENST00000265709.13:ENST00000289734.13:ENST00000520299.5:ENST00000645531.1:ENST00000524227.5:ENST00000518061.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	27	2	2.58033	3.295355	4.01038	0.0433743	0.0247511	0.148082	0.131869
chr9	5823202	5823301	4231135	0	-	0.454545	(0.44,0.476]	chr9	388959	14	EXON_MRNA	EXON_MRNA:INTRON	ERMP1	ENSG00000099219.15	ENST00000688202.1:ENST00000689364.1:ENST00000690284.1:ENST00000689268.1:ENST00000487088.6:ENST00000689030.1:ENST00000688887.1:ENST00000693487.1:ENST00000462592.5:ENST00000689671.1:ENST00000686418.1:ENST00000692974.1:ENST00000691560.1:ENST00000684950.1:ENST00000214893.10:ENST00000685462.1:ENST00000339450.10:ENST00000690648.1:ENST00000689742.1:ENST00000688899.1:ENST00000691251.1:ENST00000689259.1:ENST00000690037.1:ENST00000693638.1:ENST00000489219.5:ENST00000475005.1:ENST00000692524.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	27	2	2.58033	3.295355	4.01038	0.0433743	0.0247511	0.148082	0.131869
chr9	130092781	130092881	4211353	0	+	0.46	(0.44,0.476]	chr9	386040	4	SS5_PROX	SS5_PROX:INTRON	GPR107	ENSG00000148358.20	ENST00000372406.5:ENST00000372410.7:ENST00000347136.11:ENST00000493417.5:ENST00000610997.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	27	2	2.58033	3.295355	4.01038	0.0433743	0.0247511	0.148082	0.131869
chr10	21605833	21605933	4405135	0	+	0.26	[0,0.28]	chr10	406466	100	INTRON	INTRON	MLLT10	ENSG00000078403.17	ENST00000651097.1:ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000650772.1:ENST00000651298.1:ENST00000495130.5:ENST00000377059.7:ENST00000652258.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	45	2	1.8986	3.295255	4.69191	0.0531512	0.0269474	0.179787	0.123442
chr12	79823281	79823380	5375407	0	-	0.232323	[0,0.28]	chr12	512760	7	INTRON	INTRON	PPP1R12A	ENSG00000058272.19	ENST00000261207.9:ENST00000450142.7:ENST00000437004.6:ENST00000546369.5:ENST00000550107.5:ENST00000547330.5:ENST00000550510.5	protein_coding	protein_coding	protein_coding	protein_coding	2	45	2	1.8986	3.295255	4.69191	0.0531512	0.0269474	0.179787	0.123442
chr18	2753949	2754049	6865889	0	+	0.23	[0,0.28]	chr18	680130	15	EXON_MRNA	EXON_MRNA:INTRON	SMCHD1	ENSG00000101596.17	ENST00000320876.11:ENST00000688342.1:ENST00000693213.1:ENST00000577880.5:ENST00000584897.5:ENST00000583441.2:ENST00000690757.1:ENST00000686763.1:ENST00000686864.1:ENST00000688708.1:ENST00000645355.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	45	2	1.8986	3.295255	4.69191	0.0531512	0.0269474	0.179787	0.123442
chr5	53886075	53886172	2616659	0	-	0.268041	[0,0.28]	chr5	248822	23	UTR3	UTR3:EXON_MRNA	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5	protein_coding	protein_coding	protein_coding	protein_coding	2	45	2	1.8986	3.295255	4.69191	0.0531512	0.0269474	0.179787	0.123442
chr2	175085456	175085555	1271494	0	-	0.373737	(0.35,0.378]	chr2	134392	43	INTRON	INTRON	ATF2	ENSG00000115966.18	ENST00000345739.9:ENST00000426833.7:ENST00000264110.7:ENST00000409437.5:ENST00000409635.5:ENST00000435004.6:ENST00000428760.5:ENST00000392544.5:ENST00000417080.5:ENST00000456655.5:ENST00000421438.5:ENST00000429579.5:ENST00000415955.5:ENST00000409499.5:ENST00000478905.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	38	2	2.10859	3.295215	4.48184	0.0272722	0.0191702	0.136494	0.108861
chr7	155703874	155703974	3452494	0	+	0.36	(0.35,0.378]	chr7	322678	25	INTRON	INTRON	RBM33	ENSG00000184863.11	ENST00000401878.8:ENST00000307403.6:ENST00000440108.5:ENST00000392761.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	38	2	2.10859	3.295215	4.48184	0.0272722	0.0191702	0.136494	0.108861
chr2	55004688	55004788	1120946	0	-	0.44	(0.408,0.44]	chr2	120142	166	INTRON	INTRON	RTN4	ENSG00000115310.19	ENST00000394609.6:ENST00000404909.5:ENST00000394611.6:ENST00000317610.11:ENST00000357732.8:ENST00000337526.11:ENST00000357376.7:ENST00000405240.5:ENST00000438462.1	protein_coding	protein_coding	protein_coding	protein_coding	7	136	2	2.68491	3.29519	3.90547	2.03612e-4	9.78505e-5	0.0129859	0.00831756
chr2	134925873	134925973	872308	0	+	0.51	(0.476,0.515]	chr2	97663	56	INTRON	INTRON	CCNT2	ENSG00000082258.13	ENST00000419781.5:ENST00000446247.5:ENST00000264157.10:ENST00000452839.5:ENST00000295238.10:ENST00000475094.1:ENST00000417175.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	121	2	2.13504	3.295185	4.45533	0.00395791	5.15266e-6	0.0549214	0.00155518
chrX	21958618	21958718	7630035	0	+	0.41	(0.408,0.44]	chrX	781289	169	INTRON	INTRON	SMS	ENSG00000102172.16	ENST00000404933.7:ENST00000379404.5:ENST00000478094.1:ENST00000457085.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	40	2	2.05947	3.295175	4.53088	0.0333232	0.00669275	0.134145	0.0738715
chr5	54082069	54082169	2618627	0	-	0.43	(0.408,0.44]	chr5	248841	61	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	60	2	3.25948	3.2950749999999998	3.33067	0.00246454	0.0024459	0.0459102	0.0445752
chrX	118383644	118383744	7707484	0	+	0.36	(0.35,0.378]	chrX	788540	48	INTRON	INTRON	WDR44	ENSG00000131725.14	ENST00000371822.9:ENST00000254029.8:ENST00000371825.7:ENST00000493448.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	58	2	1.43253	3.29488	5.15723	0.0486238	0.00272706	0.173047	0.0467523
chr10	50603530	50603630	4620486	0	-	0.36	(0.35,0.378]	chr10	425458	129	INTRON	INTRON	SGMS1	ENSG00000198964.14	ENST00000429490.5:ENST00000361781.7:ENST00000619438.4:ENST00000609445.5:ENST00000608287.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	31	2	2.39939	3.294805	4.19022	0.0458078	0.0209891	0.149888	0.122348
chr11	118785551	118785644	5046314	0	-	0.376344	(0.35,0.378]	chr11	475800	1	SS5_PROX	SS5_PROX:INTRON	DDX6	ENSG00000110367.14	ENST00000534980.7:ENST00000620157.4:ENST00000526070.2:ENST00000525082.1:ENST00000531971.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	31	2	2.39939	3.294805	4.19022	0.0458078	0.0209891	0.149888	0.122348
chr12	11892197	11892296	5079040	0	+	0.373737	(0.35,0.378]	chr12	480104	7	UTR3	UTR3:EXON_MRNA	ETV6	ENSG00000139083.11	ENST00000396373.9	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	2.39939	3.294805	4.19022	0.0458078	0.0209891	0.149888	0.122348
chr12	49007249	49007346	5320216	0	-	0.360825	(0.35,0.378]	chr12	506659	10	INTRON	INTRON	PRKAG1	ENSG00000181929.13	ENST00000548065.7:ENST00000316299.9:ENST00000547306.5:ENST00000546531.5:ENST00000552212.5:ENST00000551696.5:ENST00000550125.5:ENST00000548950.5:ENST00000549726.5:ENST00000551121.5:ENST00000550448.5:ENST00000552463.5:ENST00000548857.5:ENST00000548605.5:ENST00000547082.1:ENST00000547125.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	31	2	2.39939	3.294805	4.19022	0.0458078	0.0209891	0.149888	0.122348
chr15	42270375	42270472	6155979	0	-	0.371134	(0.35,0.378]	chr15	585900	20	INTRON	INTRON	TMEM87A	ENSG00000103978.16	ENST00000389834.9:ENST00000448392.5:ENST00000562946.5:ENST00000569075.5:ENST00000568400.5:ENST00000563371.5:ENST00000561578.5:ENST00000566474.5:ENST00000307216.10:ENST00000568432.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	31	2	2.39939	3.294805	4.19022	0.0458078	0.0209891	0.149888	0.122348
chr1	204534718	204534818	297605	0	+	0.5	(0.476,0.515]	chr1	34289	15	INTRON	INTRON	MDM4	ENSG00000198625.14	ENST00000367183.7:ENST00000391947.6:ENST00000454264.6:ENST00000612738.4:ENST00000614459.4:ENST00000616250.4:ENST00000367182.8:ENST00000463049.5:ENST00000470908.5:ENST00000471783.1:ENST00000367180.5:ENST00000507825.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	152	2	3.26855	3.29466	3.32077	6.60703e-5	3.02034e-5	0.0071649	0.0043803
chr14	76321004	76321104	5797209	0	+	0.32	(0.28,0.32]	chr14	549230	97	INTRON	INTRON	ESRRB	ENSG00000119715.15	ENST00000512784.6	protein_coding	protein_coding	protein_coding	protein_coding	2	75	2	3.22074	3.294645	3.36855	0.00362783	0.00305882	0.055479	0.0494118
chr12	110732383	110732483	5411428	0	-	0.37	(0.35,0.378]	chr12	516737	5	UTR5	UTR5:EXON_MRNA:SS3_PROX:INTRON	PPP1CC	ENSG00000186298.12	ENST00000335007.10:ENST00000340766.9:ENST00000546933.5:ENST00000550991.5:ENST00000551676.5:ENST00000620030.1:ENST00000551690.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:processed_transcript	2	66	2	2.78212	3.294565	3.80701	0.0168532	2.34133e-4	0.103549	0.0135358
chr8	144374207	144374307	3882078	0	+	0.61	(0.57,1]	chr8	356970	1	SS5_PROX	SS5_PROX:INTRON	ADCK5	ENSG00000173137.12	ENST00000534714.5:ENST00000526231.6:ENST00000533715.2:ENST00000529654.5:ENST00000308860.11:ENST00000525136.1:ENST00000532190.2:ENST00000526833.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	71	2	3.13943	3.2945599999999997	3.44969	3.01503e-4	5.72554e-6	0.0155054	0.00177762
chr10	5777541	5777641	4544556	0	-	0.43	(0.408,0.44]	chr10	419772	32	INTRON	INTRON	GDI2	ENSG00000057608.17	ENST00000380191.9:ENST00000447751.5:ENST00000380181.7:ENST00000456041.5	protein_coding	protein_coding	protein_coding	protein_coding	3	43	2	1.69566	3.294465	4.89327	0.0453922	0.00458906	0.164236	0.0595107
chr2	175160043	175160143	1272260	0	-	0.42	(0.408,0.44]	chr2	134482	85	INTRON	INTRON	ATF2	ENSG00000115966.18	ENST00000345739.9:ENST00000426833.7:ENST00000264110.7:ENST00000409635.5:ENST00000428760.5:ENST00000392544.5:ENST00000417080.5:ENST00000456655.5:ENST00000421438.5:ENST00000429579.5:ENST00000415955.5:ENST00000409499.5:ENST00000435231.6:ENST00000437522.5:ENST00000409833.5:ENST00000413123.5:ENST00000445349.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	43	2	1.69566	3.294465	4.89327	0.0453922	0.00458906	0.164236	0.0595107
chr11	57418287	57418387	4953361	0	-	0.44	(0.408,0.44]	chr11	464932	4	SS3_PROX	SS3_PROX:INTRON	ENSG00000254979:SLC43A3	ENSG00000254979.5:ENSG00000134802.18	ENST00000534081.5:ENST00000395124.6:ENST00000395123.6:ENST00000352187.5:ENST00000529554.5:ENST00000533524.5:ENST00000530005.5:ENST00000528098.5:ENST00000529113.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	43	2	1.6306	3.294385	4.95817	0.0544158	0.00372419	0.182272	0.0535094
chr3	158266856	158266956	1539851	0	+	0.44	(0.408,0.44]	chr3	160296	352	INTRON	INTRON	RSRC1	ENSG00000174891.14	ENST00000480820.5:ENST00000295930.7:ENST00000471994.5:ENST00000683733.1:ENST00000682221.1:ENST00000683831.1:ENST00000683516.1:ENST00000482822.3:ENST00000476899.6:ENST00000464171.5:ENST00000611884.5:ENST00000682164.1:ENST00000684604.1:ENST00000683899.1:ENST00000682500.1:ENST00000684683.1:ENST00000312179.10:ENST00000475278.6:ENST00000480119.5:ENST00000471911.5:ENST00000683137.1:ENST00000477788.5:ENST00000496268.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	43	2	1.6306	3.294385	4.95817	0.0544158	0.00372419	0.182272	0.0535094
chr18	2695479	2695575	6865268	0	+	0.5	(0.476,0.515]	chr18	679986	4	INTRON	INTRON	SMCHD1	ENSG00000101596.17	ENST00000320876.11:ENST00000688342.1:ENST00000684915.1:ENST00000581226.1:ENST00000693213.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	43	2	1.61586	3.294195	4.97253	0.0567093	0.00311573	0.185107	0.0498063
chr1	29016461	29016558	59982	0	+	0.453608	(0.44,0.476]	chr1	7661	3	INTRON	INTRON	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000647918.1:ENST00000646800.1:ENST00000644342.1:ENST00000646189.1:ENST00000482464.6:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000646260.1:ENST00000373798.5:ENST00000644600.1:ENST00000649674.1:ENST00000643173.1:ENST00000343067.9:ENST00000644780.1:ENST00000650265.1:ENST00000648181.1:ENST00000643604.1:ENST00000648891.1:ENST00000373797.2:ENST00000349460.9:ENST00000645184.1:ENST00000645111.1:ENST00000643302.1:ENST00000645999.1:ENST00000642643.1:ENST00000636666.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	43	2	1.75627	3.294145	4.83202	0.0380723	0.00525002	0.157702	0.0633615
chr1	50683903	50684003	449484	0	-	0.32	(0.28,0.32]	chr1	54229	280	INTRON	INTRON	FAF1	ENSG00000185104.21	ENST00000396153.7:ENST00000494400.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	56	2	1.56134	3.2939999999999996	5.02666	0.0740624	0.0027935	0.191153	0.0488769
chr6	37466273	37466372	2856845	0	+	0.444444	(0.44,0.476]	chr6	270152	29	INTRON	INTRON	CMTR1	ENSG00000137200.13	ENST00000373451.9	protein_coding	protein_coding	protein_coding	protein_coding	3	44	2	1.98146	3.293965	4.60647	0.0186013	0.0102339	0.117264	0.0850389
chr20	5586369	5586469	7312095	0	-	0.33	(0.32,0.35]	chr20	744599	1	SS3_PROX	SS3_PROX:INTRON	GPCPD1	ENSG00000125772.14	ENST00000379019.7:ENST00000481690.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	71	2	1.69015	3.293915	4.89768	0.0159619	0.00793135	0.109464	0.076155
chr1	23039314	23039414	43957	0	+	0.3	(0.28,0.32]	chr1	5258	83	INTRON	INTRON	KDM1A	ENSG00000004487.18	ENST00000692214.1:ENST00000686934.1:ENST00000689853.1:ENST00000465864.2:ENST00000691256.1:ENST00000688122.1:ENST00000692056.1:ENST00000692853.1:ENST00000689366.1:ENST00000686270.1:ENST00000685102.1:ENST00000690627.1:ENST00000686771.1:ENST00000692209.1:ENST00000686339.1:ENST00000691813.1:ENST00000693156.1:ENST00000688235.1:ENST00000692975.1:ENST00000687202.1:ENST00000691682.1:ENST00000691404.1:ENST00000691694.1:ENST00000688680.1:ENST00000356634.7:ENST00000400181.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	85	2	1.38319	3.293895	5.2046	0.0336194	0.00448664	0.146709	0.0593175
chr1	156139200	156139295	230688	0	+	0.273684	[0,0.28]	chr1	27225	2	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	LMNA	ENSG00000160789.24	ENST00000675939.1:ENST00000675667.1:ENST00000674518.1:ENST00000676208.1:ENST00000674600.1:ENST00000675874.1:ENST00000684195.1:ENST00000683032.1:ENST00000682650.1:ENST00000361308.9:ENST00000368300.9:ENST00000675881.1:ENST00000675455.1:ENST00000368299.7:ENST00000448611.6:ENST00000473598.6:ENST00000683773.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	85	2	2.86008	3.293895	3.72771	0.0177015	5.87492e-4	0.105304	0.0220073
chr14	31011648	31011748	5857726	0	-	0.3	(0.28,0.32]	chr14	556508	473	INTRON	INTRON	STRN3	ENSG00000196792.12	ENST00000355683.9:ENST00000357479.10:ENST00000555358.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	66	2	1.59898	3.29385	4.98872	0.030453	0.00838468	0.143385	0.0774402
chr6	43770183	43770210	2872057	0	+	0.592593	(0.57,1]	chr6	272339	1	EXON_MRNA	EXON_MRNA	VEGFA	ENSG00000112715.26	ENST00000476772.5	protein_coding	retained_intron	protein_coding	retained_intron	3	47	2	2.99729	3.2938099999999997	3.59033	0.00538023	1.72589e-5	0.0642754	0.00315885
chr16	81670835	81670925	6407274	0	+	0.577778	(0.57,1]	chr16	615087	2	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5:ENST00000398040.8	protein_coding	protein_coding	protein_coding	protein_coding	2	24	2	2.02391	3.29378	4.56365	0.0339274	0.00129848	0.134508	0.0333764
chr6	69777402	69777502	3136404	0	-	0.45	(0.44,0.476]	chr6	292289	215	INTRON	INTRON	LMBRD1	ENSG00000168216.13	ENST00000649934.3:ENST00000647655.1:ENST00000648265.1:ENST00000649679.1:ENST00000649673.1:ENST00000649057.1:ENST00000370570.6:ENST00000648168.1:ENST00000649370.1:ENST00000647934.1:ENST00000649918.1:ENST00000649744.1:ENST00000650124.1:ENST00000648210.1:ENST00000648303.1:ENST00000649011.1:ENST00000472827.2:ENST00000648635.1:ENST00000647650.1:ENST00000649028.1:ENST00000649958.1:ENST00000649166.1:ENST00000650107.1:ENST00000647964.1:ENST00000648394.1:ENST00000648743.1:ENST00000650035.1:ENST00000649054.1:ENST00000650043.1:ENST00000649795.1:ENST00000649970.1:ENST00000647669.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	59	2	3.17572	3.29374	3.41176	0.00427037	0.00130987	0.0573912	0.0333932
chr12	48697149	48697247	5319369	0	-	0.346939	(0.32,0.35]	chr12	506397	6	INTRON	INTRON	CCNT1	ENSG00000129315.11	ENST00000618666.4:ENST00000261900.8:ENST00000417344.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	29	2	2.31405	3.293525	4.273	0.0517107	0.0368357	0.176696	0.138959
chr14	101886623	101886722	5819766	0	+	0.333333	(0.32,0.35]	chr14	551895	27	INTRON	INTRON	PPP2R5C	ENSG00000078304.20	ENST00000694906.1:ENST00000422945.6:ENST00000328724.9:ENST00000350249.7:ENST00000557621.5:ENST00000334743.9:ENST00000445439.7:ENST00000557095.5:ENST00000554137.5:ENST00000556218.5:ENST00000557534.1:ENST00000557716.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	29	2	2.31405	3.293525	4.273	0.0517107	0.0368357	0.176696	0.138959
chr16	3132556	3132652	6433238	0	-	0.333333	(0.32,0.35]	chr16	619150	13	EXON_LNCRNA	EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ZNF213-AS1	ENSG00000263072.9	ENST00000674022.1:ENST00000673666.1:ENST00000572691.2:ENST00000664624.1:ENST00000670666.1:ENST00000653667.1:ENST00000668823.1:ENST00000657201.1:ENST00000657996.1:ENST00000576490.2:ENST00000692817.1:ENST00000668778.1:ENST00000654387.1:ENST00000686529.1:ENST00000659227.1:ENST00000691772.1:ENST00000685085.1:ENST00000686892.1:ENST00000654482.1:ENST00000571963.5:ENST00000573447.2:ENST00000571449.2:ENST00000652946.1:ENST00000658602.1:ENST00000653148.1:ENST00000671396.1:ENST00000576590.2:ENST00000575089.2	lncRNA	lncRNA	lncRNA	lncRNA	1	29	2	2.31405	3.293525	4.273	0.0517107	0.0368357	0.176696	0.138959
chr20	59034712	59034810	7359630	0	-	0.326531	(0.32,0.35]	chr20	750565	17	UTR3	UTR3:EXON_MRNA	PRELID3B	ENSG00000101166.16	ENST00000355937.9:ENST00000371033.9	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	2.31405	3.293525	4.273	0.0517107	0.0368357	0.176696	0.138959
chr3	168084951	168085051	1854830	0	-	0.35	(0.32,0.35]	chr3	186419	362	INTRON	INTRON	GOLIM4	ENSG00000173905.9	ENST00000470487.6:ENST00000309027.4	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	2.31405	3.293525	4.273	0.0517107	0.0368357	0.176696	0.138959
chr4	39889252	39889351	2131298	0	-	0.343434	(0.32,0.35]	chr4	210152	91	INTRON	INTRON	PDS5A	ENSG00000121892.15	ENST00000303538.13	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	2.31405	3.293525	4.273	0.0517107	0.0368357	0.176696	0.138959
chr9	100187833	100187933	4177624	0	+	0.33	(0.32,0.35]	chr9	380840	555	INTRON	INTRON	INVS	ENSG00000119509.13	ENST00000262457.7:ENST00000496467.5:ENST00000262456.6:ENST00000466647.5:ENST00000460636.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	29	2	2.31405	3.293525	4.273	0.0517107	0.0368357	0.176696	0.138959
chr22	21852427	21852527	7561234	0	-	0.41	(0.408,0.44]	chr22	773388	442	INTRON	INTRON	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	4	95	2	2.79763	3.2935	3.78937	5.76635e-4	3.51772e-4	0.0218153	0.0174637
chr1	151887175	151887274	555428	0	-	0.525253	(0.515,0.57]	chr1	65696	97	INTRON	INTRON	THEM4	ENSG00000159445.13	ENST00000368814.8:ENST00000471464.5:ENST00000483207.5:ENST00000477437.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	27	2	2.68833	3.293445	3.89856	0.0280943	0.0184931	0.137011	0.108861
chr10	30311948	30312045	4587264	0	-	0.536082	(0.515,0.57]	chr10	422944	23	UTR3	UTR3:EXON_MRNA	MTPAP	ENSG00000107951.15	ENST00000263063.9	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	2.68833	3.293445	3.89856	0.0280943	0.0184931	0.137011	0.108861
chr12	104122925	104123025	5402138	0	-	0.53	(0.515,0.57]	chr12	515346	3	SS5_PROX	SS5_PROX:INTRON	NFYB	ENSG00000120837.8	ENST00000240055.8:ENST00000551446.6:ENST00000551727.5:ENST00000550189.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	27	2	2.68833	3.293445	3.89856	0.0280943	0.0184931	0.137011	0.108861
chr5	134001892	134001992	2726036	0	-	0.52	(0.515,0.57]	chr5	256466	85	INTRON	INTRON	VDAC1	ENSG00000213585.11	ENST00000265333.8:ENST00000395044.7:ENST00000395047.6:ENST00000425992.2:ENST00000466080.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	27	2	2.68833	3.293445	3.89856	0.0280943	0.0184931	0.137011	0.108861
chr11	73740797	73740897	4985590	0	-	0.52	(0.515,0.57]	chr11	470892	96	INTRON	INTRON	RAB6A	ENSG00000175582.20	ENST00000310653.10:ENST00000336083.8:ENST00000541973.5:ENST00000536566.5:ENST00000541588.5:ENST00000545625.5:ENST00000540771.5:ENST00000537446.5:ENST00000400470.3:ENST00000541795.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	39	2	1.7492	3.2934200000000002	4.83764	0.0382504	0.00279527	0.15832	0.0469265
chr4	39723444	39723543	1953245	0	+	0.565657	(0.515,0.57]	chr4	195630	247	INTRON	INTRON	UBE2K	ENSG00000078140.14	ENST00000510934.5:ENST00000261427.10:ENST00000438068.6:ENST00000513231.5:ENST00000503368.5:ENST00000445950.2:ENST00000510719.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	39	2	1.7492	3.2934200000000002	4.83764	0.0382504	0.00279527	0.15832	0.0469265
chr9	120576627	120576727	4333862	0	-	0.53	(0.515,0.57]	chr9	398171	42	INTRON	INTRON	CDK5RAP2	ENSG00000136861.19	ENST00000349780.9:ENST00000360190.8:ENST00000687279.1:ENST00000687633.1:ENST00000690814.1:ENST00000693714.1:ENST00000693386.1:ENST00000686376.1:ENST00000692155.1:ENST00000690646.1:ENST00000693433.1:ENST00000473282.6:ENST00000480112.5:ENST00000685866.1:ENST00000689688.1:ENST00000416449.6:ENST00000691504.1:ENST00000360822.8:ENST00000693728.1:ENST00000690474.1:ENST00000693137.1:ENST00000481266.2:ENST00000472883.2:ENST00000491334.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	39	2	1.7492	3.2934200000000002	4.83764	0.0382504	0.00279527	0.15832	0.0469265
chr1	154227459	154227559	227594	0	+	0.28	[0,0.28]	chr1	26242	1	SS5_PROX	SS5_PROX:INTRON	UBAP2L	ENSG00000143569.19	ENST00000343815.10:ENST00000271877.11:ENST00000613315.4:ENST00000441890.5:ENST00000412596.5:ENST00000368504.5:ENST00000428931.6:ENST00000437652.5:ENST00000456325.5:ENST00000361546.6	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	2.29142	3.2933899999999996	4.29536	0.0592143	0.0590175	0.189982	0.167915
chr12	131760401	131760500	5249593	0	+	0.262626	[0,0.28]	chr12	499197	34	INTRON	INTRON	SFSWAP	ENSG00000061936.10	ENST00000261674.9:ENST00000538548.5:ENST00000535236.5:ENST00000541286.5:ENST00000537164.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	33	2	2.29142	3.2933899999999996	4.29536	0.0592143	0.0590175	0.189982	0.167915
chr17	27501229	27501329	6581215	0	+	0.22	[0,0.28]	chr17	639666	170	INTRON	INTRON	KSR1	ENSG00000141068.15	ENST00000644974.2:ENST00000583370.5:ENST00000398988.7:ENST00000268763.10:ENST00000509603.6:ENST00000582311.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	33	2	2.29142	3.2933899999999996	4.29536	0.0592143	0.0590175	0.189982	0.167915
chr2	131298367	131298446	866370	0	+	0.253165	[0,0.28]	chr2	97315	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PLEKHB2:FAR2P4	ENSG00000115762.17:ENSG00000231431.7	ENST00000404460.5:ENST00000560285.5:ENST00000425399.1	protein_coding	protein_coding	protein_coding:transcribed_unprocessed_pseudogene	protein_coding:processed_transcript:transcribed_unprocessed_pseudogene	1	33	2	2.29142	3.2933899999999996	4.29536	0.0592143	0.0590175	0.189982	0.167915
chr2	235598820	235598920	1042385	0	+	0.2	[0,0.28]	chr2	111222	739	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1:ENST00000402604.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	33	2	2.29142	3.2933899999999996	4.29536	0.0592143	0.0590175	0.189982	0.167915
chr4	47871351	47871451	2134875	0	-	0.27	[0,0.28]	chr4	210399	81	INTRON	INTRON	NFXL1	ENSG00000170448.12	ENST00000329043.7:ENST00000464756.6:ENST00000381538.7:ENST00000507489.2:ENST00000502448.5:ENST00000507131.5:ENST00000508115.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	33	2	2.29142	3.2933899999999996	4.29536	0.0592143	0.0590175	0.189982	0.167915
chr7	17832097	17832194	3495460	0	-	0.268041	[0,0.28]	chr7	326416	17	INTRON	INTRON	SNX13	ENSG00000071189.21	ENST00000428135.7:ENST00000611725.4:ENST00000409076.6:ENST00000444712.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	33	2	2.29142	3.2933899999999996	4.29536	0.0592143	0.0590175	0.189982	0.167915
chr7	107084189	107084289	3377562	0	+	0.26	[0,0.28]	chr7	316248	135	INTRON	INTRON	PRKAR2B	ENSG00000005249.13	ENST00000265717.5:ENST00000393613.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	33	2	2.29142	3.2933899999999996	4.29536	0.0592143	0.0590175	0.189982	0.167915
chr1	207342175	207342274	303481	0	+	0.333333	(0.32,0.35]	chr1	34926	12	INTRON	INTRON	CD55	ENSG00000196352.18	ENST00000695822.1:ENST00000695823.1:ENST00000695826.1:ENST00000695825.1:ENST00000695827.1:ENST00000645323.1:ENST00000391921.9:ENST00000367064.9:ENST00000314754.12:ENST00000644836.1:ENST00000476590.1:ENST00000465534.5:ENST00000618707.2:ENST00000635614.2:ENST00000695831.1:ENST00000634386.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	29	2	2.21917	3.29336	4.36755	0.0641245	0.0300552	0.199279	0.129138
chr10	60054785	60054878	4624176	0	-	0.322581	(0.32,0.35]	chr10	425715	7	INTRON	INTRON	ANK3	ENSG00000151150.22	ENST00000280772.7:ENST00000373827.6:ENST00000373820.5:ENST00000355288.6:ENST00000502769.5:ENST00000612776.4:ENST00000503366.5:ENST00000616444.4:ENST00000617800.4:ENST00000610321.4	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	2.21917	3.29336	4.36755	0.0641245	0.0300552	0.199279	0.129138
chr11	72054420	72054519	4976575	0	-	0.323232	(0.32,0.35]	chr11	470130	32	INTRON	INTRON	NUMA1	ENSG00000137497.19	ENST00000393695.8:ENST00000358965.10:ENST00000351960.10:ENST00000613205.4:ENST00000537217.5:ENST00000540843.5:ENST00000534987.5:ENST00000543937.5:ENST00000535087.5:ENST00000368959.9:ENST00000541719.5:ENST00000366394.7:ENST00000541641.5:ENST00000537905.5:ENST00000535111.5:ENST00000535838.5:ENST00000546131.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	29	2	2.21917	3.29336	4.36755	0.0641245	0.0300552	0.199279	0.129138
chr11	87294185	87294284	4845380	0	+	0.333333	(0.32,0.35]	chr11	451872	169	INTRON	INTRON	TMEM135	ENSG00000166575.17	ENST00000340353.11:ENST00000305494.6:ENST00000532959.5	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	2.21917	3.29336	4.36755	0.0641245	0.0300552	0.199279	0.129138
chr12	91596831	91596931	5385185	0	-	0.33	(0.32,0.35]	chr12	513485	896	INTRON	INTRON	ENSG00000289605	ENSG00000289605.1	ENST00000685093.1	lncRNA	lncRNA	lncRNA	lncRNA	1	29	2	2.21917	3.29336	4.36755	0.0641245	0.0300552	0.199279	0.129138
chr15	37067534	37067634	6143735	0	-	0.35	(0.32,0.35]	chr15	584838	6	INTRON	INTRON	MEIS2	ENSG00000134138.20	ENST00000338564.9:ENST00000561208.6:ENST00000397624.7:ENST00000340545.9:ENST00000314177.12:ENST00000560570.5:ENST00000559085.5:ENST00000557796.6:ENST00000397620.6:ENST00000424352.6:ENST00000559561.5:ENST00000607277.5:ENST00000561163.5:ENST00000606653.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	29	2	2.21917	3.29336	4.36755	0.0641245	0.0300552	0.199279	0.129138
chr19	28697968	28698067	7168077	0	-	0.323232	(0.32,0.35]	chr19	724207	98	INTRON	INTRON	ENSG00000283403:ENSG00000283269	ENSG00000283403.1:ENSG00000283269.1	ENST00000592347.5:ENST00000636857.1	lncRNA	lncRNA	lncRNA:transcribed_unprocessed_pseudogene	lncRNA:transcribed_unprocessed_pseudogene	1	29	2	2.21917	3.29336	4.36755	0.0641245	0.0300552	0.199279	0.129138
chr2	44486258	44486358	766584	0	+	0.33	(0.32,0.35]	chr2	86780	291	INTRON	INTRON	CAMKMT	ENSG00000143919.15	ENST00000378494.8:ENST00000402247.5:ENST00000407131.5:ENST00000428993.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	29	2	2.21917	3.29336	4.36755	0.0641245	0.0300552	0.199279	0.129138
chr3	12656555	12656654	1617357	0	-	0.343434	(0.32,0.35]	chr3	166996	71	INTRON	INTRON	RAF1	ENSG00000132155.14	ENST00000688543.1:ENST00000685348.1:ENST00000251849.9:ENST00000442415.7:ENST00000688444.1:ENST00000692093.1:ENST00000691724.1:ENST00000423275.6:ENST00000687326.1:ENST00000688803.1:ENST00000689876.1:ENST00000686455.1:ENST00000684903.1:ENST00000693312.1:ENST00000690460.1:ENST00000692773.1:ENST00000688625.1:ENST00000693664.1:ENST00000686762.1:ENST00000692311.1:ENST00000692558.1:ENST00000691779.1:ENST00000685738.1:ENST00000690397.1:ENST00000687923.1:ENST00000688269.1:ENST00000693705.1:ENST00000689097.1:ENST00000691899.1:ENST00000689914.1:ENST00000690625.1:ENST00000689389.1:ENST00000687257.1:ENST00000686409.1:ENST00000685653.1:ENST00000689540.1:ENST00000691396.1:ENST00000685437.1:ENST00000689418.1:ENST00000687940.1:ENST00000689481.1:ENST00000491290.2:ENST00000686479.1:ENST00000689033.1:ENST00000692777.1:ENST00000689226.1:ENST00000691718.1:ENST00000692959.1:ENST00000685740.1:ENST00000688753.1:ENST00000688779.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	29	2	2.21917	3.29336	4.36755	0.0641245	0.0300552	0.199279	0.129138
chr4	123113587	123113687	2037550	0	+	0.35	(0.32,0.35]	chr4	202384	114	INTRON	INTRON	SPATA5	ENSG00000145375.9	ENST00000675612.1:ENST00000274008.5	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	2.21917	3.29336	4.36755	0.0641245	0.0300552	0.199279	0.129138
chr5	28896123	28896223	2330711	0	+	0.34	(0.32,0.35]	chr5	225135	856	INTRON	INTRON	LINC02109	ENSG00000259786.7	ENST00000658190.1	lncRNA	lncRNA	lncRNA	lncRNA	1	29	2	2.21917	3.29336	4.36755	0.0641245	0.0300552	0.199279	0.129138
chr22	20614035	20614135	7557657	0	-	0.52	(0.515,0.57]	chr22	772875	3	SS3_PROX	SS3_PROX:INTRON	SMPD4P1	ENSG00000223553.6	ENST00000416717.6	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	3	39	2	1.67758	3.2933499999999998	4.90912	0.0471728	0.0021669	0.168737	0.0417866
chr16	47516200	47516300	6343854	0	+	0.41	(0.408,0.44]	chr16	608879	2	INTRON	INTRON	PHKB	ENSG00000102893.17	ENST00000566037.6:ENST00000566044.5:ENST00000299167.12:ENST00000696809.1:ENST00000323584.10:ENST00000565424.2:ENST00000567402.5:ENST00000570047.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	56	2	1.62843	3.2933	4.95817	0.025242	0.00372419	0.133676	0.0535094
chr17	30389724	30389824	6588218	0	+	0.34	(0.32,0.35]	chr17	640647	41	INTRON	INTRON	CPD	ENSG00000108582.12	ENST00000225719.9:ENST00000543464.6	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	2.64129	3.29329	3.94529	0.0693433	0.0222819	0.184298	0.124303
chr18	3608465	3608560	6867447	0	+	0.326316	(0.32,0.35]	chr18	680393	1	INTRON	INTRON	DLGAP1-AS2	ENSG00000262001.2	ENST00000692104.1:ENST00000687483.1:ENST00000693339.1:ENST00000691824.1	lncRNA	lncRNA	lncRNA	lncRNA	1	30	2	2.64129	3.29329	3.94529	0.0693433	0.0222819	0.184298	0.124303
chr21	39205707	39205807	7464422	0	-	0.42	(0.408,0.44]	chr21	760380	2	SS5_PROX	SS5_PROX:INTRON	BRWD1	ENSG00000185658.14	ENST00000333229.6:ENST00000342449.8:ENST00000446924.5:ENST00000380800.7:ENST00000424441.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	80	2	2.79124	3.29329	3.79534	0.00276922	2.17043e-4	0.0469265	0.0129235
chr5	57256805	57256904	2358897	0	+	0.323232	(0.32,0.35]	chr5	227620	53	INTRON	INTRON	GPBP1	ENSG00000062194.16	ENST00000424459.7:ENST00000514387.6:ENST00000506184.7:ENST00000511209.5:ENST00000264779.6:ENST00000515484.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	30	2	2.64129	3.29329	3.94529	0.0693433	0.0222819	0.184298	0.124303
chr6	37386946	37387045	2856420	0	+	0.343434	(0.32,0.35]	chr6	270073	52	INTRON	INTRON	RNF8	ENSG00000112130.17	ENST00000373479.9:ENST00000229866.10:ENST00000469731.5:ENST00000498460.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	30	2	2.64129	3.29329	3.94529	0.0693433	0.0222819	0.184298	0.124303
chr6	161110214	161110314	3025714	0	+	0.33	(0.32,0.35]	chr6	282451	3	SS5_PROX	SS5_PROX:INTRON	MAP3K4	ENSG00000085511.20	ENST00000366919.6:ENST00000392142.9:ENST00000366920.6:ENST00000348824.11:ENST00000544041.5:ENST00000490904.6:ENST00000536852.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	30	2	2.64129	3.29329	3.94529	0.0693433	0.0222819	0.184298	0.124303
chr11	66751097	66751196	4811406	0	+	0.515152	(0.476,0.515]	chr11	447936	22	INTRON	INTRON	C11orf80	ENSG00000173715.18	ENST00000534325.5:ENST00000524551.5:ENST00000525908.6:ENST00000540737.7:ENST00000527634.5:ENST00000527368.5:ENST00000531400.6:ENST00000642265.1:ENST00000532565.6:ENST00000525449.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	27	2	2.56868	3.2932249999999996	4.01777	0.0411361	0.0256676	0.1451	0.133676
chr11	73846670	73846769	4825766	0	+	0.515152	(0.476,0.515]	chr11	450340	13	INTRON	INTRON	MRPL48	ENSG00000175581.14	ENST00000508278.6:ENST00000310614.12:ENST00000540162.5:ENST00000544140.5:ENST00000544819.5:ENST00000411840.6:ENST00000398483.7:ENST00000542303.5:ENST00000543058.1:ENST00000314282.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	27	2	2.56868	3.2932249999999996	4.01777	0.0411361	0.0256676	0.1451	0.133676
chr16	88590703	88590802	6418467	0	+	0.515152	(0.476,0.515]	chr16	615804	27	INTRON	INTRON	ZC3H18	ENSG00000158545.16	ENST00000301011.10:ENST00000452588.6:ENST00000569435.5:ENST00000567085.1	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	2.56868	3.2932249999999996	4.01777	0.0411361	0.0256676	0.1451	0.133676
chr17	49718633	49718722	6793693	0	-	0.494382	(0.476,0.515]	chr17	670393	2	INTRON	INTRON	FAM117A	ENSG00000121104.8	ENST00000240364.7:ENST00000513602.5:ENST00000503573.5:ENST00000511743.5:ENST00000503855.5:ENST00000514018.5:ENST00000505159.5:ENST00000506156.1:ENST00000515240.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	27	2	2.56868	3.2932249999999996	4.01777	0.0411361	0.0256676	0.1451	0.133676
chr17	81625852	81625951	6849497	0	-	0.515152	(0.476,0.515]	chr17	678237	32	INTRON	INTRON	NPLOC4	ENSG00000182446.14	ENST00000331134.11:ENST00000374747.9:ENST00000574897.5:ENST00000625705.1:ENST00000570300.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	27	2	2.56868	3.2932249999999996	4.01777	0.0411361	0.0256676	0.1451	0.133676
chr21	15744217	15744317	7370237	0	+	0.48	(0.476,0.515]	chr21	752186	134	INTRON	INTRON	USP25	ENSG00000155313.16	ENST00000400183.7:ENST00000285681.6:ENST00000285679.10:ENST00000351097.9	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	2.56868	3.2932249999999996	4.01777	0.0411361	0.0256676	0.1451	0.133676
chr4	94564662	94564762	1999514	0	+	0.49	(0.476,0.515]	chr4	199564	148	INTRON	INTRON	PDLIM5	ENSG00000163110.15	ENST00000437932.5:ENST00000615540.4:ENST00000318007.9:ENST00000380180.7:ENST00000514830.5:ENST00000509333.5:ENST00000503974.5:ENST00000317968.9:ENST00000627587.2:ENST00000542407.5:ENST00000514743.5:ENST00000508216.5:ENST00000510099.5:ENST00000509357.5:ENST00000513341.5:ENST00000508531.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	27	2	2.56868	3.2932249999999996	4.01777	0.0411361	0.0256676	0.1451	0.133676
chr5	176946782	176946881	2776326	0	-	0.50505	(0.476,0.515]	chr5	261532	29	INTRON	INTRON	UIMC1	ENSG00000087206.17	ENST00000377227.8:ENST00000511320.6:ENST00000506128.5:ENST00000512031.5:ENST00000510698.2:ENST00000503273.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	27	2	2.56868	3.2932249999999996	4.01777	0.0411361	0.0256676	0.1451	0.133676
chr7	127676744	127676844	3402637	0	+	0.5	(0.476,0.515]	chr7	318063	239	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000463020.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	27	2	2.56868	3.2932249999999996	4.01777	0.0411361	0.0256676	0.1451	0.133676
chr17	58832800	58832900	6638413	0	+	0.5	(0.476,0.515]	chr17	648237	760	INTRON	INTRON	PPM1E	ENSG00000175175.6	ENST00000308249.4	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	2.48527	3.2932	4.10113	0.03496	0.0226984	0.13747500000000001	0.124921
chr22	50223563	50223659	7603574	0	-	0.479167	(0.476,0.515]	chr22	778785	7	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	TUBGCP6	ENSG00000128159.12	ENST00000498611.5:ENST00000439308.6:ENST00000248846.10:ENST00000491449.5:ENST00000489511.5:ENST00000473946.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	29	2	2.48527	3.2932	4.10113	0.03496	0.0226984	0.13747500000000001	0.124921
chr3	101402444	101402544	1757464	0	-	0.5	(0.476,0.515]	chr3	178317	30	INTRON	INTRON	SENP7	ENSG00000138468.16	ENST00000394095.7:ENST00000314261.11:ENST00000394094.6:ENST00000394091.5:ENST00000348610.3	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	2.48527	3.2932	4.10113	0.03496	0.0226984	0.13747500000000001	0.124921
chr7	100631596	100631696	3587237	0	-	0.5	(0.476,0.515]	chr7	334522	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TFR2	ENSG00000106327.13	ENST00000431692.5:ENST00000462107.1:ENST00000223051.8:ENST00000465294.5:ENST00000490084.5:ENST00000462090.5:ENST00000476304.5:ENST00000473374.5:ENST00000473963.1:ENST00000473571.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	29	2	2.48527	3.2932	4.10113	0.03496	0.0226984	0.13747500000000001	0.124921
chr8	30589157	30589257	3931527	0	-	0.51	(0.476,0.515]	chr8	360124	36	INTRON	INTRON	GTF2E2	ENSG00000197265.9	ENST00000355904.9:ENST00000522833.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	29	2	2.48527	3.2932	4.10113	0.03496	0.0226984	0.13747500000000001	0.124921
chr8	108482662	108482761	3847389	0	+	0.515152	(0.476,0.515]	chr8	354338	32	INTRON	INTRON	EMC2	ENSG00000104412.8	ENST00000220853.8:ENST00000519642.1:ENST00000520294.5:ENST00000519450.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	29	2	2.48527	3.2932	4.10113	0.03496	0.0226984	0.13747500000000001	0.124921
chr12	22633066	22633166	5094821	0	+	0.34	(0.32,0.35]	chr12	481224	70	INTRON	INTRON	ETNK1	ENSG00000139163.16	ENST00000671733.1:ENST00000335148.8:ENST00000672951.1:ENST00000266517.9:ENST00000538218.2:ENST00000673496.1:ENST00000673406.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	67	2	1.40199	3.29307	5.18415	0.0432025	0.00333629	0.162255	0.0512081
chr4	24539708	24539807	2118552	0	-	0.333333	(0.32,0.35]	chr4	209204	1	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	DHX15	ENSG00000109606.13	ENST00000336812.5:ENST00000503562.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	20	562	2	3.18692	3.293035	3.39915	5.23891e-6	1.29071e-7	0.00170345	1.62193e-4
chr8	99056040	99056140	3811687	0	+	0.43	(0.408,0.44]	chr8	353069	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	VPS13B	ENSG00000132549.20	ENST00000496144.5:ENST00000683334.1:ENST00000682853.1:ENST00000357162.7:ENST00000358544.7:ENST00000683619.1:ENST00000441350.2:ENST00000684269.1:ENST00000682806.1:ENST00000683869.1:ENST00000682153.1:ENST00000682358.1:ENST00000682145.1:ENST00000355155.6:ENST00000682234.1:ENST00000683486.1:ENST00000684308.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	47	2	1.58763	3.293	4.99837	0.0639217	0.00131369	0.177824	0.0333932
chr9	131161238	131161334	4215993	0	+	0.4375	(0.408,0.44]	chr9	386597	14	INTRON	INTRON	NUP214	ENSG00000126883.19	ENST00000695497.1:ENST00000695498.1:ENST00000695496.1:ENST00000695495.1:ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000525980.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	95	2	2.7371	3.292845	3.84859	7.83328e-4	2.66911e-4	0.0257505	0.0149989
chr1	21915983	21916082	397948	0	-	0.434343	(0.408,0.44]	chr1	47777	193	INTRON	INTRON	HSPG2	ENSG00000142798.20	ENST00000374695.8	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	2.58179	3.29282	4.00385	0.0454568	0.024638	0.149888	0.131869
chr12	106477891	106477990	5217000	0	+	0.424242	(0.408,0.44]	chr12	493792	139	INTRON	INTRON	POLR3B	ENSG00000013503.10	ENST00000228347.9:ENST00000539066.5	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	2.58179	3.29282	4.00385	0.0454568	0.024638	0.149888	0.131869
chr14	74003921	74004020	5921520	0	-	0.414141	(0.408,0.44]	chr14	562471	68	INTRON	INTRON	ENTPD5	ENSG00000187097.13	ENST00000557325.5:ENST00000334696.11:ENST00000556242.5:ENST00000554664.5:ENST00000556108.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	27	2	2.58179	3.29282	4.00385	0.0454568	0.024638	0.149888	0.131869
chr15	29817635	29817735	6125373	0	-	0.44	(0.408,0.44]	chr15	583580	166	INTRON	INTRON	TJP1	ENSG00000104067.17	ENST00000346128.10:ENST00000614355.5:ENST00000400011.6:ENST00000356107.11:ENST00000677774.1:ENST00000545208.6:ENST00000495972.6:ENST00000473741.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	27	2	2.58179	3.29282	4.00385	0.0454568	0.024638	0.149888	0.131869
chr3	58138827	58138926	1438756	0	+	0.434343	(0.408,0.44]	chr3	151986	4	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	FLNB	ENSG00000136068.16	ENST00000358537.7:ENST00000429972.6:ENST00000490882.5:ENST00000295956.9:ENST00000684506.1:ENST00000684607.1:ENST00000682871.1:ENST00000682868.1:ENST00000493452.5:ENST00000481470.5:ENST00000682297.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	27	2	2.58179	3.29282	4.00385	0.0454568	0.024638	0.149888	0.131869
chr5	77757707	77757807	2647048	0	-	0.42	(0.408,0.44]	chr5	251578	425	INTRON	INTRON	TBCA	ENSG00000171530.15	ENST00000380377.9:ENST00000306388.10:ENST00000520361.5:ENST00000651106.1:ENST00000518338.6:ENST00000522370.1:ENST00000520039.1	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	2.58179	3.29282	4.00385	0.0454568	0.024638	0.149888	0.131869
chr6	20428123	20428223	2827710	0	+	0.42	(0.408,0.44]	chr6	265575	239	INTRON	INTRON	E2F3	ENSG00000112242.16	ENST00000346618.8:ENST00000535432.2	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	2.58179	3.29282	4.00385	0.0454568	0.024638	0.149888	0.131869
chr6	26540247	26540347	2838160	0	+	0.41	(0.408,0.44]	chr6	266273	4	INTRON	INTRON	HMGN4	ENSG00000182952.5	ENST00000377575.3	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	2.58179	3.29282	4.00385	0.0454568	0.024638	0.149888	0.131869
chr7	92264507	92264607	3352977	0	+	0.41	(0.408,0.44]	chr7	312479	176	INTRON	INTRON	ANKIB1	ENSG00000001629.10	ENST00000265742.8	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	2.58179	3.29282	4.00385	0.0454568	0.024638	0.149888	0.131869
chr8	104578425	104578525	4014616	0	-	0.42	(0.408,0.44]	chr8	367439	461	INTRON	INTRON	LRP12	ENSG00000147650.12	ENST00000424843.6:ENST00000276654.10:ENST00000520770.1:ENST00000519675.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	27	2	2.58179	3.29282	4.00385	0.0454568	0.024638	0.149888	0.131869
chrX	134378702	134378798	7723552	0	+	0.302083	(0.28,0.32]	chrX	790091	2	INTRON	INTRON	PHF6	ENSG00000156531.18	ENST00000685047.1:ENST00000687496.1:ENST00000685553.1:ENST00000625464.2:ENST00000370803.8:ENST00000332070.7:ENST00000370799.5:ENST00000691812.1:ENST00000688598.1:ENST00000693759.1:ENST00000687834.1:ENST00000370800.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	122	2	3.09361	3.292795	3.49198	0.00195595	1.79432e-4	0.0400756	0.0116696
chr1	35299784	35299884	68599	0	+	0.46	(0.44,0.476]	chr1	8723	34	INTRON	INTRON	ZMYM4	ENSG00000146463.12	ENST00000314607.11:ENST00000441447.1	protein_coding	protein_coding	protein_coding	protein_coding	2	39	2	1.96602	3.29278	4.61954	0.0426807	0.00506805	0.148082	0.0646039
chr6	157413850	157413949	3011869	0	+	0.444444	(0.44,0.476]	chr6	281268	312	INTRON	INTRON	ZDHHC14	ENSG00000175048.17	ENST00000414563.6:ENST00000359775.10	protein_coding	protein_coding	protein_coding	protein_coding	2	39	2	1.96602	3.29278	4.61954	0.0426807	0.00506805	0.148082	0.0646039
chr17	47454124	47454222	6789437	0	-	0.540816	(0.515,0.57]	chr17	669651	29	INTRON	INTRON	MRPL45P2	ENSG00000228782.8	ENST00000425159.7	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	3	72	2	2.51561	3.2926849999999996	4.06976	0.00635044	5.5596e-5	0.0723103	0.00651834
chr1	1406350	1406443	359971	0	-	0.537634	(0.515,0.57]	chr1	41824	6	EXON_MRNA	EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MRPL20	ENSG00000242485.6	ENST00000344843.12:ENST00000487659.1:ENST00000492508.1:ENST00000482352.1:ENST00000477686.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	152	2	3.28156	3.2926349999999998	3.30371	2.52567e-5	1.19121e-5	0.00394111	0.00274108
chr1	148158253	148158350	213479	0	+	0.42268	(0.408,0.44]	chr1	23708	16	EXON_LNCRNA	EXON_LNCRNA:INTRON	LINC02805	ENSG00000232265.8	ENST00000663793.1:ENST00000665006.1:ENST00000657111.1:ENST00000668803.1	lncRNA	lncRNA	lncRNA	lncRNA	1	29	2	2.36073	3.2926	4.22447	0.0481658	0.0161655	0.153019	0.109464
chr1	227250168	227250268	651036	0	-	0.42	(0.408,0.44]	chr1	77102	304	INTRON	INTRON	CDC42BPA	ENSG00000143776.20	ENST00000366766.8:ENST00000366769.7:ENST00000334218.9:ENST00000366767.7:ENST00000366764.8:ENST00000478573.6:ENST00000682551.1:ENST00000462553.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	29	2	2.36073	3.2926	4.22447	0.0481658	0.0161655	0.153019	0.109464
chr2	199915468	199915568	977038	0	+	0.41	(0.408,0.44]	chr2	104955	33	INTRON	INTRON	C2orf69	ENSG00000178074.6	ENST00000319974.6:ENST00000491721.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	29	2	2.36073	3.2926	4.22447	0.0481658	0.0161655	0.153019	0.109464
chr22	19795330	19795430	7555025	0	-	0.44	(0.408,0.44]	chr22	772412	60	INTRON	INTRON	GNB1L	ENSG00000185838.14	ENST00000329517.11:ENST00000403325.5:ENST00000405009.5:ENST00000460402.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	29	2	2.36073	3.2926	4.22447	0.0481658	0.0161655	0.153019	0.109464
chr7	44631252	44631352	3314534	0	+	0.41	(0.408,0.44]	chr7	307897	63	INTRON	INTRON	OGDH	ENSG00000105953.16	ENST00000439616.6:ENST00000443864.6:ENST00000449767.5:ENST00000447398.5:ENST00000419661.5:ENST00000222673.6:ENST00000444676.5	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	2.36073	3.2926	4.22447	0.0481658	0.0161655	0.153019	0.109464
chr22	19835453	19835553	7555434	0	-	0.51	(0.476,0.515]	chr22	772443	137	INTRON	INTRON	GNB1L	ENSG00000185838.14	ENST00000329517.11:ENST00000403325.5:ENST00000405009.5:ENST00000460402.5:ENST00000481086.1:ENST00000453108.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	79	2	2.84068	3.2925050000000002	3.74433	0.00217133	2.85053e-4	0.0417893	0.0150568
chr16	23642586	23642678	6323246	0	+	0.478261	(0.476,0.515]	chr16	605582	1	UTR5	UTR5:EXON_MRNA:SS3_PROX:INTRON	DCTN5	ENSG00000166847.10	ENST00000300087.7:ENST00000563998.5:ENST00000566053.5:ENST00000568589.5:ENST00000563188.5:ENST00000568272.1:ENST00000566298.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	48	2	1.88582	3.2925	4.69918	0.0273268	0.00400966	0.123904	0.057767
chr11	58616215	58616315	4794124	0	+	0.32	(0.28,0.32]	chr11	443873	1	SS3_PROX	SS3_PROX:INTRON	ZFP91	ENSG00000186660.15	ENST00000316059.7	protein_coding	protein_coding	protein_coding	protein_coding	2	74	2	3.00395	3.292475	3.581	0.0101329	8.63544e-4	0.0850389	0.0266494
chr5	146481049	146481149	2515855	0	+	0.29	(0.28,0.32]	chr5	240357	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	TCERG1	ENSG00000113649.13	ENST00000296702.9:ENST00000679501.2:ENST00000394421.7:ENST00000549332.1:ENST00000515203.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	186	2	2.73368	3.29244	3.8512	7.86049e-4	1.38386e-5	0.0258544	0.00277484
chr19	40606864	40606945	7069561	0	+	0.506173	(0.476,0.515]	chr19	706316	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	LTBP4	ENSG00000090006.18	ENST00000204005.13:ENST00000308370.11:ENST00000598717.5:ENST00000396819.8:ENST00000595529.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	42	2	2.365	3.29232	4.21964	0.0167715	0.0128901	0.110511	0.0926667
chr21	43916821	43916921	7414309	0	+	0.51	(0.476,0.515]	chr21	755701	4	SS5_PROX	SS5_PROX:INTRON	AGPAT3	ENSG00000160216.21	ENST00000291572.13:ENST00000448287.5:ENST00000398061.5:ENST00000327505.6:ENST00000445582.5	protein_coding	protein_coding	protein_coding	protein_coding	2	42	2	2.365	3.29232	4.21964	0.0167715	0.0128901	0.110511	0.0926667
chr1	204528017	204528115	297534	0	+	0.244898	[0,0.28]	chr1	34273	12	INTRON	INTRON	MDM4	ENSG00000198625.14	ENST00000367183.7:ENST00000391947.6:ENST00000454264.6:ENST00000612738.4:ENST00000614459.4:ENST00000616250.4:ENST00000470797.5:ENST00000367182.8:ENST00000463049.5:ENST00000470908.5:ENST00000471783.1:ENST00000367180.5:ENST00000507825.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	47	2	2.20073	3.2923	4.38387	0.0501911	0.0235708	0.156383	0.128907
chr15	84990443	84990542	6089016	0	+	0.272727	[0,0.28]	chr15	579504	77	INTRON	INTRON	PDE8A	ENSG00000073417.15	ENST00000310298.8:ENST00000557957.5:ENST00000394553.6:ENST00000339708.9:ENST00000478717.5:ENST00000485596.5:ENST00000559742.5:ENST00000559086.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	47	2	2.20073	3.2923	4.38387	0.0501911	0.0235708	0.156383	0.128907
chr22	21818541	21818641	7560895	0	-	0.44	(0.408,0.44]	chr22	773388	103	INTRON	INTRON	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	6	121	2	2.57162	3.2922700000000003	4.01292	3.50541e-4	1.20325e-4	0.0166929	0.00992311
chr18	2667729	2667828	6864982	0	+	0.212121	[0,0.28]	chr18	679952	3	INTRON	INTRON	SMCHD1	ENSG00000101596.17	ENST00000320876.11:ENST00000688342.1:ENST00000684915.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	48	2	2.28885	3.292105	4.29536	0.0590175	0.0181093	0.167915	0.114853
chr16	89531335	89531430	6420585	0	+	0.368421	(0.35,0.378]	chr16	616246	5	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SPG7	ENSG00000197912.16	ENST00000647079.1:ENST00000646303.1:ENST00000643649.1:ENST00000643307.1:ENST00000644498.1:ENST00000645897.1:ENST00000643668.1:ENST00000644225.1:ENST00000645818.2:ENST00000645977.1:ENST00000645063.1:ENST00000646263.1:ENST00000643724.1:ENST00000644781.1:ENST00000644901.1:ENST00000645042.1:ENST00000646531.1:ENST00000646930.1:ENST00000642436.1:ENST00000644210.1:ENST00000564047.2:ENST00000646589.1:ENST00000268704.7:ENST00000646826.1:ENST00000646716.1:ENST00000643345.1:ENST00000341316.6:ENST00000645533.1:ENST00000646958.1:ENST00000642371.1:ENST00000643105.1:ENST00000645354.1:ENST00000642334.1:ENST00000647227.1:ENST00000646445.1:ENST00000564409.2:ENST00000643954.1:ENST00000646399.1:ENST00000644671.1:ENST00000643178.1:ENST00000644748.1:ENST00000643496.1:ENST00000647032.1:ENST00000644751.1:ENST00000642427.1:ENST00000643370.1:ENST00000645886.1:ENST00000646454.1:ENST00000561945.2:ENST00000644171.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	64	2	3.17244	3.291915	3.41139	0.00487788	0.00143263	0.0607461	0.0347139
chr1	1889663	1889763	362827	0	-	0.32	(0.28,0.32]	chr1	42311	496	INTRON	INTRON	GNB1	ENSG00000078369.18	ENST00000610897.4:ENST00000615252.4:ENST00000378609.9:ENST00000439272.6:ENST00000434686.6:ENST00000472614.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	100	2	2.68602	3.29189	3.89776	0.0055712	2.03846e-4	0.0649112	0.0124395
chr17	46189020	46189120	6784831	0	-	0.32	(0.28,0.32]	chr17	669245	164	INTRON	INTRON	KANSL1	ENSG00000120071.15	ENST00000574590.6:ENST00000572904.6:ENST00000432791.7:ENST00000575318.6:ENST00000638275.1:ENST00000262419.10:ENST00000648792.1:ENST00000639150.1:ENST00000571698.2:ENST00000639375.1:ENST00000638269.1:ENST00000639356.1:ENST00000574655.6:ENST00000639099.1:ENST00000638902.1:ENST00000576739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	57	2	1.68409	3.291855	4.89962	0.0548665	0.00425206	0.165463	0.0595557
chr3	98522423	98522514	1755003	0	-	0.318681	(0.28,0.32]	chr3	177976	9	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	CLDND1	ENSG00000080822.17	ENST00000502288.5:ENST00000507874.5:ENST00000394180.6:ENST00000394181.6:ENST00000394185.6:ENST00000341181.11:ENST00000503004.5:ENST00000510545.5:ENST00000511081.5:ENST00000513287.5:ENST00000511667.5:ENST00000513452.5:ENST00000502299.5:ENST00000508902.5:ENST00000512147.5:ENST00000510541.5:ENST00000508503.5:ENST00000514537.5:ENST00000507411.5:ENST00000515620.5:ENST00000507944.5:ENST00000508659.5:ENST00000503621.5:ENST00000503799.5:ENST00000508071.1:ENST00000513988.1:ENST00000502980.1:ENST00000506575.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	35	2	2.45545	3.29176	4.12807	0.0438092	0.0338135	0.14901	0.146709
chr5	7889567	7889663	2316894	0	+	0.3125	(0.28,0.32]	chr5	224449	3	SS5_PROX	SS5_PROX:INTRON	MTRR	ENSG00000124275.15	ENST00000264668.6:ENST00000513439.5:ENST00000511461.5:ENST00000440940.7:ENST00000510525.5:ENST00000508101.5:ENST00000509961.5:ENST00000512311.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	35	2	2.45545	3.29176	4.12807	0.0438092	0.0338135	0.14901	0.146709
chr1	22090226	22090324	42593	0	+	0.418367	(0.408,0.44]	chr1	5128	3	UTR3	UTR3:EXON_MRNA:INTRON	ENSG00000289694:CDC42	ENSG00000289694.1:ENSG00000070831.18	ENST00000695855.1:ENST00000695856.1:ENST00000344548.8:ENST00000400259.5:ENST00000667384.2:ENST00000411827.2:ENST00000695858.1:ENST00000695857.1:ENST00000315554.14:ENST00000695859.1:ENST00000656825.1:ENST00000695860.1:ENST00000695796.1:ENST00000695797.1:ENST00000662562.2:ENST00000695798.1:ENST00000695799.1:ENST00000695800.1:ENST00000695801.1:ENST00000695802.1:ENST00000695861.1:ENST00000695862.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	43	2	1.75791	3.291605	4.8253	0.0378795	0.0056738	0.157034	0.0653997
chr19	45851811	45851911	7193747	0	-	0.43	(0.408,0.44]	chr19	728643	1	SS5_PROX	SS5_PROX:INTRON	SYMPK	ENSG00000125755.19	ENST00000245934.12:ENST00000593504.5:ENST00000600237.5:ENST00000599460.5:ENST00000599814.5:ENST00000598896.5:ENST00000602061.5:ENST00000598059.5:ENST00000594293.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	43	2	1.75791	3.291605	4.8253	0.0378795	0.0056738	0.157034	0.0653997
chr3	139364492	139364591	1831895	0	-	0.414141	(0.408,0.44]	chr3	184098	21	EXON_MRNA	EXON_MRNA:INTRON	COPB2	ENSG00000184432.11	ENST00000503326.6:ENST00000677882.1:ENST00000677601.1:ENST00000677309.1:ENST00000677073.1:ENST00000512242.6:ENST00000507777.6:ENST00000514508.2:ENST00000333188.10:ENST00000510181.6:ENST00000512309.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	44	2	1.9831	3.291445	4.59979	0.018491	0.0109537	0.116694	0.0873034
chr7	152365171	152365270	3680585	0	-	0.434343	(0.408,0.44]	chr7	341660	61	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000682301.1:ENST00000452749.2:ENST00000680867.1:ENST00000683800.1:ENST00000684278.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	44	2	1.9831	3.291445	4.59979	0.018491	0.0109537	0.116694	0.0873034
chr7	22962519	22962618	3501508	0	-	0.424242	(0.408,0.44]	chr7	326753	8	INTRON	INTRON	FAM126A	ENSG00000122591.13	ENST00000465661.2:ENST00000432176.7:ENST00000440481.6:ENST00000679826.1:ENST00000681402.1:ENST00000681237.1:ENST00000680721.1:ENST00000679789.1:ENST00000409923.5:ENST00000681766.1:ENST00000681079.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	60	2	1.3378	3.291405	5.24501	0.050805	0.00137378	0.175989	0.0336718
chr11	129864328	129864427	5051548	0	-	0.50505	(0.476,0.515]	chr11	476647	8	UTR3	UTR3:EXON_MRNA	NFRKB	ENSG00000170322.15	ENST00000682444.1:ENST00000446488.7	protein_coding	protein_coding	protein_coding	protein_coding	3	43	2	1.74317	3.291395	4.83962	0.0396373	0.00480934	0.161534	0.0602209
chr2	113593180	113593280	854171	0	+	0.48	(0.476,0.515]	chr2	95858	41	INTRON	INTRON	WASH2P	ENSG00000146556.15	ENST00000686495.1:ENST00000692602.1:ENST00000688542.1:ENST00000685302.1:ENST00000685435.1:ENST00000685518.1:ENST00000691953.1:ENST00000453662.6	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	3	43	2	1.74317	3.291395	4.83962	0.0396373	0.00480934	0.161534	0.0602209
chr1	1861973	1862073	362550	0	-	0.58	(0.57,1]	chr1	42311	219	INTRON	INTRON	GNB1	ENSG00000078369.18	ENST00000610897.4:ENST00000615252.4:ENST00000378609.9:ENST00000439272.6:ENST00000434686.6:ENST00000472614.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	32	2	1.52818	3.291335	5.05449	0.0508101	1.79828e-4	0.175989	0.0121697
chr10	94608984	94609076	4500277	0	+	0.326087	(0.32,0.35]	chr10	414345	6	INTRON	INTRON	ENSG00000244332:HELLS	ENSG00000244332.1:ENSG00000119969.15	ENST00000432120.1:ENST00000371327.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	2	44	2	1.94202	3.29124	4.64046	0.0486128	0.00724767	0.153946	0.0756327
chr17	60385784	60385884	6805812	0	-	0.35	(0.32,0.35]	chr17	672366	398	INTRON	INTRON	USP32	ENSG00000170832.13	ENST00000300896.9:ENST00000590133.5:ENST00000589335.5:ENST00000393003.7:ENST00000588898.1:ENST00000589761.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	44	2	1.94202	3.29124	4.64046	0.0486128	0.00724767	0.153946	0.0756327
chr19	38659846	38659946	7065850	0	+	0.33	(0.32,0.35]	chr19	705486	112	INTRON	INTRON	ACTN4	ENSG00000130402.13	ENST00000252699.7:ENST00000588618.5:ENST00000440400.2:ENST00000424234.7:ENST00000589528.1:ENST00000390009.7:ENST00000495553.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	44	2	1.94202	3.29124	4.64046	0.0486128	0.00724767	0.153946	0.0756327
chr16	23907345	23907445	6324474	0	+	0.5	(0.476,0.515]	chr16	605701	136	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000498739.1	protein_coding	protein_coding	protein_coding	protein_coding	3	44	2	1.96833	3.291175	4.61402	0.0195007	0.00947755	0.119967	0.0817766
chr7	139104530	139104630	3656369	0	-	0.5	(0.476,0.515]	chr7	339450	144	INTRON	INTRON	ZC3HAV1	ENSG00000105939.14	ENST00000242351.10:ENST00000464606.5:ENST00000680309.1:ENST00000471652.1	protein_coding	protein_coding	protein_coding	protein_coding	3	44	2	1.96833	3.291175	4.61402	0.0195007	0.00947755	0.119967	0.0817766
chr10	22606130	22606230	4579410	0	-	0.47	(0.44,0.476]	chr10	422005	140	INTRON	INTRON	PIP4K2A	ENSG00000150867.14	ENST00000376573.9:ENST00000545335.5:ENST00000422321.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	54	2	1.5191	3.29099	5.06288	0.0526241	0.00102416	0.160983	0.0294041
chr1	225054985	225055085	323631	0	+	0.3	(0.28,0.32]	chr1	37216	28	INTRON	INTRON	DNAH14	ENSG00000185842.16	ENST00000445597.6:ENST00000430092.5:ENST00000682510.1:ENST00000439375.6	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	2.57195	3.290985	4.01002	0.0434868	0.0331711	0.162255	0.133994
chr2	231787499	231787592	1032779	0	+	0.301075	(0.28,0.32]	chr2	110314	6	INTRON	INTRON	COPS7B	ENSG00000144524.18	ENST00000611614.4:ENST00000410024.5:ENST00000409295.5:ENST00000409091.5:ENST00000449784.5:ENST00000452375.5:ENST00000479430.5:ENST00000466901.5:ENST00000620578.4:ENST00000413197.5:ENST00000412591.5:ENST00000450501.5:ENST00000432387.5:ENST00000357490.6:ENST00000350033.8:ENST00000412922.6:ENST00000410017.5:ENST00000492423.5:ENST00000373608.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	36	2	2.57195	3.290985	4.01002	0.0434868	0.0331711	0.162255	0.133994
chr5	146206318	146206418	2514141	0	+	0.34	(0.32,0.35]	chr5	240152	21	INTRON	INTRON	ENSG00000275740:RBM27	ENSG00000275740.1:ENSG00000091009.8	ENST00000506502.2:ENST00000265271.7	protein_coding	protein_coding	protein_coding	protein_coding	4	54	2	1.45026	3.2907450000000003	5.13123	0.0622478	0.00394704	0.194723	0.0548259
chr11	73704315	73704415	4985216	0	-	0.48	(0.476,0.515]	chr11	470858	1	SS3_PROX	SS3_PROX:INTRON	RAB6A	ENSG00000175582.20	ENST00000310653.10:ENST00000336083.8:ENST00000541973.5:ENST00000536566.5:ENST00000541588.5:ENST00000545625.5:ENST00000540771.5:ENST00000537446.5:ENST00000400470.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	97	2	3.12428	3.2906950000000004	3.45711	0.00140905	9.82343e-5	0.0340865	0.0083372
chr2	15503944	15504044	1072587	0	-	0.32	(0.28,0.32]	chr2	114430	4	SS5_PROX	SS5_PROX:INTRON	NBAS	ENSG00000151779.13	ENST00000281513.10:ENST00000427792.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	70	2	1.27925	3.29039	5.30153	0.0642509	0.00332518	0.19963	0.0512081
chr2	113897830	113897929	854321	0	+	0.363636	(0.35,0.378]	chr2	95895	67	INTRON	INTRON	ACTR3	ENSG00000115091.12	ENST00000443297.5:ENST00000263238.7:ENST00000415792.5:ENST00000446821.5:ENST00000535589.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	52	2	1.59505	3.29033	4.98561	0.040425	0.00474226	0.161534	0.0600445
chr21	46195275	46195375	7470525	0	-	0.48	(0.476,0.515]	chr21	761455	2	SS5_PROX	SS5_PROX:INTRON	LSS	ENSG00000160285.15	ENST00000356396.8:ENST00000397728.8:ENST00000457828.6:ENST00000522411.5	protein_coding	protein_coding	protein_coding	protein_coding	2	59	2	3.2463	3.29023	3.33416	0.00262374	0.00230489	0.0470772	0.0428247
chr19	48480374	48480471	7087708	0	+	0.618557	(0.57,1]	chr19	709311	13	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CYTH2	ENSG00000105443.16	ENST00000427476.4:ENST00000452733.7:ENST00000641098.1:ENST00000600597.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	43	2	2.95123	3.290165	3.6291	8.39007e-4	3.02868e-4	0.0263691	0.0160895
chr5	54020509	54020609	2618009	0	-	0.35	(0.32,0.35]	chr5	248835	1085	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	92	2	2.69421	3.290155	3.8861	0.00484681	1.80108e-4	0.0605691	0.0116696
chr7	132947935	132948035	3644542	0	-	0.31	(0.28,0.32]	chr7	338848	606	INTRON	INTRON	CHCHD3	ENSG00000106554.13	ENST00000262570.10:ENST00000448878.6:ENST00000496427.5:ENST00000423635.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	134	2	3.12375	3.2901	3.45645	0.00104535	1.23958e-4	0.0294493	0.00952291
chr13	114237296	114237396	5550440	0	+	0.45	(0.44,0.476]	chr13	530443	4	SS5_PROX	SS5_PROX:INTRON	CDC16	ENSG00000130177.16	ENST00000360383.7:ENST00000628084.2:ENST00000356221.8:ENST00000650489.1:ENST00000375310.5:ENST00000494766.5:ENST00000252457.9:ENST00000375308.5:ENST00000252458.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	49	2	1.43625	3.290015	5.14378	0.063142	0.00184943	0.197183	0.0388609
chr1	222723398	222723494	320016	0	+	0.40625	(0.378,0.408]	chr1	36799	5	INTRON	INTRON	BROX	ENSG00000162819.12	ENST00000612948.4:ENST00000340934.10:ENST00000537020.5:ENST00000539697.5:ENST00000426638.1:ENST00000473962.5:ENST00000489191.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	27	2	2.36428	3.289955	4.21563	0.0441088	0.0315429	0.162255	0.13151
chr16	89448999	89449098	6543186	0	-	0.383838	(0.378,0.408]	chr16	634281	173	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	27	2	2.36428	3.289955	4.21563	0.0441088	0.0315429	0.162255	0.13151
chr20	32388429	32388528	7256127	0	+	0.393939	(0.378,0.408]	chr20	737076	160	INTRON	INTRON	ASXL1	ENSG00000171456.21	ENST00000651418.1:ENST00000375687.10:ENST00000613218.4:ENST00000644587.1:ENST00000620121.4:ENST00000646985.1:ENST00000643168.1:ENST00000306058.9:ENST00000645688.1:ENST00000470145.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	27	2	2.36428	3.289955	4.21563	0.0441088	0.0315429	0.162255	0.13151
chr22	49778412	49778512	7602724	0	-	0.38	(0.378,0.408]	chr22	778623	2	INTRON	INTRON	BRD1	ENSG00000100425.19	ENST00000404760.6:ENST00000404034.5:ENST00000216267.12:ENST00000438393.5:ENST00000457780.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	27	2	2.36428	3.289955	4.21563	0.0441088	0.0315429	0.162255	0.13151
chr6	33262387	33262487	3082322	0	-	0.38	(0.378,0.408]	chr6	288175	101	INTRON	INTRON	VPS52	ENSG00000223501.9	ENST00000478934.5:ENST00000482399.5:ENST00000445902.3:ENST00000495981.5:ENST00000493674.5:ENST00000471309.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	27	2	2.36428	3.289955	4.21563	0.0441088	0.0315429	0.162255	0.13151
chr7	110873594	110873694	3617213	0	-	0.39	(0.378,0.408]	chr7	337078	1479	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000487733.5:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	27	2	2.36428	3.289955	4.21563	0.0441088	0.0315429	0.162255	0.13151
chr7	119809267	119809367	3629433	0	-	0.4	(0.378,0.408]	chr7	337335	80	INTRON	INTRON	LINC02476	ENSG00000225546.6	ENST00000660268.1:ENST00000431071.5:ENST00000426413.2	lncRNA	lncRNA	lncRNA	lncRNA	1	27	2	2.36428	3.289955	4.21563	0.0441088	0.0315429	0.162255	0.13151
chr9	2801361	2801461	4228126	0	-	0.4	(0.378,0.408]	chr9	388650	182	INTRON	INTRON	PUM3	ENSG00000080608.10	ENST00000490444.2	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	1	27	2	2.36428	3.289955	4.21563	0.0441088	0.0315429	0.162255	0.13151
chr9	132343889	132343988	4367055	0	-	0.393939	(0.378,0.408]	chr9	401494	7	INTRON	INTRON	SETX	ENSG00000107290.14	ENST00000224140.6	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	2.36428	3.289955	4.21563	0.0441088	0.0315429	0.162255	0.13151
chr4	126591999	126592099	2236629	0	-	0.4	(0.378,0.408]	chr4	219023	1265	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	8	73	2	1.40351	3.2898899999999998	5.17627	0.0284091	0.00208234	0.138375	0.0411801
chr16	46617849	46617934	6478084	0	-	0.376471	(0.35,0.378]	chr16	626606	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SHCBP1	ENSG00000171241.9	ENST00000303383.8:ENST00000566016.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	64	2	3.21456	3.28985	3.36514	0.00420814	0.00173699	0.0572185	0.03851
chr5	28908020	28908120	2330830	0	+	0.45	(0.44,0.476]	chr5	225135	975	INTRON	INTRON	LINC02109	ENSG00000259786.7	ENST00000658190.1	lncRNA	lncRNA	lncRNA	lncRNA	2	60	2	2.86231	3.28979	3.71727	0.012214	3.2089e-4	0.0910127	0.0159645
chr1	37507281	37507381	423985	0	-	0.38	(0.378,0.408]	chr1	51247	49	INTRON	INTRON	MEAF6	ENSG00000163875.16	ENST00000296214.10:ENST00000373075.6:ENST00000373074.5:ENST00000475828.5:ENST00000487788.5:ENST00000373073.8:ENST00000487792.5:ENST00000448519.2:ENST00000485039.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	27	2	2.26252	3.2897549999999995	4.31699	0.056222	0.0250408	0.18407	0.12011
chr10	50360227	50360327	4618047	0	-	0.38	(0.378,0.408]	chr10	425422	155	INTRON	INTRON	SGMS1	ENSG00000198964.14	ENST00000429490.5:ENST00000361781.7:ENST00000619438.4:ENST00000492601.2:ENST00000609445.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	27	2	2.26252	3.2897549999999995	4.31699	0.056222	0.0250408	0.18407	0.12011
chr10	68756877	68756962	4442641	0	+	0.388235	(0.378,0.408]	chr10	409667	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CCAR1	ENSG00000060339.14	ENST00000630771.2:ENST00000543719.5:ENST00000541012.5:ENST00000265872.11:ENST00000539539.5:ENST00000543229.5:ENST00000536012.5:ENST00000543225.5:ENST00000540210.5:ENST00000483264.1:ENST00000479143.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	27	2	2.26252	3.2897549999999995	4.31699	0.056222	0.0250408	0.18407	0.12011
chr12	94359810	94359909	5389094	0	-	0.393939	(0.378,0.408]	chr12	513815	238	INTRON	INTRON	CEP83	ENSG00000173588.16	ENST00000397809.10:ENST00000339839.9:ENST00000547232.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	27	2	2.26252	3.2897549999999995	4.31699	0.056222	0.0250408	0.18407	0.12011
chr13	100306891	100306991	5529735	0	+	0.38	(0.378,0.408]	chr13	528553	3	SS3_PROX	SS3_PROX:INTRON	PCCA	ENSG00000175198.17	ENST00000376286.8:ENST00000376279.7:ENST00000376285.6:ENST00000647303.1:ENST00000637657.1:ENST00000636366.1:ENST00000636475.1:ENST00000636420.1:ENST00000424527.5:ENST00000443601.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	27	2	2.26252	3.2897549999999995	4.31699	0.056222	0.0250408	0.18407	0.12011
chr16	8029723	8029823	6440806	0	-	0.38	(0.378,0.408]	chr16	620351	221	INTRON	INTRON	ENSG00000260289	ENSG00000260289.2	ENST00000670665.1:ENST00000654046.1:ENST00000567103.2	lncRNA	lncRNA	lncRNA	lncRNA	1	27	2	2.26252	3.2897549999999995	4.31699	0.056222	0.0250408	0.18407	0.12011
chr19	11008523	11008619	7016055	0	+	0.395833	(0.378,0.408]	chr19	697258	1	INTRON	INTRON	SMARCA4	ENSG00000127616.20	ENST00000644737.1:ENST00000642726.1:ENST00000646484.1:ENST00000643549.1:ENST00000643296.1:ENST00000647230.1:ENST00000642628.1:ENST00000646510.1:ENST00000429416.8:ENST00000344626.10:ENST00000646693.2:ENST00000645460.1:ENST00000541122.6:ENST00000589677.5:ENST00000444061.8:ENST00000590574.6:ENST00000591545.6:ENST00000643995.1:ENST00000644327.1:ENST00000644065.1:ENST00000644963.1:ENST00000643208.1:ENST00000645061.1:ENST00000642350.1:ENST00000644290.1:ENST00000647268.1:ENST00000643857.1:ENST00000644267.1:ENST00000646183.1:ENST00000646746.1:ENST00000643534.1:ENST00000646513.1:ENST00000646593.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	27	2	2.26252	3.2897549999999995	4.31699	0.056222	0.0250408	0.18407	0.12011
chr2	9853428	9853527	689172	0	+	0.393939	(0.378,0.408]	chr2	80843	14	INTRON	INTRON	TAF1B	ENSG00000115750.17	ENST00000263663.10:ENST00000402170.5:ENST00000434858.5:ENST00000469895.5:ENST00000480197.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	27	2	2.26252	3.2897549999999995	4.31699	0.056222	0.0250408	0.18407	0.12011
chr2	15353710	15353810	1071056	0	-	0.38	(0.378,0.408]	chr2	114289	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	NBAS	ENSG00000151779.13	ENST00000281513.10:ENST00000442506.5	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	2.26252	3.2897549999999995	4.31699	0.056222	0.0250408	0.18407	0.12011
chr2	61291269	61291369	1128719	0	-	0.38	(0.378,0.408]	chr2	121324	20	INTRON	INTRON	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000472706.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	27	2	2.26252	3.2897549999999995	4.31699	0.056222	0.0250408	0.18407	0.12011
chr2	61336461	61336560	1129188	0	-	0.383838	(0.378,0.408]	chr2	121404	21	INTRON	INTRON	USP34	ENSG00000115464.15	ENST00000398571.7	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	2.26252	3.2897549999999995	4.31699	0.056222	0.0250408	0.18407	0.12011
chr2	178513368	178513468	930879	0	+	0.38	(0.378,0.408]	chr2	102252	96	UTR3	UTR3:EXON_MRNA	PLEKHA3	ENSG00000116095.11	ENST00000234453.10	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	2.26252	3.2897549999999995	4.31699	0.056222	0.0250408	0.18407	0.12011
chr22	31741207	31741307	7579595	0	-	0.39	(0.378,0.408]	chr22	775674	19	INTRON	INTRON	PRR14L	ENSG00000183530.14	ENST00000327423.11:ENST00000461722.1:ENST00000412743.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	27	2	2.26252	3.2897549999999995	4.31699	0.056222	0.0250408	0.18407	0.12011
chr3	10262862	10262961	1364192	0	+	0.393939	(0.378,0.408]	chr3	143776	18	INTRON	INTRON	TATDN2	ENSG00000157014.11	ENST00000287652.8:ENST00000448281.7	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	2.26252	3.2897549999999995	4.31699	0.056222	0.0250408	0.18407	0.12011
chr3	128646176	128646275	1813966	0	-	0.383838	(0.378,0.408]	chr3	182332	8	INTRON	INTRON	RPN1	ENSG00000163902.12	ENST00000296255.8:ENST00000497289.5:ENST00000495462.5:ENST00000476931.1:ENST00000497415.1:ENST00000481168.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	27	2	2.26252	3.2897549999999995	4.31699	0.056222	0.0250408	0.18407	0.12011
chr5	129102957	129103057	2483750	0	+	0.4	(0.378,0.408]	chr5	237039	48	INTRON	INTRON	ISOC1	ENSG00000066583.12	ENST00000173527.6:ENST00000514194.5	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	2.26252	3.2897549999999995	4.31699	0.056222	0.0250408	0.18407	0.12011
chr6	72698642	72698742	2898470	0	+	0.38	(0.378,0.408]	chr6	274190	202	INTRON	INTRON	KCNQ5	ENSG00000185760.18	ENST00000342056.6:ENST00000628967.2:ENST00000692515.1:ENST00000370398.6:ENST00000370392.5:ENST00000629977.2:ENST00000355194.9	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	27	2	2.26252	3.2897549999999995	4.31699	0.056222	0.0250408	0.18407	0.12011
chr6	149333286	149333386	2994868	0	+	0.4	(0.378,0.408]	chr6	280212	115	INTRON	INTRON	TAB2	ENSG00000055208.19	ENST00000606202.1:ENST00000636456.1:ENST00000637181.2:ENST00000461481.5:ENST00000367456.5:ENST00000606797.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	27	2	2.26252	3.2897549999999995	4.31699	0.056222	0.0250408	0.18407	0.12011
chr6	157158280	157158379	3010993	0	+	0.393939	(0.378,0.408]	chr6	281189	41	INTRON	INTRON	ARID1B	ENSG00000049618.24	ENST00000346085.10:ENST00000636930.2:ENST00000647938.1:ENST00000350026.10:ENST00000414678.7:ENST00000319584.11:ENST00000635849.1:ENST00000637904.1:ENST00000637810.1:ENST00000637015.1:ENST00000636426.1:ENST00000637568.1:ENST00000635957.1:ENST00000400790.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	27	2	2.26252	3.2897549999999995	4.31699	0.056222	0.0250408	0.18407	0.12011
chr9	126883098	126883197	4199915	0	+	0.383838	(0.378,0.408]	chr9	383348	23	UTR3	UTR3:EXON_MRNA	ZBTB34	ENSG00000177125.6	ENST00000319119.5:ENST00000695642.1	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	2.26252	3.2897549999999995	4.31699	0.056222	0.0250408	0.18407	0.12011
chr20	3253225	3253325	7306743	0	-	0.53	(0.515,0.57]	chr20	744013	1	SS5_PROX	SS5_PROX:INTRON	DNAAF9	ENSG00000088854.13	ENST00000252032.10	protein_coding	protein_coding	protein_coding	protein_coding	3	39	2	1.60221	3.289715	4.97722	0.0581855	0.00168681	0.188704	0.0370386
chr22	41134517	41134616	7521920	0	+	0.525253	(0.515,0.57]	chr22	768550	25	INTRON	INTRON	EP300	ENSG00000100393.14	ENST00000263253.9:ENST00000674155.1:ENST00000634690.1	protein_coding	protein_coding	protein_coding	protein_coding	3	39	2	1.60221	3.289715	4.97722	0.0581855	0.00168681	0.188704	0.0370386
chr10	18624487	18624587	4570444	0	-	0.5	(0.476,0.515]	chr10	421519	78	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7:ENST00000606425.2	protein_coding	protein_coding	protein_coding	protein_coding	2	38	2	1.72558	3.289685	4.85379	0.0767648	0.00234214	0.196164	0.0442989
chr10	112750368	112750468	4525448	0	+	0.48	(0.476,0.515]	chr10	417335	127	INTRON	INTRON	VTI1A	ENSG00000151532.14	ENST00000393077.3	protein_coding	protein_coding	protein_coding	protein_coding	2	38	2	1.72558	3.289685	4.85379	0.0767648	0.00234214	0.196164	0.0442989
chr12	123350009	123350109	5445059	0	-	0.5	(0.476,0.515]	chr12	521112	3	SS5_PROX	SS5_PROX:INTRON	SBNO1	ENSG00000139697.14	ENST00000602398.3:ENST00000267176.8:ENST00000420886.6	protein_coding	protein_coding	protein_coding	protein_coding	2	38	2	1.72558	3.289685	4.85379	0.0767648	0.00234214	0.196164	0.0442989
chr16	67901635	67901734	6368922	0	+	0.484848	(0.476,0.515]	chr16	612023	79	INTRON	INTRON	PSKH1	ENSG00000159792.10	ENST00000291041.6:ENST00000570631.5:ENST00000575198.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	38	2	1.72558	3.289685	4.85379	0.0767648	0.00234214	0.196164	0.0442989
chr3	197290845	197290945	1903436	0	-	0.4	(0.378,0.408]	chr3	190678	76	INTRON	INTRON	DLG1	ENSG00000075711.21	ENST00000667157.1:ENST00000346964.6:ENST00000663148.1:ENST00000655488.1:ENST00000357674.9:ENST00000671185.1:ENST00000658701.1:ENST00000667104.1:ENST00000661336.1:ENST00000669565.1:ENST00000670455.1:ENST00000656087.1:ENST00000661453.1:ENST00000664564.1:ENST00000660432.1:ENST00000660898.1:ENST00000657381.1:ENST00000659221.1:ENST00000654737.1:ENST00000659716.1:ENST00000664991.1:ENST00000419354.5:ENST00000661440.1:ENST00000667971.1:ENST00000670935.1:ENST00000666007.1:ENST00000661229.1:ENST00000661013.1:ENST00000436682.6:ENST00000662727.1:ENST00000422288.6:ENST00000448528.6:ENST00000656944.1:ENST00000392382.6:ENST00000450955.5:ENST00000419227.5:ENST00000392381.7:ENST00000471733.5:ENST00000419553.6:ENST00000456699.6:ENST00000392380.6:ENST00000485409.5:ENST00000486877.1:ENST00000412364.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	61	2	1.29896	3.289645	5.28033	0.0575113	0.00143651	0.187655	0.0340925
chr17	48842565	48842662	6624063	0	+	0.412371	(0.408,0.44]	chr17	646431	8	EXON_MRNA	EXON_MRNA:INTRON	CALCOCO2	ENSG00000136436.15	ENST00000503463.5:ENST00000509507.5:ENST00000448105.6:ENST00000258947.8:ENST00000508679.5:ENST00000416445.6:ENST00000513119.5:ENST00000509415.5:ENST00000570513.5:ENST00000575560.5:ENST00000510356.5:ENST00000576582.5:ENST00000505071.5:ENST00000507076.1:ENST00000502761.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	158	2	2.74759	3.28961	3.83163	0.00102152	9.46262e-7	0.029231300000000002	5.54959e-4
chr2	169799278	169799357	907995	0	+	0.379747	(0.378,0.408]	chr2	100162	1	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	SSB	ENSG00000138385.16	ENST00000422006.5:ENST00000260956.9:ENST00000417292.5:ENST00000413002.5:ENST00000461708.1:ENST00000409333.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	227	2	3.17745	3.2895849999999998	3.40172	1.31721e-4	7.77258e-7	0.0104376	4.95745e-4
chr7	74712590	74712688	3335805	0	+	0.357143	(0.35,0.378]	chr7	310391	11	INTRON	INTRON	GTF2I	ENSG00000263001.8	ENST00000650807.1:ENST00000690345.1:ENST00000573035.6:ENST00000614986.4:ENST00000620879.4:ENST00000621734.4:ENST00000443166.5:ENST00000490431.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	115	2	3.09958	3.289505	3.47943	8.54875e-4	7.9007e-5	0.0267428	0.00739361
chr20	41497590	41497679	7343327	0	-	0.382022	(0.378,0.408]	chr20	748522	2	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CHD6	ENSG00000124177.16	ENST00000373233.8:ENST00000440697.5:ENST00000373222.3:ENST00000470470.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	40	2	1.88729	3.2894900000000002	4.69169	0.0532327	0.00432302	0.162538	0.0599409
chr3	48838145	48838245	1690898	0	-	0.39	(0.378,0.408]	chr3	172977	301	INTRON	INTRON	PRKAR2A	ENSG00000114302.16	ENST00000265563.13:ENST00000454963.5:ENST00000296446.12:ENST00000419216.1	protein_coding	protein_coding	protein_coding	protein_coding	2	40	2	1.88729	3.2894900000000002	4.69169	0.0532327	0.00432302	0.162538	0.0599409
chr4	17940994	17941094	2117483	0	-	0.32	(0.28,0.32]	chr4	209129	313	INTRON	INTRON	LCORL	ENSG00000178177.17	ENST00000635767.2:ENST00000326877.8:ENST00000675131.1:ENST00000675143.1:ENST00000637787.1:ENST00000675605.1:ENST00000510451.5:ENST00000510121.5:ENST00000675927.1:ENST00000382224.5:ENST00000382226.5:ENST00000676061.1:ENST00000674942.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	99	2	3.11673	3.289415	3.4621	0.00218379	6.61685e-4	0.0417893	0.0232856
chr6	149757828	149757927	2996115	0	+	0.313131	(0.28,0.32]	chr6	280342	72	INTRON	INTRON	PCMT1	ENSG00000120265.19	ENST00000367384.7:ENST00000367378.6:ENST00000484601.6:ENST00000367380.9:ENST00000544496.5:ENST00000649295.1:ENST00000494411.6:ENST00000460828.6:ENST00000464889.7:ENST00000486585.2:ENST00000495487.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	100	2	2.59817	3.289415	3.98066	0.00753816	1.35849e-4	0.0748659	0.0100405
chr5	127004735	127004835	2714300	0	-	0.39	(0.378,0.408]	chr5	255278	580	INTRON	INTRON	MARCHF3	ENSG00000173926.6	ENST00000308660.6:ENST00000502289.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	152	2	2.82558	3.28939	3.7532	3.09716e-4	1.39544e-5	0.0162047	0.00278668
chr2	20304677	20304777	1076313	0	-	0.29	(0.28,0.32]	chr2	114994	66	INTRON	INTRON	PUM2	ENSG00000055917.16	ENST00000338086.9:ENST00000361078.7:ENST00000440577.5	protein_coding	protein_coding	protein_coding	protein_coding	3	53	2	2.06884	3.289325	4.50981	0.0275554	0.0152581	0.123904	0.108569
chr19	7930937	7931037	7130188	0	-	0.63	(0.57,1]	chr19	718301	4	SS5_PROX	SS5_PROX:INTRON	TIMM44	ENSG00000104980.8	ENST00000270538.8:ENST00000595565.5:ENST00000595831.5:ENST00000598968.5:ENST00000599650.1:ENST00000598481.1:ENST00000595876.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	24	2	1.9042	3.289315	4.67443	0.0476976	8.07515e-4	0.153019	0.0258804
chr3	39103289	39103380	1659126	0	-	0.582418	(0.57,1]	chr3	170298	3	EXON_MRNA	EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GORASP1	ENSG00000114745.15	ENST00000479927.6:ENST00000319283.8:ENST00000469471.2:ENST00000489587.2:ENST00000422110.7:ENST00000453680.6:ENST00000695445.1:ENST00000695592.1:ENST00000452389.7:ENST00000695424.1:ENST00000695442.1:ENST00000695412.1:ENST00000492064.6:ENST00000695414.1:ENST00000441302.6:ENST00000695597.1:ENST00000695441.1:ENST00000695446.1:ENST00000695587.1:ENST00000695430.1:ENST00000419156.6:ENST00000411813.6:ENST00000695590.1:ENST00000695595.1:ENST00000473827.6:ENST00000476334.2:ENST00000695428.1:ENST00000695429.1:ENST00000695427.1:ENST00000695426.1:ENST00000695425.1:ENST00000437458.4:ENST00000695589.1:ENST00000695588.1:ENST00000695591.1:ENST00000695431.1:ENST00000441081.2:ENST00000470910.6:ENST00000695444.1:ENST00000431601.6:ENST00000427459.4:ENST00000695416.1:ENST00000466443.1:ENST00000493751.2:ENST00000488479.1:ENST00000695417.1:ENST00000413243.4:ENST00000493938.6:ENST00000695613.1:ENST00000416741.6:ENST00000695397.1:ENST00000486133.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	24	2	1.9042	3.289315	4.67443	0.0476976	8.07515e-4	0.153019	0.0258804
chr6	107944895	107944995	3182714	0	-	0.58	(0.57,1]	chr6	296463	150	INTRON	INTRON	SEC63	ENSG00000025796.14	ENST00000369002.9:ENST00000429168.1:ENST00000484803.5:ENST00000446496.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	45	2	2.42282	3.289255	4.15569	0.00879576	1.16266e-5	0.0790073	0.00251847
chr1	77609851	77609951	492729	0	-	0.33	(0.32,0.35]	chr1	58292	248	INTRON	INTRON	ZZZ3	ENSG00000036549.13	ENST00000370801.8:ENST00000481346.5:ENST00000476275.5:ENST00000370798.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	39	2	1.88468	3.2892400000000004	4.6938	0.0515071	0.0137794	0.176696	0.0949306
chr1	235398108	235398208	339981	0	+	0.33	(0.32,0.35]	chr1	39551	176	INTRON	INTRON	TBCE	ENSG00000285053.1:ENSG00000284770.2	ENST00000644055.1:ENST00000645655.1:ENST00000647428.1:ENST00000643418.1:ENST00000646624.1:ENST00000647186.1:ENST00000646528.1:ENST00000645351.1:ENST00000643410.1:ENST00000645205.1:ENST00000645836.1:ENST00000642503.1:ENST00000646281.1:ENST00000645069.1:ENST00000644680.1:ENST00000643758.1:ENST00000645578.1:ENST00000642431.1:ENST00000644604.1:ENST00000651186.1:ENST00000643125.1:ENST00000406207.5:ENST00000642463.1:ENST00000645899.1:ENST00000647233.1:ENST00000642926.1:ENST00000644578.1:ENST00000647418.1:ENST00000645372.1:ENST00000645582.1:ENST00000643994.1:ENST00000647407.1:ENST00000642610.2:ENST00000644037.1:ENST00000646463.1:ENST00000366601.8:ENST00000643524.1:ENST00000646536.1:ENST00000643142.1:ENST00000644838.1:ENST00000646286.1:ENST00000646186.1:ENST00000643615.1:ENST00000543662.4:ENST00000646848.1:ENST00000647332.1:ENST00000647489.1:ENST00000644625.1:ENST00000646384.1:ENST00000645551.1:ENST00000646821.1:ENST00000472011.6:ENST00000643238.1:ENST00000646104.1:ENST00000645662.1:ENST00000643993.1:ENST00000645964.1:ENST00000642339.1:ENST00000644217.1:ENST00000642372.1:ENST00000646929.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	39	2	1.88468	3.2892400000000004	4.6938	0.0515071	0.0137794	0.176696	0.0949306
chr10	63323601	63323701	4633966	0	-	0.34	(0.32,0.35]	chr10	426226	545	INTRON	INTRON	JMJD1C	ENSG00000171988.20	ENST00000399262.7:ENST00000633035.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	39	2	1.88468	3.2892400000000004	4.6938	0.0515071	0.0137794	0.176696	0.0949306
chr12	31971054	31971153	5106720	0	+	0.323232	(0.32,0.35]	chr12	482333	3	INTRON	INTRON	RESF1	ENSG00000174718.12	ENST00000541981.5:ENST00000540924.5:ENST00000312561.9:ENST00000535596.5:ENST00000397578.7:ENST00000381054.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	39	2	1.88468	3.2892400000000004	4.6938	0.0515071	0.0137794	0.176696	0.0949306
chr2	127334178	127334278	1223270	0	-	0.35	(0.32,0.35]	chr2	130261	33	INTRON	INTRON	MAP3K2	ENSG00000169967.17	ENST00000682094.1:ENST00000409947.5:ENST00000344908.9	protein_coding	protein_coding	protein_coding	protein_coding	2	39	2	1.88468	3.2892400000000004	4.6938	0.0515071	0.0137794	0.176696	0.0949306
chr2	107728546	107728646	1205835	0	-	0.17	[0,0.28]	chr2	128532	109	INTRON	INTRON	LINC01885:ENSG00000286769	ENSG00000237880.2:ENSG00000286769.1	ENST00000654481.1:ENST00000669817.1	lncRNA	lncRNA	lncRNA	lncRNA	2	84	2	2.9385	3.289155	3.63981	0.0142776	8.51767e-4	0.0963703	0.0264928
chr1	31629865	31629958	413295	0	-	0.333333	(0.32,0.35]	chr1	49821	1	UTR3	UTR3:EXON_MRNA	PEF1	ENSG00000162517.13	ENST00000373703.5	protein_coding	protein_coding	protein_coding	protein_coding	2	39	2	1.81328	3.289145	4.76501	0.0615716	0.0114287	0.193423	0.0886611
chr1	67687460	67687560	142291	0	+	0.34	(0.32,0.35]	chr1	15926	4	SS3_PROX	SS3_PROX:INTRON	GADD45A	ENSG00000116717.13	ENST00000370986.9:ENST00000370985.4:ENST00000650283.1:ENST00000648742.1:ENST00000617962.2	protein_coding	protein_coding	protein_coding	protein_coding	2	39	2	1.81328	3.289145	4.76501	0.0615716	0.0114287	0.193423	0.0886611
chr2	45595954	45596053	1113206	0	-	0.323232	(0.32,0.35]	chr2	119361	98	INTRON	INTRON	SRBD1	ENSG00000068784.13	ENST00000263736.5	protein_coding	protein_coding	protein_coding	protein_coding	2	39	2	1.81328	3.289145	4.76501	0.0615716	0.0114287	0.193423	0.0886611
chr10	17693612	17693712	4399766	0	+	0.31	(0.28,0.32]	chr10	406185	3	SS5_PROX	SS5_PROX:INTRON	STAM	ENSG00000136738.15	ENST00000377524.8:ENST00000377500.1	protein_coding	protein_coding	protein_coding	protein_coding	2	43	2	2.24061	3.28913	4.33765	0.039714	0.0194267	0.143072	0.119831
chr7	152274367	152274466	3679665	0	-	0.30303	(0.28,0.32]	chr7	341617	1	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000684262.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	43	2	2.24061	3.28913	4.33765	0.039714	0.0194267	0.143072	0.119831
chr9	77916660	77916760	4270796	0	-	0.46	(0.44,0.476]	chr9	392874	1005	INTRON	INTRON	GNAQ	ENSG00000156052.11	ENST00000286548.9:ENST00000411677.1	protein_coding	protein_coding	protein_coding	protein_coding	2	59	2	3.02751	3.2890949999999997	3.55068	0.00715968	7.06861e-4	0.0723634	0.0241881
chr14	34620893	34620993	5867012	0	-	0.44	(0.408,0.44]	chr14	557216	108	INTRON	INTRON	SNX6	ENSG00000129515.20	ENST00000362031.10:ENST00000396526.7:ENST00000652385.1:ENST00000556162.6:ENST00000555416.6:ENST00000557265.6:ENST00000556712.6:ENST00000557341.6:ENST00000556303.1:ENST00000555648.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	79	2	2.9826	3.2890800000000002	3.59556	9.23082e-4	8.33275e-4	0.0278392	0.0266389
chr12	119817419	119817519	5431668	0	-	0.58	(0.57,1]	chr12	518974	130	INTRON	INTRON	CIT	ENSG00000122966.17	ENST00000392521.7:ENST00000261833.11:ENST00000612548.4:ENST00000536325.1	protein_coding	protein_coding	protein_coding	protein_coding	2	24	2	2.13445	3.2890550000000003	4.44366	0.0241482	0.00210922	0.12011	0.0425419
chr21	44941884	44941984	7417478	0	+	0.58	(0.57,1]	chr21	756215	13	INTRON	INTRON	SLX9	ENSG00000160256.13	ENST00000397826.7:ENST00000458015.1:ENST00000291634.11	protein_coding	protein_coding	protein_coding	protein_coding	2	24	2	2.13445	3.2890550000000003	4.44366	0.0241482	0.00210922	0.12011	0.0425419
chr1	55206598	55206698	465817	0	-	0.35	(0.32,0.35]	chr1	56290	281	INTRON	INTRON	USP24	ENSG00000162402.14	ENST00000294383.7	protein_coding	protein_coding	protein_coding	protein_coding	2	68	2	3.16237	3.288955	3.41554	0.00550276	0.00153152	0.0648867	0.0361484
chr8	6725039	6725139	3695169	0	+	0.3	(0.28,0.32]	chr8	342833	1	SS5_PROX	SS5_PROX:INTRON	AGPAT5	ENSG00000155189.12	ENST00000285518.11:ENST00000523234.5:ENST00000518327.1:ENST00000523586.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	74	2	2.96187	3.288935	3.616	0.0114995	7.42427e-4	0.0889104	0.024913
chr1	39133988	39134088	75176	0	+	0.34	(0.32,0.35]	chr1	9693	279	INTRON	INTRON	MACF1	ENSG00000127603.32	ENST00000361689.7:ENST00000689911.1:ENST00000567887.5:ENST00000372915.8:ENST00000472385.2:ENST00000693209.1:ENST00000524432.5:ENST00000467673.5:ENST00000688212.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	32	2	2.30673	3.28893	4.27113	0.0584434	0.0199982	0.167723	0.120668
chr17	57302061	57302160	6633208	0	+	0.333333	(0.32,0.35]	chr17	648017	69	INTRON	INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000581776.5:ENST00000674961.1:ENST00000582453.5:ENST00000675656.1:ENST00000322684.7:ENST00000579590.5:ENST00000676073.1:ENST00000675822.1:ENST00000442934.6:ENST00000579180.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	32	2	2.30673	3.28893	4.27113	0.0584434	0.0199982	0.167723	0.120668
chr12	54238182	54238281	5330470	0	-	0.333333	(0.32,0.35]	chr12	508602	74	UTR3	UTR3:EXON_MRNA	CBX5	ENSG00000094916.16	ENST00000209875.9	protein_coding	protein_coding	protein_coding	protein_coding	6	178	2	3.13352	3.2889299999999997	3.44434	2.25801e-4	1.98095e-5	0.0138078	0.00343249
chr15	76801854	76801953	6232938	0	-	0.444444	(0.44,0.476]	chr15	595159	11	INTRON	INTRON	SCAPER	ENSG00000140386.13	ENST00000563290.6:ENST00000538941.6:ENST00000324767.11:ENST00000303521.10:ENST00000564590.5:ENST00000565507.5:ENST00000565970.5:ENST00000568382.5:ENST00000565372.5:ENST00000564177.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	59	2	3.26669	3.288895	3.3111	0.00305435	0.0020006	0.0493883	0.0412555
chr7	105037625	105037725	3374852	0	+	0.44	(0.408,0.44]	chr7	315855	1	SS3_PROX	SS3_PROX:INTRON	KMT2E	ENSG00000005483.22	ENST00000622386.2:ENST00000257745.9:ENST00000334884.9:ENST00000311117.8:ENST00000478990.5:ENST00000480368.5:ENST00000495267.5:ENST00000476671.5:ENST00000667857.1:ENST00000474203.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	55	2	1.49789	3.28886	5.07983	0.0390091	0.00247652	0.161009	0.0446195
chr1	16311487	16311587	382208	0	-	0.18	[0,0.28]	chr1	44880	52	INTRON	INTRON	FBXO42	ENSG00000037637.11	ENST00000375592.8:ENST00000478089.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	57	2	1.95669	3.288765	4.62084	0.0313633	0.0237518	0.13151	0.129075
chr9	130748554	130748654	4214210	0	+	0.53	(0.515,0.57]	chr9	386427	337	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000393293.4	protein_coding	protein_coding	protein_coding	protein_coding	7	139	2	2.7626	3.288615	3.81463	1.26197e-4	6.3757e-6	0.0101515	0.0017789
chr16	70281627	70281725	6510417	0	-	0.326531	(0.32,0.35]	chr16	630605	16	INTRON	INTRON	AARS1	ENSG00000090861.17	ENST00000674963.1:ENST00000675643.1:ENST00000674691.1:ENST00000261772.13:ENST00000675569.1:ENST00000676209.1:ENST00000676211.1:ENST00000676040.1:ENST00000675953.1:ENST00000675691.1:ENST00000676004.1:ENST00000675403.1:ENST00000676212.1:ENST00000675045.1:ENST00000675035.1:ENST00000676168.1:ENST00000674652.1:ENST00000675133.1:ENST00000675120.1:ENST00000674811.1:ENST00000674512.1:ENST00000675853.1:ENST00000565361.3:ENST00000676247.1:ENST00000674848.1:ENST00000674962.1:ENST00000675371.1:ENST00000675986.1:ENST00000674768.1:ENST00000675297.1:ENST00000675751.1:ENST00000564359.6:ENST00000675338.1:ENST00000675155.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	42	2	2.4053	3.2885549999999997	4.17181	0.04531	0.0108284	0.149888	0.0920575
chr10	102161193	102161280	4512605	0	+	0.413793	(0.408,0.44]	chr10	415663	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NOLC1	ENSG00000166197.17	ENST00000405356.5:ENST00000605788.6:ENST00000464969.6:ENST00000603946.5:ENST00000488254.6:ENST00000370007.5:ENST00000477977.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	51	2	2.04611	3.288495	4.53088	0.016628	0.00669275	0.102621	0.0738715
chr17	82915235	82915333	6695883	0	+	0.55102	(0.515,0.57]	chr17	655036	12	INTRON	INTRON	TBCD	ENSG00000141556.22	ENST00000682479.1:ENST00000682722.1:ENST00000684464.1:ENST00000684544.1:ENST00000681983.1:ENST00000684361.1:ENST00000683184.1:ENST00000683282.1:ENST00000684408.1:ENST00000355528.9:ENST00000683444.1:ENST00000684776.1:ENST00000683041.1:ENST00000684760.1:ENST00000684349.1:ENST00000682213.1:ENST00000539345.6:ENST00000684000.1:ENST00000684188.1:ENST00000684429.1:ENST00000682610.1:ENST00000683821.1:ENST00000682654.1:ENST00000576160.6:ENST00000571712.5:ENST00000576996.5:ENST00000683584.1:ENST00000682099.1:ENST00000684559.1:ENST00000576760.5:ENST00000683839.1:ENST00000574975.5:ENST00000572953.5:ENST00000571796.5:ENST00000682315.1:ENST00000574422.1:ENST00000576677.6:ENST00000571618.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	82	2	2.53705	3.2884349999999998	4.03982	0.00186194	6.5518e-5	0.039946	0.00715707
chr1	182878949	182879049	273399	0	+	0.42	(0.408,0.44]	chr1	31965	3	SS3_PROX	SS3_PROX:INTRON	DHX9	ENSG00000135829.17	ENST00000367549.4:ENST00000474446.5:ENST00000485081.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	60	2	2.89795	3.288405	3.67886	0.0110735	3.86173e-4	0.0873897	0.017761
chr16	70669424	70669524	6512020	0	-	0.49	(0.476,0.515]	chr16	630830	35	INTRON	INTRON	MTSS2	ENSG00000132613.16	ENST00000338779.11	protein_coding	protein_coding	protein_coding	protein_coding	3	46	2	1.58335	3.2883850000000003	4.99342	0.0640461	0.00139274	0.177882	0.0341261
chr1	6596156	6596256	368182	0	-	0.54	(0.515,0.57]	chr1	43253	2	INTRON	INTRON	KLHL21	ENSG00000162413.17	ENST00000377663.3:ENST00000377658.8:ENST00000467612.5:ENST00000496707.5:ENST00000463043.1	protein_coding	protein_coding	protein_coding	protein_coding	2	52	2	3.12663	3.288385	3.45014	0.00374498	0.00116948	0.0562234	0.0312127
chr5	79627779	79627879	2398885	0	+	0.42	(0.408,0.44]	chr5	231707	39	INTRON	INTRON	TENT2	ENSG00000164329.14	ENST00000423041.6:ENST00000504233.5:ENST00000453514.6:ENST00000428308.6:ENST00000296783.7	protein_coding	protein_coding	protein_coding	protein_coding	4	106	2	3.0946	3.2883199999999997	3.48204	7.51561e-4	6.71132e-5	0.0251179	0.00678102
chr2	61403611	61403711	1129879	0	-	0.41	(0.408,0.44]	chr2	121485	80	INTRON	INTRON	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000453133.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	61	2	2.78122	3.28828	3.79534	0.015812	2.17043e-4	0.101453	0.0129235
chr10	71828563	71828657	4642608	0	-	0.489362	(0.476,0.515]	chr10	427154	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PSAP	ENSG00000197746.15	ENST00000394936.8	protein_coding	protein_coding	protein_coding	protein_coding	4	50	2	1.73688	3.28825	4.83962	0.0252731	0.00480934	0.133676	0.0602209
chr17	31954271	31954371	6595850	0	+	0.6	(0.57,1]	chr17	641554	62	INTRON	INTRON	SUZ12	ENSG00000178691.11	ENST00000322652.10:ENST00000580398.1	protein_coding	protein_coding	protein_coding	protein_coding	2	33	2	3.09313	3.2882499999999997	3.48337	0.00369015	6.20854e-4	0.0535094	0.0223951
chr7	102644189	102644289	3588962	0	-	0.58	(0.57,1]	chr7	335089	15	INTRON	INTRON	ENSG00000267645	ENSG00000267645.5	ENST00000476151.5	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	2	33	2	3.09313	3.2882499999999997	3.48337	0.00369015	6.20854e-4	0.0535094	0.0223951
chr10	124782757	124782856	4712456	0	-	0.393939	(0.378,0.408]	chr10	434817	76	INTRON	INTRON	EEF1AKMT2	ENSG00000203791.15	ENST00000652548.1:ENST00000466270.5:ENST00000368836.7:ENST00000464099.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	61	2	3.14892	3.2882100000000003	3.4275	0.00499984	0.00126053	0.0617433	0.03295
chr7	87835354	87835453	3565947	0	-	0.343434	(0.32,0.35]	chr7	332265	19	UTR3	UTR3:EXON_MRNA	SLC25A40	ENSG00000075303.13	ENST00000341119.10	protein_coding	protein_coding	protein_coding	protein_coding	3	47	2	1.61669	3.2882000000000002	4.95971	0.0578816	0.00663522	0.188651	0.0703181
chr1	23746645	23746743	44609	0	+	0.346939	(0.32,0.35]	chr1	5388	20	INTRON	INTRON	ELOA	ENSG00000011007.13	ENST00000418390.7:ENST00000609199.2:ENST00000613537.5:ENST00000487554.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	91	2	3.05808	3.28808	3.51808	0.00151238	7.67153e-4	0.0352794	0.0254532
chr3	53283526	53283625	1704441	0	-	0.292929	(0.28,0.32]	chr3	175611	2	UTR3	UTR3:EXON_MRNA	DCP1A	ENSG00000272886.6	ENST00000610213.6	protein_coding	protein_coding	protein_coding	protein_coding	2	46	2	1.81582	3.2880649999999996	4.76031	0.068122	0.00656106	0.184298	0.0735539
chr5	32593573	32593673	2334834	0	+	0.44	(0.408,0.44]	chr5	225364	15	INTRON	INTRON	SUB1	ENSG00000113387.12	ENST00000506237.5:ENST00000512913.5:ENST00000513013.5:ENST00000265073.9:ENST00000511615.5:ENST00000515355.5:ENST00000502897.5:ENST00000504789.5:ENST00000504016.1:ENST00000511175.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	60	2	3.20437	3.287995	3.37162	0.00306596	0.00208674	0.0509893	0.0411801
chr6	147685123	147685223	2990847	0	+	0.31	(0.28,0.32]	chr6	280163	86	INTRON	INTRON	ENSG00000227681	ENSG00000227681.5	ENST00000427015.1:ENST00000432506.5:ENST00000442094.5	lncRNA	lncRNA	lncRNA	lncRNA	5	161	2	3.2748	3.287975	3.30115	4.91009e-4	6.71944e-5	0.0205691	0.00678102
chr1	231559934	231560033	337920	0	+	0.333333	(0.32,0.35]	chr1	39328	54	INTRON	INTRON	TSNAX	ENSG00000116918.15	ENST00000413309.3:ENST00000366639.9:ENST00000475168.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	54	2	1.49965	3.28797	5.07629	0.0542985	0.00468114	0.182243	0.0600108
chr1	67053236	67053310	477386	0	-	0.378378	(0.378,0.408]	chr1	57454	3	SS3_PROX	SS3_PROX:INTRON	SLC35D1	ENSG00000116704.8	ENST00000235345.6	protein_coding	protein_coding	protein_coding	protein_coding	3	44	2	1.8374	3.287895	4.73839	0.0299228	0.00837252	0.142135	0.0774402
chr21	9112588	9112687	7426465	0	-	0.393939	(0.378,0.408]	chr21	757579	243	INTRON	INTRON	TEKT4P2	ENSG00000188681.12	ENST00000690061.1:ENST00000689141.1:ENST00000688310.1:ENST00000687537.1:ENST00000690096.1:ENST00000687888.1:ENST00000690389.1:ENST00000684989.1:ENST00000416067.6:ENST00000693307.1:ENST00000692383.1:ENST00000685666.1:ENST00000688451.1:ENST00000691190.1:ENST00000685532.1:ENST00000687488.1:ENST00000690713.1:ENST00000691834.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	3	44	2	1.8374	3.287895	4.73839	0.0299228	0.00837252	0.142135	0.0774402
chr1	168244536	168244636	250350	0	+	0.47	(0.44,0.476]	chr1	29769	21	UTR3	UTR3:EXON_MRNA	SFT2D2	ENSG00000213064.10	ENST00000271375.7	protein_coding	protein_coding	protein_coding	protein_coding	4	49	2	1.54868	3.287855	5.02703	0.0457575	0.00278015	0.164677	0.0469265
chr2	61281442	61281542	1128614	0	-	0.49	(0.476,0.515]	chr2	121301	2	SS3_PROX	SS3_PROX:INTRON	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000472706.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	107	2	2.51682	3.287755	4.05869	9.59562e-4	8.7207e-5	0.0284801	0.00839538
chr3	152372390	152372490	1536025	0	+	0.44	(0.408,0.44]	chr3	160003	368	INTRON	INTRON	MBNL1	ENSG00000152601.18	ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000495875.6:ENST00000324210.10:ENST00000493459.5:ENST00000459747.1:ENST00000460591.5:ENST00000545754.5:ENST00000357472.7:ENST00000324196.9:ENST00000498502.5:ENST00000463374.5:ENST00000485910.5:ENST00000465907.6:ENST00000492948.5:ENST00000485509.5:ENST00000464596.5	protein_coding	protein_coding	protein_coding	protein_coding	6	154	2	2.92893	3.28775	3.64657	4.29493e-4	3.48759e-6	0.0190249	0.00120947
chr10	68968089	68968185	4443612	0	+	0.5	(0.476,0.515]	chr10	409857	5	INTRON	INTRON	DDX21	ENSG00000165732.14	ENST00000685106.1:ENST00000687162.1:ENST00000684824.1:ENST00000354185.9:ENST00000686528.1:ENST00000690650.1:ENST00000690316.1:ENST00000620315.2:ENST00000685513.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	38	2	1.79693	3.2877449999999997	4.77856	0.0649782	0.00305743	0.179417	0.0509893
chr20	31558314	31558413	7253429	0	+	0.494949	(0.476,0.515]	chr20	736659	31	INTRON	INTRON	HM13	ENSG00000101294.18	ENST00000335574.10:ENST00000674240.1:ENST00000340852.9:ENST00000398174.9:ENST00000649820.1:ENST00000466766.2:ENST00000650367.1:ENST00000344042.5:ENST00000649374.1:ENST00000469126.5:ENST00000492709.5:ENST00000469097.5:ENST00000487964.5:ENST00000649583.1:ENST00000460389.5:ENST00000494153.5:ENST00000483310.5:ENST00000472128.5:ENST00000474466.5:ENST00000468559.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	38	2	1.79693	3.2877449999999997	4.77856	0.0649782	0.00305743	0.179417	0.0509893
chr3	60150835	60150935	1711122	0	-	0.51	(0.476,0.515]	chr3	176138	701	INTRON	INTRON	FHIT	ENSG00000189283.10	ENST00000492590.6:ENST00000476844.5:ENST00000468189.5:ENST00000488467.5	protein_coding	protein_coding	protein_coding	protein_coding	2	38	2	1.79693	3.2877449999999997	4.77856	0.0649782	0.00305743	0.179417	0.0509893
chr8	73793801	73793901	3971403	0	-	0.29	(0.28,0.32]	chr8	364207	77	UTR3	UTR3:EXON_MRNA:INTRON	ENSG00000258677:UBE2W	ENSG00000258677.2:ENSG00000104343.21	ENST00000358757.5:ENST00000523278.5:ENST00000602593.6:ENST00000517608.5:ENST00000650817.1:ENST00000422906.6:ENST00000419880.7:ENST00000651945.1:ENST00000519277.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	99	2	3.14383	3.287705	3.43158	0.00244075	5.83228e-4	0.0445752	0.0219397
chr19	19409818	19409918	7035387	0	+	0.46	(0.44,0.476]	chr19	701433	34	INTRON	INTRON	GATAD2A	ENSG00000167491.18	ENST00000494516.6:ENST00000360315.7:ENST00000609040.5:ENST00000417582.6:ENST00000683918.1:ENST00000448576.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	41	2	2.24189	3.287675	4.33346	0.0193405	0.0120349	0.108861	0.0962115
chr6	14920942	14921041	3062138	0	-	0.474747	(0.44,0.476]	chr6	284639	471	INTRON	INTRON	ENSG00000234261	ENSG00000234261.5	ENST00000629853.2:ENST00000653525.1	lncRNA	lncRNA	lncRNA	lncRNA	2	41	2	2.24189	3.287675	4.33346	0.0193405	0.0120349	0.108861	0.0962115
chr22	36383206	36383306	7585421	0	-	0.46	(0.44,0.476]	chr22	776241	127	INTRON	INTRON	MYH9	ENSG00000100345.23	ENST00000216181.11:ENST00000685801.1:ENST00000692930.1:ENST00000685187.1:ENST00000691687.1:ENST00000685191.1:ENST00000691296.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	63	2	2.89047	3.2876000000000003	3.68473	0.00955699	5.47507e-4	0.0863913	0.0215463
chr17	50741416	50741486	6627200	0	+	0.271429	[0,0.28]	chr17	647217	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	LUC7L3	ENSG00000108848.16	ENST00000508045.5:ENST00000393227.6:ENST00000504563.6:ENST00000505658.6:ENST00000240304.5:ENST00000508482.5:ENST00000505619.5:ENST00000507200.5:ENST00000513025.2:ENST00000507503.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	65	2	2.37401	3.287535	4.20106	0.0695895	0.00568456	0.184298	0.0678837
chr16	8850865	8850957	6285201	0	+	0.423913	(0.408,0.44]	chr16	601870	12	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	PMM2	ENSG00000140650.13	ENST00000683094.1:ENST00000683274.1:ENST00000682393.1:ENST00000683761.1:ENST00000565934.2	protein_coding	retained_intron	protein_coding	retained_intron:nonsense_mediated_decay	4	49	2	1.49523	3.2875300000000003	5.07983	0.0534846	0.00247652	0.180041	0.0446195
chr1	226304964	226305062	647816	0	-	0.469388	(0.44,0.476]	chr1	76752	34	INTRON	INTRON	LIN9	ENSG00000183814.16	ENST00000460719.5:ENST00000366808.6:ENST00000328205.9:ENST00000681046.1:ENST00000481685.1:ENST00000359525.2	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	2.74063	3.287515	3.8344	0.041276	0.0176095	0.161534	0.105143
chr14	69659812	69659912	5776194	0	+	0.46	(0.44,0.476]	chr14	547310	7	INTRON	INTRON	SUSD6	ENSG00000100647.8	ENST00000342745.5:ENST00000556993.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	31	2	2.74063	3.287515	3.8344	0.041276	0.0176095	0.161534	0.105143
chr21	15837922	15838022	7371194	0	+	0.46	(0.44,0.476]	chr21	752286	40	INTRON	INTRON	USP25	ENSG00000155313.16	ENST00000400183.7:ENST00000285681.6:ENST00000285679.10:ENST00000351097.9	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	2.74063	3.287515	3.8344	0.041276	0.0176095	0.161534	0.105143
chr8	31074084	31074183	3728342	0	+	0.474747	(0.44,0.476]	chr8	346558	54	INTRON	INTRON	WRN	ENSG00000165392.11	ENST00000650667.1:ENST00000298139.7:ENST00000651642.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	31	2	2.74063	3.287515	3.8344	0.041276	0.0176095	0.161534	0.105143
chr1	21755171	21755268	396585	0	-	0.360825	(0.35,0.378]	chr1	47332	17	INTRON	INTRON	USP48	ENSG00000090686.16	ENST00000400301.5:ENST00000308271.14:ENST00000529637.5:ENST00000421625.6:ENST00000527823.5:ENST00000532737.1	protein_coding	protein_coding	protein_coding	protein_coding	3	89	2	2.32464	3.287495	4.25035	0.0159285	2.16564e-5	0.101453	0.00361845
chr1	10557876	10557976	23811	0	+	0.34	(0.32,0.35]	chr1	2518	212	INTRON	INTRON	PEX14	ENSG00000142655.13	ENST00000356607.9:ENST00000491661.2	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	2.40308	3.287445	4.17181	0.04531	0.0417732	0.161736	0.149888
chr1	43404923	43405017	84875	0	+	0.340426	(0.32,0.35]	chr1	11223	5	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	SZT2	ENSG00000198198.17	ENST00000372450.8:ENST00000562955.2:ENST00000634258.3:ENST00000406439.7:ENST00000638631.1:ENST00000357658.4:ENST00000639852.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	29	2	2.40308	3.287445	4.17181	0.04531	0.0417732	0.161736	0.149888
chr1	99872146	99872243	170333	0	+	0.329897	(0.32,0.35]	chr1	18372	9	INTRON	INTRON	AGL	ENSG00000162688.17	ENST00000361915.8:ENST00000370165.7:ENST00000370163.7:ENST00000294724.8:ENST00000361302.7:ENST00000370161.6:ENST00000637337.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	29	2	2.40308	3.287445	4.17181	0.04531	0.0417732	0.161736	0.149888
chr1	206715937	206716037	302446	0	+	0.34	(0.32,0.35]	chr1	34692	301	INTRON	INTRON	MAPKAPK2	ENSG00000162889.11	ENST00000367103.4:ENST00000294981.8	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	2.40308	3.287445	4.17181	0.04531	0.0417732	0.161736	0.149888
chr11	46629306	46629406	4784788	0	+	0.33	(0.32,0.35]	chr11	442584	35	INTRON	INTRON	ATG13	ENSG00000175224.17	ENST00000580238.5:ENST00000581416.5:ENST00000529655.5:ENST00000526715.5:ENST00000533325.5:ENST00000683050.1:ENST00000583249.5:ENST00000581438.5:ENST00000526508.5:ENST00000530500.5:ENST00000577256.5:ENST00000578626.5:ENST00000524625.5:ENST00000530942.1:ENST00000534610.5:ENST00000582547.5:ENST00000359513.8:ENST00000528494.5:ENST00000395549.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	29	2	2.40308	3.287445	4.17181	0.04531	0.0417732	0.161736	0.149888
chr12	116269867	116269967	5425473	0	-	0.33	(0.32,0.35]	chr12	518291	318	INTRON	INTRON	MED13L	ENSG00000123066.9	ENST00000281928.9:ENST00000650226.1:ENST00000548743.2:ENST00000551197.2:ENST00000650375.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	29	2	2.40308	3.287445	4.17181	0.04531	0.0417732	0.161736	0.149888
chr12	132638434	132638533	5448641	0	-	0.333333	(0.32,0.35]	chr12	521697	4	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	POLE	ENSG00000177084.18	ENST00000320574.10:ENST00000434528.4:ENST00000672742.1:ENST00000672002.1:ENST00000537064.5:ENST00000535270.5:ENST00000541213.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	29	2	2.40308	3.287445	4.17181	0.04531	0.0417732	0.161736	0.149888
chr14	90798306	90798406	5951565	0	-	0.35	(0.32,0.35]	chr14	565050	116	INTRON	INTRON	TTC7B	ENSG00000165914.15	ENST00000328459.11:ENST00000553948.1	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	2.40308	3.287445	4.17181	0.04531	0.0417732	0.161736	0.149888
chr15	92968604	92968702	6104401	0	+	0.336735	(0.32,0.35]	chr15	581502	7	INTRON	INTRON	CHD2	ENSG00000173575.22	ENST00000626874.2:ENST00000394196.9:ENST00000635856.1:ENST00000625990.3:ENST00000637572.1:ENST00000636881.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	29	2	2.40308	3.287445	4.17181	0.04531	0.0417732	0.161736	0.149888
chr4	48420943	48421037	1957830	0	+	0.329787	(0.32,0.35]	chr4	196171	1	INTRON	INTRON	SLAIN2	ENSG00000109171.15	ENST00000264313.11:ENST00000512093.5	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	2.40308	3.287445	4.17181	0.04531	0.0417732	0.161736	0.149888
chr4	55631648	55631746	2150653	0	-	0.336735	(0.32,0.35]	chr4	211642	8	INTRON	INTRON	NMU	ENSG00000109255.11	ENST00000511469.5:ENST00000264218.7:ENST00000505262.5:ENST00000507338.1:ENST00000515325.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	29	2	2.40308	3.287445	4.17181	0.04531	0.0417732	0.161736	0.149888
chr5	27239925	27240025	2327260	0	+	0.33	(0.32,0.35]	chr5	225078	212	INTRON	INTRON	PURPL	ENSG00000250337.8	ENST00000651409.1:ENST00000650981.1	lncRNA	lncRNA	lncRNA	lncRNA	1	29	2	2.40308	3.287445	4.17181	0.04531	0.0417732	0.161736	0.149888
chr5	151782797	151782896	2521903	0	+	0.343434	(0.32,0.35]	chr5	241290	47	INTRON	INTRON	G3BP1	ENSG00000145907.16	ENST00000523519.5:ENST00000520578.6:ENST00000627077.2:ENST00000678976.1:ENST00000677408.1:ENST00000678070.1:ENST00000678964.1:ENST00000678925.1:ENST00000394123.7:ENST00000676978.1:ENST00000679289.1:ENST00000677493.1:ENST00000676644.1:ENST00000677757.1:ENST00000522761.6:ENST00000677909.1:ENST00000676827.1:ENST00000520177.6:ENST00000676634.1:ENST00000678854.1:ENST00000677602.1:ENST00000519832.1:ENST00000518726.5:ENST00000676911.1:ENST00000356245.8:ENST00000678646.1:ENST00000677381.1:ENST00000678904.1:ENST00000678910.1:ENST00000678101.1:ENST00000677105.1:ENST00000676813.1:ENST00000522367.6:ENST00000517947.5:ENST00000507878.7:ENST00000520006.2:ENST00000678369.1:ENST00000677433.1:ENST00000678564.1:ENST00000677252.1:ENST00000677369.1:ENST00000677284.1:ENST00000676894.1:ENST00000677923.1:ENST00000677323.1:ENST00000522666.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	29	2	2.40308	3.287445	4.17181	0.04531	0.0417732	0.161736	0.149888
chr6	109102566	109102665	2935464	0	+	0.323232	(0.32,0.35]	chr6	276349	19	INTRON	INTRON	CEP57L1	ENSG00000183137.15	ENST00000521277.5:ENST00000521737.5:ENST00000407272.5:ENST00000519286.5:ENST00000518329.5:ENST00000522461.5:ENST00000518853.5:ENST00000521522.5:ENST00000524064.5:ENST00000522608.5:ENST00000517392.6:ENST00000519407.5:ENST00000521503.5:ENST00000519095.5:ENST00000520610.5:ENST00000368968.6:ENST00000522490.5:ENST00000523209.5:ENST00000368970.6:ENST00000520883.5:ENST00000520761.1:ENST00000523787.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	29	2	2.40308	3.287445	4.17181	0.04531	0.0417732	0.161736	0.149888
chr10	74105453	74105553	4455597	0	+	0.37	(0.35,0.378]	chr10	411484	1	SS5_PROX	SS5_PROX:INTRON	VCL	ENSG00000035403.18	ENST00000623461.3:ENST00000372755.7:ENST00000624354.3:ENST00000211998.10:ENST00000472585.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	28	2	2.48657	3.2873650000000003	4.08816	0.046021	0.032907	0.149888	0.145164
chr13	27152891	27152991	5566377	0	-	0.37	(0.35,0.378]	chr13	532032	359	INTRON	INTRON	USP12	ENSG00000152484.14	ENST00000282344.11	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	2.48657	3.2873650000000003	4.08816	0.046021	0.032907	0.149888	0.145164
chr13	45370786	45370879	5480242	0	+	0.365591	(0.35,0.378]	chr13	525034	4	EXON_LNCRNA	EXON_LNCRNA:INTRON	TPT1-AS1	ENSG00000170919.16	ENST00000517509.5:ENST00000658870.1:ENST00000653307.1:ENST00000661180.1:ENST00000655984.1:ENST00000654229.1:ENST00000519454.6:ENST00000665586.1:ENST00000520590.5:ENST00000521336.6:ENST00000655666.1:ENST00000669281.1:ENST00000520622.6:ENST00000657761.1:ENST00000668209.1:ENST00000659577.1:ENST00000523506.6:ENST00000661291.1:ENST00000655385.1:ENST00000652823.1:ENST00000524062.5:ENST00000655124.1:ENST00000662212.1:ENST00000664881.1:ENST00000669627.1:ENST00000521507.5:ENST00000523445.5:ENST00000520310.6:ENST00000667948.1:ENST00000668256.1:ENST00000654626.1:ENST00000660680.1:ENST00000665079.1:ENST00000662614.1:ENST00000522845.2	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	1	28	2	2.48657	3.2873650000000003	4.08816	0.046021	0.032907	0.149888	0.145164
chr17	21024982	21025080	6742987	0	-	0.357143	(0.35,0.378]	chr17	662061	34	INTRON	INTRON	USP22	ENSG00000124422.12	ENST00000261497.9:ENST00000537526.6:ENST00000455117.6:ENST00000579645.5:ENST00000476111.5:ENST00000584538.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	28	2	2.48657	3.2873650000000003	4.08816	0.046021	0.032907	0.149888	0.145164
chr4	25845496	25845596	2120454	0	-	0.37	(0.35,0.378]	chr4	209468	98	INTRON	INTRON	SEL1L3	ENSG00000091490.11	ENST00000264868.9:ENST00000399878.8:ENST00000502949.5:ENST00000513364.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	28	2	2.48657	3.2873650000000003	4.08816	0.046021	0.032907	0.149888	0.145164
chr8	27832343	27832442	3927278	0	-	0.353535	(0.35,0.378]	chr8	359605	38	INTRON	INTRON	PBK	ENSG00000168078.10	ENST00000301905.9:ENST00000522944.5:ENST00000524266.1:ENST00000521226.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	28	2	2.48657	3.2873650000000003	4.08816	0.046021	0.032907	0.149888	0.145164
chr9	120785385	120785484	4335384	0	-	0.373737	(0.35,0.378]	chr9	398253	65	INTRON	INTRON	FBXW2	ENSG00000119402.18	ENST00000684405.1:ENST00000684001.1:ENST00000684047.1:ENST00000608872.6:ENST00000453291.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	28	2	2.48657	3.2873650000000003	4.08816	0.046021	0.032907	0.149888	0.145164
chr7	128595117	128595217	3408000	0	+	0.41	(0.408,0.44]	chr7	318364	27	INTRON	INTRON	ENSG00000280828:ENSG00000242588	ENSG00000280828.1:ENSG00000242588.6	ENST00000479267.2:ENST00000605862.5	lncRNA	lncRNA	lncRNA:unprocessed_pseudogene	lncRNA:unprocessed_pseudogene	3	79	2	2.94481	3.2872649999999997	3.62972	0.00110214	7.19047e-4	0.03038	0.0246202
chr2	169539550	169539650	1261347	0	-	0.48	(0.476,0.515]	chr2	133626	1	SS5_PROX	SS5_PROX:INTRON	FASTKD1	ENSG00000138399.18	ENST00000453153.7:ENST00000453929.6:ENST00000490590.5:ENST00000495505.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	78	2	2.96824	3.287255	3.60627	9.98194e-4	7.49088e-4	0.0290732	0.0251179
chr7	105355456	105355556	3603571	0	-	0.41	(0.408,0.44]	chr7	336161	485	INTRON	INTRON	SRPK2	ENSG00000135250.17	ENST00000393651.8:ENST00000482897.5:ENST00000460391.5:ENST00000462282.5:ENST00000465112.5:ENST00000482862.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	129	2	2.93869	3.287225	3.63576	2.73901e-4	4.93942e-5	0.0147448	0.00608708
chr1	156787474	156787574	232138	0	+	0.26	[0,0.28]	chr1	27493	3	SS5_PROX	SS5_PROX:INTRON	PRCC	ENSG00000143294.15	ENST00000491853.5:ENST00000271526.9:ENST00000526188.5:ENST00000454659.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	45	2	1.95356	3.2872000000000003	4.62084	0.0463152	0.0313633	0.166231	0.13151
chr2	168883153	168883253	1259713	0	-	0.24	[0,0.28]	chr2	133387	54	INTRON	INTRON	SPC25	ENSG00000152253.9	ENST00000479309.6:ENST00000282074.7:ENST00000472216.2:ENST00000451987.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	45	2	1.95356	3.2872000000000003	4.62084	0.0463152	0.0313633	0.166231	0.13151
chr1	29157982	29158081	410197	0	-	0.494949	(0.476,0.515]	chr1	49392	27	INTRON	INTRON	SRSF4	ENSG00000116350.18	ENST00000373795.7:ENST00000691479.1:ENST00000634348.1:ENST00000466448.4:ENST00000622143.1:ENST00000497015.5:ENST00000605204.1:ENST00000477193.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	36	2	2.13304	3.28716	4.44128	0.024866	0.0151924	0.132101	0.0994339
chr7	101966300	101966400	3367857	0	+	0.27	[0,0.28]	chr7	315233	63	INTRON	INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000497815.5:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000558469.5:ENST00000560541.5:ENST00000558836.5:ENST00000606749.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	39	2	2.49527	3.28714	4.07901	0.0494049	0.0436497	0.174117	0.14882
chr1	108781445	108781542	178602	0	+	0.371134	(0.35,0.378]	chr1	19423	22	EXON_LNCRNA	EXON_LNCRNA:INTRON	STXBP3	ENSG00000116266.11	ENST00000370008.4:ENST00000485167.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	45	2	1.58862	3.287115	4.98561	0.0615516	0.00474226	0.193423	0.0600445
chr14	21233155	21233254	5834800	0	-	0.272727	[0,0.28]	chr14	554441	17	INTRON	INTRON	HNRNPC	ENSG00000092199.19	ENST00000336053.10:ENST00000553300.6:ENST00000554969.5:ENST00000556142.5:ENST00000554455.5:ENST00000430246.6:ENST00000553753.5:ENST00000555309.5:ENST00000555914.5:ENST00000557442.5:ENST00000556628.5:ENST00000556513.5:ENST00000555883.5:ENST00000557201.5:ENST00000556897.5:ENST00000420743.6:ENST00000554539.5:ENST00000554383.5:ENST00000555215.5:ENST00000555137.5:ENST00000554891.5:ENST00000556226.5:ENST00000555176.5:ENST00000553614.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	46	2	2.10688	3.28707	4.46726	0.0427997	0.0307985	0.148082	0.143385
chr21	46279592	46279692	7471366	0	-	0.47	(0.44,0.476]	chr21	761690	2	SS5_PROX	SS5_PROX:INTRON	MCM3AP	ENSG00000160294.11	ENST00000397708.1:ENST00000291688.6	protein_coding	protein_coding	protein_coding	protein_coding	3	47	2	1.71574	3.2869550000000003	4.85817	0.045256	0.00223254	0.149888	0.0435144
chr2	171085541	171085640	1263343	0	-	0.292929	(0.28,0.32]	chr2	133909	23	INTRON	INTRON	TLK1	ENSG00000198586.14	ENST00000431350.7:ENST00000360843.7:ENST00000359766.7:ENST00000521943.5:ENST00000409443.6:ENST00000413010.5:ENST00000486857.5:ENST00000470340.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	57	2	1.47299	3.28684	5.10069	0.0597769	0.00610574	0.189982	0.0676501
chr1	160336192	160336285	572249	0	-	0.537634	(0.515,0.57]	chr1	69366	5	INTRON	INTRON	COPA	ENSG00000122218.17	ENST00000241704.8:ENST00000696204.1:ENST00000696203.1:ENST00000649963.1:ENST00000696208.1:ENST00000696207.1:ENST00000368069.7:ENST00000647693.1:ENST00000649787.1:ENST00000650154.1:ENST00000647799.1:ENST00000648805.1:ENST00000647683.1:ENST00000649231.1:ENST00000696209.1:ENST00000696210.1:ENST00000696211.1:ENST00000696212.1:ENST00000696214.1:ENST00000696213.1:ENST00000696215.1:ENST00000541366.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	51	2	3.2024	3.286825	3.37125	0.00322022	0.00136343	0.0507087	0.0339121
chr12	122518638	122518738	5442167	0	-	0.4	(0.378,0.408]	chr12	520575	4	SS5_PROX	SS5_PROX:INTRON	RSRC2	ENSG00000111011.18	ENST00000331738.12:ENST00000532695.5:ENST00000433877.6:ENST00000527173.6:ENST00000525335.6:ENST00000344591.8:ENST00000528263.1:ENST00000527399.3:ENST00000527796.6:ENST00000526560.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	61	2	3.05502	3.28681	3.5186	0.00689519	8.45009e-4	0.0717484	0.0263813
chr1	235448161	235448259	663878	0	-	0.357143	(0.35,0.378]	chr1	78564	11	UTR3	UTR3:EXON_MRNA	B3GALNT2	ENSG00000162885.14	ENST00000366600.8:ENST00000675193.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	191	2	2.67113	3.2868	3.90247	1.24966e-4	1.49465e-5	0.00954818	0.00310949
chr18	36159234	36159319	6891733	0	+	0.447059	(0.44,0.476]	chr18	683044	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ELP2	ENSG00000134759.14	ENST00000351393.10:ENST00000442325.6:ENST00000358232.11:ENST00000423854.6:ENST00000539560.5:ENST00000350494.10:ENST00000542824.5:ENST00000540799.1:ENST00000542050.5:ENST00000543861.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	38	2	2.44514	3.286785	4.12843	0.0337192	0.0087381	0.134145	0.0845538
chr5	72860908	72861007	2387570	0	+	0.474747	(0.44,0.476]	chr5	230378	46	INTRON	INTRON	TNPO1	ENSG00000083312.19	ENST00000680533.1:ENST00000520850.5:ENST00000337273.10:ENST00000680025.1:ENST00000523768.5:ENST00000681711.1:ENST00000518279.5:ENST00000679378.1:ENST00000513944.5:ENST00000506351.6:ENST00000506528.5:ENST00000511754.5:ENST00000509030.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	38	2	2.44514	3.286785	4.12843	0.0337192	0.0087381	0.134145	0.0845538
chr14	73100605	73100700	5784513	0	+	0.315789	(0.28,0.32]	chr14	547873	4	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RBM25	ENSG00000119707.14	ENST00000527432.5:ENST00000261973.12:ENST00000532683.5:ENST00000525321.5:ENST00000526754.5:ENST00000528081.5:ENST00000532192.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	184	2	2.95662	3.28654	3.61646	1.35675e-4	1.15374e-4	0.0100405	0.00968758
chr19	7928944	7929043	7130168	0	-	0.383838	(0.378,0.408]	chr19	718300	1	INTRON	INTRON	TIMM44	ENSG00000104980.8	ENST00000270538.8:ENST00000595565.5:ENST00000595831.5:ENST00000598968.5:ENST00000599650.1:ENST00000598481.1:ENST00000595876.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	83	2	3.23708	3.2865	3.33592	0.00365053	1.591e-4	0.0535094	0.0108481
chr6	34648682	34648781	3085737	0	-	0.323232	(0.32,0.35]	chr6	288685	15	INTRON	INTRON	ILRUN	ENSG00000196821.10	ENST00000374026.7:ENST00000374023.8:ENST00000374021.1	protein_coding	protein_coding	protein_coding	protein_coding	4	58	2	1.95408	3.2864850000000003	4.61889	0.0166646	0.0124054	0.102621	0.0973643
chr12	132770324	132770419	5449597	0	-	0.621053	(0.57,1]	chr12	521960	16	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	GOLGA3	ENSG00000090615.16	ENST00000204726.9:ENST00000450791.8:ENST00000693666.1:ENST00000690057.1:ENST00000688114.1:ENST00000687190.1:ENST00000690511.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	21	237	2	3.05137	3.28644	3.52151	4.90711e-8	2.40942e-8	8.81578e-5	5.79662e-5
chr8	56074446	56074510	3954755	0	-	0.546875	(0.515,0.57]	chr8	362733	2	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	RPS20	ENSG00000008988.11	ENST00000676461.1:ENST00000519807.5:ENST00000678039.1:ENST00000676918.1:ENST00000678683.1:ENST00000524349.5:ENST00000520627.1:ENST00000521262.5:ENST00000009589.8:ENST00000520490.1:ENST00000519606.5:ENST00000521289.5:ENST00000518875.5:ENST00000519369.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	104	1874	2	2.93242	3.28643	3.64044	1.09975e-8	3.79148e-10	3.58435e-5	2.669e-6
chr12	55915163	55915262	5333110	0	-	0.373737	(0.35,0.378]	chr12	509228	4	INTRON	INTRON	PYM1	ENSG00000170473.17	ENST00000408946.7:ENST00000398213.4:ENST00000302533.6:ENST00000557259.5:ENST00000547925.1:ENST00000549939.1:ENST00000454792.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	64	2	3.25549	3.286425	3.31736	0.00363602	0.00211072	0.0535085	0.0425419
chr9	120824220	120824311	4335561	0	-	0.340659	(0.32,0.35]	chr9	398288	2	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	PSMD5	ENSG00000095261.14	ENST00000373920.6:ENST00000210313.8:ENST00000373904.5:ENST00000373903.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	14	368	2	3.13057	3.28633	3.44209	1.60683e-5	1.33156e-6	0.00322239	6.78568e-4
chr1	207767359	207767441	305057	0	+	0.365854	(0.35,0.378]	chr1	35109	3	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CD46	ENSG00000117335.21	ENST00000695779.1:ENST00000695777.1:ENST00000695778.1:ENST00000496723.2:ENST00000695782.1:ENST00000695781.1:ENST00000695780.1:ENST00000636114.2:ENST00000367042.6:ENST00000322875.8:ENST00000322918.9:ENST00000354848.5:ENST00000357714.5:ENST00000358170.6:ENST00000367041.5:ENST00000367047.5:ENST00000695783.1:ENST00000695784.1:ENST00000469535.5:ENST00000360212.6:ENST00000480003.5:ENST00000695785.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	153	2	2.29213	3.28632	4.28051	6.83971e-4	3.99553e-5	0.0238173	0.00539487
chr15	28263669	28263765	6123464	0	-	0.302083	(0.28,0.32]	chr15	583335	1	INTRON	INTRON	HERC2	ENSG00000128731.18	ENST00000261609.13:ENST00000564734.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	41	2	1.83771	3.286225	4.73474	0.0591725	0.0162835	0.189982	0.101453
chr19	20640013	20640113	7157927	0	-	0.3	(0.28,0.32]	chr19	723625	140	INTRON	INTRON	ZNF626	ENSG00000188171.17	ENST00000601440.6:ENST00000595405.1	protein_coding	protein_coding	protein_coding	protein_coding	2	41	2	1.83771	3.286225	4.73474	0.0591725	0.0162835	0.189982	0.101453
chr4	18017133	18017233	2118253	0	-	0.29	(0.28,0.32]	chr4	209157	439	INTRON	INTRON	LCORL	ENSG00000178177.17	ENST00000635767.2:ENST00000326877.8:ENST00000675131.1:ENST00000675143.1:ENST00000637787.1:ENST00000675605.1:ENST00000510451.5:ENST00000675927.1:ENST00000382224.5:ENST00000382226.5:ENST00000676061.1:ENST00000674942.1:ENST00000512376.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	41	2	1.83771	3.286225	4.73474	0.0591725	0.0162835	0.189982	0.101453
chr7	140024288	140024378	3658843	0	-	0.311111	(0.28,0.32]	chr7	339550	7	UTR3	UTR3:EXON_MRNA	PARP12	ENSG00000059378.13	ENST00000263549.8:ENST00000473341.5:ENST00000488726.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	41	2	1.83771	3.286225	4.73474	0.0591725	0.0162835	0.189982	0.101453
chr19	11124834	11124933	7017192	0	+	0.484848	(0.476,0.515]	chr19	697502	11	INTRON	INTRON	LDLR	ENSG00000130164.14	ENST00000557933.5:ENST00000558518.6:ENST00000545707.5:ENST00000535915.5:ENST00000455727.6:ENST00000558013.5:ENST00000252444.9	protein_coding	protein_coding	protein_coding	protein_coding	17	371	2	2.73416	3.28618	3.8382	7.32966e-6	1.83163e-7	0.00192248	2.12011e-4
chr17	82448882	82448977	6853262	0	-	0.357895	(0.35,0.378]	chr17	679293	11	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	CYBC1	ENSG00000178927.18	ENST00000306645.10:ENST00000342572.12:ENST00000434650.6:ENST00000584024.5:ENST00000437807.6:ENST00000585044.5:ENST00000583617.5:ENST00000582725.5:ENST00000577436.5:ENST00000585064.5:ENST00000577732.5:ENST00000578919.5:ENST00000580560.5:ENST00000581196.5:ENST00000584503.5:ENST00000585080.5:ENST00000577888.5:ENST00000577707.5:ENST00000578913.5:ENST00000584891.5:ENST00000584408.5:ENST00000577696.5:ENST00000577471.5:ENST00000577834.5:ENST00000578941.5:ENST00000578064.1:ENST00000582395.5:ENST00000582608.5:ENST00000583359.1:ENST00000582545.2:ENST00000583778.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	65	2	3.16371	3.28611	3.40851	0.00383956	0.00205747	0.0562562	0.0409869
chr1	207688354	207688454	304384	0	+	0.35	(0.32,0.35]	chr1	35014	40	INTRON	INTRON	CR1L	ENSG00000197721.17	ENST00000508064.7:ENST00000530905.1:ENST00000294997.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	43	2	1.77704	3.2859299999999996	4.79482	0.0719969	0.00447781	0.187322	0.0610799
chr2	108541278	108541377	845914	0	+	0.383838	(0.378,0.408]	chr2	94661	63	INTRON	INTRON	LIMS1	ENSG00000169756.17	ENST00000695516.1:ENST00000544547.6:ENST00000695517.1	protein_coding	protein_coding	protein_coding	protein_coding	4	98	2	2.92764	3.285915	3.64419	7.25777e-4	3.01906e-4	0.0247646	0.0155054
chr6	7123574	7123674	2798521	0	+	0.5	(0.476,0.515]	chr6	263723	145	INTRON	INTRON	RREB1	ENSG00000124782.21	ENST00000379933.7:ENST00000491191.5:ENST00000471433.5:ENST00000379938.7:ENST00000467782.5:ENST00000349384.10:ENST00000334984.10:ENST00000475946.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	78	2	2.93046	3.2858650000000003	3.64127	0.00118985	6.42302e-4	0.031662	0.0231685
chr4	40099046	40099144	1954286	0	+	0.357143	(0.35,0.378]	chr4	195694	11	INTRON	INTRON	N4BP2	ENSG00000078177.14	ENST00000261435.11:ENST00000511480.5:ENST00000515550.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	46	2	1.92704	3.285805	4.64457	0.0228255	0.012652	0.125469	0.0926667
chr1	50461880	50461980	447252	0	-	0.35	(0.32,0.35]	chr1	54159	93	INTRON	INTRON	FAF1	ENSG00000185104.21	ENST00000396153.7:ENST00000494400.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	39	2	1.95271	3.2858	4.61889	0.0431213	0.0166646	0.162255	0.102621
chr3	197856639	197856738	1598390	0	+	0.434343	(0.408,0.44]	chr3	165643	18	INTRON	INTRON	LRCH3	ENSG00000186001.14	ENST00000438796.6:ENST00000428136.2:ENST00000425562.7:ENST00000441090.6:ENST00000414675.6:ENST00000334859.8:ENST00000461674.5:ENST00000452660.5:ENST00000433298.5:ENST00000481048.5:ENST00000466845.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	43	2	1.81759	3.285785	4.75398	0.0316273	0.00703931	0.144405	0.0718189
chr6	15296231	15296331	2823448	0	+	0.42	(0.408,0.44]	chr6	265190	469	INTRON	INTRON	JARID2	ENSG00000008083.14	ENST00000341776.7:ENST00000397311.4	protein_coding	protein_coding	protein_coding	protein_coding	3	43	2	1.81759	3.285785	4.75398	0.0316273	0.00703931	0.144405	0.0718189
chr19	5594478	5594578	7124061	0	-	0.56	(0.515,0.57]	chr19	716979	3	SS3_PROX	SS3_PROX:INTRON	SAFB2	ENSG00000130254.12	ENST00000252542.9	protein_coding	protein_coding	protein_coding	protein_coding	6	130	2	3.02733	3.285755	3.54418	1.80662e-4	4.9621e-6	0.0121878	0.00151644
chr1	25493379	25493478	48583	0	+	0.444444	(0.44,0.476]	chr1	5975	14	INTRON	INTRON	MACO1	ENSG00000204178.11	ENST00000399766.7:ENST00000374343.5:ENST00000647928.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	61	2	2.74063	3.285665	3.8307	0.0176095	1.81621e-4	0.105143	0.0117212
chr14	76314911	76315011	5797148	0	+	0.45	(0.44,0.476]	chr14	549230	36	INTRON	INTRON	ESRRB	ENSG00000119715.15	ENST00000512784.6	protein_coding	protein_coding	protein_coding	protein_coding	2	61	2	2.74063	3.285665	3.8307	0.0176095	1.81621e-4	0.105143	0.0117212
chr4	2549652	2549751	1912646	0	+	0.444444	(0.44,0.476]	chr4	191976	121	INTRON	INTRON	RNF4:FAM193A	ENSG00000063978.16:ENSG00000125386.16	ENST00000508235.1:ENST00000637812.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	61	2	2.74063	3.285665	3.8307	0.0176095	1.81621e-4	0.105143	0.0117212
chr5	126836453	126836547	2479785	0	+	0.340426	(0.32,0.35]	chr5	236767	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	LMNB1	ENSG00000113368.12	ENST00000460265.5:ENST00000261366.10:ENST00000504788.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	148	2	3.07097	3.285625	3.50028	1.699e-4	1.55472e-4	0.0113474	0.011325
chr10	63513842	63513942	4635872	0	-	0.47	(0.44,0.476]	chr10	426242	480	INTRON	INTRON	JMJD1C	ENSG00000171988.20	ENST00000633035.1	protein_coding	processed_transcript	protein_coding	processed_transcript	4	94	2	2.67227	3.28561	3.89895	0.0010793	2.02261e-4	0.0300133	0.0129814
chr19	21170282	21170382	7040244	0	+	0.36	(0.35,0.378]	chr19	701949	4	SS5_PROX	SS5_PROX:INTRON	ZNF431	ENSG00000196705.8	ENST00000600692.5:ENST00000599296.5:ENST00000594425.5:ENST00000311048.11:ENST00000598331.1	protein_coding	protein_coding	protein_coding	protein_coding	2	67	2	2.99173	3.285585	3.57944	0.00713365	0.0010429	0.0756118	0.0293983
chr6	132788856	132788953	3222726	0	-	0.350515	(0.35,0.378]	chr6	299630	9	INTRON	INTRON	SLC18B1	ENSG00000146409.12	ENST00000275227.9:ENST00000647932.1:ENST00000650278.1:ENST00000650136.1:ENST00000650298.1:ENST00000367918.1:ENST00000460518.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	60	2	1.71241	3.285555	4.8587	0.019274	0.00695662	0.119831	0.0718189
chr20	63875615	63875715	7300791	0	+	0.63	(0.57,1]	chr20	743103	4	SS3_PROX	SS3_PROX:INTRON	TPD52L2	ENSG00000101150.18	ENST00000611972.4:ENST00000615907.4:ENST00000369927.8:ENST00000346249.9:ENST00000348257.9:ENST00000352482.8:ENST00000351424.8:ENST00000217121.9:ENST00000358548.4	protein_coding	protein_coding	protein_coding	protein_coding	7	84	2	2.78638	3.28554	3.7847	5.50374e-5	4.51721e-6	0.00608953	0.00156754
chr20	35350869	35350969	7334584	0	-	0.48	(0.476,0.515]	chr20	747146	32	INTRON	INTRON	UQCC1	ENSG00000101019.22	ENST00000374380.6:ENST00000374394.7:ENST00000374384.6:ENST00000359226.6:ENST00000349714.9:ENST00000457259.5:ENST00000374385.10:ENST00000453855.5:ENST00000397556.7:ENST00000424405.5:ENST00000443429.5:ENST00000438533.5:ENST00000397554.5:ENST00000491125.5:ENST00000491040.5:ENST00000397553.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	60	2	2.82673	3.28553	3.74433	0.0134403	2.85053e-4	0.0946278	0.0150568
chr3	37295177	37295277	1396279	0	+	0.31	(0.28,0.32]	chr3	146362	1	SS5_PROX	SS5_PROX:INTRON	GOLGA4	ENSG00000144674.17	ENST00000435830.6:ENST00000444882.5:ENST00000356847.8:ENST00000450863.6:ENST00000361924.7:ENST00000429018.5:ENST00000437131.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	45	2	2.42868	3.28541	4.14214	0.0579756	0.0105331	0.167723	0.0908969
chr4	53435881	53435981	1960040	0	+	0.32	(0.28,0.32]	chr4	196458	73	INTRON	INTRON	FIP1L1	ENSG00000145216.16	ENST00000337488.11:ENST00000358575.9:ENST00000306932.10:ENST00000505125.5:ENST00000513975.5:ENST00000514543.5:ENST00000513008.5:ENST00000504094.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	45	2	2.42868	3.28541	4.14214	0.0579756	0.0105331	0.167723	0.0908969
chr1	236268575	236268675	665022	0	-	0.58	(0.57,1]	chr1	78733	36	EXON_MRNA	EXON_MRNA:INTRON	ERO1B	ENSG00000086619.15	ENST00000354619.10:ENST00000687487.1:ENST00000689343.1:ENST00000691519.1:ENST00000686625.1:ENST00000366589.1:ENST00000687604.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	28	2	2.07956	3.2853149999999998	4.49107	0.013114	0.00220544	0.0998629	0.0417893
chr7	151233113	151233213	3448976	0	+	0.59	(0.57,1]	chr7	322282	4	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	CHPF2	ENSG00000033100.17	ENST00000035307.7:ENST00000495645.5:ENST00000482173.6:ENST00000691224.1:ENST00000685322.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	28	2	2.07956	3.2853149999999998	4.49107	0.013114	0.00220544	0.0998629	0.0417893
chr1	61107271	61107371	127640	0	+	0.38	(0.378,0.408]	chr1	14770	187	EXON_MRNA	EXON_MRNA:INTRON	NFIA	ENSG00000162599.17	ENST00000371191.5:ENST00000664495.1:ENST00000476646.5:ENST00000407417.7:ENST00000479364.1:ENST00000371189.8:ENST00000670151.1:ENST00000664149.1:ENST00000662015.1:ENST00000403491.8:ENST00000371187.7:ENST00000485903.6:ENST00000371185.6:ENST00000371184.6:ENST00000603233.2:ENST00000496712.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	62	2	2.84663	3.2853000000000003	3.72397	0.0133954	3.23378e-4	0.0946278	0.0159645
chr1	167949605	167949705	248618	0	+	0.39	(0.378,0.408]	chr1	29536	120	INTRON	INTRON	DCAF6	ENSG00000143164.16	ENST00000450548.5:ENST00000470919.5:ENST00000432587.6:ENST00000367843.7:ENST00000470721.5:ENST00000367840.4:ENST00000312263.10:ENST00000455334.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	61	2	1.34117	3.285205	5.22924	0.0505568	0.00172721	0.17538	0.0374701
chr16	29921081	29921177	6471973	0	-	0.333333	(0.32,0.35]	chr16	625365	16	UTR3	UTR3:EXON_MRNA:INTRON	KCTD13	ENSG00000174943.11	ENST00000308768.9:ENST00000568000.6:ENST00000566842.5:ENST00000568995.1:ENST00000563264.1:ENST00000566413.1:ENST00000561540.2:ENST00000648037.1:ENST00000567795.3:ENST00000649581.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	69	2	3.18392	3.2850200000000003	3.38612	0.00379806	0.00249604	0.0562562	0.0446195
chr6	154773488	154773588	3002218	0	+	0.34	(0.32,0.35]	chr6	280738	1	SS3_PROX	SS3_PROX:INTRON	SCAF8	ENSG00000213079.10	ENST00000367186.7:ENST00000417268.3:ENST00000461219.5:ENST00000367178.8:ENST00000464628.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	125	2	2.6666	3.2848699999999997	3.90314	5.34642e-4	3.02468e-4	0.0209063	0.0160895
chr8	140752416	140752516	4077555	0	-	0.4	(0.378,0.408]	chr8	370428	1	SS3_PROX	SS3_PROX:INTRON	PTK2	ENSG00000169398.20	ENST00000696786.1:ENST00000522684.5:ENST00000395218.3:ENST00000519654.5:ENST00000521059.5:ENST00000517887.5:ENST00000519465.5:ENST00000519993.5:ENST00000340930.7:ENST00000523539.5:ENST00000519419.5:ENST00000524202.5:ENST00000521986.5:ENST00000521250.5:ENST00000521981.5:ENST00000521029.5:ENST00000520151.5:ENST00000523670.5:ENST00000519024.5:ENST00000523746.5:ENST00000523474.5:ENST00000519899.5:ENST00000519361.5:ENST00000520843.5:ENST00000521172.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	51	2	1.76	3.28484	4.80968	0.023484	0.00679828	0.128531	0.0711802
chr20	50951444	50951543	7356063	0	-	0.545455	(0.515,0.57]	chr20	750154	21	INTRON	INTRON	DPM1	ENSG00000000419.14	ENST00000371582.8:ENST00000466152.5:ENST00000683048.1:ENST00000371588.10:ENST00000371584.9:ENST00000683466.1:ENST00000681979.1:ENST00000684708.1:ENST00000413082.1:ENST00000682754.1:ENST00000683010.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	51	2	3.09002	3.284805	3.47959	0.00491099	8.38022e-4	0.0609494	0.0263691
chr11	47527771	47527870	4950149	0	-	0.50505	(0.476,0.515]	chr11	464246	31	INTRON	INTRON	CELF1	ENSG00000149187.19	ENST00000310513.10:ENST00000687097.1:ENST00000531165.5:ENST00000530151.5:ENST00000525841.5:ENST00000526419.1	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	2.13854	3.284735	4.43093	0.0776563	0.00931369	0.196285	0.0855292
chr11	74188272	74188372	4826691	0	+	0.5	(0.476,0.515]	chr11	450450	164	INTRON	INTRON	PPME1	ENSG00000214517.10	ENST00000542710.3:ENST00000328257.13:ENST00000398427.6:ENST00000544401.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	28	2	2.13854	3.284735	4.43093	0.0776563	0.00931369	0.196285	0.0855292
chr12	122476945	122477044	5441737	0	-	0.50505	(0.476,0.515]	chr12	520462	23	INTRON	INTRON	ZCCHC8	ENSG00000033030.15	ENST00000672018.1:ENST00000633063.3:ENST00000543897.5:ENST00000536306.5:ENST00000538116.5:ENST00000542892.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	28	2	2.13854	3.284735	4.43093	0.0776563	0.00931369	0.196285	0.0855292
chr17	27468321	27468421	6580884	0	+	0.5	(0.476,0.515]	chr17	639655	111	INTRON	INTRON	KSR1	ENSG00000141068.15	ENST00000644974.2:ENST00000579309.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	28	2	2.13854	3.284735	4.43093	0.0776563	0.00931369	0.196285	0.0855292
chr19	10192536	10192635	7134856	0	-	0.484848	(0.476,0.515]	chr19	719261	81	INTRON	INTRON	DNMT1	ENSG00000130816.17	ENST00000340748.8:ENST00000359526.9:ENST00000592705.5:ENST00000679103.1:ENST00000677634.1:ENST00000676820.1:ENST00000677250.1:ENST00000677013.1:ENST00000677685.1:ENST00000676610.1:ENST00000678804.1:ENST00000679313.1:ENST00000677946.1:ENST00000586988.5:ENST00000588952.5:ENST00000588118.5:ENST00000592342.5:ENST00000592054.5:ENST00000586800.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	28	2	2.13854	3.284735	4.43093	0.0776563	0.00931369	0.196285	0.0855292
chr3	21577888	21577988	1387687	0	+	0.48	(0.476,0.515]	chr3	145351	345	INTRON	INTRON	ZNF385D-AS1	ENSG00000225542.2	ENST00000662195.1:ENST00000412369.1	lncRNA	lncRNA	lncRNA	lncRNA	1	28	2	2.13854	3.284735	4.43093	0.0776563	0.00931369	0.196285	0.0855292
chr3	57679020	57679119	1706862	0	-	0.515152	(0.476,0.515]	chr3	176061	62	INTRON	INTRON	DENND6A	ENSG00000174839.13	ENST00000311128.10:ENST00000464875.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	28	2	2.13854	3.284735	4.43093	0.0776563	0.00931369	0.196285	0.0855292
chr3	57691981	57692081	1706992	0	-	0.49	(0.476,0.515]	chr3	176061	192	INTRON	INTRON	DENND6A	ENSG00000174839.13	ENST00000311128.10:ENST00000464875.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	28	2	2.13854	3.284735	4.43093	0.0776563	0.00931369	0.196285	0.0855292
chr4	2481610	2481710	1911949	0	+	0.48	(0.476,0.515]	chr4	191917	4	SS5_PROX	SS5_PROX:INTRON	RNF4	ENSG00000063978.16	ENST00000503659.5:ENST00000504224.5:ENST00000541204.5:ENST00000502316.5:ENST00000509388.5:ENST00000507247.5:ENST00000314289.13:ENST00000511843.5:ENST00000509258.5:ENST00000513284.5:ENST00000504782.5:ENST00000507784.5:ENST00000513578.5:ENST00000511859.5:ENST00000511892.5:ENST00000513643.5:ENST00000503123.5:ENST00000509206.1:ENST00000506706.5:ENST00000511600.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	28	2	2.13854	3.284735	4.43093	0.0776563	0.00931369	0.196285	0.0855292
chr7	76501888	76501969	3340308	0	+	0.481481	(0.476,0.515]	chr7	311135	1	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	DTX2	ENSG00000091073.20	ENST00000324432.9:ENST00000430490.7:ENST00000446600.5:ENST00000413936.6:ENST00000446820.6:ENST00000467729.5:ENST00000435251.2:ENST00000479915.5:ENST00000468546.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	28	2	2.13854	3.284735	4.43093	0.0776563	0.00931369	0.196285	0.0855292
chr16	58598635	58598735	6496068	0	-	0.39	(0.378,0.408]	chr16	628630	94	INTRON	INTRON	CNOT1	ENSG00000125107.19	ENST00000317147.10:ENST00000569240.5:ENST00000567188.5:ENST00000441024.6:ENST00000565605.5:ENST00000564557.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	115	2	2.95788	3.2847299999999997	3.61158	8.34292e-4	8.6542e-5	0.0266389	0.00783027
chr1	38013863	38013963	74278	0	+	0.5	(0.476,0.515]	chr1	9592	6	INTRON	INTRON	UTP11	ENSG00000183520.12	ENST00000483182.5:ENST00000373014.5:ENST00000486563.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	147	2	1.70009	3.2846	4.86911	0.0109107	7.92014e-7	0.0923273	5.43864e-4
chr11	86000045	86000142	5014134	0	-	0.28866000000000003	(0.28,0.32]	chr11	472953	28	INTRON	INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000630913.2:ENST00000529760.5:ENST00000528398.5:ENST00000356360.9:ENST00000529016.5:ENST00000530542.1	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	2.53522	3.284335	4.03345	0.0704058	0.0310424	0.184298	0.143457
chr14	22907832	22907932	5841497	0	-	0.31	(0.28,0.32]	chr14	555171	1	SS5_PROX	SS5_PROX:INTRON	RBM23	ENSG00000100461.18	ENST00000359890.8:ENST00000555209.5:ENST00000399922.6:ENST00000557667.5:ENST00000346528.9:ENST00000542016.6:ENST00000307814.10:ENST00000557403.5:ENST00000555722.5:ENST00000553920.5:ENST00000557227.5:ENST00000555714.5:ENST00000554256.5:ENST00000556687.5:ENST00000553902.5:ENST00000554955.5:ENST00000556984.5:ENST00000557549.5:ENST00000555676.5:ENST00000557571.5:ENST00000556862.5:ENST00000557464.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	31	2	2.53522	3.284335	4.03345	0.0704058	0.0310424	0.184298	0.143457
chr2	73766301	73766317	1156220	0	-	0.3125	(0.28,0.32]	chr2	123606	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DUSP11	ENSG00000144048.11	ENST00000696050.1:ENST00000696051.1:ENST00000272444.8:ENST00000696052.1:ENST00000696053.1:ENST00000696054.1:ENST00000696055.1:ENST00000696056.1:ENST00000480948.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	31	2	2.53522	3.284335	4.03345	0.0704058	0.0310424	0.184298	0.143457
chr2	171033882	171033981	1262814	0	-	0.292929	(0.28,0.32]	chr2	133843	51	INTRON	INTRON	TLK1	ENSG00000198586.14	ENST00000431350.7:ENST00000360843.7:ENST00000359766.7:ENST00000521943.5:ENST00000434911.6:ENST00000409443.6:ENST00000413010.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	31	2	2.53522	3.284335	4.03345	0.0704058	0.0310424	0.184298	0.143457
chr8	25441173	25441269	3926171	0	-	0.291667	(0.28,0.32]	chr8	359437	1	INTRON	INTRON	KCTD9	ENSG00000104756.16	ENST00000221200.9:ENST00000519665.5:ENST00000523140.5:ENST00000522493.5:ENST00000518067.5:ENST00000518997.5:ENST00000523294.5:ENST00000521458.5:ENST00000524217.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	31	2	2.53522	3.284335	4.03345	0.0704058	0.0310424	0.184298	0.143457
chr8	38293137	38293236	3936513	0	-	0.292929	(0.28,0.32]	chr8	360735	21	INTRON	INTRON	NSD3	ENSG00000147548.17	ENST00000317025.13:ENST00000433384.6:ENST00000527502.5	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	2.53522	3.284335	4.03345	0.0704058	0.0310424	0.184298	0.143457
chr11	9302796	9302896	4909318	0	-	0.41	(0.408,0.44]	chr11	460162	27	INTRON	INTRON	TMEM41B	ENSG00000166471.11	ENST00000524543.5:ENST00000528080.6:ENST00000299596.8:ENST00000611268.4:ENST00000527813.5:ENST00000533723.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	38	2	2.44674	3.2843050000000003	4.12187	0.0354689	0.00868283	0.137535	0.0842798
chr17	21621699	21621799	6578370	0	+	0.43	(0.408,0.44]	chr17	639543	68	INTRON	INTRON	ENSG00000260157	ENSG00000260157.3	ENST00000618784.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	2	38	2	2.44674	3.2843050000000003	4.12187	0.0354689	0.00868283	0.137535	0.0842798
chr9	34192579	34192678	4111405	0	+	0.434343	(0.408,0.44]	chr9	374720	8	INTRON	INTRON	UBAP1	ENSG00000165006.14	ENST00000625521.2:ENST00000379186.8:ENST00000297661.9:ENST00000626262.2	protein_coding	protein_coding	protein_coding	protein_coding	4	95	2	2.93869	3.284205	3.62972	7.19047e-4	2.73901e-4	0.0246202	0.0147448
chr17	30770563	30770662	6590200	0	+	0.393939	(0.378,0.408]	chr17	640888	2	INTRON	INTRON	SUZ12P1	ENSG00000264538.7	ENST00000578195.6:ENST00000582329.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	19	477	2	3.24806	3.2841250000000004	3.32019	1.27647e-6	2.54623e-7	7.32609e-4	2.46133e-4
chr18	9123578	9123677	6868808	0	+	0.464646	(0.44,0.476]	chr18	680531	5	INTRON	INTRON	NDUFV2	ENSG00000178127.13	ENST00000318388.11:ENST00000400033.1:ENST00000465096.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	168	2	2.08356	3.2841199999999997	4.48468	0.00502853	7.8213e-8	0.0619934	1.21354e-4
chr5	95756459	95756558	2431499	0	+	0.313131	(0.28,0.32]	chr5	233666	3	INTRON	INTRON	RHOBTB3	ENSG00000164292.13	ENST00000379982.8:ENST00000502541.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	74	2	3.26551	3.28407	3.30263	0.0038504	0.0030714	0.0542786	0.0509893
chr12	112083318	112083417	5415168	0	-	0.474747	(0.44,0.476]	chr12	517230	18	INTRON	INTRON	NAA25	ENSG00000111300.10	ENST00000261745.9:ENST00000552527.5:ENST00000549711.5:ENST00000551858.1:ENST00000547133.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	59	2	3.25801	3.28406	3.31011	0.00259023	0.00248185	0.0460771	0.0452934
chr15	25407066	25407164	6121512	0	-	0.459184	(0.44,0.476]	chr15	582900	1	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	UBE3A	ENSG00000114062.22	ENST00000648336.2:ENST00000438097.6:ENST00000635914.1:ENST00000638155.1:ENST00000637886.1:ENST00000638011.1:ENST00000649550.1:ENST00000650110.1:ENST00000630424.2:ENST00000566215.5:ENST00000428984.6:ENST00000675177.1:ENST00000675593.1:ENST00000625778.3:ENST00000675000.1:ENST00000626793.2:ENST00000628733.2:ENST00000630907.2:ENST00000675038.1:ENST00000630607.2:ENST00000629886.2:ENST00000628267.2:ENST00000629252.2:ENST00000628890.1:ENST00000625681.2:ENST00000626589.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	55	2	1.54104	3.284035	5.02703	0.0339289	0.00278015	0.146815	0.0469265
chr11	32916789	32916888	4764951	0	+	0.555556	(0.515,0.57]	chr11	440609	231	INTRON	INTRON	QSER1	ENSG00000060749.16	ENST00000650167.2:ENST00000399302.7:ENST00000527250.5	protein_coding	protein_coding	protein_coding	protein_coding	3	68	2	2.82994	3.284015	3.73809	0.00168661	3.11298e-4	0.0381778	0.0162055
chr22	20394757	20394853	7479080	0	+	0.46875	(0.44,0.476]	chr22	762908	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ZNF74	ENSG00000185252.19	ENST00000611540.4:ENST00000403682.7:ENST00000400451.7:ENST00000357502.5:ENST00000493734.5:ENST00000420626.1:ENST00000437275.5:ENST00000405993.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	67	2	1.38315	3.2839799999999997	5.18481	0.0472692	6.21872e-4	0.152795	0.0223951
chr12	110296233	110296314	5226250	0	+	0.45679	(0.44,0.476]	chr12	495241	4	EXON_LNCRNA	EXON_LNCRNA:SS3_PROX:INTRON	ATP2A2	ENSG00000174437.18	ENST00000552636.2:ENST00000308664.10:ENST00000539276.7:ENST00000377685.9:ENST00000548169.2:ENST00000550248.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	56	2	1.66775	3.283875	4.9	0.0219883	0.00423315	0.123836	0.0572185
chr1	43772451	43772545	86736	0	+	0.382979	(0.378,0.408]	chr1	11657	5	UTR3	UTR3:EXON_MRNA:INTRON	ST3GAL3	ENSG00000126091.21	ENST00000646096.1:ENST00000532911.6:ENST00000643597.1:ENST00000643886.1:ENST00000372372.7:ENST00000545417.5:ENST00000330208.6:ENST00000335430.10:ENST00000361400.9:ENST00000347631.8:ENST00000642331.1:ENST00000647237.1:ENST00000643252.1:ENST00000372374.7:ENST00000361392.9:ENST00000646109.1:ENST00000533997.6:ENST00000353126.8:ENST00000645640.1:ENST00000642934.1:ENST00000643283.1:ENST00000351035.8:ENST00000642949.1:ENST00000489897.6:ENST00000646971.1:ENST00000645142.1:ENST00000645705.1:ENST00000530154.5:ENST00000646027.1:ENST00000646069.1:ENST00000642504.1:ENST00000647148.1:ENST00000262915.8:ENST00000479383.6:ENST00000647482.1:ENST00000645394.1:ENST00000647128.1:ENST00000484868.2:ENST00000461066.6:ENST00000361746.9:ENST00000645034.1:ENST00000645165.1:ENST00000647134.1:ENST00000644195.1:ENST00000642194.1:ENST00000372368.7:ENST00000646686.1:ENST00000372366.6:ENST00000361812.9:ENST00000469715.6:ENST00000372369.5:ENST00000372367.5:ENST00000372365.5:ENST00000528371.5:ENST00000533212.5:ENST00000530581.5:ENST00000531816.1:ENST00000531993.6:ENST00000490541.6:ENST00000372362.6:ENST00000531451.5:ENST00000646416.1:ENST00000645117.1:ENST00000533933.6:ENST00000332628.11:ENST00000643813.1:ENST00000644922.1:ENST00000644287.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	31	2	2.60296	3.283835	3.96471	0.032421	0.0267851	0.145026	0.123349
chr12	779338	779437	5056445	0	+	0.242424	[0,0.28]	chr12	477423	247	INTRON	INTRON	WNK1	ENSG00000060237.19	ENST00000315939.11:ENST00000340908.9:ENST00000535572.5:ENST00000537687.5:ENST00000530271.6:ENST00000447667.2	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	2.36637	3.283715	4.20106	0.0695895	0.0500615	0.184298	0.17488
chr12	42399988	42400087	5118980	0	+	0.272727	[0,0.28]	chr12	482987	11	EXON_MRNA	EXON_MRNA:INTRON	PPHLN1	ENSG00000134283.18	ENST00000549190.5:ENST00000337898.10:ENST00000395580.7:ENST00000610488.4:ENST00000619544.4:ENST00000613154.4:ENST00000395568.6:ENST00000256678.12:ENST00000358314.12:ENST00000449194.6:ENST00000552761.5:ENST00000317560.13:ENST00000432191.6:ENST00000547440.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	33	2	2.36637	3.283715	4.20106	0.0695895	0.0500615	0.184298	0.17488
chr12	102074256	102074353	5399512	0	-	0.216495	[0,0.28]	chr12	515073	13	UTR3	UTR3:EXON_MRNA	NUP37	ENSG00000075188.9	ENST00000552283.6:ENST00000546385.5:ENST00000251074.5:ENST00000547269.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	33	2	2.36637	3.283715	4.20106	0.0695895	0.0500615	0.184298	0.17488
chr15	27131586	27131686	5983759	0	+	0.24	[0,0.28]	chr15	569164	1044	INTRON	INTRON	GABRG3	ENSG00000182256.13	ENST00000615808.5:ENST00000555083.5	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	2.36637	3.283715	4.20106	0.0695895	0.0500615	0.184298	0.17488
chr2	131063076	131063176	1228787	0	-	0.28	[0,0.28]	chr2	130981	70	INTRON	INTRON	FAM168B	ENSG00000152102.18	ENST00000389915.4:ENST00000409185.5	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	2.36637	3.283715	4.20106	0.0695895	0.0500615	0.184298	0.17488
chr2	174170988	174171088	1270077	0	-	0.22	[0,0.28]	chr2	134282	286	INTRON	INTRON	OLA1	ENSG00000138430.16	ENST00000284719.8:ENST00000344357.9:ENST00000428402.6:ENST00000409546.5:ENST00000429575.1	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	2.36637	3.283715	4.20106	0.0695895	0.0500615	0.184298	0.17488
chr20	21357535	21357635	7248704	0	+	0.24	[0,0.28]	chr20	735988	4	SS3_PROX	SS3_PROX:INTRON	XRN2	ENSG00000088930.8	ENST00000377191.5	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	2.36637	3.283715	4.20106	0.0695895	0.0500615	0.184298	0.17488
chr21	44960866	44960966	7417670	0	+	0.24	[0,0.28]	chr21	756231	3	INTRON	INTRON	SLX9	ENSG00000160256.13	ENST00000397826.7:ENST00000458015.1:ENST00000291634.11:ENST00000479127.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	33	2	2.36637	3.283715	4.20106	0.0695895	0.0500615	0.184298	0.17488
chr3	158543709	158543803	1542631	0	+	0.276596	[0,0.28]	chr3	160342	3	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RSRC1	ENSG00000174891.14	ENST00000480820.5:ENST00000295930.7:ENST00000683733.1:ENST00000682221.1:ENST00000482822.3:ENST00000476899.6:ENST00000464171.5:ENST00000611884.5:ENST00000682164.1:ENST00000684604.1:ENST00000683899.1:ENST00000682500.1:ENST00000312179.10:ENST00000475278.6:ENST00000480119.5:ENST00000683137.1:ENST00000684353.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	33	2	2.36637	3.283715	4.20106	0.0695895	0.0500615	0.184298	0.17488
chr3	172300383	172300483	1562167	0	+	0.27	[0,0.28]	chr3	161600	12	INTRON	INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000469491.5:ENST00000336824.8:ENST00000416957.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	33	2	2.36637	3.283715	4.20106	0.0695895	0.0500615	0.184298	0.17488
chr4	766533	766632	2093263	0	-	0.232323	[0,0.28]	chr4	206820	4	EXON_LNCRNA	EXON_LNCRNA:INTRON	ENSG00000249592	ENSG00000249592.7	ENST00000660016.1:ENST00000665579.1:ENST00000503571.5:ENST00000652800.1	lncRNA	lncRNA	lncRNA	lncRNA	1	33	2	2.36637	3.283715	4.20106	0.0695895	0.0500615	0.184298	0.17488
chr8	17982439	17982539	3708359	0	+	0.26	[0,0.28]	chr8	343954	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	PCM1	ENSG00000078674.19	ENST00000325083.13:ENST00000519253.5:ENST00000524226.5:ENST00000522275.5:ENST00000522998.1:ENST00000522777.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	33	2	2.36637	3.283715	4.20106	0.0695895	0.0500615	0.184298	0.17488
chr16	88729044	88729142	6539628	0	-	0.591837	(0.57,1]	chr16	633912	10	INTRON	INTRON	PIEZO1	ENSG00000103335.22	ENST00000301015.14	protein_coding	protein_coding	protein_coding	protein_coding	4	51	2	2.81549	3.28357	3.75165	3.90081e-4	1.54884e-4	0.0177751	0.0113252
chr17	40246403	40246502	6609735	0	+	0.464646	(0.44,0.476]	chr17	643734	255	INTRON	INTRON	WIPF2	ENSG00000171475.14	ENST00000323571.9:ENST00000583268.1:ENST00000494757.5:ENST00000582781.5:ENST00000585043.5:ENST00000394103.7:ENST00000583130.5:ENST00000584296.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	29	2	2.46135	3.2833750000000004	4.1054	0.0374637	0.0220205	0.140008	0.123836
chr19	38846915	38847015	7180815	0	-	0.47	(0.44,0.476]	chr19	725892	2	SS5_PROX	SS5_PROX:INTRON	HNRNPL	ENSG00000104824.18	ENST00000221419.10:ENST00000647557.1:ENST00000388749.7:ENST00000601449.5:ENST00000600873.5:ENST00000598985.5:ENST00000601047.5:ENST00000600233.5:ENST00000601813.1:ENST00000600741.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	29	2	2.46135	3.2833750000000004	4.1054	0.0374637	0.0220205	0.140008	0.123836
chr2	177356774	177356874	1276793	0	-	0.45	(0.44,0.476]	chr2	134794	79	INTRON	INTRON	NFE2L2:ENSG00000213963	ENSG00000116044.16:ENSG00000213963.6	ENST00000464747.5:ENST00000397057.6:ENST00000456746.5:ENST00000447413.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	1	29	2	2.46135	3.2833750000000004	4.1054	0.0374637	0.0220205	0.140008	0.123836
chr6	20629809	20629908	2829339	0	+	0.464646	(0.44,0.476]	chr6	265649	703	INTRON	INTRON	CDKAL1	ENSG00000145996.11	ENST00000274695.8:ENST00000378610.1	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	2.46135	3.2833750000000004	4.1054	0.0374637	0.0220205	0.140008	0.123836
chr9	135936843	135936940	4372311	0	-	0.443299	(0.44,0.476]	chr9	402502	30	INTRON	INTRON	UBAC1	ENSG00000130560.9	ENST00000371756.4:ENST00000489050.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	242	2	2.5857	3.28335	3.981	1.27708e-4	3.1696e-7	0.0102682	2.82994e-4
chr12	53441840	53441929	5142824	0	+	0.449438	(0.44,0.476]	chr12	485350	1	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	PRR13	ENSG00000205352.11	ENST00000549924.5:ENST00000551003.5:ENST00000429243.7:ENST00000552846.1:ENST00000549068.5:ENST00000549740.5:ENST00000546581.5:ENST00000549581.5:ENST00000547368.5:ENST00000379786.8:ENST00000551945.5:ENST00000551365.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	49	2	1.60176	3.283335	4.96491	0.0389597	0.0034249	0.160861	0.0517761
chr7	107060458	107060558	3377323	0	+	0.29	(0.28,0.32]	chr7	316240	149	INTRON	INTRON	PRKAR2B	ENSG00000005249.13	ENST00000265717.5	protein_coding	protein_coding	protein_coding	protein_coding	3	50	2	1.76378	3.283165	4.80255	0.0395495	0.0137406	0.161534	0.0949306
chr5	116152670	116152770	2456814	0	+	0.36	(0.35,0.378]	chr5	235517	181	INTRON	INTRON	COMMD10	ENSG00000145781.9	ENST00000507356.5:ENST00000274458.9:ENST00000632434.1:ENST00000515539.5:ENST00000506589.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	41	2	1.81767	3.2831349999999997	4.7486	0.0640429	0.00418965	0.177882	0.0591344
chr11	119099761	119099861	5046767	0	-	0.39	(0.378,0.408]	chr11	476006	1	SS5_PROX	SS5_PROX:INTRON	DPAGT1	ENSG00000172269.20	ENST00000682232.1:ENST00000409993.6:ENST00000392834.7:ENST00000354202.9:ENST00000481084.5:ENST00000461999.1:ENST00000530052.2:ENST00000682652.1:ENST00000683955.1:ENST00000684345.1:ENST00000683373.1:ENST00000682192.1:ENST00000683143.1:ENST00000682791.1:ENST00000682946.1:ENST00000682811.1:ENST00000683567.1:ENST00000683558.1:ENST00000682517.1:ENST00000684315.1:ENST00000684682.1:ENST00000682326.1:ENST00000684499.1:ENST00000684252.1:ENST00000682691.1:ENST00000684142.1:ENST00000684255.1:ENST00000445653.6:ENST00000682191.1:ENST00000414373.5:ENST00000682665.1:ENST00000639704.1:ENST00000636404.1:ENST00000638850.1:ENST00000640747.1:ENST00000682883.1:ENST00000682404.1:ENST00000442480.1:ENST00000640102.1:ENST00000525456.5:ENST00000533687.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	27	2	2.45932	3.282965	4.10661	0.0399023	0.0346754	0.148144	0.143072
chr15	64243511	64243611	6203693	0	-	0.38	(0.378,0.408]	chr15	591722	264	INTRON	INTRON	CSNK1G1:ENSG00000259316	ENSG00000169118.18:ENSG00000259316.12	ENST00000303052.13:ENST00000607537.6:ENST00000561349.6:ENST00000635142.1:ENST00000634654.1:ENST00000634811.1:ENST00000606225.1:ENST00000606793.3:ENST00000634251.1:ENST00000634847.3:ENST00000635324.1:ENST00000635270.1:ENST00000635529.1:ENST00000634318.1:ENST00000635514.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	27	2	2.45932	3.282965	4.10661	0.0399023	0.0346754	0.148144	0.143072
chr15	72554671	72554770	6059967	0	+	0.383838	(0.378,0.408]	chr15	576870	94	INTRON	INTRON	ARIH1	ENSG00000166233.15	ENST00000379887.9:ENST00000570085.5:ENST00000564062.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	27	2	2.45932	3.282965	4.10661	0.0399023	0.0346754	0.148144	0.143072
chr16	23866818	23866918	6324067	0	+	0.39	(0.378,0.408]	chr16	605693	291	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000498058.1:ENST00000645517.1:ENST00000498739.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	27	2	2.45932	3.282965	4.10661	0.0399023	0.0346754	0.148144	0.143072
chr16	30309145	30309245	6473108	0	-	0.38	(0.378,0.408]	chr16	625713	28	INTRON	INTRON	SMG1P5	ENSG00000183604.15	ENST00000529428.5:ENST00000411546.4:ENST00000691460.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	1	27	2	2.45932	3.282965	4.10661	0.0399023	0.0346754	0.148144	0.143072
chr19	8454604	8454704	7010860	0	+	0.39	(0.378,0.408]	chr19	696137	91	INTRON	INTRON	HNRNPM	ENSG00000099783.12	ENST00000348943.7:ENST00000597813.5:ENST00000600092.5:ENST00000325495.9:ENST00000600806.5:ENST00000620401.4:ENST00000594907.5:ENST00000596984.5:ENST00000601645.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	27	2	2.45932	3.282965	4.10661	0.0399023	0.0346754	0.148144	0.143072
chr19	24092912	24093011	7044466	0	+	0.383838	(0.378,0.408]	chr19	702396	5	INTRON	INTRON	ZNF254	ENSG00000213096.11	ENST00000613065.4:ENST00000611359.3:ENST00000616028.2:ENST00000594886.5:ENST00000339642.10:ENST00000357002.5:ENST00000595187.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	27	2	2.45932	3.282965	4.10661	0.0399023	0.0346754	0.148144	0.143072
chr2	37197350	37197450	745390	0	+	0.39	(0.378,0.408]	chr2	85345	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	CEBPZOS	ENSG00000218739.10	ENST00000397064.6:ENST00000470216.1:ENST00000402297.6:ENST00000406711.5:ENST00000392061.6:ENST00000397226.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	27	2	2.45932	3.282965	4.10661	0.0399023	0.0346754	0.148144	0.143072
chr4	17930311	17930411	2117376	0	-	0.39	(0.378,0.408]	chr4	209129	206	INTRON	INTRON	LCORL	ENSG00000178177.17	ENST00000635767.2:ENST00000326877.8:ENST00000675131.1:ENST00000675143.1:ENST00000637787.1:ENST00000675605.1:ENST00000510451.5:ENST00000510121.5:ENST00000675927.1:ENST00000382224.5:ENST00000382226.5:ENST00000676061.1:ENST00000674942.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	27	2	2.45932	3.282965	4.10661	0.0399023	0.0346754	0.148144	0.143072
chr4	55410614	55410714	1960737	0	+	0.4	(0.378,0.408]	chr4	196553	69	INTRON	INTRON	TMEM165	ENSG00000134851.13	ENST00000381334.10:ENST00000506198.5:ENST00000508404.5:ENST00000511710.1:ENST00000502797.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	27	2	2.45932	3.282965	4.10661	0.0399023	0.0346754	0.148144	0.143072
chr6	7121378	7121478	2798499	0	+	0.4	(0.378,0.408]	chr6	263723	123	INTRON	INTRON	RREB1	ENSG00000124782.21	ENST00000379933.7:ENST00000491191.5:ENST00000471433.5:ENST00000379938.7:ENST00000467782.5:ENST00000349384.10:ENST00000334984.10:ENST00000475946.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	27	2	2.45932	3.282965	4.10661	0.0399023	0.0346754	0.148144	0.143072
chr9	134030702	134030801	4370587	0	-	0.383838	(0.378,0.408]	chr9	402258	5	UTR3	UTR3:EXON_MRNA	BRD3	ENSG00000169925.17	ENST00000303407.12	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	2.45932	3.282965	4.10661	0.0399023	0.0346754	0.148144	0.143072
chrX	118349475	118349574	7707141	0	+	0.393939	(0.378,0.408]	chrX	788534	25	INTRON	INTRON	WDR44	ENSG00000131725.14	ENST00000371822.9:ENST00000254029.8:ENST00000371825.7:ENST00000493448.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	27	2	2.45932	3.282965	4.10661	0.0399023	0.0346754	0.148144	0.143072
chr1	145934517	145934616	540826	0	-	0.535354	(0.515,0.57]	chr1	63432	12	UTR3	UTR3:EXON_MRNA	LIX1L	ENSG00000271601.4	ENST00000604000.4	protein_coding	protein_coding	protein_coding	protein_coding	1	26	2	2.52504	3.2829500000000005	4.04086	0.029342	0.0197045	0.128055	0.120063
chr17	79838402	79838456	6846889	0	-	0.537037	(0.515,0.57]	chr17	677652	1	INTRON	INTRON	CBX4	ENSG00000141582.15	ENST00000269397.9:ENST00000448310.1:ENST00000494546.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	26	2	2.52504	3.2829500000000005	4.04086	0.029342	0.0197045	0.128055	0.120063
chr22	30404269	30404369	7576698	0	-	0.55	(0.515,0.57]	chr22	775161	156	INTRON	INTRON	RNF215	ENSG00000099999.15	ENST00000431544.2	protein_coding	protein_coding	protein_coding	protein_coding	1	26	2	2.52504	3.2829500000000005	4.04086	0.029342	0.0197045	0.128055	0.120063
chr6	7132357	7132457	2798609	0	+	0.53	(0.515,0.57]	chr6	263723	233	INTRON	INTRON	RREB1	ENSG00000124782.21	ENST00000379933.7:ENST00000491191.5:ENST00000471433.5:ENST00000379938.7:ENST00000467782.5:ENST00000349384.10:ENST00000334984.10:ENST00000475946.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	26	2	2.52504	3.2829500000000005	4.04086	0.029342	0.0197045	0.128055	0.120063
chr6	33649302	33649401	2847559	0	+	0.545455	(0.515,0.57]	chr6	268791	84	INTRON	INTRON	ITPR3	ENSG00000096433.11	ENST00000374316.9:ENST00000605930.3	protein_coding	protein_coding	protein_coding	protein_coding	1	26	2	2.52504	3.2829500000000005	4.04086	0.029342	0.0197045	0.128055	0.120063
chr6	156853407	156853507	3007917	0	+	0.56	(0.515,0.57]	chr6	281100	236	INTRON	INTRON	ARID1B	ENSG00000049618.24	ENST00000346085.10:ENST00000636930.2:ENST00000647938.1:ENST00000350026.10:ENST00000674298.1:ENST00000674190.1:ENST00000636748.1:ENST00000494260.2:ENST00000636607.1:ENST00000414678.7:ENST00000638000.1:ENST00000636205.1:ENST00000637532.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	26	2	2.52504	3.2829500000000005	4.04086	0.029342	0.0197045	0.128055	0.120063
chrX	101021554	101021641	7854970	0	-	0.517241	(0.515,0.57]	chrX	800788	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TRMT2B	ENSG00000188917.15	ENST00000545398.5:ENST00000372936.4:ENST00000372939.5:ENST00000372935.5	protein_coding	protein_coding	protein_coding	protein_coding	1	26	2	2.52504	3.2829500000000005	4.04086	0.029342	0.0197045	0.128055	0.120063
chrX	153454784	153454876	7910238	0	-	0.565217	(0.515,0.57]	chrX	804963	4	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HAUS7	ENSG00000213397.12	ENST00000370211.10:ENST00000484394.5:ENST00000435662.1:ENST00000460898.5:ENST00000437046.6:ENST00000491286.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	26	2	2.52504	3.2829500000000005	4.04086	0.029342	0.0197045	0.128055	0.120063
chr15	68188130	68188229	6057311	0	+	0.292929	(0.28,0.32]	chr15	576638	4	UTR3	UTR3:EXON_MRNA	PIAS1	ENSG00000033800.14	ENST00000249636.11:ENST00000563996.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	34	2	2.32871	3.28295	4.23719	0.0581621	0.0264147	0.167723	0.133676
chr2	131685647	131685741	867852	0	+	0.319149	(0.28,0.32]	chr2	97485	9	EXON_LNCRNA	EXON_LNCRNA:SS3_PROX:INTRON	C2orf27A	ENSG00000287151.1	ENST00000652878.1:ENST00000657415.1:ENST00000666411.1:ENST00000653458.1:ENST00000655714.1	lncRNA	lncRNA	lncRNA	lncRNA	1	34	2	2.32871	3.28295	4.23719	0.0581621	0.0264147	0.167723	0.133676
chr16	23896251	23896351	6324363	0	+	0.27	[0,0.28]	chr16	605701	25	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000498739.1	protein_coding	protein_coding	protein_coding	protein_coding	3	116	2	2.33825	3.2827450000000002	4.22724	0.0195228	5.69854e-5	0.109483	0.00617188
chr16	2257485	2257583	6431585	0	-	0.408163	(0.378,0.408]	chr16	618786	19	EXON_MRNA	EXON_MRNA:INTRON	RNPS1	ENSG00000205937.12	ENST00000397086.6:ENST00000566458.5:ENST00000320225.10:ENST00000566397.5:ENST00000565678.5:ENST00000561718.5:ENST00000568631.5:ENST00000569598.6:ENST00000301730.12:ENST00000567147.5:ENST00000565243.2:ENST00000565870.5:ENST00000561518.5:ENST00000564311.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	181	2	2.75921	3.282475	3.80574	6.53036e-5	2.16486e-5	0.00669181	0.00379246
chr7	100309722	100309822	3586505	0	-	0.43	(0.408,0.44]	chr7	334330	86	INTRON	INTRON	PMS2P1	ENSG00000078319.11	ENST00000685724.1:ENST00000692351.1:ENST00000685541.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	5	127	2	2.81829	3.2823900000000004	3.74649	7.33803e-4	1.36138e-5	0.0249226	0.00275678
chr10	37829925	37830022	4602318	0	-	0.43299	(0.408,0.44]	chr10	423968	13	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	ZNF248	ENSG00000198105.16	ENST00000615949.6:ENST00000485560.5:ENST00000395867.8:ENST00000357328.8:ENST00000611278.4:ENST00000494133.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	59	2	3.05705	3.28218	3.50731	0.00658331	8.5918e-4	0.0701901	0.0265787
chr4	2553945	2554045	1912689	0	+	0.44	(0.408,0.44]	chr4	191976	164	INTRON	INTRON	RNF4:FAM193A	ENSG00000063978.16:ENSG00000125386.16	ENST00000508235.1:ENST00000637812.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	59	2	3.05705	3.28218	3.50731	0.00658331	8.5918e-4	0.0701901	0.0265787
chr1	35951060	35951160	71344	0	+	0.52	(0.515,0.57]	chr1	9138	48	INTRON	INTRON	AGO3	ENSG00000126070.20	ENST00000324350.9:ENST00000397828.3:ENST00000634486.1:ENST00000373191.9:ENST00000246314.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	105	2	2.39323	3.28213	4.17103	9.69503e-4	2.07632e-5	0.0283066	0.00353137
chr17	28063066	28063166	6582725	0	+	0.41	(0.408,0.44]	chr17	639837	11	INTRON	INTRON	NLK	ENSG00000087095.13	ENST00000407008.8:ENST00000496808.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	59	2	3.20034	3.2820600000000004	3.36378	0.00398025	0.0016048	0.0549214	0.0367961
chr5	53921521	53921621	2617019	0	-	0.43	(0.408,0.44]	chr5	248835	95	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	59	2	3.20034	3.2820600000000004	3.36378	0.00398025	0.0016048	0.0549214	0.0367961
chr7	11069657	11069757	3283569	0	+	0.48	(0.476,0.515]	chr7	304989	67	INTRON	INTRON	PHF14	ENSG00000106443.17	ENST00000642461.1:ENST00000634607.2:ENST00000403050.7:ENST00000521747.5:ENST00000423760.6:ENST00000481418.5:ENST00000470665.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	38	2	1.86492	3.28205	4.69918	0.0550347	0.00400966	0.165463	0.057767
chrX	3824033	3824133	7746817	0	-	0.5	(0.476,0.515]	chrX	793068	4	SS5_PROX	SS5_PROX:INTRON	ENSG00000285756	ENSG00000285756.2	ENST00000648217.1:ENST00000425492.5:ENST00000662024.1:ENST00000490920.2:ENST00000475317.5:ENST00000483854.6:ENST00000653447.1:ENST00000669937.1:ENST00000469903.5:ENST00000471090.5:ENST00000671495.1:ENST00000486571.1	lncRNA	lncRNA	lncRNA	lncRNA	2	38	2	1.86492	3.28205	4.69918	0.0550347	0.00400966	0.165463	0.057767
chr1	231561455	231561555	337936	0	+	0.37	(0.35,0.378]	chr1	39333	2	SS5_PROX	SS5_PROX:INTRON	TSNAX	ENSG00000116918.15	ENST00000366639.9:ENST00000475168.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	38	2	2.17079	3.2819100000000003	4.39303	0.0237246	0.0225978	0.124921	0.118716
chr4	122985079	122985179	2036259	0	+	0.33	(0.32,0.35]	chr4	202352	53	INTRON	INTRON	SPATA5	ENSG00000145375.9	ENST00000675612.1:ENST00000274008.5:ENST00000674886.1:ENST00000422835.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	92	2	2.84076	3.2817600000000002	3.72276	0.0027933	3.96144e-4	0.0469265	0.0178616
chr12	124845689	124845789	5446403	0	-	0.54	(0.515,0.57]	chr12	521285	276	INTRON	INTRON	SCARB1	ENSG00000073060.17	ENST00000339570.9:ENST00000261693.11:ENST00000679605.1:ENST00000681686.1:ENST00000680926.1:ENST00000680556.1:ENST00000680982.1:ENST00000680596.1:ENST00000415380.6:ENST00000681117.1:ENST00000538291.5:ENST00000546215.5:ENST00000535005.5:ENST00000539320.3:ENST00000545493.1:ENST00000541661.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	41	2	1.49871	3.28165	5.06459	0.0770828	6.03964e-4	0.196285	0.0223465
chr10	48417257	48417357	4432102	0	+	0.38	(0.378,0.408]	chr10	408600	67	INTRON	INTRON	MAPK8	ENSG00000107643.17	ENST00000395611.7:ENST00000374189.6:ENST00000429041.6:ENST00000374179.8:ENST00000360332.7:ENST00000374182.7:ENST00000374176.8:ENST00000374174.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	44	2	2.35103	3.281645	4.21226	0.0177403	0.014158	0.11319	0.0959618
chr1	33021066	33021166	416694	0	-	0.52	(0.515,0.57]	chr1	50336	3	SS5_PROX	SS5_PROX:INTRON	AK2	ENSG00000004455.18	ENST00000373449.7:ENST00000672715.1:ENST00000695598.1:ENST00000550338.6:ENST00000695599.1:ENST00000354858.11:ENST00000695600.1:ENST00000695601.1:ENST00000491241.2:ENST00000695602.1:ENST00000469238.2:ENST00000695603.1:ENST00000695604.1:ENST00000672308.1:ENST00000548033.5:ENST00000467905.5:ENST00000480134.5:ENST00000466029.1:ENST00000695605.1:ENST00000673291.1:ENST00000487289.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	41	2	1.56681	3.28158	4.99635	0.064862	8.06602e-4	0.179394	0.0258804
chr1	47307088	47307187	446041	0	-	0.434343	(0.408,0.44]	chr1	54067	17	INTRON	INTRON	STIL	ENSG00000123473.17	ENST00000360380.7:ENST00000371877.8:ENST00000337817.10:ENST00000682977.1:ENST00000396221.6:ENST00000447475.7:ENST00000436811.2	protein_coding	protein_coding	protein_coding	protein_coding	5	55	2	1.54273	3.2815049999999997	5.02028	0.0337312	0.00303216	0.146709	0.0493883
chr1	202775511	202775604	620418	0	-	0.354839	(0.35,0.378]	chr1	73658	4	INTRON	INTRON	KDM5B	ENSG00000117139.18	ENST00000367265.9:ENST00000648338.1:ENST00000649542.1:ENST00000647757.1:ENST00000367264.7:ENST00000648473.1:ENST00000650569.1:ENST00000648056.1:ENST00000649770.1:ENST00000648469.1:ENST00000650417.1:ENST00000235790.9:ENST00000650422.1:ENST00000648738.1:ENST00000648958.1:ENST00000602511.1:ENST00000650368.1:ENST00000649200.1:ENST00000648354.1:ENST00000650493.1:ENST00000470573.5:ENST00000467487.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	30	2	2.1617	3.28149	4.40128	0.0771502	0.0120289	0.196285	0.0962115
chr20	34604767	34604867	7330414	0	-	0.36	(0.35,0.378]	chr20	746633	158	INTRON	INTRON	PIGU	ENSG00000101464.11	ENST00000217446.8:ENST00000374820.6:ENST00000438215.1:ENST00000480175.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	30	2	2.1617	3.28149	4.40128	0.0771502	0.0120289	0.196285	0.0962115
chr2	187540423	187540523	1289385	0	-	0.29	(0.28,0.32]	chr2	135621	106	INTRON	INTRON	TFPI	ENSG00000003436.16	ENST00000233156.9:ENST00000409676.5:ENST00000339091.8:ENST00000421427.5:ENST00000437725.5:ENST00000453013.5:ENST00000417013.5:ENST00000420747.1	protein_coding	protein_coding	protein_coding	protein_coding	5	73	2	1.3645	3.28146	5.19842	0.0687143	0.00152333	0.184298	0.0360297
chr16	85578241	85578341	6415614	0	+	0.55	(0.515,0.57]	chr16	615470	215	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	3	71	2	3.19161	3.28143	3.37125	0.00136343	3.49295e-4	0.0339121	0.017404
chr19	2903136	2903235	6998171	0	+	0.424242	(0.408,0.44]	chr19	693925	17	INTRON	INTRON	ZNF57	ENSG00000171970.14	ENST00000306908.10	protein_coding	protein_coding	protein_coding	protein_coding	2	39	2	1.94273	3.28141	4.62009	0.0456237	0.00504155	0.149888	0.0646039
chr17	21635908	21636007	6578513	0	+	0.282828	(0.28,0.32]	chr17	639549	27	INTRON	INTRON	ENSG00000260157	ENSG00000260157.3	ENST00000618784.1:ENST00000562547.3	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	2	42	2	2.13651	3.2814050000000003	4.4263	0.0330296	0.0265696	0.134088	0.133816
chr22	17964925	17965025	7550074	0	-	0.6	(0.57,1]	chr22	771756	577	INTRON	INTRON	MICAL3	ENSG00000243156.9	ENST00000441493.7:ENST00000672019.1:ENST00000495076.5:ENST00000424046.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	43	2	2.9315	3.28137	3.63124	9.1984e-4	2.87208e-4	0.0278396	0.0150568
chr12	98545858	98545958	5198935	0	+	0.49	(0.476,0.515]	chr12	491835	1	SS3_PROX	SS3_PROX:INTRON	TMPO	ENSG00000120802.14	ENST00000556029.6:ENST00000343315.9:ENST00000393053.6:ENST00000556678.1:ENST00000548223.5:ENST00000551987.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	28	2	2.23335	3.28125	4.32915	0.0634557	0.0124637	0.177047	0.0973643
chr12	121260542	121260620	5436325	0	-	0.487179	(0.476,0.515]	chr12	519777	1	SS3_PROX	SS3_PROX:INTRON	CAMKK2	ENSG00000110931.19	ENST00000652382.1:ENST00000392474.6:ENST00000404169.8:ENST00000324774.9:ENST00000347034.6:ENST00000538733.5:ENST00000337174.7:ENST00000412367.6:ENST00000402834.8:ENST00000392473.2:ENST00000446440.6:ENST00000535524.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	28	2	2.23335	3.28125	4.32915	0.0634557	0.0124637	0.177047	0.0973643
chr13	112699601	112699701	5546346	0	+	0.5	(0.476,0.515]	chr13	529917	23	INTRON	INTRON	ATP11A	ENSG00000068650.19	ENST00000375645.8:ENST00000375630.6:ENST00000487903.5:ENST00000419448.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	28	2	2.23335	3.28125	4.32915	0.0634557	0.0124637	0.177047	0.0973643
chr18	46213111	46213211	6899472	0	+	0.49	(0.476,0.515]	chr18	683605	384	INTRON	INTRON	C18orf25	ENSG00000152242.11	ENST00000588730.1:ENST00000587591.5:ENST00000619230.1:ENST00000615052.5:ENST00000619301.4:ENST00000615553.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	28	2	2.23335	3.28125	4.32915	0.0634557	0.0124637	0.177047	0.0973643
chr19	21113622	21113721	7039834	0	+	0.484848	(0.476,0.515]	chr19	701903	36	INTRON	INTRON	ZNF714	ENSG00000160352.16	ENST00000616183.1:ENST00000596053.5:ENST00000618422.1:ENST00000456283.7:ENST00000613286.4:ENST00000425625.5:ENST00000618008.4:ENST00000610902.4:ENST00000620627.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	28	2	2.23335	3.28125	4.32915	0.0634557	0.0124637	0.177047	0.0973643
chr20	17981884	17981984	7243343	0	+	0.48	(0.476,0.515]	chr20	735422	56	INTRON	INTRON	MGME1	ENSG00000125871.14	ENST00000377710.10:ENST00000377709.1:ENST00000377704.4:ENST00000463219.1:ENST00000467391.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	28	2	2.23335	3.28125	4.32915	0.0634557	0.0124637	0.177047	0.0973643
chr20	21303873	21303973	7248142	0	+	0.5	(0.476,0.515]	chr20	735884	4	SS5_PROX	SS5_PROX:INTRON	XRN2	ENSG00000088930.8	ENST00000377191.5	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	2.23335	3.28125	4.32915	0.0634557	0.0124637	0.177047	0.0973643
chr21	34107155	34107254	7401431	0	+	0.515152	(0.476,0.515]	chr21	753975	10	INTRON	INTRON	MRPS6	ENSG00000243927.6	ENST00000488492.5:ENST00000477091.5:ENST00000399312.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	28	2	2.23335	3.28125	4.32915	0.0634557	0.0124637	0.177047	0.0973643
chr3	138201621	138201721	1514095	0	+	0.49	(0.476,0.515]	chr3	158295	127	INTRON	INTRON	ARMC8	ENSG00000114098.18	ENST00000538260.5:ENST00000481646.5:ENST00000469044.6:ENST00000491704.5:ENST00000461600.5:ENST00000466749.5:ENST00000358441.6:ENST00000489213.5:ENST00000461822.5:ENST00000485396.5:ENST00000471453.5:ENST00000470821.5:ENST00000471709.5:ENST00000463485.5:ENST00000468560.1	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	2.23335	3.28125	4.32915	0.0634557	0.0124637	0.177047	0.0973643
chr10	71841994	71842094	4642747	0	-	0.35	(0.32,0.35]	chr10	427176	71	INTRON	INTRON	PSAP	ENSG00000197746.15	ENST00000394936.8	protein_coding	protein_coding	protein_coding	protein_coding	2	43	2	2.49929	3.2811399999999997	4.06299	0.0559439	0.00776612	0.165463	0.0787356
chr7	127926262	127926362	3405160	0	+	0.34	(0.32,0.35]	chr7	318161	211	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000465900.5:ENST00000486037.1:ENST00000484767.5:ENST00000492840.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	43	2	2.49929	3.2811399999999997	4.06299	0.0559439	0.00776612	0.165463	0.0787356
chr16	31876201	31876301	6341828	0	+	0.42	(0.408,0.44]	chr16	608552	5	INTRON	INTRON	ZNF267	ENSG00000185947.15	ENST00000300870.15:ENST00000394846.7:ENST00000566541.5:ENST00000561814.1:ENST00000562971.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	81	2	3.0101	3.2811250000000003	3.55215	0.00109848	7.01039e-4	0.0304585	0.0241881
chr6	57160583	57160657	2878784	0	+	0.513514	(0.476,0.515]	chr6	273320	1	SS3_PROX	SS3_PROX:INTRON	ZNF451	ENSG00000112200.17	ENST00000357489.7:ENST00000370706.9:ENST00000504603.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	56	2	1.65426	3.280935	4.90761	0.0231344	0.00386428	0.126939	0.0542786
chr1	154247071	154247169	227800	0	+	0.367347	(0.35,0.378]	chr1	26287	3	INTRON	INTRON	UBAP2L	ENSG00000143569.19	ENST00000343815.10:ENST00000271877.11:ENST00000613315.4:ENST00000428931.6:ENST00000361546.6:ENST00000466173.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	86	2	2.56071	3.2808399999999995	4.00097	0.00725312	8.64759e-5	0.072984	0.00783027
chr7	50610648	50610748	3530828	0	-	0.41	(0.408,0.44]	chr7	329409	37	INTRON	INTRON	GRB10	ENSG00000106070.20	ENST00000335866.7:ENST00000398812.6:ENST00000398810.6:ENST00000401949.6:ENST00000402578.5:ENST00000644769.1:ENST00000403097.6:ENST00000644879.1:ENST00000406641.5:ENST00000402497.6:ENST00000357271.9:ENST00000643299.1:ENST00000407526.6:ENST00000645075.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	49	2	1.60344	3.280805	4.95817	0.0387506	0.00372419	0.160156	0.0535094
chr15	34436341	34436434	6133254	0	-	0.537634	(0.515,0.57]	chr15	584292	5	INTRON	INTRON	GOLGA8A	ENSG00000175265.18	ENST00000359187.5:ENST00000569781.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	36	2	2.27238	3.280795	4.28921	0.0161808	0.00990051	0.101453	0.0877296
chr20	32800482	32800566	7257068	0	+	0.52381	(0.515,0.57]	chr20	737213	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DNMT3B	ENSG00000088305.19	ENST00000696232.1:ENST00000328111.6:ENST00000696231.1:ENST00000348286.6:ENST00000353855.6:ENST00000696233.1:ENST00000443239.7:ENST00000696235.1:ENST00000456297.6:ENST00000201963.3:ENST00000696238.1:ENST00000696239.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	36	2	2.27238	3.280795	4.28921	0.0161808	0.00990051	0.101453	0.0877296
chr4	55397973	55398068	1960608	0	+	0.505263	(0.476,0.515]	chr4	196542	7	INTRON	INTRON	TMEM165	ENSG00000134851.13	ENST00000381334.10:ENST00000506198.5:ENST00000508404.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	144	2	2.55527	3.280615	4.00596	1.33326e-4	1.1409e-4	0.00996366	0.00960783
chr16	89894637	89894737	6422656	0	+	0.52	(0.515,0.57]	chr16	616767	2	SS3_PROX	SS3_PROX:INTRON	TCF25	ENSG00000141002.20	ENST00000640279.1:ENST00000263347.11:ENST00000263346.13:ENST00000568412.5:ENST00000566751.5:ENST00000562256.5:ENST00000568409.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	38	720	2	2.82317	3.2806100000000002	3.73805	2.28782e-7	2.05421e-9	2.29746e-4	8.86366e-6
chr2	148019508	148019607	1242765	0	-	0.525253	(0.515,0.57]	chr2	131884	371	INTRON	INTRON	ORC4	ENSG00000115947.14	ENST00000392857.10:ENST00000264169.6:ENST00000536575.5:ENST00000535373.5:ENST00000540442.5:ENST00000461711.5:ENST00000490200.5:ENST00000416719.5:ENST00000457954.5:ENST00000440042.1:ENST00000495601.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	108	2	3.27972	3.2805850000000003	3.28145	2.1933e-4	2.94964e-5	0.0135522	0.00431591
chr8	43063011	43063109	3745915	0	+	0.479592	(0.476,0.515]	chr8	348521	35	INTRON	INTRON	FNTA	ENSG00000168522.13	ENST00000533559.5:ENST00000526755.5:ENST00000302279.8:ENST00000527153.5:ENST00000533383.5:ENST00000533998.5:ENST00000524546.5:ENST00000531266.5:ENST00000533368.1:ENST00000525699.5:ENST00000529687.5:ENST00000533336.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	15	351	2	3.26323	3.2805400000000002	3.29785	3.58636e-6	3.67107e-7	0.0013551	3.10278e-4
chr21	44118463	44118562	7416126	0	+	0.525253	(0.515,0.57]	chr21	755956	1	SS3_PROX	SS3_PROX:INTRON	PWP2	ENSG00000241945.8	ENST00000291576.12	protein_coding	protein_coding	protein_coding	protein_coding	2	51	2	3.25412	3.280385	3.30665	0.00224554	0.00213226	0.0435144	0.041756
chr1	1115075	1115175	358803	0	-	0.42	(0.408,0.44]	chr1	41379	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	C1orf159	ENSG00000131591.18	ENST00000379339.5:ENST00000379325.7:ENST00000421241.7:ENST00000467751.5:ENST00000477196.5:ENST00000434641.5:ENST00000482816.5:ENST00000462097.5:ENST00000475119.5:ENST00000472741.5:ENST00000480643.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	127	2	3.04238	3.280335	3.51829	1.54233e-4	9.30234e-5	0.0106835	0.00857086
chr1	160277394	160277492	571620	0	-	0.397959	(0.378,0.408]	chr1	69184	7	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	PEX19	ENSG00000162735.19	ENST00000368072.10:ENST00000472750.5:ENST00000467711.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	29	2	2.13703	3.28026	4.42349	0.0797592	0.00992961	0.19979	0.0877296
chr10	29453073	29453173	4415222	0	+	0.4	(0.378,0.408]	chr10	407249	308	INTRON	INTRON	SVIL-AS1	ENSG00000224597.11	ENST00000430295.5:ENST00000684815.1:ENST00000413405.6:ENST00000646086.2:ENST00000423223.6:ENST00000414457.6:ENST00000686070.1:ENST00000687838.1:ENST00000445521.6:ENST00000686207.1:ENST00000446807.5:ENST00000438202.5:ENST00000455774.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	1	29	2	2.13703	3.28026	4.42349	0.0797592	0.00992961	0.19979	0.0877296
chr10	45928864	45928964	4608225	0	-	0.39	(0.378,0.408]	chr10	424479	123	INTRON	INTRON	PARGP1	ENSG00000239883.9	ENST00000688192.1:ENST00000686367.1:ENST00000693310.1:ENST00000417555.2:ENST00000687844.1:ENST00000687550.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	1	29	2	2.13703	3.28026	4.42349	0.0797592	0.00992961	0.19979	0.0877296
chr17	32366564	32366664	6598153	0	+	0.33	(0.32,0.35]	chr17	641927	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	ZNF207	ENSG00000010244.19	ENST00000321233.10:ENST00000394673.6:ENST00000394670.9:ENST00000342555.10:ENST00000577908.5:ENST00000581531.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	61	2	1.54135	3.28026	5.01917	0.0353776	0.0055659	0.150752	0.0648867
chr17	32820141	32820240	6756544	0	-	0.383838	(0.378,0.408]	chr17	664073	255	INTRON	INTRON	MYO1D	ENSG00000176658.17	ENST00000318217.10:ENST00000394649.8:ENST00000579584.5:ENST00000583621.1	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	2.13703	3.28026	4.42349	0.0797592	0.00992961	0.19979	0.0877296
chr6	35881130	35881230	3088417	0	-	0.4	(0.378,0.408]	chr6	288860	64	INTRON	INTRON	SRPK1	ENSG00000096063.16	ENST00000373825.7:ENST00000423325.6:ENST00000346162.10:ENST00000361690.7:ENST00000510290.5:ENST00000373821.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	29	2	2.13703	3.28026	4.42349	0.0797592	0.00992961	0.19979	0.0877296
chr9	32997295	32997348	4242735	0	-	0.396226	(0.378,0.408]	chr9	389992	2	UTR5	UTR5:EXON_MRNA:INTRON	APTX	ENSG00000137074.20	ENST00000672846.1:ENST00000672519.1:ENST00000672244.1:ENST00000673416.1:ENST00000673360.1:ENST00000379825.7:ENST00000379817.7:ENST00000397172.8:ENST00000494649.5:ENST00000436040.7:ENST00000472896.6:ENST00000465003.6:ENST00000479656.6:ENST00000673487.1:ENST00000467331.6:ENST00000482687.6:ENST00000483148.6:ENST00000672438.1:ENST00000485479.6:ENST00000673598.1:ENST00000460940.6:ENST00000309615.8:ENST00000379819.6:ENST00000672286.1:ENST00000673248.1:ENST00000474658.7:ENST00000495360.6:ENST00000672281.1:ENST00000476858.6:ENST00000672535.1:ENST00000463596.6:ENST00000379813.7:ENST00000468275.6:ENST00000477119.2:ENST00000671912.1:ENST00000464632.6:ENST00000478279.6:ENST00000480031.6:ENST00000460945.6:ENST00000494973.1:ENST00000672553.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	29	2	2.13703	3.28026	4.42349	0.0797592	0.00992961	0.19979	0.0877296
chr7	110950520	110950620	3617984	0	-	0.21	[0,0.28]	chr7	337084	635	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000487733.5:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	37	2	2.27119	3.28017	4.28915	0.070351	0.0319595	0.184298	0.14477
chr9	123539878	123539978	4342106	0	-	0.21	[0,0.28]	chr9	399056	780	INTRON	INTRON	DENND1A	ENSG00000119522.17	ENST00000373624.6:ENST00000473039.5:ENST00000394215.7:ENST00000373620.7:ENST00000491650.5:ENST00000497135.5:ENST00000373618.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	37	2	2.27119	3.28017	4.28915	0.070351	0.0319595	0.184298	0.14477
chr6	143441797	143441887	3242280	0	-	0.388889	(0.378,0.408]	chr6	301154	5	UTR5	UTR5:EXON_MRNA:INTRON	ADAT2	ENSG00000189007.16	ENST00000237283.9:ENST00000606514.5	protein_coding	protein_coding	protein_coding	protein_coding	9	197	2	2.39979	3.2800399999999996	4.16029	3.45766e-4	2.66667e-6	0.0165457	0.00115411
chr4	67511125	67511225	2153163	0	-	0.34	(0.32,0.35]	chr4	211966	1	SS3_PROX	SS3_PROX:INTRON	CENPC	ENSG00000145241.11	ENST00000273853.11:ENST00000513216.5:ENST00000506882.5:ENST00000510189.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	69	2	1.60034	3.280025	4.95971	0.0221816	0.00663522	0.124191	0.0703181
chr12	9443334	9443434	5265119	0	-	0.46	(0.44,0.476]	chr12	501929	4	SS5_PROX	SS5_PROX:INTRON	DDX12P	ENSG00000214826.5	ENST00000432996.2	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	5	107	2	2.47437	3.2799050000000003	4.08544	0.00117531	7.98065e-5	0.0316592	0.00801397
chr3	47780803	47780902	1685067	0	-	0.292929	(0.28,0.32]	chr3	172122	75	INTRON	INTRON	SMARCC1	ENSG00000173473.11	ENST00000254480.10:ENST00000425518.5:ENST00000454240.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	162	2	2.6285	3.27983	3.93116	0.00255625	8.60656e-6	0.0449775	0.00211106
chr13	98455039	98455134	5642558	0	-	0.389474	(0.378,0.408]	chr13	537436	15	INTRON	INTRON	STK24	ENSG00000102572.15	ENST00000539966.6:ENST00000397517.6:ENST00000376554.8:ENST00000376547.7	protein_coding	protein_coding	protein_coding	protein_coding	2	36	2	1.89621	3.279795	4.66338	0.0488044	0.0103469	0.173377	0.0850389
chr19	21407723	21407821	7040930	0	+	0.27551	[0,0.28]	chr19	702031	3	UTR3	UTR3:EXON_MRNA:INTRON	ZNF493	ENSG00000196268.12	ENST00000596302.5:ENST00000392288.7:ENST00000355504.4:ENST00000594390.5:ENST00000339914.6:ENST00000598152.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	55	2	1.79953	3.279585	4.75964	0.0377477	0.0232081	0.156608	0.118148
chr13	95117200	95117300	5638012	0	-	0.42	(0.408,0.44]	chr13	537056	8	INTRON	INTRON	ABCC4	ENSG00000125257.16	ENST00000645237.2:ENST00000643051.1:ENST00000643842.1:ENST00000646439.1:ENST00000644880.1:ENST00000643816.1:ENST00000536256.3:ENST00000643556.1:ENST00000629385.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	106	2	2.95088	3.27958	3.60828	0.00142252	3.18952e-5	0.0340865	0.00450719
chr16	3676430	3676516	6434053	0	-	0.639535	(0.57,1]	chr16	619329	1	EXON_LNCRNA	EXON_LNCRNA:SS3_PROX:INTRON	TRAP1	ENSG00000126602.11	ENST00000246957.10:ENST00000538171.5:ENST00000575671.5:ENST00000573872.5:ENST00000576335.5:ENST00000574175.1:ENST00000575854.5:ENST00000576788.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	82	2	2.96471	3.279315	3.59392	1.58729e-4	1.87266e-6	0.0108333	9.28079e-4
chr5	109344089	109344189	2701703	0	-	0.21	[0,0.28]	chr5	254314	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	PJA2	ENSG00000198961.10	ENST00000361557.4:ENST00000361189.7	protein_coding	protein_coding	protein_coding	protein_coding	10	298	2	2.80892	3.2790850000000002	3.74925	9.97367e-5	5.51356e-5	0.00903429	0.00608953
chr8	143470741	143470840	4082336	0	-	0.434343	(0.408,0.44]	chr8	370883	17	INTRON	INTRON	ZC3H3	ENSG00000014164.7	ENST00000262577.6	protein_coding	protein_coding	protein_coding	protein_coding	2	59	2	3.00595	3.27905	3.55215	0.00781452	7.01039e-4	0.0759016	0.0241881
chrX	78123874	78123973	7687224	0	+	0.414141	(0.408,0.44]	chrX	787034	1	INTRON	INTRON	PGK1	ENSG00000102144.15	ENST00000644362.1:ENST00000373316.5	protein_coding	protein_coding	protein_coding	protein_coding	2	59	2	3.00595	3.27905	3.55215	0.00781452	7.01039e-4	0.0759016	0.0241881
chr10	11586335	11586435	4555815	0	-	0.29	(0.28,0.32]	chr10	420461	126	INTRON	INTRON	USP6NL	ENSG00000148429.15	ENST00000609104.6:ENST00000606752.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	156	2	2.8218	3.27903	3.73626	7.58796e-4	1.35646e-4	0.025219	0.0100405
chr18	12977765	12977863	6876461	0	+	0.306122	(0.28,0.32]	chr18	681310	16	EXON_MRNA	EXON_MRNA:INTRON	SEH1L	ENSG00000085415.16	ENST00000262124.15:ENST00000399892.7:ENST00000587761.1:ENST00000592582.5:ENST00000590843.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	64	2	1.45717	3.27893	5.10069	0.0472947	0.00610574	0.16913	0.0676501
chr1	25478929	25479029	48433	0	+	0.33	(0.32,0.35]	chr1	5949	197	INTRON	INTRON	MACO1	ENSG00000204178.11	ENST00000399766.7:ENST00000374343.5:ENST00000647928.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	39	2	2.01768	3.2787800000000002	4.53988	0.0361337	0.0202178	0.152563	0.109913
chr1	61432153	61432253	130911	0	+	0.35	(0.32,0.35]	chr1	14866	52	INTRON	INTRON	NFIA	ENSG00000162599.17	ENST00000371191.5:ENST00000664495.1:ENST00000407417.7:ENST00000371189.8:ENST00000670151.1:ENST00000664149.1:ENST00000662015.1:ENST00000403491.8:ENST00000371187.7:ENST00000485903.6:ENST00000371185.6:ENST00000371184.6:ENST00000663597.1:ENST00000657234.1:ENST00000655770.1:ENST00000357977.5:ENST00000493627.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	39	2	2.01768	3.2787800000000002	4.53988	0.0361337	0.0202178	0.152563	0.109913
chr3	44813580	44813680	1412765	0	+	0.33	(0.32,0.35]	chr3	148262	4	SS5_PROX	SS5_PROX:INTRON	KIF15	ENSG00000163808.17	ENST00000438321.5:ENST00000326047.9:ENST00000481166.6:ENST00000425755.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	39	2	2.01768	3.2787800000000002	4.53988	0.0361337	0.0202178	0.152563	0.109913
chr6	159684553	159684653	3253782	0	-	0.39	(0.378,0.408]	chr6	302442	3	SS5_PROX	SS5_PROX:INTRON	SOD2	ENSG00000112096.19	ENST00000538183.7:ENST00000546260.5:ENST00000367055.8:ENST00000367054.6:ENST00000546087.5:ENST00000444946.6:ENST00000337404.8:ENST00000535459.5:ENST00000541573.5:ENST00000540491.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	30	2	2.46373	3.27876	4.09379	0.0382831	0.023912	0.141795	0.129075
chr11	78416745	78416845	5000377	0	-	0.54	(0.515,0.57]	chr11	472472	523	INTRON	INTRON	GAB2	ENSG00000033327.13	ENST00000361507.5:ENST00000526030.1:ENST00000528886.5:ENST00000530915.1:ENST00000534823.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	9	160	2	2.66883	3.2787249999999997	3.88862	4.8375e-5	6.21929e-6	0.00567485	0.00187031
chr1	26708628	26708728	51297	0	+	0.37	(0.35,0.378]	chr1	6542	107	INTRON	INTRON	ARID1A	ENSG00000117713.21	ENST00000430799.7:ENST00000324856.13:ENST00000637465.1:ENST00000457599.6	protein_coding	protein_coding	protein_coding	protein_coding	12	301	2	2.63799	3.278545	3.9191	1.32143e-4	1.47356e-7	0.0104667	1.75207e-4
chr13	25306905	25307004	5457217	0	+	0.383838	(0.378,0.408]	chr13	522871	34	INTRON	INTRON	NUP58	ENSG00000139496.17	ENST00000481980.2:ENST00000490231.6:ENST00000695571.1:ENST00000477876.2:ENST00000695572.1:ENST00000463407.6:ENST00000695573.1:ENST00000381736.8:ENST00000695583.1:ENST00000465068.5:ENST00000460326.5:ENST00000480187.5:ENST00000466694.6:ENST00000381718.8:ENST00000695575.1:ENST00000695574.1:ENST00000495460.2:ENST00000381747.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	58	2	1.74732	3.2785	4.80968	0.0166132	0.00679828	0.110511	0.0711802
chr13	98571794	98571894	5643740	0	-	0.52	(0.515,0.57]	chr13	537505	499	INTRON	INTRON	STK24	ENSG00000102572.15	ENST00000539966.6:ENST00000397517.6:ENST00000491878.5:ENST00000481288.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	34	2	1.7074	3.27838	4.84936	0.0779432	0.00146032	0.196685	0.0349875
chr12	132782693	132782793	5449733	0	-	0.5	(0.476,0.515]	chr12	522006	2	SS3_PROX	SS3_PROX:INTRON	GOLGA3	ENSG00000090615.16	ENST00000204726.9:ENST00000450791.8:ENST00000693666.1:ENST00000688114.1:ENST00000687190.1:ENST00000690511.1:ENST00000685283.1:ENST00000691696.1:ENST00000691636.1:ENST00000690897.1:ENST00000690465.1:ENST00000456883.7:ENST00000692253.1:ENST00000687502.1:ENST00000688772.1:ENST00000687479.1:ENST00000690709.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	105	2	2.93859	3.2782299999999998	3.61787	0.00143107	3.07966e-5	0.0340925	0.004431
chr22	30970896	30970994	7501268	0	+	0.387755	(0.378,0.408]	chr22	765293	12	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	TUG1	ENSG00000253352.10	ENST00000646021.1:ENST00000646496.1:ENST00000644773.2:ENST00000569384.2:ENST00000643920.1:ENST00000602971.2:ENST00000519077.4:ENST00000643280.1:ENST00000643877.1:ENST00000643071.1:ENST00000540687.6:ENST00000644027.1:ENST00000647354.1:ENST00000643553.1:ENST00000569149.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	82	2	2.78867	3.278205	3.76774	0.00226991	4.21442e-4	0.0437013	0.0189827
chr14	73097300	73097400	5784476	0	+	0.53	(0.515,0.57]	chr14	547861	2	SS5_PROX	SS5_PROX:INTRON	RBM25	ENSG00000119707.14	ENST00000527432.5:ENST00000261973.12:ENST00000532683.5:ENST00000525321.5:ENST00000526754.5:ENST00000528081.5:ENST00000532192.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	34	2	1.8707	3.27819	4.68568	0.0523213	0.00270027	0.160182	0.0479115
chr16	18098785	18098885	6453621	0	-	0.53	(0.515,0.57]	chr16	621960	950	INTRON	INTRON	ENSG00000259929:ENSG00000260242	ENSG00000259929.5:ENSG00000260242.1	ENST00000567304.1:ENST00000563866.1	lncRNA	lncRNA	lncRNA	lncRNA	2	34	2	1.8707	3.27819	4.68568	0.0523213	0.00270027	0.160182	0.0479115
chr18	9939454	9939553	6873604	0	+	0.252525	[0,0.28]	chr18	680892	20	INTRON	INTRON	VAPA	ENSG00000101558.14	ENST00000400000.7:ENST00000340541.4:ENST00000584796.5:ENST00000583879.5:ENST00000583475.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	115	2	2.36941	3.2779350000000003	4.18646	0.0178556	6.99068e-5	0.106151	0.00692586
chr5	131785523	131785623	2720630	0	-	0.39	(0.378,0.408]	chr5	255730	405	INTRON	INTRON	FNIP1	ENSG00000217128.13	ENST00000510461.6:ENST00000307954.12:ENST00000307968.11:ENST00000511848.1	protein_coding	protein_coding	protein_coding	protein_coding	5	115	2	2.97759	3.2779	3.57821	9.60401e-4	7.69155e-5	0.0282401	0.00735438
chr10	11565276	11565372	4555601	0	-	0.385417	(0.378,0.408]	chr10	420449	13	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	USP6NL	ENSG00000148429.15	ENST00000609104.6:ENST00000379237.6:ENST00000443016.1:ENST00000606752.1:ENST00000609853.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	36	2	1.97143	3.27785	4.58427	0.0398704	0.0128325	0.161534	0.0926667
chr15	65746081	65746181	6209327	0	-	0.4	(0.378,0.408]	chr15	592591	39	INTRON	INTRON	DENND4A	ENSG00000174485.16	ENST00000443035.8:ENST00000431932.6:ENST00000635620.2:ENST00000564674.5:ENST00000568515.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	36	2	1.97143	3.27785	4.58427	0.0398704	0.0128325	0.161534	0.0926667
chr15	66395876	66395976	6049325	0	+	0.4	(0.378,0.408]	chr15	576031	81	INTRON	INTRON	MAP2K1	ENSG00000169032.11	ENST00000425818.2:ENST00000689951.1:ENST00000685763.1:ENST00000307102.10:ENST00000691576.1:ENST00000686347.1:ENST00000691077.1:ENST00000687191.1:ENST00000691937.1:ENST00000692487.1:ENST00000685172.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	36	2	1.97143	3.27785	4.58427	0.0398704	0.0128325	0.161534	0.0926667
chr16	18923624	18923723	6458083	0	-	0.353535	(0.35,0.378]	chr16	622895	121	INTRON	INTRON	SMG1	ENSG00000157106.18	ENST00000446231.7:ENST00000532700.6:ENST00000569122.1	protein_coding	protein_coding	protein_coding	protein_coding	5	120	2	2.21686	3.2778349999999996	4.33881	0.00414535	2.94594e-5	0.0589266	0.00450823
chr17	46134631	46134731	6784282	0	-	0.49	(0.476,0.515]	chr17	669216	134	INTRON	INTRON	KANSL1	ENSG00000120071.15	ENST00000574590.6:ENST00000572904.6:ENST00000432791.7:ENST00000575318.6:ENST00000638275.1:ENST00000262419.10:ENST00000648792.1:ENST00000639531.1:ENST00000639150.1:ENST00000639853.1:ENST00000571698.2:ENST00000639375.1:ENST00000638269.1:ENST00000576248.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	107	2	2.37295	3.277805	4.18266	0.00193884	4.55166e-5	0.0409025	0.00583644
chr4	77813775	77813875	2166980	0	-	0.38	(0.378,0.408]	chr4	213719	370	INTRON	INTRON	CNOT6L	ENSG00000138767.14	ENST00000504123.7:ENST00000649644.1:ENST00000515506.6:ENST00000512485.6:ENST00000504804.7:ENST00000506166.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	37	2	2.23831	3.2776499999999995	4.31699	0.0250408	0.0179575	0.12011	0.114265
chr5	141547882	141547982	2739446	0	-	0.4	(0.378,0.408]	chr5	258065	131	INTRON	INTRON	DIAPH1	ENSG00000131504.18	ENST00000647433.1:ENST00000389054.8:ENST00000518047.5:ENST00000491754.5:ENST00000518484.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	37	2	2.23831	3.2776499999999995	4.31699	0.0250408	0.0179575	0.12011	0.114265
chr21	10431173	10431273	7368306	0	+	0.5	(0.476,0.515]	chr21	751975	159	INTRON	INTRON	BAGE2	ENSG00000187172.15	ENST00000474011.5:ENST00000470054.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	7	172	2	2.81275	3.27764	3.74253	2.81185e-4	1.85211e-6	0.015437	8.28321e-4
chr1	12484750	12484850	30862	0	+	0.39	(0.378,0.408]	chr1	3789	55	INTRON	INTRON	VPS13D	ENSG00000048707.15	ENST00000620676.6:ENST00000613099.4:ENST00000011700.10:ENST00000646411.1:ENST00000543710.5:ENST00000645371.1:ENST00000543766.2:ENST00000645148.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	36	2	1.81685	3.2776199999999998	4.73839	0.0597868	0.00837252	0.189982	0.0774402
chr13	41340653	41340753	5474519	0	+	0.39	(0.378,0.408]	chr13	524481	35	INTRON	INTRON	NAA16	ENSG00000172766.19	ENST00000379406.8:ENST00000403412.7:ENST00000476980.5:ENST00000464857.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	36	2	1.81685	3.2776199999999998	4.73839	0.0597868	0.00837252	0.189982	0.0774402
chr13	52459597	52459697	5504094	0	+	0.39	(0.378,0.408]	chr13	526649	26	INTRON	INTRON	CKAP2	ENSG00000136108.15	ENST00000468284.1:ENST00000378034.7:ENST00000378037.9:ENST00000258607.10:ENST00000490903.5:ENST00000480747.1	protein_coding	protein_coding	protein_coding	protein_coding	2	36	2	1.81685	3.2776199999999998	4.73839	0.0597868	0.00837252	0.189982	0.0774402
chr17	46143826	46143926	6784374	0	-	0.4	(0.378,0.408]	chr17	669216	226	INTRON	INTRON	KANSL1	ENSG00000120071.15	ENST00000574590.6:ENST00000572904.6:ENST00000432791.7:ENST00000575318.6:ENST00000638275.1:ENST00000262419.10:ENST00000648792.1:ENST00000639531.1:ENST00000639150.1:ENST00000639853.1:ENST00000571698.2:ENST00000639375.1:ENST00000638269.1:ENST00000576248.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	36	2	1.81685	3.2776199999999998	4.73839	0.0597868	0.00837252	0.189982	0.0774402
chr3	23946753	23946852	1388700	0	+	0.393939	(0.378,0.408]	chr3	145444	1	INTRON	INTRON	NR1D2	ENSG00000174738.13	ENST00000312521.9:ENST00000383773.8:ENST00000492552.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	36	2	1.81685	3.2776199999999998	4.73839	0.0597868	0.00837252	0.189982	0.0774402
chrX	123690872	123690971	7878627	0	-	0.383838	(0.378,0.408]	chrX	802557	38	INTRON	INTRON	THOC2	ENSG00000125676.20	ENST00000245838.13:ENST00000355725.8:ENST00000491737.5:ENST00000433883.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	36	2	1.81685	3.2776199999999998	4.73839	0.0597868	0.00837252	0.189982	0.0774402
chr4	48856639	48856734	1958480	0	+	0.305263	(0.28,0.32]	chr4	196255	8	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	OCIAD1	ENSG00000109180.15	ENST00000509122.5:ENST00000505922.6:ENST00000396448.6:ENST00000381473.7:ENST00000264312.12:ENST00000444354.6:ENST00000506801.5:ENST00000503016.5:ENST00000425583.6:ENST00000508293.5:ENST00000513391.2:ENST00000508329.1:ENST00000502972.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	73	2	3.12332	3.27759	3.43186	0.00698537	0.00160646	0.0718189	0.0367961
chr9	112161294	112161393	4316642	0	-	0.454545	(0.44,0.476]	chr9	396993	33	INTRON	INTRON	SUSD1	ENSG00000106868.17	ENST00000374270.8:ENST00000374263.7:ENST00000355396.7:ENST00000374264.6	protein_coding	protein_coding	protein_coding	protein_coding	2	59	2	3.2029	3.277585	3.35227	0.00308681	0.0022005699999999998	0.0510391	0.0417893
chr4	139019061	139019161	2049416	0	+	0.54	(0.515,0.57]	chr4	203265	25	INTRON	INTRON	NOCT	ENSG00000151014.6	ENST00000280614.4:ENST00000630479.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	37	2	2.38476	3.277565	4.17037	0.0139194	0.0110593	0.10247	0.0873897
chr1	37898950	37899050	425696	0	-	0.55	(0.515,0.57]	chr1	51620	71	INTRON	INTRON	INPP5B	ENSG00000204084.13	ENST00000373023.6:ENST00000373024.8:ENST00000458109.6:ENST00000373027.5:ENST00000373026.5	protein_coding	protein_coding	protein_coding	protein_coding	1	24	2	2.35125	3.2775299999999996	4.20381	0.0436431	0.0189208	0.162255	0.108861
chr1	243170545	243170642	667859	0	-	0.536082	(0.515,0.57]	chr1	79262	4	INTRON	INTRON	CEP170	ENSG00000143702.16	ENST00000366544.5:ENST00000366543.5:ENST00000366542.6:ENST00000336415.8:ENST00000518289.5:ENST00000522895.1:ENST00000461671.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	24	2	2.35125	3.2775299999999996	4.20381	0.0436431	0.0189208	0.162255	0.108861
chr14	73423456	73423556	5918956	0	-	0.52	(0.515,0.57]	chr14	562258	130	INTRON	INTRON	NUMB	ENSG00000133961.21	ENST00000554546.5:ENST00000555238.6:ENST00000557597.5:ENST00000356296.8:ENST00000555394.5:ENST00000554394.5:ENST00000555307.5:ENST00000554315.5:ENST00000555987.5:ENST00000556112.5:ENST00000557774.5:ENST00000554818.5:ENST00000557031.5:ENST00000556600.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	24	2	2.35125	3.2775299999999996	4.20381	0.0436431	0.0189208	0.162255	0.108861
chr15	64126584	64126673	6043172	0	+	0.539326	(0.515,0.57]	chr15	575524	4	SS5_PROX	SS5_PROX:INTRON	SNX1	ENSG00000028528.15	ENST00000560829.5:ENST00000559844.6:ENST00000380285.7:ENST00000261889.9:ENST00000560260.5:ENST00000561026.5:ENST00000558040.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	24	2	2.35125	3.2775299999999996	4.20381	0.0436431	0.0189208	0.162255	0.108861
chr16	29450376	29450476	6470043	0	-	0.53	(0.515,0.57]	chr16	625071	1	SS3_PROX	SS3_PROX:INTRON	ENSG00000288632:BOLA2-SMG1P6	ENSG00000288632.1:ENSG00000261740.7	ENST00000675579.1:ENST00000569622.6:ENST00000565417.6:ENST00000568556.2:ENST00000380596.10	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:nonsense_mediated_decay:lncRNA	1	24	2	2.35125	3.2775299999999996	4.20381	0.0436431	0.0189208	0.162255	0.108861
chr16	89562795	89562883	6420901	0	+	0.534091	(0.515,0.57]	chr16	616321	5	EXON_MRNA	EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPL13	ENSG00000167526.14	ENST00000563749.1:ENST00000484610.5:ENST00000567815.5:ENST00000563270.5:ENST00000311528.10:ENST00000562879.5:ENST00000452368.7:ENST00000393099.3:ENST00000399461.8:ENST00000570149.1:ENST00000472354.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	24	2	2.35125	3.2775299999999996	4.20381	0.0436431	0.0189208	0.162255	0.108861
chr19	10704530	10704629	7013662	0	+	0.545455	(0.515,0.57]	chr19	696868	19	INTRON	INTRON	QTRT1	ENSG00000213339.9	ENST00000589488.5:ENST00000250237.10:ENST00000421333.6:ENST00000590705.5:ENST00000585885.5:ENST00000587599.5:ENST00000592254.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	24	2	2.35125	3.2775299999999996	4.20381	0.0436431	0.0189208	0.162255	0.108861
chr19	44915317	44915410	7078030	0	+	0.516129	(0.515,0.57]	chr19	707826	1	SS5_PROX	SS5_PROX:INTRON	APOC1	ENSG00000130208.10	ENST00000588750.5:ENST00000588802.5:ENST00000592535.6:ENST00000592885.5:ENST00000589781.1:ENST00000589078.1:ENST00000592176.1:ENST00000586638.5:ENST00000590334.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	24	2	2.35125	3.2775299999999996	4.20381	0.0436431	0.0189208	0.162255	0.108861
chr2	87805606	87805704	1172994	0	-	0.530612	(0.515,0.57]	chr2	125238	46	INTRON	INTRON	RGPD2	ENSG00000185304.16	ENST00000398146.5	protein_coding	protein_coding	protein_coding	protein_coding	1	24	2	2.35125	3.2775299999999996	4.20381	0.0436431	0.0189208	0.162255	0.108861
chr4	2926875	2926975	1915884	0	+	0.57	(0.515,0.57]	chr4	192353	2	SS5_PROX	SS5_PROX:INTRON	ADD1	ENSG00000087274.19	ENST00000683351.1:ENST00000398125.5:ENST00000264758.11:ENST00000513328.6:ENST00000503455.6:ENST00000355842.7:ENST00000651918.1:ENST00000398129.5:ENST00000398123.6:ENST00000514940.5:ENST00000513762.2:ENST00000536424.2:ENST00000541843.2:ENST00000503062.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	24	2	2.35125	3.2775299999999996	4.20381	0.0436431	0.0189208	0.162255	0.108861
chr14	73428752	73428852	5919009	0	-	0.4	(0.378,0.408]	chr14	562258	183	INTRON	INTRON	NUMB	ENSG00000133961.21	ENST00000554546.5:ENST00000555238.6:ENST00000557597.5:ENST00000356296.8:ENST00000555394.5:ENST00000554394.5:ENST00000555307.5:ENST00000554315.5:ENST00000555987.5:ENST00000556112.5:ENST00000557774.5:ENST00000554818.5:ENST00000557031.5:ENST00000556600.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	40	2	1.94681	3.27726	4.60771	0.0457723	0.00567576	0.149888	0.0678837
chrX	71543766	71543866	7680054	0	+	0.37	(0.35,0.378]	chrX	786397	53	INTRON	INTRON	OGT	ENSG00000147162.14	ENST00000373719.8:ENST00000488174.5:ENST00000373701.7:ENST00000498566.3:ENST00000444774.3:ENST00000455587.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	20	512	2	3.22374	3.277235	3.33073	3.96819e-6	1.05361e-7	0.00143365	1.4332e-4
chr17	56907569	56907669	6799080	0	-	0.35	(0.32,0.35]	chr17	671270	27	INTRON	INTRON	TRIM25	ENSG00000121060.19	ENST00000648772.1:ENST00000682766.1:ENST00000316881.9:ENST00000537230.3:ENST00000572021.6:ENST00000572550.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	33	2	2.51061	3.277125	4.04364	0.0364463	0.034181	0.146815	0.138959
chr18	9928254	9928352	6873486	0	+	0.22449	[0,0.28]	chr18	680874	29	INTRON	INTRON	VAPA	ENSG00000101558.14	ENST00000400000.7:ENST00000577901.5:ENST00000340541.4:ENST00000585042.5:ENST00000584796.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	83	2	2.97616	3.277125	3.57809	0.0128425	0.00109779	0.0926667	0.0303708
chr22	20318018	20318118	7556945	0	-	0.35	(0.32,0.35]	chr22	772742	14	INTRON	INTRON	DGCR6L	ENSG00000128185.10	ENST00000248879.8:ENST00000405465.3:ENST00000443409.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	33	2	2.51061	3.277125	4.04364	0.0364463	0.034181	0.146815	0.138959
chr6	131657132	131657231	2960386	0	+	0.333333	(0.32,0.35]	chr6	278292	39	INTRON	INTRON	ENPP3	ENSG00000154269.15	ENST00000427707.5:ENST00000414305.5:ENST00000357639.8:ENST00000358229.6:ENST00000470930.5:ENST00000494023.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	33	2	2.51061	3.277125	4.04364	0.0364463	0.034181	0.146815	0.138959
chr7	27630962	27631059	3510621	0	-	0.329897	(0.32,0.35]	chr7	327336	11	INTRON	INTRON	HIBADH	ENSG00000106049.9	ENST00000265395.7:ENST00000428288.2:ENST00000425715.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	33	2	2.51061	3.277125	4.04364	0.0364463	0.034181	0.146815	0.138959
chr1	12443761	12443861	30447	0	+	0.36	(0.35,0.378]	chr1	3762	266	INTRON	INTRON	VPS13D	ENSG00000048707.15	ENST00000620676.6:ENST00000613099.4:ENST00000011700.10:ENST00000646411.1:ENST00000543710.5:ENST00000645371.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	65	2	2.78212	3.27705	3.77198	0.0168532	2.78147e-4	0.103549	0.0148626
chr15	87703772	87703852	6256592	0	-	0.575	(0.57,1]	chr15	596829	1	EXON_LNCRNA	EXON_LNCRNA	ENSG00000259560	ENSG00000259560.2	ENST00000665121.1:ENST00000560439.1	lncRNA	lncRNA	lncRNA	lncRNA	9	99	2	2.58719	3.27704	3.96689	5.59388e-5	1.00452e-6	0.0065474	5.7159e-4
chr11	10292614	10292714	4914724	0	-	0.43	(0.408,0.44]	chr11	460478	983	INTRON	INTRON	SBF2	ENSG00000133812.18	ENST00000692716.1:ENST00000689940.1:ENST00000256190.13:ENST00000689128.1:ENST00000675281.2:ENST00000676387.2:ENST00000676324.2:ENST00000689258.1:ENST00000533770.6:ENST00000688417.1:ENST00000687210.1:ENST00000526353.2:ENST00000693022.1:ENST00000693201.1:ENST00000686079.1:ENST00000688206.1:ENST00000687256.1:ENST00000685217.1:ENST00000693212.1:ENST00000687300.1:ENST00000688739.1:ENST00000690806.1:ENST00000686677.1:ENST00000692068.1:ENST00000690959.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	31	2	2.71911	3.277025	3.83494	0.0411442	0.0189489	0.161534	0.108861
chr8	76999789	76999889	3977772	0	-	0.41	(0.408,0.44]	chr8	364455	4	SS5_PROX	SS5_PROX:INTRON	PEX2	ENSG00000164751.15	ENST00000357039.9:ENST00000520103.5:ENST00000522527.5:ENST00000519956.1:ENST00000520203.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	31	2	2.71911	3.277025	3.83494	0.0411442	0.0189489	0.161534	0.108861
chr5	81302973	81303072	2402586	0	+	0.323232	(0.32,0.35]	chr5	232067	15	UTR5	UTR5:EXON_MRNA:INTRON	ZCCHC9	ENSG00000131732.12	ENST00000407610.8:ENST00000507402.5:ENST00000254037.6:ENST00000506458.5:ENST00000380199.9:ENST00000438268.2:ENST00000504502.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	43	2	1.83416	3.2769299999999997	4.7197	0.0631198	0.00568521	0.176946	0.0678837
chr1	172535389	172535489	254708	0	+	0.41	(0.408,0.44]	chr1	30357	15	INTRON	INTRON	SUCO	ENSG00000094975.14	ENST00000367723.8:ENST00000608151.5:ENST00000616058.4:ENST00000263688.4:ENST00000610051.5:ENST00000608566.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	43	2	1.8749	3.27692	4.67894	0.0264246	0.0087648	0.133676	0.0788605
chr16	29543592	29543690	6471023	0	-	0.367347	(0.35,0.378]	chr16	625223	15	INTRON	INTRON	ENSG00000288632:SMG1P2	ENSG00000288632.1:ENSG00000205534.6	ENST00000675579.1:ENST00000566127.1	lncRNA	lncRNA	lncRNA:transcribed_unprocessed_pseudogene	lncRNA:transcribed_unprocessed_pseudogene	4	105	2	2.13524	3.2767749999999998	4.41831	0.0130865	7.98766e-6	0.0934394	0.00202605
chr2	241310209	241310309	1348515	0	-	0.35	(0.32,0.35]	chr2	141652	76	INTRON	INTRON	HDLBP	ENSG00000115677.18	ENST00000310931.10:ENST00000391976.6:ENST00000428482.5:ENST00000441124.5:ENST00000413241.5:ENST00000423693.5:ENST00000425989.5:ENST00000420451.5:ENST00000417540.5:ENST00000462130.1:ENST00000496569.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	54	2	1.59364	3.276675	4.95971	0.0413426	0.00663522	0.161557	0.0703181
chr11	34456106	34456202	4768831	0	+	0.427083	(0.408,0.44]	chr11	441244	2	CDS	CDS:UTR3:EXON_MRNA	CAT	ENSG00000121691.7	ENST00000241052.5:ENST00000650153.1:ENST00000528104.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	79	2	3.2225799999999998	3.276625	3.33067	0.0024459	2.79412e-4	0.0445752	0.0148832
chr9	128168454	128168551	4357604	0	-	0.42268	(0.408,0.44]	chr9	400244	9	INTRON	INTRON	CIZ1	ENSG00000148337.22	ENST00000651955.1:ENST00000471773.5:ENST00000372938.10:ENST00000372954.5:ENST00000538431.5:ENST00000357558.9:ENST00000629610.2:ENST00000372948.7:ENST00000277465.8:ENST00000634901.1:ENST00000415526.5:ENST00000471839.5:ENST00000485001.1:ENST00000476727.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	121	2	2.67594	3.276625	3.87731	2.32969e-4	1.93157e-4	0.013966	0.012131
chr4	1940850	1940947	1911282	0	+	0.587629	(0.57,1]	chr4	191788	12	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	NSD2	ENSG00000109685.19	ENST00000508803.6:ENST00000514045.5:ENST00000398261.6:ENST00000382891.9:ENST00000353275.9:ENST00000382892.6:ENST00000382895.7:ENST00000312087.10:ENST00000420906.6:ENST00000503128.5:ENST00000677559.1:ENST00000512700.2:ENST00000678714.1:ENST00000511904.1:ENST00000513726.5:ENST00000678128.1:ENST00000482415.6:ENST00000514329.5:ENST00000502425.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	35	2	1.42298	3.276595	5.13021	0.0510995	1.21664e-4	0.176696	0.00992813
chr8	27380450	27380550	3720334	0	+	0.39	(0.378,0.408]	chr8	345640	532	INTRON	INTRON	PTK2B	ENSG00000120899.18	ENST00000397501.5:ENST00000522338.5:ENST00000521164.5:ENST00000346049.10:ENST00000420218.3:ENST00000522517.5	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	2.72993	3.276435	3.82294	0.044228	0.0188736	0.162255	0.108861
chr9	73167869	73167962	4142548	0	+	0.311828	(0.28,0.32]	chr9	377578	1	SS5_PROX	SS5_PROX:INTRON	ANXA1	ENSG00000135046.14	ENST00000257497.11:ENST00000376911.1	protein_coding	protein_coding	protein_coding	protein_coding	2	77	2	2.62686	3.276395	3.92593	0.0289217	1.77822e-4	0.1274	0.0116289
chr12	116240801	116240901	5425182	0	-	0.4	(0.378,0.408]	chr12	518291	27	INTRON	INTRON	MED13L	ENSG00000123066.9	ENST00000281928.9:ENST00000650226.1:ENST00000548743.2:ENST00000551197.2:ENST00000650375.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	40	2	2.56408	3.276375	3.98867	0.0507	0.00566993	0.156383	0.0678837
chr5	181256406	181256504	2563431	0	+	0.602041	(0.57,1]	chr5	245313	8	EXON_MRNA	EXON_MRNA:INTRON	CTC-338M12.4	ENSG00000233937.8	ENST00000506340.3:ENST00000505151.6:ENST00000511331.5:ENST00000417281.2:ENST00000599439.2	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	3	30	2	2.23972	3.2762450000000003	4.31277	0.00670296	0.00346264	0.0707084	0.0539802
chr4	73109224	73109323	2159304	0	-	0.474747	(0.44,0.476]	chr4	212662	53	INTRON	INTRON	ANKRD17	ENSG00000132466.20	ENST00000358602.9:ENST00000558247.5:ENST00000330838.10:ENST00000509867.6:ENST00000561029.1	protein_coding	protein_coding	protein_coding	protein_coding	5	108	2	2.20714	3.27614	4.34514	0.00493236	9.96891e-6	0.061186	0.00229529
chr21	37508240	37508339	7407660	0	+	0.515152	(0.476,0.515]	chr21	754955	15	INTRON	INTRON	DYRK1A	ENSG00000157540.22	ENST00000646523.1:ENST00000647425.1:ENST00000647188.2:ENST00000647504.1:ENST00000644942.1:ENST00000338785.8:ENST00000643624.1:ENST00000398960.7:ENST00000646548.1:ENST00000398956.2:ENST00000646224.1:ENST00000646351.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	58	2	3.15202	3.2760249999999997	3.40003	0.00455841	0.00139193	0.0595107	0.0341261
chr22	50372550	50372650	7544482	0	+	0.38	(0.378,0.408]	chr22	771020	4	SS5_PROX	SS5_PROX:INTRON	PPP6R2	ENSG00000100239.16	ENST00000359139.7:ENST00000395741.7:ENST00000612753.5:ENST00000395744.7:ENST00000216061.9	protein_coding	protein_coding	protein_coding	protein_coding	3	46	2	2.14029	3.27599	4.41169	0.0199606	0.0106742	0.109608	0.0917199
chr16	15129381	15129481	6450723	0	-	0.51	(0.476,0.515]	chr16	621623	1	SS5_PROX	SS5_PROX:INTRON	ENSG00000270580:PKD1P6	ENSG00000270580.5:ENSG00000250251.6	ENST00000605794.5:ENST00000343738.10:ENST00000424133.2	lncRNA	lncRNA	lncRNA:transcribed_unprocessed_pseudogene	lncRNA:processed_transcript:transcribed_unprocessed_pseudogene	2	59	2	2.8863	3.275975	3.66565	0.0111679	4.18031e-4	0.0877435	0.0182827
chr12	844135	844235	5057099	0	+	0.54	(0.515,0.57]	chr12	477445	136	INTRON	INTRON	WNK1	ENSG00000060237.19	ENST00000315939.11:ENST00000340908.9:ENST00000535572.5:ENST00000537687.5:ENST00000530271.6:ENST00000540360.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	42	2	1.8661	3.27589	4.68568	0.0274846	0.00270027	0.123904	0.0479115
chr19	938129	938229	6992611	0	+	0.55	(0.515,0.57]	chr19	692392	50	INTRON	INTRON	ARID3A	ENSG00000116017.11	ENST00000263620.8:ENST00000587532.5:ENST00000457152.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	93	2	2.77687	3.275885	3.7749	2.59829e-4	1.97084e-4	0.0148796	0.0122531
chr17	35724668	35724765	6600938	0	+	0.57732000000000006	(0.57,1]	chr17	642370	11	UTR3	UTR3:EXON_MRNA	AP2B1	ENSG00000006125.18	ENST00000621914.4:ENST00000610402.5	protein_coding	protein_coding	protein_coding	protein_coding	9	98	2	2.66869	3.27583	3.88297	2.94254e-5	2.15219e-6	0.00431333	0.0010225
chr11	86035904	86036004	5014511	0	-	0.36	(0.35,0.378]	chr11	473022	39	INTRON	INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000630913.2:ENST00000528398.5:ENST00000356360.9:ENST00000534412.5:ENST00000531558.1:ENST00000531930.5:ENST00000532041.5:ENST00000525162.5:ENST00000528256.1:ENST00000528411.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	177	2	3.13887	3.275805	3.41274	1.98559e-4	1.29746e-5	0.0129178	0.00266543
chr6	167907789	167907885	3035159	0	+	0.375	(0.35,0.378]	chr6	282785	1	INTRON	INTRON	AFDN	ENSG00000130396.21	ENST00000683244.1:ENST00000351017.9:ENST00000344191.8:ENST00000392112.5:ENST00000392108.7:ENST00000400822.7:ENST00000447894.6:ENST00000366809.6:ENST00000366806.6:ENST00000423229.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	117	2	2.7624	3.27576	3.78912	4.25686e-4	2.88804e-4	0.0189958	0.0150776
chr1	28738438	28738538	58358	0	+	0.53	(0.515,0.57]	chr1	7586	1	SS5_PROX	SS5_PROX:INTRON	YTHDF2	ENSG00000198492.16	ENST00000542507.5:ENST00000474884.5:ENST00000373812.8:ENST00000541996.5:ENST00000478283.5:ENST00000496288.5:ENST00000476976.1:ENST00000475796.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	19	316	2	2.54964	3.2756600000000002	4.00168	9.05083e-6	6.65067e-8	0.00216278	1.09763e-4
chr10	68359694	68359794	4638666	0	-	0.52	(0.515,0.57]	chr10	426535	39	INTRON	INTRON	RUFY2	ENSG00000204130.14	ENST00000466493.5:ENST00000484083.5:ENST00000463210.6:ENST00000602465.6:ENST00000388768.6:ENST00000265865.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	49	2	1.38719	3.2756600000000002	5.16413	0.0540435	8.14815e-4	0.181713	0.0263656
chr1	246218325	246218425	677818	0	-	0.63	(0.57,1]	chr1	79733	247	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000453676.5:ENST00000462422.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	24	2	1.77365	3.275475	4.7773	0.0670385	5.07088e-4	0.183051	0.0202328
chr14	37078487	37078587	5877072	0	-	0.37	(0.35,0.378]	chr14	558013	2031	INTRON	INTRON	SLC25A21	ENSG00000183032.12	ENST00000331299.6:ENST00000555449.5:ENST00000557611.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	64	2	3.21677	3.2754	3.33403	0.00313804	0.00272701	0.0514466	0.0467523
chr7	152322021	152322121	3680149	0	-	0.37	(0.35,0.378]	chr7	341641	63	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000684262.1:ENST00000682301.1:ENST00000452749.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	165	2	2.97949	3.27537	3.57125	4.02507e-4	7.29801e-6	0.0185763	0.00191858
chr22	47866061	47866161	7541729	0	+	0.43	(0.408,0.44]	chr22	770801	15	INTRON	INTRON	ENSG00000224271	ENSG00000224271.7	ENST00000664761.1:ENST00000650683.1:ENST00000651536.1:ENST00000651445.1:ENST00000650660.1:ENST00000651403.1:ENST00000652228.1:ENST00000651124.1:ENST00000651003.1:ENST00000651939.1:ENST00000652080.1:ENST00000651033.1:ENST00000651584.1	lncRNA	lncRNA	lncRNA	lncRNA	2	40	2	2.11447	3.275135	4.4358	0.0285207	0.00893097	0.12666	0.0849778
chr1	21745373	21745472	396479	0	-	0.434343	(0.408,0.44]	chr1	47304	84	INTRON	INTRON	USP48	ENSG00000090686.16	ENST00000400301.5:ENST00000308271.14:ENST00000529637.5:ENST00000421625.6:ENST00000374730.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	64	2	2.51492	3.275125	4.03533	0.0329839	6.08082e-5	0.133816	0.00644153
chr16	2261977	2262077	6431631	0	-	0.37	(0.35,0.378]	chr16	618788	3	SS5_PROX	SS5_PROX:INTRON	RNPS1	ENSG00000205937.12	ENST00000397086.6:ENST00000566458.5:ENST00000320225.10:ENST00000566397.5:ENST00000565678.5:ENST00000561718.5:ENST00000568631.5:ENST00000569598.6:ENST00000301730.12:ENST00000567147.5:ENST00000565870.5:ENST00000561518.5:ENST00000564311.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	114	2	3.17264	3.275125	3.37761	6.16722e-4	1.38324e-4	0.0229036	0.0101276
chr22	21783962	21784062	7560543	0	-	0.39	(0.378,0.408]	chr22	773360	106	INTRON	INTRON	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	5	131	2	2.71418	3.2751099999999997	3.83604	0.00126468	8.26408e-6	0.0325134	0.00207261
chr1	109375784	109375884	520798	0	-	0.34	(0.32,0.35]	chr1	61195	58	INTRON	INTRON	SORT1	ENSG00000134243.12	ENST00000538502.5:ENST00000256637.8:ENST00000493736.5:ENST00000482236.5:ENST00000633956.1:ENST00000471996.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	29	2	2.48693	3.27496	4.06299	0.0559439	0.0338094	0.165463	0.146709
chr21	34098344	34098443	7401342	0	+	0.343434	(0.32,0.35]	chr21	753974	11	UTR3	UTR3:EXON_MRNA:INTRON	MRPS6:SLC5A3	ENSG00000243927.6:ENSG00000198743.7	ENST00000488492.5:ENST00000477091.5:ENST00000399312.3:ENST00000381151.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	29	2	2.48693	3.27496	4.06299	0.0559439	0.0338094	0.165463	0.146709
chr5	32128623	32128723	2597056	0	-	0.35	(0.32,0.35]	chr5	246732	16	INTRON	INTRON	GOLPH3	ENSG00000113384.14	ENST00000265070.7:ENST00000503610.5:ENST00000512668.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	29	2	2.48693	3.27496	4.06299	0.0559439	0.0338094	0.165463	0.146709
chr6	36886428	36886528	2854808	0	+	0.34	(0.32,0.35]	chr6	269859	4	SS5_PROX	SS5_PROX:INTRON	C6orf89	ENSG00000198663.17	ENST00000359359.6:ENST00000355190.7:ENST00000373685.1:ENST00000480824.7	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	2.48693	3.27496	4.06299	0.0559439	0.0338094	0.165463	0.146709
chr7	138483195	138483295	3434870	0	+	0.33	(0.32,0.35]	chr7	319959	215	INTRON	INTRON	TRIM24	ENSG00000122779.18	ENST00000343526.9:ENST00000415680.6:ENST00000497516.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	29	2	2.48693	3.27496	4.06299	0.0559439	0.0338094	0.165463	0.146709
chr7	152279039	152279138	3679712	0	-	0.343434	(0.32,0.35]	chr7	341617	48	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000684262.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	29	2	2.48693	3.27496	4.06299	0.0559439	0.0338094	0.165463	0.146709
chr7	152286376	152286476	3679786	0	-	0.34	(0.32,0.35]	chr7	341621	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000684262.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	29	2	2.48693	3.27496	4.06299	0.0559439	0.0338094	0.165463	0.146709
chr12	111898338	111898438	5229311	0	+	0.59	(0.57,1]	chr12	495712	54	UTR3	UTR3:EXON_MRNA	MAPKAPK5	ENSG00000089022.14	ENST00000550735.7	protein_coding	protein_coding	protein_coding	protein_coding	2	24	2	2.23711	3.27494	4.31277	0.0172108	0.00346264	0.104099	0.0539802
chr16	4763826	4763922	6438437	0	-	0.583333	(0.57,1]	chr16	620069	7	INTRON	INTRON	ZNF500	ENSG00000103199.14	ENST00000219478.11:ENST00000545009.1:ENST00000589422.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	24	2	2.23711	3.27494	4.31277	0.0172108	0.00346264	0.104099	0.0539802
chr7	101838963	101839063	3366578	0	+	0.59	(0.57,1]	chr7	315215	196	INTRON	INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000497815.5:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000607092.1:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000558469.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	24	2	2.23711	3.27494	4.31277	0.0172108	0.00346264	0.104099	0.0539802
chrX	48951279	48951379	7816010	0	-	0.61	(0.57,1]	chrX	796867	66	INTRON	INTRON	OTUD5	ENSG00000068308.15	ENST00000376488.8:ENST00000396743.7:ENST00000455452.5:ENST00000156084.8:ENST00000428668.2:ENST00000484499.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	24	2	2.23711	3.27494	4.31277	0.0172108	0.00346264	0.104099	0.0539802
chr14	23065369	23065465	5842668	0	-	0.479167	(0.476,0.515]	chr14	555591	5	INTRON	INTRON	ACIN1	ENSG00000100813.15	ENST00000605057.6:ENST00000557515.5:ENST00000262710.5:ENST00000457657.5:ENST00000357481.6:ENST00000338631.10:ENST00000473758.5:ENST00000397341.7:ENST00000555053.5:ENST00000555566.1:ENST00000557039.1:ENST00000555807.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	93	2	2.84089	3.2748549999999996	3.70882	4.74495e-4	4.67054e-4	0.0201638	0.0195793
chr7	152142020	152142120	3678269	0	-	0.33	(0.32,0.35]	chr7	341376	9	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000360104.8:ENST00000262189.11:ENST00000418061.2:ENST00000680877.1:ENST00000424877.6:ENST00000679560.1:ENST00000682040.1:ENST00000683640.1:ENST00000682116.1:ENST00000683120.1:ENST00000681923.1:ENST00000679393.1:ENST00000683200.1:ENST00000684768.1:ENST00000680029.1:ENST00000683337.1:ENST00000682629.1:ENST00000683178.1:ENST00000682137.1:ENST00000683502.1:ENST00000684261.1:ENST00000682283.1:ENST00000473186.5:ENST00000684649.1:ENST00000679882.1:ENST00000683621.1:ENST00000679567.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	44	2	1.99307	3.27484	4.55661	0.04271	0.00927858	0.148082	0.0855292
chr19	55387065	55387148	7101073	0	+	0.518072	(0.515,0.57]	chr19	712398	3	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPL28	ENSG00000108107.15	ENST00000344063.7:ENST00000558815.5:ENST00000428193.6:ENST00000560583.5:ENST00000560055.5:ENST00000560881.5:ENST00000559463.5:ENST00000426763.3:ENST00000558131.1:ENST00000558752.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	35	2	2.15051	3.274755	4.399	0.0238113	0.00708863	0.118889	0.0754923
chr14	101777131	101777231	5818649	0	+	0.35	(0.32,0.35]	chr14	551819	102	INTRON	INTRON	PPP2R5C	ENSG00000078304.20	ENST00000694906.1:ENST00000422945.6:ENST00000554442.5:ENST00000556068.5:ENST00000328724.9:ENST00000554504.1:ENST00000553890.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	68	2	2.89743	3.2746500000000003	3.65187	0.0127608	5.49434e-4	0.0926667	0.0213049
chr16	89342598	89342695	6542102	0	-	0.340206	(0.32,0.35]	chr16	634211	28	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000647238.1:ENST00000644045.1:ENST00000643147.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	48	2	1.93031	3.2746000000000004	4.61889	0.0231421	0.0166646	0.126939	0.102621
chr2	58219017	58219115	1126527	0	-	0.357143	(0.35,0.378]	chr2	120943	12	INTRON	INTRON	FANCL	ENSG00000115392.13	ENST00000696400.1:ENST00000403295.8:ENST00000696492.1:ENST00000427708.7:ENST00000696314.1:ENST00000696315.1:ENST00000696454.1:ENST00000696508.1:ENST00000696548.1:ENST00000696542.1:ENST00000696319.1:ENST00000403676.6:ENST00000696433.1:ENST00000696434.1:ENST00000696499.1:ENST00000696564.1:ENST00000402135.8:ENST00000696546.1:ENST00000233741.9:ENST00000696316.1:ENST00000696378.1:ENST00000696435.1:ENST00000696493.1:ENST00000696543.1:ENST00000696544.1:ENST00000696545.1:ENST00000696565.1:ENST00000696620.1:ENST00000696621.1:ENST00000696635.1:ENST00000696364.1:ENST00000696634.1:ENST00000696317.1:ENST00000696622.1:ENST00000696467.1:ENST00000696547.1:ENST00000449070.6:ENST00000696305.1:ENST00000417361.2:ENST00000696338.1:ENST00000696361.1:ENST00000696318.1:ENST00000696371.1:ENST00000696409.1:ENST00000696410.1:ENST00000696455.1:ENST00000696468.1:ENST00000696527.1:ENST00000696567.1:ENST00000696324.1:ENST00000696566.1:ENST00000696623.1:ENST00000446381.6:ENST00000696469.1:ENST00000696624.1:ENST00000696411.1:ENST00000470506.2:ENST00000696358.1:ENST00000696373.1:ENST00000696394.1:ENST00000696320.1:ENST00000696395.1:ENST00000696341.1:ENST00000696340.1:ENST00000696374.1:ENST00000696396.1:ENST00000696342.1:ENST00000696325.1:ENST00000696399.1:ENST00000696398.1:ENST00000696306.1:ENST00000696397.1:ENST00000696360.1:ENST00000696344.1:ENST00000696343.1:ENST00000696362.1:ENST00000696528.1:ENST00000696326.1:ENST00000696625.1:ENST00000696510.1:ENST00000696438.1:ENST00000696496.1:ENST00000696509.1:ENST00000696569.1:ENST00000696457.1:ENST00000696458.1:ENST00000696473.1:ENST00000696495.1:ENST00000696415.1:ENST00000696472.1:ENST00000696459.1:ENST00000696416.1:ENST00000696530.1:ENST00000696460.1:ENST00000696570.1:ENST00000696531.1:ENST00000696307.1:ENST00000696345.1:ENST00000696377.1:ENST00000696417.1:ENST00000696594.1:ENST00000696595.1:ENST00000696379.1:ENST00000696346.1:ENST00000696380.1:ENST00000696347.1:ENST00000696461.1:ENST00000696596.1:ENST00000696549.1:ENST00000696597.1:ENST00000696550.1:ENST00000696598.1:ENST00000696321.1:ENST00000696476.1:ENST00000696477.1:ENST00000696511.1:ENST00000481670.3:ENST00000696403.1:ENST00000696551.1:ENST00000696308.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	87	2	2.67874	3.2745800000000003	3.87042	0.00373022	2.9524e-4	0.0561984	0.0159581
chr10	131931262	131931362	4537169	0	+	0.41	(0.408,0.44]	chr10	418866	183	INTRON	INTRON	PPP2R2D	ENSG00000175470.20	ENST00000455566.6:ENST00000616467.4:ENST00000482010.6:ENST00000470416.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	79	2	2.79124	3.274395	3.75755	0.00276922	2.62433e-4	0.0469265	0.0143317
chr15	90756029	90756128	6101304	0	+	0.323232	(0.32,0.35]	chr15	580878	7	INTRON	INTRON	BLM	ENSG00000197299.13	ENST00000355112.8:ENST00000648453.1:ENST00000681142.1:ENST00000560509.5:ENST00000559724.5:ENST00000680772.1:ENST00000558599.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	68	2	3.23331	3.27432	3.31533	0.00323121	0.00315414	0.0515261	0.0507087
chr8	67208686	67208786	3962433	0	-	0.34	(0.32,0.35]	chr8	363563	16	INTRON	INTRON	ARFGEF1	ENSG00000066777.9	ENST00000520381.5:ENST00000518789.5:ENST00000262215.8:ENST00000518230.5	protein_coding	protein_coding	protein_coding	protein_coding	2	68	2	3.23331	3.27432	3.31533	0.00323121	0.00315414	0.0515261	0.0507087
chr3	183857248	183857347	1881325	0	-	0.373737	(0.35,0.378]	chr3	188018	3	INTRON	INTRON	PARL	ENSG00000175193.14	ENST00000639100.1:ENST00000317096.9:ENST00000638817.1:ENST00000311101.9:ENST00000435888.5:ENST00000639900.1:ENST00000421484.5:ENST00000449306.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	37	2	1.90405	3.27431	4.64457	0.0482651	0.012652	0.171852	0.0926667
chr6	87648439	87648538	2916192	0	+	0.373737	(0.35,0.378]	chr6	275532	116	INTRON	INTRON	ORC3	ENSG00000135336.16	ENST00000546266.5:ENST00000257789.4:ENST00000392844.8:ENST00000681069.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	37	2	1.90405	3.27431	4.64457	0.0482651	0.012652	0.171852	0.0926667
chr9	130879467	130879567	4215525	0	+	0.36	(0.35,0.378]	chr9	386472	5	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000318560.6	protein_coding	protein_coding	protein_coding	protein_coding	2	37	2	1.90405	3.27431	4.64457	0.0482651	0.012652	0.171852	0.0926667
chr3	155875176	155875275	1537172	0	+	0.434343	(0.408,0.44]	chr3	160082	39	INTRON	INTRON	GMPS	ENSG00000163655.16	ENST00000496455.7:ENST00000295920.7	protein_coding	protein_coding	protein_coding	protein_coding	2	59	2	2.95296	3.2743	3.59564	0.00929354	5.73354e-4	0.0817766	0.0217398
chr19	32672579	32672679	7169600	0	-	0.53	(0.515,0.57]	chr19	724478	132	INTRON	INTRON	ANKRD27	ENSG00000105186.16	ENST00000306065.9:ENST00000587352.5:ENST00000586463.5:ENST00000588700.5:ENST00000586693.7:ENST00000590519.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	32	2	1.94945	3.274295	4.59914	0.0414068	0.00616166	0.161557	0.0676501
chr1	51867107	51867207	455181	0	-	0.37	(0.35,0.378]	chr1	54631	43	INTRON	INTRON	NRDC	ENSG00000078618.23	ENST00000354831.11:ENST00000539524.5:ENST00000352171.12:ENST00000491410.1:ENST00000468722.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	37	2	1.82887	3.2742	4.71953	0.0584878	0.0103314	0.189395	0.0850389
chr17	60259371	60259469	6804536	0	-	0.377551	(0.35,0.378]	chr17	672314	28	INTRON	INTRON	USP32	ENSG00000170832.13	ENST00000300896.9:ENST00000590133.5:ENST00000589335.5:ENST00000393003.7	protein_coding	protein_coding	protein_coding	protein_coding	2	37	2	1.82887	3.2742	4.71953	0.0584878	0.0103314	0.189395	0.0850389
chr5	176458799	176458899	2552277	0	+	0.37	(0.35,0.378]	chr5	243670	47	INTRON	INTRON	FAF2	ENSG00000113194.13	ENST00000510730.5:ENST00000261942.7:ENST00000510446.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	37	2	1.82887	3.2742	4.71953	0.0584878	0.0103314	0.189395	0.0850389
chr2	108567710	108567810	846179	0	+	0.48	(0.476,0.515]	chr2	94661	328	INTRON	INTRON	LIMS1	ENSG00000169756.17	ENST00000695516.1:ENST00000544547.6:ENST00000695517.1	protein_coding	protein_coding	protein_coding	protein_coding	5	106	2	2.48917	3.27393	4.05869	0.00110233	8.7207e-5	0.03038	0.00839538
chr21	37374496	37374596	7406298	0	+	0.45	(0.44,0.476]	chr21	754846	60	INTRON	INTRON	DYRK1A	ENSG00000157540.22	ENST00000646523.1:ENST00000647425.1:ENST00000647188.2:ENST00000647504.1:ENST00000644942.1:ENST00000338785.8:ENST00000643624.1:ENST00000643551.1:ENST00000426672.6	protein_coding	protein_coding	protein_coding	protein_coding	4	106	2	3.15639	3.27388	3.39137	3.93757e-4	1.73175e-4	0.0178567	0.0120833
chr11	3863404	3863504	4723538	0	+	0.48	(0.476,0.515]	chr11	437119	66	INTRON	INTRON	STIM1	ENSG00000167323.12	ENST00000525403.5:ENST00000526596.2:ENST00000300737.8:ENST00000616714.4:ENST00000527651.5	protein_coding	protein_coding	protein_coding	protein_coding	4	105	2	3.17628	3.2738750000000003	3.37147	3.6008e-4	1.84258e-4	0.0169207	0.0123223
chr1	174307923	174308023	258606	0	+	0.38	(0.378,0.408]	chr1	30802	24	INTRON	INTRON	RABGAP1L	ENSG00000152061.24	ENST00000357444.10:ENST00000251507.8:ENST00000681986.1:ENST00000457696.1:ENST00000367690.5	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	2.2259	3.27382	4.32174	0.0662381	0.0132362	0.181924	0.0999551
chr10	77909474	77909574	4654621	0	-	0.38	(0.378,0.408]	chr10	428774	201	INTRON	INTRON	DLG5	ENSG00000151208.17	ENST00000372391.7	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	2.2259	3.27382	4.32174	0.0662381	0.0132362	0.181924	0.0999551
chr10	87129065	87129165	4481583	0	+	0.4	(0.378,0.408]	chr10	412411	317	INTRON	INTRON	SHLD2	ENSG00000122376.12	ENST00000437629.6:ENST00000298784.5:ENST00000298786.5	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	2.2259	3.27382	4.32174	0.0662381	0.0132362	0.181924	0.0999551
chr10	87514511	87514609	4482517	0	+	0.397959	(0.378,0.408]	chr10	412510	9	INTRON	INTRON	MINPP1	ENSG00000107789.16	ENST00000371994.8:ENST00000371996.9:ENST00000536010.1	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	2.2259	3.27382	4.32174	0.0662381	0.0132362	0.181924	0.0999551
chr17	31898064	31898162	6752885	0	-	0.397959	(0.378,0.408]	chr17	663815	27	INTRON	INTRON	UTP6	ENSG00000108651.10	ENST00000261708.9:ENST00000583408.5:ENST00000490218.6:ENST00000579878.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	29	2	2.2259	3.27382	4.32174	0.0662381	0.0132362	0.181924	0.0999551
chr2	189471762	189471858	952944	0	+	0.395833	(0.378,0.408]	chr2	103723	5	INTRON	INTRON	WDR75	ENSG00000115368.10	ENST00000436347.5:ENST00000314761.9:ENST00000427960.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	29	2	2.2259	3.27382	4.32174	0.0662381	0.0132362	0.181924	0.0999551
chr4	74163846	74163946	1972361	0	+	0.4	(0.378,0.408]	chr4	197724	17	INTRON	INTRON	MTHFD2L	ENSG00000163738.19	ENST00000429519.5:ENST00000429335.5:ENST00000433372.5:ENST00000423607.6:ENST00000395759.6:ENST00000325278.7:ENST00000359107.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	29	2	2.2259	3.27382	4.32174	0.0662381	0.0132362	0.181924	0.0999551
chr5	97171105	97171205	2683138	0	-	0.38	(0.378,0.408]	chr5	253728	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	RIOK2	ENSG00000058729.11	ENST00000283109.8:ENST00000508447.1	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	2.2259	3.27382	4.32174	0.0662381	0.0132362	0.181924	0.0999551
chr22	45340889	45340986	7530467	0	+	0.515464	(0.515,0.57]	chr22	770005	6	UTR3	UTR3:EXON_MRNA	FAM118A	ENSG00000100376.12	ENST00000216214.7:ENST00000441876.7	protein_coding	protein_coding	protein_coding	protein_coding	7	148	2	2.76267	3.273705	3.78474	2.74246e-4	8.58313e-7	0.0151711	5.23582e-4
chr19	1273101	1273199	6994628	0	+	0.438776	(0.408,0.44]	chr19	693004	2	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS3_PROX:SS5_PROX:INTRON	CIRBP	ENSG00000099622.14	ENST00000588030.5:ENST00000586472.5:ENST00000588090.5:ENST00000591935.5:ENST00000586548.5:ENST00000585913.5:ENST00000589710.5:ENST00000586773.5:ENST00000587896.6:ENST00000593093.5:ENST00000413636.6:ENST00000590347.5:ENST00000587169.5:ENST00000320936.9:ENST00000586636.5:ENST00000591376.5:ENST00000589235.5:ENST00000585914.5:ENST00000588344.2:ENST00000592234.5:ENST00000444172.6:ENST00000590188.5:ENST00000588917.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	130	2	2.38669	3.27356	4.16043	5.58744e-4	5.66588e-5	0.0215418	0.00655354
chr6	37821215	37821315	2857047	0	+	0.34	(0.32,0.35]	chr6	270225	8	INTRON	INTRON	ZFAND3	ENSG00000156639.12	ENST00000287218.9:ENST00000373391.6:ENST00000474522.5	protein_coding	protein_coding	protein_coding	protein_coding	3	47	2	1.78201	3.27351	4.76501	0.0365003	0.0114287	0.153759	0.0886611
chr1	246068160	246068259	676313	0	-	0.343434	(0.32,0.35]	chr1	79717	147	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000391836.3:ENST00000464398.1:ENST00000453676.5:ENST00000462422.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	34	2	2.6321	3.27348	3.91486	0.0450361	0.0268	0.163255	0.123349
chr6	31651455	31651555	3079017	0	-	0.48	(0.476,0.515]	chr6	286871	4	SS5_PROX	SS5_PROX:INTRON	BAG6	ENSG00000204463.14	ENST00000211379.9:ENST00000679119.1:ENST00000375964.11:ENST00000676571.1:ENST00000676615.2:ENST00000375976.8:ENST00000362049.10:ENST00000439687.6:ENST00000437771.5:ENST00000435080.5:ENST00000456622.5:ENST00000452994.5:ENST00000434444.5:ENST00000428326.5:ENST00000451898.5:ENST00000433828.5:ENST00000424480.5:ENST00000424176.5:ENST00000441054.5:ENST00000456286.5:ENST00000454165.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	190	2	2.85072	3.2733999999999996	3.69608	1.09541e-4	2.56139e-6	0.00942341	0.00101846
chr1	1690375	1690475	360940	0	-	0.37	(0.35,0.378]	chr1	42013	132	INTRON	INTRON	SLC35E2B	ENSG00000189339.12	ENST00000614300.4:ENST00000617444.5:ENST00000611123.1:ENST00000481276.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	41	2	1.87717	3.27323	4.66929	0.0555068	0.00541617	0.165463	0.066545000000000007
chr15	63769343	63769442	6200255	0	-	0.535354	(0.515,0.57]	chr15	591427	48	INTRON	INTRON	HERC1	ENSG00000103657.14	ENST00000443617.7:ENST00000561400.1:ENST00000559886.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	24	2	2.46104	3.2732099999999997	4.08538	0.032841	0.0253843	0.145164	0.12011
chr15	68810745	68810845	6214875	0	-	0.55	(0.515,0.57]	chr15	593024	186	INTRON	INTRON	ANP32A	ENSG00000140350.15	ENST00000465139.6:ENST00000409628.6:ENST00000267918.9:ENST00000560303.1:ENST00000495420.5:ENST00000495764.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	24	2	2.46104	3.2732099999999997	4.08538	0.032841	0.0253843	0.145164	0.12011
chr16	339054	339154	6426720	0	-	0.53	(0.515,0.57]	chr16	617500	240	INTRON	INTRON	AXIN1	ENSG00000103126.15	ENST00000262320.8:ENST00000461023.5:ENST00000354866.7:ENST00000481769.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	24	2	2.46104	3.2732099999999997	4.08538	0.032841	0.0253843	0.145164	0.12011
chr16	15638394	15638491	6451669	0	-	0.525773	(0.515,0.57]	chr16	621887	17	INTRON	INTRON	MARF1	ENSG00000166783.22	ENST00000396368.8:ENST00000540441.6:ENST00000548025.5:ENST00000551742.5:ENST00000552553.5:ENST00000548216.2:ENST00000549219.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	24	2	2.46104	3.2732099999999997	4.08538	0.032841	0.0253843	0.145164	0.12011
chr17	81668062	81668162	6690910	0	+	0.53	(0.515,0.57]	chr17	653964	2	SS5_PROX	SS5_PROX:INTRON	CCDC137	ENSG00000185298.13	ENST00000329214.13:ENST00000575223.5:ENST00000574107.1:ENST00000574200.1:ENST00000571916.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	24	2	2.46104	3.2732099999999997	4.08538	0.032841	0.0253843	0.145164	0.12011
chr2	15600794	15600890	703877	0	+	0.541667	(0.515,0.57]	chr2	81643	7	INTRON	INTRON	DDX1	ENSG00000079785.16	ENST00000381341.7:ENST00000677302.1:ENST00000434671.2:ENST00000676759.1:ENST00000478695.2:ENST00000678786.1:ENST00000678536.1:ENST00000679227.1:ENST00000678755.1:ENST00000676937.1:ENST00000676916.1:ENST00000617198.5:ENST00000233084.8:ENST00000677437.1:ENST00000678137.1:ENST00000678594.1:ENST00000459706.2:ENST00000677355.1:ENST00000470674.2:ENST00000676635.1:ENST00000677552.1:ENST00000621973.2:ENST00000678391.1:ENST00000677649.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	24	2	2.46104	3.2732099999999997	4.08538	0.032841	0.0253843	0.145164	0.12011
chr20	49061516	49061614	7283939	0	+	0.561224	(0.515,0.57]	chr20	740820	26	INTRON	INTRON	CSE1L	ENSG00000124207.17	ENST00000396192.7:ENST00000262982.3	protein_coding	protein_coding	protein_coding	protein_coding	1	24	2	2.46104	3.2732099999999997	4.08538	0.032841	0.0253843	0.145164	0.12011
chr21	7441125	7441225	7365714	0	+	0.52	(0.515,0.57]	chr21	751728	99	INTRON	INTRON	ENSG00000276077	ENSG00000276077.4	ENST00000617062.4:ENST00000625096.3:ENST00000624791.1:ENST00000624907.3:ENST00000624461.3:ENST00000625115.1	lncRNA	lncRNA	lncRNA	lncRNA	1	24	2	2.46104	3.2732099999999997	4.08538	0.032841	0.0253843	0.145164	0.12011
chr9	33899375	33899474	4111050	0	+	0.535354	(0.515,0.57]	chr9	374694	121	INTRON	INTRON	UBE2R2	ENSG00000107341.5	ENST00000263228.4	protein_coding	protein_coding	protein_coding	protein_coding	1	24	2	2.46104	3.2732099999999997	4.08538	0.032841	0.0253843	0.145164	0.12011
chr21	33541764	33541864	7441394	0	-	0.37	(0.35,0.378]	chr21	759500	3	SS5_PROX	SS5_PROX:INTRON	GART	ENSG00000159131.17	ENST00000381839.7:ENST00000381831.7:ENST00000424203.5:ENST00000381815.9:ENST00000361093.9:ENST00000430874.5:ENST00000426819.5:ENST00000476524.1:ENST00000438059.5:ENST00000441403.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	32	2	2.60341	3.27316	3.94291	0.0374229	0.0275785	0.155878	0.123904
chr9	113408219	113408317	4320230	0	-	0.357143	(0.35,0.378]	chr9	397543	11	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	POLE3	ENSG00000148229.13	ENST00000374171.5:ENST00000374169.7:ENST00000479871.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	32	2	2.60341	3.27316	3.94291	0.0374229	0.0275785	0.155878	0.123904
chr22	37872083	37872182	7511925	0	+	0.383838	(0.378,0.408]	chr22	767200	9	INTRON	INTRON	EIF3L	ENSG00000100129.18	ENST00000412331.6:ENST00000624234.3:ENST00000381683.10:ENST00000652021.1:ENST00000477256.5:ENST00000406934.5:ENST00000482600.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	61	2	3.22599	3.273075	3.32016	0.00288652	0.00268328	0.0494641	0.0464781
chr2	191678418	191678516	960362	0	+	0.55102	(0.515,0.57]	chr2	104274	4	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NABP1	ENSG00000173559.15	ENST00000491331.5:ENST00000307834.9:ENST00000674262.1:ENST00000674360.1:ENST00000674406.1:ENST00000674414.1:ENST00000410026.7:ENST00000674172.1:ENST00000674187.1:ENST00000307849.7:ENST00000425611.9:ENST00000462712.5:ENST00000451500.5:ENST00000409510.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	21	425	2	3.24389	3.273065	3.30224	1.49846e-7	1.37739e-7	1.86596e-4	1.68566e-4
chr1	247307674	247307774	684212	0	-	0.41	(0.408,0.44]	chr1	80215	60	INTRON	INTRON	ZNF496	ENSG00000162714.13	ENST00000294753.8:ENST00000462139.1:ENST00000682384.1:ENST00000461277.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	29	2	2.43988	3.2729100000000004	4.10594	0.0398236	0.0219367	0.143072	0.123836
chr12	57351075	57351175	5338458	0	-	0.44	(0.408,0.44]	chr12	510710	97	INTRON	INTRON	R3HDM2	ENSG00000179912.21	ENST00000402412.6:ENST00000347140.7:ENST00000634871.1:ENST00000448732.1	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	2.43988	3.2729100000000004	4.10594	0.0398236	0.0219367	0.143072	0.123836
chr17	46347939	46348038	6785950	0	-	0.414141	(0.408,0.44]	chr17	669312	78	INTRON	INTRON	ARL17B	ENSG00000228696.10	ENST00000570618.5:ENST00000656849.1:ENST00000434041.6:ENST00000572991.5:ENST00000622877.4:ENST00000575698.5:ENST00000575960.5:ENST00000571246.5:ENST00000450673.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	29	2	2.43988	3.2729100000000004	4.10594	0.0398236	0.0219367	0.143072	0.123836
chr2	97847151	97847250	1185299	0	-	0.414141	(0.408,0.44]	chr2	127283	25	INTRON	INTRON	TMEM131	ENSG00000075568.17	ENST00000186436.10:ENST00000418629.6:ENST00000438715.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	29	2	2.43988	3.2729100000000004	4.10594	0.0398236	0.0219367	0.143072	0.123836
chr21	33347054	33347153	7396514	0	+	0.414141	(0.408,0.44]	chr21	753409	13	INTRON	INTRON	IFNAR1	ENSG00000142166.13	ENST00000652450.1:ENST00000270139.8:ENST00000442071.2:ENST00000652513.1:ENST00000652601.1	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	2.43988	3.2729100000000004	4.10594	0.0398236	0.0219367	0.143072	0.123836
chr7	121373932	121374031	3630676	0	-	0.424242	(0.408,0.44]	chr7	337377	14	INTRON	INTRON	FAM3C	ENSG00000196937.11	ENST00000359943.8:ENST00000412653.5:ENST00000426156.1	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	2.43988	3.2729100000000004	4.10594	0.0398236	0.0219367	0.143072	0.123836
chr9	105738889	105738989	4182988	0	+	0.44	(0.408,0.44]	chr9	381513	159	INTRON	INTRON	TMEM38B	ENSG00000095209.12	ENST00000374692.8:ENST00000374688.5:ENST00000435034.5:ENST00000451560.1	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	2.43988	3.2729100000000004	4.10594	0.0398236	0.0219367	0.143072	0.123836
chr11	3928299	3928399	4724193	0	+	0.53	(0.515,0.57]	chr11	437144	60	INTRON	INTRON	STIM1	ENSG00000167323.12	ENST00000525403.5:ENST00000526596.2:ENST00000300737.8:ENST00000616714.4:ENST00000527651.5:ENST00000532610.5:ENST00000532919.5:ENST00000530554.5:ENST00000524822.5:ENST00000528656.5:ENST00000525055.5	protein_coding	protein_coding	protein_coding	protein_coding	1	24	2	2.23241	3.2728349999999997	4.31326	0.0581268	0.0141817	0.188651	0.0959618
chr12	64624838	64624938	5155141	0	+	0.53	(0.515,0.57]	chr12	488093	133	INTRON	INTRON	RASSF3	ENSG00000153179.13	ENST00000637125.1:ENST00000542104.6:ENST00000283172.8:ENST00000336061.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	24	2	2.23241	3.2728349999999997	4.31326	0.0581268	0.0141817	0.188651	0.0959618
chr14	30985382	30985481	5857463	0	-	0.525253	(0.515,0.57]	chr14	556508	210	INTRON	INTRON	STRN3	ENSG00000196792.12	ENST00000355683.9:ENST00000357479.10:ENST00000555358.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	24	2	2.23241	3.2728349999999997	4.31326	0.0581268	0.0141817	0.188651	0.0959618
chr17	78674544	78674643	6844732	0	-	0.565657	(0.515,0.57]	chr17	677248	6	UTR3	UTR3:EXON_MRNA	CYTH1	ENSG00000108669.17	ENST00000589296.5:ENST00000361101.8:ENST00000446868.8:ENST00000591455.5:ENST00000589297.5:ENST00000585509.5:ENST00000586299.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	24	2	2.23241	3.2728349999999997	4.31326	0.0581268	0.0141817	0.188651	0.0959618
chr2	169584816	169584899	906474	0	+	0.542169	(0.515,0.57]	chr2	100014	4	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	PPIG	ENSG00000138398.17	ENST00000678088.1:ENST00000677392.1:ENST00000433207.6:ENST00000679324.1:ENST00000414307.6:ENST00000676508.1:ENST00000260970.8:ENST00000678695.1:ENST00000409714.7:ENST00000530152.5:ENST00000677750.1:ENST00000676557.1:ENST00000678721.1:ENST00000462903.6:ENST00000676756.1:ENST00000679107.1:ENST00000678499.1:ENST00000678638.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	24	2	2.23241	3.2728349999999997	4.31326	0.0581268	0.0141817	0.188651	0.0959618
chr5	37486474	37486574	2341467	0	+	0.55	(0.515,0.57]	chr5	226248	61	INTRON	INTRON	WDR70	ENSG00000082068.9	ENST00000504564.1:ENST00000511906.5:ENST00000265107.9:ENST00000510699.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	24	2	2.23241	3.2728349999999997	4.31326	0.0581268	0.0141817	0.188651	0.0959618
chr7	139711135	139711235	3658166	0	-	0.54	(0.515,0.57]	chr7	339537	791	INTRON	INTRON	HIPK2	ENSG00000064393.16	ENST00000406875.8:ENST00000428878.6:ENST00000342645.7	protein_coding	protein_coding	protein_coding	protein_coding	1	24	2	2.23241	3.2728349999999997	4.31326	0.0581268	0.0141817	0.188651	0.0959618
chr9	87505621	87505720	4149889	0	+	0.545455	(0.515,0.57]	chr9	378543	61	INTRON	INTRON	DAPK1	ENSG00000196730.13	ENST00000358077.9:ENST00000469640.6:ENST00000472284.5:ENST00000469067.5:ENST00000495182.5:ENST00000408954.8:ENST00000622514.4:ENST00000496522.5:ENST00000472344.1:ENST00000491893.5:ENST00000489291.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	24	2	2.23241	3.2728349999999997	4.31326	0.0581268	0.0141817	0.188651	0.0959618
chr6	43567854	43567943	3097253	0	-	0.505618	(0.476,0.515]	chr6	290103	1	INTRON	INTRON	XPO5	ENSG00000124571.18	ENST00000265351.12	protein_coding	protein_coding	protein_coding	protein_coding	2	58	2	3.05152	3.272815	3.49411	0.0064848	9.23453e-4	0.0699952	0.0278392
chr11	63873562	63873662	4801217	0	+	0.48	(0.476,0.515]	chr11	445045	38	INTRON	INTRON	MARK2	ENSG00000072518.22	ENST00000377810.8:ENST00000361128.9:ENST00000508192.5:ENST00000350490.11:ENST00000402010.8:ENST00000502399.7:ENST00000425897.3:ENST00000679216.1:ENST00000513765.7:ENST00000543220.5:ENST00000543674.1:ENST00000540169.5	protein_coding	protein_coding	protein_coding	protein_coding	2	58	2	3.24596	3.272675	3.29939	0.00322919	0.00211868	0.0507087	0.0425644
chr10	102326820	102326920	4513466	0	+	0.36	(0.35,0.378]	chr10	415737	4	SS5_PROX	SS5_PROX:INTRON	GBF1	ENSG00000107862.7	ENST00000676513.1:ENST00000676939.1:ENST00000677439.1:ENST00000677240.1:ENST00000677618.1:ENST00000679155.1:ENST00000679280.1:ENST00000678036.1:ENST00000678476.1:ENST00000678504.1:ENST00000677247.1:ENST00000677655.1:ENST00000678351.1:ENST00000679238.1:ENST00000677487.1:ENST00000677506.1:ENST00000678666.1:ENST00000676560.1:ENST00000673650.1:ENST00000674034.1:ENST00000369983.5:ENST00000679003.1:ENST00000678486.1:ENST00000676682.1:ENST00000676807.1:ENST00000676993.1:ENST00000678575.1:ENST00000677522.1:ENST00000678293.1:ENST00000679087.1:ENST00000677683.1:ENST00000676861.1:ENST00000677491.1:ENST00000677461.1:ENST00000677871.1:ENST00000677431.1:ENST00000677852.1:ENST00000678401.1:ENST00000677956.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	30	2	2.24535	3.2724800000000003	4.29961	0.0647516	0.0158483	0.179192	0.109464
chr11	65271117	65271216	4804809	0	+	0.363636	(0.35,0.378]	chr11	446353	20	INTRON	INTRON	POLA2	ENSG00000014138.9	ENST00000527850.5:ENST00000532469.1:ENST00000265465.8:ENST00000532391.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	30	2	2.24535	3.2724800000000003	4.29961	0.0647516	0.0158483	0.179192	0.109464
chr14	67935331	67935431	5766529	0	+	0.37	(0.35,0.378]	chr14	547062	261	INTRON	INTRON	RAD51B	ENSG00000182185.19	ENST00000487861.5:ENST00000471583.6:ENST00000479335.5:ENST00000487270.5:ENST00000488612.5:ENST00000553595.5:ENST00000497460.5:ENST00000492236.5:ENST00000554244.5:ENST00000478014.5:ENST00000469165.6:ENST00000460526.5:ENST00000468382.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	30	2	2.24535	3.2724800000000003	4.29961	0.0647516	0.0158483	0.179192	0.109464
chr3	47681106	47681205	1684053	0	-	0.353535	(0.35,0.378]	chr3	172040	2	INTRON	INTRON	SMARCC1	ENSG00000173473.11	ENST00000254480.10:ENST00000425518.5:ENST00000462198.5:ENST00000485737.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	30	2	2.24535	3.2724800000000003	4.29961	0.0647516	0.0158483	0.179192	0.109464
chr7	139758807	139758907	3658644	0	-	0.36	(0.35,0.378]	chr7	339545	414	INTRON	INTRON	HIPK2	ENSG00000064393.16	ENST00000406875.8:ENST00000428878.6	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	2.24535	3.2724800000000003	4.29961	0.0647516	0.0158483	0.179192	0.109464
chrX	123625911	123625990	7877956	0	-	0.35443	(0.35,0.378]	chrX	802458	1	CDS	CDS:EXON_MRNA	THOC2	ENSG00000125676.20	ENST00000245838.13:ENST00000355725.8:ENST00000491737.5:ENST00000438358.1	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	2.24535	3.2724800000000003	4.29961	0.0647516	0.0158483	0.179192	0.109464
chr2	241682609	241682698	1349396	0	-	0.494382	(0.476,0.515]	chr2	141806	3	SS3_PROX	SS3_PROX:SS5_PROX:INTRON	DTYMK	ENSG00000168393.13	ENST00000400770.6:ENST00000305784.7:ENST00000445261.5:ENST00000432348.5:ENST00000420144.1:ENST00000493095.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	143	2	2.81275	3.272425	3.7321	2.81185e-4	1.52889e-5	0.015437	0.00293847
chr3	143013910	143014010	1529201	0	+	0.42	(0.408,0.44]	chr3	159342	2	SS3_PROX	SS3_PROX:INTRON	U2SURP	ENSG00000163714.18	ENST00000600150.5:ENST00000488497.7:ENST00000493782.5:ENST00000473835.7:ENST00000461591.5:ENST00000493598.6:ENST00000463563.6:ENST00000470400.5:ENST00000465175.2:ENST00000485374.5:ENST00000491827.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	36	2	2.21238	3.27238	4.33238	0.0218901	0.0193525	0.119831	0.11491
chr11	74971489	74971589	4830333	0	+	0.49	(0.476,0.515]	chr11	450690	14	INTRON	INTRON	SPCS2	ENSG00000118363.13	ENST00000530257.5:ENST00000526361.1:ENST00000532972.5:ENST00000263672.11:ENST00000528265.1:ENST00000527225.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	36	2	2.19809	3.272285	4.34648	0.020317	0.0193566	0.121522	0.108861
chr2	39291696	39291792	1102817	0	-	0.489583	(0.476,0.515]	chr2	118401	10	INTRON	INTRON	MAP4K3	ENSG00000011566.15	ENST00000263881.8:ENST00000437545.5:ENST00000341681.9:ENST00000497566.5:ENST00000474502.5:ENST00000465701.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	36	2	2.19809	3.272285	4.34648	0.020317	0.0193566	0.121522	0.108861
chr1	213131687	213131787	311511	0	+	0.53	(0.515,0.57]	chr1	35945	14	INTRON	INTRON	RPS6KC1	ENSG00000136643.12	ENST00000615329.4:ENST00000543354.5:ENST00000614059.4:ENST00000543470.5:ENST00000366960.8:ENST00000366959.4:ENST00000490299.5:ENST00000468069.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	39	2	1.94493	3.2720350000000002	4.59914	0.0204583	0.00616166	0.122204	0.0676501
chr16	21511032	21511132	6461467	0	-	0.54	(0.515,0.57]	chr16	623383	45	INTRON	INTRON	SMG1P3	ENSG00000180747.15	ENST00000522841.6:ENST00000437413.2:ENST00000435197.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	3	39	2	1.94493	3.2720350000000002	4.59914	0.0204583	0.00616166	0.122204	0.0676501
chr9	133364652	133364739	4370329	0	-	0.494253	(0.476,0.515]	chr9	402175	4	SS5_PROX	SS5_PROX:INTRON	SURF4	ENSG00000148248.14	ENST00000545297.5:ENST00000613129.4:ENST00000618229.4:ENST00000371989.8:ENST00000485435.6:ENST00000465565.1:ENST00000467910.5:ENST00000371991.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	254	2	3.02178	3.27197	3.52216	6.09388e-6	4.32602e-6	0.00173029	0.00151645
chr8	42530277	42530377	3942465	0	-	0.29	(0.28,0.32]	chr8	361320	278	INTRON	INTRON	SLC20A2	ENSG00000168575.10	ENST00000342228.7:ENST00000520179.5:ENST00000524211.1:ENST00000518717.1:ENST00000518384.1:ENST00000524237.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	74	2	2.82769	3.271925	3.71616	0.0169391	4.76221e-4	0.103888	0.0197443
chr17	27461454	27461554	6580815	0	+	0.56	(0.515,0.57]	chr17	639655	42	INTRON	INTRON	KSR1	ENSG00000141068.15	ENST00000644974.2:ENST00000579309.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	32	2	2.03361	3.2718049999999996	4.51	0.0325854	0.00809449	0.145164	0.0766625
chr22	29268942	29269035	7496063	0	+	0.548387	(0.515,0.57]	chr22	764789	2	INTRON	INTRON	EWSR1	ENSG00000182944.18	ENST00000629659.2:ENST00000332050.10:ENST00000444626.5:ENST00000447973.5:ENST00000436425.5:ENST00000397938.7:ENST00000406548.5:ENST00000485037.5:ENST00000437155.6:ENST00000415761.5:ENST00000331029.11:ENST00000483415.5:ENST00000414183.6:ENST00000333395.10:ENST00000332035.10:ENST00000455726.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	32	2	2.03361	3.2718049999999996	4.51	0.0325854	0.00809449	0.145164	0.0766625
chr5	40779684	40779784	2610982	0	-	0.38	(0.378,0.408]	chr5	248267	17	INTRON	INTRON	PRKAA1	ENSG00000132356.12	ENST00000397128.7:ENST00000354209.7:ENST00000506652.5:ENST00000509874.5:ENST00000296800.4:ENST00000511248.1:ENST00000397006.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	36	2	2.04292	3.2717400000000003	4.50056	0.0326035	0.015974	0.145164	0.101453
chr12	116096268	116096368	5423729	0	-	0.52	(0.515,0.57]	chr12	518246	2	SS5_PROX	SS5_PROX:INTRON	MED13L	ENSG00000123066.9	ENST00000281928.9:ENST00000650226.1:ENST00000648737.1:ENST00000548743.2:ENST00000647567.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	147	2	3.18731	3.27172	3.35613	7.269e-5	4.42047e-6	0.00767614	0.00141599
chr7	97970830	97970930	3580397	0	-	0.43	(0.408,0.44]	chr7	333362	1	SS3_PROX	SS3_PROX:INTRON	ENSG00000284707:CCZ1P1	ENSG00000284707.2:ENSG00000243554.1	ENST00000641784.1:ENST00000641390.1:ENST00000453589.1	lncRNA	lncRNA	lncRNA:transcribed_unprocessed_pseudogene	lncRNA:transcribed_unprocessed_pseudogene	3	49	2	1.92319	3.27164	4.62009	0.0247322	0.00504155	0.12011	0.0646039
chr5	10405257	10405357	2318181	0	+	0.38	(0.378,0.408]	chr5	224691	3	SS3_PROX	SS3_PROX:INTRON	MARCHF6	ENSG00000145495.16	ENST00000274140.10:ENST00000449913.6:ENST00000511802.5:ENST00000503788.5:ENST00000510792.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	17	287	2	2.39557	3.271615	4.14766	4.58248e-5	2.88205e-6	0.00552351	0.00119813
chr3	72425705	72425805	1745712	0	-	0.39	(0.378,0.408]	chr3	177368	452	INTRON	INTRON	RYBP	ENSG00000163602.12	ENST00000477973.5	protein_coding	protein_coding	protein_coding	protein_coding	4	51	2	1.80483	3.27161	4.73839	0.0201276	0.00837252	0.121243	0.0774402
chr1	220045344	220045444	639182	0	-	0.56	(0.515,0.57]	chr1	75333	47	INTRON	INTRON	EPRS1	ENSG00000136628.18	ENST00000366923.8:ENST00000609181.5:ENST00000477030.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	32	2	1.86007	3.271585	4.6831	0.0526611	0.00471288	0.178401	0.0600108
chr4	40099241	40099339	1954288	0	+	0.540816	(0.515,0.57]	chr4	195694	13	INTRON	INTRON	N4BP2	ENSG00000078177.14	ENST00000261435.11:ENST00000511480.5:ENST00000515550.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	32	2	1.86007	3.271585	4.6831	0.0526611	0.00471288	0.178401	0.0600108
chr1	31360141	31360241	61801	0	+	0.46	(0.44,0.476]	chr1	7865	108	INTRON	INTRON	ZCCHC17	ENSG00000121766.16	ENST00000618216.4:ENST00000546109.5:ENST00000616393.4:ENST00000616859.4:ENST00000615916.4:ENST00000373714.5:ENST00000344147.10:ENST00000627541.1	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	2.20949	3.2714749999999997	4.33346	0.0672585	0.0120349	0.183051	0.0962115
chr1	201991213	201991311	292593	0	+	0.44898	(0.44,0.476]	chr1	33706	13	INTRON	INTRON	RNPEP	ENSG00000176393.11	ENST00000481780.5:ENST00000295640.9:ENST00000367286.7:ENST00000487116.5:ENST00000492587.5:ENST00000471105.5:ENST00000447312.5:ENST00000478617.5:ENST00000479726.5:ENST00000492849.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	28	2	2.20949	3.2714749999999997	4.33346	0.0672585	0.0120349	0.183051	0.0962115
chr12	68736539	68736639	5162378	0	+	0.47	(0.44,0.476]	chr12	488794	8	INTRON	INTRON	NUP107	ENSG00000111581.10	ENST00000378905.6:ENST00000229179.9:ENST00000535718.5:ENST00000539906.5:ENST00000401003.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	28	2	2.20949	3.2714749999999997	4.33346	0.0672585	0.0120349	0.183051	0.0962115
chr15	72692693	72692792	6060534	0	+	0.464646	(0.44,0.476]	chr15	576947	55	INTRON	INTRON	BBS4	ENSG00000140463.14	ENST00000395205.6:ENST00000566400.5:ENST00000565160.5:ENST00000561914.5:ENST00000268057.9:ENST00000567279.5:ENST00000566938.5:ENST00000569440.5:ENST00000563600.5:ENST00000562084.5:ENST00000569338.5:ENST00000566829.1:ENST00000564239.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	28	2	2.20949	3.2714749999999997	4.33346	0.0672585	0.0120349	0.183051	0.0962115
chr5	34179696	34179795	2599881	0	-	0.474747	(0.44,0.476]	chr5	247047	2	INTRON	INTRON	GUSBP18	ENSG00000215158.9	ENST00000514048.5:ENST00000507274.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	1	28	2	2.20949	3.2714749999999997	4.33346	0.0672585	0.0120349	0.183051	0.0962115
chr7	5776705	5776799	3474923	0	-	0.446809	(0.44,0.476]	chr7	324922	12	INTRON	INTRON	RNF216	ENSG00000011275.19	ENST00000425013.6:ENST00000389902.8:ENST00000411812.1:ENST00000416985.5:ENST00000476345.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	28	2	2.20949	3.2714749999999997	4.33346	0.0672585	0.0120349	0.183051	0.0962115
chr7	33032084	33032183	3516120	0	-	0.474747	(0.44,0.476]	chr7	327893	20	INTRON	INTRON	NT5C3A	ENSG00000122643.23	ENST00000456458.5:ENST00000610140.7:ENST00000643244.1:ENST00000409467.6:ENST00000409787.4:ENST00000464840.5:ENST00000449201.5:ENST00000497542.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	28	2	2.20949	3.2714749999999997	4.33346	0.0672585	0.0120349	0.183051	0.0962115
chr9	111412448	111412548	4314554	0	-	0.47	(0.44,0.476]	chr9	396737	3	SS3_PROX	SS3_PROX:INTRON	ECPAS	ENSG00000136813.15	ENST00000684092.1:ENST00000338205.9:ENST00000259335.8:ENST00000602447.5	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	2.20949	3.2714749999999997	4.33346	0.0672585	0.0120349	0.183051	0.0962115
chr9	123515892	123515992	4341866	0	-	0.45	(0.44,0.476]	chr9	399056	540	INTRON	INTRON	DENND1A	ENSG00000119522.17	ENST00000373624.6:ENST00000473039.5:ENST00000394215.7:ENST00000373620.7:ENST00000491650.5:ENST00000497135.5:ENST00000373618.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	28	2	2.20949	3.2714749999999997	4.33346	0.0672585	0.0120349	0.183051	0.0962115
chr12	112454780	112454880	5230160	0	+	0.37	(0.35,0.378]	chr12	495860	1	SS5_PROX	SS5_PROX:INTRON	PTPN11	ENSG00000179295.19	ENST00000688597.1:ENST00000692624.1:ENST00000685487.1:ENST00000690210.1:ENST00000639857.2:ENST00000392597.5:ENST00000687906.1:ENST00000351677.7:ENST00000635625.1:ENST00000530818.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	31	2	2.47065	3.271255	4.07186	0.0386172	0.0279478	0.142656	0.137011
chr18	12948786	12948886	6876164	0	+	0.36	(0.35,0.378]	chr18	681269	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	SEH1L	ENSG00000085415.16	ENST00000592170.5:ENST00000262124.15:ENST00000399892.7:ENST00000585730.5:ENST00000589446.5:ENST00000587761.1:ENST00000588251.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	31	2	2.47065	3.271255	4.07186	0.0386172	0.0279478	0.142656	0.137011
chr5	70227694	70227794	2638063	0	-	0.37	(0.35,0.378]	chr5	250619	15	INTRON	INTRON	GUSBP14	ENSG00000253816.3	ENST00000514522.2	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	3	45	2	1.82281	3.2711699999999997	4.71953	0.0316938	0.0103314	0.144635	0.0850389
chr20	63211372	63211472	7362733	0	-	0.54	(0.515,0.57]	chr20	751230	72	INTRON	INTRON	YTHDF1	ENSG00000149658.18	ENST00000370339.8:ENST00000370334.4	protein_coding	protein_coding	protein_coding	protein_coding	2	34	2	1.9459	3.2711	4.5963	0.0429089	0.00370287	0.148082	0.0561162
chr7	73687886	73687983	3331612	0	+	0.536082	(0.515,0.57]	chr7	309885	4	INTRON	INTRON	BUD23	ENSG00000071462.12	ENST00000432522.5:ENST00000421744.5:ENST00000265758.7:ENST00000496153.5:ENST00000478670.5:ENST00000441822.5:ENST00000436944.5:ENST00000428163.5:ENST00000463307.5:ENST00000423497.5:ENST00000430270.5:ENST00000487006.2:ENST00000430446.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	34	2	1.9459	3.2711	4.5963	0.0429089	0.00370287	0.148082	0.0561162
chr10	11884955	11885054	4556432	0	-	0.585859	(0.57,1]	chr10	420498	103	INTRON	INTRON	PROSER2-AS1	ENSG00000225778.5	ENST00000445498.5	lncRNA	lncRNA	lncRNA	lncRNA	9	97	2	2.8421	3.2709799999999998	3.69986	1.9698e-4	4.35576e-6	0.0122531	0.00152498
chr1	21838051	21838142	397072	0	-	0.494505	(0.476,0.515]	chr1	47450	7	INTRON	INTRON	HSPG2	ENSG00000142798.20	ENST00000374695.8:ENST00000374676.4	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	2.3223	3.27097	4.21964	0.0519312	0.0167715	0.159306	0.110511
chr11	47512815	47512914	4949995	0	-	0.515152	(0.476,0.515]	chr11	464230	56	INTRON	INTRON	CELF1	ENSG00000149187.19	ENST00000310513.10:ENST00000687097.1:ENST00000531165.5:ENST00000532048.5:ENST00000530151.5:ENST00000525841.5:ENST00000528434.5:ENST00000543178.5:ENST00000526419.1:ENST00000528538.5:ENST00000526277.1	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	2.3223	3.27097	4.21964	0.0519312	0.0167715	0.159306	0.110511
chr15	87587090	87587190	6255425	0	-	0.49	(0.476,0.515]	chr15	596826	437	INTRON	INTRON	ENSG00000259560	ENSG00000259560.2	ENST00000665121.1:ENST00000560439.1	lncRNA	lncRNA	lncRNA	lncRNA	1	28	2	2.3223	3.27097	4.21964	0.0519312	0.0167715	0.159306	0.110511
chr16	84062804	84062904	6531637	0	-	0.5	(0.476,0.515]	chr16	632820	1	SS5_PROX	SS5_PROX:INTRON	MBTPS1	ENSG00000140943.18	ENST00000343411.8:ENST00000570064.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	28	2	2.3223	3.27097	4.21964	0.0519312	0.0167715	0.159306	0.110511
chr17	28055396	28055495	6582647	0	+	0.494949	(0.476,0.515]	chr17	639835	66	INTRON	INTRON	NLK	ENSG00000087095.13	ENST00000407008.8:ENST00000496808.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	28	2	2.3223	3.27097	4.21964	0.0519312	0.0167715	0.159306	0.110511
chr3	60167834	60167934	1711292	0	-	0.51	(0.476,0.515]	chr3	176138	871	INTRON	INTRON	FHIT	ENSG00000189283.10	ENST00000492590.6:ENST00000476844.5:ENST00000468189.5:ENST00000488467.5	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	2.3223	3.27097	4.21964	0.0519312	0.0167715	0.159306	0.110511
chr8	52666342	52666440	3950617	0	-	0.479592	(0.476,0.515]	chr8	362343	43	INTRON	INTRON	RB1CC1	ENSG00000023287.13	ENST00000025008.10:ENST00000435644.6:ENST00000521611.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	28	2	2.3223	3.27097	4.21964	0.0519312	0.0167715	0.159306	0.110511
chr8	60209319	60209419	3956173	0	-	0.5	(0.476,0.515]	chr8	362952	4	SS3_PROX	SS3_PROX:INTRON	CA8	ENSG00000178538.10	ENST00000317995.5:ENST00000524872.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	28	2	2.3223	3.27097	4.21964	0.0519312	0.0167715	0.159306	0.110511
chr8	124455226	124455326	3852480	0	+	0.51	(0.476,0.515]	chr8	355035	23	INTRON	INTRON	TRMT12	ENSG00000183665.5	ENST00000521443.1	protein_coding	processed_transcript	protein_coding	processed_transcript	1	28	2	2.3223	3.27097	4.21964	0.0519312	0.0167715	0.159306	0.110511
chrX	138875147	138875247	7900314	0	-	0.5	(0.476,0.515]	chrX	804239	101	INTRON	INTRON	FGF13	ENSG00000129682.16	ENST00000441825.8:ENST00000626909.2:ENST00000436198.5:ENST00000455663.5:ENST00000448673.1:ENST00000421460.1	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	2.3223	3.27097	4.21964	0.0519312	0.0167715	0.159306	0.110511
chr3	13349193	13349292	1617870	0	-	0.646465	(0.57,1]	chr3	167134	55	INTRON	INTRON	NUP210	ENSG00000132182.13	ENST00000254508.7:ENST00000695490.1:ENST00000695491.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	23	2	2.17026	3.27081	4.37136	0.0220522	0.00345135	0.123836	0.0517761
chr6	110998149	110998246	2939465	0	+	0.57732000000000006	(0.57,1]	chr6	276865	5	INTRON	INTRON	RPF2	ENSG00000197498.13	ENST00000368864.8:ENST00000441448.7:ENST00000607388.1:ENST00000425871.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	23	2	2.17026	3.27081	4.37136	0.0220522	0.00345135	0.123836	0.0517761
chr9	136471574	136471674	4374922	0	-	0.63	(0.57,1]	chr9	403080	2	SS5_PROX	SS5_PROX:INTRON	SEC16A	ENSG00000148396.19	ENST00000290037.10:ENST00000313050.11:ENST00000371706.8:ENST00000684901.1:ENST00000690691.1:ENST00000431893.3	protein_coding	protein_coding	protein_coding	protein_coding	5	67	2	3.18398	3.27067	3.35736	8.14057e-5	3.84422e-5	0.00755207	0.00528498
chr17	75144963	75145062	6835984	0	-	0.616162	(0.57,1]	chr17	675456	84	INTRON	INTRON	JPT1	ENSG00000189159.16	ENST00000409753.8:ENST00000476258.5:ENST00000482348.5:ENST00000304834.11:ENST00000356033.8:ENST00000470924.5:ENST00000481094.1:ENST00000481647.5:ENST00000580380.1:ENST00000581874.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	23	2	2.05026	3.270665	4.49107	0.0321326	0.00220544	0.145026	0.0417893
chr12	110332883	110332981	5226621	0	+	0.367347	(0.35,0.378]	chr12	495271	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ATP2A2	ENSG00000174437.18	ENST00000308664.10:ENST00000539276.7:ENST00000377685.9:ENST00000548169.2:ENST00000550262.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	37	2	1.9755	3.2705	4.5655	0.0398617	0.0155464	0.161534	0.100909
chr3	136938487	136938587	1513205	0	+	0.37	(0.35,0.378]	chr3	158212	75	INTRON	INTRON	NCK1	ENSG00000158092.7	ENST00000481752.6:ENST00000288986.6:ENST00000491539.5:ENST00000485096.5:ENST00000488930.5:ENST00000496489.5:ENST00000469404.1:ENST00000467911.1	protein_coding	protein_coding	protein_coding	protein_coding	2	37	2	1.9755	3.2705	4.5655	0.0398617	0.0155464	0.161534	0.100909
chr11	501121	501215	4888821	0	-	0.468085	(0.44,0.476]	chr11	457603	4	EXON_LNCRNA	EXON_LNCRNA:SS3_PROX:INTRON	RNH1	ENSG00000023191.17	ENST00000534797.5:ENST00000397614.5:ENST00000397604.7:ENST00000354420.7:ENST00000397615.6:ENST00000525522.5:ENST00000525701.5:ENST00000533410.5:ENST00000438658.6:ENST00000356187.9:ENST00000524464.5:ENST00000529115.5:ENST00000527485.5:ENST00000529368.5:ENST00000529306.5:ENST00000524780.5:ENST00000531149.1:ENST00000531223.1:ENST00000528713.5:ENST00000532055.5:ENST00000533592.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	118	2	2.48067	3.27045	4.06023	5.78772e-4	9.08057e-5	0.0218339	0.00848604
chr22	38500179	38500269	7588031	0	-	0.233333	[0,0.28]	chr22	776765	3	INTRON	INTRON	DDX17	ENSG00000100201.23	ENST00000403230.3:ENST00000396821.8:ENST00000216019.11:ENST00000432525.5:ENST00000467279.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	47	2	2.24546	3.27041	4.29536	0.0590175	0.0206502	0.167915	0.122348
chr1	66974937	66975033	139953	0	+	0.354167	(0.35,0.378]	chr1	15706	16	INTRON	INTRON	MIER1	ENSG00000198160.15	ENST00000355977.10:ENST00000371018.7:ENST00000357692.6:ENST00000371016.5:ENST00000371014.5:ENST00000401041.6:ENST00000355356.3:ENST00000401042.7	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	2.57049	3.2704050000000002	3.97032	0.0578667	0.0262669	0.167723	0.133676
chr13	52297365	52297465	5598553	0	-	0.36	(0.35,0.378]	chr13	535228	2	SS5_PROX	SS5_PROX:INTRON	TPTE2P2	ENSG00000272281.6	ENST00000605924.5:ENST00000403471.6	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	1	28	2	2.57049	3.2704050000000002	3.97032	0.0578667	0.0262669	0.167723	0.133676
chr17	46098795	46098895	6783922	0	-	0.37	(0.35,0.378]	chr17	669208	37	INTRON	INTRON	KANSL1	ENSG00000120071.15	ENST00000574590.6:ENST00000572904.6:ENST00000432791.7:ENST00000575318.6:ENST00000638275.1:ENST00000262419.10:ENST00000648792.1:ENST00000639531.1:ENST00000639150.1:ENST00000639853.1:ENST00000571698.2:ENST00000639375.1:ENST00000577114.2:ENST00000638269.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	28	2	2.57049	3.2704050000000002	3.97032	0.0578667	0.0262669	0.167723	0.133676
chr21	44134554	44134654	7416283	0	+	0.36	(0.35,0.378]	chr21	756016	4	SS5_PROX	SS5_PROX:INTRON	GATD3	ENSG00000160221.18	ENST00000644251.1:ENST00000645487.1:ENST00000495007.5:ENST00000427803.6:ENST00000493883.5:ENST00000480786.1:ENST00000348499.9:ENST00000291577.11:ENST00000389690.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	28	2	2.57049	3.2704050000000002	3.97032	0.0578667	0.0262669	0.167723	0.133676
chr3	197802424	197802524	1597829	0	+	0.36	(0.35,0.378]	chr3	165560	105	INTRON	INTRON	LRCH3	ENSG00000186001.14	ENST00000443727.1:ENST00000438796.6:ENST00000428136.2:ENST00000425562.7:ENST00000441090.6:ENST00000414675.6:ENST00000334859.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	28	2	2.57049	3.2704050000000002	3.97032	0.0578667	0.0262669	0.167723	0.133676
chr5	138020851	138020940	2730683	0	-	0.370787	(0.35,0.378]	chr5	257012	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	FAM13B	ENSG00000031003.11	ENST00000689681.1:ENST00000033079.7:ENST00000425075.6:ENST00000420893.6:ENST00000514310.5:ENST00000502471.5:ENST00000509596.5:ENST00000508403.5:ENST00000505961.1:ENST00000510804.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	28	2	2.57049	3.2704050000000002	3.97032	0.0578667	0.0262669	0.167723	0.133676
chr8	99119409	99119468	3812326	0	+	0.372881	(0.35,0.378]	chr8	353100	2	EXON_LNCRNA	EXON_LNCRNA:INTRON	VPS13B:ENSG00000253532	ENSG00000132549.20:ENSG00000253532.1	ENST00000496144.5:ENST00000683334.1:ENST00000682853.1:ENST00000357162.7:ENST00000358544.7:ENST00000683619.1:ENST00000441350.2:ENST00000684269.1:ENST00000683869.1:ENST00000682153.1:ENST00000682358.1:ENST00000682145.1:ENST00000355155.6:ENST00000682234.1:ENST00000683486.1:ENST00000684308.1:ENST00000524330.1:ENST00000523226.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA:processed_transcript	1	28	2	2.57049	3.2704050000000002	3.97032	0.0578667	0.0262669	0.167723	0.133676
chrX	129590469	129590568	7721955	0	+	0.373737	(0.35,0.378]	chrX	789828	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	OCRL	ENSG00000122126.18	ENST00000371113.9:ENST00000357121.5:ENST00000693473.1:ENST00000646010.1:ENST00000647245.1:ENST00000646914.1:ENST00000463271.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	28	2	2.57049	3.2704050000000002	3.97032	0.0578667	0.0262669	0.167723	0.133676
chr2	107733745	107733845	1205887	0	-	0.52	(0.515,0.57]	chr2	128532	161	INTRON	INTRON	LINC01885:ENSG00000286769	ENSG00000237880.2:ENSG00000286769.1	ENST00000654481.1:ENST00000669817.1	lncRNA	lncRNA	lncRNA	lncRNA	5	93	2	2.27709	3.2703249999999997	4.26356	0.00275782	1.84244e-5	0.0486216	0.00349761
chr3	186970585	186970684	1586577	0	+	0.353535	(0.35,0.378]	chr3	164332	63	INTRON	INTRON	ST6GAL1	ENSG00000073849.16	ENST00000676786.1:ENST00000169298.8:ENST00000457772.6:ENST00000455441.5:ENST00000427315.5:ENST00000677292.1:ENST00000458216.5:ENST00000430309.5:ENST00000417392.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	63	2	3.08431	3.27026	3.45621	0.0065853	0.0011842	0.0701901	0.031662
chr8	99881292	99881392	4001993	0	-	0.38	(0.378,0.408]	chr8	366176	26	INTRON	INTRON	COX6C	ENSG00000164919.11	ENST00000522934.5:ENST00000520517.5:ENST00000520468.7:ENST00000297564.6:ENST00000517682.6:ENST00000520271.5:ENST00000524245.5:ENST00000522940.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	82	2	2.89518	3.270235	3.64529	0.00190046	4.71767e-4	0.0393643	0.0196294
chr1	42179312	42179411	430859	0	-	0.292929	(0.28,0.32]	chr1	52259	29	UTR3	UTR3:EXON_MRNA	FOXJ3	ENSG00000198815.9	ENST00000372573.5:ENST00000372572.5:ENST00000372571.5:ENST00000361776.5:ENST00000545068.5:ENST00000361346.6	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	2.29724	3.27022	4.2432	0.0554156	0.0479043	0.18407	0.153019
chr1	86727002	86727102	153369	0	+	0.29	(0.28,0.32]	chr1	16905	22	INTRON	INTRON	SH3GLB1	ENSG00000097033.14	ENST00000616170.4:ENST00000535010.5:ENST00000370558.8:ENST00000482504.1	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	2.29724	3.27022	4.2432	0.0554156	0.0479043	0.18407	0.153019
chr1	157010341	157010441	569221	0	-	0.31	(0.28,0.32]	chr1	68657	238	INTRON	INTRON	ARHGEF11	ENSG00000132694.19	ENST00000368194.8:ENST00000361409.2	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	2.29724	3.27022	4.2432	0.0554156	0.0479043	0.18407	0.153019
chr12	46197298	46197377	5315789	0	-	0.316456	(0.28,0.32]	chr12	505661	2	SS5_PROX	SS5_PROX:INTRON	SLC38A1	ENSG00000111371.16	ENST00000398637.10:ENST00000439706.5:ENST00000549049.5:ENST00000546893.5:ENST00000552197.5:ENST00000612161.4	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	2.29724	3.27022	4.2432	0.0554156	0.0479043	0.18407	0.153019
chr12	101702622	101702721	5203061	0	+	0.282828	(0.28,0.32]	chr12	492661	41	INTRON	INTRON	CHPT1	ENSG00000111666.11	ENST00000550385.1:ENST00000229266.8:ENST00000549872.5:ENST00000552351.5:ENST00000549128.5:ENST00000546490.1:ENST00000552215.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	30	2	2.29724	3.27022	4.2432	0.0554156	0.0479043	0.18407	0.153019
chr15	56943983	56944083	6032365	0	+	0.3	(0.28,0.32]	chr15	574663	225	INTRON	INTRON	TCF12	ENSG00000140262.18	ENST00000438423.6:ENST00000267811.9:ENST00000333725.10:ENST00000560190.5:ENST00000559609.5:ENST00000558908.5:ENST00000557843.5:ENST00000557947.5:ENST00000561152.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	30	2	2.29724	3.27022	4.2432	0.0554156	0.0479043	0.18407	0.153019
chr2	20282546	20282646	1076086	0	-	0.3	(0.28,0.32]	chr2	114967	2	SS5_PROX	SS5_PROX:INTRON	PUM2	ENSG00000055917.16	ENST00000338086.9:ENST00000361078.7:ENST00000440577.5	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	2.29724	3.27022	4.2432	0.0554156	0.0479043	0.18407	0.153019
chr2	108451780	108451865	845222	0	+	0.282353	(0.28,0.32]	chr2	94542	3	INTRON	INTRON	GCC2	ENSG00000135968.22	ENST00000687399.1:ENST00000689620.1:ENST00000692969.1:ENST00000688612.1:ENST00000693744.1:ENST00000309863.11:ENST00000692694.1:ENST00000467566.2:ENST00000478207.1:ENST00000687832.1:ENST00000685519.1:ENST00000409821.5:ENST00000482325.5:ENST00000409896.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	30	2	2.29724	3.27022	4.2432	0.0554156	0.0479043	0.18407	0.153019
chr2	222610327	222610426	1332647	0	-	0.313131	(0.28,0.32]	chr2	139834	99	INTRON	INTRON	FARSB	ENSG00000116120.11	ENST00000281828.8	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	2.29724	3.27022	4.2432	0.0554156	0.0479043	0.18407	0.153019
chr3	60411717	60411817	1713731	0	-	0.32	(0.28,0.32]	chr3	176138	3310	INTRON	INTRON	FHIT	ENSG00000189283.10	ENST00000492590.6:ENST00000476844.5:ENST00000468189.5:ENST00000488467.5	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	2.29724	3.27022	4.2432	0.0554156	0.0479043	0.18407	0.153019
chr3	197018952	197019045	1900778	0	-	0.311828	(0.28,0.32]	chr3	190421	1	UTR3	UTR3:EXON_MRNA:INTRON	MELTF	ENSG00000163975.14	ENST00000296350.10:ENST00000696016.1:ENST00000296351.8	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	2.29724	3.27022	4.2432	0.0554156	0.0479043	0.18407	0.153019
chr5	235536	235635	2312391	0	+	0.30303	(0.28,0.32]	chr5	223664	3	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	SDHA	ENSG00000073578.18	ENST00000504309.5:ENST00000505555.5:ENST00000510361.5:ENST00000264932.11:ENST00000514027.5:ENST00000515752.5:ENST00000512962.5:ENST00000511810.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	30	2	2.29724	3.27022	4.2432	0.0554156	0.0479043	0.18407	0.153019
chr5	53892171	53892271	2616724	0	-	0.32	(0.28,0.32]	chr5	248833	44	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	30	2	2.29724	3.27022	4.2432	0.0554156	0.0479043	0.18407	0.153019
chr5	139295397	139295497	2499396	0	+	0.31	(0.28,0.32]	chr5	238910	4	SS5_PROX	SS5_PROX:INTRON	MATR3	ENSG00000280987.4:ENSG00000015479.20	ENST00000509990.5:ENST00000506147.5:ENST00000512107.5:ENST00000361059.7:ENST00000394800.6:ENST00000502929.5:ENST00000504203.5:ENST00000514694.5:ENST00000509644.5:ENST00000505016.2:ENST00000502394.1:ENST00000512876.5:ENST00000513678.5:ENST00000513121.1:ENST00000504045.5:ENST00000504311.5:ENST00000502499.5:ENST00000510056.5:ENST00000511249.5:ENST00000394805.8:ENST00000507860.1:ENST00000509918.5:ENST00000503811.5:ENST00000511978.5:ENST00000618441.5:ENST00000508689.1:ENST00000514528.5:ENST00000504643.5:ENST00000514488.1:ENST00000503340.1:ENST00000504023.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	30	2	2.29724	3.27022	4.2432	0.0554156	0.0479043	0.18407	0.153019
chr6	145810611	145810710	3244040	0	-	0.313131	(0.28,0.32]	chr6	301281	38	INTRON	INTRON	FBXO30	ENSG00000118496.5	ENST00000237281.5	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	2.29724	3.27022	4.2432	0.0554156	0.0479043	0.18407	0.153019
chr9	40100358	40100458	4259056	0	-	0.29	(0.28,0.32]	chr9	391902	1094	INTRON	INTRON	ENSG00000284116	ENSG00000284116.1	ENST00000639363.1	lncRNA	lncRNA	lncRNA	lncRNA	1	30	2	2.29724	3.27022	4.2432	0.0554156	0.0479043	0.18407	0.153019
chr7	75413857	75413954	3338226	0	+	0.474227	(0.44,0.476]	chr7	310814	12	EXON_LNCRNA	EXON_LNCRNA:INTRON	NSUN5P1	ENSG00000223705.10	ENST00000691741.1:ENST00000687920.1:ENST00000393633.6:ENST00000687621.1:ENST00000689022.1:ENST00000691865.1:ENST00000688076.1:ENST00000693166.1:ENST00000457988.5:ENST00000689132.1:ENST00000691132.1:ENST00000692954.1:ENST00000455158.5:ENST00000421140.6:ENST00000693244.1:ENST00000422386.5:ENST00000464979.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	6	143	2	2.71023	3.270205	3.83018	4.94929e-4	8.00631e-6	0.020683	0.00202764
chr2	177536678	177536777	927551	0	+	0.323232	(0.32,0.35]	chr2	101909	119	INTRON	INTRON	AGPS	ENSG00000018510.18	ENST00000679459.1:ENST00000637633.2:ENST00000681752.1:ENST00000681565.1:ENST00000680893.1:ENST00000681032.1:ENST00000679421.1:ENST00000409888.1:ENST00000642466.2:ENST00000264167.11:ENST00000680155.1:ENST00000679478.1:ENST00000681449.1:ENST00000681891.1:ENST00000681028.1:ENST00000680028.1:ENST00000679994.1:ENST00000680390.1:ENST00000681300.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	32	2	2.37794	3.2699	4.16186	0.0498601	0.026079	0.156383	0.133676
chr4	123144971	123145071	2037864	0	+	0.34	(0.32,0.35]	chr4	202384	428	INTRON	INTRON	SPATA5	ENSG00000145375.9	ENST00000675612.1:ENST00000274008.5	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	2.37794	3.2699	4.16186	0.0498601	0.026079	0.156383	0.133676
chr7	152256615	152256715	3679484	0	-	0.33	(0.32,0.35]	chr7	341597	35	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682916.1:ENST00000682280.1:ENST00000680039.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	32	2	2.37794	3.2699	4.16186	0.0498601	0.026079	0.156383	0.133676
chrX	113908299	113908399	7867122	0	-	0.35	(0.32,0.35]	chrX	801544	2921	EXON_LNCRNA	EXON_LNCRNA:INTRON	XACT	ENSG00000241743.4	ENST00000468762.3:ENST00000674361.1	lncRNA	lncRNA	lncRNA	lncRNA	1	32	2	2.37794	3.2699	4.16186	0.0498601	0.026079	0.156383	0.133676
chrX	118631881	118631980	7709571	0	+	0.333333	(0.32,0.35]	chrX	788842	10	INTRON	INTRON	DOCK11	ENSG00000147251.16	ENST00000276202.9:ENST00000276204.10:ENST00000633080.1	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	2.37794	3.2699	4.16186	0.0498601	0.026079	0.156383	0.133676
chr11	74903641	74903741	4988747	0	-	0.46	(0.44,0.476]	chr11	471326	397	INTRON	INTRON	XRRA1	ENSG00000166435.16	ENST00000530562.5:ENST00000340360.10:ENST00000321448.12:ENST00000684022.1:ENST00000531849.5:ENST00000527087.5:ENST00000531449.5:ENST00000529926.1:ENST00000528819.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	58	2	3.12799	3.269875	3.41176	0.0050635	0.00130987	0.0621733	0.0333932
chr9	112086134	112086234	4315877	0	-	0.47	(0.44,0.476]	chr9	396924	56	INTRON	INTRON	SUSD1	ENSG00000106868.17	ENST00000374270.8:ENST00000374263.7:ENST00000355396.7:ENST00000374264.6:ENST00000529933.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	58	2	3.12799	3.269875	3.41176	0.0050635	0.00130987	0.0621733	0.0333932
chr17	22113590	22113690	6578799	0	+	0.32	(0.28,0.32]	chr17	639556	223	INTRON	INTRON	UBBP4	ENSG00000263563.7	ENST00000648259.1:ENST00000688301.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	5	64	2	1.49395	3.26987	5.04579	0.0423482	0.00714672	0.161744	0.0723634
chr2	15463080	15463178	1072168	0	-	0.459184	(0.44,0.476]	chr2	114378	9	INTRON	INTRON	NBAS	ENSG00000151779.13	ENST00000281513.10	protein_coding	protein_coding	protein_coding	protein_coding	2	59	2	2.86231	3.26985	3.67739	0.012214	3.8961e-4	0.0910127	0.0177751
chr7	153385040	153385140	3681922	0	-	0.51	(0.476,0.515]	chr7	341711	68	INTRON	INTRON	LINC01287	ENSG00000234722.5	ENST00000647863.1:ENST00000453187.2:ENST00000664249.1:ENST00000663745.1:ENST00000659532.1	lncRNA	lncRNA	lncRNA	lncRNA	2	39	2	2.10874	3.269835	4.43093	0.0285608	0.00931369	0.12666	0.0855292
chr11	120372614	120372714	4876562	0	+	0.3	(0.28,0.32]	chr11	455798	350	INTRON	INTRON	ARHGEF12	ENSG00000196914.9	ENST00000397843.7:ENST00000356641.7	protein_coding	protein_coding	protein_coding	protein_coding	3	49	2	1.61031	3.2698	4.92929	0.0600513	0.0098607	0.190658	0.0838128
chr3	182918299	182918397	1579157	0	+	0.367347	(0.35,0.378]	chr3	162880	3	UTR3	UTR3:EXON_MRNA	ATP11B	ENSG00000058063.16	ENST00000323116.10:ENST00000498086.5:ENST00000466758.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	51	2	1.49446	3.26979	5.04512	0.054297	0.00393262	0.182243	0.0548259
chr17	16442573	16442673	6562685	0	+	0.49	(0.476,0.515]	chr17	637925	6	INTRON	INTRON	SNHG29	ENSG00000175061.19	ENST00000584177.5:ENST00000665646.1:ENST00000660419.1:ENST00000668333.1:ENST00000664939.1:ENST00000583400.7:ENST00000669136.1:ENST00000580770.5:ENST00000581718.6:ENST00000579473.6:ENST00000581361.5:ENST00000692724.1:ENST00000689691.1:ENST00000686699.1:ENST00000472367.5:ENST00000483588.2:ENST00000478103.6:ENST00000658943.1	lncRNA	lncRNA	lncRNA	lncRNA	3	52	2	2.21025	3.2697000000000003	4.32915	0.0124637	0.00913757	0.0973643	0.0812335
chr7	152282220	152282319	3679744	0	-	0.494949	(0.476,0.515]	chr7	341617	80	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000684262.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	104	2	2.9698	3.26966	3.56952	0.00124841	4.10985e-5	0.0323336	0.00519615
chr17	50748416	50748516	6627279	0	+	0.51	(0.476,0.515]	chr17	647247	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	LUC7L3	ENSG00000108848.16	ENST00000393227.6:ENST00000505658.6:ENST00000240304.5:ENST00000508482.5:ENST00000504065.5:ENST00000509487.1:ENST00000511974.5:ENST00000513969.5:ENST00000503728.1:ENST00000512549.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	190	2	2.66575	3.26964	3.87353	3.03626e-4	7.26559e-7	0.0161199	4.76348e-4
chr21	39346728	39346824	7465681	0	-	0.354167	(0.35,0.378]	chr21	760601	9	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	HMGN1	ENSG00000205581.11	ENST00000492280.5:ENST00000431390.5:ENST00000486741.5:ENST00000380749.10:ENST00000288344.14:ENST00000652622.1:ENST00000436324.5:ENST00000380748.5:ENST00000419378.5:ENST00000489072.5:ENST00000482192.5:ENST00000380747.5:ENST00000485550.5:ENST00000490032.5:ENST00000443046.5:ENST00000464078.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	15	390	2	3.20921	3.26959	3.32997	6.65519e-6	4.91514e-7	0.00194394	3.7713e-4
chr1	11909867	11909927	378958	0	-	0.35	(0.32,0.35]	chr1	44497	2	EXON_SMALL	EXON_SMALL	RNU5E-4P	ENSG00000201801.1	ENST00000364931.1	snRNA	snRNA	snRNA	snRNA	77	2114	2	2.89467	3.269565	3.64446	2.2154e-6	6.69182e-10	0.00103686	5.41199e-6
chr2	201053959	201054058	1311720	0	-	0.333333	(0.32,0.35]	chr2	137309	13	INTRON	INTRON	FAM126B	ENSG00000155744.10	ENST00000681958.1:ENST00000418596.7:ENST00000286181.7:ENST00000498780.5:ENST00000452799.5:ENST00000453765.5:ENST00000446678.5:ENST00000474118.5:ENST00000485636.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	60	2	1.46273	3.2695100000000004	5.07629	0.0451962	0.00468114	0.163755	0.0600108
chr3	177113861	177113960	1871604	0	-	0.323232	(0.32,0.35]	chr3	187408	26	INTRON	INTRON	TBL1XR1	ENSG00000177565.18	ENST00000457928.7:ENST00000430069.5:ENST00000673974.1:ENST00000352800.10:ENST00000422442.6:ENST00000428970.5:ENST00000424913.5:ENST00000437738.5:ENST00000431421.5:ENST00000635794.1:ENST00000630796.2:ENST00000450267.5:ENST00000630833.2:ENST00000431674.5:ENST00000422066.5:ENST00000443315.5:ENST00000627825.2:ENST00000427349.5:ENST00000413084.5:ENST00000637137.1:ENST00000491623.2:ENST00000637544.1:ENST00000636478.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	60	2	1.46273	3.2695100000000004	5.07629	0.0451962	0.00468114	0.163755	0.0600108
chr7	4769746	4769845	3270800	0	+	0.313131	(0.28,0.32]	chr7	303926	74	UTR3	UTR3:EXON_MRNA	FOXK1	ENSG00000164916.11	ENST00000328914.5	protein_coding	protein_coding	protein_coding	protein_coding	5	161	2	3.01897	3.2694349999999996	3.5199	4.87801e-4	8.86821e-5	0.0204446	0.00792076
chr1	146971	147068	352776	0	-	0.453608	(0.44,0.476]	chr1	40806	7	EXON_LNCRNA	EXON_LNCRNA:SS3_PROX:INTRON	ENSG00000241860	ENSG00000241860.7	ENST00000484859.1:ENST00000466557.6	lncRNA	lncRNA	lncRNA	lncRNA	2	59	2	3.14559	3.269405	3.39322	0.00384923	0.00187283	0.0562562	0.0390476
chr19	23789954	23790054	7042705	0	+	0.45	(0.44,0.476]	chr19	702227	26	INTRON	INTRON	RPSAP58	ENSG00000288920.1	ENST00000471224.5:ENST00000692590.1:ENST00000475499.2:ENST00000686829.1:ENST00000689525.1:ENST00000691397.1:ENST00000688405.1:ENST00000687994.1:ENST00000484897.4:ENST00000685490.1:ENST00000462186.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	59	2	3.14559	3.269405	3.39322	0.00384923	0.00187283	0.0562562	0.0390476
chr7	44881837	44881936	3528742	0	-	0.383838	(0.378,0.408]	chr7	329128	57	UTR3	UTR3:EXON_MRNA	PURB	ENSG00000146676.10	ENST00000395699.5	protein_coding	protein_coding	protein_coding	protein_coding	8	149	2	1.8121	3.269355	4.72661	0.00683005	2.73145e-6	0.0748032	0.0011704
chr7	76551722	76551822	3340385	0	+	0.49	(0.476,0.515]	chr7	311169	2	SS5_PROX	SS5_PROX:INTRON	ENSG00000205485	ENSG00000205485.13	ENST00000418663.5:ENST00000450661.1:ENST00000423084.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	3	77	2	3.00507	3.269345	3.53362	0.00102391	8.38796e-4	0.029231300000000002	0.0263691
chr1	35921198	35921297	71044	0	+	0.383838	(0.378,0.408]	chr1	9124	16	UTR3	UTR3:EXON_MRNA	AGO1	ENSG00000092847.13	ENST00000373204.6:ENST00000674426.1:ENST00000674304.1	protein_coding	protein_coding	protein_coding	protein_coding	6	130	2	1.92269	3.26928	4.61587	0.00836891	5.24685e-6	0.0822143	0.00170345
chr5	57244967	57245067	2358774	0	+	0.47	(0.44,0.476]	chr5	227598	74	INTRON	INTRON	GPBP1	ENSG00000062194.16	ENST00000424459.7:ENST00000514387.6:ENST00000506184.7:ENST00000511209.5:ENST00000264779.6:ENST00000513524.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	58	2	3.07862	3.269095	3.45957	0.0060153	0.00106385	0.0674604	0.0300133
chr17	49743389	49743489	6793948	0	-	0.53	(0.515,0.57]	chr17	670424	103	INTRON	INTRON	FAM117A	ENSG00000121104.8	ENST00000240364.7:ENST00000513602.5:ENST00000503855.5:ENST00000514018.5:ENST00000505159.5:ENST00000506156.1:ENST00000515240.5:ENST00000509347.5:ENST00000503720.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	148	2	2.81072	3.269085	3.72745	3.32459e-5	1.71682e-5	0.00461719	0.00332131
chr1	174967327	174967415	265235	0	+	0.375	(0.35,0.378]	chr1	30934	1	EXON_LNCRNA	EXON_LNCRNA:INTRON	RABGAP1L:ENSG00000289425	ENSG00000152061.24:ENSG00000289425.1	ENST00000681986.1:ENST00000325589.9:ENST00000469553.6:ENST00000367687.5:ENST00000347255.6:ENST00000489615.5:ENST00000465412.5:ENST00000392064.6:ENST00000367688.3:ENST00000485114.1:ENST00000686005.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:nonsense_mediated_decay:lncRNA	2	63	2	3.17244	3.26879	3.36514	0.00487788	0.00173699	0.0607461	0.03851
chr8	55784455	55784550	3753901	0	+	0.452632	(0.44,0.476]	chr8	349180	13	INTRON	INTRON	TGS1	ENSG00000137574.11	ENST00000260129.6:ENST00000523948.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	35	2	1.93084	3.268655	4.60647	0.0443175	0.0102339	0.162302	0.0850389
chr12	103796493	103796593	5401356	0	-	0.51	(0.476,0.515]	chr12	515251	2	SS5_PROX	SS5_PROX:INTRON	NT5DC3	ENSG00000111696.12	ENST00000392876.8	protein_coding	protein_coding	protein_coding	protein_coding	5	106	2	2.4029	3.26862	4.13434	0.0016811	5.88252e-5	0.0381232	0.00669884
chr17	31882736	31882835	6752721	0	-	0.40404	(0.378,0.408]	chr17	663769	16	INTRON	INTRON	UTP6	ENSG00000108651.10	ENST00000261708.9:ENST00000477128.5:ENST00000583408.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	27	2	2.54849	3.26858	3.98867	0.0507	0.0273196	0.156383	0.136494
chr2	86970005	86970101	824703	0	+	0.40625	(0.378,0.408]	chr2	92149	3	INTRON	INTRON	RGPD1	ENSG00000187627.17	ENST00000409776.6:ENST00000398193.8:ENST00000641458.2	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	2.54849	3.26858	3.98867	0.0507	0.0273196	0.156383	0.136494
chr2	127872127	127872216	1226157	0	-	0.393258	(0.378,0.408]	chr2	130593	4	INTRON	INTRON	AMMECR1L	ENSG00000144233.11	ENST00000679797.1:ENST00000681549.1:ENST00000272647.10:ENST00000393001.1:ENST00000681313.1:ENST00000679574.1:ENST00000680246.1:ENST00000680886.1:ENST00000680045.1:ENST00000680145.1:ENST00000681844.1:ENST00000680603.1:ENST00000680431.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	27	2	2.54849	3.26858	3.98867	0.0507	0.0273196	0.156383	0.136494
chr2	216516240	216516340	1016250	0	+	0.4	(0.378,0.408]	chr2	108187	123	INTRON	INTRON	RPL37A	ENSG00000197756.10	ENST00000600880.5:ENST00000446558.5:ENST00000598925.5:ENST00000427280.6:ENST00000441179.2	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	2.54849	3.26858	3.98867	0.0507	0.0273196	0.156383	0.136494
chr3	170137562	170137662	1861383	0	-	0.39	(0.378,0.408]	chr3	186639	5	INTRON	INTRON	PHC3	ENSG00000173889.16	ENST00000495893.7:ENST00000494943.5:ENST00000467570.5:ENST00000484931.5:ENST00000479467.5:ENST00000466189.5:ENST00000475729.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	27	2	2.54849	3.26858	3.98867	0.0507	0.0273196	0.156383	0.136494
chr4	73140965	73141057	2159635	0	-	0.402174	(0.378,0.408]	chr4	212718	3	INTRON	INTRON	ANKRD17	ENSG00000132466.20	ENST00000358602.9:ENST00000558247.5:ENST00000330838.10:ENST00000509867.6:ENST00000561029.1:ENST00000514252.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	27	2	2.54849	3.26858	3.98867	0.0507	0.0273196	0.156383	0.136494
chr1	243296077	243296176	345270	0	+	0.474747	(0.44,0.476]	chr1	40225	22	INTRON	INTRON	SDCCAG8	ENSG00000054282.16	ENST00000366541.8:ENST00000482234.1:ENST00000476722.6:ENST00000435549.1:ENST00000496361.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	35	2	1.85146	3.2685500000000003	4.68564	0.0545846	0.00816201	0.182529	0.0766625
chr2	173121354	173121454	920904	0	+	0.47	(0.44,0.476]	chr2	101411	298	INTRON	INTRON	MAP3K20	ENSG00000091436.17	ENST00000539448.5:ENST00000409176.6:ENST00000468408.5:ENST00000338983.7:ENST00000375213.8:ENST00000476618.5:ENST00000422149.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	35	2	1.85146	3.2685500000000003	4.68564	0.0545846	0.00816201	0.182529	0.0766625
chr3	47183890	47183990	1418278	0	+	0.47	(0.44,0.476]	chr3	148980	65	INTRON	INTRON	KIF9-AS1	ENSG00000227398.5	ENST00000429315.3	lncRNA	lncRNA	lncRNA	lncRNA	2	35	2	1.85146	3.2685500000000003	4.68564	0.0545846	0.00816201	0.182529	0.0766625
chr11	68323387	68323487	4816043	0	+	0.49	(0.476,0.515]	chr11	448753	102	INTRON	INTRON	LRP5	ENSG00000162337.12	ENST00000294304.12:ENST00000529993.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	41	2	2.31726	3.26845	4.21964	0.0167715	0.015077	0.110511	0.0994339
chr16	88748883	88748983	6539858	0	-	0.48	(0.476,0.515]	chr16	633993	1	SS5_PROX	SS5_PROX:INTRON	PIEZO1	ENSG00000103335.22	ENST00000301015.14	protein_coding	protein_coding	protein_coding	protein_coding	3	77	2	2.93046	3.268365	3.60627	0.00118985	7.49088e-4	0.031662	0.0251179
chr11	61310604	61310697	4956257	0	-	0.387097	(0.378,0.408]	chr11	465692	3	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	DDB1	ENSG00000167986.15	ENST00000301764.12:ENST00000680367.1:ENST00000681803.1:ENST00000680717.1:ENST00000679712.1:ENST00000680357.1:ENST00000680075.1:ENST00000679588.1:ENST00000680602.1:ENST00000680881.1:ENST00000681188.1:ENST00000535283.6:ENST00000680452.1:ENST00000681935.1:ENST00000680250.1:ENST00000680959.1:ENST00000540166.5:ENST00000679855.1:ENST00000539332.2:ENST00000681368.1:ENST00000543658.5:ENST00000535147.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	65	2	2.53503	3.2683649999999997	4.0017	0.0319942	7.73853e-5	0.13174	0.00735438
chr16	3693971	3694071	6434239	0	-	0.55	(0.515,0.57]	chr16	619370	26	INTRON	INTRON	TRAP1	ENSG00000126602.11	ENST00000246957.10:ENST00000538171.5:ENST00000571804.5:ENST00000574941.5:ENST00000576106.5:ENST00000571011.1:ENST00000570403.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	107	2	3.01498	3.2683	3.52162	1.49781e-4	5.84069e-5	0.0106137	0.00668534
chr1	236601781	236601879	665749	0	-	0.469388	(0.44,0.476]	chr1	78964	18	INTRON	INTRON	HEATR1	ENSG00000119285.11	ENST00000366582.8:ENST00000366581.6	protein_coding	protein_coding	protein_coding	protein_coding	3	78	2	2.78046	3.2682700000000002	3.75608	0.0028389	2.6487e-4	0.0473151	0.0144071
chr11	62645162	62645262	4960359	0	-	0.55	(0.515,0.57]	chr11	466618	47	INTRON	INTRON	GANAB	ENSG00000089597.18	ENST00000346178.8:ENST00000532402.5:ENST00000356638.8:ENST00000540933.5:ENST00000648273.1:ENST00000534779.5:ENST00000534613.5:ENST00000525994.1:ENST00000526210.1:ENST00000526392.1:ENST00000529737.5:ENST00000534419.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	80	2	2.7614899999999998	3.268195	3.7749	6.09302e-4	2.59829e-4	0.0223951	0.0148796
chr1	40404545	40404644	81753	0	+	0.323232	(0.32,0.35]	chr1	10562	73	INTRON	INTRON	SMAP2	ENSG00000084070.12	ENST00000435168.6:ENST00000372718.8:ENST00000372708.5:ENST00000614549.4:ENST00000539317.2	protein_coding	protein_coding	protein_coding	protein_coding	2	39	2	2.07985	3.26807	4.45629	0.0303092	0.0246089	0.143025	0.12011
chr10	75179753	75179851	4464299	0	+	0.336735	(0.32,0.35]	chr10	411789	32	UTR3	UTR3:EXON_MRNA	SAMD8	ENSG00000156671.15	ENST00000671730.1:ENST00000671800.1:ENST00000542569.6:ENST00000649316.2:ENST00000372687.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	39	2	2.07985	3.26807	4.45629	0.0303092	0.0246089	0.143025	0.12011
chr18	32097279	32097378	6887313	0	+	0.323232	(0.32,0.35]	chr18	682655	40	INTRON	INTRON	RNF138	ENSG00000134758.14	ENST00000261593.8:ENST00000585103.5:ENST00000578914.1:ENST00000580519.1:ENST00000578107.5:ENST00000583733.1:ENST00000257190.9:ENST00000580499.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	39	2	2.07985	3.26807	4.45629	0.0303092	0.0246089	0.143025	0.12011
chr2	96827230	96827314	830749	0	+	0.488095	(0.476,0.515]	chr2	92909	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CNNM3	ENSG00000168763.16	ENST00000377060.7:ENST00000305510.4:ENST00000465224.5:ENST00000494595.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	80	2	3.0883	3.26807	3.44784	0.00113238	7.31567e-4	0.0308465	0.0248722
chr2	152652377	152652475	1245838	0	-	0.346939	(0.32,0.35]	chr2	132235	9	UTR3	UTR3:EXON_MRNA	PRPF40A	ENSG00000196504.20	ENST00000410080.8:ENST00000545856.8	protein_coding	protein_coding	protein_coding	protein_coding	2	39	2	2.07985	3.26807	4.45629	0.0303092	0.0246089	0.143025	0.12011
chr6	32973812	32973912	2846465	0	+	0.42	(0.408,0.44]	chr6	268451	4	SS5_PROX	SS5_PROX:INTRON	BRD2	ENSG00000204256.14	ENST00000374825.9:ENST00000469132.2:ENST00000679179.1:ENST00000678778.1:ENST00000449085.4:ENST00000677331.1:ENST00000456339.5:ENST00000678250.1:ENST00000677085.1:ENST00000374831.8:ENST00000495733.5:ENST00000482914.5:ENST00000679099.1:ENST00000464592.6:ENST00000607833.5:ENST00000395287.5:ENST00000449025.5:ENST00000463639.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	79	2	2.85723	3.268045	3.67886	0.00211413	3.86173e-4	0.0415897	0.017761
chr1	179073716	179073814	266158	0	+	0.346939	(0.32,0.35]	chr1	31059	17	UTR3	UTR3:EXON_MRNA	FAM20B	ENSG00000116199.12	ENST00000263733.5	protein_coding	protein_coding	protein_coding	protein_coding	2	68	2	2.84812	3.267935	3.68775	0.0147575	4.66127e-4	0.0983813	0.0195589
chr10	68520795	68520895	4640217	0	-	0.4	(0.378,0.408]	chr10	426805	27	INTRON	INTRON	SLC25A16	ENSG00000122912.15	ENST00000609923.6:ENST00000493963.5:ENST00000491102.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	43	2	1.65821	3.2679150000000003	4.87762	0.0506302	0.00553849	0.17547	0.0648867
chr16	90159797	90159897	6424479	0	+	0.38	(0.378,0.408]	chr16	617221	3	SS5_PROX	SS5_PROX:INTRON	FAM157C	ENSG00000260528.6	ENST00000568070.1:ENST00000570230.1	lncRNA	lncRNA	lncRNA	lncRNA	3	43	2	1.65821	3.2679150000000003	4.87762	0.0506302	0.00553849	0.17547	0.0648867
chr4	110193749	110193849	2227686	0	-	0.38	(0.378,0.408]	chr4	218024	878	INTRON	INTRON	ELOVL6	ENSG00000170522.10	ENST00000394607.7:ENST00000302274.8:ENST00000514184.5:ENST00000506625.5:ENST00000506461.1:ENST00000503885.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	43	2	1.59317	3.267835	4.9425	0.0603812	0.00452675	0.19151	0.0595107
chr9	15496902	15497001	4235942	0	-	0.393939	(0.378,0.408]	chr9	389324	43	INTRON	INTRON	PSIP1	ENSG00000164985.15	ENST00000380738.8:ENST00000380733.9:ENST00000380716.8:ENST00000380715.5:ENST00000397519.6:ENST00000487363.5:ENST00000463712.6:ENST00000488797.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	43	2	1.59317	3.267835	4.9425	0.0603812	0.00452675	0.19151	0.0595107
chr8	104565936	104566035	4014491	0	-	0.626263	(0.57,1]	chr8	367439	336	INTRON	INTRON	LRP12	ENSG00000147650.12	ENST00000424843.6:ENST00000276654.10:ENST00000520770.1:ENST00000519675.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	28	2	2.1643	3.26783	4.37136	0.00941704	0.00345135	0.0861183	0.0517761
chr8	41731881	41731980	3938401	0	-	0.494949	(0.476,0.515]	chr8	361111	35	INTRON	INTRON	ANK1	ENSG00000029534.21	ENST00000347528.8:ENST00000265709.13:ENST00000289734.13	protein_coding	protein_coding	protein_coding	protein_coding	4	94	2	2.45107	3.26771	4.08435	0.00301722	7.63877e-5	0.0507519	0.0078038
chr1	708342	708441	357035	0	-	0.343434	(0.32,0.35]	chr1	41103	42	INTRON	INTRON	ENSG00000230021	ENSG00000230021.10	ENST00000419394.2:ENST00000634337.2:ENST00000635509.2:ENST00000648019.1:ENST00000440200.5:ENST00000441245.5	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	3	91	2	2.81262	3.26769	3.72276	0.00311322	3.96144e-4	0.0498063	0.0178616
chr2	10152329	10152429	691026	0	+	0.28	[0,0.28]	chr2	81105	63	INTRON	INTRON	RRM2	ENSG00000171848.16	ENST00000641498.1:ENST00000646978.1:ENST00000381786.7	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	2	51	2	1.89998	3.267605	4.63523	0.0599553	0.0139836	0.169548	0.10247
chr1	23285194	23285294	399148	0	-	0.37	(0.35,0.378]	chr1	47822	40	EXON_LNCRNA	EXON_LNCRNA	LINC01355	ENSG00000261326.4	ENST00000655082.1:ENST00000647667.1:ENST00000566551.1:ENST00000660265.1:ENST00000666981.1:ENST00000604481.1	lncRNA	lncRNA	lncRNA	lncRNA	2	40	2	2.44701	3.2675850000000004	4.08816	0.046021	0.00900997	0.149888	0.0851009
chr2	96886855	96886955	1182093	0	-	0.52	(0.515,0.57]	chr2	126720	80	INTRON	INTRON	FAM178B	ENSG00000168754.15	ENST00000393526.6:ENST00000490605.3:ENST00000470789.5:ENST00000494172.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	22	438	2	3.17389	3.26741	3.36093	4.13687e-7	3.27004e-8	3.65884e-4	7.13685e-5
chr9	92253648	92253746	4286922	0	-	0.44898	(0.44,0.476]	chr9	394155	3	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	IARS1	ENSG00000196305.19	ENST00000375643.7:ENST00000443024.7:ENST00000447699.7:ENST00000683537.1:ENST00000684726.1:ENST00000683192.1:ENST00000683565.1:ENST00000682756.1:ENST00000684542.1:ENST00000683793.1:ENST00000683817.1:ENST00000682141.1:ENST00000682893.1:ENST00000684557.1:ENST00000498025.2:ENST00000682156.1:ENST00000683017.1:ENST00000627121.3:ENST00000683469.1:ENST00000683495.1:ENST00000682578.1:ENST00000682533.1:ENST00000472894.2:ENST00000684757.1:ENST00000684445.1:ENST00000683376.1:ENST00000683679.1:ENST00000683119.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	33	634	2	2.64189	3.2673550000000002	3.89282	1.93804e-6	3.12887e-8	8.46704e-4	6.38611e-5
chr5	28968370	28968470	2331436	0	+	0.31	(0.28,0.32]	chr5	225139	412	INTRON	INTRON	LINC02109	ENSG00000259786.7	ENST00000658190.1	lncRNA	lncRNA	lncRNA	lncRNA	3	103	2	3.10262	3.26724	3.43186	0.00160646	0.00114045	0.0367961	0.0307966
chr1	75653477	75653577	490212	0	-	0.31	(0.28,0.32]	chr1	58159	106	INTRON	INTRON	ENSG00000230863	ENSG00000230863.3	ENST00000648424.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	2	41	2	2.0243	3.267055	4.50981	0.0364967	0.0275554	0.153759	0.123904
chr1	235291733	235291833	663498	0	-	0.3	(0.28,0.32]	chr1	78552	306	INTRON	INTRON	ARID4B	ENSG00000054267.22	ENST00000349213.7:ENST00000366603.6:ENST00000264183.9:ENST00000421364.5:ENST00000491632.5:ENST00000418304.1:ENST00000466653.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	41	2	2.0243	3.267055	4.50981	0.0364967	0.0275554	0.153759	0.123904
chr16	69638234	69638334	6380735	0	+	0.32	(0.28,0.32]	chr16	613175	58	INTRON	INTRON	NFAT5	ENSG00000102908.22	ENST00000426654.6:ENST00000349945.7:ENST00000354436.6:ENST00000627621.3:ENST00000650987.1:ENST00000567990.5:ENST00000567239.5:ENST00000393742.7:ENST00000565301.2:ENST00000566899.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	41	2	2.0243	3.267055	4.50981	0.0364967	0.0275554	0.153759	0.123904
chrX	44923384	44923484	7649104	0	+	0.32	(0.28,0.32]	chrX	782726	490	INTRON	INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000675440.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000621147.5:ENST00000475233.1:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	41	2	2.0243	3.267055	4.50981	0.0364967	0.0275554	0.153759	0.123904
chr6	85512402	85512502	3150073	0	-	0.52	(0.515,0.57]	chr6	293675	42	EXON_MRNA	EXON_MRNA:INTRON	ENSG00000271793:SNX14	ENSG00000271793.2:ENSG00000135317.14	ENST00000682083.1:ENST00000683074.1:ENST00000681965.1:ENST00000682171.1:ENST00000684150.1:ENST00000683785.1:ENST00000682497.1:ENST00000684647.1:ENST00000683643.1:ENST00000682023.1:ENST00000682022.1:ENST00000683542.1:ENST00000683126.1:ENST00000683857.1:ENST00000683898.1:ENST00000682854.1:ENST00000682491.1:ENST00000682174.1:ENST00000684239.1:ENST00000682939.1:ENST00000684570.1:ENST00000682057.1:ENST00000682878.1:ENST00000683880.1:ENST00000684422.1:ENST00000682504.1:ENST00000683726.1:ENST00000684680.1:ENST00000683196.1:ENST00000683458.1:ENST00000683803.1:ENST00000684281.1:ENST00000682991.1:ENST00000683754.1:ENST00000683481.1:ENST00000682455.1:ENST00000682034.1:ENST00000684451.1:ENST00000683583.1:ENST00000682776.1:ENST00000683873.1:ENST00000683878.1:ENST00000683195.1:ENST00000682995.1:ENST00000682374.1:ENST00000683698.1:ENST00000682454.1:ENST00000682694.1:ENST00000682412.1:ENST00000514801.2:ENST00000682926.1:ENST00000682682.1:ENST00000418862.2:ENST00000346348.7:ENST00000314673.8:ENST00000682633.1:ENST00000683085.1:ENST00000682688.1:ENST00000684319.1:ENST00000683577.1:ENST00000682709.1:ENST00000684299.1:ENST00000682133.1:ENST00000682594.1:ENST00000683473.1:ENST00000682106.1:ENST00000683364.1:ENST00000683436.1:ENST00000684220.1:ENST00000683909.1:ENST00000684118.1:ENST00000681981.1:ENST00000682738.1:ENST00000509338.6:ENST00000684717.1:ENST00000682660.1:ENST00000683073.1:ENST00000515216.6:ENST00000684581.1:ENST00000683763.1:ENST00000683479.1:ENST00000682464.1:ENST00000684108.1:ENST00000682514.1:ENST00000684017.1:ENST00000684273.1:ENST00000513865.5:ENST00000505648.5:ENST00000508980.5:ENST00000369627.6:ENST00000503491.5:ENST00000508658.6:ENST00000683097.1:ENST00000683541.1:ENST00000683759.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	108	2	3.09808	3.26703	3.43598	1.21563e-4	7.05043e-5	0.00992813	0.00694412
chr1	51248370	51248470	98298	0	+	0.52	(0.515,0.57]	chr1	13196	111	INTRON	INTRON	RNF11	ENSG00000123091.5	ENST00000242719.4:ENST00000494873.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	54	2	2.60899	3.2669949999999996	3.925	0.0232669	8.71525e-5	0.118148	0.00783545
chr16	89394619	89394715	6542633	0	-	0.375	(0.35,0.378]	chr16	634244	16	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000647238.1:ENST00000644045.1:ENST00000643147.1:ENST00000644139.1:ENST00000568512.6:ENST00000566973.1:ENST00000562211.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	101	2	2.83102	3.26699	3.70296	6.20319e-4	5.35542e-4	0.0229151	0.0209215
chr7	74194448	74194545	3332433	0	+	0.360825	(0.35,0.378]	chr7	310058	19	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	EIF4H	ENSG00000106682.16	ENST00000678438.1:ENST00000677998.1:ENST00000495187.2:ENST00000265753.13:ENST00000353999.6:ENST00000677570.1:ENST00000677681.1:ENST00000678815.1:ENST00000679266.1:ENST00000679287.1:ENST00000678341.1:ENST00000679161.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	84	2	3.02027	3.2668749999999998	3.51348	0.00136294	8.40802e-4	0.0336321	0.0263691
chr1	163329007	163329107	239604	0	+	0.27	[0,0.28]	chr1	28869	1	SS5_PROX	SS5_PROX:INTRON	NUF2	ENSG00000143228.13	ENST00000534289.5:ENST00000450453.6:ENST00000524800.5:ENST00000367900.7:ENST00000442820.5:ENST00000271452.8:ENST00000490881.5:ENST00000497990.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	44	2	1.84147	3.26669	4.69191	0.0610416	0.0269474	0.193277	0.123442
chr12	112061688	112061788	5414942	0	-	0.23	[0,0.28]	chr12	517188	3	SS3_PROX	SS3_PROX:INTRON	NAA25	ENSG00000111300.10	ENST00000261745.9:ENST00000552527.5:ENST00000549711.5:ENST00000551858.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	44	2	1.84147	3.26669	4.69191	0.0610416	0.0269474	0.193277	0.123442
chr17	20857897	20857997	6742321	0	-	0.25	[0,0.28]	chr17	661963	204	INTRON	INTRON	CCDC144NL	ENSG00000205212.6	ENST00000539484.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	2	44	2	1.84147	3.26669	4.69191	0.0610416	0.0269474	0.193277	0.123442
chr8	17944906	17945005	3707956	0	+	0.252525	[0,0.28]	chr8	343851	44	INTRON	INTRON	PCM1	ENSG00000078674.19	ENST00000518930.1:ENST00000325083.13:ENST00000517730.5:ENST00000518537.5:ENST00000523055.5:ENST00000519253.5:ENST00000524226.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	44	2	1.84147	3.26669	4.69191	0.0610416	0.0269474	0.193277	0.123442
chr2	197868500	197868600	969741	0	+	0.46	(0.44,0.476]	chr2	104858	578	INTRON	INTRON	PLCL1	ENSG00000115896.16	ENST00000428675.6:ENST00000435320.1:ENST00000487695.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	93	2	2.6062	3.26666	3.92712	0.00148054	1.7642e-4	0.0353633	0.01216
chr4	55532418	55532518	2149764	0	-	0.32	(0.28,0.32]	chr4	211545	220	INTRON	INTRON	CLOCK	ENSG00000134852.15	ENST00000513440.6:ENST00000381322.5:ENST00000435527.6:ENST00000506923.5:ENST00000509151.5:ENST00000513033.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	43	2	2.28998	3.26659	4.2432	0.0479043	0.0166401	0.153019	0.110511
chr18	12967575	12967674	6876356	0	+	0.565657	(0.515,0.57]	chr18	681295	27	INTRON	INTRON	SEH1L	ENSG00000085415.16	ENST00000262124.15:ENST00000399892.7:ENST00000585730.5:ENST00000589446.5:ENST00000587761.1:ENST00000588251.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	89	2	3.16037	3.266565	3.37276	4.09074e-4	1.02064e-4	0.0185763	0.00853098
chr1	96790237	96790336	168637	0	+	0.343434	(0.32,0.35]	chr1	18249	46	INTRON	INTRON	PTBP2	ENSG00000117569.19	ENST00000482253.5:ENST00000675735.1:ENST00000609116.5:ENST00000674951.1:ENST00000675080.1:ENST00000426398.3:ENST00000370197.5:ENST00000370198.5:ENST00000476419.5:ENST00000676292.1:ENST00000676096.1:ENST00000675365.1:ENST00000674579.1:ENST00000675401.1:ENST00000459735.5:ENST00000476783.5:ENST00000492905.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	108	2	2.8652	3.2664350000000004	3.66767	8.30614e-4	4.9686e-4	0.0266389	0.0201536
chr13	19708750	19708847	5552197	0	-	0.319588	(0.28,0.32]	chr13	530690	26	INTRON	INTRON	PSPC1	ENSG00000121390.19	ENST00000471658.5:ENST00000492741.5:ENST00000635562.1:ENST00000338910.9:ENST00000619300.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	57	2	1.60333	3.26631	4.92929	0.0413158	0.0098607	0.161534	0.0838128
chr2	38750415	38750508	1099875	0	-	0.698925	(0.57,1]	chr2	118013	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SRSF7	ENSG00000115875.19	ENST00000446327.6:ENST00000313117.11:ENST00000425778.5:ENST00000425941.6:ENST00000409276.5:ENST00000431066.5:ENST00000443213.5:ENST00000415527.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	36	2	2.66801	3.266305	3.8646	0.0169968	8.0672e-5	0.110899	0.00804467
chr8	39054973	39055073	3738880	0	+	0.3	(0.28,0.32]	chr8	347543	4	SS5_PROX	SS5_PROX:INTRON	ADAM9	ENSG00000168615.13	ENST00000678474.1:ENST00000676765.1:ENST00000676936.1:ENST00000677908.1:ENST00000677004.1:ENST00000677165.1:ENST00000481058.2:ENST00000676643.1:ENST00000676669.1:ENST00000679268.1:ENST00000677582.1:ENST00000676617.1:ENST00000677137.1:ENST00000678540.1:ENST00000677359.1:ENST00000678730.1:ENST00000487273.7:ENST00000678253.1:ENST00000676489.1:ENST00000379917.7:ENST00000468065.5:ENST00000481873.7:ENST00000676919.1:ENST00000678863.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	76	2	2.10616	3.26623	4.4263	0.0330296	0.00457639	0.133816	0.0622676
chr7	123733419	123733519	3632505	0	-	0.25	[0,0.28]	chr7	337581	238	INTRON	INTRON	WASL	ENSG00000106299.8	ENST00000223023.5	protein_coding	protein_coding	protein_coding	protein_coding	3	55	2	1.84046	3.266185	4.69191	0.0335889	0.0269474	0.146709	0.123442
chr5	72318708	72318807	2640799	0	-	0.494949	(0.476,0.515]	chr5	251006	42	INTRON	INTRON	MRPS27	ENSG00000113048.18	ENST00000694990.1:ENST00000694989.1:ENST00000694988.1:ENST00000261413.10:ENST00000513900.6:ENST00000695403.1:ENST00000523654.6:ENST00000694998.1:ENST00000694997.1:ENST00000695298.1:ENST00000694999.1:ENST00000457646.9:ENST00000695404.1:ENST00000508863.6:ENST00000515404.5:ENST00000522404.5:ENST00000695000.1:ENST00000520285.5:ENST00000522095.1:ENST00000506957.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	29	2	2.56033	3.26617	3.97201	0.030904	0.0287634	0.143385	0.127066
chr6	104999831	104999931	2930279	0	+	0.49	(0.476,0.515]	chr6	276110	412	INTRON	INTRON	LIN28B	ENSG00000187772.8	ENST00000635857.1:ENST00000637759.1:ENST00000345080.5	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	2.56033	3.26617	3.97201	0.030904	0.0287634	0.143385	0.127066
chr3	195963821	195963921	1896694	0	-	0.41	(0.408,0.44]	chr3	189799	4	SS3_PROX	SS3_PROX:INTRON	SDHAP1	ENSG00000185485.14	ENST00000427149.5:ENST00000427841.5:ENST00000354559.9:ENST00000440850.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	2	35	2	1.93243	3.26611	4.59979	0.0441194	0.0109537	0.162255	0.0873034
chr7	137994260	137994360	3655663	0	-	0.44	(0.408,0.44]	chr7	339370	605	INTRON	INTRON	CREB3L2	ENSG00000182158.16	ENST00000330387.11:ENST00000456390.5:ENST00000452463.5	protein_coding	protein_coding	protein_coding	protein_coding	2	35	2	1.93243	3.26611	4.59979	0.0441194	0.0109537	0.162255	0.0873034
chr1	21631489	21631589	395390	0	-	0.49	(0.476,0.515]	chr1	47153	47	INTRON	INTRON	RAP1GAP	ENSG00000076864.21	ENST00000374765.9:ENST00000471600.6:ENST00000542643.6:ENST00000611549.4:ENST00000495204.5:ENST00000374757.7:ENST00000317967.11:ENST00000447293.5:ENST00000482984.5:ENST00000464457.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	35	2	1.91817	3.266095	4.61402	0.0459211	0.00947755	0.164984	0.0817766
chr22	21934805	21934901	7561550	0	-	0.479167	(0.476,0.515]	chr22	773427	7	EXON_MRNA	EXON_MRNA:INTRON	PPM1F	ENSG00000100034.14	ENST00000263212.10:ENST00000407142.5:ENST00000397495.8:ENST00000445205.1:ENST00000623652.1:ENST00000424647.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	35	2	1.91817	3.266095	4.61402	0.0459211	0.00947755	0.164984	0.0817766
chr3	33069170	33069270	1650883	0	-	0.48	(0.476,0.515]	chr3	169287	2	SS3_PROX	SS3_PROX:INTRON	GLB1	ENSG00000170266.16	ENST00000399402.7:ENST00000307363.10:ENST00000307377.12:ENST00000482097.5:ENST00000485698.5:ENST00000498537.5:ENST00000415454.1:ENST00000446732.5:ENST00000438227.1:ENST00000440656.1:ENST00000464355.1:ENST00000450835.1:ENST00000436768.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	35	2	1.91817	3.266095	4.61402	0.0459211	0.00947755	0.164984	0.0817766
chr5	138758352	138758451	2497352	0	+	0.515152	(0.476,0.515]	chr5	238698	28	INTRON	INTRON	CTNNA1	ENSG00000044115.21	ENST00000517980.5:ENST00000522227.5:ENST00000524127.5:ENST00000523912.5:ENST00000627109.2:ENST00000520339.5:ENST00000521724.5:ENST00000302763.12:ENST00000518910.5:ENST00000521941.1:ENST00000519309.5:ENST00000519113.5:ENST00000520158.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	35	2	1.91817	3.266095	4.61402	0.0459211	0.00947755	0.164984	0.0817766
chr7	107102772	107102872	3377749	0	+	0.5	(0.476,0.515]	chr7	316252	105	INTRON	INTRON	PRKAR2B	ENSG00000005249.13	ENST00000265717.5:ENST00000393613.6:ENST00000488792.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	35	2	1.91817	3.266095	4.61402	0.0459211	0.00947755	0.164984	0.0817766
chr2	74215610	74215708	813416	0	+	0.520408	(0.515,0.57]	chr2	90977	15	UTR3	UTR3:EXON_MRNA	MTHFD2	ENSG00000065911.13	ENST00000394053.7:ENST00000677377.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	33	2	2.32836	3.266085	4.20381	0.0189208	0.0126662	0.108861	0.0982897
chr7	129629277	129629377	3412297	0	+	0.52	(0.515,0.57]	chr7	319009	171	INTRON	INTRON	NRF1	ENSG00000106459.15	ENST00000393232.6:ENST00000477428.5:ENST00000454688.5:ENST00000223190.8:ENST00000311967.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	33	2	2.32836	3.266085	4.20381	0.0189208	0.0126662	0.108861	0.0982897
chr7	127919381	127919480	3405091	0	+	0.292929	(0.28,0.32]	chr7	318161	142	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000465900.5:ENST00000486037.1:ENST00000484767.5:ENST00000492840.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	59	2	1.79739	3.266065	4.73474	0.0224995	0.0162835	0.124921	0.101453
chr1	244682199	244682299	348002	0	+	0.49	(0.476,0.515]	chr1	40357	258	INTRON	INTRON	DESI2	ENSG00000121644.19	ENST00000263831.11:ENST00000302550.16:ENST00000418162.1	protein_coding	protein_coding	protein_coding	protein_coding	2	35	2	1.8388	3.266	4.6932	0.0564473	0.00753088	0.184423	0.074841
chr12	118411657	118411755	5234763	0	+	0.489796	(0.476,0.515]	chr12	496666	1	INTRON	INTRON	SUDS3	ENSG00000111707.12	ENST00000543473.2:ENST00000541591.5:ENST00000541280.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	35	2	1.8388	3.266	4.6932	0.0564473	0.00753088	0.184423	0.074841
chrX	111710695	111710791	7702316	0	+	0.5	(0.476,0.515]	chrX	788233	13	INTRON	INTRON	ALG13	ENSG00000101901.12	ENST00000487141.5:ENST00000394780.8:ENST00000251943.8:ENST00000610588.4:ENST00000621367.4:ENST00000622997.3:ENST00000624161.3:ENST00000636363.1:ENST00000624881.3:ENST00000495283.5:ENST00000623144.3:ENST00000470971.5:ENST00000623148.3:ENST00000436609.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	35	2	1.8388	3.266	4.6932	0.0564473	0.00753088	0.184423	0.074841
chr1	213010513	213010610	635043	0	-	0.43299	(0.408,0.44]	chr1	75028	17	INTRON	INTRON	ANGEL2	ENSG00000174606.14	ENST00000366962.8:ENST00000360506.6:ENST00000535388.2:ENST00000476904.5:ENST00000460337.5:ENST00000481918.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	35	2	1.85305	3.265995	4.67894	0.0543543	0.0087648	0.182243	0.0788605
chr11	93812422	93812520	4849042	0	+	0.428571	(0.408,0.44]	chr11	452342	3	UTR3	UTR3:EXON_MRNA	MED17	ENSG00000042429.12	ENST00000638487.1:ENST00000251871.9:ENST00000639189.1:ENST00000525613.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	35	2	1.85305	3.265995	4.67894	0.0543543	0.0087648	0.182243	0.0788605
chr16	16125415	16125513	6309547	0	+	0.428571	(0.408,0.44]	chr16	603676	1	SS3_PROX	SS3_PROX:INTRON	ABCC1	ENSG00000103222.20	ENST00000678422.1:ENST00000677164.1:ENST00000399408.7:ENST00000572882.3:ENST00000399410.8:ENST00000676806.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	35	2	1.85305	3.265995	4.67894	0.0543543	0.0087648	0.182243	0.0788605
chr16	29552885	29552985	6471122	0	-	0.42	(0.408,0.44]	chr16	625248	4	SS5_PROX	SS5_PROX:INTRON	ENSG00000288632:SMG1P2	ENSG00000288632.1:ENSG00000205534.6	ENST00000675579.1:ENST00000566127.1	lncRNA	lncRNA	lncRNA:transcribed_unprocessed_pseudogene	lncRNA:transcribed_unprocessed_pseudogene	2	35	2	1.85305	3.265995	4.67894	0.0543543	0.0087648	0.182243	0.0788605
chr16	74967820	74967920	6527122	0	-	0.41	(0.408,0.44]	chr16	632160	16	INTRON	INTRON	WDR59	ENSG00000103091.15	ENST00000262144.11:ENST00000616369.4:ENST00000536050.5:ENST00000568323.5:ENST00000563111.2:ENST00000562331.5:ENST00000564859.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	35	2	1.85305	3.265995	4.67894	0.0543543	0.0087648	0.182243	0.0788605
chr6	43637055	43637146	2872016	0	+	0.417582	(0.408,0.44]	chr6	272332	3	SS5_PROX	SS5_PROX:INTRON	MAD2L1BP	ENSG00000124688.14	ENST00000451025.6:ENST00000372171.5	protein_coding	protein_coding	protein_coding	protein_coding	2	35	2	1.85305	3.265995	4.67894	0.0543543	0.0087648	0.182243	0.0788605
chr7	152386357	152386457	3680797	0	-	0.44	(0.408,0.44]	chr7	341660	273	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000682301.1:ENST00000452749.2:ENST00000680867.1:ENST00000683800.1:ENST00000684278.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	35	2	1.85305	3.265995	4.67894	0.0543543	0.0087648	0.182243	0.0788605
chr6	87551599	87551697	3152246	0	-	0.336735	(0.32,0.35]	chr6	294043	17	INTRON	INTRON	RARS2	ENSG00000146282.19	ENST00000691533.1:ENST00000493269.2:ENST00000685069.1:ENST00000691725.1:ENST00000369536.10:ENST00000693431.1:ENST00000685408.1:ENST00000693327.1:ENST00000691205.1:ENST00000689174.1:ENST00000692684.1:ENST00000686988.1:ENST00000690622.1:ENST00000689206.1:ENST00000688532.1:ENST00000686154.1:ENST00000686407.1:ENST00000685701.1:ENST00000689561.1:ENST00000691238.1:ENST00000685336.1:ENST00000686284.1:ENST00000687586.1:ENST00000685376.1:ENST00000685881.1:ENST00000691815.1:ENST00000687090.1:ENST00000451155.2:ENST00000687437.1:ENST00000692394.1:ENST00000687729.1:ENST00000693605.1:ENST00000687909.1:ENST00000688391.1:ENST00000690884.1:ENST00000692843.1:ENST00000684790.1:ENST00000692270.1:ENST00000685219.1:ENST00000689952.1:ENST00000687579.1:ENST00000686857.1:ENST00000690205.1:ENST00000690705.1:ENST00000686142.1:ENST00000688106.1:ENST00000686196.1:ENST00000687078.1:ENST00000690555.1:ENST00000693524.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	161	2	2.19426	3.26592	4.33758	0.00126656	3.80568e-5	0.0330145	0.00525714
chr1	167741105	167741204	247956	0	+	0.454545	(0.44,0.476]	chr1	29490	185	INTRON	INTRON	MPZL1	ENSG00000197965.12	ENST00000464954.1:ENST00000359523.7:ENST00000448405.5:ENST00000392121.7:ENST00000465787.5:ENST00000474859.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	26	2	2.29425	3.2659	4.23755	0.0518406	0.0263357	0.176696	0.122221
chr11	3791616	3791715	4895116	0	-	0.464646	(0.44,0.476]	chr11	458931	91	INTRON	INTRON	NUP98	ENSG00000110713.17	ENST00000359171.8:ENST00000324932.12:ENST00000650171.1:ENST00000355260.7:ENST00000397004.8:ENST00000397007.8:ENST00000532475.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	26	2	2.29425	3.2659	4.23755	0.0518406	0.0263357	0.176696	0.122221
chr11	65300980	65301079	4805132	0	+	0.444444	(0.44,0.476]	chr11	446429	24	INTRON	INTRON	POLA2	ENSG00000014138.9	ENST00000525924.1	protein_coding	protein_coding	protein_coding	protein_coding	1	26	2	2.29425	3.2659	4.23755	0.0518406	0.0263357	0.176696	0.122221
chr15	40189152	40189252	6001534	0	+	0.46	(0.44,0.476]	chr15	570623	17	INTRON	INTRON	BUB1B	ENSG00000156970.13	ENST00000412359.7:ENST00000287598.11:ENST00000559733.5:ENST00000557848.1:ENST00000559772.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	26	2	2.29425	3.2659	4.23755	0.0518406	0.0263357	0.176696	0.122221
chr17	47043485	47043585	6788068	0	-	0.45	(0.44,0.476]	chr17	669477	80	INTRON	INTRON	ENSG00000262879	ENSG00000262879.6	ENST00000668245.1:ENST00000670688.1:ENST00000655083.1:ENST00000656035.1:ENST00000663416.1:ENST00000575930.5:ENST00000663847.1:ENST00000571901.5:ENST00000660267.1:ENST00000570314.2:ENST00000660600.1:ENST00000669500.1:ENST00000660448.1:ENST00000662706.1:ENST00000655133.1:ENST00000571143.2:ENST00000663210.1:ENST00000653193.1:ENST00000668766.1:ENST00000661492.1:ENST00000575173.2:ENST00000666536.1:ENST00000653065.1:ENST00000668604.1	lncRNA	lncRNA	lncRNA	lncRNA	1	26	2	2.29425	3.2659	4.23755	0.0518406	0.0263357	0.176696	0.122221
chr17	59930799	59930883	6644154	0	+	0.47619	(0.44,0.476]	chr17	648846	1	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	RPS6KB1	ENSG00000108443.14	ENST00000393021.7:ENST00000472940.5:ENST00000225577.9:ENST00000443572.6:ENST00000489824.1:ENST00000406116.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	26	2	2.29425	3.2659	4.23755	0.0518406	0.0263357	0.176696	0.122221
chr18	2940104	2940204	6944360	0	-	0.47	(0.44,0.476]	chr18	686799	1	SS5_PROX	SS5_PROX:INTRON	LPIN2	ENSG00000101577.10	ENST00000261596.8:ENST00000677752.1	protein_coding	protein_coding	protein_coding	protein_coding	1	26	2	2.29425	3.2659	4.23755	0.0518406	0.0263357	0.176696	0.122221
chr19	5715140	5715240	7124666	0	-	0.45	(0.44,0.476]	chr19	717171	1	SS3_PROX	SS3_PROX:INTRON	LONP1	ENSG00000196365.12	ENST00000360614.8:ENST00000587552.5:ENST00000540670.6:ENST00000593119.5:ENST00000585374.5:ENST00000590558.5:ENST00000590729.5:ENST00000587365.1:ENST00000586617.1:ENST00000590728.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	26	2	2.29425	3.2659	4.23755	0.0518406	0.0263357	0.176696	0.122221
chr20	3193277	3193372	7306580	0	-	0.452632	(0.44,0.476]	chr20	743976	11	INTRON	INTRON	DDRGK1	ENSG00000198171.13	ENST00000354488.8:ENST00000470203.1:ENST00000380201.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	26	2	2.29425	3.2659	4.23755	0.0518406	0.0263357	0.176696	0.122221
chr5	177220680	177220779	2554574	0	+	0.454545	(0.44,0.476]	chr5	243958	81	INTRON	INTRON	NSD1	ENSG00000165671.22	ENST00000689549.1:ENST00000354179.9:ENST00000686993.1:ENST00000689326.1:ENST00000439151.7:ENST00000510954.6:ENST00000689345.1:ENST00000347982.9:ENST00000687453.1:ENST00000685206.1:ENST00000688613.1:ENST00000375350.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	26	2	2.29425	3.2659	4.23755	0.0518406	0.0263357	0.176696	0.122221
chr7	116966401	116966501	3386115	0	+	0.47	(0.44,0.476]	chr7	317128	67	INTRON	INTRON	ST7:ST7-OT4	ENSG00000004866.22:ENSG00000214188.9	ENST00000393446.6:ENST00000265437.9:ENST00000393451.7:ENST00000438863.5:ENST00000393449.5:ENST00000443979.5:ENST00000323984.8:ENST00000417919.5:ENST00000446490.5:ENST00000466018.5:ENST00000471110.5:ENST00000470996.4:ENST00000397751.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:nonsense_mediated_decay:lncRNA	1	26	2	2.29425	3.2659	4.23755	0.0518406	0.0263357	0.176696	0.122221
chr7	128316387	128316483	3634970	0	-	0.458333	(0.44,0.476]	chr7	337835	10	INTRON	INTRON	RBM28	ENSG00000106344.8	ENST00000223073.6:ENST00000481788.1:ENST00000415472.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	26	2	2.29425	3.2659	4.23755	0.0518406	0.0263357	0.176696	0.122221
chr7	135687803	135687903	3429535	0	+	0.47	(0.44,0.476]	chr7	319877	115	INTRON	INTRON	STMP1	ENSG00000243317.8	ENST00000509448.5:ENST00000422968.2	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	1	26	2	2.29425	3.2659	4.23755	0.0518406	0.0263357	0.176696	0.122221
chr1	89928207	89928307	160598	0	+	0.54	(0.515,0.57]	chr1	17285	812	INTRON	INTRON	LRRC8D	ENSG00000171492.14	ENST00000525774.5:ENST00000337338.9:ENST00000394593.7:ENST00000532201.5:ENST00000414841.1:ENST00000527156.1:ENST00000441269.2	protein_coding	protein_coding	protein_coding	protein_coding	6	104	2	2.72099	3.265895	3.8108	2.17298e-4	1.19799e-4	0.0135077	0.00937657
chrX	53668385	53668484	7821726	0	-	0.434343	(0.408,0.44]	chrX	798234	139	INTRON	INTRON	HUWE1	ENSG00000086758.16	ENST00000262854.11:ENST00000342160.7:ENST00000218328.12:ENST00000446750.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	54	2	1.45162	3.265725	5.07983	0.0451203	0.00247652	0.163518	0.0446195
chr19	11126319	11126418	7017207	0	+	0.323232	(0.32,0.35]	chr19	697502	26	INTRON	INTRON	LDLR	ENSG00000130164.14	ENST00000557933.5:ENST00000558518.6:ENST00000545707.5:ENST00000535915.5:ENST00000455727.6:ENST00000558013.5:ENST00000252444.9	protein_coding	protein_coding	protein_coding	protein_coding	6	137	2	2.36431	3.26572	4.16713	0.00127288	8.85881e-5	0.0331457	0.00842626
chr1	233623751	233623851	338630	0	+	0.49	(0.476,0.515]	chr1	39407	2	PRIMIRNA	PRIMIRNA:INTRON	KCNK1:MIR4427	ENSG00000135750.15:ENSG00000265744.1	ENST00000366621.8:ENST00000585213.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:primary_miRNA	2	59	2	3.07422	3.2656650000000003	3.45711	0.00506023	0.00140905	0.0646039	0.0340865
chr12	68816511	68816611	5163057	0	+	0.5	(0.476,0.515]	chr12	488894	3	SS3_PROX	SS3_PROX:INTRON	MDM2	ENSG00000135679.27	ENST00000258149.11:ENST00000393412.7:ENST00000311420.13:ENST00000493419.1:ENST00000393417.8:ENST00000258148.11:ENST00000539479.6:ENST00000523991.5:ENST00000543323.5:ENST00000393415.7:ENST00000393416.7:ENST00000481186.6:ENST00000545204.2:ENST00000544561.6:ENST00000665020.1:ENST00000666617.1:ENST00000671567.1:ENST00000393410.5:ENST00000496959.5:ENST00000299252.8:ENST00000360430.6:ENST00000517852.5:ENST00000546048.5:ENST00000540352.5:ENST00000542502.5:ENST00000537182.5:ENST00000536089.5:ENST00000393413.7:ENST00000350057.9:ENST00000348801.7:ENST00000478070.2:ENST00000471946.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	59	2	3.07422	3.2656650000000003	3.45711	0.00506023	0.00140905	0.0646039	0.0340865
chr21	6663151	6663250	7425805	0	-	0.323232	(0.32,0.35]	chr21	757499	32	INTRON	INTRON	ENSG00000280145	ENSG00000280145.3	ENST00000625185.3:ENST00000624846.3:ENST00000623313.1:ENST00000624965.1	lncRNA	lncRNA	lncRNA	lncRNA	4	121	2	3.04809	3.2655700000000003	3.48305	0.00120984	8.91094e-5	0.0317954	0.00793468
chr1	203804914	203805014	296773	0	+	0.45	(0.44,0.476]	chr1	34134	15	INTRON	INTRON	ZC3H11A:ZBED6	ENSG00000058673.17:ENSG00000257315.3	ENST00000367210.3:ENST00000453771.5:ENST00000432282.5:ENST00000638800.1:ENST00000367214.5:ENST00000639812.1:ENST00000367212.7:ENST00000332127.8:ENST00000550078.2:ENST00000495527.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	78	2	3.22098	3.265545	3.31011	0.00259023	2.82213e-4	0.0452934	0.0149966
chr12	120854234	120854334	5435406	0	-	0.39	(0.378,0.408]	chr12	519663	187	INTRON	INTRON	SPPL3	ENSG00000157837.16	ENST00000353487.7:ENST00000536996.5:ENST00000543608.5:ENST00000543854.5	protein_coding	protein_coding	protein_coding	protein_coding	2	61	2	3.17089	3.265435	3.35998	0.00357279	0.00230615	0.0548435	0.0428247
chr11	83077173	83077272	4840479	0	+	0.464646	(0.44,0.476]	chr11	451468	1	INTRON	INTRON	RAB30-DT	ENSG00000246067.9	ENST00000658004.1:ENST00000527627.5:ENST00000533528.1:ENST00000658917.1	lncRNA	lncRNA	lncRNA	lncRNA	6	143	2	2.78545	3.26517	3.74489	3.37024e-4	1.37916e-5	0.0170609	0.00276767
chr16	70271104	70271192	6510306	0	-	0.488636	(0.476,0.515]	chr16	630579	4	INTRON	INTRON	AARS1	ENSG00000090861.17	ENST00000674963.1:ENST00000675643.1:ENST00000675917.1:ENST00000674691.1:ENST00000261772.13:ENST00000675569.1:ENST00000676209.1:ENST00000676211.1:ENST00000676040.1:ENST00000675953.1:ENST00000675691.1:ENST00000676004.1:ENST00000675270.1:ENST00000675403.1:ENST00000676212.1:ENST00000675045.1:ENST00000675035.1:ENST00000676168.1:ENST00000674652.1:ENST00000675133.1:ENST00000675120.1:ENST00000674811.1:ENST00000674512.1:ENST00000675853.1:ENST00000565361.3:ENST00000676247.1:ENST00000674848.1:ENST00000674962.1:ENST00000675371.1:ENST00000675986.1:ENST00000674768.1:ENST00000675297.1:ENST00000675751.1:ENST00000564359.6:ENST00000675338.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	78	2	3.23946	3.2651	3.29074	0.00272563	2.59571e-4	0.0467523	0.014326
chr17	82560475	82560574	6693014	0	+	0.50505	(0.476,0.515]	chr17	654633	6	INTRON	INTRON	FOXK2	ENSG00000141568.21	ENST00000473637.6:ENST00000335255.10:ENST00000527313.6:ENST00000570585.1:ENST00000531030.5:ENST00000526383.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	78	2	3.23946	3.2651	3.29074	0.00272563	2.59571e-4	0.0467523	0.014326
chr12	68819997	68820097	5163096	0	+	0.4	(0.378,0.408]	chr12	488905	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MDM2	ENSG00000135679.27	ENST00000258149.11:ENST00000393412.7:ENST00000311420.13:ENST00000393417.8:ENST00000258148.11:ENST00000539479.6:ENST00000523991.5:ENST00000543323.5:ENST00000393415.7:ENST00000393416.7:ENST00000481186.6:ENST00000545204.2:ENST00000544561.6:ENST00000665020.1:ENST00000666617.1:ENST00000671567.1:ENST00000393410.5:ENST00000496959.5:ENST00000299252.8:ENST00000360430.6:ENST00000517852.5:ENST00000546048.5:ENST00000540352.5:ENST00000542502.5:ENST00000537182.5:ENST00000536089.5:ENST00000393413.7:ENST00000350057.9:ENST00000348801.7:ENST00000478070.2:ENST00000471946.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	43	2	1.72045	3.265065	4.80968	0.0424671	0.00679828	0.161763	0.0711802
chr22	26582374	26582473	7564991	0	-	0.414141	(0.408,0.44]	chr22	774054	168	INTRON	INTRON	TPST2	ENSG00000128294.16	ENST00000338754.9:ENST00000403880.5:ENST00000442495.5:ENST00000440953.5:ENST00000450022.1	protein_coding	protein_coding	protein_coding	protein_coding	5	126	2	2.97091	3.265005	3.5591	3.4851e-4	4.27819e-5	0.017404	0.00529798
chr8	37898170	37898270	3935932	0	-	0.6	(0.57,1]	chr8	360576	202	INTRON	INTRON	RAB11FIP1	ENSG00000156675.16	ENST00000330843.9:ENST00000287263.8:ENST00000522727.5	protein_coding	protein_coding	protein_coding	protein_coding	6	75	2	2.81597	3.264965	3.71396	1.20267e-4	7.10427e-6	0.00992311	0.00188881
chr19	28443889	28443989	7165526	0	-	0.54	(0.515,0.57]	chr19	724159	58	INTRON	INTRON	ENSG00000283403:ENSG00000267243	ENSG00000283403.1:ENSG00000267243.6	ENST00000592347.5:ENST00000593065.5:ENST00000592716.1	lncRNA	lncRNA	lncRNA	lncRNA	2	38	2	2.48902	3.26494	4.04086	0.0197045	0.00760558	0.120063	0.0749571
chr1	205614171	205614270	623321	0	-	0.393939	(0.378,0.408]	chr1	74129	64	UTR3	UTR3:EXON_MRNA:INTRON	ELK4	ENSG00000158711.14	ENST00000616704.4:ENST00000357992.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	44	2	1.94559	3.26493	4.58427	0.0211434	0.0128325	0.122929	0.0926667
chr9	72181638	72181737	4141588	0	+	0.494949	(0.476,0.515]	chr9	377412	316	INTRON	INTRON	GDA	ENSG00000119125.17	ENST00000545168.5:ENST00000238018.8:ENST00000358399.8:ENST00000376986.5:ENST00000475764.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	30	2	2.69967	3.264925	3.83018	0.0423385	0.0195838	0.161744	0.109483
chrX	136970536	136970635	7728083	0	+	0.363636	(0.35,0.378]	chrX	790798	67	INTRON	INTRON	TM9SF5P	ENSG00000234062.9	ENST00000650669.2:ENST00000687469.1:ENST00000431464.6:ENST00000685550.1:ENST00000685929.1:ENST00000424306.5:ENST00000687978.1:ENST00000688713.1:ENST00000693626.1:ENST00000686432.1:ENST00000693698.1:ENST00000426943.4	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	3	50	2	1.70607	3.26492	4.82377	0.0482819	0.00325499	0.153283	0.0524329
chr15	85015426	85015526	6089266	0	+	0.42	(0.408,0.44]	chr15	579504	327	INTRON	INTRON	PDE8A	ENSG00000073417.15	ENST00000310298.8:ENST00000557957.5:ENST00000394553.6:ENST00000339708.9:ENST00000478717.5:ENST00000485596.5:ENST00000559742.5:ENST00000559086.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	43	2	1.93002	3.2649049999999997	4.59979	0.022095	0.0109537	0.123903	0.0873034
chr16	8845544	8845643	6285144	0	+	0.424242	(0.408,0.44]	chr16	601859	28	INTRON	INTRON	PMM2	ENSG00000140650.13	ENST00000566983.5:ENST00000683435.1:ENST00000683094.1:ENST00000566604.5:ENST00000268261.9:ENST00000683274.1:ENST00000682393.1:ENST00000566540.5:ENST00000562318.5:ENST00000570076.5:ENST00000569958.5:ENST00000565221.5:ENST00000567697.2:ENST00000562025.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	43	2	1.93002	3.2649049999999997	4.59979	0.022095	0.0109537	0.123903	0.0873034
chr2	39272003	39272096	1102611	0	-	0.236559	[0,0.28]	chr2	118357	2	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	MAP4K3	ENSG00000011566.15	ENST00000263881.8:ENST00000437545.5:ENST00000341681.9:ENST00000495648.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	83	2	2.86008	3.264895	3.66971	0.0177015	7.51669e-4	0.105304	0.0251578
chr16	67802032	67802132	6505638	0	-	0.44	(0.408,0.44]	chr16	629654	296	INTRON	INTRON	RANBP10	ENSG00000141084.12	ENST00000317506.8:ENST00000448631.6:ENST00000602506.5:ENST00000602677.5:ENST00000602525.5:ENST00000602638.5:ENST00000602815.5:ENST00000602887.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	49	2	1.70409	3.264695	4.8253	0.028108	0.0056738	0.137011	0.0653997
chr15	72520832	72520932	6059627	0	+	0.43	(0.408,0.44]	chr15	576864	23	INTRON	INTRON	ARIH1	ENSG00000166233.15	ENST00000379887.9:ENST00000570085.5:ENST00000564062.1:ENST00000567762.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	78	2	2.86612	3.2646100000000002	3.6631	0.00157924	6.21419e-4	0.0366789	0.0229151
chr1	227014109	227014207	648633	0	-	0.326531	(0.32,0.35]	chr1	76900	27	INTRON	INTRON	CDC42BPA	ENSG00000143776.20	ENST00000366766.8:ENST00000366769.7:ENST00000334218.9:ENST00000366767.7:ENST00000448940.5:ENST00000442054.5:ENST00000366764.8:ENST00000429440.5	protein_coding	protein_coding	protein_coding	protein_coding	5	148	2	3.06922	3.26454	3.45986	3.08481e-4	1.01088e-4	0.0161584	0.00849135
chr4	126512626	126512726	2235835	0	-	0.2	[0,0.28]	chr4	219023	471	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	2	82	2	3.1177	3.2644200000000003	3.41114	0.00849154	0.00211753	0.0778788	0.0425644
chr14	39276957	39277057	5700652	0	+	0.36	(0.35,0.378]	chr14	541974	1	CDS_START	CDS_START:CDS:UTR5:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	MIA2	ENSG00000150527.18	ENST00000553728.1:ENST00000640607.2:ENST00000554392.5:ENST00000555716.5:ENST00000341749.7:ENST00000557038.5:ENST00000396165.8:ENST00000556990.1:ENST00000396158.6:ENST00000280083.7:ENST00000341502.9:ENST00000556148.5:ENST00000348007.7:ENST00000553352.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	38	2	2.23043	3.2644100000000003	4.29839	0.0294717	0.0187487	0.128055	0.117523
chr8	30710981	30711078	3932578	0	-	0.360825	(0.35,0.378]	chr8	360263	7	INTRON	INTRON	GSR	ENSG00000104687.14	ENST00000221130.11:ENST00000643653.1:ENST00000643525.1:ENST00000537535.5:ENST00000541648.5:ENST00000546342.5:ENST00000523295.5:ENST00000521479.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	38	2	2.23043	3.2644100000000003	4.29839	0.0294717	0.0187487	0.128055	0.117523
chr19	32587009	32587090	7049667	0	+	0.444444	(0.44,0.476]	chr19	702952	2	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PDCD5	ENSG00000105185.12	ENST00000590247.7:ENST00000419343.7:ENST00000221784.8:ENST00000592786.5:ENST00000379316.3:ENST00000586035.1:ENST00000586316.5:ENST00000588622.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	35	2	2.00609	3.2643950000000004	4.5227	0.0360127	0.0128818	0.152355	0.0926667
chr6	27147988	27148088	2838374	0	+	0.56	(0.515,0.57]	chr6	266321	4	PRIMIRNA	PRIMIRNA	MIR3143	ENSG00000265565.1	ENST00000584253.1	miRNA	primary_miRNA	miRNA	primary_miRNA	6	140	2	2.7614899999999998	3.264395	3.7673	6.09302e-4	1.75977e-6	0.0223951	8.88733e-4
chr1	93217041	93217139	163549	0	+	0.55102	(0.515,0.57]	chr1	17728	3	SS5_PROX	SS5_PROX:INTRON	CCDC18	ENSG00000122483.18	ENST00000343253.11:ENST00000401026.7:ENST00000690592.1:ENST00000370276.6:ENST00000690025.1:ENST00000692873.1:ENST00000455267.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	25	2	2.12971	3.264355	4.399	0.0757903	0.00708863	0.194427	0.0754923
chr1	197592018	197592117	615097	0	-	0.525253	(0.515,0.57]	chr1	72815	84	INTRON	INTRON	DENND1B	ENSG00000213047.13	ENST00000620048.6:ENST00000294737.11:ENST00000367396.7:ENST00000235453.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	25	2	2.12971	3.264355	4.399	0.0757903	0.00708863	0.194427	0.0754923
chr10	100156933	100157032	4677890	0	-	0.535354	(0.515,0.57]	chr10	431486	3	INTRON	INTRON	ERLIN1	ENSG00000107566.14	ENST00000421367.7:ENST00000407654.7:ENST00000370408.2	protein_coding	protein_coding	protein_coding	protein_coding	1	25	2	2.12971	3.264355	4.399	0.0757903	0.00708863	0.194427	0.0754923
chr11	76982222	76982322	4837998	0	+	0.52	(0.515,0.57]	chr11	451235	3	SS5_PROX	SS5_PROX:INTRON	ACER3	ENSG00000078124.13	ENST00000679754.1:ENST00000534206.5:ENST00000679866.1:ENST00000680842.1:ENST00000681257.1:ENST00000681354.1:ENST00000681732.1:ENST00000680583.1:ENST00000532485.6:ENST00000681375.1:ENST00000681004.1:ENST00000525194.5:ENST00000525861.5:ENST00000530182.6:ENST00000531461.5:ENST00000681955.1:ENST00000681411.1:ENST00000679924.1:ENST00000526597.5:ENST00000681251.1:ENST00000530334.6:ENST00000533873.1:ENST00000531352.5:ENST00000278544.9:ENST00000680351.1:ENST00000681591.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	25	2	2.12971	3.264355	4.399	0.0757903	0.00708863	0.194427	0.0754923
chr15	28672446	28672537	5988777	0	+	0.538462	(0.515,0.57]	chr15	569396	2	INTRON	INTRON	HERC2P9	ENSG00000206149.11	ENST00000529624.5:ENST00000530420.5:ENST00000528584.5:ENST00000569226.1	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript:transcribed_unprocessed_pseudogene	1	25	2	2.12971	3.264355	4.399	0.0757903	0.00708863	0.194427	0.0754923
chr19	42403623	42403721	7072985	0	+	0.540816	(0.515,0.57]	chr19	707222	16	INTRON	INTRON	LIPE-AS1	ENSG00000213904.10	ENST00000593491.3:ENST00000689053.1:ENST00000685146.1:ENST00000597203.1:ENST00000594624.6:ENST00000685574.1:ENST00000599276.1	lncRNA	lncRNA	lncRNA	lncRNA	1	25	2	2.12971	3.264355	4.399	0.0757903	0.00708863	0.194427	0.0754923
chr22	50366824	50366924	7544424	0	+	0.52	(0.515,0.57]	chr22	771015	229	INTRON	INTRON	PPP6R2	ENSG00000100239.16	ENST00000359139.7:ENST00000395741.7:ENST00000612753.5:ENST00000395744.7	protein_coding	protein_coding	protein_coding	protein_coding	1	25	2	2.12971	3.264355	4.399	0.0757903	0.00708863	0.194427	0.0754923
chr3	183730545	183730644	1580622	0	+	0.545455	(0.515,0.57]	chr3	163056	13	INTRON	INTRON	YEATS2	ENSG00000163872.16	ENST00000305135.10	protein_coding	protein_coding	protein_coding	protein_coding	1	25	2	2.12971	3.264355	4.399	0.0757903	0.00708863	0.194427	0.0754923
chr6	36900926	36901025	2854956	0	+	0.525253	(0.515,0.57]	chr6	269879	9	INTRON	INTRON	C6orf89	ENSG00000198663.17	ENST00000359359.6:ENST00000355190.7:ENST00000373685.1:ENST00000480824.7	protein_coding	protein_coding	protein_coding	protein_coding	1	25	2	2.12971	3.264355	4.399	0.0757903	0.00708863	0.194427	0.0754923
chr1	25834103	25834202	403994	0	-	0.313131	(0.28,0.32]	chr1	48503	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	AUNIP	ENSG00000127423.11	ENST00000538789.5:ENST00000374298.4:ENST00000481602.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	33	2	2.18975	3.26419	4.33863	0.0776042	0.0207276	0.196285	0.122348
chr10	42542357	42542457	4603751	0	-	0.32	(0.28,0.32]	chr10	424114	163	INTRON	INTRON	ZNF37BP	ENSG00000234420.8	ENST00000452075.7:ENST00000692055.1:ENST00000689225.1:ENST00000686311.1:ENST00000686673.1:ENST00000688789.1:ENST00000690905.1:ENST00000435805.7:ENST00000687308.1:ENST00000692559.1:ENST00000690442.1:ENST00000473592.1:ENST00000691808.1:ENST00000692594.1:ENST00000691366.1:ENST00000689409.1:ENST00000685241.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	1	33	2	2.18975	3.26419	4.33863	0.0776042	0.0207276	0.196285	0.122348
chr11	57422251	57422345	4953402	0	-	0.319149	(0.28,0.32]	chr11	464943	5	INTRON	INTRON	ENSG00000254979:SLC43A3	ENSG00000254979.5:ENSG00000134802.18	ENST00000534081.5:ENST00000395124.6:ENST00000395123.6:ENST00000352187.5:ENST00000529554.5:ENST00000533524.5:ENST00000530005.5:ENST00000528098.5:ENST00000529113.5:ENST00000525474.5:ENST00000529112.5:ENST00000526125.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	33	2	2.18975	3.26419	4.33863	0.0776042	0.0207276	0.196285	0.122348
chr17	46095999	46096099	6783894	0	-	0.31	(0.28,0.32]	chr17	669208	9	INTRON	INTRON	KANSL1	ENSG00000120071.15	ENST00000574590.6:ENST00000572904.6:ENST00000432791.7:ENST00000575318.6:ENST00000638275.1:ENST00000262419.10:ENST00000648792.1:ENST00000639531.1:ENST00000639150.1:ENST00000639853.1:ENST00000571698.2:ENST00000639375.1:ENST00000577114.2:ENST00000638269.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	33	2	2.18975	3.26419	4.33863	0.0776042	0.0207276	0.196285	0.122348
chr5	154221877	154221977	2524093	0	+	0.32	(0.28,0.32]	chr5	241463	15	INTRON	INTRON	GALNT10	ENSG00000164574.16	ENST00000425427.6:ENST00000297107.11:ENST00000520647.5:ENST00000377661.2:ENST00000521781.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	33	2	2.18975	3.26419	4.33863	0.0776042	0.0207276	0.196285	0.122348
chr1	95235589	95235685	167758	0	+	0.5625	(0.515,0.57]	chr1	18155	9	INTRON	INTRON	TLCD4-RWDD3:RWDD3	ENSG00000271092.5:ENSG00000122481.17	ENST00000604534.5:ENST00000604203.1:ENST00000370202.5:ENST00000263893.10:ENST00000492639.5:ENST00000495272.5:ENST00000497058.5:ENST00000473397.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	25	2	2.23915	3.2641799999999996	4.28921	0.0596178	0.00990051	0.16883600000000001	0.0877296
chr11	9153141	9153241	4907927	0	-	0.53	(0.515,0.57]	chr11	460026	3	INTRON	INTRON	DENND5A	ENSG00000184014.9	ENST00000328194.8:ENST00000681203.1:ENST00000530780.2:ENST00000680358.1:ENST00000679999.1:ENST00000679458.1:ENST00000680470.1:ENST00000680599.1:ENST00000680554.1:ENST00000679745.1:ENST00000679926.1:ENST00000680252.1:ENST00000681425.1:ENST00000681158.1:ENST00000679460.1:ENST00000679568.1:ENST00000679446.1:ENST00000680294.1:ENST00000680742.1:ENST00000680885.1:ENST00000680576.1:ENST00000530044.5:ENST00000527700.5:ENST00000526707.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	25	2	2.23915	3.2641799999999996	4.28921	0.0596178	0.00990051	0.16883600000000001	0.0877296
chr11	64231451	64231533	4802508	0	+	0.560976	(0.515,0.57]	chr11	445421	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DNAJC4	ENSG00000110011.14	ENST00000321685.7:ENST00000628077.3:ENST00000355040.8:ENST00000536006.5:ENST00000321460.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	25	2	2.23915	3.2641799999999996	4.28921	0.0596178	0.00990051	0.16883600000000001	0.0877296
chr15	72504127	72504226	6059459	0	+	0.525253	(0.515,0.57]	chr15	576858	69	INTRON	INTRON	ARIH1	ENSG00000166233.15	ENST00000379887.9:ENST00000570085.5:ENST00000564062.1:ENST00000567762.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	25	2	2.23915	3.2641799999999996	4.28921	0.0596178	0.00990051	0.16883600000000001	0.0877296
chr17	4231780	4231880	6711052	0	-	0.55	(0.515,0.57]	chr17	657665	143	INTRON	INTRON	ANKFY1	ENSG00000185722.18	ENST00000341657.9:ENST00000648043.1:ENST00000570535.5:ENST00000574367.5:ENST00000572412.5:ENST00000570934.5:ENST00000575955.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	25	2	2.23915	3.2641799999999996	4.28921	0.0596178	0.00990051	0.16883600000000001	0.0877296
chr19	14193191	14193291	7144292	0	-	0.57	(0.515,0.57]	chr19	721329	91	INTRON	INTRON	ADGRL1	ENSG00000072071.17	ENST00000340736.10:ENST00000361434.8	protein_coding	protein_coding	protein_coding	protein_coding	1	25	2	2.23915	3.2641799999999996	4.28921	0.0596178	0.00990051	0.16883600000000001	0.0877296
chr2	99661950	99662050	1191069	0	-	0.52	(0.515,0.57]	chr2	127816	119	INTRON	INTRON	AFF3	ENSG00000144218.21	ENST00000672756.2:ENST00000409236.6:ENST00000317233.8:ENST00000409579.5:ENST00000672204.1:ENST00000430789.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	25	2	2.23915	3.2641799999999996	4.28921	0.0596178	0.00990051	0.16883600000000001	0.0877296
chr9	127558549	127558649	4355946	0	-	0.56	(0.515,0.57]	chr9	399847	264	INTRON	INTRON	NIBAN2	ENSG00000136830.12	ENST00000373314.7:ENST00000373312.4:ENST00000478917.1:ENST00000468379.1:ENST00000484348.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	25	2	2.23915	3.2641799999999996	4.28921	0.0596178	0.00990051	0.16883600000000001	0.0877296
chr8	26292284	26292362	3716095	0	+	0.384615	(0.378,0.408]	chr8	345345	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	PPP2R2A	ENSG00000221914.11	ENST00000380737.8:ENST00000520329.5:ENST00000518254.5:ENST00000524169.5:ENST00000518397.5:ENST00000522535.5:ENST00000665949.1:ENST00000522150.5:ENST00000523473.5:ENST00000521095.5:ENST00000660435.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	85	2	3.00568	3.26412	3.52256	0.00811866	5.59174e-5	0.0766625	0.00612101
chr9	34189171	34189270	4111370	0	+	0.383838	(0.378,0.408]	chr9	374718	96	INTRON	INTRON	UBAP1	ENSG00000165006.14	ENST00000625521.2:ENST00000379186.8:ENST00000297661.9:ENST00000626262.2	protein_coding	protein_coding	protein_coding	protein_coding	3	85	2	3.00568	3.26412	3.52256	0.00811866	5.59174e-5	0.0766625	0.00612101
chr7	5403760	5403860	3471882	0	-	0.4	(0.378,0.408]	chr7	324674	88	INTRON	INTRON	TNRC18	ENSG00000182095.15	ENST00000399537.8:ENST00000430969.6:ENST00000434361.5:ENST00000399434.2	protein_coding	protein_coding	protein_coding	protein_coding	6	60	2	1.29896	3.2641	5.22924	0.0575113	0.00172721	0.187655	0.0374701
chr16	11741679	11741778	6445191	0	-	0.545455	(0.515,0.57]	chr16	620837	51	INTRON	INTRON	TXNDC11	ENSG00000153066.13	ENST00000283033.10:ENST00000356957.7:ENST00000576969.5:ENST00000573174.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	32	2	2.11313	3.264055	4.41498	0.0256725	0.0106866	0.133676	0.0861859
chr22	17600393	17600492	7547531	0	-	0.353535	(0.35,0.378]	chr22	771434	3	SS3_PROX	SS3_PROX:INTRON	ATP6V1E1	ENSG00000131100.13	ENST00000253413.10:ENST00000399796.6:ENST00000399798.6:ENST00000413576.1:ENST00000481365.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	102	2	2.41088	3.2640149999999997	4.11715	0.0047981	4.60289e-5	0.0602209	0.00552588
chr17	82622796	82622896	6853427	0	-	0.33	(0.32,0.35]	chr17	679349	6	INTRON	INTRON	WDR45B	ENSG00000141580.16	ENST00000392325.9:ENST00000572583.5:ENST00000573656.5:ENST00000571835.5:ENST00000573616.5:ENST00000571767.5:ENST00000571817.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	41	2	2.35591	3.26386	4.17181	0.04531	0.0128129	0.149888	0.0990564
chr1	35840564	35840664	70320	0	+	0.51	(0.476,0.515]	chr1	8994	42	INTRON	INTRON	AGO4	ENSG00000134698.11	ENST00000373210.4	protein_coding	protein_coding	protein_coding	protein_coding	1	26	2	2.28264	3.2638249999999998	4.24501	0.0534132	0.0247713	0.179876	0.12011
chr1	51254566	51254666	98360	0	+	0.48	(0.476,0.515]	chr1	13196	173	INTRON	INTRON	RNF11	ENSG00000123091.5	ENST00000242719.4:ENST00000494873.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	26	2	2.28264	3.2638249999999998	4.24501	0.0534132	0.0247713	0.179876	0.12011
chr14	102628112	102628212	5822888	0	+	0.48	(0.476,0.515]	chr14	552490	344	INTRON	INTRON	RCOR1	ENSG00000089902.10	ENST00000262241.7	protein_coding	protein_coding	protein_coding	protein_coding	1	26	2	2.28264	3.2638249999999998	4.24501	0.0534132	0.0247713	0.179876	0.12011
chr17	47092940	47093040	6788570	0	-	0.5	(0.476,0.515]	chr17	669501	102	INTRON	INTRON	ENSG00000262879	ENSG00000262879.6	ENST00000668245.1:ENST00000573341.6:ENST00000572864.5:ENST00000576938.1:ENST00000574741.1	lncRNA	lncRNA	lncRNA	lncRNA	1	26	2	2.28264	3.2638249999999998	4.24501	0.0534132	0.0247713	0.179876	0.12011
chr4	128081081	128081178	2042796	0	+	0.505155	(0.476,0.515]	chr4	202862	28	INTRON	INTRON	LARP1B	ENSG00000138709.19	ENST00000512292.5:ENST00000326639.11:ENST00000508819.5:ENST00000394288.7:ENST00000432347.6:ENST00000649983.1:ENST00000650359.1:ENST00000648358.1:ENST00000507377.1	protein_coding	protein_coding	protein_coding	protein_coding	1	26	2	2.28264	3.2638249999999998	4.24501	0.0534132	0.0247713	0.179876	0.12011
chr7	133641537	133641637	3422066	0	+	0.49	(0.476,0.515]	chr7	319395	110	INTRON	INTRON	EXOC4	ENSG00000131558.15	ENST00000253861.5:ENST00000479839.6:ENST00000483800.5:ENST00000469115.5:ENST00000489931.5:ENST00000482089.5:ENST00000460346.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	26	2	2.28264	3.2638249999999998	4.24501	0.0534132	0.0247713	0.179876	0.12011
chr8	55760277	55760376	3954535	0	-	0.50505	(0.476,0.515]	chr8	362686	35	INTRON	INTRON	TMEM68	ENSG00000167904.16	ENST00000617782.4:ENST00000334667.6:ENST00000434581.7:ENST00000519784.5:ENST00000523073.5:ENST00000519780.5:ENST00000522090.5:ENST00000520061.5:ENST00000522030.1:ENST00000523423.5:ENST00000520414.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	26	2	2.28264	3.2638249999999998	4.24501	0.0534132	0.0247713	0.179876	0.12011
chr9	92272687	92272782	4287129	0	-	0.505263	(0.476,0.515]	chr9	394223	4	INTRON	INTRON	IARS1	ENSG00000196305.19	ENST00000375643.7:ENST00000443024.7:ENST00000447699.7:ENST00000683537.1:ENST00000684726.1:ENST00000683192.1:ENST00000683565.1:ENST00000682756.1:ENST00000684542.1:ENST00000683793.1:ENST00000683817.1:ENST00000682141.1:ENST00000682893.1:ENST00000684557.1:ENST00000498025.2:ENST00000682156.1:ENST00000627121.3:ENST00000683469.1:ENST00000683495.1:ENST00000682578.1:ENST00000682533.1:ENST00000472894.2:ENST00000684757.1:ENST00000684445.1:ENST00000683376.1:ENST00000683679.1:ENST00000683119.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	26	2	2.28264	3.2638249999999998	4.24501	0.0534132	0.0247713	0.179876	0.12011
chr9	125339284	125339383	4199053	0	+	0.494949	(0.476,0.515]	chr9	383253	13	INTRON	INTRON	GAPVD1	ENSG00000165219.23	ENST00000497580.5:ENST00000297933.11:ENST00000470056.5:ENST00000394105.6:ENST00000394083.6:ENST00000495955.5:ENST00000467750.5:ENST00000394104.6:ENST00000312123.13:ENST00000431329.5:ENST00000436712.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	26	2	2.28264	3.2638249999999998	4.24501	0.0534132	0.0247713	0.179876	0.12011
chrX	48949680	48949780	7815994	0	-	0.51	(0.476,0.515]	chrX	796867	50	INTRON	INTRON	OTUD5	ENSG00000068308.15	ENST00000376488.8:ENST00000396743.7:ENST00000455452.5:ENST00000156084.8:ENST00000428668.2:ENST00000484499.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	26	2	2.28264	3.2638249999999998	4.24501	0.0534132	0.0247713	0.179876	0.12011
chrX	101044254	101044354	7855206	0	-	0.32	(0.28,0.32]	chrX	800835	2	INTRON	INTRON	TRMT2B:TRMT2B-AS1	ENSG00000188917.15:ENSG00000225839.2	ENST00000545398.5:ENST00000372936.4:ENST00000372939.5:ENST00000372935.5:ENST00000478422.1:ENST00000443801.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA:processed_transcript	2	42	2	2.1895	3.263575	4.33765	0.039714	0.0227063	0.143072	0.124921
chr7	107924276	107924375	3379966	0	+	0.333333	(0.32,0.35]	chr7	316636	32	INTRON	INTRON	DLD	ENSG00000091140.15	ENST00000417551.5	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	3	47	2	1.83315	3.263475	4.6938	0.0313348	0.0137794	0.144381	0.0949306
chr7	105541105	105541204	3375775	0	+	0.515152	(0.476,0.515]	chr7	316053	40	INTRON	INTRON	RINT1	ENSG00000135249.8	ENST00000467392.5:ENST00000482041.5:ENST00000493041.5:ENST00000257700.7:ENST00000497979.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	14	330	2	3.1074	3.2634	3.4194	1.23972e-5	1.74397e-7	0.00280409	1.91587e-4
chr1	22063557	22063652	42311	0	+	0.431579	(0.408,0.44]	chr1	5077	16	UTR5	UTR5:EXON_MRNA:SS3_PROX:INTRON	ENSG00000289694:CDC42:CDC42-IT1	ENSG00000289694.1:ENSG00000070831.18:ENSG00000230068.2	ENST00000695855.1:ENST00000695856.1:ENST00000344548.8:ENST00000400259.5:ENST00000667384.2:ENST00000411827.2:ENST00000695858.1:ENST00000695857.1:ENST00000315554.14:ENST00000695859.1:ENST00000498236.1:ENST00000656825.1:ENST00000651171.1:ENST00000652582.1:ENST00000695860.1:ENST00000695796.1:ENST00000695797.1:ENST00000662562.2:ENST00000695798.1:ENST00000431803.2:ENST00000695799.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:nonsense_mediated_decay:lncRNA	1	26	2	2.2957	3.26333	4.23096	0.0516458	0.0278028	0.176696	0.123904
chr1	27249596	27249696	53167	0	+	0.44	(0.408,0.44]	chr1	6792	143	INTRON	INTRON	WDTC1	ENSG00000142784.16	ENST00000319394.8:ENST00000361771.7	protein_coding	protein_coding	protein_coding	protein_coding	1	26	2	2.2957	3.26333	4.23096	0.0516458	0.0278028	0.176696	0.123904
chr14	70598277	70598373	5917425	0	-	0.427083	(0.408,0.44]	chr14	562175	1	INTRON	INTRON	MED6	ENSG00000133997.12	ENST00000554963.5:ENST00000615788.4:ENST00000256379.10:ENST00000430055.6:ENST00000440435.2:ENST00000553611.5:ENST00000556044.5:ENST00000556495.5:ENST00000554870.5:ENST00000556423.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	26	2	2.2957	3.26333	4.23096	0.0516458	0.0278028	0.176696	0.123904
chr16	3704019	3704119	6434340	0	-	0.41	(0.408,0.44]	chr16	619371	4	SS5_PROX	SS5_PROX:INTRON	TRAP1	ENSG00000126602.11	ENST00000246957.10:ENST00000538171.5:ENST00000571804.5:ENST00000574941.5:ENST00000576106.5:ENST00000571011.1:ENST00000570403.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	26	2	2.2957	3.26333	4.23096	0.0516458	0.0278028	0.176696	0.123904
chr16	15706711	15706811	6307466	0	+	0.42	(0.408,0.44]	chr16	603482	47	INTRON	INTRON	NDE1	ENSG00000072864.16	ENST00000396355.5:ENST00000674888.1:ENST00000675171.1:ENST00000675951.1:ENST00000674900.1:ENST00000674588.1:ENST00000674538.1:ENST00000396354.6:ENST00000675926.1:ENST00000674995.1:ENST00000674554.1:ENST00000674581.1:ENST00000577101.6:ENST00000572756.6:ENST00000573694.5:ENST00000572967.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	26	2	2.2957	3.26333	4.23096	0.0516458	0.0278028	0.176696	0.123904
chr17	22062550	22062650	6743356	0	-	0.43	(0.408,0.44]	chr17	662109	4	SS3_PROX	SS3_PROX:INTRON	NCOR1P2	ENSG00000265019.1	ENST00000584728.1	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	1	26	2	2.2957	3.26333	4.23096	0.0516458	0.0278028	0.176696	0.123904
chr17	46180426	46180526	6784745	0	-	0.42	(0.408,0.44]	chr17	669245	78	INTRON	INTRON	KANSL1	ENSG00000120071.15	ENST00000574590.6:ENST00000572904.6:ENST00000432791.7:ENST00000575318.6:ENST00000638275.1:ENST00000262419.10:ENST00000648792.1:ENST00000639150.1:ENST00000571698.2:ENST00000639375.1:ENST00000638269.1:ENST00000639356.1:ENST00000574655.6:ENST00000639099.1:ENST00000638902.1:ENST00000576739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	26	2	2.2957	3.26333	4.23096	0.0516458	0.0278028	0.176696	0.123904
chr17	67209521	67209620	6825468	0	-	0.434343	(0.408,0.44]	chr17	674529	57	INTRON	INTRON	HELZ	ENSG00000198265.12	ENST00000358691.10:ENST00000579953.5:ENST00000580168.5:ENST00000417253.7:ENST00000580662.5:ENST00000584641.5:ENST00000581159.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:non_stop_decay:nonsense_mediated_decay:processed_transcript	1	26	2	2.2957	3.26333	4.23096	0.0516458	0.0278028	0.176696	0.123904
chr19	9423527	9423626	7132443	0	-	0.434343	(0.408,0.44]	chr19	718745	29	INTRON	INTRON	ZNF266	ENSG00000174652.20	ENST00000592904.7:ENST00000588221.5:ENST00000588933.5:ENST00000590306.5:ENST00000651268.1:ENST00000592292.5	protein_coding	protein_coding	protein_coding	protein_coding	1	26	2	2.2957	3.26333	4.23096	0.0516458	0.0278028	0.176696	0.123904
chr2	26258152	26258252	714295	0	+	0.44	(0.408,0.44]	chr2	82487	33	INTRON	INTRON	HADHB	ENSG00000138029.14	ENST00000448743.5:ENST00000537713.5:ENST00000405867.7:ENST00000317799.10:ENST00000425035.5:ENST00000412805.5	protein_coding	protein_coding	protein_coding	protein_coding	1	26	2	2.2957	3.26333	4.23096	0.0516458	0.0278028	0.176696	0.123904
chr22	50203168	50203266	7544034	0	+	0.428571	(0.408,0.44]	chr22	770973	12	INTRON	INTRON	SELENOO	ENSG00000073169.15	ENST00000380903.7	protein_coding	protein_coding	protein_coding	protein_coding	1	26	2	2.2957	3.26333	4.23096	0.0516458	0.0278028	0.176696	0.123904
chr22	50386094	50386194	7544618	0	+	0.44	(0.408,0.44]	chr22	771021	136	INTRON	INTRON	PPP6R2	ENSG00000100239.16	ENST00000359139.7:ENST00000395741.7:ENST00000612753.5:ENST00000395744.7:ENST00000216061.9	protein_coding	protein_coding	protein_coding	protein_coding	1	26	2	2.2957	3.26333	4.23096	0.0516458	0.0278028	0.176696	0.123904
chr8	97777506	97777606	3809956	0	+	0.41	(0.408,0.44]	chr8	352908	10	INTRON	INTRON	LAPTM4B	ENSG00000104341.17	ENST00000445593.6:ENST00000619747.1:ENST00000521545.7:ENST00000517924.5	protein_coding	protein_coding	protein_coding	protein_coding	1	26	2	2.2957	3.26333	4.23096	0.0516458	0.0278028	0.176696	0.123904
chr9	37080729	37080828	4117549	0	+	0.424242	(0.408,0.44]	chr9	375350	10	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SS3_PROX:SS5_PROX:INTRON	EBLN3P	ENSG00000281649.3	ENST00000664037.1:ENST00000660341.1:ENST00000662098.2:ENST00000666604.1:ENST00000653711.1:ENST00000625445.1:ENST00000658888.2:ENST00000664088.2:ENST00000664382.1:ENST00000656197.1:ENST00000653587.1:ENST00000665375.1:ENST00000692373.1:ENST00000631093.1:ENST00000685288.1:ENST00000657640.1:ENST00000629870.2:ENST00000630598.1:ENST00000625218.1:ENST00000627197.1:ENST00000654889.1	lncRNA	lncRNA	lncRNA	lncRNA	1	26	2	2.2957	3.26333	4.23096	0.0516458	0.0278028	0.176696	0.123904
chrX	11232565	11232665	7759675	0	-	0.43	(0.408,0.44]	chrX	793496	352	INTRON	INTRON	ARHGAP6	ENSG00000047648.23	ENST00000657361.1:ENST00000380736.5:ENST00000337414.9:ENST00000495242.5:ENST00000303025.10:ENST00000489330.6:ENST00000380718.1:ENST00000380717.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	26	2	2.2957	3.26333	4.23096	0.0516458	0.0278028	0.176696	0.123904
chr2	15505212	15505312	1072600	0	-	0.42	(0.408,0.44]	chr2	114435	6	INTRON	INTRON	NBAS	ENSG00000151779.13	ENST00000281513.10:ENST00000427792.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	166	2	3.25007	3.26323	3.27639	3.61891e-4	3.9894e-6	0.0176126	0.00131958
chr3	51498973	51499073	1697271	0	-	0.36	(0.35,0.378]	chr3	174430	18	INTRON	INTRON	DCAF1	ENSG00000145041.16	ENST00000504652.5:ENST00000423656.5:ENST00000684031.1	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	2.72497	3.26313	3.80129	0.0504034	0.0198266	0.17488	0.109608
chr5	57196085	57196185	2358276	0	+	0.29	(0.28,0.32]	chr5	227562	193	INTRON	INTRON	GPBP1	ENSG00000062194.16	ENST00000424459.7:ENST00000514387.6:ENST00000506184.7:ENST00000511209.5	protein_coding	protein_coding	protein_coding	protein_coding	2	44	2	2.38391	3.2630250000000003	4.14214	0.0579756	0.0122525	0.167723	0.0969406
chr7	151487477	151487576	3674600	0	-	0.282828	(0.28,0.32]	chr7	341195	23	INTRON	INTRON	RHEB	ENSG00000106615.10	ENST00000262187.10:ENST00000472642.5:ENST00000478470.5:ENST00000496004.5:ENST00000470370.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	44	2	2.38391	3.2630250000000003	4.14214	0.0579756	0.0122525	0.167723	0.0969406
chr6	17698693	17698793	3066132	0	-	0.46	(0.44,0.476]	chr6	284872	97	INTRON	INTRON	NUP153	ENSG00000124789.12	ENST00000613258.4:ENST00000537253.5:ENST00000262077.3	protein_coding	protein_coding	protein_coding	protein_coding	3	80	2	2.59888	3.263	3.92712	0.00487719	1.7642e-4	0.0640618	0.01216
chr9	70270657	70270756	4139284	0	+	0.545455	(0.515,0.57]	chr9	377236	23	INTRON	INTRON	SMC5	ENSG00000198887.9	ENST00000361138.7	protein_coding	protein_coding	protein_coding	protein_coding	3	67	2	2.7208	3.263	3.8052	0.00306828	1.67082e-4	0.0494933	0.0111796
chr19	40762300	40762400	7070203	0	+	0.51	(0.476,0.515]	chr19	706505	23	INTRON	INTRON	SNRPA	ENSG00000077312.9	ENST00000601545.5:ENST00000597353.5:ENST00000243563.8:ENST00000601393.1:ENST00000598923.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	58	2	2.9435	3.262965	3.58243	0.00929849	6.18479e-4	0.0817766	0.0223951
chr14	100293767	100293865	5968318	0	-	0.581633	(0.57,1]	chr14	567017	5	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SLC25A29	ENSG00000197119.13	ENST00000359232.8:ENST00000554912.1:ENST00000392908.7:ENST00000556505.5:ENST00000555927.5:ENST00000554224.5:ENST00000556715.6:ENST00000554291.5:ENST00000554060.1:ENST00000556868.1:ENST00000555475.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	33	2	2.89463	3.2629349999999997	3.63124	0.00788262	2.87208e-4	0.076155	0.0150568
chr2	167904574	167904674	1258848	0	-	0.4	(0.378,0.408]	chr2	133340	34	INTRON	INTRON	B3GALT1-AS1	ENSG00000235335.3	ENST00000430546.2:ENST00000657553.1:ENST00000670221.1:ENST00000436982.2	lncRNA	lncRNA	lncRNA	lncRNA	3	81	2	2.55607	3.2629200000000003	3.96977	0.00704647	9.19167e-5	0.0718189	0.00801007
chr6	35915566	35915666	3088771	0	-	0.33	(0.32,0.35]	chr6	288898	102	INTRON	INTRON	SRPK1	ENSG00000096063.16	ENST00000373825.7:ENST00000423325.6:ENST00000346162.10:ENST00000361690.7:ENST00000510290.5:ENST00000508473.5:ENST00000512445.5:ENST00000513367.1:ENST00000507909.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	60	2	1.46414	3.262765	5.06139	0.065059	0.00179023	0.179599	0.0392749
chr7	152377662	152377762	3680710	0	-	0.46	(0.44,0.476]	chr7	341660	186	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000682301.1:ENST00000452749.2:ENST00000680867.1:ENST00000683800.1:ENST00000684278.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	77	2	3.05373	3.262765	3.4718	0.00136358	6.56725e-4	0.0336321	0.0232396
chr17	39273788	39273885	6765366	0	-	0.360825	(0.35,0.378]	chr17	665443	26	INTRON	INTRON	FBXL20	ENSG00000108306.13	ENST00000264658.11:ENST00000583610.5:ENST00000394294.7:ENST00000577399.5	protein_coding	protein_coding	protein_coding	protein_coding	2	37	2	2.04358	3.2627100000000002	4.48184	0.0329533	0.0191702	0.145171	0.108861
chr16	30287761	30287861	6472885	0	-	0.5	(0.476,0.515]	chr16	625657	11	INTRON	INTRON	SMG1P5	ENSG00000183604.15	ENST00000529428.5:ENST00000411546.4:ENST00000691460.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	2	58	2	3.19119	3.2626749999999998	3.33416	0.00325748	0.00230489	0.0524329	0.0428247
chr22	22308296	22308396	7482928	0	+	0.51	(0.476,0.515]	chr22	763449	2	SS3_PROX	SS3_PROX:INTRON	ENSG00000286129:BMS1P20	ENSG00000286129.1:ENSG00000272779.1	ENST00000652112.1:ENST00000413293.1	lncRNA	lncRNA	lncRNA:transcribed_unprocessed_pseudogene	lncRNA:transcribed_unprocessed_pseudogene	2	58	2	3.19119	3.2626749999999998	3.33416	0.00325748	0.00230489	0.0524329	0.0428247
chr2	38601745	38601841	1099769	0	-	0.416667	(0.408,0.44]	chr2	117962	19	INTRON	INTRON	HNRNPLL	ENSG00000143889.16	ENST00000449105.8:ENST00000409636.5:ENST00000358367.8:ENST00000608859.5:ENST00000378915.7:ENST00000409328.5:ENST00000410076.5:ENST00000498516.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	93	2	2.70586	3.26257	3.81928	9.14702e-4	3.06208e-4	0.027804	0.0161362
chr16	71915828	71915894	6386812	0	+	0.469697	(0.44,0.476]	chr16	614091	1	SS5_PROX	SS5_PROX:INTRON	IST1	ENSG00000182149.21	ENST00000568581.5:ENST00000540296.5:ENST00000544564.5:ENST00000541571.6:ENST00000538104.5:ENST00000535424.5:ENST00000606369.5:ENST00000537613.5:ENST00000424485.6:ENST00000566536.5:ENST00000378799.11:ENST00000538565.5:ENST00000329908.12:ENST00000538850.5:ENST00000541918.5:ENST00000378798.9:ENST00000534994.5:ENST00000539186.5:ENST00000439924.6:ENST00000626438.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	94	2	3.01549	3.2625149999999996	3.50954	0.00116647	1.79714e-4	0.0312127	0.0116696
chr4	139124268	139124367	2246815	0	-	0.40404	(0.378,0.408]	chr4	219583	60	INTRON	INTRON	ELF2	ENSG00000109381.21	ENST00000394235.6:ENST00000686138.1:ENST00000379550.5:ENST00000511184.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	61	2	1.46085	3.262485	5.06412	0.0343503	0.0030522	0.147468	0.0493883
chr4	42086717	42086815	1956726	0	+	0.285714	(0.28,0.32]	chr4	196013	7	UTR3	UTR3:EXON_MRNA	SLC30A9	ENSG00000014824.14	ENST00000264451.12	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	2.51488	3.26245	4.01002	0.0434868	0.0380957	0.162255	0.141678
chr20	35061149	35061248	7332587	0	-	0.272727	[0,0.28]	chr20	746961	32	INTRON	INTRON	TRPC4AP	ENSG00000100991.12	ENST00000252015.3:ENST00000451813.6	protein_coding	protein_coding	protein_coding	protein_coding	2	45	2	2.05756	3.26241	4.46726	0.0427997	0.0352544	0.150301	0.148082
chr6	35877934	35878034	3088385	0	-	0.27	[0,0.28]	chr6	288860	32	INTRON	INTRON	SRPK1	ENSG00000096063.16	ENST00000373825.7:ENST00000423325.6:ENST00000346162.10:ENST00000361690.7:ENST00000510290.5:ENST00000373821.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	45	2	2.05756	3.26241	4.46726	0.0427997	0.0352544	0.150301	0.148082
chr15	85485409	85485509	6091591	0	+	0.35	(0.32,0.35]	chr15	579647	3	SS3_PROX	SS3_PROX:INTRON	AKAP13	ENSG00000170776.22	ENST00000559362.5:ENST00000394518.7:ENST00000560302.5:ENST00000361243.6:ENST00000560256.1	protein_coding	protein_coding	protein_coding	protein_coding	2	40	2	2.25173	3.262365	4.273	0.0368357	0.0180122	0.138959	0.114436
chr8	38202836	38202935	3735342	0	+	0.343434	(0.32,0.35]	chr8	347049	97	INTRON	INTRON	BAG4	ENSG00000156735.11	ENST00000521282.1:ENST00000432471.6:ENST00000287322.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	40	2	2.25173	3.262365	4.273	0.0368357	0.0180122	0.138959	0.114436
chr1	40056446	40056546	79778	0	+	0.46	(0.44,0.476]	chr1	10330	146	INTRON	INTRON	CAP1	ENSG00000131236.18	ENST00000372797.7:ENST00000372802.5:ENST00000449311.5:ENST00000421589.5:ENST00000414893.5:ENST00000372792.7:ENST00000372805.8:ENST00000414281.5:ENST00000420216.5:ENST00000372798.5:ENST00000340450.7:ENST00000435719.5:ENST00000427843.5:ENST00000424977.1:ENST00000417287.5:ENST00000446031.1	protein_coding	protein_coding	protein_coding	protein_coding	2	58	2	3.25801	3.26235	3.26669	0.00305435	0.00248185	0.0493883	0.0460771
chrY	11202960	11203060	7930042	0	-	0.45	(0.44,0.476]	chrY	807176	395	INTRON	INTRON	ENSG00000278212	ENSG00000278212.3	ENST00000652671.1:ENST00000651211.2:ENST00000687423.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	2	58	2	3.25801	3.26235	3.26669	0.00305435	0.00248185	0.0493883	0.0460771
chr3	184936045	184936145	1584052	0	+	0.36	(0.35,0.378]	chr3	164024	4	SS3_PROX	SS3_PROX:INTRON	VPS8	ENSG00000156931.16	ENST00000287546.8:ENST00000625842.3:ENST00000436792.6:ENST00000446204.6:ENST00000492449.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	52	2	1.7339	3.2623450000000003	4.79079	0.0260366	0.00846427	0.133676	0.0776969
chr3	161252007	161252107	1546514	0	+	0.29	(0.28,0.32]	chr3	160896	12	UTR3	UTR3:EXON_MRNA:INTRON	NMD3	ENSG00000169251.13	ENST00000472947.5:ENST00000351193.7	protein_coding	protein_coding	protein_coding	protein_coding	5	158	2	3.20503	3.262305	3.31958	4.5281e-4	9.8739e-5	0.0196892	0.00835981
chr11	43323936	43324036	4776323	0	+	0.4	(0.378,0.408]	chr11	441616	3	SS5_PROX	SS5_PROX:INTRON	API5	ENSG00000166181.13	ENST00000534695.5:ENST00000455725.6:ENST00000531273.6:ENST00000420461.6:ENST00000378852.7:ENST00000534600.5:ENST00000526394.1	protein_coding	protein_coding	protein_coding	protein_coding	3	80	2	3.08809	3.26227	3.43645	0.00171162	5.71831e-4	0.037419	0.0217398
chr20	58658922	58659022	7290249	0	+	0.38	(0.378,0.408]	chr20	741709	64	INTRON	INTRON	STX16	ENSG00000124222.22	ENST00000361830.7:ENST00000355957.9:ENST00000458280.5:ENST00000312283.12:ENST00000412911.5:ENST00000371141.8:ENST00000359617.8:ENST00000460655.5:ENST00000476384.5:ENST00000483434.5:ENST00000496117.5:ENST00000490700.5:ENST00000371132.8:ENST00000496003.5:ENST00000467096.5:ENST00000358029.8:ENST00000464640.5:ENST00000493301.5:ENST00000468590.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	80	2	3.08809	3.26227	3.43645	0.00171162	5.71831e-4	0.037419	0.0217398
chr1	8509757	8509854	370689	0	-	0.453608	(0.44,0.476]	chr1	43485	7	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000377464.5:ENST00000400907.6:ENST00000656437.1:ENST00000464972.5:ENST00000659924.1:ENST00000480342.5:ENST00000507012.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	26	2	2.39604	3.262235	4.12843	0.0404291	0.0337192	0.161534	0.134145
chr11	68496858	68496958	4817694	0	+	0.47	(0.44,0.476]	chr11	448907	357	INTRON	INTRON	PPP6R3	ENSG00000110075.15	ENST00000530427.5:ENST00000528635.5:ENST00000529907.5:ENST00000533127.5:ENST00000534534.5:ENST00000529344.5:ENST00000524845.5:ENST00000393800.7:ENST00000265637.8:ENST00000524904.5:ENST00000393801.7:ENST00000265636.9:ENST00000529710.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	26	2	2.39604	3.262235	4.12843	0.0404291	0.0337192	0.161534	0.134145
chr12	40028439	40028509	5311376	0	-	0.457143	(0.44,0.476]	chr12	505244	3	CDS	CDS:EXON_MRNA	SLC2A13	ENSG00000151229.13	ENST00000280871.9:ENST00000380858.1	protein_coding	protein_coding	protein_coding	protein_coding	1	26	2	2.39604	3.262235	4.12843	0.0404291	0.0337192	0.161534	0.134145
chr12	121347303	121347403	5437136	0	-	0.45	(0.44,0.476]	chr12	519922	4	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ANAPC5	ENSG00000089053.13	ENST00000261819.8:ENST00000541887.5:ENST00000534976.5:ENST00000441917.6:ENST00000541652.5:ENST00000544442.5:ENST00000536416.5:ENST00000539871.1:ENST00000536837.1:ENST00000545801.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	26	2	2.39604	3.262235	4.12843	0.0404291	0.0337192	0.161534	0.134145
chr14	24096391	24096491	5658379	0	+	0.46	(0.44,0.476]	chr14	539667	1	SS3_PROX	SS3_PROX:INTRON	PCK2	ENSG00000100889.12	ENST00000559250.5:ENST00000560736.5:ENST00000396973.8:ENST00000559837.5:ENST00000560106.5:ENST00000545054.6:ENST00000216780.9:ENST00000561286.5:ENST00000561050.5:ENST00000558674.5:ENST00000560657.1:ENST00000559584.5:ENST00000558096.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	26	2	2.39604	3.262235	4.12843	0.0404291	0.0337192	0.161534	0.134145
chr14	73899261	73899361	5786780	0	+	0.45	(0.44,0.476]	chr14	548202	6	INTRON	INTRON	ZNF410	ENSG00000119725.21	ENST00000540593.5:ENST00000555730.6:ENST00000324593.10:ENST00000556396.5:ENST00000555044.6:ENST00000412490.7:ENST00000555602.6:ENST00000541357.6:ENST00000398139.7:ENST00000442160.7:ENST00000554582.5:ENST00000334521.8:ENST00000615736.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	26	2	2.39604	3.262235	4.12843	0.0404291	0.0337192	0.161534	0.134145
chr15	44486900	44487000	6014948	0	+	0.47	(0.44,0.476]	chr15	572939	2	SS5_PROX	SS5_PROX:INTRON	CTDSPL2	ENSG00000137770.14	ENST00000558791.5:ENST00000260327.9:ENST00000558966.5:ENST00000558373.5	protein_coding	protein_coding	protein_coding	protein_coding	1	26	2	2.39604	3.262235	4.12843	0.0404291	0.0337192	0.161534	0.134145
chr15	89269617	89269716	6095999	0	+	0.464646	(0.44,0.476]	chr15	580129	7	INTRON	INTRON	FANCI	ENSG00000140525.20	ENST00000674831.1:ENST00000300027.12:ENST00000310775.12:ENST00000696717.1:ENST00000676003.1:ENST00000696718.1:ENST00000447611.6:ENST00000696719.1:ENST00000565522.5:ENST00000561894.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	26	2	2.39604	3.262235	4.12843	0.0404291	0.0337192	0.161534	0.134145
chr20	49153333	49153432	7352023	0	-	0.474747	(0.44,0.476]	chr20	749658	12	INTRON	INTRON	STAU1	ENSG00000124214.21	ENST00000371856.7:ENST00000371828.7:ENST00000340954.11:ENST00000347458.9:ENST00000360426.8:ENST00000371792.5:ENST00000371802.5:ENST00000437404.2:ENST00000456866.2	protein_coding	protein_coding	protein_coding	protein_coding	1	26	2	2.39604	3.262235	4.12843	0.0404291	0.0337192	0.161534	0.134145
chr22	46155287	46155385	7532292	0	+	0.469388	(0.44,0.476]	chr22	770127	4	EXON_MRNA	EXON_MRNA:INTRON	PPARA	ENSG00000186951.17	ENST00000440343.5:ENST00000407236.6:ENST00000415785.5:ENST00000420804.5:ENST00000496865.1:ENST00000624793.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	26	2	2.39604	3.262235	4.12843	0.0404291	0.0337192	0.161534	0.134145
chr3	14969489	14969589	1372000	0	+	0.46	(0.44,0.476]	chr3	144608	66	INTRON	INTRON	NR2C2	ENSG00000177463.16	ENST00000425241.6:ENST00000413118.5:ENST00000435454.5:ENST00000323373.10:ENST00000475707.5:ENST00000393102.7:ENST00000437120.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	26	2	2.39604	3.262235	4.12843	0.0404291	0.0337192	0.161534	0.134145
chr9	130875650	130875748	4215486	0	+	0.459184	(0.44,0.476]	chr9	386466	2	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000318560.6	protein_coding	protein_coding	protein_coding	protein_coding	1	26	2	2.39604	3.262235	4.12843	0.0404291	0.0337192	0.161534	0.134145
chr19	28496947	28497047	7166064	0	-	0.39	(0.378,0.408]	chr19	724189	287	INTRON	INTRON	ENSG00000283403:ENSG00000267243	ENSG00000283403.1:ENSG00000267243.6	ENST00000592347.5:ENST00000593065.5	lncRNA	lncRNA	lncRNA	lncRNA	3	80	2	2.94613	3.2621700000000002	3.57821	0.00112461	9.60401e-4	0.0308177	0.0282401
chr1	213169166	213169265	311887	0	+	0.313131	(0.28,0.32]	chr1	35951	8	INTRON	INTRON	RPS6KC1	ENSG00000136643.12	ENST00000615329.4:ENST00000543354.5:ENST00000614059.4:ENST00000543470.5:ENST00000366960.8:ENST00000366959.4:ENST00000490299.5:ENST00000468069.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	73	2	2.87382	3.26199	3.65016	0.014868	6.39301e-4	0.0989021	0.0228666
chr15	67253728	67253828	6211413	0	-	0.41	(0.408,0.44]	chr15	592825	1	SS5_PROX	SS5_PROX:INTRON	AAGAB	ENSG00000103591.13	ENST00000261880.10:ENST00000561452.5:ENST00000542650.5:ENST00000558725.5:ENST00000561229.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	42	2	1.6306	3.2619350000000003	4.89327	0.0544158	0.00458906	0.182272	0.0595107
chr16	16074726	16074826	6309023	0	+	0.43	(0.408,0.44]	chr16	603590	26	INTRON	INTRON	ABCC1	ENSG00000103222.20	ENST00000678422.1:ENST00000677164.1:ENST00000399408.7:ENST00000572882.3:ENST00000399410.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	35	2	2.00768	3.2618600000000004	4.51604	0.035843	0.0137419	0.152216	0.0949306
chr19	53077612	53077712	7210304	0	-	0.43	(0.408,0.44]	chr19	731875	2	SS3_PROX	SS3_PROX:INTRON	ZNF160	ENSG00000170949.18	ENST00000599056.5:ENST00000418871.5:ENST00000429604.5:ENST00000683776.1:ENST00000599247.5:ENST00000601982.5:ENST00000355147.9:ENST00000599729.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	35	2	2.00768	3.2618600000000004	4.51604	0.035843	0.0137419	0.152216	0.0949306
chr6	109375573	109375651	3185844	0	-	0.397436	(0.378,0.408]	chr6	296665	1	SS5_PROX	SS5_PROX:INTRON	CD164	ENSG00000135535.17	ENST00000310786.10:ENST00000413644.6:ENST00000504373.2:ENST00000324953.9:ENST00000275080.11:ENST00000499860.6:ENST00000512821.5:ENST00000506649.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	10	252	2	2.90351	3.261845	3.62018	1.00327e-4	3.54873e-7	0.00904854	3.02018e-4
chr17	16058799	16058899	6733617	0	-	0.49	(0.476,0.515]	chr17	660525	2	SS3_PROX	SS3_PROX:INTRON	NCOR1	ENSG00000141027.22	ENST00000268712.8:ENST00000395851.5:ENST00000470782.5:ENST00000395849.6:ENST00000458113.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	35	2	1.99341	3.26182	4.53023	0.037389	0.0119748	0.155878	0.0899583
chr19	34368082	34368182	7052514	0	+	0.48	(0.476,0.515]	chr19	703369	1	SS3_PROX	SS3_PROX:INTRON	GPI	ENSG00000105220.17	ENST00000587384.6:ENST00000592277.5:ENST00000642240.1:ENST00000415930.8:ENST00000588991.7:ENST00000592144.5:ENST00000589504.1:ENST00000590375.5:ENST00000356487.11:ENST00000589399.6:ENST00000591204.5:ENST00000589640.5:ENST00000647446.1:ENST00000586425.2:ENST00000643067.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	42	2	1.61586	3.261735	4.90761	0.0567093	0.00386428	0.185107	0.0542786
chr2	32366044	32366143	730868	0	+	0.515152	(0.476,0.515]	chr2	84274	82	INTRON	INTRON	BIRC6	ENSG00000115760.15	ENST00000421745.7:ENST00000648282.1	protein_coding	protein_coding	protein_coding	protein_coding	3	42	2	1.61586	3.261735	4.90761	0.0567093	0.00386428	0.185107	0.0542786
chr3	191447877	191447977	1590406	0	+	0.29	(0.28,0.32]	chr3	164637	219	INTRON	INTRON	ENSG00000223812	ENSG00000223812.8	ENST00000657540.1:ENST00000439804.6:ENST00000663647.1:ENST00000668751.1:ENST00000666632.1:ENST00000664732.1:ENST00000662007.1:ENST00000641158.1:ENST00000664994.1:ENST00000669884.1:ENST00000642133.1:ENST00000656380.1:ENST00000641055.1:ENST00000662578.1:ENST00000661668.1:ENST00000658347.1:ENST00000661029.1:ENST00000651548.2:ENST00000669360.1:ENST00000653490.1:ENST00000656942.1:ENST00000666456.1:ENST00000668276.1:ENST00000671595.1:ENST00000660290.1	lncRNA	lncRNA	lncRNA	lncRNA	2	45	2	1.76293	3.2616199999999997	4.76031	0.0766478	0.00656106	0.196164	0.0735539
chr1	39858715	39858815	428023	0	-	0.3	(0.28,0.32]	chr1	52020	9	INTRON	INTRON	TRIT1	ENSG00000043514.17	ENST00000316891.10:ENST00000648678.1:ENST00000537440.5:ENST00000372818.5:ENST00000462797.5:ENST00000441669.6:ENST00000495175.6:ENST00000491865.5:ENST00000541099.5:ENST00000492612.6:ENST00000489945.5:ENST00000486825.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	30	2	2.38101	3.261575	4.14214	0.0579756	0.0456017	0.167723	0.164236
chr10	72531359	72531459	4645976	0	-	0.31	(0.28,0.32]	chr10	427427	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	MICU1	ENSG00000107745.20	ENST00000361114.10:ENST00000476605.7:ENST00000642044.1:ENST00000635239.1:ENST00000604238.2:ENST00000603011.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	30	2	2.38101	3.261575	4.14214	0.0579756	0.0456017	0.167723	0.164236
chr11	74900747	74900846	4988718	0	-	0.313131	(0.28,0.32]	chr11	471326	368	INTRON	INTRON	XRRA1	ENSG00000166435.16	ENST00000530562.5:ENST00000340360.10:ENST00000321448.12:ENST00000684022.1:ENST00000531849.5:ENST00000527087.5:ENST00000531449.5:ENST00000529926.1:ENST00000528819.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	30	2	2.38101	3.261575	4.14214	0.0579756	0.0456017	0.167723	0.164236
chr15	45600537	45600635	6018476	0	+	0.295918	(0.28,0.32]	chr15	573552	11	INTRON	INTRON	BLOC1S6	ENSG00000104164.12	ENST00000567740.5:ENST00000567461.5:ENST00000568963.5:ENST00000562384.5:ENST00000569076.5:ENST00000568597.5:ENST00000220531.9:ENST00000567523.5:ENST00000566184.1:ENST00000565216.5:ENST00000672455.1:ENST00000564310.2:ENST00000563000.5:ENST00000565323.6:ENST00000566801.5:ENST00000568816.5:ENST00000563160.5:ENST00000565727.5:ENST00000565409.5:ENST00000564765.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	30	2	2.38101	3.261575	4.14214	0.0579756	0.0456017	0.167723	0.164236
chr2	24549488	24549588	709839	0	+	0.31	(0.28,0.32]	chr2	82200	569	INTRON	INTRON	NCOA1	ENSG00000084676.16	ENST00000348332.8:ENST00000496333.5:ENST00000406961.5:ENST00000469850.5:ENST00000405141.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	30	2	2.38101	3.261575	4.14214	0.0579756	0.0456017	0.167723	0.164236
chr3	37340399	37340499	1396748	0	+	0.3	(0.28,0.32]	chr3	146443	2	SS5_PROX	SS5_PROX:INTRON	GOLGA4	ENSG00000144674.17	ENST00000444882.5:ENST00000356847.8:ENST00000361924.7:ENST00000437131.1	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	2.38101	3.261575	4.14214	0.0579756	0.0456017	0.167723	0.164236
chr4	449222	449322	2092671	0	-	0.3	(0.28,0.32]	chr4	206783	44	INTRON	INTRON	ABCA11P:ZNF721	ENSG00000251595.7:ENSG00000182903.16	ENST00000451020.6:ENST00000514396.5:ENST00000507854.1:ENST00000515578.5:ENST00000506646.5:ENST00000507078.1:ENST00000511833.3:ENST00000338977.5:ENST00000505900.1	protein_coding	protein_coding	protein_coding:transcribed_processed_pseudogene	protein_coding:nonsense_mediated_decay:processed_transcript	1	30	2	2.38101	3.261575	4.14214	0.0579756	0.0456017	0.167723	0.164236
chr7	156857379	156857479	3687660	0	-	0.32	(0.28,0.32]	chr7	342096	201	INTRON	INTRON	LMBR1	ENSG00000105983.23	ENST00000353442.10:ENST00000415428.5:ENST00000454132.5:ENST00000434503.5:ENST00000430278.5:ENST00000434278.5:ENST00000444719.5:ENST00000461469.5:ENST00000414218.1:ENST00000434453.1:ENST00000498034.5:ENST00000433968.5:ENST00000485985.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	30	2	2.38101	3.261575	4.14214	0.0579756	0.0456017	0.167723	0.164236
chr8	67317464	67317564	3963557	0	-	0.29	(0.28,0.32]	chr8	363741	146	INTRON	INTRON	ARFGEF1	ENSG00000066777.9	ENST00000262215.8:ENST00000519436.1	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	2.38101	3.261575	4.14214	0.0579756	0.0456017	0.167723	0.164236
chr1	114739922	114740022	528450	0	-	0.29	(0.28,0.32]	chr1	62325	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	CSDE1	ENSG00000009307.17	ENST00000339438.10:ENST00000610726.5:ENST00000692719.1:ENST00000358528.9:ENST00000688211.1:ENST00000438362.7:ENST00000689217.1:ENST00000689989.1:ENST00000686025.1:ENST00000686781.1:ENST00000686123.1:ENST00000684913.1:ENST00000686235.1:ENST00000693467.1:ENST00000689732.1:ENST00000693644.1:ENST00000687759.1:ENST00000692044.1:ENST00000689885.1:ENST00000691403.1:ENST00000692629.1:ENST00000690013.1:ENST00000690420.1:ENST00000692950.1:ENST00000686667.1:ENST00000691032.1:ENST00000685676.1:ENST00000529046.6:ENST00000692672.1:ENST00000691377.1:ENST00000688611.1:ENST00000690207.1:ENST00000693311.1:ENST00000689510.1:ENST00000686581.1:ENST00000689727.1:ENST00000690784.1:ENST00000483030.2:ENST00000687548.1:ENST00000261443.9:ENST00000530886.5:ENST00000369530.5:ENST00000534699.5:ENST00000524652.2:ENST00000525132.1:ENST00000534389.2:ENST00000525878.5:ENST00000525970.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	97	2	3.06094	3.26152	3.4621	0.00218379	8.54457e-4	0.0417893	0.0265194
chr2	15414945	15415045	1071680	0	-	0.32	(0.28,0.32]	chr2	114344	123	INTRON	INTRON	NBAS	ENSG00000151779.13	ENST00000281513.10:ENST00000442506.5:ENST00000441755.5:ENST00000429842.1	protein_coding	protein_coding	protein_coding	protein_coding	3	97	2	3.06094	3.26152	3.4621	0.00218379	8.54457e-4	0.0417893	0.0265194
chr22	16788299	16788399	7546282	0	-	0.27	[0,0.28]	chr22	771315	35	INTRON	INTRON	XKR3	ENSG00000172967.8	ENST00000331428.5:ENST00000684488.1	protein_coding	protein_coding	protein_coding	protein_coding	5	182	2	2.68532	3.2614650000000003	3.83761	0.0026423	2.35168e-5	0.0459292	0.0037975
chr12	93394008	93394108	5189102	0	+	0.47	(0.44,0.476]	chr12	490794	85	INTRON	INTRON	NUDT4	ENSG00000173598.14	ENST00000337179.9:ENST00000415493.7:ENST00000549992.5:ENST00000550056.5:ENST00000547014.5:ENST00000548662.5:ENST00000546925.1	protein_coding	protein_coding	protein_coding	protein_coding	11	166	2	2.16499	3.26145	4.35791	4.9918e-4	1.84928e-5	0.020217099999999998	0.00349761
chr18	49384243	49384342	6972234	0	-	0.454545	(0.44,0.476]	chr18	689868	41	INTRON	INTRON	DYM	ENSG00000141627.14	ENST00000675505.1:ENST00000269445.10:ENST00000442713.6:ENST00000418472.6:ENST00000578596.5:ENST00000579058.5:ENST00000583353.1:ENST00000577481.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	48	2	1.43625	3.26142	5.08659	0.063142	0.00226401	0.197183	0.0425438
chr14	31186617	31186717	5858802	0	-	0.45	(0.44,0.476]	chr14	556724	5	INTRON	INTRON	HECTD1	ENSG00000092148.14	ENST00000399332.6:ENST00000553700.5:ENST00000693685.1:ENST00000692835.1:ENST00000554882.6:ENST00000611816.5:ENST00000688933.1:ENST00000691390.1:ENST00000553957.6:ENST00000687002.1:ENST00000554471.3:ENST00000556224.6:ENST00000553616.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	46	2	1.66462	3.2613950000000003	4.85817	0.0520247	0.00223254	0.159508	0.0435144
chr7	117033384	117033484	3386791	0	+	0.36	(0.35,0.378]	chr7	317151	100	INTRON	INTRON	ST7:ST7-OT4	ENSG00000004866.22:ENSG00000214188.9	ENST00000393446.6:ENST00000265437.9:ENST00000393451.7:ENST00000438863.5:ENST00000393449.5:ENST00000443979.5:ENST00000323984.8:ENST00000417919.5:ENST00000446490.5:ENST00000471110.5:ENST00000422922.5:ENST00000432298.5:ENST00000449366.5:ENST00000487459.5:ENST00000393443.5:ENST00000467538.5:ENST00000434836.5:ENST00000465133.5:ENST00000477742.5:ENST00000462544.1:ENST00000393444.7:ENST00000393447.8	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:nonsense_mediated_decay:lncRNA:processed_transcript	6	155	2	3.08996	3.261335	3.43271	1.79958e-4	4.34591e-5	0.0121761	0.00532088
chr1	207344660	207344759	303506	0	+	0.363636	(0.35,0.378]	chr1	34926	37	INTRON	INTRON	CD55	ENSG00000196352.18	ENST00000695822.1:ENST00000695823.1:ENST00000695826.1:ENST00000695825.1:ENST00000695827.1:ENST00000645323.1:ENST00000391921.9:ENST00000367064.9:ENST00000314754.12:ENST00000644836.1:ENST00000476590.1:ENST00000465534.5:ENST00000618707.2:ENST00000635614.2:ENST00000695831.1:ENST00000634386.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	136	2	3.1962	3.26131	3.32642	5.54078e-4	3.39815e-5	0.0216641	0.0046443
chr22	38674477	38674576	7588718	0	-	0.383838	(0.378,0.408]	chr22	776879	24	INTRON	INTRON	ENSG00000228274	ENSG00000228274.5	ENST00000431924.3:ENST00000666365.1:ENST00000444381.1	lncRNA	lncRNA	lncRNA	lncRNA	2	40	2	2.00398	3.26126	4.51854	0.0393906	0.00748824	0.143072	0.0772645
chr17	82820321	82820421	6694897	0	+	0.34	(0.32,0.35]	chr17	654903	50	INTRON	INTRON	TBCD	ENSG00000141556.22	ENST00000682479.1:ENST00000682722.1:ENST00000684464.1:ENST00000684544.1:ENST00000681983.1:ENST00000684361.1:ENST00000683184.1:ENST00000683282.1:ENST00000684408.1:ENST00000355528.9:ENST00000683444.1:ENST00000684776.1:ENST00000683041.1:ENST00000684760.1:ENST00000684349.1:ENST00000682213.1:ENST00000683009.1:ENST00000682921.1:ENST00000539345.6:ENST00000684000.1:ENST00000684188.1:ENST00000684429.1:ENST00000682610.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	67	2	2.9451	3.2612050000000004	3.57731	0.011051	7.67492e-4	0.0873897	0.0254532
chr1	67417326	67417425	477495	0	-	0.272727	[0,0.28]	chr1	57471	16	INTRON	INTRON	SERBP1	ENSG00000142864.15	ENST00000370994.8:ENST00000361219.11:ENST00000370995.6:ENST00000370990.5:ENST00000493607.1:ENST00000462814.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	82	2	2.97616	3.2611850000000002	3.54621	0.0128425	0.00124865	0.0926667	0.0328543
chr12	51135054	51135154	5325494	0	-	0.47	(0.44,0.476]	chr12	507890	95	INTRON	INTRON	TFCP2	ENSG00000135457.11	ENST00000257915.10:ENST00000685804.1:ENST00000549867.5:ENST00000548115.5:ENST00000548108.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	28	2	2.29842	3.261175	4.22393	0.0552483	0.0162322	0.165463	0.109464
chr19	9763111	9763181	7133633	0	-	0.457143	(0.44,0.476]	chr19	718949	3	SS5_PROX	SS5_PROX:INTRON	ZNF846	ENSG00000196605.7	ENST00000589453.5:ENST00000588267.5:ENST00000592859.1:ENST00000397902.7:ENST00000586293.5:ENST00000589412.5:ENST00000586814.5:ENST00000592587.1:ENST00000587650.1:ENST00000590471.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	28	2	2.29842	3.261175	4.22393	0.0552483	0.0162322	0.165463	0.109464
chr2	86156229	86156327	1170757	0	-	0.469388	(0.44,0.476]	chr2	124943	23	INTRON	INTRON	IMMT	ENSG00000132305.22	ENST00000449247.6:ENST00000254636.9:ENST00000410111.8:ENST00000442664.6:ENST00000419070.6:ENST00000409051.6	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	2.29842	3.261175	4.22393	0.0552483	0.0162322	0.165463	0.109464
chr22	43007930	43008030	7598282	0	-	0.47	(0.44,0.476]	chr22	778204	56	INTRON	INTRON	PACSIN2	ENSG00000100266.19	ENST00000263246.8:ENST00000453643.5:ENST00000445706.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	28	2	2.29842	3.261175	4.22393	0.0552483	0.0162322	0.165463	0.109464
chr4	25344947	25345047	1933687	0	+	0.45	(0.44,0.476]	chr4	194129	106	INTRON	INTRON	ZCCHC4	ENSG00000168228.16	ENST00000302874.9:ENST00000505451.5:ENST00000507760.5:ENST00000505412.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	28	2	2.29842	3.261175	4.22393	0.0552483	0.0162322	0.165463	0.109464
chr4	37869075	37869175	1946057	0	+	0.45	(0.44,0.476]	chr4	194892	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ENSG00000249863	ENSG00000249863.2	ENST00000509020.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	28	2	2.29842	3.261175	4.22393	0.0552483	0.0162322	0.165463	0.109464
chr8	79982215	79982315	3978490	0	-	0.45	(0.44,0.476]	chr8	364494	234	INTRON	INTRON	MRPS28	ENSG00000147586.10	ENST00000276585.9:ENST00000519386.5:ENST00000521434.5:ENST00000521605.1:ENST00000519120.1:ENST00000520946.1:ENST00000518271.1:ENST00000518371.2:ENST00000522987.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	28	2	2.29842	3.261175	4.22393	0.0552483	0.0162322	0.165463	0.109464
chr1	26460842	26460941	50491	0	+	0.414141	(0.408,0.44]	chr1	6360	3	INTRON	INTRON	DHDDS	ENSG00000117682.17	ENST00000434391.6:ENST00000236342.12:ENST00000525682.6:ENST00000526219.5:ENST00000360009.6:ENST00000431933.5:ENST00000416052.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	28	2	2.18807	3.2610349999999997	4.334	0.0708044	0.011982	0.184528	0.0962115
chr1	155463598	155463698	561899	0	-	0.43	(0.408,0.44]	chr1	67095	6	INTRON	INTRON	ASH1L	ENSG00000116539.14	ENST00000676814.1:ENST00000392403.8:ENST00000368346.7:ENST00000677213.1:ENST00000678117.1:ENST00000679097.1:ENST00000679333.1:ENST00000677042.1:ENST00000678699.1:ENST00000677825.1:ENST00000679133.1:ENST00000548830.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	28	2	2.18807	3.2610349999999997	4.334	0.0708044	0.011982	0.184528	0.0962115
chr10	24692743	24692843	4581635	0	-	0.44	(0.408,0.44]	chr10	422193	220	INTRON	INTRON	ARHGAP21	ENSG00000107863.20	ENST00000612832.4:ENST00000396432.7:ENST00000680286.1:ENST00000376410.7:ENST00000446003.5:ENST00000476499.1:ENST00000416305.1:ENST00000472150.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	28	2	2.18807	3.2610349999999997	4.334	0.0708044	0.011982	0.184528	0.0962115
chr10	67955707	67955803	4636723	0	-	0.416667	(0.408,0.44]	chr10	426332	7	EXON_LNCRNA	EXON_LNCRNA:INTRON	HERC4	ENSG00000148634.16	ENST00000277817.10:ENST00000373700.9:ENST00000412272.6:ENST00000395198.7:ENST00000473533.6:ENST00000427635.6:ENST00000480158.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	28	2	2.18807	3.2610349999999997	4.334	0.0708044	0.011982	0.184528	0.0962115
chr11	34067643	34067742	4767811	0	+	0.414141	(0.408,0.44]	chr11	440959	39	INTRON	INTRON	CAPRIN1	ENSG00000135387.21	ENST00000341394.9:ENST00000528856.5:ENST00000389645.7:ENST00000534042.5:ENST00000534825.5:ENST00000532820.5:ENST00000530820.5:ENST00000529307.1:ENST00000526494.5:ENST00000532755.5:ENST00000533641.5:ENST00000530008.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	28	2	2.18807	3.2610349999999997	4.334	0.0708044	0.011982	0.184528	0.0962115
chr13	52007986	52008086	5596881	0	-	0.42	(0.408,0.44]	chr13	534988	291	INTRON	INTRON	ATP7B	ENSG00000123191.16	ENST00000242839.10:ENST00000344297.9:ENST00000448424.7:ENST00000400370.8:ENST00000634844.1:ENST00000673772.1:ENST00000634308.1:ENST00000418097.7:ENST00000400366.6:ENST00000635406.1:ENST00000674078.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	28	2	2.18807	3.2610349999999997	4.334	0.0708044	0.011982	0.184528	0.0962115
chr15	58311494	58311593	6190016	0	-	0.434343	(0.408,0.44]	chr15	589861	323	INTRON	INTRON	ALDH1A2	ENSG00000128918.15	ENST00000558239.5:ENST00000560863.5:ENST00000558946.1:ENST00000561098.1:ENST00000558603.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	28	2	2.18807	3.2610349999999997	4.334	0.0708044	0.011982	0.184528	0.0962115
chr16	3134208	3134308	6433256	0	-	0.44	(0.408,0.44]	chr16	619153	3	SS5_PROX	SS5_PROX:INTRON	ZNF213-AS1	ENSG00000263072.9	ENST00000674022.1:ENST00000673666.1:ENST00000572691.2:ENST00000664624.1:ENST00000657201.1:ENST00000657996.1:ENST00000576490.2:ENST00000692817.1:ENST00000686529.1:ENST00000691772.1:ENST00000685085.1:ENST00000686892.1:ENST00000571963.5:ENST00000573447.2:ENST00000571449.2:ENST00000652946.1:ENST00000658602.1:ENST00000575089.2	lncRNA	lncRNA	lncRNA	lncRNA	1	28	2	2.18807	3.2610349999999997	4.334	0.0708044	0.011982	0.184528	0.0962115
chr16	23936929	23937029	6324770	0	+	0.43	(0.408,0.44]	chr16	605701	432	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000498739.1	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	2.18807	3.2610349999999997	4.334	0.0708044	0.011982	0.184528	0.0962115
chr19	2327214	2327310	7115832	0	-	0.427083	(0.408,0.44]	chr19	715323	7	INTRON	INTRON	LSM7	ENSG00000130332.15	ENST00000587502.2:ENST00000585409.2:ENST00000252622.15:ENST00000585395.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	28	2	2.18807	3.2610349999999997	4.334	0.0708044	0.011982	0.184528	0.0962115
chr19	46001916	46002015	7080899	0	+	0.424242	(0.408,0.44]	chr19	708417	52	INTRON	INTRON	CCDC61	ENSG00000104983.8	ENST00000536603.5:ENST00000595358.5:ENST00000596161.5:ENST00000594672.5:ENST00000596687.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	28	2	2.18807	3.2610349999999997	4.334	0.0708044	0.011982	0.184528	0.0962115
chr2	121733281	121733378	1222464	0	-	0.43299	(0.408,0.44]	chr2	130092	7	INTRON	INTRON	NIFK	ENSG00000155438.12	ENST00000285814.9:ENST00000447132.5:ENST00000451734.1:ENST00000477693.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	28	2	2.18807	3.2610349999999997	4.334	0.0708044	0.011982	0.184528	0.0962115
chr2	175936046	175936146	1272529	0	-	0.43	(0.408,0.44]	chr2	134519	35	INTRON	INTRON	LNPK	ENSG00000144320.14	ENST00000272748.9:ENST00000544803.5:ENST00000409660.5:ENST00000479012.1:ENST00000475515.1:ENST00000431754.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	28	2	2.18807	3.2610349999999997	4.334	0.0708044	0.011982	0.184528	0.0962115
chr21	28980318	28980418	7436567	0	-	0.41	(0.408,0.44]	chr21	758418	85	INTRON	INTRON	LTN1	ENSG00000198862.14	ENST00000614971.4:ENST00000389194.7:ENST00000361371.10:ENST00000389195.7:ENST00000483326.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	28	2	2.18807	3.2610349999999997	4.334	0.0708044	0.011982	0.184528	0.0962115
chr22	50215020	50215118	7544158	0	+	0.428571	(0.408,0.44]	chr22	770996	38	INTRON	INTRON	SELENOO	ENSG00000073169.15	ENST00000380903.7:ENST00000492092.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	28	2	2.18807	3.2610349999999997	4.334	0.0708044	0.011982	0.184528	0.0962115
chr7	131350561	131350661	3416669	0	+	0.44	(0.408,0.44]	chr7	319187	222	INTRON	INTRON	MKLN1	ENSG00000128585.18	ENST00000421797.6:ENST00000416992.6:ENST00000429546.5:ENST00000446815.5:ENST00000494286.5:ENST00000352689.11:ENST00000494785.5:ENST00000458153.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	28	2	2.18807	3.2610349999999997	4.334	0.0708044	0.011982	0.184528	0.0962115
chr9	96404982	96405082	4295238	0	-	0.43	(0.408,0.44]	chr9	394970	63	INTRON	INTRON	ZNF367	ENSG00000165244.7	ENST00000375256.5	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	2.18807	3.2610349999999997	4.334	0.0708044	0.011982	0.184528	0.0962115
chr3	42621242	42621335	1406183	0	+	0.311828	(0.28,0.32]	chr3	147670	11	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	NKTR	ENSG00000114857.19	ENST00000468735.6:ENST00000487466.5:ENST00000429888.5:ENST00000232978.13:ENST00000478488.1:ENST00000465584.5:ENST00000466553.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	243	2	3.2342	3.260975	3.28775	1.37935e-4	1.17898e-5	0.0107072	0.00253703
chr16	70004258	70004357	6509083	0	-	0.40404	(0.378,0.408]	chr16	630286	74	INTRON	INTRON	PDXDC2P-NPIPB14P	ENSG00000196696.13	ENST00000531894.5:ENST00000530079.5:ENST00000525331.6:ENST00000526478.5:ENST00000529089.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	1	29	2	2.30961	3.260935	4.21226	0.055088	0.0177403	0.165463	0.11319
chr17	75677535	75677635	6676076	0	+	0.4	(0.378,0.408]	chr17	651838	53	INTRON	INTRON	SAP30BP	ENSG00000161526.15	ENST00000583170.5:ENST00000584667.6:ENST00000355423.7:ENST00000578354.5:ENST00000577292.5:ENST00000542343.5:ENST00000579877.5:ENST00000293208.13:ENST00000579864.5:ENST00000583737.5:ENST00000578288.5:ENST00000580484.5:ENST00000582022.5:ENST00000580322.5:ENST00000583536.5:ENST00000578909.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	29	2	2.30961	3.260935	4.21226	0.055088	0.0177403	0.165463	0.11319
chr6	107411505	107411605	3181433	0	-	0.39	(0.378,0.408]	chr6	296346	768	INTRON	INTRON	PDSS2	ENSG00000164494.12	ENST00000369037.9:ENST00000369031.4	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	2.30961	3.260935	4.21226	0.055088	0.0177403	0.165463	0.11319
chr7	156959553	156959651	3453789	0	+	0.387755	(0.378,0.408]	chr7	322851	3	SS3_PROX	SS3_PROX:INTRON	NOM1	ENSG00000146909.8	ENST00000275820.4:ENST00000460332.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	29	2	2.30961	3.260935	4.21226	0.055088	0.0177403	0.165463	0.11319
chrX	71366297	71366374	7678200	0	+	0.571429	(0.57,1]	chrX	786121	2	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	TAF1	ENSG00000147133.17	ENST00000683202.1:ENST00000373790.9:ENST00000483365.2:ENST00000683352.1:ENST00000423759.6:ENST00000683782.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	56	2	2.9315	3.260915	3.59033	9.1984e-4	1.72589e-5	0.0278396	0.00315885
chr9	125237548	125237647	4352459	0	-	0.535354	(0.515,0.57]	chr9	399596	5	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HSPA5	ENSG00000044574.9	ENST00000324460.7:ENST00000680257.1:ENST00000679355.1:ENST00000681045.1:ENST00000681424.1:ENST00000681675.1:ENST00000681544.1:ENST00000680272.1:ENST00000679475.1:ENST00000680494.1:ENST00000681774.1:ENST00000680640.1:ENST00000680032.1:ENST00000681540.1:ENST00000680234.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	14	283	2	2.98174	3.26081	3.53988	9.06703e-6	5.89127e-8	0.00231903	1.05583e-4
chr20	56377344	56377444	7358731	0	-	0.31	(0.28,0.32]	chr20	750346	34	INTRON	INTRON	AURKA	ENSG00000087586.18	ENST00000395914.5:ENST00000395913.7:ENST00000312783.10:ENST00000395911.5:ENST00000395915.8:ENST00000347343.6:ENST00000371356.6:ENST00000395907.5:ENST00000441357.5	protein_coding	protein_coding	protein_coding	protein_coding	3	50	2	1.85772	3.260655	4.66359	0.0300199	0.0193496	0.142135	0.108861
chr6	47530604	47530704	2874094	0	+	0.3	(0.28,0.32]	chr6	272731	268	INTRON	INTRON	CD2AP	ENSG00000198087.7	ENST00000359314.5	protein_coding	protein_coding	protein_coding	protein_coding	3	50	2	1.85772	3.260655	4.66359	0.0300199	0.0193496	0.142135	0.108861
chr7	105050197	105050296	3374984	0	+	0.292929	(0.28,0.32]	chr7	315877	88	INTRON	INTRON	KMT2E	ENSG00000005483.22	ENST00000622386.2:ENST00000257745.9:ENST00000334884.9:ENST00000311117.8:ENST00000478990.5:ENST00000495267.5:ENST00000476671.5:ENST00000667857.1:ENST00000474203.5:ENST00000482560.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	50	2	1.85772	3.260655	4.66359	0.0300199	0.0193496	0.142135	0.108861
chr11	70407872	70407966	4821709	0	+	0.393617	(0.378,0.408]	chr11	449606	4	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	CTTN	ENSG00000085733.16	ENST00000346329.7:ENST00000301843.13:ENST00000527622.5:ENST00000482755.6:ENST00000376561.7:ENST00000415461.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	49	2	1.45712	3.26062	5.06412	0.0597975	0.0030522	0.189982	0.0493883
chr13	98560895	98560995	5643631	0	-	0.39	(0.378,0.408]	chr13	537505	390	INTRON	INTRON	STK24	ENSG00000102572.15	ENST00000539966.6:ENST00000397517.6:ENST00000491878.5:ENST00000481288.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	49	2	1.45712	3.26062	5.06412	0.0597975	0.0030522	0.189982	0.0493883
chr3	194451269	194451368	1890834	0	-	0.242424	[0,0.28]	chr3	189201	11	EXON_MRNA	EXON_MRNA:INTRON	ATP13A3	ENSG00000133657.17	ENST00000687055.1:ENST00000645538.1:ENST00000645319.2:ENST00000690810.1:ENST00000645621.1:ENST00000642744.2:ENST00000439040.6:ENST00000485194.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	9	327	2	2.88419	3.2606	3.63701	5.86058e-4	1.71493e-6	0.0224488	7.91482e-4
chr17	40020719	40020807	6767567	0	-	0.579545	(0.57,1]	chr17	665725	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MED24	ENSG00000008838.21	ENST00000394126.5:ENST00000356271.7:ENST00000394128.7:ENST00000394127.6:ENST00000491466.5:ENST00000535508.6:ENST00000422942.6:ENST00000501516.7:ENST00000470126.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	23	2	1.91937	3.26049	4.60161	0.0468438	0.00142229	0.167716	0.0340865
chr21	46268255	46268352	7471248	0	-	0.412371	(0.408,0.44]	chr21	761661	3	INTRON	INTRON	MCM3AP	ENSG00000160294.11	ENST00000397708.1:ENST00000291688.6	protein_coding	protein_coding	protein_coding	protein_coding	3	42	2	1.69566	3.2604800000000003	4.8253	0.0453922	0.0056738	0.164236	0.0653997
chr15	90777148	90777247	6101526	0	+	0.535354	(0.515,0.57]	chr15	580921	72	INTRON	INTRON	BLM	ENSG00000197299.13	ENST00000355112.8:ENST00000648453.1:ENST00000681142.1:ENST00000560509.5:ENST00000559724.5:ENST00000680772.1:ENST00000560136.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	43	2	2.01978	3.2603999999999997	4.50102	0.0165522	0.00510768	0.102621	0.0646039
chr6	89819205	89819305	3162034	0	-	0.58	(0.57,1]	chr6	294887	3	SS5_PROX	SS5_PROX:INTRON	MDN1	ENSG00000112159.12	ENST00000369393.8:ENST00000629399.2:ENST00000439638.1	protein_coding	protein_coding	protein_coding	protein_coding	5	57	2	2.55134	3.260345	3.96935	6.11018e-4	4.27649e-5	0.0223951	0.00555805
chr18	2717557	2717657	6865505	0	+	0.51	(0.476,0.515]	chr18	680035	93	INTRON	INTRON	SMCHD1	ENSG00000101596.17	ENST00000320876.11:ENST00000688342.1:ENST00000693213.1:ENST00000577880.5:ENST00000584897.5:ENST00000581711.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	42	2	1.68092	3.2602700000000002	4.83962	0.0474026	0.00480934	0.169265	0.0602209
chr1	92768807	92768907	508006	0	-	0.49	(0.476,0.515]	chr1	59886	318	INTRON	INTRON	EVI5	ENSG00000067208.16	ENST00000370331.5:ENST00000540033.2:ENST00000684568.2:ENST00000474806.1:ENST00000466778.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	26	2	2.38442	3.26014	4.13586	0.0417472	0.031846	0.161736	0.13151
chr11	3036758	3036857	4892382	0	-	0.494949	(0.476,0.515]	chr11	458458	70	INTRON	INTRON	CARS1	ENSG00000110619.18	ENST00000397111.9:ENST00000531387.5:ENST00000380525.9:ENST00000278224.13:ENST00000529772.5:ENST00000526890.5:ENST00000439280.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	26	2	2.38442	3.26014	4.13586	0.0417472	0.031846	0.161736	0.13151
chr11	130133228	130133328	4886364	0	+	0.5	(0.476,0.515]	chr11	456991	2	SS3_PROX	SS3_PROX:INTRON	APLP2	ENSG00000084234.18	ENST00000650012.1:ENST00000533616.5:ENST00000338167.10:ENST00000528499.5:ENST00000263574.9:ENST00000345598.9:ENST00000278756.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	26	2	2.38442	3.26014	4.13586	0.0417472	0.031846	0.161736	0.13151
chr12	108677771	108677871	5406235	0	-	0.49	(0.476,0.515]	chr12	516005	1	SS5_PROX	SS5_PROX:INTRON	CORO1C	ENSG00000110880.11	ENST00000261401.8:ENST00000420959.6:ENST00000541050.5:ENST00000549384.5:ENST00000421578.6:ENST00000550542.5:ENST00000549772.5:ENST00000552871.5:ENST00000547294.5:ENST00000550032.5:ENST00000551550.5:ENST00000546571.5:ENST00000551044.1:ENST00000547170.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	26	2	2.38442	3.26014	4.13586	0.0417472	0.031846	0.161736	0.13151
chr15	34406273	34406373	6132949	0	-	0.49	(0.476,0.515]	chr15	584271	2	SS5_PROX	SS5_PROX:INTRON	GOLGA8A	ENSG00000175265.18	ENST00000359187.5:ENST00000473125.5:ENST00000569781.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	26	2	2.38442	3.26014	4.13586	0.0417472	0.031846	0.161736	0.13151
chr15	41435032	41435132	6005541	0	+	0.48	(0.476,0.515]	chr15	571377	174	INTRON	INTRON	RTF1	ENSG00000137815.15	ENST00000558298.5:ENST00000389629.9:ENST00000462276.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	26	2	2.38442	3.26014	4.13586	0.0417472	0.031846	0.161736	0.13151
chr15	52552504	52552604	6177147	0	-	0.48	(0.476,0.515]	chr15	588882	4	SS3_PROX	SS3_PROX:INTRON	ARPP19	ENSG00000128989.11	ENST00000566423.5:ENST00000249822.9:ENST00000561650.5:ENST00000568196.1:ENST00000563277.5:ENST00000567669.5:ENST00000569723.5:ENST00000569281.6:ENST00000564163.5:ENST00000563566.5:ENST00000561971.1:ENST00000565288.1:ENST00000567830.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	26	2	2.38442	3.26014	4.13586	0.0417472	0.031846	0.161736	0.13151
chr15	65883725	65883824	6048714	0	+	0.494949	(0.476,0.515]	chr15	575917	36	INTRON	INTRON	RAB11A	ENSG00000103769.10	ENST00000569304.1:ENST00000564910.5:ENST00000566233.5:ENST00000261890.7:ENST00000565075.5:ENST00000569896.1:ENST00000567671.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	26	2	2.38442	3.26014	4.13586	0.0417472	0.031846	0.161736	0.13151
chr16	69991749	69991843	6508953	0	-	0.478723	(0.476,0.515]	chr16	630270	7	INTRON	INTRON	PDXDC2P-NPIPB14P	ENSG00000196696.13	ENST00000531894.5:ENST00000530079.5:ENST00000525331.6	lncRNA	lncRNA	lncRNA	lncRNA	1	26	2	2.38442	3.26014	4.13586	0.0417472	0.031846	0.161736	0.13151
chr17	57403452	57403551	6634226	0	+	0.494949	(0.476,0.515]	chr17	648041	16	INTRON	INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000674961.1:ENST00000582453.5:ENST00000675656.1:ENST00000322684.7:ENST00000579590.5:ENST00000442934.6:ENST00000579180.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	26	2	2.38442	3.26014	4.13586	0.0417472	0.031846	0.161736	0.13151
chr2	61319627	61319727	1129017	0	-	0.49	(0.476,0.515]	chr2	121385	3	SS3_PROX	SS3_PROX:INTRON	USP34	ENSG00000115464.15	ENST00000398571.7	protein_coding	protein_coding	protein_coding	protein_coding	1	26	2	2.38442	3.26014	4.13586	0.0417472	0.031846	0.161736	0.13151
chr22	39423060	39423158	7515348	0	+	0.489796	(0.476,0.515]	chr22	767880	7	INTRON	INTRON	TAB1	ENSG00000100324.14	ENST00000216160.11:ENST00000331454.3:ENST00000473491.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	26	2	2.38442	3.26014	4.13586	0.0417472	0.031846	0.161736	0.13151
chr3	129255577	129255674	1499193	0	+	0.494845	(0.476,0.515]	chr3	156564	1	SS3_PROX	SS3_PROX:INTRON	COPG1	ENSG00000181789.14	ENST00000314797.10:ENST00000515725.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	26	2	2.38442	3.26014	4.13586	0.0417472	0.031846	0.161736	0.13151
chr5	69173850	69173950	2380046	0	+	0.5	(0.476,0.515]	chr5	229164	2	SS3_PROX	SS3_PROX:INTRON	CCNB1	ENSG00000134057.15	ENST00000506572.5:ENST00000256442.10:ENST00000508407.5:ENST00000505500.5:ENST00000503507.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	26	2	2.38442	3.26014	4.13586	0.0417472	0.031846	0.161736	0.13151
chr6	160040924	160041024	3023698	0	+	0.51	(0.476,0.515]	chr6	282069	2	SS5_PROX	SS5_PROX:INTRON	IGF2R	ENSG00000197081.16	ENST00000676781.1:ENST00000677704.1:ENST00000356956.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	26	2	2.38442	3.26014	4.13586	0.0417472	0.031846	0.161736	0.13151
chr7	135936307	135936407	3649059	0	-	0.51	(0.476,0.515]	chr7	339202	59	INTRON	INTRON	MTPN	ENSG00000105887.11	ENST00000393085.4:ENST00000435723.1	protein_coding	protein_coding	protein_coding	protein_coding	1	26	2	2.38442	3.26014	4.13586	0.0417472	0.031846	0.161736	0.13151
chr8	39081058	39081156	3739150	0	+	0.510204	(0.476,0.515]	chr8	347570	33	INTRON	INTRON	ADAM9	ENSG00000168615.13	ENST00000678474.1:ENST00000676765.1:ENST00000676936.1:ENST00000677908.1:ENST00000677004.1:ENST00000677165.1:ENST00000481058.2:ENST00000676643.1:ENST00000676669.1:ENST00000679268.1:ENST00000677582.1:ENST00000676617.1:ENST00000677137.1:ENST00000678540.1:ENST00000677359.1:ENST00000678730.1:ENST00000487273.7:ENST00000678253.1:ENST00000676489.1:ENST00000379917.7:ENST00000468065.5:ENST00000481873.7:ENST00000676919.1:ENST00000678863.1:ENST00000484143.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	26	2	2.38442	3.26014	4.13586	0.0417472	0.031846	0.161736	0.13151
chr12	12461150	12461250	5080117	0	+	0.44	(0.408,0.44]	chr12	480124	250	INTRON	INTRON	BORCS5	ENSG00000165714.11	ENST00000314565.9:ENST00000542728.5:ENST00000298571.6	protein_coding	protein_coding	protein_coding	protein_coding	2	38	2	1.81572	3.25991	4.7041	0.0626779	0.00381677	0.175915	0.0562562
chr2	97516943	97517043	1183492	0	-	0.37	(0.35,0.378]	chr2	126902	6	INTRON	INTRON	ANKRD36B	ENSG00000196912.13	ENST00000359901.9:ENST00000258459.12	protein_coding	protein_coding	protein_coding	protein_coding	2	41	2	1.93432	3.2598450000000003	4.58537	0.0481438	0.00703328	0.153019	0.0754576
chr8	125185294	125185394	3854426	0	+	0.42	(0.408,0.44]	chr8	355249	26	INTRON	INTRON	NSMCE2	ENSG00000156831.8	ENST00000517532.5:ENST00000287437.8:ENST00000522563.5:ENST00000517315.1	protein_coding	protein_coding	protein_coding	protein_coding	2	59	2	2.84077	3.2598149999999997	3.67886	0.0132196	3.86173e-4	0.0940535	0.017761
chr17	82855418	82855518	6695250	0	+	0.49	(0.476,0.515]	chr17	654911	89	INTRON	INTRON	TBCD	ENSG00000141556.22	ENST00000682479.1:ENST00000682722.1:ENST00000684464.1:ENST00000684544.1:ENST00000681983.1:ENST00000684361.1:ENST00000683184.1:ENST00000683282.1:ENST00000684408.1:ENST00000355528.9:ENST00000683444.1:ENST00000684776.1:ENST00000683041.1:ENST00000684760.1:ENST00000684349.1:ENST00000682213.1:ENST00000683009.1:ENST00000682921.1:ENST00000539345.6:ENST00000684000.1:ENST00000684188.1:ENST00000684429.1:ENST00000682610.1:ENST00000683821.1:ENST00000682654.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	45	2	1.52615	3.259785	4.99342	0.0739267	0.00139274	0.190914	0.0341261
chr1	246555575	246555674	680878	0	-	0.272727	[0,0.28]	chr1	79810	39	INTRON	INTRON	TFB2M	ENSG00000162851.8	ENST00000366514.5	protein_coding	protein_coding	protein_coding	protein_coding	2	44	2	1.8986	3.25972	4.62084	0.0531512	0.0313633	0.179787	0.13151
chr9	2820198	2820298	4228323	0	-	0.27	[0,0.28]	chr9	388687	1	SS3_PROX	SS3_PROX:INTRON	PUM3	ENSG00000080608.10	ENST00000397885.3	protein_coding	protein_coding	protein_coding	protein_coding	2	44	2	1.8986	3.25972	4.62084	0.0531512	0.0313633	0.179787	0.13151
chr16	85604415	85604514	6415876	0	+	0.464646	(0.44,0.476]	chr16	615470	477	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	5	124	2	2.86521	3.2597199999999997	3.65423	5.69284e-4	2.41976e-5	0.0220462	0.00385018
chr1	2287303	2287403	2757	0	+	0.43	(0.408,0.44]	chr1	557	389	INTRON	INTRON	SKI	ENSG00000157933.10	ENST00000378536.5:ENST00000508416.1:ENST00000478223.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	26	2	2.3975	3.259685	4.12187	0.040266	0.0354689	0.161534	0.137535
chr12	57286856	57286956	5337796	0	-	0.43	(0.408,0.44]	chr12	510633	24	INTRON	INTRON	R3HDM2	ENSG00000179912.21	ENST00000393811.6:ENST00000402412.6:ENST00000347140.7:ENST00000358907.6:ENST00000441731.6:ENST00000634871.1:ENST00000429355.6:ENST00000403821.6:ENST00000547262.1:ENST00000547019.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	26	2	2.3975	3.259685	4.12187	0.040266	0.0354689	0.161534	0.137535
chr12	128821821	128821919	5447724	0	-	0.428571	(0.408,0.44]	chr12	521509	21	INTRON	INTRON	SLC15A4	ENSG00000139370.12	ENST00000266771.10:ENST00000376744.8:ENST00000376740.8:ENST00000539703.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	26	2	2.3975	3.259685	4.12187	0.040266	0.0354689	0.161534	0.137535
chr4	109523022	109523121	2019478	0	+	0.424242	(0.408,0.44]	chr4	200830	10	INTRON	INTRON	SEC24B	ENSG00000138802.11	ENST00000504968.6:ENST00000399100.6:ENST00000265175.5	protein_coding	protein_coding	protein_coding	protein_coding	1	26	2	2.3975	3.259685	4.12187	0.040266	0.0354689	0.161534	0.137535
chr6	17785841	17785941	3066498	0	-	0.42	(0.408,0.44]	chr6	284946	2	SS3_PROX	SS3_PROX:INTRON	KIF13A	ENSG00000137177.20	ENST00000378814.9:ENST00000502297.5:ENST00000259711.11:ENST00000378826.6:ENST00000378843.6:ENST00000636847.1:ENST00000358380.10:ENST00000506044.1:ENST00000514714.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	26	2	2.3975	3.259685	4.12187	0.040266	0.0354689	0.161534	0.137535
chr7	107545415	107545514	3612841	0	-	0.424242	(0.408,0.44]	chr7	336704	177	INTRON	INTRON	COG5	ENSG00000164597.15	ENST00000297135.9:ENST00000347053.8:ENST00000393603.7:ENST00000475638.6:ENST00000605888.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	26	2	2.3975	3.259685	4.12187	0.040266	0.0354689	0.161534	0.137535
chr16	50302861	50302961	6348970	0	+	0.56	(0.515,0.57]	chr16	609453	10	INTRON	INTRON	ADCY7	ENSG00000121281.13	ENST00000394697.7:ENST00000673801.1:ENST00000566433.6:ENST00000673973.1:ENST00000537579.5:ENST00000254235.7:ENST00000567277.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	81	2	2.67294	3.259595	3.84625	0.00112534	1.34155e-4	0.0306963	0.00998237
chr19	3194415	3194512	6998931	0	+	0.453608	(0.44,0.476]	chr19	694094	6	INTRON	INTRON	NCLN	ENSG00000125912.11	ENST00000590671.5:ENST00000246117.9:ENST00000588428.5	protein_coding	protein_coding	protein_coding	protein_coding	2	59	2	3.08591	3.25948	3.43305	0.00481262	0.00159668	0.0638089	0.0364566
chr3	152367795	152367895	1535979	0	+	0.31	(0.28,0.32]	chr3	160003	322	INTRON	INTRON	MBNL1	ENSG00000152601.18	ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000495875.6:ENST00000324210.10:ENST00000493459.5:ENST00000459747.1:ENST00000460591.5:ENST00000545754.5:ENST00000357472.7:ENST00000324196.9:ENST00000498502.5:ENST00000463374.5:ENST00000485910.5:ENST00000465907.6:ENST00000492948.5:ENST00000485509.5:ENST00000464596.5	protein_coding	protein_coding	protein_coding	protein_coding	6	69	2	1.31424	3.25942	5.2046	0.0580847	0.00448664	0.188651	0.0593175
chr4	73247786	73247886	2160717	0	-	0.32	(0.28,0.32]	chr4	212799	248	INTRON	INTRON	ANKRD17	ENSG00000132466.20	ENST00000358602.9:ENST00000558247.5:ENST00000330838.10:ENST00000561029.1	protein_coding	protein_coding	protein_coding	protein_coding	4	56	2	1.47299	3.2593900000000002	5.04579	0.0597769	0.00714672	0.189982	0.0723634
chr5	131791214	131791314	2720687	0	-	0.3	(0.28,0.32]	chr5	255730	462	INTRON	INTRON	FNIP1	ENSG00000217128.13	ENST00000510461.6:ENST00000307954.12:ENST00000307968.11:ENST00000511848.1	protein_coding	protein_coding	protein_coding	protein_coding	4	56	2	1.47299	3.2593900000000002	5.04579	0.0597769	0.00714672	0.189982	0.0723634
chr13	50080725	50080824	5594581	0	-	0.454545	(0.44,0.476]	chr13	534723	47	INTRON	INTRON	DLEU2	ENSG00000231607.14	ENST00000621282.4:ENST00000688690.1:ENST00000668305.1:ENST00000425586.5:ENST00000686946.1:ENST00000458725.7:ENST00000692504.1:ENST00000443587.6:ENST00000686700.1:ENST00000691340.1:ENST00000433070.7:ENST00000659339.1:ENST00000662092.1:ENST00000666359.2:ENST00000449579.2:ENST00000421758.6:ENST00000690259.1	lncRNA	lncRNA	lncRNA	lncRNA	8	171	2	2.71649	3.259385	3.80228	8.06377e-5	1.83571e-5	0.00750247	0.00349761
chr12	122080065	122080165	5239875	0	+	0.42	(0.408,0.44]	chr12	497496	4	INTRON	INTRON	MLXIP	ENSG00000175727.14	ENST00000319080.12	protein_coding	protein_coding	protein_coding	protein_coding	2	59	2	3.14706	3.25934	3.37162	0.00382411	0.00208674	0.0562562	0.0411801
chr12	111999545	111999644	5414427	0	-	0.353535	(0.35,0.378]	chr12	517089	73	INTRON	INTRON	TMEM116	ENSG00000198270.13	ENST00000550831.7:ENST00000552374.7:ENST00000355445.7:ENST00000547878.6:ENST00000549537.6:ENST00000552801.6:ENST00000548283.6:ENST00000550800.6:ENST00000550037.5:ENST00000551297.6:ENST00000550020.6:ENST00000546537.6:ENST00000549425.5:ENST00000552839.6:ENST00000546962.5:ENST00000550233.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	51	2	1.59505	3.2592999999999996	4.92355	0.040425	0.00573514	0.161534	0.0657377
chr2	39074871	39074971	1101876	0	-	0.37	(0.35,0.378]	chr2	118302	63	INTRON	INTRON	SOS1	ENSG00000115904.15	ENST00000692089.1:ENST00000402219.8:ENST00000690876.1:ENST00000395038.6:ENST00000691229.1:ENST00000689668.1:ENST00000690679.1:ENST00000461545.2:ENST00000451331.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	51	2	1.59505	3.2592999999999996	4.92355	0.040425	0.00573514	0.161534	0.0657377
chr14	21260027	21260126	5835073	0	-	0.545455	(0.515,0.57]	chr14	554465	51	INTRON	INTRON	HNRNPC	ENSG00000092199.19	ENST00000336053.10:ENST00000553300.6:ENST00000554969.5:ENST00000556142.5:ENST00000554455.5:ENST00000430246.6:ENST00000553753.5:ENST00000555309.5:ENST00000555914.5:ENST00000557442.5:ENST00000556628.5:ENST00000556513.5:ENST00000555883.5:ENST00000557201.5:ENST00000556897.5:ENST00000420743.6:ENST00000554539.5:ENST00000554383.5:ENST00000555215.5:ENST00000555137.5:ENST00000554891.5:ENST00000556226.5:ENST00000555176.5:ENST00000553614.5:ENST00000557336.1:ENST00000557768.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	50	2	3.1473	3.2592749999999997	3.37125	0.00397184	0.00136343	0.0549214	0.0339121
chr4	2909731	2909831	1915706	0	+	0.57	(0.515,0.57]	chr4	192334	3	SS5_PROX	SS5_PROX:INTRON	ADD1	ENSG00000087274.19	ENST00000683351.1:ENST00000398125.5:ENST00000264758.11:ENST00000513328.6:ENST00000503455.6:ENST00000355842.7:ENST00000651918.1:ENST00000398129.5:ENST00000398123.6:ENST00000514940.5:ENST00000541051.5:ENST00000513762.2:ENST00000536424.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	50	2	3.1473	3.2592749999999997	3.37125	0.00397184	0.00136343	0.0549214	0.0339121
chr5	54054586	54054686	2618351	0	-	0.53	(0.515,0.57]	chr5	248837	64	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	34	2	2.01737	3.259195	4.50102	0.0352218	0.00510768	0.137535	0.0646039
chr8	99510503	99510603	3816277	0	+	0.54	(0.515,0.57]	chr8	353274	22	INTRON	INTRON	VPS13B	ENSG00000132549.20	ENST00000496144.5:ENST00000683334.1:ENST00000357162.7:ENST00000358544.7:ENST00000682153.1:ENST00000682358.1:ENST00000355155.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	34	2	2.01737	3.259195	4.50102	0.0352218	0.00510768	0.137535	0.0646039
chr7	152193011	152193111	3678816	0	-	0.53	(0.515,0.57]	chr7	341494	48	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000360104.8:ENST00000262189.11:ENST00000683200.1:ENST00000682283.1:ENST00000473186.5:ENST00000679882.1:ENST00000680969.1:ENST00000681033.1:ENST00000682176.1:ENST00000683159.1:ENST00000679645.1:ENST00000681635.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	91	2	2.41918	3.259135	4.09909	0.0013845	4.72555e-5	0.0341261	0.00593159
chr16	56944373	56944471	6361278	0	+	0.285714	(0.28,0.32]	chr16	610641	11	UTR3	UTR3:EXON_MRNA	HERPUD1	ENSG00000051108.15	ENST00000439977.7	protein_coding	protein_coding	protein_coding	protein_coding	5	71	2	1.92947	3.25911	4.58875	0.0230574	0.00937907	0.118056	0.0860074
chr3	123952692	123952790	1804085	0	-	0.27551	[0,0.28]	chr3	181267	2	UTR5	UTR5:EXON_MRNA:INTRON	CCDC14	ENSG00000175455.16	ENST00000463996.1:ENST00000409697.8:ENST00000488653.6:ENST00000485727.5:ENST00000495381.5:ENST00000409657.5:ENST00000489746.5:ENST00000433542.7:ENST00000310351.8:ENST00000483247.1:ENST00000435910.5:ENST00000477268.5:ENST00000438440.2:ENST00000417438.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	83	2	2.81922	3.2591099999999997	3.699	0.0197411	6.64135e-4	0.109608	0.0233423
chr17	29258138	29258238	6747434	0	-	0.37	(0.35,0.378]	chr17	663218	24	UTR3	UTR3:EXON_MRNA	NUFIP2	ENSG00000108256.9	ENST00000225388.9	protein_coding	protein_coding	protein_coding	protein_coding	5	138	2	2.54394	3.258965	3.97399	0.0028214	3.93466e-6	0.0472361	0.00131614
chrX	153960614	153960714	7912085	0	-	0.42	(0.408,0.44]	chrX	805486	2	SS3_PROX	SS3_PROX:INTRON	HCFC1	ENSG00000172534.14	ENST00000310441.12:ENST00000369984.4:ENST00000461098.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	58	2	3.15414	3.25896	3.36378	0.00469847	0.0016048	0.0600108	0.0367961
chr12	55779894	55779994	5332443	0	-	0.51	(0.476,0.515]	chr12	509126	189	INTRON	INTRON	SARNP	ENSG00000205323.9	ENST00000546604.5:ENST00000552884.5:ENST00000336133.8:ENST00000552080.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	77	2	2.69886	3.2588999999999997	3.81894	0.00385209	1.96038e-4	0.0542786	0.0122528
chr7	138538903	138539003	3435435	0	+	0.21	[0,0.28]	chr7	319996	1	SS5_PROX	SS5_PROX:INTRON	TRIM24	ENSG00000122779.18	ENST00000343526.9:ENST00000415680.6:ENST00000497516.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	54	2	1.75741	3.258525	4.75964	0.0424454	0.0232081	0.161763	0.118148
chr7	30596825	30596923	3301446	0	+	0.387755	(0.378,0.408]	chr7	306515	5	INTRON	INTRON	GARS1	ENSG00000106105.15	ENST00000675051.1:ENST00000470392.2:ENST00000674643.1:ENST00000675529.1:ENST00000674807.1:ENST00000675810.1:ENST00000676088.1:ENST00000674815.1:ENST00000676403.1:ENST00000485784.2:ENST00000676210.1:ENST00000478124.6:ENST00000454308.6:ENST00000389266.8:ENST00000675693.1:ENST00000676259.1:ENST00000675651.1:ENST00000674616.1:ENST00000674737.1:ENST00000675859.1:ENST00000676140.1:ENST00000674969.1:ENST00000676164.1:ENST00000675886.1:ENST00000444666.6:ENST00000675587.1:ENST00000674851.1:ENST00000675863.1:ENST00000675025.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	38	2	2.41037	3.25849	4.10661	0.0399023	0.0100185	0.143072	0.0880217
chr1	155708332	155708432	229705	0	+	0.32	(0.28,0.32]	chr1	26994	187	INTRON	INTRON	DAP3	ENSG00000132676.16	ENST00000471642.6:ENST00000471214.5:ENST00000343043.7:ENST00000368336.10:ENST00000535183.5:ENST00000421487.6:ENST00000496863.5:ENST00000465375.5:ENST00000462002.5:ENST00000470830.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	49	2	1.71442	3.2584850000000003	4.80255	0.0454351	0.0137406	0.164236	0.0949306
chr1	162511005	162511104	238126	0	+	0.30303	(0.28,0.32]	chr1	28666	68	INTRON	INTRON	UHMK1	ENSG00000152332.16	ENST00000545294.5:ENST00000538489.5:ENST00000489294.2:ENST00000282169.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	49	2	1.71442	3.2584850000000003	4.80255	0.0454351	0.0137406	0.164236	0.0949306
chr14	76312015	76312115	5797119	0	+	0.29	(0.28,0.32]	chr14	549230	7	INTRON	INTRON	ESRRB	ENSG00000119715.15	ENST00000512784.6	protein_coding	protein_coding	protein_coding	protein_coding	3	49	2	1.71442	3.2584850000000003	4.80255	0.0454351	0.0137406	0.164236	0.0949306
chr3	15787740	15787840	1623719	0	-	0.32	(0.28,0.32]	chr3	168013	57	INTRON	INTRON	ANKRD28	ENSG00000206560.12	ENST00000399451.6:ENST00000624145.3:ENST00000683139.1:ENST00000412318.5:ENST00000497037.5:ENST00000451422.1:ENST00000498524.5:ENST00000439830.5:ENST00000461696.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	49	2	1.71442	3.2584850000000003	4.80255	0.0454351	0.0137406	0.164236	0.0949306
chr9	91876360	91876460	4284526	0	-	0.45	(0.44,0.476]	chr9	393909	1002	INTRON	INTRON	ROR2	ENSG00000169071.15	ENST00000375715.5:ENST00000375708.4:ENST00000550066.5:ENST00000495386.5:ENST00000546883.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	209	2	2.87199	3.2584549999999997	3.64492	5.61782e-5	3.54017e-6	0.00655354	0.0012234
chr15	28310068	28310168	6123946	0	-	0.4	(0.378,0.408]	chr15	583407	102	INTRON	INTRON	HERC2	ENSG00000128731.18	ENST00000261609.13:ENST00000564734.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	39	2	1.8252	3.258445	4.69169	0.0619563	0.00432302	0.174514	0.0599409
chr3	158129286	158129386	1538468	0	+	0.39	(0.378,0.408]	chr3	160262	49	INTRON	INTRON	RSRC1	ENSG00000174891.14	ENST00000480820.5:ENST00000494002.5:ENST00000295930.7:ENST00000471994.5:ENST00000683733.1:ENST00000682221.1:ENST00000683831.1:ENST00000683516.1:ENST00000482822.3:ENST00000476899.6:ENST00000464171.5:ENST00000611884.5:ENST00000682164.1:ENST00000684604.1:ENST00000683899.1:ENST00000682500.1:ENST00000684683.1:ENST00000684512.1:ENST00000683394.1:ENST00000684156.1:ENST00000312179.10:ENST00000475278.6:ENST00000480119.5:ENST00000468344.5:ENST00000471911.5:ENST00000683137.1:ENST00000477788.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	60	2	2.95459	3.2583349999999998	3.56208	0.00957623	6.94246e-4	0.0820838	0.0240761
chr11	87039483	87039583	4842824	0	+	0.3	(0.28,0.32]	chr11	451837	9	INTRON	INTRON	TMEM135	ENSG00000166575.17	ENST00000340353.11:ENST00000529023.5:ENST00000526733.5:ENST00000305494.6:ENST00000532959.5:ENST00000525018.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	72	2	3.08462	3.25824	3.43186	0.0078976	0.00160646	0.076155	0.0367961
chr18	57603143	57603243	6980512	0	-	0.35	(0.32,0.35]	chr18	690658	2	SS3_PROX	SS3_PROX:INTRON	NARS1	ENSG00000134440.12	ENST00000256854.10:ENST00000589314.1:ENST00000586807.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	48	2	1.97654	3.25821	4.53988	0.0202178	0.0199113	0.120668	0.109913
chr1	235274144	235274244	663322	0	-	0.4	(0.378,0.408]	chr1	78552	130	INTRON	INTRON	ARID4B	ENSG00000054267.22	ENST00000349213.7:ENST00000366603.6:ENST00000264183.9:ENST00000421364.5:ENST00000491632.5:ENST00000418304.1:ENST00000466653.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	64	2	1.70666	3.2581700000000002	4.80968	0.0140577	0.00679828	0.102916	0.0711802
chr15	56940885	56940985	6032334	0	+	0.42	(0.408,0.44]	chr15	574663	194	INTRON	INTRON	TCF12	ENSG00000140262.18	ENST00000438423.6:ENST00000267811.9:ENST00000333725.10:ENST00000560190.5:ENST00000559609.5:ENST00000558908.5:ENST00000557843.5:ENST00000557947.5:ENST00000561152.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	79	2	2.92033	3.2579849999999997	3.59564	0.00162151	5.73354e-4	0.0367655	0.0217398
chr2	169585199	169585299	906478	0	+	0.45	(0.44,0.476]	chr2	100016	3	SS5_PROX	SS5_PROX:INTRON	PPIG	ENSG00000138398.17	ENST00000678088.1:ENST00000677392.1:ENST00000433207.6:ENST00000679324.1:ENST00000414307.6:ENST00000676508.1:ENST00000260970.8:ENST00000678695.1:ENST00000409714.7:ENST00000530152.5:ENST00000677750.1:ENST00000676557.1:ENST00000678721.1:ENST00000462903.6:ENST00000676756.1:ENST00000679107.1:ENST00000678499.1:ENST00000678638.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	77	2	2.86452	3.257935	3.65135	0.00159222	6.34922e-4	0.0367961	0.023163
chr7	107603606	107603705	3379146	0	+	0.454545	(0.44,0.476]	chr7	316475	2	INTRON	INTRON	DUS4L-BCAP29:BCAP29	ENSG00000288558.2:ENSG00000075790.12	ENST00000673689.1:ENST00000673720.1:ENST00000673780.1:ENST00000673709.1:ENST00000673970.1:ENST00000674049.1:ENST00000673992.1:ENST00000673665.1:ENST00000674062.1:ENST00000673784.1:ENST00000673757.1:ENST00000005259.9:ENST00000465919.5:ENST00000494086.5:ENST00000482371.5:ENST00000445771.6:ENST00000442065.5:ENST00000457837.5:ENST00000379117.6:ENST00000379119.6:ENST00000491150.5:ENST00000436699.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	77	2	2.86452	3.257935	3.65135	0.00159222	6.34922e-4	0.0367961	0.023163
chr7	72915621	72915721	3330155	0	+	0.51	(0.476,0.515]	chr7	309571	14	INTRON	INTRON	POM121	ENSG00000196313.13	ENST00000627934.3:ENST00000395270.5	protein_coding	protein_coding	protein_coding	protein_coding	3	77	2	2.77151	3.2579200000000004	3.74433	0.00288481	2.85053e-4	0.0475859	0.0150568
chr19	18994992	18995092	7153416	0	-	0.48	(0.476,0.515]	chr19	723008	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	SUGP2	ENSG00000064607.17	ENST00000593795.5:ENST00000594773.5:ENST00000337018.10:ENST00000452918.7:ENST00000330854.15:ENST00000601879.5:ENST00000600239.5:ENST00000600377.1:ENST00000597280.5:ENST00000598240.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	14	326	2	3.10634	3.25787	3.4094	1.95182e-6	1.69106e-6	8.71903e-4	8.48598e-4
chr1	35624683	35624783	422147	0	-	0.43	(0.408,0.44]	chr1	50860	149	INTRON	INTRON	PSMB2	ENSG00000126067.12	ENST00000373237.4:ENST00000621781.4:ENST00000630477.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	48	2	1.49523	3.257755	5.02028	0.0534846	0.00303216	0.180041	0.0493883
chr7	129848204	129848303	3636912	0	-	0.323232	(0.32,0.35]	chr7	338182	85	INTRON	INTRON	UBE2H	ENSG00000186591.13	ENST00000355621.8:ENST00000649897.1:ENST00000473814.6:ENST00000496698.5:ENST00000472396.5:ENST00000480245.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	50	2	2.14793	3.25774	4.36755	0.0300552	0.0110079	0.129138	0.0927187
chr2	10186210	10186310	691366	0	+	0.55	(0.515,0.57]	chr2	81109	301	INTRON	INTRON	RRM2	ENSG00000171848.16	ENST00000641498.1:ENST00000381786.7	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	3	42	2	1.91916	3.25773	4.5963	0.0231902	0.00370287	0.118148	0.0561162
chr6	43519616	43519705	2871029	0	+	0.516854	(0.515,0.57]	chr6	272202	3	EXON_MRNA	EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	POLR1C	ENSG00000171453.20	ENST00000428025.6:ENST00000646188.1:ENST00000481352.6:ENST00000512472.5:ENST00000372344.6:ENST00000607635.2:ENST00000646433.1:ENST00000646700.1:ENST00000304004.7:ENST00000643799.1:ENST00000642195.1:ENST00000645141.1:ENST00000488601.6:ENST00000643341.1:ENST00000423780.1:ENST00000455605.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	42	2	1.91916	3.25773	4.5963	0.0231902	0.00370287	0.118148	0.0561162
chr7	148791632	148791731	3444637	0	+	0.50505	(0.476,0.515]	chr7	321266	8	INTRON	INTRON	CUL1	ENSG00000055130.18	ENST00000409469.5:ENST00000662716.1:ENST00000665936.1:ENST00000663044.1:ENST00000602748.5:ENST00000663835.1:ENST00000655324.1:ENST00000662132.1:ENST00000325222.9:ENST00000656001.1:ENST00000666124.1:ENST00000671421.1:ENST00000671397.1:ENST00000662670.1:ENST00000660240.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	78	2	2.68023	3.25767	3.83511	0.00353671	2.63754e-4	0.0546236	0.0149561
chr1	16343871	16343971	382534	0	-	0.48	(0.476,0.515]	chr1	44888	281	INTRON	INTRON	FBXO42	ENSG00000037637.11	ENST00000375592.8	protein_coding	protein_coding	protein_coding	protein_coding	8	202	2	2.89208	3.257625	3.62317	4.83014e-4	3.22329e-7	0.0203603	2.8571e-4
chr15	90214736	90214836	6098235	0	+	0.52	(0.515,0.57]	chr15	580426	4	SS3_PROX	SS3_PROX:INTRON	SEMA4B	ENSG00000185033.15	ENST00000559322.5:ENST00000559300.5:ENST00000561085.1:ENST00000332496.10:ENST00000558895.5:ENST00000559792.5:ENST00000411539.7:ENST00000560089.5:ENST00000558051.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	38	2	1.67758	3.25761	4.83764	0.0471728	0.00279527	0.168737	0.0469265
chr12	111589855	111589955	5413138	0	-	0.53	(0.515,0.57]	chr12	516941	251	INTRON	INTRON	ATXN2	ENSG00000204842.18	ENST00000642389.2:ENST00000608853.5:ENST00000672613.1:ENST00000673436.1:ENST00000643669.2:ENST00000616825.4:ENST00000389153.10:ENST00000550104.5:ENST00000483311.6:ENST00000672335.1:ENST00000673557.1:ENST00000673283.1:ENST00000673449.1:ENST00000535949.5:ENST00000542287.6:ENST00000644883.1:ENST00000647305.1:ENST00000671792.1:ENST00000392645.6:ENST00000672105.1:ENST00000549455.1:ENST00000548492.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	80	2	2.53705	3.25753	3.97801	0.00186194	9.14583e-5	0.039946	0.00850096
chr3	50020510	50020610	1423765	0	+	0.35	(0.32,0.35]	chr3	149994	206	INTRON	INTRON	RBM6	ENSG00000004534.15	ENST00000442092.5:ENST00000443081.5:ENST00000419610.5:ENST00000441115.5:ENST00000422955.5:ENST00000454079.5:ENST00000266022.9:ENST00000425608.5:ENST00000434592.5:ENST00000464013.5:ENST00000483350.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	90	2	2.72473	3.25753	3.79033	0.00433316	2.87593e-4	0.0579683	0.0150609
chr4	151003410	151003510	2271653	0	-	0.37	(0.35,0.378]	chr4	220921	740	INTRON	INTRON	LRBA	ENSG00000198589.14	ENST00000357115.9:ENST00000651943.2:ENST00000510413.5:ENST00000651035.1:ENST00000507224.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	30	2	2.32443	3.257325	4.19022	0.0544216	0.0209891	0.164972	0.122348
chr9	4796319	4796419	4094899	0	+	0.33	(0.32,0.35]	chr9	373155	27	INTRON	INTRON	RCL1	ENSG00000120158.12	ENST00000381750.9:ENST00000381732.3:ENST00000442869.5:ENST00000473230.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	46	2	1.61669	3.257185	4.89768	0.0578816	0.00793135	0.188651	0.076155
chr7	158794615	158794713	3689461	0	-	0.632653	(0.57,1]	chr7	342409	5	INTRON	INTRON	ESYT2	ENSG00000117868.18	ENST00000251527.10:ENST00000275418.13:ENST00000652148.1:ENST00000483958.5:ENST00000497111.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	31	2	1.71424	3.257175	4.80011	0.0279017	6.07135e-4	0.137011	0.0226059
chr17	63799805	63799886	6661222	0	+	0.345679	(0.32,0.35]	chr17	649972	2	SS5_PROX	SS5_PROX:INTRON	DDX42	ENSG00000198231.14	ENST00000578681.5:ENST00000583590.5:ENST00000389924.7:ENST00000359353.9:ENST00000578137.5:ENST00000584261.5:ENST00000577940.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	61	2	1.61591	3.2567950000000003	4.89768	0.0277247	0.00793135	0.137011	0.076155
chr2	61456472	61456572	1130411	0	-	0.46	(0.44,0.476]	chr2	121499	353	INTRON	INTRON	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000453133.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	48	2	1.54868	3.256795	4.96491	0.0457575	0.0034249	0.164677	0.0517761
chr16	91177	91269	6425276	0	-	0.521739	(0.515,0.57]	chr16	617319	2	INTRON	INTRON	NPRL3	ENSG00000103148.17	ENST00000611875.5:ENST00000622194.4:ENST00000621703.4:ENST00000399953.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	44	2	2.11384	3.2564200000000003	4.399	0.0118599	0.00708863	0.0899583	0.0754923
chr11	61367029	61367128	4796313	0	+	0.474747	(0.44,0.476]	chr11	444229	9	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	TMEM138	ENSG00000149483.13	ENST00000542946.2:ENST00000689076.1:ENST00000451389.7:ENST00000693557.1:ENST00000692785.1:ENST00000685597.1:ENST00000692667.1:ENST00000540194.6:ENST00000688279.1:ENST00000688430.1:ENST00000278826.11:ENST00000507563.7:ENST00000691720.1:ENST00000689882.1:ENST00000543594.6:ENST00000692219.1:ENST00000686820.1:ENST00000423772.6:ENST00000545420.1:ENST00000381787.2:ENST00000539776.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	29	2	2.5364	3.25633	3.97626	0.0309324	0.0300538	0.142135	0.13151
chr21	32318317	32318417	7438025	0	-	0.46	(0.44,0.476]	chr21	758738	4	SS3_PROX	SS3_PROX:INTRON	URB1	ENSG00000142207.7	ENST00000382751.4	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	2.5364	3.25633	3.97626	0.0309324	0.0300538	0.142135	0.13151
chr4	82895280	82895378	2180153	0	-	0.489796	(0.476,0.515]	chr4	214415	24	EXON_LNCRNA	EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SEC31A:THAP9-AS1	ENSG00000138674.17:ENSG00000251022.6	ENST00000355196.6:ENST00000503210.5:ENST00000507676.5:ENST00000506495.5:ENST00000507051.1:ENST00000504520.6:ENST00000504792.6:ENST00000512932.5:ENST00000511271.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	9	217	2	3.1964	3.256285	3.31617	1.38837e-5	8.56809e-6	0.00295979	0.00210871
chr1	35925170	35925269	71084	0	+	0.393939	(0.378,0.408]	chr1	9124	56	UTR3	UTR3:EXON_MRNA	AGO1	ENSG00000092847.13	ENST00000373204.6:ENST00000674426.1	protein_coding	protein_coding	protein_coding	protein_coding	2	61	2	3.1136	3.25616	3.39872	0.00443339	0.0019852	0.061054	0.0404516
chr1	246929134	246929233	681935	0	-	0.575758	(0.57,1]	chr1	80043	104	INTRON	INTRON	AHCTF1	ENSG00000153207.16	ENST00000648844.2:ENST00000326225.3:ENST00000366508.5	protein_coding	protein_coding	protein_coding	protein_coding	3	28	2	1.83769	3.25606	4.67443	0.0297587	8.07515e-4	0.12908	0.0258804
chr1	26730363	26730459	51518	0	+	0.28125	(0.28,0.32]	chr1	6553	1	INTRON	INTRON	ARID1A	ENSG00000117713.21	ENST00000430799.7:ENST00000324856.13:ENST00000637465.1:ENST00000457599.6:ENST00000524572.1:ENST00000374152.7:ENST00000636219.1	protein_coding	protein_coding	protein_coding	protein_coding	2	72	2	3.16101	3.2560450000000003	3.35108	0.0061861	0.00221345	0.0677395	0.0435144
chr10	73439671	73439771	4649574	0	-	0.36	(0.35,0.378]	chr10	427853	4	SS5_PROX	SS5_PROX:INTRON	PPP3CB	ENSG00000107758.16	ENST00000360663.10:ENST00000394828.6:ENST00000394829.6:ENST00000430762.6	protein_coding	protein_coding	protein_coding	protein_coding	2	63	2	3.21677	3.256035	3.2953	0.0031465	0.00313804	0.0514466	0.0500431
chr6	37285445	37285542	2855592	0	+	0.463918	(0.44,0.476]	chr6	269973	6	INTRON	INTRON	TBC1D22B	ENSG00000065491.8	ENST00000373491.3	protein_coding	protein_coding	protein_coding	protein_coding	5	105	2	2.53021	3.256025	3.98184	8.87528e-4	1.34748e-4	0.0271952	0.0106044
chr1	32183439	32183537	64198	0	+	0.581633	(0.57,1]	chr1	8165	15	INTRON	INTRON	TXLNA	ENSG00000084652.16	ENST00000373610.8:ENST00000373609.1	protein_coding	protein_coding	protein_coding	protein_coding	4	34	2	2.06823	3.255945	4.44366	0.00680672	0.00210922	0.0711884	0.0425419
chr16	16550600	16550700	6311368	0	+	0.46	(0.44,0.476]	chr16	604098	506	INTRON	INTRON	ENSG00000260126	ENSG00000260126.2	ENST00000567465.2	lncRNA	lncRNA	lncRNA	lncRNA	4	94	2	2.42643	3.255935	4.08544	0.0033369	7.98065e-5	0.0528877	0.00801397
chr16	21441811	21441910	6460733	0	-	0.484848	(0.476,0.515]	chr16	623226	12	INTRON	INTRON	NPIPB3	ENSG00000169246.16	ENST00000545358.5:ENST00000543368.1:ENST00000544154.1	protein_coding	retained_intron	protein_coding	retained_intron:processed_transcript	7	156	2	2.7004	3.25584	3.81128	1.70478e-4	1.64105e-5	0.0113543	0.00324999
chr1	30949826	30949926	411713	0	-	0.31	(0.28,0.32]	chr1	49634	3	SS5_PROX	SS5_PROX:INTRON	PUM1	ENSG00000134644.16	ENST00000426105.7:ENST00000373747.7:ENST00000257075.9:ENST00000424085.6:ENST00000525843.5:ENST00000440538.6:ENST00000498419.5:ENST00000373741.8:ENST00000373742.6:ENST00000529846.5:ENST00000525997.1:ENST00000527498.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	57	2	1.64429	3.2558	4.86731	0.0365539	0.0116253	0.153932	0.0889104
chr2	87510126	87510226	826476	0	+	0.34	(0.32,0.35]	chr2	92446	4	INTRON	INTRON	CYTOR:ENSG00000284879	ENSG00000222041.12:ENSG00000284879.1	ENST00000642796.1:ENST00000643589.1:ENST00000642451.1:ENST00000646386.1:ENST00000644478.1:ENST00000409139.6:ENST00000331944.10:ENST00000644125.1:ENST00000643743.1:ENST00000644577.1:ENST00000643276.1:ENST00000409898.2:ENST00000419680.6:ENST00000644976.1:ENST00000643070.1:ENST00000646855.1:ENST00000414584.1:ENST00000455131.5:ENST00000646636.1:ENST00000642293.1:ENST00000423846.5:ENST00000644040.1:ENST00000645138.1:ENST00000437561.2:ENST00000629257.1:ENST00000645729.1:ENST00000413202.1	lncRNA	lncRNA	lncRNA	lncRNA	1	29	2	2.56618	3.255735	3.94529	0.0693433	0.0274185	0.184298	0.136498
chr2	120096162	120096262	859127	0	+	0.35	(0.32,0.35]	chr2	96408	25	INTRON	INTRON	EPB41L5	ENSG00000115109.14	ENST00000263713.10:ENST00000443902.6:ENST00000331393.8:ENST00000443124.5:ENST00000452780.1:ENST00000489017.5:ENST00000461128.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	29	2	2.56618	3.255735	3.94529	0.0693433	0.0274185	0.184298	0.136498
chr22	28739290	28739389	7573492	0	-	0.343434	(0.32,0.35]	chr22	774437	7	INTRON	INTRON	CHEK2	ENSG00000183765.23	ENST00000416671.5:ENST00000348295.7:ENST00000404276.6:ENST00000425190.7:ENST00000649563.1:ENST00000405598.5:ENST00000382580.6:ENST00000650281.1:ENST00000433028.6:ENST00000439200.5:ENST00000650233.1:ENST00000398017.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	29	2	2.56618	3.255735	3.94529	0.0693433	0.0274185	0.184298	0.136498
chr6	96810477	96810577	3162973	0	-	0.34	(0.32,0.35]	chr6	294999	102	INTRON	INTRON	GPR63	ENSG00000112218.9	ENST00000229955.4	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	2.56618	3.255735	3.94529	0.0693433	0.0274185	0.184298	0.136498
chr6	127285277	127285348	2958555	0	+	0.323944	(0.32,0.35]	chr6	278158	2	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	RNF146	ENSG00000118518.17	ENST00000476956.5:ENST00000609447.5:ENST00000356799.6:ENST00000368314.6:ENST00000477776.5:ENST00000609944.5:ENST00000608991.5:ENST00000610153.1:ENST00000489534.5:ENST00000610162.5:ENST00000608340.5:ENST00000480444.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	29	2	2.56618	3.255735	3.94529	0.0693433	0.0274185	0.184298	0.136498
chr9	136462123	136462211	4374819	0	-	0.340909	(0.32,0.35]	chr9	403041	5	INTRON	INTRON	SEC16A	ENSG00000148396.19	ENST00000290037.10:ENST00000313050.11:ENST00000371706.8:ENST00000453963.5:ENST00000277537.10:ENST00000684901.1:ENST00000690691.1:ENST00000431893.3	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	2.56618	3.255735	3.94529	0.0693433	0.0274185	0.184298	0.136498
chr2	101284214	101284312	1199300	0	-	0.44898	(0.44,0.476]	chr2	128157	18	INTRON	INTRON	RNF149	ENSG00000163162.9	ENST00000424632.5:ENST00000295317.4:ENST00000490553.1:ENST00000463726.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	35	2	2.0776	3.2556849999999997	4.43377	0.0292951	0.0162803	0.141862	0.101453
chr8	128068070	128068169	3862826	0	+	0.464646	(0.44,0.476]	chr8	355563	180	INTRON	INTRON	PVT1	ENSG00000249859.13	ENST00000667305.1:ENST00000690350.1:ENST00000653522.1:ENST00000661830.1:ENST00000657289.1:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000657211.1:ENST00000653845.1:ENST00000651587.1:ENST00000692980.1:ENST00000654324.1:ENST00000657693.1:ENST00000666080.1:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000662410.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000657356.1:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000667714.1:ENST00000654105.1:ENST00000664995.1:ENST00000670714.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000668123.1:ENST00000666776.1:ENST00000659912.1:ENST00000670532.1:ENST00000523068.2:ENST00000671088.1:ENST00000663461.1:ENST00000513868.6:ENST00000692433.1:ENST00000523190.7:ENST00000685606.1:ENST00000690788.1:ENST00000685634.1:ENST00000653990.1:ENST00000655783.1:ENST00000656411.1:ENST00000664742.1:ENST00000655099.1:ENST00000662709.1:ENST00000512617.7:ENST00000660122.1:ENST00000666452.1:ENST00000659666.1:ENST00000659892.1:ENST00000521600.5:ENST00000522875.5:ENST00000653497.1:ENST00000668098.1:ENST00000659106.1:ENST00000666147.1:ENST00000658350.1:ENST00000656999.1:ENST00000664610.1:ENST00000671092.1:ENST00000653853.1:ENST00000652492.1:ENST00000658429.1:ENST00000660781.1:ENST00000660912.1:ENST00000650930.1:ENST00000663715.1:ENST00000652883.1:ENST00000657844.1:ENST00000660659.1:ENST00000661391.1:ENST00000660146.1:ENST00000671587.1:ENST00000658018.1:ENST00000666878.1:ENST00000652993.1:ENST00000658305.1:ENST00000656077.1:ENST00000666039.1:ENST00000668619.1:ENST00000668479.1:ENST00000660069.1:ENST00000658158.1:ENST00000652728.1:ENST00000653608.1:ENST00000669509.1:ENST00000522414.2:ENST00000670535.1:ENST00000670009.1:ENST00000668215.1:ENST00000668351.1:ENST00000657682.1:ENST00000657945.1:ENST00000658065.1:ENST00000655148.1:ENST00000666223.1:ENST00000666105.1:ENST00000668480.1	lncRNA	lncRNA	lncRNA	lncRNA	2	35	2	2.0776	3.2556849999999997	4.43377	0.0292951	0.0162803	0.141862	0.101453
chr4	55423587	55423682	1960876	0	+	0.442105	(0.44,0.476]	chr4	196578	6	EXON_MRNA	EXON_MRNA:INTRON	TMEM165	ENSG00000134851.13	ENST00000381334.10:ENST00000506198.5:ENST00000508404.5:ENST00000514904.5:ENST00000508561.5:ENST00000608091.1:ENST00000509575.1:ENST00000506103.2:ENST00000515591.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	124	2	3.19785	3.25563	3.31341	4.51048e-4	3.0973e-5	0.0196417	0.00443703
chr12	64436074	64436174	5153225	0	+	0.52	(0.515,0.57]	chr12	487832	4	SS5_PROX	SS5_PROX:INTRON	XPOT	ENSG00000184575.12	ENST00000332707.10	protein_coding	protein_coding	protein_coding	protein_coding	1	25	2	2.34087	3.25562	4.17037	0.0469761	0.0139194	0.151917	0.10247
chr12	124837694	124837794	5446323	0	-	0.53	(0.515,0.57]	chr12	521285	196	INTRON	INTRON	SCARB1	ENSG00000073060.17	ENST00000339570.9:ENST00000261693.11:ENST00000679605.1:ENST00000681686.1:ENST00000680926.1:ENST00000680556.1:ENST00000680982.1:ENST00000680596.1:ENST00000415380.6:ENST00000681117.1:ENST00000538291.5:ENST00000546215.5:ENST00000535005.5:ENST00000539320.3:ENST00000545493.1:ENST00000541661.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	25	2	2.34087	3.25562	4.17037	0.0469761	0.0139194	0.151917	0.10247
chr14	75057751	75057851	5923678	0	-	0.52	(0.515,0.57]	chr14	562992	37	INTRON	INTRON	ACYP1	ENSG00000119640.9	ENST00000555463.1:ENST00000555694.5:ENST00000238618.8:ENST00000357971.7	protein_coding	protein_coding	protein_coding	protein_coding	1	25	2	2.34087	3.25562	4.17037	0.0469761	0.0139194	0.151917	0.10247
chr15	60394373	60394473	6195303	0	-	0.57	(0.515,0.57]	chr15	590355	4	SS5_PROX	SS5_PROX:INTRON	ANXA2	ENSG00000182718.18	ENST00000396024.7:ENST00000559818.6:ENST00000679109.1:ENST00000676687.1:ENST00000558169.6:ENST00000557906.6:ENST00000558558.6:ENST00000559113.6:ENST00000559780.6:ENST00000559956.6:ENST00000560468.6:ENST00000678870.1:ENST00000678061.1:ENST00000678450.1:ENST00000677968.1:ENST00000451270.7:ENST00000558985.6:ENST00000678796.1:ENST00000559647.2:ENST00000332680.8:ENST00000421017.6:ENST00000560466.5:ENST00000558132.5:ENST00000561022.5:ENST00000560367.6:ENST00000558503.6:ENST00000558998.5:ENST00000559559.5:ENST00000560165.5:ENST00000559725.5:ENST00000677258.1:ENST00000559467.5:ENST00000561445.5:ENST00000557937.5:ENST00000557904.5:ENST00000559370.5:ENST00000560546.5:ENST00000557986.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	25	2	2.34087	3.25562	4.17037	0.0469761	0.0139194	0.151917	0.10247
chr7	7685454	7685554	3276153	0	+	0.53	(0.515,0.57]	chr7	304695	89	INTRON	INTRON	UMAD1	ENSG00000219545.12	ENST00000493246.5:ENST00000682710.1:ENST00000463725.5:ENST00000638342.1:ENST00000636849.1:ENST00000639343.1:ENST00000639110.1:ENST00000471760.5:ENST00000482067.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	25	2	2.34087	3.25562	4.17037	0.0469761	0.0139194	0.151917	0.10247
chr8	98609872	98609972	3997995	0	-	0.56	(0.515,0.57]	chr8	366060	77	INTRON	INTRON	STK3	ENSG00000104375.17	ENST00000617590.1:ENST00000419617.7:ENST00000523601.5:ENST00000518582.5:ENST00000518165.5:ENST00000521649.5:ENST00000424861.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	25	2	2.34087	3.25562	4.17037	0.0469761	0.0139194	0.151917	0.10247
chr12	111980982	111981082	5414240	0	-	0.48	(0.476,0.515]	chr12	517083	18	INTRON	INTRON	TMEM116	ENSG00000198270.13	ENST00000550831.7:ENST00000552374.7:ENST00000355445.7:ENST00000547878.6:ENST00000549537.6:ENST00000552801.6:ENST00000548283.6:ENST00000550800.6:ENST00000550037.5:ENST00000551297.6:ENST00000550020.6:ENST00000546537.6:ENST00000549425.5:ENST00000552839.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	58	2	2.8863	3.25547	3.62464	0.0111679	5.079e-4	0.0877435	0.0202328
chr8	11817249	11817349	3702674	0	+	0.35	(0.32,0.35]	chr8	343503	70	INTRON	INTRON	FDFT1	ENSG00000079459.13	ENST00000538689.4:ENST00000615631.4:ENST00000618539.4:ENST00000530337.5:ENST00000623368.3:ENST00000446331.6:ENST00000443614.6:ENST00000220584.9:ENST00000525607.5:ENST00000525283.5:ENST00000529464.5:ENST00000525900.5:ENST00000528812.5:ENST00000622850.2:ENST00000530664.5:ENST00000525954.5:ENST00000531249.2:ENST00000532266.5:ENST00000528643.5:ENST00000525777.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	59	2	1.37958	3.255405	5.13123	0.0577841	0.00394704	0.188484	0.0548259
chr12	120900877	120900977	5435873	0	-	0.43	(0.408,0.44]	chr12	519663	654	INTRON	INTRON	SPPL3	ENSG00000157837.16	ENST00000353487.7:ENST00000536996.5:ENST00000543608.5:ENST00000543854.5	protein_coding	protein_coding	protein_coding	protein_coding	6	143	2	2.74252	3.2554049999999997	3.76829	4.34321e-4	1.18617e-5	0.019116	0.0025447
chr12	122512871	122512970	5442100	0	-	0.464646	(0.44,0.476]	chr12	520551	13	INTRON	INTRON	RSRC2	ENSG00000111011.18	ENST00000331738.12:ENST00000532695.5:ENST00000433877.6:ENST00000527173.6:ENST00000392442.6:ENST00000525335.6:ENST00000344591.8:ENST00000528263.1:ENST00000527399.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	36	2	2.27304	3.255295	4.23755	0.0263357	0.0158915	0.122221	0.109464
chr2	169586888	169586988	906495	0	+	0.41	(0.408,0.44]	chr2	100017	16	INTRON	INTRON	PPIG	ENSG00000138398.17	ENST00000678088.1:ENST00000677392.1:ENST00000433207.6:ENST00000679324.1:ENST00000414307.6:ENST00000676508.1:ENST00000260970.8:ENST00000678695.1:ENST00000409714.7:ENST00000530152.5:ENST00000677750.1:ENST00000676557.1:ENST00000678721.1:ENST00000462903.6:ENST00000676756.1:ENST00000679107.1:ENST00000678499.1:ENST00000678638.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	66	2	1.32496	3.25516	5.18536	0.0566224	6.17381e-4	0.167389	0.0223951
chr9	109066363	109066463	4312060	0	-	0.48	(0.476,0.515]	chr9	396343	14	INTRON	INTRON	TMEM245	ENSG00000106771.13	ENST00000374586.8:ENST00000413712.6:ENST00000491854.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	58	2	3.13389	3.2551050000000004	3.37632	0.00405473	0.00195267	0.0578376	0.0400465
chr9	120455863	120455962	4332618	0	-	0.353535	(0.35,0.378]	chr9	398023	16	INTRON	INTRON	CDK5RAP2	ENSG00000136861.19	ENST00000349780.9:ENST00000360190.8:ENST00000687279.1:ENST00000687633.1:ENST00000684780.1:ENST00000687311.1:ENST00000479584.2:ENST00000690814.1:ENST00000686842.1:ENST00000693714.1:ENST00000693386.1:ENST00000692746.1:ENST00000686376.1:ENST00000692155.1:ENST00000690646.1:ENST00000693433.1:ENST00000688923.1:ENST00000473282.6:ENST00000480112.5:ENST00000685866.1:ENST00000689688.1:ENST00000416449.6:ENST00000691504.1:ENST00000360822.8:ENST00000693728.1:ENST00000483412.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	85	2	2.72093	3.255025	3.78912	0.00314173	4.25686e-4	0.0514466	0.0189958
chr17	29116240	29116340	6746742	0	-	0.56	(0.515,0.57]	chr17	663109	4	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MYO18A	ENSG00000196535.19	ENST00000527372.7:ENST00000531253.5:ENST00000533112.5:ENST00000530254.6:ENST00000588791.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	50	2	3.03037	3.2549799999999998	3.47959	0.00608732	8.38022e-4	0.0676501	0.0263691
chr2	32528344	32528441	732569	0	+	0.515464	(0.515,0.57]	chr2	84608	20	EXON_LNCRNA	EXON_LNCRNA:INTRON	BIRC6:ENSG00000276517	ENSG00000115760.15:ENSG00000276517.1	ENST00000421745.7:ENST00000471232.5:ENST00000617415.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	2	50	2	3.03037	3.2549799999999998	3.47959	0.00608732	8.38022e-4	0.0676501	0.0263691
chr6	15502705	15502804	2825521	0	+	0.525253	(0.515,0.57]	chr6	265236	9	INTRON	INTRON	JARID2	ENSG00000008083.14	ENST00000341776.7:ENST00000397311.4:ENST00000474854.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	50	2	3.03037	3.2549799999999998	3.47959	0.00608732	8.38022e-4	0.0676501	0.0263691
chr8	101202134	101202232	4006253	0	-	0.540816	(0.515,0.57]	chr8	366735	4	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ZNF706	ENSG00000120963.12	ENST00000520984.5:ENST00000311212.9:ENST00000519744.5:ENST00000517844.5:ENST00000520347.5:ENST00000519882.5:ENST00000521272.5:ENST00000518336.5:ENST00000523146.1:ENST00000519916.1:ENST00000523922.1:ENST00000520454.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	50	2	3.03037	3.2549799999999998	3.47959	0.00608732	8.38022e-4	0.0676501	0.0263691
chr7	99089110	99089209	3582593	0	-	0.535354	(0.515,0.57]	chr7	333700	78	INTRON	INTRON	SMURF1	ENSG00000198742.10	ENST00000361368.7:ENST00000361125.1:ENST00000472627.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	50	2	3.25412	3.2547949999999997	3.25547	0.00261721	0.00224554	0.0455413	0.0435144
chr17	63801312	63801410	6661240	0	+	0.5	(0.476,0.515]	chr17	649980	3	INTRON	INTRON	DDX42	ENSG00000198231.14	ENST00000578681.5:ENST00000583590.5:ENST00000389924.7:ENST00000359353.9:ENST00000578137.5:ENST00000584261.5:ENST00000577940.6:ENST00000579511.1:ENST00000577978.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	45	2	2.16306	3.2547699999999997	4.34648	0.0193566	0.00973468	0.108861	0.0877284
chr12	104302874	104302974	5210169	0	+	0.36	(0.35,0.378]	chr12	493210	114	INTRON	INTRON	TXNRD1	ENSG00000198431.17	ENST00000525566.6:ENST00000526266.5:ENST00000503506.6:ENST00000526691.5:ENST00000531691.5:ENST00000526390.5:ENST00000531689.5:ENST00000529546.5:ENST00000529751.1:ENST00000528079.6:ENST00000526580.5:ENST00000529784.5:ENST00000524698.5:ENST00000527688.5:ENST00000527335.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	44	2	1.65083	3.254765	4.8587	0.0521072	0.00695662	0.177022	0.0718189
chr7	156730903	156731002	3686374	0	-	0.373737	(0.35,0.378]	chr7	342011	18	INTRON	INTRON	LMBR1	ENSG00000105983.23	ENST00000353442.10:ENST00000448926.5:ENST00000415428.5:ENST00000454132.5:ENST00000434503.5:ENST00000461603.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	44	2	1.65083	3.254765	4.8587	0.0521072	0.00695662	0.177022	0.0718189
chr7	121100893	121100992	3394767	0	+	0.262626	[0,0.28]	chr7	317723	4	INTRON	INTRON	CPED1	ENSG00000106034.18	ENST00000310396.10:ENST00000428526.5:ENST00000450913.6:ENST00000423795.5:ENST00000443817.1	protein_coding	protein_coding	protein_coding	protein_coding	2	87	2	2.54624	3.2547300000000003	3.96322	0.0388449	2.04896e-4	0.143072	0.0124557
chr2	75911379	75911479	817273	0	+	0.3	(0.28,0.32]	chr2	91391	385	INTRON	INTRON	ENSG00000287474	ENSG00000287474.1	ENST00000670606.1	lncRNA	lncRNA	lncRNA	lncRNA	2	74	2	3.07744	3.25451	3.43158	0.00604536	0.00244075	0.0700813	0.0445752
chr8	25441657	25441754	3926176	0	-	0.371134	(0.35,0.378]	chr8	359437	6	INTRON	INTRON	KCTD9	ENSG00000104756.16	ENST00000221200.9:ENST00000519665.5:ENST00000523140.5:ENST00000522493.5:ENST00000518067.5:ENST00000518997.5:ENST00000523294.5:ENST00000521458.5:ENST00000524217.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	67	2	2.53856	3.25448	3.9704	0.0326077	1.01653e-4	0.133687	0.00850967
chr5	55330397	55330496	2355315	0	+	0.262626	[0,0.28]	chr5	227152	11	INTRON	INTRON	MTREX	ENSG00000039123.16	ENST00000230640.10:ENST00000506750.5:ENST00000504997.1:ENST00000505565.5:ENST00000502953.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	110	2	2.93306	3.25446	3.57586	0.00187793	0.00180892	0.039365700000000003	0.039073
chr3	101681949	101682041	1758893	0	-	0.347826	(0.32,0.35]	chr3	178423	9	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	RPL24	ENSG00000114391.13	ENST00000394077.8:ENST00000464595.1:ENST00000495401.5:ENST00000488288.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	61	2	1.57443	3.25434	4.93425	0.048436	0.00281048	0.153635	0.0488779
chr1	228457817	228457873	652242	0	-	0.428571	(0.408,0.44]	chr1	77223	1	UTR5	UTR5:EXON_MRNA	H2AW	ENSG00000181218.6	ENST00000691624.1:ENST00000366695.3:ENST00000689584.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	14	319	2	3.06729	3.25433	3.44137	3.3545e-6	1.58839e-6	0.00130302	7.58752e-4
chr1	151433537	151433637	554699	0	-	0.41	(0.408,0.44]	chr1	65538	23	INTRON	INTRON	POGZ	ENSG00000143442.22	ENST00000271715.7:ENST00000358476.7:ENST00000392723.5:ENST00000368863.6:ENST00000409503.5:ENST00000531094.5:ENST00000491586.5:ENST00000485040.5:ENST00000467287.5:ENST00000533461.5:ENST00000533351.5:ENST00000450842.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	48	2	1.55035	3.25426	4.95817	0.0455214	0.00372419	0.164236	0.0535094
chr2	68234310	68234410	1146342	0	-	0.48	(0.476,0.515]	chr2	122396	168	INTRON	INTRON	PPP3R1	ENSG00000221823.11	ENST00000234310.8:ENST00000409752.5:ENST00000409377.1	protein_coding	protein_coding	protein_coding	protein_coding	3	79	2	2.365	3.254095	4.14319	0.0128901	3.39012e-5	0.0926667	0.0046443
chr16	24002572	24002672	6325428	0	+	0.52	(0.515,0.57]	chr16	605711	136	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000498739.1:ENST00000647422.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	67	2	3.20141	3.25403	3.30665	0.00213226	2.65803e-4	0.041756	0.0144243
chr16	88729633	88729732	6539634	0	-	0.585859	(0.57,1]	chr16	633912	16	INTRON	INTRON	PIEZO1	ENSG00000103335.22	ENST00000301015.14	protein_coding	protein_coding	protein_coding	protein_coding	8	101	2	3.01971	3.253945	3.48818	3.02803e-5	7.21041e-7	0.00456454	4.73996e-4
chr9	33844763	33844863	4110501	0	+	0.5	(0.476,0.515]	chr9	374686	138	INTRON	INTRON	UBE2R2	ENSG00000107341.5	ENST00000263228.4	protein_coding	protein_coding	protein_coding	protein_coding	4	48	2	1.53534	3.253935	4.97253	0.0476737	0.00311573	0.170116	0.0498063
chr6	4026262	4026362	2789747	0	+	0.48	(0.476,0.515]	chr6	263481	44	INTRON	INTRON	PRPF4B	ENSG00000112739.17	ENST00000480058.5:ENST00000337659.11	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	59	2	3.01197	3.25392	3.49587	0.00633162	0.00120011	0.0722266	0.0315806
chr18	9361669	9361769	6870713	0	+	0.4	(0.378,0.408]	chr18	680672	12	INTRON	INTRON	TWSG1	ENSG00000128791.12	ENST00000583147.5:ENST00000262120.10:ENST00000581641.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	49	2	1.5653	3.2539	4.9425	0.043739	0.00452675	0.162255	0.0595107
chr4	2507983	2508082	1912223	0	+	0.545455	(0.515,0.57]	chr4	191953	69	INTRON	INTRON	RNF4	ENSG00000063978.16	ENST00000541204.5:ENST00000502316.5:ENST00000509388.5:ENST00000507247.5:ENST00000314289.13:ENST00000511843.5:ENST00000509258.5:ENST00000513284.5:ENST00000511859.5:ENST00000513643.5:ENST00000506706.5:ENST00000511600.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	106	2	2.95293	3.2538	3.55467	2.71022e-4	3.43577e-5	0.0150944	0.0046762
chr2	130133755	130133853	863610	0	+	0.540816	(0.515,0.57]	chr2	96903	36	INTRON	INTRON	MED15P9	ENSG00000223760.4	ENST00000427638.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	1	26	2	2.60899	3.253775	3.89856	0.0280943	0.0232669	0.137011	0.118148
chr20	63702512	63702610	7363553	0	-	0.55102	(0.515,0.57]	chr20	751397	4	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	ARFRP1	ENSG00000101246.20	ENST00000612256.4:ENST00000614942.4:ENST00000619493.4:ENST00000622789.5:ENST00000618838.4:ENST00000612157.4:ENST00000618568.4:ENST00000610774.1:ENST00000607873.1:ENST00000609537.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	26	2	2.60899	3.253775	3.89856	0.0280943	0.0232669	0.137011	0.118148
chr22	21586164	21586264	7481889	0	+	0.52	(0.515,0.57]	chr22	763232	174	INTRON	INTRON	UBE2L3	ENSG00000185651.16	ENST00000458578.6:ENST00000545681.2:ENST00000696046.1:ENST00000342192.9:ENST00000496722.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	26	2	2.60899	3.253775	3.89856	0.0280943	0.0232669	0.137011	0.118148
chr5	179772228	179772325	2561441	0	+	0.536082	(0.515,0.57]	chr5	244983	6	INTRON	INTRON	MAML1	ENSG00000161021.13	ENST00000292599.4:ENST00000507385.1:ENST00000511027.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	26	2	2.60899	3.253775	3.89856	0.0280943	0.0232669	0.137011	0.118148
chr7	103136179	103136279	3592766	0	-	0.55	(0.515,0.57]	chr7	335302	70	INTRON	INTRON	NAPEPLD	ENSG00000161048.12	ENST00000341533.8:ENST00000465647.6:ENST00000417955.5:ENST00000422589.5:ENST00000427257.5:ENST00000418294.1:ENST00000479761.1:ENST00000425379.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	26	2	2.60899	3.253775	3.89856	0.0280943	0.0232669	0.137011	0.118148
chr8	42859086	42859184	3942762	0	-	0.530612	(0.515,0.57]	chr8	361381	23	INTRON	INTRON	RNF170	ENSG00000120925.16	ENST00000319104.7:ENST00000534961.5:ENST00000527424.6:ENST00000240159.8:ENST00000526349.5:ENST00000319073.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	67	2	2.73258	3.25374	3.7749	0.00260192	2.59829e-4	0.0470772	0.0148796
chr6	143181572	143181672	2976395	0	+	0.2	[0,0.28]	chr6	279149	160	INTRON	INTRON	AIG1	ENSG00000146416.19	ENST00000367601.8:ENST00000447498.5:ENST00000646199.1:ENST00000357847.9:ENST00000629020.2:ENST00000275235.8:ENST00000494282.6:ENST00000458219.1:ENST00000470265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	39	2	2.54624	3.25373	3.96122	0.0617993	0.0388449	0.193423	0.143072
chr7	105497443	105497543	3604610	0	-	0.23	[0,0.28]	chr7	336252	18	INTRON	INTRON	PUS7	ENSG00000091127.14	ENST00000481939.5:ENST00000469408.6:ENST00000356362.6:ENST00000482157.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	39	2	2.54624	3.25373	3.96122	0.0617993	0.0388449	0.193423	0.143072
chr17	61779370	61779469	6808080	0	-	0.424242	(0.408,0.44]	chr17	672552	7	EXON_MRNA	EXON_MRNA:INTRON	BRIP1	ENSG00000136492.10	ENST00000259008.7:ENST00000682755.1:ENST00000682453.1:ENST00000683039.1:ENST00000682989.1:ENST00000682589.1:ENST00000683235.1:ENST00000682477.1:ENST00000684584.1:ENST00000682073.1:ENST00000577598.5:ENST00000684471.1:ENST00000682066.1:ENST00000584322.2:ENST00000683381.1:ENST00000579028.2:ENST00000583837.5:ENST00000682611.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	77	2	3.01942	3.2536750000000003	3.48793	0.00130904	7.74413e-4	0.0331539	0.0256083
chr1	91819329	91819429	503951	0	-	0.51	(0.476,0.515]	chr1	59635	179	INTRON	INTRON	TGFBR3	ENSG00000069702.11	ENST00000212355.9:ENST00000533089.5:ENST00000370399.6:ENST00000525962.5:ENST00000532540.5:ENST00000465892.6:ENST00000417833.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	28	2	2.40608	3.2536050000000003	4.10113	0.0425709	0.0226984	0.148082	0.124921
chr13	113486592	113486692	5652793	0	-	0.49	(0.476,0.515]	chr13	538723	20	INTRON	INTRON	DCUN1D2	ENSG00000150401.15	ENST00000478244.6:ENST00000332592.7:ENST00000375403.6:ENST00000438545.6:ENST00000496873.1:ENST00000439909.2:ENST00000465710.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	28	2	2.40608	3.2536050000000003	4.10113	0.0425709	0.0226984	0.148082	0.124921
chr16	4722849	4722949	6438141	0	-	0.49	(0.476,0.515]	chr16	619996	49	INTRON	INTRON	ANKS3	ENSG00000168096.15	ENST00000450067.6:ENST00000614075.4:ENST00000304283.9:ENST00000592077.5:ENST00000590193.5:ENST00000446014.6:ENST00000591653.5:ENST00000590803.5:ENST00000585773.5:ENST00000590730.5:ENST00000586605.5:ENST00000592421.5:ENST00000592068.5:ENST00000586166.5:ENST00000592698.5:ENST00000586159.5:ENST00000586632.1:ENST00000589065.5:ENST00000593120.5:ENST00000592711.5:ENST00000591281.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	28	2	2.40608	3.2536050000000003	4.10113	0.0425709	0.0226984	0.148082	0.124921
chr19	36220983	36221083	7057483	0	+	0.5	(0.476,0.515]	chr19	704664	24	INTRON	INTRON	ZNF146	ENSG00000167635.12	ENST00000456324.5:ENST00000591063.5:ENST00000443387.3:ENST00000586094.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	28	2	2.40608	3.2536050000000003	4.10113	0.0425709	0.0226984	0.148082	0.124921
chr20	49640865	49640965	7352891	0	-	0.49	(0.476,0.515]	chr20	749821	2	SS3_PROX	SS3_PROX:INTRON	B4GALT5	ENSG00000158470.5	ENST00000371711.4	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	2.40608	3.2536050000000003	4.10113	0.0425709	0.0226984	0.148082	0.124921
chr3	67482002	67482102	1732219	0	-	0.5	(0.476,0.515]	chr3	176554	726	INTRON	INTRON	SUCLG2	ENSG00000172340.15	ENST00000493112.5:ENST00000307227.10:ENST00000460567.5:ENST00000492795.1	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	2.40608	3.2536050000000003	4.10113	0.0425709	0.0226984	0.148082	0.124921
chr6	26284239	26284337	3071130	0	-	0.510204	(0.476,0.515]	chr6	285471	23	INTRON	INTRON	H4C8	ENSG00000158406.6	ENST00000634956.1:ENST00000634560.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	1	28	2	2.40608	3.2536050000000003	4.10113	0.0425709	0.0226984	0.148082	0.124921
chr7	116880547	116880647	3385544	0	+	0.49	(0.476,0.515]	chr7	317041	4	SS5_PROX	SS5_PROX:INTRON	CAPZA2	ENSG00000198898.15	ENST00000464223.5:ENST00000484325.1:ENST00000414148.6:ENST00000361183.8:ENST00000449080.5:ENST00000426421.5:ENST00000490693.5:ENST00000417431.5:ENST00000461878.5:ENST00000464669.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	28	2	2.40608	3.2536050000000003	4.10113	0.0425709	0.0226984	0.148082	0.124921
chr7	141746149	141746243	3440180	0	+	0.478723	(0.476,0.515]	chr7	320694	7	EXON_MRNA	EXON_MRNA:INTRON	SSBP1	ENSG00000106028.11	ENST00000612337.4:ENST00000265304.11:ENST00000498107.5:ENST00000489378.5:ENST00000469123.5:ENST00000467681.5:ENST00000465582.5:ENST00000465167.1:ENST00000484178.5:ENST00000481508.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	9	214	2	2.89348	3.2535999999999996	3.61372	8.57887e-5	1.06398e-6	0.0083052	5.91037e-4
chr15	22582199	22582297	5975431	0	+	0.346939	(0.32,0.35]	chr15	568243	21	INTRON	INTRON	HERC2P2	ENSG00000276550.5	ENST00000619021.4:ENST00000690192.1:ENST00000614571.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	4	53	2	1.54741	3.2535600000000002	4.95971	0.0473733	0.00663522	0.169265	0.0703181
chr18	47146168	47146267	6967175	0	-	0.424242	(0.408,0.44]	chr18	689609	85	INTRON	INTRON	HDHD2:ENSG00000267228	ENSG00000167220.12:ENSG00000267228.7	ENST00000588183.5:ENST00000300605.11:ENST00000602459.6:ENST00000587841.5:ENST00000590815.5:ENST00000591480.5:ENST00000586546.5:ENST00000590481.5:ENST00000588940.5:ENST00000587388.5:ENST00000591268.1:ENST00000592591.1:ENST00000591671.1:ENST00000588705.1:ENST00000602926.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	172	2	3.07285	3.25354	3.43423	7.41489e-5	1.43682e-5	0.00770735	0.00284044
chr1	246116804	246116904	676800	0	-	0.31	(0.28,0.32]	chr1	79721	205	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000391836.3:ENST00000453676.5:ENST00000462422.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	72	2	2.96187	3.2535049999999996	3.54514	0.0114995	0.00100603	0.0889104	0.0292285
chr10	5776841	5776941	4544549	0	-	0.33	(0.32,0.35]	chr10	419772	25	INTRON	INTRON	GDI2	ENSG00000057608.17	ENST00000380191.9:ENST00000447751.5:ENST00000380181.7:ENST00000456041.5	protein_coding	protein_coding	protein_coding	protein_coding	2	39	2	2.13945	3.2535	4.36755	0.0300552	0.0254517	0.133676	0.129138
chr8	17958655	17958751	3708102	0	+	0.333333	(0.32,0.35]	chr8	343890	5	INTRON	INTRON	PCM1	ENSG00000078674.19	ENST00000325083.13:ENST00000517730.5:ENST00000519253.5:ENST00000524226.5:ENST00000517836.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	39	2	2.13945	3.2535	4.36755	0.0300552	0.0254517	0.133676	0.129138
chr4	26430144	26430235	1937794	0	+	0.32967	(0.32,0.35]	chr4	194461	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RBPJ	ENSG00000168214.22	ENST00000681799.1:ENST00000681403.1:ENST00000342295.6:ENST00000512671.6:ENST00000345843.8:ENST00000361572.10:ENST00000514380.5:ENST00000348160.9:ENST00000681506.1:ENST00000509158.6:ENST00000691085.1:ENST00000692303.1:ENST00000681856.1:ENST00000681025.1:ENST00000681679.1:ENST00000680210.1:ENST00000355476.8:ENST00000680140.1:ENST00000680511.1:ENST00000510778.7:ENST00000679698.1:ENST00000679469.1:ENST00000681484.1:ENST00000505958.6:ENST00000507561.5:ENST00000689192.1:ENST00000680928.1:ENST00000681260.1:ENST00000681093.1:ENST00000504423.2:ENST00000342320.8:ENST00000504907.5:ENST00000681264.1:ENST00000515023.6:ENST00000510725.1:ENST00000505727.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	46	2	1.67393	3.2534	4.83287	0.0496128	0.0095071	0.174685	0.0817766
chr11	57688865	57688965	4792483	0	+	0.36	(0.35,0.378]	chr11	443608	2	SS5_PROX	SS5_PROX:INTRON	ZDHHC5	ENSG00000156599.11	ENST00000527985.5:ENST00000528177.5:ENST00000287169.8:ENST00000532842.1:ENST00000529480.1:ENST00000529447.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	65	2	2.66547	3.253335	3.8412	0.0233639	1.97447e-4	0.118323	0.0122531
chr21	33523159	33523253	7441191	0	-	0.319149	(0.28,0.32]	chr21	759441	5	INTRON	INTRON	GART	ENSG00000159131.17	ENST00000381839.7:ENST00000381831.7:ENST00000424203.5:ENST00000381815.9:ENST00000460305.1:ENST00000467575.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	56	2	1.51776	3.25324	4.98872	0.0528371	0.00838468	0.178899	0.0774402
chr3	23829397	23829497	1387964	0	+	0.51	(0.476,0.515]	chr3	145385	175	INTRON	INTRON	UBE2E1	ENSG00000170142.12	ENST00000306627.8:ENST00000346855.7:ENST00000495141.5:ENST00000442670.5:ENST00000424381.5:ENST00000467766.5:ENST00000475680.5:ENST00000452012.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	77	2	2.84068	3.253165	3.66565	0.00217133	4.18031e-4	0.0417893	0.0182827
chr6	20550098	20550197	2828539	0	+	0.494949	(0.476,0.515]	chr6	265644	10	INTRON	INTRON	CDKAL1	ENSG00000145996.11	ENST00000274695.8:ENST00000613575.4:ENST00000378610.1	protein_coding	protein_coding	protein_coding	protein_coding	2	35	2	2.06491	3.253095	4.44128	0.0304733	0.0151924	0.143385	0.0994339
chrX	123867241	123867341	7716258	0	+	0.5	(0.476,0.515]	chrX	789403	63	INTRON	INTRON	XIAP	ENSG00000101966.13	ENST00000422098.5:ENST00000481776.5:ENST00000434753.7:ENST00000497906.5:ENST00000468691.5:ENST00000430625.1:ENST00000371199.8:ENST00000497640.1:ENST00000355640.3:ENST00000468503.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	35	2	2.06491	3.253095	4.44128	0.0304733	0.0151924	0.143385	0.0994339
chrX	129590668	129590768	7721957	0	+	0.51	(0.476,0.515]	chrX	789828	5	UTR3	UTR3:EXON_MRNA	OCRL	ENSG00000122126.18	ENST00000371113.9:ENST00000357121.5:ENST00000693473.1:ENST00000646010.1:ENST00000647245.1:ENST00000646914.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	35	2	2.06491	3.253095	4.44128	0.0304733	0.0151924	0.143385	0.0994339
chr3	154305585	154305668	1843344	0	-	0.53012	(0.515,0.57]	chr3	185443	4	SS3_PROX	SS3_PROX:INTRON	DHX36	ENSG00000174953.14	ENST00000496811.6:ENST00000308361.10:ENST00000329463.9:ENST00000481941.5	protein_coding	protein_coding	protein_coding	protein_coding	7	134	2	2.88931	3.253025	3.61674	4.0766e-5	3.351e-5	0.00519155	0.00488123
chr6	161056150	161056250	3025139	0	+	0.38	(0.378,0.408]	chr6	282325	58	INTRON	INTRON	MAP3K4	ENSG00000085511.20	ENST00000366919.6:ENST00000392142.9:ENST00000542952.5:ENST00000366920.6:ENST00000348824.11:ENST00000544041.5:ENST00000490904.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	109	2	2.62441	3.2529700000000004	3.88153	5.61983e-4	2.49905e-4	0.0216479	0.0146029
chr1	25448870	25448934	48128	0	+	0.453125	(0.44,0.476]	chr1	5928	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	MACO1	ENSG00000204178.11	ENST00000399766.7:ENST00000374343.5:ENST00000647928.1:ENST00000470035.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	140	2	2.47133	3.2529500000000002	4.03457	2.17467e-4	1.03446e-4	0.0129301	0.00915599
chr10	125093904	125094004	4713669	0	-	0.4	(0.378,0.408]	chr10	434903	52	INTRON	INTRON	CTBP2	ENSG00000175029.17	ENST00000337195.9:ENST00000411419.6:ENST00000494626.6:ENST00000531469.5:ENST00000460976.5:ENST00000476817.1:ENST00000530884.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	80	2	2.82967	3.25288	3.67609	0.00189968	6.32264e-4	0.0402736	0.0231174
chr19	1590696	1590794	7112504	0	-	0.408163	(0.378,0.408]	chr19	714541	45	INTRON	INTRON	MBD3:ENSG00000267059	ENSG00000071655.18:ENSG00000267059.2	ENST00000434436.8:ENST00000156825.5:ENST00000585937.1:ENST00000585967.5:ENST00000592965.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	80	2	2.82967	3.25288	3.67609	0.00189968	6.32264e-4	0.0402736	0.0231174
chr5	10433684	10433782	2318482	0	+	0.408163	(0.378,0.408]	chr5	224765	1	UTR3	UTR3:EXON_MRNA	MARCHF6	ENSG00000145495.16	ENST00000274140.10:ENST00000449913.6:ENST00000511802.5:ENST00000503788.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	17	382	2	3.00755	3.2528550000000003	3.49816	2.8043e-6	1.01194e-6	0.00118687	5.75144e-4
chr1	213015025	213015125	635091	0	-	0.3	(0.28,0.32]	chr1	75039	4	SS5_PROX	SS5_PROX:INTRON	ANGEL2	ENSG00000174606.14	ENST00000366962.8:ENST00000360506.6:ENST00000535388.2:ENST00000481918.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	45	2	2.4721	3.252775	4.03345	0.0704058	0.00906617	0.184298	0.0854289
chr10	125113984	125114084	4713872	0	-	0.48	(0.476,0.515]	chr10	434913	25	INTRON	INTRON	CTBP2	ENSG00000175029.17	ENST00000337195.9:ENST00000411419.6:ENST00000494626.6:ENST00000531469.5:ENST00000460976.5:ENST00000476817.1:ENST00000530884.1:ENST00000530930.1:ENST00000467395.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	36	2	2.26034	3.252675	4.24501	0.0247713	0.0166235	0.12011	0.110511
chr15	72696903	72697001	6060578	0	+	0.489796	(0.476,0.515]	chr15	576954	13	INTRON	INTRON	BBS4	ENSG00000140463.14	ENST00000395205.6:ENST00000566400.5:ENST00000565160.5:ENST00000561914.5:ENST00000268057.9:ENST00000567279.5:ENST00000566938.5:ENST00000569440.5:ENST00000563600.5:ENST00000562084.5:ENST00000569338.5:ENST00000566829.1:ENST00000564239.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	36	2	2.26034	3.252675	4.24501	0.0247713	0.0166235	0.12011	0.110511
chr17	28595165	28595265	6744624	0	-	0.49	(0.476,0.515]	chr17	662460	17	INTRON	INTRON	SPAG5	ENSG00000076382.17	ENST00000321765.10:ENST00000578479.1:ENST00000580567.6:ENST00000536674.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	36	2	2.26034	3.252675	4.24501	0.0247713	0.0166235	0.12011	0.110511
chr3	25628254	25628346	1641782	0	-	0.478261	(0.476,0.515]	chr3	168523	6	INTRON	INTRON	TOP2B	ENSG00000077097.16	ENST00000264331.9:ENST00000435706.6:ENST00000424225.1:ENST00000491510.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	36	2	2.26034	3.252675	4.24501	0.0247713	0.0166235	0.12011	0.110511
chr17	82747374	82747472	6694150	0	+	0.428571	(0.408,0.44]	chr17	654788	18	INTRON	INTRON	FN3K	ENSG00000167363.14	ENST00000300784.8:ENST00000570734.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	58	2	3.2451	3.25229	3.25948	0.00337792	0.00246454	0.0516884	0.0459102
chr7	151234460	151234547	3448990	0	+	0.436782	(0.408,0.44]	chr7	322286	2	SS5_PROX	SS5_PROX:INTRON	CHPF2	ENSG00000033100.17	ENST00000035307.7:ENST00000495645.5:ENST00000482173.6:ENST00000691224.1:ENST00000685322.1:ENST00000692651.1:ENST00000690577.1:ENST00000690444.1:ENST00000689322.1:ENST00000465601.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	58	2	3.2451	3.25229	3.25948	0.00337792	0.00246454	0.0516884	0.0459102
chr6	159789128	159789215	3254702	0	-	0.735632	(0.57,1]	chr6	302553	4	EXON_LNCRNA	EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TCP1	ENSG00000120438.12	ENST00000321394.12:ENST00000544255.5:ENST00000420894.6:ENST00000392168.6:ENST00000539756.1:ENST00000543532.5:ENST00000538530.5:ENST00000538128.5:ENST00000543517.5:ENST00000537390.5:ENST00000536607.1:ENST00000546023.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	66	2	3.14704	3.2522	3.35736	8.14057e-5	4.92991e-5	0.00755207	0.00608708
chr8	43021673	43021772	3745531	0	+	0.575758	(0.57,1]	chr8	348501	33	UTR3	UTR3:EXON_MRNA:INTRON	HOOK3	ENSG00000168172.9	ENST00000307602.9:ENST00000533338.1	protein_coding	protein_coding	protein_coding	protein_coding	5	66	2	3.14704	3.2522	3.35736	8.14057e-5	4.92991e-5	0.00755207	0.00608708
chr1	47334316	47334416	97579	0	+	0.58	(0.57,1]	chr1	13137	2	SS5_PROX	SS5_PROX:INTRON	CMPK1	ENSG00000162368.14	ENST00000371873.10:ENST00000371871.8:ENST00000471289.2:ENST00000450808.2:ENST00000371870.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	33	2	1.94024	3.251945	4.56365	0.0116325	0.00129848	0.0889284	0.0333764
chr6	32162167	32162267	2844532	0	+	0.43	(0.408,0.44]	chr6	268244	2	SS3_PROX	SS3_PROX:INTRON	PPT2:PPT2-EGFL8	ENSG00000221988.13:ENSG00000258388.7	ENST00000361568.6:ENST00000395523.5:ENST00000428388.6:ENST00000585246.5:ENST00000375137.6:ENST00000375143.6:ENST00000324816.11:ENST00000493548.5:ENST00000422437.5:ENST00000453656.6:ENST00000583227.5:ENST00000479001.2:ENST00000421600.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	38	2	2.49983	3.25184	4.00385	0.0454568	0.00713527	0.149888	0.0756118
chr12	56603258	56603358	5335355	0	-	0.34	(0.32,0.35]	chr12	510006	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	BAZ2A	ENSG00000076108.12	ENST00000379441.7:ENST00000549884.6:ENST00000551812.5:ENST00000549787.5	protein_coding	protein_coding	protein_coding	protein_coding	2	38	2	1.88468	3.251785	4.61889	0.0515071	0.0166646	0.176696	0.102621
chr19	11100578	11100667	7016926	0	+	0.348315	(0.32,0.35]	chr19	697427	1	SS5_PROX	SS5_PROX:INTRON	LDLR	ENSG00000130164.14	ENST00000557933.5:ENST00000558518.6:ENST00000545707.5:ENST00000535915.5:ENST00000455727.6:ENST00000557958.1:ENST00000558013.5:ENST00000252444.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	38	2	1.88468	3.251785	4.61889	0.0515071	0.0166646	0.176696	0.102621
chr3	5140161	5140261	1353754	0	+	0.49	(0.476,0.515]	chr3	142361	112	INTRON	INTRON	ARL8B	ENSG00000134108.14	ENST00000429403.5:ENST00000256496.8:ENST00000455168.5:ENST00000444332.1:ENST00000419534.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	38	2	2.48551	3.25164	4.01777	0.0411361	0.00756632	0.1451	0.0773151
chrX	44896185	44896285	7648832	0	+	0.48	(0.476,0.515]	chrX	782726	218	INTRON	INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000675440.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000621147.5:ENST00000475233.1:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	38	2	2.48551	3.25164	4.01777	0.0411361	0.00756632	0.1451	0.0773151
chr2	112646229	112646306	852059	0	+	0.766234	(0.57,1]	chr2	95558	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SLC20A1	ENSG00000144136.11	ENST00000272542.8	protein_coding	protein_coding	protein_coding	protein_coding	4	31	2	1.79898	3.251625	4.70427	0.0206524	9.25341e-4	0.122348	0.0278396
chr5	134788903	134788997	2490695	0	+	0.319149	(0.28,0.32]	chr5	237942	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DDX46	ENSG00000145833.16	ENST00000628477.2:ENST00000452510.7:ENST00000507392.5:ENST00000354283.8:ENST00000513592.5:ENST00000509178.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	63	2	1.45717	3.25148	5.04579	0.0472947	0.00714672	0.16913	0.0723634
chr22	20469962	20470061	7557259	0	-	0.333333	(0.32,0.35]	chr22	772780	40	INTRON	INTRON	KLHL22	ENSG00000099910.17	ENST00000328879.9:ENST00000479601.5:ENST00000451553.1:ENST00000444967.5:ENST00000458248.5:ENST00000443285.5:ENST00000494929.5:ENST00000431430.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	31	2	2.23182	3.251475	4.27113	0.068598	0.0199982	0.184298	0.120668
chr3	48978397	48978494	1422076	0	+	0.340206	(0.32,0.35]	chr3	149556	31	INTRON	INTRON	ARIH2	ENSG00000177479.20	ENST00000449376.5:ENST00000490095.5:ENST00000356401.9:ENST00000452385.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	31	2	2.23182	3.251475	4.27113	0.068598	0.0199982	0.184298	0.120668
chr4	67468761	67468859	2152727	0	-	0.326531	(0.32,0.35]	chr4	211903	1	UTR3	UTR3:EXON_MRNA	CENPC	ENSG00000145241.11	ENST00000273853.11	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	2.23182	3.251475	4.27113	0.068598	0.0199982	0.184298	0.120668
chr19	19427794	19427893	7035568	0	+	0.393939	(0.378,0.408]	chr19	701436	2	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	GATAD2A	ENSG00000167491.18	ENST00000494516.6:ENST00000360315.7:ENST00000609040.5:ENST00000417582.6:ENST00000683918.1:ENST00000448576.6:ENST00000432704.5:ENST00000404158.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	48	2	1.73164	3.2513449999999997	4.77105	0.0441773	0.00330823	0.149888	0.0527031
chr14	103464956	103465056	5826442	0	+	0.51	(0.476,0.515]	chr14	552873	21	INTRON	INTRON	MARK3	ENSG00000075413.19	ENST00000678179.1:ENST00000676838.1:ENST00000677348.1:ENST00000677404.1:ENST00000676694.1:ENST00000676938.1:ENST00000678619.1:ENST00000676897.1:ENST00000677214.1:ENST00000677942.1:ENST00000676830.1:ENST00000678999.1:ENST00000677228.1:ENST00000556744.2:ENST00000677104.1:ENST00000679330.1:ENST00000560417.6:ENST00000440884.7:ENST00000676475.1:ENST00000677035.1:ENST00000678022.1:ENST00000677560.1:ENST00000561314.6:ENST00000429436.7:ENST00000677118.1:ENST00000676564.1:ENST00000678169.1:ENST00000678175.1:ENST00000678897.1:ENST00000678278.1:ENST00000676645.1:ENST00000677829.1:ENST00000678302.1:ENST00000677133.1:ENST00000561164.2:ENST00000558223.6:ENST00000678207.1:ENST00000677360.1:ENST00000676905.1:ENST00000678343.1:ENST00000677347.1:ENST00000678071.1:ENST00000677432.1:ENST00000678237.1:ENST00000677604.1:ENST00000676518.1:ENST00000677051.1:ENST00000677857.1:ENST00000677869.1:ENST00000678423.1:ENST00000560603.6:ENST00000416682.6:ENST00000303622.13:ENST00000216288.11:ENST00000679105.1:ENST00000553942.5:ENST00000335102.9:ENST00000678091.1:ENST00000561071.5:ENST00000558698.5:ENST00000559268.5:ENST00000676745.1:ENST00000558611.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	57	2	3.10264	3.251335	3.40003	0.00543163	0.00139193	0.0645052	0.0341261
chr2	3475196	3475296	686723	0	+	0.49	(0.476,0.515]	chr2	80557	22	INTRON	INTRON	TRAPPC12	ENSG00000171853.16	ENST00000382110.6:ENST00000324266.10:ENST00000417243.5:ENST00000433382.5:ENST00000415624.5:ENST00000497597.5:ENST00000473348.5:ENST00000461577.5:ENST00000489032.5:ENST00000437733.5:ENST00000416918.5:ENST00000469400.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	57	2	3.10264	3.251335	3.40003	0.00543163	0.00139193	0.0645052	0.0341261
chr1	204556730	204556829	297836	0	+	0.313131	(0.28,0.32]	chr1	34331	72	UTR3	UTR3:EXON_MRNA	MDM4	ENSG00000198625.14	ENST00000367183.7:ENST00000391947.6:ENST00000454264.6:ENST00000612738.4:ENST00000614459.4:ENST00000616250.4:ENST00000367182.8	protein_coding	protein_coding	protein_coding	protein_coding	15	445	2	3.10022	3.25125	3.40228	7.89281e-6	3.5559e-6	0.00212728	0.00122796
chr21	45527923	45528021	7469741	0	-	0.285714	(0.28,0.32]	chr21	761358	16	INTRON	INTRON	SLC19A1	ENSG00000173638.19	ENST00000417954.5:ENST00000567670.5:ENST00000311124.9:ENST00000650808.1:ENST00000380010.8:ENST00000485649.3	protein_coding	protein_coding	protein_coding	protein_coding	3	99	2	2.92142	3.25121	3.581	0.00234443	8.63544e-4	0.0434875	0.0266494
chr8	17946487	17946586	3707972	0	+	0.464646	(0.44,0.476]	chr8	343851	60	INTRON	INTRON	PCM1	ENSG00000078674.19	ENST00000518930.1:ENST00000325083.13:ENST00000517730.5:ENST00000518537.5:ENST00000523055.5:ENST00000519253.5:ENST00000524226.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	104	2	2.848	3.251115	3.65423	0.00215274	2.41976e-5	0.0417866	0.00385018
chr15	75363753	75363834	6223160	0	-	0.444444	(0.44,0.476]	chr15	594358	1	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MAN2C1	ENSG00000140400.18	ENST00000267978.10:ENST00000563622.5:ENST00000565683.5:ENST00000569482.5:ENST00000563441.5:ENST00000566634.5:ENST00000421803.6:ENST00000570257.6:ENST00000565784.5:ENST00000563539.5:ENST00000565699.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	148	2	3.18837	3.25089	3.31341	1.07866e-4	3.0973e-5	0.00931098	0.00443703
chr17	82898367	82898466	6695698	0	+	0.626263	(0.57,1]	chr17	654985	20	INTRON	INTRON	TBCD	ENSG00000141556.22	ENST00000682479.1:ENST00000682722.1:ENST00000684464.1:ENST00000684544.1:ENST00000681983.1:ENST00000684361.1:ENST00000683184.1:ENST00000683282.1:ENST00000684408.1:ENST00000355528.9:ENST00000683444.1:ENST00000684776.1:ENST00000683041.1:ENST00000684760.1:ENST00000684349.1:ENST00000682213.1:ENST00000683009.1:ENST00000682921.1:ENST00000539345.6:ENST00000684000.1:ENST00000684188.1:ENST00000684429.1:ENST00000682610.1:ENST00000683821.1:ENST00000682654.1:ENST00000576160.6:ENST00000571712.5:ENST00000576996.5:ENST00000574801.5:ENST00000683584.1:ENST00000682099.1:ENST00000684559.1:ENST00000571316.5:ENST00000576760.5:ENST00000572984.5:ENST00000683839.1:ENST00000574975.5:ENST00000572953.5:ENST00000571796.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	24	2	2.33295	3.2508799999999995	4.16881	0.0122896	0.00574776	0.091087	0.0681402
chr18	12719717	12719814	6876078	0	+	0.525773	(0.515,0.57]	chr18	681242	7	INTRON	INTRON	PSMG2	ENSG00000128789.21	ENST00000585331.6:ENST00000586445.5:ENST00000590217.5:ENST00000586587.1:ENST00000317615.11	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	32	2	2.1885	3.2508799999999995	4.31326	0.0202537	0.0141817	0.121364	0.0959618
chr6	13662927	13663027	3058736	0	-	0.36	(0.35,0.378]	chr6	284542	37	INTRON	INTRON	RANBP9	ENSG00000010017.13	ENST00000011619.6	protein_coding	protein_coding	protein_coding	protein_coding	2	37	2	2.10859	3.2508100000000004	4.39303	0.0272722	0.0237246	0.136494	0.118716
chr19	32642833	32642927	7169290	0	-	0.617021	(0.57,1]	chr19	724438	3	SS5_PROX	SS5_PROX:INTRON	ANKRD27	ENSG00000105186.16	ENST00000306065.9:ENST00000591100.6:ENST00000587352.5	protein_coding	protein_coding	protein_coding	protein_coding	2	32	2	3.183	3.250795	3.31859	0.00254356	0.00137292	0.0448135	0.0340241
chr22	35197617	35197717	7580735	0	-	0.46	(0.44,0.476]	chr22	775774	22	INTRON	INTRON	LINC01399	ENSG00000233080.3	ENST00000423311.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	3	42	2	1.81595	3.250795	4.68564	0.0317953	0.00816201	0.14477	0.0766625
chr5	43066786	43066886	2614154	0	-	0.59	(0.57,1]	chr5	248472	3	SS5_PROX	SS5_PROX:INTRON	ENSG00000177738	ENSG00000177738.5	ENST00000503152.2:ENST00000665537.1	lncRNA	lncRNA	lncRNA	lncRNA	2	32	2	3.183	3.250795	3.31859	0.00254356	0.00137292	0.0448135	0.0340241
chr1	28738738	28738838	58361	0	+	0.36	(0.35,0.378]	chr1	7586	4	SS5_PROX	SS5_PROX:INTRON	YTHDF2	ENSG00000198492.16	ENST00000542507.5:ENST00000474884.5:ENST00000373812.8:ENST00000541996.5:ENST00000478283.5:ENST00000496288.5:ENST00000476976.1:ENST00000475796.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	68	2	2.47065	3.250775	4.0309	0.0386172	7.36864e-5	0.142656	0.00714826
chr16	89406956	89407056	6542758	0	-	0.46	(0.44,0.476]	chr16	634254	28	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000647238.1:ENST00000644045.1:ENST00000643147.1:ENST00000644139.1:ENST00000568512.6:ENST00000566973.1:ENST00000562211.2:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	26	2	2.49112	3.25075	4.01038	0.0433743	0.0315968	0.148082	0.144381
chr17	29095734	29095821	6746510	0	-	0.45977	(0.44,0.476]	chr17	663026	3	INTRON	INTRON	MYO18A	ENSG00000196535.19	ENST00000527372.7:ENST00000531253.5:ENST00000533112.5:ENST00000530254.6:ENST00000530557.2:ENST00000533652.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	26	2	2.49112	3.25075	4.01038	0.0433743	0.0315968	0.148082	0.144381
chr6	107028997	107029097	2931529	0	+	0.47	(0.44,0.476]	chr6	276186	2	SS5_PROX	SS5_PROX:INTRON	MTRES1	ENSG00000130349.10	ENST00000311381.8:ENST00000405204.6:ENST00000625458.1	protein_coding	protein_coding	protein_coding	protein_coding	1	26	2	2.49112	3.25075	4.01038	0.0433743	0.0315968	0.148082	0.144381
chr6	125202739	125202839	2953635	0	+	0.46	(0.44,0.476]	chr6	277761	479	INTRON	INTRON	TPD52L1	ENSG00000111907.21	ENST00000534368.5:ENST00000304877.17:ENST00000368402.9:ENST00000368388.6:ENST00000534000.6:ENST00000527711.5:ENST00000392483.6:ENST00000528193.5:ENST00000532429.5:ENST00000532978.5:ENST00000534199.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	26	2	2.49112	3.25075	4.01038	0.0433743	0.0315968	0.148082	0.144381
chr7	30149780	30149880	3300295	0	+	0.47	(0.44,0.476]	chr7	306458	31	INTRON	INTRON	MTURN	ENSG00000180354.16	ENST00000324453.13:ENST00000409688.1:ENST00000324489.5	protein_coding	protein_coding	protein_coding	protein_coding	1	26	2	2.49112	3.25075	4.01038	0.0433743	0.0315968	0.148082	0.144381
chr7	101824874	101824974	3366437	0	+	0.45	(0.44,0.476]	chr7	315215	55	INTRON	INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000497815.5:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000607092.1:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000558469.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	26	2	2.49112	3.25075	4.01038	0.0433743	0.0315968	0.148082	0.144381
chr7	129905918	129906018	3637500	0	-	0.46	(0.44,0.476]	chr7	338216	246	INTRON	INTRON	UBE2H	ENSG00000186591.13	ENST00000355621.8:ENST00000649897.1:ENST00000473814.6:ENST00000496698.5:ENST00000472396.5:ENST00000480245.5:ENST00000490974.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	26	2	2.49112	3.25075	4.01038	0.0433743	0.0315968	0.148082	0.144381
chr8	97827947	97828047	3810466	0	+	0.45	(0.44,0.476]	chr8	352938	24	INTRON	INTRON	LAPTM4B	ENSG00000104341.17	ENST00000445593.6:ENST00000619747.1:ENST00000521545.7	protein_coding	protein_coding	protein_coding	protein_coding	1	26	2	2.49112	3.25075	4.01038	0.0433743	0.0315968	0.148082	0.144381
chr9	107301353	107301443	4183559	0	+	0.444444	(0.44,0.476]	chr9	381549	8	INTRON	INTRON	RAD23B	ENSG00000119318.13	ENST00000419616.5:ENST00000358015.8:ENST00000416373.6:ENST00000442587.1	protein_coding	protein_coding	protein_coding	protein_coding	1	26	2	2.49112	3.25075	4.01038	0.0433743	0.0315968	0.148082	0.144381
chrX	41165471	41165571	7644877	0	+	0.45	(0.44,0.476]	chrX	782310	2	SS3_PROX	SS3_PROX:INTRON	USP9X	ENSG00000124486.14	ENST00000324545.9:ENST00000378308.7	protein_coding	protein_coding	protein_coding	protein_coding	1	26	2	2.49112	3.25075	4.01038	0.0433743	0.0315968	0.148082	0.144381
chrX	123865842	123865941	7716244	0	+	0.454545	(0.44,0.476]	chrX	789403	49	INTRON	INTRON	XIAP	ENSG00000101966.13	ENST00000422098.5:ENST00000481776.5:ENST00000434753.7:ENST00000497906.5:ENST00000468691.5:ENST00000430625.1:ENST00000371199.8:ENST00000497640.1:ENST00000355640.3:ENST00000468503.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	26	2	2.49112	3.25075	4.01038	0.0433743	0.0315968	0.148082	0.144381
chr11	68565812	68565910	4818402	0	+	0.418367	(0.408,0.44]	chr11	448983	10	INTRON	INTRON	PPP6R3	ENSG00000110075.15	ENST00000534534.5:ENST00000524845.5:ENST00000393800.7:ENST00000265637.8:ENST00000524904.5:ENST00000393801.7:ENST00000265636.9:ENST00000529710.5:ENST00000527403.6:ENST00000534190.5:ENST00000526574.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	28	2	2.27698	3.250725	4.22447	0.0583528	0.0161655	0.167723	0.109464
chr16	88620998	88621098	6418776	0	+	0.43	(0.408,0.44]	chr16	615832	91	INTRON	INTRON	ZC3H18	ENSG00000158545.16	ENST00000301011.10:ENST00000452588.6:ENST00000567085.1:ENST00000564161.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	28	2	2.27698	3.250725	4.22447	0.0583528	0.0161655	0.167723	0.109464
chr3	196749350	196749450	1595588	0	+	0.42	(0.408,0.44]	chr3	165300	88	INTRON	INTRON	PAK2	ENSG00000180370.10	ENST00000327134.7	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	2.27698	3.250725	4.22447	0.0583528	0.0161655	0.167723	0.109464
chr4	54053498	54053598	2148232	0	-	0.43	(0.408,0.44]	chr4	211322	38	INTRON	INTRON	CHIC2	ENSG00000109220.11	ENST00000263921.8:ENST00000512964.5:ENST00000510894.1:ENST00000509678.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	28	2	2.27698	3.250725	4.22447	0.0583528	0.0161655	0.167723	0.109464
chr5	12589113	12589213	2318725	0	+	0.42	(0.408,0.44]	chr5	224776	137	INTRON	INTRON	LINC01194	ENSG00000248131.6	ENST00000513051.6:ENST00000664069.1:ENST00000505196.1:ENST00000505877.5	lncRNA	lncRNA	lncRNA	lncRNA	1	28	2	2.27698	3.250725	4.22447	0.0583528	0.0161655	0.167723	0.109464
chr7	143307209	143307307	3441488	0	+	0.418367	(0.408,0.44]	chr7	320950	23	UTR3	UTR3:EXON_MRNA	CASP2	ENSG00000106144.20	ENST00000619992.4:ENST00000310447.10	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	2.27698	3.250725	4.22447	0.0583528	0.0161655	0.167723	0.109464
chr14	37200670	37200770	5695991	0	+	0.34	(0.32,0.35]	chr14	541575	20	INTRON	INTRON	MIPOL1	ENSG00000151338.20	ENST00000694961.1:ENST00000396294.6:ENST00000537471.6:ENST00000556615.5:ENST00000554114.2:ENST00000695502.1:ENST00000695405.1:ENST00000695503.1:ENST00000684589.1:ENST00000327441.11:ENST00000694962.1:ENST00000539062.6:ENST00000554930.5:ENST00000556451.5:ENST00000694963.1:ENST00000555870.5:ENST00000694964.1:ENST00000556753.5:ENST00000694965.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	47	2	1.88255	3.2507200000000003	4.61889	0.0269187	0.0166646	0.135288	0.102621
chr16	11914588	11914688	6446398	0	-	0.32	(0.28,0.32]	chr16	621131	2	SS5_PROX	SS5_PROX:INTRON	GSPT1	ENSG00000103342.13	ENST00000434724.7:ENST00000439887.6:ENST00000420576.6:ENST00000568849.5:ENST00000562169.1	protein_coding	protein_coding	protein_coding	protein_coding	2	40	2	1.83771	3.2506500000000003	4.66359	0.0591725	0.0193496	0.189982	0.108861
chr2	182944544	182944644	1285063	0	-	0.31	(0.28,0.32]	chr2	135307	20	INTRON	INTRON	NCKAP1	ENSG00000061676.15	ENST00000361354.9:ENST00000360982.2:ENST00000478449.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	40	2	1.83771	3.2506500000000003	4.66359	0.0591725	0.0193496	0.189982	0.108861
chr7	73456554	73456653	3554427	0	-	0.282828	(0.28,0.32]	chr7	330741	52	INTRON	INTRON	BAZ1B	ENSG00000009954.11	ENST00000339594.9:ENST00000404251.1	protein_coding	protein_coding	protein_coding	protein_coding	2	40	2	1.83771	3.2506500000000003	4.66359	0.0591725	0.0193496	0.189982	0.108861
chr12	62354731	62354830	5150509	0	+	0.363636	(0.35,0.378]	chr12	487356	51	INTRON	INTRON	USP15	ENSG00000135655.16	ENST00000353364.7:ENST00000550632.5:ENST00000280377.10	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	44	2	1.71046	3.2506250000000003	4.79079	0.0441269	0.00846427	0.162255	0.0776969
chr7	2370082	2370182	3269787	0	+	0.19	[0,0.28]	chr7	303843	4	SS5_PROX	SS5_PROX:INTRON	EIF3B	ENSG00000106263.19	ENST00000360876.9:ENST00000397011.2:ENST00000466199.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	63	2	1.67675	3.25054	4.82433	0.0352695	0.0200334	0.150332	0.109608
chr17	30739975	30740075	6589886	0	+	0.49	(0.476,0.515]	chr17	640853	19	EXON_MRNA	EXON_MRNA:INTRON	SUZ12P1:ENSG00000280069	ENSG00000264538.7:ENSG00000280069.1	ENST00000578070.5:ENST00000579526.5:ENST00000690405.1:ENST00000497969.6:ENST00000578195.6:ENST00000582557.5:ENST00000623719.1	TEC	TEC	TEC:transcribed_unprocessed_pseudogene	TEC:processed_transcript:transcribed_unprocessed_pseudogene	5	105	2	2.34237	3.2505349999999997	4.1587	0.00223831	5.17145e-5	0.0435144	0.00625679
chr2	241669103	241669185	1055799	0	+	0.487805	(0.476,0.515]	chr2	112536	4	SS5_PROX	SS5_PROX:INTRON	ATG4B	ENSG00000168397.17	ENST00000405546.7:ENST00000402096.5:ENST00000494465.5:ENST00000404914.8:ENST00000482507.5:ENST00000344376.9:ENST00000428861.1:ENST00000460211.5:ENST00000475693.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	76	2	2.93046	3.2504299999999997	3.5704	0.00118985	8.75056e-4	0.031662	0.0270926
chr15	92937117	92937217	6104066	0	+	0.4	(0.378,0.408]	chr15	581429	2	SS3_PROX	SS3_PROX:INTRON	ENSG00000279765:CHD2	ENSG00000279765.3:ENSG00000173575.22	ENST00000630790.1:ENST00000626874.2:ENST00000394196.9:ENST00000635856.1:ENST00000420239.7:ENST00000628375.2:ENST00000625990.3:ENST00000626782.2:ENST00000629136.1:ENST00000637572.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	43	2	1.8374	3.25039	4.66338	0.0299228	0.0103469	0.142135	0.0850389
chr1	16341277	16341377	382508	0	-	0.55	(0.515,0.57]	chr1	44888	255	INTRON	INTRON	FBXO42	ENSG00000037637.11	ENST00000375592.8	protein_coding	protein_coding	protein_coding	protein_coding	3	38	2	1.81744	3.2502699999999995	4.6831	0.031028	0.00471288	0.143457	0.0600108
chr5	79612799	79612891	2398726	0	+	0.576087	(0.57,1]	chr5	231668	5	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TENT2	ENSG00000164329.14	ENST00000505571.5:ENST00000423041.6:ENST00000504233.5:ENST00000453514.6:ENST00000428308.6:ENST00000515807.5:ENST00000502269.1:ENST00000296783.7:ENST00000514095.5:ENST00000508620.5:ENST00000503620.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	14	170	2	2.96634	3.250265	3.53419	2.94662e-6	1.27552e-8	0.00120829	3.89042e-5
chr11	70435923	70436012	4822012	0	+	0.573034	(0.57,1]	chr11	449686	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CTTN	ENSG00000085733.16	ENST00000346329.7:ENST00000301843.13:ENST00000376561.7:ENST00000393747.3:ENST00000529736.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	42	2	2.86892	3.25008	3.63124	0.00125753	2.87208e-4	0.0323608	0.0150568
chr9	137100629	137100723	4222792	0	+	0.574468	(0.57,1]	chr9	387926	9	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	MAN1B1	ENSG00000177239.16	ENST00000682881.1:ENST00000683324.1:ENST00000684138.1:ENST00000683135.1:ENST00000542372.2:ENST00000371587.9:ENST00000684366.1:ENST00000684229.1:ENST00000683355.1:ENST00000682117.1:ENST00000683475.1:ENST00000682425.1:ENST00000682210.1:ENST00000684645.1:ENST00000683979.1:ENST00000371589.9:ENST00000535144.6:ENST00000684272.1:ENST00000475449.7:ENST00000684759.1:ENST00000545539.6:ENST00000684144.1:ENST00000683987.1:ENST00000682212.1:ENST00000544448.6:ENST00000684297.1:ENST00000474902.5:ENST00000682964.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	42	2	2.86892	3.25008	3.63124	0.00125753	2.87208e-4	0.0323608	0.0150568
chr6	35879232	35879332	3088398	0	-	0.47	(0.44,0.476]	chr6	288860	45	INTRON	INTRON	SRPK1	ENSG00000096063.16	ENST00000373825.7:ENST00000423325.6:ENST00000346162.10:ENST00000361690.7:ENST00000510290.5:ENST00000373821.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	93	2	2.56423	3.25004	3.93585	0.00226303	1.04728e-4	0.0425438	0.00863456
chr17	63856656	63856745	6661588	0	+	0.52809	(0.515,0.57]	chr17	650096	1	SS3_PROX	SS3_PROX:INTRON	TCAM1P	ENSG00000240280.7	ENST00000463377.6:ENST00000469014.1:ENST00000482005.5:ENST00000466125.1	transcribed_unitary_pseudogene	processed_transcript	transcribed_unitary_pseudogene	processed_transcript	2	36	2	2.32967	3.25002	4.17037	0.0139194	0.0133671	0.10247	0.0946278
chr10	86489822	86489922	4659043	0	-	0.36	(0.35,0.378]	chr10	429282	155	INTRON	INTRON	WAPL	ENSG00000062650.20	ENST00000298767.10	protein_coding	protein_coding	protein_coding	protein_coding	3	84	2	2.56071	3.2499399999999996	3.93917	0.00725312	1.19694e-4	0.072984	0.00936986
chr2	87044579	87044675	1172152	0	-	0.385417	(0.378,0.408]	chr2	125126	2	INTRON	INTRON	ANAPC1P2	ENSG00000285793.1:ENSG00000231259.5	ENST00000648819.1:ENST00000452554.3	lncRNA	lncRNA	lncRNA:unprocessed_pseudogene	lncRNA:unprocessed_pseudogene	1	30	2	2.53503	3.24987	3.96471	0.032421	0.0319942	0.145026	0.13174
chr2	206124476	206124576	1317550	0	-	0.4	(0.378,0.408]	chr2	138086	2	SS3_PROX	SS3_PROX:INTRON	NDUFS1	ENSG00000023228.14	ENST00000233190.11:ENST00000455934.6:ENST00000423725.5:ENST00000457011.5:ENST00000440274.5:ENST00000432169.5:ENST00000449699.5	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	2.53503	3.24987	3.96471	0.032421	0.0319942	0.145026	0.13174
chr6	157392361	157392461	3011654	0	+	0.39	(0.378,0.408]	chr6	281268	97	INTRON	INTRON	ZDHHC14	ENSG00000175048.17	ENST00000414563.6:ENST00000359775.10	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	2.53503	3.24987	3.96471	0.032421	0.0319942	0.145026	0.13174
chr15	20437832	20437932	6118229	0	-	0.52	(0.515,0.57]	chr15	582369	4	SS3_PROX	SS3_PROX:INTRON	HERC2P3	ENSG00000180229.12	ENST00000426501.5:ENST00000428453.5:ENST00000437318.5:ENST00000430598.5:ENST00000429257.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	3	69	2	3.12845	3.24985	3.37125	0.00136343	4.79786e-4	0.0339121	0.0203136
chr12	62557569	62557666	5152097	0	+	0.237113	[0,0.28]	chr12	487597	10	INTRON	INTRON	MON2	ENSG00000061987.16	ENST00000641654.1:ENST00000546600.5:ENST00000393630.8:ENST00000547095.5:ENST00000552738.5:ENST00000393629.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	44	2	1.95356	3.24983	4.5461	0.0463152	0.0365918	0.166231	0.138959
chr12	121315785	121315885	5436798	0	-	0.23	[0,0.28]	chr12	519847	54	INTRON	INTRON	ANAPC5	ENSG00000089053.13	ENST00000261819.8:ENST00000535641.5:ENST00000541887.5:ENST00000534976.5:ENST00000441917.6:ENST00000539079.5:ENST00000544314.5:ENST00000535482.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	44	2	1.95356	3.24983	4.5461	0.0463152	0.0365918	0.166231	0.138959
chr5	95508796	95508895	2680507	0	-	0.272727	[0,0.28]	chr5	253303	14	INTRON	INTRON	TTC37	ENSG00000198677.12	ENST00000649566.1:ENST00000358746.7:ENST00000508181.5:ENST00000512026.5:ENST00000515176.5:ENST00000507805.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	44	2	1.95356	3.24983	4.5461	0.0463152	0.0365918	0.166231	0.138959
chr5	66145283	66145383	2372497	0	+	0.33	(0.32,0.35]	chr5	228648	1	SS5_PROX	SS5_PROX:INTRON	SREK1	ENSG00000153914.16	ENST00000521691.5:ENST00000612404.4:ENST00000523851.1:ENST00000334121.11:ENST00000520058.1:ENST00000520953.5:ENST00000522912.5:ENST00000524111.5:ENST00000380918.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	122	2	3.14789	3.24981	3.35173	5.00642e-4	3.15473e-4	0.020217099999999998	0.0163709
chr1	67247260	67247360	141190	0	+	0.37	(0.35,0.378]	chr1	15789	66	INTRON	INTRON	IL23R	ENSG00000162594.16	ENST00000637002.1:ENST00000347310.10:ENST00000425614.3:ENST00000473881.2:ENST00000395227.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	27	2	2.30249	3.2497949999999998	4.1971	0.0519726	0.0367539	0.176696	0.138959
chr10	21647682	21647782	4405557	0	+	0.36	(0.35,0.378]	chr10	406487	226	INTRON	INTRON	MLLT10	ENSG00000078403.17	ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000651298.1:ENST00000377059.7:ENST00000652258.1:ENST00000651382.1:ENST00000438473.6:ENST00000650921.1:ENST00000651405.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	27	2	2.30249	3.2497949999999998	4.1971	0.0519726	0.0367539	0.176696	0.138959
chr10	35390720	35390820	4425045	0	+	0.36	(0.35,0.378]	chr10	407899	532	INTRON	INTRON	CCNY	ENSG00000108100.18	ENST00000374706.5:ENST00000490012.6:ENST00000493157.6:ENST00000374704.8:ENST00000265375.13:ENST00000339497.7:ENST00000492478.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	27	2	2.30249	3.2497949999999998	4.1971	0.0519726	0.0367539	0.176696	0.138959
chr12	62290785	62290884	5149853	0	+	0.363636	(0.35,0.378]	chr12	487287	117	INTRON	INTRON	USP15	ENSG00000135655.16	ENST00000353364.7:ENST00000549523.5:ENST00000550632.5:ENST00000312635.10:ENST00000548524.5:ENST00000280377.10:ENST00000551206.5:ENST00000546718.5:ENST00000537297.2:ENST00000549237.5:ENST00000548836.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	27	2	2.30249	3.2497949999999998	4.1971	0.0519726	0.0367539	0.176696	0.138959
chr12	95269441	95269538	5192634	0	+	0.350515	(0.35,0.378]	chr12	491059	25	INTRON	INTRON	VEZT	ENSG00000028203.19	ENST00000547611.5:ENST00000547997.5:ENST00000546557.5:ENST00000548838.5:ENST00000436874.6:ENST00000546398.5:ENST00000548455.5:ENST00000552660.5:ENST00000551994.5:ENST00000549192.5:ENST00000548371.5:ENST00000550106.5:ENST00000551695.5:ENST00000397792.8:ENST00000356859.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	27	2	2.30249	3.2497949999999998	4.1971	0.0519726	0.0367539	0.176696	0.138959
chr16	81000155	81000254	6530630	0	-	0.373737	(0.35,0.378]	chr16	632671	13	INTRON	INTRON	CMC2	ENSG00000103121.9	ENST00000219400.8:ENST00000486645.5:ENST00000570195.5:ENST00000569187.5:ENST00000570086.5:ENST00000565650.5:ENST00000567593.5:ENST00000568228.5:ENST00000565914.5:ENST00000565108.5:ENST00000565925.5:ENST00000564174.5:ENST00000565613.5:ENST00000562713.3:ENST00000562828.5:ENST00000630396.1:ENST00000565514.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	27	2	2.30249	3.2497949999999998	4.1971	0.0519726	0.0367539	0.176696	0.138959
chr2	24799844	24799944	712155	0	+	0.36	(0.35,0.378]	chr2	82366	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	CENPO	ENSG00000138092.11	ENST00000473706.5:ENST00000491031.5:ENST00000380834.7:ENST00000486527.6:ENST00000260662.2:ENST00000498362.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	27	2	2.30249	3.2497949999999998	4.1971	0.0519726	0.0367539	0.176696	0.138959
chr2	177501921	177502020	927198	0	+	0.373737	(0.35,0.378]	chr2	101879	18	INTRON	INTRON	AGPS	ENSG00000018510.18	ENST00000679459.1:ENST00000637633.2:ENST00000680770.1:ENST00000680705.1:ENST00000681752.1:ENST00000681565.1:ENST00000680893.1:ENST00000681032.1:ENST00000679421.1:ENST00000409888.1:ENST00000642466.2:ENST00000264167.11:ENST00000680155.1:ENST00000679478.1:ENST00000681449.1:ENST00000681891.1:ENST00000681028.1:ENST00000680028.1:ENST00000679994.1:ENST00000680390.1:ENST00000681300.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	27	2	2.30249	3.2497949999999998	4.1971	0.0519726	0.0367539	0.176696	0.138959
chr21	15741621	15741721	7370211	0	+	0.36	(0.35,0.378]	chr21	752186	108	INTRON	INTRON	USP25	ENSG00000155313.16	ENST00000400183.7:ENST00000285681.6:ENST00000285679.10:ENST00000351097.9	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	2.30249	3.2497949999999998	4.1971	0.0519726	0.0367539	0.176696	0.138959
chr22	20942525	20942625	7480769	0	+	0.36	(0.35,0.378]	chr22	763096	79	INTRON	INTRON	CRKL	ENSG00000099942.13	ENST00000354336.8:ENST00000411769.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	27	2	2.30249	3.2497949999999998	4.1971	0.0519726	0.0367539	0.176696	0.138959
chr4	126442138	126442237	2235126	0	-	0.363636	(0.35,0.378]	chr4	219005	68	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1:ENST00000651327.1	lncRNA	lncRNA	lncRNA	lncRNA	1	27	2	2.30249	3.2497949999999998	4.1971	0.0519726	0.0367539	0.176696	0.138959
chr5	136178173	136178273	2493297	0	+	0.37	(0.35,0.378]	chr5	238185	8	UTR3	UTR3:EXON_MRNA:INTRON	SMAD5	ENSG00000113658.18	ENST00000545279.6:ENST00000545620.5:ENST00000513418.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	27	2	2.30249	3.2497949999999998	4.1971	0.0519726	0.0367539	0.176696	0.138959
chr5	143391692	143391792	2742411	0	-	0.36	(0.35,0.378]	chr5	258581	18	INTRON	INTRON	NR3C1	ENSG00000113580.15	ENST00000343796.6:ENST00000394464.7:ENST00000415690.6:ENST00000424646.6:ENST00000504572.5:ENST00000394466.6:ENST00000231509.7:ENST00000652686.1:ENST00000503201.1	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	2.30249	3.2497949999999998	4.1971	0.0519726	0.0367539	0.176696	0.138959
chr9	37439067	37439164	4250752	0	-	0.360825	(0.35,0.378]	chr9	391476	11	UTR3	UTR3:EXON_MRNA	ZBTB5	ENSG00000168795.5	ENST00000307750.5	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	2.30249	3.2497949999999998	4.1971	0.0519726	0.0367539	0.176696	0.138959
chr9	111469803	111469903	4315147	0	-	0.37	(0.35,0.378]	chr9	396838	179	INTRON	INTRON	ECPAS	ENSG00000136813.15	ENST00000684092.1:ENST00000338205.9:ENST00000259335.8:ENST00000602447.5:ENST00000602978.1	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	2.30249	3.2497949999999998	4.1971	0.0519726	0.0367539	0.176696	0.138959
chrX	66221628	66221728	7673280	0	+	0.44	(0.408,0.44]	chrX	785355	130	INTRON	INTRON	HEPH	ENSG00000089472.18	ENST00000519389.6:ENST00000683049.1:ENST00000458621.6:ENST00000684042.1:ENST00000343002.7:ENST00000336279.9:ENST00000441993.7:ENST00000419594.6:ENST00000682362.1:ENST00000425114.2:ENST00000682927.1:ENST00000683420.1:ENST00000684071.1:ENST00000684625.1:ENST00000684603.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	58	2	1.87932	3.249705	4.62009	0.0172104	0.00504155	0.104099	0.0646039
chr5	109382602	109382702	2702095	0	-	0.48	(0.476,0.515]	chr5	254352	5	INTRON	INTRON	PJA2	ENSG00000198961.10	ENST00000361557.4:ENST00000361189.7:ENST00000511624.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	57	2	3.19975	3.24957	3.29939	0.00383299	0.00211868	0.0542786	0.0425644
chr12	55798268	55798368	5332633	0	-	0.48	(0.476,0.515]	chr12	509153	18	INTRON	INTRON	SARNP	ENSG00000205323.9	ENST00000546604.5:ENST00000552884.5:ENST00000336133.8:ENST00000552080.1:ENST00000552207.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	77	2	2.54157	3.249535	3.9575	0.00697457	9.49972e-5	0.0718189	0.00818267
chr17	82577653	82577753	6693191	0	+	0.35	(0.32,0.35]	chr17	654652	54	INTRON	INTRON	FOXK2	ENSG00000141568.21	ENST00000473637.6:ENST00000335255.10:ENST00000531030.5:ENST00000526383.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	252	2	3.23178	3.2494	3.26702	4.26006e-5	8.79941e-6	0.00555805	0.0021349
chr7	111303789	111303889	3621520	0	-	0.36	(0.35,0.378]	chr7	337093	3399	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	56	2	1.34146	3.249345	5.15723	0.0634598	0.00272706	0.19806000000000001	0.0467523
chr8	27332579	27332679	3719855	0	+	0.46	(0.44,0.476]	chr8	345640	53	INTRON	INTRON	PTK2B	ENSG00000120899.18	ENST00000397501.5:ENST00000522338.5:ENST00000521164.5:ENST00000346049.10:ENST00000420218.3:ENST00000522517.5	protein_coding	protein_coding	protein_coding	protein_coding	3	46	2	1.71574	3.2493350000000003	4.78293	0.045256	0.00292033	0.149888	0.0494641
chr3	197860136	197860236	1598427	0	+	0.49	(0.476,0.515]	chr3	165649	8	INTRON	INTRON	LRCH3	ENSG00000186001.14	ENST00000438796.6:ENST00000428136.2:ENST00000425562.7:ENST00000441090.6:ENST00000414675.6:ENST00000334859.8:ENST00000461674.5:ENST00000452660.5:ENST00000433298.5:ENST00000481048.5:ENST00000471667.5:ENST00000483442.5:ENST00000473177.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	43	2	1.96833	3.24928	4.53023	0.0195007	0.0119748	0.119967	0.0899583
chr12	112040878	112040978	5414719	0	-	0.29	(0.28,0.32]	chr12	517132	3	SS3_PROX	SS3_PROX:INTRON	NAA25	ENSG00000111300.10	ENST00000261745.9:ENST00000552527.5:ENST00000549711.5:ENST00000550701.5:ENST00000551858.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	49	2	1.76378	3.24926	4.73474	0.0395495	0.0162835	0.161534	0.101453
chr15	63267380	63267479	6041544	0	+	0.30303	(0.28,0.32]	chr15	575291	39	UTR3	UTR3:EXON_MRNA	RAB8B	ENSG00000166128.13	ENST00000321437.9	protein_coding	protein_coding	protein_coding	protein_coding	3	49	2	1.76378	3.24926	4.73474	0.0395495	0.0162835	0.161534	0.101453
chr8	140940279	140940379	4079465	0	-	0.53	(0.515,0.57]	chr8	370572	58	INTRON	INTRON	PTK2	ENSG00000169398.20	ENST00000696786.1:ENST00000522684.5:ENST00000395218.3:ENST00000521059.5:ENST00000519993.5:ENST00000340930.7:ENST00000519419.5:ENST00000524357.5:ENST00000521791.5:ENST00000523067.5:ENST00000520828.5:ENST00000519881.5:ENST00000520892.5:ENST00000523803.5:ENST00000521907.5:ENST00000517453.5:ENST00000520045.5:ENST00000521332.5:ENST00000524040.5:ENST00000523679.1:ENST00000524257.5:ENST00000523797.1:ENST00000519635.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	50	2	3.19178	3.249215	3.30665	0.00289534	0.00213226	0.0494641	0.041756
chr16	16546201	16546301	6311324	0	+	0.27	[0,0.28]	chr16	604098	462	INTRON	INTRON	ENSG00000260126	ENSG00000260126.2	ENST00000567465.2	lncRNA	lncRNA	lncRNA	lncRNA	1	36	2	2.20927	3.24921	4.28915	0.0794763	0.0319595	0.19979	0.14477
chr6	140421983	140422083	2970676	0	+	0.27	[0,0.28]	chr6	279019	1065	INTRON	INTRON	ENSG00000288714	ENSG00000288714.1	ENST00000684511.1	lncRNA	lncRNA	lncRNA	lncRNA	1	36	2	2.20927	3.24921	4.28915	0.0794763	0.0319595	0.19979	0.14477
chrX	18284800	18284900	7770351	0	-	0.52	(0.515,0.57]	chrX	794172	186	INTRON	INTRON	SCML2	ENSG00000102098.19	ENST00000251900.9:ENST00000665583.1	protein_coding	protein_coding	protein_coding	protein_coding	4	88	2	3.06239	3.2491849999999998	3.43598	6.62949e-4	7.05043e-5	0.0234815	0.00694412
chr19	2136412	2136510	7115395	0	-	0.581633	(0.57,1]	chr19	715251	26	INTRON	INTRON	AP3D1	ENSG00000065000.19	ENST00000643116.3:ENST00000345016.9:ENST00000643010.1:ENST00000591284.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	65	2	3.09993	3.24911	3.39829	6.63721e-5	6.42666e-5	0.00711194	0.00675077
chr1	51368126	51368225	452817	0	-	0.282828	(0.28,0.32]	chr1	54311	17	INTRON	INTRON	EPS15	ENSG00000085832.17	ENST00000371733.8:ENST00000371730.6	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	2.2609	3.2490449999999997	4.23719	0.0671429	0.0264147	0.183051	0.133676
chr18	2788574	2788674	6866256	0	+	0.31	(0.28,0.32]	chr18	680200	32	INTRON	INTRON	SMCHD1	ENSG00000101596.17	ENST00000320876.11:ENST00000688342.1:ENST00000577880.5:ENST00000584897.5:ENST00000686763.1:ENST00000686864.1:ENST00000688708.1:ENST00000645355.1:ENST00000688964.1:ENST00000685656.1:ENST00000689034.1:ENST00000642953.1:ENST00000689800.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	33	2	2.2609	3.2490449999999997	4.23719	0.0671429	0.0264147	0.183051	0.133676
chr15	57999415	57999514	6186870	0	-	0.40404	(0.378,0.408]	chr15	589758	39	INTRON	INTRON	ALDH1A2	ENSG00000128918.15	ENST00000537372.5:ENST00000249750.9:ENST00000347587.7:ENST00000430119.6:ENST00000558231.5:ENST00000559517.5:ENST00000559266.5:ENST00000561070.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	96	2	2.95379	3.248925	3.54406	0.00110718	2.62263e-4	0.0306086	0.0143317
chr3	138238019	138238115	1514468	0	+	0.354167	(0.35,0.378]	chr3	158340	1	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	ARMC8	ENSG00000114098.18	ENST00000538260.5:ENST00000481646.5:ENST00000469044.6:ENST00000491704.5:ENST00000358441.6:ENST00000489213.5:ENST00000461822.5:ENST00000485396.5:ENST00000471453.5:ENST00000470821.5:ENST00000463485.5:ENST00000469860.2:ENST00000470549.6:ENST00000460495.5:ENST00000486832.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	56	2	1.40722	3.2488699999999997	5.09052	0.0733776	0.00123501	0.190105	0.0326215
chr19	47133173	47133270	7083891	0	+	0.453608	(0.44,0.476]	chr19	708735	17	INTRON	INTRON	SAE1	ENSG00000142230.13	ENST00000594144.5:ENST00000594526.5:ENST00000597808.5:ENST00000413379.7:ENST00000600706.5:ENST00000270225.12:ENST00000598840.5:ENST00000414294.6:ENST00000600753.1:ENST00000660039.1:ENST00000664120.1:ENST00000596995.1:ENST00000392776.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	77	2	2.78046	3.2488650000000003	3.71727	0.0028389	3.2089e-4	0.0473151	0.0159645
chr4	138191032	138191132	2245314	0	-	0.35	(0.32,0.35]	chr4	219484	54	INTRON	INTRON	SLC7A11	ENSG00000151012.13	ENST00000280612.9:ENST00000509248.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	76	2	1.26251	3.248855	5.2352	0.0481909	0.0028268	0.171808	0.0472361
chr7	152342590	152342690	3680357	0	-	0.44	(0.408,0.44]	chr7	341647	115	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000682301.1:ENST00000452749.2:ENST00000680867.1:ENST00000683800.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	125	2	3.12171	3.2487950000000003	3.37588	6.63666e-4	2.08728e-5	0.0234815	0.00353198
chr5	134375285	134375383	2488614	0	+	0.255102	[0,0.28]	chr5	237585	4	INTRON	INTRON	UBE2B	ENSG00000119048.9	ENST00000507277.2:ENST00000510021.5:ENST00000511807.1:ENST00000265339.7:ENST00000506787.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	111	2	3.24659	3.248725	3.25086	0.00570201	4.54073e-4	0.0656459	0.0192381
chr1	247166056	247166156	683815	0	-	0.6	(0.57,1]	chr1	80174	58	INTRON	INTRON	ZNF124	ENSG00000196418.13	ENST00000472531.5:ENST00000491356.5:ENST00000543802.3:ENST00000340684.10:ENST00000491848.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	45	2	2.38391	3.248685	4.11346	0.0104374	1.70324e-5	0.0902296	0.00330681
chr10	72878272	72878371	4451967	0	+	0.50505	(0.476,0.515]	chr10	410805	63	INTRON	INTRON	MCU	ENSG00000156026.15	ENST00000373053.8:ENST00000357157.10:ENST00000605597.5:ENST00000536019.5:ENST00000603118.5:ENST00000605416.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	26	2	2.47949	3.24863	4.01777	0.0411361	0.0326974	0.145164	0.1451
chr10	133306360	133306458	4717657	0	-	0.489796	(0.476,0.515]	chr10	435513	30	INTRON	INTRON	TUBGCP2	ENSG00000130640.15	ENST00000252936.8:ENST00000682123.1:ENST00000683612.1:ENST00000683786.1:ENST00000682515.1:ENST00000682905.1:ENST00000684478.1:ENST00000682161.1:ENST00000682332.1:ENST00000684487.1:ENST00000683673.1:ENST00000682093.1:ENST00000683014.1:ENST00000682631.1:ENST00000683060.1:ENST00000683383.1:ENST00000682990.1:ENST00000417178.7:ENST00000482278.5:ENST00000543663.6:ENST00000683704.1:ENST00000683552.1:ENST00000684421.1:ENST00000424450.2:ENST00000470829.2:ENST00000683031.1:ENST00000487796.2:ENST00000480198.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	26	2	2.47949	3.24863	4.01777	0.0411361	0.0326974	0.145164	0.1451
chr12	4279518	4279617	5067467	0	+	0.494949	(0.476,0.515]	chr12	478287	2	INTRON	INTRON	CCND2	ENSG00000118971.9	ENST00000676411.1:ENST00000676279.1:ENST00000261254.8:ENST00000675880.1:ENST00000536537.2:ENST00000675468.1:ENST00000536795.1:ENST00000541542.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	26	2	2.47949	3.24863	4.01777	0.0411361	0.0326974	0.145164	0.1451
chr13	45512852	45512951	5481231	0	+	0.494949	(0.476,0.515]	chr13	525177	6	INTRON	INTRON	COG3	ENSG00000136152.15	ENST00000349995.10	protein_coding	protein_coding	protein_coding	protein_coding	1	26	2	2.47949	3.24863	4.01777	0.0411361	0.0326974	0.145164	0.1451
chr15	22854065	22854165	5976679	0	+	0.51	(0.476,0.515]	chr15	568422	4	INTRON	INTRON	NIPA2	ENSG00000140157.16	ENST00000398014.7:ENST00000359727.8:ENST00000674173.1:ENST00000337451.8:ENST00000674289.1:ENST00000674477.1:ENST00000398013.7:ENST00000674330.1:ENST00000539711.2:ENST00000674215.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	26	2	2.47949	3.24863	4.01777	0.0411361	0.0326974	0.145164	0.1451
chr15	44445892	44445992	6014534	0	+	0.5	(0.476,0.515]	chr15	572914	174	INTRON	INTRON	CTDSPL2	ENSG00000137770.14	ENST00000558791.5:ENST00000260327.9:ENST00000560834.1:ENST00000558966.5:ENST00000559793.5:ENST00000558968.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	26	2	2.47949	3.24863	4.01777	0.0411361	0.0326974	0.145164	0.1451
chr17	46058968	46059067	6783518	0	-	0.50505	(0.476,0.515]	chr17	669181	79	INTRON	INTRON	KANSL1	ENSG00000120071.15	ENST00000574590.6:ENST00000572904.6:ENST00000432791.7:ENST00000575318.6:ENST00000638275.1:ENST00000262419.10:ENST00000648792.1:ENST00000639531.1:ENST00000639150.1:ENST00000639853.1:ENST00000571698.2:ENST00000639375.1:ENST00000577114.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	26	2	2.47949	3.24863	4.01777	0.0411361	0.0326974	0.145164	0.1451
chr2	190657458	190657558	959118	0	+	0.48	(0.476,0.515]	chr2	104110	9	INTRON	INTRON	NAB1	ENSG00000138386.17	ENST00000448811.1:ENST00000416973.1:ENST00000426601.1:ENST00000409581.5:ENST00000337386.10:ENST00000423376.1:ENST00000423076.1	protein_coding	protein_coding	protein_coding	protein_coding	1	26	2	2.47949	3.24863	4.01777	0.0411361	0.0326974	0.145164	0.1451
chr21	36886960	36887060	7460763	0	-	0.49	(0.476,0.515]	chr21	760114	1193	INTRON	INTRON	HLCS	ENSG00000159267.17	ENST00000674895.3:ENST00000336648.8:ENST00000612277.4:ENST00000399120.5:ENST00000675307.1:ENST00000675057.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	26	2	2.47949	3.24863	4.01777	0.0411361	0.0326974	0.145164	0.1451
chr3	186579880	186579913	1585899	0	+	0.515152	(0.476,0.515]	chr3	164244	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:INTRON	DNAJB11	ENSG00000090520.12	ENST00000439351.5:ENST00000495390.2:ENST00000464877.2:ENST00000680338.1:ENST00000265028.8:ENST00000681475.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	26	2	2.47949	3.24863	4.01777	0.0411361	0.0326974	0.145164	0.1451
chr3	196498775	196498874	1899973	0	-	0.50505	(0.476,0.515]	chr3	190261	97	INTRON	INTRON	RNF168	ENSG00000163961.4	ENST00000318037.3:ENST00000437070.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	26	2	2.47949	3.24863	4.01777	0.0411361	0.0326974	0.145164	0.1451
chr4	39910838	39910936	2131526	0	-	0.489796	(0.476,0.515]	chr4	210200	1	INTRON	INTRON	PDS5A	ENSG00000121892.15	ENST00000303538.13:ENST00000503396.5:ENST00000513798.1:ENST00000512643.1:ENST00000508625.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	26	2	2.47949	3.24863	4.01777	0.0411361	0.0326974	0.145164	0.1451
chr6	132770524	132770612	3222530	0	-	0.477273	(0.476,0.515]	chr6	299578	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SLC18B1	ENSG00000146409.12	ENST00000275227.9:ENST00000647932.1:ENST00000650278.1:ENST00000650136.1:ENST00000650298.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	26	2	2.47949	3.24863	4.01777	0.0411361	0.0326974	0.145164	0.1451
chr9	124872863	124872955	4197850	0	+	0.478261	(0.476,0.515]	chr9	383066	4	EXON_LNCRNA	EXON_LNCRNA:INTRON	ARPC5L	ENSG00000136950.13	ENST00000353214.6:ENST00000259477.6:ENST00000465124.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	26	2	2.47949	3.24863	4.01777	0.0411361	0.0326974	0.145164	0.1451
chr9	136444851	136444951	4374622	0	-	0.48	(0.476,0.515]	chr9	402949	4	SS5_PROX	SS5_PROX:INTRON	SEC16A	ENSG00000148396.19	ENST00000290037.10:ENST00000313050.11:ENST00000371706.8:ENST00000453963.5:ENST00000277537.10:ENST00000313084.9:ENST00000684901.1:ENST00000689049.1:ENST00000689439.1:ENST00000688461.1:ENST00000688052.1:ENST00000690691.1:ENST00000431893.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	26	2	2.47949	3.24863	4.01777	0.0411361	0.0326974	0.145164	0.1451
chr4	68331503	68331602	2154694	0	-	0.292929	(0.28,0.32]	chr4	212253	8	INTRON	INTRON	YTHDC1	ENSG00000083896.13	ENST00000344157.9:ENST00000355665.7:ENST00000579690.5	protein_coding	protein_coding	protein_coding	protein_coding	3	100	2	3.08462	3.2485850000000003	3.41255	0.0078976	1.55656e-4	0.076155	0.0106835
chr4	126691566	126691666	2237625	0	-	0.3	(0.28,0.32]	chr4	219023	2261	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	6	185	2	3.14457	3.24844	3.35231	9.588e-4	1.36025e-5	0.0282401	0.00275678
chr15	57997825	57997924	6186854	0	-	0.363636	(0.35,0.378]	chr15	589758	23	INTRON	INTRON	ALDH1A2	ENSG00000128918.15	ENST00000537372.5:ENST00000249750.9:ENST00000347587.7:ENST00000430119.6:ENST00000558231.5:ENST00000559517.5:ENST00000559266.5:ENST00000561070.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	114	2	2.6264	3.24841	3.87042	5.94723e-4	2.9524e-4	0.0221865	0.0159581
chr3	140966856	140966933	1523206	0	+	0.363636	(0.35,0.378]	chr3	158676	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:SS5_PROX:INTRON	SLC25A36	ENSG00000114120.14	ENST00000446041.6:ENST00000324194.12:ENST00000648615.1:ENST00000393015.8:ENST00000502594.5:ENST00000453248.6:ENST00000631654.1:ENST00000513887.5:ENST00000512023.5:ENST00000512506.5:ENST00000502866.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	85	2	2.4077	3.248335	4.08897	0.0122026	5.3761e-5	0.0910127	0.00600135
chr5	127524020	127524108	2479859	0	+	0.409091	(0.408,0.44]	chr5	236780	6	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PRRC1	ENSG00000164244.21	ENST00000296666.13:ENST00000512871.1:ENST00000442138.6:ENST00000512635.2:ENST00000507774.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	42	2	1.81759	3.248265	4.67894	0.0316273	0.0087648	0.144405	0.0788605
chr12	111449962	111450060	5228041	0	+	0.571429	(0.57,1]	chr12	495525	18	UTR3	UTR3:EXON_MRNA	SH2B3	ENSG00000111252.11	ENST00000341259.7	protein_coding	protein_coding	protein_coding	protein_coding	2	32	2	3.09313	3.24823	3.40333	0.00369015	9.20604e-4	0.0535094	0.0278392
chr22	21861123	21861223	7561321	0	-	0.59	(0.57,1]	chr22	773388	529	INTRON	INTRON	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	2	32	2	3.09313	3.24823	3.40333	0.00369015	9.20604e-4	0.0535094	0.0278392
chr22	31424772	31424868	7503266	0	+	0.583333	(0.57,1]	chr22	765625	10	INTRON	INTRON	DRG1	ENSG00000185721.13	ENST00000331457.9	protein_coding	protein_coding	protein_coding	protein_coding	2	32	2	3.09313	3.24823	3.40333	0.00369015	9.20604e-4	0.0535094	0.0278392
chr1	246208625	246208725	677721	0	-	0.44	(0.408,0.44]	chr1	79733	150	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000453676.5:ENST00000462422.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	26	2	2.49258	3.248215	4.00385	0.0454568	0.0314608	0.149888	0.144381
chr10	80158699	80158799	4657775	0	-	0.43	(0.408,0.44]	chr10	429069	2	SS5_PROX	SS5_PROX:INTRON	ANXA11	ENSG00000122359.18	ENST00000372231.7:ENST00000438331.5:ENST00000422982.8:ENST00000265447.8:ENST00000447489.1	protein_coding	protein_coding	protein_coding	protein_coding	1	26	2	2.49258	3.248215	4.00385	0.0454568	0.0314608	0.149888	0.144381
chr12	98631717	98631816	5395510	0	-	0.424242	(0.408,0.44]	chr12	514486	46	INTRON	INTRON	IKBIP	ENSG00000166130.15	ENST00000342502.6:ENST00000393042.3:ENST00000299157.5	protein_coding	protein_coding	protein_coding	protein_coding	1	26	2	2.49258	3.248215	4.00385	0.0454568	0.0314608	0.149888	0.144381
chr15	75447652	75447743	6224035	0	-	0.417582	(0.408,0.44]	chr15	594533	1	UTR5	UTR5:EXON_MRNA:INTRON	SIN3A	ENSG00000169375.16	ENST00000394947.8:ENST00000360439.8:ENST00000394949.8:ENST00000564778.5:ENST00000562776.5:ENST00000568431.5:ENST00000567289.5:ENST00000570115.5:ENST00000568309.5:ENST00000568190.1:ENST00000568919.1:ENST00000565264.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	26	2	2.49258	3.248215	4.00385	0.0454568	0.0314608	0.149888	0.144381
chr2	71360846	71360945	807305	0	+	0.414141	(0.408,0.44]	chr2	90154	47	INTRON	INTRON	ZNF638	ENSG00000075292.19	ENST00000494621.5:ENST00000410075.5:ENST00000466975.5:ENST00000466330.5:ENST00000464375.5:ENST00000475743.1:ENST00000409544.5:ENST00000264447.9	protein_coding	protein_coding	protein_coding	protein_coding	1	26	2	2.49258	3.248215	4.00385	0.0454568	0.0314608	0.149888	0.144381
chr3	15292020	15292119	1620761	0	-	0.424242	(0.408,0.44]	chr3	167619	161	INTRON	INTRON	SH3BP5	ENSG00000131370.16	ENST00000383791.8:ENST00000412806.1:ENST00000426925.5:ENST00000408919.7:ENST00000450625.1:ENST00000465894.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	26	2	2.49258	3.248215	4.00385	0.0454568	0.0314608	0.149888	0.144381
chr5	160097560	160097660	2759581	0	-	0.42	(0.408,0.44]	chr5	260436	31	INTRON	INTRON	PWWP2A	ENSG00000170234.13	ENST00000456329.7:ENST00000523662.1:ENST00000307063.9:ENST00000520662.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	26	2	2.49258	3.248215	4.00385	0.0454568	0.0314608	0.149888	0.144381
chr17	32378694	32378793	6598282	0	+	0.292929	(0.28,0.32]	chr17	641948	54	UTR3	UTR3:EXON_MRNA	ZNF207	ENSG00000010244.19	ENST00000394670.9:ENST00000577908.5:ENST00000581531.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	21	611	2	3.15702	3.2482100000000003	3.3394	4.90083e-6	7.92498e-7	0.00163805	5.02148e-4
chr21	44792692	44792792	7468640	0	-	0.45	(0.44,0.476]	chr21	761177	42	INTRON	INTRON	UBE2G2	ENSG00000184787.19	ENST00000345496.7:ENST00000497630.5:ENST00000477954.5:ENST00000491513.5:ENST00000330942.9:ENST00000478200.1:ENST00000497664.5:ENST00000462569.5:ENST00000490450.5:ENST00000496395.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	38	2	1.96602	3.24818	4.53034	0.0426807	0.00672609	0.148082	0.0738715
chr16	28828617	28828711	6334388	0	+	0.340426	(0.32,0.35]	chr16	606524	13	INTRON	INTRON	ATXN2L	ENSG00000168488.19	ENST00000336783.9:ENST00000563314.5:ENST00000340394.12:ENST00000382686.8:ENST00000395547.6:ENST00000325215.10:ENST00000564304.5:ENST00000570200.5:ENST00000568266.5:ENST00000565971.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	222	2	3.19508	3.2481400000000002	3.3012	1.66545e-4	5.56966e-6	0.0118326	0.00163971
chr17	20905829	20905929	6576441	0	+	0.5	(0.476,0.515]	chr17	639392	7	INTRON	INTRON	CCDC144NL-AS1	ENSG00000233098.10	ENST00000692759.1:ENST00000443508.8:ENST00000692309.1:ENST00000439794.6:ENST00000417232.6:ENST00000577860.5	lncRNA	lncRNA	lncRNA	lncRNA	4	48	2	1.58842	3.248015	4.90761	0.0406588	0.00386428	0.161534	0.0542786
chr7	155710872	155710972	3452568	0	+	0.43	(0.408,0.44]	chr7	322691	3	SS3_PROX	SS3_PROX:INTRON	RBM33	ENSG00000184863.11	ENST00000401878.8:ENST00000307403.6:ENST00000440108.5:ENST00000392761.3:ENST00000486747.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	128	2	2.40725	3.2479050000000003	4.08856	4.98683e-4	8.21424e-5	0.0202133	0.00812487
chr11	5424756	5424856	4897467	0	-	0.53	(0.515,0.57]	chr11	459187	775	INTRON	INTRON	HBG2:ENSG00000239920:HBE1:OR51B5	ENSG00000196565.15:ENSG00000239920.2:ENSG00000213931.7:ENSG00000167355.8	ENST00000380252.6:ENST00000380259.7:ENST00000292896.3:ENST00000380237.5:ENST00000420726.6:ENST00000420465.6:ENST00000415970.6:ENST00000418729.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:nonsense_mediated_decay:processed_transcript	5	113	2	3.08789	3.2477349999999996	3.40758	4.83127e-4	1.9086e-5	0.0199261	0.00354138
chr16	58539267	58539340	6495425	0	-	0.452055	(0.44,0.476]	chr16	628450	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CNOT1	ENSG00000125107.19	ENST00000317147.10:ENST00000569240.5:ENST00000567188.5:ENST00000568917.1:ENST00000563283.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	59	2	3.02366	3.24773	3.4718	0.00603307	0.00136358	0.0700813	0.0336321
chr12	123207063	123207163	5443797	0	-	0.19	[0,0.28]	chr12	520832	33	INTRON	INTRON	MPHOSPH9	ENSG00000051825.15	ENST00000606320.6:ENST00000541076.6:ENST00000545556.6:ENST00000302373.8:ENST00000539024.5:ENST00000539336.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	61	2	1.49274	3.2476849999999997	5.00263	0.0592697	0.013055	0.189982	0.093385
chr4	39730930	39731029	1953320	0	+	0.393939	(0.378,0.408]	chr4	195630	322	INTRON	INTRON	UBE2K	ENSG00000078140.14	ENST00000510934.5:ENST00000261427.10:ENST00000438068.6:ENST00000513231.5:ENST00000503368.5:ENST00000445950.2:ENST00000510719.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	223	2	3.15509	3.2476000000000003	3.34011	5.24475e-5	2.78186e-6	0.00631446	0.00107208
chr3	129399007	129399104	1815517	0	-	0.628866	(0.57,1]	chr3	182525	1	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	RPL32P3	ENSG00000251474.7	ENST00000510078.5:ENST00000687239.1:ENST00000514355.5:ENST00000515866.5:ENST00000499631.2:ENST00000506593.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	3	27	2	1.89351	3.24756	4.60161	0.0255126	0.00142229	0.133676	0.0340865
chr1	179345671	179345766	266898	0	+	0.526316	(0.515,0.57]	chr1	31178	2	INTRON	INTRON	SOAT1	ENSG00000057252.13	ENST00000540564.5:ENST00000539888.5:ENST00000367619.8	protein_coding	protein_coding	protein_coding	protein_coding	3	40	2	1.49871	3.24753	4.99635	0.0770828	8.06602e-4	0.196285	0.0258804
chr22	19085177	19085277	7551641	0	-	0.39	(0.378,0.408]	chr22	771897	166	INTRON	INTRON	DGCR2	ENSG00000070413.20	ENST00000537045.5:ENST00000545799.5:ENST00000263196.12:ENST00000389262.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	39	2	1.88729	3.2475	4.60771	0.0532327	0.00567576	0.162538	0.0678837
chr15	41301237	41301337	6004561	0	+	0.33	(0.32,0.35]	chr15	571273	33	EXON_LNCRNA	EXON_LNCRNA:INTRON	OIP5-AS1	ENSG00000247556.6	ENST00000500949.6:ENST00000501665.2	lncRNA	lncRNA	lncRNA	lncRNA	7	148	2	2.38936	3.24744	4.10552	6.8675e-4	1.19038e-4	0.0238954	0.0098845100000000009
chr15	90212942	90213041	6098217	0	+	0.565657	(0.515,0.57]	chr15	580425	61	INTRON	INTRON	SEMA4B	ENSG00000185033.15	ENST00000559322.5:ENST00000559300.5:ENST00000561085.1:ENST00000332496.10:ENST00000558895.5:ENST00000559792.5:ENST00000411539.7:ENST00000560089.5:ENST00000558051.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	88	2	3.02819	3.247385	3.46658	7.81057e-4	5.8755e-5	0.0257168	0.00629276
chr6	132770169	132770269	3222526	0	-	0.43	(0.408,0.44]	chr6	299575	9	UTR3	UTR3:EXON_MRNA	SLC18B1	ENSG00000146409.12	ENST00000275227.9:ENST00000647932.1:ENST00000650278.1:ENST00000650136.1:ENST00000650298.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	55	2	1.66945	3.2473750000000003	4.8253	0.0218479	0.0056738	0.123836	0.0653997
chr7	127917486	127917585	3405072	0	+	0.393939	(0.378,0.408]	chr7	318161	123	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000465900.5:ENST00000486037.1:ENST00000484767.5:ENST00000492840.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	162	2	2.87767	3.247375	3.61708	6.11057e-5	6.0456e-5	0.0068835500000000004	0.00641893
chr20	34509087	34509186	7260604	0	+	0.292929	(0.28,0.32]	chr20	737581	14	UTR3	UTR3:EXON_MRNA:INTRON	ITCH	ENSG00000078747.16	ENST00000374864.10:ENST00000670516.1:ENST00000665484.1:ENST00000664852.1:ENST00000660337.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	96	2	3.03222	3.24716	3.4621	0.00218379	9.72587e-4	0.0417893	0.0287313
chr12	110291122	110291221	5226197	0	+	0.555556	(0.515,0.57]	chr12	495234	80	INTRON	INTRON	ATP2A2	ENSG00000174437.18	ENST00000552636.2:ENST00000308664.10:ENST00000539276.7:ENST00000377685.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	177	2	3.1825	3.2470499999999998	3.3116	3.4584e-5	2.28376e-6	0.00496223	9.46989e-4
chr11	134203471	134203562	5054972	0	-	0.285714	(0.28,0.32]	chr11	477195	4	EXON_MRNA	EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NCAPD3	ENSG00000151503.14	ENST00000534548.7:ENST00000692494.1:ENST00000688672.1:ENST00000534532.7:ENST00000689387.1:ENST00000688263.1:ENST00000525964.7:ENST00000690149.1:ENST00000687480.1:ENST00000690743.1:ENST00000685324.1:ENST00000689205.1:ENST00000525432.2:ENST00000687155.1:ENST00000685119.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	30	2	2.46018	3.246815	4.03345	0.0704058	0.0375904	0.184298	0.156054
chr14	60736445	60736544	5736736	0	+	0.292929	(0.28,0.32]	chr14	544880	11	INTRON	INTRON	MNAT1	ENSG00000020426.11	ENST00000555545.1:ENST00000261245.9:ENST00000556764.5:ENST00000539616.6:ENST00000553354.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	30	2	2.46018	3.246815	4.03345	0.0704058	0.0375904	0.184298	0.156054
chr16	23491476	23491576	6464388	0	-	0.31	(0.28,0.32]	chr16	623877	4	SS5_PROX	SS5_PROX:INTRON	GGA2	ENSG00000103365.15	ENST00000309859.8:ENST00000567468.5:ENST00000567201.5:ENST00000570111.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	30	2	2.46018	3.246815	4.03345	0.0704058	0.0375904	0.184298	0.156054
chr18	12964235	12964335	6876322	0	+	0.3	(0.28,0.32]	chr18	681290	4	SS3_PROX	SS3_PROX:INTRON	SEH1L	ENSG00000085415.16	ENST00000262124.15:ENST00000399892.7:ENST00000585730.5:ENST00000589446.5:ENST00000587761.1:ENST00000588251.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	30	2	2.46018	3.246815	4.03345	0.0704058	0.0375904	0.184298	0.156054
chr3	37339424	37339523	1396738	0	+	0.313131	(0.28,0.32]	chr3	146438	13	INTRON	INTRON	GOLGA4	ENSG00000144674.17	ENST00000444882.5:ENST00000356847.8:ENST00000361924.7:ENST00000437131.1	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	2.46018	3.246815	4.03345	0.0704058	0.0375904	0.184298	0.156054
chr5	38972954	38973053	2604623	0	-	0.282828	(0.28,0.32]	chr5	247847	6	INTRON	INTRON	RICTOR	ENSG00000164327.13	ENST00000357387.8:ENST00000511516.5:ENST00000296782.9:ENST00000510711.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	30	2	2.46018	3.246815	4.03345	0.0704058	0.0375904	0.184298	0.156054
chr7	107323139	107323239	3610611	0	-	0.3	(0.28,0.32]	chr7	336666	244	INTRON	INTRON	COG5	ENSG00000164597.15	ENST00000297135.9:ENST00000347053.8:ENST00000393603.7	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	2.46018	3.246815	4.03345	0.0704058	0.0375904	0.184298	0.156054
chr14	96532958	96533053	5810483	0	+	0.294737	(0.28,0.32]	chr14	550920	4	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	PAPOLA	ENSG00000090060.19	ENST00000618976.2:ENST00000216277.13:ENST00000553689.5:ENST00000557320.5:ENST00000392990.6:ENST00000555626.5:ENST00000553461.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	97	2	2.56765	3.24679	3.92593	0.00835086	1.77822e-4	0.0774402	0.0116289
chr17	42735968	42736067	6774174	0	-	0.40404	(0.378,0.408]	chr17	667429	37	INTRON	INTRON	EZH1	ENSG00000108799.13	ENST00000415827.6:ENST00000428826.7:ENST00000592743.5:ENST00000588897.5:ENST00000590078.5:ENST00000585893.5:ENST00000586103.5:ENST00000585912.5:ENST00000591330.5:ENST00000586382.5:ENST00000586867.5:ENST00000586089.5:ENST00000593214.5:ENST00000592492.5:ENST00000590082.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	36	2	2.17608	3.2465349999999997	4.31699	0.0250408	0.0218783	0.123836	0.12011
chr7	73548399	73548498	3555231	0	-	0.383838	(0.378,0.408]	chr7	330846	44	INTRON	INTRON	BCL7B	ENSG00000106635.8	ENST00000223368.7:ENST00000411832.5:ENST00000482231.5:ENST00000454871.5:ENST00000463858.5:ENST00000448175.5:ENST00000455335.2:ENST00000464288.5:ENST00000416906.2:ENST00000493592.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	36	2	2.17608	3.2465349999999997	4.31699	0.0250408	0.0218783	0.123836	0.12011
chr9	130129926	130130024	4211734	0	+	0.408163	(0.378,0.408]	chr9	386097	13	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	GPR107	ENSG00000148358.20	ENST00000372406.5:ENST00000372410.7:ENST00000347136.11:ENST00000493417.5:ENST00000610997.1:ENST00000415344.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	36	2	2.17608	3.2465349999999997	4.31699	0.0250408	0.0218783	0.123836	0.12011
chr16	88747293	88747392	6539842	0	-	0.50505	(0.476,0.515]	chr16	633992	45	INTRON	INTRON	PIEZO1	ENSG00000103335.22	ENST00000301015.14	protein_coding	protein_coding	protein_coding	protein_coding	2	57	2	2.99852	3.246315	3.49411	0.0077575	9.23453e-4	0.0757402	0.0278392
chr19	13146187	13146285	7143106	0	-	0.326531	(0.32,0.35]	chr19	721102	4	INTRON	INTRON	STX10	ENSG00000104915.15	ENST00000587230.6:ENST00000343587.9:ENST00000591843.1:ENST00000589083.5:ENST00000242770.9:ENST00000587318.5:ENST00000593126.5:ENST00000440593.3:ENST00000588848.5:ENST00000591197.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	38	2	1.95271	3.246295	4.53988	0.0431213	0.0202178	0.162255	0.109913
chr4	143420042	143420141	2054915	0	+	0.333333	(0.32,0.35]	chr4	203766	21	INTRON	INTRON	GAB1	ENSG00000109458.9	ENST00000262995.8:ENST00000262994.9:ENST00000514639.5:ENST00000515366.5:ENST00000505913.5:ENST00000509992.1:ENST00000511836.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	38	2	1.95271	3.246295	4.53988	0.0431213	0.0202178	0.162255	0.109913
chr21	37437979	37438079	7406941	0	+	0.36	(0.35,0.378]	chr21	754891	72	INTRON	INTRON	DYRK1A	ENSG00000157540.22	ENST00000646523.1:ENST00000647425.1:ENST00000647188.2:ENST00000647504.1:ENST00000644942.1:ENST00000338785.8:ENST00000643624.1:ENST00000643551.1:ENST00000426672.6:ENST00000398960.7:ENST00000646548.1:ENST00000645424.1:ENST00000643854.1:ENST00000455097.6:ENST00000642309.1:ENST00000645774.1:ENST00000398956.2	protein_coding	protein_coding	protein_coding	protein_coding	3	45	2	1.92704	3.24627	4.5655	0.0228255	0.0155464	0.125469	0.100909
chr1	88815417	88815516	157095	0	+	0.181818	[0,0.28]	chr1	17116	13	INTRON	INTRON	PKN2	ENSG00000065243.20	ENST00000370521.8:ENST00000370513.9	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	2.29142	3.2462400000000002	4.20106	0.0695895	0.0592143	0.189982	0.184298
chr11	77812319	77812419	4995893	0	-	0.27	[0,0.28]	chr11	472047	473	INTRON	INTRON	RSF1	ENSG00000048649.14	ENST00000308488.11:ENST00000528095.5:ENST00000440064.2:ENST00000467567.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	32	2	2.29142	3.2462400000000002	4.20106	0.0695895	0.0592143	0.189982	0.184298
chr2	112649506	112649603	852098	0	+	0.206186	[0,0.28]	chr2	95574	14	INTRON	INTRON	SLC20A1	ENSG00000144136.11	ENST00000272542.8:ENST00000423633.5:ENST00000498224.5:ENST00000433924.5:ENST00000456264.5:ENST00000413135.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	32	2	2.29142	3.2462400000000002	4.20106	0.0695895	0.0592143	0.189982	0.184298
chr2	135076366	135076466	872910	0	+	0.24	[0,0.28]	chr2	97740	137	INTRON	INTRON	RAB3GAP1	ENSG00000115839.19	ENST00000539493.3:ENST00000688088.1:ENST00000693554.1:ENST00000690785.1:ENST00000689880.1:ENST00000264158.13:ENST00000690208.1:ENST00000691478.1:ENST00000686114.1:ENST00000685967.1:ENST00000442034.5:ENST00000687199.1:ENST00000691339.1:ENST00000688182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	32	2	2.29142	3.2462400000000002	4.20106	0.0695895	0.0592143	0.189982	0.184298
chr3	44506154	44506254	1676851	0	-	0.27	[0,0.28]	chr3	171167	27	INTRON	INTRON	ZNF852	ENSG00000178917.17	ENST00000436261.6:ENST00000489411.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	32	2	2.29142	3.2462400000000002	4.20106	0.0695895	0.0592143	0.189982	0.184298
chr5	138290138	138290238	2731780	0	-	0.26	[0,0.28]	chr5	257294	1	SS5_PROX	SS5_PROX:INTRON	CDC25C	ENSG00000158402.21	ENST00000323760.11:ENST00000415130.6:ENST00000648466.1:ENST00000513970.5:ENST00000514555.5:ENST00000514017.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	32	2	2.29142	3.2462400000000002	4.20106	0.0695895	0.0592143	0.189982	0.184298
chr17	75370891	75370991	6837450	0	-	0.35	(0.32,0.35]	chr17	675716	377	INTRON	INTRON	GRB2	ENSG00000177885.15	ENST00000316615.9:ENST00000316804.10:ENST00000392562.5:ENST00000392564.5:ENST00000392563.5:ENST00000648046.1:ENST00000578961.5:ENST00000582582.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	28	2	2.21917	3.246085	4.273	0.0641245	0.0368357	0.199279	0.138959
chr18	49160486	49160586	6969978	0	-	0.33	(0.32,0.35]	chr18	689767	412	INTRON	INTRON	DYM	ENSG00000141627.14	ENST00000675505.1:ENST00000269445.10:ENST00000442713.6	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	2.21917	3.246085	4.273	0.0641245	0.0368357	0.199279	0.138959
chr2	134183944	134184044	869504	0	+	0.35	(0.32,0.35]	chr2	97549	633	INTRON	INTRON	MGAT5	ENSG00000152127.9	ENST00000468758.1:ENST00000481801.5:ENST00000409645.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	28	2	2.21917	3.246085	4.273	0.0641245	0.0368357	0.199279	0.138959
chr2	199406721	199406821	1308737	0	-	0.34	(0.32,0.35]	chr2	136882	85	INTRON	INTRON	SATB2	ENSG00000119042.17	ENST00000614512.4:ENST00000417098.6:ENST00000260926.9:ENST00000443023.5:ENST00000428695.5:ENST00000457245.5:ENST00000484124.1:ENST00000440919.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	28	2	2.21917	3.246085	4.273	0.0641245	0.0368357	0.199279	0.138959
chr4	122283432	122283532	2033915	0	+	0.33	(0.32,0.35]	chr4	202068	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	KIAA1109	ENSG00000138688.17	ENST00000679879.1:ENST00000264501.8:ENST00000684987.1:ENST00000693420.1:ENST00000693334.1:ENST00000690536.1:ENST00000388738.8:ENST00000419325.5:ENST00000686093.1:ENST00000688248.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	28	2	2.21917	3.246085	4.273	0.0641245	0.0368357	0.199279	0.138959
chr7	103098738	103098831	3373090	0	+	0.333333	(0.32,0.35]	chr7	315689	3	UTR3	UTR3:EXON_MRNA	ARMC10	ENSG00000170632.14	ENST00000441711.6:ENST00000454559.5:ENST00000428183.6:ENST00000541300.5:ENST00000425331.5:ENST00000323735.10:ENST00000323716.8:ENST00000479145.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	28	2	2.21917	3.246085	4.273	0.0641245	0.0368357	0.199279	0.138959
chr4	67657877	67657977	2154020	0	-	0.4	(0.378,0.408]	chr4	212133	83	INTRON	INTRON	UBA6	ENSG00000033178.13	ENST00000322244.10	protein_coding	protein_coding	protein_coding	protein_coding	3	79	2	2.98295	3.24601	3.50907	0.00127828	9.47389e-4	0.0326395	0.0282007
chr8	102404679	102404779	4012676	0	-	0.53	(0.515,0.57]	chr8	367237	427	INTRON	INTRON	UBR5	ENSG00000104517.13	ENST00000520539.6:ENST00000220959.8:ENST00000521922.5	protein_coding	protein_coding	protein_coding	protein_coding	10	189	2	3.01201	3.24601	3.48001	1.20433e-5	4.18371e-6	0.00276023	0.00136409
chr7	105027529	105027629	3374751	0	+	0.29	(0.28,0.32]	chr7	315854	126	INTRON	INTRON	KMT2E	ENSG00000005483.22	ENST00000622386.2:ENST00000257745.9:ENST00000334884.9:ENST00000311117.8:ENST00000478990.5:ENST00000480368.5:ENST00000495267.5:ENST00000476671.5:ENST00000667857.1:ENST00000474203.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	135	2	2.65733	3.2459949999999997	3.83466	0.0061571	1.52477e-5	0.0676501	0.0029363
chr17	41780673	41780772	6769277	0	-	0.40404	(0.378,0.408]	chr17	666305	74	INTRON	INTRON	JUP	ENSG00000173801.17	ENST00000310706.9:ENST00000393930.5:ENST00000393931.8:ENST00000449889.5:ENST00000437187.5:ENST00000424457.5:ENST00000591690.5:ENST00000437369.5:ENST00000589036.1:ENST00000465293.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	60	2	2.84663	3.24596	3.64529	0.0133954	4.71767e-4	0.0946278	0.0196294
chr3	141896540	141896640	1526274	0	+	0.26	[0,0.28]	chr3	159005	186	INTRON	INTRON	ATP1B3	ENSG00000069849.11	ENST00000475483.5:ENST00000465172.5:ENST00000286371.8:ENST00000466678.5:ENST00000462082.1:ENST00000495216.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	50	2	1.85666	3.245945	4.63523	0.0660997	0.0139836	0.181924	0.10247
chr1	21711197	21711297	396125	0	-	0.43	(0.408,0.44]	chr1	47253	39	INTRON	INTRON	USP48	ENSG00000090686.16	ENST00000400301.5:ENST00000308271.14:ENST00000374732.7:ENST00000529637.5	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	2.51492	3.2458549999999997	3.97679	0.0329839	0.0299485	0.142135	0.133816
chr1	155689339	155689435	229514	0	+	0.4375	(0.408,0.44]	chr1	26992	2	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	DAP3	ENSG00000132676.16	ENST00000471642.6:ENST00000471214.5:ENST00000479076.1:ENST00000343043.7:ENST00000368336.10:ENST00000535183.5:ENST00000421487.6:ENST00000496863.5:ENST00000465375.5:ENST00000462002.5:ENST00000470830.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	29	2	2.51492	3.2458549999999997	3.97679	0.0329839	0.0299485	0.142135	0.133816
chr16	89356559	89356659	6542243	0	-	0.42	(0.408,0.44]	chr16	634215	129	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000647238.1:ENST00000644045.1:ENST00000643147.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	29	2	2.51492	3.2458549999999997	3.97679	0.0329839	0.0299485	0.142135	0.133816
chr17	81265357	81265457	6847799	0	-	0.43	(0.408,0.44]	chr17	677892	46	INTRON	INTRON	SLC38A10	ENSG00000157637.13	ENST00000374759.8:ENST00000542075.5:ENST00000288439.9:ENST00000546352.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	29	2	2.51492	3.2458549999999997	3.97679	0.0329839	0.0299485	0.142135	0.133816
chr3	129459851	129459951	1500040	0	+	0.41	(0.408,0.44]	chr3	156750	4	SS5_PROX	SS5_PROX:INTRON	IFT122	ENSG00000163913.14	ENST00000693654.1:ENST00000687461.1:ENST00000440957.7:ENST00000688129.1:ENST00000689313.1:ENST00000689801.1:ENST00000691583.1:ENST00000347300.6:ENST00000685282.1:ENST00000692242.1:ENST00000687377.1:ENST00000693489.1:ENST00000687645.1:ENST00000689643.1:ENST00000688970.1:ENST00000512157.6:ENST00000692228.1:ENST00000693114.1:ENST00000690862.1:ENST00000689332.1:ENST00000685921.1:ENST00000691770.1:ENST00000692985.1:ENST00000685447.1:ENST00000693162.1:ENST00000692391.1:ENST00000686531.1:ENST00000693129.1:ENST00000689796.1:ENST00000685939.1:ENST00000686830.1:ENST00000687791.1:ENST00000686473.1:ENST00000690723.1:ENST00000689871.1:ENST00000688504.1:ENST00000691964.1:ENST00000686375.1:ENST00000691733.1:ENST00000691705.1:ENST00000690209.1:ENST00000687864.1:ENST00000689819.1:ENST00000296266.7:ENST00000689492.1:ENST00000687398.1:ENST00000690663.1:ENST00000693588.1:ENST00000690677.1:ENST00000688664.1:ENST00000431818.8:ENST00000507564.5:ENST00000693233.1:ENST00000504021.6:ENST00000348417.7:ENST00000692901.1:ENST00000515783.6:ENST00000688020.1:ENST00000512220.5:ENST00000349441.6:ENST00000689005.1:ENST00000691641.1:ENST00000692321.1:ENST00000685087.1:ENST00000692728.1:ENST00000691360.1:ENST00000685189.1:ENST00000687766.1:ENST00000687845.1:ENST00000692508.1:ENST00000506507.5:ENST00000509815.1:ENST00000509195.5:ENST00000502304.5:ENST00000502456.5:ENST00000510524.5:ENST00000690617.1:ENST00000685811.1:ENST00000689384.1:ENST00000688392.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	29	2	2.51492	3.2458549999999997	3.97679	0.0329839	0.0299485	0.142135	0.133816
chr17	50722171	50722269	6626992	0	+	0.418367	(0.408,0.44]	chr17	647177	2	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	LUC7L3:ENSG00000278963	ENSG00000108848.16:ENSG00000278963.1	ENST00000625349.2:ENST00000508045.5:ENST00000508218.5:ENST00000509335.5:ENST00000506686.5:ENST00000393227.6:ENST00000504563.6:ENST00000505658.6:ENST00000240304.5:ENST00000508482.5:ENST00000505619.5:ENST00000510984.5:ENST00000507200.5:ENST00000623774.1	protein_coding	protein_coding	protein_coding:TEC	protein_coding:retained_intron:nonsense_mediated_decay:TEC	12	282	2	2.72467	3.24575	3.76683	8.734e-5	9.99461e-8	0.00840177	1.37836e-4
chr19	8402759	8402841	7010475	0	+	0.512195	(0.476,0.515]	chr19	696088	3	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	RAB11B	ENSG00000185236.12	ENST00000328024.11:ENST00000601897.1:ENST00000594216.1	protein_coding	protein_coding	protein_coding	protein_coding	2	58	2	3.07422	3.24575	3.41728	0.00506023	0.00165726	0.0646039	0.0369207
chr3	48716957	48717057	1689707	0	-	0.51	(0.476,0.515]	chr3	172882	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	IP6K2	ENSG00000068745.15	ENST00000328631.10:ENST00000449563.5:ENST00000413654.5:ENST00000443853.5:ENST00000437427.5:ENST00000412850.5:ENST00000454335.5:ENST00000340879.8:ENST00000432678.6:ENST00000433104.2:ENST00000416707.1:ENST00000431721.6:ENST00000449610.5:ENST00000413298.5:ENST00000446860.5:ENST00000412795.5:ENST00000417896.1:ENST00000443964.1:ENST00000436134.5:ENST00000440424.5:ENST00000434860.1:ENST00000424035.1:ENST00000476645.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	58	2	3.07422	3.24575	3.41728	0.00506023	0.00165726	0.0646039	0.0369207
chr12	104298785	104298885	5210128	0	+	0.3	(0.28,0.32]	chr12	493210	73	INTRON	INTRON	TXNRD1	ENSG00000198431.17	ENST00000525566.6:ENST00000526266.5:ENST00000503506.6:ENST00000526691.5:ENST00000531691.5:ENST00000526390.5:ENST00000531689.5:ENST00000529546.5:ENST00000529751.1:ENST00000528079.6:ENST00000526580.5:ENST00000529784.5:ENST00000524698.5:ENST00000527688.5:ENST00000527335.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	40	2	1.90263	3.24569	4.58875	0.0503272	0.0230574	0.17488	0.118056
chr6	167828731	167828831	3034355	0	+	0.29	(0.28,0.32]	chr6	282711	4	INTRON	INTRON	AFDN	ENSG00000130396.21	ENST00000683244.1:ENST00000400825.8:ENST00000351017.9:ENST00000344191.8:ENST00000392112.5:ENST00000392108.7:ENST00000400824.8:ENST00000400822.7:ENST00000447894.6:ENST00000366809.6:ENST00000366806.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	40	2	1.90263	3.24569	4.58875	0.0503272	0.0230574	0.17488	0.118056
chr22	18561035	18561134	7550962	0	-	0.383838	(0.378,0.408]	chr22	771829	81	INTRON	INTRON	PI4KAP1	ENSG00000274602.5	ENST00000612500.4:ENST00000611748.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	2	60	2	3.17089	3.2455249999999998	3.32016	0.00357279	0.00268328	0.0548435	0.0464781
chr6	136289312	136289412	3231123	0	-	0.66	(0.57,1]	chr6	300409	2	SS5_PROX	SS5_PROX:INTRON	BCLAF1	ENSG00000029363.17	ENST00000640069.1:ENST00000531224.6:ENST00000353331.8:ENST00000527536.5:ENST00000527613.5:ENST00000530767.5:ENST00000527759.5:ENST00000534269.5:ENST00000532384.5:ENST00000530429.5:ENST00000628517.2:ENST00000529826.5:ENST00000528229.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	146	2	2.70373	3.2455	3.78727	7.29827e-6	5.73525e-8	0.00191858	9.84221e-5
chr4	39724043	39724142	1953251	0	+	0.424242	(0.408,0.44]	chr4	195630	253	INTRON	INTRON	UBE2K	ENSG00000078140.14	ENST00000510934.5:ENST00000261427.10:ENST00000438068.6:ENST00000513231.5:ENST00000503368.5:ENST00000445950.2:ENST00000510719.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	172	2	2.87402	3.245425	3.61683	5.47818e-5	2.9321e-5	0.00651589	0.00430415
chr1	23772010	23772110	401236	0	-	0.4	(0.378,0.408]	chr1	48115	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ELOA-AS1	ENSG00000236810.7	ENST00000655402.1:ENST00000427796.6:ENST00000686609.1:ENST00000664563.2:ENST00000652963.1:ENST00000692026.1:ENST00000447961.1:ENST00000689374.1:ENST00000687867.1	lncRNA	lncRNA	lncRNA	lncRNA	1	31	2	2.66785	3.2453950000000003	3.82294	0.044228	0.0224639	0.162255	0.11692
chr1	109412772	109412870	521171	0	-	0.387755	(0.378,0.408]	chr1	61240	7	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	PSMA5	ENSG00000143106.13	ENST00000271308.9:ENST00000490870.5:ENST00000538610.5:ENST00000484563.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	31	2	2.66785	3.2453950000000003	3.82294	0.044228	0.0224639	0.162255	0.11692
chr3	138295991	138296091	1515065	0	+	0.39	(0.378,0.408]	chr3	158417	2	UTR3	UTR3:EXON_MRNA	ARMC8	ENSG00000114098.18	ENST00000538260.5:ENST00000481646.5:ENST00000469044.6:ENST00000491704.5:ENST00000461822.5:ENST00000460495.5:ENST00000466762.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	31	2	2.66785	3.2453950000000003	3.82294	0.044228	0.0224639	0.162255	0.11692
chr14	30938718	30938817	5856992	0	-	0.262626	[0,0.28]	chr14	556481	17	INTRON	INTRON	STRN3	ENSG00000196792.12	ENST00000355683.9:ENST00000357479.10:ENST00000555358.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	45	2	2.10688	3.245375	4.38387	0.0501911	0.0307985	0.156383	0.143385
chr11	46841227	46841326	4948716	0	-	0.444444	(0.44,0.476]	chr11	463857	145	INTRON	INTRON	CKAP5	ENSG00000175216.15	ENST00000529230.6:ENST00000312055.9:ENST00000525248.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	187	2	3.16438	3.245355	3.32633	5.01735e-5	8.72893e-6	0.00612726	0.00212305
chr7	132954829	132954929	3644611	0	-	0.49	(0.476,0.515]	chr7	338848	675	INTRON	INTRON	CHCHD3	ENSG00000106554.13	ENST00000262570.10:ENST00000448878.6:ENST00000496427.5:ENST00000423635.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	53	2	1.33919	3.2453100000000004	5.15143	0.06316	0.00166579	0.197199	0.0369207
chr1	111646554	111646654	185383	0	+	0.58	(0.57,1]	chr1	20514	186	INTRON	INTRON	RAP1A	ENSG00000116473.15	ENST00000356415.5:ENST00000687939.1:ENST00000369709.4:ENST00000494982.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	50	2	2.66249	3.24525	3.82801	9.0016e-4	9.41714e-5	0.0277303	0.00813008
chr2	182992952	182993051	1285566	0	-	0.252525	[0,0.28]	chr2	135394	34	INTRON	INTRON	NCKAP1	ENSG00000061676.15	ENST00000361354.9:ENST00000360982.2	protein_coding	protein_coding	protein_coding	protein_coding	3	110	2	3.18349	3.2452199999999998	3.30695	0.00469836	6.16875e-4	0.0600108	0.0223951
chr19	5100649	5100749	7004747	0	+	0.46	(0.44,0.476]	chr19	694855	178	INTRON	INTRON	KDM4B	ENSG00000127663.15	ENST00000159111.9:ENST00000611640.4:ENST00000381759.8:ENST00000536461.5:ENST00000589104.5:ENST00000588961.1:ENST00000588361.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	57	2	3.07862	3.24519	3.41176	0.0060153	0.00130987	0.0674604	0.0333932
chr2	144412213	144412313	1240710	0	-	0.46	(0.44,0.476]	chr2	131684	68	INTRON	INTRON	ZEB2	ENSG00000169554.23	ENST00000636471.1:ENST00000627532.3:ENST00000638128.1:ENST00000637304.1:ENST00000636179.1:ENST00000636820.1:ENST00000637045.1:ENST00000636413.1:ENST00000638007.1:ENST00000638087.1:ENST00000419938.5:ENST00000409487.7:ENST00000440875.6:ENST00000636732.2:ENST00000636026.2:ENST00000675069.1:ENST00000689298.1:ENST00000539609.7:ENST00000558170.6:ENST00000303660.8:ENST00000427902.5:ENST00000637267.2:ENST00000392861.6:ENST00000431672.4:ENST00000409211.5:ENST00000465308.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	57	2	3.07862	3.24519	3.41176	0.0060153	0.00130987	0.0674604	0.0333932
chr6	143847305	143847402	2981437	0	+	0.391753	(0.378,0.408]	chr6	279364	7	INTRON	INTRON	LTV1	ENSG00000135521.9	ENST00000367576.6	protein_coding	protein_coding	protein_coding	protein_coding	2	61	2	3.05393	3.24519	3.43645	0.00551532	0.00171162	0.0672816	0.037419
chr17	49033069	49033168	6624966	0	+	0.393939	(0.378,0.408]	chr17	646620	7	INTRON	INTRON	IGF2BP1	ENSG00000159217.10	ENST00000290341.8:ENST00000431824.2:ENST00000515586.5:ENST00000499130.6:ENST00000505562.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	79	2	2.94613	3.245095	3.54406	0.00112461	0.00110718	0.0308177	0.0306086
chr10	96862214	96862314	4503265	0	+	0.35	(0.32,0.35]	chr10	414536	34	INTRON	INTRON	LCOR	ENSG00000196233.14	ENST00000676067.1:ENST00000676257.1:ENST00000676187.1:ENST00000675151.1:ENST00000675687.1:ENST00000675251.1:ENST00000676123.1:ENST00000371103.8:ENST00000675471.1:ENST00000421806.4:ENST00000675902.1:ENST00000540664.6:ENST00000676414.1:ENST00000675537.1:ENST00000675117.1:ENST00000675125.1:ENST00000356016.7:ENST00000371097.8:ENST00000676381.1:ENST00000674796.1:ENST00000674725.1:ENST00000675971.1:ENST00000676373.1:ENST00000676314.1:ENST00000675915.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	66	2	2.99125	3.24497	3.49869	0.00958447	0.00108004	0.0820838	0.0300133
chr9	91944509	91944609	4285211	0	-	0.34	(0.32,0.35]	chr9	393926	202	INTRON	INTRON	ROR2	ENSG00000169071.15	ENST00000375715.5:ENST00000375708.4:ENST00000495386.5:ENST00000546883.1:ENST00000476440.1:ENST00000493846.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	66	2	2.99125	3.24497	3.49869	0.00958447	0.00108004	0.0820838	0.0300133
chr7	23409773	23409872	3503056	0	-	0.282828	(0.28,0.32]	chr7	326892	43	INTRON	INTRON	IGF2BP3	ENSG00000136231.14	ENST00000258729.8:ENST00000421467.6:ENST00000468263.5:ENST00000479504.5:ENST00000466809.6:ENST00000491719.5:ENST00000465058.5:ENST00000469723.5:ENST00000476938.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	72	2	2.87382	3.24491	3.616	0.014868	7.42427e-4	0.0989021	0.024913
chr6	35918864	35918964	3088804	0	-	0.33	(0.32,0.35]	chr6	288898	135	INTRON	INTRON	SRPK1	ENSG00000096063.16	ENST00000373825.7:ENST00000423325.6:ENST00000346162.10:ENST00000361690.7:ENST00000510290.5:ENST00000508473.5:ENST00000512445.5:ENST00000513367.1:ENST00000507909.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	32	2	2.4458	3.24472	4.04364	0.0425977	0.034181	0.148082	0.146815
chr2	110661045	110661134	1206689	0	-	0.314607	(0.28,0.32]	chr2	128689	3	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	BUB1	ENSG00000169679.15	ENST00000302759.11:ENST00000535254.6:ENST00000409311.5:ENST00000466333.5:ENST00000666956.1:ENST00000465029.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	96	2	2.91124	3.2446599999999997	3.57808	0.00165124	0.00141407	0.0375241	0.0340865
chr17	58003018	58003118	6800007	0	-	0.29	(0.28,0.32]	chr17	671424	22	UTR3	UTR3:EXON_MRNA:INTRON	ENSG00000266086:SRSF1	ENSG00000266086.3:ENSG00000136450.13	ENST00000578794.2:ENST00000665125.1:ENST00000258962.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	134	2	2.13258	3.24465	4.35672	0.00884547	1.86734e-5	0.0794248	0.00330057
chr12	110469418	110469518	5226834	0	+	0.43	(0.408,0.44]	chr12	495331	4	SS5_PROX	SS5_PROX:INTRON	FAM216A	ENSG00000204856.12	ENST00000538285.6:ENST00000548869.1:ENST00000548449.1:ENST00000377673.10	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	30	2	2.6542	3.24457	3.83494	0.0411442	0.0227514	0.161534	0.117618
chr17	48935630	48935702	6791677	0	-	0.430556	(0.408,0.44]	chr17	670091	1	SS5_PROX	SS5_PROX:INTRON	SNF8	ENSG00000159210.10	ENST00000502492.6:ENST00000510558.6:ENST00000509995.5:ENST00000290330.7:ENST00000514089.5:ENST00000509989.5:ENST00000573795.5:ENST00000576353.5:ENST00000514929.1:ENST00000507302.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	30	2	2.6542	3.24457	3.83494	0.0411442	0.0227514	0.161534	0.117618
chr7	12341283	12341374	3484779	0	-	0.417582	(0.408,0.44]	chr7	325828	5	INTRON	INTRON	VWDE	ENSG00000146530.15	ENST00000275358.8:ENST00000452576.6:ENST00000521169.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	30	2	2.6542	3.24457	3.83494	0.0411442	0.0227514	0.161534	0.117618
chr8	140631113	140631213	4076522	0	-	0.45	(0.44,0.476]	chr8	370289	39	INTRON	INTRON	AGO2	ENSG00000123908.12	ENST00000220592.10:ENST00000519980.5:ENST00000523609.5:ENST00000517293.5:ENST00000518019.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	102	2	3.11801	3.2444249999999997	3.37084	6.56773e-4	1.26042e-4	0.0233791	0.00959902
chr11	65081773	65081872	4966594	0	-	0.383838	(0.378,0.408]	chr11	468000	16	INTRON	INTRON	CDCA5	ENSG00000146670.10	ENST00000533015.5:ENST00000275517.8:ENST00000524733.5:ENST00000404147.3:ENST00000479032.6:ENST00000531401.5:ENST00000527430.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	129	2	2.92764	3.2443400000000002	3.56104	3.01906e-4	8.22789e-5	0.0155054	0.00812487
chr9	89311194	89311292	4152959	0	+	0.612245	(0.57,1]	chr9	378770	1	UTR5	UTR5:EXON_MRNA	CKS2	ENSG00000123975.5	ENST00000314355.7	protein_coding	protein_coding	protein_coding	protein_coding	15	178	2	3.18424	3.244075	3.30391	2.79631e-6	1.49971e-8	0.00118618	4.28169e-5
chr17	66350645	66350745	6662778	0	+	0.51	(0.476,0.515]	chr17	650324	107	INTRON	INTRON	PRKCA	ENSG00000154229.12	ENST00000413366.8:ENST00000578063.5:ENST00000284384.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	124	2	2.84089	3.2440499999999997	3.64721	4.67054e-4	4.2033e-5	0.0195793	0.00550232
chr19	1439248	1439337	6995405	0	+	0.47191	(0.44,0.476]	chr19	693237	5	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPS15	ENSG00000115268.10	ENST00000233609.8:ENST00000586686.6:ENST00000592588.7:ENST00000591032.1:ENST00000592623.5:ENST00000589656.6:ENST00000586656.5:ENST00000591804.6:ENST00000593052.5:ENST00000592700.2:ENST00000586096.3:ENST00000585665.2:ENST00000617694.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	173	2	3.2379	3.243905	3.24991	4.57551e-5	2.70827e-5	0.00551647	0.00430583
chr1	167955852	167955952	248681	0	+	0.53	(0.515,0.57]	chr1	29542	36	INTRON	INTRON	DCAF6	ENSG00000143164.16	ENST00000450548.5:ENST00000470919.5:ENST00000432587.6:ENST00000367843.7:ENST00000470721.5:ENST00000367840.4:ENST00000312263.10:ENST00000455334.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	100	2	2.47855	3.2439	4.00925	5.02001e-4	7.7342e-5	0.020217099999999998	0.00784644
chr17	49031409	49031509	6624949	0	+	0.33	(0.32,0.35]	chr17	646615	1	SS3_PROX	SS3_PROX:INTRON	IGF2BP1	ENSG00000159217.10	ENST00000290341.8:ENST00000431824.2:ENST00000515586.5:ENST00000499130.6:ENST00000505562.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	90	2	2.71053	3.24381	3.77709	0.00346747	5.24715e-4	0.0539802	0.0210958
chr1	151071434	151071526	224158	0	+	0.467391	(0.44,0.476]	chr1	25526	1	INTRON	INTRON	GABPB2	ENSG00000143458.12	ENST00000462520.5:ENST00000368918.8:ENST00000489549.5:ENST00000486076.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	28	2	2.38219	3.2437950000000004	4.1054	0.045456	0.0220205	0.149888	0.123836
chr10	48397315	48397415	4431897	0	+	0.45	(0.44,0.476]	chr10	408575	323	INTRON	INTRON	MAPK8	ENSG00000107643.17	ENST00000395611.7:ENST00000432379.5:ENST00000374189.6:ENST00000429041.6:ENST00000374179.8:ENST00000426557.5:ENST00000476134.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	28	2	2.38219	3.2437950000000004	4.1054	0.045456	0.0220205	0.149888	0.123836
chr18	51079862	51079962	6902139	0	+	0.46	(0.44,0.476]	chr18	683904	15	UTR3	UTR3:EXON_MRNA	SMAD4	ENSG00000141646.15	ENST00000398417.6:ENST00000342988.8:ENST00000684953.1:ENST00000688574.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	28	2	2.38219	3.2437950000000004	4.1054	0.045456	0.0220205	0.149888	0.123836
chr19	32632092	32632190	7169175	0	-	0.459184	(0.44,0.476]	chr19	724418	2	INTRON	INTRON	ANKRD27	ENSG00000105186.16	ENST00000306065.9:ENST00000591100.6	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	2.38219	3.2437950000000004	4.1054	0.045456	0.0220205	0.149888	0.123836
chr2	73388785	73388884	808558	0	+	0.454545	(0.44,0.476]	chr2	90516	22	INTRON	INTRON	ALMS1	ENSG00000116127.20	ENST00000484298.5:ENST00000613296.6:ENST00000614410.4:ENST00000682889.1:ENST00000682675.1:ENST00000684148.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	28	2	2.38219	3.2437950000000004	4.1054	0.045456	0.0220205	0.149888	0.123836
chr7	23420219	23420319	3503163	0	-	0.45	(0.44,0.476]	chr7	326906	10	INTRON	INTRON	IGF2BP3	ENSG00000136231.14	ENST00000258729.8:ENST00000421467.6:ENST00000468263.5:ENST00000479504.5:ENST00000466809.6:ENST00000491719.5:ENST00000465058.5:ENST00000469723.5:ENST00000476938.5:ENST00000468005.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	28	2	2.38219	3.2437950000000004	4.1054	0.045456	0.0220205	0.149888	0.123836
chr4	6788036	6788136	1921641	0	+	0.49	(0.476,0.515]	chr4	192985	48	INTRON	INTRON	KIAA0232	ENSG00000170871.12	ENST00000503278.1:ENST00000508423.1:ENST00000307659.6:ENST00000425103.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	122	2	2.84608	3.243765	3.64145	6.05245e-4	2.67082e-5	0.0226059	0.00407562
chr1	171545078	171545178	253827	0	+	0.33	(0.32,0.35]	chr1	30181	2	SS3_PROX	SS3_PROX:INTRON	PRRC2C	ENSG00000117523.18	ENST00000647382.2:ENST00000367742.7:ENST00000338920.8:ENST00000426496.6:ENST00000495585.1	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	2.57263	3.243745	3.91486	0.0450361	0.0312297	0.163255	0.13151
chr1	246629600	246629700	350619	0	+	0.34	(0.32,0.35]	chr1	40508	76	INTRON	INTRON	CNST	ENSG00000162852.14	ENST00000483271.1:ENST00000366513.9:ENST00000366512.7:ENST00000366511.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	33	2	2.57263	3.243745	3.91486	0.0450361	0.0312297	0.163255	0.13151
chr17	48842754	48842847	6624065	0	+	0.451613	(0.44,0.476]	chr17	646432	2	INTRON	INTRON	CALCOCO2	ENSG00000136436.15	ENST00000503463.5:ENST00000509507.5:ENST00000448105.6:ENST00000258947.8:ENST00000508679.5:ENST00000416445.6:ENST00000513119.5:ENST00000509415.5:ENST00000570513.5:ENST00000575560.5:ENST00000576582.5:ENST00000505071.5:ENST00000507076.1:ENST00000502761.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	57	2	3.02751	3.24354	3.45957	0.00715968	0.00106385	0.0723634	0.0300133
chr17	81892503	81892603	6691434	0	+	0.47	(0.44,0.476]	chr17	654249	4	SS5_PROX	SS5_PROX:INTRON	ANAPC11	ENSG00000141552.18	ENST00000571570.5:ENST00000572639.5:ENST00000612413.4:ENST00000579978.5:ENST00000571024.6:ENST00000344877.10:ENST00000577425.5:ENST00000582222.5:ENST00000574924.6:ENST00000572851.6:ENST00000357385.7:ENST00000584314.5:ENST00000571874.6:ENST00000578550.5:ENST00000577747.5:ENST00000579133.5:ENST00000392376.7:ENST00000584197.5:ENST00000583839.1	protein_coding	protein_coding	protein_coding	protein_coding	2	57	2	3.02751	3.24354	3.45957	0.00715968	0.00106385	0.0723634	0.0300133
chr3	9997724	9997824	1362079	0	+	0.47	(0.44,0.476]	chr3	143402	35	INTRON	INTRON	EMC3-AS1	ENSG00000180385.9	ENST00000692142.1:ENST00000366264.6:ENST00000693066.1:ENST00000326237.3:ENST00000440568.1:ENST00000424904.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	3	77	2	2.73781	3.24353	3.74925	0.00276493	4.08974e-4	0.04867	0.0185763
chr17	30126659	30126759	6587487	0	+	0.58	(0.57,1]	chr17	640557	81	INTRON	INTRON	NSRP1	ENSG00000126653.18	ENST00000540900.7:ENST00000584423.5:ENST00000612959.4:ENST00000247026.10:ENST00000577289.6:ENST00000584154.5:ENST00000394826.8:ENST00000479218.6:ENST00000475652.5:ENST00000584317.5:ENST00000583301.5:ENST00000585881.5:ENST00000467446.6:ENST00000580103.6:ENST00000581048.5:ENST00000588614.1:ENST00000589608.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	42	2	3.13943	3.2434700000000003	3.34751	0.00122677	3.01503e-4	0.0320791	0.0155054
chr1	1674375	1674473	360775	0	-	0.295918	(0.28,0.32]	chr1	41997	24	INTRON	INTRON	SLC35E2B	ENSG00000189339.12	ENST00000614300.4:ENST00000617444.5:ENST00000611123.1:ENST00000481276.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	179	2	2.85561	3.24345	3.63129	2.33841e-4	1.07432e-4	0.0135358	0.00929213
chr1	203821464	203821563	296942	0	+	0.393939	(0.378,0.408]	chr1	34151	24	INTRON	INTRON	ZC3H11A:ZBED6	ENSG00000058673.17:ENSG00000257315.3	ENST00000367210.3:ENST00000453771.5:ENST00000638800.1:ENST00000367214.5:ENST00000639812.1:ENST00000367212.7:ENST00000332127.8:ENST00000550078.2:ENST00000495527.5:ENST00000640465.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	79	2	3.08809	3.243405	3.39872	0.0019852	5.71831e-4	0.0404516	0.0217398
chr1	154252248	154252344	227855	0	+	0.458333	(0.44,0.476]	chr1	26303	2	INTRON	INTRON	UBAP2L	ENSG00000143569.19	ENST00000343815.10:ENST00000271877.11:ENST00000613315.4:ENST00000428931.6:ENST00000361546.6	protein_coding	protein_coding	protein_coding	protein_coding	3	76	2	3.05373	3.2433899999999998	3.43305	0.00159668	6.56725e-4	0.0364566	0.0232396
chr18	9602819	9602918	6946202	0	-	0.343434	(0.32,0.35]	chr18	687041	32	INTRON	INTRON	PPP4R1	ENSG00000154845.16	ENST00000400555.7:ENST00000400556.8:ENST00000285124.12:ENST00000578875.5:ENST00000578178.5:ENST00000583903.5:ENST00000584074.5:ENST00000579415.5:ENST00000581250.5:ENST00000580745.5:ENST00000580182.5:ENST00000582240.5:ENST00000581835.1:ENST00000583092.1:ENST00000577779.1:ENST00000580283.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	137	2	2.02305	3.2433899999999998	4.46373	0.00783414	7.57263e-6	0.076075	0.00196742
chr19	11560116	11560210	7017636	0	+	0.446809	(0.44,0.476]	chr19	697661	1	INTRON	INTRON	ZNF627	ENSG00000198551.10	ENST00000593279.5:ENST00000585493.5:ENST00000588651.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	76	2	2.9044	3.243295	3.58219	0.00132926	8.57842e-4	0.0335085	0.0267428
chr2	58186807	58186904	1126193	0	-	0.360825	(0.35,0.378]	chr2	120903	30	INTRON	INTRON	FANCL	ENSG00000115392.13	ENST00000696400.1:ENST00000403295.8:ENST00000696492.1:ENST00000427708.7:ENST00000696314.1:ENST00000696315.1:ENST00000696454.1:ENST00000696508.1:ENST00000696548.1:ENST00000696542.1:ENST00000696432.1:ENST00000696319.1:ENST00000403676.6:ENST00000696433.1:ENST00000696434.1:ENST00000696499.1:ENST00000696564.1:ENST00000402135.8:ENST00000696546.1:ENST00000233741.9:ENST00000696316.1:ENST00000696378.1:ENST00000696435.1:ENST00000696493.1:ENST00000696543.1:ENST00000696544.1:ENST00000696545.1:ENST00000696565.1:ENST00000696620.1:ENST00000696621.1:ENST00000696635.1:ENST00000696364.1:ENST00000696634.1:ENST00000696619.1:ENST00000696317.1:ENST00000696622.1:ENST00000696467.1:ENST00000696547.1:ENST00000449070.6:ENST00000696305.1:ENST00000417361.2:ENST00000696338.1:ENST00000696361.1:ENST00000696318.1:ENST00000696371.1:ENST00000696409.1:ENST00000696410.1:ENST00000696455.1:ENST00000696468.1:ENST00000696527.1:ENST00000696567.1:ENST00000696324.1:ENST00000696566.1:ENST00000696623.1:ENST00000446381.6:ENST00000696469.1:ENST00000696624.1:ENST00000696411.1:ENST00000696475.1:ENST00000470506.2:ENST00000696358.1:ENST00000696373.1:ENST00000696394.1:ENST00000696320.1:ENST00000696339.1:ENST00000696395.1:ENST00000696341.1:ENST00000696340.1:ENST00000696374.1:ENST00000696396.1:ENST00000696342.1:ENST00000696325.1:ENST00000696399.1:ENST00000696398.1:ENST00000696306.1:ENST00000696397.1:ENST00000696360.1:ENST00000696344.1:ENST00000696343.1:ENST00000696637.1:ENST00000696362.1:ENST00000696528.1:ENST00000696497.1:ENST00000696326.1:ENST00000696638.1:ENST00000696625.1:ENST00000696510.1:ENST00000696438.1:ENST00000696496.1:ENST00000696509.1:ENST00000696569.1:ENST00000696457.1:ENST00000696458.1:ENST00000696473.1:ENST00000696495.1:ENST00000696415.1:ENST00000696472.1:ENST00000696494.1:ENST00000696363.1:ENST00000696414.1:ENST00000696529.1:ENST00000696471.1:ENST00000696459.1:ENST00000696498.1:ENST00000696532.1:ENST00000696416.1:ENST00000696530.1:ENST00000696460.1:ENST00000696570.1:ENST00000696531.1:ENST00000696307.1:ENST00000696401.1:ENST00000696345.1:ENST00000696377.1:ENST00000696417.1:ENST00000696594.1:ENST00000696595.1:ENST00000696379.1:ENST00000696346.1:ENST00000696380.1:ENST00000696347.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	140	2	2.00273	3.2431900000000002	4.48365	0.00416915	1.35259e-5	0.0591344	0.0029105
chr16	85557662	85557762	6415408	0	+	0.59	(0.57,1]	chr16	615470	9	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	12	147	2	3.07697	3.243145	3.40932	2.33735e-6	1.40316e-7	9.61101e-4	1.78596e-4
chr19	15263924	15264017	7146708	0	-	0.419355	(0.408,0.44]	chr19	721917	4	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	BRD4	ENSG00000141867.19	ENST00000679869.1:ENST00000263377.6:ENST00000371835.8:ENST00000360016.9:ENST00000594841.5:ENST00000602230.1:ENST00000678800.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	50	2	1.8865	3.2431449999999997	4.59979	0.0148842	0.0109537	0.107116	0.0873034
chr1	212777171	212777271	634634	0	-	0.47	(0.44,0.476]	chr1	74955	105	INTRON	INTRON	NSL1	ENSG00000117697.15	ENST00000366977.8:ENST00000366978.5:ENST00000366976.3:ENST00000626725.1	protein_coding	protein_coding	protein_coding	protein_coding	6	59	2	1.4592	3.243115	5.02703	0.0342963	0.00278015	0.147255	0.0469265
chr1	40404744	40404843	81755	0	+	0.323232	(0.32,0.35]	chr1	10562	75	INTRON	INTRON	SMAP2	ENSG00000084070.12	ENST00000435168.6:ENST00000372718.8:ENST00000372708.5:ENST00000614549.4:ENST00000539317.2	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	2.31405	3.24293	4.17181	0.0517107	0.04531	0.176696	0.149888
chr12	76535737	76535833	5372141	0	-	0.34375	(0.32,0.35]	chr12	512497	11	INTRON	INTRON	OSBPL8	ENSG00000091039.17	ENST00000261183.8:ENST00000393249.6:ENST00000611266.4:ENST00000393250.8:ENST00000547540.5:ENST00000553139.5:ENST00000549570.5:ENST00000550628.5:ENST00000549646.5:ENST00000551927.5:ENST00000547544.5:ENST00000552178.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	28	2	2.31405	3.24293	4.17181	0.0517107	0.04531	0.176696	0.149888
chr12	108534761	108534858	5405479	0	-	0.340206	(0.32,0.35]	chr12	515857	21	INTRON	INTRON	SART3	ENSG00000075856.12	ENST00000546815.6:ENST00000651280.1:ENST00000228284.8:ENST00000546728.5:ENST00000431469.6:ENST00000547528.5:ENST00000546808.5:ENST00000548077.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	28	2	2.31405	3.24293	4.17181	0.0517107	0.04531	0.176696	0.149888
chr16	21903546	21903646	6462307	0	-	0.34	(0.32,0.35]	chr16	623566	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	SMG1P4	ENSG00000185710.9	ENST00000523028.5:ENST00000381448.8	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	1	28	2	2.31405	3.24293	4.17181	0.0517107	0.04531	0.176696	0.149888
chr17	4279502	4279602	6711483	0	-	0.33	(0.32,0.35]	chr17	657690	66	INTRON	INTRON	UBE2G1	ENSG00000132388.13	ENST00000396981.7:ENST00000572484.5:ENST00000574633.5:ENST00000571980.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	28	2	2.31405	3.24293	4.17181	0.0517107	0.04531	0.176696	0.149888
chr2	27034523	27034609	716503	0	+	0.348837	(0.32,0.35]	chr2	82748	4	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	TMEM214	ENSG00000119777.20	ENST00000495312.1:ENST00000321326.11:ENST00000435172.6:ENST00000238788.14:ENST00000404032.7:ENST00000478980.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	28	2	2.31405	3.24293	4.17181	0.0517107	0.04531	0.176696	0.149888
chr2	84446656	84446754	1168713	0	-	0.336735	(0.32,0.35]	chr2	124441	29	INTRON	INTRON	SUCLG1	ENSG00000163541.12	ENST00000393868.7:ENST00000651342.1:ENST00000483605.5:ENST00000442240.5:ENST00000491642.5:ENST00000430989.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	28	2	2.31405	3.24293	4.17181	0.0517107	0.04531	0.176696	0.149888
chr22	41104243	41104342	7521610	0	+	0.343434	(0.32,0.35]	chr22	768515	108	INTRON	INTRON	EP300	ENSG00000100393.14	ENST00000263253.9:ENST00000674155.1	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	2.31405	3.24293	4.17181	0.0517107	0.04531	0.176696	0.149888
chr7	77804264	77804364	3344004	0	+	0.33	(0.32,0.35]	chr7	311483	49	INTRON	INTRON	PHTF2	ENSG00000006576.17	ENST00000422959.7:ENST00000416283.6:ENST00000307305.12:ENST00000424760.5:ENST00000415251.6:ENST00000275575.11	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	2.31405	3.24293	4.17181	0.0517107	0.04531	0.176696	0.149888
chr9	6991024	6991123	4102507	0	+	0.343434	(0.32,0.35]	chr9	373744	1	INTRON	INTRON	KDM4C	ENSG00000107077.19	ENST00000536108.5:ENST00000438023.5:ENST00000381306.7:ENST00000381309.8:ENST00000543771.5:ENST00000428870.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	28	2	2.31405	3.24293	4.17181	0.0517107	0.04531	0.176696	0.149888
chr9	137410454	137410554	4377102	0	-	0.35	(0.32,0.35]	chr9	403549	147	INTRON	INTRON	EXD3	ENSG00000187609.16	ENST00000340951.9:ENST00000460390.6:ENST00000479452.5:ENST00000475006.1:ENST00000465160.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	28	2	2.31405	3.24293	4.17181	0.0517107	0.04531	0.176696	0.149888
chr1	28421045	28421145	56348	0	+	0.36	(0.35,0.378]	chr1	7273	132	INTRON	INTRON	PHACTR4	ENSG00000204138.13	ENST00000633371.1:ENST00000632202.1:ENST00000632421.1:ENST00000463428.5:ENST00000373839.8:ENST00000493669.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	27	2	2.39746	3.2428100000000004	4.08816	0.046021	0.041314	0.161534	0.149888
chr19	21042059	21042158	7039330	0	+	0.373737	(0.35,0.378]	chr19	701855	54	INTRON	INTRON	ZNF430	ENSG00000118620.13	ENST00000599548.5:ENST00000594110.5:ENST00000261560.10	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	2.39746	3.2428100000000004	4.08816	0.046021	0.041314	0.161534	0.149888
chr6	106312443	106312542	3178030	0	-	0.363636	(0.35,0.378]	chr6	296195	36	INTRON	INTRON	ATG5	ENSG00000057663.16	ENST00000636437.1:ENST00000636335.1:ENST00000369070.5:ENST00000369076.8:ENST00000635758.2:ENST00000360666.6:ENST00000343245.7:ENST00000646025.1:ENST00000613993.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	27	2	2.39746	3.2428100000000004	4.08816	0.046021	0.041314	0.161534	0.149888
chr22	21434395	21434494	7481343	0	+	0.434343	(0.408,0.44]	chr22	763209	133	INTRON	INTRON	HIC2	ENSG00000169635.10	ENST00000407464.7:ENST00000407598.2	protein_coding	protein_coding	protein_coding	protein_coding	3	78	2	2.45003	3.24268	4.03533	0.00990006	6.08082e-5	0.0838372	0.00644153
chr5	79624986	79625086	2398857	0	+	0.36	(0.35,0.378]	chr5	231707	11	INTRON	INTRON	TENT2	ENSG00000164329.14	ENST00000423041.6:ENST00000504233.5:ENST00000453514.6:ENST00000428308.6:ENST00000296783.7	protein_coding	protein_coding	protein_coding	protein_coding	6	63	2	1.49914	3.242375	4.98561	0.0306686	0.00474226	0.143385	0.0600445
chr16	58593375	58593475	6496015	0	-	0.47	(0.44,0.476]	chr16	628630	41	INTRON	INTRON	CNOT1	ENSG00000125107.19	ENST00000317147.10:ENST00000569240.5:ENST00000567188.5:ENST00000441024.6:ENST00000565605.5:ENST00000564557.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	35	2	2.14573	3.2423599999999997	4.33899	0.0238593	0.0206616	0.129075	0.110999
chr7	23386405	23386505	3502820	0	-	0.47	(0.44,0.476]	chr7	326877	234	INTRON	INTRON	IGF2BP3	ENSG00000136231.14	ENST00000258729.8:ENST00000421467.6:ENST00000468263.5:ENST00000492771.5:ENST00000479504.5:ENST00000466809.6:ENST00000491719.5:ENST00000465058.5:ENST00000469723.5:ENST00000474105.5:ENST00000476938.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	35	2	2.14573	3.2423599999999997	4.33899	0.0238593	0.0206616	0.129075	0.110999
chr6	31754129	31754227	2843636	0	+	0.418367	(0.408,0.44]	chr6	267818	1	INTRON	INTRON	MSH5:MSH5-SAPCD1	ENSG00000204410.16:ENSG00000255152.8	ENST00000375755.8:ENST00000375750.9:ENST00000650702.1:ENST00000493662.6:ENST00000375703.7:ENST00000375740.7:ENST00000423982.6:ENST00000463144.5:ENST00000450148.5:ENST00000468602.5:ENST00000468136.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	18	322	2	2.04741	3.242355	4.4373	7.10052e-4	8.7032e-9	0.0243894	3.23773e-5
chr20	38422714	38422808	7342177	0	-	0.382979	(0.378,0.408]	chr20	748300	6	EXON_LNCRNA	EXON_LNCRNA:SS3_PROX:INTRON	SNHG17	ENSG00000196756.14	ENST00000654008.2:ENST00000658076.1:ENST00000662982.2:ENST00000667188.1:ENST00000456953.7:ENST00000654183.2:ENST00000663540.2:ENST00000651115.2:ENST00000667835.1:ENST00000660885.2:ENST00000662213.1:ENST00000665233.2:ENST00000666268.2:ENST00000665735.1:ENST00000660558.2:ENST00000691280.1:ENST00000658488.2:ENST00000688336.1:ENST00000668054.2:ENST00000690441.1:ENST00000655520.2:ENST00000687490.1:ENST00000664626.1:ENST00000658051.1:ENST00000668042.1:ENST00000686971.1:ENST00000663187.1:ENST00000669114.1:ENST00000653343.1:ENST00000666225.1:ENST00000659186.1:ENST00000671309.1:ENST00000669405.1:ENST00000666806.1:ENST00000657665.1:ENST00000667282.1:ENST00000655311.1:ENST00000657868.1:ENST00000663534.1:ENST00000658141.1:ENST00000689917.1:ENST00000664073.2:ENST00000653697.1:ENST00000656320.1:ENST00000686814.1:ENST00000417578.7:ENST00000654853.1:ENST00000665440.1:ENST00000659102.1:ENST00000436764.7:ENST00000668482.2:ENST00000671249.1:ENST00000655692.1:ENST00000662568.1:ENST00000659255.1:ENST00000665693.1:ENST00000693250.1:ENST00000691368.1:ENST00000693227.1:ENST00000690361.1:ENST00000670051.1:ENST00000667912.1:ENST00000693665.1:ENST00000665181.1:ENST00000687532.1:ENST00000691386.1:ENST00000693684.1:ENST00000666331.1:ENST00000669480.1:ENST00000658905.1:ENST00000661252.1:ENST00000669137.1:ENST00000688133.1:ENST00000689414.1:ENST00000691314.1:ENST00000669033.1:ENST00000686145.1:ENST00000653938.1:ENST00000663784.1:ENST00000665003.1:ENST00000659400.1:ENST00000653753.1:ENST00000449469.5:ENST00000654389.1:ENST00000657429.1:ENST00000667412.1:ENST00000654092.1:ENST00000653277.1:ENST00000663955.1:ENST00000664964.1:ENST00000658324.1:ENST00000656023.1:ENST00000692262.1:ENST00000414142.5:ENST00000659753.1:ENST00000670958.1:ENST00000657216.2:ENST00000664636.1:ENST00000657843.1:ENST00000660189.1:ENST00000660064.1:ENST00000655198.1:ENST00000662572.1:ENST00000423536.6:ENST00000658455.1:ENST00000666419.1:ENST00000413755.5	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	4	96	2	2.48281	3.242255	4.0017	0.00340454	7.73853e-5	0.0517761	0.00735438
chr17	44147557	44147657	6615526	0	+	0.52	(0.515,0.57]	chr17	645080	3	SS3_PROX	SS3_PROX:INTRON	HROB	ENSG00000125319.15	ENST00000319977.8:ENST00000585683.6:ENST00000245382.6	protein_coding	protein_coding	protein_coding	protein_coding	2	34	2	2.08547	3.242235	4.399	0.0289426	0.00708863	0.1274	0.0754923
chr6	20423725	20423825	2827666	0	+	0.53	(0.515,0.57]	chr6	265575	195	INTRON	INTRON	E2F3	ENSG00000112242.16	ENST00000346618.8:ENST00000535432.2	protein_coding	protein_coding	protein_coding	protein_coding	2	34	2	2.08547	3.242235	4.399	0.0289426	0.00708863	0.1274	0.0754923
chr2	39328257	39328356	1103200	0	-	0.454545	(0.44,0.476]	chr2	118464	16	INTRON	INTRON	MAP4K3	ENSG00000011566.15	ENST00000263881.8:ENST00000437545.5:ENST00000341681.9:ENST00000429397.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	77	2	2.848	3.24219	3.63638	0.00215274	4.74104e-4	0.0417866	0.0196816
chr18	9577491	9577591	6945934	0	-	0.58	(0.57,1]	chr18	686990	3	SS3_PROX	SS3_PROX:INTRON	PPP4R1	ENSG00000154845.16	ENST00000400555.7:ENST00000400556.8:ENST00000285124.12:ENST00000580583.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	33	2	2.78409	3.241975	3.69986	0.0116033	1.9698e-4	0.0889104	0.0122531
chr1	21715211	21715299	396166	0	-	0.306818	(0.28,0.32]	chr1	47255	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	USP48	ENSG00000090686.16	ENST00000400301.5:ENST00000308271.14:ENST00000374732.7:ENST00000529637.5:ENST00000471752.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	42	2	2.24061	3.241905	4.2432	0.0479043	0.0194267	0.153019	0.119831
chr3	15827099	15827199	1624118	0	-	0.41	(0.408,0.44]	chr3	168034	124	INTRON	INTRON	ANKRD28	ENSG00000206560.12	ENST00000399451.6:ENST00000412318.5:ENST00000439830.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	53	2	1.40381	3.24182	5.07983	0.0521927	0.00247652	0.177259	0.0446195
chr4	897732	897832	2093937	0	-	0.53	(0.515,0.57]	chr4	206949	3	SS5_PROX	SS5_PROX:INTRON	GAK	ENSG00000178950.18	ENST00000314167.9:ENST00000511163.5:ENST00000505819.5:ENST00000507580.5:ENST00000502656.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	117	2	2.07243	3.2418050000000003	4.41118	0.00172897	7.5736e-6	0.0384338	0.00206677
chr6	30721488	30721573	2841349	0	+	0.694118	(0.57,1]	chr6	267064	6	INTRON	INTRON	TUBB	ENSG00000196230.14	ENST00000681435.1:ENST00000327892.13	protein_coding	protein_coding	protein_coding	protein_coding	5	60	2	2.85199	3.241615	3.63124	2.87208e-4	9.50812e-5	0.0150568	0.0086994
chr1	21861456	21861556	397349	0	-	0.37	(0.35,0.378]	chr1	47595	3	SS5_PROX	SS5_PROX:INTRON	HSPG2	ENSG00000142798.20	ENST00000374695.8	protein_coding	protein_coding	protein_coding	protein_coding	2	62	2	2.94111	3.241485	3.54186	0.0104563	8.14353e-4	0.0855102	0.02604
chr9	128500820	128500914	4205378	0	+	0.351064	(0.35,0.378]	chr9	384550	7	UTR3	UTR3:EXON_MRNA	ODF2	ENSG00000136811.17	ENST00000351030.8:ENST00000444119.7:ENST00000393527.8:ENST00000686232.1:ENST00000434106.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	62	2	2.94111	3.241485	3.54186	0.0104563	8.14353e-4	0.0855102	0.02604
chr2	197489938	197490024	1307065	0	-	0.325581	(0.32,0.35]	chr2	136773	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HSPD1	ENSG00000144381.18	ENST00000388968.8:ENST00000426480.2:ENST00000345042.6:ENST00000452200.6:ENST00000679291.1:ENST00000677403.1:ENST00000678621.1:ENST00000678545.1:ENST00000676933.1:ENST00000678170.1:ENST00000476746.6:ENST00000678969.1:ENST00000428204.6:ENST00000418022.2:ENST00000439605.2:ENST00000440114.2:ENST00000461097.2:ENST00000677792.1:ENST00000678761.1:ENST00000677913.1:ENST00000677454.1:ENST00000491249.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	106	2	2.8152	3.241435	3.66767	8.30614e-4	6.37027e-4	0.0266389	0.0228285
chr2	17783221	17783320	706854	0	+	0.454545	(0.44,0.476]	chr2	81910	14	UTR3	UTR3:EXON_MRNA	GEN1	ENSG00000178295.15	ENST00000317402.11:ENST00000381254.7	protein_coding	protein_coding	protein_coding	protein_coding	3	89	2	2.14573	3.2413999999999996	4.33707	0.0238593	2.07695e-5	0.129075	0.00371583
chr4	128819258	128819357	2044361	0	+	0.565657	(0.515,0.57]	chr4	202994	24	INTRON	INTRON	JADE1	ENSG00000077684.16	ENST00000226319.11:ENST00000511647.5:ENST00000452328.6:ENST00000504089.5:ENST00000512960.5:ENST00000503785.5:ENST00000514740.1:ENST00000610919.4:ENST00000510308.5:ENST00000511925.5:ENST00000413543.6:ENST00000611140.4:ENST00000507833.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	50	2	3.12663	3.2413600000000002	3.35609	0.00374498	0.00174131	0.0562234	0.0375363
chr6	104793031	104793128	3171814	0	-	0.525773	(0.515,0.57]	chr6	295872	10	INTRON	INTRON	HACE1	ENSG00000085382.12	ENST00000262903.9:ENST00000416605.6:ENST00000369125.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	50	2	3.12663	3.2413600000000002	3.35609	0.00374498	0.00174131	0.0562234	0.0375363
chr15	27200863	27200963	5984452	0	+	0.43	(0.408,0.44]	chr15	569164	1737	INTRON	INTRON	GABRG3	ENSG00000182256.13	ENST00000615808.5:ENST00000555083.5	protein_coding	protein_coding	protein_coding	protein_coding	6	117	2	2.23161	3.24131	4.25101	0.00206564	3.50592e-5	0.04217	0.00499276
chr19	1637586	1637686	7112964	0	-	0.65	(0.57,1]	chr19	714651	48	INTRON	INTRON	TCF3	ENSG00000071564.17	ENST00000344749.9:ENST00000611869.5:ENST00000262965.12:ENST00000588136.7:ENST00000453954.6:ENST00000395423.7:ENST00000587235.6:ENST00000586318.1	protein_coding	protein_coding	protein_coding	protein_coding	2	33	2	2.91889	3.2412900000000002	3.56369	0.00719009	4.26536e-4	0.0756118	0.0189958
chr13	41856761	41856860	5581491	0	-	0.383838	(0.378,0.408]	chr13	533505	229	INTRON	INTRON	VWA8	ENSG00000102763.18	ENST00000379310.8:ENST00000281496.6	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	2.38873	3.24126	4.09379	0.0458857	0.023912	0.149888	0.129075
chr16	20771351	20771450	6317656	0	+	0.393939	(0.378,0.408]	chr16	604596	7	INTRON	INTRON	ACSM3	ENSG00000005187.12	ENST00000568235.5:ENST00000289416.10:ENST00000440284.6:ENST00000561795.5:ENST00000562251.5	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	2.38873	3.24126	4.09379	0.0458857	0.023912	0.149888	0.129075
chr2	74209202	74209294	813342	0	+	0.380435	(0.378,0.408]	chr2	90950	3	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	MTHFD2	ENSG00000065911.13	ENST00000677997.1:ENST00000677170.1:ENST00000678684.1:ENST00000409804.5:ENST00000489041.2:ENST00000470592.5:ENST00000678955.1:ENST00000394053.7:ENST00000677377.1:ENST00000679055.1:ENST00000678340.1:ENST00000409601.1:ENST00000678228.1:ENST00000462026.2:ENST00000678623.1:ENST00000678731.1:ENST00000677299.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	59	2	3.05502	3.24126	3.4275	0.00689519	0.00126053	0.0717484	0.03295
chr22	28736280	28736376	7573459	0	-	0.40625	(0.378,0.408]	chr22	774425	12	INTRON	INTRON	CHEK2	ENSG00000183765.23	ENST00000416671.5:ENST00000348295.7:ENST00000404276.6:ENST00000425190.7:ENST00000649563.1:ENST00000405598.5:ENST00000382580.6:ENST00000650281.1:ENST00000433028.6:ENST00000439200.5:ENST00000650233.1:ENST00000398017.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	29	2	2.38873	3.24126	4.09379	0.0458857	0.023912	0.149888	0.129075
chr4	749785	749884	1908239	0	+	0.393939	(0.378,0.408]	chr4	191255	47	INTRON	INTRON	PCGF3	ENSG00000185619.18	ENST00000362003.9:ENST00000470161.6:ENST00000430644.5:ENST00000440452.5:ENST00000488032.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	29	2	2.38873	3.24126	4.09379	0.0458857	0.023912	0.149888	0.129075
chr19	11118195	11118295	7017122	0	+	0.53	(0.515,0.57]	chr19	697485	8	INTRON	INTRON	LDLR	ENSG00000130164.14	ENST00000557933.5:ENST00000558518.6:ENST00000545707.5:ENST00000535915.5:ENST00000455727.6:ENST00000558013.5:ENST00000252444.9:ENST00000559340.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	100	2	2.21892	3.24124	4.26356	0.00198472	1.84244e-5	0.0411469	0.00349761
chr8	48017369	48017469	3752326	0	+	0.51	(0.476,0.515]	chr8	349044	84	INTRON	INTRON	UBE2V2	ENSG00000169139.12	ENST00000523432.5:ENST00000521346.5:ENST00000523111.7:ENST00000518360.5:ENST00000517630.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	38	2	2.05154	3.241235	4.43093	0.0336015	0.00931369	0.134145	0.0855292
chr12	112036998	112037098	5414677	0	-	0.38	(0.378,0.408]	chr12	517121	17	INTRON	INTRON	NAA25	ENSG00000111300.10	ENST00000261745.9:ENST00000552527.5:ENST00000549711.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	59	2	3.10274	3.24122	3.3797	0.00586642	0.00154501	0.0668095	0.0362716
chr6	160028194	160028289	3023563	0	+	0.536842	(0.515,0.57]	chr6	282043	5	INTRON	INTRON	IGF2R	ENSG00000197081.16	ENST00000676781.1:ENST00000677704.1:ENST00000356956.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	66	2	2.78208	3.24119	3.7003	0.00209264	3.73715e-4	0.0424943	0.0179087
chr7	121029820	121029919	3394049	0	+	0.232323	[0,0.28]	chr7	317682	136	INTRON	INTRON	CPED1	ENSG00000106034.18	ENST00000340646.9:ENST00000310396.10:ENST00000428526.5:ENST00000495036.5:ENST00000450913.6:ENST00000520801.5:ENST00000521774.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	110	2	2.54342	3.24115	3.93888	0.0105954	2.29361e-4	0.0861859	0.013345
chr17	82264294	82264393	6852736	0	-	0.535354	(0.515,0.57]	chr17	679151	84	INTRON	INTRON	CSNK1D	ENSG00000141551.15	ENST00000398519.9:ENST00000314028.11:ENST00000581241.5:ENST00000392334.6:ENST00000403276.7:ENST00000582844.5:ENST00000580446.1:ENST00000581660.5:ENST00000578194.5:ENST00000579316.5:ENST00000584472.5:ENST00000580061.5:ENST00000585026.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	38	2	1.88259	3.2408650000000003	4.59914	0.0251849	0.00616166	0.133519	0.0676501
chr18	687572	687672	6939515	0	-	0.54	(0.515,0.57]	chr18	686403	9	EXON_LNCRNA	EXON_LNCRNA:INTRON	ENOSF1	ENSG00000132199.20	ENST00000647584.2:ENST00000383578.7:ENST00000584259.6:ENST00000340116.12:ENST00000581475.5:ENST00000580982.5:ENST00000585128.6:ENST00000583973.5:ENST00000584453.5:ENST00000578651.5:ENST00000577334.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	51	2	2.98677	3.240865	3.49496	0.00632549	9.61701e-4	0.0722266	0.0282401
chr11	46073234	46073334	4944761	0	-	0.59	(0.57,1]	chr11	463349	224	INTRON	INTRON	PHF21A	ENSG00000135365.17	ENST00000676320.1:ENST00000323180.10:ENST00000530587.6:ENST00000693049.1:ENST00000690620.1:ENST00000418153.6:ENST00000525676.6:ENST00000689695.1:ENST00000685188.1:ENST00000532883.5:ENST00000524497.5:ENST00000531959.5:ENST00000687985.1:ENST00000693122.1:ENST00000529734.5:ENST00000529782.5:ENST00000688222.1:ENST00000691784.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	97	2	2.81876	3.240775	3.66279	4.48418e-5	9.74618e-7	0.0057779	5.60418e-4
chr11	47369235	47369335	4949307	0	-	0.37	(0.35,0.378]	chr11	464068	88	INTRON	INTRON	SPI1	ENSG00000066336.12	ENST00000378538.8:ENST00000227163.8:ENST00000533030.1:ENST00000533968.1	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	2.53856	3.240735	3.94291	0.0374229	0.0326077	0.155878	0.133687
chr5	43474318	43474418	2614742	0	-	0.37	(0.35,0.378]	chr5	248552	194	INTRON	INTRON	TMEM267	ENSG00000151881.15	ENST00000397080.8:ENST00000500337.6:ENST00000512085.5:ENST00000511525.1:ENST00000510130.1:ENST00000506860.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	31	2	2.53856	3.240735	3.94291	0.0374229	0.0326077	0.155878	0.133687
chr10	35336064	35336119	4601757	0	-	0.236364	[0,0.28]	chr10	423939	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CCNY-AS1	ENSG00000271335.6	ENST00000605499.1	lncRNA	lncRNA	lncRNA	lncRNA	7	227	2	2.83013	3.240685	3.65124	1.85464e-4	1.55343e-4	0.0118849	0.0113474
chrX	48464932	48465029	7815407	0	-	0.443299	(0.44,0.476]	chrX	796682	16	INTRON	INTRON	SLC38A5	ENSG00000017483.16	ENST00000595796.5:ENST00000619100.4:ENST00000620913.5:ENST00000497336.1:ENST00000494034.5:ENST00000440085.5:ENST00000441948.5:ENST00000413668.5:ENST00000416711.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	188	2	2.92102	3.240615	3.56021	7.71465e-5	6.29038e-6	0.00784644	0.00176109
chr11	57738837	57738905	4792885	0	+	0.397059	(0.378,0.408]	chr11	443674	2	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ENSG00000288534:TMX2	ENSG00000288534.1:ENSG00000213593.10	ENST00000673781.1:ENST00000673810.1:ENST00000278422.9:ENST00000674116.1:ENST00000524972.5:ENST00000378312.8:ENST00000530114.5:ENST00000525035.5:ENST00000529403.1:ENST00000528110.5:ENST00000674060.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	47	2	1.63458	3.2404249999999997	4.84627	0.0573057	0.00254319	0.167723	0.0465056
chr4	77863413	77863513	1979872	0	+	0.38	(0.378,0.408]	chr4	198316	4	SS5_PROX	SS5_PROX:INTRON	MRPL1	ENSG00000169288.18	ENST00000315567.13:ENST00000515625.1:ENST00000511521.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	47	2	1.63458	3.2404249999999997	4.84627	0.0573057	0.00254319	0.167723	0.0465056
chr12	119680924	119681024	5234970	0	+	0.45	(0.44,0.476]	chr12	496719	7	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	PRKAB1	ENSG00000111725.11	ENST00000541640.5:ENST00000229328.10:ENST00000542698.1:ENST00000537057.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	188	2	2.84488	3.24041	3.63594	7.01337e-5	8.03141e-6	0.00693374	0.00214254
chr15	27111393	27111493	5983557	0	+	0.38	(0.378,0.408]	chr15	569164	842	INTRON	INTRON	GABRG3	ENSG00000182256.13	ENST00000615808.5:ENST00000555083.5	protein_coding	protein_coding	protein_coding	protein_coding	2	35	2	1.89621	3.24024	4.58427	0.0488044	0.0128325	0.173377	0.0926667
chr20	10579397	10579497	7241321	0	+	0.39	(0.378,0.408]	chr20	735181	182	INTRON	INTRON	SLX4IP	ENSG00000149346.15	ENST00000334534.10	protein_coding	protein_coding	protein_coding	protein_coding	2	35	2	1.89621	3.24024	4.58427	0.0488044	0.0128325	0.173377	0.0926667
chr22	41096483	41096582	7521532	0	+	0.383838	(0.378,0.408]	chr22	768515	30	INTRON	INTRON	EP300	ENSG00000100393.14	ENST00000263253.9:ENST00000674155.1	protein_coding	protein_coding	protein_coding	protein_coding	2	35	2	1.89621	3.24024	4.58427	0.0488044	0.0128325	0.173377	0.0926667
chr7	139776704	139776804	3658823	0	-	0.39	(0.378,0.408]	chr7	339545	593	INTRON	INTRON	HIPK2	ENSG00000064393.16	ENST00000406875.8:ENST00000428878.6	protein_coding	protein_coding	protein_coding	protein_coding	2	35	2	1.89621	3.24024	4.58427	0.0488044	0.0128325	0.173377	0.0926667
chr13	46036088	46036187	5586038	0	-	0.40404	(0.378,0.408]	chr13	533848	152	INTRON	INTRON	ZC3H13	ENSG00000123200.17	ENST00000242848.8:ENST00000679008.1:ENST00000282007.7	protein_coding	protein_coding	protein_coding	protein_coding	2	35	2	1.81685	3.2401150000000003	4.66338	0.0597868	0.0103469	0.189982	0.0850389
chr6	37285927	37286024	2855597	0	+	0.391753	(0.378,0.408]	chr6	269973	11	INTRON	INTRON	TBC1D22B	ENSG00000065491.8	ENST00000373491.3	protein_coding	protein_coding	protein_coding	protein_coding	2	35	2	1.81685	3.2401150000000003	4.66338	0.0597868	0.0103469	0.189982	0.0850389
chr6	45328259	45328359	3103492	0	-	0.38	(0.378,0.408]	chr6	290493	49	INTRON	INTRON	SUPT3H	ENSG00000196284.17	ENST00000475057.5:ENST00000371459.6:ENST00000371460.5:ENST00000459689.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	35	2	1.81685	3.2401150000000003	4.66338	0.0597868	0.0103469	0.189982	0.0850389
chr16	58594169	58594268	6496023	0	-	0.464646	(0.44,0.476]	chr16	628630	49	INTRON	INTRON	CNOT1	ENSG00000125107.19	ENST00000317147.10:ENST00000569240.5:ENST00000567188.5:ENST00000441024.6:ENST00000565605.5:ENST00000564557.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	58	2	2.80275	3.2400700000000002	3.67739	0.0146513	3.8961e-4	0.0982604	0.0177751
chr9	130757454	130757554	4214299	0	+	0.5	(0.476,0.515]	chr9	386427	426	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000393293.4	protein_coding	protein_coding	protein_coding	protein_coding	2	37	2	1.86492	3.240055	4.61519	0.0550347	0.00528365	0.165463	0.0656295
chr11	62583586	62583685	4959705	0	-	0.353535	(0.35,0.378]	chr11	466308	6	INTRON	INTRON	TUT1	ENSG00000149016.16	ENST00000308436.11:ENST00000476907.6:ENST00000278279.7:ENST00000494385.1:ENST00000478537.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	50	2	1.49446	3.240035	4.98561	0.054297	0.00474226	0.182243	0.0600445
chr8	58605826	58605926	3955374	0	-	0.49	(0.476,0.515]	chr8	362868	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	NSMAF	ENSG00000035681.9	ENST00000038176.8:ENST00000649465.1:ENST00000427130.6:ENST00000519858.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	76	2	2.66112	3.24003	3.81894	0.0044598	1.96038e-4	0.0592169	0.0122528
chr13	99085322	99085422	5646810	0	-	0.61	(0.57,1]	chr13	537857	694	INTRON	INTRON	DOCK9	ENSG00000088387.21	ENST00000652315.1:ENST00000427887.2:ENST00000479769.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	32	2	3.13254	3.240025	3.34751	0.00310655	0.00122677	0.0512344	0.0320791
chr17	82448118	82448213	6853254	0	-	0.621053	(0.57,1]	chr17	679293	3	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	CYBC1	ENSG00000178927.18	ENST00000306645.10:ENST00000342572.12:ENST00000434650.6:ENST00000584024.5:ENST00000437807.6:ENST00000585044.5:ENST00000583617.5:ENST00000582725.5:ENST00000577436.5:ENST00000585064.5:ENST00000577732.5:ENST00000578919.5:ENST00000580560.5:ENST00000581196.5:ENST00000584503.5:ENST00000585080.5:ENST00000577888.5:ENST00000577707.5:ENST00000578913.5:ENST00000584891.5:ENST00000584408.5:ENST00000577696.5:ENST00000577471.5:ENST00000577834.5:ENST00000578941.5:ENST00000578064.1:ENST00000582395.5:ENST00000582608.5:ENST00000583359.1:ENST00000582545.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	32	2	3.13254	3.240025	3.34751	0.00310655	0.00122677	0.0512344	0.0320791
chr1	53825866	53825936	460485	0	-	0.414286	(0.408,0.44]	chr1	55430	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	NDC1	ENSG00000058804.12	ENST00000371429.4:ENST00000480952.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	48	2	1.6546400000000001	3.2399700000000005	4.8253	0.0329965	0.0056738	0.145298	0.0653997
chr1	50650241	50650341	449147	0	-	0.41	(0.408,0.44]	chr1	54223	434	INTRON	INTRON	FAF1	ENSG00000185104.21	ENST00000396153.7:ENST00000494400.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	54	2	1.62122	3.23997	4.85872	0.0394247	0.00221911	0.143072	0.0435144
chr12	62577944	62578044	5152310	0	+	0.29	(0.28,0.32]	chr12	487624	1	SS3_PROX	SS3_PROX:INTRON	MON2	ENSG00000061987.16	ENST00000641654.1:ENST00000546600.5:ENST00000393630.8:ENST00000547095.5:ENST00000552738.5:ENST00000393629.6:ENST00000551307.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	43	2	2.33771	3.2399250000000004	4.14214	0.0579756	0.0142701	0.167723	0.103838
chr12	69260697	69260794	5163726	0	+	0.309278	(0.28,0.32]	chr12	489042	1	INTRON	INTRON	CPSF6	ENSG00000111605.18	ENST00000435070.7:ENST00000650046.1:ENST00000456847.7:ENST00000266679.8:ENST00000551516.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	43	2	2.33771	3.2399250000000004	4.14214	0.0579756	0.0142701	0.167723	0.103838
chr6	4887091	4887191	2791970	0	+	0.31	(0.28,0.32]	chr6	263602	504	INTRON	INTRON	CDYL	ENSG00000153046.18	ENST00000328908.9:ENST00000491864.1:ENST00000440139.5:ENST00000483019.1:ENST00000397588.8:ENST00000472453.5:ENST00000449732.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	43	2	2.33771	3.2399250000000004	4.14214	0.0579756	0.0142701	0.167723	0.103838
chr6	57141947	57142004	2878588	0	+	0.315789	(0.28,0.32]	chr6	273290	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	ZNF451	ENSG00000112200.17	ENST00000357489.7:ENST00000444273.6:ENST00000370706.9:ENST00000491832.6:ENST00000504603.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	43	2	2.33771	3.2399250000000004	4.14214	0.0579756	0.0142701	0.167723	0.103838
chr1	50554998	50555098	448188	0	-	0.47	(0.44,0.476]	chr1	54189	149	INTRON	INTRON	FAF1	ENSG00000185104.21	ENST00000396153.7:ENST00000494400.5:ENST00000472808.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	42	2	1.87325	3.23986	4.60647	0.0265709	0.0102339	0.134088	0.0850389
chr1	35955558	35955658	71389	0	+	0.41	(0.408,0.44]	chr1	9138	93	INTRON	INTRON	AGO3	ENSG00000126070.20	ENST00000324350.9:ENST00000397828.3:ENST00000634486.1:ENST00000373191.9:ENST00000246314.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	35	2	2.14732	3.2398499999999997	4.33238	0.0237354	0.0218901	0.129075	0.11491
chr5	72880902	72880999	2387783	0	+	0.412371	(0.408,0.44]	chr5	230422	19	INTRON	INTRON	TNPO1	ENSG00000083312.19	ENST00000680533.1:ENST00000520850.5:ENST00000337273.10:ENST00000680025.1:ENST00000523768.5:ENST00000681711.1:ENST00000679378.1:ENST00000506351.6:ENST00000508762.5:ENST00000505082.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	35	2	2.14732	3.2398499999999997	4.33238	0.0237354	0.0218901	0.129075	0.11491
chr1	246886268	246886356	681483	0	-	0.409091	(0.408,0.44]	chr1	79935	2	INTRON	INTRON	AHCTF1	ENSG00000153207.16	ENST00000648844.2:ENST00000326225.3:ENST00000366508.5:ENST00000470300.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	77	2	2.72208	3.239815	3.75755	0.00364449	2.62433e-4	0.0535094	0.0143317
chr13	25317972	25318069	5457343	0	+	0.494845	(0.476,0.515]	chr13	522917	2	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	NUP58	ENSG00000139496.17	ENST00000481980.2:ENST00000490231.6:ENST00000695571.1:ENST00000477876.2:ENST00000695572.1:ENST00000463407.6:ENST00000695573.1:ENST00000381736.8:ENST00000695583.1:ENST00000466694.6:ENST00000381718.8:ENST00000695575.1:ENST00000695574.1:ENST00000495460.2:ENST00000381747.7:ENST00000695576.1:ENST00000394327.2:ENST00000695577.1:ENST00000695584.1:ENST00000476553.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	35	2	2.13304	3.2397599999999995	4.34648	0.024866	0.0193566	0.132101	0.108861
chr8	89756610	89756666	3985272	0	-	0.321429	(0.32,0.35]	chr8	365002	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RIPK2-DT	ENSG00000251136.10	ENST00000688654.1:ENST00000690564.1:ENST00000661105.1:ENST00000685145.1:ENST00000519655.6:ENST00000656898.2:ENST00000685787.1:ENST00000693018.1:ENST00000691313.1:ENST00000691446.1:ENST00000524190.2:ENST00000691897.1:ENST00000685988.1:ENST00000691595.1:ENST00000688855.1:ENST00000504145.6:ENST00000685619.1:ENST00000653574.1:ENST00000687824.1:ENST00000521996.2:ENST00000692782.1:ENST00000655144.2:ENST00000687204.1:ENST00000689241.1:ENST00000686009.1:ENST00000685448.1:ENST00000688669.1:ENST00000686147.1:ENST00000523859.2	lncRNA	lncRNA	lncRNA	lncRNA	4	119	2	3.14155	3.23975	3.33795	8.11889e-4	1.93e-4	0.0263656	0.012131
chr11	118999450	118999529	4873986	0	+	0.392405	(0.378,0.408]	chr11	455377	3	SS5_PROX	SS5_PROX:INTRON	CENATAC	ENSG00000186166.9	ENST00000334418.6:ENST00000524670.5:ENST00000526463.5:ENST00000532132.5:ENST00000580556.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	59	2	3.00568	3.239725	3.47377	0.00811866	0.00103087	0.0766625	0.0294094
chr5	134175204	134175296	2726344	0	-	0.402174	(0.378,0.408]	chr5	256514	4	UTR5	UTR5:EXON_MRNA:INTRON	SKP1	ENSG00000113558.19	ENST00000353411.11:ENST00000522552.5:ENST00000521216.5:ENST00000517625.5:ENST00000523966.5:ENST00000522855.5:ENST00000328392.10:ENST00000519054.5:ENST00000519321.5:ENST00000524288.1:ENST00000523359.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	59	2	3.14892	3.2395899999999997	3.33026	0.00499984	0.00189824	0.0617433	0.0402736
chr11	64215794	64215892	4802341	0	+	0.459184	(0.44,0.476]	chr11	445346	37	INTRON	INTRON	FERMT3	ENSG00000149781.13	ENST00000544997.5:ENST00000345728.10:ENST00000279227.9:ENST00000541326.5:ENST00000546255.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	58	2	3.08591	3.239565	3.39322	0.00481262	0.00187283	0.0638089	0.0390476
chr10	28566622	28566722	4414140	0	+	0.36	(0.35,0.378]	chr10	407148	282	INTRON	INTRON	WAC	ENSG00000095787.24	ENST00000680735.1:ENST00000375664.8:ENST00000428935.6:ENST00000651598.1:ENST00000628285.3:ENST00000681112.1:ENST00000679570.1:ENST00000375646.5:ENST00000354911.9:ENST00000347934.8:ENST00000420266.6:ENST00000651885.1:ENST00000651441.1:ENST00000679398.1:ENST00000424454.5:ENST00000442148.6:ENST00000448193.5:ENST00000414108.6:ENST00000679428.1:ENST00000439676.5:ENST00000345541.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	67	2	1.32176	3.2394950000000002	5.15723	0.0452456	0.00272706	0.163924	0.0467523
chr1	21754007	21754104	396573	0	-	0.536082	(0.515,0.57]	chr1	47332	5	INTRON	INTRON	USP48	ENSG00000090686.16	ENST00000400301.5:ENST00000308271.14:ENST00000529637.5:ENST00000421625.6:ENST00000527823.5:ENST00000532737.1	protein_coding	protein_coding	protein_coding	protein_coding	2	33	2	2.39351	3.239445	4.08538	0.0253843	0.0100431	0.12011	0.0881096
chr2	168871430	168871530	1259592	0	-	0.38	(0.378,0.408]	chr2	133365	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:INTRON	SPC25	ENSG00000152253.9	ENST00000479309.6:ENST00000282074.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	80	2	2.83344	3.2393650000000003	3.64529	0.00244811	4.71767e-4	0.0445777	0.0196294
chr21	44060560	44060660	7415521	0	+	0.46	(0.44,0.476]	chr21	755816	4	INTRON	INTRON	TRAPPC10	ENSG00000160218.13	ENST00000291574.9:ENST00000422875.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	103	2	2.848	3.239325	3.63065	0.00215274	2.7933e-5	0.0417866	0.00417558
chr19	537347	537447	6991775	0	+	0.56	(0.515,0.57]	chr19	692122	2	SS5_PROX	SS5_PROX:INTRON	CDC34	ENSG00000099804.9	ENST00000215574.9:ENST00000586283.6:ENST00000607527.5:ENST00000606065.3:ENST00000606400.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	80	2	2.24433	3.2392900000000004	4.23425	0.00725078	1.40595e-5	0.072984	0.00279379
chr1	108301007	108301107	176645	0	+	0.4	(0.378,0.408]	chr1	19153	163	INTRON	INTRON	SLC25A24P1	ENSG00000241361.8	ENST00000411846.6:ENST00000434803.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	6	146	2	2.78965	3.23911	3.68857	2.29046e-4	4.15084e-5	0.0133403	0.00546267
chr1	1745323	1745423	361435	0	-	0.39	(0.378,0.408]	chr1	42145	2	SS5_PROX	SS5_PROX:INTRON	SLC35E2A	ENSG00000215790.8	ENST00000647043.1:ENST00000246421.4	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	1	26	2	2.26252	3.2390749999999997	4.21563	0.056222	0.0315429	0.18407	0.13151
chr1	17436043	17436142	384950	0	-	0.383838	(0.378,0.408]	chr1	45493	65	INTRON	INTRON	RCC2	ENSG00000179051.14	ENST00000375436.9:ENST00000375433.3	protein_coding	protein_coding	protein_coding	protein_coding	1	26	2	2.26252	3.2390749999999997	4.21563	0.056222	0.0315429	0.18407	0.13151
chr1	150488343	150488439	222843	0	+	0.385417	(0.378,0.408]	chr1	25122	4	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	TARS2	ENSG00000143374.18	ENST00000369054.6:ENST00000369064.8:ENST00000606933.5:ENST00000369053.3:ENST00000369051.7:ENST00000479372.1:ENST00000467982.6:ENST00000466989.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	26	2	2.26252	3.2390749999999997	4.21563	0.056222	0.0315429	0.18407	0.13151
chr10	125121458	125121558	4713947	0	-	0.39	(0.378,0.408]	chr10	434913	100	INTRON	INTRON	CTBP2	ENSG00000175029.17	ENST00000337195.9:ENST00000411419.6:ENST00000494626.6:ENST00000531469.5:ENST00000460976.5:ENST00000476817.1:ENST00000530884.1:ENST00000530930.1:ENST00000467395.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	26	2	2.26252	3.2390749999999997	4.21563	0.056222	0.0315429	0.18407	0.13151
chr12	2831185	2831285	5065557	0	+	0.39	(0.378,0.408]	chr12	478048	3	SS5_PROX	SS5_PROX:INTRON	ITFG2	ENSG00000111203.13	ENST00000644123.1:ENST00000644517.1:ENST00000645513.1:ENST00000643039.1:ENST00000552005.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	1	26	2	2.26252	3.2390749999999997	4.21563	0.056222	0.0315429	0.18407	0.13151
chr19	4414933	4415032	7001886	0	+	0.40404	(0.378,0.408]	chr19	694523	48	INTRON	INTRON	CHAF1A	ENSG00000167670.16	ENST00000301280.10:ENST00000587739.1	protein_coding	protein_coding	protein_coding	protein_coding	1	26	2	2.26252	3.2390749999999997	4.21563	0.056222	0.0315429	0.18407	0.13151
chr20	35084248	35084348	7332821	0	-	0.4	(0.378,0.408]	chr20	746973	57	INTRON	INTRON	TRPC4AP	ENSG00000100991.12	ENST00000252015.3:ENST00000451813.6	protein_coding	protein_coding	protein_coding	protein_coding	1	26	2	2.26252	3.2390749999999997	4.21563	0.056222	0.0315429	0.18407	0.13151
chr21	9336058	9336157	7367492	0	+	0.383838	(0.378,0.408]	chr21	751926	44	INTRON	INTRON	ENSG00000278932	ENSG00000278932.5	ENST00000622961.3:ENST00000686553.1:ENST00000691955.1:ENST00000625153.3:ENST00000692626.1:ENST00000685951.1:ENST00000686510.1:ENST00000692884.1	lncRNA	lncRNA	lncRNA	lncRNA	1	26	2	2.26252	3.2390749999999997	4.21563	0.056222	0.0315429	0.18407	0.13151
chr22	50509741	50509841	7545253	0	+	0.4	(0.378,0.408]	chr22	771151	9	INTRON	INTRON	NCAPH2	ENSG00000025770.19	ENST00000420993.7:ENST00000395698.7:ENST00000395701.7:ENST00000518394.5:ENST00000523045.5:ENST00000418794.1:ENST00000299821.15	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	26	2	2.26252	3.2390749999999997	4.21563	0.056222	0.0315429	0.18407	0.13151
chr4	10455488	10455583	2107593	0	-	0.378947	(0.378,0.408]	chr4	208519	1	INTRON	INTRON	ZNF518B	ENSG00000178163.8	ENST00000326756.4:ENST00000507515.1:ENST00000503068.1:ENST00000515072.1:ENST00000500268.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	26	2	2.26252	3.2390749999999997	4.21563	0.056222	0.0315429	0.18407	0.13151
chr7	2548076	2548175	3468203	0	-	0.383838	(0.378,0.408]	chr7	324301	2	INTRON	INTRON	BRAT1	ENSG00000106009.16	ENST00000340611.9:ENST00000469750.5:ENST00000467558.5:ENST00000421712.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	26	2	2.26252	3.2390749999999997	4.21563	0.056222	0.0315429	0.18407	0.13151
chr7	91972444	91972539	3351331	0	+	0.378947	(0.378,0.408]	chr7	312186	16	INTRON	INTRON	AKAP9	ENSG00000127914.19	ENST00000680534.1:ENST00000680513.1:ENST00000680072.1:ENST00000679821.1:ENST00000679554.1:ENST00000356239.8:ENST00000679521.1:ENST00000680181.1:ENST00000681722.1:ENST00000680766.1:ENST00000679448.1:ENST00000681412.1:ENST00000680047.1:ENST00000679474.1:ENST00000680952.1:ENST00000679457.1:ENST00000679722.1:ENST00000680074.1:ENST00000493453.1:ENST00000394564.5:ENST00000674381.2:ENST00000359028.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	26	2	2.26252	3.2390749999999997	4.21563	0.056222	0.0315429	0.18407	0.13151
chr7	127719158	127719258	3403080	0	+	0.4	(0.378,0.408]	chr7	318127	4	SS5_PROX	SS5_PROX:INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000468166.5:ENST00000465900.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	26	2	2.26252	3.2390749999999997	4.21563	0.056222	0.0315429	0.18407	0.13151
chr12	110400038	110400138	5409162	0	-	0.47	(0.44,0.476]	chr12	516463	32	INTRON	INTRON	ANAPC7:ENSG00000258210	ENSG00000196510.14:ENSG00000258210.1	ENST00000455511.9:ENST00000450008.3:ENST00000552170.2:ENST00000550231.1:ENST00000464697.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay	14	298	2	2.54045	3.2387449999999998	3.93704	9.30838e-5	8.78961e-8	0.00857086	1.27261e-4
chr3	122573919	122574018	1488167	0	+	0.525253	(0.515,0.57]	chr3	155460	23	UTR3	UTR3:EXON_MRNA	DTX3L	ENSG00000163840.10	ENST00000296161.9	protein_coding	protein_coding	protein_coding	protein_coding	7	152	2	2.66721	3.238645	3.81008	3.70168e-4	1.30471e-6	0.0173218	7.42638e-4
chr12	74238148	74238248	5367828	0	-	0.36	(0.35,0.378]	chr12	512116	339	INTRON	INTRON	LINC02882	ENSG00000251138.7	ENST00000663261.1:ENST00000665907.1:ENST00000669556.1:ENST00000653134.1:ENST00000549905.5:ENST00000662107.1:ENST00000658833.1:ENST00000515416.7:ENST00000551726.2:ENST00000670573.1:ENST00000656876.1:ENST00000668228.1:ENST00000668997.1:ENST00000665895.1:ENST00000670471.1:ENST00000658677.1:ENST00000668665.1	lncRNA	lncRNA	lncRNA	lncRNA	4	111	2	3.02262	3.2386299999999997	3.45464	0.00119456	9.07166e-5	0.0315806	0.00796627
chr16	85507986	85508086	6414910	0	+	0.56	(0.515,0.57]	chr16	615465	1487	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	7	140	2	2.98062	3.238585	3.49655	4.90491e-5	3.31222e-5	0.00572797	0.00486169
chr7	72920648	72920746	3330206	0	+	0.306122	(0.28,0.32]	chr7	309573	5	INTRON	INTRON	POM121	ENSG00000196313.13	ENST00000627934.3:ENST00000395270.5	protein_coding	protein_coding	protein_coding	protein_coding	2	72	2	3.17453	3.23858	3.30263	0.00429297	0.0038504	0.0599065	0.0542786
chr15	88912701	88912793	6256839	0	-	0.630435	(0.57,1]	chr15	596908	4	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	MFGE8	ENSG00000140545.16	ENST00000268150.13:ENST00000558018.5:ENST00000558029.6:ENST00000268151.11:ENST00000566497.5:ENST00000695774.1:ENST00000542878.5:ENST00000695567.1:ENST00000695568.1:ENST00000695569.1:ENST00000695570.1:ENST00000559997.5:ENST00000558352.5:ENST00000558773.1:ENST00000557944.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	30	2	2.30825	3.23853	4.16881	0.00574776	0.00499769	0.0681402	0.0617433
chr16	75648782	75648882	6391157	0	+	0.49	(0.476,0.515]	chr16	614592	1	SS5_PROX	SS5_PROX:INTRON	TERF2IP	ENSG00000166848.7	ENST00000300086.5:ENST00000653858.1:ENST00000569234.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	76	2	2.77151	3.2385200000000003	3.70553	0.00288481	3.44823e-4	0.0475859	0.0165103
chr2	38353966	38354066	1099111	0	-	0.52	(0.515,0.57]	chr2	117864	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ATL2	ENSG00000119787.14	ENST00000378954.9:ENST00000406122.5:ENST00000405384.6:ENST00000402054.5:ENST00000419554.6:ENST00000651368.1:ENST00000452935.6:ENST00000449130.5:ENST00000443098.5:ENST00000456736.5:ENST00000472097.1:ENST00000451483.1:ENST00000486927.1:ENST00000416222.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	33	2	1.79136	3.23852	4.68568	0.0638444	0.00270027	0.177811	0.0479115
chr3	100294486	100294586	1465909	0	+	0.53	(0.515,0.57]	chr3	153619	34	INTRON	INTRON	TBC1D23	ENSG00000036054.13	ENST00000394144.9:ENST00000344949.9:ENST00000486274.5:ENST00000475134.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	33	2	1.79136	3.23852	4.68568	0.0638444	0.00270027	0.177811	0.0479115
chr3	191478282	191478382	1590711	0	+	0.53	(0.515,0.57]	chr3	164647	42	INTRON	INTRON	ENSG00000223812	ENSG00000223812.8	ENST00000657540.1:ENST00000439804.6:ENST00000663647.1:ENST00000668751.1:ENST00000666632.1:ENST00000664732.1:ENST00000662007.1:ENST00000641158.1:ENST00000664994.1:ENST00000669884.1:ENST00000642133.1:ENST00000656380.1:ENST00000641055.1:ENST00000662578.1:ENST00000661668.1:ENST00000658347.1:ENST00000661029.1:ENST00000651548.2:ENST00000669360.1:ENST00000653490.1:ENST00000656942.1:ENST00000666456.1:ENST00000668276.1:ENST00000671595.1:ENST00000660290.1	lncRNA	lncRNA	lncRNA	lncRNA	2	33	2	1.79136	3.23852	4.68568	0.0638444	0.00270027	0.177811	0.0479115
chr2	190918524	190918623	959865	0	+	0.333333	(0.32,0.35]	chr2	104198	48	INTRON	INTRON	GLS	ENSG00000115419.13	ENST00000320717.8:ENST00000338435.8:ENST00000417154.5:ENST00000461965.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	60	2	1.57911	3.238395	4.89768	0.0313129	0.00793135	0.144381	0.076155
chr10	21602835	21602935	4405105	0	+	0.52	(0.515,0.57]	chr10	406466	70	INTRON	INTRON	MLLT10	ENSG00000078403.17	ENST00000651097.1:ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000650772.1:ENST00000651298.1:ENST00000495130.5:ENST00000377059.7:ENST00000652258.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	25	2	2.43589	3.2383750000000004	4.04086	0.0370871	0.0197045	0.139194	0.120063
chr11	12690846	12690946	4739742	0	+	0.52	(0.515,0.57]	chr11	439061	149	INTRON	INTRON	TEAD1	ENSG00000187079.20	ENST00000527636.7:ENST00000527376.3:ENST00000334310.10:ENST00000527575.6	protein_coding	protein_coding	protein_coding	protein_coding	1	25	2	2.43589	3.2383750000000004	4.04086	0.0370871	0.0197045	0.139194	0.120063
chr11	68745810	68745909	4973727	0	-	0.555556	(0.515,0.57]	chr11	469616	3	INTRON	INTRON	TESMIN	ENSG00000132749.11	ENST00000255087.10:ENST00000540869.5:ENST00000443940.6:ENST00000544963.1:ENST00000538944.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	25	2	2.43589	3.2383750000000004	4.04086	0.0370871	0.0197045	0.139194	0.120063
chr12	11653956	11654056	5076643	0	+	0.52	(0.515,0.57]	chr12	480040	34	INTRON	INTRON	ETV6	ENSG00000139083.11	ENST00000396373.9:ENST00000541426.1:ENST00000544715.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	25	2	2.43589	3.2383750000000004	4.04086	0.0370871	0.0197045	0.139194	0.120063
chr12	132720277	132720377	5252064	0	+	0.52	(0.515,0.57]	chr12	499611	2	SS3_PROX	SS3_PROX:INTRON	PGAM5	ENSG00000247077.7	ENST00000498926.7:ENST00000543955.5:ENST00000454808.2	protein_coding	protein_coding	protein_coding	protein_coding	1	25	2	2.43589	3.2383750000000004	4.04086	0.0370871	0.0197045	0.139194	0.120063
chr15	90717740	90717840	6100914	0	+	0.52	(0.515,0.57]	chr15	580847	3	SS5_PROX	SS5_PROX:INTRON	BLM	ENSG00000197299.13	ENST00000355112.8:ENST00000648453.1:ENST00000681142.1:ENST00000560509.5:ENST00000559724.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	25	2	2.43589	3.2383750000000004	4.04086	0.0370871	0.0197045	0.139194	0.120063
chr16	81461012	81461112	6405159	0	+	0.55	(0.515,0.57]	chr16	615026	151	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8	protein_coding	protein_coding	protein_coding	protein_coding	1	25	2	2.43589	3.2383750000000004	4.04086	0.0370871	0.0197045	0.139194	0.120063
chr17	66463404	66463504	6663906	0	+	0.52	(0.515,0.57]	chr17	650326	992	INTRON	INTRON	PRKCA	ENSG00000154229.12	ENST00000413366.8:ENST00000578063.5:ENST00000284384.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	25	2	2.43589	3.2383750000000004	4.04086	0.0370871	0.0197045	0.139194	0.120063
chr19	10151197	10151297	7134402	0	-	0.54	(0.515,0.57]	chr19	719132	4	SS5_PROX	SS5_PROX:INTRON	DNMT1	ENSG00000130816.17	ENST00000586667.2:ENST00000340748.8:ENST00000359526.9:ENST00000592705.5:ENST00000679103.1:ENST00000677634.1:ENST00000676820.1:ENST00000677250.1:ENST00000677013.1:ENST00000677685.1:ENST00000677616.1:ENST00000676604.1:ENST00000678024.1:ENST00000676868.1:ENST00000677783.1:ENST00000678694.1:ENST00000679100.1:ENST00000678647.1:ENST00000676610.1:ENST00000678804.1:ENST00000679313.1:ENST00000677946.1:ENST00000586799.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	25	2	2.43589	3.2383750000000004	4.04086	0.0370871	0.0197045	0.139194	0.120063
chr2	121734630	121734726	1222478	0	-	0.53125	(0.515,0.57]	chr2	130092	21	INTRON	INTRON	NIFK	ENSG00000155438.12	ENST00000285814.9:ENST00000447132.5:ENST00000451734.1:ENST00000477693.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	25	2	2.43589	3.2383750000000004	4.04086	0.0370871	0.0197045	0.139194	0.120063
chr3	57759948	57760047	1435672	0	+	0.545455	(0.515,0.57]	chr3	151661	17	INTRON	INTRON	SLMAP	ENSG00000163681.16	ENST00000295951.7:ENST00000659926.1:ENST00000659705.1:ENST00000671191.1:ENST00000667800.1:ENST00000655012.1:ENST00000428312.6:ENST00000664084.1:ENST00000657480.1:ENST00000467901.1:ENST00000295952.7:ENST00000383718.7:ENST00000449503.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	25	2	2.43589	3.2383750000000004	4.04086	0.0370871	0.0197045	0.139194	0.120063
chr6	35057550	35057650	2850967	0	+	0.54	(0.515,0.57]	chr6	269290	30	INTRON	INTRON	ANKS1A	ENSG00000064999.15	ENST00000360359.5:ENST00000649117.1	protein_coding	protein_coding	protein_coding	protein_coding	1	25	2	2.43589	3.2383750000000004	4.04086	0.0370871	0.0197045	0.139194	0.120063
chr16	262761	262858	6271907	0	+	0.391753	(0.378,0.408]	chr16	598432	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	FAM234A	ENSG00000167930.17	ENST00000301679.7:ENST00000666018.1:ENST00000653392.1:ENST00000659283.1:ENST00000654053.1:ENST00000399932.8:ENST00000301678.7:ENST00000600536.1:ENST00000424016.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	106	2	3.16956	3.238365	3.30717	5.70211e-4	1.8574e-4	0.0220524	0.0118964
chr17	57316325	57316425	6633352	0	+	0.47	(0.44,0.476]	chr17	648024	56	INTRON	INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000581776.5:ENST00000674961.1:ENST00000582453.5:ENST00000675656.1:ENST00000322684.7:ENST00000579590.5:ENST00000676073.1:ENST00000675822.1:ENST00000442934.6:ENST00000579180.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	91	2	2.6062	3.238215	3.87023	0.00148054	2.32199e-4	0.0353633	0.0139633
chr8	102383402	102383502	4012463	0	-	0.5	(0.476,0.515]	chr8	367237	214	INTRON	INTRON	UBR5	ENSG00000104517.13	ENST00000520539.6:ENST00000220959.8:ENST00000521922.5	protein_coding	protein_coding	protein_coding	protein_coding	4	49	2	1.78315	3.238175	4.6932	0.0215899	0.00753088	0.123836	0.074841
chr6	16268216	16268316	2826272	0	+	0.48	(0.476,0.515]	chr6	265366	97	INTRON	INTRON	GMPR	ENSG00000137198.10	ENST00000259727.5:ENST00000543191.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	106	2	2.17892	3.237865	4.29681	0.0046578	2.44502e-5	0.0629753	0.00406051
chr5	138574270	138574359	2732906	0	-	0.382022	(0.378,0.408]	chr5	257501	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HSPA9	ENSG00000113013.16	ENST00000677693.1:ENST00000677064.1:ENST00000678300.1:ENST00000677425.1:ENST00000649578.2:ENST00000677988.1:ENST00000297185.9:ENST00000677527.1:ENST00000678794.1:ENST00000677553.1:ENST00000678384.1:ENST00000678051.1:ENST00000677066.1:ENST00000649692.2:ENST00000678551.1:ENST00000524109.2:ENST00000507115.6:ENST00000507097.5:ENST00000504902.6:ENST00000508003.2:ENST00000506477.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	49	2	1.66594	3.23781	4.80968	0.0320222	0.00679828	0.144995	0.0711802
chr21	38049610	38049710	7463377	0	-	0.28	[0,0.28]	chr21	760277	391	INTRON	INTRON	DSCR4	ENSG00000184029.9	ENST00000398948.5	lncRNA	lncRNA	lncRNA	lncRNA	2	82	2	3.13926	3.237735	3.33621	0.00563224	0.00427056	0.0678837	0.0573912
chr10	125093805	125093904	4713668	0	-	0.50505	(0.476,0.515]	chr10	434903	51	INTRON	INTRON	CTBP2	ENSG00000175029.17	ENST00000337195.9:ENST00000411419.6:ENST00000494626.6:ENST00000531469.5:ENST00000460976.5:ENST00000476817.1:ENST00000530884.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	106	2	2.48496	3.23756	3.99016	0.00143091	7.96444e-5	0.0340925	0.00742553
chr2	70086443	70086543	1151259	0	-	0.65	(0.57,1]	chr2	122943	10	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	PCBP1-AS1	ENSG00000179818.16	ENST00000682294.1:ENST00000684630.1:ENST00000435880.6:ENST00000628659.2:ENST00000628308.2:ENST00000629603.2:ENST00000629836.2:ENST00000626842.2:ENST00000457076.5:ENST00000628667.2:ENST00000631110.2:ENST00000626609.2:ENST00000413436.5:ENST00000628147.2:ENST00000631107.2:ENST00000415222.5:ENST00000685127.1:ENST00000684907.1:ENST00000685079.1:ENST00000687866.1:ENST00000692564.1:ENST00000692333.1:ENST00000691987.1:ENST00000601431.6:ENST00000686800.1:ENST00000684857.1:ENST00000688473.1:ENST00000627074.2:ENST00000599673.5:ENST00000629178.2:ENST00000596028.5:ENST00000452431.5:ENST00000423402.5:ENST00000629188.2:ENST00000434781.5:ENST00000654878.1:ENST00000659586.1:ENST00000657575.2:ENST00000689275.1:ENST00000692733.1:ENST00000654336.1:ENST00000626509.3:ENST00000653064.1:ENST00000656326.1:ENST00000668711.1:ENST00000659305.1:ENST00000654601.1:ENST00000663375.1:ENST00000654958.1:ENST00000665838.1:ENST00000653606.1:ENST00000659941.1:ENST00000669583.1:ENST00000660903.1:ENST00000653596.1:ENST00000661703.1:ENST00000655058.1:ENST00000366234.7:ENST00000625518.2:ENST00000425333.5:ENST00000413069.5:ENST00000685037.1:ENST00000458698.6:ENST00000670786.1:ENST00000413791.5:ENST00000688311.1:ENST00000691287.1:ENST00000666167.1:ENST00000667307.1:ENST00000437019.2:ENST00000654716.1:ENST00000439670.6:ENST00000660404.2:ENST00000656852.1:ENST00000667952.1:ENST00000662224.1:ENST00000664533.1:ENST00000670313.1:ENST00000626558.3:ENST00000670974.1:ENST00000664014.1:ENST00000668191.1:ENST00000664754.1:ENST00000662103.1:ENST00000629943.3:ENST00000625788.3:ENST00000630377.2:ENST00000662425.1:ENST00000596573.5:ENST00000594548.5	lncRNA	lncRNA	lncRNA	lncRNA	3	42	2	2.99147	3.23742	3.48337	6.75142e-4	6.20854e-4	0.0237705	0.0223951
chr1	16330901	16331000	382404	0	-	0.40404	(0.378,0.408]	chr1	44888	151	INTRON	INTRON	FBXO42	ENSG00000037637.11	ENST00000375592.8	protein_coding	protein_coding	protein_coding	protein_coding	4	51	2	1.89052	3.2373950000000002	4.58427	0.0148147	0.0128325	0.106702	0.0926667
chr19	21760129	21760228	7159231	0	-	0.343434	(0.32,0.35]	chr19	723737	62	INTRON	INTRON	ZNF100	ENSG00000197020.12	ENST00000358296.11:ENST00000598026.1:ENST00000596452.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	66	2	2.89743	3.2373700000000003	3.57731	0.0127608	7.67492e-4	0.0926667	0.0254532
chr7	152067600	152067700	3449930	0	+	0.43	(0.408,0.44]	chr7	322435	395	INTRON	INTRON	GALNT11	ENSG00000178234.13	ENST00000430044.7:ENST00000482812.1:ENST00000431668.1:ENST00000446096.5:ENST00000447778.5:ENST00000423337.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	42	2	1.8749	3.237345	4.59979	0.0264246	0.0109537	0.133676	0.0873034
chr7	157264897	157264997	3455231	0	+	0.33	(0.32,0.35]	chr7	323025	75	INTRON	INTRON	UBE3C	ENSG00000009335.18	ENST00000348165.10:ENST00000470408.5:ENST00000474153.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	42	2	1.83416	3.23731	4.64046	0.0631198	0.00724767	0.176946	0.0756327
chr16	81002433	81002533	6530653	0	-	0.29	(0.28,0.32]	chr16	632677	7	INTRON	INTRON	CMC2	ENSG00000103121.9	ENST00000219400.8:ENST00000486645.5:ENST00000570195.5:ENST00000569187.5:ENST00000570086.5:ENST00000565650.5:ENST00000567593.5:ENST00000568228.5:ENST00000565914.5:ENST00000565108.5:ENST00000565925.5:ENST00000564174.5:ENST00000565613.5:ENST00000562713.3:ENST00000562828.5:ENST00000630396.1:ENST00000565514.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	40	2	1.96475	3.23728	4.50981	0.0428385	0.0275554	0.162255	0.123904
chr2	171142652	171142752	1263917	0	-	0.29	(0.28,0.32]	chr2	133921	244	INTRON	INTRON	TLK1	ENSG00000198586.14	ENST00000431350.7:ENST00000360843.7:ENST00000359766.7:ENST00000521943.5:ENST00000409443.6:ENST00000413010.5:ENST00000470340.1:ENST00000466220.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	40	2	1.96475	3.23728	4.50981	0.0428385	0.0275554	0.162255	0.123904
chr3	87942674	87942774	1456512	0	+	0.47	(0.44,0.476]	chr3	153149	1202	INTRON	INTRON	HTR1F	ENSG00000179097.7	ENST00000319595.7	protein_coding	protein_coding	protein_coding	protein_coding	2	37	2	1.77101	3.23728	4.70355	0.0693975	0.00383786	0.184298	0.0562562
chr7	138474498	138474598	3434783	0	+	0.31	(0.28,0.32]	chr7	319959	128	INTRON	INTRON	TRIM24	ENSG00000122779.18	ENST00000343526.9:ENST00000415680.6:ENST00000497516.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	40	2	1.96475	3.23728	4.50981	0.0428385	0.0275554	0.162255	0.123904
chr9	135960524	135960624	4372564	0	-	0.46	(0.44,0.476]	chr9	402554	1	SS5_PROX	SS5_PROX:INTRON	UBAC1	ENSG00000130560.9	ENST00000371756.4:ENST00000478485.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	196	2	2.74833	3.237215	3.7261	4.07917e-4	4.46196e-7	0.0185763	3.517e-4
chr1	8788106	8788206	373489	0	-	0.31	(0.28,0.32]	chr1	43549	344	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000656437.1:ENST00000659924.1	protein_coding	protein_coding	protein_coding	protein_coding	2	71	2	3.12332	3.2372	3.35108	0.00698537	0.00221345	0.0718189	0.0435144
chr16	68136210	68136310	6370735	0	+	0.29	(0.28,0.32]	chr16	612201	92	INTRON	INTRON	NFATC3	ENSG00000072736.19	ENST00000563319.5:ENST00000569766.5:ENST00000553077.5:ENST00000566301.5:ENST00000549350.5:ENST00000566893.5:ENST00000575270.5:ENST00000561714.5:ENST00000346183.8:ENST00000568466.6:ENST00000539828.6:ENST00000562171.1:ENST00000349223.9:ENST00000329524.8:ENST00000379165.8:ENST00000562926.5:ENST00000570212.5:ENST00000563796.5:ENST00000567152.5:ENST00000563288.5:ENST00000535127.2:ENST00000565750.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	41	2	2.13651	3.2370799999999997	4.33765	0.039714	0.0265696	0.143072	0.134088
chr16	81481873	81481973	6405368	0	+	0.54	(0.515,0.57]	chr16	615026	360	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8	protein_coding	protein_coding	protein_coding	protein_coding	4	79	2	2.496	3.237005	3.97801	0.00225531	9.14583e-5	0.0436331	0.00850096
chr18	2662957	2663057	6864932	0	+	0.35	(0.32,0.35]	chr18	679940	63	INTRON	INTRON	SMCHD1	ENSG00000101596.17	ENST00000320876.11:ENST00000688342.1:ENST00000684915.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	38	2	2.01768	3.236985	4.45629	0.0361337	0.0246089	0.152563	0.12011
chr2	32511433	32511533	732389	0	+	0.34	(0.32,0.35]	chr2	84568	4	INTRON	INTRON	BIRC6	ENSG00000115760.15	ENST00000421745.7:ENST00000648282.1:ENST00000496555.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	38	2	2.01768	3.236985	4.45629	0.0361337	0.0246089	0.152563	0.12011
chr1	66971306	66971382	139915	0	+	0.263158	[0,0.28]	chr1	15694	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MIER1	ENSG00000198160.15	ENST00000355977.10:ENST00000371018.7:ENST00000357692.6:ENST00000371016.5:ENST00000371014.5:ENST00000401041.6:ENST00000355356.3:ENST00000401042.7	protein_coding	protein_coding	protein_coding	protein_coding	2	44	2	2.00649	3.2368749999999995	4.46726	0.0427997	0.040391	0.161534	0.148082
chr2	182923103	182923202	1284838	0	-	0.252525	[0,0.28]	chr2	135263	141	UTR3	UTR3:EXON_MRNA	NCKAP1	ENSG00000061676.15	ENST00000361354.9	protein_coding	protein_coding	protein_coding	protein_coding	2	44	2	2.00649	3.2368749999999995	4.46726	0.0427997	0.040391	0.161534	0.148082
chr7	148870991	148871085	3670630	0	-	0.265957	[0,0.28]	chr7	340631	3	UTR5	UTR5:EXON_MRNA:INTRON	EZH2	ENSG00000106462.12	ENST00000683292.1:ENST00000320356.7:ENST00000492143.5:ENST00000478654.5:ENST00000350995.6:ENST00000460911.5:ENST00000683744.1:ENST00000682317.1:ENST00000682263.1:ENST00000684300.1:ENST00000476773.5:ENST00000483967.5:ENST00000498186.5:ENST00000483012.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	53	2	1.71402	3.2368300000000003	4.75964	0.047753	0.0232081	0.170327	0.118148
chr5	177142102	177142202	2553783	0	+	0.42	(0.408,0.44]	chr5	243927	48	INTRON	INTRON	NSD1	ENSG00000165671.22	ENST00000508896.6:ENST00000689549.1:ENST00000354179.9:ENST00000686993.1:ENST00000689326.1:ENST00000439151.7:ENST00000510954.6:ENST00000689345.1:ENST00000347982.9:ENST00000687453.1:ENST00000685206.1:ENST00000638627.3:ENST00000644863.2:ENST00000688613.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	38	2	1.94273	3.236805	4.53088	0.0456237	0.00669275	0.149888	0.0738715
chr1	245994761	245994861	675578	0	-	0.39	(0.378,0.408]	chr1	79713	63	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000391836.3:ENST00000464398.1:ENST00000453676.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	60	2	3.1136	3.23679	3.35998	0.00443339	0.00230615	0.061054	0.0428247
chr15	75866756	75866856	6065296	0	+	0.36	(0.35,0.378]	chr15	577549	64	INTRON	INTRON	UBE2Q2	ENSG00000140367.12	ENST00000569423.5:ENST00000267938.9:ENST00000561723.5:ENST00000561851.5:ENST00000426727.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	36	2	1.82887	3.23672	4.64457	0.0584878	0.012652	0.189395	0.0926667
chr14	30918465	30918565	5856785	0	-	0.46	(0.44,0.476]	chr14	556454	1	SS5_PROX	SS5_PROX:INTRON	STRN3	ENSG00000196792.12	ENST00000355683.9:ENST00000357479.10:ENST00000555358.5:ENST00000366206.2:ENST00000556577.1:ENST00000554991.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	192	2	3.22445	3.23656	3.24867	2.93378e-5	1.3104e-5	0.00449807	0.00268119
chr19	5619828	5619926	7124334	0	-	0.316327	(0.28,0.32]	chr19	717040	30	INTRON	INTRON	SAFB2	ENSG00000130254.12	ENST00000252542.9:ENST00000591120.1:ENST00000590262.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	45	2	1.86684	3.2364699999999997	4.6061	0.0605813	0.0102724	0.171122	0.089002
chr5	109347018	109347118	2701734	0	-	0.37	(0.35,0.378]	chr5	254322	18	INTRON	INTRON	PJA2	ENSG00000198961.10	ENST00000361557.4:ENST00000361189.7	protein_coding	protein_coding	protein_coding	protein_coding	2	62	2	2.89003	3.236445	3.58286	0.0122391	6.77448e-4	0.0910127	0.0236287
chrX	49185855	49185955	7817117	0	-	0.46	(0.44,0.476]	chrX	797226	2	SS5_PROX	SS5_PROX:INTRON	PRICKLE3	ENSG00000012211.13	ENST00000599218.6:ENST00000376310.7:ENST00000376317.4:ENST00000611313.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	60	2	2.89047	3.23633	3.58219	0.00955699	8.57842e-4	0.0863913	0.0267428
chr19	55387231	55387284	7101075	0	+	0.433962	(0.408,0.44]	chr19	712399	1	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	RPL28	ENSG00000108107.15	ENST00000344063.7:ENST00000558815.5:ENST00000428193.6:ENST00000560583.5:ENST00000560055.5:ENST00000560881.5:ENST00000559463.5:ENST00000426763.3:ENST00000558131.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	96	2	2.26617	3.2363	4.20643	0.00649402	4.44752e-5	0.0734343	0.0057371
chr6	35657139	35657239	3087202	0	-	0.51	(0.476,0.515]	chr6	288789	139	INTRON	INTRON	FKBP5	ENSG00000096060.15	ENST00000536438.5:ENST00000539068.5:ENST00000357266.9:ENST00000542713.1	protein_coding	protein_coding	protein_coding	protein_coding	3	76	2	2.58253	3.23621	3.88989	0.00600101	1.35929e-4	0.0674604	0.0100405
chr9	136437908	136438007	4374550	0	-	0.50505	(0.476,0.515]	chr9	402933	25	EXON_LNCRNA	EXON_LNCRNA:INTRON	INPP5E	ENSG00000148384.14	ENST00000676019.1:ENST00000371712.4:ENST00000674513.1:ENST00000635815.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	76	2	2.58253	3.23621	3.88989	0.00600101	1.35929e-4	0.0674604	0.0100405
chrX	66212341	66212440	7673187	0	+	0.363636	(0.35,0.378]	chrX	785355	37	INTRON	INTRON	HEPH	ENSG00000089472.18	ENST00000519389.6:ENST00000683049.1:ENST00000458621.6:ENST00000684042.1:ENST00000343002.7:ENST00000336279.9:ENST00000441993.7:ENST00000419594.6:ENST00000682362.1:ENST00000425114.2:ENST00000682927.1:ENST00000683420.1:ENST00000684071.1:ENST00000684625.1:ENST00000684603.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	62	2	3.21677	3.23613	3.25549	0.00363602	0.00313804	0.0535085	0.0514466
chr16	88609551	88609644	6418660	0	+	0.537634	(0.515,0.57]	chr16	615826	1	INTRON	INTRON	ZC3H18	ENSG00000158545.16	ENST00000301011.10:ENST00000452588.6:ENST00000567085.1:ENST00000564161.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	42	2	1.97035	3.2356849999999997	4.50102	0.0195832	0.00510768	0.109483	0.0646039
chr19	10176694	10176791	7134685	0	-	0.546392	(0.515,0.57]	chr19	719220	7	INTRON	INTRON	DNMT1	ENSG00000130816.17	ENST00000340748.8:ENST00000359526.9:ENST00000592705.5:ENST00000679103.1:ENST00000677634.1:ENST00000676820.1:ENST00000677250.1:ENST00000677013.1:ENST00000677685.1:ENST00000677616.1:ENST00000676604.1:ENST00000678024.1:ENST00000676610.1:ENST00000678804.1:ENST00000679313.1:ENST00000677946.1:ENST00000586988.5:ENST00000588952.5:ENST00000588118.5:ENST00000592342.5:ENST00000592054.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	42	2	1.97035	3.2356849999999997	4.50102	0.0195832	0.00510768	0.109483	0.0646039
chr11	65437751	65437851	4805920	0	+	0.49	(0.476,0.515]	chr11	446554	151	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	37	844	2	2.96612	3.2356800000000003	3.50524	1.37651e-6	2.708e-9	7.65967e-4	1.4777e-5
chr16	74320580	74320680	6523054	0	-	0.37	(0.35,0.378]	chr16	631552	73	INTRON	INTRON	ENSG00000259972	ENSG00000259972.3	ENST00000565313.1:ENST00000561921.1	lncRNA	lncRNA	lncRNA	lncRNA	1	30	2	2.39939	3.2356249999999998	4.07186	0.0458078	0.0279478	0.149888	0.137011
chr2	38134797	38134896	748779	0	+	0.353535	(0.35,0.378]	chr2	85663	28	INTRON	INTRON	CYP1B1-AS1	ENSG00000232973.14	ENST00000628135.3:ENST00000627992.3:ENST00000653994.1:ENST00000620177.4:ENST00000629773.2:ENST00000629439.2:ENST00000630542.2:ENST00000660098.1:ENST00000653077.1:ENST00000660493.1:ENST00000657397.1:ENST00000413828.3:ENST00000610172.6:ENST00000585654.2	lncRNA	lncRNA	lncRNA	lncRNA	1	30	2	2.39939	3.2356249999999998	4.07186	0.0458078	0.0279478	0.149888	0.137011
chr20	36771270	36771347	7337857	0	-	0.376623	(0.35,0.378]	chr20	747687	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DSN1	ENSG00000149636.16	ENST00000426836.5:ENST00000373734.8:ENST00000480153.5:ENST00000473615.5:ENST00000373750.9:ENST00000448110.6:ENST00000373740.7:ENST00000447406.1:ENST00000438549.5:ENST00000492703.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	30	2	2.39939	3.2356249999999998	4.07186	0.0458078	0.0279478	0.149888	0.137011
chr22	40324238	40324338	7519673	0	+	0.39	(0.378,0.408]	chr22	768233	11	UTR3	UTR3:EXON_MRNA	TNRC6B	ENSG00000100354.21	ENST00000301923.13:ENST00000454349.7:ENST00000335727.13	protein_coding	protein_coding	protein_coding	protein_coding	4	95	2	2.53602	3.2356249999999998	3.93523	0.0020933	1.93873e-4	0.0424943	0.0127226
chr5	145804327	145804427	2746330	0	-	0.46	(0.44,0.476]	chr5	258695	74	INTRON	INTRON	PRELID2	ENSG00000186314.12	ENST00000683046.1:ENST00000334744.8:ENST00000394450.6:ENST00000505416.5:ENST00000511435.1	protein_coding	protein_coding	protein_coding	protein_coding	2	39	2	2.13779	3.2356249999999998	4.33346	0.0264596	0.0120349	0.122506	0.0962115
chr6	33301168	33301267	3082682	0	-	0.40404	(0.378,0.408]	chr6	288364	16	UTR3	UTR3:EXON_MRNA	TAPBP	ENSG00000231925.13	ENST00000434618.7	protein_coding	protein_coding	protein_coding	protein_coding	4	95	2	2.53602	3.2356249999999998	3.93523	0.0020933	1.93873e-4	0.0424943	0.0127226
chr1	35964754	35964854	71481	0	+	0.38	(0.378,0.408]	chr1	9138	185	INTRON	INTRON	AGO3	ENSG00000126070.20	ENST00000324350.9:ENST00000397828.3:ENST00000634486.1:ENST00000373191.9:ENST00000246314.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	26	2	2.36428	3.235445	4.10661	0.0441088	0.0399023	0.162255	0.143072
chr1	206645497	206645596	301743	0	+	0.383838	(0.378,0.408]	chr1	34677	61	INTRON	INTRON	DYRK3	ENSG00000143479.18	ENST00000367109.8:ENST00000367108.7:ENST00000489878.1:ENST00000649163.1:ENST00000441486.5:ENST00000367106.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	26	2	2.36428	3.235445	4.10661	0.0441088	0.0399023	0.162255	0.143072
chr15	50425347	50425443	6022223	0	+	0.385417	(0.378,0.408]	chr15	573926	3	INTRON	INTRON	USP8	ENSG00000138592.14	ENST00000560297.5:ENST00000396444.7:ENST00000560954.5:ENST00000425032.7:ENST00000558892.1:ENST00000307179.9:ENST00000559329.5:ENST00000560885.5:ENST00000560730.5:ENST00000625664.2:ENST00000560982.5:ENST00000561211.5	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:nonsense_mediated_decay:processed_transcript	1	26	2	2.36428	3.235445	4.10661	0.0441088	0.0399023	0.162255	0.143072
chr16	3716422	3716522	6434467	0	-	0.38	(0.378,0.408]	chr16	619383	56	INTRON	INTRON	TRAP1	ENSG00000126602.11	ENST00000246957.10:ENST00000538171.5:ENST00000571804.5:ENST00000574941.5:ENST00000576106.5:ENST00000571011.1:ENST00000570403.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	26	2	2.36428	3.235445	4.10661	0.0441088	0.0399023	0.162255	0.143072
chr17	32008432	32008532	6596339	0	+	0.38	(0.378,0.408]	chr17	641625	3	SS5_PROX	SS5_PROX:INTRON	LRRC37B	ENSG00000185158.12	ENST00000583342.1:ENST00000579206.5:ENST00000543378.6:ENST00000581370.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	26	2	2.36428	3.235445	4.10661	0.0441088	0.0399023	0.162255	0.143072
chr2	23751746	23751846	1079162	0	-	0.39	(0.378,0.408]	chr2	115171	32	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ATAD2B	ENSG00000119778.15	ENST00000238789.10:ENST00000381024.4:ENST00000474583.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	26	2	2.36428	3.235445	4.10661	0.0441088	0.0399023	0.162255	0.143072
chr20	50142303	50142403	7354242	0	-	0.4	(0.378,0.408]	chr20	749936	110	INTRON	INTRON	PEDS1	ENSG00000240849.11	ENST00000371652.9:ENST00000371650.9:ENST00000453505.6:ENST00000371658.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	26	2	2.36428	3.235445	4.10661	0.0441088	0.0399023	0.162255	0.143072
chr3	51482721	51482820	1697106	0	-	0.383838	(0.378,0.408]	chr3	174416	114	INTRON	INTRON	DCAF1	ENSG00000145041.16	ENST00000504652.5:ENST00000423656.5:ENST00000684031.1:ENST00000335891.5	protein_coding	protein_coding	protein_coding	protein_coding	1	26	2	2.36428	3.235445	4.10661	0.0441088	0.0399023	0.162255	0.143072
chr3	195536253	195536352	1896155	0	-	0.393939	(0.378,0.408]	chr3	189756	60	INTRON	INTRON	PPP1R2	ENSG00000184203.8	ENST00000618156.5:ENST00000438848.5:ENST00000413183.3:ENST00000625807.1:ENST00000462906.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	26	2	2.36428	3.235445	4.10661	0.0441088	0.0399023	0.162255	0.143072
chr5	138162146	138162246	2731240	0	-	0.38	(0.378,0.408]	chr5	257105	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	BRD8	ENSG00000112983.18	ENST00000254900.10:ENST00000402931.5:ENST00000230901.9:ENST00000454473.5:ENST00000418329.5:ENST00000441656.5:ENST00000411594.6:ENST00000512140.5:ENST00000515014.5:ENST00000506167.5:ENST00000511898.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	26	2	2.36428	3.235445	4.10661	0.0441088	0.0399023	0.162255	0.143072
chr7	107484841	107484941	3612234	0	-	0.38	(0.378,0.408]	chr7	336698	40	INTRON	INTRON	COG5	ENSG00000164597.15	ENST00000297135.9:ENST00000347053.8:ENST00000393603.7:ENST00000475638.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	26	2	2.36428	3.235445	4.10661	0.0441088	0.0399023	0.162255	0.143072
chr9	124974376	124974476	4350274	0	-	0.38	(0.378,0.408]	chr9	399443	1	SS3_PROX	SS3_PROX:INTRON	SCAI	ENSG00000173611.18	ENST00000336505.11:ENST00000373549.8:ENST00000477186.5:ENST00000467917.5:ENST00000494102.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	26	2	2.36428	3.235445	4.10661	0.0441088	0.0399023	0.162255	0.143072
chrX	24936445	24936545	7634161	0	+	0.38	(0.378,0.408]	chrX	781809	55	INTRON	INTRON	POLA1	ENSG00000101868.13	ENST00000672178.1:ENST00000379068.8:ENST00000379059.7:ENST00000611764.2:ENST00000679301.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	26	2	2.36428	3.235445	4.10661	0.0441088	0.0399023	0.162255	0.143072
chr19	5640894	5640993	7005475	0	+	0.40404	(0.378,0.408]	chr19	694957	141	INTRON	INTRON	SAFB	ENSG00000160633.13	ENST00000589863.5:ENST00000588852.2:ENST00000591666.5:ENST00000292123.9:ENST00000592224.5:ENST00000586934.5:ENST00000454510.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	42	2	1.59317	3.235395	4.87762	0.0603812	0.00553849	0.19151	0.0648867
chr10	68488547	68488629	4639886	0	-	0.439024	(0.408,0.44]	chr10	426762	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	SLC25A16	ENSG00000122912.15	ENST00000609923.6:ENST00000265870.7:ENST00000493963.5:ENST00000608053.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	76	2	2.9826	3.235265	3.48793	0.00130904	9.23082e-4	0.0331539	0.0278392
chr5	88254634	88254734	2669600	0	-	0.43	(0.408,0.44]	chr5	252698	37	INTRON	INTRON	TMEM161B	ENSG00000164180.14	ENST00000514135.5:ENST00000296595.11:ENST00000511087.5:ENST00000510089.5:ENST00000506536.5:ENST00000512429.5:ENST00000507872.1:ENST00000509387.5:ENST00000503755.5:ENST00000513487.5:ENST00000515477.5:ENST00000503194.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	76	2	2.9826	3.235265	3.48793	0.00130904	9.23082e-4	0.0331539	0.0278392
chr16	16548800	16548900	6311350	0	+	0.51	(0.476,0.515]	chr16	604098	488	INTRON	INTRON	ENSG00000260126	ENSG00000260126.2	ENST00000567465.2	lncRNA	lncRNA	lncRNA	lncRNA	14	332	2	2.79073	3.2352	3.67967	1.85837e-5	2.54525e-7	0.00329969	2.695e-4
chr10	73049273	73049371	4647363	0	-	0.336735	(0.32,0.35]	chr10	427518	18	INTRON	INTRON	P4HA1	ENSG00000122884.13	ENST00000394890.7:ENST00000307116.6:ENST00000373008.6:ENST00000440381.5:ENST00000263556.3	protein_coding	protein_coding	protein_coding	protein_coding	3	47	2	1.93031	3.2350950000000003	4.53988	0.0231421	0.0202178	0.126939	0.109913
chr15	90760687	90760782	6101354	0	+	0.431579	(0.408,0.44]	chr15	580888	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	BLM	ENSG00000197299.13	ENST00000355112.8:ENST00000648453.1:ENST00000681142.1:ENST00000560509.5:ENST00000559724.5:ENST00000680772.1:ENST00000558599.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	57	2	3.10641	3.2350950000000003	3.36378	0.00555646	0.0016048	0.0648867	0.0367961
chr1	144056417	144056516	209675	0	+	0.444444	(0.44,0.476]	chr1	22879	6	INTRON	INTRON	SRGAP2D	ENSG00000270872.2	ENST00000605551.2	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	2	57	2	2.9195	3.23509	3.55068	0.0102021	7.06861e-4	0.0850389	0.0241881
chr1	204530383	204530483	297558	0	+	0.37	(0.35,0.378]	chr1	34274	3	SS3_PROX	SS3_PROX:INTRON	MDM4	ENSG00000198625.14	ENST00000367183.7:ENST00000391947.6:ENST00000454264.6:ENST00000612738.4:ENST00000614459.4:ENST00000616250.4:ENST00000470797.5:ENST00000367182.8:ENST00000463049.5:ENST00000470908.5:ENST00000471783.1:ENST00000367180.5:ENST00000507825.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	36	2	1.90405	3.234775	4.5655	0.0482651	0.0155464	0.171852	0.100909
chr19	19407918	19408018	7035368	0	+	0.36	(0.35,0.378]	chr19	701433	15	INTRON	INTRON	GATAD2A	ENSG00000167491.18	ENST00000494516.6:ENST00000360315.7:ENST00000609040.5:ENST00000417582.6:ENST00000683918.1:ENST00000448576.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	36	2	1.90405	3.234775	4.5655	0.0482651	0.0155464	0.171852	0.100909
chr3	9427159	9427256	1359186	0	+	0.360825	(0.35,0.378]	chr3	142683	6	INTRON	INTRON	SETD5	ENSG00000168137.20	ENST00000402198.7:ENST00000431285.5:ENST00000683012.1:ENST00000463180.5:ENST00000478475.5:ENST00000415650.5:ENST00000682536.1:ENST00000663774.1:ENST00000665872.1:ENST00000666307.1:ENST00000693430.1:ENST00000691925.1:ENST00000684606.1:ENST00000691175.1:ENST00000688835.1:ENST00000683262.1:ENST00000443339.5:ENST00000406341.5:ENST00000670063.1:ENST00000468208.2:ENST00000691299.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	36	2	1.90405	3.234775	4.5655	0.0482651	0.0155464	0.171852	0.100909
chr10	110118736	110118836	4519512	0	+	0.36	(0.35,0.378]	chr10	416821	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ADD3	ENSG00000148700.15	ENST00000360162.7:ENST00000277900.12:ENST00000356080.9:ENST00000486014.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	37	2	2.17079	3.2345900000000003	4.29839	0.0294717	0.0225978	0.128055	0.124921
chr2	167905771	167905871	1258860	0	-	0.37	(0.35,0.378]	chr2	133340	46	INTRON	INTRON	B3GALT1-AS1	ENSG00000235335.3	ENST00000430546.2:ENST00000657553.1:ENST00000670221.1:ENST00000436982.2	lncRNA	lncRNA	lncRNA	lncRNA	4	50	2	1.54563	3.23459	4.92355	0.046845	0.00573514	0.167716	0.0657377
chr12	22675149	22675248	5095255	0	+	0.494949	(0.476,0.515]	chr12	481274	11	INTRON	INTRON	ETNK1	ENSG00000139163.16	ENST00000671733.1:ENST00000266517.9:ENST00000538218.2:ENST00000673406.1:ENST00000673188.1:ENST00000544191.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	58	2	3.01197	3.23454	3.45711	0.00633162	0.00140905	0.0722266	0.0340865
chr6	131598086	131598186	3221349	0	-	0.29	(0.28,0.32]	chr6	299366	4	SS5_PROX	SS5_PROX:INTRON	MED23	ENSG00000112282.18	ENST00000354577.8:ENST00000368068.8:ENST00000368060.7:ENST00000368058.5	protein_coding	protein_coding	protein_coding	protein_coding	5	133	2	2.17579	3.23453	4.29327	0.00757046	2.65258e-5	0.0749063	0.00405913
chr10	86771909	86772009	4479550	0	+	0.34	(0.32,0.35]	chr10	412292	146	INTRON	INTRON	BMPR1A	ENSG00000107779.14	ENST00000638429.1:ENST00000372037.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	31	2	2.30673	3.234295	4.16186	0.0584434	0.026079	0.167723	0.133676
chr18	62776600	62776700	6923176	0	+	0.49	(0.476,0.515]	chr18	685172	590	INTRON	INTRON	PHLPP1	ENSG00000081913.14	ENST00000262719.10	protein_coding	protein_coding	protein_coding	protein_coding	2	57	2	3.13389	3.234025	3.33416	0.00405473	0.00230489	0.0578376	0.0428247
chr2	61403810	61403910	1129881	0	-	0.51	(0.476,0.515]	chr2	121485	82	INTRON	INTRON	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000453133.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	57	2	3.13389	3.234025	3.33416	0.00405473	0.00230489	0.0578376	0.0428247
chr21	34878158	34878257	7447166	0	-	0.292929	(0.28,0.32]	chr21	759849	182	INTRON	INTRON	RUNX1	ENSG00000159216.19	ENST00000300305.7:ENST00000675419.1:ENST00000437180.5:ENST00000344691.8:ENST00000482318.5:ENST00000399240.5:ENST00000358356.9:ENST00000399237.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	129	2	2.9689	3.23398	3.49906	0.00194987	9.90686e-5	0.0400465	0.00838338
chr21	34870966	34871065	7447094	0	-	0.383838	(0.378,0.408]	chr21	759849	110	INTRON	INTRON	RUNX1	ENSG00000159216.19	ENST00000300305.7:ENST00000675419.1:ENST00000437180.5:ENST00000344691.8:ENST00000482318.5:ENST00000399240.5:ENST00000358356.9:ENST00000399237.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	42	2	1.65821	3.2339450000000003	4.80968	0.0506302	0.00679828	0.17547	0.0711802
chr22	17973716	17973816	7550162	0	-	0.59	(0.57,1]	chr22	771756	665	INTRON	INTRON	MICAL3	ENSG00000243156.9	ENST00000441493.7:ENST00000672019.1:ENST00000495076.5:ENST00000424046.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	23	2	1.9042	3.233925	4.56365	0.0476976	0.00129848	0.153019	0.0333764
chr22	49648229	49648329	7602570	0	-	0.61	(0.57,1]	chr22	778594	208	INTRON	INTRON	MIR3667HG	ENSG00000188511.13	ENST00000414287.5:ENST00000416411.1:ENST00000689875.1:ENST00000400023.5:ENST00000405854.5	lncRNA	lncRNA	lncRNA	lncRNA	2	23	2	1.9042	3.233925	4.56365	0.0476976	0.00129848	0.153019	0.0333764
chr3	143015285	143015379	1529215	0	+	0.297872	(0.28,0.32]	chr3	159347	5	INTRON	INTRON	U2SURP	ENSG00000163714.18	ENST00000600150.5:ENST00000488497.7:ENST00000493782.5:ENST00000473835.7:ENST00000461591.5:ENST00000493598.6:ENST00000463563.6:ENST00000470400.5:ENST00000465175.2:ENST00000485374.5:ENST00000491827.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	205	2	3.22329	3.23385	3.24441	6.28233e-4	1.26218e-5	0.023031	0.00264613
chr1	174889675	174889775	264452	0	+	0.5	(0.476,0.515]	chr1	30911	117	INTRON	INTRON	RABGAP1L	ENSG00000152061.24	ENST00000251507.8:ENST00000681986.1:ENST00000529145.6:ENST00000325589.9:ENST00000469553.6:ENST00000367687.5:ENST00000347255.6:ENST00000489615.5:ENST00000478442.5:ENST00000465412.5:ENST00000486220.5:ENST00000392064.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	27	2	2.13854	3.233845	4.32915	0.0776563	0.0124637	0.196285	0.0973643
chr10	46027031	46027131	4608908	0	-	0.51	(0.476,0.515]	chr10	424583	2	SS5_PROX	SS5_PROX:INTRON	NCOA4	ENSG00000266412.6	ENST00000581486.6:ENST00000585056.5:ENST00000580070.5:ENST00000578454.5:ENST00000579039.2	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	2.13854	3.233845	4.32915	0.0776563	0.0124637	0.196285	0.0973643
chr11	77785359	77785459	4995623	0	-	0.48	(0.476,0.515]	chr11	472047	203	INTRON	INTRON	RSF1	ENSG00000048649.14	ENST00000308488.11:ENST00000528095.5:ENST00000440064.2:ENST00000467567.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	27	2	2.13854	3.233845	4.32915	0.0776563	0.0124637	0.196285	0.0973643
chr16	23483982	23484078	6464309	0	-	0.510417	(0.476,0.515]	chr16	623860	6	INTRON	INTRON	GGA2	ENSG00000103365.15	ENST00000309859.8:ENST00000567468.5	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	2.13854	3.233845	4.32915	0.0776563	0.0124637	0.196285	0.0973643
chr17	42600293	42600392	6773565	0	-	0.50505	(0.476,0.515]	chr17	667221	33	INTRON	INTRON	RETREG3	ENSG00000141699.11	ENST00000589797.5:ENST00000309428.10:ENST00000585894.5:ENST00000586870.5:ENST00000585726.5:ENST00000591547.5:ENST00000593251.5:ENST00000588423.1:ENST00000586796.1:ENST00000590541.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	27	2	2.13854	3.233845	4.32915	0.0776563	0.0124637	0.196285	0.0973643
chr19	7929043	7929143	7130169	0	-	0.48	(0.476,0.515]	chr19	718300	2	INTRON	INTRON	TIMM44	ENSG00000104980.8	ENST00000270538.8:ENST00000595565.5:ENST00000595831.5:ENST00000598968.5:ENST00000599650.1:ENST00000598481.1:ENST00000595876.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	27	2	2.13854	3.233845	4.32915	0.0776563	0.0124637	0.196285	0.0973643
chr22	17897676	17897774	7549392	0	-	0.479592	(0.476,0.515]	chr22	771718	3	INTRON	INTRON	MICAL3	ENSG00000243156.9	ENST00000441493.7:ENST00000672019.1:ENST00000400561.6:ENST00000495076.5:ENST00000414725.6:ENST00000383094.7:ENST00000585038.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	27	2	2.13854	3.233845	4.32915	0.0776563	0.0124637	0.196285	0.0973643
chr8	66669487	66669586	3774909	0	+	0.484848	(0.476,0.515]	chr8	350072	14	INTRON	INTRON	C8orf44	ENSG00000288596.2	ENST00000521113.1:ENST00000661636.1:ENST00000521889.5	lncRNA	lncRNA	lncRNA	lncRNA	1	27	2	2.13854	3.233845	4.32915	0.0776563	0.0124637	0.196285	0.0973643
chrX	13334648	13334748	7622296	0	+	0.41	(0.408,0.44]	chrX	780326	8	EXON_LNCRNA	EXON_LNCRNA	LINC01203	ENSG00000226985.7	ENST00000669963.1:ENST00000661545.1	lncRNA	lncRNA	lncRNA	lncRNA	4	102	2	3.06698	3.2338050000000003	3.40063	8.51999e-4	1.06576e-4	0.0267428	0.00874587
chr2	20345718	20345818	1076736	0	-	0.59	(0.57,1]	chr2	115047	123	INTRON	INTRON	PUM2	ENSG00000055917.16	ENST00000361078.7:ENST00000442400.5:ENST00000420234.5:ENST00000429419.6:ENST00000432105.5:ENST00000446940.5:ENST00000424110.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	23	2	2.02391	3.233785	4.44366	0.0339274	0.00210922	0.134508	0.0425419
chr22	26583470	26583570	7565002	0	-	0.44	(0.408,0.44]	chr22	774054	179	INTRON	INTRON	TPST2	ENSG00000128294.16	ENST00000338754.9:ENST00000403880.5:ENST00000442495.5:ENST00000440953.5:ENST00000450022.1	protein_coding	protein_coding	protein_coding	protein_coding	6	119	2	2.28219	3.23369	4.18519	0.00215449	2.59215e-5	0.0417866	0.00400663
chr6	35466534	35466628	2853008	0	+	0.43617	(0.408,0.44]	chr6	269588	3	UTR3	UTR3:EXON_MRNA	FANCE	ENSG00000112039.6	ENST00000229769.3:ENST00000648059.1:ENST00000696265.1:ENST00000696264.1:ENST00000696266.1:ENST00000696267.1:ENST00000696269.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	52	2	1.40374	3.233585	5.06343	0.0721345	0.00101725	0.187433	0.0293497
chr16	22470363	22470458	6322280	0	+	0.484211	(0.476,0.515]	chr16	605350	8	INTRON	INTRON	SMG1P1	ENSG00000237296.10	ENST00000381231.5:ENST00000309865.11:ENST00000691423.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	5	103	2	2.54395	3.233505	3.92306	8.361e-4	1.72405e-4	0.0263691	0.0120625
chr19	11011224	11011320	7016083	0	+	0.520833	(0.515,0.57]	chr19	697264	3	INTRON	INTRON	SMARCA4	ENSG00000127616.20	ENST00000644737.1:ENST00000642726.1:ENST00000646484.1:ENST00000643549.1:ENST00000643296.1:ENST00000647230.1:ENST00000642628.1:ENST00000646510.1:ENST00000429416.8:ENST00000344626.10:ENST00000646693.2:ENST00000645460.1:ENST00000541122.6:ENST00000589677.5:ENST00000444061.8:ENST00000590574.6:ENST00000591545.6:ENST00000643995.1:ENST00000644327.1:ENST00000644065.1:ENST00000644963.1:ENST00000643208.1:ENST00000645061.1:ENST00000642350.1:ENST00000644290.1:ENST00000647268.1:ENST00000643857.1:ENST00000644267.1:ENST00000646183.1:ENST00000646746.1:ENST00000643534.1:ENST00000646513.1:ENST00000646593.1:ENST00000645648.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	33	2	1.8707	3.2335000000000003	4.5963	0.0523213	0.00370287	0.160182	0.0561162
chr21	44960568	44960668	7417667	0	+	0.55	(0.515,0.57]	chr21	756230	4	SS5_PROX	SS5_PROX:INTRON	SLX9	ENSG00000160256.13	ENST00000397826.7:ENST00000458015.1:ENST00000291634.11:ENST00000479127.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	33	2	1.8707	3.2335000000000003	4.5963	0.0523213	0.00370287	0.160182	0.0561162
chr5	119309387	119309487	2462004	0	+	0.54	(0.515,0.57]	chr5	235842	401	INTRON	INTRON	TNFAIP8	ENSG00000145779.8	ENST00000274456.6:ENST00000388882.5	protein_coding	protein_coding	protein_coding	protein_coding	2	33	2	1.8707	3.2335000000000003	4.5963	0.0523213	0.00370287	0.160182	0.0561162
chrX	129912121	129912221	7722044	0	+	0.54	(0.515,0.57]	chrX	789860	2	SS5_PROX	SS5_PROX:INTRON	UTP14A	ENSG00000156697.13	ENST00000425117.6:ENST00000394422.8	protein_coding	protein_coding	protein_coding	protein_coding	2	33	2	1.8707	3.2335000000000003	4.5963	0.0523213	0.00370287	0.160182	0.0561162
chr10	77791275	77791372	4653392	0	-	0.43299	(0.408,0.44]	chr10	428590	6	UTR3	UTR3:EXON_MRNA	DLG5	ENSG00000151208.17	ENST00000372391.7:ENST00000475613.6:ENST00000424842.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	140	2	2.8501	3.233465	3.61683	1.55358e-4	5.47818e-5	0.0106835	0.00651589
chr11	2959983	2960057	4891663	0	-	0.405405	(0.378,0.408]	chr11	458307	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	NAP1L4	ENSG00000205531.13	ENST00000620138.4:ENST00000380542.9:ENST00000526115.5:ENST00000492685.5:ENST00000528363.5:ENST00000483643.7:ENST00000532325.6:ENST00000448187.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	152	2	3.07019	3.23335	3.39651	2.29676e-4	1.95261e-5	0.0139078	0.00339939
chr1	87011407	87011507	154563	0	+	0.43	(0.408,0.44]	chr1	16969	360	INTRON	INTRON	HS2ST1	ENSG00000153936.18	ENST00000370550.10:ENST00000370551.8:ENST00000687893.1:ENST00000693745.1:ENST00000689904.1:ENST00000690674.1:ENST00000591456.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	28	2	2.36073	3.2333350000000003	4.10594	0.0481658	0.0219367	0.153019	0.123836
chr19	52636130	52636226	7206582	0	-	0.427083	(0.408,0.44]	chr19	731388	12	UTR5	UTR5:EXON_MRNA:INTRON	ZNF83	ENSG00000167766.20	ENST00000600714.5:ENST00000601257.5:ENST00000301096.8:ENST00000536937.6:ENST00000597597.1:ENST00000594682.6:ENST00000545872.1:ENST00000597161.6:ENST00000687234.1:ENST00000595939.5:ENST00000596930.5:ENST00000598536.5:ENST00000601140.1:ENST00000595171.5:ENST00000601237.5:ENST00000596440.5:ENST00000602232.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	28	2	2.36073	3.2333350000000003	4.10594	0.0481658	0.0219367	0.153019	0.123836
chr21	32376260	32376353	7438645	0	-	0.419355	(0.408,0.44]	chr21	758923	4	INTRON	INTRON	URB1	ENSG00000142207.7	ENST00000382751.4	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	2.36073	3.2333350000000003	4.10594	0.0481658	0.0219367	0.153019	0.123836
chr3	170155388	170155487	1861566	0	-	0.434343	(0.408,0.44]	chr3	186655	43	INTRON	INTRON	PHC3	ENSG00000173889.16	ENST00000495893.7:ENST00000494943.5:ENST00000467570.5:ENST00000484931.5:ENST00000479467.5:ENST00000466189.5:ENST00000475729.5:ENST00000474275.5:ENST00000472330.5:ENST00000465896.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	28	2	2.36073	3.2333350000000003	4.10594	0.0481658	0.0219367	0.153019	0.123836
chrX	54553496	54553590	7664845	0	+	0.43617	(0.408,0.44]	chrX	784781	7	INTRON	INTRON	GNL3L	ENSG00000130119.17	ENST00000674498.1:ENST00000674229.1:ENST00000674225.1:ENST00000674178.1:ENST00000336470.8:ENST00000360845.3:ENST00000674238.1:ENST00000674420.1:ENST00000674311.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	28	2	2.36073	3.2333350000000003	4.10594	0.0481658	0.0219367	0.153019	0.123836
chrX	66234910	66235010	7673413	0	+	0.43	(0.408,0.44]	chrX	785355	263	INTRON	INTRON	HEPH	ENSG00000089472.18	ENST00000519389.6:ENST00000683049.1:ENST00000458621.6:ENST00000684042.1:ENST00000343002.7:ENST00000336279.9:ENST00000441993.7:ENST00000419594.6:ENST00000682362.1:ENST00000425114.2:ENST00000682927.1:ENST00000683420.1:ENST00000684071.1:ENST00000684625.1:ENST00000684603.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	28	2	2.36073	3.2333350000000003	4.10594	0.0481658	0.0219367	0.153019	0.123836
chrX	136866299	136866399	7897535	0	-	0.28	[0,0.28]	chrX	804139	174	INTRON	INTRON	RBMX	ENSG00000147274.14	ENST00000561733.5	protein_coding	processed_transcript	protein_coding	processed_transcript	1	37	2	2.38757	3.23329	4.07901	0.0552962	0.0494049	0.174117	0.165463
chr10	30349175	30349275	4587648	0	-	0.61	(0.57,1]	chr10	422997	1	CDS_START	CDS_START:CDS:EXON_MRNA:INTRON	MTPAP	ENSG00000107951.15	ENST00000263063.9:ENST00000488290.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	69	2	3.01672	3.233205	3.44969	5.94133e-4	5.72554e-6	0.0221865	0.00177762
chr22	20104478	20104578	7478481	0	+	0.58	(0.57,1]	chr22	762741	93	INTRON	INTRON	DGCR8	ENSG00000128191.16	ENST00000383024.6:ENST00000351989.8:ENST00000495826.5:ENST00000407755.1:ENST00000498171.5:ENST00000491892.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	69	2	3.01672	3.233205	3.44969	5.94133e-4	5.72554e-6	0.0221865	0.00177762
chr3	197078069	197078167	1901275	0	-	0.438776	(0.408,0.44]	chr3	190528	10	INTRON	INTRON	DLG1	ENSG00000075711.21	ENST00000667157.1:ENST00000346964.6:ENST00000656428.1:ENST00000663148.1:ENST00000655488.1:ENST00000357674.9:ENST00000671185.1:ENST00000658701.1:ENST00000667104.1:ENST00000661336.1:ENST00000669565.1:ENST00000670455.1:ENST00000656087.1:ENST00000670366.1:ENST00000653583.1:ENST00000653795.1:ENST00000671246.1:ENST00000661453.1:ENST00000665728.1:ENST00000664564.1:ENST00000653331.1:ENST00000660432.1:ENST00000660898.1:ENST00000657381.1:ENST00000659221.1:ENST00000654737.1:ENST00000669332.1:ENST00000659716.1:ENST00000660553.1:ENST00000664991.1:ENST00000419354.5:ENST00000661440.1:ENST00000667971.1:ENST00000670935.1:ENST00000668578.1:ENST00000666007.1:ENST00000661229.1:ENST00000660237.1:ENST00000657098.1:ENST00000661013.1:ENST00000436682.6:ENST00000452595.5:ENST00000662727.1:ENST00000422288.6:ENST00000448528.6:ENST00000443183.5:ENST00000656944.1:ENST00000392382.6:ENST00000450955.5:ENST00000658155.1:ENST00000669714.1:ENST00000654733.1:ENST00000469073.2:ENST00000419227.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	184	2	2.31964	3.2331950000000003	4.14675	7.98147e-4	9.37077e-7	0.0261178	5.51418e-4
chr1	31292576	31292647	413249	0	-	0.338028	(0.32,0.35]	chr1	49809	2	INTRON	INTRON	SNRNP40	ENSG00000060688.13	ENST00000263694.9	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	2.40308	3.233035	4.06299	0.0559439	0.0417732	0.165463	0.161736
chr10	91839271	91839370	4488446	0	+	0.343434	(0.32,0.35]	chr10	413205	19	INTRON	INTRON	TNKS2	ENSG00000107854.6	ENST00000371627.5	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	2.40308	3.233035	4.06299	0.0559439	0.0417732	0.165463	0.161736
chr15	40189851	40189951	6001541	0	+	0.35	(0.32,0.35]	chr15	570623	24	INTRON	INTRON	BUB1B	ENSG00000156970.13	ENST00000412359.7:ENST00000287598.11:ENST00000559733.5:ENST00000557848.1:ENST00000559772.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	28	2	2.40308	3.233035	4.06299	0.0559439	0.0417732	0.165463	0.161736
chr15	95781005	95781099	6109784	0	+	0.340426	(0.32,0.35]	chr15	581799	14	INTRON	INTRON	ENSG00000275016	ENSG00000275016.5	ENST00000612595.2:ENST00000666682.1:ENST00000667774.1:ENST00000616588.4:ENST00000656202.1:ENST00000666386.1	lncRNA	lncRNA	lncRNA	lncRNA	1	28	2	2.40308	3.233035	4.06299	0.0559439	0.0417732	0.165463	0.161736
chr4	159253286	159253386	2075011	0	+	0.34	(0.32,0.35]	chr4	205218	91	INTRON	INTRON	RAPGEF2	ENSG00000109756.10	ENST00000644474.1:ENST00000691494.1:ENST00000505478.5:ENST00000504604.5:ENST00000644902.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	28	2	2.40308	3.233035	4.06299	0.0559439	0.0417732	0.165463	0.161736
chr8	26326324	26326424	3716445	0	+	0.34	(0.32,0.35]	chr8	345376	5	INTRON	INTRON	PPP2R2A	ENSG00000221914.11	ENST00000380737.8:ENST00000520329.5:ENST00000518254.5:ENST00000524169.5:ENST00000518397.5:ENST00000522535.5:ENST00000665949.1:ENST00000522150.5:ENST00000523473.5:ENST00000521095.5:ENST00000660435.1:ENST00000523925.5:ENST00000524099.5:ENST00000315985.7:ENST00000519636.5:ENST00000522482.5:ENST00000521557.5:ENST00000519439.5:ENST00000521484.5:ENST00000523964.5:ENST00000667651.1:ENST00000657943.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	28	2	2.40308	3.233035	4.06299	0.0559439	0.0417732	0.165463	0.161736
chr8	53971161	53971261	3952780	0	-	0.35	(0.32,0.35]	chr8	362510	3	INTRON	INTRON	TCEA1	ENSG00000187735.15	ENST00000396401.7:ENST00000521604.7:ENST00000521086.6:ENST00000522635.5:ENST00000522397.5:ENST00000640382.1:ENST00000640041.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	28	2	2.40308	3.233035	4.06299	0.0559439	0.0417732	0.165463	0.161736
chrX	123625990	123626069	7877957	0	-	0.329114	(0.32,0.35]	chrX	802458	2	CDS	CDS:EXON_MRNA	THOC2	ENSG00000125676.20	ENST00000245838.13:ENST00000355725.8:ENST00000491737.5:ENST00000438358.1	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	2.40308	3.233035	4.06299	0.0559439	0.0417732	0.165463	0.161736
chr1	10512246	10512345	23350	0	+	0.444444	(0.44,0.476]	chr1	2503	166	INTRON	INTRON	PEX14	ENSG00000142655.13	ENST00000472851.1:ENST00000356607.9:ENST00000491661.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	76	2	2.78129	3.23301	3.68473	0.00229634	5.47507e-4	0.0439319	0.0215463
chr5	69169902	69169998	2380006	0	+	0.447917	(0.44,0.476]	chr5	229157	12	INTRON	INTRON	CCNB1	ENSG00000134057.15	ENST00000506572.5:ENST00000256442.10:ENST00000508407.5:ENST00000505500.5:ENST00000503507.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	76	2	2.78129	3.23301	3.68473	0.00229634	5.47507e-4	0.0439319	0.0215463
chr5	159197893	159197992	2759071	0	-	0.444444	(0.44,0.476]	chr5	260362	27	INTRON	INTRON	RNF145	ENSG00000145860.12	ENST00000424310.7:ENST00000519865.5:ENST00000274542.6:ENST00000611185.4:ENST00000521606.6:ENST00000518802.5:ENST00000520638.1:ENST00000520548.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	106	2	2.84842	3.2328	3.61718	7.37432e-4	1.57183e-4	0.02495	0.0107517
chr1	219192182	219192282	318561	0	+	0.35	(0.32,0.35]	chr1	36451	124	INTRON	INTRON	LYPLAL1	ENSG00000143353.12	ENST00000460522.5:ENST00000366927.3:ENST00000496776.5:ENST00000366928.10:ENST00000477938.5:ENST00000463964.5:ENST00000483635.5:ENST00000474379.5:ENST00000469590.5:ENST00000478794.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	142	2	3.13351	3.232775	3.33204	3.45657e-4	1.20676e-4	0.0173197	0.00938389
chr6	35413694	35413793	2852692	0	+	0.565657	(0.515,0.57]	chr6	269505	21	INTRON	INTRON	PPARD	ENSG00000112033.14	ENST00000418635.6:ENST00000448077.6:ENST00000360694.8:ENST00000311565.4:ENST00000337400.6	protein_coding	protein_coding	protein_coding	protein_coding	4	88	2	3.12673	3.23256	3.33839	3.95089e-4	1.61956e-4	0.0178567	0.0116382
chr1	31930038	31930136	414352	0	-	0.602041	(0.57,1]	chr1	49923	1	UTR5	UTR5:EXON_MRNA:INTRON	PTP4A2	ENSG00000184007.22	ENST00000647444.2:ENST00000649841.1:ENST00000468531.1:ENST00000534796.5:ENST00000532289.1:ENST00000526960.1:ENST00000524384.5:ENST00000528840.1:ENST00000494444.2:ENST00000529477.5:ENST00000533408.1:ENST00000475464.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	42	2	3.19707	3.232335	3.2676	0.00176203	2.16062e-4	0.0376652	0.0129138
chr12	132098404	132098504	5250328	0	+	0.41	(0.408,0.44]	chr12	499298	65	INTRON	INTRON	EP400P1	ENSG00000185684.16	ENST00000407361.8:ENST00000446190.5:ENST00000690966.1:ENST00000689047.1:ENST00000454179.7:ENST00000689533.1:ENST00000688036.1:ENST00000688136.1:ENST00000488030.5:ENST00000389560.6:ENST00000689403.1:ENST00000443539.6:ENST00000392352.5:ENST00000539205.5:ENST00000332441.7	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	5	104	2	2.50424	3.232215	3.96019	0.00101099	1.56132e-4	0.0293364	0.0113571
chr1	21754104	21754201	396574	0	-	0.43299	(0.408,0.44]	chr1	47332	6	INTRON	INTRON	USP48	ENSG00000090686.16	ENST00000400301.5:ENST00000308271.14:ENST00000529637.5:ENST00000421625.6:ENST00000527823.5:ENST00000532737.1	protein_coding	protein_coding	protein_coding	protein_coding	20	410	2	2.91571	3.2320849999999997	3.54846	1.65672e-6	8.92799e-7	8.58048e-4	5.37278e-4
chr1	100977857	100977957	175165	0	+	0.5	(0.476,0.515]	chr1	18985	31	UTR3	UTR3:EXON_MRNA	SLC30A7	ENSG00000162695.12	ENST00000370112.8:ENST00000357650.9	protein_coding	protein_coding	protein_coding	protein_coding	3	77	2	2.9698	3.231955	3.49411	0.00124841	9.23453e-4	0.0323336	0.0278392
chr16	30250130	30250230	6472610	0	-	0.6	(0.57,1]	chr16	625566	39	INTRON	INTRON	NPIPB13	ENSG00000198064.14	ENST00000568053.5	protein_coding	protein_coding	protein_coding	protein_coding	6	63	2	2.40924	3.2318800000000003	4.05452	6.26777e-4	2.28989e-5	0.0230192	0.00373083
chr10	69140335	69140435	4444712	0	+	0.51	(0.476,0.515]	chr10	410023	69	INTRON	INTRON	VPS26A	ENSG00000122958.15	ENST00000373382.5:ENST00000395098.5:ENST00000489656.5:ENST00000263559.11:ENST00000497564.5:ENST00000490696.5:ENST00000467852.1:ENST00000489794.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	90	2	2.72228	3.23186	3.74144	8.52725e-4	4.08784e-4	0.0264928	0.0185763
chr11	748775	748874	4720346	0	+	0.484848	(0.476,0.515]	chr11	436387	8	INTRON	INTRON	TALDO1	ENSG00000177156.11	ENST00000528070.5:ENST00000532685.1:ENST00000528097.5:ENST00000530440.1:ENST00000319006.8:ENST00000530119.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	90	2	2.72228	3.23186	3.74144	8.52725e-4	4.08784e-4	0.0264928	0.0185763
chr1	11804254	11804346	378932	0	-	0.48913	(0.476,0.515]	chr1	44489	9	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	MTHFR	ENSG00000177000.13	ENST00000376590.9:ENST00000376592.6:ENST00000376585.6:ENST00000641747.1:ENST00000641446.1:ENST00000376486.3:ENST00000641437.1:ENST00000418034.1:ENST00000431243.6:ENST00000642002.1:ENST00000413656.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	122	2	3.0219	3.231465	3.44103	2.50304e-4	8.64735e-5	0.0146237	0.00783027
chr12	54325782	54325882	5143703	0	+	0.45	(0.44,0.476]	chr12	485587	1	SS5_PROX	SS5_PROX:INTRON	COPZ1	ENSG00000111481.10	ENST00000552848.5:ENST00000548076.5:ENST00000553009.5:ENST00000549043.5:ENST00000262061.7:ENST00000552218.5:ENST00000551962.5:ENST00000550171.5:ENST00000455864.6:ENST00000552362.5:ENST00000553231.5:ENST00000550027.5:ENST00000551412.5:ENST00000549116.5:ENST00000551779.5:ENST00000548281.5:ENST00000548753.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	76	2	2.59632	3.2314600000000002	3.8666	0.00579248	1.50865e-4	0.0662959	0.0106137
chr2	130132372	130132471	863596	0	+	0.353535	(0.35,0.378]	chr2	96903	22	INTRON	INTRON	MED15P9	ENSG00000223760.4	ENST00000427638.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	4	99	2	2.56634	3.231435	3.89653	0.00190773	2.61932e-4	0.0403772	0.0149313
chrX	154768131	154768216	7739341	0	+	0.435294	(0.408,0.44]	chrX	792407	4	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	DKC1	ENSG00000130826.19	ENST00000620277.4:ENST00000413910.6:ENST00000426673.6:ENST00000696575.1:ENST00000369550.10:ENST00000696579.1:ENST00000696578.1:ENST00000696577.1:ENST00000696576.1:ENST00000696580.1:ENST00000696581.1:ENST00000696582.1:ENST00000696583.1:ENST00000696627.1:ENST00000696628.1:ENST00000696584.1:ENST00000696585.1:ENST00000696586.1:ENST00000696587.1:ENST00000696588.1:ENST00000437719.5:ENST00000412124.5:ENST00000484317.6:ENST00000696589.1:ENST00000696590.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	102	2	3.14831	3.23133	3.31435	5.86664e-4	1.71418e-4	0.022457	0.0113605
chr6	52375423	52375522	2875600	0	+	0.343434	(0.32,0.35]	chr6	272903	14	INTRON	INTRON	PAQR8:EFHC1	ENSG00000170915.9:ENSG00000096093.16	ENST00000512121.1:ENST00000635984.1:ENST00000637849.1:ENST00000635760.1:ENST00000442253.3:ENST00000491749.2:ENST00000360726.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	34	2	2.68921	3.231325	3.77344	0.0596635	0.0230336	0.189982	0.118056
chr19	2203573	2203672	6996576	0	+	0.575758	(0.57,1]	chr19	693473	4	INTRON	INTRON	DOT1L	ENSG00000104885.19	ENST00000398665.8:ENST00000686010.1	protein_coding	protein_coding	protein_coding	protein_coding	6	73	2	2.85824	3.231315	3.60439	9.03658e-5	1.64192e-5	0.00795396	0.00324999
chr7	75072913	75073013	3557242	0	-	0.37	(0.35,0.378]	chr7	331261	1	SS5_PROX	SS5_PROX:INTRON	RCC1L	ENSG00000274523.5	ENST00000614461.4:ENST00000610322.5:ENST00000616051.1:ENST00000618035.4:ENST00000615250.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	51	2	1.87726	3.231315	4.58537	0.0297629	0.00703328	0.12908	0.0754576
chr18	725723	725822	6939825	0	-	0.525253	(0.515,0.57]	chr18	686455	7	INTRON	INTRON	YES1	ENSG00000176105.14	ENST00000584307.5:ENST00000314574.5:ENST00000577961.5	protein_coding	protein_coding	protein_coding	protein_coding	3	41	2	1.8661	3.2312000000000003	4.5963	0.0274846	0.00370287	0.123904	0.0561162
chrX	73983843	73983943	7682497	0	+	0.26	[0,0.28]	chrX	786638	155	INTRON	INTRON	JPX	ENSG00000225470.8	ENST00000664637.1:ENST00000639185.1:ENST00000655090.1:ENST00000640437.1:ENST00000660546.1:ENST00000667886.1:ENST00000660840.1:ENST00000657179.1:ENST00000670506.1:ENST00000657910.1:ENST00000662120.1:ENST00000671207.1:ENST00000659254.1:ENST00000656624.1:ENST00000667573.1:ENST00000660856.1:ENST00000660836.1:ENST00000668590.1:ENST00000658649.1:ENST00000414209.6:ENST00000654137.1:ENST00000670994.1:ENST00000602772.5:ENST00000655879.1:ENST00000657372.1:ENST00000657096.1:ENST00000602985.6:ENST00000670685.1:ENST00000670503.1:ENST00000663027.1:ENST00000654995.1:ENST00000602895.6:ENST00000654374.1:ENST00000660087.1:ENST00000665032.1:ENST00000671336.1:ENST00000671476.1:ENST00000667057.1:ENST00000670192.1:ENST00000670464.1:ENST00000665345.1:ENST00000661546.1:ENST00000662543.1:ENST00000602938.6:ENST00000664295.1:ENST00000654005.1:ENST00000669149.1:ENST00000659852.1:ENST00000656509.1:ENST00000602294.6:ENST00000667294.1:ENST00000663470.1:ENST00000602920.6:ENST00000671021.1:ENST00000659849.1:ENST00000667937.1:ENST00000661130.1:ENST00000654196.1:ENST00000655994.1:ENST00000659373.1:ENST00000662239.1:ENST00000670805.1:ENST00000656263.1:ENST00000653069.1:ENST00000657638.1:ENST00000653808.1:ENST00000653929.1:ENST00000653885.1:ENST00000659023.1:ENST00000602546.5:ENST00000659622.1:ENST00000671518.1:ENST00000670408.1	lncRNA	lncRNA	lncRNA	lncRNA	2	43	2	1.84147	3.2311550000000002	4.62084	0.0610416	0.0313633	0.193277	0.13151
chr16	88644659	88644759	6539118	0	-	0.53	(0.515,0.57]	chr16	633664	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS3_PROX:INTRON	CYBA	ENSG00000051523.12	ENST00000696156.1:ENST00000696159.1:ENST00000696160.1:ENST00000696157.1:ENST00000696158.1:ENST00000261623.8:ENST00000696163.1:ENST00000696162.1:ENST00000696161.1:ENST00000565588.6:ENST00000566534.5:ENST00000566229.1:ENST00000567174.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	50	2	3.05839	3.231135	3.40388	0.00485936	0.00142538	0.0640618	0.0340865
chr16	22464504	22464602	6322217	0	+	0.418367	(0.408,0.44]	chr16	605333	18	INTRON	INTRON	SMG1P1	ENSG00000237296.10	ENST00000381231.5:ENST00000309865.11:ENST00000691795.1:ENST00000308347.10:ENST00000687936.1:ENST00000691423.1:ENST00000337787.3	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	3	76	2	3.09037	3.230995	3.37162	0.00208674	5.47766e-4	0.0411801	0.0212924
chr10	119590501	119590598	4705968	0	-	0.494845	(0.476,0.515]	chr10	434236	19	INTRON	INTRON	TIAL1	ENSG00000151923.18	ENST00000369093.6:ENST00000436547.7:ENST00000489822.5:ENST00000497671.5:ENST00000470781.5:ENST00000462373.1:ENST00000479729.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	29	2	2.63168	3.23093	3.83018	0.0423385	0.0237106	0.161744	0.118716
chr16	55583791	55583890	6359523	0	+	0.484848	(0.476,0.515]	chr16	610332	8	UTR3	UTR3:EXON_MRNA	LPCAT2	ENSG00000087253.13	ENST00000262134.10:ENST00000566915.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	29	2	2.63168	3.23093	3.83018	0.0423385	0.0237106	0.161744	0.118716
chr5	139294529	139294622	2499387	0	+	0.505376	(0.476,0.515]	chr5	238908	1	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	MATR3	ENSG00000280987.4:ENSG00000015479.20	ENST00000509990.5:ENST00000506147.5:ENST00000512107.5:ENST00000361059.7:ENST00000394800.6:ENST00000502929.5:ENST00000504203.5:ENST00000514694.5:ENST00000509644.5:ENST00000505016.2:ENST00000502394.1:ENST00000512876.5:ENST00000513678.5:ENST00000513121.1:ENST00000504045.5:ENST00000504311.5:ENST00000502499.5:ENST00000510056.5:ENST00000511249.5:ENST00000394805.8:ENST00000507860.1:ENST00000509918.5:ENST00000503811.5:ENST00000511978.5:ENST00000618441.5:ENST00000508689.1:ENST00000514528.5:ENST00000504643.5:ENST00000514488.1:ENST00000503340.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	29	2	2.63168	3.23093	3.83018	0.0423385	0.0237106	0.161744	0.118716
chr1	167976014	167976113	248886	0	+	0.313131	(0.28,0.32]	chr1	29564	6	INTRON	INTRON	DCAF6	ENSG00000143164.16	ENST00000450548.5:ENST00000470919.5:ENST00000432587.6:ENST00000367843.7:ENST00000470721.5:ENST00000367840.4:ENST00000312263.10:ENST00000455334.5:ENST00000491067.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	55	2	1.47299	3.230855	4.98872	0.0597769	0.00838468	0.189982	0.0774402
chr1	47290382	47290481	445866	0	-	0.59596	(0.57,1]	chr1	54033	4	INTRON	INTRON	STIL	ENSG00000123473.17	ENST00000360380.7:ENST00000371877.8:ENST00000337817.10:ENST00000683977.1:ENST00000682977.1:ENST00000396221.6:ENST00000447475.7:ENST00000436811.2:ENST00000682165.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	54	2	3.20917	3.230835	3.2525	2.02775e-4	1.55446e-4	0.0129814	0.0106835
chr8	100307897	100307997	4004406	0	-	0.32	(0.28,0.32]	chr8	366481	41	INTRON	INTRON	RNF19A	ENSG00000034677.13	ENST00000341084.7:ENST00000519527.5:ENST00000523167.1:ENST00000522369.5:ENST00000523481.5:ENST00000522182.1:ENST00000519342.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	95	2	3.06094	3.2306749999999997	3.40041	0.00273088	8.54457e-4	0.0467642	0.0265194
chr1	27429333	27429433	406156	0	-	0.36	(0.35,0.378]	chr1	48985	4	SS3_PROX	SS3_PROX:INTRON	WASF2	ENSG00000158195.11	ENST00000618852.5:ENST00000536657.1	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	2.1617	3.2306550000000005	4.29961	0.0771502	0.0158483	0.196285	0.109464
chr13	28144184	28144284	5460885	0	+	0.37	(0.35,0.378]	chr13	523235	47	INTRON	INTRON	PAN3	ENSG00000152520.14	ENST00000503791.5:ENST00000380958.8:ENST00000399613.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	29	2	2.1617	3.2306550000000005	4.29961	0.0771502	0.0158483	0.196285	0.109464
chr13	99338023	99338122	5525822	0	+	0.353535	(0.35,0.378]	chr13	528270	196	INTRON	INTRON	UBAC2	ENSG00000134882.16	ENST00000355700.9:ENST00000403766.8:ENST00000468067.5:ENST00000376440.6:ENST00000494576.5:ENST00000473194.5:ENST00000460562.5:ENST00000480738.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	29	2	2.1617	3.2306550000000005	4.29961	0.0771502	0.0158483	0.196285	0.109464
chr4	87036379	87036479	1994812	0	+	0.36	(0.35,0.378]	chr4	199041	286	INTRON	INTRON	AFF1	ENSG00000172493.23	ENST00000504956.5:ENST00000395146.9:ENST00000507468.5:ENST00000674009.1:ENST00000503477.5:ENST00000511442.1:ENST00000544085.6:ENST00000307808.10:ENST00000511722.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	29	2	2.1617	3.2306550000000005	4.29961	0.0771502	0.0158483	0.196285	0.109464
chr5	134820193	134820292	2491018	0	+	0.353535	(0.35,0.378]	chr5	237998	8	INTRON	INTRON	DDX46	ENSG00000145833.16	ENST00000452510.7:ENST00000507392.5:ENST00000354283.8:ENST00000503946.1:ENST00000507053.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	29	2	2.1617	3.2306550000000005	4.29961	0.0771502	0.0158483	0.196285	0.109464
chr6	161089971	161090061	3025490	0	+	0.366667	(0.35,0.378]	chr6	282379	1	INTRON	INTRON	MAP3K4	ENSG00000085511.20	ENST00000366919.6:ENST00000392142.9:ENST00000366920.6:ENST00000348824.11:ENST00000544041.5:ENST00000490904.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	29	2	2.1617	3.2306550000000005	4.29961	0.0771502	0.0158483	0.196285	0.109464
chr7	64918792	64918891	3321246	0	+	0.373737	(0.35,0.378]	chr7	308796	1	INTRON	INTRON	ZNF273	ENSG00000198039.12	ENST00000527278.5:ENST00000489672.5:ENST00000476120.2:ENST00000395375.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	29	2	2.1617	3.2306550000000005	4.29961	0.0771502	0.0158483	0.196285	0.109464
chr8	90279588	90279688	3792889	0	+	0.36	(0.35,0.378]	chr8	351786	324	INTRON	INTRON	LINC00534	ENSG00000253394.7	ENST00000662145.1:ENST00000655523.1:ENST00000517400.6:ENST00000658299.1:ENST00000663329.1:ENST00000658342.1:ENST00000523283.6:ENST00000655219.1:ENST00000662692.1:ENST00000667296.1:ENST00000667565.1:ENST00000523406.2:ENST00000659030.1:ENST00000653734.1:ENST00000654785.1:ENST00000524361.5:ENST00000668745.1:ENST00000666641.2:ENST00000661519.1:ENST00000671657.1:ENST00000655123.1:ENST00000663098.1:ENST00000670903.1:ENST00000654946.1	lncRNA	lncRNA	lncRNA	lncRNA	1	29	2	2.1617	3.2306550000000005	4.29961	0.0771502	0.0158483	0.196285	0.109464
chrX	48926846	48926945	7815761	0	-	0.363636	(0.35,0.378]	chrX	796844	4	INTRON	INTRON	OTUD5	ENSG00000068308.15	ENST00000376488.8:ENST00000396743.7:ENST00000455452.5:ENST00000156084.8:ENST00000428668.2:ENST00000484499.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	29	2	2.1617	3.2306550000000005	4.29961	0.0771502	0.0158483	0.196285	0.109464
chr3	141912354	141912453	1526436	0	+	0.474747	(0.44,0.476]	chr3	159025	47	INTRON	INTRON	ATP1B3	ENSG00000069849.11	ENST00000475483.5:ENST00000465172.5:ENST00000286371.8:ENST00000466678.5:ENST00000462082.1:ENST00000495216.1:ENST00000482635.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	41	2	1.62896	3.23049	4.83202	0.0546679	0.00525002	0.182674	0.0633615
chr21	39262662	39262762	7465017	0	-	0.41	(0.408,0.44]	chr21	760495	36	INTRON	INTRON	BRWD1	ENSG00000185658.14	ENST00000333229.6:ENST00000342449.8:ENST00000446924.5:ENST00000380800.7:ENST00000430093.5:ENST00000445245.5:ENST00000445668.5:ENST00000412604.1:ENST00000455867.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	91	2	2.64127	3.230275	3.81928	0.00125199	3.06208e-4	0.0328543	0.0161362
chr1	55115221	55115321	464851	0	-	0.58	(0.57,1]	chr1	56085	46	INTRON	INTRON	USP24	ENSG00000162402.14	ENST00000294383.7	protein_coding	protein_coding	protein_coding	protein_coding	6	73	2	2.8182	3.23025	3.6423	1.17872e-4	1.26117e-5	0.00930884	0.00281675
chr5	119133688	119133786	2460402	0	+	0.367347	(0.35,0.378]	chr5	235650	3	CDS	CDS:EXON_MRNA	DMXL1	ENSG00000172869.15	ENST00000539542.6:ENST00000503802.5:ENST00000311085.8	protein_coding	protein_coding	protein_coding	protein_coding	5	133	2	3.17264	3.2302150000000003	3.28779	6.16722e-4	4.28708e-5	0.0229036	0.00530415
chr1	149884647	149884742	549576	0	-	0.4	(0.378,0.408]	chr1	64526	3	UTR3	UTR3:EXON_MRNA	H2BC21	ENSG00000184678.11	ENST00000369155.4	protein_coding	protein_coding	protein_coding	protein_coding	7	177	2	2.56838	3.230085	3.89179	0.0010901	6.77688e-7	0.0303873	4.55248e-4
chr16	100909	101009	6425380	0	-	0.42	(0.408,0.44]	chr16	617340	4	SS3_PROX	SS3_PROX:INTRON	NPRL3	ENSG00000103148.17	ENST00000611875.5:ENST00000622194.4:ENST00000621703.4:ENST00000399953.7:ENST00000473674.5:ENST00000457916.5:ENST00000483663.5:ENST00000422814.5:ENST00000468260.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	58	2	2.78122	3.23004	3.67886	0.015812	3.86173e-4	0.101453	0.017761
chr8	25491785	25491885	3715910	0	+	0.43	(0.408,0.44]	chr8	345325	27	INTRON	INTRON	CDCA2	ENSG00000184661.14	ENST00000380665.3:ENST00000330560.8:ENST00000521098.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	57	2	3.20034	3.2299100000000003	3.25948	0.00398025	0.00246454	0.0549214	0.0459102
chr2	55687344	55687444	1125705	0	-	0.53	(0.515,0.57]	chr2	120835	3	SS5_PROX	SS5_PROX:INTRON	PNPT1	ENSG00000138035.15	ENST00000447944.7:ENST00000415374.5:ENST00000260604.8:ENST00000429805.1:ENST00000625249.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	107	2	3.18731	3.22986	3.27241	1.80226e-4	7.269e-5	0.0116696	0.00767614
chr1	44754170	44754249	92459	0	+	0.531646	(0.515,0.57]	chr1	12283	4	SS5_PROX	SS5_PROX:INTRON	KIF2C	ENSG00000142945.13	ENST00000452259.5:ENST00000493027.5:ENST00000372224.9:ENST00000455186.5:ENST00000372217.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	31	2	1.94945	3.2297249999999997	4.51	0.0414068	0.00809449	0.161557	0.0766625
chr16	23684389	23684489	6323687	0	+	0.52	(0.515,0.57]	chr16	605658	3	SS5_PROX	SS5_PROX:INTRON	PLK1	ENSG00000166851.15	ENST00000562272.5:ENST00000300093.9:ENST00000562407.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	31	2	1.94945	3.2297249999999997	4.51	0.0414068	0.00809449	0.161557	0.0766625
chr19	48453324	48453424	7087537	0	+	0.54	(0.515,0.57]	chr19	709257	4	UTR3	UTR3:EXON_MRNA	GRWD1	ENSG00000105447.13	ENST00000253237.10	protein_coding	protein_coding	protein_coding	protein_coding	2	31	2	1.94945	3.2297249999999997	4.51	0.0414068	0.00809449	0.161557	0.0766625
chr2	3248507	3248607	1058427	0	-	0.56	(0.515,0.57]	chr2	112866	339	INTRON	INTRON	EIPR1	ENSG00000032389.13	ENST00000398659.8:ENST00000478754.5:ENST00000382125.9:ENST00000455162.5:ENST00000441271.1:ENST00000463662.5:ENST00000435721.5:ENST00000482570.5:ENST00000443925.6:ENST00000406835.6:ENST00000462515.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	31	2	1.94945	3.2297249999999997	4.51	0.0414068	0.00809449	0.161557	0.0766625
chr5	119187811	119187911	2460964	0	+	0.52	(0.515,0.57]	chr5	235744	92	INTRON	INTRON	DMXL1	ENSG00000172869.15	ENST00000539542.6:ENST00000311085.8	protein_coding	protein_coding	protein_coding	protein_coding	2	31	2	1.94945	3.2297249999999997	4.51	0.0414068	0.00809449	0.161557	0.0766625
chr3	138807546	138807646	1831228	0	-	0.43	(0.408,0.44]	chr3	184062	106	INTRON	INTRON	PIK3CB	ENSG00000051382.9	ENST00000674063.1:ENST00000477593.5:ENST00000462898.5:ENST00000483968.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	92	2	2.36228	3.229715	4.09715	0.00528443	4.3007e-5	0.0635846	0.00530629
chr1	45838977	45839077	94167	0	+	0.54	(0.515,0.57]	chr1	12696	90	INTRON	INTRON	MAST2	ENSG00000086015.23	ENST00000470809.1:ENST00000361297.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	31	2	1.86007	3.2296050000000003	4.59914	0.0526611	0.00616166	0.178401	0.0676501
chr11	77752202	77752302	4995289	0	-	0.52	(0.515,0.57]	chr11	472041	47	INTRON	INTRON	RSF1	ENSG00000048649.14	ENST00000308488.11:ENST00000528095.5:ENST00000534794.1:ENST00000440064.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	31	2	1.86007	3.2296050000000003	4.59914	0.0526611	0.00616166	0.178401	0.0676501
chr16	67468793	67468893	6504114	0	-	0.52	(0.515,0.57]	chr16	629468	97	INTRON	INTRON	ATP6V0D1	ENSG00000159720.13	ENST00000290949.8:ENST00000565835.5:ENST00000540149.5:ENST00000561852.5:ENST00000563064.5:ENST00000564191.5:ENST00000564788.1:ENST00000561658.5:ENST00000568298.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	31	2	1.86007	3.2296050000000003	4.59914	0.0526611	0.00616166	0.178401	0.0676501
chr3	195266319	195266418	1894145	0	-	0.525253	(0.515,0.57]	chr3	189521	64	INTRON	INTRON	XXYLT1	ENSG00000173950.16	ENST00000310380.11:ENST00000455281.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	31	2	1.86007	3.2296050000000003	4.59914	0.0526611	0.00616166	0.178401	0.0676501
chr9	37235807	37235907	4118815	0	+	0.54	(0.515,0.57]	chr9	375389	489	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000461038.5:ENST00000488607.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	31	2	1.86007	3.2296050000000003	4.59914	0.0526611	0.00616166	0.178401	0.0676501
chr1	15880372	15880471	34991	0	+	0.242424	[0,0.28]	chr1	4272	33	INTRON	INTRON	SPEN	ENSG00000065526.12	ENST00000673875.1:ENST00000375759.8:ENST00000438066.1:ENST00000442985.1	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	2.27119	3.229545	4.1879	0.070351	0.0396579	0.184298	0.161534
chr7	75523108	75523208	3559101	0	-	0.35	(0.32,0.35]	chr7	331602	65	INTRON	INTRON	PMS2P3	ENSG00000127957.19	ENST00000693762.1:ENST00000394921.8:ENST00000430602.5:ENST00000418756.5:ENST00000437568.6:ENST00000533167.5:ENST00000691440.1:ENST00000422064.1:ENST00000438326.2	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript	4	118	2	2.99898	3.22942	3.45986	0.00148392	1.01088e-4	0.034977	0.00849135
chr10	87269084	87269184	4660647	0	-	0.39	(0.378,0.408]	chr10	429440	225	INTRON	INTRON	NUTM2A-AS1	ENSG00000223482.9	ENST00000692417.1:ENST00000688214.1:ENST00000659257.1:ENST00000671543.1:ENST00000451940.6:ENST00000687947.1:ENST00000663644.1:ENST00000684884.1:ENST00000664664.1:ENST00000446751.6:ENST00000456104.5:ENST00000433530.7:ENST00000688257.1:ENST00000433920.5:ENST00000687925.1:ENST00000666515.2:ENST00000688926.1:ENST00000447424.6:ENST00000690598.1:ENST00000663113.1:ENST00000667520.2:ENST00000693252.1:ENST00000687827.1:ENST00000687141.1	lncRNA	lncRNA	lncRNA	lncRNA	1	28	2	2.13703	3.229385	4.32174	0.0797592	0.0132362	0.19979	0.0999551
chr12	51004188	51004287	5324559	0	-	0.393939	(0.378,0.408]	chr12	507702	32	INTRON	INTRON	SLC11A2	ENSG00000110911.17	ENST00000547688.7:ENST00000644495.1:ENST00000643884.1:ENST00000546636.5:ENST00000547198.5:ENST00000394904.9:ENST00000262052.9:ENST00000643123.1:ENST00000646740.1:ENST00000642227.1:ENST00000541174.6:ENST00000545993.7:ENST00000546743.5:ENST00000547510.5:ENST00000546488.5:ENST00000547579.5:ENST00000550714.5:ENST00000547732.5:ENST00000549110.5:ENST00000548193.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	28	2	2.13703	3.229385	4.32174	0.0797592	0.0132362	0.19979	0.0999551
chr18	46841671	46841770	6965962	0	-	0.40404	(0.378,0.408]	chr18	689474	48	INTRON	INTRON	PIAS2	ENSG00000078043.16	ENST00000585916.6:ENST00000398654.7:ENST00000324794.11:ENST00000545673.5:ENST00000592212.5:ENST00000590127.5:ENST00000592011.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	28	2	2.13703	3.229385	4.32174	0.0797592	0.0132362	0.19979	0.0999551
chr19	10892676	10892776	7015179	0	+	0.39	(0.378,0.408]	chr19	697070	204	INTRON	INTRON	CARM1	ENSG00000142453.12	ENST00000327064.9:ENST00000588947.5:ENST00000590699.5:ENST00000344150.8:ENST00000586221.5:ENST00000590039.5:ENST00000589693.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	28	2	2.13703	3.229385	4.32174	0.0797592	0.0132362	0.19979	0.0999551
chr3	121537708	121537802	1798376	0	-	0.382979	(0.378,0.408]	chr3	180568	1	INTRON	INTRON	POLQ	ENSG00000051341.15	ENST00000264233.6:ENST00000683498.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	28	2	2.13703	3.229385	4.32174	0.0797592	0.0132362	0.19979	0.0999551
chr5	81976827	81976926	2402747	0	+	0.383838	(0.378,0.408]	chr5	232106	1	INTRON	INTRON	ATG10	ENSG00000152348.16	ENST00000282185.8:ENST00000355178.8:ENST00000510085.1:ENST00000458350.7:ENST00000513443.5:ENST00000504770.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	28	2	2.13703	3.229385	4.32174	0.0797592	0.0132362	0.19979	0.0999551
chr9	15480876	15480974	4235774	0	-	0.408163	(0.378,0.408]	chr9	389300	8	INTRON	INTRON	PSIP1	ENSG00000164985.15	ENST00000380738.8:ENST00000380733.9:ENST00000380716.8:ENST00000380715.5:ENST00000397519.6	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	2.13703	3.229385	4.32174	0.0797592	0.0132362	0.19979	0.0999551
chr20	63670981	63671078	7300004	0	+	0.474227	(0.44,0.476]	chr20	742889	31	INTRON	INTRON	RTEL1	ENSG00000258366.11	ENST00000370018.7:ENST00000684971.1:ENST00000692658.1:ENST00000360203.11:ENST00000508582.7:ENST00000686756.1:ENST00000318100.9:ENST00000482936.6:ENST00000356810.5:ENST00000692911.1:ENST00000687123.1:ENST00000463361.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	37	2	1.83899	3.229265	4.61954	0.0589734	0.00506805	0.167915	0.0646039
chr1	171502382	171502482	253383	0	+	0.44	(0.408,0.44]	chr1	30096	163	INTRON	INTRON	PRRC2C	ENSG00000117523.18	ENST00000647382.2:ENST00000367742.7:ENST00000476522.5:ENST00000338920.8:ENST00000467601.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	47	2	1.43792	3.2291	5.02028	0.062843	0.00303216	0.196433	0.0493883
chr16	84077154	84077253	6531792	0	-	0.424242	(0.408,0.44]	chr16	632870	11	INTRON	INTRON	MBTPS1	ENSG00000140943.18	ENST00000343411.8:ENST00000564643.1:ENST00000569770.5:ENST00000563231.5:ENST00000565863.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	47	2	1.43792	3.2291	5.02028	0.062843	0.00303216	0.196433	0.0493883
chr6	87596130	87596229	2915655	0	+	0.454545	(0.44,0.476]	chr6	275466	8	INTRON	INTRON	ORC3	ENSG00000135336.16	ENST00000546266.5:ENST00000257789.4:ENST00000392844.8:ENST00000681069.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	76	2	2.55649	3.2290650000000003	3.90164	0.00670547	1.25572e-4	0.0707084	0.00957656
chr22	18567704	18567803	7551029	0	-	0.545455	(0.515,0.57]	chr22	771829	148	INTRON	INTRON	PI4KAP1	ENSG00000274602.5	ENST00000612500.4:ENST00000611748.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	8	158	2	3.12681	3.229065	3.33132	3.06542e-5	7.95825e-6	0.00459725	0.0020223
chr2	20321119	20321218	1076483	0	-	0.474747	(0.44,0.476]	chr2	115021	21	INTRON	INTRON	PUM2	ENSG00000055917.16	ENST00000338086.9:ENST00000361078.7:ENST00000442400.5:ENST00000420234.5:ENST00000429419.6:ENST00000432105.5:ENST00000446940.5:ENST00000424110.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	34	2	1.85146	3.228965	4.60647	0.0545846	0.0102339	0.182529	0.0850389
chr22	20048628	20048728	7478022	0	+	0.46	(0.44,0.476]	chr22	762649	3	SS5_PROX	SS5_PROX:INTRON	TANGO2	ENSG00000183597.16	ENST00000401886.5:ENST00000471707.5:ENST00000432198.5:ENST00000420290.6:ENST00000432883.5:ENST00000434570.6:ENST00000447208.6:ENST00000456048.5:ENST00000411907.5:ENST00000398042.6:ENST00000399807.7:ENST00000450664.5:ENST00000450019.5:ENST00000327374.9:ENST00000479679.5:ENST00000430807.5:ENST00000401833.5:ENST00000434168.5:ENST00000444651.5:ENST00000462579.5:ENST00000485715.2:ENST00000484373.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	34	2	1.85146	3.228965	4.60647	0.0545846	0.0102339	0.182529	0.0850389
chr3	71092322	71092421	1740208	0	-	0.474747	(0.44,0.476]	chr3	177205	268	INTRON	INTRON	FOXP1	ENSG00000114861.24	ENST00000318789.11:ENST00000649528.3:ENST00000615603.5:ENST00000493089.7:ENST00000649596.1:ENST00000648710.2:ENST00000475937.6:ENST00000327590.9:ENST00000648426.1:ENST00000497355.7:ENST00000648748.3:ENST00000649695.3:ENST00000498215.7:ENST00000484350.5:ENST00000648321.1:ENST00000649610.2:ENST00000648718.1:ENST00000649631.1:ENST00000491238.8:ENST00000648384.1:ENST00000648380.1:ENST00000650188.1:ENST00000650068.2:ENST00000468577.6:ENST00000649592.1:ENST00000648794.2:ENST00000649513.1:ENST00000649431.2:ENST00000647614.1:ENST00000472382.7:ENST00000649760.1:ENST00000650555.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	34	2	1.85146	3.228965	4.60647	0.0545846	0.0102339	0.182529	0.0850389
chr2	97520432	97520532	1183527	0	-	0.3	(0.28,0.32]	chr2	126902	41	INTRON	INTRON	ANKRD36B	ENSG00000196912.13	ENST00000359901.9:ENST00000258459.12	protein_coding	protein_coding	protein_coding	protein_coding	2	73	2	3.02632	3.22895	3.43158	0.0071944	0.00244075	0.0756118	0.0445752
chr17	56898515	56898614	6798985	0	-	0.40404	(0.378,0.408]	chr17	671253	22	INTRON	INTRON	TRIM25	ENSG00000121060.19	ENST00000648772.1:ENST00000682766.1:ENST00000316881.9:ENST00000537230.3:ENST00000572021.6:ENST00000570473.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	105	2	3.03888	3.22888	3.41888	0.00102794	1.00827e-4	0.029231300000000002	0.00847812
chr5	176451895	176451992	2552207	0	+	0.350515	(0.35,0.378]	chr5	243662	31	INTRON	INTRON	FAF2	ENSG00000113194.13	ENST00000510730.5:ENST00000261942.7:ENST00000506061.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	57	2	1.59904	3.2288699999999997	4.8587	0.0285976	0.00695662	0.139244	0.0718189
chr12	4557889	4557982	5067941	0	+	0.27957	[0,0.28]	chr12	478371	10	INTRON	INTRON	RAD51AP1	ENSG00000111247.15	ENST00000398012.7:ENST00000228843.13:ENST00000352618.9:ENST00000442992.6:ENST00000535558.5:ENST00000544927.5:ENST00000544931.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	109	2	2.67394	3.2287049999999997	3.78347	0.00697944	4.61323e-4	0.0718189	0.0194611
chr10	72746036	72746136	4450634	0	+	0.37	(0.35,0.378]	chr10	410760	91	INTRON	INTRON	MCU	ENSG00000156026.15	ENST00000373053.8:ENST00000357157.10:ENST00000604679.5:ENST00000604372.5:ENST00000603649.5:ENST00000605597.5:ENST00000536019.5:ENST00000604152.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	36	2	1.9755	3.22867	4.48184	0.0398617	0.0191702	0.161534	0.108861
chr8	105480733	105480833	3838869	0	+	0.47	(0.44,0.476]	chr8	354063	291	INTRON	INTRON	ZFPM2	ENSG00000169946.14	ENST00000407775.7:ENST00000520492.5:ENST00000520027.5:ENST00000524235.5:ENST00000511341.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	103	2	2.53021	3.228665	3.92712	8.87528e-4	1.7642e-4	0.0271952	0.01216
chr13	98567494	98567594	5643697	0	-	0.5	(0.476,0.515]	chr13	537505	456	INTRON	INTRON	STK24	ENSG00000102572.15	ENST00000539966.6:ENST00000397517.6:ENST00000491878.5:ENST00000481288.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	28	2	2.48527	3.22864	3.97201	0.03496	0.030904	0.143385	0.13747500000000001
chr9	88398008	88398108	4152142	0	+	0.51	(0.476,0.515]	chr9	378721	82	INTRON	INTRON	SPIN1	ENSG00000106723.17	ENST00000485804.5:ENST00000469017.6:ENST00000375859.4:ENST00000462844.5:ENST00000485565.6:ENST00000483785.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	28	2	2.48527	3.22864	3.97201	0.03496	0.030904	0.143385	0.13747500000000001
chr18	31906267	31906366	6961021	0	-	0.373737	(0.35,0.378]	chr18	688740	49	INTRON	INTRON	TRAPPC8	ENSG00000153339.15	ENST00000283351.10:ENST00000580104.5:ENST00000582539.5:ENST00000582513.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	65	2	1.66633	3.2285600000000003	4.79079	0.0168241	0.00846427	0.11068	0.0776969
chr19	3978928	3979028	7119096	0	-	0.47	(0.44,0.476]	chr19	716075	2	SS5_PROX	SS5_PROX:INTRON	EEF2	ENSG00000167658.16	ENST00000309311.7:ENST00000596417.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	17	386	2	2.99821	3.22853	3.45885	3.84051e-6	4.50539e-7	0.0014153	3.53987e-4
chr20	50527280	50527380	7286083	0	+	0.41	(0.408,0.44]	chr20	741241	163	INTRON	INTRON	PTPN1	ENSG00000196396.10	ENST00000541713.5:ENST00000371621.5	protein_coding	protein_coding	protein_coding	protein_coding	5	123	2	2.93869	3.22849	3.51829	2.73901e-4	9.30234e-5	0.0147448	0.00857086
chr7	158804766	158804866	3689566	0	-	0.51	(0.476,0.515]	chr7	342421	53	INTRON	INTRON	ESYT2	ENSG00000117868.18	ENST00000251527.10:ENST00000275418.13:ENST00000652148.1:ENST00000483958.5:ENST00000497111.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	76	2	2.49941	3.2284550000000003	3.9575	0.00811651	9.49972e-5	0.0766625	0.00818267
chr1	19606923	19607022	40494	0	+	0.353535	(0.35,0.378]	chr1	4746	56	INTRON	INTRON	MICOS10	ENSG00000173436.15	ENST00000648702.1:ENST00000617872.4:ENST00000322753.7:ENST00000486890.5:ENST00000462646.5:ENST00000467029.5:ENST00000481464.5:ENST00000498642.5:ENST00000485362.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	27	2	2.48657	3.228445	3.97032	0.0578667	0.032907	0.167723	0.145164
chr1	180992176	180992274	596041	0	-	0.357143	(0.35,0.378]	chr1	71239	17	INTRON	INTRON	STX6	ENSG00000135823.14	ENST00000542060.5:ENST00000258301.6	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	2.48657	3.228445	3.97032	0.0578667	0.032907	0.167723	0.145164
chr1	206609759	206609859	624844	0	-	0.37	(0.35,0.378]	chr1	74418	3	SS3_PROX	SS3_PROX:INTRON	EIF2D	ENSG00000143486.16	ENST00000271764.7:ENST00000367114.7:ENST00000437518.1:ENST00000620382.4:ENST00000474408.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	27	2	2.48657	3.228445	3.97032	0.0578667	0.032907	0.167723	0.145164
chr11	68552077	68552175	4818259	0	+	0.377551	(0.35,0.378]	chr11	448965	5	INTRON	INTRON	PPP6R3	ENSG00000110075.15	ENST00000529907.5:ENST00000534534.5:ENST00000524845.5:ENST00000393800.7:ENST00000265637.8:ENST00000524904.5:ENST00000393801.7:ENST00000265636.9:ENST00000529710.5:ENST00000527403.6	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	2.48657	3.228445	3.97032	0.0578667	0.032907	0.167723	0.145164
chr12	116255984	116256083	5425334	0	-	0.353535	(0.35,0.378]	chr12	518291	179	INTRON	INTRON	MED13L	ENSG00000123066.9	ENST00000281928.9:ENST00000650226.1:ENST00000548743.2:ENST00000551197.2:ENST00000650375.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	27	2	2.48657	3.228445	3.97032	0.0578667	0.032907	0.167723	0.145164
chr13	72747810	72747909	5509262	0	+	0.353535	(0.35,0.378]	chr13	527154	3	INTRON	INTRON	BORA	ENSG00000136122.18	ENST00000652266.1:ENST00000613797.4:ENST00000651477.1:ENST00000390667.11:ENST00000651376.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	27	2	2.48657	3.228445	3.97032	0.0578667	0.032907	0.167723	0.145164
chr3	15588554	15588651	1622334	0	-	0.360825	(0.35,0.378]	chr3	167836	16	INTRON	INTRON	HACL1	ENSG00000131373.15	ENST00000321169.10:ENST00000628377.2:ENST00000435217.6:ENST00000451445.6:ENST00000383779.8:ENST00000456194.6:ENST00000457447.6:ENST00000422591.5:ENST00000421993.5:ENST00000414979.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	27	2	2.48657	3.228445	3.97032	0.0578667	0.032907	0.167723	0.145164
chr7	30584215	30584314	3513331	0	-	0.373737	(0.35,0.378]	chr7	327600	32	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	GARS1-DT	ENSG00000196295.13	ENST00000426529.6:ENST00000656284.1:ENST00000660767.1:ENST00000584199.5:ENST00000667338.1:ENST00000581794.6:ENST00000581665.6:ENST00000663944.1:ENST00000584372.5:ENST00000582733.5:ENST00000667129.1:ENST00000584023.2:ENST00000579174.5:ENST00000689508.1:ENST00000580440.7:ENST00000454922.6:ENST00000667137.1:ENST00000657049.1:ENST00000578994.5:ENST00000583664.5:ENST00000582549.1:ENST00000656943.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	1	27	2	2.48657	3.228445	3.97032	0.0578667	0.032907	0.167723	0.145164
chr7	135425138	135425237	3648110	0	-	0.373737	(0.35,0.378]	chr7	339179	24	INTRON	INTRON	CNOT4	ENSG00000080802.20	ENST00000541284.6:ENST00000451834.5:ENST00000423368.6:ENST00000361528.8:ENST00000414802.5:ENST00000428680.6:ENST00000315544.6:ENST00000491203.5:ENST00000498534.5:ENST00000465721.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	27	2	2.48657	3.228445	3.97032	0.0578667	0.032907	0.167723	0.145164
chrX	154803513	154803610	7915594	0	-	0.350515	(0.35,0.378]	chrX	806179	33	INTRON	INTRON	MPP1	ENSG00000130830.15	ENST00000369534.8:ENST00000413259.7:ENST00000439370.5:ENST00000393531.5:ENST00000453245.5:ENST00000494170.1:ENST00000393529.5:ENST00000475943.5:ENST00000428488.1:ENST00000417435.5:ENST00000369531.1:ENST00000471821.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	27	2	2.48657	3.228445	3.97032	0.0578667	0.032907	0.167723	0.145164
chr1	171528943	171529043	253660	0	+	0.54	(0.515,0.57]	chr1	30152	7	INTRON	INTRON	PRRC2C	ENSG00000117523.18	ENST00000647382.2:ENST00000367742.7:ENST00000476522.5:ENST00000338920.8:ENST00000426496.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	49	2	3.03037	3.228405	3.42644	0.00608732	0.00106731	0.0676501	0.0300133
chr7	1430960	1431058	3461974	0	-	0.540816	(0.515,0.57]	chr7	323645	18	INTRON	INTRON	MICALL2	ENSG00000164877.19	ENST00000493998.1:ENST00000496184.1:ENST00000472100.5	protein_coding	retained_intron	protein_coding	retained_intron	2	49	2	3.03037	3.228405	3.42644	0.00608732	0.00106731	0.0676501	0.0300133
chr12	122217145	122217237	5439622	0	-	0.315217	(0.28,0.32]	chr12	520173	4	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	DIABLO	ENSG00000184047.20	ENST00000443649.9:ENST00000650715.1:ENST00000464942.7:ENST00000353548.11:ENST00000644227.1:ENST00000644509.1:ENST00000342392.3:ENST00000645569.1:ENST00000267169.11:ENST00000489781.3:ENST00000540535.6:ENST00000642640.1:ENST00000439489.6:ENST00000541273.6:ENST00000474004.6:ENST00000541656.6:ENST00000446652.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	33	2	2.32871	3.22839	4.12807	0.0581621	0.0338135	0.167723	0.146709
chr9	130851669	130851769	4215242	0	+	0.31	(0.28,0.32]	chr9	386432	158	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000393293.4:ENST00000318560.6	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	2.32871	3.22839	4.12807	0.0581621	0.0338135	0.167723	0.146709
chrX	155921973	155922072	7741208	0	+	0.282828	(0.28,0.32]	chrX	792648	17	INTRON	INTRON	VAMP7	ENSG00000124333.16	ENST00000286448.12:ENST00000479687.6:ENST00000488344.6:ENST00000463317.6:ENST00000262640.11:ENST00000460621.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	33	2	2.32871	3.22839	4.12807	0.0581621	0.0338135	0.167723	0.146709
chr19	13134499	13134599	7022812	0	+	0.5	(0.476,0.515]	chr19	698372	22	INTRON	INTRON	NACC1	ENSG00000160877.6	ENST00000586171.2:ENST00000292431.5	protein_coding	protein_coding	protein_coding	protein_coding	3	47	2	1.93059	3.228295	4.526	0.023762	0.00699701	0.118822	0.0754576
chr5	28858534	28858634	2330335	0	+	0.42	(0.408,0.44]	chr5	225135	480	INTRON	INTRON	LINC02109	ENSG00000259786.7	ENST00000658190.1	lncRNA	lncRNA	lncRNA	lncRNA	5	104	2	2.41796	3.2282699999999998	4.03858	0.0015483	1.05823e-4	0.0363194	0.00920724
chr9	111910705	111910805	4184590	0	+	0.45	(0.44,0.476]	chr9	381684	130	INTRON	INTRON	UGCG	ENSG00000148154.10	ENST00000374279.4:ENST00000489355.1:ENST00000495085.1:ENST00000490110.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	169	2	2.37109	3.2282650000000004	4.08544	1.43076e-4	7.98065e-5	0.0103703	0.00801397
chr5	6746013	6746113	2316169	0	+	0.54	(0.515,0.57]	chr5	224300	2	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	TENT4A	ENSG00000112941.14	ENST00000230859.8:ENST00000631941.2:ENST00000511764.5:ENST00000514697.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	49	2	3.2024	3.2282599999999997	3.25412	0.00322022	0.00224554	0.0507087	0.0435144
chr16	88948918	88949018	6541016	0	-	0.49	(0.476,0.515]	chr16	634104	72	INTRON	INTRON	CBFA2T3	ENSG00000129993.15	ENST00000268679.9:ENST00000563640.1:ENST00000570046.1	protein_coding	protein_coding	protein_coding	protein_coding	3	76	2	2.87406	3.2282450000000003	3.58243	0.00188729	6.18479e-4	0.0391691	0.0223951
chr2	210019078	210019168	1000497	0	+	0.244444	[0,0.28]	chr2	107413	5	INTRON	INTRON	RPE	ENSG00000197713.15	ENST00000354506.10:ENST00000436630.6:ENST00000408981.6:ENST00000429921.5:ENST00000454822.5:ENST00000359429.11:ENST00000429907.5:ENST00000438204.6:ENST00000452025.5:ENST00000445268.5:ENST00000411934.6:ENST00000435437.2	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	2.49527	3.2282450000000003	3.96122	0.0617993	0.0436497	0.193423	0.14882
chr5	103187676	103187776	2440742	0	+	0.19	[0,0.28]	chr5	234333	3	SS5_PROX	SS5_PROX:INTRON	PPIP5K2	ENSG00000145725.20	ENST00000321521.13:ENST00000358359.8:ENST00000613674.4:ENST00000414217.5:ENST00000627916.2:ENST00000509597.5:ENST00000511724.1:ENST00000613907.4:ENST00000511022.2:ENST00000510672.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	38	2	2.49527	3.2282450000000003	3.96122	0.0617993	0.0436497	0.193423	0.14882
chr5	109343889	109343989	2701701	0	-	0.46	(0.44,0.476]	chr5	254313	3	SS5_PROX	SS5_PROX:INTRON	PJA2	ENSG00000198961.10	ENST00000361557.4:ENST00000361189.7	protein_coding	protein_coding	protein_coding	protein_coding	2	57	2	2.86231	3.22824	3.59417	0.012214	5.78231e-4	0.0910127	0.0218253
chr17	46132931	46133031	6784265	0	-	0.39	(0.378,0.408]	chr17	669216	117	INTRON	INTRON	KANSL1	ENSG00000120071.15	ENST00000574590.6:ENST00000572904.6:ENST00000432791.7:ENST00000575318.6:ENST00000638275.1:ENST00000262419.10:ENST00000648792.1:ENST00000639531.1:ENST00000639150.1:ENST00000639853.1:ENST00000571698.2:ENST00000639375.1:ENST00000638269.1:ENST00000576248.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	132	2	1.9089	3.228125	4.54735	0.00763296	3.0154e-6	0.0752119	0.00111586
chr3	183730445	183730545	1580621	0	+	0.47	(0.44,0.476]	chr3	163056	12	INTRON	INTRON	YEATS2	ENSG00000163872.16	ENST00000305135.10	protein_coding	protein_coding	protein_coding	protein_coding	5	103	2	2.47437	3.2281050000000002	3.98184	0.00117531	1.34748e-4	0.0316592	0.0106044
chr1	647628	647728	356424	0	-	0.41	(0.408,0.44]	chr1	41087	146	INTRON	INTRON	ENSG00000230021	ENSG00000230021.10	ENST00000419394.2:ENST00000634337.2:ENST00000635509.2:ENST00000648019.1:ENST00000440200.5	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	3	41	2	1.6306	3.2279500000000003	4.8253	0.0544158	0.0056738	0.182272	0.0653997
chr7	50712484	50712583	3531860	0	-	0.424242	(0.408,0.44]	chr7	329479	11	INTRON	INTRON	GRB10	ENSG00000106070.20	ENST00000335866.7:ENST00000398812.6:ENST00000401949.6:ENST00000402578.5:ENST00000644769.1:ENST00000403097.6:ENST00000644879.1:ENST00000406641.5:ENST00000402497.6:ENST00000357271.9:ENST00000643299.1:ENST00000407526.6:ENST00000645075.2:ENST00000439044.7:ENST00000644716.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	41	2	1.6306	3.2279500000000003	4.8253	0.0544158	0.0056738	0.182272	0.0653997
chr20	35009334	35009422	7332058	0	-	0.477273	(0.476,0.515]	chr20	746905	2	INTRON	INTRON	TRPC4AP	ENSG00000100991.12	ENST00000252015.3:ENST00000451813.6	protein_coding	protein_coding	protein_coding	protein_coding	2	36	2	2.32001	3.227935	4.13586	0.031846	0.0136217	0.13151	0.101682
chr2	233846416	233846512	1343778	0	-	0.479167	(0.476,0.515]	chr2	140841	2	INTRON	INTRON	HJURP	ENSG00000123485.12	ENST00000432087.5:ENST00000441687.5:ENST00000411486.7:ENST00000414924.5:ENST00000454020.1:ENST00000453122.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	121	2	2.95049	3.227895	3.5053	2.60757e-4	9.14136e-5	0.014326	0.00850096
chr4	32085466	32085566	1942303	0	+	0.49	(0.476,0.515]	chr4	194727	873	INTRON	INTRON	LINC02506	ENSG00000251129.3	ENST00000662669.1:ENST00000665582.2:ENST00000667252.2:ENST00000660373.2:ENST00000684849.1:ENST00000513211.2:ENST00000659613.1:ENST00000657576.1:ENST00000686730.1:ENST00000685407.1:ENST00000685455.1:ENST00000655951.1	lncRNA	lncRNA	lncRNA	lncRNA	3	41	2	1.61586	3.22774	4.83962	0.0567093	0.00480934	0.185107	0.0602209
chr6	156874146	156874246	3008127	0	+	0.51	(0.476,0.515]	chr6	281111	21	INTRON	INTRON	ARID1B	ENSG00000049618.24	ENST00000346085.10:ENST00000636930.2:ENST00000647938.1:ENST00000350026.10:ENST00000674298.1:ENST00000674190.1:ENST00000636748.1:ENST00000414678.7:ENST00000638000.1:ENST00000636205.1:ENST00000637532.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	41	2	1.61586	3.22774	4.83962	0.0567093	0.00480934	0.185107	0.0602209
chr1	1889763	1889863	362828	0	-	0.35	(0.32,0.35]	chr1	42311	497	INTRON	INTRON	GNB1	ENSG00000078369.18	ENST00000610897.4:ENST00000615252.4:ENST00000378609.9:ENST00000439272.6:ENST00000434686.6:ENST00000472614.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	119	2	3.20479	3.22763	3.25047	5.01598e-4	3.7902e-4	0.0207034	0.0176313
chr4	2545358	2545458	1912603	0	+	0.35	(0.32,0.35]	chr4	191976	78	INTRON	INTRON	RNF4:FAM193A	ENSG00000063978.16:ENSG00000125386.16	ENST00000508235.1:ENST00000637812.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	88	2	3.1766200000000002	3.2276	3.27858	0.00368368	4.35341e-4	0.0535094	0.0187673
chr12	53027089	53027185	5141634	0	+	0.385417	(0.378,0.408]	chr12	485021	14	INTRON	INTRON	EIF4B	ENSG00000063046.18	ENST00000549077.5:ENST00000262056.14:ENST00000420463.7:ENST00000416762.7:ENST00000550704.5:ENST00000549481.5:ENST00000552490.5:ENST00000550390.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	80	2	2.65815	3.227595	3.79704	0.00391167	3.6912e-4	0.0569957	0.0178272
chrX	24075066	24075162	7630946	0	+	0.614583	(0.57,1]	chrX	781493	13	INTRON	INTRON	EIF2S3	ENSG00000130741.11	ENST00000253039.9:ENST00000457332.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	87	2	3.08169	3.22758	3.37347	1.94297e-5	9.61542e-6	0.00357248	0.00224473
chr22	31403604	31403704	7503049	0	+	0.53	(0.515,0.57]	chr22	765599	4	SS5_PROX	SS5_PROX:INTRON	DRG1	ENSG00000185721.13	ENST00000331457.9:ENST00000416465.5:ENST00000433341.5:ENST00000486584.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	38	2	1.94493	3.227465	4.51	0.0204583	0.00809449	0.122204	0.0766625
chr7	92537823	92537921	3354605	0	+	0.428571	(0.408,0.44]	chr7	312666	10	UTR3	UTR3:EXON_MRNA	RBM48	ENSG00000127993.16	ENST00000481551.5:ENST00000265732.10	protein_coding	protein_coding	protein_coding	protein_coding	3	76	2	2.82511	3.2274149999999997	3.62972	0.00189528	7.19047e-4	0.0402736	0.0246202
chr12	123363103	123363203	5445191	0	-	0.32	(0.28,0.32]	chr12	521118	123	INTRON	INTRON	SBNO1	ENSG00000139697.14	ENST00000602398.3:ENST00000267176.8	protein_coding	protein_coding	protein_coding	protein_coding	2	71	2	2.87382	3.22741	3.581	0.014868	8.63544e-4	0.0989021	0.0266494
chr5	65950285	65950385	2371081	0	+	0.39	(0.378,0.408]	chr5	228472	231	INTRON	INTRON	ERBIN	ENSG00000112851.15	ENST00000380943.6:ENST00000507490.1:ENST00000416865.6:ENST00000380935.5:ENST00000284037.10:ENST00000380938.6:ENST00000511297.5:ENST00000506030.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	48	2	1.51223	3.227365	4.9425	0.051139	0.00452675	0.176696	0.0595107
chr20	47289400	47289495	7348832	0	-	0.378947	(0.378,0.408]	chr20	749312	18	INTRON	INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000467200.6:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000468376.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	158	2	1.90616	3.2273549999999998	4.54855	0.00266058	7.73588e-6	0.0476028	0.00209777
chr3	152382979	152383079	1536131	0	+	0.47	(0.44,0.476]	chr3	160003	474	INTRON	INTRON	MBNL1	ENSG00000152601.18	ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000495875.6:ENST00000324210.10:ENST00000493459.5:ENST00000459747.1:ENST00000460591.5:ENST00000545754.5:ENST00000357472.7:ENST00000324196.9:ENST00000498502.5:ENST00000463374.5:ENST00000485910.5:ENST00000465907.6:ENST00000492948.5:ENST00000485509.5:ENST00000464596.5	protein_coding	protein_coding	protein_coding	protein_coding	3	41	2	1.69402	3.22735	4.76068	0.0456129	0.00653414	0.164236	0.0699952
chr1	28580079	28580172	409405	0	-	0.44086	(0.44,0.476]	chr1	49297	3	EXON_MRNA	EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SNHG12	ENSG00000197989.15	ENST00000648127.1:ENST00000470977.6:ENST00000531126.7:ENST00000461832.2:ENST00000481368.6:ENST00000692541.1:ENST00000693199.1:ENST00000461448.6:ENST00000481220.6:ENST00000464612.5:ENST00000474814.1:ENST00000475441.6:ENST00000488745.5:ENST00000483436.5:ENST00000650259.1:ENST00000650239.1:ENST00000648251.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	15	281	2	2.56369	3.2273449999999997	3.891	4.29301e-5	5.38584e-6	0.00557112	0.00160484
chr12	15882982	15883082	5084126	0	+	0.4	(0.378,0.408]	chr12	480515	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	STRAP	ENSG00000023734.11	ENST00000419869.7:ENST00000541731.1:ENST00000025399.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	35	2	2.04292	3.2273050000000003	4.41169	0.0326035	0.0199606	0.145164	0.109608
chr13	112709133	112709233	5546442	0	+	0.38	(0.378,0.408]	chr13	529921	54	INTRON	INTRON	ATP11A	ENSG00000068650.19	ENST00000375645.8:ENST00000375630.6:ENST00000487903.5:ENST00000419448.1:ENST00000466946.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	35	2	2.04292	3.2273050000000003	4.41169	0.0326035	0.0199606	0.145164	0.109608
chr16	27478731	27478831	6466538	0	-	0.39	(0.378,0.408]	chr16	624275	2	SS3_PROX	SS3_PROX:INTRON	GTF3C1	ENSG00000077235.18	ENST00000356183.9:ENST00000561623.5:ENST00000569653.1:ENST00000564664.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	35	2	2.04292	3.2273050000000003	4.41169	0.0326035	0.0199606	0.145164	0.109608
chrX	119604742	119604839	7873103	0	-	0.391753	(0.378,0.408]	chrX	801781	8	INTRON	INTRON	NKRF	ENSG00000186416.18	ENST00000304449.8:ENST00000542113.3:ENST00000688521.1	protein_coding	protein_coding	protein_coding	protein_coding	2	35	2	2.04292	3.2273050000000003	4.41169	0.0326035	0.0199606	0.145164	0.109608
chr10	73010303	73010403	4646967	0	-	0.24	[0,0.28]	chr10	427475	4	SS3_PROX	SS3_PROX:INTRON	P4HA1	ENSG00000122884.13	ENST00000394890.7:ENST00000307116.6:ENST00000373008.6:ENST00000440381.5:ENST00000263556.3:ENST00000464310.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	109	2	2.69869	3.227275	3.75586	0.00643225	5.203e-4	0.0697113	0.0204523
chr12	57062422	57062520	5336679	0	-	0.5	(0.476,0.515]	chr12	510345	11	INTRON	INTRON	NEMP1	ENSG00000166881.10	ENST00000300128.9:ENST00000379391.7:ENST00000554340.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	92	2	2.67242	3.22727	3.78212	0.00136918	2.36145e-4	0.0336718	0.0136195
chr4	470377	470477	2092883	0	-	0.32	(0.28,0.32]	chr4	206783	256	INTRON	INTRON	ABCA11P:ZNF721	ENSG00000251595.7:ENSG00000182903.16	ENST00000451020.6:ENST00000514396.5:ENST00000507854.1:ENST00000515578.5:ENST00000506646.5:ENST00000507078.1:ENST00000511833.3:ENST00000338977.5:ENST00000505900.1	protein_coding	protein_coding	protein_coding:transcribed_processed_pseudogene	protein_coding:nonsense_mediated_decay:processed_transcript	2	71	2	3.22074	3.227145	3.23355	0.004869	0.00362783	0.0607461	0.055479
chr5	66172246	66172346	2372781	0	+	0.3	(0.28,0.32]	chr5	228690	9	INTRON	INTRON	SREK1	ENSG00000153914.16	ENST00000334121.11:ENST00000520953.5:ENST00000522912.5:ENST00000380918.7:ENST00000284041.7:ENST00000519259.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	71	2	3.22074	3.227145	3.23355	0.004869	0.00362783	0.0607461	0.055479
chr4	126544715	126544815	2236156	0	-	0.44	(0.408,0.44]	chr4	219023	792	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	7	62	2	1.20916	3.2270849999999998	5.24501	0.0631681	0.00137378	0.197212	0.0336718
chr16	69636843	69636943	6380721	0	+	0.39	(0.378,0.408]	chr16	613175	44	INTRON	INTRON	NFAT5	ENSG00000102908.22	ENST00000426654.6:ENST00000349945.7:ENST00000354436.6:ENST00000627621.3:ENST00000650987.1:ENST00000567990.5:ENST00000567239.5:ENST00000393742.7:ENST00000565301.2:ENST00000566899.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	36	2	2.23831	3.2269699999999997	4.21563	0.0315429	0.0179575	0.13151	0.114265
chr3	122429105	122429204	1800745	0	-	0.393939	(0.378,0.408]	chr3	180953	10	INTRON	INTRON	KPNA1	ENSG00000114030.13	ENST00000344337.11:ENST00000470904.5:ENST00000466923.5:ENST00000485027.5:ENST00000494339.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	36	2	2.23831	3.2269699999999997	4.21563	0.0315429	0.0179575	0.13151	0.114265
chr11	61473302	61473402	4796963	0	+	0.45	(0.44,0.476]	chr11	444325	42	INTRON	INTRON	ENSG00000256591	ENSG00000256591.5	ENST00000544025.5:ENST00000541135.5:ENST00000538594.5:ENST00000544801.5:ENST00000544880.1:ENST00000543044.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	34	2	1.93084	3.22677	4.5227	0.0443175	0.0128818	0.162302	0.0926667
chr2	235718892	235718991	1043592	0	+	0.464646	(0.44,0.476]	chr2	111247	1	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1:ENST00000402604.6:ENST00000409538.5:ENST00000614409.4:ENST00000619456.4:ENST00000428334.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	34	2	1.93084	3.22677	4.5227	0.0443175	0.0128818	0.162302	0.0926667
chr4	159202724	159202824	2074498	0	+	0.46	(0.44,0.476]	chr4	205184	91	INTRON	INTRON	RAPGEF2	ENSG00000109756.10	ENST00000644474.1:ENST00000691494.1:ENST00000505478.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	34	2	1.93084	3.22677	4.5227	0.0443175	0.0128818	0.162302	0.0926667
chr6	32118538	32118606	3081405	0	-	0.529412	(0.515,0.57]	chr6	287822	1	SS5_PROX	SS5_PROX:INTRON	ATF6B	ENSG00000213676.13	ENST00000375201.8:ENST00000375203.8:ENST00000453203.2	protein_coding	protein_coding	protein_coding	protein_coding	4	80	2	2.15866	3.2267399999999995	4.29482	0.0100547	9.59903e-6	0.0848452	0.00224473
chr11	3957986	3958085	4724491	0	+	0.484848	(0.476,0.515]	chr11	437149	99	INTRON	INTRON	STIM1	ENSG00000167323.12	ENST00000525403.5:ENST00000526596.2:ENST00000300737.8:ENST00000616714.4:ENST00000527651.5:ENST00000532610.5:ENST00000532919.5:ENST00000530554.5:ENST00000524822.5:ENST00000528656.5:ENST00000525055.5:ENST00000532990.1	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	2.23335	3.226495	4.21964	0.0634557	0.0167715	0.177047	0.110511
chr15	28665704	28665803	5988706	0	+	0.484848	(0.476,0.515]	chr15	569376	18	INTRON	INTRON	HERC2P9	ENSG00000206149.11	ENST00000529624.5:ENST00000530420.5:ENST00000528584.5	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript:transcribed_unprocessed_pseudogene	1	27	2	2.23335	3.226495	4.21964	0.0634557	0.0167715	0.177047	0.110511
chr15	78542394	78542482	6068487	0	+	0.477273	(0.476,0.515]	chr15	578085	3	EXON_MRNA	EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PSMA4	ENSG00000041357.16	ENST00000560217.5:ENST00000559082.5:ENST00000413382.6:ENST00000559948.5:ENST00000560033.5:ENST00000559146.5:ENST00000044462.12:ENST00000559934.5:ENST00000558639.5:ENST00000558635.1:ENST00000560099.5:ENST00000557929.5:ENST00000558281.5:ENST00000559365.5:ENST00000558341.5:ENST00000559437.5:ENST00000560737.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	27	2	2.23335	3.226495	4.21964	0.0634557	0.0167715	0.177047	0.110511
chr16	22447124	22447224	6322038	0	+	0.5	(0.476,0.515]	chr16	605299	90	INTRON	INTRON	SMG1P1	ENSG00000237296.10	ENST00000446662.5:ENST00000381231.5:ENST00000309865.11:ENST00000691795.1:ENST00000308347.10:ENST00000687936.1:ENST00000691423.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	1	27	2	2.23335	3.226495	4.21964	0.0634557	0.0167715	0.177047	0.110511
chr16	50036225	50036320	6347088	0	+	0.494737	(0.476,0.515]	chr16	609201	9	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CNEP1R1	ENSG00000205423.12	ENST00000458059.7:ENST00000427478.7:ENST00000568890.5:ENST00000565457.5:ENST00000565556.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	27	2	2.23335	3.226495	4.21964	0.0634557	0.0167715	0.177047	0.110511
chr16	72624938	72625038	6518918	0	-	0.49	(0.476,0.515]	chr16	631382	70	INTRON	INTRON	LINC01572	ENSG00000261008.8	ENST00000624829.4:ENST00000561611.2:ENST00000656218.1:ENST00000666555.2:ENST00000664155.1:ENST00000657725.1:ENST00000563770.5:ENST00000668081.1:ENST00000570152.2:ENST00000662171.1:ENST00000691892.1:ENST00000659470.1:ENST00000655530.1:ENST00000570035.5:ENST00000563823.6	lncRNA	lncRNA	lncRNA	lncRNA	1	27	2	2.23335	3.226495	4.21964	0.0634557	0.0167715	0.177047	0.110511
chr16	88572748	88572847	6418283	0	+	0.50505	(0.476,0.515]	chr16	615784	18	INTRON	INTRON	ZC3H18	ENSG00000158545.16	ENST00000301011.10:ENST00000452588.6:ENST00000569435.5	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	2.23335	3.226495	4.21964	0.0634557	0.0167715	0.177047	0.110511
chr2	126683444	126683543	862283	0	+	0.484848	(0.476,0.515]	chr2	96617	47	INTRON	INTRON	GYPC	ENSG00000136732.16	ENST00000259254.9:ENST00000409836.3:ENST00000356887.12	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	2.23335	3.226495	4.21964	0.0634557	0.0167715	0.177047	0.110511
chr5	36913464	36913564	2338797	0	+	0.5	(0.476,0.515]	chr5	225949	271	INTRON	INTRON	NIPBL	ENSG00000164190.19	ENST00000282516.13:ENST00000448238.2:ENST00000652901.1	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	2.23335	3.226495	4.21964	0.0634557	0.0167715	0.177047	0.110511
chr5	132244816	132244916	2721361	0	-	0.49	(0.476,0.515]	chr5	255840	167	INTRON	INTRON	P4HA2	ENSG00000072682.20	ENST00000431054.5:ENST00000439698.5:ENST00000416053.5	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	2.23335	3.226495	4.21964	0.0634557	0.0167715	0.177047	0.110511
chr6	110889569	110889666	2939094	0	+	0.484536	(0.476,0.515]	chr6	276776	7	EXON_MRNA	EXON_MRNA:INTRON	AMD1	ENSG00000123505.19	ENST00000451850.6:ENST00000675380.1:ENST00000368882.8:ENST00000672937.2:ENST00000368885.8:ENST00000368877.9:ENST00000368876.2:ENST00000612642.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	27	2	2.23335	3.226495	4.21964	0.0634557	0.0167715	0.177047	0.110511
chrX	77984464	77984564	7685783	0	+	0.51	(0.476,0.515]	chrX	786870	65	INTRON	INTRON	ATP7A:PGK1	ENSG00000165240.22:ENSG00000102144.15	ENST00000693051.1:ENST00000341514.11:ENST00000688746.1:ENST00000688338.1:ENST00000685264.1:ENST00000686515.1:ENST00000687086.1:ENST00000689530.1:ENST00000686999.1:ENST00000644362.1:ENST00000343533.10:ENST00000686543.1:ENST00000686033.1:ENST00000692908.1:ENST00000686688.1:ENST00000686480.1:ENST00000689649.1:ENST00000686416.1:ENST00000682742.2:ENST00000685434.1:ENST00000693387.1:ENST00000688249.1:ENST00000689891.1:ENST00000691152.1:ENST00000688889.1:ENST00000687984.1:ENST00000685208.1:ENST00000687599.1:ENST00000685885.1:ENST00000687082.1:ENST00000686133.1:ENST00000645094.1:ENST00000689541.1:ENST00000693398.1:ENST00000692110.1:ENST00000687325.1:ENST00000689767.1:ENST00000687628.1:ENST00000691456.1:ENST00000687416.1:ENST00000689872.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	27	2	2.23335	3.226495	4.21964	0.0634557	0.0167715	0.177047	0.110511
chr1	40386767	40386866	81574	0	+	0.232323	[0,0.28]	chr1	10553	117	INTRON	INTRON	SMAP2	ENSG00000084070.12	ENST00000435168.6:ENST00000372718.8:ENST00000372708.5	protein_coding	protein_coding	protein_coding	protein_coding	3	109	2	3.20629	3.22644	3.24659	0.00570201	5.56536e-4	0.0656459	0.0214853
chr8	143731097	143731196	4083555	0	-	0.343434	(0.32,0.35]	chr8	371135	1	INTRON	INTRON	FAM83H	ENSG00000180921.7	ENST00000650760.1:ENST00000388913.4	protein_coding	protein_coding	protein_coding	protein_coding	3	52	2	1.73318	3.2264399999999998	4.7197	0.0462868	0.00568521	0.150684	0.0678837
chr8	143590893	143590979	4083233	0	-	0.604651	(0.57,1]	chr8	371003	1	SS3_PROX	SS3_PROX:INTRON	EEF1D	ENSG00000104529.19	ENST00000317198.10:ENST00000532400.1:ENST00000529272.5:ENST00000395119.7:ENST00000533833.5:ENST00000528610.5:ENST00000442189.6:ENST00000618139.4:ENST00000526838.5:ENST00000531621.5:ENST00000529007.5:ENST00000524624.5:ENST00000530191.6:ENST00000534377.6:ENST00000529516.6:ENST00000419152.7:ENST00000531218.6:ENST00000533494.6:ENST00000534380.6:ENST00000524397.5:ENST00000526786.5:ENST00000530848.5:ENST00000534232.5:ENST00000533749.5:ENST00000525695.5:ENST00000526340.5:ENST00000532543.1:ENST00000531931.1:ENST00000423316.7:ENST00000526710.1:ENST00000531281.1:ENST00000532596.5:ENST00000531670.5:ENST00000528519.1:ENST00000529832.5:ENST00000530306.5:ENST00000530545.5:ENST00000525261.5:ENST00000534804.5:ENST00000524900.1:ENST00000526135.5:ENST00000531953.5:ENST00000526133.1:ENST00000534475.5:ENST00000528303.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	81	2	2.66199	3.226425	3.79086	1.30577e-4	3.99829e-6	0.0103941	0.00131958
chr1	161107367	161107467	573728	0	-	0.43	(0.408,0.44]	chr1	69586	46	INTRON	INTRON	PFDN2	ENSG00000143256.5	ENST00000468311.1:ENST00000368010.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	34	2	1.85305	3.22642	4.59979	0.0543543	0.0109537	0.182243	0.0873034
chr1	220231699	220231799	640425	0	-	0.43	(0.408,0.44]	chr1	75580	117	INTRON	INTRON	RAB3GAP2	ENSG00000118873.17	ENST00000358951.7:ENST00000687065.1:ENST00000686381.1:ENST00000687647.1:ENST00000692972.1:ENST00000690315.1:ENST00000691862.1:ENST00000691661.1:ENST00000690373.1:ENST00000693602.1:ENST00000692813.1:ENST00000685286.1:ENST00000688035.1:ENST00000685664.1:ENST00000690824.1:ENST00000687394.1:ENST00000690379.1:ENST00000478976.1:ENST00000237724.9:ENST00000689820.1:ENST00000474178.1:ENST00000692208.1:ENST00000688281.1:ENST00000684982.1:ENST00000475769.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	34	2	1.85305	3.22642	4.59979	0.0543543	0.0109537	0.182243	0.0873034
chr11	33875526	33875626	4941878	0	-	0.42	(0.408,0.44]	chr11	463055	51	INTRON	INTRON	LMO2	ENSG00000135363.12	ENST00000257818.3	protein_coding	protein_coding	protein_coding	protein_coding	2	34	2	1.85305	3.22642	4.59979	0.0543543	0.0109537	0.182243	0.0873034
chr17	37339203	37339303	6762371	0	-	0.44	(0.408,0.44]	chr17	664958	84	INTRON	INTRON	ACACA	ENSG00000278540.5	ENST00000616317.5:ENST00000614428.4:ENST00000613146.4:ENST00000615229.4:ENST00000621960.1:ENST00000617548.1:ENST00000616352.4:ENST00000614789.4:ENST00000612007.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:non_stop_decay:nonsense_mediated_decay	2	34	2	1.85305	3.22642	4.59979	0.0543543	0.0109537	0.182243	0.0873034
chr19	21739280	21739380	7159015	0	-	0.41	(0.408,0.44]	chr19	723706	109	INTRON	INTRON	ZNF100	ENSG00000197020.12	ENST00000358296.11:ENST00000305570.10:ENST00000594401.1	protein_coding	protein_coding	protein_coding	protein_coding	2	34	2	1.85305	3.22642	4.59979	0.0543543	0.0109537	0.182243	0.0873034
chr3	141885553	141885653	1526164	0	+	0.42	(0.408,0.44]	chr3	159005	76	INTRON	INTRON	ATP1B3	ENSG00000069849.11	ENST00000475483.5:ENST00000465172.5:ENST00000286371.8:ENST00000466678.5:ENST00000462082.1:ENST00000495216.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	34	2	1.85305	3.22642	4.59979	0.0543543	0.0109537	0.182243	0.0873034
chr7	30141486	30141585	3300209	0	+	0.424242	(0.408,0.44]	chr7	306448	34	INTRON	INTRON	MTURN	ENSG00000180354.16	ENST00000324453.13:ENST00000409688.1:ENST00000434060.1	protein_coding	protein_coding	protein_coding	protein_coding	2	34	2	1.85305	3.22642	4.59979	0.0543543	0.0109537	0.182243	0.0873034
chr7	96283625	96283724	3575871	0	-	0.434343	(0.408,0.44]	chr7	333071	59	INTRON	INTRON	SLC25A13	ENSG00000004864.14	ENST00000265631.10:ENST00000416240.6:ENST00000472162.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	34	2	1.85305	3.22642	4.59979	0.0543543	0.0109537	0.182243	0.0873034
chr1	27910970	27911070	407758	0	-	0.51	(0.476,0.515]	chr1	49095	33	INTRON	INTRON	RPA2	ENSG00000117748.10	ENST00000373912.8:ENST00000373909.7:ENST00000313433.11:ENST00000444045.1	protein_coding	protein_coding	protein_coding	protein_coding	2	34	2	1.8388	3.22641	4.61402	0.0564473	0.00947755	0.184423	0.0817766
chr10	915495	915595	4542425	0	-	0.49	(0.476,0.515]	chr10	419304	121	INTRON	INTRON	LARP4B	ENSG00000107929.16	ENST00000316157.8:ENST00000690516.1:ENST00000476529.5:ENST00000406525.6:ENST00000481118.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	34	2	1.8388	3.22641	4.61402	0.0564473	0.00947755	0.184423	0.0817766
chr5	138983005	138983105	2733290	0	-	0.51	(0.476,0.515]	chr5	257530	297	INTRON	INTRON	SIL1	ENSG00000120725.13	ENST00000394817.7:ENST00000265195.9:ENST00000509534.5:ENST00000503732.1:ENST00000505945.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	34	2	1.8388	3.22641	4.61402	0.0564473	0.00947755	0.184423	0.0817766
chr3	38384031	38384131	1399865	0	+	0.38	(0.378,0.408]	chr3	146865	43	INTRON	INTRON	XYLB	ENSG00000093217.11	ENST00000207870.8:ENST00000650590.1:ENST00000424034.5:ENST00000649234.1:ENST00000472721.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	78	2	3.05389	3.226305	3.39872	0.0019852	6.75567e-4	0.0404516	0.0236067
chr17	70056009	70056109	6828007	0	-	0.4	(0.378,0.408]	chr17	675005	19	INTRON	INTRON	ENSG00000230258	ENSG00000230258.6	ENST00000435112.5:ENST00000587325.1	lncRNA	lncRNA	lncRNA	lncRNA	4	49	2	1.71374	3.226065	4.73839	0.0274158	0.00837252	0.136498	0.0774402
chr18	779208	779308	6940374	0	-	0.51	(0.476,0.515]	chr18	686519	37	INTRON	INTRON	YES1	ENSG00000176105.14	ENST00000584307.5:ENST00000314574.5:ENST00000577611.1:ENST00000581960.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	104	2	2.96824	3.2260400000000002	3.48384	9.98194e-4	1.02503e-4	0.0290732	0.00915589
chr12	111474317	111474416	5411956	0	-	0.393939	(0.378,0.408]	chr12	516831	25	INTRON	INTRON	ATXN2	ENSG00000204842.18	ENST00000642389.2:ENST00000608853.5:ENST00000672613.1:ENST00000673436.1:ENST00000643669.2:ENST00000389154.7:ENST00000616825.4:ENST00000389153.10:ENST00000550104.5:ENST00000483311.6:ENST00000672335.1:ENST00000492467.6:ENST00000673557.1:ENST00000673283.1:ENST00000673273.1:ENST00000673449.1:ENST00000535949.5:ENST00000542287.6:ENST00000643474.1:ENST00000643694.1:ENST00000645162.1:ENST00000551755.6:ENST00000644883.1:ENST00000647305.1:ENST00000495342.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	38	2	1.76032	3.2260050000000002	4.69169	0.0721577	0.00432302	0.187433	0.0599409
chr1	65355875	65355974	136555	0	+	0.373737	(0.35,0.378]	chr1	15358	98	INTRON	INTRON	DNAJC6	ENSG00000116675.16	ENST00000463018.5:ENST00000494710.6:ENST00000263441.11:ENST00000395325.7:ENST00000483402.1:ENST00000371069.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	151	2	2.88667	3.2259599999999997	3.56525	1.44389e-4	9.22227e-5	0.010445	0.00854209
chr3	33391066	33391165	1651200	0	-	0.424242	(0.408,0.44]	chr3	169321	8	EXON_MRNA	EXON_MRNA:INTRON	UBP1	ENSG00000153560.12	ENST00000283629.8:ENST00000492136.1:ENST00000447368.6:ENST00000466441.5:ENST00000283628.9:ENST00000486388.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	37	2	1.74775	3.225925	4.7041	0.0735403	0.00381677	0.190238	0.0562562
chr6	157984383	157984483	3017036	0	+	0.44	(0.408,0.44]	chr6	281468	19	INTRON	INTRON	SYNJ2	ENSG00000078269.15	ENST00000355585.9:ENST00000640338.1:ENST00000367113.5	protein_coding	protein_coding	protein_coding	protein_coding	2	37	2	1.74775	3.225925	4.7041	0.0735403	0.00381677	0.190238	0.0562562
chr3	37364188	37364287	1396992	0	+	0.333333	(0.32,0.35]	chr3	146465	25	INTRON	INTRON	GOLGA4	ENSG00000144674.17	ENST00000444882.5:ENST00000356847.8:ENST00000361924.7:ENST00000437131.1	protein_coding	protein_coding	protein_coding	protein_coding	2	65	2	3.03597	3.225755	3.41554	0.00832487	0.00153152	0.0774402	0.0361484
chr1	32947627	32947721	416379	0	-	0.340426	(0.32,0.35]	chr1	50298	7	INTRON	INTRON	RNF19B	ENSG00000116514.17	ENST00000373456.11:ENST00000235150.5:ENST00000356990.9	protein_coding	protein_coding	protein_coding	protein_coding	2	65	2	3.07935	3.2257249999999997	3.3721	0.00724137	0.00182912	0.0729826	0.0396683
chr1	246927242	246927341	681916	0	-	0.515152	(0.476,0.515]	chr1	80043	85	INTRON	INTRON	AHCTF1	ENSG00000153207.16	ENST00000648844.2:ENST00000326225.3:ENST00000366508.5	protein_coding	protein_coding	protein_coding	protein_coding	3	44	2	1.52615	3.22572	4.92529	0.0739267	0.00180221	0.190914	0.0392772
chr10	68070395	68070492	4637899	0	-	0.505155	(0.476,0.515]	chr10	426440	29	UTR3	UTR3:EXON_MRNA:INTRON	HERC4	ENSG00000148634.16	ENST00000373700.9:ENST00000412272.6:ENST00000395198.7:ENST00000473533.6:ENST00000427635.6:ENST00000513996.5:ENST00000395185.7:ENST00000505760.5:ENST00000492996.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	57	2	2.82673	3.225685	3.62464	0.0134403	5.079e-4	0.0946278	0.0202328
chr7	974406	974506	3460409	0	-	0.38	(0.378,0.408]	chr7	323546	1	SS5_PROX	SS5_PROX:INTRON	COX19	ENSG00000240230.6	ENST00000457254.5:ENST00000344111.4:ENST00000466146.1:ENST00000466853.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	51	2	2.02762	3.225555	4.42349	0.0181059	0.00992961	0.107247	0.0877296
chr12	104494906	104495006	5211063	0	+	0.45	(0.44,0.476]	chr12	493315	370	INTRON	INTRON	CHST11	ENSG00000171310.11	ENST00000303694.6:ENST00000547956.1:ENST00000549260.5:ENST00000546689.1	protein_coding	protein_coding	protein_coding	protein_coding	3	42	2	1.92837	3.2255350000000003	4.5227	0.0222222	0.0128818	0.124303	0.0926667
chr21	46556843	46556938	7423524	0	+	0.410526	(0.408,0.44]	chr21	757120	9	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	DIP2A	ENSG00000160305.18	ENST00000417564.3:ENST00000651436.1:ENST00000400274.5:ENST00000472364.1:ENST00000481883.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	91	2	2.57365	3.22548	3.87731	0.00172241	2.32969e-4	0.0383099	0.013966
chr20	49655867	49655967	7353047	0	-	0.45	(0.44,0.476]	chr20	749840	84	INTRON	INTRON	B4GALT5	ENSG00000158470.5	ENST00000371711.4	protein_coding	protein_coding	protein_coding	protein_coding	4	90	2	2.76603	3.2253800000000004	3.68473	6.78182e-4	5.47507e-4	0.0236375	0.0215463
chr4	67470140	67470239	2152741	0	-	0.474747	(0.44,0.476]	chr4	211903	15	UTR3	UTR3:EXON_MRNA	CENPC	ENSG00000145241.11	ENST00000273853.11	protein_coding	protein_coding	protein_coding	protein_coding	3	75	2	2.9044	3.2253600000000002	3.54632	0.00132926	9.9951e-4	0.0335085	0.0288906
chr11	28074096	28074195	4938097	0	-	0.30303	(0.28,0.32]	chr11	462472	43	INTRON	INTRON	KIF18A	ENSG00000121621.7	ENST00000263181.7	protein_coding	protein_coding	protein_coding	protein_coding	2	40	2	2.0243	3.2253000000000003	4.4263	0.0364967	0.0330296	0.153759	0.133816
chr7	138463001	138463101	3434668	0	+	0.42	(0.408,0.44]	chr7	319959	13	INTRON	INTRON	TRIM24	ENSG00000122779.18	ENST00000343526.9:ENST00000415680.6:ENST00000497516.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	297	2	3.21082	3.225275	3.23973	1.44796e-5	6.79051e-7	0.00304728	4.5546e-4
chr16	88730714	88730812	6539645	0	-	0.632653	(0.57,1]	chr16	633912	27	INTRON	INTRON	PIEZO1	ENSG00000103335.22	ENST00000301015.14	protein_coding	protein_coding	protein_coding	protein_coding	6	74	2	2.59938	3.225165	3.85095	4.6166e-4	2.74833e-6	0.0194611	0.00117563
chr20	47216392	47216491	7348088	0	-	0.525253	(0.515,0.57]	chr20	749229	33	INTRON	INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000467200.6:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4	protein_coding	protein_coding	protein_coding	protein_coding	2	51	2	2.9114	3.22492	3.53844	0.00826019	7.92613e-4	0.0813266	0.0259663
chr6	147218659	147218759	2988850	0	+	0.53	(0.515,0.57]	chr6	280001	122	INTRON	INTRON	STXBP5	ENSG00000164506.15	ENST00000321680.11:ENST00000367481.7:ENST00000546097.5:ENST00000367480.7	protein_coding	protein_coding	protein_coding	protein_coding	2	51	2	2.9114	3.22492	3.53844	0.00826019	7.92613e-4	0.0813266	0.0259663
chr6	147681337	147681437	2990809	0	+	0.35	(0.32,0.35]	chr6	280163	48	INTRON	INTRON	ENSG00000227681	ENSG00000227681.5	ENST00000427015.1:ENST00000432506.5:ENST00000442094.5	lncRNA	lncRNA	lncRNA	lncRNA	4	106	2	2.36223	3.2248900000000003	4.08755	0.00625472	6.37693e-5	0.0684171	0.00660941
chr20	23405663	23405763	7321471	0	-	0.47	(0.44,0.476]	chr20	745542	22	INTRON	INTRON	NAPB	ENSG00000125814.17	ENST00000398425.7:ENST00000432543.6:ENST00000617876.4:ENST00000377026.4:ENST00000472855.5:ENST00000468128.5:ENST00000487502.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	50	2	1.92704	3.22487	4.5227	0.0128818	0.0128054	0.0990564	0.0926667
chr12	64406816	64406914	5152903	0	+	0.438776	(0.408,0.44]	chr12	487721	11	INTRON	INTRON	XPOT	ENSG00000184575.12	ENST00000332707.10:ENST00000540203.5	protein_coding	protein_coding	protein_coding	protein_coding	3	41	2	1.69566	3.2248200000000002	4.75398	0.0453922	0.00703931	0.164236	0.0718189
chr6	20960079	20960179	2832648	0	+	0.42	(0.408,0.44]	chr6	265685	41	INTRON	INTRON	CDKAL1	ENSG00000145996.11	ENST00000274695.8:ENST00000378610.1	protein_coding	protein_coding	protein_coding	protein_coding	3	41	2	1.69566	3.2248200000000002	4.75398	0.0453922	0.00703931	0.164236	0.0718189
chr7	158676056	158676156	3688500	0	-	0.42	(0.408,0.44]	chr7	342220	4	SS3_PROX	SS3_PROX:INTRON	NCAPG2	ENSG00000146918.20	ENST00000356309.8:ENST00000432615.5:ENST00000409423.5:ENST00000441982.5:ENST00000467785.5:ENST00000409339.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	41	2	1.69566	3.2248200000000002	4.75398	0.0453922	0.00703931	0.164236	0.0718189
chr17	62007420	62007518	6810291	0	-	0.336735	(0.32,0.35]	chr17	672912	39	EXON_MRNA	EXON_MRNA:INTRON	MED13:ENSG00000279133	ENSG00000108510.10:ENSG00000279133.1	ENST00000397786.7:ENST00000624147.1	protein_coding	protein_coding	protein_coding:TEC	protein_coding:TEC	3	45	2	1.61669	3.22478	4.83287	0.0578816	0.0095071	0.188651	0.0817766
chr7	105535471	105535571	3375716	0	+	0.44	(0.408,0.44]	chr7	316042	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	RINT1	ENSG00000135249.8	ENST00000467392.5:ENST00000482041.5:ENST00000493041.5:ENST00000257700.7:ENST00000497979.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	57	2	3.20437	3.224735	3.2451	0.00337792	0.00306596	0.0516884	0.0509893
chr2	144465638	144465737	1241258	0	-	0.353535	(0.35,0.378]	chr2	131716	9	INTRON	INTRON	ZEB2	ENSG00000169554.23	ENST00000636471.1:ENST00000627532.3:ENST00000638128.1:ENST00000637304.1:ENST00000636179.1:ENST00000636820.1:ENST00000419938.5:ENST00000409487.7:ENST00000636732.2:ENST00000636026.2:ENST00000675069.1:ENST00000689298.1:ENST00000539609.7:ENST00000558170.6:ENST00000303660.8:ENST00000427902.5:ENST00000637267.2:ENST00000392861.6:ENST00000431672.4:ENST00000409211.5:ENST00000465308.5:ENST00000434448.5:ENST00000472146.5:ENST00000461784.3:ENST00000476394.5:ENST00000637591.2:ENST00000479735.1:ENST00000453352.5:ENST00000435831.5:ENST00000444559.5:ENST00000630572.2:ENST00000484313.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	98	2	2.77625	3.2246550000000003	3.67306	7.05001e-4	7.04769e-4	0.024224	0.0241881
chr19	3395920	3396020	6999920	0	+	0.49	(0.476,0.515]	chr19	694173	133	INTRON	INTRON	NFIC	ENSG00000141905.19	ENST00000641145.1:ENST00000589123.5:ENST00000395111.7:ENST00000586919.5:ENST00000341919.7:ENST00000443272.3:ENST00000590282.5	protein_coding	protein_coding	protein_coding	protein_coding	3	41	2	1.68092	3.224595	4.76827	0.0474026	0.00600704	0.169265	0.0674604
chr2	241297850	241297950	1348391	0	-	0.51	(0.476,0.515]	chr2	141648	249	INTRON	INTRON	HDLBP	ENSG00000115677.18	ENST00000310931.10:ENST00000391976.6:ENST00000428482.5:ENST00000430918.5:ENST00000441124.5:ENST00000413241.5:ENST00000423693.5:ENST00000425989.5:ENST00000420451.5:ENST00000417540.5:ENST00000462130.1:ENST00000496569.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	41	2	1.68092	3.224595	4.76827	0.0474026	0.00600704	0.169265	0.0674604
chr5	72903708	72903783	2388026	0	+	0.346667	(0.32,0.35]	chr5	230495	1	CDS	CDS:UTR3:EXON_MRNA	TNPO1	ENSG00000083312.19	ENST00000680533.1:ENST00000337273.10:ENST00000680025.1:ENST00000523768.5:ENST00000681711.1:ENST00000679378.1:ENST00000506351.6:ENST00000605210.1:ENST00000680111.1:ENST00000503084.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	66	2	2.79707	3.22447	3.65187	0.0170923	5.49434e-4	0.104099	0.0213049
chr3	129468350	129468448	1500136	0	+	0.55102	(0.515,0.57]	chr3	156786	9	INTRON	INTRON	IFT122	ENSG00000163913.14	ENST00000693654.1:ENST00000687461.1:ENST00000440957.7:ENST00000688129.1:ENST00000689313.1:ENST00000689801.1:ENST00000691583.1:ENST00000347300.6:ENST00000685282.1:ENST00000692242.1:ENST00000687377.1:ENST00000693489.1:ENST00000687645.1:ENST00000689643.1:ENST00000688970.1:ENST00000512157.6:ENST00000692228.1:ENST00000693114.1:ENST00000690862.1:ENST00000689332.1:ENST00000685921.1:ENST00000691770.1:ENST00000692985.1:ENST00000685447.1:ENST00000693162.1:ENST00000692391.1:ENST00000686531.1:ENST00000693129.1:ENST00000689796.1:ENST00000685939.1:ENST00000686830.1:ENST00000687791.1:ENST00000686473.1:ENST00000690723.1:ENST00000689871.1:ENST00000688504.1:ENST00000691964.1:ENST00000686375.1:ENST00000691733.1:ENST00000691705.1:ENST00000690209.1:ENST00000687864.1:ENST00000689819.1:ENST00000296266.7:ENST00000689492.1:ENST00000687398.1:ENST00000690663.1:ENST00000693588.1:ENST00000690677.1:ENST00000688664.1:ENST00000431818.8:ENST00000507564.5:ENST00000693233.1:ENST00000504021.6:ENST00000348417.7:ENST00000692901.1:ENST00000515783.6:ENST00000688020.1:ENST00000512220.5:ENST00000349441.6:ENST00000689005.1:ENST00000691641.1:ENST00000692321.1:ENST00000685087.1:ENST00000692728.1:ENST00000691360.1:ENST00000685189.1:ENST00000687766.1:ENST00000687845.1:ENST00000692508.1:ENST00000506507.5:ENST00000509815.1:ENST00000690617.1:ENST00000685811.1:ENST00000689384.1:ENST00000688392.1:ENST00000688266.1:ENST00000511498.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	100	2	1.96006	3.2244149999999996	4.48877	0.00725161	2.68161e-6	0.072984	0.00105178
chr17	82542169	82542269	6692829	0	+	0.52	(0.515,0.57]	chr17	654627	215	INTRON	INTRON	FOXK2	ENSG00000141568.21	ENST00000473637.6:ENST00000335255.10:ENST00000527313.6:ENST00000570585.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	31	2	2.03361	3.2242949999999997	4.41498	0.0325854	0.0106866	0.145164	0.0861859
chr21	33547813	33547910	7397474	0	+	0.484536	(0.476,0.515]	chr21	753513	9	INTRON	INTRON	SON	ENSG00000159140.22	ENST00000356577.10:ENST00000381692.6:ENST00000695559.1:ENST00000455528.5:ENST00000300278.8:ENST00000381679.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	60	2	2.80729	3.2242800000000003	3.64127	0.0126008	6.42302e-4	0.0980703	0.0231685
chr1	12170957	12171056	27829	0	+	0.414141	(0.408,0.44]	chr1	3320	34	INTRON	INTRON	TNFRSF1B	ENSG00000028137.19	ENST00000376259.7:ENST00000492361.1:ENST00000536782.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	34	2	1.93243	3.224235	4.51604	0.0441194	0.0137419	0.162255	0.0949306
chr1	92657321	92657421	506876	0	-	0.44	(0.408,0.44]	chr1	59811	206	INTRON	INTRON	EVI5	ENSG00000067208.16	ENST00000370331.5:ENST00000540033.2:ENST00000684568.2:ENST00000491940.5:ENST00000468580.5:ENST00000492613.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	34	2	1.93243	3.224235	4.51604	0.0441194	0.0137419	0.162255	0.0949306
chr12	24848688	24848787	5296900	0	-	0.414141	(0.408,0.44]	chr12	503847	61	INTRON	INTRON	BCAT1	ENSG00000060982.15	ENST00000261192.12:ENST00000538118.5:ENST00000342945.9:ENST00000539282.5:ENST00000539780.5:ENST00000544418.1:ENST00000612790.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:processed_transcript	2	34	2	1.93243	3.224235	4.51604	0.0441194	0.0137419	0.162255	0.0949306
chr22	41095488	41095587	7521522	0	+	0.424242	(0.408,0.44]	chr22	768515	20	INTRON	INTRON	EP300	ENSG00000100393.14	ENST00000263253.9:ENST00000674155.1	protein_coding	protein_coding	protein_coding	protein_coding	2	34	2	1.93243	3.224235	4.51604	0.0441194	0.0137419	0.162255	0.0949306
chr3	15734509	15734609	1623181	0	-	0.41	(0.408,0.44]	chr3	167981	96	INTRON	INTRON	ANKRD28	ENSG00000206560.12	ENST00000399451.6:ENST00000624145.3:ENST00000683139.1:ENST00000412318.5:ENST00000497037.5:ENST00000451422.1:ENST00000498524.5:ENST00000476472.5:ENST00000460278.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	34	2	1.93243	3.224235	4.51604	0.0441194	0.0137419	0.162255	0.0949306
chr6	35894962	35895060	3088563	0	-	0.418367	(0.408,0.44]	chr6	288887	36	INTRON	INTRON	SRPK1	ENSG00000096063.16	ENST00000373825.7:ENST00000423325.6:ENST00000346162.10:ENST00000361690.7:ENST00000510290.5:ENST00000373821.6:ENST00000508473.5:ENST00000512445.5:ENST00000513367.1:ENST00000507909.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	34	2	1.93243	3.224235	4.51604	0.0441194	0.0137419	0.162255	0.0949306
chr1	203741328	203741426	296651	0	+	0.5	(0.476,0.515]	chr1	34126	16	UTR3	UTR3:EXON_MRNA	ATP2B4	ENSG00000058668.15	ENST00000367218.7:ENST00000357681.10:ENST00000484746.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	34	2	1.91817	3.2242	4.53023	0.0459211	0.0119748	0.164984	0.0899583
chr12	50410505	50410605	5136429	0	+	0.51	(0.476,0.515]	chr12	484352	73	INTRON	INTRON	LARP4	ENSG00000161813.23	ENST00000550522.5:ENST00000293618.12:ENST00000429001.7:ENST00000398473.7:ENST00000548174.5:ENST00000548697.5:ENST00000548993.5:ENST00000522085.5:ENST00000518444.5:ENST00000551886.5:ENST00000523389.5:ENST00000518561.5:ENST00000347328.9:ENST00000550260.1:ENST00000517559.5:ENST00000552445.1	protein_coding	protein_coding	protein_coding	protein_coding	2	34	2	1.91817	3.2242	4.53023	0.0459211	0.0119748	0.164984	0.0899583
chr12	123401982	123402081	5242760	0	+	0.494949	(0.476,0.515]	chr12	498205	52	INTRON	INTRON	KMT5A	ENSG00000183955.14	ENST00000402868.8:ENST00000437519.5:ENST00000461103.5:ENST00000437502.1:ENST00000485469.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	34	2	1.91817	3.2242	4.53023	0.0459211	0.0119748	0.164984	0.0899583
chr13	52293137	52293236	5598510	0	-	0.494949	(0.476,0.515]	chr13	535227	12	INTRON	INTRON	TPTE2P2	ENSG00000272281.6	ENST00000605924.5:ENST00000403471.6	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	2	34	2	1.91817	3.2242	4.53023	0.0459211	0.0119748	0.164984	0.0899583
chr2	32440928	32441028	731630	0	+	0.48	(0.476,0.515]	chr2	84360	2	SS3_PROX	SS3_PROX:INTRON	BIRC6	ENSG00000115760.15	ENST00000421745.7:ENST00000648282.1:ENST00000444173.5:ENST00000431454.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	34	2	1.91817	3.2242	4.53023	0.0459211	0.0119748	0.164984	0.0899583
chr4	152529872	152529972	2275028	0	-	0.49	(0.476,0.515]	chr4	221124	401	INTRON	INTRON	FBXW7	ENSG00000109670.16	ENST00000281708.10:ENST00000603548.6:ENST00000604872.6:ENST00000647166.1:ENST00000643834.1:ENST00000642901.1	protein_coding	protein_coding	protein_coding	protein_coding	2	34	2	1.91817	3.2242	4.53023	0.0459211	0.0119748	0.164984	0.0899583
chr5	134778995	134779091	2490584	0	+	0.479167	(0.476,0.515]	chr5	237905	9	INTRON	INTRON	DDX46	ENSG00000145833.16	ENST00000628477.2:ENST00000452510.7:ENST00000507392.5:ENST00000354283.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	34	2	1.91817	3.2242	4.53023	0.0459211	0.0119748	0.164984	0.0899583
chr21	39271227	39271325	7465109	0	-	0.459184	(0.44,0.476]	chr21	760518	4	INTRON	INTRON	BRWD1	ENSG00000185658.14	ENST00000333229.6:ENST00000342449.8:ENST00000380800.7:ENST00000430093.5:ENST00000445245.5:ENST00000445668.5:ENST00000412604.1:ENST00000455867.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	35	2	2.21079	3.22417	4.23755	0.0263357	0.0194581	0.122221	0.119831
chr2	38337085	38337185	1098940	0	-	0.33	(0.32,0.35]	chr2	117856	177	INTRON	INTRON	ATL2	ENSG00000119787.14	ENST00000378954.9:ENST00000406122.5:ENST00000405384.6:ENST00000402054.5:ENST00000419554.6:ENST00000651368.1:ENST00000452935.6:ENST00000449130.5:ENST00000443098.5:ENST00000456736.5:ENST00000474535.2:ENST00000472097.1:ENST00000451483.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	91	2	3.03597	3.224145	3.41232	0.00832487	1.30505e-4	0.0774402	0.00983066
chr19	54457333	54457421	7099424	0	+	0.522727	(0.515,0.57]	chr19	712018	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	LENG8	ENSG00000167615.17	ENST00000616932.4:ENST00000326764.10:ENST00000376514.6:ENST00000610347.1	protein_coding	protein_coding	protein_coding	protein_coding	6	124	2	3.12091	3.22411	3.32731	1.0674e-4	2.16537e-5	0.00924854	0.00361845
chr16	4806702	4806801	6438597	0	-	0.292929	(0.28,0.32]	chr16	620136	10	INTRON	INTRON	GLYR1	ENSG00000140632.17	ENST00000321919.14:ENST00000436648.9:ENST00000588732.5:ENST00000589389.5:ENST00000587936.5:ENST00000591451.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	44	2	1.76293	3.2241	4.68527	0.0766478	0.00819419	0.196164	0.0810802
chr18	23337450	23337550	6957093	0	-	0.3	(0.28,0.32]	chr18	688159	60	INTRON	INTRON	TMEM241	ENSG00000134490.14	ENST00000581444.5:ENST00000383233.8:ENST00000473688.5:ENST00000477053.5:ENST00000583048.5:ENST00000460322.5:ENST00000542162.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	44	2	1.76293	3.2241	4.68527	0.0766478	0.00819419	0.196164	0.0810802
chr19	11106687	11106787	7016993	0	+	0.56	(0.515,0.57]	chr19	697443	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	LDLR	ENSG00000130164.14	ENST00000557933.5:ENST00000558518.6:ENST00000545707.5:ENST00000535915.5:ENST00000455727.6:ENST00000558013.5:ENST00000252444.9:ENST00000560467.1:ENST00000558528.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	53	2	2.74772	3.22401	3.7003	0.0142192	3.73715e-4	0.103638	0.0179087
chr12	110380951	110381051	5408960	0	-	0.44	(0.408,0.44]	chr12	516421	19	INTRON	INTRON	ANAPC7	ENSG00000196510.14	ENST00000455511.9:ENST00000552087.1:ENST00000450008.3:ENST00000471602.6:ENST00000548234.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	59	2	2.96007	3.224	3.48793	0.00753901	0.00130904	0.0773151	0.0331539
chr1	112929616	112929698	523877	0	-	0.390244	(0.378,0.408]	chr1	61685	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SLC16A1	ENSG00000155380.13	ENST00000679803.1:ENST00000369626.8:ENST00000443580.6:ENST00000538576.5:ENST00000429288.2:ENST00000458229.6:ENST00000679846.1:ENST00000478835.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	26	2	2.45932	3.223995	3.98867	0.0507	0.0346754	0.156383	0.148144
chr11	5374491	5374591	4896964	0	-	0.38	(0.378,0.408]	chr11	459187	272	INTRON	INTRON	HBG2:ENSG00000239920:HBE1:OR51B5	ENSG00000196565.15:ENSG00000239920.2:ENSG00000213931.7:ENSG00000167355.8	ENST00000380252.6:ENST00000380259.7:ENST00000292896.3:ENST00000380237.5:ENST00000420726.6:ENST00000420465.6:ENST00000415970.6:ENST00000418729.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:nonsense_mediated_decay:processed_transcript	1	26	2	2.45932	3.223995	3.98867	0.0507	0.0346754	0.156383	0.148144
chr13	100244595	100244695	5529104	0	+	0.4	(0.378,0.408]	chr13	528508	72	INTRON	INTRON	PCCA	ENSG00000175198.17	ENST00000376286.8:ENST00000376279.7:ENST00000376285.6:ENST00000647303.1:ENST00000637657.1:ENST00000636366.1:ENST00000636475.1:ENST00000636420.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	26	2	2.45932	3.223995	3.98867	0.0507	0.0346754	0.156383	0.148144
chr15	72583491	72583591	6060271	0	+	0.39	(0.378,0.408]	chr15	576935	3	UTR3	UTR3:EXON_MRNA	ARIH1	ENSG00000166233.15	ENST00000379887.9:ENST00000562891.2:ENST00000563310.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	26	2	2.45932	3.223995	3.98867	0.0507	0.0346754	0.156383	0.148144
chr15	92932561	92932660	6104020	0	+	0.393939	(0.378,0.408]	chr15	581428	31	INTRON	INTRON	ENSG00000279765:CHD2	ENSG00000279765.3:ENSG00000173575.22	ENST00000630790.1:ENST00000626874.2:ENST00000394196.9:ENST00000635856.1:ENST00000420239.7:ENST00000628375.2:ENST00000625990.3:ENST00000626782.2:ENST00000629136.1:ENST00000637572.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	26	2	2.45932	3.223995	3.98867	0.0507	0.0346754	0.156383	0.148144
chr16	24018851	24018951	6325591	0	+	0.39	(0.378,0.408]	chr16	605711	299	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000498739.1:ENST00000647422.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	26	2	2.45932	3.223995	3.98867	0.0507	0.0346754	0.156383	0.148144
chr19	49206921	49207020	7089550	0	+	0.383838	(0.378,0.408]	chr19	709849	44	INTRON	INTRON	TRPM4	ENSG00000130529.16	ENST00000598697.5:ENST00000252826.10:ENST00000595519.5:ENST00000427978.6:ENST00000598502.5:ENST00000596338.5:ENST00000595071.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	26	2	2.45932	3.223995	3.98867	0.0507	0.0346754	0.156383	0.148144
chr2	47830250	47830350	1115347	0	-	0.38	(0.378,0.408]	chr2	119643	65	INTRON	INTRON	FBXO11	ENSG00000138081.22	ENST00000684712.1:ENST00000682451.1:ENST00000403359.8:ENST00000402508.5:ENST00000683894.1:ENST00000681999.1:ENST00000682975.1:ENST00000684085.1:ENST00000493962.6:ENST00000492225.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	26	2	2.45932	3.223995	3.98867	0.0507	0.0346754	0.156383	0.148144
chr3	184847880	184847979	1583134	0	+	0.383838	(0.378,0.408]	chr3	163848	43	INTRON	INTRON	VPS8	ENSG00000156931.16	ENST00000287546.8:ENST00000625842.3:ENST00000436792.6:ENST00000446204.6:ENST00000422105.5:ENST00000452666.3:ENST00000469479.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	26	2	2.45932	3.223995	3.98867	0.0507	0.0346754	0.156383	0.148144
chr4	1847129	1847223	2095677	0	-	0.382979	(0.378,0.408]	chr4	207338	1	INTRON	INTRON	LETM1	ENSG00000168924.15	ENST00000302787.3:ENST00000466175.5:ENST00000512189.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	26	2	2.45932	3.223995	3.98867	0.0507	0.0346754	0.156383	0.148144
chr4	2598425	2598524	1913136	0	+	0.383838	(0.378,0.408]	chr4	191983	17	INTRON	INTRON	RNF4:FAM193A	ENSG00000063978.16:ENSG00000125386.16	ENST00000508235.1:ENST00000637812.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	26	2	2.45932	3.223995	3.98867	0.0507	0.0346754	0.156383	0.148144
chr8	98720873	98720973	3999110	0	-	0.38	(0.378,0.408]	chr8	366081	4	SS5_PROX	SS5_PROX:INTRON	STK3	ENSG00000104375.17	ENST00000617590.1:ENST00000419617.7:ENST00000523601.5:ENST00000518165.5:ENST00000521649.5:ENST00000424861.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	26	2	2.45932	3.223995	3.98867	0.0507	0.0346754	0.156383	0.148144
chrX	123630992	123631089	7878010	0	-	0.402062	(0.378,0.408]	chrX	802471	27	INTRON	INTRON	THOC2	ENSG00000125676.20	ENST00000245838.13:ENST00000355725.8:ENST00000491737.5	protein_coding	protein_coding	protein_coding	protein_coding	1	26	2	2.45932	3.223995	3.98867	0.0507	0.0346754	0.156383	0.148144
chr12	53188086	53188186	5141895	0	+	0.46	(0.44,0.476]	chr12	485094	6	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ZNF740	ENSG00000139651.11	ENST00000416904.5:ENST00000551514.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	45	2	1.66462	3.2237750000000003	4.78293	0.0520247	0.00292033	0.159508	0.0494641
chr16	81524786	81524886	6405799	0	+	0.46	(0.44,0.476]	chr16	615031	289	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6	protein_coding	protein_coding	protein_coding	protein_coding	3	45	2	1.66462	3.2237750000000003	4.78293	0.0520247	0.00292033	0.159508	0.0494641
chr12	56666366	56666466	5335855	0	-	0.27	[0,0.28]	chr12	510167	1	SS3_PROX	SS3_PROX:INTRON	PTGES3	ENSG00000110958.16	ENST00000537473.2:ENST00000614328.4:ENST00000262033.11:ENST00000414274.7:ENST00000436399.6:ENST00000448157.6:ENST00000456859.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	52	2	1.62313	3.2237299999999998	4.82433	0.0605286	0.0200334	0.191883	0.109608
chr6	126001299	126001398	2956210	0	+	0.272727	[0,0.28]	chr6	278005	13	INTRON	INTRON	TRMT11	ENSG00000066651.20	ENST00000479748.5:ENST00000368332.7:ENST00000461129.5:ENST00000648977.1:ENST00000468097.5:ENST00000334379.11	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	52	2	1.62313	3.2237299999999998	4.82433	0.0605286	0.0200334	0.191883	0.109608
chr7	119839544	119839644	3629736	0	-	0.26	[0,0.28]	chr7	337335	383	INTRON	INTRON	LINC02476	ENSG00000225546.6	ENST00000660268.1:ENST00000431071.5:ENST00000426413.2	lncRNA	lncRNA	lncRNA	lncRNA	3	52	2	1.62313	3.2237299999999998	4.82433	0.0605286	0.0200334	0.191883	0.109608
chr2	159720446	159720545	899564	0	+	0.343434	(0.32,0.35]	chr2	99520	43	INTRON	INTRON	MARCHF7	ENSG00000136536.15	ENST00000539065.5:ENST00000259050.8:ENST00000409175.6:ENST00000421037.1:ENST00000473749.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	38	2	2.07985	3.2237	4.36755	0.0303092	0.0300552	0.143025	0.129138
chr4	48502133	48502233	2136757	0	-	0.33	(0.32,0.35]	chr4	210630	4	SS3_PROX	SS3_PROX:INTRON	FRYL	ENSG00000075539.15	ENST00000358350.9:ENST00000507873.7:ENST00000503339.5:ENST00000503238.6:ENST00000641795.1:ENST00000512810.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	38	2	2.07985	3.2237	4.36755	0.0303092	0.0300552	0.143025	0.129138
chr5	132885714	132885809	2724461	0	-	0.336842	(0.32,0.35]	chr5	256242	2	INTRON	INTRON	AFF4	ENSG00000072364.13	ENST00000265343.10	protein_coding	protein_coding	protein_coding	protein_coding	2	38	2	2.07985	3.2237	4.36755	0.0303092	0.0300552	0.143025	0.129138
chr5	137994506	137994606	2730410	0	-	0.33	(0.32,0.35]	chr5	256973	58	INTRON	INTRON	FAM13B	ENSG00000031003.11	ENST00000689681.1:ENST00000033079.7:ENST00000425075.6:ENST00000420893.6	protein_coding	protein_coding	protein_coding	protein_coding	2	38	2	2.07985	3.2237	4.36755	0.0303092	0.0300552	0.143025	0.129138
chr10	909205	909305	4542362	0	-	0.58	(0.57,1]	chr10	419304	58	INTRON	INTRON	LARP4B	ENSG00000107929.16	ENST00000316157.8:ENST00000690516.1:ENST00000476529.5:ENST00000406525.6:ENST00000481118.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	12	143	2	3.19401	3.223665	3.25332	9.56553e-7	4.99028e-7	6.06868e-4	3.78502e-4
chr16	67139284	67139383	6366577	0	+	0.363636	(0.35,0.378]	chr16	611493	31	INTRON	INTRON	PHAF1	ENSG00000125149.12	ENST00000219139.8:ENST00000563853.6:ENST00000569914.5:ENST00000569600.5	protein_coding	protein_coding	protein_coding	protein_coding	3	43	2	1.58862	3.2236599999999997	4.8587	0.0615516	0.00695662	0.193423	0.0718189
chr18	3433227	3433326	6866926	0	+	0.565657	(0.515,0.57]	chr18	680308	145	INTRON	INTRON	TGIF1	ENSG00000177426.22	ENST00000552383.5:ENST00000401449.5:ENST00000550958.5:ENST00000548489.6	protein_coding	protein_coding	protein_coding	protein_coding	2	49	2	3.19178	3.223625	3.25547	0.00289534	0.00261721	0.0494641	0.0455413
chr20	49688386	49688486	7353373	0	-	0.52	(0.515,0.57]	chr20	749846	313	INTRON	INTRON	B4GALT5	ENSG00000158470.5	ENST00000371711.4	protein_coding	protein_coding	protein_coding	protein_coding	2	49	2	3.19178	3.223625	3.25547	0.00289534	0.00261721	0.0494641	0.0455413
chr15	27153079	27153179	5983974	0	+	0.58	(0.57,1]	chr15	569164	1259	INTRON	INTRON	GABRG3	ENSG00000182256.13	ENST00000615808.5:ENST00000555083.5	protein_coding	protein_coding	protein_coding	protein_coding	2	23	2	2.13445	3.2236100000000003	4.31277	0.0241482	0.00346264	0.12011	0.0539802
chr3	47695992	47696092	1684206	0	-	0.6	(0.57,1]	chr3	172058	23	INTRON	INTRON	SMARCC1	ENSG00000173473.11	ENST00000254480.10:ENST00000425518.5:ENST00000462198.5:ENST00000485737.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	23	2	2.13445	3.2236100000000003	4.31277	0.0241482	0.00346264	0.12011	0.0539802
chr3	196568238	196568338	1900187	0	-	0.58	(0.57,1]	chr3	190296	4	SS5_PROX	SS5_PROX:INTRON	WDR53	ENSG00000185798.8	ENST00000332629.7:ENST00000429115.1:ENST00000433160.1:ENST00000425888.1	protein_coding	protein_coding	protein_coding	protein_coding	2	23	2	2.13445	3.2236100000000003	4.31277	0.0241482	0.00346264	0.12011	0.0539802
chr13	20071241	20071341	5453585	0	+	0.35	(0.32,0.35]	chr13	522569	30	INTRON	INTRON	ZMYM2	ENSG00000121741.17	ENST00000382874.6:ENST00000610343.5:ENST00000382871.3:ENST00000382883.7:ENST00000382870.7:ENST00000494061.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	87	2	3.02686	3.22356	3.42026	0.00219805	8.86699e-4	0.0417893	0.0271952
chr7	65975753	65975851	3538159	0	-	0.571429	(0.57,1]	chr7	330015	8	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	GUSB	ENSG00000169919.17	ENST00000304895.9:ENST00000466883.5:ENST00000430730.5:ENST00000447929.5:ENST00000421103.5:ENST00000465785.5:ENST00000479038.1:ENST00000475316.5:ENST00000476486.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	64	2	2.55904	3.22355	3.88806	2.5313e-4	6.56297e-5	0.0147438	0.0067007
chr7	156856679	156856779	3687653	0	-	0.31	(0.28,0.32]	chr7	342096	194	INTRON	INTRON	LMBR1	ENSG00000105983.23	ENST00000353442.10:ENST00000415428.5:ENST00000454132.5:ENST00000434503.5:ENST00000430278.5:ENST00000434278.5:ENST00000444719.5:ENST00000461469.5:ENST00000414218.1:ENST00000434453.1:ENST00000498034.5:ENST00000433968.5:ENST00000485985.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	72	2	2.73077	3.223465	3.71616	0.0220748	4.76221e-4	0.115395	0.0197443
chr18	36033207	36033307	6963199	0	-	0.52	(0.515,0.57]	chr18	689064	1	SS5_PROX	SS5_PROX:INTRON	RPRD1A	ENSG00000141425.18	ENST00000399022.9:ENST00000590898.5:ENST00000357384.8:ENST00000588737.5:ENST00000589050.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay	2	33	2	1.9459	3.2234599999999998	4.50102	0.0429089	0.00510768	0.148082	0.0646039
chr19	23769127	23769227	7042490	0	+	0.55	(0.515,0.57]	chr19	702194	56	INTRON	INTRON	RPSAP58	ENSG00000288920.1	ENST00000471224.5:ENST00000692590.1:ENST00000475499.2:ENST00000686829.1:ENST00000689525.1:ENST00000691397.1:ENST00000688405.1:ENST00000692739.1:ENST00000687994.1:ENST00000484897.4:ENST00000685013.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	33	2	1.9459	3.2234599999999998	4.50102	0.0429089	0.00510768	0.148082	0.0646039
chr10	60789914	60790012	4435888	0	+	0.336735	(0.32,0.35]	chr10	409191	13	INTRON	INTRON	CDK1	ENSG00000170312.17	ENST00000519078.6:ENST00000316629.8:ENST00000395284.8:ENST00000448257.6:ENST00000373809.2:ENST00000487784.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	53	2	1.68188	3.223445	4.76501	0.031521	0.0114287	0.144381	0.0886611
chr15	55288150	55288250	6180890	0	-	0.31	(0.28,0.32]	chr15	589167	174	INTRON	INTRON	RAB27A	ENSG00000069974.16	ENST00000336787.6:ENST00000563262.5:ENST00000567639.1:ENST00000565776.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	56	2	1.64429	3.22342	4.80255	0.0365539	0.0137406	0.153932	0.0949306
chr2	183014387	183014487	1285789	0	-	0.31	(0.28,0.32]	chr2	135424	107	INTRON	INTRON	NCKAP1	ENSG00000061676.15	ENST00000361354.9:ENST00000360982.2	protein_coding	protein_coding	protein_coding	protein_coding	4	56	2	1.64429	3.22342	4.80255	0.0365539	0.0137406	0.153932	0.0949306
chr11	118496898	118496992	4872754	0	+	0.297872	(0.28,0.32]	chr11	455091	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	KMT2A	ENSG00000118058.24	ENST00000389506.10:ENST00000534358.8:ENST00000691053.1:ENST00000649699.1:ENST00000528278.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	114	2	2.84107	3.223375	3.60568	0.00127168	6.40806e-4	0.032635	0.0228915
chr2	65115699	65115799	1142818	0	-	0.27	[0,0.28]	chr2	122186	105	INTRON	INTRON	RAB1A	ENSG00000138069.18	ENST00000649427.1:ENST00000494188.1:ENST00000409784.8:ENST00000409892.5:ENST00000409751.1:ENST00000398529.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	46	2	2.24546	3.22326	4.20106	0.0695895	0.0206502	0.184298	0.122348
chr4	138206400	138206500	2245468	0	-	0.26	[0,0.28]	chr4	219484	208	INTRON	INTRON	SLC7A11	ENSG00000151012.13	ENST00000280612.9:ENST00000509248.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	46	2	2.24546	3.22326	4.20106	0.0695895	0.0206502	0.184298	0.122348
chr4	138206999	138207098	2245474	0	-	0.272727	[0,0.28]	chr4	219484	214	INTRON	INTRON	SLC7A11	ENSG00000151012.13	ENST00000280612.9:ENST00000509248.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	46	2	2.24546	3.22326	4.20106	0.0695895	0.0206502	0.184298	0.122348
chr19	15325236	15325336	7147333	0	-	0.5	(0.476,0.515]	chr19	721965	449	INTRON	INTRON	BRD4	ENSG00000141867.19	ENST00000679869.1:ENST00000360016.9:ENST00000594841.5:ENST00000597315.5:ENST00000601941.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	56	2	2.99852	3.22318	3.44784	0.0077575	0.00113238	0.0757402	0.0308465
chr16	89336972	89337072	6542044	0	-	0.42	(0.408,0.44]	chr16	634207	81	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000647238.1:ENST00000566858.5:ENST00000644045.1:ENST00000643147.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	45	2	1.58763	3.223175	4.85872	0.0639217	0.00221911	0.177824	0.0435144
chr15	83043119	83043219	6249197	0	-	0.42	(0.408,0.44]	chr15	596405	8	INTRON	INTRON	BTBD1	ENSG00000064726.10	ENST00000261721.9:ENST00000379403.2:ENST00000559652.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	76	2	2.78289	3.222995	3.6631	0.0022785	6.21419e-4	0.0437013	0.0229151
chr9	19084041	19084140	4236408	0	-	0.282828	(0.28,0.32]	chr9	389400	6	INTRON	INTRON	HAUS6	ENSG00000147874.11	ENST00000380502.8:ENST00000380496.5	protein_coding	protein_coding	protein_coding	protein_coding	3	56	2	1.76048	3.222875	4.68527	0.0450149	0.00819419	0.149888	0.0810802
chr13	110982594	110982692	5544215	0	+	0.530612	(0.515,0.57]	chr13	529721	53	INTRON	INTRON	LINC00431	ENSG00000225760.2	ENST00000440735.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	3	69	2	3.19161	3.2228649999999996	3.25412	0.00224554	3.49295e-4	0.0435144	0.017404
chr21	46267510	46267602	7471240	0	-	0.380435	(0.378,0.408]	chr21	761660	5	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	MCM3AP	ENSG00000160294.11	ENST00000397708.1:ENST00000291688.6:ENST00000486937.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	12	290	2	3.08435	3.2228149999999998	3.36128	1.91842e-5	1.05091e-6	0.00355195	5.87735e-4
chr7	86939509	86939609	3564219	0	-	0.49	(0.476,0.515]	chr7	332156	1	SS5_PROX	SS5_PROX:INTRON	ELAPOR2	ENSG00000164659.15	ENST00000450689.7:ENST00000444627.5:ENST00000394714.6:ENST00000416314.5:ENST00000423294.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	42	2	1.91525	3.22274	4.53023	0.0232571	0.0119748	0.127416	0.0899583
chr12	110302128	110302227	5226311	0	+	0.343434	(0.32,0.35]	chr12	495250	50	INTRON	INTRON	ATP2A2	ENSG00000174437.18	ENST00000308664.10:ENST00000539276.7:ENST00000377685.9:ENST00000548169.2:ENST00000550248.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	52	2	1.54741	3.222545	4.89768	0.0473733	0.00793135	0.169265	0.076155
chr4	73106850	73106949	2159280	0	-	0.353535	(0.35,0.378]	chr4	212662	29	INTRON	INTRON	ANKRD17	ENSG00000132466.20	ENST00000358602.9:ENST00000558247.5:ENST00000330838.10:ENST00000509867.6:ENST00000561029.1	protein_coding	protein_coding	protein_coding	protein_coding	3	82	2	3.14947	3.222385	3.2953	0.0031465	4.50721e-4	0.0500431	0.0192381
chr17	7484664	7484764	6553313	0	+	0.7	(0.57,1]	chr17	636525	4	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	POLR2A	ENSG00000181222.19	ENST00000617998.6:ENST00000674977.2:ENST00000572844.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	12	141	2	3.06658	3.2223699999999997	3.37816	1.11424e-6	5.48017e-7	6.05355e-4	4.34551e-4
chr7	148820475	148820573	3670114	0	-	0.255102	[0,0.28]	chr7	340579	9	EXON_MRNA	EXON_MRNA:INTRON	EZH2	ENSG00000106462.12	ENST00000683292.1:ENST00000320356.7:ENST00000492143.5:ENST00000478654.5:ENST00000350995.6:ENST00000460911.5:ENST00000683744.1:ENST00000684510.1:ENST00000682317.1:ENST00000682263.1:ENST00000684300.1:ENST00000476773.5:ENST00000483967.5:ENST00000498186.5:ENST00000483012.1:ENST00000682401.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	345	2	3.02395	3.2223550000000003	3.42076	3.16774e-4	3.40726e-6	0.016426	0.00120209
chr2	174362433	174362533	1271012	0	-	0.25	[0,0.28]	chr2	134338	35	INTRON	INTRON	CIR1	ENSG00000138433.16	ENST00000342016.8:ENST00000377973.4	protein_coding	protein_coding	protein_coding	protein_coding	2	43	2	1.8986	3.22235	4.5461	0.0531512	0.0365918	0.179787	0.138959
chr6	107910002	107910096	3182357	0	-	0.223404	[0,0.28]	chr6	296428	6	INTRON	INTRON	SEC63	ENSG00000025796.14	ENST00000369002.9:ENST00000429168.1	protein_coding	protein_coding	protein_coding	protein_coding	2	43	2	1.8986	3.22235	4.5461	0.0531512	0.0365918	0.179787	0.138959
chr7	124914473	124914573	3633623	0	-	0.36	(0.35,0.378]	chr7	337728	157	INTRON	INTRON	POT1	ENSG00000128513.16	ENST00000430927.6:ENST00000357628.8:ENST00000393329.5:ENST00000653274.1:ENST00000661898.1:ENST00000664330.1:ENST00000657892.1:ENST00000662531.1:ENST00000653241.1:ENST00000653892.1:ENST00000664366.1:ENST00000655761.1:ENST00000668382.1:ENST00000654766.1:ENST00000657333.1:ENST00000653819.1:ENST00000609106.5:ENST00000446993.6:ENST00000429326.6:ENST00000609702.5:ENST00000669195.1:ENST00000608437.5:ENST00000608261.5:ENST00000461288.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	64	2	2.60341	3.222305	3.8412	0.0275785	1.97447e-4	0.123904	0.0122531
chr6	169667782	169667881	3266777	0	-	0.575758	(0.57,1]	chr6	303226	7	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	WDR27	ENSG00000184465.16	ENST00000448612.6:ENST00000648472.1:ENST00000423258.5:ENST00000647790.1:ENST00000647873.1:ENST00000649303.1:ENST00000647889.1:ENST00000648017.1:ENST00000496752.1:ENST00000650296.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	87	2	2.93514	3.22213	3.50912	5.35006e-5	3.63837e-6	0.00598316	0.00136117
chr20	57403456	57403555	7288893	0	+	0.59596	(0.57,1]	chr20	741612	31	INTRON	INTRON	RBM38	ENSG00000132819.17	ENST00000356208.10:ENST00000440234.6:ENST00000342690.4:ENST00000344785.10:ENST00000371219.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	50	2	2.23972	3.22173	4.20374	0.00670296	8.34216e-6	0.0707084	0.00208368
chr12	116100244	116100343	5423770	0	-	0.424242	(0.408,0.44]	chr12	518251	31	INTRON	INTRON	MED13L	ENSG00000123066.9	ENST00000281928.9:ENST00000650226.1:ENST00000548743.2:ENST00000647567.1	protein_coding	protein_coding	protein_coding	protein_coding	2	35	2	2.21238	3.2216699999999996	4.23096	0.0278028	0.0193525	0.123904	0.119831
chr3	196500373	196500473	1899989	0	-	0.42	(0.408,0.44]	chr3	190261	113	INTRON	INTRON	RNF168	ENSG00000163961.4	ENST00000318037.3:ENST00000437070.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	35	2	2.21238	3.2216699999999996	4.23096	0.0278028	0.0193525	0.123904	0.119831
chr16	18131963	18132063	6453953	0	-	0.43	(0.408,0.44]	chr16	621960	1282	INTRON	INTRON	ENSG00000259929:ENSG00000260242	ENSG00000259929.5:ENSG00000260242.1	ENST00000567304.1:ENST00000563866.1	lncRNA	lncRNA	lncRNA	lncRNA	4	92	2	2.54014	3.221625	3.90311	0.00255945	1.24325e-4	0.0450085	0.00952291
chr14	30946789	30946889	5857073	0	-	0.51	(0.476,0.515]	chr14	556482	3	SS5_PROX	SS5_PROX:INTRON	STRN3	ENSG00000196792.12	ENST00000355683.9:ENST00000357479.10:ENST00000555358.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	35	2	2.19809	3.2215499999999997	4.24501	0.0247713	0.020317	0.121522	0.12011
chr7	132853566	132853666	3643596	0	-	0.42	(0.408,0.44]	chr7	338836	147	INTRON	INTRON	CHCHD3	ENSG00000106554.13	ENST00000262570.10:ENST00000448878.6:ENST00000496427.5:ENST00000423635.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	40	2	2.21857	3.22152	4.22447	0.0209591	0.0161655	0.112046	0.109464
chr3	142562918	142563013	1838831	0	-	0.305263	(0.28,0.32]	chr3	184954	7	CDS	CDS:EXON_MRNA:INTRON	ATR	ENSG00000175054.16	ENST00000350721.9:ENST00000661310.1:ENST00000653868.1:ENST00000515149.3:ENST00000659195.1:ENST00000657914.1:ENST00000507148.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	71	2	3.17453	3.221515	3.2685	0.00432734	0.00429297	0.0599065	0.0579331
chr19	47111647	47111747	7196093	0	-	0.51	(0.476,0.515]	chr19	729137	1	SS5_PROX	SS5_PROX:INTRON	ZC3H4	ENSG00000130749.10	ENST00000253048.10:ENST00000594019.5:ENST00000597069.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	83	2	2.26034	3.2215	4.18266	0.0166235	4.55166e-5	0.110511	0.00583644
chr4	70948420	70948519	1970967	0	+	0.383838	(0.378,0.408]	chr4	197577	52	INTRON	INTRON	MOB1B	ENSG00000173542.9	ENST00000502869.5:ENST00000509041.5:ENST00000309395.7:ENST00000396051.2:ENST00000511449.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	48	2	1.5653	3.22146	4.87762	0.043739	0.00553849	0.162255	0.0648867
chr7	127663848	127663948	3402508	0	+	0.4	(0.378,0.408]	chr7	318063	110	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000463020.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	48	2	1.5653	3.22146	4.87762	0.043739	0.00553849	0.162255	0.0648867
chr16	2935266	2935363	6280667	0	+	0.56701	(0.515,0.57]	chr16	600969	5	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	FLYWCH1	ENSG00000059122.17	ENST00000253928.14:ENST00000416288.6:ENST00000573564.5:ENST00000344592.9:ENST00000571580.1:ENST00000575604.1:ENST00000570752.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	35	2	2.27238	3.221375	4.17037	0.0161808	0.0139194	0.10247	0.101453
chr9	137067454	137067551	4375570	0	-	0.536082	(0.515,0.57]	chr9	403250	7	INTRON	INTRON	SAPCD2	ENSG00000186193.9	ENST00000409687.5	protein_coding	protein_coding	protein_coding	protein_coding	2	35	2	2.27238	3.221375	4.17037	0.0161808	0.0139194	0.10247	0.101453
chr9	125348192	125348291	4199145	0	+	0.474747	(0.44,0.476]	chr9	383269	8	INTRON	INTRON	GAPVD1	ENSG00000165219.23	ENST00000297933.11:ENST00000470056.5:ENST00000394105.6:ENST00000394083.6:ENST00000495955.5:ENST00000394104.6:ENST00000312123.13:ENST00000474637.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	76	2	2.47339	3.221325	3.96926	0.0090196	8.75142e-5	0.080367	0.00785215
chr11	4046022	4046121	4725375	0	+	0.464646	(0.44,0.476]	chr11	437170	217	INTRON	INTRON	STIM1	ENSG00000167323.12	ENST00000525403.5:ENST00000526596.2:ENST00000300737.8:ENST00000616714.4:ENST00000527651.5:ENST00000532610.5:ENST00000532919.5:ENST00000530554.5:ENST00000528656.5:ENST00000525055.5:ENST00000532990.1:ENST00000526771.5:ENST00000527484.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	29	2	2.60774	3.22107	3.8344	0.041276	0.0255874	0.161534	0.120269
chr17	30753004	30753103	6590018	0	+	0.444444	(0.44,0.476]	chr17	640860	93	INTRON	INTRON	SUZ12P1	ENSG00000264538.7	ENST00000578070.5:ENST00000579526.5:ENST00000690405.1:ENST00000497969.6:ENST00000578195.6:ENST00000582557.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	1	29	2	2.60774	3.22107	3.8344	0.041276	0.0255874	0.161534	0.120269
chr3	58322901	58323001	1439900	0	+	0.46	(0.44,0.476]	chr3	152190	49	UTR3	UTR3:EXON_MRNA	RPP14	ENSG00000163684.12	ENST00000445193.7	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	2.60774	3.22107	3.8344	0.041276	0.0255874	0.161534	0.120269
chr9	137257454	137257554	4223125	0	+	0.45	(0.44,0.476]	chr9	388056	4	SS5_PROX	SS5_PROX:INTRON	NELFB	ENSG00000188986.9	ENST00000343053.6	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	2.60774	3.22107	3.8344	0.041276	0.0255874	0.161534	0.120269
chr16	90137916	90137993	6424254	0	+	0.441558	(0.44,0.476]	chr16	617208	4	EXON_LNCRNA	EXON_LNCRNA:INTRON	FAM157C	ENSG00000260528.6	ENST00000563357.1:ENST00000568070.1	lncRNA	lncRNA	lncRNA	lncRNA	10	241	2	3.01346	3.221015	3.42857	2.39772e-5	3.37971e-6	0.00383194	0.00130839
chr17	22175642	22175742	6579420	0	+	0.47	(0.44,0.476]	chr17	639556	844	INTRON	INTRON	UBBP4	ENSG00000263563.7	ENST00000648259.1:ENST00000688301.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	3	41	2	1.75627	3.220955	4.68564	0.0380723	0.00816201	0.157702	0.0766625
chr8	129566426	129566526	4060951	0	-	0.47	(0.44,0.476]	chr8	369672	93	INTRON	INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1:ENST00000676273.1:ENST00000667643.1:ENST00000668791.1:ENST00000663716.1:ENST00000663572.1:ENST00000676148.1:ENST00000667962.1:ENST00000674877.1:ENST00000675316.1:ENST00000674656.1:ENST00000446592.7:ENST00000667341.1:ENST00000675186.1:ENST00000652971.1:ENST00000661447.1:ENST00000674863.1:ENST00000675498.1:ENST00000675527.1:ENST00000676108.1:ENST00000657647.1:ENST00000675589.1:ENST00000675913.1:ENST00000675109.1:ENST00000671632.1:ENST00000671311.1:ENST00000676099.1:ENST00000660652.1:ENST00000675522.1:ENST00000675044.1:ENST00000675435.1:ENST00000674639.1:ENST00000676069.1:ENST00000675532.1:ENST00000674762.1:ENST00000523151.6:ENST00000675948.1:ENST00000665364.1:ENST00000657251.1:ENST00000675166.1:ENST00000674883.1:ENST00000675867.1:ENST00000674580.1:ENST00000675393.1:ENST00000520048.1:ENST00000674906.1:ENST00000676030.1:ENST00000670588.1:ENST00000675072.1:ENST00000664936.1:ENST00000652914.1:ENST00000657069.1:ENST00000674882.1	lncRNA	lncRNA	lncRNA	lncRNA	3	41	2	1.75627	3.220955	4.68564	0.0380723	0.00816201	0.157702	0.0766625
chr9	121181296	121181395	4336201	0	-	0.454545	(0.44,0.476]	chr9	398423	33	UTR3	UTR3:EXON_MRNA	RAB14	ENSG00000119396.11	ENST00000373840.9	protein_coding	protein_coding	protein_coding	protein_coding	3	41	2	1.75627	3.220955	4.68564	0.0380723	0.00816201	0.157702	0.0766625
chr3	143043776	143043875	1529530	0	+	0.555556	(0.515,0.57]	chr3	159459	1	INTRON	INTRON	U2SURP	ENSG00000163714.18	ENST00000488497.7:ENST00000473835.7:ENST00000493598.6:ENST00000463563.6:ENST00000480029.5:ENST00000467348.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	89	2	2.31394	3.22089	4.12784	0.00231716	4.0232e-5	0.0442594	0.00539487
chr2	53870106	53870201	1119514	0	-	0.210526	[0,0.28]	chr2	119864	7	EXON_MRNA	EXON_MRNA:INTRON	PSME4	ENSG00000068878.15	ENST00000404125.6:ENST00000389993.7:ENST00000476586.5:ENST00000488687.5:ENST00000466539.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	44	2	2.05756	3.220715	4.38387	0.0501911	0.0352544	0.156383	0.150301
chr1	16633846	16633943	383718	0	-	0.360825	(0.35,0.378]	chr1	45220	1	INTRON	INTRON	CROCCP2	ENSG00000215908.10	ENST00000639456.1:ENST00000412962.4:ENST00000635081.1:ENST00000362058.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	3	44	2	1.87586	3.22068	4.5655	0.0268864	0.0155464	0.135275	0.100909
chr1	8874639	8874723	374263	0	-	0.464286	(0.44,0.476]	chr1	43643	3	SS5_PROX	SS5_PROX:INTRON	ENO1	ENSG00000074800.16	ENST00000234590.10:ENST00000647408.1:ENST00000646370.2:ENST00000645609.1:ENST00000497492.1:ENST00000646660.1:ENST00000646680.1:ENST00000646906.1:ENST00000646156.1:ENST00000643438.1:ENST00000489867.2:ENST00000486051.5:ENST00000492343.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	56	2	3.07862	3.220465	3.36231	0.0060153	0.00161678	0.0674604	0.0369204
chr5	6719717	6719817	2315898	0	+	0.45	(0.44,0.476]	chr5	224267	42	INTRON	INTRON	TENT4A	ENSG00000112941.14	ENST00000230859.8:ENST00000515721.1:ENST00000631941.2	protein_coding	protein_coding	protein_coding	protein_coding	2	56	2	3.07862	3.220465	3.36231	0.0060153	0.00161678	0.0674604	0.0369204
chr13	98000996	98001070	5520987	0	+	0.581081	(0.57,1]	chr13	527899	2	SS5_PROX	SS5_PROX:INTRON	IPO5	ENSG00000065150.21	ENST00000651721.2:ENST00000261574.10:ENST00000357602.7:ENST00000490680.5:ENST00000469360.5	protein_coding	protein_coding	protein_coding	protein_coding	9	105	2	2.6425	3.22041	3.79832	6.9173e-5	3.47703e-7	0.00689289	3.20681e-4
chr1	45517759	45517856	439704	0	-	0.360825	(0.35,0.378]	chr1	53263	16	INTRON	INTRON	PRDX1	ENSG00000117450.15	ENST00000676549.1:ENST00000424390.2:ENST00000447184.6:ENST00000262746.5:ENST00000319248.13:ENST00000372079.1	protein_coding	protein_coding	protein_coding	protein_coding	2	61	2	2.94111	3.22039	3.49967	0.0104563	9.80974e-4	0.0855102	0.0287765
chr7	50595840	50595935	3530673	0	-	0.357895	(0.35,0.378]	chr7	329387	1	SS3_PROX	SS3_PROX:INTRON	GRB10	ENSG00000106070.20	ENST00000335866.7:ENST00000398812.6:ENST00000398810.6:ENST00000401949.6:ENST00000402578.5:ENST00000644769.1:ENST00000403097.6:ENST00000644879.1:ENST00000406641.5:ENST00000402497.6:ENST00000357271.9:ENST00000643299.1:ENST00000407526.6:ENST00000645075.2:ENST00000473696.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	61	2	2.94111	3.22039	3.49967	0.0104563	9.80974e-4	0.0855102	0.0287765
chr7	101923588	101923687	3367428	0	+	0.474747	(0.44,0.476]	chr7	315225	70	INTRON	INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000497815.5:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000558469.5:ENST00000560541.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	125	2	2.40554	3.2200550000000003	4.03457	5.0428e-4	1.03446e-4	0.0202328	0.00915599
chr11	1305127	1305224	4890853	0	-	0.525773	(0.515,0.57]	chr11	458116	25	INTRON	INTRON	TOLLIP	ENSG00000078902.16	ENST00000317204.11:ENST00000525159.5:ENST00000263646.11:ENST00000530506.5:ENST00000527938.5:ENST00000530541.1:ENST00000527746.5:ENST00000527638.1:ENST00000532551.1:ENST00000530821.1:ENST00000527085.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	37	2	1.67758	3.22001	4.76244	0.0471728	0.00362147	0.168737	0.0533855
chr16	24766847	24766947	6329587	0	+	0.55	(0.515,0.57]	chr16	605945	81	INTRON	INTRON	TNRC6A	ENSG00000090905.19	ENST00000395799.8:ENST00000315183.11:ENST00000562829.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	37	2	1.67758	3.22001	4.76244	0.0471728	0.00362147	0.168737	0.0533855
chr17	57442124	57442222	6634616	0	+	0.55102	(0.515,0.57]	chr17	648053	10	INTRON	INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000674961.1:ENST00000582453.5:ENST00000675656.1:ENST00000322684.7:ENST00000442934.6:ENST00000579180.2:ENST00000579205.5:ENST00000579505.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	37	2	1.67758	3.22001	4.76244	0.0471728	0.00362147	0.168737	0.0533855
chr7	132844268	132844368	3643503	0	-	0.4	(0.378,0.408]	chr7	338836	54	INTRON	INTRON	CHCHD3	ENSG00000106554.13	ENST00000262570.10:ENST00000448878.6:ENST00000496427.5:ENST00000423635.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	54	2	1.52219	3.2199750000000003	4.91776	0.0531838	0.00196368	0.162538	0.0411469
chr1	19161997	19162077	386312	0	-	0.45	(0.44,0.476]	chr1	45971	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	UBR4	ENSG00000127481.15	ENST00000375254.8:ENST00000417040.1:ENST00000419533.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	34	2	2.00609	3.2199299999999997	4.43377	0.0360127	0.0162803	0.152355	0.101453
chr10	109877291	109877390	4696635	0	-	0.454545	(0.44,0.476]	chr10	433046	18	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	XPNPEP1	ENSG00000108039.18	ENST00000322238.12:ENST00000369683.5:ENST00000502935.6:ENST00000488118.6:ENST00000494564.5:ENST00000510988.5:ENST00000472336.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	34	2	2.00609	3.2199299999999997	4.43377	0.0360127	0.0162803	0.152355	0.101453
chr7	102888308	102888408	3590508	0	-	0.46	(0.44,0.476]	chr7	335183	36	INTRON	INTRON	FBXL13	ENSG00000161040.18	ENST00000694871.1:ENST00000694870.1:ENST00000448002.6:ENST00000379305.7:ENST00000440067.3:ENST00000456695.6:ENST00000313221.8:ENST00000436908.5:ENST00000455112.7:ENST00000477915.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	34	2	2.00609	3.2199299999999997	4.43377	0.0360127	0.0162803	0.152355	0.101453
chr20	43668687	43668785	7276071	0	+	0.510204	(0.476,0.515]	chr20	739717	10	INTRON	INTRON	MYBL2	ENSG00000101057.16	ENST00000396863.8:ENST00000217026.5	protein_coding	protein_coding	protein_coding	protein_coding	4	93	2	2.7742	3.219925	3.66565	8.54322e-4	4.18031e-4	0.0267428	0.0182827
chr9	131443684	131443784	4217471	0	+	0.55	(0.515,0.57]	chr9	386747	1	SS3_PROX	SS3_PROX:INTRON	PRRC2B	ENSG00000288701.1	ENST00000684596.1:ENST00000683519.1:ENST00000682501.1	protein_coding	protein_coding	protein_coding	protein_coding	3	37	2	1.60221	3.219925	4.83764	0.0581855	0.00279527	0.188704	0.0469265
chr10	68960449	68960549	4443531	0	+	0.44	(0.408,0.44]	chr10	409832	2	SS5_PROX	SS5_PROX:INTRON	DDX21	ENSG00000165732.14	ENST00000685106.1:ENST00000687162.1:ENST00000684824.1:ENST00000354185.9:ENST00000686528.1:ENST00000690650.1:ENST00000690316.1:ENST00000620315.2:ENST00000685513.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	64	2	1.73532	3.21971	4.7041	0.0194186	0.00381677	0.109149	0.0562562
chr17	8540509	8540608	6721121	0	-	0.282828	(0.28,0.32]	chr17	659595	42	INTRON	INTRON	MYH10	ENSG00000133026.14	ENST00000379980.8:ENST00000269243.8:ENST00000688902.1:ENST00000684843.1:ENST00000687178.1:ENST00000692526.1:ENST00000688497.1:ENST00000685418.1:ENST00000693441.1:ENST00000686654.1:ENST00000360416.8:ENST00000691566.1:ENST00000686521.1:ENST00000692077.1:ENST00000686956.1:ENST00000465458.2:ENST00000690895.1:ENST00000690548.1:ENST00000692894.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	29	2	2.29724	3.21969	4.14214	0.0579756	0.0554156	0.18407	0.167723
chr17	41754603	41754698	6768993	0	-	0.284211	(0.28,0.32]	chr17	666230	1	UTR3	UTR3:EXON_MRNA	JUP	ENSG00000173801.17	ENST00000310706.9:ENST00000393930.5:ENST00000393931.8	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	2.29724	3.21969	4.14214	0.0579756	0.0554156	0.18407	0.167723
chr2	242133035	242133134	1057185	0	+	0.292929	(0.28,0.32]	chr2	112759	7	INTRON	INTRON	LINC01881	ENSG00000220804.10	ENST00000456398.5:ENST00000692555.1:ENST00000622435.4:ENST00000614114.4:ENST00000682782.1:ENST00000433444.1:ENST00000683938.1:ENST00000682139.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	1	29	2	2.29724	3.21969	4.14214	0.0579756	0.0554156	0.18407	0.167723
chr3	101334544	101334643	1756769	0	-	0.313131	(0.28,0.32]	chr3	178241	13	INTRON	INTRON	SENP7	ENSG00000138468.16	ENST00000394095.7:ENST00000314261.11:ENST00000394094.6:ENST00000394091.5:ENST00000348610.3	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	2.29724	3.21969	4.14214	0.0579756	0.0554156	0.18407	0.167723
chr3	197266116	197266215	1903186	0	-	0.313131	(0.28,0.32]	chr3	190664	55	INTRON	INTRON	DLG1	ENSG00000075711.21	ENST00000667157.1:ENST00000346964.6:ENST00000663148.1:ENST00000655488.1:ENST00000357674.9:ENST00000671185.1:ENST00000658701.1:ENST00000667104.1:ENST00000661336.1:ENST00000669565.1:ENST00000670455.1:ENST00000656087.1:ENST00000661453.1:ENST00000664564.1:ENST00000660432.1:ENST00000660898.1:ENST00000657381.1:ENST00000659221.1:ENST00000654737.1:ENST00000659716.1:ENST00000664991.1:ENST00000419354.5:ENST00000661440.1:ENST00000667971.1:ENST00000670935.1:ENST00000666007.1:ENST00000661229.1:ENST00000661013.1:ENST00000436682.6:ENST00000662727.1:ENST00000422288.6:ENST00000448528.6:ENST00000656944.1:ENST00000392382.6:ENST00000450955.5:ENST00000419227.5:ENST00000392381.7:ENST00000471733.5:ENST00000419553.6:ENST00000456699.6:ENST00000392380.6:ENST00000485409.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	29	2	2.29724	3.21969	4.14214	0.0579756	0.0554156	0.18407	0.167723
chr4	153503881	153503981	2067627	0	+	0.29	(0.28,0.32]	chr4	204567	296	INTRON	INTRON	TMEM131L	ENSG00000121210.16	ENST00000409663.7:ENST00000445960.5:ENST00000409959.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	29	2	2.29724	3.21969	4.14214	0.0579756	0.0554156	0.18407	0.167723
chr7	129902126	129902226	3637462	0	-	0.31	(0.28,0.32]	chr7	338216	208	INTRON	INTRON	UBE2H	ENSG00000186591.13	ENST00000355621.8:ENST00000649897.1:ENST00000473814.6:ENST00000496698.5:ENST00000472396.5:ENST00000480245.5:ENST00000490974.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	29	2	2.29724	3.21969	4.14214	0.0579756	0.0554156	0.18407	0.167723
chr8	63178100	63178199	3773084	0	+	0.313131	(0.28,0.32]	chr8	349936	23	INTRON	INTRON	YTHDF3	ENSG00000185728.17	ENST00000617200.1:ENST00000623280.3:ENST00000539294.6:ENST00000621957.4:ENST00000517371.5:ENST00000615676.1:ENST00000621413.4:ENST00000612880.4:ENST00000617952.4:ENST00000621890.4:ENST00000619337.4:ENST00000613853.4:ENST00000621820.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	29	2	2.29724	3.21969	4.14214	0.0579756	0.0554156	0.18407	0.167723
chr10	21537452	21537550	4404438	0	+	0.459184	(0.44,0.476]	chr10	406413	23	INTRON	INTRON	MLLT10	ENSG00000078403.17	ENST00000651097.1:ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000377100.8:ENST00000377091.7:ENST00000650772.1:ENST00000651298.1:ENST00000471315.5:ENST00000652497.1:ENST00000495130.5:ENST00000377059.7:ENST00000621220.4:ENST00000476557.5:ENST00000462999.5:ENST00000430455.2:ENST00000479634.1:ENST00000480415.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	56	2	3.02751	3.2196350000000002	3.41176	0.00715968	0.00130987	0.0723634	0.0333932
chr8	123080818	123080917	3850310	0	+	0.454545	(0.44,0.476]	chr8	354666	32	INTRON	INTRON	TBC1D31	ENSG00000156787.17	ENST00000520368.5:ENST00000519418.5:ENST00000287380.6:ENST00000522420.5:ENST00000327098.9:ENST00000518099.5:ENST00000521676.5:ENST00000524307.5:ENST00000522276.1:ENST00000518684.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	52	2	1.35267	3.21963	5.08659	0.060678	0.00226401	0.192323	0.0425438
chr1	220042161	220042261	639150	0	-	0.45	(0.44,0.476]	chr1	75333	15	INTRON	INTRON	EPRS1	ENSG00000136628.18	ENST00000366923.8:ENST00000609181.5:ENST00000477030.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	57	2	2.80275	3.2195650000000002	3.63638	0.0146513	4.74104e-4	0.0982604	0.0196816
chr16	72600693	72600793	6518672	0	-	0.44	(0.408,0.44]	chr16	631372	298	INTRON	INTRON	LINC01572	ENSG00000261008.8	ENST00000624829.4:ENST00000561611.2:ENST00000656218.1:ENST00000666555.2:ENST00000664155.1:ENST00000657725.1:ENST00000563770.5:ENST00000668081.1:ENST00000570152.2:ENST00000662171.1:ENST00000691892.1:ENST00000659470.1:ENST00000655530.1:ENST00000570035.5:ENST00000563823.6	lncRNA	lncRNA	lncRNA	lncRNA	4	53	2	1.58026	3.21949	4.85872	0.0444624	0.00221911	0.149888	0.0435144
chr1	161865127	161865219	236853	0	+	0.380435	(0.378,0.408]	chr1	28608	4	UTR3	UTR3:EXON_MRNA:INTRON	ATF6	ENSG00000118217.7	ENST00000680688.1:ENST00000679853.1:ENST00000681738.1:ENST00000681801.1:ENST00000681779.1:ENST00000367942.4:ENST00000681001.1:ENST00000679886.1:ENST00000681169.1:ENST00000681492.1:ENST00000680481.1:ENST00000680180.1:ENST00000681187.1:ENST00000680462.1:ENST00000681557.1:ENST00000681912.1:ENST00000679833.1:ENST00000681541.1:ENST00000681036.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	108	2	2.1516	3.2194350000000003	4.28727	0.0065185	1.52039e-5	0.0699952	0.00293131
chr12	64715441	64715541	5350132	0	-	0.48	(0.476,0.515]	chr12	511252	21	UTR3	UTR3:EXON_MRNA	GNS	ENSG00000135677.11	ENST00000418919.6:ENST00000258145.8	protein_coding	protein_coding	protein_coding	protein_coding	3	76	2	2.63396	3.219255	3.80455	0.00426634	3.04782e-4	0.0596808	0.0161236
chr4	102822743	102822843	2213312	0	-	0.53	(0.515,0.57]	chr4	216759	99	INTRON	INTRON	UBE2D3	ENSG00000109332.20	ENST00000453744.7:ENST00000394804.6:ENST00000394803.9:ENST00000394801.8:ENST00000343106.9:ENST00000503742.5:ENST00000321805.11:ENST00000350435.11:ENST00000338145.7:ENST00000349311.12:ENST00000504211.5:ENST00000357194.10:ENST00000505207.5:ENST00000507845.5:ENST00000502404.5:ENST00000508635.5:ENST00000505307.5:ENST00000510129.5:ENST00000508476.5:ENST00000502563.5:ENST00000508238.5:ENST00000514755.5:ENST00000508974.5:ENST00000502690.5:ENST00000508818.5:ENST00000503418.5:ENST00000508249.1:ENST00000513098.5:ENST00000503282.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	106	2	2.50953	3.2192299999999996	3.92893	0.0023952	2.90076e-6	0.0440612	0.00109346
chr17	46106784	46106884	6784002	0	-	0.31	(0.28,0.32]	chr17	669208	117	INTRON	INTRON	KANSL1	ENSG00000120071.15	ENST00000574590.6:ENST00000572904.6:ENST00000432791.7:ENST00000575318.6:ENST00000638275.1:ENST00000262419.10:ENST00000648792.1:ENST00000639531.1:ENST00000639150.1:ENST00000639853.1:ENST00000571698.2:ENST00000639375.1:ENST00000577114.2:ENST00000638269.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	45	2	1.91611	3.21922	4.52233	0.0539102	0.0129279	0.164153	0.0990564
chr1	212323040	212323140	308454	0	+	0.4	(0.378,0.408]	chr1	35576	36	INTRON	INTRON	PPP2R5A	ENSG00000066027.12	ENST00000261461.7:ENST00000537030.3:ENST00000498129.6:ENST00000479259.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	28	2	2.2259	3.21908	4.21226	0.0662381	0.0177403	0.181924	0.11319
chr12	95222289	95222388	5192141	0	+	0.393939	(0.378,0.408]	chr12	490986	33	INTRON	INTRON	VEZT	ENSG00000028203.19	ENST00000550803.5:ENST00000549589.5:ENST00000547611.5:ENST00000547997.5:ENST00000549002.5:ENST00000546557.5:ENST00000551746.5:ENST00000548838.5:ENST00000436874.6:ENST00000547484.5:ENST00000551472.5:ENST00000546398.5:ENST00000548455.5:ENST00000553063.5:ENST00000551792.5:ENST00000552660.5:ENST00000552626.5:ENST00000548245.5:ENST00000549624.5:ENST00000548822.5:ENST00000552031.5:ENST00000551994.5:ENST00000551039.5:ENST00000549192.5:ENST00000552821.5:ENST00000548371.5:ENST00000550106.5:ENST00000547894.5:ENST00000551695.5:ENST00000551356.5:ENST00000551311.5:ENST00000546365.5:ENST00000551902.5:ENST00000546445.5:ENST00000546409.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	28	2	2.2259	3.21908	4.21226	0.0662381	0.0177403	0.181924	0.11319
chr14	22946708	22946808	5841751	0	-	0.39	(0.378,0.408]	chr14	555300	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HAUS4	ENSG00000092036.19	ENST00000206474.11:ENST00000490506.5:ENST00000541587.6:ENST00000554446.5:ENST00000347758.6:ENST00000342454.12:ENST00000555367.5:ENST00000555986.5:ENST00000556421.5:ENST00000553859.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	28	2	2.2259	3.21908	4.21226	0.0662381	0.0177403	0.181924	0.11319
chr17	66411212	66411312	6663384	0	+	0.39	(0.378,0.408]	chr17	650326	470	INTRON	INTRON	PRKCA	ENSG00000154229.12	ENST00000413366.8:ENST00000578063.5:ENST00000284384.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	28	2	2.2259	3.21908	4.21226	0.0662381	0.0177403	0.181924	0.11319
chr2	30525590	30525690	727606	0	+	0.38	(0.378,0.408]	chr2	83988	1	CDS_START	CDS_START:CDS:UTR3:EXON_MRNA:INTRON	LCLAT1	ENSG00000172954.14	ENST00000466477.5:ENST00000465200.5:ENST00000319406.8:ENST00000379509.8:ENST00000491680.6:ENST00000488144.5:ENST00000465538.5:ENST00000309052.8:ENST00000478015.5:ENST00000476038.5:ENST00000497423.1:ENST00000476535.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	28	2	2.2259	3.21908	4.21226	0.0662381	0.0177403	0.181924	0.11319
chr2	156204681	156204781	1248476	0	-	0.38	(0.378,0.408]	chr2	132415	537	INTRON	INTRON	LINC01876	ENSG00000226383.7	ENST00000635799.1:ENST00000662073.1:ENST00000659502.1:ENST00000428651.2:ENST00000661513.1:ENST00000657334.1:ENST00000638047.1:ENST00000637554.1:ENST00000636956.1:ENST00000637665.1:ENST00000637476.1:ENST00000637324.1	lncRNA	lncRNA	lncRNA	lncRNA	1	28	2	2.2259	3.21908	4.21226	0.0662381	0.0177403	0.181924	0.11319
chr22	39425809	39425907	7515376	0	+	0.408163	(0.378,0.408]	chr22	767880	35	INTRON	INTRON	TAB1	ENSG00000100324.14	ENST00000216160.11:ENST00000331454.3:ENST00000473491.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	28	2	2.2259	3.21908	4.21226	0.0662381	0.0177403	0.181924	0.11319
chr3	120080763	120080863	1795321	0	-	0.4	(0.378,0.408]	chr3	180286	61	INTRON	INTRON	GSK3B	ENSG00000082701.17	ENST00000264235.13:ENST00000316626.6:ENST00000678439.1:ENST00000650344.2:ENST00000677788.1:ENST00000678245.1:ENST00000677169.1:ENST00000677128.1:ENST00000677530.1:ENST00000677034.1:ENST00000679131.1:ENST00000676743.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	28	2	2.2259	3.21908	4.21226	0.0662381	0.0177403	0.181924	0.11319
chr15	82626092	82626192	6248287	0	-	0.41	(0.408,0.44]	chr15	596252	423	INTRON	INTRON	CPEB1	ENSG00000214575.10	ENST00000684509.1:ENST00000614918.4:ENST00000611031.4:ENST00000617958.4:ENST00000615198.4:ENST00000620182.4:ENST00000617522.4:ENST00000569257.5:ENST00000567678.1	protein_coding	protein_coding	protein_coding	protein_coding	2	38	2	2.00228	3.21904	4.4358	0.0389732	0.00893097	0.143072	0.0849778
chr1	155913239	155913337	564629	0	-	0.357143	(0.35,0.378]	chr1	67435	3	UTR3	UTR3:EXON_MRNA	KHDC4	ENSG00000132680.11	ENST00000368321.8:ENST00000368320.7	protein_coding	protein_coding	protein_coding	protein_coding	5	133	2	2.90945	3.2190250000000002	3.5286	3.57589e-4	1.11244e-4	0.0169202	0.00945289
chr8	102381005	102381105	4012439	0	-	0.5	(0.476,0.515]	chr8	367237	190	INTRON	INTRON	UBR5	ENSG00000104517.13	ENST00000520539.6:ENST00000220959.8:ENST00000521922.5	protein_coding	protein_coding	protein_coding	protein_coding	3	78	2	3.05152	3.21889	3.38626	0.0064848	1.1754e-4	0.0699952	0.00930356
chr2	55566812	55566910	1124601	0	-	0.459184	(0.44,0.476]	chr2	120611	14	INTRON	INTRON	PPP4R3B	ENSG00000275052.5	ENST00000616407.2:ENST00000611717.4:ENST00000616288.4	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	2.46135	3.2188049999999997	3.97626	0.0374637	0.0300538	0.142135	0.140008
chr20	53605863	53605962	7358606	0	-	0.454545	(0.44,0.476]	chr20	750319	78	INTRON	INTRON	ZNF217	ENSG00000171940.14	ENST00000431687.5:ENST00000540425.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	28	2	2.46135	3.2188049999999997	3.97626	0.0374637	0.0300538	0.142135	0.140008
chr3	17388607	17388706	1626867	0	-	0.454545	(0.44,0.476]	chr3	168157	42	INTRON	INTRON	TBC1D5	ENSG00000131374.15	ENST00000253692.11:ENST00000696125.1:ENST00000414318.2:ENST00000429383.8:ENST00000446818.6:ENST00000429924.6:ENST00000415814.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	28	2	2.46135	3.2188049999999997	3.97626	0.0374637	0.0300538	0.142135	0.140008
chr3	196931418	196931517	1597089	0	+	0.474747	(0.44,0.476]	chr3	165448	6	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	SENP5	ENSG00000119231.11	ENST00000323460.10:ENST00000434433.1	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	2.46135	3.2188049999999997	3.97626	0.0374637	0.0300538	0.142135	0.140008
chr9	125339085	125339184	4199051	0	+	0.474747	(0.44,0.476]	chr9	383253	11	INTRON	INTRON	GAPVD1	ENSG00000165219.23	ENST00000497580.5:ENST00000297933.11:ENST00000470056.5:ENST00000394105.6:ENST00000394083.6:ENST00000495955.5:ENST00000467750.5:ENST00000394104.6:ENST00000312123.13:ENST00000431329.5:ENST00000436712.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	28	2	2.46135	3.2188049999999997	3.97626	0.0374637	0.0300538	0.142135	0.140008
chr9	131489088	131489187	4217954	0	+	0.454545	(0.44,0.476]	chr9	386870	6	INTRON	INTRON	PRRC2B	ENSG00000288701.1	ENST00000684596.1:ENST00000683519.1:ENST00000682501.1:ENST00000682662.1:ENST00000683161.1	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	2.46135	3.2188049999999997	3.97626	0.0374637	0.0300538	0.142135	0.140008
chr15	85095856	85095955	6090082	0	+	0.282828	(0.28,0.32]	chr15	579554	43	INTRON	INTRON	PDE8A	ENSG00000073417.15	ENST00000310298.8:ENST00000557957.5:ENST00000394553.6:ENST00000339708.9:ENST00000478717.5:ENST00000485596.5:ENST00000559742.5:ENST00000559086.5:ENST00000560789.5:ENST00000557819.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	128	2	3.1651	3.218655	3.27221	8.79973e-4	3.15212e-4	0.0272129	0.0159645
chr21	18732925	18733025	7435132	0	-	0.56	(0.515,0.57]	chr21	758112	1203	INTRON	INTRON	MIR548XHG	ENSG00000224141.6	ENST00000671206.1:ENST00000437492.6:ENST00000355189.7:ENST00000653218.1:ENST00000656413.1:ENST00000414582.1	lncRNA	lncRNA	lncRNA	lncRNA	2	50	2	2.98677	3.218455	3.45014	0.00632549	0.00116948	0.0722266	0.0312127
chr5	105316462	105316562	2695591	0	-	0.52	(0.515,0.57]	chr5	254248	702	INTRON	INTRON	ENSG00000251574	ENSG00000251574.8	ENST00000503650.1	lncRNA	lncRNA	lncRNA	lncRNA	2	50	2	2.98677	3.218455	3.45014	0.00632549	0.00116948	0.0722266	0.0312127
chr2	227531473	227531555	1026259	0	+	0.402439	(0.378,0.408]	chr2	109594	3	SS5_PROX	SS5_PROX:INTRON	AGFG1	ENSG00000173744.18	ENST00000409979.6:ENST00000310078.13:ENST00000409315.5:ENST00000373671.7:ENST00000409171.5:ENST00000456594.1	protein_coding	protein_coding	protein_coding	protein_coding	5	125	2	3.14746	3.2184150000000002	3.28937	3.2389e-4	8.84383e-5	0.0165891	0.00791674
chr1	39001506	39001606	74502	0	+	0.52	(0.515,0.57]	chr1	9639	4	SS5_PROX	SS5_PROX:INTRON	AKIRIN1	ENSG00000174574.16	ENST00000432648.8:ENST00000372984.8:ENST00000446189.6:ENST00000531822.1	protein_coding	protein_coding	protein_coding	protein_coding	1	23	2	2.35125	3.2183149999999996	4.08538	0.0436431	0.0253843	0.162255	0.12011
chr1	43682092	43682191	85813	0	+	0.525253	(0.515,0.57]	chr1	11569	99	INTRON	INTRON	KDM4A	ENSG00000066135.13	ENST00000372396.4	protein_coding	protein_coding	protein_coding	protein_coding	1	23	2	2.35125	3.2183149999999996	4.08538	0.0436431	0.0253843	0.162255	0.12011
chr1	89538948	89539048	157541	0	+	0.54	(0.515,0.57]	chr1	17165	116	INTRON	INTRON	LRRC8B	ENSG00000197147.15	ENST00000330947.7:ENST00000439853.6:ENST00000449440.5:ENST00000640258.1:ENST00000639264.1	protein_coding	protein_coding	protein_coding	protein_coding	1	23	2	2.35125	3.2183149999999996	4.08538	0.0436431	0.0253843	0.162255	0.12011
chr16	23414928	23415024	6463696	0	-	0.53125	(0.515,0.57]	chr16	623753	10	INTRON	INTRON	COG7	ENSG00000168434.13	ENST00000307149.10:ENST00000567821.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	23	2	2.35125	3.2183149999999996	4.08538	0.0436431	0.0253843	0.162255	0.12011
chr19	2756836	2756936	7116478	0	-	0.53	(0.515,0.57]	chr19	715453	1	SS5_PROX	SS5_PROX:INTRON	SGTA	ENSG00000104969.11	ENST00000221566.7:ENST00000678109.1:ENST00000676984.1:ENST00000677513.1:ENST00000676943.1:ENST00000679132.1:ENST00000677731.1:ENST00000679138.1:ENST00000677562.1:ENST00000678595.1:ENST00000677754.1:ENST00000676611.1:ENST00000677149.1:ENST00000591984.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	23	2	2.35125	3.2183149999999996	4.08538	0.0436431	0.0253843	0.162255	0.12011
chr2	37575391	37575491	745954	0	+	0.57	(0.515,0.57]	chr2	85455	38	INTRON	INTRON	ENSG00000236213	ENSG00000236213.3	ENST00000659653.1	lncRNA	lncRNA	lncRNA	lncRNA	1	23	2	2.35125	3.2183149999999996	4.08538	0.0436431	0.0253843	0.162255	0.12011
chr2	55597317	55597417	1124917	0	-	0.52	(0.515,0.57]	chr2	120665	80	INTRON	INTRON	PPP4R3B	ENSG00000275052.5	ENST00000616407.2:ENST00000611717.4:ENST00000616288.4	protein_coding	protein_coding	protein_coding	protein_coding	1	23	2	2.35125	3.2183149999999996	4.08538	0.0436431	0.0253843	0.162255	0.12011
chr3	141595721	141595820	1525759	0	+	0.535354	(0.515,0.57]	chr3	158941	52	INTRON	INTRON	RASA2	ENSG00000155903.14	ENST00000286364.9:ENST00000509118.5:ENST00000509032.5:ENST00000506365.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	23	2	2.35125	3.2183149999999996	4.08538	0.0436431	0.0253843	0.162255	0.12011
chr4	165303720	165303819	2079422	0	+	0.525253	(0.515,0.57]	chr4	205509	37	INTRON	INTRON	KLHL2	ENSG00000109466.14	ENST00000226725.11:ENST00000514860.5:ENST00000538127.5:ENST00000506824.5:ENST00000421009.6:ENST00000506541.5:ENST00000506761.1:ENST00000509028.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	23	2	2.35125	3.2183149999999996	4.08538	0.0436431	0.0253843	0.162255	0.12011
chr5	32128425	32128524	2597054	0	-	0.525253	(0.515,0.57]	chr5	246732	14	INTRON	INTRON	GOLPH3	ENSG00000113384.14	ENST00000265070.7:ENST00000503610.5:ENST00000512668.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	23	2	2.35125	3.2183149999999996	4.08538	0.0436431	0.0253843	0.162255	0.12011
chr7	130021918	130022018	3638015	0	-	0.55	(0.515,0.57]	chr7	338252	2	SS5_PROX	SS5_PROX:INTRON	ZC3HC1	ENSG00000091732.17	ENST00000311873.9:ENST00000358303.9:ENST00000360708.9:ENST00000467642.5:ENST00000648450.1:ENST00000481503.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	23	2	2.35125	3.2183149999999996	4.08538	0.0436431	0.0253843	0.162255	0.12011
chr9	129089293	129089388	4208978	0	+	0.568421	(0.515,0.57]	chr9	385587	4	UTR3	UTR3:EXON_MRNA	DOLPP1	ENSG00000167130.18	ENST00000372546.9:ENST00000406974.7:ENST00000327812.12:ENST00000412363.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	23	2	2.35125	3.2183149999999996	4.08538	0.0436431	0.0253843	0.162255	0.12011
chr14	95538080	95538179	5808520	0	+	0.353535	(0.35,0.378]	chr14	550660	23	INTRON	INTRON	GLRX5	ENSG00000182512.5	ENST00000553672.1:ENST00000331334.5:ENST00000557731.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	36	2	2.04358	3.218305	4.39303	0.0329533	0.0237246	0.145171	0.118716
chr21	34107552	34107652	7401435	0	+	0.37	(0.35,0.378]	chr21	753975	14	INTRON	INTRON	MRPS6	ENSG00000243927.6	ENST00000488492.5:ENST00000477091.5:ENST00000399312.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	36	2	2.04358	3.218305	4.39303	0.0329533	0.0237246	0.145171	0.118716
chr15	41426273	41426373	6005453	0	+	0.44	(0.408,0.44]	chr15	571377	86	INTRON	INTRON	RTF1	ENSG00000137815.15	ENST00000558298.5:ENST00000389629.9:ENST00000462276.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	57	2	2.84077	3.218205	3.59564	0.0132196	5.73354e-4	0.0940535	0.0217398
chr7	128494841	128494941	3407258	0	+	0.51	(0.476,0.515]	chr7	318309	5	INTRON	INTRON	METTL2B	ENSG00000165055.16	ENST00000482555.5:ENST00000262432.13:ENST00000497665.5:ENST00000480046.5:ENST00000481392.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	39	2	2.21677	3.218205	4.21964	0.0207026	0.0167715	0.110999	0.110511
chr12	110286168	110286267	5226147	0	+	0.484848	(0.476,0.515]	chr12	495234	30	INTRON	INTRON	ATP2A2	ENSG00000174437.18	ENST00000552636.2:ENST00000308664.10:ENST00000539276.7:ENST00000377685.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	41	2	1.74317	3.218185	4.6932	0.0396373	0.00753088	0.161534	0.074841
chr7	121160839	121160939	3395377	0	+	0.49	(0.476,0.515]	chr7	317781	108	INTRON	INTRON	CPED1	ENSG00000106034.18	ENST00000310396.10:ENST00000450913.6:ENST00000423795.5:ENST00000466055.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	41	2	1.74317	3.218185	4.6932	0.0396373	0.00753088	0.161534	0.074841
chr9	91276338	91276438	4280364	0	-	0.44	(0.408,0.44]	chr9	393785	550	INTRON	INTRON	AUH	ENSG00000148090.12	ENST00000303617.5:ENST00000375731.9	protein_coding	protein_coding	protein_coding	protein_coding	3	76	2	2.53313	3.21812	3.90311	0.00739595	1.24325e-4	0.074277	0.00952291
chr1	946888	946974	358295	0	-	0.534884	(0.515,0.57]	chr1	41248	5	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	NOC2L	ENSG00000188976.11	ENST00000327044.7:ENST00000483767.5:ENST00000477976.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	23	2	2.23241	3.21811	4.20381	0.0581268	0.0189208	0.188651	0.108861
chr1	16948130	16948230	38402	0	+	0.52	(0.515,0.57]	chr1	4529	4	SS3_PROX	SS3_PROX:INTRON	CROCC	ENSG00000058453.17	ENST00000375541.10:ENST00000445545.6:ENST00000467938.5:ENST00000494191.6:ENST00000486318.1:ENST00000498688.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	23	2	2.23241	3.21811	4.20381	0.0581268	0.0189208	0.188651	0.108861
chr1	50911883	50911983	451772	0	-	0.54	(0.515,0.57]	chr1	54267	535	INTRON	INTRON	FAF1	ENSG00000185104.21	ENST00000396153.7:ENST00000487898.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	23	2	2.23241	3.21811	4.20381	0.0581268	0.0189208	0.188651	0.108861
chr14	37072588	37072688	5877013	0	-	0.53	(0.515,0.57]	chr14	558013	1972	INTRON	INTRON	SLC25A21	ENSG00000183032.12	ENST00000331299.6:ENST00000555449.5:ENST00000557611.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	23	2	2.23241	3.21811	4.20381	0.0581268	0.0189208	0.188651	0.108861
chr14	77550395	77550495	5927469	0	-	0.53	(0.515,0.57]	chr14	563683	140	INTRON	INTRON	SPTLC2	ENSG00000100596.8	ENST00000216484.7:ENST00000692906.1:ENST00000687688.1:ENST00000686627.1:ENST00000556607.1:ENST00000554901.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	23	2	2.23241	3.21811	4.20381	0.0581268	0.0189208	0.188651	0.108861
chr16	81511790	81511889	6405669	0	+	0.525253	(0.515,0.57]	chr16	615031	159	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6	protein_coding	protein_coding	protein_coding	protein_coding	1	23	2	2.23241	3.21811	4.20381	0.0581268	0.0189208	0.188651	0.108861
chr17	76091831	76091928	6840371	0	-	0.525773	(0.515,0.57]	chr17	676542	2	INTRON	INTRON	EXOC7	ENSG00000182473.22	ENST00000589210.6:ENST00000332065.9:ENST00000335146.11:ENST00000607838.5:ENST00000467929.6:ENST00000405575.8:ENST00000357231.8:ENST00000411744.6:ENST00000634349.1:ENST00000592559.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	23	2	2.23241	3.21811	4.20381	0.0581268	0.0189208	0.188651	0.108861
chr18	2759700	2759795	6865948	0	+	0.515789	(0.515,0.57]	chr18	680136	2	EXON_MRNA	EXON_MRNA:INTRON	SMCHD1	ENSG00000101596.17	ENST00000320876.11:ENST00000688342.1:ENST00000693213.1:ENST00000577880.5:ENST00000584897.5:ENST00000686763.1:ENST00000686864.1:ENST00000688708.1:ENST00000645355.1:ENST00000688964.1:ENST00000685656.1:ENST00000689034.1:ENST00000693522.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	23	2	2.23241	3.21811	4.20381	0.0581268	0.0189208	0.188651	0.108861
chr19	2224346	2224436	6996812	0	+	0.522222	(0.515,0.57]	chr19	693563	5	INTRON	INTRON	DOT1L	ENSG00000104885.19	ENST00000398665.8:ENST00000686010.1:ENST00000457590.2	protein_coding	protein_coding	protein_coding	protein_coding	1	23	2	2.23241	3.21811	4.20381	0.0581268	0.0189208	0.188651	0.108861
chr19	11776812	11776911	7018820	0	+	0.535354	(0.515,0.57]	chr19	697771	93	INTRON	INTRON	ZNF441	ENSG00000197044.11	ENST00000357901.5:ENST00000462251.1:ENST00000409902.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	23	2	2.23241	3.21811	4.20381	0.0581268	0.0189208	0.188651	0.108861
chr2	138482725	138482825	1235372	0	-	0.54	(0.515,0.57]	chr2	131479	51	INTRON	INTRON	SPOPL-DT	ENSG00000228043.5	ENST00000431985.5:ENST00000414911.1	lncRNA	lncRNA	lncRNA	lncRNA	1	23	2	2.23241	3.21811	4.20381	0.0581268	0.0189208	0.188651	0.108861
chr3	49387660	49387760	1693819	0	-	0.52	(0.515,0.57]	chr3	173707	117	INTRON	INTRON	RHOA	ENSG00000067560.14	ENST00000678200.1:ENST00000422781.6:ENST00000676712.2:ENST00000678921.2:ENST00000445425.6:ENST00000454011.7:ENST00000418115.6:ENST00000679208.1:ENST00000677684.1:ENST00000431929.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	23	2	2.23241	3.21811	4.20381	0.0581268	0.0189208	0.188651	0.108861
chr5	28894924	28895024	2330699	0	+	0.53	(0.515,0.57]	chr5	225135	844	INTRON	INTRON	LINC02109	ENSG00000259786.7	ENST00000658190.1	lncRNA	lncRNA	lncRNA	lncRNA	1	23	2	2.23241	3.21811	4.20381	0.0581268	0.0189208	0.188651	0.108861
chr6	45312200	45312300	3103329	0	-	0.52	(0.515,0.57]	chr6	290480	607	INTRON	INTRON	SUPT3H	ENSG00000196284.17	ENST00000475057.5:ENST00000371459.6:ENST00000371460.5:ENST00000459689.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	23	2	2.23241	3.21811	4.20381	0.0581268	0.0189208	0.188651	0.108861
chr6	159790887	159790939	3022887	0	+	0.519231	(0.515,0.57]	chr6	281994	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MRPL18	ENSG00000112110.10	ENST00000476826.5:ENST00000479638.5:ENST00000367034.5:ENST00000480842.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	23	2	2.23241	3.21811	4.20381	0.0581268	0.0189208	0.188651	0.108861
chr8	37898470	37898570	3935935	0	-	0.55	(0.515,0.57]	chr8	360576	205	INTRON	INTRON	RAB11FIP1	ENSG00000156675.16	ENST00000330843.9:ENST00000287263.8:ENST00000522727.5	protein_coding	protein_coding	protein_coding	protein_coding	1	23	2	2.23241	3.21811	4.20381	0.0581268	0.0189208	0.188651	0.108861
chr1	40417196	40417296	81889	0	+	0.35	(0.32,0.35]	chr1	10608	1	SS5_PROX	SS5_PROX:INTRON	SMAP2	ENSG00000084070.12	ENST00000372718.8:ENST00000372708.5:ENST00000614549.4:ENST00000539317.2	protein_coding	protein_coding	protein_coding	protein_coding	2	65	2	2.89743	3.2179849999999997	3.53854	0.0127608	9.09596e-4	0.0926667	0.0277043
chr15	57104865	57104965	6033980	0	+	0.44	(0.408,0.44]	chr15	574689	126	INTRON	INTRON	TCF12	ENSG00000140262.18	ENST00000438423.6:ENST00000267811.9:ENST00000333725.10:ENST00000560190.5:ENST00000559609.5:ENST00000557843.5:ENST00000557947.5:ENST00000561152.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	76	2	2.75707	3.217965	3.67886	0.00317496	3.86173e-4	0.0503542	0.017761
chr2	203284711	203284811	989352	0	+	0.42	(0.408,0.44]	chr2	106243	42	INTRON	INTRON	CYP20A1	ENSG00000119004.17	ENST00000449301.5:ENST00000429815.6:ENST00000461371.5:ENST00000463131.5:ENST00000356079.9:ENST00000489360.5:ENST00000431118.5:ENST00000443941.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	37	2	1.81572	3.217905	4.62009	0.0626779	0.00504155	0.175915	0.0646039
chr7	138519421	138519521	3435236	0	+	0.43	(0.408,0.44]	chr7	319978	1	SS5_PROX	SS5_PROX:INTRON	TRIM24	ENSG00000122779.18	ENST00000343526.9:ENST00000415680.6:ENST00000497516.5:ENST00000464210.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	37	2	1.81572	3.217905	4.62009	0.0626779	0.00504155	0.175915	0.0646039
chr9	130820853	130820953	4214933	0	+	0.26	[0,0.28]	chr9	386427	1060	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000393293.4	protein_coding	protein_coding	protein_coding	protein_coding	4	131	2	2.42502	3.21787	4.01072	0.00674727	1.64007e-4	0.0711166	0.0110295
chr15	40191349	40191449	6001556	0	+	0.3	(0.28,0.32]	chr15	570623	39	INTRON	INTRON	BUB1B	ENSG00000156970.13	ENST00000412359.7:ENST00000287598.11:ENST00000559733.5:ENST00000557848.1:ENST00000559772.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	70	2	3.08462	3.2178500000000003	3.35108	0.0078976	0.00221345	0.076155	0.0435144
chr7	132909468	132909568	3644157	0	-	0.36	(0.35,0.378]	chr7	338848	221	INTRON	INTRON	CHCHD3	ENSG00000106554.13	ENST00000262570.10:ENST00000448878.6:ENST00000496427.5:ENST00000423635.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	124	2	2.30106	3.2178050000000002	4.13455	0.0015939	8.38246e-5	0.0367961	0.00817009
chr21	6724293	6724392	7365209	0	+	0.424242	(0.408,0.44]	chr21	751694	1	SSB_ADJ	SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ENSG00000280164	ENSG00000280164.1	ENST00000623892.1	lncRNA	lncRNA	lncRNA	lncRNA	2	57	2	3.14706	3.21779	3.28852	0.00382411	0.00287185	0.0562562	0.0474836
chr1	6215540	6215637	5248	0	+	0.371134	(0.35,0.378]	chr1	1005	20	INTRON	INTRON	RNF207	ENSG00000158286.13	ENST00000377939.5:ENST00000496676.5:ENST00000483336.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	29	2	2.24535	3.217785	4.19022	0.0647516	0.0209891	0.179192	0.122348
chr1	89914616	89914716	160462	0	+	0.37	(0.35,0.378]	chr1	17285	676	INTRON	INTRON	LRRC8D	ENSG00000171492.14	ENST00000525774.5:ENST00000337338.9:ENST00000394593.7:ENST00000532201.5:ENST00000414841.1:ENST00000527156.1:ENST00000441269.2	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	2.24535	3.217785	4.19022	0.0647516	0.0209891	0.179192	0.122348
chr10	68428546	68428645	4639321	0	-	0.353535	(0.35,0.378]	chr10	426660	53	INTRON	INTRON	DNA2	ENSG00000138346.15	ENST00000358410.8:ENST00000551118.6:ENST00000399179.6:ENST00000399180.3:ENST00000440722.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	29	2	2.24535	3.217785	4.19022	0.0647516	0.0209891	0.179192	0.122348
chr14	76209646	76209745	5796559	0	+	0.353535	(0.35,0.378]	chr14	549192	79	UTR3	UTR3:EXON_MRNA:INTRON	GPATCH2L	ENSG00000089916.18	ENST00000261530.12:ENST00000621494.1:ENST00000556675.2:ENST00000556372.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	29	2	2.24535	3.217785	4.19022	0.0647516	0.0209891	0.179192	0.122348
chr6	143191895	143191995	2976503	0	+	0.37	(0.35,0.378]	chr6	279161	14	INTRON	INTRON	AIG1	ENSG00000146416.19	ENST00000367601.8:ENST00000447498.5:ENST00000646199.1:ENST00000357847.9:ENST00000275235.8:ENST00000458219.1	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	2.24535	3.217785	4.19022	0.0647516	0.0209891	0.179192	0.122348
chr7	135974628	135974728	3649445	0	-	0.37	(0.35,0.378]	chr7	339214	226	INTRON	INTRON	MTPN	ENSG00000105887.11	ENST00000393085.4:ENST00000435723.1	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	2.24535	3.217785	4.19022	0.0647516	0.0209891	0.179192	0.122348
chr8	97688450	97688537	3809505	0	+	0.367816	(0.35,0.378]	chr8	352854	5	INTRON	INTRON	MTDH	ENSG00000147649.10	ENST00000336273.8:ENST00000519934.5:ENST00000522313.1	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	2.24535	3.217785	4.19022	0.0647516	0.0209891	0.179192	0.122348
chr8	127903238	127903337	3861144	0	+	0.373737	(0.35,0.378]	chr8	355442	3	INTRON	INTRON	PVT1	ENSG00000249859.13	ENST00000667305.1:ENST00000690350.1:ENST00000653522.1:ENST00000664214.1:ENST00000664139.1:ENST00000661830.1:ENST00000657289.1:ENST00000504719.7:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000656880.1:ENST00000660200.1:ENST00000669132.1:ENST00000657211.1:ENST00000653845.1:ENST00000517525.2:ENST00000665856.1:ENST00000651587.1:ENST00000692980.1:ENST00000666353.1:ENST00000657183.1:ENST00000654324.1:ENST00000658556.1:ENST00000657693.1:ENST00000666080.1:ENST00000667539.1:ENST00000521951.1:ENST00000524165.6:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000664293.1:ENST00000657297.1:ENST00000662410.1:ENST00000670795.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000654091.1:ENST00000523328.6:ENST00000657356.1:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000662061.1:ENST00000667204.1:ENST00000656491.1:ENST00000667714.1:ENST00000654105.1:ENST00000665721.1:ENST00000518528.2:ENST00000669416.1:ENST00000660438.1:ENST00000661160.1:ENST00000659326.1:ENST00000665246.1:ENST00000657384.1:ENST00000666842.1:ENST00000517790.2:ENST00000522963.6:ENST00000654369.1:ENST00000661625.1:ENST00000657596.1:ENST00000664995.1:ENST00000656532.1:ENST00000661988.1:ENST00000670714.1:ENST00000669951.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000656693.1:ENST00000668123.1:ENST00000666776.1:ENST00000664299.1:ENST00000669272.1:ENST00000659912.1:ENST00000670532.1:ENST00000660896.1:ENST00000667149.1:ENST00000656396.1:ENST00000523068.2:ENST00000521122.2:ENST00000520913.2:ENST00000519481.6:ENST00000651568.1:ENST00000669082.1:ENST00000665166.1:ENST00000656948.1:ENST00000671088.1:ENST00000664924.1:ENST00000670204.1:ENST00000652695.1:ENST00000670602.1:ENST00000651664.1:ENST00000517838.6:ENST00000663461.1:ENST00000513868.6:ENST00000670626.1:ENST00000653406.1	lncRNA	lncRNA	lncRNA	lncRNA	1	29	2	2.24535	3.217785	4.19022	0.0647516	0.0209891	0.179192	0.122348
chr1	145655347	145655447	210471	0	+	0.41	(0.408,0.44]	chr1	22991	77	INTRON	INTRON	GPR89A	ENSG00000117262.19	ENST00000313835.14:ENST00000460277.5:ENST00000534502.5:ENST00000462900.2:ENST00000478703.5:ENST00000493684.5:ENST00000465185.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	34	2	2.00768	3.2174050000000003	4.42713	0.035843	0.0173083	0.152216	0.104099
chr1	220003849	220003949	638745	0	-	0.44	(0.408,0.44]	chr1	75239	22	INTRON	INTRON	EPRS1	ENSG00000136628.18	ENST00000366923.8:ENST00000609181.5:ENST00000464052.5:ENST00000477030.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	34	2	2.00768	3.2174050000000003	4.42713	0.035843	0.0173083	0.152216	0.104099
chr10	94569095	94569194	4499855	0	+	0.414141	(0.408,0.44]	chr10	414246	59	INTRON	INTRON	HELLS	ENSG00000119969.15	ENST00000239026.10:ENST00000371332.8:ENST00000348459.10:ENST00000419900.5:ENST00000394036.5:ENST00000394045.5:ENST00000462057.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	34	2	2.00768	3.2174050000000003	4.42713	0.035843	0.0173083	0.152216	0.104099
chr15	41233938	41234038	6003888	0	+	0.44	(0.408,0.44]	chr15	571185	4	SS3_PROX	SS3_PROX:INTRON	CHP1	ENSG00000187446.12	ENST00000558351.5:ENST00000560411.5:ENST00000560784.5:ENST00000392151.6:ENST00000561280.5:ENST00000334660.10:ENST00000560397.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	34	2	2.00768	3.2174050000000003	4.42713	0.035843	0.0173083	0.152216	0.104099
chr2	175084358	175084458	1271483	0	-	0.41	(0.408,0.44]	chr2	134392	32	INTRON	INTRON	ATF2	ENSG00000115966.18	ENST00000345739.9:ENST00000426833.7:ENST00000264110.7:ENST00000409437.5:ENST00000409635.5:ENST00000435004.6:ENST00000428760.5:ENST00000392544.5:ENST00000417080.5:ENST00000456655.5:ENST00000421438.5:ENST00000429579.5:ENST00000415955.5:ENST00000409499.5:ENST00000478905.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	34	2	2.00768	3.2174050000000003	4.42713	0.035843	0.0173083	0.152216	0.104099
chr5	36939133	36939233	2339054	0	+	0.42	(0.408,0.44]	chr5	225949	528	INTRON	INTRON	NIPBL	ENSG00000164190.19	ENST00000282516.13:ENST00000448238.2:ENST00000652901.1	protein_coding	protein_coding	protein_coding	protein_coding	2	34	2	2.00768	3.2174050000000003	4.42713	0.035843	0.0173083	0.152216	0.104099
chr6	37909268	37909368	2857928	0	+	0.44	(0.408,0.44]	chr6	270225	889	INTRON	INTRON	ZFAND3	ENSG00000156639.12	ENST00000287218.9:ENST00000373391.6:ENST00000474522.5	protein_coding	protein_coding	protein_coding	protein_coding	2	34	2	2.00768	3.2174050000000003	4.42713	0.035843	0.0173083	0.152216	0.104099
chr1	42264614	42264693	431725	0	-	0.379747	(0.378,0.408]	chr1	52312	1	SS5_PROX	SS5_PROX:INTRON	FOXJ3	ENSG00000198815.9	ENST00000372573.5:ENST00000372572.5:ENST00000361776.5:ENST00000545068.5:ENST00000361346.6:ENST00000445886.5	protein_coding	protein_coding	protein_coding	protein_coding	2	58	2	3.05502	3.21736	3.3797	0.00689519	0.00154501	0.0717484	0.0362716
chr1	54263946	54264046	462331	0	-	0.4	(0.378,0.408]	chr1	55761	54	INTRON	INTRON	SSBP3	ENSG00000157216.16	ENST00000610401.5:ENST00000357475.9:ENST00000371319.8:ENST00000417664.7:ENST00000533946.6:ENST00000326956.12:ENST00000371320.8:ENST00000426150.5:ENST00000533209.5:ENST00000525990.1:ENST00000528787.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	58	2	3.05502	3.21736	3.3797	0.00689519	0.00154501	0.0717484	0.0362716
chr19	21041861	21041960	7039328	0	+	0.484848	(0.476,0.515]	chr19	701855	52	INTRON	INTRON	ZNF430	ENSG00000118620.13	ENST00000599548.5:ENST00000594110.5:ENST00000261560.10	protein_coding	protein_coding	protein_coding	protein_coding	2	34	2	1.99341	3.217345	4.44128	0.037389	0.0151924	0.155878	0.0994339
chr7	43710099	43710199	3526184	0	-	0.51	(0.476,0.515]	chr7	328779	440	INTRON	INTRON	COA1	ENSG00000106603.20	ENST00000415076.6:ENST00000446330.6:ENST00000446564.5:ENST00000438444.5:ENST00000223336.11:ENST00000310564.10:ENST00000415798.5:ENST00000431651.5:ENST00000451651.5:ENST00000418140.5:ENST00000448704.5:ENST00000470156.1:ENST00000457939.1:ENST00000420441.1:ENST00000478504.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	34	2	1.99341	3.217345	4.44128	0.037389	0.0151924	0.155878	0.0994339
chr7	123743017	123743117	3632601	0	-	0.48	(0.476,0.515]	chr7	337581	334	INTRON	INTRON	WASL	ENSG00000106299.8	ENST00000223023.5	protein_coding	protein_coding	protein_coding	protein_coding	2	34	2	1.99341	3.217345	4.44128	0.037389	0.0151924	0.155878	0.0994339
chr7	156732388	156732487	3686389	0	-	0.494949	(0.476,0.515]	chr7	342011	33	INTRON	INTRON	LMBR1	ENSG00000105983.23	ENST00000353442.10:ENST00000448926.5:ENST00000415428.5:ENST00000454132.5:ENST00000434503.5:ENST00000461603.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	34	2	1.99341	3.217345	4.44128	0.037389	0.0151924	0.155878	0.0994339
chr19	38650757	38650857	7065759	0	+	0.57	(0.515,0.57]	chr19	705486	21	INTRON	INTRON	ACTN4	ENSG00000130402.13	ENST00000252699.7:ENST00000588618.5:ENST00000440400.2:ENST00000424234.7:ENST00000589528.1:ENST00000390009.7:ENST00000495553.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	78	2	2.364	3.21734	4.07068	0.00447856	3.78716e-5	0.0593175	0.00493296
chr21	39230709	39230806	7464691	0	-	0.391753	(0.378,0.408]	chr21	760450	9	INTRON	INTRON	BRWD1	ENSG00000185658.14	ENST00000333229.6:ENST00000342449.8:ENST00000446924.5:ENST00000380800.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	266	2	3.00326	3.217295	3.43133	5.71541e-5	6.22143e-7	0.00658244	4.28486e-4
chr2	69905973	69906073	805411	0	+	0.31	(0.28,0.32]	chr2	89902	5	INTRON	INTRON	MXD1	ENSG00000059728.11	ENST00000435990.5	protein_coding	protein_coding	protein_coding	protein_coding	3	94	2	3.00291	3.217245	3.43158	0.00244075	0.00110829	0.0445752	0.0305035
chr3	196077719	196077817	1897516	0	-	0.357143	(0.35,0.378]	chr3	189991	2	INTRON	INTRON	TFRC	ENSG00000072274.13	ENST00000420415.5:ENST00000360110.9:ENST00000392396.7:ENST00000421258.1:ENST00000464011.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	12	238	2	2.62041	3.21715	3.81389	3.49343e-5	2.44966e-5	0.00471138	0.00406237
chr1	113948248	113948348	191986	0	+	0.53	(0.515,0.57]	chr1	21149	64	INTRON	INTRON	HIPK1	ENSG00000163349.22	ENST00000426820.7:ENST00000626993.2:ENST00000369559.8:ENST00000369558.5:ENST00000369561.8:ENST00000369555.6	protein_coding	protein_coding	protein_coding	protein_coding	5	47	2	1.32981	3.217145	5.10448	0.0640038	0.0010345	0.199279	0.029231300000000002
chr5	131340683	131340783	2485404	0	+	0.46	(0.44,0.476]	chr5	237120	242	INTRON	INTRON	CDC42SE2	ENSG00000158985.14	ENST00000502840.5:ENST00000511432.5:ENST00000506419.5:ENST00000395246.5:ENST00000505065.2:ENST00000504701.5:ENST00000503291.5:ENST00000360515.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	37	2	1.9039	3.21712	4.53034	0.0501498	0.00672609	0.156383	0.0738715
chr1	26844207	26844307	52389	0	+	0.51	(0.476,0.515]	chr1	6697	112	INTRON	INTRON	ZDHHC18	ENSG00000204160.12	ENST00000374142.9:ENST00000374141.6:ENST00000534643.5	protein_coding	protein_coding	protein_coding	protein_coding	4	101	2	3.11021	3.21708	3.32395	5.02606e-4	2.34553e-4	0.020217099999999998	0.0140266
chr16	16554898	16554998	6311411	0	+	0.45	(0.44,0.476]	chr16	604098	549	INTRON	INTRON	ENSG00000260126	ENSG00000260126.2	ENST00000567465.2	lncRNA	lncRNA	lncRNA	lncRNA	4	102	2	3.08877	3.2170699999999997	3.34537	5.52878e-4	2.18713e-4	0.021371	0.0135522
chr17	44056018	44056117	6778288	0	-	0.515152	(0.476,0.515]	chr17	668123	154	INTRON	INTRON	LSM12	ENSG00000161654.10	ENST00000591247.6:ENST00000293406.8:ENST00000585388.2	protein_coding	protein_coding	protein_coding	protein_coding	3	75	2	2.72507	3.216945	3.70882	0.0029369	4.74495e-4	0.0496505	0.0201638
chr11	108062823	108062923	4856275	0	+	0.47	(0.44,0.476]	chr11	452903	75	INTRON	INTRON	CUL5	ENSG00000166266.14	ENST00000393094.7:ENST00000531427.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	56	2	3.17572	3.2168650000000003	3.25801	0.00427037	0.00248185	0.0573912	0.0460771
chr1	17425884	17425984	384847	0	-	0.62	(0.57,1]	chr1	45486	2	SS3_PROX	SS3_PROX:INTRON	RCC2	ENSG00000179051.14	ENST00000375436.9:ENST00000375433.3	protein_coding	protein_coding	protein_coding	protein_coding	4	50	2	2.32017	3.216815	4.11346	0.00488159	1.70324e-5	0.0640618	0.00330681
chr15	64545146	64545246	6044935	0	+	0.41	(0.408,0.44]	chr15	575696	422	INTRON	INTRON	ZNF609	ENSG00000180357.10	ENST00000326648.5:ENST00000558680.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	191	2	3.19994	3.216775	3.23361	3.57504e-5	1.44305e-5	0.00507261	0.00284474
chr1	89551066	89551165	157663	0	+	0.575758	(0.57,1]	chr1	17171	7	INTRON	INTRON	LRRC8B	ENSG00000197147.15	ENST00000330947.7:ENST00000439853.6:ENST00000449440.5:ENST00000640258.1:ENST00000639264.1	protein_coding	protein_coding	protein_coding	protein_coding	4	52	2	3.03019	3.21676	3.40333	9.20604e-4	1.05548e-4	0.0278392	0.00920724
chr2	87456373	87456473	825929	0	+	0.23	[0,0.28]	chr2	92404	4	SS5_PROX	SS5_PROX:INTRON	CYTOR:ENSG00000284879	ENSG00000222041.12:ENSG00000284879.1	ENST00000642796.1:ENST00000643589.1:ENST00000642451.1:ENST00000646386.1:ENST00000644478.1:ENST00000409139.6:ENST00000331944.10:ENST00000644125.1:ENST00000643743.1:ENST00000644577.1:ENST00000643276.1:ENST00000409898.2:ENST00000419680.6:ENST00000645257.1:ENST00000644976.1:ENST00000643070.1:ENST00000646855.1:ENST00000414584.1:ENST00000455131.5:ENST00000646636.1:ENST00000642293.1:ENST00000423846.5:ENST00000644040.1:ENST00000646865.1:ENST00000645138.1	lncRNA	lncRNA	lncRNA	lncRNA	3	107	2	3.01286	3.21673	3.4206	0.00322364	0.00129799	0.0507087	0.0333764
chr1	100884405	100884505	516793	0	-	0.46	(0.44,0.476]	chr1	60617	56	INTRON	INTRON	EXTL2	ENSG00000162694.14	ENST00000535414.5:ENST00000370113.7:ENST00000370114.8:ENST00000450240.2:ENST00000416479.1	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	2.20949	3.21671	4.22393	0.0672585	0.0162322	0.183051	0.109464
chr11	9283569	9283593	4909115	0	-	0.5	(0.476,0.515]	chr11	460128	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	TMEM41B	ENSG00000166471.11	ENST00000524543.5:ENST00000528080.6:ENST00000299596.8:ENST00000611268.4:ENST00000533867.1:ENST00000527813.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	118	2	2.75798	3.21671	3.67544	5.51624e-4	1.21235e-4	0.0216014	0.0094154
chr12	104300780	104300879	5210148	0	+	0.464646	(0.44,0.476]	chr12	493210	93	INTRON	INTRON	TXNRD1	ENSG00000198431.17	ENST00000525566.6:ENST00000526266.5:ENST00000503506.6:ENST00000526691.5:ENST00000531691.5:ENST00000526390.5:ENST00000531689.5:ENST00000529546.5:ENST00000529751.1:ENST00000528079.6:ENST00000526580.5:ENST00000529784.5:ENST00000524698.5:ENST00000527688.5:ENST00000527335.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	27	2	2.20949	3.21671	4.22393	0.0672585	0.0162322	0.183051	0.109464
chr13	41901685	41901785	5581951	0	-	0.45	(0.44,0.476]	chr13	533547	97	INTRON	INTRON	VWA8	ENSG00000102763.18	ENST00000379310.8:ENST00000281496.6	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	2.20949	3.21671	4.22393	0.0672585	0.0162322	0.183051	0.109464
chr13	72768484	72768584	5616296	0	-	0.47	(0.44,0.476]	chr13	535687	3	SS5_PROX	SS5_PROX:INTRON	DIS3	ENSG00000083520.15	ENST00000377767.9:ENST00000377780.8:ENST00000545453.5:ENST00000490646.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	27	2	2.20949	3.21671	4.22393	0.0672585	0.0162322	0.183051	0.109464
chr18	46880205	46880305	6966360	0	-	0.46	(0.44,0.476]	chr18	689510	156	INTRON	INTRON	PIAS2	ENSG00000078043.16	ENST00000585916.6:ENST00000398654.7:ENST00000324794.11:ENST00000545673.5:ENST00000592212.5:ENST00000590127.5:ENST00000592011.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	27	2	2.20949	3.21671	4.22393	0.0672585	0.0162322	0.183051	0.109464
chr19	48327800	48327891	7087418	0	+	0.461538	(0.44,0.476]	chr19	709206	1	SS5_PROX	SS5_PROX:INTRON	EMP3	ENSG00000142227.11	ENST00000599704.5:ENST00000596315.5:ENST00000594198.1:ENST00000270221.11:ENST00000599255.5:ENST00000597279.5:ENST00000593437.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	27	2	2.20949	3.21671	4.22393	0.0672585	0.0162322	0.183051	0.109464
chr19	52091078	52091177	7205822	0	-	0.454545	(0.44,0.476]	chr19	731310	17	INTRON	INTRON	ZNF432:ZNF841	ENSG00000256087.7:ENSG00000197608.12	ENST00000598446.1:ENST00000594440.6:ENST00000426391.6:ENST00000594295.5:ENST00000599430.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	27	2	2.20949	3.21671	4.22393	0.0672585	0.0162322	0.183051	0.109464
chr2	47797916	47798013	777189	0	+	0.443299	(0.44,0.476]	chr2	87426	15	INTRON	INTRON	MSH6	ENSG00000116062.18	ENST00000652107.1:ENST00000445503.5:ENST00000614496.4:ENST00000456246.1:ENST00000234420.11:ENST00000673922.1:ENST00000673637.1:ENST00000540021.6:ENST00000455383.5:ENST00000538136.1:ENST00000411819.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	27	2	2.20949	3.21671	4.22393	0.0672585	0.0162322	0.183051	0.109464
chr2	167908565	167908664	1258888	0	-	0.494949	(0.476,0.515]	chr2	133340	74	INTRON	INTRON	B3GALT1-AS1	ENSG00000235335.3	ENST00000430546.2:ENST00000657553.1:ENST00000670221.1:ENST00000436982.2	lncRNA	lncRNA	lncRNA	lncRNA	5	52	2	1.33919	3.21671	5.09423	0.06316	0.00204588	0.197199	0.04086
chr3	93933683	93933783	1753788	0	-	0.46	(0.44,0.476]	chr3	177829	45	INTRON	INTRON	PROS1	ENSG00000184500.16	ENST00000394236.9:ENST00000648381.1:ENST00000648853.1:ENST00000650591.1:ENST00000348974.5:ENST00000647936.1:ENST00000407433.6:ENST00000649103.1:ENST00000472684.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	27	2	2.20949	3.21671	4.22393	0.0672585	0.0162322	0.183051	0.109464
chr4	184709175	184709274	2304637	0	-	0.464646	(0.44,0.476]	chr4	222921	64	INTRON	INTRON	CENPU	ENSG00000151725.12	ENST00000281453.10:ENST00000510146.5:ENST00000506535.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	27	2	2.20949	3.21671	4.22393	0.0672585	0.0162322	0.183051	0.109464
chr6	106274772	106274871	3177650	0	-	0.444444	(0.44,0.476]	chr6	296175	262	INTRON	INTRON	ATG5	ENSG00000057663.16	ENST00000636437.1:ENST00000636335.1:ENST00000369070.5:ENST00000369076.8:ENST00000635758.2:ENST00000360666.6:ENST00000343245.7:ENST00000646025.1:ENST00000613993.1:ENST00000476518.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	27	2	2.20949	3.21671	4.22393	0.0672585	0.0162322	0.183051	0.109464
chrX	24013170	24013269	7775271	0	-	0.454545	(0.44,0.476]	chrX	794796	61	INTRON	INTRON	KLHL15	ENSG00000174010.10	ENST00000685367.1:ENST00000689334.1:ENST00000328046.8:ENST00000693269.1:ENST00000692681.1:ENST00000684871.1	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	2.20949	3.21671	4.22393	0.0672585	0.0162322	0.183051	0.109464
chrX	44930984	44931084	7649180	0	+	0.3	(0.28,0.32]	chrX	782726	566	INTRON	INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000675440.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000621147.5:ENST00000475233.1:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	100	2	2.14002	3.2166449999999998	4.29327	0.0304107	2.65258e-5	0.130461	0.00405913
chr1	225869016	225869114	646092	0	-	0.530612	(0.515,0.57]	chr1	76514	6	INTRON	INTRON	TMEM63A	ENSG00000196187.12	ENST00000366835.8	protein_coding	protein_coding	protein_coding	protein_coding	2	49	2	3.12663	3.21664	3.30665	0.00374498	0.00213226	0.0562234	0.041756
chr20	17963242	17963341	7320516	0	-	0.575758	(0.57,1]	chr20	745337	4	INTRON	INTRON	SNX5	ENSG00000089006.17	ENST00000377768.7:ENST00000490175.5:ENST00000377759.9:ENST00000431277.5:ENST00000419004.2:ENST00000474883.5:ENST00000469704.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	54	2	2.9315	3.216555	3.50161	9.1984e-4	3.17447e-5	0.0278396	0.00449886
chr3	112544606	112544703	1770943	0	-	0.443299	(0.44,0.476]	chr3	179247	1	INTRON	INTRON	ATG3	ENSG00000144848.11	ENST00000283290.10:ENST00000402314.6:ENST00000495756.5:ENST00000496423.1:ENST00000492886.5:ENST00000465980.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	75	2	3.12298	3.216545	3.31011	0.00259023	4.66209e-4	0.0452934	0.0195589
chr11	94462030	94462129	5018241	0	-	0.393939	(0.378,0.408]	chr11	473375	6	INTRON	INTRON	MRE11	ENSG00000020922.13	ENST00000323929.8:ENST00000407439.7:ENST00000323977.7:ENST00000393241.8	protein_coding	protein_coding	protein_coding	protein_coding	2	58	2	3.10274	3.2165	3.33026	0.00586642	0.00189824	0.0668095	0.0402736
chr3	60260127	60260227	1712215	0	-	0.4	(0.378,0.408]	chr3	176138	1794	INTRON	INTRON	FHIT	ENSG00000189283.10	ENST00000492590.6:ENST00000476844.5:ENST00000468189.5:ENST00000488467.5	protein_coding	protein_coding	protein_coding	protein_coding	2	38	2	1.8252	3.216455	4.60771	0.0619563	0.00567576	0.174514	0.0678837
chr1	36288659	36288759	73578	0	+	0.35	(0.32,0.35]	chr1	9392	2	SS3_PROX	SS3_PROX:INTRON	THRAP3	ENSG00000054118.15	ENST00000469141.6:ENST00000648638.1:ENST00000354618.10	protein_coding	protein_coding	protein_coding	protein_coding	3	47	2	1.97654	3.216415	4.45629	0.0246089	0.0199113	0.120668	0.12011
chr15	65722447	65722547	6209083	0	-	0.35	(0.32,0.35]	chr15	592546	2	SS5_PROX	SS5_PROX:INTRON	DENND4A	ENSG00000174485.16	ENST00000443035.8:ENST00000431932.6:ENST00000635620.2:ENST00000564674.5:ENST00000568515.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	47	2	1.97654	3.216415	4.45629	0.0246089	0.0199113	0.120668	0.12011
chr8	90280887	90280987	3792902	0	+	0.42	(0.408,0.44]	chr8	351786	337	INTRON	INTRON	LINC00534	ENSG00000253394.7	ENST00000662145.1:ENST00000655523.1:ENST00000517400.6:ENST00000658299.1:ENST00000663329.1:ENST00000658342.1:ENST00000523283.6:ENST00000655219.1:ENST00000662692.1:ENST00000667296.1:ENST00000667565.1:ENST00000523406.2:ENST00000659030.1:ENST00000653734.1:ENST00000654785.1:ENST00000524361.5:ENST00000668745.1:ENST00000666641.2:ENST00000661519.1:ENST00000671657.1:ENST00000655123.1:ENST00000663098.1:ENST00000670903.1:ENST00000654946.1	lncRNA	lncRNA	lncRNA	lncRNA	5	121	2	3.04238	3.2163950000000003	3.39041	1.80518e-4	1.54233e-4	0.0121877	0.0106835
chr1	89553645	89553745	157689	0	+	0.29	(0.28,0.32]	chr1	17171	33	INTRON	INTRON	LRRC8B	ENSG00000197147.15	ENST00000330947.7:ENST00000439853.6:ENST00000449440.5:ENST00000640258.1:ENST00000639264.1	protein_coding	protein_coding	protein_coding	protein_coding	2	41	2	2.1895	3.21635	4.2432	0.0479043	0.0227063	0.153019	0.124921
chr5	132935909	132936003	2724990	0	-	0.319149	(0.28,0.32]	chr5	256339	6	INTRON	INTRON	AFF4	ENSG00000072364.13	ENST00000265343.10:ENST00000378595.7:ENST00000491831.5:ENST00000465484.1:ENST00000421773.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	41	2	2.1895	3.21635	4.2432	0.0479043	0.0227063	0.153019	0.124921
chr2	43955288	43955388	1110198	0	-	0.45	(0.44,0.476]	chr2	119070	43	INTRON	INTRON	LRPPRC	ENSG00000138095.20	ENST00000260665.12:ENST00000682308.1:ENST00000683459.1:ENST00000683623.1:ENST00000683125.1:ENST00000683994.1:ENST00000684619.1:ENST00000683833.1:ENST00000682546.1:ENST00000682585.1:ENST00000683220.1:ENST00000683796.1:ENST00000682607.1:ENST00000683590.1:ENST00000684306.1:ENST00000683213.1:ENST00000682779.1:ENST00000682885.1:ENST00000684743.1:ENST00000683346.1:ENST00000683072.1:ENST00000682303.1:ENST00000683329.1:ENST00000682933.1:ENST00000684383.1:ENST00000682480.1:ENST00000684290.1:ENST00000684341.1:ENST00000682595.1:ENST00000683645.1:ENST00000683802.1:ENST00000681961.1:ENST00000683694.1:ENST00000683989.1:ENST00000447246.2:ENST00000409659.6:ENST00000682104.1:ENST00000683934.1:ENST00000681959.1:ENST00000684482.1:ENST00000683082.1:ENST00000467058.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	196	2	2.10757	3.216305	4.32504	0.00118276	7.17218e-7	0.031662	5.11142e-4
chr17	81564553	81564649	6848852	0	-	0.479167	(0.476,0.515]	chr17	678121	7	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	NPLOC4	ENSG00000182446.14	ENST00000331134.11:ENST00000572760.5:ENST00000572346.5:ENST00000573519.5:ENST00000573876.1:ENST00000571714.5:ENST00000572824.1:ENST00000573212.5:ENST00000576713.6:ENST00000374747.9:ENST00000576940.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	89	2	2.65911	3.216225	3.77334	0.00116074	3.52709e-4	0.0314098	0.0174637
chr22	20120994	20121090	7478625	0	+	0.572917	(0.57,1]	chr22	762785	15	INTRON	INTRON	RANBP1	ENSG00000099901.17	ENST00000435265.5:ENST00000432879.5:ENST00000430524.6:ENST00000402752.5:ENST00000488484.1:ENST00000331821.7:ENST00000411892.5:ENST00000416427.5:ENST00000421656.5:ENST00000423859.5:ENST00000418705.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	64	2	2.86696	3.2162100000000002	3.56546	2.88184e-4	2.14398e-5	0.0150627	0.00377331
chr10	86477961	86478061	4658924	0	-	0.53	(0.515,0.57]	chr10	429282	36	INTRON	INTRON	WAPL	ENSG00000062650.20	ENST00000298767.10	protein_coding	protein_coding	protein_coding	protein_coding	3	37	2	1.7492	3.21615	4.6831	0.0382504	0.00471288	0.15832	0.0600108
chr15	84687324	84687424	6251736	0	-	0.34	(0.32,0.35]	chr15	596667	3	SS5_PROX	SS5_PROX:INTRON	SEC11A	ENSG00000140612.14	ENST00000559729.5:ENST00000268220.12:ENST00000560266.5:ENST00000558134.5:ENST00000558217.5:ENST00000455959.7:ENST00000560409.5:ENST00000558196.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	28	2	2.48693	3.21611	3.94529	0.0693433	0.0338094	0.184298	0.146709
chr3	25649661	25649761	1642017	0	-	0.35	(0.32,0.35]	chr3	168598	38	INTRON	INTRON	TOP2B	ENSG00000077097.16	ENST00000264331.9:ENST00000435706.6:ENST00000424225.1	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	2.48693	3.21611	3.94529	0.0693433	0.0338094	0.184298	0.146709
chr3	47658004	47658103	1683810	0	-	0.333333	(0.32,0.35]	chr3	171996	189	INTRON	INTRON	SMARCC1	ENSG00000173473.11	ENST00000254480.10:ENST00000425518.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	28	2	2.48693	3.21611	3.94529	0.0693433	0.0338094	0.184298	0.146709
chr3	185627788	185627888	1585711	0	+	0.35	(0.32,0.35]	chr3	164212	10	INTRON	INTRON	SENP2	ENSG00000163904.13	ENST00000296257.10:ENST00000413407.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	28	2	2.48693	3.21611	3.94529	0.0693433	0.0338094	0.184298	0.146709
chr5	75694154	75694254	2644140	0	-	0.34	(0.32,0.35]	chr5	251371	1	SS5_PROX	SS5_PROX:INTRON	POC5	ENSG00000152359.15	ENST00000428202.7:ENST00000514838.6:ENST00000446329.6:ENST00000510798.5:ENST00000503835.5:ENST00000357564.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	28	2	2.48693	3.21611	3.94529	0.0693433	0.0338094	0.184298	0.146709
chr7	98882224	98882324	3359291	0	+	0.34	(0.32,0.35]	chr7	313369	2	SS5_PROX	SS5_PROX:PRIMIRNA:INTRON	TRRAP:MIR3609	ENSG00000196367.14:ENSG00000266019.1	ENST00000417523.5:ENST00000355540.7:ENST00000359863.8:ENST00000628380.2:ENST00000456197.2:ENST00000446306.7:ENST00000582661.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:primary_miRNA	1	28	2	2.48693	3.21611	3.94529	0.0693433	0.0338094	0.184298	0.146709
chr9	112299413	112299513	4317618	0	-	0.34	(0.32,0.35]	chr9	397079	11	INTRON	INTRON	PTBP3	ENSG00000119314.16	ENST00000334318.10:ENST00000458258.5:ENST00000374257.6:ENST00000374255.6:ENST00000343327.6:ENST00000487997.1:ENST00000210227.4:ENST00000450374.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	28	2	2.48693	3.21611	3.94529	0.0693433	0.0338094	0.184298	0.146709
chrX	74264812	74264911	7841326	0	-	0.333333	(0.32,0.35]	chrX	799728	24	INTRON	INTRON	FTX	ENSG00000230590.12	ENST00000603672.5:ENST00000430772.6:ENST00000602776.6:ENST00000638681.1:ENST00000652319.1:ENST00000661133.1:ENST00000652071.1:ENST00000602812.6:ENST00000651703.1:ENST00000653018.1:ENST00000658448.1:ENST00000662240.1:ENST00000652527.1:ENST00000651451.1:ENST00000657611.1:ENST00000660481.1:ENST00000659574.1:ENST00000661084.1:ENST00000662494.1:ENST00000670936.1:ENST00000602420.6:ENST00000658203.1:ENST00000638985.1:ENST00000691187.1:ENST00000603037.2:ENST00000687056.1:ENST00000654870.2:ENST00000652540.1:ENST00000652331.2:ENST00000652013.1:ENST00000657070.1:ENST00000665069.1:ENST00000651936.1:ENST00000652496.1:ENST00000653874.2:ENST00000661335.1:ENST00000664123.1:ENST00000658439.1:ENST00000666535.1:ENST00000652970.1:ENST00000423992.3:ENST00000665313.2:ENST00000651140.1:ENST00000660100.1:ENST00000693483.1:ENST00000656041.1:ENST00000657327.1:ENST00000664343.1:ENST00000656977.1:ENST00000671343.1:ENST00000659407.1:ENST00000671067.1:ENST00000660829.1:ENST00000671385.1	lncRNA	lncRNA	lncRNA	lncRNA	1	28	2	2.48693	3.21611	3.94529	0.0693433	0.0338094	0.184298	0.146709
chrX	119600483	119600582	7873059	0	-	0.333333	(0.32,0.35]	chrX	801774	75	INTRON	INTRON	NKRF	ENSG00000186416.18	ENST00000304449.8:ENST00000542113.3:ENST00000688521.1	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	2.48693	3.21611	3.94529	0.0693433	0.0338094	0.184298	0.146709
chr7	148855804	148855904	3670478	0	-	0.53	(0.515,0.57]	chr7	340628	81	INTRON	INTRON	EZH2	ENSG00000106462.12	ENST00000683292.1:ENST00000320356.7:ENST00000492143.5:ENST00000478654.5:ENST00000350995.6:ENST00000460911.5:ENST00000683744.1:ENST00000682317.1:ENST00000682263.1:ENST00000684300.1:ENST00000476773.5:ENST00000483967.5:ENST00000498186.5:ENST00000483012.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	65	2	2.804	3.2161049999999998	3.62821	0.00215855	4.12866e-4	0.0417866	0.0181365
chr7	77588046	77588145	3342530	0	+	0.343434	(0.32,0.35]	chr7	311345	21	INTRON	INTRON	PTPN12	ENSG00000127947.16	ENST00000248594.11:ENST00000433369.6:ENST00000415482.6:ENST00000435495.6:ENST00000418110.5:ENST00000522115.6:ENST00000447995.2:ENST00000481154.1:ENST00000494248.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	37	2	1.81328	3.216085	4.61889	0.0615716	0.0166646	0.193423	0.102621
chr9	133361544	133361640	4370291	0	-	0.333333	(0.32,0.35]	chr9	402163	2	UTR3	UTR3:EXON_MRNA	SURF4	ENSG00000148248.14	ENST00000545297.5:ENST00000613129.4:ENST00000618229.4:ENST00000371989.8	protein_coding	protein_coding	protein_coding	protein_coding	2	37	2	1.81328	3.216085	4.61889	0.0615716	0.0166646	0.193423	0.102621
chr12	24831645	24831741	5296725	0	-	0.364583	(0.35,0.378]	chr12	503825	14	INTRON	INTRON	BCAT1	ENSG00000060982.15	ENST00000261192.12:ENST00000538118.5:ENST00000342945.9:ENST00000539282.5:ENST00000539780.5	protein_coding	protein_coding	protein_coding	protein_coding	2	61	2	2.89003	3.2159449999999996	3.54186	0.0122391	8.14353e-4	0.0910127	0.02604
chr3	9998922	9999022	1362091	0	+	0.41	(0.408,0.44]	chr3	143402	47	INTRON	INTRON	EMC3-AS1	ENSG00000180385.9	ENST00000692142.1:ENST00000366264.6:ENST00000693066.1:ENST00000326237.3:ENST00000440568.1:ENST00000424904.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	6	145	2	2.47605	3.21549	3.95493	0.00116417	7.90495e-6	0.0314524	0.00212728
chr14	27512538	27512638	5847977	0	-	0.34	(0.32,0.35]	chr14	556260	1900	INTRON	INTRON	ENSG00000258932	ENSG00000258932.5	ENST00000553392.5:ENST00000554904.5:ENST00000556890.1:ENST00000555797.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	2	66	2	3.07975	3.2154550000000004	3.35116	0.00554235	0.00283808	0.0674105	0.0473151
chr19	55665036	55665135	7101634	0	+	0.424242	(0.408,0.44]	chr19	712540	9	INTRON	INTRON	U2AF2	ENSG00000063244.13	ENST00000450554.6:ENST00000308924.9:ENST00000592874.1:ENST00000590551.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	75	2	2.906	3.2153549999999997	3.52471	0.00131817	0.00112428	0.0333932	0.0306963
chr12	74125668	74125768	5366695	0	-	0.46	(0.44,0.476]	chr12	512080	1831	INTRON	INTRON	LINC02882	ENSG00000251138.7	ENST00000663261.1:ENST00000665907.1:ENST00000669556.1:ENST00000653134.1	lncRNA	lncRNA	lncRNA	lncRNA	6	137	2	2.84842	3.2151899999999998	3.58196	1.57183e-4	6.33388e-5	0.0107517	0.00708877
chr5	76438394	76438493	2392422	0	+	0.393939	(0.378,0.408]	chr5	231107	335	INTRON	INTRON	IQGAP2	ENSG00000145703.17	ENST00000274364.11:ENST00000692467.1:ENST00000514350.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	48	2	1.82258	3.215145	4.60771	0.0341279	0.00567576	0.135102	0.0678837
chr12	122525286	122525382	5442246	0	-	0.583333	(0.57,1]	chr12	520598	17	INTRON	INTRON	RSRC2	ENSG00000111011.18	ENST00000331738.12:ENST00000532695.5:ENST00000433877.6:ENST00000525335.6:ENST00000344591.8:ENST00000527399.3:ENST00000527796.6:ENST00000526560.6:ENST00000527461.5:ENST00000525387.5:ENST00000528279.1:ENST00000525570.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	49	2	2.46083	3.21509	3.96935	0.00255312	4.27649e-5	0.0466386	0.00555805
chr6	12058920	12059020	2814695	0	+	0.39	(0.378,0.408]	chr6	264800	198	INTRON	INTRON	HIVEP1	ENSG00000095951.17	ENST00000491710.5:ENST00000487103.5:ENST00000379388.7:ENST00000627968.2:ENST00000541134.5:ENST00000442081.6:ENST00000478545.1	protein_coding	protein_coding	protein_coding	protein_coding	4	104	2	3.01126	3.21507	3.41888	0.00115997	1.00827e-4	0.0311664	0.00847812
chr2	53946720	53946820	1120332	0	-	0.5	(0.476,0.515]	chr2	120090	41	INTRON	INTRON	PSME4	ENSG00000068878.15	ENST00000404125.6:ENST00000389993.7:ENST00000481518.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	10	237	2	2.74572	3.214785	3.68385	1.96887e-4	2.01862e-7	0.0128602	2.11809e-4
chr9	130078936	130079032	4211208	0	+	0.541667	(0.515,0.57]	chr9	386010	12	INTRON	INTRON	GPR107	ENSG00000148358.20	ENST00000372406.5:ENST00000372410.7:ENST00000347136.11:ENST00000493417.5:ENST00000610997.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	118	2	3.06327	3.21465	3.36603	1.39454e-4	3.32143e-5	0.0107072	0.00461719
chr1	114394871	114394970	526712	0	-	0.252525	[0,0.28]	chr1	62043	22	UTR3	UTR3:EXON_MRNA	TRIM33	ENSG00000197323.12	ENST00000358465.7	protein_coding	protein_coding	protein_coding	protein_coding	3	52	2	1.66929	3.214465	4.75964	0.0537506	0.0232081	0.180803	0.118148
chrX	41218371	41218446	7645438	0	+	0.373333	(0.35,0.378]	chrX	782434	1	CDS	CDS:EXON_MRNA	USP9X	ENSG00000124486.14	ENST00000324545.9:ENST00000378308.7	protein_coding	protein_coding	protein_coding	protein_coding	5	57	2	1.63783	3.2143100000000002	4.79079	0.0250627	0.00846427	0.133086	0.0776969
chr1	205615358	205615457	623333	0	-	0.40404	(0.378,0.408]	chr1	74129	76	UTR3	UTR3:EXON_MRNA:INTRON	ELK4	ENSG00000158711.14	ENST00000616704.4:ENST00000357992.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	29	2	2.46373	3.21422	3.96471	0.0382831	0.032421	0.145026	0.141795
chr16	81591769	81591869	6406469	0	+	0.38	(0.378,0.408]	chr16	615031	959	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	2.46373	3.21422	3.96471	0.0382831	0.032421	0.145026	0.141795
chr9	37134637	37134737	4117799	0	+	0.3	(0.28,0.32]	chr9	375372	73	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000322831.6:ENST00000461038.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	256	2	3.00521	3.214185	3.42316	7.04402e-5	2.52459e-5	0.00751305	0.00394111
chr16	307305	307403	6426401	0	-	0.377551	(0.35,0.378]	chr16	617488	25	INTRON	INTRON	AXIN1	ENSG00000103126.15	ENST00000262320.8:ENST00000461023.5:ENST00000354866.7:ENST00000481769.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	112	2	2.696	3.214125	3.73225	5.46487e-4	4.12892e-4	0.0215463	0.0181365
chr20	47295377	47295475	7348894	0	-	0.387755	(0.378,0.408]	chr20	749330	2	INTRON	INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000467200.6:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000468376.2:ENST00000435836.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	78	2	2.66643	3.21409	3.76175	0.00470023	2.68579e-4	0.0600108	0.0145349
chr17	82263106	82263205	6852724	0	-	0.494949	(0.476,0.515]	chr17	679151	72	INTRON	INTRON	CSNK1D	ENSG00000141551.15	ENST00000398519.9:ENST00000314028.11:ENST00000581241.5:ENST00000392334.6:ENST00000403276.7:ENST00000582844.5:ENST00000580446.1:ENST00000581660.5:ENST00000578194.5:ENST00000579316.5:ENST00000584472.5:ENST00000580061.5:ENST00000585026.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	89	2	2.59304	3.214075	3.83511	0.00158794	2.63754e-4	0.0367961	0.0149561
chrX	11397864	11397964	7761333	0	-	0.38	(0.378,0.408]	chrX	793522	621	INTRON	INTRON	ARHGAP6	ENSG00000047648.23	ENST00000380736.5:ENST00000337414.9:ENST00000495242.5:ENST00000489330.6:ENST00000380718.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	60	2	2.9917	3.214075	3.43645	0.0068789	0.00171162	0.0749442	0.037419
chr19	55200902	55201002	7213386	0	-	0.38	(0.378,0.408]	chr19	732677	4	SS3_PROX	SS3_PROX:INTRON	PTPRH	ENSG00000080031.10	ENST00000376350.8:ENST00000263434.5:ENST00000588559.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	35	2	2.11103	3.21401	4.31699	0.0266911	0.0250408	0.134419	0.12011
chr22	20637710	20637810	7557910	0	-	0.39	(0.378,0.408]	chr22	772926	95	INTRON	INTRON	SMPD4P1	ENSG00000223553.6	ENST00000443839.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	2	35	2	2.11103	3.21401	4.31699	0.0266911	0.0250408	0.134419	0.12011
chr12	55780393	55780493	5332448	0	-	0.44	(0.408,0.44]	chr12	509126	194	INTRON	INTRON	SARNP	ENSG00000205323.9	ENST00000546604.5:ENST00000552884.5:ENST00000336133.8:ENST00000552080.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	92	2	2.15938	3.2137700000000002	4.26816	0.011260300000000001	1.58618e-5	0.0884004	0.00300937
chr19	10191040	10191140	7134841	0	-	0.59	(0.57,1]	chr19	719261	66	INTRON	INTRON	DNMT1	ENSG00000130816.17	ENST00000340748.8:ENST00000359526.9:ENST00000592705.5:ENST00000679103.1:ENST00000677634.1:ENST00000676820.1:ENST00000677250.1:ENST00000677013.1:ENST00000677685.1:ENST00000676610.1:ENST00000678804.1:ENST00000679313.1:ENST00000677946.1:ENST00000586988.5:ENST00000588952.5:ENST00000588118.5:ENST00000592342.5:ENST00000592054.5:ENST00000586800.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	57	2	2.66218	3.2137700000000002	3.76536	3.14338e-4	1.35835e-4	0.0163194	0.0100405
chr18	2991955	2992054	6944888	0	-	0.353535	(0.35,0.378]	chr18	686840	92	INTRON	INTRON	LPIN2	ENSG00000101577.10	ENST00000261596.8:ENST00000677752.1	protein_coding	protein_coding	protein_coding	protein_coding	2	37	2	2.23043	3.213765	4.1971	0.0367539	0.0187487	0.138959	0.117523
chr4	126467241	126467341	2235381	0	-	0.37	(0.35,0.378]	chr4	219023	17	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	2	37	2	2.23043	3.213765	4.1971	0.0367539	0.0187487	0.138959	0.117523
chr9	5018766	5018866	4096158	0	+	0.37	(0.35,0.378]	chr9	373235	324	INTRON	INTRON	JAK2	ENSG00000096968.14	ENST00000636127.1:ENST00000476574.5:ENST00000381652.4	protein_coding	protein_coding	protein_coding	protein_coding	2	37	2	2.23043	3.213765	4.1971	0.0367539	0.0187487	0.138959	0.117523
chr6	4859100	4859200	2791690	0	+	0.4	(0.378,0.408]	chr6	263602	224	INTRON	INTRON	CDYL	ENSG00000153046.18	ENST00000328908.9:ENST00000491864.1:ENST00000440139.5:ENST00000483019.1:ENST00000397588.8:ENST00000472453.5:ENST00000449732.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	39	2	2.00398	3.213735	4.42349	0.0393906	0.00992961	0.143072	0.0877296
chr6	34642800	34642900	3085678	0	-	0.43	(0.408,0.44]	chr6	288679	355	INTRON	INTRON	ILRUN	ENSG00000196821.10	ENST00000374026.7:ENST00000374023.8:ENST00000374021.1	protein_coding	protein_coding	protein_coding	protein_coding	6	116	2	1.9588699999999999	3.213725	4.46858	0.00847845	4.5816e-6	0.0778146	0.00144313
chr2	42285768	42285845	759668	0	+	0.402597	(0.378,0.408]	chr2	86181	1	SS3_PROX	SS3_PROX:INTRON	EML4	ENSG00000143924.19	ENST00000318522.10:ENST00000402711.6:ENST00000401738.3:ENST00000480320.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	106	2	2.57351	3.21371	3.85391	7.32287e-4	2.84248e-4	0.0246502	0.015495
chr1	162574886	162574985	238452	0	+	0.30303	(0.28,0.32]	chr1	28704	82	INTRON	INTRON	UAP1	ENSG00000117143.14	ENST00000367925.6:ENST00000367926.9	protein_coding	protein_coding	protein_coding	protein_coding	3	48	2	1.76378	3.213685	4.66359	0.0395495	0.0193496	0.161534	0.108861
chr2	20287665	20287764	1076140	0	-	0.434343	(0.408,0.44]	chr2	114976	38	INTRON	INTRON	PUM2	ENSG00000055917.16	ENST00000338086.9:ENST00000361078.7:ENST00000440577.5	protein_coding	protein_coding	protein_coding	protein_coding	6	145	2	3.03168	3.213635	3.39559	2.56148e-4	1.84129e-5	0.0148345	0.00328489
chr6	35835108	35835205	3087941	0	-	0.402062	(0.378,0.408]	chr6	288803	23	UTR3	UTR3:EXON_MRNA	SRPK1	ENSG00000096063.16	ENST00000373825.7:ENST00000423325.6:ENST00000346162.10:ENST00000361690.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	21	498	2	3.12428	3.2136250000000004	3.30297	2.23029e-6	1.92149e-7	0.00104022	2.04387e-4
chr17	19967818	19967918	6741992	0	-	0.45	(0.44,0.476]	chr17	661938	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	AKAP10	ENSG00000108599.15	ENST00000225737.11:ENST00000395536.7:ENST00000582611.5:ENST00000572155.1:ENST00000572341.5:ENST00000576896.5:ENST00000571858.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	103	2	2.29258	3.21358	4.13458	0.00279559	6.18626e-5	0.0488779	0.00694613
chr8	47894184	47894283	3945069	0	-	0.484848	(0.476,0.515]	chr8	361823	4	INTRON	INTRON	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7	protein_coding	protein_coding	protein_coding	protein_coding	8	182	2	2.91808	3.21352	3.50896	4.52733e-5	1.63082e-5	0.00547142	0.00324999
chr16	75384730	75384829	6528805	0	-	0.353535	(0.35,0.378]	chr16	632317	36	INTRON	INTRON	CFDP1	ENSG00000153774.9	ENST00000283882.4:ENST00000612761.1:ENST00000569341.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	49	2	1.4414	3.213505	4.98561	0.0629423	0.00474226	0.196658	0.0600445
chr6	4868497	4868597	2791784	0	+	0.31	(0.28,0.32]	chr6	263602	318	INTRON	INTRON	CDYL	ENSG00000153046.18	ENST00000328908.9:ENST00000491864.1:ENST00000440139.5:ENST00000483019.1:ENST00000397588.8:ENST00000472453.5:ENST00000449732.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	32	2	2.18975	3.21347	4.23719	0.0776042	0.0264147	0.196285	0.133676
chr9	131411926	131412026	4217148	0	+	0.44	(0.408,0.44]	chr9	386720	173	INTRON	INTRON	PRRC2B	ENSG00000288701.1	ENST00000682525.1:ENST00000684596.1:ENST00000683519.1:ENST00000682501.1	protein_coding	protein_coding	protein_coding	protein_coding	5	121	2	2.81829	3.213285	3.60828	7.33803e-4	3.18952e-5	0.0249226	0.00450719
chr6	159752567	159752665	3022648	0	+	0.316327	(0.28,0.32]	chr6	281925	22	INTRON	INTRON	WTAP	ENSG00000146457.16	ENST00000358372.8:ENST00000650096.1:ENST00000621533.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	70	2	3.16101	3.21326	3.26551	0.0061861	0.0030714	0.0677395	0.0509893
chr1	167257220	167257319	245215	0	+	0.313131	(0.28,0.32]	chr1	29255	49	INTRON	INTRON	POU2F1	ENSG00000143190.23	ENST00000559038.5:ENST00000367866.7:ENST00000557909.5:ENST00000271411.8:ENST00000429375.6:ENST00000560232.6:ENST00000442313.5:ENST00000367865.5:ENST00000492850.5:ENST00000541643.7:ENST00000648671.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	39	2	1.83771	3.2132300000000003	4.58875	0.0591725	0.0230574	0.189982	0.118056
chr11	73719963	73720058	4985378	0	-	0.294737	(0.28,0.32]	chr11	470880	7	INTRON	INTRON	RAB6A	ENSG00000175582.20	ENST00000310653.10:ENST00000336083.8:ENST00000541973.5:ENST00000536566.5:ENST00000541588.5:ENST00000545625.5:ENST00000540771.5:ENST00000537446.5:ENST00000400470.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	39	2	1.83771	3.2132300000000003	4.58875	0.0591725	0.0230574	0.189982	0.118056
chr12	11140230	11140329	5269200	0	-	0.313131	(0.28,0.32]	chr12	502262	57	INTRON	INTRON	ENSG00000275778:PRH1	ENSG00000275778.2:ENSG00000231887.8	ENST00000536668.2:ENST00000535024.6:ENST00000541977.5:ENST00000546265.1:ENST00000541175.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	39	2	1.83771	3.2132300000000003	4.58875	0.0591725	0.0230574	0.189982	0.118056
chrX	23735212	23735298	7773786	0	-	0.313953	(0.28,0.32]	chrX	794679	5	INTRON	INTRON	ACOT9	ENSG00000123130.17	ENST00000379303.10:ENST00000336430.11:ENST00000379295.5:ENST00000494361.5:ENST00000492081.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	39	2	1.83771	3.2132300000000003	4.58875	0.0591725	0.0230574	0.189982	0.118056
chrX	101125321	101125420	7694411	0	+	0.30303	(0.28,0.32]	chrX	787368	42	INTRON	INTRON	CENPI	ENSG00000102384.14	ENST00000684367.1:ENST00000423383.3:ENST00000682095.1:ENST00000372927.5:ENST00000372926.5	protein_coding	protein_coding	protein_coding	protein_coding	2	39	2	1.83771	3.2132300000000003	4.58875	0.0591725	0.0230574	0.189982	0.118056
chr1	8771721	8771821	373325	0	-	0.55	(0.515,0.57]	chr1	43549	180	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000656437.1:ENST00000659924.1	protein_coding	protein_coding	protein_coding	protein_coding	2	31	2	2.11313	3.213195	4.31326	0.0256725	0.0141817	0.133676	0.0959618
chr12	70271448	70271547	5166712	0	+	0.525253	(0.515,0.57]	chr12	489374	268	INTRON	INTRON	CNOT2	ENSG00000111596.14	ENST00000547780.5:ENST00000418359.7:ENST00000552319.5:ENST00000550160.5:ENST00000551661.5:ENST00000551132.5:ENST00000553078.5:ENST00000548021.5:ENST00000550641.6:ENST00000229195.8:ENST00000552915.5:ENST00000549443.5:ENST00000548741.5:ENST00000552483.5:ENST00000552422.5:ENST00000551179.1:ENST00000547321.5:ENST00000553020.5:ENST00000548159.5:ENST00000549750.5:ENST00000551043.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	31	2	2.11313	3.213195	4.31326	0.0256725	0.0141817	0.133676	0.0959618
chr3	195408310	195408410	1895568	0	-	0.52	(0.515,0.57]	chr3	189693	158	INTRON	INTRON	ACAP2	ENSG00000114331.16	ENST00000326793.11:ENST00000635383.1:ENST00000480906.5:ENST00000481463.5:ENST00000439666.1:ENST00000447662.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	31	2	2.11313	3.213195	4.31326	0.0256725	0.0141817	0.133676	0.0959618
chr4	24536650	24536750	2118519	0	-	0.2	[0,0.28]	chr4	209198	2	SS5_PROX	SS5_PROX:INTRON	DHX15	ENSG00000109606.13	ENST00000336812.5:ENST00000508032.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	54	2	1.88025	3.213175	4.5461	0.0365918	0.029906	0.142135	0.138959
chr6	26890594	26890694	3071610	0	-	0.36	(0.35,0.378]	chr6	285551	10	INTRON	INTRON	GUSBP2	ENSG00000241549.8	ENST00000479900.5:ENST00000463434.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	6	60	2	1.26902	3.2131250000000002	5.15723	0.0635011	0.00272706	0.19815	0.0467523
chr1	246906553	246906653	681704	0	-	0.41	(0.408,0.44]	chr1	80017	5	INTRON	INTRON	AHCTF1	ENSG00000153207.16	ENST00000648844.2:ENST00000326225.3:ENST00000366508.5	protein_coding	protein_coding	protein_coding	protein_coding	7	153	2	2.73509	3.2130900000000002	3.69109	1.36315e-4	3.63725e-5	0.010058	0.00511252
chr5	34184350	34184448	2599928	0	-	0.408163	(0.378,0.408]	chr5	247053	11	INTRON	INTRON	GUSBP18	ENSG00000215158.9	ENST00000514048.5:ENST00000507274.1:ENST00000508395.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	4	48	2	1.6165	3.2130900000000002	4.80968	0.0374185	0.00679828	0.155878	0.0711802
chr19	4411154	4411253	7001848	0	+	0.40404	(0.378,0.408]	chr19	694523	10	INTRON	INTRON	CHAF1A	ENSG00000167670.16	ENST00000301280.10:ENST00000587739.1	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	2.60296	3.21295	3.82294	0.044228	0.0267851	0.162255	0.123349
chr5	12580836	12580936	2318642	0	+	0.39	(0.378,0.408]	chr5	224776	54	INTRON	INTRON	LINC01194	ENSG00000248131.6	ENST00000513051.6:ENST00000664069.1:ENST00000505196.1:ENST00000505877.5	lncRNA	lncRNA	lncRNA	lncRNA	1	30	2	2.60296	3.21295	3.82294	0.044228	0.0267851	0.162255	0.123349
chr5	134875495	134875595	2491440	0	+	0.53	(0.515,0.57]	chr5	238045	1	SS5_PROX	SS5_PROX:INTRON	TXNDC15	ENSG00000113621.15	ENST00000358387.9:ENST00000511070.5:ENST00000506916.1:ENST00000507024.5:ENST00000508810.1:ENST00000508779.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	36	2	2.38476	3.21281	4.04086	0.0197045	0.0110593	0.120063	0.0873897
chr12	64440509	64440608	5153270	0	+	0.323232	(0.32,0.35]	chr12	487839	8	INTRON	INTRON	XPOT	ENSG00000184575.12	ENST00000332707.10	protein_coding	protein_coding	protein_coding	protein_coding	2	65	2	2.84812	3.212715	3.57731	0.0147575	7.67492e-4	0.0983813	0.0254532
chr2	222940897	222940996	1022041	0	+	0.434343	(0.408,0.44]	chr2	109357	59	INTRON	INTRON	ACSL3	ENSG00000123983.15	ENST00000392066.7:ENST00000407441.5:ENST00000680251.1:ENST00000679541.1:ENST00000681906.1:ENST00000679545.1:ENST00000679932.1:ENST00000680100.1:ENST00000680475.1:ENST00000680525.1:ENST00000680420.1:ENST00000681326.1:ENST00000681292.1:ENST00000680395.1:ENST00000680736.1:ENST00000680147.1:ENST00000357430.8:ENST00000681009.1:ENST00000679514.1:ENST00000681697.1:ENST00000680921.1:ENST00000681383.1:ENST00000679558.1:ENST00000680684.1:ENST00000680424.1:ENST00000495541.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	211	2	2.98794	3.2126799999999998	3.43742	5.50689e-5	3.61345e-6	0.0065165	0.00123826
chr7	128538928	128539028	3407433	0	+	0.59	(0.57,1]	chr7	318333	48	INTRON	INTRON	ENSG00000280828	ENSG00000280828.1	ENST00000479267.2	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	5	60	2	3.07764	3.212575	3.34751	0.00122677	1.92994e-5	0.0320791	0.00337681
chr15	77996670	77996769	6237763	0	-	0.363636	(0.35,0.378]	chr15	595325	18	UTR3	UTR3:EXON_MRNA:INTRON	TBC1D2B	ENSG00000167202.12	ENST00000465531.1:ENST00000300584.8:ENST00000409931.7:ENST00000418039.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	82	2	2.76353	3.2125199999999996	3.66151	0.00343059	4.717e-4	0.0517761	0.0196294
chr10	87903979	87904078	4483337	0	+	0.444444	(0.44,0.476]	chr10	412570	95	INTRON	INTRON	PTEN	ENSG00000171862.12	ENST00000688308.1:ENST00000693560.1:ENST00000371953.8:ENST00000688158.1:ENST00000686459.1:ENST00000688922.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	56	2	3.2029	3.21241	3.22192	0.00360821	0.00308681	0.0533855	0.0510391
chr6	30323134	30323233	3076958	0	-	0.454545	(0.44,0.476]	chr6	286157	30	INTRON	INTRON	HCG18	ENSG00000231074.10	ENST00000665953.1:ENST00000670397.1:ENST00000659132.1:ENST00000659836.1:ENST00000669374.1:ENST00000653541.1:ENST00000670071.1:ENST00000666294.1:ENST00000657247.1:ENST00000654996.1:ENST00000653301.1:ENST00000658695.1:ENST00000664861.1:ENST00000668974.1:ENST00000654915.1:ENST00000687430.1:ENST00000656629.1:ENST00000602550.5:ENST00000687815.1:ENST00000449544.6:ENST00000426882.6:ENST00000438412.6:ENST00000602698.6:ENST00000454129.5:ENST00000444126.5:ENST00000602290.2:ENST00000412685.8:ENST00000602861.6:ENST00000454269.6:ENST00000686575.1:ENST00000687471.1:ENST00000691282.1:ENST00000413358.6:ENST00000602498.1	lncRNA	lncRNA	lncRNA	lncRNA	2	56	2	3.2029	3.21241	3.22192	0.00360821	0.00308681	0.0533855	0.0510391
chr12	64617544	64617644	5155068	0	+	0.48	(0.476,0.515]	chr12	488093	60	INTRON	INTRON	RASSF3	ENSG00000153179.13	ENST00000637125.1:ENST00000542104.6:ENST00000283172.8:ENST00000336061.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	36	2	1.72558	3.21238	4.69918	0.0767648	0.00400966	0.196164	0.057767
chr15	23026705	23026801	6120597	0	-	0.479167	(0.476,0.515]	chr15	582785	1	SS5_PROX	SS5_PROX:INTRON	TUBGCP5	ENSG00000275835.5	ENST00000614508.4:ENST00000615383.5:ENST00000620435.4:ENST00000612085.4:ENST00000622507.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	36	2	1.72558	3.21238	4.69918	0.0767648	0.00400966	0.196164	0.057767
chr16	81563077	81563177	6406182	0	+	0.51	(0.476,0.515]	chr16	615031	672	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6	protein_coding	protein_coding	protein_coding	protein_coding	2	36	2	1.72558	3.21238	4.69918	0.0767648	0.00400966	0.196164	0.057767
chr1	150488150	150488246	222841	0	+	0.416667	(0.408,0.44]	chr1	25122	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	TARS2	ENSG00000143374.18	ENST00000369054.6:ENST00000369064.8:ENST00000606933.5:ENST00000369053.3:ENST00000369051.7:ENST00000479372.1:ENST00000467982.6:ENST00000466989.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	91	2	2.45395	3.212345	3.97074	0.00366321	8.66152e-5	0.0535094	0.00783027
chr4	75795456	75795556	1975236	0	+	0.35	(0.32,0.35]	chr4	198009	1	SS5_PROX	SS5_PROX:INTRON	USO1	ENSG00000138768.15	ENST00000514213.7:ENST00000264904.8	protein_coding	protein_coding	protein_coding	protein_coding	2	37	2	1.88468	3.21228	4.53988	0.0515071	0.0202178	0.176696	0.109913
chr7	102369855	102369955	3371133	0	+	0.33	(0.32,0.35]	chr7	315430	34	INTRON	INTRON	PRKRIP1:ENSG00000239969	ENSG00000128563.13:ENSG00000239969.6	ENST00000477886.5:ENST00000469763.5:ENST00000482549.5:ENST00000496391.5:ENST00000484974.5:ENST00000492837.1:ENST00000482465.5	protein_coding	protein_coding	protein_coding:transcribed_unprocessed_pseudogene	protein_coding:processed_transcript	2	37	2	1.88468	3.21228	4.53988	0.0515071	0.0202178	0.176696	0.109913
chr16	89592539	89592637	6421106	0	+	0.530612	(0.515,0.57]	chr16	616407	9	INTRON	INTRON	CPNE7	ENSG00000178773.15	ENST00000319518.13:ENST00000268720.9:ENST00000529800.5:ENST00000568977.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	56	2	1.82788	3.21209	4.5963	0.0123396	0.00370287	0.0914341	0.0561162
chr7	66702475	66702575	3325092	0	+	0.46	(0.44,0.476]	chr7	309221	169	INTRON	INTRON	RABGEF1	ENSG00000154710.18	ENST00000607882.5	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	4	100	2	2.94373	3.212085	3.48044	0.00143431	6.78832e-5	0.0340925	0.00682671
chr15	80069881	80069980	6071135	0	+	0.393939	(0.378,0.408]	chr15	578304	88	INTRON	INTRON	ZFAND6	ENSG00000086666.19	ENST00000613266.4:ENST00000561060.5:ENST00000559157.5:ENST00000261749.11:ENST00000561012.5:ENST00000564367.5:ENST00000558494.5:ENST00000618205.4:ENST00000560470.5	protein_coding	protein_coding	protein_coding	protein_coding	5	125	2	2.71418	3.212055	3.70993	0.00126468	1.82503e-5	0.0325134	0.0032732
chr1	32806181	32806281	416054	0	-	0.28	[0,0.28]	chr1	50207	3	SS5_PROX	SS5_PROX:INTRON	YARS1	ENSG00000134684.13	ENST00000373477.9:ENST00000676297.1:ENST00000674654.1:ENST00000674629.1:ENST00000675785.2:ENST00000481895.6:ENST00000616261.2:ENST00000470377.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	79	2	3.04867	3.2119850000000003	3.3753	0.0104221	0.00242466	0.085482	0.0454587
chr12	62562588	62562686	5152149	0	+	0.255102	[0,0.28]	chr12	487602	11	INTRON	INTRON	MON2	ENSG00000061987.16	ENST00000641654.1:ENST00000546600.5:ENST00000393630.8:ENST00000547095.5:ENST00000552738.5:ENST00000393629.6:ENST00000551307.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	55	2	1.95669	3.211975	4.46726	0.0427997	0.0237518	0.148082	0.129075
chr11	85661306	85661405	5013445	0	-	0.282828	(0.28,0.32]	chr11	472883	37	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	CREBZF	ENSG00000137504.15	ENST00000682836.1:ENST00000527447.2:ENST00000490820.2:ENST00000528561.5:ENST00000260058.9:ENST00000531515.5:ENST00000534224.1:ENST00000525639.1:ENST00000527529.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	15	417	2	2.93883	3.21195	3.48507	8.83592e-6	7.57622e-6	0.00228471	0.00196742
chr4	82893699	82893798	2180137	0	-	0.252525	[0,0.28]	chr4	214415	8	EXON_LNCRNA	EXON_LNCRNA:INTRON	SEC31A:THAP9-AS1	ENSG00000138674.17:ENSG00000251022.6	ENST00000355196.6:ENST00000503210.5:ENST00000507676.5:ENST00000506495.5:ENST00000507051.1:ENST00000504520.6:ENST00000504792.6	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	5	176	2	2.61561	3.211855	3.8081	0.00342598	2.76236e-5	0.0517761	0.00415129
chr18	3458134	3458231	6867188	0	+	0.309278	(0.28,0.32]	chr18	680349	3	UTR3	UTR3:EXON_MRNA	TGIF1	ENSG00000177426.22	ENST00000401449.5:ENST00000548489.6:ENST00000618001.4:ENST00000405385.7:ENST00000407501.6:ENST00000343820.10:ENST00000330513.10:ENST00000400167.6:ENST00000472042.1	protein_coding	protein_coding	protein_coding	protein_coding	6	176	2	2.67465	3.2118200000000003	3.74899	0.00102091	2.50202e-5	0.029231300000000002	0.00392664
chr1	246931028	246931128	681954	0	-	0.52	(0.515,0.57]	chr1	80045	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	AHCTF1	ENSG00000153207.16	ENST00000648844.2:ENST00000326225.3:ENST00000366508.5	protein_coding	protein_coding	protein_coding	protein_coding	1	25	2	2.52504	3.2118	3.89856	0.029342	0.0280943	0.137011	0.128055
chr11	108204320	108204420	5035003	0	-	0.52	(0.515,0.57]	chr11	474461	65	INTRON	INTRON	NPAT	ENSG00000149308.17	ENST00000278612.9:ENST00000610253.5:ENST00000531384.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	25	2	2.52504	3.2118	3.89856	0.029342	0.0280943	0.137011	0.128055
chr21	43913681	43913781	7414277	0	+	0.55	(0.515,0.57]	chr21	755698	93	INTRON	INTRON	AGPAT3	ENSG00000160216.21	ENST00000291572.13:ENST00000448287.5:ENST00000398061.5:ENST00000327505.6	protein_coding	protein_coding	protein_coding	protein_coding	1	25	2	2.52504	3.2118	3.89856	0.029342	0.0280943	0.137011	0.128055
chr7	135662794	135662894	3429282	0	+	0.52	(0.515,0.57]	chr7	319865	2	SS5_PROX	SS5_PROX:INTRON	STMP1	ENSG00000243317.8	ENST00000509448.5:ENST00000507606.3:ENST00000515197.2:ENST00000422968.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	25	2	2.52504	3.2118	3.89856	0.029342	0.0280943	0.137011	0.128055
chr6	167833520	167833620	3034403	0	+	0.33	(0.32,0.35]	chr6	282711	52	INTRON	INTRON	AFDN	ENSG00000130396.21	ENST00000683244.1:ENST00000400825.8:ENST00000351017.9:ENST00000344191.8:ENST00000392112.5:ENST00000392108.7:ENST00000400824.8:ENST00000400822.7:ENST00000447894.6:ENST00000366809.6:ENST00000366806.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	39	2	2.25173	3.2117699999999996	4.17181	0.04531	0.0180122	0.149888	0.114436
chr1	161328897	161328997	234683	0	+	0.48	(0.476,0.515]	chr1	28275	4	SS5_PROX	SS5_PROX:INTRON	SDHC	ENSG00000143252.16	ENST00000367975.7:ENST00000342751.8:ENST00000432287.6:ENST00000513009.5:ENST00000392169.6:ENST00000504963.5:ENST00000470743.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	27	2	2.3223	3.211715	4.10113	0.0519312	0.0226984	0.159306	0.124921
chr10	74361040	74361140	4457871	0	+	0.5	(0.476,0.515]	chr10	411566	214	INTRON	INTRON	ADK	ENSG00000156110.15	ENST00000672429.1:ENST00000539909.6:ENST00000286621.7:ENST00000673352.1:ENST00000673310.1:ENST00000672920.1:ENST00000672394.1:ENST00000372734.5:ENST00000673027.1:ENST00000541550.6:ENST00000672604.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	27	2	2.3223	3.211715	4.10113	0.0519312	0.0226984	0.159306	0.124921
chr16	74631257	74631357	6525437	0	-	0.48	(0.476,0.515]	chr16	631870	3	SS3_PROX	SS3_PROX:INTRON	RFWD3	ENSG00000168411.14	ENST00000361070.9:ENST00000571750.5:ENST00000575154.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	27	2	2.3223	3.211715	4.10113	0.0519312	0.0226984	0.159306	0.124921
chr17	36596297	36596395	6602372	0	+	0.479592	(0.476,0.515]	chr17	642621	1	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	DHRS11	ENSG00000278535.5	ENST00000618403.5:ENST00000611337.4:ENST00000612538.1:ENST00000612205.1:ENST00000615432.4:ENST00000610443.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	27	2	2.3223	3.211715	4.10113	0.0519312	0.0226984	0.159306	0.124921
chr19	2146962	2147062	7115506	0	-	0.5	(0.476,0.515]	chr19	715270	79	INTRON	INTRON	AP3D1	ENSG00000065000.19	ENST00000643116.3:ENST00000345016.9:ENST00000643010.1:ENST00000591284.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	27	2	2.3223	3.211715	4.10113	0.0519312	0.0226984	0.159306	0.124921
chr19	5640596	5640695	7005472	0	+	0.50505	(0.476,0.515]	chr19	694957	138	INTRON	INTRON	SAFB	ENSG00000160633.13	ENST00000589863.5:ENST00000588852.2:ENST00000591666.5:ENST00000292123.9:ENST00000592224.5:ENST00000586934.5:ENST00000454510.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	27	2	2.3223	3.211715	4.10113	0.0519312	0.0226984	0.159306	0.124921
chr19	45850155	45850252	7193730	0	-	0.505155	(0.476,0.515]	chr19	728642	9	INTRON	INTRON	SYMPK	ENSG00000125755.19	ENST00000245934.12:ENST00000593504.5:ENST00000600237.5:ENST00000599460.5:ENST00000599814.5:ENST00000598896.5:ENST00000602061.5:ENST00000598059.5:ENST00000594293.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	27	2	2.3223	3.211715	4.10113	0.0519312	0.0226984	0.159306	0.124921
chr19	49164554	49164652	7089100	0	+	0.5	(0.476,0.515]	chr19	709755	48	INTRON	INTRON	TRPM4	ENSG00000130529.16	ENST00000598691.5:ENST00000598697.5:ENST00000252826.10:ENST00000595519.5:ENST00000427978.6:ENST00000598502.5:ENST00000596338.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	27	2	2.3223	3.211715	4.10113	0.0519312	0.0226984	0.159306	0.124921
chr7	101929954	101930054	3367492	0	+	0.51	(0.476,0.515]	chr7	315225	134	INTRON	INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000497815.5:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000558469.5:ENST00000560541.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	27	2	2.3223	3.211715	4.10113	0.0519312	0.0226984	0.159306	0.124921
chr9	123855968	123856068	4345283	0	-	0.48	(0.476,0.515]	chr9	399130	576	INTRON	INTRON	DENND1A	ENSG00000119522.17	ENST00000373624.6:ENST00000394215.7:ENST00000373620.7:ENST00000373618.1	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	2.3223	3.211715	4.10113	0.0519312	0.0226984	0.159306	0.124921
chr9	131461716	131461814	4217657	0	+	0.510204	(0.476,0.515]	chr9	386778	20	INTRON	INTRON	PRRC2B	ENSG00000288701.1	ENST00000684596.1:ENST00000683519.1:ENST00000682501.1:ENST00000684736.1	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	2.3223	3.211715	4.10113	0.0519312	0.0226984	0.159306	0.124921
chr20	50088439	50088539	7353706	0	-	0.38	(0.378,0.408]	chr20	749863	38	INTRON	INTRON	UBE2V1	ENSG00000244687.13	ENST00000340309.7:ENST00000371677.7:ENST00000415862.6:ENST00000557021.5:ENST00000617119.4:ENST00000625172.3:ENST00000396059.7:ENST00000371674.8:ENST00000371657.9:ENST00000483534.5:ENST00000492371.6:ENST00000486653.5:ENST00000490555.1:ENST00000493090.5:ENST00000467839.5:ENST00000472923.5:ENST00000432266.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	49	2	1.76	3.21169	4.66338	0.023484	0.0103469	0.128531	0.0850389
chr19	10190541	10190641	7134836	0	-	0.51	(0.476,0.515]	chr19	719261	61	INTRON	INTRON	DNMT1	ENSG00000130816.17	ENST00000340748.8:ENST00000359526.9:ENST00000592705.5:ENST00000679103.1:ENST00000677634.1:ENST00000676820.1:ENST00000677250.1:ENST00000677013.1:ENST00000677685.1:ENST00000676610.1:ENST00000678804.1:ENST00000679313.1:ENST00000677946.1:ENST00000586988.5:ENST00000588952.5:ENST00000588118.5:ENST00000592342.5:ENST00000592054.5:ENST00000586800.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	37	2	1.99197	3.21145	4.43093	0.039572	0.00931369	0.143072	0.0855292
chr1	54383782	54383882	463535	0	-	0.64	(0.57,1]	chr1	55784	271	INTRON	INTRON	SSBP3	ENSG00000157216.16	ENST00000610401.5:ENST00000357475.9:ENST00000371319.8:ENST00000417664.7:ENST00000533946.6:ENST00000371320.8:ENST00000525990.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	76	2	3.09993	3.21144	3.32295	6.63721e-5	1.45618e-5	0.00675077	0.00305713
chr16	222945	223045	6426125	0	-	0.33	(0.32,0.35]	chr16	617444	18	INTRON	INTRON	LUC7L	ENSG00000007392.17	ENST00000337351.8:ENST00000426094.5:ENST00000397783.5:ENST00000629543.2:ENST00000490762.5:ENST00000293872.13:ENST00000419516.5:ENST00000397780.5:ENST00000418978.5:ENST00000430864.5:ENST00000443357.5:ENST00000494366.5:ENST00000469109.1:ENST00000428363.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	45	2	1.72898	3.21139	4.6938	0.0425433	0.0137794	0.161951	0.0949306
chr22	40081271	40081370	7517212	0	+	0.343434	(0.32,0.35]	chr22	768084	353	INTRON	INTRON	TNRC6B	ENSG00000100354.21	ENST00000301923.13:ENST00000441751.5:ENST00000402203.5	protein_coding	protein_coding	protein_coding	protein_coding	3	45	2	1.72898	3.21139	4.6938	0.0425433	0.0137794	0.161951	0.0949306
chr3	47748985	47749085	1684747	0	-	0.35	(0.32,0.35]	chr3	172116	26	INTRON	INTRON	SMARCC1	ENSG00000173473.11	ENST00000254480.10:ENST00000425518.5:ENST00000454240.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	45	2	1.72898	3.21139	4.6938	0.0425433	0.0137794	0.161951	0.0949306
chr6	26903865	26903965	3071743	0	-	0.34	(0.32,0.35]	chr6	285551	143	INTRON	INTRON	GUSBP2	ENSG00000241549.8	ENST00000479900.5:ENST00000463434.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	3	45	2	1.72898	3.21139	4.6938	0.0425433	0.0137794	0.161951	0.0949306
chr1	227257532	227257631	651110	0	-	0.454545	(0.44,0.476]	chr1	77108	30	INTRON	INTRON	CDC42BPA	ENSG00000143776.20	ENST00000366766.8:ENST00000366769.7:ENST00000334218.9:ENST00000366767.7:ENST00000366764.8:ENST00000478573.6:ENST00000682551.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	25	2	2.29425	3.21134	4.12843	0.0518406	0.0337192	0.176696	0.134145
chr11	9429934	9430034	4729886	0	+	0.47	(0.44,0.476]	chr11	437909	1	SS5_PROX	SS5_PROX:INTRON	IPO7	ENSG00000205339.10	ENST00000379719.8	protein_coding	protein_coding	protein_coding	protein_coding	1	25	2	2.29425	3.21134	4.12843	0.0518406	0.0337192	0.176696	0.134145
chr11	61315484	61315584	4956314	0	-	0.45	(0.44,0.476]	chr11	465711	11	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	DDB1	ENSG00000167986.15	ENST00000301764.12:ENST00000680367.1:ENST00000681803.1:ENST00000680717.1:ENST00000679712.1:ENST00000680357.1:ENST00000680075.1:ENST00000679588.1:ENST00000680602.1:ENST00000680881.1:ENST00000681188.1:ENST00000535283.6:ENST00000681935.1:ENST00000680250.1:ENST00000540166.5:ENST00000679855.1:ENST00000681368.1:ENST00000543658.5:ENST00000535147.5:ENST00000537877.5:ENST00000414411.3:ENST00000535967.5:ENST00000539739.5:ENST00000540784.5:ENST00000538280.1:ENST00000545930.5:ENST00000681067.1:ENST00000680096.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	25	2	2.29425	3.21134	4.12843	0.0518406	0.0337192	0.176696	0.134145
chr16	1756853	1756952	6275980	0	+	0.464646	(0.44,0.476]	chr16	599594	40	INTRON	INTRON	MAPK8IP3	ENSG00000138834.15	ENST00000250894.8:ENST00000673691.1:ENST00000356010.9:ENST00000610761.2:ENST00000567849.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	25	2	2.29425	3.21134	4.12843	0.0518406	0.0337192	0.176696	0.134145
chr16	20778921	20779015	6317735	0	+	0.457447	(0.44,0.476]	chr16	604608	10	INTRON	INTRON	ACSM3	ENSG00000005187.12	ENST00000289416.10:ENST00000440284.6:ENST00000562251.5	protein_coding	protein_coding	protein_coding	protein_coding	1	25	2	2.29425	3.21134	4.12843	0.0518406	0.0337192	0.176696	0.134145
chr17	42326285	42326371	6772384	0	-	0.465116	(0.44,0.476]	chr17	667037	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	STAT3	ENSG00000168610.16	ENST00000264657.10:ENST00000678044.1:ENST00000678906.1:ENST00000678960.1:ENST00000679014.1:ENST00000678043.1:ENST00000677442.1:ENST00000677723.1:ENST00000679166.1:ENST00000678792.1:ENST00000678764.1:ENST00000678048.1:ENST00000678674.1:ENST00000678445.1:ENST00000678913.1:ENST00000677421.1:ENST00000679231.1:ENST00000677030.1:ENST00000678827.1:ENST00000679185.1:ENST00000677820.1:ENST00000678905.1:ENST00000677479.1:ENST00000676636.1:ENST00000678572.1:ENST00000677271.1:ENST00000677152.1:ENST00000677603.1:ENST00000677002.1:ENST00000585517.5:ENST00000678535.1:ENST00000677308.1:ENST00000389272.7:ENST00000588969.5:ENST00000677763.1:ENST00000404395.3:ENST00000677270.1:ENST00000678659.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	25	2	2.29425	3.21134	4.12843	0.0518406	0.0337192	0.176696	0.134145
chr17	81626248	81626348	6849501	0	-	0.46	(0.44,0.476]	chr17	678237	36	INTRON	INTRON	NPLOC4	ENSG00000182446.14	ENST00000331134.11:ENST00000374747.9:ENST00000574897.5:ENST00000625705.1:ENST00000570300.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	25	2	2.29425	3.21134	4.12843	0.0518406	0.0337192	0.176696	0.134145
chr18	31844923	31845023	6960384	0	-	0.45	(0.44,0.476]	chr18	688646	51	INTRON	INTRON	TRAPPC8	ENSG00000153339.15	ENST00000283351.10:ENST00000580104.5:ENST00000582539.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	25	2	2.29425	3.21134	4.12843	0.0518406	0.0337192	0.176696	0.134145
chr20	56371547	56371644	7358672	0	-	0.463918	(0.44,0.476]	chr20	750340	5	INTRON	INTRON	AURKA	ENSG00000087586.18	ENST00000395914.5:ENST00000395913.7:ENST00000312783.10:ENST00000395911.5:ENST00000395915.8:ENST00000347343.6:ENST00000371356.6:ENST00000395907.5	protein_coding	protein_coding	protein_coding	protein_coding	1	25	2	2.29425	3.21134	4.12843	0.0518406	0.0337192	0.176696	0.134145
chr5	171886787	171886886	2771533	0	-	0.474747	(0.44,0.476]	chr5	260913	83	INTRON	INTRON	FBXW11	ENSG00000072803.18	ENST00000296933.10:ENST00000517395.6:ENST00000265094.9:ENST00000393802.6:ENST00000523843.5:ENST00000522891.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	25	2	2.29425	3.21134	4.12843	0.0518406	0.0337192	0.176696	0.134145
chr5	177169944	177170044	2554062	0	+	0.46	(0.44,0.476]	chr5	243932	3	SS5_PROX	SS5_PROX:INTRON	NSD1	ENSG00000165671.22	ENST00000508896.6:ENST00000689549.1:ENST00000354179.9:ENST00000686993.1:ENST00000689326.1:ENST00000439151.7:ENST00000510954.6:ENST00000689345.1:ENST00000347982.9:ENST00000687453.1:ENST00000685206.1:ENST00000638627.3:ENST00000644863.2:ENST00000688613.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	25	2	2.29425	3.21134	4.12843	0.0518406	0.0337192	0.176696	0.134145
chrX	9545166	9545266	7619460	0	+	0.45	(0.44,0.476]	chrX	779959	15	INTRON	INTRON	TBL1X	ENSG00000101849.18	ENST00000407597.7:ENST00000380961.5:ENST00000424279.6:ENST00000645353.2:ENST00000422314.5:ENST00000645686.1:ENST00000646640.1:ENST00000647172.1:ENST00000452824.5:ENST00000415293.6:ENST00000683056.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	25	2	2.29425	3.21134	4.12843	0.0518406	0.0337192	0.176696	0.134145
chr2	241727303	241727402	1056276	0	+	0.444444	(0.44,0.476]	chr2	112621	24	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	ING5	ENSG00000168395.16	ENST00000313552.11:ENST00000474238.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	41	2	1.81595	3.21121	4.60647	0.0317953	0.0102339	0.14477	0.0850389
chrX	11254047	11254147	7759890	0	-	0.45	(0.44,0.476]	chrX	793497	1	SS5_PROX	SS5_PROX:INTRON	ARHGAP6	ENSG00000047648.23	ENST00000657361.1:ENST00000380736.5:ENST00000337414.9:ENST00000495242.5:ENST00000303025.10:ENST00000489330.6:ENST00000380718.1:ENST00000380717.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	41	2	1.81595	3.21121	4.60647	0.0317953	0.0102339	0.14477	0.0850389
chr10	73064756	73064856	4647520	0	-	0.52	(0.515,0.57]	chr10	427530	108	INTRON	INTRON	P4HA1	ENSG00000122884.13	ENST00000394890.7:ENST00000307116.6:ENST00000373008.6:ENST00000440381.5:ENST00000263556.3	protein_coding	protein_coding	protein_coding	protein_coding	15	277	2	3.037	3.21108	3.38516	2.16314e-6	7.77344e-7	0.00102492	4.95745e-4
chr11	71914680	71914779	4975865	0	-	0.313131	(0.28,0.32]	chr11	469940	103	INTRON	INTRON	XNDC1N	ENSG00000254469.10	ENST00000679695.1:ENST00000532852.5:ENST00000679412.2:ENST00000528511.6:ENST00000528560.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	44	2	1.81582	3.21096	4.6061	0.068122	0.0102724	0.184298	0.089002
chr1	2275524	2275623	2639	0	+	0.606061	(0.57,1]	chr1	557	271	INTRON	INTRON	SKI	ENSG00000157933.10	ENST00000378536.5:ENST00000508416.1:ENST00000478223.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	22	2	2.05026	3.2108100000000004	4.37136	0.0321326	0.00345135	0.145026	0.0517761
chr12	112381251	112381351	5417743	0	-	0.67	(0.57,1]	chr12	517670	612	INTRON	INTRON	HECTD4	ENSG00000173064.14	ENST00000550722.5:ENST00000377560.9:ENST00000682272.1:ENST00000550724.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	22	2	2.05026	3.2108100000000004	4.37136	0.0321326	0.00345135	0.145026	0.0517761
chr20	63888397	63888496	7300923	0	+	0.606061	(0.57,1]	chr20	743123	9	EXON_MRNA	EXON_MRNA:INTRON	TPD52L2	ENSG00000101150.18	ENST00000611972.4:ENST00000615907.4:ENST00000369927.8:ENST00000346249.9:ENST00000348257.9:ENST00000352482.8:ENST00000351424.8:ENST00000217121.9:ENST00000358548.4:ENST00000474176.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	22	2	2.05026	3.2108100000000004	4.37136	0.0321326	0.00345135	0.145026	0.0517761
chr7	148808106	148808206	3669975	0	-	0.63	(0.57,1]	chr7	340538	4	SS3_PROX	SS3_PROX:INTRON	EZH2	ENSG00000106462.12	ENST00000683292.1:ENST00000320356.7:ENST00000492143.5:ENST00000478654.5:ENST00000350995.6:ENST00000460911.5:ENST00000684400.1:ENST00000683744.1:ENST00000684510.1:ENST00000682317.1:ENST00000683293.1:ENST00000682263.1:ENST00000684300.1:ENST00000476773.5:ENST00000483967.5:ENST00000684436.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	22	2	2.05026	3.2108100000000004	4.37136	0.0321326	0.00345135	0.145026	0.0517761
chr9	134429837	134429935	4220908	0	+	0.571429	(0.57,1]	chr9	387402	2	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000481739.2:ENST00000356384.4:ENST00000672570.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	22	2	2.05026	3.2108100000000004	4.37136	0.0321326	0.00345135	0.145026	0.0517761
chrX	13318089	13318188	7622235	0	+	0.585859	(0.57,1]	chrX	780291	10	INTRON	INTRON	GS1-600G8.3	ENSG00000231216.1	ENST00000431486.1	lncRNA	lncRNA	lncRNA	lncRNA	2	22	2	2.05026	3.2108100000000004	4.37136	0.0321326	0.00345135	0.145026	0.0517761
chr11	77785558	77785658	4995625	0	-	0.33	(0.32,0.35]	chr11	472047	205	INTRON	INTRON	RSF1	ENSG00000048649.14	ENST00000308488.11:ENST00000528095.5:ENST00000440064.2:ENST00000467567.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	31	2	2.37794	3.2107900000000003	4.04364	0.0498601	0.034181	0.156383	0.146815
chr2	73944618	73944718	811627	0	+	0.34	(0.32,0.35]	chr2	90798	52	INTRON	INTRON	DGUOK	ENSG00000114956.20	ENST00000348222.3:ENST00000629438.2:ENST00000418996.5:ENST00000264093.9:ENST00000462551.1:ENST00000489796.5:ENST00000462685.1:ENST00000493055.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	31	2	2.37794	3.2107900000000003	4.04364	0.0498601	0.034181	0.156383	0.146815
chr6	68660326	68660426	2886569	0	+	0.34	(0.32,0.35]	chr6	273730	205	INTRON	INTRON	ADGRB3	ENSG00000135298.15	ENST00000370598.6:ENST00000684661.1:ENST00000546190.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	31	2	2.37794	3.2107900000000003	4.04364	0.0498601	0.034181	0.156383	0.146815
chr10	18544675	18544771	4569636	0	-	0.395833	(0.378,0.408]	chr10	421467	4	INTRON	INTRON	ENSG00000240291	ENSG00000240291.1	ENST00000425669.1	lncRNA	lncRNA	lncRNA	lncRNA	5	125	2	2.97947	3.2107200000000002	3.44197	2.2808e-4	1.52249e-4	0.0133228	0.0112857
chr1	52087450	52087549	101574	0	+	0.434343	(0.408,0.44]	chr1	13457	8	UTR3	UTR3:EXON_MRNA	BTF3L4	ENSG00000134717.18	ENST00000313334.13:ENST00000472944.6	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	2.58624	3.21059	3.83494	0.0411442	0.0273686	0.161534	0.123904
chr16	67933141	67933238	6505951	0	-	0.412371	(0.408,0.44]	chr16	629749	23	EXON_MRNA	EXON_MRNA:INTRON	ENSG00000261884	ENSG00000261884.2	ENST00000575231.1:ENST00000573493.1	protein_coding	retained_intron	protein_coding	retained_intron:nonsense_mediated_decay	1	29	2	2.58624	3.21059	3.83494	0.0411442	0.0273686	0.161534	0.123904
chr7	102113538	102113635	3369335	0	+	0.43299	(0.408,0.44]	chr7	315263	14	INTRON	INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000560541.5:ENST00000558836.5:ENST00000465461.7:ENST00000485792.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	29	2	2.58624	3.21059	3.83494	0.0411442	0.0273686	0.161534	0.123904
chr18	9165715	9165814	6869220	0	+	0.323232	(0.32,0.35]	chr18	680561	275	INTRON	INTRON	ANKRD12	ENSG00000101745.17	ENST00000585234.5:ENST00000262126.9:ENST00000577992.1:ENST00000540578.6:ENST00000581635.5:ENST00000400020.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	64	2	1.40199	3.21058	5.01917	0.0432025	0.0055659	0.162255	0.0648867
chr8	66924555	66924650	3961454	0	-	0.515789	(0.515,0.57]	chr8	363415	15	INTRON	INTRON	SNHG6	ENSG00000245910.9	ENST00000686474.1:ENST00000520944.6:ENST00000521399.6:ENST00000693345.1:ENST00000520348.6:ENST00000689720.1:ENST00000520619.1:ENST00000521127.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	16	353	2	2.3876	3.2105	4.0334	1.34186e-4	2.54966e-9	0.00998237	1.03466e-5
chr1	213134385	213134485	311538	0	+	0.28	[0,0.28]	chr1	35945	41	INTRON	INTRON	RPS6KC1	ENSG00000136643.12	ENST00000615329.4:ENST00000543354.5:ENST00000614059.4:ENST00000543470.5:ENST00000366960.8:ENST00000366959.4:ENST00000490299.5:ENST00000468069.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	43	2	1.95356	3.2104099999999995	4.46726	0.0463152	0.0427997	0.166231	0.148082
chr3	5152936	5153036	1353882	0	+	0.26	[0,0.28]	chr3	142361	240	INTRON	INTRON	ARL8B	ENSG00000134108.14	ENST00000429403.5:ENST00000256496.8:ENST00000455168.5:ENST00000444332.1:ENST00000419534.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	43	2	1.95356	3.2104099999999995	4.46726	0.0463152	0.0427997	0.166231	0.148082
chr10	124757638	124757736	4712199	0	-	0.255102	[0,0.28]	chr10	434793	15	UTR3	UTR3:EXON_MRNA:INTRON	EEF1AKMT2	ENSG00000203791.15	ENST00000495711.2:ENST00000652548.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	53	2	1.79953	3.210185	4.62084	0.0377477	0.0313633	0.156608	0.13151
chr3	139388085	139388183	1832155	0	-	0.408163	(0.378,0.408]	chr3	184181	23	INTRON	INTRON	COPB2	ENSG00000184432.11	ENST00000503326.6:ENST00000677882.1:ENST00000677601.1:ENST00000677309.1:ENST00000677073.1:ENST00000512242.6:ENST00000507777.6:ENST00000514508.2:ENST00000333188.10:ENST00000510181.6:ENST00000512309.2:ENST00000515006.5:ENST00000512153.5:ENST00000513274.5:ENST00000510491.5:ENST00000504295.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	109	2	2.87622	3.21014	3.54406	0.00110718	1.39843e-4	0.0306086	0.0101841
chr5	54087657	54087756	2618683	0	-	0.343434	(0.32,0.35]	chr5	248841	117	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	87	2	2.66302	3.20998	3.75694	0.00542632	3.37248e-4	0.0645052	0.0163178
chr6	157838093	157838192	3015911	0	+	0.494949	(0.476,0.515]	chr6	281353	80	INTRON	INTRON	SNX9	ENSG00000130340.17	ENST00000614703.4:ENST00000614800.4:ENST00000680863.1:ENST00000679814.1:ENST00000680464.1:ENST00000681186.1:ENST00000679732.1:ENST00000681183.1:ENST00000681534.1:ENST00000681651.1:ENST00000680089.1:ENST00000680078.1:ENST00000680974.1:ENST00000680095.1:ENST00000680015.1:ENST00000681138.1:ENST00000392185.8:ENST00000679790.1:ENST00000680495.1:ENST00000679691.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	91	2	3.00231	3.2097949999999997	3.41728	0.00165726	1.96194e-4	0.0369207	0.0122528
chr2	241682433	241682521	1349394	0	-	0.386364	(0.378,0.408]	chr2	141806	1	SS3_PROX	SS3_PROX:SS5_PROX:INTRON	DTYMK	ENSG00000168393.13	ENST00000400770.6:ENST00000305784.7:ENST00000445261.5:ENST00000432348.5:ENST00000420144.1:ENST00000493095.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	77	2	2.98295	3.2096999999999998	3.43645	0.00171162	9.47389e-4	0.037419	0.0282007
chr20	46087722	46087821	7346445	0	-	0.353535	(0.35,0.378]	chr20	749028	79	INTRON	INTRON	NCOA5	ENSG00000124160.12	ENST00000290231.11:ENST00000372291.3	protein_coding	protein_coding	protein_coding	protein_coding	2	61	2	3.16371	3.2096	3.25549	0.00383956	0.00363602	0.0562562	0.0535085
chr20	3909500	3909596	7227102	0	+	0.427083	(0.408,0.44]	chr20	734495	2	INTRON	INTRON	PANK2	ENSG00000125779.24	ENST00000497424.5:ENST00000316562.9:ENST00000495692.5:ENST00000610179.7:ENST00000643504.2:ENST00000336066.8:ENST00000646394.1:ENST00000621507.1:ENST00000471830.1:ENST00000464452.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	56	2	3.00595	3.20959	3.41323	0.00781452	0.00129989	0.0759016	0.0333764
chr6	34878025	34878119	3086228	0	-	0.468085	(0.44,0.476]	chr6	288702	7	UTR3	UTR3:EXON_MRNA	TAF11	ENSG00000064995.19	ENST00000361288.9:ENST00000650109.1:ENST00000693593.1:ENST00000420584.3:ENST00000689560.1:ENST00000685682.1:ENST00000691871.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	14	316	2	2.98144	3.2095700000000003	3.4377	7.81107e-6	1.2501e-6	0.00210987	6.49605e-4
chr7	6473683	6473782	3478261	0	-	0.414141	(0.408,0.44]	chr7	325464	1	SS5_PROX	SS5_PROX:INTRON	DAGLB:KDELR2	ENSG00000164535.15:ENSG00000136240.10	ENST00000436575.5:ENST00000463747.1:ENST00000258739.9:ENST00000490996.1:ENST00000382267.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	57	2	2.78122	3.209535	3.63785	0.015812	4.70012e-4	0.101453	0.0196294
chr7	101924682	101924782	3367439	0	+	0.45	(0.44,0.476]	chr7	315225	81	INTRON	INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000497815.5:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000558469.5:ENST00000560541.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	103	2	2.20714	3.20952	4.2119	0.00493236	2.22282e-5	0.061186	0.00367645
chr1	153859334	153859434	557129	0	-	0.55	(0.515,0.57]	chr1	65983	306	INTRON	INTRON	GATAD2B	ENSG00000143614.10	ENST00000368655.5:ENST00000634544.1:ENST00000634408.1:ENST00000634401.1:ENST00000634791.1:ENST00000636014.1:ENST00000637331.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	24	2	2.12971	3.20946	4.28921	0.0757903	0.00990051	0.194427	0.0877296
chr16	89440312	89440412	6543099	0	-	0.57	(0.515,0.57]	chr16	634281	86	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	24	2	2.12971	3.20946	4.28921	0.0757903	0.00990051	0.194427	0.0877296
chr17	82117347	82117446	6851465	0	-	0.555556	(0.515,0.57]	chr17	678956	32	INTRON	INTRON	CCDC57	ENSG00000176155.21	ENST00000694881.1:ENST00000389641.9:ENST00000694882.1:ENST00000665763.1:ENST00000578910.2:ENST00000392345.6:ENST00000583593.2:ENST00000419322.6:ENST00000392346.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	24	2	2.12971	3.20946	4.28921	0.0757903	0.00990051	0.194427	0.0877296
chr2	55590152	55590252	1124845	0	-	0.52	(0.515,0.57]	chr2	120665	8	INTRON	INTRON	PPP4R3B	ENSG00000275052.5	ENST00000616407.2:ENST00000611717.4:ENST00000616288.4	protein_coding	protein_coding	protein_coding	protein_coding	1	24	2	2.12971	3.20946	4.28921	0.0757903	0.00990051	0.194427	0.0877296
chr20	50514588	50514687	7285956	0	+	0.535354	(0.515,0.57]	chr20	741241	36	INTRON	INTRON	PTPN1	ENSG00000196396.10	ENST00000541713.5:ENST00000371621.5	protein_coding	protein_coding	protein_coding	protein_coding	1	24	2	2.12971	3.20946	4.28921	0.0757903	0.00990051	0.194427	0.0877296
chr3	155805396	155805496	1843996	0	-	0.52	(0.515,0.57]	chr3	185521	4	SS5_PROX	SS5_PROX:INTRON	C3orf33	ENSG00000174928.16	ENST00000340171.7:ENST00000482061.6:ENST00000534941.2:ENST00000465810.1:ENST00000486435.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	24	2	2.12971	3.20946	4.28921	0.0757903	0.00990051	0.194427	0.0877296
chr1	54353322	54353422	463229	0	-	0.49	(0.476,0.515]	chr1	55780	176	INTRON	INTRON	SSBP3	ENSG00000157216.16	ENST00000610401.5:ENST00000357475.9:ENST00000371319.8:ENST00000417664.7:ENST00000533946.6:ENST00000326956.12:ENST00000371320.8:ENST00000525990.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	25	2	2.28264	3.20925	4.13586	0.0534132	0.031846	0.179876	0.13151
chr1	54370400	54370500	463401	0	-	0.5	(0.476,0.515]	chr1	55784	137	INTRON	INTRON	SSBP3	ENSG00000157216.16	ENST00000610401.5:ENST00000357475.9:ENST00000371319.8:ENST00000417664.7:ENST00000533946.6:ENST00000371320.8:ENST00000525990.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	25	2	2.28264	3.20925	4.13586	0.0534132	0.031846	0.179876	0.13151
chr1	246765257	246765357	351440	0	+	0.48	(0.476,0.515]	chr1	40607	5	INTRON	INTRON	SCCPDH	ENSG00000143653.10	ENST00000366510.4	protein_coding	protein_coding	protein_coding	protein_coding	1	25	2	2.28264	3.20925	4.13586	0.0534132	0.031846	0.179876	0.13151
chr10	29459116	29459212	4415284	0	+	0.479167	(0.476,0.515]	chr10	407254	2	INTRON	INTRON	SVIL-AS1	ENSG00000224597.11	ENST00000684815.1:ENST00000413405.6:ENST00000646086.2:ENST00000423223.6:ENST00000414457.6:ENST00000686070.1:ENST00000687838.1:ENST00000445521.6:ENST00000686207.1:ENST00000446807.5:ENST00000455774.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	1	25	2	2.28264	3.20925	4.13586	0.0534132	0.031846	0.179876	0.13151
chr14	81188719	81188819	5935569	0	-	0.48	(0.476,0.515]	chr14	564120	27	INTRON	INTRON	GTF2A1	ENSG00000165417.12	ENST00000553612.6:ENST00000298173.7:ENST00000434192.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	25	2	2.28264	3.20925	4.13586	0.0534132	0.031846	0.179876	0.13151
chr15	64616827	64616927	6045652	0	+	0.5	(0.476,0.515]	chr15	575696	1139	INTRON	INTRON	ZNF609	ENSG00000180357.10	ENST00000326648.5:ENST00000558680.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	25	2	2.28264	3.20925	4.13586	0.0534132	0.031846	0.179876	0.13151
chr16	74960578	74960676	6527046	0	-	0.489796	(0.476,0.515]	chr16	632149	6	INTRON	INTRON	WDR59	ENSG00000103091.15	ENST00000262144.11:ENST00000616369.4:ENST00000536050.5:ENST00000568462.5:ENST00000568323.5:ENST00000563111.2:ENST00000562331.5:ENST00000564859.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	25	2	2.28264	3.20925	4.13586	0.0534132	0.031846	0.179876	0.13151
chr22	29532463	29532561	7574623	0	-	0.5	(0.476,0.515]	chr22	774713	1	INTRON	INTRON	THOC5	ENSG00000100296.14	ENST00000490103.6:ENST00000397871.5:ENST00000397872.5:ENST00000442555.5:ENST00000358079.8:ENST00000397873.6:ENST00000484924.5:ENST00000443089.5:ENST00000492707.5:ENST00000488052.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	25	2	2.28264	3.20925	4.13586	0.0534132	0.031846	0.179876	0.13151
chr3	4505290	4505390	1349985	0	+	0.51	(0.476,0.515]	chr3	141947	104	INTRON	INTRON	ITPR1	ENSG00000150995.21	ENST00000357086.10:ENST00000649669.1:ENST00000649015.2:ENST00000354582.12:ENST00000467056.6:ENST00000456211.8:ENST00000443694.5:ENST00000648266.1:ENST00000477577.2:ENST00000544951.6:ENST00000650294.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	25	2	2.28264	3.20925	4.13586	0.0534132	0.031846	0.179876	0.13151
chr4	497255	497355	2093154	0	-	0.49	(0.476,0.515]	chr4	206795	232	INTRON	INTRON	ZNF721	ENSG00000182903.16	ENST00000511833.3:ENST00000338977.5	protein_coding	protein_coding	protein_coding	protein_coding	1	25	2	2.28264	3.20925	4.13586	0.0534132	0.031846	0.179876	0.13151
chr4	82915258	82915357	1987144	0	+	0.50505	(0.476,0.515]	chr4	198741	41	INTRON	INTRON	THAP9	ENSG00000168152.13	ENST00000302236.10:ENST00000505901.1:ENST00000506208.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	25	2	2.28264	3.20925	4.13586	0.0534132	0.031846	0.179876	0.13151
chr8	31052871	31052971	3728122	0	+	0.49	(0.476,0.515]	chr8	346522	185	INTRON	INTRON	WRN	ENSG00000165392.11	ENST00000650667.1:ENST00000298139.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	25	2	2.28264	3.20925	4.13586	0.0534132	0.031846	0.179876	0.13151
chr8	58569308	58569406	3757652	0	+	0.510204	(0.476,0.515]	chr8	349449	39	INTRON	INTRON	SDCBP	ENSG00000137575.12	ENST00000522243.5:ENST00000447182.6:ENST00000413219.6:ENST00000424270.6:ENST00000523483.5:ENST00000520168.5:ENST00000260130.9:ENST00000519115.5:ENST00000522843.5:ENST00000630925.1:ENST00000447267.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	25	2	2.28264	3.20925	4.13586	0.0534132	0.031846	0.179876	0.13151
chr9	107297451	107297550	4183519	0	+	0.50505	(0.476,0.515]	chr9	381543	122	INTRON	INTRON	RAD23B	ENSG00000119318.13	ENST00000419616.5:ENST00000358015.8:ENST00000416373.6:ENST00000442587.1	protein_coding	protein_coding	protein_coding	protein_coding	1	25	2	2.28264	3.20925	4.13586	0.0534132	0.031846	0.179876	0.13151
chr1	42329525	42329625	432382	0	-	0.41	(0.408,0.44]	chr1	52343	53	INTRON	INTRON	FOXJ3	ENSG00000198815.9	ENST00000372573.5:ENST00000372572.5:ENST00000361776.5:ENST00000361346.6:ENST00000445886.5	protein_coding	protein_coding	protein_coding	protein_coding	1	25	2	2.2957	3.208785	4.12187	0.0516458	0.0354689	0.176696	0.137535
chr1	77678008	77678108	493418	0	-	0.42	(0.408,0.44]	chr1	58319	3	INTRON	INTRON	ZZZ3	ENSG00000036549.13	ENST00000370801.8:ENST00000370798.5:ENST00000433749.5:ENST00000414381.5:ENST00000463166.5:ENST00000469944.1:ENST00000458763.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	25	2	2.2957	3.208785	4.12187	0.0516458	0.0354689	0.176696	0.137535
chr11	9177752	9177847	4908184	0	-	0.431579	(0.408,0.44]	chr11	460062	10	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	DENND5A	ENSG00000184014.9	ENST00000328194.8:ENST00000681203.1:ENST00000530780.2:ENST00000680358.1:ENST00000679999.1:ENST00000680470.1:ENST00000680599.1:ENST00000680554.1:ENST00000679745.1:ENST00000680252.1:ENST00000681425.1:ENST00000681158.1:ENST00000679460.1:ENST00000679568.1:ENST00000679446.1:ENST00000680294.1:ENST00000680742.1:ENST00000680885.1:ENST00000680576.1:ENST00000530044.5:ENST00000526707.5:ENST00000681173.1:ENST00000527896.1:ENST00000530867.2:ENST00000681915.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	25	2	2.2957	3.208785	4.12187	0.0516458	0.0354689	0.176696	0.137535
chr11	62125260	62125359	4797886	0	+	0.414141	(0.408,0.44]	chr11	444466	7	INTRON	INTRON	INCENP	ENSG00000149503.13	ENST00000278849.4:ENST00000533896.5:ENST00000394818.8:ENST00000528037.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	25	2	2.2957	3.208785	4.12187	0.0516458	0.0354689	0.176696	0.137535
chr12	123305019	123305119	5444580	0	-	0.44	(0.408,0.44]	chr12	520974	3	SS3_PROX	SS3_PROX:INTRON	SBNO1	ENSG00000139697.14	ENST00000602398.3:ENST00000267176.8:ENST00000420886.6	protein_coding	protein_coding	protein_coding	protein_coding	1	25	2	2.2957	3.208785	4.12187	0.0516458	0.0354689	0.176696	0.137535
chr14	50314626	50314726	5716042	0	+	0.44	(0.408,0.44]	chr14	542813	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	DMAC2L	ENSG00000125375.18	ENST00000311459.12:ENST00000554438.6:ENST00000672419.1:ENST00000672910.1:ENST00000557421.7:ENST00000555939.6:ENST00000426751.7:ENST00000245448.11:ENST00000554204.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	25	2	2.2957	3.208785	4.12187	0.0516458	0.0354689	0.176696	0.137535
chr14	73112450	73112550	5784642	0	+	0.43	(0.408,0.44]	chr14	547910	2	SS5_PROX	SS5_PROX:INTRON	RBM25	ENSG00000119707.14	ENST00000527432.5:ENST00000261973.12:ENST00000532683.5:ENST00000528081.5:ENST00000532483.5:ENST00000527449.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	25	2	2.2957	3.208785	4.12187	0.0516458	0.0354689	0.176696	0.137535
chr15	30717727	30717826	5993202	0	+	0.434343	(0.408,0.44]	chr15	569779	10	INTRON	INTRON	ENSG00000284906:ENSG00000285035:ENSG00000187951	ENSG00000284906.3:ENSG00000285035.2:ENSG00000187951.11	ENST00000685924.1:ENST00000566548.5:ENST00000602616.6:ENST00000562954.1	protein_coding	protein_coding	protein_coding:lncRNA:transcribed_unprocessed_pseudogene	protein_coding:lncRNA:processed_transcript	1	25	2	2.2957	3.208785	4.12187	0.0516458	0.0354689	0.176696	0.137535
chr2	31973095	31973195	1090742	0	-	0.41	(0.408,0.44]	chr2	116913	99	INTRON	INTRON	MEMO1:DPY30	ENSG00000162959.14:ENSG00000162961.14	ENST00000295065.9:ENST00000446765.5:ENST00000404530.6:ENST00000490459.5:ENST00000426310.6:ENST00000413686.1:ENST00000407893.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	25	2	2.2957	3.208785	4.12187	0.0516458	0.0354689	0.176696	0.137535
chr2	128118689	128118786	862754	0	+	0.412371	(0.408,0.44]	chr2	96705	20	INTRON	INTRON	UGGT1	ENSG00000136731.13	ENST00000259253.11:ENST00000438277.5:ENST00000376723.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	25	2	2.2957	3.208785	4.12187	0.0516458	0.0354689	0.176696	0.137535
chr20	48936800	48936900	7282726	0	+	0.42	(0.408,0.44]	chr20	740596	144	INTRON	INTRON	ARFGEF2	ENSG00000124198.10	ENST00000371917.5:ENST00000681399.1:ENST00000679436.1:ENST00000681885.1:ENST00000681021.1:ENST00000680871.1:ENST00000681656.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	25	2	2.2957	3.208785	4.12187	0.0516458	0.0354689	0.176696	0.137535
chr3	20112087	20112187	1377150	0	+	0.41	(0.408,0.44]	chr3	145120	3	SS5_PROX	SS5_PROX:INTRON	KAT2B	ENSG00000114166.8	ENST00000263754.5:ENST00000469085.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	25	2	2.2957	3.208785	4.12187	0.0516458	0.0354689	0.176696	0.137535
chr7	73548597	73548696	3555233	0	-	0.434343	(0.408,0.44]	chr7	330846	46	INTRON	INTRON	BCL7B	ENSG00000106635.8	ENST00000223368.7:ENST00000411832.5:ENST00000482231.5:ENST00000454871.5:ENST00000463858.5:ENST00000448175.5:ENST00000455335.2:ENST00000464288.5:ENST00000416906.2:ENST00000493592.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	25	2	2.2957	3.208785	4.12187	0.0516458	0.0354689	0.176696	0.137535
chr8	28182593	28182693	3723135	0	+	0.44	(0.408,0.44]	chr8	346112	202	INTRON	INTRON	ELP3	ENSG00000134014.17	ENST00000521015.5:ENST00000380353.8:ENST00000537665.2:ENST00000523687.5:ENST00000524103.5:ENST00000256398.13:ENST00000518112.5:ENST00000519261.5:ENST00000523357.5:ENST00000517975.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	25	2	2.2957	3.208785	4.12187	0.0516458	0.0354689	0.176696	0.137535
chr8	73793901	73794001	3971404	0	-	0.44	(0.408,0.44]	chr8	364207	78	UTR3	UTR3:EXON_MRNA:INTRON	ENSG00000258677:UBE2W	ENSG00000258677.2:ENSG00000104343.21	ENST00000358757.5:ENST00000523278.5:ENST00000602593.6:ENST00000517608.5:ENST00000650817.1:ENST00000422906.6:ENST00000419880.7:ENST00000651945.1:ENST00000519277.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	25	2	2.2957	3.208785	4.12187	0.0516458	0.0354689	0.176696	0.137535
chr14	102621515	102621615	5822822	0	+	0.39	(0.378,0.408]	chr14	552490	278	INTRON	INTRON	RCOR1	ENSG00000089902.10	ENST00000262241.7	protein_coding	protein_coding	protein_coding	protein_coding	4	93	2	2.53602	3.208775	3.88153	0.0020933	2.49905e-4	0.0424943	0.0146029
chr4	165340875	165340968	2079770	0	+	0.27957	[0,0.28]	chr4	205588	1	INTRON	INTRON	MSMO1	ENSG00000052802.13	ENST00000261507.11:ENST00000393766.6	protein_coding	protein_coding	protein_coding	protein_coding	5	68	2	1.47169	3.20865	4.94561	0.0479607	0.0150263	0.171039	0.0994339
chr6	147218559	147218659	2988849	0	+	0.51	(0.476,0.515]	chr6	280001	121	INTRON	INTRON	STXBP5	ENSG00000164506.15	ENST00000321680.11:ENST00000367481.7:ENST00000546097.5:ENST00000367480.7	protein_coding	protein_coding	protein_coding	protein_coding	5	108	2	1.95469	3.20861	4.46253	0.0115753	9.54933e-6	0.0962115	0.00237264
chr15	41295504	41295604	6004503	0	+	0.36	(0.35,0.378]	chr15	571266	47	INTRON	INTRON	OIP5-AS1	ENSG00000247556.6	ENST00000558945.5:ENST00000500949.6:ENST00000561275.5:ENST00000560706.5:ENST00000501665.2	lncRNA	lncRNA	lncRNA	lncRNA	6	158	2	2.86205	3.208565	3.55508	7.01936e-4	8.10639e-6	0.024224	0.00204371
chr19	5976679	5976779	7125598	0	-	0.49	(0.476,0.515]	chr19	717398	1	SS3_PROX	SS3_PROX:INTRON	RANBP3	ENSG00000031823.14	ENST00000340578.10:ENST00000439268.6:ENST00000592771.5:ENST00000591092.5:ENST00000034275.12:ENST00000587479.2:ENST00000592621.5:ENST00000590623.5:ENST00000591736.5:ENST00000590953.5:ENST00000588879.5:ENST00000587159.5:ENST00000586117.5:ENST00000589353.5:ENST00000587463.5:ENST00000588010.5:ENST00000591124.5:ENST00000585339.5:ENST00000592133.5:ENST00000591881.5:ENST00000589886.5:ENST00000587263.5:ENST00000587956.5:ENST00000591333.5:ENST00000592266.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	151	2	2.84911	3.208475	3.56784	6.96651e-5	6.51869e-5	0.00715707	0.00691946
chr15	65766538	65766617	6209536	0	-	0.455696	(0.44,0.476]	chr15	592612	2	EXON_LNCRNA	EXON_LNCRNA:INTRON	DENND4A:ENSG00000261544	ENSG00000174485.16:ENSG00000261544.1	ENST00000443035.8:ENST00000431932.6:ENST00000564674.5:ENST00000568515.1:ENST00000567396.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	3	77	2	2.29126	3.2084399999999995	4.12562	0.0165638	3.66727e-5	0.102621	0.00484751
chr7	151370072	151370170	3449370	0	+	0.44898	(0.44,0.476]	chr7	322390	8	INTRON	INTRON	NUB1	ENSG00000013374.17	ENST00000413040.7:ENST00000568733.6:ENST00000470229.6:ENST00000460712.1:ENST00000480714.1	protein_coding	protein_coding	protein_coding	protein_coding	3	77	2	2.29126	3.2084399999999995	4.12562	0.0165638	3.66727e-5	0.102621	0.00484751
chr17	20891829	20891929	6576298	0	+	0.43	(0.408,0.44]	chr17	639379	2	SS3_PROX	SS3_PROX:INTRON	CCDC144NL-AS1	ENSG00000233098.10	ENST00000577537.5:ENST00000692759.1:ENST00000443508.8:ENST00000692309.1:ENST00000439794.6:ENST00000417232.6:ENST00000583962.2:ENST00000582324.5:ENST00000577860.5	lncRNA	lncRNA	lncRNA	lncRNA	4	92	2	2.62147	3.208405	3.79534	0.00180223	2.17043e-4	0.0382461	0.0129235
chr11	34083637	34083733	4767978	0	+	0.4375	(0.408,0.44]	chr11	440992	2	INTRON	INTRON	CAPRIN1	ENSG00000135387.21	ENST00000341394.9:ENST00000528856.5:ENST00000389645.7:ENST00000532820.5:ENST00000530820.5:ENST00000529307.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	28	2	2.43988	3.208335	3.97679	0.0398236	0.0299485	0.143072	0.142135
chr11	46404124	46404224	4945338	0	-	0.43	(0.408,0.44]	chr11	463413	58	INTRON	INTRON	AMBRA1	ENSG00000110497.15	ENST00000683756.1:ENST00000534300.5:ENST00000533727.5:ENST00000314845.7:ENST00000458649.6:ENST00000526545.5:ENST00000528950.1	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	2.43988	3.208335	3.97679	0.0398236	0.0299485	0.143072	0.142135
chr12	1569367	1569467	5063349	0	+	0.42	(0.408,0.44]	chr12	477805	381	INTRON	INTRON	WNT5B	ENSG00000111186.13	ENST00000539198.5:ENST00000545811.5	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	2.43988	3.208335	3.97679	0.0398236	0.0299485	0.143072	0.142135
chr7	26168052	26168152	3292159	0	+	0.42	(0.408,0.44]	chr7	305815	146	INTRON	INTRON	NFE2L3	ENSG00000050344.9	ENST00000056233.4	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	2.43988	3.208335	3.97679	0.0398236	0.0299485	0.143072	0.142135
chr4	183156307	183156407	2084351	0	+	0.47	(0.44,0.476]	chr4	205959	563	INTRON	INTRON	WWC2	ENSG00000151718.16	ENST00000403733.8:ENST00000508614.5:ENST00000448232.6:ENST00000513834.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	34	2	2.0776	3.2082949999999997	4.33899	0.0292951	0.0206616	0.141862	0.110999
chr3	47127562	47127662	1681240	0	-	0.56	(0.515,0.57]	chr3	171624	5	INTRON	INTRON	SETD2	ENSG00000181555.22	ENST00000691544.1:ENST00000638947.2:ENST00000409792.4:ENST00000412450.1	protein_coding	protein_coding	protein_coding	protein_coding	3	37	2	1.81744	3.20829	4.59914	0.031028	0.00616166	0.143457	0.0676501
chr1	236898634	236898733	343564	0	+	0.545455	(0.515,0.57]	chr1	39994	11	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	MTR	ENSG00000116984.15	ENST00000680454.1:ENST00000366577.10:ENST00000674797.2:ENST00000679569.1:ENST00000650888.1:ENST00000681937.1:ENST00000366576.3:ENST00000470570.2:ENST00000681813.1:ENST00000652483.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	33	2	2.01737	3.2081850000000003	4.399	0.0352218	0.00708863	0.137535	0.0754923
chr19	5594178	5594278	7124058	0	-	0.56	(0.515,0.57]	chr19	716978	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	SAFB2	ENSG00000130254.12	ENST00000252542.9	protein_coding	protein_coding	protein_coding	protein_coding	5	105	2	2.50953	3.2081549999999996	3.90678	0.0023952	3.38642e-6	0.0440612	0.00120054
chr1	120537638	120537730	535097	0	-	0.586957	(0.57,1]	chr1	62958	9	INTRON	INTRON	PDE4DIPP2	ENSG00000275131.3	ENST00000612480.2:ENST00000637601.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	3	27	2	1.74185	3.20814	4.67443	0.0401765	8.07515e-4	0.143911	0.0258804
chr22	18559642	18559741	7550948	0	-	0.565657	(0.515,0.57]	chr22	771829	67	INTRON	INTRON	PI4KAP1	ENSG00000274602.5	ENST00000612500.4:ENST00000611748.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	3	64	2	2.92115	3.208055	3.49496	0.00110258	9.61701e-4	0.03038	0.0282401
chr10	125097793	125097893	4713708	0	-	0.6	(0.57,1]	chr10	434903	91	INTRON	INTRON	CTBP2	ENSG00000175029.17	ENST00000337195.9:ENST00000411419.6:ENST00000494626.6:ENST00000531469.5:ENST00000460976.5:ENST00000476817.1:ENST00000530884.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	120	2	2.72436	3.2079899999999997	3.69162	1.1309e-5	7.65183e-7	0.00266636	4.90537e-4
chr10	73716580	73716680	4651924	0	-	0.32	(0.28,0.32]	chr10	428192	4	SS3_PROX	SS3_PROX:INTRON	BMS1P4	ENSG00000271816.1:ENSG00000242338.6	ENST00000580790.1:ENST00000584747.5	lncRNA	lncRNA	lncRNA:transcribed_unprocessed_pseudogene	lncRNA:processed_transcript	3	97	2	2.94535	3.207985	3.47062	0.00213731	0.00137212	0.0417866	0.0340241
chr1	204404445	204404541	621966	0	-	0.40625	(0.378,0.408]	chr1	73936	12	UTR3	UTR3:EXON_MRNA:INTRON	PPP1R15B	ENSG00000158615.10	ENST00000693720.1:ENST00000367188.5:ENST00000689921.1:ENST00000690849.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	31	713	2	3.17546	3.20789	3.24032	6.32786e-7	7.31521e-8	4.68389e-4	1.17561e-4
chr7	151498480	151498580	3674711	0	-	0.64	(0.57,1]	chr7	341206	3	SS3_PROX	SS3_PROX:INTRON	RHEB	ENSG00000106615.10	ENST00000262187.10:ENST00000472642.5:ENST00000478470.5:ENST00000496004.5:ENST00000470370.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	41	2	2.58733	3.2076700000000002	3.82801	0.00454222	9.41714e-5	0.0595107	0.00813008
chr9	91900486	91900586	4284770	0	-	0.58	(0.57,1]	chr9	393921	134	INTRON	INTRON	ROR2	ENSG00000169071.15	ENST00000375715.5:ENST00000375708.4:ENST00000495386.5:ENST00000546883.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	32	2	2.78409	3.207665	3.63124	0.0116033	2.87208e-4	0.0889104	0.0150568
chr12	132811991	132812082	5450047	0	-	0.362637	(0.35,0.378]	chr12	522089	2	INTRON	INTRON	GOLGA3	ENSG00000090615.16	ENST00000204726.9:ENST00000450791.8:ENST00000688114.1:ENST00000685283.1:ENST00000691696.1:ENST00000691636.1:ENST00000690897.1:ENST00000456883.7:ENST00000545875.4:ENST00000688251.1:ENST00000692951.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	97	2	2.80389	3.20761	3.61133	9.14099e-4	6.14024e-4	0.0278396	0.0223951
chr10	21547135	21547234	4404538	0	+	0.40404	(0.378,0.408]	chr10	406427	54	INTRON	INTRON	MLLT10	ENSG00000078403.17	ENST00000651097.1:ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000377100.8:ENST00000377091.7:ENST00000650772.1:ENST00000651298.1:ENST00000652497.1:ENST00000495130.5:ENST00000377059.7:ENST00000621220.4:ENST00000476557.5:ENST00000462999.5:ENST00000430455.2:ENST00000479634.1:ENST00000480415.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	59	2	2.72993	3.20755	3.68517	0.0188736	3.90172e-4	0.108861	0.0177751
chr10	74342640	74342740	4457687	0	+	0.46	(0.44,0.476]	chr10	411566	30	INTRON	INTRON	ADK	ENSG00000156110.15	ENST00000672429.1:ENST00000539909.6:ENST00000286621.7:ENST00000673352.1:ENST00000673310.1:ENST00000672920.1:ENST00000672394.1:ENST00000372734.5:ENST00000673027.1:ENST00000541550.6:ENST00000672604.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	44	2	1.55662	3.207395	4.85817	0.0688347	0.00223254	0.184298	0.0435144
chr1	19344998	19345092	387491	0	-	0.56383	(0.515,0.57]	chr1	46344	7	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	CAPZB	ENSG00000077549.19	ENST00000264202.8:ENST00000264203.7:ENST00000375142.5:ENST00000482808.2:ENST00000674449.1:ENST00000674299.1:ENST00000674390.1:ENST00000375144.6:ENST00000674432.1:ENST00000433834.5:ENST00000674228.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	55	2	1.73168	3.2073899999999997	4.6831	0.0119342	0.00471288	0.0962115	0.0600108
chr1	227125419	227125518	649778	0	-	0.474747	(0.44,0.476]	chr1	77042	51	INTRON	INTRON	CDC42BPA	ENSG00000143776.20	ENST00000366766.8:ENST00000366769.7:ENST00000334218.9:ENST00000366767.7:ENST00000366764.8	protein_coding	protein_coding	protein_coding	protein_coding	2	39	2	2.19078	3.207355	4.22393	0.0226089	0.0162322	0.117489	0.109464
chr17	61913064	61913163	6809454	0	-	0.464646	(0.44,0.476]	chr17	672755	6	INTRON	INTRON	INTS2	ENSG00000108506.13	ENST00000251334.7:ENST00000617492.4:ENST00000444766.7:ENST00000646745.1:ENST00000647009.1:ENST00000646954.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	39	2	2.19078	3.207355	4.22393	0.0226089	0.0162322	0.117489	0.109464
chr6	158562929	158563029	3021627	0	+	0.53	(0.515,0.57]	chr6	281792	23	INTRON	INTRON	TMEM181	ENSG00000146433.10	ENST00000367090.4:ENST00000684151.1	protein_coding	protein_coding	protein_coding	protein_coding	3	64	2	2.87626	3.20735	3.53844	0.00136224	7.92613e-4	0.0339121	0.0259663
chr1	16951812	16951912	38442	0	+	0.46	(0.44,0.476]	chr1	4545	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	CROCC	ENSG00000058453.17	ENST00000375541.10:ENST00000445545.6:ENST00000467938.5:ENST00000494191.6:ENST00000486318.1:ENST00000498688.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	92	2	2.69735	3.20731	3.71727	0.00125459	3.2089e-4	0.0323608	0.0159645
chr1	205625231	205625331	623438	0	-	0.3	(0.28,0.32]	chr1	74153	2	SS5_PROX	SS5_PROX:INTRON	ELK4	ENSG00000158711.14	ENST00000616704.4:ENST00000357992.9:ENST00000289703.8:ENST00000468523.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	29	2	2.38101	3.20723	4.03345	0.0704058	0.0456017	0.184298	0.164236
chr10	28618754	28618848	4414679	0	+	0.319149	(0.28,0.32]	chr10	407208	6	INTRON	INTRON	WAC	ENSG00000095787.24	ENST00000680735.1:ENST00000375664.8:ENST00000628285.3:ENST00000681112.1:ENST00000679570.1:ENST00000375646.5:ENST00000354911.9:ENST00000347934.8:ENST00000420266.6:ENST00000679398.1:ENST00000442148.6:ENST00000414108.6:ENST00000679428.1:ENST00000439676.5:ENST00000345541.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	29	2	2.38101	3.20723	4.03345	0.0704058	0.0456017	0.184298	0.164236
chr10	72695653	72695753	4450120	0	+	0.31	(0.28,0.32]	chr10	410727	22	INTRON	INTRON	MCU	ENSG00000156026.15	ENST00000373053.8:ENST00000357157.10:ENST00000604679.5:ENST00000604372.5:ENST00000603649.5:ENST00000605597.5:ENST00000536019.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	29	2	2.38101	3.20723	4.03345	0.0704058	0.0456017	0.184298	0.164236
chr15	65755059	65755156	6209418	0	-	0.309278	(0.28,0.32]	chr15	592597	21	INTRON	INTRON	DENND4A	ENSG00000174485.16	ENST00000443035.8:ENST00000431932.6:ENST00000635620.2:ENST00000564674.5:ENST00000568515.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	29	2	2.38101	3.20723	4.03345	0.0704058	0.0456017	0.184298	0.164236
chr17	62013125	62013224	6810350	0	-	0.292929	(0.28,0.32]	chr17	672920	15	INTRON	INTRON	MED13	ENSG00000108510.10	ENST00000397786.7:ENST00000583958.1	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	2.38101	3.20723	4.03345	0.0704058	0.0456017	0.184298	0.164236
chr19	39463903	39464001	7068057	0	+	0.306122	(0.28,0.32]	chr19	705849	36	INTRON	INTRON	SUPT5H	ENSG00000196235.14	ENST00000599117.5:ENST00000402194.6:ENST00000432763.7:ENST00000359191.10:ENST00000598725.5:ENST00000593727.1:ENST00000599907.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	29	2	2.38101	3.20723	4.03345	0.0704058	0.0456017	0.184298	0.164236
chr2	31990890	31990990	1090920	0	-	0.31	(0.28,0.32]	chr2	116913	277	INTRON	INTRON	MEMO1:DPY30	ENSG00000162959.14:ENSG00000162961.14	ENST00000295065.9:ENST00000446765.5:ENST00000404530.6:ENST00000490459.5:ENST00000426310.6:ENST00000413686.1:ENST00000407893.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	29	2	2.38101	3.20723	4.03345	0.0704058	0.0456017	0.184298	0.164236
chr3	36995745	36995838	1395162	0	+	0.290323	(0.28,0.32]	chr3	146166	1	SS5_PROX	SS5_PROX:INTRON	MLH1	ENSG00000076242.16	ENST00000536378.5:ENST00000673899.1:ENST00000674111.1:ENST00000673972.1:ENST00000457004.5:ENST00000673713.1:ENST00000231790.8:ENST00000673715.1:ENST00000432299.6:ENST00000673897.1:ENST00000442249.6:ENST00000454028.5:ENST00000673947.1:ENST00000456676.6:ENST00000673673.1:ENST00000674019.1:ENST00000458205.6:ENST00000413212.2:ENST00000447829.6:ENST00000673990.1:ENST00000476172.6:ENST00000673686.1:ENST00000455445.6:ENST00000435176.5:ENST00000539477.6:ENST00000441265.6:ENST00000492474.5:ENST00000429117.5:ENST00000674107.1:ENST00000466900.5:ENST00000485889.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	29	2	2.38101	3.20723	4.03345	0.0704058	0.0456017	0.184298	0.164236
chr6	18219457	18219555	2827400	0	+	0.316327	(0.28,0.32]	chr6	265560	12	INTRON	INTRON	KDM1B	ENSG00000165097.16	ENST00000546309.6:ENST00000650836.2:ENST00000449850.2:ENST00000297792.9:ENST00000642162.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	29	2	2.38101	3.20723	4.03345	0.0704058	0.0456017	0.184298	0.164236
chr7	34999295	34999394	3517338	0	-	0.30303	(0.28,0.32]	chr7	328049	90	INTRON	INTRON	DPY19L1	ENSG00000173852.16	ENST00000690503.1:ENST00000685246.1:ENST00000690666.1:ENST00000310974.8:ENST00000638088.2:ENST00000463538.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	29	2	2.38101	3.20723	4.03345	0.0704058	0.0456017	0.184298	0.164236
chr8	15674435	15674535	3705485	0	+	0.29	(0.28,0.32]	chr8	343587	2	INTRON	INTRON	TUSC3	ENSG00000104723.21	ENST00000382020.8:ENST00000515859.5:ENST00000506802.5:ENST00000503731.6:ENST00000510836.5:ENST00000509380.5:ENST00000511783.2:ENST00000508446.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	29	2	2.38101	3.20723	4.03345	0.0704058	0.0456017	0.184298	0.164236
chr8	129847051	129847139	4062215	0	-	0.318182	(0.28,0.32]	chr8	369742	3	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	CYRIB	ENSG00000153310.21	ENST00000694912.1:ENST00000519824.6:ENST00000523288.5:ENST00000519110.5:ENST00000401979.6:ENST00000523509.5:ENST00000522746.5:ENST00000517654.5:ENST00000522250.5:ENST00000519540.5:ENST00000522941.5:ENST00000520887.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	29	2	2.38101	3.20723	4.03345	0.0704058	0.0456017	0.184298	0.164236
chr19	49873797	49873896	7201761	0	-	0.323232	(0.32,0.35]	chr19	730628	6	UTR5	UTR5:EXON_MRNA:SS3_PROX:INTRON	PNKP:AKT1S1	ENSG00000039650.12:ENSG00000204673.11	ENST00000629179.1:ENST00000391834.6:ENST00000391833.5:ENST00000344175.10:ENST00000391832.7:ENST00000391835.1:ENST00000391831.5:ENST00000391830.1:ENST00000599525.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	104	2	2.53533	3.207065	3.8788	0.00233994	3.3703e-4	0.0442989	0.0170609
chr17	2691552	2691608	6706250	0	-	0.625	(0.57,1]	chr17	656620	1	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	CLUH	ENSG00000132361.18	ENST00000570628.6:ENST00000574426.7:ENST00000435359.5:ENST00000651024.2:ENST00000575014.5:ENST00000574210.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	32	2	2.91889	3.20703	3.49517	0.00719009	6.03609e-4	0.0756118	0.0226059
chr2	126661955	126662055	862067	0	+	0.61	(0.57,1]	chr2	96613	33	INTRON	INTRON	GYPC	ENSG00000136732.16	ENST00000459787.1:ENST00000259254.9:ENST00000409836.3:ENST00000356887.12	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	95	2	2.81991	3.206915	3.59392	4.33355e-5	1.87266e-6	0.00532052	9.28079e-4
chr22	20059286	20059385	7478135	0	+	0.424242	(0.408,0.44]	chr22	762668	29	INTRON	INTRON	TANGO2	ENSG00000183597.16	ENST00000401886.5:ENST00000420290.6:ENST00000432883.5:ENST00000434570.6:ENST00000447208.6:ENST00000456048.5:ENST00000411907.5:ENST00000398042.6:ENST00000399807.7:ENST00000450664.5:ENST00000450019.5:ENST00000327374.9:ENST00000430807.5:ENST00000401833.5:ENST00000434168.5:ENST00000444651.5:ENST00000462579.5:ENST00000485715.2:ENST00000490583.5:ENST00000490121.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	174	2	2.71189	3.20685	3.70181	3.3885e-4	5.69874e-6	0.0163824	0.00177762
chr11	119017261	119017360	5046425	0	-	0.353535	(0.35,0.378]	chr11	475831	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	RPS25	ENSG00000118181.11	ENST00000527791.5:ENST00000532567.5:ENST00000527673.2:ENST00000527853.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	30	2	2.47065	3.20678	3.94291	0.0386172	0.0374229	0.155878	0.142656
chr2	111166485	111166583	850297	0	+	0.357143	(0.35,0.378]	chr2	95250	24	UTR3	UTR3:EXON_MRNA	BCL2L11	ENSG00000153094.24	ENST00000610735.4:ENST00000615946.4:ENST00000619294.4:ENST00000620862.4:ENST00000621302.4:ENST00000622509.4:ENST00000622612.4:ENST00000393256.8	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	2.47065	3.20678	3.94291	0.0386172	0.0374229	0.155878	0.142656
chr2	111240791	111240889	1209244	0	-	0.357143	(0.35,0.378]	chr2	128823	4	INTRON	INTRON	MIR4435-2HG	ENSG00000172965.17	ENST00000645030.2:ENST00000642191.1:ENST00000673798.1:ENST00000645051.2:ENST00000673649.1:ENST00000673962.1:ENST00000674132.1:ENST00000669658.1:ENST00000669917.1:ENST00000661559.1:ENST00000653687.1:ENST00000667670.1:ENST00000609220.2:ENST00000656760.1:ENST00000609902.6:ENST00000666683.1:ENST00000674070.1:ENST00000662335.1:ENST00000664422.1:ENST00000673775.1:ENST00000662889.1:ENST00000665096.1:ENST00000674092.1:ENST00000673958.1:ENST00000673770.1:ENST00000673961.1:ENST00000658936.1:ENST00000662635.1:ENST00000666204.1:ENST00000659458.1:ENST00000664443.1:ENST00000670295.1:ENST00000661655.1:ENST00000666390.1:ENST00000659079.1:ENST00000660442.1:ENST00000664009.1:ENST00000439362.6:ENST00000654473.1:ENST00000664999.1:ENST00000673728.1:ENST00000659791.1:ENST00000666144.1:ENST00000659933.1:ENST00000670715.1:ENST00000656303.1:ENST00000666367.1:ENST00000666652.1:ENST00000669050.1:ENST00000667218.1:ENST00000656067.1:ENST00000653568.1:ENST00000643013.1:ENST00000673866.1:ENST00000673700.1:ENST00000443467.6:ENST00000451884.6:ENST00000669875.1:ENST00000673653.1:ENST00000673988.1:ENST00000661945.1:ENST00000669515.1:ENST00000431385.6:ENST00000655573.1	lncRNA	lncRNA	lncRNA	lncRNA	1	30	2	2.47065	3.20678	3.94291	0.0386172	0.0374229	0.155878	0.142656
chr3	33497437	33497536	1651738	0	-	0.323232	(0.32,0.35]	chr3	169412	13	UTR3	UTR3:EXON_MRNA	CLASP2	ENSG00000163539.18	ENST00000399362.8:ENST00000682230.1:ENST00000468888.6:ENST00000464961.1:ENST00000359576.9:ENST00000650653.1:ENST00000480013.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	106	2	2.37199	3.2065799999999998	4.04117	0.00465833	1.61151e-4	0.0629753	0.0116265
chr5	6755744	6755844	2316278	0	+	0.45	(0.44,0.476]	chr5	224338	9	UTR3	UTR3:EXON_MRNA	TENT4A	ENSG00000112941.14	ENST00000230859.8	protein_coding	protein_coding	protein_coding	protein_coding	4	89	2	2.79598	3.2065799999999998	3.61718	7.37432e-4	5.82325e-4	0.02495	0.0219289
chr1	21755365	21755462	396587	0	-	0.484536	(0.476,0.515]	chr1	47332	19	INTRON	INTRON	USP48	ENSG00000090686.16	ENST00000400301.5:ENST00000308271.14:ENST00000529637.5:ENST00000421625.6:ENST00000527823.5:ENST00000532737.1	protein_coding	protein_coding	protein_coding	protein_coding	10	226	2	3.12182	3.20646	3.2911	1.47828e-4	8.44588e-7	0.0111067	5.20245e-4
chr15	80065312	80065411	6071089	0	+	0.313131	(0.28,0.32]	chr15	578304	42	INTRON	INTRON	ZFAND6	ENSG00000086666.19	ENST00000613266.4:ENST00000561060.5:ENST00000559157.5:ENST00000261749.11:ENST00000561012.5:ENST00000564367.5:ENST00000558494.5:ENST00000618205.4:ENST00000560470.5	protein_coding	protein_coding	protein_coding	protein_coding	3	47	2	1.61031	3.20643	4.80255	0.0600513	0.0137406	0.190658	0.0949306
chr2	44402543	44402642	765745	0	+	0.292929	(0.28,0.32]	chr2	86775	15	INTRON	INTRON	CAMKMT	ENSG00000143919.15	ENST00000378494.8:ENST00000402247.5:ENST00000407131.5:ENST00000403853.7:ENST00000428993.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	47	2	1.61031	3.20643	4.80255	0.0600513	0.0137406	0.190658	0.0949306
chr7	139421171	139421269	3438217	0	+	0.295918	(0.28,0.32]	chr7	320382	31	INTRON	INTRON	LUC7L2:FMC1-LUC7L2	ENSG00000146963.18:ENSG00000269955.2	ENST00000541170.7:ENST00000541515.3:ENST00000619796.4:ENST00000354926.9:ENST00000456182.5:ENST00000263545.7:ENST00000498518.1:ENST00000482860.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	47	2	1.61031	3.20643	4.80255	0.0600513	0.0137406	0.190658	0.0949306
chr13	97224131	97224231	5518416	0	+	0.63	(0.57,1]	chr13	527710	12	INTRON	INTRON	MBNL2	ENSG00000139793.20	ENST00000397601.5:ENST00000343600.9:ENST00000376673.8:ENST00000679496.1:ENST00000685165.1:ENST00000345429.10:ENST00000469707.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	61	2	2.44335	3.20635	3.96935	5.18145e-4	4.27649e-5	0.0204059	0.00555805
chr12	89669304	89669404	5381568	0	-	0.41	(0.408,0.44]	chr12	513429	128	INTRON	INTRON	ATP2B1	ENSG00000070961.16	ENST00000428670.8:ENST00000551310.1	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	2.18807	3.20627	4.22447	0.0708044	0.0161655	0.184528	0.109464
chr15	28276792	28276892	6123607	0	-	0.44	(0.408,0.44]	chr15	583381	14	INTRON	INTRON	HERC2	ENSG00000128731.18	ENST00000261609.13:ENST00000564734.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	27	2	2.18807	3.20627	4.22447	0.0708044	0.0161655	0.184528	0.109464
chr16	89801302	89801399	6544664	0	-	0.42268	(0.408,0.44]	chr16	634579	13	INTRON	INTRON	FANCA	ENSG00000187741.16	ENST00000561667.2:ENST00000389301.8:ENST00000568369.6:ENST00000564475.6:ENST00000696275.1:ENST00000696287.1:ENST00000696286.1:ENST00000696274.1:ENST00000696291.1:ENST00000696276.1:ENST00000567205.2:ENST00000567284.7:ENST00000696277.1:ENST00000696292.1:ENST00000563767.2:ENST00000567621.6:ENST00000696288.1:ENST00000696293.1:ENST00000566889.5:ENST00000389302.7:ENST00000696294.1:ENST00000696295.1:ENST00000563673.5:ENST00000543736.5:ENST00000534992.5:ENST00000565582.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	27	2	2.18807	3.20627	4.22447	0.0708044	0.0161655	0.184528	0.109464
chr17	49029712	49029811	6624932	0	+	0.434343	(0.408,0.44]	chr17	646614	28	INTRON	INTRON	IGF2BP1	ENSG00000159217.10	ENST00000290341.8:ENST00000431824.2:ENST00000515586.5:ENST00000499130.6:ENST00000505562.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	27	2	2.18807	3.20627	4.22447	0.0708044	0.0161655	0.184528	0.109464
chr17	66537037	66537137	6664643	0	+	0.43	(0.408,0.44]	chr17	650332	404	INTRON	INTRON	PRKCA	ENSG00000154229.12	ENST00000413366.8:ENST00000578063.5:ENST00000284384.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	27	2	2.18807	3.20627	4.22447	0.0708044	0.0161655	0.184528	0.109464
chr19	52224622	52224721	7094626	0	+	0.424242	(0.408,0.44]	chr19	711239	20	INTRON	INTRON	PPP2R1A	ENSG00000105568.18	ENST00000322088.11:ENST00000462990.5:ENST00000391791.4	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	2.18807	3.20627	4.22447	0.0708044	0.0161655	0.184528	0.109464
chr2	42618590	42618690	761407	0	+	0.43	(0.408,0.44]	chr2	86308	40	INTRON	INTRON	MTA3	ENSG00000057935.14	ENST00000405592.5:ENST00000406652.5:ENST00000484780.5:ENST00000461256.5:ENST00000407270.7:ENST00000405094.2:ENST00000406911.5:ENST00000454356.5:ENST00000409019.5:ENST00000430763.5:ENST00000493983.1:ENST00000491314.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	27	2	2.18807	3.20627	4.22447	0.0708044	0.0161655	0.184528	0.109464
chr3	155793736	155793836	1843875	0	-	0.44	(0.408,0.44]	chr3	185505	175	INTRON	INTRON	C3orf33	ENSG00000174928.16	ENST00000340171.7:ENST00000482061.6:ENST00000534941.2:ENST00000465810.1:ENST00000486435.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	27	2	2.18807	3.20627	4.22447	0.0708044	0.0161655	0.184528	0.109464
chr5	149346517	149346614	2516837	0	+	0.42268	(0.408,0.44]	chr5	240585	3	INTRON	INTRON	GRPEL2	ENSG00000164284.15	ENST00000513661.5:ENST00000329271.8:ENST00000416916.2:ENST00000507562.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	27	2	2.18807	3.20627	4.22447	0.0708044	0.0161655	0.184528	0.109464
chr7	74875896	74875996	3556609	0	-	0.42	(0.408,0.44]	chr7	331156	71	INTRON	INTRON	STAG3L2	ENSG00000277072.5	ENST00000651031.1:ENST00000650988.1:ENST00000652688.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	1	27	2	2.18807	3.20627	4.22447	0.0708044	0.0161655	0.184528	0.109464
chr7	129728958	129729057	3413309	0	+	0.414141	(0.408,0.44]	chr7	319081	12	INTRON	INTRON	NRF1	ENSG00000106459.15	ENST00000393232.6:ENST00000223190.8:ENST00000311967.6:ENST00000393230.6:ENST00000353868.5	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	2.18807	3.20627	4.22447	0.0708044	0.0161655	0.184528	0.109464
chr8	30725200	30725299	3932722	0	-	0.434343	(0.408,0.44]	chr8	360269	128	INTRON	INTRON	GSR	ENSG00000104687.14	ENST00000221130.11:ENST00000643653.1:ENST00000643525.1:ENST00000537535.5:ENST00000541648.5:ENST00000546342.5:ENST00000523295.5:ENST00000521479.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	27	2	2.18807	3.20627	4.22447	0.0708044	0.0161655	0.184528	0.109464
chr9	96991307	96991406	4298766	0	-	0.424242	(0.408,0.44]	chr9	395262	180	INTRON	INTRON	MFSD14C	ENSG00000196312.15	ENST00000647176.1:ENST00000645073.1:ENST00000637864.1:ENST00000652726.1:ENST00000637811.1:ENST00000650909.1	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript:transcribed_unprocessed_pseudogene	1	27	2	2.18807	3.20627	4.22447	0.0708044	0.0161655	0.184528	0.109464
chrX	44996180	44996280	7649835	0	+	0.43	(0.408,0.44]	chrX	782744	191	INTRON	INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000675440.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000621147.5:ENST00000475233.1:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	27	2	2.18807	3.20627	4.22447	0.0708044	0.0161655	0.184528	0.109464
chr2	99406490	99406577	1189017	0	-	0.333333	(0.32,0.35]	chr2	127610	1	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	REV1	ENSG00000135945.10	ENST00000393445.7:ENST00000258428.8:ENST00000413697.5:ENST00000482595.5:ENST00000465835.5:ENST00000438366.1:ENST00000472000.1:ENST00000477121.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	38	2	2.13945	3.206225	4.273	0.0368357	0.0254517	0.138959	0.133676
chr12	116178415	116178513	5424554	0	-	0.306122	(0.28,0.32]	chr12	518267	32	INTRON	INTRON	MED13L:ENSG00000258337	ENSG00000123066.9:ENSG00000258337.1	ENST00000281928.9:ENST00000650226.1:ENST00000548743.2:ENST00000647567.1:ENST00000551197.2:ENST00000549373.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	2	39	2	1.90263	3.20622	4.50981	0.0503272	0.0275554	0.17488	0.123904
chr2	15546318	15546418	1073014	0	-	0.31	(0.28,0.32]	chr2	114459	66	INTRON	INTRON	NBAS	ENSG00000151779.13	ENST00000281513.10	protein_coding	protein_coding	protein_coding	protein_coding	2	39	2	1.90263	3.20622	4.50981	0.0503272	0.0275554	0.17488	0.123904
chr2	121430876	121430976	1220174	0	-	0.29	(0.28,0.32]	chr2	129918	3	INTRON	INTRON	CLASP1	ENSG00000074054.20	ENST00000263710.8:ENST00000397587.7:ENST00000541377.5:ENST00000409078.8:ENST00000455322.6:ENST00000452274.6	protein_coding	protein_coding	protein_coding	protein_coding	2	39	2	1.90263	3.20622	4.50981	0.0503272	0.0275554	0.17488	0.123904
chr4	99033929	99034029	2003097	0	+	0.3	(0.28,0.32]	chr4	199824	3	SS3_PROX	SS3_PROX:INTRON	METAP1	ENSG00000164024.12	ENST00000510209.5:ENST00000296411.11:ENST00000507537.5:ENST00000506238.5:ENST00000503247.5:ENST00000510107.5:ENST00000513199.5:ENST00000506548.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	39	2	1.90263	3.20622	4.50981	0.0503272	0.0275554	0.17488	0.123904
chr17	67188995	67189088	6825255	0	-	0.354839	(0.35,0.378]	chr17	674495	4	SS3_PROX	SS3_PROX:INTRON	HELZ	ENSG00000198265.12	ENST00000358691.10:ENST00000579953.5:ENST00000580168.5:ENST00000417253.7:ENST00000582864.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:non_stop_decay:nonsense_mediated_decay	3	43	2	1.76773	3.20615	4.64457	0.0373863	0.012652	0.155878	0.0926667
chr5	177141002	177141102	2553772	0	+	0.5	(0.476,0.515]	chr5	243927	37	INTRON	INTRON	NSD1	ENSG00000165671.22	ENST00000508896.6:ENST00000689549.1:ENST00000354179.9:ENST00000686993.1:ENST00000689326.1:ENST00000439151.7:ENST00000510954.6:ENST00000689345.1:ENST00000347982.9:ENST00000687453.1:ENST00000685206.1:ENST00000638627.3:ENST00000644863.2:ENST00000688613.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	36	2	1.79693	3.20606	4.61519	0.0649782	0.00528365	0.179417	0.0656295
chr18	9940348	9940447	6873613	0	+	0.373737	(0.35,0.378]	chr18	680892	29	INTRON	INTRON	VAPA	ENSG00000101558.14	ENST00000400000.7:ENST00000340541.4:ENST00000584796.5:ENST00000583879.5:ENST00000583475.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	98	2	2.29482	3.205985	4.11715	0.00743782	4.60289e-5	0.0746192	0.00552588
chr1	3889683	3889775	364545	0	-	0.347826	(0.32,0.35]	chr1	42791	7	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	C1orf174	ENSG00000198912.12	ENST00000474140.1:ENST00000486765.5:ENST00000361605.4:ENST00000679703.1:ENST00000680054.1:ENST00000680279.1:ENST00000681823.1:ENST00000679946.1:ENST00000680169.1:ENST00000680535.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	19	505	2	2.97901	3.20594	3.43287	1.40178e-5	2.07e-7	0.00298286	2.15311e-4
chr2	171708675	171708774	917921	0	+	0.424242	(0.408,0.44]	chr2	101104	9	INTRON	INTRON	DYNC1I2	ENSG00000077380.16	ENST00000340296.8:ENST00000452242.5:ENST00000397119.8:ENST00000410079.7:ENST00000438879.5:ENST00000508530.5:ENST00000409197.5:ENST00000456808.5:ENST00000409317.5:ENST00000409773.5:ENST00000411953.5:ENST00000409453.5:ENST00000445378.5:ENST00000435234.5:ENST00000443458.5:ENST00000412370.5:ENST00000425485.5:ENST00000423910.5:ENST00000430778.5:ENST00000422646.1:ENST00000482454.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	34	2	2.07919	3.2057849999999997	4.33238	0.0291499	0.0218901	0.14147	0.11491
chr5	32172545	32172645	2597498	0	-	0.62	(0.57,1]	chr5	246744	283	INTRON	INTRON	GOLPH3	ENSG00000113384.14	ENST00000265070.7:ENST00000503610.5:ENST00000512668.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	31	2	3.183	3.20578	3.22856	0.00254356	0.00205928	0.0448135	0.0420839
chr1	26248701	26248801	49632	0	+	0.48	(0.476,0.515]	chr1	6205	40	INTRON	INTRON	CEP85	ENSG00000130695.16	ENST00000451429.8:ENST00000640292.2:ENST00000252992.8	protein_coding	protein_coding	protein_coding	protein_coding	2	34	2	2.06491	3.2056949999999995	4.34648	0.0304733	0.0193566	0.143385	0.108861
chr11	10499356	10499456	4734398	0	+	0.49	(0.476,0.515]	chr11	438390	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	AMPD3	ENSG00000133805.16	ENST00000444303.6:ENST00000396554.7:ENST00000534047.5:ENST00000396553.7:ENST00000529834.5:ENST00000528723.5:ENST00000529507.5:ENST00000530864.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	34	2	2.06491	3.2056949999999995	4.34648	0.0304733	0.0193566	0.143385	0.108861
chr17	49340208	49340308	6792331	0	-	0.51	(0.476,0.515]	chr17	670175	173	INTRON	INTRON	ZNF652	ENSG00000198740.9	ENST00000430262.3:ENST00000508237.5:ENST00000362063.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	34	2	2.06491	3.2056949999999995	4.34648	0.0304733	0.0193566	0.143385	0.108861
chr2	74158012	74158108	1156918	0	-	0.510417	(0.476,0.515]	chr2	123696	10	INTRON	INTRON	MOB1A	ENSG00000114978.18	ENST00000396049.5	protein_coding	protein_coding	protein_coding	protein_coding	2	34	2	2.06491	3.2056949999999995	4.34648	0.0304733	0.0193566	0.143385	0.108861
chr4	39949646	39949746	2131922	0	-	0.5	(0.476,0.515]	chr4	210242	211	INTRON	INTRON	PDS5A	ENSG00000121892.15	ENST00000303538.13:ENST00000503396.5	protein_coding	protein_coding	protein_coding	protein_coding	2	34	2	2.06491	3.2056949999999995	4.34648	0.0304733	0.0193566	0.143385	0.108861
chr4	150933861	150933961	2270957	0	-	0.51	(0.476,0.515]	chr4	220921	44	INTRON	INTRON	LRBA	ENSG00000198589.14	ENST00000357115.9:ENST00000651943.2:ENST00000510413.5:ENST00000651035.1:ENST00000507224.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	34	2	2.06491	3.2056949999999995	4.34648	0.0304733	0.0193566	0.143385	0.108861
chr1	28641058	28641158	409988	0	-	0.28	[0,0.28]	chr1	49356	167	INTRON	INTRON	TAF12	ENSG00000120656.14	ENST00000685589.1:ENST00000693642.1:ENST00000688108.1:ENST00000692098.1:ENST00000691563.1:ENST00000471683.6:ENST00000495422.2:ENST00000373824.9:ENST00000685312.1:ENST00000690860.1:ENST00000691050.1:ENST00000689843.1:ENST00000263974.4:ENST00000693729.1:ENST00000690492.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	60	2	1.62991	3.2056649999999998	4.78142	0.0671202	0.00943974	0.183051	0.0861183
chr9	135941100	135941193	4372356	0	-	0.602151	(0.57,1]	chr9	402514	10	INTRON	INTRON	UBAC1	ENSG00000130560.9	ENST00000371756.4:ENST00000489050.5:ENST00000465873.5:ENST00000471163.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	15	174	2	2.96833	3.20546	3.44259	1.49626e-6	3.2203e-8	8.03394e-4	7.09131e-5
chr8	102403381	102403480	4012663	0	-	0.464646	(0.44,0.476]	chr8	367237	414	INTRON	INTRON	UBR5	ENSG00000104517.13	ENST00000520539.6:ENST00000220959.8:ENST00000521922.5	protein_coding	protein_coding	protein_coding	protein_coding	3	74	2	2.86452	3.20542	3.54632	0.00159222	9.9951e-4	0.0367961	0.0288906
chr3	172750769	172750857	1563204	0	+	0.568182	(0.515,0.57]	chr3	161697	2	UTR5	UTR5:EXON_MRNA	ECT2	ENSG00000114346.14	ENST00000232458.9:ENST00000540509.5:ENST00000392692.8:ENST00000417960.5:ENST00000428567.5:ENST00000426894.5:ENST00000366090.6	protein_coding	protein_coding	protein_coding	protein_coding	3	64	2	3.00693	3.205405	3.40388	0.00142538	7.26845e-4	0.0340865	0.0245647
chr6	15291834	15291934	2823404	0	+	0.24	[0,0.28]	chr6	265190	425	INTRON	INTRON	JARID2	ENSG00000008083.14	ENST00000341776.7:ENST00000397311.4	protein_coding	protein_coding	protein_coding	protein_coding	6	163	2	2.34095	3.2052949999999996	4.06964	0.00198013	2.7785e-4	0.0411469	0.0152952
chr1	77977188	77977288	494513	0	-	0.52	(0.515,0.57]	chr1	58567	68	INTRON	INTRON	FUBP1	ENSG00000162613.17	ENST00000370768.7:ENST00000294623.8:ENST00000370767.5:ENST00000421641.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	64	2	2.82994	3.2052899999999998	3.58064	0.00168661	6.54693e-4	0.0381778	0.0233335
chr22	39520469	39520567	7516071	0	+	0.642857	(0.57,1]	chr22	768007	4	UTR5	UTR5:EXON_MRNA	ATF4	ENSG00000128272.18	ENST00000404241.6:ENST00000674920.3:ENST00000679776.1:ENST00000337304.2:ENST00000675582.2	protein_coding	protein_coding	protein_coding	protein_coding	2	22	2	1.91937	3.2052199999999997	4.49107	0.0468438	0.00220544	0.167716	0.0417893
chr5	154772878	154772978	2527173	0	+	0.58	(0.57,1]	chr5	241610	150	INTRON	INTRON	LARP1	ENSG00000155506.19	ENST00000687700.1:ENST00000336314.9:ENST00000690816.1:ENST00000518297.6:ENST00000517616.5:ENST00000518892.1:ENST00000521577.1:ENST00000519931.5:ENST00000524248.5:ENST00000685946.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	22	2	1.91937	3.2052199999999997	4.49107	0.0468438	0.00220544	0.167716	0.0417893
chr7	105346959	105347059	3603486	0	-	0.27	[0,0.28]	chr7	336161	400	INTRON	INTRON	SRPK2	ENSG00000135250.17	ENST00000393651.8:ENST00000482897.5:ENST00000460391.5:ENST00000462282.5:ENST00000465112.5:ENST00000482862.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	108	2	2.77047	3.20514	3.63981	0.00505301	8.51767e-4	0.0621733	0.0264928
chr21	42008329	42008420	7467512	0	-	0.428571	(0.408,0.44]	chr21	760912	4	INTRON	INTRON	ZBTB21	ENSG00000173276.14	ENST00000310826.10:ENST00000398505.7:ENST00000398511.3:ENST00000398499.5:ENST00000465968.5:ENST00000398497.2:ENST00000449949.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	42	2	1.9831	3.205115	4.42713	0.018491	0.0173083	0.116694	0.104099
chr12	120763803	120763902	5434483	0	-	0.252525	[0,0.28]	chr12	519601	14	UTR3	UTR3:EXON_MRNA	SPPL3	ENSG00000157837.16	ENST00000353487.7	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	2.33055	3.2047800000000004	4.07901	0.062338	0.0494049	0.175343	0.174117
chr1	160311583	160311677	571990	0	-	0.553191	(0.515,0.57]	chr1	69324	15	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	COPA	ENSG00000122218.17	ENST00000241704.8:ENST00000696204.1:ENST00000696203.1:ENST00000696202.1:ENST00000649963.1:ENST00000696208.1:ENST00000696207.1:ENST00000696206.1:ENST00000649676.1:ENST00000368069.7:ENST00000647693.1:ENST00000649787.1:ENST00000650154.1:ENST00000647799.1:ENST00000648805.1:ENST00000647683.1:ENST00000649231.1:ENST00000648501.1:ENST00000696209.1:ENST00000696210.1:ENST00000696211.1:ENST00000647899.1:ENST00000696212.1:ENST00000696214.1:ENST00000696213.1:ENST00000696215.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	24	2	2.23915	3.2047600000000003	4.17037	0.0596178	0.0139194	0.16883600000000001	0.10247
chr11	3882212	3882312	4723729	0	+	0.57	(0.515,0.57]	chr11	437130	136	INTRON	INTRON	STIM1	ENSG00000167323.12	ENST00000525403.5:ENST00000526596.2:ENST00000300737.8:ENST00000616714.4:ENST00000527651.5:ENST00000532610.5:ENST00000532919.5:ENST00000530554.5	protein_coding	protein_coding	protein_coding	protein_coding	1	24	2	2.23915	3.2047600000000003	4.17037	0.0596178	0.0139194	0.16883600000000001	0.10247
chr14	31166597	31166697	5858593	0	-	0.52	(0.515,0.57]	chr14	556679	89	INTRON	INTRON	HECTD1	ENSG00000092148.14	ENST00000399332.6:ENST00000553700.5:ENST00000693685.1:ENST00000692835.1:ENST00000554882.6:ENST00000611816.5:ENST00000688933.1:ENST00000691390.1:ENST00000553957.6:ENST00000687002.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	24	2	2.23915	3.2047600000000003	4.17037	0.0596178	0.0139194	0.16883600000000001	0.10247
chr16	14915363	14915462	6304703	0	+	0.525253	(0.515,0.57]	chr16	603076	31	INTRON	INTRON	PKD1P3	ENSG00000183458.14	ENST00000534164.6	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	1	24	2	2.23915	3.2047600000000003	4.17037	0.0596178	0.0139194	0.16883600000000001	0.10247
chr16	89797510	89797609	6544621	0	-	0.555556	(0.515,0.57]	chr16	634567	11	INTRON	INTRON	FANCA	ENSG00000187741.16	ENST00000561667.2:ENST00000389301.8:ENST00000568369.6:ENST00000564475.6:ENST00000696275.1:ENST00000696287.1:ENST00000696286.1:ENST00000696274.1:ENST00000696291.1:ENST00000696276.1:ENST00000567205.2:ENST00000567284.7:ENST00000696277.1:ENST00000696292.1:ENST00000563767.2:ENST00000567621.6:ENST00000566409.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	24	2	2.23915	3.2047600000000003	4.17037	0.0596178	0.0139194	0.16883600000000001	0.10247
chr19	5014258	5014358	7003868	0	+	0.55	(0.515,0.57]	chr19	694800	447	INTRON	INTRON	KDM4B	ENSG00000127663.15	ENST00000159111.9:ENST00000611640.4:ENST00000588337.5:ENST00000381759.8	protein_coding	protein_coding	protein_coding	protein_coding	1	24	2	2.23915	3.2047600000000003	4.17037	0.0596178	0.0139194	0.16883600000000001	0.10247
chr19	10799556	10799653	7014606	0	+	0.56701	(0.515,0.57]	chr19	697005	6	INTRON	INTRON	DNM2	ENSG00000079805.19	ENST00000683738.1:ENST00000682285.1:ENST00000355667.11:ENST00000389253.9:ENST00000585892.5:ENST00000359692.10:ENST00000408974.8:ENST00000587830.2:ENST00000587329.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	24	2	2.23915	3.2047600000000003	4.17037	0.0596178	0.0139194	0.16883600000000001	0.10247
chr2	105370205	105370304	1200616	0	-	0.555556	(0.515,0.57]	chr2	128321	21	INTRON	INTRON	FHL2	ENSG00000115641.19	ENST00000409177.6:ENST00000322142.13:ENST00000393352.7:ENST00000344213.9:ENST00000530340.6:ENST00000393353.7:ENST00000358129.8:ENST00000409807.5:ENST00000408995.5:ENST00000452732.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	24	2	2.23915	3.2047600000000003	4.17037	0.0596178	0.0139194	0.16883600000000001	0.10247
chr3	13387603	13387702	1618271	0	-	0.525253	(0.515,0.57]	chr3	167213	8	INTRON	INTRON	NUP210	ENSG00000132182.13	ENST00000254508.7:ENST00000420141.3:ENST00000695492.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	24	2	2.23915	3.2047600000000003	4.17037	0.0596178	0.0139194	0.16883600000000001	0.10247
chr4	739407	739506	1908132	0	+	0.545455	(0.515,0.57]	chr4	191240	15	INTRON	INTRON	PCGF3	ENSG00000185619.18	ENST00000362003.9:ENST00000470161.6:ENST00000430644.5:ENST00000440452.5:ENST00000433814.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	24	2	2.23915	3.2047600000000003	4.17037	0.0596178	0.0139194	0.16883600000000001	0.10247
chr6	45187176	45187276	3102078	0	-	0.56	(0.515,0.57]	chr6	290476	808	INTRON	INTRON	SUPT3H	ENSG00000196284.17	ENST00000475057.5:ENST00000371459.6:ENST00000371460.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	24	2	2.23915	3.2047600000000003	4.17037	0.0596178	0.0139194	0.16883600000000001	0.10247
chr6	157897797	157897897	3016514	0	+	0.52	(0.515,0.57]	chr6	281391	4	INTRON	INTRON	SNX9	ENSG00000130340.17	ENST00000680863.1:ENST00000679814.1:ENST00000680464.1:ENST00000681186.1:ENST00000679732.1:ENST00000681183.1:ENST00000681534.1:ENST00000681651.1:ENST00000680089.1:ENST00000680078.1:ENST00000680974.1:ENST00000680095.1:ENST00000680015.1:ENST00000681138.1:ENST00000392185.8:ENST00000679790.1:ENST00000680495.1:ENST00000679691.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	24	2	2.23915	3.2047600000000003	4.17037	0.0596178	0.0139194	0.16883600000000001	0.10247
chr7	858057	858157	3268912	0	+	0.56	(0.515,0.57]	chr7	303628	1	SS5_PROX	SS5_PROX:INTRON	SUN1	ENSG00000164828.18	ENST00000452783.6:ENST00000389574.7:ENST00000401592.6:ENST00000413171.6:ENST00000405266.5:ENST00000425407.6:ENST00000429178.5:ENST00000433212.5:ENST00000457861.1:ENST00000475971.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	24	2	2.23915	3.2047600000000003	4.17037	0.0596178	0.0139194	0.16883600000000001	0.10247
chr7	139420877	139420975	3438214	0	+	0.55102	(0.515,0.57]	chr7	320382	28	INTRON	INTRON	LUC7L2:FMC1-LUC7L2	ENSG00000146963.18:ENSG00000269955.2	ENST00000541170.7:ENST00000541515.3:ENST00000619796.4:ENST00000354926.9:ENST00000456182.5:ENST00000263545.7:ENST00000498518.1:ENST00000482860.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	24	2	2.23915	3.2047600000000003	4.17037	0.0596178	0.0139194	0.16883600000000001	0.10247
chr6	136275031	136275131	3230969	0	-	0.21	[0,0.28]	chr6	300377	1	SS5_PROX	SS5_PROX:INTRON	BCLAF1	ENSG00000029363.17	ENST00000640069.1:ENST00000531224.6:ENST00000353331.8:ENST00000527536.5:ENST00000527613.5:ENST00000530767.5:ENST00000527759.5:ENST00000534269.5:ENST00000532384.5:ENST00000530429.5:ENST00000392348.6:ENST00000628517.2:ENST00000529826.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	84	2	2.49527	3.2046900000000003	3.91411	0.0436497	2.57009e-4	0.14882	0.0142784
chr10	125154936	125155036	4714287	0	-	0.35	(0.32,0.35]	chr10	434933	168	INTRON	INTRON	CTBP2	ENSG00000175029.17	ENST00000337195.9:ENST00000411419.6:ENST00000494626.6:ENST00000531469.5:ENST00000460976.5:ENST00000476817.1:ENST00000530884.1:ENST00000467395.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	37	2	1.95271	3.2045	4.45629	0.0431213	0.0246089	0.162255	0.12011
chr19	28539676	28539776	7166492	0	-	0.28	[0,0.28]	chr19	724193	45	INTRON	INTRON	ENSG00000283403	ENSG00000283403.1	ENST00000592347.5	lncRNA	lncRNA	lncRNA	lncRNA	6	210	2	3.03152	3.204475	3.37743	6.64225e-4	5.6355e-5	0.023494	0.00613846
chr14	103454166	103454265	5826329	0	+	0.40404	(0.378,0.408]	chr14	552855	18	INTRON	INTRON	MARK3	ENSG00000075413.19	ENST00000678179.1:ENST00000676838.1:ENST00000677348.1:ENST00000677404.1:ENST00000676694.1:ENST00000676938.1:ENST00000678619.1:ENST00000676897.1:ENST00000677214.1:ENST00000677942.1:ENST00000676830.1:ENST00000678999.1:ENST00000677228.1:ENST00000556744.2:ENST00000677104.1:ENST00000679330.1:ENST00000560417.6:ENST00000440884.7:ENST00000676475.1:ENST00000677035.1:ENST00000678022.1:ENST00000677560.1:ENST00000561314.6:ENST00000429436.7:ENST00000677118.1:ENST00000676564.1:ENST00000678169.1:ENST00000678175.1:ENST00000678897.1:ENST00000678278.1:ENST00000676645.1:ENST00000677829.1:ENST00000678302.1:ENST00000677133.1:ENST00000561164.2:ENST00000558223.6:ENST00000559328.6:ENST00000678207.1:ENST00000677360.1:ENST00000676905.1:ENST00000678343.1:ENST00000677347.1:ENST00000678071.1:ENST00000677432.1:ENST00000678237.1:ENST00000677604.1:ENST00000676518.1:ENST00000677051.1:ENST00000677857.1:ENST00000677869.1:ENST00000678423.1:ENST00000560603.6:ENST00000416682.6:ENST00000303622.13:ENST00000216288.11:ENST00000679105.1:ENST00000553942.5:ENST00000335102.9:ENST00000678091.1:ENST00000561071.5:ENST00000558698.5:ENST00000559268.5:ENST00000560731.5:ENST00000676745.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	58	2	2.84663	3.204355	3.56208	0.0133954	6.94246e-4	0.0946278	0.0240761
chr18	1350121	1350220	6941681	0	-	0.363636	(0.35,0.378]	chr18	686583	1	INTRON	INTRON	LINC00470	ENSG00000132204.14	ENST00000657423.1:ENST00000657618.1:ENST00000584090.5:ENST00000660947.1:ENST00000669242.1:ENST00000660475.1:ENST00000653775.1:ENST00000661931.1:ENST00000412816.7:ENST00000577867.5:ENST00000584492.5:ENST00000667416.1:ENST00000661852.1:ENST00000657919.1:ENST00000661646.1:ENST00000667776.1:ENST00000654559.1:ENST00000661233.1:ENST00000653213.1:ENST00000659094.1:ENST00000660964.1:ENST00000577403.6:ENST00000660358.1:ENST00000669153.1:ENST00000657121.1:ENST00000655957.1:ENST00000659289.1:ENST00000665133.1:ENST00000671558.1:ENST00000666542.1:ENST00000663512.1:ENST00000582862.6:ENST00000578835.5:ENST00000669312.1:ENST00000581430.5:ENST00000581212.1:ENST00000658090.1:ENST00000667225.1	lncRNA	lncRNA	lncRNA	lncRNA	3	82	2	2.4077	3.204335	4.00097	0.0122026	8.64759e-5	0.0910127	0.00783027
chr8	140986545	140986645	4079931	0	-	0.43	(0.408,0.44]	chr8	370590	20	INTRON	INTRON	PTK2	ENSG00000169398.20	ENST00000696786.1:ENST00000522684.5:ENST00000395218.3:ENST00000521059.5:ENST00000519993.5:ENST00000340930.7:ENST00000524357.5:ENST00000521791.5:ENST00000523067.5:ENST00000520828.5:ENST00000519881.5:ENST00000520892.5:ENST00000517453.5:ENST00000520045.5:ENST00000521332.5:ENST00000524040.5:ENST00000523679.1:ENST00000524257.5:ENST00000523797.1:ENST00000519635.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	47	2	1.6546400000000001	3.2043100000000004	4.75398	0.0329965	0.00703931	0.145298	0.0718189
chr2	99340782	99340882	834845	0	+	0.58	(0.57,1]	chr2	93660	28	INTRON	INTRON	EIF5B	ENSG00000158417.11	ENST00000617677.1:ENST00000289371.11	protein_coding	protein_coding	protein_coding	protein_coding	3	29	2	2.23972	3.204265	4.16881	0.00670296	0.00574776	0.0707084	0.0681402
chr17	51186801	51186901	6797116	0	-	0.4	(0.378,0.408]	chr17	671037	5	INTRON	INTRON	MBTD1	ENSG00000011258.16	ENST00000586178.6:ENST00000415868.5	protein_coding	protein_coding	protein_coding	protein_coding	3	43	2	1.99678	3.204235	4.41169	0.0199606	0.0177959	0.113452	0.109608
chr15	58601415	58601514	6192013	0	-	0.393939	(0.378,0.408]	chr15	589892	13	INTRON	INTRON	ADAM10	ENSG00000137845.15	ENST00000260408.8:ENST00000402627.5:ENST00000561288.1:ENST00000482945.5:ENST00000396136.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	77	2	3.08809	3.204125	3.32016	0.00268328	5.71831e-4	0.0464781	0.0217398
chr6	147690703	147690802	2990903	0	+	0.323232	(0.32,0.35]	chr6	280163	142	INTRON	INTRON	ENSG00000227681	ENSG00000227681.5	ENST00000427015.1:ENST00000432506.5:ENST00000442094.5	lncRNA	lncRNA	lncRNA	lncRNA	2	64	2	3.03597	3.204035	3.3721	0.00832487	0.00182912	0.0774402	0.0396683
chr16	89592929	89593026	6421110	0	+	0.525773	(0.515,0.57]	chr16	616407	13	INTRON	INTRON	CPNE7	ENSG00000178773.15	ENST00000319518.13:ENST00000268720.9:ENST00000529800.5:ENST00000568977.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	79	2	2.73346	3.203995	3.67453	8.38802e-4	3.27949e-4	0.0266487	0.0160995
chr12	116207960	116208060	5424851	0	-	0.42	(0.408,0.44]	chr12	518271	268	INTRON	INTRON	MED13L	ENSG00000123066.9	ENST00000281928.9:ENST00000650226.1:ENST00000548743.2:ENST00000647567.1:ENST00000551197.2	protein_coding	protein_coding	protein_coding	protein_coding	3	76	2	3.15414	3.203985	3.2538299999999998	0.00469847	2.37059e-4	0.0600108	0.0136195
chr12	132799474	132799574	5449916	0	-	0.49	(0.476,0.515]	chr12	522063	6	INTRON	INTRON	GOLGA3	ENSG00000090615.16	ENST00000204726.9:ENST00000450791.8:ENST00000693666.1:ENST00000688114.1:ENST00000687190.1:ENST00000690511.1:ENST00000685283.1:ENST00000691696.1:ENST00000691636.1:ENST00000690897.1:ENST00000690465.1:ENST00000456883.7:ENST00000692253.1:ENST00000687502.1:ENST00000688772.1:ENST00000687479.1:ENST00000690709.1:ENST00000545875.4:ENST00000688251.1:ENST00000690573.1:ENST00000685195.1:ENST00000686425.1:ENST00000693437.1:ENST00000692831.1:ENST00000688068.1:ENST00000692951.1:ENST00000689441.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	47	2	1.63962	3.203945	4.76827	0.0346854	0.00600704	0.148144	0.0674604
chr9	135937135	135937233	4372314	0	-	0.581633	(0.57,1]	chr9	402502	33	INTRON	INTRON	UBAC1	ENSG00000130560.9	ENST00000371756.4:ENST00000489050.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	63	2	1.9324	3.20392	4.47544	0.00747247	1.31958e-6	0.0772645	7.46176e-4
chr15	90993906	90994006	6259658	0	-	0.28	[0,0.28]	chr15	597350	1	SS5_PROX	SS5_PROX:INTRON	PRC1:ENSG00000284946	ENSG00000198901.14:ENSG00000284946.1	ENST00000394249.8:ENST00000361188.9:ENST00000643536.1:ENST00000442656.6:ENST00000647331.1:ENST00000553494.5:ENST00000557763.5:ENST00000417173.6:ENST00000560605.1:ENST00000557905.5:ENST00000555791.5:ENST00000555745.5:ENST00000559811.1:ENST00000556129.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	128	2	2.60532	3.20388	3.80244	0.00226845	8.09887e-4	0.0437013	0.0263656
chr11	9589194	9589293	4730963	0	+	0.282828	(0.28,0.32]	chr11	438137	7	UTR3	UTR3:EXON_MRNA:INTRON	WEE1	ENSG00000166483.12	ENST00000680141.1:ENST00000450114.7:ENST00000299613.10:ENST00000681684.1:ENST00000530712.6:ENST00000527848.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	200	2	1.95738	3.2038249999999997	4.45027	0.00222711	3.02077e-5	0.0435144	0.00456202
chr21	39248626	39248724	7464874	0	-	0.326531	(0.32,0.35]	chr21	760476	4	INTRON	INTRON	BRWD1	ENSG00000185658.14	ENST00000333229.6:ENST00000342449.8:ENST00000446924.5:ENST00000380800.7:ENST00000430093.5:ENST00000445245.5:ENST00000445668.5:ENST00000412604.1:ENST00000455867.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	88	2	2.3471	3.20377	4.06044	0.0156413	7.3644e-5	0.101393	0.00714826
chr1	23322559	23322658	399370	0	-	0.20202	[0,0.28]	chr1	47859	5	INTRON	INTRON	HNRNPR	ENSG00000125944.21	ENST00000478691.5:ENST00000302271.11:ENST00000374616.7:ENST00000374612.5:ENST00000675048.1:ENST00000606561.5:ENST00000427764.3:ENST00000463552.5:ENST00000470941.5:ENST00000476451.2	protein_coding	protein_coding	protein_coding	protein_coding	3	106	2	2.98675	3.2036749999999996	3.4206	0.00322364	0.00144853	0.0507087	0.0349199
chr15	55374949	55375049	6181568	0	-	0.37	(0.35,0.378]	chr15	589237	3	INTRON	INTRON	CCPG1	ENSG00000260916.8	ENST00000442196.8:ENST00000310958.10:ENST00000425574.7:ENST00000568808.5:ENST00000569205.5:ENST00000563171.5:ENST00000570272.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	36	2	2.10859	3.2034900000000004	4.29839	0.0294717	0.0272722	0.136494	0.128055
chr19	16846078	16846176	7027536	0	+	0.367347	(0.35,0.378]	chr19	699476	38	INTRON	INTRON	SIN3B	ENSG00000127511.10	ENST00000248054.10:ENST00000379803.5:ENST00000596802.5:ENST00000596638.1	protein_coding	protein_coding	protein_coding	protein_coding	2	36	2	2.10859	3.2034900000000004	4.29839	0.0294717	0.0272722	0.136494	0.128055
chr4	110179162	110179262	2227540	0	-	0.35	(0.32,0.35]	chr4	218024	732	INTRON	INTRON	ELOVL6	ENSG00000170522.10	ENST00000394607.7:ENST00000302274.8:ENST00000514184.5:ENST00000506625.5:ENST00000506461.1:ENST00000503885.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	87	2	2.75463	3.20325	3.65187	0.00387748	5.49434e-4	0.0543578	0.0213049
chr1	15869854	15869952	34881	0	+	0.459184	(0.44,0.476]	chr1	4252	15	INTRON	INTRON	SPEN	ENSG00000065526.12	ENST00000673875.1:ENST00000375759.8	protein_coding	protein_coding	protein_coding	protein_coding	1	25	2	2.39604	3.20321	4.01038	0.0433743	0.0404291	0.161534	0.148082
chr1	67053089	67053162	477384	0	-	0.452055	(0.44,0.476]	chr1	57454	1	SS3_PROX	SS3_PROX:INTRON	SLC35D1	ENSG00000116704.8	ENST00000235345.6	protein_coding	protein_coding	protein_coding	protein_coding	1	25	2	2.39604	3.20321	4.01038	0.0433743	0.0404291	0.161534	0.148082
chr1	160311677	160311772	571991	0	-	0.473684	(0.44,0.476]	chr1	69324	16	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	COPA	ENSG00000122218.17	ENST00000241704.8:ENST00000696204.1:ENST00000696203.1:ENST00000696202.1:ENST00000649963.1:ENST00000696208.1:ENST00000696207.1:ENST00000696206.1:ENST00000649676.1:ENST00000368069.7:ENST00000647693.1:ENST00000649787.1:ENST00000650154.1:ENST00000647799.1:ENST00000648805.1:ENST00000647683.1:ENST00000649231.1:ENST00000648501.1:ENST00000696209.1:ENST00000696210.1:ENST00000696211.1:ENST00000647899.1:ENST00000696212.1:ENST00000696214.1:ENST00000696213.1:ENST00000696215.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	25	2	2.39604	3.20321	4.01038	0.0433743	0.0404291	0.161534	0.148082
chr16	11001074	11001174	6288121	0	+	0.45	(0.44,0.476]	chr16	602172	177	INTRON	INTRON	CLEC16A	ENSG00000038532.16	ENST00000409790.6:ENST00000409552.4:ENST00000494853.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	25	2	2.39604	3.20321	4.01038	0.0433743	0.0404291	0.161534	0.148082
chr18	2562124	2562220	6942529	0	-	0.46875	(0.44,0.476]	chr18	686664	11	EXON_LNCRNA	EXON_LNCRNA:INTRON	METTL4:ENSG00000266783	ENSG00000101574.15:ENSG00000266783.1	ENST00000319888.10:ENST00000574538.2:ENST00000573134.1:ENST00000577166.5:ENST00000583253.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	1	25	2	2.39604	3.20321	4.01038	0.0433743	0.0404291	0.161534	0.148082
chr7	73493121	73493221	3554805	0	-	0.46	(0.44,0.476]	chr7	330794	2	SS3_PROX	SS3_PROX:INTRON	BAZ1B	ENSG00000009954.11	ENST00000339594.9:ENST00000404251.1	protein_coding	protein_coding	protein_coding	protein_coding	1	25	2	2.39604	3.20321	4.01038	0.0433743	0.0404291	0.161534	0.148082
chrX	2391853	2391953	7744522	0	-	0.46	(0.44,0.476]	chrX	792948	1	SS5_PROX	SS5_PROX:INTRON	DHRSX	ENSG00000169084.15	ENST00000334651.11:ENST00000412516.7:ENST00000444280.6:ENST00000441131.7:ENST00000478825.7:ENST00000430536.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	25	2	2.39604	3.20321	4.01038	0.0433743	0.0404291	0.161534	0.148082
chr9	127493681	127493779	4200752	0	+	0.571429	(0.57,1]	chr9	383575	9	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	LRSAM1	ENSG00000148356.15	ENST00000675224.1:ENST00000373324.8:ENST00000674771.1:ENST00000675641.1:ENST00000498513.6:ENST00000675572.1:ENST00000300417.11:ENST00000674784.1:ENST00000675789.1:ENST00000676349.1:ENST00000676336.1:ENST00000676170.1:ENST00000675448.1:ENST00000323301.8:ENST00000675141.1:ENST00000472068.2:ENST00000674516.1:ENST00000675883.1:ENST00000676014.1:ENST00000674970.1:ENST00000675253.1:ENST00000675657.1:ENST00000676318.1:ENST00000675945.1:ENST00000675213.1:ENST00000373322.1:ENST00000675445.1:ENST00000674621.1:ENST00000675198.1:ENST00000676399.1:ENST00000675662.1:ENST00000676137.1:ENST00000675012.1:ENST00000674511.1:ENST00000676409.1:ENST00000675521.1:ENST00000676106.1:ENST00000676035.1:ENST00000483302.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	41	2	2.6547	3.203175	3.75165	0.00346848	1.54884e-4	0.0539802	0.0113252
chr3	197120226	197120325	1901706	0	-	0.383838	(0.378,0.408]	chr3	190571	3	INTRON	INTRON	DLG1	ENSG00000075711.21	ENST00000667157.1:ENST00000346964.6:ENST00000656428.1:ENST00000663148.1:ENST00000655488.1:ENST00000357674.9:ENST00000671185.1:ENST00000658701.1:ENST00000667104.1:ENST00000661336.1:ENST00000669565.1:ENST00000670455.1:ENST00000656087.1:ENST00000670366.1:ENST00000653583.1:ENST00000653795.1:ENST00000671246.1:ENST00000661453.1:ENST00000665728.1:ENST00000664564.1:ENST00000653331.1:ENST00000660432.1:ENST00000660898.1:ENST00000657381.1:ENST00000659221.1:ENST00000654737.1:ENST00000669332.1:ENST00000659716.1:ENST00000660553.1:ENST00000664991.1:ENST00000419354.5:ENST00000661440.1:ENST00000667971.1:ENST00000670935.1:ENST00000668578.1:ENST00000666007.1:ENST00000661229.1:ENST00000660237.1:ENST00000657098.1:ENST00000661013.1:ENST00000436682.6:ENST00000452595.5:ENST00000662727.1:ENST00000422288.6:ENST00000448528.6:ENST00000443183.5:ENST00000656944.1:ENST00000392382.6:ENST00000450955.5:ENST00000658155.1:ENST00000669714.1:ENST00000654733.1:ENST00000469073.2:ENST00000419227.5:ENST00000392381.7:ENST00000471733.5:ENST00000419553.6:ENST00000447466.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	216	2	3.16842	3.20303	3.23764	4.8632e-5	5.70345e-6	0.00605189	0.00166315
chr15	101746280	101746380	6271264	0	-	0.56	(0.515,0.57]	chr15	598252	1	SS5_PROX	SS5_PROX:INTRON	ENSG00000259658	ENSG00000259658.5	ENST00000635726.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	7	132	2	2.42476	3.20283	3.9809	6.76573e-4	3.40188e-6	0.0236287	0.00131232
chr8	129964848	129964948	4063414	0	-	0.36	(0.35,0.378]	chr8	369838	154	INTRON	INTRON	CYRIB	ENSG00000153310.21	ENST00000694912.1:ENST00000523288.5:ENST00000519110.5:ENST00000401979.6:ENST00000523509.5:ENST00000517654.5:ENST00000519142.5:ENST00000518879.5:ENST00000522702.5:ENST00000521223.5:ENST00000518283.5:ENST00000523993.5:ENST00000519020.5:ENST00000518167.5:ENST00000517672.5:ENST00000522361.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	112	2	2.20693	3.202735	4.19854	0.00553341	2.91516e-5	0.0648867	0.00428471
chr1	184692884	184692982	600546	0	-	0.316327	(0.28,0.32]	chr1	71575	28	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	EDEM3	ENSG00000116406.20	ENST00000318130.13:ENST00000367512.8:ENST00000439962.1:ENST00000466392.2:ENST00000689766.1:ENST00000686047.1:ENST00000687113.1:ENST00000686225.1:ENST00000685596.1:ENST00000685249.1:ENST00000687397.1:ENST00000692170.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	94	2	2.65733	3.2026950000000003	3.74806	0.0061571	4.11943e-4	0.0676501	0.0181365
chr1	246894158	246894258	681573	0	-	0.32	(0.28,0.32]	chr1	79970	1	SS5_PROX	SS5_PROX:INTRON	AHCTF1	ENSG00000153207.16	ENST00000648844.2:ENST00000326225.3:ENST00000366508.5:ENST00000470300.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	94	2	2.65733	3.2026950000000003	3.74806	0.0061571	4.11943e-4	0.0676501	0.0181365
chr11	3894716	3894816	4723855	0	+	0.43	(0.408,0.44]	chr11	437134	62	INTRON	INTRON	STIM1	ENSG00000167323.12	ENST00000525403.5:ENST00000526596.2:ENST00000300737.8:ENST00000616714.4:ENST00000527651.5:ENST00000532610.5:ENST00000532919.5:ENST00000530554.5:ENST00000524822.5	protein_coding	protein_coding	protein_coding	protein_coding	3	75	2	2.57295	3.20256	3.83217	0.00640423	1.79883e-4	0.0694534	0.0116696
chr3	53247297	53247396	1704350	0	-	0.424242	(0.408,0.44]	chr3	175604	33	INTRON	INTRON	TKT	ENSG00000163931.17	ENST00000462138.6:ENST00000423525.6:ENST00000423516.5:ENST00000450814.6:ENST00000469678.1:ENST00000472528.5:ENST00000483706.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	56	2	3.20034	3.202355	3.20437	0.00398025	0.00306596	0.0549214	0.0509893
chrX	107100418	107100518	7859460	0	-	0.43	(0.408,0.44]	chrX	801235	112	INTRON	INTRON	RBM41	ENSG00000089682.17	ENST00000685964.1:ENST00000372487.5:ENST00000495517.5:ENST00000372479.7:ENST00000434854.1:ENST00000475556.1:ENST00000485676.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	56	2	3.20034	3.202355	3.20437	0.00398025	0.00306596	0.0549214	0.0509893
chr8	22658269	22658369	3922981	0	-	0.36	(0.35,0.378]	chr8	359040	131	INTRON	INTRON	BIN3	ENSG00000147439.14	ENST00000276416.11:ENST00000519513.5:ENST00000519335.5:ENST00000522687.5:ENST00000520292.1:ENST00000518366.1:ENST00000522268.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	31	2	2.60341	3.20235	3.80129	0.0504034	0.0275785	0.17488	0.123904
chr6	20401966	20402055	2827446	0	+	0.674157	(0.57,1]	chr6	265565	2	UTR5	UTR5:EXON_MRNA	E2F3	ENSG00000112242.16	ENST00000346618.8	protein_coding	protein_coding	protein_coding	protein_coding	7	41	2	1.44125	3.202305	4.96336	0.0284106	2.05554e-4	0.126415	0.0124557
chr12	103776546	103776645	5401145	0	-	0.40404	(0.378,0.408]	chr12	515204	44	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	NT5DC3	ENSG00000111696.12	ENST00000447799.5:ENST00000392876.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	61	2	2.53503	3.20227	3.86951	0.0319942	1.55755e-4	0.13174	0.0106835
chr6	7160078	7160178	2798888	0	+	0.37	(0.35,0.378]	chr6	263733	189	INTRON	INTRON	RREB1	ENSG00000124782.21	ENST00000379933.7:ENST00000491191.5:ENST00000471433.5:ENST00000379938.7:ENST00000467782.5:ENST00000349384.10:ENST00000334984.10:ENST00000475946.5:ENST00000483150.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	49	2	1.54563	3.202165	4.8587	0.046845	0.00695662	0.167716	0.0718189
chr4	51914569	51914668	1959293	0	+	0.424242	(0.408,0.44]	chr4	196379	11	UTR3	UTR3:EXON_MRNA	DCUN1D4	ENSG00000109184.15	ENST00000381441.7:ENST00000334635.10:ENST00000477560.5:ENST00000451288.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	122	2	3.03168	3.2020600000000004	3.37244	2.56148e-4	1.2469e-4	0.0148345	0.00953295
chr8	11824718	11824816	3702750	0	+	0.530612	(0.515,0.57]	chr8	343510	25	INTRON	INTRON	FDFT1	ENSG00000079459.13	ENST00000538689.4:ENST00000615631.4:ENST00000618539.4:ENST00000623368.3:ENST00000446331.6:ENST00000443614.6:ENST00000220584.9:ENST00000525607.5:ENST00000525283.5:ENST00000529464.5:ENST00000525900.5:ENST00000528812.5:ENST00000622850.2:ENST00000530664.5:ENST00000525954.5:ENST00000531249.2:ENST00000532266.5:ENST00000528643.5:ENST00000525777.5:ENST00000528729.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	64	2	3.04798	3.202035	3.35609	0.00174131	5.9198e-4	0.0375363	0.0221485
chr4	126586401	126586501	2236573	0	-	0.31	(0.28,0.32]	chr4	219023	1209	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	3	94	2	3.17044	3.201995	3.23355	0.004869	5.14622e-4	0.0607461	0.0203753
chr1	32375075	32375173	414991	0	-	0.540816	(0.515,0.57]	chr1	50047	4	INTRON	INTRON	BSDC1	ENSG00000160058.19	ENST00000455895.7:ENST00000444377.5:ENST00000341071.11:ENST00000526031.5:ENST00000419121.6:ENST00000446293.6:ENST00000373520.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	48	2	3.09002	3.20195	3.31388	0.00491099	0.00174704	0.0609494	0.0386026
chr7	135503274	135503373	3648893	0	-	0.525253	(0.515,0.57]	chr7	339187	645	INTRON	INTRON	CNOT4	ENSG00000080802.20	ENST00000541284.6:ENST00000451834.5:ENST00000423368.6:ENST00000361528.8:ENST00000428680.6:ENST00000315544.6:ENST00000491203.5:ENST00000498534.5:ENST00000465721.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	48	2	3.09002	3.20195	3.31388	0.00491099	0.00174704	0.0609494	0.0386026
chr1	11172508	11172608	377606	0	-	0.47	(0.44,0.476]	chr1	44235	46	INTRON	INTRON	MTOR	ENSG00000198793.13	ENST00000361445.9	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	2.29842	3.2019100000000003	4.1054	0.0552483	0.0220205	0.165463	0.123836
chr1	227282106	227282206	651357	0	-	0.47	(0.44,0.476]	chr1	77110	170	INTRON	INTRON	CDC42BPA	ENSG00000143776.20	ENST00000366766.8:ENST00000366769.7:ENST00000334218.9:ENST00000366767.7:ENST00000366764.8:ENST00000478573.6:ENST00000682551.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	27	2	2.29842	3.2019100000000003	4.1054	0.0552483	0.0220205	0.165463	0.123836
chr10	74068474	74068574	4455208	0	+	0.46	(0.44,0.476]	chr10	411401	47	INTRON	INTRON	VCL	ENSG00000035403.18	ENST00000623461.3:ENST00000372755.7:ENST00000624354.3:ENST00000211998.10:ENST00000478896.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	27	2	2.29842	3.2019100000000003	4.1054	0.0552483	0.0220205	0.165463	0.123836
chr10	74497860	74497960	4459242	0	+	0.46	(0.44,0.476]	chr10	411580	989	INTRON	INTRON	ADK	ENSG00000156110.15	ENST00000672429.1:ENST00000539909.6:ENST00000286621.7:ENST00000673352.1:ENST00000673310.1:ENST00000672920.1:ENST00000672394.1:ENST00000372734.5:ENST00000673027.1:ENST00000541550.6:ENST00000672604.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	27	2	2.29842	3.2019100000000003	4.1054	0.0552483	0.0220205	0.165463	0.123836
chr11	62871406	62871476	4799482	0	+	0.457143	(0.44,0.476]	chr11	444788	2	SS3_PROX	SS3_PROX:INTRON	SLC3A2	ENSG00000168003.18	ENST00000680729.1:ENST00000680002.1:ENST00000681467.1:ENST00000377890.6:ENST00000538084.2:ENST00000681569.1:ENST00000680725.1:ENST00000377891.6:ENST00000377889.6:ENST00000681215.1:ENST00000535296.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	27	2	2.29842	3.2019100000000003	4.1054	0.0552483	0.0220205	0.165463	0.123836
chr11	78135547	78135647	4998303	0	-	0.46	(0.44,0.476]	chr11	472386	2	SS3_PROX	SS3_PROX:INTRON	ALG8	ENSG00000159063.14	ENST00000679559.1:ENST00000680398.1:ENST00000681221.1:ENST00000527099.2:ENST00000681489.1:ENST00000525783.6:ENST00000529139.6:ENST00000680761.1:ENST00000525870.6:ENST00000680866.1:ENST00000680223.1:ENST00000526737.6:ENST00000681575.1:ENST00000299626.10:ENST00000680467.1:ENST00000679497.1:ENST00000681351.1:ENST00000679697.1:ENST00000680580.1:ENST00000526849.6:ENST00000680256.1:ENST00000680797.1:ENST00000681723.1:ENST00000680142.1:ENST00000679685.1:ENST00000681384.1:ENST00000679874.1:ENST00000679444.1:ENST00000680459.1:ENST00000681699.1:ENST00000679986.1:ENST00000680063.1:ENST00000530608.6:ENST00000681765.1:ENST00000681225.1:ENST00000681417.1:ENST00000530910.6:ENST00000680329.1:ENST00000376156.7:ENST00000679648.1:ENST00000680101.1:ENST00000680829.1:ENST00000525761.3:ENST00000532440.6:ENST00000680996.1:ENST00000532306.6:ENST00000680399.1:ENST00000679539.1:ENST00000615266.5:ENST00000681957.1:ENST00000532552.2:ENST00000680643.1:ENST00000530454.6:ENST00000525755.6:ENST00000532050.5:ENST00000526928.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	27	2	2.29842	3.2019100000000003	4.1054	0.0552483	0.0220205	0.165463	0.123836
chr14	34448299	34448399	5865998	0	-	0.46	(0.44,0.476]	chr14	557089	126	INTRON	INTRON	EGLN3:SPTSSA	ENSG00000129521.15:ENSG00000165389.7	ENST00000551935.5:ENST00000298130.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	27	2	2.29842	3.2019100000000003	4.1054	0.0552483	0.0220205	0.165463	0.123836
chr2	169532187	169532286	1261268	0	-	0.464646	(0.44,0.476]	chr2	133613	3	INTRON	INTRON	FASTKD1	ENSG00000138399.18	ENST00000453153.7:ENST00000453929.6:ENST00000490590.5:ENST00000495505.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	27	2	2.29842	3.2019100000000003	4.1054	0.0552483	0.0220205	0.165463	0.123836
chr20	35773987	35774087	7262902	0	+	0.45	(0.44,0.476]	chr20	738051	1	SS3_PROX	SS3_PROX:INTRON	PHF20	ENSG00000025293.17	ENST00000461122.5:ENST00000461405.1:ENST00000374012.8:ENST00000452270.5:ENST00000374000.8:ENST00000339089.10:ENST00000481202.5:ENST00000617560.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	27	2	2.29842	3.2019100000000003	4.1054	0.0552483	0.0220205	0.165463	0.123836
chr20	50119239	50119337	7354004	0	-	0.459184	(0.44,0.476]	chr20	749910	11	UTR3	UTR3:EXON_MRNA	PEDS1	ENSG00000240849.11	ENST00000371652.9	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	2.29842	3.2019100000000003	4.1054	0.0552483	0.0220205	0.165463	0.123836
chr22	29211929	29212029	7495541	0	+	0.46	(0.44,0.476]	chr22	764703	54	INTRON	INTRON	EMID1	ENSG00000186998.16	ENST00000334018.11:ENST00000429226.5:ENST00000404755.7:ENST00000404820.7:ENST00000430127.1:ENST00000435427.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	27	2	2.29842	3.2019100000000003	4.1054	0.0552483	0.0220205	0.165463	0.123836
chr7	100110950	100111038	3585434	0	-	0.443182	(0.44,0.476]	chr7	334180	3	SS5_PROX	SS5_PROX:INTRON	TAF6	ENSG00000106290.16	ENST00000692927.1:ENST00000691370.1:ENST00000452438.7:ENST00000688343.1:ENST00000691010.1:ENST00000684938.1:ENST00000685280.1:ENST00000686172.1:ENST00000690602.1:ENST00000688640.1:ENST00000693225.1:ENST00000691681.1:ENST00000687969.1:ENST00000684951.1:ENST00000692466.1:ENST00000687410.1:ENST00000687151.1:ENST00000685713.1:ENST00000690291.1:ENST00000692175.1:ENST00000686141.1:ENST00000688091.1:ENST00000460673.3:ENST00000686777.1:ENST00000687672.1:ENST00000689866.1:ENST00000689754.1:ENST00000687447.1:ENST00000692408.1:ENST00000690206.1:ENST00000688086.1:ENST00000690367.1:ENST00000688962.1:ENST00000687216.1:ENST00000691413.1:ENST00000686580.1:ENST00000686096.1:ENST00000689284.1:ENST00000689684.1:ENST00000688498.1:ENST00000693256.1:ENST00000693374.1:ENST00000689052.1:ENST00000687137.1:ENST00000421980.5:ENST00000453269.7:ENST00000452041.5:ENST00000472509.6:ENST00000344095.8:ENST00000493322.6:ENST00000523306.6:ENST00000687768.1:ENST00000685258.1:ENST00000690962.1:ENST00000689536.1:ENST00000440225.6:ENST00000691534.1:ENST00000451699.6:ENST00000692029.1:ENST00000487288.2:ENST00000689347.1:ENST00000690335.1:ENST00000688197.1:ENST00000487115.2:ENST00000685054.1:ENST00000437822.6:ENST00000687641.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	27	2	2.29842	3.2019100000000003	4.1054	0.0552483	0.0220205	0.165463	0.123836
chrX	154740475	154740575	7915214	0	-	0.46	(0.44,0.476]	chrX	806107	238	INTRON	INTRON	GAB3	ENSG00000160219.12	ENST00000496390.5:ENST00000424127.3:ENST00000369575.7:ENST00000369568.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	104	2	2.4345	3.20188	3.96926	0.00185115	8.75142e-5	0.0388609	0.00785215
chr8	128093031	128093129	3863085	0	+	0.244898	[0,0.28]	chr8	355605	13	INTRON	INTRON	PVT1	ENSG00000249859.13	ENST00000667305.1:ENST00000690350.1:ENST00000653522.1:ENST00000661830.1:ENST00000657289.1:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000657211.1:ENST00000653845.1:ENST00000651587.1:ENST00000692980.1:ENST00000654324.1:ENST00000657693.1:ENST00000666080.1:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000662410.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000657356.1:ENST00000657449.1:ENST00000656402.1:ENST00000667714.1:ENST00000654105.1:ENST00000664995.1:ENST00000670714.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000668123.1:ENST00000666776.1:ENST00000659912.1:ENST00000670532.1:ENST00000523068.2:ENST00000671088.1:ENST00000663461.1:ENST00000513868.6:ENST00000692433.1:ENST00000523190.7:ENST00000685606.1:ENST00000690788.1:ENST00000685634.1:ENST00000653990.1:ENST00000655783.1:ENST00000656411.1:ENST00000664742.1:ENST00000655099.1:ENST00000662709.1:ENST00000512617.7:ENST00000660122.1:ENST00000666452.1:ENST00000659666.1:ENST00000659892.1:ENST00000521600.5:ENST00000522875.5:ENST00000653497.1:ENST00000668098.1:ENST00000659106.1:ENST00000666147.1:ENST00000658350.1:ENST00000656999.1:ENST00000671092.1:ENST00000653853.1:ENST00000652492.1:ENST00000658429.1:ENST00000660781.1:ENST00000660912.1:ENST00000650930.1:ENST00000663715.1:ENST00000652883.1:ENST00000657844.1:ENST00000660659.1:ENST00000661391.1:ENST00000660146.1:ENST00000671587.1:ENST00000658018.1:ENST00000666878.1:ENST00000652993.1:ENST00000658305.1:ENST00000656077.1:ENST00000666039.1:ENST00000668619.1:ENST00000668479.1:ENST00000660069.1:ENST00000658158.1:ENST00000652728.1:ENST00000653608.1:ENST00000669509.1:ENST00000522414.2:ENST00000670535.1:ENST00000670009.1:ENST00000668215.1:ENST00000668351.1:ENST00000657682.1:ENST00000657945.1:ENST00000658065.1:ENST00000655148.1:ENST00000666223.1:ENST00000666105.1:ENST00000668480.1:ENST00000665175.1	lncRNA	lncRNA	lncRNA	lncRNA	1	37	2	2.44242	3.2018199999999997	3.96122	0.0617993	0.0491024	0.193423	0.155269
chr5	139318407	139318507	2499639	0	+	0.48	(0.476,0.515]	chr5	238946	1	SS3_PROX	SS3_PROX:INTRON	MATR3	ENSG00000280987.4:ENSG00000015479.20	ENST00000509990.5:ENST00000361059.7:ENST00000394800.6:ENST00000502929.5:ENST00000504203.5:ENST00000512876.5:ENST00000504311.5:ENST00000502499.5:ENST00000510056.5:ENST00000511249.5:ENST00000394805.8:ENST00000509918.5:ENST00000503811.5:ENST00000511978.5:ENST00000618441.5:ENST00000504643.5:ENST00000515833.2:ENST00000505625.5:ENST00000502422.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	114	2	2.59902	3.201785	3.80455	3.05324e-4	3.04782e-4	0.0161236	0.0155972
chr20	49685888	49685988	7353348	0	-	0.34	(0.32,0.35]	chr20	749846	288	INTRON	INTRON	B4GALT5	ENSG00000158470.5	ENST00000371711.4	protein_coding	protein_coding	protein_coding	protein_coding	4	52	2	1.63843	3.20172	4.76501	0.0360919	0.0114287	0.152563	0.0886611
chr17	38301558	38301657	6605143	0	+	0.393939	(0.378,0.408]	chr17	642941	17	INTRON	INTRON	MRPL45	ENSG00000278845.5	ENST00000619548.1:ENST00000613675.5	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	2.30961	3.2017	4.09379	0.055088	0.023912	0.165463	0.129075
chrX	16167603	16167682	7768240	0	-	0.64557	(0.57,1]	chrX	793929	1	SS3_PROX	SS3_PROX:INTRON	ENSG00000238178	ENSG00000238178.7	ENST00000435789.1	lncRNA	lncRNA	lncRNA	lncRNA	3	46	2	2.91889	3.2015900000000004	3.48429	0.00719009	3.68893e-5	0.0756118	0.00515993
chr11	65105008	65105107	4804110	0	+	0.353535	(0.35,0.378]	chr11	446092	75	INTRON	INTRON	VPS51	ENSG00000149823.9	ENST00000528588.5:ENST00000530773.5:ENST00000279281.8:ENST00000529180.1:ENST00000534124.5:ENST00000533656.1:ENST00000533487.1:ENST00000526578.5:ENST00000534557.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	39	2	1.81767	3.20152	4.58537	0.0640429	0.00703328	0.177882	0.0754576
chr2	181016224	181016324	936328	0	+	0.38	(0.378,0.408]	chr2	102627	263	INTRON	INTRON	UBE2E3	ENSG00000170035.16	ENST00000602303.5:ENST00000602959.5:ENST00000602479.5:ENST00000392415.6:ENST00000602291.5:ENST00000410062.9:ENST00000602499.5:ENST00000602710.5:ENST00000602762.5:ENST00000602888.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	41	2	1.59317	3.201425	4.80968	0.0603812	0.00679828	0.19151	0.0711802
chr5	154860859	154860956	2527698	0	+	0.340206	(0.32,0.35]	chr5	241732	6	INTRON	INTRON	CNOT8	ENSG00000155508.14	ENST00000521174.5:ENST00000523698.5:ENST00000517876.5:ENST00000520472.5:ENST00000519211.5:ENST00000522458.5:ENST00000403027.6:ENST00000521450.5:ENST00000519903.5:ENST00000517568.5:ENST00000524105.5:ENST00000519430.5:ENST00000285896.11:ENST00000521583.5:ENST00000520671.5:ENST00000518028.5:ENST00000519404.5:ENST00000521729.5:ENST00000519394.5:ENST00000518775.5:ENST00000522644.5:ENST00000521402.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	64	2	2.9451	3.20141	3.45772	0.011051	0.00128487	0.0873897	0.0333518
chr8	47799590	47799690	3944071	0	-	0.57	(0.515,0.57]	chr8	361586	2	SS3_PROX	SS3_PROX:INTRON	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7	protein_coding	protein_coding	protein_coding	protein_coding	3	68	2	2.39351	3.20138	4.00925	0.0100431	7.7342e-5	0.0881096	0.00784644
chr11	113874416	113874516	5044473	0	-	0.3	(0.28,0.32]	chr11	475386	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	USP28	ENSG00000048028.11	ENST00000003302.8:ENST00000545540.5:ENST00000540438.5:ENST00000537706.5:ENST00000537642.1:ENST00000542033.5:ENST00000540925.5:ENST00000544750.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	95	2	2.82151	3.2012549999999997	3.581	0.00341865	8.63544e-4	0.0517761	0.0266494
chr5	57177799	57177899	2358093	0	+	0.3	(0.28,0.32]	chr5	227562	10	INTRON	INTRON	GPBP1	ENSG00000062194.16	ENST00000424459.7:ENST00000514387.6:ENST00000506184.7:ENST00000511209.5	protein_coding	protein_coding	protein_coding	protein_coding	4	54	2	1.47299	3.20114	4.92929	0.0597769	0.0098607	0.189982	0.0838128
chr1	29009969	29010069	59916	0	+	0.48	(0.476,0.515]	chr1	7649	123	INTRON	INTRON	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000647918.1:ENST00000646800.1:ENST00000644342.1:ENST00000646189.1:ENST00000482464.6:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000646260.1:ENST00000373798.5:ENST00000644600.1:ENST00000649674.1:ENST00000643173.1:ENST00000343067.9:ENST00000644780.1:ENST00000650265.1:ENST00000648181.1:ENST00000643604.1:ENST00000648891.1:ENST00000373797.2:ENST00000349460.9:ENST00000645184.1:ENST00000645111.1:ENST00000643302.1:ENST00000645999.1:ENST00000642643.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	25	2	2.38442	3.2010949999999996	4.01777	0.0417472	0.0411361	0.161736	0.1451
chr10	114847733	114847815	4527754	0	+	0.512195	(0.476,0.515]	chr10	417538	1	INTRON	INTRON	FHIP2A	ENSG00000151553.15	ENST00000369250.7:ENST00000369248.9	protein_coding	protein_coding	protein_coding	protein_coding	1	25	2	2.38442	3.2010949999999996	4.01777	0.0417472	0.0411361	0.161736	0.1451
chr11	62795301	62795400	4961316	0	-	0.515152	(0.476,0.515]	chr11	466882	4	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	NXF1	ENSG00000162231.14	ENST00000531709.6:ENST00000294172.7:ENST00000532297.5:ENST00000527902.5:ENST00000533048.5:ENST00000533499.1:ENST00000530875.5:ENST00000533440.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	25	2	2.38442	3.2010949999999996	4.01777	0.0417472	0.0411361	0.161736	0.1451
chr11	70291755	70291855	4820622	0	+	0.5	(0.476,0.515]	chr11	449385	73	INTRON	INTRON	PPFIA1	ENSG00000131626.19	ENST00000253925.12:ENST00000389547.7:ENST00000532504.5:ENST00000530746.1:ENST00000532024.1:ENST00000648755.1:ENST00000644155.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	25	2	2.38442	3.2010949999999996	4.01777	0.0417472	0.0411361	0.161736	0.1451
chr12	19490507	19490606	5091665	0	+	0.50505	(0.476,0.515]	chr12	480980	168	INTRON	INTRON	AEBP2	ENSG00000139154.16	ENST00000538425.5:ENST00000541908.5:ENST00000266508.14:ENST00000398864.7:ENST00000673644.1:ENST00000360995.8:ENST00000673824.1	protein_coding	protein_coding	protein_coding	protein_coding	1	25	2	2.38442	3.2010949999999996	4.01777	0.0417472	0.0411361	0.161736	0.1451
chr13	99325253	99325353	5525694	0	+	0.5	(0.476,0.515]	chr13	528270	68	INTRON	INTRON	UBAC2	ENSG00000134882.16	ENST00000355700.9:ENST00000403766.8:ENST00000468067.5:ENST00000376440.6:ENST00000494576.5:ENST00000473194.5:ENST00000460562.5:ENST00000480738.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	25	2	2.38442	3.2010949999999996	4.01777	0.0417472	0.0411361	0.161736	0.1451
chr14	76333789	76333889	5797337	0	+	0.49	(0.476,0.515]	chr14	549230	225	INTRON	INTRON	ESRRB	ENSG00000119715.15	ENST00000512784.6	protein_coding	protein_coding	protein_coding	protein_coding	1	25	2	2.38442	3.2010949999999996	4.01777	0.0417472	0.0411361	0.161736	0.1451
chr2	121480514	121480613	1220688	0	-	0.494949	(0.476,0.515]	chr2	129995	102	INTRON	INTRON	CLASP1	ENSG00000074054.20	ENST00000263710.8:ENST00000397587.7:ENST00000541377.5:ENST00000409078.8:ENST00000455322.6:ENST00000452274.6:ENST00000430234.5:ENST00000418989.5:ENST00000449975.1:ENST00000474065.5:ENST00000480007.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	25	2	2.38442	3.2010949999999996	4.01777	0.0417472	0.0411361	0.161736	0.1451
chr5	61165041	61165141	2361354	0	+	0.51	(0.476,0.515]	chr5	227693	14	INTRON	INTRON	SMIM15-AS1	ENSG00000251279.2	ENST00000506902.1	lncRNA	lncRNA	lncRNA	lncRNA	1	25	2	2.38442	3.2010949999999996	4.01777	0.0417472	0.0411361	0.161736	0.1451
chr5	65724911	65725011	2369349	0	+	0.5	(0.476,0.515]	chr5	228372	21	INTRON	INTRON	NLN	ENSG00000123213.23	ENST00000380985.10:ENST00000502464.5:ENST00000514991.5:ENST00000506539.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	25	2	2.38442	3.2010949999999996	4.01777	0.0417472	0.0411361	0.161736	0.1451
chr6	108593800	108593900	2934474	0	+	0.5	(0.476,0.515]	chr6	276322	316	INTRON	INTRON	FOXO3	ENSG00000118689.15	ENST00000343882.10:ENST00000406360.2	protein_coding	protein_coding	protein_coding	protein_coding	1	25	2	2.38442	3.2010949999999996	4.01777	0.0417472	0.0411361	0.161736	0.1451
chr6	149611254	149611353	3245746	0	-	0.494949	(0.476,0.515]	chr6	301582	61	INTRON	INTRON	KATNA1	ENSG00000186625.14	ENST00000335643.12:ENST00000367411.7:ENST00000335647.9:ENST00000494504.5:ENST00000470620.1:ENST00000444282.5:ENST00000420200.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	25	2	2.38442	3.2010949999999996	4.01777	0.0417472	0.0411361	0.161736	0.1451
chr7	127922871	127922971	3405126	0	+	0.51	(0.476,0.515]	chr7	318161	177	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000465900.5:ENST00000486037.1:ENST00000484767.5:ENST00000492840.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	25	2	2.38442	3.2010949999999996	4.01777	0.0417472	0.0411361	0.161736	0.1451
chr8	30681483	30681537	3932266	0	-	0.481481	(0.476,0.515]	chr8	360189	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GSR	ENSG00000104687.14	ENST00000221130.11:ENST00000643653.1:ENST00000643525.1:ENST00000537535.5:ENST00000541648.5:ENST00000546342.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	25	2	2.38442	3.2010949999999996	4.01777	0.0417472	0.0411361	0.161736	0.1451
chr18	31934109	31934209	6961310	0	-	0.49	(0.476,0.515]	chr18	688792	22	INTRON	INTRON	TRAPPC8	ENSG00000153339.15	ENST00000283351.10:ENST00000580104.5:ENST00000582539.5:ENST00000582513.5:ENST00000578658.1:ENST00000584876.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	55	2	3.05152	3.201055	3.35059	0.0064848	0.00171515	0.0699952	0.0381936
chr12	112227220	112227320	5416151	0	-	0.49	(0.476,0.515]	chr12	517443	4	SS3_PROX	SS3_PROX:INTRON	HECTD4	ENSG00000173064.14	ENST00000550722.5:ENST00000377560.9:ENST00000682272.1:ENST00000550968.5:ENST00000547519.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	55	2	3.10264	3.201015	3.29939	0.00543163	0.00211868	0.0645052	0.0425644
chr18	51079762	51079862	6902138	0	+	0.31	(0.28,0.32]	chr18	683904	14	UTR3	UTR3:EXON_MRNA	SMAD4	ENSG00000141646.15	ENST00000398417.6:ENST00000342988.8:ENST00000591126.5:ENST00000684953.1:ENST00000688574.1:ENST00000685090.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	127	2	3.19656	3.2009299999999996	3.2053	7.42616e-4	4.54565e-4	0.0250442	0.0192381
chr2	15479583	15479682	1072340	0	-	0.262626	[0,0.28]	chr2	114416	9	INTRON	INTRON	NBAS	ENSG00000151779.13	ENST00000281513.10:ENST00000427792.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	45	2	2.20073	3.200895	4.20106	0.0695895	0.0235708	0.184298	0.128907
chr16	88772427	88772527	6540094	0	-	0.66	(0.57,1]	chr16	633998	226	INTRON	INTRON	PIEZO1	ENSG00000103335.22	ENST00000301015.14	protein_coding	protein_coding	protein_coding	protein_coding	5	63	2	2.94667	3.2008900000000002	3.45511	1.7758e-4	4.32887e-5	0.0121697	0.00532052
chr3	50569811	50569904	1425258	0	+	0.526882	(0.515,0.57]	chr3	150314	1	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	HEMK1	ENSG00000114735.10	ENST00000434410.5:ENST00000448997.5:ENST00000455834.5:ENST00000232854.9:ENST00000482974.1:ENST00000424388.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	39	2	1.63184	3.2008400000000004	4.76984	0.0545832	0.00198034	0.165292	0.0411469
chr15	28593139	28593235	5987945	0	+	0.520833	(0.515,0.57]	chr15	569244	15	INTRON	INTRON	HERC2P9	ENSG00000206149.11	ENST00000689985.1:ENST00000688694.1:ENST00000691570.1:ENST00000529537.2:ENST00000529624.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	2	48	2	3.03037	3.2008099999999997	3.37125	0.00608732	0.00136343	0.0676501	0.0339121
chr14	73440642	73440742	5919128	0	-	0.47	(0.44,0.476]	chr14	562258	302	INTRON	INTRON	NUMB	ENSG00000133961.21	ENST00000554546.5:ENST00000555238.6:ENST00000557597.5:ENST00000356296.8:ENST00000555394.5:ENST00000554394.5:ENST00000555307.5:ENST00000554315.5:ENST00000555987.5:ENST00000556112.5:ENST00000557774.5:ENST00000554818.5:ENST00000557031.5:ENST00000556600.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	35	2	2.27304	3.200735	4.12843	0.0337192	0.0158915	0.134145	0.109464
chr3	177151597	177151696	1871987	0	-	0.444444	(0.44,0.476]	chr3	187422	155	INTRON	INTRON	TBL1XR1	ENSG00000177565.18	ENST00000457928.7:ENST00000430069.5:ENST00000673974.1:ENST00000352800.10:ENST00000422442.6:ENST00000428970.5:ENST00000424913.5:ENST00000437738.5:ENST00000431421.5:ENST00000635794.1:ENST00000630796.2:ENST00000450267.5:ENST00000630833.2:ENST00000431674.5:ENST00000422066.5:ENST00000443315.5:ENST00000627825.2:ENST00000427349.5:ENST00000413084.5:ENST00000637137.1:ENST00000491623.2:ENST00000637544.1:ENST00000636187.1:ENST00000636912.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	35	2	2.27304	3.200735	4.12843	0.0337192	0.0158915	0.134145	0.109464
chrX	155908954	155909054	7741077	0	+	0.46	(0.44,0.476]	chrX	792642	80	INTRON	INTRON	VAMP7	ENSG00000124333.16	ENST00000286448.12:ENST00000479687.6:ENST00000488344.6:ENST00000463317.6:ENST00000262640.11:ENST00000460621.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	35	2	2.27304	3.200735	4.12843	0.0337192	0.0158915	0.134145	0.109464
chr10	835705	835803	4541613	0	-	0.520408	(0.515,0.57]	chr10	419243	44	INTRON	INTRON	LARP4B	ENSG00000107929.16	ENST00000688365.1:ENST00000316157.8:ENST00000690516.1:ENST00000689323.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	48	2	3.1473	3.20071	3.25412	0.00397184	0.00224554	0.0549214	0.0435144
chr10	63342384	63342484	4634154	0	-	0.42	(0.408,0.44]	chr10	426226	733	INTRON	INTRON	JMJD1C	ENSG00000171988.20	ENST00000399262.7:ENST00000633035.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	25	2	2.3975	3.200675	4.00385	0.0454568	0.040266	0.161534	0.149888
chr11	9403455	9403540	4729602	0	+	0.423529	(0.408,0.44]	chr11	437834	2	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	IPO7	ENSG00000205339.10	ENST00000379719.8:ENST00000533233.1:ENST00000527431.1:ENST00000533680.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	25	2	2.3975	3.200675	4.00385	0.0454568	0.040266	0.161534	0.149888
chr11	57794878	57794977	4793467	0	+	0.414141	(0.408,0.44]	chr11	443742	4	INTRON	INTRON	ENSG00000288534:CTNND1	ENSG00000288534.1:ENSG00000198561.16	ENST00000673781.1:ENST00000673810.1:ENST00000674116.1:ENST00000674060.1:ENST00000524630.5:ENST00000529919.5:ENST00000533189.1:ENST00000682741.1:ENST00000358694.10:ENST00000361332.8:ENST00000361391.10:ENST00000361796.9:ENST00000415361.6:ENST00000426142.6:ENST00000428599.6:ENST00000525902.5:ENST00000526357.5:ENST00000526772.5:ENST00000527467.5:ENST00000528232.5:ENST00000528621.5:ENST00000529526.5:ENST00000529873.5:ENST00000529986.5:ENST00000530094.5:ENST00000530748.5:ENST00000531014.5:ENST00000532245.5:ENST00000532463.5:ENST00000532649.5:ENST00000532787.5:ENST00000532844.5:ENST00000533667.5:ENST00000534579.5:ENST00000399050.10:ENST00000526938.5:ENST00000531007.2:ENST00000674015.1:ENST00000673826.1:ENST00000673683.1:ENST00000674106.1:ENST00000530068.5:ENST00000682814.1:ENST00000681984.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	25	2	2.3975	3.200675	4.00385	0.0454568	0.040266	0.161534	0.149888
chr11	73558243	73558343	4984527	0	-	0.41	(0.408,0.44]	chr11	470841	894	INTRON	INTRON	FAM168A	ENSG00000054965.11	ENST00000064778.8:ENST00000356467.5:ENST00000450446.6:ENST00000632101.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	25	2	2.3975	3.200675	4.00385	0.0454568	0.040266	0.161534	0.149888
chr11	77749517	77749617	4995262	0	-	0.43	(0.408,0.44]	chr11	472041	20	INTRON	INTRON	RSF1	ENSG00000048649.14	ENST00000308488.11:ENST00000528095.5:ENST00000534794.1:ENST00000440064.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	25	2	2.3975	3.200675	4.00385	0.0454568	0.040266	0.161534	0.149888
chr12	116026099	116026199	5423027	0	-	0.44	(0.408,0.44]	chr12	518245	31	INTRON	INTRON	MED13L	ENSG00000123066.9	ENST00000281928.9:ENST00000650226.1:ENST00000648737.1:ENST00000548743.2:ENST00000647567.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	25	2	2.3975	3.200675	4.00385	0.0454568	0.040266	0.161534	0.149888
chr12	124810982	124811079	5446049	0	-	0.43299	(0.408,0.44]	chr12	521261	3	INTRON	INTRON	SCARB1	ENSG00000073060.17	ENST00000339570.9:ENST00000261693.11:ENST00000679605.1:ENST00000681686.1:ENST00000680926.1:ENST00000680556.1:ENST00000680982.1:ENST00000680596.1:ENST00000681555.1:ENST00000415380.6:ENST00000681117.1:ENST00000681499.1:ENST00000538291.5:ENST00000546215.5:ENST00000535005.5:ENST00000544327.1:ENST00000539320.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	25	2	2.3975	3.200675	4.00385	0.0454568	0.040266	0.161534	0.149888
chr15	58724708	58724808	6193265	0	-	0.42	(0.408,0.44]	chr15	589988	66	INTRON	INTRON	ADAM10	ENSG00000137845.15	ENST00000260408.8:ENST00000402627.5:ENST00000561288.1:ENST00000559053.1:ENST00000558733.5:ENST00000439637.5:ENST00000497846.5:ENST00000558004.1:ENST00000560608.5:ENST00000561149.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	25	2	2.3975	3.200675	4.00385	0.0454568	0.040266	0.161534	0.149888
chr16	70387472	70387570	6510943	0	-	0.438776	(0.408,0.44]	chr16	630663	39	INTRON	INTRON	ST3GAL2	ENSG00000157350.13	ENST00000342907.3:ENST00000393640.8:ENST00000567822.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	25	2	2.3975	3.200675	4.00385	0.0454568	0.040266	0.161534	0.149888
chr17	27122108	27122208	6580046	0	+	0.42	(0.408,0.44]	chr17	639586	253	INTRON	INTRON	ENSG00000285822	ENSG00000285822.1	ENST00000649401.1	lncRNA	lncRNA	lncRNA	lncRNA	1	25	2	2.3975	3.200675	4.00385	0.0454568	0.040266	0.161534	0.149888
chr17	63807900	63808000	6661313	0	+	0.41	(0.408,0.44]	chr17	649996	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	DDX42	ENSG00000198231.14	ENST00000578681.5:ENST00000583590.5:ENST00000389924.7:ENST00000359353.9:ENST00000577940.6:ENST00000584010.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	25	2	2.3975	3.200675	4.00385	0.0454568	0.040266	0.161534	0.149888
chr18	750507	750607	6940082	0	-	0.44	(0.408,0.44]	chr18	686497	21	INTRON	INTRON	YES1	ENSG00000176105.14	ENST00000584307.5:ENST00000314574.5:ENST00000577961.5	protein_coding	protein_coding	protein_coding	protein_coding	1	25	2	2.3975	3.200675	4.00385	0.0454568	0.040266	0.161534	0.149888
chr19	21754966	21755065	7159179	0	-	0.434343	(0.408,0.44]	chr19	723737	10	INTRON	INTRON	ZNF100	ENSG00000197020.12	ENST00000358296.11:ENST00000598026.1:ENST00000596452.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	25	2	2.3975	3.200675	4.00385	0.0454568	0.040266	0.161534	0.149888
chr19	58242377	58242476	7106659	0	+	0.434343	(0.408,0.44]	chr19	713313	47	INTRON	INTRON	ZNF544	ENSG00000198131.15	ENST00000599227.5:ENST00000687789.1:ENST00000594384.5:ENST00000597240.5:ENST00000596597.5:ENST00000652201.1:ENST00000596825.5:ENST00000596929.5:ENST00000596677.5:ENST00000600220.5:ENST00000600044.5:ENST00000596652.5:ENST00000599953.1:ENST00000598880.5:ENST00000600775.5:ENST00000595981.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	25	2	2.3975	3.200675	4.00385	0.0454568	0.040266	0.161534	0.149888
chr2	97918679	97918779	1186022	0	-	0.43	(0.408,0.44]	chr2	127308	57	INTRON	INTRON	TMEM131	ENSG00000075568.17	ENST00000186436.10:ENST00000418629.6:ENST00000489507.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	25	2	2.3975	3.200675	4.00385	0.0454568	0.040266	0.161534	0.149888
chr3	128741647	128741747	1497365	0	+	0.44	(0.408,0.44]	chr3	156330	149	INTRON	INTRON	RAB7A	ENSG00000075785.14	ENST00000676214.1:ENST00000675864.1:ENST00000675712.1:ENST00000676425.1:ENST00000490093.6:ENST00000675342.1:ENST00000265062.8:ENST00000674748.1:ENST00000493186.6:ENST00000482525.5:ENST00000491681.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	25	2	2.3975	3.200675	4.00385	0.0454568	0.040266	0.161534	0.149888
chr6	27464966	27465065	3072712	0	-	0.434343	(0.408,0.44]	chr6	285627	72	INTRON	INTRON	ZNF184	ENSG00000096654.16	ENST00000211936.10:ENST00000683788.1:ENST00000377419.1	protein_coding	protein_coding	protein_coding	protein_coding	1	25	2	2.3975	3.200675	4.00385	0.0454568	0.040266	0.161534	0.149888
chr6	109113290	109113390	2935572	0	+	0.42	(0.408,0.44]	chr6	276355	68	INTRON	INTRON	CEP57L1	ENSG00000183137.15	ENST00000521277.5:ENST00000521737.5:ENST00000407272.5:ENST00000519286.5:ENST00000518329.5:ENST00000522461.5:ENST00000518853.5:ENST00000521522.5:ENST00000524064.5:ENST00000522608.5:ENST00000517392.6:ENST00000519407.5:ENST00000521503.5:ENST00000519095.5:ENST00000520610.5:ENST00000368968.6:ENST00000522490.5:ENST00000523209.5:ENST00000368970.6:ENST00000520883.5:ENST00000520761.1:ENST00000523787.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	25	2	2.3975	3.200675	4.00385	0.0454568	0.040266	0.161534	0.149888
chr19	9580208	9580308	7132939	0	-	0.46	(0.44,0.476]	chr19	718825	108	INTRON	INTRON	ZNF121	ENSG00000197961.12	ENST00000320451.7:ENST00000586602.5	protein_coding	protein_coding	protein_coding	protein_coding	2	37	2	1.96602	3.200635	4.43525	0.0426807	0.00897296	0.148082	0.0849778
chr8	48027166	48027266	3752424	0	+	0.46	(0.44,0.476]	chr8	349044	182	INTRON	INTRON	UBE2V2	ENSG00000169139.12	ENST00000523432.5:ENST00000521346.5:ENST00000523111.7:ENST00000518360.5:ENST00000517630.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	37	2	1.96602	3.200635	4.43525	0.0426807	0.00897296	0.148082	0.0849778
chr17	30493153	30493253	6589222	0	+	0.49	(0.476,0.515]	chr17	640809	4	SS5_PROX	SS5_PROX:INTRON	GOSR1	ENSG00000108587.16	ENST00000225724.9:ENST00000451249.7:ENST00000427274.6:ENST00000467337.6:ENST00000581721.5:ENST00000414833.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	90	2	2.17347	3.200625	4.22778	0.010447	2.073e-5	0.0855102	0.00353137
chr1	15502418	15502518	380525	0	-	0.38	(0.378,0.408]	chr1	44616	66	INTRON	INTRON	CASP9	ENSG00000132906.18	ENST00000546424.5:ENST00000333868.10:ENST00000348549.9:ENST00000400777.7:ENST00000424908.5:ENST00000375890.8:ENST00000474305.2:ENST00000447522.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	34	2	1.81685	3.2005600000000003	4.58427	0.0597868	0.0128325	0.189982	0.0926667
chr15	64543847	64543947	6044922	0	+	0.38	(0.378,0.408]	chr15	575696	409	INTRON	INTRON	ZNF609	ENSG00000180357.10	ENST00000326648.5:ENST00000558680.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	34	2	1.81685	3.2005600000000003	4.58427	0.0597868	0.0128325	0.189982	0.0926667
chr15	76268817	76268917	6227907	0	-	0.38	(0.378,0.408]	chr15	594907	232	INTRON	INTRON	ETFA	ENSG00000140374.17	ENST00000690610.1:ENST00000557943.6:ENST00000692691.1:ENST00000688389.1:ENST00000687293.1:ENST00000691695.1:ENST00000685863.1:ENST00000689730.1:ENST00000687975.1:ENST00000693064.1:ENST00000688908.1:ENST00000691021.1:ENST00000433983.6:ENST00000267950.12:ENST00000685548.1:ENST00000565910.6:ENST00000688154.1:ENST00000560595.6:ENST00000560726.5:ENST00000559602.5:ENST00000560044.6:ENST00000559973.5:ENST00000559386.2:ENST00000560899.5:ENST00000685118.1:ENST00000688637.1:ENST00000559075.5:ENST00000689739.1:ENST00000691071.1:ENST00000560816.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	34	2	1.81685	3.2005600000000003	4.58427	0.0597868	0.0128325	0.189982	0.0926667
chr20	318433	318531	7302524	0	-	0.408163	(0.378,0.408]	chr20	743412	17	EXON_LNCRNA	EXON_LNCRNA	NRSN2-AS1	ENSG00000225377.6	ENST00000657126.1	lncRNA	lncRNA	lncRNA	lncRNA	2	34	2	1.81685	3.2005600000000003	4.58427	0.0597868	0.0128325	0.189982	0.0926667
chr7	23357951	23358050	3502530	0	-	0.383838	(0.378,0.408]	chr7	326862	60	INTRON	INTRON	IGF2BP3	ENSG00000136231.14	ENST00000258729.8:ENST00000421467.6:ENST00000468263.5:ENST00000492771.5:ENST00000479504.5:ENST00000466809.6:ENST00000491719.5:ENST00000465058.5:ENST00000469723.5:ENST00000474105.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	34	2	1.81685	3.2005600000000003	4.58427	0.0597868	0.0128325	0.189982	0.0926667
chr7	44058685	44058781	3314015	0	+	0.40625	(0.378,0.408]	chr7	307813	3	EXON_MRNA	EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DBNL	ENSG00000136279.21	ENST00000490734.6:ENST00000456905.5:ENST00000440166.5:ENST00000441840.7:ENST00000448521.6:ENST00000452943.5:ENST00000498733.5:ENST00000429716.5:ENST00000468694.5:ENST00000494774.5:ENST00000441904.5:ENST00000411855.5:ENST00000497184.5:ENST00000432854.5:ENST00000449997.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	34	2	1.81685	3.2005600000000003	4.58427	0.0597868	0.0128325	0.189982	0.0926667
chr8	55785027	55785122	3753907	0	+	0.389474	(0.378,0.408]	chr8	349180	19	INTRON	INTRON	TGS1	ENSG00000137574.11	ENST00000260129.6:ENST00000523948.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	34	2	1.81685	3.2005600000000003	4.58427	0.0597868	0.0128325	0.189982	0.0926667
chr1	174260858	174260957	258129	0	+	0.292929	(0.28,0.32]	chr1	30773	79	INTRON	INTRON	RABGAP1L	ENSG00000152061.24	ENST00000357444.10:ENST00000251507.8:ENST00000681986.1:ENST00000457696.1	protein_coding	protein_coding	protein_coding	protein_coding	3	97	2	2.9689	3.20038	3.43186	0.00194987	0.00160646	0.0400465	0.0367961
chr17	21010062	21010160	6742825	0	-	0.571429	(0.57,1]	chr17	662022	17	INTRON	INTRON	USP22	ENSG00000124422.12	ENST00000261497.9:ENST00000537526.6:ENST00000455117.6:ENST00000579645.5:ENST00000478443.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	31	2	2.99729	3.20031	3.40333	0.00538023	9.20604e-4	0.0642754	0.0278392
chr1	32032687	32032787	62834	0	+	0.48	(0.476,0.515]	chr1	7952	1	SS3_PROX	SS3_PROX:INTRON	KHDRBS1	ENSG00000121774.18	ENST00000327300.12:ENST00000307714.12:ENST00000492989.1:ENST00000484270.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	121	2	3.00035	3.2002699999999997	3.40019	0.00109036	1.83376e-5	0.0303873	0.00328046
chr7	140810494	140810594	3662586	0	-	0.49	(0.476,0.515]	chr7	340085	11	INTRON	INTRON	BRAF	ENSG00000157764.14	ENST00000496384.7:ENST00000644969.2:ENST00000644120.1:ENST00000646891.1:ENST00000644905.1:ENST00000642228.1:ENST00000288602.11:ENST00000646730.1:ENST00000497784.2:ENST00000642272.1:ENST00000642808.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	74	2	2.72507	3.2002550000000003	3.67544	0.0029369	5.51624e-4	0.0496505	0.0216014
chr4	169660292	169660369	2080276	0	+	0.25974	[0,0.28]	chr4	205614	4	UTR5	UTR5:EXON_MRNA:INTRON	CLCN3	ENSG00000109572.15	ENST00000511092.5:ENST00000347613.8:ENST00000360642.7:ENST00000512813.5:ENST00000513761.6:ENST00000613795.4:ENST00000507875.5	protein_coding	protein_coding	protein_coding	protein_coding	4	130	2	2.97969	3.200145	3.4206	0.00322364	4.25217e-4	0.0507087	0.018441
chr1	171505372	171505472	253413	0	+	0.29	(0.28,0.32]	chr1	30096	193	INTRON	INTRON	PRRC2C	ENSG00000117523.18	ENST00000647382.2:ENST00000367742.7:ENST00000476522.5:ENST00000338920.8:ENST00000467601.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	48	2	1.81152	3.200135	4.58875	0.034446	0.0230574	0.147767	0.118056
chr11	95173055	95173154	5018777	0	-	0.30303	(0.28,0.32]	chr11	473491	77	UTR3	UTR3:EXON_MRNA	SESN3	ENSG00000149212.12	ENST00000536441.7:ENST00000278499.6	protein_coding	protein_coding	protein_coding	protein_coding	3	48	2	1.81152	3.200135	4.58875	0.034446	0.0230574	0.147767	0.118056
chr9	125239806	125239897	4352485	0	-	0.538462	(0.515,0.57]	chr9	399604	4	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HSPA5	ENSG00000044574.9	ENST00000324460.7:ENST00000680257.1:ENST00000679355.1:ENST00000681045.1:ENST00000681424.1:ENST00000681675.1:ENST00000681544.1:ENST00000680272.1:ENST00000679475.1:ENST00000680494.1:ENST00000681774.1:ENST00000680640.1:ENST00000680032.1:ENST00000681540.1:ENST00000680234.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	140	2	3.09808	3.2001049999999998	3.30213	1.21563e-4	6.50559e-6	0.00992813	0.0018059
chr2	96635839	96635936	1181175	0	-	0.57732000000000006	(0.57,1]	chr2	126526	13	INTRON	INTRON	KANSL3	ENSG00000114982.19	ENST00000354204.10:ENST00000431828.6:ENST00000487070.5:ENST00000420155.5:ENST00000670907.1:ENST00000666923.1:ENST00000597150.5:ENST00000444759.5:ENST00000452268.5:ENST00000425656.5:ENST00000448075.1:ENST00000451819.5:ENST00000416138.1:ENST00000418735.1:ENST00000475820.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	31	2	3.13254	3.20007	3.2676	0.00310655	0.00176203	0.0512344	0.0376652
chr7	101944707	101944807	3367640	0	+	0.55	(0.515,0.57]	chr7	315229	117	INTRON	INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000497815.5:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000558469.5:ENST00000560541.5:ENST00000558836.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	65	2	2.92045	3.2000200000000003	3.47959	0.00128922	8.38022e-4	0.0328334	0.0263691
chr17	61881571	61881671	6809123	0	-	0.4	(0.378,0.408]	chr17	672694	4	SS3_PROX	SS3_PROX:INTRON	INTS2	ENSG00000108506.13	ENST00000251334.7:ENST00000617492.4:ENST00000444766.7:ENST00000646745.1:ENST00000647009.1:ENST00000583822.5:ENST00000584967.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	60	2	2.92665	3.199935	3.47322	0.0086017	0.00147803	0.083729	0.0348908
chr20	3920083	3920182	7227214	0	+	0.262626	[0,0.28]	chr20	734522	9	INTRON	INTRON	PANK2	ENSG00000125779.24	ENST00000497424.5:ENST00000316562.9:ENST00000610179.7:ENST00000643504.2:ENST00000336066.8:ENST00000646394.1:ENST00000621507.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	106	2	2.8486	3.19986	3.55112	0.00254189	0.00205086	0.0465056	0.0409264
chr2	101276562	101276659	1199221	0	-	0.391753	(0.378,0.408]	chr2	128147	11	UTR3	UTR3:EXON_MRNA:INTRON	RNF149	ENSG00000163162.9	ENST00000424632.5:ENST00000295317.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	47	2	1.45712	3.19981	4.9425	0.0597975	0.00452675	0.189982	0.0595107
chr2	200858687	200858785	1310052	0	-	0.397959	(0.378,0.408]	chr2	137036	2	INTRON	INTRON	CLK1	ENSG00000013441.17	ENST00000321356.9:ENST00000461981.5:ENST00000473565.5:ENST00000432425.5:ENST00000409403.6:ENST00000434813.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	250	2	2.69418	3.199775	3.70537	2.53393e-5	6.54468e-6	0.00394395	0.00193942
chr3	47826532	47826632	1420209	0	+	0.53	(0.515,0.57]	chr3	149220	4	SS5_PROX	SS5_PROX:INTRON	DHX30	ENSG00000132153.15	ENST00000395745.6:ENST00000445061.6:ENST00000441384.5:ENST00000348968.8:ENST00000446256.6:ENST00000619982.4:ENST00000457607.1:ENST00000471082.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	77	2	2.4745	3.19975	3.925	0.00279583	8.71525e-5	0.0469265	0.00783545
chr1	15836489	15836588	34545	0	+	0.535354	(0.515,0.57]	chr1	4238	5	UTR5	UTR5:EXON_MRNA	SPEN	ENSG00000065526.12	ENST00000673875.1	protein_coding	protein_coding	protein_coding	protein_coding	3	66	2	3.02819	3.19972	3.37125	0.00136343	7.81057e-4	0.0339121	0.0257168
chr11	86036902	86037002	5014521	0	-	0.43	(0.408,0.44]	chr11	473022	49	INTRON	INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000630913.2:ENST00000528398.5:ENST00000356360.9:ENST00000534412.5:ENST00000531558.1:ENST00000531930.5:ENST00000532041.5:ENST00000525162.5:ENST00000528256.1:ENST00000528411.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	201	2	3.13044	3.19968	3.26892	7.24364e-5	5.08458e-6	0.00767422	0.00154058
chr1	229536576	229536675	653545	0	-	0.333333	(0.32,0.35]	chr1	77458	15	INTRON	INTRON	ABCB10	ENSG00000135776.5	ENST00000344517.5	protein_coding	protein_coding	protein_coding	protein_coding	6	159	2	3.02816	3.19966	3.37116	2.88118e-4	7.38256e-5	0.015631	0.00715612
chr19	28540076	28540176	7166496	0	-	0.2	[0,0.28]	chr19	724193	49	INTRON	INTRON	ENSG00000283403	ENSG00000283403.1	ENST00000592347.5	lncRNA	lncRNA	lncRNA	lncRNA	4	144	2	2.92526	3.19964	3.47402	0.00293591	1.56484e-4	0.0483234	0.0107129
chr3	150560650	150560749	1534165	0	+	0.313131	(0.28,0.32]	chr3	159855	18	INTRON	INTRON	EIF2A	ENSG00000144895.12	ENST00000487799.5:ENST00000494558.5:ENST00000474505.5:ENST00000460851.6:ENST00000406576.7:ENST00000482093.5:ENST00000469331.1:ENST00000273435.9:ENST00000490505.5:ENST00000462221.5:ENST00000477551.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	129	2	2.68602	3.19963	3.71324	0.0055712	3.06557e-5	0.0649112	0.00441979
chr19	8455574	8455674	7010870	0	+	0.46	(0.44,0.476]	chr19	696141	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	HNRNPM	ENSG00000099783.12	ENST00000348943.7:ENST00000597813.5:ENST00000600092.5:ENST00000325495.9:ENST00000600806.5:ENST00000620401.4:ENST00000594907.5:ENST00000596984.5:ENST00000601645.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	75	2	2.42996	3.19961	3.96926	0.0104804	8.75142e-5	0.0855777	0.00785215
chr12	71609966	71610058	5363008	0	-	0.326087	(0.32,0.35]	chr12	511874	5	UTR3	UTR3:EXON_MRNA	ZFC3H1	ENSG00000133858.17	ENST00000378743.9:ENST00000552994.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	159	2	2.83	3.199595	3.56919	2.25404e-4	1.10765e-4	0.013256	0.00945003
chr6	37840505	37840605	2857240	0	+	0.38	(0.378,0.408]	chr6	270225	201	INTRON	INTRON	ZFAND3	ENSG00000156639.12	ENST00000287218.9:ENST00000373391.6:ENST00000474522.5	protein_coding	protein_coding	protein_coding	protein_coding	2	37	2	2.41037	3.1995199999999997	3.98867	0.0507	0.0100185	0.156383	0.0880217
chr2	15479285	15479384	1072337	0	-	0.232323	[0,0.28]	chr2	114416	6	INTRON	INTRON	NBAS	ENSG00000151779.13	ENST00000281513.10:ENST00000427792.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	81	2	2.64309	3.199475	3.75586	0.0308646	5.203e-4	0.13151	0.0204523
chr17	60317912	60318012	6805132	0	-	0.49	(0.476,0.515]	chr17	672360	128	INTRON	INTRON	USP32	ENSG00000170832.13	ENST00000300896.9:ENST00000590133.5:ENST00000589335.5:ENST00000393003.7:ENST00000588898.1:ENST00000589761.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	55	2	2.99852	3.199275	3.40003	0.0077575	0.00139193	0.0757402	0.0341261
chr5	134173004	134173102	2726317	0	-	0.469388	(0.44,0.476]	chr5	256501	16	INTRON	INTRON	SKP1	ENSG00000113558.19	ENST00000353411.11:ENST00000522552.5:ENST00000521216.5:ENST00000517625.5:ENST00000523966.5:ENST00000522855.5:ENST00000328392.10:ENST00000519054.5:ENST00000519321.5:ENST00000520417.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	74	2	2.78129	3.199235	3.61718	0.00229634	7.37432e-4	0.0439319	0.02495
chr11	482773	482872	4719232	0	+	0.444444	(0.44,0.476]	chr11	436026	23	INTRON	INTRON	PTDSS2	ENSG00000174915.12	ENST00000532614.5:ENST00000308020.6:ENST00000531520.5:ENST00000526878.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	115	2	2.24345	3.199205	4.15496	0.00250928	3.09831e-5	0.0446195	0.00443703
chr15	43152345	43152445	6010642	0	+	0.35	(0.32,0.35]	chr15	572295	4	SS5_PROX	SS5_PROX:INTRON	TMEM62	ENSG00000137842.7	ENST00000260403.7:ENST00000564494.1	protein_coding	protein_coding	protein_coding	protein_coding	4	58	2	1.46414	3.1991949999999996	4.93425	0.065059	0.00281048	0.179599	0.0488779
chr16	56942433	56942529	6361255	0	+	0.34375	(0.32,0.35]	chr16	610632	2	SS5_PROX	SS5_PROX:INTRON	HERPUD1	ENSG00000051108.15	ENST00000439977.7:ENST00000300302.9:ENST00000344114.8:ENST00000570273.5:ENST00000379792.6:ENST00000568358.1:ENST00000564678.1:ENST00000563911.5:ENST00000568651.1:ENST00000568814.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	41	2	2.45306	3.199175	3.94529	0.0693433	0.00916394	0.184298	0.0855292
chr15	20429693	20429793	6118144	0	-	0.37	(0.35,0.378]	chr15	582352	206	INTRON	INTRON	HERC2P3	ENSG00000180229.12	ENST00000426501.5:ENST00000428453.5:ENST00000437318.5:ENST00000430598.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	3	81	2	2.69904	3.19916	3.69928	0.00438476	3.94786e-4	0.0585064	0.0178567
chr1	247320706	247320806	684347	0	-	0.3	(0.28,0.32]	chr1	80224	70	INTRON	INTRON	ZNF496	ENSG00000162714.13	ENST00000294753.8:ENST00000682384.1:ENST00000461277.2	protein_coding	protein_coding	protein_coding	protein_coding	3	94	2	2.71415	3.198845	3.68354	0.005045	5.5135e-4	0.0621586	0.0213455
chr22	17624512	17624612	7547782	0	-	0.5	(0.476,0.515]	chr22	771462	46	INTRON	INTRON	ATP6V1E1	ENSG00000131100.13	ENST00000253413.10:ENST00000399796.6:ENST00000399798.6:ENST00000413576.1:ENST00000478963.5:ENST00000460085.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	88	2	2.59304	3.1987949999999996	3.80455	0.00158794	3.04782e-4	0.0367961	0.0161236
chr15	28153330	28153429	6122299	0	-	0.525253	(0.515,0.57]	chr15	583064	1	INTRON	INTRON	HERC2	ENSG00000128731.18	ENST00000261609.13:ENST00000650509.1:ENST00000569772.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	139	2	3.10593	3.198775	3.29162	3.90524e-5	2.50623e-5	0.00533644	0.00392664
chr5	78084148	78084248	2649011	0	-	0.33	(0.32,0.35]	chr5	251637	398	INTRON	INTRON	AP3B1	ENSG00000132842.15	ENST00000519295.6:ENST00000255194.11:ENST00000695515.1:ENST00000695454.1:ENST00000695511.1:ENST00000695453.1:ENST00000695455.1:ENST00000695513.1:ENST00000695488.1:ENST00000695450.1:ENST00000695507.1:ENST00000695506.1:ENST00000695512.1:ENST00000695510.1:ENST00000695451.1:ENST00000695447.1:ENST00000695458.1:ENST00000695505.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	51	2	1.49965	3.198665	4.89768	0.0542985	0.00793135	0.182243	0.076155
chr2	55419169	55419260	1124394	0	-	0.538462	(0.515,0.57]	chr2	120590	2	UTR5	UTR5:EXON_MRNA	CCDC88A	ENSG00000115355.18	ENST00000263630.13:ENST00000436346.7:ENST00000336838.10:ENST00000642200.1:ENST00000413716.7:ENST00000647401.1:ENST00000645311.1:ENST00000646796.1:ENST00000645571.1:ENST00000645477.1:ENST00000645072.1:ENST00000644890.1:ENST00000644630.1:ENST00000647098.1:ENST00000642890.1:ENST00000647517.1:ENST00000645031.1:ENST00000645529.1:ENST00000644033.1:ENST00000644193.1:ENST00000647341.1:ENST00000644127.1:ENST00000644157.1:ENST00000471947.2:ENST00000642784.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	16	305	2	2.98237	3.19863	3.41489	3.5908e-6	1.70026e-7	0.0013551	1.88633e-4
chr3	197752604	197752702	1597353	0	+	0.244898	[0,0.28]	chr3	165493	14	INTRON	INTRON	FYTTD1	ENSG00000122068.13	ENST00000428738.5:ENST00000494309.5:ENST00000415708.6:ENST00000412924.5:ENST00000241502.9:ENST00000418169.5:ENST00000426031.5:ENST00000424384.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	35	2	2.20927	3.198585	4.1879	0.0794763	0.0396579	0.19979	0.161534
chrX	155601834	155601934	7918386	0	-	0.27	[0,0.28]	chrX	806317	562	INTRON	INTRON	TMLHE	ENSG00000185973.12	ENST00000334398.8:ENST00000675642.1:ENST00000369439.4	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	2.20927	3.198585	4.1879	0.0794763	0.0396579	0.19979	0.161534
chr5	10365735	10365835	2317767	0	+	0.37	(0.35,0.378]	chr5	224612	107	INTRON	INTRON	MARCHF6	ENSG00000145495.16	ENST00000274140.10:ENST00000449913.6:ENST00000502795.5:ENST00000511802.5:ENST00000503788.5:ENST00000640713.1:ENST00000510872.5:ENST00000507863.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	82	2	3.12905	3.198545	3.26804	0.00566312	2.47065e-4	0.0653997	0.0139149
chr1	21719340	21719440	396208	0	-	0.31	(0.28,0.32]	chr1	47259	35	INTRON	INTRON	USP48	ENSG00000090686.16	ENST00000400301.5:ENST00000308271.14:ENST00000374732.7:ENST00000529637.5:ENST00000471752.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	93	2	3.06094	3.1984500000000002	3.33596	0.00342993	8.54457e-4	0.0517761	0.0265194
chr1	205744183	205744283	623830	0	-	0.4	(0.378,0.408]	chr1	74198	130	INTRON	INTRON	NUCKS1	ENSG00000069275.13	ENST00000367142.5	protein_coding	protein_coding	protein_coding	protein_coding	2	34	2	1.89621	3.198385	4.50056	0.0488044	0.015974	0.173377	0.101453
chr10	38015272	38015369	4426938	0	+	0.391753	(0.378,0.408]	chr10	407986	26	INTRON	INTRON	ZNF33A	ENSG00000189180.16	ENST00000307441.13:ENST00000374618.7:ENST00000628825.2:ENST00000458705.6:ENST00000432900.7:ENST00000469037.2:ENST00000476504.5:ENST00000478556.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	34	2	1.89621	3.198385	4.50056	0.0488044	0.015974	0.173377	0.101453
chr10	92878576	92878675	4491917	0	+	0.393939	(0.378,0.408]	chr10	413705	296	INTRON	INTRON	EXOC6	ENSG00000138190.17	ENST00000671701.1:ENST00000672817.1:ENST00000371552.8:ENST00000443748.6:ENST00000371543.5:ENST00000260762.10	protein_coding	protein_coding	protein_coding	protein_coding	2	34	2	1.89621	3.198385	4.50056	0.0488044	0.015974	0.173377	0.101453
chr12	19163937	19164037	5088613	0	+	0.39	(0.378,0.408]	chr12	480740	311	INTRON	INTRON	PLEKHA5	ENSG00000052126.15	ENST00000429027.7:ENST00000540972.5:ENST00000299275.10:ENST00000539256.5:ENST00000538714.5:ENST00000535357.5:ENST00000538034.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	34	2	1.89621	3.198385	4.50056	0.0488044	0.015974	0.173377	0.101453
chr16	28721254	28721349	6334004	0	+	0.4	(0.378,0.408]	chr16	606431	1	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	EIF3C	ENSG00000184110.15	ENST00000566501.5:ENST00000395587.5:ENST00000331666.11:ENST00000564243.5:ENST00000566866.5:ENST00000565099.1:ENST00000565932.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	34	2	1.89621	3.198385	4.50056	0.0488044	0.015974	0.173377	0.101453
chr17	82643348	82643448	6853642	0	-	0.57	(0.515,0.57]	chr17	679384	69	INTRON	INTRON	WDR45B	ENSG00000141580.16	ENST00000392325.9:ENST00000572583.5:ENST00000573616.5:ENST00000571817.5:ENST00000574828.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	182	2	2.84923	3.1983800000000002	3.54753	1.68834e-4	3.24337e-7	0.0119215	2.85941e-4
chr6	15413161	15413261	2824620	0	+	0.55	(0.515,0.57]	chr6	265204	24	INTRON	INTRON	JARID2	ENSG00000008083.14	ENST00000341776.7:ENST00000397311.4	protein_coding	protein_coding	protein_coding	protein_coding	3	64	2	2.67733	3.198375	3.71942	0.00366712	2.61221e-4	0.0535094	0.014326
chr17	82185656	82185752	6852170	0	-	0.458333	(0.44,0.476]	chr17	679037	6	INTRON	INTRON	CCDC57	ENSG00000176155.21	ENST00000694881.1:ENST00000389641.9:ENST00000694882.1:ENST00000665763.1:ENST00000578910.2:ENST00000392343.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	40	2	2.29126	3.1983300000000003	4.1054	0.0220205	0.0165638	0.123836	0.102621
chr7	139078151	139078251	3656100	0	-	0.52	(0.515,0.57]	chr7	339428	2	SS5_PROX	SS5_PROX:INTRON	ZC3HAV1	ENSG00000105939.14	ENST00000242351.10:ENST00000464606.5:ENST00000680309.1:ENST00000471652.1:ENST00000460845.5	protein_coding	protein_coding	protein_coding	protein_coding	7	55	2	1.2325	3.198315	5.16413	0.0576823	8.14815e-4	0.188193	0.0263656
chr1	19178750	19178850	386502	0	-	0.4	(0.378,0.408]	chr1	46058	3	SS5_PROX	SS5_PROX:INTRON	UBR4	ENSG00000127481.15	ENST00000375254.8	protein_coding	protein_coding	protein_coding	protein_coding	3	41	2	1.65821	3.1982999999999997	4.73839	0.0506302	0.00837252	0.17547	0.0774402
chr1	35950461	35950561	71338	0	+	0.4	(0.378,0.408]	chr1	9138	42	INTRON	INTRON	AGO3	ENSG00000126070.20	ENST00000324350.9:ENST00000397828.3:ENST00000634486.1:ENST00000373191.9:ENST00000246314.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	41	2	1.65821	3.1982999999999997	4.73839	0.0506302	0.00837252	0.17547	0.0774402
chr7	102644688	102644788	3588967	0	-	0.38	(0.378,0.408]	chr7	335089	20	INTRON	INTRON	ENSG00000267645	ENSG00000267645.5	ENST00000476151.5	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	3	41	2	1.65821	3.1982999999999997	4.73839	0.0506302	0.00837252	0.17547	0.0774402
chr7	23364471	23364570	3502600	0	-	0.434343	(0.408,0.44]	chr7	326877	14	INTRON	INTRON	IGF2BP3	ENSG00000136231.14	ENST00000258729.8:ENST00000421467.6:ENST00000468263.5:ENST00000492771.5:ENST00000479504.5:ENST00000466809.6:ENST00000491719.5:ENST00000465058.5:ENST00000469723.5:ENST00000474105.5:ENST00000476938.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	35	2	2.27464	3.1982550000000005	4.12187	0.0354689	0.0158016	0.137535	0.109464
chr1	50884290	50884390	451496	0	-	0.44	(0.408,0.44]	chr1	54267	259	INTRON	INTRON	FAF1	ENSG00000185104.21	ENST00000396153.7:ENST00000487898.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	76	2	2.88913	3.19822	3.50731	0.00185044	8.5918e-4	0.0388609	0.0265787
chr17	15534782	15534882	6732178	0	-	0.48	(0.476,0.515]	chr17	660304	38	INTRON	INTRON	TVP23C-CDRT4:TVP23C	ENSG00000259024.6:ENSG00000175106.17	ENST00000522212.6:ENST00000557349.5:ENST00000481756.7:ENST00000518506.4:ENST00000225576.7:ENST00000581273.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	74	2	2.54157	3.19821	3.85485	0.00697457	1.63076e-4	0.0718189	0.0109774
chr6	34638500	34638600	3085635	0	-	0.5	(0.476,0.515]	chr6	288679	312	INTRON	INTRON	ILRUN	ENSG00000196821.10	ENST00000374026.7:ENST00000374023.8:ENST00000374021.1	protein_coding	protein_coding	protein_coding	protein_coding	3	74	2	2.54157	3.19821	3.85485	0.00697457	1.63076e-4	0.0718189	0.0109774
chr1	246069259	246069359	676324	0	-	0.31	(0.28,0.32]	chr1	79717	158	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000391836.3:ENST00000464398.1:ENST00000453676.5:ENST00000462422.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	34	2	2.51488	3.198165	3.88145	0.0561985	0.0380957	0.18407	0.141678
chr11	8686797	8686896	4729028	0	+	0.30303	(0.28,0.32]	chr11	437780	11	UTR3	UTR3:EXON_MRNA	RPL27A	ENSG00000166441.13	ENST00000314138.11	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	2.51488	3.198165	3.88145	0.0561985	0.0380957	0.18407	0.141678
chr12	131935322	131935420	5250066	0	+	0.316327	(0.28,0.32]	chr12	499261	5	INTRON	INTRON	PUS1	ENSG00000177192.14	ENST00000443358.6:ENST00000322060.9:ENST00000376649.8:ENST00000542167.2:ENST00000538037.5:ENST00000535067.5:ENST00000537484.1	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	2.51488	3.198165	3.88145	0.0561985	0.0380957	0.18407	0.141678
chr5	90681214	90681314	2421647	0	+	0.3	(0.28,0.32]	chr5	232917	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	ADGRV1	ENSG00000164199.18	ENST00000405460.9:ENST00000640403.1:ENST00000639473.1:ENST00000639431.1:ENST00000640779.1:ENST00000640012.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	34	2	2.51488	3.198165	3.88145	0.0561985	0.0380957	0.18407	0.141678
chr7	66993917	66994014	3540204	0	-	0.298969	(0.28,0.32]	chr7	330307	1	SS5_PROX	SS5_PROX:INTRON	SBDS	ENSG00000126524.11	ENST00000246868.7:ENST00000414306.5:ENST00000490953.5:ENST00000463579.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	34	2	2.51488	3.198165	3.88145	0.0561985	0.0380957	0.18407	0.141678
chr1	90960274	90960374	501908	0	-	0.37	(0.35,0.378]	chr1	59492	186	INTRON	INTRON	ZNF644	ENSG00000122482.22	ENST00000370440.5:ENST00000337393.10:ENST00000347275.9:ENST00000361321.5:ENST00000467231.5:ENST00000498303.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	29	2	2.32443	3.1981450000000002	4.07186	0.0544216	0.0279478	0.164972	0.137011
chr7	133075992	133076092	3645829	0	-	0.37	(0.35,0.378]	chr7	338886	54	INTRON	INTRON	CHCHD3	ENSG00000106554.13	ENST00000262570.10:ENST00000448878.6:ENST00000423635.5:ENST00000457942.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	29	2	2.32443	3.1981450000000002	4.07186	0.0544216	0.0279478	0.164972	0.137011
chrX	24850067	24850167	7633293	0	+	0.37	(0.35,0.378]	chrX	781789	60	INTRON	INTRON	POLA1	ENSG00000101868.13	ENST00000672178.1:ENST00000379068.8:ENST00000379059.7:ENST00000611764.2:ENST00000679301.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	29	2	2.32443	3.1981450000000002	4.07186	0.0544216	0.0279478	0.164972	0.137011
chrX	48932085	48932183	7815814	0	-	0.367347	(0.35,0.378]	chrX	796844	57	INTRON	INTRON	OTUD5	ENSG00000068308.15	ENST00000376488.8:ENST00000396743.7:ENST00000455452.5:ENST00000156084.8:ENST00000428668.2:ENST00000484499.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	29	2	2.32443	3.1981450000000002	4.07186	0.0544216	0.0279478	0.164972	0.137011
chr1	164614	164702	352955	0	-	0.397727	(0.378,0.408]	chr1	40816	5	EXON_LNCRNA	EXON_LNCRNA	ENSG00000241860	ENSG00000241860.7	ENST00000466557.6	lncRNA	lncRNA	lncRNA	lncRNA	8	190	2	2.50447	3.19813	3.89179	8.06815e-4	6.77688e-7	0.026349	4.55248e-4
chr1	225864918	225865016	646043	0	-	0.469388	(0.44,0.476]	chr1	76492	11	EXON_LNCRNA	EXON_LNCRNA:INTRON	TMEM63A	ENSG00000196187.12	ENST00000366835.8:ENST00000474478.5:ENST00000537914.5:ENST00000483779.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	56	2	3.08591	3.19801	3.31011	0.00481262	0.00259023	0.0638089	0.0452934
chr6	16253861	16253961	2826127	0	+	0.46	(0.44,0.476]	chr6	265356	31	INTRON	INTRON	GMPR	ENSG00000137198.10	ENST00000259727.5	protein_coding	protein_coding	protein_coding	protein_coding	2	56	2	3.08591	3.19801	3.31011	0.00481262	0.00259023	0.0638089	0.0452934
chr1	227309504	227309604	651631	0	-	0.36	(0.35,0.378]	chr1	77110	444	INTRON	INTRON	CDC42BPA	ENSG00000143776.20	ENST00000366766.8:ENST00000366769.7:ENST00000334218.9:ENST00000366767.7:ENST00000366764.8:ENST00000478573.6:ENST00000682551.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	112	2	2.27878	3.197965	4.11715	0.0041508	4.60289e-5	0.0568675	0.00552588
chr11	34054171	34054265	4767672	0	+	0.297872	(0.28,0.32]	chr11	440943	1	INTRON	INTRON	CAPRIN1	ENSG00000135387.21	ENST00000341394.9:ENST00000528856.5:ENST00000389645.7:ENST00000534042.5:ENST00000534825.5:ENST00000532820.5:ENST00000530820.5:ENST00000529307.1:ENST00000526494.5:ENST00000532755.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	69	2	3.04485	3.197965	3.35108	0.00894006	0.00221345	0.0799922	0.0435144
chr15	28243508	28243606	6123252	0	-	0.326531	(0.32,0.35]	chr15	583285	44	INTRON	INTRON	HERC2	ENSG00000128731.18	ENST00000261609.13	protein_coding	protein_coding	protein_coding	protein_coding	2	64	2	3.16237	3.1978400000000002	3.23331	0.00550276	0.00315414	0.0648867	0.0515261
chr3	10145713	10145813	1363153	0	+	0.29	(0.28,0.32]	chr3	143671	23	INTRON	INTRON	VHL	ENSG00000134086.9	ENST00000696153.1:ENST00000256474.3:ENST00000696142.1:ENST00000345392.2:ENST00000696143.1:ENST00000477538.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	95	2	3.12332	3.197765	3.27221	0.00698537	3.15212e-4	0.0718189	0.0159645
chr17	75901360	75901448	6839072	0	-	0.602273	(0.57,1]	chr17	676138	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MRPL38	ENSG00000204316.13	ENST00000309352.4:ENST00000477371.5:ENST00000471434.1:ENST00000477736.5:ENST00000493104.5:ENST00000494179.5:ENST00000585475.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	41	2	2.50742	3.19774	3.88806	0.00631173	6.56297e-5	0.0687526	0.0067007
chr17	75227559	75227656	6674495	0	+	0.556701	(0.515,0.57]	chr17	651401	7	INTRON	INTRON	NUP85	ENSG00000125450.11	ENST00000245544.9:ENST00000579324.5:ENST00000581104.5:ENST00000579298.5:ENST00000578830.5:ENST00000579557.5:ENST00000577645.5:ENST00000583070.5:ENST00000580879.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	117	2	2.78481	3.19768	3.61055	2.42617e-4	2.42273e-5	0.0143397	0.00385018
chr6	140897887	140897987	3241130	0	-	0.53	(0.515,0.57]	chr6	301068	3	SS5_PROX	SS5_PROX:INTRON	ENSG00000234147	ENSG00000234147.3	ENST00000650553.2:ENST00000692940.1:ENST00000683641.1:ENST00000682196.1:ENST00000684320.1:ENST00000683889.1:ENST00000683062.1:ENST00000682608.1:ENST00000455011.2:ENST00000682812.1:ENST00000683340.1:ENST00000683841.1:ENST00000683589.1:ENST00000684268.1:ENST00000683480.1:ENST00000684120.1	lncRNA	lncRNA	lncRNA	lncRNA	3	64	2	2.7208	3.1976649999999998	3.67453	0.00306828	3.27949e-4	0.0494933	0.0160995
chr7	128754161	128754261	3408529	0	+	0.41	(0.408,0.44]	chr7	318437	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	CALU	ENSG00000128595.17	ENST00000535011.6:ENST00000542996.6:ENST00000249364.9:ENST00000449187.6:ENST00000479257.5	protein_coding	protein_coding	protein_coding	protein_coding	10	214	2	2.89364	3.19759	3.50154	1.91686e-5	1.44127e-5	0.00355096	0.00284474
chr16	11875360	11875460	6445982	0	-	0.33	(0.32,0.35]	chr16	621049	2	SS5_PROX	SS5_PROX:INTRON	GSPT1	ENSG00000103342.13	ENST00000434724.7:ENST00000439887.6:ENST00000565267.5:ENST00000563468.5:ENST00000420576.6	protein_coding	protein_coding	protein_coding	protein_coding	2	65	2	3.07975	3.19754	3.31533	0.00554235	0.00323121	0.0674105	0.0507087
chr19	1422995	1423094	6995256	0	+	0.636364	(0.57,1]	chr19	693200	2	INTRON	INTRON	DAZAP1	ENSG00000071626.17	ENST00000336761.10:ENST00000233078.9:ENST00000592522.5:ENST00000586579.5:ENST00000587079.5:ENST00000592453.2:ENST00000589484.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	48	535	2	2.91523	3.19754	3.47985	8.51315e-9	6.55701e-11	3.1912e-5	8.07763e-7
chr6	35834718	35834815	3087937	0	-	0.329897	(0.32,0.35]	chr6	288803	19	UTR3	UTR3:EXON_MRNA	SRPK1	ENSG00000096063.16	ENST00000373825.7:ENST00000423325.6:ENST00000346162.10:ENST00000361690.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	265	2	3.08491	3.19754	3.31017	3.36262e-5	1.13176e-5	0.00488303	0.00249109
chr2	61394352	61394452	1129783	0	-	0.43	(0.408,0.44]	chr2	121475	1	SS5_PROX	SS5_PROX:INTRON	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000453133.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	74	2	2.94481	3.1975	3.45019	0.00152664	0.00110214	0.0353936	0.03038
chr15	63566275	63566374	6042538	0	+	0.333333	(0.32,0.35]	chr15	575436	29	INTRON	INTRON	USP3	ENSG00000140455.17	ENST00000540797.5:ENST00000380324.8:ENST00000558157.5:ENST00000561326.5:ENST00000559873.5:ENST00000559192.5:ENST00000268049.11:ENST00000558285.5:ENST00000559257.5:ENST00000538686.6:ENST00000559711.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	87	2	3.16237	3.1974	3.23243	0.00550276	3.30385e-4	0.0648867	0.0161444
chr11	62645661	62645761	4960364	0	-	0.56	(0.515,0.57]	chr11	466618	52	INTRON	INTRON	GANAB	ENSG00000089597.18	ENST00000346178.8:ENST00000532402.5:ENST00000356638.8:ENST00000540933.5:ENST00000648273.1:ENST00000534779.5:ENST00000534613.5:ENST00000525994.1:ENST00000526210.1:ENST00000526392.1:ENST00000529737.5:ENST00000534419.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	48	2	2.96814	3.1972899999999997	3.42644	0.00756432	0.00106731	0.0749063	0.0300133
chr6	159689928	159690027	3253838	0	-	0.464646	(0.44,0.476]	chr6	302454	13	INTRON	INTRON	SOD2	ENSG00000112096.19	ENST00000538183.7:ENST00000546260.5:ENST00000367055.8:ENST00000367054.6:ENST00000546087.5:ENST00000444946.6:ENST00000337404.8:ENST00000541573.5:ENST00000540491.1:ENST00000545162.5:ENST00000535561.5:ENST00000537657.5:ENST00000401980.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	44	2	1.61163	3.19728	4.78293	0.0598319	0.00292033	0.169278	0.0494641
chr5	53950018	53950118	2617304	0	-	0.27	[0,0.28]	chr5	248835	380	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	129	2	2.22889	3.19726	4.16563	0.0128832	7.75265e-5	0.0926667	0.00735438
chr10	48311572	48311672	4431037	0	+	0.36	(0.35,0.378]	chr10	408563	29	INTRON	INTRON	MAPK8	ENSG00000107643.17	ENST00000395611.7:ENST00000432379.5:ENST00000374189.6:ENST00000429041.6:ENST00000374179.8:ENST00000426557.5:ENST00000476134.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	35	2	1.82887	3.197185	4.5655	0.0584878	0.0155464	0.189395	0.100909
chr11	110246704	110246804	5040820	0	-	0.36	(0.35,0.378]	chr11	474680	87	INTRON	INTRON	RDX	ENSG00000137710.17	ENST00000645527.1:ENST00000530749.5:ENST00000528498.5:ENST00000528900.5:ENST00000530301.5:ENST00000647231.1:ENST00000646663.1:ENST00000645495.2:ENST00000544551.5:ENST00000530131.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	35	2	1.82887	3.197185	4.5655	0.0584878	0.0155464	0.189395	0.100909
chr11	8683779	8683862	4728989	0	+	0.506024	(0.476,0.515]	chr11	437762	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	RPL27A	ENSG00000166441.13	ENST00000531978.5:ENST00000530585.5:ENST00000524496.5:ENST00000314138.11:ENST00000532359.5:ENST00000534599.5:ENST00000530022.5:ENST00000526562.5:ENST00000525981.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	230	2	2.48997	3.196965	3.90396	5.57267e-4	3.29598e-7	0.021494	3.12285e-4
chr2	210005161	210005260	1000347	0	+	0.50505	(0.476,0.515]	chr2	107376	13	INTRON	INTRON	RPE	ENSG00000197713.15	ENST00000354506.10:ENST00000436630.6:ENST00000408981.6:ENST00000429921.5:ENST00000454822.5:ENST00000453724.5:ENST00000359429.11:ENST00000438265.5:ENST00000429907.5:ENST00000438204.6:ENST00000452025.5:ENST00000445268.5:ENST00000441588.5:ENST00000438191.1:ENST00000411934.6:ENST00000435437.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	119	2	2.97991	3.196905	3.4139	3.10641e-4	1.00747e-4	0.0162055	0.00847812
chr12	76829787	76829887	5174524	0	+	0.32	(0.28,0.32]	chr12	490143	9	INTRON	INTRON	ZDHHC17	ENSG00000186908.15	ENST00000426126.7	protein_coding	protein_coding	protein_coding	protein_coding	2	69	2	2.96187	3.196865	3.43186	0.0114995	0.00160646	0.0889104	0.0367961
chr9	137742471	137742570	4224727	0	+	0.343434	(0.32,0.35]	chr9	388235	33	INTRON	INTRON	EHMT1	ENSG00000181090.21	ENST00000462484.5:ENST00000371394.6:ENST00000460843.6:ENST00000629335.2:ENST00000636027.1:ENST00000637161.1:ENST00000637261.1:ENST00000637977.1:ENST00000626066.2:ENST00000638071.1:ENST00000495657.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	30	2	2.23182	3.19684	4.16186	0.068598	0.026079	0.184298	0.133676
chr16	215160	215259	6426045	0	-	0.474747	(0.44,0.476]	chr16	617437	55	INTRON	INTRON	LUC7L	ENSG00000007392.17	ENST00000337351.8:ENST00000426094.5:ENST00000397783.5:ENST00000629543.2:ENST00000490762.5:ENST00000293872.13:ENST00000419516.5:ENST00000397780.5:ENST00000418978.5:ENST00000430864.5:ENST00000443357.5:ENST00000494366.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	136	2	3.07182	3.196815	3.32181	2.46145e-4	4.09275e-5	0.0144887	0.00519615
chr16	89345017	89345116	6542127	0	-	0.575758	(0.57,1]	chr16	634215	13	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000647238.1:ENST00000644045.1:ENST00000643147.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	75	2	3.14112	3.19681	3.2525	1.55446e-4	1.25645e-5	0.0106835	0.00281675
chr14	20326993	20327093	5833095	0	-	0.47	(0.44,0.476]	chr14	553967	2	SS3_PROX	SS3_PROX:INTRON	CCNB1IP1	ENSG00000100814.18	ENST00000353689.8:ENST00000437553.6:ENST00000398160.6:ENST00000358932.9:ENST00000398169.7:ENST00000398163.6:ENST00000556854.5:ENST00000557665.5:ENST00000556563.5:ENST00000553291.5:ENST00000553516.5:ENST00000555348.5:ENST00000557114.5:ENST00000555963.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	46	2	1.49356	3.1967800000000004	4.9	0.0537505	0.00423315	0.180803	0.0572185
chr1	65276609	65276708	135759	0	+	0.353535	(0.35,0.378]	chr1	15346	113	INTRON	INTRON	DNAJC6	ENSG00000116675.16	ENST00000463018.5:ENST00000494710.6:ENST00000263441.11:ENST00000395325.7:ENST00000483402.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	81	2	2.48623	3.196735	3.90724	0.00938784	1.41179e-4	0.0817766	0.0102551
chr12	64619243	64619343	5155085	0	+	0.44	(0.408,0.44]	chr12	488093	77	INTRON	INTRON	RASSF3	ENSG00000153179.13	ENST00000637125.1:ENST00000542104.6:ENST00000283172.8:ENST00000336061.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	38	2	2.05947	3.196735	4.334	0.0333232	0.011982	0.134145	0.0962115
chr5	70069630	70069730	2382614	0	+	0.34	(0.32,0.35]	chr5	229635	3	SS5_PROX	SS5_PROX:INTRON	SMN2	ENSG00000205571.14	ENST00000511812.5:ENST00000626847.2:ENST00000506734.5:ENST00000380742.8:ENST00000380743.9:ENST00000614240.4:ENST00000380741.8:ENST00000628696.2:ENST00000638794.1:ENST00000503678.5:ENST00000511873.6:ENST00000509805.5:ENST00000505346.5:ENST00000514914.1:ENST00000508258.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	104	2	2.38882	3.196725	4.00463	0.00566663	9.86358e-5	0.0653997	0.00835539
chr7	99448473	99448573	3361950	0	+	0.48	(0.476,0.515]	chr7	313991	2	SS5_PROX	SS5_PROX:INTRON	CPSF4	ENSG00000160917.15	ENST00000436336.6:ENST00000292476.10:ENST00000451876.5:ENST00000430038.5:ENST00000441580.5:ENST00000412686.5:ENST00000484112.5:ENST00000452047.1:ENST00000471455.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	139	2	2.95238	3.1967049999999997	3.44103	1.32392e-4	8.64735e-5	0.0104812	0.00783027
chr2	32530224	32530324	732589	0	+	0.51	(0.476,0.515]	chr2	84613	4	SS5_PROX	SS5_PROX:INTRON	BIRC6	ENSG00000115760.15	ENST00000421745.7:ENST00000471232.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	62	2	1.27239	3.196555	5.12072	0.0651036	8.42139e-4	0.179712	0.0263691
chr11	86339224	86339324	4842736	0	+	0.54	(0.515,0.57]	chr11	451825	13	INTRON	INTRON	HIKESHI	ENSG00000149196.17	ENST00000533986.5:ENST00000278483.8:ENST00000531485.5:ENST00000528004.5:ENST00000530208.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	32	2	1.7074	3.1965399999999997	4.68568	0.0779432	0.00270027	0.196685	0.0479115
chr16	333261	333361	6426662	0	-	0.55	(0.515,0.57]	chr16	617500	182	INTRON	INTRON	AXIN1	ENSG00000103126.15	ENST00000262320.8:ENST00000461023.5:ENST00000354866.7:ENST00000481769.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	32	2	1.7074	3.1965399999999997	4.68568	0.0779432	0.00270027	0.196685	0.0479115
chr1	243238411	243238511	668550	0	-	0.39	(0.378,0.408]	chr1	79325	127	INTRON	INTRON	CEP170	ENSG00000143702.16	ENST00000366544.5:ENST00000366543.5:ENST00000366542.6:ENST00000522191.5:ENST00000523424.5:ENST00000522522.5:ENST00000522995.1:ENST00000523581.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	42	2	1.89251	3.196535	4.50056	0.0251428	0.015974	0.133404	0.101453
chr8	61677903	61678002	3958739	0	-	0.414141	(0.408,0.44]	chr8	363165	12	INTRON	INTRON	ASPH	ENSG00000198363.18	ENST00000379454.9:ENST00000541428.5:ENST00000522349.5:ENST00000523927.5:ENST00000445642.6:ENST00000356457.9:ENST00000519234.5:ENST00000518068.5:ENST00000517903.5:ENST00000517847.6:ENST00000522835.5:ENST00000518306.5:ENST00000517856.5:ENST00000517928.1:ENST00000389204.8:ENST00000522603.5:ENST00000379449.10:ENST00000517661.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	58	2	1.49971	3.1964900000000003	4.89327	0.0298505	0.00458906	0.142135	0.0595107
chr8	102284726	102284826	4011427	0	-	0.54	(0.515,0.57]	chr8	367050	2	SS5_PROX	SS5_PROX:INTRON	UBR5	ENSG00000104517.13	ENST00000520539.6:ENST00000220959.8:ENST00000521922.5	protein_coding	protein_coding	protein_coding	protein_coding	3	37	2	1.88259	3.196295	4.51	0.0251849	0.00809449	0.133519	0.0766625
chr12	132798977	132799076	5449911	0	-	0.606061	(0.57,1]	chr12	522063	1	INTRON	INTRON	GOLGA3	ENSG00000090615.16	ENST00000204726.9:ENST00000450791.8:ENST00000693666.1:ENST00000688114.1:ENST00000687190.1:ENST00000690511.1:ENST00000685283.1:ENST00000691696.1:ENST00000691636.1:ENST00000690897.1:ENST00000690465.1:ENST00000456883.7:ENST00000692253.1:ENST00000687502.1:ENST00000688772.1:ENST00000687479.1:ENST00000690709.1:ENST00000545875.4:ENST00000688251.1:ENST00000690573.1:ENST00000685195.1:ENST00000686425.1:ENST00000693437.1:ENST00000692831.1:ENST00000688068.1:ENST00000692951.1:ENST00000689441.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	57	2	2.8972	3.196185	3.49517	6.03609e-4	6.94474e-5	0.0226059	0.00690574
chr19	34380322	34380422	7052644	0	+	0.49	(0.476,0.515]	chr19	703395	1	SS3_PROX	SS3_PROX:INTRON	GPI	ENSG00000105220.17	ENST00000415930.8:ENST00000588991.7:ENST00000356487.11:ENST00000647446.1:ENST00000586425.2:ENST00000643067.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	141	2	2.18612	3.19617	4.20622	7.82083e-4	4.01076e-5	0.0257355	0.00539487
chr17	27501529	27501628	6581218	0	+	0.545455	(0.515,0.57]	chr17	639666	173	INTRON	INTRON	KSR1	ENSG00000141068.15	ENST00000644974.2:ENST00000583370.5:ENST00000398988.7:ENST00000268763.10:ENST00000509603.6:ENST00000582311.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	31	2	2.1885	3.196155	4.20381	0.0202537	0.0189208	0.121364	0.108861
chr7	130037366	130037466	3638177	0	-	0.53	(0.515,0.57]	chr7	338284	4	SS3_PROX	SS3_PROX:INTRON	ZC3HC1	ENSG00000091732.17	ENST00000311873.9:ENST00000358303.9:ENST00000360708.9:ENST00000467642.5:ENST00000648450.1:ENST00000481503.5:ENST00000477578.5:ENST00000471022.5:ENST00000483827.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	31	2	2.1885	3.196155	4.20381	0.0202537	0.0189208	0.121364	0.108861
chr1	21735829	21735929	396383	0	-	0.42	(0.408,0.44]	chr1	47298	31	INTRON	INTRON	USP48	ENSG00000090686.16	ENST00000400301.5:ENST00000308271.14:ENST00000529637.5:ENST00000421625.6:ENST00000374730.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	229	2	2.27287	3.19611	4.11935	7.41953e-4	1.10101e-7	0.0250391	1.47965e-4
chr17	75387389	75387489	6837615	0	-	0.41	(0.408,0.44]	chr17	675716	542	INTRON	INTRON	GRB2	ENSG00000177885.15	ENST00000316615.9:ENST00000316804.10:ENST00000392562.5:ENST00000392564.5:ENST00000392563.5:ENST00000648046.1:ENST00000578961.5:ENST00000582582.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	56	2	3.14706	3.1960800000000003	3.2451	0.00382411	0.00337792	0.0562562	0.0516884
chr2	135745985	135746083	875972	0	+	0.5	(0.476,0.515]	chr2	98051	29	INTRON	INTRON	UBXN4	ENSG00000144224.17	ENST00000415164.5:ENST00000426921.5:ENST00000272638.14:ENST00000416538.5:ENST00000467065.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	89	2	2.41328	3.196065	3.97885	0.00355364	1.30749e-4	0.0547657	0.0103941
chr7	139105828	139105928	3656382	0	-	0.32	(0.28,0.32]	chr7	339450	157	INTRON	INTRON	ZC3HAV1	ENSG00000105939.14	ENST00000242351.10:ENST00000464606.5:ENST00000680309.1:ENST00000471652.1	protein_coding	protein_coding	protein_coding	protein_coding	4	113	2	2.38482	3.19604	4.00726	0.00641776	1.18967e-4	0.0695827	0.00932482
chr6	143182971	143183071	2976409	0	+	0.43	(0.408,0.44]	chr6	279149	174	INTRON	INTRON	AIG1	ENSG00000146416.19	ENST00000367601.8:ENST00000447498.5:ENST00000646199.1:ENST00000357847.9:ENST00000629020.2:ENST00000275235.8:ENST00000494282.6:ENST00000458219.1:ENST00000470265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	140	2	2.88385	3.19602	3.50819	2.08663e-4	5.7683e-5	0.0131276	0.00620725
chr3	5155531	5155630	1353908	0	+	0.383838	(0.378,0.408]	chr3	142361	266	INTRON	INTRON	ARL8B	ENSG00000134108.14	ENST00000429403.5:ENST00000256496.8:ENST00000455168.5:ENST00000444332.1:ENST00000419534.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	35	2	2.17608	3.195855	4.21563	0.0315429	0.0218783	0.13151	0.123836
chr5	32261719	32261819	2597879	0	-	0.4	(0.378,0.408]	chr5	246812	56	INTRON	INTRON	MTMR12	ENSG00000150712.11	ENST00000280285.9:ENST00000382142.8:ENST00000264934.5	protein_coding	protein_coding	protein_coding	protein_coding	2	35	2	2.17608	3.195855	4.21563	0.0315429	0.0218783	0.13151	0.123836
chr9	33013396	33013496	4242899	0	-	0.36	(0.35,0.378]	chr9	390001	119	INTRON	INTRON	APTX	ENSG00000137074.20	ENST00000673360.1:ENST00000436040.7:ENST00000673487.1:ENST00000467331.6:ENST00000482687.6:ENST00000485479.6:ENST00000460940.6:ENST00000673248.1:ENST00000495360.6:ENST00000672281.1:ENST00000468275.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	110	2	2.39484	3.19567	3.9965	0.00186176	1.64039e-4	0.039946	0.0116917
chr14	27605037	27605137	5848902	0	-	0.32	(0.28,0.32]	chr14	556260	2825	INTRON	INTRON	ENSG00000258932	ENSG00000258932.5	ENST00000553392.5:ENST00000554904.5:ENST00000556890.1:ENST00000555797.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	2	39	2	1.96475	3.195525	4.4263	0.0428385	0.0330296	0.162255	0.133816
chr5	71479854	71479954	2383820	0	+	0.3	(0.28,0.32]	chr5	229887	90	INTRON	INTRON	BDP1	ENSG00000145734.20	ENST00000358731.9:ENST00000508917.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	39	2	1.96475	3.195525	4.4263	0.0428385	0.0330296	0.162255	0.133816
chr5	94652771	94652871	2429261	0	+	0.29	(0.28,0.32]	chr5	233409	1	SS3_PROX	SS3_PROX:INTRON	SLF1	ENSG00000133302.13	ENST00000265140.10:ENST00000508130.5:ENST00000466957.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	39	2	1.96475	3.195525	4.4263	0.0428385	0.0330296	0.162255	0.133816
chr8	9032366	9032463	3695861	0	+	0.28866000000000003	(0.28,0.32]	chr8	342942	25	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	ERI1	ENSG00000104626.15	ENST00000519292.5:ENST00000250263.8:ENST00000520332.5:ENST00000518663.1:ENST00000522612.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	39	2	1.96475	3.195525	4.4263	0.0428385	0.0330296	0.162255	0.133816
chr8	55739040	55739139	3954314	0	-	0.434343	(0.408,0.44]	chr8	362650	4	UTR3	UTR3:EXON_MRNA:INTRON	TMEM68	ENSG00000167904.16	ENST00000522470.1:ENST00000617782.4:ENST00000334667.6:ENST00000434581.7:ENST00000519460.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	74	2	3.01942	3.19552	3.37162	0.00208674	7.74413e-4	0.0411801	0.0256083
chr1	28933162	28933262	59142	0	+	0.34	(0.32,0.35]	chr1	7621	180	INTRON	INTRON	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000647918.1:ENST00000646800.1:ENST00000644342.1:ENST00000646189.1:ENST00000482464.6:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000646260.1:ENST00000373798.5:ENST00000644600.1:ENST00000649674.1:ENST00000643173.1:ENST00000343067.9:ENST00000644780.1:ENST00000650265.1:ENST00000648181.1:ENST00000643604.1:ENST00000648891.1:ENST00000373797.2:ENST00000349460.9:ENST00000645184.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	27	2	2.21917	3.19549	4.17181	0.0641245	0.04531	0.199279	0.149888
chr10	70409535	70409635	4447129	0	+	0.34	(0.32,0.35]	chr10	410345	46	INTRON	INTRON	EIF4EBP2	ENSG00000148730.7	ENST00000373218.5	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	2.21917	3.19549	4.17181	0.0641245	0.04531	0.199279	0.149888
chr12	12124364	12124464	5269602	0	-	0.34	(0.32,0.35]	chr12	502281	4	SS5_PROX	SS5_PROX:INTRON	LRP6	ENSG00000070018.9	ENST00000261349.9:ENST00000538239.5:ENST00000540527.5:ENST00000543091.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	27	2	2.21917	3.19549	4.17181	0.0641245	0.04531	0.199279	0.149888
chr14	96839817	96839917	5811283	0	+	0.33	(0.32,0.35]	chr14	551019	16	INTRON	INTRON	VRK1	ENSG00000100749.9	ENST00000553683.2:ENST00000680538.1:ENST00000555351.2:ENST00000681195.1:ENST00000681524.1:ENST00000680084.1:ENST00000679533.1:ENST00000681598.1:ENST00000679727.1:ENST00000679758.1:ENST00000680509.1:ENST00000557222.6:ENST00000679977.1:ENST00000680387.1:ENST00000680335.1:ENST00000680683.1:ENST00000681474.1:ENST00000216639.8:ENST00000681363.1:ENST00000681538.1:ENST00000679736.1:ENST00000681176.1:ENST00000680922.1:ENST00000679903.1:ENST00000557352.2:ENST00000681101.1:ENST00000681419.1:ENST00000680348.1:ENST00000679941.1:ENST00000679452.1:ENST00000680849.1:ENST00000679770.1:ENST00000681493.1:ENST00000681778.1:ENST00000680993.1:ENST00000681355.1:ENST00000681695.1:ENST00000681344.1:ENST00000680007.1:ENST00000679918.1:ENST00000681785.1:ENST00000679816.1:ENST00000680756.1:ENST00000681249.1:ENST00000680526.1:ENST00000679365.1:ENST00000680851.1:ENST00000679506.1:ENST00000679650.1:ENST00000679462.1:ENST00000680724.1:ENST00000680339.1:ENST00000680384.1:ENST00000680222.1:ENST00000681077.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	27	2	2.21917	3.19549	4.17181	0.0641245	0.04531	0.199279	0.149888
chr15	85015526	85015626	6089267	0	+	0.34	(0.32,0.35]	chr15	579504	328	INTRON	INTRON	PDE8A	ENSG00000073417.15	ENST00000310298.8:ENST00000557957.5:ENST00000394553.6:ENST00000339708.9:ENST00000478717.5:ENST00000485596.5:ENST00000559742.5:ENST00000559086.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	27	2	2.21917	3.19549	4.17181	0.0641245	0.04531	0.199279	0.149888
chr16	84723196	84723296	6410135	0	+	0.34	(0.32,0.35]	chr16	615272	63	INTRON	INTRON	USP10	ENSG00000103194.16	ENST00000562743.5:ENST00000540269.6:ENST00000563892.5:ENST00000562092.1:ENST00000569511.5:ENST00000219473.12:ENST00000570191.5:ENST00000563048.5:ENST00000562283.5:ENST00000563386.5:ENST00000569038.5:ENST00000570053.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	27	2	2.21917	3.19549	4.17181	0.0641245	0.04531	0.199279	0.149888
chr17	46092569	46092669	6783859	0	-	0.33	(0.32,0.35]	chr17	669203	35	INTRON	INTRON	KANSL1	ENSG00000120071.15	ENST00000574590.6:ENST00000572904.6:ENST00000432791.7:ENST00000575318.6:ENST00000638275.1:ENST00000262419.10:ENST00000648792.1:ENST00000639531.1:ENST00000639150.1:ENST00000639853.1:ENST00000571698.2:ENST00000639375.1:ENST00000577114.2:ENST00000639279.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	27	2	2.21917	3.19549	4.17181	0.0641245	0.04531	0.199279	0.149888
chr17	46181125	46181225	6784752	0	-	0.34	(0.32,0.35]	chr17	669245	85	INTRON	INTRON	KANSL1	ENSG00000120071.15	ENST00000574590.6:ENST00000572904.6:ENST00000432791.7:ENST00000575318.6:ENST00000638275.1:ENST00000262419.10:ENST00000648792.1:ENST00000639150.1:ENST00000571698.2:ENST00000639375.1:ENST00000638269.1:ENST00000639356.1:ENST00000574655.6:ENST00000639099.1:ENST00000638902.1:ENST00000576739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	27	2	2.21917	3.19549	4.17181	0.0641245	0.04531	0.199279	0.149888
chr18	13046878	13046977	6877142	0	+	0.323232	(0.32,0.35]	chr18	681428	42	INTRON	INTRON	CEP192	ENSG00000101639.19	ENST00000325971.12:ENST00000506447.5:ENST00000589596.5:ENST00000513432.5:ENST00000511820.6:ENST00000510237.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	27	2	2.21917	3.19549	4.17181	0.0641245	0.04531	0.199279	0.149888
chr19	52201264	52201350	7094373	0	+	0.325581	(0.32,0.35]	chr19	711175	3	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	PPP2R1A	ENSG00000105568.18	ENST00000490868.5:ENST00000454220.6:ENST00000322088.11:ENST00000468280.5:ENST00000462990.5:ENST00000495876.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	27	2	2.21917	3.19549	4.17181	0.0641245	0.04531	0.199279	0.149888
chr2	32015846	32015946	1091173	0	-	0.35	(0.32,0.35]	chr2	116926	34	INTRON	INTRON	DPY30	ENSG00000162961.14	ENST00000446765.5:ENST00000452582.5:ENST00000414013.5	protein_coding	processed_transcript	protein_coding	processed_transcript	1	27	2	2.21917	3.19549	4.17181	0.0641245	0.04531	0.199279	0.149888
chr2	39430392	39430492	1104232	0	-	0.34	(0.32,0.35]	chr2	118511	507	INTRON	INTRON	MAP4K3	ENSG00000011566.15	ENST00000263881.8:ENST00000341681.9:ENST00000429397.5:ENST00000437968.1:ENST00000484274.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	27	2	2.21917	3.19549	4.17181	0.0641245	0.04531	0.199279	0.149888
chr3	182946737	182946837	1879591	0	-	0.34	(0.32,0.35]	chr3	187791	1	SS5_PROX	SS5_PROX:INTRON	DCUN1D1	ENSG00000043093.15	ENST00000292782.9:ENST00000632685.1:ENST00000460412.6:ENST00000469954.5:ENST00000492563.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	27	2	2.21917	3.19549	4.17181	0.0641245	0.04531	0.199279	0.149888
chr6	38019558	38019658	2859032	0	+	0.34	(0.32,0.35]	chr6	270237	154	INTRON	INTRON	ZFAND3	ENSG00000156639.12	ENST00000287218.9:ENST00000373391.6:ENST00000474522.5:ENST00000373389.5	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	2.21917	3.19549	4.17181	0.0641245	0.04531	0.199279	0.149888
chr6	104788510	104788610	3171768	0	-	0.33	(0.32,0.35]	chr6	295866	12	INTRON	INTRON	HACE1	ENSG00000085382.12	ENST00000262903.9:ENST00000416605.6:ENST00000369125.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	27	2	2.21917	3.19549	4.17181	0.0641245	0.04531	0.199279	0.149888
chr5	139597863	139597963	2500869	0	+	0.43	(0.408,0.44]	chr5	239026	351	INTRON	INTRON	UBE2D2	ENSG00000131508.16	ENST00000511725.5:ENST00000505007.5:ENST00000398733.8:ENST00000510470.1:ENST00000398734.8:ENST00000505548.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	41	2	1.8749	3.1954700000000003	4.51604	0.0264246	0.0137419	0.133676	0.0949306
chr7	149573603	149573703	3672112	0	-	0.41	(0.408,0.44]	chr7	340834	96	INTRON	INTRON	ZNF767P	ENSG00000133624.14	ENST00000463567.5:ENST00000472212.5:ENST00000684939.1:ENST00000690388.1:ENST00000486492.5:ENST00000481762.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	3	41	2	1.8749	3.1954700000000003	4.51604	0.0264246	0.0137419	0.133676	0.0949306
chr16	29549737	29549832	6471089	0	-	0.494737	(0.476,0.515]	chr16	625241	6	INTRON	INTRON	ENSG00000288632:SMG1P2	ENSG00000288632.1:ENSG00000205534.6	ENST00000675579.1:ENST00000566127.1	lncRNA	lncRNA	lncRNA:transcribed_unprocessed_pseudogene	lncRNA:transcribed_unprocessed_pseudogene	2	36	2	1.86492	3.1954599999999997	4.526	0.0550347	0.00699701	0.165463	0.0754576
chr7	111091136	111091236	3619393	0	-	0.49	(0.476,0.515]	chr7	337093	1272	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	36	2	1.86492	3.1954599999999997	4.526	0.0550347	0.00699701	0.165463	0.0754576
chr2	151430309	151430407	893416	0	+	0.530612	(0.515,0.57]	chr2	98914	10	INTRON	INTRON	RIF1	ENSG00000080345.18	ENST00000453091.6:ENST00000428287.6:ENST00000444746.7:ENST00000243326.9:ENST00000414861.6:ENST00000430328.6	protein_coding	protein_coding	protein_coding	protein_coding	4	76	2	2.69048	3.1953899999999997	3.7003	8.78655e-4	3.73715e-4	0.0269932	0.0179087
chr10	31913551	31913650	4590169	0	-	0.363636	(0.35,0.378]	chr10	423177	26	INTRON	INTRON	ARHGAP12	ENSG00000165322.18	ENST00000344936.7:ENST00000375245.8:ENST00000396144.8:ENST00000375250.9	protein_coding	protein_coding	protein_coding	protein_coding	1	26	2	2.30249	3.1953250000000004	4.08816	0.0519726	0.046021	0.176696	0.149888
chr10	68021758	68021857	4637401	0	-	0.363636	(0.35,0.378]	chr10	426398	72	INTRON	INTRON	HERC4	ENSG00000148634.16	ENST00000277817.10:ENST00000373700.9:ENST00000412272.6:ENST00000395198.7:ENST00000473533.6:ENST00000427635.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	26	2	2.30249	3.1953250000000004	4.08816	0.0519726	0.046021	0.176696	0.149888
chr10	128122580	128122680	4715665	0	-	0.36	(0.35,0.378]	chr10	435173	3	SS5_PROX	SS5_PROX:INTRON	MKI67	ENSG00000148773.14	ENST00000368654.8:ENST00000368653.7:ENST00000478293.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	26	2	2.30249	3.1953250000000004	4.08816	0.0519726	0.046021	0.176696	0.149888
chr12	108539986	108540085	5405542	0	-	0.353535	(0.35,0.378]	chr12	515889	5	INTRON	INTRON	SART3	ENSG00000075856.12	ENST00000546815.6:ENST00000651280.1:ENST00000228284.8:ENST00000546728.5:ENST00000431469.6:ENST00000547528.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	26	2	2.30249	3.1953250000000004	4.08816	0.0519726	0.046021	0.176696	0.149888
chr12	123626674	123626765	5445599	0	-	0.362637	(0.35,0.378]	chr12	521177	3	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	EIF2B1	ENSG00000111361.13	ENST00000424014.7:ENST00000539951.5:ENST00000534960.5:ENST00000537073.1	protein_coding	protein_coding	protein_coding	protein_coding	1	26	2	2.30249	3.1953250000000004	4.08816	0.0519726	0.046021	0.176696	0.149888
chr15	40604323	40604418	6002533	0	+	0.368421	(0.35,0.378]	chr15	570852	10	INTRON	INTRON	KNL1	ENSG00000137812.21	ENST00000346991.9:ENST00000528975.5:ENST00000614337.4:ENST00000399668.7:ENST00000532056.5:ENST00000533001.1:ENST00000534204.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	26	2	2.30249	3.1953250000000004	4.08816	0.0519726	0.046021	0.176696	0.149888
chr17	30142712	30142812	6587649	0	+	0.37	(0.35,0.378]	chr17	640563	146	INTRON	INTRON	NSRP1	ENSG00000126653.18	ENST00000540900.7:ENST00000612959.4:ENST00000247026.10:ENST00000577289.6:ENST00000584154.5:ENST00000394826.8:ENST00000475652.5:ENST00000584317.5:ENST00000583301.5:ENST00000585881.5:ENST00000467446.6:ENST00000580103.6:ENST00000581048.5:ENST00000588614.1:ENST00000589608.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	26	2	2.30249	3.1953250000000004	4.08816	0.0519726	0.046021	0.176696	0.149888
chr8	100700155	100700255	4005352	0	-	0.36	(0.35,0.378]	chr8	366563	135	INTRON	INTRON	PABPC1	ENSG00000070756.17	ENST00000518293.5	protein_coding	protein_coding	protein_coding	protein_coding	1	26	2	2.30249	3.1953250000000004	4.08816	0.0519726	0.046021	0.176696	0.149888
chr4	73106553	73106652	2159277	0	-	0.545455	(0.515,0.57]	chr4	212662	26	INTRON	INTRON	ANKRD17	ENSG00000132466.20	ENST00000358602.9:ENST00000558247.5:ENST00000330838.10:ENST00000509867.6:ENST00000561029.1	protein_coding	protein_coding	protein_coding	protein_coding	2	49	2	2.98677	3.195325	3.40388	0.00632549	0.00142538	0.0722266	0.0340865
chr15	55226609	55226709	6180264	0	-	0.55	(0.515,0.57]	chr15	589118	22	INTRON	INTRON	RAB27A	ENSG00000069974.16	ENST00000336787.6:ENST00000396307.6:ENST00000564609.5:ENST00000569493.5:ENST00000566877.5:ENST00000567380.5:ENST00000565972.5	protein_coding	protein_coding	protein_coding	protein_coding	4	42	2	1.62814	3.19529	4.76244	0.035203	0.00362147	0.150193	0.0533855
chr19	11127210	11127309	7017216	0	+	0.494949	(0.476,0.515]	chr19	697502	35	INTRON	INTRON	LDLR	ENSG00000130164.14	ENST00000557933.5:ENST00000558518.6:ENST00000545707.5:ENST00000535915.5:ENST00000455727.6:ENST00000558013.5:ENST00000252444.9	protein_coding	protein_coding	protein_coding	protein_coding	3	44	2	1.69138	3.1952800000000003	4.69918	0.0481165	0.00400966	0.153019	0.057767
chr1	40198443	40198542	80338	0	+	0.444444	(0.44,0.476]	chr1	10425	23	INTRON	INTRON	RLF	ENSG00000117000.9	ENST00000372771.5	protein_coding	protein_coding	protein_coding	protein_coding	2	36	2	1.77101	3.1952749999999996	4.61954	0.0693975	0.00506805	0.184298	0.0646039
chr19	19497001	19497095	7036273	0	+	0.478723	(0.476,0.515]	chr19	701497	4	INTRON	INTRON	GATAD2A	ENSG00000167491.18	ENST00000360315.7:ENST00000609040.5:ENST00000683918.1:ENST00000404158.5:ENST00000358713.7:ENST00000418032.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	28	2	2.56033	3.195255	3.83018	0.0423385	0.0287634	0.161744	0.127066
chr6	27391331	27391430	2838659	0	+	0.484848	(0.476,0.515]	chr6	266386	3	INTRON	INTRON	ZNF391	ENSG00000124613.9	ENST00000477999.5:ENST00000244576.9:ENST00000461521.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	28	2	2.56033	3.195255	3.83018	0.0423385	0.0287634	0.161744	0.127066
chr21	39253958	39254057	7464929	0	-	0.515152	(0.476,0.515]	chr21	760483	27	INTRON	INTRON	BRWD1	ENSG00000185658.14	ENST00000333229.6:ENST00000342449.8:ENST00000446924.5:ENST00000380800.7:ENST00000430093.5:ENST00000445245.5:ENST00000445668.5:ENST00000412604.1:ENST00000455867.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	41	2	1.86014	3.1951850000000004	4.53023	0.0277606	0.0119748	0.137011	0.0899583
chr16	21867004	21867103	6461913	0	-	0.444444	(0.44,0.476]	chr16	623467	8	INTRON	INTRON	NPIPB4	ENSG00000185864.18	ENST00000543449.1:ENST00000538859.1	protein_coding	processed_transcript	protein_coding	processed_transcript	5	101	2	2.35576	3.1951650000000003	4.03457	0.00208591	1.03446e-4	0.0424672	0.00915599
chr1	55104801	55104895	464743	0	-	0.414894	(0.408,0.44]	chr1	56067	4	INTRON	INTRON	USP24	ENSG00000162402.14	ENST00000294383.7	protein_coding	protein_coding	protein_coding	protein_coding	3	75	2	2.69457	3.195145	3.69572	0.00331036	5.37849e-4	0.0527031	0.0214775
chr4	109474385	109474484	2018978	0	+	0.444444	(0.44,0.476]	chr4	200766	8	INTRON	INTRON	SEC24B	ENSG00000138802.11	ENST00000504968.6:ENST00000399100.6:ENST00000265175.5	protein_coding	protein_coding	protein_coding	protein_coding	3	74	2	2.59632	3.1950950000000002	3.79387	0.00579248	2.19099e-4	0.0662959	0.0129737
chr7	102386709	102386809	3371307	0	+	0.41	(0.408,0.44]	chr7	315446	62	INTRON	INTRON	PRKRIP1	ENSG00000128563.13	ENST00000477886.5:ENST00000469763.5:ENST00000482549.5:ENST00000496391.5:ENST00000482465.5:ENST00000462601.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	102	2	2.32619	3.1949899999999998	4.06379	0.00239266	9.31794e-5	0.0450826	0.00857086
chr5	138760344	138760443	2497372	0	+	0.454545	(0.44,0.476]	chr5	238698	48	INTRON	INTRON	CTNNA1	ENSG00000044115.21	ENST00000517980.5:ENST00000522227.5:ENST00000524127.5:ENST00000523912.5:ENST00000627109.2:ENST00000520339.5:ENST00000521724.5:ENST00000302763.12:ENST00000518910.5:ENST00000521941.1:ENST00000519309.5:ENST00000519113.5:ENST00000520158.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	55	2	3.02751	3.19491	3.36231	0.00715968	0.00161678	0.0723634	0.0369204
chr17	2164562	2164662	6703311	0	-	0.46	(0.44,0.476]	chr17	656271	696	INTRON	INTRON	SMG6	ENSG00000070366.14	ENST00000263073.11:ENST00000354901.8:ENST00000536871.6:ENST00000575454.1:ENST00000570874.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	55	2	3.07862	3.1948600000000003	3.3111	0.0060153	0.0020006	0.0674604	0.0412555
chr7	75453513	75453613	3558602	0	-	0.46	(0.44,0.476]	chr7	331545	109	INTRON	INTRON	POM121C	ENSG00000272391.6	ENST00000615331.5:ENST00000398379.2	protein_coding	protein_coding	protein_coding	protein_coding	7	122	2	2.25507	3.194825	4.13458	0.00113263	6.18626e-5	0.0308498	0.00694613
chr2	108597609	108597708	846484	0	+	0.252525	[0,0.28]	chr2	94686	26	INTRON	INTRON	LIMS1	ENSG00000169756.17	ENST00000695516.1:ENST00000544547.6:ENST00000695517.1:ENST00000695518.1:ENST00000695519.1:ENST00000332345.10:ENST00000695520.1:ENST00000393310.5:ENST00000695521.1	protein_coding	protein_coding	protein_coding	protein_coding	3	106	2	2.78941	3.1948	3.60019	0.00320409	0.00172089	0.0521823	0.0374701
chr22	16800224	16800324	7546402	0	-	0.27	[0,0.28]	chr22	771320	2	SS3_PROX	SS3_PROX:INTRON	XKR3	ENSG00000172967.8	ENST00000331428.5:ENST00000684488.1	protein_coding	protein_coding	protein_coding	protein_coding	3	106	2	2.78941	3.1948	3.60019	0.00320409	0.00172089	0.0521823	0.0374701
chr1	22059786	22059886	42272	0	+	0.5	(0.476,0.515]	chr1	5075	1	SS5_PROX	SS5_PROX:INTRON	ENSG00000289694:CDC42:CDC42-IT1	ENSG00000289694.1:ENSG00000070831.18:ENSG00000230068.2	ENST00000695855.1:ENST00000695856.1:ENST00000344548.8:ENST00000400259.5:ENST00000667384.2:ENST00000411827.2:ENST00000695858.1:ENST00000695857.1:ENST00000315554.14:ENST00000695859.1:ENST00000498236.1:ENST00000656825.1:ENST00000651171.1:ENST00000652582.1:ENST00000695860.1:ENST00000695796.1:ENST00000695797.1:ENST00000662562.2:ENST00000695798.1:ENST00000431803.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:nonsense_mediated_decay:lncRNA	2	56	2	2.7646	3.19462	3.62464	0.0162075	5.079e-4	0.101453	0.0202328
chr1	24759411	24759510	46201	0	+	0.363636	(0.35,0.378]	chr1	5764	134	INTRON	INTRON	CLIC4	ENSG00000169504.15	ENST00000488683.1:ENST00000497755.1:ENST00000489758.1:ENST00000374379.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	60	2	3.17244	3.194605	3.21677	0.00487788	0.00313804	0.0607461	0.0514466
chr17	39415938	39416037	6766788	0	-	0.373737	(0.35,0.378]	chr17	665525	2	INTRON	INTRON	MED1	ENSG00000125686.12	ENST00000394287.7:ENST00000300651.11:ENST00000577831.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	60	2	3.17244	3.194605	3.21677	0.00487788	0.00313804	0.0607461	0.0514466
chr11	68551586	68551686	4818254	0	+	0.52	(0.515,0.57]	chr11	448964	4	SS5_PROX	SS5_PROX:INTRON	PPP6R3	ENSG00000110075.15	ENST00000529907.5:ENST00000534534.5:ENST00000524845.5:ENST00000393800.7:ENST00000265637.8:ENST00000524904.5:ENST00000393801.7:ENST00000265636.9:ENST00000529710.5:ENST00000527403.6	protein_coding	protein_coding	protein_coding	protein_coding	5	102	2	2.67294	3.19457	3.7162	0.00112534	1.22791e-5	0.0306963	0.0026103
chr2	65397018	65397117	1143841	0	-	0.313131	(0.28,0.32]	chr2	122242	194	INTRON	INTRON	SPRED2	ENSG00000198369.10	ENST00000356388.9:ENST00000440972.1	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	2.2609	3.1944850000000002	4.12807	0.0671429	0.0338135	0.183051	0.146709
chr20	50904682	50904779	7355609	0	-	0.28866000000000003	(0.28,0.32]	chr20	750094	8	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	ADNP	ENSG00000101126.18	ENST00000371602.9:ENST00000621696.5:ENST00000673732.1:ENST00000396029.8:ENST00000644386.1:ENST00000396032.8:ENST00000349014.8:ENST00000645081.1:ENST00000642364.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	32	2	2.2609	3.1944850000000002	4.12807	0.0671429	0.0338135	0.183051	0.146709
chr3	48249565	48249664	1420561	0	+	0.313131	(0.28,0.32]	chr3	149305	15	INTRON	INTRON	ZNF589	ENSG00000164048.14	ENST00000427617.6:ENST00000412564.5:ENST00000354698.8:ENST00000440261.6:ENST00000448461.5:ENST00000457782.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	32	2	2.2609	3.1944850000000002	4.12807	0.0671429	0.0338135	0.183051	0.146709
chr7	24601583	24601683	3290998	0	+	0.31	(0.28,0.32]	chr7	305717	40	INTRON	INTRON	PALS2	ENSG00000105926.16	ENST00000432190.5:ENST00000409761.5:ENST00000222644.10:ENST00000396475.6:ENST00000430180.5:ENST00000426450.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	32	2	2.2609	3.1944850000000002	4.12807	0.0671429	0.0338135	0.183051	0.146709
chr7	73519231	73519331	3555070	0	-	0.29	(0.28,0.32]	chr7	330813	80	INTRON	INTRON	BAZ1B	ENSG00000009954.11	ENST00000339594.9:ENST00000404251.1	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	2.2609	3.1944850000000002	4.12807	0.0671429	0.0338135	0.183051	0.146709
chr7	156858878	156858978	3687675	0	-	0.31	(0.28,0.32]	chr7	342096	216	INTRON	INTRON	LMBR1	ENSG00000105983.23	ENST00000353442.10:ENST00000415428.5:ENST00000454132.5:ENST00000434503.5:ENST00000430278.5:ENST00000434278.5:ENST00000444719.5:ENST00000461469.5:ENST00000414218.1:ENST00000434453.1:ENST00000498034.5:ENST00000433968.5:ENST00000485985.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	32	2	2.2609	3.1944850000000002	4.12807	0.0671429	0.0338135	0.183051	0.146709
chr15	67206988	67207085	6210935	0	-	0.494845	(0.476,0.515]	chr15	592775	25	INTRON	INTRON	AAGAB	ENSG00000103591.13	ENST00000261880.10:ENST00000538028.1:ENST00000561452.5:ENST00000542650.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	98	2	3.03027	3.1941699999999997	3.35807	9.53446e-4	1.37324e-4	0.0282335	0.0100829
chr6	28142263	28142363	2839326	0	+	0.36	(0.35,0.378]	chr6	266500	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ZKSCAN8	ENSG00000198315.11	ENST00000330236.7:ENST00000606198.5:ENST00000457389.6:ENST00000536028.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	97	2	2.46611	3.194145	3.92218	0.00297318	2.32637e-4	0.0501309	0.013966
chr15	44431094	44431194	6014386	0	+	0.49	(0.476,0.515]	chr15	572914	26	INTRON	INTRON	CTDSPL2	ENSG00000137770.14	ENST00000558791.5:ENST00000260327.9:ENST00000560834.1:ENST00000558966.5:ENST00000559793.5:ENST00000558968.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	98	2	3.0883	3.19414	3.29998	7.31567e-4	1.88247e-4	0.0248722	0.011951
chr2	28779838	28779938	724934	0	+	0.42	(0.408,0.44]	chr2	83738	4	INTRON	INTRON	PPP1CB	ENSG00000213639.10	ENST00000455580.5:ENST00000358506.6:ENST00000296122.10:ENST00000395366.3:ENST00000418910.1	protein_coding	protein_coding	protein_coding	protein_coding	3	45	2	2.26617	3.19402	4.12187	0.0354689	0.00649402	0.137535	0.0734343
chr17	30841181	30841281	6590518	0	+	0.53	(0.515,0.57]	chr17	640935	4	SS5_PROX	SS5_PROX:INTRON	ATAD5	ENSG00000176208.9	ENST00000321990.5:ENST00000578295.5:ENST00000585133.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:non_stop_decay	2	32	2	1.79136	3.19383	4.5963	0.0638444	0.00370287	0.177811	0.0561162
chr3	128492050	128492149	1496759	0	+	0.525253	(0.515,0.57]	chr3	156310	16	INTRON	INTRON	GATA2-AS1	ENSG00000244300.3	ENST00000464242.1:ENST00000468377.1:ENST00000669945.1	lncRNA	lncRNA	lncRNA	lncRNA	2	32	2	1.79136	3.19383	4.5963	0.0638444	0.00370287	0.177811	0.0561162
chr12	11130062	11130162	5269097	0	-	0.5	(0.476,0.515]	chr12	502256	85	INTRON	INTRON	ENSG00000275778:PRH1	ENSG00000275778.2:ENSG00000231887.8	ENST00000536668.2:ENST00000535024.6:ENST00000541977.5:ENST00000546265.1:ENST00000541175.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	73	2	2.93046	3.193785	3.45711	0.00140905	0.00118985	0.0340865	0.031662
chr20	31558911	31559010	7253435	0	+	0.484848	(0.476,0.515]	chr20	736659	37	INTRON	INTRON	HM13	ENSG00000101294.18	ENST00000335574.10:ENST00000674240.1:ENST00000340852.9:ENST00000398174.9:ENST00000649820.1:ENST00000466766.2:ENST00000650367.1:ENST00000344042.5:ENST00000649374.1:ENST00000469126.5:ENST00000492709.5:ENST00000469097.5:ENST00000487964.5:ENST00000649583.1:ENST00000460389.5:ENST00000494153.5:ENST00000483310.5:ENST00000472128.5:ENST00000474466.5:ENST00000468559.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	73	2	2.93046	3.193785	3.45711	0.00140905	0.00118985	0.0340865	0.031662
chr3	197190026	197190126	1902420	0	-	0.28	[0,0.28]	chr3	190642	60	INTRON	INTRON	DLG1	ENSG00000075711.21	ENST00000667157.1:ENST00000346964.6:ENST00000656428.1:ENST00000663148.1:ENST00000655488.1:ENST00000357674.9:ENST00000671185.1:ENST00000658701.1:ENST00000667104.1:ENST00000661336.1:ENST00000669565.1:ENST00000670455.1:ENST00000656087.1:ENST00000670366.1:ENST00000653583.1:ENST00000661453.1:ENST00000665728.1:ENST00000664564.1:ENST00000660432.1:ENST00000660898.1:ENST00000657381.1:ENST00000659221.1:ENST00000654737.1:ENST00000669332.1:ENST00000659716.1:ENST00000664991.1:ENST00000419354.5:ENST00000661440.1:ENST00000667971.1:ENST00000670935.1:ENST00000668578.1:ENST00000666007.1:ENST00000661229.1:ENST00000661013.1:ENST00000436682.6:ENST00000662727.1:ENST00000422288.6:ENST00000448528.6:ENST00000656944.1:ENST00000392382.6:ENST00000450955.5:ENST00000658155.1:ENST00000669714.1:ENST00000654733.1:ENST00000469073.2:ENST00000419227.5:ENST00000392381.7:ENST00000471733.5:ENST00000419553.6:ENST00000661808.1:ENST00000453607.5:ENST00000456699.6:ENST00000392380.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	42	2	1.84147	3.193785	4.5461	0.0610416	0.0365918	0.193277	0.138959
chr6	163447189	163447289	3032030	0	+	0.22	[0,0.28]	chr6	282563	178	INTRON	INTRON	QKI	ENSG00000112531.17	ENST00000361758.8:ENST00000453779.6:ENST00000275262.11:ENST00000392127.6:ENST00000361752.8:ENST00000361195.6:ENST00000424802.7:ENST00000545607.5:ENST00000544436.5:ENST00000537041.5:ENST00000537124.5:ENST00000545346.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	42	2	1.84147	3.193785	4.5461	0.0610416	0.0365918	0.193277	0.138959
chr1	246192877	246192976	677563	0	-	0.232323	[0,0.28]	chr1	79729	39	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000391836.3:ENST00000453676.5:ENST00000462422.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	78	2	3.04867	3.193605	3.33854	0.0104221	0.00278022	0.085482	0.0488412
chr12	55791671	55791768	5332563	0	-	0.329897	(0.32,0.35]	chr12	509138	7	INTRON	INTRON	SARNP	ENSG00000205323.9	ENST00000546604.5:ENST00000552884.5:ENST00000336133.8:ENST00000552080.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	64	2	2.84812	3.19333	3.53854	0.0147575	9.09596e-4	0.0983813	0.0277043
chr5	171389097	171389197	2546576	0	+	0.45	(0.44,0.476]	chr5	243079	3	SS5_PROX	SS5_PROX:INTRON	NPM1	ENSG00000181163.14	ENST00000517671.5:ENST00000676613.1:ENST00000678186.1:ENST00000678267.1:ENST00000677297.1:ENST00000521672.6:ENST00000679190.1:ENST00000677467.1:ENST00000678280.1:ENST00000676625.1:ENST00000679006.1:ENST00000351986.10:ENST00000676504.1:ENST00000676589.1:ENST00000677357.1:ENST00000679233.1:ENST00000296930.10:ENST00000393820.2:ENST00000521260.2:ENST00000518587.2:ENST00000678774.1:ENST00000521710.2:ENST00000523339.1:ENST00000677600.1:ENST00000677741.1:ENST00000523622.1:ENST00000677325.1:ENST00000677672.1:ENST00000677907.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	100	2	3.0755	3.1933	3.3111	0.0020006	1.9693e-4	0.0412555	0.0128602
chr1	23023620	23023719	43799	0	+	0.363636	(0.35,0.378]	chr1	5252	33	INTRON	INTRON	KDM1A	ENSG00000004487.18	ENST00000692214.1:ENST00000686934.1:ENST00000689853.1:ENST00000465864.2:ENST00000691256.1:ENST00000688122.1:ENST00000692056.1:ENST00000692853.1:ENST00000689366.1:ENST00000686270.1:ENST00000685102.1:ENST00000690627.1:ENST00000686771.1:ENST00000692209.1:ENST00000686339.1:ENST00000691813.1:ENST00000693156.1:ENST00000688235.1:ENST00000692975.1:ENST00000687202.1:ENST00000691682.1:ENST00000691404.1:ENST00000691694.1:ENST00000688680.1:ENST00000356634.7:ENST00000400181.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	54	2	1.34146	3.19329	5.04512	0.0634598	0.00393262	0.19806000000000001	0.0548259
chr5	157810991	157811090	2758167	0	-	0.262626	[0,0.28]	chr5	260279	8	INTRON	INTRON	CLINT1	ENSG00000113282.14	ENST00000523094.5:ENST00000411809.7:ENST00000530742.5:ENST00000523908.5	protein_coding	protein_coding	protein_coding	protein_coding	3	53	2	1.84046	3.19328	4.5461	0.0365918	0.0335889	0.146709	0.138959
chr10	24650893	24650993	4581214	0	-	0.46	(0.44,0.476]	chr10	422181	154	INTRON	INTRON	ARHGAP21	ENSG00000107863.20	ENST00000612832.4:ENST00000396432.7:ENST00000680286.1:ENST00000376410.7:ENST00000446003.5:ENST00000476499.1:ENST00000416305.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	120	2	3.01557	3.193205	3.37084	2.68647e-4	1.26042e-4	0.0150333	0.00959902
chr17	6904401	6904501	6717247	0	-	0.46	(0.44,0.476]	chr17	658643	227	INTRON	INTRON	ALOX12-AS1	ENSG00000215067.11	ENST00000653385.1:ENST00000659418.1:ENST00000572385.5:ENST00000570562.5:ENST00000575889.5	lncRNA	lncRNA	lncRNA	lncRNA	2	55	2	2.97451	3.193135	3.41176	0.00853825	0.00130987	0.0780043	0.0333932
chr1	214617191	214617289	313678	0	+	0.469388	(0.44,0.476]	chr1	36082	18	INTRON	INTRON	CENPF	ENSG00000117724.14	ENST00000366955.8	protein_coding	protein_coding	protein_coding	protein_coding	2	55	2	3.12799	3.193	3.25801	0.0050635	0.00248185	0.0621733	0.0460771
chr1	1824106	1824205	362165	0	-	0.373737	(0.35,0.378]	chr1	42289	59	INTRON	INTRON	GNB1	ENSG00000078369.18	ENST00000610897.4:ENST00000615252.4:ENST00000378609.9:ENST00000439272.6:ENST00000434686.6:ENST00000437146.1	protein_coding	protein_coding	protein_coding	protein_coding	2	35	2	1.90405	3.192945	4.48184	0.0482651	0.0191702	0.171852	0.108861
chr14	101839898	101839998	5819294	0	+	0.36	(0.35,0.378]	chr14	551873	33	INTRON	INTRON	PPP2R5C	ENSG00000078304.20	ENST00000694906.1:ENST00000422945.6:ENST00000328724.9:ENST00000350249.7:ENST00000557621.5:ENST00000556307.5:ENST00000553730.5:ENST00000334743.9:ENST00000445439.7:ENST00000557095.5:ENST00000556493.1:ENST00000556373.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	35	2	1.90405	3.192945	4.48184	0.0482651	0.0191702	0.171852	0.108861
chr4	119426046	119426145	2230415	0	-	0.373737	(0.35,0.378]	chr4	218488	31	INTRON	INTRON	GTF2IP12	ENSG00000283050.3	ENST00000651444.1:ENST00000634317.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	2	35	2	1.90405	3.192945	4.48184	0.0482651	0.0191702	0.171852	0.108861
chr8	99149575	99149672	3812638	0	+	0.360825	(0.35,0.378]	chr8	353146	12	INTRON	INTRON	VPS13B	ENSG00000132549.20	ENST00000496144.5:ENST00000683334.1:ENST00000682853.1:ENST00000357162.7:ENST00000358544.7:ENST00000683619.1:ENST00000683869.1:ENST00000682153.1:ENST00000682358.1:ENST00000682145.1:ENST00000355155.6:ENST00000682234.1:ENST00000683486.1:ENST00000684308.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	35	2	1.90405	3.192945	4.48184	0.0482651	0.0191702	0.171852	0.108861
chr14	37091486	37091586	5877202	0	-	0.37	(0.35,0.378]	chr14	558013	2161	INTRON	INTRON	SLC25A21	ENSG00000183032.12	ENST00000331299.6:ENST00000555449.5:ENST00000557611.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	61	2	3.05136	3.1926949999999996	3.33403	0.00578894	0.00272701	0.0684334	0.0467523
chr6	131674827	131674910	2960567	0	+	0.385542	(0.378,0.408]	chr6	278311	4	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ENPP3	ENSG00000154269.15	ENST00000427707.5:ENST00000414305.5:ENST00000357639.8:ENST00000358229.6:ENST00000494023.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	57	2	3.05502	3.19264	3.33026	0.00689519	0.00189824	0.0717484	0.0402736
chr10	32921794	32921886	4592330	0	-	0.347826	(0.32,0.35]	chr10	423452	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ITGB1	ENSG00000150093.20	ENST00000609742.3:ENST00000678989.1:ENST00000677363.1:ENST00000302278.8:ENST00000396033.6:ENST00000423113.5:ENST00000417122.7:ENST00000676895.1:ENST00000678120.1:ENST00000676623.1:ENST00000678952.1:ENST00000677999.1:ENST00000679187.1:ENST00000678479.1:ENST00000676964.1:ENST00000488494.6:ENST00000488427.2:ENST00000678591.1:ENST00000678943.1:ENST00000437302.6:ENST00000678701.1:ENST00000678766.1:ENST00000676659.1:ENST00000677310.1:ENST00000474568.6:ENST00000676460.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	37	2	2.01768	3.192615	4.36755	0.0361337	0.0300552	0.152563	0.129138
chr11	2991392	2991492	4891992	0	-	0.33	(0.32,0.35]	chr11	458382	4	SS3_PROX	SS3_PROX:SS5_PROX:INTRON	NAP1L4	ENSG00000205531.13	ENST00000620138.4:ENST00000380542.9:ENST00000526115.5:ENST00000532325.6:ENST00000448187.5:ENST00000399614.6:ENST00000430811.5:ENST00000529361.5:ENST00000528968.5:ENST00000526842.5:ENST00000531291.5:ENST00000534372.1	protein_coding	protein_coding	protein_coding	protein_coding	2	37	2	2.01768	3.192615	4.36755	0.0361337	0.0300552	0.152563	0.129138
chr12	76079635	76079734	5370175	0	-	0.343434	(0.32,0.35]	chr12	512329	50	INTRON	INTRON	NAP1L1	ENSG00000187109.15	ENST00000618691.5:ENST00000393263.7:ENST00000431879.7:ENST00000547773.5:ENST00000544816.5:ENST00000542344.5:ENST00000535020.6:ENST00000549596.5:ENST00000552342.5:ENST00000548044.5:ENST00000550934.5:ENST00000551992.5:ENST00000548273.5:ENST00000551600.5:ENST00000547704.5:ENST00000549988.5:ENST00000547479.5:ENST00000549479.1:ENST00000551500.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	37	2	2.01768	3.192615	4.36755	0.0361337	0.0300552	0.152563	0.129138
chr2	101299165	101299265	1199454	0	-	0.33	(0.32,0.35]	chr2	128179	36	INTRON	INTRON	RNF149	ENSG00000163162.9	ENST00000424632.5:ENST00000295317.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	37	2	2.01768	3.192615	4.36755	0.0361337	0.0300552	0.152563	0.129138
chr2	182956527	182956593	1285188	0	-	0.348485	(0.32,0.35]	chr2	135328	2	CDS	CDS:EXON_MRNA	NCKAP1	ENSG00000061676.15	ENST00000361354.9:ENST00000360982.2:ENST00000493359.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	37	2	2.01768	3.192615	4.36755	0.0361337	0.0300552	0.152563	0.129138
chr4	126734524	126734624	2238056	0	-	0.33	(0.32,0.35]	chr4	219029	359	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	2	37	2	2.01768	3.192615	4.36755	0.0361337	0.0300552	0.152563	0.129138
chr5	141548380	141548480	2739451	0	-	0.33	(0.32,0.35]	chr5	258065	136	INTRON	INTRON	DIAPH1	ENSG00000131504.18	ENST00000647433.1:ENST00000389054.8:ENST00000518047.5:ENST00000491754.5:ENST00000518484.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	37	2	2.01768	3.192615	4.36755	0.0361337	0.0300552	0.152563	0.129138
chr1	96787248	96787347	168607	0	+	0.525253	(0.515,0.57]	chr1	18249	16	INTRON	INTRON	PTBP2	ENSG00000117569.19	ENST00000482253.5:ENST00000675735.1:ENST00000609116.5:ENST00000674951.1:ENST00000675080.1:ENST00000426398.3:ENST00000370197.5:ENST00000370198.5:ENST00000476419.5:ENST00000676292.1:ENST00000676096.1:ENST00000675365.1:ENST00000674579.1:ENST00000675401.1:ENST00000459735.5:ENST00000476783.5:ENST00000492905.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	116	2	2.72308	3.192565	3.66205	2.69455e-4	2.55594e-5	0.0145437	0.0041665
chr6	167019029	167019128	3033567	0	+	0.555556	(0.515,0.57]	chr6	282656	51	INTRON	INTRON	CEP43	ENSG00000213066.13	ENST00000622353.4:ENST00000366847.9:ENST00000349556.4	protein_coding	protein_coding	protein_coding	protein_coding	6	116	2	2.72308	3.192565	3.66205	2.69455e-4	2.55594e-5	0.0145437	0.0041665
chr11	33134112	33134212	4940699	0	-	0.27	[0,0.28]	chr11	462854	253	INTRON	INTRON	CSTF3	ENSG00000176102.13	ENST00000323959.9:ENST00000524827.6	protein_coding	protein_coding	protein_coding	protein_coding	2	78	2	2.9385	3.192305	3.44611	0.0142776	0.00185186	0.0963703	0.039946
chr10	72729957	72730057	4450471	0	+	0.46	(0.44,0.476]	chr10	410752	137	INTRON	INTRON	MCU	ENSG00000156026.15	ENST00000373053.8:ENST00000357157.10:ENST00000604679.5:ENST00000604372.5:ENST00000603649.5:ENST00000605597.5:ENST00000536019.5:ENST00000604152.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	112	2	2.45747	3.1922949999999997	3.92712	6.55527e-4	1.7642e-4	0.0232396	0.01216
chr11	9254086	9254186	4908961	0	-	0.44	(0.408,0.44]	chr11	460115	87	INTRON	INTRON	DENND5A	ENSG00000184014.9	ENST00000328194.8:ENST00000681203.1:ENST00000530780.2:ENST00000679999.1:ENST00000680470.1:ENST00000680554.1:ENST00000681425.1:ENST00000679568.1:ENST00000679446.1:ENST00000680294.1:ENST00000680742.1:ENST00000680885.1:ENST00000530044.5:ENST00000526707.5:ENST00000532696.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	40	2	1.6306	3.1922900000000003	4.75398	0.0544158	0.00703931	0.182272	0.0718189
chr7	66703474	66703574	3325102	0	+	0.42	(0.408,0.44]	chr7	309221	179	INTRON	INTRON	RABGEF1	ENSG00000154710.18	ENST00000607882.5	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	3	40	2	1.6306	3.1922900000000003	4.75398	0.0544158	0.00703931	0.182272	0.0718189
chr1	65052465	65052564	475414	0	-	0.545455	(0.515,0.57]	chr1	57241	75	INTRON	INTRON	JAK1	ENSG00000162434.13	ENST00000672434.1:ENST00000671954.1:ENST00000673502.1:ENST00000672751.1:ENST00000672099.1	protein_coding	protein_coding	protein_coding	protein_coding	6	97	2	2.12085	3.192205	4.26356	0.00319489	1.84244e-5	0.0520636	0.00349761
chr10	31838508	31838606	4589411	0	-	0.510204	(0.476,0.515]	chr10	423129	64	INTRON	INTRON	ARHGAP12	ENSG00000165322.18	ENST00000344936.7:ENST00000375245.8:ENST00000396144.8:ENST00000375250.9:ENST00000311380.8:ENST00000497103.1:ENST00000454919.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	40	2	1.61586	3.1920650000000004	4.76827	0.0567093	0.00600704	0.185107	0.0674604
chr16	81004133	81004233	6530670	0	-	0.51	(0.476,0.515]	chr16	632677	24	INTRON	INTRON	CMC2	ENSG00000103121.9	ENST00000219400.8:ENST00000486645.5:ENST00000570195.5:ENST00000569187.5:ENST00000570086.5:ENST00000565650.5:ENST00000567593.5:ENST00000568228.5:ENST00000565914.5:ENST00000565108.5:ENST00000565925.5:ENST00000564174.5:ENST00000565613.5:ENST00000562713.3:ENST00000562828.5:ENST00000630396.1:ENST00000565514.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	40	2	1.61586	3.1920650000000004	4.76827	0.0567093	0.00600704	0.185107	0.0674604
chr5	134775039	134775135	2490542	0	+	0.510417	(0.476,0.515]	chr5	237899	8	INTRON	INTRON	DDX46	ENSG00000145833.16	ENST00000628477.2:ENST00000452510.7:ENST00000507392.5:ENST00000354283.8:ENST00000509255.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	40	2	1.61586	3.1920650000000004	4.76827	0.0567093	0.00600704	0.185107	0.0674604
chr5	177051528	177051620	2553226	0	+	0.51087	(0.476,0.515]	chr5	243796	2	INTRON	INTRON	ZNF346	ENSG00000113761.12	ENST00000512315.5:ENST00000358149.8:ENST00000506693.5:ENST00000503425.5:ENST00000508155.5:ENST00000511834.5:ENST00000503039.1:ENST00000513587.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	40	2	1.61586	3.1920650000000004	4.76827	0.0567093	0.00600704	0.185107	0.0674604
chr8	47832621	47832718	3944416	0	-	0.402062	(0.378,0.408]	chr8	361659	3	INTRON	INTRON	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7	protein_coding	protein_coding	protein_coding	protein_coding	3	78	2	2.35103	3.191985	4.03294	0.014158	6.52685e-5	0.0959618	0.00669119
chr22	50223274	50223370	7603571	0	-	0.604167	(0.57,1]	chr22	778785	4	EXON_LNCRNA	EXON_LNCRNA:INTRON	TUBGCP6	ENSG00000128159.12	ENST00000498611.5:ENST00000439308.6:ENST00000248846.10:ENST00000491449.5:ENST00000489511.5:ENST00000473946.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	32	2	1.94024	3.1919500000000003	4.44366	0.0116325	0.00210922	0.0889284	0.0425419
chr12	111431564	111431664	5227844	0	+	0.49	(0.476,0.515]	chr12	495494	123	INTRON	INTRON	SH2B3	ENSG00000111252.11	ENST00000341259.7:ENST00000550925.2	protein_coding	protein_coding	protein_coding	protein_coding	4	98	2	2.9698	3.19185	3.4139	0.00124841	1.00747e-4	0.0323336	0.00847812
chr21	36411262	36411362	7404646	0	+	0.5	(0.476,0.515]	chr21	754475	4	SS3_PROX	SS3_PROX:INTRON	CHAF1B	ENSG00000159259.8	ENST00000314103.6:ENST00000481458.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	38	2	2.16377	3.191705	4.21964	0.0243026	0.0167715	0.12011	0.110511
chr7	66708968	66709068	3325157	0	+	0.37	(0.35,0.378]	chr7	309221	234	INTRON	INTRON	RABGEF1	ENSG00000154710.18	ENST00000607882.5	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	4	96	2	2.80389	3.191665	3.57944	0.0010429	6.14024e-4	0.0293983	0.0223951
chr11	34095620	34095719	4768107	0	+	0.444444	(0.44,0.476]	chr11	441022	32	INTRON	INTRON	CAPRIN1	ENSG00000135387.21	ENST00000341394.9:ENST00000528856.5:ENST00000389645.7:ENST00000532820.5:ENST00000530820.5:ENST00000529307.1:ENST00000533657.5:ENST00000528948.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	34	2	2.14573	3.1916399999999996	4.23755	0.0263357	0.0238593	0.129075	0.122221
chr11	76450962	76451060	4835557	0	+	0.469388	(0.44,0.476]	chr11	451038	36	INTRON	INTRON	EMSY	ENSG00000158636.17	ENST00000427574.6:ENST00000695367.1:ENST00000533988.5:ENST00000334736.7:ENST00000524490.5:ENST00000525959.5:ENST00000533972.5:ENST00000528826.1:ENST00000525038.5:ENST00000524767.5:ENST00000525919.5:ENST00000533248.5:ENST00000529032.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	34	2	2.14573	3.1916399999999996	4.23755	0.0263357	0.0238593	0.129075	0.122221
chr1	77986778	77986878	148643	0	+	0.39	(0.378,0.408]	chr1	16574	51	INTRON	INTRON	DNAJB4	ENSG00000162616.9	ENST00000487931.1:ENST00000477671.2:ENST00000484662.1:ENST00000426517.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	34	2	1.97143	3.19156	4.41169	0.0398704	0.0199606	0.161534	0.109608
chr13	95140296	95140396	5638243	0	-	0.4	(0.378,0.408]	chr13	537056	239	INTRON	INTRON	ABCC4	ENSG00000125257.16	ENST00000645237.2:ENST00000643051.1:ENST00000643842.1:ENST00000646439.1:ENST00000644880.1:ENST00000643816.1:ENST00000536256.3:ENST00000643556.1:ENST00000629385.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	34	2	1.97143	3.19156	4.41169	0.0398704	0.0199606	0.161534	0.109608
chr3	33589131	33589231	1652687	0	-	0.38	(0.378,0.408]	chr3	169550	4	SS3_PROX	SS3_PROX:INTRON	CLASP2	ENSG00000163539.18	ENST00000399362.8:ENST00000682230.1:ENST00000468888.6:ENST00000359576.9:ENST00000650653.1:ENST00000480013.6:ENST00000461133.8:ENST00000635664.1	protein_coding	protein_coding	protein_coding	protein_coding	2	34	2	1.97143	3.19156	4.41169	0.0398704	0.0199606	0.161534	0.109608
chr4	39966932	39967032	2132095	0	-	0.4	(0.378,0.408]	chr4	210242	384	INTRON	INTRON	PDS5A	ENSG00000121892.15	ENST00000303538.13:ENST00000503396.5	protein_coding	protein_coding	protein_coding	protein_coding	2	34	2	1.97143	3.19156	4.41169	0.0398704	0.0199606	0.161534	0.109608
chr6	24665802	24665894	3070563	0	-	0.391304	(0.378,0.408]	chr6	285331	3	SS5_PROX	SS5_PROX:INTRON	TDP2	ENSG00000111802.14	ENST00000378198.9:ENST00000341060.3:ENST00000478507.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	34	2	1.97143	3.19156	4.41169	0.0398704	0.0199606	0.161534	0.109608
chr4	2599821	2599921	1913150	0	+	0.47	(0.44,0.476]	chr4	191983	31	INTRON	INTRON	RNF4:FAM193A	ENSG00000063978.16:ENSG00000125386.16	ENST00000508235.1:ENST00000637812.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	90	2	2.98981	3.191515	3.39322	0.00187283	2.07309e-4	0.0390476	0.0125495
chr1	1481336	1481436	1665	0	+	0.44	(0.408,0.44]	chr1	384	4	SS5_PROX	SS5_PROX:INTRON	ATAD3B	ENSG00000160072.20	ENST00000673477.1:ENST00000308647.8:ENST00000472194.6:ENST00000378736.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	27	2	2.27698	3.19146	4.10594	0.0583528	0.0219367	0.167723	0.123836
chr10	48429109	48429207	4432227	0	+	0.418367	(0.408,0.44]	chr10	408626	16	INTRON	INTRON	MAPK8	ENSG00000107643.17	ENST00000395611.7:ENST00000374189.6:ENST00000374179.8:ENST00000360332.7:ENST00000374182.7:ENST00000374176.8:ENST00000469879.6:ENST00000469110.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	27	2	2.27698	3.19146	4.10594	0.0583528	0.0219367	0.167723	0.123836
chr10	50538403	50538502	4619834	0	-	0.424242	(0.408,0.44]	chr10	425452	181	INTRON	INTRON	SGMS1	ENSG00000198964.14	ENST00000429490.5:ENST00000361781.7:ENST00000619438.4:ENST00000609445.5:ENST00000608287.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	27	2	2.27698	3.19146	4.10594	0.0583528	0.0219367	0.167723	0.123836
chr12	54326082	54326182	5143706	0	+	0.41	(0.408,0.44]	chr12	485587	4	SS5_PROX	SS5_PROX:INTRON	COPZ1	ENSG00000111481.10	ENST00000552848.5:ENST00000548076.5:ENST00000553009.5:ENST00000549043.5:ENST00000262061.7:ENST00000552218.5:ENST00000551962.5:ENST00000550171.5:ENST00000455864.6:ENST00000552362.5:ENST00000553231.5:ENST00000550027.5:ENST00000551412.5:ENST00000549116.5:ENST00000551779.5:ENST00000548281.5:ENST00000548753.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	27	2	2.27698	3.19146	4.10594	0.0583528	0.0219367	0.167723	0.123836
chr16	28868705	28868805	6334727	0	+	0.43	(0.408,0.44]	chr16	606612	3	SS3_PROX	SS3_PROX:INTRON	SH2B1	ENSG00000178188.15	ENST00000567536.5:ENST00000322610.12:ENST00000337120.9:ENST00000545570.5:ENST00000618521.4:ENST00000359285.9:ENST00000538342.5:ENST00000684370.1:ENST00000563674.1:ENST00000395532.8:ENST00000566176.5:ENST00000561629.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	27	2	2.27698	3.19146	4.10594	0.0583528	0.0219367	0.167723	0.123836
chr3	69831303	69831403	1449297	0	+	0.44	(0.408,0.44]	chr3	152789	319	INTRON	INTRON	MITF	ENSG00000187098.18	ENST00000687384.1:ENST00000693031.1:ENST00000352241.9:ENST00000642352.1:ENST00000495741.1:ENST00000429090.5:ENST00000433517.5:ENST00000472437.5:ENST00000448226.9:ENST00000689390.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	27	2	2.27698	3.19146	4.10594	0.0583528	0.0219367	0.167723	0.123836
chr3	128096799	128096899	1812951	0	-	0.42	(0.408,0.44]	chr3	182154	1	SS5_PROX	SS5_PROX:INTRON	RUVBL1	ENSG00000175792.12	ENST00000585057.5:ENST00000472125.5:ENST00000464873.5:ENST00000322623.10:ENST00000478892.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	27	2	2.27698	3.19146	4.10594	0.0583528	0.0219367	0.167723	0.123836
chr7	103954056	103954156	3599257	0	-	0.42	(0.408,0.44]	chr7	335929	365	INTRON	INTRON	RELN	ENSG00000189056.15	ENST00000343529.9:ENST00000428762.6:ENST00000681034.1:ENST00000424685.3:ENST00000679867.1:ENST00000473457.2:ENST00000680712.1:ENST00000681931.1:ENST00000681401.1:ENST00000679689.1:ENST00000681182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	27	2	2.27698	3.19146	4.10594	0.0583528	0.0219367	0.167723	0.123836
chr8	9688587	9688687	3700840	0	+	0.42	(0.408,0.44]	chr8	343221	74	INTRON	INTRON	TNKS	ENSG00000173273.16	ENST00000310430.11:ENST00000520408.5:ENST00000518281.5:ENST00000518027.5:ENST00000519392.5:ENST00000517989.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	27	2	2.27698	3.19146	4.10594	0.0583528	0.0219367	0.167723	0.123836
chr2	151428283	151428383	893395	0	+	0.23	[0,0.28]	chr2	98909	1	SS3_PROX	SS3_PROX:INTRON	RIF1	ENSG00000080345.18	ENST00000453091.6:ENST00000428287.6:ENST00000444746.7:ENST00000243326.9:ENST00000414861.6:ENST00000430328.6	protein_coding	protein_coding	protein_coding	protein_coding	3	51	2	1.62313	3.191385	4.75964	0.0605286	0.0232081	0.191883	0.118148
chr13	28273166	28273265	5462191	0	+	0.30303	(0.28,0.32]	chr13	523313	7	INTRON	INTRON	PAN3	ENSG00000152520.14	ENST00000380958.8:ENST00000399613.1	protein_coding	protein_coding	protein_coding	protein_coding	2	41	2	2.24061	3.1913750000000003	4.14214	0.0579756	0.0194267	0.167723	0.119831
chr15	80106346	80106446	6071506	0	+	0.32	(0.28,0.32]	chr15	578328	74	INTRON	INTRON	ZFAND6	ENSG00000086666.19	ENST00000613266.4:ENST00000561060.5:ENST00000559157.5:ENST00000261749.11:ENST00000561012.5:ENST00000564367.5:ENST00000558494.5:ENST00000618205.4:ENST00000560470.5:ENST00000560228.5:ENST00000559835.5:ENST00000559775.5:ENST00000558688.5:ENST00000560976.5:ENST00000560392.5:ENST00000558390.5:ENST00000558272.5:ENST00000557793.1:ENST00000616533.4:ENST00000558087.5:ENST00000558997.5:ENST00000558724.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	41	2	2.24061	3.1913750000000003	4.14214	0.0579756	0.0194267	0.167723	0.119831
chr3	23846784	23846884	1388138	0	+	0.29	(0.28,0.32]	chr3	145385	349	INTRON	INTRON	UBE2E1	ENSG00000170142.12	ENST00000306627.8:ENST00000346855.7:ENST00000495141.5:ENST00000442670.5:ENST00000424381.5:ENST00000467766.5:ENST00000475680.5:ENST00000452012.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	41	2	2.24061	3.1913750000000003	4.14214	0.0579756	0.0194267	0.167723	0.119831
chr5	131752378	131752478	2720298	0	-	0.29	(0.28,0.32]	chr5	255730	73	INTRON	INTRON	FNIP1	ENSG00000217128.13	ENST00000510461.6:ENST00000307954.12:ENST00000307968.11:ENST00000511848.1	protein_coding	protein_coding	protein_coding	protein_coding	2	41	2	2.24061	3.1913750000000003	4.14214	0.0579756	0.0194267	0.167723	0.119831
chr17	82094587	82094687	6851249	0	-	0.53	(0.515,0.57]	chr17	678892	4	SS3_PROX	SS3_PROX:INTRON	FASN	ENSG00000169710.9	ENST00000306749.4:ENST00000634990.1:ENST00000635197.1:ENST00000637525.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	183	2	2.72251	3.1913600000000004	3.66021	5.07339e-5	2.16199e-6	0.00617596	9.16812e-4
chr10	74343540	74343640	4457696	0	+	0.38	(0.378,0.408]	chr10	411566	39	INTRON	INTRON	ADK	ENSG00000156110.15	ENST00000672429.1:ENST00000539909.6:ENST00000286621.7:ENST00000673352.1:ENST00000673310.1:ENST00000672920.1:ENST00000672394.1:ENST00000372734.5:ENST00000673027.1:ENST00000541550.6:ENST00000672604.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	76	2	2.94613	3.19129	3.43645	0.00171162	0.00112461	0.037419	0.0308177
chr7	6375070	6375170	3273025	0	+	0.42	(0.408,0.44]	chr7	304304	3	SS5_PROX	SS5_PROX:INTRON	RAC1	ENSG00000136238.19	ENST00000348035.9:ENST00000356142.4:ENST00000696666.1:ENST00000488373.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	53	2	1.62843	3.191205	4.75398	0.025242	0.00703931	0.133676	0.0718189
chr8	31065563	31065659	3728255	0	+	0.3125	(0.28,0.32]	chr8	346546	1	INTRON	INTRON	WRN	ENSG00000165392.11	ENST00000650667.1:ENST00000298139.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	125	2	2.99206	3.1910749999999997	3.39009	0.0017801	1.74666e-4	0.0379201	0.0114806
chr10	96861514	96861614	4503258	0	+	0.46	(0.44,0.476]	chr10	414536	27	INTRON	INTRON	LCOR	ENSG00000196233.14	ENST00000676067.1:ENST00000676257.1:ENST00000676187.1:ENST00000675151.1:ENST00000675687.1:ENST00000675251.1:ENST00000676123.1:ENST00000371103.8:ENST00000675471.1:ENST00000421806.4:ENST00000675902.1:ENST00000540664.6:ENST00000676414.1:ENST00000675537.1:ENST00000675117.1:ENST00000675125.1:ENST00000356016.7:ENST00000371097.8:ENST00000676381.1:ENST00000674796.1:ENST00000674725.1:ENST00000675971.1:ENST00000676373.1:ENST00000676314.1:ENST00000675915.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	74	2	2.51554	3.19107	3.8666	0.00777207	1.50865e-4	0.0757731	0.0106137
chr7	72906777	72906877	3330066	0	+	0.47	(0.44,0.476]	chr7	309565	153	INTRON	INTRON	POM121	ENSG00000196313.13	ENST00000627934.3:ENST00000395270.5	protein_coding	protein_coding	protein_coding	protein_coding	3	74	2	2.51554	3.19107	3.8666	0.00777207	1.50865e-4	0.0757731	0.0106137
chr7	7215951	7216051	3274927	0	+	0.4	(0.378,0.408]	chr7	304579	55	INTRON	INTRON	C1GALT1	ENSG00000106392.11	ENST00000429911.5:ENST00000436587.7:ENST00000476068.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	57	2	2.95459	3.191045	3.4275	0.00957623	0.00126053	0.0820838	0.03295
chr2	131124755	131124854	864593	0	+	0.424242	(0.408,0.44]	chr2	97130	34	INTRON	INTRON	PLEKHB2	ENSG00000115762.17	ENST00000403716.5:ENST00000439822.6:ENST00000409158.5:ENST00000234115.10:ENST00000628582.2:ENST00000482225.1:ENST00000693505.1:ENST00000438882.6:ENST00000404460.5:ENST00000409612.5:ENST00000409279.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	120	2	3.06698	3.19102	3.31506	8.51999e-4	3.05782e-5	0.0267428	0.00441979
chr2	24505188	24505288	709396	0	+	0.52	(0.515,0.57]	chr2	82200	126	INTRON	INTRON	NCOA1	ENSG00000084676.16	ENST00000348332.8:ENST00000496333.5:ENST00000406961.5:ENST00000469850.5:ENST00000405141.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	55	2	1.27738	3.19093	5.10448	0.0499863	0.0010345	0.17488	0.029231300000000002
chr17	60384784	60384884	6805802	0	-	0.5	(0.476,0.515]	chr17	672366	388	INTRON	INTRON	USP32	ENSG00000170832.13	ENST00000300896.9:ENST00000590133.5:ENST00000589335.5:ENST00000393003.7:ENST00000588898.1:ENST00000589761.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	100	2	2.51682	3.19092	3.86502	9.59562e-4	2.2858e-4	0.0284801	0.0138641
chr1	1803521	1803620	361952	0	-	0.525253	(0.515,0.57]	chr1	42263	95	INTRON	INTRON	GNB1	ENSG00000078369.18	ENST00000610897.4:ENST00000615252.4:ENST00000378609.9:ENST00000471354.1:ENST00000439272.6:ENST00000434686.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	24	2	2.34087	3.190865	4.04086	0.0469761	0.0197045	0.151917	0.120063
chr1	25817450	25817547	49113	0	+	0.515464	(0.515,0.57]	chr1	6099	19	UTR3	UTR3:EXON_MRNA	SELENON	ENSG00000162430.18	ENST00000361547.7:ENST00000374315.1	protein_coding	protein_coding	protein_coding	protein_coding	1	24	2	2.34087	3.190865	4.04086	0.0469761	0.0197045	0.151917	0.120063
chr15	82995712	82995812	6248754	0	-	0.54	(0.515,0.57]	chr15	596339	10	UTR3	UTR3:EXON_MRNA:INTRON	C15orf40	ENSG00000169609.14	ENST00000514272.2:ENST00000538348.6:ENST00000510873.6:ENST00000512638.5:ENST00000451195.7:ENST00000304177.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	24	2	2.34087	3.190865	4.04086	0.0469761	0.0197045	0.151917	0.120063
chr16	16604679	16604779	6311909	0	+	0.52	(0.515,0.57]	chr16	604098	1047	INTRON	INTRON	ENSG00000260126	ENSG00000260126.2	ENST00000567465.2	lncRNA	lncRNA	lncRNA	lncRNA	1	24	2	2.34087	3.190865	4.04086	0.0469761	0.0197045	0.151917	0.120063
chr19	10257325	10257424	7012348	0	+	0.535354	(0.515,0.57]	chr19	696497	1	INTRON	INTRON	MRPL4	ENSG00000105364.14	ENST00000592514.5:ENST00000591054.5:ENST00000307422.9:ENST00000590150.5:ENST00000590669.5:ENST00000253099.11:ENST00000393733.6:ENST00000588502.5:ENST00000590702.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	24	2	2.34087	3.190865	4.04086	0.0469761	0.0197045	0.151917	0.120063
chr19	47623995	47624095	7085911	0	+	0.57	(0.515,0.57]	chr19	709045	160	INTRON	INTRON	ENSG00000268746	ENSG00000268746.1	ENST00000599924.1	lncRNA	lncRNA	lncRNA	lncRNA	1	24	2	2.34087	3.190865	4.04086	0.0469761	0.0197045	0.151917	0.120063
chr19	47648775	47648874	7086159	0	+	0.545455	(0.515,0.57]	chr19	709045	408	INTRON	INTRON	ENSG00000268746	ENSG00000268746.1	ENST00000599924.1	lncRNA	lncRNA	lncRNA	lncRNA	1	24	2	2.34087	3.190865	4.04086	0.0469761	0.0197045	0.151917	0.120063
chr2	99358238	99358338	835020	0	+	0.53	(0.515,0.57]	chr2	93660	203	INTRON	INTRON	EIF5B	ENSG00000158417.11	ENST00000617677.1:ENST00000289371.11	protein_coding	protein_coding	protein_coding	protein_coding	1	24	2	2.34087	3.190865	4.04086	0.0469761	0.0197045	0.151917	0.120063
chr22	23259354	23259454	7483998	0	+	0.54	(0.515,0.57]	chr22	763557	50	INTRON	INTRON	BCR	ENSG00000186716.21	ENST00000479188.5:ENST00000359540.7:ENST00000305877.13:ENST00000480973.1:ENST00000427791.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	24	2	2.34087	3.190865	4.04086	0.0469761	0.0197045	0.151917	0.120063
chr6	15348220	15348320	2823969	0	+	0.52	(0.515,0.57]	chr6	265192	333	INTRON	INTRON	JARID2	ENSG00000008083.14	ENST00000341776.7:ENST00000397311.4	protein_coding	protein_coding	protein_coding	protein_coding	1	24	2	2.34087	3.190865	4.04086	0.0469761	0.0197045	0.151917	0.120063
chr6	129633345	129633443	3218038	0	-	0.520408	(0.515,0.57]	chr6	299113	35	INTRON	INTRON	ARHGAP18	ENSG00000146376.11	ENST00000368149.3	protein_coding	protein_coding	protein_coding	protein_coding	1	24	2	2.34087	3.190865	4.04086	0.0469761	0.0197045	0.151917	0.120063
chr8	33416744	33416844	3934474	0	-	0.53	(0.515,0.57]	chr8	360447	221	INTRON	INTRON	FUT10	ENSG00000172728.16	ENST00000327671.10:ENST00000518672.5:ENST00000524021.1:ENST00000520767.5:ENST00000518076.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	24	2	2.34087	3.190865	4.04086	0.0469761	0.0197045	0.151917	0.120063
chr3	142574448	142574548	1838949	0	-	0.34	(0.32,0.35]	chr3	184967	59	INTRON	INTRON	ATR	ENSG00000175054.16	ENST00000350721.9:ENST00000661310.1:ENST00000653868.1:ENST00000515149.3:ENST00000507148.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	44	2	1.61669	3.19085	4.76501	0.0578816	0.0114287	0.188651	0.0886611
chr2	182970539	182970638	1285335	0	-	0.323232	(0.32,0.35]	chr2	135354	28	INTRON	INTRON	NCKAP1	ENSG00000061676.15	ENST00000361354.9:ENST00000360982.2	protein_coding	protein_coding	protein_coding	protein_coding	5	57	2	1.42176	3.190735	4.95971	0.0511006	0.00663522	0.176696	0.0703181
chr11	118763896	118763986	5046092	0	-	0.322222	(0.32,0.35]	chr11	475775	2	INTRON	INTRON	DDX6	ENSG00000110367.14	ENST00000534980.7:ENST00000620157.4:ENST00000526070.2	protein_coding	protein_coding	protein_coding	protein_coding	3	85	2	2.89475	3.190475	3.4862	0.001711	0.00160352	0.037419	0.0367961
chr1	38018039	38018116	74322	0	+	0.402597	(0.378,0.408]	chr1	9600	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	UTP11	ENSG00000183520.12	ENST00000483182.5:ENST00000373014.5:ENST00000488453.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	77	2	2.73557	3.19043	3.64529	0.00360869	4.71767e-4	0.0533855	0.0196294
chr1	100113263	100113362	515661	0	-	0.50505	(0.476,0.515]	chr1	60466	24	INTRON	INTRON	SASS6	ENSG00000156876.10	ENST00000462159.1:ENST00000287482.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	76	2	3.05152	3.19042	3.32932	0.0064848	1.60666e-4	0.0699952	0.0109124
chr12	4275311	4275407	5067420	0	+	0.40625	(0.378,0.408]	chr12	478271	7	INTRON	INTRON	CCND2	ENSG00000118971.9	ENST00000676411.1:ENST00000676279.1:ENST00000261254.8:ENST00000675880.1:ENST00000536537.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	39	2	2.05897	3.1903550000000003	4.32174	0.0339294	0.0132362	0.134508	0.0999551
chr10	133413511	133413611	4540414	0	+	0.41	(0.408,0.44]	chr10	419095	104	INTRON	INTRON	MTG1	ENSG00000148824.19	ENST00000477902.6:ENST00000317502.11:ENST00000432508.3:ENST00000460848.5:ENST00000473735.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	89	2	2.85572	3.190215	3.52471	0.00112428	4.26582e-4	0.0306963	0.0184578
chr16	23494402	23494478	6464423	0	-	0.513158	(0.476,0.515]	chr16	623891	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	GGA2	ENSG00000103365.15	ENST00000309859.8:ENST00000567468.5:ENST00000570111.5:ENST00000568799.1:ENST00000563494.5:ENST00000569300.5:ENST00000569189.2:ENST00000563047.1:ENST00000562944.5:ENST00000562117.1:ENST00000566651.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	55	2	2.8863	3.1902049999999997	3.49411	0.0111679	9.23453e-4	0.0877435	0.0278392
chr2	241679728	241679828	1349365	0	-	0.48	(0.476,0.515]	chr2	141794	1	SS5_PROX	SS5_PROX:INTRON	DTYMK	ENSG00000168393.13	ENST00000400770.6:ENST00000305784.7:ENST00000445261.5:ENST00000432348.5:ENST00000420144.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	55	2	2.8863	3.1902049999999997	3.49411	0.0111679	9.23453e-4	0.0877435	0.0278392
chr8	102355477	102355577	4012179	0	-	0.24	[0,0.28]	chr8	367218	80	INTRON	INTRON	UBR5	ENSG00000104517.13	ENST00000520539.6:ENST00000220959.8:ENST00000521922.5	protein_coding	protein_coding	protein_coding	protein_coding	2	78	2	2.89982	3.190035	3.48025	0.0158893	0.00162172	0.101453	0.0369782
chr4	32015311	32015411	1941601	0	+	0.46	(0.44,0.476]	chr4	194727	171	INTRON	INTRON	LINC02506	ENSG00000251129.3	ENST00000662669.1:ENST00000665582.2:ENST00000667252.2:ENST00000660373.2:ENST00000684849.1:ENST00000513211.2:ENST00000659613.1:ENST00000657576.1:ENST00000686730.1:ENST00000685407.1:ENST00000685455.1:ENST00000655951.1	lncRNA	lncRNA	lncRNA	lncRNA	7	153	2	2.70252	3.18998	3.67744	2.59902e-4	2.09874e-5	0.0148796	0.00354405
chr7	129474594	129474693	3411976	0	+	0.484848	(0.476,0.515]	chr7	318984	35	INTRON	INTRON	STRIP2	ENSG00000128578.10	ENST00000249344.7:ENST00000435494.2	protein_coding	protein_coding	protein_coding	protein_coding	3	43	2	1.52615	3.1899699999999998	4.85379	0.0739267	0.00234214	0.190914	0.0442989
chrX	71540669	71540769	7680023	0	+	0.52	(0.515,0.57]	chrX	786397	22	INTRON	INTRON	OGT	ENSG00000147162.14	ENST00000373719.8:ENST00000488174.5:ENST00000373701.7:ENST00000498566.3:ENST00000444774.3:ENST00000455587.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	25	469	2	3.0815	3.1899550000000003	3.29841	8.45439e-7	2.10912e-8	5.65267e-4	5.31131e-5
chr8	27826204	27826304	3927215	0	-	0.33	(0.32,0.35]	chr8	359598	26	INTRON	INTRON	PBK	ENSG00000168078.10	ENST00000301905.9:ENST00000522944.5:ENST00000524266.1:ENST00000521226.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	87	2	2.3471	3.189955	4.03281	0.0156413	8.51676e-5	0.101393	0.00780562
chr13	28201143	28201243	5461459	0	+	0.45	(0.44,0.476]	chr13	523261	34	INTRON	INTRON	PAN3	ENSG00000152520.14	ENST00000503791.5:ENST00000380958.8:ENST00000399613.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	99	2	3.15639	3.189945	3.2235	3.98783e-4	3.93757e-4	0.0185763	0.0178567
chr3	172052040	172052140	1559668	0	+	0.38	(0.378,0.408]	chr3	161527	47	INTRON	INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000421757.5:ENST00000469491.5:ENST00000336824.8:ENST00000423424.5:ENST00000416957.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	77	2	3.18608	3.18988	3.19368	0.00426861	3.50013e-4	0.0573912	0.0166791
chr1	37705967	37706067	74157	0	+	0.55	(0.515,0.57]	chr1	9557	4	SS5_PROX	SS5_PROX:INTRON	CDCA8	ENSG00000134690.11	ENST00000327331.2:ENST00000373055.6	protein_coding	protein_coding	protein_coding	protein_coding	3	39	2	1.69407	3.189875	4.68568	0.0459452	0.00270027	0.149888	0.0479115
chr17	29409698	29409798	6585829	0	+	0.31	(0.28,0.32]	chr17	640377	57	INTRON	INTRON	TAOK1	ENSG00000160551.12	ENST00000261716.8:ENST00000583121.5:ENST00000587277.1:ENST00000536202.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	40	2	2.13651	3.1898549999999997	4.2432	0.0479043	0.0265696	0.153019	0.134088
chr7	123735918	123736018	3632530	0	-	0.32	(0.28,0.32]	chr7	337581	263	INTRON	INTRON	WASL	ENSG00000106299.8	ENST00000223023.5	protein_coding	protein_coding	protein_coding	protein_coding	2	40	2	2.13651	3.1898549999999997	4.2432	0.0479043	0.0265696	0.153019	0.134088
chr19	57905575	57905674	7216859	0	-	0.363636	(0.35,0.378]	chr19	733160	35	INTRON	INTRON	ZNF417	ENSG00000173480.11	ENST00000594396.1	protein_coding	protein_coding	protein_coding	protein_coding	3	42	2	1.58862	3.189705	4.79079	0.0615516	0.00846427	0.193423	0.0776969
chr21	21197454	21197554	7380984	0	+	0.36	(0.35,0.378]	chr21	752602	1985	INTRON	INTRON	NCAM2	ENSG00000154654.15	ENST00000400546.6	protein_coding	protein_coding	protein_coding	protein_coding	3	42	2	1.58862	3.189705	4.79079	0.0615516	0.00846427	0.193423	0.0776969
chr7	140795963	140796063	3662430	0	-	0.36	(0.35,0.378]	chr7	340057	11	INTRON	INTRON	BRAF	ENSG00000157764.14	ENST00000496384.7:ENST00000644969.2:ENST00000644120.1:ENST00000642875.1:ENST00000646891.1:ENST00000644905.1:ENST00000642228.1:ENST00000288602.11:ENST00000646730.1:ENST00000644650.1:ENST00000647434.1:ENST00000497784.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	42	2	1.58862	3.189705	4.79079	0.0615516	0.00846427	0.193423	0.0776969
chr22	21781068	21781168	7560514	0	-	0.59	(0.57,1]	chr22	773360	77	INTRON	INTRON	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	4	48	2	2.46083	3.18938	3.91793	0.00255312	5.86096e-5	0.0466386	0.00668534
chr7	76059075	76059175	3339768	0	+	0.46	(0.44,0.476]	chr7	311009	6	INTRON	INTRON	MDH2	ENSG00000146701.12	ENST00000443006.5:ENST00000315758.10:ENST00000432020.2	protein_coding	protein_coding	protein_coding	protein_coding	2	55	2	3.17572	3.18931	3.2029	0.00427037	0.00308681	0.0573912	0.0510391
chr15	60348381	60348477	6194811	0	-	0.4375	(0.408,0.44]	chr15	590252	3	INTRON	INTRON	ANXA2	ENSG00000182718.18	ENST00000396024.7:ENST00000559818.6:ENST00000679109.1:ENST00000676687.1:ENST00000558169.6:ENST00000557906.6:ENST00000558558.6:ENST00000559113.6:ENST00000559780.6:ENST00000559956.6:ENST00000560468.6:ENST00000678870.1:ENST00000678061.1:ENST00000678450.1:ENST00000677968.1:ENST00000451270.7:ENST00000558985.6:ENST00000678796.1:ENST00000559647.2:ENST00000332680.8:ENST00000560014.5:ENST00000504475.6:ENST00000421017.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	34	2	2.14732	3.18914	4.23096	0.0278028	0.0237354	0.129075	0.123904
chr3	47805520	47805620	1419982	0	+	0.44	(0.408,0.44]	chr3	149170	1	SS5_PROX	SS5_PROX:INTRON	DHX30	ENSG00000132153.15	ENST00000472718.5:ENST00000476446.5:ENST00000415400.5:ENST00000492893.5:ENST00000395745.6:ENST00000445061.6:ENST00000441384.5:ENST00000348968.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	34	2	2.14732	3.18914	4.23096	0.0278028	0.0237354	0.129075	0.123904
chr4	32079769	32079869	1942246	0	+	0.44	(0.408,0.44]	chr4	194727	816	INTRON	INTRON	LINC02506	ENSG00000251129.3	ENST00000662669.1:ENST00000665582.2:ENST00000667252.2:ENST00000660373.2:ENST00000684849.1:ENST00000513211.2:ENST00000659613.1:ENST00000657576.1:ENST00000686730.1:ENST00000685407.1:ENST00000685455.1:ENST00000655951.1	lncRNA	lncRNA	lncRNA	lncRNA	2	34	2	2.14732	3.18914	4.23096	0.0278028	0.0237354	0.129075	0.123904
chrX	47200207	47200300	7655630	0	+	0.430108	(0.408,0.44]	chrX	783215	2	INTRON	INTRON	UBA1	ENSG00000130985.17	ENST00000377351.8:ENST00000412206.5:ENST00000335972.11:ENST00000442035.5:ENST00000451702.2	protein_coding	protein_coding	protein_coding	protein_coding	2	34	2	2.14732	3.18914	4.23096	0.0278028	0.0237354	0.129075	0.123904
chr3	33826580	33826679	1394671	0	+	0.252525	[0,0.28]	chr3	146059	1	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	PDCD6IP	ENSG00000170248.15	ENST00000457054.6:ENST00000648706.1:ENST00000307296.8:ENST00000459659.1:ENST00000412887.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	52	2	1.75741	3.189125	4.62084	0.0424454	0.0313633	0.161763	0.13151
chr9	111929248	111929331	4184785	0	+	0.26506	[0,0.28]	chr9	381717	1	EXON_LNCRNA	EXON_LNCRNA:SS3_PROX:INTRON	UGCG	ENSG00000148154.10	ENST00000374279.4:ENST00000495085.1:ENST00000474306.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	52	2	1.75741	3.189125	4.62084	0.0424454	0.0313633	0.161763	0.13151
chr1	245897948	245898048	674603	0	-	0.48	(0.476,0.515]	chr1	79681	337	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000366517.5:ENST00000366516.5:ENST00000490107.6:ENST00000470510.5:ENST00000493441.5:ENST00000488153.5:ENST00000492487.5:ENST00000391836.3:ENST00000464398.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	27	2	2.40608	3.189045	3.97201	0.0425709	0.030904	0.148082	0.143385
chr1	246549390	246549484	680815	0	-	0.5	(0.476,0.515]	chr1	79804	4	INTRON	INTRON	TFB2M	ENSG00000162851.8	ENST00000366514.5	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	2.40608	3.189045	3.97201	0.0425709	0.030904	0.148082	0.143385
chr17	50744913	50744989	6627240	0	+	0.513158	(0.476,0.515]	chr17	647234	1	SS5_PROX	SS5_PROX:INTRON	LUC7L3	ENSG00000108848.16	ENST00000393227.6:ENST00000505658.6:ENST00000240304.5:ENST00000508482.5:ENST00000504065.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	27	2	2.40608	3.189045	3.97201	0.0425709	0.030904	0.148082	0.143385
chr8	99766073	99766173	3818848	0	+	0.48	(0.476,0.515]	chr8	353339	447	INTRON	INTRON	VPS13B	ENSG00000132549.20	ENST00000683334.1:ENST00000357162.7:ENST00000358544.7:ENST00000682153.1:ENST00000682358.1:ENST00000518569.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	27	2	2.40608	3.189045	3.97201	0.0425709	0.030904	0.148082	0.143385
chr9	4870095	4870195	4095652	0	+	0.48	(0.476,0.515]	chr9	373219	88	INTRON	INTRON	RCL1	ENSG00000120158.12	ENST00000445485.1	protein_coding	processed_transcript	protein_coding	processed_transcript	1	27	2	2.40608	3.189045	3.97201	0.0425709	0.030904	0.148082	0.143385
chr19	4116321	4116421	7119464	0	-	0.49	(0.476,0.515]	chr19	716176	53	INTRON	INTRON	MAP2K2	ENSG00000126934.15	ENST00000262948.10:ENST00000394867.9:ENST00000687128.1:ENST00000599345.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	34	2	2.13304	3.189025	4.24501	0.024866	0.0247713	0.132101	0.12011
chr5	172995222	172995322	2548282	0	+	0.51	(0.476,0.515]	chr5	243296	4	SS5_PROX	SS5_PROX:INTRON	ATP6V0E1	ENSG00000113732.9	ENST00000519374.6:ENST00000519911.5:ENST00000265093.4:ENST00000517669.1	protein_coding	protein_coding	protein_coding	protein_coding	2	34	2	2.13304	3.189025	4.24501	0.024866	0.0247713	0.132101	0.12011
chrX	44932984	44933084	7649200	0	+	0.49	(0.476,0.515]	chrX	782726	586	INTRON	INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000675440.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000621147.5:ENST00000475233.1:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	34	2	2.13304	3.189025	4.24501	0.024866	0.0247713	0.132101	0.12011
chr1	19166433	19166521	386363	0	-	0.306818	(0.28,0.32]	chr1	45998	3	INTRON	INTRON	UBR4	ENSG00000127481.15	ENST00000375254.8:ENST00000417040.1:ENST00000419533.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	47	2	1.71442	3.189005	4.66359	0.0454351	0.0193496	0.164236	0.108861
chr20	63196018	63196116	7362577	0	-	0.581633	(0.57,1]	chr20	751220	7	UTR3	UTR3:EXON_MRNA	YTHDF1	ENSG00000149658.18	ENST00000370339.8	protein_coding	protein_coding	protein_coding	protein_coding	3	40	2	2.88261	3.18889	3.49517	0.00118949	6.03609e-4	0.031662	0.0226059
chr9	73167790	73167869	4142547	0	+	0.379747	(0.378,0.408]	chr9	377577	4	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	ANXA1	ENSG00000135046.14	ENST00000257497.11:ENST00000376911.1:ENST00000495713.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	118	2	3.14892	3.188735	3.22855	0.00499984	1.59946e-5	0.0617433	0.00301858
chr3	168056062	168056162	1854541	0	-	0.6	(0.57,1]	chr3	186419	73	INTRON	INTRON	GOLIM4	ENSG00000173905.9	ENST00000470487.6:ENST00000309027.4	protein_coding	protein_coding	protein_coding	protein_coding	2	31	2	3.02967	3.18859	3.34751	0.00471306	0.00122677	0.0631419	0.0320791
chr1	16641466	16641566	383795	0	-	0.39	(0.378,0.408]	chr1	45226	59	INTRON	INTRON	CROCCP2	ENSG00000215908.10	ENST00000639456.1:ENST00000412962.4:ENST00000635081.1:ENST00000362058.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	4	48	2	1.71374	3.18856	4.66338	0.0274158	0.0103469	0.136498	0.0850389
chr1	227265906	227266006	651195	0	-	0.33	(0.32,0.35]	chr1	77110	8	INTRON	INTRON	CDC42BPA	ENSG00000143776.20	ENST00000366766.8:ENST00000366769.7:ENST00000334218.9:ENST00000366767.7:ENST00000366764.8:ENST00000478573.6:ENST00000682551.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	27	2	2.31405	3.18852	4.06299	0.0559439	0.0517107	0.176696	0.165463
chr10	21632627	21632726	4405406	0	+	0.343434	(0.32,0.35]	chr10	406487	75	INTRON	INTRON	MLLT10	ENSG00000078403.17	ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000651298.1:ENST00000377059.7:ENST00000652258.1:ENST00000651382.1:ENST00000438473.6:ENST00000650921.1:ENST00000651405.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	27	2	2.31405	3.18852	4.06299	0.0559439	0.0517107	0.176696	0.165463
chr12	94446693	94446793	5389982	0	-	0.35	(0.32,0.35]	chr12	513890	110	INTRON	INTRON	CEP83	ENSG00000173588.16	ENST00000397809.10:ENST00000339839.9:ENST00000547232.5:ENST00000547575.5:ENST00000546527.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	27	2	2.31405	3.18852	4.06299	0.0559439	0.0517107	0.176696	0.165463
chr12	104334332	104334432	5210500	0	+	0.33	(0.32,0.35]	chr12	493283	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	TXNRD1	ENSG00000198431.17	ENST00000525566.6:ENST00000503506.6:ENST00000526691.5:ENST00000526390.5:ENST00000529546.5:ENST00000524698.5:ENST00000527688.5:ENST00000526950.1:ENST00000525265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	27	2	2.31405	3.18852	4.06299	0.0559439	0.0517107	0.176696	0.165463
chr16	68269106	68269206	6371910	0	+	0.34	(0.32,0.35]	chr16	612331	20	INTRON	INTRON	SLC7A6	ENSG00000103064.15	ENST00000618043.4:ENST00000648130.1:ENST00000219343.11:ENST00000379152.7:ENST00000566834.5:ENST00000566454.5:ENST00000568088.5:ENST00000564708.1:ENST00000562727.1:ENST00000563080.1:ENST00000563146.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	27	2	2.31405	3.18852	4.06299	0.0559439	0.0517107	0.176696	0.165463
chr19	19884320	19884419	7036887	0	+	0.343434	(0.32,0.35]	chr19	701600	38	INTRON	INTRON	ZNF253	ENSG00000256771.5	ENST00000589717.2:ENST00000592725.1:ENST00000355650.4	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	2.31405	3.18852	4.06299	0.0559439	0.0517107	0.176696	0.165463
chr3	154307875	154307973	1843368	0	-	0.346939	(0.32,0.35]	chr3	185450	12	INTRON	INTRON	DHX36	ENSG00000174953.14	ENST00000496811.6:ENST00000308361.10:ENST00000329463.9:ENST00000481941.5	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	2.31405	3.18852	4.06299	0.0559439	0.0517107	0.176696	0.165463
chr4	2546556	2546656	1912615	0	+	0.34	(0.32,0.35]	chr4	191976	90	INTRON	INTRON	RNF4:FAM193A	ENSG00000063978.16:ENSG00000125386.16	ENST00000508235.1:ENST00000637812.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	27	2	2.31405	3.18852	4.06299	0.0559439	0.0517107	0.176696	0.165463
chr5	1572286	1572386	2565711	0	-	0.34	(0.32,0.35]	chr5	245753	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	SDHAP3	ENSG00000185986.13	ENST00000652578.1:ENST00000684972.1:ENST00000690867.1:ENST00000689786.1:ENST00000515467.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	1	27	2	2.31405	3.18852	4.06299	0.0559439	0.0517107	0.176696	0.165463
chr5	69117138	69117238	2379824	0	+	0.34	(0.32,0.35]	chr5	229108	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	SLC30A5	ENSG00000145740.20	ENST00000396591.8:ENST00000507354.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	27	2	2.31405	3.18852	4.06299	0.0559439	0.0517107	0.176696	0.165463
chr7	24960787	24960887	3505633	0	-	0.35	(0.32,0.35]	chr7	327114	428	INTRON	INTRON	OSBPL3	ENSG00000070882.13	ENST00000313367.7:ENST00000415952.1	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	2.31405	3.18852	4.06299	0.0559439	0.0517107	0.176696	0.165463
chr7	98891140	98891238	3359382	0	+	0.326531	(0.32,0.35]	chr7	313376	3	INTRON	INTRON	TRRAP	ENSG00000196367.14	ENST00000355540.7:ENST00000359863.8:ENST00000628380.2:ENST00000456197.2:ENST00000446306.7	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	2.31405	3.18852	4.06299	0.0559439	0.0517107	0.176696	0.165463
chrX	110038827	110038927	7700395	0	+	0.35	(0.32,0.35]	chrX	788130	343	INTRON	INTRON	TMEM164	ENSG00000157600.12	ENST00000372072.7:ENST00000471255.5:ENST00000372073.5:ENST00000372068.7:ENST00000288381.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	27	2	2.31405	3.18852	4.06299	0.0559439	0.0517107	0.176696	0.165463
chr3	6692798	6692867	1358173	0	+	0.405797	(0.378,0.408]	chr3	142525	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ENSG00000189229:ENSG00000223719	ENSG00000189229.12:ENSG00000223719.1	ENST00000433639.1:ENST00000655754.1:ENST00000658468.1:ENST00000669512.1:ENST00000667028.1:ENST00000655541.1:ENST00000668643.1:ENST00000671568.1:ENST00000671036.1:ENST00000669798.1:ENST00000655753.1:ENST00000655856.1:ENST00000658398.1:ENST00000661518.1:ENST00000661279.1:ENST00000655495.1:ENST00000663041.1:ENST00000659827.1:ENST00000667716.1:ENST00000668416.1:ENST00000658133.1:ENST00000342990.4:ENST00000660054.1:ENST00000671370.1:ENST00000454211.1	lncRNA	lncRNA	lncRNA:processed_pseudogene	lncRNA:processed_pseudogene	3	45	2	1.53052	3.188395	4.84627	0.0744544	0.00254319	0.192012	0.0465056
chr17	57258454	57258554	6632760	0	+	0.47	(0.44,0.476]	chr17	647980	1	SS5_PROX	SS5_PROX:INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000581776.5:ENST00000581523.5:ENST00000674961.1:ENST00000582453.5:ENST00000675656.1:ENST00000322684.7:ENST00000579590.5:ENST00000579531.5:ENST00000676073.1:ENST00000676105.1:ENST00000584476.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	73	2	2.94321	3.18813	3.43305	0.00159668	0.00111162	0.0364566	0.0305384
chr3	9401463	9401562	1358922	0	+	0.313131	(0.28,0.32]	chr3	142655	31	INTRON	INTRON	SETD5	ENSG00000168137.20	ENST00000402198.7:ENST00000431285.5:ENST00000683012.1:ENST00000463180.5:ENST00000478475.5:ENST00000415650.5:ENST00000682536.1:ENST00000663774.1:ENST00000665872.1:ENST00000666307.1:ENST00000693430.1:ENST00000691925.1:ENST00000684606.1:ENST00000691175.1:ENST00000688835.1:ENST00000683262.1:ENST00000443339.5:ENST00000406341.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	111	2	2.7703700000000002	3.188025	3.60568	0.00127168	8.96564e-4	0.032635	0.0273866
chr12	4559280	4559376	5067956	0	+	0.333333	(0.32,0.35]	chr12	478375	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	RAD51AP1	ENSG00000111247.15	ENST00000228843.13:ENST00000352618.9:ENST00000442992.6:ENST00000535558.5:ENST00000544931.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	52	2	1.68188	3.1878400000000005	4.6938	0.031521	0.0137794	0.144381	0.0949306
chr12	68657910	68658006	5161695	0	+	0.385417	(0.378,0.408]	chr12	488634	3	INTRON	INTRON	RAP1B	ENSG00000127314.18	ENST00000393436.9:ENST00000250559.14:ENST00000425247.6:ENST00000450214.6:ENST00000463493.5:ENST00000537460.5:ENST00000543393.5:ENST00000540209.5:ENST00000542145.5:ENST00000539091.5:ENST00000543697.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	57	2	2.90162	3.1876949999999997	3.47377	0.0113157	0.00103087	0.0886121	0.0294094
chr15	94918226	94918326	6105816	0	+	0.48	(0.476,0.515]	chr15	581682	133	INTRON	INTRON	ENSG00000277654	ENSG00000277654.6	ENST00000618611.4:ENST00000648065.1:ENST00000618377.1:ENST00000621842.4:ENST00000615751.4:ENST00000614581.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	6	142	2	3.12428	3.187645	3.25101	9.82343e-5	7.2893e-5	0.0083372	0.00767614
chr12	123606559	123606659	5243200	0	+	0.4	(0.378,0.408]	chr12	498301	4	SS5_PROX	SS5_PROX:INTRON	DDX55	ENSG00000111364.16	ENST00000542286.5:ENST00000544429.5:ENST00000238146.9:ENST00000545042.1:ENST00000544738.5:ENST00000538744.5:ENST00000540763.5:ENST00000354291.8:ENST00000536079.5:ENST00000539934.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	16	378	2	3.14714	3.187635	3.22813	2.95639e-6	1.54009e-6	0.00120829	7.43638e-4
chr7	152373965	152374065	3680673	0	-	0.4	(0.378,0.408]	chr7	341660	149	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000682301.1:ENST00000452749.2:ENST00000680867.1:ENST00000683800.1:ENST00000684278.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	58	2	2.72993	3.1876100000000003	3.64529	0.0188736	4.71767e-4	0.108861	0.0196294
chr12	122591953	122592049	5241280	0	+	0.6875	(0.57,1]	chr12	497799	1	INTRON	INTRON	KNTC1	ENSG00000184445.12	ENST00000450485.6:ENST00000333479.12	protein_coding	protein_coding	protein_coding	protein_coding	5	58	2	2.81597	3.1875850000000003	3.5592	4.21089e-4	1.20267e-4	0.0183576	0.00992311
chr3	15056319	15056417	1619952	0	-	0.44898	(0.44,0.476]	chr3	167447	25	INTRON	INTRON	MRPS25	ENSG00000131368.9	ENST00000695375.1:ENST00000695376.1:ENST00000695377.1:ENST00000695378.1:ENST00000695379.1:ENST00000695380.1:ENST00000695381.1:ENST00000695382.1:ENST00000496484.2:ENST00000695334.1:ENST00000695384.1:ENST00000695322.1:ENST00000447299.2:ENST00000695383.1:ENST00000474866.2:ENST00000695385.1:ENST00000695386.1:ENST00000420267.6:ENST00000695387.1:ENST00000695388.1:ENST00000695389.1:ENST00000695390.1:ENST00000695391.1:ENST00000695392.1:ENST00000449354.7:ENST00000695393.1:ENST00000695394.1:ENST00000253686.7:ENST00000695395.1:ENST00000695323.1:ENST00000444840.6:ENST00000695396.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	74	2	2.47339	3.1875150000000003	3.90164	0.0090196	1.25572e-4	0.080367	0.00957656
chr2	108557237	108557337	846074	0	+	0.49	(0.476,0.515]	chr2	94661	223	INTRON	INTRON	LIMS1	ENSG00000169756.17	ENST00000695516.1:ENST00000544547.6:ENST00000695517.1	protein_coding	protein_coding	protein_coding	protein_coding	5	100	2	2.34237	3.18747	4.03257	0.00223831	9.96835e-5	0.0435144	0.00903184
chr8	90529565	90529665	3795401	0	+	0.48	(0.476,0.515]	chr8	351834	95	INTRON	INTRON	LINC00534	ENSG00000253394.7	ENST00000655523.1:ENST00000658299.1:ENST00000662692.1:ENST00000667296.1:ENST00000653734.1:ENST00000654785.1:ENST00000524361.5:ENST00000668745.1:ENST00000671657.1	lncRNA	lncRNA	lncRNA	lncRNA	3	73	2	2.76855	3.18741	3.60627	0.00244302	7.49088e-4	0.0456956	0.0251179
chr16	70569641	70569729	6385633	0	+	0.556818	(0.515,0.57]	chr16	614001	1	SS3_PROX	SS3_PROX:INTRON	SF3B3	ENSG00000189091.13	ENST00000302516.10	protein_coding	protein_coding	protein_coding	protein_coding	2	33	2	2.08547	3.18734	4.28921	0.0289426	0.00990051	0.1274	0.0877296
chr5	54371764	54371864	2354340	0	+	0.52	(0.515,0.57]	chr5	227061	311	INTRON	INTRON	LINC01033	ENSG00000249069.8	ENST00000665899.1:ENST00000653566.1:ENST00000655801.1:ENST00000654906.1:ENST00000667636.1:ENST00000665869.1:ENST00000664079.1:ENST00000659703.1:ENST00000662351.1:ENST00000523194.7:ENST00000665795.1:ENST00000667992.1:ENST00000662022.1:ENST00000657771.1:ENST00000517934.1	lncRNA	lncRNA	lncRNA	lncRNA	2	33	2	2.08547	3.18734	4.28921	0.0289426	0.00990051	0.1274	0.0877296
chr2	20264258	20264357	1075901	0	-	0.454545	(0.44,0.476]	chr2	114960	4	INTRON	INTRON	PUM2	ENSG00000055917.16	ENST00000338086.9:ENST00000361078.7:ENST00000440577.5	protein_coding	protein_coding	protein_coding	protein_coding	7	152	2	3.02928	3.187325	3.34537	2.18713e-4	2.16138e-5	0.0135522	0.00361845
chr1	12422115	12422214	30230	0	+	0.414141	(0.408,0.44]	chr1	3762	49	INTRON	INTRON	VPS13D	ENSG00000048707.15	ENST00000620676.6:ENST00000613099.4:ENST00000011700.10:ENST00000646411.1:ENST00000543710.5:ENST00000645371.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	40	2	1.69566	3.1873	4.67894	0.0453922	0.0087648	0.164236	0.0788605
chr1	179174271	179174371	592525	0	-	0.44	(0.408,0.44]	chr1	71074	313	INTRON	INTRON	ABL2	ENSG00000143322.21	ENST00000502732.6:ENST00000367623.8:ENST00000507173.5:ENST00000511413.5:ENST00000668691.1:ENST00000392043.4:ENST00000660584.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	40	2	1.69566	3.1873	4.67894	0.0453922	0.0087648	0.164236	0.0788605
chr12	112107217	112107317	5415413	0	-	0.46	(0.44,0.476]	chr12	517255	94	INTRON	INTRON	NAA25	ENSG00000111300.10	ENST00000261745.9:ENST00000552527.5:ENST00000549711.5:ENST00000551858.1:ENST00000547133.1:ENST00000548627.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	33	2	1.85146	3.1870800000000004	4.5227	0.0545846	0.0128818	0.182529	0.0926667
chr2	53867280	53867380	1119485	0	-	0.47	(0.44,0.476]	chr2	119859	4	SS3_PROX	SS3_PROX:INTRON	PSME4	ENSG00000068878.15	ENST00000404125.6:ENST00000389993.7:ENST00000476586.5:ENST00000488687.5:ENST00000466539.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	33	2	1.85146	3.1870800000000004	4.5227	0.0545846	0.0128818	0.182529	0.0926667
chr12	69255773	69255866	5163667	0	+	0.505376	(0.476,0.515]	chr12	489012	8	UTR3	UTR3:EXON_MRNA:INTRON	CPSF6	ENSG00000111605.18	ENST00000435070.7:ENST00000650046.1:ENST00000456847.7:ENST00000266679.8:ENST00000551516.1:ENST00000547486.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	40	2	1.68092	3.18706	4.6932	0.0474026	0.00753088	0.169265	0.074841
chr2	86964606	86964704	824648	0	+	0.510204	(0.476,0.515]	chr2	92143	10	INTRON	INTRON	RGPD1	ENSG00000187627.17	ENST00000409776.6:ENST00000398193.8:ENST00000641458.2	protein_coding	protein_coding	protein_coding	protein_coding	3	40	2	1.68092	3.18706	4.6932	0.0474026	0.00753088	0.169265	0.074841
chr7	130037066	130037166	3638174	0	-	0.48	(0.476,0.515]	chr7	338284	1	SS3_PROX	SS3_PROX:INTRON	ZC3HC1	ENSG00000091732.17	ENST00000311873.9:ENST00000358303.9:ENST00000360708.9:ENST00000467642.5:ENST00000648450.1:ENST00000481503.5:ENST00000477578.5:ENST00000471022.5:ENST00000483827.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	40	2	1.68092	3.18706	4.6932	0.0474026	0.00753088	0.169265	0.074841
chr19	1029671	1029771	6993195	0	+	0.41	(0.408,0.44]	chr19	692503	22	INTRON	INTRON	CNN2	ENSG00000064666.15	ENST00000562015.5:ENST00000263097.9:ENST00000348419.7:ENST00000565096.6:ENST00000562958.6:ENST00000569352.6:ENST00000568865.3:ENST00000606983.5:ENST00000607102.1:ENST00000562075.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	40	2	2.26792	3.1869300000000003	4.10594	0.0219367	0.0179973	0.123836	0.106756
chr10	68335112	68335211	4440789	0	+	0.333333	(0.32,0.35]	chr10	409480	25	INTRON	INTRON	HNRNPH3	ENSG00000096746.18	ENST00000469172.5:ENST00000461310.5:ENST00000265866.12:ENST00000480987.5:ENST00000486854.5:ENST00000467249.1:ENST00000354695.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	166	2	3.08557	3.186855	3.28814	2.85124e-4	5.02054e-5	0.0154954	0.00581045
chr6	31757421	31757513	2843671	0	+	0.478261	(0.476,0.515]	chr6	267823	1	EXON_LNCRNA	EXON_LNCRNA:INTRON	MSH5:MSH5-SAPCD1	ENSG00000204410.16:ENSG00000255152.8	ENST00000375755.8:ENST00000375750.9:ENST00000650702.1:ENST00000493662.6:ENST00000375703.7:ENST00000375740.7:ENST00000423982.6:ENST00000463144.5:ENST00000450148.5:ENST00000468602.5:ENST00000468136.5:ENST00000395853.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	204	2	3.13935	3.186845	3.23434	4.57431e-5	5.54146e-6	0.005846	0.00163632
chr17	66646910	66647010	6665746	0	+	0.37	(0.35,0.378]	chr17	650352	10	INTRON	INTRON	PRKCA	ENSG00000154229.12	ENST00000413366.8:ENST00000578063.5:ENST00000284384.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	39	2	1.87717	3.1867150000000004	4.49626	0.0555068	0.00917582	0.165463	0.0855292
chr4	15611566	15611665	2114415	0	-	0.313131	(0.28,0.32]	chr4	208817	54	INTRON	INTRON	FBXL5	ENSG00000118564.15	ENST00000341285.8:ENST00000412094.6:ENST00000511441.5:ENST00000513163.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	92	2	2.97299	3.1867	3.40041	0.00273088	0.00126436	0.0467642	0.0329641
chr3	48716881	48716957	1689706	0	-	0.618421	(0.57,1]	chr3	172881	4	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	IP6K2	ENSG00000068745.15	ENST00000328631.10:ENST00000449563.5:ENST00000413654.5:ENST00000443853.5:ENST00000437427.5:ENST00000412850.5:ENST00000454335.5:ENST00000340879.8:ENST00000432678.6:ENST00000433104.2:ENST00000416707.1:ENST00000431721.6:ENST00000449610.5:ENST00000413298.5:ENST00000446860.5:ENST00000412795.5:ENST00000417896.1:ENST00000443964.1:ENST00000436134.5:ENST00000440424.5:ENST00000434860.1:ENST00000424035.1:ENST00000476645.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	40	2	1.80956	3.186605	4.56365	0.00831365	0.00129848	0.0774402	0.0333764
chr1	235316818	235316918	663749	0	-	0.26	[0,0.28]	chr1	78552	557	INTRON	INTRON	ARID4B	ENSG00000054267.22	ENST00000349213.7:ENST00000366603.6:ENST00000264183.9:ENST00000421364.5:ENST00000491632.5:ENST00000418304.1:ENST00000466653.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	204	2	2.20251	3.186535	4.17056	0.00134553	1.81596e-4	0.0337766	0.0122264
chr17	51107668	51107768	6796886	0	-	0.43	(0.408,0.44]	chr17	671024	276	INTRON	INTRON	SPAG9	ENSG00000008294.22	ENST00000262013.12:ENST00000505279.5:ENST00000357122.8	protein_coding	protein_coding	protein_coding	protein_coding	2	57	2	2.6542	3.18647	3.71874	0.0227514	3.17998e-4	0.117618	0.0159645
chr1	28769226	28769317	58672	0	+	0.274725	[0,0.28]	chr1	7609	4	UTR3	UTR3:EXON_MRNA	YTHDF2	ENSG00000198492.16	ENST00000542507.5:ENST00000373812.8:ENST00000541996.5	protein_coding	protein_coding	protein_coding	protein_coding	7	221	2	2.55385	3.186235	3.81862	7.41378e-4	7.24407e-5	0.024913	0.00767422
chr17	22111292	22111392	6578776	0	+	0.26	[0,0.28]	chr17	639556	200	INTRON	INTRON	UBBP4	ENSG00000263563.7	ENST00000648259.1:ENST00000688301.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	3	107	2	2.33825	3.18607	4.03389	0.0195228	1.46948e-4	0.109483	0.0105341
chr2	27358394	27358492	717562	0	+	0.459184	(0.44,0.476]	chr2	83195	7	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	GTF3C2-AS2	ENSG00000234072.1	ENST00000447070.1:ENST00000412749.1	lncRNA	lncRNA	lncRNA	lncRNA	3	75	2	2.91252	3.186045	3.45957	0.00164027	0.00106385	0.0369207	0.0300133
chr19	58568067	58568166	7218584	0	-	0.414141	(0.408,0.44]	chr19	733429	36	INTRON	INTRON	MZF1	ENSG00000099326.9	ENST00000215057.7:ENST00000594234.5:ENST00000599369.5	protein_coding	protein_coding	protein_coding	protein_coding	6	143	2	3.16425	3.18594	3.20763	1.27972e-4	5.89253e-5	0.0102847	0.00630001
chr2	32458623	32458722	731818	0	+	0.272727	[0,0.28]	chr2	84399	43	INTRON	INTRON	BIRC6	ENSG00000115760.15	ENST00000421745.7:ENST00000648282.1	protein_coding	protein_coding	protein_coding	protein_coding	7	238	2	2.86144	3.18581	3.51018	6.46415e-4	2.72495e-5	0.0232455	0.00412617
chr12	14374206	14374306	5082803	0	+	0.42	(0.408,0.44]	chr12	480396	45	INTRON	INTRON	ATF7IP	ENSG00000171681.13	ENST00000539659.5:ENST00000537653.5:ENST00000261168.9:ENST00000538511.5:ENST00000545723.1:ENST00000543189.5:ENST00000536444.5:ENST00000542967.1:ENST00000534828.1:ENST00000535132.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	57	2	2.96007	3.185755	3.41144	0.00753901	0.00178336	0.0773151	0.0379201
chr17	51035086	51035185	6796152	0	-	0.424242	(0.408,0.44]	chr17	670990	30	INTRON	INTRON	SPAG9	ENSG00000008294.22	ENST00000262013.12:ENST00000510283.5:ENST00000505279.5:ENST00000357122.8:ENST00000514613.5:ENST00000505173.5:ENST00000576492.1:ENST00000510855.1:ENST00000511987.5:ENST00000502329.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	57	2	2.96007	3.185755	3.41144	0.00753901	0.00178336	0.0773151	0.0379201
chr12	27794474	27794573	5099603	0	+	0.454545	(0.44,0.476]	chr12	481861	22	INTRON	INTRON	KLHL42	ENSG00000087448.11	ENST00000539176.1:ENST00000381271.7:ENST00000649445.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	28	2	2.5364	3.1854	3.8344	0.041276	0.0309324	0.161534	0.13151
chr16	85199062	85199162	6411819	0	+	0.45	(0.44,0.476]	chr16	615455	138	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	2.5364	3.1854	3.8344	0.041276	0.0309324	0.161534	0.13151
chr22	37619046	37619130	7510056	0	+	0.440476	(0.44,0.476]	chr22	766701	1	INTRON	INTRON	GGA1	ENSG00000100083.19	ENST00000381756.9:ENST00000343632.9:ENST00000405147.7:ENST00000429218.5:ENST00000325180.12:ENST00000439161.5:ENST00000449944.5:ENST00000411501.5:ENST00000453208.5:ENST00000406772.5:ENST00000326597.6:ENST00000413251.5:ENST00000423024.1:ENST00000491295.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	28	2	2.5364	3.1854	3.8344	0.041276	0.0309324	0.161534	0.13151
chr3	136182905	136183005	1824105	0	-	0.46	(0.44,0.476]	chr3	183518	298	INTRON	INTRON	MSL2	ENSG00000174579.4	ENST00000309993.3:ENST00000434835.2:ENST00000481989.1:ENST00000491050.1:ENST00000473093.1	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	2.5364	3.1854	3.8344	0.041276	0.0309324	0.161534	0.13151
chr3	48926903	48926997	1421533	0	+	0.329787	(0.32,0.35]	chr3	149475	3	UTR5	UTR5:EXON_MRNA:SS3_PROX:INTRON	ARIH2	ENSG00000177479.20	ENST00000478224.5:ENST00000430423.5:ENST00000452882.5:ENST00000498314.5:ENST00000474618.5:ENST00000449376.5:ENST00000490095.5:ENST00000356401.9:ENST00000495761.5:ENST00000483333.5:ENST00000482427.5:ENST00000488963.5:ENST00000420814.5:ENST00000486316.5:ENST00000449729.5:ENST00000433170.5:ENST00000474936.6:ENST00000466850.1:ENST00000484999.5:ENST00000470296.5:ENST00000463204.5:ENST00000452385.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	232	2	2.41936	3.18528	3.9512	1.97215e-4	1.50075e-5	0.0122531	0.00311444
chr17	82124605	82124705	6851538	0	-	0.52	(0.515,0.57]	chr17	678956	105	INTRON	INTRON	CCDC57	ENSG00000176155.21	ENST00000694881.1:ENST00000389641.9:ENST00000694882.1:ENST00000665763.1:ENST00000578910.2:ENST00000392345.6:ENST00000583593.2:ENST00000419322.6:ENST00000392346.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	50	2	2.83188	3.1851599999999998	3.53844	0.0108207	7.92613e-4	0.0920575	0.0259663
chr16	4824407	4824506	6438787	0	-	0.525253	(0.515,0.57]	chr16	620189	1	INTRON	INTRON	GLYR1	ENSG00000140632.17	ENST00000321919.14:ENST00000436648.9:ENST00000588732.5:ENST00000589389.5:ENST00000591451.5:ENST00000588297.5:ENST00000587297.1:ENST00000586901.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	30	2	1.86007	3.185035	4.51	0.0526611	0.00809449	0.178401	0.0766625
chr3	14946679	14946775	1619452	0	-	0.447917	(0.44,0.476]	chr3	167396	6	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	FGD5-AS1	ENSG00000225733.7	ENST00000430166.5:ENST00000424349.1:ENST00000655923.1:ENST00000665449.1:ENST00000665738.1:ENST00000661022.1:ENST00000417835.1:ENST00000426200.1:ENST00000440079.1:ENST00000687714.1:ENST00000693748.1	lncRNA	lncRNA	lncRNA	lncRNA	6	111	2	2.3355	3.185035	4.03457	0.00123661	1.03446e-4	0.0326427	0.00915599
chr7	105456799	105456898	3604187	0	-	0.343434	(0.32,0.35]	chr7	336181	4	UTR3	UTR3:EXON_MRNA:INTRON	PUS7	ENSG00000091127.14	ENST00000481939.5:ENST00000469408.6:ENST00000356362.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	66	2	1.43561	3.1849299999999996	4.93425	0.0543363	0.00281048	0.164972	0.0488779
chr3	177179098	177179198	1872265	0	-	0.39	(0.378,0.408]	chr3	187438	78	INTRON	INTRON	TBL1XR1	ENSG00000177565.18	ENST00000457928.7:ENST00000430069.5:ENST00000673974.1:ENST00000352800.10:ENST00000422442.6:ENST00000428970.5:ENST00000424913.5:ENST00000437738.5:ENST00000431421.5:ENST00000635794.1:ENST00000630796.2:ENST00000450267.5:ENST00000630833.2:ENST00000431674.5:ENST00000422066.5:ENST00000443315.5:ENST00000627825.2:ENST00000427349.5:ENST00000413084.5:ENST00000637137.1:ENST00000491623.2:ENST00000637544.1:ENST00000636187.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	169	2	2.95427	3.18486	3.41545	1.58121e-4	1.73194e-5	0.0114628	0.00316166
chr20	21348930	21349019	7248614	0	+	0.438202	(0.408,0.44]	chr20	735966	1	SS3_PROX	SS3_PROX:INTRON	XRN2	ENSG00000088930.8	ENST00000377191.5	protein_coding	protein_coding	protein_coding	protein_coding	2	55	2	3.05705	3.1848099999999997	3.31257	0.00658331	0.00198621	0.0701901	0.0411469
chr4	127942358	127942458	2238335	0	-	0.41	(0.408,0.44]	chr4	219085	2	SS3_PROX	SS3_PROX:INTRON	MFSD8	ENSG00000164073.11	ENST00000296468.8:ENST00000641686.2:ENST00000641186.1:ENST00000641774.1:ENST00000641748.1:ENST00000641508.1:ENST00000641690.1:ENST00000641928.1:ENST00000641464.1:ENST00000641092.1:ENST00000641397.1:ENST00000641393.1:ENST00000641025.1:ENST00000641509.1:ENST00000642034.1:ENST00000641178.1:ENST00000641147.1:ENST00000641753.1:ENST00000641434.1:ENST00000641482.1:ENST00000641133.1:ENST00000515130.6:ENST00000641332.1:ENST00000641870.1:ENST00000641949.1:ENST00000641228.1:ENST00000641590.1:ENST00000641843.1:ENST00000642078.1:ENST00000641882.1:ENST00000641742.1:ENST00000641658.1:ENST00000513559.6:ENST00000509826.2:ENST00000642042.1:ENST00000641340.1:ENST00000641538.1:ENST00000641369.1:ENST00000642121.1:ENST00000641243.1:ENST00000505284.6:ENST00000641134.1:ENST00000641695.1:ENST00000641503.1:ENST00000641743.1:ENST00000641776.1:ENST00000641264.1:ENST00000642143.1:ENST00000508441.2:ENST00000641558.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	55	2	3.05705	3.1848099999999997	3.31257	0.00658331	0.00198621	0.0701901	0.0411469
chr19	1363236	1363333	6994788	0	+	0.371134	(0.35,0.378]	chr19	693066	5	INTRON	INTRON	PWWP3A	ENSG00000160953.17	ENST00000591337.7:ENST00000591433.6:ENST00000591806.6:ENST00000652273.1:ENST00000415183.7:ENST00000587460.6:ENST00000627377.1:ENST00000586996.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	44	2	1.97646	3.1847450000000004	4.39303	0.0237246	0.0193942	0.119831	0.118716
chr2	26350976	26351075	715059	0	+	0.313131	(0.28,0.32]	chr2	82572	42	INTRON	INTRON	SELENOI	ENSG00000138018.19	ENST00000442141.5:ENST00000260585.12:ENST00000447170.1	protein_coding	protein_coding	protein_coding	protein_coding	5	60	2	1.38068	3.1847	4.98872	0.0590236	0.00838468	0.189982	0.0774402
chr1	214621246	214621346	313721	0	+	0.54	(0.515,0.57]	chr1	36097	3	SS5_PROX	SS5_PROX:INTRON	CENPF	ENSG00000117724.14	ENST00000366955.8	protein_coding	protein_coding	protein_coding	protein_coding	4	44	2	1.37301	3.1846799999999997	4.99635	0.0752392	8.06602e-4	0.193891	0.0258804
chr21	46285092	46285186	7471425	0	-	0.457447	(0.44,0.476]	chr21	761706	12	CDS	CDS:EXON_MRNA	MCM3AP	ENSG00000160294.11	ENST00000397708.1:ENST00000291688.6:ENST00000426537.1	protein_coding	protein_coding	protein_coding	protein_coding	2	36	2	1.83899	3.184665	4.53034	0.0589734	0.00672609	0.167915	0.0738715
chr17	59625054	59625153	6641614	0	+	0.30303	(0.28,0.32]	chr17	648527	45	INTRON	INTRON	CLTC	ENSG00000141367.12	ENST00000621829.4:ENST00000393043.5:ENST00000269122.8:ENST00000580081.1:ENST00000579456.5:ENST00000584313.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	126	2	2.76883	3.1845999999999997	3.60037	0.00414663	5.74264e-5	0.0568239	0.00619941
chr10	70855941	70856038	4448650	0	+	0.381443	(0.378,0.408]	chr10	410510	7	INTRON	INTRON	SGPL1	ENSG00000166224.17	ENST00000373202.8:ENST00000299297.8:ENST00000409118.2	protein_coding	protein_coding	protein_coding	protein_coding	1	25	2	2.26252	3.184565	4.10661	0.056222	0.0399023	0.18407	0.143072
chr15	23038997	23039097	6120727	0	-	0.4	(0.378,0.408]	chr15	582817	2	SS5_PROX	SS5_PROX:INTRON	TUBGCP5	ENSG00000275835.5	ENST00000614508.4:ENST00000615383.5:ENST00000620435.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	25	2	2.26252	3.184565	4.10661	0.056222	0.0399023	0.18407	0.143072
chr16	22467688	22467788	6322251	0	+	0.38	(0.378,0.408]	chr16	605343	4	SS5_PROX	SS5_PROX:INTRON	SMG1P1	ENSG00000237296.10	ENST00000381231.5:ENST00000309865.11:ENST00000687936.1:ENST00000691423.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	1	25	2	2.26252	3.184565	4.10661	0.056222	0.0399023	0.18407	0.143072
chr16	47672302	47672401	6345444	0	+	0.393939	(0.378,0.408]	chr16	609021	25	INTRON	INTRON	PHKB	ENSG00000102893.17	ENST00000566044.5:ENST00000299167.12:ENST00000696809.1:ENST00000323584.10:ENST00000566275.2:ENST00000566319.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	25	2	2.26252	3.184565	4.10661	0.056222	0.0399023	0.18407	0.143072
chr16	81509990	81510090	6405651	0	+	0.4	(0.378,0.408]	chr16	615031	141	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6	protein_coding	protein_coding	protein_coding	protein_coding	1	25	2	2.26252	3.184565	4.10661	0.056222	0.0399023	0.18407	0.143072
chr2	187534359	187534458	1289324	0	-	0.383838	(0.378,0.408]	chr2	135621	45	INTRON	INTRON	TFPI	ENSG00000003436.16	ENST00000233156.9:ENST00000409676.5:ENST00000339091.8:ENST00000421427.5:ENST00000437725.5:ENST00000453013.5:ENST00000417013.5:ENST00000420747.1	protein_coding	protein_coding	protein_coding	protein_coding	1	25	2	2.26252	3.184565	4.10661	0.056222	0.0399023	0.18407	0.143072
chr2	229876289	229876389	1341204	0	-	0.38	(0.378,0.408]	chr2	140449	154	INTRON	INTRON	TRIP12	ENSG00000153827.14	ENST00000675453.1:ENST00000675903.1:ENST00000283943.9:ENST00000675423.1:ENST00000389044.8:ENST00000389045.7:ENST00000479037.5:ENST00000409677.5:ENST00000435716.5:ENST00000428959.5:ENST00000430954.5:ENST00000343290.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	25	2	2.26252	3.184565	4.10661	0.056222	0.0399023	0.18407	0.143072
chr20	63934146	63934245	7301359	0	+	0.393939	(0.378,0.408]	chr20	743167	27	UTR3	UTR3:EXON_MRNA	DNAJC5	ENSG00000101152.11	ENST00000360864.9:ENST00000470551.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	25	2	2.26252	3.184565	4.10661	0.056222	0.0399023	0.18407	0.143072
chr3	49754618	49754718	1694564	0	-	0.4	(0.378,0.408]	chr3	173818	58	INTRON	INTRON	IP6K1	ENSG00000176095.12	ENST00000321599.9:ENST00000395238.5:ENST00000613416.4:ENST00000468463.5:ENST00000460540.1:ENST00000498149.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	25	2	2.26252	3.184565	4.10661	0.056222	0.0399023	0.18407	0.143072
chr4	78837285	78837385	1981998	0	+	0.4	(0.378,0.408]	chr4	198479	32	INTRON	INTRON	BMP2K	ENSG00000138756.19	ENST00000389010.7:ENST00000502613.3:ENST00000502871.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	25	2	2.26252	3.184565	4.10661	0.056222	0.0399023	0.18407	0.143072
chr5	154231476	154231576	2524189	0	+	0.39	(0.378,0.408]	chr5	241463	111	INTRON	INTRON	GALNT10	ENSG00000164574.16	ENST00000425427.6:ENST00000297107.11:ENST00000520647.5:ENST00000377661.2:ENST00000521781.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	25	2	2.26252	3.184565	4.10661	0.056222	0.0399023	0.18407	0.143072
chr6	159788609	159788695	3254696	0	-	0.383721	(0.378,0.408]	chr6	302552	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	TCP1	ENSG00000120438.12	ENST00000321394.12:ENST00000544255.5:ENST00000420894.6:ENST00000392168.6:ENST00000539756.1:ENST00000543532.5:ENST00000538530.5:ENST00000538128.5:ENST00000543517.5:ENST00000537390.5:ENST00000536394.1:ENST00000536607.1:ENST00000546023.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	25	2	2.26252	3.184565	4.10661	0.056222	0.0399023	0.18407	0.143072
chr9	78020316	78020416	4271833	0	-	0.38	(0.378,0.408]	chr9	392880	976	INTRON	INTRON	GNAQ	ENSG00000156052.11	ENST00000286548.9:ENST00000411677.1	protein_coding	protein_coding	protein_coding	protein_coding	1	25	2	2.26252	3.184565	4.10661	0.056222	0.0399023	0.18407	0.143072
chr9	96596319	96596419	4296462	0	-	0.39	(0.378,0.408]	chr9	395079	292	INTRON	INTRON	CDC14B	ENSG00000081377.17	ENST00000474602.5:ENST00000412285.6:ENST00000375241.6:ENST00000375240.7:ENST00000463569.5:ENST00000415608.1:ENST00000496750.5:ENST00000463547.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	25	2	2.26252	3.184565	4.10661	0.056222	0.0399023	0.18407	0.143072
chr9	124937578	124937677	4349894	0	-	0.393939	(0.378,0.408]	chr9	399402	58	INTRON	INTRON	GOLGA1	ENSG00000136935.14	ENST00000373555.9:ENST00000421514.1	protein_coding	protein_coding	protein_coding	protein_coding	1	25	2	2.26252	3.184565	4.10661	0.056222	0.0399023	0.18407	0.143072
chr1	111159453	111159527	183922	0	+	0.418919	(0.408,0.44]	chr1	20425	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CEPT1	ENSG00000134255.15	ENST00000545121.5:ENST00000498239.5:ENST00000480324.5:ENST00000476865.5:ENST00000357172.9:ENST00000460443.5:ENST00000478042.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	33	2	1.85305	3.184545	4.51604	0.0543543	0.0137419	0.182243	0.0949306
chr2	148005735	148005835	1242627	0	-	0.43	(0.408,0.44]	chr2	131884	233	INTRON	INTRON	ORC4	ENSG00000115947.14	ENST00000392857.10:ENST00000264169.6:ENST00000536575.5:ENST00000535373.5:ENST00000540442.5:ENST00000461711.5:ENST00000490200.5:ENST00000416719.5:ENST00000457954.5:ENST00000440042.1:ENST00000495601.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	33	2	1.85305	3.184545	4.51604	0.0543543	0.0137419	0.182243	0.0949306
chr4	128101795	128101893	2043007	0	+	0.428571	(0.408,0.44]	chr4	202884	31	INTRON	INTRON	LARP1B	ENSG00000138709.19	ENST00000512292.5:ENST00000326639.11:ENST00000508819.5:ENST00000394288.7:ENST00000432347.6:ENST00000649983.1:ENST00000650359.1:ENST00000648358.1:ENST00000507377.1	protein_coding	protein_coding	protein_coding	protein_coding	2	33	2	1.85305	3.184545	4.51604	0.0543543	0.0137419	0.182243	0.0949306
chr11	12970787	12970886	4915880	0	-	0.494949	(0.476,0.515]	chr11	460662	52	INTRON	INTRON	LINC00958	ENSG00000251381.8	ENST00000658243.1:ENST00000527945.2	lncRNA	lncRNA	lncRNA	lncRNA	2	33	2	1.8388	3.184515	4.53023	0.0564473	0.0119748	0.184423	0.0899583
chr4	150871018	150871106	2270309	0	-	0.477273	(0.476,0.515]	chr4	220829	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	LRBA	ENSG00000198589.14	ENST00000357115.9:ENST00000651943.2:ENST00000510413.5:ENST00000651695.1:ENST00000651035.1:ENST00000507224.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	33	2	1.8388	3.184515	4.53023	0.0564473	0.0119748	0.184423	0.0899583
chr5	32589380	32589479	2334790	0	+	0.30303	(0.28,0.32]	chr5	225358	4	INTRON	INTRON	SUB1	ENSG00000113387.12	ENST00000506237.5:ENST00000512913.5:ENST00000513013.5:ENST00000265073.9:ENST00000511615.5:ENST00000515355.5:ENST00000502897.5:ENST00000510442.1:ENST00000504789.5:ENST00000511988.5:ENST00000504016.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	43	2	1.76293	3.1845149999999998	4.6061	0.0766478	0.0102724	0.196164	0.089002
chr9	33022238	33022337	4242990	0	-	0.282828	(0.28,0.32]	chr9	390013	17	INTRON	INTRON	APTX	ENSG00000137074.20	ENST00000673360.1:ENST00000436040.7:ENST00000673487.1:ENST00000467331.6:ENST00000482687.6:ENST00000485479.6:ENST00000460940.6:ENST00000673248.1:ENST00000495360.6:ENST00000468275.6:ENST00000473270.1:ENST00000489583.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	43	2	1.76293	3.1845149999999998	4.6061	0.0766478	0.0102724	0.196164	0.089002
chr18	807519	807619	6940659	0	-	0.42	(0.408,0.44]	chr18	686527	95	INTRON	INTRON	YES1	ENSG00000176105.14	ENST00000584307.5:ENST00000314574.5:ENST00000577611.1:ENST00000581960.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	88	2	2.64127	3.18444	3.72761	0.00125199	4.662e-4	0.0328543	0.0199613
chr1	235209478	235209578	662660	0	-	0.17	[0,0.28]	chr1	78465	130	INTRON	INTRON	ARID4B	ENSG00000054267.22	ENST00000349213.7:ENST00000366603.6:ENST00000264183.9:ENST00000421364.5:ENST00000491632.5:ENST00000444620.2:ENST00000471257.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	107	2	3.1177	3.1842800000000002	3.25086	0.00849154	4.54073e-4	0.0778788	0.0192381
chr1	213054008	213054108	310727	0	+	0.52	(0.515,0.57]	chr1	35901	21	INTRON	INTRON	RPS6KC1	ENSG00000136643.12	ENST00000615329.4:ENST00000543354.5:ENST00000614059.4:ENST00000543470.5:ENST00000366960.8:ENST00000366959.4	protein_coding	protein_coding	protein_coding	protein_coding	3	63	2	2.96467	3.184275	3.40388	0.00142538	8.94279e-4	0.0340865	0.0273458
chr10	7321046	7321146	4552033	0	-	0.36	(0.35,0.378]	chr10	420230	347	INTRON	INTRON	SFMBT2	ENSG00000198879.13	ENST00000397167.6:ENST00000361972.8:ENST00000684547.1:ENST00000683762.1:ENST00000673876.1:ENST00000682896.1:ENST00000379713.8:ENST00000682101.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	35	2	1.9755	3.1842650000000003	4.39303	0.0398617	0.0237246	0.161534	0.118716
chr8	99061036	99061136	3811737	0	+	0.37	(0.35,0.378]	chr8	353071	46	INTRON	INTRON	VPS13B	ENSG00000132549.20	ENST00000496144.5:ENST00000683334.1:ENST00000682853.1:ENST00000357162.7:ENST00000358544.7:ENST00000683619.1:ENST00000441350.2:ENST00000684269.1:ENST00000682806.1:ENST00000683869.1:ENST00000682153.1:ENST00000682358.1:ENST00000682145.1:ENST00000355155.6:ENST00000682234.1:ENST00000683486.1:ENST00000684308.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	35	2	1.9755	3.1842650000000003	4.39303	0.0398617	0.0237246	0.161534	0.118716
chr3	180945176	180945276	1568935	0	+	0.34	(0.32,0.35]	chr3	162382	96	INTRON	INTRON	FXR1	ENSG00000114416.18	ENST00000469882.5:ENST00000484790.5:ENST00000465551.5:ENST00000305586.11:ENST00000475315.5:ENST00000357559.9:ENST00000468861.5:ENST00000491062.5:ENST00000479176.5:ENST00000445140.6:ENST00000472339.5:ENST00000484958.5:ENST00000480918.5:ENST00000484042.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	38	2	2.19668	3.1842449999999998	4.17181	0.04531	0.021398	0.149888	0.123719
chr15	66500748	66500842	6210616	0	-	0.404255	(0.378,0.408]	chr15	592722	5	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPL4	ENSG00000174444.15	ENST00000307961.11:ENST00000567229.5:ENST00000568588.5:ENST00000561775.5:ENST00000569696.5:ENST00000564744.1:ENST00000564647.5:ENST00000563473.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	10	241	2	3.05029	3.18423	3.31817	3.18266e-5	1.42331e-5	0.00450397	0.0030101
chr1	207347346	207347446	303533	0	+	0.55	(0.515,0.57]	chr1	34928	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	CD55	ENSG00000196352.18	ENST00000695822.1:ENST00000695823.1:ENST00000695826.1:ENST00000695825.1:ENST00000695827.1:ENST00000645323.1:ENST00000391921.9:ENST00000367064.9:ENST00000314754.12:ENST00000644836.1:ENST00000476590.1:ENST00000465534.5:ENST00000618707.2:ENST00000635614.2:ENST00000695831.1:ENST00000634386.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	84	2	3.02819	3.184135	3.34008	7.81057e-4	1.23135e-4	0.0257168	0.00949625
chr20	31773873	31773973	7254012	0	+	0.45	(0.44,0.476]	chr20	736763	18	INTRON	INTRON	TPX2	ENSG00000088325.16	ENST00000340513.4:ENST00000300403.11	protein_coding	protein_coding	protein_coding	protein_coding	2	55	2	2.86231	3.184075	3.50584	0.012214	8.66138e-4	0.0910127	0.0266729
chr3	149054605	149054703	1840670	0	-	0.306122	(0.28,0.32]	chr3	185131	21	INTRON	INTRON	HLTF	ENSG00000071794.16	ENST00000310053.10:ENST00000465259.5:ENST00000392912.6:ENST00000494055.5:ENST00000493881.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	208	2	2.72218	3.184075	3.64597	1.34072e-4	1.00082e-4	0.00998237	0.00904854
chr9	128461373	128461470	4204958	0	+	0.463918	(0.44,0.476]	chr9	384456	1	SS5_PROX	SS5_PROX:INTRON	ODF2	ENSG00000136811.17	ENST00000497812.6:ENST00000393533.6:ENST00000351030.8:ENST00000372814.7:ENST00000444119.7:ENST00000393527.8:ENST00000469582.6:ENST00000604420.5:ENST00000448249.8:ENST00000372807.10:ENST00000688016.1:ENST00000686232.1:ENST00000434106.7:ENST00000546203.5:ENST00000446274.5:ENST00000421776.6:ENST00000432065.6:ENST00000372791.7:ENST00000470061.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	55	2	2.86231	3.184075	3.50584	0.012214	8.66138e-4	0.0910127	0.0266729
chr1	110347887	110347987	182429	0	+	0.38	(0.378,0.408]	chr1	20249	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	LAMTOR5-AS1	ENSG00000224699.10	ENST00000626572.2	lncRNA	lncRNA	lncRNA	lncRNA	2	37	2	1.76032	3.184015	4.60771	0.0721577	0.00567576	0.187433	0.0678837
chr12	112037098	112037198	5414678	0	-	0.38	(0.378,0.408]	chr12	517122	1	PRIMIRNA	PRIMIRNA:INTRON	NAA25:MIR3657	ENSG00000111300.10:ENSG00000266370.1	ENST00000261745.9:ENST00000552527.5:ENST00000549711.5:ENST00000584818.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:primary_miRNA	2	37	2	1.76032	3.184015	4.60771	0.0721577	0.00567576	0.187433	0.0678837
chr5	455904	456001	2313196	0	+	0.381443	(0.378,0.408]	chr5	223771	15	INTRON	INTRON	EXOC3	ENSG00000180104.16	ENST00000512944.6:ENST00000515601.6:ENST00000315013.9:ENST00000503889.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	37	2	1.76032	3.184015	4.60771	0.0721577	0.00567576	0.187433	0.0678837
chr2	156218496	156218595	1248615	0	-	0.353535	(0.35,0.378]	chr2	132421	127	INTRON	INTRON	LINC01876	ENSG00000226383.7	ENST00000635799.1:ENST00000662073.1:ENST00000659502.1:ENST00000428651.2:ENST00000661513.1:ENST00000657334.1:ENST00000638047.1:ENST00000637554.1:ENST00000636956.1:ENST00000637665.1:ENST00000637476.1:ENST00000637324.1	lncRNA	lncRNA	lncRNA	lncRNA	2	36	2	2.17079	3.183945	4.1971	0.0367539	0.0225978	0.138959	0.124921
chr7	23420020	23420120	3503161	0	-	0.37	(0.35,0.378]	chr7	326906	8	INTRON	INTRON	IGF2BP3	ENSG00000136231.14	ENST00000258729.8:ENST00000421467.6:ENST00000468263.5:ENST00000479504.5:ENST00000466809.6:ENST00000491719.5:ENST00000465058.5:ENST00000469723.5:ENST00000476938.5:ENST00000468005.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	36	2	2.17079	3.183945	4.1971	0.0367539	0.0225978	0.138959	0.124921
chr19	9661772	9661872	7133371	0	-	0.42	(0.408,0.44]	chr19	718911	5	INTRON	INTRON	ZNF562	ENSG00000171466.10	ENST00000453372.7:ENST00000293648.8:ENST00000590155.5:ENST00000585688.5:ENST00000587392.5:ENST00000588653.5:ENST00000589542.1:ENST00000585350.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	36	2	1.74775	3.18392	4.62009	0.0735403	0.00504155	0.190238	0.0646039
chr1	6186816	6186916	366070	0	-	0.36	(0.35,0.378]	chr1	43016	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	RPL22	ENSG00000116251.11	ENST00000234875.9:ENST00000480661.1:ENST00000497965.5:ENST00000471204.5:ENST00000465387.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	26	2	2.39746	3.18389	3.97032	0.0578667	0.041314	0.167723	0.161534
chr15	63750291	63750389	6200057	0	-	0.357143	(0.35,0.378]	chr15	591393	1	INTRON	INTRON	HERC1	ENSG00000103657.14	ENST00000443617.7:ENST00000561400.1	protein_coding	protein_coding	protein_coding	protein_coding	1	26	2	2.39746	3.18389	3.97032	0.0578667	0.041314	0.167723	0.161534
chr17	21019585	21019685	6742930	0	-	0.37	(0.35,0.378]	chr17	662052	4	SS3_PROX	SS3_PROX:INTRON	USP22	ENSG00000124422.12	ENST00000261497.9:ENST00000537526.6:ENST00000455117.6:ENST00000579645.5:ENST00000578446.1:ENST00000476111.5:ENST00000584538.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	26	2	2.39746	3.18389	3.97032	0.0578667	0.041314	0.167723	0.161534
chr2	30148244	30148343	725752	0	+	0.373737	(0.35,0.378]	chr2	83899	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	YPEL5	ENSG00000119801.13	ENST00000379520.7:ENST00000379519.7:ENST00000490211.6:ENST00000261353.9:ENST00000402003.7:ENST00000402708.5:ENST00000482474.1:ENST00000470120.5:ENST00000492439.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	26	2	2.39746	3.18389	3.97032	0.0578667	0.041314	0.167723	0.161534
chr2	152714729	152714829	1246497	0	-	0.37	(0.35,0.378]	chr2	132365	1	SS3_PROX	SS3_PROX:INTRON	PRPF40A	ENSG00000196504.20	ENST00000410080.8:ENST00000545856.8:ENST00000696382.1:ENST00000696381.1:ENST00000354363.11:ENST00000493468.7:ENST00000448428.2:ENST00000489741.1:ENST00000450303.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	26	2	2.39746	3.18389	3.97032	0.0578667	0.041314	0.167723	0.161534
chr21	18588168	18588268	7433683	0	-	0.36	(0.35,0.378]	chr21	758104	244	INTRON	INTRON	MIR548XHG	ENSG00000224141.6	ENST00000671206.1:ENST00000437492.6:ENST00000355189.7	lncRNA	lncRNA	lncRNA	lncRNA	1	26	2	2.39746	3.18389	3.97032	0.0578667	0.041314	0.167723	0.161534
chr7	50765101	50765200	3532397	0	-	0.373737	(0.35,0.378]	chr7	329523	27	INTRON	INTRON	GRB10	ENSG00000106070.20	ENST00000335866.7:ENST00000401949.6:ENST00000644769.1:ENST00000644879.1:ENST00000402497.6:ENST00000407526.6:ENST00000645075.2:ENST00000439044.7:ENST00000644716.1:ENST00000483819.1:ENST00000470992.5:ENST00000492265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	26	2	2.39746	3.18389	3.97032	0.0578667	0.041314	0.167723	0.161534
chrX	107154246	107154346	7859970	0	-	0.33	(0.32,0.35]	chrX	801292	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	NUP62CL	ENSG00000198088.10	ENST00000372466.8:ENST00000484614.5:ENST00000421752.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	39	2	2.30476	3.183875	4.06299	0.0559439	0.0151817	0.165463	0.108535
chr4	897932	897975	2093939	0	-	0.627907	(0.57,1]	chr4	206950	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	GAK	ENSG00000178950.18	ENST00000314167.9:ENST00000511163.5:ENST00000505819.5:ENST00000507580.5:ENST00000502656.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	41	2	3.04906	3.1838249999999997	3.31859	0.00137292	4.97245e-4	0.0340241	0.0206993
chr19	34453666	34453759	7053382	0	+	0.537634	(0.515,0.57]	chr19	703543	12	INTRON	INTRON	UBA2	ENSG00000126261.13	ENST00000586313.1:ENST00000246548.9:ENST00000439527.6:ENST00000591016.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	175	2	3.04003	3.18377	3.32751	1.4675e-5	8.79431e-6	0.00286875	0.00228251
chr7	106278673	106278773	3608548	0	-	0.31	(0.28,0.32]	chr7	336542	11	INTRON	INTRON	NAMPT	ENSG00000105835.13	ENST00000681491.1:ENST00000222553.8:ENST00000681494.1:ENST00000680708.1:ENST00000681653.1:ENST00000681391.1:ENST00000680991.1:ENST00000680077.1:ENST00000681456.1:ENST00000680675.1:ENST00000681550.1:ENST00000680864.1:ENST00000680584.1:ENST00000680669.1:ENST00000424768.2:ENST00000681255.1:ENST00000679873.1:ENST00000679643.1:ENST00000681878.1:ENST00000489732.2:ENST00000679951.1:ENST00000680823.1:ENST00000680468.1:ENST00000681936.1:ENST00000680152.1:ENST00000681887.1:ENST00000680129.1:ENST00000680786.1:ENST00000681223.1:ENST00000679717.1:ENST00000354289.9:ENST00000491027.6:ENST00000393618.6:ENST00000489358.5:ENST00000441045.6:ENST00000417537.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	48	2	1.85772	3.183765	4.50981	0.0300199	0.0275554	0.142135	0.123904
chr7	149552206	149552300	3671895	0	-	0.478723	(0.476,0.515]	chr7	340815	4	SS3_PROX	SS3_PROX:INTRON	ZNF767P	ENSG00000133624.14	ENST00000463567.5:ENST00000472212.5:ENST00000684939.1:ENST00000690388.1:ENST00000486492.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	5	117	2	2.82251	3.1836149999999996	3.54472	6.78359e-4	4.7567e-5	0.023827	0.00563122
chr2	70247307	70247407	1152456	0	-	0.29	(0.28,0.32]	chr2	123109	108	INTRON	INTRON	C2orf42:TIA1	ENSG00000115998.8:ENSG00000116001.17	ENST00000470096.1:ENST00000415783.6:ENST00000433529.7:ENST00000282574.8:ENST00000445587.5:ENST00000416149.6:ENST00000474809.6:ENST00000477044.6:ENST00000496452.5:ENST00000481650.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	125	2	2.84714	3.1835199999999997	3.5199	0.00310758	8.86821e-5	0.0498063	0.00792076
chr7	139372156	139372253	3437712	0	+	0.309278	(0.28,0.32]	chr7	320325	3	INTRON	INTRON	LUC7L2:FMC1-LUC7L2	ENSG00000146963.18:ENSG00000269955.2	ENST00000541170.7:ENST00000541515.3:ENST00000608368.5:ENST00000619796.4:ENST00000354926.9:ENST00000435096.1:ENST00000456182.5:ENST00000263545.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	151	2	2.56602	3.18351	3.801	0.00326427	1.85491e-5	0.0508595	0.00329848
chr8	15549148	15549248	3704225	0	+	0.39	(0.378,0.408]	chr8	343552	82	INTRON	INTRON	TUSC3	ENSG00000104723.21	ENST00000503191.5:ENST00000382020.8:ENST00000515859.5:ENST00000506802.5:ENST00000503731.6:ENST00000510836.5:ENST00000509380.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	76	2	2.78867	3.18344	3.57821	0.00226991	9.60401e-4	0.0437013	0.0282401
chr1	235196814	235196914	662533	0	-	0.36	(0.35,0.378]	chr1	78465	3	INTRON	INTRON	ARID4B	ENSG00000054267.22	ENST00000349213.7:ENST00000366603.6:ENST00000264183.9:ENST00000421364.5:ENST00000491632.5:ENST00000444620.2:ENST00000471257.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	97	2	2.49218	3.18339	3.8746	0.00348124	1.66811e-4	0.0521496	0.0111796
chr12	69272578	69272677	5163848	0	+	0.30303	(0.28,0.32]	chr12	489054	32	UTR3	UTR3:EXON_MRNA	CPSF6	ENSG00000111605.18	ENST00000435070.7:ENST00000650046.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	172	2	2.54882	3.18337	3.81792	0.00175276	1.68118e-5	0.0376491	0.00310245
chr7	67259250	67259349	3541425	0	-	0.515152	(0.476,0.515]	chr7	330356	36	INTRON	INTRON	PMS2P4	ENSG00000067601.9	ENST00000685171.1:ENST00000688358.1:ENST00000692496.1:ENST00000685583.1:ENST00000688710.1:ENST00000684859.1:ENST00000685318.1:ENST00000691713.1:ENST00000686389.1:ENST00000690253.1:ENST00000688815.1:ENST00000692171.1:ENST00000692360.1:ENST00000689281.1:ENST00000690241.1:ENST00000689629.1:ENST00000689043.1:ENST00000688809.1:ENST00000687432.1:ENST00000687680.1:ENST00000686900.1:ENST00000691782.1:ENST00000693356.1:ENST00000691384.1:ENST00000690440.1:ENST00000686719.1:ENST00000686561.1:ENST00000688238.1:ENST00000687826.1:ENST00000689908.1:ENST00000689385.1:ENST00000689855.1:ENST00000691806.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	3	73	2	2.62236	3.183345	3.74433	0.00517	2.85053e-4	0.0631506	0.0150568
chr21	21156967	21157067	7380579	0	+	0.35	(0.32,0.35]	chr21	752602	1580	INTRON	INTRON	NCAM2	ENSG00000154654.15	ENST00000400546.6	protein_coding	protein_coding	protein_coding	protein_coding	3	86	2	2.67068	3.18325	3.69582	0.00406276	7.3931e-4	0.0578984	0.0249744
chr2	26373366	26373453	715288	0	+	0.494253	(0.476,0.515]	chr2	82592	1	CDS	CDS:EXON_MRNA:INTRON	SELENOI	ENSG00000138018.19	ENST00000442141.5:ENST00000260585.12:ENST00000447170.1	protein_coding	protein_coding	protein_coding	protein_coding	4	87	2	2.69104	3.18324	3.67544	9.94264e-4	5.51624e-4	0.0290397	0.0216014
chr2	222626953	222627052	1332819	0	-	0.545455	(0.515,0.57]	chr2	139860	18	INTRON	INTRON	FARSB	ENSG00000116120.11	ENST00000281828.8	protein_coding	protein_coding	protein_coding	protein_coding	3	64	2	2.62817	3.1831300000000002	3.73809	0.004048	3.11298e-4	0.0578376	0.0162055
chr12	46268125	46268225	5316519	0	-	0.6	(0.57,1]	chr12	505754	2	SS5_PROX	SS5_PROX:INTRON	SLC38A1	ENSG00000111371.16	ENST00000398637.10:ENST00000439706.5:ENST00000549049.5:ENST00000546893.5:ENST00000549633.5:ENST00000551506.1:ENST00000550173.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	40	2	2.73499	3.183115	3.63124	0.00237434	2.87208e-4	0.0438057	0.0150568
chr15	41671254	41671353	6006964	0	+	0.272727	[0,0.28]	chr15	571632	9	INTRON	INTRON	MGA	ENSG00000174197.18	ENST00000566718.6:ENST00000545763.6:ENST00000570161.6:ENST00000563576.6:ENST00000566586.6:ENST00000219905.13:ENST00000682463.1:ENST00000561532.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	42	2	1.8986	3.18293	4.46726	0.0531512	0.0427997	0.179787	0.148082
chr5	55950864	55950963	2623152	0	-	0.525253	(0.515,0.57]	chr5	249208	15	INTRON	INTRON	IL6ST	ENSG00000134352.20	ENST00000381298.7:ENST00000336909.9:ENST00000381287.8:ENST00000651614.1:ENST00000503773.6:ENST00000502326.7:ENST00000381294.7:ENST00000583149.1:ENST00000381293.6:ENST00000381286.7:ENST00000522633.2:ENST00000423954.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	48	2	2.83501	3.18293	3.53085	0.0117686	6.59951e-4	0.0894475	0.0232396
chr7	6056083	6056181	3476220	0	-	0.520408	(0.515,0.57]	chr7	325245	10	INTRON	INTRON	EIF2AK1	ENSG00000086232.13	ENST00000199389.11:ENST00000431744.5:ENST00000463213.5:ENST00000446699.1:ENST00000461493.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	48	2	2.83501	3.18293	3.53085	0.0117686	6.59951e-4	0.0894475	0.0232396
chr1	110049755	110049853	182074	0	+	0.469388	(0.44,0.476]	chr1	20193	3	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	STRIP1	ENSG00000143093.15	ENST00000369796.5:ENST00000369795.8:ENST00000485775.5:ENST00000473429.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	74	2	2.42996	3.182905	3.93585	0.0104804	1.04728e-4	0.0855777	0.00863456
chr4	65442	65542	1905411	0	+	0.28	[0,0.28]	chr4	191003	49	INTRON	INTRON	ZNF595	ENSG00000272602.6	ENST00000608255.2:ENST00000609518.5:ENST00000509152.3:ENST00000610261.6	protein_coding	protein_coding	protein_coding	protein_coding	7	222	2	2.49162	3.182805	3.87399	9.9577e-4	5.59241e-5	0.0290732	0.0065474
chr7	65056020	65056120	3321552	0	+	0.33	(0.32,0.35]	chr7	308810	171	INTRON	INTRON	CCT6P3	ENSG00000234585.6	ENST00000419314.5:ENST00000426828.5	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript	3	87	2	3.07935	3.1827550000000002	3.28616	0.00724137	2.51931e-4	0.0729826	0.0141209
chr6	26890794	26890894	3071612	0	-	0.55	(0.515,0.57]	chr6	285551	12	INTRON	INTRON	GUSBP2	ENSG00000241549.8	ENST00000479900.5:ENST00000463434.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	5	86	2	2.48529	3.1826600000000003	3.88003	9.88223e-4	1.52864e-4	0.0289028	0.0112857
chr3	42620226	42620316	1406172	0	+	0.311111	(0.28,0.32]	chr3	147669	3	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	NKTR	ENSG00000114857.19	ENST00000468735.6:ENST00000487466.5:ENST00000429888.5:ENST00000232978.13:ENST00000442970.5:ENST00000478488.1:ENST00000465584.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	17	448	2	2.88018	3.182625	3.48507	8.83592e-6	6.72361e-6	0.00228471	0.00183734
chr6	31793420	31793520	3079807	0	-	0.55	(0.515,0.57]	chr6	287242	3	SS3_PROX	SS3_PROX:INTRON	VARS1	ENSG00000204394.13	ENST00000375663.8:ENST00000440048.1	protein_coding	protein_coding	protein_coding	protein_coding	2	48	2	3.05839	3.1825200000000002	3.30665	0.00485936	0.00213226	0.0640618	0.041756
chr15	58915158	58915256	6193943	0	-	0.357143	(0.35,0.378]	chr15	590101	10	INTRON	INTRON	SLTM	ENSG00000137776.17	ENST00000380516.7:ENST00000492526.5:ENST00000557924.5:ENST00000558756.5:ENST00000249736.11:ENST00000559305.5:ENST00000480144.5:ENST00000628684.2:ENST00000559880.5:ENST00000558486.5:ENST00000560682.5:ENST00000557950.5:ENST00000559261.1:ENST00000560012.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	60	2	2.78212	3.18249	3.58286	0.0168532	6.77448e-4	0.103549	0.0236287
chr15	68102877	68102977	6056442	0	+	0.37	(0.35,0.378]	chr15	576567	146	INTRON	INTRON	PIAS1	ENSG00000033800.14	ENST00000564915.5:ENST00000249636.11:ENST00000562190.1:ENST00000545237.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	60	2	2.78212	3.18249	3.58286	0.0168532	6.77448e-4	0.103549	0.0236287
chr1	62446940	62447040	131336	0	+	0.48	(0.476,0.515]	chr1	14921	2	SS3_PROX	SS3_PROX:INTRON	USP1	ENSG00000162607.13	ENST00000371146.5:ENST00000339950.5	protein_coding	protein_coding	protein_coding	protein_coding	2	55	2	3.07422	3.18248	3.29074	0.00506023	0.00272563	0.0646039	0.0467523
chr5	134777809	134777894	2490571	0	+	0.352941	(0.35,0.378]	chr5	237903	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	DDX46	ENSG00000145833.16	ENST00000628477.2:ENST00000452510.7:ENST00000507392.5:ENST00000354283.8:ENST00000509255.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	80	2	2.66568	3.18248	3.69928	0.00496487	3.94786e-4	0.0615009	0.0178567
chrX	134474980	134475080	7724220	0	+	0.45	(0.44,0.476]	chrX	790161	4	SS3_PROX	SS3_PROX:INTRON	HPRT1	ENSG00000165704.15	ENST00000298556.8:ENST00000462974.5:ENST00000475720.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	74	2	3.17572	3.182385	3.18905	0.00427037	3.33091e-4	0.0573912	0.0162254
chr10	109876694	109876793	4696629	0	-	0.444444	(0.44,0.476]	chr10	433046	12	EXON_MRNA	EXON_MRNA:INTRON	XPNPEP1	ENSG00000108039.18	ENST00000322238.12:ENST00000369683.5:ENST00000502935.6:ENST00000488118.6:ENST00000494564.5:ENST00000510988.5:ENST00000472336.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	33	2	1.93084	3.182305	4.43377	0.0443175	0.0162803	0.162302	0.101453
chr4	139354995	139355094	2050238	0	+	0.575758	(0.57,1]	chr4	203340	5	INTRON	INTRON	NAA15	ENSG00000164134.13	ENST00000296543.10:ENST00000398947.1:ENST00000468029.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	62	2	3.01121	3.182245	3.35328	1.18338e-4	8.52328e-5	0.00930884	0.00825602
chr1	8515414	8515514	370747	0	-	0.53	(0.515,0.57]	chr1	43487	36	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000377464.5:ENST00000400907.6:ENST00000656437.1:ENST00000464972.5:ENST00000659924.1:ENST00000480342.5:ENST00000507012.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	30	2	1.94945	3.182215	4.41498	0.0414068	0.0106866	0.161557	0.0861859
chrX	123701287	123701385	7878738	0	-	0.489796	(0.476,0.515]	chrX	802576	32	INTRON	INTRON	THOC2	ENSG00000125676.20	ENST00000245838.13:ENST00000355725.8:ENST00000433883.1:ENST00000419789.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	56	2	2.94692	3.1821	3.41728	0.00794331	0.00165726	0.0797304	0.0369207
chr18	726414	726513	6939832	0	-	0.333333	(0.32,0.35]	chr18	686455	14	INTRON	INTRON	YES1	ENSG00000176105.14	ENST00000584307.5:ENST00000314574.5:ENST00000577961.5	protein_coding	protein_coding	protein_coding	protein_coding	4	102	2	2.53533	3.182085	3.82884	0.00233994	4.19685e-4	0.0442989	0.018968
chr16	90154940	90155039	6424425	0	+	0.373737	(0.35,0.378]	chr16	617209	171	INTRON	INTRON	FAM157C	ENSG00000260528.6	ENST00000568070.1	lncRNA	lncRNA	lncRNA	lncRNA	2	60	2	3.10863	3.18206	3.25549	0.00470896	0.00363602	0.0631419	0.0535085
chr4	99061317	99061416	2003382	0	+	0.363636	(0.35,0.378]	chr4	199888	1	UTR3	UTR3:EXON_MRNA	METAP1	ENSG00000164024.12	ENST00000296411.11:ENST00000510133.5:ENST00000514051.1	protein_coding	protein_coding	protein_coding	protein_coding	3	80	2	3.14947	3.182015	3.21456	0.00420814	4.50721e-4	0.0572185	0.0192381
chr5	95926137	95926237	2682159	0	-	0.45	(0.44,0.476]	chr5	253552	62	INTRON	INTRON	ELL2	ENSG00000118985.16	ENST00000237853.9:ENST00000513343.1:ENST00000506628.1:ENST00000508694.1:ENST00000635633.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	57	2	2.60774	3.1819100000000002	3.75608	0.0255874	2.6487e-4	0.120269	0.0144071
chr16	53060874	53060974	6350777	0	+	0.44	(0.408,0.44]	chr16	609666	54	INTRON	INTRON	CHD9	ENSG00000177200.18	ENST00000447540.6:ENST00000566029.5:ENST00000615216.4:ENST00000561869.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	52	2	1.58026	3.18187	4.78348	0.0444624	0.00290352	0.149888	0.0494641
chr12	68819452	68819552	5163089	0	+	0.4	(0.378,0.408]	chr12	488901	1	SS3_PROX	SS3_PROX:INTRON	MDM2	ENSG00000135679.27	ENST00000258149.11:ENST00000393412.7:ENST00000311420.13:ENST00000393417.8:ENST00000258148.11:ENST00000539479.6:ENST00000523991.5:ENST00000543323.5:ENST00000393415.7:ENST00000393416.7:ENST00000481186.6:ENST00000545204.2:ENST00000544561.6:ENST00000665020.1:ENST00000666617.1:ENST00000671567.1:ENST00000393410.5:ENST00000496959.5:ENST00000299252.8:ENST00000360430.6:ENST00000517852.5:ENST00000546048.5:ENST00000540352.5:ENST00000542502.5:ENST00000537182.5:ENST00000536089.5:ENST00000393413.7:ENST00000350057.9:ENST00000348801.7:ENST00000478070.2:ENST00000471946.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	186	2	3.02338	3.18179	3.3402	5.46679e-5	2.39838e-5	0.00651589	0.00383194
chr19	10671835	10671935	7013394	0	+	0.39	(0.378,0.408]	chr19	696779	3	SS5_PROX	SS5_PROX:INTRON	ILF3	ENSG00000129351.17	ENST00000449870.5:ENST00000587928.5:ENST00000407004.7:ENST00000589998.5:ENST00000589600.5:ENST00000590009.5:ENST00000587505.5:ENST00000589052.5:ENST00000250241.12:ENST00000590261.5:ENST00000588657.5:ENST00000592763.5:ENST00000587840.5:ENST00000589416.5:ENST00000585835.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	213	2	3.08653	3.18173	3.27693	7.70041e-5	4.3412e-6	0.00783983	0.00140234
chr10	92029221	92029318	4489820	0	+	0.329897	(0.32,0.35]	chr10	413484	4	UTR3	UTR3:EXON_MRNA	BTAF1	ENSG00000095564.15	ENST00000265990.12	protein_coding	protein_coding	protein_coding	protein_coding	2	63	2	3.03597	3.181635	3.3273	0.00832487	0.00218894	0.0774402	0.0435144
chr7	157172039	157172139	3454274	0	+	0.58	(0.57,1]	chr7	322918	12	INTRON	INTRON	UBE3C	ENSG00000009335.18	ENST00000611269.4:ENST00000348165.10:ENST00000389103.4	protein_coding	protein_coding	protein_coding	protein_coding	3	40	2	2.66305	3.181455	3.69986	0.00327879	1.9698e-4	0.0509077	0.0122531
chr5	134690838	134690935	2489842	0	+	0.546392	(0.515,0.57]	chr5	237776	22	INTRON	INTRON	SEC24A	ENSG00000113615.13	ENST00000398844.7:ENST00000322887.8:ENST00000513123.1	protein_coding	protein_coding	protein_coding	protein_coding	2	49	2	2.68833	3.1814299999999998	3.67453	0.0184931	3.27949e-4	0.108861	0.0160995
chr7	65004049	65004144	3537673	0	-	0.589474	(0.57,1]	chr7	329952	5	EXON_LNCRNA	EXON_LNCRNA:INTRON	ZNF117:ERV3-1	ENSG00000152926.16:ENSG00000213462.5	ENST00000487644.1:ENST00000394323.3:ENST00000528878.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	56	2	1.94024	3.181395	4.42255	0.0116325	1.693e-6	0.0889284	7.86532e-4
chr12	22669985	22670083	5095201	0	+	0.193878	[0,0.28]	chr12	481262	9	INTRON	INTRON	ETNK1	ENSG00000139163.16	ENST00000671733.1:ENST00000266517.9:ENST00000538218.2:ENST00000673406.1:ENST00000673188.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	126	2	2.58137	3.18134	3.78131	0.00250515	8.78221e-4	0.0464447	0.0271782
chr6	147313189	147313286	2989806	0	+	0.28866000000000003	(0.28,0.32]	chr6	280060	13	INTRON	INTRON	STXBP5	ENSG00000164506.15	ENST00000321680.11:ENST00000367481.7:ENST00000367480.7	protein_coding	protein_coding	protein_coding	protein_coding	4	113	2	2.52281	3.18127	3.83973	0.00385251	2.68965e-4	0.0542786	0.0145349
chr5	149496355	149496454	2750511	0	-	0.383838	(0.378,0.408]	chr5	258992	35	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	CSNK1A1:ENSG00000230551	ENSG00000113712.19:ENSG00000230551.4	ENST00000261798.10:ENST00000377843.8:ENST00000657001.1:ENST00000499521.2:ENST00000515768.6:ENST00000606719.6:ENST00000657462.1:ENST00000661952.1:ENST00000504676.5:ENST00000515435.5:ENST00000662268.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	104	2	2.62441	3.18112	3.73783	5.61983e-4	4.8181e-4	0.0216479	0.0203411
chr12	119780624	119780723	5431290	0	-	0.292929	(0.28,0.32]	chr12	518948	34	INTRON	INTRON	CIT	ENSG00000122966.17	ENST00000392521.7:ENST00000261833.11:ENST00000677438.1:ENST00000677993.1:ENST00000678087.1:ENST00000678652.1:ENST00000676849.1:ENST00000678677.1:ENST00000545913.6:ENST00000679249.1:ENST00000679120.1:ENST00000677812.1:ENST00000677849.1:ENST00000678494.1:ENST00000612548.4:ENST00000392520.2:ENST00000537607.5:ENST00000676833.1:ENST00000536325.1:ENST00000677927.1:ENST00000676563.1:ENST00000678686.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	39	2	2.0243	3.180975	4.33765	0.039714	0.0364967	0.153759	0.143072
chr16	10482645	10482745	6287262	0	+	0.29	(0.28,0.32]	chr16	602048	5	UTR3	UTR3:EXON_MRNA	ATF7IP2	ENSG00000166669.14	ENST00000396559.5:ENST00000396560.6:ENST00000562102.6:ENST00000568027.5:ENST00000324570.9:ENST00000356427.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	39	2	2.0243	3.180975	4.33765	0.039714	0.0364967	0.153759	0.143072
chr2	161322167	161322267	901249	0	+	0.29	(0.28,0.32]	chr2	99704	29	INTRON	INTRON	PSMD14	ENSG00000115233.12	ENST00000409682.8:ENST00000437630.1	protein_coding	protein_coding	protein_coding	protein_coding	2	39	2	2.0243	3.180975	4.33765	0.039714	0.0364967	0.153759	0.143072
chr2	231458810	231458905	1341761	0	-	0.336842	(0.32,0.35]	chr2	140511	3	EXON_MRNA	EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NCL	ENSG00000115053.17	ENST00000322723.9:ENST00000676514.1:ENST00000677703.1:ENST00000678828.1:ENST00000676798.1:ENST00000678246.1:ENST00000679348.1:ENST00000417652.6:ENST00000453992.6:ENST00000678729.1:ENST00000678849.1:ENST00000678405.1:ENST00000676913.1:ENST00000678131.1:ENST00000678364.1:ENST00000676690.1:ENST00000461347.5:ENST00000356936.6:ENST00000454824.6:ENST00000436894.2:ENST00000677786.1:ENST00000494618.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	124	2	1.95408	3.1807000000000003	4.40732	0.0124054	2.66281e-5	0.0973643	0.00428402
chr8	31044672	31044772	3728040	0	+	0.26	[0,0.28]	chr8	346522	103	INTRON	INTRON	WRN	ENSG00000165392.11	ENST00000650667.1:ENST00000298139.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	51	2	1.66929	3.1806	4.69191	0.0537506	0.0269474	0.180803	0.123442
chr8	31056371	31056471	3728157	0	+	0.21	[0,0.28]	chr8	346522	220	INTRON	INTRON	WRN	ENSG00000165392.11	ENST00000650667.1:ENST00000298139.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	51	2	1.66929	3.1806	4.69191	0.0537506	0.0269474	0.180803	0.123442
chr16	16504617	16504717	6310908	0	+	0.48	(0.476,0.515]	chr16	604098	46	INTRON	INTRON	ENSG00000260126	ENSG00000260126.2	ENST00000567465.2	lncRNA	lncRNA	lncRNA	lncRNA	7	153	2	2.79166	3.1805899999999996	3.56952	1.5271e-4	4.10985e-5	0.0112857	0.00519615
chr3	49783371	49783471	1694852	0	-	0.42	(0.408,0.44]	chr3	173818	346	INTRON	INTRON	IP6K1	ENSG00000176095.12	ENST00000321599.9:ENST00000395238.5:ENST00000613416.4:ENST00000468463.5:ENST00000460540.1:ENST00000498149.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	45	2	1.74108	3.180585	4.62009	0.0424099	0.00504155	0.148082	0.0646039
chr11	85977869	85977969	5013902	0	-	0.39	(0.378,0.408]	chr11	472919	4	SS5_PROX	SS5_PROX:INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000530692.5:ENST00000630913.2:ENST00000529760.5:ENST00000528398.5:ENST00000532603.5:ENST00000356360.9:ENST00000529016.5:ENST00000526961.5:ENST00000526907.1:ENST00000530542.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	138	2	2.39979	3.1805649999999996	3.96134	3.45766e-4	1.71065e-4	0.0165457	0.0119955
chr7	139363910	139364010	3437628	0	+	0.26	[0,0.28]	chr7	320318	32	INTRON	INTRON	LUC7L2:FMC1-LUC7L2	ENSG00000146963.18:ENSG00000269955.2	ENST00000541170.7:ENST00000541515.3:ENST00000608368.5:ENST00000619796.4:ENST00000354926.9:ENST00000435096.1:ENST00000456182.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	274	2	2.76665	3.180535	3.59442	9.65957e-4	5.35757e-6	0.0282401	0.00160127
chr5	139313984	139314082	2499586	0	+	0.581633	(0.57,1]	chr5	238922	41	EXON_MRNA	EXON_MRNA:INTRON	MATR3	ENSG00000280987.4:ENSG00000015479.20	ENST00000509990.5:ENST00000506147.5:ENST00000512107.5:ENST00000361059.7:ENST00000394800.6:ENST00000502929.5:ENST00000504203.5:ENST00000509644.5:ENST00000512876.5:ENST00000513678.5:ENST00000513121.1:ENST00000504045.5:ENST00000504311.5:ENST00000502499.5:ENST00000510056.5:ENST00000511249.5:ENST00000394805.8:ENST00000507860.1:ENST00000509918.5:ENST00000503811.5:ENST00000511978.5:ENST00000618441.5:ENST00000514528.5:ENST00000504643.5:ENST00000515833.2:ENST00000514402.1:ENST00000505625.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	26	2	1.98953	3.180445	4.37136	0.0182848	0.00345135	0.115629	0.0517761
chr15	42441087	42441184	6156319	0	-	0.494845	(0.476,0.515]	chr15	585988	9	INTRON	INTRON	ZNF106	ENSG00000103994.18	ENST00000564754.7:ENST00000263805.8:ENST00000565380.5:ENST00000565500.5:ENST00000565611.5	protein_coding	protein_coding	protein_coding	protein_coding	2	36	2	1.92984	3.1803850000000002	4.43093	0.0466474	0.00931369	0.151522	0.0855292
chr21	34097948	34098047	7401338	0	+	0.333333	(0.32,0.35]	chr21	753974	7	UTR3	UTR3:EXON_MRNA:INTRON	MRPS6:SLC5A3	ENSG00000243927.6:ENSG00000198743.7	ENST00000488492.5:ENST00000477091.5:ENST00000399312.3:ENST00000381151.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	116	2	2.50667	3.180355	3.85404	0.00118337	3.75908e-4	0.031662	0.0179813
chr21	33440785	33440884	7440576	0	-	0.545455	(0.515,0.57]	chr21	759319	11	INTRON	INTRON	TMEM50B	ENSG00000142188.17	ENST00000420455.5:ENST00000484377.5:ENST00000470682.5:ENST00000468874.2	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	3	36	2	1.67758	3.1803399999999997	4.6831	0.0471728	0.00471288	0.168737	0.0600108
chr3	48534414	48534514	1688682	0	-	0.33	(0.32,0.35]	chr3	172531	84	INTRON	INTRON	PFKFB4	ENSG00000114268.12	ENST00000232375.8:ENST00000490115.5:ENST00000383734.6:ENST00000416568.5:ENST00000417753.5:ENST00000445633.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	114	2	2.94814	3.18023	3.41232	0.00182605	1.30505e-4	0.0386492	0.00983066
chr5	104255180	104255280	2442967	0	+	0.3	(0.28,0.32]	chr5	234410	1499	INTRON	INTRON	LINC02163	ENSG00000251026.2	ENST00000662211.1:ENST00000666145.1	lncRNA	lncRNA	lncRNA	lncRNA	2	69	2	3.1268	3.180175	3.23355	0.00508956	0.004869	0.0646039	0.0607461
chr7	111538777	111538877	3623879	0	-	0.44	(0.408,0.44]	chr7	337133	58	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000452895.5:ENST00000447215.5:ENST00000492938.1:ENST00000452753.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	74	2	2.72208	3.179965	3.63785	0.00364449	4.70012e-4	0.0535094	0.0196294
chrX	110017650	110017750	7700183	0	+	0.55	(0.515,0.57]	chrX	788130	131	INTRON	INTRON	TMEM164	ENSG00000157600.12	ENST00000372072.7:ENST00000471255.5:ENST00000372073.5:ENST00000372068.7:ENST00000288381.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	37	2	1.94493	3.179955	4.41498	0.0204583	0.0106866	0.122204	0.0861859
chr2	86443834	86443934	822956	0	+	0.38	(0.378,0.408]	chr2	91900	3	SS5_PROX	SS5_PROX:INTRON	KDM3A	ENSG00000115548.17	ENST00000452034.5:ENST00000409556.5:ENST00000312912.10:ENST00000441719.5:ENST00000409064.5:ENST00000427678.1:ENST00000498528.1:ENST00000466058.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	34	2	2.04292	3.1799549999999996	4.31699	0.0326035	0.0250408	0.145164	0.12011
chr6	133955417	133955517	2961778	0	+	0.39	(0.378,0.408]	chr6	278509	16	INTRON	INTRON	TBPL1	ENSG00000028839.10	ENST00000613034.4:ENST00000416965.5:ENST00000457715.1:ENST00000367871.5:ENST00000237264.9:ENST00000367869.1	protein_coding	protein_coding	protein_coding	protein_coding	2	34	2	2.04292	3.1799549999999996	4.31699	0.0326035	0.0250408	0.145164	0.12011
chr3	9808238	9808338	1361084	0	+	0.58	(0.57,1]	chr3	143131	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ARPC4-TTLL3:TTLL3	ENSG00000250151.9:ENSG00000214021.17	ENST00000424442.5:ENST00000418163.5:ENST00000397256.5:ENST00000453882.1:ENST00000414814.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	33	2	2.66801	3.1798450000000003	3.69168	0.0169968	2.1608e-4	0.110899	0.0134537
chr16	89378418	89378518	6542469	0	-	0.3	(0.28,0.32]	chr16	634240	49	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000647238.1:ENST00000644045.1:ENST00000643147.1:ENST00000644139.1:ENST00000568512.6:ENST00000566973.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	150	2	2.81916	3.1798	3.54044	0.00117007	7.94527e-5	0.0312141	0.00742316
chr19	55665630	55665729	7101640	0	+	0.484848	(0.476,0.515]	chr19	712540	15	INTRON	INTRON	U2AF2	ENSG00000063244.13	ENST00000450554.6:ENST00000308924.9:ENST00000592874.1:ENST00000590551.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	97	2	3.03027	3.179795	3.32932	9.53446e-4	1.60666e-4	0.0282335	0.0109124
chr16	15961782	15961881	6307880	0	+	0.434343	(0.408,0.44]	chr16	603510	116	INTRON	INTRON	ABCC1	ENSG00000103222.20	ENST00000574224.2:ENST00000678422.1:ENST00000677164.1:ENST00000399408.7:ENST00000572882.3:ENST00000399410.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	33	2	1.93243	3.17978	4.42713	0.0441194	0.0173083	0.162255	0.104099
chr2	61490976	61491076	1130724	0	-	0.44	(0.408,0.44]	chr2	121548	2	SS3_PROX	SS3_PROX:INTRON	XPO1	ENSG00000082898.19	ENST00000677110.1:ENST00000678113.1:ENST00000676553.1:ENST00000677556.1:ENST00000677814.1:ENST00000676771.1:ENST00000677803.1:ENST00000677239.1:ENST00000678790.1:ENST00000677928.1:ENST00000678182.1:ENST00000677150.1:ENST00000678172.1:ENST00000678360.1:ENST00000678081.1:ENST00000676889.1:ENST00000676783.1:ENST00000679035.1:ENST00000677422.1:ENST00000677417.1:ENST00000677813.1:ENST00000676999.1:ENST00000676667.1:ENST00000678263.1:ENST00000678877.1:ENST00000677933.1:ENST00000680228.1:ENST00000677289.1:ENST00000677190.1:ENST00000481073.6:ENST00000677476.1:ENST00000469337.2:ENST00000401558.7:ENST00000428210.5:ENST00000677290.1:ENST00000677850.1:ENST00000676778.1:ENST00000451765.6:ENST00000676789.1:ENST00000678741.1:ENST00000404992.6:ENST00000406957.5:ENST00000677157.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	33	2	1.93243	3.17978	4.42713	0.0441194	0.0173083	0.162255	0.104099
chr7	102475980	102476080	3588484	0	-	0.44	(0.408,0.44]	chr7	334976	4	SS5_PROX	SS5_PROX:INTRON	POLR2J	ENSG00000005075.16	ENST00000292614.10	protein_coding	protein_coding	protein_coding	protein_coding	2	33	2	1.93243	3.17978	4.42713	0.0441194	0.0173083	0.162255	0.104099
chr7	156685255	156685354	3685911	0	-	0.414141	(0.408,0.44]	chr7	341977	7	INTRON	INTRON	LMBR1	ENSG00000105983.23	ENST00000353442.10:ENST00000448926.5:ENST00000415428.5:ENST00000454132.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	33	2	1.93243	3.17978	4.42713	0.0441194	0.0173083	0.162255	0.104099
chr9	4729492	4729591	4228812	0	-	0.434343	(0.408,0.44]	chr9	388786	65	INTRON	INTRON	AK3	ENSG00000147853.17	ENST00000381809.8:ENST00000611749.4:ENST00000359883.6:ENST00000447596.4	protein_coding	protein_coding	protein_coding	protein_coding	2	33	2	1.93243	3.17978	4.42713	0.0441194	0.0173083	0.162255	0.104099
chr16	71747396	71747484	6513832	0	-	0.511364	(0.476,0.515]	chr16	631095	1	INTRON	INTRON	AP1G1	ENSG00000166747.13	ENST00000299980.9:ENST00000569748.5:ENST00000393512.7:ENST00000565009.5:ENST00000565642.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	33	2	1.91817	3.179725	4.44128	0.0459211	0.0151924	0.164984	0.0994339
chr19	1431437	1431533	6995345	0	+	0.489583	(0.476,0.515]	chr19	693220	7	INTRON	INTRON	DAZAP1	ENSG00000071626.17	ENST00000336761.10:ENST00000233078.9:ENST00000592522.5:ENST00000587079.5:ENST00000592453.2:ENST00000589484.5:ENST00000585485.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	33	2	1.91817	3.179725	4.44128	0.0459211	0.0151924	0.164984	0.0994339
chr19	11775623	11775722	7018808	0	+	0.484848	(0.476,0.515]	chr19	697771	81	INTRON	INTRON	ZNF441	ENSG00000197044.11	ENST00000357901.5:ENST00000462251.1:ENST00000409902.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	33	2	1.91817	3.179725	4.44128	0.0459211	0.0151924	0.164984	0.0994339
chr15	58604293	58604392	6192042	0	-	0.454545	(0.44,0.476]	chr15	589892	42	INTRON	INTRON	ADAM10	ENSG00000137845.15	ENST00000260408.8:ENST00000402627.5:ENST00000561288.1:ENST00000482945.5:ENST00000396136.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	70	2	1.21549	3.1796349999999998	5.14378	0.0472133	0.00184943	0.168877	0.0388609
chr2	232857155	232857254	1038893	0	+	0.373737	(0.35,0.378]	chr2	110850	4	UTR3	UTR3:EXON_MRNA	GIGYF2	ENSG00000204120.16	ENST00000629305.2:ENST00000409480.5:ENST00000373563.9:ENST00000409547.5:ENST00000409196.7:ENST00000409451.7:ENST00000677591.1:ENST00000678230.1:ENST00000678339.1:ENST00000677450.1:ENST00000678466.1:ENST00000678885.1:ENST00000676848.1:ENST00000474312.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	95	2	2.59827	3.179615	3.76096	0.0016492	4.8203e-4	0.0375159	0.0203411
chr14	74672730	74672830	5922592	0	-	0.33	(0.32,0.35]	chr14	562751	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	AREL1	ENSG00000119682.18	ENST00000557401.5:ENST00000356357.9:ENST00000681099.1:ENST00000681535.1:ENST00000681599.1:ENST00000555330.5:ENST00000680030.1:ENST00000556202.5:ENST00000481010.6:ENST00000556327.5:ENST00000469797.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	64	2	2.74415	3.17961	3.61507	0.0198267	6.48785e-4	0.109608	0.0230814
chr4	26383784	26383884	1937307	0	+	0.35	(0.32,0.35]	chr4	194385	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	RBPJ	ENSG00000168214.22	ENST00000512351.5:ENST00000681799.1:ENST00000681403.1:ENST00000342295.6:ENST00000512671.6:ENST00000506956.5:ENST00000345843.8:ENST00000361572.10:ENST00000514380.5:ENST00000514807.5:ENST00000348160.9:ENST00000681506.1:ENST00000509158.6:ENST00000691085.1:ENST00000692303.1:ENST00000681856.1:ENST00000513182.5:ENST00000681025.1:ENST00000681679.1:ENST00000680210.1:ENST00000355476.8:ENST00000680140.1:ENST00000511401.5:ENST00000680511.1:ENST00000510778.7:ENST00000679698.1:ENST00000679469.1:ENST00000681484.1:ENST00000505958.6:ENST00000507561.5:ENST00000514730.5:ENST00000507574.5:ENST00000514675.5:ENST00000515573.5:ENST00000689192.1:ENST00000680928.1:ENST00000681260.1:ENST00000681093.1:ENST00000504423.2:ENST00000511546.5:ENST00000342320.8:ENST00000504907.5:ENST00000511451.5:ENST00000681264.1:ENST00000504938.1:ENST00000680204.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	64	2	2.74415	3.17961	3.61507	0.0198267	6.48785e-4	0.109608	0.0230814
chr6	31742376	31742476	2843501	0	+	0.46	(0.44,0.476]	chr6	267767	1	SS3_PROX	SS3_PROX:INTRON	MSH5:MSH5-SAPCD1	ENSG00000204410.16:ENSG00000255152.8	ENST00000652715.1:ENST00000375755.8:ENST00000425703.5:ENST00000375750.9:ENST00000482280.1:ENST00000463094.5:ENST00000650702.1:ENST00000493662.6:ENST00000375703.7:ENST00000375740.7:ENST00000423982.6:ENST00000463144.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	37	2	2.02558	3.17952	4.33346	0.0363567	0.0120349	0.138959	0.0962115
chr15	30643271	30643368	5992447	0	+	0.42268	(0.408,0.44]	chr15	569739	13	INTRON	INTRON	ENSG00000284906:ARHGAP11B	ENSG00000284906.3:ENSG00000285077.3	ENST00000564902.5:ENST00000428041.4:ENST00000693711.1:ENST00000685924.1:ENST00000563110.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	162	2	2.79716	3.1795099999999996	3.56186	3.2852e-4	6.20041e-6	0.0167556	0.00174887
chr12	98542438	98542538	5198896	0	+	0.36	(0.35,0.378]	chr12	491821	45	INTRON	INTRON	TMPO	ENSG00000120802.14	ENST00000556029.6:ENST00000343315.9:ENST00000393053.6:ENST00000556678.1	protein_coding	protein_coding	protein_coding	protein_coding	5	131	2	3.03481	3.179335	3.32386	3.07347e-4	1.8439e-4	0.0161362	0.0118315
chr8	140633495	140633594	4076546	0	-	0.525253	(0.515,0.57]	chr8	370289	63	INTRON	INTRON	AGO2	ENSG00000123908.12	ENST00000220592.10:ENST00000519980.5:ENST00000523609.5:ENST00000517293.5:ENST00000518019.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	52	2	2.65834	3.1793199999999997	3.7003	0.0187418	3.73715e-4	0.117523	0.0179087
chr12	130798208	130798300	5447836	0	-	0.445652	(0.44,0.476]	chr12	521527	3	SS5_PROX	SS5_PROX:INTRON	STX2	ENSG00000111450.14	ENST00000261653.10:ENST00000392373.7	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	2.38219	3.1792249999999997	3.97626	0.045456	0.0300538	0.149888	0.142135
chr16	67760032	67760132	6505211	0	-	0.45	(0.44,0.476]	chr16	629631	3	SS3_PROX	SS3_PROX:INTRON	RANBP10	ENSG00000141084.12	ENST00000317506.8:ENST00000448631.6:ENST00000602506.5:ENST00000602677.5:ENST00000602525.5:ENST00000602638.5:ENST00000602815.5:ENST00000602887.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	27	2	2.38219	3.1792249999999997	3.97626	0.045456	0.0300538	0.149888	0.142135
chr18	12343531	12343631	6946790	0	-	0.47	(0.44,0.476]	chr18	687192	27	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:INTRON	AFG3L2	ENSG00000141385.12	ENST00000269143.8:ENST00000691970.1:ENST00000691179.1:ENST00000687337.1:ENST00000692988.1:ENST00000692497.1:ENST00000688199.1:ENST00000683671.1:ENST00000588893.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	27	2	2.38219	3.1792249999999997	3.97626	0.045456	0.0300538	0.149888	0.142135
chr2	55615606	55615706	1125102	0	-	0.46	(0.44,0.476]	chr2	120681	1	SS3_PROX	SS3_PROX:INTRON	PPP4R3B	ENSG00000275052.5	ENST00000616407.2:ENST00000611717.4:ENST00000616288.4:ENST00000470801.1:ENST00000612688.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	27	2	2.38219	3.1792249999999997	3.97626	0.045456	0.0300538	0.149888	0.142135
chr2	229829881	229829974	1340731	0	-	0.451613	(0.44,0.476]	chr2	140415	2	INTRON	INTRON	TRIP12	ENSG00000153827.14	ENST00000675453.1:ENST00000675903.1:ENST00000283943.9:ENST00000675423.1:ENST00000389044.8:ENST00000389045.7:ENST00000479037.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	27	2	2.38219	3.1792249999999997	3.97626	0.045456	0.0300538	0.149888	0.142135
chr22	26524180	26524280	7564395	0	-	0.46	(0.44,0.476]	chr22	773991	23	UTR3	UTR3:EXON_MRNA	TPST2	ENSG00000128294.16	ENST00000338754.9	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	2.38219	3.1792249999999997	3.97626	0.045456	0.0300538	0.149888	0.142135
chr6	98929806	98929905	3165407	0	-	0.444444	(0.44,0.476]	chr6	295219	16	INTRON	INTRON	FBXL4	ENSG00000112234.9	ENST00000369244.7:ENST00000229971.2	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	2.38219	3.1792249999999997	3.97626	0.045456	0.0300538	0.149888	0.142135
chr1	27468401	27468501	406547	0	-	0.5	(0.476,0.515]	chr1	48986	391	INTRON	INTRON	WASF2	ENSG00000158195.11	ENST00000618852.5:ENST00000536657.1	protein_coding	protein_coding	protein_coding	protein_coding	1	26	2	2.13854	3.17909	4.21964	0.0776563	0.0167715	0.196285	0.110511
chr1	168063020	168063120	249774	0	+	0.48	(0.476,0.515]	chr1	29648	117	INTRON	INTRON	DCAF6	ENSG00000143164.16	ENST00000432587.6:ENST00000367843.7:ENST00000367840.4:ENST00000312263.10:ENST00000489398.1:ENST00000478668.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	26	2	2.13854	3.17909	4.21964	0.0776563	0.0167715	0.196285	0.110511
chr12	6588922	6589014	5259455	0	-	0.478261	(0.476,0.515]	chr12	500742	1	INTRON	INTRON	CHD4	ENSG00000111642.16	ENST00000645022.1:ENST00000544040.7:ENST00000544484.6:ENST00000357008.7:ENST00000642810.1:ENST00000643335.1:ENST00000643815.1:ENST00000646806.1:ENST00000644137.1:ENST00000642879.1:ENST00000645645.1:ENST00000642594.1:ENST00000646268.1:ENST00000645095.1:ENST00000644352.1:ENST00000647483.1:ENST00000646608.1:ENST00000645005.1:ENST00000644801.1:ENST00000644289.1:ENST00000646366.1:ENST00000644356.1:ENST00000646070.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	26	2	2.13854	3.17909	4.21964	0.0776563	0.0167715	0.196285	0.110511
chr14	90287444	90287535	5948325	0	-	0.483516	(0.476,0.515]	chr14	564811	6	INTRON	INTRON	NRDE2	ENSG00000119720.18	ENST00000354366.8:ENST00000556189.5:ENST00000553409.5:ENST00000555903.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	26	2	2.13854	3.17909	4.21964	0.0776563	0.0167715	0.196285	0.110511
chr16	24028938	24029038	6325692	0	+	0.51	(0.476,0.515]	chr16	605711	400	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000498739.1:ENST00000647422.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	26	2	2.13854	3.17909	4.21964	0.0776563	0.0167715	0.196285	0.110511
chr16	24211666	24211765	6327543	0	+	0.484848	(0.476,0.515]	chr16	605806	33	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1	protein_coding	protein_coding	protein_coding	protein_coding	1	26	2	2.13854	3.17909	4.21964	0.0776563	0.0167715	0.196285	0.110511
chr17	51053429	51053528	6796341	0	-	0.494949	(0.476,0.515]	chr17	671012	56	INTRON	INTRON	SPAG9	ENSG00000008294.22	ENST00000262013.12:ENST00000505279.5:ENST00000357122.8:ENST00000514613.5:ENST00000505173.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	26	2	2.13854	3.17909	4.21964	0.0776563	0.0167715	0.196285	0.110511
chr2	165946272	165946354	1253899	0	-	0.487805	(0.476,0.515]	chr2	132943	2	SS5_PROX	SS5_PROX:INTRON	TTC21B	ENSG00000123607.16	ENST00000680888.1:ENST00000680947.1:ENST00000681083.1:ENST00000681024.1:ENST00000680690.1:ENST00000679676.1:ENST00000679967.1:ENST00000679356.1:ENST00000680327.1:ENST00000681502.1:ENST00000681483.1:ENST00000680657.1:ENST00000679931.1:ENST00000681952.1:ENST00000652557.1:ENST00000679799.1:ENST00000681819.1:ENST00000243344.8:ENST00000679840.1:ENST00000680448.1:ENST00000681606.1:ENST00000679671.1:ENST00000464374.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	26	2	2.13854	3.17909	4.21964	0.0776563	0.0167715	0.196285	0.110511
chr22	31552845	31552945	7504565	0	+	0.51	(0.476,0.515]	chr22	765699	21	INTRON	INTRON	SFI1	ENSG00000198089.16	ENST00000540643.5:ENST00000432498.5:ENST00000443011.5:ENST00000400288.7:ENST00000400289.5:ENST00000382162.7:ENST00000524296.5:ENST00000450787.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	26	2	2.13854	3.17909	4.21964	0.0776563	0.0167715	0.196285	0.110511
chr3	60215230	60215330	1711766	0	-	0.49	(0.476,0.515]	chr3	176138	1345	INTRON	INTRON	FHIT	ENSG00000189283.10	ENST00000492590.6:ENST00000476844.5:ENST00000468189.5:ENST00000488467.5	protein_coding	protein_coding	protein_coding	protein_coding	1	26	2	2.13854	3.17909	4.21964	0.0776563	0.0167715	0.196285	0.110511
chr6	10791753	10791853	2811120	0	+	0.5	(0.476,0.515]	chr6	264506	212	INTRON	INTRON	TMEM14B	ENSG00000137210.14	ENST00000463448.5:ENST00000473166.5:ENST00000460341.5:ENST00000473807.5:ENST00000463100.5:ENST00000478732.1:ENST00000467229.1:ENST00000489137.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	1	26	2	2.13854	3.17909	4.21964	0.0776563	0.0167715	0.196285	0.110511
chr7	4993115	4993213	3271236	0	+	0.479592	(0.476,0.515]	chr7	304039	36	INTRON	INTRON	RNF216P1	ENSG00000196204.12	ENST00000406089.6:ENST00000477090.5:ENST00000404006.5:ENST00000403969.5:ENST00000494947.5:ENST00000406608.2:ENST00000405396.2:ENST00000464479.1	lncRNA	lncRNA	lncRNA	lncRNA	1	26	2	2.13854	3.17909	4.21964	0.0776563	0.0167715	0.196285	0.110511
chr9	86324458	86324555	4277675	0	-	0.494845	(0.476,0.515]	chr9	393537	2	EXON_LNCRNA	EXON_LNCRNA:SS3_PROX:INTRON	TUT7	ENSG00000083223.18	ENST00000375960.6:ENST00000277141.10:ENST00000375963.8:ENST00000469004.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	26	2	2.13854	3.17909	4.21964	0.0776563	0.0167715	0.196285	0.110511
chr9	100010823	100010923	4307753	0	-	0.48	(0.476,0.515]	chr9	395764	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	ERP44	ENSG00000023318.9	ENST00000262455.7:ENST00000685319.1:ENST00000691188.1:ENST00000687025.1:ENST00000687093.1:ENST00000690739.1:ENST00000687017.1:ENST00000690317.1:ENST00000691823.1:ENST00000686275.1:ENST00000689406.1:ENST00000684842.1:ENST00000688230.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	26	2	2.13854	3.17909	4.21964	0.0776563	0.0167715	0.196285	0.110511
chr19	1422896	1422995	6995255	0	+	0.59596	(0.57,1]	chr19	693200	1	INTRON	INTRON	DAZAP1	ENSG00000071626.17	ENST00000336761.10:ENST00000233078.9:ENST00000592522.5:ENST00000586579.5:ENST00000587079.5:ENST00000592453.2:ENST00000589484.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	13	149	2	2.96634	3.179025	3.39171	2.94662e-6	1.39024e-7	0.00120829	1.68566e-4
chr1	44971976	44972076	437648	0	-	0.39	(0.378,0.408]	chr1	52970	1	SS5_PROX	SS5_PROX:INTRON	EIF2B3	ENSG00000070785.17	ENST00000620860.4:ENST00000360403.7:ENST00000372183.7:ENST00000480675.5:ENST00000477953.5:ENST00000372182.6:ENST00000487532.5:ENST00000497010.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	29	2	2.53503	3.178985	3.82294	0.044228	0.0319942	0.162255	0.13174
chr3	13348793	13348893	1617866	0	-	0.45	(0.44,0.476]	chr3	167134	51	INTRON	INTRON	NUP210	ENSG00000132182.13	ENST00000254508.7:ENST00000695490.1:ENST00000695491.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	152	2	2.40991	3.1789199999999997	3.94793	8.42944e-4	7.75524e-6	0.0263813	0.00209823
chr1	100405322	100405422	173158	0	+	0.36	(0.35,0.378]	chr1	18824	141	INTRON	INTRON	CDC14A	ENSG00000079335.20	ENST00000646665.1:ENST00000644844.1:ENST00000635056.2:ENST00000647005.1:ENST00000647203.1:ENST00000644676.1:ENST00000361544.11:ENST00000370124.8:ENST00000336454.5:ENST00000644813.1:ENST00000455467.6:ENST00000646563.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	43	2	1.87586	3.17885	4.48184	0.0268864	0.0191702	0.135275	0.108861
chr2	60783309	60783409	785414	0	+	0.37	(0.35,0.378]	chr2	88333	1	SS5_PROX	SS5_PROX:INTRON	PAPOLG	ENSG00000115421.13	ENST00000496283.5:ENST00000414060.5:ENST00000238714.8:ENST00000453839.5:ENST00000412217.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	43	2	1.87586	3.17885	4.48184	0.0268864	0.0191702	0.135275	0.108861
chr1	21692086	21692185	395922	0	-	0.424242	(0.408,0.44]	chr1	47211	16	INTRON	INTRON	USP48	ENSG00000090686.16	ENST00000400301.5:ENST00000308271.14:ENST00000374732.7:ENST00000529637.5:ENST00000464577.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	40	2	1.75791	3.1788499999999997	4.59979	0.0378795	0.0109537	0.157034	0.0873034
chr12	22657016	22657106	5095066	0	+	0.433333	(0.408,0.44]	chr12	481242	4	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	ETNK1	ENSG00000139163.16	ENST00000671733.1:ENST00000266517.9:ENST00000538218.2:ENST00000673496.1:ENST00000673406.1:ENST00000672995.1:ENST00000539974.1:ENST00000673188.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	40	2	1.75791	3.1788499999999997	4.59979	0.0378795	0.0109537	0.157034	0.0873034
chr8	31140136	31140235	3729021	0	+	0.414141	(0.408,0.44]	chr8	346656	73	INTRON	INTRON	WRN	ENSG00000165392.11	ENST00000650667.1:ENST00000298139.7:ENST00000521620.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	74	2	2.69457	3.1788350000000003	3.6631	0.00331036	6.21419e-4	0.0527031	0.0229151
chr3	194418786	194418884	1890484	0	-	0.418367	(0.408,0.44]	chr3	189102	33	INTRON	INTRON	ATP13A3	ENSG00000133657.17	ENST00000687055.1:ENST00000645538.1:ENST00000645319.2:ENST00000690810.1:ENST00000429136.7:ENST00000645621.1:ENST00000461660.2:ENST00000685123.1:ENST00000642744.2:ENST00000439040.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	46	2	1.60344	3.17871	4.75398	0.0387506	0.00703931	0.160156	0.0718189
chr10	22690522	22690621	4580262	0	-	0.40404	(0.378,0.408]	chr10	422040	283	INTRON	INTRON	PIP4K2A	ENSG00000150867.14	ENST00000376573.9:ENST00000545335.5:ENST00000605011.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	53	2	1.54765	3.178665	4.80968	0.0334147	0.00679828	0.146709	0.0711802
chr2	238180081	238180180	1344003	0	-	0.484848	(0.476,0.515]	chr2	140893	61	INTRON	INTRON	ILKAP	ENSG00000132323.9	ENST00000254654.8:ENST00000463129.5:ENST00000612675.4:ENST00000622223.4:ENST00000450411.1:ENST00000466468.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	40	2	1.74317	3.178595	4.61402	0.0396373	0.00947755	0.161534	0.0817766
chr1	19340894	19340992	387448	0	-	0.489796	(0.476,0.515]	chr1	46339	14	UTR3	UTR3:EXON_MRNA:INTRON	CAPZB	ENSG00000077549.19	ENST00000264202.8:ENST00000264203.7:ENST00000375142.5:ENST00000482808.2:ENST00000674449.1:ENST00000674299.1:ENST00000674390.1:ENST00000375144.6:ENST00000674432.1:ENST00000433834.5:ENST00000674228.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	56	2	1.32251	3.178585	5.03466	0.0533705	0.00252065	0.179876	0.0446195
chr19	11105882	11105973	7016982	0	+	0.417582	(0.408,0.44]	chr19	697438	3	SS5_PROX	SS5_PROX:INTRON	LDLR	ENSG00000130164.14	ENST00000557933.5:ENST00000558518.6:ENST00000545707.5:ENST00000535915.5:ENST00000455727.6:ENST00000558013.5:ENST00000252444.9:ENST00000560467.1	protein_coding	protein_coding	protein_coding	protein_coding	23	514	2	3.06785	3.1785699999999997	3.28929	1.63806e-6	1.85279e-7	8.54797e-4	2.00846e-4
chr17	7578572	7578659	6553865	0	+	0.333333	(0.32,0.35]	chr17	636742	2	UTR3	UTR3:EXON_MRNA	EIF4A1	ENSG00000161960.16	ENST00000293831.13:ENST00000577269.5:ENST00000582746.5:ENST00000578324.5:ENST00000583389.5:ENST00000582050.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	119	2	2.92893	3.178425	3.42792	0.00138	2.20344e-4	0.0341261	0.0135673
chr19	19412117	19412217	7035410	0	+	0.33	(0.32,0.35]	chr19	701433	57	INTRON	INTRON	GATAD2A	ENSG00000167491.18	ENST00000494516.6:ENST00000360315.7:ENST00000609040.5:ENST00000417582.6:ENST00000683918.1:ENST00000448576.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	41	2	1.88909	3.1783349999999997	4.46758	0.0553737	0.0119306	0.165463	0.0962115
chr11	85967940	85968040	5013799	0	-	0.37	(0.35,0.378]	chr11	472906	68	INTRON	INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000530692.5:ENST00000526548.3:ENST00000630913.2:ENST00000529760.5:ENST00000528398.5:ENST00000532603.5:ENST00000356360.9:ENST00000529016.5:ENST00000526961.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	176	2	2.76921	3.17823	3.58725	4.59253e-4	6.57482e-6	0.01978	0.00181159
chr12	132559351	132559450	5251493	0	+	0.494949	(0.476,0.515]	chr12	499468	110	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1	protein_coding	protein_coding	protein_coding	protein_coding	3	73	2	3.11021	3.1780850000000003	3.24596	0.00322919	5.02606e-4	0.0507087	0.020217099999999998
chr19	15290447	15290547	7146985	0	-	0.36	(0.35,0.378]	chr19	721965	101	INTRON	INTRON	BRD4	ENSG00000141867.19	ENST00000679869.1:ENST00000360016.9:ENST00000594841.5:ENST00000597315.5:ENST00000601941.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	54	2	1.43253	3.1780399999999998	4.92355	0.0486238	0.00573514	0.173047	0.0657377
chrX	9512425	9512525	7619128	0	+	0.34	(0.32,0.35]	chrX	779944	102	INTRON	INTRON	TBL1X	ENSG00000101849.18	ENST00000407597.7:ENST00000380961.5:ENST00000424279.6:ENST00000645353.2:ENST00000422314.5	protein_coding	protein_coding	protein_coding	protein_coding	4	104	2	2.33698	3.17802	4.01906	0.00536261	1.78578e-4	0.0663076	0.0121697
chr22	35881369	35881469	7582524	0	-	0.42	(0.408,0.44]	chr22	775894	409	INTRON	INTRON	RBFOX2	ENSG00000100320.24	ENST00000438146.7:ENST00000695854.1:ENST00000359369.8:ENST00000695807.1:ENST00000408983.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	56	2	3.02513	3.1779	3.33067	0.0059965	0.0024459	0.0700606	0.0445752
chr10	101810414	101810514	4680895	0	-	0.37	(0.35,0.378]	chr10	432011	1	SS3_PROX	SS3_PROX:INTRON	OGA	ENSG00000198408.14	ENST00000439817.5:ENST00000361464.8:ENST00000357797.9:ENST00000370094.7:ENST00000429860.1	protein_coding	protein_coding	protein_coding	protein_coding	3	81	2	2.32464	3.1777699999999998	4.0309	0.0159285	7.36864e-5	0.101453	0.00714826
chr16	47466487	47466586	6343353	0	+	0.333333	(0.32,0.35]	chr16	608849	21	INTRON	INTRON	PHKB	ENSG00000102893.17	ENST00000566037.6:ENST00000566044.5:ENST00000299167.12:ENST00000696809.1:ENST00000323584.10:ENST00000565424.2:ENST00000567402.5:ENST00000563376.5:ENST00000564873.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	63	2	2.89743	3.177575	3.45772	0.0127608	0.00128487	0.0926667	0.0333518
chr19	58390877	58390977	7107617	0	+	0.36	(0.35,0.378]	chr19	713447	20	INTRON	INTRON	RPS5	ENSG00000083845.9	ENST00000601521.5:ENST00000596314.5:ENST00000598098.5:ENST00000196551.8:ENST00000598495.5:ENST00000598807.1:ENST00000596046.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	56	2	1.60653	3.177565	4.7486	0.0427748	0.00418965	0.148082	0.0591344
chr6	53287561	53287661	3107568	0	-	0.46	(0.44,0.476]	chr6	291015	3	SS5_PROX	SS5_PROX:INTRON	ELOVL5	ENSG00000012660.14	ENST00000370918.8:ENST00000542638.5:ENST00000304434.11:ENST00000485336.5:ENST00000465983.5:ENST00000486973.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	73	2	2.73781	3.177495	3.61718	0.00276493	7.37432e-4	0.04867	0.02495
chr1	22084165	22084263	42528	0	+	0.387755	(0.378,0.408]	chr1	5116	20	INTRON	INTRON	ENSG00000289694:CDC42	ENSG00000289694.1:ENSG00000070831.18	ENST00000695855.1:ENST00000695856.1:ENST00000344548.8:ENST00000400259.5:ENST00000667384.2:ENST00000411827.2:ENST00000695858.1:ENST00000695857.1:ENST00000315554.14:ENST00000695859.1:ENST00000498236.1:ENST00000656825.1:ENST00000651171.1:ENST00000652582.1:ENST00000695860.1:ENST00000695796.1:ENST00000695797.1:ENST00000662562.2:ENST00000695798.1:ENST00000695799.1:ENST00000695800.1:ENST00000695801.1:ENST00000695802.1:ENST00000695861.1:ENST00000695862.1:ENST00000695863.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	47	2	1.6165	3.177445	4.73839	0.0374185	0.00837252	0.155878	0.0774402
chr5	95734913	95735011	2431278	0	+	0.326531	(0.32,0.35]	chr5	233640	23	INTRON	INTRON	RHOBTB3	ENSG00000164292.13	ENST00000510226.5:ENST00000504949.1:ENST00000506959.5:ENST00000379982.8:ENST00000512878.1:ENST00000510623.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	65	2	2.6321	3.17743	3.72276	0.0268	3.96144e-4	0.123349	0.0178616
chr6	104999631	104999731	2930277	0	+	0.4	(0.378,0.408]	chr6	276110	410	INTRON	INTRON	LIN28B	ENSG00000187772.8	ENST00000635857.1:ENST00000637759.1:ENST00000345080.5	protein_coding	protein_coding	protein_coding	protein_coding	3	45	2	1.58349	3.17727	4.77105	0.0653091	0.00330823	0.180158	0.0527031
chr6	161058240	161058339	3025160	0	+	0.393939	(0.378,0.408]	chr6	282325	79	INTRON	INTRON	MAP3K4	ENSG00000085511.20	ENST00000366919.6:ENST00000392142.9:ENST00000542952.5:ENST00000366920.6:ENST00000348824.11:ENST00000544041.5:ENST00000490904.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	76	2	2.63057	3.17727	3.72397	0.0053733	3.23378e-4	0.0642754	0.0159645
chr22	49808745	49808845	7603034	0	-	0.47	(0.44,0.476]	chr22	778655	40	INTRON	INTRON	BRD1	ENSG00000100425.19	ENST00000404760.6:ENST00000404034.5:ENST00000216267.12:ENST00000438393.5:ENST00000457780.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	74	2	2.38519	3.177225	3.96926	0.012193	8.75142e-5	0.0910127	0.00785215
chr4	4456090	4456190	2101463	0	-	0.41	(0.408,0.44]	chr4	208129	172	INTRON	INTRON	STX18	ENSG00000168818.10	ENST00000505286.5:ENST00000306200.7:ENST00000503861.5:ENST00000512195.5:ENST00000507908.5:ENST00000512780.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	73	2	2.9826	3.17711	3.37162	0.00208674	9.23082e-4	0.0411801	0.0278392
chr9	131637146	131637244	4362875	0	-	0.530612	(0.515,0.57]	chr9	401254	65	INTRON	INTRON	RAPGEF1	ENSG00000107263.19	ENST00000372195.5:ENST00000372189.7:ENST00000683357.1:ENST00000372190.7:ENST00000481260.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	127	2	2.60485	3.17673	3.74861	2.42252e-4	1.50679e-5	0.0137115	0.00311444
chr1	20740757	20740856	389388	0	-	0.393939	(0.378,0.408]	chr1	46510	6	UTR3	UTR3:EXON_MRNA	HP1BP3	ENSG00000127483.19	ENST00000438032.6	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	2.38873	3.17672	3.96471	0.0458857	0.032421	0.149888	0.145026
chr2	131125053	131125152	864596	0	+	0.383838	(0.378,0.408]	chr2	97130	37	INTRON	INTRON	PLEKHB2	ENSG00000115762.17	ENST00000403716.5:ENST00000439822.6:ENST00000409158.5:ENST00000234115.10:ENST00000628582.2:ENST00000482225.1:ENST00000693505.1:ENST00000438882.6:ENST00000404460.5:ENST00000409612.5:ENST00000409279.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	28	2	2.38873	3.17672	3.96471	0.0458857	0.032421	0.149888	0.145026
chr5	66182527	66182626	2372888	0	+	0.393939	(0.378,0.408]	chr5	228707	38	UTR3	UTR3:EXON_MRNA	SREK1	ENSG00000153914.16	ENST00000334121.11	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	2.38873	3.17672	3.96471	0.0458857	0.032421	0.149888	0.145026
chr9	125188718	125188818	4352415	0	-	0.4	(0.378,0.408]	chr9	399582	4	SS5_PROX	SS5_PROX:INTRON	PPP6C	ENSG00000119414.12	ENST00000373547.9:ENST00000415905.5:ENST00000451402.5:ENST00000456642.1	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	2.38873	3.17672	3.96471	0.0458857	0.032421	0.149888	0.145026
chr7	75424891	75424973	3558307	0	-	0.451219	(0.44,0.476]	chr7	331500	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	POM121C	ENSG00000272391.6	ENST00000615331.5:ENST00000607367.5:ENST00000473168.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	142	2	1.88613	3.1766199999999998	4.46711	0.00465707	4.64215e-6	0.0600108	0.00144728
chr1	184842832	184842932	601730	0	-	0.34	(0.32,0.35]	chr1	71742	105	INTRON	INTRON	NIBAN1	ENSG00000135842.17	ENST00000367511.4:ENST00000487074.5:ENST00000461167.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	36	2	1.81328	3.17658	4.53988	0.0615716	0.0202178	0.193423	0.109913
chr2	235658205	235658305	1042979	0	+	0.35	(0.32,0.35]	chr2	111222	1333	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1:ENST00000402604.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	36	2	1.81328	3.17658	4.53988	0.0615716	0.0202178	0.193423	0.109913
chr3	101578297	101578396	1468444	0	+	0.323232	(0.32,0.35]	chr3	153930	30	INTRON	INTRON	PCNP	ENSG00000081154.12	ENST00000265260.8:ENST00000498274.5:ENST00000460231.5:ENST00000469941.5:ENST00000627393.1:ENST00000486406.5:ENST00000470490.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	36	2	1.81328	3.17658	4.53988	0.0615716	0.0202178	0.193423	0.109913
chr1	156235397	156235494	231127	0	+	0.402062	(0.378,0.408]	chr1	27294	13	INTRON	INTRON	PMF1	ENSG00000160783.19	ENST00000368279.7:ENST00000368273.8:ENST00000368277.3:ENST00000606952.5:ENST00000497069.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	25	2	2.36428	3.176475	3.98867	0.0507	0.0441088	0.162255	0.156383
chr12	102433566	102433666	5208010	0	+	0.39	(0.378,0.408]	chr12	492888	100	INTRON	INTRON	LINC02456	ENSG00000283052.1	ENST00000635615.1	lncRNA	lncRNA	lncRNA	lncRNA	1	25	2	2.36428	3.176475	3.98867	0.0507	0.0441088	0.162255	0.156383
chr13	20042979	20043079	5453289	0	+	0.4	(0.378,0.408]	chr13	522513	57	INTRON	INTRON	ZMYM2	ENSG00000121741.17	ENST00000382874.6:ENST00000610343.5:ENST00000382871.3:ENST00000382883.7:ENST00000382870.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	25	2	2.36428	3.176475	3.98867	0.0507	0.0441088	0.162255	0.156383
chr14	31206615	31206715	5859006	0	-	0.38	(0.378,0.408]	chr14	556737	2	SS5_PROX	SS5_PROX:INTRON	HECTD1	ENSG00000092148.14	ENST00000399332.6:ENST00000553700.5:ENST00000693685.1:ENST00000692835.1:ENST00000554882.6:ENST00000611816.5:ENST00000688933.1:ENST00000691390.1:ENST00000553957.6:ENST00000687002.1:ENST00000554471.3:ENST00000556224.6:ENST00000556474.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	25	2	2.36428	3.176475	3.98867	0.0507	0.0441088	0.162255	0.156383
chr16	74575804	74575904	6525019	0	-	0.4	(0.378,0.408]	chr16	631842	126	INTRON	INTRON	GLG1	ENSG00000090863.12	ENST00000205061.9:ENST00000422840.7:ENST00000447066.6:ENST00000562090.5:ENST00000567951.5:ENST00000627032.2:ENST00000565260.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	25	2	2.36428	3.176475	3.98867	0.0507	0.0441088	0.162255	0.156383
chr2	206074542	206074642	1317334	0	-	0.4	(0.378,0.408]	chr2	138079	105	INTRON	INTRON	INO80D	ENSG00000114933.16	ENST00000403263.6:ENST00000414320.1	protein_coding	protein_coding	protein_coding	protein_coding	1	25	2	2.36428	3.176475	3.98867	0.0507	0.0441088	0.162255	0.156383
chr2	207538078	207538178	991285	0	+	0.38	(0.378,0.408]	chr2	106504	30	INTRON	INTRON	CREB1	ENSG00000118260.15	ENST00000430624.5:ENST00000432329.6:ENST00000445803.5:ENST00000421139.5:ENST00000353267.8:ENST00000494094.5:ENST00000452474.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	25	2	2.36428	3.176475	3.98867	0.0507	0.0441088	0.162255	0.156383
chr3	47130959	47131059	1681274	0	-	0.38	(0.378,0.408]	chr3	171624	39	INTRON	INTRON	SETD2	ENSG00000181555.22	ENST00000691544.1:ENST00000638947.2:ENST00000409792.4:ENST00000412450.1	protein_coding	protein_coding	protein_coding	protein_coding	1	25	2	2.36428	3.176475	3.98867	0.0507	0.0441088	0.162255	0.156383
chr7	98902097	98902195	3359499	0	+	0.397959	(0.378,0.408]	chr7	313416	10	INTRON	INTRON	TRRAP	ENSG00000196367.14	ENST00000355540.7:ENST00000359863.8:ENST00000628380.2:ENST00000456197.2:ENST00000446306.7	protein_coding	protein_coding	protein_coding	protein_coding	1	25	2	2.36428	3.176475	3.98867	0.0507	0.0441088	0.162255	0.156383
chr4	39457354	39457431	2129333	0	-	0.350649	(0.35,0.378]	chr4	209924	1	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	RPL9	ENSG00000163682.17	ENST00000645496.2:ENST00000295955.14:ENST00000503277.6:ENST00000508595.6:ENST00000449470.6:ENST00000506581.6:ENST00000503040.5:ENST00000511075.5:ENST00000437992.2:ENST00000514842.6:ENST00000645585.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	164	2	2.83102	3.176275	3.52153	5.35542e-4	2.33187e-5	0.0209215	0.00395254
chr17	68040394	68040488	6669388	0	+	0.37234	(0.35,0.378]	chr17	650746	2	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	KPNA2	ENSG00000182481.10	ENST00000676857.1:ENST00000676594.1:ENST00000677827.1:ENST00000676622.1:ENST00000678054.1:ENST00000583269.5:ENST00000678388.1:ENST00000677918.1:ENST00000676902.1:ENST00000677419.1:ENST00000679346.1:ENST00000677223.1:ENST00000677695.1:ENST00000679078.1:ENST00000330459.8:ENST00000584026.6:ENST00000537025.6:ENST00000677086.1:ENST00000579754.2:ENST00000583392.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	59	2	2.94111	3.17625	3.41139	0.0104563	0.00143263	0.0855102	0.0347139
chr7	120950762	120950829	3393349	0	+	0.522388	(0.515,0.57]	chr7	317589	1	UTR5	UTR5:EXON_MRNA	ING3	ENSG00000071243.16	ENST00000339121.9:ENST00000315870.10:ENST00000427726.5:ENST00000445699.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	14	243	2	2.82791	3.17621	3.52451	4.08635e-6	2.29027e-6	0.00134281	0.00105332
chr19	57790955	57791011	7105427	0	+	0.607143	(0.57,1]	chr19	713174	2	INTRON	INTRON	ZNF586	ENSG00000083828.16	ENST00000651718.1:ENST00000598885.5:ENST00000598183.1:ENST00000599802.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	40	2	2.86892	3.176145	3.48337	0.00125753	6.20854e-4	0.0323608	0.0223951
chr6	4907344	4907444	2792174	0	+	0.53	(0.515,0.57]	chr6	263614	146	INTRON	INTRON	CDYL	ENSG00000153046.18	ENST00000328908.9:ENST00000440139.5:ENST00000397588.8:ENST00000472453.5:ENST00000449732.6:ENST00000343762.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	140	2	2.80304	3.1760099999999998	3.54898	1.68851e-4	7.69658e-6	0.0112811	0.0020904
chr1	231354338	231354436	337591	0	+	0.357143	(0.35,0.378]	chr1	39304	11	UTR3	UTR3:EXON_MRNA	SPRTN	ENSG00000010072.16	ENST00000295050.12	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	2.1617	3.17596	4.19022	0.0771502	0.0209891	0.196285	0.122348
chr11	61427032	61427129	4957032	0	-	0.350515	(0.35,0.378]	chr11	465888	7	EXON_MRNA	EXON_MRNA:INTRON	CPSF7:ENSG00000279632	ENSG00000149532.16:ENSG00000279632.1	ENST00000340437.8:ENST00000394888.8:ENST00000439958.8:ENST00000448745.5:ENST00000537641.5:ENST00000477890.6:ENST00000544669.5:ENST00000539952.5:ENST00000535222.5:ENST00000544990.5:ENST00000544585.5:ENST00000413232.5:ENST00000537162.5:ENST00000543545.5:ENST00000541963.5:ENST00000536548.5:ENST00000450000.5:ENST00000449811.5:ENST00000413184.6:ENST00000536145.3:ENST00000545934.5:ENST00000463244.6:ENST00000626926.1:ENST00000489728.1:ENST00000474684.1:ENST00000623917.1	protein_coding	protein_coding	protein_coding:TEC	protein_coding:retained_intron:nonsense_mediated_decay:TEC:processed_transcript	1	28	2	2.1617	3.17596	4.19022	0.0771502	0.0209891	0.196285	0.122348
chr12	50444822	50444921	5136785	0	+	0.373737	(0.35,0.378]	chr12	484418	28	INTRON	INTRON	LARP4	ENSG00000161813.23	ENST00000293618.12:ENST00000429001.7:ENST00000398473.7:ENST00000522085.5:ENST00000518444.5:ENST00000518561.5:ENST00000347328.9:ENST00000520064.2:ENST00000521120.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	28	2	2.1617	3.17596	4.19022	0.0771502	0.0209891	0.196285	0.122348
chr15	29722102	29722201	6124386	0	-	0.373737	(0.35,0.378]	chr15	583482	10	INTRON	INTRON	TJP1	ENSG00000104067.17	ENST00000346128.10:ENST00000614355.5:ENST00000400011.6:ENST00000356107.11:ENST00000677774.1:ENST00000545208.6	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	2.1617	3.17596	4.19022	0.0771502	0.0209891	0.196285	0.122348
chr3	33824207	33824303	1394644	0	+	0.364583	(0.35,0.378]	chr3	146048	18	INTRON	INTRON	PDCD6IP	ENSG00000170248.15	ENST00000457054.6:ENST00000648706.1:ENST00000435909.5:ENST00000413073.1:ENST00000307296.8:ENST00000477798.5:ENST00000484478.5:ENST00000494810.1:ENST00000459659.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	28	2	2.1617	3.17596	4.19022	0.0771502	0.0209891	0.196285	0.122348
chr7	158650731	158650831	3688223	0	-	0.37	(0.35,0.378]	chr7	342133	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	NCAPG2	ENSG00000146918.20	ENST00000356309.8:ENST00000432615.5:ENST00000409423.5:ENST00000441982.5:ENST00000467785.5:ENST00000409339.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	28	2	2.1617	3.17596	4.19022	0.0771502	0.0209891	0.196285	0.122348
chr22	43170842	43170937	7598520	0	-	0.473684	(0.44,0.476]	chr22	778248	7	INTRON	INTRON	TTLL12	ENSG00000100304.13	ENST00000216129.7:ENST00000494035.1	protein_coding	protein_coding	protein_coding	protein_coding	2	56	2	2.9586	3.17591	3.39322	0.00758318	0.00187283	0.0773151	0.0390476
chr7	152329202	152329302	3680221	0	-	0.4	(0.378,0.408]	chr7	341641	135	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000684262.1:ENST00000682301.1:ENST00000452749.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	76	2	2.51733	3.1759	3.83447	0.00808319	1.86403e-4	0.0766625	0.0119078
chr3	42648340	42648439	1406472	0	+	0.464646	(0.44,0.476]	chr3	147732	25	UTR3	UTR3:EXON_MRNA	NKTR	ENSG00000114857.19	ENST00000429888.5:ENST00000232978.13	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	60	2	1.20745	3.1756149999999996	5.14378	0.0635101	0.00184943	0.198164	0.0388609
chr17	37310758	37310858	6762083	0	-	0.33	(0.32,0.35]	chr17	664944	111	INTRON	INTRON	ACACA	ENSG00000278540.5	ENST00000616317.5:ENST00000614428.4:ENST00000613146.4:ENST00000615229.4:ENST00000621960.1:ENST00000617548.1:ENST00000616352.4:ENST00000614789.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	114	2	3.11875	3.1755899999999997	3.23243	8.95981e-4	3.30385e-4	0.027646	0.0161444
chr6	18250438	18250538	3069105	0	-	0.43	(0.408,0.44]	chr6	285195	2	INTRON	INTRON	DEK	ENSG00000124795.17	ENST00000652689.1:ENST00000651624.1:ENST00000515770.2:ENST00000651992.1:ENST00000507591.2:ENST00000505224.5:ENST00000244776.11:ENST00000652576.1:ENST00000512145.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	136	2	2.36252	3.175555	3.98859	0.00260554	2.7983e-6	0.0455058	0.00107271
chr1	45837878	45837978	94156	0	+	0.53	(0.515,0.57]	chr1	12696	79	INTRON	INTRON	MAST2	ENSG00000086015.23	ENST00000470809.1:ENST00000361297.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	66	2	2.21273	3.17554	4.13835	0.0196151	2.53131e-5	0.109486	0.00394111
chr18	26016538	26016634	6958968	0	-	0.53125	(0.515,0.57]	chr18	688400	4	UTR3	UTR3:EXON_MRNA	SS18	ENSG00000141380.14	ENST00000415083.7	protein_coding	protein_coding	protein_coding	protein_coding	5	101	2	2.97816	3.17546	3.37276	2.365e-4	1.02064e-4	0.0140941	0.00853098
chr11	66762450	66762550	4811524	0	+	0.51	(0.476,0.515]	chr11	447954	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	C11orf80	ENSG00000173715.18	ENST00000524551.5:ENST00000525908.6:ENST00000540737.7:ENST00000527634.5:ENST00000527368.5:ENST00000531400.6:ENST00000642265.1:ENST00000532565.6:ENST00000525449.6:ENST00000360962.10:ENST00000532727.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	54	2	3.05152	3.175455	3.29939	0.0064848	0.00211868	0.0699952	0.0425644
chr16	81385841	81385941	6404946	0	+	0.5	(0.476,0.515]	chr16	615020	84	UTR3	UTR3:EXON_MRNA	GAN	ENSG00000261609.8	ENST00000648994.2	protein_coding	protein_coding	protein_coding	protein_coding	2	54	2	3.05152	3.175455	3.29939	0.0064848	0.00211868	0.0699952	0.0425644
chr20	50593496	50593596	7354439	0	-	0.49	(0.476,0.515]	chr20	749979	3	SS3_PROX	SS3_PROX:INTRON	RIPOR3	ENSG00000042062.13	ENST00000327979.8:ENST00000045083.6:ENST00000488529.5:ENST00000482129.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	54	2	3.05152	3.175455	3.29939	0.0064848	0.00211868	0.0699952	0.0425644
chr17	30848392	30848491	6590593	0	+	0.444444	(0.44,0.476]	chr17	640948	31	INTRON	INTRON	ATAD5	ENSG00000176208.9	ENST00000321990.5:ENST00000578295.5:ENST00000585133.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:non_stop_decay	5	57	2	1.42079	3.1752350000000003	4.92968	0.0526065	0.00171443	0.160978	0.0381936
chr1	86925895	86925995	153705	0	+	0.32	(0.28,0.32]	chr1	16952	97	INTRON	INTRON	HS2ST1	ENSG00000153936.18	ENST00000370550.10:ENST00000370551.8:ENST00000687893.1:ENST00000693745.1:ENST00000689904.1:ENST00000690674.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	68	2	2.91851	3.175185	3.43186	0.0130672	0.00160646	0.093385	0.0367961
chr10	59886650	59886750	4623681	0	-	0.33	(0.32,0.35]	chr10	425682	336	INTRON	INTRON	CCDC6	ENSG00000108091.11	ENST00000263102.7	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	2.30673	3.175185	4.04364	0.0584434	0.034181	0.167723	0.146815
chr2	177319058	177319156	1276404	0	-	0.326531	(0.32,0.35]	chr2	134749	7	INTRON	INTRON	NFE2L2:ENSG00000213963	ENSG00000116044.16:ENSG00000213963.6	ENST00000464747.5:ENST00000397057.6:ENST00000456746.5:ENST00000430416.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	1	30	2	2.30673	3.175185	4.04364	0.0584434	0.034181	0.167723	0.146815
chr7	129437753	129437851	3411585	0	+	0.326531	(0.32,0.35]	chr7	318888	28	INTRON	INTRON	STRIP2	ENSG00000128578.10	ENST00000249344.7:ENST00000435494.2	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	2.30673	3.175185	4.04364	0.0584434	0.034181	0.167723	0.146815
chr8	126266403	126266503	4051296	0	-	0.26	[0,0.28]	chr8	369353	1530	INTRON	INTRON	LINC00861	ENSG00000245164.9	ENST00000651482.1	lncRNA	lncRNA	lncRNA	lncRNA	1	35	2	2.27119	3.1751	4.07901	0.070351	0.0494049	0.184298	0.174117
chr11	58592068	58592168	4793873	0	+	0.43	(0.408,0.44]	chr11	443838	68	INTRON	INTRON	ZFP91	ENSG00000186660.15	ENST00000316059.7	protein_coding	protein_coding	protein_coding	protein_coding	6	111	2	2.31152	3.1750499999999997	4.03858	0.00139382	1.05823e-4	0.0341355	0.00920724
chr10	125148241	125148341	4714220	0	-	0.53	(0.515,0.57]	chr10	434933	101	INTRON	INTRON	CTBP2	ENSG00000175029.17	ENST00000337195.9:ENST00000411419.6:ENST00000494626.6:ENST00000531469.5:ENST00000460976.5:ENST00000476817.1:ENST00000530884.1:ENST00000467395.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	41	2	1.44089	3.1750049999999996	4.90912	0.0617046	0.0021669	0.193423	0.0417866
chr15	73604274	73604374	6220888	0	-	0.47	(0.44,0.476]	chr15	593920	43	INTRON	INTRON	NPTN	ENSG00000156642.17	ENST00000351217.10:ENST00000345330.9:ENST00000565325.5:ENST00000562924.5:ENST00000563691.5:ENST00000565282.5:ENST00000564551.1:ENST00000563753.1:ENST00000567198.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	51	2	1.44993	3.1749650000000003	4.9	0.045367	0.00423315	0.164236	0.0572185
chr13	26261968	26262068	5457921	0	+	0.43	(0.408,0.44]	chr13	523009	68	INTRON	INTRON	CDK8	ENSG00000132964.12	ENST00000536792.5:ENST00000381527.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	28	2	2.51492	3.17493	3.83494	0.0411442	0.0329839	0.161534	0.133816
chr15	65593027	65593127	6208214	0	-	0.42	(0.408,0.44]	chr15	592372	2	SS5_PROX	SS5_PROX:INTRON	INTS14	ENSG00000138614.16	ENST00000573314.5:ENST00000313182.7:ENST00000652388.1:ENST00000567744.5:ENST00000431261.6:ENST00000569491.5:ENST00000420799.7:ENST00000442903.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	28	2	2.51492	3.17493	3.83494	0.0411442	0.0329839	0.161534	0.133816
chr5	119163506	119163606	2460712	0	+	0.44	(0.408,0.44]	chr5	235696	84	INTRON	INTRON	DMXL1	ENSG00000172869.15	ENST00000539542.6:ENST00000311085.8	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	2.51492	3.17493	3.83494	0.0411442	0.0329839	0.161534	0.133816
chr6	136283779	136283878	3231067	0	-	0.414141	(0.408,0.44]	chr6	300408	7	INTRON	INTRON	BCLAF1	ENSG00000029363.17	ENST00000640069.1:ENST00000531224.6:ENST00000353331.8:ENST00000527536.5:ENST00000527613.5:ENST00000530767.5:ENST00000527759.5:ENST00000534269.5:ENST00000532384.5:ENST00000530429.5:ENST00000628517.2:ENST00000529826.5:ENST00000528229.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	73	2	2.82511	3.1749099999999997	3.52471	0.00189528	0.00112428	0.0402736	0.0306963
chr8	52699623	52699723	3950960	0	-	0.44	(0.408,0.44]	chr8	362390	123	INTRON	INTRON	RB1CC1	ENSG00000023287.13	ENST00000025008.10:ENST00000435644.6:ENST00000521611.1:ENST00000518710.5:ENST00000517963.1:ENST00000518211.1:ENST00000518468.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	73	2	2.82511	3.1749099999999997	3.52471	0.00189528	0.00112428	0.0402736	0.0306963
chr15	90204698	90204797	6098134	0	+	0.40404	(0.378,0.408]	chr15	580423	26	INTRON	INTRON	SEMA4B	ENSG00000185033.15	ENST00000559322.5:ENST00000559300.5:ENST00000561085.1:ENST00000332496.10:ENST00000558895.5:ENST00000559792.5:ENST00000411539.7:ENST00000560089.5:ENST00000558051.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	77	2	2.61188	3.174855	3.73783	0.0047055	4.8181e-4	0.0631419	0.0203411
chr11	46797372	46797440	4948260	0	-	0.279412	[0,0.28]	chr11	463793	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CKAP5	ENSG00000175216.15	ENST00000529230.6:ENST00000312055.9:ENST00000354558.7	protein_coding	protein_coding	protein_coding	protein_coding	2	77	2	3.04867	3.17475	3.30083	0.0104221	0.00319246	0.085482	0.0520345
chr5	10387762	10387861	2317992	0	+	0.454545	(0.44,0.476]	chr5	224637	3	INTRON	INTRON	MARCHF6	ENSG00000145495.16	ENST00000274140.10:ENST00000449913.6:ENST00000502795.5:ENST00000511802.5:ENST00000503788.5:ENST00000640713.1:ENST00000510872.5:ENST00000507863.1:ENST00000506131.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	44	2	2.22103	3.17473	4.12843	0.0337192	0.00776319	0.134145	0.0787356
chr12	64423344	64423444	5153083	0	+	0.29	(0.28,0.32]	chr12	487775	1	SS5_PROX	SS5_PROX:INTRON	XPOT	ENSG00000184575.12	ENST00000332707.10:ENST00000542958.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	56	2	1.76061	3.17468	4.58875	0.0253826	0.0230574	0.133676	0.118056
chr1	95178578	95178678	167184	0	+	0.4	(0.378,0.408]	chr1	18138	43	INTRON	INTRON	TLCD4:TLCD4-RWDD3	ENSG00000152078.10:ENSG00000271092.5	ENST00000370203.9:ENST00000604534.5:ENST00000604203.1	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	2.13703	3.174645	4.21226	0.0797592	0.0177403	0.19979	0.11319
chr12	122555985	122556085	5240884	0	+	0.39	(0.378,0.408]	chr12	497659	39	INTRON	INTRON	KNTC1	ENSG00000184445.12	ENST00000450485.6:ENST00000333479.12	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	2.13703	3.174645	4.21226	0.0797592	0.0177403	0.19979	0.11319
chr16	57193433	57193532	6361357	0	+	0.383838	(0.378,0.408]	chr16	610647	60	INTRON	INTRON	RSPRY1	ENSG00000159579.14	ENST00000562439.5:ENST00000564435.5:ENST00000562959.1:ENST00000568505.6:ENST00000566352.1:ENST00000394420.9:ENST00000537866.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	27	2	2.13703	3.174645	4.21226	0.0797592	0.0177403	0.19979	0.11319
chr16	69385050	69385130	6508195	0	-	0.4	(0.378,0.408]	chr16	630132	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TERF2	ENSG00000132604.11	ENST00000254942.8:ENST00000566750.5:ENST00000569611.6:ENST00000567296.6:ENST00000569280.1:ENST00000567841.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	27	2	2.13703	3.174645	4.21226	0.0797592	0.0177403	0.19979	0.11319
chr16	89875926	89876023	6422456	0	+	0.381443	(0.378,0.408]	chr16	616715	8	INTRON	INTRON	TCF25	ENSG00000141002.20	ENST00000640279.1:ENST00000263347.11:ENST00000263346.13:ENST00000561585.1:ENST00000561958.5:ENST00000614813.4:ENST00000565196.5:ENST00000564652.5:ENST00000568412.5:ENST00000563406.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	27	2	2.13703	3.174645	4.21226	0.0797592	0.0177403	0.19979	0.11319
chr3	46972777	46972876	1679992	0	-	0.393939	(0.378,0.408]	chr3	171437	63	INTRON	INTRON	CCDC12	ENSG00000160799.12	ENST00000425441.5:ENST00000683445.1:ENST00000292314.6:ENST00000605358.5:ENST00000488069.5:ENST00000603885.5:ENST00000446836.5:ENST00000494655.5:ENST00000604164.5:ENST00000604181.1:ENST00000605875.1:ENST00000460035.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	27	2	2.13703	3.174645	4.21226	0.0797592	0.0177403	0.19979	0.11319
chr4	129028913	129029013	2240634	0	-	0.4	(0.378,0.408]	chr4	219291	247	INTRON	INTRON	SCLT1	ENSG00000151466.12	ENST00000651532.1:ENST00000281142.10:ENST00000503215.5:ENST00000439369.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	27	2	2.13703	3.174645	4.21226	0.0797592	0.0177403	0.19979	0.11319
chr5	139300664	139300764	2499450	0	+	0.52	(0.515,0.57]	chr5	238913	8	INTRON	INTRON	MATR3	ENSG00000280987.4:ENSG00000015479.20	ENST00000509990.5:ENST00000506147.5:ENST00000512107.5:ENST00000361059.7:ENST00000394800.6:ENST00000502929.5:ENST00000504203.5:ENST00000514694.5:ENST00000509644.5:ENST00000505016.2:ENST00000502394.1:ENST00000512876.5:ENST00000513678.5:ENST00000513121.1:ENST00000504045.5:ENST00000504311.5:ENST00000502499.5:ENST00000510056.5:ENST00000511249.5:ENST00000394805.8:ENST00000507860.1:ENST00000509918.5:ENST00000503811.5:ENST00000511978.5:ENST00000618441.5:ENST00000508689.1:ENST00000514528.5:ENST00000504643.5:ENST00000514488.1:ENST00000503340.1:ENST00000504023.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	100	2	3.12677	3.174475	3.22218	2.98683e-4	7.69212e-5	0.0160416	0.00735438
chr3	28266572	28266672	1390797	0	+	0.5	(0.476,0.515]	chr3	145643	28	INTRON	INTRON	CMC1	ENSG00000187118.14	ENST00000477739.1:ENST00000423894.5:ENST00000466830.6:ENST00000334841.10:ENST00000418849.2:ENST00000396610.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	54	2	3.10264	3.1744700000000003	3.2463	0.00543163	0.00262374	0.0645052	0.0470772
chr5	151783392	151783491	2521909	0	+	0.414141	(0.408,0.44]	chr5	241290	53	INTRON	INTRON	G3BP1	ENSG00000145907.16	ENST00000523519.5:ENST00000520578.6:ENST00000627077.2:ENST00000678976.1:ENST00000677408.1:ENST00000678070.1:ENST00000678964.1:ENST00000678925.1:ENST00000394123.7:ENST00000676978.1:ENST00000679289.1:ENST00000677493.1:ENST00000676644.1:ENST00000677757.1:ENST00000522761.6:ENST00000677909.1:ENST00000676827.1:ENST00000520177.6:ENST00000676634.1:ENST00000678854.1:ENST00000677602.1:ENST00000519832.1:ENST00000518726.5:ENST00000676911.1:ENST00000356245.8:ENST00000678646.1:ENST00000677381.1:ENST00000678904.1:ENST00000678910.1:ENST00000678101.1:ENST00000677105.1:ENST00000676813.1:ENST00000522367.6:ENST00000517947.5:ENST00000507878.7:ENST00000520006.2:ENST00000678369.1:ENST00000677433.1:ENST00000678564.1:ENST00000677252.1:ENST00000677369.1:ENST00000677284.1:ENST00000676894.1:ENST00000677923.1:ENST00000677323.1:ENST00000522666.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	80	2	2.00228	3.1744499999999998	4.34662	0.0389732	9.84598e-6	0.143072	0.00227957
chr7	30629264	30629363	3301803	0	+	0.383838	(0.378,0.408]	chr7	306608	7	EXON_MRNA	EXON_MRNA:INTRON	GARS1	ENSG00000106105.15	ENST00000675051.1:ENST00000470392.2:ENST00000674643.1:ENST00000675529.1:ENST00000674807.1:ENST00000675810.1:ENST00000676088.1:ENST00000674815.1:ENST00000676403.1:ENST00000485784.2:ENST00000676210.1:ENST00000389266.8:ENST00000675693.1:ENST00000676259.1:ENST00000675651.1:ENST00000674616.1:ENST00000674737.1:ENST00000675859.1:ENST00000676140.1:ENST00000674969.1:ENST00000676164.1:ENST00000675886.1:ENST00000444666.6:ENST00000675587.1:ENST00000674851.1:ENST00000675863.1:ENST00000465748.2:ENST00000496643.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	49	2	1.84831	3.174435	4.50056	0.0172621	0.015974	0.111749	0.101453
chr12	132900809	132900908	5450983	0	-	0.50505	(0.476,0.515]	chr12	522254	12	INTRON	INTRON	CHFR	ENSG00000072609.18	ENST00000541817.5:ENST00000540537.5:ENST00000542714.5:ENST00000536932.5:ENST00000499045.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	72	2	2.89165	3.17438	3.45711	0.00142068	0.00140905	0.034662	0.0340865
chr2	61518123	61518221	1131018	0	-	0.469388	(0.44,0.476]	chr2	121606	33	INTRON	INTRON	XPO1	ENSG00000082898.19	ENST00000676553.1:ENST00000677556.1:ENST00000677814.1:ENST00000676771.1:ENST00000677803.1:ENST00000677239.1:ENST00000678790.1:ENST00000677928.1:ENST00000678182.1:ENST00000677150.1:ENST00000678172.1:ENST00000678360.1:ENST00000678081.1:ENST00000676889.1:ENST00000676783.1:ENST00000679035.1:ENST00000677422.1:ENST00000677417.1:ENST00000677813.1:ENST00000676999.1:ENST00000676667.1:ENST00000678263.1:ENST00000678877.1:ENST00000677933.1:ENST00000680228.1:ENST00000677289.1:ENST00000677190.1:ENST00000401558.7:ENST00000428210.5:ENST00000677290.1:ENST00000677850.1:ENST00000451765.6:ENST00000676789.1:ENST00000678741.1:ENST00000404992.6:ENST00000406957.5:ENST00000443240.5:ENST00000476585.5:ENST00000468259.1:ENST00000420673.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	239	2	2.61076	3.17438	3.738	1.60073e-4	4.07932e-7	0.0115803	3.32756e-4
chr1	112917562	112917658	523751	0	-	0.416667	(0.408,0.44]	chr1	61668	5	CDS	CDS:EXON_MRNA	SLC16A1	ENSG00000155380.13	ENST00000679803.1:ENST00000369626.8:ENST00000443580.6:ENST00000538576.5:ENST00000429288.2:ENST00000458229.6:ENST00000679846.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	151	2	2.21874	3.1743750000000004	4.13001	0.00286408	1.05444e-6	0.0474836	5.87735e-4
chr12	132087919	132088019	5250219	0	+	0.33	(0.32,0.35]	chr12	499286	1	SS3_PROX	SS3_PROX:INTRON	EP400P1	ENSG00000185684.16	ENST00000407361.8:ENST00000446190.5:ENST00000690966.1:ENST00000689047.1:ENST00000454179.7:ENST00000689533.1:ENST00000688036.1:ENST00000688136.1:ENST00000488030.5:ENST00000389560.6:ENST00000689403.1:ENST00000443539.6:ENST00000392352.5:ENST00000613241.1:ENST00000539205.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	4	101	2	2.62513	3.1742749999999997	3.72342	0.00156724	6.58762e-4	0.0365592	0.0234233
chr3	138804452	138804552	1831197	0	-	0.41	(0.408,0.44]	chr3	184062	75	INTRON	INTRON	PIK3CB	ENSG00000051382.9	ENST00000674063.1:ENST00000477593.5:ENST00000462898.5:ENST00000483968.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	98	2	3.0946	3.174215	3.2538299999999998	7.51561e-4	2.37059e-4	0.0251179	0.0136195
chr1	193018485	193018566	612443	0	-	0.333333	(0.32,0.35]	chr1	72423	2	UTR3	UTR3:EXON_MRNA:INTRON	UCHL5	ENSG00000116750.14	ENST00000367455.8:ENST00000367454.6:ENST00000420791.5:ENST00000449480.5:ENST00000367450.7:ENST00000367451.8:ENST00000367449.5:ENST00000367448.5	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	2.40308	3.174185	3.94529	0.0693433	0.0417732	0.184298	0.161736
chr10	1077306	1077406	4379608	0	+	0.33	(0.32,0.35]	chr10	403920	24	INTRON	INTRON	WDR37	ENSG00000047056.17	ENST00000358220.5:ENST00000263150.9:ENST00000381329.5:ENST00000650072.1:ENST00000436154.1	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	2.40308	3.174185	3.94529	0.0693433	0.0417732	0.184298	0.161736
chr10	104006135	104006235	4517153	0	+	0.33	(0.32,0.35]	chr10	416594	1	SS5_PROX	SS5_PROX:INTRON	SLK	ENSG00000065613.15	ENST00000369755.4:ENST00000335753.8	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	2.40308	3.174185	3.94529	0.0693433	0.0417732	0.184298	0.161736
chr16	21410733	21410833	6460408	0	-	0.33	(0.32,0.35]	chr16	623169	4	SS5_PROX	SS5_PROX:INTRON	NPIPB3	ENSG00000169246.16	ENST00000504841.6:ENST00000419180.6:ENST00000448012.6:ENST00000542953.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	27	2	2.40308	3.174185	3.94529	0.0693433	0.0417732	0.184298	0.161736
chr17	62033105	62033195	6810557	0	-	0.333333	(0.32,0.35]	chr17	672934	8	INTRON	INTRON	MED13	ENSG00000108510.10	ENST00000397786.7:ENST00000578132.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	27	2	2.40308	3.174185	3.94529	0.0693433	0.0417732	0.184298	0.161736
chr18	12647013	12647113	6949183	0	-	0.35	(0.32,0.35]	chr18	687396	108	INTRON	INTRON	SPIRE1	ENSG00000134278.16	ENST00000409402.9:ENST00000410092.7:ENST00000309836.9:ENST00000453447.6:ENST00000449797.5:ENST00000497844.6:ENST00000462226.1	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	2.40308	3.174185	3.94529	0.0693433	0.0417732	0.184298	0.161736
chr18	73229034	73229133	6988263	0	-	0.323232	(0.32,0.35]	chr18	691704	279	INTRON	INTRON	LINC02864	ENSG00000263711.6	ENST00000584544.5:ENST00000581011.5:ENST00000581862.6:ENST00000669547.1:ENST00000661525.1:ENST00000583405.5	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	1	27	2	2.40308	3.174185	3.94529	0.0693433	0.0417732	0.184298	0.161736
chr21	45091069	45091169	7418017	0	+	0.34	(0.32,0.35]	chr21	756262	159	INTRON	INTRON	ADARB1	ENSG00000197381.17	ENST00000462214.5:ENST00000460734.5:ENST00000348831.9:ENST00000389861.7:ENST00000389863.8:ENST00000492414.5:ENST00000496664.5:ENST00000437626.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	27	2	2.40308	3.174185	3.94529	0.0693433	0.0417732	0.184298	0.161736
chr5	119116836	119116934	2460228	0	+	0.336735	(0.32,0.35]	chr5	235625	1	INTRON	INTRON	DMXL1	ENSG00000172869.15	ENST00000539542.6:ENST00000503802.5:ENST00000311085.8:ENST00000514151.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	27	2	2.40308	3.174185	3.94529	0.0693433	0.0417732	0.184298	0.161736
chr8	73857269	73857369	3972044	0	-	0.33	(0.32,0.35]	chr8	364247	264	INTRON	INTRON	ENSG00000258677:UBE2W	ENSG00000258677.2:ENSG00000104343.21	ENST00000358757.5:ENST00000602593.6:ENST00000517608.5:ENST00000650817.1:ENST00000422906.6:ENST00000419880.7:ENST00000651945.1:ENST00000519277.5:ENST00000519255.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	27	2	2.40308	3.174185	3.94529	0.0693433	0.0417732	0.184298	0.161736
chr9	100448779	100448878	4179009	0	+	0.333333	(0.32,0.35]	chr9	380960	32	INTRON	INTRON	MSANTD3:MSANTD3-TMEFF1	ENSG00000066697.15:ENSG00000251349.3	ENST00000395067.7:ENST00000374885.5:ENST00000622639.4:ENST00000374886.7:ENST00000613183.1:ENST00000489377.1:ENST00000502978.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	27	2	2.40308	3.174185	3.94529	0.0693433	0.0417732	0.184298	0.161736
chr1	50784504	50784604	450495	0	-	0.33	(0.32,0.35]	chr1	54249	394	INTRON	INTRON	FAF1	ENSG00000185104.21	ENST00000396153.7:ENST00000487898.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	84	2	2.89475	3.17418	3.45361	0.00193809	0.00160352	0.0399255	0.0367961
chr22	50401009	50401108	7544771	0	+	0.313131	(0.28,0.32]	chr22	771041	65	INTRON	INTRON	PPP6R2	ENSG00000100239.16	ENST00000359139.7:ENST00000395741.7:ENST00000612753.5:ENST00000395744.7:ENST00000216061.9	protein_coding	protein_coding	protein_coding	protein_coding	4	110	2	2.56291	3.17413	3.78535	0.00227849	6.21154e-4	0.0437013	0.0229151
chr14	102726901	102727000	5823891	0	+	0.414141	(0.408,0.44]	chr14	552550	5	UTR3	UTR3:EXON_MRNA	RCOR1	ENSG00000089902.10	ENST00000262241.7	protein_coding	protein_coding	protein_coding	protein_coding	5	100	2	2.38802	3.174105	3.96019	0.00178825	1.56132e-4	0.0392749	0.0113571
chr5	160114707	160114807	2759753	0	-	0.45	(0.44,0.476]	chr5	260442	57	INTRON	INTRON	PWWP2A	ENSG00000170234.13	ENST00000456329.7:ENST00000523662.1:ENST00000307063.9:ENST00000520662.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	178	2	2.67072	3.17409	3.67746	3.07975e-4	2.82837e-6	0.0161519	0.001075
chr2	241669185	241669279	1055800	0	+	0.425532	(0.408,0.44]	chr2	112537	1	INTRON	INTRON	ATG4B	ENSG00000168397.17	ENST00000405546.7:ENST00000402096.5:ENST00000494465.5:ENST00000404914.8:ENST00000482507.5:ENST00000344376.9:ENST00000428861.1:ENST00000460211.5:ENST00000475693.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	55	2	2.84077	3.1740399999999998	3.50731	0.0132196	8.5918e-4	0.0940535	0.0265787
chr3	134250022	134250122	1823657	0	-	0.41	(0.408,0.44]	chr3	183485	2	SS5_PROX	SS5_PROX:INTRON	RYK	ENSG00000163785.13	ENST00000623711.4:ENST00000460933.5:ENST00000620660.4	protein_coding	protein_coding	protein_coding	protein_coding	2	55	2	2.84077	3.1740399999999998	3.50731	0.0132196	8.5918e-4	0.0940535	0.0265787
chr10	42365612	42365711	4603432	0	-	0.555556	(0.515,0.57]	chr10	424089	42	INTRON	INTRON	ENSG00000215146	ENSG00000215146.5	ENST00000609841.1:ENST00000650175.1:ENST00000609034.1:ENST00000609502.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	3	38	2	1.49871	3.174035	4.84936	0.0770828	0.00146032	0.196285	0.0349875
chr21	42855126	42855181	7467662	0	-	0.254545	[0,0.28]	chr21	760949	1	INTRON	INTRON	WDR4	ENSG00000160193.12	ENST00000330317.6:ENST00000476326.5:ENST00000398208.3:ENST00000492742.5:ENST00000479429.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	145	2	3.0385	3.17402	3.30954	0.00116412	6.69788e-4	0.0314524	0.0236302
chr1	204554744	204554844	297816	0	+	0.37	(0.35,0.378]	chr1	34331	52	UTR3	UTR3:EXON_MRNA	MDM4	ENSG00000198625.14	ENST00000367183.7:ENST00000391947.6:ENST00000454264.6:ENST00000612738.4:ENST00000614459.4:ENST00000616250.4:ENST00000367182.8	protein_coding	protein_coding	protein_coding	protein_coding	10	203	2	2.51899	3.174015	3.82904	1.28006e-4	2.25301e-5	0.00973193	0.00386909
chr1	35847187	35847286	70390	0	+	0.333333	(0.32,0.35]	chr1	9004	51	INTRON	INTRON	AGO4	ENSG00000134698.11	ENST00000373210.4:ENST00000488778.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	50	2	1.45026	3.17397	4.89768	0.0622478	0.00793135	0.194723	0.076155
chr1	235279541	235279640	663376	0	-	0.333333	(0.32,0.35]	chr1	78552	184	INTRON	INTRON	ARID4B	ENSG00000054267.22	ENST00000349213.7:ENST00000366603.6:ENST00000264183.9:ENST00000421364.5:ENST00000491632.5:ENST00000418304.1:ENST00000466653.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	44	2	1.72898	3.173935	4.61889	0.0425433	0.0166646	0.161951	0.102621
chr15	78880879	78880979	6069623	0	+	0.33	(0.32,0.35]	chr15	578203	3	SS5_PROX	SS5_PROX:INTRON	MORF4L1	ENSG00000185787.15	ENST00000379535.8:ENST00000559697.5:ENST00000331268.9:ENST00000557961.5:ENST00000559930.5:ENST00000426013.7:ENST00000558746.5:ENST00000558893.5:ENST00000558830.5:ENST00000558522.5:ENST00000559619.5:ENST00000559345.5:ENST00000561171.5:ENST00000558502.5:ENST00000559258.5:ENST00000559690.5:ENST00000559158.5:ENST00000560422.5:ENST00000558539.5:ENST00000559244.5:ENST00000559751.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	44	2	1.72898	3.173935	4.61889	0.0425433	0.0166646	0.161951	0.102621
chr1	225922853	225922947	646266	0	-	0.617021	(0.57,1]	chr1	76564	6	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	PYCR2	ENSG00000143811.20	ENST00000612039.4:ENST00000478402.5:ENST00000343818.11:ENST00000446534.1:ENST00000489681.5:ENST00000472798.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	22	2	1.9042	3.1739300000000004	4.44366	0.0476976	0.00210922	0.153019	0.0425419
chr5	132293285	132293384	2721851	0	-	0.585859	(0.57,1]	chr5	255859	120	INTRON	INTRON	P4HA2	ENSG00000072682.20	ENST00000431054.5:ENST00000471826.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	22	2	1.9042	3.1739300000000004	4.44366	0.0476976	0.00210922	0.153019	0.0425419
chr7	127925763	127925863	3405155	0	+	0.49	(0.476,0.515]	chr7	318161	206	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000465900.5:ENST00000486037.1:ENST00000484767.5:ENST00000492840.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	72	2	2.93046	3.17387	3.41728	0.00165726	0.00118985	0.0369207	0.031662
chr5	69172251	69172351	2380030	0	+	0.51	(0.476,0.515]	chr5	229163	4	INTRON	INTRON	CCNB1	ENSG00000134057.15	ENST00000506572.5:ENST00000256442.10:ENST00000508407.5:ENST00000505500.5:ENST00000503507.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	97	2	2.90668	3.173855	3.44103	0.00164243	8.64735e-5	0.0369207	0.00783027
chr10	125132116	125132215	4714055	0	-	0.353535	(0.35,0.378]	chr10	434919	89	INTRON	INTRON	CTBP2	ENSG00000175029.17	ENST00000337195.9:ENST00000411419.6:ENST00000494626.6:ENST00000531469.5:ENST00000460976.5:ENST00000476817.1:ENST00000530884.1:ENST00000530930.1:ENST00000467395.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	60	2	2.72497	3.173845	3.62272	0.0198266	5.64719e-4	0.109608	0.021704
chr11	31476224	31476321	4938904	0	-	0.319588	(0.28,0.32]	chr11	462591	21	INTRON	INTRON	IMMP1L	ENSG00000148950.11	ENST00000532287.6:ENST00000534812.5:ENST00000526776.5:ENST00000278200.5:ENST00000648582.1:ENST00000533642.1:ENST00000527184.5:ENST00000528161.5:ENST00000532624.5:ENST00000529749.5:ENST00000530023.5:ENST00000531693.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	38	2	1.83771	3.1737599999999997	4.50981	0.0591725	0.0275554	0.189982	0.123904
chr12	101406610	101406710	5398084	0	-	0.3	(0.28,0.32]	chr12	514856	2	SS5_PROX	SS5_PROX:INTRON	ARL1	ENSG00000120805.14	ENST00000261636.13:ENST00000539055.5:ENST00000536227.5:ENST00000551688.1:ENST00000551828.5:ENST00000551671.5:ENST00000551092.5:ENST00000549283.1:ENST00000549302.1:ENST00000548070.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	38	2	1.83771	3.1737599999999997	4.50981	0.0591725	0.0275554	0.189982	0.123904
chr14	55642835	55642931	5727654	0	+	0.291667	(0.28,0.32]	chr14	543619	7	INTRON	INTRON	KTN1	ENSG00000126777.18	ENST00000395314.8:ENST00000438792.6:ENST00000459737.5:ENST00000395308.5:ENST00000395311.5:ENST00000413890.6:ENST00000395309.7:ENST00000553360.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	38	2	1.83771	3.1737599999999997	4.50981	0.0591725	0.0275554	0.189982	0.123904
chr16	11716821	11716921	6444935	0	-	0.3	(0.28,0.32]	chr16	620808	127	INTRON	INTRON	TXNDC11	ENSG00000153066.13	ENST00000283033.10:ENST00000356957.7:ENST00000575591.1:ENST00000576969.5:ENST00000571882.1:ENST00000573174.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	38	2	1.83771	3.1737599999999997	4.50981	0.0591725	0.0275554	0.189982	0.123904
chr19	15308642	15308742	7147167	0	-	0.31	(0.28,0.32]	chr19	721965	283	INTRON	INTRON	BRD4	ENSG00000141867.19	ENST00000679869.1:ENST00000360016.9:ENST00000594841.5:ENST00000597315.5:ENST00000601941.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	38	2	1.83771	3.1737599999999997	4.50981	0.0591725	0.0275554	0.189982	0.123904
chr19	20645196	20645295	7157979	0	-	0.292929	(0.28,0.32]	chr19	723626	6	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	ZNF626	ENSG00000188171.17	ENST00000601440.6:ENST00000595405.1:ENST00000291750.6	protein_coding	protein_coding	protein_coding	protein_coding	2	38	2	1.83771	3.1737599999999997	4.50981	0.0591725	0.0275554	0.189982	0.123904
chr19	4706270	4706370	7121376	0	-	0.41	(0.408,0.44]	chr19	716597	3	SS3_PROX	SS3_PROX:INTRON	DPP9	ENSG00000142002.18	ENST00000594671.5:ENST00000262960.14:ENST00000597145.5:ENST00000598800.5:ENST00000597849.5:ENST00000601764.5:ENST00000597726.5:ENST00000600621.5:ENST00000600556.5:ENST00000602161.5:ENST00000598360.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	55	2	3.14706	3.1737	3.20034	0.00398025	0.00382411	0.0562562	0.0549214
chr17	27121208	27121308	6580037	0	+	0.26	[0,0.28]	chr17	639586	244	INTRON	INTRON	ENSG00000285822	ENSG00000285822.1	ENST00000649401.1	lncRNA	lncRNA	lncRNA	lncRNA	6	162	2	1.94959	3.1736549999999997	4.39772	0.0135571	2.3634e-5	0.0949306	0.00380885
chr9	97008567	97008667	4298939	0	-	0.45	(0.44,0.476]	chr9	395262	353	INTRON	INTRON	MFSD14C	ENSG00000196312.15	ENST00000647176.1:ENST00000645073.1:ENST00000637864.1:ENST00000652726.1:ENST00000637811.1:ENST00000650909.1	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript:transcribed_unprocessed_pseudogene	2	39	2	2.24189	3.1736450000000005	4.1054	0.0220205	0.0193405	0.123836	0.108861
chr1	39841350	39841448	427833	0	-	0.346939	(0.32,0.35]	chr1	51960	34	UTR3	UTR3:EXON_MRNA	TRIT1	ENSG00000043514.17	ENST00000316891.10:ENST00000648678.1:ENST00000537440.5:ENST00000372818.5:ENST00000462797.5:ENST00000441669.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	87	2	2.54408	3.17364	3.8032	0.00659077	4.69031e-4	0.0737338	0.0200452
chr6	15460657	15460757	2825096	0	+	0.43	(0.408,0.44]	chr6	265210	81	INTRON	INTRON	JARID2	ENSG00000008083.14	ENST00000341776.7:ENST00000397311.4	protein_coding	protein_coding	protein_coding	protein_coding	2	58	2	2.51492	3.173545	3.83217	0.0329839	1.79883e-4	0.133816	0.0116696
chr2	171555895	171555992	917668	0	+	0.391753	(0.378,0.408]	chr2	101061	12	UTR3	UTR3:EXON_MRNA	CYBRD1	ENSG00000071967.12	ENST00000321348.9:ENST00000375252.3	protein_coding	protein_coding	protein_coding	protein_coding	3	76	2	2.47752	3.173515	3.86951	0.0092831	1.55755e-4	0.0817766	0.0106835
chr11	62883264	62883347	4799616	0	+	0.433735	(0.408,0.44]	chr11	444828	3	SS5_PROX	SS5_PROX:INTRON	SLC3A2	ENSG00000168003.18	ENST00000680729.1:ENST00000680002.1:ENST00000681467.1:ENST00000377890.6:ENST00000538084.2:ENST00000681569.1:ENST00000680725.1:ENST00000377891.6:ENST00000377889.6:ENST00000681215.1:ENST00000535296.5:ENST00000680631.1:ENST00000544377.2:ENST00000680610.1:ENST00000680297.1:ENST00000680134.1:ENST00000681232.1:ENST00000681657.1:ENST00000541425.6:ENST00000679908.1:ENST00000681563.1:ENST00000338663.12:ENST00000680654.1:ENST00000681107.1:ENST00000541649.2:ENST00000538682.6:ENST00000536981.6:ENST00000539891.6:ENST00000679594.1:ENST00000535768.2:ENST00000537508.6:ENST00000537839.5:ENST00000546253.5:ENST00000457660.6:ENST00000546312.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	15	239	2	2.30427	3.1734549999999997	4.04264	1.10633e-4	4.64757e-6	0.00892808	0.00158097
chr16	21842786	21842885	6461651	0	-	0.454545	(0.44,0.476]	chr16	623408	14	INTRON	INTRON	NPIPB4	ENSG00000185864.18	ENST00000415645.6:ENST00000682606.1:ENST00000165086.8:ENST00000542133.5:ENST00000543660.1:ENST00000541329.1:ENST00000614197.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	149	2	1.70373	3.17339	4.64305	0.00843049	1.46612e-6	0.0776969	7.23574e-4
chr16	257812	257909	6271848	0	+	0.43299	(0.408,0.44]	chr16	598403	28	INTRON	INTRON	FAM234A	ENSG00000167930.17	ENST00000301679.7:ENST00000666018.1:ENST00000653392.1:ENST00000659283.1:ENST00000654053.1:ENST00000419173.5:ENST00000399932.8:ENST00000438220.5:ENST00000453430.5:ENST00000449945.5:ENST00000420046.5:ENST00000301678.7:ENST00000420500.5:ENST00000600536.1:ENST00000496874.1:ENST00000421000.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	36	2	1.81572	3.1733	4.53088	0.0626779	0.00669275	0.175915	0.0738715
chr20	10598274	10598374	7241510	0	+	0.44	(0.408,0.44]	chr20	735182	2	SS3_PROX	SS3_PROX:INTRON	SLX4IP	ENSG00000149346.15	ENST00000334534.10	protein_coding	protein_coding	protein_coding	protein_coding	2	36	2	1.81572	3.1733	4.53088	0.0626779	0.00669275	0.175915	0.0738715
chr8	31083011	31083104	3728434	0	+	0.344086	(0.32,0.35]	chr8	346570	14	INTRON	INTRON	WRN	ENSG00000165392.11	ENST00000650667.1:ENST00000298139.7:ENST00000651642.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	101	2	2.73679	3.173235	3.60968	0.00105196	9.3145e-4	0.029592	0.0278746
chr1	207340292	207340390	303460	0	+	0.204082	[0,0.28]	chr1	34921	9	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	CD55	ENSG00000196352.18	ENST00000695822.1:ENST00000695823.1:ENST00000695826.1:ENST00000695825.1:ENST00000695824.1:ENST00000367063.6:ENST00000695827.1:ENST00000695828.1:ENST00000645323.1:ENST00000391921.9:ENST00000367064.9:ENST00000314754.12:ENST00000644836.1:ENST00000476590.1:ENST00000465534.5:ENST00000618707.2:ENST00000635614.2:ENST00000695831.1:ENST00000634386.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	172	2	2.52346	3.1731949999999998	3.82293	0.00478297	2.5481e-5	0.0602209	0.00396098
chr8	101203530	101203630	4006267	0	-	0.35	(0.32,0.35]	chr8	366737	13	UTR5	UTR5:EXON_MRNA:INTRON	ZNF706	ENSG00000120963.12	ENST00000520984.5:ENST00000311212.9:ENST00000519744.5:ENST00000517844.5:ENST00000520347.5:ENST00000519882.5:ENST00000521272.5:ENST00000518336.5:ENST00000523146.1:ENST00000519916.1:ENST00000523922.1:ENST00000520454.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	161	2	2.00881	3.1731949999999998	4.33758	0.00235992	3.80568e-5	0.0445991	0.00525714
chr1	8578797	8578897	371388	0	-	0.33	(0.32,0.35]	chr1	43517	209	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000400907.6:ENST00000656437.1:ENST00000659924.1:ENST00000480342.5:ENST00000469251.1:ENST00000514428.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	63	2	3.16237	3.173145	3.18392	0.00550276	0.00379806	0.0648867	0.0562562
chr5	131529105	131529205	2718104	0	-	0.34	(0.32,0.35]	chr5	255585	72	INTRON	INTRON	RAPGEF6	ENSG00000158987.22	ENST00000509018.6:ENST00000507093.5:ENST00000296859.10:ENST00000627212.2:ENST00000308008.10:ENST00000515170.5:ENST00000510071.5:ENST00000514179.5:ENST00000513227.5:ENST00000504575.5:ENST00000504039.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	63	2	3.16237	3.173145	3.18392	0.00550276	0.00379806	0.0648867	0.0562562
chr7	92738567	92738667	3572279	0	-	0.48	(0.476,0.515]	chr7	332804	124	INTRON	INTRON	CDK6	ENSG00000105810.10	ENST00000424848.3:ENST00000265734.8	protein_coding	protein_coding	protein_coding	protein_coding	2	55	2	3.01197	3.173065	3.33416	0.00633162	0.00230489	0.0722266	0.0428247
chr12	131938474	131938573	5250098	0	+	0.343434	(0.32,0.35]	chr12	499261	37	INTRON	INTRON	PUS1	ENSG00000177192.14	ENST00000443358.6:ENST00000322060.9:ENST00000376649.8:ENST00000542167.2:ENST00000538037.5:ENST00000535067.5:ENST00000537484.1	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	2.57263	3.173035	3.77344	0.0596635	0.0312297	0.189982	0.13151
chr2	168486510	168486610	902462	0	+	0.34	(0.32,0.35]	chr2	99760	295	INTRON	INTRON	CERS6	ENSG00000172292.15	ENST00000392687.4:ENST00000305747.11	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	2.57263	3.173035	3.77344	0.0596635	0.0312297	0.189982	0.13151
chr6	21231331	21231429	2835367	0	+	0.326531	(0.32,0.35]	chr6	265723	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	CDKAL1	ENSG00000145996.11	ENST00000274695.8:ENST00000378610.1:ENST00000476517.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	32	2	2.57263	3.173035	3.77344	0.0596635	0.0312297	0.189982	0.13151
chr11	12989355	12989455	4916075	0	-	0.35	(0.32,0.35]	chr11	460688	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	LINC00958	ENSG00000251381.8	ENST00000658243.1:ENST00000527945.2:ENST00000671253.1:ENST00000653758.1:ENST00000662291.1:ENST00000671577.1:ENST00000663902.1:ENST00000653958.1:ENST00000526388.2:ENST00000504230.2:ENST00000531402.6:ENST00000534477.6:ENST00000653981.1:ENST00000667588.1	lncRNA	lncRNA	lncRNA	lncRNA	9	242	2	3.05661	3.172905	3.2892	6.42728e-5	1.51923e-5	0.00711194	0.00293131
chr2	113245290	113245390	853146	0	+	0.54	(0.515,0.57]	chr2	95735	40	INTRON	INTRON	PAX8-AS1	ENSG00000189223.15	ENST00000556070.6:ENST00000623306.3:ENST00000451179.6:ENST00000653055.1:ENST00000665814.1:ENST00000669027.1:ENST00000617509.4:ENST00000616073.5:ENST00000422956.6:ENST00000661674.1:ENST00000617278.2:ENST00000654203.1:ENST00000663248.1:ENST00000333145.9:ENST00000665717.1:ENST00000624706.3:ENST00000445745.6:ENST00000436293.6:ENST00000661255.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	2	31	2	2.26012	3.1727499999999997	4.08538	0.0253843	0.0160033	0.12011	0.109464
chr5	154874499	154874596	2527847	0	+	0.536082	(0.515,0.57]	chr5	241775	15	INTRON	INTRON	CNOT8	ENSG00000155508.14	ENST00000523698.5:ENST00000517876.5:ENST00000403027.6:ENST00000521450.5:ENST00000524105.5:ENST00000285896.11:ENST00000521583.5:ENST00000520671.5:ENST00000519404.5:ENST00000521729.5:ENST00000518775.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	31	2	2.26012	3.1727499999999997	4.08538	0.0253843	0.0160033	0.12011	0.109464
chr7	99487761	99487861	3583989	0	-	0.57	(0.515,0.57]	chr7	333867	4	INTRON	INTRON	ZNF394	ENSG00000160908.15	ENST00000651364.1:ENST00000462024.1	protein_coding	processed_transcript	protein_coding	processed_transcript	2	31	2	2.26012	3.1727499999999997	4.08538	0.0253843	0.0160033	0.12011	0.109464
chr9	19287616	19287712	4105419	0	+	0.520833	(0.515,0.57]	chr9	373908	2	INTRON	INTRON	DENND4C	ENSG00000137145.21	ENST00000602925.5:ENST00000434457.7	protein_coding	protein_coding	protein_coding	protein_coding	2	31	2	2.26012	3.1727499999999997	4.08538	0.0253843	0.0160033	0.12011	0.109464
chr9	128073876	128073976	4202488	0	+	0.52	(0.515,0.57]	chr9	383913	49	INTRON	INTRON	SLC25A25	ENSG00000148339.13	ENST00000373068.6:ENST00000373069.10	protein_coding	protein_coding	protein_coding	protein_coding	2	31	2	2.26012	3.1727499999999997	4.08538	0.0253843	0.0160033	0.12011	0.109464
chr19	12942840	12942938	7022513	0	+	0.530612	(0.515,0.57]	chr19	698295	15	INTRON	INTRON	CALR	ENSG00000179218.15	ENST00000316448.10:ENST00000586967.2:ENST00000586760.2:ENST00000680816.1:ENST00000588454.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	128	2	2.16157	3.17262	4.18367	5.46454e-4	2.93017e-5	0.0212751	0.00449807
chr12	50930543	50930641	5140294	0	+	0.5	(0.476,0.515]	chr12	484759	5	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	METTL7A	ENSG00000185432.12	ENST00000548553.1:ENST00000547104.1:ENST00000332160.5:ENST00000550097.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	71	2	1.10747	3.17258	5.23769	0.0788376	5.17244e-4	0.198814	0.0203753
chr11	59642575	59642673	4954674	0	-	0.44898	(0.44,0.476]	chr11	465258	3	SS5_PROX	SS5_PROX:INTRON	PATL1	ENSG00000166889.14	ENST00000300146.10	protein_coding	protein_coding	protein_coding	protein_coding	2	33	2	2.00609	3.1725399999999997	4.33899	0.0360127	0.0206616	0.152355	0.110999
chr11	111756147	111756245	5041649	0	-	0.44898	(0.44,0.476]	chr11	474824	3	INTRON	INTRON	PPP2R1B	ENSG00000137713.16	ENST00000311129.9:ENST00000426998.6:ENST00000527614.6:ENST00000534521.5:ENST00000341980.10:ENST00000393055.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	33	2	2.00609	3.1725399999999997	4.33899	0.0360127	0.0206616	0.152355	0.110999
chr13	28148282	28148382	5460926	0	+	0.46	(0.44,0.476]	chr13	523235	88	INTRON	INTRON	PAN3	ENSG00000152520.14	ENST00000503791.5:ENST00000380958.8:ENST00000399613.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	33	2	2.00609	3.1725399999999997	4.33899	0.0360127	0.0206616	0.152355	0.110999
chr16	21408846	21408945	6460389	0	-	0.444444	(0.44,0.476]	chr16	623168	16	INTRON	INTRON	NPIPB3	ENSG00000169246.16	ENST00000504841.6:ENST00000419180.6:ENST00000448012.6:ENST00000542953.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	33	2	2.00609	3.1725399999999997	4.33899	0.0360127	0.0206616	0.152355	0.110999
chr17	82524600	82524700	6692653	0	+	0.45	(0.44,0.476]	chr17	654627	39	INTRON	INTRON	FOXK2	ENSG00000141568.21	ENST00000473637.6:ENST00000335255.10:ENST00000527313.6:ENST00000570585.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	33	2	2.00609	3.1725399999999997	4.33899	0.0360127	0.0206616	0.152355	0.110999
chr9	129064719	129064818	4208804	0	+	0.454545	(0.44,0.476]	chr9	385533	7	INTRON	INTRON	MIGA2	ENSG00000148343.19	ENST00000684074.1:ENST00000439290.5:ENST00000445183.5:ENST00000358369.8:ENST00000474639.5:ENST00000495975.1:ENST00000414342.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	33	2	2.00609	3.1725399999999997	4.33899	0.0360127	0.0206616	0.152355	0.110999
chrX	71289730	71289829	7678061	0	+	0.474747	(0.44,0.476]	chrX	786073	8	INTRON	INTRON	NONO	ENSG00000147140.17	ENST00000677446.1:ENST00000677274.1:ENST00000535149.5:ENST00000420903.6:ENST00000678335.1:ENST00000678830.1:ENST00000677826.1:ENST00000473525.2:ENST00000678437.1:ENST00000676499.1:ENST00000676495.1:ENST00000678323.1:ENST00000677766.1:ENST00000679267.1:ENST00000373856.8:ENST00000679254.1:ENST00000677879.1:ENST00000677245.1:ENST00000373841.5:ENST00000276079.13:ENST00000679029.1:ENST00000677218.1:ENST00000676797.1:ENST00000679062.1:ENST00000678660.1:ENST00000677014.1:ENST00000678231.1:ENST00000474431.5:ENST00000677612.1:ENST00000677977.1:ENST00000471419.7:ENST00000472185.1:ENST00000413858.5:ENST00000486613.6:ENST00000450092.6:ENST00000454976.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	33	2	2.00609	3.1725399999999997	4.33899	0.0360127	0.0206616	0.152355	0.110999
chr7	107547310	107547410	3612860	0	-	0.38	(0.378,0.408]	chr7	336704	196	INTRON	INTRON	COG5	ENSG00000164597.15	ENST00000297135.9:ENST00000347053.8:ENST00000393603.7:ENST00000475638.6:ENST00000605888.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	35	2	2.23831	3.17246	4.10661	0.0399023	0.0179575	0.143072	0.114265
chr11	3396388	3396488	4722995	0	+	0.54	(0.515,0.57]	chr11	436998	1	INTRON	INTRON	TSSC2	ENSG00000223756.8	ENST00000685598.1:ENST00000691197.1:ENST00000533775.6:ENST00000690471.1:ENST00000529482.5:ENST00000693396.1:ENST00000685130.1:ENST00000526284.5:ENST00000526488.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	2	32	2	1.9459	3.17245	4.399	0.0429089	0.00708863	0.148082	0.0754923
chr1	117624834	117624932	199113	0	+	0.316327	(0.28,0.32]	chr1	22011	9	UTR3	UTR3:EXON_MRNA	TENT5C	ENSG00000183508.5	ENST00000369448.4	protein_coding	protein_coding	protein_coding	protein_coding	2	68	2	2.87382	3.17222	3.47062	0.014868	0.00137212	0.0989021	0.0340241
chr18	9123777	9123876	6868810	0	+	0.393939	(0.378,0.408]	chr18	680531	7	INTRON	INTRON	NDUFV2	ENSG00000178127.13	ENST00000318388.11:ENST00000400033.1:ENST00000465096.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	137	2	2.83501	3.17204	3.50907	0.00127828	4.03838e-5	0.0326395	0.00515782
chr1	92511373	92511472	505409	0	-	0.434343	(0.408,0.44]	chr1	59770	28	UTR3	UTR3:EXON_MRNA	EVI5	ENSG00000067208.16	ENST00000370331.5:ENST00000540033.2:ENST00000684568.2	protein_coding	protein_coding	protein_coding	protein_coding	3	74	2	2.64829	3.172005	3.69572	0.00400062	5.37849e-4	0.057767	0.0214775
chr15	50635644	50635743	6172765	0	-	0.40404	(0.378,0.408]	chr15	588360	7	INTRON	INTRON	TRPM7	ENSG00000092439.16	ENST00000646667.1:ENST00000560955.5	protein_coding	protein_coding	protein_coding	protein_coding	2	37	2	1.8252	3.1718699999999997	4.51854	0.0619563	0.00748824	0.174514	0.0772645
chr16	2934880	2934976	6280663	0	+	0.40625	(0.378,0.408]	chr16	600969	1	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	FLYWCH1	ENSG00000059122.17	ENST00000253928.14:ENST00000416288.6:ENST00000573564.5:ENST00000344592.9:ENST00000571580.1:ENST00000575604.1:ENST00000570752.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	37	2	1.8252	3.1718699999999997	4.51854	0.0619563	0.00748824	0.174514	0.0772645
chr5	151078543	151078643	2752544	0	-	0.38	(0.378,0.408]	chr5	259444	1	SS3_PROX	SS3_PROX:INTRON	TNIP1	ENSG00000145901.16	ENST00000521591.6:ENST00000520931.5:ENST00000389378.6:ENST00000610874.4:ENST00000315050.11:ENST00000523338.5:ENST00000610535.5:ENST00000522226.5:ENST00000518977.5:ENST00000522100.5:ENST00000520695.5:ENST00000521001.1:ENST00000522926.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	37	2	1.8252	3.1718699999999997	4.51854	0.0619563	0.00748824	0.174514	0.0772645
chr1	160301552	160301652	571880	0	-	0.48	(0.476,0.515]	chr1	69300	19	INTRON	INTRON	COPA	ENSG00000122218.17	ENST00000241704.8:ENST00000696204.1:ENST00000696203.1:ENST00000696202.1:ENST00000649963.1:ENST00000696208.1:ENST00000696207.1:ENST00000696206.1:ENST00000649676.1:ENST00000368069.7:ENST00000647693.1:ENST00000649787.1:ENST00000650154.1:ENST00000647799.1:ENST00000648805.1:ENST00000647683.1:ENST00000649231.1:ENST00000648501.1:ENST00000696209.1:ENST00000696210.1:ENST00000696211.1:ENST00000647899.1:ENST00000648632.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	54	2	2.9435	3.1717649999999997	3.40003	0.00929849	0.00139193	0.0817766	0.0341261
chr6	12043539	12043639	2814541	0	+	0.53	(0.515,0.57]	chr6	264800	44	INTRON	INTRON	HIVEP1	ENSG00000095951.17	ENST00000491710.5:ENST00000487103.5:ENST00000379388.7:ENST00000627968.2:ENST00000541134.5:ENST00000442081.6:ENST00000478545.1	protein_coding	protein_coding	protein_coding	protein_coding	7	137	2	2.97005	3.17171	3.37337	8.35839e-5	1.59756e-5	0.00815123	0.00301858
chr2	65422875	65422975	1144100	0	-	0.4	(0.378,0.408]	chr2	122242	453	INTRON	INTRON	SPRED2	ENSG00000198369.10	ENST00000356388.9:ENST00000440972.1	protein_coding	protein_coding	protein_coding	protein_coding	3	85	2	3.05393	3.1716499999999996	3.28937	0.00551532	3.2389e-4	0.0672816	0.0165891
chr16	85615491	85615590	6415991	0	+	0.646465	(0.57,1]	chr16	615481	17	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1:ENST00000405402.6:ENST00000411612.5:ENST00000253458.12:ENST00000393243.5	protein_coding	protein_coding	protein_coding	protein_coding	2	31	2	2.78409	3.171645	3.5592	0.0116033	4.21089e-4	0.0889104	0.0183576
chr1	58691211	58691311	467748	0	-	0.48	(0.476,0.515]	chr1	56491	1	SS5_PROX	SS5_PROX:INTRON	MYSM1	ENSG00000162601.11	ENST00000655340.1:ENST00000472487.6:ENST00000665648.1:ENST00000659812.1:ENST00000659108.1:ENST00000660611.1:ENST00000483003.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	54	2	3.15202	3.171605	3.19119	0.00455841	0.00325748	0.0595107	0.0524329
chr19	1925052	1925148	6995735	0	+	0.489583	(0.476,0.515]	chr19	693350	9	UTR3	UTR3:EXON_MRNA	SCAMP4	ENSG00000227500.10	ENST00000316097.13:ENST00000409472.5:ENST00000472442.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	54	2	3.15202	3.171605	3.19119	0.00455841	0.00325748	0.0595107	0.0524329
chr1	15511078	15511177	380621	0	-	0.474747	(0.44,0.476]	chr1	44643	28	INTRON	INTRON	CASP9	ENSG00000132906.18	ENST00000546424.5:ENST00000333868.10:ENST00000348549.9:ENST00000400777.7:ENST00000375890.8:ENST00000474305.2:ENST00000447522.5:ENST00000440484.1:ENST00000546969.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	45	2	1.81283	3.171585	4.53034	0.0343005	0.00672609	0.135641	0.0738715
chr17	77094603	77094700	6678159	0	+	0.453608	(0.44,0.476]	chr17	652310	14	EXON_LNCRNA	EXON_LNCRNA:INTRON	SNHG20:SEC14L1	ENSG00000234912.12:ENSG00000129657.16	ENST00000564414.5:ENST00000568056.5:ENST00000647734.1:ENST00000434411.6:ENST00000649047.1:ENST00000649712.1:ENST00000650557.1:ENST00000647904.1:ENST00000648984.1:ENST00000392476.6:ENST00000589827.5:ENST00000561721.6:ENST00000561633.5:ENST00000564509.5:ENST00000565256.1:ENST00000566583.5:ENST00000648740.1:ENST00000569632.1:ENST00000430767.8	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	3	45	2	1.81283	3.171585	4.53034	0.0343005	0.00672609	0.135641	0.0738715
chr1	109418760	109418860	521235	0	-	0.26	[0,0.28]	chr1	61255	30	INTRON	INTRON	PSMA5	ENSG00000143106.13	ENST00000271308.9:ENST00000490870.5:ENST00000538610.5:ENST00000484563.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	78	2	2.73384	3.17156	3.60928	0.0246308	9.66382e-4	0.12011	0.0285961
chr19	4500690	4500790	7002513	0	+	0.55	(0.515,0.57]	chr19	694671	1	SS3_PROX	SS3_PROX:INTRON	HDGFL2	ENSG00000167674.15	ENST00000616600.5:ENST00000621835.4:ENST00000615225.1:ENST00000587016.5:ENST00000592417.2:ENST00000614903.1:ENST00000619255.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	48	2	2.98677	3.17143	3.35609	0.00632549	0.00174131	0.0722266	0.0375363
chr15	63538555	63538655	6042252	0	+	0.53	(0.515,0.57]	chr15	575394	10	INTRON	INTRON	USP3	ENSG00000140455.17	ENST00000540797.5:ENST00000380324.8:ENST00000561442.5:ENST00000560070.5:ENST00000557884.5:ENST00000558157.5:ENST00000561326.5:ENST00000559873.5:ENST00000559192.5:ENST00000559771.5:ENST00000268049.11:ENST00000558285.5:ENST00000559257.5:ENST00000538686.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	63	2	2.68132	3.1714149999999997	3.66151	0.00324198	4.49566e-4	0.0524329	0.0196044
chr22	20983422	20983522	7480898	0	+	0.39	(0.378,0.408]	chr22	763111	3	SS5_PROX	SS5_PROX:INTRON	LZTR1	ENSG00000099949.21	ENST00000414985.5:ENST00000646124.2:ENST00000493460.2:ENST00000443265.5:ENST00000645935.1:ENST00000644435.1:ENST00000642151.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	139	2	2.50675	3.171395	3.83604	0.00144847	8.26408e-6	0.034341000000000003	0.00207261
chr5	146476907	146477006	2515807	0	+	0.40404	(0.378,0.408]	chr5	240338	50	INTRON	INTRON	TCERG1	ENSG00000113649.13	ENST00000507175.5:ENST00000296702.9:ENST00000679501.2:ENST00000394421.7:ENST00000549332.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	75	2	2.86955	3.171385	3.47322	0.00159247	0.00147803	0.0367961	0.0348908
chr4	771889	771988	2093317	0	-	0.606061	(0.57,1]	chr4	206823	39	INTRON	INTRON	ENSG00000249592	ENSG00000249592.7	ENST00000660016.1:ENST00000665579.1:ENST00000503571.5:ENST00000652800.1:ENST00000507446.1	lncRNA	lncRNA	lncRNA	lncRNA	7	78	2	2.40924	3.1713	3.93336	6.26777e-4	1.31607e-6	0.0230192	6.75311e-4
chr7	11070455	11070555	3283577	0	+	0.36	(0.35,0.378]	chr7	304989	75	INTRON	INTRON	PHF14	ENSG00000106443.17	ENST00000642461.1:ENST00000634607.2:ENST00000403050.7:ENST00000521747.5:ENST00000423760.6:ENST00000481418.5:ENST00000470665.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	29	2	2.39939	3.17115	3.94291	0.0458078	0.0374229	0.155878	0.149888
chr18	9232748	9232848	6869901	0	+	0.28	[0,0.28]	chr18	680611	104	INTRON	INTRON	ANKRD12	ENSG00000101745.17	ENST00000262126.9:ENST00000540578.6:ENST00000400020.7:ENST00000546007.6:ENST00000359158.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	79	2	2.64309	3.171045	3.699	0.0308646	6.64135e-4	0.13151	0.0233423
chr1	113957786	113957875	192091	0	+	0.370787	(0.35,0.378]	chr1	21189	1	SS3_PROX	SS3_PROX:INTRON	HIPK1	ENSG00000163349.22	ENST00000426820.7:ENST00000626993.2:ENST00000369559.8:ENST00000369558.5:ENST00000369561.8:ENST00000369555.6:ENST00000340480.8:ENST00000369553.5	protein_coding	protein_coding	protein_coding	protein_coding	2	35	2	2.04358	3.170985	4.29839	0.0329533	0.0294717	0.145171	0.128055
chr5	32379306	32379402	2598657	0	-	0.322917	(0.32,0.35]	chr5	246880	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	ZFR	ENSG00000056097.16	ENST00000265069.13:ENST00000514356.5:ENST00000510369.5:ENST00000507465.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	84	2	2.82385	3.170965	3.51808	0.00217392	0.00151238	0.043502	0.0352794
chr12	45900469	45900568	5124446	0	+	0.353535	(0.35,0.378]	chr12	483398	64	INTRON	INTRON	ARID2	ENSG00000189079.17	ENST00000334344.11:ENST00000479608.5:ENST00000444670.5:ENST00000457135.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	98	2	2.64221	3.170745	3.69928	0.00186959	3.94786e-4	0.0390476	0.0178567
chr3	37101628	37101727	1655872	0	-	0.424242	(0.408,0.44]	chr3	169934	46	INTRON	INTRON	LRRFIP2	ENSG00000093167.18	ENST00000336686.9:ENST00000354379.8:ENST00000421276.6:ENST00000396428.6:ENST00000440230.5:ENST00000416425.5:ENST00000481682.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	102	2	2.57295	3.17062	3.76829	0.00640423	1.18617e-5	0.0694534	0.0025447
chr3	108050395	108050477	1768874	0	-	0.402439	(0.378,0.408]	chr3	178912	4	SS5_PROX	SS5_PROX:INTRON	CD47	ENSG00000196776.17	ENST00000361309.6:ENST00000355354.13:ENST00000471694.1:ENST00000517766.5:ENST00000398258.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	189	2	3.01342	3.1705550000000002	3.32769	3.05889e-4	3.03789e-6	0.0161362	0.00112165
chr12	46396708	46396807	5124661	0	+	0.323232	(0.32,0.35]	chr12	483424	47	INTRON	INTRON	ENSG00000257261	ENSG00000257261.7	ENST00000687751.1:ENST00000667191.1:ENST00000663959.1:ENST00000666025.1:ENST00000611243.2:ENST00000666942.1:ENST00000551503.5	lncRNA	lncRNA	lncRNA	lncRNA	2	36	2	1.88468	3.170485	4.45629	0.0515071	0.0246089	0.176696	0.12011
chr12	123586054	123586153	5243016	0	+	0.343434	(0.32,0.35]	chr12	498261	6	UTR5	UTR5:EXON_MRNA:INTRON	TMED2	ENSG00000086598.11	ENST00000438031.2:ENST00000543425.1:ENST00000262225.8:ENST00000544188.1:ENST00000509052.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	36	2	1.88468	3.170485	4.45629	0.0515071	0.0246089	0.176696	0.12011
chr16	89477055	89477154	6543467	0	-	0.333333	(0.32,0.35]	chr16	634281	454	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	36	2	1.88468	3.170485	4.45629	0.0515071	0.0246089	0.176696	0.12011
chr19	1641172	1641272	7113000	0	-	0.35	(0.32,0.35]	chr19	714651	84	INTRON	INTRON	TCF3	ENSG00000071564.17	ENST00000344749.9:ENST00000611869.5:ENST00000262965.12:ENST00000588136.7:ENST00000453954.6:ENST00000395423.7:ENST00000587235.6:ENST00000586318.1	protein_coding	protein_coding	protein_coding	protein_coding	2	36	2	1.88468	3.170485	4.45629	0.0515071	0.0246089	0.176696	0.12011
chr2	172564230	172564316	919983	0	+	0.337209	(0.32,0.35]	chr2	101346	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PDK1	ENSG00000152256.14	ENST00000443353.5:ENST00000436490.5:ENST00000392571.6:ENST00000410055.5:ENST00000282077.8:ENST00000431718.5:ENST00000416991.5:ENST00000439519.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	36	2	1.88468	3.170485	4.45629	0.0515071	0.0246089	0.176696	0.12011
chr6	37465878	37465977	2856841	0	+	0.333333	(0.32,0.35]	chr6	270152	25	INTRON	INTRON	CMTR1	ENSG00000137200.13	ENST00000373451.9	protein_coding	protein_coding	protein_coding	protein_coding	2	36	2	1.88468	3.170485	4.45629	0.0515071	0.0246089	0.176696	0.12011
chr7	128587863	128587963	3407927	0	+	0.33	(0.32,0.35]	chr7	318358	74	INTRON	INTRON	ENSG00000280828:ENSG00000242588	ENSG00000280828.1:ENSG00000242588.6	ENST00000479267.2:ENST00000605862.5	lncRNA	lncRNA	lncRNA:unprocessed_pseudogene	lncRNA:unprocessed_pseudogene	2	36	2	1.88468	3.170485	4.45629	0.0515071	0.0246089	0.176696	0.12011
chr3	48022815	48022915	1686839	0	-	0.52	(0.515,0.57]	chr3	172280	65	INTRON	INTRON	MAP4	ENSG00000047849.22	ENST00000395734.7:ENST00000426837.6:ENST00000360240.10:ENST00000423088.5:ENST00000439356.2:ENST00000468075.2	protein_coding	protein_coding	protein_coding	protein_coding	4	77	2	2.27116	3.17046	4.06976	0.00601759	5.5596e-5	0.0700813	0.00651834
chr11	105487216	105487316	5030094	0	-	0.5	(0.476,0.515]	chr11	474023	284	INTRON	INTRON	CARD18	ENSG00000255501.3	ENST00000649856.1:ENST00000528811.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	35	2	1.72558	3.170385	4.61519	0.0767648	0.00528365	0.196164	0.0656295
chr16	18834538	18834622	6457116	0	-	0.5	(0.476,0.515]	chr16	622642	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SMG1	ENSG00000157106.18	ENST00000446231.7:ENST00000565324.5	protein_coding	protein_coding	protein_coding	protein_coding	2	35	2	1.72558	3.170385	4.61519	0.0767648	0.00528365	0.196164	0.0656295
chr3	43697214	43697311	1410236	0	+	0.319588	(0.28,0.32]	chr3	147915	17	INTRON	INTRON	ABHD5	ENSG00000011198.10	ENST00000643520.1:ENST00000456453.5:ENST00000458276.7:ENST00000486764.1:ENST00000649763.1:ENST00000643140.1:ENST00000643500.1:ENST00000644371.2:ENST00000013894.3:ENST00000646378.1:ENST00000643477.1:ENST00000646799.1:ENST00000454293.2:ENST00000642351.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	132	2	2.94027	3.17034	3.40041	0.00273088	1.48354e-4	0.0467642	0.0105826
chr15	57997626	57997725	6186852	0	-	0.292929	(0.28,0.32]	chr15	589758	21	INTRON	INTRON	ALDH1A2	ENSG00000128918.15	ENST00000537372.5:ENST00000249750.9:ENST00000347587.7:ENST00000430119.6:ENST00000558231.5:ENST00000559517.5:ENST00000559266.5:ENST00000561070.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	126	2	2.62951	3.1702899999999996	3.71107	8.39788e-4	7.40084e-4	0.0266487	0.024882
chr6	15339521	15339621	2823882	0	+	0.55	(0.515,0.57]	chr6	265192	246	INTRON	INTRON	JARID2	ENSG00000008083.14	ENST00000341776.7:ENST00000397311.4	protein_coding	protein_coding	protein_coding	protein_coding	4	76	2	2.57713	3.170035	3.76294	0.00176427	2.08636e-4	0.0376652	0.0125926
chr1	6796129	6796228	5747	0	+	0.414141	(0.408,0.44]	chr1	1124	102	INTRON	INTRON	CAMTA1	ENSG00000171735.19	ENST00000303635.12:ENST00000490738.5:ENST00000476163.5:ENST00000473578.5:ENST00000557126.5:ENST00000467404.6:ENST00000461311.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	33	2	2.00768	3.1700299999999997	4.33238	0.035843	0.0218901	0.152216	0.11491
chr7	77819845	77819945	3344160	0	+	0.43	(0.408,0.44]	chr7	311483	205	INTRON	INTRON	PHTF2	ENSG00000006576.17	ENST00000422959.7:ENST00000416283.6:ENST00000307305.12:ENST00000424760.5:ENST00000415251.6:ENST00000275575.11	protein_coding	protein_coding	protein_coding	protein_coding	2	33	2	2.00768	3.1700299999999997	4.33238	0.035843	0.0218901	0.152216	0.11491
chr7	157174418	157174518	3454298	0	+	0.42	(0.408,0.44]	chr7	322919	1	SS3_PROX	SS3_PROX:INTRON	UBE3C	ENSG00000009335.18	ENST00000611269.4:ENST00000348165.10:ENST00000389103.4	protein_coding	protein_coding	protein_coding	protein_coding	2	33	2	2.00768	3.1700299999999997	4.33238	0.035843	0.0218901	0.152216	0.11491
chr12	51162114	51162214	5325765	0	-	0.48	(0.476,0.515]	chr12	507890	366	INTRON	INTRON	TFCP2	ENSG00000135457.11	ENST00000257915.10:ENST00000685804.1:ENST00000549867.5:ENST00000548115.5:ENST00000548108.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	33	2	1.99341	3.169945	4.34648	0.037389	0.0193566	0.155878	0.108861
chr12	116535863	116535963	5232884	0	+	0.48	(0.476,0.515]	chr12	496393	20	EXON_LNCRNA	EXON_LNCRNA:SS3_PROX:INTRON	LINC00173	ENSG00000196668.4	ENST00000470091.1:ENST00000659479.1	lncRNA	lncRNA	lncRNA	lncRNA	2	33	2	1.99341	3.169945	4.34648	0.037389	0.0193566	0.155878	0.108861
chr9	132354416	132354516	4367165	0	-	0.51	(0.476,0.515]	chr9	401515	1	SS5_PROX	SS5_PROX:INTRON	SETX	ENSG00000107290.14	ENST00000224140.6	protein_coding	protein_coding	protein_coding	protein_coding	2	33	2	1.99341	3.169945	4.34648	0.037389	0.0193566	0.155878	0.108861
chrX	136860029	136860129	7897472	0	-	0.5	(0.476,0.515]	chrX	804139	111	INTRON	INTRON	RBMX	ENSG00000147274.14	ENST00000561733.5	protein_coding	processed_transcript	protein_coding	processed_transcript	2	33	2	1.99341	3.169945	4.34648	0.037389	0.0193566	0.155878	0.108861
chr18	694634	694734	6939596	0	-	0.36	(0.35,0.378]	chr18	686430	3	SS3_PROX	SS3_PROX:INTRON	ENOSF1	ENSG00000132199.20	ENST00000647584.2:ENST00000383578.7:ENST00000340116.12:ENST00000581475.5:ENST00000580982.5:ENST00000585128.6:ENST00000584453.5:ENST00000578651.5:ENST00000585004.5:ENST00000579053.5:ENST00000583771.1:ENST00000580605.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	30	2	2.53856	3.169925	3.80129	0.0504034	0.0326077	0.17488	0.133687
chr2	43892445	43892545	1109517	0	-	0.37	(0.35,0.378]	chr2	118935	2	INTRON	INTRON	LRPPRC	ENSG00000138095.20	ENST00000260665.12:ENST00000682612.1:ENST00000684454.1:ENST00000682308.1:ENST00000682154.1:ENST00000683459.1:ENST00000683623.1:ENST00000683002.1:ENST00000682696.1:ENST00000683125.1:ENST00000683994.1:ENST00000684619.1:ENST00000683833.1:ENST00000682546.1:ENST00000683080.1:ENST00000681993.1:ENST00000682585.1:ENST00000683220.1:ENST00000683796.1:ENST00000682607.1:ENST00000683590.1:ENST00000684306.1:ENST00000683213.1:ENST00000683409.1:ENST00000684418.1:ENST00000682779.1:ENST00000684433.1:ENST00000682885.1:ENST00000419884.6:ENST00000684743.1:ENST00000463456.5:ENST00000683346.1:ENST00000683072.1:ENST00000682303.1:ENST00000683329.1:ENST00000683096.1:ENST00000682933.1:ENST00000684383.1:ENST00000682480.1:ENST00000684290.1:ENST00000682434.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	30	2	2.53856	3.169925	3.80129	0.0504034	0.0326077	0.17488	0.133687
chr15	78897164	78897261	6069803	0	+	0.237113	[0,0.28]	chr15	578256	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	MORF4L1	ENSG00000185787.15	ENST00000379535.8:ENST00000331268.9:ENST00000426013.7:ENST00000559345.5:ENST00000561171.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	351	2	2.83362	3.1699	3.50618	7.96126e-5	3.50515e-5	0.00801397	0.00472349
chr9	135935477	135935575	4372297	0	-	0.479592	(0.476,0.515]	chr9	402502	16	INTRON	INTRON	UBAC1	ENSG00000130560.9	ENST00000371756.4:ENST00000489050.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	24	527	2	3.1101	3.169875	3.22965	5.23656e-7	4.17714e-7	4.21981e-4	3.37394e-4
chr19	1919490	1919583	6995675	0	+	0.451613	(0.44,0.476]	chr19	693333	1	INTRON	INTRON	SCAMP4	ENSG00000227500.10	ENST00000414057.6:ENST00000316097.13:ENST00000489554.1:ENST00000409472.5:ENST00000621748.1:ENST00000585335.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	34	2	2.21079	3.1696099999999996	4.12843	0.0337192	0.0194581	0.134145	0.119831
chr1	40198542	40198641	80339	0	+	0.525253	(0.515,0.57]	chr1	10425	24	INTRON	INTRON	RLF	ENSG00000117000.9	ENST00000372771.5	protein_coding	protein_coding	protein_coding	protein_coding	2	47	2	3.1473	3.16954	3.19178	0.00397184	0.00289534	0.0549214	0.0494641
chrX	53397412	53397511	7819925	0	-	0.525253	(0.515,0.57]	chrX	797703	4	INTRON	INTRON	SMC1A	ENSG00000072501.19	ENST00000375340.10:ENST00000322213.9:ENST00000675504.1:ENST00000674590.1	protein_coding	protein_coding	protein_coding	protein_coding	2	47	2	3.1473	3.16954	3.19178	0.00397184	0.00289534	0.0549214	0.0494641
chr6	124980073	124980172	2951649	0	+	0.323232	(0.32,0.35]	chr6	277674	81	INTRON	INTRON	RNF217	ENSG00000146373.17	ENST00000521654.7:ENST00000560949.5:ENST00000519565.5:ENST00000454842.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	85	2	3.16237	3.1694950000000004	3.1766200000000002	0.00550276	4.35341e-4	0.0648867	0.0187673
chr9	125239624	125239715	4352483	0	-	0.571429	(0.57,1]	chr9	399604	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HSPA5	ENSG00000044574.9	ENST00000324460.7:ENST00000680257.1:ENST00000679355.1:ENST00000681045.1:ENST00000681424.1:ENST00000681675.1:ENST00000681544.1:ENST00000680272.1:ENST00000679475.1:ENST00000680494.1:ENST00000681774.1:ENST00000680640.1:ENST00000680032.1:ENST00000681540.1:ENST00000680234.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	74	2	2.18579	3.16949	4.15319	0.00400391	2.10912e-7	0.0551303	2.17494e-4
chr6	30616650	30616737	3077364	0	-	0.45977	(0.44,0.476]	chr6	286297	3	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	PPP1R10	ENSG00000204569.10	ENST00000376511.7:ENST00000484449.1:ENST00000473954.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	23	522	2	3.14232	3.16946	3.1966	9.00319e-7	4.82363e-7	5.37848e-4	3.9996e-4
chr2	87479822	87479922	826169	0	+	0.37	(0.35,0.378]	chr2	92428	2	SS3_PROX	SS3_PROX:INTRON	CYTOR:ENSG00000284879	ENSG00000222041.12:ENSG00000284879.1	ENST00000642796.1:ENST00000643589.1:ENST00000642451.1:ENST00000646386.1:ENST00000644478.1:ENST00000409139.6:ENST00000331944.10:ENST00000644125.1:ENST00000643743.1:ENST00000644577.1:ENST00000643276.1:ENST00000409898.2:ENST00000419680.6:ENST00000644976.1:ENST00000643070.1:ENST00000646855.1:ENST00000414584.1:ENST00000455131.5:ENST00000646636.1:ENST00000642293.1:ENST00000423846.5:ENST00000644040.1:ENST00000645138.1:ENST00000437561.2:ENST00000629257.1:ENST00000414030.6	lncRNA	lncRNA	lncRNA	lncRNA	4	106	2	3.09958	3.16944	3.2393	8.54875e-4	2.86552e-4	0.0267428	0.0150568
chr13	33843192	33843292	5467609	0	+	0.3	(0.28,0.32]	chr13	523970	58	INTRON	INTRON	RFC3	ENSG00000133119.13	ENST00000434425.5:ENST00000616236.1	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	2.32871	3.169365	4.01002	0.0581621	0.0434868	0.167723	0.162255
chr9	126812314	126812414	4199424	0	+	0.32	(0.28,0.32]	chr9	383325	30	INTRON	INTRON	ZBTB43	ENSG00000169155.10	ENST00000449886.5:ENST00000450858.1:ENST00000373464.5	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	2.32871	3.169365	4.01002	0.0581621	0.0434868	0.167723	0.162255
chr2	239974646	239974743	1345205	0	-	0.412371	(0.408,0.44]	chr2	141037	6	INTRON	INTRON	NDUFA10	ENSG00000130414.13	ENST00000419408.5:ENST00000679183.1:ENST00000677057.1:ENST00000676782.1:ENST00000677407.1:ENST00000676929.1:ENST00000678455.1:ENST00000252711.7:ENST00000677692.1:ENST00000476216.6:ENST00000677395.1:ENST00000678188.1:ENST00000677979.1:ENST00000678914.1:ENST00000678562.1:ENST00000678832.1:ENST00000677155.1:ENST00000677764.1:ENST00000677294.1:ENST00000678468.1:ENST00000677324.1:ENST00000678158.1:ENST00000676491.1:ENST00000471378.1:ENST00000677114.1:ENST00000404554.5:ENST00000620965.5:ENST00000485344.6:ENST00000679308.1:ENST00000677567.1:ENST00000679158.1:ENST00000443626.5:ENST00000444548.6:ENST00000448880.6:ENST00000677490.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	41	2	2.36185	3.16932	3.97679	0.0299485	0.0133164	0.142135	0.094512
chr1	165900898	165900997	244492	0	+	0.464646	(0.44,0.476]	chr1	29176	25	INTRON	INTRON	UCK2	ENSG00000143179.16	ENST00000367879.9:ENST00000642653.1:ENST00000462329.5:ENST00000464197.5:ENST00000469256.6:ENST00000470820.1:ENST00000463772.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	54	2	3.02751	3.169305	3.3111	0.00715968	0.0020006	0.0723634	0.0412555
chr2	112545730	112545830	851629	0	+	0.46	(0.44,0.476]	chr2	95429	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	POLR1B	ENSG00000125630.16	ENST00000537335.5:ENST00000438748.5:ENST00000541869.5:ENST00000430769.1:ENST00000333990.10:ENST00000409894.7:ENST00000448770.5:ENST00000430293.1:ENST00000424062.1:ENST00000263331.10:ENST00000417433.6:ENST00000496238.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	54	2	3.02751	3.169305	3.3111	0.00715968	0.0020006	0.0723634	0.0412555
chr3	21542788	21542857	1387335	0	+	0.463768	(0.44,0.476]	chr3	145348	1	EXON_LNCRNA	EXON_LNCRNA	ZNF385D-AS1	ENSG00000225542.2	ENST00000662195.1:ENST00000412369.1	lncRNA	lncRNA	lncRNA	lncRNA	2	54	2	3.02751	3.169305	3.3111	0.00715968	0.0020006	0.0723634	0.0412555
chr7	50608758	50608858	3530809	0	-	0.45	(0.44,0.476]	chr7	329409	18	INTRON	INTRON	GRB10	ENSG00000106070.20	ENST00000335866.7:ENST00000398812.6:ENST00000398810.6:ENST00000401949.6:ENST00000402578.5:ENST00000644769.1:ENST00000403097.6:ENST00000644879.1:ENST00000406641.5:ENST00000402497.6:ENST00000357271.9:ENST00000643299.1:ENST00000407526.6:ENST00000645075.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	54	2	3.02751	3.169305	3.3111	0.00715968	0.0020006	0.0723634	0.0412555
chr17	27309560	27309630	6580696	0	+	0.314286	(0.28,0.32]	chr17	639634	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	WSB1	ENSG00000109046.15	ENST00000467843.6:ENST00000262394.7:ENST00000348811.6:ENST00000583096.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	269	2	2.96322	3.1693	3.37538	8.95268e-5	1.95725e-5	0.00844245	0.00340584
chr1	29016067	29016167	59978	0	+	0.37	(0.35,0.378]	chr1	7660	3	SS5_PROX	SS5_PROX:INTRON	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000647918.1:ENST00000646800.1:ENST00000644342.1:ENST00000646189.1:ENST00000482464.6:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000646260.1:ENST00000373798.5:ENST00000644600.1:ENST00000649674.1:ENST00000643173.1:ENST00000343067.9:ENST00000644780.1:ENST00000650265.1:ENST00000648181.1:ENST00000643604.1:ENST00000648891.1:ENST00000373797.2:ENST00000349460.9:ENST00000645184.1:ENST00000645111.1:ENST00000643302.1:ENST00000645999.1:ENST00000642643.1:ENST00000636666.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	14	317	2	3.03371	3.16927	3.30483	2.64845e-5	1.94884e-6	0.00426688	8.48403e-4
chr18	12952205	12952305	6876199	0	+	0.41	(0.408,0.44]	chr18	681276	3	SS5_PROX	SS5_PROX:INTRON	SEH1L	ENSG00000085415.16	ENST00000592170.5:ENST00000262124.15:ENST00000399892.7:ENST00000585730.5:ENST00000589446.5:ENST00000587761.1:ENST00000588251.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	80	2	2.27464	3.1692150000000003	4.06379	0.0158016	9.31794e-5	0.109464	0.00857086
chrX	45067584	45067683	7650567	0	+	0.292929	(0.28,0.32]	chrX	782809	34	INTRON	INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000675440.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000621147.5:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1:ENST00000675525.1:ENST00000414389.5:ENST00000675546.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	95	2	2.18092	3.16913	4.15734	0.0271832	5.50456e-5	0.123904	0.00608953
chr17	47142025	47142125	6788901	0	-	0.29	(0.28,0.32]	chr17	669561	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CDC27	ENSG00000004897.12	ENST00000066544.8:ENST00000531206.5:ENST00000533415.5:ENST00000527547.5:ENST00000526866.5:ENST00000573502.1:ENST00000525495.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	43	2	1.81582	3.1690750000000003	4.52233	0.068122	0.0129279	0.184298	0.0990564
chr5	171388704	171388797	2546572	0	+	0.483871	(0.476,0.515]	chr5	243077	2	UTR5	UTR5:EXON_MRNA:INTRON	NPM1	ENSG00000181163.14	ENST00000517671.5:ENST00000676613.1:ENST00000678186.1:ENST00000678267.1:ENST00000677297.1:ENST00000521672.6:ENST00000679190.1:ENST00000677467.1:ENST00000678280.1:ENST00000676625.1:ENST00000679006.1:ENST00000351986.10:ENST00000676504.1:ENST00000676589.1:ENST00000677357.1:ENST00000679233.1:ENST00000296930.10:ENST00000393820.2:ENST00000521260.2:ENST00000518587.2:ENST00000678774.1:ENST00000521710.2:ENST00000523339.1:ENST00000677600.1:ENST00000677741.1:ENST00000523622.1:ENST00000677325.1:ENST00000677672.1:ENST00000677907.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	17	386	2	3.16371	3.1690300000000002	3.17435	4.15855e-6	1.01706e-6	0.0013576	6.25342e-4
chr12	132667855	132667952	5448968	0	-	0.484536	(0.476,0.515]	chr12	521794	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	POLE	ENSG00000177084.18	ENST00000320574.10:ENST00000672742.1:ENST00000537064.5:ENST00000535270.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	35	2	2.32001	3.1688899999999998	4.01777	0.0411361	0.0136217	0.1451	0.101682
chr1	10137605	10137705	20194	0	+	0.44	(0.408,0.44]	chr1	1936	4	SS5_PROX	SS5_PROX:INTRON	UBE4B	ENSG00000130939.20	ENST00000672724.1:ENST00000253251.12:ENST00000343090.11:ENST00000470736.1:ENST00000466379.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	27	2	2.36073	3.16876	3.97679	0.0481658	0.0299485	0.153019	0.142135
chr17	51058674	51058773	6796394	0	-	0.424242	(0.408,0.44]	chr17	671018	18	INTRON	INTRON	SPAG9	ENSG00000008294.22	ENST00000262013.12:ENST00000505279.5:ENST00000357122.8:ENST00000514613.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	27	2	2.36073	3.16876	3.97679	0.0481658	0.0299485	0.153019	0.142135
chr21	32676855	32676954	7439546	0	-	0.414141	(0.408,0.44]	chr21	759113	1	INTRON	INTRON	SYNJ1	ENSG00000159082.18	ENST00000382499.7:ENST00000433931.7:ENST00000382491.7:ENST00000357345.7:ENST00000674351.1:ENST00000674308.1:ENST00000630077.3:ENST00000674204.1:ENST00000429236.5	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	2.36073	3.16876	3.97679	0.0481658	0.0299485	0.153019	0.142135
chr2	9613259	9613358	1064804	0	-	0.272727	[0,0.28]	chr2	113598	214	INTRON	INTRON	YWHAQ	ENSG00000134308.14	ENST00000238081.8:ENST00000381844.8:ENST00000474715.1:ENST00000446619.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	42	2	1.95356	3.1687149999999997	4.38387	0.0501911	0.0463152	0.166231	0.156383
chr4	75720281	75720376	2162596	0	-	0.578947	(0.57,1]	chr4	213077	8	INTRON	INTRON	G3BP2	ENSG00000138757.15	ENST00000676666.1:ENST00000678062.1:ENST00000678100.1:ENST00000678122.1:ENST00000677265.1:ENST00000678971.1:ENST00000679281.1:ENST00000677333.1:ENST00000676470.1:ENST00000677620.1:ENST00000677606.1:ENST00000678798.1:ENST00000677583.1:ENST00000677952.1:ENST00000677970.1:ENST00000499709.3:ENST00000511868.6:ENST00000508510.6:ENST00000678389.1:ENST00000676485.1:ENST00000678843.1:ENST00000676641.1:ENST00000678732.1:ENST00000676689.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	22	2	1.77365	3.16865	4.56365	0.0670385	0.00129848	0.183051	0.0333764
chr21	34123657	34123756	7401597	0	+	0.494949	(0.476,0.515]	chr21	753976	16	EXON_MRNA	EXON_MRNA:INTRON	MRPS6	ENSG00000243927.6	ENST00000488492.5:ENST00000477091.5:ENST00000399312.3:ENST00000483977.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	56	2	1.36472	3.168625	4.97253	0.0467985	0.00311573	0.167716	0.0498063
chr2	113902595	113902695	854369	0	+	0.49	(0.476,0.515]	chr2	95895	115	INTRON	INTRON	ACTR3	ENSG00000115091.12	ENST00000443297.5:ENST00000263238.7:ENST00000415792.5:ENST00000446821.5:ENST00000535589.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	58	2	1.55865	3.168605	4.77856	0.034348	0.00305743	0.135807	0.0509893
chrX	44915085	44915185	7649021	0	+	0.37	(0.35,0.378]	chrX	782726	407	INTRON	INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000675440.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000621147.5:ENST00000475233.1:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	80	2	2.36677	3.168585	3.9704	0.0139343	1.01653e-4	0.0957526	0.00850967
chr8	38139071	38139162	3735024	0	+	0.406593	(0.378,0.408]	chr8	347032	1	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	ASH2L	ENSG00000129691.16	ENST00000545394.2:ENST00000343823.11:ENST00000517496.5:ENST00000428278.6:ENST00000521652.5:ENST00000521808.5:ENST00000520079.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	143	2	2.01164	3.168525	4.32541	0.00201086	2.67062e-5	0.0414617	0.00429057
chr1	1861273	1861373	362543	0	-	0.42	(0.408,0.44]	chr1	42311	212	INTRON	INTRON	GNB1	ENSG00000078369.18	ENST00000610897.4:ENST00000615252.4:ENST00000378609.9:ENST00000439272.6:ENST00000434686.6:ENST00000472614.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	87	2	2.67392	3.16851	3.6631	0.00106946	6.21419e-4	0.0300133	0.0229151
chr6	159690027	159690126	3253839	0	-	0.515152	(0.476,0.515]	chr6	302454	14	INTRON	INTRON	SOD2	ENSG00000112096.19	ENST00000538183.7:ENST00000546260.5:ENST00000367055.8:ENST00000367054.6:ENST00000546087.5:ENST00000444946.6:ENST00000337404.8:ENST00000541573.5:ENST00000540491.1:ENST00000545162.5:ENST00000535561.5:ENST00000537657.5:ENST00000401980.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	40	2	2.365	3.168505	3.97201	0.030904	0.0128901	0.143385	0.0926667
chr11	46838731	46838831	4948691	0	-	0.41	(0.408,0.44]	chr11	463857	120	INTRON	INTRON	CKAP5	ENSG00000175216.15	ENST00000529230.6:ENST00000312055.9:ENST00000525248.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	89	2	2.96532	3.16847	3.37162	0.00208674	2.36857e-4	0.0411801	0.0136195
chr14	96507790	96507890	5810221	0	+	0.44	(0.408,0.44]	chr14	550883	27	INTRON	INTRON	PAPOLA	ENSG00000090060.19	ENST00000554887.5:ENST00000618976.2:ENST00000216277.13:ENST00000553357.5:ENST00000553689.5:ENST00000557320.5:ENST00000554130.5:ENST00000557471.5:ENST00000556619.5:ENST00000392990.6:ENST00000555626.5:ENST00000556248.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	89	2	2.96532	3.16847	3.37162	0.00208674	2.36857e-4	0.0411801	0.0136195
chr21	46225975	46226073	7470852	0	-	0.612245	(0.57,1]	chr21	761544	29	INTRON	INTRON	LSS	ENSG00000160285.15	ENST00000356396.8:ENST00000397728.8:ENST00000457828.6:ENST00000522411.5:ENST00000464357.1:ENST00000450351.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	95	2	3.11334	3.16845	3.22356	2.85055e-5	4.93927e-6	0.00423282	0.00163836
chr19	40449028	40449125	7184411	0	-	0.525773	(0.515,0.57]	chr19	726739	6	INTRON	INTRON	BLVRB	ENSG00000090013.11	ENST00000643519.1:ENST00000263368.9:ENST00000595483.5:ENST00000643596.1:ENST00000601346.5:ENST00000597870.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	38	2	1.56681	3.1683250000000003	4.76984	0.064862	0.00198034	0.179394	0.0411469
chr9	124935687	124935787	4349875	0	-	0.47	(0.44,0.476]	chr9	399402	39	INTRON	INTRON	GOLGA1	ENSG00000136935.14	ENST00000373555.9:ENST00000421514.1	protein_coding	protein_coding	protein_coding	protein_coding	2	54	2	3.07862	3.1683149999999998	3.25801	0.0060153	0.00248185	0.0674604	0.0460771
chr20	2467315	2467412	7305781	0	-	0.515464	(0.515,0.57]	chr20	743800	1	EXON_MRNA	EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SNRPB	ENSG00000125835.20	ENST00000438552.6:ENST00000381342.7:ENST00000688775.1:ENST00000689440.1:ENST00000474384.2:ENST00000693393.1:ENST00000688423.1:ENST00000690623.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	36	2	2.43783	3.168195	3.89856	0.0280943	0.00916404	0.137011	0.0812949
chr20	29081528	29081623	7252509	0	+	0.326316	(0.32,0.35]	chr20	736507	7	INTRON	INTRON	FRG1DP	ENSG00000282870.1	ENST00000635586.1	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	3	84	2	2.78706	3.16816	3.54926	0.00253645	0.00133843	0.0465056	0.0335491
chr18	36021789	36021889	6963078	0	-	0.43	(0.408,0.44]	chr18	689044	281	INTRON	INTRON	RPRD1A	ENSG00000141425.18	ENST00000399022.9:ENST00000590898.5:ENST00000357384.8:ENST00000588737.5	protein_coding	protein_coding	protein_coding	protein_coding	2	37	2	2.00228	3.1681399999999997	4.334	0.0389732	0.011982	0.143072	0.0962115
chr7	140808338	140808416	3662562	0	-	0.307692	(0.28,0.32]	chr7	340078	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	BRAF	ENSG00000157764.14	ENST00000496384.7:ENST00000644969.2:ENST00000644120.1:ENST00000646891.1:ENST00000644905.1:ENST00000642228.1:ENST00000288602.11:ENST00000646730.1:ENST00000497784.2:ENST00000642272.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	123	2	2.9689	3.168085	3.36727	0.00194987	1.9618e-4	0.0400465	0.0122528
chr20	3909005	3909105	7227097	0	+	0.31	(0.28,0.32]	chr20	734494	1	SS5_PROX	SS5_PROX:INTRON	PANK2	ENSG00000125779.24	ENST00000497424.5:ENST00000316562.9:ENST00000495692.5:ENST00000610179.7:ENST00000643504.2:ENST00000336066.8:ENST00000646394.1:ENST00000621507.1:ENST00000471830.1:ENST00000464452.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	68	2	2.82769	3.168025	3.50836	0.0169391	0.00117393	0.103888	0.0316446
chr3	187065016	187065116	1587541	0	+	0.58	(0.57,1]	chr3	164404	4	SS5_PROX	SS5_PROX:INTRON	ST6GAL1	ENSG00000073849.16	ENST00000169298.8:ENST00000457772.6:ENST00000455441.5:ENST00000427315.5:ENST00000677292.1:ENST00000676633.1:ENST00000448044.5:ENST00000416235.6:ENST00000448449.1:ENST00000442023.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	54	2	2.81057	3.1680099999999998	3.52545	0.00169295	2.80799e-5	0.0381936	0.00435887
chr10	91863989	91864088	4488710	0	+	0.282828	(0.28,0.32]	chr10	413283	11	UTR3	UTR3:EXON_MRNA	TNKS2	ENSG00000107854.6	ENST00000371627.5	protein_coding	protein_coding	protein_coding	protein_coding	2	68	2	3.16101	3.16777	3.17453	0.0061861	0.00429297	0.0677395	0.0599065
chr1	246029758	246029858	675928	0	-	0.34	(0.32,0.35]	chr1	79713	413	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000391836.3:ENST00000464398.1:ENST00000453676.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	63	2	3.13277	3.167465	3.20216	0.00480708	0.00458313	0.0622676	0.0602209
chr3	9998622	9998722	1362088	0	+	0.34	(0.32,0.35]	chr3	143402	44	INTRON	INTRON	EMC3-AS1	ENSG00000180385.9	ENST00000692142.1:ENST00000366264.6:ENST00000693066.1:ENST00000326237.3:ENST00000440568.1:ENST00000424904.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	2	63	2	3.13277	3.167465	3.20216	0.00480708	0.00458313	0.0622676	0.0602209
chrX	123984582	123984682	7716981	0	+	0.23	[0,0.28]	chrX	789462	208	INTRON	INTRON	STAG2	ENSG00000101972.20	ENST00000394477.5:ENST00000218089.13:ENST00000455404.5:ENST00000483575.5:ENST00000687810.1:ENST00000687071.1:ENST00000469481.1:ENST00000458700.5:ENST00000371160.5:ENST00000435103.5:ENST00000687852.1:ENST00000371145.8:ENST00000692982.1:ENST00000371157.7:ENST00000691035.1:ENST00000686802.1:ENST00000691383.1:ENST00000686127.1:ENST00000371144.7:ENST00000458176.5:ENST00000466748.5:ENST00000471107.1:ENST00000428941.5:ENST00000435215.5:ENST00000394478.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	51	2	1.71402	3.1674300000000004	4.62084	0.047753	0.0313633	0.170327	0.13151
chr22	49809044	49809144	7603037	0	-	0.47	(0.44,0.476]	chr22	778655	43	INTRON	INTRON	BRD1	ENSG00000100425.19	ENST00000404760.6:ENST00000404034.5:ENST00000216267.12:ENST00000438393.5:ENST00000457780.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	55	2	2.74063	3.1673999999999998	3.59417	0.0176095	5.78231e-4	0.105143	0.0218253
chr9	123252350	123252450	4340319	0	-	0.36	(0.35,0.378]	chr9	398963	150	INTRON	INTRON	STRBP	ENSG00000165209.19	ENST00000348403.10:ENST00000360998.3:ENST00000407982.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	54	2	1.47599	3.167345	4.8587	0.0425671	0.00695662	0.162011	0.0718189
chr1	10509060	10509160	23318	0	+	0.49	(0.476,0.515]	chr1	2503	134	INTRON	INTRON	PEX14	ENSG00000142655.13	ENST00000472851.1:ENST00000356607.9:ENST00000491661.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	26	2	2.23335	3.1672400000000005	4.10113	0.0634557	0.0226984	0.177047	0.124921
chr1	155840821	155840921	564286	0	-	0.48	(0.476,0.515]	chr1	67384	75	INTRON	INTRON	GON4L	ENSG00000116580.20	ENST00000368331.6:ENST00000615926.4:ENST00000437809.5:ENST00000271883.9:ENST00000361040.9:ENST00000622608.2:ENST00000471341.5:ENST00000468867.1:ENST00000488251.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	26	2	2.23335	3.1672400000000005	4.10113	0.0634557	0.0226984	0.177047	0.124921
chr10	58339113	58339212	4435292	0	+	0.50505	(0.476,0.515]	chr10	409089	35	INTRON	INTRON	UBE2D1	ENSG00000072401.15	ENST00000615793.1:ENST00000373910.9	protein_coding	protein_coding	protein_coding	protein_coding	1	26	2	2.23335	3.1672400000000005	4.10113	0.0634557	0.0226984	0.177047	0.124921
chr16	14477191	14477290	6448284	0	-	0.494949	(0.476,0.515]	chr16	621185	64	INTRON	INTRON	PARN	ENSG00000140694.17	ENST00000651865.1:ENST00000437198.7:ENST00000651348.1:ENST00000650990.1:ENST00000651760.1:ENST00000652541.1:ENST00000652727.1:ENST00000652066.1:ENST00000651300.1:ENST00000420015.6:ENST00000652051.1:ENST00000341484.11:ENST00000539279.5:ENST00000564882.5:ENST00000651049.1:ENST00000650960.1:ENST00000651634.1:ENST00000564113.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	26	2	2.23335	3.1672400000000005	4.10113	0.0634557	0.0226984	0.177047	0.124921
chr19	17133621	17133721	7028528	0	+	0.5	(0.476,0.515]	chr19	699592	300	INTRON	INTRON	MYO9B	ENSG00000099331.14	ENST00000682292.1:ENST00000595618.5:ENST00000594824.5:ENST00000397274.6:ENST00000595641.5	protein_coding	protein_coding	protein_coding	protein_coding	1	26	2	2.23335	3.1672400000000005	4.10113	0.0634557	0.0226984	0.177047	0.124921
chr19	52586000	52586098	7095862	0	+	0.489796	(0.476,0.515]	chr19	711423	27	UTR3	UTR3:EXON_MRNA	ZNF701	ENSG00000167562.14	ENST00000391785.8:ENST00000540331.1	protein_coding	protein_coding	protein_coding	protein_coding	1	26	2	2.23335	3.1672400000000005	4.10113	0.0634557	0.0226984	0.177047	0.124921
chr20	35373483	35373583	7334812	0	-	0.49	(0.476,0.515]	chr20	747153	65	INTRON	INTRON	UQCC1	ENSG00000101019.22	ENST00000374380.6:ENST00000374394.7:ENST00000374384.6:ENST00000359226.6:ENST00000349714.9:ENST00000457259.5:ENST00000374385.10:ENST00000453855.5:ENST00000397556.7:ENST00000424405.5:ENST00000443429.5:ENST00000438533.5:ENST00000397554.5:ENST00000491125.5:ENST00000491040.5:ENST00000397553.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	26	2	2.23335	3.1672400000000005	4.10113	0.0634557	0.0226984	0.177047	0.124921
chr20	62925136	62925235	7362441	0	-	0.484848	(0.476,0.515]	chr20	751210	104	INTRON	INTRON	DIDO1	ENSG00000101191.17	ENST00000266070.8:ENST00000395343.6:ENST00000395340.5:ENST00000370371.8:ENST00000370368.5:ENST00000354665.8	protein_coding	protein_coding	protein_coding	protein_coding	1	26	2	2.23335	3.1672400000000005	4.10113	0.0634557	0.0226984	0.177047	0.124921
chr3	194483298	194483398	1891164	0	-	0.51	(0.476,0.515]	chr3	189246	152	INTRON	INTRON	ATP13A3	ENSG00000133657.17	ENST00000687055.1:ENST00000645538.1:ENST00000645319.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	26	2	2.23335	3.1672400000000005	4.10113	0.0634557	0.0226984	0.177047	0.124921
chr3	194484894	194484993	1891180	0	-	0.50505	(0.476,0.515]	chr3	189246	168	INTRON	INTRON	ATP13A3	ENSG00000133657.17	ENST00000687055.1:ENST00000645538.1:ENST00000645319.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	26	2	2.23335	3.1672400000000005	4.10113	0.0634557	0.0226984	0.177047	0.124921
chr7	2290270	2290369	3467443	0	-	0.50505	(0.476,0.515]	chr7	324232	116	INTRON	INTRON	SNX8	ENSG00000106266.11	ENST00000222990.8:ENST00000435060.5:ENST00000457286.5:ENST00000435336.5:ENST00000494722.1:ENST00000447136.1:ENST00000419693.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	26	2	2.23335	3.1672400000000005	4.10113	0.0634557	0.0226984	0.177047	0.124921
chr9	130853264	130853363	4215258	0	+	0.515152	(0.476,0.515]	chr9	386432	174	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000393293.4:ENST00000318560.6	protein_coding	protein_coding	protein_coding	protein_coding	1	26	2	2.23335	3.1672400000000005	4.10113	0.0634557	0.0226984	0.177047	0.124921
chr1	197536871	197536971	614534	0	-	0.55	(0.515,0.57]	chr1	72778	236	INTRON	INTRON	DENND1B	ENSG00000213047.13	ENST00000620048.6:ENST00000294737.11	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	24	2	2.43589	3.167225	3.89856	0.0370871	0.0280943	0.139194	0.137011
chr15	75578313	75578413	6225297	0	-	0.54	(0.515,0.57]	chr15	594642	2	SS5_PROX	SS5_PROX:INTRON	PTPN9	ENSG00000169410.11	ENST00000618819.5	protein_coding	protein_coding	protein_coding	protein_coding	1	24	2	2.43589	3.167225	3.89856	0.0370871	0.0280943	0.139194	0.137011
chr17	77418305	77418404	6680829	0	+	0.525253	(0.515,0.57]	chr17	652538	128	INTRON	INTRON	SEPTIN9	ENSG00000184640.20	ENST00000591198.5:ENST00000427177.6:ENST00000431235.6:ENST00000449803.6:ENST00000329047.13:ENST00000588575.1:ENST00000590294.6:ENST00000588690.6:ENST00000423034.6:ENST00000590059.5:ENST00000427674.6:ENST00000592420.1:ENST00000585930.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	24	2	2.43589	3.167225	3.89856	0.0370871	0.0280943	0.139194	0.137011
chr2	177465379	177465476	926824	0	+	0.56701	(0.515,0.57]	chr2	101841	1	INTRON	INTRON	AGPS	ENSG00000018510.18	ENST00000679459.1:ENST00000637633.2:ENST00000680770.1:ENST00000680705.1:ENST00000681752.1:ENST00000681565.1:ENST00000680893.1:ENST00000681032.1:ENST00000679421.1:ENST00000680910.1:ENST00000409888.1:ENST00000642466.2:ENST00000264167.11:ENST00000680155.1:ENST00000679478.1:ENST00000681449.1:ENST00000681891.1:ENST00000681028.1:ENST00000680028.1:ENST00000679994.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	24	2	2.43589	3.167225	3.89856	0.0370871	0.0280943	0.139194	0.137011
chr2	235712209	235712308	1043522	0	+	0.565657	(0.515,0.57]	chr2	111235	26	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1:ENST00000402604.6:ENST00000409538.5:ENST00000614409.4:ENST00000619456.4:ENST00000428334.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	24	2	2.43589	3.167225	3.89856	0.0370871	0.0280943	0.139194	0.137011
chr21	46431130	46431230	7422337	0	+	0.55	(0.515,0.57]	chr21	756916	4	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PCNT	ENSG00000160299.18	ENST00000695558.1:ENST00000359568.10:ENST00000480896.5:ENST00000695527.1:ENST00000695528.1:ENST00000695529.1:ENST00000695530.1:ENST00000418394.2:ENST00000695532.1:ENST00000695531.1:ENST00000695533.1:ENST00000695534.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	24	2	2.43589	3.167225	3.89856	0.0370871	0.0280943	0.139194	0.137011
chr5	12584725	12584825	2318681	0	+	0.52	(0.515,0.57]	chr5	224776	93	INTRON	INTRON	LINC01194	ENSG00000248131.6	ENST00000513051.6:ENST00000664069.1:ENST00000505196.1:ENST00000505877.5	lncRNA	lncRNA	lncRNA	lncRNA	1	24	2	2.43589	3.167225	3.89856	0.0370871	0.0280943	0.139194	0.137011
chr6	36979647	36979744	3089750	0	-	0.556701	(0.515,0.57]	chr6	289060	8	EXON_MRNA	EXON_MRNA:INTRON	MTCH1	ENSG00000137409.21	ENST00000695055.1:ENST00000695048.1:ENST00000695049.1:ENST00000695050.1:ENST00000695051.1:ENST00000695052.1:ENST00000695053.1:ENST00000695054.1:ENST00000695046.1:ENST00000695047.1:ENST00000695045.1:ENST00000695044.1:ENST00000373616.9:ENST00000373627.10:ENST00000695059.1:ENST00000695060.1:ENST00000695058.1:ENST00000695066.1:ENST00000695067.1:ENST00000695068.1:ENST00000695069.1:ENST00000695063.1:ENST00000695064.1:ENST00000695065.1:ENST00000695062.1:ENST00000695072.1:ENST00000695070.1:ENST00000695071.1:ENST00000695073.1:ENST00000695074.1:ENST00000695075.1:ENST00000695076.1:ENST00000460219.3:ENST00000695077.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	24	2	2.43589	3.167225	3.89856	0.0370871	0.0280943	0.139194	0.137011
chrX	154767577	154767672	7739334	0	+	0.378947	(0.378,0.408]	chrX	792405	2	SS5_PROX	SS5_PROX:INTRON	DKC1	ENSG00000130826.19	ENST00000620277.4:ENST00000413910.6:ENST00000426673.6:ENST00000696575.1:ENST00000369550.10:ENST00000696579.1:ENST00000696578.1:ENST00000696577.1:ENST00000696576.1:ENST00000696580.1:ENST00000696581.1:ENST00000696582.1:ENST00000696583.1:ENST00000696627.1:ENST00000696628.1:ENST00000696584.1:ENST00000696585.1:ENST00000696586.1:ENST00000696587.1:ENST00000696588.1:ENST00000437719.5:ENST00000412124.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	138	2	2.97759	3.1671750000000003	3.35676	2.33175e-4	7.69155e-5	0.013966	0.00735438
chr17	2675377	2675471	6548277	0	+	0.393617	(0.378,0.408]	chr17	635287	4	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	PAFAH1B1	ENSG00000007168.14	ENST00000397195.10:ENST00000675621.1:ENST00000676353.1:ENST00000674717.1:ENST00000675202.1:ENST00000675764.1:ENST00000674608.1:ENST00000676077.1:ENST00000676098.1:ENST00000572915.6:ENST00000675331.1:ENST00000676188.1:ENST00000574816.5:ENST00000675390.1:ENST00000397193.7:ENST00000574468.1:ENST00000571495.2:ENST00000675574.1:ENST00000675385.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	56	2	2.95459	3.167145	3.3797	0.00957623	0.00154501	0.0820838	0.0362716
chr7	849191	849267	3268810	0	+	0.552632	(0.515,0.57]	chr7	303588	2	SS3_PROX	SS3_PROX:INTRON	SUN1	ENSG00000164828.18	ENST00000452783.6:ENST00000389574.7:ENST00000401592.6:ENST00000413171.6:ENST00000405266.5:ENST00000340926.7:ENST00000425407.6:ENST00000450881.5:ENST00000419312.5:ENST00000429178.5:ENST00000433212.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	75	2	2.79572	3.1670800000000003	3.53844	7.92613e-4	5.08572e-4	0.0259663	0.0202333
chr2	118100461	118100560	855305	0	+	0.50505	(0.476,0.515]	chr2	96039	33	INTRON	INTRON	INSIG2	ENSG00000125629.16	ENST00000411929.5:ENST00000245787.9:ENST00000485520.5:ENST00000471186.5:ENST00000467223.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	54	2	2.8863	3.16707	3.44784	0.0111679	0.00113238	0.0877435	0.0308465
chr1	236560433	236560530	665291	0	-	0.57732000000000006	(0.57,1]	chr1	78806	2	INTRON	INTRON	HEATR1	ENSG00000119285.11	ENST00000366582.8:ENST00000366581.6	protein_coding	protein_coding	protein_coding	protein_coding	3	41	2	2.33295	3.167045	4.00114	0.0122896	3.23665e-5	0.091087	0.00453487
chr4	165339278	165339366	2079752	0	+	0.5	(0.476,0.515]	chr4	205581	1	INTRON	INTRON	MSMO1	ENSG00000052802.13	ENST00000507013.5:ENST00000261507.11:ENST00000393766.6:ENST00000504317.1	protein_coding	protein_coding	protein_coding	protein_coding	2	34	2	2.19809	3.166975	4.13586	0.031846	0.020317	0.13151	0.121522
chr5	65935798	65935898	2370936	0	+	0.48	(0.476,0.515]	chr5	228472	86	INTRON	INTRON	ERBIN	ENSG00000112851.15	ENST00000380943.6:ENST00000507490.1:ENST00000416865.6:ENST00000380935.5:ENST00000284037.10:ENST00000380938.6:ENST00000511297.5:ENST00000506030.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	34	2	2.19809	3.166975	4.13586	0.031846	0.020317	0.13151	0.121522
chr1	9543142	9543241	17169	0	+	0.454545	(0.44,0.476]	chr1	1570	30	INTRON	INTRON	SLC25A33	ENSG00000171612.7	ENST00000302692.7	protein_coding	protein_coding	protein_coding	protein_coding	5	103	2	2.50297	3.166835	3.8307	0.00135188	1.81621e-4	0.0336321	0.0117212
chr1	227587201	227587301	329293	0	+	0.35	(0.32,0.35]	chr1	37980	42	INTRON	INTRON	ZNF678	ENSG00000181450.18	ENST00000608949.5:ENST00000465266.1:ENST00000343776.10:ENST00000440339.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	40	2	1.77704	3.1668250000000002	4.55661	0.0719969	0.00927858	0.187322	0.0855292
chr11	120414708	120414807	4876987	0	+	0.323232	(0.32,0.35]	chr11	455815	30	INTRON	INTRON	ARHGEF12	ENSG00000196914.9	ENST00000397843.7:ENST00000356641.7:ENST00000532993.5:ENST00000529970.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	40	2	1.77704	3.1668250000000002	4.55661	0.0719969	0.00927858	0.187322	0.0855292
chr21	32749947	32750041	7440249	0	-	0.340426	(0.32,0.35]	chr21	759248	9	INTRON	INTRON	PAXBP1	ENSG00000159086.15	ENST00000331923.9:ENST00000466846.5:ENST00000443785.5:ENST00000497873.1:ENST00000290178.4:ENST00000421049.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	40	2	1.77704	3.1668250000000002	4.55661	0.0719969	0.00927858	0.187322	0.0855292
chrX	74271162	74271261	7841390	0	-	0.434343	(0.408,0.44]	chrX	799728	88	INTRON	INTRON	FTX	ENSG00000230590.12	ENST00000603672.5:ENST00000430772.6:ENST00000602776.6:ENST00000638681.1:ENST00000652319.1:ENST00000661133.1:ENST00000652071.1:ENST00000602812.6:ENST00000651703.1:ENST00000653018.1:ENST00000658448.1:ENST00000662240.1:ENST00000652527.1:ENST00000651451.1:ENST00000657611.1:ENST00000660481.1:ENST00000659574.1:ENST00000661084.1:ENST00000662494.1:ENST00000670936.1:ENST00000602420.6:ENST00000658203.1:ENST00000638985.1:ENST00000691187.1:ENST00000603037.2:ENST00000687056.1:ENST00000654870.2:ENST00000652540.1:ENST00000652331.2:ENST00000652013.1:ENST00000657070.1:ENST00000665069.1:ENST00000651936.1:ENST00000652496.1:ENST00000653874.2:ENST00000661335.1:ENST00000664123.1:ENST00000658439.1:ENST00000666535.1:ENST00000652970.1:ENST00000423992.3:ENST00000665313.2:ENST00000651140.1:ENST00000660100.1:ENST00000693483.1:ENST00000656041.1:ENST00000657327.1:ENST00000664343.1:ENST00000656977.1:ENST00000671343.1:ENST00000659407.1:ENST00000671067.1:ENST00000660829.1:ENST00000671385.1	lncRNA	lncRNA	lncRNA	lncRNA	15	328	2	2.65398	3.166585	3.67919	6.55257e-5	7.89753e-8	0.00715707	1.21573e-4
chr13	19716977	19717077	5552280	0	-	0.46	(0.44,0.476]	chr13	530696	70	INTRON	INTRON	PSPC1	ENSG00000121390.19	ENST00000471658.5:ENST00000492741.5:ENST00000635562.1:ENST00000338910.9:ENST00000619300.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	13	283	2	3.15739	3.16656	3.17573	1.89165e-5	1.11441e-6	0.00354138	6.05355e-4
chr1	198268313	198268413	288778	0	+	0.49	(0.476,0.515]	chr1	33194	37	INTRON	INTRON	NEK7	ENSG00000151414.15	ENST00000367385.9:ENST00000538004.5	protein_coding	protein_coding	protein_coding	protein_coding	3	40	2	1.80284	3.166535	4.53023	0.033161	0.0119748	0.145899	0.0899583
chr5	112981171	112981271	2453423	0	+	0.44	(0.408,0.44]	chr5	235066	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	DCP2	ENSG00000172795.17	ENST00000515408.5:ENST00000513585.6:ENST00000502635.2:ENST00000510046.1:ENST00000389063.3:ENST00000674880.1:ENST00000504961.1:ENST00000512751.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	56	2	2.6542	3.16653	3.67886	0.0227514	3.86173e-4	0.117618	0.017761
chr2	197499041	197499141	1307168	0	-	0.61	(0.57,1]	chr2	136813	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HSPD1	ENSG00000144381.18	ENST00000388968.8:ENST00000426480.2:ENST00000345042.6:ENST00000452200.6:ENST00000679291.1:ENST00000677403.1:ENST00000678621.1:ENST00000678545.1:ENST00000676933.1:ENST00000678170.1:ENST00000476746.6:ENST00000678969.1:ENST00000428204.6:ENST00000418022.2:ENST00000439605.2:ENST00000440114.2:ENST00000461097.2:ENST00000677792.1:ENST00000678761.1:ENST00000677913.1:ENST00000430176.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	41	2	3.10443	3.166495	3.22856	0.00205928	3.67483e-4	0.0420839	0.017788000000000002
chr7	75412259	75412288	3338209	0	+	0.206897	[0,0.28]	chr7	310811	1	INTRON	INTRON	NSUN5P1	ENSG00000223705.10	ENST00000691741.1:ENST00000687920.1:ENST00000393633.6:ENST00000687621.1:ENST00000689022.1:ENST00000691865.1:ENST00000688076.1:ENST00000693166.1:ENST00000457988.5:ENST00000689132.1:ENST00000691132.1:ENST00000692954.1:ENST00000455158.5:ENST00000421140.6:ENST00000693244.1:ENST00000422386.5:ENST00000464979.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	6	159	2	2.40987	3.166465	3.92306	0.00145285	5.0483e-4	0.0349875	0.0208144
chr1	224996097	224996197	323033	0	+	0.36	(0.35,0.378]	chr1	37166	216	INTRON	INTRON	DNAH14	ENSG00000185842.16	ENST00000445597.6:ENST00000430092.5:ENST00000400952.7:ENST00000682510.1:ENST00000366849.5:ENST00000439375.6	protein_coding	protein_coding	protein_coding	protein_coding	2	41	2	2.14264	3.16643	4.19022	0.0274795	0.0209891	0.123904	0.122348
chr1	20767083	20767183	389658	0	-	0.49	(0.476,0.515]	chr1	46544	1	SS5_PROX	SS5_PROX:INTRON	HP1BP3	ENSG00000127483.19	ENST00000438032.6:ENST00000312239.10:ENST00000375003.6:ENST00000419948.5:ENST00000424732.5	protein_coding	protein_coding	protein_coding	protein_coding	4	46	2	1.63962	3.16641	4.6932	0.0346854	0.00753088	0.148144	0.074841
chr19	5938331	5938430	7125201	0	-	0.515152	(0.476,0.515]	chr19	717348	21	INTRON	INTRON	RANBP3	ENSG00000031823.14	ENST00000340578.10:ENST00000439268.6:ENST00000592771.5:ENST00000591092.5:ENST00000034275.12:ENST00000587479.2:ENST00000592621.5:ENST00000590623.5:ENST00000591736.5:ENST00000590953.5:ENST00000588879.5:ENST00000587159.5:ENST00000586117.5:ENST00000589353.5:ENST00000587463.5:ENST00000588010.5:ENST00000591124.5:ENST00000585339.5:ENST00000592133.5:ENST00000591881.5:ENST00000589886.5:ENST00000587263.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	46	2	1.63962	3.16641	4.6932	0.0346854	0.00753088	0.148144	0.074841
chr6	140358609	140358709	2970042	0	+	0.51	(0.476,0.515]	chr6	279019	431	INTRON	INTRON	ENSG00000288714	ENSG00000288714.1	ENST00000684511.1	lncRNA	lncRNA	lncRNA	lncRNA	7	162	2	3.13935	3.16607	3.19279	6.57024e-5	4.57431e-5	0.0067007	0.005846
chr12	132782793	132782893	5449734	0	-	0.5	(0.476,0.515]	chr12	522006	3	SS3_PROX	SS3_PROX:INTRON	GOLGA3	ENSG00000090615.16	ENST00000204726.9:ENST00000450791.8:ENST00000693666.1:ENST00000688114.1:ENST00000687190.1:ENST00000690511.1:ENST00000685283.1:ENST00000691696.1:ENST00000691636.1:ENST00000690897.1:ENST00000690465.1:ENST00000456883.7:ENST00000692253.1:ENST00000687502.1:ENST00000688772.1:ENST00000687479.1:ENST00000690709.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	201	2	3.04245	3.166005	3.28956	2.24944e-4	1.67298e-6	0.013767	7.82413e-4
chr2	8986096	8986196	1063393	0	-	0.4	(0.378,0.408]	chr2	113387	113	INTRON	INTRON	MBOAT2	ENSG00000143797.12	ENST00000305997.8:ENST00000486484.5:ENST00000477073.5:ENST00000462696.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	114	2	2.2467	3.16599	4.08528	0.00196896	9.30621e-5	0.0411469	0.00857086
chr17	59673872	59673954	6642127	0	+	0.414634	(0.408,0.44]	chr17	648618	1	SS5_PROX	SS5_PROX:INTRON	CLTC	ENSG00000141367.12	ENST00000621829.4:ENST00000393043.5:ENST00000269122.8:ENST00000579456.5:ENST00000579815.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	74	2	2.82461	3.16596	3.50731	0.00241819	8.5918e-4	0.0442901	0.0265787
chr1	28932362	28932462	59134	0	+	0.5	(0.476,0.515]	chr1	7621	172	INTRON	INTRON	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000647918.1:ENST00000646800.1:ENST00000644342.1:ENST00000646189.1:ENST00000482464.6:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000646260.1:ENST00000373798.5:ENST00000644600.1:ENST00000649674.1:ENST00000643173.1:ENST00000343067.9:ENST00000644780.1:ENST00000650265.1:ENST00000648181.1:ENST00000643604.1:ENST00000648891.1:ENST00000373797.2:ENST00000349460.9:ENST00000645184.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	72	2	3.04097	3.165855	3.29074	0.00272563	7.0601e-4	0.0467523	0.0241881
chr1	86992326	86992426	154372	0	+	0.4	(0.378,0.408]	chr1	16969	169	INTRON	INTRON	HS2ST1	ENSG00000153936.18	ENST00000370550.10:ENST00000370551.8:ENST00000687893.1:ENST00000693745.1:ENST00000689904.1:ENST00000690674.1:ENST00000591456.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	138	2	2.78965	3.1657599999999997	3.54187	2.29046e-4	9.09909e-5	0.0133403	0.00848955
chr2	39081464	39081564	1101942	0	-	0.49	(0.476,0.515]	chr2	118302	129	INTRON	INTRON	SOS1	ENSG00000115904.15	ENST00000692089.1:ENST00000402219.8:ENST00000690876.1:ENST00000395038.6:ENST00000691229.1:ENST00000689668.1:ENST00000690679.1:ENST00000461545.2:ENST00000451331.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	72	2	2.72507	3.16567	3.60627	0.0029369	7.49088e-4	0.0496505	0.0251179
chr5	146471576	146471676	2515753	0	+	0.45	(0.44,0.476]	chr5	240336	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	TCERG1	ENSG00000113649.13	ENST00000507175.5:ENST00000296702.9:ENST00000679501.2:ENST00000394421.7:ENST00000549332.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	54	2	3.12799	3.165445	3.2029	0.0050635	0.00308681	0.0621733	0.0510391
chr6	68807189	68807289	2888038	0	+	0.29	(0.28,0.32]	chr6	273730	1674	INTRON	INTRON	ADGRB3	ENSG00000135298.15	ENST00000370598.6:ENST00000684661.1:ENST00000546190.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	92	2	2.67153	3.165435	3.65934	0.00436402	0.00103147	0.060356	0.029231300000000002
chr4	152808127	152808222	2065408	0	+	0.515789	(0.515,0.57]	chr4	204409	5	INTRON	INTRON	ARFIP1	ENSG00000164144.16	ENST00000451320.6:ENST00000429148.6:ENST00000353617.7:ENST00000405727.6:ENST00000356064.3:ENST00000510831.5:ENST00000509413.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	41	2	1.56838	3.16541	4.76244	0.0424458	0.00362147	0.161763	0.0533855
chr10	14852531	14852631	4396879	0	+	0.31	(0.28,0.32]	chr10	405910	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	HSPA14	ENSG00000187522.16	ENST00000378372.8:ENST00000470430.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	28	2	2.29724	3.1653450000000003	4.03345	0.0704058	0.0554156	0.184298	0.18407
chr10	67970592	67970691	4636876	0	-	0.313131	(0.28,0.32]	chr10	426348	34	INTRON	INTRON	HERC4	ENSG00000148634.16	ENST00000277817.10:ENST00000373700.9:ENST00000412272.6:ENST00000395198.7:ENST00000473533.6:ENST00000427635.6:ENST00000460168.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	28	2	2.29724	3.1653450000000003	4.03345	0.0704058	0.0554156	0.184298	0.18407
chr10	72484392	72484492	4645499	0	-	0.32	(0.28,0.32]	chr10	427402	64	INTRON	INTRON	MICU1	ENSG00000107745.20	ENST00000361114.10:ENST00000476605.7:ENST00000642044.1:ENST00000635239.1:ENST00000418483.6:ENST00000398763.8:ENST00000489666.2:ENST00000604238.2:ENST00000603011.5:ENST00000604529.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	28	2	2.29724	3.1653450000000003	4.03345	0.0704058	0.0554156	0.184298	0.18407
chr11	45943943	45944042	4943448	0	-	0.313131	(0.28,0.32]	chr11	463286	43	INTRON	INTRON	PHF21A	ENSG00000135365.17	ENST00000676320.1:ENST00000527401.5:ENST00000323180.10:ENST00000530587.6:ENST00000693049.1:ENST00000692878.1:ENST00000690620.1:ENST00000418153.6:ENST00000525676.6:ENST00000532028.1:ENST00000689695.1:ENST00000527753.5:ENST00000534766.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	28	2	2.29724	3.1653450000000003	4.03345	0.0704058	0.0554156	0.184298	0.18407
chr2	135083259	135083359	872979	0	+	0.32	(0.28,0.32]	chr2	97740	206	INTRON	INTRON	RAB3GAP1	ENSG00000115839.19	ENST00000539493.3:ENST00000688088.1:ENST00000693554.1:ENST00000690785.1:ENST00000689880.1:ENST00000264158.13:ENST00000690208.1:ENST00000691478.1:ENST00000686114.1:ENST00000685967.1:ENST00000442034.5:ENST00000687199.1:ENST00000691339.1:ENST00000688182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	28	2	2.29724	3.1653450000000003	4.03345	0.0704058	0.0554156	0.184298	0.18407
chr2	159724626	159724725	899606	0	+	0.313131	(0.28,0.32]	chr2	99520	85	INTRON	INTRON	MARCHF7	ENSG00000136536.15	ENST00000539065.5:ENST00000259050.8:ENST00000409175.6:ENST00000421037.1:ENST00000473749.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	28	2	2.29724	3.1653450000000003	4.03345	0.0704058	0.0554156	0.184298	0.18407
chr2	191690665	191690765	960493	0	+	0.32	(0.28,0.32]	chr2	104307	50	UTR3	UTR3:EXON_MRNA	NABP1	ENSG00000173559.15	ENST00000674262.1:ENST00000674360.1:ENST00000674406.1:ENST00000674414.1:ENST00000410026.7:ENST00000674172.1:ENST00000674187.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	28	2	2.29724	3.1653450000000003	4.03345	0.0704058	0.0554156	0.184298	0.18407
chr3	44358841	44358937	1410838	0	+	0.28125	(0.28,0.32]	chr3	147995	7	UTR3	UTR3:EXON_MRNA:INTRON	TCAIM	ENSG00000179152.20	ENST00000417237.5:ENST00000383746.7:ENST00000494638.5:ENST00000396078.7:ENST00000462230.5:ENST00000412611.6:ENST00000444602.2:ENST00000342649.9:ENST00000431657.5:ENST00000417768.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	28	2	2.29724	3.1653450000000003	4.03345	0.0704058	0.0554156	0.184298	0.18407
chr4	55531121	55531220	2149751	0	-	0.282828	(0.28,0.32]	chr4	211545	207	INTRON	INTRON	CLOCK	ENSG00000134852.15	ENST00000513440.6:ENST00000381322.5:ENST00000435527.6:ENST00000506923.5:ENST00000509151.5:ENST00000513033.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	28	2	2.29724	3.1653450000000003	4.03345	0.0704058	0.0554156	0.184298	0.18407
chr4	145063687	145063786	2254412	0	-	0.30303	(0.28,0.32]	chr4	220103	96	INTRON	INTRON	ANAPC10	ENSG00000164162.14	ENST00000641499.1:ENST00000506851.5:ENST00000613466.4:ENST00000507656.6:ENST00000502651.5:ENST00000309439.9:ENST00000451299.6:ENST00000510270.5:ENST00000511466.5:ENST00000514390.5:ENST00000513054.5:ENST00000502562.5:ENST00000512680.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	28	2	2.29724	3.1653450000000003	4.03345	0.0704058	0.0554156	0.184298	0.18407
chr6	70505658	70505757	2894938	0	+	0.292929	(0.28,0.32]	chr6	274009	8	INTRON	INTRON	FAM135A	ENSG00000082269.17	ENST00000505769.5:ENST00000515323.5:ENST00000418814.7:ENST00000457062.6:ENST00000361499.7:ENST00000370479.7:ENST00000194672.11:ENST00000505868.1:ENST00000393299.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	28	2	2.29724	3.1653450000000003	4.03345	0.0704058	0.0554156	0.184298	0.18407
chr6	157057902	157058001	3009978	0	+	0.282828	(0.28,0.32]	chr6	281150	61	INTRON	INTRON	ARID1B	ENSG00000049618.24	ENST00000346085.10:ENST00000636930.2:ENST00000647938.1:ENST00000350026.10:ENST00000674190.1:ENST00000414678.7:ENST00000319584.11:ENST00000452544.2:ENST00000637887.1:ENST00000635849.1:ENST00000637003.1:ENST00000637904.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	28	2	2.29724	3.1653450000000003	4.03345	0.0704058	0.0554156	0.184298	0.18407
chr7	74184520	74184620	3332329	0	+	0.3	(0.28,0.32]	chr7	310037	2	INTRON	INTRON	EIF4H	ENSG00000106682.16	ENST00000678438.1:ENST00000489484.5:ENST00000677998.1:ENST00000495187.2:ENST00000265753.13:ENST00000353999.6:ENST00000677570.1:ENST00000677681.1:ENST00000678815.1:ENST00000679266.1:ENST00000679287.1:ENST00000479338.5:ENST00000678341.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	28	2	2.29724	3.1653450000000003	4.03345	0.0704058	0.0554156	0.184298	0.18407
chr7	76563416	76563516	3340502	0	+	0.29	(0.28,0.32]	chr7	311170	115	INTRON	INTRON	ENSG00000205485	ENSG00000205485.13	ENST00000418663.5:ENST00000450661.1:ENST00000423084.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	1	28	2	2.29724	3.1653450000000003	4.03345	0.0704058	0.0554156	0.184298	0.18407
chr7	97142472	97142572	3357208	0	+	0.29	(0.28,0.32]	chr7	313213	4	SS3_PROX	SS3_PROX:INTRON	SDHAF3	ENSG00000196636.8	ENST00000432641.3:ENST00000489852.1:ENST00000360382.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	28	2	2.29724	3.1653450000000003	4.03345	0.0704058	0.0554156	0.184298	0.18407
chr7	106788339	106788439	3376203	0	+	0.29	(0.28,0.32]	chr7	316138	56	INTRON	INTRON	LINC02577	ENSG00000228742.11	ENST00000658697.1:ENST00000490162.3	lncRNA	lncRNA	lncRNA	lncRNA	1	28	2	2.29724	3.1653450000000003	4.03345	0.0704058	0.0554156	0.184298	0.18407
chr1	23325230	23325330	399397	0	-	0.32	(0.28,0.32]	chr1	47865	11	INTRON	INTRON	HNRNPR	ENSG00000125944.21	ENST00000478691.5:ENST00000302271.11:ENST00000374616.7:ENST00000374612.5:ENST00000675048.1:ENST00000606561.5:ENST00000427764.3:ENST00000463552.5:ENST00000470941.5:ENST00000476451.2	protein_coding	protein_coding	protein_coding	protein_coding	4	111	2	2.14942	3.165165	4.18091	0.0143412	4.86075e-5	0.0966737	0.00568992
chr11	2970334	2970434	4891770	0	-	0.33	(0.32,0.35]	chr11	458322	4	SS3_PROX	SS3_PROX:INTRON	NAP1L4	ENSG00000205531.13	ENST00000620138.4:ENST00000380542.9:ENST00000526115.5:ENST00000532325.6:ENST00000448187.5:ENST00000399614.6:ENST00000430811.5:ENST00000529361.5:ENST00000528968.5	protein_coding	protein_coding	protein_coding	protein_coding	6	162	2	2.99898	3.16486	3.33074	0.00148392	1.16824e-5	0.034977	0.00252017
chr1	28889993	28890093	58708	0	+	0.25	[0,0.28]	chr1	7613	24	INTRON	INTRON	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000647918.1:ENST00000646800.1:ENST00000644342.1:ENST00000646189.1:ENST00000482464.6:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	80	2	2.54624	3.164855	3.78347	0.0388449	4.61323e-4	0.143072	0.0194611
chr14	69148631	69148730	5916069	0	-	0.545455	(0.515,0.57]	chr14	562034	48	INTRON	INTRON	DCAF5	ENSG00000139990.18	ENST00000341516.10:ENST00000554215.5:ENST00000556847.5:ENST00000557386.5:ENST00000556111.1:ENST00000389997.10:ENST00000554681.1:ENST00000553943.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	47	2	2.90311	3.1647749999999997	3.42644	0.0094233	0.00106731	0.0817766	0.0300133
chr10	119051821	119051919	4704615	0	-	0.367347	(0.35,0.378]	chr10	433947	1	INTRON	INTRON	EIF3A	ENSG00000107581.13	ENST00000369144.8:ENST00000541549.2	protein_coding	protein_coding	protein_coding	protein_coding	6	149	2	2.85005	3.16474	3.47943	3.07301e-4	7.9007e-5	0.0161362	0.00739361
chr6	143177075	143177175	2976350	0	+	0.23	[0,0.28]	chr6	279149	115	INTRON	INTRON	AIG1	ENSG00000146416.19	ENST00000367601.8:ENST00000447498.5:ENST00000646199.1:ENST00000357847.9:ENST00000629020.2:ENST00000275235.8:ENST00000494282.6:ENST00000458219.1:ENST00000470265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	48	2	1.85666	3.1646	4.47254	0.0660997	0.020991	0.181924	0.122348
chr1	220224617	220224717	640354	0	-	0.32	(0.28,0.32]	chr1	75580	46	INTRON	INTRON	RAB3GAP2	ENSG00000118873.17	ENST00000358951.7:ENST00000687065.1:ENST00000686381.1:ENST00000687647.1:ENST00000692972.1:ENST00000690315.1:ENST00000691862.1:ENST00000691661.1:ENST00000690373.1:ENST00000693602.1:ENST00000692813.1:ENST00000685286.1:ENST00000688035.1:ENST00000685664.1:ENST00000690824.1:ENST00000687394.1:ENST00000690379.1:ENST00000478976.1:ENST00000237724.9:ENST00000689820.1:ENST00000474178.1:ENST00000692208.1:ENST00000688281.1:ENST00000684982.1:ENST00000475769.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	38	2	1.90263	3.1644650000000003	4.4263	0.0503272	0.0330296	0.17488	0.133816
chr17	61835836	61835936	6808657	0	-	0.29	(0.28,0.32]	chr17	672605	267	INTRON	INTRON	BRIP1	ENSG00000136492.10	ENST00000259008.7:ENST00000682755.1:ENST00000682453.1:ENST00000683039.1:ENST00000682989.1:ENST00000682589.1:ENST00000683235.1:ENST00000682477.1:ENST00000684584.1:ENST00000577598.5:ENST00000682066.1:ENST00000584322.2:ENST00000683381.1:ENST00000579028.2:ENST00000682611.1:ENST00000683692.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	38	2	1.90263	3.1644650000000003	4.4263	0.0503272	0.0330296	0.17488	0.133816
chr17	61999038	61999137	6810206	0	-	0.282828	(0.28,0.32]	chr17	672911	33	INTRON	INTRON	MED13	ENSG00000108510.10	ENST00000397786.7	protein_coding	protein_coding	protein_coding	protein_coding	2	38	2	1.90263	3.1644650000000003	4.4263	0.0503272	0.0330296	0.17488	0.133816
chr4	87028292	87028392	1994731	0	+	0.32	(0.28,0.32]	chr4	199041	205	INTRON	INTRON	AFF1	ENSG00000172493.23	ENST00000504956.5:ENST00000395146.9:ENST00000507468.5:ENST00000674009.1:ENST00000503477.5:ENST00000511442.1:ENST00000544085.6:ENST00000307808.10:ENST00000511722.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	38	2	1.90263	3.1644650000000003	4.4263	0.0503272	0.0330296	0.17488	0.133816
chr4	186500145	186500244	2308715	0	-	0.292929	(0.28,0.32]	chr4	223314	124	INTRON	INTRON	F11-AS1	ENSG00000251165.6	ENST00000505103.5:ENST00000508110.5:ENST00000508287.1	lncRNA	lncRNA	lncRNA	lncRNA	2	38	2	1.90263	3.1644650000000003	4.4263	0.0503272	0.0330296	0.17488	0.133816
chrX	121257108	121257208	7715761	0	+	0.32	(0.28,0.32]	chrX	789390	709	INTRON	INTRON	ENSG00000286163	ENSG00000286163.1	ENST00000651788.1	lncRNA	lncRNA	lncRNA	lncRNA	2	38	2	1.90263	3.1644650000000003	4.4263	0.0503272	0.0330296	0.17488	0.133816
chr16	23885282	23885382	6324253	0	+	0.46	(0.44,0.476]	chr16	605697	161	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000645517.1:ENST00000498739.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	237	2	2.87928	3.164285	3.44929	1.5956e-5	7.42039e-6	0.00301858	0.00205092
chr3	19979294	19979392	1376364	0	+	0.540816	(0.515,0.57]	chr3	145076	5	INTRON	INTRON	RAB5A	ENSG00000144566.11	ENST00000273047.9:ENST00000446547.5:ENST00000422242.1:ENST00000473608.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	63	2	2.62817	3.1642349999999997	3.7003	0.004048	3.73715e-4	0.0578376	0.0179087
chr13	50195245	50195345	5492116	0	+	0.5	(0.476,0.515]	chr13	526049	88	INTRON	INTRON	DLEU1	ENSG00000176124.15	ENST00000467721.5:ENST00000468522.5:ENST00000490577.5:ENST00000491341.5:ENST00000491615.5:ENST00000463474.7:ENST00000468168.5:ENST00000476738.5:ENST00000461527.7:ENST00000486895.5:ENST00000485007.5:ENST00000475913.5:ENST00000484529.5	lncRNA	lncRNA	lncRNA	lncRNA	3	73	2	3.15202	3.1641500000000002	3.17628	0.00455841	3.6008e-4	0.0595107	0.0169207
chr21	33547716	33547813	7397473	0	+	0.546392	(0.515,0.57]	chr21	753513	8	INTRON	INTRON	SON	ENSG00000159140.22	ENST00000356577.10:ENST00000381692.6:ENST00000695559.1:ENST00000455528.5:ENST00000300278.8:ENST00000381679.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	137	2	2.62223	3.164105	3.70598	1.14338e-4	1.95822e-5	0.00914744	0.00358497
chr15	82598438	82598538	6248010	0	-	0.48	(0.476,0.515]	chr15	596252	146	INTRON	INTRON	CPEB1	ENSG00000214575.10	ENST00000684509.1:ENST00000614918.4:ENST00000611031.4:ENST00000617958.4:ENST00000615198.4:ENST00000620182.4:ENST00000617522.4:ENST00000569257.5:ENST00000567678.1	protein_coding	protein_coding	protein_coding	protein_coding	4	52	2	1.71266	3.163925	4.61519	0.0293304	0.00528365	0.128055	0.0656295
chr3	170869081	170869177	1863160	0	-	0.354167	(0.35,0.378]	chr3	186753	3	INTRON	INTRON	RPL22L1	ENSG00000163584.18	ENST00000295830.13:ENST00000475836.5:ENST00000466674.5:ENST00000494771.5:ENST00000463836.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	94	2	1.43249	3.1638599999999997	4.89523	0.026579	0.00253947	0.123035	0.0465056
chr17	81615977	81616077	6849397	0	-	0.54	(0.515,0.57]	chr17	678231	17	INTRON	INTRON	NPLOC4	ENSG00000182446.14	ENST00000331134.11:ENST00000374747.9:ENST00000574897.5:ENST00000625705.1:ENST00000570300.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	36	2	1.81744	3.1637199999999996	4.51	0.031028	0.00809449	0.143457	0.0766625
chr1	205747566	205747665	623864	0	-	0.333333	(0.32,0.35]	chr1	74198	164	INTRON	INTRON	NUCKS1	ENSG00000069275.13	ENST00000367142.5	protein_coding	protein_coding	protein_coding	protein_coding	5	136	2	2.9371	3.163715	3.39033	3.44654e-4	2.63309e-4	0.0165103	0.0149561
chr5	10398819	10398917	2318110	0	+	0.285714	(0.28,0.32]	chr5	224668	11	INTRON	INTRON	MARCHF6	ENSG00000145495.16	ENST00000274140.10:ENST00000449913.6:ENST00000511802.5:ENST00000503788.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	12	212	2	2.18073	3.163575	4.14642	5.85994e-4	1.29077e-4	0.0220073	0.0103343
chr1	193026593	193026690	612535	0	-	0.371134	(0.35,0.378]	chr1	72454	23	INTRON	INTRON	UCHL5	ENSG00000116750.14	ENST00000367455.8:ENST00000367454.6:ENST00000420791.5:ENST00000367450.7:ENST00000367451.8:ENST00000367449.5:ENST00000367448.5:ENST00000443327.5:ENST00000421683.1	protein_coding	protein_coding	protein_coding	protein_coding	2	60	2	2.66547	3.16349	3.66151	0.0233639	4.717e-4	0.118323	0.0196294
chr2	206118902	206119001	1317494	0	-	0.535354	(0.515,0.57]	chr2	138083	42	UTR3	UTR3:EXON_MRNA	NDUFS1	ENSG00000023228.14	ENST00000233190.11	protein_coding	protein_coding	protein_coding	protein_coding	2	49	2	2.83188	3.16342	3.49496	0.0108207	9.61701e-4	0.0920575	0.0282401
chr16	89391178	89391278	6542597	0	-	0.48	(0.476,0.515]	chr16	634240	177	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000647238.1:ENST00000644045.1:ENST00000643147.1:ENST00000644139.1:ENST00000568512.6:ENST00000566973.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	72	2	2.66112	3.163385	3.66565	0.0044598	4.18031e-4	0.0592169	0.0182827
chr3	183771109	183771208	1581036	0	+	0.40404	(0.378,0.408]	chr3	163102	85	INTRON	INTRON	YEATS2	ENSG00000163872.16	ENST00000305135.10	protein_coding	protein_coding	protein_coding	protein_coding	2	34	2	2.11103	3.16333	4.21563	0.0315429	0.0266911	0.134419	0.13151
chr11	667165	667265	4889195	0	-	0.55	(0.515,0.57]	chr11	457709	70	INTRON	INTRON	DEAF1	ENSG00000177030.19	ENST00000382409.4:ENST00000527170.5:ENST00000685854.1:ENST00000683307.1:ENST00000528864.6:ENST00000525626.6:ENST00000682936.1:ENST00000690068.1:ENST00000692634.1:ENST00000687329.1:ENST00000686001.1:ENST00000689835.1:ENST00000525904.5:ENST00000530813.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	62	2	2.87626	3.1632	3.45014	0.00136224	0.00116948	0.0339121	0.0312127
chr1	26237480	26237579	49517	0	+	0.323232	(0.32,0.35]	chr1	6192	28	INTRON	INTRON	CEP85	ENSG00000130695.16	ENST00000451429.8:ENST00000640292.2:ENST00000252992.8	protein_coding	protein_coding	protein_coding	protein_coding	3	85	2	3.12146	3.163125	3.20479	0.00630799	3.7902e-4	0.0687526	0.0176313
chr17	67194730	67194824	6825316	0	-	0.414894	(0.408,0.44]	chr17	674512	3	INTRON	INTRON	HELZ	ENSG00000198265.12	ENST00000358691.10:ENST00000579953.5:ENST00000580168.5:ENST00000417253.7:ENST00000580662.5	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:nonsense_mediated_decay:processed_transcript	3	77	2	2.89795	3.163115	3.42828	0.0110735	9.1223e-5	0.0873897	0.00798362
chr7	101818979	101819079	3366378	0	+	0.61	(0.57,1]	chr7	315213	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000497815.5:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000607092.1:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000558469.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	30	2	1.95484	3.1631	4.37136	0.0113205	0.00345135	0.0948452	0.0517761
chr17	82916513	82916612	6695896	0	+	0.272727	[0,0.28]	chr17	655036	25	INTRON	INTRON	TBCD	ENSG00000141556.22	ENST00000682479.1:ENST00000682722.1:ENST00000684464.1:ENST00000684544.1:ENST00000681983.1:ENST00000684361.1:ENST00000683184.1:ENST00000683282.1:ENST00000684408.1:ENST00000355528.9:ENST00000683444.1:ENST00000684776.1:ENST00000683041.1:ENST00000684760.1:ENST00000684349.1:ENST00000682213.1:ENST00000539345.6:ENST00000684000.1:ENST00000684188.1:ENST00000684429.1:ENST00000682610.1:ENST00000683821.1:ENST00000682654.1:ENST00000576160.6:ENST00000571712.5:ENST00000576996.5:ENST00000683584.1:ENST00000682099.1:ENST00000684559.1:ENST00000576760.5:ENST00000683839.1:ENST00000574975.5:ENST00000572953.5:ENST00000571796.5:ENST00000682315.1:ENST00000574422.1:ENST00000576677.6:ENST00000571618.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	103	2	2.93306	3.163035	3.39301	0.00353745	0.00180892	0.0528929	0.039365700000000003
chr12	123760873	123760971	5244597	0	+	0.397959	(0.378,0.408]	chr12	498660	30	UTR3	UTR3:EXON_MRNA	ATP6V0A2	ENSG00000185344.15	ENST00000330342.8	protein_coding	protein_coding	protein_coding	protein_coding	2	58	2	2.92665	3.1626849999999997	3.39872	0.0086017	0.0019852	0.083729	0.0404516
chr1	212745798	212745898	634320	0	-	0.53	(0.515,0.57]	chr1	74949	58	INTRON	INTRON	NSL1	ENSG00000117697.15	ENST00000366977.8:ENST00000366978.5:ENST00000366976.3:ENST00000626725.1	protein_coding	protein_coding	protein_coding	protein_coding	5	99	2	3.01498	3.16259	3.3102	1.88344e-4	1.49781e-4	0.012549	0.0106137
chr3	136189698	136189798	1824173	0	-	0.37	(0.35,0.378]	chr3	183518	366	INTRON	INTRON	MSL2	ENSG00000174579.4	ENST00000309993.3:ENST00000434835.2:ENST00000481989.1:ENST00000491050.1:ENST00000473093.1	protein_coding	protein_coding	protein_coding	protein_coding	3	80	2	2.82526	3.162465	3.49967	0.00269503	9.80974e-4	0.0466389	0.0287765
chr19	47265146	47265246	7084791	0	+	0.52	(0.515,0.57]	chr19	708859	2	SS5_PROX	SS5_PROX:INTRON	CCDC9	ENSG00000105321.14	ENST00000643617.1:ENST00000221922.11	protein_coding	protein_coding	protein_coding	protein_coding	3	62	2	2.82994	3.1624499999999998	3.49496	0.00168661	9.61701e-4	0.0381778	0.0282401
chr13	99520529	99520629	5527066	0	+	0.5	(0.476,0.515]	chr13	528350	4	SS5_PROX	SS5_PROX:INTRON	TM9SF2	ENSG00000125304.10	ENST00000642475.1:ENST00000376387.5:ENST00000463709.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	96	2	2.93859	3.162425	3.38626	0.00143107	1.1754e-4	0.0340925	0.00930356
chr17	1355837	1355936	6699157	0	-	0.515152	(0.476,0.515]	chr17	655527	11	INTRON	INTRON	YWHAE	ENSG00000108953.17	ENST00000264335.13:ENST00000466227.6:ENST00000571732.5:ENST00000573026.1:ENST00000496706.1:ENST00000573196.5:ENST00000575977.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	96	2	2.93859	3.162425	3.38626	0.00143107	1.1754e-4	0.0340925	0.00930356
chr20	47511514	47511614	7281093	0	+	0.32	(0.28,0.32]	chr20	740469	91	INTRON	INTRON	NCOA3	ENSG00000124151.19	ENST00000371998.8:ENST00000372004.7:ENST00000371997.3	protein_coding	protein_coding	protein_coding	protein_coding	2	39	2	2.08149	3.162345	4.2432	0.0479043	0.031124	0.153019	0.143644
chr4	80071282	80071382	2170538	0	-	0.32	(0.28,0.32]	chr4	213939	3	SS5_PROX	SS5_PROX:INTRON	ANTXR2	ENSG00000163297.18	ENST00000403729.7:ENST00000449651.5:ENST00000679571.1:ENST00000681710.1:ENST00000680913.1:ENST00000681115.1:ENST00000404191.5:ENST00000346652.10:ENST00000307333.7:ENST00000514959.1:ENST00000506286.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	39	2	2.08149	3.162345	4.2432	0.0479043	0.031124	0.153019	0.143644
chr4	94522324	94522424	1999089	0	+	0.3	(0.28,0.32]	chr4	199554	329	INTRON	INTRON	PDLIM5	ENSG00000163110.15	ENST00000437932.5:ENST00000615540.4:ENST00000318007.9:ENST00000380180.7:ENST00000514830.5:ENST00000509333.5:ENST00000503974.5:ENST00000317968.9:ENST00000627587.2:ENST00000542407.5:ENST00000514743.5:ENST00000508216.5:ENST00000511767.3:ENST00000510099.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	39	2	2.08149	3.162345	4.2432	0.0479043	0.031124	0.153019	0.143644
chr6	119226470	119226570	3204580	0	-	0.31	(0.28,0.32]	chr6	298302	212	INTRON	INTRON	MAN1A1	ENSG00000111885.7	ENST00000368468.4	protein_coding	protein_coding	protein_coding	protein_coding	2	39	2	2.08149	3.162345	4.2432	0.0479043	0.031124	0.153019	0.143644
chr10	96856593	96856693	4503208	0	+	0.45	(0.44,0.476]	chr10	414529	224	INTRON	INTRON	LCOR	ENSG00000196233.14	ENST00000676067.1:ENST00000676257.1:ENST00000676187.1:ENST00000675151.1:ENST00000675687.1:ENST00000675251.1:ENST00000676123.1:ENST00000371103.8:ENST00000675471.1:ENST00000421806.4:ENST00000675902.1:ENST00000540664.6:ENST00000676414.1:ENST00000675537.1:ENST00000675117.1:ENST00000675125.1:ENST00000356016.7:ENST00000371097.8:ENST00000676381.1:ENST00000674796.1:ENST00000674725.1:ENST00000675971.1:ENST00000676373.1:ENST00000676314.1:ENST00000675915.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	86	2	2.63962	3.162175	3.68473	0.00126329	5.47507e-4	0.0329641	0.0215463
chr2	86623277	86623375	1171991	0	-	0.704082	(0.57,1]	chr2	125091	5	UTR5	UTR5:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RNF103	ENSG00000239305.7	ENST00000237455.5:ENST00000477307.5:ENST00000472680.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	47	2	2.49621	3.16211	3.82801	0.00209832	9.41714e-5	0.0413494	0.00813008
chr9	33822216	33822316	4110274	0	+	0.49	(0.476,0.515]	chr9	374684	39	INTRON	INTRON	UBE2R2	ENSG00000107341.5	ENST00000263228.4	protein_coding	protein_coding	protein_coding	protein_coding	5	98	2	2.37295	3.16209	3.95123	0.00193884	1.50038e-4	0.0409025	0.011202
chr3	6540515	6540615	1356646	0	+	0.48	(0.476,0.515]	chr3	142508	274	INTRON	INTRON	ENSG00000189229	ENSG00000189229.12	ENST00000660158.1:ENST00000433639.1:ENST00000655754.1:ENST00000653839.1:ENST00000662846.1:ENST00000659876.1:ENST00000414438.2:ENST00000658468.1:ENST00000414603.1:ENST00000669512.1:ENST00000667028.1:ENST00000655541.1:ENST00000668643.1:ENST00000671568.1:ENST00000671036.1:ENST00000669798.1:ENST00000655753.1:ENST00000655856.1:ENST00000658398.1:ENST00000661518.1:ENST00000661279.1:ENST00000655495.1:ENST00000663041.1:ENST00000659827.1:ENST00000667716.1:ENST00000662508.1:ENST00000668416.1:ENST00000658133.1:ENST00000659651.1:ENST00000342990.4:ENST00000660054.1:ENST00000671370.1	lncRNA	lncRNA	lncRNA	lncRNA	19	413	2	3.01685	3.16204	3.30723	5.66691e-6	1.69767e-7	0.00177762	1.88633e-4
chr7	1491830	1491927	3462544	0	-	0.536082	(0.515,0.57]	chr7	323860	18	INTRON	INTRON	INTS1	ENSG00000164880.16	ENST00000404767.8:ENST00000468115.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	63	2	2.43783	3.161995	3.88616	0.00916404	1.07993e-4	0.0812949	0.00878438
chr18	73250453	73250533	6988478	0	-	0.375	(0.35,0.378]	chr18	691705	3	EXON_LNCRNA	EXON_LNCRNA:INTRON	LINC02864	ENSG00000263711.6	ENST00000584544.5:ENST00000581011.5:ENST00000581862.6:ENST00000669547.1:ENST00000661525.1:ENST00000583405.5:ENST00000582571.2	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	2	59	2	2.78212	3.16199	3.54186	0.0168532	8.14353e-4	0.103549	0.02604
chr6	18244603	18244698	3069045	0	-	0.326316	(0.32,0.35]	chr6	285188	1	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	DEK	ENSG00000124795.17	ENST00000652689.1:ENST00000652292.1:ENST00000651624.1:ENST00000515770.2:ENST00000651992.1:ENST00000507591.2:ENST00000505224.5:ENST00000244776.11:ENST00000652576.1:ENST00000512145.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	129	2	2.54689	3.16199	3.77709	5.24715e-4	5.04008e-4	0.0210958	0.0202328
chr19	3197931	3198027	6998967	0	+	0.479167	(0.476,0.515]	chr19	694100	13	INTRON	INTRON	NCLN	ENSG00000125912.11	ENST00000590671.5:ENST00000246117.9:ENST00000588428.5	protein_coding	protein_coding	protein_coding	protein_coding	3	72	2	2.69886	3.1617499999999996	3.62464	0.00385209	5.079e-4	0.0542786	0.0202328
chr12	111435327	111435427	5227883	0	+	0.52	(0.515,0.57]	chr12	495499	3	SS5_PROX	SS5_PROX:INTRON	SH2B3	ENSG00000111252.11	ENST00000341259.7:ENST00000550925.2:ENST00000538307.1	protein_coding	protein_coding	protein_coding	protein_coding	3	63	2	2.84387	3.16173	3.47959	0.0018149	8.38022e-4	0.0384415	0.0263691
chr18	181334	181433	6855057	0	+	0.373737	(0.35,0.378]	chr18	679521	6	INTRON	INTRON	USP14	ENSG00000101557.15	ENST00000582707.5:ENST00000400266.7:ENST00000261601.8:ENST00000578942.5:ENST00000383589.6:ENST00000583119.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	59	2	3.10863	3.161595	3.21456	0.00470896	0.00420814	0.0631419	0.0572185
chr10	69193547	69193642	4445207	0	+	0.494737	(0.476,0.515]	chr10	410110	4	INTRON	INTRON	SUPV3L1	ENSG00000156502.14	ENST00000359655.9:ENST00000483572.5:ENST00000422378.1:ENST00000478227.5:ENST00000486661.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	86	2	2.48789	3.1615	3.83511	0.00256502	2.63754e-4	0.0466761	0.0149561
chr8	123348673	123348773	4042143	0	-	0.25	[0,0.28]	chr8	368714	4	SS3_PROX	SS3_PROX:INTRON	ATAD2	ENSG00000156802.13	ENST00000287394.10:ENST00000517666.5:ENST00000521903.5:ENST00000519124.5:ENST00000521496.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	103	2	2.98675	3.16148	3.33621	0.00427056	0.00144853	0.0573912	0.0349199
chr1	206711747	206711847	302404	0	+	0.48	(0.476,0.515]	chr1	34692	259	INTRON	INTRON	MAPKAPK2	ENSG00000162889.11	ENST00000367103.4:ENST00000294981.8	protein_coding	protein_coding	protein_coding	protein_coding	2	35	2	1.79693	3.1614649999999997	4.526	0.0649782	0.00699701	0.179417	0.0754576
chr10	45860188	45860288	4607531	0	-	0.51	(0.476,0.515]	chr10	424439	49	INTRON	INTRON	PARGP1	ENSG00000239883.9	ENST00000440803.7:ENST00000610690.1	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript	2	35	2	1.79693	3.1614649999999997	4.526	0.0649782	0.00699701	0.179417	0.0754576
chr11	110238748	110238848	5040740	0	-	0.48	(0.476,0.515]	chr11	474680	7	INTRON	INTRON	RDX	ENSG00000137710.17	ENST00000645527.1:ENST00000530749.5:ENST00000528498.5:ENST00000528900.5:ENST00000530301.5:ENST00000647231.1:ENST00000646663.1:ENST00000645495.2:ENST00000544551.5:ENST00000530131.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	35	2	1.79693	3.1614649999999997	4.526	0.0649782	0.00699701	0.179417	0.0754576
chr18	47838329	47838429	6967778	0	-	0.48	(0.476,0.515]	chr18	689637	295	UTR3	UTR3:EXON_MRNA	SMAD2	ENSG00000175387.16	ENST00000262160.11:ENST00000402690.6:ENST00000356825.8	protein_coding	protein_coding	protein_coding	protein_coding	2	35	2	1.79693	3.1614649999999997	4.526	0.0649782	0.00699701	0.179417	0.0754576
chr5	32150172	32150272	2597274	0	-	0.26	[0,0.28]	chr5	246744	59	INTRON	INTRON	GOLPH3	ENSG00000113384.14	ENST00000265070.7:ENST00000503610.5:ENST00000512668.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	77	2	3.13926	3.16142	3.18358	0.00694532	0.00563224	0.0718189	0.0678837
chr8	128078328	128078426	3862932	0	+	0.367347	(0.35,0.378]	chr8	355579	37	INTRON	INTRON	PVT1	ENSG00000249859.13	ENST00000667305.1:ENST00000690350.1:ENST00000653522.1:ENST00000661830.1:ENST00000657289.1:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000657211.1:ENST00000653845.1:ENST00000651587.1:ENST00000692980.1:ENST00000654324.1:ENST00000657693.1:ENST00000666080.1:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000662410.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000657356.1:ENST00000657449.1:ENST00000656402.1:ENST00000667714.1:ENST00000654105.1:ENST00000664995.1:ENST00000670714.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000668123.1:ENST00000666776.1:ENST00000659912.1:ENST00000670532.1:ENST00000523068.2:ENST00000671088.1:ENST00000663461.1:ENST00000513868.6:ENST00000692433.1:ENST00000523190.7:ENST00000685606.1:ENST00000690788.1:ENST00000685634.1:ENST00000653990.1:ENST00000655783.1:ENST00000656411.1:ENST00000664742.1:ENST00000655099.1:ENST00000662709.1:ENST00000512617.7:ENST00000660122.1:ENST00000666452.1:ENST00000659666.1:ENST00000659892.1:ENST00000521600.5:ENST00000522875.5:ENST00000653497.1:ENST00000668098.1:ENST00000659106.1:ENST00000666147.1:ENST00000658350.1:ENST00000656999.1:ENST00000671092.1:ENST00000653853.1:ENST00000652492.1:ENST00000658429.1:ENST00000660781.1:ENST00000660912.1:ENST00000650930.1:ENST00000663715.1:ENST00000652883.1:ENST00000657844.1:ENST00000660659.1:ENST00000661391.1:ENST00000660146.1:ENST00000671587.1:ENST00000658018.1:ENST00000666878.1:ENST00000652993.1:ENST00000658305.1:ENST00000656077.1:ENST00000666039.1:ENST00000668619.1:ENST00000668479.1:ENST00000660069.1:ENST00000658158.1:ENST00000652728.1:ENST00000653608.1:ENST00000669509.1:ENST00000522414.2:ENST00000670535.1:ENST00000670009.1:ENST00000668215.1:ENST00000668351.1:ENST00000657682.1:ENST00000657945.1:ENST00000658065.1:ENST00000655148.1:ENST00000666223.1:ENST00000666105.1:ENST00000668480.1	lncRNA	lncRNA	lncRNA	lncRNA	3	78	2	2.87835	3.16135	3.44435	0.00179102	0.00160563	0.0380316	0.0367961
chr3	25749801	25749900	1642500	0	-	0.535354	(0.515,0.57]	chr3	168658	90	INTRON	INTRON	NGLY1	ENSG00000151092.18	ENST00000280700.10:ENST00000428257.5:ENST00000675217.1:ENST00000676225.1:ENST00000493324.5:ENST00000396649.7:ENST00000675178.1:ENST00000675680.1:ENST00000308710.9:ENST00000280699.13:ENST00000674841.1:ENST00000675234.1:ENST00000463611.2:ENST00000417874.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	114	2	2.63844	3.1613100000000003	3.68418	4.34654e-4	2.23598e-5	0.0187509	0.00386054
chr8	67125954	67126054	3777270	0	+	0.5	(0.476,0.515]	chr8	350363	24	INTRON	INTRON	CSPP1	ENSG00000104218.16	ENST00000676113.1:ENST00000675306.2:ENST00000678156.1:ENST00000262210.11:ENST00000678017.1:ENST00000675869.1:ENST00000678542.1:ENST00000677619.1:ENST00000676605.1:ENST00000676471.1:ENST00000677256.1:ENST00000676847.1:ENST00000677009.1:ENST00000675820.1:ENST00000676317.1:ENST00000677592.1:ENST00000676573.1:ENST00000678318.1:ENST00000677473.1:ENST00000674993.1:ENST00000678553.1:ENST00000679226.1:ENST00000676882.1:ENST00000675955.1:ENST00000678728.1:ENST00000677430.1:ENST00000677455.1:ENST00000678616.1:ENST00000678362.1:ENST00000679112.1:ENST00000678645.1:ENST00000676567.1:ENST00000677845.1:ENST00000519163.6:ENST00000676858.1:ENST00000678747.1:ENST00000519668.1:ENST00000676697.1:ENST00000678216.1:ENST00000677855.1:ENST00000676695.1:ENST00000677836.1:ENST00000677070.1:ENST00000678444.1:ENST00000676534.1:ENST00000678138.1:ENST00000678807.1:ENST00000677052.1:ENST00000679274.1:ENST00000679042.1:ENST00000678345.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	51	2	1.48272	3.1611700000000003	4.83962	0.0410274	0.00480934	0.161534	0.0602209
chrX	154767482	154767577	7739333	0	+	0.410526	(0.408,0.44]	chrX	792405	1	SS5_PROX	SS5_PROX:INTRON	DKC1	ENSG00000130826.19	ENST00000620277.4:ENST00000413910.6:ENST00000426673.6:ENST00000696575.1:ENST00000369550.10:ENST00000696579.1:ENST00000696578.1:ENST00000696577.1:ENST00000696576.1:ENST00000696580.1:ENST00000696581.1:ENST00000696582.1:ENST00000696583.1:ENST00000696627.1:ENST00000696628.1:ENST00000696584.1:ENST00000696585.1:ENST00000696586.1:ENST00000696587.1:ENST00000696588.1:ENST00000437719.5:ENST00000412124.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	87	2	2.79763	3.16117	3.52471	0.00112428	5.76635e-4	0.0306963	0.0218153
chr18	712059	712159	6939775	0	-	0.37	(0.35,0.378]	chr18	686445	3	SS5_PROX	SS5_PROX:INTRON	ENOSF1	ENSG00000132199.20	ENST00000647584.2:ENST00000383578.7:ENST00000340116.12:ENST00000581475.5:ENST00000580982.5:ENST00000585128.6:ENST00000584453.5:ENST00000578651.5:ENST00000585004.5:ENST00000583771.1:ENST00000580605.5:ENST00000581332.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	180	2	2.7624	3.1610750000000003	3.55975	2.88804e-4	1.87622e-5	0.0150776	0.00353645
chr13	95115921	95116001	5637999	0	-	0.3875	(0.378,0.408]	chr13	537053	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	ABCC4	ENSG00000125257.16	ENST00000645237.2:ENST00000643051.1:ENST00000643842.1:ENST00000646439.1:ENST00000644880.1:ENST00000643816.1:ENST00000536256.3:ENST00000643556.1:ENST00000629385.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	46	2	1.51223	3.160955	4.80968	0.051139	0.00679828	0.176696	0.0711802
chr14	30956542	30956642	5857173	0	-	0.33	(0.32,0.35]	chr14	556503	3	SS3_PROX	SS3_PROX:INTRON	STRN3	ENSG00000196792.12	ENST00000355683.9:ENST00000357479.10:ENST00000555358.5:ENST00000555152.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	44	2	1.78201	3.160945	4.53988	0.0365003	0.0202178	0.153759	0.109913
chr19	5100749	5100849	7004748	0	+	0.34	(0.32,0.35]	chr19	694855	179	INTRON	INTRON	KDM4B	ENSG00000127663.15	ENST00000159111.9:ENST00000611640.4:ENST00000381759.8:ENST00000536461.5:ENST00000589104.5:ENST00000588961.1:ENST00000588361.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	44	2	1.78201	3.160945	4.53988	0.0365003	0.0202178	0.153759	0.109913
chr11	65170561	65170661	4804320	0	+	0.5	(0.476,0.515]	chr11	446194	3	SS5_PROX	SS5_PROX:INTRON	SPDYC	ENSG00000204710.3	ENST00000377185.3	protein_coding	protein_coding	protein_coding	protein_coding	3	72	2	2.68023	3.16075	3.64127	0.00353671	6.42302e-4	0.0546236	0.0231685
chr10	63215996	63216096	4632883	0	-	0.25	[0,0.28]	chr10	426200	3	SS3_PROX	SS3_PROX:INTRON	JMJD1C	ENSG00000171988.20	ENST00000399262.7:ENST00000402544.5:ENST00000542921.5:ENST00000469152.5:ENST00000489372.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	124	2	2.69731	3.16071	3.62411	0.00157815	0.00153564	0.0362144	0.0362091
chr3	58111467	58111541	1438468	0	+	0.297297	(0.28,0.32]	chr3	151915	1	SS3_PROX	SS3_PROX:INTRON	FLNB	ENSG00000136068.16	ENST00000358537.7:ENST00000429972.6:ENST00000490882.5:ENST00000295956.9:ENST00000684506.1:ENST00000684607.1:ENST00000682871.1:ENST00000682868.1:ENST00000684107.1:ENST00000493452.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	47	2	1.81152	3.160665	4.50981	0.034446	0.0275554	0.147767	0.123904
chr2	229829788	229829881	1340730	0	-	0.462366	(0.44,0.476]	chr2	140415	1	INTRON	INTRON	TRIP12	ENSG00000153827.14	ENST00000675453.1:ENST00000675903.1:ENST00000283943.9:ENST00000675423.1:ENST00000389044.8:ENST00000389045.7:ENST00000479037.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	54	2	3.14559	3.160655	3.17572	0.00427037	0.00384923	0.0573912	0.0562562
chr1	70209564	70209664	142468	0	+	0.43	(0.408,0.44]	chr1	15965	34	INTRON	INTRON	SRSF11	ENSG00000116754.14	ENST00000370951.5:ENST00000463877.1:ENST00000687381.1:ENST00000370950.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	99	2	2.53189	3.1606300000000003	3.78937	8.78846e-4	3.51772e-4	0.0269932	0.0174637
chr16	58549218	58549318	6495545	0	-	0.47	(0.44,0.476]	chr16	628507	1	SS5_PROX	SS5_PROX:INTRON	CNOT1	ENSG00000125107.19	ENST00000317147.10:ENST00000569240.5:ENST00000567188.5:ENST00000441024.6:ENST00000567285.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	97	2	2.81462	3.1606050000000003	3.50659	0.00247064	5.83536e-5	0.0446195	0.00625795
chr1	227043232	227043332	648940	0	-	0.49	(0.476,0.515]	chr1	76966	26	INTRON	INTRON	CDC42BPA	ENSG00000143776.20	ENST00000366766.8:ENST00000366769.7:ENST00000334218.9:ENST00000366767.7:ENST00000448940.5:ENST00000442054.5:ENST00000366764.8:ENST00000441725.1	protein_coding	protein_coding	protein_coding	protein_coding	2	36	2	1.99197	3.1605600000000003	4.32915	0.039572	0.0124637	0.143072	0.0973643
chr4	26353926	26354026	1937004	0	+	0.56	(0.515,0.57]	chr4	194362	88	INTRON	INTRON	RBPJ	ENSG00000168214.22	ENST00000512351.5:ENST00000681799.1:ENST00000681403.1:ENST00000342295.6:ENST00000512671.6:ENST00000506956.5:ENST00000345843.8:ENST00000361572.10:ENST00000514380.5:ENST00000514807.5:ENST00000348160.9:ENST00000681506.1:ENST00000509158.6:ENST00000691085.1:ENST00000692303.1:ENST00000681856.1:ENST00000513182.5:ENST00000681025.1:ENST00000681679.1:ENST00000680210.1:ENST00000355476.8:ENST00000680140.1:ENST00000511401.5:ENST00000680511.1:ENST00000510778.7:ENST00000679698.1:ENST00000679469.1:ENST00000681484.1:ENST00000505958.6:ENST00000507561.5:ENST00000514730.5:ENST00000507574.5:ENST00000514675.5:ENST00000515573.5:ENST00000689192.1:ENST00000680928.1:ENST00000681260.1:ENST00000681093.1:ENST00000504423.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	75	2	2.28534	3.1604799999999997	4.03562	0.0061678	4.64806e-5	0.067653	0.00555027
chr1	40046777	40046877	79681	0	+	0.54	(0.515,0.57]	chr1	10330	49	INTRON	INTRON	CAP1	ENSG00000131236.18	ENST00000372797.7:ENST00000372802.5:ENST00000449311.5:ENST00000421589.5:ENST00000414893.5:ENST00000372792.7:ENST00000372805.8:ENST00000414281.5:ENST00000420216.5:ENST00000372798.5:ENST00000340450.7:ENST00000435719.5:ENST00000427843.5:ENST00000424977.1:ENST00000417287.5:ENST00000446031.1	protein_coding	protein_coding	protein_coding	protein_coding	2	33	2	2.15051	3.1604400000000004	4.17037	0.0238113	0.0139194	0.118889	0.10247
chr14	21262891	21262988	5835102	0	-	0.319588	(0.28,0.32]	chr14	554468	4	UTR5	UTR5:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HNRNPC	ENSG00000092199.19	ENST00000336053.10:ENST00000553300.6:ENST00000554969.5:ENST00000556142.5:ENST00000554455.5:ENST00000430246.6:ENST00000553753.5:ENST00000555309.5:ENST00000555914.5:ENST00000557442.5:ENST00000556628.5:ENST00000556513.5:ENST00000555883.5:ENST00000557201.5:ENST00000420743.6:ENST00000554539.5:ENST00000554383.5:ENST00000555215.5:ENST00000555137.5:ENST00000554891.5:ENST00000556226.5:ENST00000555176.5:ENST00000553614.5:ENST00000557336.1:ENST00000557768.1:ENST00000557033.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	123	2	2.82151	3.160285	3.49906	0.00341865	9.90686e-5	0.0517761	0.00838338
chr6	159752763	159752861	3022650	0	+	0.530612	(0.515,0.57]	chr6	281925	24	INTRON	INTRON	WTAP	ENSG00000146457.16	ENST00000358372.8:ENST00000650096.1:ENST00000621533.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	62	2	2.78208	3.16026	3.53844	0.00209264	7.92613e-4	0.0424943	0.0259663
chr11	68194941	68195041	4973021	0	-	0.46	(0.44,0.476]	chr11	469521	44	INTRON	INTRON	KMT5B	ENSG00000110066.15	ENST00000304363.9:ENST00000427752.6:ENST00000405515.5:ENST00000401547.6:ENST00000402789.5:ENST00000402185.6:ENST00000453170.5:ENST00000458496.1:ENST00000434573.1:ENST00000466295.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	41	2	1.98146	3.160225	4.33899	0.0206616	0.0186013	0.117264	0.110999
chr10	89720106	89720206	4484751	0	+	0.35	(0.32,0.35]	chr10	412756	4	SS5_PROX	SS5_PROX:INTRON	KIF20B	ENSG00000138182.15	ENST00000371728.8:ENST00000260753.8	protein_coding	protein_coding	protein_coding	protein_coding	2	36	2	1.95271	3.1601299999999997	4.36755	0.0431213	0.0300552	0.162255	0.129138
chr2	188262831	188262931	1295149	0	-	0.34	(0.32,0.35]	chr2	135671	339	INTRON	INTRON	LINC01090	ENSG00000231689.3	ENST00000434418.2:ENST00000632331.1:ENST00000415357.1	lncRNA	lncRNA	lncRNA	lncRNA	2	36	2	1.95271	3.1601299999999997	4.36755	0.0431213	0.0300552	0.162255	0.129138
chr7	128565921	128566021	3407703	0	+	0.33	(0.32,0.35]	chr7	318333	318	INTRON	INTRON	ENSG00000280828	ENSG00000280828.1	ENST00000479267.2	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	2	36	2	1.95271	3.1601299999999997	4.36755	0.0431213	0.0300552	0.162255	0.129138
chr1	169798257	169798356	252103	0	+	0.50505	(0.476,0.515]	chr1	29853	19	INTRON	INTRON	C1orf112	ENSG00000000460.17	ENST00000498289.5:ENST00000472795.5:ENST00000359326.9:ENST00000481744.5:ENST00000496973.5:ENST00000459772.5:ENST00000466580.6:ENST00000286031.10:ENST00000413811.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	54	2	3.07422	3.1600900000000003	3.24596	0.00506023	0.00322919	0.0646039	0.0507087
chr3	41722460	41722560	1667999	0	-	0.52	(0.515,0.57]	chr3	170539	42	INTRON	INTRON	ULK4	ENSG00000168038.11	ENST00000301831.9	protein_coding	protein_coding	protein_coding	protein_coding	6	98	2	2.6985	3.16007	3.62164	5.41944e-4	1.37652e-4	0.0215026	0.010101
chr2	20283786	20283886	1076101	0	-	0.37	(0.35,0.378]	chr2	114975	3	SS3_PROX	SS3_PROX:INTRON	PUM2	ENSG00000055917.16	ENST00000338086.9:ENST00000361078.7:ENST00000440577.5	protein_coding	protein_coding	protein_coding	protein_coding	3	43	2	1.92704	3.160035	4.39303	0.0237246	0.0228255	0.125469	0.118716
chr1	150111824	150111924	220676	0	+	0.39	(0.378,0.408]	chr1	24878	8	INTRON	INTRON	VPS45	ENSG00000136631.15	ENST00000643970.1:ENST00000535106.5:ENST00000369128.9:ENST00000611412.4:ENST00000644510.2:ENST00000491789.2:ENST00000642919.1:ENST00000644526.1:ENST00000477558.2:ENST00000618148.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	27	2	2.2259	3.1598450000000002	4.09379	0.0662381	0.023912	0.181924	0.129075
chr2	202906373	202906472	1315413	0	-	0.40404	(0.378,0.408]	chr2	137992	49	INTRON	INTRON	WDR12	ENSG00000138442.11	ENST00000688520.1:ENST00000261015.5:ENST00000477723.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	27	2	2.2259	3.1598450000000002	4.09379	0.0662381	0.023912	0.181924	0.129075
chr20	46346567	46346665	7346474	0	-	0.387755	(0.378,0.408]	chr20	749032	7	UTR3	UTR3:EXON_MRNA	SLC35C2	ENSG00000080189.15	ENST00000543605.5:ENST00000372230.10	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	2.2259	3.1598450000000002	4.09379	0.0662381	0.023912	0.181924	0.129075
chr21	18612493	18612593	7433927	0	-	0.4	(0.378,0.408]	chr21	758111	2	SS3_PROX	SS3_PROX:INTRON	MIR548XHG	ENSG00000224141.6	ENST00000671206.1:ENST00000437492.6:ENST00000355189.7:ENST00000653218.1:ENST00000656413.1:ENST00000414582.1	lncRNA	lncRNA	lncRNA	lncRNA	1	27	2	2.2259	3.1598450000000002	4.09379	0.0662381	0.023912	0.181924	0.129075
chr6	24419640	24419740	2835557	0	+	0.39	(0.378,0.408]	chr6	265780	5	INTRON	INTRON	MRS2	ENSG00000124532.15	ENST00000274747.11:ENST00000443868.6:ENST00000378386.8:ENST00000378353.5	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	2.2259	3.1598450000000002	4.09379	0.0662381	0.023912	0.181924	0.129075
chr3	12839862	12839951	1617495	0	-	0.438202	(0.408,0.44]	chr3	167018	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPL32	ENSG00000144713.13	ENST00000429711.7:ENST00000396957.5:ENST00000273223.10:ENST00000435983.5:ENST00000396953.6:ENST00000457131.1:ENST00000452606.2:ENST00000434963.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	45	2	1.78881	3.159845	4.53088	0.0370259	0.00669275	0.139194	0.0738715
chr10	11600901	11601000	4555962	0	-	0.464646	(0.44,0.476]	chr10	420468	28	INTRON	INTRON	USP6NL	ENSG00000148429.15	ENST00000609104.6:ENST00000606752.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	42	2	2.08211	3.15983	4.23755	0.0263357	0.0130715	0.122221	0.0996047
chr9	131395062	131395162	4216979	0	+	0.43	(0.408,0.44]	chr9	386720	4	INTRON	INTRON	PRRC2B	ENSG00000288701.1	ENST00000682525.1:ENST00000684596.1:ENST00000683519.1:ENST00000682501.1	protein_coding	protein_coding	protein_coding	protein_coding	8	184	2	2.59309	3.1598100000000002	3.72653	3.10676e-4	4.88569e-6	0.0158045	0.00163457
chr5	54108909	54109009	2618896	0	-	0.24	[0,0.28]	chr5	248841	330	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	142	2	2.39627	3.159665	3.92306	0.00264102	5.0483e-4	0.0473326	0.0208144
chr10	50415964	50416064	4618605	0	-	0.4	(0.378,0.408]	chr10	425422	713	INTRON	INTRON	SGMS1	ENSG00000198964.14	ENST00000429490.5:ENST00000361781.7:ENST00000619438.4:ENST00000492601.2:ENST00000609445.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	76	2	2.61188	3.159585	3.70729	0.0047055	5.5156e-4	0.0631419	0.0216014
chr10	35450768	35450868	4425649	0	+	0.45	(0.44,0.476]	chr10	407912	162	INTRON	INTRON	CCNY	ENSG00000108100.18	ENST00000374706.5:ENST00000490012.6:ENST00000493157.6:ENST00000374704.8:ENST00000265375.13:ENST00000339497.7:ENST00000492478.5:ENST00000470025.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	48	2	1.88483	3.1593	4.43377	0.0162803	0.0149825	0.107704	0.101453
chr14	103686329	103686427	5828235	0	+	0.367347	(0.35,0.378]	chr14	553126	8	UTR3	UTR3:EXON_MRNA:INTRON	KLC1	ENSG00000126214.22	ENST00000348520.10:ENST00000334553.11:ENST00000389744.8:ENST00000555836.5:ENST00000347839.10:ENST00000452929.6:ENST00000554280.5:ENST00000557450.5:ENST00000554228.5:ENST00000634686.1:ENST00000246489.11:ENST00000537046.6:ENST00000535194.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	36	2	2.23043	3.159295	4.08816	0.046021	0.0187487	0.149888	0.117523
chr15	49135591	49135687	6167617	0	-	0.375	(0.35,0.378]	chr15	587868	7	INTRON	INTRON	COPS2	ENSG00000166200.15	ENST00000388901.10:ENST00000299259.10:ENST00000542928.5:ENST00000558843.5:ENST00000561248.1:ENST00000559016.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	36	2	2.23043	3.159295	4.08816	0.046021	0.0187487	0.149888	0.117523
chr11	85981565	85981644	5013942	0	-	0.417722	(0.408,0.44]	chr11	472928	4	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000530692.5:ENST00000630913.2:ENST00000529760.5:ENST00000528398.5:ENST00000532603.5:ENST00000356360.9:ENST00000529016.5:ENST00000526961.5:ENST00000530542.1:ENST00000534375.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	15	333	2	2.93004	3.1592849999999997	3.38853	2.55305e-5	2.11266e-7	0.0041665	2.17494e-4
chr14	67243179	67243279	5763793	0	+	0.48	(0.476,0.515]	chr14	546811	8	INTRON	INTRON	PALS1	ENSG00000072415.10	ENST00000677382.1:ENST00000676464.1:ENST00000676950.1:ENST00000677222.1:ENST00000555925.5:ENST00000556345.6:ENST00000261681.9:ENST00000554208.1:ENST00000557783.1:ENST00000678380.1:ENST00000557237.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	72	2	2.49941	3.1591750000000003	3.81894	0.00811651	1.96038e-4	0.0766625	0.0122528
chr2	75984955	75985055	818009	0	+	0.53	(0.515,0.57]	chr2	91391	1121	INTRON	INTRON	ENSG00000287474	ENSG00000287474.1	ENST00000670606.1	lncRNA	lncRNA	lncRNA	lncRNA	3	40	2	1.91916	3.15908	4.399	0.0231902	0.00708863	0.118148	0.0754923
chr15	80108736	80108836	6071530	0	+	0.51	(0.476,0.515]	chr15	578328	98	INTRON	INTRON	ZFAND6	ENSG00000086666.19	ENST00000613266.4:ENST00000561060.5:ENST00000559157.5:ENST00000261749.11:ENST00000561012.5:ENST00000564367.5:ENST00000558494.5:ENST00000618205.4:ENST00000560470.5:ENST00000560228.5:ENST00000559835.5:ENST00000559775.5:ENST00000558688.5:ENST00000560976.5:ENST00000560392.5:ENST00000558390.5:ENST00000558272.5:ENST00000557793.1:ENST00000616533.4:ENST00000558087.5:ENST00000558997.5:ENST00000558724.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	38	2	2.21677	3.15895	4.10113	0.0226984	0.0207026	0.124921	0.110999
chr16	67136508	67136607	6366549	0	+	0.282828	(0.28,0.32]	chr16	611493	3	INTRON	INTRON	PHAF1	ENSG00000125149.12	ENST00000219139.8:ENST00000563853.6:ENST00000569914.5:ENST00000569600.5	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	2.18975	3.15891	4.12807	0.0776042	0.0338135	0.196285	0.146709
chr7	44415967	44416066	3527540	0	-	0.292929	(0.28,0.32]	chr7	328965	23	INTRON	INTRON	NUDCD3	ENSG00000015676.18	ENST00000355451.8:ENST00000460110.5:ENST00000493613.5:ENST00000472246.5:ENST00000464812.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	31	2	2.18975	3.15891	4.12807	0.0776042	0.0338135	0.196285	0.146709
chr8	132815688	132815788	3865586	0	+	0.29	(0.28,0.32]	chr8	355859	9	EXON_MRNA	EXON_MRNA:INTRON	PHF20L1	ENSG00000129292.21	ENST00000622263.4:ENST00000220847.8:ENST00000395383.5:ENST00000361997.9:ENST00000395386.7:ENST00000315808.14:ENST00000395390.6:ENST00000486199.5:ENST00000469979.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	31	2	2.18975	3.15891	4.12807	0.0776042	0.0338135	0.196285	0.146709
chr9	112494812	112494912	4185868	0	+	0.3	(0.28,0.32]	chr9	381813	73	INTRON	INTRON	KIAA1958	ENSG00000165185.15	ENST00000337530.11:ENST00000536272.5:ENST00000374244.3	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	2.18975	3.15891	4.12807	0.0776042	0.0338135	0.196285	0.146709
chrX	75098279	75098360	7842443	0	-	0.283951	(0.28,0.32]	chrX	799874	4	INTRON	INTRON	ABCB7	ENSG00000131269.19	ENST00000373394.8:ENST00000253577.9:ENST00000666534.1:ENST00000669573.1:ENST00000644766.1:ENST00000339447.8:ENST00000645829.3:ENST00000620875.5:ENST00000663420.1:ENST00000529949.5:ENST00000669388.1:ENST00000534524.5:ENST00000526404.2:ENST00000643632.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	31	2	2.18975	3.15891	4.12807	0.0776042	0.0338135	0.196285	0.146709
chr1	17037910	17038010	384477	0	-	0.52	(0.515,0.57]	chr1	45412	44	INTRON	INTRON	SDHB	ENSG00000117118.10	ENST00000375499.8:ENST00000485515.5:ENST00000491274.5:ENST00000475506.1:ENST00000463045.2:ENST00000466613.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	22	2	2.23241	3.158895	4.08538	0.0581268	0.0253843	0.188651	0.12011
chr1	31049223	31049323	412731	0	-	0.57	(0.515,0.57]	chr1	49733	200	INTRON	INTRON	PUM1	ENSG00000134644.16	ENST00000426105.7:ENST00000373747.7:ENST00000257075.9:ENST00000424085.6:ENST00000525843.5:ENST00000440538.6:ENST00000373741.8:ENST00000373742.6:ENST00000526215.5:ENST00000525948.5:ENST00000480602.1:ENST00000524516.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	22	2	2.23241	3.158895	4.08538	0.0581268	0.0253843	0.188651	0.12011
chr1	150854373	150854472	552765	0	-	0.545455	(0.515,0.57]	chr1	65018	7	INTRON	INTRON	ARNT	ENSG00000143437.21	ENST00000358595.10:ENST00000471844.6:ENST00000354396.6:ENST00000515192.5:ENST00000505755.5:ENST00000497108.6:ENST00000505979.5:ENST00000504358.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	22	2	2.23241	3.158895	4.08538	0.0581268	0.0253843	0.188651	0.12011
chr10	102316259	102316359	4513360	0	+	0.53	(0.515,0.57]	chr10	415732	10	INTRON	INTRON	GBF1	ENSG00000107862.7	ENST00000676513.1:ENST00000676939.1:ENST00000677439.1:ENST00000677240.1:ENST00000677618.1:ENST00000679155.1:ENST00000679280.1:ENST00000678036.1:ENST00000678476.1:ENST00000678504.1:ENST00000677247.1:ENST00000677655.1:ENST00000678351.1:ENST00000679238.1:ENST00000677487.1:ENST00000677506.1:ENST00000678666.1:ENST00000676560.1:ENST00000673650.1:ENST00000674034.1:ENST00000369983.5:ENST00000679003.1:ENST00000678486.1:ENST00000676682.1:ENST00000676807.1:ENST00000676993.1:ENST00000678575.1:ENST00000677522.1:ENST00000678293.1:ENST00000679087.1:ENST00000677683.1:ENST00000676861.1:ENST00000677491.1:ENST00000677461.1:ENST00000677871.1:ENST00000677431.1:ENST00000677852.1:ENST00000678401.1:ENST00000677956.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	22	2	2.23241	3.158895	4.08538	0.0581268	0.0253843	0.188651	0.12011
chr12	123218075	123218175	5443909	0	-	0.54	(0.515,0.57]	chr12	520845	3	SS5_PROX	SS5_PROX:INTRON	MPHOSPH9	ENSG00000051825.15	ENST00000606320.6:ENST00000541076.6:ENST00000545556.6:ENST00000302373.8:ENST00000539024.5:ENST00000539336.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	22	2	2.23241	3.158895	4.08538	0.0581268	0.0253843	0.188651	0.12011
chr17	40045622	40045721	6767851	0	-	0.525253	(0.515,0.57]	chr17	665829	91	INTRON	INTRON	MED24	ENSG00000008838.21	ENST00000394126.5:ENST00000356271.7:ENST00000394128.7:ENST00000394127.6:ENST00000535508.6:ENST00000501516.7:ENST00000535071.6:ENST00000580885.5:ENST00000578901.1:ENST00000428757.6:ENST00000580008.5:ENST00000479829.5:ENST00000543759.6:ENST00000585306.5:ENST00000537674.6:ENST00000582023.5:ENST00000580517.5:ENST00000578161.2:ENST00000581054.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	22	2	2.23241	3.158895	4.08538	0.0581268	0.0253843	0.188651	0.12011
chr19	6249860	6249960	7128125	0	-	0.52	(0.515,0.57]	chr19	717607	188	INTRON	INTRON	MLLT1	ENSG00000130382.9	ENST00000252674.9	protein_coding	protein_coding	protein_coding	protein_coding	1	22	2	2.23241	3.158895	4.08538	0.0581268	0.0253843	0.188651	0.12011
chr22	17971019	17971118	7550135	0	-	0.545455	(0.515,0.57]	chr22	771756	638	INTRON	INTRON	MICAL3	ENSG00000243156.9	ENST00000441493.7:ENST00000672019.1:ENST00000495076.5:ENST00000424046.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	22	2	2.23241	3.158895	4.08538	0.0581268	0.0253843	0.188651	0.12011
chr4	152437284	152437384	2274100	0	-	0.55	(0.515,0.57]	chr4	221114	244	INTRON	INTRON	FBXW7	ENSG00000109670.16	ENST00000281708.10:ENST00000603548.6:ENST00000604872.6:ENST00000647166.1:ENST00000643834.1:ENST00000642901.1	protein_coding	protein_coding	protein_coding	protein_coding	1	22	2	2.23241	3.158895	4.08538	0.0581268	0.0253843	0.188651	0.12011
chr6	169696662	169696761	3267076	0	-	0.525253	(0.515,0.57]	chr6	303259	12	INTRON	INTRON	WDR27	ENSG00000184465.16	ENST00000448612.6:ENST00000648472.1:ENST00000423258.5:ENST00000647790.1:ENST00000647873.1:ENST00000649303.1:ENST00000647889.1:ENST00000648017.1:ENST00000650296.1:ENST00000546953.1:ENST00000649806.1:ENST00000474018.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	22	2	2.23241	3.158895	4.08538	0.0581268	0.0253843	0.188651	0.12011
chr7	5217462	5217554	3272242	0	+	0.532609	(0.515,0.57]	chr7	304124	4	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	WIPI2	ENSG00000157954.15	ENST00000401525.7:ENST00000288828.9:ENST00000404704.7:ENST00000466014.5:ENST00000382384.6:ENST00000496867.5:ENST00000475309.5:ENST00000484262.1:ENST00000465102.5:ENST00000480238.5:ENST00000488359.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	22	2	2.23241	3.158895	4.08538	0.0581268	0.0253843	0.188651	0.12011
chr9	63977395	63977494	4262590	0	-	0.535354	(0.515,0.57]	chr9	392248	22	INTRON	INTRON	ENSG00000204790	ENSG00000204790.9	ENST00000485382.3	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	1	22	2	2.23241	3.158895	4.08538	0.0581268	0.0253843	0.188651	0.12011
chr7	32889383	32889482	3515600	0	-	0.525253	(0.515,0.57]	chr7	327782	91	INTRON	INTRON	KBTBD2	ENSG00000170852.12	ENST00000304056.9:ENST00000485611.5:ENST00000452926.1:ENST00000453627.1:ENST00000423022.1:ENST00000424468.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	38	2	1.63184	3.15876	4.68568	0.0545832	0.00270027	0.165292	0.0479115
chr19	38627902	38628002	7065626	0	+	0.48	(0.476,0.515]	chr19	705450	14	INTRON	INTRON	EIF3K	ENSG00000178982.10	ENST00000614624.4:ENST00000593149.5:ENST00000588934.5:ENST00000538434.5:ENST00000593062.5:ENST00000248342.9:ENST00000545173.6:ENST00000591409.5:ENST00000586513.4:ENST00000592558.1:ENST00000588299.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	161	2	3.12466	3.158725	3.19279	6.57024e-5	4.9835e-5	0.0067007	0.00611327
chr1	223845253	223845353	643372	0	-	0.42	(0.408,0.44]	chr1	75965	2	SS5_PROX	SS5_PROX:INTRON	TP53BP2	ENSG00000143514.17	ENST00000343537.12:ENST00000391878.6:ENST00000465119.1:ENST00000472180.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	72	2	2.906	3.1587199999999998	3.41144	0.00178336	0.00131817	0.0379201	0.0333932
chr10	68346358	68346449	4638530	0	-	0.406593	(0.378,0.408]	chr10	426528	4	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	RUFY2	ENSG00000204130.14	ENST00000466493.5:ENST00000484083.5:ENST00000463210.6:ENST00000466187.2:ENST00000602465.6:ENST00000388768.6:ENST00000265865.3:ENST00000473398.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	33	2	1.81685	3.1587050000000003	4.50056	0.0597868	0.015974	0.189982	0.101453
chr11	31721055	31721155	4762942	0	+	0.38	(0.378,0.408]	chr11	440436	12	INTRON	INTRON	ELP4	ENSG00000109911.19	ENST00000379163.10:ENST00000350638.10:ENST00000640961.2:ENST00000640081.1:ENST00000640231.1:ENST00000638917.1:ENST00000395934.2:ENST00000638184.1:ENST00000640790.1:ENST00000638828.1:ENST00000639182.1:ENST00000638317.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	33	2	1.81685	3.1587050000000003	4.50056	0.0597868	0.015974	0.189982	0.101453
chr3	142003544	142003644	1833981	0	-	0.38	(0.378,0.408]	chr3	184334	28	INTRON	INTRON	TFDP2	ENSG00000114126.18	ENST00000489671.6:ENST00000486111.5:ENST00000477292.5:ENST00000495310.5:ENST00000467072.5:ENST00000487734.5:ENST00000479040.5:ENST00000467667.5:ENST00000478006.5:ENST00000497579.5:ENST00000464782.5:ENST00000488107.6:ENST00000475734.5:ENST00000471095.5:ENST00000494358.5:ENST00000467634.1:ENST00000495095.6:ENST00000476617.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	33	2	1.81685	3.1587050000000003	4.50056	0.0597868	0.015974	0.189982	0.101453
chrX	153342484	153342584	7737581	0	+	0.38	(0.378,0.408]	chrX	791778	54	INTRON	INTRON	ZNF275	ENSG00000063587.15	ENST00000370249.3:ENST00000650114.2:ENST00000370251.3	protein_coding	protein_coding	protein_coding	protein_coding	2	33	2	1.81685	3.1587050000000003	4.50056	0.0597868	0.015974	0.189982	0.101453
chr11	470507	470606	4719106	0	+	0.363636	(0.35,0.378]	chr11	436010	96	INTRON	INTRON	PTDSS2	ENSG00000174915.12	ENST00000532614.5:ENST00000308020.6:ENST00000531520.5:ENST00000525727.5:ENST00000527479.5:ENST00000526878.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	28	2	2.24535	3.158605	4.07186	0.0647516	0.0279478	0.179192	0.137011
chr11	111739637	111739735	5041471	0	-	0.357143	(0.35,0.378]	chr11	474777	19	UTR3	UTR3:EXON_MRNA:INTRON	PPP2R1B	ENSG00000137713.16	ENST00000311129.9:ENST00000426998.6:ENST00000527614.6	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	2.24535	3.158605	4.07186	0.0647516	0.0279478	0.179192	0.137011
chr17	60499306	60499405	6806787	0	-	0.363636	(0.35,0.378]	chr17	672467	25	INTRON	INTRON	APPBP2	ENSG00000062725.10	ENST00000083182.8:ENST00000589341.5:ENST00000590244.1:ENST00000588668.5:ENST00000585368.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	28	2	2.24535	3.158605	4.07186	0.0647516	0.0279478	0.179192	0.137011
chr17	67720944	67721027	6667439	0	+	0.373494	(0.35,0.378]	chr17	650458	1	SS3_PROX	SS3_PROX:INTRON	NOL11	ENSG00000130935.10	ENST00000581106.5:ENST00000253247.9:ENST00000581375.5:ENST00000581966.5:ENST00000584942.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	28	2	2.24535	3.158605	4.07186	0.0647516	0.0279478	0.179192	0.137011
chr18	62720456	62720556	6922614	0	+	0.36	(0.35,0.378]	chr18	685172	28	INTRON	INTRON	PHLPP1	ENSG00000081913.14	ENST00000262719.10	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	2.24535	3.158605	4.07186	0.0647516	0.0279478	0.179192	0.137011
chr3	194418588	194418687	1890482	0	-	0.373737	(0.35,0.378]	chr3	189102	31	INTRON	INTRON	ATP13A3	ENSG00000133657.17	ENST00000687055.1:ENST00000645538.1:ENST00000645319.2:ENST00000690810.1:ENST00000429136.7:ENST00000645621.1:ENST00000461660.2:ENST00000685123.1:ENST00000642744.2:ENST00000439040.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	28	2	2.24535	3.158605	4.07186	0.0647516	0.0279478	0.179192	0.137011
chr1	180476791	180476890	595575	0	-	0.343434	(0.32,0.35]	chr1	71198	462	INTRON	INTRON	ACBD6	ENSG00000230124.8	ENST00000645415.1:ENST00000642319.1:ENST00000367595.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	62	2	2.9451	3.1586	3.3721	0.011051	0.00182912	0.0873897	0.0396683
chr16	75007969	75008069	6389508	0	+	0.38	(0.378,0.408]	chr16	614482	52	INTRON	INTRON	ZNRF1	ENSG00000186187.12	ENST00000335325.9:ENST00000320619.10:ENST00000567962.5:ENST00000566250.5:ENST00000564320.1:ENST00000568511.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	165	2	3.07231	3.15854	3.24477	9.20289e-5	4.3162e-5	0.0085356	0.00532008
chr7	111297790	111297890	3621460	0	-	0.29	(0.28,0.32]	chr7	337093	3339	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	147	2	3.13172	3.15853	3.18534	8.08132e-4	1.46635e-4	0.0263656	0.0105341
chr19	15302843	15302943	7147109	0	-	0.56	(0.515,0.57]	chr19	721965	225	INTRON	INTRON	BRD4	ENSG00000141867.19	ENST00000679869.1:ENST00000360016.9:ENST00000594841.5:ENST00000597315.5:ENST00000601941.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	30	2	2.11313	3.15847	4.20381	0.0256725	0.0189208	0.133676	0.108861
chr6	110996082	110996182	2939444	0	+	0.41	(0.408,0.44]	chr6	276859	39	INTRON	INTRON	RPF2	ENSG00000197498.13	ENST00000368864.8:ENST00000441448.7:ENST00000607388.1:ENST00000425871.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	54	2	2.95296	3.15837	3.36378	0.00929354	0.0016048	0.0817766	0.0367961
chr12	53473288	53473386	5143115	0	+	0.561224	(0.515,0.57]	chr12	485448	11	INTRON	INTRON	PCBP2	ENSG00000197111.16	ENST00000546463.6:ENST00000437231.5:ENST00000447282.5:ENST00000359282.9:ENST00000549863.5:ENST00000359462.9:ENST00000552296.6:ENST00000552819.5:ENST00000455667.7:ENST00000439930.7:ENST00000548933.5:ENST00000562264.5:ENST00000550585.5:ENST00000553064.6:ENST00000547859.2:ENST00000547048.5:ENST00000550733.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	48	2	2.68833	3.15827	3.62821	0.0184931	4.12866e-4	0.108861	0.0181365
chr9	112074162	112074261	4315756	0	-	0.424242	(0.408,0.44]	chr9	396912	108	INTRON	INTRON	SUSD1	ENSG00000106868.17	ENST00000374270.8:ENST00000374263.7:ENST00000355396.7:ENST00000374264.6	protein_coding	protein_coding	protein_coding	protein_coding	2	54	2	3.05705	3.158265	3.25948	0.00658331	0.00246454	0.0701901	0.0459102
chr17	42470405	42470499	6611406	0	+	0.255319	[0,0.28]	chr17	644091	3	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	ATP6V0A1	ENSG00000033627.17	ENST00000393829.6:ENST00000588629.1:ENST00000343619.9:ENST00000537728.5:ENST00000588901.5:ENST00000264649.10:ENST00000585525.5:ENST00000544137.5:ENST00000589727.5:ENST00000592324.1:ENST00000587375.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	126	2	2.37401	3.158115	3.94222	0.00568456	4.67585e-4	0.0678837	0.0200132
chrX	47150089	47150189	7655126	0	+	0.41	(0.408,0.44]	chrX	783085	22	INTRON	INTRON	RBM10	ENSG00000182872.16	ENST00000377604.8:ENST00000345781.10:ENST00000628161.2:ENST00000329236.8	protein_coding	protein_coding	protein_coding	protein_coding	3	43	2	1.53263	3.158055	4.78348	0.0733439	0.00290352	0.190051	0.0494641
chr11	657240	657340	4889094	0	-	0.59	(0.57,1]	chr11	457702	28	INTRON	INTRON	DEAF1	ENSG00000177030.19	ENST00000382409.4:ENST00000527170.5:ENST00000685854.1:ENST00000683307.1:ENST00000528864.6:ENST00000525626.6:ENST00000682936.1:ENST00000690068.1:ENST00000692634.1:ENST00000687329.1:ENST00000686001.1:ENST00000689835.1:ENST00000525904.5:ENST00000530813.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	30	2	2.99729	3.15794	3.31859	0.00538023	0.00137292	0.0642754	0.0340241
chr13	28191997	28192096	5461367	0	+	0.414141	(0.408,0.44]	chr13	523255	137	INTRON	INTRON	PAN3	ENSG00000152520.14	ENST00000503791.5:ENST00000380958.8:ENST00000399613.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	98	2	3.09037	3.157835	3.2253	5.47766e-4	4.07735e-4	0.0212924	0.0185763
chr1	25341374	25341473	47729	0	+	0.575758	(0.57,1]	chr1	5886	4	INTRON	INTRON	TMEM50A	ENSG00000183726.11	ENST00000498135.5:ENST00000491936.5:ENST00000480937.5:ENST00000374358.5:ENST00000468704.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	30	2	3.13254	3.15777	3.183	0.00310655	0.00254356	0.0512344	0.0448135
chr17	27466729	27466828	6580868	0	+	0.616162	(0.57,1]	chr17	639655	95	INTRON	INTRON	KSR1	ENSG00000141068.15	ENST00000644974.2:ENST00000579309.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	30	2	3.13254	3.15777	3.183	0.00310655	0.00254356	0.0512344	0.0448135
chr11	63700754	63700854	4800106	0	+	0.42	(0.408,0.44]	chr11	444936	186	INTRON	INTRON	RTN3	ENSG00000133318.14	ENST00000341307.6:ENST00000356000.7:ENST00000542238.5:ENST00000538995.1:ENST00000339997.8:ENST00000540798.5:ENST00000537981.5:ENST00000377819.10:ENST00000536011.5:ENST00000543123.1:ENST00000543552.5:ENST00000545432.5:ENST00000338850.5:ENST00000354497.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	41	2	1.9831	3.15774	4.33238	0.0218901	0.018491	0.116694	0.11491
chr1	234410831	234410931	660731	0	-	0.5	(0.476,0.515]	chr1	78142	3	SS3_PROX	SS3_PROX:INTRON	TARBP1	ENSG00000059588.10	ENST00000040877.2:ENST00000463793.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	27	2	2.48527	3.157725	3.83018	0.0423385	0.03496	0.161744	0.13747500000000001
chr17	17688947	17689047	6565569	0	+	0.51	(0.476,0.515]	chr17	638202	40	INTRON	INTRON	RAI1	ENSG00000108557.20	ENST00000353383.6:ENST00000471135.2	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	2.48527	3.157725	3.83018	0.0423385	0.03496	0.161744	0.13747500000000001
chr17	59123317	59123415	6802078	0	-	0.5	(0.476,0.515]	chr17	671842	35	INTRON	INTRON	SKA2	ENSG00000182628.13	ENST00000330137.12:ENST00000580541.1:ENST00000578105.1:ENST00000578519.5:ENST00000583927.1:ENST00000581068.5:ENST00000437036.6:ENST00000583380.5:ENST00000583976.1:ENST00000584089.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	27	2	2.48527	3.157725	3.83018	0.0423385	0.03496	0.161744	0.13747500000000001
chr2	173362725	173362825	922479	0	+	0.49	(0.476,0.515]	chr2	101539	1	SS3_PROX	SS3_PROX:INTRON	CDCA7	ENSG00000144354.15	ENST00000347703.7:ENST00000695912.1:ENST00000695913.1:ENST00000306721.8:ENST00000496441.5:ENST00000410019.3:ENST00000410101.7:ENST00000695914.1:ENST00000435616.5:ENST00000467411.5:ENST00000695901.1:ENST00000468359.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	27	2	2.48527	3.157725	3.83018	0.0423385	0.03496	0.161744	0.13747500000000001
chr2	196135563	196135662	1301600	0	-	0.50505	(0.476,0.515]	chr2	136233	21	UTR3	UTR3:EXON_MRNA	STK17B	ENSG00000081320.11	ENST00000263955.9	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	2.48527	3.157725	3.83018	0.0423385	0.03496	0.161744	0.13747500000000001
chr7	2372497	2372572	3269813	0	+	0.48	(0.476,0.515]	chr7	303850	3	SS3_PROX	SS3_PROX:INTRON	EIF3B	ENSG00000106263.19	ENST00000360876.9:ENST00000397011.2	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	2.48527	3.157725	3.83018	0.0423385	0.03496	0.161744	0.13747500000000001
chr9	120493875	120493975	4333012	0	-	0.48	(0.476,0.515]	chr9	398085	20	INTRON	INTRON	CDK5RAP2	ENSG00000136861.19	ENST00000349780.9:ENST00000360190.8:ENST00000687279.1:ENST00000687633.1:ENST00000684780.1:ENST00000687311.1:ENST00000690814.1:ENST00000686842.1:ENST00000693714.1:ENST00000693386.1:ENST00000692746.1:ENST00000686376.1:ENST00000692155.1:ENST00000690646.1:ENST00000693433.1:ENST00000688923.1:ENST00000473282.6:ENST00000480112.5:ENST00000685866.1:ENST00000689688.1:ENST00000416449.6:ENST00000691504.1:ENST00000360822.8:ENST00000693728.1:ENST00000483412.5:ENST00000690474.1:ENST00000693137.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	27	2	2.48527	3.157725	3.83018	0.0423385	0.03496	0.161744	0.13747500000000001
chr10	116898120	116898219	4699412	0	-	0.464646	(0.44,0.476]	chr10	433605	112	INTRON	INTRON	SHTN1	ENSG00000187164.20	ENST00000355371.9:ENST00000615301.4:ENST00000260777.14:ENST00000497044.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	43	2	1.61163	3.15759	4.70355	0.0598319	0.00383786	0.169278	0.0562562
chr9	136072335	136072434	4373238	0	-	0.444444	(0.44,0.476]	chr9	402592	214	INTRON	INTRON	NACC2	ENSG00000148411.8	ENST00000277554.4	protein_coding	protein_coding	protein_coding	protein_coding	3	43	2	1.61163	3.15759	4.70355	0.0598319	0.00383786	0.169278	0.0562562
chr1	172562463	172562562	254986	0	+	0.474747	(0.44,0.476]	chr1	30384	43	INTRON	INTRON	SUCO	ENSG00000094975.14	ENST00000367723.8:ENST00000608151.5:ENST00000616058.4:ENST00000263688.4:ENST00000610051.5:ENST00000608804.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	33	2	2.0776	3.1575749999999996	4.23755	0.0292951	0.0263357	0.141862	0.122221
chr12	123393770	123393867	5242675	0	+	0.463918	(0.44,0.476]	chr12	498191	20	INTRON	INTRON	KMT5A	ENSG00000183955.14	ENST00000402868.8:ENST00000437519.5:ENST00000478781.6:ENST00000461103.5:ENST00000437502.1:ENST00000485469.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	33	2	2.0776	3.1575749999999996	4.23755	0.0292951	0.0263357	0.141862	0.122221
chr15	83505491	83505591	6082565	0	+	0.37	(0.35,0.378]	chr15	579050	142	INTRON	INTRON	SH3GL3	ENSG00000140600.17	ENST00000492099.1:ENST00000427482.7:ENST00000563901.5:ENST00000324537.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	79	2	2.4077	3.15747	3.90724	0.0122026	1.41179e-4	0.0910127	0.0102551
chr1	29045651	29045750	60280	0	+	0.474747	(0.44,0.476]	chr1	7705	43	INTRON	INTRON	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000647918.1:ENST00000646800.1:ENST00000644342.1:ENST00000646189.1:ENST00000482464.6:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000646260.1:ENST00000373798.5:ENST00000644600.1:ENST00000649674.1:ENST00000643173.1:ENST00000343067.9:ENST00000644780.1:ENST00000650265.1:ENST00000648181.1:ENST00000643604.1:ENST00000648891.1:ENST00000373797.2:ENST00000349460.9:ENST00000645184.1:ENST00000645111.1:ENST00000643302.1:ENST00000645999.1:ENST00000642643.1:ENST00000636666.1:ENST00000644848.1:ENST00000644470.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	26	2	2.20949	3.157445	4.1054	0.0672585	0.0220205	0.183051	0.123836
chr1	120507917	120508014	534784	0	-	0.453608	(0.44,0.476]	chr1	62878	16	INTRON	INTRON	PDE4DIPP2	ENSG00000275131.3	ENST00000612480.2	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	1	26	2	2.20949	3.157445	4.1054	0.0672585	0.0220205	0.183051	0.123836
chr1	243080518	243080615	667160	0	-	0.474227	(0.44,0.476]	chr1	79152	11	INTRON	INTRON	LINC01347	ENSG00000214837.8	ENST00000627498.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	1	26	2	2.20949	3.157445	4.1054	0.0672585	0.0220205	0.183051	0.123836
chr10	15281694	15281793	4563434	0	-	0.474747	(0.44,0.476]	chr10	421165	54	INTRON	INTRON	FAM171A1	ENSG00000148468.17	ENST00000378116.9:ENST00000455654.1	protein_coding	protein_coding	protein_coding	protein_coding	1	26	2	2.20949	3.157445	4.1054	0.0672585	0.0220205	0.183051	0.123836
chr19	2167057	2167156	6996200	0	+	0.464646	(0.44,0.476]	chr19	693417	24	INTRON	INTRON	DOT1L	ENSG00000104885.19	ENST00000398665.8:ENST00000686010.1:ENST00000452696.5:ENST00000478937.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	26	2	2.20949	3.157445	4.1054	0.0672585	0.0220205	0.183051	0.123836
chr2	222866273	222866372	1021262	0	+	0.474747	(0.44,0.476]	chr2	109244	3	INTRON	INTRON	ACSL3	ENSG00000123983.15	ENST00000392066.7:ENST00000407441.5:ENST00000680251.1:ENST00000679541.1:ENST00000681906.1:ENST00000679545.1:ENST00000679932.1:ENST00000680100.1:ENST00000680475.1:ENST00000680525.1:ENST00000680420.1:ENST00000681326.1:ENST00000681292.1:ENST00000681017.1:ENST00000680382.1:ENST00000535678.2:ENST00000680395.1:ENST00000680736.1:ENST00000679546.1:ENST00000680147.1:ENST00000357430.8:ENST00000681009.1:ENST00000679514.1:ENST00000681697.1:ENST00000680921.1:ENST00000681383.1:ENST00000413316.1:ENST00000679558.1:ENST00000680684.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	26	2	2.20949	3.157445	4.1054	0.0672585	0.0220205	0.183051	0.123836
chr6	122521071	122521171	2948162	0	+	0.47	(0.44,0.476]	chr6	277524	277	INTRON	INTRON	PKIB	ENSG00000135549.16	ENST00000615438.4:ENST00000392491.6:ENST00000608895.5:ENST00000618977.4:ENST00000583007.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	26	2	2.20949	3.157445	4.1054	0.0672585	0.0220205	0.183051	0.123836
chr7	43659939	43660037	3525681	0	-	0.459184	(0.44,0.476]	chr7	328773	4	INTRON	INTRON	COA1	ENSG00000106603.20	ENST00000415076.6:ENST00000446330.6:ENST00000446564.5:ENST00000438444.5:ENST00000223336.11:ENST00000310564.10:ENST00000415798.5:ENST00000431651.5:ENST00000451651.5:ENST00000418140.5:ENST00000448704.5:ENST00000470156.1:ENST00000457939.1:ENST00000420441.1:ENST00000478504.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	26	2	2.20949	3.157445	4.1054	0.0672585	0.0220205	0.183051	0.123836
chr8	129927110	129927210	4063035	0	-	0.45	(0.44,0.476]	chr8	369828	142	INTRON	INTRON	CYRIB	ENSG00000153310.21	ENST00000694912.1:ENST00000519824.6:ENST00000523288.5:ENST00000519110.5:ENST00000401979.6:ENST00000523509.5:ENST00000522746.5:ENST00000517654.5:ENST00000522250.5:ENST00000519540.5:ENST00000522941.5:ENST00000519142.5:ENST00000518879.5:ENST00000522702.5:ENST00000521223.5:ENST00000520204.5:ENST00000518283.5:ENST00000523993.5:ENST00000520254.5:ENST00000519020.5:ENST00000518167.5:ENST00000517672.5:ENST00000519070.5:ENST00000522361.1:ENST00000518344.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	26	2	2.20949	3.157445	4.1054	0.0672585	0.0220205	0.183051	0.123836
chr9	112161592	112161691	4316645	0	-	0.444444	(0.44,0.476]	chr9	396993	36	INTRON	INTRON	SUSD1	ENSG00000106868.17	ENST00000374270.8:ENST00000374263.7:ENST00000355396.7:ENST00000374264.6	protein_coding	protein_coding	protein_coding	protein_coding	1	26	2	2.20949	3.157445	4.1054	0.0672585	0.0220205	0.183051	0.123836
chr11	65198795	65198894	4804560	0	+	0.585859	(0.57,1]	chr11	446277	97	INTRON	INTRON	CAPN1	ENSG00000014216.16	ENST00000533820.5:ENST00000533129.5:ENST00000524773.5:ENST00000279247.11:ENST00000527323.5:ENST00000533079.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	53	2	2.39678	3.157355	3.91793	0.00143653	5.86096e-5	0.0347139	0.00668534
chr17	59654174	59654272	6641913	0	+	0.510204	(0.476,0.515]	chr17	648550	25	INTRON	INTRON	CLTC	ENSG00000141367.12	ENST00000621829.4:ENST00000393043.5:ENST00000269122.8:ENST00000579456.5:ENST00000472129.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	109	2	2.42035	3.15734	3.89433	8.0704e-4	1.98377e-4	0.0258804	0.0129156
chr10	68586120	68586219	4441144	0	+	0.454545	(0.44,0.476]	chr10	409524	115	INTRON	INTRON	TET1	ENSG00000138336.9	ENST00000373644.5	protein_coding	protein_coding	protein_coding	protein_coding	3	39	2	1.62896	3.1573	4.68564	0.0546679	0.00816201	0.182674	0.0766625
chr17	82842490	82842590	6695120	0	+	0.54	(0.515,0.57]	chr17	654907	114	INTRON	INTRON	TBCD	ENSG00000141556.22	ENST00000682479.1:ENST00000682722.1:ENST00000684464.1:ENST00000684544.1:ENST00000681983.1:ENST00000684361.1:ENST00000683184.1:ENST00000683282.1:ENST00000684408.1:ENST00000355528.9:ENST00000683444.1:ENST00000684776.1:ENST00000683041.1:ENST00000684760.1:ENST00000684349.1:ENST00000682213.1:ENST00000683009.1:ENST00000682921.1:ENST00000539345.6:ENST00000684000.1:ENST00000684188.1:ENST00000684429.1:ENST00000682610.1:ENST00000683821.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	47	2	2.83501	3.1573	3.47959	0.0117686	8.38022e-4	0.0894475	0.0263691
chr3	48964028	48964125	1421912	0	+	0.453608	(0.44,0.476]	chr3	149504	20	INTRON	INTRON	ARIH2	ENSG00000177479.20	ENST00000478224.5:ENST00000430423.5:ENST00000498314.5:ENST00000474618.5:ENST00000449376.5:ENST00000490095.5:ENST00000356401.9:ENST00000495761.5:ENST00000483333.5:ENST00000482427.5:ENST00000488963.5:ENST00000486316.5:ENST00000474936.6:ENST00000484999.5:ENST00000452385.5:ENST00000472640.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	39	2	1.62896	3.1573	4.68564	0.0546679	0.00816201	0.182674	0.0766625
chr1	1110449	1110548	358756	0	-	0.464646	(0.44,0.476]	chr1	41375	32	INTRON	INTRON	C1orf159	ENSG00000131591.18	ENST00000379339.5:ENST00000379325.7:ENST00000421241.7:ENST00000467751.5:ENST00000477196.5:ENST00000434641.5:ENST00000482816.5:ENST00000462097.5:ENST00000475119.5:ENST00000472741.5:ENST00000480643.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	100	2	2.31264	3.15728	4.00192	0.00316873	7.32704e-5	0.0503085	0.00714177
chr11	9253189	9253288	4908952	0	-	0.363636	(0.35,0.378]	chr11	460115	78	INTRON	INTRON	DENND5A	ENSG00000184014.9	ENST00000328194.8:ENST00000681203.1:ENST00000530780.2:ENST00000679999.1:ENST00000680470.1:ENST00000680554.1:ENST00000681425.1:ENST00000679568.1:ENST00000679446.1:ENST00000680294.1:ENST00000680742.1:ENST00000680885.1:ENST00000530044.5:ENST00000526707.5:ENST00000532696.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	58	2	1.26902	3.15707	5.04512	0.0635011	0.00393262	0.19815	0.0548259
chr16	12772091	12772191	6447542	0	-	0.37	(0.35,0.378]	chr16	621153	667	INTRON	INTRON	CPPED1	ENSG00000103381.12	ENST00000381774.9:ENST00000433677.6:ENST00000261660.4	protein_coding	protein_coding	protein_coding	protein_coding	2	38	2	1.81767	3.156965	4.49626	0.0640429	0.00917582	0.177882	0.0855292
chr18	35586450	35586549	6890063	0	+	0.373737	(0.35,0.378]	chr18	682832	42	INTRON	INTRON	GALNT1	ENSG00000141429.14	ENST00000586725.1:ENST00000269195.6:ENST00000591924.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	38	2	1.81767	3.156965	4.49626	0.0640429	0.00917582	0.177882	0.0855292
chr1	21723302	21723397	396250	0	-	0.515789	(0.515,0.57]	chr1	47269	12	INTRON	INTRON	USP48	ENSG00000090686.16	ENST00000400301.5:ENST00000308271.14:ENST00000374732.7:ENST00000529637.5:ENST00000487880.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	47	2	3.05839	3.15693	3.25547	0.00485936	0.00261721	0.0640618	0.0455413
chr2	39067938	39068030	1101806	0	-	0.521739	(0.515,0.57]	chr2	118301	3	EXON_LNCRNA	EXON_LNCRNA:SS3_PROX:INTRON	SOS1	ENSG00000115904.15	ENST00000692089.1:ENST00000402219.8:ENST00000690876.1:ENST00000395038.6:ENST00000691229.1:ENST00000689668.1:ENST00000690679.1:ENST00000461545.2:ENST00000685782.1:ENST00000451331.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	47	2	3.05839	3.15693	3.25547	0.00485936	0.00261721	0.0640618	0.0455413
chr17	48842847	48842939	6624066	0	+	0.402174	(0.378,0.408]	chr17	646432	3	INTRON	INTRON	CALCOCO2	ENSG00000136436.15	ENST00000503463.5:ENST00000509507.5:ENST00000448105.6:ENST00000258947.8:ENST00000508679.5:ENST00000416445.6:ENST00000513119.5:ENST00000509415.5:ENST00000570513.5:ENST00000575560.5:ENST00000576582.5:ENST00000505071.5:ENST00000507076.1:ENST00000502761.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	91	2	2.95379	3.156885	3.35998	0.00230615	2.62263e-4	0.0428247	0.0143317
chr21	21280752	21280852	7381819	0	+	0.44	(0.408,0.44]	chr21	752612	1	SS5_PROX	SS5_PROX:INTRON	NCAM2	ENSG00000154654.15	ENST00000400546.6:ENST00000486367.1:ENST00000284894.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	55	2	3.02513	3.156825	3.28852	0.0059965	0.00287185	0.0700606	0.0474836
chr1	32390885	32390985	415160	0	-	0.45	(0.44,0.476]	chr1	50088	36	INTRON	INTRON	BSDC1	ENSG00000160058.19	ENST00000455895.7:ENST00000444377.5:ENST00000341071.11:ENST00000526031.5:ENST00000419121.6:ENST00000446293.6:ENST00000373520.8:ENST00000527513.5:ENST00000527163.5:ENST00000530485.1:ENST00000474414.5:ENST00000530876.5:ENST00000530753.1:ENST00000533084.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	98	2	2.50256	3.156785	3.81101	0.00102082	3.0729e-4	0.0294041	0.0161362
chr7	151095533	151095633	3448442	0	+	0.6	(0.57,1]	chr7	322165	46	INTRON	INTRON	AGAP3	ENSG00000133612.19	ENST00000490097.5:ENST00000463381.5:ENST00000397238.7:ENST00000622464.4:ENST00000479901.5:ENST00000473312.5:ENST00000469901.5:ENST00000476375.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	83	2	3.05103	3.15678	3.26253	2.42319e-5	2.16321e-5	0.00404178	0.00361845
chr1	32792636	32792735	415912	0	-	0.50505	(0.476,0.515]	chr1	50188	10	INTRON	INTRON	YARS1	ENSG00000134684.13	ENST00000373477.9:ENST00000676297.1:ENST00000674654.1:ENST00000674629.1:ENST00000675785.2:ENST00000481895.6:ENST00000616261.2:ENST00000466052.1:ENST00000470377.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	47	2	1.78315	3.15669	4.53023	0.0215899	0.0119748	0.123836	0.0899583
chr18	671751	671851	6855578	0	+	0.45	(0.44,0.476]	chr18	679620	3	SS5_PROX	SS5_PROX:INTRON	TYMS	ENSG00000176890.16	ENST00000323274.15:ENST00000323224.7:ENST00000323250.9:ENST00000581920.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	181	2	2.61256	3.1566850000000004	3.70081	2.78737e-4	5.3674e-6	0.0148795	0.00172277
chr1	109215846	109215945	179611	0	+	0.474747	(0.44,0.476]	chr1	19612	8	INTRON	INTRON	SARS1	ENSG00000031698.13	ENST00000234677.7:ENST00000477544.5:ENST00000369923.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	17	349	2	3.04554	3.15667	3.2678	9.51077e-6	6.64078e-7	0.00236695	4.49797e-4
chr21	43800981	43801081	7413737	0	+	0.55	(0.515,0.57]	chr21	755658	1	SS5_PROX	SS5_PROX:INTRON	RRP1	ENSG00000160214.13	ENST00000497547.2:ENST00000467112.5:ENST00000471909.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	62	2	2.73258	3.1566099999999997	3.58064	0.00260192	6.54693e-4	0.0470772	0.0233335
chr8	67211282	67211382	3962459	0	-	0.44	(0.408,0.44]	chr8	363564	4	SS5_PROX	SS5_PROX:INTRON	ARFGEF1	ENSG00000066777.9	ENST00000520381.5:ENST00000518789.5:ENST00000262215.8:ENST00000518230.5	protein_coding	protein_coding	protein_coding	protein_coding	6	134	2	2.70492	3.1566	3.60828	5.24714e-4	3.18952e-5	0.0210958	0.00450719
chr10	124931063	124931163	4535400	0	+	0.4	(0.378,0.408]	chr10	418562	134	INTRON	INTRON	ENSG00000249456	ENSG00000249456.1	ENST00000508096.1	lncRNA	lncRNA	lncRNA	lncRNA	2	57	2	2.66785	3.1565700000000003	3.64529	0.0224639	4.71767e-4	0.11692	0.0196294
chr7	131344771	131344870	3416611	0	+	0.414141	(0.408,0.44]	chr7	319187	164	INTRON	INTRON	MKLN1	ENSG00000128585.18	ENST00000421797.6:ENST00000416992.6:ENST00000429546.5:ENST00000446815.5:ENST00000494286.5:ENST00000352689.11:ENST00000494785.5:ENST00000458153.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	72	2	2.82511	3.15652	3.48793	0.00189528	0.00130904	0.0402736	0.0331539
chr20	38040234	38040334	7268940	0	+	0.33	(0.32,0.35]	chr20	738674	4	SS3_PROX	SS3_PROX:INTRON	RPRD1B	ENSG00000101413.12	ENST00000462548.6:ENST00000373433.9:ENST00000495457.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	62	2	2.89743	3.156485	3.41554	0.0127608	0.00153152	0.0926667	0.0361484
chr5	131783626	131783726	2720611	0	-	0.35	(0.32,0.35]	chr5	255730	386	INTRON	INTRON	FNIP1	ENSG00000217128.13	ENST00000510461.6:ENST00000307954.12:ENST00000307968.11:ENST00000511848.1	protein_coding	protein_coding	protein_coding	protein_coding	2	62	2	2.89743	3.156485	3.41554	0.0127608	0.00153152	0.0926667	0.0361484
chr10	74058600	74058700	4455108	0	+	0.34	(0.32,0.35]	chr10	411397	151	INTRON	INTRON	VCL	ENSG00000035403.18	ENST00000623461.3:ENST00000372755.7:ENST00000624354.3:ENST00000211998.10:ENST00000478896.2:ENST00000461383.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	62	2	3.07935	3.1563299999999996	3.23331	0.00724137	0.00315414	0.0729826	0.0515261
chr11	35762211	35762311	4771066	0	+	0.35	(0.32,0.35]	chr11	441389	264	INTRON	INTRON	TRIM44	ENSG00000166326.7	ENST00000299413.7:ENST00000532066.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	100	2	2.7634	3.1563299999999996	3.54926	0.00133843	8.19858e-4	0.0335491	0.026165
chr14	101869549	101869649	5819591	0	+	0.33	(0.32,0.35]	chr14	551879	123	INTRON	INTRON	PPP2R5C	ENSG00000078304.20	ENST00000694906.1:ENST00000422945.6:ENST00000328724.9:ENST00000350249.7:ENST00000557621.5:ENST00000556307.5:ENST00000553730.5:ENST00000334743.9:ENST00000445439.7:ENST00000557095.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	62	2	3.07935	3.1563299999999996	3.23331	0.00724137	0.00315414	0.0729826	0.0515261
chr20	62945010	62945109	7299588	0	+	0.414141	(0.408,0.44]	chr20	742734	2	UTR3	UTR3:EXON_MRNA	GID8	ENSG00000101193.8	ENST00000266069.5	protein_coding	protein_coding	protein_coding	protein_coding	6	110	2	2.17577	3.15632	4.13687	0.00269594	6.40544e-5	0.0479115	0.00711194
chr15	63551217	63551317	6042382	0	+	0.37	(0.35,0.378]	chr15	575406	61	INTRON	INTRON	USP3	ENSG00000140455.17	ENST00000540797.5:ENST00000380324.8:ENST00000561442.5:ENST00000560070.5:ENST00000557884.5:ENST00000558157.5:ENST00000561326.5:ENST00000559873.5:ENST00000559192.5:ENST00000559771.5:ENST00000268049.11:ENST00000558285.5:ENST00000559257.5:ENST00000538686.6:ENST00000559711.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	141	2	2.29213	3.1562849999999996	4.02044	6.83971e-4	1.4631e-4	0.0238173	0.011065
chr1	246190502	246190601	677539	0	-	0.464646	(0.44,0.476]	chr1	79729	15	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000391836.3:ENST00000453676.5:ENST00000462422.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	72	2	2.63508	3.1562349999999997	3.67739	0.00501007	3.8961e-4	0.0618077	0.0177751
chr8	111039808	111039908	4027600	0	-	0.39	(0.378,0.408]	chr8	367870	3	SS5_PROX	SS5_PROX:INTRON	LINC01608	ENSG00000253877.6	ENST00000669893.1	lncRNA	lncRNA	lncRNA	lncRNA	4	89	2	2.66822	3.156205	3.64419	0.00112898	7.25777e-4	0.0308465	0.0247646
chr16	11902325	11902425	6446274	0	-	0.45	(0.44,0.476]	chr16	621128	39	INTRON	INTRON	GSPT1	ENSG00000103342.13	ENST00000434724.7:ENST00000439887.6:ENST00000420576.6:ENST00000568849.5:ENST00000562169.1	protein_coding	protein_coding	protein_coding	protein_coding	7	147	2	2.30689	3.156165	4.00544	0.00187835	2.50527e-6	0.039073	0.00100592
chr7	128534429	128534529	3407388	0	+	0.4	(0.378,0.408]	chr7	318333	3	INTRON	INTRON	ENSG00000280828	ENSG00000280828.1	ENST00000479267.2	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	12	262	2	2.92277	3.15609	3.38941	1.33584e-5	7.83237e-6	0.00288846	0.00201054
chr17	76642920	76643007	6843666	0	-	0.310345	(0.28,0.32]	chr17	676993	7	INTRON	INTRON	ST6GALNAC1	ENSG00000070526.15	ENST00000592042.5:ENST00000156626.12:ENST00000359088.9:ENST00000590878.1:ENST00000589813.5:ENST00000590915.1:ENST00000589992.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	124	2	2.47916	3.155995	3.83283	0.0015115	5.10252e-4	0.0360297	0.020816
chr10	69187335	69187432	4445139	0	+	0.42268	(0.408,0.44]	chr10	410091	3	SS3_PROX	SS3_PROX:INTRON	SUPV3L1	ENSG00000156502.14	ENST00000359655.9:ENST00000471069.5:ENST00000483572.5:ENST00000422378.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	90	2	1.96534	3.15598	4.34662	0.0216499	9.84598e-6	0.11491	0.00227957
chr16	14633583	14633683	6303385	0	+	0.42	(0.408,0.44]	chr16	602794	1	SS5_PROX	SS5_PROX:INTRON	BFAR	ENSG00000103429.11	ENST00000563971.5:ENST00000566520.5:ENST00000562442.5:ENST00000562121.1:ENST00000261658.7:ENST00000563313.5:ENST00000570219.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	44	2	1.69172	3.155905	4.62009	0.0486032	0.00504155	0.153946	0.0646039
chr13	95230320	95230420	5639161	0	-	0.31	(0.28,0.32]	chr13	537151	192	INTRON	INTRON	ABCC4	ENSG00000125257.16	ENST00000645237.2:ENST00000643051.1:ENST00000643842.1:ENST00000646439.1:ENST00000643816.1:ENST00000536256.3:ENST00000643556.1:ENST00000629385.1:ENST00000642524.1:ENST00000645532.1:ENST00000644471.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	68	2	2.73077	3.155885	3.581	0.0220748	8.63544e-4	0.115395	0.0266494
chr7	30601509	30601604	3301500	0	+	0.284211	(0.28,0.32]	chr7	306537	4	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	GARS1	ENSG00000106105.15	ENST00000675051.1:ENST00000470392.2:ENST00000674643.1:ENST00000675529.1:ENST00000674807.1:ENST00000675810.1:ENST00000676088.1:ENST00000674815.1:ENST00000676403.1:ENST00000485784.2:ENST00000676210.1:ENST00000478124.6:ENST00000454308.6:ENST00000389266.8:ENST00000675693.1:ENST00000676259.1:ENST00000675651.1:ENST00000674616.1:ENST00000674737.1:ENST00000675859.1:ENST00000676140.1:ENST00000674969.1:ENST00000676164.1:ENST00000675886.1:ENST00000444666.6:ENST00000675587.1:ENST00000674851.1:ENST00000675863.1:ENST00000675025.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	55	2	1.72287	3.15581	4.58875	0.0286502	0.0230574	0.139456	0.118056
chrX	73992639	73992739	7682585	0	+	0.36	(0.35,0.378]	chrX	786644	77	INTRON	INTRON	JPX	ENSG00000225470.8	ENST00000664637.1:ENST00000639185.1:ENST00000655090.1:ENST00000640437.1:ENST00000660546.1:ENST00000667886.1:ENST00000660840.1:ENST00000657179.1:ENST00000670506.1:ENST00000657910.1:ENST00000662120.1:ENST00000671207.1:ENST00000659254.1:ENST00000656624.1:ENST00000667573.1:ENST00000660856.1:ENST00000660836.1:ENST00000668590.1:ENST00000658649.1:ENST00000414209.6:ENST00000654137.1:ENST00000670994.1:ENST00000602772.5:ENST00000655879.1:ENST00000657372.1:ENST00000657096.1:ENST00000602985.6:ENST00000670685.1:ENST00000670503.1:ENST00000663027.1:ENST00000654995.1:ENST00000602895.6:ENST00000654374.1:ENST00000660087.1:ENST00000665032.1:ENST00000671336.1:ENST00000671476.1:ENST00000667057.1:ENST00000670192.1:ENST00000670464.1:ENST00000665345.1:ENST00000661546.1:ENST00000662543.1:ENST00000602938.6:ENST00000664295.1:ENST00000654005.1:ENST00000669149.1:ENST00000659852.1:ENST00000656509.1:ENST00000602294.6:ENST00000667294.1:ENST00000663470.1:ENST00000602920.6:ENST00000671021.1:ENST00000659849.1:ENST00000667937.1:ENST00000661130.1:ENST00000654196.1:ENST00000655994.1:ENST00000659373.1:ENST00000662239.1:ENST00000670805.1:ENST00000656263.1:ENST00000653069.1:ENST00000657638.1:ENST00000653808.1:ENST00000653929.1:ENST00000653885.1:ENST00000659023.1:ENST00000602546.5:ENST00000659622.1:ENST00000671518.1:ENST00000670408.1	lncRNA	lncRNA	lncRNA	lncRNA	3	46	2	1.56287	3.155735	4.7486	0.0697648	0.00418965	0.184298	0.0591344
chr6	20419826	20419926	2827627	0	+	0.47	(0.44,0.476]	chr6	265575	156	INTRON	INTRON	E2F3	ENSG00000112242.16	ENST00000346618.8:ENST00000535432.2	protein_coding	protein_coding	protein_coding	protein_coding	4	96	2	3.09039	3.155685	3.22098	7.4601e-4	2.82213e-4	0.0251072	0.0149966
chr14	76324900	76325000	5797248	0	+	0.34	(0.32,0.35]	chr14	549230	136	INTRON	INTRON	ESRRB	ENSG00000119715.15	ENST00000512784.6	protein_coding	protein_coding	protein_coding	protein_coding	2	37	2	2.13945	3.15563	4.17181	0.04531	0.0254517	0.149888	0.133676
chr2	39435891	39435991	1104287	0	-	0.35	(0.32,0.35]	chr2	118511	562	INTRON	INTRON	MAP4K3	ENSG00000011566.15	ENST00000263881.8:ENST00000341681.9:ENST00000429397.5:ENST00000437968.1:ENST00000484274.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	37	2	2.13945	3.15563	4.17181	0.04531	0.0254517	0.149888	0.133676
chr3	47772416	47772516	1684982	0	-	0.31	(0.28,0.32]	chr3	172117	2	SS5_PROX	SS5_PROX:INTRON	SMARCC1	ENSG00000173473.11	ENST00000254480.10:ENST00000425518.5:ENST00000454240.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	66	2	1.38178	3.155535	4.92929	0.047484	0.0098607	0.169527	0.0838128
chr1	31287757	31287857	413200	0	-	0.55	(0.515,0.57]	chr1	49797	54	INTRON	INTRON	SNRNP40	ENSG00000060688.13	ENST00000263694.9:ENST00000474025.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	166	2	2.16157	3.1555150000000003	4.14946	5.46454e-4	1.08597e-6	0.0212751	6.44731e-4
chr3	87832919	87833019	1455414	0	+	0.39	(0.378,0.408]	chr3	153149	104	INTRON	INTRON	HTR1F	ENSG00000179097.7	ENST00000319595.7	protein_coding	protein_coding	protein_coding	protein_coding	2	37	2	1.88729	3.15539	4.42349	0.0532327	0.00992961	0.162538	0.0877296
chr1	36017938	36018037	72031	0	+	0.414141	(0.408,0.44]	chr1	9206	35	INTRON	INTRON	AGO3	ENSG00000126070.20	ENST00000634486.1:ENST00000373191.9:ENST00000246314.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	54	2	3.10641	3.1553899999999997	3.20437	0.00555646	0.00306596	0.0648867	0.0509893
chr6	10750144	10750244	2810695	0	+	0.41	(0.408,0.44]	chr6	264475	1	SS5_PROX	SS5_PROX:INTRON	TMEM14B	ENSG00000137210.14	ENST00000463448.5:ENST00000473166.5:ENST00000612333.4:ENST00000460341.5:ENST00000491103.5:ENST00000480194.5:ENST00000473807.5:ENST00000379542.10:ENST00000475942.5:ENST00000461342.5:ENST00000463100.5:ENST00000379530.7:ENST00000473276.5:ENST00000467317.5:ENST00000481240.5:ENST00000478732.1:ENST00000486421.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	54	2	3.10641	3.1553899999999997	3.20437	0.00555646	0.00306596	0.0648867	0.0509893
chr22	47696462	47696561	7540010	0	+	0.272727	[0,0.28]	chr22	770705	51	INTRON	INTRON	ENSG00000224271	ENSG00000224271.7	ENST00000664761.1:ENST00000651071.1:ENST00000650683.1:ENST00000651536.1:ENST00000652499.1:ENST00000652656.1:ENST00000652072.1:ENST00000651445.1:ENST00000423737.5:ENST00000650834.1:ENST00000650660.1:ENST00000651056.1:ENST00000652611.1:ENST00000652399.1:ENST00000652123.1:ENST00000651311.1:ENST00000651458.1:ENST00000652505.1:ENST00000652702.2:ENST00000652334.1:ENST00000652030.2:ENST00000651403.1:ENST00000652228.1:ENST00000651124.1:ENST00000650972.1:ENST00000651985.1:ENST00000651754.1:ENST00000651637.1:ENST00000650924.1:ENST00000651003.1:ENST00000652168.1:ENST00000651948.2:ENST00000651293.1:ENST00000651939.1:ENST00000650787.1:ENST00000651517.1:ENST00000651662.1:ENST00000652690.1:ENST00000651638.1:ENST00000670853.1:ENST00000652750.1:ENST00000652080.1:ENST00000651294.1:ENST00000652164.1:ENST00000651538.1:ENST00000650775.1:ENST00000651983.1:ENST00000651033.1:ENST00000651584.1	lncRNA	lncRNA	lncRNA	lncRNA	2	76	2	3.04867	3.155385	3.2621000000000002	0.0104221	0.00367113	0.085482	0.056059199999999997
chr15	89623024	89623122	6097593	0	+	0.377551	(0.35,0.378]	chr15	580375	11	INTRON	INTRON	TICRR	ENSG00000140534.14	ENST00000268138.12:ENST00000560985.5	protein_coding	protein_coding	protein_coding	protein_coding	2	34	2	1.82887	3.155355	4.48184	0.0584878	0.0191702	0.189395	0.108861
chr16	53124462	53124562	6351415	0	+	0.37	(0.35,0.378]	chr16	609674	24	INTRON	INTRON	CHD9	ENSG00000177200.18	ENST00000447540.6:ENST00000566029.5:ENST00000615216.4:ENST00000565832.5	protein_coding	protein_coding	protein_coding	protein_coding	2	34	2	1.82887	3.155355	4.48184	0.0584878	0.0191702	0.189395	0.108861
chr20	56404800	56404898	7287433	0	+	0.367347	(0.35,0.378]	chr20	741418	12	UTR3	UTR3:EXON_MRNA	CSTF1	ENSG00000101138.12	ENST00000217109.9	protein_coding	protein_coding	protein_coding	protein_coding	2	34	2	1.82887	3.155355	4.48184	0.0584878	0.0191702	0.189395	0.108861
chr3	172807269	172807369	1563802	0	+	0.36	(0.35,0.378]	chr3	161824	1	SS3_PROX	SS3_PROX:INTRON	ECT2	ENSG00000114346.14	ENST00000232458.9:ENST00000540509.5:ENST00000392692.8:ENST00000417960.5:ENST00000441497.6:ENST00000437296.1	protein_coding	protein_coding	protein_coding	protein_coding	2	61	2	2.53856	3.15527	3.77198	0.0326077	2.78147e-4	0.133687	0.0148626
chr17	38727196	38727296	6606188	0	+	0.3	(0.28,0.32]	chr17	643126	17	UTR3	UTR3:EXON_MRNA	MLLT6	ENSG00000275023.5	ENST00000621332.5	protein_coding	protein_coding	protein_coding	protein_coding	4	111	2	2.50071	3.155265	3.80982	0.00418869	3.09593e-4	0.0572071	0.0157609
chr15	87605887	87605987	6255613	0	-	0.34	(0.32,0.35]	chr15	596826	625	INTRON	INTRON	ENSG00000259560	ENSG00000259560.2	ENST00000665121.1:ENST00000560439.1	lncRNA	lncRNA	lncRNA	lncRNA	3	43	2	1.61669	3.1552450000000003	4.6938	0.0578816	0.0137794	0.188651	0.0949306
chr8	31036772	31036872	3727961	0	+	0.33	(0.32,0.35]	chr8	346522	24	INTRON	INTRON	WRN	ENSG00000165392.11	ENST00000650667.1:ENST00000298139.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	43	2	1.61669	3.1552450000000003	4.6938	0.0578816	0.0137794	0.188651	0.0949306
chr9	92252557	92252653	4286908	0	-	0.520833	(0.515,0.57]	chr9	394148	8	EXON_MRNA	EXON_MRNA:INTRON	IARS1	ENSG00000196305.19	ENST00000375643.7:ENST00000443024.7:ENST00000447699.7:ENST00000683537.1:ENST00000684726.1:ENST00000683192.1:ENST00000683565.1:ENST00000682756.1:ENST00000684542.1:ENST00000683793.1:ENST00000683817.1:ENST00000682141.1:ENST00000682893.1:ENST00000684557.1:ENST00000498025.2:ENST00000682156.1:ENST00000683017.1:ENST00000682521.1:ENST00000627121.3:ENST00000683469.1:ENST00000683495.1:ENST00000682578.1:ENST00000682533.1:ENST00000472894.2:ENST00000684757.1:ENST00000684445.1:ENST00000683376.1:ENST00000683679.1:ENST00000683119.1:ENST00000684594.1:ENST00000684267.1:ENST00000684328.1:ENST00000467876.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	22	400	2	2.64976	3.15519	3.66062	1.21237e-5	5.58984e-9	0.00276945	2.47293e-5
chr6	12022011	12022111	2814323	0	+	0.33	(0.32,0.35]	chr6	264794	12	INTRON	INTRON	HIVEP1	ENSG00000095951.17	ENST00000491710.5:ENST00000487103.5:ENST00000379388.7:ENST00000627968.2:ENST00000541134.5:ENST00000442081.6:ENST00000478545.1:ENST00000484210.1	protein_coding	protein_coding	protein_coding	protein_coding	3	83	2	2.99495	3.15514	3.31533	0.00323121	0.00102621	0.0507087	0.0294094
chr1	147971753	147971853	213234	0	+	0.43	(0.408,0.44]	chr1	23682	14	INTRON	INTRON	GPR89B	ENSG00000188092.15	ENST00000478307.5:ENST00000488165.5:ENST00000314163.12:ENST00000491975.5:ENST00000461786.5:ENST00000488603.5:ENST00000490955.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	33	2	2.07919	3.155075	4.23096	0.0291499	0.0278028	0.14147	0.123904
chr12	121903805	121903904	5238334	0	+	0.424242	(0.408,0.44]	chr12	497289	3	INTRON	INTRON	PSMD9	ENSG00000110801.14	ENST00000537407.5:ENST00000540962.5:ENST00000261817.6:ENST00000542602.1:ENST00000541212.6:ENST00000543699.5:ENST00000535293.5:ENST00000544724.5:ENST00000544254.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	33	2	2.07919	3.155075	4.23096	0.0291499	0.0278028	0.14147	0.123904
chr13	20021708	20021808	5453066	0	+	0.44	(0.408,0.44]	chr13	522478	17	INTRON	INTRON	ZMYM2	ENSG00000121741.17	ENST00000382874.6:ENST00000610343.5:ENST00000382871.3	protein_coding	protein_coding	protein_coding	protein_coding	2	33	2	2.07919	3.155075	4.23096	0.0291499	0.0278028	0.14147	0.123904
chr14	22578513	22578613	5839974	0	-	0.42	(0.408,0.44]	chr14	555009	29	INTRON	INTRON	DAD1	ENSG00000129562.11	ENST00000250498.9:ENST00000535847.1:ENST00000538631.1:ENST00000543337.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	33	2	2.07919	3.155075	4.23096	0.0291499	0.0278028	0.14147	0.123904
chr20	32394819	32394919	7256191	0	+	0.49	(0.476,0.515]	chr20	737076	224	INTRON	INTRON	ASXL1	ENSG00000171456.21	ENST00000651418.1:ENST00000375687.10:ENST00000613218.4:ENST00000644587.1:ENST00000620121.4:ENST00000646985.1:ENST00000643168.1:ENST00000306058.9:ENST00000645688.1:ENST00000470145.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	33	2	2.06491	3.15496	4.24501	0.0304733	0.0247713	0.143385	0.12011
chr20	62128201	62128299	7297403	0	+	0.479592	(0.476,0.515]	chr20	742208	1	INTRON	INTRON	LSM14B	ENSG00000149657.20	ENST00000279068.11:ENST00000400318.6:ENST00000279069.11:ENST00000361670.3	protein_coding	protein_coding	protein_coding	protein_coding	2	33	2	2.06491	3.15496	4.24501	0.0304733	0.0247713	0.143385	0.12011
chr6	41851877	41851977	3093551	0	-	0.48	(0.476,0.515]	chr6	289400	445	INTRON	INTRON	USP49	ENSG00000164663.15	ENST00000682992.1:ENST00000394253.7:ENST00000373010.5:ENST00000373006.5:ENST00000423567.1	protein_coding	protein_coding	protein_coding	protein_coding	2	33	2	2.06491	3.15496	4.24501	0.0304733	0.0247713	0.143385	0.12011
chr5	134389765	134389865	2488765	0	+	0.56	(0.515,0.57]	chr5	237613	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	UBE2B	ENSG00000119048.9	ENST00000507277.2:ENST00000510021.5:ENST00000511807.1:ENST00000265339.7:ENST00000506787.5:ENST00000499038.2:ENST00000503080.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	54	2	2.23915	3.154915	4.07068	0.0596178	3.78716e-5	0.16883600000000001	0.00493296
chr16	81503392	81503492	6405585	0	+	0.48	(0.476,0.515]	chr16	615031	75	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6	protein_coding	protein_coding	protein_coding	protein_coding	7	161	2	3.13935	3.15483	3.17031	7.50511e-5	4.57431e-5	0.007252	0.005846
chr10	5000009	5000109	4543622	0	-	0.38	(0.378,0.408]	chr10	419583	2	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	AKR1C2	ENSG00000151632.18	ENST00000380753.9:ENST00000421196.7:ENST00000460124.5:ENST00000604507.5:ENST00000455190.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	43	2	2.09402	3.1548249999999998	4.21563	0.0315429	0.0126438	0.13151	0.0982897
chr11	62714606	62714704	4960859	0	-	0.571429	(0.57,1]	chr11	466762	21	UTR3	UTR3:EXON_MRNA:INTRON	HNRNPUL2-BSCL2:HNRNPUL2	ENSG00000234857.2:ENSG00000214753.4	ENST00000403734.2:ENST00000301785.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	61	2	3.09993	3.15455	3.20917	2.02775e-4	6.63721e-5	0.0129814	0.00675077
chr7	151213657	151213756	3674216	0	-	0.606061	(0.57,1]	chr7	341087	23	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	ABCF2-H2BE1:ABCF2	ENSG00000285292.1:ENSG00000033050.9	ENST00000222388.6:ENST00000287844.7	protein_coding	protein_coding	protein_coding	protein_coding	4	47	2	2.60916	3.15451	3.69986	0.00119055	1.9698e-4	0.0315806	0.0122531
chr9	2042589	2042687	4091281	0	+	0.397959	(0.378,0.408]	chr9	372770	13	UTR3	UTR3:EXON_MRNA:INTRON	SMARCA2	ENSG00000080503.24	ENST00000357248.8:ENST00000450198.6:ENST00000637103.1:ENST00000349721.8:ENST00000636559.1:ENST00000636903.1:ENST00000382194.6:ENST00000634760.1:ENST00000637806.1:ENST00000382203.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	91	2	2.51043	3.1544999999999996	3.79857	0.00304007	2.23525e-4	0.0493883	0.0131533
chr16	24215508	24215607	6327582	0	+	0.444444	(0.44,0.476]	chr16	605811	8	UTR3	UTR3:EXON_MRNA:INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1	protein_coding	protein_coding	protein_coding	protein_coding	4	46	2	1.70242	3.154445	4.60647	0.0282713	0.0102339	0.137721	0.0850389
chr9	124738245	124738345	4348885	0	-	0.37	(0.35,0.378]	chr9	399261	45	INTRON	INTRON	NR6A1	ENSG00000148200.17	ENST00000487099.7:ENST00000373584.7:ENST00000416460.6:ENST00000344523.8	protein_coding	protein_coding	protein_coding	protein_coding	3	78	2	2.76192	3.1543799999999997	3.54684	0.00265021	0.00119142	0.0474328	0.0315806
chr10	13630513	13630599	4396316	0	+	0.267442	[0,0.28]	chr10	405786	3	UTR3	UTR3:EXON_MRNA	PRPF18	ENSG00000165630.14	ENST00000378572.8	protein_coding	protein_coding	protein_coding	protein_coding	2	41	2	1.84147	3.154365	4.46726	0.0610416	0.0427997	0.193277	0.148082
chr14	30671185	30671282	5675541	0	+	0.278351	[0,0.28]	chr14	540699	4	INTRON	INTRON	SCFD1	ENSG00000092108.22	ENST00000678760.1:ENST00000677690.1:ENST00000678124.1:ENST00000678716.1:ENST00000678402.1:ENST00000679153.1:ENST00000678516.1:ENST00000678802.1:ENST00000679096.1:ENST00000679102.1:ENST00000678475.1:ENST00000676509.1:ENST00000676750.1:ENST00000679165.1:ENST00000676658.1:ENST00000678399.1:ENST00000678185.1:ENST00000677027.1:ENST00000678006.1:ENST00000677413.1:ENST00000555259.5:ENST00000554437.6:ENST00000676834.1:ENST00000678858.1:ENST00000553693.6:ENST00000676914.1:ENST00000676465.1:ENST00000676812.1:ENST00000678669.1:ENST00000676520.1:ENST00000676876.1:ENST00000677617.1:ENST00000676954.1:ENST00000677456.1:ENST00000678735.1:ENST00000679342.1:ENST00000678637.1:ENST00000677176.1:ENST00000557076.6:ENST00000677637.1:ENST00000677974.1:ENST00000458591.7:ENST00000484733.6:ENST00000556768.5:ENST00000544052.6:ENST00000463622.6:ENST00000676674.1:ENST00000677340.1:ENST00000311943.11:ENST00000679075.1:ENST00000678396.1:ENST00000676473.1:ENST00000396629.6:ENST00000678579.1:ENST00000678104.1:ENST00000554819.5:ENST00000553278.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	41	2	1.84147	3.154365	4.46726	0.0610416	0.0427997	0.193277	0.148082
chr4	78902938	78903038	1982674	0	+	0.23	[0,0.28]	chr4	198560	39	INTRON	INTRON	BMP2K	ENSG00000138756.19	ENST00000502613.3	protein_coding	protein_coding	protein_coding	protein_coding	2	41	2	1.84147	3.154365	4.46726	0.0610416	0.0427997	0.193277	0.148082
chr21	9085388	9085487	7426192	0	-	0.373737	(0.35,0.378]	chr21	757573	24	INTRON	INTRON	TEKT4P2	ENSG00000188681.12	ENST00000690061.1:ENST00000689141.1:ENST00000688310.1:ENST00000687537.1:ENST00000690096.1:ENST00000687888.1:ENST00000690389.1:ENST00000684989.1:ENST00000416067.6:ENST00000693307.1:ENST00000692383.1:ENST00000685666.1:ENST00000688451.1:ENST00000691190.1:ENST00000685532.1:ENST00000687488.1:ENST00000690713.1:ENST00000691834.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	5	109	2	2.15229	3.1543099999999997	4.15633	0.00545124	7.52029e-5	0.0669407	0.00777227
chr6	4827598	4827698	2791374	0	+	0.33	(0.32,0.35]	chr6	263598	504	INTRON	INTRON	CDYL	ENSG00000153046.18	ENST00000328908.9:ENST00000491864.1:ENST00000440139.5:ENST00000483019.1:ENST00000397588.8:ENST00000472453.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	209	2	2.84742	3.154055	3.46069	1.94011e-4	1.79264e-5	0.0127226	0.00323282
chr12	121912183	121912280	5238419	0	+	0.536082	(0.515,0.57]	chr12	497295	8	INTRON	INTRON	PSMD9	ENSG00000110801.14	ENST00000537407.5:ENST00000540962.5:ENST00000261817.6:ENST00000542602.1:ENST00000541212.6:ENST00000543699.5:ENST00000535293.5:ENST00000544724.5:ENST00000544254.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	64	2	2.27238	3.154	4.03562	0.0161808	4.64806e-5	0.101453	0.00555027
chr14	21237059	21237159	5834842	0	-	0.43	(0.408,0.44]	chr14	554459	2	INTRON	INTRON	HNRNPC	ENSG00000092199.19	ENST00000336053.10:ENST00000553300.6:ENST00000554969.5:ENST00000556142.5:ENST00000554455.5:ENST00000430246.6:ENST00000553753.5:ENST00000555309.5:ENST00000555914.5:ENST00000557442.5:ENST00000556628.5:ENST00000556513.5:ENST00000555883.5:ENST00000557201.5:ENST00000556897.5:ENST00000420743.6:ENST00000554539.5:ENST00000554383.5:ENST00000555215.5:ENST00000555137.5:ENST00000554891.5:ENST00000556226.5:ENST00000555176.5:ENST00000553614.5:ENST00000557336.1:ENST00000557768.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	72	2	3.01942	3.15397	3.28852	0.00287185	7.74413e-4	0.0474836	0.0256083
chr19	809262	809359	6992228	0	+	0.412371	(0.408,0.44]	chr19	692271	1	INTRON	INTRON	PTBP1	ENSG00000011304.22	ENST00000635647.1:ENST00000627714.2:ENST00000676227.1:ENST00000677277.1:ENST00000349038.8:ENST00000586944.5:ENST00000356948.11:ENST00000394601.8:ENST00000679114.1:ENST00000350092.8:ENST00000621737.4:ENST00000585932.5:ENST00000585856.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	72	2	3.01942	3.15397	3.28852	0.00287185	7.74413e-4	0.0474836	0.0256083
chr20	34434885	34434985	7259838	0	+	0.27	[0,0.28]	chr20	737460	100	INTRON	INTRON	ITCH	ENSG00000078747.16	ENST00000374864.10:ENST00000535650.7:ENST00000670516.1:ENST00000665484.1:ENST00000664852.1:ENST00000660337.1:ENST00000665428.1:ENST00000262650.10:ENST00000662871.1:ENST00000665346.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	43	2	2.10688	3.15397	4.20106	0.0695895	0.0307985	0.184298	0.143385
chr18	51034108	51034208	6901660	0	+	0.38	(0.378,0.408]	chr18	683840	31	INTRON	INTRON	SMAD4	ENSG00000141646.15	ENST00000588860.5:ENST00000398417.6:ENST00000589076.5:ENST00000342988.8:ENST00000590061.1:ENST00000592911.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	33	2	1.89621	3.15395	4.41169	0.0488044	0.0199606	0.173377	0.109608
chr20	62041905	62042005	7360678	0	-	0.4	(0.378,0.408]	chr20	750714	268	INTRON	INTRON	TAF4	ENSG00000130699.20	ENST00000252996.9:ENST00000608887.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	33	2	1.89621	3.15395	4.41169	0.0488044	0.0199606	0.173377	0.109608
chr5	119119304	119119404	2460253	0	+	0.39	(0.378,0.408]	chr5	235630	3	SS5_PROX	SS5_PROX:INTRON	DMXL1	ENSG00000172869.15	ENST00000539542.6:ENST00000503802.5:ENST00000311085.8:ENST00000514151.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	33	2	1.89621	3.15395	4.41169	0.0488044	0.0199606	0.173377	0.109608
chr4	139118150	139118250	2246753	0	-	0.3	(0.28,0.32]	chr4	219582	2	SS3_PROX	SS3_PROX:INTRON	ELF2	ENSG00000109381.21	ENST00000394235.6:ENST00000686138.1:ENST00000379550.5:ENST00000511184.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	54	2	1.64429	3.15394	4.66359	0.0365539	0.0193496	0.153932	0.108861
chr15	56943883	56943983	6032364	0	+	0.47	(0.44,0.476]	chr15	574663	224	INTRON	INTRON	TCF12	ENSG00000140262.18	ENST00000438423.6:ENST00000267811.9:ENST00000333725.10:ENST00000560190.5:ENST00000559609.5:ENST00000558908.5:ENST00000557843.5:ENST00000557947.5:ENST00000561152.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	54	2	3.08591	3.153915	3.22192	0.00481262	0.00360821	0.0638089	0.0533855
chr16	80979011	80979108	6530408	0	-	0.453608	(0.44,0.476]	chr16	632630	2	INTRON	INTRON	CMC2	ENSG00000103121.9	ENST00000219400.8:ENST00000563779.5:ENST00000566918.5:ENST00000486645.5:ENST00000570195.5:ENST00000566047.5:ENST00000561614.5:ENST00000566231.5:ENST00000569187.5:ENST00000570086.5:ENST00000564249.5:ENST00000565650.5:ENST00000567593.5:ENST00000568228.5:ENST00000565914.5:ENST00000565108.5:ENST00000565925.5:ENST00000564174.5:ENST00000565613.5:ENST00000569666.5:ENST00000562713.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	54	2	3.08591	3.153915	3.22192	0.00481262	0.00360821	0.0638089	0.0533855
chr10	125069614	125069714	4713425	0	-	0.36	(0.35,0.378]	chr10	434897	301	INTRON	INTRON	CTBP2	ENSG00000175029.17	ENST00000337195.9:ENST00000411419.6:ENST00000494626.6:ENST00000531469.5:ENST00000460976.5:ENST00000476817.1:ENST00000530884.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	58	2	2.99044	3.1539	3.31736	0.00894806	0.00211072	0.0799922	0.0425419
chr16	31180227	31180327	6340553	0	+	0.73	(0.57,1]	chr16	608315	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	FUS	ENSG00000089280.19	ENST00000566605.5:ENST00000254108.12:ENST00000380244.7:ENST00000487045.6:ENST00000487509.6:ENST00000568685.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	19	231	2	2.86964	3.153895	3.43815	5.99874e-6	1.8002e-9	0.0017156	8.06428e-6
chr11	31668433	31668532	4762410	0	+	0.313131	(0.28,0.32]	chr11	440407	41	INTRON	INTRON	ELP4	ENSG00000109911.19	ENST00000639878.1:ENST00000379163.10:ENST00000350638.10:ENST00000638347.1:ENST00000640961.2:ENST00000640081.1:ENST00000640342.1:ENST00000640231.1:ENST00000638917.1:ENST00000395934.2:ENST00000640954.1:ENST00000638184.1:ENST00000638984.1:ENST00000640790.1:ENST00000639097.1:ENST00000638828.1:ENST00000639182.1:ENST00000638317.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	91	2	2.65733	3.153745	3.65016	0.0061571	6.39301e-4	0.0676501	0.0228666
chr4	126634185	126634285	2237051	0	-	0.24	[0,0.28]	chr4	219023	1687	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	4	126	2	2.94258	3.153735	3.36489	0.00388509	5.0709e-4	0.0544269	0.0202328
chr4	68336526	68336626	2154746	0	-	0.37	(0.35,0.378]	chr4	212268	1	SS5_PROX	SS5_PROX:INTRON	YTHDC1	ENSG00000083896.13	ENST00000344157.9:ENST00000355665.7:ENST00000579690.5	protein_coding	protein_coding	protein_coding	protein_coding	7	64	2	1.32176	3.1536850000000003	4.98561	0.0452456	0.00474226	0.163924	0.0600445
chrX	66169052	66169146	7672724	0	+	0.468085	(0.44,0.476]	chrX	785250	9	INTRON	INTRON	HEPH	ENSG00000089472.18	ENST00000519389.6:ENST00000683049.1:ENST00000458621.6:ENST00000684042.1:ENST00000343002.7:ENST00000336279.9:ENST00000429547.6:ENST00000441993.7:ENST00000419594.6:ENST00000682362.1:ENST00000425114.2:ENST00000682927.1:ENST00000683420.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	178	2	2.89373	3.15356	3.41339	9.01945e-5	1.64782e-5	0.00844953	0.00306044
chr1	28919570	28919670	59006	0	+	0.53	(0.515,0.57]	chr1	7621	44	INTRON	INTRON	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000647918.1:ENST00000646800.1:ENST00000644342.1:ENST00000646189.1:ENST00000482464.6:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000646260.1:ENST00000373798.5:ENST00000644600.1:ENST00000649674.1:ENST00000643173.1:ENST00000343067.9:ENST00000644780.1:ENST00000650265.1:ENST00000648181.1:ENST00000643604.1:ENST00000648891.1:ENST00000373797.2:ENST00000349460.9:ENST00000645184.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	86	2	2.38208	3.15354	3.925	0.00191752	8.71525e-5	0.0395751	0.00783545
chr10	130176377	130176475	4536738	0	+	0.459184	(0.44,0.476]	chr10	418830	9	INTRON	INTRON	GLRX3	ENSG00000108010.12	ENST00000331244.10:ENST00000481034.1:ENST00000368644.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	40	2	1.87325	3.15351	4.43377	0.0265709	0.0162803	0.134088	0.101453
chr2	26373453	26373541	715289	0	+	0.386364	(0.378,0.408]	chr2	82592	2	CDS	CDS:EXON_MRNA:INTRON	SELENOI	ENSG00000138018.19	ENST00000442141.5:ENST00000260585.12:ENST00000447170.1	protein_coding	protein_coding	protein_coding	protein_coding	9	142	2	2.10762	3.15351	4.1994	0.0012224	5.19961e-5	0.0324596	0.00627105
chr6	35899102	35899202	3088605	0	-	0.47	(0.44,0.476]	chr6	288891	35	INTRON	INTRON	SRPK1	ENSG00000096063.16	ENST00000373825.7:ENST00000423325.6:ENST00000346162.10:ENST00000361690.7:ENST00000510290.5:ENST00000508473.5:ENST00000512445.5:ENST00000513367.1:ENST00000507909.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	40	2	1.87325	3.15351	4.43377	0.0265709	0.0162803	0.134088	0.101453
chr8	23548110	23548210	3715291	0	+	0.36	(0.35,0.378]	chr8	345227	45	INTRON	INTRON	SLC25A37	ENSG00000147454.14	ENST00000519973.6:ENST00000290075.10:ENST00000417331.6:ENST00000518881.5:ENST00000520654.1:ENST00000523930.1:ENST00000523883.5:ENST00000517923.1:ENST00000520949.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	95	2	2.46558	3.15339	3.8412	0.00387127	1.97447e-4	0.0543569	0.0122531
chr12	108728245	108728345	5406753	0	-	0.3	(0.28,0.32]	chr12	516035	253	INTRON	INTRON	CORO1C	ENSG00000110880.11	ENST00000261401.8:ENST00000541050.5:ENST00000549384.5:ENST00000550542.5:ENST00000552871.5:ENST00000551550.5:ENST00000546571.5:ENST00000551044.1:ENST00000551059.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	110	2	2.14942	3.15338	4.15734	0.0143412	5.50456e-5	0.0966737	0.00608953
chr12	124846988	124847088	5446416	0	-	0.52	(0.515,0.57]	chr12	521285	289	INTRON	INTRON	SCARB1	ENSG00000073060.17	ENST00000339570.9:ENST00000261693.11:ENST00000679605.1:ENST00000681686.1:ENST00000680926.1:ENST00000680556.1:ENST00000680982.1:ENST00000680596.1:ENST00000415380.6:ENST00000681117.1:ENST00000538291.5:ENST00000546215.5:ENST00000535005.5:ENST00000539320.3:ENST00000545493.1:ENST00000541661.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	32	2	2.01737	3.15329	4.28921	0.0352218	0.00990051	0.137535	0.0877296
chr5	150517100	150517200	2519996	0	+	0.53	(0.515,0.57]	chr5	241025	85	INTRON	INTRON	NDST1	ENSG00000070614.15	ENST00000522491.1:ENST00000519157.1:ENST00000524161.1:ENST00000523767.5:ENST00000518299.1:ENST00000518346.1:ENST00000261797.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	32	2	2.01737	3.15329	4.28921	0.0352218	0.00990051	0.137535	0.0877296
chr14	96811056	96811156	5810991	0	+	0.5	(0.476,0.515]	chr14	551001	109	INTRON	INTRON	VRK1	ENSG00000100749.9	ENST00000553683.2:ENST00000680538.1:ENST00000555351.2:ENST00000681195.1:ENST00000681524.1:ENST00000680084.1:ENST00000679533.1:ENST00000681598.1:ENST00000679727.1:ENST00000679758.1:ENST00000680509.1:ENST00000557222.6:ENST00000679977.1:ENST00000680387.1:ENST00000680335.1:ENST00000680683.1:ENST00000681474.1:ENST00000216639.8:ENST00000681363.1:ENST00000681538.1:ENST00000679736.1:ENST00000681176.1:ENST00000680922.1:ENST00000679903.1:ENST00000557352.2:ENST00000681101.1:ENST00000681419.1:ENST00000680348.1:ENST00000679941.1:ENST00000679452.1:ENST00000680849.1:ENST00000679770.1:ENST00000681493.1:ENST00000681778.1:ENST00000680993.1:ENST00000681355.1:ENST00000681695.1:ENST00000681344.1:ENST00000680007.1:ENST00000679918.1:ENST00000681785.1:ENST00000679816.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	43	2	1.69138	3.1532850000000003	4.61519	0.0481165	0.00528365	0.153019	0.0656295
chr6	15463351	15463451	2825123	0	+	0.46	(0.44,0.476]	chr6	265210	108	INTRON	INTRON	JARID2	ENSG00000008083.14	ENST00000341776.7:ENST00000397311.4	protein_coding	protein_coding	protein_coding	protein_coding	5	104	2	2.95427	3.15327	3.35227	0.0022005699999999998	8.41842e-5	0.0417893	0.00775456
chr13	28144684	28144784	5460890	0	+	0.38	(0.378,0.408]	chr13	523235	52	INTRON	INTRON	PAN3	ENSG00000152520.14	ENST00000503791.5:ENST00000380958.8:ENST00000399613.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	75	2	2.43657	3.15304	3.86951	0.0106733	1.55755e-4	0.0861859	0.0106835
chr3	121721662	121721762	1799411	0	-	0.37	(0.35,0.378]	chr3	180775	20	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	GOLGB1	ENSG00000173230.17	ENST00000340645.10:ENST00000614479.5:ENST00000393667.8:ENST00000694957.1:ENST00000695107.1:ENST00000482512.6:ENST00000494517.6:ENST00000694982.1:ENST00000695016.1:ENST00000694958.1:ENST00000695018.1:ENST00000695017.1:ENST00000695008.1:ENST00000472475.2:ENST00000489400.2:ENST00000695037.1:ENST00000695040.1:ENST00000695010.1:ENST00000694975.1:ENST00000695011.1:ENST00000695020.1:ENST00000694984.1:ENST00000694985.1:ENST00000695022.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	58	2	3.03814	3.15304	3.26794	0.00767003	0.00257067	0.075364	0.0466761
chr1	19209074	19209174	386831	0	-	0.39	(0.378,0.408]	chr1	46143	69	INTRON	INTRON	UBR4	ENSG00000127481.15	ENST00000375254.8	protein_coding	protein_coding	protein_coding	protein_coding	3	74	2	2.86955	3.1529999999999996	3.43645	0.00171162	0.00159247	0.037419	0.0367961
chr16	9111595	9111694	6285572	0	+	0.414141	(0.408,0.44]	chr16	601929	85	UTR3	UTR3:EXON_MRNA:INTRON	C16orf72	ENSG00000182831.12	ENST00000327827.12:ENST00000574285.2	protein_coding	protein_coding	protein_coding	protein_coding	4	87	2	2.85572	3.152955	3.45019	0.00152664	4.26582e-4	0.0353936	0.0184578
chr19	2202003	2202101	6996560	0	+	0.602041	(0.57,1]	chr19	693467	17	INTRON	INTRON	DOT1L	ENSG00000104885.19	ENST00000398665.8:ENST00000686010.1	protein_coding	protein_coding	protein_coding	protein_coding	3	39	2	2.88261	3.15292	3.42323	0.00118949	8.58388e-4	0.031662	0.0267428
chr1	108943615	108943715	518966	0	-	0.36	(0.35,0.378]	chr1	60895	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CLCC1	ENSG00000121940.17	ENST00000690509.1:ENST00000687328.1:ENST00000685014.1:ENST00000685540.1:ENST00000686576.1:ENST00000688070.1:ENST00000691513.1:ENST00000686821.1:ENST00000692511.1:ENST00000689479.1:ENST00000687646.1:ENST00000687998.1:ENST00000687226.1:ENST00000693336.1:ENST00000689991.1:ENST00000687591.1:ENST00000691777.1:ENST00000690756.1:ENST00000688778.1:ENST00000685104.1:ENST00000689103.1:ENST00000687734.1:ENST00000686434.1:ENST00000685497.1:ENST00000691342.1:ENST00000686776.1:ENST00000692342.1:ENST00000689351.1:ENST00000692584.1:ENST00000692775.1:ENST00000687134.1:ENST00000690707.1:ENST00000687675.1:ENST00000675018.1:ENST00000690781.1:ENST00000691556.1:ENST00000689189.1:ENST00000687099.1:ENST00000685791.1:ENST00000687865.1:ENST00000687449.1:ENST00000688285.1:ENST00000686817.1:ENST00000369968.7:ENST00000674992.1:ENST00000675001.1:ENST00000369969.7:ENST00000356970.6:ENST00000692184.1:ENST00000482889.2:ENST00000369976.6:ENST00000688610.1:ENST00000675128.1:ENST00000693089.1:ENST00000675571.1:ENST00000675650.1:ENST00000369970.8:ENST00000674561.2:ENST00000675451.1:ENST00000675654.1:ENST00000675790.1:ENST00000675584.1:ENST00000692795.1:ENST00000691731.1:ENST00000689359.1:ENST00000676392.2:ENST00000676391.2:ENST00000676454.1:ENST00000674849.1:ENST00000675956.1:ENST00000302500.5:ENST00000675508.1:ENST00000688168.1:ENST00000693673.1:ENST00000692404.1:ENST00000686078.1:ENST00000690874.1:ENST00000692732.1:ENST00000685628.1:ENST00000676306.1:ENST00000348264.6:ENST00000675247.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	35	2	2.10859	3.152845	4.1971	0.0367539	0.0272722	0.138959	0.136494
chr7	133060851	133060951	3645677	0	-	0.41	(0.408,0.44]	chr7	338880	89	INTRON	INTRON	CHCHD3	ENSG00000106554.13	ENST00000262570.10:ENST00000448878.6:ENST00000423635.5:ENST00000481152.2:ENST00000457942.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	162	2	2.36583	3.1528099999999997	3.93979	6.26455e-4	8.65434e-6	0.0225401	0.00226321
chr16	80987250	80987348	6530495	0	-	0.306122	(0.28,0.32]	chr16	632644	33	INTRON	INTRON	CMC2	ENSG00000103121.9	ENST00000219400.8:ENST00000563779.5:ENST00000486645.5:ENST00000570195.5:ENST00000566047.5:ENST00000561614.5:ENST00000566231.5:ENST00000569187.5:ENST00000570086.5:ENST00000564249.5:ENST00000565650.5:ENST00000567593.5:ENST00000568228.5:ENST00000565914.5:ENST00000565108.5:ENST00000565925.5:ENST00000564174.5:ENST00000565613.5:ENST00000569666.5:ENST00000562713.3:ENST00000562828.5:ENST00000630396.1:ENST00000565514.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	67	2	3.08462	3.15268	3.22074	0.0078976	0.00362783	0.076155	0.055479
chr1	47286653	47286752	445827	0	-	0.393939	(0.378,0.408]	chr1	54021	27	INTRON	INTRON	STIL	ENSG00000123473.17	ENST00000360380.7:ENST00000371877.8:ENST00000337817.10:ENST00000683977.1:ENST00000682977.1:ENST00000396221.6:ENST00000447475.7:ENST00000436811.2:ENST00000682165.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	40	2	1.72045	3.15236	4.58427	0.0424671	0.0128325	0.161763	0.0926667
chr8	30803531	30803630	3933058	0	-	0.40404	(0.378,0.408]	chr8	360326	34	INTRON	INTRON	PPP2CB	ENSG00000104695.13	ENST00000221138.9:ENST00000518564.1:ENST00000518243.5:ENST00000520056.1:ENST00000520500.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	40	2	1.72045	3.15236	4.58427	0.0424671	0.0128325	0.161763	0.0926667
chr1	1768533	1768632	361637	0	-	0.494949	(0.476,0.515]	chr1	42219	27	INTRON	INTRON	NADK	ENSG00000008130.15	ENST00000378625.5:ENST00000341991.7:ENST00000341426.9:ENST00000492845.6:ENST00000492768.5:ENST00000460602.5:ENST00000464373.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	42	2	1.52615	3.152355	4.77856	0.0739267	0.00305743	0.190914	0.0509893
chr1	11935554	11935653	25993	0	+	0.474747	(0.44,0.476]	chr1	2949	3	INTRON	INTRON	PLOD1	ENSG00000083444.17	ENST00000485046.5:ENST00000449038.5:ENST00000196061.5:ENST00000358133.5:ENST00000429000.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	24	2	2.29425	3.1523149999999998	4.01038	0.0518406	0.0433743	0.176696	0.148082
chr1	27796513	27796612	54743	0	+	0.474747	(0.44,0.476]	chr1	7062	25	INTRON	INTRON	STX12	ENSG00000117758.14	ENST00000373943.9:ENST00000440806.2:ENST00000468761.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	24	2	2.29425	3.1523149999999998	4.01038	0.0518406	0.0433743	0.176696	0.148082
chr10	50434655	50434755	4618793	0	-	0.45	(0.44,0.476]	chr10	425432	7	INTRON	INTRON	SGMS1	ENSG00000198964.14	ENST00000429490.5:ENST00000361781.7:ENST00000619438.4:ENST00000609445.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	24	2	2.29425	3.1523149999999998	4.01038	0.0518406	0.0433743	0.176696	0.148082
chr10	92509390	92509469	4664752	0	-	0.455696	(0.44,0.476]	chr10	429844	1	INTRON	INTRON	IDE	ENSG00000119912.18	ENST00000265986.11:ENST00000679312.1:ENST00000650060.1:ENST00000679089.1:ENST00000677569.1:ENST00000677096.1:ENST00000679222.1:ENST00000676540.1:ENST00000678026.1:ENST00000676626.1:ENST00000679069.1:ENST00000678977.1:ENST00000679232.1:ENST00000678844.1:ENST00000679174.1:ENST00000678673.1:ENST00000676816.1:ENST00000678715.1:ENST00000678458.1:ENST00000677079.1:ENST00000677434.1:ENST00000678248.1:ENST00000478361.6:ENST00000677978.1:ENST00000677196.1:ENST00000677953.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	24	2	2.29425	3.1523149999999998	4.01038	0.0518406	0.0433743	0.176696	0.148082
chr10	92878376	92878476	4491915	0	+	0.47	(0.44,0.476]	chr10	413705	294	INTRON	INTRON	EXOC6	ENSG00000138190.17	ENST00000671701.1:ENST00000672817.1:ENST00000371552.8:ENST00000443748.6:ENST00000371543.5:ENST00000260762.10	protein_coding	protein_coding	protein_coding	protein_coding	1	24	2	2.29425	3.1523149999999998	4.01038	0.0518406	0.0433743	0.176696	0.148082
chr10	110936199	110936299	4521569	0	+	0.47	(0.44,0.476]	chr10	417201	149	INTRON	INTRON	SHOC2	ENSG00000108061.13	ENST00000688928.1:ENST00000689997.1:ENST00000689300.1:ENST00000691441.1:ENST00000451838.2:ENST00000692776.1:ENST00000685613.1:ENST00000691903.1:ENST00000687592.1:ENST00000265277.10:ENST00000691151.1:ENST00000685059.1:ENST00000489390.1:ENST00000369452.9:ENST00000691369.1:ENST00000689118.1:ENST00000489783.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	24	2	2.29425	3.1523149999999998	4.01038	0.0518406	0.0433743	0.176696	0.148082
chr11	9152942	9153041	4907925	0	-	0.464646	(0.44,0.476]	chr11	460026	1	INTRON	INTRON	DENND5A	ENSG00000184014.9	ENST00000328194.8:ENST00000681203.1:ENST00000530780.2:ENST00000680358.1:ENST00000679999.1:ENST00000679458.1:ENST00000680470.1:ENST00000680599.1:ENST00000680554.1:ENST00000679745.1:ENST00000679926.1:ENST00000680252.1:ENST00000681425.1:ENST00000681158.1:ENST00000679460.1:ENST00000679568.1:ENST00000679446.1:ENST00000680294.1:ENST00000680742.1:ENST00000680885.1:ENST00000680576.1:ENST00000530044.5:ENST00000527700.5:ENST00000526707.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	24	2	2.29425	3.1523149999999998	4.01038	0.0518406	0.0433743	0.176696	0.148082
chr11	119270235	119270335	4875511	0	+	0.45	(0.44,0.476]	chr11	455674	372	INTRON	INTRON	CBL	ENSG00000110395.7	ENST00000634586.1:ENST00000634840.1:ENST00000264033.6:ENST00000637974.1	protein_coding	protein_coding	protein_coding	protein_coding	1	24	2	2.29425	3.1523149999999998	4.01038	0.0518406	0.0433743	0.176696	0.148082
chr12	21379020	21379120	5277040	0	-	0.45	(0.44,0.476]	chr12	502878	41	INTRON	INTRON	SLCO1A2	ENSG00000084453.17	ENST00000307378.10:ENST00000544290.5:ENST00000413682.5:ENST00000453443.5:ENST00000473830.5:ENST00000450590.5:ENST00000435179.5:ENST00000421287.5:ENST00000416627.1:ENST00000430803.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	24	2	2.29425	3.1523149999999998	4.01038	0.0518406	0.0433743	0.176696	0.148082
chr16	23847177	23847277	6323870	0	+	0.45	(0.44,0.476]	chr16	605693	94	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000498058.1:ENST00000645517.1:ENST00000498739.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	24	2	2.29425	3.1523149999999998	4.01038	0.0518406	0.0433743	0.176696	0.148082
chr16	74637555	74637655	6525503	0	-	0.45	(0.44,0.476]	chr16	631885	3	SS5_PROX	SS5_PROX:INTRON	RFWD3	ENSG00000168411.14	ENST00000361070.9:ENST00000571750.5	protein_coding	protein_coding	protein_coding	protein_coding	1	24	2	2.29425	3.1523149999999998	4.01038	0.0518406	0.0433743	0.176696	0.148082
chr18	55340380	55340480	6976182	0	-	0.47	(0.44,0.476]	chr18	690334	77	INTRON	INTRON	TCF4	ENSG00000196628.20	ENST00000354452.8:ENST00000616053.4:ENST00000636400.2:ENST00000356073.8:ENST00000643689.1:ENST00000636751.2:ENST00000635822.2:ENST00000637115.2:ENST00000638154.3:ENST00000637239.2:ENST00000637250.2:ENST00000636822.2:ENST00000635990.2:ENST00000564999.5:ENST00000629387.2:ENST00000568673.5:ENST00000543082.5:ENST00000540999.5:ENST00000537578.5:ENST00000562680.5:ENST00000568740.5:ENST00000537856.7:ENST00000544241.6:ENST00000675707.1:ENST00000561992.5:ENST00000674764.1:ENST00000565018.6:ENST00000566279.5:ENST00000566286.5:ENST00000567880.5:ENST00000564228.5:ENST00000398339.5:ENST00000564403.6:ENST00000570177.6:ENST00000626584.2:ENST00000629343.2:ENST00000628636.2:ENST00000627136.2:ENST00000628078.2:ENST00000562030.3:ENST00000563686.5:ENST00000566514.5:ENST00000630828.2:ENST00000562607.5:ENST00000569012.5:ENST00000630268.2:ENST00000630319.2:ENST00000568169.5:ENST00000625925.2:ENST00000566777.5:ENST00000565580.3:ENST00000630712.2:ENST00000568186.5:ENST00000562638.5:ENST00000631043.2:ENST00000565908.6:ENST00000627685.2:ENST00000626595.2:ENST00000626425.2:ENST00000566376.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	24	2	2.29425	3.1523149999999998	4.01038	0.0518406	0.0433743	0.176696	0.148082
chr19	21041662	21041762	7039326	0	+	0.46	(0.44,0.476]	chr19	701855	50	INTRON	INTRON	ZNF430	ENSG00000118620.13	ENST00000599548.5:ENST00000594110.5:ENST00000261560.10	protein_coding	protein_coding	protein_coding	protein_coding	1	24	2	2.29425	3.1523149999999998	4.01038	0.0518406	0.0433743	0.176696	0.148082
chr19	38649958	38650058	7065751	0	+	0.45	(0.44,0.476]	chr19	705486	13	INTRON	INTRON	ACTN4	ENSG00000130402.13	ENST00000252699.7:ENST00000588618.5:ENST00000440400.2:ENST00000424234.7:ENST00000589528.1:ENST00000390009.7:ENST00000495553.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	24	2	2.29425	3.1523149999999998	4.01038	0.0518406	0.0433743	0.176696	0.148082
chr2	47885632	47885732	1115915	0	-	0.45	(0.44,0.476]	chr2	119690	194	INTRON	INTRON	FBXO11	ENSG00000138081.22	ENST00000684712.1:ENST00000682451.1:ENST00000403359.8:ENST00000402508.5:ENST00000683894.1:ENST00000681999.1:ENST00000682975.1:ENST00000684085.1:ENST00000492225.5:ENST00000424163.2:ENST00000480038.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	24	2	2.29425	3.1523149999999998	4.01038	0.0518406	0.0433743	0.176696	0.148082
chr21	39219357	39219456	7464570	0	-	0.464646	(0.44,0.476]	chr21	760426	3	INTRON	INTRON	BRWD1	ENSG00000185658.14	ENST00000333229.6:ENST00000342449.8:ENST00000446924.5:ENST00000380800.7:ENST00000424441.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	24	2	2.29425	3.1523149999999998	4.01038	0.0518406	0.0433743	0.176696	0.148082
chr6	20474049	20474149	2828171	0	+	0.47	(0.44,0.476]	chr6	265583	340	INTRON	INTRON	E2F3	ENSG00000112242.16	ENST00000346618.8:ENST00000535432.2	protein_coding	protein_coding	protein_coding	protein_coding	1	24	2	2.29425	3.1523149999999998	4.01038	0.0518406	0.0433743	0.176696	0.148082
chr6	20592442	20592542	2828965	0	+	0.45	(0.44,0.476]	chr6	265649	329	INTRON	INTRON	CDKAL1	ENSG00000145996.11	ENST00000274695.8:ENST00000378610.1	protein_coding	protein_coding	protein_coding	protein_coding	1	24	2	2.29425	3.1523149999999998	4.01038	0.0518406	0.0433743	0.176696	0.148082
chr6	154782803	154782902	3002313	0	+	0.474747	(0.44,0.476]	chr6	280749	44	INTRON	INTRON	SCAF8	ENSG00000213079.10	ENST00000367186.7:ENST00000417268.3:ENST00000461219.5:ENST00000367178.8:ENST00000464628.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	24	2	2.29425	3.1523149999999998	4.01038	0.0518406	0.0433743	0.176696	0.148082
chr7	45731216	45731315	3529049	0	-	0.464646	(0.44,0.476]	chr7	329227	18	INTRON	INTRON	SEPTIN7P2	ENSG00000214765.9	ENST00000338231.8:ENST00000688931.1:ENST00000429741.5:ENST00000689783.1:ENST00000693141.1:ENST00000684893.1:ENST00000690171.1:ENST00000428414.5:ENST00000686085.1:ENST00000686032.1:ENST00000691119.1:ENST00000688953.1:ENST00000690342.1:ENST00000690179.1:ENST00000413875.6:ENST00000689506.1:ENST00000691450.1:ENST00000687862.1:ENST00000686398.1	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript	1	24	2	2.29425	3.1523149999999998	4.01038	0.0518406	0.0433743	0.176696	0.148082
chr8	99027028	99027127	3811395	0	+	0.454545	(0.44,0.476]	chr8	353059	127	INTRON	INTRON	VPS13B	ENSG00000132549.20	ENST00000496144.5:ENST00000683334.1:ENST00000682853.1:ENST00000357162.7:ENST00000358544.7:ENST00000683619.1:ENST00000441350.2:ENST00000684269.1:ENST00000682806.1:ENST00000683869.1:ENST00000682153.1:ENST00000682358.1:ENST00000682145.1:ENST00000355155.6:ENST00000682234.1:ENST00000683486.1:ENST00000684308.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	24	2	2.29425	3.1523149999999998	4.01038	0.0518406	0.0433743	0.176696	0.148082
chr9	34244101	34244200	4111927	0	+	0.474747	(0.44,0.476]	chr9	374742	16	INTRON	INTRON	UBAP1	ENSG00000165006.14	ENST00000625521.2:ENST00000379186.8:ENST00000297661.9:ENST00000626262.2:ENST00000359544.2	protein_coding	protein_coding	protein_coding	protein_coding	1	24	2	2.29425	3.1523149999999998	4.01038	0.0518406	0.0433743	0.176696	0.148082
chr9	129050799	129050899	4208657	0	+	0.47	(0.44,0.476]	chr9	385499	1	SS3_PROX	SS3_PROX:INTRON	MIGA2	ENSG00000148343.19	ENST00000684074.1:ENST00000439290.5:ENST00000445183.5:ENST00000358369.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	24	2	2.29425	3.1523149999999998	4.01038	0.0518406	0.0433743	0.176696	0.148082
chrX	119604839	119604937	7873104	0	-	0.469388	(0.44,0.476]	chrX	801781	9	INTRON	INTRON	NKRF	ENSG00000186416.18	ENST00000304449.8:ENST00000542113.3:ENST00000688521.1	protein_coding	protein_coding	protein_coding	protein_coding	1	24	2	2.29425	3.1523149999999998	4.01038	0.0518406	0.0433743	0.176696	0.148082
chrX	154079604	154079704	7912917	0	-	0.45	(0.44,0.476]	chrX	805637	61	INTRON	INTRON	MECP2	ENSG00000169057.24	ENST00000303391.11:ENST00000453960.7:ENST00000628176.2:ENST00000407218.5:ENST00000369957.5:ENST00000631210.1:ENST00000496908.5:ENST00000415944.3:ENST00000630151.2:ENST00000676382.1:ENST00000611468.2:ENST00000637533.1:ENST00000675526.1:ENST00000637791.1:ENST00000675841.1:ENST00000674996.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	24	2	2.29425	3.1523149999999998	4.01038	0.0518406	0.0433743	0.176696	0.148082
chr12	19135848	19135948	5088332	0	+	0.36	(0.35,0.378]	chr12	480740	30	INTRON	INTRON	PLEKHA5	ENSG00000052126.15	ENST00000429027.7:ENST00000540972.5:ENST00000299275.10:ENST00000539256.5:ENST00000538714.5:ENST00000535357.5:ENST00000538034.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	105	2	3.12435	3.152195	3.18004	7.66038e-4	3.8703e-4	0.025385	0.0177751
chr5	10740526	10740625	2568120	0	-	0.343434	(0.32,0.35]	chr5	246128	59	INTRON	INTRON	DAP	ENSG00000112977.16	ENST00000230895.11:ENST00000432074.2:ENST00000514882.5:ENST00000508253.5:ENST00000510546.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	63	2	2.68921	3.15214	3.61507	0.0230336	6.48785e-4	0.118056	0.0230814
chr6	15280942	15281042	2823295	0	+	0.39	(0.378,0.408]	chr6	265190	316	INTRON	INTRON	JARID2	ENSG00000008083.14	ENST00000341776.7:ENST00000397311.4	protein_coding	protein_coding	protein_coding	protein_coding	9	209	2	3.0837	3.15212	3.22054	3.60996e-5	1.61533e-5	0.00508987	0.00303754
chr11	70416413	70416512	4821801	0	+	0.444444	(0.44,0.476]	chr11	449628	3	INTRON	INTRON	CTTN	ENSG00000085733.16	ENST00000346329.7:ENST00000301843.13:ENST00000376561.7:ENST00000415461.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	115	2	2.77169	3.15198	3.53227	8.89744e-4	5.02287e-5	0.0274757	0.00581045
chr16	15678349	15678449	6307170	0	+	0.44	(0.408,0.44]	chr16	603438	4	SS5_PROX	SS5_PROX:INTRON	NDE1	ENSG00000072864.16	ENST00000396355.5:ENST00000674888.1:ENST00000675171.1:ENST00000675951.1:ENST00000674900.1:ENST00000674588.1:ENST00000674538.1:ENST00000396354.6:ENST00000675926.1:ENST00000573203.5:ENST00000674995.1:ENST00000674554.1:ENST00000674581.1:ENST00000577101.6:ENST00000572756.6:ENST00000574163.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	46	2	1.70409	3.1519399999999997	4.59979	0.028108	0.0109537	0.137011	0.0873034
chr15	63612050	63612150	6198577	0	-	0.56	(0.515,0.57]	chr15	590995	4	SS5_PROX	SS5_PROX:INTRON	HERC1	ENSG00000103657.14	ENST00000443617.7	protein_coding	protein_coding	protein_coding	protein_coding	2	31	2	1.7074	3.15185	4.5963	0.0779432	0.00370287	0.196685	0.0561162
chr17	42006454	42006554	6770769	0	-	0.53	(0.515,0.57]	chr17	666683	25	INTRON	INTRON	DNAJC7	ENSG00000168259.17	ENST00000316603.12:ENST00000457167.9:ENST00000586335.2:ENST00000674306.1:ENST00000426588.7:ENST00000674504.1:ENST00000674472.1:ENST00000674233.1:ENST00000674166.1:ENST00000674179.1:ENST00000674481.1:ENST00000674249.1:ENST00000585866.6:ENST00000589576.6:ENST00000674214.1:ENST00000588814.5:ENST00000590774.6:ENST00000674303.1:ENST00000674453.1:ENST00000674252.1:ENST00000674287.1:ENST00000674497.1:ENST00000674411.1:ENST00000585693.2:ENST00000674337.1:ENST00000590847.2:ENST00000674485.1:ENST00000674175.1:ENST00000589810.5:ENST00000588641.6:ENST00000590348.6:ENST00000590886.7:ENST00000589586.6:ENST00000589773.5:ENST00000674425.1:ENST00000591787.1:ENST00000589547.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	31	2	1.7074	3.15185	4.5963	0.0779432	0.00370287	0.196685	0.0561162
chr9	83664736	83664832	4272641	0	-	0.40625	(0.378,0.408]	chr9	392940	3	SS5_PROX	SS5_PROX:INTRON	UBQLN1	ENSG00000135018.14	ENST00000376395.9:ENST00000533705.5:ENST00000257468.11:ENST00000526134.1:ENST00000527373.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	46	2	1.5653	3.151845	4.73839	0.043739	0.00837252	0.162255	0.0774402
chr1	25226749	25226845	402225	0	-	0.489583	(0.476,0.515]	chr1	48319	13	INTRON	INTRON	SYF2	ENSG00000117614.10	ENST00000236273.9:ENST00000354361.3	protein_coding	protein_coding	protein_coding	protein_coding	4	45	2	1.53534	3.151805	4.76827	0.0476737	0.00600704	0.170116	0.0674604
chr3	33591414	33591513	1652710	0	-	0.50505	(0.476,0.515]	chr3	169551	23	INTRON	INTRON	CLASP2	ENSG00000163539.18	ENST00000399362.8:ENST00000682230.1:ENST00000468888.6:ENST00000359576.9:ENST00000650653.1:ENST00000480013.6:ENST00000461133.8:ENST00000635664.1	protein_coding	protein_coding	protein_coding	protein_coding	2	54	2	2.7646	3.1517749999999998	3.53895	0.0162075	0.00075485700000000005	0.101453	0.0251966
chr8	25441754	25441851	3926177	0	-	0.515464	(0.515,0.57]	chr8	359437	7	INTRON	INTRON	KCTD9	ENSG00000104756.16	ENST00000221200.9:ENST00000519665.5:ENST00000523140.5:ENST00000522493.5:ENST00000518067.5:ENST00000518997.5:ENST00000523294.5:ENST00000521458.5:ENST00000524217.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	62	2	3.04798	3.151725	3.25547	0.00261721	5.9198e-4	0.0455413	0.0221485
chr1	23343411	23343510	399588	0	-	0.434343	(0.408,0.44]	chr1	47894	20	INTRON	INTRON	HNRNPR	ENSG00000125944.21	ENST00000478691.5:ENST00000302271.11:ENST00000374616.7:ENST00000374612.5:ENST00000675048.1:ENST00000606561.5:ENST00000476451.2:ENST00000490652.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	56	2	2.89193	3.1516849999999996	3.41144	0.00950364	0.00178336	0.0863579	0.0379201
chr19	21190387	21190487	7040449	0	+	0.34	(0.32,0.35]	chr19	701964	6	UTR3	UTR3:EXON_MRNA	ZNF431	ENSG00000196705.8	ENST00000311048.11	protein_coding	protein_coding	protein_coding	protein_coding	2	63	2	3.0247	3.15164	3.27858	0.00671684	0.00368368	0.0738715	0.0535094
chr17	40288432	40288532	6610130	0	+	0.6	(0.57,1]	chr17	643781	3	SS5_PROX	SS5_PROX:INTRON	CDC6	ENSG00000094804.12	ENST00000209728.9:ENST00000580824.5:ENST00000577249.1:ENST00000649662.1	protein_coding	protein_coding	protein_coding	protein_coding	2	22	2	2.13445	3.15163	4.16881	0.0241482	0.00574776	0.12011	0.0681402
chr1	26713123	26713223	51342	0	+	0.29	(0.28,0.32]	chr1	6542	152	INTRON	INTRON	ARID1A	ENSG00000117713.21	ENST00000430799.7:ENST00000324856.13:ENST00000637465.1:ENST00000457599.6	protein_coding	protein_coding	protein_coding	protein_coding	4	109	2	2.84107	3.151585	3.4621	0.00218379	6.40806e-4	0.0417893	0.0228915
chr8	92854329	92854429	3990649	0	-	0.3	(0.28,0.32]	chr8	365358	679	INTRON	INTRON	FLJ46284	ENSG00000248858.7	ENST00000504861.2	lncRNA	lncRNA	lncRNA	lncRNA	3	46	2	1.71442	3.151585	4.58875	0.0454351	0.0230574	0.164236	0.118056
chr1	91017948	91018048	502487	0	-	0.38	(0.378,0.408]	chr1	59504	352	INTRON	INTRON	ZNF644	ENSG00000122482.22	ENST00000370440.5:ENST00000337393.10:ENST00000347275.9:ENST00000361321.5:ENST00000467231.5:ENST00000498303.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	16	342	2	2.58451	3.15154	3.71857	6.91582e-5	1.66745e-7	0.0073969	1.86945e-4
chr22	49600359	49600459	7602084	0	-	0.37	(0.35,0.378]	chr22	778570	47	INTRON	INTRON	MIR3667HG	ENSG00000188511.13	ENST00000414287.5:ENST00000416411.1:ENST00000689875.1	lncRNA	lncRNA	lncRNA	lncRNA	11	261	2	3.10849	3.151475	3.19446	7.93215e-5	2.27812e-6	0.00800722	9.46989e-4
chr12	31299022	31299121	5302583	0	-	0.393939	(0.378,0.408]	chr12	504664	4	INTRON	INTRON	SINHCAF	ENSG00000139146.14	ENST00000337682.9:ENST00000539409.5:ENST00000454658.6:ENST00000542983.1:ENST00000539004.5:ENST00000543615.1	protein_coding	protein_coding	protein_coding	protein_coding	3	74	2	2.82967	3.151445	3.47322	0.00189968	0.00147803	0.0402736	0.0348908
chr6	143441887	143441977	3242281	0	-	0.4	(0.378,0.408]	chr6	301154	6	UTR5	UTR5:EXON_MRNA:INTRON	ADAT2	ENSG00000189007.16	ENST00000237283.9:ENST00000606514.5	protein_coding	protein_coding	protein_coding	protein_coding	9	178	2	2.43387	3.15126	3.86865	2.83933e-4	1.51315e-5	0.0150568	0.0031179
chr3	155887255	155887347	1537294	0	+	0.315217	(0.28,0.32]	chr3	160083	8	EXON_LNCRNA	EXON_LNCRNA:INTRON	GMPS:ENSG00000288032	ENSG00000163655.16:ENSG00000288032.1	ENST00000496455.7:ENST00000295920.7:ENST00000663782.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	2	38	2	1.96475	3.1512000000000002	4.33765	0.0428385	0.039714	0.162255	0.143072
chr3	182976194	182976294	1879891	0	-	0.3	(0.28,0.32]	chr3	187821	101	INTRON	INTRON	DCUN1D1	ENSG00000043093.15	ENST00000292782.9:ENST00000632685.1:ENST00000460412.6:ENST00000469954.5:ENST00000492563.1:ENST00000497606.5:ENST00000487822.5:ENST00000466812.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	38	2	1.96475	3.1512000000000002	4.33765	0.0428385	0.039714	0.162255	0.143072
chr5	109360368	109360467	2701869	0	-	0.30303	(0.28,0.32]	chr5	254328	40	INTRON	INTRON	PJA2	ENSG00000198961.10	ENST00000361557.4:ENST00000361189.7	protein_coding	protein_coding	protein_coding	protein_coding	2	38	2	1.96475	3.1512000000000002	4.33765	0.0428385	0.039714	0.162255	0.143072
chr9	130594782	130594882	4213244	0	+	0.31	(0.28,0.32]	chr9	386268	128	INTRON	INTRON	FUBP3	ENSG00000107164.16	ENST00000319725.10:ENST00000650723.1:ENST00000465949.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	38	2	1.96475	3.1512000000000002	4.33765	0.0428385	0.039714	0.162255	0.143072
chr17	60526086	60526164	6807057	0	-	0.641026	(0.57,1]	chr17	672478	3	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	APPBP2	ENSG00000062725.10	ENST00000083182.8:ENST00000589341.5:ENST00000590244.1:ENST00000585368.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	91	2	2.85268	3.151185	3.44969	3.419e-5	5.72554e-6	0.00466891	0.00177762
chr1	227273506	227273606	651271	0	-	0.4	(0.378,0.408]	chr1	77110	84	INTRON	INTRON	CDC42BPA	ENSG00000143776.20	ENST00000366766.8:ENST00000366769.7:ENST00000334218.9:ENST00000366767.7:ENST00000366764.8:ENST00000478573.6:ENST00000682551.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	75	2	2.65815	3.15117	3.64419	0.00391167	7.25777e-4	0.0569957	0.0247646
chr14	21258349	21258448	5835056	0	-	0.393939	(0.378,0.408]	chr14	554465	34	INTRON	INTRON	HNRNPC	ENSG00000092199.19	ENST00000336053.10:ENST00000553300.6:ENST00000554969.5:ENST00000556142.5:ENST00000554455.5:ENST00000430246.6:ENST00000553753.5:ENST00000555309.5:ENST00000555914.5:ENST00000557442.5:ENST00000556628.5:ENST00000556513.5:ENST00000555883.5:ENST00000557201.5:ENST00000556897.5:ENST00000420743.6:ENST00000554539.5:ENST00000554383.5:ENST00000555215.5:ENST00000555137.5:ENST00000554891.5:ENST00000556226.5:ENST00000555176.5:ENST00000553614.5:ENST00000557336.1:ENST00000557768.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	200	2	2.38354	3.151065	3.91859	9.1328e-4	5.57849e-7	0.0278396	4.00823e-4
chr1	171529043	171529143	253661	0	+	0.43	(0.408,0.44]	chr1	30152	8	INTRON	INTRON	PRRC2C	ENSG00000117523.18	ENST00000647382.2:ENST00000367742.7:ENST00000476522.5:ENST00000338920.8:ENST00000426496.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	40	2	1.8749	3.151015	4.42713	0.0264246	0.0173083	0.133676	0.104099
chr21	39237084	39237184	7464757	0	-	0.44	(0.408,0.44]	chr21	760463	3	SS3_PROX	SS3_PROX:INTRON	BRWD1	ENSG00000185658.14	ENST00000333229.6:ENST00000342449.8:ENST00000446924.5:ENST00000380800.7:ENST00000430093.5:ENST00000445245.5:ENST00000445668.5:ENST00000412604.1:ENST00000455867.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	40	2	1.8749	3.151015	4.42713	0.0264246	0.0173083	0.133676	0.104099
chr5	78362850	78362949	2396604	0	+	0.343434	(0.32,0.35]	chr5	231540	14	INTRON	INTRON	SCAMP1	ENSG00000085365.18	ENST00000614488.4:ENST00000618166.4:ENST00000621999.5:ENST00000511551.2:ENST00000510030.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	40	2	1.83416	3.15087	4.46758	0.0631198	0.0119306	0.176946	0.0962115
chr9	91932320	91932420	4285089	0	-	0.33	(0.32,0.35]	chr9	393926	80	INTRON	INTRON	ROR2	ENSG00000169071.15	ENST00000375715.5:ENST00000375708.4:ENST00000495386.5:ENST00000546883.1:ENST00000476440.1:ENST00000493846.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	40	2	1.83416	3.15087	4.46758	0.0631198	0.0119306	0.176946	0.0962115
chr4	32054286	32054386	1941991	0	+	0.3	(0.28,0.32]	chr4	194727	561	INTRON	INTRON	LINC02506	ENSG00000251129.3	ENST00000662669.1:ENST00000665582.2:ENST00000667252.2:ENST00000660373.2:ENST00000684849.1:ENST00000513211.2:ENST00000659613.1:ENST00000657576.1:ENST00000686730.1:ENST00000685407.1:ENST00000685455.1:ENST00000655951.1	lncRNA	lncRNA	lncRNA	lncRNA	4	110	2	2.12073	3.15082	4.18091	0.0157269	4.86075e-5	0.101453	0.00568992
chr6	35672235	35672335	3087353	0	-	0.31	(0.28,0.32]	chr6	288789	290	INTRON	INTRON	FKBP5	ENSG00000096060.15	ENST00000536438.5:ENST00000539068.5:ENST00000357266.9:ENST00000542713.1	protein_coding	protein_coding	protein_coding	protein_coding	5	148	2	2.88888	3.150715	3.41255	8.6776e-4	1.55656e-4	0.0269488	0.0106835
chr1	21765974	21766074	396698	0	-	0.37	(0.35,0.378]	chr1	47345	78	INTRON	INTRON	USP48	ENSG00000090686.16	ENST00000400301.5:ENST00000308271.14:ENST00000529637.5:ENST00000421625.6:ENST00000527823.5:ENST00000532737.1:ENST00000489108.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	50	2	1.81955	3.150695	4.48184	0.0194679	0.0191702	0.11986	0.108861
chr2	61421931	61422031	1130065	0	-	0.36	(0.35,0.378]	chr2	121499	7	INTRON	INTRON	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000453133.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	50	2	1.81955	3.150695	4.48184	0.0194679	0.0191702	0.11986	0.108861
chr10	27116921	27116998	4585898	0	-	0.324675	(0.32,0.35]	chr10	422689	2	INTRON	INTRON	YME1L1	ENSG00000136758.20	ENST00000376016.8:ENST00000613434.4:ENST00000326799.7	protein_coding	protein_coding	protein_coding	protein_coding	2	39	2	2.35591	3.1506	3.94529	0.0693433	0.0128129	0.184298	0.0990564
chr2	28900993	28901091	725239	0	+	0.418367	(0.408,0.44]	chr2	83780	48	INTRON	INTRON	WDR43	ENSG00000163811.12	ENST00000407426.8:ENST00000434238.1:ENST00000440983.1	protein_coding	protein_coding	protein_coding	protein_coding	2	54	2	3.14706	3.1506	3.15414	0.00469847	0.00382411	0.0600108	0.0562562
chr12	93506199	93506299	5189647	0	+	0.4	(0.378,0.408]	chr12	490864	51	UTR3	UTR3:EXON_MRNA	MRPL42	ENSG00000198015.14	ENST00000549982.6:ENST00000552217.6	protein_coding	protein_coding	protein_coding	protein_coding	5	120	2	2.90102	3.150505	3.39999	3.47934e-4	1.88104e-4	0.0166215	0.012549
chr9	34013712	34013809	4245495	0	-	0.515464	(0.515,0.57]	chr9	390480	17	INTRON	INTRON	UBAP2	ENSG00000137073.24	ENST00000379238.7:ENST00000683659.1:ENST00000682239.1:ENST00000683140.1:ENST00000682209.1:ENST00000681980.1:ENST00000360802.6:ENST00000683252.1:ENST00000684158.1:ENST00000682914.1:ENST00000683717.1:ENST00000379239.9:ENST00000683084.1:ENST00000684754.1:ENST00000629575.2:ENST00000684298.1:ENST00000412543.6:ENST00000480885.5:ENST00000459988.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	174	2	2.755	3.1505	3.546	5.07421e-5	1.04649e-5	0.00617596	0.00235837
chr11	47509564	47509663	4949962	0	-	0.484848	(0.476,0.515]	chr11	464230	23	INTRON	INTRON	CELF1	ENSG00000149187.19	ENST00000310513.10:ENST00000687097.1:ENST00000531165.5:ENST00000532048.5:ENST00000530151.5:ENST00000525841.5:ENST00000528434.5:ENST00000543178.5:ENST00000526419.1:ENST00000528538.5:ENST00000526277.1	protein_coding	protein_coding	protein_coding	protein_coding	3	72	2	2.80651	3.15031	3.49411	0.00250121	9.23453e-4	0.0446195	0.0278392
chr2	55662625	55662724	1125442	0	-	0.393939	(0.378,0.408]	chr2	120771	2	INTRON	INTRON	PNPT1	ENSG00000138035.15	ENST00000447944.7:ENST00000415374.5:ENST00000260604.8:ENST00000415489.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	90	2	2.20712	3.15029	4.09346	0.00978751	4.66745e-5	0.0835427	0.00555772
chr10	7800491	7800591	4387645	0	+	0.47	(0.44,0.476]	chr10	405051	4	SS5_PROX	SS5_PROX:INTRON	ATP5F1C	ENSG00000165629.20	ENST00000493053.5:ENST00000335698.4:ENST00000356708.12:ENST00000465936.5:ENST00000473809.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	39	2	1.69402	3.150245	4.60647	0.0456129	0.0102339	0.164236	0.0850389
chr11	67296906	67297005	4814183	0	+	0.474747	(0.44,0.476]	chr11	448332	44	INTRON	INTRON	ANKRD13D	ENSG00000172932.16	ENST00000511455.7:ENST00000308440.11:ENST00000447274.7:ENST00000506531.5:ENST00000504186.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	39	2	1.69402	3.150245	4.60647	0.0456129	0.0102339	0.164236	0.0850389
chr2	178426955	178427053	930397	0	+	0.418367	(0.408,0.44]	chr2	102176	7	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	CHROMR	ENSG00000223960.8	ENST00000453026.7:ENST00000690483.1:ENST00000436616.4:ENST00000665039.1:ENST00000663803.1:ENST00000666480.1:ENST00000688877.1:ENST00000661271.1:ENST00000691722.1:ENST00000659708.2:ENST00000692047.1:ENST00000684892.1:ENST00000420672.1:ENST00000691078.1:ENST00000668138.1:ENST00000660374.1:ENST00000454488.6:ENST00000450044.1:ENST00000688261.1:ENST00000691493.1:ENST00000662743.1:ENST00000415236.1	lncRNA	lncRNA	lncRNA	lncRNA	3	72	2	3.05533	3.150215	3.2451	0.00337792	6.50769e-4	0.0516884	0.0231135
chr1	27601199	27601298	407449	0	-	0.515152	(0.476,0.515]	chr1	49026	331	INTRON	INTRON	AHDC1	ENSG00000126705.15	ENST00000247087.10:ENST00000673934.1:ENST00000644989.1:ENST00000374011.6:ENST00000642416.1:ENST00000642245.1:ENST00000643308.1:ENST00000490295.2:ENST00000645669.1:ENST00000480033.3:ENST00000644119.1:ENST00000643219.1:ENST00000646921.1:ENST00000646642.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	24	2	2.28264	3.1502049999999997	4.01777	0.0534132	0.0411361	0.179876	0.1451
chr1	37889156	37889256	425597	0	-	0.51	(0.476,0.515]	chr1	51609	2	SS5_PROX	SS5_PROX:INTRON	INPP5B	ENSG00000204084.13	ENST00000373023.6:ENST00000373024.8:ENST00000458109.6:ENST00000373027.5:ENST00000373026.5	protein_coding	protein_coding	protein_coding	protein_coding	1	24	2	2.28264	3.1502049999999997	4.01777	0.0534132	0.0411361	0.179876	0.1451
chr1	100991587	100991679	516927	0	-	0.5	(0.476,0.515]	chr1	60637	6	INTRON	INTRON	DPH5	ENSG00000117543.22	ENST00000370109.8:ENST00000370105.7:ENST00000427040.3:ENST00000690716.1:ENST00000488789.5:ENST00000492067.5:ENST00000481871.5:ENST00000464270.5:ENST00000342173.11:ENST00000466807.5:ENST00000477293.5:ENST00000498372.5:ENST00000488176.1:ENST00000490732.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	24	2	2.28264	3.1502049999999997	4.01777	0.0534132	0.0411361	0.179876	0.1451
chr1	229278132	229278231	333340	0	+	0.494949	(0.476,0.515]	chr1	38810	64	INTRON	INTRON	RAB4A	ENSG00000168118.12	ENST00000618010.4:ENST00000481981.1:ENST00000366690.5:ENST00000473894.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	24	2	2.28264	3.1502049999999997	4.01777	0.0534132	0.0411361	0.179876	0.1451
chr10	26808538	26808638	4583975	0	-	0.5	(0.476,0.515]	chr10	422397	309	INTRON	INTRON	ABI1	ENSG00000136754.18	ENST00000376138.7:ENST00000376166.5:ENST00000376160.5:ENST00000376139.6:ENST00000376142.6:ENST00000359188.8:ENST00000376170.8:ENST00000536334.5:ENST00000490841.6:ENST00000376137.8:ENST00000376140.4:ENST00000346832.10:ENST00000473481.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	24	2	2.28264	3.1502049999999997	4.01777	0.0534132	0.0411361	0.179876	0.1451
chr10	50364922	50365022	4618094	0	-	0.51	(0.476,0.515]	chr10	425422	202	INTRON	INTRON	SGMS1	ENSG00000198964.14	ENST00000429490.5:ENST00000361781.7:ENST00000619438.4:ENST00000492601.2:ENST00000609445.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	24	2	2.28264	3.1502049999999997	4.01777	0.0534132	0.0411361	0.179876	0.1451
chr11	3780847	3780946	4895007	0	-	0.494949	(0.476,0.515]	chr11	458924	12	INTRON	INTRON	NUP98	ENSG00000110713.17	ENST00000359171.8:ENST00000324932.12:ENST00000650171.1:ENST00000355260.7:ENST00000397004.8:ENST00000397007.8:ENST00000532475.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	24	2	2.28264	3.1502049999999997	4.01777	0.0534132	0.0411361	0.179876	0.1451
chr17	30823126	30823225	6752224	0	-	0.494949	(0.476,0.515]	chr17	663628	133	INTRON	INTRON	CRLF3	ENSG00000176390.12	ENST00000324238.7:ENST00000578692.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	24	2	2.28264	3.1502049999999997	4.01777	0.0534132	0.0411361	0.179876	0.1451
chr17	63715104	63715204	6811401	0	-	0.5	(0.476,0.515]	chr17	673091	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	STRADA	ENSG00000266173.7	ENST00000640870.1:ENST00000639835.1:ENST00000638708.1:ENST00000336174.12:ENST00000375840.9:ENST00000640999.1:ENST00000245865.10:ENST00000638702.1:ENST00000447001.8:ENST00000640979.1:ENST00000392950.9:ENST00000640086.1:ENST00000640679.1:ENST00000638276.1:ENST00000638888.1:ENST00000640827.1:ENST00000640397.1:ENST00000638698.1:ENST00000638193.1:ENST00000582137.6:ENST00000580039.6:ENST00000639521.1:ENST00000579340.5:ENST00000578801.6:ENST00000640174.1:ENST00000638309.1:ENST00000640183.1:ENST00000639135.1:ENST00000578008.6:ENST00000581243.6:ENST00000640741.1:ENST00000639192.1:ENST00000640707.1:ENST00000639603.1:ENST00000638718.1:ENST00000581505.6:ENST00000577375.5:ENST00000579549.6:ENST00000639816.1:ENST00000580338.5:ENST00000639778.1:ENST00000639940.1:ENST00000582030.5:ENST00000639164.1:ENST00000580288.2:ENST00000640924.1:ENST00000579350.1:ENST00000584110.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	24	2	2.28264	3.1502049999999997	4.01777	0.0534132	0.0411361	0.179876	0.1451
chr17	75141895	75141994	6835953	0	-	0.494949	(0.476,0.515]	chr17	675456	53	INTRON	INTRON	JPT1	ENSG00000189159.16	ENST00000409753.8:ENST00000476258.5:ENST00000482348.5:ENST00000304834.11:ENST00000356033.8:ENST00000470924.5:ENST00000481094.1:ENST00000481647.5:ENST00000580380.1:ENST00000581874.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	24	2	2.28264	3.1502049999999997	4.01777	0.0534132	0.0411361	0.179876	0.1451
chr17	76728903	76728998	6677439	0	+	0.505263	(0.476,0.515]	chr17	652155	12	INTRON	INTRON	METTL23	ENSG00000181038.14	ENST00000615984.4:ENST00000589977.5:ENST00000341249.11:ENST00000591571.5:ENST00000592849.5:ENST00000588783.5:ENST00000586738.5:ENST00000588563.5:ENST00000588302.5:ENST00000586752.5:ENST00000590964.5:ENST00000588822.1:ENST00000586200.1	protein_coding	protein_coding	protein_coding	protein_coding	1	24	2	2.28264	3.1502049999999997	4.01777	0.0534132	0.0411361	0.179876	0.1451
chr19	3111032	3111132	6998701	0	+	0.49	(0.476,0.515]	chr19	694044	3	INTRON	INTRON	GNA11	ENSG00000088256.9	ENST00000078429.9:ENST00000586763.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	24	2	2.28264	3.1502049999999997	4.01777	0.0534132	0.0411361	0.179876	0.1451
chr3	191344703	191344803	1589627	0	+	0.48	(0.476,0.515]	chr3	164575	146	INTRON	INTRON	CCDC50	ENSG00000152492.15	ENST00000392456.4:ENST00000392455.9	protein_coding	protein_coding	protein_coding	protein_coding	1	24	2	2.28264	3.1502049999999997	4.01777	0.0534132	0.0411361	0.179876	0.1451
chr9	77868565	77868665	4270315	0	-	0.48	(0.476,0.515]	chr9	392874	524	INTRON	INTRON	GNAQ	ENSG00000156052.11	ENST00000286548.9:ENST00000411677.1	protein_coding	protein_coding	protein_coding	protein_coding	1	24	2	2.28264	3.1502049999999997	4.01777	0.0534132	0.0411361	0.179876	0.1451
chr15	57017674	57017774	6033103	0	+	0.31	(0.28,0.32]	chr15	574669	159	INTRON	INTRON	TCF12	ENSG00000140262.18	ENST00000438423.6:ENST00000267811.9:ENST00000333725.10:ENST00000560190.5:ENST00000559609.5:ENST00000558908.5:ENST00000557843.5:ENST00000557947.5:ENST00000561152.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	43	2	1.86684	3.15012	4.4334	0.0605813	0.0163355	0.171122	0.109464
chr7	107076904	107077003	3377489	0	+	0.363636	(0.35,0.378]	chr7	316248	62	INTRON	INTRON	PRKAR2B	ENSG00000005249.13	ENST00000265717.5:ENST00000393613.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	47	2	1.4414	3.15005	4.8587	0.0629423	0.00695662	0.196658	0.0718189
chr12	56728793	56728893	5336270	0	-	0.53	(0.515,0.57]	chr12	510245	17	INTRON	INTRON	NACA:ENSG00000285625	ENSG00000196531.14:ENSG00000285625.1	ENST00000549855.5:ENST00000647707.1	protein_coding	protein_coding	protein_coding	protein_coding	1	23	2	2.12971	3.15004	4.17037	0.0757903	0.0139194	0.194427	0.10247
chr15	28245380	28245480	6123271	0	-	0.52	(0.515,0.57]	chr15	583286	1	SS5_PROX	SS5_PROX:INTRON	HERC2	ENSG00000128731.18	ENST00000261609.13	protein_coding	protein_coding	protein_coding	protein_coding	1	23	2	2.12971	3.15004	4.17037	0.0757903	0.0139194	0.194427	0.10247
chr15	28593235	28593331	5987946	0	+	0.520833	(0.515,0.57]	chr15	569244	16	INTRON	INTRON	HERC2P9	ENSG00000206149.11	ENST00000689985.1:ENST00000688694.1:ENST00000691570.1:ENST00000529537.2:ENST00000529624.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	1	23	2	2.12971	3.15004	4.17037	0.0757903	0.0139194	0.194427	0.10247
chr19	15375135	15375230	7147670	0	-	0.557895	(0.515,0.57]	chr19	722047	1	INTRON	INTRON	AKAP8	ENSG00000105127.10	ENST00000269701.7:ENST00000680461.1:ENST00000681812.1:ENST00000680336.1:ENST00000680245.1:ENST00000681018.1:ENST00000598597.7:ENST00000599883.2:ENST00000537303.5:ENST00000595416.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	23	2	2.12971	3.15004	4.17037	0.0757903	0.0139194	0.194427	0.10247
chr19	47169317	47169417	7084267	0	+	0.56	(0.515,0.57]	chr19	708793	1	SS3_PROX	SS3_PROX:INTRON	SAE1	ENSG00000142230.13	ENST00000594144.5:ENST00000413379.7:ENST00000600706.5:ENST00000270225.12:ENST00000598840.5:ENST00000414294.6:ENST00000660039.1:ENST00000664120.1:ENST00000596995.1:ENST00000392776.3:ENST00000659110.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	23	2	2.12971	3.15004	4.17037	0.0757903	0.0139194	0.194427	0.10247
chr2	61316560	61316659	1128984	0	-	0.535354	(0.515,0.57]	chr2	121374	12	INTRON	INTRON	USP34	ENSG00000115464.15	ENST00000398571.7	protein_coding	protein_coding	protein_coding	protein_coding	1	23	2	2.12971	3.15004	4.17037	0.0757903	0.0139194	0.194427	0.10247
chr2	85612759	85612859	821974	0	+	0.53	(0.515,0.57]	chr2	91630	4	SS5_PROX	SS5_PROX:INTRON	USP39	ENSG00000168883.20	ENST00000459775.5:ENST00000491659.5:ENST00000474572.6:ENST00000450066.6:ENST00000613444.4:ENST00000448971.5:ENST00000442708.5:ENST00000465282.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	23	2	2.12971	3.15004	4.17037	0.0757903	0.0139194	0.194427	0.10247
chr22	41167066	41167166	7522265	0	+	0.53	(0.515,0.57]	chr22	768645	4	SS5_PROX	SS5_PROX:INTRON	EP300	ENSG00000100393.14	ENST00000263253.9:ENST00000674155.1:ENST00000635584.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	23	2	2.12971	3.15004	4.17037	0.0757903	0.0139194	0.194427	0.10247
chr5	157788862	157788962	2757936	0	-	0.55	(0.515,0.57]	chr5	260240	1	SS5_PROX	SS5_PROX:INTRON	CLINT1	ENSG00000113282.14	ENST00000523094.5:ENST00000411809.7:ENST00000530742.5:ENST00000524306.1:ENST00000518855.5:ENST00000523908.5:ENST00000522381.1:ENST00000521047.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	23	2	2.12971	3.15004	4.17037	0.0757903	0.0139194	0.194427	0.10247
chr7	101951498	101951598	3367708	0	+	0.52	(0.515,0.57]	chr7	315229	185	INTRON	INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000497815.5:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000558469.5:ENST00000560541.5:ENST00000558836.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	23	2	2.12971	3.15004	4.17037	0.0757903	0.0139194	0.194427	0.10247
chr8	128020014	128020114	3862334	0	+	0.52	(0.515,0.57]	chr8	355521	29	INTRON	INTRON	PVT1	ENSG00000249859.13	ENST00000667305.1:ENST00000690350.1:ENST00000653522.1:ENST00000661830.1:ENST00000657289.1:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000657211.1:ENST00000653845.1:ENST00000651587.1:ENST00000692980.1:ENST00000654324.1:ENST00000657693.1:ENST00000666080.1:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000662410.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000657356.1:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000667714.1:ENST00000654105.1:ENST00000664995.1:ENST00000670714.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000668123.1:ENST00000666776.1:ENST00000659912.1:ENST00000670532.1:ENST00000523068.2:ENST00000671088.1:ENST00000663461.1:ENST00000513868.6:ENST00000692433.1:ENST00000523190.7:ENST00000685606.1:ENST00000690788.1:ENST00000685634.1:ENST00000653990.1:ENST00000655783.1:ENST00000656411.1:ENST00000664742.1:ENST00000655099.1:ENST00000662709.1:ENST00000512617.7:ENST00000660122.1:ENST00000666452.1:ENST00000659666.1:ENST00000659892.1:ENST00000521600.5:ENST00000522875.5:ENST00000653497.1:ENST00000668098.1:ENST00000659106.1:ENST00000666147.1:ENST00000658350.1:ENST00000656999.1:ENST00000664610.1:ENST00000671092.1:ENST00000653853.1	lncRNA	lncRNA	lncRNA	lncRNA	1	23	2	2.12971	3.15004	4.17037	0.0757903	0.0139194	0.194427	0.10247
chr3	196502572	196502672	1900011	0	-	0.41	(0.408,0.44]	chr3	190262	3	SS5_PROX	SS5_PROX:INTRON	RNF168	ENSG00000163961.4	ENST00000318037.3:ENST00000437070.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	162	2	2.84417	3.1499699999999997	3.45577	1.29081e-4	3.56421e-5	0.0103343	0.00477817
chr1	25243127	25243205	402301	0	-	0.423077	(0.408,0.44]	chr1	48347	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RSRP1	ENSG00000117616.18	ENST00000243189.12:ENST00000498238.1:ENST00000569495.5:ENST00000568254.5:ENST00000565733.5:ENST00000566395.5:ENST00000473314.6:ENST00000570063.5:ENST00000564223.5:ENST00000475766.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	24	2	2.2957	3.149775	4.00385	0.0516458	0.0454568	0.176696	0.149888
chr10	22639229	22639329	4579744	0	-	0.41	(0.408,0.44]	chr10	422018	292	INTRON	INTRON	PIP4K2A	ENSG00000150867.14	ENST00000376573.9:ENST00000545335.5	protein_coding	protein_coding	protein_coding	protein_coding	1	24	2	2.2957	3.149775	4.00385	0.0516458	0.0454568	0.176696	0.149888
chr10	26842978	26843077	4584321	0	-	0.424242	(0.408,0.44]	chr10	422409	28	INTRON	INTRON	ABI1	ENSG00000136754.18	ENST00000376138.7:ENST00000376166.5:ENST00000376160.5:ENST00000376139.6:ENST00000376142.6:ENST00000359188.8:ENST00000376170.8:ENST00000536334.5:ENST00000490841.6:ENST00000376137.8:ENST00000376140.4:ENST00000346832.10	protein_coding	protein_coding	protein_coding	protein_coding	1	24	2	2.2957	3.149775	4.00385	0.0516458	0.0454568	0.176696	0.149888
chr14	26851838	26851938	5662859	0	+	0.44	(0.408,0.44]	chr14	540149	78	INTRON	INTRON	ENSG00000258081	ENSG00000258081.4	ENST00000656336.1:ENST00000550024.1:ENST00000552303.1:ENST00000664825.1	lncRNA	lncRNA	lncRNA	lncRNA	1	24	2	2.2957	3.149775	4.00385	0.0516458	0.0454568	0.176696	0.149888
chr14	100274197	100274297	5815158	0	+	0.43	(0.408,0.44]	chr14	551345	1	SS3_PROX	SS3_PROX:INTRON	YY1	ENSG00000100811.14	ENST00000262238.10:ENST00000553625.5:ENST00000554804.1:ENST00000651219.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	24	2	2.2957	3.149775	4.00385	0.0516458	0.0454568	0.176696	0.149888
chr15	25420655	25420752	6121656	0	-	0.42268	(0.408,0.44]	chr15	582924	1	UTR5	UTR5:EXON_MRNA:INTRON	UBE3A	ENSG00000114062.22	ENST00000648336.2:ENST00000438097.6:ENST00000635914.1:ENST00000638155.1:ENST00000637886.1:ENST00000638011.1:ENST00000649550.1:ENST00000650110.1:ENST00000630424.2:ENST00000566215.5:ENST00000428984.6:ENST00000675177.1:ENST00000675593.1:ENST00000625778.3:ENST00000675000.1:ENST00000626793.2:ENST00000628733.2:ENST00000630907.2:ENST00000675038.1:ENST00000629886.2:ENST00000628267.2:ENST00000629252.2:ENST00000625681.2:ENST00000626589.2:ENST00000627018.1:ENST00000676452.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	24	2	2.2957	3.149775	4.00385	0.0516458	0.0454568	0.176696	0.149888
chr15	75415810	75415910	6223710	0	-	0.44	(0.408,0.44]	chr15	594498	11	INTRON	INTRON	SIN3A	ENSG00000169375.16	ENST00000394947.8:ENST00000360439.8:ENST00000394949.8:ENST00000564778.5:ENST00000562776.5:ENST00000568431.5	protein_coding	protein_coding	protein_coding	protein_coding	1	24	2	2.2957	3.149775	4.00385	0.0516458	0.0454568	0.176696	0.149888
chr17	5003026	5003111	6550331	0	+	0.411765	(0.408,0.44]	chr17	635780	2	SS5_PROX	SS5_PROX:INTRON	KIF1C	ENSG00000129250.12	ENST00000320785.10	protein_coding	protein_coding	protein_coding	protein_coding	1	24	2	2.2957	3.149775	4.00385	0.0516458	0.0454568	0.176696	0.149888
chr19	5931711	5931791	7125127	0	-	0.425	(0.408,0.44]	chr19	717329	2	SS3_PROX	SS3_PROX:INTRON	RANBP3	ENSG00000031823.14	ENST00000340578.10:ENST00000439268.6:ENST00000592771.5:ENST00000586344.5:ENST00000591092.5:ENST00000034275.12:ENST00000587479.2:ENST00000587411.5:ENST00000592621.5:ENST00000590623.5:ENST00000591736.5:ENST00000590953.5:ENST00000588879.5:ENST00000587159.5:ENST00000586117.5:ENST00000589353.5:ENST00000587463.5:ENST00000588010.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	24	2	2.2957	3.149775	4.00385	0.0516458	0.0454568	0.176696	0.149888
chr19	48326478	48326553	7087401	0	+	0.413333	(0.408,0.44]	chr19	709194	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	EMP3	ENSG00000142227.11	ENST00000599704.5:ENST00000596315.5:ENST00000594198.1:ENST00000597529.1:ENST00000270221.11:ENST00000599255.5:ENST00000597279.5:ENST00000593437.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	24	2	2.2957	3.149775	4.00385	0.0516458	0.0454568	0.176696	0.149888
chr2	188251331	188251431	1295034	0	-	0.44	(0.408,0.44]	chr2	135671	224	INTRON	INTRON	LINC01090	ENSG00000231689.3	ENST00000434418.2:ENST00000632331.1:ENST00000415357.1	lncRNA	lncRNA	lncRNA	lncRNA	1	24	2	2.2957	3.149775	4.00385	0.0516458	0.0454568	0.176696	0.149888
chr2	238190372	238190472	1344114	0	-	0.42	(0.408,0.44]	chr2	140926	4	SS3_PROX	SS3_PROX:INTRON	ILKAP	ENSG00000132323.9	ENST00000254654.8:ENST00000463129.5:ENST00000612675.4:ENST00000622223.4:ENST00000457149.1:ENST00000498727.5:ENST00000467133.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	24	2	2.2957	3.149775	4.00385	0.0516458	0.0454568	0.176696	0.149888
chr20	49669795	49669895	7353187	0	-	0.42	(0.408,0.44]	chr20	749846	127	INTRON	INTRON	B4GALT5	ENSG00000158470.5	ENST00000371711.4	protein_coding	protein_coding	protein_coding	protein_coding	1	24	2	2.2957	3.149775	4.00385	0.0516458	0.0454568	0.176696	0.149888
chr3	60117737	60117837	1710791	0	-	0.43	(0.408,0.44]	chr3	176138	370	INTRON	INTRON	FHIT	ENSG00000189283.10	ENST00000492590.6:ENST00000476844.5:ENST00000468189.5:ENST00000488467.5	protein_coding	protein_coding	protein_coding	protein_coding	1	24	2	2.2957	3.149775	4.00385	0.0516458	0.0454568	0.176696	0.149888
chr6	85537418	85537517	3150343	0	-	0.434343	(0.408,0.44]	chr6	293733	6	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	ENSG00000271793:SNX14	ENSG00000271793.2:ENSG00000135317.14	ENST00000682083.1:ENST00000683074.1:ENST00000681965.1:ENST00000682171.1:ENST00000684150.1:ENST00000683785.1:ENST00000682497.1:ENST00000684647.1:ENST00000683643.1:ENST00000682023.1:ENST00000682022.1:ENST00000683542.1:ENST00000683126.1:ENST00000683857.1:ENST00000683898.1:ENST00000682854.1:ENST00000682491.1:ENST00000682174.1:ENST00000684239.1:ENST00000682939.1:ENST00000684570.1:ENST00000682057.1:ENST00000682878.1:ENST00000683880.1:ENST00000684422.1:ENST00000682504.1:ENST00000683726.1:ENST00000684680.1:ENST00000683196.1:ENST00000683458.1:ENST00000683803.1:ENST00000684281.1:ENST00000682991.1:ENST00000683754.1:ENST00000683481.1:ENST00000682455.1:ENST00000682034.1:ENST00000684451.1:ENST00000683583.1:ENST00000682776.1:ENST00000683873.1:ENST00000683878.1:ENST00000683195.1:ENST00000682995.1:ENST00000682374.1:ENST00000683698.1:ENST00000682454.1:ENST00000682694.1:ENST00000682412.1:ENST00000514801.2:ENST00000682682.1:ENST00000346348.7:ENST00000314673.8:ENST00000682633.1:ENST00000683085.1:ENST00000682688.1:ENST00000684319.1:ENST00000683577.1:ENST00000682709.1:ENST00000684299.1:ENST00000682133.1:ENST00000682594.1:ENST00000683473.1:ENST00000682106.1:ENST00000683364.1:ENST00000683436.1:ENST00000684220.1:ENST00000683909.1:ENST00000684118.1:ENST00000681981.1:ENST00000682738.1:ENST00000509338.6:ENST00000684717.1:ENST00000682660.1:ENST00000683073.1:ENST00000515216.6:ENST00000684581.1:ENST00000683479.1:ENST00000682464.1:ENST00000684108.1:ENST00000682514.1:ENST00000684017.1:ENST00000684273.1:ENST00000513865.5:ENST00000505648.5:ENST00000508980.5:ENST00000369627.6:ENST00000503491.5:ENST00000508658.6:ENST00000683097.1:ENST00000683541.1:ENST00000683759.1:ENST00000369635.7:ENST00000506182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	24	2	2.2957	3.149775	4.00385	0.0516458	0.0454568	0.176696	0.149888
chr6	116650084	116650182	3197767	0	-	0.438776	(0.408,0.44]	chr6	297846	21	INTRON	INTRON	ZUP1	ENSG00000153975.10	ENST00000368576.8	protein_coding	protein_coding	protein_coding	protein_coding	1	24	2	2.2957	3.149775	4.00385	0.0516458	0.0454568	0.176696	0.149888
chr7	99052104	99052204	3582215	0	-	0.44	(0.408,0.44]	chr7	333664	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	SMURF1	ENSG00000198742.10	ENST00000361368.7:ENST00000361125.1	protein_coding	protein_coding	protein_coding	protein_coding	1	24	2	2.2957	3.149775	4.00385	0.0516458	0.0454568	0.176696	0.149888
chr1	190593	190692	353122	0	-	0.474747	(0.44,0.476]	chr1	40882	13	INTRON	INTRON	WASH9P	ENSG00000279457.4	ENST00000623083.4	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	2	36	2	1.96602	3.14974	4.33346	0.0426807	0.0120349	0.148082	0.0962115
chr1	151255703	151255801	225421	0	+	0.459184	(0.44,0.476]	chr1	25737	5	INTRON	INTRON	PSMD4	ENSG00000159352.16	ENST00000368881.8:ENST00000368884.8:ENST00000461434.1:ENST00000462970.5:ENST00000476855.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	73	2	2.54944	3.1493450000000003	3.74925	0.00591346	4.08974e-4	0.0694038	0.0185763
chr16	69378417	69378516	6508125	0	-	0.474747	(0.44,0.476]	chr16	630123	57	INTRON	INTRON	TERF2	ENSG00000132604.11	ENST00000254942.8:ENST00000566750.5:ENST00000569542.6:ENST00000566257.5:ENST00000569611.6:ENST00000567296.6:ENST00000569280.1:ENST00000567841.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	72	2	2.64669	3.14902	3.65135	0.0040295	6.34922e-4	0.0578376	0.023163
chr15	90993706	90993806	6259656	0	-	0.39	(0.378,0.408]	chr15	597349	73	INTRON	INTRON	PRC1:ENSG00000284946	ENSG00000198901.14:ENSG00000284946.1	ENST00000394249.8:ENST00000361188.9:ENST00000643536.1:ENST00000442656.6:ENST00000647331.1:ENST00000553494.5:ENST00000557763.5:ENST00000417173.6:ENST00000560605.1:ENST00000557905.5:ENST00000555791.5:ENST00000555745.5:ENST00000559811.1:ENST00000556129.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	89	2	2.50099	3.149015	3.79704	0.00245021	3.6912e-4	0.0457892	0.0178272
chr10	125079201	125079301	4713521	0	-	0.61	(0.57,1]	chr10	434897	397	INTRON	INTRON	CTBP2	ENSG00000175029.17	ENST00000337195.9:ENST00000411419.6:ENST00000494626.6:ENST00000531469.5:ENST00000460976.5:ENST00000476817.1:ENST00000530884.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	30	2	2.89463	3.14898	3.40333	0.00788262	9.20604e-4	0.076155	0.0278392
chr11	32896628	32896728	4764749	0	+	0.5	(0.476,0.515]	chr11	440609	29	INTRON	INTRON	QSER1	ENSG00000060749.16	ENST00000650167.2:ENST00000399302.7:ENST00000527250.5	protein_coding	protein_coding	protein_coding	protein_coding	2	53	2	2.99852	3.148955	3.29939	0.0077575	0.00211868	0.0757402	0.0425644
chr4	73182027	73182127	2160058	0	-	0.2	[0,0.28]	chr4	212794	41	INTRON	INTRON	ANKRD17	ENSG00000132466.20	ENST00000358602.9:ENST00000558247.5:ENST00000330838.10:ENST00000509867.6:ENST00000561029.1:ENST00000559367.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	102	2	2.8773	3.14895	3.4206	0.00322364	0.00226728	0.0507087	0.0437013
chr1	64950333	64950433	474383	0	-	0.48	(0.476,0.515]	chr1	57202	636	INTRON	INTRON	JAK1	ENSG00000162434.13	ENST00000342505.5:ENST00000672247.1:ENST00000673046.1:ENST00000672434.1:ENST00000671746.1:ENST00000673254.1:ENST00000673314.1:ENST00000671954.1:ENST00000672179.1:ENST00000673220.1:ENST00000671929.1:ENST00000673502.1:ENST00000672751.1:ENST00000672099.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	53	2	3.05152	3.14891	3.2463	0.0064848	0.00262374	0.0699952	0.0470772
chr16	89471463	89471563	6543411	0	-	0.48	(0.476,0.515]	chr16	634281	398	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	53	2	3.05152	3.14891	3.2463	0.0064848	0.00262374	0.0699952	0.0470772
chr2	235551032	235551132	1041907	0	+	0.55	(0.515,0.57]	chr2	111222	261	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1:ENST00000402604.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	43	2	1.37301	3.14887	4.92473	0.0752392	0.00108255	0.193891	0.0300133
chr9	111900611	111900711	4184489	0	+	0.5	(0.476,0.515]	chr9	381684	29	INTRON	INTRON	UGCG	ENSG00000148154.10	ENST00000374279.4:ENST00000489355.1:ENST00000495085.1:ENST00000490110.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	99	2	1.96437	3.14887	4.33337	0.0124351	1.10019e-5	0.0920366	0.00244462
chr10	21549623	21549722	4404563	0	+	0.414141	(0.408,0.44]	chr10	406427	79	INTRON	INTRON	MLLT10	ENSG00000078403.17	ENST00000651097.1:ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000377100.8:ENST00000377091.7:ENST00000650772.1:ENST00000651298.1:ENST00000652497.1:ENST00000495130.5:ENST00000377059.7:ENST00000621220.4:ENST00000476557.5:ENST00000462999.5:ENST00000430455.2:ENST00000479634.1:ENST00000480415.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	86	2	2.7371	3.148835	3.56057	9.67143e-4	7.83328e-4	0.0282401	0.0257505
chr16	8805043	8805143	6284728	0	+	0.5	(0.476,0.515]	chr16	601825	2	SS5_PROX	SS5_PROX:INTRON	PMM2	ENSG00000140650.13	ENST00000566983.5:ENST00000682008.1:ENST00000683435.1:ENST00000564030.5:ENST00000683094.1:ENST00000566604.5:ENST00000570134.5:ENST00000268261.9:ENST00000683274.1:ENST00000682393.1:ENST00000566540.5:ENST00000562318.5:ENST00000565896.5:ENST00000568602.5:ENST00000562448.1:ENST00000570076.5:ENST00000569958.5:ENST00000565221.5:ENST00000564069.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	55	2	2.63168	3.148665	3.66565	0.0237106	4.18031e-4	0.118716	0.0182827
chr3	195950161	195950258	1896603	0	-	0.57732000000000006	(0.57,1]	chr3	189779	11	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	ENSG00000260261	ENSG00000260261.2	ENST00000607976.2:ENST00000641484.1:ENST00000570130.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	2	30	2	3.02967	3.1486349999999996	3.2676	0.00471306	0.00176203	0.0631419	0.0376652
chr2	96635742	96635839	1181174	0	-	0.546392	(0.515,0.57]	chr2	126526	12	INTRON	INTRON	KANSL3	ENSG00000114982.19	ENST00000354204.10:ENST00000431828.6:ENST00000487070.5:ENST00000420155.5:ENST00000670907.1:ENST00000666923.1:ENST00000597150.5:ENST00000444759.5:ENST00000452268.5:ENST00000425656.5:ENST00000448075.1:ENST00000451819.5:ENST00000416138.1:ENST00000418735.1:ENST00000475820.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	82	2	3.0958	3.148605	3.20141	5.63557e-4	2.65803e-4	0.0219303	0.0144243
chr1	227113812	227113912	649661	0	-	0.37	(0.35,0.378]	chr1	77036	5	INTRON	INTRON	CDC42BPA	ENSG00000143776.20	ENST00000366766.8:ENST00000366769.7:ENST00000334218.9:ENST00000366767.7:ENST00000366764.8	protein_coding	protein_coding	protein_coding	protein_coding	2	34	2	1.90405	3.14854	4.39303	0.0482651	0.0237246	0.171852	0.118716
chr19	21743723	21743819	7159061	0	-	0.354167	(0.35,0.378]	chr19	723711	1	SS5_PROX	SS5_PROX:INTRON	ZNF100	ENSG00000197020.12	ENST00000358296.11:ENST00000305570.10:ENST00000594401.1:ENST00000598026.1	protein_coding	protein_coding	protein_coding	protein_coding	2	34	2	1.90405	3.14854	4.39303	0.0482651	0.0237246	0.171852	0.118716
chr6	117691344	117691444	2946957	0	+	0.36	(0.35,0.378]	chr6	277395	149	INTRON	INTRON	NUS1	ENSG00000153989.8	ENST00000368494.4	protein_coding	protein_coding	protein_coding	protein_coding	2	34	2	1.90405	3.14854	4.39303	0.0482651	0.0237246	0.171852	0.118716
chr11	584868	584967	4719657	0	+	0.50505	(0.476,0.515]	chr11	436170	24	INTRON	INTRON	PHRF1	ENSG00000070047.13	ENST00000264555.10:ENST00000416188.3:ENST00000534320.5:ENST00000413872.6:ENST00000533464.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	95	2	3.0883	3.148255	3.20821	7.31567e-4	3.05489e-4	0.0248722	0.0155972
chr12	121327329	121327428	5436924	0	-	0.555556	(0.515,0.57]	chr12	519876	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	ANAPC5	ENSG00000089053.13	ENST00000261819.8:ENST00000535641.5:ENST00000541887.5:ENST00000534976.5:ENST00000441917.6:ENST00000539079.5:ENST00000544314.5:ENST00000535482.1:ENST00000545218.5:ENST00000535472.5:ENST00000538334.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	45	2	1.38719	3.148155	4.90912	0.0540435	0.0021669	0.181713	0.0417866
chr19	48902104	48902201	7087787	0	+	0.546392	(0.515,0.57]	chr19	709331	6	INTRON	INTRON	NUCB1	ENSG00000104805.16	ENST00000405315.9:ENST00000407032.5:ENST00000452087.5:ENST00000485798.5:ENST00000443560.1:ENST00000411700.5:ENST00000451312.5:ENST00000424608.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	45	2	1.38719	3.148155	4.90912	0.0540435	0.0021669	0.181713	0.0417866
chrX	302277	302375	7605481	0	+	0.591837	(0.57,1]	chrX	779420	31	UTR3	UTR3:EXON_MRNA	PLCXD1	ENSG00000182378.15	ENST00000399012.6:ENST00000381657.8	protein_coding	protein_coding	protein_coding	protein_coding	9	104	2	3.08891	3.1481149999999998	3.20732	7.2255e-6	5.9886e-6	0.00190659	0.00183779
chr13	28141086	28141186	5460854	0	+	0.51	(0.476,0.515]	chr13	523235	16	INTRON	INTRON	PAN3	ENSG00000152520.14	ENST00000503791.5:ENST00000380958.8:ENST00000399613.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	35	2	1.86492	3.147925	4.43093	0.0550347	0.00931369	0.165463	0.0855292
chr17	32482323	32482423	6598738	0	+	0.34	(0.32,0.35]	chr17	642028	18	UTR3	UTR3:EXON_MRNA	PSMD11	ENSG00000108671.11	ENST00000649012.1:ENST00000261712.8	protein_coding	protein_coding	protein_coding	protein_coding	2	62	2	2.79707	3.14788	3.49869	0.0170923	0.00108004	0.104099	0.0300133
chr11	74198541	74198640	4826794	0	+	0.444444	(0.44,0.476]	chr11	450450	267	INTRON	INTRON	PPME1	ENSG00000214517.10	ENST00000542710.3:ENST00000328257.13:ENST00000398427.6:ENST00000544401.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	27	2	2.46135	3.147875	3.8344	0.041276	0.0374637	0.161534	0.140008
chr16	57155806	57155906	6492790	0	-	0.46	(0.44,0.476]	chr16	627929	9	INTRON	INTRON	PSME3IP1	ENSG00000172775.17	ENST00000309137.13:ENST00000566403.5:ENST00000389447.9:ENST00000565956.5:ENST00000566077.5:ENST00000569266.5:ENST00000567439.5:ENST00000564108.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	27	2	2.46135	3.147875	3.8344	0.041276	0.0374637	0.161534	0.140008
chr8	52626848	52626945	3950205	0	-	0.474227	(0.44,0.476]	chr8	362272	17	INTRON	INTRON	RB1CC1	ENSG00000023287.13	ENST00000025008.10:ENST00000435644.6:ENST00000521611.1:ENST00000519912.1:ENST00000522957.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	27	2	2.46135	3.147875	3.8344	0.041276	0.0374637	0.161534	0.140008
chr9	120825283	120825381	4335572	0	-	0.326531	(0.32,0.35]	chr9	398292	2	INTRON	INTRON	PSMD5	ENSG00000095261.14	ENST00000210313.8:ENST00000373904.5:ENST00000373903.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	56	2	1.46273	3.1478	4.83287	0.0451962	0.0095071	0.163755	0.0817766
chr16	3779117	3779217	6435059	0	-	0.46	(0.44,0.476]	chr16	619525	3	SS3_PROX	SS3_PROX:INTRON	CREBBP	ENSG00000005339.15	ENST00000262367.10:ENST00000382070.7:ENST00000570939.2:ENST00000572134.1	protein_coding	protein_coding	protein_coding	protein_coding	3	71	2	2.94321	3.1477399999999998	3.35227	0.0022005699999999998	0.00111162	0.0417893	0.0305384
chr16	24052730	24052829	6325933	0	+	0.414141	(0.408,0.44]	chr16	605723	168	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000498739.1:ENST00000647422.1:ENST00000486868.1:ENST00000482000.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	39	2	1.69566	3.147725	4.59979	0.0453922	0.0109537	0.164236	0.0873034
chr6	34678952	34679052	3086042	0	-	0.43	(0.408,0.44]	chr6	288696	71	INTRON	INTRON	ILRUN	ENSG00000196821.10	ENST00000374026.7:ENST00000374023.8	protein_coding	protein_coding	protein_coding	protein_coding	3	39	2	1.69566	3.147725	4.59979	0.0453922	0.0109537	0.164236	0.0873034
chr5	131790914	131791014	2720684	0	-	0.37	(0.35,0.378]	chr5	255730	459	INTRON	INTRON	FNIP1	ENSG00000217128.13	ENST00000510461.6:ENST00000307954.12:ENST00000307968.11:ENST00000511848.1	protein_coding	protein_coding	protein_coding	protein_coding	3	41	2	1.65083	3.1477	4.64457	0.0521072	0.012652	0.177022	0.0926667
chr7	73695726	73695823	3331698	0	+	0.360825	(0.35,0.378]	chr7	309907	14	EXON_MRNA	EXON_MRNA:INTRON	BUD23	ENSG00000071462.12	ENST00000421744.5:ENST00000265758.7:ENST00000436944.5:ENST00000463307.5:ENST00000423497.5:ENST00000430270.5:ENST00000430446.2:ENST00000442099.1:ENST00000453316.1:ENST00000471215.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	41	2	1.65083	3.1477	4.64457	0.0521072	0.012652	0.177022	0.0926667
chr7	72997431	72997524	3554091	0	-	0.451613	(0.44,0.476]	chr7	330647	5	EXON_LNCRNA	EXON_LNCRNA:INTRON	STAG3L3	ENSG00000174353.17	ENST00000436857.5:ENST00000428423.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	3	71	2	2.82351	3.1476550000000003	3.4718	0.00191049	0.00136358	0.0403772	0.0336321
chr5	10364739	10364838	2317757	0	+	0.353535	(0.35,0.378]	chr5	224612	97	INTRON	INTRON	MARCHF6	ENSG00000145495.16	ENST00000274140.10:ENST00000449913.6:ENST00000502795.5:ENST00000511802.5:ENST00000503788.5:ENST00000640713.1:ENST00000510872.5:ENST00000507863.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	107	2	2.63153	3.14765	3.66377	0.00562761	2.72463e-5	0.0653997	0.00412617
chr22	47908548	47908648	7542154	0	+	0.58	(0.57,1]	chr22	770801	440	INTRON	INTRON	ENSG00000224271	ENSG00000224271.7	ENST00000664761.1:ENST00000650683.1:ENST00000651536.1:ENST00000651445.1:ENST00000650660.1:ENST00000651403.1:ENST00000652228.1:ENST00000651124.1:ENST00000651003.1:ENST00000651939.1:ENST00000652080.1:ENST00000651033.1:ENST00000651584.1	lncRNA	lncRNA	lncRNA	lncRNA	7	83	2	3.11171	3.147615	3.18352	3.76713e-5	1.56095e-5	0.00491469	0.0031803
chr14	34792374	34792474	5867601	0	-	0.35	(0.32,0.35]	chr14	557345	2	SS5_PROX	SS5_PROX:INTRON	BAZ1A	ENSG00000198604.11	ENST00000358716.8:ENST00000360310.6:ENST00000382422.6	protein_coding	protein_coding	protein_coding	protein_coding	2	62	2	3.13277	3.14757	3.16237	0.00550276	0.00458313	0.0648867	0.0622676
chr1	93123173	93123271	162991	0	+	0.295918	(0.28,0.32]	chr1	17612	19	INTRON	INTRON	MTF2	ENSG00000143033.18	ENST00000540243.5:ENST00000545708.5:ENST00000370298.9:ENST00000471953.5:ENST00000370303.4:ENST00000467953.5:ENST00000497976.5:ENST00000476037.5:ENST00000487263.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	109	2	2.41625	3.14752	3.87879	0.00419958	4.20566e-4	0.0592209	0.0189827
chr15	57004382	57004482	6032970	0	+	0.49	(0.476,0.515]	chr15	574669	26	INTRON	INTRON	TCF12	ENSG00000140262.18	ENST00000438423.6:ENST00000267811.9:ENST00000333725.10:ENST00000560190.5:ENST00000559609.5:ENST00000558908.5:ENST00000557843.5:ENST00000557947.5:ENST00000561152.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	72	2	2.58615	3.1474849999999996	3.70882	0.00515536	4.74495e-4	0.0650394	0.0201638
chr7	66530774	66530873	3539490	0	-	0.515152	(0.476,0.515]	chr7	330225	48	EXON_LNCRNA	EXON_LNCRNA	RABGEF1P1	ENSG00000229180.8	ENST00000449307.3:ENST00000639011.1:ENST00000692299.1:ENST00000686269.1:ENST00000649635.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	3	72	2	2.58615	3.1474849999999996	3.70882	0.00515536	4.74495e-4	0.0650394	0.0201638
chr1	91841897	91841997	504177	0	-	0.5	(0.476,0.515]	chr1	59635	405	INTRON	INTRON	TGFBR3	ENSG00000069702.11	ENST00000212355.9:ENST00000533089.5:ENST00000370399.6:ENST00000525962.5:ENST00000532540.5:ENST00000465892.6:ENST00000417833.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	26	2	2.3223	3.1471549999999997	3.97201	0.0519312	0.030904	0.159306	0.143385
chr11	108731037	108731137	4859305	0	+	0.49	(0.476,0.515]	chr11	453500	1	SS3_PROX	SS3_PROX:INTRON	DDX10	ENSG00000178105.12	ENST00000693015.1:ENST00000690021.1:ENST00000686283.1:ENST00000322536.8:ENST00000648124.1:ENST00000688583.1:ENST00000688536.1:ENST00000686617.1:ENST00000688976.1:ENST00000687072.1:ENST00000526794.1:ENST00000692839.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	26	2	2.3223	3.1471549999999997	3.97201	0.0519312	0.030904	0.159306	0.143385
chr19	36544994	36545091	7174613	0	-	0.494845	(0.476,0.515]	chr19	725059	13	UTR3	UTR3:EXON_MRNA:INTRON	ZNF529	ENSG00000186020.13	ENST00000452073.2:ENST00000591340.6:ENST00000590656.1:ENST00000334116.7	protein_coding	protein_coding	protein_coding	protein_coding	1	26	2	2.3223	3.1471549999999997	3.97201	0.0519312	0.030904	0.159306	0.143385
chr19	52089302	52089402	7205804	0	-	0.49	(0.476,0.515]	chr19	731309	3	SS3_PROX	SS3_PROX:INTRON	ZNF432:ZNF841	ENSG00000256087.7:ENSG00000197608.12	ENST00000598446.1:ENST00000594440.6:ENST00000426391.6:ENST00000594295.5:ENST00000599430.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	26	2	2.3223	3.1471549999999997	3.97201	0.0519312	0.030904	0.159306	0.143385
chr2	10643919	10644019	1065938	0	-	0.5	(0.476,0.515]	chr2	113731	2	SS5_PROX	SS5_PROX:INTRON	NOL10	ENSG00000115761.17	ENST00000695464.1:ENST00000695470.1:ENST00000695467.1:ENST00000695468.1:ENST00000695469.1:ENST00000695466.1:ENST00000381685.10:ENST00000695471.1:ENST00000345985.7:ENST00000538384.5:ENST00000695472.1:ENST00000695473.1:ENST00000695475.1:ENST00000695476.1:ENST00000695477.1:ENST00000695478.1:ENST00000695479.1:ENST00000431319.2:ENST00000695480.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	26	2	2.3223	3.1471549999999997	3.97201	0.0519312	0.030904	0.159306	0.143385
chr2	85007936	85008036	820631	0	+	0.48	(0.476,0.515]	chr2	91419	353	INTRON	INTRON	KCMF1	ENSG00000176407.18	ENST00000456682.1:ENST00000409785.9:ENST00000428691.5:ENST00000453448.1	protein_coding	protein_coding	protein_coding	protein_coding	1	26	2	2.3223	3.1471549999999997	3.97201	0.0519312	0.030904	0.159306	0.143385
chr22	36381307	36381407	7585402	0	-	0.48	(0.476,0.515]	chr22	776241	108	INTRON	INTRON	MYH9	ENSG00000100345.23	ENST00000216181.11:ENST00000685801.1:ENST00000692930.1:ENST00000685187.1:ENST00000691687.1:ENST00000685191.1:ENST00000691296.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	26	2	2.3223	3.1471549999999997	3.97201	0.0519312	0.030904	0.159306	0.143385
chr3	186984825	186984924	1586721	0	+	0.50505	(0.476,0.515]	chr3	164336	94	INTRON	INTRON	ST6GAL1	ENSG00000073849.16	ENST00000676786.1:ENST00000169298.8:ENST00000457772.6:ENST00000455441.5:ENST00000427315.5:ENST00000677292.1:ENST00000458216.5:ENST00000430309.5:ENST00000417392.5:ENST00000438590.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	26	2	2.3223	3.1471549999999997	3.97201	0.0519312	0.030904	0.159306	0.143385
chr7	74470749	74470849	3333824	0	+	0.51	(0.476,0.515]	chr7	310175	162	INTRON	INTRON	GTF2IRD1	ENSG00000006704.11	ENST00000265755.7:ENST00000424337.7:ENST00000455841.6	protein_coding	protein_coding	protein_coding	protein_coding	1	26	2	2.3223	3.1471549999999997	3.97201	0.0519312	0.030904	0.159306	0.143385
chr9	124945306	124945406	4349977	0	-	0.51	(0.476,0.515]	chr9	399421	28	UTR3	UTR3:EXON_MRNA:INTRON	GOLGA1:SCAI	ENSG00000136935.14:ENSG00000173611.18	ENST00000421514.1:ENST00000336505.11	protein_coding	protein_coding	protein_coding	protein_coding	1	26	2	2.3223	3.1471549999999997	3.97201	0.0519312	0.030904	0.159306	0.143385
chr9	136232743	136232843	4373794	0	-	0.49	(0.476,0.515]	chr9	402670	55	INTRON	INTRON	QSOX2	ENSG00000165661.17	ENST00000358701.10	protein_coding	protein_coding	protein_coding	protein_coding	1	26	2	2.3223	3.1471549999999997	3.97201	0.0519312	0.030904	0.159306	0.143385
chr8	53998745	53998845	3953064	0	-	0.37	(0.35,0.378]	chr8	362546	46	INTRON	INTRON	TCEA1	ENSG00000187735.15	ENST00000396401.7:ENST00000521604.7:ENST00000521086.6:ENST00000522635.5:ENST00000522397.5:ENST00000640382.1:ENST00000640041.1:ENST00000520534.5:ENST00000518310.5:ENST00000517351.5:ENST00000521836.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	79	2	3.08431	3.1471400000000003	3.20997	0.0065853	3.32797e-4	0.0701901	0.0162254
chr8	52706698	52706798	3951031	0	-	0.44	(0.408,0.44]	chr8	362390	194	INTRON	INTRON	RB1CC1	ENSG00000023287.13	ENST00000025008.10:ENST00000435644.6:ENST00000521611.1:ENST00000518710.5:ENST00000517963.1:ENST00000518211.1:ENST00000518468.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	139	2	2.8411	3.147135	3.45317	6.58235e-4	1.27095e-5	0.0234118	0.00265846
chr11	57304950	57305048	4952687	0	-	0.612245	(0.57,1]	chr11	464753	16	INTRON	INTRON	TNKS1BP1	ENSG00000149115.14	ENST00000528882.5:ENST00000358252.8:ENST00000532437.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	70	2	2.88713	3.147095	3.40706	7.53251e-5	5.92509e-5	0.00777227	0.00631599
chr2	28895353	28895453	725181	0	+	0.63	(0.57,1]	chr2	83775	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	WDR43	ENSG00000163811.12	ENST00000407426.8:ENST00000434238.1	protein_coding	protein_coding	protein_coding	protein_coding	2	31	2	2.79889	3.14703	3.49517	0.0110274	6.03609e-4	0.0927187	0.0226059
chr1	25822115	25822214	49161	0	+	0.414141	(0.408,0.44]	chr1	6114	7	UTR5	UTR5:EXON_MRNA:INTRON	MTFR1L	ENSG00000117640.18	ENST00000424294.5:ENST00000533762.5:ENST00000474295.5:ENST00000529116.5:ENST00000488327.6:ENST00000472643.5:ENST00000374303.7:ENST00000494293.1:ENST00000469815.5:ENST00000526894.5:ENST00000478284.5:ENST00000524618.5:ENST00000374307.9:ENST00000528624.5:ENST00000374301.7:ENST00000525713.5:ENST00000464008.6:ENST00000526158.5:ENST00000530599.5:ENST00000374300.7:ENST00000466284.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	26	2	2.18807	3.147005	4.10594	0.0708044	0.0219367	0.184528	0.123836
chr16	75057770	75057870	6390007	0	+	0.44	(0.408,0.44]	chr16	614488	105	INTRON	INTRON	ZNRF1	ENSG00000186187.12	ENST00000335325.9:ENST00000320619.10:ENST00000567962.5:ENST00000566250.5:ENST00000564320.1:ENST00000568511.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	26	2	2.18807	3.147005	4.10594	0.0708044	0.0219367	0.184528	0.123836
chr22	41471587	41471686	7523560	0	+	0.434343	(0.408,0.44]	chr22	768926	17	INTRON	INTRON	ACO2	ENSG00000100412.17	ENST00000676748.1:ENST00000677554.1:ENST00000679320.1:ENST00000678600.1:ENST00000678394.1:ENST00000676792.1:ENST00000678688.1:ENST00000677516.1:ENST00000678788.1:ENST00000677007.1:ENST00000676959.1:ENST00000679311.1:ENST00000216254.9:ENST00000676714.1:ENST00000466237.2:ENST00000677427.1:ENST00000678454.1:ENST00000677153.1:ENST00000678819.1:ENST00000396512.3:ENST00000678269.1:ENST00000677532.1:ENST00000471094.1:ENST00000679264.1:ENST00000677698.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	26	2	2.18807	3.147005	4.10594	0.0708044	0.0219367	0.184528	0.123836
chr8	55813916	55814016	3754207	0	+	0.41	(0.408,0.44]	chr8	349240	4	INTRON	INTRON	TGS1	ENSG00000137574.11	ENST00000260129.6:ENST00000523948.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	26	2	2.18807	3.147005	4.10594	0.0708044	0.0219367	0.184528	0.123836
chrX	24782645	24782745	7632604	0	+	0.42	(0.408,0.44]	chrX	781731	69	INTRON	INTRON	POLA1	ENSG00000101868.13	ENST00000672178.1:ENST00000379068.8:ENST00000379059.7:ENST00000611764.2:ENST00000480125.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	26	2	2.18807	3.147005	4.10594	0.0708044	0.0219367	0.184528	0.123836
chr17	75230188	75230281	6674525	0	+	0.516129	(0.515,0.57]	chr17	651408	7	INTRON	INTRON	NUP85	ENSG00000125450.11	ENST00000245544.9:ENST00000579324.5:ENST00000581104.5:ENST00000579298.5:ENST00000578830.5:ENST00000579557.5:ENST00000577645.5:ENST00000583070.5:ENST00000580879.5:ENST00000540768.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	62	2	2.763	3.146925	3.53085	0.00257143	6.59951e-4	0.045134	0.0232396
chr22	37851661	37851761	7511712	0	+	0.52	(0.515,0.57]	chr22	767166	1	SS5_PROX	SS5_PROX:INTRON	EIF3L	ENSG00000100129.18	ENST00000412331.6:ENST00000624234.3:ENST00000439997.5:ENST00000381683.10:ENST00000476955.5:ENST00000652021.1:ENST00000436452.6:ENST00000414316.5:ENST00000477256.5:ENST00000406934.5:ENST00000451427.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	62	2	2.763	3.146925	3.53085	0.00257143	6.59951e-4	0.045134	0.0232396
chr4	70825727	70825826	2155676	0	-	0.515152	(0.476,0.515]	chr4	212369	4	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GRSF1	ENSG00000132463.15	ENST00000254799.11:ENST00000505068.5:ENST00000499044.6:ENST00000502323.5:ENST00000514161.5:ENST00000506453.1:ENST00000508091.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	53	2	3.10264	3.146915	3.19119	0.00543163	0.00325748	0.0645052	0.0524329
chr22	19066401	19066500	7551452	0	-	0.30303	(0.28,0.32]	chr22	771891	6	INTRON	INTRON	DGCR2	ENSG00000070413.20	ENST00000537045.5:ENST00000545799.5:ENST00000263196.12:ENST00000389262.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	71	2	2.80157	3.146775	3.49198	0.0147132	0.00195595	0.106558	0.0400756
chr22	38487112	38487199	7587887	0	-	0.586207	(0.57,1]	chr22	776716	3	INTRON	INTRON	DDX17	ENSG00000100201.23	ENST00000403230.3:ENST00000396821.8:ENST00000431312.2:ENST00000216019.11	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	63	2	2.66199	3.1466149999999997	3.63124	2.87208e-4	1.30577e-4	0.0150568	0.0103941
chr17	27458070	27458170	6580781	0	+	0.35	(0.32,0.35]	chr17	639655	8	INTRON	INTRON	KSR1	ENSG00000141068.15	ENST00000644974.2:ENST00000579309.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	43	2	1.67393	3.1464100000000004	4.61889	0.0496128	0.0166646	0.174685	0.102621
chr12	57425233	57425333	5339201	0	-	0.34	(0.32,0.35]	chr12	510716	291	INTRON	INTRON	R3HDM2	ENSG00000179912.21	ENST00000402412.6:ENST00000347140.7:ENST00000634871.1:ENST00000448732.1	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	2.37794	3.1464	3.91486	0.0498601	0.0450361	0.163255	0.156383
chr3	99856734	99856834	1462289	0	+	0.34	(0.32,0.35]	chr3	153488	383	INTRON	INTRON	CMSS1	ENSG00000184220.12	ENST00000463526.1:ENST00000421999.8:ENST00000491299.5:ENST00000496116.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	30	2	2.37794	3.1464	3.91486	0.0498601	0.0450361	0.163255	0.156383
chr2	173959700	173959799	1269015	0	-	0.414141	(0.408,0.44]	chr2	134219	31	INTRON	INTRON	SP3	ENSG00000172845.18	ENST00000310015.12:ENST00000416195.1:ENST00000418194.7:ENST00000652005.2:ENST00000462904.1:ENST00000483084.1:ENST00000490182.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	86	2	2.76768	3.1461949999999996	3.52471	0.00112428	6.71664e-4	0.0306963	0.0235155
chr1	28746780	28746880	58446	0	+	0.55	(0.515,0.57]	chr1	7605	24	INTRON	INTRON	YTHDF2	ENSG00000198492.16	ENST00000542507.5:ENST00000373812.8:ENST00000541996.5:ENST00000478283.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	31	2	1.79136	3.14619	4.50102	0.0638444	0.00510768	0.177811	0.0646039
chr1	172388154	172388253	585443	0	-	0.535354	(0.515,0.57]	chr1	70530	8	INTRON	INTRON	PIGC	ENSG00000135845.10	ENST00000489002.5:ENST00000475059.5	protein_coding	processed_transcript	protein_coding	processed_transcript	2	31	2	1.79136	3.14619	4.50102	0.0638444	0.00510768	0.177811	0.0646039
chr4	165329798	165329896	2079651	0	+	0.44898	(0.44,0.476]	chr4	205560	13	INTRON	INTRON	MSMO1	ENSG00000052802.13	ENST00000507013.5:ENST00000261507.11:ENST00000393766.6:ENST00000504317.1:ENST00000505270.1	protein_coding	protein_coding	protein_coding	protein_coding	6	131	2	2.99453	3.14619	3.29785	2.77287e-4	6.59756e-5	0.0152764	0.00672159
chr6	89804951	89805050	3161891	0	-	0.545455	(0.515,0.57]	chr6	294886	10	INTRON	INTRON	MDN1	ENSG00000112159.12	ENST00000369393.8:ENST00000629399.2:ENST00000439638.1	protein_coding	protein_coding	protein_coding	protein_coding	2	31	2	1.79136	3.14619	4.50102	0.0638444	0.00510768	0.177811	0.0646039
chr7	152321921	152322021	3680148	0	-	0.38	(0.378,0.408]	chr7	341641	62	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000684262.1:ENST00000682301.1:ENST00000452749.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	113	2	2.46651	3.1461300000000003	3.82575	6.45662e-4	3.23711e-4	0.023017	0.0165891
chr3	39411382	39411471	1401835	0	+	0.348315	(0.32,0.35]	chr3	147224	3	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPSA	ENSG00000168028.14	ENST00000301821.11:ENST00000458478.5:ENST00000443003.2:ENST00000478027.2:ENST00000495394.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	9	253	2	2.92346	3.1460999999999997	3.36874	1.34386e-4	1.10751e-5	0.0099912	0.00263461
chr3	139350415	139350508	1518892	0	+	0.419355	(0.408,0.44]	chr3	158551	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MRPS22	ENSG00000175110.14	ENST00000495075.5:ENST00000687538.1:ENST00000688697.1:ENST00000684961.1:ENST00000693155.1:ENST00000692727.1:ENST00000492644.2:ENST00000686433.1:ENST00000690298.1:ENST00000310776.9:ENST00000680020.1:ENST00000480644.2:ENST00000498505.5:ENST00000691070.1:ENST00000480938.5:ENST00000466690.5:ENST00000689286.1:ENST00000478464.6:ENST00000689925.1:ENST00000483545.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	86	2	2.5027	3.146035	3.78937	0.00238178	3.51772e-4	0.0449397	0.0174637
chr22	29284937	29285036	7496233	0	+	0.454545	(0.44,0.476]	chr22	764824	20	INTRON	INTRON	EWSR1	ENSG00000182944.18	ENST00000629659.2:ENST00000332050.10:ENST00000397938.7:ENST00000406548.5:ENST00000437155.6:ENST00000415761.5:ENST00000331029.11:ENST00000483415.5:ENST00000414183.6:ENST00000333395.10:ENST00000332035.10:ENST00000455726.5:ENST00000479135.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	57	2	2.46135	3.146025	3.8307	0.0374637	1.81621e-4	0.140008	0.0117212
chr2	3516474	3516572	1059935	0	-	0.387755	(0.378,0.408]	chr2	112951	17	UTR5	UTR5:EXON_MRNA:INTRON	ADI1	ENSG00000182551.14	ENST00000327435.11:ENST00000382093.5	protein_coding	protein_coding	protein_coding	protein_coding	2	56	2	2.72993	3.1460049999999997	3.56208	0.0188736	6.94246e-4	0.108861	0.0240761
chr1	160219358	160219455	571161	0	-	0.402062	(0.378,0.408]	chr1	69110	5	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	DCAF8	ENSG00000132716.19	ENST00000326837.6:ENST00000368073.7:ENST00000368074.6:ENST00000477163.1:ENST00000461888.5:ENST00000490368.5:ENST00000497354.1:ENST00000481831.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	119	2	3.14435	3.145905	3.14746	6.4029e-4	8.84383e-5	0.0231685	0.00791674
chr3	23838790	23838890	1388058	0	+	0.25	[0,0.28]	chr3	145385	269	INTRON	INTRON	UBE2E1	ENSG00000170142.12	ENST00000306627.8:ENST00000346855.7:ENST00000495141.5:ENST00000442670.5:ENST00000424381.5:ENST00000467766.5:ENST00000475680.5:ENST00000452012.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	35	2	2.33055	3.145885	3.96122	0.062338	0.0617993	0.193423	0.175343
chr1	229265637	229265737	652334	0	-	0.44	(0.408,0.44]	chr1	77229	18	EXON_LNCRNA	EXON_LNCRNA:INTRON	ENSG00000177788	ENSG00000177788.7	ENST00000654028.1:ENST00000653511.1:ENST00000656366.1:ENST00000429227.1:ENST00000660017.1	lncRNA	lncRNA	lncRNA	lncRNA	5	100	2	2.28817	3.14578	4.00339	0.00358507	7.25052e-5	0.0533855	0.00709818
chr16	28203194	28203294	6468378	0	-	0.48	(0.476,0.515]	chr16	624597	218	INTRON	INTRON	XPO6	ENSG00000169180.12	ENST00000304658.10:ENST00000565698.5:ENST00000569951.1:ENST00000566073.1	protein_coding	protein_coding	protein_coding	protein_coding	10	145	2	1.54095	3.14569	4.75043	0.0160476	7.32041e-7	0.101453	4.77393e-4
chr3	10095847	10095942	1362926	0	+	0.410526	(0.408,0.44]	chr3	143631	7	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	FANCD2	ENSG00000144554.13	ENST00000287647.7:ENST00000676013.1:ENST00000675286.1:ENST00000419585.5:ENST00000681997.1:ENST00000683263.1:ENST00000421731.5:ENST00000683933.1:ENST00000683312.1:ENST00000470028.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	160	2	2.99708	3.145645	3.29421	1.13088e-4	3.47956e-5	0.00956778	0.00469546
chr11	110263859	110263959	5041002	0	-	0.28	[0,0.28]	chr11	474720	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RDX	ENSG00000137710.17	ENST00000645527.1:ENST00000530749.5:ENST00000528498.5:ENST00000528900.5:ENST00000530301.5:ENST00000647231.1:ENST00000646663.1:ENST00000645495.2:ENST00000544551.5:ENST00000530131.5:ENST00000534683.1:ENST00000642511.1:ENST00000532118.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	58	2	1.53147	3.145555	4.75964	0.0533898	0.0232081	0.179876	0.118148
chr10	923083	923183	4542501	0	-	0.4	(0.378,0.408]	chr10	419304	197	INTRON	INTRON	LARP4B	ENSG00000107929.16	ENST00000316157.8:ENST00000690516.1:ENST00000476529.5:ENST00000406525.6:ENST00000481118.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	56	2	3.05393	3.145505	3.23708	0.00551532	0.00365053	0.0672816	0.0535094
chr1	176075961	176076060	590388	0	-	0.393939	(0.378,0.408]	chr1	70908	293	INTRON	INTRON	COP1	ENSG00000143207.21	ENST00000367669.8:ENST00000367667.5:ENST00000461830.6:ENST00000367666.5:ENST00000649803.1:ENST00000308769.12:ENST00000459744.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	74	2	3.05389	3.145485	3.23708	0.00365053	6.75567e-4	0.0535094	0.0236067
chr19	40454053	40454151	7184463	0	-	0.469388	(0.44,0.476]	chr19	726746	22	INTRON	INTRON	BLVRB	ENSG00000090013.11	ENST00000643519.1:ENST00000263368.9:ENST00000595483.5:ENST00000643596.1:ENST00000601346.5:ENST00000597870.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	71	2	2.78129	3.145415	3.50954	0.00229634	0.00116647	0.0439319	0.0312127
chr6	17940020	17940119	3068076	0	-	0.363636	(0.35,0.378]	chr6	285100	415	INTRON	INTRON	KIF13A	ENSG00000137177.20	ENST00000378814.9:ENST00000259711.11:ENST00000378826.6:ENST00000378843.6:ENST00000636847.1:ENST00000507576.1:ENST00000505588.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	104	2	2.91317	3.14539	3.37761	0.00189062	1.38324e-4	0.0392053	0.0101276
chr7	155306165	155306264	3451849	0	+	0.535354	(0.515,0.57]	chr7	322633	19	INTRON	INTRON	INSIG1	ENSG00000186480.13	ENST00000344756.8:ENST00000340368.9:ENST00000342407.5:ENST00000476756.1	protein_coding	protein_coding	protein_coding	protein_coding	11	169	2	2.31853	3.145375	3.97222	2.873e-4	2.13673e-6	0.0155964	9.07669e-4
chr1	171537873	171537973	253754	0	+	0.44	(0.408,0.44]	chr1	30173	4	SS5_PROX	SS5_PROX:INTRON	PRRC2C	ENSG00000117523.18	ENST00000647382.2:ENST00000367742.7:ENST00000338920.8:ENST00000426496.6	protein_coding	protein_coding	protein_coding	protein_coding	2	55	2	2.96007	3.1453699999999998	3.33067	0.00753901	0.0024459	0.0773151	0.0445752
chr1	1473684	1473784	1584	0	+	0.6	(0.57,1]	chr1	364	12	INTRON	INTRON	ATAD3B	ENSG00000160072.20	ENST00000673477.1:ENST00000308647.8	protein_coding	protein_coding	protein_coding	protein_coding	2	21	2	1.91937	3.145365	4.37136	0.0468438	0.00345135	0.167716	0.0517761
chr12	123233564	123233654	5242295	0	+	0.677778	(0.57,1]	chr12	498144	3	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MTRFR	ENSG00000130921.9	ENST00000425637.3:ENST00000253233.6:ENST00000680325.1:ENST00000538888.6:ENST00000366329.7:ENST00000546132.2:ENST00000536130.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	21	2	1.91937	3.145365	4.37136	0.0468438	0.00345135	0.167716	0.0517761
chr2	235812026	235812126	1044530	0	+	0.63	(0.57,1]	chr2	111284	43	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1:ENST00000409538.5:ENST00000614409.4:ENST00000619456.4:ENST00000428334.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	21	2	1.91937	3.145365	4.37136	0.0468438	0.00345135	0.167716	0.0517761
chr5	145779987	145780087	2746085	0	-	0.58	(0.57,1]	chr5	258689	146	INTRON	INTRON	PRELID2	ENSG00000186314.12	ENST00000510594.1:ENST00000683046.1:ENST00000334744.8:ENST00000394450.6:ENST00000505416.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	21	2	1.91937	3.145365	4.37136	0.0468438	0.00345135	0.167716	0.0517761
chr6	43180058	43180155	2869857	0	+	0.649485	(0.57,1]	chr6	271845	10	UTR3	UTR3:EXON_MRNA	SRF	ENSG00000112658.8	ENST00000265354.6	protein_coding	protein_coding	protein_coding	protein_coding	2	21	2	1.91937	3.145365	4.37136	0.0468438	0.00345135	0.167716	0.0517761
chr7	10653836	10653936	3483318	0	-	0.63	(0.57,1]	chr7	325772	919	INTRON	INTRON	MGC4859	ENSG00000283117.1	ENST00000634803.1	lncRNA	lncRNA	lncRNA	lncRNA	2	21	2	1.91937	3.145365	4.37136	0.0468438	0.00345135	0.167716	0.0517761
chr7	74477737	74477837	3333894	0	+	0.66	(0.57,1]	chr7	310175	232	INTRON	INTRON	GTF2IRD1	ENSG00000006704.11	ENST00000265755.7:ENST00000424337.7:ENST00000455841.6	protein_coding	protein_coding	protein_coding	protein_coding	2	21	2	1.91937	3.145365	4.37136	0.0468438	0.00345135	0.167716	0.0517761
chr2	169893893	169893991	908813	0	+	0.346939	(0.32,0.35]	chr2	100252	23	INTRON	INTRON	UBR3	ENSG00000144357.18	ENST00000272793.11	protein_coding	protein_coding	protein_coding	protein_coding	2	36	2	2.01768	3.14534	4.273	0.0368357	0.0361337	0.152563	0.138959
chr7	141787022	141787122	3440591	0	+	0.33	(0.32,0.35]	chr7	320701	363	INTRON	INTRON	SSBP1	ENSG00000106028.11	ENST00000465582.5	protein_coding	protein_coding	protein_coding	protein_coding	2	36	2	2.01768	3.14534	4.273	0.0368357	0.0361337	0.152563	0.138959
chr19	8460869	8460969	7010923	0	+	0.46	(0.44,0.476]	chr19	696143	49	INTRON	INTRON	HNRNPM	ENSG00000099783.12	ENST00000348943.7:ENST00000597813.5:ENST00000600092.5:ENST00000325495.9:ENST00000600806.5:ENST00000620401.4:ENST00000594907.5:ENST00000596984.5:ENST00000601645.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	86	2	2.28847	3.145195	4.00192	0.00692113	7.32704e-5	0.0718189	0.00714177
chr2	10788024	10788110	1066464	0	-	0.383721	(0.378,0.408]	chr2	113829	2	INTRON	INTRON	PDIA6	ENSG00000143870.13	ENST00000272227.8:ENST00000381611.8:ENST00000404371.6:ENST00000617249.4:ENST00000540494.5:ENST00000404824.2	protein_coding	protein_coding	protein_coding	protein_coding	4	96	2	3.05502	3.14518	3.23534	0.00689519	5.26448e-5	0.0717484	0.00591845
chr10	125059528	125059627	4713324	0	-	0.474747	(0.44,0.476]	chr10	434897	200	INTRON	INTRON	CTBP2	ENSG00000175029.17	ENST00000337195.9:ENST00000411419.6:ENST00000494626.6:ENST00000531469.5:ENST00000460976.5:ENST00000476817.1:ENST00000530884.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	54	2	3.02366	3.145175	3.26669	0.00603307	0.00305435	0.0700813	0.0493883
chr12	65178002	65178102	5157197	0	+	0.46	(0.44,0.476]	chr12	488236	62	INTRON	INTRON	LEMD3	ENSG00000174106.3	ENST00000308330.3:ENST00000541171.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	54	2	3.02366	3.145175	3.26669	0.00603307	0.00305435	0.0700813	0.0493883
chr16	69373748	69373848	6508078	0	-	0.53	(0.515,0.57]	chr16	630123	10	INTRON	INTRON	TERF2	ENSG00000132604.11	ENST00000254942.8:ENST00000566750.5:ENST00000569542.6:ENST00000566257.5:ENST00000569611.6:ENST00000567296.6:ENST00000569280.1:ENST00000567841.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	62	2	3.08789	3.145145	3.2024	0.00322022	4.83127e-4	0.0507087	0.0199261
chr19	13835148	13835248	7143271	0	-	0.52	(0.515,0.57]	chr19	721118	114	EXON_LNCRNA	EXON_LNCRNA	MIR23AHG	ENSG00000267519.6	ENST00000587762.2	lncRNA	lncRNA	lncRNA	lncRNA	3	62	2	3.08789	3.145145	3.2024	0.00322022	4.83127e-4	0.0507087	0.0199261
chr2	65095073	65095173	1142611	0	-	0.34	(0.32,0.35]	chr2	122174	36	INTRON	INTRON	RAB1A	ENSG00000138069.18	ENST00000649427.1:ENST00000494188.1:ENST00000409784.8:ENST00000409892.5:ENST00000409751.1:ENST00000398529.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	192	2	2.34962	3.145055	3.94049	0.00342953	7.82975e-7	0.0517761	4.97397e-4
chr12	53180200	53180289	5327573	0	-	0.52809	(0.515,0.57]	chr12	508246	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CSAD	ENSG00000139631.20	ENST00000444623.6:ENST00000267085.8:ENST00000379850.7:ENST00000379846.5:ENST00000453446.6:ENST00000437073.5:ENST00000424990.5	protein_coding	protein_coding	protein_coding	protein_coding	6	93	2	2.25019	3.145005	4.03982	0.00169679	6.5518e-5	0.0381936	0.00715707
chr12	116132208	116132308	5424091	0	-	0.44	(0.408,0.44]	chr12	518263	203	INTRON	INTRON	MED13L	ENSG00000123066.9	ENST00000281928.9:ENST00000650226.1:ENST00000548743.2:ENST00000647567.1:ENST00000551197.2	protein_coding	protein_coding	protein_coding	protein_coding	11	247	2	2.59047	3.1447950000000002	3.69912	2.88762e-4	1.70482e-7	0.0156536	1.88633e-4
chr1	20743811	20743909	389419	0	-	0.571429	(0.57,1]	chr1	46510	37	UTR3	UTR3:EXON_MRNA:INTRON	HP1BP3	ENSG00000127483.19	ENST00000438032.6:ENST00000312239.10:ENST00000375003.6:ENST00000488722.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	44	435	2	2.48486	3.144745	3.80463	5.10531e-7	1.87574e-11	3.81586e-4	3.4053e-7
chr6	37834908	37835008	2857184	0	+	0.35	(0.32,0.35]	chr6	270225	145	INTRON	INTRON	ZFAND3	ENSG00000156639.12	ENST00000287218.9:ENST00000373391.6:ENST00000474522.5	protein_coding	protein_coding	protein_coding	protein_coding	3	44	2	1.83315	3.14472	4.45629	0.0313348	0.0246089	0.144381	0.12011
chr7	30602366	30602461	3301509	0	+	0.421053	(0.408,0.44]	chr7	306537	13	EXON_MRNA	EXON_MRNA:INTRON	GARS1	ENSG00000106105.15	ENST00000675051.1:ENST00000470392.2:ENST00000674643.1:ENST00000675529.1:ENST00000674807.1:ENST00000675810.1:ENST00000676088.1:ENST00000674815.1:ENST00000676403.1:ENST00000485784.2:ENST00000676210.1:ENST00000478124.6:ENST00000454308.6:ENST00000389266.8:ENST00000675693.1:ENST00000676259.1:ENST00000675651.1:ENST00000674616.1:ENST00000674737.1:ENST00000675859.1:ENST00000676140.1:ENST00000674969.1:ENST00000676164.1:ENST00000675886.1:ENST00000444666.6:ENST00000675587.1:ENST00000674851.1:ENST00000675863.1:ENST00000675025.1:ENST00000674734.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	78	2	2.78122	3.144705	3.50819	0.015812	5.7683e-5	0.101453	0.00620725
chr9	136417448	136417516	4221358	0	+	0.441176	(0.44,0.476]	chr9	387537	3	SS5_PROX	SS5_PROX:INTRON	PMPCA	ENSG00000165688.12	ENST00000371717.8:ENST00000399219.7:ENST00000462616.1:ENST00000444897.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	138	2	3.13746	3.14459	3.15172	1.3147e-4	8.94727e-5	0.010437	0.0079464
chr15	90968189	90968288	6259376	0	-	0.474747	(0.44,0.476]	chr15	597273	11	UTR3	UTR3:EXON_MRNA:INTRON	PRC1:ENSG00000284946	ENSG00000198901.14:ENSG00000284946.1	ENST00000394249.8:ENST00000556972.6:ENST00000361188.9:ENST00000643536.1:ENST00000555455.5:ENST00000560423.5:ENST00000442656.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	114	2	3.06553	3.144515	3.2235	3.98783e-4	1.35514e-4	0.0185763	0.0100405
chr16	11888150	11888250	6446121	0	-	0.52	(0.515,0.57]	chr16	621097	4	SS3_PROX	SS3_PROX:INTRON	GSPT1	ENSG00000103342.13	ENST00000434724.7:ENST00000439887.6:ENST00000565267.5:ENST00000563468.5:ENST00000420576.6:ENST00000568849.5	protein_coding	protein_coding	protein_coding	protein_coding	4	74	2	2.364	3.1445	3.925	0.00447856	8.71525e-5	0.0593175	0.00783545
chr9	98788325	98788423	4302167	0	-	0.591837	(0.57,1]	chr9	395648	31	INTRON	INTRON	ANKS6	ENSG00000165138.18	ENST00000375019.6:ENST00000353234.5:ENST00000634393.1:ENST00000466120.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	51	2	3.07938	3.144275	3.20917	4.22401e-4	2.02775e-4	0.0183838	0.0129814
chr12	62281308	62281408	5149758	0	+	0.44	(0.408,0.44]	chr12	487287	22	INTRON	INTRON	USP15	ENSG00000135655.16	ENST00000353364.7:ENST00000549523.5:ENST00000550632.5:ENST00000312635.10:ENST00000548524.5:ENST00000280377.10:ENST00000551206.5:ENST00000546718.5:ENST00000537297.2:ENST00000549237.5:ENST00000548836.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	54	2	2.78122	3.144265	3.50731	0.015812	8.5918e-4	0.101453	0.0265787
chr1	149238076	149238176	548272	0	-	0.48	(0.476,0.515]	chr1	64451	366	INTRON	INTRON	ENSG00000215861	ENSG00000215861.7	ENST00000685012.1:ENST00000313342.8:ENST00000663163.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	3	72	2	2.84068	3.14426	3.44784	0.00217133	0.00113238	0.0417893	0.0308465
chr1	228089347	228089442	330836	0	+	0.652632	(0.57,1]	chr1	38115	7	INTRON	INTRON	ARF1	ENSG00000143761.16	ENST00000540651.5:ENST00000272102.10:ENST00000470670.5:ENST00000478424.5:ENST00000470558.5:ENST00000473949.5:ENST00000477451.5:ENST00000478336.5:ENST00000541182.1:ENST00000469235.5:ENST00000473546.1:ENST00000482962.5:ENST00000497165.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	42	2	3.02967	3.14425	3.25883	0.00471306	1.51392e-4	0.0631419	0.0112689
chr1	145783238	145783338	540246	0	-	0.4	(0.378,0.408]	chr1	63364	95	INTRON	INTRON	RNF115	ENSG00000265491.5	ENST00000582693.5	protein_coding	protein_coding	protein_coding	protein_coding	2	33	2	1.97143	3.1442099999999997	4.31699	0.0398704	0.0250408	0.161534	0.12011
chr19	45111817	45111917	7079225	0	+	0.39	(0.378,0.408]	chr19	708078	30	INTRON	INTRON	PPP1R37	ENSG00000104866.11	ENST00000544069.2:ENST00000221462.9:ENST00000544897.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	33	2	1.97143	3.1442099999999997	4.31699	0.0398704	0.0250408	0.161534	0.12011
chr2	61430217	61430317	1130148	0	-	0.38	(0.378,0.408]	chr2	121499	90	INTRON	INTRON	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000453133.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	33	2	1.97143	3.1442099999999997	4.31699	0.0398704	0.0250408	0.161534	0.12011
chr5	141579596	141579696	2739781	0	-	0.38	(0.378,0.408]	chr5	258123	4	SS3_PROX	SS3_PROX:INTRON	DIAPH1	ENSG00000131504.18	ENST00000647433.1:ENST00000389054.8:ENST00000518047.5:ENST00000647330.1:ENST00000523100.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	33	2	1.97143	3.1442099999999997	4.31699	0.0398704	0.0250408	0.161534	0.12011
chr7	129016482	129016582	3636195	0	-	0.38	(0.378,0.408]	chr7	338129	1	SS5_PROX	SS5_PROX:INTRON	TNPO3	ENSG00000064419.14	ENST00000627585.2:ENST00000265388.10:ENST00000471234.5:ENST00000482320.5:ENST00000471166.1	protein_coding	protein_coding	protein_coding	protein_coding	2	33	2	1.97143	3.1442099999999997	4.31699	0.0398704	0.0250408	0.161534	0.12011
chrX	9604409	9604509	7620053	0	+	0.4	(0.378,0.408]	chrX	779963	435	INTRON	INTRON	TBL1X	ENSG00000101849.18	ENST00000407597.7:ENST00000380961.5:ENST00000424279.6:ENST00000645353.2:ENST00000422314.5:ENST00000645686.1:ENST00000646640.1:ENST00000647172.1:ENST00000452824.5:ENST00000415293.6:ENST00000683056.1:ENST00000647060.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	33	2	1.97143	3.1442099999999997	4.31699	0.0398704	0.0250408	0.161534	0.12011
chr14	101973118	101973218	5820306	0	+	0.26	[0,0.28]	chr14	551975	78	INTRON	INTRON	DYNC1H1	ENSG00000197102.14	ENST00000360184.10:ENST00000684561.1:ENST00000680313.1:ENST00000679720.1:ENST00000680715.1:ENST00000681283.1:ENST00000681822.1:ENST00000679910.1:ENST00000681574.1:ENST00000645039.2:ENST00000645149.2:ENST00000680200.1:ENST00000680120.1:ENST00000644881.2:ENST00000681066.1:ENST00000680423.1:ENST00000681536.1:ENST00000679486.1:ENST00000681010.1:ENST00000679629.1:ENST00000681123.1:ENST00000680874.1:ENST00000680137.1:ENST00000643508.2:ENST00000680808.1:ENST00000681311.1:ENST00000681859.1:ENST00000643684.1:ENST00000643958.2:ENST00000680001.1:ENST00000681668.1:ENST00000645114.2:ENST00000681751.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	34	2	2.20927	3.14414	4.07901	0.0794763	0.0494049	0.19979	0.174117
chr3	32747438	32747538	1393751	0	+	0.16	[0,0.28]	chr3	145926	96	INTRON	INTRON	CNOT10	ENSG00000182973.20	ENST00000331889.10:ENST00000328834.10:ENST00000435630.5:ENST00000454516.7:ENST00000416457.5:ENST00000430408.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	34	2	2.20927	3.14414	4.07901	0.0794763	0.0494049	0.19979	0.174117
chr9	92646866	92646965	4288011	0	-	0.343434	(0.32,0.35]	chr9	394426	37	INTRON	INTRON	IPPK	ENSG00000127080.10	ENST00000287996.8	protein_coding	protein_coding	protein_coding	protein_coding	3	49	2	1.64769	3.144075	4.64046	0.0578603	0.00724767	0.167723	0.0756327
chr17	32711687	32711787	6755432	0	-	0.29	(0.28,0.32]	chr17	663955	3	SS5_PROX	SS5_PROX:INTRON	MYO1D	ENSG00000176658.17	ENST00000318217.10:ENST00000394649.8:ENST00000579584.5:ENST00000585094.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	69	2	2.57195	3.144055	3.71616	0.0331711	4.76221e-4	0.133994	0.0197443
chr19	3435607	3435707	7000324	0	+	0.48	(0.476,0.515]	chr19	694201	4	SS5_PROX	SS5_PROX:INTRON	NFIC	ENSG00000141905.19	ENST00000641145.1:ENST00000589123.5:ENST00000395111.7:ENST00000586919.5:ENST00000341919.7:ENST00000443272.3:ENST00000590282.5:ENST00000589537.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	95	2	2.87406	3.14398	3.4139	0.00188729	1.00747e-4	0.0391691	0.00847812
chr22	19481637	19481729	7476850	0	+	0.478261	(0.476,0.515]	chr22	762395	2	INTRON	INTRON	CDC45	ENSG00000093009.11	ENST00000407835.6:ENST00000455750.6:ENST00000491520.5:ENST00000437685.6:ENST00000483431.5:ENST00000438587.6:ENST00000672837.1:ENST00000263201.7:ENST00000404724.7:ENST00000487669.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	135	2	2.23459	3.14396	4.05333	0.00114776	5.62932e-5	0.0308671	0.00613846
chr4	2502130	2502229	1912164	0	+	0.363636	(0.35,0.378]	chr4	191953	10	INTRON	INTRON	RNF4	ENSG00000063978.16	ENST00000541204.5:ENST00000502316.5:ENST00000509388.5:ENST00000507247.5:ENST00000314289.13:ENST00000511843.5:ENST00000509258.5:ENST00000513284.5:ENST00000511859.5:ENST00000513643.5:ENST00000506706.5:ENST00000511600.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	10	224	2	2.69076	3.1438699999999997	3.59698	6.70777e-5	1.51508e-5	0.00678102	0.00311809
chr1	28901503	28901603	58824	0	+	0.44	(0.408,0.44]	chr1	7617	73	INTRON	INTRON	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000647918.1:ENST00000646800.1:ENST00000644342.1:ENST00000646189.1:ENST00000482464.6:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000646260.1:ENST00000373798.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	54	2	3.08738	3.14386	3.20034	0.00478231	0.00398025	0.0636201	0.0549214
chr9	130782753	130782853	4214552	0	+	0.42	(0.408,0.44]	chr9	386427	679	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000393293.4	protein_coding	protein_coding	protein_coding	protein_coding	2	54	2	3.08738	3.14386	3.20034	0.00478231	0.00398025	0.0636201	0.0549214
chr1	24775294	24775394	46360	0	+	0.29	(0.28,0.32]	chr1	5764	293	INTRON	INTRON	CLIC4	ENSG00000169504.15	ENST00000488683.1:ENST00000497755.1:ENST00000489758.1:ENST00000374379.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	51	2	2.14534	3.14374	4.14214	0.0579756	0.0117054	0.167723	0.0962115
chr17	66337492	66337591	6662646	0	+	0.454545	(0.44,0.476]	chr17	650320	310	INTRON	INTRON	PRKCA	ENSG00000154229.12	ENST00000413366.8:ENST00000578063.5:ENST00000583361.1:ENST00000284384.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	45	2	1.60176	3.1437	4.68564	0.0389597	0.00816201	0.160861	0.0766625
chr6	34613003	34613103	3085380	0	-	0.47	(0.44,0.476]	chr6	288679	57	INTRON	INTRON	ILRUN	ENSG00000196821.10	ENST00000374026.7:ENST00000374023.8:ENST00000374021.1	protein_coding	protein_coding	protein_coding	protein_coding	3	74	2	2.97451	3.14363	3.31275	0.00853825	1.73222e-4	0.0780043	0.0114086
chr22	50359232	50359332	7544348	0	+	0.58	(0.57,1]	chr22	771015	153	INTRON	INTRON	PPP6R2	ENSG00000100239.16	ENST00000359139.7:ENST00000395741.7:ENST00000612753.5:ENST00000395744.7	protein_coding	protein_coding	protein_coding	protein_coding	3	39	2	2.58733	3.1435950000000004	3.69986	0.00454222	1.9698e-4	0.0595107	0.0122531
chr6	4795903	4796003	2791057	0	+	0.29	(0.28,0.32]	chr6	263598	187	INTRON	INTRON	CDYL	ENSG00000153046.18	ENST00000328908.9:ENST00000491864.1:ENST00000440139.5:ENST00000483019.1:ENST00000397588.8:ENST00000472453.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	167	2	2.74699	3.14346	3.53993	4.11473e-4	1.65959e-4	0.0181365	0.0118079
chr16	85619075	85619175	6416027	0	+	0.58	(0.57,1]	chr16	615481	53	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1:ENST00000405402.6:ENST00000411612.5:ENST00000253458.12:ENST00000393243.5	protein_coding	protein_coding	protein_coding	protein_coding	3	39	2	2.80351	3.14344	3.48337	0.00172505	6.20854e-4	0.0374701	0.0223951
chr6	127313691	127313791	3211557	0	-	0.4	(0.378,0.408]	chr6	298728	1	SS3_PROX	SS3_PROX:INTRON	ECHDC1	ENSG00000093144.19	ENST00000454859.8:ENST00000531967.5:ENST00000474289.6:ENST00000368295.8:ENST00000454591.6:ENST00000528402.5:ENST00000479525.6:ENST00000368291.6:ENST00000475319.1:ENST00000430841.6:ENST00000368289.6:ENST00000417628.6:ENST00000368292.10:ENST00000436638.5:ENST00000460558.5:ENST00000461239.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	28	2	2.46373	3.143335	3.82294	0.044228	0.0382831	0.162255	0.141795
chr10	49160347	49160440	4613764	0	-	0.387097	(0.378,0.408]	chr10	424945	1	UTR3	UTR3:EXON_MRNA:INTRON	TMEM273	ENSG00000204161.14	ENST00000374151.7:ENST00000374156.8:ENST00000374153.7:ENST00000488276.1:ENST00000474718.5:ENST00000453436.5:ENST00000374148.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	35	2	2.29798	3.143325	3.98867	0.0507	0.0147606	0.156383	0.106702
chr12	110025641	110025741	5224957	0	+	0.39	(0.378,0.408]	chr12	495045	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	ANKRD13A	ENSG00000076513.17	ENST00000553025.5:ENST00000261739.9:ENST00000547639.5:ENST00000546476.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	35	2	2.29798	3.143325	3.98867	0.0507	0.0147606	0.156383	0.106702
chr2	31983792	31983892	1090849	0	-	0.4	(0.378,0.408]	chr2	116913	206	INTRON	INTRON	MEMO1:DPY30	ENSG00000162959.14:ENSG00000162961.14	ENST00000295065.9:ENST00000446765.5:ENST00000404530.6:ENST00000490459.5:ENST00000426310.6:ENST00000413686.1:ENST00000407893.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	35	2	2.29798	3.143325	3.98867	0.0507	0.0147606	0.156383	0.106702
chr17	30133028	30133127	6587552	0	+	0.50505	(0.476,0.515]	chr17	640563	49	INTRON	INTRON	NSRP1	ENSG00000126653.18	ENST00000540900.7:ENST00000612959.4:ENST00000247026.10:ENST00000577289.6:ENST00000584154.5:ENST00000394826.8:ENST00000475652.5:ENST00000584317.5:ENST00000583301.5:ENST00000585881.5:ENST00000467446.6:ENST00000580103.6:ENST00000581048.5:ENST00000588614.1:ENST00000589608.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	85	2	2.75286	3.14324	3.53362	0.00102391	7.3224e-4	0.029231300000000002	0.0246502
chr5	33451356	33451453	2335232	0	+	0.453608	(0.44,0.476]	chr5	225424	23	INTRON	INTRON	TARS1	ENSG00000113407.14	ENST00000502553.5:ENST00000514259.5:ENST00000508361.5:ENST00000265112.8:ENST00000455217.6:ENST00000507716.5:ENST00000509731.5:ENST00000505012.5:ENST00000513066.3:ENST00000627006.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	74	2	2.19078	3.14323	4.09568	0.0226089	4.34828e-5	0.117489	0.00532088
chr16	87731443	87731543	6538324	0	-	0.42	(0.408,0.44]	chr16	633530	4	INTRON	INTRON	KLHDC4	ENSG00000104731.14	ENST00000567298.5:ENST00000270583.10:ENST00000347925.9:ENST00000353170.9:ENST00000316853.10:ENST00000566349.5:ENST00000562155.5:ENST00000622456.4:ENST00000562261.1:ENST00000566661.5:ENST00000567513.1:ENST00000564484.5:ENST00000565328.5:ENST00000569747.5:ENST00000564396.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	116	2	2.88568	3.143155	3.40063	5.30887e-4	1.06576e-4	0.0212758	0.00874587
chr7	156840883	156840983	3687495	0	-	0.5	(0.476,0.515]	chr7	342096	36	INTRON	INTRON	LMBR1	ENSG00000105983.23	ENST00000353442.10:ENST00000415428.5:ENST00000454132.5:ENST00000434503.5:ENST00000430278.5:ENST00000434278.5:ENST00000444719.5:ENST00000461469.5:ENST00000414218.1:ENST00000434453.1:ENST00000498034.5:ENST00000433968.5:ENST00000485985.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	144	2	2.61987	3.14313	3.66639	2.71328e-4	3.7744e-5	0.014624	0.00523787
chr17	32362490	32362568	6598109	0	+	0.269231	[0,0.28]	chr17	641914	2	SS3_PROX	SS3_PROX:INTRON	ZNF207	ENSG00000010244.19	ENST00000321233.10:ENST00000394673.6:ENST00000394670.9:ENST00000342555.10:ENST00000577908.5:ENST00000394679.9:ENST00000581531.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	258	2	2.86826	3.143045	3.41783	4.27656e-4	5.67034e-5	0.0189958	0.00615355
chr4	2002150	2002249	2095982	0	-	0.434343	(0.408,0.44]	chr4	207403	97	INTRON	INTRON	NELFA	ENSG00000185049.16	ENST00000542778.5:ENST00000382882.9:ENST00000333877.8:ENST00000431323.6:ENST00000455762.5:ENST00000421397.5:ENST00000411649.3:ENST00000443203.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	110	2	2.05715	3.143025	4.2289	0.00463619	3.9467e-5	0.0628302	0.00535965
chr10	30337227	30337327	4587522	0	-	0.5	(0.476,0.515]	chr10	422974	2	SS3_PROX	SS3_PROX:INTRON	MTPAP	ENSG00000107951.15	ENST00000263063.9:ENST00000488290.5:ENST00000417581.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	71	2	2.66112	3.14288	3.62464	0.0044598	5.079e-4	0.0592169	0.0202328
chr6	156981812	156981912	3009209	0	+	0.51	(0.476,0.515]	chr6	281124	381	INTRON	INTRON	ARID1B	ENSG00000049618.24	ENST00000346085.10:ENST00000636930.2:ENST00000647938.1:ENST00000350026.10:ENST00000674298.1:ENST00000674190.1:ENST00000414678.7:ENST00000638000.1:ENST00000319584.11:ENST00000452544.2:ENST00000637887.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	71	2	2.66112	3.14288	3.62464	0.0044598	5.079e-4	0.0592169	0.0202328
chr17	59058645	59058744	6801436	0	-	0.474747	(0.44,0.476]	chr17	671743	12	INTRON	INTRON	TRIM37	ENSG00000108395.14	ENST00000393066.7:ENST00000577554.5:ENST00000262294.12:ENST00000393065.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	53	2	2.97451	3.142805	3.3111	0.00853825	0.0020006	0.0780043	0.0412555
chr18	79075295	79075394	6934055	0	+	0.454545	(0.44,0.476]	chr18	685816	54	INTRON	INTRON	ATP9B	ENSG00000166377.21	ENST00000588600.1:ENST00000586366.5:ENST00000426216.6:ENST00000307671.12:ENST00000586672.5:ENST00000586722.5:ENST00000591464.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	53	2	2.97451	3.142805	3.3111	0.00853825	0.0020006	0.0780043	0.0412555
chr1	50870393	50870493	451357	0	-	0.46	(0.44,0.476]	chr1	54267	120	INTRON	INTRON	FAF1	ENSG00000185104.21	ENST00000396153.7:ENST00000487898.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	53	2	3.02751	3.14276	3.25801	0.00715968	0.00248185	0.0723634	0.0460771
chr12	94402585	94402669	5389533	0	-	0.535714	(0.515,0.57]	chr12	513855	4	INTRON	INTRON	CEP83	ENSG00000173588.16	ENST00000397809.10:ENST00000339839.9:ENST00000547232.5:ENST00000547575.5:ENST00000549352.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	35	2	1.60221	3.1426549999999995	4.6831	0.0581855	0.00471288	0.188704	0.0600108
chr2	159729375	159729475	899655	0	+	0.53	(0.515,0.57]	chr2	99527	2	SS5_PROX	SS5_PROX:INTRON	MARCHF7	ENSG00000136536.15	ENST00000539065.5:ENST00000259050.8:ENST00000409175.6:ENST00000421037.1:ENST00000473749.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	35	2	1.60221	3.1426549999999995	4.6831	0.0581855	0.00471288	0.188704	0.0600108
chr12	91311511	91311611	5382322	0	-	0.3	(0.28,0.32]	chr12	513439	343	INTRON	INTRON	ENSG00000289605	ENSG00000289605.1	ENST00000685093.1	lncRNA	lncRNA	lncRNA	lncRNA	2	42	2	1.76293	3.14263	4.52233	0.0766478	0.0129279	0.196164	0.0990564
chr15	89091264	89091363	6094593	0	+	0.30303	(0.28,0.32]	chr15	579963	5	INTRON	INTRON	ABHD2	ENSG00000140526.18	ENST00000569411.5:ENST00000569550.5:ENST00000564876.5:ENST00000565066.5:ENST00000565973.5:ENST00000352732.10:ENST00000565825.5:ENST00000562254.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	42	2	1.76293	3.14263	4.52233	0.0766478	0.0129279	0.196164	0.0990564
chr8	125014795	125014894	3853392	0	+	0.373737	(0.35,0.378]	chr8	355167	28	INTRON	INTRON	SQLE	ENSG00000104549.12	ENST00000523430.5:ENST00000265896.10:ENST00000518931.1:ENST00000520493.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	47	2	1.49446	3.1426250000000002	4.79079	0.054297	0.00846427	0.182243	0.0776969
chr1	10525922	10526022	23488	0	+	0.45	(0.44,0.476]	chr1	2509	84	INTRON	INTRON	PEX14	ENSG00000142655.13	ENST00000472851.1:ENST00000356607.9:ENST00000491661.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	32	2	1.85146	3.142615	4.43377	0.0545846	0.0162803	0.182529	0.101453
chr1	15705264	15705363	34222	0	+	0.454545	(0.44,0.476]	chr1	4144	203	INTRON	INTRON	PLEKHM2	ENSG00000116786.13	ENST00000375799.8:ENST00000375793.2:ENST00000462455.1:ENST00000642363.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	32	2	1.85146	3.142615	4.43377	0.0545846	0.0162803	0.182529	0.101453
chr1	61700933	61701025	468128	0	-	0.445652	(0.44,0.476]	chr1	56567	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	TM2D1	ENSG00000162604.12	ENST00000606498.5:ENST00000294613.9:ENST00000371180.6:ENST00000488206.5:ENST00000472989.5:ENST00000468586.5:ENST00000371178.5:ENST00000494926.5:ENST00000496465.1:ENST00000371177.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	32	2	1.85146	3.142615	4.43377	0.0545846	0.0162803	0.182529	0.101453
chr10	130173008	130173105	4536703	0	+	0.463918	(0.44,0.476]	chr10	418822	10	INTRON	INTRON	GLRX3	ENSG00000108010.12	ENST00000331244.10:ENST00000481034.1:ENST00000368644.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	32	2	1.85146	3.142615	4.43377	0.0545846	0.0162803	0.182529	0.101453
chr13	99521820	99521919	5527079	0	+	0.474747	(0.44,0.476]	chr13	528351	13	INTRON	INTRON	TM9SF2	ENSG00000125304.10	ENST00000642475.1:ENST00000376387.5:ENST00000463709.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	32	2	1.85146	3.142615	4.43377	0.0545846	0.0162803	0.182529	0.101453
chr16	89533415	89533509	6420608	0	+	0.446809	(0.44,0.476]	chr16	616255	8	UTR3	UTR3:EXON_MRNA:INTRON	SPG7	ENSG00000197912.16	ENST00000647079.1:ENST00000646303.1:ENST00000643649.1:ENST00000643307.1:ENST00000644498.1:ENST00000645897.1:ENST00000643668.1:ENST00000644225.1:ENST00000645818.2:ENST00000645977.1:ENST00000645063.1:ENST00000646263.1:ENST00000643724.1:ENST00000644781.1:ENST00000644901.1:ENST00000645042.1:ENST00000646531.1:ENST00000646930.1:ENST00000642436.1:ENST00000644210.1:ENST00000646589.1:ENST00000268704.7:ENST00000646826.1:ENST00000646716.1:ENST00000643345.1:ENST00000341316.6:ENST00000646958.1:ENST00000643105.1:ENST00000645354.1:ENST00000642334.1:ENST00000647227.1:ENST00000646445.1:ENST00000643954.1:ENST00000646399.1:ENST00000644671.1:ENST00000644748.1:ENST00000643496.1:ENST00000647032.1:ENST00000644751.1:ENST00000642427.1:ENST00000643370.1:ENST00000645886.1:ENST00000646454.1:ENST00000561945.2:ENST00000644171.1:ENST00000566682.2:ENST00000645258.1:ENST00000567138.3:ENST00000644044.1:ENST00000642263.1:ENST00000644556.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	32	2	1.85146	3.142615	4.43377	0.0545846	0.0162803	0.182529	0.101453
chr6	57159395	57159494	2878772	0	+	0.454545	(0.44,0.476]	chr6	273319	50	INTRON	INTRON	ZNF451	ENSG00000112200.17	ENST00000357489.7:ENST00000370706.9:ENST00000504603.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	32	2	1.85146	3.142615	4.43377	0.0545846	0.0162803	0.182529	0.101453
chr9	114392063	114392163	4320876	0	-	0.47	(0.44,0.476]	chr9	397692	41	INTRON	INTRON	AKNA	ENSG00000106948.17	ENST00000307564.8	protein_coding	protein_coding	protein_coding	protein_coding	2	32	2	1.85146	3.142615	4.43377	0.0545846	0.0162803	0.182529	0.101453
chr22	19906610	19906709	7555962	0	-	0.333333	(0.32,0.35]	chr22	772518	72	INTRON	INTRON	TXNRD2	ENSG00000184470.21	ENST00000400518.5:ENST00000542719.6:ENST00000494454.5:ENST00000474308.5:ENST00000400525.6:ENST00000400521.7:ENST00000400519.6:ENST00000635155.1:ENST00000491939.6:ENST00000334363.14:ENST00000475995.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	111	2	2.92204	3.142605	3.36317	0.00202818	1.69213e-4	0.04086	0.0112853
chr7	27626070	27626170	3510571	0	-	0.39	(0.378,0.408]	chr7	327330	826	INTRON	INTRON	HIBADH	ENSG00000106049.9	ENST00000265395.7:ENST00000428288.2:ENST00000425715.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	55	2	2.95459	3.1424250000000002	3.33026	0.00957623	0.00189824	0.0820838	0.0402736
chr14	49843452	49843552	5887167	0	-	0.38	(0.378,0.408]	chr14	558791	22	INTRON	INTRON	NEMF	ENSG00000165525.18	ENST00000298310.10:ENST00000555970.5:ENST00000557380.5:ENST00000554626.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	55	2	3.00568	3.142375	3.27907	0.00811866	0.0023379	0.0766625	0.0442989
chr17	40130378	40130463	6609045	0	+	0.388235	(0.378,0.408]	chr17	643635	2	INTRON	INTRON	MSL1	ENSG00000188895.12	ENST00000398532.9:ENST00000578648.5:ENST00000579565.5:ENST00000582884.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	55	2	3.00568	3.142375	3.27907	0.00811866	0.0023379	0.0766625	0.0442989
chr4	1729486	1729586	1910214	0	+	0.55	(0.515,0.57]	chr4	191581	3	INTRON	INTRON	TACC3	ENSG00000013810.21	ENST00000651472.1:ENST00000612220.5:ENST00000484651.5:ENST00000313288.9:ENST00000652770.1:ENST00000651251.1:ENST00000650779.1:ENST00000470136.2:ENST00000651817.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	41	2	1.68552	3.1423300000000003	4.59914	0.0292028	0.00616166	0.141637	0.0676501
chr7	139401836	139401936	3438017	0	+	0.54	(0.515,0.57]	chr7	320348	3	SS3_PROX	SS3_PROX:INTRON	LUC7L2:FMC1-LUC7L2	ENSG00000146963.18:ENSG00000269955.2	ENST00000541170.7:ENST00000541515.3:ENST00000619796.4:ENST00000354926.9:ENST00000456182.5:ENST00000263545.7:ENST00000463912.5:ENST00000498518.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	41	2	1.68552	3.1423300000000003	4.59914	0.0292028	0.00616166	0.141637	0.0676501
chr11	3751620	3751719	4894703	0	-	0.525253	(0.515,0.57]	chr11	458870	66	INTRON	INTRON	NUP98	ENSG00000110713.17	ENST00000359171.8:ENST00000324932.12:ENST00000650171.1:ENST00000355260.7:ENST00000397004.8:ENST00000397007.8:ENST00000527104.5:ENST00000529379.1:ENST00000397013.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	46	2	3.03037	3.142245	3.25412	0.00608732	0.00224554	0.0676501	0.0435144
chr15	64140680	64140779	6043331	0	+	0.494949	(0.476,0.515]	chr15	575580	26	UTR3	UTR3:EXON_MRNA:INTRON	SNX1	ENSG00000028528.15	ENST00000559844.6:ENST00000380285.7:ENST00000558040.5:ENST00000560861.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	87	2	2.61871	3.1421799999999998	3.66565	0.00174257	4.18031e-4	0.0375363	0.0182827
chr12	108674489	108674589	5406202	0	-	0.46	(0.44,0.476]	chr12	516004	120	INTRON	INTRON	CORO1C	ENSG00000110880.11	ENST00000261401.8:ENST00000420959.6:ENST00000541050.5:ENST00000549384.5:ENST00000421578.6:ENST00000550542.5:ENST00000549772.5:ENST00000552871.5:ENST00000547294.5:ENST00000550032.5:ENST00000551550.5:ENST00000546571.5:ENST00000551044.1:ENST00000547170.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	71	2	2.73781	3.142065	3.54632	0.00276493	9.9951e-4	0.04867	0.0288906
chr2	61390780	61390879	1129747	0	-	0.535354	(0.515,0.57]	chr2	121474	71	INTRON	INTRON	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000453133.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	62	2	2.43783	3.1420399999999997	3.84625	0.00916404	1.34155e-4	0.0812949	0.00998237
chr2	75958664	75958764	817746	0	+	0.35	(0.32,0.35]	chr2	91391	858	INTRON	INTRON	ENSG00000287474	ENSG00000287474.1	ENST00000670606.1	lncRNA	lncRNA	lncRNA	lncRNA	1	31	2	2.51061	3.142025	3.77344	0.0596635	0.0364463	0.189982	0.138959
chr6	53329853	53329953	3107998	0	-	0.31	(0.28,0.32]	chr6	291049	338	INTRON	INTRON	ELOVL5	ENSG00000012660.14	ENST00000370918.8:ENST00000542638.5:ENST00000304434.11:ENST00000485336.5:ENST00000465983.5:ENST00000486973.1:ENST00000370913.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	47	2	1.85772	3.14201	4.4263	0.0330296	0.0300199	0.142135	0.133816
chr1	92272948	92273047	505111	0	-	0.323232	(0.32,0.35]	chr1	59733	9	INTRON	INTRON	GLMN	ENSG00000174842.17	ENST00000370360.8:ENST00000495106.5:ENST00000463560.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	63	2	2.6321	3.141985	3.65187	0.0268	5.49434e-4	0.123349	0.0213049
chr11	5427953	5428053	4897499	0	-	0.28	[0,0.28]	chr11	459187	807	INTRON	INTRON	HBG2:ENSG00000239920:HBE1:OR51B5	ENSG00000196565.15:ENSG00000239920.2:ENSG00000213931.7:ENSG00000167355.8	ENST00000380252.6:ENST00000380259.7:ENST00000292896.3:ENST00000380237.5:ENST00000420726.6:ENST00000420465.6:ENST00000415970.6:ENST00000418729.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:nonsense_mediated_decay:processed_transcript	2	48	2	1.89998	3.14187	4.38376	0.0599553	0.0258536	0.169548	0.133676
chr5	111502588	111502684	2702701	0	-	0.46875	(0.44,0.476]	chr5	254405	1	INTRON	INTRON	STARD4	ENSG00000164211.13	ENST00000296632.8:ENST00000512160.5:ENST00000511137.5:ENST00000502931.5:ENST00000505803.5:ENST00000502322.5:ENST00000509887.5:ENST00000511569.5:ENST00000511436.5:ENST00000510346.5:ENST00000455172.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	55	2	2.89047	3.141845	3.39322	0.00955699	0.00187283	0.0863913	0.0390476
chr5	39010986	39011086	2605013	0	-	0.47	(0.44,0.476]	chr5	247890	70	INTRON	INTRON	RICTOR	ENSG00000164327.13	ENST00000357387.8:ENST00000511516.5:ENST00000296782.9:ENST00000510711.5:ENST00000513566.1:ENST00000514735.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	34	2	2.27304	3.14171	4.01038	0.0433743	0.0158915	0.148082	0.109464
chr1	150573821	150573921	551026	0	-	0.55	(0.515,0.57]	chr1	64757	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MCL1	ENSG00000143384.14	ENST00000617352.1:ENST00000678770.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	87	2	2.5204	3.14167	3.76294	9.8022e-4	2.08636e-4	0.0285591	0.0125926
chr16	84721004	84721104	6410113	0	+	0.54	(0.515,0.57]	chr16	615272	41	INTRON	INTRON	USP10	ENSG00000103194.16	ENST00000562743.5:ENST00000540269.6:ENST00000563892.5:ENST00000562092.1:ENST00000569511.5:ENST00000219473.12:ENST00000570191.5:ENST00000563048.5:ENST00000562283.5:ENST00000563386.5:ENST00000569038.5:ENST00000570053.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	98	2	2.84736	3.14167	3.43598	4.72534e-4	7.05043e-5	0.0201458	0.00694412
chr17	27130806	27130906	6580133	0	+	0.47	(0.44,0.476]	chr17	639586	340	INTRON	INTRON	ENSG00000285822	ENSG00000285822.1	ENST00000649401.1	lncRNA	lncRNA	lncRNA	lncRNA	4	95	2	3.06222	3.1416	3.22098	8.483e-4	2.82213e-4	0.0267232	0.0149966
chr1	32057466	32057566	63090	0	+	0.46	(0.44,0.476]	chr1	7991	117	INTRON	INTRON	KHDRBS1	ENSG00000121774.18	ENST00000484270.2	protein_coding	processed_transcript	protein_coding	processed_transcript	13	245	2	2.26485	3.141595	4.01834	2.75802e-4	6.82349e-7	0.0147997	4.93429e-4
chr19	12941275	12941375	7022497	0	+	0.43	(0.408,0.44]	chr19	698294	3	SS5_PROX	SS5_PROX:INTRON	CALR	ENSG00000179218.15	ENST00000316448.10:ENST00000586967.2:ENST00000586760.2:ENST00000680816.1:ENST00000588454.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	160	2	1.92604	3.1414099999999996	4.35678	0.00154049	1.96856e-5	0.0362716	0.00359652
chr1	145780239	145780339	540216	0	-	0.34	(0.32,0.35]	chr1	63364	65	INTRON	INTRON	RNF115	ENSG00000265491.5	ENST00000582693.5	protein_coding	protein_coding	protein_coding	protein_coding	2	62	2	2.74415	3.141345	3.53854	0.0198267	9.09596e-4	0.109608	0.0277043
chr1	182855813	182855885	273148	0	+	0.388889	(0.378,0.408]	chr1	31894	1	SS5_PROX	SS5_PROX:INTRON	DHX9	ENSG00000135829.17	ENST00000367549.4:ENST00000479271.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	34	2	2.17608	3.141345	4.10661	0.0399023	0.0218783	0.143072	0.123836
chr17	1359303	1359402	6699192	0	-	0.393939	(0.378,0.408]	chr17	655527	46	INTRON	INTRON	YWHAE	ENSG00000108953.17	ENST00000264335.13:ENST00000466227.6:ENST00000571732.5:ENST00000573026.1:ENST00000496706.1:ENST00000573196.5:ENST00000575977.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	89	2	2.84624	3.141345	3.43645	0.00171162	4.63696e-4	0.037419	0.0195302
chr21	21149669	21149769	7380506	0	+	0.38	(0.378,0.408]	chr21	752602	1507	INTRON	INTRON	NCAM2	ENSG00000154654.15	ENST00000400546.6	protein_coding	protein_coding	protein_coding	protein_coding	2	34	2	2.17608	3.141345	4.10661	0.0399023	0.0218783	0.143072	0.123836
chr3	72419809	72419908	1745653	0	-	0.40404	(0.378,0.408]	chr3	177368	393	INTRON	INTRON	RYBP	ENSG00000163602.12	ENST00000477973.5	protein_coding	protein_coding	protein_coding	protein_coding	2	34	2	2.17608	3.141345	4.10661	0.0399023	0.0218783	0.143072	0.123836
chr5	139304846	139304945	2499492	0	+	0.40404	(0.378,0.408]	chr5	238913	50	INTRON	INTRON	MATR3	ENSG00000280987.4:ENSG00000015479.20	ENST00000509990.5:ENST00000506147.5:ENST00000512107.5:ENST00000361059.7:ENST00000394800.6:ENST00000502929.5:ENST00000504203.5:ENST00000514694.5:ENST00000509644.5:ENST00000505016.2:ENST00000502394.1:ENST00000512876.5:ENST00000513678.5:ENST00000513121.1:ENST00000504045.5:ENST00000504311.5:ENST00000502499.5:ENST00000510056.5:ENST00000511249.5:ENST00000394805.8:ENST00000507860.1:ENST00000509918.5:ENST00000503811.5:ENST00000511978.5:ENST00000618441.5:ENST00000508689.1:ENST00000514528.5:ENST00000504643.5:ENST00000514488.1:ENST00000503340.1:ENST00000504023.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	34	2	2.17608	3.141345	4.10661	0.0399023	0.0218783	0.143072	0.123836
chr12	76078435	76078535	5370163	0	-	0.28	[0,0.28]	chr12	512329	38	INTRON	INTRON	NAP1L1	ENSG00000187109.15	ENST00000618691.5:ENST00000393263.7:ENST00000431879.7:ENST00000547773.5:ENST00000544816.5:ENST00000542344.5:ENST00000535020.6:ENST00000549596.5:ENST00000552342.5:ENST00000548044.5:ENST00000550934.5:ENST00000551992.5:ENST00000548273.5:ENST00000551600.5:ENST00000547704.5:ENST00000549988.5:ENST00000547479.5:ENST00000549479.1:ENST00000551500.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	41	2	1.8986	3.141235	4.38387	0.0531512	0.0501911	0.179787	0.156383
chr4	67504304	67504404	2153090	0	-	0.28	[0,0.28]	chr4	211942	87	INTRON	INTRON	CENPC	ENSG00000145241.11	ENST00000273853.11:ENST00000513216.5:ENST00000506882.5:ENST00000510189.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	41	2	1.8986	3.141235	4.38387	0.0531512	0.0501911	0.179787	0.156383
chr5	160426022	160426121	2529325	0	+	0.272727	[0,0.28]	chr5	242019	13	INTRON	INTRON	PTTG1	ENSG00000164611.13	ENST00000352433.10:ENST00000520452.5:ENST00000393964.1:ENST00000519287.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	41	2	1.8986	3.141235	4.38387	0.0531512	0.0501911	0.179787	0.156383
chr7	105536064	105536127	3375723	0	+	0.253968	[0,0.28]	chr7	316047	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RINT1	ENSG00000135249.8	ENST00000467392.5:ENST00000482041.5:ENST00000493041.5:ENST00000257700.7:ENST00000497979.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	41	2	1.8986	3.141235	4.38387	0.0531512	0.0501911	0.179787	0.156383
chr2	144489792	144489892	1241502	0	-	0.37	(0.35,0.378]	chr2	131732	76	INTRON	INTRON	ZEB2	ENSG00000169554.23	ENST00000636471.1:ENST00000627532.3:ENST00000638128.1:ENST00000637304.1:ENST00000636179.1:ENST00000419938.5:ENST00000409487.7:ENST00000636732.2:ENST00000636026.2:ENST00000675069.1:ENST00000689298.1:ENST00000539609.7:ENST00000558170.6:ENST00000303660.8:ENST00000427902.5:ENST00000637267.2:ENST00000392861.6:ENST00000431672.4:ENST00000409211.5:ENST00000465308.5:ENST00000434448.5:ENST00000472146.5:ENST00000461784.3:ENST00000476394.5:ENST00000637591.2:ENST00000479735.1:ENST00000453352.5:ENST00000435831.5:ENST00000444559.5:ENST00000630572.2:ENST00000484313.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	238	2	2.62893	3.14123	3.65353	2.95351e-4	1.03595e-6	0.0159583	5.84056e-4
chr7	103348685	103348771	3373642	0	+	0.418605	(0.408,0.44]	chr7	315780	2	EXON_PSEUDO	EXON_PSEUDO:INTRON	PSMC2:RPS29P16	ENSG00000161057.13:ENSG00000235354.1	ENST00000678493.1:ENST00000457587.5:ENST00000679205.1:ENST00000679341.1:ENST00000435765.5:ENST00000679250.1:ENST00000679046.1:ENST00000292644.5:ENST00000677281.1:ENST00000425206.6:ENST00000678488.1:ENST00000452798.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:retained_intron:nonsense_mediated_decay:processed_pseudogene	4	45	2	1.60344	3.14119	4.67894	0.0387506	0.0087648	0.160156	0.0788605
chr14	64789439	64789537	5910432	0	-	0.438776	(0.408,0.44]	chr14	561435	19	INTRON	INTRON	SPTB	ENSG00000070182.21	ENST00000644917.1:ENST00000389722.7:ENST00000389720.4	protein_coding	protein_coding	protein_coding	protein_coding	3	72	2	2.45003	3.1411	3.83217	0.00990006	1.79883e-4	0.0838372	0.0116696
chr1	6696829	6696929	369024	0	-	0.35	(0.32,0.35]	chr1	43369	46	INTRON	INTRON	DNAJC11	ENSG00000007923.17	ENST00000377577.10:ENST00000690452.1:ENST00000685129.1:ENST00000472414.2:ENST00000688524.1:ENST00000686243.1:ENST00000690062.1:ENST00000689474.1:ENST00000294401.11:ENST00000426784.1:ENST00000473993.5:ENST00000685485.1:ENST00000691444.1:ENST00000688162.1:ENST00000485073.5:ENST00000460594.5:ENST00000693337.1:ENST00000465911.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	26	2	2.21917	3.14108	4.06299	0.0641245	0.0559439	0.199279	0.165463
chr1	11225880	11225979	378150	0	-	0.333333	(0.32,0.35]	chr1	44283	93	INTRON	INTRON	MTOR	ENSG00000198793.13	ENST00000361445.9	protein_coding	protein_coding	protein_coding	protein_coding	1	26	2	2.21917	3.14108	4.06299	0.0641245	0.0559439	0.199279	0.165463
chr1	19202215	19202315	386762	0	-	0.33	(0.32,0.35]	chr1	46142	4	SS3_PROX	SS3_PROX:INTRON	UBR4	ENSG00000127481.15	ENST00000375254.8	protein_coding	protein_coding	protein_coding	protein_coding	1	26	2	2.21917	3.14108	4.06299	0.0641245	0.0559439	0.199279	0.165463
chr1	44976036	44976135	437689	0	-	0.333333	(0.32,0.35]	chr1	52975	31	INTRON	INTRON	EIF2B3	ENSG00000070785.17	ENST00000620860.4:ENST00000360403.7:ENST00000372183.7:ENST00000480675.5:ENST00000477953.5:ENST00000372182.6:ENST00000487532.5:ENST00000497010.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	26	2	2.21917	3.14108	4.06299	0.0641245	0.0559439	0.199279	0.165463
chr10	63447312	63447412	4635205	0	-	0.33	(0.32,0.35]	chr10	426236	665	INTRON	INTRON	JMJD1C	ENSG00000171988.20	ENST00000399262.7:ENST00000633035.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	26	2	2.21917	3.14108	4.06299	0.0641245	0.0559439	0.199279	0.165463
chr10	68369686	68369786	4638767	0	-	0.35	(0.32,0.35]	chr10	426545	52	INTRON	INTRON	RUFY2	ENSG00000204130.14	ENST00000466493.5:ENST00000484083.5:ENST00000602465.6:ENST00000388768.6:ENST00000265865.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	26	2	2.21917	3.14108	4.06299	0.0641245	0.0559439	0.199279	0.165463
chr12	1067865	1067965	5058593	0	+	0.34	(0.32,0.35]	chr12	477638	389	INTRON	INTRON	ERC1	ENSG00000082805.21	ENST00000611180.5:ENST00000543086.7:ENST00000360905.9:ENST00000691018.1:ENST00000690948.1:ENST00000542302.6:ENST00000546231.6:ENST00000545318.3:ENST00000347735.10:ENST00000397203.7:ENST00000536573.7:ENST00000690222.1:ENST00000686476.1:ENST00000692909.1:ENST00000592048.5:ENST00000440394.7:ENST00000545948.5:ENST00000589028.6:ENST00000355446.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	26	2	2.21917	3.14108	4.06299	0.0641245	0.0559439	0.199279	0.165463
chr2	20257942	20258042	1075835	0	-	0.35	(0.32,0.35]	chr2	114943	3	SS5_PROX	SS5_PROX:INTRON	PUM2	ENSG00000055917.16	ENST00000338086.9:ENST00000361078.7:ENST00000440577.5	protein_coding	protein_coding	protein_coding	protein_coding	1	26	2	2.21917	3.14108	4.06299	0.0641245	0.0559439	0.199279	0.165463
chr2	229824400	229824500	1340676	0	-	0.34	(0.32,0.35]	chr2	140409	55	INTRON	INTRON	TRIP12	ENSG00000153827.14	ENST00000675453.1:ENST00000675903.1:ENST00000283943.9:ENST00000675423.1:ENST00000389044.8:ENST00000389045.7:ENST00000479037.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	26	2	2.21917	3.14108	4.06299	0.0641245	0.0559439	0.199279	0.165463
chr3	33811191	33811291	1394507	0	+	0.33	(0.32,0.35]	chr3	146027	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	PDCD6IP	ENSG00000170248.15	ENST00000457054.6:ENST00000648706.1:ENST00000435909.5:ENST00000430877.5:ENST00000413073.1:ENST00000307296.8:ENST00000477798.5:ENST00000498147.5:ENST00000484478.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	26	2	2.21917	3.14108	4.06299	0.0641245	0.0559439	0.199279	0.165463
chr4	713844	713944	1907868	0	+	0.33	(0.32,0.35]	chr4	191202	75	INTRON	INTRON	PCGF3	ENSG00000185619.18	ENST00000419774.5:ENST00000362003.9:ENST00000475288.5:ENST00000470161.6:ENST00000427463.5:ENST00000482726.5:ENST00000400151.6:ENST00000430644.5:ENST00000484141.5:ENST00000440452.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	26	2	2.21917	3.14108	4.06299	0.0641245	0.0559439	0.199279	0.165463
chr5	87292068	87292168	2411030	0	+	0.33	(0.32,0.35]	chr5	232377	224	INTRON	INTRON	RASA1	ENSG00000145715.15	ENST00000274376.11:ENST00000515800.6:ENST00000456692.6:ENST00000506290.1:ENST00000512763.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	26	2	2.21917	3.14108	4.06299	0.0641245	0.0559439	0.199279	0.165463
chr6	63666153	63666253	2883594	0	+	0.35	(0.32,0.35]	chr6	273559	190	INTRON	INTRON	PHF3	ENSG00000118482.12	ENST00000262043.8:ENST00000506783.5:ENST00000481385.6:ENST00000515594.5:ENST00000494284.6:ENST00000509876.5:ENST00000509330.5:ENST00000393387.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	26	2	2.21917	3.14108	4.06299	0.0641245	0.0559439	0.199279	0.165463
chr7	152113898	152113994	3450405	0	+	0.34375	(0.32,0.35]	chr7	322492	1	INTRON	INTRON	GALNT11	ENSG00000178234.13	ENST00000430044.7:ENST00000434507.5:ENST00000491061.1:ENST00000431940.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	26	2	2.21917	3.14108	4.06299	0.0641245	0.0559439	0.199279	0.165463
chr8	9689985	9690085	3700854	0	+	0.33	(0.32,0.35]	chr8	343221	88	INTRON	INTRON	TNKS	ENSG00000173273.16	ENST00000310430.11:ENST00000520408.5:ENST00000518281.5:ENST00000518027.5:ENST00000519392.5:ENST00000517989.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	26	2	2.21917	3.14108	4.06299	0.0641245	0.0559439	0.199279	0.165463
chr9	109047883	109047983	4311870	0	-	0.33	(0.32,0.35]	chr9	396315	55	INTRON	INTRON	TMEM245	ENSG00000106771.13	ENST00000374586.8:ENST00000413712.6:ENST00000491854.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	26	2	2.21917	3.14108	4.06299	0.0641245	0.0559439	0.199279	0.165463
chrX	155222980	155223079	7740605	0	+	0.333333	(0.32,0.35]	chrX	792579	23	INTRON	INTRON	VBP1	ENSG00000155959.12	ENST00000535916.5:ENST00000625964.2:ENST00000286428.7	protein_coding	protein_coding	protein_coding	protein_coding	1	26	2	2.21917	3.14108	4.06299	0.0641245	0.0559439	0.199279	0.165463
chr12	50423676	50423776	5136564	0	+	0.5	(0.476,0.515]	chr12	484374	24	INTRON	INTRON	LARP4	ENSG00000161813.23	ENST00000550522.5:ENST00000293618.12:ENST00000429001.7:ENST00000398473.7:ENST00000548174.5:ENST00000548697.5:ENST00000548993.5:ENST00000522085.5:ENST00000518444.5:ENST00000551886.5:ENST00000523389.5:ENST00000518561.5:ENST00000347328.9:ENST00000550260.1:ENST00000517559.5:ENST00000552445.1	protein_coding	protein_coding	protein_coding	protein_coding	2	54	2	2.69967	3.14105	3.58243	0.0195838	6.18479e-4	0.109483	0.0223951
chr5	54056579	54056679	2618371	0	-	0.32	(0.28,0.32]	chr5	248837	84	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	121	2	2.84714	3.140905	3.43467	0.00310758	1.38843e-4	0.0498063	0.0101519
chr13	98562694	98562794	5643649	0	-	0.55	(0.515,0.57]	chr13	537505	408	INTRON	INTRON	STK24	ENSG00000102572.15	ENST00000539966.6:ENST00000397517.6:ENST00000491878.5:ENST00000481288.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	46	2	3.09002	3.1409000000000002	3.19178	0.00491099	0.00289534	0.0609494	0.0494641
chr3	48077279	48077379	1687384	0	-	0.53	(0.515,0.57]	chr3	172280	610	INTRON	INTRON	MAP4	ENSG00000047849.22	ENST00000395734.7:ENST00000426837.6:ENST00000360240.10:ENST00000423088.5:ENST00000439356.2:ENST00000468075.2	protein_coding	protein_coding	protein_coding	protein_coding	2	46	2	3.09002	3.1409000000000002	3.19178	0.00491099	0.00289534	0.0609494	0.0494641
chr13	95186892	95186992	5638721	0	-	0.46	(0.44,0.476]	chr13	537113	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	ABCC4	ENSG00000125257.16	ENST00000645237.2:ENST00000643051.1:ENST00000643842.1:ENST00000646439.1:ENST00000643816.1:ENST00000536256.3:ENST00000643556.1:ENST00000629385.1:ENST00000642524.1:ENST00000645532.1:ENST00000644471.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	53	2	3.07862	3.14076	3.2029	0.0060153	0.00308681	0.0674604	0.0510391
chr11	10499675	10499765	4734402	0	+	0.622222	(0.57,1]	chr11	438392	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	AMPD3	ENSG00000133805.16	ENST00000444303.6:ENST00000396554.7:ENST00000534047.5:ENST00000396553.7:ENST00000529834.5:ENST00000528723.5:ENST00000529507.5:ENST00000530864.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	25	2	1.67986	3.140735	4.60161	0.0496395	0.00142229	0.174685	0.0340865
chr10	125055733	125055833	4713286	0	-	0.51	(0.476,0.515]	chr10	434897	162	INTRON	INTRON	CTBP2	ENSG00000175029.17	ENST00000337195.9:ENST00000411419.6:ENST00000494626.6:ENST00000531469.5:ENST00000460976.5:ENST00000476817.1:ENST00000530884.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	95	2	3.11021	3.1407049999999996	3.1712	5.02606e-4	4.95874e-4	0.0206925	0.020217099999999998
chr14	101969033	101969133	5820265	0	+	0.61	(0.57,1]	chr14	551975	37	INTRON	INTRON	DYNC1H1	ENSG00000197102.14	ENST00000360184.10:ENST00000684561.1:ENST00000680313.1:ENST00000679720.1:ENST00000680715.1:ENST00000681283.1:ENST00000681822.1:ENST00000679910.1:ENST00000681574.1:ENST00000645039.2:ENST00000645149.2:ENST00000680200.1:ENST00000680120.1:ENST00000644881.2:ENST00000681066.1:ENST00000680423.1:ENST00000681536.1:ENST00000679486.1:ENST00000681010.1:ENST00000679629.1:ENST00000681123.1:ENST00000680874.1:ENST00000680137.1:ENST00000643508.2:ENST00000680808.1:ENST00000681311.1:ENST00000681859.1:ENST00000643684.1:ENST00000643958.2:ENST00000680001.1:ENST00000681668.1:ENST00000645114.2:ENST00000681751.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	26	2	1.83769	3.1406750000000003	4.44366	0.0297587	0.00210922	0.12908	0.0425419
chr2	235549832	235549932	1041895	0	+	0.62	(0.57,1]	chr2	111222	249	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1:ENST00000402604.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	26	2	1.83769	3.1406750000000003	4.44366	0.0297587	0.00210922	0.12908	0.0425419
chr7	10540899	10540998	3482188	0	-	0.383838	(0.378,0.408]	chr7	325766	878	INTRON	INTRON	MGC4859	ENSG00000283117.1	ENST00000634803.1	lncRNA	lncRNA	lncRNA	lncRNA	2	55	2	2.90162	3.14066	3.3797	0.0113157	0.00154501	0.0886121	0.0362716
chr9	35060141	35060226	4247340	0	-	0.388235	(0.378,0.408]	chr9	390740	5	EXON_MRNA	EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	VCP	ENSG00000165280.18	ENST00000679902.1:ENST00000678465.1:ENST00000677257.1:ENST00000679800.1:ENST00000678018.1:ENST00000678650.1:ENST00000448530.6:ENST00000358901.11:ENST00000679647.1:ENST00000681335.1:ENST00000417448.2:ENST00000680916.1:ENST00000679599.1:ENST00000679862.1:ENST00000681690.1:ENST00000679204.2:ENST00000676836.2:ENST00000493886.5:ENST00000480327.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	95	2	1.77782	3.14062	4.50342	0.0388177	3.99854e-6	0.143072	0.00131958
chr1	180462213	180462313	595429	0	-	0.38	(0.378,0.408]	chr1	71198	316	INTRON	INTRON	ACBD6	ENSG00000230124.8	ENST00000645415.1:ENST00000642319.1:ENST00000367595.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	74	2	2.70298	3.1405950000000002	3.57821	0.00325723	9.60401e-4	0.0524329	0.0282401
chr19	12543631	12543730	7139879	0	-	0.353535	(0.35,0.378]	chr19	720335	17	INTRON	INTRON	ZNF564	ENSG00000249709.8	ENST00000339282.12:ENST00000427105.1:ENST00000596193.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	58	2	3.10863	3.140535	3.17244	0.00487788	0.00470896	0.0631419	0.0607461
chr6	30721573	30721671	2841350	0	+	0.744898	(0.57,1]	chr6	267065	1	UTR5	UTR5:EXON_MRNA:INTRON	TUBB	ENSG00000196230.14	ENST00000681435.1:ENST00000327892.13:ENST00000330914.7:ENST00000680530.1:ENST00000396389.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	52	2	2.88261	3.14045	3.39829	0.00118949	6.42666e-5	0.031662	0.00711194
chr1	150555134	150555231	223209	0	+	0.505155	(0.476,0.515]	chr1	25281	1	SS3_PROX	SS3_PROX:INTRON	ADAMTSL4	ENSG00000143382.16	ENST00000369039.9:ENST00000271643.9:ENST00000369041.9:ENST00000674043.1:ENST00000674058.1:ENST00000369038.6	protein_coding	protein_coding	protein_coding	protein_coding	5	114	2	2.84089	3.140415	3.43994	4.67054e-4	1.29236e-4	0.0195793	0.0103343
chr1	27554004	27554104	406973	0	-	0.43	(0.408,0.44]	chr1	49012	3	INTRON	INTRON	AHDC1	ENSG00000126705.15	ENST00000247087.10:ENST00000673934.1:ENST00000644989.1:ENST00000374011.6:ENST00000642416.1:ENST00000642245.1:ENST00000643308.1:ENST00000487743.3:ENST00000490295.2:ENST00000645669.1:ENST00000644550.1:ENST00000480033.3:ENST00000644119.1:ENST00000643219.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	32	2	1.85305	3.14009	4.42713	0.0543543	0.0173083	0.182243	0.104099
chr16	15985946	15986046	6308122	0	+	0.42	(0.408,0.44]	chr16	603510	358	INTRON	INTRON	ABCC1	ENSG00000103222.20	ENST00000574224.2:ENST00000678422.1:ENST00000677164.1:ENST00000399408.7:ENST00000572882.3:ENST00000399410.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	32	2	1.85305	3.14009	4.42713	0.0543543	0.0173083	0.182243	0.104099
chr18	36021589	36021689	6963076	0	-	0.44	(0.408,0.44]	chr18	689044	279	INTRON	INTRON	RPRD1A	ENSG00000141425.18	ENST00000399022.9:ENST00000590898.5:ENST00000357384.8:ENST00000588737.5	protein_coding	protein_coding	protein_coding	protein_coding	2	32	2	1.85305	3.14009	4.42713	0.0543543	0.0173083	0.182243	0.104099
chr22	41110595	41110694	7521674	0	+	0.434343	(0.408,0.44]	chr22	768519	21	INTRON	INTRON	EP300	ENSG00000100393.14	ENST00000263253.9:ENST00000674155.1:ENST00000637592.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	32	2	1.85305	3.14009	4.42713	0.0543543	0.0173083	0.182243	0.104099
chr6	125008673	125008754	2951938	0	+	0.419753	(0.408,0.44]	chr6	277691	1	SS3_PROX	SS3_PROX:INTRON	RNF217	ENSG00000146373.17	ENST00000521654.7:ENST00000560949.5:ENST00000519565.5:ENST00000454842.2:ENST00000368414.6:ENST00000519799.5:ENST00000359704.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	32	2	1.85305	3.14009	4.42713	0.0543543	0.0173083	0.182243	0.104099
chr9	98827141	98827241	4173848	0	+	0.42	(0.408,0.44]	chr9	380366	2	SS5_PROX	SS5_PROX:INTRON	GALNT12	ENSG00000119514.7	ENST00000375011.4:ENST00000610463.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	32	2	1.85305	3.14009	4.42713	0.0543543	0.0173083	0.182243	0.104099
chr7	131103070	131103170	3642630	0	-	0.56	(0.515,0.57]	chr7	338763	147	INTRON	INTRON	LINC-PINT	ENSG00000231721.7	ENST00000647388.1:ENST00000423414.5:ENST00000433079.5:ENST00000642156.1:ENST00000646429.1:ENST00000451786.5:ENST00000645248.1:ENST00000642602.1:ENST00000644804.1:ENST00000647288.1:ENST00000643135.1:ENST00000643855.1:ENST00000643874.1:ENST00000644188.1:ENST00000431189.1:ENST00000642483.1:ENST00000429901.2	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	3	61	2	2.87626	3.1400699999999997	3.40388	0.00142538	0.00136224	0.0340865	0.0339121
chr17	40220938	40221038	6609480	0	+	0.48	(0.476,0.515]	chr17	643733	4	SS5_PROX	SS5_PROX:INTRON	WIPF2	ENSG00000171475.14	ENST00000323571.9:ENST00000583268.1:ENST00000494757.5:ENST00000582781.5:ENST00000585043.5:ENST00000394103.7:ENST00000583130.5:ENST00000584296.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	32	2	1.8388	3.14004	4.44128	0.0564473	0.0151924	0.184423	0.0994339
chr17	78181192	78181292	6844623	0	-	0.48	(0.476,0.515]	chr17	677213	52	INTRON	INTRON	TK1	ENSG00000167900.12	ENST00000301634.12:ENST00000588734.5:ENST00000590862.5:ENST00000590430.5:ENST00000586613.1:ENST00000592126.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	32	2	1.8388	3.14004	4.44128	0.0564473	0.0151924	0.184423	0.0994339
chr4	128079723	128079820	2042782	0	+	0.484536	(0.476,0.515]	chr4	202862	14	INTRON	INTRON	LARP1B	ENSG00000138709.19	ENST00000512292.5:ENST00000326639.11:ENST00000508819.5:ENST00000394288.7:ENST00000432347.6:ENST00000649983.1:ENST00000650359.1:ENST00000648358.1:ENST00000507377.1	protein_coding	protein_coding	protein_coding	protein_coding	2	32	2	1.8388	3.14004	4.44128	0.0564473	0.0151924	0.184423	0.0994339
chr6	24776224	24776324	2836471	0	+	0.48	(0.476,0.515]	chr6	265890	4	SS5_PROX	SS5_PROX:INTRON	GMNN	ENSG00000112312.10	ENST00000356509.7:ENST00000230056.8:ENST00000468943.1:ENST00000620958.4:ENST00000378054.6:ENST00000476555.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	32	2	1.8388	3.14004	4.44128	0.0564473	0.0151924	0.184423	0.0994339
chr8	23025843	23025942	3923503	0	-	0.50505	(0.476,0.515]	chr8	359071	12	INTRON	INTRON	TNFRSF10B	ENSG00000120889.13	ENST00000276431.9:ENST00000523752.5:ENST00000347739.3:ENST00000523504.5:ENST00000520109.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	32	2	1.8388	3.14004	4.44128	0.0564473	0.0151924	0.184423	0.0994339
chr9	78024215	78024315	4271872	0	-	0.48	(0.476,0.515]	chr9	392880	1015	INTRON	INTRON	GNAQ	ENSG00000156052.11	ENST00000286548.9:ENST00000411677.1	protein_coding	protein_coding	protein_coding	protein_coding	2	32	2	1.8388	3.14004	4.44128	0.0564473	0.0151924	0.184423	0.0994339
chr9	130857784	130857884	4215304	0	+	0.48	(0.476,0.515]	chr9	386442	23	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000318560.6	protein_coding	protein_coding	protein_coding	protein_coding	2	32	2	1.8388	3.14004	4.44128	0.0564473	0.0151924	0.184423	0.0994339
chr15	72480807	72480907	6059225	0	+	0.52	(0.515,0.57]	chr15	576852	54	INTRON	INTRON	ARIH1	ENSG00000166233.15	ENST00000379887.9:ENST00000570085.5:ENST00000564062.1:ENST00000567762.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	23	2	2.23915	3.1400050000000004	4.04086	0.0596178	0.0197045	0.16883600000000001	0.120063
chr16	1821411	1821511	6429897	0	-	0.57	(0.515,0.57]	chr16	618302	10	INTRON	INTRON	HAGH	ENSG00000063854.13	ENST00000564445.5:ENST00000397356.8:ENST00000455446.6:ENST00000397353.6:ENST00000566709.5:ENST00000569339.1:ENST00000569700.5:ENST00000567190.5:ENST00000564518.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	23	2	2.23915	3.1400050000000004	4.04086	0.0596178	0.0197045	0.16883600000000001	0.120063
chr16	58562654	58562754	6495690	0	-	0.53	(0.515,0.57]	chr16	628558	19	INTRON	INTRON	CNOT1	ENSG00000125107.19	ENST00000317147.10:ENST00000569240.5:ENST00000567188.5:ENST00000441024.6:ENST00000569882.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	23	2	2.23915	3.1400050000000004	4.04086	0.0596178	0.0197045	0.16883600000000001	0.120063
chr16	89891210	89891306	6422618	0	+	0.5625	(0.515,0.57]	chr16	616751	7	INTRON	INTRON	TCF25	ENSG00000141002.20	ENST00000640279.1:ENST00000263347.11:ENST00000263346.13:ENST00000561958.5:ENST00000565196.5:ENST00000564652.5:ENST00000568412.5:ENST00000566751.5:ENST00000562256.5:ENST00000568409.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	23	2	2.23915	3.1400050000000004	4.04086	0.0596178	0.0197045	0.16883600000000001	0.120063
chr17	37199144	37199243	6760916	0	-	0.565657	(0.515,0.57]	chr17	664739	54	INTRON	INTRON	ACACA	ENSG00000278540.5	ENST00000616317.5:ENST00000614428.4:ENST00000612895.4:ENST00000619546.4:ENST00000617649.4	protein_coding	protein_coding	protein_coding	protein_coding	1	23	2	2.23915	3.1400050000000004	4.04086	0.0596178	0.0197045	0.16883600000000001	0.120063
chr17	56911408	56911506	6799121	0	-	0.530612	(0.515,0.57]	chr17	671279	25	INTRON	INTRON	TRIM25	ENSG00000121060.19	ENST00000648772.1:ENST00000682766.1:ENST00000316881.9:ENST00000537230.3:ENST00000572021.6:ENST00000574997.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	23	2	2.23915	3.1400050000000004	4.04086	0.0596178	0.0197045	0.16883600000000001	0.120063
chr2	96841659	96841759	1181673	0	-	0.53	(0.515,0.57]	chr2	126613	2	SS5_PROX	SS5_PROX:INTRON	ANKRD39	ENSG00000213337.9	ENST00000443120.5	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	1	23	2	2.23915	3.1400050000000004	4.04086	0.0596178	0.0197045	0.16883600000000001	0.120063
chr2	222640661	222640761	1332963	0	-	0.55	(0.515,0.57]	chr2	139897	4	SS5_PROX	SS5_PROX:INTRON	FARSB	ENSG00000116120.11	ENST00000281828.8	protein_coding	protein_coding	protein_coding	protein_coding	1	23	2	2.23915	3.1400050000000004	4.04086	0.0596178	0.0197045	0.16883600000000001	0.120063
chr22	47803079	47803179	7541089	0	+	0.52	(0.515,0.57]	chr22	770766	39	INTRON	INTRON	ENSG00000224271	ENSG00000224271.7	ENST00000664761.1:ENST00000650683.1:ENST00000651536.1:ENST00000652656.1:ENST00000651445.1:ENST00000423737.5:ENST00000650660.1:ENST00000651056.1:ENST00000652611.1:ENST00000652399.1:ENST00000652123.1:ENST00000652505.1:ENST00000652030.2:ENST00000651403.1:ENST00000652228.1:ENST00000651124.1:ENST00000650972.1:ENST00000651637.1:ENST00000651003.1:ENST00000651948.2:ENST00000651293.1:ENST00000651939.1:ENST00000650787.1:ENST00000651517.1:ENST00000651662.1:ENST00000651638.1:ENST00000670853.1:ENST00000652080.1:ENST00000651294.1:ENST00000652164.1:ENST00000651538.1:ENST00000651033.1:ENST00000651584.1	lncRNA	lncRNA	lncRNA	lncRNA	1	23	2	2.23915	3.1400050000000004	4.04086	0.0596178	0.0197045	0.16883600000000001	0.120063
chr4	169597499	169597599	2297011	0	-	0.54	(0.515,0.57]	chr4	222273	63	INTRON	INTRON	NEK1	ENSG00000137601.18	ENST00000687054.1:ENST00000507142.6:ENST00000686697.1:ENST00000688934.1:ENST00000685111.1:ENST00000687528.1:ENST00000687643.1:ENST00000439128.6:ENST00000511633.5:ENST00000510533.5:ENST00000512193.5:ENST00000693604.1:ENST00000692450.1:ENST00000687219.1:ENST00000693085.1:ENST00000509912.5:ENST00000690631.1:ENST00000688487.1:ENST00000688653.1:ENST00000692868.1:ENST00000692218.1:ENST00000505119.2:ENST00000510108.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	23	2	2.23915	3.1400050000000004	4.04086	0.0596178	0.0197045	0.16883600000000001	0.120063
chr7	102556462	102556562	3588714	0	-	0.53	(0.515,0.57]	chr7	335032	107	INTRON	INTRON	POLR2J3	ENSG00000168255.20	ENST00000489144.5:ENST00000464525.5:ENST00000379340.9:ENST00000486319.5:ENST00000503564.5:ENST00000511773.5:ENST00000513506.6:ENST00000508848.5:ENST00000504677.5:ENST00000506060.5:ENST00000502415.5:ENST00000507355.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	74	2	2.4745	3.13985	3.8052	0.00279583	1.67082e-4	0.0469265	0.0111796
chr13	95172821	95172921	5638578	0	-	0.54	(0.515,0.57]	chr13	537099	18	INTRON	INTRON	ABCC4	ENSG00000125257.16	ENST00000645237.2:ENST00000643051.1:ENST00000643842.1:ENST00000646439.1:ENST00000643816.1:ENST00000536256.3:ENST00000643556.1:ENST00000629385.1:ENST00000642524.1:ENST00000645532.1:ENST00000644471.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	43	2	1.43029	3.139825	4.84936	0.0645632	0.00146032	0.179192	0.0349875
chr21	43932943	43933043	7414471	0	+	0.53	(0.515,0.57]	chr21	755706	71	INTRON	INTRON	AGPAT3	ENSG00000160216.21	ENST00000291572.13:ENST00000448287.5:ENST00000398061.5:ENST00000327505.6:ENST00000445582.5:ENST00000398063.6	protein_coding	protein_coding	protein_coding	protein_coding	4	43	2	1.43029	3.139825	4.84936	0.0645632	0.00146032	0.179192	0.0349875
chr1	19912745	19912845	41051	0	+	0.3	(0.28,0.32]	chr1	4832	51	UTR3	UTR3:EXON_MRNA	OTUD3	ENSG00000169914.6	ENST00000375120.4	protein_coding	protein_coding	protein_coding	protein_coding	6	142	2	2.70116	3.13962	3.57808	0.00141407	2.6235e-4	0.0340865	0.0143317
chrX	71409148	71409248	7678675	0	+	0.4	(0.378,0.408]	chrX	786269	6	INTRON	INTRON	TAF1	ENSG00000147133.17	ENST00000683202.1:ENST00000373790.9:ENST00000423759.6:ENST00000683782.1:ENST00000683668.1:ENST00000276072.9:ENST00000463163.5:ENST00000373775.8:ENST00000485087.6:ENST00000437147.8:ENST00000683358.1:ENST00000682124.1:ENST00000461764.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	13	253	2	2.62235	3.13956	3.65677	2.96121e-5	8.78114e-6	0.00432778	0.00228081
chr11	74252215	74252312	4827348	0	+	0.381443	(0.378,0.408]	chr11	450518	1	INTRON	INTRON	PPME1	ENSG00000214517.10	ENST00000328257.13:ENST00000398427.6:ENST00000543525.3:ENST00000541340.5:ENST00000538501.5:ENST00000539021.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	74	2	2.5938	3.1394849999999996	3.68517	0.00614976	3.90172e-4	0.0676501	0.0177751
chr14	100351498	100351596	5968644	0	-	0.336735	(0.32,0.35]	chr14	567074	43	INTRON	INTRON	WARS1	ENSG00000140105.18	ENST00000392882.7:ENST00000358655.8:ENST00000355338.6:ENST00000344102.9:ENST00000557135.5:ENST00000556645.5:ENST00000554950.1:ENST00000553395.5:ENST00000556504.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	47	2	2.10695	3.13938	4.17181	0.04531	0.0127483	0.149888	0.0987441
chr18	73245202	73245301	6988425	0	-	0.434343	(0.408,0.44]	chr18	691704	441	INTRON	INTRON	LINC02864	ENSG00000263711.6	ENST00000584544.5:ENST00000581011.5:ENST00000581862.6:ENST00000669547.1:ENST00000661525.1:ENST00000583405.5	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	3	72	2	3.12458	3.13936	3.15414	0.00469847	4.61817e-4	0.0600108	0.0194611
chr17	39391673	39391772	6766553	0	-	0.30303	(0.28,0.32]	chr17	665497	481	INTRON	INTRON	FBXL20	ENSG00000108306.13	ENST00000264658.11:ENST00000583610.5:ENST00000394294.7:ENST00000577399.5:ENST00000647139.1	protein_coding	protein_coding	protein_coding	protein_coding	2	39	2	2.13651	3.1393250000000004	4.14214	0.0579756	0.0265696	0.167723	0.134088
chr3	47141948	47142048	1681384	0	-	0.32	(0.28,0.32]	chr3	171624	149	INTRON	INTRON	SETD2	ENSG00000181555.22	ENST00000691544.1:ENST00000638947.2:ENST00000409792.4:ENST00000412450.1	protein_coding	protein_coding	protein_coding	protein_coding	2	39	2	2.13651	3.1393250000000004	4.14214	0.0579756	0.0265696	0.167723	0.134088
chr1	50953672	50953772	452190	0	-	0.42	(0.408,0.44]	chr1	54267	953	INTRON	INTRON	FAF1	ENSG00000185104.21	ENST00000396153.7:ENST00000487898.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	35	2	1.74775	3.139315	4.53088	0.0735403	0.00669275	0.190238	0.0738715
chr14	22948234	22948333	5841771	0	-	0.414141	(0.408,0.44]	chr14	555312	1	SS3_PROX	SS3_PROX:INTRON	HAUS4	ENSG00000092036.19	ENST00000206474.11:ENST00000490506.5:ENST00000541587.6:ENST00000554446.5:ENST00000347758.6:ENST00000342454.12:ENST00000555367.5:ENST00000555986.5:ENST00000553859.5:ENST00000555040.5:ENST00000556915.5:ENST00000554349.5:ENST00000553794.5:ENST00000554373.5:ENST00000554651.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	35	2	1.74775	3.139315	4.53088	0.0735403	0.00669275	0.190238	0.0738715
chr16	28381385	28381480	6468490	0	-	0.431579	(0.408,0.44]	chr16	624622	2	INTRON	INTRON	EIF3CL	ENSG00000205609.13	ENST00000398944.7:ENST00000380876.5	protein_coding	protein_coding	protein_coding	protein_coding	2	35	2	1.74775	3.139315	4.53088	0.0735403	0.00669275	0.190238	0.0738715
chr3	10320108	10320208	1613315	0	-	0.41	(0.408,0.44]	chr3	166628	2	SS5_PROX	SS5_PROX:INTRON	SEC13	ENSG00000157020.18	ENST00000350697.8:ENST00000337354.8:ENST00000397109.7:ENST00000397117.5:ENST00000383801.6:ENST00000397105.7:ENST00000431352.1:ENST00000397102.5:ENST00000397101.5:ENST00000397099.1:ENST00000428626.5:ENST00000445064.1:ENST00000432213.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	35	2	1.74775	3.139315	4.53088	0.0735403	0.00669275	0.190238	0.0738715
chr12	4279716	4279815	5067469	0	+	0.414141	(0.408,0.44]	chr12	478287	4	INTRON	INTRON	CCND2	ENSG00000118971.9	ENST00000676411.1:ENST00000676279.1:ENST00000261254.8:ENST00000675880.1:ENST00000536537.2:ENST00000675468.1:ENST00000536795.1:ENST00000541542.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	87	2	2.48326	3.1393	3.79534	0.00324772	2.17043e-4	0.0508595	0.0129235
chr2	65410196	65410296	1143973	0	-	0.42	(0.408,0.44]	chr2	122242	326	INTRON	INTRON	SPRED2	ENSG00000198369.10	ENST00000356388.9:ENST00000440972.1	protein_coding	protein_coding	protein_coding	protein_coding	2	34	2	2.27464	3.139245	4.00385	0.0454568	0.0158016	0.149888	0.109464
chr7	6049344	6049411	3476149	0	-	0.432836	(0.408,0.44]	chr7	325232	1	INTRON	INTRON	EIF2AK1	ENSG00000086232.13	ENST00000199389.11:ENST00000431744.5:ENST00000463213.5:ENST00000446699.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	34	2	2.27464	3.139245	4.00385	0.0454568	0.0158016	0.149888	0.109464
chr16	80995133	80995232	6530576	0	-	0.363636	(0.35,0.378]	chr16	632657	28	INTRON	INTRON	CMC2	ENSG00000103121.9	ENST00000219400.8:ENST00000563779.5:ENST00000486645.5:ENST00000570195.5:ENST00000566047.5:ENST00000561614.5:ENST00000569187.5:ENST00000570086.5:ENST00000564249.5:ENST00000565650.5:ENST00000567593.5:ENST00000568228.5:ENST00000565914.5:ENST00000565108.5:ENST00000565925.5:ENST00000564174.5:ENST00000565613.5:ENST00000569666.5:ENST00000562713.3:ENST00000562828.5:ENST00000630396.1:ENST00000565514.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	38	2	1.87717	3.1392249999999997	4.40128	0.0555068	0.0120289	0.165463	0.0962115
chr7	128771332	128771431	3408707	0	+	0.333333	(0.32,0.35]	chr7	318467	23	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	CALU	ENSG00000128595.17	ENST00000535011.6:ENST00000542996.6:ENST00000249364.9:ENST00000493278.1	protein_coding	protein_coding	protein_coding	protein_coding	9	158	2	2.11103	3.13908	4.16713	0.00141995	8.85881e-5	0.034662	0.00842626
chr2	24500188	24500288	709346	0	+	0.48	(0.476,0.515]	chr2	82200	76	INTRON	INTRON	NCOA1	ENSG00000084676.16	ENST00000348332.8:ENST00000496333.5:ENST00000406961.5:ENST00000469850.5:ENST00000405141.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	72	2	2.53671	3.139075	3.74144	0.00624027	4.08784e-4	0.0718843	0.0185763
chr1	220202774	220202874	640124	0	-	0.5	(0.476,0.515]	chr1	75542	4	SS3_PROX	SS3_PROX:INTRON	RAB3GAP2	ENSG00000118873.17	ENST00000358951.7:ENST00000687065.1:ENST00000686381.1:ENST00000687647.1:ENST00000692972.1:ENST00000690315.1:ENST00000691862.1:ENST00000691661.1:ENST00000690373.1:ENST00000693602.1:ENST00000692813.1:ENST00000685286.1:ENST00000688035.1:ENST00000685664.1:ENST00000690824.1:ENST00000687394.1:ENST00000690379.1:ENST00000478976.1:ENST00000237724.9:ENST00000689820.1:ENST00000484658.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	34	2	2.26034	3.139055	4.01777	0.0411361	0.0166235	0.1451	0.110511
chr17	46030597	46030695	6783219	0	-	0.479592	(0.476,0.515]	chr17	669144	8	UTR3	UTR3:EXON_MRNA	KANSL1	ENSG00000120071.15	ENST00000574590.6:ENST00000572904.6:ENST00000432791.7:ENST00000572218.5:ENST00000575318.6:ENST00000638275.1:ENST00000576870.5:ENST00000262419.10:ENST00000648792.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	34	2	2.26034	3.139055	4.01777	0.0411361	0.0166235	0.1451	0.110511
chr3	47970784	47970884	1686312	0	-	0.33	(0.32,0.35]	chr3	172245	390	INTRON	INTRON	MAP4	ENSG00000047849.22	ENST00000683076.1:ENST00000395734.7:ENST00000426837.6:ENST00000360240.10:ENST00000423088.5:ENST00000633710.1	protein_coding	protein_coding	protein_coding	protein_coding	3	83	2	2.66302	3.139045	3.61507	0.00542632	6.48785e-4	0.0645052	0.0230814
chr5	133959493	133959580	2725627	0	-	0.310345	(0.28,0.32]	chr5	256404	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	C5orf15	ENSG00000113583.8	ENST00000231512.5:ENST00000507191.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	146	2	3.03731	3.138825	3.24034	0.0014867	8.13486e-5	0.035	0.00755207
chr6	157907198	157907296	3016610	0	+	0.336735	(0.32,0.35]	chr6	281403	11	EXON_MRNA	EXON_MRNA:INTRON	SNX9	ENSG00000130340.17	ENST00000680863.1:ENST00000679814.1:ENST00000680464.1:ENST00000681186.1:ENST00000679732.1:ENST00000681183.1:ENST00000681534.1:ENST00000681651.1:ENST00000680089.1:ENST00000680078.1:ENST00000680974.1:ENST00000680095.1:ENST00000680015.1:ENST00000681138.1:ENST00000392185.8:ENST00000679790.1:ENST00000680495.1:ENST00000679691.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	82	2	2.96232	3.1388249999999998	3.31533	0.00323121	0.00118924	0.0507087	0.031662
chr17	51262099	51262195	6627589	0	+	0.583333	(0.57,1]	chr17	647336	8	INTRON	INTRON	UTP18	ENSG00000011260.14	ENST00000225298.12	protein_coding	protein_coding	protein_coding	protein_coding	3	40	2	3.04906	3.13881	3.22856	0.00205928	4.97245e-4	0.0420839	0.0206993
chr7	156888569	156888669	3687972	0	-	0.42	(0.408,0.44]	chr7	342096	513	INTRON	INTRON	LMBR1	ENSG00000105983.23	ENST00000353442.10:ENST00000415428.5:ENST00000454132.5:ENST00000434503.5:ENST00000430278.5:ENST00000434278.5:ENST00000444719.5:ENST00000461469.5:ENST00000414218.1:ENST00000434453.1:ENST00000498034.5:ENST00000433968.5:ENST00000485985.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	71	2	2.86612	3.1387799999999997	3.41144	0.00178336	0.00157924	0.0379201	0.0366789
chr1	235319317	235319417	663774	0	-	0.55	(0.515,0.57]	chr1	78552	582	INTRON	INTRON	ARID4B	ENSG00000054267.22	ENST00000349213.7:ENST00000366603.6:ENST00000264183.9:ENST00000421364.5:ENST00000491632.5:ENST00000418304.1:ENST00000466653.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	73	2	2.57697	3.138635	3.7003	0.00153959	3.73715e-4	0.0362709	0.0179087
chr3	52686345	52686425	1429180	0	+	0.5375	(0.515,0.57]	chr3	150966	4	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GNL3	ENSG00000163938.17	ENST00000479230.5:ENST00000468146.5:ENST00000394799.6:ENST00000468885.1:ENST00000418458.6:ENST00000492349.5:ENST00000462550.5:ENST00000496254.5:ENST00000474423.1:ENST00000460073.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	61	2	2.78208	3.1385199999999998	3.49496	0.00209264	9.61701e-4	0.0424943	0.0282401
chr3	152464082	152464181	1536958	0	+	0.191919	[0,0.28]	chr3	160067	18	UTR3	UTR3:EXON_MRNA	MBNL1	ENSG00000152601.18	ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000324210.10:ENST00000493459.5:ENST00000545754.5:ENST00000357472.7:ENST00000324196.9:ENST00000498502.5:ENST00000463374.5:ENST00000485910.5:ENST00000497971.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	75	2	2.97616	3.138495	3.30083	0.0128425	0.00319246	0.0926667	0.0520345
chr4	32047090	32047190	1941919	0	+	0.28	[0,0.28]	chr4	194727	489	INTRON	INTRON	LINC02506	ENSG00000251129.3	ENST00000662669.1:ENST00000665582.2:ENST00000667252.2:ENST00000660373.2:ENST00000684849.1:ENST00000513211.2:ENST00000659613.1:ENST00000657576.1:ENST00000686730.1:ENST00000685407.1:ENST00000685455.1:ENST00000655951.1	lncRNA	lncRNA	lncRNA	lncRNA	3	103	2	2.69869	3.1383900000000002	3.57809	0.00643225	0.00109779	0.0697113	0.0303708
chr1	10093663	10093763	19735	0	+	0.41	(0.408,0.44]	chr1	1847	207	INTRON	INTRON	UBE4B	ENSG00000130939.20	ENST00000672724.1:ENST00000253251.12:ENST00000343090.11	protein_coding	protein_coding	protein_coding	protein_coding	2	36	2	1.94273	3.138365	4.334	0.0456237	0.011982	0.149888	0.0962115
chr12	110381151	110381251	5408962	0	-	0.43	(0.408,0.44]	chr12	516421	21	INTRON	INTRON	ANAPC7	ENSG00000196510.14	ENST00000455511.9:ENST00000552087.1:ENST00000450008.3:ENST00000471602.6:ENST00000548234.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	36	2	1.94273	3.138365	4.334	0.0456237	0.011982	0.149888	0.0962115
chr17	7666901	7666992	6719324	0	-	0.428571	(0.408,0.44]	chr17	659132	1	UTR3	UTR3:EXON_MRNA:INTRON	TP53	ENSG00000141510.18	ENST00000413465.6:ENST00000635293.1:ENST00000359597.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	36	2	1.94273	3.138365	4.334	0.0456237	0.011982	0.149888	0.0962115
chr22	46599287	46599387	7534347	0	+	0.42	(0.408,0.44]	chr22	770418	216	INTRON	INTRON	GRAMD4	ENSG00000075240.17	ENST00000447351.5:ENST00000431155.1	protein_coding	protein_coding	protein_coding	protein_coding	2	36	2	1.94273	3.138365	4.334	0.0456237	0.011982	0.149888	0.0962115
chr2	171130554	171130654	1263796	0	-	0.36	(0.35,0.378]	chr2	133921	123	INTRON	INTRON	TLK1	ENSG00000198586.14	ENST00000431350.7:ENST00000360843.7:ENST00000359766.7:ENST00000521943.5:ENST00000409443.6:ENST00000413010.5:ENST00000470340.1:ENST00000466220.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	41	2	1.71046	3.13798	4.5655	0.0441269	0.0155464	0.162255	0.100909
chr11	57768325	57768425	4793196	0	+	0.3	(0.28,0.32]	chr11	443717	38	INTRON	INTRON	ENSG00000288534:CTNND1	ENSG00000288534.1:ENSG00000198561.16	ENST00000673781.1:ENST00000673810.1:ENST00000674116.1:ENST00000674060.1:ENST00000524630.5:ENST00000529919.5:ENST00000533189.1:ENST00000682741.1:ENST00000358694.10:ENST00000361332.8:ENST00000361391.10:ENST00000361796.9:ENST00000415361.6:ENST00000426142.6:ENST00000428599.6:ENST00000525902.5:ENST00000526357.5:ENST00000526772.5:ENST00000527467.5:ENST00000528232.5:ENST00000528621.5:ENST00000529526.5:ENST00000529873.5:ENST00000529986.5:ENST00000530094.5:ENST00000530748.5:ENST00000531014.5:ENST00000532245.5:ENST00000532463.5:ENST00000532649.5:ENST00000532787.5:ENST00000532844.5:ENST00000533667.5:ENST00000534579.5:ENST00000399050.10:ENST00000526938.5:ENST00000531007.2:ENST00000674015.1:ENST00000673826.1:ENST00000673683.1:ENST00000674106.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	67	2	2.73077	3.137955	3.54514	0.0220748	0.00100603	0.115395	0.0292285
chr11	70436408	70436496	4822018	0	+	0.409091	(0.408,0.44]	chr11	449689	1	UTR3	UTR3:EXON_MRNA	CTTN	ENSG00000085733.16	ENST00000346329.7:ENST00000301843.13:ENST00000376561.7:ENST00000529736.5	protein_coding	protein_coding	protein_coding	protein_coding	10	185	2	2.2325	3.13788	4.04326	9.13081e-4	1.92737e-6	0.0278396	8.42956e-4
chr4	6675260	6675358	1921504	0	+	0.367347	(0.35,0.378]	chr4	192960	8	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ENSG00000170846	ENSG00000170846.17	ENST00000645429.1:ENST00000307533.10:ENST00000635031.1:ENST00000444232.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	127	2	2.97949	3.137855	3.29622	4.02507e-4	2.133e-4	0.0185763	0.0128205
chr11	57746250	57746350	4792972	0	+	0.34	(0.32,0.35]	chr11	443700	28	INTRON	INTRON	ENSG00000288534	ENSG00000288534.1	ENST00000673781.1:ENST00000673810.1:ENST00000674116.1:ENST00000674060.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	1	29	2	2.23182	3.13773	4.04364	0.068598	0.034181	0.184298	0.146815
chr6	98895676	98895776	3165058	0	-	0.33	(0.32,0.35]	chr6	295187	147	INTRON	INTRON	FBXL4	ENSG00000112234.9	ENST00000369244.7:ENST00000229971.2	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	2.23182	3.13773	4.04364	0.068598	0.034181	0.184298	0.146815
chr8	105410381	105410481	3838161	0	+	0.33	(0.32,0.35]	chr8	354041	221	INTRON	INTRON	ZFPM2	ENSG00000169946.14	ENST00000518180.1:ENST00000407775.7:ENST00000520492.5:ENST00000520027.5:ENST00000524235.5:ENST00000511341.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	29	2	2.23182	3.13773	4.04364	0.068598	0.034181	0.184298	0.146815
chrX	9713910	9714008	7621175	0	+	0.326531	(0.32,0.35]	chrX	780055	7	INTRON	INTRON	TBL1X	ENSG00000101849.18	ENST00000407597.7:ENST00000380961.5:ENST00000424279.6:ENST00000645353.2:ENST00000645686.1:ENST00000646640.1:ENST00000683056.1:ENST00000647060.1	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	2.23182	3.13773	4.04364	0.068598	0.034181	0.184298	0.146815
chrX	74279605	74279704	7841477	0	-	0.333333	(0.32,0.35]	chrX	799734	16	EXON_LNCRNA	EXON_LNCRNA:INTRON	FTX	ENSG00000230590.12	ENST00000603672.5:ENST00000430772.6:ENST00000602776.6:ENST00000638681.1:ENST00000652319.1:ENST00000661133.1:ENST00000652071.1:ENST00000602812.6:ENST00000651703.1:ENST00000653018.1:ENST00000658448.1:ENST00000662240.1:ENST00000652527.1:ENST00000651451.1:ENST00000657611.1:ENST00000660481.1:ENST00000659574.1:ENST00000661084.1:ENST00000662494.1:ENST00000670936.1:ENST00000602420.6:ENST00000658203.1:ENST00000638985.1:ENST00000691187.1:ENST00000603037.2:ENST00000687056.1:ENST00000654870.2:ENST00000652540.1:ENST00000652331.2:ENST00000652013.1:ENST00000657070.1:ENST00000665069.1:ENST00000651936.1:ENST00000652496.1:ENST00000653874.2:ENST00000661335.1:ENST00000664123.1:ENST00000658439.1:ENST00000666535.1:ENST00000652970.1:ENST00000423992.3:ENST00000665313.2:ENST00000651140.1:ENST00000693483.1:ENST00000656041.1:ENST00000657327.1:ENST00000664343.1:ENST00000656977.1:ENST00000671343.1:ENST00000659407.1:ENST00000671067.1:ENST00000660829.1:ENST00000671385.1:ENST00000418855.6:ENST00000602576.5:ENST00000660224.1:ENST00000662864.1:ENST00000429124.6:ENST00000668224.1:ENST00000659390.1:ENST00000455395.6:ENST00000659012.1:ENST00000664803.1:ENST00000654373.1	lncRNA	lncRNA	lncRNA	lncRNA	1	29	2	2.23182	3.13773	4.04364	0.068598	0.034181	0.184298	0.146815
chr15	82368463	82368563	6075665	0	+	0.36	(0.35,0.378]	chr15	578727	127	INTRON	INTRON	UBE2Q2P2	ENSG00000259429.5	ENST00000618775.4	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	4	93	2	2.83102	3.1376850000000003	3.44435	0.00179102	5.35542e-4	0.0380316	0.0209215
chr11	9282631	9282730	4909105	0	-	0.59596	(0.57,1]	chr11	460125	21	UTR3	UTR3:EXON_MRNA:INTRON	TMEM41B	ENSG00000166471.11	ENST00000524543.5:ENST00000528080.6:ENST00000299596.8:ENST00000611268.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	103	2	2.59607	3.137655	3.67924	1.75753e-5	9.71527e-6	0.00319082	0.00240387
chr1	65311437	65311537	136109	0	+	0.57	(0.515,0.57]	chr1	15352	11	INTRON	INTRON	DNAJC6	ENSG00000116675.16	ENST00000463018.5:ENST00000494710.6:ENST00000263441.11:ENST00000395325.7:ENST00000483402.1:ENST00000371069.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	29	2	1.86007	3.137525	4.41498	0.0526611	0.0106866	0.178401	0.0861859
chr19	47629890	47629990	7085970	0	+	0.52	(0.515,0.57]	chr19	709045	219	INTRON	INTRON	ENSG00000268746	ENSG00000268746.1	ENST00000599924.1	lncRNA	lncRNA	lncRNA	lncRNA	2	29	2	1.86007	3.137525	4.41498	0.0526611	0.0106866	0.178401	0.0861859
chr2	201202074	201202170	982363	0	+	0.541667	(0.515,0.57]	chr2	105489	15	INTRON	INTRON	CASP10	ENSG00000003400.16	ENST00000492363.6:ENST00000460140.5:ENST00000313728.12:ENST00000272879.9:ENST00000346817.10:ENST00000696199.1:ENST00000286186.11:ENST00000438843.6:ENST00000448480.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	29	2	1.86007	3.137525	4.41498	0.0526611	0.0106866	0.178401	0.0861859
chr10	48039642	48039741	4609523	0	-	0.414141	(0.408,0.44]	chr10	424706	2	INTRON	INTRON	ENSG00000289444	ENSG00000289444.1	ENST00000687180.1	lncRNA	lncRNA	lncRNA	lncRNA	1	27	2	2.43988	3.13741	3.83494	0.0411442	0.0398236	0.161534	0.143072
chr15	27397785	27397885	5986430	0	+	0.44	(0.408,0.44]	chr15	569192	475	INTRON	INTRON	GABRG3	ENSG00000182256.13	ENST00000615808.5:ENST00000555083.5:ENST00000554696.5:ENST00000333743.10	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	2.43988	3.13741	3.83494	0.0411442	0.0398236	0.161534	0.143072
chr19	3410195	3410295	7000063	0	+	0.42	(0.408,0.44]	chr19	694173	276	INTRON	INTRON	NFIC	ENSG00000141905.19	ENST00000641145.1:ENST00000589123.5:ENST00000395111.7:ENST00000586919.5:ENST00000341919.7:ENST00000443272.3:ENST00000590282.5	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	2.43988	3.13741	3.83494	0.0411442	0.0398236	0.161534	0.143072
chr21	9330830	9330930	7367439	0	+	0.42	(0.408,0.44]	chr21	751921	2	SS3_PROX	SS3_PROX:INTRON	ENSG00000278932	ENSG00000278932.5	ENST00000622961.3:ENST00000686553.1:ENST00000691955.1:ENST00000625153.3:ENST00000692626.1:ENST00000685951.1:ENST00000686510.1:ENST00000692884.1	lncRNA	lncRNA	lncRNA	lncRNA	1	27	2	2.43988	3.13741	3.83494	0.0411442	0.0398236	0.161534	0.143072
chr1	37544363	37544462	424167	0	-	0.50505	(0.476,0.515]	chr1	51278	29	INTRON	INTRON	SNIP1	ENSG00000163877.11	ENST00000296215.8:ENST00000468040.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	72	2	2.31726	3.1373800000000003	3.9575	0.015077	9.49972e-5	0.0994339	0.00818267
chr11	112035786	112035884	4865062	0	+	0.44898	(0.44,0.476]	chr11	453920	18	INTRON	INTRON	DLAT	ENSG00000150768.17	ENST00000280346.11:ENST00000679878.1:ENST00000679815.1:ENST00000679614.1:ENST00000533297.1:ENST00000681339.1:ENST00000681328.1:ENST00000681316.1:ENST00000680010.1:ENST00000527231.2:ENST00000679466.1:ENST00000679829.1:ENST00000681638.1:ENST00000679368.1:ENST00000531306.2:ENST00000393051.5:ENST00000680331.1:ENST00000680411.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	26	2	2.29842	3.13734	3.97626	0.0552483	0.0300538	0.165463	0.142135
chr12	98712679	98712761	5199824	0	+	0.47561	(0.44,0.476]	chr12	492000	4	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	APAF1	ENSG00000120868.14	ENST00000551964.6:ENST00000359972.6:ENST00000333991.5:ENST00000357310.5:ENST00000552268.5:ENST00000550527.5:ENST00000547045.5:ENST00000549007.1:ENST00000546491.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	26	2	2.29842	3.13734	3.97626	0.0552483	0.0300538	0.165463	0.142135
chr16	31449773	31449873	6475241	0	-	0.47	(0.44,0.476]	chr16	626082	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	ENSG00000261474	ENSG00000261474.1	ENST00000569291.1	lncRNA	lncRNA	lncRNA	lncRNA	1	26	2	2.29842	3.13734	3.97626	0.0552483	0.0300538	0.165463	0.142135
chr6	17652822	17652921	3065661	0	-	0.444444	(0.44,0.476]	chr6	284824	5	INTRON	INTRON	NUP153	ENSG00000124789.12	ENST00000613258.4:ENST00000537253.5:ENST00000262077.3	protein_coding	protein_coding	protein_coding	protein_coding	1	26	2	2.29842	3.13734	3.97626	0.0552483	0.0300538	0.165463	0.142135
chr6	161029186	161029285	3024866	0	+	0.464646	(0.44,0.476]	chr6	282308	66	INTRON	INTRON	MAP3K4	ENSG00000085511.20	ENST00000366919.6:ENST00000392142.9:ENST00000542952.5:ENST00000366920.6:ENST00000348824.11:ENST00000544041.5:ENST00000490904.6:ENST00000448119.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	26	2	2.29842	3.13734	3.97626	0.0552483	0.0300538	0.165463	0.142135
chr1	15692597	15692697	34095	0	+	0.49	(0.476,0.515]	chr1	4144	76	INTRON	INTRON	PLEKHM2	ENSG00000116786.13	ENST00000375799.8:ENST00000375793.2:ENST00000462455.1:ENST00000642363.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	53	2	2.82673	3.137285	3.44784	0.0134403	0.00113238	0.0946278	0.0308465
chrX	120613063	120613163	7714012	0	+	0.49	(0.476,0.515]	chrX	789359	9	UTR3	UTR3:EXON_MRNA	MCTS1	ENSG00000232119.8	ENST00000371317.10	protein_coding	protein_coding	protein_coding	protein_coding	2	53	2	2.82673	3.137285	3.44784	0.0134403	0.00113238	0.0946278	0.0308465
chr5	95551343	95551440	2680975	0	-	0.391753	(0.378,0.408]	chr5	253454	3	INTRON	INTRON	TTC37	ENSG00000198677.12	ENST00000649566.1:ENST00000358746.7:ENST00000514952.5:ENST00000513823.5	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	2.30961	3.13716	3.96471	0.055088	0.032421	0.165463	0.145026
chr1	235403185	235403285	340032	0	+	0.47	(0.44,0.476]	chr1	39557	12	INTRON	INTRON	TBCE	ENSG00000285053.1:ENSG00000284770.2	ENST00000644055.1:ENST00000645655.1:ENST00000647428.1:ENST00000643418.1:ENST00000646624.1:ENST00000647186.1:ENST00000646528.1:ENST00000645351.1:ENST00000643410.1:ENST00000645205.1:ENST00000645836.1:ENST00000642503.1:ENST00000646281.1:ENST00000645069.1:ENST00000644680.1:ENST00000645578.1:ENST00000642431.1:ENST00000644604.1:ENST00000651186.1:ENST00000643125.1:ENST00000406207.5:ENST00000642463.1:ENST00000645899.1:ENST00000647233.1:ENST00000642926.1:ENST00000644578.1:ENST00000647418.1:ENST00000645372.1:ENST00000645582.1:ENST00000643994.1:ENST00000647407.1:ENST00000642610.2:ENST00000644037.1:ENST00000646463.1:ENST00000366601.8:ENST00000643524.1:ENST00000646536.1:ENST00000643142.1:ENST00000644838.1:ENST00000646286.1:ENST00000646186.1:ENST00000643615.1:ENST00000543662.4:ENST00000646848.1:ENST00000647332.1:ENST00000647489.1:ENST00000644625.1:ENST00000646384.1:ENST00000645551.1:ENST00000646821.1:ENST00000472011.6:ENST00000643238.1:ENST00000646104.1:ENST00000645662.1:ENST00000643993.1:ENST00000645964.1:ENST00000642339.1:ENST00000644217.1:ENST00000642372.1:ENST00000646929.1:ENST00000644265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	35	2	1.83899	3.13712	4.43525	0.0589734	0.00897296	0.167915	0.0849778
chr16	53069171	53069271	6350860	0	+	0.46	(0.44,0.476]	chr16	609666	137	INTRON	INTRON	CHD9	ENSG00000177200.18	ENST00000447540.6:ENST00000566029.5:ENST00000615216.4:ENST00000561869.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	35	2	1.83899	3.13712	4.43525	0.0589734	0.00897296	0.167915	0.0849778
chr2	32035202	32035301	1091372	0	-	0.444444	(0.44,0.476]	chr2	116949	51	INTRON	INTRON	DPY30	ENSG00000162961.14	ENST00000452582.5:ENST00000414013.5:ENST00000430665.5:ENST00000422413.1:ENST00000342166.10:ENST00000295066.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	35	2	1.83899	3.13712	4.43525	0.0589734	0.00897296	0.167915	0.0849778
chr7	139623433	139623532	3657284	0	-	0.454545	(0.44,0.476]	chr7	339515	25	INTRON	INTRON	HIPK2	ENSG00000064393.16	ENST00000406875.8:ENST00000428878.6:ENST00000342645.7	protein_coding	protein_coding	protein_coding	protein_coding	2	35	2	1.83899	3.13712	4.43525	0.0589734	0.00897296	0.167915	0.0849778
chr1	207350338	207350437	303564	0	+	0.444444	(0.44,0.476]	chr1	34932	24	INTRON	INTRON	CD55	ENSG00000196352.18	ENST00000695822.1:ENST00000695823.1:ENST00000695826.1:ENST00000695825.1:ENST00000695827.1:ENST00000645323.1:ENST00000391921.9:ENST00000367064.9:ENST00000314754.12:ENST00000644836.1:ENST00000476590.1:ENST00000465534.5:ENST00000618707.2:ENST00000635614.2:ENST00000695831.1:ENST00000634386.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	33	2	2.14573	3.13708	4.12843	0.0337192	0.0238593	0.134145	0.129075
chr14	55654963	55655059	5727795	0	+	0.46875	(0.44,0.476]	chr14	543681	10	INTRON	INTRON	KTN1	ENSG00000126777.18	ENST00000395314.8:ENST00000438792.6:ENST00000459737.5:ENST00000395308.5:ENST00000395311.5:ENST00000413890.6:ENST00000395309.7:ENST00000553360.5:ENST00000554507.5:ENST00000555164.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	33	2	2.14573	3.13708	4.12843	0.0337192	0.0238593	0.134145	0.129075
chr16	58021127	58021225	6362689	0	+	0.44898	(0.44,0.476]	chr16	611004	10	UTR3	UTR3:EXON_MRNA	USB1	ENSG00000103005.12	ENST00000219281.8:ENST00000566082.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	33	2	2.14573	3.13708	4.12843	0.0337192	0.0238593	0.134145	0.129075
chr6	75628819	75628918	2905216	0	+	0.474747	(0.44,0.476]	chr6	274500	45	INTRON	INTRON	SENP6	ENSG00000112701.18	ENST00000370010.6:ENST00000447266.7:ENST00000327284.12:ENST00000493959.6:ENST00000483859.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	33	2	2.14573	3.13708	4.12843	0.0337192	0.0238593	0.134145	0.129075
chrX	18339493	18339593	7770907	0	-	0.45	(0.44,0.476]	chrX	794213	50	INTRON	INTRON	SCML2	ENSG00000102098.19	ENST00000251900.9	protein_coding	protein_coding	protein_coding	protein_coding	2	33	2	2.14573	3.13708	4.12843	0.0337192	0.0238593	0.134145	0.129075
chr1	21766273	21766373	396701	0	-	0.51	(0.476,0.515]	chr1	47345	81	INTRON	INTRON	USP48	ENSG00000090686.16	ENST00000400301.5:ENST00000308271.14:ENST00000529637.5:ENST00000421625.6:ENST00000527823.5:ENST00000532737.1:ENST00000489108.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	101	2	2.85682	3.13705	3.41728	0.00165726	1.52104e-4	0.0369207	0.0106137
chr6	133982650	133982716	2962055	0	+	0.30303	(0.28,0.32]	chr6	278527	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TBPL1	ENSG00000028839.10	ENST00000613034.4:ENST00000416965.5:ENST00000367871.5:ENST00000237264.9:ENST00000367869.1	protein_coding	protein_coding	protein_coding	protein_coding	2	40	2	2.24061	3.13703	4.03345	0.0704058	0.0194267	0.184298	0.119831
chr16	643644	643742	6273187	0	+	0.489796	(0.476,0.515]	chr16	598786	1	INTRON	INTRON	MCRIP2	ENSG00000172366.20	ENST00000611328.4:ENST00000307650.9:ENST00000491999.5:ENST00000629534.2:ENST00000474840.5:ENST00000615744.4:ENST00000620462.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	53	2	3.07422	3.136985	3.19975	0.00506023	0.00383299	0.0646039	0.0542786
chr19	32634842	32634941	7169203	0	-	0.494949	(0.476,0.515]	chr19	724418	30	INTRON	INTRON	ANKRD27	ENSG00000105186.16	ENST00000306065.9:ENST00000591100.6	protein_coding	protein_coding	protein_coding	protein_coding	2	53	2	3.07422	3.136985	3.19975	0.00506023	0.00383299	0.0646039	0.0542786
chr11	10279024	10279124	4914588	0	-	0.43	(0.408,0.44]	chr11	460478	847	INTRON	INTRON	SBF2	ENSG00000133812.18	ENST00000692716.1:ENST00000689940.1:ENST00000256190.13:ENST00000689128.1:ENST00000675281.2:ENST00000676387.2:ENST00000676324.2:ENST00000689258.1:ENST00000533770.6:ENST00000688417.1:ENST00000687210.1:ENST00000526353.2:ENST00000693022.1:ENST00000693201.1:ENST00000686079.1:ENST00000688206.1:ENST00000687256.1:ENST00000685217.1:ENST00000693212.1:ENST00000687300.1:ENST00000688739.1:ENST00000690806.1:ENST00000686677.1:ENST00000692068.1:ENST00000690959.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	39	2	1.75791	3.136975	4.51604	0.0378795	0.0137419	0.157034	0.0949306
chr22	49612048	49612148	7602201	0	-	0.32	(0.28,0.32]	chr22	778570	164	INTRON	INTRON	MIR3667HG	ENSG00000188511.13	ENST00000414287.5:ENST00000416411.1:ENST00000689875.1	lncRNA	lncRNA	lncRNA	lncRNA	6	166	2	2.97279	3.13697	3.30115	4.91009e-4	1.24146e-4	0.0205691	0.00952291
chr1	167300777	167300876	245653	0	+	0.545455	(0.515,0.57]	chr1	29273	259	INTRON	INTRON	POU2F1	ENSG00000143190.23	ENST00000559038.5:ENST00000367866.7:ENST00000557909.5:ENST00000271411.8:ENST00000429375.6:ENST00000560232.6:ENST00000442313.5:ENST00000367865.5:ENST00000492850.5:ENST00000541643.7:ENST00000648671.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	46	2	3.12663	3.136965	3.1473	0.00397184	0.00374498	0.0562234	0.0549214
chr7	92493613	92493710	3570243	0	-	0.319588	(0.28,0.32]	chr7	332608	6	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	PEX1	ENSG00000127980.16	ENST00000438045.5:ENST00000248633.9:ENST00000496420.5:ENST00000484913.5:ENST00000428214.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	45	2	1.61031	3.13695	4.66359	0.0600513	0.0193496	0.190658	0.108861
chr11	134242029	134242127	4886744	0	+	0.367347	(0.35,0.378]	chr11	457060	15	INTRON	INTRON	VPS26B	ENSG00000151502.11	ENST00000281187.10:ENST00000525095.2:ENST00000527586.1:ENST00000530402.1:ENST00000525918.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	34	2	1.9755	3.1369450000000003	4.29839	0.0398617	0.0294717	0.161534	0.128055
chr12	76846595	76846679	5174700	0	+	0.357143	(0.35,0.378]	chr12	490171	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ZDHHC17	ENSG00000186908.15	ENST00000426126.7:ENST00000550789.5:ENST00000552693.5:ENST00000553091.5:ENST00000550244.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	34	2	1.9755	3.1369450000000003	4.29839	0.0398617	0.0294717	0.161534	0.128055
chr2	167936412	167936512	1259169	0	-	0.54	(0.515,0.57]	chr2	133349	3	SS3_PROX	SS3_PROX:INTRON	B3GALT1-AS1	ENSG00000235335.3	ENST00000430546.2:ENST00000657553.1:ENST00000670221.1:ENST00000436982.2:ENST00000654994.1	lncRNA	lncRNA	lncRNA	lncRNA	6	111	2	2.77687	3.13685	3.49683	1.97084e-4	6.73116e-5	0.0122531	0.00723304
chr1	84670457	84670551	496572	0	-	0.382979	(0.378,0.408]	chr1	58878	7	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	SSX2IP	ENSG00000117155.17	ENST00000342203.8:ENST00000437941.6:ENST00000481102.5:ENST00000476905.6:ENST00000605755.5:ENST00000603677.1:ENST00000460500.1:ENST00000422026.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	55	2	3.10274	3.136815	3.17089	0.00586642	0.00357279	0.0668095	0.0548435
chr1	212303190	212303290	308253	0	+	0.38	(0.378,0.408]	chr1	35560	7	INTRON	INTRON	PPP2R5A	ENSG00000066027.12	ENST00000261461.7:ENST00000537030.3:ENST00000498129.6:ENST00000479259.1:ENST00000498123.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	55	2	3.10274	3.136815	3.17089	0.00586642	0.00357279	0.0668095	0.0548435
chr7	158635108	158635208	3688061	0	-	0.31	(0.28,0.32]	chr7	342108	30	INTRON	INTRON	NCAPG2	ENSG00000146918.20	ENST00000356309.8:ENST00000432615.5:ENST00000409423.5:ENST00000441982.5:ENST00000467785.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	46	2	1.76378	3.1367949999999998	4.50981	0.0395495	0.0275554	0.161534	0.123904
chr17	47215316	47215415	6621411	0	+	0.454545	(0.44,0.476]	chr17	645806	10	INTRON	INTRON	MYL4	ENSG00000198336.9	ENST00000571981.5:ENST00000572316.5:ENST00000354968.5:ENST00000570772.5:ENST00000536623.6:ENST00000576874.5:ENST00000573747.6:ENST00000393450.5:ENST00000572303.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	53	2	3.12799	3.13679	3.14559	0.0050635	0.00384923	0.0621733	0.0562562
chr8	31157830	31157930	3729208	0	+	0.47	(0.44,0.476]	chr8	346703	3	SS5_PROX	SS5_PROX:INTRON	WRN	ENSG00000165392.11	ENST00000650667.1:ENST00000298139.7:ENST00000521620.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	53	2	3.12799	3.13679	3.14559	0.0050635	0.00384923	0.0621733	0.0562562
chr22	39316205	39316305	7589769	0	-	0.39	(0.378,0.408]	chr22	777089	1	SS5_PROX	SS5_PROX:INTRON	RPL3	ENSG00000100316.16	ENST00000216146.9:ENST00000401609.5:ENST00000465618.5:ENST00000402527.5:ENST00000453303.5:ENST00000484358.1:ENST00000427905.5:ENST00000420536.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	245	2	2.88159	3.1366750000000003	3.39176	1.17224e-4	1.89981e-5	0.00929802	0.00354138
chr10	86521164	86521264	4659360	0	-	0.5	(0.476,0.515]	chr10	429303	4	SS5_PROX	SS5_PROX:INTRON	WAPL	ENSG00000062650.20	ENST00000298767.10	protein_coding	protein_coding	protein_coding	protein_coding	4	86	2	2.89673	3.136525	3.37632	0.00195267	3.48163e-4	0.0400465	0.0166215
chr17	82467478	82467576	6692353	0	+	0.418367	(0.408,0.44]	chr17	654561	27	INTRON	INTRON	NARF	ENSG00000141562.19	ENST00000579198.5:ENST00000390006.8:ENST00000583181.5:ENST00000584192.5:ENST00000580296.5:ENST00000345415.11:ENST00000581202.5:ENST00000374611.9:ENST00000457415.7:ENST00000581795.5:ENST00000584411.5:ENST00000577812.5:ENST00000581743.5:ENST00000577432.5:ENST00000582907.5:ENST00000309794.16:ENST00000578082.5:ENST00000580748.1:ENST00000577410.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	22	476	2	2.83468	3.136525	3.43837	1.23511e-5	3.70055e-8	0.00279915	7.69999e-5
chr7	64527616	64527716	3536964	0	-	0.53	(0.515,0.57]	chr7	329904	7	INTRON	INTRON	ZNF680	ENSG00000173041.12	ENST00000309683.11:ENST00000476563.1:ENST00000470847.1:ENST00000447137.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	99	2	2.99316	3.1364400000000003	3.27972	9.21623e-4	2.94964e-5	0.0278396	0.00431591
chr1	96813405	96813504	168877	0	+	0.373737	(0.35,0.378]	chr1	18274	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	PTBP2	ENSG00000117569.19	ENST00000482253.5:ENST00000675735.1:ENST00000609116.5:ENST00000674951.1:ENST00000675080.1:ENST00000426398.3:ENST00000370197.5:ENST00000370198.5:ENST00000476419.5:ENST00000676292.1:ENST00000676096.1:ENST00000675365.1:ENST00000674579.1:ENST00000675401.1:ENST00000476783.5:ENST00000492905.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	25	2	2.30249	3.136405	3.97032	0.0578667	0.0519726	0.176696	0.167723
chr1	168247930	168248030	250384	0	+	0.37	(0.35,0.378]	chr1	29769	55	UTR3	UTR3:EXON_MRNA	SFT2D2	ENSG00000213064.10	ENST00000271375.7	protein_coding	protein_coding	protein_coding	protein_coding	1	25	2	2.30249	3.136405	3.97032	0.0578667	0.0519726	0.176696	0.167723
chr10	68068751	68068848	4637882	0	-	0.371134	(0.35,0.378]	chr10	426440	12	UTR3	UTR3:EXON_MRNA:INTRON	HERC4	ENSG00000148634.16	ENST00000373700.9:ENST00000412272.6:ENST00000395198.7:ENST00000473533.6:ENST00000427635.6:ENST00000513996.5:ENST00000395185.7:ENST00000505760.5:ENST00000492996.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	25	2	2.30249	3.136405	3.97032	0.0578667	0.0519726	0.176696	0.167723
chr14	103668411	103668511	5828043	0	+	0.36	(0.35,0.378]	chr14	553079	51	INTRON	INTRON	KLC1	ENSG00000126214.22	ENST00000348520.10:ENST00000380038.7:ENST00000334553.11:ENST00000389744.8:ENST00000555836.5:ENST00000347839.10:ENST00000553286.5:ENST00000557575.5:ENST00000452929.6:ENST00000554280.5:ENST00000557450.5:ENST00000554228.5:ENST00000634686.1:ENST00000246489.11:ENST00000445352.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	25	2	2.30249	3.136405	3.97032	0.0578667	0.0519726	0.176696	0.167723
chr16	85806357	85806455	6416711	0	+	0.367347	(0.35,0.378]	chr16	615598	6	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	COX4I1	ENSG00000131143.10	ENST00000568339.5:ENST00000568794.5:ENST00000562336.5:ENST00000253452.8:ENST00000561569.5:ENST00000566405.5:ENST00000564544.1:ENST00000564903.1:ENST00000564648.1:ENST00000569997.1:ENST00000562929.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	25	2	2.30249	3.136405	3.97032	0.0578667	0.0519726	0.176696	0.167723
chr17	47547291	47547390	6621748	0	+	0.373737	(0.35,0.378]	chr17	645847	9	INTRON	INTRON	NPEPPS	ENSG00000141279.17	ENST00000525007.5:ENST00000525037.5:ENST00000677710.1:ENST00000530173.6:ENST00000526247.6:ENST00000677226.1:ENST00000322157.9:ENST00000678461.1:ENST00000532729.6:ENST00000533573.5:ENST00000677120.1:ENST00000678909.1:ENST00000678496.1:ENST00000678262.1:ENST00000677370.1:ENST00000677664.1:ENST00000528751.6:ENST00000527298.5:ENST00000534691.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	25	2	2.30249	3.136405	3.97032	0.0578667	0.0519726	0.176696	0.167723
chr17	66521554	66521654	6664488	0	+	0.37	(0.35,0.378]	chr17	650332	249	INTRON	INTRON	PRKCA	ENSG00000154229.12	ENST00000413366.8:ENST00000578063.5:ENST00000284384.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	25	2	2.30249	3.136405	3.97032	0.0578667	0.0519726	0.176696	0.167723
chr19	52074353	52074452	7205647	0	-	0.353535	(0.35,0.378]	chr19	731284	64	INTRON	INTRON	ZNF432:ZNF841	ENSG00000256087.7:ENSG00000197608.12	ENST00000598446.1:ENST00000594440.6:ENST00000426391.6:ENST00000594295.5:ENST00000389534.8:ENST00000595599.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	25	2	2.30249	3.136405	3.97032	0.0578667	0.0519726	0.176696	0.167723
chr2	15393663	15393727	1071463	0	-	0.375	(0.35,0.378]	chr2	114323	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS5_PROX:INTRON	NBAS	ENSG00000151779.13	ENST00000281513.10:ENST00000442506.5:ENST00000441755.5:ENST00000429842.1	protein_coding	protein_coding	protein_coding	protein_coding	1	25	2	2.30249	3.136405	3.97032	0.0578667	0.0519726	0.176696	0.167723
chr2	144438997	144439097	1240986	0	-	0.37	(0.35,0.378]	chr2	131703	81	INTRON	INTRON	ZEB2	ENSG00000169554.23	ENST00000636471.1:ENST00000627532.3:ENST00000638128.1:ENST00000637304.1:ENST00000636179.1:ENST00000636820.1:ENST00000637045.1:ENST00000419938.5:ENST00000409487.7:ENST00000440875.6:ENST00000636732.2:ENST00000636026.2:ENST00000675069.1:ENST00000689298.1:ENST00000539609.7:ENST00000558170.6:ENST00000303660.8:ENST00000427902.5:ENST00000637267.2:ENST00000392861.6:ENST00000431672.4:ENST00000409211.5:ENST00000465308.5:ENST00000434448.5:ENST00000472146.5:ENST00000461784.3:ENST00000476394.5:ENST00000637591.2:ENST00000479735.1:ENST00000453352.5:ENST00000435831.5:ENST00000444559.5:ENST00000630572.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	25	2	2.30249	3.136405	3.97032	0.0578667	0.0519726	0.176696	0.167723
chr2	181918398	181918497	937227	0	+	0.363636	(0.35,0.378]	chr2	102725	15	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ITPRID2	ENSG00000138434.17	ENST00000431877.7:ENST00000320370.11:ENST00000409001.5:ENST00000440623.5:ENST00000454579.5:ENST00000416081.5:ENST00000491720.5:ENST00000409136.5:ENST00000491866.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	25	2	2.30249	3.136405	3.97032	0.0578667	0.0519726	0.176696	0.167723
chr2	241241660	241241759	1347788	0	-	0.373737	(0.35,0.378]	chr2	141528	11	INTRON	INTRON	HDLBP	ENSG00000115677.18	ENST00000391975.5:ENST00000427183.6:ENST00000310931.10:ENST00000391976.6:ENST00000373292.8:ENST00000487169.5:ENST00000479169.5:ENST00000427487.5:ENST00000459788.1:ENST00000471294.1:ENST00000452931.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	25	2	2.30249	3.136405	3.97032	0.0578667	0.0519726	0.176696	0.167723
chr3	15797205	15797303	1623817	0	-	0.367347	(0.35,0.378]	chr3	168026	8	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	ANKRD28	ENSG00000206560.12	ENST00000399451.6:ENST00000624145.3:ENST00000683139.1:ENST00000412318.5:ENST00000497037.5:ENST00000439830.5:ENST00000461696.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	25	2	2.30249	3.136405	3.97032	0.0578667	0.0519726	0.176696	0.167723
chr3	33050174	33050273	1650679	0	-	0.353535	(0.35,0.378]	chr3	169237	36	INTRON	INTRON	GLB1	ENSG00000170266.16	ENST00000399402.7:ENST00000307363.10:ENST00000307377.12:ENST00000482097.5:ENST00000485698.5:ENST00000498537.5:ENST00000415454.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	25	2	2.30249	3.136405	3.97032	0.0578667	0.0519726	0.176696	0.167723
chr4	1897544	1897642	1910836	0	+	0.367347	(0.35,0.378]	chr4	191727	33	INTRON	INTRON	NSD2	ENSG00000109685.19	ENST00000508803.6:ENST00000507820.5:ENST00000508355.5:ENST00000514045.5:ENST00000515806.1:ENST00000398261.6:ENST00000382891.9:ENST00000353275.9:ENST00000382892.6:ENST00000382895.7:ENST00000312087.10:ENST00000420906.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	25	2	2.30249	3.136405	3.97032	0.0578667	0.0519726	0.176696	0.167723
chr4	103127939	103128038	2214861	0	-	0.363636	(0.35,0.378]	chr4	216987	45	INTRON	INTRON	CENPE	ENSG00000138778.14	ENST00000380026.8:ENST00000265148.9	protein_coding	protein_coding	protein_coding	protein_coding	1	25	2	2.30249	3.136405	3.97032	0.0578667	0.0519726	0.176696	0.167723
chr4	153586208	153586293	2068465	0	+	0.364706	(0.35,0.378]	chr4	204628	1	CDS	CDS:EXON_MRNA	TMEM131L	ENSG00000121210.16	ENST00000409663.7:ENST00000409959.8:ENST00000240487.5:ENST00000509565.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	25	2	2.30249	3.136405	3.97032	0.0578667	0.0519726	0.176696	0.167723
chr6	42885675	42885774	2867720	0	+	0.353535	(0.35,0.378]	chr6	271395	2	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	RPL7L1	ENSG00000146223.16	ENST00000493763.7:ENST00000483998.6:ENST00000397415.7:ENST00000304734.9:ENST00000602561.1:ENST00000462348.1:ENST00000459829.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	25	2	2.30249	3.136405	3.97032	0.0578667	0.0519726	0.176696	0.167723
chr7	139692556	139692656	3657980	0	-	0.36	(0.35,0.378]	chr7	339537	605	INTRON	INTRON	HIPK2	ENSG00000064393.16	ENST00000406875.8:ENST00000428878.6:ENST00000342645.7	protein_coding	protein_coding	protein_coding	protein_coding	1	25	2	2.30249	3.136405	3.97032	0.0578667	0.0519726	0.176696	0.167723
chr9	34293751	34293850	4246713	0	-	0.363636	(0.35,0.378]	chr9	390622	30	INTRON	INTRON	KIF24	ENSG00000186638.17	ENST00000402558.7:ENST00000379174.7	protein_coding	protein_coding	protein_coding	protein_coding	1	25	2	2.30249	3.136405	3.97032	0.0578667	0.0519726	0.176696	0.167723
chr16	2261679	2261777	6431628	0	-	0.408163	(0.378,0.408]	chr16	618787	31	INTRON	INTRON	RNPS1	ENSG00000205937.12	ENST00000397086.6:ENST00000566458.5:ENST00000320225.10:ENST00000566397.5:ENST00000565678.5:ENST00000561718.5:ENST00000568631.5:ENST00000569598.6:ENST00000301730.12:ENST00000567147.5:ENST00000565870.5:ENST00000561518.5:ENST00000564311.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	89	2	2.87389	3.136305	3.39872	0.0019852	4.01435e-4	0.0404516	0.0179994
chr9	130866832	130866932	4215395	0	+	0.55	(0.515,0.57]	chr9	386448	34	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000318560.6	protein_coding	protein_coding	protein_coding	protein_coding	5	99	2	2.72642	3.13621	3.546	7.31116e-4	5.07421e-5	0.0246497	0.00617596
chr11	85969532	85969631	5013815	0	-	0.323232	(0.32,0.35]	chr11	472906	84	INTRON	INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000530692.5:ENST00000526548.3:ENST00000630913.2:ENST00000529760.5:ENST00000528398.5:ENST00000532603.5:ENST00000356360.9:ENST00000529016.5:ENST00000526961.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	61	2	2.9451	3.1362	3.3273	0.011051	0.00218894	0.0873897	0.0435144
chr16	21870086	21870186	6461944	0	-	0.33	(0.32,0.35]	chr16	623467	39	INTRON	INTRON	NPIPB4	ENSG00000185864.18	ENST00000543449.1:ENST00000538859.1	protein_coding	processed_transcript	protein_coding	processed_transcript	2	61	2	2.99125	3.1361600000000003	3.28107	0.00958447	0.00262488	0.0820838	0.0470772
chr2	229834682	229834780	1340781	0	-	0.459184	(0.44,0.476]	chr2	140425	32	INTRON	INTRON	TRIP12	ENSG00000153827.14	ENST00000675453.1:ENST00000675903.1:ENST00000283943.9:ENST00000675423.1:ENST00000389044.8:ENST00000389045.7:ENST00000479037.5:ENST00000409677.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	86	2	2.14666	3.1361399999999997	4.12562	0.0116436	3.66727e-5	0.0889659	0.00484751
chr20	48928506	48928605	7282643	0	+	0.585859	(0.57,1]	chr20	740596	61	INTRON	INTRON	ARFGEF2	ENSG00000124198.10	ENST00000371917.5:ENST00000681399.1:ENST00000679436.1:ENST00000681885.1:ENST00000681021.1:ENST00000680871.1:ENST00000681656.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	63	2	3.01672	3.135925	3.25513	5.94133e-4	2.35468e-5	0.0221865	0.00396325
chr19	11108985	11109082	7017020	0	+	0.216495	[0,0.28]	chr19	697452	11	INTRON	INTRON	LDLR	ENSG00000130164.14	ENST00000557933.5:ENST00000558518.6:ENST00000545707.5:ENST00000535915.5:ENST00000455727.6:ENST00000558013.5:ENST00000252444.9:ENST00000560467.1	protein_coding	protein_coding	protein_coding	protein_coding	3	102	2	2.51584	3.13585	3.75586	0.0115397	5.203e-4	0.0889104	0.0204523
chr7	158812358	158812457	3689642	0	-	0.434343	(0.408,0.44]	chr7	342421	129	INTRON	INTRON	ESYT2	ENSG00000117868.18	ENST00000251527.10:ENST00000275418.13:ENST00000652148.1:ENST00000483958.5:ENST00000497111.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	73	2	2.26792	3.135655	4.00339	0.0179973	7.25052e-5	0.106756	0.00709818
chr22	31094631	31094716	7501688	0	+	0.411765	(0.408,0.44]	chr22	765390	4	INTRON	INTRON	SMTN	ENSG00000183963.19	ENST00000333137.12:ENST00000347557.6:ENST00000358743.5:ENST00000489337.5:ENST00000619644.4:ENST00000612341.4:ENST00000460658.5:ENST00000455608.5:ENST00000404574.5:ENST00000493335.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	54	2	2.71911	3.13563	3.55215	0.0189489	7.01039e-4	0.108861	0.0241881
chr16	74604957	74605057	6525311	0	-	0.5	(0.476,0.515]	chr16	631842	418	INTRON	INTRON	GLG1	ENSG00000090863.12	ENST00000205061.9:ENST00000422840.7:ENST00000447066.6:ENST00000562090.5:ENST00000567951.5:ENST00000627032.2:ENST00000565260.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	75	2	2.32001	3.13562	3.95123	0.0136217	1.50038e-4	0.101682	0.011202
chr9	124377899	124377999	4346275	0	-	0.49	(0.476,0.515]	chr9	399153	206	INTRON	INTRON	PSMB7	ENSG00000136930.13	ENST00000259457.8:ENST00000498485.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	36	2	2.05154	3.13559	4.21964	0.0336015	0.0167715	0.134145	0.110511
chr1	19142646	19142739	386084	0	-	0.301075	(0.28,0.32]	chr1	45860	5	INTRON	INTRON	UBR4	ENSG00000127481.15	ENST00000375254.8:ENST00000425413.5:ENST00000417040.1	protein_coding	protein_coding	protein_coding	protein_coding	4	107	2	2.72123	3.1355899999999997	3.54995	0.00157396	0.00112621	0.0361918	0.0308424
chr1	15864987	15865086	34832	0	+	0.30303	(0.28,0.32]	chr1	4246	165	INTRON	INTRON	SPEN	ENSG00000065526.12	ENST00000673875.1:ENST00000375759.8	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	2.2609	3.13546	4.01002	0.0671429	0.0434868	0.183051	0.162255
chr18	1328079	1328179	6941460	0	-	0.29	(0.28,0.32]	chr18	686579	41	INTRON	INTRON	LINC00470	ENSG00000132204.14	ENST00000657423.1:ENST00000657618.1:ENST00000584090.5:ENST00000660947.1:ENST00000669242.1:ENST00000660475.1:ENST00000653775.1:ENST00000661931.1:ENST00000412816.7:ENST00000577867.5:ENST00000584492.5:ENST00000667416.1:ENST00000661852.1:ENST00000657919.1:ENST00000661646.1:ENST00000667776.1:ENST00000654559.1:ENST00000661233.1:ENST00000653213.1:ENST00000659094.1:ENST00000660964.1:ENST00000577403.6:ENST00000660358.1:ENST00000669153.1:ENST00000657121.1:ENST00000655957.1:ENST00000659289.1:ENST00000665133.1:ENST00000671558.1:ENST00000666542.1:ENST00000663512.1:ENST00000582862.6:ENST00000578835.5:ENST00000669312.1:ENST00000581430.5:ENST00000581212.1:ENST00000658090.1	lncRNA	lncRNA	lncRNA	lncRNA	1	31	2	2.2609	3.13546	4.01002	0.0671429	0.0434868	0.183051	0.162255
chr20	64016945	64017045	7301749	0	+	0.54	(0.515,0.57]	chr20	743233	1	SS5_PROX	SS5_PROX:INTRON	PRPF6	ENSG00000101161.8	ENST00000266079.5	protein_coding	protein_coding	protein_coding	protein_coding	3	62	2	2.38476	3.13546	3.88616	0.0110593	1.07993e-4	0.0873897	0.00878438
chr17	82478370	82478470	6692465	0	+	0.6	(0.57,1]	chr17	654574	4	SS3_PROX	SS3_PROX:INTRON	NARF	ENSG00000141562.19	ENST00000390006.8:ENST00000345415.11:ENST00000581202.5:ENST00000374611.9:ENST00000457415.7:ENST00000581795.5:ENST00000577812.5:ENST00000581743.5:ENST00000577432.5:ENST00000582907.5:ENST00000309794.16:ENST00000578082.5:ENST00000577410.2:ENST00000579083.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	63	2	2.11241	3.13544	4.15847	0.00190628	1.26324e-5	0.0403772	0.00281675
chr1	67424604	67424695	477573	0	-	0.351648	(0.35,0.378]	chr1	57483	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SERBP1	ENSG00000142864.15	ENST00000370994.8:ENST00000361219.11:ENST00000370995.6:ENST00000370990.5:ENST00000484880.1:ENST00000490406.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	86	2	3.05136	3.13537	3.21938	0.00578894	4.98221e-4	0.0684334	0.0206993
chr12	111578668	111578767	5413026	0	-	0.373737	(0.35,0.378]	chr12	516941	139	INTRON	INTRON	ATXN2	ENSG00000204842.18	ENST00000642389.2:ENST00000608853.5:ENST00000672613.1:ENST00000673436.1:ENST00000643669.2:ENST00000616825.4:ENST00000389153.10:ENST00000550104.5:ENST00000483311.6:ENST00000672335.1:ENST00000673557.1:ENST00000673283.1:ENST00000673449.1:ENST00000535949.5:ENST00000542287.6:ENST00000644883.1:ENST00000647305.1:ENST00000671792.1:ENST00000392645.6:ENST00000672105.1:ENST00000549455.1:ENST00000548492.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	124	2	3.12201	3.1353549999999997	3.1487	6.87038e-4	1.12452e-4	0.024008	0.00904963
chr16	89911750	89911831	6422844	0	+	0.345679	(0.32,0.35]	chr16	616829	1	INTRON	INTRON	TCF25	ENSG00000141002.20	ENST00000640279.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	3	84	2	2.81262	3.13517	3.45772	0.00311322	0.00128487	0.0498063	0.0333518
chr3	152378484	152378584	1536086	0	+	0.24	[0,0.28]	chr3	160003	429	INTRON	INTRON	MBNL1	ENSG00000152601.18	ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000495875.6:ENST00000324210.10:ENST00000493459.5:ENST00000459747.1:ENST00000460591.5:ENST00000545754.5:ENST00000357472.7:ENST00000324196.9:ENST00000498502.5:ENST00000463374.5:ENST00000485910.5:ENST00000465907.6:ENST00000492948.5:ENST00000485509.5:ENST00000464596.5	protein_coding	protein_coding	protein_coding	protein_coding	3	101	2	2.8773	3.135155	3.39301	0.00353745	0.00226728	0.0528929	0.0437013
chr1	246029858	246029958	675929	0	-	0.42	(0.408,0.44]	chr1	79713	414	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000391836.3:ENST00000464398.1:ENST00000453676.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	54	2	3.02513	3.135115	3.2451	0.0059965	0.00337792	0.0700606	0.0516884
chr19	16657860	16657959	7150768	0	-	0.464646	(0.44,0.476]	chr19	722466	21	INTRON	INTRON	SMIM7	ENSG00000214046.9	ENST00000465250.6:ENST00000481671.6:ENST00000594662.5:ENST00000597781.5:ENST00000598278.5:ENST00000593409.5:ENST00000487803.5:ENST00000627144.2:ENST00000487416.7:ENST00000593404.5:ENST00000597711.5:ENST00000599310.5:ENST00000397349.6:ENST00000602194.5:ENST00000600740.5:ENST00000461488.5:ENST00000463051.5:ENST00000358726.6:ENST00000594507.5:ENST00000461364.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	41	2	2.03266	3.135105	4.23755	0.0263357	0.0155853	0.122221	0.109411
chr10	68427455	68427555	4639310	0	-	0.43	(0.408,0.44]	chr10	426660	42	INTRON	INTRON	DNA2	ENSG00000138346.15	ENST00000358410.8:ENST00000551118.6:ENST00000399179.6:ENST00000399180.3:ENST00000440722.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	57	2	2.74518	3.134945	3.52471	0.0152229	0.00112428	0.108535	0.0306963
chr11	120476170	120476268	4877641	0	+	0.469388	(0.44,0.476]	chr11	455965	3	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	ARHGEF12	ENSG00000196914.9	ENST00000397843.7:ENST00000356641.7:ENST00000532993.5:ENST00000529970.5:ENST00000526067.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	32	2	1.93084	3.134915	4.33899	0.0443175	0.0206616	0.162302	0.110999
chr6	161026006	161026105	3024834	0	+	0.464646	(0.44,0.476]	chr6	282308	34	INTRON	INTRON	MAP3K4	ENSG00000085511.20	ENST00000366919.6:ENST00000392142.9:ENST00000542952.5:ENST00000366920.6:ENST00000348824.11:ENST00000544041.5:ENST00000490904.6:ENST00000448119.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	32	2	1.93084	3.134915	4.33899	0.0443175	0.0206616	0.162302	0.110999
chr9	5829148	5829246	4231198	0	-	0.469388	(0.44,0.476]	chr9	388971	36	INTRON	INTRON	ERMP1	ENSG00000099219.15	ENST00000688202.1:ENST00000689364.1:ENST00000690284.1:ENST00000689268.1:ENST00000487088.6:ENST00000689030.1:ENST00000688887.1:ENST00000693487.1:ENST00000462592.5:ENST00000689671.1:ENST00000686418.1:ENST00000692974.1:ENST00000691560.1:ENST00000684950.1:ENST00000685462.1:ENST00000339450.10:ENST00000690648.1:ENST00000689742.1:ENST00000688899.1:ENST00000691251.1:ENST00000689259.1:ENST00000690037.1:ENST00000693638.1:ENST00000489219.5:ENST00000475005.1:ENST00000692524.1:ENST00000691058.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	32	2	1.93084	3.134915	4.33899	0.0443175	0.0206616	0.162302	0.110999
chr1	1519240	1519315	1925	0	+	0.56	(0.515,0.57]	chr1	463	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ATAD3A	ENSG00000197785.14	ENST00000378756.8:ENST00000672388.1:ENST00000378755.9:ENST00000339113.9:ENST00000536055.6:ENST00000429957.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	31	2	1.8707	3.13485	4.399	0.0523213	0.00708863	0.160182	0.0754923
chr16	8102122	8102222	6441530	0	-	0.29	(0.28,0.32]	chr16	620351	945	INTRON	INTRON	ENSG00000260289	ENSG00000260289.2	ENST00000670665.1:ENST00000654046.1:ENST00000567103.2	lncRNA	lncRNA	lncRNA	lncRNA	2	66	2	2.91851	3.134795	3.35108	0.0130672	0.00221345	0.093385	0.0435144
chr1	37493668	37493768	423837	0	-	0.34	(0.32,0.35]	chr1	51214	38	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	MEAF6	ENSG00000163875.16	ENST00000296214.10:ENST00000373075.6:ENST00000373074.5:ENST00000475828.5:ENST00000487788.5:ENST00000373073.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	35	2	1.81328	3.134785	4.45629	0.0615716	0.0246089	0.193423	0.12011
chr10	124918871	124918971	4535278	0	+	0.35	(0.32,0.35]	chr10	418562	12	INTRON	INTRON	ENSG00000249456	ENSG00000249456.1	ENST00000508096.1	lncRNA	lncRNA	lncRNA	lncRNA	2	35	2	1.81328	3.134785	4.45629	0.0615716	0.0246089	0.193423	0.12011
chr14	102693996	102694096	5823548	0	+	0.34	(0.32,0.35]	chr14	552496	117	INTRON	INTRON	RCOR1	ENSG00000089902.10	ENST00000262241.7	protein_coding	protein_coding	protein_coding	protein_coding	2	35	2	1.81328	3.134785	4.45629	0.0615716	0.0246089	0.193423	0.12011
chr6	20466555	20466655	2828096	0	+	0.34	(0.32,0.35]	chr6	265583	265	INTRON	INTRON	E2F3	ENSG00000112242.16	ENST00000346618.8:ENST00000535432.2	protein_coding	protein_coding	protein_coding	protein_coding	2	35	2	1.81328	3.134785	4.45629	0.0615716	0.0246089	0.193423	0.12011
chr1	235311921	235312021	663700	0	-	0.33	(0.32,0.35]	chr1	78552	508	INTRON	INTRON	ARID4B	ENSG00000054267.22	ENST00000349213.7:ENST00000366603.6:ENST00000264183.9:ENST00000421364.5:ENST00000491632.5:ENST00000418304.1:ENST00000466653.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	61	2	2.89743	3.134765	3.3721	0.0127608	0.00182912	0.0926667	0.0396683
chr15	87660278	87660378	6256157	0	-	0.34	(0.32,0.35]	chr15	596826	1169	INTRON	INTRON	ENSG00000259560	ENSG00000259560.2	ENST00000665121.1:ENST00000560439.1	lncRNA	lncRNA	lncRNA	lncRNA	2	61	2	3.03597	3.13464	3.23331	0.00832487	0.00315414	0.0774402	0.0515261
chr7	100871821	100871896	3365790	0	+	0.453333	(0.44,0.476]	chr7	315008	1	SS5_PROX	SS5_PROX:INTRON	TRIP6	ENSG00000087077.14	ENST00000200457.9:ENST00000476870.5:ENST00000619988.4:ENST00000429658.1:ENST00000488670.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	87	2	2.59185	3.13462	3.67739	0.00200767	3.8961e-4	0.0408395	0.0177751
chr14	73441641	73441741	5919138	0	-	0.42	(0.408,0.44]	chr14	562258	312	INTRON	INTRON	NUMB	ENSG00000133961.21	ENST00000554546.5:ENST00000555238.6:ENST00000557597.5:ENST00000356296.8:ENST00000555394.5:ENST00000554394.5:ENST00000555307.5:ENST00000554315.5:ENST00000555987.5:ENST00000556112.5:ENST00000557774.5:ENST00000554818.5:ENST00000557031.5:ENST00000556600.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	33	2	2.14732	3.134595	4.12187	0.0354689	0.0237354	0.137535	0.129075
chr2	87804527	87804625	1172983	0	-	0.428571	(0.408,0.44]	chr2	125238	35	INTRON	INTRON	RGPD2	ENSG00000185304.16	ENST00000398146.5	protein_coding	protein_coding	protein_coding	protein_coding	2	33	2	2.14732	3.134595	4.12187	0.0354689	0.0237354	0.137535	0.129075
chr2	202889423	202889522	1315235	0	-	0.424242	(0.408,0.44]	chr2	137954	45	INTRON	INTRON	WDR12	ENSG00000138442.11	ENST00000688520.1:ENST00000261015.5:ENST00000477727.5:ENST00000475611.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	33	2	2.14732	3.134595	4.12187	0.0354689	0.0237354	0.137535	0.129075
chr9	5021762	5021862	4096188	0	+	0.44	(0.408,0.44]	chr9	373236	4	SS3_PROX	SS3_PROX:INTRON	JAK2	ENSG00000096968.14	ENST00000636127.1:ENST00000476574.5:ENST00000381652.4	protein_coding	protein_coding	protein_coding	protein_coding	2	33	2	2.14732	3.134595	4.12187	0.0354689	0.0237354	0.137535	0.129075
chrX	101138288	101138387	7694548	0	+	0.424242	(0.408,0.44]	chrX	787402	55	INTRON	INTRON	CENPI	ENSG00000102384.14	ENST00000684367.1:ENST00000423383.3:ENST00000682095.1:ENST00000372927.5:ENST00000372926.5	protein_coding	protein_coding	protein_coding	protein_coding	2	33	2	2.14732	3.134595	4.12187	0.0354689	0.0237354	0.137535	0.129075
chr11	73834751	73834850	4825643	0	+	0.494949	(0.476,0.515]	chr11	450328	86	INTRON	INTRON	MRPL48	ENSG00000175581.14	ENST00000508278.6:ENST00000310614.12:ENST00000540162.5:ENST00000544140.5:ENST00000544819.5:ENST00000497094.6:ENST00000411840.6:ENST00000398483.7:ENST00000535277.5:ENST00000542303.5:ENST00000537007.5:ENST00000543058.1:ENST00000543374.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	33	2	2.13304	3.13445	4.13586	0.031846	0.024866	0.132101	0.13151
chr17	39342679	39342779	6766062	0	-	0.51	(0.476,0.515]	chr17	665492	1	SS5_PROX	SS5_PROX:INTRON	FBXL20	ENSG00000108306.13	ENST00000264658.11:ENST00000583610.5:ENST00000394294.7:ENST00000577399.5	protein_coding	protein_coding	protein_coding	protein_coding	2	33	2	2.13304	3.13445	4.13586	0.031846	0.024866	0.132101	0.13151
chr3	138541543	138541643	1829106	0	-	0.33	(0.32,0.35]	chr3	183871	38	INTRON	INTRON	CEP70	ENSG00000114107.9	ENST00000264982.8:ENST00000489254.5:ENST00000484888.5:ENST00000474781.5:ENST00000481834.5:ENST00000468900.5:ENST00000462419.5:ENST00000478673.5:ENST00000464035.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	43	2	1.72898	3.13443	4.53988	0.0425433	0.0202178	0.161951	0.109913
chr4	152507996	152508096	2274809	0	-	0.46	(0.44,0.476]	chr4	221124	182	INTRON	INTRON	FBXW7	ENSG00000109670.16	ENST00000281708.10:ENST00000603548.6:ENST00000604872.6:ENST00000647166.1:ENST00000643834.1:ENST00000642901.1	protein_coding	protein_coding	protein_coding	protein_coding	2	54	2	2.9586	3.1343550000000002	3.31011	0.00758318	0.00259023	0.0773151	0.0452934
chr17	16197014	16197113	6735052	0	-	0.494949	(0.476,0.515]	chr17	660752	20	INTRON	INTRON	NCOR1	ENSG00000141027.22	ENST00000268712.8:ENST00000411510.5:ENST00000582357.5:ENST00000436828.5:ENST00000460276.5:ENST00000585296.1:ENST00000430577.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	52	2	1.65426	3.13414	4.61402	0.0231344	0.00947755	0.126939	0.0817766
chr7	44578388	44578487	3528418	0	-	0.454545	(0.44,0.476]	chr7	329077	6	UTR3	UTR3:EXON_MRNA	TMED4	ENSG00000158604.15	ENST00000289577.9:ENST00000457408.7	protein_coding	protein_coding	protein_coding	protein_coding	4	44	2	1.43625	3.134135	4.83202	0.063142	0.00525002	0.197183	0.0633615
chr3	47834011	47834111	1420289	0	+	0.38	(0.378,0.408]	chr3	149238	30	INTRON	INTRON	DHX30	ENSG00000132153.15	ENST00000395745.6:ENST00000445061.6:ENST00000441384.5:ENST00000348968.8:ENST00000446256.6:ENST00000619982.4:ENST00000457607.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	73	2	2.86955	3.1341349999999997	3.39872	0.0019852	0.00159247	0.0404516	0.0367961
chr17	46132032	46132132	6784256	0	-	0.49	(0.476,0.515]	chr17	669216	108	INTRON	INTRON	KANSL1	ENSG00000120071.15	ENST00000574590.6:ENST00000572904.6:ENST00000432791.7:ENST00000575318.6:ENST00000638275.1:ENST00000262419.10:ENST00000648792.1:ENST00000639531.1:ENST00000639150.1:ENST00000639853.1:ENST00000571698.2:ENST00000639375.1:ENST00000638269.1:ENST00000576248.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	70	2	2.81076	3.133935	3.45711	0.00203568	0.00140905	0.0417667	0.0340865
chr12	101399499	101399596	5398005	0	-	0.298969	(0.28,0.32]	chr12	514821	26	INTRON	INTRON	ARL1	ENSG00000120805.14	ENST00000261636.13:ENST00000539055.5:ENST00000536227.5:ENST00000551688.1:ENST00000550597.1:ENST00000551828.5:ENST00000551671.5:ENST00000551092.5:ENST00000549283.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	38	2	2.0243	3.13375	4.2432	0.0479043	0.0364967	0.153759	0.153019
chr3	39064190	39064290	1401261	0	+	0.29	(0.28,0.32]	chr3	147036	6	INTRON	INTRON	WDR48	ENSG00000114742.14	ENST00000423296.6:ENST00000302313.10:ENST00000413099.6:ENST00000433841.6:ENST00000420940.6:ENST00000441361.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	38	2	2.0243	3.13375	4.2432	0.0479043	0.0364967	0.153759	0.153019
chr7	138515559	138515659	3435196	0	+	0.3	(0.28,0.32]	chr7	319972	2	SS5_PROX	SS5_PROX:INTRON	TRIM24	ENSG00000122779.18	ENST00000343526.9:ENST00000415680.6:ENST00000497516.5:ENST00000464210.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	38	2	2.0243	3.13375	4.2432	0.0479043	0.0364967	0.153759	0.153019
chr17	1351059	1351158	6699108	0	-	0.535354	(0.515,0.57]	chr17	655520	27	INTRON	INTRON	YWHAE	ENSG00000108953.17	ENST00000264335.13:ENST00000466227.6:ENST00000571732.5:ENST00000573026.1:ENST00000496706.1:ENST00000573196.5:ENST00000575977.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	47	2	2.9114	3.1337450000000002	3.35609	0.00826019	0.00174131	0.0813266	0.0375363
chr16	88914285	88914385	6540668	0	-	0.58	(0.57,1]	chr16	634096	119	INTRON	INTRON	CBFA2T3	ENSG00000129993.15	ENST00000268679.9:ENST00000327483.9:ENST00000569464.5:ENST00000569443.5:ENST00000563640.1:ENST00000564416.1:ENST00000570046.1	protein_coding	protein_coding	protein_coding	protein_coding	2	30	2	2.78409	3.13373	3.48337	0.0116033	6.20854e-4	0.0889104	0.0223951
chr14	102619216	102619315	5822799	0	+	0.454545	(0.44,0.476]	chr14	552490	255	INTRON	INTRON	RCOR1	ENSG00000089902.10	ENST00000262241.7	protein_coding	protein_coding	protein_coding	protein_coding	4	85	2	2.42643	3.133675	3.84092	0.0033369	2.66933e-4	0.0528877	0.0149989
chr9	77718265	77718363	4268808	0	-	0.357143	(0.35,0.378]	chr9	392845	23	UTR3	UTR3:EXON_MRNA	GNAQ	ENSG00000156052.11	ENST00000286548.9	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	2.32443	3.13367	3.94291	0.0544216	0.0374229	0.164972	0.155878
chr6	27131669	27131767	3072355	0	-	0.571429	(0.57,1]	chr6	285574	49	INTRON	INTRON	H2BC11	ENSG00000124635.9	ENST00000607124.1:ENST00000606923.1	protein_coding	protein_coding	protein_coding	protein_coding	42	441	2	2.88154	3.133595	3.38565	1.64064e-8	5.19171e-10	4.55172e-5	3.14175e-6
chr17	59935478	59935557	6644209	0	+	0.493671	(0.476,0.515]	chr17	648867	2	SS5_PROX	SS5_PROX:INTRON	RPS6KB1	ENSG00000108443.14	ENST00000393021.7:ENST00000472940.5:ENST00000225577.9:ENST00000443572.6:ENST00000406116.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	46	2	1.73688	3.1335550000000003	4.53023	0.0252731	0.0119748	0.133676	0.0899583
chr6	159789215	159789302	3254703	0	-	0.735632	(0.57,1]	chr6	302553	5	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	TCP1	ENSG00000120438.12	ENST00000321394.12:ENST00000544255.5:ENST00000420894.6:ENST00000392168.6:ENST00000539756.1:ENST00000543532.5:ENST00000538530.5:ENST00000538128.5:ENST00000543517.5:ENST00000537390.5:ENST00000536607.1:ENST00000546023.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	84	2	2.64588	3.133495	3.62111	3.49647e-4	1.50694e-6	0.0166791	8.03394e-4
chr15	56936888	56936988	6032294	0	+	0.37	(0.35,0.378]	chr15	574663	154	INTRON	INTRON	TCF12	ENSG00000140262.18	ENST00000438423.6:ENST00000267811.9:ENST00000333725.10:ENST00000560190.5:ENST00000559609.5:ENST00000558908.5:ENST00000557843.5:ENST00000557947.5:ENST00000561152.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	58	2	2.72497	3.133415	3.54186	0.0198266	8.14353e-4	0.109608	0.02604
chr9	123259343	123259443	4340389	0	-	0.45	(0.44,0.476]	chr9	398963	220	INTRON	INTRON	STRBP	ENSG00000165209.19	ENST00000348403.10:ENST00000360998.3:ENST00000407982.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	72	2	2.54944	3.133395	3.71735	0.00591346	4.72844e-4	0.0694038	0.0201458
chr10	42346547	42346647	4603239	0	-	0.41	(0.408,0.44]	chr10	424077	56	INTRON	INTRON	ENSG00000215146	ENSG00000215146.5	ENST00000609841.1:ENST00000650175.1:ENST00000423987.2:ENST00000609034.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	5	98	2	2.22819	3.1333849999999996	4.03858	0.00373083	1.05823e-4	0.0561984	0.00920724
chr1	235225568	235225666	662826	0	-	0.346939	(0.32,0.35]	chr1	78499	4	INTRON	INTRON	ARID4B	ENSG00000054267.22	ENST00000349213.7:ENST00000366603.6:ENST00000264183.9:ENST00000421364.5:ENST00000491632.5:ENST00000471257.5:ENST00000418304.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	62	2	2.68921	3.13326	3.57731	0.0230336	7.67492e-4	0.118056	0.0254532
chr18	56623390	56623489	6979748	0	-	0.333333	(0.32,0.35]	chr18	690540	49	INTRON	INTRON	TXNL1	ENSG00000091164.13	ENST00000217515.11:ENST00000590954.5:ENST00000587807.5:ENST00000586262.5:ENST00000587613.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	62	2	2.68921	3.13326	3.57731	0.0230336	7.67492e-4	0.118056	0.0254532
chr1	202804789	202804889	620714	0	-	0.45	(0.44,0.476]	chr1	73670	273	INTRON	INTRON	KDM5B	ENSG00000117139.18	ENST00000367265.9:ENST00000648338.1:ENST00000649542.1:ENST00000647757.1:ENST00000367264.7:ENST00000648473.1:ENST00000650569.1:ENST00000648056.1:ENST00000649770.1:ENST00000648469.1:ENST00000650417.1:ENST00000235790.9:ENST00000648738.1:ENST00000648958.1:ENST00000602511.1:ENST00000650368.1:ENST00000649200.1:ENST00000648354.1:ENST00000650493.1:ENST00000470573.5:ENST00000467487.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	136	2	2.99503	3.13321	3.27139	2.98386e-4	4.01351e-5	0.0160416	0.00513517
chr4	1247367	1247466	2094993	0	-	0.676768	(0.57,1]	chr4	207174	55	INTRON	INTRON	CTBP1	ENSG00000159692.16	ENST00000382952.8:ENST00000290921.10:ENST00000506180.5:ENST00000514210.5:ENST00000514495.1:ENST00000515399.5:ENST00000513420.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	30	2	2.91889	3.1332000000000004	3.34751	0.00719009	0.00122677	0.0756118	0.0320791
chr6	85512302	85512402	3150072	0	-	0.58	(0.57,1]	chr6	293675	41	EXON_MRNA	EXON_MRNA:INTRON	ENSG00000271793:SNX14	ENSG00000271793.2:ENSG00000135317.14	ENST00000682083.1:ENST00000683074.1:ENST00000681965.1:ENST00000682171.1:ENST00000684150.1:ENST00000683785.1:ENST00000682497.1:ENST00000684647.1:ENST00000683643.1:ENST00000682023.1:ENST00000682022.1:ENST00000683542.1:ENST00000683126.1:ENST00000683857.1:ENST00000683898.1:ENST00000682854.1:ENST00000682491.1:ENST00000682174.1:ENST00000684239.1:ENST00000682939.1:ENST00000684570.1:ENST00000682057.1:ENST00000682878.1:ENST00000683880.1:ENST00000684422.1:ENST00000682504.1:ENST00000683726.1:ENST00000684680.1:ENST00000683196.1:ENST00000683458.1:ENST00000683803.1:ENST00000684281.1:ENST00000682991.1:ENST00000683754.1:ENST00000683481.1:ENST00000682455.1:ENST00000682034.1:ENST00000684451.1:ENST00000683583.1:ENST00000682776.1:ENST00000683873.1:ENST00000683878.1:ENST00000683195.1:ENST00000682995.1:ENST00000682374.1:ENST00000683698.1:ENST00000682454.1:ENST00000682694.1:ENST00000682412.1:ENST00000514801.2:ENST00000682926.1:ENST00000682682.1:ENST00000418862.2:ENST00000346348.7:ENST00000314673.8:ENST00000682633.1:ENST00000683085.1:ENST00000682688.1:ENST00000684319.1:ENST00000683577.1:ENST00000682709.1:ENST00000684299.1:ENST00000682133.1:ENST00000682594.1:ENST00000683473.1:ENST00000682106.1:ENST00000683364.1:ENST00000683436.1:ENST00000684220.1:ENST00000683909.1:ENST00000684118.1:ENST00000681981.1:ENST00000682738.1:ENST00000509338.6:ENST00000684717.1:ENST00000682660.1:ENST00000683073.1:ENST00000515216.6:ENST00000684581.1:ENST00000683763.1:ENST00000683479.1:ENST00000682464.1:ENST00000684108.1:ENST00000682514.1:ENST00000684017.1:ENST00000684273.1:ENST00000513865.5:ENST00000505648.5:ENST00000508980.5:ENST00000369627.6:ENST00000503491.5:ENST00000508658.6:ENST00000683097.1:ENST00000683541.1:ENST00000683759.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	30	2	2.91889	3.1332000000000004	3.34751	0.00719009	0.00122677	0.0756118	0.0320791
chr5	160117404	160117504	2759780	0	-	0.51	(0.476,0.515]	chr5	260442	84	INTRON	INTRON	PWWP2A	ENSG00000170234.13	ENST00000456329.7:ENST00000523662.1:ENST00000307063.9:ENST00000520662.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	113	2	2.79856	3.1331100000000003	3.46766	7.60949e-4	7.4323e-5	0.0252625	0.00719723
chr10	73010468	73010568	4646969	0	-	0.31	(0.28,0.32]	chr10	427477	1	SS5_PROX	SS5_PROX:INTRON	P4HA1	ENSG00000122884.13	ENST00000394890.7:ENST00000307116.6:ENST00000373008.6:ENST00000440381.5:ENST00000263556.3:ENST00000464310.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	161	2	2.23717	3.1330999999999998	4.02903	0.00117311	2.19226e-4	0.0316446	0.0135522
chr7	101843159	101843259	3366620	0	+	0.29	(0.28,0.32]	chr7	315215	238	INTRON	INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000497815.5:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000607092.1:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000558469.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	66	2	3.04485	3.1327949999999998	3.22074	0.00894006	0.00362783	0.0799922	0.055479
chr7	50701522	50701622	3531748	0	-	0.42	(0.408,0.44]	chr7	329460	265	INTRON	INTRON	GRB10	ENSG00000106070.20	ENST00000335866.7:ENST00000398812.6:ENST00000398810.6:ENST00000401949.6:ENST00000402578.5:ENST00000644769.1:ENST00000403097.6:ENST00000644879.1:ENST00000406641.5:ENST00000402497.6:ENST00000357271.9:ENST00000643299.1:ENST00000407526.6:ENST00000645075.2:ENST00000439044.7:ENST00000644716.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	53	2	2.95296	3.132765	3.31257	0.00929354	0.00198621	0.0817766	0.0411469
chr8	66650857	66650957	3961246	0	-	0.42	(0.408,0.44]	chr8	363399	151	INTRON	INTRON	VCPIP1	ENSG00000175073.8	ENST00000310421.5	protein_coding	protein_coding	protein_coding	protein_coding	2	53	2	3.00595	3.132715	3.25948	0.00781452	0.00246454	0.0759016	0.0459102
chr22	47745892	47745991	7540513	0	+	0.444444	(0.44,0.476]	chr22	770742	69	INTRON	INTRON	ENSG00000224271	ENSG00000224271.7	ENST00000664761.1:ENST00000650683.1:ENST00000651536.1:ENST00000652656.1:ENST00000652072.1:ENST00000651445.1:ENST00000423737.5:ENST00000650660.1:ENST00000651056.1:ENST00000652611.1:ENST00000652399.1:ENST00000652123.1:ENST00000651311.1:ENST00000652505.1:ENST00000652702.2:ENST00000652030.2:ENST00000651403.1:ENST00000652228.1:ENST00000651124.1:ENST00000650972.1:ENST00000651985.1:ENST00000651637.1:ENST00000650924.1:ENST00000651003.1:ENST00000651948.2:ENST00000651293.1:ENST00000651939.1:ENST00000650787.1:ENST00000651517.1:ENST00000651662.1:ENST00000651638.1:ENST00000670853.1:ENST00000652080.1:ENST00000651294.1:ENST00000652164.1:ENST00000651538.1:ENST00000651033.1:ENST00000651584.1	lncRNA	lncRNA	lncRNA	lncRNA	9	169	2	2.56898	3.13265	3.69632	1.20232e-4	3.36357e-5	0.00938389	0.00488303
chr20	5546293	5546390	7311673	0	-	0.360825	(0.35,0.378]	chr20	744503	20	UTR3	UTR3:EXON_MRNA	GPCPD1	ENSG00000125772.14	ENST00000379019.7:ENST00000481038.5:ENST00000418646.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	47	2	1.54563	3.13258	4.71953	0.046845	0.0103314	0.167716	0.0850389
chr17	20881420	20881520	6576193	0	+	0.25	[0,0.28]	chr17	639372	124	INTRON	INTRON	CCDC144NL-AS1	ENSG00000233098.10	ENST00000577537.5:ENST00000692759.1:ENST00000443508.8:ENST00000692309.1:ENST00000439794.6:ENST00000417232.6:ENST00000583962.2:ENST00000582324.5:ENST00000577860.5	lncRNA	lncRNA	lncRNA	lncRNA	2	75	2	3.0836	3.1324899999999998	3.18138	0.00940284	0.00487606	0.0817766	0.0640618
chr1	1846979	1847079	362400	0	-	0.41	(0.408,0.44]	chr1	42311	69	INTRON	INTRON	GNB1	ENSG00000078369.18	ENST00000610897.4:ENST00000615252.4:ENST00000378609.9:ENST00000439272.6:ENST00000434686.6:ENST00000472614.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	32	2	1.93243	3.132405	4.33238	0.0441194	0.0218901	0.162255	0.11491
chr6	38792372	38792471	2861188	0	+	0.414141	(0.408,0.44]	chr6	270403	3	INTRON	INTRON	DNAH8	ENSG00000124721.18	ENST00000327475.11:ENST00000449981.6:ENST00000359357.7	protein_coding	protein_coding	protein_coding	protein_coding	2	32	2	1.93243	3.132405	4.33238	0.0441194	0.0218901	0.162255	0.11491
chr8	31104143	31104243	3728655	0	+	0.42	(0.408,0.44]	chr8	346622	28	INTRON	INTRON	WRN	ENSG00000165392.11	ENST00000650667.1:ENST00000298139.7:ENST00000521620.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	32	2	1.93243	3.132405	4.33238	0.0441194	0.0218901	0.162255	0.11491
chr9	95316795	95316894	4292040	0	-	0.414141	(0.408,0.44]	chr9	394795	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	FANCC	ENSG00000158169.14	ENST00000289081.8:ENST00000375305.6:ENST00000490972.7:ENST00000696261.1:ENST00000636777.1:ENST00000474949.1:ENST00000647778.1:ENST00000433829.1:ENST00000647882.1:ENST00000650176.1:ENST00000696262.1:ENST00000649611.1:ENST00000696263.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	32	2	1.93243	3.132405	4.33238	0.0441194	0.0218901	0.162255	0.11491
chr16	70416956	70417056	6511243	0	-	0.49	(0.476,0.515]	chr16	630689	155	INTRON	INTRON	ST3GAL2	ENSG00000157350.13	ENST00000342907.3:ENST00000566097.1:ENST00000561708.1:ENST00000567586.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	32	2	1.91817	3.132325	4.34648	0.0459211	0.0193566	0.164984	0.108861
chr2	113929917	113930015	854647	0	+	0.510204	(0.476,0.515]	chr2	95917	21	INTRON	INTRON	ACTR3	ENSG00000115091.12	ENST00000443297.5:ENST00000263238.7:ENST00000415792.5:ENST00000446821.5:ENST00000535589.3:ENST00000489779.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	32	2	1.91817	3.132325	4.34648	0.0459211	0.0193566	0.164984	0.108861
chr2	121604424	121604521	1221939	0	-	0.494845	(0.476,0.515]	chr2	130053	14	INTRON	INTRON	CLASP1	ENSG00000074054.20	ENST00000263710.8:ENST00000397587.7:ENST00000541377.5:ENST00000409078.8:ENST00000455322.6	protein_coding	protein_coding	protein_coding	protein_coding	2	32	2	1.91817	3.132325	4.34648	0.0459211	0.0193566	0.164984	0.108861
chr2	241293562	241293661	1348348	0	-	0.464646	(0.44,0.476]	chr2	141648	206	INTRON	INTRON	HDLBP	ENSG00000115677.18	ENST00000310931.10:ENST00000391976.6:ENST00000428482.5:ENST00000430918.5:ENST00000441124.5:ENST00000413241.5:ENST00000423693.5:ENST00000425989.5:ENST00000420451.5:ENST00000417540.5:ENST00000462130.1:ENST00000496569.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	71	2	3.08877	3.132245	3.17572	0.00427037	5.52878e-4	0.0573912	0.021371
chr16	70552857	70552956	6385445	0	+	0.414141	(0.408,0.44]	chr16	613937	18	INTRON	INTRON	SF3B3	ENSG00000189091.13	ENST00000302516.10:ENST00000567635.5:ENST00000567250.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	71	2	2.73941	3.13206	3.52471	0.002744	0.00112428	0.0484022	0.0306963
chr1	150835231	150835322	552564	0	-	0.318681	(0.28,0.32]	chr1	64980	2	INTRON	INTRON	ARNT	ENSG00000143437.21	ENST00000358595.10:ENST00000471844.6:ENST00000354396.6:ENST00000515192.5:ENST00000505755.5:ENST00000468970.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	37	2	1.83771	3.1320050000000004	4.4263	0.0591725	0.0330296	0.189982	0.133816
chr13	45339699	45339797	5585179	0	-	0.285714	(0.28,0.32]	chr13	533746	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TPT1	ENSG00000133112.17	ENST00000616577.4:ENST00000530705.6:ENST00000379056.5:ENST00000529421.5:ENST00000484604.5:ENST00000490277.1:ENST00000533567.5:ENST00000379060.8:ENST00000379055.5:ENST00000309246.9:ENST00000527226.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	37	2	1.83771	3.1320050000000004	4.4263	0.0591725	0.0330296	0.189982	0.133816
chr4	159143288	159143388	2073902	0	+	0.32	(0.28,0.32]	chr4	205172	387	INTRON	INTRON	RAPGEF2	ENSG00000109756.10	ENST00000644474.1:ENST00000691494.1:ENST00000505478.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	37	2	1.83771	3.1320050000000004	4.4263	0.0591725	0.0330296	0.189982	0.133816
chr7	50764902	50765001	3532395	0	-	0.282828	(0.28,0.32]	chr7	329523	25	INTRON	INTRON	GRB10	ENSG00000106070.20	ENST00000335866.7:ENST00000401949.6:ENST00000644769.1:ENST00000644879.1:ENST00000402497.6:ENST00000407526.6:ENST00000645075.2:ENST00000439044.7:ENST00000644716.1:ENST00000483819.1:ENST00000470992.5:ENST00000492265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	37	2	1.83771	3.1320050000000004	4.4263	0.0591725	0.0330296	0.189982	0.133816
chr9	5001795	5001895	4095988	0	+	0.31	(0.28,0.32]	chr9	373235	154	INTRON	INTRON	JAK2	ENSG00000096968.14	ENST00000636127.1:ENST00000476574.5:ENST00000381652.4	protein_coding	protein_coding	protein_coding	protein_coding	2	37	2	1.83771	3.1320050000000004	4.4263	0.0591725	0.0330296	0.189982	0.133816
chrX	123614589	123614689	7877829	0	-	0.32	(0.28,0.32]	chrX	802417	4	SS3_PROX	SS3_PROX:INTRON	THOC2	ENSG00000125676.20	ENST00000448128.5:ENST00000245838.13:ENST00000441692.5:ENST00000497887.5:ENST00000618150.4:ENST00000432353.5:ENST00000355725.8:ENST00000416618.5:ENST00000491737.5:ENST00000464992.6:ENST00000496830.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	37	2	1.83771	3.1320050000000004	4.4263	0.0591725	0.0330296	0.189982	0.133816
chr5	177329569	177329669	2777378	0	-	0.33	(0.32,0.35]	chr5	261667	114	INTRON	INTRON	LMAN2	ENSG00000169223.16	ENST00000694903.1	protein_coding	processed_transcript	protein_coding	processed_transcript	4	51	2	1.72405	3.131965	4.53988	0.0275418	0.0202178	0.137011	0.109913
chr17	38809401	38809501	6764905	0	-	0.33	(0.32,0.35]	chr17	665345	3	SS5_PROX	SS5_PROX:INTRON	CWC25	ENSG00000273559.5	ENST00000614790.5:ENST00000619299.4:ENST00000618122.4:ENST00000619462.4:ENST00000611845.1:ENST00000619818.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	61	2	2.84812	3.13183	3.41554	0.0147575	0.00153152	0.0983813	0.0361484
chr5	126998838	126998938	2714241	0	-	0.35	(0.32,0.35]	chr5	255278	521	INTRON	INTRON	MARCHF3	ENSG00000173926.6	ENST00000308660.6:ENST00000502289.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	61	2	2.84812	3.13183	3.41554	0.0147575	0.00153152	0.0983813	0.0361484
chr10	73405218	73405317	4649332	0	-	0.525253	(0.515,0.57]	chr10	427800	40	INTRON	INTRON	ANXA7	ENSG00000138279.16	ENST00000372921.10:ENST00000372919.8:ENST00000492380.1:ENST00000394847.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	74	2	2.15866	3.131785	4.10491	0.0100547	3.09275e-5	0.0848452	0.00443703
chr17	50721782	50721879	6626988	0	+	0.319588	(0.28,0.32]	chr17	647176	16	INTRON	INTRON	LUC7L3	ENSG00000108848.16	ENST00000625349.2:ENST00000508045.5:ENST00000508218.5:ENST00000509335.5:ENST00000506686.5:ENST00000393227.6:ENST00000504563.6:ENST00000505658.6:ENST00000240304.5:ENST00000508482.5:ENST00000505619.5:ENST00000510984.5:ENST00000507200.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	165	2	2.89007	3.131785	3.3735	3.56335e-4	1.94598e-4	0.0175154	0.0122121
chr16	29921961	29922053	6471983	0	-	0.347826	(0.32,0.35]	chr16	625368	1	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	KCTD13	ENSG00000174943.11	ENST00000308768.9:ENST00000568000.6:ENST00000566842.5:ENST00000568995.1:ENST00000563264.1:ENST00000566413.1:ENST00000561540.2:ENST00000648037.1:ENST00000567795.3:ENST00000649581.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	98	2	2.59582	3.131745	3.66767	0.00178944	8.30614e-4	0.0392749	0.0266389
chr20	383606	383702	7219024	0	+	0.479167	(0.476,0.515]	chr20	733506	6	INTRON	INTRON	TRIB3	ENSG00000101255.12	ENST00000615226.4:ENST00000217233.9:ENST00000449710.5:ENST00000422053.3	protein_coding	protein_coding	protein_coding	protein_coding	5	99	2	2.76757	3.13172	3.49587	0.00120011	2.52719e-4	0.0315806	0.0141489
chr13	32618772	32618872	5465631	0	+	0.4	(0.378,0.408]	chr13	523717	318	INTRON	INTRON	PDS5B	ENSG00000083642.19	ENST00000315596.15:ENST00000482955.5:ENST00000498550.5:ENST00000450460.5:ENST00000493653.1:ENST00000466078.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	55	2	2.78946	3.131615	3.47377	0.0158859	0.00103087	0.101453	0.0294094
chr13	95138596	95138696	5638226	0	-	0.39	(0.378,0.408]	chr13	537056	222	INTRON	INTRON	ABCC4	ENSG00000125257.16	ENST00000645237.2:ENST00000643051.1:ENST00000643842.1:ENST00000646439.1:ENST00000644880.1:ENST00000643816.1:ENST00000536256.3:ENST00000643556.1:ENST00000629385.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	100	2	2.46596	3.1315	3.79704	0.00125753	3.6912e-4	0.03295	0.0178272
chr1	229473761	229473859	652973	0	-	0.540816	(0.515,0.57]	chr1	77333	26	INTRON	INTRON	NUP133	ENSG00000069248.12	ENST00000261396.6	protein_coding	protein_coding	protein_coding	protein_coding	2	29	2	1.94945	3.1313549999999997	4.31326	0.0414068	0.0141817	0.161557	0.0959618
chr16	3669751	3669849	6433974	0	-	0.530612	(0.515,0.57]	chr16	619294	33	INTRON	INTRON	TRAP1	ENSG00000126602.11	ENST00000246957.10:ENST00000538171.5:ENST00000575671.5:ENST00000573872.5:ENST00000576335.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	29	2	1.94945	3.1313549999999997	4.31326	0.0414068	0.0141817	0.161557	0.0959618
chr2	61429818	61429918	1130144	0	-	0.52	(0.515,0.57]	chr2	121499	86	INTRON	INTRON	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000453133.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	29	2	1.94945	3.1313549999999997	4.31326	0.0414068	0.0141817	0.161557	0.0959618
chr1	1394239	1394333	359863	0	-	0.478723	(0.476,0.515]	chr1	41791	4	INTRON	INTRON	CCNL2	ENSG00000221978.13	ENST00000400809.8:ENST00000482621.5:ENST00000496007.5:ENST00000481223.6:ENST00000488340.5:ENST00000471930.5:ENST00000408918.8:ENST00000473872.5:ENST00000425598.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	131	2	2.28812	3.131155	3.97419	0.00344676	3.18568e-6	0.0517761	0.00115707
chr5	53613082	53613182	2353017	0	+	0.4	(0.378,0.408]	chr5	227009	78	INTRON	INTRON	NDUFS4	ENSG00000164258.12	ENST00000507026.5:ENST00000502423.5:ENST00000296684.10:ENST00000506974.5:ENST00000506765.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	73	2	2.98295	3.131085	3.27922	0.00312717	9.47389e-4	0.0499153	0.0282007
chrX	41337615	41337690	7645681	0	+	0.373333	(0.35,0.378]	chrX	782493	3	EXON_MRNA	EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DDX3X	ENSG00000215301.11	ENST00000625837.2:ENST00000626301.2:ENST00000629785.2:ENST00000630255.2:ENST00000630370.2:ENST00000630858.2:ENST00000629496.3:ENST00000610559.5:ENST00000611546.2:ENST00000478993.5:ENST00000457138.7:ENST00000643821.1:ENST00000644876.2:ENST00000399959.7:ENST00000644074.1:ENST00000645338.1:ENST00000646196.1:ENST00000642793.1:ENST00000646940.1:ENST00000644307.1:ENST00000645561.1:ENST00000645080.1:ENST00000642597.1:ENST00000642722.1:ENST00000644109.1:ENST00000644958.1:ENST00000646122.1:ENST00000644513.1:ENST00000645589.1:ENST00000441189.4:ENST00000646822.1:ENST00000631641.2:ENST00000615742.4:ENST00000647219.1:ENST00000480592.6:ENST00000646223.1:ENST00000643963.1:ENST00000646319.1:ENST00000645783.1:ENST00000642624.1:ENST00000542215.5:ENST00000644073.1:ENST00000644677.1:ENST00000615313.5:ENST00000642322.1:ENST00000622198.5:ENST00000645120.1:ENST00000646107.1:ENST00000646627.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	21	466	2	2.43527	3.13105	3.82683	1.2006e-4	1.78326e-8	0.00992311	4.86494e-5
chr7	97870229	97870313	3579375	0	-	0.333333	(0.32,0.35]	chr7	333300	4	SS3_PROX	SS3_PROX:INTRON	ASNS:ENSG00000284707	ENSG00000070669.17:ENSG00000284707.2	ENST00000394308.8:ENST00000641784.1:ENST00000641390.1:ENST00000175506.8:ENST00000394309.7:ENST00000437628.5:ENST00000641315.1:ENST00000422745.5:ENST00000455086.5:ENST00000444334.5:ENST00000442734.5:ENST00000437657.5:ENST00000453600.5:ENST00000451771.5:ENST00000414884.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	4	55	2	1.98909	3.131045	4.273	0.0368357	0.0108865	0.138959	0.0923273
chr3	9991685	9991783	1362017	0	+	0.418367	(0.408,0.44]	chr3	143392	26	INTRON	INTRON	EMC3-AS1	ENSG00000180385.9	ENST00000692142.1:ENST00000366264.6:ENST00000693066.1:ENST00000326237.3:ENST00000440568.1:ENST00000438698.1:ENST00000424904.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	8	174	2	2.86435	3.1309899999999997	3.39763	6.19926e-5	3.50918e-5	0.00654107	0.00499276
chr15	80137628	80137723	6071831	0	+	0.357895	(0.35,0.378]	chr15	578378	1	UTR3	UTR3:EXON_MRNA	ZFAND6	ENSG00000086666.19	ENST00000613266.4:ENST00000561060.5:ENST00000559157.5:ENST00000261749.11:ENST00000558494.5:ENST00000618205.4:ENST00000559835.5:ENST00000559775.5:ENST00000616533.4:ENST00000558087.5:ENST00000557983.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	103	2	3.02262	3.13096	3.2393	0.00119456	2.86552e-4	0.0315806	0.0150568
chrX	74268780	74268880	7841366	0	-	0.5	(0.476,0.515]	chrX	799728	64	INTRON	INTRON	FTX	ENSG00000230590.12	ENST00000603672.5:ENST00000430772.6:ENST00000602776.6:ENST00000638681.1:ENST00000652319.1:ENST00000661133.1:ENST00000652071.1:ENST00000602812.6:ENST00000651703.1:ENST00000653018.1:ENST00000658448.1:ENST00000662240.1:ENST00000652527.1:ENST00000651451.1:ENST00000657611.1:ENST00000660481.1:ENST00000659574.1:ENST00000661084.1:ENST00000662494.1:ENST00000670936.1:ENST00000602420.6:ENST00000658203.1:ENST00000638985.1:ENST00000691187.1:ENST00000603037.2:ENST00000687056.1:ENST00000654870.2:ENST00000652540.1:ENST00000652331.2:ENST00000652013.1:ENST00000657070.1:ENST00000665069.1:ENST00000651936.1:ENST00000652496.1:ENST00000653874.2:ENST00000661335.1:ENST00000664123.1:ENST00000658439.1:ENST00000666535.1:ENST00000652970.1:ENST00000423992.3:ENST00000665313.2:ENST00000651140.1:ENST00000660100.1:ENST00000693483.1:ENST00000656041.1:ENST00000657327.1:ENST00000664343.1:ENST00000656977.1:ENST00000671343.1:ENST00000659407.1:ENST00000671067.1:ENST00000660829.1:ENST00000671385.1	lncRNA	lncRNA	lncRNA	lncRNA	7	118	2	1.95422	3.130955	4.30769	0.00584847	1.28603e-5	0.0667594	0.00266147
chr6	3002786	3002881	2787876	0	+	0.421053	(0.408,0.44]	chr6	263222	1	INTRON	INTRON	NQO2	ENSG00000124588.22	ENST00000426637.5:ENST00000380472.7:ENST00000380455.11:ENST00000397717.7:ENST00000338130.7:ENST00000380441.5:ENST00000380454.8:ENST00000380430.6	protein_coding	protein_coding	protein_coding	protein_coding	4	85	2	2.7371	3.130905	3.52471	0.00112428	7.83328e-4	0.0306963	0.0257505
chr19	1208599	1208698	6994220	0	+	0.424242	(0.408,0.44]	chr19	692890	10	INTRON	INTRON	STK11	ENSG00000118046.17	ENST00000585748.2:ENST00000326873.12:ENST00000652231.1:ENST00000593219.5:ENST00000589152.5:ENST00000585851.1:ENST00000586358.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	53	2	2.89795	3.130865	3.36378	0.0110735	0.0016048	0.0873897	0.0367961
chr4	73173484	73173583	2159972	0	-	0.424242	(0.408,0.44]	chr4	212788	40	INTRON	INTRON	ANKRD17	ENSG00000132466.20	ENST00000358602.9:ENST00000558247.5:ENST00000330838.10:ENST00000509867.6:ENST00000561029.1:ENST00000559367.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	53	2	2.89795	3.130865	3.36378	0.0110735	0.0016048	0.0873897	0.0367961
chr17	75357893	75357993	6837320	0	-	0.46	(0.44,0.476]	chr17	675716	247	INTRON	INTRON	GRB2	ENSG00000177885.15	ENST00000316615.9:ENST00000316804.10:ENST00000392562.5:ENST00000392564.5:ENST00000392563.5:ENST00000648046.1:ENST00000578961.5:ENST00000582582.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	53	2	3.08591	3.130815	3.17572	0.00481262	0.00427037	0.0638089	0.0573912
chr5	109400934	109401034	2702282	0	-	0.43	(0.408,0.44]	chr5	254366	98	INTRON	INTRON	PJA2	ENSG00000198961.10	ENST00000361189.7:ENST00000511624.1:ENST00000512822.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	95	2	2.88913	3.1307850000000004	3.37244	0.00185044	1.2469e-4	0.0388609	0.00953295
chr1	246565525	246565625	680981	0	-	0.53	(0.515,0.57]	chr1	79829	3	SS5_PROX	SS5_PROX:INTRON	TFB2M	ENSG00000162851.8	ENST00000366514.5	protein_coding	protein_coding	protein_coding	protein_coding	2	46	2	2.83501	3.130725	3.42644	0.0117686	0.00106731	0.0894475	0.0300133
chr7	152155128	152155225	3678412	0	-	0.525773	(0.515,0.57]	chr7	341402	8	EXON_MRNA	EXON_MRNA:INTRON	KMT2C	ENSG00000055609.21	ENST00000360104.8:ENST00000262189.11:ENST00000418061.2:ENST00000680877.1:ENST00000424877.6:ENST00000679560.1:ENST00000682040.1:ENST00000683120.1:ENST00000681923.1:ENST00000679393.1:ENST00000683200.1:ENST00000680029.1:ENST00000683337.1:ENST00000683178.1:ENST00000683502.1:ENST00000684261.1:ENST00000682283.1:ENST00000473186.5:ENST00000684649.1:ENST00000679882.1:ENST00000684069.1:ENST00000684330.1:ENST00000683886.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	46	2	2.83501	3.130725	3.42644	0.0117686	0.00106731	0.0894475	0.0300133
chr1	19168934	19169034	386391	0	-	0.43	(0.408,0.44]	chr1	46011	1	SS5_PROX	SS5_PROX:INTRON	UBR4	ENSG00000127481.15	ENST00000375254.8:ENST00000419533.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	53	2	3.05705	3.1307099999999997	3.20437	0.00658331	0.00306596	0.0701901	0.0509893
chr22	19398986	19399086	7554093	0	-	0.44	(0.408,0.44]	chr22	772292	5	INTRON	INTRON	HIRA:C22orf39	ENSG00000100084.14:ENSG00000242259.9	ENST00000263208.5:ENST00000340170.8:ENST00000509549.5:ENST00000464189.5:ENST00000452818.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	53	2	3.05705	3.1307099999999997	3.20437	0.00658331	0.00306596	0.0701901	0.0509893
chr10	42360249	42360348	4603378	0	-	0.333333	(0.32,0.35]	chr10	424083	69	INTRON	INTRON	ENSG00000215146	ENSG00000215146.5	ENST00000609841.1:ENST00000650175.1:ENST00000609034.1:ENST00000609502.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	5	113	2	2.24224	3.1306499999999997	4.01906	0.00393422	1.78578e-4	0.0572563	0.0121697
chr9	112579543	112579643	4186717	0	+	0.23	[0,0.28]	chr9	381821	39	INTRON	INTRON	KIAA1958	ENSG00000165185.15	ENST00000337530.11:ENST00000536272.5:ENST00000374244.3	protein_coding	protein_coding	protein_coding	protein_coding	4	58	2	1.56918	3.130545	4.69191	0.0481076	0.0269474	0.171525	0.123442
chr12	122581358	122581452	5241160	0	+	0.521277	(0.515,0.57]	chr12	497747	3	INTRON	INTRON	KNTC1	ENSG00000184445.12	ENST00000450485.6:ENST00000333479.12	protein_coding	protein_coding	protein_coding	protein_coding	2	46	2	3.05839	3.130395	3.2024	0.00485936	0.00322022	0.0640618	0.0507087
chr17	37320350	37320450	6762179	0	-	0.52	(0.515,0.57]	chr17	664944	207	INTRON	INTRON	ACACA	ENSG00000278540.5	ENST00000616317.5:ENST00000614428.4:ENST00000613146.4:ENST00000615229.4:ENST00000621960.1:ENST00000617548.1:ENST00000616352.4:ENST00000614789.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	46	2	3.05839	3.130395	3.2024	0.00485936	0.00322022	0.0640618	0.0507087
chr1	65435609	65435708	137340	0	+	0.525253	(0.515,0.57]	chr1	15494	38	UTR3	UTR3:EXON_MRNA:INTRON	LEPR:LEPROT	ENSG00000116678.20:ENSG00000213625.9	ENST00000371060.7:ENST00000371059.7:ENST00000349533.11:ENST00000371065.9:ENST00000613538.1	protein_coding	protein_coding	protein_coding	protein_coding	3	61	2	2.6325	3.1303549999999998	3.62821	0.00439001	4.12866e-4	0.0585064	0.0181365
chr6	31835455	31835555	2843837	0	+	0.47	(0.44,0.476]	chr6	267906	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	SNHG32	ENSG00000204387.14	ENST00000375640.7:ENST00000375641.6:ENST00000375635.6:ENST00000375638.7:ENST00000648677.1:ENST00000375642.6:ENST00000614363.4:ENST00000395789.5:ENST00000375633.5	lncRNA	lncRNA	lncRNA	lncRNA	5	117	2	2.63962	3.1303549999999998	3.62109	0.00126329	5.11289e-5	0.0329641	0.0062158
chr19	29955190	29955289	7047683	0	+	0.575758	(0.57,1]	chr19	702657	122	INTRON	INTRON	URI1	ENSG00000105176.18	ENST00000360605.8:ENST00000570564.5:ENST00000574233.5:ENST00000392271.6:ENST00000574110.5:ENST00000574666.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	37	2	1.28607	3.130325	4.97458	0.0504184	2.67728e-4	0.174922	0.0149989
chr4	7013749	7013848	1923682	0	+	0.575758	(0.57,1]	chr4	193143	26	INTRON	INTRON	TBC1D14	ENSG00000132405.19	ENST00000448507.5:ENST00000409757.9:ENST00000410031.5:ENST00000451522.6:ENST00000446947.6	protein_coding	protein_coding	protein_coding	protein_coding	5	60	2	2.71391	3.13028	3.54665	6.82348e-4	2.33646e-5	0.0239168	0.00378116
chr16	22495307	22495407	6322558	0	+	0.52	(0.515,0.57]	chr16	605439	31	INTRON	INTRON	NPIPB5	ENSG00000243716.11	ENST00000415654.5:ENST00000415833.6:ENST00000546168.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	168	2	3.11685	3.130205	3.14356	3.41795e-5	7.05801e-6	0.00493498	0.00188467
chr7	65962839	65962938	3538022	0	-	0.444444	(0.44,0.476]	chr7	329987	14	INTRON	INTRON	GUSB	ENSG00000169919.17	ENST00000304895.9:ENST00000466883.5:ENST00000430730.5:ENST00000447929.5:ENST00000421103.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	42	2	1.55662	3.130085	4.70355	0.0688347	0.00383786	0.184298	0.0562562
chrX	53639159	53639258	7821427	0	-	0.323232	(0.32,0.35]	chrX	798209	45	INTRON	INTRON	HUWE1	ENSG00000086758.16	ENST00000262854.11:ENST00000342160.7:ENST00000612484.4:ENST00000218328.12	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	37	2	2.19668	3.129835	4.06299	0.0559439	0.021398	0.165463	0.123719
chr1	201989631	201989731	292577	0	+	0.54	(0.515,0.57]	chr1	33705	1	SS5_PROX	SS5_PROX:INTRON	RNPEP	ENSG00000176393.11	ENST00000481780.5:ENST00000295640.9:ENST00000367286.7:ENST00000487116.5:ENST00000492587.5:ENST00000471105.5:ENST00000447312.5:ENST00000478617.5:ENST00000479726.5:ENST00000492849.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	97	2	2.73346	3.12968	3.5259	8.38802e-4	4.10167e-5	0.0266487	0.00519615
chr1	42333024	42333124	432417	0	-	0.34	(0.32,0.35]	chr1	52343	88	INTRON	INTRON	FOXJ3	ENSG00000198815.9	ENST00000372573.5:ENST00000372572.5:ENST00000361776.5:ENST00000361346.6:ENST00000445886.5	protein_coding	protein_coding	protein_coding	protein_coding	1	26	2	2.31405	3.12967	3.94529	0.0693433	0.0517107	0.184298	0.176696
chr1	213089388	213089488	311085	0	+	0.35	(0.32,0.35]	chr1	35919	112	INTRON	INTRON	RPS6KC1	ENSG00000136643.12	ENST00000615329.4:ENST00000543354.5:ENST00000614059.4:ENST00000543470.5:ENST00000366960.8:ENST00000366959.4:ENST00000490299.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	26	2	2.31405	3.12967	3.94529	0.0693433	0.0517107	0.184298	0.176696
chr10	97265475	97265571	4674890	0	-	0.322917	(0.32,0.35]	chr10	430810	2	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	ARHGAP19	ENSG00000213390.11	ENST00000492211.5:ENST00000358308.7:ENST00000358531.9:ENST00000371027.5:ENST00000466484.1:ENST00000493068.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	26	2	2.31405	3.12967	3.94529	0.0693433	0.0517107	0.184298	0.176696
chr12	50563108	50563208	5137731	0	+	0.34	(0.32,0.35]	chr12	484468	575	INTRON	INTRON	DIP2B	ENSG00000066084.13	ENST00000301180.10:ENST00000549620.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	26	2	2.31405	3.12967	3.94529	0.0693433	0.0517107	0.184298	0.176696
chr13	41352744	41352844	5474640	0	+	0.34	(0.32,0.35]	chr13	524481	156	INTRON	INTRON	NAA16	ENSG00000172766.19	ENST00000379406.8:ENST00000403412.7:ENST00000476980.5:ENST00000464857.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	26	2	2.31405	3.12967	3.94529	0.0693433	0.0517107	0.184298	0.176696
chr19	4393270	4393368	7120056	0	-	0.336735	(0.32,0.35]	chr19	716287	28	INTRON	INTRON	SH3GL1	ENSG00000141985.9	ENST00000269886.7:ENST00000598564.5:ENST00000417295.6:ENST00000598219.1	protein_coding	protein_coding	protein_coding	protein_coding	1	26	2	2.31405	3.12967	3.94529	0.0693433	0.0517107	0.184298	0.176696
chr2	144494164	144494264	1241546	0	-	0.34	(0.32,0.35]	chr2	131732	120	INTRON	INTRON	ZEB2	ENSG00000169554.23	ENST00000636471.1:ENST00000627532.3:ENST00000638128.1:ENST00000637304.1:ENST00000636179.1:ENST00000419938.5:ENST00000409487.7:ENST00000636732.2:ENST00000636026.2:ENST00000675069.1:ENST00000689298.1:ENST00000539609.7:ENST00000558170.6:ENST00000303660.8:ENST00000427902.5:ENST00000637267.2:ENST00000392861.6:ENST00000431672.4:ENST00000409211.5:ENST00000465308.5:ENST00000434448.5:ENST00000472146.5:ENST00000461784.3:ENST00000476394.5:ENST00000637591.2:ENST00000479735.1:ENST00000453352.5:ENST00000435831.5:ENST00000444559.5:ENST00000630572.2:ENST00000484313.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	26	2	2.31405	3.12967	3.94529	0.0693433	0.0517107	0.184298	0.176696
chr3	43445126	43445226	1673665	0	-	0.34	(0.32,0.35]	chr3	170972	120	INTRON	INTRON	ANO10	ENSG00000160746.13	ENST00000292246.8:ENST00000350459.8:ENST00000396091.7:ENST00000414522.6:ENST00000451430.6:ENST00000448045.1	protein_coding	protein_coding	protein_coding	protein_coding	1	26	2	2.31405	3.12967	3.94529	0.0693433	0.0517107	0.184298	0.176696
chr6	20891453	20891553	2831961	0	+	0.34	(0.32,0.35]	chr6	265679	449	INTRON	INTRON	CDKAL1	ENSG00000145996.11	ENST00000274695.8:ENST00000378610.1	protein_coding	protein_coding	protein_coding	protein_coding	1	26	2	2.31405	3.12967	3.94529	0.0693433	0.0517107	0.184298	0.176696
chr7	151487576	151487675	3674601	0	-	0.343434	(0.32,0.35]	chr7	341195	24	INTRON	INTRON	RHEB	ENSG00000106615.10	ENST00000262187.10:ENST00000472642.5:ENST00000478470.5:ENST00000496004.5:ENST00000470370.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	26	2	2.31405	3.12967	3.94529	0.0693433	0.0517107	0.184298	0.176696
chr3	177184784	177184884	1872322	0	-	0.37	(0.35,0.378]	chr3	187438	135	INTRON	INTRON	TBL1XR1	ENSG00000177565.18	ENST00000457928.7:ENST00000430069.5:ENST00000673974.1:ENST00000352800.10:ENST00000422442.6:ENST00000428970.5:ENST00000424913.5:ENST00000437738.5:ENST00000431421.5:ENST00000635794.1:ENST00000630796.2:ENST00000450267.5:ENST00000630833.2:ENST00000431674.5:ENST00000422066.5:ENST00000443315.5:ENST00000627825.2:ENST00000427349.5:ENST00000413084.5:ENST00000637137.1:ENST00000491623.2:ENST00000637544.1:ENST00000636187.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	12	271	2	2.93172	3.1296549999999996	3.32759	2.32368e-5	8.76708e-6	0.00394058	0.00212811
chr9	19296446	19296546	4105510	0	+	0.55	(0.515,0.57]	chr9	373925	2	SS5_PROX	SS5_PROX:INTRON	DENND4C	ENSG00000137145.21	ENST00000602925.5:ENST00000434457.7:ENST00000380437.8:ENST00000494124.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	35	2	1.7492	3.1296	4.51	0.0382504	0.00809449	0.15832	0.0766625
chr5	37486274	37486374	2341465	0	+	0.3	(0.28,0.32]	chr5	226248	59	INTRON	INTRON	WDR70	ENSG00000082068.9	ENST00000504564.1:ENST00000511906.5:ENST00000265107.9:ENST00000510699.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	66	2	3.08462	3.129575	3.17453	0.0078976	0.00429297	0.076155	0.0599065
chr10	63376632	63376732	4634497	0	-	0.33	(0.32,0.35]	chr10	426230	32	INTRON	INTRON	JMJD1C	ENSG00000171988.20	ENST00000399262.7:ENST00000633035.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	63	2	2.90786	3.12951	3.35116	0.00993008	0.00283808	0.0877296	0.0473151
chr21	37076645	37076744	7404854	0	+	0.353535	(0.35,0.378]	chr21	754521	28	INTRON	INTRON	TTC3	ENSG00000182670.14	ENST00000492275.6:ENST00000418766.6:ENST00000485402.5:ENST00000450533.6:ENST00000438055.5:ENST00000696812.1:ENST00000696811.1:ENST00000463216.6:ENST00000481605.6:ENST00000540756.5:ENST00000494243.5:ENST00000399010.5:ENST00000411496.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	172	2	2.90227	3.1295	3.35673	5.81688e-4	7.96465e-6	0.0223753	0.0020223
chr15	68224423	68224523	6214206	0	-	0.49	(0.476,0.515]	chr15	592968	54	INTRON	INTRON	ENSG00000260007:CLN6	ENSG00000260007.3:ENSG00000128973.13	ENST00000637888.1:ENST00000562767.2:ENST00000637054.1:ENST00000249806.11:ENST00000638076.1:ENST00000565471.6:ENST00000567060.5:ENST00000566347.5:ENST00000538696.5:ENST00000635747.1:ENST00000637494.1:ENST00000638144.1:ENST00000636212.1:ENST00000637823.1:ENST00000637450.1:ENST00000637667.1:ENST00000564752.1:ENST00000563917.2:ENST00000636314.1:ENST00000637223.1:ENST00000564846.1:ENST00000636020.1:ENST00000636876.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	35	2	1.92984	3.1294950000000004	4.32915	0.0466474	0.0124637	0.151522	0.0973643
chr1	229498706	229498806	653230	0	-	0.36	(0.35,0.378]	chr1	77384	4	SS3_PROX	SS3_PROX:INTRON	NUP133	ENSG00000069248.12	ENST00000261396.6	protein_coding	protein_coding	protein_coding	protein_coding	2	35	2	2.17079	3.1294750000000002	4.08816	0.046021	0.0225978	0.149888	0.124921
chr3	161237512	161237612	1546358	0	+	0.36	(0.35,0.378]	chr3	160847	19	INTRON	INTRON	NMD3	ENSG00000169251.13	ENST00000493066.5:ENST00000472947.5:ENST00000351193.7:ENST00000463518.5:ENST00000460469.1	protein_coding	protein_coding	protein_coding	protein_coding	2	35	2	2.17079	3.1294750000000002	4.08816	0.046021	0.0225978	0.149888	0.124921
chr3	9925088	9925187	1361723	0	+	0.494949	(0.476,0.515]	chr3	143284	4	INTRON	INTRON	IL17RC	ENSG00000163702.21	ENST00000383812.9:ENST00000416074.6:ENST00000483582.5:ENST00000403601.8:ENST00000295981.7:ENST00000451231.5:ENST00000498214.6:ENST00000438091.6:ENST00000466046.5:ENST00000469686.6:ENST00000412901.6:ENST00000434756.5:ENST00000696815.1:ENST00000494365.5:ENST00000696816.1:ENST00000696823.1:ENST00000696824.1:ENST00000696825.1:ENST00000696826.1:ENST00000696827.1:ENST00000696828.1:ENST00000451165.7:ENST00000696822.1:ENST00000696818.1:ENST00000696819.1:ENST00000696820.1:ENST00000696821.1:ENST00000696817.1:ENST00000696829.1:ENST00000436503.6:ENST00000451271.5:ENST00000696830.1:ENST00000455057.5:ENST00000696832.1:ENST00000413608.2:ENST00000464406.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	53	2	2.7646	3.1293550000000003	3.49411	0.0162075	9.23453e-4	0.101453	0.0278392
chr3	42633015	42633112	1406307	0	+	0.391753	(0.378,0.408]	chr3	147690	3	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NKTR	ENSG00000114857.19	ENST00000468735.6:ENST00000429888.5:ENST00000232978.13:ENST00000465584.5:ENST00000498730.5:ENST00000472127.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	148	2	1.74499	3.129335	4.51368	0.00577956	9.43478e-6	0.0684334	0.00236268
chr11	9235165	9235264	4908770	0	-	0.393939	(0.378,0.408]	chr11	460107	272	INTRON	INTRON	DENND5A	ENSG00000184014.9	ENST00000328194.8:ENST00000681203.1:ENST00000530780.2:ENST00000679999.1:ENST00000680470.1:ENST00000680554.1:ENST00000681425.1:ENST00000679568.1:ENST00000679446.1:ENST00000680294.1:ENST00000680742.1:ENST00000680885.1:ENST00000530044.5:ENST00000526707.5:ENST00000532696.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	33	2	2.04292	3.129275	4.21563	0.0326035	0.0315429	0.145164	0.13151
chr17	59625253	59625353	6641616	0	+	0.37	(0.35,0.378]	chr17	648527	47	INTRON	INTRON	CLTC	ENSG00000141367.12	ENST00000621829.4:ENST00000393043.5:ENST00000269122.8:ENST00000580081.1:ENST00000579456.5:ENST00000584313.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	57	2	2.99044	3.12919	3.26794	0.00894806	0.00257067	0.0799922	0.0466761
chr22	21972414	21972512	7561920	0	-	0.612245	(0.57,1]	chr22	773535	3	EXON_MRNA	EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TOP3B	ENSG00000100038.20	ENST00000357179.10:ENST00000457179.5:ENST00000444502.5:ENST00000398793.6:ENST00000424393.5:ENST00000437929.5:ENST00000430142.5:ENST00000489581.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	51	2	2.95123	3.12903	3.30683	8.39007e-4	1.13407e-4	0.0263691	0.00957524
chr1	100288902	100289002	172503	0	+	0.5	(0.476,0.515]	chr1	18774	13	INTRON	INTRON	RTCA	ENSG00000137996.13	ENST00000370128.9:ENST00000260563.4	protein_coding	protein_coding	protein_coding	protein_coding	2	53	2	3.01197	3.128965	3.24596	0.00633162	0.00322919	0.0722266	0.0507087
chr20	37087296	37087395	7339483	0	-	0.484848	(0.476,0.515]	chr20	747929	49	INTRON	INTRON	RBL1	ENSG00000080839.12	ENST00000373664.8:ENST00000344359.7:ENST00000527999.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	53	2	3.01197	3.128965	3.24596	0.00633162	0.00322919	0.0722266	0.0507087
chr21	42854926	42855026	7467660	0	-	0.49	(0.476,0.515]	chr21	760948	3	SS3_PROX	SS3_PROX:INTRON	WDR4	ENSG00000160193.12	ENST00000330317.6:ENST00000476326.5:ENST00000398208.3:ENST00000492742.5:ENST00000479429.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	101	2	2.55236	3.128945	3.70553	0.00104106	3.44823e-4	0.0293739	0.0165103
chr2	3477948	3478024	686752	0	+	0.394737	(0.378,0.408]	chr2	80561	3	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	TRAPPC12	ENSG00000171853.16	ENST00000382110.6:ENST00000324266.10:ENST00000417243.5:ENST00000433382.5:ENST00000415624.5:ENST00000497597.5:ENST00000473348.5:ENST00000461577.5:ENST00000489032.5:ENST00000437733.5:ENST00000416918.5:ENST00000469400.1:ENST00000452495.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	57	2	2.85854	3.1286300000000002	3.39872	0.0107837	0.0019852	0.0920575	0.0404516
chr2	10127086	10127153	690761	0	+	0.447761	(0.44,0.476]	chr2	81074	1	CDS	CDS:EXON_MRNA	RRM2	ENSG00000171848.16	ENST00000641198.1:ENST00000360566.6:ENST00000652660.1:ENST00000641498.1:ENST00000304567.10:ENST00000615152.5:ENST00000487591.5:ENST00000462343.1:ENST00000485717.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	115	2	2.97419	3.1285	3.28281	3.31666e-4	2.0352e-4	0.0168836	0.0124395
chr22	20082063	20082160	7478247	0	+	0.536082	(0.515,0.57]	chr22	762700	10	INTRON	INTRON	DGCR8	ENSG00000128191.16	ENST00000383024.6:ENST00000351989.8:ENST00000457069.1	protein_coding	protein_coding	protein_coding	protein_coding	16	292	2	2.99456	3.12838	3.2622	2.26621e-6	1.23609e-6	0.00104829	6.48319e-4
chr5	75338894	75338985	2390849	0	+	0.340659	(0.32,0.35]	chr5	230897	2	INTRON	INTRON	HMGCR	ENSG00000113161.17	ENST00000511206.5:ENST00000679456.1:ENST00000680160.1:ENST00000287936.9:ENST00000681567.1:ENST00000343975.9:ENST00000509431.1:ENST00000680940.1:ENST00000681271.1:ENST00000681410.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	112	2	2.66302	3.12837	3.59372	0.00542632	4.81573e-5	0.0645052	0.00566695
chr5	138211114	138211212	2731701	0	-	0.387755	(0.378,0.408]	chr5	257262	41	INTRON	INTRON	CDC23	ENSG00000094880.11	ENST00000394886.7:ENST00000482948.5:ENST00000483961.6:ENST00000511383.5:ENST00000394884.7:ENST00000505120.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	39	2	1.59317	3.128275	4.66338	0.0603812	0.0103469	0.19151	0.0850389
chr6	135035358	135035457	3225273	0	-	0.50505	(0.476,0.515]	chr6	299841	83	INTRON	INTRON	HBS1L	ENSG00000112339.15	ENST00000367837.10:ENST00000415177.6:ENST00000367826.6:ENST00000533274.5:ENST00000526100.5:ENST00000314674.7:ENST00000524715.5:ENST00000529882.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	97	2	2.2344	3.128245	4.02209	0.00432475	6.68973e-5	0.0579331	0.00677892
chr6	85620211	85620310	3151217	0	-	0.383838	(0.378,0.408]	chr6	293877	4	INTRON	INTRON	ENSG00000271793:SYNCRIP	ENSG00000271793.2:ENSG00000135316.19	ENST00000682083.1:ENST00000683074.1:ENST00000681965.1:ENST00000682504.1:ENST00000682106.1:ENST00000683364.1:ENST00000683436.1:ENST00000684220.1:ENST00000683909.1:ENST00000684462.1:ENST00000616122.5:ENST00000678528.1:ENST00000676637.1:ENST00000677771.1:ENST00000355238.11:ENST00000678878.1:ENST00000677481.1:ENST00000677646.1:ENST00000676630.1:ENST00000678618.1:ENST00000676542.1:ENST00000677059.1:ENST00000444272.2:ENST00000678899.1:ENST00000369622.8:ENST00000678355.1:ENST00000676688.1:ENST00000677514.1:ENST00000678816.1:ENST00000678930.1:ENST00000678589.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	24	530	2	3.09817	3.12824	3.15831	2.65778e-6	2.35686e-7	0.00115411	2.32402e-4
chrX	73964171	73964268	7682299	0	+	0.43299	(0.408,0.44]	chrX	786634	10	INTRON	INTRON	JPX	ENSG00000225470.8	ENST00000664637.1:ENST00000639185.1:ENST00000655090.1:ENST00000640437.1:ENST00000660546.1:ENST00000667886.1:ENST00000660840.1:ENST00000657179.1:ENST00000670506.1:ENST00000657910.1:ENST00000662120.1:ENST00000671207.1:ENST00000659254.1:ENST00000656624.1:ENST00000667573.1:ENST00000660856.1:ENST00000660836.1:ENST00000668590.1:ENST00000658649.1:ENST00000414209.6:ENST00000654137.1:ENST00000670994.1:ENST00000653479.1:ENST00000602772.5:ENST00000655879.1:ENST00000657372.1:ENST00000657096.1:ENST00000602985.6:ENST00000670685.1:ENST00000670503.1:ENST00000663027.1:ENST00000654995.1:ENST00000602895.6:ENST00000654374.1:ENST00000660087.1:ENST00000665032.1:ENST00000671336.1:ENST00000671476.1:ENST00000667057.1:ENST00000670192.1:ENST00000670464.1:ENST00000665345.1:ENST00000661546.1:ENST00000662543.1:ENST00000602938.6:ENST00000664295.1:ENST00000654005.1:ENST00000669149.1:ENST00000659852.1:ENST00000656509.1:ENST00000602294.6:ENST00000667294.1:ENST00000663470.1:ENST00000602920.6:ENST00000671021.1:ENST00000659849.1:ENST00000667937.1:ENST00000661130.1:ENST00000654196.1:ENST00000655994.1:ENST00000659373.1:ENST00000662239.1:ENST00000670805.1:ENST00000656263.1:ENST00000653069.1:ENST00000657638.1:ENST00000653808.1:ENST00000653929.1:ENST00000653885.1:ENST00000659023.1:ENST00000602546.5:ENST00000659622.1:ENST00000671518.1:ENST00000670408.1	lncRNA	lncRNA	lncRNA	lncRNA	4	96	2	3.05533	3.12771	3.20009	6.50769e-4	4.59843e-4	0.0231135	0.01978
chr6	5260733	5260805	3050080	0	-	0.472222	(0.44,0.476]	chr6	283852	1	UTR5	UTR5:EXON_MRNA	LYRM4	ENSG00000214113.11	ENST00000330636.9:ENST00000468929.5:ENST00000480566.5:ENST00000500576.4	protein_coding	protein_coding	protein_coding	protein_coding	6	129	2	2.73418	3.12768	3.52118	3.00142e-4	8.78761e-5	0.0155054	0.00842539
chr18	2718834	2718934	6865519	0	+	0.37	(0.35,0.378]	chr18	680042	4	SS5_PROX	SS5_PROX:INTRON	SMCHD1	ENSG00000101596.17	ENST00000320876.11:ENST00000688342.1:ENST00000693213.1:ENST00000577880.5:ENST00000584897.5:ENST00000581711.1:ENST00000583441.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	92	2	2.46611	3.127615	3.78912	0.00297318	4.25686e-4	0.0501309	0.0189958
chr1	17024772	17024871	384340	0	-	0.424242	(0.408,0.44]	chr1	45394	3	INTRON	INTRON	SDHB	ENSG00000117118.10	ENST00000375499.8:ENST00000485515.5:ENST00000491274.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	71	2	2.69457	3.12757	3.56057	0.00331036	9.67143e-4	0.0527031	0.0282401
chr1	246555277	246555376	680875	0	-	0.484848	(0.476,0.515]	chr1	79810	36	INTRON	INTRON	TFB2M	ENSG00000162851.8	ENST00000366514.5	protein_coding	protein_coding	protein_coding	protein_coding	2	54	2	2.87879	3.127555	3.37632	0.00999149	0.00195267	0.0879541	0.0400465
chr17	27114709	27114809	6579972	0	+	0.5	(0.476,0.515]	chr17	639586	179	INTRON	INTRON	ENSG00000285822	ENSG00000285822.1	ENST00000649401.1	lncRNA	lncRNA	lncRNA	lncRNA	2	54	2	2.87879	3.127555	3.37632	0.00999149	0.00195267	0.0879541	0.0400465
chr3	129180994	129181094	1815301	0	-	0.49	(0.476,0.515]	chr3	182484	89	INTRON	INTRON	CNBP	ENSG00000169714.17	ENST00000422453.7:ENST00000502976.5:ENST00000451728.6:ENST00000446936.6:ENST00000504813.5:ENST00000500450.6:ENST00000441626.6:ENST00000502372.1:ENST00000512338.1:ENST00000507573.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	54	2	2.87879	3.127555	3.37632	0.00999149	0.00195267	0.0879541	0.0400465
chr16	71926713	71926813	6386940	0	+	0.4	(0.378,0.408]	chr16	614141	15	INTRON	INTRON	IST1	ENSG00000182149.21	ENST00000544564.5:ENST00000541571.6:ENST00000535424.5:ENST00000606369.5:ENST00000378799.11:ENST00000538565.5:ENST00000329908.12:ENST00000538850.5:ENST00000378798.9:ENST00000439924.6:ENST00000456820.2:ENST00000536027.1:ENST00000541180.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	53	2	1.67073	3.1275	4.58427	0.0219426	0.0128325	0.123836	0.0926667
chrX	73973468	73973567	7682393	0	+	0.353535	(0.35,0.378]	chrX	786638	51	INTRON	INTRON	JPX	ENSG00000225470.8	ENST00000664637.1:ENST00000639185.1:ENST00000655090.1:ENST00000640437.1:ENST00000660546.1:ENST00000667886.1:ENST00000660840.1:ENST00000657179.1:ENST00000670506.1:ENST00000657910.1:ENST00000662120.1:ENST00000671207.1:ENST00000659254.1:ENST00000656624.1:ENST00000667573.1:ENST00000660856.1:ENST00000660836.1:ENST00000668590.1:ENST00000658649.1:ENST00000414209.6:ENST00000654137.1:ENST00000670994.1:ENST00000602772.5:ENST00000655879.1:ENST00000657372.1:ENST00000657096.1:ENST00000602985.6:ENST00000670685.1:ENST00000670503.1:ENST00000663027.1:ENST00000654995.1:ENST00000602895.6:ENST00000654374.1:ENST00000660087.1:ENST00000665032.1:ENST00000671336.1:ENST00000671476.1:ENST00000667057.1:ENST00000670192.1:ENST00000670464.1:ENST00000665345.1:ENST00000661546.1:ENST00000662543.1:ENST00000602938.6:ENST00000664295.1:ENST00000654005.1:ENST00000669149.1:ENST00000659852.1:ENST00000656509.1:ENST00000602294.6:ENST00000667294.1:ENST00000663470.1:ENST00000602920.6:ENST00000671021.1:ENST00000659849.1:ENST00000667937.1:ENST00000661130.1:ENST00000654196.1:ENST00000655994.1:ENST00000659373.1:ENST00000662239.1:ENST00000670805.1:ENST00000656263.1:ENST00000653069.1:ENST00000657638.1:ENST00000653808.1:ENST00000653929.1:ENST00000653885.1:ENST00000659023.1:ENST00000602546.5:ENST00000659622.1:ENST00000671518.1:ENST00000670408.1	lncRNA	lncRNA	lncRNA	lncRNA	2	57	2	3.03814	3.127455	3.21677	0.00767003	0.00313804	0.075364	0.0514466
chr3	197832617	197832717	1598140	0	+	0.28	[0,0.28]	chr3	165606	3	SS5_PROX	SS5_PROX:INTRON	LRCH3	ENSG00000186001.14	ENST00000438796.6:ENST00000428136.2:ENST00000425562.7:ENST00000441090.6:ENST00000414675.6:ENST00000334859.8	protein_coding	protein_coding	protein_coding	protein_coding	6	158	2	2.58398	3.12739	3.6708	0.00133013	6.41204e-4	0.0334189	0.0228915
chr19	55039825	55039921	7212056	0	-	0.291667	(0.28,0.32]	chr19	732218	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RDH13	ENSG00000160439.16	ENST00000592423.1:ENST00000591960.1:ENST00000586331.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	2	43	2	1.91611	3.12737	4.33863	0.0539102	0.0207276	0.164153	0.122348
chr20	44519714	44519814	7345038	0	-	0.47	(0.44,0.476]	chr20	748682	3	SS3_PROX	SS3_PROX:INTRON	SERINC3	ENSG00000132824.14	ENST00000255175.5:ENST00000342374.5:ENST00000468234.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	96	2	2.35576	3.127355	3.89895	0.00208591	2.02261e-4	0.0424672	0.0129814
chr8	102326045	102326145	4011876	0	-	0.39	(0.378,0.408]	chr8	367178	1	SS5_PROX	SS5_PROX:INTRON	UBR5	ENSG00000104517.13	ENST00000520539.6:ENST00000220959.8:ENST00000521922.5	protein_coding	protein_coding	protein_coding	protein_coding	5	100	2	2.54736	3.127325	3.70729	8.3709e-4	5.5156e-4	0.0263691	0.0216014
chr1	96805727	96805826	168793	0	+	0.323232	(0.32,0.35]	chr1	18253	9	EXON_MRNA	EXON_MRNA:INTRON	PTBP2	ENSG00000117569.19	ENST00000482253.5:ENST00000675735.1:ENST00000609116.5:ENST00000674951.1:ENST00000675080.1:ENST00000426398.3:ENST00000370197.5:ENST00000370198.5:ENST00000476419.5:ENST00000676292.1:ENST00000676096.1:ENST00000675365.1:ENST00000674579.1:ENST00000675401.1:ENST00000459735.5:ENST00000476783.5:ENST00000492905.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	98	2	2.50411	3.1273099999999996	3.75051	0.00267989	5.8762e-4	0.0478767	0.0224695
chr11	68551486	68551586	4818253	0	+	0.53	(0.515,0.57]	chr11	448964	3	SS5_PROX	SS5_PROX:INTRON	PPP6R3	ENSG00000110075.15	ENST00000529907.5:ENST00000534534.5:ENST00000524845.5:ENST00000393800.7:ENST00000265637.8:ENST00000524904.5:ENST00000393801.7:ENST00000265636.9:ENST00000529710.5:ENST00000527403.6	protein_coding	protein_coding	protein_coding	protein_coding	19	345	2	2.95552	3.12728	3.29904	4.35918e-6	8.56309e-8	0.00152498	1.25522e-4
chr5	54039607	54039707	2618200	0	-	0.45	(0.44,0.476]	chr5	248835	1276	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	84	2	2.67227	3.12723	3.58219	0.0010793	8.57842e-4	0.0300133	0.0267428
chr7	152415537	152415637	3681089	0	-	0.43	(0.408,0.44]	chr7	341660	565	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000682301.1:ENST00000452749.2:ENST00000680867.1:ENST00000683800.1:ENST00000684278.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	45	2	1.6546400000000001	3.1272149999999996	4.59979	0.0329965	0.0109537	0.145298	0.0873034
chr6	149667522	149667621	3246223	0	-	0.343434	(0.32,0.35]	chr6	301614	49	INTRON	INTRON	LATS1	ENSG00000131023.13	ENST00000543571.6:ENST00000253339.9:ENST00000441107.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	61	2	3.12146	3.127115	3.13277	0.00630799	0.00458313	0.0687526	0.0622676
chr22	49604755	49604855	7602128	0	-	0.31	(0.28,0.32]	chr22	778570	91	INTRON	INTRON	MIR3667HG	ENSG00000188511.13	ENST00000414287.5:ENST00000416411.1:ENST00000689875.1	lncRNA	lncRNA	lncRNA	lncRNA	5	145	2	2.52281	3.12702	3.73123	0.00385251	2.76848e-5	0.0542786	0.00415129
chr1	229266535	229266634	652343	0	-	0.272727	[0,0.28]	chr1	77229	27	EXON_LNCRNA	EXON_LNCRNA:INTRON	ENSG00000177788	ENSG00000177788.7	ENST00000654028.1:ENST00000653511.1:ENST00000656366.1:ENST00000429227.1:ENST00000660017.1	lncRNA	lncRNA	lncRNA	lncRNA	3	108	2	2.33097	3.127015	3.92306	0.0158969	5.0483e-4	0.109464	0.0208144
chr22	22320050	22320150	7483055	0	+	0.5	(0.476,0.515]	chr22	763475	4	INTRON	INTRON	ENSG00000286129	ENSG00000286129.1	ENST00000652112.1	lncRNA	lncRNA	lncRNA	lncRNA	11	239	2	2.95851	3.126945	3.29538	1.71976e-5	7.41064e-6	0.00315585	0.00205092
chr19	11851909	11852009	7019153	0	+	0.43	(0.408,0.44]	chr19	697830	9	INTRON	INTRON	ZNF439	ENSG00000171291.9	ENST00000682736.1:ENST00000455282.1:ENST00000592534.1:ENST00000442091.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	26	2	2.27698	3.1268849999999997	3.97679	0.0583528	0.0299485	0.167723	0.142135
chr3	12508332	12508431	1367527	0	+	0.414141	(0.408,0.44]	chr3	144017	11	INTRON	INTRON	TSEN2	ENSG00000154743.19	ENST00000681482.1:ENST00000446004.6:ENST00000679699.1:ENST00000681713.1:ENST00000680458.1:ENST00000680923.1:ENST00000679670.1:ENST00000680817.1:ENST00000412698.3:ENST00000455118.6:ENST00000680765.1:ENST00000415684.6:ENST00000681343.1:ENST00000679424.1:ENST00000680126.1:ENST00000679756.1:ENST00000475595.2:ENST00000681433.1:ENST00000680376.1:ENST00000680873.1:ENST00000681073.1:ENST00000454502.6:ENST00000284995.11:ENST00000402228.7:ENST00000680275.1:ENST00000679995.1:ENST00000681676.1:ENST00000473755.5:ENST00000679492.1:ENST00000681042.1:ENST00000680857.1:ENST00000679690.1:ENST00000679555.1:ENST00000681140.1:ENST00000679425.1:ENST00000680264.1:ENST00000680449.1:ENST00000681471.1:ENST00000680598.1:ENST00000679693.1:ENST00000679876.1:ENST00000444864.6:ENST00000679367.1:ENST00000681268.1:ENST00000680421.1:ENST00000680555.1:ENST00000679785.1:ENST00000679835.1:ENST00000680943.1:ENST00000681227.1:ENST00000680419.1:ENST00000680172.1:ENST00000680986.1:ENST00000680354.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	26	2	2.27698	3.1268849999999997	3.97679	0.0583528	0.0299485	0.167723	0.142135
chr6	4871296	4871396	2791812	0	+	0.43	(0.408,0.44]	chr6	263602	346	INTRON	INTRON	CDYL	ENSG00000153046.18	ENST00000328908.9:ENST00000491864.1:ENST00000440139.5:ENST00000483019.1:ENST00000397588.8:ENST00000472453.5:ENST00000449732.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	26	2	2.27698	3.1268849999999997	3.97679	0.0583528	0.0299485	0.167723	0.142135
chr6	5634416	5634516	2796406	0	+	0.44	(0.408,0.44]	chr6	263693	207	INTRON	INTRON	FARS2	ENSG00000145982.13	ENST00000324331.10:ENST00000648580.1:ENST00000274680.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	26	2	2.27698	3.1268849999999997	3.97679	0.0583528	0.0299485	0.167723	0.142135
chr14	30975994	30976094	5857369	0	-	0.29	(0.28,0.32]	chr14	556508	116	INTRON	INTRON	STRN3	ENSG00000196792.12	ENST00000355683.9:ENST00000357479.10:ENST00000555358.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	62	2	1.66498	3.126865	4.58875	0.0244852	0.0230574	0.131869	0.118056
chr20	50890053	50890149	7355458	0	-	0.291667	(0.28,0.32]	chr20	750075	2	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	ADNP	ENSG00000101126.18	ENST00000371602.9:ENST00000621696.5:ENST00000673732.1:ENST00000396029.8:ENST00000644386.1	protein_coding	protein_coding	protein_coding	protein_coding	4	109	2	2.28714	3.126845	3.96655	0.00696126	2.88499e-4	0.0754576	0.0156418
chr2	9534346	9534445	1064270	0	-	0.474747	(0.44,0.476]	chr2	113529	42	INTRON	INTRON	ADAM17	ENSG00000151694.14	ENST00000310823.8:ENST00000648548.1:ENST00000649227.1:ENST00000648857.1:ENST00000647979.1:ENST00000647610.1:ENST00000650116.1:ENST00000649686.1:ENST00000647622.1:ENST00000649972.1:ENST00000650241.1:ENST00000618923.2:ENST00000478059.1:ENST00000648002.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	55	2	2.5364	3.126835	3.71727	0.0309324	3.2089e-4	0.13151	0.0159645
chr7	23512095	23512194	3503752	0	-	0.363636	(0.35,0.378]	chr7	326946	42	INTRON	INTRON	TRA2A	ENSG00000164548.12	ENST00000297071.9:ENST00000392502.8:ENST00000538367.6:ENST00000621813.4:ENST00000494255.5:ENST00000474586.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	50	2	1.86055	3.12679	4.39303	0.0237246	0.0168498	0.118716	0.11068
chr19	47623795	47623895	7085909	0	+	0.43	(0.408,0.44]	chr19	709045	158	INTRON	INTRON	ENSG00000268746	ENSG00000268746.1	ENST00000599924.1	lncRNA	lncRNA	lncRNA	lncRNA	2	53	2	3.10641	3.126735	3.14706	0.00555646	0.00382411	0.0648867	0.0562562
chr22	21982637	21982725	7562027	0	-	0.681818	(0.57,1]	chr22	773555	6	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TOP3B	ENSG00000100038.20	ENST00000357179.10:ENST00000457179.5:ENST00000444502.5:ENST00000398793.6:ENST00000424393.5:ENST00000437929.5:ENST00000430142.5:ENST00000456075.5:ENST00000449704.5:ENST00000437103.1:ENST00000434517.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	61	2	2.64903	3.12671	3.60439	9.85026e-4	1.64192e-5	0.0288488	0.00324999
chr5	149503371	149503471	2750586	0	-	0.37	(0.35,0.378]	chr5	259005	22	EXON_MRNA	EXON_MRNA:INTRON	CSNK1A1:ENSG00000230551	ENSG00000113712.19:ENSG00000230551.4	ENST00000261798.10:ENST00000377843.8:ENST00000657001.1:ENST00000499521.2:ENST00000515768.6:ENST00000606719.6:ENST00000657462.1:ENST00000661952.1:ENST00000504676.5:ENST00000515435.5:ENST00000662268.1:ENST00000657706.1:ENST00000606826.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	142	2	2.36933	3.12667	3.88401	0.00285204	7.02307e-6	0.0474836	0.00188004
chr1	28955348	28955448	59364	0	+	0.52	(0.515,0.57]	chr1	7621	402	INTRON	INTRON	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000647918.1:ENST00000646800.1:ENST00000644342.1:ENST00000646189.1:ENST00000482464.6:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000646260.1:ENST00000373798.5:ENST00000644600.1:ENST00000649674.1:ENST00000643173.1:ENST00000343067.9:ENST00000644780.1:ENST00000650265.1:ENST00000648181.1:ENST00000643604.1:ENST00000648891.1:ENST00000373797.2:ENST00000349460.9:ENST00000645184.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	123	2	2.50471	3.12666	3.74861	4.33065e-4	1.50679e-5	0.0186938	0.00311444
chr8	119832012	119832106	4040060	0	-	0.638298	(0.57,1]	chr8	368410	4	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TAF2	ENSG00000064313.13	ENST00000378164.7:ENST00000685503.1:ENST00000690808.1:ENST00000692707.1:ENST00000685202.1:ENST00000688645.1:ENST00000685684.1:ENST00000689399.1:ENST00000685876.1:ENST00000689341.1:ENST00000691057.1:ENST00000686098.1:ENST00000690922.1:ENST00000685663.1:ENST00000692518.1:ENST00000688037.1:ENST00000691237.1:ENST00000684862.1:ENST00000685755.1:ENST00000691880.1:ENST00000523904.2:ENST00000689919.1:ENST00000685824.1:ENST00000685993.1:ENST00000692829.1:ENST00000692916.1:ENST00000686879.1:ENST00000685235.1:ENST00000690144.1:ENST00000689164.1:ENST00000691847.1:ENST00000688215.1:ENST00000690031.1:ENST00000689867.1:ENST00000689873.1:ENST00000521007.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	31	2	1.94024	3.1265050000000003	4.31277	0.0116325	0.00346264	0.0889284	0.0539802
chr1	39856488	39856584	427999	0	-	0.260417	[0,0.28]	chr1	52013	21	INTRON	INTRON	TRIT1	ENSG00000043514.17	ENST00000316891.10:ENST00000648678.1:ENST00000537440.5:ENST00000372818.5:ENST00000462797.5:ENST00000441669.6:ENST00000495175.6:ENST00000491865.5:ENST00000541099.5:ENST00000492612.6:ENST00000489945.5:ENST00000486825.6:ENST00000469476.2:ENST00000462243.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	229	2	2.5272	3.126285	3.72537	5.29242e-4	1.11215e-4	0.0207276	0.00945289
chr11	62640469	62640569	4960312	0	-	0.52	(0.515,0.57]	chr11	466617	4	SS3_PROX	SS3_PROX:INTRON	GANAB	ENSG00000089597.18	ENST00000346178.8:ENST00000532402.5:ENST00000356638.8:ENST00000540933.5:ENST00000648273.1:ENST00000534779.5:ENST00000534613.5:ENST00000525994.1:ENST00000526210.1:ENST00000526392.1:ENST00000529737.5:ENST00000534419.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	37	2	1.56681	3.126245	4.68568	0.064862	0.00270027	0.179394	0.0479115
chr7	73687595	73687692	3331609	0	+	0.515464	(0.515,0.57]	chr7	309885	1	INTRON	INTRON	BUD23	ENSG00000071462.12	ENST00000432522.5:ENST00000421744.5:ENST00000265758.7:ENST00000496153.5:ENST00000478670.5:ENST00000441822.5:ENST00000436944.5:ENST00000428163.5:ENST00000463307.5:ENST00000423497.5:ENST00000430270.5:ENST00000487006.2:ENST00000430446.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	37	2	1.56681	3.126245	4.68568	0.064862	0.00270027	0.179394	0.0479115
chr5	159200660	159200759	2759099	0	-	0.272727	[0,0.28]	chr5	260362	55	INTRON	INTRON	RNF145	ENSG00000145860.12	ENST00000424310.7:ENST00000519865.5:ENST00000274542.6:ENST00000611185.4:ENST00000521606.6:ENST00000518802.5:ENST00000520638.1:ENST00000520548.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	57	2	1.49274	3.1261900000000002	4.75964	0.0592697	0.0232081	0.189982	0.118148
chr8	31071406	31071505	3728315	0	+	0.333333	(0.32,0.35]	chr8	346558	27	INTRON	INTRON	WRN	ENSG00000165392.11	ENST00000650667.1:ENST00000298139.7:ENST00000651642.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	35	2	1.88468	3.1261149999999995	4.36755	0.0515071	0.0300552	0.176696	0.129138
chr12	96924432	96924532	5198305	0	+	0.3	(0.28,0.32]	chr12	491723	2	SS3_PROX	SS3_PROX:INTRON	NEDD1	ENSG00000139350.12	ENST00000429527.6:ENST00000557478.5:ENST00000555806.5:ENST00000411739.6:ENST00000555114.5:ENST00000266742.9:ENST00000557454.1:ENST00000553609.5:ENST00000557400.5:ENST00000557644.5:ENST00000457368.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	45	2	1.6633	3.1260250000000003	4.58875	0.0522231	0.0230574	0.177274	0.118056
chr3	28291954	28292054	1391052	0	+	0.31	(0.28,0.32]	chr3	145645	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	CMC1	ENSG00000187118.14	ENST00000477739.1:ENST00000423894.5:ENST00000466830.6:ENST00000334841.10:ENST00000418849.2:ENST00000396610.6:ENST00000468330.1:ENST00000495428.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	45	2	1.6633	3.1260250000000003	4.58875	0.0522231	0.0230574	0.177274	0.118056
chr5	138172619	138172719	2731373	0	-	0.41	(0.408,0.44]	chr5	257181	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	BRD8	ENSG00000112983.18	ENST00000254900.10:ENST00000402931.5:ENST00000230901.9:ENST00000454473.5:ENST00000418329.5:ENST00000441656.5:ENST00000411594.6:ENST00000512140.5:ENST00000428808.5:ENST00000432618.5:ENST00000425764.5:ENST00000450756.5:ENST00000515254.1:ENST00000430331.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	50	2	1.49789	3.125935	4.75398	0.0390091	0.00703931	0.161009	0.0718189
chr1	12438474	12438574	30394	0	+	0.34	(0.32,0.35]	chr1	3762	213	INTRON	INTRON	VPS13D	ENSG00000048707.15	ENST00000620676.6:ENST00000613099.4:ENST00000011700.10:ENST00000646411.1:ENST00000543710.5:ENST00000645371.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	36	2	2.07985	3.1258299999999997	4.17181	0.04531	0.0303092	0.149888	0.143025
chr6	87207320	87207420	2913776	0	+	0.35	(0.32,0.35]	chr6	275281	371	INTRON	INTRON	ZNF292	ENSG00000188994.13	ENST00000369577.8:ENST00000369578.6:ENST00000518845.1:ENST00000339907.8:ENST00000496806.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	36	2	2.07985	3.1258299999999997	4.17181	0.04531	0.0303092	0.149888	0.143025
chr14	34792174	34792274	5867599	0	-	0.49	(0.476,0.515]	chr14	557344	56	INTRON	INTRON	BAZ1A	ENSG00000198604.11	ENST00000358716.8:ENST00000360310.6:ENST00000382422.6	protein_coding	protein_coding	protein_coding	protein_coding	2	34	2	1.72558	3.12579	4.526	0.0767648	0.00699701	0.196164	0.0754576
chr17	19286989	19287089	6571245	0	+	0.49	(0.476,0.515]	chr17	638985	8	INTRON	INTRON	EPN2	ENSG00000072134.16	ENST00000314728.10:ENST00000347697.6:ENST00000395618.7:ENST00000580579.5:ENST00000395628.6:ENST00000575595.5:ENST00000494192.6:ENST00000395620.6:ENST00000495155.5:ENST00000395626.5:ENST00000571254.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	34	2	1.72558	3.12579	4.526	0.0767648	0.00699701	0.196164	0.0754576
chr1	227021581	227021680	648712	0	-	0.242424	[0,0.28]	chr1	76912	42	INTRON	INTRON	CDC42BPA	ENSG00000143776.20	ENST00000366766.8:ENST00000366769.7:ENST00000334218.9:ENST00000366767.7:ENST00000448940.5:ENST00000442054.5:ENST00000366764.8:ENST00000429440.5	protein_coding	protein_coding	protein_coding	protein_coding	2	76	2	3.00498	3.125785	3.24659	0.00876063	0.00570201	0.0846118	0.0656459
chr9	137661712	137661812	4223903	0	+	0.44	(0.408,0.44]	chr9	388170	103	INTRON	INTRON	EHMT1	ENSG00000181090.21	ENST00000462484.5:ENST00000371394.6:ENST00000630754.2:ENST00000460843.6:ENST00000626216.2:ENST00000629335.2:ENST00000637335.1:ENST00000636376.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	35	2	1.81572	3.12576	4.4358	0.0626779	0.00893097	0.175915	0.0849778
chrX	154788471	154788569	7915433	0	-	0.408163	(0.378,0.408]	chrX	806147	17	INTRON	INTRON	MPP1	ENSG00000130830.15	ENST00000369534.8:ENST00000413259.7:ENST00000439370.5:ENST00000393531.5:ENST00000453245.5:ENST00000494170.1:ENST00000462825.5:ENST00000393529.5:ENST00000475943.5:ENST00000428488.1:ENST00000488754.5:ENST00000417435.5:ENST00000488694.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	12	242	2	2.85094	3.125715	3.40049	3.90498e-5	8.57242e-6	0.00533644	0.00210871
chr1	185083554	185083654	275939	0	+	0.4	(0.378,0.408]	chr1	32263	369	INTRON	INTRON	RNF2	ENSG00000121481.11	ENST00000367509.8:ENST00000498201.1:ENST00000367510.8:ENST00000453650.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	24	2	2.26252	3.1255949999999997	3.98867	0.056222	0.0507	0.18407	0.156383
chr11	70427765	70427863	4821924	0	+	0.387755	(0.378,0.408]	chr11	449656	20	INTRON	INTRON	CTTN	ENSG00000085733.16	ENST00000346329.7:ENST00000301843.13:ENST00000376561.7:ENST00000527962.5:ENST00000498223.3:ENST00000393747.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	24	2	2.26252	3.1255949999999997	3.98867	0.056222	0.0507	0.18407	0.156383
chr15	63190847	63190947	6040765	0	+	0.38	(0.378,0.408]	chr15	575230	7	INTRON	INTRON	RAB8B	ENSG00000166128.13	ENST00000558990.5:ENST00000558119.5:ENST00000559927.1:ENST00000321437.9:ENST00000559006.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	24	2	2.26252	3.1255949999999997	3.98867	0.056222	0.0507	0.18407	0.156383
chr17	36538046	36538140	6601840	0	+	0.393617	(0.378,0.408]	chr17	642536	10	CDS	CDS:EXON_MRNA	PIGW	ENSG00000277161.2	ENST00000614443.2:ENST00000620233.1	protein_coding	protein_coding	protein_coding	protein_coding	1	24	2	2.26252	3.1255949999999997	3.98867	0.056222	0.0507	0.18407	0.156383
chr19	36544897	36544994	7174612	0	-	0.402062	(0.378,0.408]	chr19	725059	12	UTR3	UTR3:EXON_MRNA:INTRON	ZNF529	ENSG00000186020.13	ENST00000452073.2:ENST00000591340.6:ENST00000590656.1:ENST00000334116.7	protein_coding	protein_coding	protein_coding	protein_coding	1	24	2	2.26252	3.1255949999999997	3.98867	0.056222	0.0507	0.18407	0.156383
chr19	58272513	58272613	7217698	0	-	0.4	(0.378,0.408]	chr19	733257	125	INTRON	INTRON	ZNF8-DT	ENSG00000268516.3	ENST00000597230.3	lncRNA	lncRNA	lncRNA	lncRNA	1	24	2	2.26252	3.1255949999999997	3.98867	0.056222	0.0507	0.18407	0.156383
chr21	34860777	34860877	7446992	0	-	0.39	(0.378,0.408]	chr21	759849	8	INTRON	INTRON	RUNX1	ENSG00000159216.19	ENST00000300305.7:ENST00000675419.1:ENST00000437180.5:ENST00000344691.8:ENST00000482318.5:ENST00000399240.5:ENST00000358356.9:ENST00000399237.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	24	2	2.26252	3.1255949999999997	3.98867	0.056222	0.0507	0.18407	0.156383
chr3	10310568	10310668	1613209	0	-	0.39	(0.378,0.408]	chr3	166596	45	INTRON	INTRON	SEC13	ENSG00000157020.18	ENST00000350697.8:ENST00000337354.8:ENST00000397109.7:ENST00000479868.6:ENST00000397117.5:ENST00000383801.6:ENST00000477547.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	24	2	2.26252	3.1255949999999997	3.98867	0.056222	0.0507	0.18407	0.156383
chr4	39921181	39921275	2131633	0	-	0.382979	(0.378,0.408]	chr4	210218	4	INTRON	INTRON	PDS5A	ENSG00000121892.15	ENST00000303538.13:ENST00000503396.5:ENST00000513798.1	protein_coding	protein_coding	protein_coding	protein_coding	1	24	2	2.26252	3.1255949999999997	3.98867	0.056222	0.0507	0.18407	0.156383
chr4	67715625	67715724	1965231	0	+	0.40404	(0.378,0.408]	chr4	197299	138	INTRON	INTRON	UBA6-DT	ENSG00000248049.8	ENST00000660649.1:ENST00000654961.1:ENST00000656992.1:ENST00000500538.7:ENST00000498917.2:ENST00000665294.1:ENST00000693410.1:ENST00000667140.1:ENST00000666396.1:ENST00000506606.1:ENST00000664183.1:ENST00000663060.1:ENST00000660972.1:ENST00000665498.1:ENST00000514109.1	lncRNA	lncRNA	lncRNA	lncRNA	1	24	2	2.26252	3.1255949999999997	3.98867	0.056222	0.0507	0.18407	0.156383
chr5	32429673	32429773	2599178	0	-	0.39	(0.378,0.408]	chr5	246966	92	INTRON	INTRON	ZFR	ENSG00000056097.16	ENST00000265069.13:ENST00000505366.1:ENST00000505204.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	24	2	2.26252	3.1255949999999997	3.98867	0.056222	0.0507	0.18407	0.156383
chr5	90684020	90684107	2421677	0	+	0.390805	(0.378,0.408]	chr5	232924	6	CDS	CDS:EXON_MRNA:INTRON	ADGRV1	ENSG00000164199.18	ENST00000405460.9:ENST00000640403.1:ENST00000639473.1:ENST00000639431.1:ENST00000640779.1:ENST00000640012.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	24	2	2.26252	3.1255949999999997	3.98867	0.056222	0.0507	0.18407	0.156383
chr5	139169259	139169359	2735169	0	-	0.39	(0.378,0.408]	chr5	257600	139	INTRON	INTRON	SIL1	ENSG00000120725.13	ENST00000394817.7:ENST00000265195.9:ENST00000509534.5:ENST00000508639.5:ENST00000507002.5:ENST00000505830.5:ENST00000504666.5:ENST00000509400.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	24	2	2.26252	3.1255949999999997	3.98867	0.056222	0.0507	0.18407	0.156383
chr6	3088888	3088986	2788325	0	+	0.387755	(0.378,0.408]	chr6	263332	14	EXON_MRNA	EXON_MRNA:INTRON	RIPK1	ENSG00000137275.16	ENST00000678809.1:ENST00000678874.1:ENST00000380409.3:ENST00000677799.1:ENST00000677261.1:ENST00000676758.1:ENST00000676995.1:ENST00000679118.1:ENST00000479389.1:ENST00000676591.1:ENST00000259808.9:ENST00000676618.1:ENST00000678084.1:ENST00000677361.1:ENST00000676965.1:ENST00000680389.1:ENST00000679775.1:ENST00000679335.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	24	2	2.26252	3.1255949999999997	3.98867	0.056222	0.0507	0.18407	0.156383
chr6	21092210	21092310	2833971	0	+	0.4	(0.378,0.408]	chr6	265697	266	INTRON	INTRON	CDKAL1	ENSG00000145996.11	ENST00000274695.8:ENST00000378610.1	protein_coding	protein_coding	protein_coding	protein_coding	1	24	2	2.26252	3.1255949999999997	3.98867	0.056222	0.0507	0.18407	0.156383
chr6	35905174	35905274	3088667	0	-	0.39	(0.378,0.408]	chr6	288897	2	SS3_PROX	SS3_PROX:INTRON	SRPK1	ENSG00000096063.16	ENST00000373825.7:ENST00000423325.6:ENST00000346162.10:ENST00000361690.7:ENST00000510290.5:ENST00000508473.5:ENST00000512445.5:ENST00000513367.1:ENST00000507909.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	24	2	2.26252	3.1255949999999997	3.98867	0.056222	0.0507	0.18407	0.156383
chr6	136788711	136788811	3235604	0	-	0.39	(0.378,0.408]	chr6	300700	678	INTRON	INTRON	MAP3K5	ENSG00000197442.10	ENST00000359015.5	protein_coding	protein_coding	protein_coding	protein_coding	1	24	2	2.26252	3.1255949999999997	3.98867	0.056222	0.0507	0.18407	0.156383
chr9	128996110	128996206	4208372	0	+	0.40625	(0.378,0.408]	chr9	385393	2	INTRON	INTRON	NUP188	ENSG00000095319.14	ENST00000372577.2:ENST00000477069.5:ENST00000495726.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	24	2	2.26252	3.1255949999999997	3.98867	0.056222	0.0507	0.18407	0.156383
chr17	22168547	22168647	6579349	0	+	0.54	(0.515,0.57]	chr17	639556	773	INTRON	INTRON	UBBP4	ENSG00000263563.7	ENST00000648259.1:ENST00000688301.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	10	153	2	2.3247	3.12547	3.92624	2.84892e-4	4.87233e-6	0.0150568	0.00163168
chr2	10798552	10798650	1066581	0	-	0.346939	(0.32,0.35]	chr2	113873	4	INTRON	INTRON	PDIA6	ENSG00000143870.13	ENST00000272227.8:ENST00000381611.8:ENST00000404371.6:ENST00000617249.4:ENST00000540494.5:ENST00000404824.2:ENST00000489662.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	68	2	1.41804	3.1254549999999997	4.83287	0.0337299	0.0095071	0.146709	0.0817766
chr12	50455559	50455658	5136897	0	+	0.383838	(0.378,0.408]	chr12	484429	7	INTRON	INTRON	LARP4	ENSG00000161813.23	ENST00000293618.12:ENST00000429001.7:ENST00000398473.7:ENST00000522085.5:ENST00000518444.5:ENST00000518561.5:ENST00000347328.9:ENST00000520064.2	protein_coding	protein_coding	protein_coding	protein_coding	7	161	2	3.0905300000000002	3.125325	3.16012	1.44288e-4	3.85412e-5	0.0109794	0.00500557
chr19	40044486	40044586	7182809	0	-	0.35	(0.32,0.35]	chr19	726353	75	INTRON	INTRON	ZNF780B	ENSG00000128000.17	ENST00000434248.6:ENST00000221355.10:ENST00000598845.5	protein_coding	protein_coding	protein_coding	protein_coding	3	82	2	2.46027	3.1253	3.79033	0.0108973	2.87593e-4	0.0873034	0.0150609
chr2	15504044	15504144	1072588	0	-	0.36	(0.35,0.378]	chr2	114431	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	NBAS	ENSG00000151779.13	ENST00000281513.10:ENST00000427792.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	123	2	2.77125	3.12529	3.47933	0.0015613	1.27682e-4	0.0360352	0.00970881
chr17	46944596	46944695	6620933	0	+	0.454545	(0.44,0.476]	chr17	645734	27	INTRON	INTRON	GOSR2	ENSG00000108433.17	ENST00000640792.1:ENST00000640358.1:ENST00000573224.2:ENST00000639985.1:ENST00000639199.1:ENST00000639365.1:ENST00000638579.1:ENST00000638189.1:ENST00000639066.1:ENST00000638219.1:ENST00000639388.1:ENST00000572403.5:ENST00000640723.1:ENST00000638468.1:ENST00000639713.1:ENST00000640866.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	84	2	2.70421	3.1252649999999997	3.54632	9.9951e-4	9.23275e-4	0.0288906	0.0278392
chr22	45337433	45337533	7530430	0	+	0.34	(0.32,0.35]	chr22	769996	2	SS3_PROX	SS3_PROX:INTRON	FAM118A	ENSG00000100376.12	ENST00000216214.7:ENST00000441876.7:ENST00000483102.5:ENST00000462361.1:ENST00000479180.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	82	2	2.67068	3.125235	3.57979	0.00406276	0.00118589	0.0578984	0.0315652
chr3	48934002	48934102	1421606	0	+	0.33	(0.32,0.35]	chr3	149480	58	INTRON	INTRON	ARIH2	ENSG00000177479.20	ENST00000478224.5:ENST00000430423.5:ENST00000452882.5:ENST00000498314.5:ENST00000474618.5:ENST00000449376.5:ENST00000490095.5:ENST00000356401.9:ENST00000495761.5:ENST00000483333.5:ENST00000482427.5:ENST00000488963.5:ENST00000420814.5:ENST00000486316.5:ENST00000474936.6:ENST00000484999.5:ENST00000470296.5:ENST00000463204.5:ENST00000452385.5:ENST00000495507.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	82	2	2.67068	3.125235	3.57979	0.00406276	0.00118589	0.0578984	0.0315652
chr19	21461952	21462051	7158824	0	-	0.383838	(0.378,0.408]	chr19	723695	50	INTRON	INTRON	ENSG00000268119	ENSG00000268119.7	ENST00000596705.5:ENST00000597444.6:ENST00000594557.1:ENST00000599993.7:ENST00000600469.7:ENST00000656526.1:ENST00000663704.1:ENST00000593653.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	4	46	2	1.66594	3.125105	4.58427	0.0320222	0.0128325	0.144995	0.0926667
chr10	96560808	96560904	4674166	0	-	0.3125	(0.28,0.32]	chr10	430709	7	INTRON	INTRON	TM9SF3	ENSG00000077147.16	ENST00000371142.9:ENST00000649367.1:ENST00000443638.1:ENST00000464654.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	89	2	3.0891	3.125055	3.16101	0.0061861	7.51507e-4	0.0677395	0.0251578
chr13	95703827	95703927	5517462	0	+	0.34	(0.32,0.35]	chr13	527643	261	INTRON	INTRON	DNAJC3	ENSG00000102580.15	ENST00000602402.6:ENST00000376795.6	protein_coding	protein_coding	protein_coding	protein_coding	3	44	2	1.88255	3.12505	4.36755	0.0300552	0.0269187	0.135288	0.129138
chr3	6603242	6603342	1357276	0	+	0.37	(0.35,0.378]	chr3	142522	188	INTRON	INTRON	ENSG00000189229	ENSG00000189229.12	ENST00000433639.1:ENST00000655754.1:ENST00000658468.1:ENST00000669512.1:ENST00000667028.1:ENST00000655541.1:ENST00000668643.1:ENST00000671568.1:ENST00000671036.1:ENST00000669798.1:ENST00000655753.1:ENST00000655856.1:ENST00000658398.1:ENST00000661518.1:ENST00000661279.1:ENST00000655495.1:ENST00000663041.1:ENST00000659827.1:ENST00000667716.1:ENST00000668416.1:ENST00000658133.1:ENST00000342990.4:ENST00000660054.1:ENST00000671370.1	lncRNA	lncRNA	lncRNA	lncRNA	3	76	2	2.87835	3.12505	3.37175	0.00236696	0.00160563	0.043778	0.0367961
chr12	50157990	50158089	5323082	0	-	0.383838	(0.378,0.408]	chr12	507529	33	INTRON	INTRON	CERS5	ENSG00000139624.14	ENST00000317551.12:ENST00000422340.6:ENST00000551697.5:ENST00000380189.8:ENST00000547787.5:ENST00000438450.6:ENST00000542320.5:ENST00000547800.2:ENST00000549389.5:ENST00000550258.5:ENST00000547455.5:ENST00000546514.1:ENST00000549942.1:ENST00000550899.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	100	2	2.63057	3.12493	3.61929	0.0053733	3.16433e-5	0.0642754	0.00449886
chr6	47575044	47575142	2874544	0	+	0.357143	(0.35,0.378]	chr6	272757	4	INTRON	INTRON	CD2AP	ENSG00000198087.7	ENST00000359314.5	protein_coding	protein_coding	protein_coding	protein_coding	4	96	2	3.07741	3.124925	3.17244	0.00487788	1.44425e-4	0.0607461	0.010445
chr3	138679869	138679969	1829926	0	-	0.29	(0.28,0.32]	chr3	183941	143	INTRON	INTRON	PIK3CB	ENSG00000051382.9	ENST00000674063.1:ENST00000289153.6:ENST00000477593.5:ENST00000469284.6:ENST00000544716.5:ENST00000462898.5:ENST00000481749.5:ENST00000493568.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	50	2	2.1076	3.1248700000000005	4.14214	0.0579756	0.0133585	0.167723	0.100772
chr1	32793716	32793814	415923	0	-	0.367347	(0.35,0.378]	chr1	50188	21	INTRON	INTRON	YARS1	ENSG00000134684.13	ENST00000373477.9:ENST00000676297.1:ENST00000674654.1:ENST00000674629.1:ENST00000675785.2:ENST00000481895.6:ENST00000616261.2:ENST00000466052.1:ENST00000470377.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	41	2	1.76773	3.124785	4.48184	0.0373863	0.0191702	0.155878	0.108861
chr10	74111508	74111608	4455660	0	+	0.35	(0.32,0.35]	chr10	411498	2	SS3_PROX	SS3_PROX:INTRON	VCL	ENSG00000035403.18	ENST00000623461.3:ENST00000372755.7:ENST00000624354.3:ENST00000211998.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	45	2	1.97654	3.12477	4.273	0.0368357	0.0199113	0.138959	0.120668
chr1	95138174	95138274	166774	0	+	0.42	(0.408,0.44]	chr1	18100	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	TLCD4:TLCD4-RWDD3:ENSG00000231992	ENSG00000152078.10:ENSG00000271092.5:ENSG00000231992.1	ENST00000370203.9:ENST00000456991.5:ENST00000604534.5:ENST00000455656.1:ENST00000434207.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	4	44	2	1.49523	3.1246050000000003	4.75398	0.0534846	0.00703931	0.180041	0.0718189
chr7	158649439	158649538	3688210	0	-	0.363636	(0.35,0.378]	chr7	342131	25	INTRON	INTRON	NCAPG2	ENSG00000146918.20	ENST00000356309.8:ENST00000432615.5:ENST00000409423.5:ENST00000441982.5:ENST00000467785.5:ENST00000409339.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	76	2	2.84057	3.12454	3.40851	0.00205747	0.00189462	0.0409869	0.0402736
chr21	39305960	39306059	7465466	0	-	0.444444	(0.44,0.476]	chr21	760568	70	INTRON	INTRON	BRWD1	ENSG00000185658.14	ENST00000333229.6:ENST00000342449.8:ENST00000380800.7:ENST00000341322.4:ENST00000470108.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	123	2	2.63178	3.12448	3.61718	7.37432e-4	1.35702e-4	0.02495	0.0100405
chr1	15490831	15490926	380406	0	-	0.378947	(0.378,0.408]	chr1	44603	1	UTR3	UTR3:EXON_MRNA	CASP9	ENSG00000132906.18	ENST00000546424.5	protein_coding	protein_coding	protein_coding	protein_coding	2	36	2	1.8252	3.124345	4.42349	0.0619563	0.00992961	0.174514	0.0877296
chr8	96646201	96646301	3804002	0	+	0.38	(0.378,0.408]	chr8	352745	4	INTRON	INTRON	CPQ	ENSG00000104324.16	ENST00000220763.10:ENST00000519900.1:ENST00000517742.1	protein_coding	protein_coding	protein_coding	protein_coding	2	36	2	1.8252	3.124345	4.42349	0.0619563	0.00992961	0.174514	0.0877296
chr5	138428486	138428586	2495638	0	+	0.52	(0.515,0.57]	chr5	238589	4	SS5_PROX	SS5_PROX:INTRON	KDM3B	ENSG00000120733.14	ENST00000314358.10:ENST00000510866.5:ENST00000542866.2:ENST00000507996.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	81	2	2.84387	3.124295	3.40472	0.0018149	8.47527e-5	0.0384415	0.0077763
chr6	69762360	69762460	3136253	0	-	0.48	(0.476,0.515]	chr6	292289	64	INTRON	INTRON	LMBRD1	ENSG00000168216.13	ENST00000649934.3:ENST00000647655.1:ENST00000648265.1:ENST00000649679.1:ENST00000649673.1:ENST00000649057.1:ENST00000370570.6:ENST00000648168.1:ENST00000649370.1:ENST00000647934.1:ENST00000649918.1:ENST00000649744.1:ENST00000650124.1:ENST00000648210.1:ENST00000648303.1:ENST00000649011.1:ENST00000472827.2:ENST00000648635.1:ENST00000647650.1:ENST00000649028.1:ENST00000649958.1:ENST00000649166.1:ENST00000650107.1:ENST00000647964.1:ENST00000648394.1:ENST00000648743.1:ENST00000650035.1:ENST00000649054.1:ENST00000650043.1:ENST00000649795.1:ENST00000649970.1:ENST00000647669.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	44	2	1.48023	3.12425	4.76827	0.0559072	0.00600704	0.18407	0.0674604
chr12	123188795	123188895	5443607	0	-	0.37	(0.35,0.378]	chr12	520806	72	INTRON	INTRON	MPHOSPH9	ENSG00000051825.15	ENST00000606320.6:ENST00000541076.6:ENST00000545556.6:ENST00000302373.8:ENST00000539024.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	57	2	2.83709	3.12424	3.41139	0.01435	0.00143263	0.0966737	0.0347139
chr3	9808138	9808238	1361083	0	+	0.52	(0.515,0.57]	chr3	143130	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ARPC4-TTLL3:TTLL3	ENSG00000250151.9:ENSG00000214021.17	ENST00000424442.5:ENST00000418163.5:ENST00000397256.5:ENST00000453882.1:ENST00000414814.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	93	2	2.10989	3.12412	4.13835	0.00378898	2.53131e-5	0.0542459	0.00394111
chr4	70941422	70941522	1970896	0	+	0.55	(0.515,0.57]	chr4	197571	385	INTRON	INTRON	MOB1B	ENSG00000173542.9	ENST00000502869.5:ENST00000509041.5:ENST00000309395.7:ENST00000396051.2:ENST00000511449.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	12	201	2	2.89743	3.124095	3.35076	2.71948e-5	3.57635e-6	0.00430583	0.00123156
chr1	19091828	19091926	385512	0	-	0.357143	(0.35,0.378]	chr1	45644	25	INTRON	INTRON	UBR4	ENSG00000127481.15	ENST00000375254.8:ENST00000375224.1	protein_coding	protein_coding	protein_coding	protein_coding	2	57	2	3.08431	3.12401	3.16371	0.0065853	0.00383956	0.0701901	0.0562562
chr16	18147853	18147952	6454112	0	-	0.393939	(0.378,0.408]	chr16	621960	1441	INTRON	INTRON	ENSG00000259929:ENSG00000260242	ENSG00000259929.5:ENSG00000260242.1	ENST00000567304.1:ENST00000563866.1	lncRNA	lncRNA	lncRNA	lncRNA	2	55	2	3.05393	3.123805	3.19368	0.00551532	0.00426861	0.0672816	0.0573912
chr3	50012711	50012811	1423687	0	+	0.4	(0.378,0.408]	chr3	149994	128	INTRON	INTRON	RBM6	ENSG00000004534.15	ENST00000442092.5:ENST00000443081.5:ENST00000419610.5:ENST00000441115.5:ENST00000422955.5:ENST00000454079.5:ENST00000266022.9:ENST00000425608.5:ENST00000434592.5:ENST00000464013.5:ENST00000483350.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	73	2	3.05389	3.123785	3.19368	0.00426861	6.75567e-4	0.0573912	0.0236067
chr14	21473972	21474070	5836462	0	-	0.44898	(0.44,0.476]	chr14	554804	49	INTRON	INTRON	RAB2B	ENSG00000129472.15	ENST00000397762.6:ENST00000649801.1:ENST00000417141.5:ENST00000461909.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	96	2	2.53021	3.12378	3.71735	8.87528e-4	4.72844e-4	0.0271952	0.0201458
chr3	9411018	9411118	1359018	0	+	0.47	(0.44,0.476]	chr3	142655	127	INTRON	INTRON	SETD5	ENSG00000168137.20	ENST00000402198.7:ENST00000431285.5:ENST00000683012.1:ENST00000463180.5:ENST00000478475.5:ENST00000415650.5:ENST00000682536.1:ENST00000663774.1:ENST00000665872.1:ENST00000666307.1:ENST00000693430.1:ENST00000691925.1:ENST00000684606.1:ENST00000691175.1:ENST00000688835.1:ENST00000683262.1:ENST00000443339.5:ENST00000406341.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	96	2	2.29258	3.12366	3.95474	0.00279559	1.54083e-4	0.0488779	0.0113252
chr3	123952394	123952494	1804082	0	-	0.3	(0.28,0.32]	chr3	181265	4	SS5_PROX	SS5_PROX:INTRON	CCDC14	ENSG00000175455.16	ENST00000463996.1:ENST00000409697.8:ENST00000488653.6:ENST00000485727.5:ENST00000495381.5:ENST00000409657.5:ENST00000489746.5:ENST00000433542.7:ENST00000310351.8:ENST00000483247.1:ENST00000435910.5:ENST00000477268.5:ENST00000438440.2:ENST00000417438.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	88	2	2.91124	3.1235999999999997	3.33596	0.00342993	0.00165124	0.0517761	0.0375241
chr21	14508712	14508812	7427823	0	-	0.38	(0.378,0.408]	chr21	757738	76	INTRON	INTRON	SAMSN1	ENSG00000155307.19	ENST00000647101.1:ENST00000644288.1:ENST00000400564.5:ENST00000400566.6:ENST00000285670.7:ENST00000619120.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	89	2	2.31181	3.12352	3.93523	0.00548372	1.93873e-4	0.0671431	0.0127226
chr16	9104263	9104362	6285498	0	+	0.585859	(0.57,1]	chr16	601929	11	UTR3	UTR3:EXON_MRNA:INTRON	C16orf72	ENSG00000182831.12	ENST00000327827.12:ENST00000574285.2	protein_coding	protein_coding	protein_coding	protein_coding	13	146	2	3.0293	3.123495	3.21769	3.49002e-6	3.31474e-7	0.00120947	3.12285e-4
chr16	23967118	23967218	6325073	0	+	0.58	(0.57,1]	chr16	605705	29	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000498739.1:ENST00000647422.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	29	2	1.46969	3.123495	4.7773	0.0586892	5.07088e-4	0.167915	0.0202328
chrX	154017420	154017505	7912287	0	-	0.576471	(0.57,1]	chrX	805559	4	SS3_PROX	SS3_PROX:INTRON	IRAK1	ENSG00000184216.14	ENST00000369974.6:ENST00000369980.8:ENST00000444230.5:ENST00000477274.1:ENST00000369973.7:ENST00000393687.6:ENST00000429936.6:ENST00000443220.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	29	2	1.46969	3.123495	4.7773	0.0586892	5.07088e-4	0.167915	0.0202328
chr9	37173623	37173723	4118191	0	+	0.27	[0,0.28]	chr9	375384	135	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000322831.6:ENST00000461038.5:ENST00000488607.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	75	2	3.09587	3.1234450000000002	3.15102	0.00767596	0.00651565	0.0753665	0.0735232
chr12	31099082	31099180	5106503	0	+	0.489796	(0.476,0.515]	chr12	482269	7	INTRON	INTRON	DDX11	ENSG00000013573.17	ENST00000542838.6:ENST00000228264.10:ENST00000435753.6:ENST00000539049.5:ENST00000536265.5:ENST00000545668.5:ENST00000350437.8:ENST00000538345.1:ENST00000539673.5:ENST00000539699.5:ENST00000542661.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	73	2	3.00035	3.1233250000000004	3.2463	0.00262374	0.00109036	0.0470772	0.0303873
chr12	131934832	131934928	5250061	0	+	0.46875	(0.44,0.476]	chr12	499260	3	EXON_LNCRNA	EXON_LNCRNA:INTRON	PUS1:ENSG00000273568	ENSG00000177192.14:ENSG00000273568.1	ENST00000443358.6:ENST00000322060.9:ENST00000376649.8:ENST00000542167.2:ENST00000538037.5:ENST00000535067.5:ENST00000537484.1:ENST00000621809.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	2	57	2	2.66433	3.12326	3.58219	0.0194358	8.57842e-4	0.119831	0.0267428
chr14	30939315	30939415	5856998	0	-	0.35	(0.32,0.35]	chr14	556481	23	INTRON	INTRON	STRN3	ENSG00000196792.12	ENST00000355683.9:ENST00000357479.10:ENST00000555358.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	50	2	2.3011	3.123195	3.94529	0.0693433	0.00617969	0.184298	0.0713552
chr11	27456628	27456727	4937261	0	-	0.363636	(0.35,0.378]	chr11	462402	434	INTRON	INTRON	LGR4	ENSG00000205213.14	ENST00000379214.9:ENST00000389858.4:ENST00000480977.2	protein_coding	protein_coding	protein_coding	protein_coding	3	76	2	2.95105	3.123175	3.2953	0.0031465	0.00115843	0.0500431	0.0313803
chr7	16652865	16652965	3286562	0	+	0.39	(0.378,0.408]	chr7	305237	62	INTRON	INTRON	BZW2	ENSG00000136261.16	ENST00000415365.5:ENST00000630952.2:ENST00000433922.6:ENST00000437745.5:ENST00000432311.5:ENST00000436868.5:ENST00000258761.8:ENST00000405202.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	46	2	1.82258	3.1230350000000002	4.42349	0.0341279	0.00992961	0.135102	0.0877296
chr17	29285591	29285691	6747711	0	-	0.3	(0.28,0.32]	chr17	663229	2	SS5_PROX	SS5_PROX:INTRON	NUFIP2	ENSG00000108256.9	ENST00000225388.9:ENST00000579665.1	protein_coding	protein_coding	protein_coding	protein_coding	4	106	2	2.53475	3.12291	3.71107	0.00257029	8.39788e-4	0.0466761	0.0266487
chr6	20429522	20429622	2827724	0	+	0.47	(0.44,0.476]	chr6	265575	253	INTRON	INTRON	E2F3	ENSG00000112242.16	ENST00000346618.8:ENST00000535432.2	protein_coding	protein_coding	protein_coding	protein_coding	5	114	2	2.97428	3.122835	3.27139	0.00125568	4.01351e-5	0.0323608	0.00513517
chr9	131143080	131143180	4215803	0	+	0.56	(0.515,0.57]	chr9	386555	2	INTRON	INTRON	NUP214	ENSG00000126883.19	ENST00000695497.1:ENST00000695498.1:ENST00000695496.1:ENST00000695495.1:ENST00000695494.1:ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000525561.2:ENST00000651022.1:ENST00000695499.1:ENST00000530863.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	13	239	2	2.9852	3.1226849999999997	3.26017	5.11434e-6	2.37049e-6	0.00154646	0.00107133
chr5	97008597	97008696	2435561	0	+	0.434343	(0.408,0.44]	chr5	234039	17	INTRON	INTRON	LNPEP	ENSG00000113441.16	ENST00000231368.10:ENST00000395770.3	protein_coding	protein_coding	protein_coding	protein_coding	3	71	2	2.64944	3.12254	3.59564	0.00481947	5.73354e-4	0.060277	0.0217398
chr7	129050967	129051067	3636542	0	-	0.43	(0.408,0.44]	chr7	338148	89	INTRON	INTRON	TNPO3	ENSG00000064419.14	ENST00000627585.2:ENST00000265388.10:ENST00000471234.5:ENST00000482320.5:ENST00000471166.1	protein_coding	protein_coding	protein_coding	protein_coding	3	71	2	2.64944	3.12254	3.59564	0.00481947	5.73354e-4	0.060277	0.0217398
chr16	16604479	16604579	6311907	0	+	0.4	(0.378,0.408]	chr16	604098	1045	INTRON	INTRON	ENSG00000260126	ENSG00000260126.2	ENST00000567465.2	lncRNA	lncRNA	lncRNA	lncRNA	5	101	2	2.1516	3.1225300000000002	4.09346	0.0065185	4.66745e-5	0.0699952	0.00555772
chr6	33407965	33408063	2847117	0	+	0.469388	(0.44,0.476]	chr6	268696	7	INTRON	INTRON	KIFC1	ENSG00000237649.8	ENST00000428849.7	protein_coding	protein_coding	protein_coding	protein_coding	4	84	2	2.73545	3.122495	3.50954	0.00116647	7.908e-4	0.0312127	0.0258324
chr12	95055875	95055973	5391593	0	-	0.5	(0.476,0.515]	chr12	514023	36	INTRON	INTRON	NR2C1	ENSG00000120798.17	ENST00000333003.10:ENST00000552861.5:ENST00000547594.5:ENST00000622476.4:ENST00000545833.5:ENST00000393101.7:ENST00000330677.7:ENST00000548252.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	52	2	2.99852	3.1224100000000004	3.2463	0.0077575	0.00262374	0.0757402	0.0470772
chr2	15351591	15351691	1071034	0	-	0.48	(0.476,0.515]	chr2	114280	2	SS5_PROX	SS5_PROX:INTRON	NBAS	ENSG00000151779.13	ENST00000281513.10:ENST00000442506.5	protein_coding	protein_coding	protein_coding	protein_coding	2	52	2	2.99852	3.1224100000000004	3.2463	0.0077575	0.00262374	0.0757402	0.0470772
chr10	26796039	26796139	4583850	0	-	0.41	(0.408,0.44]	chr10	422397	184	INTRON	INTRON	ABI1	ENSG00000136754.18	ENST00000376138.7:ENST00000376166.5:ENST00000376160.5:ENST00000376139.6:ENST00000376142.6:ENST00000359188.8:ENST00000376170.8:ENST00000536334.5:ENST00000490841.6:ENST00000376137.8:ENST00000376140.4:ENST00000346832.10:ENST00000473481.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	39	2	1.81759	3.12236	4.42713	0.0316273	0.0173083	0.144405	0.104099
chr2	183147410	183147510	938715	0	+	0.35	(0.32,0.35]	chr2	102995	134	INTRON	INTRON	NUP35	ENSG00000163002.13	ENST00000409798.5:ENST00000374930.7:ENST00000479162.5:ENST00000295119.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	39	2	1.77704	3.1223099999999997	4.46758	0.0719969	0.0119306	0.187322	0.0962115
chr6	34310577	34310677	3083952	0	-	0.35	(0.32,0.35]	chr6	288627	145	INTRON	INTRON	NUDT3:RPS10-NUDT3	ENSG00000272325.2:ENSG00000270800.3	ENST00000607016.2:ENST00000639725.1:ENST00000639877.1:ENST00000605528.2	protein_coding	protein_coding	protein_coding	protein_coding	2	39	2	1.77704	3.1223099999999997	4.46758	0.0719969	0.0119306	0.187322	0.0962115
chr21	44137648	44137722	7416320	0	+	0.310811	(0.28,0.32]	chr21	756032	2	SS5_PROX	SS5_PROX:INTRON	GATD3	ENSG00000160221.18	ENST00000644251.1:ENST00000645487.1:ENST00000495007.5:ENST00000427803.6:ENST00000493883.5:ENST00000480786.1:ENST00000348499.9:ENST00000291577.11:ENST00000389690.7:ENST00000646873.1:ENST00000419699.1:ENST00000449622.6:ENST00000642815.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	166	2	2.64421	3.12229	3.60037	0.00116599	5.74264e-5	0.0312127	0.00619941
chr4	17632914	17633013	1927037	0	+	0.50505	(0.476,0.515]	chr4	193701	74	UTR3	UTR3:EXON_MRNA	MED28	ENSG00000118579.13	ENST00000237380.12	protein_coding	protein_coding	protein_coding	protein_coding	9	186	2	2.85866	3.1222000000000003	3.38574	3.38135e-5	3.32863e-5	0.00490059	0.0046174
chr9	128979919	128980012	4208187	0	+	0.44086	(0.44,0.476]	chr9	385314	2	INTRON	INTRON	NUP188	ENSG00000095319.14	ENST00000372577.2	protein_coding	protein_coding	protein_coding	protein_coding	2	54	2	2.60774	3.1220600000000003	3.63638	0.0255874	4.74104e-4	0.120269	0.0196816
chr17	82532087	82532186	6692728	0	+	0.454545	(0.44,0.476]	chr17	654627	114	INTRON	INTRON	FOXK2	ENSG00000141568.21	ENST00000473637.6:ENST00000335255.10:ENST00000527313.6:ENST00000570585.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	32	2	2.00609	3.1218199999999996	4.23755	0.0360127	0.0263357	0.152355	0.122221
chr19	10678212	10678312	7013461	0	+	0.45	(0.44,0.476]	chr19	696788	2	SS3_PROX	SS3_PROX:INTRON	ILF3	ENSG00000129351.17	ENST00000449870.5:ENST00000587928.5:ENST00000407004.7:ENST00000589998.5:ENST00000590009.5:ENST00000587505.5:ENST00000589052.5:ENST00000250241.12:ENST00000590261.5:ENST00000588657.5:ENST00000592763.5:ENST00000587840.5:ENST00000589416.5:ENST00000585835.1:ENST00000589485.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	32	2	2.00609	3.1218199999999996	4.23755	0.0360127	0.0263357	0.152355	0.122221
chr6	109452938	109453026	3186031	0	-	0.454545	(0.44,0.476]	chr6	296758	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MICAL1	ENSG00000135596.18	ENST00000358807.8:ENST00000358577.7:ENST00000456101.6:ENST00000630715.2:ENST00000431946.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	32	2	2.00609	3.1218199999999996	4.23755	0.0360127	0.0263357	0.152355	0.122221
chr8	31147876	31147976	3729105	0	+	0.45	(0.44,0.476]	chr8	346685	4	SS5_PROX	SS5_PROX:INTRON	WRN	ENSG00000165392.11	ENST00000650667.1:ENST00000298139.7:ENST00000521620.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	32	2	2.00609	3.1218199999999996	4.23755	0.0360127	0.0263357	0.152355	0.122221
chr1	162596144	162596244	238675	0	+	0.39	(0.378,0.408]	chr1	28751	25	INTRON	INTRON	UAP1	ENSG00000117143.14	ENST00000367925.6:ENST00000367926.9	protein_coding	protein_coding	protein_coding	protein_coding	4	87	2	2.53602	3.121655	3.70729	0.0020933	5.5156e-4	0.0424943	0.0216014
chr5	32125313	32125413	2597022	0	-	0.44	(0.408,0.44]	chr5	246727	7	UTR3	UTR3:EXON_MRNA	GOLPH3	ENSG00000113384.14	ENST00000265070.7	protein_coding	protein_coding	protein_coding	protein_coding	4	97	2	2.94481	3.121595	3.29838	0.00110214	2.85924e-4	0.03038	0.0155266
chr5	54129997	54130097	2619109	0	-	0.53	(0.515,0.57]	chr5	248848	162	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2:ENST00000505630.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	46	2	2.76354	3.121565	3.47959	0.0147344	8.38022e-4	0.0983813	0.0263691
chr15	63827124	63827224	6200837	0	-	0.5	(0.476,0.515]	chr15	591445	462	INTRON	INTRON	HERC1	ENSG00000103657.14	ENST00000443617.7:ENST00000561400.1:ENST00000559886.1:ENST00000558532.1:ENST00000560462.1:ENST00000560316.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	95	2	2.96824	3.121525	3.27481	9.98194e-4	2.99781e-4	0.0290732	0.0160591
chr22	21841231	21841331	7561122	0	-	0.37	(0.35,0.378]	chr22	773388	330	INTRON	INTRON	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	7	156	2	2.62446	3.12149	3.61852	2.95089e-4	6.99596e-5	0.0153633	0.00747334
chr2	196782559	196782659	1306337	0	-	0.33	(0.32,0.35]	chr2	136573	15	INTRON	INTRON	GTF3C3	ENSG00000119041.11	ENST00000263956.8:ENST00000651042.1:ENST00000448087.5:ENST00000409364.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	61	2	2.74415	3.1214199999999996	3.49869	0.0198267	0.00108004	0.109608	0.0300133
chr5	32426583	32426683	2599147	0	-	0.5	(0.476,0.515]	chr5	246966	61	INTRON	INTRON	ZFR	ENSG00000056097.16	ENST00000265069.13:ENST00000505366.1:ENST00000505204.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	52	2	3.05152	3.1213550000000003	3.19119	0.0064848	0.00325748	0.0699952	0.0524329
chr1	149924414	149924514	549618	0	-	0.4	(0.378,0.408]	chr1	64544	4	SS3_PROX	SS3_PROX:INTRON	SF3B4	ENSG00000143368.10	ENST00000271628.9	protein_coding	protein_coding	protein_coding	protein_coding	6	116	2	1.82004	3.1213249999999997	4.42261	0.012605	1.57105e-5	0.0980801	0.00318411
chr12	120181796	120181894	5433126	0	-	0.387755	(0.378,0.408]	chr12	519319	25	INTRON	INTRON	GCN1	ENSG00000089154.11	ENST00000300648.7	protein_coding	protein_coding	protein_coding	protein_coding	3	39	2	1.65821	3.1212400000000002	4.58427	0.0506302	0.0128325	0.17547	0.0926667
chr1	246169656	246169756	677329	0	-	0.51	(0.476,0.515]	chr1	79721	734	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000391836.3:ENST00000453676.5:ENST00000462422.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	73	2	2.37731	3.121165	3.86502	0.0111793	2.2858e-4	0.0937192	0.0138641
chr21	8448548	8448648	7367043	0	+	0.43	(0.408,0.44]	chr21	751838	381	INTRON	INTRON	ENSG00000280441	ENSG00000280441.3	ENST00000651813.1:ENST00000652379.1	lncRNA	lncRNA	lncRNA	lncRNA	4	50	2	1.53812	3.1211100000000003	4.7041	0.0501609	0.00381677	0.156383	0.0562562
chr9	148511	148604	4226981	0	-	0.290323	(0.28,0.32]	chr9	388556	6	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	CBWD1	ENSG00000172785.19	ENST00000356521.9:ENST00000377400.8:ENST00000619157.4:ENST00000314367.14:ENST00000612045.4:ENST00000475411.5:ENST00000611457.4:ENST00000465014.6:ENST00000613508.4:ENST00000382447.8:ENST00000487575.6:ENST00000495302.5:ENST00000616944.4:ENST00000613355.4:ENST00000498044.6:ENST00000618361.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	67	2	2.97333	3.120915	3.2685	0.00857834	0.00432734	0.083729	0.0579331
chr9	89311651	89311751	4152964	0	+	0.58	(0.57,1]	chr9	378773	3	SS5_PROX	SS5_PROX:PRIMIRNA:INTRON	CKS2:MIR3153	ENSG00000123975.5:ENSG00000265112.1	ENST00000314355.7:ENST00000580744.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:primary_miRNA	6	74	2	2.7621000000000002	3.1209100000000003	3.47972	5.29607e-4	4.55922e-6	0.0207276	0.00157263
chr1	23077643	23077737	44361	0	+	0.425532	(0.408,0.44]	chr1	5326	4	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	KDM1A	ENSG00000004487.18	ENST00000692214.1:ENST00000686934.1:ENST00000689853.1:ENST00000465864.2:ENST00000691256.1:ENST00000688122.1:ENST00000692056.1:ENST00000692853.1:ENST00000689366.1:ENST00000686270.1:ENST00000685102.1:ENST00000690627.1:ENST00000686771.1:ENST00000692209.1:ENST00000686339.1:ENST00000691813.1:ENST00000693156.1:ENST00000688235.1:ENST00000692975.1:ENST00000687202.1:ENST00000691682.1:ENST00000691404.1:ENST00000356634.7:ENST00000400181.9:ENST00000689677.1:ENST00000686793.1:ENST00000689971.1:ENST00000688943.1:ENST00000690391.1:ENST00000494920.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	53	2	3.08738	3.1207599999999998	3.15414	0.00478231	0.00469847	0.0636201	0.0600108
chr15	101286380	101286468	6269950	0	-	0.409091	(0.408,0.44]	chr15	598002	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SNRPA1	ENSG00000131876.18	ENST00000254193.11:ENST00000558036.5:ENST00000559309.5:ENST00000560433.5:ENST00000394082.8:ENST00000540017.6:ENST00000560496.5:ENST00000559686.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	97	2	2.6118	3.1207599999999998	3.62972	7.19047e-4	5.80745e-4	0.0246202	0.0218949
chr6	28158569	28158668	2839497	0	+	0.40404	(0.378,0.408]	chr6	266538	47	UTR3	UTR3:EXON_MRNA	ZKSCAN8	ENSG00000198315.11	ENST00000330236.7	protein_coding	protein_coding	protein_coding	protein_coding	3	73	2	2.51733	3.12065	3.72397	0.00808319	3.23378e-4	0.0766625	0.0159645
chr4	467783	467882	2092857	0	-	0.585859	(0.57,1]	chr4	206783	230	INTRON	INTRON	ABCA11P:ZNF721	ENSG00000251595.7:ENSG00000182903.16	ENST00000451020.6:ENST00000514396.5:ENST00000507854.1:ENST00000515578.5:ENST00000506646.5:ENST00000507078.1:ENST00000511833.3:ENST00000338977.5:ENST00000505900.1	protein_coding	protein_coding	protein_coding:transcribed_processed_pseudogene	protein_coding:nonsense_mediated_decay:processed_transcript	8	93	2	2.93514	3.120565	3.30599	5.35006e-5	3.55324e-6	0.00598316	0.00134833
chr7	158905083	158905183	3456624	0	+	0.35	(0.32,0.35]	chr7	323187	26	EXON_MRNA	EXON_MRNA:INTRON	DYNC2I1	ENSG00000126870.16	ENST00000407559.8:ENST00000444851.5:ENST00000467220.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	280	2	2.88421	3.1204099999999997	3.35661	9.49161e-5	3.84425e-6	0.00869583	0.00129565
chr15	65776962	65777062	6209643	0	-	0.5	(0.476,0.515]	chr15	592617	97	INTRON	INTRON	DENND4A	ENSG00000174485.16	ENST00000443035.8:ENST00000431932.6:ENST00000564674.5:ENST00000568515.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	70	2	3.04097	3.12036	3.19975	0.00383299	7.0601e-4	0.0542786	0.0241881
chr6	149527276	149527375	3245375	0	-	0.494949	(0.476,0.515]	chr6	301508	1	INTRON	INTRON	PPIL4	ENSG00000131013.4	ENST00000253329.3	protein_coding	protein_coding	protein_coding	protein_coding	3	70	2	3.04097	3.12036	3.19975	0.00383299	7.0601e-4	0.0542786	0.0241881
chr7	102371545	102371644	3371150	0	+	0.353535	(0.35,0.378]	chr7	315430	51	INTRON	INTRON	PRKRIP1:ENSG00000239969	ENSG00000128563.13:ENSG00000239969.6	ENST00000477886.5:ENST00000469763.5:ENST00000482549.5:ENST00000496391.5:ENST00000484974.5:ENST00000492837.1:ENST00000482465.5	protein_coding	protein_coding	protein_coding:transcribed_unprocessed_pseudogene	protein_coding:processed_transcript	2	34	2	2.04358	3.1203399999999997	4.1971	0.0367539	0.0329533	0.145171	0.138959
chr7	135636157	135636254	3429141	0	+	0.371134	(0.35,0.378]	chr7	319821	1	INTRON	INTRON	NUP205	ENSG00000155561.15	ENST00000285968.11:ENST00000607647.5:ENST00000477620.5:ENST00000461255.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	34	2	2.04358	3.1203399999999997	4.1971	0.0367539	0.0329533	0.145171	0.138959
chr6	13659132	13659232	3058698	0	-	0.36	(0.35,0.378]	chr6	284541	3	SS3_PROX	SS3_PROX:INTRON	RANBP9	ENSG00000010017.13	ENST00000011619.6	protein_coding	protein_coding	protein_coding	protein_coding	2	61	2	2.39939	3.120295	3.8412	0.0458078	1.97447e-4	0.149888	0.0122531
chr22	45340792	45340889	7530466	0	+	0.453608	(0.44,0.476]	chr22	770005	5	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	FAM118A	ENSG00000100376.12	ENST00000216214.7:ENST00000441876.7:ENST00000462361.1:ENST00000479180.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	9	192	2	2.46551	3.1202449999999997	3.77498	3.60069e-4	3.35912e-6	0.0169207	0.00130335
chr1	180714693	180714792	270423	0	+	0.30303	(0.28,0.32]	chr1	31620	319	INTRON	INTRON	XPR1	ENSG00000143324.14	ENST00000367590.9:ENST00000367589.3	protein_coding	protein_coding	protein_coding	protein_coding	2	37	2	1.90263	3.12014	4.33765	0.0503272	0.039714	0.17488	0.143072
chr13	28142185	28142285	5460865	0	+	0.32	(0.28,0.32]	chr13	523235	27	INTRON	INTRON	PAN3	ENSG00000152520.14	ENST00000503791.5:ENST00000380958.8:ENST00000399613.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	37	2	1.90263	3.12014	4.33765	0.0503272	0.039714	0.17488	0.143072
chr6	36597115	36597189	2854442	0	+	0.608108	(0.57,1]	chr6	269776	3	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	SRSF3	ENSG00000112081.17	ENST00000613941.4:ENST00000373715.11:ENST00000620242.1:ENST00000339436.11:ENST00000477442.6:ENST00000620941.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	23	240	2	2.9124	3.1201049999999997	3.32781	1.00042e-7	9.93351e-8	1.42007e-4	1.37407e-4
chr18	41966129	41966229	6897559	0	+	0.31	(0.28,0.32]	chr18	683374	31	INTRON	INTRON	PIK3C3	ENSG00000078142.14	ENST00000262039.9:ENST00000398870.7:ENST00000586545.5:ENST00000585528.5:ENST00000591011.1:ENST00000589550.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	47	2	1.90249	3.12007	4.33765	0.039714	0.0261803	0.143072	0.133676
chr16	89487937	89488037	6543576	0	-	0.6	(0.57,1]	chr16	634281	563	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	111	2	2.54036	3.12005	3.69974	4.4133e-5	7.94667e-7	0.00538971	5.43864e-4
chr4	73251581	73251681	2160755	0	-	0.42	(0.408,0.44]	chr4	212799	286	INTRON	INTRON	ANKRD17	ENSG00000132466.20	ENST00000358602.9:ENST00000558247.5:ENST00000330838.10:ENST00000561029.1	protein_coding	protein_coding	protein_coding	protein_coding	6	129	2	2.8719	3.1199250000000003	3.36795	2.02232e-4	1.3686e-4	0.0129814	0.0100759
chrX	74274141	74274241	7841420	0	-	0.44	(0.408,0.44]	chrX	799729	4	SS5_PROX	SS5_PROX:INTRON	FTX	ENSG00000230590.12	ENST00000603672.5:ENST00000430772.6:ENST00000602776.6:ENST00000638681.1:ENST00000652319.1:ENST00000661133.1:ENST00000652071.1:ENST00000602812.6:ENST00000651703.1:ENST00000653018.1:ENST00000658448.1:ENST00000662240.1:ENST00000652527.1:ENST00000651451.1:ENST00000657611.1:ENST00000660481.1:ENST00000659574.1:ENST00000661084.1:ENST00000662494.1:ENST00000670936.1:ENST00000602420.6:ENST00000658203.1:ENST00000638985.1:ENST00000691187.1:ENST00000603037.2:ENST00000687056.1:ENST00000654870.2:ENST00000652540.1:ENST00000652331.2:ENST00000652013.1:ENST00000657070.1:ENST00000665069.1:ENST00000651936.1:ENST00000652496.1:ENST00000653874.2:ENST00000661335.1:ENST00000664123.1:ENST00000658439.1:ENST00000666535.1:ENST00000652970.1:ENST00000423992.3:ENST00000665313.2:ENST00000651140.1:ENST00000660100.1:ENST00000693483.1:ENST00000656041.1:ENST00000657327.1:ENST00000664343.1:ENST00000656977.1:ENST00000671343.1:ENST00000659407.1:ENST00000671067.1:ENST00000660829.1:ENST00000671385.1	lncRNA	lncRNA	lncRNA	lncRNA	6	129	2	2.8719	3.1199250000000003	3.36795	2.02232e-4	1.3686e-4	0.0129814	0.0100759
chr1	8514415	8514515	370737	0	-	0.51	(0.476,0.515]	chr1	43487	26	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000377464.5:ENST00000400907.6:ENST00000656437.1:ENST00000464972.5:ENST00000659924.1:ENST00000480342.5:ENST00000507012.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	25	2	2.13854	3.119835	4.10113	0.0776563	0.0226984	0.196285	0.124921
chr1	50954372	50954472	452197	0	-	0.48	(0.476,0.515]	chr1	54267	960	INTRON	INTRON	FAF1	ENSG00000185104.21	ENST00000396153.7:ENST00000487898.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	25	2	2.13854	3.119835	4.10113	0.0776563	0.0226984	0.196285	0.124921
chr1	93106638	93106738	162813	0	+	0.5	(0.476,0.515]	chr1	17567	253	INTRON	INTRON	MTF2	ENSG00000143033.18	ENST00000540243.5:ENST00000545708.5:ENST00000474314.6:ENST00000370298.9:ENST00000473430.5:ENST00000494963.5:ENST00000471953.5:ENST00000370303.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	25	2	2.13854	3.119835	4.10113	0.0776563	0.0226984	0.196285	0.124921
chr14	34845782	34845881	5868148	0	-	0.494949	(0.476,0.515]	chr14	557409	167	INTRON	INTRON	BAZ1A	ENSG00000198604.11	ENST00000358716.8:ENST00000360310.6:ENST00000382422.6:ENST00000553573.1:ENST00000553853.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	25	2	2.13854	3.119835	4.10113	0.0776563	0.0226984	0.196285	0.124921
chr17	19334637	19334733	6571734	0	+	0.489583	(0.476,0.515]	chr17	639033	5	UTR3	UTR3:EXON_MRNA:INTRON	EPN2	ENSG00000072134.16	ENST00000314728.10:ENST00000347697.6:ENST00000395618.7:ENST00000395620.6:ENST00000395626.5	protein_coding	protein_coding	protein_coding	protein_coding	1	25	2	2.13854	3.119835	4.10113	0.0776563	0.0226984	0.196285	0.124921
chr2	55402703	55402800	1124225	0	-	0.494845	(0.476,0.515]	chr2	120578	31	INTRON	INTRON	CCDC88A	ENSG00000115355.18	ENST00000263630.13:ENST00000436346.7:ENST00000336838.10:ENST00000642200.1:ENST00000413716.7:ENST00000643413.1:ENST00000647401.1:ENST00000645311.1:ENST00000646796.1:ENST00000645571.1:ENST00000645477.1:ENST00000645072.1:ENST00000644890.1:ENST00000644630.1:ENST00000647098.1:ENST00000642890.1:ENST00000647517.1:ENST00000645031.1:ENST00000645529.1:ENST00000644033.1:ENST00000644193.1:ENST00000647341.1:ENST00000644127.1:ENST00000644157.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	25	2	2.13854	3.119835	4.10113	0.0776563	0.0226984	0.196285	0.124921
chr2	74207006	74207106	813314	0	+	0.48	(0.476,0.515]	chr2	90933	4	SS5_PROX	SS5_PROX:INTRON	MTHFD2	ENSG00000065911.13	ENST00000677997.1:ENST00000677170.1:ENST00000678684.1:ENST00000409804.5:ENST00000489041.2:ENST00000470592.5:ENST00000678955.1:ENST00000394053.7:ENST00000677377.1:ENST00000679055.1:ENST00000678340.1:ENST00000477455.5:ENST00000409601.1:ENST00000678228.1:ENST00000462026.2:ENST00000678623.1:ENST00000678731.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	25	2	2.13854	3.119835	4.10113	0.0776563	0.0226984	0.196285	0.124921
chr2	156103092	156103192	1247459	0	-	0.48	(0.476,0.515]	chr2	132409	781	INTRON	INTRON	LINC01876	ENSG00000226383.7	ENST00000635799.1:ENST00000662073.1:ENST00000659502.1:ENST00000428651.2:ENST00000661513.1:ENST00000657334.1:ENST00000638047.1:ENST00000637554.1:ENST00000636956.1:ENST00000637665.1:ENST00000637476.1:ENST00000637324.1	lncRNA	lncRNA	lncRNA	lncRNA	1	25	2	2.13854	3.119835	4.10113	0.0776563	0.0226984	0.196285	0.124921
chr8	144742082	144742182	4086802	0	-	0.51	(0.476,0.515]	chr8	372200	183	INTRON	INTRON	ZNF251	ENSG00000198169.9	ENST00000524394.2:ENST00000292562.12	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	25	2	2.13854	3.119835	4.10113	0.0776563	0.0226984	0.196285	0.124921
chr3	93905583	93905683	1753499	0	-	0.37	(0.35,0.378]	chr3	177790	4	SS5_PROX	SS5_PROX:INTRON	PROS1	ENSG00000184500.16	ENST00000394236.9:ENST00000648381.1:ENST00000648853.1:ENST00000650591.1:ENST00000348974.5:ENST00000647936.1:ENST00000407433.6:ENST00000649103.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	47	2	1.59505	3.11981	4.64457	0.040425	0.012652	0.161534	0.0926667
chr1	54240404	54240504	462083	0	-	0.54	(0.515,0.57]	chr1	55714	1	SS5_PROX	SS5_PROX:INTRON	SSBP3	ENSG00000157216.16	ENST00000610401.5:ENST00000357475.9:ENST00000371319.8:ENST00000417664.7:ENST00000533946.6:ENST00000326956.12:ENST00000371320.8:ENST00000426150.5:ENST00000444533.5:ENST00000420121.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	23	2	2.34087	3.119715	3.89856	0.0469761	0.0280943	0.151917	0.137011
chr12	100218014	100218114	5200268	0	+	0.53	(0.515,0.57]	chr12	492093	2	SS3_PROX	SS3_PROX:INTRON	ACTR6	ENSG00000075089.10	ENST00000553038.5:ENST00000188312.7:ENST00000546902.5:ENST00000548180.5:ENST00000552376.5:ENST00000552064.5:ENST00000551617.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	23	2	2.34087	3.119715	3.89856	0.0469761	0.0280943	0.151917	0.137011
chr15	34416626	34416726	6133055	0	-	0.54	(0.515,0.57]	chr15	584282	85	INTRON	INTRON	GOLGA8A	ENSG00000175265.18	ENST00000359187.5:ENST00000569781.1:ENST00000565885.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	23	2	2.34087	3.119715	3.89856	0.0469761	0.0280943	0.151917	0.137011
chr17	50726164	50726264	6627034	0	+	0.52	(0.515,0.57]	chr17	647183	18	INTRON	INTRON	LUC7L3	ENSG00000108848.16	ENST00000625349.2:ENST00000508045.5:ENST00000508218.5:ENST00000509335.5:ENST00000506686.5:ENST00000393227.6:ENST00000504563.6:ENST00000505658.6:ENST00000240304.5:ENST00000508482.5:ENST00000505619.5:ENST00000510984.5:ENST00000507200.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	23	2	2.34087	3.119715	3.89856	0.0469761	0.0280943	0.151917	0.137011
chr17	82596015	82596103	6693384	0	+	0.568182	(0.515,0.57]	chr17	654691	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	FOXK2	ENSG00000141568.21	ENST00000473637.6:ENST00000335255.10:ENST00000571989.1:ENST00000529652.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	23	2	2.34087	3.119715	3.89856	0.0469761	0.0280943	0.151917	0.137011
chr19	8400838	8400931	7010452	0	+	0.569892	(0.515,0.57]	chr19	696078	4	INTRON	INTRON	RAB11B	ENSG00000185236.12	ENST00000600719.5:ENST00000328024.11:ENST00000601897.1:ENST00000594216.1	protein_coding	protein_coding	protein_coding	protein_coding	1	23	2	2.34087	3.119715	3.89856	0.0469761	0.0280943	0.151917	0.137011
chr19	12952363	12952444	7022616	0	+	0.530864	(0.515,0.57]	chr19	698348	1	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	RAD23A	ENSG00000179262.10	ENST00000591499.5:ENST00000651137.1:ENST00000586534.6:ENST00000316856.7:ENST00000592268.5:ENST00000593114.5:ENST00000586375.1:ENST00000590881.1:ENST00000591467.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	23	2	2.34087	3.119715	3.89856	0.0469761	0.0280943	0.151917	0.137011
chr19	45176692	45176792	7190238	0	-	0.53	(0.515,0.57]	chr19	727916	111	INTRON	INTRON	TRAPPC6A	ENSG00000007255.10	ENST00000006275.8:ENST00000588062.5:ENST00000585934.1:ENST00000592647.1:ENST00000587818.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	23	2	2.34087	3.119715	3.89856	0.0469761	0.0280943	0.151917	0.137011
chr21	42855181	42855281	7467663	0	-	0.56	(0.515,0.57]	chr21	760950	1	SS5_PROX	SS5_PROX:INTRON	WDR4	ENSG00000160193.12	ENST00000330317.6:ENST00000476326.5:ENST00000398208.3:ENST00000492742.5:ENST00000479429.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	23	2	2.34087	3.119715	3.89856	0.0469761	0.0280943	0.151917	0.137011
chr21	43071286	43071385	7468122	0	-	0.525253	(0.515,0.57]	chr21	761072	23	INTRON	INTRON	CBS	ENSG00000160200.18	ENST00000352178.9:ENST00000359624.7:ENST00000398165.8:ENST00000398158.5:ENST00000441030.5:ENST00000470912.5:ENST00000465732.5:ENST00000488526.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	23	2	2.34087	3.119715	3.89856	0.0469761	0.0280943	0.151917	0.137011
chr22	23185722	23185821	7483255	0	+	0.565657	(0.515,0.57]	chr22	763531	31	INTRON	INTRON	BCR	ENSG00000186716.21	ENST00000479188.5:ENST00000359540.7:ENST00000305877.13	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	23	2	2.34087	3.119715	3.89856	0.0469761	0.0280943	0.151917	0.137011
chr3	107607271	107607371	1470591	0	+	0.57	(0.515,0.57]	chr3	154141	73	INTRON	INTRON	BBX	ENSG00000114439.19	ENST00000415149.6:ENST00000402543.5:ENST00000325805.13:ENST00000485939.5:ENST00000427402.5:ENST00000416476.6:ENST00000454540.5:ENST00000449335.5:ENST00000431630.5:ENST00000458458.5:ENST00000456817.5:ENST00000456419.5:ENST00000402163.6:ENST00000406780.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	23	2	2.34087	3.119715	3.89856	0.0469761	0.0280943	0.151917	0.137011
chr4	128091612	128091712	2042904	0	+	0.54	(0.515,0.57]	chr4	202877	1	SS5_PROX	SS5_PROX:INTRON	LARP1B	ENSG00000138709.19	ENST00000512292.5:ENST00000326639.11:ENST00000508819.5:ENST00000394288.7:ENST00000432347.6:ENST00000649983.1:ENST00000650359.1:ENST00000648358.1:ENST00000507377.1	protein_coding	protein_coding	protein_coding	protein_coding	1	23	2	2.34087	3.119715	3.89856	0.0469761	0.0280943	0.151917	0.137011
chr6	68079556	68079656	2886180	0	+	0.53	(0.515,0.57]	chr6	273699	192	INTRON	INTRON	ENSG00000285838	ENSG00000285838.2	ENST00000647954.1:ENST00000660461.1:ENST00000660159.1:ENST00000662357.1	lncRNA	lncRNA	lncRNA	lncRNA	1	23	2	2.34087	3.119715	3.89856	0.0469761	0.0280943	0.151917	0.137011
chr7	149240056	149240156	3445653	0	+	0.53	(0.515,0.57]	chr7	321410	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ZNF212	ENSG00000170260.9	ENST00000335870.7:ENST00000486371.1:ENST00000462724.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	23	2	2.34087	3.119715	3.89856	0.0469761	0.0280943	0.151917	0.137011
chr9	33069719	33069814	4243312	0	-	0.515789	(0.515,0.57]	chr9	390067	4	INTRON	INTRON	SMU1	ENSG00000122692.9	ENST00000397149.4	protein_coding	protein_coding	protein_coding	protein_coding	1	23	2	2.34087	3.119715	3.89856	0.0469761	0.0280943	0.151917	0.137011
chr1	151695411	151695510	226577	0	+	0.363636	(0.35,0.378]	chr1	25935	11	UTR3	UTR3:EXON_MRNA	SNX27	ENSG00000143376.14	ENST00000368843.8:ENST00000458013.7	protein_coding	protein_coding	protein_coding	protein_coding	7	157	2	2.50365	3.1196599999999997	3.73567	5.68631e-4	3.75394e-5	0.0217398	0.00523176
chr6	29629747	29629822	3076497	0	-	0.426667	(0.408,0.44]	chr6	286106	1	INTRON	INTRON	GABBR1	ENSG00000204681.11	ENST00000472823.5:ENST00000377016.8:ENST00000377034.9:ENST00000491829.5:ENST00000494877.5:ENST00000376977.7:ENST00000485508.5:ENST00000489385.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	189	2	2.57636	3.1196450000000002	3.66293	3.11491e-4	3.11579e-6	0.016213	0.00114097
chr1	2266040	2266140	2544	0	+	0.45	(0.44,0.476]	chr1	557	176	INTRON	INTRON	SKI	ENSG00000157933.10	ENST00000378536.5:ENST00000508416.1:ENST00000478223.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	112	2	3.01549	3.1194949999999997	3.2235	3.98783e-4	1.79714e-4	0.0185763	0.0116696
chr6	35460051	35460120	2852932	0	+	0.550725	(0.515,0.57]	chr6	269563	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	FANCE	ENSG00000112039.6	ENST00000229769.3:ENST00000648059.1:ENST00000696265.1:ENST00000696264.1:ENST00000696266.1:ENST00000696267.1:ENST00000696268.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	49	2	2.65834	3.11949	3.58064	0.0187418	6.54693e-4	0.117523	0.0233335
chr8	31097749	31097849	3728590	0	+	0.4	(0.378,0.408]	chr8	346616	5	INTRON	INTRON	WRN	ENSG00000165392.11	ENST00000650667.1:ENST00000298139.7:ENST00000521620.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	134	2	2.48561	3.119405	3.7532	0.00159433	1.39544e-5	0.0364566	0.00278668
chr20	47332258	47332358	7349267	0	-	0.4	(0.378,0.408]	chr20	749346	133	INTRON	INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000435836.5:ENST00000446894.5:ENST00000441977.1	protein_coding	protein_coding	protein_coding	protein_coding	7	123	2	1.9515	3.1193850000000003	4.28727	0.00641948	1.52039e-5	0.0695904	0.00293131
chr16	89398550	89398650	6542673	0	-	0.37	(0.35,0.378]	chr16	634250	21	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000647238.1:ENST00000644045.1:ENST00000643147.1:ENST00000644139.1:ENST00000568512.6:ENST00000566973.1:ENST00000562211.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	104	2	2.39484	3.1193299999999997	3.84382	0.00186176	3.33157e-4	0.039946	0.016912
chr10	86520666	86520765	4659355	0	-	0.424242	(0.408,0.44]	chr10	429302	22	INTRON	INTRON	WAPL	ENSG00000062650.20	ENST00000298767.10	protein_coding	protein_coding	protein_coding	protein_coding	2	32	2	2.00768	3.11932	4.23096	0.035843	0.0278028	0.152216	0.123904
chr16	53175122	53175222	6351925	0	+	0.42	(0.408,0.44]	chr16	609688	172	INTRON	INTRON	CHD9	ENSG00000177200.18	ENST00000447540.6:ENST00000566029.5:ENST00000615216.4:ENST00000565832.5:ENST00000564845.5:ENST00000398510.7:ENST00000564255.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	32	2	2.00768	3.11932	4.23096	0.035843	0.0278028	0.152216	0.123904
chr10	125072210	125072310	4713451	0	-	0.53	(0.515,0.57]	chr10	434897	327	INTRON	INTRON	CTBP2	ENSG00000175029.17	ENST00000337195.9:ENST00000411419.6:ENST00000494626.6:ENST00000531469.5:ENST00000460976.5:ENST00000476817.1:ENST00000530884.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	214	2	2.8303	3.119245	3.40819	1.58067e-5	3.02741e-6	0.00318411	0.00111862
chr1	89845879	89845979	159774	0	+	0.49	(0.476,0.515]	chr1	17281	17	INTRON	INTRON	LRRC8D	ENSG00000171492.14	ENST00000525774.5:ENST00000337338.9:ENST00000394593.7:ENST00000532201.5:ENST00000414841.1:ENST00000527156.1	protein_coding	protein_coding	protein_coding	protein_coding	2	32	2	1.99341	3.11921	4.24501	0.037389	0.0247713	0.155878	0.12011
chr9	130058565	130058665	4210999	0	+	0.5	(0.476,0.515]	chr9	385992	41	INTRON	INTRON	GPR107	ENSG00000148358.20	ENST00000372406.5:ENST00000372410.7:ENST00000347136.11:ENST00000493417.5:ENST00000610997.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	32	2	1.99341	3.11921	4.24501	0.037389	0.0247713	0.155878	0.12011
chr5	54310431	54310479	2620920	0	-	0.416667	(0.408,0.44]	chr5	248873	1	CDS_START	CDS_START:CDS:UTR5:EXON_MRNA	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000507646.2:ENST00000505630.5:ENST00000505383.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	85	2	2.82697	3.119205	3.41144	0.00178336	4.95662e-4	0.0379201	0.0201536
chr7	100327725	100327819	3586688	0	-	0.265957	[0,0.28]	chr7	334342	6	EXON_LNCRNA	EXON_LNCRNA:INTRON	PMS2P1	ENSG00000078319.11	ENST00000685724.1:ENST00000692351.1:ENST00000685541.1:ENST00000676200.2:ENST00000675162.2:ENST00000686838.1:ENST00000676241.1:ENST00000674981.1:ENST00000691424.1:ENST00000689817.1:ENST00000675610.2:ENST00000685901.1:ENST00000687177.1:ENST00000686797.1:ENST00000686203.1:ENST00000687616.1:ENST00000689267.1:ENST00000691905.1:ENST00000688544.1:ENST00000692261.1:ENST00000693192.1:ENST00000693215.1:ENST00000691707.1:ENST00000691275.1:ENST00000692687.1:ENST00000689609.1:ENST00000685852.1:ENST00000691910.1:ENST00000676204.1:ENST00000689000.1:ENST00000693042.1:ENST00000690446.1:ENST00000676274.2:ENST00000685473.1:ENST00000693010.1:ENST00000687801.1:ENST00000689447.1:ENST00000674842.2:ENST00000688104.1:ENST00000686890.1:ENST00000675639.2:ENST00000693302.1:ENST00000676155.2:ENST00000691428.1:ENST00000691046.1:ENST00000691816.1:ENST00000685670.1:ENST00000693490.1:ENST00000685700.1:ENST00000692947.1:ENST00000689907.1:ENST00000691110.1:ENST00000685499.1:ENST00000689019.1:ENST00000689719.1:ENST00000690988.1:ENST00000676256.1:ENST00000687713.1:ENST00000691247.1:ENST00000685805.1:ENST00000685342.1:ENST00000691107.1:ENST00000674972.2:ENST00000431037.4:ENST00000686569.1:ENST00000692675.1:ENST00000686594.1:ENST00000692231.1:ENST00000690914.1:ENST00000685607.1:ENST00000687053.1:ENST00000689538.1:ENST00000691660.1:ENST00000675620.2:ENST00000687026.1:ENST00000692752.1:ENST00000675640.2:ENST00000686825.1:ENST00000691842.1:ENST00000676269.2	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript:transcribed_unprocessed_pseudogene	2	74	2	2.89982	3.11918	3.33854	0.0158893	0.00278022	0.101453	0.0488412
chr6	166325363	166325452	3262942	0	-	0.348315	(0.32,0.35]	chr6	302919	4	INTRON	INTRON	SFT2D1	ENSG00000198818.10	ENST00000361731.4:ENST00000487841.5:ENST00000478705.5:ENST00000488773.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	43	2	1.78201	3.1191500000000003	4.45629	0.0365003	0.0246089	0.153759	0.12011
chr2	15548406	15548506	1073035	0	-	0.48	(0.476,0.515]	chr2	114459	87	INTRON	INTRON	NBAS	ENSG00000151779.13	ENST00000281513.10	protein_coding	protein_coding	protein_coding	protein_coding	5	95	2	2.4029	3.1190049999999996	3.83511	0.0016811	2.63754e-4	0.0381232	0.0149561
chr9	83674426	83674526	4272742	0	-	0.31	(0.28,0.32]	chr9	392953	47	INTRON	INTRON	UBQLN1	ENSG00000135018.14	ENST00000376395.9:ENST00000533705.5:ENST00000257468.11	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	46	2	1.81152	3.11891	4.4263	0.034446	0.0330296	0.147767	0.133816
chr7	148857104	148857204	3670491	0	-	0.36	(0.35,0.378]	chr7	340628	94	INTRON	INTRON	EZH2	ENSG00000106462.12	ENST00000683292.1:ENST00000320356.7:ENST00000492143.5:ENST00000478654.5:ENST00000350995.6:ENST00000460911.5:ENST00000683744.1:ENST00000682317.1:ENST00000682263.1:ENST00000684300.1:ENST00000476773.5:ENST00000483967.5:ENST00000498186.5:ENST00000483012.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	105	2	2.6264	3.118865	3.61133	9.14099e-4	5.94723e-4	0.0278396	0.0221865
chr1	151438829	151438929	554752	0	-	0.5	(0.476,0.515]	chr1	65538	76	INTRON	INTRON	POGZ	ENSG00000143442.22	ENST00000271715.7:ENST00000358476.7:ENST00000392723.5:ENST00000368863.6:ENST00000409503.5:ENST00000531094.5:ENST00000491586.5:ENST00000485040.5:ENST00000467287.5:ENST00000533461.5:ENST00000533351.5:ENST00000450842.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	53	2	2.94692	3.11883	3.29074	0.00794331	0.00272563	0.0797304	0.0467523
chr17	57108148	57108248	6632582	0	+	0.48	(0.476,0.515]	chr17	647905	1	SS5_PROX	SS5_PROX:INTRON	AKAP1	ENSG00000121057.13	ENST00000337714.8:ENST00000571629.5:ENST00000621116.4:ENST00000572557.5:ENST00000481416.5:ENST00000539273.5:ENST00000314126.4:ENST00000576295.5:ENST00000573326.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	53	2	2.94692	3.11883	3.29074	0.00794331	0.00272563	0.0797304	0.0467523
chr10	31897690	31897789	4590009	0	-	0.363636	(0.35,0.378]	chr10	423163	357	INTRON	INTRON	ARHGAP12	ENSG00000165322.18	ENST00000344936.7:ENST00000375245.8:ENST00000396144.8:ENST00000375250.9:ENST00000311380.8	protein_coding	protein_coding	protein_coding	protein_coding	4	51	2	1.9392	3.1187950000000004	4.29839	0.0294717	0.0126486	0.128055	0.0982897
chr7	152281524	152281623	3679737	0	-	0.484848	(0.476,0.515]	chr7	341617	73	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000684262.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	197	2	2.59842	3.11876	3.6391	4.33261e-4	8.83793e-7	0.0190829	5.35137e-4
chr13	20859141	20859240	5555907	0	-	0.525253	(0.515,0.57]	chr13	531012	30	INTRON	INTRON	XPO4	ENSG00000132953.18	ENST00000255305.11:ENST00000490513.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	29	2	2.03361	3.11871	4.20381	0.0325854	0.0189208	0.145164	0.108861
chr21	32759401	32759494	7440350	0	-	0.333333	(0.32,0.35]	chr21	759268	1	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PAXBP1	ENSG00000159086.15	ENST00000331923.9:ENST00000443785.5:ENST00000290178.4:ENST00000472588.5:ENST00000464256.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	181	2	2.69711	3.118455	3.5398	7.57212e-4	1.09854e-5	0.0251942	0.00244426
chr5	150018997	150019097	2518848	0	+	0.5	(0.476,0.515]	chr5	240787	3	SS5_PROX	SS5_PROX:INTRON	HMGXB3	ENSG00000113716.13	ENST00000613459.4:ENST00000503427.5:ENST00000502717.6	protein_coding	protein_coding	protein_coding	protein_coding	5	95	2	2.43223	3.1183899999999998	3.80455	0.00145905	3.04782e-4	0.0349875	0.0161236
chr2	75935571	75935671	817515	0	+	0.36	(0.35,0.378]	chr2	91391	627	INTRON	INTRON	ENSG00000287474	ENSG00000287474.1	ENST00000670606.1	lncRNA	lncRNA	lncRNA	lncRNA	3	78	2	2.82526	3.118325	3.41139	0.00269503	0.00143263	0.0466389	0.0347139
chr2	15520746	15520846	1072756	0	-	0.38	(0.378,0.408]	chr2	114441	90	INTRON	INTRON	NBAS	ENSG00000151779.13	ENST00000281513.10	protein_coding	protein_coding	protein_coding	protein_coding	4	100	2	2.5938	3.118145	3.64249	0.00614976	2.75279e-5	0.0676501	0.00414532
chr1	6195452	6195552	366158	0	-	0.48	(0.476,0.515]	chr1	43024	20	INTRON	INTRON	RPL22	ENSG00000116251.11	ENST00000234875.9:ENST00000480661.1:ENST00000497965.5:ENST00000471204.5:ENST00000465387.5:ENST00000462296.5:ENST00000465335.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	26	2	2.40608	3.11813	3.83018	0.0425709	0.0423385	0.161744	0.148082
chr15	41532654	41532749	6153896	0	-	0.494737	(0.476,0.515]	chr15	585588	11	INTRON	INTRON	RPAP1	ENSG00000103932.12	ENST00000304330.9:ENST00000561603.5:ENST00000562303.5:ENST00000568413.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	26	2	2.40608	3.11813	3.83018	0.0425709	0.0423385	0.161744	0.148082
chr18	46255607	46255706	6899904	0	+	0.50505	(0.476,0.515]	chr18	683638	14	INTRON	INTRON	C18orf25	ENSG00000152242.11	ENST00000615052.5:ENST00000619301.4	protein_coding	protein_coding	protein_coding	protein_coding	1	26	2	2.40608	3.11813	3.83018	0.0425709	0.0423385	0.161744	0.148082
chr2	148728724	148728824	892595	0	+	0.51	(0.476,0.515]	chr2	98796	360	INTRON	INTRON	EPC2	ENSG00000135999.12	ENST00000457184.5:ENST00000258484.11:ENST00000397424.2	protein_coding	protein_coding	protein_coding	protein_coding	1	26	2	2.40608	3.11813	3.83018	0.0425709	0.0423385	0.161744	0.148082
chrX	153915465	153915564	7911580	0	-	0.484848	(0.476,0.515]	chrX	805259	12	INTRON	INTRON	ARHGAP4	ENSG00000089820.16	ENST00000393721.5:ENST00000370028.7:ENST00000420383.5:ENST00000350060.10:ENST00000370016.5:ENST00000470209.5:ENST00000494302.5:ENST00000404127.6:ENST00000494813.5:ENST00000422918.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	26	2	2.40608	3.11813	3.83018	0.0425709	0.0423385	0.161744	0.148082
chr1	179206552	179206652	592848	0	-	0.34	(0.32,0.35]	chr1	71074	636	INTRON	INTRON	ABL2	ENSG00000143322.21	ENST00000502732.6:ENST00000367623.8:ENST00000507173.5:ENST00000511413.5:ENST00000668691.1:ENST00000392043.4:ENST00000660584.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	42	2	1.61669	3.1177900000000003	4.61889	0.0578816	0.0166646	0.188651	0.102621
chr8	6725139	6725239	3695170	0	+	0.35	(0.32,0.35]	chr8	342833	2	SS5_PROX	SS5_PROX:INTRON	AGPAT5	ENSG00000155189.12	ENST00000285518.11:ENST00000523234.5:ENST00000518327.1:ENST00000523586.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	42	2	1.61669	3.1177900000000003	4.61889	0.0578816	0.0166646	0.188651	0.102621
chr20	38068536	38068635	7269232	0	+	0.444444	(0.44,0.476]	chr20	738712	19	INTRON	INTRON	RPRD1B	ENSG00000101413.12	ENST00000462548.6:ENST00000373433.9:ENST00000449186.2:ENST00000618318.1:ENST00000614670.1:ENST00000622494.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	38	2	1.62896	3.117715	4.60647	0.0546679	0.0102339	0.182674	0.0850389
chr8	11864596	11864696	3908827	0	-	0.46	(0.44,0.476]	chr8	358222	1	SS5_ADJ	SS5_ADJ:SS3_PROX:SS5_PROX:INTRON	CTSB	ENSG00000164733.22	ENST00000677671.1:ENST00000678092.1:ENST00000679128.1:ENST00000677873.1:ENST00000676691.1:ENST00000678598.1:ENST00000353047.11:ENST00000677650.1:ENST00000526481.7:ENST00000676825.1:ENST00000678242.1:ENST00000677366.1:ENST00000677544.1:ENST00000530640.7:ENST00000677418.1:ENST00000677047.1:ENST00000676502.1:ENST00000531089.6:ENST00000678629.1:ENST00000678145.1:ENST00000678929.1:ENST00000677819.1:ENST00000677415.1:ENST00000678357.1:ENST00000676755.1:ENST00000679051.1:ENST00000453527.7:ENST00000678067.1:ENST00000679140.1:ENST00000677082.1:ENST00000533455.6:ENST00000531551.5:ENST00000534382.6:ENST00000679214.1:ENST00000531502.6:ENST00000534510.6:ENST00000677865.1:ENST00000533572.6:ENST00000345125.8:ENST00000526645.6:ENST00000534149.6:ENST00000505496.7:ENST00000532392.2:ENST00000676843.1:ENST00000524500.6:ENST00000525076.6:ENST00000527215.7:ENST00000528965.2:ENST00000532656.7:ENST00000526195.6:ENST00000678615.1:ENST00000527243.6:ENST00000530296.6:ENST00000534636.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	38	2	1.62896	3.117715	4.60647	0.0546679	0.0102339	0.182674	0.0850389
chr21	33548007	33548103	7397476	0	+	0.416667	(0.408,0.44]	chr21	753513	11	INTRON	INTRON	SON	ENSG00000159140.22	ENST00000356577.10:ENST00000381692.6:ENST00000695559.1:ENST00000455528.5:ENST00000300278.8:ENST00000381679.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	85	2	2.29777	3.117545	3.93732	0.0067764	1.0367e-4	0.0711802	0.00863144
chr21	46199855	46199955	7470573	0	-	0.43	(0.408,0.44]	chr21	761464	32	INTRON	INTRON	LSS	ENSG00000160285.15	ENST00000356396.8:ENST00000397728.8:ENST00000457828.6:ENST00000522411.5	protein_coding	protein_coding	protein_coding	protein_coding	5	96	2	2.47605	3.117435	3.75882	0.00116417	4.04678e-4	0.0314524	0.0185763
chrX	47195217	47195316	7655569	0	+	0.474747	(0.44,0.476]	chrX	783191	8	INTRON	INTRON	UBA1	ENSG00000130985.17	ENST00000377351.8:ENST00000412206.5:ENST00000427561.5:ENST00000335972.11:ENST00000442035.5:ENST00000457753.5	protein_coding	protein_coding	protein_coding	protein_coding	13	260	2	2.86874	3.11735	3.36596	1.24658e-5	6.90672e-6	0.00280854	0.00187033
chr11	63689768	63689868	4799996	0	+	0.57	(0.515,0.57]	chr11	444936	76	INTRON	INTRON	RTN3	ENSG00000133318.14	ENST00000341307.6:ENST00000356000.7:ENST00000542238.5:ENST00000538995.1:ENST00000339997.8:ENST00000540798.5:ENST00000537981.5:ENST00000377819.10:ENST00000536011.5:ENST00000543123.1:ENST00000543552.5:ENST00000545432.5:ENST00000338850.5:ENST00000354497.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	112	2	3.10593	3.11719	3.12845	4.79786e-4	2.50623e-5	0.0203136	0.00392664
chr17	47678601	47678696	6622895	0	+	0.505263	(0.476,0.515]	chr17	646108	3	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	KPNB1	ENSG00000108424.11	ENST00000535458.6:ENST00000583648.6:ENST00000290158.9:ENST00000540627.5:ENST00000582097.5:ENST00000677341.1:ENST00000580573.2:ENST00000580158.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	83	2	2.59304	3.117155	3.64127	0.00158794	6.42302e-4	0.0367961	0.0231685
chr17	78184554	78184654	6844658	0	-	0.48	(0.476,0.515]	chr17	677226	1	SS5_PROX	SS5_PROX:INTRON	TK1	ENSG00000167900.12	ENST00000301634.12:ENST00000588734.5:ENST00000590862.5:ENST00000590430.5:ENST00000586613.1:ENST00000592126.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	83	2	2.55884	3.11714	3.67544	0.00186081	5.51624e-4	0.039946	0.0216014
chr3	156543369	156543469	1844390	0	-	0.38	(0.378,0.408]	chr3	185574	1	SS3_PROX	SS3_PROX:INTRON	SSR3	ENSG00000114850.7	ENST00000265044.7:ENST00000467789.5:ENST00000476217.5:ENST00000498205.5:ENST00000478842.5:ENST00000464138.1:ENST00000463503.5:ENST00000496050.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	110	2	2.27284	3.11709	3.96134	0.00173415	1.71065e-4	0.03851	0.0119955
chr1	47341910	47342009	97655	0	+	0.525253	(0.515,0.57]	chr1	13138	74	INTRON	INTRON	CMPK1	ENSG00000162368.14	ENST00000371873.10:ENST00000371871.8:ENST00000471289.2:ENST00000450808.2:ENST00000371870.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	72	2	2.496	3.117045	3.73809	0.00225531	3.11298e-4	0.0436331	0.0162055
chr10	37848501	37848601	4602508	0	-	0.52	(0.515,0.57]	chr10	423985	100	INTRON	INTRON	ZNF248	ENSG00000198105.16	ENST00000615949.6:ENST00000485560.5:ENST00000395867.8:ENST00000357328.8:ENST00000611278.4:ENST00000374648.7:ENST00000395873.7:ENST00000395874.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	72	2	2.496	3.117045	3.73809	0.00225531	3.11298e-4	0.0436331	0.0162055
chr6	158564328	158564428	3021641	0	+	0.62	(0.57,1]	chr6	281792	37	INTRON	INTRON	TMEM181	ENSG00000146433.10	ENST00000367090.4:ENST00000684151.1	protein_coding	protein_coding	protein_coding	protein_coding	3	38	2	2.81057	3.1169000000000002	3.42323	0.00169295	8.58388e-4	0.0381936	0.0267428
chr17	82560376	82560475	6693013	0	+	0.59596	(0.57,1]	chr17	654633	5	INTRON	INTRON	FOXK2	ENSG00000141568.21	ENST00000473637.6:ENST00000335255.10:ENST00000527313.6:ENST00000570585.1:ENST00000531030.5:ENST00000526383.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	31	2	2.53383	3.116845	3.69986	0.02547	1.9698e-4	0.12011	0.0122531
chr3	72415811	72415911	1745613	0	-	0.38	(0.378,0.408]	chr3	177368	353	INTRON	INTRON	RYBP	ENSG00000163602.12	ENST00000477973.5	protein_coding	protein_coding	protein_coding	protein_coding	6	140	2	2.92509	3.116825	3.30856	0.00167715	9.44246e-6	0.0370386	0.00222322
chr16	68204962	68205061	6371436	0	+	0.373737	(0.35,0.378]	chr16	612250	41	INTRON	INTRON	NFATC3	ENSG00000072736.19	ENST00000563319.5:ENST00000569766.5:ENST00000566301.5:ENST00000575270.5:ENST00000346183.8:ENST00000349223.9:ENST00000329524.8:ENST00000562926.5:ENST00000570212.5:ENST00000563796.5:ENST00000567152.5:ENST00000563288.5:ENST00000535127.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	27	2	2.1617	3.1167800000000003	4.07186	0.0771502	0.0279478	0.196285	0.137011
chr2	222644885	222644984	1333007	0	-	0.373737	(0.35,0.378]	chr2	139908	15	INTRON	INTRON	FARSB	ENSG00000116120.11	ENST00000281828.8	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	2.1617	3.1167800000000003	4.07186	0.0771502	0.0279478	0.196285	0.137011
chr3	136714720	136714820	1828085	0	-	0.37	(0.35,0.378]	chr3	183745	834	INTRON	INTRON	STAG1	ENSG00000118007.13	ENST00000383202.7:ENST00000236698.9:ENST00000434713.6:ENST00000483235.5:ENST00000629124.2:ENST00000487065.5:ENST00000480733.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	27	2	2.1617	3.1167800000000003	4.07186	0.0771502	0.0279478	0.196285	0.137011
chr3	185746808	185746908	1885566	0	-	0.37	(0.35,0.378]	chr3	188573	481	INTRON	INTRON	IGF2BP2	ENSG00000073792.16	ENST00000382199.7:ENST00000346192.7:ENST00000457616.6:ENST00000421047.3:ENST00000461957.5:ENST00000493302.5:ENST00000466476.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	27	2	2.1617	3.1167800000000003	4.07186	0.0771502	0.0279478	0.196285	0.137011
chr6	37949096	37949196	2858327	0	+	0.37	(0.35,0.378]	chr6	270231	187	INTRON	INTRON	ZFAND3	ENSG00000156639.12	ENST00000287218.9:ENST00000373391.6:ENST00000474522.5:ENST00000373389.5	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	2.1617	3.1167800000000003	4.07186	0.0771502	0.0279478	0.196285	0.137011
chr7	65386904	65387004	3322581	0	+	0.37	(0.35,0.378]	chr7	308923	126	INTRON	INTRON	ZNF92	ENSG00000146757.14	ENST00000357512.3:ENST00000488849.1:ENST00000431504.1:ENST00000328747.12:ENST00000450302.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	27	2	2.1617	3.1167800000000003	4.07186	0.0771502	0.0279478	0.196285	0.137011
chr1	50957971	50958071	452233	0	-	0.45	(0.44,0.476]	chr1	54267	996	INTRON	INTRON	FAF1	ENSG00000185104.21	ENST00000396153.7:ENST00000487898.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	154	2	2.97454	3.11677	3.259	7.44944e-5	7.31914e-5	0.00767614	0.00720956
chr2	230728751	230728851	1030318	0	+	0.44	(0.408,0.44]	chr2	110002	143	INTRON	INTRON	CAB39	ENSG00000135932.12	ENST00000258418.10:ENST00000409788.7:ENST00000410084.7	protein_coding	protein_coding	protein_coding	protein_coding	3	70	2	2.94481	3.1166650000000002	3.28852	0.00287185	0.00110214	0.0474836	0.03038
chr3	177180295	177180395	1872277	0	-	0.37	(0.35,0.378]	chr3	187438	90	INTRON	INTRON	TBL1XR1	ENSG00000177565.18	ENST00000457928.7:ENST00000430069.5:ENST00000673974.1:ENST00000352800.10:ENST00000422442.6:ENST00000428970.5:ENST00000424913.5:ENST00000437738.5:ENST00000431421.5:ENST00000635794.1:ENST00000630796.2:ENST00000450267.5:ENST00000630833.2:ENST00000431674.5:ENST00000422066.5:ENST00000443315.5:ENST00000627825.2:ENST00000427349.5:ENST00000413084.5:ENST00000637137.1:ENST00000491623.2:ENST00000637544.1:ENST00000636187.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	91	2	2.71933	3.116405	3.51348	0.00136294	9.31518e-4	0.0336321	0.0278746
chr6	26196264	26196360	3071004	0	-	0.4375	(0.408,0.44]	chr6	285430	8	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ENSG00000282988	ENSG00000282988.2	ENST00000635641.1:ENST00000650491.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	87	2	2.59487	3.11636	3.63785	0.00202403	4.70012e-4	0.04086	0.0196294
chr1	45605702	45605795	93423	0	+	0.473118	(0.44,0.476]	chr1	12599	3	INTRON	INTRON	NASP	ENSG00000132780.17	ENST00000437901.6:ENST00000537798.5:ENST00000437362.6:ENST00000350030.8:ENST00000464190.6:ENST00000527359.5:ENST00000528084.5:ENST00000453748.5:ENST00000525515.5:ENST00000527470.5:ENST00000529333.5:ENST00000528238.5:ENST00000534101.1:ENST00000470768.5:ENST00000372052.8:ENST00000351223.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	156	2	2.82628	3.116285	3.40629	1.78564e-4	3.1727e-5	0.0116619	0.00471103
chr4	25397896	25397995	1934181	0	+	0.353535	(0.35,0.378]	chr4	194250	6	INTRON	INTRON	ANAPC4	ENSG00000053900.11	ENST00000315368.8:ENST00000510092.5:ENST00000503805.5:ENST00000505842.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	39	2	2.04224	3.11623	4.19022	0.0363073	0.0209891	0.138959	0.122348
chr9	129011269	129011365	4359876	0	-	0.635417	(0.57,1]	chr9	400811	7	EXON_MRNA	EXON_MRNA:INTRON	SH3GLB2	ENSG00000148341.18	ENST00000372564.8:ENST00000479237.5:ENST00000372559.5:ENST00000372554.8:ENST00000461811.5:ENST00000416629.5:ENST00000417224.5:ENST00000455407.5:ENST00000483980.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	28	2	1.52818	3.116225	4.70427	0.0508101	9.25341e-4	0.175989	0.0278396
chr2	74028313	74028413	812222	0	+	0.27	[0,0.28]	chr2	90852	248	INTRON	INTRON	TET3	ENSG00000187605.16	ENST00000409262.8:ENST00000305799.8	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	2.27119	3.116205	3.96122	0.070351	0.0617993	0.193423	0.184298
chr8	116713424	116713524	4033803	0	-	0.24	[0,0.28]	chr8	368058	158	INTRON	INTRON	EIF3H	ENSG00000147677.12	ENST00000521861.6:ENST00000276682.8:ENST00000518949.5:ENST00000518995.5:ENST00000522800.5:ENST00000518034.5:ENST00000517974.1:ENST00000522453.1:ENST00000519046.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	34	2	2.27119	3.116205	3.96122	0.070351	0.0617993	0.193423	0.184298
chr2	65110403	65110502	1142765	0	-	0.414141	(0.408,0.44]	chr2	122186	52	INTRON	INTRON	RAB1A	ENSG00000138069.18	ENST00000649427.1:ENST00000494188.1:ENST00000409784.8:ENST00000409892.5:ENST00000409751.1:ENST00000398529.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	131	2	3.11065	3.11618	3.12171	6.63666e-4	3.19635e-5	0.0234815	0.00451543
chr7	127663048	127663148	3402500	0	+	0.53	(0.515,0.57]	chr7	318063	102	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000463020.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	60	2	2.87626	3.116175	3.35609	0.00174131	0.00136224	0.0375363	0.0339121
chr9	135939016	135939094	4372334	0	-	0.5	(0.476,0.515]	chr9	402508	3	INTRON	INTRON	UBAC1	ENSG00000130560.9	ENST00000371756.4:ENST00000489050.5:ENST00000465873.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	187	2	2.58281	3.1161649999999996	3.64952	1.85131e-4	6.88757e-6	0.0118667	0.00196831
chr17	61927348	61927426	6809607	0	-	0.538462	(0.515,0.57]	chr17	672791	2	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	INTS2	ENSG00000108506.13	ENST00000251334.7:ENST00000444766.7:ENST00000646745.1:ENST00000647009.1:ENST00000646954.1:ENST00000583076.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	60	2	2.78208	3.11611	3.45014	0.00209264	0.00116948	0.0424943	0.0312127
chr6	83177413	83177508	3145712	0	-	0.357895	(0.35,0.378]	chr6	293277	10	INTRON	INTRON	PGM3	ENSG00000013375.16	ENST00000513973.6:ENST00000512866.5:ENST00000650640.1:ENST00000616566.5:ENST00000283977.9:ENST00000651425.1:ENST00000651698.1:ENST00000650642.1:ENST00000651204.1:ENST00000652222.1:ENST00000506587.5:ENST00000509219.2:ENST00000652468.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	46	2	1.4414	3.116095	4.79079	0.0629423	0.00846427	0.196658	0.0776969
chr7	105060566	105060665	3375088	0	+	0.40404	(0.378,0.408]	chr7	315877	192	INTRON	INTRON	KMT2E	ENSG00000005483.22	ENST00000622386.2:ENST00000257745.9:ENST00000334884.9:ENST00000311117.8:ENST00000478990.5:ENST00000495267.5:ENST00000476671.5:ENST00000667857.1:ENST00000474203.5:ENST00000482560.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	187	2	2.57873	3.116	3.65327	7.84531e-5	5.02926e-5	0.00738014	0.0061299
chr6	27130787	27130885	3072346	0	-	0.326531	(0.32,0.35]	chr6	285574	40	INTRON	INTRON	H2BC11	ENSG00000124635.9	ENST00000607124.1:ENST00000606923.1	protein_coding	protein_coding	protein_coding	protein_coding	20	503	2	2.86419	3.115965	3.36774	4.84026e-5	1.22258e-7	0.0060426	1.58108e-4
chr4	78826155	78826255	1981885	0	+	0.43	(0.408,0.44]	chr4	198471	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	BMP2K	ENSG00000138756.19	ENST00000389010.7:ENST00000502613.3:ENST00000502871.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	21	423	2	2.43353	3.115875	3.79822	8.69738e-5	1.36415e-8	0.00838464	3.96402e-5
chr1	17432375	17432474	384913	0	-	0.606061	(0.57,1]	chr1	45493	28	INTRON	INTRON	RCC2	ENSG00000179051.14	ENST00000375436.9:ENST00000375433.3	protein_coding	protein_coding	protein_coding	protein_coding	2	31	2	2.66801	3.11585	3.56369	0.0169968	4.26536e-4	0.110899	0.0189958
chr2	53939266	53939360	1120256	0	-	0.287234	(0.28,0.32]	chr2	120078	14	INTRON	INTRON	PSME4	ENSG00000068878.15	ENST00000404125.6:ENST00000389993.7:ENST00000481518.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	68	2	2.51488	3.11552	3.71616	0.0380957	4.76221e-4	0.141678	0.0197443
chr1	174783938	174784038	263388	0	+	0.38	(0.378,0.408]	chr1	30882	312	INTRON	INTRON	RABGAP1L	ENSG00000152061.24	ENST00000251507.8:ENST00000681986.1:ENST00000529145.6:ENST00000325589.9:ENST00000469553.6:ENST00000367687.5:ENST00000347255.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	26	2	2.13703	3.1154100000000002	4.09379	0.0797592	0.023912	0.19979	0.129075
chr11	67296612	67296710	4814180	0	+	0.397959	(0.378,0.408]	chr11	448332	41	INTRON	INTRON	ANKRD13D	ENSG00000172932.16	ENST00000511455.7:ENST00000308440.11:ENST00000447274.7:ENST00000506531.5:ENST00000504186.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	26	2	2.13703	3.1154100000000002	4.09379	0.0797592	0.023912	0.19979	0.129075
chr2	183154246	183154346	938784	0	+	0.4	(0.378,0.408]	chr2	103001	22	INTRON	INTRON	NUP35	ENSG00000163002.13	ENST00000409798.5:ENST00000374930.7:ENST00000479162.5:ENST00000295119.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	26	2	2.13703	3.1154100000000002	4.09379	0.0797592	0.023912	0.19979	0.129075
chr2	235831706	235831806	1044727	0	+	0.38	(0.378,0.408]	chr2	111284	240	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1:ENST00000409538.5:ENST00000614409.4:ENST00000619456.4:ENST00000428334.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	26	2	2.13703	3.1154100000000002	4.09379	0.0797592	0.023912	0.19979	0.129075
chr3	71463350	71463450	1743951	0	-	0.38	(0.378,0.408]	chr3	177319	1027	INTRON	INTRON	FOXP1	ENSG00000114861.24	ENST00000318789.11:ENST00000649528.3:ENST00000615603.5:ENST00000493089.7:ENST00000649596.1:ENST00000648710.2:ENST00000327590.9:ENST00000648321.1:ENST00000649610.2:ENST00000648718.1:ENST00000649631.1:ENST00000648384.1:ENST00000648380.1:ENST00000650068.2:ENST00000650295.1:ENST00000648895.1:ENST00000318779.7:ENST00000471386.3:ENST00000650156.1:ENST00000649133.1:ENST00000649145.1:ENST00000648192.1:ENST00000649328.1:ENST00000649175.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	26	2	2.13703	3.1154100000000002	4.09379	0.0797592	0.023912	0.19979	0.129075
chr6	41924008	41924107	2864559	0	+	0.40404	(0.378,0.408]	chr6	270914	18	INTRON	INTRON	BYSL	ENSG00000112578.10	ENST00000230340.9:ENST00000494032.1:ENST00000489290.1:ENST00000475702.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	26	2	2.13703	3.1154100000000002	4.09379	0.0797592	0.023912	0.19979	0.129075
chr9	42846979	42847079	4127434	0	+	0.4	(0.378,0.408]	chr9	376098	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	ANKRD20A7P	ENSG00000236816.3	ENST00000663914.1:ENST00000667970.1:ENST00000671239.1:ENST00000668653.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	1	26	2	2.13703	3.1154100000000002	4.09379	0.0797592	0.023912	0.19979	0.129075
chr9	130614345	130614445	4213445	0	+	0.4	(0.378,0.408]	chr9	386300	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	FUBP3	ENSG00000107164.16	ENST00000319725.10:ENST00000650723.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	26	2	2.13703	3.1154100000000002	4.09379	0.0797592	0.023912	0.19979	0.129075
chr4	56929046	56929144	1963530	0	+	0.428571	(0.408,0.44]	chr4	197072	10	INTRON	INTRON	REST	ENSG00000084093.19	ENST00000640168.2:ENST00000309042.12:ENST00000640343.2:ENST00000514063.2:ENST00000638187.2:ENST00000616975.5:ENST00000622863.4:ENST00000619101.5:ENST00000611211.2:ENST00000675105.1:ENST00000675341.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	47	2	2.00629	3.11538	4.22447	0.0189661	0.0161655	0.109464	0.108861
chr3	101686676	101686718	1758947	0	-	0.5	(0.476,0.515]	chr3	178440	1	UTR5	UTR5:EXON_MRNA	RPL24	ENSG00000114391.13	ENST00000394077.8:ENST00000464595.1:ENST00000495401.5:ENST00000469605.1:ENST00000470961.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	55	1090	2	2.98005	3.1153649999999997	3.25068	1.28492e-7	6.62101e-8	1.72161e-4	1.10609e-4
chr4	56933149	56933249	1963572	0	+	0.32	(0.28,0.32]	chr4	197077	11	UTR3	UTR3:EXON_MRNA:INTRON	REST	ENSG00000084093.19	ENST00000640168.2:ENST00000309042.12:ENST00000640343.2:ENST00000514063.2:ENST00000638187.2:ENST00000616975.5:ENST00000619101.5:ENST00000675105.1:ENST00000675341.1	protein_coding	protein_coding	protein_coding	protein_coding	3	54	2	1.79721	3.1153049999999998	4.4334	0.0408024	0.0163355	0.1451	0.109464
chr22	41159651	41159747	7522188	0	+	0.447917	(0.44,0.476]	chr22	768622	13	EXON_MRNA	EXON_MRNA:INTRON	EP300	ENSG00000100393.14	ENST00000263253.9:ENST00000674155.1:ENST00000635552.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	52	2	2.9195	3.1153000000000004	3.3111	0.0102021	0.0020006	0.0850389	0.0412555
chr16	75004969	75005069	6389478	0	+	0.41	(0.408,0.44]	chr16	614482	22	INTRON	INTRON	ZNRF1	ENSG00000186187.12	ENST00000335325.9:ENST00000320619.10:ENST00000567962.5:ENST00000566250.5:ENST00000564320.1:ENST00000568511.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	38	2	1.6306	3.115195	4.59979	0.0544158	0.0109537	0.182272	0.0873034
chr7	105334762	105334862	3603364	0	-	0.43	(0.408,0.44]	chr7	336161	278	INTRON	INTRON	SRPK2	ENSG00000135250.17	ENST00000393651.8:ENST00000482897.5:ENST00000460391.5:ENST00000462282.5:ENST00000465112.5:ENST00000482862.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	129	2	2.71189	3.11509	3.51829	3.3885e-4	9.30234e-5	0.0163824	0.00857086
chr10	68426067	68426166	4639296	0	-	0.494949	(0.476,0.515]	chr10	426660	28	INTRON	INTRON	DNA2	ENSG00000138346.15	ENST00000358410.8:ENST00000551118.6:ENST00000399179.6:ENST00000399180.3:ENST00000440722.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	38	2	1.61586	3.11494	4.61402	0.0567093	0.00947755	0.185107	0.0817766
chr3	33683704	33683781	1653659	0	-	0.493506	(0.476,0.515]	chr3	169661	1	SS3_PROX	SS3_PROX:INTRON	CLASP2	ENSG00000163539.18	ENST00000399362.8:ENST00000682230.1:ENST00000468888.6:ENST00000359576.9:ENST00000462878.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	38	2	1.61586	3.11494	4.61402	0.0567093	0.00947755	0.185107	0.0817766
chr5	31496071	31496171	2596642	0	-	0.49	(0.476,0.515]	chr5	246662	3	INTRON	INTRON	DROSHA	ENSG00000113360.17	ENST00000344624.8:ENST00000511367.6:ENST00000513349.5:ENST00000512076.1	protein_coding	protein_coding	protein_coding	protein_coding	3	38	2	1.61586	3.11494	4.61402	0.0567093	0.00947755	0.185107	0.0817766
chr7	157189890	157189989	3454461	0	+	0.484848	(0.476,0.515]	chr7	322957	7	INTRON	INTRON	UBE3C	ENSG00000009335.18	ENST00000348165.10	protein_coding	protein_coding	protein_coding	protein_coding	3	70	2	2.73564	3.114875	3.49411	0.00333144	9.23453e-4	0.0512081	0.0278392
chr6	27853424	27853524	2839172	0	+	0.57	(0.515,0.57]	chr6	266461	14	UTR3	UTR3:EXON_MRNA	H2BC15	ENSG00000233822.6	ENST00000606613.1	protein_coding	protein_coding	protein_coding	protein_coding	17	288	2	2.68212	3.1148249999999997	3.54753	1.21193e-5	3.24337e-7	0.00276945	2.85941e-4
chrX	109729343	109729443	7861661	0	-	0.32	(0.28,0.32]	chrX	801455	328	INTRON	INTRON	ACSL4	ENSG00000068366.21	ENST00000469796.7:ENST00000672401.1:ENST00000348502.10:ENST00000340800.7:ENST00000684030.1:ENST00000682031.1:ENST00000671846.1:ENST00000672282.1:ENST00000502391.6:ENST00000684414.1:ENST00000673016.1:ENST00000508092.5:ENST00000504383.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	88	2	2.70831	3.114785	3.52126	0.00378444	0.00175369	0.0562562	0.0376491
chr7	73520228	73520328	3555080	0	-	0.42	(0.408,0.44]	chr7	330813	90	INTRON	INTRON	BAZ1B	ENSG00000009954.11	ENST00000339594.9:ENST00000404251.1	protein_coding	protein_coding	protein_coding	protein_coding	3	71	2	2.72208	3.114695	3.50731	0.00364449	8.5918e-4	0.0535094	0.0265787
chr2	107732745	107732845	1205877	0	-	0.38	(0.378,0.408]	chr2	128532	151	INTRON	INTRON	LINC01885:ENSG00000286769	ENSG00000237880.2:ENSG00000286769.1	ENST00000654481.1:ENST00000669817.1	lncRNA	lncRNA	lncRNA	lncRNA	3	74	2	2.80155	3.1145250000000004	3.4275	0.00278307	0.00126053	0.0469265	0.03295
chr17	42474238	42474338	6611445	0	+	0.47	(0.44,0.476]	chr17	644092	29	INTRON	INTRON	ATP6V0A1	ENSG00000033627.17	ENST00000393829.6:ENST00000343619.9:ENST00000537728.5:ENST00000588901.5:ENST00000264649.10:ENST00000585525.5:ENST00000544137.5:ENST00000589727.5:ENST00000592324.1:ENST00000587375.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	179	2	2.08378	3.11446	4.14514	0.00185664	9.51742e-7	0.038962	5.54959e-4
chr9	131186218	131186316	4216252	0	+	0.377551	(0.35,0.378]	chr9	386631	20	EXON_MRNA	EXON_MRNA:INTRON	NUP214	ENSG00000126883.19	ENST00000695497.1:ENST00000695498.1:ENST00000695496.1:ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000525980.5:ENST00000526346.5:ENST00000531929.5:ENST00000651334.1:ENST00000524578.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	92	2	2.1686	3.114415	4.06023	0.0116706	6.28901e-5	0.0891208	0.00658818
chr1	89890531	89890631	160221	0	+	0.38	(0.378,0.408]	chr1	17285	435	INTRON	INTRON	LRRC8D	ENSG00000171492.14	ENST00000525774.5:ENST00000337338.9:ENST00000394593.7:ENST00000532201.5:ENST00000414841.1:ENST00000527156.1:ENST00000441269.2	protein_coding	protein_coding	protein_coding	protein_coding	2	55	2	2.9917	3.11439	3.23708	0.0068789	0.00365053	0.0749442	0.0535094
chr15	52029271	52029371	6029123	0	+	0.39	(0.378,0.408]	chr15	574427	10	INTRON	INTRON	MAPK6	ENSG00000069956.14	ENST00000560802.1:ENST00000691380.1:ENST00000558063.5:ENST00000560254.1:ENST00000681888.1:ENST00000261845.7:ENST00000680066.1:ENST00000680777.1:ENST00000558100.1:ENST00000680652.1:ENST00000558841.1:ENST00000558891.1:ENST00000560774.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	45	2	1.5653	3.11434	4.66338	0.043739	0.0103469	0.162255	0.0850389
chr1	42661687	42661782	83781	0	+	0.4	(0.378,0.408]	chr1	10976	4	INTRON	INTRON	PPIH	ENSG00000171960.12	ENST00000372550.6:ENST00000678038.1:ENST00000677900.1:ENST00000676675.1:ENST00000304979.8:ENST00000678193.1:ENST00000678803.1:ENST00000678333.1:ENST00000677926.1:ENST00000677307.1:ENST00000440068.6:ENST00000677356.1:ENST00000679245.1:ENST00000678308.1:ENST00000678076.1:ENST00000677312.1:ENST00000677219.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	32	2	1.81685	3.1142700000000003	4.41169	0.0597868	0.0199606	0.189982	0.109608
chr4	68324623	68324723	2154623	0	-	0.4	(0.378,0.408]	chr4	212244	4	SS3_PROX	SS3_PROX:INTRON	YTHDC1	ENSG00000083896.13	ENST00000344157.9:ENST00000355665.7:ENST00000579690.5:ENST00000506175.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	32	2	1.81685	3.1142700000000003	4.41169	0.0597868	0.0199606	0.189982	0.109608
chr16	47581646	47581745	6344515	0	+	0.393939	(0.378,0.408]	chr16	608903	9	INTRON	INTRON	PHKB	ENSG00000102893.17	ENST00000566044.5:ENST00000299167.12:ENST00000696809.1:ENST00000323584.10:ENST00000567402.5:ENST00000570047.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	72	2	2.82967	3.114195	3.39872	0.0019852	0.00189968	0.0404516	0.0402736
chr5	178625180	178625277	2779020	0	-	0.536082	(0.515,0.57]	chr5	262176	14	INTRON	INTRON	CLK4	ENSG00000113240.14	ENST00000520878.5:ENST00000316308.9:ENST00000522136.5:ENST00000521621.5:ENST00000519583.5:ENST00000520199.5:ENST00000520909.5:ENST00000520126.1:ENST00000522556.1:ENST00000520957.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	34	2	2.32967	3.114115	3.89856	0.0280943	0.0133671	0.137011	0.0946278
chr5	139565503	139565603	2500545	0	+	0.52	(0.515,0.57]	chr5	239026	27	INTRON	INTRON	UBE2D2	ENSG00000131508.16	ENST00000511725.5:ENST00000505007.5:ENST00000398733.8:ENST00000510470.1:ENST00000398734.8:ENST00000505548.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	91	2	2.25019	3.1140999999999996	3.97801	0.00169679	9.14583e-5	0.0381936	0.00850096
chr4	87088597	87088696	1995341	0	+	0.525253	(0.515,0.57]	chr4	199063	41	INTRON	INTRON	AFF1	ENSG00000172493.23	ENST00000395146.9:ENST00000507468.5:ENST00000674009.1:ENST00000503477.5:ENST00000544085.6:ENST00000307808.10:ENST00000511722.5:ENST00000514970.2	protein_coding	protein_coding	protein_coding	protein_coding	3	37	2	1.63184	3.11407	4.5963	0.0545832	0.00370287	0.165292	0.0561162
chr16	89407455	89407555	6542763	0	-	0.58	(0.57,1]	chr16	634254	33	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000647238.1:ENST00000644045.1:ENST00000643147.1:ENST00000644139.1:ENST00000568512.6:ENST00000566973.1:ENST00000562211.2:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	52	2	2.161	3.114	4.067	0.00462668	2.30559e-5	0.062717	0.00391568
chr4	88750837	88750937	2199881	0	-	0.48	(0.476,0.515]	chr4	215910	2	SS3_PROX	SS3_PROX:INTRON	FAM13A	ENSG00000138640.15	ENST00000395002.6:ENST00000264344.10:ENST00000511573.5:ENST00000503556.5:ENST00000511976.5:ENST00000508369.5:ENST00000513837.5:ENST00000504836.5:ENST00000507352.1:ENST00000515155.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	34	2	1.79693	3.11393	4.43093	0.0649782	0.00931369	0.179417	0.0855292
chr7	23416719	23416816	3503127	0	-	0.484536	(0.476,0.515]	chr7	326900	1	INTRON	INTRON	IGF2BP3	ENSG00000136231.14	ENST00000258729.8:ENST00000421467.6:ENST00000468263.5:ENST00000479504.5:ENST00000466809.6:ENST00000491719.5:ENST00000465058.5:ENST00000469723.5:ENST00000476938.5:ENST00000468005.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	34	2	1.79693	3.11393	4.43093	0.0649782	0.00931369	0.179417	0.0855292
chr7	23512194	23512293	3503753	0	-	0.484848	(0.476,0.515]	chr7	326946	43	INTRON	INTRON	TRA2A	ENSG00000164548.12	ENST00000297071.9:ENST00000392502.8:ENST00000538367.6:ENST00000621813.4:ENST00000494255.5:ENST00000474586.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	59	2	1.69758	3.1139050000000004	4.53023	0.0144542	0.0119748	0.105087	0.0899583
chr10	15841025	15841125	4564976	0	-	0.34	(0.32,0.35]	chr10	421245	2	SS5_PROX	SS5_PROX:INTRON	MINDY3	ENSG00000148481.14	ENST00000477891.1:ENST00000277632.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	61	2	2.68921	3.113875	3.53854	0.0230336	9.09596e-4	0.118056	0.0277043
chr21	22222412	22222512	7384592	0	+	0.33	(0.32,0.35]	chr21	752727	92	INTRON	INTRON	ENSG00000226043	ENSG00000226043.2	ENST00000667099.1:ENST00000654607.1:ENST00000444130.1	lncRNA	lncRNA	lncRNA	lncRNA	4	97	2	2.70967	3.113875	3.51808	0.00151238	0.00105927	0.0352794	0.0299929
chr3	177183487	177183587	1872309	0	-	0.47	(0.44,0.476]	chr3	187438	122	INTRON	INTRON	TBL1XR1	ENSG00000177565.18	ENST00000457928.7:ENST00000430069.5:ENST00000673974.1:ENST00000352800.10:ENST00000422442.6:ENST00000428970.5:ENST00000424913.5:ENST00000437738.5:ENST00000431421.5:ENST00000635794.1:ENST00000630796.2:ENST00000450267.5:ENST00000630833.2:ENST00000431674.5:ENST00000422066.5:ENST00000443315.5:ENST00000627825.2:ENST00000427349.5:ENST00000413084.5:ENST00000637137.1:ENST00000491623.2:ENST00000637544.1:ENST00000636187.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	112	2	2.88226	3.1138149999999998	3.34537	3.71378e-4	2.18713e-4	0.0173619	0.0135522
chr1	193243043	193243142	285844	0	+	0.525253	(0.515,0.57]	chr1	32861	48	INTRON	INTRON	CDC73	ENSG00000134371.14	ENST00000643006.1:ENST00000367435.5:ENST00000650197.1:ENST00000648071.1:ENST00000635846.1:ENST00000649613.1:ENST00000477868.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	60	2	2.73258	3.1137699999999997	3.49496	0.00260192	9.61701e-4	0.0470772	0.0282401
chr20	31713451	31713550	7325278	0	-	0.565657	(0.515,0.57]	chr20	745996	285	INTRON	INTRON	BCL2L1	ENSG00000171552.14	ENST00000376055.9:ENST00000376062.6:ENST00000307677.5:ENST00000420488.6:ENST00000439267.2:ENST00000678563.1:ENST00000456404.6:ENST00000676942.1:ENST00000676582.1:ENST00000434194.2:ENST00000677194.1:ENST00000678671.1:ENST00000677494.1:ENST00000422920.2:ENST00000450273.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	60	2	2.73258	3.1137699999999997	3.49496	0.00260192	9.61701e-4	0.0470772	0.0282401
chr12	122857749	122857838	5242110	0	+	0.438202	(0.408,0.44]	chr12	498041	7	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	HIP1R	ENSG00000130787.14	ENST00000535831.5:ENST00000253083.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	72	2	2.49983	3.11372	3.72761	0.00713527	4.662e-4	0.0756118	0.0199613
chr15	57990931	57991029	6186779	0	-	0.295918	(0.28,0.32]	chr15	589738	4	INTRON	INTRON	ALDH1A2	ENSG00000128918.15	ENST00000537372.5:ENST00000249750.9:ENST00000347587.7:ENST00000430119.6:ENST00000558231.5:ENST00000559517.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	65	2	2.91851	3.11372	3.30893	0.0130672	0.00260504	0.093385	0.0470772
chr17	66315716	66315816	6662428	0	+	0.53	(0.515,0.57]	chr17	650320	92	INTRON	INTRON	PRKCA	ENSG00000154229.12	ENST00000413366.8:ENST00000578063.5:ENST00000583361.1:ENST00000284384.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	40	2	1.62814	3.11364	4.59914	0.035203	0.00616166	0.150193	0.0676501
chr2	126667635	126667735	862124	0	+	0.59	(0.57,1]	chr2	96613	90	INTRON	INTRON	GYPC	ENSG00000136732.16	ENST00000459787.1:ENST00000259254.9:ENST00000409836.3:ENST00000356887.12	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	60	2	3.03019	3.11363	3.19707	2.16062e-4	1.05548e-4	0.0129138	0.00920724
chr2	84437508	84437606	1168614	0	-	0.428571	(0.408,0.44]	chr2	124421	10	INTRON	INTRON	SUCLG1	ENSG00000163541.12	ENST00000393868.7:ENST00000651342.1:ENST00000488234.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	86	2	2.93869	3.1136049999999997	3.28852	0.00287185	2.73901e-4	0.0474836	0.0147448
chr14	102628712	102628812	5822894	0	+	0.52	(0.515,0.57]	chr14	552490	350	INTRON	INTRON	RCOR1	ENSG00000089902.10	ENST00000262241.7	protein_coding	protein_coding	protein_coding	protein_coding	4	80	2	2.92045	3.1135450000000002	3.30664	0.00128922	1.4883e-4	0.0328334	0.0105921
chr7	133064347	133064447	3645712	0	-	0.38	(0.378,0.408]	chr7	338880	124	INTRON	INTRON	CHCHD3	ENSG00000106554.13	ENST00000262570.10:ENST00000448878.6:ENST00000423635.5:ENST00000481152.2:ENST00000457942.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	34	2	2.23831	3.1134899999999996	3.98867	0.0507	0.0179575	0.156383	0.114265
chr22	21769526	21769624	7560397	0	-	0.479592	(0.476,0.515]	chr22	773353	2	SS3_PROX	SS3_PROX:INTRON	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	4	89	2	3.10264	3.11346	3.12428	0.00543163	9.82343e-5	0.0645052	0.0083372
chr19	12539631	12539731	7139838	0	-	0.5	(0.476,0.515]	chr19	720329	68	INTRON	INTRON	ZNF564	ENSG00000249709.8	ENST00000339282.12:ENST00000427105.1:ENST00000596193.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	52	2	2.82673	3.1133800000000003	3.40003	0.0134403	0.00139193	0.0946278	0.0341261
chr9	127675106	127675204	4201845	0	+	0.459184	(0.44,0.476]	chr9	383722	13	INTRON	INTRON	STXBP1	ENSG00000136854.24	ENST00000637521.2:ENST00000636509.2:ENST00000626539.3:ENST00000635950.2:ENST00000636962.2:ENST00000637953.1:ENST00000637464.2:ENST00000637173.2:ENST00000637060.2:ENST00000373302.8:ENST00000373299.5:ENST00000650920.1:ENST00000647107.1:ENST00000626416.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	53	2	2.67572	3.1132	3.55068	0.0212064	7.06861e-4	0.113017	0.0241881
chr7	151502262	151502362	3674749	0	-	0.44	(0.408,0.44]	chr7	341207	37	INTRON	INTRON	RHEB	ENSG00000106615.10	ENST00000262187.10:ENST00000472642.5:ENST00000478470.5:ENST00000496004.5:ENST00000470370.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	129	2	2.97622	3.1131450000000003	3.25007	3.61891e-4	7.35724e-5	0.0176126	0.00714826
chr1	22509433	22509533	43525	0	+	0.51	(0.476,0.515]	chr1	5189	2	SS5_PROX	SS5_PROX:INTRON	ZBTB40	ENSG00000184677.18	ENST00000650433.1:ENST00000404138.5:ENST00000374651.8:ENST00000375647.5	protein_coding	protein_coding	protein_coding	protein_coding	2	52	2	3.07422	3.11312	3.15202	0.00506023	0.00455841	0.0646039	0.0595107
chr14	23318435	23318535	5656918	0	+	0.48	(0.476,0.515]	chr14	539442	68	INTRON	INTRON	BCL2L2-PABPN1	ENSG00000258643.6	ENST00000678502.1:ENST00000553781.5:ENST00000557008.2	protein_coding	protein_coding	protein_coding	protein_coding	2	52	2	3.07422	3.11312	3.15202	0.00506023	0.00455841	0.0646039	0.0595107
chr7	100080449	100080547	3585247	0	-	0.489796	(0.476,0.515]	chr7	334081	4	INTRON	INTRON	ZNF3	ENSG00000166526.18	ENST00000413658.6:ENST00000424697.5:ENST00000299667.9:ENST00000412947.6:ENST00000487620.1:ENST00000428683.5:ENST00000449785.5:ENST00000441298.5:ENST00000485892.5:ENST00000292393.9:ENST00000460331.5:ENST00000466121.1:ENST00000479192.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	52	2	3.07422	3.11312	3.15202	0.00506023	0.00455841	0.0646039	0.0595107
chrX	45032530	45032630	7650202	0	+	0.36	(0.35,0.378]	chrX	782757	114	INTRON	INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000675440.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000621147.5:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1:ENST00000675525.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	58	2	2.60341	3.1130649999999997	3.62272	0.0275785	5.64719e-4	0.123904	0.021704
chr19	8455974	8456074	7010874	0	+	0.37	(0.35,0.378]	chr19	696142	4	SS5_PROX	SS5_PROX:INTRON	HNRNPM	ENSG00000099783.12	ENST00000348943.7:ENST00000597813.5:ENST00000600092.5:ENST00000325495.9:ENST00000600806.5:ENST00000620401.4:ENST00000594907.5:ENST00000596984.5:ENST00000601645.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	76	2	3.05367	3.113055	3.17244	0.00487788	7.17897e-4	0.0607461	0.0244389
chr3	15841089	15841189	1624258	0	-	0.45	(0.44,0.476]	chr3	168034	264	INTRON	INTRON	ANKRD28	ENSG00000206560.12	ENST00000399451.6:ENST00000412318.5:ENST00000439830.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	95	2	2.44562	3.11304	3.78046	0.00135452	3.54249e-4	0.0339121	0.0174886
chr16	75372460	75372546	6528679	0	-	0.395349	(0.378,0.408]	chr16	632305	4	UTR3	UTR3:EXON_MRNA:INTRON	CFDP1	ENSG00000153774.9	ENST00000283882.4:ENST00000612761.1:ENST00000569341.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	54	2	3.05502	3.112955	3.17089	0.00689519	0.00357279	0.0717484	0.0548435
chr1	41176758	41176857	430171	0	-	0.59596	(0.57,1]	chr1	52248	139	INTRON	INTRON	SCMH1	ENSG00000010803.17	ENST00000695335.1:ENST00000372596.5:ENST00000372597.5:ENST00000337495.9:ENST00000695336.1	protein_coding	protein_coding	protein_coding	protein_coding	2	29	2	2.99729	3.1129249999999997	3.22856	0.00538023	0.00205928	0.0642754	0.0420839
chr1	77681587	77681686	493454	0	-	0.59596	(0.57,1]	chr1	58319	39	INTRON	INTRON	ZZZ3	ENSG00000036549.13	ENST00000370801.8:ENST00000370798.5:ENST00000433749.5:ENST00000414381.5:ENST00000463166.5:ENST00000469944.1:ENST00000458763.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	29	2	2.99729	3.1129249999999997	3.22856	0.00538023	0.00205928	0.0642754	0.0420839
chr17	82412030	82412128	6853115	0	-	0.591837	(0.57,1]	chr17	679247	1	INTRON	INTRON	OGFOD3	ENSG00000181396.13	ENST00000313056.10:ENST00000329197.9:ENST00000583897.5:ENST00000580445.5:ENST00000577495.5:ENST00000577606.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	29	2	2.99729	3.1129249999999997	3.22856	0.00538023	0.00205928	0.0642754	0.0420839
chr11	46547040	46547112	4946785	0	-	0.347222	(0.32,0.35]	chr11	463507	1	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	AMBRA1	ENSG00000110497.15	ENST00000683756.1:ENST00000534300.5:ENST00000533727.5:ENST00000314845.7:ENST00000458649.6:ENST00000528950.1:ENST00000531542.1:ENST00000524783.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	35	2	1.95271	3.1128549999999997	4.273	0.0431213	0.0368357	0.162255	0.138959
chr12	132802469	132802566	5449947	0	-	0.608247	(0.57,1]	chr12	522069	1	INTRON	INTRON	GOLGA3	ENSG00000090615.16	ENST00000204726.9:ENST00000450791.8:ENST00000693666.1:ENST00000688114.1:ENST00000687190.1:ENST00000690511.1:ENST00000685283.1:ENST00000691696.1:ENST00000691636.1:ENST00000690897.1:ENST00000690465.1:ENST00000456883.7:ENST00000692253.1:ENST00000687502.1:ENST00000688772.1:ENST00000687479.1:ENST00000690709.1:ENST00000545875.4:ENST00000688251.1:ENST00000690573.1:ENST00000685195.1:ENST00000686425.1:ENST00000693437.1:ENST00000692831.1:ENST00000688068.1:ENST00000692951.1:ENST00000689441.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	29	2	3.09313	3.112835	3.13254	0.00369015	0.00310655	0.0535094	0.0512344
chr11	70417223	70417323	4821811	0	+	0.42	(0.408,0.44]	chr11	449633	1	SS5_PROX	SS5_PROX:INTRON	CTTN	ENSG00000085733.16	ENST00000346329.7:ENST00000301843.13:ENST00000376561.7:ENST00000415461.2:ENST00000532334.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	85	2	2.39349	3.1128299999999998	3.83217	0.00467273	1.79883e-4	0.0600108	0.0116696
chr16	21961762	21961860	6319624	0	+	0.520408	(0.515,0.57]	chr16	604976	3	SS5_PROX	SS5_PROX:INTRON	UQCRC2	ENSG00000140740.11	ENST00000565464.5:ENST00000268379.9:ENST00000561553.5:ENST00000567757.1:ENST00000563898.5:ENST00000565331.5:ENST00000564095.5:ENST00000567597.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	87	2	2.59745	3.1128299999999998	3.62821	6.62645e-4	4.12866e-4	0.0234815	0.0181365
chr18	2671888	2671987	6865024	0	+	0.393939	(0.378,0.408]	chr18	679952	45	INTRON	INTRON	SMCHD1	ENSG00000101596.17	ENST00000320876.11:ENST00000688342.1:ENST00000684915.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	57	2	2.46373	3.11274	3.76175	0.0382831	2.68579e-4	0.141795	0.0145349
chr12	116230332	116230432	5425075	0	-	0.45	(0.44,0.476]	chr12	518271	492	INTRON	INTRON	MED13L	ENSG00000123066.9	ENST00000281928.9:ENST00000650226.1:ENST00000548743.2:ENST00000647567.1:ENST00000551197.2	protein_coding	protein_coding	protein_coding	protein_coding	7	157	2	2.81921	3.1127000000000002	3.40619	7.10539e-4	4.5072e-6	0.0243894	0.00143349
chr1	213203543	213203643	312233	0	+	0.28	[0,0.28]	chr1	35957	267	INTRON	INTRON	RPS6KC1	ENSG00000136643.12	ENST00000615329.4:ENST00000543354.5:ENST00000614059.4:ENST00000543470.5:ENST00000366960.8:ENST00000366959.4:ENST00000490299.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	40	2	1.84147	3.11267	4.38387	0.0610416	0.0501911	0.193277	0.156383
chr3	134157781	134157873	1822715	0	-	0.23913	[0,0.28]	chr3	183403	8	UTR3	UTR3:EXON_MRNA:INTRON	RYK	ENSG00000163785.13	ENST00000484106.3:ENST00000623711.4:ENST00000460933.5:ENST00000620660.4:ENST00000473208.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	40	2	1.84147	3.11267	4.38387	0.0610416	0.0501911	0.193277	0.156383
chr9	121186752	121186852	4336258	0	-	0.25	[0,0.28]	chr9	398439	4	SS5_PROX	SS5_PROX:INTRON	RAB14	ENSG00000119396.11	ENST00000373840.9:ENST00000451303.1	protein_coding	protein_coding	protein_coding	protein_coding	2	40	2	1.84147	3.11267	4.38387	0.0610416	0.0501911	0.193277	0.156383
chr19	19392219	19392318	7035210	0	+	0.50505	(0.476,0.515]	chr19	701429	57	INTRON	INTRON	GATAD2A	ENSG00000167491.18	ENST00000494516.6:ENST00000360315.7:ENST00000609040.5:ENST00000417582.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	41	2	1.52615	3.112665	4.69918	0.0739267	0.00400966	0.190914	0.057767
chr2	151825781	151825881	1243716	0	-	0.41	(0.408,0.44]	chr2	132064	102	INTRON	INTRON	ARL5A:ENSG00000283228	ENSG00000162980.17:ENSG00000283228.1	ENST00000446896.7:ENST00000295087.13:ENST00000636024.1:ENST00000637224.1:ENST00000458140.6:ENST00000428992.2:ENST00000637559.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	46	2	1.79818	3.112655	4.42713	0.020428	0.0173083	0.122109	0.104099
chr7	148843876	148843976	3670356	0	-	0.41	(0.408,0.44]	chr7	340616	65	INTRON	INTRON	EZH2	ENSG00000106462.12	ENST00000683292.1:ENST00000320356.7:ENST00000492143.5:ENST00000478654.5:ENST00000350995.6:ENST00000460911.5:ENST00000683744.1:ENST00000682317.1:ENST00000682263.1:ENST00000684300.1:ENST00000476773.5:ENST00000483967.5:ENST00000498186.5:ENST00000483012.1:ENST00000682401.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	46	2	1.79818	3.112655	4.42713	0.020428	0.0173083	0.122109	0.104099
chr2	152733352	152733448	894400	0	+	0.447917	(0.44,0.476]	chr2	99120	9	EXON_MRNA	EXON_MRNA:INTRON	ARL6IP6	ENSG00000177917.12	ENST00000690727.1:ENST00000685752.1:ENST00000688293.1:ENST00000686839.1:ENST00000689155.1:ENST00000691702.1:ENST00000691523.1:ENST00000688012.1:ENST00000687504.1:ENST00000455875.6:ENST00000692124.1:ENST00000693573.1:ENST00000692399.1:ENST00000425034.6:ENST00000686080.1:ENST00000326446.10:ENST00000463690.2:ENST00000688130.1:ENST00000495469.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	53	2	2.9586	3.112645	3.26669	0.00758318	0.00305435	0.0773151	0.0493883
chr6	17784381	17784472	3066482	0	-	0.43956	(0.408,0.44]	chr6	284941	3	INTRON	INTRON	KIF13A	ENSG00000137177.20	ENST00000378814.9:ENST00000502297.5:ENST00000259711.11:ENST00000378826.6:ENST00000378843.6:ENST00000636847.1:ENST00000358380.10:ENST00000506044.1	protein_coding	protein_coding	protein_coding	protein_coding	5	97	2	2.09818	3.1126400000000003	4.1271	0.00772939	3.62655e-5	0.0757122	0.00482747
chr2	99354747	99354847	834985	0	+	0.35	(0.32,0.35]	chr2	93660	168	INTRON	INTRON	EIF5B	ENSG00000158417.11	ENST00000617677.1:ENST00000289371.11	protein_coding	protein_coding	protein_coding	protein_coding	4	109	2	3.04809	3.112355	3.1766200000000002	0.00120984	4.35341e-4	0.0317954	0.0187673
chr16	81534884	81534984	6405900	0	+	0.4	(0.378,0.408]	chr16	615031	390	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6	protein_coding	protein_coding	protein_coding	protein_coding	5	123	2	2.53602	3.112295	3.68857	0.0020933	4.15084e-5	0.0424943	0.00546267
chr6	143197190	143197290	2976556	0	+	0.25	[0,0.28]	chr6	279161	67	INTRON	INTRON	AIG1	ENSG00000146416.19	ENST00000367601.8:ENST00000447498.5:ENST00000646199.1:ENST00000357847.9:ENST00000275235.8:ENST00000458219.1	protein_coding	protein_coding	protein_coding	protein_coding	2	78	2	2.80396	3.11228	3.4206	0.0161429	0.00322364	0.109464	0.0507087
chr18	9118825	9118925	6868757	0	+	0.36	(0.35,0.378]	chr18	680517	1	SS3_PROX	SS3_PROX:INTRON	NDUFV2	ENSG00000178127.13	ENST00000318388.11:ENST00000400033.1:ENST00000474350.5:ENST00000483511.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	12	258	2	2.97188	3.1122750000000003	3.25267	1.01332e-4	4.38567e-6	0.00906611	0.00140668
chr5	91379681	91379781	2674956	0	-	0.3	(0.28,0.32]	chr5	253118	4	SS5_PROX	SS5_PROX:INTRON	ARRDC3	ENSG00000113369.9	ENST00000265138.4:ENST00000514284.5:ENST00000508948.5:ENST00000503192.5:ENST00000507075.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	45	2	1.71442	3.112115	4.50981	0.0454351	0.0275554	0.164236	0.123904
chr17	27302713	27302806	6580620	0	+	0.387097	(0.378,0.408]	chr17	639611	4	EXON_MRNA	EXON_MRNA:INTRON	WSB1	ENSG00000109046.15	ENST00000581440.5:ENST00000578312.5:ENST00000583742.1:ENST00000467843.6:ENST00000579733.5:ENST00000583193.5:ENST00000262394.7:ENST00000427287.6:ENST00000581185.5:ENST00000581089.1:ENST00000348811.6:ENST00000582208.1:ENST00000584114.1:ENST00000487603.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	152	2	2.28899	3.11211	3.93523	3.29777e-4	1.93873e-4	0.0161352	0.0127226
chr7	5693874	5693974	3474074	0	-	0.3	(0.28,0.32]	chr7	324821	410	INTRON	INTRON	RNF216	ENSG00000011275.19	ENST00000425013.6:ENST00000389902.8:ENST00000389900.8:ENST00000484458.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	38	2	2.08149	3.111815	4.14214	0.0579756	0.031124	0.167723	0.143644
chr2	96889443	96889543	1182119	0	-	0.51	(0.476,0.515]	chr2	126720	106	INTRON	INTRON	FAM178B	ENSG00000168754.15	ENST00000393526.6:ENST00000490605.3:ENST00000470789.5:ENST00000494172.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	175	2	3.10982	3.1118	3.11378	5.43204e-5	3.20961e-5	0.00651041	0.00452256
chr20	41034845	41034945	7273566	0	+	0.48	(0.476,0.515]	chr20	739216	50	INTRON	INTRON	TOP1	ENSG00000198900.7	ENST00000361337.3:ENST00000681113.1:ENST00000681058.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	219	2	2.84894	3.111795	3.37465	2.32094e-4	8.89129e-7	0.0139633	5.37028e-4
chr4	32079070	32079170	1942239	0	+	0.58	(0.57,1]	chr4	194727	809	INTRON	INTRON	LINC02506	ENSG00000251129.3	ENST00000662669.1:ENST00000665582.2:ENST00000667252.2:ENST00000660373.2:ENST00000684849.1:ENST00000513211.2:ENST00000659613.1:ENST00000657576.1:ENST00000686730.1:ENST00000685407.1:ENST00000685455.1:ENST00000655951.1	lncRNA	lncRNA	lncRNA	lncRNA	5	59	2	2.96471	3.11177	3.25883	1.58729e-4	1.51392e-4	0.0112689	0.0108333
chrX	138926932	138927032	7900832	0	-	0.38	(0.378,0.408]	chrX	804239	619	INTRON	INTRON	FGF13	ENSG00000129682.16	ENST00000441825.8:ENST00000626909.2:ENST00000436198.5:ENST00000455663.5:ENST00000448673.1:ENST00000421460.1	protein_coding	protein_coding	protein_coding	protein_coding	5	99	2	2.54736	3.111725	3.67609	8.3709e-4	6.32264e-4	0.0263691	0.0231174
chr1	211275856	211275956	305865	0	+	0.28	[0,0.28]	chr1	35260	2	SS3_PROX	SS3_PROX:INTRON	RCOR3	ENSG00000117625.14	ENST00000534478.5:ENST00000533469.5:ENST00000367006.8:ENST00000419091.7:ENST00000452621.6:ENST00000528926.5:ENST00000529572.5:ENST00000367005.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	77	2	2.49527	3.11149	3.72771	0.0436497	5.87492e-4	0.14882	0.0220073
chr5	66003555	66003655	2371622	0	+	0.29	(0.28,0.32]	chr5	228504	83	INTRON	INTRON	ERBIN	ENSG00000112851.15	ENST00000380943.6:ENST00000416865.6:ENST00000380935.5:ENST00000284037.10:ENST00000380938.6:ENST00000511297.5:ENST00000506030.5:ENST00000508515.1	protein_coding	protein_coding	protein_coding	protein_coding	2	39	2	2.1895	3.111475	4.03345	0.0704058	0.0227063	0.184298	0.124921
chr6	13682801	13682901	3058935	0	-	0.3	(0.28,0.32]	chr6	284542	236	INTRON	INTRON	RANBP9	ENSG00000010017.13	ENST00000011619.6	protein_coding	protein_coding	protein_coding	protein_coding	2	39	2	2.1895	3.111475	4.03345	0.0704058	0.0227063	0.184298	0.124921
chr6	87696121	87696221	3152860	0	-	0.45	(0.44,0.476]	chr6	294114	140	INTRON	INTRON	AKIRIN2	ENSG00000135334.9	ENST00000257787.6	protein_coding	protein_coding	protein_coding	protein_coding	4	49	2	1.5191	3.111325	4.70355	0.0526241	0.00383786	0.160983	0.0562562
chr7	111326684	111326784	3621749	0	-	0.45	(0.44,0.476]	chr7	337093	3628	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	113	2	2.9098	3.111275	3.31275	4.57573e-4	1.73222e-4	0.0197167	0.0114086
chr20	49944316	49944413	7285726	0	+	0.474227	(0.44,0.476]	chr20	741192	5	EXON_MRNA	EXON_MRNA:INTRON	RNF114	ENSG00000124226.11	ENST00000623528.3:ENST00000622999.3:ENST00000244061.6:ENST00000625177.3:ENST00000623732.3:ENST00000622920.1:ENST00000624666.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	100	2	2.87022	3.1112450000000003	3.35227	0.0022005699999999998	1.38486e-4	0.0417893	0.0101334
chr2	105282818	105282917	1199978	0	-	0.373737	(0.35,0.378]	chr2	128270	17	INTRON	INTRON	TGFBRAP1	ENSG00000135966.13	ENST00000595531.5:ENST00000393359.7:ENST00000258449.2	protein_coding	protein_coding	protein_coding	protein_coding	3	76	2	2.48623	3.11116	3.73609	0.00938784	3.31057e-4	0.0817766	0.0161599
chr17	57109231	57109328	6632593	0	+	0.556701	(0.515,0.57]	chr17	647906	8	INTRON	INTRON	AKAP1	ENSG00000121057.13	ENST00000337714.8:ENST00000571629.5:ENST00000621116.4:ENST00000572557.5:ENST00000481416.5:ENST00000539273.5:ENST00000314126.4:ENST00000576295.5:ENST00000573326.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	45	2	2.96814	3.11113	3.25412	0.00756432	0.00224554	0.0749063	0.0435144
chr6	36859334	36859433	3089435	0	-	0.535354	(0.515,0.57]	chr6	289005	8	INTRON	INTRON	PPIL1	ENSG00000137168.8	ENST00000373699.6	protein_coding	protein_coding	protein_coding	protein_coding	2	45	2	2.96814	3.11113	3.25412	0.00756432	0.00224554	0.0749063	0.0435144
chr12	98599286	98599370	5199045	0	+	0.559524	(0.515,0.57]	chr12	491869	2	INTRON	INTRON	SLC25A3	ENSG00000075415.15	ENST00000401722.7:ENST00000188376.9:ENST00000551917.5:ENST00000546766.5:ENST00000228318.8:ENST00000552981.6:ENST00000551123.5:ENST00000549338.5:ENST00000548847.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	45	2	3.03037	3.111075	3.19178	0.00608732	0.00289534	0.0676501	0.0494641
chr17	46143626	46143726	6784372	0	-	0.54	(0.515,0.57]	chr17	669216	224	INTRON	INTRON	KANSL1	ENSG00000120071.15	ENST00000574590.6:ENST00000572904.6:ENST00000432791.7:ENST00000575318.6:ENST00000638275.1:ENST00000262419.10:ENST00000648792.1:ENST00000639531.1:ENST00000639150.1:ENST00000639853.1:ENST00000571698.2:ENST00000639375.1:ENST00000638269.1:ENST00000576248.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	45	2	3.03037	3.111075	3.19178	0.00608732	0.00289534	0.0676501	0.0494641
chr14	30957137	30957235	5857179	0	-	0.602041	(0.57,1]	chr14	556504	5	INTRON	INTRON	STRN3	ENSG00000196792.12	ENST00000355683.9:ENST00000357479.10:ENST00000555358.5:ENST00000555152.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	71	2	2.12821	3.110965	4.09372	0.00521663	3.50951e-7	0.0633615	3.00241e-4
chr8	129567025	129567125	4060957	0	-	0.29	(0.28,0.32]	chr8	369672	99	INTRON	INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1:ENST00000676273.1:ENST00000667643.1:ENST00000668791.1:ENST00000663716.1:ENST00000663572.1:ENST00000676148.1:ENST00000667962.1:ENST00000674877.1:ENST00000675316.1:ENST00000674656.1:ENST00000446592.7:ENST00000667341.1:ENST00000675186.1:ENST00000652971.1:ENST00000661447.1:ENST00000674863.1:ENST00000675498.1:ENST00000675527.1:ENST00000676108.1:ENST00000657647.1:ENST00000675589.1:ENST00000675913.1:ENST00000675109.1:ENST00000671632.1:ENST00000671311.1:ENST00000676099.1:ENST00000660652.1:ENST00000675522.1:ENST00000675044.1:ENST00000675435.1:ENST00000674639.1:ENST00000676069.1:ENST00000675532.1:ENST00000674762.1:ENST00000523151.6:ENST00000675948.1:ENST00000665364.1:ENST00000657251.1:ENST00000675166.1:ENST00000674883.1:ENST00000675867.1:ENST00000674580.1:ENST00000675393.1:ENST00000520048.1:ENST00000674906.1:ENST00000676030.1:ENST00000670588.1:ENST00000675072.1:ENST00000664936.1:ENST00000652914.1:ENST00000657069.1:ENST00000674882.1	lncRNA	lncRNA	lncRNA	lncRNA	8	158	2	1.88234	3.11096	4.33958	0.00604688	5.19581e-5	0.0700955	0.00627105
chr11	108063222	108063321	4856279	0	+	0.363636	(0.35,0.378]	chr11	452903	79	INTRON	INTRON	CUL5	ENSG00000166266.14	ENST00000393094.7:ENST00000531427.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	33	2	1.82887	3.1109500000000003	4.39303	0.0584878	0.0237246	0.189395	0.118716
chr16	88964268	88964368	6541170	0	-	0.58	(0.57,1]	chr16	634108	66	INTRON	INTRON	CBFA2T3	ENSG00000129993.15	ENST00000268679.9:ENST00000563640.1	protein_coding	protein_coding	protein_coding	protein_coding	7	80	2	2.92143	3.11095	3.30047	5.97965e-5	1.64629e-5	0.00679152	0.00306044
chr6	20536093	20536192	2828396	0	+	0.444444	(0.44,0.476]	chr6	265630	3	INTRON	INTRON	CDKAL1	ENSG00000145996.11	ENST00000274695.8:ENST00000613575.4	protein_coding	protein_coding	protein_coding	protein_coding	4	83	2	2.53696	3.1108450000000003	3.68473	0.00204135	5.47507e-4	0.041855	0.0215463
chr1	174465144	174465244	260183	0	+	0.35	(0.32,0.35]	chr1	30824	157	INTRON	INTRON	RABGAP1L	ENSG00000152061.24	ENST00000357444.10:ENST00000251507.8:ENST00000681986.1:ENST00000367690.5:ENST00000526253.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	29	2	2.30673	3.110795	3.91486	0.0584434	0.0450361	0.167723	0.163255
chr17	2462139	2462237	6705717	0	-	0.336735	(0.32,0.35]	chr17	656568	18	INTRON	INTRON	METTL16	ENSG00000127804.13	ENST00000263092.11:ENST00000571669.6:ENST00000576556.5:ENST00000574752.5:ENST00000571298.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	29	2	2.30673	3.110795	3.91486	0.0584434	0.0450361	0.167723	0.163255
chr19	46360464	46360563	7081449	0	+	0.333333	(0.32,0.35]	chr19	708528	61	INTRON	INTRON	PPP5C	ENSG00000011485.15	ENST00000012443.9:ENST00000478046.5:ENST00000391919.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	29	2	2.30673	3.110795	3.91486	0.0584434	0.0450361	0.167723	0.163255
chr3	197060198	197060298	1901081	0	-	0.34	(0.32,0.35]	chr3	190484	2	SS3_PROX	SS3_PROX:INTRON	DLG1	ENSG00000075711.21	ENST00000667157.1:ENST00000346964.6:ENST00000656428.1:ENST00000663148.1:ENST00000655488.1:ENST00000357674.9:ENST00000671185.1:ENST00000658701.1:ENST00000667104.1:ENST00000661336.1:ENST00000669565.1:ENST00000670455.1:ENST00000656087.1:ENST00000670366.1:ENST00000653583.1:ENST00000653795.1:ENST00000671246.1:ENST00000661453.1:ENST00000665728.1:ENST00000664564.1:ENST00000653331.1:ENST00000660432.1:ENST00000660898.1:ENST00000657381.1:ENST00000659221.1:ENST00000654737.1:ENST00000469371.5:ENST00000669332.1:ENST00000659716.1:ENST00000660553.1:ENST00000664991.1:ENST00000419354.5:ENST00000661440.1:ENST00000667971.1:ENST00000670935.1:ENST00000668578.1:ENST00000666007.1:ENST00000661229.1:ENST00000660237.1:ENST00000657098.1:ENST00000661013.1:ENST00000436682.6:ENST00000452595.5:ENST00000662727.1:ENST00000422288.6:ENST00000448528.6:ENST00000443183.5:ENST00000656944.1:ENST00000392382.6:ENST00000450955.5:ENST00000658155.1:ENST00000669714.1:ENST00000654733.1:ENST00000475394.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	29	2	2.30673	3.110795	3.91486	0.0584434	0.0450361	0.167723	0.163255
chr9	137562451	137562550	4377452	0	-	0.323232	(0.32,0.35]	chr9	403627	53	INTRON	INTRON	DPH7	ENSG00000148399.13	ENST00000277540.7:ENST00000479650.5:ENST00000467243.5:ENST00000497237.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	29	2	2.30673	3.110795	3.91486	0.0584434	0.0450361	0.167723	0.163255
chr6	7285522	7285622	3053102	0	-	0.55	(0.515,0.57]	chr6	283931	45	UTR3	UTR3:EXON_MRNA:INTRON	SSR1	ENSG00000124783.14	ENST00000474597.5:ENST00000650389.1:ENST00000475213.1:ENST00000244763.9	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	72	2	2.72642	3.11069	3.49496	9.61701e-4	7.31116e-4	0.0282401	0.0246497
chr3	100741655	100741755	1468267	0	+	0.45	(0.44,0.476]	chr3	153884	1	SS3_PROX	SS3_PROX:INTRON	TFG	ENSG00000114354.15	ENST00000675047.1:ENST00000490574.6:ENST00000675543.1:ENST00000676308.1:ENST00000675499.1:ENST00000674699.1:ENST00000418917.7:ENST00000675553.1:ENST00000620299.5:ENST00000675246.1:ENST00000675692.1:ENST00000676276.1:ENST00000676054.1:ENST00000675890.1:ENST00000675011.1:ENST00000675586.1:ENST00000674645.1:ENST00000675958.1:ENST00000674798.1:ENST00000676010.1:ENST00000675591.1:ENST00000675420.1:ENST00000674615.1:ENST00000676431.1:ENST00000674758.1:ENST00000240851.9:ENST00000675243.1:ENST00000676111.1:ENST00000476228.5:ENST00000463568.6:ENST00000676395.1:ENST00000487505.6:ENST00000615993.2:ENST00000676455.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	33	2	2.21079	3.1105849999999995	4.01038	0.0433743	0.0194581	0.148082	0.119831
chr5	141581714	141581814	2739804	0	-	0.45	(0.44,0.476]	chr5	258132	4	SS5_PROX	SS5_PROX:INTRON	DIAPH1	ENSG00000131504.18	ENST00000647433.1:ENST00000389054.8:ENST00000518047.5:ENST00000647330.1:ENST00000523100.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	33	2	2.21079	3.1105849999999995	4.01038	0.0433743	0.0194581	0.148082	0.119831
chr16	89413554	89413653	6542825	0	-	0.515152	(0.476,0.515]	chr16	634260	6	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000647238.1:ENST00000644045.1:ENST00000643147.1:ENST00000644139.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	169	2	2.90115	3.11055	3.31995	5.03736e-5	4.9394e-5	0.00608708	0.00582173
chr17	31880376	31880474	6752697	0	-	0.438776	(0.408,0.44]	chr17	663765	3	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	UTP6	ENSG00000108651.10	ENST00000261708.9:ENST00000477128.5:ENST00000583408.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	11	238	2	2.94937	3.110525	3.27168	6.8824e-5	1.83336e-6	0.00736572	8.22338e-4
chr2	197489632	197489729	1307061	0	-	0.42268	(0.408,0.44]	chr2	136771	5	EXON_MRNA	EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HSPD1	ENSG00000144381.18	ENST00000388968.8:ENST00000426480.2:ENST00000345042.6:ENST00000452200.6:ENST00000679291.1:ENST00000677403.1:ENST00000678621.1:ENST00000678545.1:ENST00000676933.1:ENST00000678170.1:ENST00000476746.6:ENST00000678969.1:ENST00000428204.6:ENST00000418022.2:ENST00000439605.2:ENST00000440114.2:ENST00000461097.2:ENST00000677792.1:ENST00000678761.1:ENST00000677913.1:ENST00000677454.1:ENST00000491249.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	72	2	2.85723	3.110505	3.36378	0.00211413	0.0016048	0.0415897	0.0367961
chr15	87660178	87660278	6256156	0	-	0.34	(0.32,0.35]	chr15	596826	1168	INTRON	INTRON	ENSG00000259560	ENSG00000259560.2	ENST00000665121.1:ENST00000560439.1	lncRNA	lncRNA	lncRNA	lncRNA	2	60	2	2.84812	3.11011	3.3721	0.0147575	0.00182912	0.0983813	0.0396683
chr1	231263640	231263736	337248	0	+	0.40625	(0.378,0.408]	chr1	39203	4	INTRON	INTRON	GNPAT	ENSG00000116906.13	ENST00000436239.5:ENST00000366647.9:ENST00000644483.1:ENST00000416000.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	73	2	2.70141	3.110005	3.5186	0.00411614	8.45009e-4	0.0564981	0.0263813
chr17	64501201	64501260	6815819	0	-	0.491525	(0.476,0.515]	chr17	673798	2	EXON_MRNA	EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DDX5	ENSG00000108654.16	ENST00000225792.10:ENST00000678890.1:ENST00000676601.1:ENST00000676575.1:ENST00000676969.1:ENST00000678810.1:ENST00000585317.2:ENST00000678110.1:ENST00000580026.6:ENST00000678757.1:ENST00000676581.1:ENST00000676785.1:ENST00000585111.2:ENST00000577922.6:ENST00000450599.7:ENST00000678814.1:ENST00000677726.1:ENST00000583212.2:ENST00000579461.2:ENST00000540698.6:ENST00000581230.5:ENST00000581693.5:ENST00000582326.2:ENST00000578491.2:ENST00000578804.5:ENST00000578758.5:ENST00000581237.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	196	2	3.05287	3.109985	3.1671	3.35433e-5	2.2846e-5	0.00488303	0.00373083
chr12	112225546	112225645	5416132	0	-	0.343434	(0.32,0.35]	chr12	517437	57	INTRON	INTRON	HECTD4	ENSG00000173064.14	ENST00000550722.5:ENST00000377560.9:ENST00000682272.1:ENST00000550968.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	185	2	2.75861	3.1098749999999997	3.46114	0.0012751	5.02368e-6	0.0326395	0.00152751
chr2	32562829	32562928	732922	0	+	0.30303	(0.28,0.32]	chr2	84648	130	INTRON	INTRON	BIRC6	ENSG00000115760.15	ENST00000421745.7:ENST00000471232.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	65	2	2.82769	3.109865	3.39204	0.0169391	0.00188405	0.103888	0.0402736
chr2	148690673	148690773	892212	0	+	0.49	(0.476,0.515]	chr2	98787	3	SS5_PROX	SS5_PROX:INTRON	EPC2	ENSG00000135999.12	ENST00000457184.5:ENST00000258484.11:ENST00000409654.5:ENST00000397424.2:ENST00000449013.1	protein_coding	protein_coding	protein_coding	protein_coding	4	84	2	2.13573	3.10982	4.08391	0.0119549	4.74551e-5	0.0899583	0.00562068
chr9	92254137	92254235	4286927	0	-	0.408163	(0.378,0.408]	chr9	394155	8	EXON_MRNA	EXON_MRNA:INTRON	IARS1	ENSG00000196305.19	ENST00000375643.7:ENST00000443024.7:ENST00000447699.7:ENST00000683537.1:ENST00000684726.1:ENST00000683192.1:ENST00000683565.1:ENST00000682756.1:ENST00000684542.1:ENST00000683793.1:ENST00000683817.1:ENST00000682141.1:ENST00000682893.1:ENST00000684557.1:ENST00000498025.2:ENST00000682156.1:ENST00000627121.3:ENST00000683469.1:ENST00000683495.1:ENST00000682578.1:ENST00000682533.1:ENST00000472894.2:ENST00000684757.1:ENST00000684445.1:ENST00000683376.1:ENST00000683679.1:ENST00000683119.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	209	2	2.87937	3.109785	3.3402	5.46679e-5	1.71849e-5	0.00651589	0.00315585
chr7	139386529	139386629	3437862	0	+	0.49	(0.476,0.515]	chr7	320340	100	INTRON	INTRON	LUC7L2:FMC1-LUC7L2	ENSG00000146963.18:ENSG00000269955.2	ENST00000541170.7:ENST00000541515.3:ENST00000608368.5:ENST00000619796.4:ENST00000354926.9:ENST00000456182.5:ENST00000263545.7:ENST00000463912.5:ENST00000498518.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	70	2	2.77151	3.109675	3.44784	0.00288481	0.00113238	0.0475859	0.0308465
chr17	60276763	60276863	6804715	0	-	0.34	(0.32,0.35]	chr17	672336	49	INTRON	INTRON	USP32	ENSG00000170832.13	ENST00000300896.9:ENST00000590133.5:ENST00000589335.5:ENST00000393003.7	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	2.4458	3.10962	3.77344	0.0596635	0.0425977	0.189982	0.148082
chr10	133461258	133461357	4540587	0	+	0.626263	(0.57,1]	chr10	419129	7	INTRON	INTRON	SCART1	ENSG00000214279.13	ENST00000482993.6:ENST00000463137.5:ENST00000640237.1:ENST00000488261.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	57	2	2.35463	3.109615	3.8646	8.71651e-4	8.0672e-5	0.0268326	0.00804467
chr7	129029856	129029956	3636330	0	-	0.56	(0.515,0.57]	chr7	338142	113	INTRON	INTRON	TNPO3	ENSG00000064419.14	ENST00000627585.2:ENST00000265388.10:ENST00000471234.5:ENST00000482320.5:ENST00000471166.1	protein_coding	protein_coding	protein_coding	protein_coding	2	46	2	2.68833	3.10959	3.53085	0.0184931	6.59951e-4	0.108861	0.0232396
chr7	143385615	143385712	3441546	0	+	0.391753	(0.378,0.408]	chr7	320976	10	INTRON	INTRON	ZYX	ENSG00000159840.16	ENST00000322764.10:ENST00000354434.8:ENST00000392910.6:ENST00000436448.1:ENST00000446634.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	150	2	2.97642	3.109525	3.24263	4.05005e-4	3.24602e-5	0.0185763	0.00454388
chr9	37121187	37121276	4117660	0	+	0.606742	(0.57,1]	chr9	375358	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000322831.6:ENST00000461038.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	59	2	2.81156	3.10931	3.40706	3.95149e-4	5.92509e-5	0.0185763	0.00631599
chr4	39711266	39711366	1953123	0	+	0.53	(0.515,0.57]	chr4	195630	125	INTRON	INTRON	UBE2K	ENSG00000078140.14	ENST00000510934.5:ENST00000261427.10:ENST00000438068.6:ENST00000513231.5:ENST00000503368.5:ENST00000445950.2:ENST00000510719.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	83	2	2.11946	3.1092750000000002	4.09909	0.00559899	4.72555e-5	0.0678837	0.00593159
chr16	23852262	23852362	6323921	0	+	0.29	(0.28,0.32]	chr16	605693	145	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000498058.1:ENST00000645517.1:ENST00000498739.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	120	2	2.38564	3.109235	3.83283	0.00230684	5.10252e-4	0.0440898	0.020816
chr14	30559309	30559405	5674386	0	+	0.677083	(0.57,1]	chr14	540495	1	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	G2E3	ENSG00000092140.16	ENST00000206595.11:ENST00000438909.6:ENST00000544007.5:ENST00000550944.5:ENST00000552488.1:ENST00000648008.1:ENST00000553504.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	38	2	2.6547	3.1091949999999997	3.56369	0.00346848	4.26536e-4	0.0539802	0.0189958
chr17	31951477	31951577	6595822	0	+	0.52	(0.515,0.57]	chr17	641554	34	INTRON	INTRON	SUZ12	ENSG00000178691.11	ENST00000322652.10:ENST00000580398.1	protein_coding	protein_coding	protein_coding	protein_coding	2	46	2	2.9114	3.109025	3.30665	0.00826019	0.00213226	0.0813266	0.041756
chr16	87866011	87866110	6539063	0	-	0.494949	(0.476,0.515]	chr16	633647	25	INTRON	INTRON	SLC7A5	ENSG00000103257.9	ENST00000261622.5	protein_coding	protein_coding	protein_coding	protein_coding	5	111	2	2.72421	3.1090099999999996	3.49381	0.00107964	6.39656e-5	0.0302522	0.00661396
chrX	47149093	47149193	7655116	0	+	0.4	(0.378,0.408]	chrX	783085	12	INTRON	INTRON	RBM10	ENSG00000182872.16	ENST00000377604.8:ENST00000345781.10:ENST00000628161.2:ENST00000329236.8	protein_coding	protein_coding	protein_coding	protein_coding	2	33	2	2.11103	3.1088199999999997	4.10661	0.0399023	0.0266911	0.143072	0.134419
chr7	45767478	45767575	3529424	0	-	0.298969	(0.28,0.32]	chr7	329290	13	INTRON	INTRON	SEPTIN7P2	ENSG00000214765.9	ENST00000338231.8:ENST00000688931.1:ENST00000429741.5:ENST00000689783.1:ENST00000693141.1:ENST00000684893.1:ENST00000690171.1:ENST00000428414.5:ENST00000686085.1:ENST00000686032.1:ENST00000691119.1:ENST00000688953.1:ENST00000690342.1:ENST00000690179.1:ENST00000413875.6:ENST00000689506.1:ENST00000691450.1:ENST00000687862.1:ENST00000686398.1:ENST00000450436.1	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript	4	118	2	2.89708	3.1088	3.32052	0.00257346	2.48191e-4	0.0451443	0.0139607
chr1	174263148	174263248	258152	0	+	0.61	(0.57,1]	chr1	30773	102	INTRON	INTRON	RABGAP1L	ENSG00000152061.24	ENST00000357444.10:ENST00000251507.8:ENST00000681986.1:ENST00000457696.1	protein_coding	protein_coding	protein_coding	protein_coding	2	21	2	1.77365	3.108655	4.44366	0.0670385	0.00210922	0.183051	0.0425419
chr12	50100327	50100422	5135696	0	+	0.610526	(0.57,1]	chr12	484305	15	UTR3	UTR3:EXON_MRNA	SMARCD1	ENSG00000066117.15	ENST00000381513.8:ENST00000394963.9	protein_coding	protein_coding	protein_coding	protein_coding	2	21	2	1.77365	3.108655	4.44366	0.0670385	0.00210922	0.183051	0.0425419
chr19	47626993	47627093	7085941	0	+	0.6	(0.57,1]	chr19	709045	190	INTRON	INTRON	ENSG00000268746	ENSG00000268746.1	ENST00000599924.1	lncRNA	lncRNA	lncRNA	lncRNA	2	21	2	1.77365	3.108655	4.44366	0.0670385	0.00210922	0.183051	0.0425419
chr17	1385836	1385936	6699465	0	-	0.53	(0.515,0.57]	chr17	655552	157	INTRON	INTRON	YWHAE	ENSG00000108953.17	ENST00000264335.13:ENST00000571732.5:ENST00000573026.1:ENST00000573196.5:ENST00000575977.1:ENST00000469398.5:ENST00000486241.1:ENST00000489287.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	201	2	2.96149	3.108565	3.25564	1.86225e-5	3.11021e-6	0.00351782	0.00114063
chrX	110052713	110052813	7700534	0	+	0.4	(0.378,0.408]	chrX	788130	482	INTRON	INTRON	TMEM164	ENSG00000157600.12	ENST00000372072.7:ENST00000471255.5:ENST00000372073.5:ENST00000372068.7:ENST00000288381.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	116	2	2.92764	3.108505	3.28937	3.2389e-4	3.01906e-4	0.0165891	0.0155054
chr17	81667007	81667107	6690897	0	+	0.64	(0.57,1]	chr17	653957	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	CCDC137	ENSG00000185298.13	ENST00000329214.13:ENST00000575223.5:ENST00000574107.1:ENST00000574200.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	21	2	1.9042	3.108485	4.31277	0.0476976	0.00346264	0.153019	0.0539802
chrX	44932284	44932384	7649193	0	+	0.66	(0.57,1]	chrX	782726	579	INTRON	INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000675440.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000621147.5:ENST00000475233.1:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	21	2	1.9042	3.108485	4.31277	0.0476976	0.00346264	0.153019	0.0539802
chr14	49785820	49785919	5886556	0	-	0.444444	(0.44,0.476]	chr14	558643	1	INTRON	INTRON	NEMF	ENSG00000165525.18	ENST00000298310.10:ENST00000556691.5:ENST00000556074.5:ENST00000556925.5:ENST00000554275.1:ENST00000555970.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	70	2	3.08877	3.10838	3.12799	0.0050635	5.52878e-4	0.0621733	0.021371
chr1	174500243	174500343	260534	0	+	0.45	(0.44,0.476]	chr1	30824	508	INTRON	INTRON	RABGAP1L	ENSG00000152061.24	ENST00000357444.10:ENST00000251507.8:ENST00000681986.1:ENST00000367690.5:ENST00000526253.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	26	2	2.38219	3.108295	3.8344	0.045456	0.041276	0.161534	0.149888
chr19	49926495	49926595	7202015	0	-	0.47	(0.44,0.476]	chr19	730674	75	INTRON	INTRON	NUP62	ENSG00000213024.12	ENST00000422090.2:ENST00000352066.8:ENST00000597723.5:ENST00000597029.5:ENST00000596217.1:ENST00000595463.5:ENST00000593652.5:ENST00000599567.5:ENST00000596437.5:ENST00000600583.5:ENST00000594673.5:ENST00000599788.1:ENST00000600935.1:ENST00000596680.5:ENST00000601665.5:ENST00000599560.5:ENST00000599186.5:ENST00000597814.1:ENST00000599830.1:ENST00000598301.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	26	2	2.38219	3.108295	3.8344	0.045456	0.041276	0.161534	0.149888
chr19	52673781	52673881	7206966	0	-	0.47	(0.44,0.476]	chr19	731412	2	SS5_PROX	SS5_PROX:INTRON	ZNF83:ENSG00000269825	ENSG00000167766.20:ENSG00000269825.2	ENST00000601257.5:ENST00000594682.6:ENST00000687234.1:ENST00000598536.5:ENST00000595171.5:ENST00000596440.5:ENST00000602232.5:ENST00000598322.2:ENST00000598190.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	26	2	2.38219	3.108295	3.8344	0.045456	0.041276	0.161534	0.149888
chr2	151467599	151467699	893813	0	+	0.47	(0.44,0.476]	chr2	99031	2	SS3_PROX	SS3_PROX:INTRON	RIF1	ENSG00000080345.18	ENST00000453091.6:ENST00000428287.6:ENST00000444746.7:ENST00000243326.9:ENST00000430328.6:ENST00000454583.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	26	2	2.38219	3.108295	3.8344	0.045456	0.041276	0.161534	0.149888
chr3	183788698	183788798	1581217	0	+	0.47	(0.44,0.476]	chr3	163132	20	INTRON	INTRON	YEATS2	ENSG00000163872.16	ENST00000305135.10:ENST00000432781.1	protein_coding	protein_coding	protein_coding	protein_coding	1	26	2	2.38219	3.108295	3.8344	0.045456	0.041276	0.161534	0.149888
chr6	20783063	20783163	2830875	0	+	0.46	(0.44,0.476]	chr6	265673	14	INTRON	INTRON	CDKAL1	ENSG00000145996.11	ENST00000274695.8:ENST00000378610.1	protein_coding	protein_coding	protein_coding	protein_coding	1	26	2	2.38219	3.108295	3.8344	0.045456	0.041276	0.161534	0.149888
chr8	99113223	99113319	3812262	0	+	0.46875	(0.44,0.476]	chr8	353092	2	EXON_LNCRNA	EXON_LNCRNA:INTRON	VPS13B	ENSG00000132549.20	ENST00000496144.5:ENST00000683334.1:ENST00000682853.1:ENST00000357162.7:ENST00000358544.7:ENST00000683619.1:ENST00000441350.2:ENST00000684269.1:ENST00000682806.1:ENST00000683869.1:ENST00000682153.1:ENST00000682358.1:ENST00000682145.1:ENST00000355155.6:ENST00000682234.1:ENST00000683486.1:ENST00000684308.1:ENST00000524330.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	26	2	2.38219	3.108295	3.8344	0.045456	0.041276	0.161534	0.149888
chr7	44016133	44016233	3527014	0	-	0.38	(0.378,0.408]	chr7	328874	3	SS5_PROX	SS5_PROX:INTRON	ENSG00000272655	ENSG00000272655.2	ENST00000326391.6:ENST00000418424.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	2	54	2	3.10274	3.10817	3.1136	0.00586642	0.00443339	0.0668095	0.061054
chr21	37082376	37082474	7404912	0	+	0.377551	(0.35,0.378]	chr21	754522	9	UTR5	UTR5:EXON_MRNA:INTRON	TTC3	ENSG00000182670.14	ENST00000492275.6:ENST00000418766.6:ENST00000485402.5:ENST00000450533.6:ENST00000438055.5:ENST00000696812.1:ENST00000696811.1:ENST00000463216.6:ENST00000481605.6:ENST00000540756.5:ENST00000494243.5:ENST00000399010.5:ENST00000411496.2:ENST00000399017.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	40	2	1.65083	3.108165	4.5655	0.0521072	0.0155464	0.177022	0.100909
chrX	24208634	24208716	7631602	0	+	0.426829	(0.408,0.44]	chrX	781577	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ZFX	ENSG00000005889.16	ENST00000539115.5:ENST00000379188.7:ENST00000304543.10:ENST00000379177.5:ENST00000459724.1:ENST00000338565.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	33	2	2.21238	3.1081149999999997	4.00385	0.0454568	0.0193525	0.149888	0.119831
chr9	137633913	137634013	4223621	0	+	0.52	(0.515,0.57]	chr9	388152	135	INTRON	INTRON	EHMT1	ENSG00000181090.21	ENST00000462484.5:ENST00000371394.6:ENST00000630754.2:ENST00000460843.6:ENST00000626216.2:ENST00000637593.1:ENST00000629335.2:ENST00000637335.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	116	2	1.60826	3.1079549999999996	4.60765	0.0118853	2.17887e-6	0.0962115	0.00102673
chr16	70667831	70667931	6512004	0	-	0.45	(0.44,0.476]	chr16	630830	19	INTRON	INTRON	MTSS2	ENSG00000132613.16	ENST00000338779.11	protein_coding	protein_coding	protein_coding	protein_coding	3	70	2	2.38519	3.107945	3.8307	0.012193	1.81621e-4	0.0910127	0.0117212
chr1	44961101	44961201	437538	0	-	0.47	(0.44,0.476]	chr1	52963	18	INTRON	INTRON	EIF2B3	ENSG00000070785.17	ENST00000620860.4:ENST00000360403.7:ENST00000372183.7:ENST00000480675.5:ENST00000477953.5:ENST00000372182.6:ENST00000487532.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	51	2	1.68545	3.107895	4.53034	0.0322071	0.00672609	0.132543	0.0738715
chr6	13288068	13288167	2821527	0	+	0.353535	(0.35,0.378]	chr6	264987	11	UTR3	UTR3:EXON_MRNA	PHACTR1	ENSG00000112137.19	ENST00000689548.1:ENST00000692995.1:ENST00000687600.1:ENST00000687557.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	104	2	2.95105	3.107845	3.26464	0.00115843	4.0384e-4	0.0313803	0.0185763
chr17	28330017	28330110	6743879	0	-	0.451613	(0.44,0.476]	chr17	662164	9	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	IFT20	ENSG00000109083.14	ENST00000588477.5:ENST00000395418.8:ENST00000579419.5:ENST00000357896.7:ENST00000578009.5:ENST00000585089.5:ENST00000585313.5:ENST00000578122.5:ENST00000578985.5:ENST00000582797.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	109	2	2.63341	3.1078	3.58219	8.57842e-4	2.47449e-4	0.0267428	0.013927
chr1	15666867	15666966	33989	0	+	0.444444	(0.44,0.476]	chr1	4139	53	UTR3	UTR3:EXON_MRNA	DDI2	ENSG00000197312.12	ENST00000480945.6	protein_coding	protein_coding	protein_coding	protein_coding	2	55	2	2.74372	3.10776	3.4718	0.0153007	0.00136358	0.108569	0.0336321
chr5	10291579	10291679	2567326	0	-	0.58	(0.57,1]	chr5	246101	4	INTRON	INTRON	CMBL	ENSG00000164237.9	ENST00000296658.4:ENST00000510532.5:ENST00000511963.5:ENST00000506821.1:ENST00000514202.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	59	2	2.85802	3.10769	3.35736	3.01883e-4	8.14057e-5	0.0160895	0.00755207
chr1	19166057	19166157	386359	0	-	0.33	(0.32,0.35]	chr1	45997	3	SS3_PROX	SS3_PROX:INTRON	UBR4	ENSG00000127481.15	ENST00000375254.8:ENST00000417040.1:ENST00000419533.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	48	2	1.45026	3.107635	4.76501	0.0622478	0.0114287	0.194723	0.0886611
chr2	130133853	130133952	863611	0	+	0.40404	(0.378,0.408]	chr2	96903	37	INTRON	INTRON	MED15P9	ENSG00000223760.4	ENST00000427638.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	4	86	2	2.60363	3.107605	3.61158	0.00153353	8.34292e-4	0.0361717	0.0266389
chr2	96856408	96856506	1181830	0	-	0.438776	(0.408,0.44]	chr2	126641	16	INTRON	INTRON	ANKRD39	ENSG00000213337.9	ENST00000443120.5:ENST00000393537.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	35	2	1.88062	3.10731	4.334	0.0534548	0.011982	0.162935	0.0962115
chr7	23182394	23182489	3289630	0	+	0.431579	(0.408,0.44]	chr7	305535	3	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	NUP42	ENSG00000136243.18	ENST00000485250.5:ENST00000438012.5:ENST00000410002.7:ENST00000497500.5:ENST00000258742.10:ENST00000487595.5:ENST00000413919.1:ENST00000437140.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	35	2	1.88062	3.10731	4.334	0.0534548	0.011982	0.162935	0.0962115
chr2	68189787	68189887	1145894	0	-	0.46	(0.44,0.476]	chr2	122389	7	INTRON	INTRON	PPP3R1	ENSG00000221823.11	ENST00000234310.8:ENST00000409752.5:ENST00000409377.1	protein_coding	protein_coding	protein_coding	protein_coding	2	52	2	2.80275	3.1072550000000003	3.41176	0.0146513	0.00130987	0.0982604	0.0333932
chr16	16607978	16608078	6311942	0	+	0.46	(0.44,0.476]	chr16	604098	1080	INTRON	INTRON	ENSG00000260126	ENSG00000260126.2	ENST00000567465.2	lncRNA	lncRNA	lncRNA	lncRNA	3	69	2	2.9044	3.107255	3.31011	0.00259023	0.00132926	0.0452934	0.0335085
chr22	41890949	41891049	7526591	0	+	0.46	(0.44,0.476]	chr22	769424	3	SS3_PROX	SS3_PROX:INTRON	SREBF2	ENSG00000198911.12	ENST00000612482.4:ENST00000361204.9:ENST00000424354.5:ENST00000491541.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	69	2	2.9044	3.107255	3.31011	0.00259023	0.00132926	0.0452934	0.0335085
chr1	179163677	179163777	592419	0	-	0.48	(0.476,0.515]	chr1	71074	207	INTRON	INTRON	ABL2	ENSG00000143322.21	ENST00000502732.6:ENST00000367623.8:ENST00000507173.5:ENST00000511413.5:ENST00000668691.1:ENST00000392043.4:ENST00000660584.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	69	2	2.96824	3.1071	3.24596	0.00322919	9.98194e-4	0.0507087	0.0290732
chr1	226063348	226063448	327771	0	+	0.37	(0.35,0.378]	chr1	37738	4	SS5_PROX	SS5_PROX:INTRON	H3-3A	ENSG00000163041.13	ENST00000366816.5:ENST00000366814.3:ENST00000366815.10:ENST00000653960.1:ENST00000655399.1:ENST00000667897.1:ENST00000656829.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	14	329	2	2.73737	3.107055	3.47674	1.08204e-4	2.81792e-7	0.00933548	2.63609e-4
chr8	67105368	67105468	3777047	0	+	0.41	(0.408,0.44]	chr8	350304	4	SS3_PROX	SS3_PROX:INTRON	CSPP1	ENSG00000104218.16	ENST00000676113.1:ENST00000675306.2:ENST00000678156.1:ENST00000262210.11:ENST00000678017.1:ENST00000675869.1:ENST00000678542.1:ENST00000677619.1:ENST00000676605.1:ENST00000676471.1:ENST00000677256.1:ENST00000676847.1:ENST00000677009.1:ENST00000675820.1:ENST00000676317.1:ENST00000677592.1:ENST00000676573.1:ENST00000678318.1:ENST00000677473.1:ENST00000674993.1:ENST00000678553.1:ENST00000678204.1:ENST00000679226.1:ENST00000676882.1:ENST00000675955.1:ENST00000678728.1:ENST00000677430.1:ENST00000677455.1:ENST00000678616.1:ENST00000678362.1:ENST00000679112.1:ENST00000678645.1:ENST00000676567.1:ENST00000677845.1:ENST00000519163.6:ENST00000676858.1:ENST00000678747.1:ENST00000678821.1:ENST00000678744.1:ENST00000519668.1:ENST00000676697.1:ENST00000678216.1:ENST00000677855.1:ENST00000676695.1:ENST00000677836.1:ENST00000677070.1:ENST00000678444.1:ENST00000676534.1:ENST00000678138.1:ENST00000678807.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	40	2	1.9831	3.10703	4.23096	0.0278028	0.018491	0.123904	0.116694
chr11	86006442	86006542	5014203	0	-	0.47	(0.44,0.476]	chr11	472970	26	INTRON	INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000630913.2:ENST00000528398.5:ENST00000356360.9:ENST00000534412.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	227	2	2.73192	3.10699	3.48206	2.03532e-5	1.8127e-5	0.00366606	0.00325466
chr2	151430801	151430900	893421	0	+	0.494949	(0.476,0.515]	chr2	98914	15	INTRON	INTRON	RIF1	ENSG00000080345.18	ENST00000453091.6:ENST00000428287.6:ENST00000444746.7:ENST00000243326.9:ENST00000414861.6:ENST00000430328.6	protein_coding	protein_coding	protein_coding	protein_coding	3	69	2	2.68023	3.106925	3.53362	0.00353671	0.00102391	0.0546236	0.029231300000000002
chr1	70416537	70416636	142988	0	+	0.454545	(0.44,0.476]	chr1	16065	1	INTRON	INTRON	CTH	ENSG00000116761.12	ENST00000411986.6:ENST00000370938.8:ENST00000464926.1:ENST00000346806.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	54	2	2.5364	3.1068949999999997	3.67739	0.0309324	3.8961e-4	0.13151	0.0177751
chr16	12763199	12763299	6447453	0	-	0.47	(0.44,0.476]	chr16	621153	578	INTRON	INTRON	CPPED1	ENSG00000103381.12	ENST00000381774.9:ENST00000433677.6:ENST00000261660.4	protein_coding	protein_coding	protein_coding	protein_coding	4	83	2	2.70421	3.1068749999999996	3.50954	0.00116647	9.23275e-4	0.0312127	0.0278392
chr2	10124117	10124216	690725	0	+	0.555556	(0.515,0.57]	chr2	81059	1	SS5_PROX	SS5_PROX:INTRON	RRM2	ENSG00000171848.16	ENST00000641198.1:ENST00000360566.6:ENST00000652660.1:ENST00000641498.1:ENST00000304567.10:ENST00000491447.1:ENST00000615152.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	149	2	2.87626	3.1068	3.33734	0.00136224	3.03437e-6	0.0339121	0.00122991
chr12	132790878	132790978	5449822	0	-	0.53	(0.515,0.57]	chr12	522035	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GOLGA3	ENSG00000090615.16	ENST00000204726.9:ENST00000450791.8:ENST00000693666.1:ENST00000688114.1:ENST00000687190.1:ENST00000690511.1:ENST00000685283.1:ENST00000691696.1:ENST00000691636.1:ENST00000690897.1:ENST00000690465.1:ENST00000456883.7:ENST00000692253.1:ENST00000687502.1:ENST00000688772.1:ENST00000687479.1:ENST00000690709.1:ENST00000545875.4:ENST00000688251.1:ENST00000690573.1:ENST00000685195.1:ENST00000686425.1:ENST00000693437.1:ENST00000692831.1:ENST00000688068.1:ENST00000692951.1:ENST00000689441.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	100	2	2.33338	3.106705	3.88003	6.41714e-4	1.52864e-4	0.0228958	0.0112857
chr17	80143009	80143104	6847004	0	-	0.284211	(0.28,0.32]	chr17	677698	8	INTRON	INTRON	EIF4A3	ENSG00000141543.12	ENST00000649764.2:ENST00000647795.1:ENST00000576547.2:ENST00000575957.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	94	2	2.28998	3.1066599999999998	3.92334	0.0166401	3.47778e-4	0.110511	0.017378
chr12	93473274	93473374	5189310	0	+	0.58	(0.57,1]	chr12	490834	23	INTRON	INTRON	MRPL42	ENSG00000198015.14	ENST00000549982.6:ENST00000552217.6:ENST00000393128.8:ENST00000552326.5:ENST00000358678.7:ENST00000547098.5:ENST00000551396.5:ENST00000549561.6:ENST00000548545.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	29	2	2.89463	3.10661	3.31859	0.00788262	0.00137292	0.076155	0.0340241
chr19	40358843	40358942	7068987	0	+	0.575758	(0.57,1]	chr19	706105	97	INTRON	INTRON	PLD3	ENSG00000105223.20	ENST00000599685.5:ENST00000600479.5:ENST00000392032.6:ENST00000598962.5:ENST00000409419.5:ENST00000409587.5:ENST00000602131.5:ENST00000594085.5:ENST00000409735.9:ENST00000356508.9:ENST00000600948.5:ENST00000594908.5:ENST00000596682.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	29	2	2.89463	3.10661	3.31859	0.00788262	0.00137292	0.076155	0.0340241
chr3	193622208	193622307	1592154	0	+	0.414141	(0.408,0.44]	chr3	164758	29	INTRON	INTRON	OPA1	ENSG00000198836.11	ENST00000361828.7:ENST00000361715.6:ENST00000361150.6:ENST00000361908.8:ENST00000361510.8:ENST00000642445.1:ENST00000646277.1:ENST00000644595.1:ENST00000643737.1:ENST00000644841.1:ENST00000392436.7:ENST00000646085.1:ENST00000643329.1:ENST00000646793.1:ENST00000392437.6:ENST00000645553.1:ENST00000642593.1:ENST00000644959.1:ENST00000642289.1:ENST00000646699.1:ENST00000644629.1:ENST00000434811.2:ENST00000497189.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	74	2	2.84077	3.106605	3.37244	0.0132196	1.2469e-4	0.0940535	0.00953295
chr2	190893552	190893652	959608	0	+	0.38	(0.378,0.408]	chr2	104160	117	INTRON	INTRON	GLS	ENSG00000115419.13	ENST00000320717.8:ENST00000338435.8:ENST00000479552.1:ENST00000496170.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	32	2	1.89621	3.1066	4.31699	0.0488044	0.0250408	0.173377	0.12011
chr20	57396130	57396230	7288818	0	+	0.4	(0.378,0.408]	chr20	741605	24	INTRON	INTRON	RBM38	ENSG00000132819.17	ENST00000356208.10:ENST00000440234.6:ENST00000342690.4:ENST00000344785.10:ENST00000371219.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	32	2	1.89621	3.1066	4.31699	0.0488044	0.0250408	0.173377	0.12011
chr3	37171066	37171166	1656583	0	-	0.39	(0.378,0.408]	chr3	170024	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	LRRFIP2	ENSG00000093167.18	ENST00000336686.9:ENST00000354379.8:ENST00000421276.6:ENST00000396428.6:ENST00000440230.5:ENST00000416425.5:ENST00000461672.5:ENST00000438374.5:ENST00000452742.5:ENST00000436858.5:ENST00000434749.5:ENST00000482466.5:ENST00000490597.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	32	2	1.89621	3.1066	4.31699	0.0488044	0.0250408	0.173377	0.12011
chr18	46093465	46093565	6965453	0	-	0.46	(0.44,0.476]	chr18	689408	1	SS3_PROX	SS3_PROX:INTRON	ATP5F1A	ENSG00000152234.16	ENST00000398752.11:ENST00000282050.6:ENST00000593152.6:ENST00000586592.5:ENST00000590665.5:ENST00000590156.5:ENST00000592364.5:ENST00000589252.5:ENST00000589869.5:ENST00000590406.5:ENST00000590324.5:ENST00000590448.5:ENST00000592989.1:ENST00000591981.5:ENST00000585650.1:ENST00000591267.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	134	2	3.0755	3.10648	3.13746	1.9693e-4	8.94727e-5	0.0128602	0.0079464
chr6	166945460	166945556	3264204	0	-	0.520833	(0.515,0.57]	chr6	303029	12	INTRON	INTRON	ENSG00000249141:RNASET2	ENSG00000249141.1:ENSG00000026297.17	ENST00000507747.1:ENST00000508775.6:ENST00000683770.1:ENST00000611959.2:ENST00000620173.5:ENST00000682774.1:ENST00000684236.1:ENST00000683968.1:ENST00000682498.1:ENST00000366855.10:ENST00000421787.5:ENST00000476238.6:ENST00000028008.9:ENST00000478180.6:ENST00000499370.6:ENST00000358165.7:ENST00000496851.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	14	243	2	2.8515	3.106475	3.36145	5.0812e-6	2.55971e-6	0.00154058	0.00112569
chr3	9997225	9997325	1362074	0	+	0.49	(0.476,0.515]	chr3	143402	30	INTRON	INTRON	EMC3-AS1	ENSG00000180385.9	ENST00000692142.1:ENST00000366264.6:ENST00000693066.1:ENST00000326237.3:ENST00000440568.1:ENST00000424904.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	2	53	2	2.87879	3.1064749999999997	3.33416	0.00999149	0.00230489	0.0879541	0.0428247
chr1	180741477	180741577	270691	0	+	0.48	(0.476,0.515]	chr1	31620	587	INTRON	INTRON	XPR1	ENSG00000143324.14	ENST00000367590.9:ENST00000367589.3	protein_coding	protein_coding	protein_coding	protein_coding	2	52	2	2.7646	3.10622	3.44784	0.0162075	0.00113238	0.101453	0.0308465
chr3	47688886	47688986	1684133	0	-	0.5	(0.476,0.515]	chr3	172047	1	SS5_PROX	SS5_PROX:INTRON	SMARCC1	ENSG00000173473.11	ENST00000254480.10:ENST00000425518.5:ENST00000462198.5:ENST00000485737.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	52	2	2.7646	3.10622	3.44784	0.0162075	0.00113238	0.101453	0.0308465
chr4	141329080	141329179	2250857	0	-	0.40404	(0.378,0.408]	chr4	219893	32	INTRON	INTRON	LINC02432	ENSG00000248810.3	ENST00000653420.1:ENST00000670611.1:ENST00000658372.2:ENST00000659781.1:ENST00000511213.2:ENST00000652978.1:ENST00000691538.1	lncRNA	lncRNA	lncRNA	lncRNA	3	41	2	1.99678	3.106205	4.21563	0.0315429	0.0177959	0.13151	0.113452
chr8	61712372	61712472	3959094	0	-	0.4	(0.378,0.408]	chr8	363195	227	INTRON	INTRON	ASPH	ENSG00000198363.18	ENST00000379454.9:ENST00000445642.6:ENST00000356457.9:ENST00000519234.5:ENST00000518068.5:ENST00000517856.5:ENST00000379449.10	protein_coding	protein_coding	protein_coding	protein_coding	3	41	2	1.99678	3.106205	4.21563	0.0315429	0.0177959	0.13151	0.113452
chr2	135536121	135536221	873999	0	+	0.45	(0.44,0.476]	chr2	97879	41	INTRON	INTRON	R3HDM1	ENSG00000048991.17	ENST00000483021.5:ENST00000463230.5:ENST00000683871.1:ENST00000409478.5:ENST00000264160.8:ENST00000438014.5:ENST00000488035.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	54	2	2.81896	3.10609	3.39322	0.0120766	0.00187283	0.0962311	0.0390476
chr7	22857665	22857764	3288720	0	+	0.464646	(0.44,0.476]	chr7	305434	7	EXON_LNCRNA	EXON_LNCRNA:INTRON	SNHG26	ENSG00000228649.10	ENST00000415611.8:ENST00000667557.1:ENST00000422542.4:ENST00000656301.1:ENST00000661147.1:ENST00000656687.2:ENST00000662021.1:ENST00000691516.1:ENST00000685098.1:ENST00000689892.1:ENST00000663057.1:ENST00000657608.1:ENST00000688000.1:ENST00000690219.1:ENST00000658124.1:ENST00000661582.1	lncRNA	lncRNA	lncRNA	lncRNA	2	54	2	2.81896	3.10609	3.39322	0.0120766	0.00187283	0.0962311	0.0390476
chr8	129494343	129494443	4060224	0	-	0.27	[0,0.28]	chr8	369637	4	SS5_PROX	SS5_PROX:INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1:ENST00000676273.1:ENST00000667643.1:ENST00000668791.1:ENST00000663716.1:ENST00000663572.1:ENST00000676148.1:ENST00000667962.1:ENST00000674877.1:ENST00000675316.1:ENST00000674656.1:ENST00000446592.7:ENST00000667341.1:ENST00000675186.1:ENST00000652971.1:ENST00000661447.1:ENST00000674863.1:ENST00000675498.1:ENST00000675527.1:ENST00000676108.1:ENST00000657647.1:ENST00000675589.1:ENST00000675913.1:ENST00000675109.1:ENST00000671632.1:ENST00000671311.1:ENST00000676099.1:ENST00000660652.1:ENST00000675522.1:ENST00000675183.1:ENST00000658861.1:ENST00000663991.1:ENST00000675044.1:ENST00000675435.1:ENST00000674639.1:ENST00000676069.1:ENST00000675532.1:ENST00000674762.1:ENST00000523151.6:ENST00000675948.1:ENST00000665364.1:ENST00000657251.1:ENST00000675166.1:ENST00000674883.1:ENST00000675867.1:ENST00000674580.1:ENST00000675393.1:ENST00000520048.1:ENST00000674906.1:ENST00000676030.1:ENST00000670588.1:ENST00000675072.1:ENST00000664936.1:ENST00000652914.1:ENST00000657069.1	lncRNA	lncRNA	lncRNA	lncRNA	18	565	2	2.90411	3.106055	3.308	5.65011e-5	4.09258e-6	0.00655354	0.00134339
chr4	78803777	78803877	1981659	0	+	0.38	(0.378,0.408]	chr4	198463	267	INTRON	INTRON	BMP2K	ENSG00000138756.19	ENST00000389010.7:ENST00000502613.3:ENST00000502871.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	72	2	2.70298	3.106025	3.50907	0.00325723	0.00127828	0.0524329	0.0326395
chrX	71569692	71569790	7680338	0	+	0.438776	(0.408,0.44]	chrX	786480	12	INTRON	INTRON	OGT	ENSG00000147162.14	ENST00000373719.8:ENST00000488174.5:ENST00000373701.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	70	2	2.53313	3.105995	3.67886	0.00739595	3.86173e-4	0.074277	0.017761
chr16	23920038	23920138	6324601	0	+	0.36	(0.35,0.378]	chr16	605701	263	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000498739.1	protein_coding	protein_coding	protein_coding	protein_coding	11	259	2	2.65365	3.1059799999999997	3.55831	2.59526e-4	7.04072e-7	0.0148796	4.65333e-4
chr1	225983801	225983901	646298	0	-	0.3	(0.28,0.32]	chr1	76574	12	UTR3	UTR3:EXON_MRNA	SDE2	ENSG00000143751.10	ENST00000272091.8	protein_coding	protein_coding	protein_coding	protein_coding	3	94	2	3.03731	3.1059200000000002	3.17453	0.00429297	0.0014867	0.0599065	0.035
chr5	160102053	160102153	2759626	0	-	0.46	(0.44,0.476]	chr5	260436	76	INTRON	INTRON	PWWP2A	ENSG00000170234.13	ENST00000456329.7:ENST00000523662.1:ENST00000307063.9:ENST00000520662.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	128	2	2.61012	3.10589	3.60166	5.86746e-4	5.68842e-5	0.0220073	0.00655354
chr2	171723820	171723920	918076	0	+	0.41	(0.408,0.44]	chr2	101116	80	INTRON	INTRON	DYNC1I2	ENSG00000077380.16	ENST00000340296.8:ENST00000452242.5:ENST00000397119.8:ENST00000410079.7:ENST00000438879.5:ENST00000508530.5:ENST00000409197.5:ENST00000456808.5:ENST00000409317.5:ENST00000409773.5:ENST00000409453.5:ENST00000445378.5:ENST00000435234.5:ENST00000425485.5:ENST00000423910.5:ENST00000422646.1:ENST00000482454.5:ENST00000470286.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	38	2	1.69566	3.1058500000000002	4.51604	0.0453922	0.0137419	0.164236	0.0949306
chr3	48555885	48555985	1688913	0	-	0.44	(0.408,0.44]	chr3	172588	4	SS5_PROX	SS5_PROX:INTRON	PFKFB4	ENSG00000114268.12	ENST00000232375.8:ENST00000490115.5:ENST00000383734.6:ENST00000416568.5:ENST00000417753.5:ENST00000445633.5:ENST00000452531.5:ENST00000412035.5:ENST00000496767.5:ENST00000422701.1:ENST00000467176.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	38	2	1.69566	3.1058500000000002	4.51604	0.0453922	0.0137419	0.164236	0.0949306
chr4	82862902	82862987	2179803	0	-	0.435294	(0.408,0.44]	chr4	214331	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SEC31A	ENSG00000138674.17	ENST00000395310.7:ENST00000513858.5:ENST00000348405.8:ENST00000448323.5:ENST00000311785.11:ENST00000509142.5:ENST00000443462.6:ENST00000500777.6:ENST00000505472.5:ENST00000355196.6:ENST00000508502.5:ENST00000264405.9:ENST00000505984.5:ENST00000508479.5:ENST00000507828.5:ENST00000512664.5:ENST00000510167.1	protein_coding	protein_coding	protein_coding	protein_coding	3	38	2	1.69566	3.1058500000000002	4.51604	0.0453922	0.0137419	0.164236	0.0949306
chr12	76044247	76044347	5369787	0	-	0.39	(0.378,0.408]	chr12	512241	78	UTR3	UTR3:EXON_MRNA	NAP1L1	ENSG00000187109.15	ENST00000618691.5	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	2.38873	3.105835	3.82294	0.0458857	0.044228	0.162255	0.149888
chr16	4875934	4876021	6283597	0	+	0.402299	(0.378,0.408]	chr16	601609	1	INTRON	INTRON	UBN1	ENSG00000118900.15	ENST00000262376.11:ENST00000590769.5:ENST00000396658.8:ENST00000589191.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	27	2	2.38873	3.105835	3.82294	0.0458857	0.044228	0.162255	0.149888
chr20	41526550	41526650	7343621	0	-	0.39	(0.378,0.408]	chr20	748545	112	INTRON	INTRON	CHD6	ENSG00000124177.16	ENST00000373233.8:ENST00000373222.3:ENST00000470470.1:ENST00000482596.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	27	2	2.38873	3.105835	3.82294	0.0458857	0.044228	0.162255	0.149888
chr20	49246776	49246874	7352474	0	-	0.397959	(0.378,0.408]	chr20	749717	10	UTR3	UTR3:EXON_MRNA:INTRON	ZNFX1	ENSG00000124201.15	ENST00000371754.8:ENST00000371752.5:ENST00000396105.6	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	2.38873	3.105835	3.82294	0.0458857	0.044228	0.162255	0.149888
chr9	77771563	77771663	4269342	0	-	0.39	(0.378,0.408]	chr9	392856	425	INTRON	INTRON	GNAQ	ENSG00000156052.11	ENST00000286548.9	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	2.38873	3.105835	3.82294	0.0458857	0.044228	0.162255	0.149888
chr17	32378893	32378993	6598284	0	+	0.37	(0.35,0.378]	chr17	641948	56	UTR3	UTR3:EXON_MRNA	ZNF207	ENSG00000010244.19	ENST00000394670.9:ENST00000577908.5:ENST00000581531.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	13	260	2	2.59018	3.1057300000000003	3.62128	4.26087e-5	1.3164e-5	0.00528504	0.00287024
chr4	70825925	70826024	2155678	0	-	0.393939	(0.378,0.408]	chr4	212369	6	EXON_MRNA	EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GRSF1	ENSG00000132463.15	ENST00000254799.11:ENST00000505068.5:ENST00000499044.6:ENST00000502323.5:ENST00000514161.5:ENST00000506453.1:ENST00000508091.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	139	2	2.91352	3.105715	3.29791	4.99779e-4	3.60429e-5	0.0206993	0.00481059
chr7	128088413	128088509	3406800	0	+	0.395833	(0.378,0.408]	chr7	318231	10	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000489417.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	110	2	2.44367	3.105705	3.76774	7.28566e-4	4.21442e-4	0.0245975	0.0189827
chr16	406492	406588	6272131	0	+	0.5625	(0.515,0.57]	chr16	598517	2	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NME4:DECR2	ENSG00000103202.13:ENSG00000242612.7	ENST00000444498.5:ENST00000627716.2:ENST00000424398.6:ENST00000633923.1:ENST00000219481.10:ENST00000631605.1:ENST00000439661.5:ENST00000437024.5:ENST00000633348.1:ENST00000445291.5:ENST00000633025.1:ENST00000461802.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	62	2	2.9572600000000002	3.10569	3.25412	0.00224554	0.00108918	0.0435144	0.0303873
chr16	21440147	21440247	6460716	0	-	0.52	(0.515,0.57]	chr16	623223	1	SS5_PROX	SS5_PROX:INTRON	NPIPB3	ENSG00000169246.16	ENST00000521589.5:ENST00000545358.5:ENST00000543368.1:ENST00000544154.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	72	2	2.36534	3.105585	3.84583	0.00404547	1.82082e-4	0.0578376	0.0122264
chr2	8683684	8683781	688541	0	+	0.319588	(0.28,0.32]	chr2	80696	1	UTR3	UTR3:EXON_MRNA	ID2	ENSG00000115738.10	ENST00000234091.8:ENST00000396290.2:ENST00000472142.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	49	2	2.06884	3.10549	4.14214	0.0579756	0.0152581	0.167723	0.108569
chr1	112663076	112663176	186770	0	+	0.53	(0.515,0.57]	chr1	20673	29	INTRON	INTRON	CAPZA1	ENSG00000116489.13	ENST00000476936.5:ENST00000263168.4:ENST00000498626.1:ENST00000466066.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	109	2	2.54655	3.105445	3.66434	8.595e-4	1.71942e-5	0.0267428	0.00315585
chr1	10262070	10262170	21170	0	+	0.44	(0.408,0.44]	chr1	2063	1	SS5_PROX	SS5_PROX:INTRON	KIF1B	ENSG00000054523.20	ENST00000676179.1:ENST00000377093.9:ENST00000696500.1:ENST00000696501.1:ENST00000263934.10:ENST00000696502.1:ENST00000696503.1:ENST00000696504.1:ENST00000377086.5:ENST00000377083.5:ENST00000377081.5:ENST00000620295.2:ENST00000622724.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	52	2	2.89795	3.10526	3.31257	0.0110735	0.00198621	0.0873897	0.0411469
chr15	64565041	64565141	6045134	0	+	0.42	(0.408,0.44]	chr15	575696	621	INTRON	INTRON	ZNF609	ENSG00000180357.10	ENST00000326648.5:ENST00000558680.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	52	2	2.89795	3.10526	3.31257	0.0110735	0.00198621	0.0873897	0.0411469
chr16	7994068	7994167	6440449	0	-	0.414141	(0.408,0.44]	chr16	620345	158	INTRON	INTRON	ENSG00000260289	ENSG00000260289.2	ENST00000670665.1:ENST00000654046.1:ENST00000567103.2	lncRNA	lncRNA	lncRNA	lncRNA	2	52	2	3.00595	3.1051599999999997	3.20437	0.00781452	0.00306596	0.0759016	0.0509893
chr15	28284887	28284987	6123690	0	-	0.33	(0.32,0.35]	chr15	583388	42	INTRON	INTRON	HERC2	ENSG00000128731.18	ENST00000261609.13:ENST00000564734.5:ENST00000564383.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	80	2	2.89475	3.10504	3.31533	0.00323121	0.00160352	0.0507087	0.0367961
chr22	45334656	45334752	7530397	0	+	0.53125	(0.515,0.57]	chr22	769981	16	INTRON	INTRON	FAM118A	ENSG00000100376.12	ENST00000216214.7:ENST00000441876.7:ENST00000487732.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	38	2	1.811	3.105	4.399	0.0325989	0.00708863	0.133687	0.0754923
chr4	2415897	2415997	2099705	0	-	0.52	(0.515,0.57]	chr4	207738	94	INTRON	INTRON	ZFYVE28	ENSG00000159733.14	ENST00000290974.7:ENST00000511071.5:ENST00000509171.5:ENST00000503000.1	protein_coding	protein_coding	protein_coding	protein_coding	3	38	2	1.811	3.105	4.399	0.0325989	0.00708863	0.133687	0.0754923
chr8	123074029	123074128	3850239	0	+	0.555556	(0.515,0.57]	chr8	354655	2	INTRON	INTRON	TBC1D31	ENSG00000156787.17	ENST00000520368.5:ENST00000519418.5:ENST00000287380.6:ENST00000522420.5:ENST00000327098.9:ENST00000518099.5:ENST00000521676.5:ENST00000524307.5:ENST00000522276.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	123	2	2.92849	3.10497	3.28145	2.1933e-4	3.1416e-5	0.0135522	0.00449379
chr2	20305977	20306077	1076326	0	-	0.56	(0.515,0.57]	chr2	114994	79	INTRON	INTRON	PUM2	ENSG00000055917.16	ENST00000338086.9:ENST00000361078.7:ENST00000440577.5	protein_coding	protein_coding	protein_coding	protein_coding	3	63	2	2.90311	3.104875	3.30664	0.0094233	1.4883e-4	0.0817766	0.0105921
chr1	35018110	35018206	420274	0	-	0.447917	(0.44,0.476]	chr1	50608	10	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	ENSG00000271741:ZMYM6	ENSG00000271741.1:ENSG00000163867.17	ENST00000487874.1:ENST00000357182.9:ENST00000493328.5:ENST00000415531.5:ENST00000317538.9:ENST00000460607.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	69	2	2.73781	3.104805	3.4718	0.00276493	0.00136358	0.04867	0.0336321
chr11	126277151	126277232	4884323	0	+	0.444444	(0.44,0.476]	chr11	456750	2	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	FOXRED1	ENSG00000110074.12	ENST00000689283.1:ENST00000688927.1:ENST00000532125.2:ENST00000692336.1:ENST00000686888.1:ENST00000685857.1:ENST00000525083.6:ENST00000685765.1:ENST00000688588.1:ENST00000685601.1:ENST00000685484.1:ENST00000533839.6:ENST00000690512.1:ENST00000534011.6:ENST00000263578.10:ENST00000689477.1:ENST00000689765.1:ENST00000692039.1:ENST00000525770.5:ENST00000685844.1:ENST00000527004.5:ENST00000693133.1:ENST00000686242.1:ENST00000687699.1:ENST00000532101.6:ENST00000687786.1:ENST00000534315.5:ENST00000688100.1:ENST00000530642.1:ENST00000532590.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	69	2	2.73781	3.104805	3.4718	0.00276493	0.00136358	0.04867	0.0336321
chr6	136286742	136286841	3231097	0	-	0.535354	(0.515,0.57]	chr6	300408	37	INTRON	INTRON	BCLAF1	ENSG00000029363.17	ENST00000640069.1:ENST00000531224.6:ENST00000353331.8:ENST00000527536.5:ENST00000527613.5:ENST00000530767.5:ENST00000527759.5:ENST00000534269.5:ENST00000532384.5:ENST00000530429.5:ENST00000628517.2:ENST00000529826.5:ENST00000528229.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	123	2	2.34011	3.1047700000000003	3.86943	0.00106662	7.03652e-6	0.0300133	0.00198457
chr1	77738964	77739064	493935	0	-	0.33	(0.32,0.35]	chr1	58435	3	SS5_PROX	SS5_PROX:INTRON	USP33	ENSG00000077254.14	ENST00000370794.7:ENST00000370793.5:ENST00000357428.5:ENST00000370792.7:ENST00000524536.5	protein_coding	protein_coding	protein_coding	protein_coding	2	61	2	2.6321	3.104705	3.57731	0.0268	7.67492e-4	0.123349	0.0254532
chr1	244431251	244431350	672634	0	-	0.363636	(0.35,0.378]	chr1	79562	65	INTRON	INTRON	ADSS2	ENSG00000035687.10	ENST00000366535.4	protein_coding	protein_coding	protein_coding	protein_coding	2	56	2	2.94111	3.1045249999999998	3.26794	0.0104563	0.00257067	0.0855102	0.0466761
chr12	132734227	132734284	5449290	0	-	0.403509	(0.378,0.408]	chr12	521907	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ANKLE2	ENSG00000176915.15	ENST00000357997.10:ENST00000539605.5:ENST00000542374.5:ENST00000538766.1:ENST00000505031.6:ENST00000439231.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	36	2	1.88729	3.104515	4.32174	0.0532327	0.0132362	0.162538	0.0999551
chr1	45606820	45606910	93437	0	+	0.233333	[0,0.28]	chr1	12606	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NASP	ENSG00000132780.17	ENST00000437901.6:ENST00000537798.5:ENST00000437362.6:ENST00000350030.8:ENST00000527359.5:ENST00000453748.5:ENST00000525515.5:ENST00000527470.5:ENST00000529333.5:ENST00000528238.5:ENST00000534101.1:ENST00000470768.5:ENST00000372052.8:ENST00000351223.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	152	2	2.30522	3.10443	3.90364	0.00231754	5.45367e-4	0.044265	0.0215432
chr19	14529711	14529808	7024926	0	+	0.587629	(0.57,1]	chr19	698962	1	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	TECR	ENSG00000099797.15	ENST00000600076.5:ENST00000598298.5:ENST00000642961.1:ENST00000215567.10:ENST00000600083.5:ENST00000598987.5:ENST00000601652.5:ENST00000593637.5:ENST00000594807.5:ENST00000599646.1:ENST00000598333.5:ENST00000596953.5:ENST00000597607.5:ENST00000596164.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	51	2	2.81057	3.10443	3.39829	0.00169295	6.42666e-5	0.0381936	0.00711194
chr16	30699490	30699574	6338646	0	+	0.559524	(0.515,0.57]	chr16	607710	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SRCAP	ENSG00000080603.17	ENST00000411466.6:ENST00000262518.9	protein_coding	protein_coding	protein_coding	protein_coding	3	60	2	2.62817	3.104405	3.58064	0.004048	6.54693e-4	0.0578376	0.0233335
chr22	40350130	40350198	7519830	0	+	0.485294	(0.476,0.515]	chr22	768252	2	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	ADSL	ENSG00000239900.14	ENST00000623632.4:ENST00000679723.1:ENST00000623063.3:ENST00000637666.2:ENST00000680978.1:ENST00000625194.4:ENST00000681159.1:ENST00000342312.9:ENST00000636714.1:ENST00000680444.1:ENST00000480775.3:ENST00000624503.1:ENST00000466863.1:ENST00000637669.1:ENST00000216194.11:ENST00000675622.1:ENST00000679656.1:ENST00000636265.1:ENST00000623978.3:ENST00000477111.2:ENST00000623287.4:ENST00000679609.1:ENST00000624474.1:ENST00000680378.1:ENST00000636124.1:ENST00000638161.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	111	2	2.82251	3.1043849999999997	3.38626	6.78359e-4	1.1754e-4	0.023827	0.00930356
chr2	241681518	241681618	1349383	0	-	0.37	(0.35,0.378]	chr2	141800	2	SS5_PROX	SS5_PROX:INTRON	DTYMK	ENSG00000168393.13	ENST00000400770.6:ENST00000305784.7:ENST00000445261.5:ENST00000432348.5:ENST00000420144.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	220	2	2.49953	3.104365	3.7092	3.88883e-4	2.92274e-6	0.0183853	0.00109477
chr20	4014244	4014344	7309395	0	-	0.45	(0.44,0.476]	chr20	744300	395	INTRON	INTRON	RNF24	ENSG00000101236.17	ENST00000336095.10:ENST00000358395.11:ENST00000545616.2	protein_coding	protein_coding	protein_coding	protein_coding	5	95	2	2.55734	3.104345	3.65135	7.72402e-4	6.34922e-4	0.0255867	0.023163
chr4	23050647	23050746	1928631	0	+	0.343434	(0.32,0.35]	chr4	193953	89	INTRON	INTRON	ENSG00000248837	ENSG00000248837.7	ENST00000659942.1:ENST00000655325.1:ENST00000652324.1:ENST00000653008.1:ENST00000666412.1:ENST00000511453.5:ENST00000667179.1:ENST00000661585.1:ENST00000653872.1:ENST00000660370.1:ENST00000667156.1:ENST00000658109.1:ENST00000653188.1:ENST00000662431.1:ENST00000666579.1:ENST00000663348.1	lncRNA	lncRNA	lncRNA	lncRNA	3	81	2	2.63115	3.1042300000000003	3.57731	0.00608073	7.67492e-4	0.0676501	0.0254532
chr2	99337889	99337989	834816	0	+	0.53	(0.515,0.57]	chr2	93659	3	SS5_PROX	SS5_PROX:INTRON	EIF5B	ENSG00000158417.11	ENST00000617677.1:ENST00000289371.11	protein_coding	protein_coding	protein_coding	protein_coding	2	30	2	1.7074	3.1042099999999997	4.50102	0.0779432	0.00510768	0.196685	0.0646039
chr6	149569310	149569409	2995697	0	+	0.525253	(0.515,0.57]	chr6	280278	24	INTRON	INTRON	GINM1	ENSG00000055211.14	ENST00000650599.1:ENST00000367419.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	30	2	1.7074	3.1042099999999997	4.50102	0.0779432	0.00510768	0.196685	0.0646039
chr16	23558873	23558967	6323062	0	+	0.542553	(0.515,0.57]	chr16	605534	2	INTRON	INTRON	UBFD1	ENSG00000103353.16	ENST00000567212.5:ENST00000395878.8:ENST00000567264.1:ENST00000571064.5:ENST00000566669.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	39	2	1.91916	3.1041849999999998	4.28921	0.0231902	0.00990051	0.118148	0.0877296
chr13	97224731	97224831	5518422	0	+	0.3	(0.28,0.32]	chr13	527710	18	INTRON	INTRON	MBNL2	ENSG00000139793.20	ENST00000397601.5:ENST00000343600.9:ENST00000376673.8:ENST00000679496.1:ENST00000685165.1:ENST00000345429.10:ENST00000469707.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	37	2	1.96475	3.103975	4.2432	0.0479043	0.0428385	0.162255	0.153019
chr16	58593872	58593971	6496020	0	-	0.313131	(0.28,0.32]	chr16	628630	46	INTRON	INTRON	CNOT1	ENSG00000125107.19	ENST00000317147.10:ENST00000569240.5:ENST00000567188.5:ENST00000441024.6:ENST00000565605.5:ENST00000564557.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	37	2	1.96475	3.103975	4.2432	0.0479043	0.0428385	0.162255	0.153019
chr5	109406820	109406920	2702341	0	-	0.32	(0.28,0.32]	chr5	254366	157	INTRON	INTRON	PJA2	ENSG00000198961.10	ENST00000361189.7:ENST00000511624.1:ENST00000512822.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	37	2	1.96475	3.103975	4.2432	0.0479043	0.0428385	0.162255	0.153019
chr5	115907754	115907852	2455380	0	+	0.306122	(0.28,0.32]	chr5	235342	5	INTRON	INTRON	AP3S1	ENSG00000177879.17	ENST00000316788.12:ENST00000506430.2:ENST00000395548.6:ENST00000505423.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	37	2	1.96475	3.103975	4.2432	0.0479043	0.0428385	0.162255	0.153019
chr9	4801605	4801705	4094952	0	+	0.31	(0.28,0.32]	chr9	373155	80	INTRON	INTRON	RCL1	ENSG00000120158.12	ENST00000381750.9:ENST00000381732.3:ENST00000442869.5:ENST00000473230.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	37	2	1.96475	3.103975	4.2432	0.0479043	0.0428385	0.162255	0.153019
chr16	88780908	88781007	6540179	0	-	0.424242	(0.408,0.44]	chr16	633998	311	INTRON	INTRON	PIEZO1	ENSG00000103335.22	ENST00000301015.14	protein_coding	protein_coding	protein_coding	protein_coding	3	75	2	2.27464	3.103865	3.93309	0.0158016	1.78185e-4	0.109464	0.0121697
chr3	172776802	172776902	1563489	0	+	0.28	[0,0.28]	chr3	161783	24	INTRON	INTRON	ECT2	ENSG00000114346.14	ENST00000232458.9:ENST00000540509.5:ENST00000392692.8:ENST00000417960.5:ENST00000441497.6:ENST00000444250.1	protein_coding	protein_coding	protein_coding	protein_coding	2	41	2	2.00649	3.1037749999999997	4.20106	0.0695895	0.040391	0.184298	0.161534
chr4	47854858	47854958	2134708	0	-	0.21	[0,0.28]	chr4	210388	4	SS5_PROX	SS5_PROX:INTRON	NFXL1	ENSG00000170448.12	ENST00000329043.7:ENST00000464756.6:ENST00000381538.7:ENST00000507489.2:ENST00000502448.5:ENST00000507131.5:ENST00000508115.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	41	2	2.00649	3.1037749999999997	4.20106	0.0695895	0.040391	0.184298	0.161534
chr2	53873242	53873341	1119546	0	-	0.30303	(0.28,0.32]	chr2	119865	24	INTRON	INTRON	PSME4	ENSG00000068878.15	ENST00000404125.6:ENST00000389993.7:ENST00000476586.5:ENST00000466539.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	224	2	2.88888	3.10376	3.31864	8.6776e-4	6.91211e-6	0.0269488	0.00187033
chr5	43297827	43297908	2614274	0	-	0.271605	[0,0.28]	chr5	248512	3	SS5_PROX	SS5_PROX:INTRON	HMGCS1	ENSG00000112972.15	ENST00000325110.11:ENST00000433297.2	protein_coding	protein_coding	protein_coding	protein_coding	11	349	2	2.64413	3.1037150000000002	3.5633	6.5475e-4	2.72467e-6	0.0233335	0.00105686
chr21	29304104	29304203	7392403	0	+	0.434343	(0.408,0.44]	chr21	753179	29	INTRON	INTRON	BACH1	ENSG00000156273.16	ENST00000548219.5:ENST00000550131.5:ENST00000547141.5:ENST00000546469.5:ENST00000286800.8:ENST00000399921.5:ENST00000548467.1:ENST00000451655.5:ENST00000447177.5	protein_coding	protein_coding	protein_coding	protein_coding	3	70	2	2.6117	3.10367	3.59564	0.00555224	5.73354e-4	0.0648867	0.0217398
chr17	79088109	79088207	6682945	0	+	0.571429	(0.57,1]	chr17	652918	19	UTR3	UTR3:EXON_MRNA	ENGASE	ENSG00000167280.17	ENST00000579016.6:ENST00000300682.14	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	38	2	2.50742	3.1036400000000004	3.69986	0.00631173	1.9698e-4	0.0687526	0.0122531
chr6	18242908	18243008	3069028	0	-	0.42	(0.408,0.44]	chr6	285184	50	INTRON	INTRON	DEK	ENSG00000124795.17	ENST00000652689.1:ENST00000652292.1:ENST00000651624.1:ENST00000515770.2:ENST00000651992.1:ENST00000507591.2:ENST00000505224.5:ENST00000244776.11:ENST00000652576.1:ENST00000512145.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	39	2	1.8749	3.10364	4.33238	0.0264246	0.0218901	0.133676	0.11491
chr15	74935596	74935696	6222991	0	-	0.31	(0.28,0.32]	chr15	594284	60	INTRON	INTRON	COX5A	ENSG00000178741.12	ENST00000322347.11:ENST00000567270.5:ENST00000562233.5:ENST00000568783.5:ENST00000568517.1:ENST00000564811.1	protein_coding	protein_coding	protein_coding	protein_coding	2	66	2	2.97333	3.10344	3.23355	0.00857834	0.004869	0.083729	0.0607461
chr6	34603461	34603561	3085284	0	-	0.58	(0.57,1]	chr6	288673	125	INTRON	INTRON	ILRUN	ENSG00000196821.10	ENST00000374026.7:ENST00000374023.8:ENST00000374021.1	protein_coding	protein_coding	protein_coding	protein_coding	3	38	2	2.80351	3.10342	3.40333	0.00172505	9.20604e-4	0.0374701	0.0278392
chr12	49756055	49756155	5135082	0	+	0.5	(0.476,0.515]	chr12	484152	3	SS5_PROX	SS5_PROX:INTRON	TMBIM6	ENSG00000139644.13	ENST00000546796.5:ENST00000549966.5:ENST00000547832.5:ENST00000267115.10:ENST00000552699.5:ENST00000552635.5:ENST00000549385.5:ENST00000548201.5:ENST00000423828.5:ENST00000550445.5:ENST00000552370.5:ENST00000395006.8:ENST00000547798.1:ENST00000553022.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	39	2	1.86014	3.1033099999999996	4.34648	0.0277606	0.0193566	0.137011	0.108861
chr10	125090514	125090613	4713635	0	-	0.50505	(0.476,0.515]	chr10	434903	18	INTRON	INTRON	CTBP2	ENSG00000175029.17	ENST00000337195.9:ENST00000411419.6:ENST00000494626.6:ENST00000531469.5:ENST00000460976.5:ENST00000476817.1:ENST00000530884.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	92	2	3.03027	3.103275	3.17628	9.53446e-4	3.6008e-4	0.0282335	0.0169207
chr19	18571826	18571924	7033211	0	+	0.663265	(0.57,1]	chr19	700925	2	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	UBA52	ENSG00000221983.8	ENST00000596304.5:ENST00000430157.6:ENST00000596273.5:ENST00000442744.7:ENST00000598814.1:ENST00000595683.5:ENST00000599256.5:ENST00000595158.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	40	414	2	3.09226	3.10318	3.1141	2.17819e-8	1.21345e-9	4.87878e-5	8.76291e-6
chr9	131181988	131182087	4216209	0	+	0.363636	(0.35,0.378]	chr9	386630	32	INTRON	INTRON	NUP214	ENSG00000126883.19	ENST00000695497.1:ENST00000695498.1:ENST00000695496.1:ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000525980.5:ENST00000526346.5:ENST00000531929.5:ENST00000651334.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	75	2	2.76192	3.103135	3.44435	0.00265021	0.00179102	0.0474328	0.0380316
chr2	86623081	86623179	1171989	0	-	0.55102	(0.515,0.57]	chr2	125091	3	UTR5	UTR5:EXON_MRNA:SS3_PROX:INTRON	RNF103	ENSG00000239305.7	ENST00000237455.5:ENST00000477307.5:ENST00000472680.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	132	2	2.29944	3.10311	3.90678	9.49246e-4	3.38642e-6	0.0281755	0.00120054
chr1	111710945	111711043	186036	0	+	0.469388	(0.44,0.476]	chr1	20558	13	INTRON	INTRON	RAP1A	ENSG00000116473.15	ENST00000356415.5:ENST00000687939.1:ENST00000369709.4:ENST00000494982.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	32	2	2.0776	3.103015	4.12843	0.0337192	0.0292951	0.141862	0.134145
chr11	68442397	68442496	4817257	0	+	0.454545	(0.44,0.476]	chr11	448882	21	INTRON	INTRON	LRP5	ENSG00000162337.12	ENST00000294304.12:ENST00000529993.5:ENST00000529702.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	32	2	2.0776	3.103015	4.12843	0.0337192	0.0292951	0.141862	0.134145
chr20	58990540	58990632	7291334	0	+	0.445652	(0.44,0.476]	chr20	741897	7	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NELFCD	ENSG00000101158.15	ENST00000602795.6:ENST00000652272.2:ENST00000460601.5:ENST00000477741.5:ENST00000474543.5:ENST00000478389.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	32	2	2.0776	3.103015	4.12843	0.0337192	0.0292951	0.141862	0.134145
chr1	112541272	112541372	522788	0	-	0.38	(0.378,0.408]	chr1	61508	4	SS3_PROX	SS3_PROX:INTRON	ST7L	ENSG00000007341.19	ENST00000358039.9:ENST00000490715.5:ENST00000360743.8:ENST00000361846.7:ENST00000480988.5:ENST00000495109.2:ENST00000498197.1:ENST00000369669.5:ENST00000490067.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	87	2	2.33619	3.10285	3.86951	0.00607113	1.55755e-4	0.0676501	0.0106835
chr3	196755745	196755845	1595652	0	+	0.52	(0.515,0.57]	chr3	165300	152	INTRON	INTRON	PAK2	ENSG00000180370.10	ENST00000327134.7	protein_coding	protein_coding	protein_coding	protein_coding	2	45	2	3.05839	3.1028450000000003	3.1473	0.00485936	0.00397184	0.0640618	0.0549214
chr5	134173102	134173200	2726318	0	-	0.55102	(0.515,0.57]	chr5	256501	17	INTRON	INTRON	SKP1	ENSG00000113558.19	ENST00000353411.11:ENST00000522552.5:ENST00000521216.5:ENST00000517625.5:ENST00000523966.5:ENST00000522855.5:ENST00000328392.10:ENST00000519054.5:ENST00000519321.5:ENST00000520417.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	45	2	3.05839	3.1028450000000003	3.1473	0.00485936	0.00397184	0.0640618	0.0549214
chr8	94857078	94857178	3800471	0	+	0.52	(0.515,0.57]	chr8	352411	1	SS5_PROX	SS5_PROX:INTRON	INTS8	ENSG00000164941.14	ENST00000523731.6:ENST00000524333.5:ENST00000523321.5:ENST00000343161.8:ENST00000523206.5:ENST00000520526.5:ENST00000520845.5:ENST00000520315.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	45	2	3.05839	3.1028450000000003	3.1473	0.00485936	0.00397184	0.0640618	0.0549214
chrX	74269177	74269276	7841370	0	-	0.525253	(0.515,0.57]	chrX	799728	68	INTRON	INTRON	FTX	ENSG00000230590.12	ENST00000603672.5:ENST00000430772.6:ENST00000602776.6:ENST00000638681.1:ENST00000652319.1:ENST00000661133.1:ENST00000652071.1:ENST00000602812.6:ENST00000651703.1:ENST00000653018.1:ENST00000658448.1:ENST00000662240.1:ENST00000652527.1:ENST00000651451.1:ENST00000657611.1:ENST00000660481.1:ENST00000659574.1:ENST00000661084.1:ENST00000662494.1:ENST00000670936.1:ENST00000602420.6:ENST00000658203.1:ENST00000638985.1:ENST00000691187.1:ENST00000603037.2:ENST00000687056.1:ENST00000654870.2:ENST00000652540.1:ENST00000652331.2:ENST00000652013.1:ENST00000657070.1:ENST00000665069.1:ENST00000651936.1:ENST00000652496.1:ENST00000653874.2:ENST00000661335.1:ENST00000664123.1:ENST00000658439.1:ENST00000666535.1:ENST00000652970.1:ENST00000423992.3:ENST00000665313.2:ENST00000651140.1:ENST00000660100.1:ENST00000693483.1:ENST00000656041.1:ENST00000657327.1:ENST00000664343.1:ENST00000656977.1:ENST00000671343.1:ENST00000659407.1:ENST00000671067.1:ENST00000660829.1:ENST00000671385.1	lncRNA	lncRNA	lncRNA	lncRNA	7	121	2	2.43927	3.1027649999999998	3.76626	7.64103e-4	8.82219e-6	0.0253443	0.00213621
chr19	7928749	7928846	7130166	0	-	0.391753	(0.378,0.408]	chr19	718299	7	EXON_MRNA	EXON_MRNA:INTRON	TIMM44	ENSG00000104980.8	ENST00000270538.8:ENST00000599939.1:ENST00000595565.5:ENST00000595831.5:ENST00000598968.5:ENST00000599650.1:ENST00000598481.1:ENST00000595876.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	98	2	2.43777	3.102755	3.76774	0.00144299	4.21442e-4	0.034834	0.0189827
chr1	50593042	50593141	448574	0	-	0.292929	(0.28,0.32]	chr1	54213	79	INTRON	INTRON	FAF1	ENSG00000185104.21	ENST00000396153.7:ENST00000494400.5:ENST00000472808.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	42	2	1.86684	3.102735	4.33863	0.0605813	0.0207276	0.171122	0.122348
chr11	83160728	83160826	4840830	0	+	0.377551	(0.35,0.378]	chr11	451494	20	INTRON	INTRON	PCF11	ENSG00000165494.12	ENST00000298281.8:ENST00000530660.5:ENST00000690938.1:ENST00000530304.5:ENST00000533018.1	protein_coding	protein_coding	protein_coding	protein_coding	4	93	2	2.54394	3.102725	3.66151	0.0028214	4.717e-4	0.0472361	0.0196294
chr1	153815872	153815972	556683	0	-	0.51	(0.476,0.515]	chr1	65945	2	SS5_PROX	SS5_PROX:INTRON	GATAD2B	ENSG00000143614.10	ENST00000368655.5:ENST00000634544.1:ENST00000634408.1:ENST00000634564.1	protein_coding	protein_coding	protein_coding	protein_coding	1	25	2	2.23335	3.1026800000000003	3.97201	0.0634557	0.030904	0.177047	0.143385
chr16	84112647	84112747	6532169	0	-	0.5	(0.476,0.515]	chr16	632950	14	INTRON	INTRON	MBTPS1	ENSG00000140943.18	ENST00000343411.8:ENST00000570012.1:ENST00000569907.5:ENST00000567557.1:ENST00000564444.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	25	2	2.23335	3.1026800000000003	3.97201	0.0634557	0.030904	0.177047	0.143385
chr7	44407355	44407454	3527453	0	-	0.494949	(0.476,0.515]	chr7	328959	24	INTRON	INTRON	NUDCD3	ENSG00000015676.18	ENST00000355451.8:ENST00000460110.5:ENST00000493613.5:ENST00000472246.5:ENST00000464812.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	25	2	2.23335	3.1026800000000003	3.97201	0.0634557	0.030904	0.177047	0.143385
chr10	21672461	21672558	4405808	0	+	0.515464	(0.515,0.57]	chr10	406511	14	INTRON	INTRON	MLLT10	ENSG00000078403.17	ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000651298.1:ENST00000377059.7:ENST00000651382.1:ENST00000438473.6:ENST00000650921.1:ENST00000651405.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	73	2	2.57713	3.10267	3.62821	0.00176427	4.12866e-4	0.0376652	0.0181365
chr17	39991097	39991197	6608497	0	+	0.44	(0.408,0.44]	chr17	643510	5	INTRON	INTRON	PSMD3	ENSG00000108344.15	ENST00000264639.9:ENST00000415039.7:ENST00000540504.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	53	2	2.96007	3.102585	3.2451	0.00753901	0.00337792	0.0773151	0.0516884
chr12	116230622	116230722	5425078	0	-	0.27	[0,0.28]	chr12	518273	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	MED13L	ENSG00000123066.9	ENST00000281928.9:ENST00000650226.1:ENST00000548743.2:ENST00000647567.1:ENST00000551197.2:ENST00000649627.1:ENST00000648067.1:ENST00000650496.1:ENST00000648593.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	102	2	2.97616	3.102455	3.22875	0.0128425	5.02502e-4	0.0926667	0.020217099999999998
chr10	49967548	49967647	4432887	0	+	0.30303	(0.28,0.32]	chr10	408699	87	INTRON	INTRON	TIMM23B:TIMM23B-AGAP6	ENSG00000204152.14:ENSG00000178440.8	ENST00000478381.5:ENST00000651259.3:ENST00000651763.1:ENST00000651208.1:ENST00000652716.1:ENST00000483296.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	106	2	2.33573	3.102385	3.86904	0.00764237	2.33993e-4	0.0752681	0.0135358
chr2	61359460	61359560	1129430	0	-	0.28	[0,0.28]	chr2	121448	84	INTRON	INTRON	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000453133.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	75	2	2.59548	3.10238	3.60928	0.0346067	9.66382e-4	0.136649	0.0285961
chr12	55783885	55783985	5332483	0	-	0.36	(0.35,0.378]	chr12	509126	229	INTRON	INTRON	SARNP	ENSG00000205323.9	ENST00000546604.5:ENST00000552884.5:ENST00000336133.8:ENST00000552080.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	92	2	2.90945	3.1023750000000003	3.2953	0.0031465	3.57589e-4	0.0500431	0.0169202
chr6	154762298	154762398	3002106	0	+	0.44	(0.408,0.44]	chr6	280737	199	INTRON	INTRON	SCAF8	ENSG00000213079.10	ENST00000367186.7:ENST00000417268.3:ENST00000461219.5:ENST00000367178.8:ENST00000464628.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	52	2	2.84077	3.102275	3.36378	0.0132196	0.0016048	0.0940535	0.0367961
chr8	92877112	92877211	3990877	0	-	0.181818	[0,0.28]	chr8	365359	20	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	FLJ46284	ENSG00000248858.7	ENST00000504861.2:ENST00000623616.1	lncRNA	TEC	lncRNA	TEC:lncRNA	4	120	2	2.78378	3.1021900000000002	3.4206	0.00322364	0.00105071	0.0507087	0.0298884
chr1	220019256	220019333	638910	0	-	0.363636	(0.35,0.378]	chr1	75277	2	SS3_PROX	SS3_PROX:INTRON	EPRS1	ENSG00000136628.18	ENST00000366923.8:ENST00000609181.5:ENST00000477030.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	140	2	2.4429	3.10193	3.76096	4.8203e-4	2.95542e-4	0.0203411	0.0153804
chr2	167865346	167865446	1258454	0	-	0.42	(0.408,0.44]	chr2	133328	21	INTRON	INTRON	B3GALT1-AS1	ENSG00000235335.3	ENST00000430546.2:ENST00000657553.1:ENST00000670221.1:ENST00000436982.2	lncRNA	lncRNA	lncRNA	lncRNA	4	83	2	2.60785	3.101705	3.59556	0.00146754	8.33275e-4	0.035104	0.0266389
chr5	6738482	6738582	2316087	0	+	0.34	(0.32,0.35]	chr5	224275	4	SS3_PROX	SS3_PROX:INTRON	TENT4A	ENSG00000112941.14	ENST00000230859.8:ENST00000631941.2	protein_coding	protein_coding	protein_coding	protein_coding	3	44	2	1.93031	3.101655	4.273	0.0368357	0.0231421	0.138959	0.126939
chr3	11643518	11643617	1614218	0	-	0.393939	(0.378,0.408]	chr3	166697	1	UTR5	UTR5:EXON_MRNA:INTRON	VGLL4	ENSG00000144560.16	ENST00000430365.7:ENST00000273038.7:ENST00000426568.5:ENST00000445411.5:ENST00000418000.5:ENST00000417206.6:ENST00000417466.5:ENST00000419541.4:ENST00000623028.1	protein_coding	protein_coding	protein_coding	protein_coding	2	54	2	3.05393	3.101425	3.14892	0.00551532	0.00499984	0.0672816	0.0617433
chr7	66387145	66387243	3538350	0	-	0.387755	(0.378,0.408]	chr7	330062	39	INTRON	INTRON	LINC00174	ENSG00000179406.9	ENST00000421767.1:ENST00000416572.1:ENST00000438894.1	lncRNA	lncRNA	lncRNA	lncRNA	2	54	2	3.05393	3.101425	3.14892	0.00551532	0.00499984	0.0672816	0.0617433
chr1	225998992	225999092	646457	0	-	0.46	(0.44,0.476]	chr1	76608	4	SS5_PROX	SS5_PROX:INTRON	SDE2	ENSG00000143751.10	ENST00000272091.8	protein_coding	protein_coding	protein_coding	protein_coding	9	165	2	2.36658	3.10126	3.83594	4.01032e-4	1.50875e-5	0.0179994	0.00311444
chr2	46615838	46615932	1114288	0	-	0.361702	(0.35,0.378]	chr2	119479	8	EXON_LNCRNA	EXON_LNCRNA:INTRON	PIGF	ENSG00000151665.13	ENST00000281382.11:ENST00000306465.8:ENST00000412717.1:ENST00000495933.1:ENST00000474980.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	33	2	1.90405	3.10122	4.29839	0.0482651	0.0294717	0.171852	0.128055
chr4	185349446	185349546	2088788	0	+	0.36	(0.35,0.378]	chr4	206493	24	INTRON	INTRON	SNX25	ENSG00000109762.17	ENST00000504273.5:ENST00000618785.4:ENST00000652585.2:ENST00000264694.13:ENST00000512853.5:ENST00000504959.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	33	2	1.90405	3.10122	4.29839	0.0482651	0.0294717	0.171852	0.128055
chrX	131730115	131730214	7891977	0	-	0.373737	(0.35,0.378]	chrX	803396	180	INTRON	INTRON	FIRRE	ENSG00000213468.7	ENST00000649541.1:ENST00000662867.1:ENST00000663405.1:ENST00000665076.1:ENST00000637577.2:ENST00000654978.1:ENST00000647966.1:ENST00000649391.1:ENST00000648028.2:ENST00000427391.2	lncRNA	lncRNA	lncRNA	lncRNA	2	33	2	1.90405	3.10122	4.29839	0.0482651	0.0294717	0.171852	0.128055
chrX	110316899	110316998	7862944	0	-	0.40404	(0.378,0.408]	chrX	801523	70	INTRON	INTRON	AMMECR1	ENSG00000101935.12	ENST00000686065.1:ENST00000262844.10:ENST00000372059.6:ENST00000372057.1:ENST00000680410.1:ENST00000473662.1:ENST00000496695.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	178	2	3.03259	3.101145	3.1697	2.77842e-4	9.08123e-6	0.0152952	0.00216583
chr15	78472324	78472424	6067837	0	+	0.38	(0.378,0.408]	chr15	577957	4	SS5_PROX	SS5_PROX:INTRON	IREB2	ENSG00000136381.13	ENST00000258886.13:ENST00000560440.5:ENST00000558570.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	177	2	2.69554	3.10106	3.50658	3.07621e-4	9.63042e-6	0.0161432	0.00224473
chr12	55821606	55821698	5332840	0	-	0.521739	(0.515,0.57]	chr12	509175	8	UTR3	UTR3:EXON_MRNA	DNAJC14	ENSG00000135392.19	ENST00000357606.7:ENST00000678005.2:ENST00000547445.2:ENST00000546957.2	protein_coding	protein_coding	protein_coding	protein_coding	4	83	2	2.78208	3.10093	3.41978	0.00209264	1.03805e-4	0.0424943	0.00915599
chr5	104105702	104105802	2441472	0	+	0.37	(0.35,0.378]	chr5	234410	4	INTRON	INTRON	LINC02163	ENSG00000251026.2	ENST00000662211.1:ENST00000666145.1	lncRNA	lncRNA	lncRNA	lncRNA	6	139	2	2.49532	3.10086	3.7064	0.00165224	2.11061e-5	0.0369207	0.00355554
chr17	44441987	44442086	6780217	0	-	0.292929	(0.28,0.32]	chr17	668667	29	INTRON	INTRON	GPATCH8	ENSG00000186566.13	ENST00000591680.6:ENST00000335500.8:ENST00000587228.5:ENST00000585614.1:ENST00000590041.5:ENST00000586265.5:ENST00000592746.5:ENST00000586037.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	65	2	2.73077	3.100695	3.47062	0.0220748	0.00137212	0.115395	0.0340241
chr16	2753745	2753845	6279827	0	+	0.52	(0.515,0.57]	chr16	600759	1	SS5_PROX	SS5_PROX:INTRON	SRRM2	ENSG00000167978.17	ENST00000576924.5:ENST00000301740.13:ENST00000575009.5:ENST00000576894.5:ENST00000575701.4:ENST00000630499.2:ENST00000576415.5:ENST00000571378.5:ENST00000574340.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	149	2	2.9961	3.1006850000000004	3.20527	4.73488e-5	3.00111e-5	0.00562068	0.00455026
chr1	212888869	212888957	310154	0	+	0.522727	(0.515,0.57]	chr1	35825	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	FLVCR1	ENSG00000162769.13	ENST00000366971.9:ENST00000419102.1:ENST00000483790.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	34	2	1.60221	3.100675	4.59914	0.0581855	0.00616166	0.188704	0.0676501
chrX	109709874	109709974	7861466	0	-	0.53	(0.515,0.57]	chrX	801455	133	INTRON	INTRON	ACSL4	ENSG00000068366.21	ENST00000469796.7:ENST00000672401.1:ENST00000348502.10:ENST00000340800.7:ENST00000684030.1:ENST00000682031.1:ENST00000671846.1:ENST00000672282.1:ENST00000502391.6:ENST00000684414.1:ENST00000673016.1:ENST00000508092.5:ENST00000504383.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	34	2	1.60221	3.100675	4.59914	0.0581855	0.00616166	0.188704	0.0676501
chr10	22675550	22675650	4580112	0	-	0.39	(0.378,0.408]	chr10	422040	133	INTRON	INTRON	PIP4K2A	ENSG00000150867.14	ENST00000376573.9:ENST00000545335.5:ENST00000605011.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	87	2	2.36673	3.1006	3.83447	0.00539899	1.86403e-4	0.064414	0.0119078
chr20	47219559	47219658	7348120	0	-	0.484848	(0.476,0.515]	chr20	749229	65	INTRON	INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000467200.6:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4	protein_coding	protein_coding	protein_coding	protein_coding	4	86	2	2.11679	3.10057	4.08435	0.0115627	7.63877e-5	0.0962115	0.0078038
chr1	193166390	193166490	285065	0	+	0.41	(0.408,0.44]	chr1	32819	48	INTRON	INTRON	CDC73	ENSG00000134371.14	ENST00000649895.1:ENST00000643006.1:ENST00000367435.5:ENST00000650197.1:ENST00000648071.1:ENST00000635846.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	32	2	2.07919	3.10053	4.12187	0.0354689	0.0291499	0.14147	0.137535
chr16	89394715	89394811	6542634	0	-	0.416667	(0.408,0.44]	chr16	634244	17	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000647238.1:ENST00000644045.1:ENST00000643147.1:ENST00000644139.1:ENST00000568512.6:ENST00000566973.1:ENST00000562211.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	32	2	2.07919	3.10053	4.12187	0.0354689	0.0291499	0.14147	0.137535
chr5	54302497	54302597	2620838	0	-	0.44	(0.408,0.44]	chr5	248862	163	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2:ENST00000505630.5:ENST00000505383.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	32	2	2.07919	3.10053	4.12187	0.0354689	0.0291499	0.14147	0.137535
chr5	181295097	181295149	2563655	0	+	0.326923	(0.32,0.35]	chr5	245343	2	EXON_PSEUDO	EXON_PSEUDO	ENSG00000274525	ENSG00000274525.1	ENST00000622195.1	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	2	63	2	2.78073	3.100495	3.42026	0.01481	0.00219805	0.106702	0.0417893
chr3	15848383	15848483	1624331	0	-	0.5	(0.476,0.515]	chr3	168034	337	INTRON	INTRON	ANKRD28	ENSG00000206560.12	ENST00000399451.6:ENST00000412318.5:ENST00000439830.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	32	2	2.06491	3.100385	4.13586	0.031846	0.0304733	0.143385	0.13151
chr7	66741691	66741791	3325485	0	+	0.48	(0.476,0.515]	chr7	309233	5	INTRON	INTRON	RABGEF1	ENSG00000154710.18	ENST00000607882.5:ENST00000284957.9:ENST00000450873.6:ENST00000442563.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	32	2	2.06491	3.100385	4.13586	0.031846	0.0304733	0.143385	0.13151
chr18	3457940	3458037	6867186	0	+	0.309278	(0.28,0.32]	chr18	680349	1	UTR3	UTR3:EXON_MRNA	TGIF1	ENSG00000177426.22	ENST00000401449.5:ENST00000548489.6:ENST00000618001.4:ENST00000405385.7:ENST00000407501.6:ENST00000343820.10:ENST00000551541.5:ENST00000345133.9:ENST00000330513.10:ENST00000400167.6:ENST00000472042.1	protein_coding	protein_coding	protein_coding	protein_coding	3	88	2	2.59504	3.1003600000000002	3.60568	0.00582473	0.00127168	0.0687439	0.032635
chr1	15898538	15898638	35173	0	+	0.37	(0.35,0.378]	chr1	4272	215	INTRON	INTRON	SPEN	ENSG00000065526.12	ENST00000673875.1:ENST00000375759.8:ENST00000438066.1:ENST00000442985.1	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	2.39939	3.10034	3.80129	0.0504034	0.0458078	0.17488	0.149888
chr6	147318496	147318596	2989864	0	+	0.37	(0.35,0.378]	chr6	280084	17	INTRON	INTRON	STXBP5	ENSG00000164506.15	ENST00000321680.11:ENST00000367481.7:ENST00000367480.7	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	2.39939	3.10034	3.80129	0.0504034	0.0458078	0.17488	0.149888
chr6	154840342	154840442	3002909	0	+	0.36	(0.35,0.378]	chr6	280851	62	INTRON	INTRON	TIAM2	ENSG00000146426.19	ENST00000461783.7:ENST00000535064.1:ENST00000460692.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	28	2	2.39939	3.10034	3.80129	0.0504034	0.0458078	0.17488	0.149888
chr12	57542750	57542848	5339675	0	-	0.489796	(0.476,0.515]	chr12	510887	10	INTRON	INTRON	DCTN2	ENSG00000175203.17	ENST00000548249.6:ENST00000678505.1:ENST00000552390.6:ENST00000678521.1:ENST00000678322.1:ENST00000543672.6:ENST00000678653.1:ENST00000434715.7:ENST00000550201.5:ENST00000549394.5:ENST00000550750.2:ENST00000551611.6:ENST00000550954.5:ENST00000546670.5:ENST00000547345.5:ENST00000547480.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	83	2	2.21025	3.100205	3.99016	0.00913757	7.96444e-5	0.0812335	0.00742553
chr4	128848479	128848579	2044659	0	+	0.53	(0.515,0.57]	chr4	203017	1	SS3_PROX	SS3_PROX:INTRON	JADE1	ENSG00000077684.16	ENST00000226319.11:ENST00000511647.5:ENST00000452328.6:ENST00000504089.5:ENST00000512960.5:ENST00000503785.5:ENST00000610919.4:ENST00000510308.5:ENST00000511925.5:ENST00000413543.6:ENST00000611140.4:ENST00000507833.5:ENST00000508997.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	42	2	1.43029	3.1000650000000003	4.76984	0.0645632	0.00198034	0.179192	0.0411469
chr22	23225131	23225231	7483653	0	+	0.39	(0.378,0.408]	chr22	763541	254	INTRON	INTRON	BCR	ENSG00000186716.21	ENST00000479188.5:ENST00000359540.7:ENST00000305877.13:ENST00000463770.5:ENST00000487679.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	121	2	1.88712	3.100035	4.31295	0.00832823	1.30334e-5	0.0774402	0.0026712
chr5	90662169	90662269	2421447	0	+	0.44	(0.408,0.44]	chr5	232880	35	INTRON	INTRON	ADGRV1	ENSG00000164199.18	ENST00000405460.9:ENST00000640403.1:ENST00000639676.1:ENST00000639473.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	95	2	2.50424	3.09998	3.69572	0.00101099	5.37849e-4	0.0293364	0.0214775
chr15	27533771	27533870	5987798	0	+	0.30303	(0.28,0.32]	chr15	569232	10	UTR3	UTR3:EXON_MRNA	GABRG3	ENSG00000182256.13	ENST00000615808.5	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	2.18975	3.099885	4.01002	0.0776042	0.0434868	0.196285	0.162255
chr15	63668643	63668742	6199203	0	-	0.313131	(0.28,0.32]	chr15	591216	18	INTRON	INTRON	HERC1	ENSG00000103657.14	ENST00000443617.7	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	2.18975	3.099885	4.01002	0.0776042	0.0434868	0.196285	0.162255
chr5	29090192	29090292	2332657	0	+	0.31	(0.28,0.32]	chr5	225147	197	INTRON	INTRON	LINC02109	ENSG00000259786.7	ENST00000658190.1	lncRNA	lncRNA	lncRNA	lncRNA	1	30	2	2.18975	3.099885	4.01002	0.0776042	0.0434868	0.196285	0.162255
chr2	241251969	241252066	1347907	0	-	0.463918	(0.44,0.476]	chr2	141567	11	INTRON	INTRON	HDLBP	ENSG00000115677.18	ENST00000391975.5:ENST00000427183.6:ENST00000310931.10:ENST00000391976.6:ENST00000373292.8:ENST00000498595.5:ENST00000477477.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	111	2	3.06222	3.09984	3.13746	8.483e-4	8.94727e-5	0.0267232	0.0079464
chr16	89466072	89466172	6543357	0	-	0.56	(0.515,0.57]	chr16	634281	344	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	47	2	2.52504	3.099785	3.67453	0.029342	3.27949e-4	0.128055	0.0160995
chr20	47331958	47332058	7349264	0	-	0.46	(0.44,0.476]	chr20	749346	130	INTRON	INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000435836.5:ENST00000446894.5:ENST00000441977.1	protein_coding	protein_coding	protein_coding	protein_coding	2	52	2	3.02366	3.09969	3.17572	0.00603307	0.00427037	0.0700813	0.0573912
chr8	98701370	98701470	3998913	0	-	0.46	(0.44,0.476]	chr8	366070	498	INTRON	INTRON	STK3	ENSG00000104375.17	ENST00000617590.1:ENST00000419617.7:ENST00000523601.5:ENST00000518165.5:ENST00000521649.5:ENST00000424861.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	52	2	3.02366	3.09969	3.17572	0.00603307	0.00427037	0.0700813	0.0573912
chr15	63747223	63747313	6200021	0	-	0.477778	(0.476,0.515]	chr15	591377	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HERC1	ENSG00000103657.14	ENST00000443617.7:ENST00000561400.1:ENST00000560519.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	82	2	2.59304	3.099655	3.60627	0.00158794	7.49088e-4	0.0367961	0.0251179
chr1	153636843	153636939	226734	0	+	0.3125	(0.28,0.32]	chr1	25978	3	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	CHTOP	ENSG00000160679.13	ENST00000368690.7:ENST00000614256.4:ENST00000368694.8:ENST00000495554.1:ENST00000403433.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	156	2	2.05287	3.0996449999999998	4.14642	0.00283692	1.29077e-4	0.0492836	0.0103343
chr21	10431273	10431372	7368307	0	+	0.464646	(0.44,0.476]	chr21	751975	160	INTRON	INTRON	BAGE2	ENSG00000187172.15	ENST00000474011.5:ENST00000470054.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	4	93	2	2.74546	3.099635	3.45381	0.00326603	7.90762e-5	0.0508595	0.00739361
chr2	213605488	213605588	1005847	0	+	0.48	(0.476,0.515]	chr2	107765	1150	INTRON	INTRON	SPAG16	ENSG00000144451.20	ENST00000406979.6:ENST00000452556.5:ENST00000331683.10:ENST00000451561.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	101	2	2.61676	3.099595	3.58243	7.62098e-4	6.18479e-4	0.0252982	0.0223951
chr11	9251094	9251194	4908931	0	-	0.39	(0.378,0.408]	chr11	460115	57	INTRON	INTRON	DENND5A	ENSG00000184014.9	ENST00000328194.8:ENST00000681203.1:ENST00000530780.2:ENST00000679999.1:ENST00000680470.1:ENST00000680554.1:ENST00000681425.1:ENST00000679568.1:ENST00000679446.1:ENST00000680294.1:ENST00000680742.1:ENST00000680885.1:ENST00000530044.5:ENST00000526707.5:ENST00000532696.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	115	2	3.0047	3.0995150000000002	3.19433	5.08283e-4	1.9857e-4	0.020816	0.0122787
chr10	28537815	28537849	4413849	0	+	0.264706	[0,0.28]	chr10	407142	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	WAC	ENSG00000095787.24	ENST00000680735.1:ENST00000375664.8:ENST00000428935.6:ENST00000651598.1:ENST00000628285.3:ENST00000681112.1:ENST00000679570.1:ENST00000375646.5:ENST00000354911.9:ENST00000347934.8:ENST00000420266.6:ENST00000651885.1:ENST00000651441.1:ENST00000679398.1:ENST00000424454.5:ENST00000442148.6:ENST00000448193.5:ENST00000414108.6:ENST00000679428.1:ENST00000439676.5:ENST00000345541.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	171	2	2.15711	3.0993649999999997	4.04162	0.0161128	7.48313e-6	0.101453	0.00195238
chr12	53461811	53461895	5142989	0	+	0.47619	(0.44,0.476]	chr12	485409	3	INTRON	INTRON	PCBP2	ENSG00000197111.16	ENST00000546463.6:ENST00000437231.5:ENST00000447282.5:ENST00000359282.9:ENST00000549863.5:ENST00000359462.9:ENST00000552296.6:ENST00000552819.5:ENST00000455667.7:ENST00000439930.7:ENST00000548933.5:ENST00000546652.6:ENST00000562264.5:ENST00000550585.5:ENST00000547987.2:ENST00000553064.6:ENST00000547859.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	83	2	2.38763	3.09932	3.81101	0.00394089	3.0729e-4	0.0573041	0.0161362
chr5	131474437	131474536	2717542	0	-	0.232323	[0,0.28]	chr5	255517	13	INTRON	INTRON	RAPGEF6	ENSG00000158987.22	ENST00000509018.6:ENST00000671916.1:ENST00000507093.5:ENST00000296859.10:ENST00000627212.2:ENST00000512052.5:ENST00000308008.10:ENST00000515170.5:ENST00000510071.5:ENST00000514179.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	73	2	2.86008	3.09931	3.33854	0.0177015	0.00278022	0.105304	0.0488412
chr11	47803936	47804036	4951701	0	-	0.5	(0.476,0.515]	chr11	464535	4	SS3_PROX	SS3_PROX:INTRON	NUP160	ENSG00000030066.14	ENST00000694866.1:ENST00000378460.7:ENST00000530326.5:ENST00000528071.5:ENST00000526569.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	41	2	1.58335	3.09927	4.61519	0.0640461	0.00528365	0.177882	0.0656295
chr3	172774222	172774322	1563463	0	+	0.53	(0.515,0.57]	chr3	161782	2	SS5_PROX	SS5_PROX:INTRON	ECT2	ENSG00000114346.14	ENST00000232458.9:ENST00000540509.5:ENST00000392692.8:ENST00000417960.5:ENST00000441497.6:ENST00000444250.1	protein_coding	protein_coding	protein_coding	protein_coding	2	29	2	2.11313	3.099255	4.08538	0.0256725	0.0253843	0.133676	0.12011
chr6	87229428	87229528	2914004	0	+	0.52	(0.515,0.57]	chr6	275311	56	INTRON	INTRON	ZNF292	ENSG00000188994.13	ENST00000369577.8:ENST00000518845.1:ENST00000339907.8:ENST00000496806.2	protein_coding	protein_coding	protein_coding	protein_coding	2	29	2	2.11313	3.099255	4.08538	0.0256725	0.0253843	0.133676	0.12011
chr12	62346234	62346333	5150423	0	+	0.232323	[0,0.28]	chr12	487350	97	INTRON	INTRON	USP15	ENSG00000135655.16	ENST00000353364.7:ENST00000550632.5:ENST00000280377.10	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	73	2	2.97616	3.0992300000000004	3.2223	0.0128425	0.00422777	0.0926667	0.0595466
chr9	130759154	130759254	4214316	0	+	0.39	(0.378,0.408]	chr9	386427	443	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000393293.4	protein_coding	protein_coding	protein_coding	protein_coding	8	163	2	2.2403	3.09923	3.95816	0.00125943	8.99839e-6	0.03295	0.00231286
chr15	41366263	41366363	6005120	0	+	0.38	(0.378,0.408]	chr15	571344	4	SS5_PROX	SS5_PROX:INTRON	NUSAP1	ENSG00000137804.14	ENST00000668273.1:ENST00000260359.10:ENST00000558123.5:ENST00000414849.6:ENST00000450592.6:ENST00000559596.6:ENST00000560747.5:ENST00000560177.5:ENST00000557840.5:ENST00000560898.5:ENST00000560318.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	72	2	2.43657	3.0991600000000004	3.76175	0.0106733	2.68579e-4	0.0861859	0.0145349
chr3	41237660	41237733	1403428	0	+	0.328767	(0.32,0.35]	chr3	147469	3	SS3_PROX	SS3_PROX:INTRON	CTNNB1	ENSG00000168036.18	ENST00000643541.1:ENST00000645210.1:ENST00000646381.1:ENST00000405570.6:ENST00000642248.1:ENST00000433400.6:ENST00000642992.1:ENST00000431914.6:ENST00000642836.1:ENST00000396185.8:ENST00000642986.1:ENST00000644678.1:ENST00000643031.1:ENST00000396183.7:ENST00000645982.1:ENST00000453024.6:ENST00000645900.1:ENST00000647264.1:ENST00000646174.1:ENST00000643992.1:ENST00000642886.1:ENST00000647390.1:ENST00000643052.1:ENST00000349496.11:ENST00000642426.1:ENST00000646074.1:ENST00000645276.1:ENST00000646116.1:ENST00000644873.1:ENST00000643865.1:ENST00000644867.1:ENST00000646725.1:ENST00000645493.1:ENST00000646369.1:ENST00000643977.1:ENST00000647413.1:ENST00000644524.1:ENST00000645305.1:ENST00000643297.1:ENST00000450969.6:ENST00000642315.1:ENST00000645320.1:ENST00000441708.2:ENST00000647021.1:ENST00000471014.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	56	2	1.57911	3.099	4.61889	0.0313129	0.0166646	0.144381	0.102621
chr7	132960624	132960724	3644669	0	-	0.38	(0.378,0.408]	chr7	338848	733	INTRON	INTRON	CHCHD3	ENSG00000106554.13	ENST00000262570.10:ENST00000448878.6:ENST00000496427.5:ENST00000423635.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	116	2	2.80619	3.0989750000000003	3.39176	8.30981e-4	1.17224e-4	0.0266389	0.00929802
chr4	67485069	67485169	2152893	0	-	0.39	(0.378,0.408]	chr4	211913	97	INTRON	INTRON	CENPC	ENSG00000145241.11	ENST00000273853.11:ENST00000513216.5:ENST00000506882.5:ENST00000515140.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	50	2	1.45934	3.098865	4.73839	0.0442931	0.00837252	0.162302	0.0774402
chr10	70167321	70167421	4640862	0	-	0.36	(0.35,0.378]	chr10	426914	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SAR1A	ENSG00000079332.15	ENST00000373242.6:ENST00000373241.9:ENST00000373239.2	protein_coding	protein_coding	protein_coding	protein_coding	8	134	2	1.97767	3.09871	4.21975	0.00335504	5.46e-5	0.0531599	0.00651589
chr6	133968754	133968854	2961912	0	+	0.54	(0.515,0.57]	chr6	278511	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	TBPL1	ENSG00000028839.10	ENST00000613034.4:ENST00000416965.5:ENST00000457715.1:ENST00000367871.5:ENST00000237264.9:ENST00000367869.1	protein_coding	protein_coding	protein_coding	protein_coding	3	61	2	2.27238	3.09869	3.925	0.0161808	8.71525e-5	0.101453	0.00783545
chr21	37513625	37513724	7407715	0	+	0.40404	(0.378,0.408]	chr21	754961	12	UTR3	UTR3:EXON_MRNA	DYRK1A	ENSG00000157540.22	ENST00000647188.2:ENST00000647504.1:ENST00000338785.8:ENST00000646548.1	protein_coding	protein_coding	protein_coding	protein_coding	19	414	2	3.00977	3.098545	3.18732	8.46044e-6	4.79014e-7	0.00222262	3.69851e-4
chr1	160321842	160321941	572098	0	-	0.333333	(0.32,0.35]	chr1	69341	74	INTRON	INTRON	COPA	ENSG00000122218.17	ENST00000241704.8:ENST00000696204.1:ENST00000696203.1:ENST00000696202.1:ENST00000649963.1:ENST00000696208.1:ENST00000696207.1:ENST00000696206.1:ENST00000649676.1:ENST00000368069.7:ENST00000647693.1:ENST00000649787.1:ENST00000650154.1:ENST00000647799.1:ENST00000648805.1:ENST00000647683.1:ENST00000649231.1:ENST00000648501.1:ENST00000696209.1:ENST00000696210.1:ENST00000696211.1:ENST00000647899.1:ENST00000696212.1:ENST00000696214.1:ENST00000696213.1:ENST00000696215.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	37	2	2.25173	3.09851	3.94529	0.0693433	0.0180122	0.184298	0.114436
chr22	40853840	40853938	7590693	0	-	0.326531	(0.32,0.35]	chr22	777281	26	INTRON	INTRON	ST13	ENSG00000100380.15	ENST00000216218.8:ENST00000455824.1:ENST00000411695.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	37	2	2.25173	3.09851	3.94529	0.0693433	0.0180122	0.184298	0.114436
chr10	11884556	11884656	4556428	0	-	0.51	(0.476,0.515]	chr10	420498	99	INTRON	INTRON	PROSER2-AS1	ENSG00000225778.5	ENST00000445498.5	lncRNA	lncRNA	lncRNA	lncRNA	7	164	2	2.84089	3.098465	3.35604	4.67054e-4	1.23922e-5	0.0195793	0.00280409
chrX	136929966	136930066	7727669	0	+	0.54	(0.515,0.57]	chrX	790772	42	INTRON	INTRON	TM9SF5P	ENSG00000234062.9	ENST00000650669.2:ENST00000687469.1:ENST00000431464.6:ENST00000685550.1:ENST00000685929.1:ENST00000424306.5:ENST00000687978.1:ENST00000688713.1:ENST00000693626.1:ENST00000686432.1:ENST00000693698.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	2	48	2	2.65834	3.09839	3.53844	0.0187418	7.92613e-4	0.117523	0.0259663
chr16	56386714	56386811	6490882	0	-	0.360825	(0.35,0.378]	chr16	627679	3	INTRON	INTRON	AMFR	ENSG00000159461.15	ENST00000290649.10:ENST00000492830.5:ENST00000567738.1:ENST00000568762.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	34	2	2.10859	3.098375	4.08816	0.046021	0.0272722	0.149888	0.136494
chr6	20858171	20858271	2831628	0	+	0.36	(0.35,0.378]	chr6	265679	116	INTRON	INTRON	CDKAL1	ENSG00000145996.11	ENST00000274695.8:ENST00000378610.1	protein_coding	protein_coding	protein_coding	protein_coding	2	34	2	2.10859	3.098375	4.08816	0.046021	0.0272722	0.149888	0.136494
chr17	59154160	59154258	6802391	0	-	0.346939	(0.32,0.35]	chr17	671864	25	INTRON	INTRON	SKA2	ENSG00000182628.13	ENST00000330137.12:ENST00000580541.1:ENST00000578105.1:ENST00000578519.5:ENST00000583927.1:ENST00000581068.5:ENST00000437036.6:ENST00000583380.5:ENST00000583976.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	149	2	2.34962	3.09836	3.8471	0.00342953	1.08399e-5	0.0517761	0.00242118
chr6	57103778	57103877	2878195	0	+	0.40404	(0.378,0.408]	chr6	273248	18	UTR3	UTR3:EXON_MRNA:INTRON	ZNF451	ENSG00000112200.17	ENST00000515290.5:ENST00000510483.5:ENST00000357489.7:ENST00000370708.8:ENST00000370702.5:ENST00000444273.6:ENST00000370711.9:ENST00000370706.9:ENST00000491832.6:ENST00000502749.1:ENST00000504603.1:ENST00000509071.5:ENST00000509251.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	73	2	2.76893	3.098215	3.4275	0.00316735	0.00126053	0.0503085	0.03295
chr19	57330205	57330299	7103823	0	+	0.297872	(0.28,0.32]	chr19	712886	11	UTR3	UTR3:EXON_MRNA	ZNF543	ENSG00000178229.8	ENST00000321545.5	protein_coding	protein_coding	protein_coding	protein_coding	2	41	2	1.76293	3.098165	4.4334	0.0766478	0.0163355	0.196164	0.109464
chr7	148742526	148742626	3444129	0	+	0.3	(0.28,0.32]	chr7	321190	12	INTRON	INTRON	CUL1	ENSG00000055130.18	ENST00000409469.5:ENST00000662716.1:ENST00000665936.1:ENST00000663044.1:ENST00000602748.5:ENST00000663835.1:ENST00000655324.1:ENST00000662132.1:ENST00000325222.9:ENST00000656001.1:ENST00000666124.1:ENST00000671421.1:ENST00000671397.1:ENST00000662670.1:ENST00000660240.1:ENST00000662975.1:ENST00000660013.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	41	2	1.76293	3.098165	4.4334	0.0766478	0.0163355	0.196164	0.109464
chr17	37325146	37325246	6762227	0	-	0.5	(0.476,0.515]	chr17	664944	255	INTRON	INTRON	ACACA	ENSG00000278540.5	ENST00000616317.5:ENST00000614428.4:ENST00000613146.4:ENST00000615229.4:ENST00000621960.1:ENST00000617548.1:ENST00000616352.4:ENST00000614789.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	110	2	2.89673	3.09816	3.29959	3.48163e-4	2.65033e-4	0.0166215	0.0149989
chr21	46425233	46425330	7422269	0	+	0.628866	(0.57,1]	chr21	756886	28	INTRON	INTRON	PCNT	ENSG00000160299.18	ENST00000695558.1:ENST00000359568.10:ENST00000480896.5:ENST00000695527.1:ENST00000695528.1:ENST00000695529.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	45	2	2.30825	3.098155	3.88806	0.00499769	6.56297e-5	0.0617433	0.0067007
chr18	2722418	2722518	6865555	0	+	0.31	(0.28,0.32]	chr18	680045	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	SMCHD1	ENSG00000101596.17	ENST00000320876.11:ENST00000688342.1:ENST00000693213.1:ENST00000577880.5:ENST00000584897.5:ENST00000581711.1:ENST00000583441.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	104	2	2.5905300000000002	3.0981050000000003	3.60568	0.0020216	0.00127168	0.0416117	0.032635
chr10	79758023	79758123	4656994	0	-	0.28	[0,0.28]	chr10	429003	116	INTRON	INTRON	NUTM2B-AS1	ENSG00000225484.7	ENST00000671459.1:ENST00000596088.5:ENST00000600376.5:ENST00000601369.6:ENST00000662025.1:ENST00000670682.1:ENST00000619625.4:ENST00000658528.1:ENST00000477192.6	lncRNA	lncRNA	lncRNA	lncRNA	3	99	2	2.6958	3.0980600000000003	3.50032	0.00456758	0.00245166	0.0622215	0.0446188
chr3	194620262	194620361	1891659	0	-	0.434343	(0.408,0.44]	chr3	189319	21	INTRON	INTRON	TMEM44	ENSG00000145014.18	ENST00000392432.6:ENST00000347147.9:ENST00000381975.7:ENST00000473092.5:ENST00000452358.5:ENST00000419280.5:ENST00000494894.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	70	2	2.60048	3.09802	3.59556	0.00484324	8.33275e-4	0.0640618	0.0266389
chr6	132786542	132786640	3222702	0	-	0.346939	(0.32,0.35]	chr6	299624	21	INTRON	INTRON	SLC18B1	ENSG00000146409.12	ENST00000275227.9:ENST00000647932.1:ENST00000650278.1:ENST00000650136.1:ENST00000650298.1:ENST00000367918.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	184	2	2.8839	3.097985	3.31207	3.78985e-4	4.06734e-5	0.0180834	0.00518378
chr3	9434044	9434112	1359266	0	+	0.529412	(0.515,0.57]	chr3	142716	1	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SETD5	ENSG00000168137.20	ENST00000402198.7:ENST00000431285.5:ENST00000682536.1:ENST00000663774.1:ENST00000665872.1:ENST00000666307.1:ENST00000693430.1:ENST00000691925.1:ENST00000684606.1:ENST00000691175.1:ENST00000688835.1:ENST00000443339.5:ENST00000406341.5:ENST00000670063.1:ENST00000684055.1:ENST00000407969.5:ENST00000490791.5:ENST00000692920.1:ENST00000493918.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	14	232	2	2.83858	3.097965	3.35735	7.20595e-6	3.76298e-6	0.00201767	0.00127614
chr12	10712822	10712919	5265899	0	-	0.42268	(0.408,0.44]	chr12	502107	22	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	YBX3	ENSG00000060138.13	ENST00000228251.9:ENST00000279550.11:ENST00000540447.5:ENST00000542002.5:ENST00000542641.5:ENST00000539204.5:ENST00000544622.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	26	2	2.36073	3.097835	3.83494	0.0481658	0.0411442	0.161534	0.153019
chr15	41665366	41665465	6006904	0	+	0.424242	(0.408,0.44]	chr15	571624	45	INTRON	INTRON	MGA	ENSG00000174197.18	ENST00000566718.6:ENST00000545763.6:ENST00000570161.6:ENST00000563576.6:ENST00000566586.6:ENST00000219905.13:ENST00000682463.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	26	2	2.36073	3.097835	3.83494	0.0481658	0.0411442	0.161534	0.153019
chr17	59037050	59037149	6801215	0	-	0.434343	(0.408,0.44]	chr17	671713	46	INTRON	INTRON	TRIM37	ENSG00000108395.14	ENST00000393066.7:ENST00000577554.5:ENST00000262294.12:ENST00000393065.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	26	2	2.36073	3.097835	3.83494	0.0481658	0.0411442	0.161534	0.153019
chr18	1603447	1603547	6859900	0	+	0.43	(0.408,0.44]	chr18	679729	154	INTRON	INTRON	ENSG00000266602	ENSG00000266602.2	ENST00000668980.1:ENST00000665846.1:ENST00000661994.1:ENST00000660357.1:ENST00000657750.1:ENST00000662133.1:ENST00000671074.1:ENST00000653330.1:ENST00000655815.1:ENST00000653094.1:ENST00000662293.1:ENST00000669226.1:ENST00000668483.1:ENST00000653006.1:ENST00000663966.1:ENST00000657235.1:ENST00000652957.1:ENST00000665474.1:ENST00000583163.2:ENST00000665135.1:ENST00000660136.1:ENST00000663660.1:ENST00000663472.1	lncRNA	lncRNA	lncRNA	lncRNA	1	26	2	2.36073	3.097835	3.83494	0.0481658	0.0411442	0.161534	0.153019
chr2	86023571	86023670	1169747	0	-	0.414141	(0.408,0.44]	chr2	124722	35	UTR3	UTR3:EXON_MRNA	POLR1A	ENSG00000068654.17	ENST00000263857.11	protein_coding	protein_coding	protein_coding	protein_coding	1	26	2	2.36073	3.097835	3.83494	0.0481658	0.0411442	0.161534	0.153019
chr4	901048	901148	2093973	0	-	0.44	(0.408,0.44]	chr4	206956	25	INTRON	INTRON	GAK	ENSG00000178950.18	ENST00000314167.9:ENST00000511163.5:ENST00000505819.5:ENST00000507580.5:ENST00000502656.5:ENST00000507991.1:ENST00000512325.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	26	2	2.36073	3.097835	3.83494	0.0481658	0.0411442	0.161534	0.153019
chr3	10144517	10144617	1363141	0	+	0.58	(0.57,1]	chr3	143671	11	INTRON	INTRON	VHL	ENSG00000134086.9	ENST00000696153.1:ENST00000256474.3:ENST00000696142.1:ENST00000345392.2:ENST00000696143.1:ENST00000477538.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	70	2	2.85802	3.0977249999999996	3.33743	3.01883e-4	1.25642e-5	0.0160895	0.00264458
chr18	46187023	46187123	6899211	0	+	0.56	(0.515,0.57]	chr18	683605	123	INTRON	INTRON	C18orf25	ENSG00000152242.11	ENST00000588730.1:ENST00000587591.5:ENST00000619230.1:ENST00000615052.5:ENST00000619301.4:ENST00000615553.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	37	2	1.69407	3.0975449999999998	4.50102	0.0459452	0.00510768	0.149888	0.0646039
chr2	97146085	97146185	831178	0	+	0.45	(0.44,0.476]	chr2	92981	2	SS3_PROX	SS3_PROX:INTRON	ANKRD36	ENSG00000135976.21	ENST00000420699.9:ENST00000652721.1:ENST00000461153.7	protein_coding	protein_coding	protein_coding	protein_coding	3	42	2	1.66462	3.09748	4.53034	0.0520247	0.00672609	0.159508	0.0738715
chr1	11018173	11018273	24614	0	+	0.52	(0.515,0.57]	chr1	2584	4	SS3_PROX	SS3_PROX:INTRON	TARDBP	ENSG00000120948.19	ENST00000473118.5:ENST00000639083.1:ENST00000639599.1:ENST00000629725.2:ENST00000439080.6:ENST00000240185.8:ENST00000472476.5:ENST00000476201.5:ENST00000613864.4:ENST00000614757.4:ENST00000621715.4:ENST00000473869.5:ENST00000315091.7:ENST00000616545.4:ENST00000621790.4:ENST00000649624.1:ENST00000622057.4:ENST00000617172.4:ENST00000618606.1:ENST00000611963.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	130	2	2.90318	3.0974	3.29162	9.20324e-5	3.90524e-5	0.00801872	0.00533644
chr4	78787005	78787104	1981491	0	+	0.474747	(0.44,0.476]	chr4	198463	99	INTRON	INTRON	BMP2K	ENSG00000138756.19	ENST00000389010.7:ENST00000502613.3:ENST00000502871.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	111	2	2.79565	3.09734	3.39903	7.94781e-4	1.07749e-4	0.0260201	0.00878438
chr5	139590871	139590971	2500799	0	+	0.52	(0.515,0.57]	chr5	239026	281	INTRON	INTRON	UBE2D2	ENSG00000131508.16	ENST00000511725.5:ENST00000505007.5:ENST00000398733.8:ENST00000510470.1:ENST00000398734.8:ENST00000505548.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	60	2	2.57298	3.0973100000000002	3.62164	0.00506495	5.41944e-4	0.0646039	0.0215026
chr12	122140227	122140326	5240500	0	+	0.383838	(0.378,0.408]	chr12	497560	9	INTRON	INTRON	MLXIP	ENSG00000175727.14	ENST00000319080.12:ENST00000538698.5:ENST00000542417.1	protein_coding	protein_coding	protein_coding	protein_coding	4	89	2	2.59025	3.09727	3.60429	0.00217503	5.71664e-4	0.0417893	0.0217398
chr8	123265478	123265577	4041733	0	-	0.232323	[0,0.28]	chr8	368617	79	INTRON	INTRON	ZHX1-C8orf76:ZHX1	ENSG00000259305.6:ENSG00000165156.15	ENST00000357082.8:ENST00000622816.2:ENST00000297857.3:ENST00000395571.8:ENST00000517516.1:ENST00000522655.5:ENST00000522595.5:ENST00000524267.5:ENST00000480132.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	53	2	1.99345	3.097255	4.20106	0.0695895	0.0211881	0.184298	0.123133
chr19	55020023	55020123	7100358	0	+	0.43	(0.408,0.44]	chr19	712212	126	INTRON	INTRON	GP6-AS1	ENSG00000267265.6	ENST00000593060.5:ENST00000586845.1	lncRNA	lncRNA	lncRNA	lncRNA	3	69	2	2.78289	3.097165	3.41144	0.0022785	0.00178336	0.0437013	0.0379201
chr2	48324176	48324276	777414	0	+	0.41	(0.408,0.44]	chr2	87463	90	INTRON	INTRON	FOXN2	ENSG00000170802.17	ENST00000413569.5:ENST00000340553.8	protein_coding	protein_coding	protein_coding	protein_coding	3	69	2	2.78289	3.097165	3.41144	0.0022785	0.00178336	0.0437013	0.0379201
chr5	146143650	146143708	2747002	0	-	0.172414	[0,0.28]	chr5	258816	1	SS3_PROX	SS3_PROX:INTRON	LARS1	ENSG00000133706.19	ENST00000674174.1:ENST00000674170.1:ENST00000674479.1:ENST00000674309.1:ENST00000674218.1:ENST00000674467.1:ENST00000674290.1:ENST00000674447.1:ENST00000674270.1:ENST00000674383.1:ENST00000674191.1:ENST00000674158.1:ENST00000506231.6:ENST00000674471.1:ENST00000394434.7:ENST00000674398.1:ENST00000674277.1:ENST00000274562.13:ENST00000510191.5:ENST00000504323.6:ENST00000674310.1:ENST00000512412.2:ENST00000508667.5:ENST00000507095.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	76	2	2.49527	3.0971349999999997	3.699	0.0436497	6.64135e-4	0.14882	0.0233423
chr17	78780303	78780402	6845816	0	-	0.494949	(0.476,0.515]	chr17	677345	435	INTRON	INTRON	CYTH1	ENSG00000108669.17	ENST00000589296.5:ENST00000361101.8:ENST00000446868.8:ENST00000591455.5:ENST00000591574.5:ENST00000592497.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	34	2	1.86492	3.097035	4.32915	0.0550347	0.0124637	0.165463	0.0973643
chr11	63689069	63689169	4799989	0	+	0.25	[0,0.28]	chr11	444936	69	INTRON	INTRON	RTN3	ENSG00000133318.14	ENST00000341307.6:ENST00000356000.7:ENST00000542238.5:ENST00000538995.1:ENST00000339997.8:ENST00000540798.5:ENST00000537981.5:ENST00000377819.10:ENST00000536011.5:ENST00000543123.1:ENST00000543552.5:ENST00000545432.5:ENST00000338850.5:ENST00000354497.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	40	2	1.8986	3.09698	4.29536	0.0590175	0.0531512	0.179787	0.167915
chr4	1941043	1941140	1911284	0	+	0.278351	[0,0.28]	chr4	191788	14	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	NSD2	ENSG00000109685.19	ENST00000508803.6:ENST00000514045.5:ENST00000398261.6:ENST00000382891.9:ENST00000353275.9:ENST00000382892.6:ENST00000382895.7:ENST00000312087.10:ENST00000420906.6:ENST00000503128.5:ENST00000677559.1:ENST00000512700.2:ENST00000678714.1:ENST00000511904.1:ENST00000513726.5:ENST00000678128.1:ENST00000482415.6:ENST00000514329.5:ENST00000502425.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	40	2	1.8986	3.09698	4.29536	0.0590175	0.0531512	0.179787	0.167915
chr6	13660630	13660730	3058713	0	-	0.23	[0,0.28]	chr6	284542	14	INTRON	INTRON	RANBP9	ENSG00000010017.13	ENST00000011619.6	protein_coding	protein_coding	protein_coding	protein_coding	2	40	2	1.8986	3.09698	4.29536	0.0590175	0.0531512	0.179787	0.167915
chr8	111031328	111031428	4027514	0	-	0.2	[0,0.28]	chr8	367865	35	INTRON	INTRON	LINC01608	ENSG00000253877.6	ENST00000669893.1:ENST00000669744.1	lncRNA	lncRNA	lncRNA	lncRNA	2	40	2	1.8986	3.09698	4.29536	0.0590175	0.0531512	0.179787	0.167915
chrX	3866621	3866721	7747255	0	-	0.51	(0.476,0.515]	chrX	793125	3	SS5_PROX	SS5_PROX:INTRON	ENSG00000285756	ENSG00000285756.2	ENST00000648217.1:ENST00000650456.1:ENST00000657698.1:ENST00000661656.1:ENST00000661924.1:ENST00000669719.1:ENST00000655273.1:ENST00000456563.1:ENST00000650538.1:ENST00000438107.1	lncRNA	lncRNA	lncRNA	lncRNA	7	143	2	2.64921	3.096965	3.54472	3.31596e-4	4.7567e-5	0.0168836	0.00563122
chr2	187544937	187545037	1289431	0	-	0.52	(0.515,0.57]	chr2	135626	3	SS3_PROX	SS3_PROX:INTRON	TFPI	ENSG00000003436.16	ENST00000233156.9:ENST00000409676.5:ENST00000339091.8:ENST00000421427.5:ENST00000437725.5:ENST00000453013.5:ENST00000417013.5:ENST00000420747.1	protein_coding	protein_coding	protein_coding	protein_coding	4	72	2	2.4745	3.09696	3.71942	0.00279583	2.61221e-4	0.0469265	0.014326
chr12	132690973	132691071	5251809	0	+	0.316327	(0.28,0.32]	chr12	499550	2	INTRON	INTRON	PXMP2	ENSG00000176894.10	ENST00000317479.8:ENST00000543589.5:ENST00000539093.2:ENST00000428960.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	53	2	1.76048	3.09694	4.4334	0.0450149	0.0163355	0.149888	0.109464
chr19	7937230	7937329	7130261	0	-	0.414141	(0.408,0.44]	chr19	718334	16	INTRON	INTRON	TIMM44	ENSG00000104980.8	ENST00000270538.8:ENST00000595831.5:ENST00000595876.5:ENST00000597926.1:ENST00000600748.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	52	2	3.08738	3.096895	3.10641	0.00555646	0.00478231	0.0648867	0.0636201
chr4	109503234	109503333	2019270	0	+	0.494949	(0.476,0.515]	chr4	200784	80	INTRON	INTRON	SEC24B	ENSG00000138802.11	ENST00000504968.6:ENST00000399100.6:ENST00000265175.5	protein_coding	protein_coding	protein_coding	protein_coding	2	52	2	2.69967	3.09689	3.49411	0.0195838	9.23453e-4	0.109483	0.0278392
chr14	103447722	103447822	5826259	0	+	0.45	(0.44,0.476]	chr14	552839	58	INTRON	INTRON	MARK3	ENSG00000075413.19	ENST00000678179.1:ENST00000676838.1:ENST00000677348.1:ENST00000677404.1:ENST00000676694.1:ENST00000676938.1:ENST00000678619.1:ENST00000676897.1:ENST00000677214.1:ENST00000677942.1:ENST00000676830.1:ENST00000678999.1:ENST00000677228.1:ENST00000556744.2:ENST00000677104.1:ENST00000679330.1:ENST00000560417.6:ENST00000440884.7:ENST00000676475.1:ENST00000677035.1:ENST00000678022.1:ENST00000677560.1:ENST00000561314.6:ENST00000429436.7:ENST00000677118.1:ENST00000676564.1:ENST00000678169.1:ENST00000678175.1:ENST00000678897.1:ENST00000678278.1:ENST00000676645.1:ENST00000677829.1:ENST00000678302.1:ENST00000677133.1:ENST00000561164.2:ENST00000558223.6:ENST00000559328.6:ENST00000678207.1:ENST00000677360.1:ENST00000676905.1:ENST00000678343.1:ENST00000677347.1:ENST00000678071.1:ENST00000677432.1:ENST00000678237.1:ENST00000677604.1:ENST00000676518.1:ENST00000677051.1:ENST00000677857.1:ENST00000677869.1:ENST00000678423.1:ENST00000560603.6:ENST00000416682.6:ENST00000303622.13:ENST00000216288.11:ENST00000679105.1:ENST00000553942.5:ENST00000335102.9:ENST00000561225.1:ENST00000678091.1:ENST00000561071.5:ENST00000558698.5:ENST00000559268.5:ENST00000560731.5:ENST00000676745.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	126	2	2.75777	3.09686	3.43595	2.63233e-4	1.37632e-4	0.0143626	0.0106923
chr9	125333707	125333803	4198993	0	+	0.583333	(0.57,1]	chr9	383237	7	INTRON	INTRON	GAPVD1	ENSG00000165219.23	ENST00000497580.5:ENST00000297933.11:ENST00000470056.5:ENST00000394105.6:ENST00000394083.6:ENST00000495955.5:ENST00000467750.5:ENST00000394104.6:ENST00000312123.13:ENST00000431329.5:ENST00000436712.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	48	2	3.09313	3.09653	3.09993	0.00369015	6.63721e-5	0.0535094	0.00675077
chr3	195678254	195678348	1593639	0	+	0.404255	(0.378,0.408]	chr3	165060	3	SS5_PROX	SS5_PROX:INTRON	MUC20-OT1	ENSG00000242086.8	ENST00000429897.5:ENST00000445430.5:ENST00000631288.2:ENST00000600527.5	lncRNA	lncRNA	lncRNA	lncRNA	4	96	2	3.03888	3.096515	3.15415	0.00102794	4.11608e-4	0.029231300000000002	0.0181365
chr11	108071545	108071640	4856363	0	+	0.484211	(0.476,0.515]	chr11	452909	10	INTRON	INTRON	CUL5	ENSG00000166266.14	ENST00000393094.7:ENST00000531427.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	52	2	2.94692	3.0964400000000003	3.24596	0.00794331	0.00322919	0.0797304	0.0507087
chr16	23419027	23419127	6463740	0	-	0.45	(0.44,0.476]	chr16	623764	2	SS3_PROX	SS3_PROX:INTRON	COG7	ENSG00000168434.13	ENST00000307149.10	protein_coding	protein_coding	protein_coding	protein_coding	7	59	2	1.36075	3.0963849999999997	4.83202	0.0389168	0.00525002	0.160783	0.0633615
chr15	101970031	101970130	6117555	0	+	0.565657	(0.515,0.57]	chr15	582296	34	INTRON	INTRON	WASH3P	ENSG00000185596.16	ENST00000558686.5:ENST00000354296.9:ENST00000559163.6:ENST00000557932.5:ENST00000558784.5:ENST00000560956.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	4	79	2	3.02819	3.0963700000000003	3.16455	7.81057e-4	3.23741e-4	0.0257168	0.0159645
chr1	21933758	21933857	398126	0	-	0.606061	(0.57,1]	chr1	47777	371	INTRON	INTRON	HSPG2	ENSG00000142798.20	ENST00000374695.8	protein_coding	protein_coding	protein_coding	protein_coding	2	21	2	2.02391	3.09636	4.16881	0.0339274	0.00574776	0.134508	0.0681402
chr5	138353487	138353586	2494859	0	+	0.585859	(0.57,1]	chr5	238471	1	INTRON	INTRON	KDM3B	ENSG00000120733.14	ENST00000314358.10	protein_coding	protein_coding	protein_coding	protein_coding	2	21	2	2.02391	3.09636	4.16881	0.0339274	0.00574776	0.134508	0.0681402
chr9	94173567	94173667	4161142	0	+	0.37	(0.35,0.378]	chr9	379417	68	INTRON	INTRON	MIRLET7A1HG	ENSG00000269929.4	ENST00000652769.1:ENST00000652620.1:ENST00000602703.1:ENST00000660581.1	lncRNA	lncRNA	lncRNA	lncRNA	3	75	2	3.02027	3.096355	3.17244	0.00487788	8.40802e-4	0.0607461	0.0263691
chr1	113099185	113099285	188365	0	+	0.47	(0.44,0.476]	chr1	20895	4	SS5_PROX	SS5_PROX:INTRON	LRIG2	ENSG00000198799.12	ENST00000361127.6:ENST00000466069.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	71	2	2.19078	3.09635	4.00192	0.0226089	7.32704e-5	0.117489	0.00714177
chr1	31001181	31001280	412245	0	-	0.40404	(0.378,0.408]	chr1	49713	56	INTRON	INTRON	PUM1	ENSG00000134644.16	ENST00000426105.7:ENST00000373747.7:ENST00000257075.9:ENST00000424085.6:ENST00000525843.5:ENST00000440538.6:ENST00000373741.8:ENST00000373742.6:ENST00000526215.5:ENST00000525948.5:ENST00000480602.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	72	2	2.63057	3.096325	3.56208	0.0053733	6.94246e-4	0.0642754	0.0240761
chr5	139316688	139316776	2499619	0	+	0.488636	(0.476,0.515]	chr5	238934	1	SS3_PROX	SS3_PROX:INTRON	MATR3	ENSG00000280987.4:ENSG00000015479.20	ENST00000509990.5:ENST00000361059.7:ENST00000394800.6:ENST00000502929.5:ENST00000504203.5:ENST00000509644.5:ENST00000512876.5:ENST00000513678.5:ENST00000504045.5:ENST00000504311.5:ENST00000502499.5:ENST00000510056.5:ENST00000511249.5:ENST00000394805.8:ENST00000509918.5:ENST00000503811.5:ENST00000511978.5:ENST00000618441.5:ENST00000514528.5:ENST00000504643.5:ENST00000515833.2:ENST00000505625.5:ENST00000511333.5:ENST00000502422.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	174	2	2.89208	3.09625	3.30042	4.83014e-4	3.48512e-6	0.0203603	0.00120947
chr1	20754969	20755069	389535	0	-	0.32	(0.28,0.32]	chr1	46531	47	INTRON	INTRON	HP1BP3	ENSG00000127483.19	ENST00000438032.6:ENST00000312239.10:ENST00000375003.6:ENST00000419948.5	protein_coding	protein_coding	protein_coding	protein_coding	5	119	2	2.3365	3.0962449999999997	3.85599	0.00286158	4.63052e-4	0.0494641	0.0198709
chr2	181003035	181003135	936196	0	+	0.37	(0.35,0.378]	chr2	102627	131	INTRON	INTRON	UBE2E3	ENSG00000170035.16	ENST00000602303.5:ENST00000602959.5:ENST00000602479.5:ENST00000392415.6:ENST00000602291.5:ENST00000410062.9:ENST00000602499.5:ENST00000602710.5:ENST00000602762.5:ENST00000602888.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	40	2	1.71046	3.09615	4.48184	0.0441269	0.0191702	0.162255	0.108861
chr4	57007795	57007893	1964231	0	+	0.387755	(0.378,0.408]	chr4	197152	4	INTRON	INTRON	POLR2B	ENSG00000047315.17	ENST00000381227.5:ENST00000431623.6:ENST00000441246.6:ENST00000314595.6	protein_coding	protein_coding	protein_coding	protein_coding	5	118	2	2.33619	3.0961100000000004	3.85603	0.00607113	7.26848e-6	0.0676501	0.00191587
chr1	19146606	19146665	386131	0	-	0.288136	(0.28,0.32]	chr1	45882	1	SS5_PROX	SS5_PROX:INTRON	UBR4	ENSG00000127481.15	ENST00000375254.8:ENST00000425413.5:ENST00000417040.1	protein_coding	protein_coding	protein_coding	protein_coding	4	52	2	1.60333	3.09604	4.58875	0.0413158	0.0230574	0.161534	0.118056
chr12	70262572	70262672	5166623	0	+	0.29	(0.28,0.32]	chr12	489374	179	INTRON	INTRON	CNOT2	ENSG00000111596.14	ENST00000547780.5:ENST00000418359.7:ENST00000552319.5:ENST00000550160.5:ENST00000551661.5:ENST00000551132.5:ENST00000553078.5:ENST00000548021.5:ENST00000550641.6:ENST00000229195.8:ENST00000552915.5:ENST00000549443.5:ENST00000548741.5:ENST00000552483.5:ENST00000552422.5:ENST00000551179.1:ENST00000547321.5:ENST00000553020.5:ENST00000548159.5:ENST00000549750.5:ENST00000551043.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	58	2	1.45717	3.095955	4.73474	0.0472947	0.0162835	0.16913	0.101453
chr8	102379906	102380006	4012428	0	-	0.41	(0.408,0.44]	chr8	367237	179	INTRON	INTRON	UBR5	ENSG00000104517.13	ENST00000520539.6:ENST00000220959.8:ENST00000521922.5	protein_coding	protein_coding	protein_coding	protein_coding	4	43	2	1.43792	3.09595	4.75398	0.062843	0.00703931	0.196433	0.0718189
chr16	23642090	23642181	6323240	0	+	0.527473	(0.515,0.57]	chr16	605580	1	INTRON	INTRON	DCTN5	ENSG00000166847.10	ENST00000300087.7:ENST00000563998.5:ENST00000566053.5:ENST00000568589.5:ENST00000563188.5:ENST00000568272.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	150	2	2.97398	3.095945	3.21791	5.90767e-5	1.80134e-5	0.00631069	0.00345191
chr9	137740974	137741074	4224712	0	+	0.54	(0.515,0.57]	chr9	388235	18	INTRON	INTRON	EHMT1	ENSG00000181090.21	ENST00000462484.5:ENST00000371394.6:ENST00000460843.6:ENST00000629335.2:ENST00000636027.1:ENST00000637161.1:ENST00000637261.1:ENST00000637977.1:ENST00000626066.2:ENST00000638071.1:ENST00000495657.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	97	2	3.02733	3.09594	3.16455	3.23741e-4	1.80662e-4	0.0159645	0.0121878
chr19	52076600	52076672	7205672	0	-	0.430556	(0.408,0.44]	chr19	731290	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ZNF432:ZNF841	ENSG00000256087.7:ENSG00000197608.12	ENST00000598446.1:ENST00000594440.6:ENST00000426391.6:ENST00000594295.5:ENST00000389534.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	86	2	2.99147	3.095905	3.20034	0.00398025	2.05062e-4	0.0549214	0.0124557
chr7	74967497	74967597	3336402	0	+	0.44	(0.408,0.44]	chr7	310570	20	INTRON	INTRON	CASTOR2	ENSG00000274070.2	ENST00000616305.2	protein_coding	protein_coding	protein_coding	protein_coding	4	85	2	2.00629	3.09574	4.18519	0.0189661	2.59215e-5	0.108861	0.00400663
chr16	88919272	88919372	6540718	0	-	0.49	(0.476,0.515]	chr16	634096	169	INTRON	INTRON	CBFA2T3	ENSG00000129993.15	ENST00000268679.9:ENST00000327483.9:ENST00000569464.5:ENST00000569443.5:ENST00000563640.1:ENST00000564416.1:ENST00000570046.1	protein_coding	protein_coding	protein_coding	protein_coding	3	70	2	2.84068	3.0956349999999997	3.35059	0.00217133	0.00171515	0.0417893	0.0381936
chr11	62670867	62670960	4960531	0	-	0.483871	(0.476,0.515]	chr11	466657	10	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	LBHD1	ENSG00000162194.13	ENST00000354588.8:ENST00000431002.6:ENST00000532208.5:ENST00000415855.6:ENST00000527679.5:ENST00000524759.1:ENST00000528862.2:ENST00000377954.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	17	261	2	2.19854	3.09559	3.99264	2.74597e-4	2.81371e-6	0.0151818	0.00107271
chr12	74107577	74107677	5366514	0	-	0.37	(0.35,0.378]	chr12	512080	1650	INTRON	INTRON	LINC02882	ENSG00000251138.7	ENST00000663261.1:ENST00000665907.1:ENST00000669556.1:ENST00000653134.1	lncRNA	lncRNA	lncRNA	lncRNA	4	91	2	2.32061	3.095515	3.87042	0.00545884	2.9524e-4	0.0669938	0.0159581
chr7	111196313	111196413	3620445	0	-	0.33	(0.32,0.35]	chr7	337093	2324	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	132	2	2.93133	3.095435	3.25954	5.89873e-4	2.88334e-4	0.0225024	0.0150627
chr1	1877267	1877367	362703	0	-	0.38	(0.378,0.408]	chr1	42311	372	INTRON	INTRON	GNB1	ENSG00000078369.18	ENST00000610897.4:ENST00000615252.4:ENST00000378609.9:ENST00000439272.6:ENST00000434686.6:ENST00000472614.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	132	2	2.37499	3.09538	3.81577	0.00259953	9.40567e-6	0.0454353	0.00222163
chr1	32835828	32835924	66752	0	+	0.385417	(0.378,0.408]	chr1	8568	11	EXON_LNCRNA	EXON_LNCRNA:INTRON	S100PBP	ENSG00000116497.18	ENST00000373476.5:ENST00000531123.5:ENST00000356689.7:ENST00000373475.10	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	26	2	2.2259	3.095305	3.96471	0.0662381	0.032421	0.181924	0.145026
chr10	50370016	50370116	4618145	0	-	0.39	(0.378,0.408]	chr10	425422	253	INTRON	INTRON	SGMS1	ENSG00000198964.14	ENST00000429490.5:ENST00000361781.7:ENST00000619438.4:ENST00000492601.2:ENST00000609445.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	26	2	2.2259	3.095305	3.96471	0.0662381	0.032421	0.181924	0.145026
chr17	82583512	82583612	6693250	0	+	0.39	(0.378,0.408]	chr17	654659	1	SS3_PROX	SS3_PROX:INTRON	FOXK2	ENSG00000141568.21	ENST00000473637.6:ENST00000335255.10:ENST00000526383.2:ENST00000571160.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	26	2	2.2259	3.095305	3.96471	0.0662381	0.032421	0.181924	0.145026
chr2	9415350	9415449	1063697	0	-	0.383838	(0.378,0.408]	chr2	113418	7	INTRON	INTRON	ITGB1BP1	ENSG00000119185.13	ENST00000355346.9:ENST00000360635.7:ENST00000238091.8:ENST00000483795.5:ENST00000490426.5:ENST00000497031.5:ENST00000464228.5:ENST00000359712.7:ENST00000488451.5:ENST00000456913.6:ENST00000482798.5:ENST00000492079.5:ENST00000463190.1:ENST00000494563.5:ENST00000467606.5:ENST00000484735.5:ENST00000460001.5:ENST00000497105.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	26	2	2.2259	3.095305	3.96471	0.0662381	0.032421	0.181924	0.145026
chr2	33123320	33123419	737225	0	+	0.393939	(0.378,0.408]	chr2	84888	122	INTRON	INTRON	LTBP1	ENSG00000049323.16	ENST00000404816.7	protein_coding	protein_coding	protein_coding	protein_coding	1	26	2	2.2259	3.095305	3.96471	0.0662381	0.032421	0.181924	0.145026
chr22	20839330	20839430	7559489	0	-	0.4	(0.378,0.408]	chr22	773216	2	INTRON	INTRON	PI4KA	ENSG00000241973.11	ENST00000255882.11:ENST00000485963.5:ENST00000449120.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	26	2	2.2259	3.095305	3.96471	0.0662381	0.032421	0.181924	0.145026
chr3	9988611	9988704	1361984	0	+	0.397849	(0.378,0.408]	chr3	143387	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	EMC3-AS1	ENSG00000180385.9	ENST00000692142.1:ENST00000366264.6:ENST00000693066.1:ENST00000326237.3:ENST00000440568.1:ENST00000438698.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	1	26	2	2.2259	3.095305	3.96471	0.0662381	0.032421	0.181924	0.145026
chr6	156785565	156785665	3007237	0	+	0.4	(0.378,0.408]	chr6	281094	57	INTRON	INTRON	ARID1B	ENSG00000049618.24	ENST00000346085.10:ENST00000636930.2:ENST00000647938.1:ENST00000350026.10:ENST00000674298.1:ENST00000674190.1:ENST00000636748.1:ENST00000494260.2:ENST00000637910.1:ENST00000636607.1:ENST00000414678.7:ENST00000638000.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	26	2	2.2259	3.095305	3.96471	0.0662381	0.032421	0.181924	0.145026
chr9	37574421	37574521	4251671	0	-	0.4	(0.378,0.408]	chr9	391555	323	INTRON	INTRON	FBXO10	ENSG00000147912.13	ENST00000432825.7:ENST00000276960.7:ENST00000541607.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	26	2	2.2259	3.095305	3.96471	0.0662381	0.032421	0.181924	0.145026
chrX	15725986	15726086	7624737	0	+	0.4	(0.378,0.408]	chrX	780717	40	INTRON	INTRON	CA5B	ENSG00000169239.13	ENST00000498004.5	protein_coding	protein_coding	protein_coding	protein_coding	1	26	2	2.2259	3.095305	3.96471	0.0662381	0.032421	0.181924	0.145026
chrX	41838714	41838814	7810281	0	-	0.39	(0.378,0.408]	chrX	796224	511	INTRON	INTRON	CASK	ENSG00000147044.23	ENST00000378163.7:ENST00000378168.8:ENST00000675354.1:ENST00000644347.1:ENST00000421587.8:ENST00000644219.1:ENST00000645566.1:ENST00000645986.2:ENST00000442742.7:ENST00000378158.6:ENST00000378154.3:ENST00000378166.9:ENST00000646120.2:ENST00000643831.2:ENST00000647118.2:ENST00000642361.2:ENST00000644770.1:ENST00000468986.7:ENST00000477823.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	26	2	2.2259	3.095305	3.96471	0.0662381	0.032421	0.181924	0.145026
chr1	8759332	8759432	373201	0	-	0.44	(0.408,0.44]	chr1	43549	56	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000656437.1:ENST00000659924.1	protein_coding	protein_coding	protein_coding	protein_coding	4	86	2	2.59487	3.095255	3.59564	0.00202403	5.73354e-4	0.04086	0.0217398
chr15	65172958	65173058	6206478	0	-	0.46	(0.44,0.476]	chr15	592133	58	INTRON	INTRON	CLPX	ENSG00000166855.9	ENST00000300107.7:ENST00000559152.5:ENST00000558958.1:ENST00000559218.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	31	2	1.85146	3.095225	4.33899	0.0545846	0.0206616	0.182529	0.110999
chr17	60611402	60611501	6644579	0	+	0.454545	(0.44,0.476]	chr17	648916	63	INTRON	INTRON	PPM1D	ENSG00000170836.13	ENST00000305921.8:ENST00000693102.1:ENST00000685212.1:ENST00000693196.1:ENST00000392995.7:ENST00000685582.1:ENST00000688505.1:ENST00000629650.3:ENST00000687355.1:ENST00000686064.1:ENST00000689445.1:ENST00000590418.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	31	2	1.85146	3.095225	4.33899	0.0545846	0.0206616	0.182529	0.110999
chr2	65090390	65090482	1142564	0	-	0.467391	(0.44,0.476]	chr2	122168	10	INTRON	INTRON	RAB1A	ENSG00000138069.18	ENST00000649427.1:ENST00000494188.1:ENST00000409784.8:ENST00000409892.5:ENST00000409751.1:ENST00000398529.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	31	2	1.85146	3.095225	4.33899	0.0545846	0.0206616	0.182529	0.110999
chr5	71472881	71472981	2383750	0	+	0.45	(0.44,0.476]	chr5	229887	20	INTRON	INTRON	BDP1	ENSG00000145734.20	ENST00000358731.9:ENST00000508917.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	31	2	1.85146	3.095225	4.33899	0.0545846	0.0206616	0.182529	0.110999
chr9	123922992	123923092	4345955	0	-	0.45	(0.44,0.476]	chr9	399137	436	INTRON	INTRON	DENND1A	ENSG00000119522.17	ENST00000373624.6:ENST00000394215.7:ENST00000373620.7:ENST00000373618.1	protein_coding	protein_coding	protein_coding	protein_coding	2	31	2	1.85146	3.095225	4.33899	0.0545846	0.0206616	0.182529	0.110999
chr1	9679181	9679281	18147	0	+	0.52	(0.515,0.57]	chr1	1682	270	INTRON	INTRON	PIK3CD	ENSG00000171608.17	ENST00000377346.9:ENST00000628140.2	protein_coding	protein_coding	protein_coding	protein_coding	2	30	2	1.79136	3.09518	4.399	0.0638444	0.00708863	0.177811	0.0754923
chr11	591567	591667	4719726	0	+	0.54	(0.515,0.57]	chr11	436181	1	SS5_PROX	SS5_PROX:INTRON	PHRF1	ENSG00000070047.13	ENST00000264555.10:ENST00000416188.3:ENST00000534320.5:ENST00000413872.6:ENST00000533464.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	30	2	1.79136	3.09518	4.399	0.0638444	0.00708863	0.177811	0.0754923
chr22	23193677	23193777	7483335	0	+	0.52	(0.515,0.57]	chr22	763531	111	INTRON	INTRON	BCR	ENSG00000186716.21	ENST00000479188.5:ENST00000359540.7:ENST00000305877.13	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	30	2	1.79136	3.09518	4.399	0.0638444	0.00708863	0.177811	0.0754923
chr16	66732252	66732334	6502037	0	-	0.341463	(0.32,0.35]	chr16	629012	4	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	DYNC1LI2	ENSG00000135720.13	ENST00000258198.7:ENST00000443351.6:ENST00000567499.5:ENST00000564833.5:ENST00000565532.5:ENST00000440564.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	206	2	2.44701	3.095145	3.74328	2.29364e-4	4.56493e-5	0.013345	0.00584267
chr22	41254894	41254994	7590831	0	-	0.52	(0.515,0.57]	chr22	777324	4	SS3_PROX	SS3_PROX:INTRON	RANGAP1	ENSG00000100401.20	ENST00000356244.8:ENST00000405486.5:ENST00000455915.6	protein_coding	protein_coding	protein_coding	protein_coding	4	73	2	2.60978	3.095065	3.58035	0.00151689	5.21239e-4	0.0352794	0.0204523
chr14	81177935	81178035	5935460	0	-	0.32	(0.28,0.32]	chr14	564109	26	UTR3	UTR3:EXON_MRNA	GTF2A1	ENSG00000165417.12	ENST00000553612.6	protein_coding	protein_coding	protein_coding	protein_coding	3	45	2	1.76378	3.09504	4.4263	0.0395495	0.0330296	0.161534	0.133816
chr9	123207086	123207186	4339862	0	-	0.32	(0.28,0.32]	chr9	398947	224	INTRON	INTRON	STRBP	ENSG00000165209.19	ENST00000348403.10:ENST00000360998.3:ENST00000407982.6:ENST00000479114.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	45	2	1.76378	3.09504	4.4263	0.0395495	0.0330296	0.161534	0.133816
chr10	48042127	48042226	4609548	0	-	0.464646	(0.44,0.476]	chr10	424706	27	INTRON	INTRON	ENSG00000289444	ENSG00000289444.1	ENST00000687180.1	lncRNA	lncRNA	lncRNA	lncRNA	3	38	2	1.75627	3.09502	4.43377	0.0380723	0.0162803	0.157702	0.101453
chrX	10994025	10994125	7757329	0	-	0.46	(0.44,0.476]	chrX	793381	231	INTRON	INTRON	HCCS-DT	ENSG00000234129.9	ENST00000669054.1:ENST00000608176.5:ENST00000658066.1:ENST00000608576.5:ENST00000690117.1:ENST00000433747.6	lncRNA	lncRNA	lncRNA	lncRNA	2	35	2	1.96602	3.0949750000000003	4.22393	0.0426807	0.0162322	0.148082	0.109464
chr7	105143790	105143882	3601437	0	-	0.423913	(0.408,0.44]	chr7	336089	6	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	SRPK2	ENSG00000135250.17	ENST00000393651.8:ENST00000357311.7:ENST00000466917.1:ENST00000485455.1:ENST00000489828.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	69	2	2.94481	3.0949549999999997	3.2451	0.00337792	0.00110214	0.0516884	0.03038
chr12	111412843	111412943	5227655	0	+	0.48	(0.476,0.515]	chr12	495486	62	INTRON	INTRON	SH2B3	ENSG00000111252.11	ENST00000341259.7	protein_coding	protein_coding	protein_coding	protein_coding	2	51	2	2.9435	3.0949	3.2463	0.00929849	0.00262374	0.0817766	0.0470772
chr1	90995562	90995662	502263	0	-	0.38	(0.378,0.408]	chr1	59504	128	INTRON	INTRON	ZNF644	ENSG00000122482.22	ENST00000370440.5:ENST00000337393.10:ENST00000347275.9:ENST00000361321.5:ENST00000467231.5:ENST00000498303.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	71	2	2.86955	3.094855	3.32016	0.00268328	0.00159247	0.0464781	0.0367961
chr1	222582940	222583038	641800	0	-	0.510204	(0.476,0.515]	chr1	75732	27	INTRON	INTRON	TAF1A	ENSG00000143498.18	ENST00000350027.8:ENST00000366890.5:ENST00000352967.9:ENST00000391883.2:ENST00000487009.5:ENST00000465263.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	51	2	2.99852	3.094855	3.19119	0.0077575	0.00325748	0.0757402	0.0524329
chr12	104320253	104320337	5210351	0	+	0.380952	(0.378,0.408]	chr12	493248	3	INTRON	INTRON	TXNRD1	ENSG00000198431.17	ENST00000525566.6:ENST00000503506.6:ENST00000526691.5:ENST00000526390.5:ENST00000529546.5:ENST00000529751.1:ENST00000524698.5:ENST00000527688.5:ENST00000526950.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	71	2	2.86955	3.094855	3.32016	0.00268328	0.00159247	0.0464781	0.0367961
chr5	134215392	134215492	2726585	0	-	0.49	(0.476,0.515]	chr5	256558	89	INTRON	INTRON	PPP2CA	ENSG00000113575.10	ENST00000481195.6:ENST00000522385.1:ENST00000523082.1:ENST00000231504.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	51	2	2.99852	3.094855	3.19119	0.0077575	0.00325748	0.0757402	0.0524329
chr7	131101970	131102070	3642619	0	-	0.49	(0.476,0.515]	chr7	338763	136	INTRON	INTRON	LINC-PINT	ENSG00000231721.7	ENST00000647388.1:ENST00000423414.5:ENST00000433079.5:ENST00000642156.1:ENST00000646429.1:ENST00000451786.5:ENST00000645248.1:ENST00000642602.1:ENST00000644804.1:ENST00000647288.1:ENST00000643135.1:ENST00000643855.1:ENST00000643874.1:ENST00000644188.1:ENST00000431189.1:ENST00000642483.1:ENST00000429901.2	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	2	51	2	2.99852	3.094855	3.19119	0.0077575	0.00325748	0.0757402	0.0524329
chr1	197135935	197136032	613599	0	-	0.412371	(0.408,0.44]	chr1	72668	3	INTRON	INTRON	ASPM	ENSG00000066279.19	ENST00000367409.9:ENST00000680265.1:ENST00000294732.11:ENST00000680710.1:ENST00000681879.1:ENST00000680112.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	69	2	2.73941	3.0948	3.45019	0.002744	0.00152664	0.0484022	0.0353936
chr9	128121866	128121965	4357437	0	-	0.434343	(0.408,0.44]	chr9	400185	7	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	PTGES2	ENSG00000148334.16	ENST00000338961.11:ENST00000277462.9:ENST00000617202.4:ENST00000678916.1:ENST00000678174.1:ENST00000679345.1:ENST00000677980.1:ENST00000677651.1:ENST00000676562.1:ENST00000476655.6:ENST00000493205.6:ENST00000677691.1:ENST00000497109.6:ENST00000496594.5:ENST00000483625.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	69	2	2.73941	3.0948	3.45019	0.002744	0.00152664	0.0484022	0.0353936
chr7	148842581	148842681	3670343	0	-	0.25	[0,0.28]	chr7	340616	52	INTRON	INTRON	EZH2	ENSG00000106462.12	ENST00000683292.1:ENST00000320356.7:ENST00000492143.5:ENST00000478654.5:ENST00000350995.6:ENST00000460911.5:ENST00000683744.1:ENST00000682317.1:ENST00000682263.1:ENST00000684300.1:ENST00000476773.5:ENST00000483967.5:ENST00000498186.5:ENST00000483012.1:ENST00000682401.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	99	2	3.0385	3.09476	3.15102	0.00767596	0.00116412	0.0753665	0.0314524
chr14	44928635	44928733	5883416	0	-	0.336735	(0.32,0.35]	chr14	558226	45	UTR3	UTR3:EXON_MRNA	KLHL28	ENSG00000179454.14	ENST00000396128.9	protein_coding	protein_coding	protein_coding	protein_coding	2	35	2	2.01768	3.0947449999999996	4.17181	0.04531	0.0361337	0.152563	0.149888
chr7	121378210	121378309	3630719	0	-	0.333333	(0.32,0.35]	chr7	337377	57	INTRON	INTRON	FAM3C	ENSG00000196937.11	ENST00000359943.8:ENST00000412653.5:ENST00000426156.1	protein_coding	protein_coding	protein_coding	protein_coding	2	35	2	2.01768	3.0947449999999996	4.17181	0.04531	0.0361337	0.152563	0.149888
chr7	157365807	157365904	3455592	0	+	0.515464	(0.515,0.57]	chr7	323065	22	INTRON	INTRON	DNAJB6	ENSG00000105993.15	ENST00000441561.5:ENST00000429029.6:ENST00000262177.9:ENST00000486083.6:ENST00000417758.5:ENST00000459889.5:ENST00000443280.5:ENST00000488001.5:ENST00000441291.5:ENST00000437030.5:ENST00000412557.5:ENST00000453383.5:ENST00000634080.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	46	2	2.60899	3.09467	3.58035	0.0232669	5.21239e-4	0.118148	0.0204523
chr14	101966542	101966642	5820240	0	+	0.24	[0,0.28]	chr14	551975	12	INTRON	INTRON	DYNC1H1	ENSG00000197102.14	ENST00000360184.10:ENST00000684561.1:ENST00000680313.1:ENST00000679720.1:ENST00000680715.1:ENST00000681283.1:ENST00000681822.1:ENST00000679910.1:ENST00000681574.1:ENST00000645039.2:ENST00000645149.2:ENST00000680200.1:ENST00000680120.1:ENST00000644881.2:ENST00000681066.1:ENST00000680423.1:ENST00000681536.1:ENST00000679486.1:ENST00000681010.1:ENST00000679629.1:ENST00000681123.1:ENST00000680874.1:ENST00000680137.1:ENST00000643508.2:ENST00000680808.1:ENST00000681311.1:ENST00000681859.1:ENST00000643684.1:ENST00000643958.2:ENST00000680001.1:ENST00000681668.1:ENST00000645114.2:ENST00000681751.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	74	2	2.64309	3.0946499999999997	3.54621	0.0308646	0.00124865	0.13151	0.0328543
chr22	49786989	49787089	7602810	0	-	0.53	(0.515,0.57]	chr22	778624	2	SS5_PROX	SS5_PROX:INTRON	BRD1	ENSG00000100425.19	ENST00000404760.6:ENST00000404034.5:ENST00000216267.12:ENST00000438393.5:ENST00000457780.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	45	2	2.98677	3.094585	3.2024	0.00632549	0.00322022	0.0722266	0.0507087
chr15	64988925	64989006	6205724	0	-	0.493827	(0.476,0.515]	chr15	591971	1	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SPG21	ENSG00000090487.11	ENST00000204566.7:ENST00000433215.6:ENST00000561078.5:ENST00000416889.6:ENST00000558765.5:ENST00000557795.5:ENST00000560564.1:ENST00000559677.5:ENST00000558415.5:ENST00000558339.1:ENST00000561088.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	54	2	2.73205	3.09458	3.45711	0.0159328	0.00140905	0.109464	0.0340865
chr3	177172215	177172314	1872196	0	-	0.383838	(0.378,0.408]	chr3	187438	9	INTRON	INTRON	TBL1XR1	ENSG00000177565.18	ENST00000457928.7:ENST00000430069.5:ENST00000673974.1:ENST00000352800.10:ENST00000422442.6:ENST00000428970.5:ENST00000424913.5:ENST00000437738.5:ENST00000431421.5:ENST00000635794.1:ENST00000630796.2:ENST00000450267.5:ENST00000630833.2:ENST00000431674.5:ENST00000422066.5:ENST00000443315.5:ENST00000627825.2:ENST00000427349.5:ENST00000413084.5:ENST00000637137.1:ENST00000491623.2:ENST00000637544.1:ENST00000636187.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	20	427	2	3.09046	3.094575	3.09869	7.2261e-6	4.9766e-7	0.00201824	3.78502e-4
chr1	40207304	40207404	80428	0	+	0.29	(0.28,0.32]	chr1	10431	43	INTRON	INTRON	RLF	ENSG00000117000.9	ENST00000372771.5	protein_coding	protein_coding	protein_coding	protein_coding	3	47	2	1.94591	3.0945549999999997	4.2432	0.0479043	0.0228482	0.153019	0.125519
chr8	129508749	129508849	4060369	0	-	0.35	(0.32,0.35]	chr8	369642	136	INTRON	INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1:ENST00000676273.1:ENST00000667643.1:ENST00000668791.1:ENST00000663716.1:ENST00000663572.1:ENST00000676148.1:ENST00000667962.1:ENST00000674877.1:ENST00000675316.1:ENST00000674656.1:ENST00000446592.7:ENST00000667341.1:ENST00000675186.1:ENST00000652971.1:ENST00000661447.1:ENST00000674863.1:ENST00000675498.1:ENST00000675527.1:ENST00000676108.1:ENST00000657647.1:ENST00000675589.1:ENST00000675913.1:ENST00000675109.1:ENST00000671632.1:ENST00000671311.1:ENST00000676099.1:ENST00000660652.1:ENST00000675522.1:ENST00000675183.1:ENST00000658861.1:ENST00000663991.1:ENST00000675044.1:ENST00000675435.1:ENST00000674639.1:ENST00000676069.1:ENST00000675532.1:ENST00000674762.1:ENST00000523151.6:ENST00000675948.1:ENST00000665364.1:ENST00000657251.1:ENST00000675166.1:ENST00000674883.1:ENST00000675867.1:ENST00000674580.1:ENST00000675393.1:ENST00000520048.1:ENST00000674906.1:ENST00000676030.1:ENST00000670588.1:ENST00000675072.1:ENST00000664936.1:ENST00000652914.1:ENST00000657069.1	lncRNA	lncRNA	lncRNA	lncRNA	18	455	2	2.96544	3.094525	3.22361	6.0512e-6	4.17811e-6	0.00172361	0.00148421
chr12	64443582	64443681	5153301	0	+	0.525253	(0.515,0.57]	chr12	487839	39	INTRON	INTRON	XPOT	ENSG00000184575.12	ENST00000332707.10	protein_coding	protein_coding	protein_coding	protein_coding	6	108	2	2.87879	3.094495	3.3102	1.88344e-4	1.06927e-4	0.012549	0.00876441
chr5	138380835	138380925	2495138	0	+	0.411111	(0.408,0.44]	chr5	238495	8	INTRON	INTRON	KDM3B	ENSG00000120733.14	ENST00000314358.10:ENST00000510866.5:ENST00000512928.1:ENST00000542866.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	111	2	3.06718	3.0944450000000003	3.12171	6.63666e-4	1.33986e-4	0.0234815	0.00998237
chr6	35633325	35633424	3086961	0	-	0.50505	(0.476,0.515]	chr6	288775	127	INTRON	INTRON	FKBP5	ENSG00000096060.15	ENST00000536438.5:ENST00000539068.5:ENST00000357266.9:ENST00000542713.1	protein_coding	protein_coding	protein_coding	protein_coding	2	37	2	2.21677	3.0943899999999998	3.97201	0.030904	0.0207026	0.143385	0.110999
chr7	74659367	74659467	3335263	0	+	0.51	(0.476,0.515]	chr7	310340	9	INTRON	INTRON	GTF2I	ENSG00000263001.8	ENST00000650807.1:ENST00000690345.1:ENST00000613513.1:ENST00000573035.6:ENST00000614986.4:ENST00000620879.4:ENST00000621734.4:ENST00000443166.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	37	2	2.21677	3.0943899999999998	3.97201	0.030904	0.0207026	0.143385	0.110999
chr1	100283147	100283246	172444	0	+	0.363636	(0.35,0.378]	chr1	18762	55	INTRON	INTRON	RTCA	ENSG00000137996.13	ENST00000370128.9:ENST00000260563.4	protein_coding	protein_coding	protein_coding	protein_coding	3	76	2	2.28125	3.094245	3.90724	0.0182271	1.41179e-4	0.107842	0.0102551
chr1	23769261	23769361	401206	0	-	0.37	(0.35,0.378]	chr1	48108	1	SS3_PROX	SS3_PROX:INTRON	ELOA-AS1	ENSG00000236810.7	ENST00000655402.1:ENST00000427796.6:ENST00000686609.1:ENST00000664563.2:ENST00000652963.1:ENST00000692026.1	lncRNA	lncRNA	lncRNA	lncRNA	1	27	2	2.24535	3.09413	3.94291	0.0647516	0.0374229	0.179192	0.155878
chr1	51809901	51809994	454587	0	-	0.365591	(0.35,0.378]	chr1	54532	1	SS5_PROX	SS5_PROX:INTRON	NRDC	ENSG00000078618.23	ENST00000354831.11:ENST00000440943.5:ENST00000539524.5:ENST00000352171.12:ENST00000485608.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	27	2	2.24535	3.09413	3.94291	0.0647516	0.0374229	0.179192	0.155878
chr12	9296804	9296899	5073127	0	+	0.368421	(0.35,0.378]	chr12	479631	15	INTRON	INTRON	ENSG00000111788	ENSG00000111788.10	ENST00000539757.1	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	1	27	2	2.24535	3.09413	3.94291	0.0647516	0.0374229	0.179192	0.155878
chr15	56938587	56938687	6032311	0	+	0.3	(0.28,0.32]	chr15	574663	171	INTRON	INTRON	TCF12	ENSG00000140262.18	ENST00000438423.6:ENST00000267811.9:ENST00000333725.10:ENST00000560190.5:ENST00000559609.5:ENST00000558908.5:ENST00000557843.5:ENST00000557947.5:ENST00000561152.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	87	2	2.47203	3.0940950000000003	3.71616	0.0114089	4.76221e-4	0.0886611	0.0197443
chr4	122153172	122153260	2032541	0	+	0.340909	(0.32,0.35]	chr4	201780	2	INTRON	INTRON	KIAA1109	ENSG00000138688.17	ENST00000679879.1:ENST00000264501.8:ENST00000684987.1:ENST00000693420.1:ENST00000693334.1:ENST00000690536.1:ENST00000388738.8:ENST00000686075.1:ENST00000688884.1:ENST00000688368.1:ENST00000690272.1:ENST00000687476.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	60	2	2.68921	3.09395	3.49869	0.0230336	0.00108004	0.118056	0.0300133
chr21	44968909	44969009	7417752	0	+	0.52	(0.515,0.57]	chr21	756238	4	SS3_PROX	SS3_PROX:INTRON	SLX9	ENSG00000160256.13	ENST00000397826.7:ENST00000458015.1:ENST00000291634.11:ENST00000479127.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	31	2	2.01737	3.09387	4.17037	0.0352218	0.0139194	0.137535	0.10247
chr16	90157532	90157631	6424451	0	+	0.383838	(0.378,0.408]	chr16	617209	197	INTRON	INTRON	FAM157C	ENSG00000260528.6	ENST00000568070.1	lncRNA	lncRNA	lncRNA	lncRNA	4	87	2	2.42594	3.093845	3.76175	0.00428028	2.68579e-4	0.0574861	0.0145349
chr4	1899120	1899217	1910852	0	+	0.391753	(0.378,0.408]	chr4	191729	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	NSD2	ENSG00000109685.19	ENST00000508803.6:ENST00000507820.5:ENST00000508355.5:ENST00000514045.5:ENST00000515806.1:ENST00000398261.6:ENST00000382891.9:ENST00000353275.9:ENST00000382892.6:ENST00000382895.7:ENST00000312087.10:ENST00000420906.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	71	2	2.78867	3.0936950000000003	3.39872	0.00226991	0.0019852	0.0437013	0.0404516
chr16	15366034	15366134	6451032	0	-	0.39	(0.378,0.408]	chr16	621718	4	SS3_PROX	SS3_PROX:INTRON	NPIPA5	ENSG00000183793.14	ENST00000360151.9:ENST00000543801.5:ENST00000534094.1	protein_coding	protein_coding	protein_coding	protein_coding	2	32	2	1.97143	3.09353	4.21563	0.0398704	0.0315429	0.161534	0.13151
chr7	102843427	102843526	3590052	0	-	0.383838	(0.378,0.408]	chr7	335153	101	INTRON	INTRON	FBXL13	ENSG00000161040.18	ENST00000694871.1:ENST00000694870.1:ENST00000448002.6:ENST00000379305.7:ENST00000440067.3:ENST00000456695.6:ENST00000313221.8:ENST00000436908.5:ENST00000455112.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	32	2	1.97143	3.09353	4.21563	0.0398704	0.0315429	0.161534	0.13151
chr16	2227197	2227296	6277740	0	+	0.454545	(0.44,0.476]	chr16	600294	29	INTRON	INTRON	E4F1	ENSG00000167967.16	ENST00000565090.5:ENST00000301727.9:ENST00000564139.5:ENST00000562589.5:ENST00000565413.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	94	2	2.25992	3.09352	3.92712	0.00324123	1.7642e-4	0.0524329	0.01216
chr22	21689417	21689512	7482702	0	+	0.326316	(0.32,0.35]	chr22	763393	7	EXON_MRNA	EXON_MRNA:INTRON	PPIL2	ENSG00000100023.20	ENST00000679795.1:ENST00000679540.1:ENST00000679580.1:ENST00000681286.1:ENST00000680061.1:ENST00000681338.1:ENST00000681956.1:ENST00000679827.1:ENST00000679534.1:ENST00000679479.1:ENST00000680393.1:ENST00000680463.1:ENST00000680426.1:ENST00000335025.12:ENST00000498109.2:ENST00000496819.2:ENST00000398831.8:ENST00000681394.1:ENST00000679477.1:ENST00000626352.2:ENST00000417788.5:ENST00000681791.1:ENST00000679692.1:ENST00000680962.1:ENST00000679857.1:ENST00000680094.1:ENST00000680434.1:ENST00000680109.1:ENST00000406385.1:ENST00000681137.1:ENST00000680860.1:ENST00000680183.1:ENST00000446951.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	12	299	2	2.88543	3.093315	3.3012	6.13838e-5	5.56966e-6	0.00691036	0.00163971
chr6	87161523	87161623	2913316	0	+	0.48	(0.476,0.515]	chr6	275276	54	INTRON	INTRON	ZNF292	ENSG00000188994.13	ENST00000392985.3:ENST00000369577.8:ENST00000369578.6:ENST00000518845.1:ENST00000339907.8:ENST00000496806.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	82	2	2.41328	3.09331	3.77334	0.00355364	3.52709e-4	0.0547657	0.0174637
chr7	74180405	74180503	3332286	0	+	0.326531	(0.32,0.35]	chr7	310032	6	INTRON	INTRON	EIF4H	ENSG00000106682.16	ENST00000678438.1:ENST00000489484.5:ENST00000677998.1:ENST00000495187.2:ENST00000265753.13:ENST00000353999.6:ENST00000677570.1:ENST00000677681.1:ENST00000678815.1:ENST00000679266.1:ENST00000679287.1:ENST00000479338.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	61	2	2.90786	3.0932199999999996	3.27858	0.00993008	0.00368368	0.0877296	0.0535094
chr12	50002986	50003080	5322446	0	-	0.37234	(0.35,0.378]	chr12	507371	3	INTRON	INTRON	RACGAP1	ENSG00000161800.13	ENST00000312377.10:ENST00000427314.6:ENST00000454520.6:ENST00000551016.5:ENST00000547905.5:ENST00000548320.5:ENST00000548598.5:ENST00000552310.5:ENST00000548158.1:ENST00000550149.5:ENST00000546786.5:ENST00000546595.5:ENST00000551145.5:ENST00000548824.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	57	2	2.60341	3.093135	3.58286	0.0275785	6.77448e-4	0.123904	0.0236287
chr7	155674313	155674413	3452193	0	+	0.37	(0.35,0.378]	chr7	322654	10	INTRON	INTRON	RBM33	ENSG00000184863.11	ENST00000287912.7:ENST00000401878.8:ENST00000392759.7:ENST00000307403.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	57	2	2.60341	3.093135	3.58286	0.0275785	6.77448e-4	0.123904	0.0236287
chr5	10381003	10381102	2317922	0	+	0.272727	[0,0.28]	chr5	224624	18	INTRON	INTRON	MARCHF6	ENSG00000145495.16	ENST00000274140.10:ENST00000449913.6:ENST00000502795.5:ENST00000511802.5:ENST00000503788.5:ENST00000640713.1:ENST00000510872.5:ENST00000507863.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	137	2	2.61038	3.09312	3.57586	0.00187793	0.00102823	0.039073	0.0294094
chr20	62929006	62929103	7362481	0	-	0.443299	(0.44,0.476]	chr20	751215	5	EXON_LNCRNA	EXON_LNCRNA:INTRON	DIDO1:ENSG00000273759	ENSG00000101191.17:ENSG00000273759.1	ENST00000266070.8:ENST00000370371.8:ENST00000619319.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	7	151	2	3.05288	3.0929599999999997	3.13304	1.45293e-4	4.60603e-5	0.0110154	0.00552588
chr12	9288449	9288549	5073040	0	+	0.32	(0.28,0.32]	chr12	479616	1	SS5_PROX	SS5_PROX:INTRON	ENSG00000111788	ENSG00000111788.10	ENST00000539757.1	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	4	105	2	2.23223	3.0928899999999997	3.95355	0.0109124	1.55324e-4	0.0873034	0.0106835
chr11	76499125	76499225	4836047	0	+	0.47	(0.44,0.476]	chr11	451080	20	INTRON	INTRON	EMSY	ENSG00000158636.17	ENST00000695367.1:ENST00000334736.7:ENST00000524490.5:ENST00000533972.5:ENST00000525038.5:ENST00000524767.5:ENST00000525919.5:ENST00000533248.5:ENST00000529032.5	protein_coding	protein_coding	protein_coding	protein_coding	1	25	2	2.20949	3.0928750000000003	3.97626	0.0672585	0.0300538	0.183051	0.142135
chr16	19077678	19077776	6312682	0	+	0.44898	(0.44,0.476]	chr16	604180	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	COQ7	ENSG00000167186.11	ENST00000321998.10:ENST00000566049.5:ENST00000568985.5:ENST00000569312.5:ENST00000544894.6:ENST00000569127.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	25	2	2.20949	3.0928750000000003	3.97626	0.0672585	0.0300538	0.183051	0.142135
chr16	89784165	89784259	6544476	0	-	0.468085	(0.44,0.476]	chr16	634537	7	INTRON	INTRON	FANCA	ENSG00000187741.16	ENST00000561667.2:ENST00000389301.8:ENST00000568369.6:ENST00000564475.6:ENST00000696275.1:ENST00000696287.1:ENST00000696286.1:ENST00000696274.1:ENST00000696291.1:ENST00000696276.1:ENST00000567205.2:ENST00000567284.7:ENST00000696277.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	25	2	2.20949	3.0928750000000003	3.97626	0.0672585	0.0300538	0.183051	0.142135
chr19	11820172	11820272	7018961	0	+	0.46	(0.44,0.476]	chr19	697799	26	INTRON	INTRON	ZNF440	ENSG00000171295.13	ENST00000304060.10:ENST00000457526.1:ENST00000427505.5:ENST00000588954.5	protein_coding	protein_coding	protein_coding	protein_coding	1	25	2	2.20949	3.0928750000000003	3.97626	0.0672585	0.0300538	0.183051	0.142135
chr2	171384658	171384757	1265511	0	-	0.454545	(0.44,0.476]	chr2	133996	238	INTRON	INTRON	METTL8	ENSG00000123600.21	ENST00000612742.5:ENST00000375258.9:ENST00000447486.5:ENST00000392604.6:ENST00000460188.5:ENST00000392599.6:ENST00000460539.5:ENST00000462821.1:ENST00000442778.5:ENST00000453846.5:ENST00000442541.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	25	2	2.20949	3.0928750000000003	3.97626	0.0672585	0.0300538	0.183051	0.142135
chr20	37188153	37188253	7266222	0	+	0.45	(0.44,0.476]	chr20	738393	34	INTRON	INTRON	RPN2	ENSG00000118705.17	ENST00000456102.5:ENST00000373622.9:ENST00000373632.8:ENST00000237530.11:ENST00000462163.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	25	2	2.20949	3.0928750000000003	3.97626	0.0672585	0.0300538	0.183051	0.142135
chr5	177222077	177222177	2554588	0	+	0.45	(0.44,0.476]	chr5	243958	95	INTRON	INTRON	NSD1	ENSG00000165671.22	ENST00000689549.1:ENST00000354179.9:ENST00000686993.1:ENST00000689326.1:ENST00000439151.7:ENST00000510954.6:ENST00000689345.1:ENST00000347982.9:ENST00000687453.1:ENST00000685206.1:ENST00000688613.1:ENST00000375350.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	25	2	2.20949	3.0928750000000003	3.97626	0.0672585	0.0300538	0.183051	0.142135
chr5	179852117	179852213	2780206	0	-	0.46875	(0.44,0.476]	chr5	262453	3	INTRON	INTRON	MRNIP	ENSG00000161010.16	ENST00000522663.5:ENST00000518235.5:ENST00000520698.5:ENST00000376931.6:ENST00000523084.5:ENST00000292586.11:ENST00000518219.5:ENST00000521299.5:ENST00000521333.5:ENST00000520150.5:ENST00000519208.5:ENST00000523737.5:ENST00000520995.5:ENST00000524068.5:ENST00000522157.5:ENST00000523835.5:ENST00000519213.1:ENST00000519318.5:ENST00000517338.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	25	2	2.20949	3.0928750000000003	3.97626	0.0672585	0.0300538	0.183051	0.142135
chr8	65609784	65609883	3959467	0	-	0.444444	(0.44,0.476]	chr8	363264	39	INTRON	INTRON	ARMC1	ENSG00000104442.10	ENST00000276569.8:ENST00000458464.3:ENST00000528721.5:ENST00000518908.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	25	2	2.20949	3.0928750000000003	3.97626	0.0672585	0.0300538	0.183051	0.142135
chr13	20508959	20509059	5554429	0	-	0.51	(0.476,0.515]	chr13	530849	66	INTRON	INTRON	CRYL1	ENSG00000165475.15	ENST00000643035.1:ENST00000644593.1:ENST00000298248.12:ENST00000382812.5:ENST00000643750.1:ENST00000644153.1:ENST00000643887.1:ENST00000644167.1:ENST00000646414.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	51	2	2.8863	3.0928449999999996	3.29939	0.0111679	0.00211868	0.0877435	0.0425644
chr22	21935770	21935867	7561560	0	-	0.484536	(0.476,0.515]	chr22	773427	17	EXON_MRNA	EXON_MRNA:INTRON	PPM1F	ENSG00000100034.14	ENST00000263212.10:ENST00000407142.5:ENST00000397495.8:ENST00000445205.1:ENST00000623652.1:ENST00000424647.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	51	2	2.8863	3.0928449999999996	3.29939	0.0111679	0.00211868	0.0877435	0.0425644
chr1	204535217	204535317	297610	0	+	0.62	(0.57,1]	chr1	34289	20	INTRON	INTRON	MDM4	ENSG00000198625.14	ENST00000367183.7:ENST00000391947.6:ENST00000454264.6:ENST00000612738.4:ENST00000614459.4:ENST00000616250.4:ENST00000367182.8:ENST00000463049.5:ENST00000470908.5:ENST00000471783.1:ENST00000367180.5:ENST00000507825.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	25	2	1.74185	3.0927550000000004	4.44366	0.0401765	0.00210922	0.143911	0.0425419
chr16	88644566	88644659	6539117	0	-	0.591398	(0.57,1]	chr16	633663	4	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	CYBA	ENSG00000051523.12	ENST00000696156.1:ENST00000696159.1:ENST00000696160.1:ENST00000696157.1:ENST00000696158.1:ENST00000261623.8:ENST00000696163.1:ENST00000696162.1:ENST00000696161.1:ENST00000565588.6:ENST00000566534.5:ENST00000566229.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	25	2	1.74185	3.0927550000000004	4.44366	0.0401765	0.00210922	0.143911	0.0425419
chr3	38228688	38228787	1399190	0	+	0.535354	(0.515,0.57]	chr3	146711	36	INTRON	INTRON	OXSR1	ENSG00000172939.9	ENST00000446845.5:ENST00000311806.8:ENST00000426620.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	71	2	2.69048	3.09272	3.49496	9.61701e-4	8.78655e-4	0.0282401	0.0269932
chr10	68589909	68590009	4441182	0	+	0.41	(0.408,0.44]	chr10	409524	153	INTRON	INTRON	TET1	ENSG00000138336.9	ENST00000373644.5	protein_coding	protein_coding	protein_coding	protein_coding	2	31	2	1.85305	3.092715	4.33238	0.0543543	0.0218901	0.182243	0.11491
chr11	120380401	120380501	4876640	0	+	0.41	(0.408,0.44]	chr11	455798	428	INTRON	INTRON	ARHGEF12	ENSG00000196914.9	ENST00000397843.7:ENST00000356641.7	protein_coding	protein_coding	protein_coding	protein_coding	2	31	2	1.85305	3.092715	4.33238	0.0543543	0.0218901	0.182243	0.11491
chr12	117167676	117167776	5426725	0	-	0.44	(0.408,0.44]	chr12	518429	2	INTRON	INTRON	FBXO21	ENSG00000135108.16	ENST00000622495.5:ENST00000550180.5:ENST00000330622.9	protein_coding	protein_coding	protein_coding	protein_coding	2	31	2	1.85305	3.092715	4.33238	0.0543543	0.0218901	0.182243	0.11491
chr2	28938094	28938194	725630	0	+	0.43	(0.408,0.44]	chr2	83871	1	SS5_PROX	SS5_PROX:INTRON	WDR43	ENSG00000163811.12	ENST00000407426.8:ENST00000446643.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	31	2	1.85305	3.092715	4.33238	0.0543543	0.0218901	0.182243	0.11491
chr6	85544455	85544554	3150421	0	-	0.424242	(0.408,0.44]	chr6	293751	8	UTR3	UTR3:EXON_MRNA:INTRON	ENSG00000271793:SNX14	ENSG00000271793.2:ENSG00000135317.14	ENST00000682083.1:ENST00000683074.1:ENST00000681965.1:ENST00000682171.1:ENST00000684150.1:ENST00000683785.1:ENST00000682497.1:ENST00000684647.1:ENST00000683643.1:ENST00000682023.1:ENST00000682022.1:ENST00000683542.1:ENST00000683126.1:ENST00000683857.1:ENST00000683898.1:ENST00000682854.1:ENST00000682491.1:ENST00000682174.1:ENST00000684239.1:ENST00000682939.1:ENST00000684570.1:ENST00000682057.1:ENST00000682878.1:ENST00000683880.1:ENST00000684422.1:ENST00000682504.1:ENST00000683726.1:ENST00000684680.1:ENST00000683196.1:ENST00000683458.1:ENST00000683803.1:ENST00000684281.1:ENST00000682991.1:ENST00000683754.1:ENST00000683481.1:ENST00000682455.1:ENST00000682034.1:ENST00000684451.1:ENST00000683583.1:ENST00000682776.1:ENST00000683873.1:ENST00000683878.1:ENST00000683195.1:ENST00000682995.1:ENST00000682374.1:ENST00000683698.1:ENST00000682454.1:ENST00000682694.1:ENST00000682412.1:ENST00000682682.1:ENST00000346348.7:ENST00000314673.8:ENST00000682633.1:ENST00000683085.1:ENST00000682688.1:ENST00000684319.1:ENST00000683577.1:ENST00000682709.1:ENST00000684299.1:ENST00000682133.1:ENST00000682594.1:ENST00000683473.1:ENST00000682106.1:ENST00000683364.1:ENST00000683436.1:ENST00000684220.1:ENST00000683909.1:ENST00000684118.1:ENST00000681981.1:ENST00000682738.1:ENST00000509338.6:ENST00000684717.1:ENST00000682660.1:ENST00000683073.1:ENST00000515216.6:ENST00000684581.1:ENST00000683479.1:ENST00000682464.1:ENST00000684108.1:ENST00000682514.1:ENST00000684017.1:ENST00000684273.1:ENST00000513865.5:ENST00000505648.5:ENST00000508980.5:ENST00000369627.6:ENST00000503491.5:ENST00000508658.6:ENST00000683097.1:ENST00000683541.1:ENST00000683759.1:ENST00000369635.7:ENST00000684462.1:ENST00000682168.1:ENST00000513869.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	31	2	1.85305	3.092715	4.33238	0.0543543	0.0218901	0.182243	0.11491
chr6	143718865	143718965	2980254	0	+	0.42	(0.408,0.44]	chr6	279277	63	INTRON	INTRON	PHACTR2	ENSG00000112419.15	ENST00000367584.8:ENST00000427704.6:ENST00000305766.10:ENST00000440869.7:ENST00000367582.7:ENST00000402863.3:ENST00000451827.6:ENST00000542769.5:ENST00000397980.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	31	2	1.85305	3.092715	4.33238	0.0543543	0.0218901	0.182243	0.11491
chr11	12970687	12970787	4915879	0	-	0.48	(0.476,0.515]	chr11	460662	51	INTRON	INTRON	LINC00958	ENSG00000251381.8	ENST00000658243.1:ENST00000527945.2	lncRNA	lncRNA	lncRNA	lncRNA	2	51	2	3.05152	3.092705	3.13389	0.0064848	0.00405473	0.0699952	0.0578376
chr9	112174632	112174732	4316777	0	-	0.38	(0.378,0.408]	chr9	396996	1	SS5_PROX	SS5_PROX:INTRON	SUSD1	ENSG00000106868.17	ENST00000374270.8:ENST00000374263.7:ENST00000355396.7:ENST00000374264.6	protein_coding	protein_coding	protein_coding	protein_coding	2	54	2	2.9917	3.09269	3.19368	0.0068789	0.00426861	0.0749442	0.0573912
chr15	73565155	73565254	6220490	0	-	0.494949	(0.476,0.515]	chr15	593882	15	INTRON	INTRON	NPTN	ENSG00000156642.17	ENST00000351217.10:ENST00000345330.9:ENST00000565325.5:ENST00000562924.5:ENST00000563691.5	protein_coding	protein_coding	protein_coding	protein_coding	2	31	2	1.8388	3.09264	4.34648	0.0564473	0.0193566	0.184423	0.108861
chr16	81481673	81481773	6405366	0	+	0.49	(0.476,0.515]	chr16	615026	358	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8	protein_coding	protein_coding	protein_coding	protein_coding	2	31	2	1.8388	3.09264	4.34648	0.0564473	0.0193566	0.184423	0.108861
chr17	31990967	31991066	6596225	0	+	0.484848	(0.476,0.515]	chr17	641589	21	INTRON	INTRON	SUZ12	ENSG00000178691.11	ENST00000322652.10:ENST00000580398.1	protein_coding	protein_coding	protein_coding	protein_coding	2	31	2	1.8388	3.09264	4.34648	0.0564473	0.0193566	0.184423	0.108861
chr17	64650862	64650962	6817023	0	-	0.48	(0.476,0.515]	chr17	673955	439	INTRON	INTRON	SMURF2	ENSG00000108854.16	ENST00000262435.14:ENST00000582081.5:ENST00000578386.5:ENST00000585301.1:ENST00000578200.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	31	2	1.8388	3.09264	4.34648	0.0564473	0.0193566	0.184423	0.108861
chr18	12644120	12644220	6949154	0	-	0.48	(0.476,0.515]	chr18	687396	79	INTRON	INTRON	SPIRE1	ENSG00000134278.16	ENST00000409402.9:ENST00000410092.7:ENST00000309836.9:ENST00000453447.6:ENST00000449797.5:ENST00000497844.6:ENST00000462226.1	protein_coding	protein_coding	protein_coding	protein_coding	2	31	2	1.8388	3.09264	4.34648	0.0564473	0.0193566	0.184423	0.108861
chr18	12718116	12718216	6876061	0	+	0.48	(0.476,0.515]	chr18	681237	2	SS3_PROX	SS3_PROX:INTRON	PSMG2	ENSG00000128789.21	ENST00000585331.6:ENST00000586445.5:ENST00000590217.5:ENST00000586587.1:ENST00000317615.11	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	31	2	1.8388	3.09264	4.34648	0.0564473	0.0193566	0.184423	0.108861
chr14	30959804	30959902	5857206	0	-	0.326531	(0.32,0.35]	chr14	556504	32	INTRON	INTRON	STRN3	ENSG00000196792.12	ENST00000355683.9:ENST00000357479.10:ENST00000555358.5:ENST00000555152.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	42	2	1.72898	3.092635	4.45629	0.0425433	0.0246089	0.161951	0.12011
chr1	245905140	245905240	674675	0	-	0.45	(0.44,0.476]	chr1	79681	409	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000366517.5:ENST00000366516.5:ENST00000490107.6:ENST00000470510.5:ENST00000493441.5:ENST00000488153.5:ENST00000492487.5:ENST00000391836.3:ENST00000464398.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	83	2	2.35446	3.09258	3.8307	0.00536475	1.81621e-4	0.0642754	0.0117212
chr18	2699439	2699539	6865312	0	+	0.44	(0.408,0.44]	chr18	679999	10	INTRON	INTRON	SMCHD1	ENSG00000101596.17	ENST00000320876.11:ENST00000688342.1:ENST00000684915.1:ENST00000693213.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	38	2	1.75791	3.09252	4.42713	0.0378795	0.0173083	0.157034	0.104099
chr7	148881900	148882000	3670740	0	-	0.49	(0.476,0.515]	chr7	340632	107	INTRON	INTRON	EZH2	ENSG00000106462.12	ENST00000683292.1:ENST00000320356.7:ENST00000492143.5:ENST00000478654.5:ENST00000350995.6:ENST00000460911.5:ENST00000683744.1:ENST00000682317.1:ENST00000682263.1:ENST00000476773.5:ENST00000483967.5:ENST00000498186.5:ENST00000483012.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	16	327	2	2.65678	3.0925000000000002	3.52822	2.22907e-5	7.44523e-7	0.00368183	5.24105e-4
chr6	43180155	43180251	2869858	0	+	0.614583	(0.57,1]	chr6	271845	11	UTR3	UTR3:EXON_MRNA	SRF	ENSG00000112658.8	ENST00000265354.6	protein_coding	protein_coding	protein_coding	protein_coding	4	45	2	2.32017	3.092385	3.8646	0.00488159	8.0672e-5	0.0640618	0.00804467
chr9	91859570	91859670	4284358	0	-	0.54	(0.515,0.57]	chr9	393909	834	INTRON	INTRON	ROR2	ENSG00000169071.15	ENST00000375715.5:ENST00000375708.4:ENST00000550066.5:ENST00000495386.5:ENST00000546883.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	49	2	2.56306	3.09235	3.62164	0.0247751	5.41944e-4	0.131869	0.0215026
chr5	36872450	36872549	2601845	0	-	0.545455	(0.515,0.57]	chr5	247327	12	EXON_LNCRNA	EXON_LNCRNA:INTRON	NIPBL-DT	ENSG00000285967.1	ENST00000647750.1:ENST00000649921.1:ENST00000647824.1	lncRNA	lncRNA	lncRNA	lncRNA	3	36	2	1.49871	3.092195	4.68568	0.0770828	0.00270027	0.196285	0.0479115
chrX	44941883	44941983	7649289	0	+	0.29	(0.28,0.32]	chrX	782726	675	INTRON	INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000675440.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000621147.5:ENST00000475233.1:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	64	2	2.91851	3.09201	3.26551	0.0130672	0.0030714	0.093385	0.0509893
chr16	81463508	81463607	6405184	0	+	0.585859	(0.57,1]	chr16	615026	176	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8	protein_coding	protein_coding	protein_coding	protein_coding	4	49	2	2.9315	3.092	3.2525	9.1984e-4	1.55446e-4	0.0278396	0.0106835
chr10	97755073	97755173	4505479	0	+	0.48	(0.476,0.515]	chr10	414823	15	INTRON	INTRON	ZFYVE27	ENSG00000155256.18	ENST00000337540.11:ENST00000370613.7:ENST00000370610.7:ENST00000357540.8:ENST00000393677.8:ENST00000423811.3:ENST00000684270.1:ENST00000359980.5	protein_coding	protein_coding	protein_coding	protein_coding	2	53	2	2.80729	3.091805	3.37632	0.0126008	0.00195267	0.0980703	0.0400465
chr5	876412	876512	2564453	0	-	0.42	(0.408,0.44]	chr5	245469	2	SS3_PROX	SS3_PROX:INTRON	BRD9	ENSG00000028310.18	ENST00000493082.5:ENST00000467963.6:ENST00000495265.5:ENST00000490814.6:ENST00000495794.5:ENST00000483234.5:ENST00000489816.5:ENST00000483173.5:ENST00000519112.5:ENST00000518251.1:ENST00000475706.5:ENST00000466684.5:ENST00000519838.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	34	2	1.74775	3.091775	4.4358	0.0735403	0.00893097	0.190238	0.0849778
chr2	173120855	173120955	920899	0	+	0.5	(0.476,0.515]	chr2	101411	293	INTRON	INTRON	MAP3K20	ENSG00000091436.17	ENST00000539448.5:ENST00000409176.6:ENST00000468408.5:ENST00000338983.7:ENST00000375213.8:ENST00000476618.5:ENST00000422149.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	69	2	2.73564	3.0917399999999997	3.44784	0.00333144	0.00113238	0.0512081	0.0308465
chr7	158886720	158886820	3456437	0	+	0.51	(0.476,0.515]	chr7	323168	3	SS3_PROX	SS3_PROX:INTRON	DYNC2I1	ENSG00000126870.16	ENST00000407559.8:ENST00000444851.5:ENST00000467220.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	69	2	2.73564	3.0917399999999997	3.44784	0.00333144	0.00113238	0.0512081	0.0308465
chr1	245951535	245951634	675144	0	-	0.444444	(0.44,0.476]	chr1	79699	209	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000366517.5:ENST00000490107.6:ENST00000493441.5:ENST00000488153.5:ENST00000492487.5:ENST00000391836.3:ENST00000464398.1:ENST00000453676.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	110	2	2.90991	3.0917	3.27349	3.20441e-4	3.12677e-4	0.0162569	0.0159645
chr10	124778870	124778969	4712417	0	-	0.262626	[0,0.28]	chr10	434817	37	INTRON	INTRON	EEF1AKMT2	ENSG00000203791.15	ENST00000652548.1:ENST00000466270.5:ENST00000368836.7:ENST00000464099.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	99	2	2.39991	3.09169	3.78347	0.0163416	4.61323e-4	0.101571	0.0194611
chr17	66361231	66361331	6662884	0	+	0.35	(0.32,0.35]	chr17	650324	213	INTRON	INTRON	PRKCA	ENSG00000154229.12	ENST00000413366.8:ENST00000578063.5:ENST00000284384.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	96	2	2.40617	3.09163	3.77709	0.0040507	5.24715e-4	0.0578376	0.0210958
chr20	49285183	49285282	7284673	0	+	0.424242	(0.408,0.44]	chr20	741065	30	INTRON	INTRON	ZFAS1	ENSG00000177410.13	ENST00000371743.8:ENST00000417721.5:ENST00000441722.5:ENST00000450535.5:ENST00000458653.5:ENST00000428008.6:ENST00000620594.2:ENST00000652916.1:ENST00000326677.9:ENST00000659056.1	lncRNA	lncRNA	lncRNA	lncRNA	16	347	2	3.05981	3.091475	3.12314	4.48087e-6	3.30239e-6	0.00142697	0.00128575
chr22	39021112	39021193	7514853	0	+	0.518519	(0.515,0.57]	chr22	767759	1	UTR5	UTR5:EXON_MRNA	APOBEC3D	ENSG00000243811.12	ENST00000427494.6:ENST00000216099.13	protein_coding	protein_coding	protein_coding	protein_coding	3	59	2	2.87626	3.091455	3.30665	0.00213226	0.00136224	0.041756	0.0339121
chr16	58627653	58627752	6496364	0	-	0.40404	(0.378,0.408]	chr16	628651	25	INTRON	INTRON	CNOT1	ENSG00000125107.19	ENST00000317147.10:ENST00000569240.5:ENST00000567188.5:ENST00000441024.6:ENST00000565605.5:ENST00000564557.1:ENST00000569916.1:ENST00000569020.5:ENST00000568158.1:ENST00000569263.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	88	2	2.53753	3.0914099999999998	3.64529	0.00271682	4.71767e-4	0.0467523	0.0196294
chr17	27096813	27096913	6579793	0	+	0.37	(0.35,0.378]	chr17	639585	4	SS5_PROX	SS5_PROX:INTRON	ENSG00000285822	ENSG00000285822.1	ENST00000649401.1	lncRNA	lncRNA	lncRNA	lncRNA	8	169	2	1.99806	3.091345	4.18463	0.00563025	9.58563e-7	0.0653997	5.54959e-4
chr5	62571624	62571724	2364630	0	+	0.31	(0.28,0.32]	chr5	228011	100	INTRON	INTRON	IPO11	ENSG00000086200.17	ENST00000424533.5:ENST00000325324.11:ENST00000409296.7:ENST00000511713.5:ENST00000511133.1:ENST00000413749.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	86	2	2.84671	3.091335	3.33596	0.00342993	0.00216662	0.0517761	0.0434015
chr17	39204744	39204840	6606986	0	+	0.5	(0.476,0.515]	chr17	643252	2	UTR3	UTR3:EXON_MRNA	RPL19	ENSG00000108298.12	ENST00000678147.1:ENST00000678609.1:ENST00000679038.1:ENST00000678012.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	3	49	2	2.21025	3.0911299999999997	3.97201	0.030904	0.00913757	0.143385	0.0812335
chr3	60273526	60273626	1712349	0	-	0.49	(0.476,0.515]	chr3	176138	1928	INTRON	INTRON	FHIT	ENSG00000189283.10	ENST00000492590.6:ENST00000476844.5:ENST00000468189.5:ENST00000488467.5	protein_coding	protein_coding	protein_coding	protein_coding	3	68	2	2.72507	3.0910900000000003	3.45711	0.0029369	0.00140905	0.0496505	0.0340865
chr18	796800	796899	6940551	0	-	0.373737	(0.35,0.378]	chr18	686525	85	INTRON	INTRON	YES1	ENSG00000176105.14	ENST00000584307.5:ENST00000314574.5:ENST00000577611.1:ENST00000581960.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	75	2	2.63527	3.091055	3.54684	0.00443588	0.00119142	0.061054	0.0315806
chr4	88707651	88707750	1997458	0	+	0.444444	(0.44,0.476]	chr4	199368	8	UTR3	UTR3:EXON_MRNA	HERC3	ENSG00000138641.18	ENST00000402738.6:ENST00000264345.7	protein_coding	protein_coding	protein_coding	protein_coding	2	52	2	2.67572	3.09078	3.50584	0.0212064	8.66138e-4	0.113017	0.0266729
chr4	138197020	138197119	2245374	0	-	0.292929	(0.28,0.32]	chr4	219484	114	INTRON	INTRON	SLC7A11	ENSG00000151012.13	ENST00000280612.9:ENST00000509248.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	51	2	1.51776	3.090675	4.66359	0.0528371	0.0193496	0.178899	0.108861
chr22	21851527	21851627	7561225	0	-	0.63	(0.57,1]	chr22	773388	433	INTRON	INTRON	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	5	32	2	1.50683	3.09063	4.67443	0.0378927	8.07515e-4	0.141283	0.0258804
chr1	89867445	89867545	159990	0	+	0.36	(0.35,0.378]	chr1	17285	204	INTRON	INTRON	LRRC8D	ENSG00000171492.14	ENST00000525774.5:ENST00000337338.9:ENST00000394593.7:ENST00000532201.5:ENST00000414841.1:ENST00000527156.1:ENST00000441269.2	protein_coding	protein_coding	protein_coding	protein_coding	2	56	2	2.72497	3.0905899999999997	3.45621	0.0198266	0.0011842	0.109608	0.031662
chr1	161600381	161600470	235518	0	+	0.382022	(0.378,0.408]	chr1	28433	2	INTRON	INTRON	FCGR2C	ENSG00000244682.8	ENST00000467903.5:ENST00000507374.5:ENST00000508651.1	polymorphic_pseudogene	processed_transcript	polymorphic_pseudogene	processed_transcript	14	312	2	3.00934	3.09056	3.17178	7.02533e-6	6.63145e-6	0.00194394	0.00188004
chr17	68883790	68883882	6826858	0	-	0.326087	(0.32,0.35]	chr17	674814	1	CDS	CDS:EXON_MRNA	ABCA8	ENSG00000141338.15	ENST00000586539.6:ENST00000430352.6:ENST00000269080.6:ENST00000586292.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	34	2	1.81328	3.0904149999999997	4.36755	0.0615716	0.0300552	0.193423	0.129138
chr17	67351324	67351421	6825987	0	-	0.381443	(0.378,0.408]	chr17	674605	6	INTRON	INTRON	PSMD12	ENSG00000197170.10	ENST00000356126.8:ENST00000357146.4:ENST00000584008.5:ENST00000584289.5:ENST00000581618.1:ENST00000579365.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	53	2	2.90162	3.090345	3.27907	0.0113157	0.0023379	0.0886121	0.0442989
chr19	16653856	16653945	7150725	0	-	0.382022	(0.378,0.408]	chr19	722455	3	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	SMIM7	ENSG00000214046.9	ENST00000465250.6:ENST00000481671.6:ENST00000594662.5:ENST00000597781.5:ENST00000598278.5:ENST00000593409.5:ENST00000487803.5:ENST00000627144.2:ENST00000487416.7:ENST00000593404.5:ENST00000597711.5:ENST00000599310.5:ENST00000397349.6:ENST00000602194.5:ENST00000600740.5:ENST00000461488.5:ENST00000463051.5:ENST00000358726.6:ENST00000594507.5:ENST00000461364.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	53	2	2.95459	3.09029	3.22599	0.00957623	0.00288652	0.0820838	0.0494641
chr19	4430128	4430208	7002048	0	+	0.45	(0.44,0.476]	chr19	694559	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CHAF1A	ENSG00000167670.16	ENST00000301280.10	protein_coding	protein_coding	protein_coding	protein_coding	2	52	2	2.9586	3.09026	3.22192	0.00758318	0.00360821	0.0773151	0.0533855
chr2	107729046	107729146	1205840	0	-	0.37	(0.35,0.378]	chr2	128532	114	INTRON	INTRON	LINC01885:ENSG00000286769	ENSG00000237880.2:ENSG00000286769.1	ENST00000654481.1:ENST00000669817.1	lncRNA	lncRNA	lncRNA	lncRNA	8	168	2	2.07327	3.09024	4.10721	0.00411159	1.62521e-6	0.0564928	7.71833e-4
chr3	156541031	156541130	1844366	0	-	0.282828	(0.28,0.32]	chr3	185571	16	UTR3	UTR3:EXON_MRNA	SSR3	ENSG00000114850.7	ENST00000265044.7	protein_coding	protein_coding	protein_coding	protein_coding	3	86	2	2.91124	3.08987	3.2685	0.00432734	0.00165124	0.0579331	0.0375241
chr2	26364001	26364101	715190	0	+	0.37	(0.35,0.378]	chr2	82573	3	SS3_PROX	SS3_PROX:INTRON	SELENOI	ENSG00000138018.19	ENST00000442141.5:ENST00000260585.12:ENST00000447170.1	protein_coding	protein_coding	protein_coding	protein_coding	3	81	2	2.72497	3.089805	3.45464	0.0198266	9.07166e-5	0.109608	0.00796627
chr6	109366611	109366709	3185750	0	-	0.326531	(0.32,0.35]	chr6	296652	2	UTR3	UTR3:EXON_MRNA	CD164	ENSG00000135535.17	ENST00000310786.10:ENST00000413644.6:ENST00000504373.2:ENST00000415861.2:ENST00000324953.9:ENST00000275080.11	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	12	299	2	2.81468	3.089805	3.36493	1.37611e-4	1.69877e-6	0.0106923	7.87725e-4
chr1	155735809	155735908	229998	0	+	0.434343	(0.408,0.44]	chr1	27059	34	INTRON	INTRON	DAP3	ENSG00000132676.16	ENST00000471642.6:ENST00000343043.7:ENST00000368336.10:ENST00000535183.5:ENST00000421487.6:ENST00000477394.5:ENST00000475056.5:ENST00000490249.5:ENST00000463295.1	protein_coding	protein_coding	protein_coding	protein_coding	2	52	2	3.02513	3.089635	3.15414	0.0059965	0.00469847	0.0700606	0.0600108
chr11	83030747	83030847	5012937	0	-	0.42	(0.408,0.44]	chr11	472813	603	INTRON	INTRON	ENSG00000254698	ENSG00000254698.1	ENST00000527550.1	lncRNA	lncRNA	lncRNA	lncRNA	2	52	2	3.02513	3.089635	3.15414	0.0059965	0.00469847	0.0700606	0.0600108
chr19	24051900	24051999	7044045	0	+	0.434343	(0.408,0.44]	chr19	702356	21	EXON_LNCRNA	EXON_LNCRNA:INTRON	ENSG00000268362:ZNF254	ENSG00000268362.6:ENSG00000213096.11	ENST00000664647.1:ENST00000613065.4:ENST00000656993.1:ENST00000666101.1:ENST00000653003.1:ENST00000666488.1:ENST00000594934.6:ENST00000654353.1:ENST00000662140.1:ENST00000668060.1:ENST00000660137.1:ENST00000669127.1:ENST00000652968.1:ENST00000670905.1:ENST00000658858.1:ENST00000654594.1:ENST00000654372.1:ENST00000652837.1:ENST00000654611.1:ENST00000597683.1:ENST00000671141.1:ENST00000653308.1:ENST00000659757.1:ENST00000661386.1:ENST00000668656.1:ENST00000663903.1:ENST00000668169.1:ENST00000663458.1:ENST00000662903.1:ENST00000665638.1:ENST00000670058.1:ENST00000668701.1:ENST00000655664.1:ENST00000666861.1:ENST00000664627.1:ENST00000661650.1:ENST00000667700.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	2	52	2	3.02513	3.089635	3.15414	0.0059965	0.00469847	0.0700606	0.0600108
chr19	46874803	46874903	7082373	0	+	0.46	(0.44,0.476]	chr19	708677	132	INTRON	INTRON	ARHGAP35	ENSG00000160007.19	ENST00000672722.1	protein_coding	protein_coding	protein_coding	protein_coding	3	69	2	2.38519	3.08953	3.79387	0.012193	2.19099e-4	0.0910127	0.0129737
chr3	48553407	48553506	1688888	0	-	0.444444	(0.44,0.476]	chr3	172587	28	INTRON	INTRON	PFKFB4	ENSG00000114268.12	ENST00000232375.8:ENST00000490115.5:ENST00000383734.6:ENST00000416568.5:ENST00000417753.5:ENST00000445633.5:ENST00000452531.5:ENST00000412035.5:ENST00000496767.5:ENST00000422701.1:ENST00000467176.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	69	2	2.38519	3.08953	3.79387	0.012193	2.19099e-4	0.0910127	0.0129737
chr7	10498936	10499036	3481768	0	-	0.4	(0.378,0.408]	chr7	325766	458	INTRON	INTRON	MGC4859	ENSG00000283117.1	ENST00000634803.1	lncRNA	lncRNA	lncRNA	lncRNA	7	158	2	2.91763	3.089375	3.26112	1.09828e-4	8.42598e-5	0.0088711	0.00820323
chr10	21608331	21608431	4405160	0	+	0.41	(0.408,0.44]	chr10	406466	125	INTRON	INTRON	MLLT10	ENSG00000078403.17	ENST00000651097.1:ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000650772.1:ENST00000651298.1:ENST00000495130.5:ENST00000377059.7:ENST00000652258.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	85	2	1.96534	3.08936	4.21338	0.0216499	2.19708e-5	0.11491	0.00364987
chr1	155667141	155667239	563092	0	-	0.469388	(0.44,0.476]	chr1	67145	54	INTRON	INTRON	YY1AP1	ENSG00000163374.20	ENST00000368339.9:ENST00000295566.8:ENST00000368330.6:ENST00000436865.5:ENST00000359205.9:ENST00000407221.5:ENST00000404643.5:ENST00000361140.8:ENST00000361831.9:ENST00000347088.9:ENST00000354691.9:ENST00000368340.9:ENST00000311573.9:ENST00000442834.6:ENST00000355499.9:ENST00000405763.7:ENST00000488784.5:ENST00000493625.5:ENST00000477470.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	69	2	2.67282	3.0893300000000004	3.50584	0.00433875	8.66138e-4	0.0579868	0.0266729
chr5	111116032	111116132	2451381	0	+	0.48	(0.476,0.515]	chr5	234859	25	INTRON	INTRON	WDR36	ENSG00000134987.13	ENST00000513710.4	protein_coding	protein_coding	protein_coding	protein_coding	3	69	2	3.07601	3.089325	3.10264	0.00543163	5.95211e-4	0.0645052	0.0221865
chr9	130821853	130821953	4214943	0	+	0.59	(0.57,1]	chr9	386427	1070	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000393293.4	protein_coding	protein_coding	protein_coding	protein_coding	8	80	2	2.35078	3.089305	3.82783	4.76857e-4	3.01424e-6	0.0202392	0.00111586
chr22	17706312	17706411	7475706	0	+	0.323232	(0.32,0.35]	chr22	762190	27	INTRON	INTRON	BCL2L13	ENSG00000099968.18	ENST00000337612.9:ENST00000418951.6:ENST00000538149.5:ENST00000543133.5:ENST00000611738.4:ENST00000616863.4:ENST00000618481.4:ENST00000498133.5:ENST00000317582.10:ENST00000355028.4:ENST00000399777.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	59	2	2.9451	3.0892049999999998	3.23331	0.011051	0.00315414	0.0873897	0.0515261
chrX	71550222	71550321	7680120	0	+	0.323232	(0.32,0.35]	chrX	786405	18	INTRON	INTRON	OGT	ENSG00000147162.14	ENST00000373719.8:ENST00000488174.5:ENST00000373701.7:ENST00000455587.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	49	2	1.63843	3.089155	4.53988	0.0360919	0.0202178	0.152563	0.109913
chr2	202237343	202237443	1315062	0	-	0.48	(0.476,0.515]	chr2	137925	33	INTRON	INTRON	SUMO1	ENSG00000116030.17	ENST00000392246.7:ENST00000392245.5:ENST00000409368.5:ENST00000392244.7:ENST00000409712.5:ENST00000409181.1:ENST00000409498.6:ENST00000409205.5:ENST00000409627.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	91	2	2.9698	3.0890050000000002	3.20821	0.00124841	3.05489e-4	0.0323336	0.0155972
chr3	38371266	38371364	1399729	0	+	0.510204	(0.476,0.515]	chr3	146824	7	INTRON	INTRON	XYLB	ENSG00000093217.11	ENST00000207870.8:ENST00000650590.1:ENST00000424034.5:ENST00000649234.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	91	2	2.9698	3.0890050000000002	3.20821	0.00124841	3.05489e-4	0.0323336	0.0155972
chr4	75642942	75643041	2161778	0	-	0.30303	(0.28,0.32]	chr4	212947	12	UTR3	UTR3:EXON_MRNA	G3BP2	ENSG00000138757.15	ENST00000676666.1:ENST00000678062.1:ENST00000678100.1:ENST00000678122.1:ENST00000677265.1:ENST00000678971.1:ENST00000679281.1:ENST00000677333.1:ENST00000676470.1:ENST00000677620.1:ENST00000677606.1:ENST00000678798.1:ENST00000677583.1:ENST00000678447.1:ENST00000678875.1:ENST00000678244.1:ENST00000676974.1:ENST00000677003.1:ENST00000677889.1:ENST00000678329.1:ENST00000676584.1:ENST00000678552.1:ENST00000677192.1:ENST00000677727.1:ENST00000678265.1:ENST00000676839.1:ENST00000677876.1:ENST00000678123.1:ENST00000678578.1:ENST00000677171.1:ENST00000679329.1:ENST00000677794.1:ENST00000395719.7:ENST00000359707.9:ENST00000677060.1:ENST00000679294.1:ENST00000677201.1:ENST00000677952.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	104	2	2.74601	3.088795	3.43158	0.00244075	0.00100442	0.0445752	0.0292217
chr3	9650729	9650829	1359778	0	+	0.45	(0.44,0.476]	chr3	142841	2	SS5_PROX	SS5_PROX:INTRON	MTMR14	ENSG00000163719.20	ENST00000353332.9:ENST00000420925.5:ENST00000447144.5:ENST00000296003.9:ENST00000430020.5:ENST00000351233.9:ENST00000416864.5:ENST00000437997.1:ENST00000480578.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	51	2	2.9195	3.088755	3.25801	0.0102021	0.00248185	0.0850389	0.0460771
chr15	51881060	51881160	6027656	0	+	0.38	(0.378,0.408]	chr15	574299	54	INTRON	INTRON	TMOD3	ENSG00000138594.14	ENST00000308580.12:ENST00000560549.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	38	2	1.59317	3.08872	4.58427	0.0603812	0.0128325	0.19151	0.0926667
chr17	28564506	28564605	6744286	0	-	0.494949	(0.476,0.515]	chr17	662325	2	INTRON	INTRON	PIGS	ENSG00000087111.21	ENST00000268758.13:ENST00000395346.6:ENST00000308360.8:ENST00000584080.5:ENST00000582721.5:ENST00000577594.5:ENST00000583631.1:ENST00000584413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	51	2	2.82673	3.08866	3.35059	0.0134403	0.00171515	0.0946278	0.0381936
chr3	47295675	47295774	1419040	0	+	0.383838	(0.378,0.408]	chr3	149017	84	INTRON	INTRON	KLHL18	ENSG00000114648.12	ENST00000433449.5:ENST00000232766.6:ENST00000461084.5:ENST00000437353.5:ENST00000442272.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	39	2	2.21238	3.088545	3.96471	0.032421	0.0218124	0.145026	0.11491
chr1	39568705	39568801	427707	0	-	0.46875	(0.44,0.476]	chr1	51919	10	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	PABPC4	ENSG00000090621.15	ENST00000677006.1:ENST00000527718.2:ENST00000372858.8:ENST00000372856.7:ENST00000372857.7:ENST00000372862.7:ENST00000676523.1:ENST00000677548.1:ENST00000678980.1:ENST00000677244.1:ENST00000677609.1:ENST00000679246.1:ENST00000678287.1:ENST00000678625.1:ENST00000470443.6:ENST00000678894.1:ENST00000421687.6:ENST00000525669.5:ENST00000677644.1:ENST00000525751.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	70	2	2.81462	3.0884650000000002	3.36231	0.00247064	0.00161678	0.0446195	0.0369204
chr20	63934543	63934642	7301363	0	+	0.474747	(0.44,0.476]	chr20	743167	31	UTR3	UTR3:EXON_MRNA	DNAJC5	ENSG00000101152.11	ENST00000360864.9:ENST00000470551.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	70	2	2.81462	3.0884650000000002	3.36231	0.00247064	0.00161678	0.0446195	0.0369204
chr11	3751421	3751520	4894701	0	-	0.40404	(0.378,0.408]	chr11	458870	64	INTRON	INTRON	NUP98	ENSG00000110713.17	ENST00000359171.8:ENST00000324932.12:ENST00000650171.1:ENST00000355260.7:ENST00000397004.8:ENST00000397007.8:ENST00000527104.5:ENST00000529379.1:ENST00000397013.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	53	2	2.84663	3.088445	3.33026	0.0133954	0.00189824	0.0946278	0.0402736
chr2	157304560	157304658	896995	0	+	0.387755	(0.378,0.408]	chr2	99315	21	INTRON	INTRON	GALNT5	ENSG00000136542.9	ENST00000259056.5	protein_coding	protein_coding	protein_coding	protein_coding	2	53	2	2.84663	3.088445	3.33026	0.0133954	0.00189824	0.0946278	0.0402736
chr10	26664492	26664592	4583006	0	-	0.5	(0.476,0.515]	chr10	422280	1	SS3_PROX	SS3_PROX:INTRON	SELENOOLP	ENSG00000227932.2	ENST00000446557.1:ENST00000636744.1	transcribed_unitary_pseudogene	processed_transcript	transcribed_unitary_pseudogene	processed_transcript:transcribed_unitary_pseudogene	2	51	2	3.07422	3.08843	3.10264	0.00543163	0.00506023	0.0646039	0.0645052
chr11	68046536	68046636	4815714	0	+	0.48	(0.476,0.515]	chr11	448686	2	SS3_PROX	SS3_PROX:INTRON	TCIRG1	ENSG00000110719.10	ENST00000265686.8:ENST00000532635.5:ENST00000529364.1:ENST00000525724.5:ENST00000528981.5:ENST00000533005.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	51	2	3.07422	3.08843	3.10264	0.00543163	0.00506023	0.0646039	0.0645052
chr2	241685488	241685581	1349427	0	-	0.516129	(0.515,0.57]	chr2	141817	5	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	DTYMK	ENSG00000168393.13	ENST00000400770.6:ENST00000305784.7:ENST00000445261.5:ENST00000432348.5:ENST00000420144.1:ENST00000493095.1:ENST00000464603.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	180	2	2.71955	3.088375	3.4572	6.10685e-5	3.65611e-6	0.0064644	0.00136337
chr1	88806713	88806812	157006	0	+	0.484848	(0.476,0.515]	chr1	17100	3	INTRON	INTRON	PKN2	ENSG00000065243.20	ENST00000370521.8:ENST00000370513.9	protein_coding	protein_coding	protein_coding	protein_coding	3	68	2	2.93046	3.08821	3.24596	0.00322919	0.00118985	0.0507087	0.031662
chr6	17641544	17641642	3065545	0	-	0.520408	(0.515,0.57]	chr6	284800	11	INTRON	INTRON	NUP153	ENSG00000124789.12	ENST00000613258.4:ENST00000537253.5:ENST00000262077.3	protein_coding	protein_coding	protein_coding	protein_coding	3	60	2	2.32967	3.08796	3.84625	0.0133671	1.34155e-4	0.0946278	0.00998237
chr12	132770039	132770134	5449594	0	-	0.526316	(0.515,0.57]	chr12	521960	13	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	GOLGA3	ENSG00000090615.16	ENST00000204726.9:ENST00000450791.8:ENST00000693666.1:ENST00000690057.1:ENST00000688114.1:ENST00000687190.1:ENST00000690511.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	26	424	2	2.8155	3.087835	3.36017	6.13138e-7	3.33167e-7	4.25266e-4	3.12285e-4
chr3	69044995	69045095	1734646	0	-	0.39	(0.378,0.408]	chr3	176795	4	SS3_PROX	SS3_PROX:INTRON	TMF1	ENSG00000144747.17	ENST00000398559.7:ENST00000646304.1:ENST00000646708.1:ENST00000488010.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	44	2	1.51223	3.087805	4.66338	0.051139	0.0103469	0.176696	0.0850389
chr1	179845676	179845774	593138	0	-	0.346939	(0.32,0.35]	chr1	71080	59	UTR3	UTR3:EXON_MRNA	TOR1AIP2	ENSG00000169905.13	ENST00000367612.7:ENST00000609928.6	protein_coding	protein_coding	protein_coding	protein_coding	6	123	2	1.96868	3.087735	4.20679	0.00749728	7.30399e-5	0.0773151	0.00767614
chr12	6495325	6495425	5069232	0	+	0.34	(0.32,0.35]	chr12	478655	1	SS5_PROX	SS5_PROX:INTRON	NCAPD2	ENSG00000010292.13	ENST00000541399.1:ENST00000539714.5:ENST00000382457.8:ENST00000539084.5:ENST00000315579.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	59	2	2.84812	3.0877100000000004	3.3273	0.0147575	0.00218894	0.0983813	0.0435144
chr10	14892745	14892845	4397221	0	+	0.32	(0.28,0.32]	chr10	405960	107	INTRON	INTRON	SUV39H2	ENSG00000152455.16	ENST00000378331.5:ENST00000433779.5:ENST00000378325.7:ENST00000354919.11:ENST00000313519.9:ENST00000420416.1:ENST00000412254.1:ENST00000358298.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	36	2	1.83771	3.0876799999999998	4.33765	0.0591725	0.039714	0.189982	0.143072
chr12	70318198	70318298	5167193	0	+	0.32	(0.28,0.32]	chr12	489427	68	INTRON	INTRON	CNOT2	ENSG00000111596.14	ENST00000418359.7:ENST00000552319.5:ENST00000550160.5:ENST00000551661.5:ENST00000551132.5:ENST00000548021.5:ENST00000550641.6:ENST00000229195.8:ENST00000552915.5:ENST00000549443.5:ENST00000552483.5:ENST00000547321.5:ENST00000553020.5:ENST00000548159.5:ENST00000549750.5:ENST00000551043.5:ENST00000548599.5:ENST00000550194.5:ENST00000551873.5:ENST00000547867.5:ENST00000552151.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	36	2	1.83771	3.0876799999999998	4.33765	0.0591725	0.039714	0.189982	0.143072
chr2	64583445	64583543	798270	0	+	0.316327	(0.28,0.32]	chr2	89210	18	INTRON	INTRON	AFTPH	ENSG00000119844.17	ENST00000695864.1:ENST00000238856.8:ENST00000409933.6:ENST00000695867.1:ENST00000695960.1:ENST00000695866.1:ENST00000695865.1:ENST00000695869.1:ENST00000498706.5:ENST00000409183.5:ENST00000487769.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	36	2	1.83771	3.0876799999999998	4.33765	0.0591725	0.039714	0.189982	0.143072
chr2	135076466	135076566	872911	0	+	0.31	(0.28,0.32]	chr2	97740	138	INTRON	INTRON	RAB3GAP1	ENSG00000115839.19	ENST00000539493.3:ENST00000688088.1:ENST00000693554.1:ENST00000690785.1:ENST00000689880.1:ENST00000264158.13:ENST00000690208.1:ENST00000691478.1:ENST00000686114.1:ENST00000685967.1:ENST00000442034.5:ENST00000687199.1:ENST00000691339.1:ENST00000688182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	36	2	1.83771	3.0876799999999998	4.33765	0.0591725	0.039714	0.189982	0.143072
chr2	161197236	161197336	900699	0	+	0.32	(0.28,0.32]	chr2	99621	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	TANK	ENSG00000136560.14	ENST00000259075.6:ENST00000432002.5:ENST00000440506.5:ENST00000429217.5:ENST00000406287.5:ENST00000402568.5:ENST00000457887.5:ENST00000392749.7:ENST00000432692.6:ENST00000441987.5:ENST00000405852.5:ENST00000456358.5:ENST00000468831.5:ENST00000403609.1:ENST00000489393.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	36	2	1.83771	3.0876799999999998	4.33765	0.0591725	0.039714	0.189982	0.143072
chr21	38104131	38104230	7463927	0	-	0.292929	(0.28,0.32]	chr21	760303	44	INTRON	INTRON	DSCR4	ENSG00000184029.9	ENST00000398948.5:ENST00000328264.7:ENST00000482032.1	lncRNA	lncRNA	lncRNA	lncRNA	2	36	2	1.83771	3.0876799999999998	4.33765	0.0591725	0.039714	0.189982	0.143072
chr22	27923965	27924065	7492829	0	+	0.29	(0.28,0.32]	chr22	764485	15	EXON_LNCRNA	EXON_LNCRNA:SS3_PROX:INTRON	TTC28-AS1	ENSG00000235954.8	ENST00000430853.5:ENST00000434221.6:ENST00000417497.6:ENST00000662329.1:ENST00000424161.6:ENST00000419253.1:ENST00000437713.7:ENST00000454741.5:ENST00000659843.1:ENST00000665376.1:ENST00000453632.6:ENST00000662682.1:ENST00000655332.1:ENST00000454996.7:ENST00000665505.1:ENST00000435348.6:ENST00000428818.5:ENST00000664946.1:ENST00000425112.2:ENST00000654553.1:ENST00000669227.1:ENST00000670661.1:ENST00000452612.5:ENST00000688200.1:ENST00000690710.1:ENST00000670585.1:ENST00000662424.1	lncRNA	lncRNA	lncRNA	lncRNA	2	36	2	1.83771	3.0876799999999998	4.33765	0.0591725	0.039714	0.189982	0.143072
chr3	25753051	25753150	1642535	0	-	0.292929	(0.28,0.32]	chr3	168666	14	INTRON	INTRON	NGLY1	ENSG00000151092.18	ENST00000280700.10:ENST00000428257.5:ENST00000675217.1:ENST00000676225.1:ENST00000493324.5:ENST00000396649.7:ENST00000308710.9:ENST00000280699.13:ENST00000674841.1:ENST00000675234.1:ENST00000463611.2:ENST00000417874.6:ENST00000427041.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	36	2	1.83771	3.0876799999999998	4.33765	0.0591725	0.039714	0.189982	0.143072
chr3	125372503	125372603	1807085	0	-	0.31	(0.28,0.32]	chr3	181477	148	INTRON	INTRON	ZNF148	ENSG00000163848.20	ENST00000360647.9:ENST00000468369.5:ENST00000484491.5:ENST00000492394.5:ENST00000485866.5:ENST00000471196.1	protein_coding	protein_coding	protein_coding	protein_coding	2	36	2	1.83771	3.0876799999999998	4.33765	0.0591725	0.039714	0.189982	0.143072
chr7	105277654	105277754	3602789	0	-	0.3	(0.28,0.32]	chr7	336144	84	INTRON	INTRON	SRPK2	ENSG00000135250.17	ENST00000393651.8:ENST00000489828.5:ENST00000482897.5:ENST00000460391.5:ENST00000462282.5:ENST00000465112.5:ENST00000482862.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	36	2	1.83771	3.0876799999999998	4.33765	0.0591725	0.039714	0.189982	0.143072
chr1	32147211	32147310	63846	0	+	0.323232	(0.32,0.35]	chr1	8075	38	INTRON	INTRON	KPNA6	ENSG00000025800.14	ENST00000373625.8:ENST00000471599.5:ENST00000469790.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	59	2	2.99125	3.087585	3.18392	0.00958447	0.00379806	0.0820838	0.0562562
chr12	124782482	124782582	5445751	0	-	0.39	(0.378,0.408]	chr12	521215	4	SS5_PROX	SS5_PROX:INTRON	SCARB1	ENSG00000073060.17	ENST00000339570.9:ENST00000261693.11:ENST00000679605.1:ENST00000681686.1:ENST00000680926.1:ENST00000680556.1:ENST00000680982.1:ENST00000680596.1:ENST00000681555.1:ENST00000681788.1:ENST00000415380.6:ENST00000681117.1:ENST00000681499.1:ENST00000545305.1:ENST00000538291.5:ENST00000546215.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	18	402	2	2.66512	3.08741	3.5097	9.62025e-5	3.56431e-8	0.00879034	7.512e-5
chr3	21543395	21543495	1387342	0	+	0.63	(0.57,1]	chr3	145350	4	SS5_PROX	SS5_PROX:INTRON	ZNF385D-AS1	ENSG00000225542.2	ENST00000662195.1:ENST00000412369.1	lncRNA	lncRNA	lncRNA	lncRNA	4	49	2	3.01672	3.0872349999999997	3.15775	5.94133e-4	2.72513e-4	0.0221865	0.0151392
chr15	41280787	41280887	6004367	0	+	0.41	(0.408,0.44]	chr15	571237	15	UTR3	UTR3:EXON_MRNA	CHP1	ENSG00000187446.12	ENST00000334660.10	protein_coding	protein_coding	protein_coding	protein_coding	6	106	2	1.90614	3.08715	4.26816	0.0103993	1.58618e-5	0.0854042	0.00300937
chr3	177029695	177029793	1870730	0	-	0.357143	(0.35,0.378]	chr3	187282	20	INTRON	INTRON	TBL1XR1	ENSG00000177565.18	ENST00000636864.1:ENST00000457928.7:ENST00000430069.5:ENST00000637659.1:ENST00000673974.1:ENST00000631253.2:ENST00000352800.10:ENST00000422442.6:ENST00000626758.1:ENST00000636348.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	41	2	1.87586	3.0871250000000003	4.29839	0.0294717	0.0268864	0.135275	0.128055
chr8	30800652	30800751	3933029	0	-	0.363636	(0.35,0.378]	chr8	360326	5	INTRON	INTRON	PPP2CB	ENSG00000104695.13	ENST00000221138.9:ENST00000518564.1:ENST00000518243.5:ENST00000520056.1:ENST00000520500.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	41	2	1.87586	3.0871250000000003	4.29839	0.0294717	0.0268864	0.135275	0.128055
chr10	5891616	5891714	4385191	0	+	0.55102	(0.515,0.57]	chr10	404622	1	INTRON	INTRON	FBH1	ENSG00000134452.20	ENST00000397269.7:ENST00000362091.9:ENST00000470089.5:ENST00000462507.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	62	2	2.32836	3.0870949999999997	3.84583	0.0126662	1.82082e-4	0.0982897	0.0122264
chr3	194411199	194411299	1890407	0	-	0.43	(0.408,0.44]	chr3	189095	47	INTRON	INTRON	ATP13A3	ENSG00000133657.17	ENST00000687055.1:ENST00000645538.1:ENST00000645319.2:ENST00000690810.1:ENST00000429136.7:ENST00000645621.1:ENST00000691700.1:ENST00000461660.2:ENST00000685123.1:ENST00000642744.2:ENST00000439040.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	92	2	2.92033	3.08708	3.2538299999999998	0.00162151	2.37059e-4	0.0367655	0.0136195
chr9	92251028	92251125	4286891	0	-	0.391753	(0.378,0.408]	chr9	394145	3	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	IARS1	ENSG00000196305.19	ENST00000375643.7:ENST00000443024.7:ENST00000447699.7:ENST00000683537.1:ENST00000684726.1:ENST00000683192.1:ENST00000683565.1:ENST00000682756.1:ENST00000684542.1:ENST00000683793.1:ENST00000683817.1:ENST00000682141.1:ENST00000682893.1:ENST00000684557.1:ENST00000498025.2:ENST00000682156.1:ENST00000683017.1:ENST00000682521.1:ENST00000627121.3:ENST00000683469.1:ENST00000683495.1:ENST00000682578.1:ENST00000682533.1:ENST00000472894.2:ENST00000684757.1:ENST00000684445.1:ENST00000683376.1:ENST00000683679.1:ENST00000683119.1:ENST00000684594.1:ENST00000684267.1:ENST00000683477.1:ENST00000684232.1:ENST00000684328.1:ENST00000467876.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	51	2	1.58985	3.08706	4.58427	0.0290335	0.0128325	0.141186	0.0926667
chr22	16609667	16609766	7473437	0	+	0.626263	(0.57,1]	chr22	761972	71	INTRON	INTRON	TPTEP1:ENSG00000283633	ENSG00000100181.22:ENSG00000283633.1	ENST00000558085.6:ENST00000400593.6:ENST00000592918.5:ENST00000592107.5:ENST00000426585.5:ENST00000591299.1	lncRNA	lncRNA	lncRNA:transcribed_unprocessed_pseudogene	lncRNA:processed_transcript	21	191	2	2.37868	3.08705	3.79542	1.14757e-5	1.15627e-8	0.00250457	3.11591e-5
chr10	50343623	50343721	4617880	0	-	0.489796	(0.476,0.515]	chr10	425417	2	CDS	CDS:EXON_MRNA	SGMS1	ENSG00000198964.14	ENST00000429490.5:ENST00000361781.7:ENST00000361543.3:ENST00000626236.2:ENST00000619438.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	91	2	3.03027	3.08695	3.14363	9.53446e-4	4.25082e-4	0.0282335	0.018441
chr20	35734894	35734994	7336480	0	-	0.4	(0.378,0.408]	chr20	747483	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	RBM39	ENSG00000131051.24	ENST00000253363.11:ENST00000639702.1:ENST00000656873.1:ENST00000463004.5:ENST00000361162.10:ENST00000461283.5:ENST00000403542.6:ENST00000338163.10:ENST00000528062.7:ENST00000429968.5:ENST00000444878.5:ENST00000665058.1:ENST00000374038.7:ENST00000412738.5:ENST00000434927.5:ENST00000425184.5:ENST00000481037.5:ENST00000455343.5:ENST00000416108.5:ENST00000426951.5:ENST00000477334.1:ENST00000442447.5:ENST00000449489.5:ENST00000433027.5:ENST00000487604.1:ENST00000453310.5:ENST00000498280.1:ENST00000416529.5:ENST00000397370.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	43	2	2.18512	3.086895	3.98867	0.0507	0.00902136	0.156383	0.0851259
chr9	91922165	91922264	4284987	0	-	0.414141	(0.408,0.44]	chr9	393921	351	INTRON	INTRON	ROR2	ENSG00000169071.15	ENST00000375715.5:ENST00000375708.4:ENST00000495386.5:ENST00000546883.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	92	2	2.88913	3.08677	3.28441	0.00185044	2.01433e-4	0.0388609	0.0124157
chr1	1664900	1664998	360675	0	-	0.479592	(0.476,0.515]	chr1	41974	36	UTR3	UTR3:EXON_MRNA:INTRON	SLC35E2B	ENSG00000189339.12	ENST00000614300.4:ENST00000617444.5:ENST00000611123.1:ENST00000480991.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	93	2	2.2792	3.0867649999999998	3.89433	0.00299196	1.98377e-4	0.0503888	0.0129156
chr7	74890566	74890610	3556765	0	-	0.568182	(0.515,0.57]	chr7	331191	1	EXON_LNCRNA	EXON_LNCRNA	STAG3L2	ENSG00000277072.5	ENST00000652688.1:ENST00000426587.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	5	95	2	2.90111	3.08676	3.27241	3.57078e-4	1.80226e-4	0.0175154	0.0116696
chr3	8918110	8918210	1610196	0	-	0.49	(0.476,0.515]	chr3	166168	40	INTRON	INTRON	RAD18	ENSG00000070950.10	ENST00000264926.7:ENST00000415439.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	42	2	1.7425	3.086715	4.43093	0.0417334	0.00931369	0.147007	0.0855292
chr5	31478686	31478785	2596460	0	-	0.454545	(0.44,0.476]	chr5	246625	61	INTRON	INTRON	DROSHA	ENSG00000113360.17	ENST00000344624.8:ENST00000511367.6:ENST00000513349.5:ENST00000512124.6:ENST00000510375.5:ENST00000512885.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	39	2	2.33899	3.0866949999999997	3.8344	0.041276	0.0142027	0.161534	0.0959987
chr15	44519734	44519832	6015289	0	+	0.357143	(0.35,0.378]	chr15	572993	2	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	CTDSPL2	ENSG00000137770.14	ENST00000260327.9:ENST00000558966.5:ENST00000558373.5:ENST00000560620.1:ENST00000559738.1:ENST00000559175.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	89	2	2.5003	3.0866800000000003	3.67306	0.00256148	7.05001e-4	0.0466761	0.024224
chr10	130137911	130138011	4536342	0	+	0.56	(0.515,0.57]	chr10	418779	10	INTRON	INTRON	GLRX3	ENSG00000108010.12	ENST00000331244.10:ENST00000481034.1:ENST00000368644.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	28	2	1.86007	3.086665	4.31326	0.0526611	0.0141817	0.178401	0.0959618
chr19	9534987	9535087	7132692	0	-	0.52	(0.515,0.57]	chr19	718789	4	SS5_PROX	SS5_PROX:INTRON	ZNF426	ENSG00000130818.12	ENST00000253115.7:ENST00000593003.5:ENST00000535489.5:ENST00000589289.1:ENST00000635810.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	28	2	1.86007	3.086665	4.31326	0.0526611	0.0141817	0.178401	0.0959618
chr2	177235269	177235369	1275552	0	-	0.53	(0.515,0.57]	chr2	134708	6	INTRON	INTRON	NFE2L2	ENSG00000116044.16	ENST00000397063.8:ENST00000464747.5:ENST00000397062.8:ENST00000446151.6:ENST00000449627.1:ENST00000448782.5:ENST00000430047.1:ENST00000586532.5:ENST00000421929.5:ENST00000423513.5:ENST00000588123.1:ENST00000477534.1:ENST00000462023.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	28	2	1.86007	3.086665	4.31326	0.0526611	0.0141817	0.178401	0.0959618
chr21	36345431	36345531	7403952	0	+	0.54	(0.515,0.57]	chr21	754317	4	SS5_PROX	SS5_PROX:INTRON	MORC3	ENSG00000159256.13	ENST00000400485.6:ENST00000487909.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	28	2	1.86007	3.086665	4.31326	0.0526611	0.0141817	0.178401	0.0959618
chr3	47644060	47644160	1683670	0	-	0.54	(0.515,0.57]	chr3	171996	49	INTRON	INTRON	SMARCC1	ENSG00000173473.11	ENST00000254480.10:ENST00000425518.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	28	2	1.86007	3.086665	4.31326	0.0526611	0.0141817	0.178401	0.0959618
chr5	132949501	132949601	2725129	0	-	0.52	(0.515,0.57]	chr5	256349	119	INTRON	INTRON	AFF4	ENSG00000072364.13	ENST00000265343.10:ENST00000378595.7:ENST00000491831.5:ENST00000465484.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	28	2	1.86007	3.086665	4.31326	0.0526611	0.0141817	0.178401	0.0959618
chr2	58195072	58195172	1126280	0	-	0.3	(0.28,0.32]	chr2	120916	4	INTRON	INTRON	FANCL	ENSG00000115392.13	ENST00000696400.1:ENST00000403295.8:ENST00000696492.1:ENST00000427708.7:ENST00000696314.1:ENST00000696315.1:ENST00000696454.1:ENST00000696508.1:ENST00000696548.1:ENST00000696542.1:ENST00000696432.1:ENST00000696319.1:ENST00000403676.6:ENST00000696433.1:ENST00000696434.1:ENST00000696499.1:ENST00000696564.1:ENST00000402135.8:ENST00000696546.1:ENST00000233741.9:ENST00000696316.1:ENST00000696378.1:ENST00000696435.1:ENST00000696493.1:ENST00000696543.1:ENST00000696544.1:ENST00000696545.1:ENST00000696565.1:ENST00000696620.1:ENST00000696621.1:ENST00000696635.1:ENST00000696364.1:ENST00000696634.1:ENST00000696317.1:ENST00000696622.1:ENST00000696467.1:ENST00000696547.1:ENST00000449070.6:ENST00000696305.1:ENST00000417361.2:ENST00000696338.1:ENST00000696361.1:ENST00000696318.1:ENST00000696371.1:ENST00000696409.1:ENST00000696410.1:ENST00000696455.1:ENST00000696468.1:ENST00000696527.1:ENST00000696567.1:ENST00000696324.1:ENST00000696566.1:ENST00000696623.1:ENST00000446381.6:ENST00000696469.1:ENST00000696624.1:ENST00000696411.1:ENST00000696475.1:ENST00000470506.2:ENST00000696358.1:ENST00000696373.1:ENST00000696394.1:ENST00000696320.1:ENST00000696339.1:ENST00000696395.1:ENST00000696341.1:ENST00000696340.1:ENST00000696374.1:ENST00000696396.1:ENST00000696342.1:ENST00000696325.1:ENST00000696399.1:ENST00000696398.1:ENST00000696306.1:ENST00000696397.1:ENST00000696360.1:ENST00000696344.1:ENST00000696343.1:ENST00000696637.1:ENST00000696362.1:ENST00000696528.1:ENST00000696497.1:ENST00000696326.1:ENST00000696638.1:ENST00000696625.1:ENST00000696510.1:ENST00000696438.1:ENST00000696496.1:ENST00000696509.1:ENST00000696569.1:ENST00000696457.1:ENST00000696458.1:ENST00000696473.1:ENST00000696495.1:ENST00000696415.1:ENST00000696472.1:ENST00000696494.1:ENST00000696363.1:ENST00000696414.1:ENST00000696459.1:ENST00000696498.1:ENST00000696416.1:ENST00000696530.1:ENST00000696460.1:ENST00000696570.1:ENST00000696531.1:ENST00000696307.1:ENST00000696401.1:ENST00000696345.1:ENST00000696377.1:ENST00000696417.1:ENST00000696594.1:ENST00000696595.1:ENST00000696379.1:ENST00000696346.1:ENST00000696380.1:ENST00000696347.1:ENST00000696461.1:ENST00000696596.1:ENST00000696549.1:ENST00000696597.1:ENST00000696550.1:ENST00000696598.1:ENST00000696321.1:ENST00000696476.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	44	2	1.6633	3.0865549999999997	4.50981	0.0522231	0.0275554	0.177274	0.123904
chr17	20886394	20886494	6576243	0	+	0.44	(0.408,0.44]	chr17	639372	174	INTRON	INTRON	CCDC144NL-AS1	ENSG00000233098.10	ENST00000577537.5:ENST00000692759.1:ENST00000443508.8:ENST00000692309.1:ENST00000439794.6:ENST00000417232.6:ENST00000583962.2:ENST00000582324.5:ENST00000577860.5	lncRNA	lncRNA	lncRNA	lncRNA	3	69	2	2.64829	3.0865	3.52471	0.00400062	0.00112428	0.057767	0.0306963
chr3	14475009	14475109	1370137	0	+	0.56	(0.515,0.57]	chr3	144379	23	INTRON	INTRON	SLC6A6	ENSG00000131389.18	ENST00000613060.4:ENST00000618278.4:ENST00000610642.4:ENST00000649500.1:ENST00000622186.5:ENST00000452151.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	114	2	2.98563	3.0864700000000003	3.18731	1.77567e-4	7.269e-5	0.0116289	0.00767614
chr4	26333844	26333944	1936801	0	+	0.46	(0.44,0.476]	chr4	194354	105	INTRON	INTRON	RBPJ	ENSG00000168214.22	ENST00000512351.5:ENST00000681799.1:ENST00000681403.1:ENST00000342295.6:ENST00000512671.6:ENST00000506956.5:ENST00000345843.8:ENST00000361572.10:ENST00000514380.5:ENST00000514807.5:ENST00000348160.9:ENST00000681506.1:ENST00000509158.6:ENST00000691085.1:ENST00000692303.1:ENST00000681856.1:ENST00000513182.5:ENST00000681025.1:ENST00000681679.1:ENST00000680210.1:ENST00000355476.8:ENST00000680140.1:ENST00000511401.5:ENST00000680511.1:ENST00000510778.7:ENST00000679698.1:ENST00000679469.1:ENST00000681484.1:ENST00000505958.6:ENST00000507561.5:ENST00000514730.5:ENST00000507574.5:ENST00000514675.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	53	2	2.5364	3.0863899999999997	3.63638	0.0309324	4.74104e-4	0.13151	0.0196816
chr12	25215960	25216060	5298028	0	-	0.36	(0.35,0.378]	chr12	503912	4	SS3_PROX	SS3_PROX:INTRON	KRAS	ENSG00000133703.14	ENST00000256078.10:ENST00000311936.8:ENST00000690406.1:ENST00000686877.1:ENST00000685328.1:ENST00000693229.1:ENST00000687356.1:ENST00000692768.1:ENST00000688940.1:ENST00000690804.1:ENST00000557334.6:ENST00000688228.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	33	2	1.9755	3.0863	4.1971	0.0398617	0.0367539	0.161534	0.138959
chr2	86166744	86166844	1170872	0	-	0.37	(0.35,0.378]	chr2	124969	1	SS3_PROX	SS3_PROX:INTRON	IMMT	ENSG00000132305.22	ENST00000449247.6:ENST00000254636.9:ENST00000410111.8:ENST00000442664.6:ENST00000419070.6:ENST00000409051.6:ENST00000474969.5:ENST00000490238.5:ENST00000409258.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	33	2	1.9755	3.0863	4.1971	0.0398617	0.0367539	0.161534	0.138959
chr7	152356195	152356295	3680495	0	-	0.36	(0.35,0.378]	chr7	341654	116	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000682301.1:ENST00000452749.2:ENST00000680867.1:ENST00000683800.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	33	2	1.9755	3.0863	4.1971	0.0398617	0.0367539	0.161534	0.138959
chr9	120822447	120822543	4335542	0	-	0.28125	(0.28,0.32]	chr9	398286	6	INTRON	INTRON	PSMD5	ENSG00000095261.14	ENST00000373920.6:ENST00000210313.8:ENST00000373904.5	protein_coding	protein_coding	protein_coding	protein_coding	6	160	2	2.89007	3.0862800000000004	3.28249	5.32738e-4	1.94598e-4	0.0213425	0.0122121
chr1	23148872	23148972	398818	0	-	0.46	(0.44,0.476]	chr1	47812	153	INTRON	INTRON	LUZP1	ENSG00000169641.14	ENST00000302291.8:ENST00000314174.5:ENST00000471849.5	protein_coding	protein_coding	protein_coding	protein_coding	2	34	2	1.83899	3.0862249999999998	4.33346	0.0589734	0.0120349	0.167915	0.0962115
chr10	118310159	118310259	4703260	0	-	0.46	(0.44,0.476]	chr10	433794	124	UTR3	UTR3:EXON_MRNA	FAM204A	ENSG00000165669.14	ENST00000369183.9	protein_coding	protein_coding	protein_coding	protein_coding	2	34	2	1.83899	3.0862249999999998	4.33346	0.0589734	0.0120349	0.167915	0.0962115
chr2	127287608	127287700	1222822	0	-	0.445652	(0.44,0.476]	chr2	130162	2	INTRON	INTRON	ERCC3	ENSG00000163161.14	ENST00000426778.5:ENST00000285398.7:ENST00000646042.1:ENST00000647169.1:ENST00000445889.5:ENST00000647496.1:ENST00000646654.1:ENST00000645233.1:ENST00000645736.1:ENST00000645467.1:ENST00000644317.1:ENST00000494464.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	34	2	1.83899	3.0862249999999998	4.33346	0.0589734	0.0120349	0.167915	0.0962115
chr8	129502756	129502856	4060309	0	-	0.33	(0.32,0.35]	chr8	369642	76	INTRON	INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1:ENST00000676273.1:ENST00000667643.1:ENST00000668791.1:ENST00000663716.1:ENST00000663572.1:ENST00000676148.1:ENST00000667962.1:ENST00000674877.1:ENST00000675316.1:ENST00000674656.1:ENST00000446592.7:ENST00000667341.1:ENST00000675186.1:ENST00000652971.1:ENST00000661447.1:ENST00000674863.1:ENST00000675498.1:ENST00000675527.1:ENST00000676108.1:ENST00000657647.1:ENST00000675589.1:ENST00000675913.1:ENST00000675109.1:ENST00000671632.1:ENST00000671311.1:ENST00000676099.1:ENST00000660652.1:ENST00000675522.1:ENST00000675183.1:ENST00000658861.1:ENST00000663991.1:ENST00000675044.1:ENST00000675435.1:ENST00000674639.1:ENST00000676069.1:ENST00000675532.1:ENST00000674762.1:ENST00000523151.6:ENST00000675948.1:ENST00000665364.1:ENST00000657251.1:ENST00000675166.1:ENST00000674883.1:ENST00000675867.1:ENST00000674580.1:ENST00000675393.1:ENST00000520048.1:ENST00000674906.1:ENST00000676030.1:ENST00000670588.1:ENST00000675072.1:ENST00000664936.1:ENST00000652914.1:ENST00000657069.1	lncRNA	lncRNA	lncRNA	lncRNA	7	177	2	2.97676	3.0859199999999998	3.19508	1.66545e-4	9.93199e-5	0.0118326	0.00838841
chr12	104496605	104496705	5211080	0	+	0.39	(0.378,0.408]	chr12	493315	387	INTRON	INTRON	CHST11	ENSG00000171310.11	ENST00000303694.6:ENST00000547956.1:ENST00000549260.5:ENST00000546689.1	protein_coding	protein_coding	protein_coding	protein_coding	4	95	2	2.86464	3.0859050000000003	3.30717	0.00215581	1.8574e-4	0.0417866	0.0118964
chr5	36888294	36888394	2338545	0	+	0.3	(0.28,0.32]	chr5	225949	19	INTRON	INTRON	NIPBL	ENSG00000164190.19	ENST00000282516.13:ENST00000448238.2:ENST00000652901.1	protein_coding	protein_coding	protein_coding	protein_coding	2	64	2	3.04485	3.085825	3.1268	0.00894006	0.00508956	0.0799922	0.0646039
chr17	16439237	16439326	6562647	0	+	0.662921	(0.57,1]	chr17	637914	3	EXON_LNCRNA	EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SNHG29	ENSG00000175061.19	ENST00000475947.7:ENST00000584177.5:ENST00000487066.6:ENST00000580180.6:ENST00000660020.1:ENST00000665646.1:ENST00000481898.6:ENST00000660419.1:ENST00000668333.1:ENST00000667979.2:ENST00000663781.1:ENST00000664939.1:ENST00000491009.6:ENST00000583400.7:ENST00000654778.1:ENST00000497774.6:ENST00000669136.1:ENST00000659884.1:ENST00000582911.6:ENST00000666215.2:ENST00000580770.5:ENST00000581718.6:ENST00000579473.6:ENST00000581361.5:ENST00000692724.1:ENST00000689691.1:ENST00000686699.1:ENST00000483140.7:ENST00000477249.7:ENST00000484836.2:ENST00000655540.1:ENST00000475953.6:ENST00000470491.7:ENST00000480811.6:ENST00000662869.1:ENST00000671170.1:ENST00000658116.2:ENST00000685971.1:ENST00000689483.1:ENST00000688805.1:ENST00000692720.1:ENST00000653954.1:ENST00000584926.5:ENST00000654561.1:ENST00000584141.5:ENST00000492250.5:ENST00000654356.1:ENST00000578757.5:ENST00000578380.6:ENST00000581913.5:ENST00000660462.1:ENST00000481027.5	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	3	38	2	2.47993	3.0858049999999997	3.69168	0.007207	2.1608e-4	0.0756278	0.0134537
chr3	172759755	172759855	1563305	0	+	0.32	(0.28,0.32]	chr3	161740	2	SS3_PROX	SS3_PROX:INTRON	ECT2	ENSG00000114346.14	ENST00000232458.9:ENST00000540509.5:ENST00000392692.8:ENST00000417960.5:ENST00000428567.5:ENST00000441497.6	protein_coding	protein_coding	protein_coding	protein_coding	2	67	2	2.45545	3.0858049999999997	3.71616	0.0438092	4.76221e-4	0.14901	0.0197443
chr1	1476474	1476573	1612	0	+	0.454545	(0.44,0.476]	chr1	364	40	INTRON	INTRON	ATAD3B	ENSG00000160072.20	ENST00000673477.1:ENST00000308647.8	protein_coding	protein_coding	protein_coding	protein_coding	6	125	2	2.75777	3.0858	3.41383	2.63233e-4	1.54313e-4	0.0143626	0.0113252
chr10	68068461	68068558	4637879	0	-	0.391753	(0.378,0.408]	chr10	426440	9	UTR3	UTR3:EXON_MRNA:INTRON	HERC4	ENSG00000148634.16	ENST00000373700.9:ENST00000412272.6:ENST00000395198.7:ENST00000473533.6:ENST00000427635.6:ENST00000513996.5:ENST00000395185.7:ENST00000505760.5:ENST00000492996.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	10	143	2	1.787	3.08576	4.38452	0.00474983	1.93751e-5	0.0635784	0.00356815
chr1	26245116	26245216	49596	0	+	0.43	(0.408,0.44]	chr1	6205	4	INTRON	INTRON	CEP85	ENSG00000130695.16	ENST00000451429.8:ENST00000640292.2:ENST00000252992.8	protein_coding	protein_coding	protein_coding	protein_coding	4	92	2	2.98079	3.0857200000000002	3.19065	0.00124935	3.2984e-4	0.0323434	0.0161352
chr8	116867081	116867171	4034577	0	-	0.3	(0.28,0.32]	chr8	368150	2	SS3_PROX	SS3_PROX:INTRON	RAD21	ENSG00000164754.16	ENST00000297338.7:ENST00000517485.6:ENST00000519837.6:ENST00000522699.2:ENST00000687358.1:ENST00000520992.6:ENST00000517749.2:ENST00000685972.1:ENST00000687902.1:ENST00000523547.2:ENST00000686622.1:ENST00000688033.1:ENST00000689504.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	48	2	2.02902	3.08558	4.14214	0.0579756	0.0174423	0.167723	0.11269
chr2	55033018	55033118	1121235	0	-	0.29	(0.28,0.32]	chr2	120163	44	INTRON	INTRON	RTN4	ENSG00000115310.19	ENST00000404909.5:ENST00000394611.6:ENST00000317610.11:ENST00000357732.8:ENST00000337526.11:ENST00000357376.7:ENST00000405240.5:ENST00000438462.1:ENST00000427710.5	protein_coding	protein_coding	protein_coding	protein_coding	10	236	2	2.83329	3.085535	3.33778	4.17819e-4	2.8953e-5	0.0189084	0.00426701
chr17	80294019	80294119	6683399	0	+	0.43	(0.408,0.44]	chr17	652993	18	INTRON	INTRON	RNF213	ENSG00000173821.20	ENST00000582970.6:ENST00000508628.6:ENST00000319921.4:ENST00000559070.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	70	2	2.26792	3.085515	3.90311	0.0179973	1.24325e-4	0.106756	0.00952291
chr5	54023409	54023509	2618038	0	-	0.39	(0.378,0.408]	chr5	248835	1114	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	86	2	2.13797	3.085455	4.03294	0.0124882	6.52685e-5	0.0923444	0.00669119
chr10	27147038	27147135	4586216	0	-	0.360825	(0.35,0.378]	chr10	422770	16	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	YME1L1	ENSG00000136758.20	ENST00000376016.8:ENST00000613434.4:ENST00000326799.7:ENST00000491542.6:ENST00000427324.5:ENST00000396296.7:ENST00000477432.1	protein_coding	protein_coding	protein_coding	protein_coding	3	74	2	2.91516	3.085325	3.25549	0.00363602	0.0013628	0.0535085	0.0339121
chr9	135936940	135937038	4372312	0	-	0.479592	(0.476,0.515]	chr9	402502	31	INTRON	INTRON	UBAC1	ENSG00000130560.9	ENST00000371756.4:ENST00000489050.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	127	2	2.7567	3.0853	3.4139	3.76694e-4	1.00747e-4	0.017994	0.00847812
chr1	113807117	113807217	525895	0	-	0.52	(0.515,0.57]	chr1	61864	87	INTRON	INTRON	RSBN1	ENSG00000081019.14	ENST00000261441.9:ENST00000612242.4:ENST00000476412.5:ENST00000615321.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	22	2	2.12971	3.0852850000000003	4.04086	0.0757903	0.0197045	0.194427	0.120063
chr12	96298221	96298294	5394249	0	-	0.547945	(0.515,0.57]	chr12	514413	1	INTRON	INTRON	CDK17	ENSG00000059758.8	ENST00000261211.8:ENST00000543119.6:ENST00000542666.5:ENST00000553042.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	22	2	2.12971	3.0852850000000003	4.04086	0.0757903	0.0197045	0.194427	0.120063
chr14	76363355	76363455	5797633	0	+	0.52	(0.515,0.57]	chr14	549230	521	INTRON	INTRON	ESRRB	ENSG00000119715.15	ENST00000512784.6	protein_coding	protein_coding	protein_coding	protein_coding	1	22	2	2.12971	3.0852850000000003	4.04086	0.0757903	0.0197045	0.194427	0.120063
chr16	1456606	1456706	6428140	0	-	0.53	(0.515,0.57]	chr16	617969	4	SS3_PROX	SS3_PROX:INTRON	CLCN7	ENSG00000103249.18	ENST00000382745.9:ENST00000448525.5:ENST00000262318.12:ENST00000563822.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	22	2	2.12971	3.0852850000000003	4.04086	0.0757903	0.0197045	0.194427	0.120063
chr19	2446729	2446828	7116080	0	-	0.555556	(0.515,0.57]	chr19	715394	18	INTRON	INTRON	LMNB2	ENSG00000176619.13	ENST00000325327.4	protein_coding	protein_coding	protein_coding	protein_coding	1	22	2	2.12971	3.0852850000000003	4.04086	0.0757903	0.0197045	0.194427	0.120063
chr2	197976560	197976660	970822	0	+	0.52	(0.515,0.57]	chr2	104858	1659	INTRON	INTRON	PLCL1	ENSG00000115896.16	ENST00000428675.6:ENST00000435320.1:ENST00000487695.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	22	2	2.12971	3.0852850000000003	4.04086	0.0757903	0.0197045	0.194427	0.120063
chr21	34842799	34842899	7446809	0	-	0.56	(0.515,0.57]	chr21	759836	78	INTRON	INTRON	RUNX1	ENSG00000159216.19	ENST00000300305.7:ENST00000675419.1:ENST00000437180.5:ENST00000344691.8:ENST00000482318.5:ENST00000399240.5:ENST00000358356.9:ENST00000469087.1:ENST00000399237.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	22	2	2.12971	3.0852850000000003	4.04086	0.0757903	0.0197045	0.194427	0.120063
chr4	34334628	34334728	2125652	0	-	0.53	(0.515,0.57]	chr4	209579	3	SS5_PROX	SS5_PROX:INTRON	LINC02484	ENSG00000248685.6	ENST00000658479.1	lncRNA	lncRNA	lncRNA	lncRNA	1	22	2	2.12971	3.0852850000000003	4.04086	0.0757903	0.0197045	0.194427	0.120063
chr6	69685706	69685806	3135461	0	-	0.57	(0.515,0.57]	chr6	292179	88	INTRON	INTRON	LMBRD1	ENSG00000168216.13	ENST00000651675.1:ENST00000649934.3:ENST00000647655.1:ENST00000648265.1:ENST00000649679.1:ENST00000649673.1:ENST00000649057.1:ENST00000370570.6:ENST00000648168.1:ENST00000649370.1:ENST00000647934.1:ENST00000649918.1:ENST00000649744.1:ENST00000650124.1:ENST00000648210.1:ENST00000648303.1:ENST00000649011.1:ENST00000472827.2:ENST00000648635.1:ENST00000647650.1:ENST00000649028.1:ENST00000649958.1:ENST00000649166.1:ENST00000650107.1:ENST00000647964.1:ENST00000648394.1:ENST00000648743.1:ENST00000650473.1:ENST00000650035.1:ENST00000649054.1:ENST00000650043.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	22	2	2.12971	3.0852850000000003	4.04086	0.0757903	0.0197045	0.194427	0.120063
chr7	155708976	155709076	3452549	0	+	0.57	(0.515,0.57]	chr7	322690	12	INTRON	INTRON	RBM33	ENSG00000184863.11	ENST00000401878.8:ENST00000307403.6:ENST00000440108.5:ENST00000392761.3:ENST00000486747.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	22	2	2.12971	3.0852850000000003	4.04086	0.0757903	0.0197045	0.194427	0.120063
chr17	17280473	17280573	6736435	0	-	0.54	(0.515,0.57]	chr17	661010	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	COPS3	ENSG00000141030.13	ENST00000268717.10:ENST00000539941.6:ENST00000578317.5:ENST00000439936.6:ENST00000577210.5:ENST00000417352.5:ENST00000584216.5:ENST00000492672.5:ENST00000477299.5:ENST00000577246.5:ENST00000462236.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	97	2	2.57697	3.085255	3.59354	0.00153959	3.84354e-5	0.0362709	0.00528498
chr16	2445722	2445822	6278088	0	+	0.54	(0.515,0.57]	chr16	600408	1	SS5_PROX	SS5_PROX:PRIMIRNA:INTRON	CCNF:MIR6767	ENSG00000162063.13:ENSG00000283180.1	ENST00000293968.11:ENST00000397066.9:ENST00000564236.1:ENST00000637302.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:nonsense_mediated_decay:primary_miRNA	5	81	2	2.54852	3.08508	3.62164	7.08868e-4	5.41944e-4	0.0242289	0.0215026
chr6	7143604	7143704	2798723	0	+	0.48	(0.476,0.515]	chr6	263733	24	INTRON	INTRON	RREB1	ENSG00000124782.21	ENST00000379933.7:ENST00000491191.5:ENST00000471433.5:ENST00000379938.7:ENST00000467782.5:ENST00000349384.10:ENST00000334984.10:ENST00000475946.5:ENST00000483150.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	93	2	2.24654	3.0848	3.92306	0.00346427	1.72405e-4	0.0539802	0.0120625
chr9	124736646	124736746	4348869	0	-	0.48	(0.476,0.515]	chr9	399261	29	INTRON	INTRON	NR6A1	ENSG00000148200.17	ENST00000487099.7:ENST00000373584.7:ENST00000416460.6:ENST00000344523.8	protein_coding	protein_coding	protein_coding	protein_coding	2	52	2	2.87879	3.084765	3.29074	0.00999149	0.00272563	0.0879541	0.0467523
chr17	20891929	20892029	6576299	0	+	0.49	(0.476,0.515]	chr17	639379	3	SS3_PROX	SS3_PROX:INTRON	CCDC144NL-AS1	ENSG00000233098.10	ENST00000577537.5:ENST00000692759.1:ENST00000443508.8:ENST00000692309.1:ENST00000439794.6:ENST00000417232.6:ENST00000583962.2:ENST00000582324.5:ENST00000577860.5	lncRNA	lncRNA	lncRNA	lncRNA	5	95	2	1.86182	3.084755	4.30769	0.0178986	1.28603e-5	0.106365	0.00266147
chr1	185302558	185302657	603557	0	-	0.313131	(0.28,0.32]	chr1	71888	6	INTRON	INTRON	IVNS1ABP	ENSG00000116679.16	ENST00000367498.8:ENST00000480769.5:ENST00000459929.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	90	2	2.38391	3.08463	3.78535	0.0122525	6.21154e-4	0.0969406	0.0229151
chr13	99548374	99548471	5527357	0	+	0.268041	[0,0.28]	chr13	528400	9	INTRON	INTRON	TM9SF2	ENSG00000125304.10	ENST00000642475.1:ENST00000376387.5	protein_coding	protein_coding	protein_coding	protein_coding	3	48	2	1.62313	3.084615	4.5461	0.0605286	0.0365918	0.191883	0.138959
chr10	94563474	94563573	4499798	0	+	0.454545	(0.44,0.476]	chr10	414246	2	INTRON	INTRON	HELLS	ENSG00000119969.15	ENST00000239026.10:ENST00000371332.8:ENST00000348459.10:ENST00000419900.5:ENST00000394036.5:ENST00000394045.5:ENST00000462057.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	69	2	2.7096	3.0845849999999997	3.45957	0.00376205	0.00106385	0.0539118	0.0300133
chr6	7182282	7182382	2799113	0	+	0.47	(0.44,0.476]	chr6	263748	2	SS5_PROX	SS5_PROX:INTRON	RREB1	ENSG00000124782.21	ENST00000379933.7:ENST00000491191.5:ENST00000471433.5:ENST00000379938.7:ENST00000349384.10:ENST00000334984.10:ENST00000475946.5:ENST00000483150.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	69	2	2.7096	3.0845849999999997	3.45957	0.00376205	0.00106385	0.0539118	0.0300133
chrX	130163369	130163468	7888016	0	-	0.383838	(0.378,0.408]	chrX	803166	50	INTRON	INTRON	AIFM1	ENSG00000156709.15	ENST00000675050.1:ENST00000676229.1:ENST00000674546.1:ENST00000287295.8:ENST00000675092.1:ENST00000675427.1:ENST00000675857.1:ENST00000346424.6:ENST00000535724.6:ENST00000527892.5:ENST00000416073.7:ENST00000676328.1:ENST00000676436.1:ENST00000674997.1:ENST00000319908.8:ENST00000675240.1:ENST00000674555.1:ENST00000675037.1:ENST00000674722.1:ENST00000675774.1:ENST00000529877.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	53	2	2.78946	3.08458	3.3797	0.0158859	0.00154501	0.101453	0.0362716
chr7	128612768	128612868	3408177	0	+	0.52	(0.515,0.57]	chr7	318376	28	INTRON	INTRON	ENSG00000280828:ENSG00000242588	ENSG00000280828.1:ENSG00000242588.6	ENST00000479267.2:ENST00000605862.5	lncRNA	lncRNA	lncRNA:unprocessed_pseudogene	lncRNA:unprocessed_pseudogene	7	130	2	2.54655	3.084555	3.62256	8.595e-4	2.84e-6	0.0267428	0.00107692
chr6	47528307	47528407	2874071	0	+	0.47	(0.44,0.476]	chr6	272731	245	INTRON	INTRON	CD2AP	ENSG00000198087.7	ENST00000359314.5	protein_coding	protein_coding	protein_coding	protein_coding	5	113	2	2.81462	3.084425	3.35423	0.00247064	2.39954e-5	0.0446195	0.00383194
chr1	40399079	40399178	81698	0	+	0.343434	(0.32,0.35]	chr1	10562	18	INTRON	INTRON	SMAP2	ENSG00000084070.12	ENST00000435168.6:ENST00000372718.8:ENST00000372708.5:ENST00000614549.4:ENST00000539317.2	protein_coding	protein_coding	protein_coding	protein_coding	2	59	2	3.03597	3.08437	3.13277	0.00832487	0.00458313	0.0774402	0.0622676
chr17	28671331	28671431	6584467	0	+	0.35	(0.32,0.35]	chr17	640011	1	SS5_PROX	SS5_PROX:INTRON	SUPT6H	ENSG00000109111.15	ENST00000347486.8:ENST00000314616.11:ENST00000577713.1	protein_coding	protein_coding	protein_coding	protein_coding	2	59	2	3.03597	3.08437	3.13277	0.00832487	0.00458313	0.0774402	0.0622676
chr3	196501173	196501272	1899997	0	-	0.363636	(0.35,0.378]	chr3	190261	121	INTRON	INTRON	RNF168	ENSG00000163961.4	ENST00000318037.3:ENST00000437070.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	56	2	1.31002	3.0843599999999998	4.8587	0.0562395	0.00695662	0.184114	0.0718189
chr3	179392455	179392555	1567399	0	+	0.4	(0.378,0.408]	chr3	162161	5	UTR3	UTR3:EXON_MRNA	MFN1	ENSG00000171109.19	ENST00000471841.6:ENST00000357390.8:ENST00000263969.9:ENST00000474903.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	53	2	3.05502	3.08431	3.1136	0.00689519	0.00443339	0.0717484	0.061054
chr5	98865942	98866040	2683398	0	-	0.397959	(0.378,0.408]	chr5	253792	20	INTRON	INTRON	CHD1	ENSG00000153922.11	ENST00000614616.5:ENST00000284049.7:ENST00000514344.5:ENST00000512844.5:ENST00000505657.1:ENST00000511067.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	53	2	3.05502	3.08431	3.1136	0.00689519	0.00443339	0.0717484	0.061054
chr1	33023844	33023941	416725	0	-	0.463918	(0.44,0.476]	chr1	50345	18	INTRON	INTRON	AK2	ENSG00000004455.18	ENST00000373449.7:ENST00000672715.1:ENST00000695598.1:ENST00000550338.6:ENST00000695599.1:ENST00000354858.11:ENST00000695600.1:ENST00000695601.1:ENST00000491241.2:ENST00000695602.1:ENST00000469238.2:ENST00000695603.1:ENST00000695604.1:ENST00000672308.1:ENST00000548033.5:ENST00000467905.5:ENST00000480134.5:ENST00000695605.1:ENST00000673291.1:ENST00000487289.1:ENST00000548559.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	31	2	1.93084	3.084195	4.23755	0.0443175	0.0263357	0.162302	0.122221
chr3	42551949	42552049	1670471	0	-	0.45	(0.44,0.476]	chr3	170703	34	UTR3	UTR3:EXON_MRNA:INTRON	SEC22C	ENSG00000093183.14	ENST00000264454.8:ENST00000423701.6:ENST00000451653.5:ENST00000273156.11:ENST00000417572.5:ENST00000449617.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	31	2	1.93084	3.084195	4.23755	0.0443175	0.0263357	0.162302	0.122221
chr7	27777507	27777606	3293728	0	+	0.464646	(0.44,0.476]	chr7	305978	51	INTRON	INTRON	TAX1BP1	ENSG00000106052.14	ENST00000543117.5:ENST00000433216.6:ENST00000265393.10:ENST00000409980.5:ENST00000416801.6:ENST00000396319.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	31	2	1.93084	3.084195	4.23755	0.0443175	0.0263357	0.162302	0.122221
chr11	118451191	118451291	4872268	0	+	0.39	(0.378,0.408]	chr11	454987	13	INTRON	INTRON	ENSG00000285827:KMT2A	ENSG00000285827.1:ENSG00000118058.24	ENST00000648261.1:ENST00000389506.10:ENST00000534358.8:ENST00000533790.3:ENST00000527869.7:ENST00000649690.2:ENST00000691053.1:ENST00000531904.6:ENST00000649699.1:ENST00000648029.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	115	2	2.95439	3.0841250000000002	3.21386	0.00148165	5.98458e-5	0.0349546	0.00636653
chr16	30770100	30770194	6339357	0	+	0.521277	(0.515,0.57]	chr16	607967	1	INTRON	INTRON	RNF40	ENSG00000103549.22	ENST00000324685.11:ENST00000357890.9:ENST00000563683.5:ENST00000493683.5:ENST00000567365.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	45	2	2.68833	3.0839600000000003	3.47959	0.0184931	8.38022e-4	0.108861	0.0263691
chr17	1885523	1885621	6546552	0	+	0.530612	(0.515,0.57]	chr17	635000	12	INTRON	INTRON	RPA1	ENSG00000132383.12	ENST00000254719.10:ENST00000574049.1	protein_coding	protein_coding	protein_coding	protein_coding	4	39	2	1.56838	3.0837600000000003	4.59914	0.0424458	0.00616166	0.161763	0.0676501
chr6	4029859	4029958	2789783	0	+	0.30303	(0.28,0.32]	chr6	263481	80	INTRON	INTRON	PRPF4B	ENSG00000112739.17	ENST00000480058.5:ENST00000337659.11	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	103	2	2.53475	3.083755	3.63276	0.00257029	0.00114475	0.0466761	0.0308149
chr9	135940159	135940259	4372346	0	-	0.44	(0.408,0.44]	chr9	402513	4	SS3_PROX	SS3_PROX:INTRON	UBAC1	ENSG00000130560.9	ENST00000371756.4:ENST00000489050.5:ENST00000465873.5:ENST00000471163.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	15	309	2	2.96755	3.08372	3.19989	7.93575e-6	3.34795e-6	0.00213186	0.0011922
chr4	67652399	67652499	2153965	0	-	0.33	(0.32,0.35]	chr4	212133	28	INTRON	INTRON	UBA6	ENSG00000033178.13	ENST00000322244.10	protein_coding	protein_coding	protein_coding	protein_coding	3	80	2	2.58753	3.08366	3.57979	0.00560122	0.00118589	0.0678837	0.0315652
chr1	245894152	245894252	674565	0	-	0.43	(0.408,0.44]	chr1	79681	299	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000366517.5:ENST00000366516.5:ENST00000490107.6:ENST00000470510.5:ENST00000493441.5:ENST00000488153.5:ENST00000492487.5:ENST00000391836.3:ENST00000464398.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	35	2	1.94273	3.0836	4.22447	0.0456237	0.0161655	0.149888	0.109464
chr21	44962556	44962656	7417687	0	+	0.41	(0.408,0.44]	chr21	756231	20	INTRON	INTRON	SLX9	ENSG00000160256.13	ENST00000397826.7:ENST00000458015.1:ENST00000291634.11:ENST00000479127.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	35	2	1.94273	3.0836	4.22447	0.0456237	0.0161655	0.149888	0.109464
chr7	32874102	32874199	3515444	0	-	0.525773	(0.515,0.57]	chr7	327768	29	INTRON	INTRON	KBTBD2	ENSG00000170852.12	ENST00000304056.9:ENST00000485611.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	59	2	2.96467	3.083535	3.2024	0.00322022	8.94279e-4	0.0507087	0.0273458
chr12	94406840	94406939	5389577	0	-	0.535354	(0.515,0.57]	chr12	513861	32	INTRON	INTRON	CEP83	ENSG00000173588.16	ENST00000397809.10:ENST00000339839.9:ENST00000547232.5:ENST00000547575.5:ENST00000549352.1:ENST00000551078.1:ENST00000551596.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	59	2	2.53845	3.08333	3.62821	0.00632226	4.12866e-4	0.0687526	0.0181365
chr10	69171465	69171563	4445034	0	+	0.326531	(0.32,0.35]	chr10	410068	3	UTR3	UTR3:EXON_MRNA	VPS26A	ENSG00000122958.15	ENST00000373382.5:ENST00000395098.5:ENST00000263559.11	protein_coding	protein_coding	protein_coding	protein_coding	7	177	2	2.9493	3.0832550000000003	3.21721	5.42962e-4	2.37842e-5	0.0215026	0.00382182
chr10	72486788	72486888	4645523	0	-	0.31	(0.28,0.32]	chr10	427402	88	INTRON	INTRON	MICU1	ENSG00000107745.20	ENST00000361114.10:ENST00000476605.7:ENST00000642044.1:ENST00000635239.1:ENST00000418483.6:ENST00000398763.8:ENST00000489666.2:ENST00000604238.2:ENST00000603011.5:ENST00000604529.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	37	2	2.0243	3.0832200000000003	4.14214	0.0579756	0.0364967	0.167723	0.153759
chrX	74219823	74219922	7840869	0	-	0.30303	(0.28,0.32]	chrX	799703	7	INTRON	INTRON	FTX	ENSG00000230590.12	ENST00000603672.5:ENST00000430772.6:ENST00000602776.6:ENST00000638681.1:ENST00000652319.1:ENST00000661133.1:ENST00000652071.1:ENST00000602812.6:ENST00000651703.1:ENST00000653018.1:ENST00000658448.1:ENST00000662240.1:ENST00000652527.1:ENST00000651451.1:ENST00000657611.1:ENST00000660481.1:ENST00000659574.1:ENST00000661084.1:ENST00000662494.1:ENST00000670936.1:ENST00000602420.6:ENST00000658203.1:ENST00000638985.1:ENST00000691187.1:ENST00000603037.2:ENST00000641360.1:ENST00000687056.1:ENST00000654870.2:ENST00000652540.1:ENST00000652331.2:ENST00000652013.1:ENST00000669263.1:ENST00000657070.1:ENST00000665069.1:ENST00000651936.1:ENST00000652496.1:ENST00000653874.2:ENST00000661335.1:ENST00000664123.1:ENST00000658439.1:ENST00000666535.1:ENST00000652970.1:ENST00000423992.3:ENST00000665313.2:ENST00000651140.1:ENST00000660100.1:ENST00000693483.1	lncRNA	lncRNA	lncRNA	lncRNA	2	37	2	2.0243	3.0832200000000003	4.14214	0.0579756	0.0364967	0.167723	0.153759
chr20	63274310	63274410	7299641	0	+	0.38	(0.378,0.408]	chr20	742744	1	SS5_PROX	SS5_PROX:INTRON	ARFGAP1	ENSG00000101199.13	ENST00000519273.6:ENST00000519604.5:ENST00000523114.5:ENST00000547204.5:ENST00000522959.5:ENST00000549047.5:ENST00000370283.9:ENST00000523460.5:ENST00000520485.5:ENST00000524192.6:ENST00000519531.5:ENST00000370275.8:ENST00000518601.6:ENST00000353546.7:ENST00000522403.6:ENST00000550188.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	86	2	2.84624	3.0831999999999997	3.32016	0.00268328	4.63696e-4	0.0464781	0.0195302
chr2	86441670	86441752	822932	0	+	0.573171	(0.57,1]	chr2	91888	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	KDM3A	ENSG00000115548.17	ENST00000452034.5:ENST00000409556.5:ENST00000312912.10:ENST00000441719.5:ENST00000409064.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	52	2	2.53502	3.0831299999999997	3.63124	6.60462e-4	2.87208e-4	0.023462	0.0150568
chr2	61478159	61478253	1130580	0	-	0.361702	(0.35,0.378]	chr2	121505	6	UTR3	UTR3:EXON_MRNA	XPO1	ENSG00000082898.19	ENST00000677110.1:ENST00000678113.1:ENST00000676553.1:ENST00000677556.1:ENST00000677814.1:ENST00000676771.1:ENST00000677803.1:ENST00000677239.1:ENST00000678790.1:ENST00000677928.1:ENST00000678182.1:ENST00000677150.1:ENST00000678172.1:ENST00000678360.1:ENST00000678081.1:ENST00000676889.1:ENST00000676783.1:ENST00000679035.1:ENST00000677422.1:ENST00000677417.1:ENST00000677813.1:ENST00000676999.1:ENST00000676667.1:ENST00000678263.1:ENST00000678877.1:ENST00000677933.1:ENST00000680228.1:ENST00000677289.1:ENST00000677190.1:ENST00000481073.6:ENST00000677476.1:ENST00000469337.2:ENST00000401558.7:ENST00000428210.5:ENST00000677290.1:ENST00000677850.1:ENST00000678640.1:ENST00000676778.1:ENST00000451765.6:ENST00000676789.1:ENST00000678741.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	60	1335	2	2.96439	3.0830349999999997	3.20168	1.31534e-6	1.98644e-8	7.46176e-4	5.14924e-5
chr2	61449983	61450083	1130346	0	-	0.45	(0.44,0.476]	chr2	121499	288	INTRON	INTRON	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000453133.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	39	2	1.92837	3.08296	4.23755	0.0263357	0.0222222	0.124303	0.122221
chr4	88893794	88893894	2201325	0	-	0.42	(0.408,0.44]	chr4	215969	374	INTRON	INTRON	FAM13A	ENSG00000138640.15	ENST00000264344.10:ENST00000511976.5:ENST00000502459.5:ENST00000512339.5:ENST00000511145.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	36	2	2.05947	3.0827050000000003	4.10594	0.0333232	0.0219367	0.134145	0.123836
chr13	112534472	112534572	5651170	0	-	0.51	(0.476,0.515]	chr13	538478	66	INTRON	INTRON	TUBGCP3	ENSG00000126216.15	ENST00000261965.8:ENST00000649778.1:ENST00000375669.7:ENST00000462580.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	68	2	2.49941	3.08253	3.66565	0.00811651	4.18031e-4	0.0766625	0.0182827
chr19	58299710	58299809	7107236	0	+	0.464646	(0.44,0.476]	chr19	713389	43	UTR3	UTR3:EXON_MRNA:INTRON	ZNF8:ZNF8-ERVK3-1	ENSG00000278129.2:ENSG00000267216.1	ENST00000621650.2:ENST00000591325.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	2	51	2	2.80275	3.08253	3.36231	0.0146513	0.00161678	0.0982604	0.0369204
chr7	72888833	72888933	3329884	0	+	0.29	(0.28,0.32]	chr7	309555	86	INTRON	INTRON	POM121	ENSG00000196313.13	ENST00000627934.3:ENST00000395270.5	protein_coding	protein_coding	protein_coding	protein_coding	2	66	2	2.51488	3.0825199999999997	3.65016	0.0380957	6.39301e-4	0.141678	0.0228666
chr1	15691700	15691800	34086	0	+	0.43	(0.408,0.44]	chr1	4144	67	INTRON	INTRON	PLEKHM2	ENSG00000116786.13	ENST00000375799.8:ENST00000375793.2:ENST00000462455.1:ENST00000642363.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	25	2	2.18807	3.08243	3.97679	0.0708044	0.0299485	0.184528	0.142135
chr11	86304506	86304601	4842384	0	+	0.421053	(0.408,0.44]	chr11	451806	6	INTRON	INTRON	HIKESHI	ENSG00000149196.17	ENST00000533986.5:ENST00000278483.8:ENST00000531485.5:ENST00000528004.5:ENST00000532270.5:ENST00000530208.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	25	2	2.18807	3.08243	3.97679	0.0708044	0.0299485	0.184528	0.142135
chr12	19474752	19474852	5091507	0	+	0.43	(0.408,0.44]	chr12	480980	10	INTRON	INTRON	AEBP2	ENSG00000139154.16	ENST00000538425.5:ENST00000541908.5:ENST00000266508.14:ENST00000398864.7:ENST00000673644.1:ENST00000360995.8:ENST00000673824.1	protein_coding	protein_coding	protein_coding	protein_coding	1	25	2	2.18807	3.08243	3.97679	0.0708044	0.0299485	0.184528	0.142135
chr18	9367362	9367462	6870770	0	+	0.41	(0.408,0.44]	chr18	680672	69	INTRON	INTRON	TWSG1	ENSG00000128791.12	ENST00000583147.5:ENST00000262120.10:ENST00000581641.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	25	2	2.18807	3.08243	3.97679	0.0708044	0.0299485	0.184528	0.142135
chr19	14765013	14765110	7145636	0	-	0.43299	(0.408,0.44]	chr19	721578	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ADGRE2	ENSG00000127507.18	ENST00000315576.8:ENST00000360222.8:ENST00000596991.6:ENST00000392965.7:ENST00000594294.5:ENST00000594076.5:ENST00000595839.5:ENST00000601345.5:ENST00000595208.5:ENST00000392962.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	25	2	2.18807	3.08243	3.97679	0.0708044	0.0299485	0.184528	0.142135
chr2	10652198	10652297	1066023	0	-	0.424242	(0.408,0.44]	chr2	113737	75	INTRON	INTRON	NOL10	ENSG00000115761.17	ENST00000695464.1:ENST00000695470.1:ENST00000695467.1:ENST00000695468.1:ENST00000695469.1:ENST00000695466.1:ENST00000381685.10:ENST00000695471.1:ENST00000345985.7:ENST00000538384.5:ENST00000695472.1:ENST00000695473.1:ENST00000695475.1:ENST00000695476.1:ENST00000695477.1:ENST00000695478.1:ENST00000695479.1:ENST00000431319.2:ENST00000695480.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	25	2	2.18807	3.08243	3.97679	0.0708044	0.0299485	0.184528	0.142135
chr22	41352146	41352243	7523230	0	+	0.43299	(0.408,0.44]	chr22	768892	1	INTRON	INTRON	ZC3H7B	ENSG00000100403.12	ENST00000352645.5	protein_coding	protein_coding	protein_coding	protein_coding	1	25	2	2.18807	3.08243	3.97679	0.0708044	0.0299485	0.184528	0.142135
chr4	85755916	85756016	1991305	0	+	0.43	(0.408,0.44]	chr4	198951	323	INTRON	INTRON	ARHGAP24	ENSG00000138639.18	ENST00000395184.6:ENST00000503995.5:ENST00000512201.5	protein_coding	protein_coding	protein_coding	protein_coding	1	25	2	2.18807	3.08243	3.97679	0.0708044	0.0299485	0.184528	0.142135
chr5	37026727	37026827	2339966	0	+	0.44	(0.408,0.44]	chr5	226115	4	SS5_PROX	SS5_PROX:INTRON	NIPBL	ENSG00000164190.19	ENST00000282516.13:ENST00000448238.2:ENST00000652901.1	protein_coding	protein_coding	protein_coding	protein_coding	1	25	2	2.18807	3.08243	3.97679	0.0708044	0.0299485	0.184528	0.142135
chr5	145478214	145478314	2743063	0	-	0.42	(0.408,0.44]	chr5	258670	45	INTRON	INTRON	PRELID2	ENSG00000186314.12	ENST00000510259.5	protein_coding	processed_transcript	protein_coding	processed_transcript	1	25	2	2.18807	3.08243	3.97679	0.0708044	0.0299485	0.184528	0.142135
chr7	119569290	119569390	3627029	0	-	0.42	(0.408,0.44]	chr7	337315	688	INTRON	INTRON	LINC02476	ENSG00000225546.6	ENST00000660268.1	lncRNA	lncRNA	lncRNA	lncRNA	1	25	2	2.18807	3.08243	3.97679	0.0708044	0.0299485	0.184528	0.142135
chr7	133435102	133435202	3419989	0	+	0.41	(0.408,0.44]	chr7	319348	383	INTRON	INTRON	EXOC4	ENSG00000131558.15	ENST00000486013.5:ENST00000393161.6:ENST00000253861.5:ENST00000462055.5:ENST00000486409.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	25	2	2.18807	3.08243	3.97679	0.0708044	0.0299485	0.184528	0.142135
chr9	95216836	95216936	4291026	0	-	0.42	(0.408,0.44]	chr9	394734	104	INTRON	INTRON	FANCC	ENSG00000158169.14	ENST00000289081.8:ENST00000375305.6:ENST00000649334.1:ENST00000490972.7:ENST00000649701.1:ENST00000696261.1:ENST00000636777.1:ENST00000474949.1:ENST00000647778.1:ENST00000433829.1:ENST00000647882.1:ENST00000649519.1:ENST00000650176.1:ENST00000648415.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	25	2	2.18807	3.08243	3.97679	0.0708044	0.0299485	0.184528	0.142135
chr9	128234935	128235035	4203387	0	+	0.44	(0.408,0.44]	chr9	384089	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	DNM1	ENSG00000106976.21	ENST00000372923.8:ENST00000341179.11:ENST00000475805.5:ENST00000393594.7:ENST00000628346.2:ENST00000486160.3:ENST00000627543.2:ENST00000627061.2:ENST00000634267.2:ENST00000637999.1:ENST00000441149.6:ENST00000482638.6:ENST00000463998.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	25	2	2.18807	3.08243	3.97679	0.0708044	0.0299485	0.184528	0.142135
chr6	53307089	53307189	3107770	0	-	0.4	(0.378,0.408]	chr6	291049	110	INTRON	INTRON	ELOVL5	ENSG00000012660.14	ENST00000370918.8:ENST00000542638.5:ENST00000304434.11:ENST00000485336.5:ENST00000465983.5:ENST00000486973.1:ENST00000370913.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	33	2	2.17608	3.082375	3.98867	0.0507	0.0218783	0.156383	0.123836
chr2	32208504	32208602	730220	0	+	0.489796	(0.476,0.515]	chr2	84220	12	INTRON	INTRON	SLC30A6	ENSG00000152683.14	ENST00000357055.7:ENST00000435660.5:ENST00000282587.9:ENST00000449777.5:ENST00000454324.5:ENST00000379343.6:ENST00000406369.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	51	2	2.7646	3.0823150000000004	3.40003	0.0162075	0.00139193	0.101453	0.0341261
chr1	70264432	70264531	479955	0	-	0.333333	(0.32,0.35]	chr1	57702	12	INTRON	INTRON	ANKRD13C	ENSG00000118454.13	ENST00000370944.9:ENST00000262346.6:ENST00000464236.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	25	2	2.21917	3.08223	3.94529	0.0693433	0.0641245	0.199279	0.184298
chr1	167334118	167334217	245993	0	+	0.333333	(0.32,0.35]	chr1	29298	12	INTRON	INTRON	POU2F1	ENSG00000143190.23	ENST00000559038.5:ENST00000367866.7:ENST00000557909.5:ENST00000271411.8:ENST00000429375.6:ENST00000560232.6:ENST00000442313.5:ENST00000367865.5:ENST00000492850.5:ENST00000541643.7:ENST00000648671.1:ENST00000367862.9:ENST00000420254.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	25	2	2.21917	3.08223	3.94529	0.0693433	0.0641245	0.199279	0.184298
chr1	230239716	230239815	335808	0	+	0.333333	(0.32,0.35]	chr1	38956	26	INTRON	INTRON	GALNT2	ENSG00000143641.10	ENST00000494106.1:ENST00000366672.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	25	2	2.21917	3.08223	3.94529	0.0693433	0.0641245	0.199279	0.184298
chr10	74354940	74355040	4457810	0	+	0.34	(0.32,0.35]	chr10	411566	153	INTRON	INTRON	ADK	ENSG00000156110.15	ENST00000672429.1:ENST00000539909.6:ENST00000286621.7:ENST00000673352.1:ENST00000673310.1:ENST00000672920.1:ENST00000672394.1:ENST00000372734.5:ENST00000673027.1:ENST00000541550.6:ENST00000672604.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	25	2	2.21917	3.08223	3.94529	0.0693433	0.0641245	0.199279	0.184298
chr11	65352914	65353010	4805387	0	+	0.322917	(0.32,0.35]	chr11	446481	13	UTR3	UTR3:EXON_MRNA	DPF2	ENSG00000133884.10	ENST00000528416.6:ENST00000415073.6:ENST00000252268.8:ENST00000524666.5:ENST00000532052.1:ENST00000531989.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	25	2	2.21917	3.08223	3.94529	0.0693433	0.0641245	0.199279	0.184298
chr14	34868805	34868905	5868379	0	-	0.33	(0.32,0.35]	chr14	557415	61	INTRON	INTRON	BAZ1A	ENSG00000198604.11	ENST00000358716.8:ENST00000360310.6:ENST00000382422.6	protein_coding	protein_coding	protein_coding	protein_coding	1	25	2	2.21917	3.08223	3.94529	0.0693433	0.0641245	0.199279	0.184298
chr15	48779600	48779700	6166362	0	-	0.34	(0.32,0.35]	chr15	587640	62	INTRON	INTRON	CEP152	ENSG00000103995.14	ENST00000380950.7:ENST00000399334.7:ENST00000325747.9:ENST00000560322.5	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay	1	25	2	2.21917	3.08223	3.94529	0.0693433	0.0641245	0.199279	0.184298
chr15	49215478	49215577	6019568	0	+	0.333333	(0.32,0.35]	chr15	573700	139	INTRON	INTRON	GALK2	ENSG00000156958.15	ENST00000559883.5:ENST00000559963.5:ENST00000327171.7:ENST00000560654.5:ENST00000558775.5:ENST00000561074.5:ENST00000559040.1:ENST00000396509.6:ENST00000558956.5:ENST00000559208.5:ENST00000560031.6:ENST00000560119.5:ENST00000558145.5:ENST00000544523.5:ENST00000560138.5:ENST00000559423.5:ENST00000559454.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	25	2	2.21917	3.08223	3.94529	0.0693433	0.0641245	0.199279	0.184298
chr17	3822503	3822601	6707963	0	-	0.326531	(0.32,0.35]	chr17	656998	1	EXON_LNCRNA	EXON_LNCRNA:SS3_PROX:INTRON	NCBP3	ENSG00000074356.17	ENST00000389005.6:ENST00000574911.5:ENST00000575815.5:ENST00000577169.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	25	2	2.21917	3.08223	3.94529	0.0693433	0.0641245	0.199279	0.184298
chr17	31101966	31102066	6591203	0	+	0.33	(0.32,0.35]	chr17	641053	62	INTRON	INTRON	NF1	ENSG00000196712.20	ENST00000696138.1:ENST00000356175.7:ENST00000487476.5:ENST00000691014.1:ENST00000358273.9:ENST00000431387.8:ENST00000579081.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	25	2	2.21917	3.08223	3.94529	0.0693433	0.0641245	0.199279	0.184298
chr2	118090556	118090655	855204	0	+	0.323232	(0.32,0.35]	chr2	96031	15	INTRON	INTRON	INSIG2	ENSG00000125629.16	ENST00000411929.5:ENST00000245787.9:ENST00000485520.5:ENST00000471186.5:ENST00000467223.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	25	2	2.21917	3.08223	3.94529	0.0693433	0.0641245	0.199279	0.184298
chr2	183030593	183030693	1285955	0	-	0.35	(0.32,0.35]	chr2	135438	52	INTRON	INTRON	NCKAP1	ENSG00000061676.15	ENST00000361354.9:ENST00000360982.2	protein_coding	protein_coding	protein_coding	protein_coding	1	25	2	2.21917	3.08223	3.94529	0.0693433	0.0641245	0.199279	0.184298
chr3	194432080	194432175	1890629	0	-	0.326316	(0.32,0.35]	chr3	189154	3	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	ATP13A3	ENSG00000133657.17	ENST00000687055.1:ENST00000645538.1:ENST00000645319.2:ENST00000690810.1:ENST00000645621.1:ENST00000685123.1:ENST00000642744.2:ENST00000439040.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	25	2	2.21917	3.08223	3.94529	0.0693433	0.0641245	0.199279	0.184298
chr6	15477012	15477112	2825261	0	+	0.35	(0.32,0.35]	chr6	265218	79	INTRON	INTRON	JARID2	ENSG00000008083.14	ENST00000341776.7:ENST00000397311.4	protein_coding	protein_coding	protein_coding	protein_coding	1	25	2	2.21917	3.08223	3.94529	0.0693433	0.0641245	0.199279	0.184298
chr6	111010611	111010710	2939591	0	+	0.323232	(0.32,0.35]	chr6	276877	21	INTRON	INTRON	RPF2	ENSG00000197498.13	ENST00000368864.8:ENST00000441448.7:ENST00000607388.1:ENST00000425871.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	25	2	2.21917	3.08223	3.94529	0.0693433	0.0641245	0.199279	0.184298
chr6	167853973	167854072	3034608	0	+	0.323232	(0.32,0.35]	chr6	282711	257	INTRON	INTRON	AFDN	ENSG00000130396.21	ENST00000683244.1:ENST00000400825.8:ENST00000351017.9:ENST00000344191.8:ENST00000392112.5:ENST00000392108.7:ENST00000400824.8:ENST00000400822.7:ENST00000447894.6:ENST00000366809.6:ENST00000366806.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	25	2	2.21917	3.08223	3.94529	0.0693433	0.0641245	0.199279	0.184298
chr7	64817651	64817751	3320582	0	+	0.33	(0.32,0.35]	chr7	308722	16	INTRON	INTRON	ZNF138	ENSG00000197008.10	ENST00000359735.7:ENST00000440155.6:ENST00000494380.5:ENST00000307355.12:ENST00000437743.1:ENST00000440598.2:ENST00000430838.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	25	2	2.21917	3.08223	3.94529	0.0693433	0.0641245	0.199279	0.184298
chr8	60542751	60542851	3758058	0	+	0.33	(0.32,0.35]	chr8	349495	251	INTRON	INTRON	RAB2A	ENSG00000104388.15	ENST00000531289.5:ENST00000262646.12:ENST00000481569.1:ENST00000529579.5:ENST00000466595.5:ENST00000429861.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	25	2	2.21917	3.08223	3.94529	0.0693433	0.0641245	0.199279	0.184298
chr12	132564995	132565095	5251550	0	+	0.52	(0.515,0.57]	chr12	499472	44	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1:ENST00000539264.5:ENST00000543360.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	34	2	1.7492	3.08209	4.41498	0.0382504	0.0106866	0.15832	0.0861859
chr1	86968348	86968448	154131	0	+	0.34	(0.32,0.35]	chr1	16962	95	INTRON	INTRON	HS2ST1	ENSG00000153936.18	ENST00000370550.10:ENST00000370551.8:ENST00000687893.1:ENST00000693745.1:ENST00000689904.1:ENST00000690674.1:ENST00000591456.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	149	2	2.19707	3.08208	3.96709	0.00625395	5.14579e-6	0.0684171	0.00155501
chr1	227734377	227734454	651767	0	-	0.506494	(0.476,0.515]	chr1	77129	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	JMJD4	ENSG00000081692.13	ENST00000620518.5:ENST00000438896.3:ENST00000480590.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	51	2	3.01197	3.081995	3.15202	0.00633162	0.00455841	0.0722266	0.0595107
chr12	93403563	93403662	5189203	0	+	0.494949	(0.476,0.515]	chr12	490816	43	UTR3	UTR3:EXON_MRNA	NUDT4	ENSG00000173598.14	ENST00000337179.9:ENST00000415493.7	protein_coding	protein_coding	protein_coding	protein_coding	2	51	2	3.01197	3.081995	3.15202	0.00633162	0.00455841	0.0722266	0.0595107
chr5	54061363	54061463	2618419	0	-	0.47	(0.44,0.476]	chr5	248837	132	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	152	2	2.95797	3.081975	3.20598	1.34373e-4	5.9647e-5	0.0105918	0.00635227
chr15	82424052	82424151	6076236	0	+	0.424242	(0.408,0.44]	chr15	578791	36	INTRON	INTRON	ENSG00000278202	ENSG00000278202.1	ENST00000613086.1	lncRNA	lncRNA	lncRNA	lncRNA	3	70	2	3.00595	3.08197	3.15799	0.00781452	3.8998e-4	0.0759016	0.0177751
chr15	80099575	80099675	6071438	0	+	0.41	(0.408,0.44]	chr15	578328	6	INTRON	INTRON	ZFAND6	ENSG00000086666.19	ENST00000613266.4:ENST00000561060.5:ENST00000559157.5:ENST00000261749.11:ENST00000561012.5:ENST00000564367.5:ENST00000558494.5:ENST00000618205.4:ENST00000560470.5:ENST00000560228.5:ENST00000559835.5:ENST00000559775.5:ENST00000558688.5:ENST00000560976.5:ENST00000560392.5:ENST00000558390.5:ENST00000558272.5:ENST00000557793.1:ENST00000616533.4:ENST00000558087.5:ENST00000558997.5:ENST00000558724.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	155	2	1.96803	3.08193	4.19583	0.00573171	6.61036e-7	0.0657377	4.48355e-4
chr4	734202	734293	1908077	0	+	0.604396	(0.57,1]	chr4	191229	1	UTR3	UTR3:EXON_MRNA:SS3_PROX:SS5_PROX:INTRON	PCGF3	ENSG00000185619.18	ENST00000419774.5:ENST00000362003.9:ENST00000470161.6:ENST00000427463.5:ENST00000482726.5:ENST00000400151.6:ENST00000430644.5:ENST00000484141.5:ENST00000440452.5:ENST00000433814.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	50	2	2.81057	3.081925	3.35328	0.00169295	8.52328e-5	0.0381936	0.00825602
chr10	35127767	35127867	4422712	0	+	0.38	(0.378,0.408]	chr10	407754	2	SS5_PROX	SS5_PROX:INTRON	CREM	ENSG00000095794.20	ENST00000474362.5:ENST00000374721.7:ENST00000496626.5:ENST00000685392.1:ENST00000482646.5:ENST00000489388.5:ENST00000374726.7:ENST00000461968.5:ENST00000490460.5:ENST00000466251.5:ENST00000482633.5:ENST00000495960.5:ENST00000686585.1:ENST00000429130.7:ENST00000469949.6:ENST00000460270.5:ENST00000496019.5:ENST00000354759.7:ENST00000489321.5:ENST00000374728.7:ENST00000427847.6:ENST00000345491.7:ENST00000487132.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	72	2	2.26009	3.0819	3.90371	0.0188651	1.30398e-4	0.108861	0.00983066
chr5	131720915	131721015	2719981	0	-	0.34	(0.32,0.35]	chr5	255718	11	INTRON	INTRON	FNIP1	ENSG00000217128.13	ENST00000510461.6:ENST00000307954.12:ENST00000307968.11:ENST00000511848.1	protein_coding	protein_coding	protein_coding	protein_coding	4	99	2	1.8526	3.08183	4.31106	0.0332438	1.85225e-5	0.134145	0.00329554
chr13	28143085	28143185	5460874	0	+	0.4	(0.378,0.408]	chr13	523235	36	INTRON	INTRON	PAN3	ENSG00000152520.14	ENST00000503791.5:ENST00000380958.8:ENST00000399613.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	160	2	1.97234	3.0817	4.19106	0.00589072	7.56377e-7	0.067031	4.88078e-4
chr12	64626536	64626636	5155158	0	+	0.42	(0.408,0.44]	chr12	488093	150	INTRON	INTRON	RASSF3	ENSG00000153179.13	ENST00000637125.1:ENST00000542104.6:ENST00000283172.8:ENST00000336061.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	31	2	1.93243	3.081695	4.23096	0.0441194	0.0278028	0.162255	0.123904
chr2	8958569	8958642	1063116	0	-	0.424658	(0.408,0.44]	chr2	113378	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	MBOAT2	ENSG00000143797.12	ENST00000305997.8:ENST00000486484.5:ENST00000477073.5:ENST00000474341.5:ENST00000462696.1:ENST00000460786.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	31	2	1.93243	3.081695	4.23096	0.0441194	0.0278028	0.162255	0.123904
chrX	18316351	18316451	7770669	0	-	0.42	(0.408,0.44]	chrX	794182	108	INTRON	INTRON	SCML2	ENSG00000102098.19	ENST00000251900.9	protein_coding	protein_coding	protein_coding	protein_coding	2	31	2	1.93243	3.081695	4.23096	0.0441194	0.0278028	0.162255	0.123904
chr15	94918525	94918625	6105819	0	+	0.48	(0.476,0.515]	chr15	581682	136	INTRON	INTRON	ENSG00000277654	ENSG00000277654.6	ENST00000618611.4:ENST00000648065.1:ENST00000618377.1:ENST00000621842.4:ENST00000615751.4:ENST00000614581.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	2	31	2	1.91817	3.08159	4.24501	0.0459211	0.0247713	0.164984	0.12011
chr19	19415717	19415817	7035446	0	+	0.5	(0.476,0.515]	chr19	701433	93	INTRON	INTRON	GATAD2A	ENSG00000167491.18	ENST00000494516.6:ENST00000360315.7:ENST00000609040.5:ENST00000417582.6:ENST00000683918.1:ENST00000448576.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	31	2	1.91817	3.08159	4.24501	0.0459211	0.0247713	0.164984	0.12011
chr6	15327023	15327123	2823757	0	+	0.48	(0.476,0.515]	chr6	265192	121	INTRON	INTRON	JARID2	ENSG00000008083.14	ENST00000341776.7:ENST00000397311.4	protein_coding	protein_coding	protein_coding	protein_coding	2	31	2	1.91817	3.08159	4.24501	0.0459211	0.0247713	0.164984	0.12011
chr7	156730705	156730804	3686372	0	-	0.484848	(0.476,0.515]	chr7	342011	16	INTRON	INTRON	LMBR1	ENSG00000105983.23	ENST00000353442.10:ENST00000448926.5:ENST00000415428.5:ENST00000454132.5:ENST00000434503.5:ENST00000461603.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	31	2	1.91817	3.08159	4.24501	0.0459211	0.0247713	0.164984	0.12011
chr19	19134583	19134683	7153996	0	-	0.38	(0.378,0.408]	chr19	723133	4	SS5_PROX	SS5_PROX:INTRON	TMEM161A	ENSG00000064545.15	ENST00000162044.14:ENST00000450333.6:ENST00000587406.5:ENST00000587985.6:ENST00000589448.5:ENST00000587583.6:ENST00000587096.5:ENST00000590216.6:ENST00000592369.1:ENST00000587915.1:ENST00000592147.1:ENST00000586357.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	72	2	2.73557	3.081535	3.4275	0.00360869	0.00126053	0.0533855	0.03295
chr3	49381775	49381875	1693760	0	-	0.46	(0.44,0.476]	chr3	173707	58	INTRON	INTRON	RHOA	ENSG00000067560.14	ENST00000678200.1:ENST00000422781.6:ENST00000676712.2:ENST00000678921.2:ENST00000445425.6:ENST00000454011.7:ENST00000418115.6:ENST00000679208.1:ENST00000677684.1:ENST00000431929.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	48	2	1.40212	3.0814	4.76068	0.0524678	0.00653414	0.178047	0.0699952
chr13	32520181	32520279	5572662	0	-	0.316327	(0.28,0.32]	chr13	532556	18	INTRON	INTRON	N4BP2L2	ENSG00000244754.9	ENST00000357505.10:ENST00000399396.7:ENST00000504114.5:ENST00000509076.1:ENST00000446957.6:ENST00000674456.1:ENST00000674161.1:ENST00000674422.1:ENST00000674272.1:ENST00000674452.1:ENST00000674384.1:ENST00000505213.5:ENST00000674219.1:ENST00000267068.5:ENST00000674349.1:ENST00000674428.1:ENST00000503814.2:ENST00000674465.1:ENST00000674421.1:ENST00000674180.1:ENST00000674297.1:ENST00000674293.1:ENST00000674480.1:ENST00000674377.1:ENST00000674437.1:ENST00000674327.1:ENST00000674399.1:ENST00000674196.1:ENST00000674163.1:ENST00000511143.5:ENST00000674484.1:ENST00000475731.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	64	2	2.73077	3.081315	3.43186	0.0220748	0.00160646	0.115395	0.0367961
chr13	79380206	79380306	5626149	0	-	0.29	(0.28,0.32]	chr13	536667	9	INTRON	INTRON	RBM26	ENSG00000139746.16	ENST00000438737.3:ENST00000438724.5:ENST00000622611.4:ENST00000267229.11:ENST00000472143.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	64	2	2.73077	3.081315	3.43186	0.0220748	0.00160646	0.115395	0.0367961
chr17	66309623	66309723	6662367	0	+	0.4	(0.378,0.408]	chr17	650320	31	INTRON	INTRON	PRKCA	ENSG00000154229.12	ENST00000413366.8:ENST00000578063.5:ENST00000583361.1:ENST00000284384.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	71	2	2.51733	3.08131	3.64529	0.00808319	4.71767e-4	0.0766625	0.0196294
chr8	38199357	38199457	3735307	0	+	0.34	(0.32,0.35]	chr8	347049	62	INTRON	INTRON	BAG4	ENSG00000156735.11	ENST00000521282.1:ENST00000432471.6:ENST00000287322.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	61	2	2.51061	3.08124	3.65187	0.0364463	5.49434e-4	0.138959	0.0213049
chr14	30952039	30952139	5857126	0	-	0.5	(0.476,0.515]	chr14	556493	7	INTRON	INTRON	STRN3	ENSG00000196792.12	ENST00000355683.9:ENST00000357479.10:ENST00000555358.5:ENST00000555152.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	53	2	1.32251	3.081065	4.83962	0.0533705	0.00480934	0.179876	0.0602209
chr16	89355266	89355365	6542230	0	-	0.626263	(0.57,1]	chr16	634215	116	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000647238.1:ENST00000644045.1:ENST00000643147.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	24	2	1.79063	3.080995	4.37136	0.0356001	0.00345135	0.15159	0.0517761
chr21	8403562	8403662	7366585	0	+	0.54	(0.515,0.57]	chr21	751814	191	INTRON	INTRON	ENSG00000280441	ENSG00000280441.3	ENST00000623860.3:ENST00000651813.1:ENST00000652379.1:ENST00000651958.1	lncRNA	lncRNA	lncRNA	lncRNA	8	131	2	2.42025	3.080845	3.74144	4.96659e-4	1.04004e-5	0.0206993	0.00235262
chr1	8811607	8811706	373727	0	-	0.484848	(0.476,0.515]	chr1	43563	47	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000656437.1:ENST00000659924.1	protein_coding	protein_coding	protein_coding	protein_coding	6	128	2	2.4029	3.0807700000000002	3.75864	0.0016811	2.22994e-5	0.0381232	0.00385749
chr1	162574787	162574886	238451	0	+	0.262626	[0,0.28]	chr1	28704	81	INTRON	INTRON	UAP1	ENSG00000117143.14	ENST00000367925.6:ENST00000367926.9	protein_coding	protein_coding	protein_coding	protein_coding	6	152	2	1.91432	3.080765	4.24721	0.0152294	5.15143e-5	0.0996307	0.00585477
chr1	213257957	213258057	312781	0	+	0.42	(0.408,0.44]	chr1	35979	149	INTRON	INTRON	RPS6KC1	ENSG00000136643.12	ENST00000615329.4:ENST00000543354.5:ENST00000614059.4:ENST00000543470.5:ENST00000366960.8:ENST00000366959.4:ENST00000490299.5:ENST00000491616.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	52	2	2.6542	3.080755	3.50731	0.0227514	8.5918e-4	0.117618	0.0265787
chr4	17835311	17835407	1927311	0	+	0.510417	(0.476,0.515]	chr4	193778	4	INTRON	INTRON	NCAPG	ENSG00000109805.10	ENST00000251496.7:ENST00000514176.5:ENST00000510063.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	68	2	2.45598	3.080755	3.70553	0.00945755	3.44823e-4	0.0817766	0.0165103
chr10	96532650	96532750	4673879	0	-	0.4	(0.378,0.408]	chr10	430674	2	SS5_PROX	SS5_PROX:INTRON	TM9SF3	ENSG00000077147.16	ENST00000371142.9:ENST00000649367.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	40	2	1.94559	3.08061	4.21563	0.0315429	0.0211434	0.13151	0.122929
chr12	110295990	110296071	5226247	0	+	0.395062	(0.378,0.408]	chr12	495241	1	EXON_LNCRNA	EXON_LNCRNA:INTRON	ATP2A2	ENSG00000174437.18	ENST00000552636.2:ENST00000308664.10:ENST00000539276.7:ENST00000377685.9:ENST00000548169.2:ENST00000550248.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	40	2	1.94559	3.08061	4.21563	0.0315429	0.0211434	0.13151	0.122929
chr1	29166228	29166312	410285	0	-	0.416667	(0.408,0.44]	chr1	49410	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SRSF4	ENSG00000116350.18	ENST00000373795.7:ENST00000691479.1:ENST00000634348.1:ENST00000466448.4:ENST00000605204.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	18	373	2	3.06993	3.08056	3.09119	5.96071e-6	1.04828e-6	0.0018374	5.87298e-4
chr1	16343372	16343472	382529	0	-	0.47	(0.44,0.476]	chr1	44888	276	INTRON	INTRON	FBXO42	ENSG00000037637.11	ENST00000375592.8	protein_coding	protein_coding	protein_coding	protein_coding	3	40	2	2.03266	3.080545	4.12843	0.0337192	0.0155853	0.134145	0.109411
chr6	143182271	143182371	2976402	0	+	0.49	(0.476,0.515]	chr6	279149	167	INTRON	INTRON	AIG1	ENSG00000146416.19	ENST00000367601.8:ENST00000447498.5:ENST00000646199.1:ENST00000357847.9:ENST00000629020.2:ENST00000275235.8:ENST00000494282.6:ENST00000458219.1:ENST00000470265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	71	2	2.9698	3.080495	3.19119	0.00325748	0.00124841	0.0524329	0.0323336
chr22	49615644	49615744	7602237	0	-	0.64	(0.57,1]	chr22	778570	200	INTRON	INTRON	MIR3667HG	ENSG00000188511.13	ENST00000414287.5:ENST00000416411.1:ENST00000689875.1	lncRNA	lncRNA	lncRNA	lncRNA	3	38	2	2.33295	3.0804799999999997	3.82801	0.0122896	9.41714e-5	0.091087	0.00813008
chr11	87326926	87327026	4845716	0	+	0.36	(0.35,0.378]	chr11	451926	57	UTR3	UTR3:EXON_MRNA	TMEM135	ENSG00000166575.17	ENST00000305494.6	protein_coding	protein_coding	protein_coding	protein_coding	4	45	2	1.4414	3.080465	4.71953	0.0629423	0.0103314	0.196658	0.0850389
chrX	47151284	47151384	7655138	0	+	0.36	(0.35,0.378]	chrX	783085	34	INTRON	INTRON	RBM10	ENSG00000182872.16	ENST00000377604.8:ENST00000345781.10:ENST00000628161.2:ENST00000329236.8	protein_coding	protein_coding	protein_coding	protein_coding	4	45	2	1.4414	3.080465	4.71953	0.0629423	0.0103314	0.196658	0.0850389
chr16	68177000	68177100	6371148	0	+	0.28	[0,0.28]	chr16	612227	21	INTRON	INTRON	NFATC3	ENSG00000072736.19	ENST00000563319.5:ENST00000569766.5:ENST00000553077.5:ENST00000566301.5:ENST00000549350.5:ENST00000575270.5:ENST00000346183.8:ENST00000539828.6:ENST00000349223.9:ENST00000329524.8:ENST00000379165.8:ENST00000562926.5:ENST00000570212.5:ENST00000563796.5:ENST00000567152.5:ENST00000563288.5:ENST00000535127.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	72	2	2.86008	3.0804549999999997	3.30083	0.0177015	0.00319246	0.105304	0.0520345
chr5	10400383	10400483	2318126	0	+	0.31	(0.28,0.32]	chr5	224669	2	SS3_PROX	SS3_PROX:INTRON	MARCHF6	ENSG00000145495.16	ENST00000274140.10:ENST00000449913.6:ENST00000511802.5:ENST00000503788.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	13	326	2	2.84088	3.0802899999999998	3.3197	4.53943e-5	1.94641e-5	0.00583057	0.0033954
chr4	99000823	99000922	2002759	0	+	0.535354	(0.515,0.57]	chr4	199796	30	INTRON	INTRON	METAP1	ENSG00000164024.12	ENST00000510209.5:ENST00000296411.11:ENST00000507537.5:ENST00000506238.5:ENST00000625963.1:ENST00000503247.5:ENST00000510107.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	44	2	2.96814	3.07996	3.19178	0.00756432	0.00289534	0.0749063	0.0494641
chr14	30968503	30968603	5857294	0	-	0.57	(0.515,0.57]	chr14	556508	41	INTRON	INTRON	STRN3	ENSG00000196792.12	ENST00000355683.9:ENST00000357479.10:ENST00000555358.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	30	2	1.8707	3.079955	4.28921	0.0523213	0.00990051	0.160182	0.0877296
chr14	58248232	58248332	5730936	0	+	0.53	(0.515,0.57]	chr14	544081	4	SS5_PROX	SS5_PROX:INTRON	PSMA3	ENSG00000100567.13	ENST00000216455.9:ENST00000554812.5:ENST00000553665.5:ENST00000557087.5:ENST00000555931.5:ENST00000412908.6:ENST00000555743.1:ENST00000557508.5:ENST00000556321.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	30	2	1.8707	3.079955	4.28921	0.0523213	0.00990051	0.160182	0.0877296
chr14	99452784	99452884	5966943	0	-	0.56	(0.515,0.57]	chr14	566915	385	INTRON	INTRON	SETD3	ENSG00000183576.13	ENST00000331768.10:ENST00000446066.5:ENST00000453764.5:ENST00000329331.7:ENST00000630307.2:ENST00000436070.6:ENST00000357563.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	30	2	1.8707	3.079955	4.28921	0.0523213	0.00990051	0.160182	0.0877296
chr3	50111468	50111567	1424730	0	+	0.555556	(0.515,0.57]	chr3	150190	3	INTRON	INTRON	RBM5	ENSG00000003756.17	ENST00000347869.8:ENST00000464087.6:ENST00000441812.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	30	2	1.8707	3.079955	4.28921	0.0523213	0.00990051	0.160182	0.0877296
chr6	143847498	143847595	2981439	0	+	0.515464	(0.515,0.57]	chr6	279364	9	INTRON	INTRON	LTV1	ENSG00000135521.9	ENST00000367576.6	protein_coding	protein_coding	protein_coding	protein_coding	5	80	2	2.31394	3.079885	3.84583	0.00231716	1.82082e-4	0.0442594	0.0122264
chr7	75477764	75477863	3558847	0	-	0.323232	(0.32,0.35]	chr7	331555	22	INTRON	INTRON	POM121C:ENSG00000242073	ENSG00000272391.6:ENSG00000242073.2	ENST00000615331.5:ENST00000398379.2:ENST00000415277.2	protein_coding	protein_coding	protein_coding:transcribed_unprocessed_pseudogene	protein_coding:transcribed_unprocessed_pseudogene	2	59	2	2.74415	3.0798449999999997	3.41554	0.0198267	0.00153152	0.109608	0.0361484
chr1	8755636	8755736	373164	0	-	0.33	(0.32,0.35]	chr1	43549	19	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000656437.1:ENST00000659924.1	protein_coding	protein_coding	protein_coding	protein_coding	3	47	2	1.60297	3.07979	4.55661	0.0647328	0.00927858	0.179192	0.0855292
chr16	22284588	22284687	6321480	0	+	0.30303	(0.28,0.32]	chr16	605178	7	UTR3	UTR3:EXON_MRNA	EEF2K	ENSG00000103319.12	ENST00000263026.10	protein_coding	protein_coding	protein_coding	protein_coding	7	178	2	2.8218	3.07979	3.33778	4.17819e-4	1.35646e-4	0.0189084	0.0100405
chr9	124673307	124673407	4348235	0	-	0.33	(0.32,0.35]	chr9	399255	776	INTRON	INTRON	NR6A1	ENSG00000148200.17	ENST00000487099.7:ENST00000373584.7:ENST00000416460.6:ENST00000344523.8	protein_coding	protein_coding	protein_coding	protein_coding	3	47	2	1.60297	3.07979	4.55661	0.0647328	0.00927858	0.179192	0.0855292
chr19	52645762	52645861	7206681	0	-	0.424242	(0.408,0.44]	chr19	731394	75	INTRON	INTRON	ZNF83	ENSG00000167766.20	ENST00000600714.5:ENST00000601257.5:ENST00000594682.6:ENST00000687234.1:ENST00000598536.5:ENST00000595171.5:ENST00000596440.5:ENST00000602232.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	89	2	2.7951	3.07944	3.36378	0.0016048	8.18693e-4	0.0367961	0.0264086
chr12	132801666	132801766	5449938	0	-	0.47	(0.44,0.476]	chr12	522065	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	GOLGA3	ENSG00000090615.16	ENST00000204726.9:ENST00000450791.8:ENST00000693666.1:ENST00000688114.1:ENST00000687190.1:ENST00000690511.1:ENST00000685283.1:ENST00000691696.1:ENST00000691636.1:ENST00000690897.1:ENST00000690465.1:ENST00000456883.7:ENST00000692253.1:ENST00000687502.1:ENST00000688772.1:ENST00000687479.1:ENST00000690709.1:ENST00000545875.4:ENST00000688251.1:ENST00000690573.1:ENST00000685195.1:ENST00000686425.1:ENST00000693437.1:ENST00000692831.1:ENST00000688068.1:ENST00000692951.1:ENST00000689441.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	114	2	2.74546	3.079425	3.41339	0.00326603	1.64782e-5	0.0508595	0.00306044
chr12	116250690	116250790	5425281	0	-	0.52	(0.515,0.57]	chr12	518291	126	INTRON	INTRON	MED13L	ENSG00000123066.9	ENST00000281928.9:ENST00000650226.1:ENST00000548743.2:ENST00000551197.2:ENST00000650375.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	139	2	2.43133	3.07939	3.72745	2.23515e-4	1.71682e-5	0.0131533	0.00332131
chr1	162522849	162522948	238249	0	+	0.292929	(0.28,0.32]	chr1	28688	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	UHMK1	ENSG00000152332.16	ENST00000545294.5:ENST00000538489.5:ENST00000489294.2:ENST00000282169.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	131	2	2.12972	3.0793749999999998	4.02903	0.00413957	2.19226e-4	0.0588921	0.0135522
chr1	27446719	27446819	406330	0	-	0.47	(0.44,0.476]	chr1	48986	174	INTRON	INTRON	WASF2	ENSG00000158195.11	ENST00000618852.5:ENST00000536657.1	protein_coding	protein_coding	protein_coding	protein_coding	5	109	2	3.04073	3.07937	3.11801	6.56773e-4	1.55969e-4	0.0233791	0.0106835
chr4	126586601	126586701	2236575	0	-	0.27	[0,0.28]	chr4	219023	1211	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	3	100	2	2.17149	3.0793299999999997	3.98717	0.0308079	1.83224e-4	0.13151	0.0117706
chr12	116177335	116177433	5424543	0	-	0.357143	(0.35,0.378]	chr12	518267	21	INTRON	INTRON	MED13L:ENSG00000258337	ENSG00000123066.9:ENSG00000258337.1	ENST00000281928.9:ENST00000650226.1:ENST00000548743.2:ENST00000647567.1:ENST00000551197.2:ENST00000549373.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	3	43	2	2.07049	3.079325	4.08816	0.046021	0.0140397	0.149888	0.102801
chr9	129506443	129506542	4209987	0	+	0.454545	(0.44,0.476]	chr9	385779	29	EXON_LNCRNA	EXON_LNCRNA:SS3_PROX:INTRON	LINC00963	ENSG00000204054.14	ENST00000652803.1:ENST00000656664.1:ENST00000666282.1:ENST00000663727.1:ENST00000666041.1:ENST00000656234.1:ENST00000658175.1:ENST00000654204.1:ENST00000659535.1:ENST00000653700.1:ENST00000667047.1:ENST00000665998.1:ENST00000664811.1:ENST00000665880.1:ENST00000671555.1:ENST00000419300.3:ENST00000423918.5:ENST00000666559.1:ENST00000668919.1:ENST00000653386.1:ENST00000657389.1:ENST00000668206.1:ENST00000654286.1:ENST00000658999.1:ENST00000625171.4:ENST00000624390.1:ENST00000622972.3:ENST00000624009.3:ENST00000669210.1:ENST00000412141.2:ENST00000622680.2:ENST00000622120.2:ENST00000623185.4:ENST00000669939.1:ENST00000427778.1:ENST00000667499.1:ENST00000660643.1:ENST00000663083.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	4	84	2	2.56423	3.0792	3.59417	0.00226303	5.78231e-4	0.0425438	0.0218253
chr2	241682915	241683015	1349400	0	-	0.48	(0.476,0.515]	chr2	141809	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	DTYMK	ENSG00000168393.13	ENST00000400770.6:ENST00000305784.7:ENST00000445261.5:ENST00000432348.5:ENST00000420144.1:ENST00000493095.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	168	2	2.61987	3.0790300000000004	3.53819	2.71328e-4	1.36677e-5	0.014624	0.00292824
chr7	75384886	75384982	3337919	0	+	0.520833	(0.515,0.57]	chr7	310755	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	STAG3L1	ENSG00000205583.14	ENST00000619870.4:ENST00000404291.3:ENST00000487154.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	7	119	2	2.4519	3.0789400000000002	3.70598	5.82494e-4	1.95822e-5	0.0219289	0.00358497
chr14	23066584	23066660	5842682	0	-	0.539474	(0.515,0.57]	chr14	555597	2	INTRON	INTRON	ACIN1	ENSG00000100813.15	ENST00000605057.6:ENST00000557515.5:ENST00000262710.5:ENST00000457657.5:ENST00000357481.6:ENST00000338631.10:ENST00000473758.5:ENST00000397341.7:ENST00000555053.5:ENST00000555566.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	119	2	2.41643	3.078935	3.74144	8.60377e-4	1.04004e-5	0.0267605	0.00235262
chr20	63215176	63215276	7362772	0	-	0.61	(0.57,1]	chr20	751237	2	SS5_PROX	SS5_PROX:INTRON	YTHDF1	ENSG00000149658.18	ENST00000370339.8:ENST00000370334.4	protein_coding	protein_coding	protein_coding	protein_coding	5	52	2	2.73461	3.07892	3.42323	8.58388e-4	2.02023e-4	0.0267428	0.0124395
chr7	128000465	128000564	3405910	0	+	0.525253	(0.515,0.57]	chr7	318188	25	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000486037.1:ENST00000484767.5:ENST00000470723.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	78	2	2.92045	3.0789	3.23735	0.00128922	2.1866e-4	0.0328334	0.0129728
chr16	89420074	89420161	6542894	0	-	0.413793	(0.408,0.44]	chr16	634268	1	EXON_LNCRNA	EXON_LNCRNA:INTRON	ANKRD11:ENSG00000261692	ENSG00000167522.17:ENSG00000261692.1	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1:ENST00000567166.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA:processed_transcript	5	48	2	1.40381	3.078895	4.75398	0.0521927	0.00703931	0.177259	0.0718189
chr3	152455677	152455766	1536869	0	+	0.325843	(0.32,0.35]	chr3	160048	1	SS5_PROX	SS5_PROX:INTRON	MBNL1	ENSG00000152601.18	ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000324210.10:ENST00000493459.5:ENST00000545754.5:ENST00000357472.7:ENST00000324196.9:ENST00000498502.5:ENST00000463374.5:ENST00000485910.5:ENST00000465907.6:ENST00000492948.5:ENST00000485509.5:ENST00000464596.5:ENST00000478535.1	protein_coding	protein_coding	protein_coding	protein_coding	2	34	2	1.88468	3.0788399999999996	4.273	0.0515071	0.0368357	0.176696	0.138959
chr1	46675925	46676022	443999	0	-	0.412371	(0.408,0.44]	chr1	53852	14	UTR3	UTR3:EXON_MRNA	EFCAB14	ENSG00000159658.15	ENST00000674268.1:ENST00000371933.8:ENST00000672422.2:ENST00000674435.1:ENST00000479745.6:ENST00000481623.2:ENST00000674495.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	51	2	2.95296	3.078665	3.20437	0.00929354	0.00306596	0.0817766	0.0509893
chr3	185491439	185491536	1883946	0	-	0.42268	(0.408,0.44]	chr3	188397	20	UTR3	UTR3:EXON_MRNA:INTRON	TMEM41A	ENSG00000163900.11	ENST00000382227.7:ENST00000475480.5:ENST00000421852.6:ENST00000296254.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	51	2	2.95296	3.078665	3.20437	0.00929354	0.00306596	0.0817766	0.0509893
chr11	68319294	68319394	4816002	0	+	0.54	(0.515,0.57]	chr11	448753	61	INTRON	INTRON	LRP5	ENSG00000162337.12	ENST00000294304.12:ENST00000529993.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	44	2	3.03037	3.0785	3.12663	0.00608732	0.00374498	0.0676501	0.0562234
chr14	74001441	74001541	5921495	0	-	0.52	(0.515,0.57]	chr14	562471	43	INTRON	INTRON	ENTPD5	ENSG00000187097.13	ENST00000557325.5:ENST00000334696.11:ENST00000556242.5:ENST00000554664.5:ENST00000556108.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	44	2	3.03037	3.0785	3.12663	0.00608732	0.00374498	0.0676501	0.0562234
chr10	59892241	59892341	4623737	0	-	0.36	(0.35,0.378]	chr10	425682	392	INTRON	INTRON	CCDC6	ENSG00000108091.11	ENST00000263102.7	protein_coding	protein_coding	protein_coding	protein_coding	2	36	2	1.75561	3.078445	4.40128	0.0739399	0.0120289	0.190914	0.0962115
chr3	11440613	11440713	1366098	0	+	0.36	(0.35,0.378]	chr3	143944	133	INTRON	INTRON	ATG7	ENSG00000197548.13	ENST00000693202.1:ENST00000435760.6:ENST00000685771.1:ENST00000354449.7:ENST00000354956.9:ENST00000446450.6:ENST00000414717.5:ENST00000427759.5:ENST00000446110.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	36	2	1.75561	3.078445	4.40128	0.0739399	0.0120289	0.190914	0.0962115
chr1	21170619	21170719	393569	0	-	0.42	(0.408,0.44]	chr1	46848	5	INTRON	INTRON	EIF4G3	ENSG00000075151.24	ENST00000374935.7:ENST00000602326.6:ENST00000685872.1:ENST00000686579.1:ENST00000688741.1:ENST00000400422.6:ENST00000634879.2:ENST00000693470.1:ENST00000685814.1:ENST00000356916.7:ENST00000438975.5:ENST00000411888.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	69	2	2.64944	3.078375	3.50731	0.00481947	8.5918e-4	0.060277	0.0265787
chr3	37252382	37252482	1395845	0	+	0.35	(0.32,0.35]	chr3	146319	5	INTRON	INTRON	GOLGA4	ENSG00000144674.17	ENST00000435830.6:ENST00000444882.5:ENST00000356847.8:ENST00000450863.6:ENST00000361924.7:ENST00000429018.5:ENST00000431105.1:ENST00000419177.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	225	2	2.87602	3.078365	3.28071	7.58835e-4	3.0456e-6	0.025219	0.00112196
chr6	70554753	70554853	2895438	0	+	0.47	(0.44,0.476]	chr6	274051	160	INTRON	INTRON	FAM135A	ENSG00000082269.17	ENST00000505769.5:ENST00000418814.7:ENST00000457062.6:ENST00000361499.7:ENST00000370479.7:ENST00000194672.11:ENST00000505868.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	68	2	2.981	3.07836	3.17572	0.00427037	9.31193e-4	0.0573912	0.0278746
chr21	44048391	44048490	7415395	0	+	0.393939	(0.378,0.408]	chr21	755795	101	INTRON	INTRON	TRAPPC10	ENSG00000160218.13	ENST00000291574.9:ENST00000380221.7:ENST00000422875.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	71	2	3.05389	3.078315	3.10274	0.00586642	6.75567e-4	0.0668095	0.0236067
chr6	47528607	47528706	2874074	0	+	0.343434	(0.32,0.35]	chr6	272731	248	INTRON	INTRON	CD2AP	ENSG00000198087.7	ENST00000359314.5	protein_coding	protein_coding	protein_coding	protein_coding	3	41	2	1.61669	3.078285	4.53988	0.0578816	0.0202178	0.188651	0.109913
chr7	101848555	101848655	3366674	0	+	0.51	(0.476,0.515]	chr7	315215	292	INTRON	INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000497815.5:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000607092.1:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000558469.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	33	2	1.72558	3.078255	4.43093	0.0767648	0.00931369	0.196164	0.0855292
chr6	31742179	31742277	2843499	0	+	0.306122	(0.28,0.32]	chr6	267766	5	INTRON	INTRON	MSH5:MSH5-SAPCD1	ENSG00000204410.16:ENSG00000255152.8	ENST00000652715.1:ENST00000375755.8:ENST00000425703.5:ENST00000375750.9:ENST00000482280.1:ENST00000463094.5:ENST00000650702.1:ENST00000493662.6:ENST00000375703.7:ENST00000375740.7:ENST00000423982.6:ENST00000463144.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	118	2	2.52374	3.07825	3.63276	0.00122848	0.00114475	0.0325799	0.0308149
chr18	21598664	21598761	6955096	0	-	0.391753	(0.378,0.408]	chr18	688038	13	INTRON	INTRON	ESCO1	ENSG00000141446.11	ENST00000269214.10:ENST00000383276.1:ENST00000580101.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	134	2	2.09688	3.0781099999999997	4.05934	0.00805155	1.88697e-6	0.0766625	8.35956e-4
chr14	73098583	73098682	5784489	0	+	0.434343	(0.408,0.44]	chr14	547862	11	INTRON	INTRON	RBM25	ENSG00000119707.14	ENST00000527432.5:ENST00000261973.12:ENST00000532683.5:ENST00000525321.5:ENST00000526754.5:ENST00000528081.5:ENST00000532192.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	40	2	2.03431	3.0780900000000004	4.12187	0.0354689	0.0154896	0.137535	0.108998
chr13	113528381	113528480	5549547	0	+	0.444444	(0.44,0.476]	chr13	530312	73	INTRON	INTRON	TMCO3	ENSG00000150403.18	ENST00000434316.7:ENST00000375391.5:ENST00000474393.5:ENST00000465556.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	32	2	2.14573	3.078055	4.01038	0.0433743	0.0238593	0.148082	0.129075
chr17	62531791	62531890	6653416	0	+	0.464646	(0.44,0.476]	chr17	649344	71	INTRON	INTRON	TLK2	ENSG00000146872.19	ENST00000582809.5:ENST00000684213.1:ENST00000583843.5:ENST00000582195.6:ENST00000682085.1:ENST00000580705.5:ENST00000346027.10:ENST00000326270.13:ENST00000682203.1:ENST00000343388.11:ENST00000683536.1:ENST00000684440.1:ENST00000684772.1:ENST00000682274.1:ENST00000682827.1:ENST00000682075.1:ENST00000683104.1:ENST00000684012.1:ENST00000581041.5:ENST00000684553.1:ENST00000683737.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	32	2	2.14573	3.078055	4.01038	0.0433743	0.0238593	0.148082	0.129075
chr21	39241253	39241352	7464799	0	-	0.464646	(0.44,0.476]	chr21	760470	23	INTRON	INTRON	BRWD1	ENSG00000185658.14	ENST00000333229.6:ENST00000342449.8:ENST00000446924.5:ENST00000380800.7:ENST00000430093.5:ENST00000445245.5:ENST00000445668.5:ENST00000412604.1:ENST00000455867.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	32	2	2.14573	3.078055	4.01038	0.0433743	0.0238593	0.148082	0.129075
chr6	111263829	111263887	2939820	0	+	0.448276	(0.44,0.476]	chr6	276909	1	CDS	CDS:EXON_MRNA:INTRON	MFSD4B	ENSG00000173214.7	ENST00000672303.1:ENST00000671876.2:ENST00000672750.1:ENST00000672191.1:ENST00000368847.5:ENST00000672554.1:ENST00000673024.1:ENST00000671883.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	32	2	2.14573	3.078055	4.01038	0.0433743	0.0238593	0.148082	0.129075
chr12	46367740	46367840	5316651	0	-	0.44	(0.408,0.44]	chr12	505809	4	SS3_PROX	SS3_PROX:INTRON	SLC38A2	ENSG00000134294.14	ENST00000256689.10:ENST00000549258.5:ENST00000612232.1:ENST00000547252.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	110	2	2.64759	3.07789	3.50819	0.0016061	5.7683e-5	0.0364977	0.00620725
chr18	747226	747322	6940049	0	-	0.489583	(0.476,0.515]	chr18	686491	8	INTRON	INTRON	YES1	ENSG00000176105.14	ENST00000584307.5:ENST00000314574.5:ENST00000577961.5	protein_coding	protein_coding	protein_coding	protein_coding	7	150	2	2.57415	3.07782	3.58149	9.37618e-4	5.60094e-6	0.0280776	0.00164301
chr3	185917418	185917516	1886383	0	-	0.265306	[0,0.28]	chr3	188595	30	UTR3	UTR3:EXON_MRNA	TRA2B	ENSG00000136527.19	ENST00000453386.7:ENST00000492417.5:ENST00000463328.5:ENST00000259043.11:ENST00000414862.5:ENST00000487615.5:ENST00000466832.5:ENST00000456380.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	297	2	2.33875	3.07782	3.81689	9.27196e-4	1.74841e-5	0.0278545	0.00336168
chrX	123620718	123620804	7877894	0	-	0.244186	[0,0.28]	chrX	802425	5	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	THOC2	ENSG00000125676.20	ENST00000448128.5:ENST00000245838.13:ENST00000441692.5:ENST00000618150.4:ENST00000432353.5:ENST00000355725.8:ENST00000416618.5:ENST00000491737.5:ENST00000464604.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	97	2	2.8193	3.077755	3.33621	0.00427056	0.00285248	0.0573912	0.0494641
chr22	28800036	28800133	7573588	0	-	0.587629	(0.57,1]	chr22	774465	1	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	XBP1	ENSG00000100219.17	ENST00000216037.10:ENST00000403532.7:ENST00000405219.7:ENST00000344347.5:ENST00000482720.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	44	2	2.52633	3.0777150000000004	3.6291	0.0018535	3.02868e-4	0.039946	0.0160895
chr1	235262651	235262751	663207	0	-	0.52	(0.515,0.57]	chr1	78552	15	INTRON	INTRON	ARID4B	ENSG00000054267.22	ENST00000349213.7:ENST00000366603.6:ENST00000264183.9:ENST00000421364.5:ENST00000491632.5:ENST00000418304.1:ENST00000466653.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	47	2	2.43589	3.077655	3.71942	0.0370871	2.61221e-4	0.139194	0.014326
chr7	23403944	23404040	3502997	0	-	0.364583	(0.35,0.378]	chr7	326886	10	INTRON	INTRON	IGF2BP3	ENSG00000136231.14	ENST00000258729.8:ENST00000421467.6:ENST00000468263.5:ENST00000479504.5:ENST00000466809.6:ENST00000491719.5:ENST00000465058.5:ENST00000469723.5:ENST00000476938.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	113	2	2.0653	3.0776399999999997	4.08998	0.00473276	1.0444e-4	0.0633849	0.00919241
chr6	34677853	34677953	3086031	0	-	0.52	(0.515,0.57]	chr6	288696	60	INTRON	INTRON	ILRUN	ENSG00000196821.10	ENST00000374026.7:ENST00000374023.8	protein_coding	protein_coding	protein_coding	protein_coding	3	65	2	2.68833	3.077455	3.46658	0.0184931	5.8755e-5	0.108861	0.00629276
chr4	1719328	1719428	2095276	0	-	0.54	(0.515,0.57]	chr4	207254	1	SS3_PROX	SS3_PROX:INTRON	TMEM129	ENSG00000168936.11	ENST00000303277.6:ENST00000382936.8:ENST00000536901.1:ENST00000480360.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	41	2	2.11384	3.07735	4.04086	0.0197045	0.0118599	0.120063	0.0899583
chr12	111466098	111466196	5411869	0	-	0.428571	(0.408,0.44]	chr12	516821	10	INTRON	INTRON	ATXN2	ENSG00000204842.18	ENST00000642389.2:ENST00000608853.5:ENST00000672613.1:ENST00000673436.1:ENST00000643669.2:ENST00000389154.7:ENST00000616825.4:ENST00000389153.10:ENST00000550104.5:ENST00000483311.6:ENST00000672335.1:ENST00000647445.1:ENST00000482777.5:ENST00000492467.6:ENST00000673557.1:ENST00000673283.1:ENST00000673273.1:ENST00000673449.1:ENST00000535949.5:ENST00000542287.6:ENST00000550844.2:ENST00000643474.1:ENST00000643694.1:ENST00000550889.5:ENST00000645162.1:ENST00000551755.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	68	2	2.86612	3.0773200000000003	3.28852	0.00287185	0.00157924	0.0474836	0.0366789
chr1	112920605	112920703	523782	0	-	0.22449	[0,0.28]	chr1	61671	22	INTRON	INTRON	SLC16A1	ENSG00000155380.13	ENST00000679803.1:ENST00000369626.8:ENST00000443580.6:ENST00000538576.5:ENST00000429288.2:ENST00000458229.6:ENST00000679846.1:ENST00000481750.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	40	2	1.95356	3.0773099999999998	4.20106	0.0695895	0.0463152	0.184298	0.166231
chr7	32879334	32879434	3515498	0	-	0.2	[0,0.28]	chr7	327776	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	KBTBD2	ENSG00000170852.12	ENST00000304056.9:ENST00000485611.5:ENST00000477129.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	40	2	1.95356	3.0773099999999998	4.20106	0.0695895	0.0463152	0.184298	0.166231
chr2	238202205	238202304	1344235	0	-	0.363636	(0.35,0.378]	chr2	140935	70	INTRON	INTRON	ILKAP	ENSG00000132323.9	ENST00000254654.8:ENST00000463129.5:ENST00000612675.4:ENST00000622223.4:ENST00000457149.1:ENST00000498727.5:ENST00000467133.5:ENST00000490837.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	55	2	2.83709	3.077225	3.31736	0.01435	0.00211072	0.0966737	0.0425419
chr3	50100165	50100256	1424603	0	+	0.340659	(0.32,0.35]	chr3	150130	2	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RBM5	ENSG00000003756.17	ENST00000347869.8:ENST00000404526.6:ENST00000469838.5:ENST00000433556.6:ENST00000464087.6:ENST00000395174.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	97	2	2.91353	3.0772000000000004	3.24087	0.00420518	3.88987e-4	0.0572185	0.0177751
chr1	25336765	25336852	403257	0	-	0.402299	(0.378,0.408]	chr1	48411	1	SS5_PROX	SS5_PROX:INTRON	RSRP1	ENSG00000117616.18	ENST00000473314.6:ENST00000561867.1:ENST00000568996.1:ENST00000568399.1:ENST00000562018.1:ENST00000567741.1:ENST00000566599.1:ENST00000564413.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	39	2	1.8374	3.0771949999999997	4.31699	0.0299228	0.0250408	0.142135	0.12011
chr19	47746303	47746399	7087127	0	+	0.427083	(0.408,0.44]	chr19	709110	2	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	NOP53	ENSG00000105373.19	ENST00000246802.10:ENST00000594525.5:ENST00000600410.5:ENST00000598681.5:ENST00000599253.1:ENST00000599582.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	74	2	3.06698	3.0771800000000002	3.08738	0.00478231	8.51999e-4	0.0636201	0.0267428
chr2	61366831	61366931	1129504	0	-	0.49	(0.476,0.515]	chr2	121448	158	INTRON	INTRON	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000453133.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	229	2	3.01465	3.077125	3.1396	4.2183e-5	4.93428e-6	0.00551568	0.0015125
chr12	132823945	132824039	5450173	0	-	0.56383	(0.515,0.57]	chr12	522111	13	INTRON	INTRON	GOLGA3:CHFR	ENSG00000090615.16:ENSG00000072609.18	ENST00000204726.9:ENST00000450791.8:ENST00000688114.1:ENST00000691696.1:ENST00000691636.1:ENST00000690897.1:ENST00000456883.7:ENST00000545875.4:ENST00000688251.1:ENST00000686751.1:ENST00000685580.1:ENST00000687165.1:ENST00000692384.1:ENST00000685120.1:ENST00000689813.1:ENST00000693112.1:ENST00000685450.1:ENST00000534967.2:ENST00000537317.2:ENST00000690178.1:ENST00000652603.2:ENST00000541341.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	59	2	3.00693	3.077115	3.1473	0.00397184	7.26845e-4	0.0549214	0.0245647
chrX	13341139	13341230	7622367	0	+	0.450549	(0.44,0.476]	chrX	780349	7	INTRON	INTRON	LINC01203	ENSG00000226985.7	ENST00000669963.1:ENST00000661545.1:ENST00000659526.1:ENST00000656410.1:ENST00000661104.1:ENST00000456091.2:ENST00000655502.1:ENST00000671651.1:ENST00000656979.1:ENST00000656271.1:ENST00000661629.1:ENST00000661464.1:ENST00000419566.5:ENST00000668192.1:ENST00000665887.1:ENST00000659191.1:ENST00000667868.1:ENST00000653729.1:ENST00000656111.1	lncRNA	lncRNA	lncRNA	lncRNA	10	195	2	2.60011	3.07708	3.55405	9.90939e-5	1.32354e-5	0.00838368	0.00287735
chr7	73549587	73549686	3555243	0	-	0.353535	(0.35,0.378]	chr7	330846	56	INTRON	INTRON	BCL7B	ENSG00000106635.8	ENST00000223368.7:ENST00000411832.5:ENST00000482231.5:ENST00000454871.5:ENST00000463858.5:ENST00000448175.5:ENST00000455335.2:ENST00000464288.5:ENST00000416906.2:ENST00000493592.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	55	2	2.99044	3.077075	3.16371	0.00894806	0.00383956	0.0799922	0.0562562
chr20	32850207	32850306	7257475	0	+	0.353535	(0.35,0.378]	chr20	737285	16	UTR3	UTR3:EXON_MRNA	MAPRE1	ENSG00000101367.9	ENST00000375571.6	protein_coding	protein_coding	protein_coding	protein_coding	3	39	2	1.58862	3.07706	4.5655	0.0615516	0.0155464	0.193423	0.100909
chr20	41035543	41035643	7273573	0	+	0.37	(0.35,0.378]	chr20	739216	57	INTRON	INTRON	TOP1	ENSG00000198900.7	ENST00000361337.3:ENST00000681113.1:ENST00000681058.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	39	2	1.58862	3.07706	4.5655	0.0615516	0.0155464	0.193423	0.100909
chr2	107716902	107717002	1205718	0	-	0.23	[0,0.28]	chr2	128527	4	SS5_PROX	SS5_PROX:INTRON	LINC01885:ENSG00000286769	ENSG00000237880.2:ENSG00000286769.1	ENST00000654481.1:ENST00000669817.1	lncRNA	lncRNA	lncRNA	lncRNA	15	440	2	2.63476	3.077035	3.51931	8.56005e-5	1.5434e-5	0.00783027	0.00315572
chr7	149618903	149619003	3672565	0	-	0.52	(0.515,0.57]	chr7	340834	549	INTRON	INTRON	ZNF767P	ENSG00000133624.14	ENST00000463567.5:ENST00000472212.5:ENST00000684939.1:ENST00000690388.1:ENST00000486492.5:ENST00000481762.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	4	70	2	2.45375	3.077025	3.7003	0.00273605	3.73715e-4	0.0483437	0.0179087
chr12	24942533	24942632	5297847	0	-	0.434343	(0.408,0.44]	chr12	503884	396	INTRON	INTRON	BCAT1	ENSG00000060982.15	ENST00000261192.12:ENST00000342945.9:ENST00000539780.5:ENST00000546285.1	protein_coding	protein_coding	protein_coding	protein_coding	6	107	2	2.59309	3.07683	3.56057	9.67143e-4	3.10676e-4	0.0282401	0.0158045
chr13	32523463	32523562	5572699	0	-	0.474747	(0.44,0.476]	chr13	532565	13	EXON_MRNA	EXON_MRNA:INTRON	N4BP2L2	ENSG00000244754.9	ENST00000357505.10:ENST00000399396.7:ENST00000504114.5:ENST00000446957.6:ENST00000674456.1:ENST00000674161.1:ENST00000674422.1:ENST00000674272.1:ENST00000674452.1:ENST00000674384.1:ENST00000505213.5:ENST00000674219.1:ENST00000267068.5:ENST00000674349.1:ENST00000674428.1:ENST00000503814.2:ENST00000674465.1:ENST00000674421.1:ENST00000674180.1:ENST00000674297.1:ENST00000674293.1:ENST00000674480.1:ENST00000674377.1:ENST00000674437.1:ENST00000674327.1:ENST00000674399.1:ENST00000674196.1:ENST00000674163.1:ENST00000511143.5:ENST00000674484.1:ENST00000475731.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	12	220	2	2.53086	3.076735	3.62261	6.97899e-5	8.71795e-6	0.00692586	0.00227467
chr11	63750423	63750514	4800609	0	+	0.417582	(0.408,0.44]	chr11	444963	1	SS5_PROX	SS5_PROX:INTRON	RTN3	ENSG00000133318.14	ENST00000341307.6:ENST00000356000.7:ENST00000542238.5:ENST00000339997.8:ENST00000540798.5:ENST00000537981.5:ENST00000377819.10:ENST00000536011.5:ENST00000354497.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	51	2	2.84077	3.07667	3.31257	0.0132196	0.00198621	0.0940535	0.0411469
chr1	25904738	25904838	404612	0	-	0.32	(0.28,0.32]	chr1	48561	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	STMN1	ENSG00000117632.23	ENST00000426559.6:ENST00000455785.7:ENST00000399728.5:ENST00000465604.1:ENST00000357865.6:ENST00000374291.5:ENST00000446334.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	42	2	1.91611	3.07665	4.23719	0.0539102	0.0264147	0.164153	0.133676
chr19	10109330	10109430	7012215	0	+	0.52	(0.515,0.57]	chr19	696444	3	SS3_PROX	SS3_PROX:INTRON	PPAN	ENSG00000130810.20	ENST00000253107.12:ENST00000393793.5:ENST00000446223.5:ENST00000466025.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	47	2	2.65834	3.07665	3.49496	0.0187418	9.61701e-4	0.117523	0.0282401
chr10	124409365	124409465	4710742	0	-	0.56	(0.515,0.57]	chr10	434727	4	SS3_PROX	SS3_PROX:INTRON	OAT	ENSG00000065154.12	ENST00000539214.5:ENST00000368845.6:ENST00000476917.5:ENST00000490096.5:ENST00000492376.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	28	2	1.94945	3.0766299999999998	4.20381	0.0414068	0.0189208	0.161557	0.108861
chr19	47223366	47223466	7196146	0	-	0.55	(0.515,0.57]	chr19	729158	9	INTRON	INTRON	BBC3	ENSG00000105327.18	ENST00000449228.5:ENST00000300880.11:ENST00000341983.8:ENST00000439096.3:ENST00000598636.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	28	2	1.94945	3.0766299999999998	4.20381	0.0414068	0.0189208	0.161557	0.108861
chr16	85507786	85507886	6414908	0	+	0.39	(0.378,0.408]	chr16	615465	1485	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	3	43	2	1.63458	3.0765599999999997	4.51854	0.0573057	0.00748824	0.167723	0.0772645
chr9	131409332	131409431	4217122	0	+	0.525253	(0.515,0.57]	chr9	386720	147	INTRON	INTRON	PRRC2B	ENSG00000288701.1	ENST00000682525.1:ENST00000684596.1:ENST00000683519.1:ENST00000682501.1	protein_coding	protein_coding	protein_coding	protein_coding	5	86	2	2.62224	3.0765450000000003	3.53085	6.59951e-4	5.82626e-4	0.0232396	0.0223753
chr21	6989626	6989725	7425916	0	-	0.414141	(0.408,0.44]	chr21	757520	26	INTRON	INTRON	ENSG00000280018	ENSG00000280018.4	ENST00000623165.3	lncRNA	lncRNA	lncRNA	lncRNA	2	51	2	3.00595	3.076505	3.14706	0.00781452	0.00382411	0.0759016	0.0562562
chr3	170359799	170359887	1558180	0	+	0.420455	(0.408,0.44]	chr3	161430	3	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SKIL	ENSG00000136603.14	ENST00000477216.1:ENST00000465590.1:ENST00000259119.9:ENST00000476188.5:ENST00000426052.6:ENST00000490989.1:ENST00000458537.7:ENST00000413427.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	51	2	3.00595	3.076505	3.14706	0.00781452	0.00382411	0.0759016	0.0562562
chrY	11209847	11209947	7930111	0	-	0.43	(0.408,0.44]	chrY	807176	464	INTRON	INTRON	ENSG00000278212	ENSG00000278212.3	ENST00000652671.1:ENST00000651211.2:ENST00000687423.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	2	51	2	3.00595	3.076505	3.14706	0.00781452	0.00382411	0.0759016	0.0562562
chr15	67177366	67177465	6052978	0	+	0.414141	(0.408,0.44]	chr15	576318	24	INTRON	INTRON	SMAD3	ENSG00000166949.17	ENST00000327367.9:ENST00000679624.1:ENST00000540846.6:ENST00000558894.5:ENST00000439724.7:ENST00000681239.1:ENST00000537194.6:ENST00000558827.1:ENST00000558428.5:ENST00000560402.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	139	2	2.67594	3.0764250000000004	3.47691	1.93157e-4	1.1563e-4	0.012131	0.00969484
chr12	132735217	132735311	5449301	0	-	0.478723	(0.476,0.515]	chr12	521911	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	ANKLE2	ENSG00000176915.15	ENST00000357997.10:ENST00000539605.5:ENST00000542374.5:ENST00000505031.6:ENST00000439231.6:ENST00000538591.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	35	2	2.05154	3.0763350000000003	4.10113	0.0336015	0.0226984	0.134145	0.124921
chr1	203808810	203808910	296812	0	+	0.36	(0.35,0.378]	chr1	34134	54	INTRON	INTRON	ZC3H11A:ZBED6	ENSG00000058673.17:ENSG00000257315.3	ENST00000367210.3:ENST00000453771.5:ENST00000432282.5:ENST00000638800.1:ENST00000367214.5:ENST00000639812.1:ENST00000367212.7:ENST00000332127.8:ENST00000550078.2:ENST00000495527.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	101	2	2.44961	3.076285	3.70296	0.0014359	6.20319e-4	0.0347139	0.0229151
chr1	246016059	246016159	675791	0	-	0.48	(0.476,0.515]	chr1	79713	276	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000391836.3:ENST00000464398.1:ENST00000453676.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	25	2	2.3223	3.07624	3.83018	0.0519312	0.0423385	0.161744	0.159306
chr11	585962	586061	4719668	0	+	0.515152	(0.476,0.515]	chr11	436170	35	INTRON	INTRON	PHRF1	ENSG00000070047.13	ENST00000264555.10:ENST00000416188.3:ENST00000534320.5:ENST00000413872.6:ENST00000533464.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	25	2	2.3223	3.07624	3.83018	0.0519312	0.0423385	0.161744	0.159306
chr12	108704273	108704373	5406513	0	-	0.51	(0.476,0.515]	chr12	516035	13	INTRON	INTRON	CORO1C	ENSG00000110880.11	ENST00000261401.8:ENST00000541050.5:ENST00000549384.5:ENST00000550542.5:ENST00000552871.5:ENST00000551550.5:ENST00000546571.5:ENST00000551044.1:ENST00000551059.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	25	2	2.3223	3.07624	3.83018	0.0519312	0.0423385	0.161744	0.159306
chr17	2223831	2223931	6703913	0	-	0.48	(0.476,0.515]	chr17	656301	96	INTRON	INTRON	SMG6	ENSG00000070366.14	ENST00000263073.11:ENST00000354901.8:ENST00000536871.6:ENST00000572205.5:ENST00000571442.5:ENST00000570659.5:ENST00000575663.5:ENST00000570606.5:ENST00000570668.1	protein_coding	protein_coding	protein_coding	protein_coding	1	25	2	2.3223	3.07624	3.83018	0.0519312	0.0423385	0.161744	0.159306
chr18	46043139	46043239	6965006	0	-	0.49	(0.476,0.515]	chr18	689358	27	INTRON	INTRON	PSTPIP2	ENSG00000152229.18	ENST00000409746.5:ENST00000589328.5:ENST00000587042.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	25	2	2.3223	3.07624	3.83018	0.0519312	0.0423385	0.161744	0.159306
chr5	93950581	93950681	2678336	0	-	0.5	(0.476,0.515]	chr5	253172	393	INTRON	INTRON	FAM172A	ENSG00000113391.19	ENST00000395965.8:ENST00000505869.5:ENST00000509739.5:ENST00000509163.5:ENST00000502503.1:ENST00000506398.6:ENST00000504768.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	25	2	2.3223	3.07624	3.83018	0.0519312	0.0423385	0.161744	0.159306
chr5	178217887	178217986	2778605	0	-	0.515152	(0.476,0.515]	chr5	262050	5	INTRON	INTRON	PHYKPL	ENSG00000175309.15	ENST00000308158.10:ENST00000481436.5:ENST00000489262.5:ENST00000481811.5:ENST00000474052.5:ENST00000393488.2:ENST00000493197.5:ENST00000494126.6:ENST00000510991.5:ENST00000476487.5:ENST00000506045.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	25	2	2.3223	3.07624	3.83018	0.0519312	0.0423385	0.161744	0.159306
chr6	104999232	104999332	2930273	0	+	0.48	(0.476,0.515]	chr6	276110	406	INTRON	INTRON	LIN28B	ENSG00000187772.8	ENST00000635857.1:ENST00000637759.1:ENST00000345080.5	protein_coding	protein_coding	protein_coding	protein_coding	1	25	2	2.3223	3.07624	3.83018	0.0519312	0.0423385	0.161744	0.159306
chr8	28906766	28906866	3725019	0	+	0.51	(0.476,0.515]	chr8	346251	146	INTRON	INTRON	HMBOX1	ENSG00000147421.18	ENST00000287701.15:ENST00000558662.5:ENST00000519662.5:ENST00000397358.7:ENST00000560599.5:ENST00000523613.5:ENST00000560357.5:ENST00000521516.5:ENST00000519047.5:ENST00000560269.1:ENST00000355231.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	25	2	2.3223	3.07624	3.83018	0.0519312	0.0423385	0.161744	0.159306
chr8	98822914	98823014	4000135	0	-	0.5	(0.476,0.515]	chr8	366112	477	INTRON	INTRON	STK3	ENSG00000104375.17	ENST00000617590.1:ENST00000419617.7:ENST00000523601.5:ENST00000518165.5:ENST00000521649.5:ENST00000424861.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	25	2	2.3223	3.07624	3.83018	0.0519312	0.0423385	0.161744	0.159306
chr9	105739887	105739987	4182998	0	+	0.49	(0.476,0.515]	chr9	381513	169	INTRON	INTRON	TMEM38B	ENSG00000095209.12	ENST00000374692.8:ENST00000374688.5:ENST00000435034.5:ENST00000451560.1	protein_coding	protein_coding	protein_coding	protein_coding	1	25	2	2.3223	3.07624	3.83018	0.0519312	0.0423385	0.161744	0.159306
chr9	136061957	136062056	4373134	0	-	0.50505	(0.476,0.515]	chr9	402592	110	INTRON	INTRON	NACC2	ENSG00000148411.8	ENST00000277554.4	protein_coding	protein_coding	protein_coding	protein_coding	1	25	2	2.3223	3.07624	3.83018	0.0519312	0.0423385	0.161744	0.159306
chr14	30906676	30906776	5856658	0	-	0.27	[0,0.28]	chr14	556425	4	SS5_PROX	SS5_PROX:INTRON	STRN3	ENSG00000196792.12	ENST00000355683.9:ENST00000357479.10:ENST00000555358.5:ENST00000554124.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	72	2	2.77716	3.07623	3.3753	0.022039	0.00242466	0.115395	0.0454587
chr16	21849016	21849114	6461718	0	-	0.244898	[0,0.28]	chr16	623425	11	INTRON	INTRON	NPIPB4	ENSG00000185864.18	ENST00000415645.6:ENST00000682606.1:ENST00000542133.5:ENST00000614197.4:ENST00000539318.5:ENST00000341400.11:ENST00000518761.8:ENST00000543654.1:ENST00000520808.6:ENST00000542338.1:ENST00000539191.1:ENST00000536041.5:ENST00000529969.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	72	2	3.01287	3.076065	3.13926	0.0115634	0.00563224	0.0889104	0.0678837
chr20	21346550	21346650	7248588	0	+	0.23	[0,0.28]	chr20	735955	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	XRN2	ENSG00000088930.8	ENST00000377191.5	protein_coding	protein_coding	protein_coding	protein_coding	2	72	2	3.01287	3.076065	3.13926	0.0115634	0.00563224	0.0889104	0.0678837
chr1	244430954	244431053	672631	0	-	0.474747	(0.44,0.476]	chr1	79562	62	INTRON	INTRON	ADSS2	ENSG00000035687.10	ENST00000366535.4	protein_coding	protein_coding	protein_coding	protein_coding	11	183	2	2.26701	3.076005	3.885	3.58264e-4	1.12992e-5	0.0169207	0.00266636
chr6	57138727	57138826	2878555	0	+	0.272727	[0,0.28]	chr6	273283	35	INTRON	INTRON	ZNF451	ENSG00000112200.17	ENST00000357489.7:ENST00000444273.6:ENST00000370706.9:ENST00000491832.6:ENST00000502749.1:ENST00000504603.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	97	2	2.75887	3.07594	3.39301	0.00360252	0.00353745	0.0552588	0.0528929
chr1	149858092	149858191	549541	0	-	0.313131	(0.28,0.32]	chr1	64516	35	INTRON	INTRON	H4C15	ENSG00000270276.3	ENST00000621520.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	2	65	2	2.91832	3.0759350000000003	3.23355	0.0102484	0.004869	0.089002	0.0607461
chr1	1315971	1316056	359473	0	-	0.470588	(0.44,0.476]	chr1	41628	4	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	INTS11	ENSG00000127054.22	ENST00000540437.5:ENST00000545578.5:ENST00000620829.4:ENST00000435064.6:ENST00000323275.10:ENST00000411962.5:ENST00000462432.5:ENST00000419704.5:ENST00000458452.7:ENST00000421495.6:ENST00000532772.5:ENST00000450926.6:ENST00000527098.5:ENST00000528879.5:ENST00000531377.5:ENST00000434694.6:ENST00000488042.6:ENST00000526797.5:ENST00000526332.5:ENST00000430786.5:ENST00000527719.5:ENST00000530031.5:ENST00000526113.1:ENST00000526904.5:ENST00000525603.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	37	2	1.62896	3.0758300000000003	4.5227	0.0546679	0.0128818	0.182674	0.0926667
chr20	63886978	63887075	7300908	0	+	0.463918	(0.44,0.476]	chr20	743121	2	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	TPD52L2	ENSG00000101150.18	ENST00000611972.4:ENST00000615907.4:ENST00000369927.8:ENST00000346249.9:ENST00000348257.9:ENST00000352482.8:ENST00000351424.8:ENST00000217121.9:ENST00000358548.4:ENST00000474176.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	37	2	1.62896	3.0758300000000003	4.5227	0.0546679	0.0128818	0.182674	0.0926667
chr16	68141881	68141981	6370793	0	+	0.35	(0.32,0.35]	chr16	612207	32	INTRON	INTRON	NFATC3	ENSG00000072736.19	ENST00000563319.5:ENST00000569766.5:ENST00000553077.5:ENST00000566301.5:ENST00000549350.5:ENST00000566893.5:ENST00000575270.5:ENST00000561714.5:ENST00000346183.8:ENST00000568466.6:ENST00000539828.6:ENST00000562171.1:ENST00000349223.9:ENST00000329524.8:ENST00000379165.8:ENST00000562926.5:ENST00000570212.5:ENST00000563796.5:ENST00000567152.5:ENST00000563288.5:ENST00000535127.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	29	2	2.37794	3.07569	3.77344	0.0596635	0.0498601	0.189982	0.156383
chr20	34384947	34385046	7259324	0	+	0.333333	(0.32,0.35]	chr20	737405	151	INTRON	INTRON	ITCH	ENSG00000078747.16	ENST00000486883.5:ENST00000374864.10:ENST00000535650.7:ENST00000670516.1:ENST00000658310.1:ENST00000665484.1:ENST00000664852.1:ENST00000660337.1:ENST00000665428.1:ENST00000654846.1:ENST00000262650.10:ENST00000662871.1:ENST00000665346.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	29	2	2.37794	3.07569	3.77344	0.0596635	0.0498601	0.189982	0.156383
chr7	35651654	35651754	3517934	0	-	0.34	(0.32,0.35]	chr7	328117	128	INTRON	INTRON	HERPUD2	ENSG00000122557.11	ENST00000311350.8:ENST00000396081.5:ENST00000426180.1:ENST00000438224.5:ENST00000413517.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	29	2	2.37794	3.07569	3.77344	0.0596635	0.0498601	0.189982	0.156383
chr16	30068153	30068251	6336740	0	+	0.540816	(0.515,0.57]	chr16	607174	6	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ENSG00000285043:ALDOA	ENSG00000285043.3:ENSG00000149925.22	ENST00000395248.6:ENST00000566897.6:ENST00000338110.11:ENST00000562168.5:ENST00000569545.5:ENST00000563060.6:ENST00000564521.6:ENST00000412304.6:ENST00000563987.5:ENST00000642816.3:ENST00000643777.4:ENST00000569798.5:ENST00000395240.7:ENST00000566012.1:ENST00000566846.5:ENST00000562679.5:ENST00000564688.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	110	2	2.45106	3.07568	3.7003	3.73715e-4	1.97878e-4	0.0179087	0.0122782
chr3	150456176	150456276	1533910	0	+	0.43	(0.408,0.44]	chr3	159818	175	INTRON	INTRON	TSC22D2	ENSG00000196428.13	ENST00000361875.8:ENST00000688009.1:ENST00000480589.1:ENST00000466814.1:ENST00000485421.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	32	2	2.14732	3.0755850000000002	4.00385	0.0454568	0.0237354	0.149888	0.129075
chr14	101978042	101978139	5820358	0	+	0.515464	(0.515,0.57]	chr14	551983	19	INTRON	INTRON	DYNC1H1	ENSG00000197102.14	ENST00000360184.10:ENST00000684561.1:ENST00000680313.1:ENST00000679720.1:ENST00000680715.1:ENST00000681283.1:ENST00000681822.1:ENST00000679910.1:ENST00000681574.1:ENST00000645039.2:ENST00000645149.2:ENST00000680200.1:ENST00000680120.1:ENST00000644881.2:ENST00000681066.1:ENST00000680423.1:ENST00000681536.1:ENST00000679486.1:ENST00000681010.1:ENST00000679629.1:ENST00000681123.1:ENST00000680874.1:ENST00000680137.1:ENST00000643508.2:ENST00000680808.1:ENST00000681311.1:ENST00000681859.1:ENST00000643684.1:ENST00000643958.2:ENST00000680001.1:ENST00000681668.1:ENST00000645114.2:ENST00000681751.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	95	2	2.92045	3.075485	3.23052	0.00128922	4.03858e-5	0.0328334	0.00515782
chr10	47534080	47534180	4609284	0	-	0.49	(0.476,0.515]	chr10	424641	102	INTRON	INTRON	ENSG00000254929	ENSG00000254929.6	ENST00000605970.5:ENST00000431840.2	lncRNA	lncRNA	lncRNA	lncRNA	2	32	2	2.13304	3.075405	4.01777	0.0411361	0.024866	0.1451	0.132101
chrX	134474590	134474680	7724216	0	+	0.488889	(0.476,0.515]	chrX	790160	8	INTRON	INTRON	HPRT1	ENSG00000165704.15	ENST00000298556.8:ENST00000462974.5:ENST00000475720.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	32	2	2.13304	3.075405	4.01777	0.0411361	0.024866	0.1451	0.132101
chr3	5147746	5147846	1353830	0	+	0.41	(0.408,0.44]	chr3	142361	188	INTRON	INTRON	ARL8B	ENSG00000134108.14	ENST00000429403.5:ENST00000256496.8:ENST00000455168.5:ENST00000444332.1:ENST00000419534.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	111	2	2.92033	3.07505	3.22977	0.00162151	5.1576e-5	0.0367655	0.00585477
chr2	134944806	134944902	872503	0	+	0.333333	(0.32,0.35]	chr2	97683	18	INTRON	INTRON	CCNT2	ENSG00000082258.13	ENST00000419781.5:ENST00000446247.5:ENST00000264157.10:ENST00000452839.5:ENST00000295238.10:ENST00000417175.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	60	2	2.57263	3.0749700000000004	3.57731	0.0312297	7.67492e-4	0.13151	0.0254532
chrX	71550721	71550821	7680125	0	+	0.32	(0.28,0.32]	chrX	786405	23	INTRON	INTRON	OGT	ENSG00000147162.14	ENST00000373719.8:ENST00000488174.5:ENST00000373701.7:ENST00000455587.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	51	2	1.56118	3.074965	4.58875	0.0467152	0.0230574	0.1676	0.118056
chr10	32049550	32049650	4590761	0	-	0.34	(0.32,0.35]	chr10	423310	6	INTRON	INTRON	KIF5B	ENSG00000170759.11	ENST00000302418.5	protein_coding	protein_coding	protein_coding	protein_coding	2	38	2	1.77704	3.074865	4.37269	0.0719969	0.0154102	0.187322	0.108569
chr10	50389694	50389794	4618342	0	-	0.41	(0.408,0.44]	chr10	425422	450	INTRON	INTRON	SGMS1	ENSG00000198964.14	ENST00000429490.5:ENST00000361781.7:ENST00000619438.4:ENST00000492601.2:ENST00000609445.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	34	2	1.81572	3.0748599999999997	4.334	0.0626779	0.011982	0.175915	0.0962115
chr16	4765264	4765364	6438452	0	-	0.44	(0.408,0.44]	chr16	620070	3	SS5_PROX	SS5_PROX:INTRON	ZNF500	ENSG00000103199.14	ENST00000219478.11:ENST00000545009.1:ENST00000589422.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	34	2	1.81572	3.0748599999999997	4.334	0.0626779	0.011982	0.175915	0.0962115
chr22	47706584	47706684	7540112	0	+	0.43	(0.408,0.44]	chr22	770712	21	EXON_LNCRNA	EXON_LNCRNA:INTRON	ENSG00000224271	ENSG00000224271.7	ENST00000664761.1:ENST00000651071.1:ENST00000650683.1:ENST00000651536.1:ENST00000652499.1:ENST00000652656.1:ENST00000652072.1:ENST00000651445.1:ENST00000423737.5:ENST00000650834.1:ENST00000650660.1:ENST00000651056.1:ENST00000652611.1:ENST00000652399.1:ENST00000652123.1:ENST00000651311.1:ENST00000651458.1:ENST00000652505.1:ENST00000652702.2:ENST00000652334.1:ENST00000652030.2:ENST00000651403.1:ENST00000652228.1:ENST00000651124.1:ENST00000650972.1:ENST00000651985.1:ENST00000651637.1:ENST00000650924.1:ENST00000651003.1:ENST00000652168.1:ENST00000651948.2:ENST00000651293.1:ENST00000651939.1:ENST00000650787.1:ENST00000651517.1:ENST00000651662.1:ENST00000652690.1:ENST00000651638.1:ENST00000670853.1:ENST00000652750.1:ENST00000652080.1:ENST00000651294.1:ENST00000652164.1:ENST00000651538.1:ENST00000650775.1:ENST00000651983.1:ENST00000651033.1:ENST00000651584.1:ENST00000650884.1:ENST00000651270.1	lncRNA	lncRNA	lncRNA	lncRNA	2	34	2	1.81572	3.0748599999999997	4.334	0.0626779	0.011982	0.175915	0.0962115
chr8	144292382	144292482	3881528	0	+	0.43	(0.408,0.44]	chr8	356859	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	HSF1	ENSG00000185122.11	ENST00000400780.8:ENST00000528838.6:ENST00000528988.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	34	2	1.81572	3.0748599999999997	4.334	0.0626779	0.011982	0.175915	0.0962115
chr19	9293109	9293207	7132151	0	-	0.306122	(0.28,0.32]	chr19	718688	21	UTR3	UTR3:EXON_MRNA	ZNF699	ENSG00000196110.8	ENST00000591998.6	protein_coding	protein_coding	protein_coding	protein_coding	2	64	2	3.02632	3.07482	3.12332	0.0071944	0.00698537	0.0756118	0.0718189
chr11	59800554	59800654	4795605	0	+	0.52	(0.515,0.57]	chr11	444019	3	SS3_PROX	SS3_PROX:INTRON	STX3	ENSG00000166900.17	ENST00000641815.1:ENST00000337979.9:ENST00000533637.5:ENST00000633708.1:ENST00000529177.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	43	2	1.38719	3.074815	4.76244	0.0540435	0.00362147	0.181713	0.0533855
chr7	128625111	128625203	3408308	0	+	0.336957	(0.32,0.35]	chr7	318406	10	INTRON	INTRON	ENSG00000242588	ENSG00000242588.6	ENST00000605862.5	lncRNA	lncRNA	lncRNA	lncRNA	3	42	2	1.78201	3.0747799999999996	4.36755	0.0365003	0.0300552	0.153759	0.129138
chr1	114449217	114449317	527274	0	-	0.39	(0.378,0.408]	chr1	62137	151	INTRON	INTRON	TRIM33	ENSG00000197323.12	ENST00000358465.7:ENST00000369543.6:ENST00000448034.5	protein_coding	protein_coding	protein_coding	protein_coding	2	32	2	2.04292	3.074765	4.10661	0.0399023	0.0326035	0.145164	0.143072
chr14	45097603	45097701	5714666	0	+	0.387755	(0.378,0.408]	chr14	542481	2	INTRON	INTRON	PRPF39	ENSG00000185246.18	ENST00000355765.11:ENST00000477626.5:ENST00000424478.5:ENST00000554439.5:ENST00000554429.5:ENST00000554081.5:ENST00000557477.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	32	2	2.04292	3.074765	4.10661	0.0399023	0.0326035	0.145164	0.143072
chr2	108746310	108746410	847686	0	+	0.4	(0.378,0.408]	chr2	94822	2	SS3_PROX	SS3_PROX:INTRON	RANBP2	ENSG00000153201.16	ENST00000283195.11	protein_coding	protein_coding	protein_coding	protein_coding	2	32	2	2.04292	3.074765	4.10661	0.0399023	0.0326035	0.145164	0.143072
chr1	71080249	71080344	483022	0	-	0.494737	(0.476,0.515]	chr1	57886	12	INTRON	INTRON	ZRANB2	ENSG00000132485.14	ENST00000370920.8:ENST00000254821.10:ENST00000611683.1	protein_coding	protein_coding	protein_coding	protein_coding	2	34	2	1.92984	3.0747400000000003	4.21964	0.0466474	0.0167715	0.151522	0.110511
chr3	195697185	195697281	1593843	0	+	0.489583	(0.476,0.515]	chr3	165103	2	INTRON	INTRON	MUC20-OT1	ENSG00000242086.8	ENST00000451982.6:ENST00000628917.2:ENST00000625358.2:ENST00000602127.5:ENST00000627502.2:ENST00000597034.5:ENST00000629823.2:ENST00000630243.2:ENST00000627718.2:ENST00000631366.2:ENST00000630170.2:ENST00000626569.2:ENST00000631189.2:ENST00000599448.5:ENST00000597482.5:ENST00000598992.5:ENST00000420851.6:ENST00000626870.2:ENST00000630417.2:ENST00000627152.2:ENST00000594715.5:ENST00000431767.5:ENST00000630863.2:ENST00000629686.2:ENST00000627562.2:ENST00000628547.2:ENST00000627363.2:ENST00000631105.2:ENST00000628823.2:ENST00000625776.2:ENST00000451228.5:ENST00000451216.6:ENST00000626617.2:ENST00000628301.2:ENST00000626178.2:ENST00000620737.3:ENST00000626007.2	lncRNA	lncRNA	lncRNA	lncRNA	19	393	2	3.06915	3.074705	3.08026	2.64443e-6	1.63701e-6	0.00115411	7.74442e-4
chr20	31765457	31765557	7253925	0	+	0.4	(0.378,0.408]	chr20	736745	49	INTRON	INTRON	TPX2	ENSG00000088325.16	ENST00000340513.4:ENST00000300403.11	protein_coding	protein_coding	protein_coding	protein_coding	9	171	2	2.6666	3.07468	3.48276	1.23627e-4	6.90975e-5	0.0100054	0.00688956
chr10	28574610	28574710	4414220	0	+	0.51	(0.476,0.515]	chr10	407148	362	INTRON	INTRON	WAC	ENSG00000095787.24	ENST00000680735.1:ENST00000375664.8:ENST00000428935.6:ENST00000651598.1:ENST00000628285.3:ENST00000681112.1:ENST00000679570.1:ENST00000375646.5:ENST00000354911.9:ENST00000347934.8:ENST00000420266.6:ENST00000651885.1:ENST00000651441.1:ENST00000679398.1:ENST00000424454.5:ENST00000442148.6:ENST00000448193.5:ENST00000414108.6:ENST00000679428.1:ENST00000439676.5:ENST00000345541.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	38	2	1.80284	3.0746599999999997	4.34648	0.033161	0.0193566	0.145899	0.108861
chr9	123205387	123205487	4339845	0	-	0.4	(0.378,0.408]	chr9	398947	207	INTRON	INTRON	STRBP	ENSG00000165209.19	ENST00000348403.10:ENST00000360998.3:ENST00000407982.6:ENST00000479114.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	85	2	2.78931	3.0746450000000003	3.35998	0.00230615	6.20851e-4	0.0428247	0.0223951
chr7	118185255	118185353	3393157	0	+	0.44898	(0.44,0.476]	chr7	317576	11	UTR5	UTR5:EXON_MRNA:SS3_PROX:INTRON	LSM8	ENSG00000128534.8	ENST00000424702.1:ENST00000422760.1:ENST00000249299.7:ENST00000411938.1	protein_coding	protein_coding	protein_coding	protein_coding	8	151	2	2.3641200000000002	3.07464	3.78516	6.33326e-4	2.027e-5	0.0227457	0.0036568
chr1	114737563	114737663	528424	0	-	0.31	(0.28,0.32]	chr1	62312	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CSDE1	ENSG00000009307.17	ENST00000339438.10:ENST00000610726.5:ENST00000692719.1:ENST00000358528.9:ENST00000688211.1:ENST00000438362.7:ENST00000689217.1:ENST00000689989.1:ENST00000686025.1:ENST00000686781.1:ENST00000686123.1:ENST00000684913.1:ENST00000686235.1:ENST00000693467.1:ENST00000689732.1:ENST00000693644.1:ENST00000687759.1:ENST00000692044.1:ENST00000689885.1:ENST00000691403.1:ENST00000692629.1:ENST00000690013.1:ENST00000690420.1:ENST00000692950.1:ENST00000686667.1:ENST00000691032.1:ENST00000685676.1:ENST00000529046.6:ENST00000692672.1:ENST00000691377.1:ENST00000688611.1:ENST00000690207.1:ENST00000693311.1:ENST00000689510.1:ENST00000686581.1:ENST00000689727.1:ENST00000690784.1:ENST00000483030.2:ENST00000687548.1:ENST00000261443.9:ENST00000530886.5:ENST00000369530.5:ENST00000534699.5:ENST00000524652.2:ENST00000525132.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	45	2	1.81152	3.074585	4.33765	0.039714	0.034446	0.147767	0.143072
chr4	70909845	70909945	1970580	0	+	0.45	(0.44,0.476]	chr4	197571	69	INTRON	INTRON	MOB1B	ENSG00000173542.9	ENST00000502869.5:ENST00000509041.5:ENST00000309395.7:ENST00000396051.2:ENST00000511449.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	124	2	2.75777	3.07457	3.39137	2.63233e-4	1.73175e-4	0.0143626	0.0120833
chr20	47629278	47629376	7282281	0	+	0.367347	(0.35,0.378]	chr20	740514	6	INTRON	INTRON	NCOA3	ENSG00000124151.19	ENST00000371998.8:ENST00000372004.7:ENST00000371997.3	protein_coding	protein_coding	protein_coding	protein_coding	4	99	2	2.82526	3.07456	3.32386	0.00269503	1.8439e-4	0.0466389	0.0118315
chr18	1166182	1166282	6857507	0	+	0.37	(0.35,0.378]	chr18	679671	6	INTRON	INTRON	ENSG00000263551	ENSG00000263551.6	ENST00000580781.5:ENST00000670380.1:ENST00000667797.1:ENST00000583497.1	lncRNA	lncRNA	lncRNA	lncRNA	4	99	2	2.96893	3.074485	3.18004	0.00149997	3.8703e-4	0.0351802	0.0177751
chr6	167924314	167924409	3035339	0	+	0.389474	(0.378,0.408]	chr6	282832	10	INTRON	INTRON	AFDN	ENSG00000130396.21	ENST00000683244.1:ENST00000351017.9:ENST00000344191.8:ENST00000392112.5:ENST00000392108.7:ENST00000400822.7:ENST00000447894.6:ENST00000366809.6:ENST00000366806.6:ENST00000511637.5:ENST00000485634.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	55	2	2.46373	3.0744499999999997	3.68517	0.0382831	3.90172e-4	0.141795	0.0177751
chr12	54297263	54297363	5330958	0	-	0.53	(0.515,0.57]	chr12	508656	1	SS5_PROX	SS5_PROX:INTRON	NFE2	ENSG00000123405.14	ENST00000435572.7:ENST00000553070.5:ENST00000553198.1	protein_coding	protein_coding	protein_coding	protein_coding	2	44	2	2.83501	3.074445	3.31388	0.0117686	0.00174704	0.0894475	0.0386026
chr20	3973038	3973137	7308981	0	-	0.535354	(0.515,0.57]	chr20	744293	87	INTRON	INTRON	RNF24	ENSG00000101236.17	ENST00000336095.10:ENST00000358395.11:ENST00000432261.6:ENST00000545616.2	protein_coding	protein_coding	protein_coding	protein_coding	2	44	2	2.83501	3.074445	3.31388	0.0117686	0.00174704	0.0894475	0.0386026
chr3	179256664	179256763	1878224	0	-	0.333333	(0.32,0.35]	chr3	187618	52	INTRON	INTRON	KCNMB3	ENSG00000171121.17	ENST00000485523.5:ENST00000497599.5:ENST00000392686.6:ENST00000349697.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	60	2	2.90786	3.0743650000000002	3.24087	0.00993008	0.00420518	0.0877296	0.0572185
chr5	181256602	181256701	2563433	0	+	0.383838	(0.378,0.408]	chr5	245313	10	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	CTC-338M12.4	ENSG00000233937.8	ENST00000506340.3:ENST00000505151.6:ENST00000511331.5:ENST00000417281.2:ENST00000599439.2	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	3	70	2	2.78867	3.074325	3.35998	0.00230615	0.00226991	0.0437013	0.0428247
chr17	82757114	82757213	6694247	0	+	0.606061	(0.57,1]	chr17	654816	5	INTRON	INTRON	TBCD	ENSG00000141556.22	ENST00000682479.1:ENST00000682722.1:ENST00000684464.1:ENST00000684544.1:ENST00000681983.1:ENST00000684361.1:ENST00000683184.1:ENST00000683282.1:ENST00000684408.1:ENST00000355528.9:ENST00000683444.1:ENST00000684776.1:ENST00000683041.1:ENST00000684760.1:ENST00000684349.1:ENST00000682213.1:ENST00000683009.1:ENST00000682921.1:ENST00000682107.1:ENST00000539345.6:ENST00000684000.1:ENST00000684188.1:ENST00000684429.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	50	2	2.39678	3.074215	3.75165	0.00143653	1.54884e-4	0.0347139	0.0113252
chr6	166953523	166953621	3264291	0	-	0.346939	(0.32,0.35]	chr6	303043	11	EXON_MRNA	EXON_MRNA:INTRON	ENSG00000249141:RNASET2	ENSG00000249141.1:ENSG00000026297.17	ENST00000507747.1:ENST00000508775.6:ENST00000683770.1:ENST00000611959.2:ENST00000620173.5:ENST00000682774.1:ENST00000684236.1:ENST00000683968.1:ENST00000366855.10:ENST00000421787.5:ENST00000476238.6:ENST00000028008.9:ENST00000478180.6:ENST00000499370.6:ENST00000358165.7:ENST00000683158.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	79	2	3.02686	3.07416	3.12146	0.00630799	8.86699e-4	0.0687526	0.0271952
chr16	89648378	89648478	6543686	0	-	0.71	(0.57,1]	chr16	634307	8	CDS	CDS:UTR3:EXON_MRNA:INTRON	CHMP1A	ENSG00000131165.16	ENST00000675909.1:ENST00000397901.8:ENST00000676355.1:ENST00000675161.1:ENST00000676402.1:ENST00000675016.1:ENST00000551981.6:ENST00000675309.1:ENST00000675952.1:ENST00000676342.1:ENST00000535997.7:ENST00000674799.1:ENST00000675536.1:ENST00000549328.2:ENST00000675778.1:ENST00000676118.1:ENST00000675076.1:ENST00000549139.5:ENST00000550102.5:ENST00000548650.1:ENST00000547614.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	66	2	2.74113	3.074095	3.40706	1.93623e-4	5.92509e-5	0.0127226	0.00631599
chr10	68029128	68029226	4637476	0	-	0.5	(0.476,0.515]	chr10	426404	31	INTRON	INTRON	HERC4	ENSG00000148634.16	ENST00000277817.10:ENST00000373700.9:ENST00000412272.6:ENST00000395198.7:ENST00000473533.6:ENST00000427635.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	81	2	2.37448	3.07391	3.77334	0.00419067	3.52709e-4	0.0591344	0.0174637
chr15	58638597	58638696	6192392	0	-	0.353535	(0.35,0.378]	chr15	589923	49	INTRON	INTRON	ADAM10	ENSG00000137845.15	ENST00000260408.8:ENST00000402627.5:ENST00000561288.1:ENST00000396136.6:ENST00000559053.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	74	2	2.48623	3.07387	3.66151	0.00938784	4.717e-4	0.0817766	0.0196294
chr19	58265569	58265669	7106901	0	+	0.56	(0.515,0.57]	chr19	713358	15	INTRON	INTRON	ZNF544	ENSG00000198131.15	ENST00000596929.5:ENST00000595981.5:ENST00000651034.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	59	2	2.38476	3.07385	3.76294	0.0110593	2.08636e-4	0.0873897	0.0125926
chr17	22099401	22099501	6578657	0	+	0.5	(0.476,0.515]	chr17	639556	81	INTRON	INTRON	UBBP4	ENSG00000263563.7	ENST00000648259.1:ENST00000688301.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	2	51	2	2.69967	3.073755	3.44784	0.0195838	0.00113238	0.109483	0.0308465
chr5	154860567	154860664	2527695	0	+	0.381443	(0.378,0.408]	chr5	241732	3	INTRON	INTRON	CNOT8	ENSG00000155508.14	ENST00000521174.5:ENST00000523698.5:ENST00000517876.5:ENST00000520472.5:ENST00000519211.5:ENST00000522458.5:ENST00000403027.6:ENST00000521450.5:ENST00000519903.5:ENST00000517568.5:ENST00000524105.5:ENST00000519430.5:ENST00000285896.11:ENST00000521583.5:ENST00000520671.5:ENST00000518028.5:ENST00000519404.5:ENST00000521729.5:ENST00000519394.5:ENST00000518775.5:ENST00000522644.5:ENST00000521402.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	96	2	2.37969	3.073715	3.76774	0.00190547	4.21442e-4	0.0403738	0.0189827
chr1	745125	745225	357417	0	-	0.42	(0.408,0.44]	chr1	41161	3	SS3_PROX	SS3_PROX:INTRON	ENSG00000230021:ENSG00000228327	ENSG00000230021.10:ENSG00000228327.4	ENST00000634337.2:ENST00000635509.2:ENST00000506640.2	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene:transcribed_unprocessed_pseudogene	processed_transcript	4	85	2	2.59487	3.0735099999999997	3.55215	0.00202403	7.01039e-4	0.04086	0.0241881
chr10	22624673	22624773	4579598	0	-	0.37	(0.35,0.378]	chr10	422018	146	INTRON	INTRON	PIP4K2A	ENSG00000150867.14	ENST00000376573.9:ENST00000545335.5	protein_coding	protein_coding	protein_coding	protein_coding	2	55	2	3.03814	3.073385	3.10863	0.00767003	0.00470896	0.075364	0.0631419
chr12	122866321	122866420	5442276	0	-	0.363636	(0.35,0.378]	chr12	520607	11	UTR3	UTR3:EXON_MRNA	VPS37B	ENSG00000139722.7	ENST00000267202.7	protein_coding	protein_coding	protein_coding	protein_coding	2	55	2	3.03814	3.073385	3.10863	0.00767003	0.00470896	0.075364	0.0631419
chr10	96536086	96536186	4673914	0	-	0.35	(0.32,0.35]	chr10	430679	25	INTRON	INTRON	TM9SF3	ENSG00000077147.16	ENST00000371142.9:ENST00000649367.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	28	2	2.23182	3.07334	3.91486	0.068598	0.0450361	0.184298	0.163255
chr6	30666928	30667027	3077549	0	-	0.323232	(0.32,0.35]	chr6	286381	8	INTRON	INTRON	DHX16	ENSG00000204560.10	ENST00000376442.8:ENST00000415603.1	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	2.23182	3.07334	3.91486	0.068598	0.0450361	0.184298	0.163255
chr6	39213154	39213254	3090642	0	-	0.34	(0.32,0.35]	chr6	289173	168	INTRON	INTRON	KCNK5	ENSG00000164626.9	ENST00000359534.4	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	2.23182	3.07334	3.91486	0.068598	0.0450361	0.184298	0.163255
chr20	38932799	38932898	7272487	0	+	0.484848	(0.476,0.515]	chr20	739054	55	INTRON	INTRON	FAM83D	ENSG00000101447.15	ENST00000619304.4:ENST00000619850.2	protein_coding	protein_coding	protein_coding	protein_coding	2	51	2	2.94692	3.073335	3.19975	0.00794331	0.00383299	0.0797304	0.0542786
chr11	118459670	118459769	4872353	0	+	0.515152	(0.476,0.515]	chr11	454987	98	INTRON	INTRON	ENSG00000285827:KMT2A	ENSG00000285827.1:ENSG00000118058.24	ENST00000648261.1:ENST00000389506.10:ENST00000534358.8:ENST00000533790.3:ENST00000527869.7:ENST00000649690.2:ENST00000691053.1:ENST00000531904.6:ENST00000649699.1:ENST00000648029.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	37	2	1.61586	3.0730450000000005	4.53023	0.0567093	0.0119748	0.185107	0.0899583
chr12	95153493	95153592	5392572	0	-	0.494949	(0.476,0.515]	chr12	514166	1	INTRON	INTRON	FGD6	ENSG00000180263.14	ENST00000343958.9:ENST00000451107.3:ENST00000546711.5:ENST00000549499.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	37	2	1.61586	3.0730450000000005	4.53023	0.0567093	0.0119748	0.185107	0.0899583
chr1	193022625	193022725	612491	0	-	0.37	(0.35,0.378]	chr1	72443	3	SS5_PROX	SS5_PROX:INTRON	UCHL5	ENSG00000116750.14	ENST00000367455.8:ENST00000367454.6:ENST00000420791.5:ENST00000449480.5:ENST00000367450.7:ENST00000367451.8:ENST00000367449.5:ENST00000367448.5:ENST00000443327.5:ENST00000416915.1	protein_coding	protein_coding	protein_coding	protein_coding	6	114	2	1.77377	3.073025	4.37228	0.0180971	1.05524e-5	0.107237	0.00237156
chr11	77813901	77814001	4995910	0	-	0.53	(0.515,0.57]	chr11	472051	2	SS3_PROX	SS3_PROX:INTRON	RSF1	ENSG00000048649.14	ENST00000308488.11:ENST00000528095.5:ENST00000440064.2:ENST00000467567.1:ENST00000530604.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	44	2	1.54678	3.07296	4.59914	0.0324987	0.00616166	0.145164	0.0676501
chr19	54460928	54461027	7099464	0	+	0.606061	(0.57,1]	chr19	712032	1	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	LENG8	ENSG00000167615.17	ENST00000616932.4:ENST00000326764.10:ENST00000376514.6:ENST00000610347.1:ENST00000421200.1	protein_coding	protein_coding	protein_coding	protein_coding	66	677	2	2.79996	3.0729550000000003	3.34595	2.35142e-8	2.54706e-11	5.16614e-5	5.5296e-7
chr7	105377450	105377550	3603791	0	-	0.52	(0.515,0.57]	chr7	336161	705	INTRON	INTRON	SRPK2	ENSG00000135250.17	ENST00000393651.8:ENST00000482897.5:ENST00000460391.5:ENST00000462282.5:ENST00000465112.5:ENST00000482862.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	93	2	2.89379	3.0729550000000003	3.25212	2.98479e-4	2.5577e-4	0.0154922	0.0148225
chr20	35737767	35737867	7336512	0	-	0.49	(0.476,0.515]	chr20	747495	8	INTRON	INTRON	RBM39	ENSG00000131051.24	ENST00000253363.11:ENST00000639702.1:ENST00000656873.1:ENST00000463004.5:ENST00000361162.10:ENST00000461283.5:ENST00000403542.6:ENST00000338163.10:ENST00000528062.7:ENST00000429968.5:ENST00000444878.5:ENST00000665058.1:ENST00000374038.7:ENST00000412738.5:ENST00000434927.5:ENST00000425184.5:ENST00000481037.5:ENST00000455343.5:ENST00000416108.5:ENST00000426951.5:ENST00000477334.1:ENST00000442447.5:ENST00000449489.5:ENST00000433027.5:ENST00000487604.1:ENST00000453310.5:ENST00000416529.5:ENST00000397370.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	143	2	1.76382	3.0729349999999998	4.38205	0.00430241	1.51595e-5	0.0599409	0.00311809
chr1	52418763	52418861	103853	0	+	0.306122	(0.28,0.32]	chr1	13629	22	UTR3	UTR3:EXON_MRNA	PRPF38A	ENSG00000134748.13	ENST00000257181.10	protein_coding	protein_coding	protein_coding	protein_coding	2	36	2	1.90263	3.072915	4.2432	0.0503272	0.0479043	0.17488	0.153019
chr1	202519377	202519477	294498	0	+	0.41	(0.408,0.44]	chr1	33886	166	INTRON	INTRON	PPP1R12B	ENSG00000077157.22	ENST00000391959.5:ENST00000608999.6:ENST00000290419.9:ENST00000491336.5:ENST00000466273.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	94	2	2.15894	3.07287	3.9868	0.00504142	1.3698e-4	0.0646039	0.0106749
chr10	69140535	69140635	4444714	0	+	0.46	(0.44,0.476]	chr10	410023	71	INTRON	INTRON	VPS26A	ENSG00000122958.15	ENST00000373382.5:ENST00000395098.5:ENST00000489656.5:ENST00000263559.11:ENST00000497564.5:ENST00000490696.5:ENST00000467852.1:ENST00000489794.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	190	2	2.92508	3.072835	3.22059	1.60775e-4	5.9221e-6	0.0116076	0.00170648
chr1	227317556	227317649	651712	0	-	0.408602	(0.408,0.44]	chr1	77115	5	UTR5	UTR5:EXON_MRNA	CDC42BPA	ENSG00000143776.20	ENST00000366766.8:ENST00000366769.7:ENST00000334218.9	protein_coding	protein_coding	protein_coding	protein_coding	16	331	2	2.79253	3.07278	3.35303	2.80917e-5	5.01781e-7	0.00435887	3.78502e-4
chr1	228489256	228489356	333156	0	+	0.43	(0.408,0.44]	chr1	38793	2	SS5_PROX	SS5_PROX:INTRON	RNF187	ENSG00000168159.15	ENST00000305943.9:ENST00000482739.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	51	2	2.78122	3.0725	3.36378	0.015812	0.0016048	0.101453	0.0367961
chr12	76049462	76049525	5369844	0	-	0.412698	(0.408,0.44]	chr12	512250	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NAP1L1	ENSG00000187109.15	ENST00000618691.5:ENST00000552056.5:ENST00000393263.7:ENST00000431879.7:ENST00000552147.5:ENST00000547773.5:ENST00000552013.1:ENST00000544816.5:ENST00000542344.5:ENST00000535020.6:ENST00000549596.5:ENST00000547993.5:ENST00000547969.5:ENST00000552342.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	51	2	2.78122	3.0725	3.36378	0.015812	0.0016048	0.101453	0.0367961
chr17	22145365	22145465	6579117	0	+	0.38	(0.378,0.408]	chr17	639556	541	INTRON	INTRON	UBBP4	ENSG00000263563.7	ENST00000648259.1:ENST00000688301.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	7	118	2	2.34772	3.07238	3.79704	7.16572e-4	3.6912e-4	0.0244192	0.0178272
chr19	28534099	28534199	7166436	0	-	0.4	(0.378,0.408]	chr19	724189	659	INTRON	INTRON	ENSG00000283403:ENSG00000267243	ENSG00000283403.1:ENSG00000267243.6	ENST00000592347.5:ENST00000593065.5	lncRNA	lncRNA	lncRNA	lncRNA	38	799	2	3.04259	3.072245	3.1019	1.29457e-6	8.8113e-8	7.40532e-4	1.27261e-4
chr3	185937724	185937824	1886602	0	-	0.63	(0.57,1]	chr3	188646	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	TRA2B	ENSG00000136527.19	ENST00000453386.7:ENST00000456380.5:ENST00000382191.4:ENST00000465245.1:ENST00000485530.5:ENST00000480461.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	19	169	2	2.37854	3.0722199999999997	3.7659	1.61479e-5	5.8475e-8	0.00323271	1.05182e-4
chr19	55256064	55256162	7213780	0	-	0.438776	(0.408,0.44]	chr19	732806	4	INTRON	INTRON	PPP6R1	ENSG00000105063.19	ENST00000412770.7	protein_coding	protein_coding	protein_coding	protein_coding	2	51	2	3.05705	3.072215	3.08738	0.00658331	0.00478231	0.0701901	0.0636201
chr6	147776540	147776640	2991764	0	+	0.42	(0.408,0.44]	chr6	280177	391	INTRON	INTRON	ENSG00000227681	ENSG00000227681.5	ENST00000427015.1	lncRNA	lncRNA	lncRNA	lncRNA	2	51	2	3.05705	3.072215	3.08738	0.00658331	0.00478231	0.0701901	0.0636201
chr10	101812338	101812433	4680915	0	-	0.473684	(0.44,0.476]	chr10	432012	17	INTRON	INTRON	OGA	ENSG00000198408.14	ENST00000439817.5:ENST00000361464.8:ENST00000357797.9:ENST00000370094.7:ENST00000429860.1	protein_coding	protein_coding	protein_coding	protein_coding	13	270	2	2.70484	3.0719399999999997	3.43904	9.31723e-5	5.24465e-7	0.00857086	3.90753e-4
chr5	131286027	131286127	2484856	0	+	0.46	(0.44,0.476]	chr5	237114	215	INTRON	INTRON	CDC42SE2	ENSG00000158985.14	ENST00000502840.5:ENST00000511432.5:ENST00000506419.5:ENST00000395246.5:ENST00000505065.2:ENST00000504701.5:ENST00000503291.5:ENST00000360515.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	81	2	2.42643	3.07189	3.71735	0.0033369	4.72844e-4	0.0528877	0.0201458
chr16	2976089	2976189	6432832	0	-	0.52	(0.515,0.57]	chr16	619088	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PKMYT1	ENSG00000127564.17	ENST00000431515.6:ENST00000440027.6:ENST00000262300.13:ENST00000574385.5:ENST00000574730.5:ENST00000573944.5:ENST00000382240.9:ENST00000576268.1:ENST00000574415.5:ENST00000575632.5:ENST00000572059.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	48	2	2.56306	3.07185	3.58064	0.0247751	6.54693e-4	0.131869	0.0233335
chr19	2272246	2272344	6997102	0	+	0.571429	(0.57,1]	chr19	693662	4	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	OAZ1	ENSG00000104904.12	ENST00000590943.6:ENST00000592787.2:ENST00000602676.6:ENST00000581150.6:ENST00000582888.8:ENST00000593012.1:ENST00000588673.3:ENST00000586054.2:ENST00000589361.2:ENST00000592727.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	22	186	2	2.47256	3.071835	3.67111	3.31491e-6	1.64619e-7	0.00118585	1.98188e-4
chr11	2972479	2972579	4891793	0	-	0.3	(0.28,0.32]	chr11	458332	2	SS3_PROX	SS3_PROX:INTRON	NAP1L4	ENSG00000205531.13	ENST00000620138.4:ENST00000380542.9:ENST00000526115.5:ENST00000532325.6:ENST00000448187.5:ENST00000399614.6:ENST00000430811.5:ENST00000529361.5:ENST00000528968.5:ENST00000530064.5:ENST00000526842.5:ENST00000531291.5:ENST00000455338.6:ENST00000534372.1	protein_coding	protein_coding	protein_coding	protein_coding	3	86	2	2.33381	3.071815	3.80982	0.0174951	3.09593e-4	0.104863	0.0157609
chr7	130079004	130079103	3413679	0	+	0.292929	(0.28,0.32]	chr7	319098	78	INTRON	INTRON	KLHDC10	ENSG00000128607.14	ENST00000335420.10:ENST00000463413.1:ENST00000468226.1	protein_coding	protein_coding	protein_coding	protein_coding	4	119	2	2.50462	3.0718050000000003	3.63899	0.0102735	4.64392e-5	0.0850389	0.00555027
chr7	105050895	105050994	3374991	0	+	0.50505	(0.476,0.515]	chr7	315877	95	INTRON	INTRON	KMT2E	ENSG00000005483.22	ENST00000622386.2:ENST00000257745.9:ENST00000334884.9:ENST00000311117.8:ENST00000478990.5:ENST00000495267.5:ENST00000476671.5:ENST00000667857.1:ENST00000474203.5:ENST00000482560.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	131	2	2.72421	3.071795	3.41938	0.00107964	1.62239e-5	0.0302522	0.00304426
chr20	383414	383510	7219022	0	+	0.395833	(0.378,0.408]	chr20	733506	4	INTRON	INTRON	TRIB3	ENSG00000101255.12	ENST00000615226.4:ENST00000217233.9:ENST00000449710.5:ENST00000422053.3	protein_coding	protein_coding	protein_coding	protein_coding	3	71	2	3.05502	3.071555	3.08809	0.00689519	5.71831e-4	0.0717484	0.0217398
chr16	2256214	2256312	6431572	0	-	0.581633	(0.57,1]	chr16	618786	6	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	RNPS1	ENSG00000205937.12	ENST00000397086.6:ENST00000566458.5:ENST00000320225.10:ENST00000562205.1:ENST00000566397.5:ENST00000565678.5:ENST00000561718.5:ENST00000568631.5:ENST00000569598.6:ENST00000301730.12:ENST00000567147.5:ENST00000565243.2:ENST00000565870.5:ENST00000561518.5:ENST00000564311.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	56	2	1.89283	3.071535	4.25024	0.00863312	6.01239e-6	0.078644	0.0017156
chr1	161793818	161793917	236130	0	+	0.333333	(0.32,0.35]	chr1	28552	11	INTRON	INTRON	ATF6	ENSG00000118217.7	ENST00000680688.1:ENST00000679853.1:ENST00000681738.1:ENST00000681801.1:ENST00000681779.1:ENST00000367942.4:ENST00000681001.1:ENST00000679886.1:ENST00000681169.1:ENST00000681492.1:ENST00000680481.1:ENST00000680180.1:ENST00000681187.1:ENST00000680462.1:ENST00000681557.1:ENST00000681912.1:ENST00000679833.1:ENST00000681541.1:ENST00000681036.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	35	2	2.07985	3.07142	4.06299	0.0559439	0.0303092	0.165463	0.143025
chr6	17690614	17690713	3066051	0	-	0.323232	(0.32,0.35]	chr6	284872	16	INTRON	INTRON	NUP153	ENSG00000124789.12	ENST00000613258.4:ENST00000537253.5:ENST00000262077.3	protein_coding	protein_coding	protein_coding	protein_coding	2	35	2	2.07985	3.07142	4.06299	0.0559439	0.0303092	0.165463	0.143025
chr10	73028968	73029067	4647156	0	-	0.434343	(0.408,0.44]	chr10	427494	117	INTRON	INTRON	P4HA1	ENSG00000122884.13	ENST00000394890.7:ENST00000307116.6:ENST00000373008.6:ENST00000440381.5:ENST00000263556.3	protein_coding	protein_coding	protein_coding	protein_coding	9	182	2	2.68491	3.071415	3.45792	9.78505e-5	2.47596e-5	0.00831756	0.00409416
chr20	32391923	32392023	7256162	0	+	0.33	(0.32,0.35]	chr20	737076	195	INTRON	INTRON	ASXL1	ENSG00000171456.21	ENST00000651418.1:ENST00000375687.10:ENST00000613218.4:ENST00000644587.1:ENST00000620121.4:ENST00000646985.1:ENST00000643168.1:ENST00000306058.9:ENST00000645688.1:ENST00000470145.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	79	2	2.38582	3.07138	3.75694	0.0138529	3.37248e-4	0.0953077	0.0163178
chr7	43651997	43652095	3525598	0	-	0.438776	(0.408,0.44]	chr7	328755	9	INTRON	INTRON	COA1	ENSG00000106603.20	ENST00000415076.6:ENST00000446330.6:ENST00000446564.5:ENST00000438444.5:ENST00000223336.11:ENST00000310564.10:ENST00000415798.5:ENST00000431651.5:ENST00000451651.5:ENST00000418140.5:ENST00000448704.5:ENST00000470156.1:ENST00000457939.1:ENST00000420441.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	110	2	2.79763	3.07138	3.34513	5.76635e-4	2.26766e-4	0.0218153	0.0138494
chr9	131174959	131175059	4216137	0	+	0.46	(0.44,0.476]	chr9	386620	1	SS3_PROX	SS3_PROX:INTRON	NUP214	ENSG00000126883.19	ENST00000695497.1:ENST00000695498.1:ENST00000695496.1:ENST00000695495.1:ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000525980.5:ENST00000526346.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	84	2	2.59185	3.071265	3.55068	0.00200767	7.06861e-4	0.0408395	0.0241881
chr10	94559194	94559294	4499752	0	+	0.32	(0.28,0.32]	chr10	414236	6	INTRON	INTRON	HELLS	ENSG00000119969.15	ENST00000239026.10:ENST00000371332.8:ENST00000348459.10:ENST00000419900.5:ENST00000394036.5:ENST00000394045.5:ENST00000462057.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	30	2	2.2609	3.071175	3.88145	0.0671429	0.0561985	0.18407	0.183051
chr14	54998207	54998307	5899752	0	-	0.3	(0.28,0.32]	chr14	560327	20	INTRON	INTRON	WDHD1	ENSG00000198554.12	ENST00000360586.8:ENST00000420358.2	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	2.2609	3.071175	3.88145	0.0671429	0.0561985	0.18407	0.183051
chr3	142162622	142162722	1835504	0	-	0.32	(0.28,0.32]	chr3	184380	52	UTR3	UTR3:EXON_MRNA	GK5	ENSG00000175066.16	ENST00000392993.7	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	2.2609	3.071175	3.88145	0.0671429	0.0561985	0.18407	0.183051
chr4	85756915	85757015	1991315	0	+	0.31	(0.28,0.32]	chr4	198951	333	INTRON	INTRON	ARHGAP24	ENSG00000138639.18	ENST00000395184.6:ENST00000503995.5:ENST00000512201.5	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	2.2609	3.071175	3.88145	0.0671429	0.0561985	0.18407	0.183051
chr7	151515001	151515101	3674877	0	-	0.38	(0.378,0.408]	chr7	341207	165	INTRON	INTRON	RHEB	ENSG00000106615.10	ENST00000262187.10:ENST00000472642.5:ENST00000478470.5:ENST00000496004.5:ENST00000470370.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	15	317	2	2.98332	3.071135	3.15895	1.21449e-5	3.30834e-6	0.00277246	0.00118585
chr2	20307877	20307977	1076345	0	-	0.34	(0.32,0.35]	chr2	114996	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	PUM2	ENSG00000055917.16	ENST00000338086.9:ENST00000361078.7:ENST00000440577.5	protein_coding	protein_coding	protein_coding	protein_coding	2	36	2	2.19668	3.0709850000000003	3.94529	0.0693433	0.021398	0.184298	0.123719
chr7	98943901	98943997	3359934	0	+	0.333333	(0.32,0.35]	chr7	313524	5	INTRON	INTRON	TRRAP	ENSG00000196367.14	ENST00000355540.7:ENST00000359863.8:ENST00000628380.2:ENST00000456197.2:ENST00000446306.7	protein_coding	protein_coding	protein_coding	protein_coding	2	36	2	2.19668	3.0709850000000003	3.94529	0.0693433	0.021398	0.184298	0.123719
chr17	62481905	62482005	6652909	0	+	0.42	(0.408,0.44]	chr17	649301	3	INTRON	INTRON	TLK2	ENSG00000146872.19	ENST00000582809.5:ENST00000684213.1:ENST00000583843.5:ENST00000579450.5:ENST00000577616.1:ENST00000582195.6:ENST00000682085.1:ENST00000580705.5:ENST00000346027.10:ENST00000326270.13:ENST00000682203.1:ENST00000343388.11:ENST00000683536.1:ENST00000684440.1:ENST00000684772.1:ENST00000682274.1:ENST00000682827.1:ENST00000583690.6:ENST00000682075.1:ENST00000683104.1:ENST00000684012.1:ENST00000581041.5:ENST00000684553.1:ENST00000683737.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	91	2	2.85723	3.07082	3.28441	0.00211413	2.01433e-4	0.0415897	0.0124157
chr22	20576428	20576527	7480063	0	+	0.59596	(0.57,1]	chr22	763027	8	INTRON	INTRON	MED15	ENSG00000099917.17	ENST00000433831.5:ENST00000292733.11:ENST00000263205.11:ENST00000406969.5:ENST00000382974.6:ENST00000492381.5:ENST00000478831.5:ENST00000489651.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	50	2	2.22366	3.0707950000000004	3.91793	0.00344378	5.86096e-5	0.0539802	0.00668534
chr10	49960175	49960275	4432813	0	+	0.46	(0.44,0.476]	chr10	408699	13	INTRON	INTRON	TIMM23B:TIMM23B-AGAP6	ENSG00000204152.14:ENSG00000178440.8	ENST00000478381.5:ENST00000651259.3:ENST00000651763.1:ENST00000651208.1:ENST00000652716.1:ENST00000483296.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	10	206	2	2.94433	3.07074	3.19715	3.4474e-5	1.84359e-5	0.00495154	0.00328489
chr3	10142187	10142287	1363115	0	+	0.68	(0.57,1]	chr3	143663	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	VHL	ENSG00000134086.9	ENST00000696153.1:ENST00000256474.3:ENST00000696142.1:ENST00000345392.2:ENST00000696143.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	78	2	3.03019	3.0706800000000003	3.11117	1.05548e-4	1.50448e-5	0.00920724	0.00292449
chr2	62366840	62366940	790998	0	+	0.36	(0.35,0.378]	chr2	88716	48	INTRON	INTRON	ENSG00000228541	ENSG00000228541.2	ENST00000689590.1:ENST00000687402.1	lncRNA	lncRNA	lncRNA	lncRNA	5	105	2	2.36933	3.0706550000000004	3.77198	0.00285204	2.78147e-4	0.0474836	0.0148626
chr21	14538334	14538434	7428125	0	-	0.36	(0.35,0.378]	chr21	757769	146	INTRON	INTRON	SAMSN1	ENSG00000155307.19	ENST00000647101.1:ENST00000644288.1:ENST00000400564.5:ENST00000400566.6:ENST00000285670.7:ENST00000619120.4:ENST00000493640.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	34	2	2.17079	3.070555	3.97032	0.0578667	0.0225978	0.167723	0.124921
chr7	140923565	140923665	3663722	0	-	0.46	(0.44,0.476]	chr7	340105	730	INTRON	INTRON	BRAF	ENSG00000157764.14	ENST00000496384.7:ENST00000644969.2:ENST00000646891.1:ENST00000644905.1:ENST00000642228.1:ENST00000288602.11:ENST00000646730.1:ENST00000497784.2:ENST00000642272.1:ENST00000642808.1:ENST00000643790.1:ENST00000469930.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	92	2	2.94321	3.0705299999999998	3.19785	0.00111162	4.51048e-4	0.0305384	0.0196417
chr7	129040256	129040356	3636434	0	-	0.23	[0,0.28]	chr7	338142	217	INTRON	INTRON	TNPO3	ENSG00000064419.14	ENST00000627585.2:ENST00000265388.10:ENST00000471234.5:ENST00000482320.5:ENST00000471166.1	protein_coding	protein_coding	protein_coding	protein_coding	5	160	2	2.92526	3.0705	3.21574	0.00293591	1.31911e-4	0.0483234	0.00990163
chr2	27354002	27354101	1086851	0	-	0.343434	(0.32,0.35]	chr2	116362	30	INTRON	INTRON	GTF3C2	ENSG00000115207.15	ENST00000359541.6:ENST00000264720.8:ENST00000457748.1:ENST00000423998.1	protein_coding	protein_coding	protein_coding	protein_coding	3	80	2	2.22429	3.070475	3.91666	0.0226421	1.54585e-4	0.117557	0.0106835
chr4	128067692	128067791	2042658	0	+	0.40404	(0.378,0.408]	chr4	202845	51	INTRON	INTRON	LARP1B	ENSG00000138709.19	ENST00000512292.5:ENST00000326639.11:ENST00000508819.5:ENST00000394288.7:ENST00000432347.6:ENST00000649983.1:ENST00000650359.1:ENST00000648358.1	protein_coding	protein_coding	protein_coding	protein_coding	3	72	2	2.95459	3.070335	3.18608	0.00957623	3.50013e-4	0.0820838	0.0166791
chrX	111695657	111695757	7702163	0	+	0.33	(0.32,0.35]	chrX	788221	56	INTRON	INTRON	ALG13	ENSG00000101901.12	ENST00000487141.5:ENST00000394780.8:ENST00000251943.8:ENST00000610588.4:ENST00000621367.4:ENST00000622997.3:ENST00000624161.3:ENST00000636363.1:ENST00000624881.3:ENST00000495283.5:ENST00000486353.5:ENST00000623144.3:ENST00000470971.5:ENST00000623148.3:ENST00000471924.5:ENST00000436609.5:ENST00000470704.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	156	2	2.58553	3.0703199999999997	3.55511	0.00263388	9.97929e-6	0.045806	0.00229529
chr1	747715	747815	357444	0	-	0.39	(0.378,0.408]	chr1	41168	5	INTRON	INTRON	ENSG00000230021:ENSG00000228327	ENSG00000230021.10:ENSG00000228327.4	ENST00000634337.2:ENST00000635509.2:ENST00000506640.2	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene:transcribed_unprocessed_pseudogene	processed_transcript	2	53	2	2.9917	3.07031	3.14892	0.0068789	0.00499984	0.0749442	0.0617433
chr6	87164702	87164802	2913348	0	+	0.4	(0.378,0.408]	chr6	275276	86	INTRON	INTRON	ZNF292	ENSG00000188994.13	ENST00000392985.3:ENST00000369577.8:ENST00000369578.6:ENST00000518845.1:ENST00000339907.8:ENST00000496806.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	53	2	2.9917	3.07031	3.14892	0.0068789	0.00499984	0.0749442	0.0617433
chr3	155883033	155883132	1537251	0	+	0.40404	(0.378,0.408]	chr3	160082	118	INTRON	INTRON	GMPS	ENSG00000163655.16	ENST00000496455.7:ENST00000295920.7	protein_coding	protein_coding	protein_coding	protein_coding	3	71	2	2.66643	3.0701	3.47377	0.00470023	0.00103087	0.0600108	0.0294094
chr9	131158183	131158283	4215961	0	+	0.46	(0.44,0.476]	chr9	386591	59	INTRON	INTRON	NUP214	ENSG00000126883.19	ENST00000695497.1:ENST00000695498.1:ENST00000695496.1:ENST00000695495.1:ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000651022.1:ENST00000525980.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	205	2	1.97846	3.070075	4.16169	0.00168489	8.46621e-7	0.0370386	5.20245e-4
chr1	211314155	211314252	306264	0	+	0.298969	(0.28,0.32]	chr1	35318	5	UTR3	UTR3:EXON_MRNA	RCOR3	ENSG00000117625.14	ENST00000367006.8:ENST00000419091.7:ENST00000367005.8:ENST00000486666.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	104	2	2.03106	3.070045	4.10903	0.0208123	7.08337e-5	0.111549	0.00695952
chr7	5202747	5202847	3272087	0	+	0.3	(0.28,0.32]	chr7	304097	27	INTRON	INTRON	WIPI2	ENSG00000157954.15	ENST00000401525.7:ENST00000288828.9:ENST00000404704.7:ENST00000466014.5:ENST00000485854.5:ENST00000382384.6:ENST00000496867.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	85	2	2.70831	3.0699449999999997	3.43158	0.00378444	0.00244075	0.0562562	0.0445752
chr5	91379781	91379881	2674957	0	-	0.37	(0.35,0.378]	chr5	253119	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ARRDC3	ENSG00000113369.9	ENST00000265138.4:ENST00000514284.5:ENST00000508948.5:ENST00000503192.5:ENST00000507075.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	119	2	2.99602	3.06991	3.1438	0.00133795	9.93672e-5	0.0335491	0.00838841
chr1	61148426	61148526	128056	0	+	0.36	(0.35,0.378]	chr1	14778	155	INTRON	INTRON	NFIA	ENSG00000162599.17	ENST00000371191.5:ENST00000664495.1:ENST00000476646.5:ENST00000407417.7:ENST00000479364.1:ENST00000371189.8:ENST00000670151.1:ENST00000664149.1:ENST00000662015.1:ENST00000403491.8:ENST00000371187.7:ENST00000485903.6:ENST00000371185.6:ENST00000371184.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	54	2	1.64329	3.069775	4.49626	0.0384351	0.00917582	0.142316	0.0855292
chr9	69714872	69714971	4263504	0	-	0.353535	(0.35,0.378]	chr9	392370	55	UTR3	UTR3:EXON_MRNA	PTAR1	ENSG00000188647.13	ENST00000377200.9:ENST00000340434.5	protein_coding	protein_coding	protein_coding	protein_coding	7	151	2	2.50365	3.06975	3.63585	5.68631e-4	6.38872e-5	0.0217398	0.00711194
chr11	68551783	68551881	4818256	0	+	0.408163	(0.378,0.408]	chr11	448965	2	INTRON	INTRON	PPP6R3	ENSG00000110075.15	ENST00000529907.5:ENST00000534534.5:ENST00000524845.5:ENST00000393800.7:ENST00000265637.8:ENST00000524904.5:ENST00000393801.7:ENST00000265636.9:ENST00000529710.5:ENST00000527403.6	protein_coding	protein_coding	protein_coding	protein_coding	8	172	2	2.92789	3.0696950000000003	3.2115	1.09972e-4	4.41741e-5	0.00943606	0.0053901
chr1	229550131	229550230	653687	0	-	0.30303	(0.28,0.32]	chr1	77488	3	INTRON	INTRON	ABCB10	ENSG00000135776.5	ENST00000344517.5	protein_coding	protein_coding	protein_coding	protein_coding	2	63	2	2.87382	3.0696649999999996	3.26551	0.014868	0.0030714	0.0989021	0.0509893
chr16	88730223	88730321	6539640	0	-	0.642857	(0.57,1]	chr16	633912	22	INTRON	INTRON	PIEZO1	ENSG00000103335.22	ENST00000301015.14	protein_coding	protein_coding	protein_coding	protein_coding	7	61	2	2.08468	3.0696000000000003	4.05452	0.00216781	2.28989e-5	0.0417893	0.00373083
chr7	152154737	152154835	3678408	0	-	0.438776	(0.408,0.44]	chr7	341402	4	EXON_MRNA	EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	KMT2C	ENSG00000055609.21	ENST00000360104.8:ENST00000262189.11:ENST00000418061.2:ENST00000680877.1:ENST00000424877.6:ENST00000679560.1:ENST00000682040.1:ENST00000683120.1:ENST00000681923.1:ENST00000679393.1:ENST00000683200.1:ENST00000680029.1:ENST00000683337.1:ENST00000683178.1:ENST00000683502.1:ENST00000684261.1:ENST00000682283.1:ENST00000473186.5:ENST00000684649.1:ENST00000679882.1:ENST00000684069.1:ENST00000485241.2:ENST00000684330.1:ENST00000683886.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	150	2	2.70492	3.069575	3.43423	5.24714e-4	1.43682e-5	0.0210958	0.00284044
chr1	1256335	1256413	359009	0	-	0.615385	(0.57,1]	chr1	41434	1	SS3_PROX	SS3_PROX:INTRON	UBE2J2	ENSG00000160087.21	ENST00000450390.6:ENST00000349431.11:ENST00000347370.6:ENST00000400929.6:ENST00000464036.5:ENST00000360466.6:ENST00000400930.8:ENST00000473215.5:ENST00000435198.5:ENST00000509720.5:ENST00000491779.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	44	2	2.37366	3.06951	3.76536	0.00373392	1.35835e-4	0.0535844	0.0100405
chr1	96813901	96814001	168882	0	+	0.3	(0.28,0.32]	chr1	18274	6	UTR3	UTR3:EXON_MRNA	PTBP2	ENSG00000117569.19	ENST00000675735.1:ENST00000609116.5:ENST00000674951.1:ENST00000675080.1:ENST00000426398.3:ENST00000370197.5:ENST00000370198.5:ENST00000676292.1:ENST00000675401.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	66	2	2.45545	3.069495	3.68354	0.0438092	5.5135e-4	0.14901	0.0213455
chr9	85977766	85977856	4149303	0	+	0.3	(0.28,0.32]	chr9	378450	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NAA35	ENSG00000135040.16	ENST00000361671.10:ENST00000376040.2	protein_coding	protein_coding	protein_coding	protein_coding	2	66	2	2.45545	3.069495	3.68354	0.0438092	5.5135e-4	0.14901	0.0213455
chr16	21443499	21443598	6460750	0	-	0.535354	(0.515,0.57]	chr16	623226	29	INTRON	INTRON	NPIPB3	ENSG00000169246.16	ENST00000545358.5:ENST00000543368.1:ENST00000544154.1	protein_coding	retained_intron	protein_coding	retained_intron:processed_transcript	9	161	2	3.02203	3.06944	3.11685	3.41795e-5	1.66254e-5	0.00493498	0.00307962
chr10	68518416	68518515	4640193	0	-	0.282828	(0.28,0.32]	chr10	426805	3	INTRON	INTRON	SLC25A16	ENSG00000122912.15	ENST00000609923.6:ENST00000493963.5:ENST00000491102.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	103	2	2.35314	3.069245	3.78535	0.00539714	6.21154e-4	0.066545000000000007	0.0229151
chr1	52447366	52447466	457481	0	-	0.53	(0.515,0.57]	chr1	54977	3	INTRON	INTRON	TUT4	ENSG00000134744.14	ENST00000371544.7:ENST00000257177.9:ENST00000469810.1:ENST00000528642.5:ENST00000497120.1:ENST00000484723.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	22	2	2.23915	3.068855	3.89856	0.0596178	0.0280943	0.16883600000000001	0.137011
chr1	155851280	155851380	564391	0	-	0.53	(0.515,0.57]	chr1	67384	180	INTRON	INTRON	GON4L	ENSG00000116580.20	ENST00000368331.6:ENST00000615926.4:ENST00000437809.5:ENST00000271883.9:ENST00000361040.9:ENST00000622608.2:ENST00000471341.5:ENST00000468867.1:ENST00000488251.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	22	2	2.23915	3.068855	3.89856	0.0596178	0.0280943	0.16883600000000001	0.137011
chr1	206593021	206593118	624658	0	-	0.525773	(0.515,0.57]	chr1	74359	8	INTRON	INTRON	EIF2D	ENSG00000143486.16	ENST00000472709.6:ENST00000271764.7:ENST00000367114.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	22	2	2.23915	3.068855	3.89856	0.0596178	0.0280943	0.16883600000000001	0.137011
chr12	132575348	132575443	5251665	0	+	0.515789	(0.515,0.57]	chr12	499512	4	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1:ENST00000542306.5:ENST00000537804.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	22	2	2.23915	3.068855	3.89856	0.0596178	0.0280943	0.16883600000000001	0.137011
chr17	1395333	1395433	6699560	0	-	0.52	(0.515,0.57]	chr17	655552	252	INTRON	INTRON	YWHAE	ENSG00000108953.17	ENST00000264335.13:ENST00000571732.5:ENST00000573026.1:ENST00000573196.5:ENST00000575977.1:ENST00000469398.5:ENST00000486241.1:ENST00000489287.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	22	2	2.23915	3.068855	3.89856	0.0596178	0.0280943	0.16883600000000001	0.137011
chr19	315142	315242	7109307	0	-	0.54	(0.515,0.57]	chr19	713786	11	INTRON	INTRON	MIER2	ENSG00000105556.12	ENST00000264819.7	protein_coding	protein_coding	protein_coding	protein_coding	1	22	2	2.23915	3.068855	3.89856	0.0596178	0.0280943	0.16883600000000001	0.137011
chr19	34180034	34180134	7050878	0	+	0.53	(0.515,0.57]	chr19	703187	69	INTRON	INTRON	LSM14A	ENSG00000257103.9	ENST00000544216.8:ENST00000589878.5:ENST00000540746.6:ENST00000433627.9:ENST00000586157.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	22	2	2.23915	3.068855	3.89856	0.0596178	0.0280943	0.16883600000000001	0.137011
chr19	53086621	53086721	7210399	0	-	0.55	(0.515,0.57]	chr19	731884	3	SS3_PROX	SS3_PROX:INTRON	ZNF160	ENSG00000170949.18	ENST00000599056.5:ENST00000418871.5:ENST00000429604.5:ENST00000683776.1:ENST00000599247.5:ENST00000355147.9:ENST00000597112.5:ENST00000602095.5:ENST00000596966.5:ENST00000594760.1:ENST00000600924.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	22	2	2.23915	3.068855	3.89856	0.0596178	0.0280943	0.16883600000000001	0.137011
chr2	128116643	128116743	862733	0	+	0.52	(0.515,0.57]	chr2	96704	3	SS5_PROX	SS5_PROX:INTRON	UGGT1	ENSG00000136731.13	ENST00000259253.11:ENST00000438277.5:ENST00000376723.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	22	2	2.23915	3.068855	3.89856	0.0596178	0.0280943	0.16883600000000001	0.137011
chr3	32566112	32566212	1650074	0	-	0.57	(0.515,0.57]	chr3	169158	1	SS5_PROX	SS5_PROX:INTRON	DYNC1LI1	ENSG00000144635.9	ENST00000273130.9:ENST00000481915.5:ENST00000432458.6:ENST00000413350.5:ENST00000424991.1:ENST00000475193.1:ENST00000474077.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	22	2	2.23915	3.068855	3.89856	0.0596178	0.0280943	0.16883600000000001	0.137011
chr6	106660198	106660297	2931436	0	+	0.545455	(0.515,0.57]	chr6	276172	41	INTRON	INTRON	QRSL1	ENSG00000130348.11	ENST00000369046.8	protein_coding	protein_coding	protein_coding	protein_coding	1	22	2	2.23915	3.068855	3.89856	0.0596178	0.0280943	0.16883600000000001	0.137011
chrX	153454876	153454964	7910239	0	-	0.534091	(0.515,0.57]	chrX	804964	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	HAUS7	ENSG00000213397.12	ENST00000370211.10:ENST00000484394.5:ENST00000435662.1:ENST00000460898.5:ENST00000437046.6:ENST00000491286.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	22	2	2.23915	3.068855	3.89856	0.0596178	0.0280943	0.16883600000000001	0.137011
chr2	190896667	190896767	959641	0	+	0.43	(0.408,0.44]	chr2	104167	2	INTRON	INTRON	GLS	ENSG00000115419.13	ENST00000320717.8:ENST00000338435.8:ENST00000469774.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	55	2	1.5375	3.068645	4.59979	0.0261451	0.0109537	0.133676	0.0873034
chr3	129399299	129399397	1815520	0	-	0.469388	(0.44,0.476]	chr3	182525	4	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	RPL32P3	ENSG00000251474.7	ENST00000510078.5:ENST00000687239.1:ENST00000514355.5:ENST00000515866.5:ENST00000499631.2:ENST00000506593.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	11	229	2	3.02626	3.068505	3.11075	2.51462e-5	1.0564e-5	0.00413384	0.00237296
chr9	4730288	4730387	4228820	0	-	0.272727	[0,0.28]	chr9	388786	73	INTRON	INTRON	AK3	ENSG00000147853.17	ENST00000381809.8:ENST00000611749.4:ENST00000359883.6:ENST00000447596.4	protein_coding	protein_coding	protein_coding	protein_coding	2	39	2	1.84147	3.068415	4.29536	0.0610416	0.0590175	0.193277	0.167915
chr1	12617731	12617826	379543	0	-	0.431579	(0.408,0.44]	chr1	44555	5	UTR5	UTR5:EXON_MRNA	DHRS3	ENSG00000162496.9	ENST00000616661.5	protein_coding	protein_coding	protein_coding	protein_coding	13	254	2	2.47005	3.06839	3.66673	1.91949e-4	6.91923e-7	0.0127058	4.6078e-4
chr5	149494866	149494966	2750496	0	-	0.34	(0.32,0.35]	chr5	258992	20	UTR3	UTR3:EXON_MRNA	CSNK1A1:ENSG00000230551	ENSG00000113712.19:ENSG00000230551.4	ENST00000261798.10:ENST00000377843.8:ENST00000657001.1:ENST00000499521.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron	4	106	2	3.04809	3.068365	3.08864	0.00120984	6.64579e-4	0.0317954	0.0233423
chr2	27583354	27583425	717934	0	+	0.380282	(0.378,0.408]	chr2	83346	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ZNF512	ENSG00000243943.10	ENST00000413371.6:ENST00000416005.6:ENST00000556601.5:ENST00000379717.5:ENST00000355467.6:ENST00000494548.1:ENST00000461705.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	137	2	2.66588	3.068345	3.47081	0.00156732	1.21482e-5	0.0360728	0.00259033
chr7	127808073	127808172	3403971	0	+	0.40404	(0.378,0.408]	chr7	318140	1	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000468166.5:ENST00000465900.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	128	2	2.31091	3.06833	3.82575	5.71091e-4	3.23711e-4	0.0217398	0.0165891
chr12	122105260	122105360	5240127	0	+	0.29	(0.28,0.32]	chr12	497496	256	INTRON	INTRON	MLXIP	ENSG00000175727.14	ENST00000319080.12	protein_coding	protein_coding	protein_coding	protein_coding	2	63	2	2.96187	3.0682	3.17453	0.0114995	0.00429297	0.0889104	0.0599065
chr1	1825799	1825899	362185	0	-	0.5	(0.476,0.515]	chr1	42296	3	SS3_PROX	SS3_PROX:INTRON	GNB1	ENSG00000078369.18	ENST00000610897.4:ENST00000615252.4:ENST00000378609.9:ENST00000439272.6:ENST00000434686.6:ENST00000437146.1:ENST00000472614.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	108	2	3.05958	3.06815	3.07672	8.34691e-4	1.29125e-4	0.0266389	0.00979735
chr3	197114929	197115029	1901651	0	-	0.41	(0.408,0.44]	chr3	190558	96	INTRON	INTRON	DLG1	ENSG00000075711.21	ENST00000667157.1:ENST00000346964.6:ENST00000656428.1:ENST00000663148.1:ENST00000655488.1:ENST00000357674.9:ENST00000671185.1:ENST00000658701.1:ENST00000667104.1:ENST00000661336.1:ENST00000669565.1:ENST00000670455.1:ENST00000656087.1:ENST00000670366.1:ENST00000653583.1:ENST00000653795.1:ENST00000671246.1:ENST00000661453.1:ENST00000665728.1:ENST00000664564.1:ENST00000653331.1:ENST00000660432.1:ENST00000660898.1:ENST00000657381.1:ENST00000659221.1:ENST00000654737.1:ENST00000669332.1:ENST00000659716.1:ENST00000660553.1:ENST00000664991.1:ENST00000419354.5:ENST00000661440.1:ENST00000667971.1:ENST00000670935.1:ENST00000668578.1:ENST00000666007.1:ENST00000661229.1:ENST00000660237.1:ENST00000657098.1:ENST00000661013.1:ENST00000436682.6:ENST00000452595.5:ENST00000662727.1:ENST00000422288.6:ENST00000448528.6:ENST00000443183.5:ENST00000656944.1:ENST00000392382.6:ENST00000450955.5:ENST00000658155.1:ENST00000669714.1:ENST00000654733.1:ENST00000469073.2:ENST00000419227.5:ENST00000392381.7:ENST00000471733.5:ENST00000419553.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	68	2	2.64829	3.06811	3.48793	0.00400062	0.00130904	0.057767	0.0331539
chr18	9201827	9201924	6869586	0	+	0.505155	(0.476,0.515]	chr18	680581	8	INTRON	INTRON	ANKRD12	ENSG00000101745.17	ENST00000262126.9:ENST00000540578.6:ENST00000581635.5:ENST00000400020.7:ENST00000581758.1:ENST00000546007.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	179	2	2.78286	3.06804	3.35322	5.42047e-5	4.0817e-5	0.00603408	0.00540883
chr9	111902710	111902810	4184510	0	+	0.34	(0.32,0.35]	chr9	381684	50	INTRON	INTRON	UGCG	ENSG00000148154.10	ENST00000374279.4:ENST00000489355.1:ENST00000495085.1:ENST00000490110.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	163	2	2.10462	3.0680250000000004	4.03143	0.00571086	3.4169e-6	0.0657377	0.00120453
chr2	232743939	232744038	1037715	0	+	0.484848	(0.476,0.515]	chr2	110656	54	INTRON	INTRON	GIGYF2	ENSG00000204120.16	ENST00000629305.2:ENST00000428883.5:ENST00000409480.5:ENST00000456491.5:ENST00000373563.9:ENST00000409547.5:ENST00000430720.5:ENST00000425040.5:ENST00000421433.5:ENST00000423659.5:ENST00000409196.7:ENST00000409451.7:ENST00000463554.5:ENST00000440945.5:ENST00000429187.5:ENST00000424038.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	68	2	2.73564	3.067835	3.40003	0.00333144	0.00139193	0.0512081	0.0341261
chr11	86262775	86262874	4842180	0	+	0.474747	(0.44,0.476]	chr11	451765	48	INTRON	INTRON	EED	ENSG00000074266.22	ENST00000263360.11:ENST00000528180.5:ENST00000672825.1:ENST00000673233.2:ENST00000327320.8:ENST00000351625.10:ENST00000534595.1:ENST00000525244.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	92	2	2.38634	3.0677950000000003	3.74925	0.0018045	4.08974e-4	0.039301	0.0185763
chr6	147239869	147239969	2989064	0	+	0.34	(0.32,0.35]	chr6	280013	2	INTRON	INTRON	STXBP5	ENSG00000164506.15	ENST00000321680.11:ENST00000367481.7:ENST00000546097.5:ENST00000367480.7	protein_coding	protein_coding	protein_coding	protein_coding	25	595	2	2.78698	3.06777	3.34856	1.81125e-5	2.65685e-7	0.00346705	2.53335e-4
chr11	57498433	57498521	4953624	0	-	0.409091	(0.408,0.44]	chr11	465036	2	INTRON	INTRON	SLC43A1	ENSG00000149150.9	ENST00000278426.8:ENST00000528450.5:ENST00000525764.5:ENST00000533515.5:ENST00000530159.5:ENST00000533066.5:ENST00000524995.5:ENST00000534105.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	125	2	2.43321	3.067545	3.70188	0.0019051	1.79949e-5	0.0394485	0.00323573
chr5	88280730	88280830	2412180	0	+	0.4	(0.378,0.408]	chr5	232535	114	EXON_LNCRNA	EXON_LNCRNA:SS3_PROX:INTRON	TMEM161B-DT	ENSG00000247828.9	ENST00000504922.6:ENST00000661377.2:ENST00000658478.1:ENST00000501869.7:ENST00000688087.1:ENST00000654762.1:ENST00000666577.1:ENST00000658094.1:ENST00000661627.1:ENST00000663476.1:ENST00000669353.1:ENST00000688523.1:ENST00000664546.1:ENST00000688118.1:ENST00000663490.1:ENST00000689901.1:ENST00000653918.1:ENST00000668471.1:ENST00000659093.1:ENST00000504636.2:ENST00000666808.1:ENST00000671394.1:ENST00000662970.2:ENST00000661351.1:ENST00000688398.1:ENST00000660783.1:ENST00000670030.1:ENST00000664462.1:ENST00000659005.2:ENST00000670451.1:ENST00000670873.1:ENST00000501715.6:ENST00000657972.2:ENST00000658611.1:ENST00000692797.1:ENST00000504769.5:ENST00000653898.1:ENST00000667139.1:ENST00000684909.1:ENST00000656152.1:ENST00000659215.1:ENST00000669465.1:ENST00000659938.1:ENST00000507736.2:ENST00000667511.1:ENST00000665926.1:ENST00000513694.2:ENST00000693402.1:ENST00000510087.6:ENST00000506584.5:ENST00000669796.1:ENST00000512724.5:ENST00000668037.1:ENST00000657617.1:ENST00000686930.1:ENST00000667127.1:ENST00000685962.1	lncRNA	lncRNA	lncRNA	lncRNA	4	85	2	2.10212	3.06753	4.03294	0.0141232	6.52685e-5	0.0959618	0.00669119
chr16	23988890	23988990	6325291	0	+	0.33	(0.32,0.35]	chr16	605710	3	SS5_PROX	SS5_PROX:INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000498739.1:ENST00000647422.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	161	2	2.56582	3.0675049999999997	3.56919	4.56098e-4	1.10765e-4	0.0192963	0.00945003
chr7	143307404	143307501	3441490	0	+	0.402062	(0.378,0.408]	chr7	320950	25	UTR3	UTR3:EXON_MRNA	CASP2	ENSG00000106144.20	ENST00000619992.4:ENST00000310447.10	protein_coding	protein_coding	protein_coding	protein_coding	7	125	2	1.53546	3.0673950000000003	4.59933	0.0265688	5.77542e-6	0.134088	0.00179016
chr3	42616869	42616969	1406134	0	+	0.49	(0.476,0.515]	chr3	147655	58	INTRON	INTRON	NKTR	ENSG00000114857.19	ENST00000468735.6:ENST00000487466.5:ENST00000429888.5:ENST00000232978.13:ENST00000442970.5:ENST00000445842.1:ENST00000478488.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	50	2	2.9435	3.067345	3.19119	0.00929849	0.00325748	0.0817766	0.0524329
chr6	2897084	2897182	3047413	0	-	0.316327	(0.28,0.32]	chr6	283534	5	INTRON	INTRON	SERPINB9	ENSG00000170542.6	ENST00000380698.5	protein_coding	protein_coding	protein_coding	protein_coding	3	87	2	2.18092	3.067235	3.95355	0.0271832	1.55324e-4	0.123904	0.0106835
chr5	134846421	134846509	2491288	0	+	0.545455	(0.515,0.57]	chr5	238020	3	UTR5	UTR5:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DDX46:C5orf24	ENSG00000145833.16:ENSG00000181904.9	ENST00000507053.1:ENST00000338051.4:ENST00000394976.4:ENST00000504727.1:ENST00000435259.2:ENST00000508791.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	59	2	2.763	3.067125	3.37125	0.00257143	0.00136343	0.045134	0.0339121
chr16	74981010	74981110	6527255	0	-	0.51	(0.476,0.515]	chr16	632164	20	INTRON	INTRON	WDR59	ENSG00000103091.15	ENST00000262144.11:ENST00000616369.4:ENST00000536050.5:ENST00000568323.5:ENST00000562331.5:ENST00000564859.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	71	2	3.00035	3.06712	3.13389	0.00405473	0.00109036	0.0578376	0.0303873
chr18	12950172	12950270	6876178	0	+	0.530612	(0.515,0.57]	chr18	681271	10	INTRON	INTRON	SEH1L	ENSG00000085415.16	ENST00000592170.5:ENST00000262124.15:ENST00000399892.7:ENST00000585730.5:ENST00000589446.5:ENST00000587761.1:ENST00000588251.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	44	2	2.98677	3.0670349999999997	3.1473	0.00632549	0.00397184	0.0722266	0.0549214
chr13	32525948	32526048	5572724	0	-	0.38	(0.378,0.408]	chr13	532565	38	EXON_MRNA	EXON_MRNA:INTRON	N4BP2L2	ENSG00000244754.9	ENST00000357505.10:ENST00000399396.7:ENST00000504114.5:ENST00000446957.6:ENST00000674456.1:ENST00000674161.1:ENST00000674422.1:ENST00000674272.1:ENST00000674452.1:ENST00000674384.1:ENST00000505213.5:ENST00000674219.1:ENST00000267068.5:ENST00000674349.1:ENST00000674428.1:ENST00000503814.2:ENST00000674465.1:ENST00000674421.1:ENST00000674180.1:ENST00000674297.1:ENST00000674480.1:ENST00000674377.1:ENST00000674437.1:ENST00000674327.1:ENST00000674399.1:ENST00000674196.1:ENST00000674163.1:ENST00000511143.5:ENST00000674484.1:ENST00000475731.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	13	280	2	2.95423	3.066945	3.17966	4.17433e-5	2.07241e-6	0.00548104	8.88027e-4
chr22	19337228	19337328	7553455	0	-	0.23	[0,0.28]	chr22	772184	53	INTRON	INTRON	HIRA	ENSG00000100084.14	ENST00000263208.5:ENST00000340170.8	protein_coding	protein_coding	protein_coding	protein_coding	4	117	2	2.37401	3.066945	3.75988	0.00568456	9.5295e-4	0.0678837	0.0282335
chr12	122401941	122402041	5441475	0	-	0.4	(0.378,0.408]	chr12	520453	13	INTRON	INTRON	CLIP1	ENSG00000130779.22	ENST00000361654.8:ENST00000358808.6:ENST00000620786.5:ENST00000537178.5:ENST00000539080.1	protein_coding	protein_coding	protein_coding	protein_coding	2	31	2	1.81685	3.0669199999999996	4.31699	0.0597868	0.0250408	0.189982	0.12011
chr13	95237820	95237920	5639237	0	-	0.38	(0.378,0.408]	chr13	537157	26	INTRON	INTRON	ABCC4	ENSG00000125257.16	ENST00000645237.2:ENST00000643051.1:ENST00000643842.1:ENST00000646439.1:ENST00000643816.1:ENST00000536256.3:ENST00000643556.1:ENST00000629385.1:ENST00000642524.1:ENST00000645532.1:ENST00000644471.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	31	2	1.81685	3.0669199999999996	4.31699	0.0597868	0.0250408	0.189982	0.12011
chr17	59745029	59745129	6642772	0	+	0.38	(0.378,0.408]	chr17	648739	57	INTRON	INTRON	VMP1	ENSG00000062716.13	ENST00000593168.5:ENST00000586245.5:ENST00000585847.5:ENST00000262291.9:ENST00000587945.1:ENST00000589823.6:ENST00000592619.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	31	2	1.81685	3.0669199999999996	4.31699	0.0597868	0.0250408	0.189982	0.12011
chr18	80143540	80143640	6938437	0	+	0.4	(0.378,0.408]	chr18	686214	33	INTRON	INTRON	ADNP2	ENSG00000101544.9	ENST00000561195.1	protein_coding	protein_coding	protein_coding	protein_coding	2	31	2	1.81685	3.0669199999999996	4.31699	0.0597868	0.0250408	0.189982	0.12011
chr2	148025064	148025164	886787	0	+	0.39	(0.378,0.408]	chr2	98612	2	EXON_LNCRNA	EXON_LNCRNA:INTRON	MBD5	ENSG00000204406.14	ENST00000407073.5:ENST00000488372.5:ENST00000496158.5:ENST00000642680.2:ENST00000478190.3:ENST00000638130.1:ENST00000637308.1:ENST00000473478.5:ENST00000635796.1:ENST00000637997.1:ENST00000470063.5:ENST00000638043.2:ENST00000469438.1:ENST00000638090.1:ENST00000637445.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	31	2	1.81685	3.0669199999999996	4.31699	0.0597868	0.0250408	0.189982	0.12011
chr4	15605626	15605722	2114355	0	-	0.395833	(0.378,0.408]	chr4	208813	14	UTR3	UTR3:EXON_MRNA	FBXL5	ENSG00000118564.15	ENST00000341285.8:ENST00000412094.6:ENST00000511441.5:ENST00000513163.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	31	2	1.81685	3.0669199999999996	4.31699	0.0597868	0.0250408	0.189982	0.12011
chr7	144262702	144262802	3443490	0	+	0.4	(0.378,0.408]	chr7	321149	77	INTRON	INTRON	ARHGEF35-AS1	ENSG00000244198.7	ENST00000460955.5	lncRNA	lncRNA	lncRNA	lncRNA	2	31	2	1.81685	3.0669199999999996	4.31699	0.0597868	0.0250408	0.189982	0.12011
chrX	130139101	130139201	7887760	0	-	0.4	(0.378,0.408]	chrX	803119	4	SS3_PROX	SS3_PROX:INTRON	AIFM1	ENSG00000156709.15	ENST00000675050.1:ENST00000676229.1:ENST00000674957.1:ENST00000674546.1:ENST00000287295.8:ENST00000675092.1:ENST00000675427.1:ENST00000675857.1:ENST00000346424.6:ENST00000535724.6:ENST00000527892.5:ENST00000416073.7:ENST00000676328.1:ENST00000676436.1:ENST00000674997.1:ENST00000319908.8:ENST00000676048.1:ENST00000675240.1:ENST00000675111.1:ENST00000674555.1:ENST00000675037.1:ENST00000674722.1:ENST00000533719.2:ENST00000676144.1:ENST00000675774.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	31	2	1.81685	3.0669199999999996	4.31699	0.0597868	0.0250408	0.189982	0.12011
chr18	36038017	36038117	6963248	0	-	0.36	(0.35,0.378]	chr18	689069	38	INTRON	INTRON	RPRD1A	ENSG00000141425.18	ENST00000399022.9:ENST00000590898.5:ENST00000357384.8:ENST00000588737.5:ENST00000589050.1:ENST00000592674.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:nonsense_mediated_decay	3	73	2	2.76192	3.066835	3.37175	0.00265021	0.00236696	0.0474328	0.043778
chr7	91981557	91981657	3351428	0	+	0.26	[0,0.28]	chr7	312210	2	INTRON	INTRON	AKAP9	ENSG00000127914.19	ENST00000680534.1:ENST00000680513.1:ENST00000680072.1:ENST00000679821.1:ENST00000679554.1:ENST00000356239.8:ENST00000679521.1:ENST00000680181.1:ENST00000681722.1:ENST00000680766.1:ENST00000679448.1:ENST00000681412.1:ENST00000680047.1:ENST00000679474.1:ENST00000680952.1:ENST00000679457.1:ENST00000679722.1:ENST00000680074.1:ENST00000493453.1:ENST00000394564.5:ENST00000674381.2:ENST00000359028.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	131	2	2.86095	3.06679	3.27263	0.00369266	4.10633e-4	0.0535094	0.0181365
chr13	111266010	111266110	5545830	0	+	0.47	(0.44,0.476]	chr13	529819	3	SS5_PROX	SS5_PROX:INTRON	ARHGEF7	ENSG00000102606.19	ENST00000317133.9:ENST00000375739.6:ENST00000375741.6:ENST00000646102.2:ENST00000469877.5:ENST00000466143.5:ENST00000218789.9:ENST00000375736.8:ENST00000426073.6:ENST00000375723.5:ENST00000483189.1:ENST00000478679.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	67	2	2.78129	3.0667799999999996	3.35227	0.00229634	0.0022005699999999998	0.0439319	0.0417893
chr11	71877610	71877709	4975490	0	-	0.353535	(0.35,0.378]	chr11	469924	114	INTRON	INTRON	XNDC1N	ENSG00000254469.10	ENST00000679695.1:ENST00000532852.5	protein_coding	protein_coding	protein_coding	protein_coding	2	40	2	2.19034	3.066625	3.94291	0.0374229	0.023941	0.155878	0.119443
chr8	23533714	23533813	3715145	0	+	0.414141	(0.408,0.44]	chr8	345217	19	INTRON	INTRON	SLC25A37	ENSG00000147454.14	ENST00000519973.6:ENST00000290075.10:ENST00000417331.6:ENST00000518881.5:ENST00000520654.1:ENST00000523930.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	14	289	2	2.95154	3.06645	3.18136	8.92979e-6	5.82189e-6	0.00230036	0.00169113
chr16	8809808	8809906	6284779	0	+	0.530612	(0.515,0.57]	chr16	601833	24	EXON_MRNA	EXON_MRNA:INTRON	PMM2	ENSG00000140650.13	ENST00000566983.5:ENST00000682008.1:ENST00000683435.1:ENST00000683094.1:ENST00000566604.5:ENST00000570134.5:ENST00000268261.9:ENST00000683274.1:ENST00000682393.1:ENST00000566540.5:ENST00000562318.5:ENST00000565896.5:ENST00000568602.5:ENST00000570076.5:ENST00000569958.5:ENST00000565221.5:ENST00000564069.1:ENST00000567697.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	96	2	2.09303	3.0664249999999997	4.03982	0.00230048	6.5518e-5	0.0439974	0.00715707
chr14	94080525	94080618	5964519	0	-	0.462366	(0.44,0.476]	chr14	566417	4	INTRON	INTRON	DDX24	ENSG00000089737.18	ENST00000621632.5:ENST00000555762.1:ENST00000544005.5:ENST00000330836.9:ENST00000555054.1:ENST00000555324.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	25	2	2.29842	3.0664100000000003	3.8344	0.0552483	0.041276	0.165463	0.161534
chr17	47092540	47092640	6788566	0	-	0.47	(0.44,0.476]	chr17	669501	98	INTRON	INTRON	ENSG00000262879	ENSG00000262879.6	ENST00000668245.1:ENST00000573341.6:ENST00000572864.5:ENST00000576938.1:ENST00000574741.1	lncRNA	lncRNA	lncRNA	lncRNA	1	25	2	2.29842	3.0664100000000003	3.8344	0.0552483	0.041276	0.165463	0.161534
chr2	73943319	73943419	811614	0	+	0.46	(0.44,0.476]	chr2	90798	39	INTRON	INTRON	DGUOK	ENSG00000114956.20	ENST00000348222.3:ENST00000629438.2:ENST00000418996.5:ENST00000264093.9:ENST00000462551.1:ENST00000489796.5:ENST00000462685.1:ENST00000493055.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	25	2	2.29842	3.0664100000000003	3.8344	0.0552483	0.041276	0.165463	0.161534
chr6	4804602	4804702	2791144	0	+	0.47	(0.44,0.476]	chr6	263598	274	INTRON	INTRON	CDYL	ENSG00000153046.18	ENST00000328908.9:ENST00000491864.1:ENST00000440139.5:ENST00000483019.1:ENST00000397588.8:ENST00000472453.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	25	2	2.29842	3.0664100000000003	3.8344	0.0552483	0.041276	0.165463	0.161534
chr9	112324453	112324552	4317869	0	-	0.474747	(0.44,0.476]	chr9	397079	262	INTRON	INTRON	PTBP3	ENSG00000119314.16	ENST00000334318.10:ENST00000458258.5:ENST00000374257.6:ENST00000374255.6:ENST00000343327.6:ENST00000487997.1:ENST00000210227.4:ENST00000450374.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	25	2	2.29842	3.0664100000000003	3.8344	0.0552483	0.041276	0.165463	0.161534
chr9	123896409	123896509	4345689	0	-	0.36	(0.35,0.378]	chr9	399137	170	INTRON	INTRON	DENND1A	ENSG00000119522.17	ENST00000373624.6:ENST00000394215.7:ENST00000373620.7:ENST00000373618.1	protein_coding	protein_coding	protein_coding	protein_coding	3	39	2	1.65083	3.066335	4.48184	0.0521072	0.0191702	0.177022	0.108861
chr4	129042994	129043094	2240781	0	-	0.48	(0.476,0.515]	chr4	219307	2	SS5_PROX	SS5_PROX:INTRON	SCLT1	ENSG00000151466.12	ENST00000651532.1:ENST00000281142.10:ENST00000503215.5:ENST00000439369.6:ENST00000506368.5:ENST00000511426.5:ENST00000503401.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	50	2	2.8863	3.0663	3.2463	0.0111679	0.00262374	0.0877435	0.0470772
chr7	99041336	99041430	3582101	0	-	0.5	(0.476,0.515]	chr7	333628	4	INTRON	INTRON	SMURF1	ENSG00000198742.10	ENST00000361368.7:ENST00000361125.1	protein_coding	protein_coding	protein_coding	protein_coding	2	50	2	2.8863	3.0663	3.2463	0.0111679	0.00262374	0.0877435	0.0470772
chr1	50656827	50656927	449213	0	-	0.38	(0.378,0.408]	chr1	54229	9	INTRON	INTRON	FAF1	ENSG00000185104.21	ENST00000396153.7:ENST00000494400.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	26	2	2.30961	3.066275	3.82294	0.055088	0.044228	0.165463	0.162255
chr10	34677760	34677860	4598917	0	-	0.4	(0.378,0.408]	chr10	423718	1603	INTRON	INTRON	PARD3	ENSG00000148498.17	ENST00000545260.5:ENST00000545693.5:ENST00000346874.9:ENST00000350537.9:ENST00000374788.8:ENST00000374789.8:ENST00000374790.8:ENST00000374794.8:ENST00000696673.1:ENST00000374776.6:ENST00000340077.9:ENST00000374773.6	protein_coding	protein_coding	protein_coding	protein_coding	1	26	2	2.30961	3.066275	3.82294	0.055088	0.044228	0.165463	0.162255
chr15	37010039	37010139	6143155	0	-	0.39	(0.378,0.408]	chr15	584824	593	INTRON	INTRON	MEIS2	ENSG00000134138.20	ENST00000338564.9:ENST00000561208.6:ENST00000397624.7:ENST00000340545.9:ENST00000314177.12:ENST00000560570.5:ENST00000559085.5:ENST00000557796.6:ENST00000397620.6:ENST00000424352.6:ENST00000559561.5:ENST00000607277.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	26	2	2.30961	3.066275	3.82294	0.055088	0.044228	0.165463	0.162255
chr4	124709299	124709399	2234984	0	-	0.4	(0.378,0.408]	chr4	218984	300	INTRON	INTRON	ANKRD50	ENSG00000151458.12	ENST00000504087.6:ENST00000515641.1	protein_coding	protein_coding	protein_coding	protein_coding	1	26	2	2.30961	3.066275	3.82294	0.055088	0.044228	0.165463	0.162255
chr6	20441676	20441776	2827847	0	+	0.4	(0.378,0.408]	chr6	265583	16	INTRON	INTRON	E2F3	ENSG00000112242.16	ENST00000346618.8:ENST00000535432.2	protein_coding	protein_coding	protein_coding	protein_coding	1	26	2	2.30961	3.066275	3.82294	0.055088	0.044228	0.165463	0.162255
chr6	20458062	20458162	2828011	0	+	0.39	(0.378,0.408]	chr6	265583	180	INTRON	INTRON	E2F3	ENSG00000112242.16	ENST00000346618.8:ENST00000535432.2	protein_coding	protein_coding	protein_coding	protein_coding	1	26	2	2.30961	3.066275	3.82294	0.055088	0.044228	0.165463	0.162255
chr9	128075874	128075974	4202508	0	+	0.38	(0.378,0.408]	chr9	383913	69	INTRON	INTRON	SLC25A25	ENSG00000148339.13	ENST00000373068.6:ENST00000373069.10	protein_coding	protein_coding	protein_coding	protein_coding	1	26	2	2.30961	3.066275	3.82294	0.055088	0.044228	0.165463	0.162255
chr1	15692996	15693096	34099	0	+	0.5	(0.476,0.515]	chr1	4144	80	INTRON	INTRON	PLEKHM2	ENSG00000116786.13	ENST00000375799.8:ENST00000375793.2:ENST00000462455.1:ENST00000642363.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	50	2	2.99852	3.066205	3.13389	0.0077575	0.00405473	0.0757402	0.0578376
chr1	54393070	54393170	463628	0	-	0.49	(0.476,0.515]	chr1	55784	364	INTRON	INTRON	SSBP3	ENSG00000157216.16	ENST00000610401.5:ENST00000357475.9:ENST00000371319.8:ENST00000417664.7:ENST00000533946.6:ENST00000371320.8:ENST00000525990.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	50	2	2.99852	3.066205	3.13389	0.0077575	0.00405473	0.0757402	0.0578376
chr1	201990523	201990622	292586	0	+	0.50505	(0.476,0.515]	chr1	33706	6	INTRON	INTRON	RNPEP	ENSG00000176393.11	ENST00000481780.5:ENST00000295640.9:ENST00000367286.7:ENST00000487116.5:ENST00000492587.5:ENST00000471105.5:ENST00000447312.5:ENST00000478617.5:ENST00000479726.5:ENST00000492849.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	50	2	2.99852	3.066205	3.13389	0.0077575	0.00405473	0.0757402	0.0578376
chr1	19396887	19396987	388018	0	-	0.46	(0.44,0.476]	chr1	46371	109	INTRON	INTRON	CAPZB	ENSG00000077549.19	ENST00000264202.8:ENST00000264203.7:ENST00000375142.5:ENST00000482808.2:ENST00000674449.1:ENST00000674390.1:ENST00000375144.6:ENST00000674432.1:ENST00000433834.5:ENST00000674228.1:ENST00000459967.6:ENST00000489607.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	68	2	2.67282	3.066195	3.45957	0.00433875	0.00106385	0.0579868	0.0300133
chr1	101043216	101043316	175379	0	+	0.47	(0.44,0.476]	chr1	18988	162	INTRON	INTRON	ENSG00000233184	ENSG00000233184.8	ENST00000451213.2:ENST00000654574.2:ENST00000454721.7:ENST00000663958.1:ENST00000446527.6:ENST00000659528.2:ENST00000656224.2:ENST00000656060.1:ENST00000687560.1:ENST00000687494.1:ENST00000664684.1:ENST00000453011.5:ENST00000654544.1:ENST00000656047.1:ENST00000655226.1:ENST00000658370.1:ENST00000666646.1:ENST00000669687.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	3	68	2	3.05373	3.066175	3.07862	0.0060153	6.56725e-4	0.0674604	0.0232396
chr6	167899949	167900047	3035079	0	+	0.428571	(0.408,0.44]	chr6	282773	11	INTRON	INTRON	AFDN	ENSG00000130396.21	ENST00000683244.1:ENST00000351017.9:ENST00000344191.8:ENST00000392112.5:ENST00000392108.7:ENST00000400822.7:ENST00000447894.6:ENST00000366809.6:ENST00000366806.6:ENST00000423229.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	51	2	2.71911	3.06617	3.41323	0.0189489	0.00129989	0.108861	0.0333764
chr1	150576466	150576566	551054	0	-	0.36	(0.35,0.378]	chr1	64761	24	UTR3	UTR3:EXON_MRNA:INTRON	MCL1	ENSG00000143384.14	ENST00000678770.1:ENST00000678610.1:ENST00000464132.2:ENST00000620947.4:ENST00000369026.3:ENST00000676522.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	148	2	1.7746	3.066165	4.35773	0.00527719	2.66568e-5	0.0656295	0.00428463
chr13	99385724	99385822	5526305	0	+	0.387755	(0.378,0.408]	chr13	528296	5	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	UBAC2	ENSG00000134882.16	ENST00000403766.8:ENST00000376440.6:ENST00000494576.5:ENST00000460562.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	38	2	1.72045	3.06607	4.41169	0.0424671	0.0199606	0.161763	0.109608
chr1	10123651	10123749	20048	0	+	0.357143	(0.35,0.378]	chr1	1900	12	INTRON	INTRON	UBE4B	ENSG00000130939.20	ENST00000672724.1:ENST00000253251.12:ENST00000343090.11:ENST00000470736.1	protein_coding	protein_coding	protein_coding	protein_coding	2	33	2	2.04358	3.0658700000000003	4.08816	0.046021	0.0329533	0.149888	0.145171
chr1	155898700	155898799	564486	0	-	0.363636	(0.35,0.378]	chr1	67401	10	UTR3	UTR3:EXON_MRNA	RIT1	ENSG00000143622.11	ENST00000368323.8	protein_coding	protein_coding	protein_coding	protein_coding	2	33	2	2.04358	3.0658700000000003	4.08816	0.046021	0.0329533	0.149888	0.145171
chr13	28281779	28281879	5462281	0	+	0.55	(0.515,0.57]	chr13	523330	4	SS5_PROX	SS5_PROX:INTRON	PAN3	ENSG00000152520.14	ENST00000380958.8:ENST00000399613.1	protein_coding	protein_coding	protein_coding	protein_coding	3	58	2	2.87626	3.0658649999999996	3.25547	0.00261721	0.00136224	0.0455413	0.0339121
chr9	112245235	112245335	4317070	0	-	0.5	(0.476,0.515]	chr9	397042	25	INTRON	INTRON	PTBP3	ENSG00000119314.16	ENST00000334318.10:ENST00000458258.5:ENST00000374257.6:ENST00000374255.6:ENST00000343327.6	protein_coding	protein_coding	protein_coding	protein_coding	4	82	2	2.84089	3.0658149999999997	3.29074	0.00272563	4.67054e-4	0.0467523	0.0195793
chr10	87288004	87288102	4660837	0	-	0.418367	(0.408,0.44]	chr10	429441	34	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	NUTM2A-AS1	ENSG00000223482.9	ENST00000692417.1:ENST00000688214.1:ENST00000659257.1:ENST00000671543.1:ENST00000451940.6:ENST00000687947.1:ENST00000663644.1:ENST00000684884.1:ENST00000664664.1:ENST00000446751.6:ENST00000456104.5:ENST00000433530.7:ENST00000688257.1:ENST00000433920.5:ENST00000687925.1:ENST00000666515.2:ENST00000688926.1:ENST00000447424.6:ENST00000690598.1:ENST00000663113.1:ENST00000667520.2:ENST00000693252.1:ENST00000687827.1:ENST00000687141.1:ENST00000654503.2:ENST00000420424.1:ENST00000655272.2:ENST00000668676.1:ENST00000653080.1:ENST00000690287.1:ENST00000413722.6:ENST00000653238.1	lncRNA	lncRNA	lncRNA	lncRNA	2	51	2	3.02513	3.0657699999999997	3.10641	0.0059965	0.00555646	0.0700606	0.0648867
chr7	16669066	16669165	3286731	0	+	0.414141	(0.408,0.44]	chr7	305255	32	INTRON	INTRON	BZW2	ENSG00000136261.16	ENST00000415365.5:ENST00000630952.2:ENST00000433922.6:ENST00000437745.5:ENST00000432311.5:ENST00000436868.5:ENST00000258761.8:ENST00000405202.5:ENST00000480517.5:ENST00000446596.5:ENST00000438834.5:ENST00000430000.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	51	2	3.02513	3.0657699999999997	3.10641	0.0059965	0.00555646	0.0700606	0.0648867
chr19	1875169	1875269	7113952	0	-	0.35	(0.32,0.35]	chr19	714912	4	EXON_LNCRNA	EXON_LNCRNA	ENSG00000261526	ENSG00000261526.2	ENST00000565797.2	lncRNA	lncRNA	lncRNA	lncRNA	8	140	2	2.0259	3.06571	4.10552	0.00288146	1.19038e-4	0.0494641	0.0098845100000000009
chr19	19472638	19472715	7036022	0	+	0.441558	(0.44,0.476]	chr19	701467	4	EXON_LNCRNA	EXON_LNCRNA:INTRON	GATAD2A	ENSG00000167491.18	ENST00000360315.7:ENST00000609040.5:ENST00000417582.6:ENST00000683918.1:ENST00000432704.5:ENST00000404158.5:ENST00000429242.7:ENST00000358713.7:ENST00000444839.1:ENST00000418032.3:ENST00000473184.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	67	2	2.73781	3.065515	3.39322	0.00276493	0.00187283	0.04867	0.0390476
chr11	75405253	75405351	4831888	0	+	0.530612	(0.515,0.57]	chr11	450864	5	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPS3	ENSG00000149273.15	ENST00000531188.6:ENST00000528439.5:ENST00000530721.5:ENST00000422465.6:ENST00000532872.5:ENST00000278572.10:ENST00000527446.5:ENST00000534440.5:ENST00000526248.5:ENST00000525690.1:ENST00000525933.1:ENST00000530170.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	131	2	2.15	3.0654500000000002	3.9809	0.00172219	3.40188e-6	0.0383099	0.00131232
chr17	19112166	19112250	6740858	0	-	0.547619	(0.515,0.57]	chr17	661757	3	EXON_LNCRNA	EXON_LNCRNA	ENSG00000262202	ENSG00000262202.4	ENST00000573866.2	lncRNA	lncRNA	lncRNA	lncRNA	13	280	2	2.63844	3.065445	3.49245	4.34654e-4	7.15537e-8	0.0187509	1.127e-4
chr4	146756	146855	1905868	0	+	0.323232	(0.32,0.35]	chr4	191032	149	INTRON	INTRON	ZNF718	ENSG00000250312.8	ENST00000642529.1:ENST00000510175.6:ENST00000609714.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	58	2	2.89743	3.0653699999999997	3.23331	0.0127608	0.00315414	0.0926667	0.0515261
chr15	64546246	64546346	6044946	0	+	0.52	(0.515,0.57]	chr15	575696	433	INTRON	INTRON	ZNF609	ENSG00000180357.10	ENST00000326648.5:ENST00000558680.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	119	2	2.84903	3.06524	3.28145	2.1933e-4	5.30851e-5	0.0135522	0.00594346
chr15	92900551	92900642	6103688	0	+	0.472527	(0.44,0.476]	chr15	581380	5	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	ENSG00000279765:CHD2	ENSG00000279765.3:ENSG00000173575.22	ENST00000629685.2:ENST00000630790.1:ENST00000626874.2:ENST00000627622.1:ENST00000394196.9:ENST00000635856.1:ENST00000420239.7:ENST00000628375.2:ENST00000629346.2:ENST00000625990.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	26	489	2	2.75327	3.0652150000000002	3.37716	1.91782e-6	7.84952e-7	8.42956e-4	5.43864e-4
chr12	116208060	116208160	5424852	0	-	0.47	(0.44,0.476]	chr12	518271	269	INTRON	INTRON	MED13L	ENSG00000123066.9	ENST00000281928.9:ENST00000650226.1:ENST00000548743.2:ENST00000647567.1:ENST00000551197.2	protein_coding	protein_coding	protein_coding	protein_coding	5	92	2	2.44562	3.065175	3.68473	0.00135452	5.47507e-4	0.0339121	0.0215463
chr12	88105288	88105387	5379237	0	-	0.333333	(0.32,0.35]	chr12	513097	24	EXON_MRNA	EXON_MRNA:INTRON	CEP290	ENSG00000198707.17	ENST00000674971.1:ENST00000672414.2:ENST00000673058.2:ENST00000675833.1:ENST00000675476.1:ENST00000309041.12:ENST00000675794.1:ENST00000676074.1:ENST00000675408.1:ENST00000675230.1:ENST00000675628.1:ENST00000552810.6:ENST00000676363.1:ENST00000547691.8:ENST00000676448.1:ENST00000604024.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	41	2	1.67393	3.06511	4.45629	0.0496128	0.0246089	0.174685	0.12011
chr6	24704958	24705056	3070579	0	-	0.346939	(0.32,0.35]	chr6	285341	2	UTR3	UTR3:EXON_MRNA	C6orf62	ENSG00000112308.13	ENST00000378119.9	protein_coding	protein_coding	protein_coding	protein_coding	3	41	2	1.67393	3.06511	4.45629	0.0496128	0.0246089	0.174685	0.12011
chr8	144460991	144461090	4086406	0	-	0.606061	(0.57,1]	chr8	372102	32	INTRON	INTRON	CYHR1	ENSG00000187954.13	ENST00000438911.6:ENST00000530374.6:ENST00000526887.5:ENST00000528558.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	28	2	2.99729	3.064915	3.13254	0.00538023	0.00310655	0.0642754	0.0512344
chr1	19912645	19912745	41050	0	+	0.43	(0.408,0.44]	chr1	4832	50	UTR3	UTR3:EXON_MRNA	OTUD3	ENSG00000169914.6	ENST00000375120.4	protein_coding	protein_coding	protein_coding	protein_coding	2	31	2	2.00768	3.064775	4.12187	0.035843	0.0354689	0.152216	0.137535
chr11	78351750	78351850	4999726	0	-	0.42	(0.408,0.44]	chr11	472466	100	INTRON	INTRON	GAB2	ENSG00000033327.13	ENST00000361507.5:ENST00000526030.1:ENST00000528886.5:ENST00000530915.1:ENST00000534823.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	31	2	2.00768	3.064775	4.12187	0.035843	0.0354689	0.152216	0.137535
chr16	47584899	47584998	6344548	0	+	0.414141	(0.408,0.44]	chr16	608903	42	INTRON	INTRON	PHKB	ENSG00000102893.17	ENST00000566044.5:ENST00000299167.12:ENST00000696809.1:ENST00000323584.10:ENST00000567402.5:ENST00000570047.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	31	2	2.00768	3.064775	4.12187	0.035843	0.0354689	0.152216	0.137535
chr8	67169427	67169526	3777731	0	+	0.434343	(0.408,0.44]	chr8	350439	32	INTRON	INTRON	CSPP1	ENSG00000104218.16	ENST00000676113.1:ENST00000675306.2:ENST00000262210.11:ENST00000678017.1:ENST00000675869.1:ENST00000678542.1:ENST00000677619.1:ENST00000676605.1:ENST00000676471.1:ENST00000677256.1:ENST00000676847.1:ENST00000677009.1:ENST00000676317.1:ENST00000677592.1:ENST00000676573.1:ENST00000678318.1:ENST00000677473.1:ENST00000674993.1:ENST00000679226.1:ENST00000676882.1:ENST00000675955.1:ENST00000677430.1:ENST00000678616.1:ENST00000679112.1:ENST00000678645.1:ENST00000677845.1:ENST00000676858.1:ENST00000678747.1:ENST00000519668.1:ENST00000677855.1:ENST00000677052.1:ENST00000679274.1:ENST00000678635.1:ENST00000676804.1:ENST00000679295.1:ENST00000677964.1:ENST00000676968.1:ENST00000678895.1:ENST00000678723.1:ENST00000677131.1:ENST00000521324.3:ENST00000675990.1:ENST00000521168.5:ENST00000677697.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	31	2	2.00768	3.064775	4.12187	0.035843	0.0354689	0.152216	0.137535
chr7	10580368	10580468	3482583	0	-	0.37	(0.35,0.378]	chr7	325772	184	INTRON	INTRON	MGC4859	ENSG00000283117.1	ENST00000634803.1	lncRNA	lncRNA	lncRNA	lncRNA	3	73	2	2.72093	3.0647200000000003	3.40851	0.00314173	0.00205747	0.0514466	0.0409869
chr1	27246807	27246907	53139	0	+	0.49	(0.476,0.515]	chr1	6792	115	INTRON	INTRON	WDTC1	ENSG00000142784.16	ENST00000319394.8:ENST00000361771.7	protein_coding	protein_coding	protein_coding	protein_coding	2	31	2	1.99341	3.064635	4.13586	0.037389	0.031846	0.155878	0.13151
chr4	94496660	94496759	1998832	0	+	0.494949	(0.476,0.515]	chr4	199554	72	INTRON	INTRON	PDLIM5	ENSG00000163110.15	ENST00000437932.5:ENST00000615540.4:ENST00000318007.9:ENST00000380180.7:ENST00000514830.5:ENST00000509333.5:ENST00000503974.5:ENST00000317968.9:ENST00000627587.2:ENST00000542407.5:ENST00000514743.5:ENST00000508216.5:ENST00000511767.3:ENST00000510099.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	31	2	1.99341	3.064635	4.13586	0.037389	0.031846	0.155878	0.13151
chr9	91353988	91354087	4281145	0	-	0.515152	(0.476,0.515]	chr9	393807	104	INTRON	INTRON	AUH	ENSG00000148090.12	ENST00000303617.5:ENST00000375731.9:ENST00000478465.5:ENST00000475023.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	90	2	3.04097	3.064635	3.0883	7.31567e-4	7.0601e-4	0.0248722	0.0241881
chr16	89482746	89482845	6543524	0	-	0.585859	(0.57,1]	chr16	634281	511	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	106	2	2.87603	3.064565	3.2531	1.20654e-5	5.37406e-6	0.00257826	0.00172277
chr4	78782811	78782911	1981449	0	+	0.41	(0.408,0.44]	chr4	198463	57	INTRON	INTRON	BMP2K	ENSG00000138756.19	ENST00000389010.7:ENST00000502613.3:ENST00000502871.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	114	2	1.80815	3.06454	4.32093	0.0109379	1.15245e-5	0.0873034	0.00250519
chr9	100331068	100331168	4308952	0	-	0.44	(0.408,0.44]	chr9	395874	5	INTRON	INTRON	TEX10	ENSG00000136891.14	ENST00000535814.5:ENST00000374902.9:ENST00000429235.1	protein_coding	protein_coding	protein_coding	protein_coding	3	68	2	2.45003	3.064445	3.67886	0.00990006	3.86173e-4	0.0838372	0.017761
chr4	1881217	1881316	1910668	0	+	0.424242	(0.408,0.44]	chr4	191707	93	INTRON	INTRON	NSD2	ENSG00000109685.19	ENST00000508803.6:ENST00000507820.5:ENST00000508355.5:ENST00000514045.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	109	2	2.67325	3.06433	3.45541	0.00143252	7.81911e-5	0.0340925	0.00736696
chr20	35680236	35680336	7335913	0	-	0.52	(0.515,0.57]	chr20	747332	1	SS5_PROX	SS5_PROX:INTRON	NFS1	ENSG00000244005.13	ENST00000374092.9:ENST00000374085.5:ENST00000397425.5:ENST00000440385.5:ENST00000541387.5:ENST00000489163.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	75	2	1.94493	3.0643000000000002	4.18367	0.0204583	2.93017e-5	0.122204	0.00449807
chr6	17624260	17624360	3065366	0	-	0.32	(0.28,0.32]	chr6	284765	3	SS5_PROX	SS5_PROX:INTRON	NUP153	ENSG00000124789.12	ENST00000613258.4:ENST00000537253.5:ENST00000262077.3	protein_coding	protein_coding	protein_coding	protein_coding	3	86	2	2.25939	3.064215	3.86904	0.021772	2.33993e-4	0.11491	0.0135358
chr2	182945040	182945139	1285068	0	-	0.50505	(0.476,0.515]	chr2	135307	25	INTRON	INTRON	NCKAP1	ENSG00000061676.15	ENST00000361354.9:ENST00000360982.2:ENST00000478449.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	123	2	2.87829	3.063945	3.2496	3.39435e-4	1.3427e-4	0.0170719	0.00998557
chr8	143827636	143827736	4084063	0	-	0.46	(0.44,0.476]	chr8	371347	1	SS3_PROX	SS3_PROX:INTRON	PUF60	ENSG00000179950.14	ENST00000526683.6:ENST00000349157.10:ENST00000456095.6:ENST00000313352.11:ENST00000453551.6:ENST00000527197.5:ENST00000526459.5:ENST00000527744.5:ENST00000531951.5:ENST00000529999.5:ENST00000531897.5:ENST00000533162.1:ENST00000532127.5:ENST00000526151.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	34	2	1.9039	3.063915	4.22393	0.0501498	0.0162322	0.156383	0.109464
chr5	134175387	134175478	2726346	0	-	0.417582	(0.408,0.44]	chr5	256514	6	UTR5	UTR5:EXON_MRNA:INTRON	SKP1	ENSG00000113558.19	ENST00000353411.11:ENST00000522552.5:ENST00000521216.5:ENST00000517625.5:ENST00000523966.5:ENST00000522855.5:ENST00000328392.10:ENST00000519054.5:ENST00000519321.5:ENST00000524288.1:ENST00000523359.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	82	2	2.30838	3.0638300000000003	3.81928	0.00547703	3.06208e-4	0.0671198	0.0161362
chr17	50979345	50979445	6795554	0	-	0.32	(0.28,0.32]	chr17	670842	2	SS5_PROX	SS5_PROX:INTRON	SPAG9	ENSG00000008294.22	ENST00000262013.12:ENST00000510283.5:ENST00000505279.5:ENST00000357122.8:ENST00000513746.6:ENST00000511312.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	166	2	2.81916	3.06381	3.30846	0.00117007	5.56432e-5	0.0312141	0.0061014
chr5	70227594	70227694	2638062	0	-	0.36	(0.35,0.378]	chr5	250619	14	INTRON	INTRON	GUSBP14	ENSG00000253816.3	ENST00000514522.2	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	5	100	2	2.36666	3.06381	3.76096	0.00212276	4.8203e-4	0.0426185	0.0203411
chr1	100117327	100117426	515702	0	-	0.484848	(0.476,0.515]	chr1	60466	65	INTRON	INTRON	SASS6	ENSG00000156876.10	ENST00000462159.1:ENST00000287482.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	68	2	3.05152	3.063765	3.07601	0.0064848	5.95211e-4	0.0699952	0.0221865
chr18	36011693	36011793	6962977	0	-	0.34	(0.32,0.35]	chr18	689044	180	INTRON	INTRON	RPRD1A	ENSG00000141425.18	ENST00000399022.9:ENST00000590898.5:ENST00000357384.8:ENST00000588737.5	protein_coding	protein_coding	protein_coding	protein_coding	2	63	2	2.64129	3.063745	3.4862	0.0222819	0.001711	0.124303	0.037419
chr14	103694219	103694304	5828320	0	+	0.435294	(0.408,0.44]	chr14	553145	2	INTRON	INTRON	KLC1	ENSG00000126214.22	ENST00000348520.10:ENST00000334553.11:ENST00000555836.5:ENST00000452929.6:ENST00000554280.5:ENST00000557450.5:ENST00000538504.6:ENST00000557686.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	15	279	2	2.30703	3.063705	3.82038	3.03811e-4	2.16742e-7	0.0161236	2.21275e-4
chr10	11549924	11550023	4555446	0	-	0.373737	(0.35,0.378]	chr10	420447	178	INTRON	INTRON	USP6NL	ENSG00000148429.15	ENST00000609104.6:ENST00000379237.6	protein_coding	protein_coding	protein_coding	protein_coding	2	32	2	1.82887	3.0636300000000003	4.29839	0.0584878	0.0294717	0.189395	0.128055
chr10	21603335	21603435	4405110	0	+	0.37	(0.35,0.378]	chr10	406466	75	INTRON	INTRON	MLLT10	ENSG00000078403.17	ENST00000651097.1:ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000650772.1:ENST00000651298.1:ENST00000495130.5:ENST00000377059.7:ENST00000652258.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	32	2	1.82887	3.0636300000000003	4.29839	0.0584878	0.0294717	0.189395	0.128055
chrX	24067075	24067172	7630863	0	+	0.505155	(0.476,0.515]	chrX	781475	6	INTRON	INTRON	EIF2S3	ENSG00000130741.11	ENST00000253039.9	protein_coding	protein_coding	protein_coding	protein_coding	3	68	2	2.48551	3.06339	3.64127	0.00756632	6.42302e-4	0.0773151	0.0231685
chr13	52431763	52431863	5599142	0	-	0.35	(0.32,0.35]	chr13	535333	25	INTRON	INTRON	VPS36	ENSG00000136100.14	ENST00000650274.1:ENST00000611132.4:ENST00000378060.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	119	2	2.29792	3.06338	3.82884	0.00175304	4.19685e-4	0.0387108	0.018968
chr12	56639479	56639561	5335742	0	-	0.585366	(0.57,1]	chr12	510115	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ATP5F1B	ENSG00000110955.9	ENST00000262030.8:ENST00000548474.2:ENST00000547808.5:ENST00000547250.5:ENST00000551020.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	96	2	2.73499	3.06335	3.39171	0.00237434	1.39024e-7	0.0438057	1.68566e-4
chr3	152277958	152278057	1535074	0	+	0.30303	(0.28,0.32]	chr3	159981	78	INTRON	INTRON	MBNL1	ENSG00000152601.18	ENST00000477171.1:ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000461436.1:ENST00000495875.6:ENST00000324210.10:ENST00000493459.5:ENST00000459747.1:ENST00000460591.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	85	2	3.00291	3.063115	3.12332	0.00698537	0.00110829	0.0718189	0.0305035
chr17	62002310	62002409	6810239	0	-	0.50505	(0.476,0.515]	chr17	672911	66	INTRON	INTRON	MED13	ENSG00000108510.10	ENST00000397786.7	protein_coding	protein_coding	protein_coding	protein_coding	2	50	2	2.82673	3.06306	3.29939	0.0134403	0.00211868	0.0946278	0.0425644
chr11	105428449	105428549	5029505	0	-	0.48	(0.476,0.515]	chr11	474017	1598	INTRON	INTRON	CARD18	ENSG00000255501.3	ENST00000649856.1:ENST00000528811.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	33	2	1.79693	3.06304	4.32915	0.0649782	0.0124637	0.179417	0.0973643
chr17	59150668	59150768	6802354	0	-	0.51	(0.476,0.515]	chr17	671859	124	INTRON	INTRON	SKA2	ENSG00000182628.13	ENST00000330137.12:ENST00000580541.1:ENST00000578105.1:ENST00000578519.5:ENST00000583927.1:ENST00000581068.5:ENST00000437036.6:ENST00000583380.5:ENST00000583976.1:ENST00000584089.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	33	2	1.79693	3.06304	4.32915	0.0649782	0.0124637	0.179417	0.0973643
chr8	130007733	130007833	4063845	0	-	0.48	(0.476,0.515]	chr8	369844	364	INTRON	INTRON	CYRIB	ENSG00000153310.21	ENST00000694912.1:ENST00000523288.5:ENST00000519110.5:ENST00000401979.6:ENST00000523509.5:ENST00000517654.5:ENST00000518879.5:ENST00000522702.5:ENST00000521223.5:ENST00000518283.5:ENST00000523993.5:ENST00000519020.5:ENST00000518167.5:ENST00000522361.1:ENST00000523514.1:ENST00000518285.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	33	2	1.79693	3.06304	4.32915	0.0649782	0.0124637	0.179417	0.0973643
chr11	46786531	46786628	4948145	0	-	0.43299	(0.408,0.44]	chr11	463765	15	INTRON	INTRON	CKAP5	ENSG00000175216.15	ENST00000529230.6:ENST00000312055.9:ENST00000354558.7	protein_coding	protein_coding	protein_coding	protein_coding	4	82	2	2.1226	3.062995	4.00339	0.012812	7.25052e-5	0.0926667	0.00709818
chr12	116099845	116099944	5423766	0	-	0.424242	(0.408,0.44]	chr12	518251	27	INTRON	INTRON	MED13L	ENSG00000123066.9	ENST00000281928.9:ENST00000650226.1:ENST00000548743.2:ENST00000647567.1	protein_coding	protein_coding	protein_coding	protein_coding	3	68	2	3.01942	3.0629150000000003	3.10641	0.00555646	7.74413e-4	0.0648867	0.0256083
chr11	18399744	18399842	4749747	0	+	0.510204	(0.476,0.515]	chr11	439735	3	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	LDHA	ENSG00000134333.14	ENST00000543445.5:ENST00000396222.6:ENST00000430553.6:ENST00000545467.5:ENST00000422447.8:ENST00000545215.5:ENST00000541097.5:ENST00000536528.5:ENST00000543695.5:ENST00000539814.5:ENST00000494573.6:ENST00000227157.8:ENST00000478970.6:ENST00000495052.5:ENST00000540430.5:ENST00000379412.9:ENST00000542179.1:ENST00000486690.6:ENST00000625635.1:ENST00000537296.5:ENST00000460405.5:ENST00000375710.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	211	2	2.18612	3.06291	3.9397	7.82083e-4	1.0551e-6	0.0257355	6.32938e-4
chr16	70271972	70272072	6510315	0	-	0.49	(0.476,0.515]	chr16	630583	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	AARS1	ENSG00000090861.17	ENST00000674963.1:ENST00000675643.1:ENST00000675917.1:ENST00000674691.1:ENST00000261772.13:ENST00000675569.1:ENST00000676209.1:ENST00000676211.1:ENST00000676040.1:ENST00000675953.1:ENST00000675691.1:ENST00000676004.1:ENST00000675270.1:ENST00000675403.1:ENST00000676212.1:ENST00000675045.1:ENST00000675035.1:ENST00000676168.1:ENST00000674652.1:ENST00000675133.1:ENST00000675120.1:ENST00000674811.1:ENST00000674512.1:ENST00000675853.1:ENST00000565361.3:ENST00000676247.1:ENST00000674848.1:ENST00000674962.1:ENST00000675371.1:ENST00000675986.1:ENST00000674768.1:ENST00000675297.1:ENST00000675751.1:ENST00000564359.6:ENST00000675338.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	51	2	2.63168	3.062895	3.49411	0.0237106	9.23453e-4	0.118716	0.0278392
chr19	4392580	4392679	7120049	0	-	0.484848	(0.476,0.515]	chr19	716287	21	INTRON	INTRON	SH3GL1	ENSG00000141985.9	ENST00000269886.7:ENST00000598564.5:ENST00000417295.6:ENST00000598219.1	protein_coding	protein_coding	protein_coding	protein_coding	2	51	2	2.63168	3.062895	3.49411	0.0237106	9.23453e-4	0.118716	0.0278392
chr4	78804676	78804776	1981668	0	+	0.32	(0.28,0.32]	chr4	198463	276	INTRON	INTRON	BMP2K	ENSG00000138756.19	ENST00000389010.7:ENST00000502613.3:ENST00000502871.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	85	2	2.63379	3.0628849999999996	3.49198	0.00503861	0.00195595	0.0646039	0.0400756
chr1	225779110	225779209	327255	0	+	0.40404	(0.378,0.408]	chr1	37651	7	INTRON	INTRON	SRP9	ENSG00000143742.14	ENST00000626563.2:ENST00000619790.4:ENST00000304786.12:ENST00000650651.1:ENST00000366839.8:ENST00000651465.1:ENST00000651761.1:ENST00000651653.1:ENST00000366838.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	14	301	2	2.81196	3.06288	3.3138	5.9786e-5	7.63577e-7	0.00679152	4.90537e-4
chr20	50599396	50599495	7354505	0	-	0.353535	(0.35,0.378]	chr20	750001	13	INTRON	INTRON	RIPOR3	ENSG00000042062.13	ENST00000327979.8:ENST00000045083.6:ENST00000462493.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	181	2	2.7537	3.062865	3.37203	1.41462e-4	5.34856e-5	0.0102625	0.00642151
chr16	16550200	16550300	6311364	0	+	0.37	(0.35,0.378]	chr16	604098	502	INTRON	INTRON	ENSG00000260126	ENSG00000260126.2	ENST00000567465.2	lncRNA	lncRNA	lncRNA	lncRNA	1	27	2	2.32443	3.0628599999999997	3.80129	0.0544216	0.0504034	0.17488	0.164972
chr3	9919304	9919402	1361658	0	+	0.357143	(0.35,0.378]	chr3	143261	3	INTRON	INTRON	IL17RC	ENSG00000163702.21	ENST00000383812.9:ENST00000416074.6:ENST00000483582.5:ENST00000403601.8:ENST00000295981.7:ENST00000451231.5:ENST00000498214.6:ENST00000438091.6:ENST00000466046.5:ENST00000469686.6:ENST00000412901.6:ENST00000434756.5:ENST00000696815.1:ENST00000494365.5:ENST00000696816.1:ENST00000696823.1:ENST00000696824.1:ENST00000696825.1:ENST00000696826.1:ENST00000696827.1:ENST00000696828.1:ENST00000451165.7:ENST00000696822.1:ENST00000696818.1:ENST00000696819.1:ENST00000696820.1:ENST00000696821.1:ENST00000696817.1:ENST00000696829.1:ENST00000436503.6:ENST00000451271.5:ENST00000476810.5:ENST00000696830.1:ENST00000424206.5:ENST00000490512.5:ENST00000440502.5:ENST00000455057.5:ENST00000696832.1:ENST00000413608.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	27	2	2.32443	3.0628599999999997	3.80129	0.0544216	0.0504034	0.17488	0.164972
chr16	30292146	30292236	6472931	0	-	0.4	(0.378,0.408]	chr16	625669	4	INTRON	INTRON	SMG1P5	ENSG00000183604.15	ENST00000529428.5:ENST00000411546.4:ENST00000691460.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	2	52	2	2.84663	3.06285	3.27907	0.0133954	0.0023379	0.0946278	0.0442989
chr2	182931979	182932078	1284933	0	-	0.383838	(0.378,0.408]	chr2	135290	8	INTRON	INTRON	NCKAP1	ENSG00000061676.15	ENST00000361354.9:ENST00000360982.2:ENST00000478449.5:ENST00000471640.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	52	2	2.84663	3.06285	3.27907	0.0133954	0.0023379	0.0946278	0.0442989
chr9	77290143	77290242	4146081	0	+	0.393939	(0.378,0.408]	chr9	377905	61	INTRON	INTRON	VPS13A	ENSG00000197969.14	ENST00000376636.7:ENST00000360280.8:ENST00000643348.1:ENST00000645632.1:ENST00000423463.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	52	2	2.84663	3.06285	3.27907	0.0133954	0.0023379	0.0946278	0.0442989
chr7	135498877	135498977	3648849	0	-	0.34	(0.32,0.35]	chr7	339187	601	INTRON	INTRON	CNOT4	ENSG00000080802.20	ENST00000541284.6:ENST00000451834.5:ENST00000423368.6:ENST00000361528.8:ENST00000428680.6:ENST00000315544.6:ENST00000491203.5:ENST00000498534.5:ENST00000465721.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	60	2	2.51061	3.0628399999999996	3.61507	0.0364463	6.48785e-4	0.138959	0.0230814
chr1	11799959	11800043	378882	0	-	0.630952	(0.57,1]	chr1	44472	3	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	MTHFR	ENSG00000177000.13	ENST00000376590.9:ENST00000376592.6:ENST00000376583.7:ENST00000376585.6:ENST00000641747.1:ENST00000641805.1:ENST00000641446.1:ENST00000423400.7:ENST00000641407.1:ENST00000641759.1:ENST00000641721.1:ENST00000376486.3:ENST00000641909.1:ENST00000641437.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	79	2	2.64588	3.0628	3.47972	3.49647e-4	4.55922e-6	0.0166791	0.00157263
chr12	864028	864125	5057303	0	+	0.28866000000000003	(0.28,0.32]	chr12	477474	14	INTRON	INTRON	WNK1	ENSG00000060237.19	ENST00000315939.11:ENST00000340908.9:ENST00000535572.5:ENST00000537687.5:ENST00000530271.6:ENST00000675631.1:ENST00000676347.1:ENST00000545285.5:ENST00000535698.1	protein_coding	protein_coding	protein_coding	protein_coding	6	160	2	3.05941	3.06279	3.06617	0.00136004	7.36818e-5	0.0336321	0.00714826
chr16	8038823	8038923	6440897	0	-	0.47	(0.44,0.476]	chr16	620351	312	INTRON	INTRON	ENSG00000260289	ENSG00000260289.2	ENST00000670665.1:ENST00000654046.1:ENST00000567103.2	lncRNA	lncRNA	lncRNA	lncRNA	4	82	2	2.44812	3.062755	3.67739	0.00368597	3.8961e-4	0.0535094	0.0177751
chr6	47561229	47561328	2874405	0	+	0.393939	(0.378,0.408]	chr6	272749	61	INTRON	INTRON	CD2AP	ENSG00000198087.7	ENST00000359314.5	protein_coding	protein_coding	protein_coding	protein_coding	4	45	2	1.71374	3.062715	4.41169	0.0274158	0.0199606	0.136498	0.109608
chr1	70222020	70222102	142595	0	+	0.414634	(0.408,0.44]	chr1	15971	2	SS5_PROX	SS5_PROX:INTRON	SRSF11	ENSG00000116754.14	ENST00000370951.5:ENST00000463877.1:ENST00000687381.1:ENST00000370950.7:ENST00000475204.5:ENST00000370949.2:ENST00000395136.7:ENST00000473950.5:ENST00000469170.5:ENST00000486667.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	20	359	2	2.57692	3.06269	3.54846	1.16804e-5	1.65672e-6	0.00252017	8.58048e-4
chr11	118755840	118755921	5046004	0	-	0.530864	(0.515,0.57]	chr11	475745	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DDX6	ENSG00000110367.14	ENST00000534980.7:ENST00000620157.4:ENST00000529162.1:ENST00000526070.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	106	2	2.57912	3.06256	3.546	6.01485e-4	5.07421e-5	0.0223465	0.00617596
chr21	6988436	6988535	7425904	0	-	0.40404	(0.378,0.408]	chr21	757520	14	INTRON	INTRON	ENSG00000280018	ENSG00000280018.4	ENST00000623165.3	lncRNA	lncRNA	lncRNA	lncRNA	13	281	2	2.97504	3.062435	3.14983	1.28484e-5	8.92434e-6	0.00284274	0.0021514
chrX	41159617	41159716	7644818	0	+	0.484848	(0.476,0.515]	chrX	782303	62	INTRON	INTRON	USP9X	ENSG00000124486.14	ENST00000324545.9:ENST00000378308.7	protein_coding	protein_coding	protein_coding	protein_coding	2	51	2	2.87879	3.0623750000000003	3.24596	0.00999149	0.00322919	0.0879541	0.0507087
chr5	131718200	131718295	2719952	0	-	0.347368	(0.32,0.35]	chr5	255708	12	INTRON	INTRON	FNIP1	ENSG00000217128.13	ENST00000510461.6:ENST00000307954.12:ENST00000307968.11:ENST00000511848.1	protein_coding	protein_coding	protein_coding	protein_coding	2	34	2	1.95271	3.0622599999999998	4.17181	0.04531	0.0431213	0.162255	0.149888
chr7	32890376	32890476	3515610	0	-	0.33	(0.32,0.35]	chr7	327782	101	INTRON	INTRON	KBTBD2	ENSG00000170852.12	ENST00000304056.9:ENST00000485611.5:ENST00000452926.1:ENST00000453627.1:ENST00000423022.1:ENST00000424468.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	78	2	2.67068	3.062145	3.45361	0.00406276	0.00193809	0.0578984	0.0399255
chr19	3392925	3393025	6999890	0	+	0.49	(0.476,0.515]	chr19	694173	103	INTRON	INTRON	NFIC	ENSG00000141905.19	ENST00000641145.1:ENST00000589123.5:ENST00000395111.7:ENST00000586919.5:ENST00000341919.7:ENST00000443272.3:ENST00000590282.5	protein_coding	protein_coding	protein_coding	protein_coding	3	67	2	2.54157	3.0620000000000003	3.58243	0.00697457	6.18479e-4	0.0718189	0.0223951
chr16	89374630	89374730	6542431	0	-	0.52	(0.515,0.57]	chr16	634240	11	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000647238.1:ENST00000644045.1:ENST00000643147.1:ENST00000644139.1:ENST00000568512.6:ENST00000566973.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	117	2	2.5304	3.06197	3.59354	3.73969e-4	3.84354e-5	0.0174448	0.00528498
chr1	246908854	246908953	681728	0	-	0.40404	(0.378,0.408]	chr1	80023	7	INTRON	INTRON	AHCTF1	ENSG00000153207.16	ENST00000648844.2:ENST00000326225.3:ENST00000366508.5	protein_coding	protein_coding	protein_coding	protein_coding	6	128	2	2.76717	3.061965	3.35676	2.59679e-4	2.33175e-4	0.014326	0.013966
chr7	99498145	99498240	3584095	0	-	0.378947	(0.378,0.408]	chr7	333875	4	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	ZNF394	ENSG00000160908.15	ENST00000651364.1:ENST00000462024.1:ENST00000337673.7:ENST00000426306.2:ENST00000651061.1:ENST00000394177.3:ENST00000481881.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	128	2	2.76717	3.061965	3.35676	2.59679e-4	2.33175e-4	0.014326	0.013966
chr17	68038391	68038490	6669367	0	+	0.393939	(0.378,0.408]	chr17	650744	5	INTRON	INTRON	KPNA2	ENSG00000182481.10	ENST00000676857.1:ENST00000676594.1:ENST00000677827.1:ENST00000676622.1:ENST00000678054.1:ENST00000583269.5:ENST00000678388.1:ENST00000677918.1:ENST00000676902.1:ENST00000677419.1:ENST00000679346.1:ENST00000677223.1:ENST00000677695.1:ENST00000679078.1:ENST00000330459.8:ENST00000584026.6:ENST00000537025.6:ENST00000677086.1:ENST00000579754.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	119	2	1.97234	3.06194	4.15154	0.00589072	3.36054e-5	0.067031	0.00463632
chr1	16345069	16345168	382546	0	-	0.444444	(0.44,0.476]	chr1	44888	293	INTRON	INTRON	FBXO42	ENSG00000037637.11	ENST00000375592.8	protein_coding	protein_coding	protein_coding	protein_coding	7	113	2	2.34296	3.06171	3.78046	7.10457e-4	3.54249e-4	0.0242715	0.0174886
chr17	1392134	1392234	6699528	0	-	0.33	(0.32,0.35]	chr17	655552	220	INTRON	INTRON	YWHAE	ENSG00000108953.17	ENST00000264335.13:ENST00000571732.5:ENST00000573026.1:ENST00000573196.5:ENST00000575977.1:ENST00000469398.5:ENST00000486241.1:ENST00000489287.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	202	2	2.9941	3.06168	3.12926	8.99126e-5	8.9151e-5	0.00844245	0.00794969
chrX	154788372	154788471	7915432	0	-	0.333333	(0.32,0.35]	chrX	806147	16	INTRON	INTRON	MPP1	ENSG00000130830.15	ENST00000369534.8:ENST00000413259.7:ENST00000439370.5:ENST00000393531.5:ENST00000453245.5:ENST00000494170.1:ENST00000462825.5:ENST00000393529.5:ENST00000475943.5:ENST00000428488.1:ENST00000488754.5:ENST00000417435.5:ENST00000488694.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	13	316	2	2.87448	3.0616149999999998	3.24875	1.00021e-4	2.07501e-6	0.00904854	8.88369e-4
chr9	111926796	111926896	4184759	0	+	0.35	(0.32,0.35]	chr9	381714	3	SS5_PROX	SS5_PROX:INTRON	UGCG	ENSG00000148154.10	ENST00000374279.4:ENST00000495085.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	177	2	2.77885	3.061585	3.34432	0.00116775	1.07137e-5	0.0312127	0.00239957
chr7	75464208	75464308	3558709	0	-	0.29	(0.28,0.32]	chr7	331545	216	INTRON	INTRON	POM121C	ENSG00000272391.6	ENST00000615331.5:ENST00000398379.2	protein_coding	protein_coding	protein_coding	protein_coding	2	63	2	2.73077	3.061405	3.39204	0.0220748	0.00188405	0.115395	0.0402736
chr16	46593556	46593656	6477833	0	-	0.43	(0.408,0.44]	chr16	626567	91	INTRON	INTRON	SHCBP1	ENSG00000171241.9	ENST00000303383.8	protein_coding	protein_coding	protein_coding	protein_coding	3	43	2	1.78881	3.0614049999999997	4.334	0.0370259	0.011982	0.139194	0.0962115
chr7	101962700	101962800	3367821	0	+	0.42	(0.408,0.44]	chr7	315233	27	INTRON	INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000497815.5:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000558469.5:ENST00000560541.5:ENST00000558836.5:ENST00000606749.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	43	2	1.78881	3.0614049999999997	4.334	0.0370259	0.011982	0.139194	0.0962115
chr18	46824766	46824866	6965789	0	-	0.4	(0.378,0.408]	chr18	689456	33	INTRON	INTRON	PIAS2	ENSG00000078043.16	ENST00000585916.6:ENST00000398654.7:ENST00000324794.11:ENST00000545673.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	197	2	2.85884	3.061395	3.26395	2.61007e-4	4.75227e-6	0.0149055	0.00147327
chr1	71063686	71063785	482844	0	-	0.212121	[0,0.28]	chr1	57837	5	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ZRANB2	ENSG00000132485.14	ENST00000370920.8:ENST00000477096.1:ENST00000254821.10	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	181	2	2.94758	3.06126	3.17494	0.00114737	1.99822e-4	0.0308663	0.0123381
chr8	73293246	73293342	3967597	0	-	0.625	(0.57,1]	chr8	364040	2	UTR5	UTR5:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPL7	ENSG00000147604.14	ENST00000352983.7:ENST00000396467.5:ENST00000396466.5:ENST00000396465.5:ENST00000431653.1	protein_coding	protein_coding	protein_coding	protein_coding	6	40	2	1.95367	3.0612399999999997	4.16881	0.00574776	0.00422673	0.0681402	0.0572185
chr21	33471967	33472066	7440904	0	-	0.454545	(0.44,0.476]	chr21	759376	19	INTRON	INTRON	TMEM50B	ENSG00000142188.17	ENST00000420455.5:ENST00000542230.7:ENST00000442441.5:ENST00000432504.1:ENST00000459909.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	50	2	2.9195	3.0612000000000004	3.2029	0.0102021	0.00308681	0.0850389	0.0510391
chr22	38074016	38074112	7513709	0	+	0.46875	(0.44,0.476]	chr22	767473	3	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PICK1	ENSG00000100151.16	ENST00000404072.7:ENST00000484021.5:ENST00000356976.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	50	2	2.9195	3.0612000000000004	3.2029	0.0102021	0.00308681	0.0850389	0.0510391
chr2	95853140	95853235	1178288	0	-	0.284211	(0.28,0.32]	chr2	125738	10	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	ANKRD36C	ENSG00000174501.15	ENST00000612359.4:ENST00000295246.7:ENST00000456556.5:ENST00000488721.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	63	2	3.04485	3.061145	3.07744	0.00894006	0.00604536	0.0799922	0.0700813
chr7	158907284	158907383	3456649	0	+	0.242424	[0,0.28]	chr7	323196	8	INTRON	INTRON	DYNC2I1	ENSG00000126870.16	ENST00000407559.8:ENST00000444851.5:ENST00000467220.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	148	2	2.34095	3.06113	3.78131	0.00198013	8.78221e-4	0.0411469	0.0271782
chr6	136285162	136285261	3231081	0	-	0.333333	(0.32,0.35]	chr6	300408	21	INTRON	INTRON	BCLAF1	ENSG00000029363.17	ENST00000640069.1:ENST00000531224.6:ENST00000353331.8:ENST00000527536.5:ENST00000527613.5:ENST00000530767.5:ENST00000527759.5:ENST00000534269.5:ENST00000532384.5:ENST00000530429.5:ENST00000628517.2:ENST00000529826.5:ENST00000528229.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	177	2	2.75109	3.061125	3.37116	2.88118e-4	9.09809e-5	0.015631	0.00797978
chr10	74109356	74109456	4455638	0	+	0.49	(0.476,0.515]	chr10	411496	2	SS5_PROX	SS5_PROX:INTRON	VCL	ENSG00000035403.18	ENST00000623461.3:ENST00000372755.7:ENST00000624354.3:ENST00000211998.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	37	2	1.68092	3.0610999999999997	4.44128	0.0474026	0.0151924	0.169265	0.0994339
chr12	70247414	70247514	5166471	0	+	0.48	(0.476,0.515]	chr12	489374	27	INTRON	INTRON	CNOT2	ENSG00000111596.14	ENST00000547780.5:ENST00000418359.7:ENST00000552319.5:ENST00000550160.5:ENST00000551661.5:ENST00000551132.5:ENST00000553078.5:ENST00000548021.5:ENST00000550641.6:ENST00000229195.8:ENST00000552915.5:ENST00000549443.5:ENST00000548741.5:ENST00000552483.5:ENST00000552422.5:ENST00000551179.1:ENST00000547321.5:ENST00000553020.5:ENST00000548159.5:ENST00000549750.5:ENST00000551043.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	37	2	1.68092	3.0610999999999997	4.44128	0.0474026	0.0151924	0.169265	0.0994339
chr2	232734316	232734416	1037614	0	+	0.49	(0.476,0.515]	chr2	110642	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	GIGYF2	ENSG00000204120.16	ENST00000476995.5:ENST00000629305.2:ENST00000427233.5:ENST00000428883.5:ENST00000409480.5:ENST00000456491.5:ENST00000484409.1:ENST00000492910.5:ENST00000373563.9:ENST00000409547.5:ENST00000430720.5:ENST00000425040.5:ENST00000421433.5:ENST00000475359.6:ENST00000490612.5:ENST00000464402.5:ENST00000488629.5:ENST00000423659.5:ENST00000409196.7:ENST00000488734.5:ENST00000409451.7:ENST00000463554.5:ENST00000440945.5:ENST00000429187.5:ENST00000482666.5:ENST00000490229.5:ENST00000483164.5:ENST00000464805.5:ENST00000489328.1:ENST00000424038.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	37	2	1.68092	3.0610999999999997	4.44128	0.0474026	0.0151924	0.169265	0.0994339
chr16	89808367	89808466	6544739	0	-	0.313131	(0.28,0.32]	chr16	634601	1	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	FANCA	ENSG00000187741.16	ENST00000561667.2:ENST00000389301.8:ENST00000568369.6:ENST00000564475.6:ENST00000696275.1:ENST00000696287.1:ENST00000696286.1:ENST00000696274.1:ENST00000696291.1:ENST00000696276.1:ENST00000567205.2:ENST00000567284.7:ENST00000696277.1:ENST00000696292.1:ENST00000563767.2:ENST00000567621.6:ENST00000696288.1:ENST00000696293.1:ENST00000566889.5:ENST00000389302.7:ENST00000696294.1:ENST00000696295.1:ENST00000563673.5:ENST00000543736.5:ENST00000534992.5:ENST00000565582.5:ENST00000696296.1:ENST00000563513.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	85	2	2.47203	3.061095	3.65016	0.0114089	6.39301e-4	0.0886611	0.0228666
chr7	111223107	111223207	3620713	0	-	0.18	[0,0.28]	chr7	337093	2592	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	71	2	2.89982	3.0610600000000003	3.2223	0.0158893	0.00422777	0.101453	0.0595466
chr8	129569921	129570021	4060986	0	-	0.27	[0,0.28]	chr8	369672	128	INTRON	INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1:ENST00000676273.1:ENST00000667643.1:ENST00000668791.1:ENST00000663716.1:ENST00000663572.1:ENST00000676148.1:ENST00000667962.1:ENST00000674877.1:ENST00000675316.1:ENST00000674656.1:ENST00000446592.7:ENST00000667341.1:ENST00000675186.1:ENST00000652971.1:ENST00000661447.1:ENST00000674863.1:ENST00000675498.1:ENST00000675527.1:ENST00000676108.1:ENST00000657647.1:ENST00000675589.1:ENST00000675913.1:ENST00000675109.1:ENST00000671632.1:ENST00000671311.1:ENST00000676099.1:ENST00000660652.1:ENST00000675522.1:ENST00000675044.1:ENST00000675435.1:ENST00000674639.1:ENST00000676069.1:ENST00000675532.1:ENST00000674762.1:ENST00000523151.6:ENST00000675948.1:ENST00000665364.1:ENST00000657251.1:ENST00000675166.1:ENST00000674883.1:ENST00000675867.1:ENST00000674580.1:ENST00000675393.1:ENST00000520048.1:ENST00000674906.1:ENST00000676030.1:ENST00000670588.1:ENST00000675072.1:ENST00000664936.1:ENST00000652914.1:ENST00000657069.1:ENST00000674882.1	lncRNA	lncRNA	lncRNA	lncRNA	11	339	2	2.99105	3.061045	3.13104	1.06882e-4	4.44213e-5	0.00925618	0.00540591
chr1	21725409	21725506	396272	0	-	0.391753	(0.378,0.408]	chr1	47275	4	INTRON	INTRON	USP48	ENSG00000090686.16	ENST00000400301.5:ENST00000308271.14:ENST00000529637.5:ENST00000487880.2:ENST00000526044.5:ENST00000534705.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	70	2	2.51733	3.06081	3.60429	0.00808319	5.71664e-4	0.0766625	0.0217398
chr2	135065578	135065677	872802	0	+	0.292929	(0.28,0.32]	chr2	97740	29	INTRON	INTRON	RAB3GAP1	ENSG00000115839.19	ENST00000539493.3:ENST00000688088.1:ENST00000693554.1:ENST00000690785.1:ENST00000689880.1:ENST00000264158.13:ENST00000690208.1:ENST00000691478.1:ENST00000686114.1:ENST00000685967.1:ENST00000442034.5:ENST00000687199.1:ENST00000691339.1:ENST00000688182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	118	2	2.62951	3.060745	3.49198	0.00195595	7.40084e-4	0.0400756	0.024882
chr7	128000365	128000465	3405909	0	+	0.49	(0.476,0.515]	chr7	318188	24	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000486037.1:ENST00000484767.5:ENST00000470723.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	67	2	2.58253	3.06074	3.53895	0.00600101	0.00075485700000000005	0.0674604	0.0251966
chr4	78794692	78794792	1981568	0	+	0.47	(0.44,0.476]	chr4	198463	176	INTRON	INTRON	BMP2K	ENSG00000138756.19	ENST00000389010.7:ENST00000502613.3:ENST00000502871.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	130	2	3.0558	3.060665	3.06553	2.18249e-4	1.35514e-4	0.0135423	0.0100405
chr19	18479332	18479432	7152587	0	-	0.36	(0.35,0.378]	chr19	722886	35	INTRON	INTRON	ELL	ENSG00000105656.13	ENST00000262809.9:ENST00000594635.6:ENST00000596915.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	40	2	1.82281	3.0606	4.29839	0.0316938	0.0294717	0.144635	0.128055
chr2	87801388	87801486	1172951	0	-	0.489796	(0.476,0.515]	chr2	125238	3	INTRON	INTRON	RGPD2	ENSG00000185304.16	ENST00000398146.5	protein_coding	protein_coding	protein_coding	protein_coding	9	179	2	2.8879	3.060575	3.23325	8.0474e-5	2.74912e-5	0.00804467	0.00414488
chr8	41959959	41960059	3940375	0	-	0.36	(0.35,0.378]	chr8	361181	17	INTRON	INTRON	KAT6A	ENSG00000083168.11	ENST00000406337.6:ENST00000265713.8:ENST00000396930.4:ENST00000649817.1:ENST00000648335.1:ENST00000649827.1:ENST00000485568.5:ENST00000647809.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	51	2	1.47599	3.0602799999999997	4.64457	0.0425671	0.012652	0.162011	0.0926667
chr19	19434064	19434163	7035631	0	+	0.333333	(0.32,0.35]	chr19	701439	57	INTRON	INTRON	GATAD2A	ENSG00000167491.18	ENST00000494516.6:ENST00000360315.7:ENST00000609040.5:ENST00000417582.6:ENST00000683918.1:ENST00000448576.6:ENST00000432704.5:ENST00000404158.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	45	2	2.3471	3.06027	3.77344	0.0596635	0.0156413	0.189982	0.101393
chr15	50620892	50620991	6172613	0	-	0.424242	(0.408,0.44]	chr15	588330	7	INTRON	INTRON	TRPM7	ENSG00000092439.16	ENST00000646667.1:ENST00000560955.5:ENST00000560638.1	protein_coding	protein_coding	protein_coding	protein_coding	3	70	2	2.89795	3.060265	3.2225799999999998	0.0110735	2.79412e-4	0.0873897	0.0148832
chr6	160033307	160033407	3023618	0	+	0.51	(0.476,0.515]	chr6	282058	2	SS5_PROX	SS5_PROX:INTRON	IGF2R	ENSG00000197081.16	ENST00000676781.1:ENST00000677704.1:ENST00000356956.6:ENST00000649737.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	67	2	2.96824	3.06013	3.15202	0.00455841	9.98194e-4	0.0595107	0.0290732
chr20	49282118	49282218	7284642	0	+	0.48	(0.476,0.515]	chr20	741064	3	SS5_PROX	SS5_PROX:INTRON	ZFAS1	ENSG00000177410.13	ENST00000371743.8:ENST00000417721.5:ENST00000441722.5:ENST00000450535.5:ENST00000458653.5:ENST00000428008.6:ENST00000620594.2:ENST00000652916.1:ENST00000326677.9:ENST00000659056.1	lncRNA	lncRNA	lncRNA	lncRNA	11	240	2	2.83134	3.06012	3.2889	7.77209e-5	3.80629e-6	0.00735438	0.0014057
chr16	23421885	23421984	6463769	0	-	0.313131	(0.28,0.32]	chr16	623765	27	INTRON	INTRON	COG7	ENSG00000168434.13	ENST00000307149.10	protein_coding	protein_coding	protein_coding	protein_coding	3	43	2	1.61031	3.06006	4.50981	0.0600513	0.0275554	0.190658	0.123904
chr5	131689344	131689444	2719657	0	-	0.21	[0,0.28]	chr5	255672	98	INTRON	INTRON	FNIP1	ENSG00000217128.13	ENST00000510461.6:ENST00000307954.12:ENST00000307968.11:ENST00000511848.1	protein_coding	protein_coding	protein_coding	protein_coding	2	71	2	2.81922	3.060025	3.30083	0.0197411	0.00319246	0.109608	0.0520345
chr3	48924126	48924217	1421502	0	+	0.406593	(0.378,0.408]	chr3	149467	10	INTRON	INTRON	ARIH2	ENSG00000177479.20	ENST00000478224.5:ENST00000430423.5:ENST00000452882.5:ENST00000498314.5:ENST00000474618.5:ENST00000492077.5:ENST00000449376.5:ENST00000490095.5:ENST00000463738.5:ENST00000356401.9:ENST00000495761.5:ENST00000483333.5:ENST00000482427.5:ENST00000488963.5:ENST00000420814.5:ENST00000486316.5:ENST00000449729.5:ENST00000433170.5:ENST00000474936.6:ENST00000466850.1:ENST00000484999.5:ENST00000470296.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	84	2	2.75997	3.059975	3.35998	0.00230615	7.19668e-4	0.0428247	0.0244856
chr20	2657659	2657748	7222262	0	+	0.404494	(0.378,0.408]	chr20	733856	4	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NOP56	ENSG00000101361.17	ENST00000651302.1:ENST00000329276.10:ENST00000612233.1:ENST00000467196.5:ENST00000616692.1:ENST00000415272.2:ENST00000492135.5:ENST00000466447.5:ENST00000462630.5:ENST00000467857.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	177	2	3.02924	3.0598850000000004	3.0905300000000002	1.05533e-4	3.85412e-5	0.00920724	0.00500557
chr2	69373409	69373505	1147171	0	-	0.4375	(0.408,0.44]	chr2	122524	16	INTRON	INTRON	GFPT1	ENSG00000198380.13	ENST00000361060.5:ENST00000357308.9:ENST00000674507.1:ENST00000674438.1:ENST00000494201.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	43	2	1.60344	3.05974	4.51604	0.0387506	0.0137419	0.160156	0.0949306
chr1	148893084	148893184	214680	0	+	0.41	(0.408,0.44]	chr1	23778	28	INTRON	INTRON	PDE4DIP	ENSG00000178104.20	ENST00000695768.1:ENST00000695767.1:ENST00000695766.1:ENST00000530472.5:ENST00000695794.1:ENST00000524974.5:ENST00000620605.4:ENST00000585156.5:ENST00000695769.1:ENST00000618462.4:ENST00000695795.1:ENST00000617031.4:ENST00000617527.4:ENST00000533259.1:ENST00000619981.4:ENST00000617454.4:ENST00000613995.4:ENST00000621371.4:ENST00000534536.5:ENST00000528129.5:ENST00000369356.8:ENST00000533845.1:ENST00000526445.1:ENST00000369354.7:ENST00000369347.8:ENST00000369349.7:ENST00000369351.7:ENST00000612094.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	68	2	2.36185	3.0597000000000003	3.75755	0.0133164	2.62433e-4	0.094512	0.0143317
chr2	148035424	148035523	886891	0	+	0.393939	(0.378,0.408]	chr2	98613	69	INTRON	INTRON	MBD5	ENSG00000204406.14	ENST00000407073.5:ENST00000488372.5:ENST00000496158.5:ENST00000642680.2:ENST00000638130.1:ENST00000637308.1:ENST00000473478.5:ENST00000635796.1:ENST00000637997.1:ENST00000470063.5:ENST00000638043.2:ENST00000469438.1:ENST00000638090.1:ENST00000637445.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	52	2	3.00568	3.05964	3.1136	0.00811866	0.00443339	0.0766625	0.061054
chr1	21774664	21774764	396785	0	-	0.47	(0.44,0.476]	chr1	47345	165	INTRON	INTRON	USP48	ENSG00000090686.16	ENST00000400301.5:ENST00000308271.14:ENST00000529637.5:ENST00000421625.6:ENST00000527823.5:ENST00000532737.1:ENST00000489108.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	80	2	2.53696	3.059575	3.58219	0.00204135	8.57842e-4	0.041855	0.0267428
chr4	39740888	39740987	1953420	0	+	0.313131	(0.28,0.32]	chr4	195636	30	INTRON	INTRON	UBE2K	ENSG00000078140.14	ENST00000510934.5:ENST00000261427.10:ENST00000438068.6:ENST00000513231.5:ENST00000503368.5:ENST00000445950.2:ENST00000510719.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	143	2	2.71415	3.0595600000000003	3.40497	0.005045	3.20607e-5	0.0621586	0.00452256
chr1	65306049	65306148	136054	0	+	0.383838	(0.378,0.408]	chr1	15346	408	INTRON	INTRON	DNAJC6	ENSG00000116675.16	ENST00000463018.5:ENST00000494710.6:ENST00000263441.11:ENST00000395325.7:ENST00000483402.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	98	2	2.0102	3.05952	4.10884	0.00940766	8.2664e-5	0.0861183	0.00812487
chr14	100367686	100367779	5968818	0	-	0.451613	(0.44,0.476]	chr14	567112	13	INTRON	INTRON	WARS1	ENSG00000140105.18	ENST00000392882.7:ENST00000358655.8:ENST00000355338.6:ENST00000344102.9:ENST00000557135.5:ENST00000556645.5:ENST00000553395.5:ENST00000556504.5:ENST00000557722.5:ENST00000557297.5:ENST00000556435.5:ENST00000553808.5:ENST00000554331.5:ENST00000555063.5:ENST00000556338.5:ENST00000557239.5:ENST00000556698.5:ENST00000553524.5:ENST00000555410.5:ENST00000556579.5:ENST00000554772.5:ENST00000556660.5:ENST00000556783.5:ENST00000553413.5:ENST00000557094.5:ENST00000553769.6:ENST00000553545.5:ENST00000554820.5:ENST00000557347.5:ENST00000554509.5:ENST00000556209.5:ENST00000554605.5:ENST00000555813.5:ENST00000556695.5:ENST00000556295.5:ENST00000555031.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	94	2	2.68583	3.0594400000000004	3.43305	0.00159668	3.91317e-4	0.0364566	0.0178091
chr5	151788867	151788963	2521970	0	+	0.520833	(0.515,0.57]	chr5	241304	7	INTRON	INTRON	G3BP1	ENSG00000145907.16	ENST00000523519.5:ENST00000520578.6:ENST00000678070.1:ENST00000678964.1:ENST00000678925.1:ENST00000394123.7:ENST00000676978.1:ENST00000679289.1:ENST00000677493.1:ENST00000676644.1:ENST00000677757.1:ENST00000522761.6:ENST00000677909.1:ENST00000676827.1:ENST00000520177.6:ENST00000676634.1:ENST00000678854.1:ENST00000677602.1:ENST00000519832.1:ENST00000676911.1:ENST00000356245.8:ENST00000678646.1:ENST00000677381.1:ENST00000678904.1:ENST00000678910.1:ENST00000678101.1:ENST00000677105.1:ENST00000676813.1:ENST00000522367.6:ENST00000517947.5:ENST00000507878.7:ENST00000678369.1:ENST00000677433.1:ENST00000678564.1:ENST00000677252.1:ENST00000677923.1:ENST00000677323.1:ENST00000522666.1:ENST00000679057.1:ENST00000677146.1:ENST00000677126.1:ENST00000678027.1:ENST00000678209.1:ENST00000678153.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	111	2	2.79153	3.0594200000000003	3.32731	6.28135e-4	2.16537e-5	0.023031	0.00361845
chr7	155309444	155309543	3451883	0	+	0.363636	(0.35,0.378]	chr7	322637	12	UTR3	UTR3:EXON_MRNA	INSIG1	ENSG00000186480.13	ENST00000344756.8:ENST00000340368.9	protein_coding	protein_coding	protein_coding	protein_coding	18	416	2	2.44634	3.059365	3.67239	8.29688e-5	3.25679e-7	0.00766582	3.12285e-4
chrX	19352195	19352292	7629273	0	+	0.484536	(0.476,0.515]	chrX	781175	4	INTRON	INTRON	PDHA1	ENSG00000131828.14	ENST00000540249.5:ENST00000696704.1:ENST00000696705.1:ENST00000422285.7:ENST00000423505.6:ENST00000355808.10:ENST00000379805.4:ENST00000417819.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	127	2	1.82192	3.0593649999999997	4.29681	0.00497872	2.44502e-5	0.0646039	0.00406051
chr18	9192763	9192862	6869492	0	+	0.494949	(0.476,0.515]	chr18	680568	99	INTRON	INTRON	ANKRD12	ENSG00000101745.17	ENST00000585234.5:ENST00000262126.9:ENST00000540578.6:ENST00000581635.5:ENST00000400020.7:ENST00000581758.1:ENST00000546007.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	43	2	1.58842	3.0593250000000003	4.53023	0.0406588	0.0119748	0.161534	0.0899583
chr15	67069709	67069808	6051886	0	+	0.525253	(0.515,0.57]	chr15	576256	14	INTRON	INTRON	SMAD3	ENSG00000166949.17	ENST00000559460.5:ENST00000327367.9:ENST00000679624.1	protein_coding	protein_coding	protein_coding	protein_coding	3	59	2	2.27238	3.059315	3.84625	0.0161808	1.34155e-4	0.101453	0.00998237
chr9	5005689	5005788	4096027	0	+	0.333333	(0.32,0.35]	chr9	373235	193	INTRON	INTRON	JAK2	ENSG00000096968.14	ENST00000636127.1:ENST00000476574.5:ENST00000381652.4	protein_coding	protein_coding	protein_coding	protein_coding	4	47	2	1.49965	3.05927	4.61889	0.0542985	0.0166646	0.182243	0.102621
chr3	13347496	13347596	1617853	0	-	0.6	(0.57,1]	chr3	167134	38	INTRON	INTRON	NUP210	ENSG00000132182.13	ENST00000254508.7:ENST00000695490.1:ENST00000695491.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	67	2	2.92143	3.05925	3.19707	2.16062e-4	5.97965e-5	0.0129138	0.00679152
chr11	63626652	63626751	4962366	0	-	0.454545	(0.44,0.476]	chr11	467121	27	UTR3	UTR3:EXON_MRNA	ATL3	ENSG00000184743.13	ENST00000398868.8	protein_coding	protein_coding	protein_coding	protein_coding	3	67	2	2.64669	3.0592449999999998	3.4718	0.0040295	0.00136358	0.0578376	0.0336321
chr7	102371744	102371843	3371152	0	+	0.383838	(0.378,0.408]	chr7	315430	53	INTRON	INTRON	PRKRIP1:ENSG00000239969	ENSG00000128563.13:ENSG00000239969.6	ENST00000477886.5:ENST00000469763.5:ENST00000482549.5:ENST00000496391.5:ENST00000484974.5:ENST00000492837.1:ENST00000482465.5	protein_coding	protein_coding	protein_coding:transcribed_unprocessed_pseudogene	protein_coding:processed_transcript	3	70	2	2.39444	3.059205	3.72397	0.0122858	3.23378e-4	0.091087	0.0159645
chr6	149520659	149520759	3245306	0	-	0.4	(0.378,0.408]	chr6	301491	2	SS5_PROX	SS5_PROX:INTRON	PPIL4	ENSG00000131013.4	ENST00000253329.3	protein_coding	protein_coding	protein_coding	protein_coding	3	70	2	2.55607	3.059075	3.56208	0.00704647	6.94246e-4	0.0718189	0.0240761
chr1	28580266	28580359	409407	0	-	0.419355	(0.408,0.44]	chr1	49297	5	EXON_MRNA	EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SNHG12	ENSG00000197989.15	ENST00000648127.1:ENST00000470977.6:ENST00000531126.7:ENST00000461832.2:ENST00000481368.6:ENST00000692541.1:ENST00000693199.1:ENST00000461448.6:ENST00000481220.6:ENST00000464612.5:ENST00000474814.1:ENST00000475441.6:ENST00000488745.5:ENST00000483436.5:ENST00000650239.1:ENST00000648251.1:ENST00000464115.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	19	403	2	2.99954	3.0587850000000003	3.11803	5.55154e-6	2.62762e-6	0.00163732	0.0011502
chr17	19112082	19112166	6740857	0	-	0.714286	(0.57,1]	chr17	661757	2	EXON_LNCRNA	EXON_LNCRNA	ENSG00000262202	ENSG00000262202.4	ENST00000573866.2	lncRNA	lncRNA	lncRNA	lncRNA	11	142	2	2.73474	3.05876	3.38278	0.00241874	1.64077e-8	0.0454275	4.11909e-5
chr19	19658106	19658206	7155049	0	-	0.44	(0.408,0.44]	chr19	723455	3	INTRON	INTRON	ATP13A1	ENSG00000105726.17	ENST00000357324.11:ENST00000291503.9:ENST00000474955.5:ENST00000492774.1:ENST00000455627.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	110	2	2.86357	3.0587	3.2538299999999998	5.90913e-4	2.37059e-4	0.0225024	0.0136195
chr15	65517047	65517144	6208056	0	-	0.515464	(0.515,0.57]	chr15	592340	15	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	DPP8	ENSG00000074603.19	ENST00000341861.9:ENST00000300141.11:ENST00000358939.8:ENST00000321147.10:ENST00000559526.5:ENST00000560436.1:ENST00000560194.1:ENST00000560665.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	59	2	2.45585	3.05868	3.66151	0.00797827	4.49566e-4	0.0798772	0.0196044
chr7	32584942	32585041	3304149	0	+	0.535354	(0.515,0.57]	chr7	306851	10	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	AVL9	ENSG00000105778.20	ENST00000318709.9:ENST00000409301.5:ENST00000446718.1:ENST00000497020.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	59	2	2.45585	3.05868	3.66151	0.00797827	4.49566e-4	0.0798772	0.0196044
chr5	139307238	139307326	2499516	0	+	0.386364	(0.378,0.408]	chr5	238916	1	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	MATR3	ENSG00000280987.4:ENSG00000015479.20	ENST00000509990.5:ENST00000506147.5:ENST00000512107.5:ENST00000361059.7:ENST00000394800.6:ENST00000502929.5:ENST00000504203.5:ENST00000514694.5:ENST00000509644.5:ENST00000505016.2:ENST00000502394.1:ENST00000512876.5:ENST00000513678.5:ENST00000513121.1:ENST00000504045.5:ENST00000504311.5:ENST00000502499.5:ENST00000510056.5:ENST00000511249.5:ENST00000394805.8:ENST00000507860.1:ENST00000509918.5:ENST00000503811.5:ENST00000511978.5:ENST00000618441.5:ENST00000508689.1:ENST00000514528.5:ENST00000504643.5:ENST00000514488.1:ENST00000503340.1:ENST00000504023.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	158	2	2.80517	3.058675	3.31218	2.90033e-4	4.88656e-5	0.0157077	0.00571605
chr2	127762620	127762708	1225389	0	-	0.352273	(0.35,0.378]	chr2	130487	2	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	WDR33	ENSG00000136709.12	ENST00000322313.9:ENST00000436787.5:ENST00000393006.5:ENST00000409658.7	protein_coding	protein_coding	protein_coding	protein_coding	2	36	2	1.81767	3.05864	4.29961	0.0640429	0.0158483	0.177882	0.109464
chr6	4797903	4798003	2791077	0	+	0.32	(0.28,0.32]	chr6	263598	207	INTRON	INTRON	CDYL	ENSG00000153046.18	ENST00000328908.9:ENST00000491864.1:ENST00000440139.5:ENST00000483019.1:ENST00000397588.8:ENST00000472453.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	158	2	2.60897	3.05856	3.50815	8.17961e-4	1.92578e-4	0.0261401	0.0127226
chr17	59902400	59902500	6643855	0	+	0.29	(0.28,0.32]	chr17	648798	81	INTRON	INTRON	RPS6KB1	ENSG00000108443.14	ENST00000393021.7:ENST00000472940.5:ENST00000225577.9:ENST00000477179.5:ENST00000443572.6:ENST00000489824.1:ENST00000406116.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	64	2	2.57195	3.058545	3.54514	0.0331711	0.00100603	0.133994	0.0292285
chr17	77496113	77496213	6681628	0	+	0.52	(0.515,0.57]	chr17	652615	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	SEPTIN9	ENSG00000184640.20	ENST00000591198.5:ENST00000427177.6:ENST00000431235.6:ENST00000449803.6:ENST00000329047.13:ENST00000588690.6:ENST00000423034.6:ENST00000427674.6:ENST00000585930.5:ENST00000541152.6:ENST00000591088.5:ENST00000592481.6:ENST00000592951.5:ENST00000427180.5:ENST00000586456.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	58	2	2.58624	3.058545	3.53085	0.00526399	6.59951e-4	0.0633874	0.0232396
chr2	31926314	31926413	1090272	0	-	0.393939	(0.378,0.408]	chr2	116896	22	INTRON	INTRON	MEMO1:DPY30	ENSG00000162959.14:ENSG00000162961.14	ENST00000295065.9:ENST00000446765.5:ENST00000404530.6:ENST00000379383.7:ENST00000490459.5:ENST00000426310.6:ENST00000422936.5:ENST00000413686.1:ENST00000407893.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	112	2	3.03888	3.05836	3.07784	0.00102794	1.31892e-4	0.029231300000000002	0.00990163
chr6	166998012	166998112	3264621	0	-	0.6	(0.57,1]	chr6	303074	2	PRIMIRNA	PRIMIRNA:INTRON	ENSG00000227598:ENSG00000285730:MIR3939	ENSG00000227598.1:ENSG00000285730.1:ENSG00000265828.1	ENST00000444102.1:ENST00000649589.1:ENST00000582614.1	miRNA	lncRNA	miRNA:lncRNA	lncRNA:primary_miRNA	5	54	2	1.71424	3.05836	4.40248	0.0279017	2.27325e-6	0.137011	0.00104829
chr7	76048956	76049047	3339661	0	+	0.483516	(0.476,0.515]	chr7	310989	5	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	MDH2	ENSG00000146701.12	ENST00000461263.2:ENST00000443006.5:ENST00000315758.10:ENST00000461665.5:ENST00000432020.2:ENST00000490105.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	47	2	1.50151	3.05835	4.61519	0.054954	0.00528365	0.165463	0.0656295
chr8	89741636	89741736	3985121	0	-	0.45	(0.44,0.476]	chr8	364998	156	INTRON	INTRON	RIPK2-DT	ENSG00000251136.10	ENST00000688654.1:ENST00000690564.1:ENST00000661105.1:ENST00000685145.1:ENST00000519655.6:ENST00000656898.2:ENST00000685787.1:ENST00000693018.1:ENST00000691313.1:ENST00000691446.1:ENST00000524190.2:ENST00000691897.1:ENST00000685988.1:ENST00000691595.1:ENST00000688855.1:ENST00000504145.6:ENST00000685619.1:ENST00000653574.1:ENST00000687824.1:ENST00000521996.2:ENST00000692782.1:ENST00000655144.2:ENST00000687204.1:ENST00000689241.1:ENST00000686009.1:ENST00000685448.1	lncRNA	lncRNA	lncRNA	lncRNA	4	90	2	2.74546	3.05815	3.37084	0.00326603	1.26042e-4	0.0508595	0.00959902
chr2	203087200	203087299	987428	0	+	0.525253	(0.515,0.57]	chr2	105928	11	INTRON	INTRON	NBEAL1	ENSG00000144426.19	ENST00000682333.1:ENST00000683969.1:ENST00000449802.5:ENST00000681967.1:ENST00000683338.1:ENST00000683001.1:ENST00000682108.1:ENST00000483147.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	30	2	1.9459	3.058135	4.17037	0.0429089	0.0139194	0.148082	0.10247
chr12	22658913	22659013	5095086	0	+	0.33	(0.32,0.35]	chr12	481246	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	ETNK1	ENSG00000139163.16	ENST00000671733.1:ENST00000266517.9:ENST00000538218.2:ENST00000673406.1:ENST00000672995.1:ENST00000539974.1:ENST00000673188.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	58	2	2.74415	3.058125	3.3721	0.0198267	0.00182912	0.109608	0.0396683
chr22	23266649	23266746	7484074	0	+	0.536082	(0.515,0.57]	chr22	763569	18	INTRON	INTRON	BCR	ENSG00000186716.21	ENST00000359540.7:ENST00000305877.13:ENST00000427791.1	protein_coding	protein_coding	protein_coding	protein_coding	10	176	2	2.85119	3.0580749999999997	3.26496	3.81825e-5	8.45526e-6	0.00527239	0.00210337
chr7	36441175	36441274	3307538	0	+	0.40404	(0.378,0.408]	chr7	307197	15	INTRON	INTRON	ANLN	ENSG00000011426.11	ENST00000396068.6:ENST00000265748.7:ENST00000428612.5:ENST00000457743.1	protein_coding	protein_coding	protein_coding	protein_coding	3	71	2	2.21238	3.058045	3.90371	0.0218124	1.30398e-4	0.11491	0.00983066
chr16	16538304	16538404	6311245	0	+	0.55	(0.515,0.57]	chr16	604098	383	INTRON	INTRON	ENSG00000260126	ENSG00000260126.2	ENST00000567465.2	lncRNA	lncRNA	lncRNA	lncRNA	4	41	2	1.43029	3.057985	4.68568	0.0645632	0.00270027	0.179192	0.0479115
chr11	66637364	66637463	4811011	0	+	0.474747	(0.44,0.476]	chr11	447879	76	INTRON	INTRON	RBM14-RBM4	ENSG00000248643.5	ENST00000412278.2:ENST00000511114.1:ENST00000421355.1:ENST00000500635.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	129	2	2.88768	3.0578950000000003	3.22811	5.10179e-4	5.22147e-5	0.020816	0.00590253
chr3	14404244	14404344	1369408	0	+	0.58	(0.57,1]	chr3	144308	10	INTRON	INTRON	SLC6A6	ENSG00000131389.18	ENST00000613060.4:ENST00000618278.4:ENST00000610642.4:ENST00000622810.4:ENST00000649500.1:ENST00000622186.5:ENST00000621751.4:ENST00000613930.4:ENST00000622176.4:ENST00000615188.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	32	2	2.36411	3.05788	3.75165	0.0408868	1.54884e-4	0.161534	0.0113252
chr6	42752909	42753009	2866471	0	+	0.46	(0.44,0.476]	chr6	271284	55	INTRON	INTRON	BICRAL	ENSG00000112624.13	ENST00000614467.4	protein_coding	protein_coding	protein_coding	protein_coding	4	80	2	2.6062	3.05787	3.50954	0.00148054	0.00116647	0.0353633	0.0312127
chr1	154179845	154179943	558457	0	-	0.336735	(0.32,0.35]	chr1	66272	18	INTRON	INTRON	TPM3	ENSG00000143549.21	ENST00000611659.4:ENST00000368533.8:ENST00000469717.5:ENST00000330188.13:ENST00000341485.10:ENST00000341372.8:ENST00000328159.9:ENST00000509409.5:ENST00000651873.1:ENST00000271850.11:ENST00000368531.6:ENST00000323144.12:ENST00000651641.1:ENST00000368530.7:ENST00000509601.1:ENST00000651644.1:ENST00000368527.7:ENST00000473036.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	58	2	3.03597	3.05786	3.07975	0.00832487	0.00554235	0.0774402	0.0674105
chr16	24786638	24786738	6329789	0	+	0.43	(0.408,0.44]	chr16	605958	78	INTRON	INTRON	TNRC6A	ENSG00000090905.19	ENST00000395799.8:ENST00000315183.11:ENST00000491718.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	82	2	2.82697	3.057745	3.28852	0.00287185	4.95662e-4	0.0474836	0.0201536
chr2	190910621	190910721	959784	0	+	0.25	[0,0.28]	chr2	104190	3	SS5_PROX	SS5_PROX:INTRON	GLS	ENSG00000115419.13	ENST00000320717.8:ENST00000338435.8:ENST00000417154.5:ENST00000461965.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	71	2	2.97616	3.05771	3.13926	0.0128425	0.00563224	0.0926667	0.0678837
chr19	16635468	16635568	7150533	0	-	0.46	(0.44,0.476]	chr19	722432	3	INTRON	INTRON	SMIM7	ENSG00000214046.9	ENST00000465250.6:ENST00000481671.6:ENST00000594662.5:ENST00000597781.5:ENST00000598278.5	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	3	68	2	2.49823	3.057705	3.61718	0.00718224	7.37432e-4	0.0756118	0.02495
chr17	759516	759610	6698786	0	-	0.393617	(0.378,0.408]	chr17	655454	3	UTR3	UTR3:EXON_MRNA:INTRON	GLOD4	ENSG00000167699.14	ENST00000575800.1:ENST00000571073.5:ENST00000301329.11:ENST00000301328.9:ENST00000576239.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	71	2	2.73557	3.0576350000000003	3.3797	0.00360869	0.00154501	0.0533855	0.0362716
chr6	170548505	170548605	3267630	0	-	0.29	(0.28,0.32]	chr6	303380	1	SS5_PROX	SS5_PROX:INTRON	PSMB1	ENSG00000008018.9	ENST00000262193.7:ENST00000462957.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	84	2	2.84671	3.0576049999999997	3.2685	0.00432734	0.00216662	0.0579331	0.0434015
chr2	15391852	15391951	1071444	0	-	0.313131	(0.28,0.32]	chr2	114321	82	INTRON	INTRON	NBAS	ENSG00000151779.13	ENST00000281513.10:ENST00000442506.5:ENST00000441755.5	protein_coding	protein_coding	protein_coding	protein_coding	3	84	2	2.77917	3.0575650000000003	3.33596	0.00342993	0.00285651	0.0517761	0.0494641
chr19	29962148	29962247	7047753	0	+	0.363636	(0.35,0.378]	chr19	702663	37	INTRON	INTRON	URI1	ENSG00000105176.18	ENST00000360605.8:ENST00000570564.5:ENST00000574233.5:ENST00000392271.6:ENST00000574110.5:ENST00000574666.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	73	2	2.98607	3.0575599999999996	3.12905	0.00566312	9.86191e-4	0.0653997	0.0288537
chr19	8478501	8478600	7011113	0	+	0.585859	(0.57,1]	chr19	696197	39	INTRON	INTRON	HNRNPM	ENSG00000099783.12	ENST00000348943.7:ENST00000600092.5:ENST00000325495.9:ENST00000600806.5:ENST00000620401.4:ENST00000594907.5:ENST00000597270.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	50	2	2.55134	3.057515	3.56369	6.11018e-4	4.26536e-4	0.0223951	0.0189958
chr7	123735618	123735718	3632527	0	-	0.29	(0.28,0.32]	chr7	337581	260	INTRON	INTRON	WASL	ENSG00000106299.8	ENST00000223023.5	protein_coding	protein_coding	protein_coding	protein_coding	2	37	2	2.08149	3.0574700000000004	4.03345	0.0704058	0.031124	0.184298	0.143644
chr19	39435217	39435314	7182452	0	-	0.536082	(0.515,0.57]	chr19	726281	16	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	RPS16	ENSG00000105193.9	ENST00000251453.8:ENST00000339471.8:ENST00000599539.5:ENST00000601655.5:ENST00000601390.1:ENST00000599705.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	182	2	3.01524	3.057435	3.09963	9.06736e-5	7.18939e-6	0.00796627	0.00201767
chr2	235680937	235681036	1043207	0	+	0.515152	(0.476,0.515]	chr2	111228	95	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1:ENST00000402604.6:ENST00000409538.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	89	2	2.93859	3.057435	3.17628	0.00143107	3.6008e-4	0.0340925	0.0169207
chr6	32979555	32979646	2846539	0	+	0.285714	(0.28,0.32]	chr6	268488	5	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	BRD2	ENSG00000204256.14	ENST00000374825.9:ENST00000469132.2:ENST00000679179.1:ENST00000678778.1:ENST00000449085.4:ENST00000677331.1:ENST00000678250.1:ENST00000677085.1:ENST00000374831.8:ENST00000482914.5:ENST00000679099.1:ENST00000464592.6:ENST00000395287.5:ENST00000449025.5:ENST00000463639.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	129	2	2.10616	3.05733	4.0085	0.00457639	2.40059e-4	0.0622676	0.0142303
chr12	45897890	45897989	5124420	0	+	0.515152	(0.476,0.515]	chr12	483398	38	INTRON	INTRON	ARID2	ENSG00000189079.17	ENST00000334344.11:ENST00000479608.5:ENST00000444670.5:ENST00000457135.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	50	2	3.01197	3.057305	3.10264	0.00633162	0.00543163	0.0722266	0.0645052
chr8	6735811	6735910	3695279	0	+	0.363636	(0.35,0.378]	chr8	342847	28	INTRON	INTRON	AGPAT5	ENSG00000155189.12	ENST00000285518.11:ENST00000523234.5:ENST00000518327.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	73	2	2.63527	3.0572999999999997	3.47933	0.00443588	0.0015613	0.061054	0.0360352
chr20	47654504	47654603	7282550	0	+	0.585859	(0.57,1]	chr20	740590	12	UTR3	UTR3:EXON_MRNA	NCOA3	ENSG00000124151.19	ENST00000371998.8:ENST00000372004.7:ENST00000371997.3	protein_coding	protein_coding	protein_coding	protein_coding	11	117	2	2.9176	3.0572600000000003	3.19692	9.26062e-6	2.31159e-6	0.00235239	0.00095233100000000005
chr9	131262390	131262490	4362003	0	-	0.5	(0.476,0.515]	chr9	401064	3	SS5_PROX	SS5_PROX:INTRON	FAM78A	ENSG00000126882.13	ENST00000372269.7:ENST00000247295.4:ENST00000372271.4:ENST00000464831.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	91	2	2.2792	3.057155	3.83511	0.00299196	2.63754e-4	0.0503888	0.0149561
chr10	68463981	68464079	4639689	0	-	0.367347	(0.35,0.378]	chr10	426716	44	INTRON	INTRON	DNA2	ENSG00000138346.15	ENST00000358410.8:ENST00000551118.6:ENST00000399179.6:ENST00000399180.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	38	2	2.04224	3.0570500000000003	4.07186	0.0363073	0.0279478	0.138959	0.137011
chr11	9146655	9146748	4907858	0	-	0.516129	(0.515,0.57]	chr11	460006	10	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	DENND5A	ENSG00000184014.9	ENST00000328194.8:ENST00000681203.1:ENST00000530780.2:ENST00000680358.1:ENST00000679999.1:ENST00000679458.1:ENST00000531747.2:ENST00000680470.1:ENST00000680599.1:ENST00000680554.1:ENST00000679745.1:ENST00000679926.1:ENST00000680252.1:ENST00000681425.1:ENST00000681158.1:ENST00000679460.1:ENST00000681371.1:ENST00000680791.1:ENST00000679568.1:ENST00000679446.1:ENST00000680294.1:ENST00000680742.1:ENST00000680885.1:ENST00000680576.1:ENST00000530044.5:ENST00000527700.5:ENST00000524446.2:ENST00000526707.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	44	2	2.9114	3.0568999999999997	3.2024	0.00826019	0.00322022	0.0813266	0.0507087
chr3	197122195	197122294	1901726	0	-	0.262626	[0,0.28]	chr3	190571	23	INTRON	INTRON	DLG1	ENSG00000075711.21	ENST00000667157.1:ENST00000346964.6:ENST00000656428.1:ENST00000663148.1:ENST00000655488.1:ENST00000357674.9:ENST00000671185.1:ENST00000658701.1:ENST00000667104.1:ENST00000661336.1:ENST00000669565.1:ENST00000670455.1:ENST00000656087.1:ENST00000670366.1:ENST00000653583.1:ENST00000653795.1:ENST00000671246.1:ENST00000661453.1:ENST00000665728.1:ENST00000664564.1:ENST00000653331.1:ENST00000660432.1:ENST00000660898.1:ENST00000657381.1:ENST00000659221.1:ENST00000654737.1:ENST00000669332.1:ENST00000659716.1:ENST00000660553.1:ENST00000664991.1:ENST00000419354.5:ENST00000661440.1:ENST00000667971.1:ENST00000670935.1:ENST00000668578.1:ENST00000666007.1:ENST00000661229.1:ENST00000660237.1:ENST00000657098.1:ENST00000661013.1:ENST00000436682.6:ENST00000452595.5:ENST00000662727.1:ENST00000422288.6:ENST00000448528.6:ENST00000443183.5:ENST00000656944.1:ENST00000392382.6:ENST00000450955.5:ENST00000658155.1:ENST00000669714.1:ENST00000654733.1:ENST00000469073.2:ENST00000419227.5:ENST00000392381.7:ENST00000471733.5:ENST00000419553.6:ENST00000447466.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	55	2	1.49274	3.0567900000000003	4.62084	0.0592697	0.0313633	0.189982	0.13151
chr16	21446378	21446477	6460779	0	-	0.252525	[0,0.28]	chr16	623226	58	INTRON	INTRON	NPIPB3	ENSG00000169246.16	ENST00000545358.5:ENST00000543368.1:ENST00000544154.1	protein_coding	retained_intron	protein_coding	retained_intron:processed_transcript	5	132	2	2.35368	3.05678	3.75988	0.00315678	9.5295e-4	0.0515658	0.0282335
chr8	127944540	127944640	3861564	0	+	0.42	(0.408,0.44]	chr8	355467	12	INTRON	INTRON	PVT1	ENSG00000249859.13	ENST00000667305.1:ENST00000690350.1:ENST00000653522.1:ENST00000661830.1:ENST00000657289.1:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000656880.1:ENST00000660200.1:ENST00000657211.1:ENST00000653845.1:ENST00000517525.2:ENST00000651587.1:ENST00000692980.1:ENST00000666353.1:ENST00000654324.1:ENST00000657693.1:ENST00000666080.1:ENST00000667539.1:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000664293.1:ENST00000662410.1:ENST00000670795.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000654091.1:ENST00000657356.1:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000662061.1:ENST00000656491.1:ENST00000667714.1:ENST00000654105.1:ENST00000665721.1:ENST00000660438.1:ENST00000659326.1:ENST00000666842.1:ENST00000517790.2:ENST00000654369.1:ENST00000664995.1:ENST00000656532.1:ENST00000661988.1:ENST00000670714.1:ENST00000669951.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000656693.1:ENST00000668123.1:ENST00000666776.1:ENST00000664299.1:ENST00000659912.1:ENST00000670532.1:ENST00000660896.1:ENST00000523068.2:ENST00000519481.6:ENST00000669082.1:ENST00000671088.1:ENST00000670204.1:ENST00000652695.1:ENST00000517838.6:ENST00000663461.1:ENST00000513868.6:ENST00000670626.1	lncRNA	lncRNA	lncRNA	lncRNA	3	67	2	2.78289	3.05678	3.33067	0.0024459	0.0022785	0.0445752	0.0437013
chr15	90755832	90755930	6101302	0	+	0.5	(0.476,0.515]	chr15	580878	5	INTRON	INTRON	BLM	ENSG00000197299.13	ENST00000355112.8:ENST00000648453.1:ENST00000681142.1:ENST00000560509.5:ENST00000559724.5:ENST00000680772.1:ENST00000558599.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	89	2	2.87406	3.0567599999999997	3.23946	0.00188729	2.59571e-4	0.0391691	0.014326
chr1	207698988	207699088	304493	0	+	0.5	(0.476,0.515]	chr1	35029	4	SS3_PROX	SS3_PROX:INTRON	CR1L	ENSG00000197721.17	ENST00000508064.7:ENST00000530905.1:ENST00000294997.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	100	2	2.48551	3.05664	3.62777	0.00756632	4.68477e-5	0.0773151	0.00593131
chr21	45484987	45485085	7420326	0	+	0.459184	(0.44,0.476]	chr21	756483	18	INTRON	INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1:ENST00000355480.10:ENST00000359759.8	protein_coding	protein_coding	protein_coding	protein_coding	4	92	2	2.86452	3.056615	3.24871	0.00159222	3.52936e-4	0.0367961	0.0174637
chr1	109221792	109221891	179671	0	+	0.363636	(0.35,0.378]	chr1	19612	68	INTRON	INTRON	SARS1	ENSG00000031698.13	ENST00000234677.7:ENST00000477544.5:ENST00000369923.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	89	2	2.85764	3.056565	3.25549	0.00363602	4.6759e-4	0.0535085	0.0195867
chr7	138483095	138483195	3434869	0	+	0.58	(0.57,1]	chr7	319959	214	INTRON	INTRON	TRIM24	ENSG00000122779.18	ENST00000343526.9:ENST00000415680.6:ENST00000497516.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	44	2	2.55379	3.056495	3.5592	0.0015786	4.21089e-4	0.0362091	0.0183576
chrX	13355290	13355390	7622509	0	+	0.32	(0.28,0.32]	chrX	780353	136	INTRON	INTRON	LINC01203	ENSG00000226985.7	ENST00000669963.1:ENST00000661545.1:ENST00000659526.1:ENST00000656410.1:ENST00000661104.1:ENST00000456091.2:ENST00000655502.1:ENST00000671651.1:ENST00000656979.1:ENST00000656271.1:ENST00000661629.1:ENST00000661464.1:ENST00000668192.1:ENST00000665887.1:ENST00000659191.1:ENST00000667868.1:ENST00000653729.1:ENST00000656111.1	lncRNA	lncRNA	lncRNA	lncRNA	3	84	2	2.87934	3.056445	3.23355	0.004869	0.00189034	0.0607461	0.0402736
chr2	130462320	130462419	1228129	0	-	0.363636	(0.35,0.378]	chr2	130868	30	UTR3	UTR3:EXON_MRNA	POTEI	ENSG00000196834.14	ENST00000451531.7	protein_coding	protein_coding	protein_coding	protein_coding	12	259	2	2.25313	3.0564	3.85967	9.9587e-4	2.30192e-7	0.0288906	2.29753e-4
chr10	28620092	28620190	4414693	0	+	0.387755	(0.378,0.408]	chr10	407212	6	UTR3	UTR3:EXON_MRNA	WAC	ENSG00000095787.24	ENST00000680735.1:ENST00000375664.8:ENST00000628285.3:ENST00000681112.1:ENST00000679570.1:ENST00000354911.9:ENST00000347934.8:ENST00000420266.6:ENST00000679398.1:ENST00000442148.6:ENST00000414108.6:ENST00000679428.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	55	2	2.38873	3.05635	3.72397	0.0458857	3.23378e-4	0.149888	0.0159645
chr4	1887300	1887400	1910729	0	+	0.36	(0.35,0.378]	chr4	191707	154	INTRON	INTRON	NSD2	ENSG00000109685.19	ENST00000508803.6:ENST00000507820.5:ENST00000508355.5:ENST00000514045.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	135	2	2.96395	3.056325	3.1487	6.87038e-4	9.23639e-5	0.024008	0.0080362
chr16	89801011	89801108	6544661	0	-	0.402062	(0.378,0.408]	chr16	634579	10	INTRON	INTRON	FANCA	ENSG00000187741.16	ENST00000561667.2:ENST00000389301.8:ENST00000568369.6:ENST00000564475.6:ENST00000696275.1:ENST00000696287.1:ENST00000696286.1:ENST00000696274.1:ENST00000696291.1:ENST00000696276.1:ENST00000567205.2:ENST00000567284.7:ENST00000696277.1:ENST00000696292.1:ENST00000563767.2:ENST00000567621.6:ENST00000696288.1:ENST00000696293.1:ENST00000566889.5:ENST00000389302.7:ENST00000696294.1:ENST00000696295.1:ENST00000563673.5:ENST00000543736.5:ENST00000534992.5:ENST00000565582.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	83	2	2.50099	3.056285	3.61158	0.00245021	8.34292e-4	0.0457892	0.0266389
chr5	141588849	141588949	2739887	0	-	0.38	(0.378,0.408]	chr5	258168	2	INTRON	INTRON	DIAPH1	ENSG00000131504.18	ENST00000647433.1:ENST00000389054.8:ENST00000518047.5:ENST00000523100.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	83	2	2.50099	3.056285	3.61158	0.00245021	8.34292e-4	0.0457892	0.0266389
chr3	33848587	33848687	1394908	0	+	0.57	(0.515,0.57]	chr3	146115	26	INTRON	INTRON	PDCD6IP	ENSG00000170248.15	ENST00000457054.6:ENST00000648706.1:ENST00000307296.8:ENST00000465122.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	33	2	1.60221	3.0561049999999996	4.51	0.0581855	0.00809449	0.188704	0.0766625
chr7	6395137	6395237	3273230	0	+	0.55	(0.515,0.57]	chr7	304324	32	EXON_MRNA	EXON_MRNA:INTRON	RAC1	ENSG00000136238.19	ENST00000348035.9:ENST00000356142.4:ENST00000696666.1:ENST00000488373.5:ENST00000497741.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	33	2	1.60221	3.0561049999999996	4.51	0.0581855	0.00809449	0.188704	0.0766625
chr7	72918805	72918905	3330187	0	+	0.55	(0.515,0.57]	chr7	309571	46	INTRON	INTRON	POM121	ENSG00000196313.13	ENST00000627934.3:ENST00000395270.5	protein_coding	protein_coding	protein_coding	protein_coding	14	242	2	2.91813	3.056025	3.19392	4.87787e-6	3.79831e-6	0.0015065	0.00140425
chr7	848715	848791	3268804	0	+	0.578947	(0.57,1]	chr7	303586	1	SS5_PROX	SS5_PROX:INTRON	SUN1	ENSG00000164828.18	ENST00000452783.6:ENST00000389574.7:ENST00000401592.6:ENST00000413171.6:ENST00000405266.5:ENST00000340926.7:ENST00000425407.6:ENST00000450881.5:ENST00000419312.5:ENST00000429178.5:ENST00000433212.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	11	117	2	2.94085	3.05601	3.17117	7.71725e-6	2.86406e-6	0.00209437	0.00108437
chr10	1000376	1000476	4379117	0	+	0.53	(0.515,0.57]	chr10	403840	3	SS3_PROX	SS3_PROX:INTRON	GTPBP4	ENSG00000107937.19	ENST00000360803.9:ENST00000491635.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	128	2	2.72308	3.0559849999999997	3.38889	2.69455e-4	2.14587e-5	0.0145437	0.00377331
chr1	29083415	29083494	60672	0	+	0.405063	(0.378,0.408]	chr1	7757	3	INTRON	INTRON	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000373798.5:ENST00000649674.1:ENST00000343067.9:ENST00000349460.9:ENST00000646871.1:ENST00000488277.1:ENST00000490308.2:ENST00000650132.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	94	2	2.66643	3.0559700000000003	3.44551	0.00470023	8.68398e-5	0.0600108	0.00783027
chr1	28227327	28227426	409305	0	-	0.434343	(0.408,0.44]	chr1	49272	120	INTRON	INTRON	DNAJC8	ENSG00000126698.11	ENST00000263697.6:ENST00000489277.5:ENST00000482674.5:ENST00000488868.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	25	2	2.27698	3.05596	3.83494	0.0583528	0.0411442	0.167723	0.161534
chr10	35457559	35457659	4425718	0	+	0.44	(0.408,0.44]	chr10	407918	17	INTRON	INTRON	CCNY	ENSG00000108100.18	ENST00000374706.5:ENST00000490012.6:ENST00000493157.6:ENST00000374704.8:ENST00000265375.13:ENST00000339497.7:ENST00000492478.5:ENST00000470025.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	25	2	2.27698	3.05596	3.83494	0.0583528	0.0411442	0.167723	0.161534
chr10	96067584	96067684	4673499	0	-	0.43	(0.408,0.44]	chr10	430643	243	INTRON	INTRON	ENTPD1-AS1	ENSG00000226688.8	ENST00000669711.1:ENST00000416301.5:ENST00000451364.5:ENST00000671323.1:ENST00000656604.1:ENST00000452728.5:ENST00000684888.1:ENST00000454638.5:ENST00000668038.1:ENST00000686747.1:ENST00000693608.1:ENST00000458228.5:ENST00000691417.1:ENST00000427846.1	lncRNA	lncRNA	lncRNA	lncRNA	1	25	2	2.27698	3.05596	3.83494	0.0583528	0.0411442	0.167723	0.161534
chr12	104288430	104288525	5210020	0	+	0.410526	(0.408,0.44]	chr12	493195	1	SS3_PROX	SS3_PROX:INTRON	TXNRD1	ENSG00000198431.17	ENST00000525566.6:ENST00000526266.5:ENST00000503506.6:ENST00000526691.5:ENST00000531691.5:ENST00000526390.5:ENST00000531689.5:ENST00000529546.5:ENST00000529751.1:ENST00000526207.1:ENST00000528079.6:ENST00000526580.5:ENST00000529784.5:ENST00000524698.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	25	2	2.27698	3.05596	3.83494	0.0583528	0.0411442	0.167723	0.161534
chr16	30232443	30232539	6472424	0	-	0.427083	(0.408,0.44]	chr16	625538	2	INTRON	INTRON	NPIPB13	ENSG00000198064.14	ENST00000520915.5:ENST00000562937.5:ENST00000618637.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	25	2	2.27698	3.05596	3.83494	0.0583528	0.0411442	0.167723	0.161534
chr17	44060107	44060207	6778329	0	-	0.43	(0.408,0.44]	chr17	668123	195	INTRON	INTRON	LSM12	ENSG00000161654.10	ENST00000591247.6:ENST00000293406.8:ENST00000585388.2	protein_coding	protein_coding	protein_coding	protein_coding	1	25	2	2.27698	3.05596	3.83494	0.0583528	0.0411442	0.167723	0.161534
chr17	49038849	49038949	6625028	0	+	0.42	(0.408,0.44]	chr17	646632	4	SS5_PROX	SS5_PROX:INTRON	IGF2BP1	ENSG00000159217.10	ENST00000290341.8:ENST00000431824.2	protein_coding	protein_coding	protein_coding	protein_coding	1	25	2	2.27698	3.05596	3.83494	0.0583528	0.0411442	0.167723	0.161534
chr22	17823460	17823560	7548621	0	-	0.42	(0.408,0.44]	chr22	771577	4	SS3_PROX	SS3_PROX:INTRON	MICAL3	ENSG00000243156.9	ENST00000441493.7:ENST00000672019.1:ENST00000498573.5:ENST00000578984.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	25	2	2.27698	3.05596	3.83494	0.0583528	0.0411442	0.167723	0.161534
chr5	90567704	90567804	2420470	0	+	0.42	(0.408,0.44]	chr5	232765	84	INTRON	INTRON	ADGRV1	ENSG00000164199.18	ENST00000508842.5:ENST00000638316.1:ENST00000405460.9:ENST00000640109.1:ENST00000640281.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	25	2	2.27698	3.05596	3.83494	0.0583528	0.0411442	0.167723	0.161534
chr5	138864781	138864881	2498431	0	+	0.43	(0.408,0.44]	chr5	238750	367	INTRON	INTRON	CTNNA1	ENSG00000044115.21	ENST00000627109.2:ENST00000521724.5:ENST00000302763.12:ENST00000518825.5:ENST00000523275.5:ENST00000517534.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	25	2	2.27698	3.05596	3.83494	0.0583528	0.0411442	0.167723	0.161534
chr7	5056201	5056299	3271821	0	+	0.428571	(0.408,0.44]	chr7	304061	78	INTRON	INTRON	RBAK	ENSG00000146587.18	ENST00000353796.7:ENST00000396912.2	protein_coding	protein_coding	protein_coding	protein_coding	1	25	2	2.27698	3.05596	3.83494	0.0583528	0.0411442	0.167723	0.161534
chr8	143268372	143268470	3879416	0	+	0.428571	(0.408,0.44]	chr8	356334	5	INTRON	INTRON	GLI4	ENSG00000250571.7	ENST00000519876.1:ENST00000522479.1:ENST00000521682.5:ENST00000340042.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	25	2	2.27698	3.05596	3.83494	0.0583528	0.0411442	0.167723	0.161534
chr9	130783653	130783753	4214561	0	+	0.53	(0.515,0.57]	chr9	386427	688	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000393293.4	protein_coding	protein_coding	protein_coding	protein_coding	5	93	2	2.87449	3.0559200000000004	3.23735	4.10541e-4	2.1866e-4	0.0186083	0.0129728
chr11	118773542	118773642	5046191	0	-	0.4	(0.378,0.408]	chr11	475786	48	INTRON	INTRON	DDX6	ENSG00000110367.14	ENST00000534980.7:ENST00000620157.4:ENST00000526070.2:ENST00000525082.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	31	2	1.89621	3.05592	4.21563	0.0488044	0.0315429	0.173377	0.13151
chr18	12970552	12970652	6876386	0	+	0.4	(0.378,0.408]	chr18	681295	57	INTRON	INTRON	SEH1L	ENSG00000085415.16	ENST00000262124.15:ENST00000399892.7:ENST00000585730.5:ENST00000589446.5:ENST00000587761.1:ENST00000588251.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	31	2	1.89621	3.05592	4.21563	0.0488044	0.0315429	0.173377	0.13151
chr6	149631360	149631460	3245948	0	-	0.39	(0.378,0.408]	chr6	301588	77	INTRON	INTRON	KATNA1	ENSG00000186625.14	ENST00000335643.12:ENST00000367411.7:ENST00000335647.9:ENST00000470620.1:ENST00000444282.5:ENST00000420200.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	31	2	1.89621	3.05592	4.21563	0.0488044	0.0315429	0.173377	0.13151
chr7	92120964	92121061	3568874	0	-	0.494845	(0.476,0.515]	chr7	332453	20	INTRON	INTRON	CYP51A1:ENSG00000289027	ENSG00000001630.18:ENSG00000289027.1	ENST00000691309.1:ENST00000003100.13:ENST00000692281.1:ENST00000693096.1:ENST00000450723.5:ENST00000422867.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	53	2	2.40608	3.0558050000000003	3.70553	0.0425709	3.44823e-4	0.148082	0.0165103
chr12	124847987	124848087	5446426	0	-	0.44	(0.408,0.44]	chr12	521285	299	INTRON	INTRON	SCARB1	ENSG00000073060.17	ENST00000339570.9:ENST00000261693.11:ENST00000679605.1:ENST00000681686.1:ENST00000680926.1:ENST00000680556.1:ENST00000680982.1:ENST00000680596.1:ENST00000415380.6:ENST00000681117.1:ENST00000538291.5:ENST00000546215.5:ENST00000535005.5:ENST00000539320.3:ENST00000545493.1:ENST00000541661.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	68	2	2.55103	3.0557999999999996	3.56057	0.00587353	9.67143e-4	0.0690758	0.0282401
chr3	42614675	42614774	1406112	0	+	0.262626	[0,0.28]	chr3	147655	36	INTRON	INTRON	NKTR	ENSG00000114857.19	ENST00000468735.6:ENST00000487466.5:ENST00000429888.5:ENST00000232978.13:ENST00000442970.5:ENST00000445842.1:ENST00000478488.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	96	2	2.96015	3.0555849999999998	3.15102	0.00767596	0.00161799	0.0753665	0.0369252
chr5	145743370	145743470	2745715	0	-	0.34	(0.32,0.35]	chr5	258674	387	INTRON	INTRON	PRELID2	ENSG00000186314.12	ENST00000510259.5:ENST00000510594.1:ENST00000515161.1	protein_coding	processed_transcript	protein_coding	processed_transcript	4	93	2	2.4722	3.0555849999999998	3.63897	0.00307237	9.34231e-4	0.0509893	0.0280484
chr7	127911801	127911901	3405015	0	+	0.41	(0.408,0.44]	chr7	318161	66	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000465900.5:ENST00000486037.1:ENST00000484767.5:ENST00000492840.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	67	2	2.73941	3.0555149999999998	3.37162	0.002744	0.00208674	0.0484022	0.0411801
chr10	22322570	22322670	4406619	0	+	0.42	(0.408,0.44]	chr10	406646	4	SS5_PROX	SS5_PROX:INTRON	COMMD3-BMI1:BMI1	ENSG00000269897.5:ENSG00000168283.14	ENST00000475460.6:ENST00000602390.5:ENST00000489125.2:ENST00000463409.6:ENST00000417470.1:ENST00000602395.1:ENST00000376663.8:ENST00000602523.1:ENST00000456675.2:ENST00000442508.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	68	2	2.31565	3.055495	3.79534	0.0154718	2.17043e-4	0.100909	0.0129235
chr17	39272328	39272426	6765351	0	-	0.397959	(0.378,0.408]	chr17	665443	11	INTRON	INTRON	FBXL20	ENSG00000108306.13	ENST00000264658.11:ENST00000583610.5:ENST00000394294.7:ENST00000577399.5	protein_coding	protein_coding	protein_coding	protein_coding	4	85	2	2.87389	3.055485	3.23708	0.00365053	4.01435e-4	0.0535094	0.0179994
chrX	154747359	154747459	7915283	0	-	0.31	(0.28,0.32]	chrX	806107	307	INTRON	INTRON	GAB3	ENSG00000160219.12	ENST00000496390.5:ENST00000424127.3:ENST00000369575.7:ENST00000369568.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	63	2	3.02632	3.05547	3.08462	0.0078976	0.0071944	0.076155	0.0756118
chr1	207763853	207763952	305021	0	+	0.393939	(0.378,0.408]	chr1	35105	7	INTRON	INTRON	CD46	ENSG00000117335.21	ENST00000695779.1:ENST00000695777.1:ENST00000695778.1:ENST00000496723.2:ENST00000695782.1:ENST00000695781.1:ENST00000695780.1:ENST00000636114.2:ENST00000367042.6:ENST00000322875.8:ENST00000322918.9:ENST00000354848.5:ENST00000357714.5:ENST00000358170.6:ENST00000367041.5:ENST00000367047.5:ENST00000695783.1:ENST00000695784.1:ENST00000469535.5:ENST00000360212.6:ENST00000480003.5:ENST00000695785.1:ENST00000464082.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	84	2	2.20712	3.055415	3.90371	0.00978751	1.30398e-4	0.0835427	0.00983066
chr2	36923112	36923212	1094168	0	-	0.46	(0.44,0.476]	chr2	117215	66	INTRON	INTRON	STRN	ENSG00000115808.12	ENST00000263918.9:ENST00000379213.3	protein_coding	protein_coding	protein_coding	protein_coding	3	38	2	1.87325	3.0553999999999997	4.23755	0.0265709	0.0263357	0.134088	0.122221
chr1	211946306	211946406	631473	0	-	0.49	(0.476,0.515]	chr1	74681	3	SS5_PROX	SS5_PROX:INTRON	INTS7	ENSG00000143493.13	ENST00000469606.5:ENST00000366994.8:ENST00000366993.7:ENST00000366992.7:ENST00000440600.6:ENST00000612340.1:ENST00000475798.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	24	2	2.13854	3.055275	3.97201	0.0776563	0.030904	0.196285	0.143385
chr1	247305774	247305874	684193	0	-	0.49	(0.476,0.515]	chr1	80215	41	INTRON	INTRON	ZNF496	ENSG00000162714.13	ENST00000294753.8:ENST00000462139.1:ENST00000682384.1:ENST00000461277.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	24	2	2.13854	3.055275	3.97201	0.0776563	0.030904	0.196285	0.143385
chr15	90227171	90227238	6098378	0	+	0.492537	(0.476,0.515]	chr15	580483	3	SS3_PROX	SS3_PROX:INTRON	SEMA4B	ENSG00000185033.15	ENST00000332496.10:ENST00000411539.7:ENST00000560089.5:ENST00000558065.1:ENST00000559074.5:ENST00000559983.5:ENST00000559247.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	24	2	2.13854	3.055275	3.97201	0.0776563	0.030904	0.196285	0.143385
chr19	53182202	53182299	7211167	0	-	0.494845	(0.476,0.515]	chr19	731966	17	EXON_LNCRNA	EXON_LNCRNA:INTRON	ZNF665	ENSG00000197497.11	ENST00000396424.5:ENST00000600412.1:ENST00000650736.1:ENST00000597544.5:ENST00000596373.1:ENST00000598440.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	24	2	2.13854	3.055275	3.97201	0.0776563	0.030904	0.196285	0.143385
chr2	3451653	3451751	686470	0	+	0.489796	(0.476,0.515]	chr2	80505	18	INTRON	INTRON	TRAPPC12	ENSG00000171853.16	ENST00000382110.6:ENST00000324266.10:ENST00000441983.5:ENST00000417243.5:ENST00000469147.5:ENST00000441099.5:ENST00000433382.5:ENST00000462983.5:ENST00000479897.5:ENST00000415624.5:ENST00000479955.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	24	2	2.13854	3.055275	3.97201	0.0776563	0.030904	0.196285	0.143385
chr2	44177551	44177651	764643	0	+	0.51	(0.476,0.515]	chr2	86683	79	INTRON	INTRON	PPM1B	ENSG00000138032.21	ENST00000419807.5:ENST00000282412.9:ENST00000378540.8:ENST00000378551.6:ENST00000409432.7:ENST00000409486.6:ENST00000345249.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	24	2	2.13854	3.055275	3.97201	0.0776563	0.030904	0.196285	0.143385
chr2	169627183	169627283	906911	0	+	0.48	(0.476,0.515]	chr2	100061	121	INTRON	INTRON	PPIG	ENSG00000138398.17	ENST00000678088.1:ENST00000677392.1:ENST00000433207.6:ENST00000679324.1:ENST00000414307.6:ENST00000676508.1:ENST00000260970.8:ENST00000678695.1:ENST00000409714.7:ENST00000530152.5:ENST00000677750.1:ENST00000678721.1:ENST00000462903.6:ENST00000676756.1:ENST00000679107.1:ENST00000678499.1:ENST00000678638.1:ENST00000448752.7:ENST00000417938.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	24	2	2.13854	3.055275	3.97201	0.0776563	0.030904	0.196285	0.143385
chr2	197424973	197425073	1306923	0	-	0.51	(0.476,0.515]	chr2	136747	6	INTRON	INTRON	SF3B1	ENSG00000115524.17	ENST00000652026.1:ENST00000652738.1:ENST00000335508.11:ENST00000470268.2:ENST00000409915.8:ENST00000414963.2:ENST00000487698.5:ENST00000414174.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	24	2	2.13854	3.055275	3.97201	0.0776563	0.030904	0.196285	0.143385
chr5	131631863	131631963	2719139	0	-	0.5	(0.476,0.515]	chr5	255626	268	INTRON	INTRON	RAPGEF6	ENSG00000158987.22	ENST00000509018.6:ENST00000507093.5:ENST00000296859.10:ENST00000627212.2:ENST00000308008.10:ENST00000515170.5:ENST00000510071.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	24	2	2.13854	3.055275	3.97201	0.0776563	0.030904	0.196285	0.143385
chr5	145591108	145591208	2744192	0	-	0.5	(0.476,0.515]	chr5	258670	1174	INTRON	INTRON	PRELID2	ENSG00000186314.12	ENST00000510259.5	protein_coding	processed_transcript	protein_coding	processed_transcript	1	24	2	2.13854	3.055275	3.97201	0.0776563	0.030904	0.196285	0.143385
chr6	142172015	142172114	2974578	0	+	0.515152	(0.476,0.515]	chr6	279088	12	INTRON	INTRON	VTA1	ENSG00000009844.16	ENST00000452973.6:ENST00000620996.4:ENST00000367621.1:ENST00000367630.9:ENST00000491881.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	24	2	2.13854	3.055275	3.97201	0.0776563	0.030904	0.196285	0.143385
chr7	4748685	4748785	3270580	0	+	0.48	(0.476,0.515]	chr7	303890	73	INTRON	INTRON	FOXK1	ENSG00000164916.11	ENST00000328914.5:ENST00000460979.2	protein_coding	protein_coding	protein_coding	protein_coding	1	24	2	2.13854	3.055275	3.97201	0.0776563	0.030904	0.196285	0.143385
chr7	105098646	105098745	3375496	0	+	0.50505	(0.476,0.515]	chr7	315967	70	INTRON	INTRON	KMT2E	ENSG00000005483.22	ENST00000257745.9:ENST00000334884.9:ENST00000311117.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	24	2	2.13854	3.055275	3.97201	0.0776563	0.030904	0.196285	0.143385
chr7	105109979	105110079	3375623	0	+	0.49	(0.476,0.515]	chr7	316013	3	SS3_PROX	SS3_PROX:INTRON	KMT2E	ENSG00000005483.22	ENST00000257745.9:ENST00000334884.9:ENST00000311117.8:ENST00000478079.1:ENST00000473063.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	24	2	2.13854	3.055275	3.97201	0.0776563	0.030904	0.196285	0.143385
chr22	21813443	21813543	7560844	0	-	0.53	(0.515,0.57]	chr22	773388	52	INTRON	INTRON	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	4	77	2	3.04798	3.055185	3.06239	6.62949e-4	5.9198e-4	0.0234815	0.0221485
chr1	47250736	47250835	445457	0	-	0.494949	(0.476,0.515]	chr1	53977	7	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	STIL	ENSG00000123473.17	ENST00000360380.7:ENST00000371877.8:ENST00000337817.10:ENST00000682940.1:ENST00000683977.1:ENST00000682977.1:ENST00000396221.6:ENST00000684618.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	147	2	2.83096	3.05516	3.27936	2.55385e-4	3.89817e-5	0.0148225	0.00504677
chr1	11743532	11743632	25320	0	+	0.48	(0.476,0.515]	chr1	2739	69	INTRON	INTRON	AGTRAP	ENSG00000177674.16	ENST00000376637.7:ENST00000476512.5:ENST00000400895.6:ENST00000494437.1:ENST00000314340.10:ENST00000491346.5:ENST00000376629.8:ENST00000376627.6:ENST00000452018.6:ENST00000510878.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	53	2	2.65268	3.054895	3.45711	0.0201975	0.00140905	0.121243	0.0340865
chr19	49449078	49449165	7201035	0	-	0.448276	(0.44,0.476]	chr19	730407	2	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	PIH1D1	ENSG00000104872.11	ENST00000262265.10:ENST00000596916.5:ENST00000596651.5:ENST00000600875.5:ENST00000598889.5:ENST00000596049.5:ENST00000601807.5:ENST00000601053.5:ENST00000595516.5:ENST00000599366.5:ENST00000597415.5:ENST00000593900.5:ENST00000595074.1:ENST00000599791.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	86	2	2.74733	3.05482	3.36231	0.00161678	9.96884e-4	0.0369204	0.0288906
chr20	47351118	47351209	7349461	0	-	0.384615	(0.378,0.408]	chr20	749362	8	INTRON	INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000435836.5:ENST00000446894.5	protein_coding	protein_coding	protein_coding	protein_coding	2	52	2	2.72993	3.054815	3.3797	0.0188736	0.00154501	0.108861	0.0362716
chr6	35835205	35835303	3087942	0	-	0.571429	(0.57,1]	chr6	288803	24	UTR3	UTR3:EXON_MRNA	SRPK1	ENSG00000096063.16	ENST00000373825.7:ENST00000423325.6:ENST00000346162.10:ENST00000361690.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	12	128	2	2.9547	3.054745	3.15479	6.44256e-6	1.33809e-6	0.00178942	7.50494e-4
chr13	95110735	95110835	5637947	0	-	0.48	(0.476,0.515]	chr13	537050	142	INTRON	INTRON	ABCC4	ENSG00000125257.16	ENST00000645237.2:ENST00000643051.1:ENST00000643842.1:ENST00000646439.1:ENST00000644880.1:ENST00000643816.1:ENST00000536256.3:ENST00000643556.1:ENST00000629385.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	40	2	1.58335	3.054675	4.526	0.0640461	0.00699701	0.177882	0.0754576
chr7	119846139	119846239	3629802	0	-	0.22	[0,0.28]	chr7	337335	449	INTRON	INTRON	LINC02476	ENSG00000225546.6	ENST00000660268.1:ENST00000431071.5:ENST00000426413.2	lncRNA	lncRNA	lncRNA	lncRNA	8	173	2	2.05705	3.0545799999999996	4.05211	0.00339737	2.98802e-4	0.0536884	0.0160416
chr17	70072426	70072526	6828172	0	-	0.24	[0,0.28]	chr17	675005	184	INTRON	INTRON	ENSG00000230258	ENSG00000230258.6	ENST00000435112.5:ENST00000587325.1	lncRNA	lncRNA	lncRNA	lncRNA	2	72	2	2.59548	3.054545	3.51361	0.0346067	0.00142208	0.136649	0.0346633
chr2	214809011	214809111	1326182	0	-	0.6	(0.57,1]	chr2	138640	2	SS5_PROX	SS5_PROX:INTRON	BARD1	ENSG00000138376.11	ENST00000260947.9:ENST00000617164.5:ENST00000619009.5:ENST00000613374.5:ENST00000613706.5:ENST00000421162.2:ENST00000613192.2:ENST00000620057.4:ENST00000455743.5:ENST00000471787.1:ENST00000479904.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	48	2	2.95123	3.05449	3.15775	8.39007e-4	2.72513e-4	0.0263691	0.0151392
chr1	29046743	29046842	60291	0	+	0.191919	[0,0.28]	chr1	7705	54	INTRON	INTRON	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000647918.1:ENST00000646800.1:ENST00000644342.1:ENST00000646189.1:ENST00000482464.6:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000646260.1:ENST00000373798.5:ENST00000644600.1:ENST00000649674.1:ENST00000643173.1:ENST00000343067.9:ENST00000644780.1:ENST00000650265.1:ENST00000648181.1:ENST00000643604.1:ENST00000648891.1:ENST00000373797.2:ENST00000349460.9:ENST00000645184.1:ENST00000645111.1:ENST00000643302.1:ENST00000645999.1:ENST00000642643.1:ENST00000636666.1:ENST00000644848.1:ENST00000644470.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	148	2	2.39294	3.0544849999999997	3.71603	0.0015688	0.0011243	0.0365659	0.0306963
chr21	43983292	43983392	7414988	0	+	0.42	(0.408,0.44]	chr21	755778	10	UTR3	UTR3:EXON_MRNA	AGPAT3	ENSG00000160216.21	ENST00000291572.13:ENST00000398061.5:ENST00000327505.6:ENST00000398063.6:ENST00000398058.5	protein_coding	protein_coding	protein_coding	protein_coding	2	52	2	2.82042	3.0544700000000002	3.28852	0.0120121	0.00287185	0.0962115	0.0474836
chr5	308395	308495	2312991	0	+	0.61	(0.57,1]	chr5	223726	3	EXON_MRNA	EXON_MRNA:INTRON	PDCD6	ENSG00000249915.9	ENST00000614778.4:ENST00000618970.4:ENST00000513582.5:ENST00000264933.9:ENST00000505221.5:ENST00000507528.5:ENST00000505526.1:ENST00000507473.1:ENST00000511482.1:ENST00000512466.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	44	2	2.24434	3.05447	3.8646	0.00677343	8.0672e-5	0.074225	0.00804467
chr14	96557011	96557109	5810744	0	+	0.489796	(0.476,0.515]	chr14	550973	2	INTRON	INTRON	PAPOLA	ENSG00000090060.19	ENST00000216277.13:ENST00000553689.5:ENST00000392990.6:ENST00000555626.5:ENST00000556459.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	108	2	2.93859	3.05445	3.17031	0.00143107	7.50511e-5	0.0340925	0.007252
chr21	33545712	33545812	7397450	0	+	0.41	(0.408,0.44]	chr21	753505	1	SS3_PROX	SS3_PROX:INTRON	SON	ENSG00000159140.22	ENST00000356577.10:ENST00000381692.6:ENST00000475072.1:ENST00000695559.1:ENST00000455528.5:ENST00000300278.8:ENST00000381679.8:ENST00000492229.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	111	2	2.29777	3.05435	3.81093	0.0067764	9.03544e-6	0.0711802	0.00216015
chr8	140945370	140945469	4079516	0	-	0.484848	(0.476,0.515]	chr8	370572	109	INTRON	INTRON	PTK2	ENSG00000169398.20	ENST00000696786.1:ENST00000522684.5:ENST00000395218.3:ENST00000521059.5:ENST00000519993.5:ENST00000340930.7:ENST00000519419.5:ENST00000524357.5:ENST00000521791.5:ENST00000523067.5:ENST00000520828.5:ENST00000519881.5:ENST00000520892.5:ENST00000523803.5:ENST00000521907.5:ENST00000517453.5:ENST00000520045.5:ENST00000521332.5:ENST00000524040.5:ENST00000523679.1:ENST00000524257.5:ENST00000523797.1:ENST00000519635.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	108	2	2.69104	3.054255	3.41747	9.94264e-4	1.45317e-4	0.0290397	0.0110154
chr19	10192835	10192935	7134859	0	-	0.53	(0.515,0.57]	chr19	719261	84	INTRON	INTRON	DNMT1	ENSG00000130816.17	ENST00000340748.8:ENST00000359526.9:ENST00000592705.5:ENST00000679103.1:ENST00000677634.1:ENST00000676820.1:ENST00000677250.1:ENST00000677013.1:ENST00000677685.1:ENST00000676610.1:ENST00000678804.1:ENST00000679313.1:ENST00000677946.1:ENST00000586988.5:ENST00000588952.5:ENST00000588118.5:ENST00000592342.5:ENST00000592054.5:ENST00000586800.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	46	2	2.65834	3.05424	3.45014	0.0187418	0.00116948	0.117523	0.0312127
chr1	28506903	28506995	57176	0	+	0.521739	(0.515,0.57]	chr1	7378	7	EXON_MRNA	EXON_MRNA:INTRON	RCC1:SNHG3	ENSG00000180198.17:ENSG00000242125.3	ENST00000398958.6:ENST00000649185.1:ENST00000413987.1:ENST00000427469.5:ENST00000683442.1:ENST00000447507.1:ENST00000434290.6:ENST00000373833.10:ENST00000437681.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	22	394	2	2.61533	3.05422	3.49311	1.09349e-5	4.61642e-8	0.00243744	8.56108e-5
chr1	52886655	52886755	105356	0	+	0.46	(0.44,0.476]	chr1	13781	3	SS3_PROX	SS3_PROX:INTRON	ZYG11A	ENSG00000203995.10	ENST00000371532.5:ENST00000612017.4:ENST00000371528.2	protein_coding	protein_coding	protein_coding	protein_coding	3	67	2	2.59888	3.05421	3.50954	0.00487719	0.00116647	0.0640618	0.0312127
chr1	162798396	162798492	238816	0	+	0.395833	(0.378,0.408]	chr1	28792	6	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	HSD17B7	ENSG00000132196.16	ENST00000254521.8:ENST00000485405.5:ENST00000463037.5:ENST00000466176.5:ENST00000649629.1:ENST00000484251.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	39	2	1.89251	3.05407	4.21563	0.0315429	0.0251428	0.133404	0.13151
chr17	75369691	75369791	6837438	0	-	0.48	(0.476,0.515]	chr17	675716	365	INTRON	INTRON	GRB2	ENSG00000177885.15	ENST00000316615.9:ENST00000316804.10:ENST00000392562.5:ENST00000392564.5:ENST00000392563.5:ENST00000648046.1:ENST00000578961.5:ENST00000582582.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	80	2	2.3346	3.05397	3.77334	0.00494807	3.52709e-4	0.0646039	0.0174637
chr12	51059929	51060028	5140458	0	+	0.373737	(0.35,0.378]	chr12	484808	6	UTR3	UTR3:EXON_MRNA	LETMD1	ENSG00000050426.16	ENST00000547318.5:ENST00000262055.9:ENST00000547555.5:ENST00000418425.6:ENST00000547008.5:ENST00000547877.5:ENST00000380135.7:ENST00000550100.5:ENST00000552739.5:ENST00000552645.5:ENST00000623495.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:TEC	7	161	2	3.03729	3.053915	3.07054	2.57526e-4	5.97813e-5	0.0148796	0.00636382
chr3	50012911	50013011	1423689	0	+	0.5	(0.476,0.515]	chr3	149994	130	INTRON	INTRON	RBM6	ENSG00000004534.15	ENST00000442092.5:ENST00000443081.5:ENST00000419610.5:ENST00000441115.5:ENST00000422955.5:ENST00000454079.5:ENST00000266022.9:ENST00000425608.5:ENST00000434592.5:ENST00000464013.5:ENST00000483350.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	107	2	2.74942	3.053745	3.35807	9.59979e-4	1.37324e-4	0.0282401	0.0100829
chr1	45611812	45611908	93490	0	+	0.364583	(0.35,0.378]	chr1	12614	14	EXON_MRNA	EXON_MRNA:INTRON	NASP	ENSG00000132780.17	ENST00000437901.6:ENST00000537798.5:ENST00000437362.6:ENST00000350030.8:ENST00000527359.5:ENST00000453748.5:ENST00000525515.5:ENST00000528238.5:ENST00000372052.8:ENST00000351223.7:ENST00000530073.5:ENST00000481782.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	117	2	3.0078	3.05369	3.09958	8.54875e-4	2.11734e-4	0.0267428	0.0127388
chr2	47890715	47890814	1115966	0	-	0.535354	(0.515,0.57]	chr2	119694	21	INTRON	INTRON	FBXO11	ENSG00000138081.22	ENST00000684712.1:ENST00000682451.1:ENST00000403359.8:ENST00000683894.1:ENST00000681999.1:ENST00000682975.1:ENST00000684085.1:ENST00000492225.5:ENST00000424163.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	13	222	2	2.51027	3.0536399999999997	3.59701	1.2572e-4	2.17282e-7	0.0101179	2.21367e-4
chr1	35388709	35388809	69507	0	+	0.53	(0.515,0.57]	chr1	8790	4	SS3_PROX	SS3_PROX:INTRON	ZMYM4	ENSG00000146463.12	ENST00000314607.11:ENST00000457946.1	protein_coding	protein_coding	protein_coding	protein_coding	8	128	2	2.07244	3.053635	4.03483	0.00293638	1.36371e-6	0.0483234	6.88249e-4
chr15	63733934	63734030	6199885	0	-	0.447917	(0.44,0.476]	chr15	591364	4	INTRON	INTRON	HERC1	ENSG00000103657.14	ENST00000443617.7:ENST00000561400.1	protein_coding	protein_coding	protein_coding	protein_coding	3	67	2	2.55649	3.053585	3.55068	0.00670547	7.06861e-4	0.0707084	0.0241881
chr17	50391997	50392097	6795096	0	-	0.49	(0.476,0.515]	chr17	670744	2	SS5_PROX	SS5_PROX:INTRON	LRRC59	ENSG00000108829.10	ENST00000225972.8	protein_coding	protein_coding	protein_coding	protein_coding	3	67	2	2.53671	3.053555	3.5704	0.00624027	8.75056e-4	0.0718843	0.0270926
chr1	155699537	155699637	229617	0	+	0.32	(0.28,0.32]	chr1	26994	99	INTRON	INTRON	DAP3	ENSG00000132676.16	ENST00000471642.6:ENST00000471214.5:ENST00000343043.7:ENST00000368336.10:ENST00000535183.5:ENST00000421487.6:ENST00000496863.5:ENST00000465375.5:ENST00000462002.5:ENST00000470830.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	36	2	1.96475	3.053445	4.14214	0.0579756	0.0428385	0.167723	0.162255
chr2	61298010	61298108	1128791	0	-	0.285714	(0.28,0.32]	chr2	121346	7	INTRON	INTRON	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000472706.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	36	2	1.96475	3.053445	4.14214	0.0579756	0.0428385	0.167723	0.162255
chr7	152070298	152070398	3449957	0	+	0.31	(0.28,0.32]	chr7	322435	422	INTRON	INTRON	GALNT11	ENSG00000178234.13	ENST00000430044.7:ENST00000482812.1:ENST00000431668.1:ENST00000446096.5:ENST00000447778.5:ENST00000423337.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	36	2	1.96475	3.053445	4.14214	0.0579756	0.0428385	0.167723	0.162255
chr8	39045801	39045901	3738786	0	+	0.32	(0.28,0.32]	chr8	347527	4	SS3_PROX	SS3_PROX:INTRON	ADAM9	ENSG00000168615.13	ENST00000678474.1:ENST00000676765.1:ENST00000676936.1:ENST00000677908.1:ENST00000677004.1:ENST00000677165.1:ENST00000481058.2:ENST00000676643.1:ENST00000676669.1:ENST00000679268.1:ENST00000677582.1:ENST00000676617.1:ENST00000677137.1:ENST00000678540.1:ENST00000677359.1:ENST00000678730.1:ENST00000487273.7:ENST00000678253.1:ENST00000676489.1:ENST00000379917.7:ENST00000468065.5:ENST00000481873.7:ENST00000676919.1:ENST00000678863.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	36	2	1.96475	3.053445	4.14214	0.0579756	0.0428385	0.167723	0.162255
chr3	186970883	186970982	1586580	0	+	0.353535	(0.35,0.378]	chr3	164332	66	INTRON	INTRON	ST6GAL1	ENSG00000073849.16	ENST00000676786.1:ENST00000169298.8:ENST00000457772.6:ENST00000455441.5:ENST00000427315.5:ENST00000677292.1:ENST00000458216.5:ENST00000430309.5:ENST00000417392.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	73	2	2.52395	3.053405	3.58286	0.00824736	6.77448e-4	0.0773378	0.0236287
chr3	149043487	149043586	1840554	0	-	0.353535	(0.35,0.378]	chr3	185101	8	INTRON	INTRON	HLTF	ENSG00000071794.16	ENST00000310053.10:ENST00000465259.5:ENST00000392912.6:ENST00000494055.5:ENST00000467858.1	protein_coding	protein_coding	protein_coding	protein_coding	2	54	2	2.89003	3.0534	3.21677	0.0122391	0.00313804	0.0910127	0.0514466
chr5	31462635	31462735	2596289	0	-	0.37	(0.35,0.378]	chr5	246594	106	INTRON	INTRON	DROSHA	ENSG00000113360.17	ENST00000344624.8:ENST00000511367.6:ENST00000513349.5:ENST00000505601.5:ENST00000507174.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	54	2	2.89003	3.0534	3.21677	0.0122391	0.00313804	0.0910127	0.0514466
chr10	131943080	131943177	4537293	0	+	0.412371	(0.408,0.44]	chr10	418888	19	INTRON	INTRON	PPP2R2D	ENSG00000175470.20	ENST00000455566.6:ENST00000616467.4:ENST00000482010.6:ENST00000470416.5:ENST00000517472.1:ENST00000490777.3:ENST00000649083.1:ENST00000472664.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	138	2	2.17484	3.0533	3.93176	0.003472	4.09816e-6	0.052042	0.00134432
chr4	152495410	152495509	2274683	0	-	0.323232	(0.32,0.35]	chr4	221124	56	INTRON	INTRON	FBXW7	ENSG00000109670.16	ENST00000281708.10:ENST00000603548.6:ENST00000604872.6:ENST00000647166.1:ENST00000643834.1:ENST00000642901.1	protein_coding	protein_coding	protein_coding	protein_coding	3	81	2	2.35591	3.05321	3.75051	0.0128129	5.8762e-4	0.0990564	0.0224695
chr1	66962294	66962391	139823	0	+	0.340206	(0.32,0.35]	chr1	15682	22	INTRON	INTRON	MIER1	ENSG00000198160.15	ENST00000355977.10:ENST00000371018.7:ENST00000357692.6:ENST00000371016.5:ENST00000371014.5:ENST00000401041.6:ENST00000355356.3:ENST00000401042.7	protein_coding	protein_coding	protein_coding	protein_coding	3	42	2	1.83315	3.0530749999999998	4.273	0.0368357	0.0313348	0.144381	0.138959
chr11	70271906	70271994	4820421	0	+	0.443182	(0.44,0.476]	chr11	449376	1	UTR5	UTR5:EXON_MRNA:SS3_PROX:INTRON	PPFIA1	ENSG00000131626.19	ENST00000253925.12:ENST00000389547.7:ENST00000532504.5:ENST00000530746.1:ENST00000532024.1:ENST00000648755.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	81	2	2.79598	3.053045	3.31011	0.00259023	5.82325e-4	0.0452934	0.0219289
chr1	65057654	65057754	475466	0	-	0.44	(0.408,0.44]	chr1	57242	5	PRIMIRNA	PRIMIRNA:INTRON	JAK1:MIR3671	ENSG00000162434.13:ENSG00000265996.1	ENST00000672434.1:ENST00000671954.1:ENST00000673502.1:ENST00000672751.1:ENST00000672099.1:ENST00000580455.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:primary_miRNA	3	67	2	2.69457	3.0530049999999997	3.41144	0.00331036	0.00178336	0.0527031	0.0379201
chr19	21849413	21849513	7159770	0	-	0.44	(0.408,0.44]	chr19	723805	1	SS5_PROX	SS5_PROX:INTRON	ZNF43	ENSG00000198521.12	ENST00000357491.10:ENST00000594012.5:ENST00000595461.5:ENST00000598381.5:ENST00000596899.1:ENST00000599414.5:ENST00000594312.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	38	2	1.8749	3.05293	4.23096	0.0278028	0.0264246	0.133676	0.123904
chr6	163439501	163439601	3031953	0	+	0.43	(0.408,0.44]	chr6	282563	101	INTRON	INTRON	QKI	ENSG00000112531.17	ENST00000361758.8:ENST00000453779.6:ENST00000275262.11:ENST00000392127.6:ENST00000361752.8:ENST00000361195.6:ENST00000424802.7:ENST00000545607.5:ENST00000544436.5:ENST00000537041.5:ENST00000537124.5:ENST00000545346.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	38	2	1.8749	3.05293	4.23096	0.0278028	0.0264246	0.133676	0.123904
chr8	42541451	42541512	3942584	0	-	0.704918	(0.57,1]	chr8	361343	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	SLC20A2	ENSG00000168575.10	ENST00000342228.7:ENST00000520179.5:ENST00000518384.1:ENST00000524237.1:ENST00000523340.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	15	161	2	2.68839	3.0529	3.41741	1.40054e-5	5.14988e-8	0.00279368	9.0631e-5
chr21	37078031	37078130	7404868	0	+	0.424242	(0.408,0.44]	chr21	754521	42	INTRON	INTRON	TTC3	ENSG00000182670.14	ENST00000492275.6:ENST00000418766.6:ENST00000485402.5:ENST00000450533.6:ENST00000438055.5:ENST00000696812.1:ENST00000696811.1:ENST00000463216.6:ENST00000481605.6:ENST00000540756.5:ENST00000494243.5:ENST00000399010.5:ENST00000411496.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	183	2	3.05138	3.05283	3.05428	2.31493e-4	8.67424e-6	0.0139549	0.00211418
chr1	226399973	226400070	648301	0	-	0.340206	(0.32,0.35]	chr1	76868	9	EXON_MRNA	EXON_MRNA:INTRON	PARP1	ENSG00000143799.14	ENST00000366794.10:ENST00000677203.1:ENST00000677884.1:ENST00000678560.1:ENST00000677091.1:ENST00000678144.1:ENST00000678781.1:ENST00000676685.1:ENST00000679276.1:ENST00000676709.1:ENST00000366792.3:ENST00000366790.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	38	2	1.83416	3.052645	4.27113	0.0631198	0.0199982	0.176946	0.120668
chr16	70669822	70669922	6512024	0	-	0.33	(0.32,0.35]	chr16	630830	39	INTRON	INTRON	MTSS2	ENSG00000132613.16	ENST00000338779.11	protein_coding	protein_coding	protein_coding	protein_coding	2	38	2	1.83416	3.052645	4.27113	0.0631198	0.0199982	0.176946	0.120668
chr16	85584535	85584634	6415677	0	+	0.606061	(0.57,1]	chr16	615470	278	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	6	66	2	2.24116	3.0525149999999996	3.86387	0.00307807	2.27963e-6	0.0496321	9.46989e-4
chr6	24712348	24712446	3070656	0	-	0.581633	(0.57,1]	chr6	285352	31	INTRON	INTRON	C6orf62	ENSG00000112308.13	ENST00000378119.9:ENST00000378102.3	protein_coding	protein_coding	protein_coding	protein_coding	17	176	2	2.6591	3.05246	3.44582	6.66163e-6	3.91711e-8	0.00182447	7.72082e-5
chr1	10213336	10213436	20674	0	+	0.36	(0.35,0.378]	chr1	2016	12	INTRON	INTRON	KIF1B	ENSG00000054523.20	ENST00000676179.1:ENST00000377093.9:ENST00000696500.1:ENST00000696501.1:ENST00000263934.10:ENST00000696502.1:ENST00000696503.1:ENST00000696504.1:ENST00000377086.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	26	2	2.1617	3.052305	3.94291	0.0771502	0.0374229	0.196285	0.155878
chr1	230133225	230133325	334739	0	+	0.37	(0.35,0.378]	chr1	38930	413	INTRON	INTRON	GALNT2	ENSG00000143641.10	ENST00000494106.1:ENST00000366672.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	26	2	2.1617	3.052305	3.94291	0.0771502	0.0374229	0.196285	0.155878
chr10	73082493	73082544	4647702	0	-	0.352941	(0.35,0.378]	chr10	427556	1	EXON_SMALL	EXON_SMALL:INTRON	P4HA1:Y_RNA	ENSG00000122884.13:ENSG00000201047.1	ENST00000394890.7:ENST00000307116.6:ENST00000373008.6:ENST00000440381.5:ENST00000263556.3:ENST00000364177.1	misc_RNA	misc_RNA	misc_RNA:protein_coding	misc_RNA:protein_coding	1	26	2	2.1617	3.052305	3.94291	0.0771502	0.0374229	0.196285	0.155878
chr2	190186805	190186905	957157	0	+	0.37	(0.35,0.378]	chr2	103926	50	INTRON	INTRON	C2orf88	ENSG00000187699.10	ENST00000490033.5:ENST00000450357.5:ENST00000396974.2:ENST00000409545.2:ENST00000409870.1:ENST00000340623.4:ENST00000443551.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	26	2	2.1617	3.052305	3.94291	0.0771502	0.0374229	0.196285	0.155878
chr5	6635263	6635362	2315433	0	+	0.353535	(0.35,0.378]	chr5	224226	10	INTRON	INTRON	SRD5A1	ENSG00000145545.12	ENST00000513117.1:ENST00000510531.5:ENST00000274192.7:ENST00000504286.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	26	2	2.1617	3.052305	3.94291	0.0771502	0.0374229	0.196285	0.155878
chr9	35384614	35384714	4114741	0	+	0.36	(0.35,0.378]	chr9	374998	3	SS5_PROX	SS5_PROX:INTRON	UNC13B	ENSG00000198722.15	ENST00000617908.4:ENST00000619578.4:ENST00000396787.5:ENST00000635942.2:ENST00000378495.7:ENST00000634487.1:ENST00000636694.1:ENST00000637271.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	26	2	2.1617	3.052305	3.94291	0.0771502	0.0374229	0.196285	0.155878
chr11	86020191	86020289	5014347	0	-	0.265306	[0,0.28]	chr11	472995	49	INTRON	INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000630913.2:ENST00000528398.5:ENST00000356360.9:ENST00000534412.5:ENST00000531771.5:ENST00000531558.1:ENST00000531930.5:ENST00000532041.5:ENST00000525162.5:ENST00000528256.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	73	2	2.49527	3.052275	3.60928	0.0436497	9.66382e-4	0.14882	0.0285961
chr11	20398420	20398520	4751031	0	+	0.46	(0.44,0.476]	chr11	440004	3	INTRON	INTRON	PRMT3	ENSG00000185238.13	ENST00000330796.9:ENST00000331079.11:ENST00000437750.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	33	2	1.77101	3.0522349999999996	4.33346	0.0693975	0.0120349	0.184298	0.0962115
chr22	36008746	36008846	7583801	0	-	0.46	(0.44,0.476]	chr22	775907	472	INTRON	INTRON	RBFOX2	ENSG00000100320.24	ENST00000438146.7:ENST00000695854.1	protein_coding	protein_coding	protein_coding	protein_coding	2	33	2	1.77101	3.0522349999999996	4.33346	0.0693975	0.0120349	0.184298	0.0962115
chr5	87286173	87286273	2410971	0	+	0.47	(0.44,0.476]	chr5	232377	165	INTRON	INTRON	RASA1	ENSG00000145715.15	ENST00000274376.11:ENST00000515800.6:ENST00000456692.6:ENST00000506290.1:ENST00000512763.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	33	2	1.77101	3.0522349999999996	4.33346	0.0693975	0.0120349	0.184298	0.0962115
chr5	97184216	97184316	2436815	0	+	0.47	(0.44,0.476]	chr5	234106	3	SS5_PROX	SS5_PROX:INTRON	LIX1-AS1:ENSG00000286828	ENSG00000251513.2:ENSG00000286828.1	ENST00000504578.2:ENST00000654632.1	lncRNA	lncRNA	lncRNA	lncRNA	2	33	2	1.77101	3.0522349999999996	4.33346	0.0693975	0.0120349	0.184298	0.0962115
chr8	42046466	42046564	3941251	0	-	0.469388	(0.44,0.476]	chr8	361224	7	UTR3	UTR3:EXON_MRNA:INTRON	KAT6A	ENSG00000083168.11	ENST00000406337.6:ENST00000265713.8:ENST00000396930.4:ENST00000648335.1:ENST00000649827.1:ENST00000485568.5:ENST00000647809.1:ENST00000648030.1:ENST00000650356.1:ENST00000470574.2:ENST00000426524.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	33	2	1.77101	3.0522349999999996	4.33346	0.0693975	0.0120349	0.184298	0.0962115
chr1	93095275	93095374	162699	0	+	0.323232	(0.32,0.35]	chr1	17567	139	INTRON	INTRON	MTF2	ENSG00000143033.18	ENST00000540243.5:ENST00000545708.5:ENST00000474314.6:ENST00000370298.9:ENST00000473430.5:ENST00000494963.5:ENST00000471953.5:ENST00000370303.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	58	2	3.0247	3.052025	3.07935	0.00724137	0.00671684	0.0738715	0.0729826
chr3	60496911	60497011	1714583	0	-	0.29	(0.28,0.32]	chr3	176138	4162	INTRON	INTRON	FHIT	ENSG00000189283.10	ENST00000492590.6:ENST00000476844.5:ENST00000468189.5:ENST00000488467.5	protein_coding	protein_coding	protein_coding	protein_coding	2	41	2	1.86684	3.052015	4.23719	0.0605813	0.0264147	0.171122	0.133676
chr17	31875813	31875913	6752649	0	-	0.29	(0.28,0.32]	chr17	663752	4	SS3_PROX	SS3_PROX:INTRON	UTP6	ENSG00000108651.10	ENST00000261708.9:ENST00000477128.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	114	2	3.01486	3.0519800000000004	3.0891	0.00162624	7.51507e-4	0.0367966	0.0251578
chr4	78901145	78901245	1982656	0	+	0.36	(0.35,0.378]	chr4	198560	21	INTRON	INTRON	BMP2K	ENSG00000138756.19	ENST00000502613.3	protein_coding	protein_coding	protein_coding	protein_coding	3	73	2	2.59046	3.05197	3.51348	0.00528327	0.00136294	0.0656295	0.0336321
chr3	128648553	128648652	1813990	0	-	0.343434	(0.32,0.35]	chr3	182332	32	INTRON	INTRON	RPN1	ENSG00000163902.12	ENST00000296255.8:ENST00000497289.5:ENST00000495462.5:ENST00000476931.1:ENST00000497415.1:ENST00000481168.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	39	2	1.94202	3.05194	4.16186	0.0486128	0.026079	0.153946	0.133676
chr1	11799129	11799226	378873	0	-	0.536082	(0.515,0.57]	chr1	44470	24	INTRON	INTRON	MTHFR	ENSG00000177000.13	ENST00000376590.9:ENST00000376592.6:ENST00000376583.7:ENST00000376585.6:ENST00000641747.1:ENST00000641805.1:ENST00000641446.1:ENST00000423400.7:ENST00000641407.1:ENST00000641759.1:ENST00000641721.1:ENST00000376486.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	69	2	2.36534	3.051715	3.73809	0.00404547	3.11298e-4	0.0578376	0.0162055
chr20	32447397	32447496	7325514	0	-	0.383838	(0.378,0.408]	chr20	746038	45	UTR3	UTR3:EXON_MRNA	NOL4L	ENSG00000197183.15	ENST00000621426.7:ENST00000359676.9	protein_coding	protein_coding	protein_coding	protein_coding	4	98	2	2.74646	3.05161	3.35676	0.00271684	2.33175e-4	0.0481064	0.013966
chr15	75566624	75566723	6225180	0	-	0.494949	(0.476,0.515]	chr15	594641	390	INTRON	INTRON	PTPN9	ENSG00000169410.11	ENST00000618819.5	protein_coding	protein_coding	protein_coding	protein_coding	3	66	2	2.76855	3.051355	3.33416	0.00244302	0.00230489	0.0456956	0.0428247
chr17	30722685	30722785	6589710	0	+	0.58	(0.57,1]	chr17	640838	125	INTRON	INTRON	SUZ12P1	ENSG00000264538.7	ENST00000578070.5:ENST00000579526.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	2	28	2	2.78409	3.0513399999999997	3.31859	0.0116033	0.00137292	0.0889104	0.0340241
chr7	158890564	158890664	3456476	0	+	0.45	(0.44,0.476]	chr7	323173	31	INTRON	INTRON	DYNC2I1	ENSG00000126870.16	ENST00000407559.8:ENST00000444851.5:ENST00000467220.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	50	2	3.02366	3.05114	3.07862	0.00603307	0.0060153	0.0700813	0.0674604
chr17	32374206	32374306	6598237	0	+	0.43	(0.408,0.44]	chr17	641948	9	UTR3	UTR3:EXON_MRNA:INTRON	ZNF207	ENSG00000010244.19	ENST00000394670.9:ENST00000577908.5:ENST00000581531.5:ENST00000579810.2:ENST00000584416.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	23	457	2	3.01899	3.0510900000000003	3.08319	4.31359e-6	4.87154e-7	0.00151364	3.74956e-4
chr19	47170621	47170720	7084281	0	+	0.474747	(0.44,0.476]	chr19	708798	3	INTRON	INTRON	SAE1	ENSG00000142230.13	ENST00000413379.7:ENST00000270225.12:ENST00000598840.5:ENST00000414294.6:ENST00000660039.1:ENST00000664120.1:ENST00000596995.1:ENST00000392776.3:ENST00000659110.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	67	2	2.59632	3.05108	3.50584	0.00579248	8.66138e-4	0.0662959	0.0266729
chr3	142404568	142404647	1837179	0	-	0.379747	(0.378,0.408]	chr3	184634	2	SS5_PROX	SS5_PROX:INTRON	XRN1	ENSG00000114127.11	ENST00000264951.8:ENST00000392981.7:ENST00000498077.6:ENST00000472697.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	42	2	1.58349	3.051015	4.51854	0.0653091	0.00748824	0.180158	0.0772645
chr2	241682698	241682798	1349397	0	-	0.5	(0.476,0.515]	chr2	141807	1	SS5_ADJ	SS5_ADJ:SS3_PROX:SS5_PROX:INTRON	DTYMK	ENSG00000168393.13	ENST00000400770.6:ENST00000305784.7:ENST00000445261.5:ENST00000432348.5:ENST00000420144.1:ENST00000493095.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	122	2	2.59672	3.0510099999999998	3.5053	6.3664e-4	9.14136e-5	0.0228285	0.00850096
chr12	93434660	93434760	5388166	0	-	0.36	(0.35,0.378]	chr12	513727	99	INTRON	INTRON	UBE2N	ENSG00000177889.10	ENST00000318066.7:ENST00000550657.1:ENST00000549833.1:ENST00000549490.1:ENST00000552442.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	55	2	2.92952	3.05098	3.17244	0.00881187	0.00487788	0.084878	0.0607461
chr1	143899413	143899512	537007	0	-	0.585859	(0.57,1]	chr1	63089	32	INTRON	INTRON	H3-2	ENSG00000273213.4	ENST00000650532.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	2	28	2	2.91889	3.050945	3.183	0.00719009	0.00254356	0.0756118	0.0448135
chr11	774477	774565	4889712	0	-	0.613636	(0.57,1]	chr11	457834	4	SS3_PROX	SS3_PROX:INTRON	GATD1	ENSG00000177225.17	ENST00000319863.13:ENST00000397472.6:ENST00000354286.8:ENST00000526325.5:ENST00000524550.5:ENST00000532320.5:ENST00000529966.5:ENST00000534603.5:ENST00000532839.5:ENST00000528602.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	28	2	2.91889	3.050945	3.183	0.00719009	0.00254356	0.0756118	0.0448135
chr16	74332149	74332233	6523170	0	-	0.619048	(0.57,1]	chr16	631553	2	SS5_PROX	SS5_PROX:INTRON	ENSG00000259972	ENSG00000259972.3	ENST00000565313.1:ENST00000561921.1	lncRNA	lncRNA	lncRNA	lncRNA	2	28	2	2.91889	3.050945	3.183	0.00719009	0.00254356	0.0756118	0.0448135
chr3	42603751	42603850	1406002	0	+	0.585859	(0.57,1]	chr3	147651	8	INTRON	INTRON	NKTR	ENSG00000114857.19	ENST00000468735.6:ENST00000460910.5:ENST00000487466.5:ENST00000429888.5:ENST00000232978.13:ENST00000442970.5:ENST00000445842.1:ENST00000478488.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	28	2	2.91889	3.050945	3.183	0.00719009	0.00254356	0.0756118	0.0448135
chr10	47540283	47540383	4609348	0	-	0.38	(0.378,0.408]	chr10	424648	1	SS3_PROX	SS3_PROX:INTRON	ENSG00000254929:BMS1P2	ENSG00000254929.6:ENSG00000251079.6	ENST00000605970.5:ENST00000431840.2:ENST00000532854.5:ENST00000450360.2	lncRNA	lncRNA	lncRNA:transcribed_unprocessed_pseudogene	lncRNA:processed_transcript:transcribed_unprocessed_pseudogene	1	25	2	2.13703	3.05087	3.96471	0.0797592	0.032421	0.19979	0.145026
chr10	72412835	72412935	4644780	0	-	0.39	(0.378,0.408]	chr10	427379	44	INTRON	INTRON	MICU1	ENSG00000107745.20	ENST00000361114.10:ENST00000476605.7:ENST00000642044.1:ENST00000635239.1:ENST00000418483.6:ENST00000398763.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	25	2	2.13703	3.05087	3.96471	0.0797592	0.032421	0.19979	0.145026
chr16	72755569	72755668	6388339	0	+	0.40404	(0.378,0.408]	chr16	614360	80	INTRON	INTRON	ENSG00000259768	ENSG00000259768.7	ENST00000668995.1:ENST00000689200.1:ENST00000687589.1:ENST00000692742.1:ENST00000692937.1:ENST00000653037.1:ENST00000686426.1:ENST00000563328.4	lncRNA	lncRNA	lncRNA	lncRNA	1	25	2	2.13703	3.05087	3.96471	0.0797592	0.032421	0.19979	0.145026
chr17	78411880	78411980	6682635	0	+	0.39	(0.378,0.408]	chr17	652826	74	INTRON	INTRON	PGS1	ENSG00000087157.19	ENST00000262764.11:ENST00000589425.5:ENST00000589426.5:ENST00000588169.5:ENST00000585521.2:ENST00000588281.5:ENST00000591996.1:ENST00000586019.1:ENST00000586355.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	25	2	2.13703	3.05087	3.96471	0.0797592	0.032421	0.19979	0.145026
chr18	26298203	26298302	6885215	0	+	0.393939	(0.378,0.408]	chr18	682484	25	INTRON	INTRON	TAF4B	ENSG00000141384.13	ENST00000269142.10:ENST00000578121.5:ENST00000418698.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	25	2	2.13703	3.05087	3.96471	0.0797592	0.032421	0.19979	0.145026
chr22	19050829	19050928	7551286	0	-	0.40404	(0.378,0.408]	chr22	771857	18	INTRON	INTRON	DGCR2	ENSG00000070413.20	ENST00000537045.5:ENST00000545799.5:ENST00000263196.12:ENST00000389262.8:ENST00000467659.1:ENST00000608548.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	25	2	2.13703	3.05087	3.96471	0.0797592	0.032421	0.19979	0.145026
chr4	122988375	122988475	2036292	0	+	0.38	(0.378,0.408]	chr4	202352	86	INTRON	INTRON	SPATA5	ENSG00000145375.9	ENST00000675612.1:ENST00000274008.5:ENST00000674886.1:ENST00000422835.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	25	2	2.13703	3.05087	3.96471	0.0797592	0.032421	0.19979	0.145026
chr5	41939528	41939616	2344689	0	+	0.397727	(0.378,0.408]	chr5	226407	2	CDS	CDS:EXON_MRNA:INTRON	FBXO4	ENSG00000151876.13	ENST00000281623.8:ENST00000509134.1:ENST00000505566.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	25	2	2.13703	3.05087	3.96471	0.0797592	0.032421	0.19979	0.145026
chr5	134540368	134540467	2488960	0	+	0.393939	(0.378,0.408]	chr5	237648	19	INTRON	INTRON	JADE2	ENSG00000043143.22	ENST00000431355.2:ENST00000282605.8:ENST00000681547.2:ENST00000361895.6:ENST00000402835.5:ENST00000680418.1:ENST00000395003.5:ENST00000681820.1:ENST00000512386.6:ENST00000612830.2:ENST00000681792.1:ENST00000681019.1:ENST00000681498.1:ENST00000430087.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	25	2	2.13703	3.05087	3.96471	0.0797592	0.032421	0.19979	0.145026
chr13	51963979	51964077	5596430	0	-	0.479592	(0.476,0.515]	chr13	534946	17	INTRON	INTRON	ATP7B	ENSG00000123191.16	ENST00000242839.10:ENST00000344297.9:ENST00000674147.1:ENST00000448424.7:ENST00000634620.1:ENST00000634296.1:ENST00000400370.8:ENST00000634844.1:ENST00000673772.1:ENST00000634308.1:ENST00000418097.7:ENST00000400366.6:ENST00000635406.1:ENST00000482841.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	90	2	2.93046	3.05083	3.1712	0.00118985	4.95874e-4	0.031662	0.0206925
chr9	131466567	131466666	4217707	0	+	0.474747	(0.44,0.476]	chr9	386784	11	INTRON	INTRON	PRRC2B	ENSG00000288701.1	ENST00000684596.1:ENST00000683519.1:ENST00000682501.1:ENST00000684736.1	protein_coding	protein_coding	protein_coding	protein_coding	4	89	2	2.91252	3.0507850000000003	3.18905	0.00164027	3.33091e-4	0.0369207	0.0162254
chr5	39054019	39054119	2605444	0	-	0.46	(0.44,0.476]	chr5	247896	325	INTRON	INTRON	RICTOR	ENSG00000164327.13	ENST00000357387.8:ENST00000511516.5:ENST00000296782.9:ENST00000510711.5:ENST00000513566.1:ENST00000514735.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	100	2	2.19078	3.050745	3.91071	0.0226089	4.72898e-6	0.117489	0.00146697
chr1	174258766	174258866	258108	0	+	0.47	(0.44,0.476]	chr1	30773	58	INTRON	INTRON	RABGAP1L	ENSG00000152061.24	ENST00000357444.10:ENST00000251507.8:ENST00000681986.1:ENST00000457696.1	protein_coding	protein_coding	protein_coding	protein_coding	7	112	2	1.80702	3.0507400000000002	4.29446	0.00924948	2.62765e-5	0.0855292	0.0042413
chr3	183984327	183984423	1882281	0	-	0.489583	(0.476,0.515]	chr3	188191	7	UTR3	UTR3:EXON_MRNA:INTRON	ABCC5	ENSG00000114770.17	ENST00000334444.11:ENST00000265586.10:ENST00000437205.5:ENST00000382494.6:ENST00000392579.6:ENST00000443376.5:ENST00000427120.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	66	2	2.72507	3.050695	3.37632	0.0029369	0.00195267	0.0496505	0.0400465
chr17	32011329	32011429	6596368	0	+	0.36	(0.35,0.378]	chr17	641626	28	INTRON	INTRON	LRRC37B	ENSG00000185158.12	ENST00000583342.1:ENST00000579206.5:ENST00000543378.6:ENST00000581370.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	32	2	1.90405	3.050575	4.1971	0.0482651	0.0367539	0.171852	0.138959
chr5	131788219	131788318	2720657	0	-	0.353535	(0.35,0.378]	chr5	255730	432	INTRON	INTRON	FNIP1	ENSG00000217128.13	ENST00000510461.6:ENST00000307954.12:ENST00000307968.11:ENST00000511848.1	protein_coding	protein_coding	protein_coding	protein_coding	2	32	2	1.90405	3.050575	4.1971	0.0482651	0.0367539	0.171852	0.138959
chr7	44662944	44663044	3314855	0	+	0.37	(0.35,0.378]	chr7	307918	62	INTRON	INTRON	OGDH	ENSG00000105953.16	ENST00000439616.6:ENST00000443864.6:ENST00000449767.5:ENST00000447398.5:ENST00000419661.5:ENST00000222673.6:ENST00000444676.5	protein_coding	protein_coding	protein_coding	protein_coding	2	32	2	1.90405	3.050575	4.1971	0.0482651	0.0367539	0.171852	0.138959
chr4	128069781	128069880	2042679	0	+	0.292929	(0.28,0.32]	chr4	202845	72	INTRON	INTRON	LARP1B	ENSG00000138709.19	ENST00000512292.5:ENST00000326639.11:ENST00000508819.5:ENST00000394288.7:ENST00000432347.6:ENST00000649983.1:ENST00000650359.1:ENST00000648358.1	protein_coding	protein_coding	protein_coding	protein_coding	3	45	2	1.85772	3.05046	4.2432	0.0479043	0.0300199	0.153019	0.142135
chr6	157908381	157908480	3016622	0	+	0.272727	[0,0.28]	chr6	281403	23	EXON_MRNA	EXON_MRNA:INTRON	SNX9	ENSG00000130340.17	ENST00000680863.1:ENST00000679814.1:ENST00000680464.1:ENST00000681186.1:ENST00000679732.1:ENST00000681183.1:ENST00000681534.1:ENST00000681651.1:ENST00000680089.1:ENST00000680078.1:ENST00000680974.1:ENST00000680095.1:ENST00000680015.1:ENST00000681138.1:ENST00000392185.8:ENST00000679790.1:ENST00000680495.1:ENST00000679691.1:ENST00000681881.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	97	2	2.52489	3.050375	3.57586	0.0084136	0.00187793	0.082518	0.039073
chr5	180524375	180524475	2562163	0	+	0.34	(0.32,0.35]	chr5	245082	284	INTRON	INTRON	CNOT6	ENSG00000113300.13	ENST00000261951.9:ENST00000393356.7:ENST00000507016.1:ENST00000618123.4:ENST00000502447.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	61	2	2.37794	3.05035	3.72276	0.0498601	3.96144e-4	0.156383	0.0178616
chr17	16447451	16447550	6562734	0	+	0.515152	(0.476,0.515]	chr17	637925	55	INTRON	INTRON	SNHG29	ENSG00000175061.19	ENST00000584177.5:ENST00000665646.1:ENST00000660419.1:ENST00000668333.1:ENST00000664939.1:ENST00000583400.7:ENST00000669136.1:ENST00000580770.5:ENST00000581718.6:ENST00000579473.6:ENST00000581361.5:ENST00000692724.1:ENST00000689691.1:ENST00000686699.1:ENST00000472367.5:ENST00000483588.2:ENST00000478103.6:ENST00000658943.1	lncRNA	lncRNA	lncRNA	lncRNA	6	101	2	2.04194	3.0503150000000003	4.05869	0.00499341	8.7207e-5	0.0646039	0.00839538
chr19	10317070	10317166	7135334	0	-	0.572917	(0.57,1]	chr19	719323	10	UTR3	UTR3:EXON_MRNA	RAVER1	ENSG00000161847.14	ENST00000617231.5:ENST00000592208.5:ENST00000611074.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	86	2	2.87699	3.050275	3.22356	2.95909e-5	2.85055e-5	0.00451038	0.00423282
chr22	20527355	20527454	7479548	0	+	0.242424	[0,0.28]	chr22	762964	26	INTRON	INTRON	MED15	ENSG00000099917.17	ENST00000445987.5:ENST00000444094.5:ENST00000414658.5:ENST00000486656.5:ENST00000433831.5:ENST00000432052.5:ENST00000292733.11:ENST00000263205.11:ENST00000477824.5:ENST00000406969.5:ENST00000382974.6:ENST00000441501.5:ENST00000438962.1:ENST00000445189.5:ENST00000451058.5:ENST00000473028.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	71	2	2.68918	3.05016	3.41114	0.0275571	0.00211753	0.123904	0.0425644
chr12	110399441	110399540	5409156	0	-	0.343434	(0.32,0.35]	chr12	516463	26	INTRON	INTRON	ANAPC7:ENSG00000258210	ENSG00000196510.14:ENSG00000258210.1	ENST00000455511.9:ENST00000450008.3:ENST00000552170.2:ENST00000550231.1:ENST00000464697.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay	5	128	2	2.65387	3.05011	3.44635	0.00137401	2.01759e-4	0.0340409	0.0129814
chr19	10800332	10800429	7014614	0	+	0.463918	(0.44,0.476]	chr19	697005	14	INTRON	INTRON	DNM2	ENSG00000079805.19	ENST00000683738.1:ENST00000682285.1:ENST00000355667.11:ENST00000389253.9:ENST00000585892.5:ENST00000359692.10:ENST00000408974.8:ENST00000587830.2:ENST00000587329.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	42	2	1.49356	3.050015	4.60647	0.0537505	0.0102339	0.180803	0.0850389
chr21	33461496	33461595	7440791	0	-	0.464646	(0.44,0.476]	chr21	759350	6	INTRON	INTRON	TMEM50B	ENSG00000142188.17	ENST00000420455.5:ENST00000542230.7:ENST00000441128.5:ENST00000442441.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	42	2	1.49356	3.050015	4.60647	0.0537505	0.0102339	0.180803	0.0850389
chr2	167868041	167868141	1258481	0	-	0.42	(0.408,0.44]	chr2	133328	48	INTRON	INTRON	B3GALT1-AS1	ENSG00000235335.3	ENST00000430546.2:ENST00000657553.1:ENST00000670221.1:ENST00000436982.2	lncRNA	lncRNA	lncRNA	lncRNA	2	50	2	2.95296	3.0500100000000003	3.14706	0.00929354	0.00382411	0.0817766	0.0562562
chr19	34380235	34380322	7052643	0	+	0.517241	(0.515,0.57]	chr19	703394	3	INTRON	INTRON	GPI	ENSG00000105220.17	ENST00000415930.8:ENST00000588991.7:ENST00000356487.11:ENST00000647446.1:ENST00000586425.2:ENST00000643067.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	15	263	2	2.76252	3.04995	3.33738	3.92332e-5	1.70939e-7	0.00533644	1.88633e-4
chr18	211579	211677	6855374	0	+	0.408163	(0.378,0.408]	chr18	679579	4	UTR3	UTR3:EXON_MRNA	USP14	ENSG00000101557.15	ENST00000261601.8:ENST00000578942.5:ENST00000383589.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	141	2	2.61696	3.04986	3.48276	2.8309e-4	1.23627e-4	0.01504	0.0100054
chrX	134492815	134492911	7724401	0	+	0.40625	(0.378,0.408]	chrX	790178	23	INTRON	INTRON	HPRT1	ENSG00000165704.15	ENST00000298556.8:ENST00000462974.5:ENST00000475720.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	32	2	2.11103	3.04985	3.98867	0.0507	0.0266911	0.156383	0.134419
chr15	63673094	63673194	6199248	0	-	0.28	[0,0.28]	chr15	591227	4	SS3_PROX	SS3_PROX:INTRON	HERC1	ENSG00000103657.14	ENST00000443617.7	protein_coding	protein_coding	protein_coding	protein_coding	2	39	2	1.8986	3.04983	4.20106	0.0695895	0.0531512	0.184298	0.179787
chr5	54148483	54148583	2619294	0	-	0.25	[0,0.28]	chr5	248848	347	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2:ENST00000505630.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	39	2	1.8986	3.04983	4.20106	0.0695895	0.0531512	0.184298	0.179787
chr6	47530404	47530504	2874092	0	+	0.24	[0,0.28]	chr6	272731	266	INTRON	INTRON	CD2AP	ENSG00000198087.7	ENST00000359314.5	protein_coding	protein_coding	protein_coding	protein_coding	2	39	2	1.8986	3.04983	4.20106	0.0695895	0.0531512	0.184298	0.179787
chr7	133734407	133734506	3422995	0	+	0.272727	[0,0.28]	chr7	319395	1039	INTRON	INTRON	EXOC4	ENSG00000131558.15	ENST00000253861.5:ENST00000479839.6:ENST00000483800.5:ENST00000469115.5:ENST00000489931.5:ENST00000482089.5:ENST00000460346.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	39	2	1.8986	3.04983	4.20106	0.0695895	0.0531512	0.184298	0.179787
chr8	123382269	123382369	4042501	0	-	0.24	[0,0.28]	chr8	368789	12	INTRON	INTRON	ATAD2	ENSG00000156802.13	ENST00000287394.10:ENST00000517666.5:ENST00000521903.5:ENST00000519124.5:ENST00000521496.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	39	2	1.8986	3.04983	4.20106	0.0695895	0.0531512	0.184298	0.179787
chr1	225411640	225411740	645586	0	-	0.49	(0.476,0.515]	chr1	76350	2	SS3_PROX	SS3_PROX:INTRON	LBR	ENSG00000143815.15	ENST00000272163.9:ENST00000338179.6:ENST00000651341.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	218	2	2.53799	3.04978	3.56157	2.29704e-4	1.55198e-6	0.0139078	7.4731e-4
chr14	31133975	31134075	5858251	0	-	0.4	(0.378,0.408]	chr14	556616	3	SS3_PROX	SS3_PROX:INTRON	HECTD1	ENSG00000092148.14	ENST00000399332.6:ENST00000553700.5:ENST00000693685.1:ENST00000692835.1:ENST00000554882.6:ENST00000611816.5:ENST00000688933.1:ENST00000691390.1:ENST00000553957.6:ENST00000691123.1:ENST00000687002.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	35	2	1.88729	3.049775	4.21226	0.0532327	0.0177403	0.162538	0.11319
chr21	14521816	14521911	7427958	0	-	0.242105	[0,0.28]	chr21	757763	2	INTRON	INTRON	SAMSN1	ENSG00000155307.19	ENST00000647101.1:ENST00000644288.1:ENST00000400564.5:ENST00000400566.6:ENST00000285670.7:ENST00000619120.4:ENST00000493640.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	96	2	2.42978	3.0497449999999997	3.66971	0.0149657	7.51669e-4	0.0994339	0.0251578
chr6	149744497	149744591	3246952	0	-	0.425532	(0.408,0.44]	chr6	301703	4	INTRON	INTRON	NUP43	ENSG00000120253.14	ENST00000340413.7:ENST00000367404.8:ENST00000403890.7:ENST00000367402.6:ENST00000543637.1:ENST00000463048.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	68	2	2.68622	3.049725	3.41323	0.00418848	0.00129989	0.0572071	0.0333764
chr8	67341363	67341463	3963796	0	-	0.44	(0.408,0.44]	chr8	363741	385	INTRON	INTRON	ARFGEF1	ENSG00000066777.9	ENST00000262215.8:ENST00000519436.1	protein_coding	protein_coding	protein_coding	protein_coding	5	92	2	2.19398	3.049725	3.90547	0.0043348	2.03612e-4	0.0600652	0.0129859
chr14	101827215	101827314	5819163	0	+	0.484848	(0.476,0.515]	chr14	551860	19	INTRON	INTRON	PPP2R5C	ENSG00000078304.20	ENST00000694906.1:ENST00000422945.6:ENST00000554442.5:ENST00000328724.9:ENST00000553890.1:ENST00000350249.7:ENST00000557621.5:ENST00000556946.1:ENST00000556307.5:ENST00000553730.5:ENST00000557714.1:ENST00000334743.9:ENST00000445439.7:ENST00000557095.5:ENST00000556493.1:ENST00000553842.1:ENST00000556373.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	67	2	2.31726	3.04969	3.78212	0.015077	2.36145e-4	0.0994339	0.0136195
chr6	3004751	3004851	2787899	0	+	0.39	(0.378,0.408]	chr6	263235	1	SS5_PROX	SS5_PROX:INTRON	NQO2	ENSG00000124588.22	ENST00000426637.5:ENST00000380472.7:ENST00000380455.11:ENST00000397717.7:ENST00000338130.7:ENST00000380441.5:ENST00000380454.8:ENST00000380430.6:ENST00000606474.1	protein_coding	protein_coding	protein_coding	protein_coding	3	71	2	2.76893	3.049595	3.33026	0.00316735	0.00189824	0.0503085	0.0402736
chr14	67938029	67938129	5766556	0	+	0.37	(0.35,0.378]	chr14	547062	288	INTRON	INTRON	RAD51B	ENSG00000182185.19	ENST00000487861.5:ENST00000471583.6:ENST00000479335.5:ENST00000487270.5:ENST00000488612.5:ENST00000553595.5:ENST00000497460.5:ENST00000492236.5:ENST00000554244.5:ENST00000478014.5:ENST00000469165.6:ENST00000460526.5:ENST00000468382.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	54	2	2.99044	3.0495349999999997	3.10863	0.00894806	0.00470896	0.0799922	0.0631419
chr2	64592520	64592617	798363	0	+	0.350515	(0.35,0.378]	chr2	89222	6	UTR3	UTR3:EXON_MRNA	AFTPH	ENSG00000119844.17	ENST00000695864.1:ENST00000238856.8:ENST00000409933.6:ENST00000695867.1	protein_coding	protein_coding	protein_coding	protein_coding	2	54	2	2.99044	3.0495349999999997	3.10863	0.00894806	0.00470896	0.0799922	0.0631419
chr7	72226087	72226187	3548792	0	-	0.49	(0.476,0.515]	chr7	330473	1194	INTRON	INTRON	CALN1	ENSG00000183166.11	ENST00000395276.6:ENST00000395275.7:ENST00000329008.9:ENST00000431984.5:ENST00000446128.1	protein_coding	protein_coding	protein_coding	protein_coding	2	50	2	2.94692	3.04947	3.15202	0.00794331	0.00455841	0.0797304	0.0595107
chr21	46203242	46203342	7470607	0	-	0.39	(0.378,0.408]	chr21	761464	66	INTRON	INTRON	LSS	ENSG00000160285.15	ENST00000356396.8:ENST00000397728.8:ENST00000457828.6:ENST00000522411.5	protein_coding	protein_coding	protein_coding	protein_coding	17	308	2	2.39377	3.04943	3.70509	6.59912e-5	1.86495e-6	0.00672178	9.28079e-4
chr17	81558862	81558961	6848789	0	-	0.575758	(0.57,1]	chr17	678104	21	UTR3	UTR3:EXON_MRNA	NPLOC4	ENSG00000182446.14	ENST00000331134.11:ENST00000572760.5	protein_coding	protein_coding	protein_coding	protein_coding	17	162	2	2.39137	3.0494000000000003	3.70743	3.13581e-5	2.18325e-8	0.00467234	5.44218e-5
chr15	41349657	41349741	6004942	0	+	0.357143	(0.35,0.378]	chr15	571308	4	SS5_PROX	SS5_PROX:INTRON	NUSAP1	ENSG00000137804.14	ENST00000668273.1:ENST00000260359.10:ENST00000558123.5:ENST00000559046.5:ENST00000414849.6:ENST00000450592.6:ENST00000559596.6:ENST00000558582.5:ENST00000560747.5:ENST00000560177.5:ENST00000557840.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	57	2	2.39939	3.049335	3.69928	0.0458078	3.94786e-4	0.149888	0.0178567
chr2	176306657	176306757	925590	0	+	0.39	(0.378,0.408]	chr2	101688	19	INTRON	INTRON	MTX2	ENSG00000128654.14	ENST00000420864.5:ENST00000249442.11:ENST00000423461.6:ENST00000443241.5:ENST00000452865.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	95	2	2.18994	3.0492850000000002	3.90863	0.00448961	2.19981e-4	0.0612035	0.0135522
chr11	118381390	118381456	4871562	0	+	0.409091	(0.408,0.44]	chr11	454880	1	CDS	CDS:EXON_MRNA	UBE4A	ENSG00000110344.10	ENST00000252108.8:ENST00000431736.6:ENST00000545354.1	protein_coding	protein_coding	protein_coding	protein_coding	4	80	2	2.5027	3.04913	3.59556	0.00238178	8.33275e-4	0.0449397	0.0266389
chrX	47177749	47177844	7655409	0	+	0.4	(0.378,0.408]	chrX	783116	8	INTRON	INTRON	RBM10	ENSG00000182872.16	ENST00000377604.8:ENST00000345781.10:ENST00000628161.2:ENST00000329236.8:ENST00000496012.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	83	2	2.69945	3.049085	3.39872	0.0019852	9.70462e-4	0.0404516	0.0286926
chr16	89516118	89516215	6420418	0	+	0.484536	(0.476,0.515]	chr16	616211	17	INTRON	INTRON	SPG7	ENSG00000197912.16	ENST00000647079.1:ENST00000646303.1:ENST00000643649.1:ENST00000643307.1:ENST00000566371.6:ENST00000644498.1:ENST00000645897.1:ENST00000643668.1:ENST00000644225.1:ENST00000645818.2:ENST00000645977.1:ENST00000645063.1:ENST00000646263.1:ENST00000643724.1:ENST00000644781.1:ENST00000644901.1:ENST00000645042.1:ENST00000646531.1:ENST00000646930.1:ENST00000642436.1:ENST00000644210.1:ENST00000564047.2:ENST00000646589.1:ENST00000268704.7:ENST00000646826.1:ENST00000646716.1:ENST00000643345.1:ENST00000341316.6:ENST00000645533.1:ENST00000646958.1:ENST00000642371.1:ENST00000643105.1:ENST00000645354.1:ENST00000643957.1:ENST00000642334.1:ENST00000647227.1:ENST00000562775.2:ENST00000568151.1:ENST00000646445.1:ENST00000564409.2:ENST00000643954.1:ENST00000646399.1:ENST00000644671.1:ENST00000643178.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	80	2	2.29359	3.04907	3.80455	0.00584957	3.04782e-4	0.0689807	0.0161236
chr1	26275271	26275371	49909	0	+	0.49	(0.476,0.515]	chr1	6257	2	SS5_PROX	SS5_PROX:INTRON	CEP85	ENSG00000130695.16	ENST00000451429.8:ENST00000640292.2:ENST00000252992.8:ENST00000453146.1:ENST00000469609.5:ENST00000491670.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	51	2	2.80729	3.049015	3.29074	0.0126008	0.00272563	0.0980703	0.0467523
chr2	26779676	26779773	715682	0	+	0.484536	(0.476,0.515]	chr2	82657	13	UTR3	UTR3:EXON_MRNA:INTRON	SLC35F6:CENPA	ENSG00000213699.9:ENSG00000115163.15	ENST00000344420.10:ENST00000429494.5:ENST00000475662.5:ENST00000414029.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	51	2	2.80729	3.049015	3.29074	0.0126008	0.00272563	0.0980703	0.0467523
chr22	17650967	17651067	7475142	0	+	0.49	(0.476,0.515]	chr22	762152	117	INTRON	INTRON	BCL2L13	ENSG00000099968.18	ENST00000399781.5:ENST00000399782.5:ENST00000337612.9:ENST00000418951.6:ENST00000538149.5:ENST00000543133.5:ENST00000611738.4:ENST00000616863.4:ENST00000618481.4:ENST00000498133.5:ENST00000317582.10:ENST00000464649.1:ENST00000493680.5:ENST00000355028.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	51	2	2.80729	3.049015	3.29074	0.0126008	0.00272563	0.0980703	0.0467523
chr17	51265381	51265481	6627623	0	+	0.54	(0.515,0.57]	chr17	647342	16	INTRON	INTRON	UTP18	ENSG00000011260.14	ENST00000225298.12	protein_coding	protein_coding	protein_coding	protein_coding	3	59	2	2.84387	3.0489949999999997	3.25412	0.00224554	0.0018149	0.0435144	0.0384415
chr1	37681860	37681957	424593	0	-	0.309278	(0.28,0.32]	chr1	51388	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	C1orf109	ENSG00000116922.15	ENST00000494120.1:ENST00000486637.2:ENST00000358011.8:ENST00000609516.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	64	2	1.75919	3.0489100000000002	4.33863	0.0300418	0.0207276	0.129138	0.122348
chr2	230403174	230403267	1028806	0	+	0.44086	(0.44,0.476]	chr2	109810	4	UTR3	UTR3:EXON_MRNA	SP140L	ENSG00000185404.17	ENST00000415673.7:ENST00000243810.10:ENST00000396563.8:ENST00000483728.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	80	2	2.70421	3.0487149999999996	3.39322	0.00187283	9.23275e-4	0.0390476	0.0278392
chr3	100734233	100734330	1468190	0	+	0.463918	(0.44,0.476]	chr3	153872	17	EXON_MRNA	EXON_MRNA:INTRON	TFG	ENSG00000114354.15	ENST00000675047.1:ENST00000490574.6:ENST00000675543.1:ENST00000676308.1:ENST00000675499.1:ENST00000674699.1:ENST00000418917.7:ENST00000675553.1:ENST00000620299.5:ENST00000675246.1:ENST00000675692.1:ENST00000676276.1:ENST00000676054.1:ENST00000675890.1:ENST00000675011.1:ENST00000675586.1:ENST00000674645.1:ENST00000675958.1:ENST00000674798.1:ENST00000676010.1:ENST00000675591.1:ENST00000675420.1:ENST00000674615.1:ENST00000676431.1:ENST00000674758.1:ENST00000240851.9:ENST00000675243.1:ENST00000676111.1:ENST00000476228.5:ENST00000463568.6:ENST00000676395.1:ENST00000487505.6:ENST00000615993.2:ENST00000676455.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	80	2	2.70421	3.0487149999999996	3.39322	0.00187283	9.23275e-4	0.0390476	0.0278392
chr1	25565507	25565607	48883	0	+	0.48	(0.476,0.515]	chr1	6021	3	SS5_PROX	SS5_PROX:INTRON	LDLRAP1	ENSG00000157978.12	ENST00000374338.5:ENST00000488127.1:ENST00000484476.5:ENST00000474283.1:ENST00000470950.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	80	2	2.31529	3.048705	3.78212	0.00614783	2.36145e-4	0.0676501	0.0136195
chr1	39879789	39879887	428236	0	-	0.44898	(0.44,0.476]	chr1	52034	33	INTRON	INTRON	TRIT1	ENSG00000043514.17	ENST00000316891.10:ENST00000648678.1:ENST00000537440.5:ENST00000372818.5:ENST00000462797.5:ENST00000441669.6:ENST00000495175.6:ENST00000491865.5:ENST00000541099.5:ENST00000492612.6:ENST00000489945.5:ENST00000486825.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	89	2	2.97428	3.04863	3.12298	0.00125568	4.66209e-4	0.0323608	0.0195589
chr10	71833000	71833097	4642656	0	-	0.381443	(0.378,0.408]	chr10	427170	7	INTRON	INTRON	PSAP	ENSG00000197746.15	ENST00000394936.8	protein_coding	protein_coding	protein_coding	protein_coding	3	38	2	1.78011	3.0485499999999996	4.31699	0.0356367	0.0250408	0.151629	0.12011
chr7	104997817	104997917	3600929	0	-	0.55	(0.515,0.57]	chr7	336035	140	INTRON	INTRON	LINC01004	ENSG00000228393.5	ENST00000450686.1:ENST00000655204.2:ENST00000445184.1	lncRNA	lncRNA	lncRNA	lncRNA	3	58	2	3.00693	3.048475	3.09002	0.00491099	7.26845e-4	0.0609494	0.0245647
chr17	59906987	59907070	6643901	0	+	0.506024	(0.476,0.515]	chr17	648799	1	UTR5	UTR5:EXON_MRNA:INTRON	RPS6KB1	ENSG00000108443.14	ENST00000393021.7:ENST00000472940.5:ENST00000225577.9:ENST00000477179.5:ENST00000443572.6:ENST00000489824.1:ENST00000406116.7:ENST00000592726.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	70	2	2.82673	3.0483849999999997	3.27004	0.0134403	2.20887e-4	0.0946278	0.0130309
chr20	32369223	32369323	7255932	0	+	0.48	(0.476,0.515]	chr20	737065	1	SS5_PROX	SS5_PROX:INTRON	ASXL1	ENSG00000171456.21	ENST00000651418.1:ENST00000375687.10:ENST00000613218.4:ENST00000646367.1:ENST00000644587.1:ENST00000620121.4:ENST00000645337.1:ENST00000649901.1:ENST00000646985.1:ENST00000645035.1:ENST00000497249.6:ENST00000643168.1:ENST00000375689.5:ENST00000306058.9:ENST00000555343.2:ENST00000645688.1:ENST00000642676.1:ENST00000470145.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	162	2	2.91808	3.048345	3.17861	1.08727e-4	4.52733e-5	0.00936424	0.00547142
chr1	109371288	109371387	520753	0	-	0.373737	(0.35,0.378]	chr1	61195	13	INTRON	INTRON	SORT1	ENSG00000134243.12	ENST00000538502.5:ENST00000256637.8:ENST00000493736.5:ENST00000482236.5:ENST00000633956.1:ENST00000471996.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	73	2	2.32464	3.04831	3.77198	0.0159285	2.78147e-4	0.101453	0.0148626
chr5	176351728	176351826	2775200	0	-	0.397959	(0.378,0.408]	chr5	261317	6	INTRON	INTRON	KIAA1191	ENSG00000122203.15	ENST00000393725.6:ENST00000298569.9:ENST00000393728.6:ENST00000614420.4:ENST00000620366.4:ENST00000510164.5:ENST00000533553.5:ENST00000506983.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	43	2	1.51223	3.04825	4.58427	0.051139	0.0128325	0.176696	0.0926667
chr17	44056616	44056716	6778294	0	-	0.44	(0.408,0.44]	chr17	668123	160	INTRON	INTRON	LSM12	ENSG00000161654.10	ENST00000591247.6:ENST00000293406.8:ENST00000585388.2	protein_coding	protein_coding	protein_coding	protein_coding	3	68	2	3.00595	3.04816	3.09037	0.00781452	5.47766e-4	0.0759016	0.0212924
chr3	47474623	47474722	1682846	0	-	0.545455	(0.515,0.57]	chr3	171885	19	INTRON	INTRON	SCAP	ENSG00000114650.21	ENST00000265565.10:ENST00000441517.6:ENST00000320017.10:ENST00000416208.5:ENST00000416847.5:ENST00000448217.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	58	2	2.51561	3.0481249999999998	3.58064	0.00635044	6.54693e-4	0.0723103	0.0233335
chr11	86012990	86013088	5014273	0	-	0.489796	(0.476,0.515]	chr11	472988	2	INTRON	INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000630913.2:ENST00000528398.5:ENST00000356360.9:ENST00000534412.5:ENST00000531771.5:ENST00000531558.1:ENST00000531930.5:ENST00000532041.5:ENST00000525162.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	119	2	2.11739	3.04812	3.97885	0.00157139	1.30749e-4	0.0365659	0.0103941
chr10	131912698	131912798	4536983	0	+	0.41	(0.408,0.44]	chr10	418865	1	SS5_PROX	SS5_PROX:INTRON	PPP2R2D	ENSG00000175470.20	ENST00000455566.6:ENST00000616467.4:ENST00000482010.6:ENST00000470416.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	102	2	2.3372	3.04801	3.75882	0.00122451	4.04678e-4	0.0324961	0.0185763
chr10	74103419	74103519	4455573	0	+	0.3	(0.28,0.32]	chr10	411474	2	SS3_PROX	SS3_PROX:INTRON	VCL	ENSG00000035403.18	ENST00000623461.3:ENST00000372755.7:ENST00000624354.3:ENST00000211998.10:ENST00000478896.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	84	2	2.63379	3.047945	3.4621	0.00503861	0.00218379	0.0646039	0.0417893
chr6	163562569	163562656	3033193	0	+	0.298851	(0.28,0.32]	chr6	282599	1	INTRON	INTRON	QKI	ENSG00000112531.17	ENST00000361758.8:ENST00000453779.6:ENST00000275262.11:ENST00000392127.6:ENST00000361752.8:ENST00000361195.6:ENST00000424802.7:ENST00000545607.5:ENST00000537041.5:ENST00000544823.5:ENST00000537883.5:ENST00000540719.1:ENST00000544361.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	64	2	2.51488	3.0479399999999996	3.581	0.0380957	8.63544e-4	0.141678	0.0266494
chr12	111547684	111547784	5412710	0	-	0.38	(0.378,0.408]	chr12	516916	220	INTRON	INTRON	ATXN2	ENSG00000204842.18	ENST00000642389.2:ENST00000608853.5:ENST00000672613.1:ENST00000673436.1:ENST00000643669.2:ENST00000616825.4:ENST00000389153.10:ENST00000550104.5:ENST00000483311.6:ENST00000672335.1:ENST00000492467.6:ENST00000673557.1:ENST00000673283.1:ENST00000673449.1:ENST00000535949.5:ENST00000542287.6:ENST00000644883.1:ENST00000647305.1:ENST00000671792.1:ENST00000392645.6:ENST00000672105.1:ENST00000471866.5:ENST00000549455.1:ENST00000548492.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	117	2	2.38854	3.0479149999999997	3.70729	5.74431e-4	5.5156e-4	0.0217621	0.0216014
chr11	68466417	68466517	4817389	0	+	0.47	(0.44,0.476]	chr11	448907	52	INTRON	INTRON	PPP6R3	ENSG00000110075.15	ENST00000530427.5:ENST00000528635.5:ENST00000529907.5:ENST00000533127.5:ENST00000534534.5:ENST00000529344.5:ENST00000524845.5:ENST00000393800.7:ENST00000265637.8:ENST00000524904.5:ENST00000393801.7:ENST00000265636.9:ENST00000529710.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	67	2	2.54944	3.04788	3.54632	0.00591346	9.9951e-4	0.0694038	0.0288906
chr22	32479375	32479475	7507765	0	+	0.38	(0.378,0.408]	chr22	766227	1	SS5_PROX	SS5_PROX:INTRON	FBXO7	ENSG00000100225.18	ENST00000420700.5:ENST00000425028.5:ENST00000266087.12:ENST00000492535.1:ENST00000452138.3:ENST00000397426.5:ENST00000444207.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	52	2	2.66785	3.047675	3.4275	0.0224639	0.00126053	0.11692	0.03295
chr4	82835560	82835660	2179515	0	-	0.51	(0.476,0.515]	chr4	214267	42	INTRON	INTRON	SEC31A	ENSG00000138674.17	ENST00000395310.7:ENST00000513858.5:ENST00000348405.8:ENST00000503937.5:ENST00000448323.5:ENST00000311785.11:ENST00000509142.5:ENST00000443462.6:ENST00000500777.6:ENST00000505472.5:ENST00000355196.6:ENST00000508502.5:ENST00000264405.9:ENST00000505984.5:ENST00000511338.1:ENST00000515749.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	101	2	2.32197	3.047655	3.77334	0.00133705	3.52709e-4	0.0335955	0.0174637
chr16	58562256	58562355	6495686	0	-	0.474747	(0.44,0.476]	chr16	628558	15	INTRON	INTRON	CNOT1	ENSG00000125107.19	ENST00000317147.10:ENST00000569240.5:ENST00000567188.5:ENST00000441024.6:ENST00000569882.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	37	2	1.75627	3.04763	4.33899	0.0380723	0.0206616	0.157702	0.110999
chr17	22179439	22179539	6579458	0	+	0.41	(0.408,0.44]	chr17	639556	882	INTRON	INTRON	UBBP4	ENSG00000263563.7	ENST00000648259.1:ENST00000688301.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	4	42	2	1.49523	3.04751	4.59979	0.0534846	0.0109537	0.180041	0.0873034
chr10	35489253	35489353	4426037	0	+	0.4	(0.378,0.408]	chr10	407925	54	INTRON	INTRON	CCNY	ENSG00000108100.18	ENST00000374706.5:ENST00000490012.6:ENST00000493157.6:ENST00000374704.8:ENST00000265375.13:ENST00000339497.7:ENST00000492478.5:ENST00000470025.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	127	2	2.87622	3.04745	3.21868	4.53506e-4	1.39843e-4	0.0196892	0.0101841
chr12	121776870	121776970	5238114	0	+	0.53	(0.515,0.57]	chr12	497265	11	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	TMEM120B	ENSG00000188735.13	ENST00000449592.7:ENST00000342607.10:ENST00000541467.1:ENST00000416147.6:ENST00000411958.2:ENST00000538055.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	43	2	2.90311	3.0474449999999997	3.19178	0.0094233	0.00289534	0.0817766	0.0494641
chr17	28642481	28642576	6745144	0	-	0.547368	(0.515,0.57]	chr17	662677	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	KIAA0100	ENSG00000007202.15	ENST00000528896.7:ENST00000544884.5:ENST00000389003.7:ENST00000580882.5:ENST00000577417.5:ENST00000583403.5:ENST00000582901.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	43	2	2.90311	3.0474449999999997	3.19178	0.0094233	0.00289534	0.0817766	0.0494641
chr9	137642078	137642177	4223704	0	+	0.545455	(0.515,0.57]	chr9	388158	41	INTRON	INTRON	EHMT1	ENSG00000181090.21	ENST00000462484.5:ENST00000371394.6:ENST00000630754.2:ENST00000460843.6:ENST00000626216.2:ENST00000637593.1:ENST00000629335.2:ENST00000637335.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	43	2	2.90311	3.0474449999999997	3.19178	0.0094233	0.00289534	0.0817766	0.0494641
chr13	20025550	20025646	5453105	0	+	0.541667	(0.515,0.57]	chr13	522479	13	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	ZMYM2	ENSG00000121741.17	ENST00000382874.6:ENST00000610343.5:ENST00000382871.3:ENST00000382883.7:ENST00000468677.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	59	2	2.96814	3.047435	3.12673	0.00756432	3.95089e-4	0.0749063	0.0178567
chr7	119746314	119746414	3628801	0	-	0.24	[0,0.28]	chr7	337319	410	INTRON	INTRON	LINC02476	ENSG00000225546.6	ENST00000660268.1:ENST00000431071.5	lncRNA	lncRNA	lncRNA	lncRNA	7	200	2	2.14483	3.04741	3.94999	0.0068982	1.26027e-5	0.0717775	0.00264613
chr6	167904280	167904379	3035123	0	+	0.545455	(0.515,0.57]	chr6	282779	15	INTRON	INTRON	AFDN	ENSG00000130396.21	ENST00000683244.1:ENST00000351017.9:ENST00000344191.8:ENST00000392112.5:ENST00000392108.7:ENST00000400822.7:ENST00000447894.6:ENST00000366809.6:ENST00000366806.6:ENST00000423229.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	43	2	2.96814	3.0473850000000002	3.12663	0.00756432	0.00374498	0.0749063	0.0562234
chr16	70272764	70272862	6510323	0	-	0.520408	(0.515,0.57]	chr16	630585	4	INTRON	INTRON	AARS1	ENSG00000090861.17	ENST00000674963.1:ENST00000675643.1:ENST00000675917.1:ENST00000674691.1:ENST00000261772.13:ENST00000675569.1:ENST00000676209.1:ENST00000676211.1:ENST00000676040.1:ENST00000675953.1:ENST00000675691.1:ENST00000676004.1:ENST00000675270.1:ENST00000675403.1:ENST00000676212.1:ENST00000675045.1:ENST00000675035.1:ENST00000676168.1:ENST00000674652.1:ENST00000675133.1:ENST00000675120.1:ENST00000674811.1:ENST00000674512.1:ENST00000675853.1:ENST00000565361.3:ENST00000676247.1:ENST00000674848.1:ENST00000674962.1:ENST00000675371.1:ENST00000675986.1:ENST00000674768.1:ENST00000675297.1:ENST00000675751.1:ENST00000564359.6:ENST00000675338.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	43	2	1.49552	3.04733	4.59914	0.0385038	0.00616166	0.159277	0.0676501
chr14	30565439	30565539	5674448	0	+	0.3	(0.28,0.32]	chr14	540499	42	INTRON	INTRON	G2E3	ENSG00000092140.16	ENST00000206595.11:ENST00000438909.6:ENST00000544007.5:ENST00000550944.5:ENST00000552488.1:ENST00000648008.1:ENST00000553504.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	62	2	2.87382	3.0472799999999998	3.22074	0.014868	0.00362783	0.0989021	0.055479
chr17	46127234	46127334	6784208	0	-	0.3	(0.28,0.32]	chr17	669216	60	INTRON	INTRON	KANSL1	ENSG00000120071.15	ENST00000574590.6:ENST00000572904.6:ENST00000432791.7:ENST00000575318.6:ENST00000638275.1:ENST00000262419.10:ENST00000648792.1:ENST00000639531.1:ENST00000639150.1:ENST00000639853.1:ENST00000571698.2:ENST00000639375.1:ENST00000638269.1:ENST00000576248.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	62	2	2.87382	3.0472799999999998	3.22074	0.014868	0.00362783	0.0989021	0.055479
chr6	154743317	154743417	3001916	0	+	0.31	(0.28,0.32]	chr6	280737	9	INTRON	INTRON	SCAF8	ENSG00000213079.10	ENST00000367186.7:ENST00000417268.3:ENST00000461219.5:ENST00000367178.8:ENST00000464628.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	62	2	2.87382	3.0472799999999998	3.22074	0.014868	0.00362783	0.0989021	0.055479
chr22	21509142	21509242	7560182	0	-	0.48	(0.476,0.515]	chr22	773318	167	INTRON	INTRON	PI4KAP2	ENSG00000183506.17	ENST00000450651.5:ENST00000467443.5:ENST00000479693.1:ENST00000476537.1:ENST00000491562.5	transcribed_unitary_pseudogene	retained_intron	transcribed_unitary_pseudogene	retained_intron:processed_transcript	8	167	2	3.01743	3.0472650000000003	3.0771	9.21054e-5	4.04145e-5	0.00853581	0.00515882
chr4	32019008	32019108	1941638	0	+	0.39	(0.378,0.408]	chr4	194727	208	INTRON	INTRON	LINC02506	ENSG00000251129.3	ENST00000662669.1:ENST00000665582.2:ENST00000667252.2:ENST00000660373.2:ENST00000684849.1:ENST00000513211.2:ENST00000659613.1:ENST00000657576.1:ENST00000686730.1:ENST00000685407.1:ENST00000685455.1:ENST00000655951.1	lncRNA	lncRNA	lncRNA	lncRNA	5	96	2	2.1245	3.047135	3.96977	0.00724232	9.19167e-5	0.0729826	0.00801007
chr10	97263929	97264029	4674873	0	-	0.38	(0.378,0.408]	chr10	430802	3	SS3_PROX	SS3_PROX:INTRON	ARHGAP19	ENSG00000213390.11	ENST00000492211.5:ENST00000358308.7:ENST00000358531.9:ENST00000371027.5:ENST00000466484.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	37	2	1.59317	3.046865	4.50056	0.0603812	0.015974	0.19151	0.101453
chr6	137213832	137213932	3235819	0	-	0.4	(0.378,0.408]	chr6	300755	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	IFNGR1	ENSG00000027697.16	ENST00000458076.6:ENST00000696695.1:ENST00000367739.9:ENST00000696694.1:ENST00000645045.1:ENST00000643119.1:ENST00000696693.1:ENST00000414770.6:ENST00000696696.1:ENST00000644894.1:ENST00000646898.1:ENST00000646036.1:ENST00000645753.1:ENST00000642390.1:ENST00000647124.1:ENST00000696697.1:ENST00000696698.1:ENST00000696699.1:ENST00000478333.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	37	2	1.59317	3.046865	4.50056	0.0603812	0.015974	0.19151	0.101453
chr2	55419713	55419804	1124400	0	-	0.615385	(0.57,1]	chr2	120590	8	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CCDC88A	ENSG00000115355.18	ENST00000263630.13:ENST00000436346.7:ENST00000642200.1:ENST00000413716.7:ENST00000645311.1:ENST00000645477.1:ENST00000645072.1:ENST00000644630.1:ENST00000647517.1:ENST00000645529.1:ENST00000644033.1:ENST00000644157.1:ENST00000471947.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	99	2	2.61376	3.04674	3.47972	4.44308e-5	4.55922e-6	0.00540591	0.00157263
chr11	125608289	125608346	4882785	0	+	0.368421	(0.35,0.378]	chr11	456485	1	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	STT3A	ENSG00000134910.14	ENST00000534472.5:ENST00000529196.5:ENST00000392708.9:ENST00000649491.1:ENST00000531491.5:ENST00000525431.1:ENST00000526726.1:ENST00000531001.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	56	2	2.47065	3.046685	3.62272	0.0386172	5.64719e-4	0.142656	0.021704
chr3	101729722	101729817	1468966	0	+	0.357895	(0.35,0.378]	chr3	154001	4	INTRON	INTRON	CEP97	ENSG00000182504.11	ENST00000489172.5:ENST00000341893.8:ENST00000494050.5:ENST00000465011.1:ENST00000467655.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	56	2	2.47065	3.046685	3.62272	0.0386172	5.64719e-4	0.142656	0.021704
chr16	14618945	14619045	6449738	0	-	0.44	(0.408,0.44]	chr16	621350	9	INTRON	INTRON	PARN	ENSG00000140694.17	ENST00000651865.1:ENST00000437198.7:ENST00000651348.1:ENST00000650990.1:ENST00000651760.1:ENST00000652541.1:ENST00000652727.1:ENST00000652066.1:ENST00000651300.1:ENST00000420015.6:ENST00000652051.1:ENST00000341484.11:ENST00000539279.5:ENST00000651049.1:ENST00000650960.1:ENST00000651634.1:ENST00000564113.6:ENST00000652411.1:ENST00000652501.1:ENST00000651027.1:ENST00000651913.1:ENST00000563641.6:ENST00000651241.1:ENST00000538472.5:ENST00000566021.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	50	2	3.00595	3.046665	3.08738	0.00781452	0.00478231	0.0759016	0.0636201
chr8	144325051	144325150	4085677	0	-	0.424242	(0.408,0.44]	chr8	371780	33	INTRON	INTRON	DGAT1	ENSG00000185000.12	ENST00000528718.6:ENST00000332324.5:ENST00000531896.5:ENST00000525371.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	50	2	3.00595	3.046665	3.08738	0.00781452	0.00478231	0.0759016	0.0636201
chr21	5124157	5124255	7424447	0	-	0.469388	(0.44,0.476]	chr21	757271	16	INTRON	INTRON	ENSG00000280071	ENSG00000280071.4	ENST00000624810.3:ENST00000625036.3:ENST00000620528.5:ENST00000620015.4:ENST00000624120.3:ENST00000624648.3:ENST00000624748.2:ENST00000623810.2:ENST00000624714.3:ENST00000623390.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	89	2	2.78046	3.046605	3.31275	0.0028389	1.73222e-4	0.0473151	0.0114086
chr4	183121716	183121816	2084005	0	+	0.29	(0.28,0.32]	chr4	205959	217	INTRON	INTRON	WWC2	ENSG00000151718.16	ENST00000403733.8:ENST00000508614.5:ENST00000448232.6:ENST00000513834.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	62	2	2.91851	3.04652	3.17453	0.0130672	0.00429297	0.093385	0.0599065
chr3	19971812	19971911	1376284	0	+	0.343434	(0.32,0.35]	chr3	145058	7	INTRON	INTRON	RAB5A	ENSG00000144566.11	ENST00000273047.9:ENST00000412966.5:ENST00000446547.5:ENST00000422242.1:ENST00000469122.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	79	2	2.9451	3.046495	3.14789	0.011051	5.00642e-4	0.0873897	0.020217099999999998
chr3	183861404	183861503	1881367	0	-	0.353535	(0.35,0.378]	chr3	188018	45	INTRON	INTRON	PARL	ENSG00000175193.14	ENST00000639100.1:ENST00000317096.9:ENST00000638817.1:ENST00000311101.9:ENST00000435888.5:ENST00000639900.1:ENST00000421484.5:ENST00000449306.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	72	2	2.87835	3.046455	3.21456	0.00420814	0.00160563	0.0572185	0.0367961
chr11	64142770	64142869	4964398	0	-	0.59596	(0.57,1]	chr11	467271	160	INTRON	INTRON	MACROD1	ENSG00000133315.12	ENST00000255681.7:ENST00000675777.1:ENST00000545464.5:ENST00000542359.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	44	2	2.60916	3.046265	3.48337	0.00119055	6.20854e-4	0.0315806	0.0223951
chr2	10164846	10164946	691152	0	+	0.6	(0.57,1]	chr2	81109	87	INTRON	INTRON	RRM2	ENSG00000171848.16	ENST00000641498.1:ENST00000381786.7	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	4	44	2	2.60916	3.046265	3.48337	0.00119055	6.20854e-4	0.0315806	0.0223951
chr6	52281447	52281544	3105881	0	-	0.494845	(0.476,0.515]	chr6	290813	15	INTRON	INTRON	MCM3	ENSG00000112118.20	ENST00000616552.4:ENST00000229854.12:ENST00000596288.7:ENST00000419835.8	protein_coding	protein_coding	protein_coding	protein_coding	4	79	2	2.45107	3.04617	3.64127	0.00301722	6.42302e-4	0.0507519	0.0231685
chr1	200567445	200567543	617189	0	-	0.571429	(0.57,1]	chr1	72968	14	INTRON	INTRON	KIF14	ENSG00000118193.12	ENST00000614960.4:ENST00000367350.5	protein_coding	protein_coding	protein_coding	protein_coding	3	24	2	1.52865	3.04615	4.56365	0.0730445	0.00129848	0.189414	0.0333764
chr16	4727627	4727717	6438198	0	-	0.577778	(0.57,1]	chr16	620017	6	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	ANKS3	ENSG00000168096.15	ENST00000450067.6:ENST00000614075.4:ENST00000304283.9:ENST00000592077.5:ENST00000590193.5:ENST00000446014.6:ENST00000591653.5:ENST00000585773.5:ENST00000590730.5:ENST00000586605.5:ENST00000592421.5:ENST00000592068.5:ENST00000586166.5:ENST00000592698.5:ENST00000586159.5:ENST00000589065.5:ENST00000593120.5:ENST00000592711.5:ENST00000591281.5:ENST00000587005.5:ENST00000590147.5:ENST00000592190.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	24	2	1.52865	3.04615	4.56365	0.0730445	0.00129848	0.189414	0.0333764
chr16	88957390	88957490	6541101	0	-	0.6	(0.57,1]	chr16	634105	4	SS5_PROX	SS5_PROX:INTRON	CBFA2T3	ENSG00000129993.15	ENST00000268679.9:ENST00000563640.1:ENST00000570046.1	protein_coding	protein_coding	protein_coding	protein_coding	3	24	2	1.52865	3.04615	4.56365	0.0730445	0.00129848	0.189414	0.0333764
chr6	147217160	147217260	2988835	0	+	0.32	(0.28,0.32]	chr6	280001	107	INTRON	INTRON	STXBP5	ENSG00000164506.15	ENST00000321680.11:ENST00000367481.7:ENST00000546097.5:ENST00000367480.7	protein_coding	protein_coding	protein_coding	protein_coding	3	91	2	3.01486	3.04615	3.07744	0.00604536	0.00162624	0.0700813	0.0367966
chr8	129524873	129524972	4060531	0	-	0.393939	(0.378,0.408]	chr8	369648	143	INTRON	INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1:ENST00000676273.1:ENST00000667643.1:ENST00000668791.1:ENST00000663716.1:ENST00000663572.1:ENST00000676148.1:ENST00000667962.1:ENST00000674877.1:ENST00000675316.1:ENST00000674656.1:ENST00000446592.7:ENST00000667341.1:ENST00000675186.1:ENST00000652971.1:ENST00000661447.1:ENST00000674863.1:ENST00000675498.1:ENST00000675527.1:ENST00000676108.1:ENST00000657647.1:ENST00000675589.1:ENST00000675913.1:ENST00000675109.1:ENST00000671632.1:ENST00000671311.1:ENST00000676099.1:ENST00000660652.1:ENST00000675522.1:ENST00000675183.1:ENST00000658861.1:ENST00000663991.1:ENST00000675044.1:ENST00000675435.1:ENST00000674639.1:ENST00000676069.1:ENST00000675532.1:ENST00000674762.1:ENST00000523151.6:ENST00000675948.1:ENST00000665364.1:ENST00000657251.1:ENST00000675166.1:ENST00000674883.1:ENST00000675867.1:ENST00000674580.1:ENST00000675393.1:ENST00000520048.1:ENST00000674906.1:ENST00000676030.1:ENST00000670588.1:ENST00000675072.1:ENST00000664936.1:ENST00000652914.1:ENST00000657069.1	lncRNA	lncRNA	lncRNA	lncRNA	7	156	2	2.72114	3.0459	3.37066	3.34676e-4	4.61553e-5	0.01628	0.00588447
chr17	5461527	5461609	6714725	0	-	0.597561	(0.57,1]	chr17	658315	3	SS3_PROX	SS3_PROX:INTRON	DHX33	ENSG00000005100.13	ENST00000225296.8:ENST00000433302.7:ENST00000572490.1:ENST00000574023.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	48	2	2.88261	3.04589	3.20917	0.00118949	2.02775e-4	0.031662	0.0129814
chr1	173461362	173461461	586447	0	-	0.373737	(0.35,0.378]	chr1	70584	1	INTRON	INTRON	PRDX6-AS1	ENSG00000203739.5	ENST00000669220.1:ENST00000661267.1:ENST00000660739.1:ENST00000659863.1	lncRNA	lncRNA	lncRNA	lncRNA	2	56	2	2.79643	3.045865	3.2953	0.013543	0.0031465	0.101363	0.0500431
chr16	89797708	89797807	6544623	0	-	0.444444	(0.44,0.476]	chr16	634567	13	INTRON	INTRON	FANCA	ENSG00000187741.16	ENST00000561667.2:ENST00000389301.8:ENST00000568369.6:ENST00000564475.6:ENST00000696275.1:ENST00000696287.1:ENST00000696286.1:ENST00000696274.1:ENST00000696291.1:ENST00000696276.1:ENST00000567205.2:ENST00000567284.7:ENST00000696277.1:ENST00000696292.1:ENST00000563767.2:ENST00000567621.6:ENST00000566409.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	66	2	2.78129	3.0457	3.31011	0.00259023	0.00229634	0.0452934	0.0439319
chr1	44971307	44971403	437641	0	-	0.479167	(0.476,0.515]	chr1	52969	9	INTRON	INTRON	EIF2B3	ENSG00000070785.17	ENST00000620860.4:ENST00000360403.7:ENST00000372183.7:ENST00000480675.5:ENST00000477953.5:ENST00000372182.6:ENST00000487532.5:ENST00000497010.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	108	2	2.91455	3.045415	3.17628	4.32026e-4	3.6008e-4	0.0190829	0.0169207
chr19	1424980	1425079	6995276	0	+	0.373737	(0.35,0.378]	chr19	693200	22	INTRON	INTRON	DAZAP1	ENSG00000071626.17	ENST00000336761.10:ENST00000233078.9:ENST00000592522.5:ENST00000586579.5:ENST00000587079.5:ENST00000592453.2:ENST00000589484.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	21	398	2	2.44471	3.04526	3.64581	3.32772e-5	1.4063e-6	0.0046174	7.74888e-4
chrX	73852423	73852523	7838048	0	-	0.22	[0,0.28]	chrX	799611	151	EXON_LNCRNA	EXON_LNCRNA	XIST	ENSG00000229807.13	ENST00000429829.6	lncRNA	lncRNA	lncRNA	lncRNA	20	595	2	2.89649	3.045255	3.19402	1.09723e-4	1.75935e-6	0.00942675	8.00694e-4
chr12	120548600	120548700	5235909	0	+	0.42	(0.408,0.44]	chr12	496864	16	INTRON	INTRON	RNF10	ENSG00000022840.17	ENST00000325954.9:ENST00000542438.1:ENST00000538796.5:ENST00000413266.6:ENST00000551139.6:ENST00000536869.5:ENST00000537997.1:ENST00000543578.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	37	2	1.75791	3.0451449999999998	4.33238	0.0378795	0.0218901	0.157034	0.11491
chr7	8116433	8116532	3479787	0	-	0.343434	(0.32,0.35]	chr7	325660	20	INTRON	INTRON	ICA1	ENSG00000003147.19	ENST00000402384.8:ENST00000406470.6:ENST00000650486.1:ENST00000265577.11:ENST00000396675.7:ENST00000339809.10:ENST00000455539.5:ENST00000401396.5:ENST00000422063.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	128	2	2.27939	3.0451449999999998	3.8109	0.00844518	1.35065e-5	0.0776969	0.00274251
chr2	112663325	112663425	852249	0	+	0.37	(0.35,0.378]	chr2	95616	4	UTR3	UTR3:EXON_MRNA	SLC20A1	ENSG00000144136.11	ENST00000272542.8:ENST00000490674.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	21	444	2	2.51488	3.0451249999999996	3.57537	2.84262e-5	6.25321e-7	0.00422872	4.63859e-4
chr7	874273	874368	3269082	0	+	0.368421	(0.35,0.378]	chr7	303663	11	UTR3	UTR3:EXON_MRNA:INTRON	SUN1	ENSG00000164828.18	ENST00000452783.6:ENST00000389574.7:ENST00000401592.6:ENST00000413171.6:ENST00000405266.5:ENST00000425407.6:ENST00000429178.5:ENST00000433212.5:ENST00000457861.1:ENST00000475971.5:ENST00000497943.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	54	2	2.72497	3.0450549999999996	3.36514	0.0198266	0.00173699	0.109608	0.03851
chr1	202765906	202766004	620313	0	-	0.387755	(0.378,0.408]	chr1	73634	19	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	KDM5B	ENSG00000117139.18	ENST00000367265.9:ENST00000648338.1:ENST00000649542.1:ENST00000647757.1:ENST00000367264.7:ENST00000648473.1:ENST00000650569.1:ENST00000648056.1:ENST00000649770.1:ENST00000648469.1:ENST00000650417.1:ENST00000235790.9:ENST00000650422.1:ENST00000648738.1:ENST00000648744.1:ENST00000648958.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	83	2	2.73003	3.045005	3.35998	0.00230615	8.35208e-4	0.0428247	0.0263691
chr19	1799551	1799650	7113316	0	-	0.494949	(0.476,0.515]	chr19	714742	9	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	ATP8B3	ENSG00000130270.16	ENST00000310127.10:ENST00000531925.5:ENST00000525591.5:ENST00000526092.6:ENST00000533107.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	37	2	1.74317	3.044825	4.34648	0.0396373	0.0193566	0.161534	0.108861
chr17	47187653	47187752	6789379	0	-	0.282828	(0.28,0.32]	chr17	669639	57	INTRON	INTRON	CDC27	ENSG00000004897.12	ENST00000066544.8:ENST00000531206.5:ENST00000533415.5:ENST00000527547.5:ENST00000526866.5:ENST00000525495.6:ENST00000575483.5:ENST00000532893.5:ENST00000528748.5:ENST00000532575.1:ENST00000528147.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	43	2	1.6633	3.0448000000000004	4.4263	0.0522231	0.0330296	0.177274	0.133816
chr8	58432063	58432162	3757282	0	+	0.282828	(0.28,0.32]	chr8	349395	10	INTRON	INTRON	UBXN2B	ENSG00000215114.10	ENST00000522978.1:ENST00000399598.7:ENST00000523409.5:ENST00000520732.5:ENST00000521796.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	43	2	1.6633	3.0448000000000004	4.4263	0.0522231	0.0330296	0.177274	0.133816
chr17	63799179	63799279	6661214	0	+	0.29	(0.28,0.32]	chr17	649966	3	SS3_PROX	SS3_PROX:INTRON	DDX42	ENSG00000198231.14	ENST00000578681.5:ENST00000583590.5:ENST00000389924.7:ENST00000359353.9:ENST00000578137.5:ENST00000584261.5:ENST00000577940.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	175	2	2.86456	3.044775	3.22499	6.82828e-4	1.06706e-4	0.0239239	0.00875366
chr16	71902864	71902964	6386679	0	+	0.25	[0,0.28]	chr16	614075	3	SS3_PROX	SS3_PROX:INTRON	IST1	ENSG00000182149.21	ENST00000568581.5:ENST00000540296.5:ENST00000544564.5:ENST00000541571.6:ENST00000538104.5:ENST00000535424.5:ENST00000606369.5:ENST00000537613.5:ENST00000424485.6:ENST00000566536.5:ENST00000378799.11:ENST00000538565.5:ENST00000329908.12:ENST00000538850.5:ENST00000541918.5:ENST00000378798.9:ENST00000534994.5:ENST00000539186.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	71	2	2.64309	3.0446	3.44611	0.0308646	0.00185186	0.13151	0.039946
chr1	174008768	174008867	587909	0	-	0.525253	(0.515,0.57]	chr1	70758	153	INTRON	INTRON	RC3H1	ENSG00000135870.12	ENST00000367696.7	protein_coding	protein_coding	protein_coding	protein_coding	2	43	2	2.83501	3.044565	3.25412	0.0117686	0.00224554	0.0894475	0.0435144
chr17	50995960	50996033	6795737	0	-	0.383562	(0.378,0.408]	chr17	670903	1	SS3_PROX	SS3_PROX:INTRON	SPAG9	ENSG00000008294.22	ENST00000262013.12:ENST00000510283.5:ENST00000505279.5:ENST00000357122.8:ENST00000514613.5:ENST00000505173.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	95	2	2.51733	3.04453	3.57173	0.00808319	4.19615e-5	0.0766625	0.00524985
chr1	10614138	10614238	24375	0	+	0.46	(0.44,0.476]	chr1	2524	144	INTRON	INTRON	PEX14	ENSG00000142655.13	ENST00000356607.9:ENST00000491661.2	protein_coding	protein_coding	protein_coding	protein_coding	2	30	2	1.85146	3.044505	4.23755	0.0545846	0.0263357	0.182529	0.122221
chr1	77784350	77784450	147597	0	+	0.46	(0.44,0.476]	chr1	16483	6	INTRON	INTRON	MIGA1	ENSG00000180488.16	ENST00000443751.3:ENST00000643390.1:ENST00000643143.1:ENST00000645756.1:ENST00000642959.1:ENST00000370791.8:ENST00000646892.1:ENST00000645526.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	30	2	1.85146	3.044505	4.23755	0.0545846	0.0263357	0.182529	0.122221
chr3	128759434	128759534	1497543	0	+	0.46	(0.44,0.476]	chr3	156330	327	INTRON	INTRON	RAB7A	ENSG00000075785.14	ENST00000676214.1:ENST00000675864.1:ENST00000675712.1:ENST00000676425.1:ENST00000490093.6:ENST00000675342.1:ENST00000265062.8:ENST00000674748.1:ENST00000493186.6:ENST00000482525.5:ENST00000491681.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	30	2	1.85146	3.044505	4.23755	0.0545846	0.0263357	0.182529	0.122221
chr7	135605057	135605155	3428809	0	+	0.530612	(0.515,0.57]	chr7	319727	2	INTRON	INTRON	NUP205	ENSG00000155561.15	ENST00000285968.11:ENST00000607647.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	43	2	3.03037	3.0443800000000003	3.05839	0.00608732	0.00485936	0.0676501	0.0640618
chr7	130078504	130078604	3413674	0	+	0.56	(0.515,0.57]	chr7	319098	73	INTRON	INTRON	KLHDC10	ENSG00000128607.14	ENST00000335420.10:ENST00000463413.1:ENST00000468226.1	protein_coding	protein_coding	protein_coding	protein_coding	3	57	2	2.78208	3.044365	3.30665	0.00213226	0.00209264	0.0424943	0.041756
chr7	6041519	6041619	3476062	0	-	0.52	(0.515,0.57]	chr7	325197	3	SS3_PROX	SS3_PROX:INTRON	EIF2AK1	ENSG00000086232.13	ENST00000199389.11:ENST00000495565.5:ENST00000474029.5:ENST00000470168.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	57	2	2.73258	3.0443350000000002	3.35609	0.00260192	0.00174131	0.0470772	0.0375363
chr5	95757054	95757153	2431505	0	+	0.313131	(0.28,0.32]	chr5	233666	9	INTRON	INTRON	RHOBTB3	ENSG00000164292.13	ENST00000379982.8:ENST00000502541.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	62	2	2.96187	3.044335	3.1268	0.0114995	0.00508956	0.0889104	0.0646039
chr19	34175852	34175951	7050836	0	+	0.545455	(0.515,0.57]	chr19	703187	27	INTRON	INTRON	LSM14A	ENSG00000257103.9	ENST00000544216.8:ENST00000589878.5:ENST00000540746.6:ENST00000433627.9:ENST00000586157.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	44	2	2.60899	3.04429	3.47959	0.0232669	8.38022e-4	0.118148	0.0263691
chr3	48926525	48926621	1421529	0	+	0.541667	(0.515,0.57]	chr3	149474	12	INTRON	INTRON	ARIH2	ENSG00000177479.20	ENST00000478224.5:ENST00000430423.5:ENST00000452882.5:ENST00000498314.5:ENST00000474618.5:ENST00000449376.5:ENST00000490095.5:ENST00000356401.9:ENST00000495761.5:ENST00000483333.5:ENST00000482427.5:ENST00000488963.5:ENST00000420814.5:ENST00000486316.5:ENST00000449729.5:ENST00000433170.5:ENST00000474936.6:ENST00000466850.1:ENST00000484999.5:ENST00000470296.5:ENST00000463204.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	44	2	2.60899	3.04429	3.47959	0.0232669	8.38022e-4	0.118148	0.0263691
chr1	38020075	38020172	74345	0	+	0.43299	(0.408,0.44]	chr1	9612	3	INTRON	INTRON	UTP11	ENSG00000183520.12	ENST00000373014.5:ENST00000488453.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	67	2	2.60048	3.044205	3.48793	0.00484324	0.00130904	0.0640618	0.0331539
chr5	66920600	66920700	2376153	0	+	0.5	(0.476,0.515]	chr5	228769	32	INTRON	INTRON	MAST4	ENSG00000069020.19	ENST00000406374.5:ENST00000403625.7:ENST00000406039.5:ENST00000452953.5:ENST00000432817.5:ENST00000434115.5:ENST00000411628.5:ENST00000490016.6:ENST00000403666.5:ENST00000450827.5	protein_coding	protein_coding	protein_coding	protein_coding	6	126	2	2.84894	3.0442	3.23946	2.59571e-4	2.32094e-4	0.014326	0.0139633
chr1	31926256	31926355	414314	0	-	0.282828	(0.28,0.32]	chr1	49920	17	INTRON	INTRON	PTP4A2	ENSG00000184007.22	ENST00000647444.2:ENST00000649841.1:ENST00000468531.1:ENST00000534796.5:ENST00000532289.1:ENST00000526960.1:ENST00000524384.5:ENST00000528840.1:ENST00000494444.2:ENST00000529477.5:ENST00000533408.1:ENST00000475464.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	46	2	1.94591	3.0440250000000004	4.14214	0.0579756	0.0228482	0.167723	0.125519
chr7	76607596	76607696	3340944	0	+	0.55	(0.515,0.57]	chr7	311170	557	INTRON	INTRON	ENSG00000205485	ENSG00000205485.13	ENST00000418663.5:ENST00000450661.1:ENST00000423084.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	5	79	2	2.16301	3.044005	3.925	0.00510122	8.71525e-5	0.0626075	0.00783545
chr1	51511301	51511401	454278	0	-	0.46	(0.44,0.476]	chr1	54447	296	INTRON	INTRON	EPS15	ENSG00000085832.17	ENST00000371733.8:ENST00000371730.6:ENST00000371727.5:ENST00000471391.1:ENST00000465467.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	31	2	2.0776	3.04399	4.01038	0.0433743	0.0292951	0.148082	0.141862
chr14	102693798	102693897	5823546	0	+	0.333333	(0.32,0.35]	chr14	552496	115	INTRON	INTRON	RCOR1	ENSG00000089902.10	ENST00000262241.7	protein_coding	protein_coding	protein_coding	protein_coding	2	59	2	2.51061	3.0439600000000002	3.57731	0.0364463	7.67492e-4	0.138959	0.0254532
chr15	59027510	59027610	6039282	0	+	0.44	(0.408,0.44]	chr15	574979	230	INTRON	INTRON	RNF111	ENSG00000157450.16	ENST00000559757.1:ENST00000348370.9:ENST00000559160.1:ENST00000559209.5:ENST00000557998.5	protein_coding	protein_coding	protein_coding	protein_coding	3	67	2	2.45003	3.04394	3.63785	0.00990006	4.70012e-4	0.0838372	0.0196294
chr7	127706392	127706487	3402950	0	+	0.484211	(0.476,0.515]	chr7	318118	11	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8	protein_coding	protein_coding	protein_coding	protein_coding	4	81	2	1.97402	3.04394	4.11386	0.0206778	4.0075e-5	0.110999	0.00513517
chr7	32736765	32736864	3304271	0	+	0.414141	(0.408,0.44]	chr7	306861	33	INTRON	INTRON	ZNRF2P1	ENSG00000237004.4	ENST00000650302.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	3	67	2	2.49218	3.04391	3.59564	0.00855168	5.73354e-4	0.0780217	0.0217398
chr17	46123436	46123536	6784170	0	-	0.36	(0.35,0.378]	chr17	669216	22	INTRON	INTRON	KANSL1	ENSG00000120071.15	ENST00000574590.6:ENST00000572904.6:ENST00000432791.7:ENST00000575318.6:ENST00000638275.1:ENST00000262419.10:ENST00000648792.1:ENST00000639531.1:ENST00000639150.1:ENST00000639853.1:ENST00000571698.2:ENST00000639375.1:ENST00000638269.1:ENST00000576248.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	72	2	2.91516	3.0438	3.17244	0.00487788	0.0013628	0.0607461	0.0339121
chr1	66931094	66931191	139497	0	+	0.309278	(0.28,0.32]	chr1	15642	3	INTRON	INTRON	MIER1	ENSG00000198160.15	ENST00000355977.10:ENST00000371018.7:ENST00000357692.6:ENST00000371016.5:ENST00000371014.5:ENST00000371012.6:ENST00000401041.6:ENST00000355356.3:ENST00000401042.7	protein_coding	protein_coding	protein_coding	protein_coding	3	84	2	3.00291	3.043765	3.08462	0.0078976	0.00110829	0.076155	0.0305035
chr12	120871713	120871812	5435581	0	-	0.454545	(0.44,0.476]	chr12	519663	362	INTRON	INTRON	SPPL3	ENSG00000157837.16	ENST00000353487.7:ENST00000536996.5:ENST00000543608.5:ENST00000543854.5	protein_coding	protein_coding	protein_coding	protein_coding	2	50	2	2.67572	3.04374	3.41176	0.0212064	0.00130987	0.113017	0.0333932
chr1	203863262	203863362	297319	0	+	0.48	(0.476,0.515]	chr1	34238	2	SS3_PROX	SS3_PROX:INTRON	SNRPE	ENSG00000182004.13	ENST00000414487.7:ENST00000475035.5:ENST00000483099.5:ENST00000470492.5:ENST00000469451.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	195	2	2.85682	3.043485	3.23015	1.52104e-4	1.12276e-5	0.0106137	0.00265258
chr20	36772993	36773093	7337877	0	-	0.43	(0.408,0.44]	chr20	747693	2	SS5_PROX	SS5_PROX:INTRON	DSN1	ENSG00000149636.16	ENST00000426836.5:ENST00000373734.8:ENST00000480153.5:ENST00000473615.5:ENST00000373750.9:ENST00000448110.6:ENST00000373740.7:ENST00000447406.1:ENST00000438549.5:ENST00000492703.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	110	2	2.92893	3.0434599999999996	3.15799	4.29493e-4	3.8998e-4	0.0190249	0.0177751
chr1	227257433	227257532	651109	0	-	0.464646	(0.44,0.476]	chr1	77108	29	INTRON	INTRON	CDC42BPA	ENSG00000143776.20	ENST00000366766.8:ENST00000366769.7:ENST00000334218.9:ENST00000366767.7:ENST00000366764.8:ENST00000478573.6:ENST00000682551.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	50	2	2.9586	3.043295	3.12799	0.00758318	0.0050635	0.0773151	0.0621733
chr14	74000251	74000350	5921483	0	-	0.464646	(0.44,0.476]	chr14	562471	31	INTRON	INTRON	ENTPD5	ENSG00000187097.13	ENST00000557325.5:ENST00000334696.11:ENST00000556242.5:ENST00000554664.5:ENST00000556108.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	50	2	2.9586	3.043295	3.12799	0.00758318	0.0050635	0.0773151	0.0621733
chr19	6531995	6532092	7006597	0	+	0.608247	(0.57,1]	chr19	695200	3	INTRON	INTRON	TNFSF9	ENSG00000125657.5	ENST00000245817.5	protein_coding	protein_coding	protein_coding	protein_coding	4	46	2	2.85802	3.04329	3.22856	0.00205928	3.01883e-4	0.0420839	0.0160895
chr21	10433667	10433767	7368331	0	+	0.34	(0.32,0.35]	chr21	751975	184	INTRON	INTRON	BAGE2	ENSG00000187172.15	ENST00000474011.5:ENST00000470054.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	2	59	2	2.84569	3.04328	3.24087	0.0121137	0.00420518	0.0962599	0.0572185
chr15	90232822	90232916	6258298	0	-	0.62766	(0.57,1]	chr15	597220	5	EXON_MRNA	EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CIB1	ENSG00000185043.13	ENST00000328649.11:ENST00000695870.1:ENST00000612800.1:ENST00000650306.1:ENST00000695872.1:ENST00000695873.1:ENST00000695874.1:ENST00000695875.1:ENST00000695876.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	20	2	1.77365	3.04321	4.31277	0.0670385	0.00346264	0.183051	0.0539802
chr8	123080719	123080818	3850309	0	+	0.575758	(0.57,1]	chr8	354666	31	INTRON	INTRON	TBC1D31	ENSG00000156787.17	ENST00000520368.5:ENST00000519418.5:ENST00000287380.6:ENST00000522420.5:ENST00000327098.9:ENST00000518099.5:ENST00000521676.5:ENST00000524307.5:ENST00000522276.1:ENST00000518684.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	20	2	1.77365	3.04321	4.31277	0.0670385	0.00346264	0.183051	0.0539802
chr20	50894812	50894912	7355507	0	-	0.55	(0.515,0.57]	chr20	750081	3	SS3_PROX	SS3_PROX:INTRON	ADNP	ENSG00000101126.18	ENST00000371602.9:ENST00000621696.5:ENST00000673732.1:ENST00000396029.8:ENST00000644386.1:ENST00000396032.8:ENST00000349014.8:ENST00000645081.1:ENST00000642364.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	34	2	1.88259	3.0431999999999997	4.20381	0.0251849	0.0189208	0.133519	0.108861
chr1	92331009	92331108	161698	0	+	0.343434	(0.32,0.35]	chr1	17479	63	INTRON	INTRON	RPAP2	ENSG00000122484.9	ENST00000610020.2	protein_coding	protein_coding	protein_coding	protein_coding	2	33	2	1.81328	3.0431399999999997	4.273	0.0615716	0.0368357	0.193423	0.138959
chr17	58793032	58793132	6638015	0	+	0.34	(0.32,0.35]	chr17	648237	362	INTRON	INTRON	PPM1E	ENSG00000175175.6	ENST00000308249.4	protein_coding	protein_coding	protein_coding	protein_coding	2	33	2	1.81328	3.0431399999999997	4.273	0.0615716	0.0368357	0.193423	0.138959
chr2	190896867	190896967	959643	0	+	0.34	(0.32,0.35]	chr2	104167	4	INTRON	INTRON	GLS	ENSG00000115419.13	ENST00000320717.8:ENST00000338435.8:ENST00000469774.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	33	2	1.81328	3.0431399999999997	4.273	0.0615716	0.0368357	0.193423	0.138959
chr3	149078143	149078243	1840916	0	-	0.33	(0.32,0.35]	chr3	185197	17	INTRON	INTRON	HLTF	ENSG00000071794.16	ENST00000310053.10:ENST00000465259.5:ENST00000392912.6:ENST00000494055.5	protein_coding	protein_coding	protein_coding	protein_coding	2	33	2	1.81328	3.0431399999999997	4.273	0.0615716	0.0368357	0.193423	0.138959
chr6	155260967	155261067	3251178	0	-	0.33	(0.32,0.35]	chr6	302099	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	TFB1M	ENSG00000029639.11	ENST00000367166.5:ENST00000468889.5:ENST00000470239.1:ENST00000495806.1:ENST00000489874.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	33	2	1.81328	3.0431399999999997	4.273	0.0615716	0.0368357	0.193423	0.138959
chrX	75139001	75139101	7842856	0	-	0.35	(0.32,0.35]	chrX	799896	238	INTRON	INTRON	ABCB7	ENSG00000131269.19	ENST00000373394.8:ENST00000253577.9:ENST00000666534.1:ENST00000669573.1:ENST00000644766.1:ENST00000339447.8:ENST00000645829.3:ENST00000620875.5:ENST00000663420.1:ENST00000529949.5:ENST00000669388.1:ENST00000534524.5:ENST00000526404.2:ENST00000643632.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	33	2	1.81328	3.0431399999999997	4.273	0.0615716	0.0368357	0.193423	0.138959
chr12	28230593	28230693	5100673	0	+	0.36	(0.35,0.378]	chr12	481914	40	INTRON	INTRON	CCDC91	ENSG00000123106.11	ENST00000540794.5:ENST00000538586.5:ENST00000536154.5:ENST00000535520.5:ENST00000539107.5:ENST00000544649.5:ENST00000545336.5:ENST00000536442.6:ENST00000544780.5:ENST00000543534.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	88	2	2.24196	3.04289	3.84382	0.00744693	3.33157e-4	0.0772645	0.016912
chr5	28920516	28920616	2330955	0	+	0.42	(0.408,0.44]	chr5	225135	1100	INTRON	INTRON	LINC02109	ENSG00000259786.7	ENST00000658190.1	lncRNA	lncRNA	lncRNA	lncRNA	3	67	2	2.53313	3.04264	3.55215	0.00739595	7.01039e-4	0.074277	0.0241881
chr20	4010150	4010250	7309354	0	-	0.52	(0.515,0.57]	chr20	744300	354	INTRON	INTRON	RNF24	ENSG00000101236.17	ENST00000336095.10:ENST00000358395.11:ENST00000545616.2	protein_coding	protein_coding	protein_coding	protein_coding	3	57	2	2.68132	3.0426	3.40388	0.00324198	0.00142538	0.0524329	0.0340865
chr16	2976189	2976282	6432833	0	-	0.344086	(0.32,0.35]	chr16	619089	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PKMYT1	ENSG00000127564.17	ENST00000431515.6:ENST00000440027.6:ENST00000262300.13:ENST00000574385.5:ENST00000574730.5:ENST00000573944.5:ENST00000382240.9:ENST00000576268.1:ENST00000574415.5:ENST00000575632.5:ENST00000572059.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	49	2	1.81388	3.0425050000000002	4.27113	0.0371014	0.0199982	0.139201	0.120668
chr11	10806529	10806626	4915275	0	-	0.257732	[0,0.28]	chr11	460589	6	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	EIF4G2	ENSG00000110321.19	ENST00000526148.6:ENST00000525681.6:ENST00000339995.11:ENST00000532383.5:ENST00000396525.7:ENST00000531416.6:ENST00000531647.6:ENST00000532082.6:ENST00000524932.6:ENST00000527419.6:ENST00000531507.5:ENST00000525972.5:ENST00000528562.6:ENST00000532570.6:ENST00000530211.6:ENST00000527526.6:ENST00000530702.2:ENST00000525995.1:ENST00000533485.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	15	447	2	2.73611	3.0424949999999997	3.34888	1.89144e-4	5.32238e-6	0.012565	0.00159388
chr10	21694271	21694370	4406032	0	+	0.343434	(0.32,0.35]	chr10	406535	54	INTRON	INTRON	MLLT10	ENSG00000078403.17	ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000651298.1:ENST00000377059.7:ENST00000651382.1:ENST00000438473.6:ENST00000420525.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	35	2	2.13945	3.04237	3.94529	0.0693433	0.0254517	0.184298	0.133676
chr7	148842481	148842581	3670342	0	-	0.33	(0.32,0.35]	chr7	340616	51	INTRON	INTRON	EZH2	ENSG00000106462.12	ENST00000683292.1:ENST00000320356.7:ENST00000492143.5:ENST00000478654.5:ENST00000350995.6:ENST00000460911.5:ENST00000683744.1:ENST00000682317.1:ENST00000682263.1:ENST00000684300.1:ENST00000476773.5:ENST00000483967.5:ENST00000498186.5:ENST00000483012.1:ENST00000682401.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	35	2	2.13945	3.04237	3.94529	0.0693433	0.0254517	0.184298	0.133676
chr4	73203898	73203997	2160277	0	-	0.343434	(0.32,0.35]	chr4	212794	260	INTRON	INTRON	ANKRD17	ENSG00000132466.20	ENST00000358602.9:ENST00000558247.5:ENST00000330838.10:ENST00000509867.6:ENST00000561029.1:ENST00000559367.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	125	2	2.69611	3.0420350000000003	3.38796	0.00166606	1.48523e-4	0.0369207	0.0105885
chr3	155894199	155894292	1537365	0	+	0.408602	(0.408,0.44]	chr3	160096	1	INTRON	INTRON	GMPS	ENSG00000163655.16	ENST00000496455.7:ENST00000295920.7	protein_coding	protein_coding	protein_coding	protein_coding	8	165	2	2.99145	3.04202	3.09259	3.14287e-4	1.41518e-5	0.0163194	0.00280557
chr16	84777800	84777899	6410704	0	+	0.565657	(0.515,0.57]	chr16	615352	22	INTRON	INTRON	USP10	ENSG00000103194.16	ENST00000540269.6:ENST00000219473.12:ENST00000570191.5:ENST00000563048.5:ENST00000569925.1:ENST00000567526.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	91	2	2.86184	3.04201	3.22218	3.55958e-4	2.98683e-4	0.0168968	0.0160416
chr1	149206788	149206888	547959	0	-	0.41	(0.408,0.44]	chr1	64451	53	INTRON	INTRON	ENSG00000215861	ENSG00000215861.7	ENST00000685012.1:ENST00000313342.8:ENST00000663163.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	2	30	2	1.85305	3.0420049999999996	4.23096	0.0543543	0.0278028	0.182243	0.123904
chr17	82819323	82819423	6694887	0	+	0.43	(0.408,0.44]	chr17	654903	40	INTRON	INTRON	TBCD	ENSG00000141556.22	ENST00000682479.1:ENST00000682722.1:ENST00000684464.1:ENST00000684544.1:ENST00000681983.1:ENST00000684361.1:ENST00000683184.1:ENST00000683282.1:ENST00000684408.1:ENST00000355528.9:ENST00000683444.1:ENST00000684776.1:ENST00000683041.1:ENST00000684760.1:ENST00000684349.1:ENST00000682213.1:ENST00000683009.1:ENST00000682921.1:ENST00000539345.6:ENST00000684000.1:ENST00000684188.1:ENST00000684429.1:ENST00000682610.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	30	2	1.85305	3.0420049999999996	4.23096	0.0543543	0.0278028	0.182243	0.123904
chr18	2972160	2972259	6944686	0	-	0.414141	(0.408,0.44]	chr18	686824	110	INTRON	INTRON	LPIN2	ENSG00000101577.10	ENST00000261596.8:ENST00000677752.1:ENST00000584915.1	protein_coding	protein_coding	protein_coding	protein_coding	2	30	2	1.85305	3.0420049999999996	4.23096	0.0543543	0.0278028	0.182243	0.123904
chr8	60263523	60263623	3956722	0	-	0.42	(0.408,0.44]	chr8	362980	308	INTRON	INTRON	CA8	ENSG00000178538.10	ENST00000317995.5:ENST00000524872.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	30	2	1.85305	3.0420049999999996	4.23096	0.0543543	0.0278028	0.182243	0.123904
chr4	99037766	99037853	2003139	0	+	0.333333	(0.32,0.35]	chr4	199844	1	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	METAP1	ENSG00000164024.12	ENST00000510209.5:ENST00000296411.11:ENST00000507537.5:ENST00000506238.5:ENST00000503247.5:ENST00000510107.5:ENST00000513199.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	92	2	2.56589	3.041985	3.51808	0.00204522	0.00151238	0.041908	0.0352794
chr15	22516275	22516375	5974730	0	+	0.35	(0.32,0.35]	chr15	568077	203	INTRON	INTRON	HERC2P2	ENSG00000276550.5	ENST00000613386.4	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	3	77	2	2.96232	3.04189	3.12146	0.00630799	0.00118924	0.0687526	0.031662
chr16	89436219	89436318	6543058	0	-	0.525253	(0.515,0.57]	chr16	634281	45	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	69	2	2.15866	3.04183	3.925	0.0100547	8.71525e-5	0.0848452	0.00783545
chr1	246880398	246880498	681424	0	-	0.48	(0.476,0.515]	chr1	79929	27	INTRON	INTRON	AHCTF1	ENSG00000153207.16	ENST00000648844.2:ENST00000326225.3:ENST00000366508.5:ENST00000470300.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	110	2	1.85394	3.0416749999999997	4.22941	0.00763096	3.53814e-5	0.0777238	0.00502438
chr9	130774154	130774254	4214466	0	+	0.3	(0.28,0.32]	chr9	386427	593	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000393293.4	protein_coding	protein_coding	protein_coding	protein_coding	4	103	2	2.18212	3.0416749999999997	3.90123	0.010265700000000001	3.8229e-4	0.089002	0.0181457
chr1	26706630	26706730	51277	0	+	0.44	(0.408,0.44]	chr1	6542	87	INTRON	INTRON	ARID1A	ENSG00000117713.21	ENST00000430799.7:ENST00000324856.13:ENST00000637465.1:ENST00000457599.6	protein_coding	protein_coding	protein_coding	protein_coding	2	31	2	2.07919	3.0415200000000002	4.00385	0.0454568	0.0291499	0.149888	0.14147
chr16	81018134	81018234	6403930	0	+	0.42	(0.408,0.44]	chr16	614883	3	SS5_PROX	SS5_PROX:INTRON	CENPN	ENSG00000166451.14	ENST00000299572.9:ENST00000439957.7:ENST00000393335.7:ENST00000305850.10:ENST00000569461.1:ENST00000428963.6:ENST00000564669.5:ENST00000562943.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	31	2	2.07919	3.0415200000000002	4.00385	0.0454568	0.0291499	0.149888	0.14147
chr2	230719855	230719955	1030229	0	+	0.42	(0.408,0.44]	chr2	110002	54	INTRON	INTRON	CAB39	ENSG00000135932.12	ENST00000258418.10:ENST00000409788.7:ENST00000410084.7	protein_coding	protein_coding	protein_coding	protein_coding	2	31	2	2.07919	3.0415200000000002	4.00385	0.0454568	0.0291499	0.149888	0.14147
chrX	110101689	110101789	7701028	0	+	0.41	(0.408,0.44]	chrX	788144	191	INTRON	INTRON	TMEM164	ENSG00000157600.12	ENST00000372072.7:ENST00000372073.5:ENST00000372068.7:ENST00000288381.4:ENST00000461715.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	31	2	2.07919	3.0415200000000002	4.00385	0.0454568	0.0291499	0.149888	0.14147
chr3	37078781	37078880	1655638	0	-	0.414141	(0.408,0.44]	chr3	169908	33	INTRON	INTRON	LRRFIP2	ENSG00000093167.18	ENST00000336686.9:ENST00000354379.8:ENST00000421276.6:ENST00000396428.6:ENST00000440230.5:ENST00000440742.2:ENST00000416425.5	protein_coding	protein_coding	protein_coding	protein_coding	2	50	2	2.71911	3.0414450000000004	3.36378	0.0189489	0.0016048	0.108861	0.0367961
chr20	38430862	38430945	7342268	0	-	0.626506	(0.57,1]	chr20	748322	2	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SNHG17	ENSG00000196756.14	ENST00000654008.2:ENST00000658076.1:ENST00000662982.2:ENST00000456953.7:ENST00000654183.2:ENST00000663540.2:ENST00000651115.2:ENST00000660885.2:ENST00000662213.1:ENST00000665233.2:ENST00000666268.2:ENST00000665735.1:ENST00000660558.2:ENST00000691280.1:ENST00000658488.2:ENST00000688336.1:ENST00000668054.2:ENST00000690441.1:ENST00000655520.2:ENST00000687490.1:ENST00000664626.1:ENST00000658051.1:ENST00000668042.1:ENST00000686971.1:ENST00000663187.1:ENST00000657868.1:ENST00000663534.1:ENST00000689917.1:ENST00000664073.2:ENST00000653697.1:ENST00000656320.1:ENST00000686814.1:ENST00000417578.7:ENST00000654853.1:ENST00000436764.7:ENST00000668482.2:ENST00000671249.1:ENST00000655692.1:ENST00000693250.1:ENST00000691368.1:ENST00000693227.1:ENST00000690361.1:ENST00000670051.1:ENST00000667912.1:ENST00000693665.1:ENST00000665181.1:ENST00000687532.1:ENST00000691386.1:ENST00000693684.1:ENST00000666331.1:ENST00000669480.1:ENST00000658905.1:ENST00000661252.1:ENST00000669137.1:ENST00000688133.1:ENST00000689414.1:ENST00000691314.1:ENST00000669033.1:ENST00000686145.1:ENST00000653938.1:ENST00000663784.1:ENST00000665003.1:ENST00000656023.1:ENST00000692262.1:ENST00000414142.5:ENST00000670958.1:ENST00000657216.2:ENST00000664636.1:ENST00000657843.1:ENST00000423536.6:ENST00000666419.1:ENST00000413755.5:ENST00000424235.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	3	24	2	1.63919	3.0414250000000003	4.44366	0.05421	0.00210922	0.164887	0.0425419
chr6	36443317	36443417	2853915	0	+	0.61	(0.57,1]	chr6	269696	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	KCTD20	ENSG00000112078.14	ENST00000536244.5:ENST00000373731.7:ENST00000483557.5:ENST00000443316.2:ENST00000474988.5:ENST00000498267.5:ENST00000481911.5:ENST00000449081.6:ENST00000265344.8:ENST00000460983.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	24	2	1.63919	3.0414250000000003	4.44366	0.05421	0.00210922	0.164887	0.0425419
chr1	109384177	109384277	520882	0	-	0.43	(0.408,0.44]	chr1	61195	142	INTRON	INTRON	SORT1	ENSG00000134243.12	ENST00000538502.5:ENST00000256637.8:ENST00000493736.5:ENST00000482236.5:ENST00000633956.1:ENST00000471996.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	47	2	1.40381	3.041375	4.67894	0.0521927	0.0087648	0.177259	0.0788605
chr3	149070655	149070751	1840836	0	-	0.291667	(0.28,0.32]	chr3	185169	20	INTRON	INTRON	HLTF	ENSG00000071794.16	ENST00000310053.10:ENST00000465259.5:ENST00000392912.6:ENST00000494055.5	protein_coding	protein_coding	protein_coding	protein_coding	5	57	2	1.49395	3.04135	4.58875	0.0423482	0.0230574	0.161744	0.118056
chr8	129997949	129998049	4063747	0	-	0.48	(0.476,0.515]	chr8	369844	266	INTRON	INTRON	CYRIB	ENSG00000153310.21	ENST00000694912.1:ENST00000523288.5:ENST00000519110.5:ENST00000401979.6:ENST00000523509.5:ENST00000517654.5:ENST00000518879.5:ENST00000522702.5:ENST00000521223.5:ENST00000518283.5:ENST00000523993.5:ENST00000519020.5:ENST00000518167.5:ENST00000522361.1:ENST00000523514.1:ENST00000518285.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	31	2	2.06491	3.04134	4.01777	0.0411361	0.0304733	0.1451	0.143385
chr19	1422596	1422696	6995252	0	+	0.44	(0.408,0.44]	chr19	693199	2	SS5_PROX	SS5_PROX:INTRON	DAZAP1	ENSG00000071626.17	ENST00000336761.10:ENST00000233078.9:ENST00000592522.5:ENST00000586579.5:ENST00000587079.5:ENST00000592453.2:ENST00000589484.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	55	1087	2	2.96841	3.041245	3.11408	2.84094e-7	9.07892e-8	2.89133e-4	1.30742e-4
chr1	71040580	71040680	482767	0	-	0.38	(0.378,0.408]	chr1	57831	277	INTRON	INTRON	PTGER3	ENSG00000050628.21	ENST00000628037.2:ENST00000370931.7:ENST00000361210.6:ENST00000479353.5:ENST00000497146.5:ENST00000460330.5:ENST00000356595.8:ENST00000306666.10:ENST00000370924.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	127	2	2.93789	3.0411200000000003	3.14435	6.4029e-4	9.74524e-5	0.0231685	0.00830626
chr19	15260876	15260973	7146676	0	-	0.402062	(0.378,0.408]	chr19	721912	7	INTRON	INTRON	BRD4	ENSG00000141867.19	ENST00000679869.1:ENST00000263377.6:ENST00000371835.8:ENST00000360016.9:ENST00000594841.5:ENST00000602230.1:ENST00000678800.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	34	2	1.76032	3.04103	4.32174	0.0721577	0.0132362	0.187433	0.0999551
chr6	16135308	16135407	2825835	0	+	0.373737	(0.35,0.378]	chr6	265309	42	INTRON	INTRON	MYLIP	ENSG00000007944.15	ENST00000356840.8:ENST00000349606.4	protein_coding	protein_coding	protein_coding	protein_coding	12	266	2	2.96516	3.04099	3.11682	8.30917e-5	3.9546e-6	0.00814237	0.00131614
chr4	126605195	126605295	2236761	0	-	0.36	(0.35,0.378]	chr4	219023	1397	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	4	89	2	2.90945	3.040945	3.17244	0.00487788	3.57589e-4	0.0607461	0.0169202
chr1	27832816	27832916	55056	0	+	0.42	(0.408,0.44]	chr1	7110	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	PPP1R8	ENSG00000117751.18	ENST00000311772.10:ENST00000236412.11:ENST00000373931.8:ENST00000431586.1	protein_coding	protein_coding	protein_coding	protein_coding	2	33	2	1.74775	3.0408749999999998	4.334	0.0735403	0.011982	0.190238	0.0962115
chr5	145808815	145808915	2746375	0	-	0.43	(0.408,0.44]	chr5	258695	119	INTRON	INTRON	PRELID2	ENSG00000186314.12	ENST00000683046.1:ENST00000334744.8:ENST00000394450.6:ENST00000505416.5:ENST00000511435.1	protein_coding	protein_coding	protein_coding	protein_coding	2	33	2	1.74775	3.0408749999999998	4.334	0.0735403	0.011982	0.190238	0.0962115
chr6	99545938	99546038	2917929	0	+	0.42	(0.408,0.44]	chr6	275834	129	INTRON	INTRON	TSTD3	ENSG00000279170.3	ENST00000623858.2:ENST00000607332.2:ENST00000651400.1:ENST00000652704.1	protein_coding	processed_transcript	protein_coding	processed_transcript	2	33	2	1.74775	3.0408749999999998	4.334	0.0735403	0.011982	0.190238	0.0962115
chr12	50528227	50528327	5137382	0	+	0.32	(0.28,0.32]	chr12	484468	226	INTRON	INTRON	DIP2B	ENSG00000066084.13	ENST00000301180.10:ENST00000549620.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	84	2	2.53648	3.04081	3.54514	0.00925866	0.00100603	0.0817766	0.0292285
chr18	2725677	2725768	6865590	0	+	0.263736	[0,0.28]	chr18	680056	3	INTRON	INTRON	SMCHD1	ENSG00000101596.17	ENST00000320876.11:ENST00000688342.1:ENST00000693213.1:ENST00000577880.5:ENST00000584897.5:ENST00000583441.2:ENST00000690757.1:ENST00000581383.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	114	2	2.48142	3.0408049999999998	3.60019	0.00375221	0.00172089	0.0562562	0.0374701
chr4	471175	471275	2092891	0	-	0.26	[0,0.28]	chr4	206783	264	INTRON	INTRON	ABCA11P:ZNF721	ENSG00000251595.7:ENSG00000182903.16	ENST00000451020.6:ENST00000514396.5:ENST00000507854.1:ENST00000515578.5:ENST00000506646.5:ENST00000507078.1:ENST00000511833.3:ENST00000338977.5:ENST00000505900.1	protein_coding	protein_coding	protein_coding:transcribed_processed_pseudogene	protein_coding:nonsense_mediated_decay:processed_transcript	4	114	2	2.48142	3.0408049999999998	3.60019	0.00375221	0.00172089	0.0562562	0.0374701
chr16	47141684	47141783	6480588	0	-	0.313131	(0.28,0.32]	chr16	626929	93	INTRON	INTRON	NETO2	ENSG00000171208.10	ENST00000562435.6:ENST00000303155.9	protein_coding	protein_coding	protein_coding	protein_coding	2	62	2	3.00395	3.0406950000000004	3.07744	0.0101329	0.00604536	0.0850389	0.0700813
chr3	180913876	180913968	1568613	0	+	0.315217	(0.28,0.32]	chr3	162353	8	INTRON	INTRON	FXR1	ENSG00000114416.18	ENST00000469882.5:ENST00000484790.5:ENST00000465551.5:ENST00000305586.11:ENST00000475315.5:ENST00000491674.1:ENST00000357559.9:ENST00000468861.5:ENST00000491062.5:ENST00000479176.5:ENST00000445140.6:ENST00000472339.5:ENST00000484958.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	62	2	3.00395	3.0406950000000004	3.07744	0.0101329	0.00604536	0.0850389	0.0700813
chr6	4795303	4795403	2791051	0	+	0.3	(0.28,0.32]	chr6	263598	181	INTRON	INTRON	CDYL	ENSG00000153046.18	ENST00000328908.9:ENST00000491864.1:ENST00000440139.5:ENST00000483019.1:ENST00000397588.8:ENST00000472453.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	62	2	3.00395	3.0406950000000004	3.07744	0.0101329	0.00604536	0.0850389	0.0700813
chr16	21855791	21855887	6461796	0	-	0.322917	(0.32,0.35]	chr16	623451	10	INTRON	INTRON	NPIPB4	ENSG00000185864.18	ENST00000415645.6:ENST00000682606.1:ENST00000542133.5:ENST00000539318.5:ENST00000341400.11:ENST00000518761.8:ENST00000520808.6:ENST00000536041.5:ENST00000529969.1:ENST00000540103.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	57	2	2.89743	3.0406750000000002	3.18392	0.0127608	0.00379806	0.0926667	0.0562562
chr3	38371068	38371167	1399727	0	+	0.494949	(0.476,0.515]	chr3	146824	5	INTRON	INTRON	XYLB	ENSG00000093217.11	ENST00000207870.8:ENST00000650590.1:ENST00000424034.5:ENST00000649234.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	170	2	2.85682	3.040645	3.22447	1.52104e-4	2.7642e-5	0.0106137	0.00431042
chr5	32302465	32302565	2598295	0	-	0.53	(0.515,0.57]	chr5	246856	56	INTRON	INTRON	MTMR12	ENSG00000150712.11	ENST00000280285.9:ENST00000382142.8:ENST00000264934.5:ENST00000505419.5:ENST00000513622.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	76	2	2.84387	3.04061	3.23735	0.0018149	2.1866e-4	0.0384415	0.0129728
chr18	9923603	9923703	6873437	0	+	0.36	(0.35,0.378]	chr18	680866	74	INTRON	INTRON	VAPA	ENSG00000101558.14	ENST00000400000.7:ENST00000577901.5:ENST00000340541.4:ENST00000585042.5:ENST00000578314.1:ENST00000584796.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	188	2	2.57113	3.0405300000000004	3.50993	1.22305e-4	9.29372e-5	0.00993581	0.00807206
chr10	18634080	18634180	4570540	0	-	0.31	(0.28,0.32]	chr10	421519	174	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7:ENST00000606425.2	protein_coding	protein_coding	protein_coding	protein_coding	2	35	2	1.83771	3.0404549999999997	4.2432	0.0591725	0.0479043	0.189982	0.153019
chr10	21732498	21732598	4406420	0	+	0.31	(0.28,0.32]	chr10	406574	2	SS3_PROX	SS3_PROX:INTRON	MLLT10	ENSG00000078403.17	ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000651298.1:ENST00000377059.7:ENST00000651382.1:ENST00000438473.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	35	2	1.83771	3.0404549999999997	4.2432	0.0591725	0.0479043	0.189982	0.153019
chr17	32176910	32177009	6597172	0	+	0.30303	(0.28,0.32]	chr17	641762	3	INTRON	INTRON	RHOT1	ENSG00000126858.19	ENST00000333942.10:ENST00000358365.7:ENST00000583994.5:ENST00000545287.7:ENST00000354266.7:ENST00000581031.5:ENST00000581094.5:ENST00000578205.5:ENST00000580976.1:ENST00000394692.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	35	2	1.83771	3.0404549999999997	4.2432	0.0591725	0.0479043	0.189982	0.153019
chr5	157817747	157817847	2758241	0	-	0.32	(0.28,0.32]	chr5	260303	2	SS3_PROX	SS3_PROX:INTRON	CLINT1	ENSG00000113282.14	ENST00000523094.5:ENST00000411809.7:ENST00000530742.5:ENST00000523908.5	protein_coding	protein_coding	protein_coding	protein_coding	2	35	2	1.83771	3.0404549999999997	4.2432	0.0591725	0.0479043	0.189982	0.153019
chr1	55099470	55099570	464684	0	-	0.48	(0.476,0.515]	chr1	56044	3	SS5_PROX	SS5_PROX:INTRON	USP24	ENSG00000162402.14	ENST00000294383.7	protein_coding	protein_coding	protein_coding	protein_coding	4	43	2	1.63962	3.04045	4.44128	0.0346854	0.0151924	0.148144	0.0994339
chr1	212435625	212435724	308889	0	+	0.515152	(0.476,0.515]	chr1	35661	7	INTRON	INTRON	NENF	ENSG00000117691.10	ENST00000366988.5:ENST00000479589.5:ENST00000473900.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	35	2	2.10874	3.040375	3.97201	0.030904	0.0285608	0.143385	0.12666
chr6	34886247	34886343	3086320	0	-	0.520833	(0.515,0.57]	chr6	288722	11	INTRON	INTRON	TAF11	ENSG00000064995.19	ENST00000361288.9:ENST00000650109.1:ENST00000693593.1:ENST00000420584.3:ENST00000689560.1:ENST00000685682.1:ENST00000686190.1:ENST00000687970.1:ENST00000688059.1:ENST00000690161.1:ENST00000693481.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	29	2	1.79136	3.040285	4.28921	0.0638444	0.00990051	0.177811	0.0877296
chr8	42275292	42275392	3742979	0	+	0.52	(0.515,0.57]	chr8	348064	27	INTRON	INTRON	IKBKB	ENSG00000104365.16	ENST00000520810.6:ENST00000629753.2:ENST00000517890.5:ENST00000520835.7:ENST00000523105.5:ENST00000519735.5:ENST00000519733.5:ENST00000518679.5:ENST00000517917.5:ENST00000342222.6:ENST00000520201.5:ENST00000518647.5:ENST00000517388.5:ENST00000521661.5:ENST00000520655.5:ENST00000517812.5:ENST00000522147.4:ENST00000523517.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	29	2	1.79136	3.040285	4.28921	0.0638444	0.00990051	0.177811	0.0877296
chr8	98571275	98571375	3997602	0	-	0.52	(0.515,0.57]	chr8	366036	175	INTRON	INTRON	STK3	ENSG00000104375.17	ENST00000617590.1:ENST00000419617.7:ENST00000523601.5:ENST00000518582.5:ENST00000523159.5:ENST00000518165.5:ENST00000518627.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	29	2	1.79136	3.040285	4.28921	0.0638444	0.00990051	0.177811	0.0877296
chr7	129035356	129035456	3636385	0	-	0.48	(0.476,0.515]	chr7	338142	168	INTRON	INTRON	TNPO3	ENSG00000064419.14	ENST00000627585.2:ENST00000265388.10:ENST00000471234.5:ENST00000482320.5:ENST00000471166.1	protein_coding	protein_coding	protein_coding	protein_coding	7	134	2	2.64043	3.040185	3.43994	2.41299e-4	1.29236e-4	0.0136685	0.0103343
chr21	34870766	34870866	7447092	0	-	0.52	(0.515,0.57]	chr21	759849	108	INTRON	INTRON	RUNX1	ENSG00000159216.19	ENST00000300305.7:ENST00000675419.1:ENST00000437180.5:ENST00000344691.8:ENST00000482318.5:ENST00000399240.5:ENST00000358356.9:ENST00000399237.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	106	2	2.7402	3.04014	3.34008	3.10265e-4	1.23135e-4	0.0162055	0.00949625
chr7	75481620	75481719	3558886	0	-	0.424242	(0.408,0.44]	chr7	331555	61	INTRON	INTRON	POM121C:ENSG00000242073	ENSG00000272391.6:ENSG00000242073.2	ENST00000615331.5:ENST00000398379.2:ENST00000415277.2	protein_coding	protein_coding	protein_coding:transcribed_unprocessed_pseudogene	protein_coding:transcribed_unprocessed_pseudogene	6	101	2	2.23161	3.0401	3.84859	0.00206564	2.66911e-4	0.04217	0.0149989
chr21	33574905	33575000	7397771	0	+	0.347368	(0.32,0.35]	chr21	753583	11	INTRON	INTRON	SON	ENSG00000159140.22	ENST00000356577.10:ENST00000381692.6:ENST00000695559.1:ENST00000455528.5:ENST00000436227.5:ENST00000457208.5:ENST00000467616.5:ENST00000473102.5:ENST00000484294.5:ENST00000470533.5:ENST00000478183.5:ENST00000465834.5:ENST00000477419.5:ENST00000491794.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	28	2	2.30673	3.040085	3.77344	0.0596635	0.0584434	0.189982	0.167723
chr3	136935989	136936089	1513180	0	+	0.35	(0.32,0.35]	chr3	158212	50	INTRON	INTRON	NCK1	ENSG00000158092.7	ENST00000481752.6:ENST00000288986.6:ENST00000491539.5:ENST00000485096.5:ENST00000488930.5:ENST00000496489.5:ENST00000469404.1:ENST00000467911.1	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	2.30673	3.040085	3.77344	0.0596635	0.0584434	0.189982	0.167723
chr4	67654590	67654690	2153987	0	-	0.32	(0.28,0.32]	chr4	212133	50	INTRON	INTRON	UBA6	ENSG00000033178.13	ENST00000322244.10	protein_coding	protein_coding	protein_coding	protein_coding	3	83	2	2.74418	3.04007	3.33596	0.00342993	0.00328589	0.0527031	0.0517761
chr16	89453691	89453791	6543233	0	-	0.46	(0.44,0.476]	chr16	634281	220	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	66	2	2.9044	3.04006	3.17572	0.00427037	0.00132926	0.0573912	0.0335085
chr19	29947537	29947636	7047606	0	+	0.353535	(0.35,0.378]	chr19	702657	45	INTRON	INTRON	URI1	ENSG00000105176.18	ENST00000360605.8:ENST00000570564.5:ENST00000574233.5:ENST00000392271.6:ENST00000574110.5:ENST00000574666.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	72	2	2.95105	3.04005	3.12905	0.00566312	0.00115843	0.0653997	0.0313803
chr7	151360724	151360819	3449269	0	+	0.484211	(0.476,0.515]	chr7	322367	6	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	NUB1	ENSG00000013374.17	ENST00000413040.7:ENST00000468404.5:ENST00000568733.6:ENST00000470229.6:ENST00000470316.5:ENST00000480907.5:ENST00000497987.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	88	2	2.9698	3.040005	3.11021	0.00124841	5.02606e-4	0.0323336	0.020217099999999998
chr6	57154843	57154942	2878726	0	+	0.30303	(0.28,0.32]	chr6	273319	4	INTRON	INTRON	ZNF451	ENSG00000112200.17	ENST00000357489.7:ENST00000370706.9:ENST00000504603.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	268	2	2.91335	3.0399950000000002	3.16664	2.46614e-4	1.75184e-5	0.0145064	0.00318733
chr9	127790023	127790119	4202124	0	+	0.3125	(0.28,0.32]	chr9	383811	6	UTR3	UTR3:EXON_MRNA	CDK9	ENSG00000136807.14	ENST00000373264.5	protein_coding	protein_coding	protein_coding	protein_coding	4	121	2	2.67153	3.0399450000000003	3.40836	0.00436402	3.04565e-4	0.060356	0.0161236
chr6	57924116	57924216	3115055	0	-	0.48	(0.476,0.515]	chr6	291805	3	SS5_PROX	SS5_PROX:INTRON	GUSBP4	ENSG00000239650.4	ENST00000423899.1	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	2	50	2	2.63168	3.03976	3.44784	0.0237106	0.00113238	0.118716	0.0308465
chr6	161066299	161066399	3025241	0	+	0.38	(0.378,0.408]	chr6	282325	160	INTRON	INTRON	MAP3K4	ENSG00000085511.20	ENST00000366919.6:ENST00000392142.9:ENST00000542952.5:ENST00000366920.6:ENST00000348824.11:ENST00000544041.5:ENST00000490904.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	69	2	2.51733	3.0397049999999997	3.56208	0.00808319	6.94246e-4	0.0766625	0.0240761
chr5	139279217	139279306	2499227	0	+	0.52809	(0.515,0.57]	chr5	238882	2	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MATR3:SNHG4	ENSG00000280987.4:ENSG00000281398.4	ENST00000509990.5:ENST00000506147.5:ENST00000512107.5:ENST00000648842.1:ENST00000448190.6:ENST00000361059.7:ENST00000506188.5:ENST00000507692.5:ENST00000394800.6:ENST00000502929.5:ENST00000504203.5:ENST00000514694.5:ENST00000513259.5:ENST00000507197.5:ENST00000509644.5:ENST00000505016.2:ENST00000505522.6:ENST00000514110.5:ENST00000502394.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	14	238	2	2.82315	3.039395	3.25564	1.11204e-5	3.11021e-6	0.00263978	0.00114063
chr1	17435647	17435746	384946	0	-	0.565657	(0.515,0.57]	chr1	45493	61	INTRON	INTRON	RCC2	ENSG00000179051.14	ENST00000375436.9:ENST00000375433.3	protein_coding	protein_coding	protein_coding	protein_coding	3	57	2	2.87626	3.0393299999999996	3.2024	0.00322022	0.00136224	0.0507087	0.0339121
chr4	110157581	110157681	2227324	0	-	0.52	(0.515,0.57]	chr4	218024	516	INTRON	INTRON	ELOVL6	ENSG00000170522.10	ENST00000394607.7:ENST00000302274.8:ENST00000514184.5:ENST00000506625.5:ENST00000506461.1:ENST00000503885.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	57	2	2.87626	3.0393299999999996	3.2024	0.00322022	0.00136224	0.0507087	0.0339121
chr22	39953732	39953831	7516635	0	+	0.484848	(0.476,0.515]	chr22	768030	54	INTRON	INTRON	GRAP2	ENSG00000100351.17	ENST00000344138.9:ENST00000420971.5:ENST00000478445.1:ENST00000407075.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	90	2	2.4029	3.03917	3.67544	0.0016811	5.51624e-4	0.0381232	0.0216014
chr19	16657660	16657760	7150766	0	-	0.59	(0.57,1]	chr19	722466	19	INTRON	INTRON	SMIM7	ENSG00000214046.9	ENST00000465250.6:ENST00000481671.6:ENST00000594662.5:ENST00000597781.5:ENST00000598278.5:ENST00000593409.5:ENST00000487803.5:ENST00000627144.2:ENST00000487416.7:ENST00000593404.5:ENST00000597711.5:ENST00000599310.5:ENST00000397349.6:ENST00000602194.5:ENST00000600740.5:ENST00000461488.5:ENST00000463051.5:ENST00000358726.6:ENST00000594507.5:ENST00000461364.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	36	2	2.81057	3.039085	3.2676	0.00176203	0.00169295	0.0381936	0.0376652
chr17	29403625	29403725	6585768	0	+	0.34	(0.32,0.35]	chr17	640375	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	ENSG00000266111:TAOK1	ENSG00000266111.2:ENSG00000160551.12	ENST00000584958.2:ENST00000261716.8:ENST00000583121.5:ENST00000587277.1:ENST00000536202.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	2	57	2	2.79707	3.03907	3.28107	0.0170923	0.00262488	0.104099	0.0470772
chr1	35928645	35928744	71119	0	+	0.30303	(0.28,0.32]	chr1	9124	91	UTR3	UTR3:EXON_MRNA	AGO1	ENSG00000092847.13	ENST00000373204.6:ENST00000674426.1	protein_coding	protein_coding	protein_coding	protein_coding	3	85	2	2.68602	3.0390300000000003	3.39204	0.0055712	0.00188405	0.0649112	0.0402736
chr1	176157570	176157670	591212	0	-	0.38	(0.378,0.408]	chr1	70951	81	INTRON	INTRON	COP1	ENSG00000143207.21	ENST00000367669.8:ENST00000367667.5:ENST00000367666.5:ENST00000649803.1:ENST00000308769.12:ENST00000498306.5:ENST00000491600.5:ENST00000474194.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	31	2	1.97143	3.03902	4.10661	0.0399023	0.0398704	0.161534	0.143072
chr2	17705255	17705352	1073597	0	-	0.391753	(0.378,0.408]	chr2	114551	16	INTRON	INTRON	SMC6	ENSG00000163029.16	ENST00000351948.8:ENST00000448223.7:ENST00000402989.5:ENST00000446852.5	protein_coding	protein_coding	protein_coding	protein_coding	2	31	2	1.97143	3.03902	4.10661	0.0399023	0.0398704	0.161534	0.143072
chr2	181018023	181018123	936346	0	+	0.4	(0.378,0.408]	chr2	102627	281	INTRON	INTRON	UBE2E3	ENSG00000170035.16	ENST00000602303.5:ENST00000602959.5:ENST00000602479.5:ENST00000392415.6:ENST00000602291.5:ENST00000410062.9:ENST00000602499.5:ENST00000602710.5:ENST00000602762.5:ENST00000602888.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	31	2	1.97143	3.03902	4.10661	0.0399023	0.0398704	0.161534	0.143072
chr9	34243404	34243503	4111920	0	+	0.40404	(0.378,0.408]	chr9	374742	9	INTRON	INTRON	UBAP1	ENSG00000165006.14	ENST00000625521.2:ENST00000379186.8:ENST00000297661.9:ENST00000626262.2:ENST00000359544.2	protein_coding	protein_coding	protein_coding	protein_coding	2	31	2	1.97143	3.03902	4.10661	0.0399023	0.0398704	0.161534	0.143072
chr22	19074408	19074508	7551533	0	-	0.42	(0.408,0.44]	chr22	771897	58	INTRON	INTRON	DGCR2	ENSG00000070413.20	ENST00000537045.5:ENST00000545799.5:ENST00000263196.12:ENST00000389262.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	101	2	2.25874	3.03901	3.81928	0.00181031	3.06208e-4	0.0393822	0.0161362
chr22	18095441	18095540	7476137	0	+	0.575758	(0.57,1]	chr22	762231	75	UTR3	UTR3:EXON_MRNA	PEX26	ENSG00000215193.14	ENST00000329627.11:ENST00000399744.8	protein_coding	protein_coding	protein_coding	protein_coding	3	36	2	2.6547	3.038965	3.42323	0.00346848	8.58388e-4	0.0539802	0.0267428
chr1	39848782	39848875	427917	0	-	0.430108	(0.408,0.44]	chr1	51994	3	INTRON	INTRON	TRIT1	ENSG00000043514.17	ENST00000316891.10:ENST00000648678.1:ENST00000537440.5:ENST00000372818.5:ENST00000462797.5:ENST00000441669.6:ENST00000495175.6:ENST00000491865.5:ENST00000541099.5:ENST00000492612.6:ENST00000489945.5:ENST00000486825.6:ENST00000469476.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	122	2	2.68751	3.0389600000000003	3.39041	3.87147e-4	1.80518e-4	0.0177751	0.0121877
chr13	32593488	32593588	5465378	0	+	0.55	(0.515,0.57]	chr13	523717	65	INTRON	INTRON	PDS5B	ENSG00000083642.19	ENST00000315596.15:ENST00000482955.5:ENST00000498550.5:ENST00000450460.5:ENST00000493653.1:ENST00000466078.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	109	2	2.84736	3.03894	3.23052	4.72534e-4	4.03858e-5	0.0201458	0.00515782
chr1	227294905	227295005	651485	0	-	0.23	[0,0.28]	chr1	77110	298	INTRON	INTRON	CDC42BPA	ENSG00000143776.20	ENST00000366766.8:ENST00000366769.7:ENST00000334218.9:ENST00000366767.7:ENST00000366764.8:ENST00000478573.6:ENST00000682551.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	70	2	2.9385	3.03888	3.13926	0.0142776	0.00563224	0.0963703	0.0678837
chr22	21590661	21590761	7481934	0	+	0.41	(0.408,0.44]	chr22	763232	219	INTRON	INTRON	UBE2L3	ENSG00000185651.16	ENST00000458578.6:ENST00000545681.2:ENST00000696046.1:ENST00000342192.9:ENST00000496722.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	52	2	2.43988	3.038865	3.63785	0.0398236	4.70012e-4	0.143072	0.0196294
chr2	107743145	107743245	1205981	0	-	0.33	(0.32,0.35]	chr2	128532	255	INTRON	INTRON	LINC01885:ENSG00000286769	ENSG00000237880.2:ENSG00000286769.1	ENST00000654481.1:ENST00000669817.1	lncRNA	lncRNA	lncRNA	lncRNA	9	218	2	2.77452	3.03885	3.30318	2.80927e-4	1.39114e-5	0.015435	0.00278603
chr8	102377709	102377808	4012406	0	-	0.282828	(0.28,0.32]	chr8	367237	157	INTRON	INTRON	UBR5	ENSG00000104517.13	ENST00000520539.6:ENST00000220959.8:ENST00000521922.5	protein_coding	protein_coding	protein_coding	protein_coding	4	117	2	2.4387	3.0388450000000002	3.63899	0.0126802	4.64392e-5	0.0926667	0.00555027
chr5	21489428	21489527	2326028	0	+	0.343434	(0.32,0.35]	chr5	225028	149	INTRON	INTRON	GUSBP1	ENSG00000183666.18	ENST00000508260.5:ENST00000449061.3:ENST00000685731.1:ENST00000688956.1:ENST00000692922.1:ENST00000686144.1:ENST00000607545.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	8	190	2	2.94414	3.03883	3.13352	2.25801e-4	5.3545e-5	0.0138078	0.00598676
chr1	233623551	233623651	338628	0	+	0.41	(0.408,0.44]	chr1	39406	87	INTRON	INTRON	KCNK1	ENSG00000135750.15	ENST00000366621.8	protein_coding	protein_coding	protein_coding	protein_coding	3	68	2	2.95296	3.03877	3.12458	0.00929354	4.61817e-4	0.0817766	0.0194611
chr8	140532915	140533015	4075512	0	-	0.51	(0.476,0.515]	chr8	370179	3	SS3_PROX	SS3_PROX:INTRON	AGO2	ENSG00000123908.12	ENST00000220592.10:ENST00000519980.5:ENST00000523609.5:ENST00000520412.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	49	2	2.8863	3.038745	3.19119	0.0111679	0.00325748	0.0877435	0.0524329
chrX	13352098	13352198	7622477	0	+	0.49	(0.476,0.515]	chrX	780353	104	INTRON	INTRON	LINC01203	ENSG00000226985.7	ENST00000669963.1:ENST00000661545.1:ENST00000659526.1:ENST00000656410.1:ENST00000661104.1:ENST00000456091.2:ENST00000655502.1:ENST00000671651.1:ENST00000656979.1:ENST00000656271.1:ENST00000661629.1:ENST00000661464.1:ENST00000668192.1:ENST00000665887.1:ENST00000659191.1:ENST00000667868.1:ENST00000653729.1:ENST00000656111.1	lncRNA	lncRNA	lncRNA	lncRNA	2	49	2	2.8863	3.038745	3.19119	0.0111679	0.00325748	0.0877435	0.0524329
chr1	100094700	100094799	515471	0	-	0.515152	(0.476,0.515]	chr1	60434	61	INTRON	INTRON	SASS6	ENSG00000156876.10	ENST00000462159.1:ENST00000287482.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	49	2	2.9435	3.0386949999999997	3.13389	0.00929849	0.00405473	0.0817766	0.0578376
chr5	139326584	139326684	2499727	0	+	0.48	(0.476,0.515]	chr5	238977	3	SS5_PROX	SS5_PROX:INTRON	MATR3	ENSG00000280987.4:ENSG00000015479.20	ENST00000509990.5:ENST00000361059.7:ENST00000394800.6:ENST00000502929.5:ENST00000504203.5:ENST00000502499.5:ENST00000510056.5:ENST00000394805.8:ENST00000503811.5:ENST00000618441.5:ENST00000505625.5:ENST00000502422.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	49	2	2.9435	3.0386949999999997	3.13389	0.00929849	0.00405473	0.0817766	0.0578376
chr5	127003236	127003335	2714285	0	-	0.535354	(0.515,0.57]	chr5	255278	565	INTRON	INTRON	MARCHF3	ENSG00000173926.6	ENST00000308660.6:ENST00000502289.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	84	2	2.59745	3.03852	3.47959	8.38022e-4	6.62645e-4	0.0263691	0.0234815
chr9	123228954	123229054	4340084	0	-	0.3	(0.28,0.32]	chr9	398957	152	INTRON	INTRON	STRBP	ENSG00000165209.19	ENST00000348403.10:ENST00000360998.3:ENST00000407982.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	83	2	2.70831	3.03843	3.36855	0.00378444	0.00305882	0.0562562	0.0494118
chr20	5588754	5588854	7312119	0	-	0.47	(0.44,0.476]	chr20	744600	21	INTRON	INTRON	GPCPD1	ENSG00000125772.14	ENST00000379019.7:ENST00000481690.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	14	290	2	2.56132	3.038385	3.51545	2.11405e-4	1.40607e-7	0.0132223	1.69668e-4
chr7	101249815	101249914	3588200	0	-	0.575758	(0.57,1]	chr7	334901	49	INTRON	INTRON	FIS1	ENSG00000214253.9	ENST00000474120.5:ENST00000473527.5:ENST00000435848.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	39	2	2.91889	3.03832	3.15775	0.00719009	2.72513e-4	0.0756118	0.0151392
chr8	67077277	67077375	3776753	0	+	0.387755	(0.378,0.408]	chr8	350250	3	INTRON	INTRON	CSPP1	ENSG00000104218.16	ENST00000676113.1:ENST00000675306.2:ENST00000678156.1:ENST00000262210.11:ENST00000678017.1:ENST00000675869.1:ENST00000521919.6:ENST00000678542.1:ENST00000677619.1:ENST00000676605.1:ENST00000676471.1:ENST00000677256.1:ENST00000676847.1:ENST00000677009.1:ENST00000675820.1:ENST00000676317.1:ENST00000677592.1:ENST00000676573.1:ENST00000678318.1:ENST00000677473.1:ENST00000674993.1:ENST00000678553.1:ENST00000678927.1:ENST00000678204.1:ENST00000679226.1:ENST00000676882.1:ENST00000675955.1:ENST00000678728.1:ENST00000677430.1:ENST00000677455.1:ENST00000677071.1:ENST00000678616.1:ENST00000678362.1:ENST00000679112.1:ENST00000678645.1:ENST00000676567.1:ENST00000677845.1:ENST00000519701.5:ENST00000519163.6:ENST00000676858.1:ENST00000678747.1:ENST00000678821.1:ENST00000678744.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	129	2	2.1245	3.038255	3.95201	0.00724232	3.88273e-6	0.0729826	0.00130504
chr7	96275995	96276095	3575794	0	-	0.39	(0.378,0.408]	chr7	333065	407	INTRON	INTRON	SLC25A13	ENSG00000004864.14	ENST00000265631.10:ENST00000416240.6:ENST00000472162.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	48	2	1.41307	3.038225	4.66338	0.0510067	0.0103469	0.176593	0.0850389
chr10	99400581	99400681	4677179	0	-	0.56	(0.515,0.57]	chr10	431352	25	INTRON	INTRON	GOT1	ENSG00000120053.12	ENST00000370508.7:ENST00000489349.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	76	2	2.804	3.0382049999999996	3.27241	0.00215855	1.80226e-4	0.0417866	0.0116696
chr1	39865667	39865767	428094	0	-	0.39	(0.378,0.408]	chr1	52026	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	TRIT1	ENSG00000043514.17	ENST00000316891.10:ENST00000648678.1:ENST00000537440.5:ENST00000372818.5:ENST00000462797.5:ENST00000441669.6:ENST00000495175.6:ENST00000491865.5:ENST00000541099.5:ENST00000492612.6:ENST00000489945.5:ENST00000486825.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	92	2	2.76893	3.03805	3.30717	0.00316735	1.8574e-4	0.0503085	0.0118964
chr10	128116836	128116936	4715606	0	-	0.39	(0.378,0.408]	chr10	435165	3	SS3_PROX	SS3_PROX:INTRON	MKI67	ENSG00000148773.14	ENST00000368654.8:ENST00000368653.7:ENST00000478293.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	93	2	2.63057	3.03804	3.44551	0.0053733	8.68398e-5	0.0642754	0.00783027
chr4	32035897	32035997	1941807	0	+	0.36	(0.35,0.378]	chr4	194727	377	INTRON	INTRON	LINC02506	ENSG00000251129.3	ENST00000662669.1:ENST00000665582.2:ENST00000667252.2:ENST00000660373.2:ENST00000684849.1:ENST00000513211.2:ENST00000659613.1:ENST00000657576.1:ENST00000686730.1:ENST00000685407.1:ENST00000685455.1:ENST00000655951.1	lncRNA	lncRNA	lncRNA	lncRNA	2	54	2	2.99173	3.03802	3.08431	0.00713365	0.0065853	0.0756118	0.0701901
chr11	28096163	28096258	4938327	0	-	0.242105	[0,0.28]	chr11	462517	10	INTRON	INTRON	KIF18A	ENSG00000121621.7	ENST00000263181.7:ENST00000533466.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	178	2	2.91866	3.037925	3.15719	0.00122973	2.31603e-4	0.0321419	0.013445
chr16	29536878	29536978	6470944	0	-	0.38	(0.378,0.408]	chr16	625184	2	SS5_PROX	SS5_PROX:INTRON	ENSG00000288632:SMG1P2	ENSG00000288632.1:ENSG00000205534.6	ENST00000675579.1:ENST00000566127.1	lncRNA	lncRNA	lncRNA:transcribed_unprocessed_pseudogene	lncRNA:transcribed_unprocessed_pseudogene	2	52	2	2.92665	3.037785	3.14892	0.0086017	0.00499984	0.083729	0.0617433
chr17	47056106	47056206	6788195	0	-	0.39	(0.378,0.408]	chr17	669478	81	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	ENSG00000262879	ENSG00000262879.6	ENST00000668245.1:ENST00000670688.1:ENST00000655083.1:ENST00000656035.1:ENST00000663416.1:ENST00000575930.5:ENST00000663847.1:ENST00000571901.5:ENST00000660267.1:ENST00000570314.2:ENST00000660600.1:ENST00000669500.1:ENST00000660448.1:ENST00000662706.1:ENST00000655133.1:ENST00000571143.2:ENST00000663210.1:ENST00000653193.1:ENST00000668766.1:ENST00000661492.1:ENST00000575173.2:ENST00000666536.1:ENST00000653065.1:ENST00000658121.1:ENST00000573341.6:ENST00000667718.1	lncRNA	lncRNA	lncRNA	lncRNA	2	52	2	2.92665	3.037785	3.14892	0.0086017	0.00499984	0.083729	0.0617433
chr3	47826946	47827046	1420214	0	+	0.4	(0.378,0.408]	chr3	149222	2	SS3_PROX	SS3_PROX:INTRON	DHX30	ENSG00000132153.15	ENST00000395745.6:ENST00000445061.6:ENST00000441384.5:ENST00000348968.8:ENST00000446256.6:ENST00000619982.4:ENST00000457607.1:ENST00000471082.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	52	2	2.92665	3.037785	3.14892	0.0086017	0.00499984	0.083729	0.0617433
chr2	31982393	31982493	1090835	0	-	0.53	(0.515,0.57]	chr2	116913	192	INTRON	INTRON	MEMO1:DPY30	ENSG00000162959.14:ENSG00000162961.14	ENST00000295065.9:ENST00000446765.5:ENST00000404530.6:ENST00000490459.5:ENST00000426310.6:ENST00000413686.1:ENST00000407893.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	68	2	2.53705	3.037745	3.53844	0.00186194	7.92613e-4	0.039946	0.0259663
chr3	138832197	138832297	1831475	0	-	0.37	(0.35,0.378]	chr3	184062	353	INTRON	INTRON	PIK3CB	ENSG00000051382.9	ENST00000674063.1:ENST00000477593.5:ENST00000462898.5:ENST00000483968.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	99	2	2.52395	3.03765	3.55135	0.00824736	5.25585e-5	0.0773378	0.00591845
chr4	26431596	26431694	1937813	0	+	0.367347	(0.35,0.378]	chr4	194470	7	UTR3	UTR3:EXON_MRNA	RBPJ	ENSG00000168214.22	ENST00000355476.8:ENST00000342320.8	protein_coding	protein_coding	protein_coding	protein_coding	9	137	2	1.81436	3.0374499999999998	4.26054	0.0054616	4.43007e-5	0.0670244	0.00571886
chr1	227296705	227296805	651503	0	-	0.29	(0.28,0.32]	chr1	77110	316	INTRON	INTRON	CDC42BPA	ENSG00000143776.20	ENST00000366766.8:ENST00000366769.7:ENST00000334218.9:ENST00000366767.7:ENST00000366764.8:ENST00000478573.6:ENST00000682551.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	11	279	2	2.86486	3.037255	3.20965	8.02043e-5	3.59525e-5	0.00804467	0.00481059
chr15	63670896	63670996	6199226	0	-	0.52	(0.515,0.57]	chr15	591222	8	INTRON	INTRON	HERC1	ENSG00000103657.14	ENST00000443617.7	protein_coding	protein_coding	protein_coding	protein_coding	3	59	2	2.88267	3.0372250000000003	3.19178	0.00289534	0.00152842	0.0494641	0.0353936
chr7	128089188	128089288	3406808	0	+	0.53	(0.515,0.57]	chr7	318232	3	SS3_PROX	SS3_PROX:INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000489417.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	59	2	2.88267	3.0372250000000003	3.19178	0.00289534	0.00152842	0.0494641	0.0353936
chr1	223808539	223808638	642997	0	-	0.272727	[0,0.28]	chr1	75932	12	INTRON	INTRON	TP53BP2	ENSG00000143514.17	ENST00000343537.12:ENST00000391878.6:ENST00000494100.1:ENST00000496282.5:ENST00000473135.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	132	2	2.57374	3.0370299999999997	3.50032	0.00245166	0.00121496	0.0446188	0.0322637
chr10	71816297	71816392	4642473	0	-	0.347368	(0.32,0.35]	chr10	427106	1	UTR3	UTR3:EXON_MRNA	PSAP	ENSG00000197746.15	ENST00000394936.8	protein_coding	protein_coding	protein_coding	protein_coding	3	79	2	2.89743	3.037025	3.1766200000000002	0.0127608	4.35341e-4	0.0926667	0.0187673
chr6	44247495	44247595	2872832	0	+	0.73	(0.57,1]	chr6	272576	3	SS5_PROX	SS5_PROX:INTRON	HSP90AB1	ENSG00000096384.20	ENST00000620073.4:ENST00000353801.7:ENST00000371646.10	protein_coding	protein_coding	protein_coding	protein_coding	41	442	2	2.81313	3.03698	3.26083	2.72075e-7	3.31782e-10	2.57429e-4	2.43276e-6
chr12	71611390	71611487	5363025	0	-	0.360825	(0.35,0.378]	chr12	511883	4	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ZFC3H1	ENSG00000133858.17	ENST00000378743.9:ENST00000552994.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	86	2	2.43108	3.0368000000000004	3.64252	0.00345501	8.02255e-4	0.0539802	0.0262199
chr16	21441414	21441513	6460729	0	-	0.323232	(0.32,0.35]	chr16	623226	8	INTRON	INTRON	NPIPB3	ENSG00000169246.16	ENST00000545358.5:ENST00000543368.1:ENST00000544154.1	protein_coding	retained_intron	protein_coding	retained_intron:processed_transcript	3	77	2	2.38582	3.036785	3.68775	0.0138529	4.66127e-4	0.0953077	0.0195589
chr8	28190583	28190679	3723217	0	+	0.59375	(0.57,1]	chr8	346123	10	UTR3	UTR3:EXON_MRNA	ELP3	ENSG00000134014.17	ENST00000521015.5:ENST00000380353.8:ENST00000537665.2:ENST00000256398.13	protein_coding	protein_coding	protein_coding	protein_coding	4	43	2	2.37366	3.03676	3.69986	0.00373392	1.9698e-4	0.0535844	0.0122531
chrX	73852623	73852723	7838050	0	-	0.49	(0.476,0.515]	chrX	799611	153	EXON_LNCRNA	EXON_LNCRNA	XIST	ENSG00000229807.13	ENST00000429829.6	lncRNA	lncRNA	lncRNA	lncRNA	23	403	2	2.42116	3.03659	3.65202	2.70494e-5	3.10315e-7	0.00409966	3.04894e-4
chr1	90994762	90994862	502255	0	-	0.46	(0.44,0.476]	chr1	59504	120	INTRON	INTRON	ZNF644	ENSG00000122482.22	ENST00000370440.5:ENST00000337393.10:ENST00000347275.9:ENST00000361321.5:ENST00000467231.5:ENST00000498303.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	90	2	2.35576	3.036555	3.71735	0.00208591	4.72844e-4	0.0424672	0.0201458
chr10	119585379	119585478	4705914	0	-	0.484848	(0.476,0.515]	chr10	434228	24	INTRON	INTRON	TIAL1	ENSG00000151923.18	ENST00000369093.6:ENST00000436547.7:ENST00000489822.5:ENST00000497671.5:ENST00000470781.5:ENST00000412524.5:ENST00000369086.1:ENST00000462373.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	224	2	2.85072	3.0365	3.22228	1.09541e-4	2.73213e-6	0.00942341	0.00105808
chr9	111374338	111374438	4314150	0	-	0.34	(0.32,0.35]	chr9	396633	3	SS3_PROX	SS3_PROX:INTRON	ECPAS	ENSG00000136813.15	ENST00000684092.1:ENST00000338205.9:ENST00000259335.8	protein_coding	protein_coding	protein_coding	protein_coding	3	40	2	1.61669	3.03649	4.45629	0.0578816	0.0246089	0.188651	0.12011
chr9	33259314	33259408	4244156	0	-	0.43617	(0.408,0.44]	chr9	390154	4	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	BAG1	ENSG00000107262.26	ENST00000634734.3:ENST00000467389.6:ENST00000379701.5:ENST00000379704.7:ENST00000379707.7:ENST00000473464.2:ENST00000473781.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	67	2	2.6117	3.03637	3.46104	0.00555224	0.00105552	0.0648867	0.0299229
chr3	19962549	19962649	1376190	0	+	0.4	(0.378,0.408]	chr3	145051	93	INTRON	INTRON	RAB5A	ENSG00000144566.11	ENST00000273047.9:ENST00000412966.5:ENST00000446547.5:ENST00000422242.1:ENST00000469122.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	51	2	2.84663	3.0363100000000003	3.22599	0.0133954	0.00288652	0.0946278	0.0494641
chr8	41779598	41779698	3938880	0	-	0.4	(0.378,0.408]	chr8	361123	211	INTRON	INTRON	ANK1	ENSG00000029534.21	ENST00000347528.8:ENST00000265709.13:ENST00000289734.13	protein_coding	protein_coding	protein_coding	protein_coding	2	51	2	2.84663	3.0363100000000003	3.22599	0.0133954	0.00288652	0.0946278	0.0494641
chr1	184952403	184952503	602832	0	-	0.44	(0.408,0.44]	chr1	71774	527	INTRON	INTRON	NIBAN1	ENSG00000135842.17	ENST00000367511.4	protein_coding	protein_coding	protein_coding	protein_coding	2	54	2	2.27698	3.0361599999999997	3.79534	0.0583528	2.17043e-4	0.167723	0.0129235
chr9	137609384	137609482	4223400	0	+	0.571429	(0.57,1]	chr9	388125	32	INTRON	INTRON	ARRDC1	ENSG00000197070.14	ENST00000483563.5:ENST00000371421.9:ENST00000431925.6:ENST00000461627.1:ENST00000419386.1:ENST00000466367.5:ENST00000495220.5:ENST00000471125.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	43	2	2.64903	3.03613	3.42323	9.85026e-4	8.58388e-4	0.0288488	0.0267428
chr7	6731955	6732055	3274100	0	+	0.29	(0.28,0.32]	chr7	304504	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	PMS2CL	ENSG00000187953.10	ENST00000486256.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	3	83	2	2.91124	3.036125	3.16101	0.0061861	0.00165124	0.0677395	0.0375241
chr1	171500986	171501086	253369	0	+	0.53	(0.515,0.57]	chr1	30096	149	INTRON	INTRON	PRRC2C	ENSG00000117523.18	ENST00000647382.2:ENST00000367742.7:ENST00000476522.5:ENST00000338920.8:ENST00000467601.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	162	2	2.70214	3.0360449999999997	3.36995	3.86081e-5	2.41467e-5	0.00501161	0.00403538
chr7	73157839	73157939	3331037	0	+	0.46	(0.44,0.476]	chr7	309730	21	INTRON	INTRON	GTF2IP4	ENSG00000233369.7	ENST00000544802.5	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	4	80	2	2.07016	3.03604	4.00192	0.0151815	7.32704e-5	0.0994339	0.00714177
chr1	35188190	35188268	420552	0	-	0.371795	(0.35,0.378]	chr1	50669	1	SS3_PROX	SS3_PROX:INTRON	SFPQ	ENSG00000116560.12	ENST00000470472.5:ENST00000696553.1:ENST00000357214.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	102	2	2.72093	3.036025	3.35112	0.00314173	2.67918e-4	0.0514466	0.0149998
chr11	46830246	46830346	4948606	0	-	0.55	(0.515,0.57]	chr11	463857	35	INTRON	INTRON	CKAP5	ENSG00000175216.15	ENST00000529230.6:ENST00000312055.9:ENST00000525248.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	68	2	2.57697	3.035965	3.49496	0.00153959	9.61701e-4	0.0362709	0.0282401
chr2	61404209	61404309	1129885	0	-	0.3	(0.28,0.32]	chr2	121485	86	INTRON	INTRON	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000453133.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	62	2	2.67975	3.035895	3.39204	0.0252505	0.00188405	0.12011	0.0402736
chr7	30601890	30601985	3301504	0	+	0.484211	(0.476,0.515]	chr7	306537	8	EXON_MRNA	EXON_MRNA:INTRON	GARS1	ENSG00000106105.15	ENST00000675051.1:ENST00000470392.2:ENST00000674643.1:ENST00000675529.1:ENST00000674807.1:ENST00000675810.1:ENST00000676088.1:ENST00000674815.1:ENST00000676403.1:ENST00000485784.2:ENST00000676210.1:ENST00000478124.6:ENST00000454308.6:ENST00000389266.8:ENST00000675693.1:ENST00000676259.1:ENST00000675651.1:ENST00000674616.1:ENST00000674737.1:ENST00000675859.1:ENST00000676140.1:ENST00000674969.1:ENST00000676164.1:ENST00000675886.1:ENST00000444666.6:ENST00000675587.1:ENST00000674851.1:ENST00000675863.1:ENST00000675025.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	52	2	2.40608	3.0358650000000003	3.66565	0.0425709	4.18031e-4	0.148082	0.0182827
chr5	6607684	6607784	2566513	0	-	0.45	(0.44,0.476]	chr5	245906	3	SS3_PROX	SS3_PROX:INTRON	NSUN2	ENSG00000037474.15	ENST00000264670.11:ENST00000504374.5:ENST00000505892.5:ENST00000506139.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	103	2	1.82106	3.03581	4.25056	0.0124107	3.33797e-5	0.0973643	0.00487221
chr7	155779113	155779212	3453267	0	+	0.424242	(0.408,0.44]	chr7	322755	41	UTR3	UTR3:EXON_MRNA	RBM33	ENSG00000184863.11	ENST00000401878.8:ENST00000341148.7	protein_coding	protein_coding	protein_coding	protein_coding	7	137	2	2.36243	3.03575	3.70907	0.00107664	3.28941e-5	0.0300133	0.00483774
chr10	22655029	22655129	4579904	0	-	0.34	(0.32,0.35]	chr10	422028	84	INTRON	INTRON	PIP4K2A	ENSG00000150867.14	ENST00000376573.9:ENST00000545335.5:ENST00000605011.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	57	2	2.74415	3.0357250000000002	3.3273	0.0198267	0.00218894	0.109608	0.0435144
chr3	168085151	168085251	1854832	0	-	0.35	(0.32,0.35]	chr3	186419	364	INTRON	INTRON	GOLIM4	ENSG00000173905.9	ENST00000470487.6:ENST00000309027.4	protein_coding	protein_coding	protein_coding	protein_coding	2	57	2	2.74415	3.0357250000000002	3.3273	0.0198267	0.00218894	0.109608	0.0435144
chr11	9978740	9978840	4911558	0	-	0.58	(0.57,1]	chr11	460374	62	INTRON	INTRON	SBF2	ENSG00000133812.18	ENST00000692716.1:ENST00000689940.1:ENST00000256190.13:ENST00000688344.1:ENST00000689128.1:ENST00000675281.2:ENST00000676387.2:ENST00000676324.2:ENST00000689258.1:ENST00000689597.1:ENST00000530741.2:ENST00000689674.1:ENST00000690003.1:ENST00000693181.1:ENST00000533770.6:ENST00000420722.3:ENST00000688417.1:ENST00000687210.1:ENST00000526353.2:ENST00000690234.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	40	2	2.66438	3.03572	3.40706	0.0171563	5.92509e-5	0.104099	0.00631599
chr17	66348049	66348149	6662752	0	+	0.47	(0.44,0.476]	chr17	650324	81	INTRON	INTRON	PRKCA	ENSG00000154229.12	ENST00000413366.8:ENST00000578063.5:ENST00000284384.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	34	2	1.96602	3.0357100000000004	4.1054	0.0426807	0.0220205	0.148082	0.123836
chr19	3202972	3203066	6999020	0	+	0.468085	(0.44,0.476]	chr19	694112	10	INTRON	INTRON	NCLN	ENSG00000125912.11	ENST00000590671.5:ENST00000246117.9:ENST00000588428.5:ENST00000587740.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	34	2	1.96602	3.0357100000000004	4.1054	0.0426807	0.0220205	0.148082	0.123836
chr19	9665161	9665260	7133405	0	-	0.464646	(0.44,0.476]	chr19	718911	39	INTRON	INTRON	ZNF562	ENSG00000171466.10	ENST00000453372.7:ENST00000293648.8:ENST00000590155.5:ENST00000585688.5:ENST00000587392.5:ENST00000588653.5:ENST00000589542.1:ENST00000585350.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	34	2	1.96602	3.0357100000000004	4.1054	0.0426807	0.0220205	0.148082	0.123836
chr10	74000371	74000470	4454523	0	+	0.484848	(0.476,0.515]	chr10	411385	16	INTRON	INTRON	VCL	ENSG00000035403.18	ENST00000623461.3:ENST00000372755.7:ENST00000624354.3:ENST00000211998.10:ENST00000478896.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	135	2	2.45353	3.0357000000000003	3.61787	9.04659e-4	3.07966e-5	0.0278365	0.004431
chr2	180990046	180990145	936066	0	+	0.343434	(0.32,0.35]	chr2	102627	1	INTRON	INTRON	UBE2E3	ENSG00000170035.16	ENST00000602303.5:ENST00000602959.5:ENST00000602479.5:ENST00000392415.6:ENST00000602291.5:ENST00000410062.9:ENST00000602499.5:ENST00000602710.5:ENST00000602762.5:ENST00000602888.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	58	2	2.57263	3.03566	3.49869	0.0312297	0.00108004	0.13151	0.0300133
chr9	125113941	125114041	4351684	0	-	0.3	(0.28,0.32]	chr9	399530	475	INTRON	INTRON	SCAI	ENSG00000173611.18	ENST00000336505.11:ENST00000373549.8:ENST00000477186.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	29	2	2.18975	3.0356	3.88145	0.0776042	0.0561985	0.196285	0.18407
chr3	43707353	43707453	1410344	0	+	0.41	(0.408,0.44]	chr3	147938	3	SS3_PROX	SS3_PROX:INTRON	ABHD5	ENSG00000011198.10	ENST00000643520.1:ENST00000458276.7:ENST00000649763.1:ENST00000643140.1:ENST00000643500.1:ENST00000644371.2:ENST00000013894.3:ENST00000646378.1:ENST00000643477.1:ENST00000646799.1:ENST00000454293.2:ENST00000642351.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	89	2	2.98079	3.03558	3.09037	0.00124935	5.47766e-4	0.0323434	0.0212924
chr2	175081165	175081265	1271451	0	-	0.36	(0.35,0.378]	chr2	134391	4	SS3_PROX	SS3_PROX:INTRON	ATF2	ENSG00000115966.18	ENST00000345739.9:ENST00000426833.7:ENST00000264110.7:ENST00000409437.5:ENST00000409635.5:ENST00000435004.6:ENST00000428760.5:ENST00000392544.5:ENST00000417080.5:ENST00000456655.5:ENST00000421438.5:ENST00000429579.5:ENST00000415955.5:ENST00000409499.5:ENST00000478905.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	129	2	2.12374	3.0355600000000003	3.94738	0.00164707	2.06843e-4	0.0374954	0.0131276
chr2	38593836	38593935	1099687	0	-	0.50505	(0.476,0.515]	chr2	117957	18	INTRON	INTRON	HNRNPLL	ENSG00000143889.16	ENST00000449105.8:ENST00000409636.5:ENST00000358367.8:ENST00000608859.5:ENST00000378915.7:ENST00000409328.5:ENST00000410076.5:ENST00000425682.1:ENST00000498516.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	93	2	2.36512	3.0353250000000003	3.70553	0.00246559	3.44823e-4	0.0446195	0.0165103
chrX	135540739	135540838	7725723	0	+	0.59596	(0.57,1]	chrX	790370	191	INTRON	INTRON	INTS6L	ENSG00000165359.16	ENST00000370752.4:ENST00000481908.5:ENST00000639893.2:ENST00000493637.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	60	2	2.32017	3.035285	3.7504	0.00488159	5.81468e-6	0.0640618	0.00179882
chr22	37866018	37866117	7511861	0	+	0.363636	(0.35,0.378]	chr22	767189	23	INTRON	INTRON	EIF3L	ENSG00000100129.18	ENST00000412331.6:ENST00000624234.3:ENST00000439997.5:ENST00000381683.10:ENST00000476955.5:ENST00000652021.1:ENST00000436452.6:ENST00000477256.5:ENST00000406934.5:ENST00000464790.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	38	2	1.58862	3.03523	4.48184	0.0615516	0.0191702	0.193423	0.108861
chr18	12998920	12999020	6876641	0	+	0.36	(0.35,0.378]	chr18	681337	1	SS3_PROX	SS3_PROX:INTRON	CEP192	ENSG00000101639.19	ENST00000325971.12:ENST00000506447.5:ENST00000589596.5:ENST00000507064.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	109	2	2.14824	3.03521	3.92218	0.00327182	2.32637e-4	0.052643	0.013966
chr11	46487197	46487297	4946174	0	-	0.48	(0.476,0.515]	chr11	463449	432	INTRON	INTRON	AMBRA1	ENSG00000110497.15	ENST00000683756.1:ENST00000534300.5:ENST00000533727.5:ENST00000314845.7:ENST00000458649.6:ENST00000528950.1:ENST00000529553.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	52	2	2.65268	3.03498	3.41728	0.0201975	0.00165726	0.121243	0.0369207
chr9	88405507	88405607	4152217	0	+	0.49	(0.476,0.515]	chr9	378721	157	INTRON	INTRON	SPIN1	ENSG00000106723.17	ENST00000485804.5:ENST00000469017.6:ENST00000375859.4:ENST00000462844.5:ENST00000485565.6:ENST00000483785.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	52	2	2.65268	3.03498	3.41728	0.0201975	0.00165726	0.121243	0.0369207
chr2	148054876	148054973	887090	0	+	0.402062	(0.378,0.408]	chr2	98626	6	EXON_LNCRNA	EXON_LNCRNA:SS3_PROX:SS5_PROX:INTRON	MBD5	ENSG00000204406.14	ENST00000407073.5:ENST00000488372.5:ENST00000496158.5:ENST00000642680.2:ENST00000638130.1:ENST00000637308.1:ENST00000473478.5:ENST00000635796.1:ENST00000637997.1:ENST00000470063.5:ENST00000638043.2:ENST00000638090.1:ENST00000637445.1:ENST00000637242.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	37	2	1.65821	3.0349500000000003	4.41169	0.0506302	0.0199606	0.17547	0.109608
chr9	36580646	36580745	4116547	0	+	0.393939	(0.378,0.408]	chr9	375237	71	INTRON	INTRON	MELK	ENSG00000165304.8	ENST00000543751.5:ENST00000536860.5:ENST00000541717.4:ENST00000536329.5:ENST00000627766.2:ENST00000298048.7:ENST00000536987.5:ENST00000545008.5:ENST00000495529.5:ENST00000489766.5:ENST00000625974.2:ENST00000487398.3:ENST00000626154.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	37	2	1.65821	3.0349500000000003	4.41169	0.0506302	0.0199606	0.17547	0.109608
chr16	85649447	85649546	6416334	0	+	0.626263	(0.57,1]	chr16	615495	3	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000635906.1:ENST00000405402.6:ENST00000411612.5:ENST00000253458.12:ENST00000393243.5	protein_coding	protein_coding	protein_coding	protein_coding	7	71	2	2.35463	3.0349449999999996	3.71526	8.71651e-4	7.50551e-6	0.0268326	0.00205959
chr4	2361210	2361310	2099156	0	-	0.43	(0.408,0.44]	chr4	207730	68	INTRON	INTRON	ZFYVE28	ENSG00000159733.14	ENST00000290974.7:ENST00000511071.5:ENST00000515312.5:ENST00000515169.5:ENST00000509171.5:ENST00000503000.1:ENST00000508184.5:ENST00000504743.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	54	2	2.58179	3.03486	3.48793	0.024638	0.00130904	0.131869	0.0331539
chr10	68762690	68762790	4442703	0	+	0.17	[0,0.28]	chr10	409684	11	INTRON	INTRON	CCAR1	ENSG00000060339.14	ENST00000630771.2:ENST00000543719.5:ENST00000541012.5:ENST00000265872.11:ENST00000539539.5:ENST00000543229.5:ENST00000536012.5:ENST00000543225.5:ENST00000540210.5:ENST00000479143.2:ENST00000543706.1:ENST00000539250.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	96	2	2.20642	3.03484	3.86326	0.0280845	3.23716e-4	0.125065	0.0159645
chr8	144441758	144441851	4086250	0	-	0.537634	(0.515,0.57]	chr8	372064	8	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	TONSL	ENSG00000160949.18	ENST00000409379.8:ENST00000497613.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	57	2	2.48902	3.034685	3.58035	0.00760558	5.21239e-4	0.0749571	0.0204523
chr19	12542933	12543033	7139872	0	-	0.54	(0.515,0.57]	chr19	720335	10	INTRON	INTRON	ZNF564	ENSG00000249709.8	ENST00000339282.12:ENST00000427105.1:ENST00000596193.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	57	2	2.53845	3.03465	3.53085	0.00632226	6.59951e-4	0.0687526	0.0232396
chr5	54179925	54180025	2619611	0	-	0.55	(0.515,0.57]	chr5	248860	76	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2:ENST00000505630.5:ENST00000505383.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	57	2	2.53845	3.03465	3.53085	0.00632226	6.59951e-4	0.0687526	0.0232396
chr12	31304068	31304164	5302634	0	-	0.40625	(0.378,0.408]	chr12	504665	7	EXON_LNCRNA	EXON_LNCRNA:INTRON	SINHCAF	ENSG00000139146.14	ENST00000337682.9:ENST00000539409.5:ENST00000454658.6:ENST00000542983.1:ENST00000539004.5:ENST00000543615.1:ENST00000536836.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	160	2	2.92764	3.03464	3.14164	3.01906e-4	5.65861e-5	0.0155054	0.00655354
chr1	236807125	236807223	342614	0	+	0.438776	(0.408,0.44]	chr1	39822	5	INTRON	INTRON	MTR	ENSG00000116984.15	ENST00000680454.1:ENST00000366577.10:ENST00000674797.2:ENST00000652435.1:ENST00000679569.1:ENST00000650888.1:ENST00000463959.1:ENST00000535889.6:ENST00000651455.1:ENST00000681102.1:ENST00000679842.1:ENST00000681177.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	177	2	2.73456	3.0346349999999997	3.33471	7.1837e-5	5.01821e-5	0.00705244	0.00612726
chr7	32889283	32889383	3515599	0	-	0.48	(0.476,0.515]	chr7	327782	90	INTRON	INTRON	KBTBD2	ENSG00000170852.12	ENST00000304056.9:ENST00000485611.5:ENST00000452926.1:ENST00000453627.1:ENST00000423022.1:ENST00000424468.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	219	2	2.47068	3.034555	3.59843	1.73004e-4	4.99714e-6	0.0120833	0.00152038
chr1	3780795	3780892	363869	0	-	0.484536	(0.476,0.515]	chr1	42596	24	UTR3	UTR3:EXON_MRNA	LRRC47	ENSG00000130764.10	ENST00000378251.3	protein_coding	protein_coding	protein_coding	protein_coding	4	80	2	2.44441	3.034525	3.62464	0.0036718	5.079e-4	0.0535094	0.0202328
chr1	173482875	173482974	255570	0	+	0.414141	(0.408,0.44]	chr1	30499	10	INTRON	INTRON	PRDX6	ENSG00000117592.9	ENST00000340385.6:ENST00000470017.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	129	2	3.01715	3.034265	3.05138	2.31493e-4	1.77739e-4	0.0139549	0.0116289
chr4	126565908	126566008	2236368	0	-	0.34	(0.32,0.35]	chr4	219023	1004	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	8	67	2	1.1708	3.03424	4.89768	0.0641583	0.00793135	0.199375	0.076155
chr22	19073012	19073112	7551519	0	-	0.48	(0.476,0.515]	chr22	771897	44	INTRON	INTRON	DGCR2	ENSG00000070413.20	ENST00000537045.5:ENST00000545799.5:ENST00000263196.12:ENST00000389262.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	91	2	2.76855	3.03407	3.29959	0.00244302	2.65033e-4	0.0456956	0.0149989
chr2	61444193	61444293	1130288	0	-	0.38	(0.378,0.408]	chr2	121499	230	INTRON	INTRON	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000453133.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	53	2	2.46373	3.0340100000000003	3.60429	0.0382831	5.71664e-4	0.141795	0.0217398
chr7	127993525	127993623	3405839	0	+	0.561224	(0.515,0.57]	chr7	318184	21	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000486037.1:ENST00000484767.5:ENST00000470723.5:ENST00000467238.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	77	2	2.87626	3.0339349999999996	3.19161	0.00136224	3.49295e-4	0.0339121	0.017404
chr3	138194026	138194126	1514019	0	+	0.53	(0.515,0.57]	chr3	158295	51	INTRON	INTRON	ARMC8	ENSG00000114098.18	ENST00000538260.5:ENST00000481646.5:ENST00000469044.6:ENST00000491704.5:ENST00000461600.5:ENST00000466749.5:ENST00000358441.6:ENST00000489213.5:ENST00000461822.5:ENST00000485396.5:ENST00000471453.5:ENST00000470821.5:ENST00000471709.5:ENST00000463485.5:ENST00000468560.1	protein_coding	protein_coding	protein_coding	protein_coding	3	35	2	1.56681	3.033915	4.50102	0.064862	0.00510768	0.179394	0.0646039
chr9	137666352	137666452	4223950	0	+	0.41	(0.408,0.44]	chr9	388177	3	SS5_PROX	SS5_PROX:INTRON	EHMT1	ENSG00000181090.21	ENST00000462484.5:ENST00000371394.6:ENST00000630754.2:ENST00000460843.6:ENST00000626216.2:ENST00000629335.2:ENST00000637335.1:ENST00000636376.1:ENST00000637655.1:ENST00000636027.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	80	2	2.7371	3.0338849999999997	3.33067	0.0024459	7.83328e-4	0.0445752	0.0257505
chr16	88914784	88914883	6540673	0	-	0.585859	(0.57,1]	chr16	634096	124	INTRON	INTRON	CBFA2T3	ENSG00000129993.15	ENST00000268679.9:ENST00000327483.9:ENST00000569464.5:ENST00000569443.5:ENST00000563640.1:ENST00000564416.1:ENST00000570046.1	protein_coding	protein_coding	protein_coding	protein_coding	2	28	2	2.66438	3.033855	3.40333	0.0171563	9.20604e-4	0.104099	0.0278392
chr17	82933940	82934038	6696087	0	+	0.642857	(0.57,1]	chr17	655098	7	INTRON	INTRON	TBCD	ENSG00000141556.22	ENST00000682479.1:ENST00000682722.1:ENST00000684464.1:ENST00000684544.1:ENST00000681983.1:ENST00000684361.1:ENST00000683184.1:ENST00000683282.1:ENST00000684408.1:ENST00000355528.9:ENST00000683444.1:ENST00000684776.1:ENST00000683041.1:ENST00000684760.1:ENST00000684349.1:ENST00000682213.1:ENST00000539345.6:ENST00000684000.1:ENST00000684188.1:ENST00000684429.1:ENST00000682610.1:ENST00000683821.1:ENST00000682654.1:ENST00000683584.1:ENST00000682099.1:ENST00000684559.1:ENST00000683839.1:ENST00000682315.1:ENST00000576677.6:ENST00000574886.2:ENST00000577051.1:ENST00000575132.5:ENST00000576603.5:ENST00000573364.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	28	2	2.66438	3.033855	3.40333	0.0171563	9.20604e-4	0.104099	0.0278392
chr22	42571302	42571402	7527015	0	+	0.6	(0.57,1]	chr22	769559	2	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	SERHL2	ENSG00000183569.18	ENST00000477564.5:ENST00000340239.8:ENST00000534080.5:ENST00000416156.6:ENST00000527167.5:ENST00000327678.10:ENST00000407614.8:ENST00000335879.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	28	2	2.66438	3.033855	3.40333	0.0171563	9.20604e-4	0.104099	0.0278392
chr6	15362017	15362117	2824107	0	+	0.49	(0.476,0.515]	chr6	265192	471	INTRON	INTRON	JARID2	ENSG00000008083.14	ENST00000341776.7:ENST00000397311.4	protein_coding	protein_coding	protein_coding	protein_coding	2	51	2	2.48527	3.03385	3.58243	0.03496	6.18479e-4	0.13747500000000001	0.0223951
chr11	47549102	47549201	4950363	0	-	0.373737	(0.35,0.378]	chr11	464246	245	INTRON	INTRON	CELF1	ENSG00000149187.19	ENST00000310513.10:ENST00000687097.1:ENST00000531165.5:ENST00000530151.5:ENST00000525841.5:ENST00000526419.1	protein_coding	protein_coding	protein_coding	protein_coding	3	47	2	1.87726	3.03374	4.19022	0.0297629	0.0209891	0.12908	0.122348
chr9	111424819	111424917	4314687	0	-	0.428571	(0.408,0.44]	chr9	396780	12	INTRON	INTRON	ECPAS	ENSG00000136813.15	ENST00000684092.1:ENST00000338205.9:ENST00000259335.8:ENST00000602447.5	protein_coding	protein_coding	protein_coding	protein_coding	4	80	2	2.30838	3.0336	3.75882	0.00547703	4.04678e-4	0.0671198	0.0185763
chr1	207050223	207050314	624941	0	-	0.340659	(0.32,0.35]	chr1	74437	1	SS5_PROX	SS5_PROX:INTRON	YOD1	ENSG00000180667.11	ENST00000367084.1:ENST00000315927.9	protein_coding	protein_coding	protein_coding	protein_coding	8	137	2	2.0259	3.033535	4.04117	0.00288146	1.61151e-4	0.0494641	0.0116265
chr1	213002733	213002833	634961	0	-	0.47	(0.44,0.476]	chr1	75009	6	INTRON	INTRON	ANGEL2	ENSG00000174606.14	ENST00000366962.8:ENST00000360506.6:ENST00000535388.2	protein_coding	protein_coding	protein_coding	protein_coding	7	109	2	2.1123	3.03352	3.95474	0.0023263	1.54083e-4	0.0442989	0.0113252
chr11	58620071	58620170	4794164	0	+	0.343434	(0.32,0.35]	chr11	443881	25	UTR3	UTR3:EXON_MRNA	ZFP91	ENSG00000186660.15	ENST00000316059.7	protein_coding	protein_coding	protein_coding	protein_coding	4	94	2	2.41492	3.033395	3.65187	0.00513727	5.49434e-4	0.062965	0.0213049
chr11	483070	483169	4719235	0	+	0.454545	(0.44,0.476]	chr11	436026	26	INTRON	INTRON	PTDSS2	ENSG00000174915.12	ENST00000532614.5:ENST00000308020.6:ENST00000531520.5:ENST00000526878.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	91	2	2.00165	3.0333750000000004	4.0651	0.0109867	5.16491e-5	0.0873897	0.00585477
chr5	12725487	12725586	2320094	0	+	0.252525	[0,0.28]	chr5	224798	138	INTRON	INTRON	LINC01194	ENSG00000248131.6	ENST00000513051.6:ENST00000505196.1	lncRNA	lncRNA	lncRNA	lncRNA	3	55	2	1.59412	3.0333300000000003	4.47254	0.0729426	0.020991	0.189278	0.122348
chr19	1361232	1361332	6994765	0	+	0.58	(0.57,1]	chr19	693059	2	SS5_PROX	SS5_PROX:INTRON	PWWP3A	ENSG00000160953.17	ENST00000591337.7:ENST00000591433.6:ENST00000591806.6:ENST00000652273.1:ENST00000415183.7:ENST00000587460.6:ENST00000627377.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	28	2	2.79889	3.033245	3.2676	0.0110274	0.00176203	0.0927187	0.0376652
chr7	73554761	73554860	3555297	0	-	0.424242	(0.408,0.44]	chr7	330858	7	INTRON	INTRON	BCL7B	ENSG00000106635.8	ENST00000223368.7:ENST00000411832.5:ENST00000482231.5:ENST00000454871.5:ENST00000463858.5:ENST00000448175.5:ENST00000455335.2:ENST00000464288.5:ENST00000416906.2:ENST00000493592.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	66	2	2.86612	3.03323	3.20034	0.00398025	0.00157924	0.0549214	0.0366789
chrX	130108024	130108124	7887567	0	-	0.53	(0.515,0.57]	chrX	803067	261	INTRON	INTRON	ELF4	ENSG00000102034.18	ENST00000308167.10:ENST00000335997.11:ENST00000434609.1	protein_coding	protein_coding	protein_coding	protein_coding	7	124	2	2.76267	3.0331900000000003	3.30371	2.74246e-4	2.52567e-5	0.0151711	0.00394111
chr5	139343706	139343806	2499801	0	+	0.48	(0.476,0.515]	chr5	238988	3	SS5_PROX	SS5_PROX:INTRON	PAIP2	ENSG00000120727.13	ENST00000507755.5:ENST00000265192.9:ENST00000510409.1:ENST00000511381.1:ENST00000511706.5:ENST00000507415.1:ENST00000394795.6:ENST00000510080.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	51	2	2.73205	3.033105	3.33416	0.0159328	0.00230489	0.109464	0.0428247
chr10	11605275	11605374	4556006	0	-	0.373737	(0.35,0.378]	chr10	420468	72	INTRON	INTRON	USP6NL	ENSG00000148429.15	ENST00000609104.6:ENST00000606752.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	39	2	1.76773	3.0330600000000003	4.29839	0.0373863	0.0294717	0.155878	0.128055
chr12	9442238	9442338	5265108	0	-	0.36	(0.35,0.378]	chr12	501928	36	INTRON	INTRON	DDX12P	ENSG00000214826.5	ENST00000432996.2	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	3	39	2	1.76773	3.0330600000000003	4.29839	0.0373863	0.0294717	0.155878	0.128055
chr6	131615532	131615623	3221540	0	-	0.351648	(0.35,0.378]	chr6	299428	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MED23	ENSG00000112282.18	ENST00000354577.8:ENST00000368068.8:ENST00000368060.7:ENST00000368058.5:ENST00000368053.8:ENST00000539158.1	protein_coding	protein_coding	protein_coding	protein_coding	3	39	2	1.76773	3.0330600000000003	4.29839	0.0373863	0.0294717	0.155878	0.128055
chr19	10673905	10674003	7013415	0	+	0.602041	(0.57,1]	chr19	696780	20	INTRON	INTRON	ILF3	ENSG00000129351.17	ENST00000449870.5:ENST00000587928.5:ENST00000407004.7:ENST00000589998.5:ENST00000589600.5:ENST00000590009.5:ENST00000587505.5:ENST00000589052.5:ENST00000250241.12:ENST00000590261.5:ENST00000588657.5:ENST00000592763.5:ENST00000587840.5:ENST00000589416.5:ENST00000585835.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	86	2	2.95494	3.033055	3.11117	4.7566e-5	1.50448e-5	0.00595108	0.00292449
chr19	5611032	5611119	7124238	0	-	0.344828	(0.32,0.35]	chr19	717016	5	EXON_MRNA	EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SAFB2	ENSG00000130254.12	ENST00000252542.9:ENST00000591123.5:ENST00000592599.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	255	2	2.72769	3.03303	3.33837	8.02858e-5	2.94662e-5	0.00804467	0.00431591
chr4	902144	902243	2093984	0	-	0.575758	(0.57,1]	chr4	206956	36	INTRON	INTRON	GAK	ENSG00000178950.18	ENST00000314167.9:ENST00000511163.5:ENST00000505819.5:ENST00000507580.5:ENST00000502656.5:ENST00000507991.1:ENST00000512325.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	47	2	2.86892	3.032995	3.19707	0.00125753	2.16062e-4	0.0323608	0.0129138
chr5	54089852	54089951	2618705	0	-	0.252525	[0,0.28]	chr5	248841	139	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	94	2	2.75887	3.03291	3.30695	0.00469836	0.00360252	0.0600108	0.0552588
chr15	68093985	68094085	6056353	0	+	0.31	(0.28,0.32]	chr15	576567	57	INTRON	INTRON	PIAS1	ENSG00000033800.14	ENST00000564915.5:ENST00000249636.11:ENST00000562190.1:ENST00000545237.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	83	2	2.94244	3.03288	3.12332	0.00698537	0.00144407	0.0718189	0.0348397
chr2	53956868	53956968	1120437	0	-	0.35	(0.32,0.35]	chr2	120102	72	INTRON	INTRON	PSME4	ENSG00000068878.15	ENST00000404125.6:ENST00000389993.7:ENST00000481518.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	60	2	2.37794	3.032845	3.68775	0.0498601	4.66127e-4	0.156383	0.0195589
chr3	155853293	155853379	1844338	0	-	0.453488	(0.44,0.476]	chr3	185568	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	SLC33A1	ENSG00000169359.16	ENST00000643144.2:ENST00000359479.7:ENST00000468581.2:ENST00000646424.1:ENST00000644094.1:ENST00000642438.1:ENST00000644855.1:ENST00000475842.5:ENST00000460729.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	13	225	2	2.47005	3.03281	3.59557	7.59013e-5	1.02871e-5	0.00731687	0.00250415
chr5	90704821	90704899	2421897	0	+	0.602564	(0.57,1]	chr5	232974	4	SS5_PROX	SS5_PROX:INTRON	ADGRV1	ENSG00000164199.18	ENST00000405460.9:ENST00000640403.1:ENST00000639473.1:ENST00000639431.1:ENST00000640779.1:ENST00000640012.1:ENST00000640374.1:ENST00000509621.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	36	2	2.88261	3.0328049999999998	3.183	0.00254356	0.00118949	0.0448135	0.031662
chr1	193159352	193159449	284994	0	+	0.402062	(0.378,0.408]	chr1	32812	27	EXON_LNCRNA	EXON_LNCRNA:INTRON	CDC73	ENSG00000134371.14	ENST00000649895.1:ENST00000643006.1:ENST00000367435.5:ENST00000650197.1:ENST00000648071.1:ENST00000635846.1:ENST00000649606.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	122	2	2.02825	3.032615	4.03698	0.00250079	1.18327e-4	0.0463797	0.00985867
chr4	3510184	3510283	2100294	0	-	0.434343	(0.408,0.44]	chr4	207916	67	UTR3	UTR3:EXON_MRNA	LRPAP1	ENSG00000163956.13	ENST00000650182.1	protein_coding	protein_coding	protein_coding	protein_coding	8	150	2	2.36276	3.0323200000000003	3.70188	9.38073e-4	1.79949e-5	0.0280776	0.00323573
chr3	6570479	6570578	1356947	0	+	0.363636	(0.35,0.378]	chr3	142512	118	INTRON	INTRON	ENSG00000189229	ENSG00000189229.12	ENST00000433639.1:ENST00000655754.1:ENST00000653839.1:ENST00000662846.1:ENST00000414438.2:ENST00000658468.1:ENST00000669512.1:ENST00000667028.1:ENST00000655541.1:ENST00000668643.1:ENST00000671568.1:ENST00000671036.1:ENST00000669798.1:ENST00000655753.1:ENST00000655856.1:ENST00000658398.1:ENST00000661518.1:ENST00000661279.1:ENST00000655495.1:ENST00000663041.1:ENST00000659827.1:ENST00000667716.1:ENST00000662508.1:ENST00000668416.1:ENST00000658133.1:ENST00000342990.4:ENST00000660054.1:ENST00000671370.1	lncRNA	lncRNA	lncRNA	lncRNA	19	408	2	2.61133	3.0322950000000004	3.45326	2.21091e-5	1.40047e-6	0.00367035	7.74096e-4
chr6	157000819	157000919	3009401	0	+	0.5	(0.476,0.515]	chr6	281130	153	INTRON	INTRON	ARID1B	ENSG00000049618.24	ENST00000346085.10:ENST00000636930.2:ENST00000647938.1:ENST00000350026.10:ENST00000674298.1:ENST00000674190.1:ENST00000414678.7:ENST00000319584.11:ENST00000452544.2:ENST00000637887.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	53	2	2.56868	3.0322750000000003	3.49587	0.0256676	0.00120011	0.133676	0.0315806
chr8	129464080	129464179	4059915	0	-	0.383838	(0.378,0.408]	chr8	369602	68	INTRON	INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1:ENST00000676273.1:ENST00000667643.1:ENST00000668791.1:ENST00000663716.1:ENST00000663572.1:ENST00000676148.1:ENST00000667962.1:ENST00000674877.1:ENST00000675316.1:ENST00000674656.1:ENST00000446592.7:ENST00000667341.1:ENST00000675186.1:ENST00000652971.1:ENST00000661447.1:ENST00000674863.1:ENST00000675498.1:ENST00000675527.1:ENST00000676108.1:ENST00000657647.1:ENST00000675589.1:ENST00000675913.1:ENST00000675109.1:ENST00000671632.1:ENST00000671311.1:ENST00000676099.1:ENST00000660652.1:ENST00000675522.1:ENST00000675183.1:ENST00000658861.1:ENST00000663991.1:ENST00000675044.1:ENST00000675435.1:ENST00000674639.1:ENST00000676069.1:ENST00000675532.1:ENST00000674762.1:ENST00000523151.6:ENST00000675948.1:ENST00000665364.1:ENST00000657251.1:ENST00000675166.1:ENST00000674883.1:ENST00000675867.1:ENST00000674580.1:ENST00000675393.1:ENST00000520048.1:ENST00000674906.1:ENST00000676030.1:ENST00000670588.1:ENST00000675072.1:ENST00000664936.1:ENST00000652914.1:ENST00000657069.1	lncRNA	lncRNA	lncRNA	lncRNA	7	156	2	2.64921	3.03219	3.41517	4.93004e-4	3.59461e-5	0.0200992	0.00508574
chr14	101884653	101884751	5819746	0	+	0.591837	(0.57,1]	chr14	551895	7	INTRON	INTRON	PPP2R5C	ENSG00000078304.20	ENST00000694906.1:ENST00000422945.6:ENST00000328724.9:ENST00000350249.7:ENST00000557621.5:ENST00000334743.9:ENST00000445439.7:ENST00000557095.5:ENST00000554137.5:ENST00000556218.5:ENST00000557534.1:ENST00000557716.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	56	2	2.60916	3.0321350000000002	3.45511	0.00119055	4.32887e-5	0.0315806	0.00532052
chr19	51879553	51879642	7204323	0	-	0.269663	[0,0.28]	chr19	731052	7	INTRON	INTRON	ZNF577	ENSG00000161551.15	ENST00000638827.1:ENST00000639703.1:ENST00000640955.1:ENST00000301399.12:ENST00000638348.2:ENST00000451628.9:ENST00000639636.2:ENST00000638325.1:ENST00000638814.1:ENST00000638538.1:ENST00000638423.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	70	2	3.01287	3.032005	3.05114	0.0115634	0.0075493	0.0889104	0.0773151
chr21	31687609	31687707	7437364	0	-	0.408163	(0.378,0.408]	chr21	758609	15	INTRON	INTRON	SCAF4	ENSG00000156304.15	ENST00000286835.12:ENST00000399804.5:ENST00000434667.3:ENST00000467731.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	46	2	1.84831	3.03197	4.21563	0.0315429	0.0172621	0.13151	0.111749
chrX	134771648	134771746	7893239	0	-	0.22449	[0,0.28]	chrX	803513	4	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PABIR2	ENSG00000156504.17	ENST00000343004.10:ENST00000370790.5:ENST00000298090.10:ENST00000478384.5:ENST00000486347.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	94	2	2.72768	3.031945	3.33621	0.00427056	0.00405445	0.0578376	0.0573912
chr6	41969579	41969679	3094522	0	-	0.56	(0.515,0.57]	chr6	289520	279	INTRON	INTRON	CCND3	ENSG00000112576.13	ENST00000511642.5:ENST00000616010.4:ENST00000372988.8:ENST00000415497.6:ENST00000510503.5:ENST00000511686.5:ENST00000513956.5:ENST00000508143.5:ENST00000505672.5:ENST00000511161.5:ENST00000505884.5:ENST00000514382.5:ENST00000502771.1:ENST00000514588.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	27	2	1.86007	3.0319399999999996	4.20381	0.0526611	0.0189208	0.178401	0.108861
chr5	180528574	180528674	2562205	0	+	0.36	(0.35,0.378]	chr5	245082	326	INTRON	INTRON	CNOT6	ENSG00000113300.13	ENST00000261951.9:ENST00000393356.7:ENST00000507016.1:ENST00000618123.4:ENST00000502447.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	32	2	1.9755	3.0318300000000002	4.08816	0.046021	0.0398617	0.161534	0.149888
chr7	150270152	150270252	3673116	0	-	0.48	(0.476,0.515]	chr7	340876	207	INTRON	INTRON	ACTR3C	ENSG00000106526.11	ENST00000478393.5:ENST00000683684.1:ENST00000252071.8	protein_coding	protein_coding	protein_coding	protein_coding	9	183	2	3.00144	3.03181	3.06218	1.00767e-4	1.78245e-5	0.00906101	0.0032168
chr1	214627054	214627153	313781	0	+	0.515152	(0.476,0.515]	chr1	36104	44	INTRON	INTRON	CENPF	ENSG00000117724.14	ENST00000366955.8	protein_coding	protein_coding	protein_coding	protein_coding	1	24	2	2.23335	3.031765	3.83018	0.0634557	0.0423385	0.177047	0.161744
chr10	77840190	77840289	4653917	0	-	0.494949	(0.476,0.515]	chr10	428726	39	INTRON	INTRON	DLG5	ENSG00000151208.17	ENST00000372391.7:ENST00000475613.6:ENST00000468332.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	24	2	2.23335	3.031765	3.83018	0.0634557	0.0423385	0.177047	0.161744
chr14	34868605	34868705	5868377	0	-	0.49	(0.476,0.515]	chr14	557415	59	INTRON	INTRON	BAZ1A	ENSG00000198604.11	ENST00000358716.8:ENST00000360310.6:ENST00000382422.6	protein_coding	protein_coding	protein_coding	protein_coding	1	24	2	2.23335	3.031765	3.83018	0.0634557	0.0423385	0.177047	0.161744
chr15	55372441	55372541	6181542	0	-	0.49	(0.476,0.515]	chr15	589228	5	EXON_MRNA	EXON_MRNA:SS3_PROX:PRIMIRNA:INTRON	CCPG1:MIR628	ENSG00000260916.8:ENSG00000283891.1	ENST00000442196.8:ENST00000310958.10:ENST00000425574.7:ENST00000568808.5:ENST00000568372.5:ENST00000569205.5:ENST00000563171.5:ENST00000570272.5:ENST00000385229.3	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:primary_miRNA	1	24	2	2.23335	3.031765	3.83018	0.0634557	0.0423385	0.177047	0.161744
chr15	57025170	57025270	6033178	0	+	0.48	(0.476,0.515]	chr15	574669	234	INTRON	INTRON	TCF12	ENSG00000140262.18	ENST00000438423.6:ENST00000267811.9:ENST00000333725.10:ENST00000560190.5:ENST00000559609.5:ENST00000558908.5:ENST00000557843.5:ENST00000557947.5:ENST00000561152.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	24	2	2.23335	3.031765	3.83018	0.0634557	0.0423385	0.177047	0.161744
chr16	21912460	21912558	6462401	0	-	0.489796	(0.476,0.515]	chr16	623591	7	INTRON	INTRON	SMG1P4	ENSG00000185710.9	ENST00000523028.5:ENST00000517529.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	1	24	2	2.23335	3.031765	3.83018	0.0634557	0.0423385	0.177047	0.161744
chr16	22270349	22270448	6321334	0	+	0.484848	(0.476,0.515]	chr16	605161	31	INTRON	INTRON	EEF2K	ENSG00000103319.12	ENST00000263026.10	protein_coding	protein_coding	protein_coding	protein_coding	1	24	2	2.23335	3.031765	3.83018	0.0634557	0.0423385	0.177047	0.161744
chr16	88775520	88775620	6540125	0	-	0.49	(0.476,0.515]	chr16	633998	257	INTRON	INTRON	PIEZO1	ENSG00000103335.22	ENST00000301015.14	protein_coding	protein_coding	protein_coding	protein_coding	1	24	2	2.23335	3.031765	3.83018	0.0634557	0.0423385	0.177047	0.161744
chr20	32212879	32212978	7254959	0	+	0.50505	(0.476,0.515]	chr20	736948	23	INTRON	INTRON	POFUT1	ENSG00000101346.14	ENST00000375749.8:ENST00000375730.3:ENST00000486717.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	24	2	2.23335	3.031765	3.83018	0.0634557	0.0423385	0.177047	0.161744
chr21	14508911	14509011	7427825	0	-	0.51	(0.476,0.515]	chr21	757738	78	INTRON	INTRON	SAMSN1	ENSG00000155307.19	ENST00000647101.1:ENST00000644288.1:ENST00000400564.5:ENST00000400566.6:ENST00000285670.7:ENST00000619120.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	24	2	2.23335	3.031765	3.83018	0.0634557	0.0423385	0.177047	0.161744
chr5	149852932	149853031	2518295	0	+	0.484848	(0.476,0.515]	chr5	240722	55	UTR3	UTR3:EXON_MRNA	PPARGC1B	ENSG00000155846.17	ENST00000309241.10	protein_coding	protein_coding	protein_coding	protein_coding	1	24	2	2.23335	3.031765	3.83018	0.0634557	0.0423385	0.177047	0.161744
chr7	92722933	92723032	3572122	0	-	0.494949	(0.476,0.515]	chr7	332798	213	INTRON	INTRON	CDK6	ENSG00000105810.10	ENST00000424848.3:ENST00000265734.8:ENST00000473078.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	24	2	2.23335	3.031765	3.83018	0.0634557	0.0423385	0.177047	0.161744
chr1	247312653	247312753	684266	0	-	0.48	(0.476,0.515]	chr1	80223	23	EXON_LNCRNA	EXON_LNCRNA:INTRON	ZNF496	ENSG00000162714.13	ENST00000294753.8:ENST00000462139.1:ENST00000682384.1:ENST00000461277.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	49	2	3.01197	3.031745	3.05152	0.0064848	0.00633162	0.0722266	0.0699952
chr2	108539083	108539183	845892	0	+	0.49	(0.476,0.515]	chr2	94661	41	INTRON	INTRON	LIMS1	ENSG00000169756.17	ENST00000695516.1:ENST00000544547.6:ENST00000695517.1	protein_coding	protein_coding	protein_coding	protein_coding	2	49	2	3.01197	3.031745	3.05152	0.0064848	0.00633162	0.0722266	0.0699952
chr19	2146565	2146664	7115502	0	-	0.414141	(0.408,0.44]	chr19	715270	75	INTRON	INTRON	AP3D1	ENSG00000065000.19	ENST00000643116.3:ENST00000345016.9:ENST00000643010.1:ENST00000591284.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	69	2	2.84077	3.031675	3.2225799999999998	0.0132196	2.79412e-4	0.0940535	0.0148832
chr1	32165206	32165305	64037	0	+	0.454545	(0.44,0.476]	chr1	8127	15	INTRON	INTRON	KPNA6	ENSG00000025800.14	ENST00000373625.8:ENST00000471599.5:ENST00000446515.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	88	2	2.78046	3.031635	3.28281	0.0028389	2.0352e-4	0.0473151	0.0124395
chr1	234474004	234474103	661384	0	-	0.474747	(0.44,0.476]	chr1	78262	8	INTRON	INTRON	TARBP1	ENSG00000059588.10	ENST00000040877.2	protein_coding	protein_coding	protein_coding	protein_coding	4	88	2	2.78046	3.031635	3.28281	0.0028389	2.0352e-4	0.0473151	0.0124395
chr1	46573054	46573151	443093	0	-	0.391753	(0.378,0.408]	chr1	53707	5	INTRON	INTRON	MKNK1	ENSG00000079277.22	ENST00000371945.10:ENST00000341183.9:ENST00000649800.1:ENST00000650026.1:ENST00000650508.1:ENST00000371946.9:ENST00000342571.7:ENST00000528077.6:ENST00000428112.7:ENST00000531355.6:ENST00000532783.5:ENST00000496619.6:ENST00000528237.5:ENST00000526513.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	68	2	2.86955	3.031615	3.19368	0.00426861	0.00159247	0.0573912	0.0367961
chr16	89436019	89436119	6543056	0	-	0.4	(0.378,0.408]	chr16	634281	43	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	68	2	2.86955	3.031615	3.19368	0.00426861	0.00159247	0.0573912	0.0367961
chr1	25244597	25244696	402319	0	-	0.272727	[0,0.28]	chr1	48355	2	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RSRP1	ENSG00000117616.18	ENST00000243189.12:ENST00000498238.1:ENST00000568254.5:ENST00000565733.5:ENST00000566395.5:ENST00000473314.6:ENST00000570063.5:ENST00000475766.2:ENST00000491378.1:ENST00000431849.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	13	385	2	2.27617	3.031605	3.78704	0.00186335	6.55719e-7	0.0390476	4.45364e-4
chr1	27908977	27909077	407738	0	-	0.46	(0.44,0.476]	chr1	49095	13	INTRON	INTRON	RPA2	ENSG00000117748.10	ENST00000373912.8:ENST00000373909.7:ENST00000313433.11:ENST00000444045.1	protein_coding	protein_coding	protein_coding	protein_coding	2	33	2	1.83899	3.03146	4.22393	0.0589734	0.0162322	0.167915	0.109464
chr5	134773095	134773195	2490522	0	+	0.46	(0.44,0.476]	chr5	237893	17	INTRON	INTRON	DDX46	ENSG00000145833.16	ENST00000628477.2:ENST00000452510.7:ENST00000507392.5:ENST00000354283.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	33	2	1.83899	3.03146	4.22393	0.0589734	0.0162322	0.167915	0.109464
chr1	43700275	43700373	86006	0	+	0.469388	(0.44,0.476]	chr1	11615	19	INTRON	INTRON	KDM4A	ENSG00000066135.13	ENST00000372396.4	protein_coding	protein_coding	protein_coding	protein_coding	3	36	2	1.62896	3.031365	4.43377	0.0546679	0.0162803	0.182674	0.101453
chr17	39348434	39348534	6766120	0	-	0.45	(0.44,0.476]	chr17	665497	48	INTRON	INTRON	FBXL20	ENSG00000108306.13	ENST00000264658.11:ENST00000583610.5:ENST00000394294.7:ENST00000577399.5:ENST00000647139.1	protein_coding	protein_coding	protein_coding	protein_coding	4	80	2	2.79598	3.0313350000000003	3.26669	0.00305435	5.82325e-4	0.0493883	0.0219289
chr21	46638381	46638480	7423701	0	+	0.363636	(0.35,0.378]	chr21	757179	10	INTRON	INTRON	PRMT2	ENSG00000160310.19	ENST00000451211.6:ENST00000458387.6:ENST00000397638.6:ENST00000291705.11:ENST00000397637.5:ENST00000334494.8:ENST00000355680.8:ENST00000397628.5:ENST00000440086.5	protein_coding	protein_coding	protein_coding	protein_coding	4	96	2	2.91317	3.03132	3.14947	0.00189062	4.50721e-4	0.0392053	0.0192381
chr2	235551232	235551332	1041909	0	+	0.45	(0.44,0.476]	chr2	111222	263	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1:ENST00000402604.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	66	2	2.55649	3.031165	3.50584	0.00670547	8.66138e-4	0.0707084	0.0266729
chr6	31510469	31510563	2842912	0	+	0.329787	(0.32,0.35]	chr6	267511	7	UTR3	UTR3:EXON_MRNA	MICB	ENSG00000204516.10	ENST00000538442.5:ENST00000399150.7:ENST00000252229.7	protein_coding	protein_coding	protein_coding	protein_coding	3	77	2	2.54408	3.03108	3.51808	0.00659077	0.00151238	0.0737338	0.0352794
chr7	12355343	12355432	3484928	0	-	0.539326	(0.515,0.57]	chr7	325868	5	INTRON	INTRON	VWDE	ENSG00000146530.15	ENST00000275358.8:ENST00000452576.6:ENST00000521169.5:ENST00000644150.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	16	241	2	2.30696	3.030965	3.75497	1.48294e-4	2.09997e-7	0.0111296	2.17097e-4
chr5	140669853	140669953	2504632	0	+	0.47	(0.44,0.476]	chr5	239541	3	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	WDR55	ENSG00000120314.19	ENST00000506393.5:ENST00000358337.10:ENST00000511232.5:ENST00000504897.2:ENST00000520764.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	192	2	2.61256	3.030925	3.44929	2.78737e-4	7.42039e-6	0.0148795	0.00205092
chr16	16551699	16551799	6311379	0	+	0.29	(0.28,0.32]	chr16	604098	517	INTRON	INTRON	ENSG00000260126	ENSG00000260126.2	ENST00000567465.2	lncRNA	lncRNA	lncRNA	lncRNA	3	85	2	2.42868	3.03072	3.63276	0.0105331	0.00114475	0.0908969	0.0308149
chr8	52646267	52646367	3950408	0	-	0.44	(0.408,0.44]	chr8	362311	4	SS3_PROX	SS3_PROX:INTRON	RB1CC1	ENSG00000023287.13	ENST00000025008.10:ENST00000435644.6:ENST00000521611.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	79	2	2.46587	3.030715	3.59556	0.00280622	8.33275e-4	0.0488779	0.0266389
chr20	441060	441147	7303010	0	-	0.321839	(0.32,0.35]	chr20	743445	1	EXON_MRNA	EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TBC1D20	ENSG00000125875.15	ENST00000680792.1:ENST00000354200.5:ENST00000461304.5:ENST00000681539.1:ENST00000679741.1:ENST00000680990.1:ENST00000681129.1:ENST00000681414.1:ENST00000681441.1:ENST00000680088.1:ENST00000680284.1:ENST00000681777.1:ENST00000681389.1:ENST00000679895.1:ENST00000680491.1:ENST00000679451.1:ENST00000679953.1:ENST00000461188.6:ENST00000680815.1:ENST00000680521.1:ENST00000681193.1:ENST00000681551.1:ENST00000679973.1:ENST00000680911.1:ENST00000679944.1:ENST00000681636.1:ENST00000680106.1:ENST00000494633.1:ENST00000680050.1:ENST00000681742.1:ENST00000680515.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	57	2	2.68921	3.0306550000000003	3.3721	0.0230336	0.00182912	0.118056	0.0396683
chr9	91913973	91914072	4284905	0	-	0.313131	(0.28,0.32]	chr9	393921	269	INTRON	INTRON	ROR2	ENSG00000169071.15	ENST00000375715.5:ENST00000375708.4:ENST00000495386.5:ENST00000546883.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	135	2	2.64874	3.030645	3.41255	0.00235868	1.55656e-4	0.0436827	0.0106835
chr17	82529391	82529491	6692701	0	+	0.49	(0.476,0.515]	chr17	654627	87	INTRON	INTRON	FOXK2	ENSG00000141568.21	ENST00000473637.6:ENST00000335255.10:ENST00000527313.6:ENST00000570585.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	160	2	2.75798	3.0305	3.30302	1.21235e-4	5.43881e-5	0.0094154	0.00651399
chr16	89542181	89542279	6420700	0	+	0.438776	(0.408,0.44]	chr16	616266	11	UTR3	UTR3:EXON_MRNA:INTRON	SPG7	ENSG00000197912.16	ENST00000647079.1:ENST00000646303.1:ENST00000643649.1:ENST00000644498.1:ENST00000645897.1:ENST00000643668.1:ENST00000644225.1:ENST00000645818.2:ENST00000645977.1:ENST00000645063.1:ENST00000646263.1:ENST00000643724.1:ENST00000644781.1:ENST00000644901.1:ENST00000645042.1:ENST00000646531.1:ENST00000646930.1:ENST00000644210.1:ENST00000646589.1:ENST00000268704.7:ENST00000646826.1:ENST00000646716.1:ENST00000643345.1:ENST00000646958.1:ENST00000643105.1:ENST00000645354.1:ENST00000642334.1:ENST00000647227.1:ENST00000646445.1:ENST00000643954.1:ENST00000646399.1:ENST00000644671.1:ENST00000644748.1:ENST00000643496.1:ENST00000647032.1:ENST00000644751.1:ENST00000642427.1:ENST00000643370.1:ENST00000645886.1:ENST00000646454.1:ENST00000561945.2:ENST00000644171.1:ENST00000566682.2:ENST00000645258.1:ENST00000644044.1:ENST00000642263.1:ENST00000644556.1:ENST00000645842.1:ENST00000643734.1:ENST00000642814.1:ENST00000644061.1:ENST00000643350.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	71	2	2.21238	3.030485	3.84859	0.0193525	2.66911e-4	0.119831	0.0149989
chr1	168052032	168052132	249664	0	+	0.47	(0.44,0.476]	chr1	29648	7	INTRON	INTRON	DCAF6	ENSG00000143164.16	ENST00000432587.6:ENST00000367843.7:ENST00000367840.4:ENST00000312263.10:ENST00000489398.1:ENST00000478668.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	49	2	2.80275	3.03038	3.25801	0.0146513	0.00248185	0.0982604	0.0460771
chr6	7177273	7177371	2799061	0	+	0.44898	(0.44,0.476]	chr6	263739	1	INTRON	INTRON	RREB1	ENSG00000124782.21	ENST00000379933.7:ENST00000491191.5:ENST00000471433.5:ENST00000379938.7:ENST00000467782.5:ENST00000349384.10:ENST00000334984.10:ENST00000475946.5:ENST00000483150.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	49	2	2.80275	3.03038	3.25801	0.0146513	0.00248185	0.0982604	0.0460771
chr6	36479711	36479811	2854291	0	+	0.34	(0.32,0.35]	chr6	269743	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	KCTD20	ENSG00000112078.14	ENST00000536244.5:ENST00000373731.7:ENST00000474988.5:ENST00000481911.5:ENST00000449081.6:ENST00000265344.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	57	2	3.0247	3.030335	3.03597	0.00832487	0.00671684	0.0774402	0.0738715
chr15	66500562	66500655	6210614	0	-	0.55914	(0.515,0.57]	chr15	592722	3	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPL4	ENSG00000174444.15	ENST00000307961.11:ENST00000567229.5:ENST00000568588.5:ENST00000561775.5:ENST00000569696.5:ENST00000564744.1:ENST00000564647.5:ENST00000563473.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	39	2	2.01978	3.03032	4.04086	0.0197045	0.0165522	0.120063	0.102621
chr1	155170344	155170441	559885	0	-	0.371134	(0.35,0.378]	chr1	66686	6	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	KRTCAP2	ENSG00000163463.13	ENST00000491084.5:ENST00000295682.6:ENST00000497317.5:ENST00000487350.5:ENST00000463527.5:ENST00000490672.2:ENST00000482246.5:ENST00000471891.5:ENST00000461136.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	57	2	2.32443	3.03026	3.73609	0.0544216	3.31057e-4	0.164972	0.0161599
chr10	72755998	72756098	4450734	0	+	0.46	(0.44,0.476]	chr10	410760	191	INTRON	INTRON	MCU	ENSG00000156026.15	ENST00000373053.8:ENST00000357157.10:ENST00000604679.5:ENST00000604372.5:ENST00000603649.5:ENST00000605597.5:ENST00000536019.5:ENST00000604152.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	49	2	2.97451	3.0302100000000003	3.08591	0.00853825	0.00481262	0.0780043	0.0638089
chr16	15073380	15073480	6450227	0	-	0.45	(0.44,0.476]	chr16	621482	3	SS3_PROX	SS3_PROX:INTRON	RRN3	ENSG00000085721.13	ENST00000198767.11:ENST00000563559.5:ENST00000429751.6:ENST00000327307.11	protein_coding	protein_coding	protein_coding	protein_coding	2	49	2	2.97451	3.0302100000000003	3.08591	0.00853825	0.00481262	0.0780043	0.0638089
chr6	87227331	87227431	2913983	0	+	0.23	[0,0.28]	chr6	275311	35	INTRON	INTRON	ZNF292	ENSG00000188994.13	ENST00000369577.8:ENST00000518845.1:ENST00000339907.8:ENST00000496806.2	protein_coding	protein_coding	protein_coding	protein_coding	4	116	2	2.19624	3.030125	3.86401	0.0108335	6.37628e-4	0.0920781	0.0231685
chr11	120417480	120417579	4877015	0	+	0.393939	(0.378,0.408]	chr11	455815	58	INTRON	INTRON	ARHGEF12	ENSG00000196914.9	ENST00000397843.7:ENST00000356641.7:ENST00000532993.5:ENST00000529970.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	51	2	2.72993	3.030095	3.33026	0.0188736	0.00189824	0.108861	0.0402736
chr8	92778875	92778975	3989894	0	-	0.42	(0.408,0.44]	chr8	365352	134	INTRON	INTRON	FLJ46284	ENSG00000248858.7	ENST00000504861.2	lncRNA	lncRNA	lncRNA	lncRNA	3	66	2	2.906	3.0300700000000003	3.15414	0.00469847	0.00131817	0.0600108	0.0333932
chr17	31316576	31316675	6593411	0	+	0.393939	(0.378,0.408]	chr17	641280	18	INTRON	INTRON	NF1	ENSG00000196712.20	ENST00000696138.1:ENST00000356175.7:ENST00000691014.1:ENST00000358273.9:ENST00000579081.5:ENST00000456735.6:ENST00000493220.5:ENST00000687863.1:ENST00000581113.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	51	2	3.00568	3.0298049999999996	3.05393	0.00811866	0.00551532	0.0766625	0.0672816
chr6	42050901	42050992	2864669	0	+	0.384615	(0.378,0.408]	chr6	270951	4	UTR5	UTR5:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TAF8	ENSG00000137413.17	ENST00000372978.7:ENST00000686935.1:ENST00000372982.8:ENST00000456846.6:ENST00000494547.5:ENST00000372977.8:ENST00000688562.1:ENST00000686229.1:ENST00000691805.1:ENST00000472818.6:ENST00000486070.1:ENST00000687601.1:ENST00000688007.1:ENST00000689833.1:ENST00000482926.1:ENST00000687266.1:ENST00000465926.5:ENST00000482432.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	51	2	3.00568	3.0298049999999996	3.05393	0.00811866	0.00551532	0.0766625	0.0672816
chrX	11425248	11425348	7761607	0	-	0.4	(0.378,0.408]	chrX	793522	895	INTRON	INTRON	ARHGAP6	ENSG00000047648.23	ENST00000380736.5:ENST00000337414.9:ENST00000495242.5:ENST00000489330.6:ENST00000380718.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	51	2	3.00568	3.0298049999999996	3.05393	0.00811866	0.00551532	0.0766625	0.0672816
chr11	2957898	2957998	4891639	0	-	0.57	(0.515,0.57]	chr11	458298	1	SS5_PROX	SS5_PROX:INTRON	NAP1L4	ENSG00000205531.13	ENST00000620138.4:ENST00000380542.9:ENST00000526115.5:ENST00000492685.5:ENST00000528363.5:ENST00000483643.7:ENST00000528261.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	43	2	2.68833	3.02979	3.37125	0.0184931	0.00136343	0.108861	0.0339121
chr2	241324341	241324408	1053697	0	+	0.223881	[0,0.28]	chr2	112210	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SEPTIN2	ENSG00000168385.18	ENST00000391973.6:ENST00000428282.5:ENST00000492978.5:ENST00000360051.7:ENST00000407017.5:ENST00000445030.5:ENST00000428524.5:ENST00000469434.5:ENST00000616972.4:ENST00000495463.5:ENST00000482304.5:ENST00000475474.5:ENST00000401990.5:ENST00000469175.5:ENST00000407971.5:ENST00000461048.5:ENST00000457335.5:ENST00000436795.5:ENST00000494824.5:ENST00000411484.5:ENST00000462147.5:ENST00000434955.5:ENST00000466211.5:ENST00000391971.7:ENST00000402092.6:ENST00000484740.1:ENST00000473479.5:ENST00000464128.5:ENST00000441533.5:ENST00000467971.5:ENST00000425899.5:ENST00000443492.5:ENST00000437066.5:ENST00000429791.5:ENST00000420786.5:ENST00000475823.5:ENST00000449239.5:ENST00000366210.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	186	2	2.76796	3.029725	3.29149	0.00192631	8.899e-5	0.0397399	0.00793468
chr16	23947124	23947223	6324872	0	+	0.545455	(0.515,0.57]	chr16	605701	534	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000498739.1	protein_coding	protein_coding	protein_coding	protein_coding	3	57	2	2.38476	3.029645	3.67453	0.0110593	3.27949e-4	0.0873897	0.0160995
chr10	124918571	124918671	4535275	0	+	0.45	(0.44,0.476]	chr10	418562	9	INTRON	INTRON	ENSG00000249456	ENSG00000249456.1	ENST00000508096.1	lncRNA	lncRNA	lncRNA	lncRNA	2	30	2	1.93084	3.029635	4.12843	0.0443175	0.0337192	0.162302	0.134145
chr5	7889871	7889967	2316898	0	+	0.46875	(0.44,0.476]	chr5	224451	2	SS3_PROX	SS3_PROX:INTRON	MTRR	ENSG00000124275.15	ENST00000264668.6:ENST00000513439.5:ENST00000511461.5:ENST00000440940.7:ENST00000510525.5:ENST00000508101.5:ENST00000509961.5:ENST00000512311.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	30	2	1.93084	3.029635	4.12843	0.0443175	0.0337192	0.162302	0.134145
chr6	109376907	109377005	3185859	0	-	0.44898	(0.44,0.476]	chr6	296670	4	INTRON	INTRON	CD164	ENSG00000135535.17	ENST00000310786.10:ENST00000413644.6:ENST00000504373.2:ENST00000324953.9:ENST00000275080.11:ENST00000499860.6:ENST00000512821.5:ENST00000506649.5:ENST00000512212.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	30	2	1.93084	3.029635	4.12843	0.0443175	0.0337192	0.162302	0.134145
chr9	128089764	128089864	4202647	0	+	0.49	(0.476,0.515]	chr9	383913	208	INTRON	INTRON	SLC25A25	ENSG00000148339.13	ENST00000373068.6:ENST00000373069.10	protein_coding	protein_coding	protein_coding	protein_coding	3	65	2	2.72507	3.0296149999999997	3.33416	0.0029369	0.00230489	0.0496505	0.0428247
chrX	154704547	154704647	7914851	0	-	0.27	[0,0.28]	chrX	806091	41	INTRON	INTRON	GAB3	ENSG00000160219.12	ENST00000496390.5:ENST00000424127.3:ENST00000369575.7:ENST00000369568.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	71	2	2.90797	3.029495	3.15102	0.0118539	0.00767596	0.0962115	0.0753665
chr16	22272629	22272728	6321357	0	+	0.393939	(0.378,0.408]	chr16	605161	54	INTRON	INTRON	EEF2K	ENSG00000103319.12	ENST00000263026.10	protein_coding	protein_coding	protein_coding	protein_coding	4	82	2	2.35168	3.029485	3.70729	0.0046563	5.5156e-4	0.0629753	0.0216014
chr10	21555946	21556044	4404628	0	+	0.520408	(0.515,0.57]	chr10	406433	37	INTRON	INTRON	MLLT10	ENSG00000078403.17	ENST00000651097.1:ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000377100.8:ENST00000377091.7:ENST00000650772.1:ENST00000651298.1:ENST00000652497.1:ENST00000495130.5:ENST00000377059.7:ENST00000621220.4:ENST00000476557.5:ENST00000462999.5:ENST00000430455.2:ENST00000479634.1:ENST00000480415.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	124	2	2.95293	3.0294299999999996	3.10593	2.71022e-4	2.50623e-5	0.0150944	0.00392664
chr17	30517554	30517653	6589470	0	+	0.282828	(0.28,0.32]	chr17	640823	63	INTRON	INTRON	GOSR1	ENSG00000108587.16	ENST00000225724.9:ENST00000451249.7:ENST00000427274.6:ENST00000467337.6:ENST00000581721.5:ENST00000414833.2:ENST00000494918.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	62	2	2.62686	3.02936	3.43186	0.0289217	0.00160646	0.1274	0.0367961
chr11	65188946	65189046	4804461	0	+	0.55	(0.515,0.57]	chr11	446276	2	SS5_PROX	SS5_PROX:INTRON	CAPN1	ENSG00000014216.16	ENST00000533820.5:ENST00000533129.5:ENST00000524773.5:ENST00000279247.11:ENST00000527323.5:ENST00000533079.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	43	2	2.9114	3.02935	3.1473	0.00826019	0.00397184	0.0813266	0.0549214
chrX	41206776	41206874	7645318	0	+	0.520408	(0.515,0.57]	chrX	782409	9	INTRON	INTRON	USP9X	ENSG00000124486.14	ENST00000324545.9:ENST00000378308.7:ENST00000487625.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	43	2	2.9114	3.02935	3.1473	0.00826019	0.00397184	0.0813266	0.0549214
chr7	40055547	40055646	3311685	0	+	0.373737	(0.35,0.378]	chr7	307518	65	INTRON	INTRON	CDK13	ENSG00000065883.17	ENST00000340829.10:ENST00000181839.10:ENST00000613626.4:ENST00000646039.1:ENST00000643859.1:ENST00000484589.2:ENST00000643915.1:ENST00000645470.1:ENST00000642592.1	protein_coding	protein_coding	protein_coding	protein_coding	3	72	2	3.02027	3.029205	3.03814	0.00767003	8.40802e-4	0.075364	0.0263691
chr1	109215648	109215747	179609	0	+	0.272727	[0,0.28]	chr1	19612	6	INTRON	INTRON	SARS1	ENSG00000031698.13	ENST00000234677.7:ENST00000477544.5:ENST00000369923.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	293	2	2.34492	3.029095	3.71327	3.45713e-4	1.17493e-4	0.0165457	0.0098177
chr21	43760423	43760523	7413589	0	+	0.56	(0.515,0.57]	chr21	755598	45	UTR3	UTR3:EXON_MRNA	PDXK	ENSG00000160209.19	ENST00000468090.5:ENST00000291565.9:ENST00000467908.1	protein_coding	protein_coding	protein_coding	protein_coding	8	102	2	1.67702	3.029085	4.38115	0.0122403	5.49576e-6	0.0910127	0.00162772
chr11	43432964	43433064	4777306	0	+	0.43	(0.408,0.44]	chr11	441769	178	INTRON	INTRON	TTC17	ENSG00000052841.15	ENST00000039989.9:ENST00000299240.10:ENST00000526774.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	79	2	2.60785	3.02902	3.45019	0.00152664	0.00146754	0.0353936	0.035104
chr2	86725391	86725490	823528	0	+	0.545455	(0.515,0.57]	chr2	92028	42	INTRON	INTRON	RMND5A	ENSG00000153561.13	ENST00000283632.5	protein_coding	protein_coding	protein_coding	protein_coding	2	46	2	2.56306	3.02901	3.49496	0.0247751	9.61701e-4	0.131869	0.0282401
chr1	172549518	172549618	254850	0	+	0.3	(0.28,0.32]	chr1	30357	157	INTRON	INTRON	SUCO	ENSG00000094975.14	ENST00000367723.8:ENST00000608151.5:ENST00000616058.4:ENST00000263688.4:ENST00000610051.5:ENST00000608566.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	36	2	2.0243	3.028875	4.03345	0.0704058	0.0364967	0.184298	0.153759
chr2	171109260	171109360	1263581	0	-	0.29	(0.28,0.32]	chr2	133913	176	INTRON	INTRON	TLK1	ENSG00000198586.14	ENST00000431350.7:ENST00000360843.7:ENST00000359766.7:ENST00000521943.5:ENST00000409443.6:ENST00000413010.5:ENST00000470340.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	36	2	2.0243	3.028875	4.03345	0.0704058	0.0364967	0.184298	0.153759
chr16	18923227	18923326	6458079	0	-	0.414141	(0.408,0.44]	chr16	622895	117	INTRON	INTRON	SMG1	ENSG00000157106.18	ENST00000446231.7:ENST00000532700.6:ENST00000569122.1	protein_coding	protein_coding	protein_coding	protein_coding	3	36	2	1.6306	3.028865	4.42713	0.0544158	0.0173083	0.182272	0.104099
chr21	29044591	29044689	7390174	0	+	0.44898	(0.44,0.476]	chr21	753021	6	INTRON	INTRON	USP16	ENSG00000156256.15	ENST00000399975.7:ENST00000334352.8:ENST00000474835.5:ENST00000399976.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	52	2	2.66433	3.028775	3.39322	0.0194358	0.00187283	0.119831	0.0390476
chr3	172080397	172080497	1559952	0	+	0.37	(0.35,0.378]	chr3	161527	331	INTRON	INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000421757.5:ENST00000469491.5:ENST00000336824.8:ENST00000423424.5:ENST00000416957.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	71	2	2.80179	3.02864	3.25549	0.00363602	0.00223906	0.0535085	0.0435144
chr7	128754061	128754161	3408528	0	+	0.44	(0.408,0.44]	chr7	318436	4	SS3_PROX	SS3_PROX:INTRON	CALU	ENSG00000128595.17	ENST00000535011.6:ENST00000542996.6:ENST00000249364.9:ENST00000449187.6:ENST00000479257.5	protein_coding	protein_coding	protein_coding	protein_coding	9	185	2	2.99916	3.0285849999999996	3.05801	8.06002e-5	2.62474e-5	0.00804467	0.00402784
chr17	42507727	42507813	6611803	0	+	0.5	(0.476,0.515]	chr17	644177	1	SS5_PROX	SS5_PROX:INTRON	ATP6V0A1	ENSG00000033627.17	ENST00000393829.6:ENST00000343619.9:ENST00000537728.5:ENST00000264649.10:ENST00000585525.5:ENST00000544137.5:ENST00000587510.5:ENST00000586201.5:ENST00000588138.1:ENST00000585828.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	36	2	1.61586	3.02857	4.44128	0.0567093	0.0151924	0.185107	0.0994339
chr5	54330908	54331008	2353930	0	+	0.45	(0.44,0.476]	chr5	227055	76	INTRON	INTRON	LINC01033	ENSG00000249069.8	ENST00000665899.1:ENST00000653566.1:ENST00000655801.1:ENST00000654906.1:ENST00000667636.1:ENST00000665869.1:ENST00000664079.1:ENST00000659703.1:ENST00000662351.1:ENST00000523194.7:ENST00000665795.1:ENST00000667992.1:ENST00000662022.1:ENST00000657771.1:ENST00000517934.1	lncRNA	lncRNA	lncRNA	lncRNA	7	146	2	2.78097	3.02855	3.27613	2.31078e-4	6.65358e-5	0.0134209	0.00718589
chr15	84526976	84527047	6250928	0	-	0.323944	(0.32,0.35]	chr15	596546	1	SS3_PROX	SS3_PROX:INTRON	UBE2Q2P1	ENSG00000189136.9	ENST00000354771.8	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	4	103	2	2.99898	3.02853	3.05808	0.00148392	7.67153e-4	0.034977	0.0254532
chr7	128548126	128548226	3407525	0	+	0.51	(0.476,0.515]	chr7	318333	140	INTRON	INTRON	ENSG00000280828	ENSG00000280828.1	ENST00000479267.2	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	3	65	2	2.81076	3.02836	3.24596	0.00322919	0.00203568	0.0507087	0.0417667
chr15	95652048	95652148	6108486	0	+	0.35	(0.32,0.35]	chr15	581765	132	INTRON	INTRON	ENSG00000275016	ENSG00000275016.5	ENST00000612595.2:ENST00000661571.1:ENST00000614344.5:ENST00000667344.1:ENST00000666682.1:ENST00000663174.1:ENST00000661536.1:ENST00000615194.1:ENST00000667774.1:ENST00000616588.4:ENST00000656202.1:ENST00000666386.1:ENST00000611285.1	lncRNA	lncRNA	lncRNA	lncRNA	2	33	2	1.88468	3.028245	4.17181	0.0515071	0.04531	0.176696	0.149888
chr8	128012341	128012441	3862257	0	+	0.33	(0.32,0.35]	chr8	355517	15	INTRON	INTRON	PVT1	ENSG00000249859.13	ENST00000667305.1:ENST00000690350.1:ENST00000653522.1:ENST00000661830.1:ENST00000657289.1:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000657211.1:ENST00000653845.1:ENST00000651587.1:ENST00000692980.1:ENST00000654324.1:ENST00000657693.1:ENST00000666080.1:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000662410.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000657356.1:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000667714.1:ENST00000654105.1:ENST00000660438.1:ENST00000664995.1:ENST00000670714.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000668123.1:ENST00000666776.1:ENST00000659912.1:ENST00000670532.1:ENST00000523068.2:ENST00000671088.1:ENST00000670204.1:ENST00000663461.1:ENST00000513868.6:ENST00000692433.1:ENST00000523190.7:ENST00000685606.1:ENST00000690788.1:ENST00000685634.1:ENST00000653990.1:ENST00000655783.1:ENST00000656411.1:ENST00000664742.1:ENST00000655099.1:ENST00000662709.1:ENST00000512617.7:ENST00000660122.1:ENST00000666452.1:ENST00000659666.1:ENST00000659892.1:ENST00000521600.5:ENST00000522875.5:ENST00000653497.1:ENST00000668098.1:ENST00000659106.1:ENST00000666147.1:ENST00000658350.1:ENST00000656999.1:ENST00000664610.1:ENST00000671092.1:ENST00000653853.1	lncRNA	lncRNA	lncRNA	lncRNA	2	33	2	1.88468	3.028245	4.17181	0.0515071	0.04531	0.176696	0.149888
chr9	72355063	72355162	4266173	0	-	0.323232	(0.32,0.35]	chr9	392613	38	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ZFAND5	ENSG00000107372.13	ENST00000376962.10:ENST00000237937.7:ENST00000376960.8:ENST00000488164.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	33	2	1.88468	3.028245	4.17181	0.0515071	0.04531	0.176696	0.149888
chr1	90003114	90003213	160767	0	+	0.454545	(0.44,0.476]	chr1	17309	46	INTRON	INTRON	ZNF326	ENSG00000162664.17	ENST00000340281.9:ENST00000394583.7:ENST00000361911.9:ENST00000370447.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	47	2	1.44993	3.0282	4.60647	0.045367	0.0102339	0.164236	0.0850389
chr7	158828209	158828303	3689801	0	-	0.425532	(0.408,0.44]	chr7	342425	7	INTRON	INTRON	ESYT2	ENSG00000117868.18	ENST00000251527.10:ENST00000275418.13:ENST00000652148.1:ENST00000497111.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	80	2	2.76768	3.0281000000000002	3.28852	0.00287185	6.71664e-4	0.0474836	0.0235155
chr1	150810192	150810289	552291	0	-	0.42268	(0.408,0.44]	chr1	64901	6	UTR3	UTR3:EXON_MRNA	ARNT	ENSG00000143437.21	ENST00000358595.10:ENST00000471844.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	81	2	2.85572	3.0280300000000002	3.20034	0.00398025	4.26582e-4	0.0549214	0.0184578
chr6	158816883	158816982	3253313	0	-	0.50505	(0.476,0.515]	chr6	302380	272	INTRON	INTRON	EZR	ENSG00000092820.19	ENST00000337147.11:ENST00000367075.4:ENST00000476189.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	66	2	2.48551	3.027955	3.5704	0.00756632	8.75056e-4	0.0773151	0.0270926
chr20	47304401	47304501	7348986	0	-	0.46	(0.44,0.476]	chr20	749336	51	INTRON	INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000468376.2:ENST00000435836.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	66	2	2.59632	3.027945	3.45957	0.00579248	0.00106385	0.0662959	0.0300133
chr7	130134614	130134713	3414247	0	+	0.373737	(0.35,0.378]	chr7	319162	40	UTR3	UTR3:EXON_MRNA	KLHDC10	ENSG00000128607.14	ENST00000335420.10	protein_coding	protein_coding	protein_coding	protein_coding	7	148	2	2.0645	3.027915	3.99133	0.00612402	3.5131e-6	0.0676501	0.0012166
chr16	2155329	2155405	6431363	0	-	0.578947	(0.57,1]	chr16	618735	4	EXON_LNCRNA	EXON_LNCRNA	SNHG19	ENSG00000260260.2	ENST00000563192.2:ENST00000686899.1:ENST00000688686.1:ENST00000690872.1:ENST00000686256.1:ENST00000691298.1:ENST00000689999.1	lncRNA	lncRNA	lncRNA	lncRNA	4	47	2	2.95123	3.02783	3.10443	8.39007e-4	3.67483e-4	0.0263691	0.017788000000000002
chr11	3008606	3008703	4892087	0	-	0.443299	(0.44,0.476]	chr11	458411	18	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:INTRON	CARS1	ENSG00000110619.18	ENST00000397111.9:ENST00000531387.5:ENST00000380525.9:ENST00000278224.13:ENST00000529772.5:ENST00000526890.5:ENST00000470221.6:ENST00000466442.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	51	2	2.46135	3.02776	3.59417	0.0374637	5.78231e-4	0.140008	0.0218253
chr2	144520030	144520122	1241826	0	-	0.51087	(0.476,0.515]	chr2	131788	2	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	ZEB2	ENSG00000169554.23	ENST00000636471.1:ENST00000627532.3:ENST00000419938.5:ENST00000636026.2:ENST00000675069.1:ENST00000689298.1:ENST00000539609.7:ENST00000637267.2:ENST00000465308.5:ENST00000472146.5:ENST00000476394.5:ENST00000453352.5:ENST00000444559.5:ENST00000465070.5:ENST00000636445.1:ENST00000629520.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	160	2	2.59842	3.0277149999999997	3.45701	4.33261e-4	1.2733e-5	0.0190829	0.00265846
chr14	101869649	101869748	5819592	0	+	0.565657	(0.515,0.57]	chr14	551879	124	INTRON	INTRON	PPP2R5C	ENSG00000078304.20	ENST00000694906.1:ENST00000422945.6:ENST00000328724.9:ENST00000350249.7:ENST00000557621.5:ENST00000556307.5:ENST00000553730.5:ENST00000334743.9:ENST00000445439.7:ENST00000557095.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	103	2	2.60908	3.0275	3.44592	5.10997e-4	8.97344e-5	0.020315	0.00844245
chr12	76075038	76075138	5370129	0	-	0.32	(0.28,0.32]	chr12	512329	4	INTRON	INTRON	NAP1L1	ENSG00000187109.15	ENST00000618691.5:ENST00000393263.7:ENST00000431879.7:ENST00000547773.5:ENST00000544816.5:ENST00000542344.5:ENST00000535020.6:ENST00000549596.5:ENST00000552342.5:ENST00000548044.5:ENST00000550934.5:ENST00000551992.5:ENST00000548273.5:ENST00000551600.5:ENST00000547704.5:ENST00000549988.5:ENST00000547479.5:ENST00000549479.1:ENST00000551500.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	236	2	2.91036	3.0274349999999997	3.14451	3.49042e-4	2.0537e-5	0.017404	0.00352433
chr19	28533600	28533700	7166431	0	-	0.4	(0.378,0.408]	chr19	724189	654	INTRON	INTRON	ENSG00000283403:ENSG00000267243	ENSG00000283403.1:ENSG00000267243.6	ENST00000592347.5:ENST00000593065.5	lncRNA	lncRNA	lncRNA	lncRNA	43	870	2	2.68057	3.02743	3.37429	7.35132e-6	1.351e-8	0.00205092	3.96402e-5
chr6	131626051	131626145	3221655	0	-	0.457447	(0.44,0.476]	chr6	299469	7	INTRON	INTRON	MED23	ENSG00000112282.18	ENST00000354577.8:ENST00000368068.8:ENST00000368060.7:ENST00000368058.5:ENST00000368053.8:ENST00000539158.1	protein_coding	protein_coding	protein_coding	protein_coding	8	117	2	1.84951	3.0273950000000003	4.20528	0.00567535	4.25825e-5	0.0678837	0.00555805
chr20	2653893	2653984	7222212	0	+	0.692308	(0.57,1]	chr20	733829	1	SS3_PROX	SS3_PROX:INTRON	NOP56	ENSG00000101361.17	ENST00000651302.1:ENST00000329276.10:ENST00000494697.5:ENST00000469588.5:ENST00000445139.1:ENST00000460258.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	13	151	2	2.64388	3.027395	3.41091	1.46112e-4	2.47215e-8	0.0105174	5.36307e-5
chr14	105425238	105425338	5830696	0	+	0.5	(0.476,0.515]	chr14	553564	48	INTRON	INTRON	TEX22:MTA1	ENSG00000226174.7:ENSG00000182979.18	ENST00000548638.5:ENST00000435036.6:ENST00000331320.12:ENST00000406191.5:ENST00000405646.5:ENST00000438610.5:ENST00000551236.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	32	2	1.72558	3.027365	4.32915	0.0767648	0.0124637	0.196164	0.0973643
chr16	31184581	31184667	6340603	0	+	0.476744	(0.476,0.515]	chr16	608334	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	FUS	ENSG00000089280.19	ENST00000566605.5:ENST00000254108.12:ENST00000380244.7:ENST00000487509.6:ENST00000568685.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	32	2	1.72558	3.027365	4.32915	0.0767648	0.0124637	0.196164	0.0973643
chrX	73999014	73999113	7682651	0	+	0.484848	(0.476,0.515]	chrX	786650	21	EXON_LNCRNA	EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	JPX	ENSG00000225470.8	ENST00000664637.1:ENST00000639185.1:ENST00000655090.1:ENST00000640437.1:ENST00000660546.1:ENST00000667886.1:ENST00000660840.1:ENST00000657179.1:ENST00000670506.1:ENST00000657910.1:ENST00000662120.1:ENST00000671207.1:ENST00000659254.1:ENST00000667573.1:ENST00000660856.1:ENST00000660836.1:ENST00000668590.1:ENST00000658649.1:ENST00000414209.6:ENST00000654137.1:ENST00000670994.1:ENST00000602772.5:ENST00000655879.1:ENST00000657372.1:ENST00000657096.1:ENST00000602985.6:ENST00000670685.1:ENST00000670503.1:ENST00000663027.1:ENST00000654995.1:ENST00000602895.6:ENST00000654374.1:ENST00000660087.1:ENST00000665032.1:ENST00000671336.1:ENST00000671476.1:ENST00000667057.1:ENST00000670192.1:ENST00000670464.1:ENST00000665345.1:ENST00000661546.1:ENST00000662543.1:ENST00000602938.6:ENST00000664295.1:ENST00000654005.1:ENST00000669149.1:ENST00000659852.1:ENST00000656509.1:ENST00000602294.6:ENST00000667294.1:ENST00000663470.1:ENST00000602920.6:ENST00000671021.1:ENST00000659849.1:ENST00000667937.1:ENST00000661130.1:ENST00000654196.1:ENST00000655994.1:ENST00000659373.1:ENST00000662239.1:ENST00000670805.1:ENST00000656263.1:ENST00000653069.1:ENST00000657638.1:ENST00000653808.1:ENST00000653929.1:ENST00000653885.1:ENST00000659023.1:ENST00000602546.5:ENST00000659622.1:ENST00000671518.1:ENST00000670408.1:ENST00000666059.1:ENST00000668488.1:ENST00000666318.1	lncRNA	lncRNA	lncRNA	lncRNA	2	32	2	1.72558	3.027365	4.32915	0.0767648	0.0124637	0.196164	0.0973643
chr12	116083373	116083473	5423600	0	-	0.41	(0.408,0.44]	chr12	518245	604	INTRON	INTRON	MED13L	ENSG00000123066.9	ENST00000281928.9:ENST00000650226.1:ENST00000648737.1:ENST00000548743.2:ENST00000647567.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	13	155	2	1.33859	3.02731	4.71603	0.021497	2.43492e-6	0.123836	0.00108935
chr3	196503272	196503371	1900019	0	-	0.484848	(0.476,0.515]	chr3	190266	2	UTR5	UTR5:EXON_MRNA	RNF168	ENSG00000163961.4	ENST00000318037.3:ENST00000437070.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	49	2	1.61324	3.02726	4.44128	0.026684	0.0151924	0.134419	0.0994339
chr19	49672998	49673097	7090393	0	+	0.555556	(0.515,0.57]	chr19	710139	4	INTRON	INTRON	BCL2L12	ENSG00000126453.10	ENST00000611631.4:ENST00000614495.4:ENST00000616144.4:ENST00000619007.4:ENST00000246785.7:ENST00000441864.6:ENST00000246784.8:ENST00000594157.5:ENST00000598979.5:ENST00000600947.5:ENST00000598306.2:ENST00000594793.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	44	2	2.74772	3.0271850000000002	3.30665	0.0142192	0.00213226	0.103638	0.041756
chr1	213146774	213146874	311662	0	+	0.42	(0.408,0.44]	chr1	35945	165	INTRON	INTRON	RPS6KC1	ENSG00000136643.12	ENST00000615329.4:ENST00000543354.5:ENST00000614059.4:ENST00000543470.5:ENST00000366960.8:ENST00000366959.4:ENST00000490299.5:ENST00000468069.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	30	2	1.93243	3.0271500000000002	4.12187	0.0441194	0.0354689	0.162255	0.137535
chr10	7776978	7777075	4553223	0	-	0.412371	(0.408,0.44]	chr10	420329	8	INTRON	INTRON	KIN	ENSG00000151657.12	ENST00000379562.9	protein_coding	protein_coding	protein_coding	protein_coding	2	30	2	1.93243	3.0271500000000002	4.12187	0.0441194	0.0354689	0.162255	0.137535
chr10	63184507	63184607	4632547	0	-	0.41	(0.408,0.44]	chr10	426121	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	JMJD1C	ENSG00000171988.20	ENST00000399262.7:ENST00000402544.5:ENST00000542921.5:ENST00000327520.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	30	2	1.93243	3.0271500000000002	4.12187	0.0441194	0.0354689	0.162255	0.137535
chr13	46172439	46172539	5586701	0	-	0.41	(0.408,0.44]	chr13	533977	28	INTRON	INTRON	LCP1	ENSG00000136167.15	ENST00000398576.6:ENST00000323076.7:ENST00000442275.1:ENST00000460190.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	30	2	1.93243	3.0271500000000002	4.12187	0.0441194	0.0354689	0.162255	0.137535
chr6	57610053	57610153	2882041	0	+	0.44	(0.408,0.44]	chr6	273456	32	INTRON	INTRON	PRIM2	ENSG00000146143.19	ENST00000672107.1:ENST00000615550.5	protein_coding	protein_coding	protein_coding	protein_coding	2	30	2	1.93243	3.0271500000000002	4.12187	0.0441194	0.0354689	0.162255	0.137535
chr8	21969182	21969282	3711417	0	+	0.44	(0.408,0.44]	chr8	344411	3	SS3_PROX	SS3_PROX:INTRON	XPO7	ENSG00000130227.17	ENST00000252512.14:ENST00000521303.5:ENST00000519769.5:ENST00000518017.1:ENST00000433566.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	30	2	1.93243	3.0271500000000002	4.12187	0.0441194	0.0354689	0.162255	0.137535
chr8	55768977	55769077	3954625	0	-	0.42	(0.408,0.44]	chr8	362702	46	INTRON	INTRON	TMEM68	ENSG00000167904.16	ENST00000334667.6:ENST00000434581.7:ENST00000519784.5:ENST00000523073.5:ENST00000519780.5:ENST00000522090.5:ENST00000523423.5:ENST00000520414.5:ENST00000521229.5:ENST00000522576.5:ENST00000523180.5	protein_coding	protein_coding	protein_coding	protein_coding	2	30	2	1.93243	3.0271500000000002	4.12187	0.0441194	0.0354689	0.162255	0.137535
chr9	112693239	112693337	4318060	0	-	0.418367	(0.408,0.44]	chr9	397104	33	INTRON	INTRON	INIP	ENSG00000148153.14	ENST00000374242.9:ENST00000497712.6:ENST00000374236.5:ENST00000481146.6:ENST00000374234.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	30	2	1.93243	3.0271500000000002	4.12187	0.0441194	0.0354689	0.162255	0.137535
chr22	24541614	24541713	7563542	0	-	0.424242	(0.408,0.44]	chr22	773775	13	UTR3	UTR3:EXON_MRNA:INTRON	GUCD1	ENSG00000138867.17	ENST00000621833.4:ENST00000407471.7:ENST00000435822.6:ENST00000398245.8:ENST00000490922.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	167	2	2.869	3.027075	3.18515	1.08656e-4	6.73915e-5	0.00936278	0.00679256
chr5	66169554	66169653	2372752	0	+	0.333333	(0.32,0.35]	chr5	228682	48	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	SREK1	ENSG00000153914.16	ENST00000334121.11:ENST00000520953.5:ENST00000522912.5:ENST00000524111.5:ENST00000380918.7:ENST00000284041.7:ENST00000520580.5:ENST00000519259.5:ENST00000523655.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	154	2	1.80875	3.027065	4.24538	0.00484058	6.04054e-5	0.0640618	0.00682472
chr4	17631128	17631227	1927019	0	+	0.414141	(0.408,0.44]	chr4	193701	56	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	MED28	ENSG00000118579.13	ENST00000237380.12:ENST00000499786.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	128	2	3.01171	3.027045	3.04238	2.8363e-4	1.54233e-4	0.015495	0.0106835
chr20	32785259	32785359	7256886	0	+	0.56	(0.515,0.57]	chr20	737137	4	SS5_PROX	SS5_PROX:INTRON	DNMT3B	ENSG00000088305.19	ENST00000696232.1:ENST00000328111.6:ENST00000696231.1:ENST00000348286.6:ENST00000353855.6:ENST00000696233.1:ENST00000443239.7:ENST00000696234.1:ENST00000696235.1:ENST00000456297.6:ENST00000696236.1:ENST00000696237.1:ENST00000201963.3:ENST00000696238.1:ENST00000696239.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	57	2	2.51561	3.027025	3.53844	0.00635044	7.92613e-4	0.0723103	0.0259663
chr20	6023922	6024019	7230729	0	+	0.42268	(0.408,0.44]	chr20	734846	1	INTRON	INTRON	CRLS1	ENSG00000088766.12	ENST00000452938.5:ENST00000378863.9:ENST00000378868.4:ENST00000489345.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	90	2	2.32619	3.0269	3.72761	0.00239266	4.662e-4	0.0450826	0.0199613
chr13	28663098	28663189	5462463	0	+	0.362637	(0.35,0.378]	chr13	523359	2	INTRON	INTRON	POMP	ENSG00000132963.8	ENST00000460403.1:ENST00000380842.5	protein_coding	protein_coding	protein_coding	protein_coding	2	53	2	2.89003	3.0268699999999997	3.16371	0.0122391	0.00383956	0.0910127	0.0562562
chr7	43673418	43673518	3525817	0	-	0.36	(0.35,0.378]	chr7	328779	73	INTRON	INTRON	COA1	ENSG00000106603.20	ENST00000415076.6:ENST00000446330.6:ENST00000446564.5:ENST00000438444.5:ENST00000223336.11:ENST00000310564.10:ENST00000415798.5:ENST00000431651.5:ENST00000451651.5:ENST00000418140.5:ENST00000448704.5:ENST00000470156.1:ENST00000457939.1:ENST00000420441.1:ENST00000478504.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	53	2	2.89003	3.0268699999999997	3.16371	0.0122391	0.00383956	0.0910127	0.0562562
chr1	51836738	51836838	454871	0	-	0.24	[0,0.28]	chr1	54611	3	SS3_PROX	SS3_PROX:INTRON	NRDC	ENSG00000078618.23	ENST00000354831.11:ENST00000539524.5:ENST00000352171.12:ENST00000485608.5:ENST00000475715.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	70	2	3.00498	3.026825	3.04867	0.0104221	0.00876063	0.085482	0.0846118
chr7	72880782	72880881	3329803	0	+	0.626263	(0.57,1]	chr7	309555	5	INTRON	INTRON	POM121	ENSG00000196313.13	ENST00000627934.3:ENST00000395270.5	protein_coding	protein_coding	protein_coding	protein_coding	3	36	2	2.73499	3.02679	3.31859	0.00237434	0.00137292	0.0438057	0.0340241
chr17	41764512	41764612	6769101	0	-	0.37	(0.35,0.378]	chr17	666263	4	SS5_PROX	SS5_PROX:INTRON	JUP	ENSG00000173801.17	ENST00000310706.9:ENST00000393930.5:ENST00000393931.8	protein_coding	protein_coding	protein_coding	protein_coding	3	72	2	2.28125	3.026615	3.77198	0.0182271	2.78147e-4	0.107842	0.0148626
chr12	24945623	24945719	5297878	0	-	0.479167	(0.476,0.515]	chr12	503885	3	EXON_LNCRNA	EXON_LNCRNA:INTRON	BCAT1	ENSG00000060982.15	ENST00000261192.12:ENST00000342945.9:ENST00000539780.5:ENST00000546285.1:ENST00000355164.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	200	2	2.41697	3.026515	3.63606	2.06224e-4	7.49017e-6	0.0124899	0.00205959
chr2	151456720	151456820	893695	0	+	0.48	(0.476,0.515]	chr2	98993	1	SS5_PROX	SS5_PROX:INTRON	RIF1	ENSG00000080345.18	ENST00000453091.6:ENST00000428287.6:ENST00000444746.7:ENST00000243326.9:ENST00000430328.6	protein_coding	protein_coding	protein_coding	protein_coding	5	105	2	2.75286	3.026225	3.29959	7.3224e-4	2.65033e-4	0.0246502	0.0149989
chr6	90516109	90516207	3162067	0	-	0.408163	(0.378,0.408]	chr6	294892	27	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	MAP3K7	ENSG00000135341.18	ENST00000369332.7:ENST00000369327.7:ENST00000369325.7:ENST00000369329.8:ENST00000479630.1:ENST00000369320.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	52	2	2.85854	3.02611	3.19368	0.0107837	0.00426861	0.0920575	0.0573912
chr6	157834998	157835098	3015880	0	+	0.4	(0.378,0.408]	chr6	281353	49	INTRON	INTRON	SNX9	ENSG00000130340.17	ENST00000614703.4:ENST00000614800.4:ENST00000680863.1:ENST00000679814.1:ENST00000680464.1:ENST00000681186.1:ENST00000679732.1:ENST00000681183.1:ENST00000681534.1:ENST00000681651.1:ENST00000680089.1:ENST00000680078.1:ENST00000680974.1:ENST00000680095.1:ENST00000680015.1:ENST00000681138.1:ENST00000392185.8:ENST00000679790.1:ENST00000680495.1:ENST00000679691.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	52	2	2.85854	3.02611	3.19368	0.0107837	0.00426861	0.0920575	0.0573912
chr2	69375509	69375608	1147193	0	-	0.393939	(0.378,0.408]	chr2	122530	10	INTRON	INTRON	GFPT1	ENSG00000198380.13	ENST00000361060.5:ENST00000357308.9:ENST00000674507.1:ENST00000674438.1:ENST00000494201.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	39	2	1.94559	3.0261	4.10661	0.0399023	0.0211434	0.143072	0.122929
chr14	73062784	73062883	5784121	0	+	0.454545	(0.44,0.476]	chr14	547808	36	INTRON	INTRON	RBM25	ENSG00000119707.14	ENST00000527432.5:ENST00000531500.5:ENST00000261973.12:ENST00000532683.5:ENST00000525321.5:ENST00000526754.5:ENST00000525161.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	53	2	2.58033	3.026065	3.4718	0.0247511	0.00136358	0.131869	0.0336321
chr2	61335565	61335665	1129179	0	-	0.53	(0.515,0.57]	chr2	121404	12	INTRON	INTRON	USP34	ENSG00000115464.15	ENST00000398571.7	protein_coding	protein_coding	protein_coding	protein_coding	5	77	2	2.31394	3.026015	3.73809	0.00231716	3.11298e-4	0.0442594	0.0162055
chr2	214794215	214794312	1326032	0	-	0.340206	(0.32,0.35]	chr2	138633	14	INTRON	INTRON	BARD1	ENSG00000138376.11	ENST00000260947.9:ENST00000617164.5:ENST00000619009.5:ENST00000613374.5:ENST00000650978.1:ENST00000613706.5:ENST00000421162.2:ENST00000613192.2:ENST00000620057.4:ENST00000455743.5:ENST00000471787.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	78	2	2.72473	3.026015	3.3273	0.00433316	0.00218894	0.0579683	0.0435144
chr2	85043665	85043765	820994	0	+	0.37	(0.35,0.378]	chr2	91442	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	KCMF1	ENSG00000176407.18	ENST00000409785.9:ENST00000453448.1	protein_coding	protein_coding	protein_coding	protein_coding	2	55	2	2.79643	3.02596	3.25549	0.013543	0.00363602	0.101363	0.0535085
chr2	159722635	159722735	899586	0	+	0.33	(0.32,0.35]	chr2	99520	65	INTRON	INTRON	MARCHF7	ENSG00000136536.15	ENST00000539065.5:ENST00000259050.8:ENST00000409175.6:ENST00000421037.1:ENST00000473749.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	123	2	3.02374	3.025725	3.02771	0.00133935	2.14325e-4	0.0335551	0.0128514
chr8	123102752	123102849	3850541	0	+	0.268041	[0,0.28]	chr8	354700	6	UTR3	UTR3:EXON_MRNA:INTRON	TBC1D31	ENSG00000156787.17	ENST00000519418.5:ENST00000287380.6:ENST00000522420.5:ENST00000327098.9:ENST00000521676.5:ENST00000524307.5:ENST00000521914.1:ENST00000518805.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	95	2	3.01287	3.025685	3.0385	0.0115634	0.00116412	0.0889104	0.0314524
chr9	129089388	129089484	4208979	0	+	0.604167	(0.57,1]	chr9	385587	5	UTR3	UTR3:EXON_MRNA	DOLPP1	ENSG00000167130.18	ENST00000372546.9:ENST00000406974.7:ENST00000327812.12:ENST00000412363.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	23	2	1.67986	3.02561	4.37136	0.0496395	0.00345135	0.174685	0.0517761
chr1	120280234	120280333	202936	0	+	0.474747	(0.44,0.476]	chr1	22366	18	INTRON	INTRON	ENSG00000274642	ENSG00000274642.1	ENST00000612320.1	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	2	49	2	3.02366	3.025585	3.02751	0.00715968	0.00603307	0.0723634	0.0700813
chr12	122550636	122550727	5240829	0	+	0.472527	(0.44,0.476]	chr12	497649	4	INTRON	INTRON	KNTC1	ENSG00000184445.12	ENST00000450485.6:ENST00000333479.12	protein_coding	protein_coding	protein_coding	protein_coding	2	49	2	3.02366	3.025585	3.02751	0.00715968	0.00603307	0.0723634	0.0700813
chr3	37309924	37310024	1396431	0	+	0.31	(0.28,0.32]	chr3	146385	72	INTRON	INTRON	GOLGA4	ENSG00000144674.17	ENST00000435830.6:ENST00000444882.5:ENST00000356847.8:ENST00000450863.6:ENST00000361924.7:ENST00000429018.5:ENST00000437131.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	84	2	2.96187	3.0254849999999998	3.0891	0.0114995	7.51507e-4	0.0889104	0.0251578
chr19	54461027	54461126	7099465	0	+	0.525253	(0.515,0.57]	chr19	712032	2	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	LENG8	ENSG00000167615.17	ENST00000616932.4:ENST00000326764.10:ENST00000376514.6:ENST00000610347.1:ENST00000421200.1	protein_coding	protein_coding	protein_coding	protein_coding	43	714	2	2.83385	3.0253699999999997	3.21689	7.82026e-7	1.05803e-8	5.43864e-4	3.51053e-5
chr2	97255592	97255691	832329	0	+	0.313131	(0.28,0.32]	chr2	93269	36	INTRON	INTRON	ANKRD36	ENSG00000135976.21	ENST00000420699.9	protein_coding	protein_coding	protein_coding	protein_coding	3	85	2	2.74175	3.02534	3.30893	0.00457205	0.00260504	0.0595107	0.0470772
chr6	20535594	20535694	2828391	0	+	0.42	(0.408,0.44]	chr6	265629	2	SS5_PROX	SS5_PROX:INTRON	CDKAL1	ENSG00000145996.11	ENST00000274695.8:ENST00000613575.4	protein_coding	protein_coding	protein_coding	protein_coding	3	66	2	2.60048	3.025335	3.45019	0.00484324	0.00152664	0.0640618	0.0353936
chr12	53470852	53470947	5143090	0	+	0.305263	(0.28,0.32]	chr12	485442	17	INTRON	INTRON	PCBP2	ENSG00000197111.16	ENST00000546463.6:ENST00000437231.5:ENST00000447282.5:ENST00000359282.9:ENST00000549863.5:ENST00000359462.9:ENST00000552296.6:ENST00000552819.5:ENST00000455667.7:ENST00000439930.7:ENST00000548933.5:ENST00000562264.5:ENST00000550585.5:ENST00000553064.6:ENST00000547859.2:ENST00000547048.5:ENST00000550733.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	83	2	2.33381	3.024985	3.71616	0.0174951	4.76221e-4	0.104863	0.0197443
chr1	156312621	156312721	566446	0	-	0.37	(0.35,0.378]	chr1	67980	4	SS3_PROX	SS3_PROX:INTRON	CCT3	ENSG00000163468.15	ENST00000295688.8:ENST00000368258.7:ENST00000368259.6:ENST00000368261.7:ENST00000368262.7:ENST00000472765.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	53	2	2.94111	3.02487	3.10863	0.0104563	0.00470896	0.0855102	0.0631419
chr3	73005439	73005538	1452040	0	+	0.363636	(0.35,0.378]	chr3	152951	69	INTRON	INTRON	PPP4R2	ENSG00000163605.15	ENST00000482242.5:ENST00000356692.10:ENST00000470976.1:ENST00000488810.5:ENST00000495566.1:ENST00000476505.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	53	2	2.94111	3.02487	3.10863	0.0104563	0.00470896	0.0855102	0.0631419
chr3	48525991	48526072	1688597	0	-	0.320988	(0.32,0.35]	chr3	172529	5	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	PFKFB4	ENSG00000114268.12	ENST00000232375.8:ENST00000490115.5:ENST00000383734.6:ENST00000416568.5:ENST00000417753.5:ENST00000445633.5:ENST00000478516.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	104	2	2.35389	3.0248549999999996	3.69582	0.00241005	7.3931e-4	0.0453511	0.0249744
chrX	119577466	119577566	7713452	0	+	0.38	(0.378,0.408]	chrX	789241	4	SS5_PROX	SS5_PROX:INTRON	UBE2A	ENSG00000077721.17	ENST00000696539.1:ENST00000696533.1:ENST00000696534.1:ENST00000346330.6:ENST00000625938.2:ENST00000631185.2:ENST00000630695.2:ENST00000371558.7:ENST00000629303.2:ENST00000628549.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	82	2	2.31181	3.02482	3.73783	0.00548372	4.8181e-4	0.0671431	0.0203411
chr16	67031769	67031868	6365568	0	+	0.494949	(0.476,0.515]	chr16	611409	12	INTRON	INTRON	CBFB	ENSG00000067955.15	ENST00000651988.1:ENST00000652360.1:ENST00000561924.6:ENST00000290858.11:ENST00000412916.7:ENST00000564034.6:ENST00000650873.1:ENST00000563939.3:ENST00000565389.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	49	2	2.94692	3.02478	3.10264	0.00794331	0.00543163	0.0797304	0.0645052
chr19	2202399	2202499	6996564	0	+	0.52	(0.515,0.57]	chr19	693468	3	SS3_PROX	SS3_PROX:INTRON	DOT1L	ENSG00000104885.19	ENST00000398665.8:ENST00000686010.1	protein_coding	protein_coding	protein_coding	protein_coding	4	68	2	2.24433	3.0247650000000004	3.8052	0.00725078	1.67082e-4	0.072984	0.0111796
chr7	148817585	148817682	3670080	0	-	0.350515	(0.35,0.378]	chr7	340569	3	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	EZH2	ENSG00000106462.12	ENST00000683292.1:ENST00000320356.7:ENST00000492143.5:ENST00000478654.5:ENST00000350995.6:ENST00000460911.5:ENST00000683744.1:ENST00000684510.1:ENST00000682317.1:ENST00000682263.1:ENST00000684300.1:ENST00000476773.5:ENST00000483967.5:ENST00000684436.1:ENST00000498186.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	162	2	2.76257	3.02466	3.28675	3.6403e-4	7.18859e-5	0.0176829	0.00705584
chr11	47483717	47483802	4949690	0	-	0.329412	(0.32,0.35]	chr11	464179	2	SS3_PROX	SS3_PROX:INTRON	CELF1	ENSG00000149187.19	ENST00000310513.10:ENST00000687097.1:ENST00000395290.6:ENST00000358597.7:ENST00000395292.6:ENST00000361904.7:ENST00000531165.5:ENST00000532048.5:ENST00000422993.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	58	2	2.51061	3.0245749999999996	3.53854	0.0364463	9.09596e-4	0.138959	0.0277043
chr13	52459299	52459398	5504091	0	+	0.383838	(0.378,0.408]	chr13	526649	23	INTRON	INTRON	CKAP2	ENSG00000136108.15	ENST00000468284.1:ENST00000378034.7:ENST00000378037.9:ENST00000258607.10:ENST00000490903.5:ENST00000480747.1	protein_coding	protein_coding	protein_coding	protein_coding	3	70	2	2.11194	3.0245300000000004	3.93712	0.0292534	1.09377e-4	0.128055	0.00884858
chr19	5708680	5708773	7124594	0	-	0.462366	(0.44,0.476]	chr19	717143	4	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	LONP1	ENSG00000196365.12	ENST00000360614.8:ENST00000587552.5:ENST00000540670.6:ENST00000593119.5:ENST00000585374.5:ENST00000590558.5:ENST00000590729.5:ENST00000587365.1:ENST00000591321.1:ENST00000586617.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	90	2	2.50256	3.0244400000000002	3.54632	0.00102082	9.9951e-4	0.0294041	0.0288906
chr6	158630019	158630119	3022311	0	+	0.39	(0.378,0.408]	chr6	281874	2	SS5_PROX	SS5_PROX:INTRON	TMEM181	ENSG00000146433.10	ENST00000367090.4:ENST00000684151.1	protein_coding	protein_coding	protein_coding	protein_coding	3	68	2	2.94613	3.024435	3.10274	0.00586642	0.00112461	0.0668095	0.0308177
chr1	6656672	6656771	368615	0	-	0.383838	(0.378,0.408]	chr1	43337	20	INTRON	INTRON	DNAJC11	ENSG00000007923.17	ENST00000451196.5:ENST00000377577.10:ENST00000690452.1:ENST00000685129.1:ENST00000472414.2:ENST00000688524.1:ENST00000686243.1:ENST00000690062.1:ENST00000689474.1:ENST00000294401.11:ENST00000426784.1:ENST00000473993.5:ENST00000685485.1:ENST00000691444.1:ENST00000688162.1:ENST00000469318.5:ENST00000485073.5:ENST00000460594.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	25	2	2.2259	3.02442	3.82294	0.0662381	0.044228	0.181924	0.162255
chr21	28988912	28989010	7436658	0	-	0.408163	(0.378,0.408]	chr21	758446	16	INTRON	INTRON	LTN1	ENSG00000198862.14	ENST00000614971.4:ENST00000389194.7:ENST00000361371.10:ENST00000389195.7	protein_coding	protein_coding	protein_coding	protein_coding	1	25	2	2.2259	3.02442	3.82294	0.0662381	0.044228	0.181924	0.162255
chr3	47439400	47439499	1682490	0	-	0.393939	(0.378,0.408]	chr3	171868	39	INTRON	INTRON	SCAP	ENSG00000114650.21	ENST00000265565.10:ENST00000441517.6:ENST00000320017.10:ENST00000648151.1:ENST00000416208.5:ENST00000416847.5:ENST00000495603.2:ENST00000420588.5:ENST00000485967.1:ENST00000448217.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	25	2	2.2259	3.02442	3.82294	0.0662381	0.044228	0.181924	0.162255
chr4	150400757	150400857	2265564	0	-	0.39	(0.378,0.408]	chr4	220639	465	INTRON	INTRON	LRBA	ENSG00000198589.14	ENST00000357115.9:ENST00000651943.2:ENST00000510413.5:ENST00000503716.5:ENST00000509835.5:ENST00000648823.1:ENST00000648626.1:ENST00000651695.1:ENST00000648878.1:ENST00000651035.1:ENST00000507224.5:ENST00000649874.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	25	2	2.2259	3.02442	3.82294	0.0662381	0.044228	0.181924	0.162255
chr7	150320766	150320866	3673629	0	-	0.38	(0.378,0.408]	chr7	340911	179	INTRON	INTRON	ACTR3C	ENSG00000106526.11	ENST00000478393.5:ENST00000683684.1:ENST00000477871.1:ENST00000477367.1	protein_coding	protein_coding	protein_coding	protein_coding	1	25	2	2.2259	3.02442	3.82294	0.0662381	0.044228	0.181924	0.162255
chr13	50263351	50263451	5492800	0	+	0.5	(0.476,0.515]	chr13	526063	146	INTRON	INTRON	DLEU1	ENSG00000176124.15	ENST00000467721.5:ENST00000468522.5:ENST00000490577.5:ENST00000491341.5:ENST00000491615.5:ENST00000463474.7:ENST00000468168.5:ENST00000476738.5:ENST00000461527.7:ENST00000486895.5:ENST00000485007.5:ENST00000475913.5:ENST00000484529.5:ENST00000473075.3:ENST00000483444.5	lncRNA	lncRNA	lncRNA	lncRNA	4	87	2	2.93859	3.0244	3.11021	0.00143107	5.02606e-4	0.0340925	0.020217099999999998
chr16	23860836	23860936	6324007	0	+	0.37	(0.35,0.378]	chr16	605693	231	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000498058.1:ENST00000645517.1:ENST00000498739.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	115	2	2.56914	3.024285	3.47943	0.00254279	7.9007e-5	0.0448135	0.00739361
chr15	28288187	28288287	6123723	0	-	0.42	(0.408,0.44]	chr15	583388	75	INTRON	INTRON	HERC2	ENSG00000128731.18	ENST00000261609.13:ENST00000564734.5:ENST00000564383.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	37	2	1.81759	3.024275	4.23096	0.0316273	0.0278028	0.144405	0.123904
chr20	21317812	21317912	7248282	0	+	0.41	(0.408,0.44]	chr20	735885	140	INTRON	INTRON	XRN2	ENSG00000088930.8	ENST00000377191.5	protein_coding	protein_coding	protein_coding	protein_coding	3	37	2	1.81759	3.024275	4.23096	0.0316273	0.0278028	0.144405	0.123904
chr9	125006358	125006457	4350602	0	-	0.343434	(0.32,0.35]	chr9	399484	24	INTRON	INTRON	SCAI	ENSG00000173611.18	ENST00000336505.11:ENST00000373549.8:ENST00000477186.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	123	2	2.99898	3.02424	3.0495	0.00148392	1.90742e-4	0.034977	0.01201
chr1	203802819	203802917	296752	0	+	0.387755	(0.378,0.408]	chr1	34131	25	UTR3	UTR3:UTR5:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	ZC3H11A:ZBED6	ENSG00000058673.17:ENSG00000257315.3	ENST00000367210.3:ENST00000453771.5:ENST00000432282.5:ENST00000638800.1:ENST00000367214.5:ENST00000639812.1:ENST00000367212.7:ENST00000332127.8:ENST00000550078.2:ENST00000495527.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	14	245	2	2.46776	3.0242	3.58064	6.29593e-5	1.38197e-5	0.00658818	0.00295118
chr16	24545364	24545463	6327713	0	+	0.313131	(0.28,0.32]	chr16	605824	42	INTRON	INTRON	RBBP6	ENSG00000122257.20	ENST00000564314.5:ENST00000567686.5:ENST00000568015.5:ENST00000319715.10:ENST00000452655.6:ENST00000381039.7:ENST00000646282.1:ENST00000348022.6	protein_coding	protein_coding	protein_coding	protein_coding	2	61	2	2.87382	3.0241749999999996	3.17453	0.014868	0.00429297	0.0989021	0.0599065
chr5	38953191	38953275	2604400	0	-	0.297619	(0.28,0.32]	chr5	247756	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RICTOR	ENSG00000164327.13	ENST00000357387.8:ENST00000511516.5:ENST00000296782.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	61	2	2.87382	3.0241749999999996	3.17453	0.014868	0.00429297	0.0989021	0.0599065
chr10	125083395	125083495	4713563	0	-	0.63	(0.57,1]	chr10	434897	439	INTRON	INTRON	CTBP2	ENSG00000175029.17	ENST00000337195.9:ENST00000411419.6:ENST00000494626.6:ENST00000531469.5:ENST00000460976.5:ENST00000476817.1:ENST00000530884.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	27	2	1.37384	3.0241350000000002	4.67443	0.0766386	8.07515e-4	0.196164	0.0258804
chr7	92211842	92211939	3569797	0	-	0.453608	(0.44,0.476]	chr7	332517	4	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	ENSG00000289027:KRIT1	ENSG00000289027.1:ENSG00000001631.17	ENST00000692281.1:ENST00000693096.1:ENST00000688180.1:ENST00000394507.5:ENST00000692807.1:ENST00000340022.6:ENST00000394505.7:ENST00000486261.5:ENST00000458177.7:ENST00000684808.1:ENST00000444960.6:ENST00000691239.1:ENST00000686094.1:ENST00000686527.1:ENST00000690529.1:ENST00000689411.1:ENST00000688665.1:ENST00000692157.1:ENST00000686043.1:ENST00000690720.1:ENST00000692690.1:ENST00000690908.1:ENST00000691827.1:ENST00000690751.1:ENST00000425073.2:ENST00000687876.1:ENST00000690904.1:ENST00000688781.1:ENST00000686785.1:ENST00000689556.1:ENST00000688314.1:ENST00000688404.1:ENST00000690292.1:ENST00000687135.1:ENST00000689082.1:ENST00000686149.1:ENST00000475770.6:ENST00000454017.6:ENST00000692361.1:ENST00000689778.1:ENST00000686619.1:ENST00000688766.1:ENST00000688580.1:ENST00000693563.1:ENST00000685431.1:ENST00000689539.1:ENST00000412043.6:ENST00000394503.6:ENST00000433016.6:ENST00000445516.2:ENST00000686233.1:ENST00000692205.1:ENST00000687627.1:ENST00000688196.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	65	2	2.73781	3.0239599999999998	3.31011	0.00276493	0.00259023	0.04867	0.0452934
chr6	124985216	124985315	2951701	0	+	0.282828	(0.28,0.32]	chr6	277678	13	INTRON	INTRON	RNF217	ENSG00000146373.17	ENST00000521654.7:ENST00000560949.5:ENST00000519565.5:ENST00000454842.2:ENST00000368414.6:ENST00000519799.5:ENST00000359704.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	83	2	3.00291	3.02388	3.04485	0.00894006	0.00110829	0.0799922	0.0305035
chr6	135036381	135036469	3225284	0	-	0.272727	[0,0.28]	chr6	299842	7	UTR3	UTR3:EXON_MRNA:INTRON	HBS1L	ENSG00000112339.15	ENST00000367837.10:ENST00000415177.6:ENST00000367826.6:ENST00000533274.5:ENST00000526100.5:ENST00000314674.7:ENST00000524715.5:ENST00000529882.5:ENST00000367822.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	114	2	2.28786	3.0238699999999996	3.75988	0.00782185	9.5295e-4	0.0788675	0.0282335
chr6	16131643	16131742	2825798	0	+	0.282828	(0.28,0.32]	chr6	265309	5	INTRON	INTRON	MYLIP	ENSG00000007944.15	ENST00000356840.8:ENST00000349606.4	protein_coding	protein_coding	protein_coding	protein_coding	3	82	2	2.77917	3.023835	3.2685	0.00432734	0.00285651	0.0579331	0.0494641
chr5	131670822	131670913	2719468	0	-	0.340659	(0.32,0.35]	chr5	255652	2	SS3_PROX	SS3_PROX:INTRON	FNIP1	ENSG00000217128.13	ENST00000510461.6:ENST00000307954.12:ENST00000307968.11	protein_coding	protein_coding	protein_coding	protein_coding	2	57	2	2.6321	3.0238199999999997	3.41554	0.0268	0.00153152	0.123349	0.0361484
chr7	72887144	72887243	3329867	0	+	0.343434	(0.32,0.35]	chr7	309555	69	INTRON	INTRON	POM121	ENSG00000196313.13	ENST00000627934.3:ENST00000395270.5	protein_coding	protein_coding	protein_coding	protein_coding	2	57	2	2.6321	3.0238199999999997	3.41554	0.0268	0.00153152	0.123349	0.0361484
chr20	32388129	32388229	7256124	0	+	0.38	(0.378,0.408]	chr20	737076	157	INTRON	INTRON	ASXL1	ENSG00000171456.21	ENST00000651418.1:ENST00000375687.10:ENST00000613218.4:ENST00000644587.1:ENST00000620121.4:ENST00000646985.1:ENST00000643168.1:ENST00000306058.9:ENST00000645688.1:ENST00000470145.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	51	2	2.66785	3.023775	3.3797	0.0224639	0.00154501	0.11692	0.0362716
chr4	6935576	6935676	1922877	0	+	0.4	(0.378,0.408]	chr4	193062	111	INTRON	INTRON	TBC1D14	ENSG00000132405.19	ENST00000448507.5:ENST00000409757.9	protein_coding	protein_coding	protein_coding	protein_coding	2	51	2	2.66785	3.023775	3.3797	0.0224639	0.00154501	0.11692	0.0362716
chr2	32644576	32644675	733668	0	+	0.454545	(0.44,0.476]	chr2	84737	38	INTRON	INTRON	TTC27	ENSG00000018699.13	ENST00000317907.9:ENST00000647819.1:ENST00000454690.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	66	2	2.29126	3.02367	3.75608	0.0165638	2.6487e-4	0.102621	0.0144071
chr7	123732919	123733019	3632500	0	-	0.3	(0.28,0.32]	chr7	337581	233	INTRON	INTRON	WASL	ENSG00000106299.8	ENST00000223023.5	protein_coding	protein_coding	protein_coding	protein_coding	7	140	2	2.33607	3.02357	3.71107	0.00104057	8.39788e-4	0.0296324	0.0266487
chr2	232784359	232784458	1038136	0	+	0.393939	(0.378,0.408]	chr2	110722	17	INTRON	INTRON	GIGYF2	ENSG00000204120.16	ENST00000629305.2:ENST00000409480.5:ENST00000373563.9:ENST00000409547.5:ENST00000423659.5:ENST00000409196.7:ENST00000409451.7:ENST00000440945.5:ENST00000424038.2:ENST00000677591.1:ENST00000678230.1:ENST00000678339.1:ENST00000677450.1:ENST00000678466.1:ENST00000678885.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	69	2	2.21238	3.023425	3.83447	0.0218124	1.86403e-4	0.11491	0.0119078
chr2	10672278	10672376	1066230	0	-	0.346939	(0.32,0.35]	chr2	113776	7	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	NOL10	ENSG00000115761.17	ENST00000695464.1:ENST00000695470.1:ENST00000695467.1:ENST00000695468.1:ENST00000695469.1:ENST00000381685.10:ENST00000695471.1:ENST00000345985.7:ENST00000538384.5:ENST00000695472.1:ENST00000695473.1:ENST00000695475.1:ENST00000695476.1:ENST00000695477.1:ENST00000695478.1:ENST00000695479.1:ENST00000695480.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	57	2	2.96746	3.023405	3.07935	0.00815799	0.00724137	0.0810802	0.0729826
chr12	109577125	109577221	5223593	0	+	0.40625	(0.378,0.408]	chr12	494844	6	INTRON	INTRON	MVK	ENSG00000110921.14	ENST00000539335.5:ENST00000546277.5:ENST00000535044.1:ENST00000447878.6:ENST00000228510.8:ENST00000539696.5:ENST00000537237.5:ENST00000545774.5:ENST00000392727.7:ENST00000539575.4:ENST00000625889.2:ENST00000629016.2:ENST00000639206.1:ENST00000636996.1:ENST00000636529.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	51	2	2.9917	3.02336	3.05502	0.00689519	0.0068789	0.0749442	0.0717484
chr8	22100228	22100319	3711950	0	+	0.406593	(0.378,0.408]	chr8	344596	2	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	FHIP2B	ENSG00000158863.22	ENST00000289921.8:ENST00000450006.7:ENST00000462914.3:ENST00000491733.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	51	2	2.9917	3.02336	3.05502	0.00689519	0.0068789	0.0749442	0.0717484
chr10	50343526	50343623	4617879	0	-	0.453608	(0.44,0.476]	chr10	425417	1	CDS	CDS:EXON_MRNA	SGMS1	ENSG00000198964.14	ENST00000429490.5:ENST00000361781.7:ENST00000361543.3:ENST00000626236.2:ENST00000619438.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	239	2	2.86653	3.023345	3.18016	1.74051e-5	1.64415e-5	0.00324999	0.00317376
chr13	50246205	50246305	5492628	0	+	0.37	(0.35,0.378]	chr13	526057	215	INTRON	INTRON	DLEU1	ENSG00000176124.15	ENST00000467721.5:ENST00000468522.5:ENST00000490577.5:ENST00000491341.5:ENST00000491615.5:ENST00000463474.7:ENST00000468168.5:ENST00000476738.5:ENST00000461527.7:ENST00000486895.5:ENST00000485007.5:ENST00000475913.5:ENST00000484529.5:ENST00000473075.3:ENST00000483444.5	lncRNA	lncRNA	lncRNA	lncRNA	1	26	2	2.24535	3.02332	3.80129	0.0647516	0.0504034	0.179192	0.17488
chr15	51074166	51074266	6024516	0	+	0.37	(0.35,0.378]	chr15	574193	361	INTRON	INTRON	MIR4713HG	ENSG00000259240.1	ENST00000559909.1	lncRNA	lncRNA	lncRNA	lncRNA	1	26	2	2.24535	3.02332	3.80129	0.0647516	0.0504034	0.179192	0.17488
chr15	81804018	81804118	6243342	0	-	0.36	(0.35,0.378]	chr15	595859	56	INTRON	INTRON	ENSG00000259692	ENSG00000259692.6	ENST00000559428.2:ENST00000560054.6:ENST00000560097.1	lncRNA	lncRNA	lncRNA	lncRNA	1	26	2	2.24535	3.02332	3.80129	0.0647516	0.0504034	0.179192	0.17488
chr3	93957611	93957710	1754028	0	-	0.353535	(0.35,0.378]	chr3	177829	285	INTRON	INTRON	PROS1	ENSG00000184500.16	ENST00000394236.9:ENST00000648381.1:ENST00000648853.1:ENST00000650591.1:ENST00000348974.5:ENST00000647936.1:ENST00000407433.6:ENST00000649103.1:ENST00000472684.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	26	2	2.24535	3.02332	3.80129	0.0647516	0.0504034	0.179192	0.17488
chr4	521466	521559	1907581	0	+	0.354839	(0.35,0.378]	chr4	191143	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PIGG	ENSG00000174227.16	ENST00000453061.7:ENST00000504187.5:ENST00000310340.9:ENST00000504346.5:ENST00000503111.5:ENST00000383028.8:ENST00000506402.5:ENST00000509768.1:ENST00000506898.5:ENST00000507493.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	26	2	2.24535	3.02332	3.80129	0.0647516	0.0504034	0.179192	0.17488
chr7	22858158	22858256	3288725	0	+	0.367347	(0.35,0.378]	chr7	305434	12	EXON_LNCRNA	EXON_LNCRNA:SS3_PROX:INTRON	SNHG26	ENSG00000228649.10	ENST00000415611.8:ENST00000667557.1:ENST00000422542.4:ENST00000656301.1:ENST00000661147.1:ENST00000656687.2:ENST00000662021.1:ENST00000691516.1:ENST00000685098.1:ENST00000689892.1:ENST00000663057.1:ENST00000657608.1:ENST00000688000.1:ENST00000690219.1:ENST00000658124.1:ENST00000661582.1	lncRNA	lncRNA	lncRNA	lncRNA	1	26	2	2.24535	3.02332	3.80129	0.0647516	0.0504034	0.179192	0.17488
chr7	101878630	101878730	3366975	0	+	0.38	(0.378,0.408]	chr7	315215	593	INTRON	INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000497815.5:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000607092.1:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000558469.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	69	2	2.66643	3.023065	3.3797	0.00470023	0.00154501	0.0600108	0.0362716
chr16	68100996	68101096	6370380	0	+	0.29	(0.28,0.32]	chr16	612188	114	INTRON	INTRON	ENSG00000261864:NFATC3	ENSG00000261864.1:ENSG00000072736.19	ENST00000548144.1:ENST00000563319.5:ENST00000569766.5:ENST00000553077.5:ENST00000566301.5:ENST00000549350.5:ENST00000566893.5:ENST00000575270.5:ENST00000561714.5:ENST00000346183.8:ENST00000568466.6:ENST00000539828.6:ENST00000562171.1:ENST00000349223.9:ENST00000329524.8:ENST00000379165.8:ENST00000562926.5:ENST00000570212.5:ENST00000563796.5:ENST00000567152.5:ENST00000563288.5:ENST00000535127.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA:processed_transcript	5	56	2	1.45717	3.0229600000000003	4.58875	0.0472947	0.0230574	0.16913	0.118056
chrX	24074777	24074873	7630943	0	+	0.385417	(0.378,0.408]	chrX	781493	10	INTRON	INTRON	EIF2S3	ENSG00000130741.11	ENST00000253039.9:ENST00000457332.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	208	2	2.86425	3.02294	3.18163	4.51128e-5	3.34442e-5	0.005802	0.00463632
chr7	2368685	2368780	3269772	0	+	0.484211	(0.476,0.515]	chr7	303838	13	INTRON	INTRON	EIF3B	ENSG00000106263.19	ENST00000360876.9:ENST00000397011.2:ENST00000466199.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	12	228	2	2.76702	3.022785	3.27855	2.18389e-5	1.9946e-5	0.00364027	0.00361357
chr3	10092827	10092918	1362893	0	+	0.483516	(0.476,0.515]	chr3	143625	2	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	FANCD2	ENSG00000144554.13	ENST00000287647.7:ENST00000676013.1:ENST00000675286.1:ENST00000419585.5:ENST00000681997.1:ENST00000683263.1:ENST00000421731.5:ENST00000683933.1:ENST00000683312.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	106	2	2.86926	3.0227700000000004	3.17628	5.40463e-4	3.6008e-4	0.0215026	0.0169207
chr1	235488867	235488967	664300	0	-	0.46	(0.44,0.476]	chr1	78625	3	SS5_PROX	SS5_PROX:INTRON	B3GALNT2	ENSG00000162885.14	ENST00000366600.8:ENST00000675193.1:ENST00000676288.1:ENST00000675555.1:ENST00000612859.4:ENST00000313984.3:ENST00000494378.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	65	2	2.69297	3.02262	3.35227	0.00333494	0.0022005699999999998	0.0528877	0.0417893
chr4	17822182	17822282	1927171	0	+	0.42	(0.408,0.44]	chr4	193739	37	INTRON	INTRON	NCAPG	ENSG00000109805.10	ENST00000251496.7:ENST00000514176.5:ENST00000509719.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	49	2	2.84077	3.02257	3.20437	0.0132196	0.00306596	0.0940535	0.0509893
chr4	78865056	78865156	1982287	0	+	0.41	(0.408,0.44]	chr4	198523	1	SS3_PROX	SS3_PROX:INTRON	BMP2K	ENSG00000138756.19	ENST00000389010.7:ENST00000502613.3:ENST00000502871.5:ENST00000505725.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	49	2	2.84077	3.02257	3.20437	0.0132196	0.00306596	0.0940535	0.0509893
chr1	769207	769301	357665	0	-	0.414894	(0.408,0.44]	chr1	41201	2	SS5_PROX	SS5_PROX:INTRON	ENSG00000230021:ENSG00000228327	ENSG00000230021.10:ENSG00000228327.4	ENST00000634337.2:ENST00000635509.2:ENST00000506640.2:ENST00000428504.2	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene:transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	2	49	2	2.89795	3.0225049999999998	3.14706	0.0110735	0.00382411	0.0873897	0.0562562
chr2	32217025	32217125	730306	0	+	0.44	(0.408,0.44]	chr2	84226	71	INTRON	INTRON	SLC30A6	ENSG00000152683.14	ENST00000357055.7:ENST00000435660.5:ENST00000282587.9:ENST00000449777.5:ENST00000454324.5:ENST00000379343.6:ENST00000406369.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	49	2	2.89795	3.0225049999999998	3.14706	0.0110735	0.00382411	0.0873897	0.0562562
chr2	86728278	86728378	823557	0	+	0.42	(0.408,0.44]	chr2	92028	71	INTRON	INTRON	RMND5A	ENSG00000153561.13	ENST00000283632.5	protein_coding	protein_coding	protein_coding	protein_coding	2	49	2	2.89795	3.0225049999999998	3.14706	0.0110735	0.00382411	0.0873897	0.0562562
chr4	150703094	150703194	2268606	0	-	0.44	(0.408,0.44]	chr4	220726	190	INTRON	INTRON	LRBA	ENSG00000198589.14	ENST00000357115.9:ENST00000651943.2:ENST00000510413.5:ENST00000509835.5:ENST00000651695.1:ENST00000651035.1:ENST00000507224.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	49	2	2.89795	3.0225049999999998	3.14706	0.0110735	0.00382411	0.0873897	0.0562562
chr5	177329269	177329369	2777375	0	-	0.44	(0.408,0.44]	chr5	261667	111	INTRON	INTRON	LMAN2	ENSG00000169223.16	ENST00000694903.1	protein_coding	processed_transcript	protein_coding	processed_transcript	2	49	2	2.89795	3.0225049999999998	3.14706	0.0110735	0.00382411	0.0873897	0.0562562
chr2	127513216	127513316	1224610	0	-	0.32	(0.28,0.32]	chr2	130387	61	INTRON	INTRON	IWS1	ENSG00000163166.15	ENST00000295321.9:ENST00000495369.1:ENST00000409725.1:ENST00000486662.1:ENST00000479083.1:ENST00000478949.1:ENST00000460511.5:ENST00000483889.5:ENST00000436740.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	35	2	1.90263	3.0223850000000003	4.14214	0.0579756	0.0503272	0.17488	0.167723
chr4	39722146	39722246	1953232	0	+	0.29	(0.28,0.32]	chr4	195630	234	INTRON	INTRON	UBE2K	ENSG00000078140.14	ENST00000510934.5:ENST00000261427.10:ENST00000438068.6:ENST00000513231.5:ENST00000503368.5:ENST00000445950.2:ENST00000510719.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	35	2	1.90263	3.0223850000000003	4.14214	0.0579756	0.0503272	0.17488	0.167723
chr6	85515225	85515322	3150105	0	-	0.309278	(0.28,0.32]	chr6	293687	2	INTRON	INTRON	ENSG00000271793:SNX14	ENSG00000271793.2:ENSG00000135317.14	ENST00000682083.1:ENST00000683074.1:ENST00000681965.1:ENST00000682171.1:ENST00000684150.1:ENST00000683785.1:ENST00000682497.1:ENST00000684647.1:ENST00000683643.1:ENST00000682023.1:ENST00000682022.1:ENST00000683542.1:ENST00000683126.1:ENST00000683857.1:ENST00000683898.1:ENST00000682854.1:ENST00000682491.1:ENST00000682174.1:ENST00000684239.1:ENST00000682939.1:ENST00000684570.1:ENST00000682057.1:ENST00000682878.1:ENST00000683880.1:ENST00000684422.1:ENST00000682504.1:ENST00000683726.1:ENST00000684680.1:ENST00000683196.1:ENST00000683458.1:ENST00000683803.1:ENST00000684281.1:ENST00000682991.1:ENST00000683754.1:ENST00000683481.1:ENST00000682455.1:ENST00000682034.1:ENST00000684451.1:ENST00000683583.1:ENST00000682776.1:ENST00000683873.1:ENST00000683878.1:ENST00000683195.1:ENST00000682995.1:ENST00000682374.1:ENST00000683698.1:ENST00000682454.1:ENST00000682694.1:ENST00000682412.1:ENST00000514801.2:ENST00000682926.1:ENST00000682682.1:ENST00000418862.2:ENST00000346348.7:ENST00000314673.8:ENST00000682633.1:ENST00000683085.1:ENST00000682688.1:ENST00000684319.1:ENST00000683577.1:ENST00000682709.1:ENST00000684299.1:ENST00000682133.1:ENST00000682594.1:ENST00000683473.1:ENST00000682106.1:ENST00000683364.1:ENST00000683436.1:ENST00000684220.1:ENST00000683909.1:ENST00000684118.1:ENST00000681981.1:ENST00000682738.1:ENST00000509338.6:ENST00000684717.1:ENST00000682660.1:ENST00000683073.1:ENST00000515216.6:ENST00000684581.1:ENST00000683763.1:ENST00000683479.1:ENST00000682464.1:ENST00000684108.1:ENST00000682514.1:ENST00000684017.1:ENST00000684273.1:ENST00000513865.5:ENST00000505648.5:ENST00000508980.5:ENST00000369627.6:ENST00000503491.5:ENST00000508658.6:ENST00000683097.1:ENST00000683541.1:ENST00000683759.1:ENST00000369635.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	35	2	1.90263	3.0223850000000003	4.14214	0.0579756	0.0503272	0.17488	0.167723
chr9	19302988	19303086	4105580	0	+	0.285714	(0.28,0.32]	chr9	373944	23	INTRON	INTRON	DENND4C	ENSG00000137145.21	ENST00000602925.5:ENST00000434457.7:ENST00000380437.8:ENST00000494124.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	35	2	1.90263	3.0223850000000003	4.14214	0.0579756	0.0503272	0.17488	0.167723
chr21	34105171	34105270	7401411	0	+	0.434343	(0.408,0.44]	chr21	753974	80	UTR3	UTR3:EXON_MRNA:INTRON	MRPS6:SLC5A3	ENSG00000243927.6:ENSG00000198743.7	ENST00000488492.5:ENST00000477091.5:ENST00000399312.3:ENST00000381151.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	20	324	2	2.3276	3.022275	3.71695	5.763e-5	1.41807e-6	0.00620725	7.75185e-4
chr18	2999540	2999639	6944964	0	-	0.464646	(0.44,0.476]	chr18	686840	168	INTRON	INTRON	LPIN2	ENSG00000101577.10	ENST00000261596.8:ENST00000677752.1	protein_coding	protein_coding	protein_coding	protein_coding	4	79	2	2.28847	3.0222749999999996	3.75608	0.00692113	2.6487e-4	0.0718189	0.0144071
chr9	137659916	137660016	4223885	0	+	0.31	(0.28,0.32]	chr9	388170	85	INTRON	INTRON	EHMT1	ENSG00000181090.21	ENST00000462484.5:ENST00000371394.6:ENST00000630754.2:ENST00000460843.6:ENST00000626216.2:ENST00000629335.2:ENST00000637335.1:ENST00000636376.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	82	2	2.84671	3.0222249999999997	3.19774	0.00548491	0.00216662	0.0648867	0.0434015
chr11	119019424	119019514	4874177	0	+	0.611111	(0.57,1]	chr11	455427	1	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	TRAPPC4	ENSG00000196655.12	ENST00000527680.1:ENST00000533058.5:ENST00000533632.6:ENST00000359005.8:ENST00000531290.5:ENST00000434101.6:ENST00000525303.5:ENST00000528230.5:ENST00000447216.2:ENST00000525079.5:ENST00000533012.1:ENST00000533149.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	36	2	2.95123	3.0221799999999996	3.09313	0.00369015	8.39007e-4	0.0535094	0.0263691
chr2	159764225	159764325	900011	0	+	0.42	(0.408,0.44]	chr2	99571	2	SS3_PROX	SS3_PROX:INTRON	MARCHF7	ENSG00000136536.15	ENST00000539065.5:ENST00000259050.8:ENST00000409175.6:ENST00000409591.5:ENST00000420397.1:ENST00000478396.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	66	2	2.49218	3.022165	3.55215	0.00855168	7.01039e-4	0.0780217	0.0241881
chr12	56687716	56687810	5336078	0	-	0.574468	(0.57,1]	chr12	510200	6	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	PTGES3	ENSG00000110958.16	ENST00000537473.2:ENST00000614328.4:ENST00000262033.11:ENST00000414274.7:ENST00000436399.6:ENST00000448157.6:ENST00000456859.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	103	2	2.66185	3.022075	3.3823	6.18469e-5	1.76823e-6	0.00694613	8.01021e-4
chr10	71825736	71825836	4642577	0	-	0.36	(0.35,0.378]	chr10	427144	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	PSAP	ENSG00000197746.15	ENST00000394936.8:ENST00000633965.1	protein_coding	protein_coding	protein_coding	protein_coding	3	72	2	2.99044	3.022055	3.05367	0.00894806	7.17897e-4	0.0799922	0.0244389
chr1	1573877	1573977	360313	0	-	0.45	(0.44,0.476]	chr1	41853	86	INTRON	INTRON	SSU72	ENSG00000160075.12	ENST00000291386.4:ENST00000378725.3:ENST00000359060.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	24	2	2.20949	3.021945	3.8344	0.0672585	0.041276	0.183051	0.161534
chr1	92358581	92358680	161977	0	+	0.464646	(0.44,0.476]	chr1	17497	123	INTRON	INTRON	RPAP2	ENSG00000122484.9	ENST00000610020.2:ENST00000477322.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	24	2	2.20949	3.021945	3.8344	0.0672585	0.041276	0.183051	0.161534
chr11	68920753	68920852	4819195	0	+	0.444444	(0.44,0.476]	chr11	449187	25	INTRON	INTRON	IGHMBP2	ENSG00000132740.10	ENST00000675615.1:ENST00000676228.1:ENST00000255078.8:ENST00000676173.1:ENST00000674955.1:ENST00000675118.1:ENST00000675305.1:ENST00000675648.1:ENST00000674775.1:ENST00000675684.1:ENST00000675493.1:ENST00000674745.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	24	2	2.20949	3.021945	3.8344	0.0672585	0.041276	0.183051	0.161534
chr14	35123147	35123245	5692248	0	+	0.469388	(0.44,0.476]	chr14	541423	3	UTR5	UTR5:EXON_MRNA:SS3_PROX:SS5_PROX:INTRON	PRORP:ENSG00000258790	ENSG00000100890.16:ENSG00000258790.1	ENST00000603588.1:ENST00000603611.5:ENST00000604073.1:ENST00000604948.5:ENST00000557565.1:ENST00000534898.9:ENST00000321130.14:ENST00000605201.1:ENST00000250377.11:ENST00000603544.5:ENST00000605870.5:ENST00000557404.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	24	2	2.20949	3.021945	3.8344	0.0672585	0.041276	0.183051	0.161534
chr15	95780532	95780626	6109779	0	+	0.446809	(0.44,0.476]	chr15	581799	9	INTRON	INTRON	ENSG00000275016	ENSG00000275016.5	ENST00000612595.2:ENST00000666682.1:ENST00000667774.1:ENST00000616588.4:ENST00000656202.1:ENST00000666386.1	lncRNA	lncRNA	lncRNA	lncRNA	1	24	2	2.20949	3.021945	3.8344	0.0672585	0.041276	0.183051	0.161534
chr19	9424024	9424123	7132448	0	-	0.454545	(0.44,0.476]	chr19	718745	34	INTRON	INTRON	ZNF266	ENSG00000174652.20	ENST00000592904.7:ENST00000588221.5:ENST00000588933.5:ENST00000590306.5:ENST00000651268.1:ENST00000592292.5	protein_coding	protein_coding	protein_coding	protein_coding	1	24	2	2.20949	3.021945	3.8344	0.0672585	0.041276	0.183051	0.161534
chr2	32213045	32213145	730266	0	+	0.46	(0.44,0.476]	chr2	84226	31	INTRON	INTRON	SLC30A6	ENSG00000152683.14	ENST00000357055.7:ENST00000435660.5:ENST00000282587.9:ENST00000449777.5:ENST00000454324.5:ENST00000379343.6:ENST00000406369.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	24	2	2.20949	3.021945	3.8344	0.0672585	0.041276	0.183051	0.161534
chr2	159255395	159255495	1249181	0	-	0.46	(0.44,0.476]	chr2	132454	65	INTRON	INTRON	WDSUB1	ENSG00000196151.11	ENST00000359774.9:ENST00000358147.8:ENST00000409990.7:ENST00000392796.7:ENST00000409124.1	protein_coding	protein_coding	protein_coding	protein_coding	1	24	2	2.20949	3.021945	3.8344	0.0672585	0.041276	0.183051	0.161534
chr2	233394397	233394497	1040230	0	+	0.46	(0.44,0.476]	chr2	111002	21	INTRON	INTRON	DGKD	ENSG00000077044.11	ENST00000264057.7:ENST00000427930.5:ENST00000447484.5:ENST00000409813.7	protein_coding	protein_coding	protein_coding	protein_coding	1	24	2	2.20949	3.021945	3.8344	0.0672585	0.041276	0.183051	0.161534
chr20	35351169	35351268	7334587	0	-	0.464646	(0.44,0.476]	chr20	747146	35	INTRON	INTRON	UQCC1	ENSG00000101019.22	ENST00000374380.6:ENST00000374394.7:ENST00000374384.6:ENST00000359226.6:ENST00000349714.9:ENST00000457259.5:ENST00000374385.10:ENST00000453855.5:ENST00000397556.7:ENST00000424405.5:ENST00000443429.5:ENST00000438533.5:ENST00000397554.5:ENST00000491125.5:ENST00000491040.5:ENST00000397553.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	24	2	2.20949	3.021945	3.8344	0.0672585	0.041276	0.183051	0.161534
chr4	150479035	150479135	2266353	0	-	0.46	(0.44,0.476]	chr4	220669	69	INTRON	INTRON	LRBA	ENSG00000198589.14	ENST00000357115.9:ENST00000651943.2:ENST00000510413.5:ENST00000503716.5:ENST00000509835.5:ENST00000648823.1:ENST00000648626.1:ENST00000651695.1:ENST00000648878.1:ENST00000651035.1:ENST00000507224.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	24	2	2.20949	3.021945	3.8344	0.0672585	0.041276	0.183051	0.161534
chr4	152438482	152438582	2274112	0	-	0.45	(0.44,0.476]	chr4	221114	256	INTRON	INTRON	FBXW7	ENSG00000109670.16	ENST00000281708.10:ENST00000603548.6:ENST00000604872.6:ENST00000647166.1:ENST00000643834.1:ENST00000642901.1	protein_coding	protein_coding	protein_coding	protein_coding	1	24	2	2.20949	3.021945	3.8344	0.0672585	0.041276	0.183051	0.161534
chr5	43144495	43144595	2349264	0	+	0.45	(0.44,0.476]	chr5	226667	48	INTRON	INTRON	ZNF131	ENSG00000172262.12	ENST00000515326.5:ENST00000682664.1:ENST00000510026.5:ENST00000504359.1:ENST00000509156.5:ENST00000508259.5:ENST00000507218.5:ENST00000306938.8:ENST00000505606.6:ENST00000509634.5:ENST00000509341.5:ENST00000511736.5:ENST00000509931.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	24	2	2.20949	3.021945	3.8344	0.0672585	0.041276	0.183051	0.161534
chr7	90353509	90353598	3347327	0	+	0.235955	[0,0.28]	chr7	311982	1	INTRON	INTRON	GTPBP10	ENSG00000105793.16	ENST00000453512.5:ENST00000421719.5:ENST00000426366.5:ENST00000450619.5:ENST00000257659.12:ENST00000417207.5:ENST00000380058.7:ENST00000222511.11:ENST00000439832.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	94	2	2.5957	3.02168	3.44766	0.00656974	0.00294011	0.0736092	0.0483547
chr9	120778250	120778350	4335312	0	-	0.37	(0.35,0.378]	chr9	398249	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	FBXW2	ENSG00000119402.18	ENST00000684405.1:ENST00000684001.1:ENST00000684047.1:ENST00000608872.6:ENST00000453291.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	72	2	2.49643	3.021635	3.54684	0.00752974	0.00119142	0.0773151	0.0315806
chr11	3755303	3755402	4894740	0	-	0.50505	(0.476,0.515]	chr11	458876	15	INTRON	INTRON	NUP98	ENSG00000110713.17	ENST00000359171.8:ENST00000324932.12:ENST00000650171.1:ENST00000355260.7:ENST00000397004.8:ENST00000397007.8:ENST00000527104.5:ENST00000529379.1:ENST00000397013.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	65	2	2.58615	3.02163	3.45711	0.00515536	0.00140905	0.0650394	0.0340865
chr4	2883626	2883723	1915431	0	+	0.463918	(0.44,0.476]	chr4	192287	12	INTRON	INTRON	ADD1	ENSG00000087274.19	ENST00000683351.1:ENST00000398125.5:ENST00000264758.11:ENST00000508684.5:ENST00000510101.5:ENST00000511797.5:ENST00000513328.6:ENST00000509039.5:ENST00000508277.5:ENST00000503455.6:ENST00000355842.7:ENST00000651918.1:ENST00000503169.5:ENST00000398129.5:ENST00000398123.6:ENST00000534870.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	39	2	2.03266	3.0215199999999998	4.01038	0.0433743	0.0155853	0.148082	0.109411
chr1	173973523	173973622	587547	0	-	0.272727	[0,0.28]	chr1	70722	5	INTRON	INTRON	RC3H1	ENSG00000135870.12	ENST00000367696.7:ENST00000258349.8:ENST00000367694.2	protein_coding	protein_coding	protein_coding	protein_coding	2	38	2	1.84147	3.021265	4.20106	0.0695895	0.0610416	0.193277	0.184298
chr1	246878401	246878501	681404	0	-	0.2	[0,0.28]	chr1	79929	7	INTRON	INTRON	AHCTF1	ENSG00000153207.16	ENST00000648844.2:ENST00000326225.3:ENST00000366508.5:ENST00000470300.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	38	2	1.84147	3.021265	4.20106	0.0695895	0.0610416	0.193277	0.184298
chr10	50456841	50456941	4619015	0	-	0.4	(0.378,0.408]	chr10	425432	229	INTRON	INTRON	SGMS1	ENSG00000198964.14	ENST00000429490.5:ENST00000361781.7:ENST00000619438.4:ENST00000609445.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	82	2	2.17296	3.021235	3.86951	0.0110512	1.55755e-4	0.0873897	0.0106835
chr1	227311004	227311104	651646	0	-	0.36	(0.35,0.378]	chr1	77110	459	INTRON	INTRON	CDC42BPA	ENSG00000143776.20	ENST00000366766.8:ENST00000366769.7:ENST00000334218.9:ENST00000366767.7:ENST00000366764.8:ENST00000478573.6:ENST00000682551.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	53	2	2.72497	3.021165	3.31736	0.0198266	0.00211072	0.109608	0.0425419
chr5	34912969	34913069	2600619	0	-	0.32	(0.28,0.32]	chr5	247100	1	SS5_PROX	SS5_PROX:INTRON	RAD1	ENSG00000113456.19	ENST00000382038.7:ENST00000341754.8:ENST00000325577.8:ENST00000513914.5:ENST00000511456.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	64	2	2.73945	3.02104	3.30263	0.017681	0.0038504	0.11319	0.0542786
chr12	12717367	12717461	5080882	0	+	0.574468	(0.57,1]	chr12	480181	1	UTR5	UTR5:EXON_MRNA:INTRON	CDKN1B	ENSG00000111276.12	ENST00000684771.1:ENST00000682620.1:ENST00000477087.1:ENST00000228872.9:ENST00000614874.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	75	2	2.74113	3.0208	3.30047	1.93623e-4	1.64629e-5	0.0127226	0.00306044
chr6	160037509	160037607	3023663	0	+	0.336735	(0.32,0.35]	chr6	282064	9	INTRON	INTRON	IGF2R	ENSG00000197081.16	ENST00000676781.1:ENST00000677704.1:ENST00000356956.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	40	2	1.67393	3.02074	4.36755	0.0496128	0.0300552	0.174685	0.129138
chr13	25340333	25340433	5457585	0	+	0.28	[0,0.28]	chr13	522982	3	UTR3	UTR3:EXON_MRNA:INTRON	NUP58	ENSG00000139496.17	ENST00000481980.2:ENST00000490231.6:ENST00000695571.1:ENST00000477876.2:ENST00000695572.1:ENST00000695573.1:ENST00000381736.8:ENST00000381718.8:ENST00000695575.1:ENST00000695574.1:ENST00000695576.1:ENST00000695577.1:ENST00000476553.2:ENST00000695578.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	69	2	2.86008	3.02073	3.18138	0.0177015	0.00487606	0.105304	0.0640618
chr1	16638867	16638967	383769	0	-	0.5	(0.476,0.515]	chr1	45226	33	INTRON	INTRON	CROCCP2	ENSG00000215908.10	ENST00000639456.1:ENST00000412962.4:ENST00000635081.1:ENST00000362058.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	11	177	2	1.949	3.020615	4.09223	0.00210201	2.96351e-6	0.0425419	0.00120829
chr16	15139153	15139253	6450847	0	-	0.57	(0.515,0.57]	chr16	621698	3	INTRON	INTRON	PKD1P6	ENSG00000250251.6	ENST00000343738.10	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	2	29	2	1.8707	3.020535	4.17037	0.0523213	0.0139194	0.160182	0.10247
chr6	33270551	33270636	3082427	0	-	0.470588	(0.44,0.476]	chr6	288239	3	SS3_PROX	SS3_PROX:INTRON	VPS52	ENSG00000223501.9	ENST00000478934.5:ENST00000482399.5:ENST00000445902.3:ENST00000463486.5:ENST00000464425.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	50	2	2.81896	3.02044	3.22192	0.0120766	0.00360821	0.0962311	0.0533855
chr1	91906250	91906335	504826	0	-	0.6	(0.57,1]	chr1	59664	6	UTR5	UTR5:EXON_MRNA	TGFBR3	ENSG00000069702.11	ENST00000370399.6	protein_coding	protein_coding	protein_coding	protein_coding	4	47	2	2.73499	3.020435	3.30588	0.00237434	1.12273e-4	0.0438057	0.00903968
chr15	65776863	65776962	6209642	0	-	0.575758	(0.57,1]	chr15	592617	96	INTRON	INTRON	DENND4A	ENSG00000174485.16	ENST00000443035.8:ENST00000431932.6:ENST00000564674.5:ENST00000568515.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	47	2	2.73499	3.020435	3.30588	0.00237434	1.12273e-4	0.0438057	0.00903968
chr22	23225830	23225930	7483660	0	+	0.43	(0.408,0.44]	chr22	763541	261	INTRON	INTRON	BCR	ENSG00000186716.21	ENST00000479188.5:ENST00000359540.7:ENST00000305877.13:ENST00000463770.5:ENST00000487679.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	107	2	2.81829	3.020435	3.2225799999999998	7.33803e-4	2.79412e-4	0.0249226	0.0148832
chr17	58003818	58003918	6800015	0	-	0.46	(0.44,0.476]	chr17	671424	30	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	ENSG00000266086:SRSF1	ENSG00000266086.3:ENSG00000136450.13	ENST00000578794.2:ENST00000665125.1:ENST00000258962.5:ENST00000582730.6:ENST00000581497.1:ENST00000584668.5:ENST00000581979.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	19	352	2	2.5328	3.0204199999999997	3.50804	2.36764e-5	9.47299e-7	0.00380885	6.04708e-4
chr15	92996160	92996258	6104695	0	+	0.489796	(0.476,0.515]	chr15	581581	28	INTRON	INTRON	CHD2	ENSG00000173575.22	ENST00000626874.2:ENST00000394196.9:ENST00000637572.1:ENST00000636881.1:ENST00000636306.1:ENST00000637789.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	104	2	2.89673	3.020415	3.1441	5.63876e-4	3.48163e-4	0.0219303	0.0166215
chr16	16072628	16072728	6309002	0	+	0.44	(0.408,0.44]	chr16	603590	5	INTRON	INTRON	ABCC1	ENSG00000103222.20	ENST00000678422.1:ENST00000677164.1:ENST00000399408.7:ENST00000572882.3:ENST00000399410.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	49	2	2.78122	3.0203499999999996	3.25948	0.015812	0.00246454	0.101453	0.0459102
chr6	166943440	166943528	3264182	0	-	0.431818	(0.408,0.44]	chr6	303025	5	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ENSG00000249141:RNASET2	ENSG00000249141.1:ENSG00000026297.17	ENST00000507747.1:ENST00000508775.6:ENST00000683770.1:ENST00000611959.2:ENST00000620173.5:ENST00000682774.1:ENST00000684236.1:ENST00000683968.1:ENST00000682498.1:ENST00000366855.10:ENST00000421787.5:ENST00000476238.6:ENST00000028008.9:ENST00000478180.6:ENST00000467705.6:ENST00000499370.6:ENST00000358165.7:ENST00000496851.6:ENST00000684086.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	49	2	2.78122	3.0203499999999996	3.25948	0.015812	0.00246454	0.101453	0.0459102
chr10	124916433	124916525	4712554	0	-	0.402174	(0.378,0.408]	chr10	434836	2	EXON_LNCRNA	EXON_LNCRNA	ENSG00000289280	ENSG00000289280.1	ENST00000692712.1	lncRNA	lncRNA	lncRNA	lncRNA	2	35	2	1.94681	3.0203	4.09379	0.0457723	0.023912	0.149888	0.129075
chr5	171397562	171397661	2546667	0	+	0.252525	[0,0.28]	chr5	243099	42	INTRON	INTRON	NPM1	ENSG00000181163.14	ENST00000517671.5:ENST00000676613.1:ENST00000678186.1:ENST00000678267.1:ENST00000677297.1:ENST00000521672.6:ENST00000679190.1:ENST00000677467.1:ENST00000678280.1:ENST00000676625.1:ENST00000679006.1:ENST00000351986.10:ENST00000676504.1:ENST00000676589.1:ENST00000677357.1:ENST00000679233.1:ENST00000296930.10:ENST00000393820.2:ENST00000521260.2:ENST00000518587.2:ENST00000678774.1:ENST00000677600.1:ENST00000677741.1:ENST00000677325.1:ENST00000677672.1:ENST00000677907.1:ENST00000677904.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	71	2	2.8569	3.0202400000000003	3.18358	0.013822	0.00694532	0.10247	0.0718189
chr4	138240502	138240601	2245815	0	-	0.444444	(0.44,0.476]	chr4	219514	37	INTRON	INTRON	SLC7A11	ENSG00000151012.13	ENST00000280612.9	protein_coding	protein_coding	protein_coding	protein_coding	3	65	2	2.86452	3.0201200000000004	3.17572	0.00427037	0.00159222	0.0573912	0.0367961
chr19	39844321	39844419	7182623	0	-	0.438776	(0.408,0.44]	chr19	726340	32	INTRON	INTRON	FBL	ENSG00000105202.9	ENST00000221801.8:ENST00000594443.5:ENST00000601274.5:ENST00000597634.5:ENST00000598417.5:ENST00000599159.1:ENST00000594309.5:ENST00000599134.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	33	2	1.81572	3.020095	4.22447	0.0626779	0.0161655	0.175915	0.109464
chr3	37337163	37337263	1396714	0	+	0.42	(0.408,0.44]	chr3	146432	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GOLGA4	ENSG00000144674.17	ENST00000444882.5:ENST00000356847.8:ENST00000361924.7:ENST00000437131.1	protein_coding	protein_coding	protein_coding	protein_coding	2	33	2	1.81572	3.020095	4.22447	0.0626779	0.0161655	0.175915	0.109464
chr4	6675555	6675653	1921507	0	+	0.336735	(0.32,0.35]	chr4	192960	11	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ENSG00000170846	ENSG00000170846.17	ENST00000645429.1:ENST00000307533.10:ENST00000635031.1:ENST00000444232.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	12	286	2	2.69619	3.019975	3.34376	7.74113e-5	1.28071e-5	0.00735438	0.00283726
chrX	124039310	124039409	7717536	0	+	0.464646	(0.44,0.476]	chrX	789512	13	INTRON	INTRON	STAG2	ENSG00000101972.20	ENST00000218089.13:ENST00000455404.5:ENST00000483575.5:ENST00000687810.1:ENST00000687071.1:ENST00000469481.1:ENST00000371160.5:ENST00000435103.5:ENST00000687852.1:ENST00000371145.8:ENST00000692982.1:ENST00000371157.7:ENST00000691035.1:ENST00000686802.1:ENST00000691383.1:ENST00000686127.1:ENST00000371144.7:ENST00000458176.5:ENST00000466748.5:ENST00000471107.1:ENST00000428941.5:ENST00000435215.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	168	2	2.54687	3.019965	3.49306	0.0011	2.45105e-6	0.030486	9.94123e-4
chr2	127800561	127800661	1225779	0	-	0.45	(0.44,0.476]	chr2	130519	292	INTRON	INTRON	WDR33	ENSG00000136709.12	ENST00000322313.9:ENST00000436787.5:ENST00000393006.5:ENST00000409658.7:ENST00000408998.1	protein_coding	protein_coding	protein_coding	protein_coding	3	65	2	2.64669	3.019955	3.39322	0.0040295	0.00187283	0.0578376	0.0390476
chr20	384375	384471	7219032	0	+	0.53125	(0.515,0.57]	chr20	733506	14	INTRON	INTRON	TRIB3	ENSG00000101255.12	ENST00000615226.4:ENST00000217233.9:ENST00000449710.5:ENST00000422053.3	protein_coding	protein_coding	protein_coding	protein_coding	7	50	2	1.27738	3.01991	4.76244	0.0499863	0.00362147	0.17488	0.0533855
chr12	46367938	46368037	5316653	0	-	0.464646	(0.44,0.476]	chr12	505810	2	INTRON	INTRON	SLC38A2	ENSG00000134294.14	ENST00000256689.10:ENST00000549258.5:ENST00000612232.1:ENST00000547252.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	13	243	2	2.47918	3.01987	3.56056	9.7324e-5	3.65116e-6	0.00830443	0.001363
chr16	90133634	90133726	6424208	0	+	0.413043	(0.408,0.44]	chr16	617194	1	SS5_PROX	SS5_PROX:INTRON	FAM157C	ENSG00000260528.6	ENST00000563357.1:ENST00000660047.1:ENST00000568070.1:ENST00000660257.1	lncRNA	lncRNA	lncRNA	lncRNA	5	91	2	2.06888	3.01981	3.97074	0.00864911	8.66152e-5	0.0787025	0.00783027
chr12	112107516	112107616	5415416	0	-	0.29	(0.28,0.32]	chr12	517255	97	INTRON	INTRON	NAA25	ENSG00000111300.10	ENST00000261745.9:ENST00000552527.5:ENST00000549711.5:ENST00000551858.1:ENST00000547133.1:ENST00000548627.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	61	2	2.96187	3.019655	3.07744	0.0114995	0.00604536	0.0889104	0.0700813
chr15	66583047	66583147	6050791	0	+	0.38	(0.378,0.408]	chr15	576221	4	INTRON	INTRON	LINC01169	ENSG00000259471.1	ENST00000558797.1	lncRNA	lncRNA	lncRNA	lncRNA	4	93	2	2.86955	3.019555	3.16956	0.00159247	5.70211e-4	0.0367961	0.0220524
chr1	167222455	167222555	244864	0	+	0.52	(0.515,0.57]	chr1	29245	11	INTRON	INTRON	POU2F1	ENSG00000143190.23	ENST00000559038.5:ENST00000367866.7:ENST00000557909.5:ENST00000271411.8:ENST00000429375.6:ENST00000560232.6:ENST00000442313.5:ENST00000367865.5:ENST00000492850.5:ENST00000541643.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	80	2	2.41082	3.019515	3.62821	0.00167359	4.12866e-4	0.0370386	0.0181365
chr14	30932214	30932306	5856925	0	-	0.413043	(0.408,0.44]	chr14	556468	4	EXON_LNCRNA	EXON_LNCRNA:INTRON	STRN3	ENSG00000196792.12	ENST00000355683.9:ENST00000357479.10:ENST00000555358.5:ENST00000366206.2:ENST00000556577.1:ENST00000554991.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	66	2	2.55103	3.0194799999999997	3.48793	0.00587353	0.00130904	0.0690758	0.0331539
chr22	19476789	19476887	7554875	0	-	0.479592	(0.476,0.515]	chr22	772398	8	INTRON	INTRON	UFD1	ENSG00000070010.19	ENST00000263202.15:ENST00000399523.5:ENST00000459854.5:ENST00000447868.5:ENST00000421968.6:ENST00000484101.5:ENST00000489406.1:ENST00000494054.1:ENST00000474226.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	65	2	2.45598	3.019205	3.58243	0.00945755	6.18479e-4	0.0817766	0.0223951
chr22	32480949	32481047	7507781	0	+	0.377551	(0.35,0.378]	chr22	766228	13	INTRON	INTRON	FBXO7	ENSG00000100225.18	ENST00000420700.5:ENST00000425028.5:ENST00000266087.12:ENST00000492535.1:ENST00000452138.3:ENST00000397426.5:ENST00000444207.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	54	2	2.53856	3.019115	3.49967	0.0326077	9.80974e-4	0.133687	0.0287765
chr1	19102525	19102621	385632	0	-	0.40625	(0.378,0.408]	chr1	45699	5	INTRON	INTRON	UBR4	ENSG00000127481.15	ENST00000375254.8:ENST00000375224.1	protein_coding	protein_coding	protein_coding	protein_coding	3	37	2	1.72045	3.01872	4.31699	0.0424671	0.0250408	0.161763	0.12011
chr1	202944417	202944512	621300	0	-	0.378947	(0.378,0.408]	chr1	73789	6	EXON_MRNA	EXON_MRNA:SS3_PROX:SS5_PROX:INTRON	ADIPOR1	ENSG00000159346.13	ENST00000495562.5:ENST00000340990.10:ENST00000367254.7:ENST00000417068.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	37	2	1.72045	3.01872	4.31699	0.0424671	0.0250408	0.161763	0.12011
chr4	150880453	150880553	2270406	0	-	0.43	(0.408,0.44]	chr4	220841	73	INTRON	INTRON	LRBA	ENSG00000198589.14	ENST00000357115.9:ENST00000651943.2:ENST00000510413.5:ENST00000651035.1:ENST00000507224.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	134	2	2.45916	3.01869	3.57822	6.48651e-4	6.75419e-5	0.0230814	0.00724876
chr11	61966241	61966323	4958191	0	-	0.52439	(0.515,0.57]	chr11	466167	3	INTRON	INTRON	FTH1	ENSG00000167996.16	ENST00000529191.5:ENST00000529631.5:ENST00000530019.5:ENST00000273550.12:ENST00000534180.1:ENST00000532829.5:ENST00000620041.4:ENST00000526640.5:ENST00000532601.1:ENST00000534719.1:ENST00000533138.1:ENST00000529548.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	16	270	2	2.81606	3.01837	3.22068	6.64114e-6	1.6565e-6	0.00181987	8.58048e-4
chr19	51879194	51879284	7204319	0	-	0.477778	(0.476,0.515]	chr19	731052	3	INTRON	INTRON	ZNF577	ENSG00000161551.15	ENST00000638827.1:ENST00000639703.1:ENST00000640955.1:ENST00000301399.12:ENST00000638348.2:ENST00000451628.9:ENST00000639636.2:ENST00000638325.1:ENST00000638814.1:ENST00000638538.1:ENST00000638423.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	119	2	2.59672	3.0183299999999997	3.43994	6.3664e-4	1.29236e-4	0.0228285	0.0103343
chr11	34077340	34077439	4767913	0	+	0.292929	(0.28,0.32]	chr11	440978	3	INTRON	INTRON	CAPRIN1	ENSG00000135387.21	ENST00000341394.9:ENST00000528856.5:ENST00000389645.7:ENST00000532820.5:ENST00000530820.5:ENST00000529307.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	42	2	1.61031	3.0183050000000002	4.4263	0.0600513	0.0330296	0.190658	0.133816
chr7	92133072	92133172	3569001	0	-	0.32	(0.28,0.32]	chr7	332489	8	INTRON	INTRON	CYP51A1:ENSG00000289027	ENSG00000001630.18:ENSG00000289027.1	ENST00000691309.1:ENST00000003100.13:ENST00000692281.1:ENST00000693096.1:ENST00000450723.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	42	2	1.61031	3.0183050000000002	4.4263	0.0600513	0.0330296	0.190658	0.133816
chr15	78447561	78447661	6067577	0	+	0.52	(0.515,0.57]	chr15	577920	73	INTRON	INTRON	IREB2	ENSG00000136381.13	ENST00000560840.5:ENST00000559215.5:ENST00000258886.13:ENST00000558525.5:ENST00000560440.5:ENST00000558570.5:ENST00000560454.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	57	2	2.45585	3.018245	3.58064	0.00797827	6.54693e-4	0.0798772	0.0233335
chr2	171144751	171144851	1263938	0	-	0.31	(0.28,0.32]	chr2	133921	265	INTRON	INTRON	TLK1	ENSG00000198586.14	ENST00000431350.7:ENST00000360843.7:ENST00000359766.7:ENST00000521943.5:ENST00000409443.6:ENST00000413010.5:ENST00000470340.1:ENST00000466220.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	63	2	2.45545	3.018225	3.581	0.0438092	8.63544e-4	0.14901	0.0266494
chr1	1776693	1776792	361719	0	-	0.474747	(0.44,0.476]	chr1	42219	109	INTRON	INTRON	NADK	ENSG00000008130.15	ENST00000378625.5:ENST00000341991.7:ENST00000341426.9:ENST00000492845.6:ENST00000492768.5:ENST00000460602.5:ENST00000464373.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	89	2	2.86452	3.01812	3.17172	0.00159222	5.10693e-4	0.0367961	0.020816
chr1	51238678	51238777	98201	0	+	0.393939	(0.378,0.408]	chr1	13196	14	INTRON	INTRON	RNF11	ENSG00000123091.5	ENST00000242719.4:ENST00000494873.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	68	2	2.35103	3.0181	3.68517	0.014158	3.90172e-4	0.0959618	0.0177751
chr22	23201450	23201550	7483416	0	+	0.53	(0.515,0.57]	chr22	763541	17	INTRON	INTRON	BCR	ENSG00000186716.21	ENST00000479188.5:ENST00000359540.7:ENST00000305877.13:ENST00000463770.5:ENST00000487679.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	138	2	2.55565	3.01783	3.48001	3.23259e-4	1.20433e-5	0.0159645	0.00276023
chr21	43074132	43074230	7468154	0	-	0.459184	(0.44,0.476]	chr21	761086	4	INTRON	INTRON	CBS	ENSG00000160200.18	ENST00000352178.9:ENST00000359624.7:ENST00000398165.8:ENST00000398158.5:ENST00000441030.5:ENST00000470912.5:ENST00000465732.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	42	2	1.60176	3.017765	4.43377	0.0389597	0.0162803	0.160861	0.101453
chr14	103720939	103721038	5828581	0	+	0.525253	(0.515,0.57]	chr14	553163	46	INTRON	INTRON	ZFYVE21	ENSG00000100711.14	ENST00000216602.10:ENST00000554255.5:ENST00000311141.7:ENST00000553512.5:ENST00000554630.5:ENST00000556610.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	43	2	2.60899	3.017715	3.42644	0.0232669	0.00106731	0.118148	0.0300133
chr2	183018074	183018174	1285826	0	-	0.53	(0.515,0.57]	chr2	135424	144	INTRON	INTRON	NCKAP1	ENSG00000061676.15	ENST00000361354.9:ENST00000360982.2	protein_coding	protein_coding	protein_coding	protein_coding	2	43	2	2.60899	3.017715	3.42644	0.0232669	0.00106731	0.118148	0.0300133
chr19	11603909	11604009	7018082	0	+	0.5	(0.476,0.515]	chr19	697689	3	SS3_PROX	SS3_PROX:INTRON	ZNF627	ENSG00000198551.10	ENST00000593279.5:ENST00000585493.5:ENST00000587939.5:ENST00000361113.10:ENST00000588174.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	145	2	2.24144	3.01769	3.79394	0.00122866	1.81632e-5	0.0325799	0.0034729
chr5	131706646	131706746	2719833	0	-	0.33	(0.32,0.35]	chr5	255689	1	SS3_PROX	SS3_PROX:INTRON	FNIP1	ENSG00000217128.13	ENST00000510461.6:ENST00000307954.12:ENST00000307968.11:ENST00000511848.1	protein_coding	protein_coding	protein_coding	protein_coding	3	76	2	2.3471	3.0174250000000002	3.68775	0.0156413	4.66127e-4	0.101393	0.0195589
chr1	67053489	67053562	477389	0	-	0.561644	(0.515,0.57]	chr1	57456	1	SS5_PROX	SS5_PROX:INTRON	SLC35D1	ENSG00000116704.8	ENST00000235345.6	protein_coding	protein_coding	protein_coding	protein_coding	2	27	2	1.94945	3.0174149999999997	4.08538	0.0414068	0.0253843	0.161557	0.12011
chr16	85804661	85804752	6416691	0	+	0.527473	(0.515,0.57]	chr16	615590	1	EXON_MRNA	EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	COX4I1	ENSG00000131143.10	ENST00000565078.5:ENST00000570123.5:ENST00000568339.5:ENST00000566115.5:ENST00000567241.5:ENST00000568794.5:ENST00000562336.5:ENST00000253452.8:ENST00000563774.1:ENST00000561569.5:ENST00000567266.5:ENST00000566405.5:ENST00000564544.1:ENST00000566617.1:ENST00000564903.1:ENST00000564648.1:ENST00000569997.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	27	2	1.94945	3.0174149999999997	4.08538	0.0414068	0.0253843	0.161557	0.12011
chr7	121113857	121113957	3394897	0	+	0.54	(0.515,0.57]	chr7	317723	134	INTRON	INTRON	CPED1	ENSG00000106034.18	ENST00000310396.10:ENST00000428526.5:ENST00000450913.6:ENST00000423795.5:ENST00000443817.1	protein_coding	protein_coding	protein_coding	protein_coding	2	27	2	1.94945	3.0174149999999997	4.08538	0.0414068	0.0253843	0.161557	0.12011
chr3	128883600	128883695	1498267	0	+	0.557895	(0.515,0.57]	chr3	156401	6	UTR5	UTR5:EXON_MRNA:INTRON	ACAD9	ENSG00000177646.20	ENST00000681583.1:ENST00000681367.1:ENST00000679613.1:ENST00000505602.1:ENST00000514643.5:ENST00000680636.1:ENST00000511325.2:ENST00000681319.1:ENST00000681585.1:ENST00000681784.1:ENST00000308982.12:ENST00000512801.5:ENST00000679399.1:ENST00000681552.1:ENST00000511227.5:ENST00000505192.5:ENST00000679990.1:ENST00000514336.1:ENST00000515429.1:ENST00000681886.1:ENST00000679431.1:ENST00000680764.1:ENST00000505867.5:ENST00000680744.1:ENST00000679824.1:ENST00000681589.1:ENST00000679715.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	57	2	2.7208	3.01734	3.31388	0.00306828	0.00174704	0.0494933	0.0386026
chr19	23662931	23663031	7163724	0	-	0.41	(0.408,0.44]	chr19	724042	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ZNF675	ENSG00000197372.10	ENST00000601935.5:ENST00000600313.5:ENST00000596211.5:ENST00000359788.9:ENST00000599535.1:ENST00000597074.5:ENST00000601010.5:ENST00000599168.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	53	2	2.27698	3.017265	3.75755	0.0583528	2.62433e-4	0.167723	0.0143317
chr7	116865341	116865441	3385390	0	+	0.53	(0.515,0.57]	chr7	317031	23	INTRON	INTRON	CAPZA2	ENSG00000198898.15	ENST00000464223.5:ENST00000484325.1:ENST00000414148.6:ENST00000361183.8:ENST00000449080.5:ENST00000639546.1:ENST00000426421.5:ENST00000490693.5:ENST00000417431.5:ENST00000461878.5:ENST00000466023.1:ENST00000464669.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	43	2	2.83188	3.01714	3.2024	0.0108207	0.00322022	0.0920575	0.0507087
chr9	26887012	26887112	4237557	0	-	0.53	(0.515,0.57]	chr9	389564	3	SS5_PROX	SS5_PROX:INTRON	CAAP1	ENSG00000120159.13	ENST00000333916.8:ENST00000650615.1:ENST00000625311.1:ENST00000520187.1:ENST00000483493.6:ENST00000495958.5:ENST00000517946.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	43	2	2.83188	3.01714	3.2024	0.0108207	0.00322022	0.0920575	0.0507087
chr17	30478494	30478592	6589065	0	+	0.316327	(0.28,0.32]	chr17	640769	1	EXON_LNCRNA	EXON_LNCRNA:INTRON	GOSR1	ENSG00000108587.16	ENST00000225724.9:ENST00000451249.7:ENST00000467635.6:ENST00000427274.6:ENST00000467337.6:ENST00000537788.6:ENST00000491489.6:ENST00000581721.5:ENST00000414833.2:ENST00000579905.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	234	2	2.99724	3.016855	3.03647	2.30527e-4	3.93965e-5	0.013917	0.00508929
chr2	58217247	58217337	1126509	0	-	0.422222	(0.408,0.44]	chr2	120939	1	UTR3	UTR3:EXON_MRNA:INTRON	FANCL	ENSG00000115392.13	ENST00000696400.1:ENST00000403295.8:ENST00000696492.1:ENST00000427708.7:ENST00000696314.1:ENST00000696315.1:ENST00000696454.1:ENST00000696508.1:ENST00000696548.1:ENST00000696542.1:ENST00000696319.1:ENST00000403676.6:ENST00000696433.1:ENST00000696434.1:ENST00000696499.1:ENST00000696564.1:ENST00000402135.8:ENST00000696546.1:ENST00000233741.9:ENST00000696316.1:ENST00000696378.1:ENST00000696435.1:ENST00000696493.1:ENST00000696543.1:ENST00000696544.1:ENST00000696545.1:ENST00000696565.1:ENST00000696620.1:ENST00000696621.1:ENST00000696635.1:ENST00000696364.1:ENST00000696634.1:ENST00000696317.1:ENST00000696622.1:ENST00000696467.1:ENST00000696547.1:ENST00000449070.6:ENST00000696305.1:ENST00000417361.2:ENST00000696338.1:ENST00000696361.1:ENST00000696318.1:ENST00000696371.1:ENST00000696409.1:ENST00000696410.1:ENST00000696455.1:ENST00000696468.1:ENST00000696527.1:ENST00000696567.1:ENST00000696324.1:ENST00000696566.1:ENST00000696623.1:ENST00000446381.6:ENST00000696469.1:ENST00000696624.1:ENST00000696411.1:ENST00000470506.2:ENST00000696358.1:ENST00000696373.1:ENST00000696394.1:ENST00000696320.1:ENST00000696395.1:ENST00000696341.1:ENST00000696340.1:ENST00000696374.1:ENST00000696396.1:ENST00000696342.1:ENST00000696325.1:ENST00000696399.1:ENST00000696398.1:ENST00000696306.1:ENST00000696397.1:ENST00000696360.1:ENST00000696344.1:ENST00000696343.1:ENST00000696362.1:ENST00000696528.1:ENST00000696326.1:ENST00000696625.1:ENST00000696510.1:ENST00000696438.1:ENST00000696496.1:ENST00000696509.1:ENST00000696569.1:ENST00000696457.1:ENST00000696458.1:ENST00000696473.1:ENST00000696495.1:ENST00000696415.1:ENST00000696472.1:ENST00000696459.1:ENST00000696416.1:ENST00000696530.1:ENST00000696460.1:ENST00000696570.1:ENST00000696531.1:ENST00000696307.1:ENST00000696345.1:ENST00000696377.1:ENST00000696417.1:ENST00000696594.1:ENST00000696595.1:ENST00000696379.1:ENST00000696346.1:ENST00000696380.1:ENST00000696347.1:ENST00000696461.1:ENST00000696596.1:ENST00000696549.1:ENST00000696597.1:ENST00000696550.1:ENST00000696598.1:ENST00000696321.1:ENST00000696476.1:ENST00000696477.1:ENST00000696511.1:ENST00000481670.3:ENST00000696403.1:ENST00000696551.1:ENST00000696308.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	69	2	2.27464	3.01673	3.75882	0.0158016	4.04678e-4	0.109464	0.0185763
chr1	173890405	173890504	256970	0	+	0.333333	(0.32,0.35]	chr1	30716	44	UTR3	UTR3:EXON_MRNA	ZBTB37	ENSG00000185278.16	ENST00000367701.10	protein_coding	protein_coding	protein_coding	protein_coding	3	77	2	2.45306	3.016425	3.57979	0.00916394	0.00118589	0.0855292	0.0315652
chr10	35548822	35548922	4426640	0	+	0.39	(0.378,0.408]	chr10	407952	182	INTRON	INTRON	CCNY	ENSG00000108100.18	ENST00000374706.5:ENST00000374704.8:ENST00000265375.13:ENST00000339497.7:ENST00000492478.5:ENST00000465416.5:ENST00000497692.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	30	2	1.81685	3.01624	4.21563	0.0597868	0.0315429	0.189982	0.13151
chr11	77786657	77786757	4995636	0	-	0.38	(0.378,0.408]	chr11	472047	216	INTRON	INTRON	RSF1	ENSG00000048649.14	ENST00000308488.11:ENST00000528095.5:ENST00000440064.2:ENST00000467567.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	30	2	1.81685	3.01624	4.21563	0.0597868	0.0315429	0.189982	0.13151
chr3	43427113	43427213	1673484	0	-	0.4	(0.378,0.408]	chr3	170966	539	INTRON	INTRON	ANO10	ENSG00000160746.13	ENST00000292246.8:ENST00000350459.8:ENST00000396091.7:ENST00000414522.6:ENST00000451430.6:ENST00000448045.1	protein_coding	protein_coding	protein_coding	protein_coding	2	30	2	1.81685	3.01624	4.21563	0.0597868	0.0315429	0.189982	0.13151
chr8	98681991	98682091	3998719	0	-	0.39	(0.378,0.408]	chr8	366070	304	INTRON	INTRON	STK3	ENSG00000104375.17	ENST00000617590.1:ENST00000419617.7:ENST00000523601.5:ENST00000518165.5:ENST00000521649.5:ENST00000424861.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	30	2	1.81685	3.01624	4.21563	0.0597868	0.0315429	0.189982	0.13151
chr2	20277485	20277584	1076034	0	-	0.373737	(0.35,0.378]	chr2	114960	137	INTRON	INTRON	PUM2	ENSG00000055917.16	ENST00000338086.9:ENST00000361078.7:ENST00000440577.5	protein_coding	protein_coding	protein_coding	protein_coding	4	46	2	1.7339	3.0161450000000003	4.29839	0.0294717	0.0260366	0.133676	0.128055
chr3	185777283	185777383	1885871	0	-	0.33	(0.32,0.35]	chr3	188573	786	INTRON	INTRON	IGF2BP2	ENSG00000073792.16	ENST00000382199.7:ENST00000346192.7:ENST00000457616.6:ENST00000421047.3:ENST00000461957.5:ENST00000493302.5:ENST00000466476.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	56	2	2.84812	3.01602	3.18392	0.0147575	0.00379806	0.0983813	0.0562562
chr16	88728553	88728651	6539623	0	-	0.520408	(0.515,0.57]	chr16	633912	5	INTRON	INTRON	PIEZO1	ENSG00000103335.22	ENST00000301015.14	protein_coding	protein_coding	protein_coding	protein_coding	4	67	2	2.41022	3.01593	3.62164	0.00332441	5.41944e-4	0.0528673	0.0215026
chr1	99986140	99986240	171063	0	+	0.42	(0.408,0.44]	chr1	18525	72	INTRON	INTRON	SLC35A3:ENSG00000283761	ENSG00000117620.15:ENSG00000283761.1	ENST00000638371.1:ENST00000427993.7:ENST00000533028.8:ENST00000639221.1:ENST00000639807.1:ENST00000638336.1:ENST00000638792.1:ENST00000638968.1:ENST00000465289.6:ENST00000640715.1:ENST00000640726.1:ENST00000639040.1:ENST00000639037.1:ENST00000639994.1:ENST00000640360.1:ENST00000640178.1:ENST00000638988.1:ENST00000640732.1:ENST00000638779.1:ENST00000638929.1:ENST00000639088.1:ENST00000640600.1:ENST00000638338.1:ENST00000639171.1:ENST00000638876.1:ENST00000640238.1:ENST00000370155.9:ENST00000640357.1:ENST00000370153.6:ENST00000532693.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	49	2	2.71911	3.01584	3.31257	0.0189489	0.00198621	0.108861	0.0411469
chr1	108944423	108944514	518977	0	-	0.395604	(0.378,0.408]	chr1	60901	5	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	CLCC1	ENSG00000121940.17	ENST00000690509.1:ENST00000687328.1:ENST00000685014.1:ENST00000685540.1:ENST00000686576.1:ENST00000688070.1:ENST00000691513.1:ENST00000686821.1:ENST00000692511.1:ENST00000689479.1:ENST00000687646.1:ENST00000687998.1:ENST00000687226.1:ENST00000693336.1:ENST00000689991.1:ENST00000687591.1:ENST00000691777.1:ENST00000690756.1:ENST00000688778.1:ENST00000685104.1:ENST00000689103.1:ENST00000687734.1:ENST00000686434.1:ENST00000685497.1:ENST00000691342.1:ENST00000686776.1:ENST00000692342.1:ENST00000689351.1:ENST00000692584.1:ENST00000692775.1:ENST00000687134.1:ENST00000690707.1:ENST00000687675.1:ENST00000675018.1:ENST00000690781.1:ENST00000691556.1:ENST00000689189.1:ENST00000687099.1:ENST00000685791.1:ENST00000687865.1:ENST00000687449.1:ENST00000688285.1:ENST00000686817.1:ENST00000369968.7:ENST00000674992.1:ENST00000675001.1:ENST00000369969.7:ENST00000356970.6:ENST00000369976.6:ENST00000688610.1:ENST00000675128.1:ENST00000693089.1:ENST00000675571.1:ENST00000675650.1:ENST00000369970.8:ENST00000674561.2:ENST00000675451.1:ENST00000675654.1:ENST00000675790.1:ENST00000675584.1:ENST00000692795.1:ENST00000691731.1:ENST00000689359.1:ENST00000676392.2:ENST00000676391.2:ENST00000676454.1:ENST00000674849.1:ENST00000675956.1:ENST00000302500.5:ENST00000675508.1:ENST00000688168.1:ENST00000693673.1:ENST00000692404.1:ENST00000686078.1:ENST00000690874.1:ENST00000692732.1:ENST00000685628.1:ENST00000676306.1:ENST00000348264.6:ENST00000675247.2:ENST00000676059.2:ENST00000674527.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	171	2	2.92316	3.01584	3.10852	1.86501e-4	3.44409e-5	0.0124575	0.00467863
chr8	51879078	51879178	3946395	0	-	0.43	(0.408,0.44]	chr8	362040	83	INTRON	INTRON	PCMTD1	ENSG00000168300.14	ENST00000544451.2:ENST00000360540.9:ENST00000522514.6:ENST00000519559.1:ENST00000521344.1:ENST00000521046.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	49	2	2.71911	3.01584	3.31257	0.0189489	0.00198621	0.108861	0.0411469
chr9	5721647	5721747	4098234	0	+	0.44	(0.408,0.44]	chr9	373399	5	INTRON	INTRON	RIC1	ENSG00000107036.12	ENST00000251879.10:ENST00000414202.7:ENST00000418622.7:ENST00000545641.5:ENST00000276898.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	49	2	2.71911	3.01584	3.31257	0.0189489	0.00198621	0.108861	0.0411469
chr4	70913142	70913242	1970613	0	+	0.4	(0.378,0.408]	chr4	197571	102	INTRON	INTRON	MOB1B	ENSG00000173542.9	ENST00000502869.5:ENST00000509041.5:ENST00000309395.7:ENST00000396051.2:ENST00000511449.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	31	2	2.04292	3.015795	3.98867	0.0507	0.0326035	0.156383	0.145164
chr9	4797117	4797217	4094907	0	+	0.4	(0.378,0.408]	chr9	373155	35	INTRON	INTRON	RCL1	ENSG00000120158.12	ENST00000381750.9:ENST00000381732.3:ENST00000442869.5:ENST00000473230.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	31	2	2.04292	3.015795	3.98867	0.0507	0.0326035	0.156383	0.145164
chr9	4987120	4987220	4095841	0	+	0.38	(0.378,0.408]	chr9	373235	7	INTRON	INTRON	JAK2	ENSG00000096968.14	ENST00000636127.1:ENST00000476574.5:ENST00000381652.4	protein_coding	protein_coding	protein_coding	protein_coding	2	31	2	2.04292	3.015795	3.98867	0.0507	0.0326035	0.156383	0.145164
chr11	86007122	86007204	5014210	0	-	0.341463	(0.32,0.35]	chr11	472971	2	SS5_PROX	SS5_PROX:INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000630913.2:ENST00000528398.5:ENST00000356360.9:ENST00000534412.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	115	2	2.22834	3.01577	3.8032	0.00242823	4.69031e-4	0.0455188	0.0200452
chr5	53970115	53970215	2617505	0	-	0.22	[0,0.28]	chr5	248835	581	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	112	2	2.55703	3.01563	3.47423	0.00276846	0.00268371	0.048706	0.0464781
chr7	44796679	44796724	3315590	0	+	0.555556	(0.515,0.57]	chr7	308115	1	UTR5	UTR5:EXON_MRNA	PPIA	ENSG00000196262.15	ENST00000451562.5:ENST00000481437.5:ENST00000479021.1:ENST00000468812.6:ENST00000676977.1:ENST00000677107.1:ENST00000355968.10:ENST00000489459.5:ENST00000415933.5:ENST00000620047.5:ENST00000678643.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	18	303	2	2.79313	3.015625	3.23812	1.36886e-5	2.29771e-7	0.00292982	2.29753e-4
chr5	21384414	21384514	2324968	0	+	0.41	(0.408,0.44]	chr5	224989	421	INTRON	INTRON	GUSBP1	ENSG00000183666.18	ENST00000508260.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	2	49	2	3.00595	3.0155399999999997	3.02513	0.00781452	0.0059965	0.0759016	0.0700606
chr6	17620776	17620876	3065331	0	-	0.41	(0.408,0.44]	chr6	284764	37	INTRON	INTRON	NUP153	ENSG00000124789.12	ENST00000613258.4:ENST00000537253.5:ENST00000262077.3	protein_coding	protein_coding	protein_coding	protein_coding	2	49	2	3.00595	3.0155399999999997	3.02513	0.00781452	0.0059965	0.0759016	0.0700606
chr7	105051593	105051692	3374998	0	+	0.424242	(0.408,0.44]	chr7	315877	102	INTRON	INTRON	KMT2E	ENSG00000005483.22	ENST00000622386.2:ENST00000257745.9:ENST00000334884.9:ENST00000311117.8:ENST00000478990.5:ENST00000495267.5:ENST00000476671.5:ENST00000667857.1:ENST00000474203.5:ENST00000482560.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	97	2	1.44993	3.015485	4.58104	0.0638951	2.2066e-6	0.177824	9.30108e-4
chr19	58388480	58388537	7107592	0	+	0.280702	(0.28,0.32]	chr19	713445	1	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	RPS5	ENSG00000083845.9	ENST00000601521.5:ENST00000596314.5:ENST00000598098.5:ENST00000196551.8:ENST00000598495.5:ENST00000599909.1:ENST00000598807.1:ENST00000596046.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	60	2	2.14942	3.015435	3.88145	0.0561985	0.0143412	0.18407	0.0966737
chr1	51747518	51747606	100707	0	+	0.284091	(0.28,0.32]	chr1	13294	4	INTRON	INTRON	OSBPL9	ENSG00000117859.19	ENST00000371714.5:ENST00000428468.6:ENST00000447887.5:ENST00000495776.5:ENST00000435274.6:ENST00000453295.5:ENST00000489990.5:ENST00000484890.5:ENST00000532975.5:ENST00000534040.5:ENST00000527631.5:ENST00000531828.5:ENST00000361556.9:ENST00000473207.6:ENST00000533884.5:ENST00000481937.5:ENST00000526917.5:ENST00000462759.5:ENST00000486942.5:ENST00000467064.5:ENST00000524620.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	61	2	2.67975	3.015415	3.35108	0.0252505	0.00221345	0.12011	0.0435144
chr2	202890819	202890919	1315249	0	-	0.49	(0.476,0.515]	chr2	137954	59	INTRON	INTRON	WDR12	ENSG00000138442.11	ENST00000688520.1:ENST00000261015.5:ENST00000477727.5:ENST00000475611.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	49	2	2.87879	3.015405	3.15202	0.00999149	0.00455841	0.0879541	0.0595107
chr9	124384308	124384402	4346342	0	-	0.489362	(0.476,0.515]	chr9	399160	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PSMB7	ENSG00000136930.13	ENST00000259457.8:ENST00000498485.5:ENST00000474081.5:ENST00000478817.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	49	2	2.87879	3.015405	3.15202	0.00999149	0.00455841	0.0879541	0.0595107
chr1	95135975	95136075	166752	0	+	0.39	(0.378,0.408]	chr1	18098	144	INTRON	INTRON	TLCD4:TLCD4-RWDD3:ENSG00000231992	ENSG00000152078.10:ENSG00000271092.5:ENSG00000231992.1	ENST00000370203.9:ENST00000456991.5:ENST00000604534.5:ENST00000455656.1:ENST00000434207.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	4	44	2	1.71374	3.015365	4.31699	0.0274158	0.0250408	0.136498	0.12011
chr16	16609977	16610077	6311962	0	+	0.37	(0.35,0.378]	chr16	604098	1100	INTRON	INTRON	ENSG00000260126	ENSG00000260126.2	ENST00000567465.2	lncRNA	lncRNA	lncRNA	lncRNA	5	116	2	2.82068	3.015325	3.20997	0.00084924900000000005	3.32797e-4	0.0267232	0.0162254
chr17	61867920	61868009	6808975	0	-	0.404494	(0.378,0.408]	chr17	672652	2	CDS	CDS:UTR3:EXON_MRNA	INTS2	ENSG00000108506.13	ENST00000251334.7:ENST00000617492.4:ENST00000444766.7:ENST00000646745.1:ENST00000647009.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	91	2	2.66643	3.01527	3.36411	0.00470023	1.36472e-4	0.0600108	0.010058
chr14	63482452	63482552	5907295	0	-	0.38	(0.378,0.408]	chr14	561132	282	INTRON	INTRON	PPP2R5E	ENSG00000154001.14	ENST00000337537.8:ENST00000422769.6:ENST00000555899.1:ENST00000556484.5:ENST00000553266.5:ENST00000556878.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	51	2	2.60296	3.01523	3.4275	0.0267851	0.00126053	0.123349	0.03295
chr2	210153294	210153394	1320139	0	-	0.38	(0.378,0.408]	chr2	138425	20	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	KANSL1L	ENSG00000144445.17	ENST00000281772.14:ENST00000418791.5:ENST00000452086.5:ENST00000457374.5:ENST00000428655.5:ENST00000438563.5:ENST00000415553.1:ENST00000453904.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	51	2	2.60296	3.01523	3.4275	0.0267851	0.00126053	0.123349	0.03295
chr13	102645009	102645107	5532491	0	+	0.326531	(0.32,0.35]	chr13	528742	1	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	TPP2	ENSG00000134900.12	ENST00000376052.5:ENST00000651448.1:ENST00000376065.8:ENST00000652308.1:ENST00000651544.1:ENST00000651748.1:ENST00000650771.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	108	2	2.30766	3.0152099999999997	3.72276	0.00406148	3.96144e-4	0.0558167	0.0178616
chr17	59840008	59840106	6643735	0	+	0.377551	(0.35,0.378]	chr17	648787	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	VMP1	ENSG00000062716.13	ENST00000262291.9:ENST00000592619.5:ENST00000591877.1:ENST00000591782.1:ENST00000588617.1:ENST00000592790.1:ENST00000587470.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	56	1081	2	2.59921	3.015155	3.4311	1.94354e-6	1.41467e-7	8.47188e-4	1.78743e-4
chr6	110776233	110776333	3190065	0	-	0.53	(0.515,0.57]	chr6	297127	19	INTRON	INTRON	CDK19	ENSG00000155111.15	ENST00000323817.7:ENST00000368911.8:ENST00000413605.6:ENST00000457688.5:ENST00000460913.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	34	2	1.94493	3.015155	4.08538	0.0253843	0.0204583	0.122204	0.12011
chr7	116885332	116885432	3385592	0	+	0.48	(0.476,0.515]	chr7	317042	48	INTRON	INTRON	CAPZA2	ENSG00000198898.15	ENST00000464223.5:ENST00000484325.1:ENST00000414148.6:ENST00000361183.8:ENST00000449080.5:ENST00000426421.5:ENST00000490693.5:ENST00000417431.5:ENST00000461878.5:ENST00000464669.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	67	2	2.8863	3.014965	3.14363	0.0111679	4.25082e-4	0.0877435	0.018441
chr22	19094481	19094580	7551735	0	-	0.383838	(0.378,0.408]	chr22	771903	46	INTRON	INTRON	DGCR2	ENSG00000070413.20	ENST00000537045.5:ENST00000545799.5:ENST00000263196.12:ENST00000389262.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	76	2	2.04292	3.0149600000000003	3.987	0.0326035	1.51115e-4	0.145164	0.0112678
chr9	131136506	131136604	4215735	0	+	0.408163	(0.378,0.408]	chr9	386544	1	INTRON	INTRON	NUP214	ENSG00000126883.19	ENST00000695497.1:ENST00000695498.1:ENST00000695496.1:ENST00000695495.1:ENST00000695494.1:ENST00000695493.1:ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000525561.2:ENST00000651022.1:ENST00000695499.1:ENST00000530843.1:ENST00000530863.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	212	2	2.99117	3.014935	3.0387	6.12426e-5	2.17082e-5	0.00689672	0.00362464
chr15	58707380	58707480	6193091	0	-	0.33	(0.32,0.35]	chr15	589980	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	ADAM10	ENSG00000137845.15	ENST00000260408.8:ENST00000402627.5:ENST00000561288.1:ENST00000559053.1:ENST00000558733.5:ENST00000439637.5:ENST00000497846.5:ENST00000558004.1:ENST00000560608.5:ENST00000561149.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	59	2	2.37794	3.014905	3.65187	0.0498601	5.49434e-4	0.156383	0.0213049
chr10	130175389	130175489	4536728	0	+	0.55	(0.515,0.57]	chr10	418829	3	SS5_PROX	SS5_PROX:INTRON	GLRX3	ENSG00000108010.12	ENST00000331244.10:ENST00000481034.1:ENST00000368644.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	42	2	2.90311	3.01487	3.12663	0.0094233	0.00374498	0.0817766	0.0562234
chr16	85520381	85520480	6415034	0	+	0.454545	(0.44,0.476]	chr16	615465	1611	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	5	107	2	2.572	3.01487	3.45774	0.00173736	1.22865e-4	0.03851	0.00997185
chr7	157240195	157240295	3454976	0	+	0.53	(0.515,0.57]	chr7	323002	85	INTRON	INTRON	UBE3C	ENSG00000009335.18	ENST00000348165.10:ENST00000470408.5:ENST00000494532.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	42	2	2.90311	3.01487	3.12663	0.0094233	0.00374498	0.0817766	0.0562234
chr12	131938672	131938772	5250100	0	+	0.38	(0.378,0.408]	chr12	499262	1	SS3_PROX	SS3_PROX:INTRON	PUS1	ENSG00000177192.14	ENST00000443358.6:ENST00000322060.9:ENST00000376649.8:ENST00000542167.2:ENST00000538037.5:ENST00000535067.5:ENST00000537484.1	protein_coding	protein_coding	protein_coding	protein_coding	6	127	2	2.66558	3.014845	3.36411	6.86788e-4	1.36472e-4	0.024008	0.010058
chr7	128587365	128587465	3407922	0	+	0.38	(0.378,0.408]	chr7	318358	69	INTRON	INTRON	ENSG00000280828:ENSG00000242588	ENSG00000280828.1:ENSG00000242588.6	ENST00000479267.2:ENST00000605862.5	lncRNA	lncRNA	lncRNA:unprocessed_pseudogene	lncRNA:unprocessed_pseudogene	2	51	2	2.92665	3.0146949999999997	3.10274	0.0086017	0.00586642	0.083729	0.0668095
chr15	34180894	34180993	6131103	0	-	0.333333	(0.32,0.35]	chr15	583941	25	INTRON	INTRON	KATNBL1	ENSG00000134152.11	ENST00000256544.8:ENST00000560247.5:ENST00000540594.5:ENST00000560671.5:ENST00000557877.5:ENST00000559462.1:ENST00000560108.5:ENST00000559515.1:ENST00000559464.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	57	2	2.90786	3.01466	3.12146	0.00993008	0.00630799	0.0877296	0.0687526
chr13	51963685	51963783	5596427	0	-	0.479592	(0.476,0.515]	chr13	534946	14	INTRON	INTRON	ATP7B	ENSG00000123191.16	ENST00000242839.10:ENST00000344297.9:ENST00000674147.1:ENST00000448424.7:ENST00000634620.1:ENST00000634296.1:ENST00000400370.8:ENST00000634844.1:ENST00000673772.1:ENST00000634308.1:ENST00000418097.7:ENST00000400366.6:ENST00000635406.1:ENST00000482841.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	107	2	2.5238	3.01455	3.5053	0.00218334	9.14136e-5	0.0435144	0.00850096
chr1	16200708	16200803	381322	0	-	0.526316	(0.515,0.57]	chr1	44753	11	INTRON	INTRON	ARHGEF19	ENSG00000142632.17	ENST00000270747.8:ENST00000478117.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	21	2	2.12971	3.014135	3.89856	0.0757903	0.0280943	0.194427	0.137011
chr1	202803589	202803689	620702	0	-	0.52	(0.515,0.57]	chr1	73670	261	INTRON	INTRON	KDM5B	ENSG00000117139.18	ENST00000367265.9:ENST00000648338.1:ENST00000649542.1:ENST00000647757.1:ENST00000367264.7:ENST00000648473.1:ENST00000650569.1:ENST00000648056.1:ENST00000649770.1:ENST00000648469.1:ENST00000650417.1:ENST00000235790.9:ENST00000648738.1:ENST00000648958.1:ENST00000602511.1:ENST00000650368.1:ENST00000649200.1:ENST00000648354.1:ENST00000650493.1:ENST00000470573.5:ENST00000467487.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	21	2	2.12971	3.014135	3.89856	0.0757903	0.0280943	0.194427	0.137011
chr12	93733754	93733854	5190463	0	+	0.55	(0.515,0.57]	chr12	490913	1	SS5_PROX	SS5_PROX:INTRON	CRADD	ENSG00000169372.13	ENST00000332896.8:ENST00000549615.5:ENST00000552983.5:ENST00000552033.5:ENST00000551065.5:ENST00000548483.5:ENST00000542893.2:ENST00000547383.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	21	2	2.12971	3.014135	3.89856	0.0757903	0.0280943	0.194427	0.137011
chr15	28162593	28162693	6122392	0	-	0.53	(0.515,0.57]	chr15	583065	1	SS5_PROX	SS5_PROX:INTRON	HERC2	ENSG00000128731.18	ENST00000261609.13:ENST00000650509.1:ENST00000569772.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	21	2	2.12971	3.014135	3.89856	0.0757903	0.0280943	0.194427	0.137011
chr16	10434839	10434937	6286771	0	+	0.55102	(0.515,0.57]	chr16	601993	8	INTRON	INTRON	ATF7IP2	ENSG00000166669.14	ENST00000396559.5:ENST00000396560.6:ENST00000543967.5:ENST00000562102.6:ENST00000535850.5:ENST00000568027.5:ENST00000324570.9:ENST00000356427.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	21	2	2.12971	3.014135	3.89856	0.0757903	0.0280943	0.194427	0.137011
chr17	57322024	57322124	6633409	0	+	0.56	(0.515,0.57]	chr17	648024	113	INTRON	INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000581776.5:ENST00000674961.1:ENST00000582453.5:ENST00000675656.1:ENST00000322684.7:ENST00000579590.5:ENST00000676073.1:ENST00000675822.1:ENST00000442934.6:ENST00000579180.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	21	2	2.12971	3.014135	3.89856	0.0757903	0.0280943	0.194427	0.137011
chr17	68038292	68038391	6669366	0	+	0.545455	(0.515,0.57]	chr17	650744	4	INTRON	INTRON	KPNA2	ENSG00000182481.10	ENST00000676857.1:ENST00000676594.1:ENST00000677827.1:ENST00000676622.1:ENST00000678054.1:ENST00000583269.5:ENST00000678388.1:ENST00000677918.1:ENST00000676902.1:ENST00000677419.1:ENST00000679346.1:ENST00000677223.1:ENST00000677695.1:ENST00000679078.1:ENST00000330459.8:ENST00000584026.6:ENST00000537025.6:ENST00000677086.1:ENST00000579754.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	21	2	2.12971	3.014135	3.89856	0.0757903	0.0280943	0.194427	0.137011
chr18	12983458	12983539	6876521	0	+	0.518519	(0.515,0.57]	chr18	681319	4	INTRON	INTRON	SEH1L	ENSG00000085415.16	ENST00000262124.15:ENST00000399892.7:ENST00000592582.5:ENST00000590843.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	21	2	2.12971	3.014135	3.89856	0.0757903	0.0280943	0.194427	0.137011
chr19	9583188	9583287	7132969	0	-	0.525253	(0.515,0.57]	chr19	718825	138	INTRON	INTRON	ZNF121	ENSG00000197961.12	ENST00000320451.7:ENST00000586602.5	protein_coding	protein_coding	protein_coding	protein_coding	1	21	2	2.12971	3.014135	3.89856	0.0757903	0.0280943	0.194427	0.137011
chr2	27045041	27045141	716627	0	+	0.55	(0.515,0.57]	chr2	82815	21	INTRON	INTRON	AGBL5	ENSG00000084693.16	ENST00000421915.5	protein_coding	protein_coding	protein_coding	protein_coding	1	21	2	2.12971	3.014135	3.89856	0.0757903	0.0280943	0.194427	0.137011
chr2	101728631	101728731	836368	0	+	0.54	(0.515,0.57]	chr2	93900	297	INTRON	INTRON	MAP4K4	ENSG00000071054.17	ENST00000427603.5:ENST00000324219.9:ENST00000350878.9:ENST00000425019.6:ENST00000625522.3:ENST00000413150.6:ENST00000634702.1:ENST00000456652.5:ENST00000347699.8:ENST00000417294.5	protein_coding	protein_coding	protein_coding	protein_coding	1	21	2	2.12971	3.014135	3.89856	0.0757903	0.0280943	0.194427	0.137011
chr22	19808437	19808536	7555159	0	-	0.565657	(0.515,0.57]	chr22	772425	13	INTRON	INTRON	GNB1L	ENSG00000185838.14	ENST00000329517.11:ENST00000403325.5:ENST00000405009.5:ENST00000460402.5:ENST00000481086.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	21	2	2.12971	3.014135	3.89856	0.0757903	0.0280943	0.194427	0.137011
chr22	41119907	41120007	7521768	0	+	0.52	(0.515,0.57]	chr22	768525	17	INTRON	INTRON	EP300	ENSG00000100393.14	ENST00000263253.9:ENST00000674155.1:ENST00000634787.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	21	2	2.12971	3.014135	3.89856	0.0757903	0.0280943	0.194427	0.137011
chr6	15395235	15395334	2824440	0	+	0.464646	(0.44,0.476]	chr6	265198	206	INTRON	INTRON	JARID2	ENSG00000008083.14	ENST00000341776.7:ENST00000397311.4	protein_coding	protein_coding	protein_coding	protein_coding	4	87	2	2.74546	3.014135	3.28281	0.00326603	2.0352e-4	0.0508595	0.0124395
chr7	23428379	23428478	3503245	0	-	0.555556	(0.515,0.57]	chr7	326906	92	INTRON	INTRON	IGF2BP3	ENSG00000136231.14	ENST00000258729.8:ENST00000421467.6:ENST00000468263.5:ENST00000479504.5:ENST00000466809.6:ENST00000491719.5:ENST00000465058.5:ENST00000469723.5:ENST00000476938.5:ENST00000468005.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	21	2	2.12971	3.014135	3.89856	0.0757903	0.0280943	0.194427	0.137011
chr9	130697894	130697983	4213750	0	+	0.516854	(0.515,0.57]	chr9	386396	4	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	EXOSC2	ENSG00000130713.17	ENST00000491115.7:ENST00000686102.1:ENST00000691284.1:ENST00000685137.1:ENST00000495699.3:ENST00000688967.1:ENST00000691104.1:ENST00000691926.1:ENST00000693435.1:ENST00000688258.1:ENST00000372358.10:ENST00000546165.6:ENST00000372352.7:ENST00000687420.1:ENST00000693011.1:ENST00000687051.1:ENST00000691425.1:ENST00000693610.1:ENST00000490641.5:ENST00000692794.1:ENST00000689890.1:ENST00000688350.1:ENST00000686106.1:ENST00000372351.7:ENST00000372350.7:ENST00000685277.1:ENST00000463488.1:ENST00000688364.1:ENST00000689662.1:ENST00000430138.7:ENST00000691956.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	21	2	2.12971	3.014135	3.89856	0.0757903	0.0280943	0.194427	0.137011
chr9	136912177	136912276	4222451	0	+	0.555556	(0.515,0.57]	chr9	387832	18	INTRON	INTRON	TRAF2	ENSG00000127191.18	ENST00000247668.7:ENST00000482854.5:ENST00000469701.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	21	2	2.12971	3.014135	3.89856	0.0757903	0.0280943	0.194427	0.137011
chr21	10486626	10486724	7368871	0	+	0.428571	(0.408,0.44]	chr21	752016	5	INTRON	INTRON	BAGE2:ENSG00000273840	ENSG00000187172.15:ENSG00000273840.1	ENST00000470054.5:ENST00000496773.1:ENST00000612267.1	lncRNA	lncRNA	lncRNA:transcribed_unprocessed_pseudogene	lncRNA:processed_transcript:transcribed_unprocessed_pseudogene	3	36	2	1.69566	3.01402	4.33238	0.0453922	0.0218901	0.164236	0.11491
chr4	77808377	77808477	2166926	0	-	0.51	(0.476,0.515]	chr4	213719	316	INTRON	INTRON	CNOT6L	ENSG00000138767.14	ENST00000504123.7:ENST00000649644.1:ENST00000515506.6:ENST00000512485.6:ENST00000504804.7:ENST00000506166.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	52	2	2.3223	3.013915	3.70553	0.0519312	3.44823e-4	0.159306	0.0165103
chr2	144402178	144402274	1240605	0	-	0.416667	(0.408,0.44]	chr2	131670	10	EXON_MRNA	EXON_MRNA:INTRON	ZEB2	ENSG00000169554.23	ENST00000636471.1:ENST00000627532.3:ENST00000638128.1:ENST00000637304.1:ENST00000636179.1:ENST00000636820.1:ENST00000637045.1:ENST00000636413.1:ENST00000638007.1:ENST00000638087.1:ENST00000419938.5:ENST00000409487.7:ENST00000440875.6:ENST00000636732.2:ENST00000636026.2:ENST00000675069.1:ENST00000689298.1:ENST00000539609.7:ENST00000558170.6:ENST00000303660.8:ENST00000675145.1:ENST00000427902.5:ENST00000637267.2:ENST00000392861.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	89	2	2.906	3.0138550000000004	3.12171	0.00131817	6.63666e-4	0.0333932	0.0234815
chr12	98663597	98663694	5199315	0	+	0.247423	[0,0.28]	chr12	491922	4	INTRON	INTRON	APAF1	ENSG00000120868.14	ENST00000551964.6:ENST00000359972.6:ENST00000333991.5:ENST00000357310.5:ENST00000552268.5:ENST00000550527.5:ENST00000547045.5:ENST00000549007.1	protein_coding	protein_coding	protein_coding	protein_coding	4	120	2	1.62991	3.0138149999999997	4.39772	0.0671202	2.3634e-5	0.183051	0.00380885
chr18	2663457	2663557	6864937	0	+	0.31	(0.28,0.32]	chr18	679940	68	INTRON	INTRON	SMCHD1	ENSG00000101596.17	ENST00000320876.11:ENST00000688342.1:ENST00000684915.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	49	2	1.51776	3.013785	4.50981	0.0528371	0.0275554	0.178899	0.123904
chrX	119788733	119788830	7873944	0	-	0.505155	(0.476,0.515]	chrX	801867	14	INTRON	INTRON	RPL39	ENSG00000198918.8	ENST00000361575.4:ENST00000468844.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	46	2	1.50151	3.0137549999999997	4.526	0.054954	0.00699701	0.165463	0.0754576
chr10	48320025	48320125	4431122	0	+	0.49	(0.476,0.515]	chr10	408563	114	INTRON	INTRON	MAPK8	ENSG00000107643.17	ENST00000395611.7:ENST00000432379.5:ENST00000374189.6:ENST00000429041.6:ENST00000374179.8:ENST00000426557.5:ENST00000476134.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	36	2	1.68092	3.0137	4.34648	0.0474026	0.0193566	0.169265	0.108861
chr14	103913579	103913677	5972384	0	-	0.469388	(0.44,0.476]	chr14	567708	10	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	ATP5MJ	ENSG00000156411.10	ENST00000286953.8:ENST00000554880.5:ENST00000555030.5:ENST00000414262.6:ENST00000553430.5:ENST00000557040.5:ENST00000554287.1:ENST00000553449.1:ENST00000554089.5:ENST00000554713.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	120	2	2.54687	3.013655	3.48044	0.0011	6.78832e-5	0.030486	0.00682671
chr11	68500252	68500352	4817728	0	+	0.41	(0.408,0.44]	chr11	448907	391	INTRON	INTRON	PPP6R3	ENSG00000110075.15	ENST00000530427.5:ENST00000528635.5:ENST00000529907.5:ENST00000533127.5:ENST00000534534.5:ENST00000529344.5:ENST00000524845.5:ENST00000393800.7:ENST00000265637.8:ENST00000524904.5:ENST00000393801.7:ENST00000265636.9:ENST00000529710.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	105	2	3.0101	3.013625	3.01715	0.00109848	1.77739e-4	0.0304585	0.0116289
chr10	73247341	73247422	4648953	0	-	0.691358	(0.57,1]	chr10	427703	1	EXON_LNCRNA	EXON_LNCRNA	ENSG00000288559	ENSG00000288559.1	ENST00000512551.1	lncRNA	lncRNA	lncRNA	lncRNA	2	27	2	2.99729	3.01348	3.02967	0.00538023	0.00471306	0.0642754	0.0631419
chr9	37321261	37321361	4119674	0	+	0.52	(0.515,0.57]	chr9	375411	152	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000461038.5:ENST00000488607.5:ENST00000463625.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	42	2	2.83501	3.013395	3.19178	0.0117686	0.00289534	0.0894475	0.0494641
chr1	11024317	11024416	24685	0	+	0.464646	(0.44,0.476]	chr1	2610	11	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	TARDBP	ENSG00000120948.19	ENST00000240185.8:ENST00000614757.4:ENST00000473869.5:ENST00000611136.4:ENST00000477447.6:ENST00000612542.1:ENST00000620505.1:ENST00000611008.4:ENST00000613177.1:ENST00000622108.1:ENST00000496840.1:ENST00000480464.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	100	2	1.892	3.0132899999999996	4.13458	0.00935701	6.18626e-5	0.0858596	0.00694613
chr15	81865827	81865927	6243962	0	-	0.52	(0.515,0.57]	chr15	595871	17	INTRON	INTRON	ENSG00000259692	ENSG00000259692.6	ENST00000560054.6:ENST00000560097.1:ENST00000559299.2:ENST00000664621.1	lncRNA	lncRNA	lncRNA	lncRNA	2	42	2	2.96814	3.013265	3.05839	0.00756432	0.00485936	0.0749063	0.0640618
chr7	73452684	73452783	3554388	0	-	0.424242	(0.408,0.44]	chr7	330741	13	INTRON	INTRON	BAZ1B	ENSG00000009954.11	ENST00000339594.9:ENST00000404251.1	protein_coding	protein_coding	protein_coding	protein_coding	4	78	2	2.46587	3.0132199999999996	3.56057	0.00280622	9.67143e-4	0.0488779	0.0282401
chr3	33851587	33851687	1394938	0	+	0.45	(0.44,0.476]	chr3	146115	56	INTRON	INTRON	PDCD6IP	ENSG00000170248.15	ENST00000457054.6:ENST00000648706.1:ENST00000307296.8:ENST00000465122.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	132	2	2.61256	3.013195	3.41383	2.78737e-4	1.54313e-4	0.0148795	0.0113252
chr1	167943828	167943927	248560	0	+	0.464646	(0.44,0.476]	chr1	29536	62	INTRON	INTRON	DCAF6	ENSG00000143164.16	ENST00000450548.5:ENST00000470919.5:ENST00000432587.6:ENST00000367843.7:ENST00000470721.5:ENST00000367840.4:ENST00000312263.10:ENST00000455334.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	109	2	1.73299	3.01315	4.29331	0.014376	1.36744e-5	0.0968323	0.00275994
chr4	128864134	128864233	2044821	0	+	0.454545	(0.44,0.476]	chr4	203046	20	UTR3	UTR3:EXON_MRNA:INTRON	JADE1	ENSG00000077684.16	ENST00000226319.11:ENST00000452328.6:ENST00000512960.5:ENST00000610919.4:ENST00000413543.6:ENST00000611140.4	protein_coding	protein_coding	protein_coding	protein_coding	3	68	2	2.88062	3.013105	3.14559	0.00384923	0.001878	0.0562562	0.039073
chr12	76836667	76836767	5174593	0	+	0.36	(0.35,0.378]	chr12	490143	78	INTRON	INTRON	ZDHHC17	ENSG00000186908.15	ENST00000426126.7	protein_coding	protein_coding	protein_coding	protein_coding	2	31	2	1.82887	3.012985	4.1971	0.0584878	0.0367539	0.189395	0.138959
chr20	63995582	63995682	7301528	0	+	0.37	(0.35,0.378]	chr20	743199	1	SS5_PROX	SS5_PROX:INTRON	PRPF6	ENSG00000101161.8	ENST00000266079.5	protein_coding	protein_coding	protein_coding	protein_coding	2	31	2	1.82887	3.012985	4.1971	0.0584878	0.0367539	0.189395	0.138959
chr3	47150439	47150539	1681469	0	-	0.37	(0.35,0.378]	chr3	171624	234	INTRON	INTRON	SETD2	ENSG00000181555.22	ENST00000691544.1:ENST00000638947.2:ENST00000409792.4:ENST00000412450.1	protein_coding	protein_coding	protein_coding	protein_coding	2	31	2	1.82887	3.012985	4.1971	0.0584878	0.0367539	0.189395	0.138959
chr7	157380380	157380478	3455749	0	+	0.377551	(0.35,0.378]	chr7	323103	24	EXON_MRNA	EXON_MRNA:INTRON	DNAJB6	ENSG00000105993.15	ENST00000441561.5:ENST00000429029.6:ENST00000262177.9:ENST00000417758.5:ENST00000459889.5:ENST00000443280.5:ENST00000441291.5:ENST00000412557.5:ENST00000634080.1:ENST00000468928.5:ENST00000465908.5:ENST00000487480.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	31	2	1.82887	3.012985	4.1971	0.0584878	0.0367539	0.189395	0.138959
chr17	70118970	70119070	6828638	0	-	0.38	(0.378,0.408]	chr17	675009	458	INTRON	INTRON	ENSG00000230258	ENSG00000230258.6	ENST00000435112.5	lncRNA	lncRNA	lncRNA	lncRNA	2	52	2	2.46373	3.012905	3.56208	0.0382831	6.94246e-4	0.141795	0.0240761
chr16	9100387	9100487	6285459	0	+	0.4	(0.378,0.408]	chr16	601924	70	INTRON	INTRON	C16orf72	ENSG00000182831.12	ENST00000327827.12:ENST00000574285.2	protein_coding	protein_coding	protein_coding	protein_coding	5	92	2	2.28793	3.01288	3.73783	0.00291235	4.8181e-4	0.0494641	0.0203411
chr3	47129460	47129560	1681259	0	-	0.38	(0.378,0.408]	chr3	171624	24	INTRON	INTRON	SETD2	ENSG00000181555.22	ENST00000691544.1:ENST00000638947.2:ENST00000409792.4:ENST00000412450.1	protein_coding	protein_coding	protein_coding	protein_coding	3	67	2	2.78867	3.012875	3.23708	0.00365053	0.00226991	0.0535094	0.0437013
chrX	66224324	66224424	7673307	0	+	0.41	(0.408,0.44]	chrX	785355	157	INTRON	INTRON	HEPH	ENSG00000089472.18	ENST00000519389.6:ENST00000683049.1:ENST00000458621.6:ENST00000684042.1:ENST00000343002.7:ENST00000336279.9:ENST00000441993.7:ENST00000419594.6:ENST00000682362.1:ENST00000425114.2:ENST00000682927.1:ENST00000683420.1:ENST00000684071.1:ENST00000684625.1:ENST00000684603.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	41	2	1.69172	3.01286	4.334	0.0486032	0.011982	0.153946	0.0962115
chr1	45907388	45907488	94852	0	+	0.22	[0,0.28]	chr1	12702	246	INTRON	INTRON	MAST2	ENSG00000086015.23	ENST00000470809.1:ENST00000361297.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	70	2	2.90797	3.012835	3.1177	0.0118539	0.00849154	0.0962115	0.0778788
chr1	174889875	174889974	264454	0	+	0.434343	(0.408,0.44]	chr1	30911	119	INTRON	INTRON	RABGAP1L	ENSG00000152061.24	ENST00000251507.8:ENST00000681986.1:ENST00000529145.6:ENST00000325589.9:ENST00000469553.6:ENST00000367687.5:ENST00000347255.6:ENST00000489615.5:ENST00000478442.5:ENST00000465412.5:ENST00000486220.5:ENST00000392064.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	65	2	2.82511	3.012725	3.20034	0.00398025	0.00189528	0.0549214	0.0402736
chr16	67193897	67193977	6366756	0	+	0.425	(0.408,0.44]	chr16	611571	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	E2F4	ENSG00000205250.9	ENST00000379378.8:ENST00000567007.5:ENST00000565849.5:ENST00000568839.5:ENST00000569573.1:ENST00000561904.5:ENST00000564718.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	66	2	3.00595	3.0126850000000003	3.01942	0.00781452	7.74413e-4	0.0759016	0.0256083
chr19	46742970	46743070	7195235	0	-	0.42	(0.408,0.44]	chr19	728954	23	INTRON	INTRON	STRN4	ENSG00000090372.15	ENST00000391910.7:ENST00000263280.11:ENST00000539396.5:ENST00000435164.6:ENST00000594704.5:ENST00000593979.6:ENST00000597063.6:ENST00000596012.2:ENST00000600710.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	65	2	2.69457	3.01262	3.33067	0.00331036	0.0024459	0.0527031	0.0445752
chr3	167728235	167728333	1853984	0	-	0.346939	(0.32,0.35]	chr3	186326	24	INTRON	INTRON	PDCD10	ENSG00000114209.15	ENST00000392750.7:ENST00000473645.6:ENST00000497056.6:ENST00000461494.5:ENST00000470131.5:ENST00000475915.6:ENST00000487947.6:ENST00000471885.5:ENST00000462725.6:ENST00000492139.5:ENST00000483451.5:ENST00000494502.6:ENST00000464360.5:ENST00000481136.1:ENST00000487678.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	56	2	2.74415	3.01261	3.28107	0.0198267	0.00262488	0.109608	0.0470772
chr8	51844211	51844311	3946039	0	-	0.35	(0.32,0.35]	chr8	362016	42	INTRON	INTRON	PCMTD1	ENSG00000168300.14	ENST00000544451.2:ENST00000360540.9:ENST00000522514.6:ENST00000519559.1:ENST00000519554.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	56	2	2.74415	3.01261	3.28107	0.0198267	0.00262488	0.109608	0.0470772
chr1	29036617	29036714	60188	0	+	0.329897	(0.32,0.35]	chr1	7697	3	INTRON	INTRON	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000647918.1:ENST00000646800.1:ENST00000644342.1:ENST00000646189.1:ENST00000482464.6:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000646260.1:ENST00000373798.5:ENST00000644600.1:ENST00000649674.1:ENST00000643173.1:ENST00000343067.9:ENST00000644780.1:ENST00000650265.1:ENST00000648181.1:ENST00000643604.1:ENST00000648891.1:ENST00000373797.2:ENST00000349460.9:ENST00000645184.1:ENST00000645111.1:ENST00000643302.1:ENST00000645999.1:ENST00000642643.1:ENST00000636666.1:ENST00000644848.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	34	2	2.07985	3.01257	3.94529	0.0693433	0.0303092	0.184298	0.143025
chr4	138181627	138181711	2245215	0	-	0.333333	(0.32,0.35]	chr4	219465	5	INTRON	INTRON	SLC7A11	ENSG00000151012.13	ENST00000280612.9:ENST00000509248.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	34	2	2.07985	3.01257	3.94529	0.0693433	0.0303092	0.184298	0.143025
chr17	82917399	82917497	6695905	0	+	0.326531	(0.32,0.35]	chr17	655036	34	INTRON	INTRON	TBCD	ENSG00000141556.22	ENST00000682479.1:ENST00000682722.1:ENST00000684464.1:ENST00000684544.1:ENST00000681983.1:ENST00000684361.1:ENST00000683184.1:ENST00000683282.1:ENST00000684408.1:ENST00000355528.9:ENST00000683444.1:ENST00000684776.1:ENST00000683041.1:ENST00000684760.1:ENST00000684349.1:ENST00000682213.1:ENST00000539345.6:ENST00000684000.1:ENST00000684188.1:ENST00000684429.1:ENST00000682610.1:ENST00000683821.1:ENST00000682654.1:ENST00000576160.6:ENST00000571712.5:ENST00000576996.5:ENST00000683584.1:ENST00000682099.1:ENST00000684559.1:ENST00000576760.5:ENST00000683839.1:ENST00000574975.5:ENST00000572953.5:ENST00000571796.5:ENST00000682315.1:ENST00000574422.1:ENST00000576677.6:ENST00000571618.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	56	2	2.9451	3.0124250000000004	3.07975	0.011051	0.00554235	0.0873897	0.0674105
chr9	91920266	91920366	4284968	0	-	0.47	(0.44,0.476]	chr9	393921	332	INTRON	INTRON	ROR2	ENSG00000169071.15	ENST00000375715.5:ENST00000375708.4:ENST00000495386.5:ENST00000546883.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	78	2	2.67227	3.01227	3.35227	0.0022005699999999998	0.0010793	0.0417893	0.0300133
chr4	126692065	126692165	2237630	0	-	0.3	(0.28,0.32]	chr4	219023	2266	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	4	115	2	2.40458	3.012195	3.61981	0.0141047	5.16208e-5	0.0959618	0.00585477
chr14	69767380	69767480	5777159	0	+	0.58	(0.57,1]	chr14	547340	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	SRSF5	ENSG00000100650.16	ENST00000553521.5:ENST00000554465.5:ENST00000394366.6:ENST00000553369.5:ENST00000553548.5:ENST00000557435.1:ENST00000557154.6:ENST00000553635.5:ENST00000556184.5:ENST00000557460.5:ENST00000556587.5:ENST00000555547.5:ENST00000556436.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	103	2	2.6425	3.012185	3.38187	6.9173e-5	1.93556e-6	0.00689289	9.48354e-4
chr1	26706230	26706330	51273	0	+	0.43	(0.408,0.44]	chr1	6542	83	INTRON	INTRON	ARID1A	ENSG00000117713.21	ENST00000430799.7:ENST00000324856.13:ENST00000637465.1:ENST00000457599.6	protein_coding	protein_coding	protein_coding	protein_coding	6	99	2	2.17577	3.01218	3.84859	0.00269594	2.66911e-4	0.0479115	0.0149989
chr2	95829589	95829688	1178064	0	-	0.575758	(0.57,1]	chr2	125708	15	EXON_LNCRNA	EXON_LNCRNA:INTRON	LINC00342	ENSG00000232931.6	ENST00000662121.1:ENST00000661329.1	lncRNA	lncRNA	lncRNA	lncRNA	5	51	2	2.62103	3.01218	3.40333	9.20604e-4	4.01771e-4	0.0278392	0.0185763
chr10	63202062	63202160	4632738	0	-	0.510204	(0.476,0.515]	chr10	426179	10	INTRON	INTRON	JMJD1C	ENSG00000171988.20	ENST00000399262.7:ENST00000402544.5:ENST00000542921.5:ENST00000327520.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	50	2	2.48527	3.01211	3.53895	0.03496	0.00075485700000000005	0.13747500000000001	0.0251966
chr3	129179805	129179904	1815289	0	-	0.494949	(0.476,0.515]	chr3	182484	77	INTRON	INTRON	CNBP	ENSG00000169714.17	ENST00000422453.7:ENST00000502976.5:ENST00000451728.6:ENST00000446936.6:ENST00000504813.5:ENST00000500450.6:ENST00000441626.6:ENST00000502372.1:ENST00000512338.1:ENST00000507573.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	104	2	2.72421	3.012095	3.29998	0.00107964	1.88247e-4	0.0302522	0.011951
chr1	179862995	179863094	593319	0	-	0.454545	(0.44,0.476]	chr1	71105	41	UTR3	UTR3:EXON_MRNA:INTRON	TOR1AIP2	ENSG00000169905.13	ENST00000367612.7:ENST00000609928.6:ENST00000482587.5	protein_coding	protein_coding	protein_coding	protein_coding	4	78	2	2.30673	3.01204	3.71735	0.0055175	4.72844e-4	0.0672816	0.0201458
chr15	63611950	63612050	6198576	0	-	0.47	(0.44,0.476]	chr15	590995	3	SS5_PROX	SS5_PROX:INTRON	HERC1	ENSG00000103657.14	ENST00000443617.7	protein_coding	protein_coding	protein_coding	protein_coding	3	65	2	2.47339	3.012035	3.55068	0.0090196	7.06861e-4	0.080367	0.0241881
chr3	179325134	179325228	1566776	0	+	0.542553	(0.515,0.57]	chr3	162018	2	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	ZNF639	ENSG00000121864.10	ENST00000496856.6:ENST00000491818.5:ENST00000481587.5:ENST00000326361.7:ENST00000466264.5	protein_coding	protein_coding	protein_coding	protein_coding	5	78	2	2.261	3.01197	3.76294	0.00333544	2.08636e-4	0.0512081	0.0125926
chr2	108639434	108639534	846906	0	+	0.44	(0.408,0.44]	chr2	94698	176	INTRON	INTRON	LIMS1	ENSG00000169756.17	ENST00000695516.1:ENST00000544547.6:ENST00000695517.1:ENST00000695518.1:ENST00000695519.1:ENST00000332345.10:ENST00000695520.1:ENST00000393310.5:ENST00000695521.1:ENST00000410093.5:ENST00000449684.6:ENST00000409441.5:ENST00000422797.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	46	2	1.40374	3.011915	4.62009	0.0721345	0.00504155	0.187433	0.0646039
chr16	67895065	67895165	6368856	0	+	0.5	(0.476,0.515]	chr16	612023	13	INTRON	INTRON	PSKH1	ENSG00000159792.10	ENST00000291041.6:ENST00000570631.5:ENST00000575198.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	34	2	2.05154	3.011775	3.97201	0.0336015	0.030904	0.143385	0.134145
chr4	73173683	73173783	2159974	0	-	0.39	(0.378,0.408]	chr4	212788	42	INTRON	INTRON	ANKRD17	ENSG00000132466.20	ENST00000358602.9:ENST00000558247.5:ENST00000330838.10:ENST00000509867.6:ENST00000561029.1:ENST00000559367.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	67	2	2.82967	3.0116750000000003	3.19368	0.00426861	0.00189968	0.0573912	0.0402736
chr17	30129034	30129134	6587512	0	+	0.31	(0.28,0.32]	chr17	640563	9	INTRON	INTRON	NSRP1	ENSG00000126653.18	ENST00000540900.7:ENST00000612959.4:ENST00000247026.10:ENST00000577289.6:ENST00000584154.5:ENST00000394826.8:ENST00000475652.5:ENST00000584317.5:ENST00000583301.5:ENST00000585881.5:ENST00000467446.6:ENST00000580103.6:ENST00000581048.5:ENST00000588614.1:ENST00000589608.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	62	2	2.51488	3.0116199999999997	3.50836	0.0380957	0.00117393	0.141678	0.0316446
chr22	40770277	40770369	7589873	0	-	0.402174	(0.378,0.408]	chr22	777131	8	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	SLC25A17	ENSG00000100372.15	ENST00000544408.5:ENST00000435456.7:ENST00000491545.5:ENST00000263255.10:ENST00000402844.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	67	2	2.70298	3.01157	3.32016	0.00325723	0.00268328	0.0524329	0.0464781
chr12	120133990	120134090	5432587	0	-	0.52	(0.515,0.57]	chr12	519091	3	SS5_PROX	SS5_PROX:INTRON	GCN1	ENSG00000089154.11	ENST00000300648.7	protein_coding	protein_coding	protein_coding	protein_coding	3	56	2	2.57298	3.0115600000000002	3.45014	0.00506495	0.00116948	0.0646039	0.0312127
chr9	137671642	137671740	4224007	0	+	0.530612	(0.515,0.57]	chr9	388187	38	INTRON	INTRON	EHMT1	ENSG00000181090.21	ENST00000462484.5:ENST00000371394.6:ENST00000630754.2:ENST00000460843.6:ENST00000626216.2:ENST00000629335.2:ENST00000637335.1:ENST00000636376.1:ENST00000637655.1:ENST00000636027.1:ENST00000492232.5:ENST00000460486.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	56	2	2.57298	3.0115600000000002	3.45014	0.00506495	0.00116948	0.0646039	0.0312127
chr7	30631248	30631347	3301823	0	+	0.424242	(0.408,0.44]	chr7	306608	27	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	GARS1	ENSG00000106105.15	ENST00000675051.1:ENST00000470392.2:ENST00000674643.1:ENST00000675529.1:ENST00000674807.1:ENST00000675810.1:ENST00000676088.1:ENST00000674815.1:ENST00000676403.1:ENST00000485784.2:ENST00000676210.1:ENST00000389266.8:ENST00000675693.1:ENST00000676259.1:ENST00000675651.1:ENST00000674616.1:ENST00000674737.1:ENST00000675859.1:ENST00000676140.1:ENST00000674969.1:ENST00000676164.1:ENST00000675886.1:ENST00000444666.6:ENST00000675587.1:ENST00000674851.1:ENST00000675863.1:ENST00000465748.2:ENST00000496643.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	83	2	3.00595	3.0115499999999997	3.01715	0.00781452	1.77739e-4	0.0759016	0.0116289
chr1	174020996	174021096	588032	0	-	0.35	(0.32,0.35]	chr1	70766	49	INTRON	INTRON	RC3H1	ENSG00000135870.12	ENST00000367696.7	protein_coding	protein_coding	protein_coding	protein_coding	9	215	2	2.86992	3.01154	3.15316	8.3284e-5	7.85807e-5	0.0079464	0.00768173
chr7	99565104	99565204	3362759	0	+	0.31	(0.28,0.32]	chr7	314147	5	INTRON	INTRON	ZNF655	ENSG00000197343.11	ENST00000626122.2:ENST00000454654.5:ENST00000412636.5:ENST00000252713.9:ENST00000449244.5:ENST00000493947.5:ENST00000425063.5:ENST00000493277.5:ENST00000422164.5:ENST00000427931.5:ENST00000422647.5:ENST00000424881.5:ENST00000394163.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	84	2	2.71415	3.01154	3.30893	0.005045	0.00260504	0.0621586	0.0470772
chr1	19321536	19321635	39172	0	+	0.424242	(0.408,0.44]	chr1	4691	33	INTRON	INTRON	SLC66A1	ENSG00000040487.13	ENST00000375153.8:ENST00000375155.7:ENST00000469076.5:ENST00000400548.6:ENST00000497827.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	24	2	2.18807	3.011505	3.83494	0.0708044	0.0411442	0.184528	0.161534
chr16	67848962	67849062	6368441	0	+	0.44	(0.408,0.44]	chr16	611903	10	INTRON	INTRON	NUTF2	ENSG00000102898.12	ENST00000568390.5:ENST00000219169.9:ENST00000567105.5:ENST00000568233.5:ENST00000569436.6:ENST00000568396.2:ENST00000570026.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	24	2	2.18807	3.011505	3.83494	0.0708044	0.0411442	0.184528	0.161534
chr5	145769796	145769896	2745983	0	-	0.41	(0.408,0.44]	chr5	258689	44	INTRON	INTRON	PRELID2	ENSG00000186314.12	ENST00000510594.1:ENST00000683046.1:ENST00000334744.8:ENST00000394450.6:ENST00000505416.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	24	2	2.18807	3.011505	3.83494	0.0708044	0.0411442	0.184528	0.161534
chr7	65970866	65970963	3538106	0	-	0.412371	(0.408,0.44]	chr7	330006	1	INTRON	INTRON	GUSB	ENSG00000169919.17	ENST00000304895.9:ENST00000466883.5:ENST00000430730.5:ENST00000447929.5:ENST00000421103.5:ENST00000462371.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	24	2	2.18807	3.011505	3.83494	0.0708044	0.0411442	0.184528	0.161534
chr1	21748868	21748965	396516	0	-	0.443299	(0.44,0.476]	chr1	47316	2	INTRON	INTRON	USP48	ENSG00000090686.16	ENST00000400301.5:ENST00000308271.14:ENST00000529637.5:ENST00000421625.6	protein_coding	protein_coding	protein_coding	protein_coding	16	254	2	2.37357	3.01136	3.64915	7.0293e-5	7.4025e-6	0.00694412	0.00205092
chr22	19120229	19120329	7551993	0	-	0.54	(0.515,0.57]	chr22	771903	304	INTRON	INTRON	DGCR2	ENSG00000070413.20	ENST00000537045.5:ENST00000545799.5:ENST00000263196.12:ENST00000389262.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	43	2	1.73313	3.01117	4.28921	0.0258496	0.00990051	0.121322	0.0877296
chr2	38564337	38564437	1099377	0	-	0.43	(0.408,0.44]	chr2	117894	1	SS3_PROX	SS3_PROX:INTRON	HNRNPLL	ENSG00000143889.16	ENST00000449105.8:ENST00000409636.5:ENST00000358367.8:ENST00000608859.5:ENST00000378915.7:ENST00000272249.7:ENST00000409328.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	50	2	2.51492	3.011115	3.50731	0.0329839	8.5918e-4	0.133816	0.0265787
chr22	16802893	16802992	7546429	0	-	0.323232	(0.32,0.35]	chr22	771321	25	INTRON	INTRON	XKR3	ENSG00000172967.8	ENST00000331428.5:ENST00000684488.1	protein_coding	protein_coding	protein_coding	protein_coding	3	75	2	2.85974	3.011055	3.16237	0.00550276	0.00186579	0.0648867	0.0399675
chr9	5045913	5046013	4096433	0	+	0.37	(0.35,0.378]	chr9	373255	10	INTRON	INTRON	JAK2	ENSG00000096968.14	ENST00000636127.1:ENST00000381652.4	protein_coding	protein_coding	protein_coding	protein_coding	6	137	2	2.7342	3.0109950000000003	3.28779	0.00125312	4.28708e-5	0.0323608	0.00530415
chr2	85544715	85544809	821624	0	+	0.425532	(0.408,0.44]	chr2	91572	11	UTR3	UTR3:EXON_MRNA	MAT2A	ENSG00000168906.13	ENST00000306434.8	protein_coding	protein_coding	protein_coding	protein_coding	50	959	2	2.61592	3.010945	3.40597	1.67737e-6	5.27754e-8	7.82975e-4	9.24063e-5
chr9	15481664	15481762	4235782	0	-	0.316327	(0.28,0.32]	chr9	389300	16	INTRON	INTRON	PSIP1	ENSG00000164985.15	ENST00000380738.8:ENST00000380733.9:ENST00000380716.8:ENST00000380715.5:ENST00000397519.6	protein_coding	protein_coding	protein_coding	protein_coding	4	51	2	1.68411	3.0108800000000002	4.33765	0.039714	0.0323543	0.145026	0.143072
chr2	161386169	161386268	901897	0	+	0.282828	(0.28,0.32]	chr2	99731	2	INTRON	INTRON	PSMD14	ENSG00000115233.12	ENST00000409682.8:ENST00000477232.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	46	2	1.98806	3.010755	4.03345	0.0704058	0.0199553	0.184298	0.120668
chr15	92890208	92890307	6103581	0	+	0.616162	(0.57,1]	chr15	581369	15	INTRON	INTRON	CHASERR:ENSG00000279765	ENSG00000272888.8:ENSG00000279765.3	ENST00000653163.1:ENST00000557682.6:ENST00000556895.5:ENST00000554894.5:ENST00000629685.2:ENST00000554133.5:ENST00000630790.1:ENST00000555520.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	4	42	2	2.39221	3.010655	3.6291	0.00352602	3.02868e-4	0.0546236	0.0160895
chr20	35493935	35494023	7262403	0	+	0.420455	(0.408,0.44]	chr20	737902	4	SS5_PROX	SS5_PROX:INTRON	CEP250	ENSG00000126001.16	ENST00000397527.6	protein_coding	protein_coding	protein_coding	protein_coding	2	50	2	2.82042	3.01038	3.20034	0.0120121	0.00398025	0.0962115	0.0549214
chr1	40726383	40726482	82712	0	+	0.515152	(0.476,0.515]	chr1	10736	22	INTRON	INTRON	NFYC	ENSG00000066136.21	ENST00000467203.5:ENST00000424419.6:ENST00000427410.6:ENST00000447388.8:ENST00000425457.6:ENST00000453631.5:ENST00000456393.6:ENST00000372654.5:ENST00000534399.5:ENST00000372653.5:ENST00000372669.8:ENST00000372652.5:ENST00000372651.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	48	2	2.8863	3.0100949999999997	3.13389	0.0111679	0.00405473	0.0877435	0.0578376
chr10	67887833	67887933	4440432	0	+	0.5	(0.476,0.515]	chr10	409427	3	SS5_PROX	SS5_PROX:INTRON	SIRT1	ENSG00000096717.12	ENST00000212015.11:ENST00000432464.5:ENST00000497639.5:ENST00000473922.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	48	2	2.8863	3.0100949999999997	3.13389	0.0111679	0.00405473	0.0877435	0.0578376
chr4	10103595	10103695	2107293	0	-	0.5	(0.476,0.515]	chr4	208481	3	SS5_PROX	SS5_PROX:INTRON	WDR1	ENSG00000071127.17	ENST00000499869.7:ENST00000382451.6:ENST00000382452.6:ENST00000502702.5:ENST00000508079.1:ENST00000264785.11:ENST00000505851.5:ENST00000514319.5:ENST00000515018.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	48	2	2.8863	3.0100949999999997	3.13389	0.0111679	0.00405473	0.0877435	0.0578376
chr7	36402092	36402192	3307122	0	+	0.43	(0.408,0.44]	chr7	307087	23	INTRON	INTRON	ANLN	ENSG00000011426.11	ENST00000396068.6:ENST00000265748.7:ENST00000424865.1	protein_coding	protein_coding	protein_coding	protein_coding	5	105	2	2.51198	3.010085	3.50819	0.00288187	5.7683e-5	0.0475859	0.00620725
chr11	65429163	65429263	4805834	0	+	0.37	(0.35,0.378]	chr11	446554	65	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	37	787	2	2.85402	3.01008	3.16614	7.07355e-6	7.34442e-8	0.00199339	1.17561e-4
chr12	91625814	91625914	5385475	0	-	0.5	(0.476,0.515]	chr12	513485	1186	INTRON	INTRON	ENSG00000289605	ENSG00000289605.1	ENST00000685093.1	lncRNA	lncRNA	lncRNA	lncRNA	13	252	2	2.65651	3.01006	3.36361	7.95731e-5	2.21963e-6	0.00801397	9.33996e-4
chr18	51053994	51054092	6901866	0	+	0.367347	(0.35,0.378]	chr18	683867	18	EXON_MRNA	EXON_MRNA:INTRON	SMAD4	ENSG00000141646.15	ENST00000398417.6:ENST00000342988.8:ENST00000592911.5:ENST00000611848.2:ENST00000588745.5:ENST00000592186.5:ENST00000585448.1:ENST00000591126.5:ENST00000684953.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	39	2	1.82281	3.0099549999999997	4.1971	0.0367539	0.0316938	0.144635	0.138959
chr12	71758569	71758669	5168760	0	+	0.51	(0.476,0.515]	chr12	489646	29	INTRON	INTRON	RAB21	ENSG00000080371.6	ENST00000261263.5	protein_coding	protein_coding	protein_coding	protein_coding	3	65	2	2.96824	3.00988	3.05152	0.0064848	9.98194e-4	0.0699952	0.0290732
chr10	131978691	131978790	4715865	0	-	0.474747	(0.44,0.476]	chr10	435218	44	INTRON	INTRON	BNIP3	ENSG00000176171.12	ENST00000368636.9:ENST00000540159.4:ENST00000633835.2:ENST00000631806.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	49	2	2.60774	3.0097500000000004	3.41176	0.0255874	0.00130987	0.120269	0.0333932
chr17	27101512	27101612	6579840	0	+	0.4	(0.378,0.408]	chr17	639586	47	INTRON	INTRON	ENSG00000285822	ENSG00000285822.1	ENST00000649401.1	lncRNA	lncRNA	lncRNA	lncRNA	8	165	2	2.8946	3.00971	3.12482	1.7345e-4	5.44175e-5	0.0120842	0.00603408
chr10	21695061	21695160	4406040	0	+	0.434343	(0.408,0.44]	chr10	406535	62	INTRON	INTRON	MLLT10	ENSG00000078403.17	ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000651298.1:ENST00000377059.7:ENST00000651382.1:ENST00000438473.6:ENST00000420525.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	14	257	2	2.75328	3.0096350000000003	3.26599	2.42166e-5	1.09723e-5	0.00404178	0.00244426
chr2	8857080	8857180	1062084	0	-	0.39	(0.378,0.408]	chr2	113302	45	UTR3	UTR3:EXON_MRNA	MBOAT2	ENSG00000143797.12	ENST00000305997.8	protein_coding	protein_coding	protein_coding	protein_coding	4	81	2	2.31181	3.00955	3.70729	0.00548372	5.5156e-4	0.0671431	0.0216014
chr12	46474460	46474560	5125444	0	+	0.45	(0.44,0.476]	chr12	483443	38	INTRON	INTRON	ENSG00000257261	ENSG00000257261.7	ENST00000687751.1:ENST00000667191.1:ENST00000663959.1:ENST00000666025.1:ENST00000611243.2:ENST00000657145.1	lncRNA	lncRNA	lncRNA	lncRNA	2	49	2	2.89047	3.00923	3.12799	0.00955699	0.0050635	0.0863913	0.0621733
chr7	75509447	75509545	3558954	0	-	0.459184	(0.44,0.476]	chr7	331568	12	INTRON	INTRON	PMS2P3	ENSG00000127957.19	ENST00000693762.1:ENST00000394921.8:ENST00000430602.5:ENST00000418756.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	2	49	2	2.89047	3.00923	3.12799	0.00955699	0.0050635	0.0863913	0.0621733
chr5	66028073	66028173	2371879	0	+	0.25	[0,0.28]	chr5	228555	4	SS3_PROX	SS3_PROX:INTRON	ERBIN	ENSG00000112851.15	ENST00000380943.6:ENST00000416865.6:ENST00000380935.5:ENST00000284037.10:ENST00000380938.6:ENST00000511297.5:ENST00000506030.5:ENST00000508515.1	protein_coding	protein_coding	protein_coding	protein_coding	2	69	2	2.64309	3.009195	3.3753	0.0308646	0.00242466	0.13151	0.0454587
chr10	96869210	96869310	4503335	0	+	0.55	(0.515,0.57]	chr10	414536	104	INTRON	INTRON	LCOR	ENSG00000196233.14	ENST00000676067.1:ENST00000676257.1:ENST00000676187.1:ENST00000675151.1:ENST00000675687.1:ENST00000675251.1:ENST00000676123.1:ENST00000371103.8:ENST00000675471.1:ENST00000421806.4:ENST00000675902.1:ENST00000540664.6:ENST00000676414.1:ENST00000675537.1:ENST00000675117.1:ENST00000675125.1:ENST00000356016.7:ENST00000371097.8:ENST00000676381.1:ENST00000674796.1:ENST00000674725.1:ENST00000675971.1:ENST00000676373.1:ENST00000676314.1:ENST00000675915.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	56	2	2.53845	3.00902	3.47959	0.00632226	8.38022e-4	0.0687526	0.0263691
chr19	17068730	17068830	7151008	0	-	0.42	(0.408,0.44]	chr19	722531	3	SS5_PROX	SS5_PROX:INTRON	HAUS8	ENSG00000131351.15	ENST00000253669.10:ENST00000448593.6:ENST00000593360.1:ENST00000598517.5:ENST00000601564.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	49	2	2.6542	3.00899	3.36378	0.0227514	0.0016048	0.117618	0.0367961
chr22	30016798	30016898	7498881	0	+	0.49	(0.476,0.515]	chr22	765106	1	SS5_PROX	SS5_PROX:INTRON	MTMR3	ENSG00000100330.16	ENST00000333027.7:ENST00000401950.7:ENST00000323630.9:ENST00000351488.7:ENST00000406629.1	protein_coding	protein_coding	protein_coding	protein_coding	2	48	2	2.82673	3.00896	3.19119	0.0134403	0.00325748	0.0946278	0.0524329
chr1	202947506	202947605	621332	0	-	0.222222	[0,0.28]	chr1	73801	5	INTRON	INTRON	ADIPOR1	ENSG00000159346.13	ENST00000340990.10:ENST00000367254.7:ENST00000417068.5:ENST00000426229.1	protein_coding	protein_coding	protein_coding	protein_coding	2	69	2	3.00498	3.008925	3.01287	0.0115634	0.00876063	0.0889104	0.0846118
chr7	105296420	105296520	3602977	0	-	0.26	[0,0.28]	chr7	336144	272	INTRON	INTRON	SRPK2	ENSG00000135250.17	ENST00000393651.8:ENST00000489828.5:ENST00000482897.5:ENST00000460391.5:ENST00000462282.5:ENST00000465112.5:ENST00000482862.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	69	2	3.00498	3.008925	3.01287	0.0115634	0.00876063	0.0889104	0.0846118
chr6	37285735	37285831	2855595	0	+	0.479167	(0.476,0.515]	chr6	269973	9	INTRON	INTRON	TBC1D22B	ENSG00000065491.8	ENST00000373491.3	protein_coding	protein_coding	protein_coding	protein_coding	2	48	2	2.9435	3.00886	3.07422	0.00929849	0.00506023	0.0817766	0.0646039
chr3	197123770	197123868	1901742	0	-	0.306122	(0.28,0.32]	chr3	190571	39	INTRON	INTRON	DLG1	ENSG00000075711.21	ENST00000667157.1:ENST00000346964.6:ENST00000656428.1:ENST00000663148.1:ENST00000655488.1:ENST00000357674.9:ENST00000671185.1:ENST00000658701.1:ENST00000667104.1:ENST00000661336.1:ENST00000669565.1:ENST00000670455.1:ENST00000656087.1:ENST00000670366.1:ENST00000653583.1:ENST00000653795.1:ENST00000671246.1:ENST00000661453.1:ENST00000665728.1:ENST00000664564.1:ENST00000653331.1:ENST00000660432.1:ENST00000660898.1:ENST00000657381.1:ENST00000659221.1:ENST00000654737.1:ENST00000669332.1:ENST00000659716.1:ENST00000660553.1:ENST00000664991.1:ENST00000419354.5:ENST00000661440.1:ENST00000667971.1:ENST00000670935.1:ENST00000668578.1:ENST00000666007.1:ENST00000661229.1:ENST00000660237.1:ENST00000657098.1:ENST00000661013.1:ENST00000436682.6:ENST00000452595.5:ENST00000662727.1:ENST00000422288.6:ENST00000448528.6:ENST00000443183.5:ENST00000656944.1:ENST00000392382.6:ENST00000450955.5:ENST00000658155.1:ENST00000669714.1:ENST00000654733.1:ENST00000469073.2:ENST00000419227.5:ENST00000392381.7:ENST00000471733.5:ENST00000419553.6:ENST00000447466.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	170	2	2.79257	3.00878	3.22499	6.82828e-4	1.59529e-4	0.0239239	0.0108718
chr16	75444423	75444521	6529320	0	-	0.44898	(0.44,0.476]	chr16	632364	15	UTR3	UTR3:EXON_MRNA	TMEM170A	ENSG00000166822.13	ENST00000357613.8:ENST00000561878.2:ENST00000568559.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	67	2	2.81462	3.00876	3.2029	0.00308681	0.00247064	0.0510391	0.0446195
chr2	38745643	38745687	1099813	0	-	0.340909	(0.32,0.35]	chr2	117977	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SRSF7	ENSG00000115875.19	ENST00000446327.6:ENST00000313117.11:ENST00000425778.5:ENST00000425941.6:ENST00000452806.5:ENST00000409276.5:ENST00000432873.5:ENST00000431066.5:ENST00000477635.5:ENST00000443213.5:ENST00000487773.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	354	2	2.27995	3.00874	3.73753	8.14752e-4	6.0342e-7	0.0260477	4.52668e-4
chr3	172068415	172068515	1559832	0	+	0.52	(0.515,0.57]	chr3	161527	211	INTRON	INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000421757.5:ENST00000469491.5:ENST00000336824.8:ENST00000423424.5:ENST00000416957.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	123	2	2.89064	3.008705	3.12677	1.33133e-4	7.69212e-5	0.0105133	0.00735438
chr1	173862965	173863064	587041	0	-	0.525253	(0.515,0.57]	chr1	70634	33	INTRON	INTRON	GAS5	ENSG00000234741.9	ENST00000651080.1	lncRNA	lncRNA	lncRNA	lncRNA	12	226	2	2.4739	3.008655	3.54341	2.84482e-4	2.89762e-7	0.0150568	2.89707e-4
chr7	102372042	102372141	3371155	0	+	0.363636	(0.35,0.378]	chr7	315430	56	INTRON	INTRON	PRKRIP1:ENSG00000239969	ENSG00000128563.13:ENSG00000239969.6	ENST00000477886.5:ENST00000469763.5:ENST00000482549.5:ENST00000496391.5:ENST00000484974.5:ENST00000492837.1:ENST00000482465.5	protein_coding	protein_coding	protein_coding:transcribed_unprocessed_pseudogene	protein_coding:processed_transcript	3	72	2	2.14264	3.00862	3.8746	0.0274795	1.66811e-4	0.123904	0.0111796
chr7	152795833	152795933	3450880	0	+	0.52	(0.515,0.57]	chr7	322525	122	INTRON	INTRON	ACTR3B	ENSG00000133627.18	ENST00000377776.7:ENST00000256001.13:ENST00000397282.2	protein_coding	protein_coding	protein_coding	protein_coding	3	32	2	1.60221	3.0085949999999997	4.41498	0.0581855	0.0106866	0.188704	0.0861859
chr3	150603886	150603986	1534452	0	+	0.53	(0.515,0.57]	chr3	159929	2	SS5_PROX	SS5_PROX:INTRON	SELENOT	ENSG00000198843.14	ENST00000480740.5:ENST00000477889.5:ENST00000471696.6:ENST00000492132.1:ENST00000485923.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	42	2	2.98677	3.0085699999999997	3.03037	0.00632549	0.00608732	0.0722266	0.0676501
chr3	183986031	183986127	1882301	0	-	0.364583	(0.35,0.378]	chr3	188197	7	UTR3	UTR3:EXON_MRNA:INTRON	ABCC5	ENSG00000114770.17	ENST00000334444.11:ENST00000265586.10:ENST00000437205.5:ENST00000382494.6:ENST00000392579.6:ENST00000443376.5:ENST00000427120.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	203	2	1.91432	3.00851	4.1027	0.00219692	4.69944e-6	0.0435144	0.00158989
chr1	207776544	207776644	305156	0	+	0.23	[0,0.28]	chr1	35129	4	INTRON	INTRON	CD46	ENSG00000117335.21	ENST00000695779.1:ENST00000695777.1:ENST00000695778.1:ENST00000496723.2:ENST00000695782.1:ENST00000695781.1:ENST00000695780.1:ENST00000636114.2:ENST00000367042.6:ENST00000322875.8:ENST00000322918.9:ENST00000354848.5:ENST00000357714.5:ENST00000358170.6:ENST00000367041.5:ENST00000367047.5:ENST00000695783.1:ENST00000695784.1:ENST00000469535.5:ENST00000360212.6:ENST00000480003.5:ENST00000695786.1:ENST00000490278.2:ENST00000488596.5:ENST00000471987.1:ENST00000462968.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	299	2	2.93378	3.008475	3.08317	2.69651e-4	4.70202e-5	0.0150813	0.00559481
chr2	55419260	55419351	1124395	0	-	0.604396	(0.57,1]	chr2	120590	3	UTR5	UTR5:EXON_MRNA	CCDC88A	ENSG00000115355.18	ENST00000263630.13:ENST00000436346.7:ENST00000336838.10:ENST00000642200.1:ENST00000413716.7:ENST00000647401.1:ENST00000645311.1:ENST00000646796.1:ENST00000645571.1:ENST00000645477.1:ENST00000645072.1:ENST00000644890.1:ENST00000644630.1:ENST00000647098.1:ENST00000642890.1:ENST00000647517.1:ENST00000645031.1:ENST00000645529.1:ENST00000644033.1:ENST00000644193.1:ENST00000647341.1:ENST00000644127.1:ENST00000644157.1:ENST00000471947.2:ENST00000642784.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	109	2	2.26905	3.00834	3.74763	2.05359e-4	4.74959e-7	0.0130644	3.67877e-4
chr19	52798100	52798200	7207882	0	-	0.37	(0.35,0.378]	chr19	731553	8	UTR3	UTR3:EXON_MRNA	ZNF28	ENSG00000198538.11	ENST00000457749.7:ENST00000438150.2	protein_coding	protein_coding	protein_coding	protein_coding	4	95	2	2.66568	3.00833	3.35098	0.00496487	1.59604e-4	0.0615009	0.0108718
chr11	70272436	70272536	4820427	0	+	0.28	[0,0.28]	chr11	449379	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	PPFIA1	ENSG00000131626.19	ENST00000253925.12:ENST00000389547.7:ENST00000532504.5:ENST00000530746.1:ENST00000532024.1:ENST00000648755.1:ENST00000644155.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	94	2	2.57049	3.0083	3.44611	0.00973452	0.00185186	0.0832222	0.039946
chr1	193071019	193071119	284379	0	+	0.51	(0.476,0.515]	chr1	32686	4	SS5_PROX	SS5_PROX:INTRON	RO60	ENSG00000116747.13	ENST00000432079.5:ENST00000400968.7:ENST00000415442.2:ENST00000460715.2:ENST00000367446.7:ENST00000367443.5:ENST00000367444.7:ENST00000367445.7:ENST00000367441.1:ENST00000512587.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	32	2	1.79693	3.008285	4.21964	0.0649782	0.0167715	0.179417	0.110511
chr11	77783661	77783761	4995606	0	-	0.48	(0.476,0.515]	chr11	472047	186	INTRON	INTRON	RSF1	ENSG00000048649.14	ENST00000308488.11:ENST00000528095.5:ENST00000440064.2:ENST00000467567.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	32	2	1.79693	3.008285	4.21964	0.0649782	0.0167715	0.179417	0.110511
chr2	218219339	218219439	1016910	0	+	0.48	(0.476,0.515]	chr2	108214	14	INTRON	INTRON	ARPC2	ENSG00000163466.16	ENST00000420104.5:ENST00000489598.5:ENST00000491780.5:ENST00000420201.5:ENST00000315717.10:ENST00000478612.5:ENST00000480062.5:ENST00000414983.5:ENST00000295685.14:ENST00000465395.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	32	2	1.79693	3.008285	4.21964	0.0649782	0.0167715	0.179417	0.110511
chr21	32379637	32379737	7438681	0	-	0.49	(0.476,0.515]	chr21	758931	7	INTRON	INTRON	URB1	ENSG00000142207.7	ENST00000382751.4	protein_coding	protein_coding	protein_coding	protein_coding	2	32	2	1.79693	3.008285	4.21964	0.0649782	0.0167715	0.179417	0.110511
chr9	125294060	125294160	4198579	0	+	0.49	(0.476,0.515]	chr9	383154	58	INTRON	INTRON	GAPVD1	ENSG00000165219.23	ENST00000497580.5:ENST00000461379.5:ENST00000297933.11:ENST00000394084.5:ENST00000469528.5:ENST00000470056.5:ENST00000394105.6:ENST00000394083.6:ENST00000495955.5:ENST00000467750.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	32	2	1.79693	3.008285	4.21964	0.0649782	0.0167715	0.179417	0.110511
chrX	136945421	136945521	7727824	0	+	0.5	(0.476,0.515]	chrX	790772	197	INTRON	INTRON	TM9SF5P	ENSG00000234062.9	ENST00000650669.2:ENST00000687469.1:ENST00000431464.6:ENST00000685550.1:ENST00000685929.1:ENST00000424306.5:ENST00000687978.1:ENST00000688713.1:ENST00000693626.1:ENST00000686432.1:ENST00000693698.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	2	32	2	1.79693	3.008285	4.21964	0.0649782	0.0167715	0.179417	0.110511
chr1	11988621	11988721	26514	0	+	0.47	(0.44,0.476]	chr1	3077	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MFN2	ENSG00000116688.18	ENST00000444836.5:ENST00000674817.1:ENST00000675053.1:ENST00000675298.1:ENST00000675817.1:ENST00000675194.1:ENST00000676369.1:ENST00000412236.2:ENST00000675530.1:ENST00000674548.1:ENST00000675959.1:ENST00000675872.1:ENST00000676426.1:ENST00000674706.1:ENST00000674658.1:ENST00000674910.1:ENST00000675231.1:ENST00000490079.5:ENST00000484391.5:ENST00000497302.1:ENST00000235329.10:ENST00000676293.1:ENST00000675919.1:ENST00000675987.1:ENST00000675512.1:ENST00000675113.1:ENST00000675781.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	30	2	2.00609	3.008235	4.01038	0.0433743	0.0360127	0.152355	0.148082
chr12	50439538	50439638	5136730	0	+	0.47	(0.44,0.476]	chr12	484406	13	INTRON	INTRON	LARP4	ENSG00000161813.23	ENST00000293618.12:ENST00000429001.7:ENST00000398473.7:ENST00000522085.5:ENST00000518444.5:ENST00000518561.5:ENST00000347328.9	protein_coding	protein_coding	protein_coding	protein_coding	2	30	2	2.00609	3.008235	4.01038	0.0433743	0.0360127	0.152355	0.148082
chr13	52684847	52684947	5506071	0	+	0.47	(0.44,0.476]	chr13	526943	43	INTRON	INTRON	SUGT1	ENSG00000165416.15	ENST00000310528.9:ENST00000343788.10	protein_coding	protein_coding	protein_coding	protein_coding	2	30	2	2.00609	3.008235	4.01038	0.0433743	0.0360127	0.152355	0.148082
chr19	10665594	10665693	7013325	0	+	0.444444	(0.44,0.476]	chr19	696757	97	INTRON	INTRON	ILF3	ENSG00000129351.17	ENST00000449870.5:ENST00000587928.5:ENST00000407004.7:ENST00000589998.5:ENST00000589600.5:ENST00000589283.5:ENST00000590009.5:ENST00000593199.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	30	2	2.00609	3.008235	4.01038	0.0433743	0.0360127	0.152355	0.148082
chr6	97277251	97277350	3164716	0	-	0.525253	(0.515,0.57]	chr6	295147	38	INTRON	INTRON	MMS22L	ENSG00000146263.12	ENST00000683635.1:ENST00000275053.8:ENST00000369251.6:ENST00000509383.5:ENST00000510018.5:ENST00000508976.5:ENST00000508820.1:ENST00000496119.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	122	2	2.95293	3.0080999999999998	3.06327	2.71022e-4	3.32143e-5	0.0150944	0.00461719
chr18	9110959	9111059	6868676	0	+	0.36	(0.35,0.378]	chr18	680510	56	INTRON	INTRON	NDUFV2	ENSG00000178127.13	ENST00000577703.1:ENST00000318388.11:ENST00000583375.5:ENST00000400033.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	57	2	1.53417	3.008005	4.48184	0.0271808	0.0191702	0.136494	0.108861
chr14	49823798	49823896	5886959	0	-	0.346939	(0.32,0.35]	chr14	558728	30	INTRON	INTRON	NEMF	ENSG00000165525.18	ENST00000298310.10:ENST00000556925.5:ENST00000555970.5:ENST00000555411.1:ENST00000557380.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	77	2	2.89743	3.008	3.11857	0.0127608	5.76454e-4	0.0926667	0.0218153
chr1	28009064	28009162	408201	0	-	0.336735	(0.32,0.35]	chr1	49164	43	INTRON	INTRON	EYA3	ENSG00000158161.16	ENST00000373871.8:ENST00000540618.5:ENST00000436342.6:ENST00000373864.5:ENST00000373863.3:ENST00000495923.5:ENST00000471498.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	90	2	2.40617	3.007925	3.60968	0.0040507	0.00105196	0.0578376	0.029592
chr10	11583836	11583936	4555790	0	-	0.52	(0.515,0.57]	chr10	420461	101	INTRON	INTRON	USP6NL	ENSG00000148429.15	ENST00000609104.6:ENST00000606752.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	91	2	2.3252100000000002	3.007855	3.6905	0.00525266	1.45191e-5	0.0633615	0.0028542
chr4	143354831	143354931	2054253	0	+	0.33	(0.32,0.35]	chr4	203721	109	INTRON	INTRON	GAB1	ENSG00000109458.9	ENST00000262995.8:ENST00000262994.9:ENST00000514639.5	protein_coding	protein_coding	protein_coding	protein_coding	2	33	2	1.95271	3.00785	4.06299	0.0559439	0.0431213	0.165463	0.162255
chr5	138387121	138387220	2495204	0	+	0.323232	(0.32,0.35]	chr5	238509	1	INTRON	INTRON	KDM3B	ENSG00000120733.14	ENST00000314358.10:ENST00000510866.5:ENST00000542866.2:ENST00000507996.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	33	2	1.95271	3.00785	4.06299	0.0559439	0.0431213	0.165463	0.162255
chr8	23029209	23029309	3923542	0	-	0.33	(0.32,0.35]	chr8	359086	2	SS5_PROX	SS5_PROX:INTRON	TNFRSF10B	ENSG00000120889.13	ENST00000276431.9:ENST00000347739.3:ENST00000523504.5:ENST00000518531.5:ENST00000519910.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	33	2	1.95271	3.00785	4.06299	0.0559439	0.0431213	0.165463	0.162255
chr19	55666818	55666917	7101652	0	+	0.616162	(0.57,1]	chr19	712540	27	INTRON	INTRON	U2AF2	ENSG00000063244.13	ENST00000450554.6:ENST00000308924.9:ENST00000592874.1:ENST00000590551.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	28	2	2.66801	3.00776	3.34751	0.0169968	0.00122677	0.110899	0.0320791
chr1	154172193	154172282	558370	0	-	0.382022	(0.378,0.408]	chr1	66243	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	TPM3	ENSG00000143549.21	ENST00000611659.4:ENST00000368533.8:ENST00000368545.7:ENST00000469717.5:ENST00000330188.13:ENST00000341485.10:ENST00000312970.13:ENST00000341372.8:ENST00000328159.9:ENST00000509409.5:ENST00000651873.1:ENST00000271850.11:ENST00000302206.9:ENST00000368531.6:ENST00000323144.12:ENST00000651641.1:ENST00000368530.7:ENST00000509601.1:ENST00000651644.1:ENST00000505010.5:ENST00000368527.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	50	2	2.78946	3.0077249999999998	3.22599	0.0158859	0.00288652	0.101453	0.0494641
chr7	103352532	103352631	3373681	0	+	0.474747	(0.44,0.476]	chr7	315782	2	EXON_MRNA	EXON_MRNA:INTRON	PSMC2	ENSG00000161057.13	ENST00000678493.1:ENST00000457587.5:ENST00000679205.1:ENST00000679341.1:ENST00000435765.5:ENST00000679250.1:ENST00000679046.1:ENST00000292644.5:ENST00000677281.1:ENST00000425206.6:ENST00000678488.1:ENST00000677943.1:ENST00000677769.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	83	2	2.97451	3.00762	3.04073	0.00853825	1.55969e-4	0.0780043	0.0106835
chr1	16313773	16313872	382231	0	-	0.373737	(0.35,0.378]	chr1	44880	75	INTRON	INTRON	FBXO42	ENSG00000037637.11	ENST00000375592.8:ENST00000478089.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	40	2	1.92704	3.0076	4.08816	0.046021	0.0228255	0.149888	0.125469
chr9	121184978	121185076	4336240	0	-	0.357143	(0.35,0.378]	chr9	398438	12	INTRON	INTRON	RAB14	ENSG00000119396.11	ENST00000373840.9:ENST00000451303.1	protein_coding	protein_coding	protein_coding	protein_coding	3	40	2	1.92704	3.0076	4.08816	0.046021	0.0228255	0.149888	0.125469
chr4	55425375	55425452	1960897	0	+	0.363636	(0.35,0.378]	chr4	196585	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	TMEM165	ENSG00000134851.13	ENST00000381334.10:ENST00000506198.5:ENST00000508404.5:ENST00000514904.5:ENST00000508561.5:ENST00000608091.1:ENST00000506103.2:ENST00000515591.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	223	2	2.19613	3.007395	3.81866	0.00240652	3.12198e-7	0.0441561	2.7976e-4
chr7	34937693	34937793	3516700	0	-	0.48	(0.476,0.515]	chr7	327952	50	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	DPY19L1	ENSG00000173852.16	ENST00000690503.1:ENST00000685246.1:ENST00000690666.1:ENST00000612226.2:ENST00000688296.1:ENST00000310974.8:ENST00000638088.2:ENST00000428054.1:ENST00000687726.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	86	2	2.80651	3.00736	3.20821	0.00250121	3.05489e-4	0.0446195	0.0155972
chr20	46087523	46087622	7346443	0	-	0.525253	(0.515,0.57]	chr20	749028	77	INTRON	INTRON	NCOA5	ENSG00000124160.12	ENST00000290231.11:ENST00000372291.3	protein_coding	protein_coding	protein_coding	protein_coding	2	44	2	2.65834	3.007215	3.35609	0.0187418	0.00174131	0.117523	0.0375363
chr1	65265132	65265232	135644	0	+	0.33	(0.32,0.35]	chr1	15345	2	SS5_PROX	SS5_PROX:INTRON	DNAJC6	ENSG00000116675.16	ENST00000463018.5:ENST00000494710.6:ENST00000263441.11:ENST00000395325.7:ENST00000483402.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	76	2	2.59855	3.0070449999999997	3.41554	0.00682041	0.00153152	0.0712518	0.0361484
chr7	105327065	105327165	3603287	0	-	0.36	(0.35,0.378]	chr7	336161	201	INTRON	INTRON	SRPK2	ENSG00000135250.17	ENST00000393651.8:ENST00000482897.5:ENST00000460391.5:ENST00000462282.5:ENST00000465112.5:ENST00000482862.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	169	2	2.36109	3.007035	3.65298	4.68792e-4	5.8379e-5	0.0196287	0.00668534
chr16	89381010	89381110	6542495	0	-	0.58	(0.57,1]	chr16	634240	75	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000647238.1:ENST00000644045.1:ENST00000643147.1:ENST00000644139.1:ENST00000568512.6:ENST00000566973.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	36	2	2.99729	3.007005	3.01672	0.00538023	5.94133e-4	0.0642754	0.0221865
chr5	139301063	139301162	2499454	0	+	0.414141	(0.408,0.44]	chr5	238913	12	INTRON	INTRON	MATR3	ENSG00000280987.4:ENSG00000015479.20	ENST00000509990.5:ENST00000506147.5:ENST00000512107.5:ENST00000361059.7:ENST00000394800.6:ENST00000502929.5:ENST00000504203.5:ENST00000514694.5:ENST00000509644.5:ENST00000505016.2:ENST00000502394.1:ENST00000512876.5:ENST00000513678.5:ENST00000513121.1:ENST00000504045.5:ENST00000504311.5:ENST00000502499.5:ENST00000510056.5:ENST00000511249.5:ENST00000394805.8:ENST00000507860.1:ENST00000509918.5:ENST00000503811.5:ENST00000511978.5:ENST00000618441.5:ENST00000508689.1:ENST00000514528.5:ENST00000504643.5:ENST00000514488.1:ENST00000503340.1:ENST00000504023.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	47	2	1.49789	3.006965	4.51604	0.0390091	0.0137419	0.161009	0.0949306
chr16	191395	191489	6425800	0	-	0.414894	(0.408,0.44]	chr16	617409	2	INTRON	INTRON	LUC7L	ENSG00000007392.17	ENST00000337351.8:ENST00000426094.5:ENST00000397783.5:ENST00000629543.2:ENST00000490762.5:ENST00000293872.13:ENST00000429378.5:ENST00000464711.5:ENST00000419516.5:ENST00000397780.5:ENST00000495349.5:ENST00000418978.5:ENST00000430864.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	66	2	2.21857	3.006955	3.79534	0.0209591	2.17043e-4	0.112046	0.0129235
chr7	112781321	112781420	3624313	0	-	0.373737	(0.35,0.378]	chr7	337160	28	INTRON	INTRON	TMEM168	ENSG00000146802.13	ENST00000312814.11:ENST00000454074.5:ENST00000447395.5:ENST00000418785.5:ENST00000449743.1:ENST00000441474.1	protein_coding	protein_coding	protein_coding	protein_coding	2	32	2	2.04358	3.00695	3.97032	0.0578667	0.0329533	0.167723	0.145171
chr3	33085027	33085127	1651045	0	-	0.47	(0.44,0.476]	chr3	169303	74	INTRON	INTRON	GLB1	ENSG00000170266.16	ENST00000399402.7:ENST00000307363.10:ENST00000307377.12:ENST00000482097.5:ENST00000485698.5:ENST00000498537.5:ENST00000415454.1:ENST00000438227.1:ENST00000440656.1:ENST00000464355.1:ENST00000450835.1:ENST00000436768.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	78	2	2.26452	3.006885	3.74925	0.00654074	4.08974e-4	0.0735539	0.0185763
chr17	66503175	66503275	6664304	0	+	0.41	(0.408,0.44]	chr17	650332	65	INTRON	INTRON	PRKCA	ENSG00000154229.12	ENST00000413366.8:ENST00000578063.5:ENST00000284384.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	87	2	2.88913	3.006855	3.12458	0.00185044	4.61817e-4	0.0388609	0.0194611
chr17	82835107	82835207	6695046	0	+	0.42	(0.408,0.44]	chr17	654907	40	INTRON	INTRON	TBCD	ENSG00000141556.22	ENST00000682479.1:ENST00000682722.1:ENST00000684464.1:ENST00000684544.1:ENST00000681983.1:ENST00000684361.1:ENST00000683184.1:ENST00000683282.1:ENST00000684408.1:ENST00000355528.9:ENST00000683444.1:ENST00000684776.1:ENST00000683041.1:ENST00000684760.1:ENST00000684349.1:ENST00000682213.1:ENST00000683009.1:ENST00000682921.1:ENST00000539345.6:ENST00000684000.1:ENST00000684188.1:ENST00000684429.1:ENST00000682610.1:ENST00000683821.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	87	2	2.88913	3.006855	3.12458	0.00185044	4.61817e-4	0.0388609	0.0194611
chr3	47657805	47657904	1683808	0	-	0.30303	(0.28,0.32]	chr3	171996	187	INTRON	INTRON	SMARCC1	ENSG00000173473.11	ENST00000254480.10:ENST00000425518.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	138	2	1.61606	3.00679	4.39752	0.0268974	1.48497e-5	0.123442	0.00289599
chr1	32806381	32806481	416056	0	-	0.46	(0.44,0.476]	chr1	50208	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	YARS1	ENSG00000134684.13	ENST00000373477.9:ENST00000676297.1:ENST00000674654.1:ENST00000674629.1:ENST00000675785.2:ENST00000481895.6:ENST00000616261.2:ENST00000470377.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	45	2	1.88483	3.00663	4.12843	0.0337192	0.0149825	0.134145	0.107704
chr22	19118333	19118433	7551974	0	-	0.42	(0.408,0.44]	chr22	771903	285	INTRON	INTRON	DGCR2	ENSG00000070413.20	ENST00000537045.5:ENST00000545799.5:ENST00000263196.12:ENST00000389262.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	199	2	2.51849	3.006615	3.49474	4.23399e-4	2.41246e-6	0.0189958	9.83942e-4
chr15	66658666	66658766	6051548	0	+	0.53	(0.515,0.57]	chr15	576221	761	INTRON	INTRON	LINC01169	ENSG00000259471.1	ENST00000558797.1	lncRNA	lncRNA	lncRNA	lncRNA	2	45	2	2.56306	3.0066	3.45014	0.0247751	0.00116948	0.131869	0.0312127
chr9	111902910	111903010	4184512	0	+	0.51	(0.476,0.515]	chr9	381684	52	INTRON	INTRON	UGCG	ENSG00000148154.10	ENST00000374279.4:ENST00000489355.1:ENST00000495085.1:ENST00000490110.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	103	2	2.89673	3.0065999999999997	3.11647	6.41912e-4	3.48163e-4	0.0231685	0.0166215
chr7	32874803	32874897	3515452	0	-	0.457447	(0.44,0.476]	chr7	327770	4	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	KBTBD2	ENSG00000170852.12	ENST00000304056.9:ENST00000485611.5:ENST00000477129.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	80	2	2.50734	3.00659	3.50584	0.00288299	8.66138e-4	0.0475859	0.0266729
chr1	45585295	45585394	93210	0	+	0.323232	(0.32,0.35]	chr1	12558	7	INTRON	INTRON	NASP	ENSG00000132780.17	ENST00000437901.6:ENST00000537798.5:ENST00000437362.6:ENST00000350030.8:ENST00000464190.6:ENST00000527359.5:ENST00000528084.5:ENST00000453748.5:ENST00000525515.5:ENST00000527470.5:ENST00000529333.5:ENST00000531532.5:ENST00000530840.5:ENST00000528238.5:ENST00000534101.1:ENST00000470768.5:ENST00000372052.8:ENST00000351223.7:ENST00000629893.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	54	2	2.09793	3.006395	3.91486	0.0450361	0.0156788	0.163255	0.101453
chr5	299486	299585	2312899	0	+	0.292929	(0.28,0.32]	chr5	223715	227	INTRON	INTRON	PDCD6	ENSG00000249915.9	ENST00000614778.4:ENST00000618970.4:ENST00000513582.5:ENST00000264933.9:ENST00000505221.5:ENST00000507528.5:ENST00000505526.1:ENST00000507473.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	81	2	2.77917	3.00636	3.23355	0.004869	0.00285651	0.0607461	0.0494641
chr7	23373444	23373544	3502690	0	-	0.32	(0.28,0.32]	chr7	326877	104	INTRON	INTRON	IGF2BP3	ENSG00000136231.14	ENST00000258729.8:ENST00000421467.6:ENST00000468263.5:ENST00000492771.5:ENST00000479504.5:ENST00000466809.6:ENST00000491719.5:ENST00000465058.5:ENST00000469723.5:ENST00000474105.5:ENST00000476938.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	81	2	2.74418	3.00634	3.2685	0.00432734	0.00328589	0.0579331	0.0527031
chr21	33428814	33428913	7396912	0	+	0.575758	(0.57,1]	chr21	753479	14	INTRON	INTRON	IFNGR2	ENSG00000159128.16	ENST00000290219.11:ENST00000439213.5:ENST00000381995.5:ENST00000545369.2:ENST00000405436.5:ENST00000696724.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	27	2	2.78409	3.006325	3.22856	0.0116033	0.00205928	0.0889104	0.0420839
chr9	130879067	130879167	4215521	0	+	0.58	(0.57,1]	chr9	386472	1	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000318560.6	protein_coding	protein_coding	protein_coding	protein_coding	2	27	2	2.78409	3.006325	3.22856	0.0116033	0.00205928	0.0889104	0.0420839
chr4	150993817	150993917	2271557	0	-	0.39	(0.378,0.408]	chr4	220921	644	INTRON	INTRON	LRBA	ENSG00000198589.14	ENST00000357115.9:ENST00000651943.2:ENST00000510413.5:ENST00000651035.1:ENST00000507224.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	82	2	1.94906	3.00629	4.06352	0.023282	5.51462e-5	0.118176	0.00608953
chr1	121375950	121376049	207982	0	+	0.434343	(0.408,0.44]	chr1	22802	6	INTRON	INTRON	SRGAP2C	ENSG00000171943.12	ENST00000367123.8:ENST00000304465.7	protein_coding	protein_coding	protein_coding	protein_coding	3	65	2	2.906	3.006205	3.10641	0.00555646	0.00131817	0.0648867	0.0333932
chr5	139281542	139281642	2499252	0	+	0.55	(0.515,0.57]	chr5	238886	7	INTRON	INTRON	MATR3:SNHG4	ENSG00000280987.4:ENSG00000281398.4	ENST00000509990.5:ENST00000506147.5:ENST00000512107.5:ENST00000361059.7:ENST00000506188.5:ENST00000394800.6:ENST00000502929.5:ENST00000504203.5:ENST00000514694.5:ENST00000507197.5:ENST00000509644.5:ENST00000505016.2:ENST00000505522.6:ENST00000502394.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	3	40	2	2.11384	3.0061999999999998	3.89856	0.0280943	0.0118599	0.137011	0.0899583
chr2	241680619	241680719	1349374	0	-	0.43	(0.408,0.44]	chr2	141798	3	SS3_PROX	SS3_PROX:INTRON	DTYMK	ENSG00000168393.13	ENST00000400770.6:ENST00000305784.7:ENST00000445261.5:ENST00000432348.5:ENST00000420144.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	120	2	2.47849	3.0061799999999996	3.53387	0.00155132	4.96441e-5	0.0358745	0.00577648
chr20	63886881	63886978	7300907	0	+	0.649485	(0.57,1]	chr20	743121	1	EXON_MRNA	EXON_MRNA:INTRON	TPD52L2	ENSG00000101150.18	ENST00000611972.4:ENST00000615907.4:ENST00000369927.8:ENST00000346249.9:ENST00000348257.9:ENST00000352482.8:ENST00000351424.8:ENST00000217121.9:ENST00000358548.4:ENST00000474176.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	42	2	2.58898	3.006105	3.42323	0.00134929	8.58388e-4	0.0338207	0.0267428
chr20	50951543	50951641	7356064	0	-	0.479592	(0.476,0.515]	chr20	750154	22	INTRON	INTRON	DPM1	ENSG00000000419.14	ENST00000371582.8:ENST00000466152.5:ENST00000683048.1:ENST00000371588.10:ENST00000371584.9:ENST00000683466.1:ENST00000681979.1:ENST00000684708.1:ENST00000413082.1:ENST00000682754.1:ENST00000683010.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	103	2	2.92386	3.00608	3.0883	7.31567e-4	3.01132e-4	0.0248722	0.0155054
chr1	31040541	31040640	412644	0	-	0.454545	(0.44,0.476]	chr1	49733	113	INTRON	INTRON	PUM1	ENSG00000134644.16	ENST00000426105.7:ENST00000373747.7:ENST00000257075.9:ENST00000424085.6:ENST00000525843.5:ENST00000440538.6:ENST00000373741.8:ENST00000373742.6:ENST00000526215.5:ENST00000525948.5:ENST00000480602.1:ENST00000524516.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	89	2	2.50256	3.00605	3.50954	0.00116647	0.00102082	0.0312127	0.0294041
chr8	90280587	90280687	3792899	0	+	0.45	(0.44,0.476]	chr8	351786	334	INTRON	INTRON	LINC00534	ENSG00000253394.7	ENST00000662145.1:ENST00000655523.1:ENST00000517400.6:ENST00000658299.1:ENST00000663329.1:ENST00000658342.1:ENST00000523283.6:ENST00000655219.1:ENST00000662692.1:ENST00000667296.1:ENST00000667565.1:ENST00000523406.2:ENST00000659030.1:ENST00000653734.1:ENST00000654785.1:ENST00000524361.5:ENST00000668745.1:ENST00000666641.2:ENST00000661519.1:ENST00000671657.1:ENST00000655123.1:ENST00000663098.1:ENST00000670903.1:ENST00000654946.1	lncRNA	lncRNA	lncRNA	lncRNA	10	130	2	1.73939	3.0060350000000002	4.27268	0.00580526	2.96005e-5	0.0686131	0.00451038
chr3	197952987	197953087	1598760	0	+	0.6	(0.57,1]	chr3	165713	1	SS3_PROX	SS3_PROX:SS5_PROX:INTRON	RPL35A	ENSG00000182899.17	ENST00000647248.2:ENST00000448864.6:ENST00000485439.5:ENST00000642387.1:ENST00000329092.12:ENST00000429437.5:ENST00000442341.5:ENST00000439255.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	27	2	2.91889	3.00601	3.09313	0.00719009	0.00369015	0.0756118	0.0535094
chr9	137676708	137676808	4224061	0	+	0.63	(0.57,1]	chr9	388197	2	SS5_PROX	SS5_PROX:INTRON	EHMT1	ENSG00000181090.21	ENST00000462484.5:ENST00000371394.6:ENST00000630754.2:ENST00000460843.6:ENST00000626216.2:ENST00000629335.2:ENST00000637335.1:ENST00000636376.1:ENST00000637655.1:ENST00000636027.1:ENST00000492232.5:ENST00000460486.3:ENST00000636081.1:ENST00000637161.1:ENST00000629417.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	27	2	2.91889	3.00601	3.09313	0.00719009	0.00369015	0.0756118	0.0535094
chr21	9110493	9110592	7426444	0	-	0.343434	(0.32,0.35]	chr21	757579	222	INTRON	INTRON	TEKT4P2	ENSG00000188681.12	ENST00000690061.1:ENST00000689141.1:ENST00000688310.1:ENST00000687537.1:ENST00000690096.1:ENST00000687888.1:ENST00000690389.1:ENST00000684989.1:ENST00000416067.6:ENST00000693307.1:ENST00000692383.1:ENST00000685666.1:ENST00000688451.1:ENST00000691190.1:ENST00000685532.1:ENST00000687488.1:ENST00000690713.1:ENST00000691834.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	14	236	2	1.87896	3.005925	4.13289	0.00206912	5.4241e-6	0.0422059	0.00173397
chr3	9660209	9660309	1359875	0	+	0.59	(0.57,1]	chr3	142852	4	SS5_PROX	SS5_PROX:INTRON	MTMR14	ENSG00000163719.20	ENST00000353332.9:ENST00000420925.5:ENST00000447144.5:ENST00000296003.9:ENST00000430020.5:ENST00000351233.9:ENST00000416864.5:ENST00000437997.1:ENST00000449543.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	42	2	2.32017	3.005925	3.69168	0.00488159	2.1608e-4	0.0640618	0.0134537
chr18	2717259	2717359	6865502	0	+	0.43	(0.408,0.44]	chr18	680035	90	INTRON	INTRON	SMCHD1	ENSG00000101596.17	ENST00000320876.11:ENST00000688342.1:ENST00000693213.1:ENST00000577880.5:ENST00000584897.5:ENST00000581711.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	88	2	2.94481	3.0058949999999998	3.06698	0.00110214	8.51999e-4	0.03038	0.0267428
chr12	110295594	110295693	5226243	0	+	0.333333	(0.32,0.35]	chr12	495240	31	INTRON	INTRON	ATP2A2	ENSG00000174437.18	ENST00000552636.2:ENST00000308664.10:ENST00000539276.7:ENST00000377685.9:ENST00000548169.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	110	2	2.84918	3.005775	3.16237	0.00550276	2.0298e-4	0.0648867	0.0124395
chr1	51266457	51266557	98479	0	+	0.42	(0.408,0.44]	chr1	13196	292	INTRON	INTRON	RNF11	ENSG00000123091.5	ENST00000242719.4:ENST00000494873.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	30	2	2.00768	3.0057650000000002	4.00385	0.0454568	0.035843	0.152216	0.149888
chr17	82556643	82556743	6692974	0	+	0.42	(0.408,0.44]	chr17	654627	360	INTRON	INTRON	FOXK2	ENSG00000141568.21	ENST00000473637.6:ENST00000335255.10:ENST00000527313.6:ENST00000570585.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	30	2	2.00768	3.0057650000000002	4.00385	0.0454568	0.035843	0.152216	0.149888
chr2	174381603	174381703	1271209	0	-	0.44	(0.408,0.44]	chr2	134358	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	CIR1	ENSG00000138433.16	ENST00000342016.8:ENST00000461454.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	30	2	2.00768	3.0057650000000002	4.00385	0.0454568	0.035843	0.152216	0.149888
chr1	35187472	35187565	420543	0	-	0.548387	(0.515,0.57]	chr1	50664	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SFPQ	ENSG00000116560.12	ENST00000470472.5:ENST00000460428.5:ENST00000696553.1:ENST00000357214.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	73	2	2.81972	3.00575	3.19178	0.00289534	5.44499e-4	0.0494641	0.0215237
chr4	150935160	150935260	2270970	0	-	0.3	(0.28,0.32]	chr4	220921	57	INTRON	INTRON	LRBA	ENSG00000198589.14	ENST00000357115.9:ENST00000651943.2:ENST00000510413.5:ENST00000651035.1:ENST00000507224.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	99	2	2.23223	3.00575	3.77927	0.0109124	3.56863e-4	0.0873034	0.0169148
chr19	8488422	8488511	7011222	0	+	0.516854	(0.515,0.57]	chr19	696222	5	EXON_LNCRNA	EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HNRNPM	ENSG00000099783.12	ENST00000348943.7:ENST00000325495.9:ENST00000600806.5:ENST00000620401.4:ENST00000596295.1:ENST00000602219.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	43	2	1.59629	3.005635	4.41498	0.0274344	0.0106866	0.136554	0.0861859
chr1	28265701	28265801	55577	0	+	0.5	(0.476,0.515]	chr1	7196	54	INTRON	INTRON	SESN2	ENSG00000130766.5	ENST00000253063.4	protein_coding	protein_coding	protein_coding	protein_coding	2	30	2	1.99341	3.0055899999999998	4.01777	0.0411361	0.037389	0.155878	0.1451
chr1	109333953	109334052	520365	0	-	0.50505	(0.476,0.515]	chr1	61131	60	INTRON	INTRON	SORT1	ENSG00000134243.12	ENST00000538502.5:ENST00000256637.8:ENST00000466471.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	30	2	1.99341	3.0055899999999998	4.01777	0.0411361	0.037389	0.155878	0.1451
chr17	80292247	80292327	6683381	0	+	0.4875	(0.476,0.515]	chr17	652992	4	SS5_PROX	SS5_PROX:INTRON	RNF213	ENSG00000173821.20	ENST00000582970.6:ENST00000508628.6:ENST00000319921.4:ENST00000559070.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	30	2	1.99341	3.0055899999999998	4.01777	0.0411361	0.037389	0.155878	0.1451
chr3	155835439	155835539	1844156	0	-	0.49	(0.476,0.515]	chr3	185550	10	INTRON	INTRON	SLC33A1	ENSG00000169359.16	ENST00000643144.2:ENST00000359479.7:ENST00000468581.2:ENST00000646424.1:ENST00000644094.1:ENST00000642438.1:ENST00000644855.1:ENST00000475842.5:ENST00000496772.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	30	2	1.99341	3.0055899999999998	4.01777	0.0411361	0.037389	0.155878	0.1451
chr1	45594973	45595073	93311	0	+	0.51	(0.476,0.515]	chr1	12578	2	SS5_PROX	SS5_PROX:INTRON	NASP	ENSG00000132780.17	ENST00000437901.6:ENST00000537798.5:ENST00000437362.6:ENST00000350030.8:ENST00000464190.6:ENST00000527359.5:ENST00000528084.5:ENST00000453748.5:ENST00000525515.5:ENST00000527470.5:ENST00000529333.5:ENST00000531532.5:ENST00000530840.5:ENST00000528238.5:ENST00000534101.1:ENST00000470768.5:ENST00000372052.8:ENST00000351223.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	79	2	2.11679	3.00556	3.89433	0.0115627	1.98377e-4	0.0962115	0.0129156
chr17	82562753	82562853	6693037	0	+	0.38	(0.378,0.408]	chr17	654633	29	INTRON	INTRON	FOXK2	ENSG00000141568.21	ENST00000473637.6:ENST00000335255.10:ENST00000527313.6:ENST00000570585.1:ENST00000531030.5:ENST00000526383.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	67	2	2.90835	3.0055449999999997	3.10274	0.00586642	0.00133715	0.0668095	0.0335955
chr22	40348539	40348638	7519811	0	+	0.494949	(0.476,0.515]	chr22	768243	8	INTRON	INTRON	ADSL	ENSG00000239900.14	ENST00000623632.4:ENST00000679723.1:ENST00000623063.3:ENST00000637666.2:ENST00000680978.1:ENST00000625194.4:ENST00000681159.1:ENST00000342312.9:ENST00000636714.1:ENST00000680444.1:ENST00000480775.3:ENST00000624503.1:ENST00000466863.1:ENST00000637669.1:ENST00000216194.11:ENST00000675622.1:ENST00000679656.1:ENST00000636265.1:ENST00000623978.3:ENST00000477111.2:ENST00000623287.4:ENST00000679609.1:ENST00000624474.1:ENST00000680378.1:ENST00000636124.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	86	2	2.77151	3.005485	3.23946	0.00288481	2.59571e-4	0.0475859	0.014326
chr2	25870586	25870686	1085463	0	-	0.51	(0.476,0.515]	chr2	115962	247	INTRON	INTRON	ASXL2	ENSG00000143970.18	ENST00000435504.9:ENST00000336112.9:ENST00000682588.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	48	2	2.7646	3.00545	3.2463	0.0162075	0.00262374	0.101453	0.0470772
chr12	101714089	101714163	5203176	0	+	0.418919	(0.408,0.44]	chr12	492664	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CHPT1	ENSG00000111666.11	ENST00000550385.1:ENST00000229266.8:ENST00000549872.5:ENST00000552351.5:ENST00000549128.5:ENST00000546490.1:ENST00000552215.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	166	2	2.338	3.00544	3.67288	3.23801e-4	4.02484e-5	0.0159645	0.00539487
chr8	129569422	129569522	4060981	0	-	0.3	(0.28,0.32]	chr8	369672	123	INTRON	INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1:ENST00000676273.1:ENST00000667643.1:ENST00000668791.1:ENST00000663716.1:ENST00000663572.1:ENST00000676148.1:ENST00000667962.1:ENST00000674877.1:ENST00000675316.1:ENST00000674656.1:ENST00000446592.7:ENST00000667341.1:ENST00000675186.1:ENST00000652971.1:ENST00000661447.1:ENST00000674863.1:ENST00000675498.1:ENST00000675527.1:ENST00000676108.1:ENST00000657647.1:ENST00000675589.1:ENST00000675913.1:ENST00000675109.1:ENST00000671632.1:ENST00000671311.1:ENST00000676099.1:ENST00000660652.1:ENST00000675522.1:ENST00000675044.1:ENST00000675435.1:ENST00000674639.1:ENST00000676069.1:ENST00000675532.1:ENST00000674762.1:ENST00000523151.6:ENST00000675948.1:ENST00000665364.1:ENST00000657251.1:ENST00000675166.1:ENST00000674883.1:ENST00000675867.1:ENST00000674580.1:ENST00000675393.1:ENST00000520048.1:ENST00000674906.1:ENST00000676030.1:ENST00000670588.1:ENST00000675072.1:ENST00000664936.1:ENST00000652914.1:ENST00000657069.1:ENST00000674882.1	lncRNA	lncRNA	lncRNA	lncRNA	10	241	2	2.40056	3.0054	3.61024	5.07461e-4	2.68226e-5	0.0202328	0.00430326
chr10	119579137	119579235	4705845	0	-	0.469388	(0.44,0.476]	chr10	434204	3	SS3_PROX	SS3_PROX:INTRON	TIAL1	ENSG00000151923.18	ENST00000369093.6:ENST00000436547.7:ENST00000489822.5:ENST00000497671.5:ENST00000470781.5:ENST00000369087.5:ENST00000470635.1:ENST00000412524.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	125	2	2.69735	3.00538	3.31341	0.00125459	3.0973e-5	0.0323608	0.00443703
chr7	110821705	110821805	3616694	0	-	0.42	(0.408,0.44]	chr7	337078	960	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000487733.5:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	87	2	2.92033	3.00535	3.09037	0.00162151	5.47766e-4	0.0367655	0.0212924
chr19	53084518	53084617	7210374	0	-	0.343434	(0.32,0.35]	chr19	731876	68	INTRON	INTRON	ZNF160	ENSG00000170949.18	ENST00000599056.5:ENST00000418871.5:ENST00000429604.5:ENST00000683776.1:ENST00000599247.5:ENST00000601982.5:ENST00000355147.9:ENST00000599729.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	168	2	2.49281	3.005315	3.51782	3.95548e-4	1.4271e-4	0.0178616	0.0109245
chr9	97563221	97563321	4172210	0	+	0.5	(0.476,0.515]	chr9	380099	4	SS5_PROX	SS5_PROX:INTRON	TMOD1	ENSG00000136842.14	ENST00000395211.6:ENST00000259365.9:ENST00000375175.1	protein_coding	protein_coding	protein_coding	protein_coding	3	64	2	2.81076	3.005255	3.19975	0.00383299	0.00203568	0.0542786	0.0417667
chr15	20472443	20472542	6118603	0	-	0.484848	(0.476,0.515]	chr15	582467	57	INTRON	INTRON	HERC2P3	ENSG00000180229.12	ENST00000428453.5:ENST00000437318.5:ENST00000430598.5:ENST00000429257.5:ENST00000414804.5:ENST00000412154.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	2	48	2	2.99852	3.005245	3.01197	0.0077575	0.00633162	0.0757402	0.0722266
chr6	15498158	15498256	2825474	0	+	0.479592	(0.476,0.515]	chr6	265230	6	INTRON	INTRON	JARID2	ENSG00000008083.14	ENST00000341776.7:ENST00000397311.4	protein_coding	protein_coding	protein_coding	protein_coding	2	48	2	2.99852	3.005245	3.01197	0.0077575	0.00633162	0.0757402	0.0722266
chr12	131717853	131717953	5249156	0	+	0.46	(0.44,0.476]	chr12	499145	25	INTRON	INTRON	SFSWAP	ENSG00000061936.10	ENST00000540469.5:ENST00000261674.9:ENST00000538548.5:ENST00000535236.5:ENST00000541286.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	50	2	2.74372	3.005205	3.26669	0.0153007	0.00305435	0.108569	0.0493883
chr6	39192055	39192155	3090427	0	-	0.47	(0.44,0.476]	chr6	289156	3	SS3_PROX	SS3_PROX:INTRON	KCNK5	ENSG00000164626.9	ENST00000359534.4	protein_coding	protein_coding	protein_coding	protein_coding	2	50	2	2.74372	3.005205	3.26669	0.0153007	0.00305435	0.108569	0.0493883
chr17	21038433	21038532	6743123	0	-	0.474747	(0.44,0.476]	chr17	662067	94	INTRON	INTRON	USP22	ENSG00000124422.12	ENST00000261497.9:ENST00000537526.6:ENST00000455117.6:ENST00000579645.5:ENST00000476111.5:ENST00000584538.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	78	2	2.2543	3.00519	3.75608	0.00787184	2.6487e-4	0.076155	0.0144071
chr19	55655653	55655749	7101519	0	+	0.614583	(0.57,1]	chr19	712494	1	INTRON	INTRON	U2AF2	ENSG00000063244.13	ENST00000450554.6:ENST00000308924.9:ENST00000588850.5:ENST00000587196.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	84	2	2.50856	3.0050850000000002	3.50161	9.75169e-5	3.17447e-5	0.0088963	0.00449886
chr7	6688625	6688721	3478373	0	-	0.395833	(0.378,0.408]	chr7	325481	3	UTR3	UTR3:EXON_MRNA	ZNF12	ENSG00000164631.19	ENST00000405858.6:ENST00000404360.5	protein_coding	protein_coding	protein_coding	protein_coding	5	93	2	2.57351	3.0049799999999998	3.43645	0.00171162	7.32287e-4	0.037419	0.0246502
chr22	31619143	31619237	7578478	0	-	0.553191	(0.515,0.57]	chr22	775532	8	UTR3	UTR3:EXON_MRNA	PISD	ENSG00000241878.12	ENST00000460723.5:ENST00000439502.7:ENST00000382151.6:ENST00000437808.5:ENST00000266095.9:ENST00000473770.5:ENST00000397500.5:ENST00000435900.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	202	2	2.73469	3.00497	3.27525	3.08915e-5	4.67995e-6	0.00443703	0.00158989
chr2	23856821	23856914	1080237	0	-	0.365591	(0.35,0.378]	chr2	115296	4	SS3_PROX	SS3_PROX:INTRON	ATAD2B	ENSG00000119778.15	ENST00000238789.10:ENST00000366438.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	71	2	2.49643	3.004955	3.51348	0.00752974	0.00136294	0.0773151	0.0336321
chr1	202795190	202795290	620618	0	-	0.24	[0,0.28]	chr1	73670	177	INTRON	INTRON	KDM5B	ENSG00000117139.18	ENST00000367265.9:ENST00000648338.1:ENST00000649542.1:ENST00000647757.1:ENST00000367264.7:ENST00000648473.1:ENST00000650569.1:ENST00000648056.1:ENST00000649770.1:ENST00000648469.1:ENST00000650417.1:ENST00000235790.9:ENST00000648738.1:ENST00000648958.1:ENST00000602511.1:ENST00000650368.1:ENST00000649200.1:ENST00000648354.1:ENST00000650493.1:ENST00000470573.5:ENST00000467487.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	47	2	1.71402	3.00469	4.29536	0.0590175	0.047753	0.170327	0.167915
chr3	12586344	12586439	1616622	0	-	0.305263	(0.28,0.32]	chr3	166896	1	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	RAF1	ENSG00000132155.14	ENST00000688543.1:ENST00000685348.1:ENST00000251849.9:ENST00000442415.7:ENST00000690585.1:ENST00000691888.1:ENST00000688444.1:ENST00000692093.1:ENST00000685697.1:ENST00000691643.1:ENST00000691724.1:ENST00000423275.6:ENST00000687326.1:ENST00000688803.1:ENST00000460610.2:ENST00000689876.1:ENST00000686455.1:ENST00000684903.1:ENST00000692830.1:ENST00000693312.1:ENST00000690460.1:ENST00000692773.1:ENST00000688625.1:ENST00000692069.1:ENST00000693664.1:ENST00000686762.1:ENST00000692311.1:ENST00000692558.1:ENST00000691779.1:ENST00000685738.1:ENST00000690397.1:ENST00000687923.1:ENST00000688269.1:ENST00000693705.1:ENST00000689097.1:ENST00000691899.1:ENST00000689914.1:ENST00000471449.2:ENST00000690625.1:ENST00000432427.3:ENST00000689389.1:ENST00000687257.1:ENST00000475353.2:ENST00000686409.1:ENST00000685653.1:ENST00000689540.1:ENST00000691396.1:ENST00000687505.1:ENST00000685437.1:ENST00000689418.1:ENST00000688914.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	282	2	2.87128	3.00469	3.1381	2.27059e-4	1.10154e-5	0.0138596	0.00244464
chr1	236862953	236863053	343196	0	+	0.47	(0.44,0.476]	chr1	39939	1	SS3_PROX	SS3_PROX:INTRON	MTR	ENSG00000116984.15	ENST00000680454.1:ENST00000366577.10:ENST00000674797.2:ENST00000679569.1:ENST00000650888.1:ENST00000535889.6:ENST00000651455.1:ENST00000681102.1:ENST00000679842.1:ENST00000681177.1:ENST00000681937.1:ENST00000366576.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	33	2	1.9039	3.0046500000000003	4.1054	0.0501498	0.0220205	0.156383	0.123836
chr2	173959502	173959601	1269013	0	-	0.464646	(0.44,0.476]	chr2	134219	29	INTRON	INTRON	SP3	ENSG00000172845.18	ENST00000310015.12:ENST00000416195.1:ENST00000418194.7:ENST00000652005.2:ENST00000462904.1:ENST00000483084.1:ENST00000490182.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	33	2	1.9039	3.0046500000000003	4.1054	0.0501498	0.0220205	0.156383	0.123836
chr21	44013458	44013558	7415043	0	+	0.45	(0.44,0.476]	chr21	755783	5	INTRON	INTRON	TRAPPC10	ENSG00000160218.13	ENST00000291574.9:ENST00000380221.7:ENST00000422875.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	33	2	1.9039	3.0046500000000003	4.1054	0.0501498	0.0220205	0.156383	0.123836
chr4	2406142	2406242	2099606	0	-	0.46	(0.44,0.476]	chr4	207735	2	SS5_PROX	SS5_PROX:INTRON	ZFYVE28	ENSG00000159733.14	ENST00000290974.7:ENST00000511071.5:ENST00000509171.5:ENST00000503000.1:ENST00000508184.5	protein_coding	protein_coding	protein_coding	protein_coding	2	33	2	1.9039	3.0046500000000003	4.1054	0.0501498	0.0220205	0.156383	0.123836
chr21	31687707	31687806	7437365	0	-	0.323232	(0.32,0.35]	chr21	758609	16	INTRON	INTRON	SCAF4	ENSG00000156304.15	ENST00000286835.12:ENST00000399804.5:ENST00000434667.3:ENST00000467731.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	57	2	2.51061	3.00465	3.49869	0.0364463	0.00108004	0.138959	0.0300133
chr7	32502586	32502685	3303304	0	+	0.333333	(0.32,0.35]	chr7	306758	64	INTRON	INTRON	AVL9	ENSG00000105778.20	ENST00000485228.1:ENST00000318709.9:ENST00000459629.1:ENST00000409301.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	121	2	2.91353	3.004555	3.09558	9.89544e-4	3.88987e-4	0.0287967	0.0177751
chr9	34243802	34243902	4111924	0	+	0.39	(0.378,0.408]	chr9	374742	13	INTRON	INTRON	UBAP1	ENSG00000165006.14	ENST00000625521.2:ENST00000379186.8:ENST00000297661.9:ENST00000626262.2:ENST00000359544.2	protein_coding	protein_coding	protein_coding	protein_coding	2	50	2	2.72993	3.0045	3.27907	0.0188736	0.0023379	0.108861	0.0442989
chr5	159182850	159182949	2758919	0	-	0.242424	[0,0.28]	chr5	260356	4	INTRON	INTRON	RNF145	ENSG00000145860.12	ENST00000424310.7:ENST00000519865.5:ENST00000274542.6:ENST00000611185.4:ENST00000521606.6:ENST00000518802.5:ENST00000520638.1:ENST00000520548.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	70	2	2.49527	3.0044399999999998	3.51361	0.0436497	0.00142208	0.14882	0.0346633
chr6	167012067	167012161	3033496	0	+	0.37234	(0.35,0.378]	chr6	282650	5	INTRON	INTRON	CEP43	ENSG00000213066.13	ENST00000622353.4:ENST00000366847.9:ENST00000349556.4	protein_coding	protein_coding	protein_coding	protein_coding	3	38	2	1.71046	3.0044250000000003	4.29839	0.0441269	0.0294717	0.162255	0.128055
chr15	89260020	89260116	6095893	0	+	0.385417	(0.378,0.408]	chr15	580091	8	INTRON	INTRON	FANCI	ENSG00000140525.20	ENST00000674831.1:ENST00000300027.12:ENST00000568670.5:ENST00000567891.5:ENST00000310775.12:ENST00000696717.1:ENST00000676003.1:ENST00000565255.5:ENST00000564920.5:ENST00000696718.1:ENST00000447611.6:ENST00000696719.1:ENST00000567996.5:ENST00000563250.5:ENST00000565522.5:ENST00000696720.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	50	2	2.95459	3.00426	3.05393	0.00957623	0.00551532	0.0820838	0.0672816
chrX	77773661	77773760	7847345	0	-	0.59596	(0.57,1]	chrX	800211	561	INTRON	INTRON	ATRX	ENSG00000085224.23	ENST00000373344.11:ENST00000395603.7:ENST00000480283.5:ENST00000624166.3:ENST00000624032.3:ENST00000623321.3:ENST00000624668.3:ENST00000622960.1:ENST00000624193.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	46	2	2.86892	3.004175	3.13943	0.00125753	3.01503e-4	0.0323608	0.0155054
chr2	131508236	131508336	867110	0	+	0.35	(0.32,0.35]	chr2	97372	3	SS3_PROX	SS3_PROX:INTRON	SMPD4BP	ENSG00000152117.18	ENST00000438378.2:ENST00000415574.6	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript:transcribed_processed_pseudogene	3	75	2	2.92893	3.0041399999999996	3.07935	0.00724137	0.00138	0.0729826	0.0341261
chr11	70408539	70408638	4821716	0	+	0.484848	(0.476,0.515]	chr11	449607	3	INTRON	INTRON	CTTN	ENSG00000085733.16	ENST00000346329.7:ENST00000301843.13:ENST00000527622.5:ENST00000376561.7:ENST00000415461.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	118	2	2.41425	3.00407	3.59389	0.00197914	3.55544e-5	0.0404068	0.00476902
chr3	47507548	47507648	1683002	0	-	0.45	(0.44,0.476]	chr3	171929	27	INTRON	INTRON	ELP6	ENSG00000163832.16	ENST00000296149.9:ENST00000442215.6:ENST00000446787.5:ENST00000439305.5:ENST00000412761.5:ENST00000444760.5:ENST00000445044.5:ENST00000461208.5:ENST00000425291.5:ENST00000494161.1:ENST00000449409.5:ENST00000414236.5:ENST00000485029.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	65	2	2.59632	3.00404	3.41176	0.00579248	0.00130987	0.0662959	0.0333932
chr8	99246001	99246101	3813609	0	+	0.35	(0.32,0.35]	chr8	353180	46	INTRON	INTRON	VPS13B	ENSG00000132549.20	ENST00000496144.5:ENST00000683334.1:ENST00000357162.7:ENST00000358544.7:ENST00000683619.1:ENST00000683869.1:ENST00000682153.1:ENST00000682358.1:ENST00000682145.1:ENST00000355155.6:ENST00000682234.1:ENST00000683486.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	57	2	2.84569	3.00403	3.16237	0.0121137	0.00550276	0.0962599	0.0648867
chr12	53457882	53457981	5142947	0	+	0.393939	(0.378,0.408]	chr12	485394	15	INTRON	INTRON	PCBP2	ENSG00000197111.16	ENST00000546463.6:ENST00000437231.5:ENST00000447282.5:ENST00000359282.9:ENST00000549863.5:ENST00000359462.9:ENST00000550520.6:ENST00000552296.6:ENST00000551104.5:ENST00000552819.5:ENST00000455667.7:ENST00000439930.7:ENST00000548933.5:ENST00000546652.6:ENST00000562264.5:ENST00000548190.1:ENST00000550585.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	108	2	2.78931	3.0039949999999997	3.21868	6.20851e-4	4.53506e-4	0.0223951	0.0196892
chr1	10502789	10502888	23255	0	+	0.444444	(0.44,0.476]	chr1	2503	71	INTRON	INTRON	PEX14	ENSG00000142655.13	ENST00000472851.1:ENST00000356607.9:ENST00000491661.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	48	2	2.86231	3.0039499999999997	3.14559	0.012214	0.00384923	0.0910127	0.0562562
chr12	9309547	9309647	5073273	0	+	0.46	(0.44,0.476]	chr12	479696	2	SS3_PROX	SS3_PROX:INTRON	ENSG00000111788	ENSG00000111788.10	ENST00000539757.1	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	2	48	2	2.86231	3.0039499999999997	3.14559	0.012214	0.00384923	0.0910127	0.0562562
chr17	16156374	16156473	6734638	0	-	0.444444	(0.44,0.476]	chr17	660719	26	INTRON	INTRON	NCOR1	ENSG00000141027.22	ENST00000268712.8:ENST00000395851.5:ENST00000395848.5:ENST00000411510.5:ENST00000582357.5:ENST00000436828.5:ENST00000460276.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	48	2	2.86231	3.0039499999999997	3.14559	0.012214	0.00384923	0.0910127	0.0562562
chr16	14627995	14628083	6449834	0	-	0.329545	(0.32,0.35]	chr16	621367	3	EXON_MRNA	EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PARN	ENSG00000140694.17	ENST00000651865.1:ENST00000437198.7:ENST00000651348.1:ENST00000650990.1:ENST00000652541.1:ENST00000652727.1:ENST00000651300.1:ENST00000420015.6:ENST00000652051.1:ENST00000341484.11:ENST00000539279.5:ENST00000651049.1:ENST00000650960.1:ENST00000651634.1:ENST00000564113.6:ENST00000652411.1:ENST00000652501.1:ENST00000651027.1:ENST00000651913.1:ENST00000563641.6:ENST00000651241.1:ENST00000538472.5:ENST00000566021.1:ENST00000562896.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	75	2	2.58753	3.003895	3.42026	0.00560122	0.00219805	0.0678837	0.0417893
chr1	167961539	167961638	248738	0	+	0.30303	(0.28,0.32]	chr1	29542	93	INTRON	INTRON	DCAF6	ENSG00000143164.16	ENST00000450548.5:ENST00000470919.5:ENST00000432587.6:ENST00000367843.7:ENST00000470721.5:ENST00000367840.4:ENST00000312263.10:ENST00000455334.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	81	2	2.84671	3.00386	3.16101	0.0061861	0.00216662	0.0677395	0.0434015
chrX	110027240	110027339	7700279	0	+	0.313131	(0.28,0.32]	chrX	788130	227	INTRON	INTRON	TMEM164	ENSG00000157600.12	ENST00000372072.7:ENST00000471255.5:ENST00000372073.5:ENST00000372068.7:ENST00000288381.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	81	2	2.84671	3.00386	3.16101	0.0061861	0.00216662	0.0677395	0.0434015
chr5	6620595	6620695	2566649	0	-	0.39	(0.378,0.408]	chr5	245942	4	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	NSUN2	ENSG00000037474.15	ENST00000264670.11:ENST00000504374.5:ENST00000505892.5:ENST00000506139.5:ENST00000505264.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	51	2	2.85854	3.00373	3.14892	0.0107837	0.00499984	0.0920575	0.0617433
chr5	73505011	73505101	2389618	0	+	0.355556	(0.35,0.378]	chr5	230687	1	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	BTF3	ENSG00000145741.17	ENST00000676862.1:ENST00000335895.12:ENST00000678135.1:ENST00000380591.8:ENST00000514360.5:ENST00000679077.1:ENST00000514505.7:ENST00000509708.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	70	2	2.87835	3.0037000000000003	3.12905	0.00566312	0.00160563	0.0653997	0.0367961
chr14	37078387	37078487	5877071	0	-	0.42	(0.408,0.44]	chr14	558013	2030	INTRON	INTRON	SLC25A21	ENSG00000183032.12	ENST00000331299.6:ENST00000555449.5:ENST00000557611.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	66	2	2.44674	3.003655	3.56057	0.00868283	9.67143e-4	0.0842798	0.0282401
chr16	18145354	18145454	6454087	0	-	0.36	(0.35,0.378]	chr16	621960	1416	INTRON	INTRON	ENSG00000259929:ENSG00000260242	ENSG00000259929.5:ENSG00000260242.1	ENST00000567304.1:ENST00000563866.1	lncRNA	lncRNA	lncRNA	lncRNA	3	72	2	2.39583	3.0035800000000004	3.61133	0.0107976	9.14099e-4	0.0920575	0.0278396
chr19	48858559	48858659	7199730	0	-	0.48	(0.476,0.515]	chr19	730013	3	SS5_PROX	SS5_PROX:INTRON	PLEKHA4	ENSG00000105559.12	ENST00000263265.11:ENST00000355496.9:ENST00000595867.1:ENST00000594195.1	protein_coding	protein_coding	protein_coding	protein_coding	2	49	2	2.80729	3.00352	3.19975	0.0126008	0.00383299	0.0980703	0.0542786
chr16	47582730	47582829	6344526	0	+	0.313131	(0.28,0.32]	chr16	608903	20	INTRON	INTRON	PHKB	ENSG00000102893.17	ENST00000566044.5:ENST00000299167.12:ENST00000696809.1:ENST00000323584.10:ENST00000567402.5:ENST00000570047.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	43	2	1.76378	3.0034899999999998	4.2432	0.0479043	0.0395495	0.161534	0.153019
chr2	53948120	53948220	1120346	0	-	0.29	(0.28,0.32]	chr2	120091	3	SS5_PROX	SS5_PROX:INTRON	PSME4	ENSG00000068878.15	ENST00000404125.6:ENST00000389993.7:ENST00000481518.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	43	2	1.76378	3.0034899999999998	4.2432	0.0479043	0.0395495	0.161534	0.153019
chr6	13660130	13660230	3058708	0	-	0.31	(0.28,0.32]	chr6	284542	9	INTRON	INTRON	RANBP9	ENSG00000010017.13	ENST00000011619.6	protein_coding	protein_coding	protein_coding	protein_coding	3	43	2	1.76378	3.0034899999999998	4.2432	0.0479043	0.0395495	0.161534	0.153019
chr1	155508731	155508831	562351	0	-	0.37	(0.35,0.378]	chr1	67101	259	INTRON	INTRON	ASH1L	ENSG00000116539.14	ENST00000676814.1:ENST00000392403.8:ENST00000368346.7:ENST00000677213.1:ENST00000678117.1:ENST00000679097.1:ENST00000679333.1:ENST00000677042.1:ENST00000678699.1:ENST00000677825.1:ENST00000679133.1:ENST00000548830.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	43	2	1.4414	3.00345	4.5655	0.0629423	0.0155464	0.196658	0.100909
chr9	111923151	111923251	4184719	0	+	0.3	(0.28,0.32]	chr9	381702	2	SS5_PROX	SS5_PROX:INTRON	UGCG	ENSG00000148154.10	ENST00000374279.4:ENST00000495085.1:ENST00000490110.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	82	2	3.00291	3.00343	3.00395	0.0101329	0.00110829	0.0850389	0.0305035
chr3	11317587	11317686	1364852	0	+	0.484848	(0.476,0.515]	chr3	143872	17	INTRON	INTRON	ATG7	ENSG00000197548.13	ENST00000693202.1:ENST00000435760.6:ENST00000685771.1:ENST00000354449.7:ENST00000354956.9:ENST00000446450.6:ENST00000488924.5:ENST00000424071.5:ENST00000434066.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	104	2	2.79856	3.0033849999999997	3.20821	7.60949e-4	3.05489e-4	0.0252625	0.0155972
chr3	28262492	28262591	1390754	0	+	0.454545	(0.44,0.476]	chr3	145636	84	INTRON	INTRON	CMC1	ENSG00000187118.14	ENST00000477739.1:ENST00000423894.5:ENST00000466830.6:ENST00000334841.10:ENST00000418849.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	49	2	1.66775	3.00337	4.33899	0.0219883	0.0206616	0.123836	0.110999
chr3	197952039	197952139	1598750	0	+	0.3	(0.28,0.32]	chr3	165708	1	SS3_PROX	SS3_PROX:INTRON	RPL35A	ENSG00000182899.17	ENST00000647248.2:ENST00000448864.6:ENST00000485439.5:ENST00000642387.1:ENST00000329092.12:ENST00000429437.5:ENST00000442341.5:ENST00000439255.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	139	2	3.00291	3.003125	3.00334	0.00110829	5.23416e-4	0.0305035	0.0210842
chr1	45909488	45909588	94873	0	+	0.44	(0.408,0.44]	chr1	12702	267	INTRON	INTRON	MAST2	ENSG00000086015.23	ENST00000470809.1:ENST00000361297.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	104	2	2.91156	3.0030799999999997	3.0946	7.51561e-4	3.17111e-4	0.0251179	0.0159645
chr11	2991292	2991392	4891991	0	-	0.43	(0.408,0.44]	chr11	458382	3	SS3_PROX	SS3_PROX:SS5_PROX:INTRON	NAP1L4	ENSG00000205531.13	ENST00000620138.4:ENST00000380542.9:ENST00000526115.5:ENST00000532325.6:ENST00000448187.5:ENST00000399614.6:ENST00000430811.5:ENST00000529361.5:ENST00000528968.5:ENST00000526842.5:ENST00000531291.5:ENST00000534372.1	protein_coding	protein_coding	protein_coding	protein_coding	19	371	2	2.51889	3.00304	3.48719	8.87962e-5	9.54474e-8	0.00843072	1.33534e-4
chr20	35060553	35060652	7332581	0	-	0.343434	(0.32,0.35]	chr20	746961	26	INTRON	INTRON	TRPC4AP	ENSG00000100991.12	ENST00000252015.3:ENST00000451813.6	protein_coding	protein_coding	protein_coding	protein_coding	5	123	2	2.81262	3.00304	3.19346	0.00311322	8.63465e-5	0.0498063	0.00783027
chr1	108298115	108298215	176616	0	+	0.4	(0.378,0.408]	chr1	19153	134	INTRON	INTRON	SLC25A24P1	ENSG00000241361.8	ENST00000411846.6:ENST00000434803.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	3	71	2	2.23831	3.003025	3.76774	0.0179575	4.21442e-4	0.114265	0.0189827
chr18	8914475	8914575	6868532	0	+	0.36	(0.35,0.378]	chr18	680486	1	SS5_PROX	SS5_PROX:INTRON	ENSG00000287719	ENSG00000287719.1	ENST00000667345.1	lncRNA	lncRNA	lncRNA	lncRNA	6	130	2	2.27878	3.003015	3.72725	0.0041508	1.86048e-5	0.0568675	0.00329969
chr18	9548252	9548352	6945626	0	-	0.25	[0,0.28]	chr18	686932	3	SS3_PROX	SS3_PROX:INTRON	PPP4R1	ENSG00000154845.16	ENST00000400555.7:ENST00000400556.8:ENST00000582594.5:ENST00000285124.12:ENST00000579609.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	69	2	2.95729	3.00298	3.04867	0.0104221	0.0101824	0.089002	0.085482
chr9	137626942	137627041	4223551	0	+	0.454545	(0.44,0.476]	chr9	388152	65	INTRON	INTRON	EHMT1	ENSG00000181090.21	ENST00000462484.5:ENST00000371394.6:ENST00000630754.2:ENST00000460843.6:ENST00000626216.2:ENST00000637593.1:ENST00000629335.2:ENST00000637335.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	142	2	2.8917	3.002905	3.11411	1.6068e-4	1.22121e-4	0.0116076	0.00944529
chr4	78852843	78852942	1982158	0	+	0.414141	(0.408,0.44]	chr4	198504	14	INTRON	INTRON	BMP2K	ENSG00000138756.19	ENST00000389010.7:ENST00000502613.3:ENST00000502871.5:ENST00000505725.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	144	2	2.8411	3.0028699999999997	3.16464	6.58235e-4	2.26292e-5	0.0234118	0.00371897
chr17	81564457	81564553	6848851	0	-	0.416667	(0.408,0.44]	chr17	678121	6	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	NPLOC4	ENSG00000182446.14	ENST00000331134.11:ENST00000572760.5:ENST00000572346.5:ENST00000573519.5:ENST00000573876.1:ENST00000571714.5:ENST00000572824.1:ENST00000573212.5:ENST00000576713.6:ENST00000374747.9:ENST00000576940.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	187	2	2.72006	3.00286	3.28566	6.60258e-5	4.60038e-5	0.0071649	0.00552588
chr1	153991698	153991776	227512	0	+	0.358974	(0.35,0.378]	chr1	26215	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPS27	ENSG00000177954.14	ENST00000651669.1:ENST00000643794.1:ENST00000493224.5:ENST00000477151.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	44	2	1.70607	3.00284	4.29961	0.0482819	0.0158483	0.153283	0.109464
chr15	83494499	83494599	6082455	0	+	0.38	(0.378,0.408]	chr15	579050	32	INTRON	INTRON	SH3GL3	ENSG00000140600.17	ENST00000492099.1:ENST00000427482.7:ENST00000563901.5:ENST00000324537.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	70	2	2.00398	3.00284	4.0017	0.0393906	7.73853e-5	0.143072	0.00735438
chr8	105477237	105477337	3838834	0	+	0.42	(0.408,0.44]	chr8	354063	256	INTRON	INTRON	ZFPM2	ENSG00000169946.14	ENST00000407775.7:ENST00000520492.5:ENST00000520027.5:ENST00000524235.5:ENST00000511341.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	104	2	2.93869	3.002835	3.06698	8.51999e-4	2.73901e-4	0.0267428	0.0147448
chr10	48328162	48328262	4431204	0	+	0.45	(0.44,0.476]	chr10	408569	18	INTRON	INTRON	MAPK8	ENSG00000107643.17	ENST00000395611.7:ENST00000432379.5:ENST00000374189.6:ENST00000429041.6:ENST00000374179.8:ENST00000426557.5:ENST00000476134.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	48	2	2.80275	3.002825	3.2029	0.0146513	0.00308681	0.0982604	0.0510391
chr5	145808716	145808815	2746374	0	-	0.444444	(0.44,0.476]	chr5	258695	118	INTRON	INTRON	PRELID2	ENSG00000186314.12	ENST00000683046.1:ENST00000334744.8:ENST00000394450.6:ENST00000505416.5:ENST00000511435.1	protein_coding	protein_coding	protein_coding	protein_coding	2	48	2	2.80275	3.002825	3.2029	0.0146513	0.00308681	0.0982604	0.0510391
chr8	66923890	66923985	3961447	0	-	0.473684	(0.44,0.476]	chr8	363415	8	INTRON	INTRON	SNHG6	ENSG00000245910.9	ENST00000686474.1:ENST00000520944.6:ENST00000521399.6:ENST00000693345.1:ENST00000520348.6:ENST00000689720.1:ENST00000520619.1:ENST00000521127.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	13	214	2	2.35119	3.00271	3.65423	2.25478e-4	2.41976e-5	0.0137972	0.00385018
chr12	50156702	50156801	5323069	0	-	0.454545	(0.44,0.476]	chr12	507529	20	INTRON	INTRON	CERS5	ENSG00000139624.14	ENST00000317551.12:ENST00000422340.6:ENST00000551697.5:ENST00000380189.8:ENST00000547787.5:ENST00000438450.6:ENST00000542320.5:ENST00000547800.2:ENST00000549389.5:ENST00000550258.5:ENST00000547455.5:ENST00000546514.1:ENST00000549942.1:ENST00000550899.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	48	2	2.9195	3.002705	3.08591	0.0102021	0.00481262	0.0850389	0.0638089
chr17	81402382	81402481	6690210	0	+	0.323232	(0.32,0.35]	chr17	653831	14	EXON_MRNA	EXON_MRNA:INTRON	BAHCC1	ENSG00000266074.10	ENST00000675386.2:ENST00000584436.7:ENST00000307745.8:ENST00000625166.1	protein_coding	protein_coding	protein_coding	protein_coding:TEC	1	27	2	2.23182	3.00263	3.77344	0.068598	0.0596635	0.189982	0.184298
chr21	37959597	37959697	7462475	0	-	0.35	(0.32,0.35]	chr21	760269	62	INTRON	INTRON	DSCR4	ENSG00000184029.9	ENST00000398948.5	lncRNA	lncRNA	lncRNA	lncRNA	1	27	2	2.23182	3.00263	3.77344	0.068598	0.0596635	0.189982	0.184298
chr5	90711913	90712004	2421976	0	+	0.340659	(0.32,0.35]	chr5	233004	2	SS3_PROX	SS3_PROX:INTRON	ADGRV1	ENSG00000164199.18	ENST00000405460.9:ENST00000639473.1:ENST00000639431.1:ENST00000640779.1:ENST00000640012.1:ENST00000640374.1:ENST00000509621.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	27	2	2.23182	3.00263	3.77344	0.068598	0.0596635	0.189982	0.184298
chr6	145880623	145880723	3244247	0	-	0.33	(0.32,0.35]	chr6	301290	158	INTRON	INTRON	SHPRH	ENSG00000146414.17	ENST00000417762.5	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	2.23182	3.00263	3.77344	0.068598	0.0596635	0.189982	0.184298
chr9	92393758	92393858	4155124	0	+	0.34	(0.32,0.35]	chr9	379002	135	INTRON	INTRON	CENPP	ENSG00000188312.14	ENST00000375587.8	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	2.23182	3.00263	3.77344	0.068598	0.0596635	0.189982	0.184298
chr1	112661078	112661178	186750	0	+	0.38	(0.378,0.408]	chr1	20673	9	INTRON	INTRON	CAPZA1	ENSG00000116489.13	ENST00000476936.5:ENST00000263168.4:ENST00000498626.1:ENST00000466066.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	36	2	1.59317	3.00243	4.41169	0.0603812	0.0199606	0.19151	0.109608
chrX	24754672	24754771	7632323	0	+	0.393939	(0.378,0.408]	chrX	781725	53	INTRON	INTRON	POLA1	ENSG00000101868.13	ENST00000672178.1:ENST00000379068.8:ENST00000379059.7:ENST00000611764.2:ENST00000480125.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	70	2	2.83344	3.0021649999999998	3.17089	0.00357279	0.00244811	0.0548435	0.0445777
chr17	49047862	49047960	6625132	0	+	0.438776	(0.408,0.44]	chr17	646677	11	INTRON	INTRON	IGF2BP1	ENSG00000159217.10	ENST00000290341.8:ENST00000431824.2	protein_coding	protein_coding	protein_coding	protein_coding	5	104	2	2.85572	3.002015	3.14831	5.86664e-4	4.26582e-4	0.022457	0.0184578
chr22	16797774	16797873	7546377	0	-	0.30303	(0.28,0.32]	chr22	771315	130	INTRON	INTRON	XKR3	ENSG00000172967.8	ENST00000331428.5:ENST00000684488.1	protein_coding	protein_coding	protein_coding	protein_coding	2	61	2	2.57195	3.001905	3.43186	0.0331711	0.00160646	0.133994	0.0367961
chr7	105301263	105301363	3603028	0	-	0.57	(0.515,0.57]	chr7	336154	26	INTRON	INTRON	SRPK2	ENSG00000135250.17	ENST00000393651.8:ENST00000482897.5:ENST00000460391.5:ENST00000462282.5:ENST00000465112.5:ENST00000482862.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	56	2	2.6325	3.001875	3.37125	0.00439001	0.00136343	0.0585064	0.0339121
chr6	44248347	44248431	2872842	0	+	0.392857	(0.378,0.408]	chr6	272580	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HSP90AB1	ENSG00000096384.20	ENST00000620073.4:ENST00000353801.7:ENST00000371646.10:ENST00000371554.2	protein_coding	protein_coding	protein_coding	protein_coding	11	219	2	2.64559	3.0017300000000002	3.35787	1.0762e-4	2.48842e-5	0.00930134	0.00391907
chr2	96617499	96617596	1180979	0	-	0.340206	(0.32,0.35]	chr2	126484	16	INTRON	INTRON	KANSL3	ENSG00000114982.19	ENST00000354204.10:ENST00000431828.6:ENST00000487070.5:ENST00000447759.5:ENST00000420155.5:ENST00000670907.1:ENST00000666923.1:ENST00000597150.5:ENST00000444759.5:ENST00000452268.5:ENST00000425656.5:ENST00000448075.1:ENST00000451819.5:ENST00000416138.1:ENST00000418735.1:ENST00000464738.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	56	2	2.96746	3.001715	3.03597	0.00832487	0.00815799	0.0810802	0.0774402
chr20	32391025	32391125	7256153	0	+	0.46	(0.44,0.476]	chr20	737076	186	INTRON	INTRON	ASXL1	ENSG00000171456.21	ENST00000651418.1:ENST00000375687.10:ENST00000613218.4:ENST00000644587.1:ENST00000620121.4:ENST00000646985.1:ENST00000643168.1:ENST00000306058.9:ENST00000645688.1:ENST00000470145.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	64	2	2.78129	3.0016049999999996	3.22192	0.00360821	0.00229634	0.0533855	0.0439319
chr5	139591071	139591171	2500801	0	+	0.46	(0.44,0.476]	chr5	239026	283	INTRON	INTRON	UBE2D2	ENSG00000131508.16	ENST00000511725.5:ENST00000505007.5:ENST00000398733.8:ENST00000510470.1:ENST00000398734.8:ENST00000505548.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	64	2	2.69297	3.00154	3.31011	0.00333494	0.00259023	0.0528877	0.0452934
chr2	131684989	131685083	867845	0	+	0.319149	(0.28,0.32]	chr2	97485	2	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	C2orf27A	ENSG00000287151.1	ENST00000652878.1:ENST00000657415.1:ENST00000666411.1:ENST00000653458.1:ENST00000655714.1	lncRNA	lncRNA	lncRNA	lncRNA	2	61	2	2.91832	3.0014700000000003	3.08462	0.0102484	0.0078976	0.089002	0.076155
chr7	119662566	119662666	3627962	0	-	0.28	[0,0.28]	chr7	337315	1621	INTRON	INTRON	LINC02476	ENSG00000225546.6	ENST00000660268.1	lncRNA	lncRNA	lncRNA	lncRNA	7	193	2	2.72588	3.001465	3.27705	7.64243e-4	3.17347e-4	0.0253443	0.0159645
chr1	108296320	108296420	176598	0	+	0.38	(0.378,0.408]	chr1	19153	116	INTRON	INTRON	SLC25A24P1	ENSG00000241361.8	ENST00000411846.6:ENST00000434803.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	2	30	2	1.89621	3.00141	4.10661	0.0488044	0.0399023	0.173377	0.143072
chr10	48413463	48413563	4432064	0	+	0.39	(0.378,0.408]	chr10	408600	29	INTRON	INTRON	MAPK8	ENSG00000107643.17	ENST00000395611.7:ENST00000374189.6:ENST00000429041.6:ENST00000374179.8:ENST00000360332.7:ENST00000374182.7:ENST00000374176.8:ENST00000374174.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	30	2	1.89621	3.00141	4.10661	0.0488044	0.0399023	0.173377	0.143072
chr11	68479492	68479592	4817520	0	+	0.39	(0.378,0.408]	chr11	448907	183	INTRON	INTRON	PPP6R3	ENSG00000110075.15	ENST00000530427.5:ENST00000528635.5:ENST00000529907.5:ENST00000533127.5:ENST00000534534.5:ENST00000529344.5:ENST00000524845.5:ENST00000393800.7:ENST00000265637.8:ENST00000524904.5:ENST00000393801.7:ENST00000265636.9:ENST00000529710.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	30	2	1.89621	3.00141	4.10661	0.0488044	0.0399023	0.173377	0.143072
chr14	26962537	26962637	5663982	0	+	0.39	(0.378,0.408]	chr14	540202	277	INTRON	INTRON	ENSG00000258081	ENSG00000258081.4	ENST00000656336.1:ENST00000552303.1	lncRNA	lncRNA	lncRNA	lncRNA	2	30	2	1.89621	3.00141	4.10661	0.0488044	0.0399023	0.173377	0.143072
chr3	57578182	57578280	1706093	0	-	0.397959	(0.378,0.408]	chr3	175938	4	INTRON	INTRON	ARF4	ENSG00000168374.11	ENST00000303436.11:ENST00000496292.5:ENST00000489843.1:ENST00000486310.5:ENST00000483848.5:ENST00000463880.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	30	2	1.89621	3.00141	4.10661	0.0488044	0.0399023	0.173377	0.143072
chr4	925047	925147	2094226	0	-	0.38	(0.378,0.408]	chr4	206992	94	INTRON	INTRON	GAK	ENSG00000178950.18	ENST00000314167.9:ENST00000511163.5:ENST00000505819.5:ENST00000507580.5:ENST00000502656.5:ENST00000512325.3:ENST00000628912.1:ENST00000513935.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	30	2	1.89621	3.00141	4.10661	0.0488044	0.0399023	0.173377	0.143072
chr4	26331345	26331445	1936776	0	+	0.38	(0.378,0.408]	chr4	194354	80	INTRON	INTRON	RBPJ	ENSG00000168214.22	ENST00000512351.5:ENST00000681799.1:ENST00000681403.1:ENST00000342295.6:ENST00000512671.6:ENST00000506956.5:ENST00000345843.8:ENST00000361572.10:ENST00000514380.5:ENST00000514807.5:ENST00000348160.9:ENST00000681506.1:ENST00000509158.6:ENST00000691085.1:ENST00000692303.1:ENST00000681856.1:ENST00000513182.5:ENST00000681025.1:ENST00000681679.1:ENST00000680210.1:ENST00000355476.8:ENST00000680140.1:ENST00000511401.5:ENST00000680511.1:ENST00000510778.7:ENST00000679698.1:ENST00000679469.1:ENST00000681484.1:ENST00000505958.6:ENST00000507561.5:ENST00000514730.5:ENST00000507574.5:ENST00000514675.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	30	2	1.89621	3.00141	4.10661	0.0488044	0.0399023	0.173377	0.143072
chr1	162595347	162595447	238667	0	+	0.45	(0.44,0.476]	chr1	28751	17	INTRON	INTRON	UAP1	ENSG00000117143.14	ENST00000367925.6:ENST00000367926.9	protein_coding	protein_coding	protein_coding	protein_coding	12	235	2	2.9774	3.00135	3.0253	4.19711e-5	8.08338e-6	0.00550232	0.00204092
chrX	13334947	13335046	7622299	0	+	0.535354	(0.515,0.57]	chrX	780326	11	EXON_LNCRNA	EXON_LNCRNA	LINC01203	ENSG00000226985.7	ENST00000669963.1:ENST00000661545.1:ENST00000659526.1:ENST00000656410.1:ENST00000661104.1:ENST00000456091.2:ENST00000655502.1:ENST00000671651.1:ENST00000656979.1:ENST00000656271.1:ENST00000661629.1	lncRNA	lncRNA	lncRNA	lncRNA	13	216	2	2.58256	3.001285	3.42001	5.39663e-5	1.68594e-6	0.00601743	8.71081e-4
chr2	26056176	26056276	713320	0	+	0.5	(0.476,0.515]	chr2	82440	135	INTRON	INTRON	RAB10	ENSG00000084733.11	ENST00000264710.5:ENST00000495146.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	77	2	2.29359	3.0012049999999997	3.70882	0.00584957	4.74495e-4	0.0689807	0.0201638
chr16	53131897	53131997	6351491	0	+	0.69	(0.57,1]	chr16	609680	2	INTRON	INTRON	CHD9	ENSG00000177200.18	ENST00000447540.6:ENST00000566029.5:ENST00000615216.4:ENST00000565832.5:ENST00000564845.5:ENST00000563410.1	protein_coding	protein_coding	protein_coding	protein_coding	3	35	2	2.6547	3.001105	3.34751	0.00346848	0.00122677	0.0539802	0.0320791
chr1	77955909	77955990	494279	0	-	0.395062	(0.378,0.408]	chr1	58493	2	INTRON	INTRON	FUBP1	ENSG00000162613.17	ENST00000370768.7:ENST00000294623.8:ENST00000370767.5:ENST00000470287.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	108	2	2.66588	3.0009	3.33592	0.00156732	1.591e-4	0.0360728	0.0108481
chr17	62482205	62482305	6652912	0	+	0.46	(0.44,0.476]	chr17	649301	6	INTRON	INTRON	TLK2	ENSG00000146872.19	ENST00000582809.5:ENST00000684213.1:ENST00000583843.5:ENST00000579450.5:ENST00000577616.1:ENST00000582195.6:ENST00000682085.1:ENST00000580705.5:ENST00000346027.10:ENST00000326270.13:ENST00000682203.1:ENST00000343388.11:ENST00000683536.1:ENST00000684440.1:ENST00000684772.1:ENST00000682274.1:ENST00000682827.1:ENST00000583690.6:ENST00000682075.1:ENST00000683104.1:ENST00000684012.1:ENST00000581041.5:ENST00000684553.1:ENST00000683737.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	37	2	1.87325	3.00084	4.12843	0.0337192	0.0265709	0.134145	0.134088
chr17	37317053	37317153	6762146	0	-	0.34	(0.32,0.35]	chr17	664944	174	INTRON	INTRON	ACACA	ENSG00000278540.5	ENST00000616317.5:ENST00000614428.4:ENST00000613146.4:ENST00000615229.4:ENST00000621960.1:ENST00000617548.1:ENST00000616352.4:ENST00000614789.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	167	2	2.86811	3.0008150000000002	3.13352	2.25801e-4	1.82911e-4	0.0138078	0.01176
chr16	88729142	88729241	6539629	0	-	0.545455	(0.515,0.57]	chr16	633912	11	INTRON	INTRON	PIEZO1	ENSG00000103335.22	ENST00000301015.14	protein_coding	protein_coding	protein_coding	protein_coding	5	91	2	2.28534	3.00077	3.7162	0.0061678	1.22791e-5	0.067653	0.0026103
chr1	180708896	180708996	270365	0	+	0.61	(0.57,1]	chr1	31620	261	INTRON	INTRON	XPR1	ENSG00000143324.14	ENST00000367590.9:ENST00000367589.3	protein_coding	protein_coding	protein_coding	protein_coding	3	36	2	2.86892	3.00073	3.13254	0.00310655	0.00125753	0.0512344	0.0323608
chr7	131423461	131423561	3417406	0	+	0.51	(0.476,0.515]	chr7	319231	84	INTRON	INTRON	MKLN1	ENSG00000128585.18	ENST00000421797.6:ENST00000352689.11:ENST00000494785.5:ENST00000458153.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	15	279	2	2.80495	3.000675	3.1964	1.38837e-5	7.86592e-6	0.00295979	0.00201389
chr1	236796137	236796237	342502	0	+	0.41	(0.408,0.44]	chr1	39809	4	SS5_PROX	SS5_PROX:INTRON	MTR	ENSG00000116984.15	ENST00000680454.1:ENST00000366577.10:ENST00000674797.2:ENST00000652435.1:ENST00000679569.1:ENST00000650888.1:ENST00000463959.1:ENST00000535889.6:ENST00000651455.1:ENST00000681102.1:ENST00000679842.1:ENST00000681177.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	90	2	2.09818	3.000645	3.90311	0.00772939	1.24325e-4	0.0757122	0.00952291
chr12	54276829	54276929	5330866	0	-	0.39	(0.378,0.408]	chr12	508637	21	INTRON	INTRON	CBX5	ENSG00000094916.16	ENST00000209875.9:ENST00000618078.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	67	2	2.94613	3.000575	3.05502	0.00689519	0.00112461	0.0717484	0.0308177
chr9	109115346	109115446	4312560	0	-	0.3	(0.28,0.32]	chr9	396393	64	INTRON	INTRON	TMEM245	ENSG00000106771.13	ENST00000374586.8	protein_coding	protein_coding	protein_coding	protein_coding	3	42	2	1.6633	3.000475	4.33765	0.0522231	0.039714	0.177274	0.143072
chr11	591667	591767	4719727	0	+	0.56	(0.515,0.57]	chr11	436181	2	SS5_PROX	SS5_PROX:INTRON	PHRF1	ENSG00000070047.13	ENST00000264555.10:ENST00000416188.3:ENST00000534320.5:ENST00000413872.6:ENST00000533464.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	84	2	2.12085	3.00044	3.88003	0.00319489	1.52864e-4	0.0520636	0.0112857
chr2	171135753	171135853	1263848	0	-	0.35	(0.32,0.35]	chr2	133921	175	INTRON	INTRON	TLK1	ENSG00000198586.14	ENST00000431350.7:ENST00000360843.7:ENST00000359766.7:ENST00000521943.5:ENST00000409443.6:ENST00000413010.5:ENST00000470340.1:ENST00000466220.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	75	2	2.42352	3.0004150000000003	3.57731	0.0122807	7.67492e-4	0.091087	0.0254532
chr4	87338155	87338252	2198741	0	-	0.597938	(0.57,1]	chr4	215740	4	INTRON	INTRON	HSD17B11	ENSG00000198189.11	ENST00000358290.9:ENST00000507518.5:ENST00000512344.5:ENST00000502576.5:ENST00000507286.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	39	2	1.20064	3.000375	4.80011	0.0490781	6.07135e-4	0.174117	0.0226059
chr22	35402706	35402806	7508922	0	+	0.49	(0.476,0.515]	chr22	766453	1	SS3_PROX	SS3_PROX:INTRON	MCM5	ENSG00000100297.16	ENST00000451351.5:ENST00000382011.9:ENST00000216122.9:ENST00000417343.1:ENST00000416905.1:ENST00000444778.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	93	2	2.46178	3.000365	3.53895	0.00159317	0.00075485700000000005	0.0364566	0.0251966
chr1	32032787	32032887	62835	0	+	0.52	(0.515,0.57]	chr1	7952	2	SS3_PROX	SS3_PROX:INTRON	KHDRBS1	ENSG00000121774.18	ENST00000327300.12:ENST00000307714.12:ENST00000492989.1:ENST00000484270.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	92	2	2.7208	3.00026	3.27972	0.00306828	2.94964e-5	0.0494933	0.00431591
chr2	9510631	9510730	1064018	0	-	0.50505	(0.476,0.515]	chr2	113488	1	INTRON	INTRON	ADAM17	ENSG00000151694.14	ENST00000310823.8:ENST00000648548.1:ENST00000649227.1:ENST00000648857.1:ENST00000647979.1:ENST00000647610.1:ENST00000650116.1:ENST00000649686.1:ENST00000647622.1:ENST00000649972.1:ENST00000650241.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	137	2	2.99991	3.00013	3.00035	0.00109036	2.6806e-5	0.0303873	0.00408175
chr6	38683973	38684073	3090085	0	-	0.52	(0.515,0.57]	chr6	289116	2	SS5_PROX	SS5_PROX:INTRON	GLO1	ENSG00000124767.7	ENST00000373365.5	protein_coding	protein_coding	protein_coding	protein_coding	4	74	2	2.99316	3.000045	3.00693	9.21623e-4	7.26845e-4	0.0278396	0.0245647
chr19	48480568	48480665	7087710	0	+	0.536082	(0.515,0.57]	chr19	709311	15	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CYTH2	ENSG00000105443.16	ENST00000427476.4:ENST00000452733.7:ENST00000641098.1:ENST00000600597.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	84	2	2.08662	3.000025	3.91343	0.00375149	1.28574e-4	0.0562562	0.0103138
chr3	197123179	197123278	1901736	0	-	0.343434	(0.32,0.35]	chr3	190571	33	INTRON	INTRON	DLG1	ENSG00000075711.21	ENST00000667157.1:ENST00000346964.6:ENST00000656428.1:ENST00000663148.1:ENST00000655488.1:ENST00000357674.9:ENST00000671185.1:ENST00000658701.1:ENST00000667104.1:ENST00000661336.1:ENST00000669565.1:ENST00000670455.1:ENST00000656087.1:ENST00000670366.1:ENST00000653583.1:ENST00000653795.1:ENST00000671246.1:ENST00000661453.1:ENST00000665728.1:ENST00000664564.1:ENST00000653331.1:ENST00000660432.1:ENST00000660898.1:ENST00000657381.1:ENST00000659221.1:ENST00000654737.1:ENST00000669332.1:ENST00000659716.1:ENST00000660553.1:ENST00000664991.1:ENST00000419354.5:ENST00000661440.1:ENST00000667971.1:ENST00000670935.1:ENST00000668578.1:ENST00000666007.1:ENST00000661229.1:ENST00000660237.1:ENST00000657098.1:ENST00000661013.1:ENST00000436682.6:ENST00000452595.5:ENST00000662727.1:ENST00000422288.6:ENST00000448528.6:ENST00000443183.5:ENST00000656944.1:ENST00000392382.6:ENST00000450955.5:ENST00000658155.1:ENST00000669714.1:ENST00000654733.1:ENST00000469073.2:ENST00000419227.5:ENST00000392381.7:ENST00000471733.5:ENST00000419553.6:ENST00000447466.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	103	2	2.12121	3.000005	3.8788	0.00650424	3.3703e-4	0.0735144	0.0170609
chr16	67895364	67895463	6368859	0	+	0.414141	(0.408,0.44]	chr16	612023	16	INTRON	INTRON	PSKH1	ENSG00000159792.10	ENST00000291041.6:ENST00000570631.5:ENST00000575198.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	65	2	2.49218	2.999745	3.50731	0.00855168	8.5918e-4	0.0780217	0.0265787
chr6	152978991	152979090	3249635	0	-	0.222222	[0,0.28]	chr6	301947	30	INTRON	INTRON	FBXO5	ENSG00000112029.10	ENST00000367241.3:ENST00000229758.8	protein_coding	protein_coding	protein_coding	protein_coding	5	138	2	2.45328	2.999745	3.54621	0.00336656	0.00124865	0.0516405	0.0328543
chr11	120436107	120436207	4877210	0	+	0.37	(0.35,0.378]	chr11	455856	38	INTRON	INTRON	ARHGEF12	ENSG00000196914.9	ENST00000397843.7:ENST00000356641.7:ENST00000532993.5:ENST00000529970.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	70	2	2.91516	2.9997350000000003	3.08431	0.0065853	0.0013628	0.0701901	0.0339121
chr17	28081846	28081946	6582913	0	+	0.43	(0.408,0.44]	chr17	639837	199	INTRON	INTRON	NLK	ENSG00000087095.13	ENST00000407008.8:ENST00000496808.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	49	2	2.58624	2.9997350000000003	3.41323	0.0273686	0.00129989	0.123904	0.0333764
chr6	116645513	116645613	3197718	0	-	0.41	(0.408,0.44]	chr6	297835	4	SS5_PROX	SS5_PROX:INTRON	ZUP1	ENSG00000153975.10	ENST00000368576.8:ENST00000485498.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	49	2	2.58624	2.9997350000000003	3.41323	0.0273686	0.00129989	0.123904	0.0333764
chr20	50594252	50594352	7354447	0	-	0.47	(0.44,0.476]	chr20	749981	3	SS5_PROX	SS5_PROX:INTRON	RIPOR3	ENSG00000042062.13	ENST00000327979.8:ENST00000045083.6:ENST00000488529.5:ENST00000482129.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	78	2	2.32184	2.999615	3.67739	0.00609071	3.8961e-4	0.0676501	0.0177751
chr11	63846595	63846694	4800945	0	+	0.444444	(0.44,0.476]	chr11	445032	67	INTRON	INTRON	MARK2	ENSG00000072518.22	ENST00000377810.8:ENST00000361128.9:ENST00000508192.5:ENST00000350490.11:ENST00000402010.8:ENST00000502399.7:ENST00000425897.3:ENST00000679216.1:ENST00000513765.7	protein_coding	protein_coding	protein_coding	protein_coding	5	103	2	2.85407	2.9995950000000002	3.14512	5.78837e-4	4.30929e-4	0.0223209	0.018618
chr2	175135911	175136011	1272016	0	-	0.38	(0.378,0.408]	chr2	134464	1	SS5_PROX	SS5_PROX:INTRON	ATF2	ENSG00000115966.18	ENST00000345739.9:ENST00000426833.7:ENST00000264110.7:ENST00000409437.5:ENST00000409635.5:ENST00000428760.5:ENST00000392544.5:ENST00000417080.5:ENST00000456655.5:ENST00000421438.5:ENST00000429579.5:ENST00000415955.5:ENST00000409499.5:ENST00000435231.6:ENST00000437522.5:ENST00000409833.5:ENST00000413123.5:ENST00000445349.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	38	2	1.89251	2.99956	4.10661	0.0399023	0.0251428	0.143072	0.133404
chr7	6812420	6812510	3478763	0	-	0.488889	(0.476,0.515]	chr7	325560	5	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CCZ1B	ENSG00000146574.16	ENST00000316731.13:ENST00000626257.2:ENST00000462378.1:ENST00000485620.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	48	2	2.69967	2.99953	3.29939	0.0195838	0.00211868	0.109483	0.0425644
chr8	30809689	30809789	3933120	0	-	0.51	(0.476,0.515]	chr8	360327	3	SS5_PROX	SS5_PROX:INTRON	PPP2CB	ENSG00000104695.13	ENST00000221138.9:ENST00000518564.1:ENST00000518243.5:ENST00000520056.1:ENST00000520500.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	48	2	2.69967	2.99953	3.29939	0.0195838	0.00211868	0.109483	0.0425644
chr5	222298	222396	2312248	0	+	0.377551	(0.35,0.378]	chr5	223622	16	INTRON	INTRON	SDHA	ENSG00000073578.18	ENST00000504309.5:ENST00000502379.5:ENST00000505555.5:ENST00000510361.5:ENST00000264932.11:ENST00000509632.5:ENST00000504824.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	70	2	2.59046	2.999485	3.40851	0.00528327	0.00205747	0.0656295	0.0409869
chr11	61967166	61967211	4958201	0	-	0.6	(0.57,1]	chr11	466171	1	SS5_PROX	SS5_PROX:INTRON	FTH1	ENSG00000167996.16	ENST00000529191.5:ENST00000529631.5:ENST00000530019.5:ENST00000273550.12:ENST00000534180.1:ENST00000532829.5:ENST00000620041.4:ENST00000526640.5:ENST00000534719.1:ENST00000533138.1:ENST00000529548.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	33	2	1.62753	2.999445	4.37136	0.0184812	0.00345135	0.116694	0.0517761
chr5	33443741	33443839	2335150	0	+	0.510204	(0.476,0.515]	chr5	225400	15	INTRON	INTRON	TARS1	ENSG00000113407.14	ENST00000502553.5:ENST00000514259.5:ENST00000502508.5:ENST00000508361.5:ENST00000265112.8:ENST00000455217.6:ENST00000507716.5:ENST00000509731.5:ENST00000505012.5:ENST00000513066.3:ENST00000627006.2:ENST00000626210.1:ENST00000506040.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	65	2	2.21677	2.9994449999999997	3.78212	0.0207026	2.36145e-4	0.110999	0.0136195
chr7	73041821	73041921	3330603	0	+	0.36	(0.35,0.378]	chr7	309667	4	SS5_PROX	SS5_PROX:INTRON	PMS2P8:ENSG00000285702	ENSG00000273897.1:ENSG00000285702.1	ENST00000380410.6:ENST00000650609.1	lncRNA	lncRNA	lncRNA:unprocessed_pseudogene	lncRNA:unprocessed_pseudogene	2	52	2	2.78212	2.9994449999999997	3.21677	0.0168532	0.00313804	0.103549	0.0514466
chr15	88912023	88912123	6256830	0	-	0.58	(0.57,1]	chr15	596902	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	MFGE8	ENSG00000140545.16	ENST00000268150.13:ENST00000558018.5:ENST00000558029.6:ENST00000695566.1:ENST00000268151.11:ENST00000566497.5:ENST00000695774.1:ENST00000542878.5:ENST00000695567.1:ENST00000695568.1:ENST00000695569.1:ENST00000695570.1:ENST00000559997.5:ENST00000558352.5:ENST00000558773.1:ENST00000557944.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	68	2	2.36717	2.999205	3.63124	2.87208e-4	2.52506e-4	0.0150568	0.014715
chr16	67031471	67031570	6365565	0	+	0.414141	(0.408,0.44]	chr16	611409	9	INTRON	INTRON	CBFB	ENSG00000067955.15	ENST00000651988.1:ENST00000652360.1:ENST00000561924.6:ENST00000290858.11:ENST00000412916.7:ENST00000564034.6:ENST00000650873.1:ENST00000563939.3:ENST00000565389.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	49	2	2.89193	2.99917	3.10641	0.00950364	0.00555646	0.0863579	0.0648867
chr15	87683075	87683175	6256385	0	-	0.42	(0.408,0.44]	chr15	596826	1397	INTRON	INTRON	ENSG00000259560	ENSG00000259560.2	ENST00000665121.1:ENST00000560439.1	lncRNA	lncRNA	lncRNA	lncRNA	5	106	2	2.60785	2.99913	3.39041	0.00146754	1.80518e-4	0.035104	0.0121877
chr7	111291192	111291292	3621394	0	-	0.41	(0.408,0.44]	chr7	337093	3273	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	106	2	2.60785	2.99913	3.39041	0.00146754	1.80518e-4	0.035104	0.0121877
chr22	19106157	19106257	7551852	0	-	0.51	(0.476,0.515]	chr22	771903	163	INTRON	INTRON	DGCR2	ENSG00000070413.20	ENST00000537045.5:ENST00000545799.5:ENST00000263196.12:ENST00000389262.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	65	2	2.69886	2.999125	3.29939	0.00385209	0.00211868	0.0542786	0.0425644
chr7	127808272	127808372	3403973	0	+	0.52	(0.515,0.57]	chr7	318140	3	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000468166.5:ENST00000465900.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	203	2	2.56884	2.999105	3.42937	3.9691e-5	4.42543e-6	0.00510896	0.00154502
chr1	42225987	42226086	431338	0	-	0.313131	(0.28,0.32]	chr1	52305	198	INTRON	INTRON	FOXJ3	ENSG00000198815.9	ENST00000372573.5:ENST00000372572.5:ENST00000361776.5:ENST00000545068.5:ENST00000361346.6:ENST00000445886.5	protein_coding	protein_coding	protein_coding	protein_coding	2	35	2	1.96475	2.9991000000000003	4.03345	0.0704058	0.0428385	0.184298	0.162255
chr1	200609228	200609328	617629	0	-	0.46	(0.44,0.476]	chr1	73075	3	SS3_PROX	SS3_PROX:INTRON	KIF14	ENSG00000118193.12	ENST00000614960.4:ENST00000367350.5	protein_coding	protein_coding	protein_coding	protein_coding	2	48	2	2.97451	2.999085	3.02366	0.00853825	0.00603307	0.0780043	0.0700813
chrX	2453362	2453462	7745140	0	-	0.47	(0.44,0.476]	chrX	792966	277	INTRON	INTRON	DHRSX	ENSG00000169084.15	ENST00000334651.11:ENST00000412516.7:ENST00000444280.6:ENST00000441131.7:ENST00000478825.7:ENST00000430536.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	48	2	2.97451	2.999085	3.02366	0.00853825	0.00603307	0.0780043	0.0700813
chr12	27725767	27725867	5099144	0	+	0.38	(0.378,0.408]	chr12	481822	1	SS5_PROX	SS5_PROX:INTRON	MRPS35	ENSG00000061794.13	ENST00000536569.1:ENST00000081029.8:ENST00000538315.5:ENST00000542791.1:ENST00000542199.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	50	2	2.66785	2.9990550000000002	3.33026	0.0224639	0.00189824	0.11692	0.0402736
chr12	120562251	120562347	5236053	0	+	0.385417	(0.378,0.408]	chr12	496896	10	INTRON	INTRON	RNF10	ENSG00000022840.17	ENST00000325954.9:ENST00000542438.1:ENST00000413266.6:ENST00000542207.5:ENST00000543675.5:ENST00000537740.1:ENST00000537376.1:ENST00000546262.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	50	2	2.66785	2.9990550000000002	3.33026	0.0224639	0.00189824	0.11692	0.0402736
chr14	55287854	55287954	5725960	0	+	0.39	(0.378,0.408]	chr14	543454	24	INTRON	INTRON	FBXO34	ENSG00000178974.11	ENST00000681400.1:ENST00000681904.1:ENST00000679934.1:ENST00000681074.1:ENST00000680682.1:ENST00000680658.1:ENST00000313833.5:ENST00000554940.1:ENST00000440021.1:ENST00000555087.1:ENST00000557647.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	50	2	2.66785	2.9990550000000002	3.33026	0.0224639	0.00189824	0.11692	0.0402736
chr19	48120558	48120657	7197281	0	-	0.383838	(0.378,0.408]	chr19	729420	5	UTR3	UTR3:EXON_MRNA:INTRON	LIG1	ENSG00000105486.14	ENST00000263274.12:ENST00000536218.5:ENST00000427526.6:ENST00000594759.5:ENST00000594067.5:ENST00000601091.5:ENST00000613670.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	50	2	2.66785	2.9990550000000002	3.33026	0.0224639	0.00189824	0.11692	0.0402736
chr20	49079513	49079611	7284131	0	+	0.408163	(0.378,0.408]	chr20	740884	5	INTRON	INTRON	CSE1L	ENSG00000124207.17	ENST00000396192.7:ENST00000262982.3	protein_coding	protein_coding	protein_coding	protein_coding	2	50	2	2.66785	2.9990550000000002	3.33026	0.0224639	0.00189824	0.11692	0.0402736
chr2	167849818	167849918	1258298	0	-	0.51	(0.476,0.515]	chr2	133322	342	INTRON	INTRON	B3GALT1-AS1	ENSG00000235335.3	ENST00000430546.2:ENST00000657553.1:ENST00000670221.1:ENST00000436982.2	lncRNA	lncRNA	lncRNA	lncRNA	11	217	2	2.77711	2.9989299999999997	3.22075	9.26963e-5	6.08956e-6	0.00857086	0.00173029
chr1	21134601	21134701	393207	0	-	0.44	(0.408,0.44]	chr1	46836	216	INTRON	INTRON	EIF4G3	ENSG00000075151.24	ENST00000374935.7:ENST00000602326.6:ENST00000685872.1:ENST00000686579.1:ENST00000688741.1:ENST00000400422.6:ENST00000634879.2:ENST00000693470.1:ENST00000685814.1:ENST00000356916.7:ENST00000682284.1:ENST00000438975.5:ENST00000411888.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	145	2	2.71189	2.998775	3.28566	3.3885e-4	6.60258e-5	0.0163824	0.0071649
chr4	2487210	2487310	1912005	0	+	0.41	(0.408,0.44]	chr4	191918	56	INTRON	INTRON	RNF4	ENSG00000063978.16	ENST00000503659.5:ENST00000504224.5:ENST00000541204.5:ENST00000502316.5:ENST00000509388.5:ENST00000507247.5:ENST00000314289.13:ENST00000511843.5:ENST00000509258.5:ENST00000513284.5:ENST00000504782.5:ENST00000507784.5:ENST00000513578.5:ENST00000511859.5:ENST00000511892.5:ENST00000513643.5:ENST00000503123.5:ENST00000509206.1:ENST00000506706.5:ENST00000511600.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	67	2	2.33431	2.998705	3.6631	0.0129219	6.21419e-4	0.0990564	0.0229151
chr17	29409599	29409698	6585828	0	+	0.40404	(0.378,0.408]	chr17	640377	56	INTRON	INTRON	TAOK1	ENSG00000160551.12	ENST00000261716.8:ENST00000583121.5:ENST00000587277.1:ENST00000536202.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	50	2	2.9917	2.99869	3.00568	0.00811866	0.0068789	0.0766625	0.0749442
chr16	8015923	8016023	6440668	0	-	0.26	[0,0.28]	chr16	620351	83	INTRON	INTRON	ENSG00000260289	ENSG00000260289.2	ENST00000670665.1:ENST00000654046.1:ENST00000567103.2	lncRNA	lncRNA	lncRNA	lncRNA	2	73	2	2.63238	2.998635	3.36489	0.0259691	0.00388509	0.133676	0.0544269
chr7	92125052	92125152	3568917	0	-	0.55	(0.515,0.57]	chr7	332463	8	INTRON	INTRON	CYP51A1:ENSG00000289027	ENSG00000001630.18:ENSG00000289027.1	ENST00000691309.1:ENST00000003100.13:ENST00000692281.1:ENST00000693096.1:ENST00000450723.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	118	2	2.99316	2.99848	3.0038	9.21623e-4	1.88504e-5	0.0278396	0.00332085
chr3	141879260	141879360	1526101	0	+	0.29	(0.28,0.32]	chr3	159005	13	INTRON	INTRON	ATP1B3	ENSG00000069849.11	ENST00000475483.5:ENST00000465172.5:ENST00000286371.8:ENST00000466678.5:ENST00000462082.1:ENST00000495216.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	97	2	2.53475	2.998425	3.4621	0.00257029	0.00218379	0.0466761	0.0417893
chr1	21779159	21779259	396830	0	-	0.37	(0.35,0.378]	chr1	47345	210	INTRON	INTRON	USP48	ENSG00000090686.16	ENST00000400301.5:ENST00000308271.14:ENST00000529637.5:ENST00000421625.6:ENST00000527823.5:ENST00000532737.1:ENST00000489108.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	65	2	1.60373	2.99838	4.39303	0.0237246	0.016652900000000002	0.118716	0.110511
chr15	82539682	82539781	6247428	0	-	0.383838	(0.378,0.408]	chr15	596174	2	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPS17	ENSG00000182774.13	ENST00000647841.1:ENST00000561157.5:ENST00000558397.1:ENST00000561068.5:ENST00000560612.1:ENST00000560639.1:ENST00000559776.1:ENST00000560229.6:ENST00000559273.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:non_stop_decay:nonsense_mediated_decay	24	548	2	2.73768	2.99836	3.25904	1.88499e-5	3.81254e-7	0.00332085	3.44559e-4
chr12	68616050	68616150	5161256	0	+	0.56	(0.515,0.57]	chr12	488573	46	INTRON	INTRON	RAP1B	ENSG00000127314.18	ENST00000460800.5:ENST00000393436.9:ENST00000250559.14:ENST00000425247.6:ENST00000501412.2:ENST00000450214.6:ENST00000463493.5:ENST00000537460.5:ENST00000341355.9:ENST00000538283.5:ENST00000541167.5:ENST00000422358.6:ENST00000489473.6:ENST00000545270.5:ENST00000538980.5:ENST00000543393.5:ENST00000542018.5:ENST00000540209.5:ENST00000378985.7:ENST00000453560.6:ENST00000534899.5:ENST00000542145.5:ENST00000539091.5:ENST00000535492.5:ENST00000540781.5:ENST00000485252.6:ENST00000538877.5:ENST00000541386.5:ENST00000543697.5:ENST00000545720.6:ENST00000541216.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	28	2	1.7074	2.9983049999999998	4.28921	0.0779432	0.00990051	0.196685	0.0877296
chr17	30849086	30849185	6590600	0	+	0.525253	(0.515,0.57]	chr17	640948	38	INTRON	INTRON	ATAD5	ENSG00000176208.9	ENST00000321990.5:ENST00000578295.5:ENST00000585133.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:non_stop_decay	2	28	2	1.7074	2.9983049999999998	4.28921	0.0779432	0.00990051	0.196685	0.0877296
chr19	58483431	58483531	7218127	0	-	0.53	(0.515,0.57]	chr19	733338	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	SLC27A5	ENSG00000083807.10	ENST00000595851.5	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	2	28	2	1.7074	2.9983049999999998	4.28921	0.0779432	0.00990051	0.196685	0.0877296
chr8	33798415	33798513	3731513	0	+	0.540816	(0.515,0.57]	chr8	346787	16	INTRON	INTRON	ENSG00000253642	ENSG00000253642.6	ENST00000523063.5:ENST00000517292.2:ENST00000523336.2	lncRNA	lncRNA	lncRNA	lncRNA	2	28	2	1.7074	2.9983049999999998	4.28921	0.0779432	0.00990051	0.196685	0.0877296
chr22	23190097	23190197	7483299	0	+	0.45	(0.44,0.476]	chr22	763531	75	INTRON	INTRON	BCR	ENSG00000186716.21	ENST00000479188.5:ENST00000359540.7:ENST00000305877.13	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	253	2	2.61635	2.99829	3.38023	5.79322e-5	4.63189e-6	0.00622636	0.00158097
chr12	119669506	119669590	5234846	0	+	0.511905	(0.476,0.515]	chr12	496679	2	UTR5	UTR5:EXON_MRNA:INTRON	PRKAB1	ENSG00000111725.11	ENST00000541640.5:ENST00000229328.10:ENST00000537400.1:ENST00000630317.1:ENST00000540121.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	66	2	2.8863	2.998255	3.11021	0.0111679	5.02606e-4	0.0877435	0.020217099999999998
chr6	17660557	17660656	3065739	0	-	0.242424	[0,0.28]	chr6	284824	83	INTRON	INTRON	NUP153	ENSG00000124789.12	ENST00000613258.4:ENST00000537253.5:ENST00000262077.3	protein_coding	protein_coding	protein_coding	protein_coding	7	216	2	2.59765	2.998245	3.39884	0.00365944	1.7013e-5	0.0535094	0.0031337
chr16	21516129	21516228	6461518	0	-	0.393939	(0.378,0.408]	chr16	623383	96	INTRON	INTRON	SMG1P3	ENSG00000180747.15	ENST00000522841.6:ENST00000437413.2:ENST00000435197.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	4	80	2	2.63629	2.998135	3.35998	0.00230615	0.001315	0.0428247	0.0333932
chr19	18512322	18512422	7152917	0	-	0.49	(0.476,0.515]	chr19	722886	365	INTRON	INTRON	ELL	ENSG00000105656.13	ENST00000262809.9:ENST00000594635.6:ENST00000596915.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	121	2	2.7567	2.99808	3.23946	3.76694e-4	2.59571e-4	0.017994	0.014326
chr7	124885265	124885365	3633323	0	-	0.37	(0.35,0.378]	chr7	337701	24	INTRON	INTRON	POT1	ENSG00000128513.16	ENST00000430927.6:ENST00000357628.8:ENST00000393329.5:ENST00000653274.1:ENST00000661898.1:ENST00000664330.1:ENST00000657892.1:ENST00000662531.1:ENST00000653241.1:ENST00000653892.1:ENST00000664366.1:ENST00000655761.1:ENST00000668382.1:ENST00000654766.1:ENST00000657333.1:ENST00000653819.1:ENST00000609106.5:ENST00000607932.5:ENST00000608057.5:ENST00000446993.6:ENST00000429326.6:ENST00000609702.5:ENST00000669195.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	96	2	2.15229	2.998055	3.84382	0.00545124	3.33157e-4	0.0669407	0.016912
chr1	244844559	244844657	672885	0	-	0.55102	(0.515,0.57]	chr1	79586	41	UTR3	UTR3:EXON_MRNA:INTRON	HNRNPU	ENSG00000153187.20	ENST00000475997.6:ENST00000366527.4:ENST00000649899.1:ENST00000638230.1:ENST00000640657.1	protein_coding	retained_intron	protein_coding	retained_intron:nonsense_mediated_decay	45	730	2	2.87491	2.997985	3.12106	1.44753e-7	9.72971e-8	1.72951e-4	1.38682e-4
chr2	202231042	202231142	1314998	0	-	0.47	(0.44,0.476]	chr2	137914	1	SS5_PROX	SS5_PROX:INTRON	SUMO1	ENSG00000116030.17	ENST00000392246.7:ENST00000392245.5:ENST00000409368.5:ENST00000392244.7:ENST00000409712.5:ENST00000409181.1:ENST00000409498.6:ENST00000409205.5:ENST00000409627.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	49	2	2.5364	2.997985	3.45957	0.0309324	0.00106385	0.13151	0.0300133
chr19	8465734	8465827	7010979	0	+	0.462366	(0.44,0.476]	chr19	696163	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HNRNPM	ENSG00000099783.12	ENST00000348943.7:ENST00000600092.5:ENST00000325495.9:ENST00000600806.5:ENST00000620401.4:ENST00000594907.5:ENST00000596984.5:ENST00000601645.5:ENST00000598367.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	91	2	2.68583	2.99797	3.31011	0.00259023	3.91317e-4	0.0452934	0.0178091
chr19	44895658	44895758	7077882	0	+	0.52	(0.515,0.57]	chr19	707775	12	INTRON	INTRON	TOMM40	ENSG00000130204.13	ENST00000252487.9:ENST00000405636.6:ENST00000592434.5:ENST00000426677.7:ENST00000592041.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	57	2	2.804	2.99789	3.19178	0.00289534	0.00215855	0.0494641	0.0417866
chr3	32491797	32491886	1649542	0	-	0.382022	(0.378,0.408]	chr3	169092	2	CDS	CDS:EXON_MRNA	CMTM6	ENSG00000091317.8	ENST00000205636.4:ENST00000495177.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	37	2	1.78011	2.99787	4.21563	0.0356367	0.0315429	0.151629	0.13151
chr15	27160576	27160676	5984049	0	+	0.26	[0,0.28]	chr15	569164	1334	INTRON	INTRON	GABRG3	ENSG00000182256.13	ENST00000615808.5:ENST00000555083.5	protein_coding	protein_coding	protein_coding	protein_coding	4	112	2	2.13236	2.99781	3.86326	0.017376	3.23716e-4	0.104294	0.0159645
chr21	37443364	37443463	7406995	0	+	0.414141	(0.408,0.44]	chr21	754891	126	INTRON	INTRON	DYRK1A	ENSG00000157540.22	ENST00000646523.1:ENST00000647425.1:ENST00000647188.2:ENST00000647504.1:ENST00000644942.1:ENST00000338785.8:ENST00000643624.1:ENST00000643551.1:ENST00000426672.6:ENST00000398960.7:ENST00000646548.1:ENST00000645424.1:ENST00000643854.1:ENST00000455097.6:ENST00000642309.1:ENST00000645774.1:ENST00000398956.2	protein_coding	protein_coding	protein_coding	protein_coding	7	110	2	2.36583	2.997775	3.62972	7.19047e-4	6.26455e-4	0.0246202	0.0225401
chr5	146472371	146472470	2515761	0	+	0.292929	(0.28,0.32]	chr5	240338	4	INTRON	INTRON	TCERG1	ENSG00000113649.13	ENST00000507175.5:ENST00000296702.9:ENST00000679501.2:ENST00000394421.7:ENST00000549332.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	81	2	2.59504	2.997725	3.40041	0.00582473	0.00273088	0.0687439	0.0467642
chr19	1972028	1972126	6996062	0	+	0.581633	(0.57,1]	chr19	693383	17	INTRON	INTRON	CSNK1G2	ENSG00000133275.16	ENST00000255641.13:ENST00000591752.5:ENST00000589350.2:ENST00000589385.5	protein_coding	protein_coding	protein_coding	protein_coding	4	42	2	2.43624	2.99772	3.5592	0.00279586	4.21089e-4	0.0469265	0.0183576
chr10	102449815	102449884	4514164	0	+	0.391304	(0.378,0.408]	chr10	415989	1	EXON_LNCRNA	EXON_LNCRNA	C10orf95-AS1	ENSG00000269609.6	ENST00000473970.3:ENST00000494270.7:ENST00000492465.2:ENST00000663480.1	lncRNA	lncRNA	lncRNA	lncRNA	12	245	2	2.64295	2.9976849999999997	3.35242	1.56725e-4	2.5486e-6	0.0113858	0.00101667
chr1	20756365	20756465	389549	0	-	0.4	(0.378,0.408]	chr1	46531	61	INTRON	INTRON	HP1BP3	ENSG00000127483.19	ENST00000438032.6:ENST00000312239.10:ENST00000375003.6:ENST00000419948.5	protein_coding	protein_coding	protein_coding	protein_coding	5	91	2	2.31917	2.99763	3.67609	0.00252588	6.32264e-4	0.0465056	0.0231174
chr16	21514729	21514829	6461504	0	-	0.58	(0.57,1]	chr16	623383	82	INTRON	INTRON	SMG1P3	ENSG00000180747.15	ENST00000522841.6:ENST00000437413.2:ENST00000435197.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	9	94	2	2.98684	2.997495	3.00815	3.19811e-5	1.3143e-5	0.00451543	0.00286967
chr10	68510592	68510691	4640112	0	-	0.474747	(0.44,0.476]	chr10	426794	35	INTRON	INTRON	SLC25A16	ENSG00000122912.15	ENST00000609923.6:ENST00000265870.7:ENST00000493963.5:ENST00000491102.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	32	2	1.77101	2.99747	4.22393	0.0693975	0.0162322	0.184298	0.109464
chr15	90545536	90545636	6099884	0	+	0.47	(0.44,0.476]	chr15	580749	50	INTRON	INTRON	CRTC3	ENSG00000140577.17	ENST00000268184.11:ENST00000420329.6:ENST00000691029.1:ENST00000686240.1:ENST00000560098.5:ENST00000561218.5:ENST00000692149.1:ENST00000558619.5:ENST00000560927.1:ENST00000687075.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	32	2	1.77101	2.99747	4.22393	0.0693975	0.0162322	0.184298	0.109464
chr5	178771434	178771533	2779176	0	-	0.464646	(0.44,0.476]	chr5	262210	24	INTRON	INTRON	AACSP1	ENSG00000250420.8	ENST00000503486.6:ENST00000521412.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	2	32	2	1.77101	2.99747	4.22393	0.0693975	0.0162322	0.184298	0.109464
chr9	120760565	120760665	4335129	0	-	0.41	(0.408,0.44]	chr9	398218	37	UTR3	UTR3:EXON_MRNA:INTRON	FBXW2	ENSG00000119402.18	ENST00000493559.1:ENST00000684405.1:ENST00000684001.1:ENST00000684047.1:ENST00000608872.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	16	317	2	2.94063	2.9973799999999997	3.05413	1.57157e-5	2.75783e-6	0.00318411	0.00106635
chr16	29596759	29596859	6471568	0	-	0.47	(0.44,0.476]	chr16	625301	19	INTRON	INTRON	ENSG00000288632	ENSG00000288632.1	ENST00000675579.1	lncRNA	lncRNA	lncRNA	lncRNA	2	49	2	2.81896	2.9973400000000003	3.17572	0.0120766	0.00427037	0.0962311	0.0573912
chr15	82381152	82381252	6075792	0	+	0.36	(0.35,0.378]	chr15	578727	254	INTRON	INTRON	UBE2Q2P2	ENSG00000259429.5	ENST00000618775.4	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	14	293	2	2.97188	2.997325	3.02277	6.03348e-5	4.38567e-6	0.00682472	0.00140668
chr21	10341451	10341546	7427436	0	-	0.326316	(0.32,0.35]	chr21	757681	6	INTRON	INTRON	ENSG00000277693	ENSG00000277693.2	ENST00000622592.1:ENST00000616952.1:ENST00000667012.1	lncRNA	lncRNA	lncRNA	lncRNA	8	177	2	2.53478	2.99732	3.45986	5.71371e-4	1.01088e-4	0.0220865	0.00849135
chr18	56605081	56605181	6979560	0	-	0.37	(0.35,0.378]	chr18	690512	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	TXNL1	ENSG00000091164.13	ENST00000217515.11:ENST00000590954.5:ENST00000587807.5:ENST00000589931.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	41	2	2.02424	2.99728	3.97032	0.0578667	0.0164934	0.167723	0.110301
chr21	44303774	44303874	7417102	0	+	0.58	(0.57,1]	chr21	756094	1	SS3_PROX	SS3_PROX:INTRON	PFKL	ENSG00000141959.17	ENST00000397961.6:ENST00000349048.9:ENST00000496824.5:ENST00000466134.5:ENST00000628044.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	58	2	2.81057	2.997275	3.18398	0.00169295	3.84422e-5	0.0381936	0.00528498
chr15	85096154	85096254	6090085	0	+	0.34	(0.32,0.35]	chr15	579554	46	INTRON	INTRON	PDE8A	ENSG00000073417.15	ENST00000310298.8:ENST00000557957.5:ENST00000394553.6:ENST00000339708.9:ENST00000478717.5:ENST00000485596.5:ENST00000559742.5:ENST00000559086.5:ENST00000560789.5:ENST00000557819.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	101	2	2.63115	2.99716	3.36317	0.00608073	1.69213e-4	0.0676501	0.0112853
chr6	20550396	20550495	2828542	0	+	0.414141	(0.408,0.44]	chr6	265644	13	INTRON	INTRON	CDKAL1	ENSG00000145996.11	ENST00000274695.8:ENST00000613575.4:ENST00000378610.1	protein_coding	protein_coding	protein_coding	protein_coding	3	65	2	2.53313	2.9970850000000002	3.46104	0.00739595	0.00105552	0.074277	0.0299229
chr1	167789520	167789620	248452	0	+	0.39	(0.378,0.408]	chr1	29523	17	UTR3	UTR3:EXON_MRNA	MPZL1	ENSG00000197965.12	ENST00000359523.7:ENST00000392121.7	protein_coding	protein_coding	protein_coding	protein_coding	5	93	2	2.1245	2.9970049999999997	3.86951	0.00724232	1.55755e-4	0.0729826	0.0106835
chr5	54372163	54372263	2354344	0	+	0.32	(0.28,0.32]	chr5	227061	315	INTRON	INTRON	LINC01033	ENSG00000249069.8	ENST00000665899.1:ENST00000653566.1:ENST00000655801.1:ENST00000654906.1:ENST00000667636.1:ENST00000665869.1:ENST00000664079.1:ENST00000659703.1:ENST00000662351.1:ENST00000523194.7:ENST00000665795.1:ENST00000667992.1:ENST00000662022.1:ENST00000657771.1:ENST00000517934.1	lncRNA	lncRNA	lncRNA	lncRNA	7	182	2	2.85561	2.99695	3.13829	2.81759e-4	2.33841e-4	0.0154561	0.0135358
chr1	204543640	204543739	297701	0	+	0.454545	(0.44,0.476]	chr1	34313	3	INTRON	INTRON	MDM4	ENSG00000198625.14	ENST00000367183.7:ENST00000391947.6:ENST00000454264.6:ENST00000612738.4:ENST00000614459.4:ENST00000616250.4:ENST00000367182.8:ENST00000463049.5:ENST00000470908.5:ENST00000471783.1:ENST00000507825.3:ENST00000367179.7:ENST00000444261.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	36	2	1.75627	2.9969099999999997	4.23755	0.0380723	0.0263357	0.157702	0.122221
chr16	4761672	4761770	6438412	0	-	0.459184	(0.44,0.476]	chr16	620057	7	INTRON	INTRON	ZNF500	ENSG00000103199.14	ENST00000219478.11:ENST00000545009.1:ENST00000589422.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	36	2	1.75627	2.9969099999999997	4.23755	0.0380723	0.0263357	0.157702	0.122221
chr19	50391684	50391783	7092751	0	+	0.626263	(0.57,1]	chr19	710763	35	INTRON	INTRON	POLD1	ENSG00000062822.16	ENST00000600859.5:ENST00000600746.2:ENST00000599857.7:ENST00000613923.6:ENST00000601098.6:ENST00000643407.1:ENST00000440232.7:ENST00000595904.6:ENST00000593887.2:ENST00000687454.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	35	2	2.81057	2.996785	3.183	0.00254356	0.00169295	0.0448135	0.0381936
chr2	55636137	55636236	1125160	0	-	0.282828	(0.28,0.32]	chr2	120695	22	UTR3	UTR3:EXON_MRNA	PNPT1	ENSG00000138035.15	ENST00000447944.7:ENST00000415374.5:ENST00000260604.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	82	2	2.4721	2.99668	3.52126	0.00906617	0.00175369	0.0854289	0.0376491
chr4	79312558	79312658	2168673	0	-	0.5	(0.476,0.515]	chr4	213818	181	INTRON	INTRON	NAA11	ENSG00000156269.5	ENST00000511542.1:ENST00000513733.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	4	77	2	2.65911	2.996635	3.33416	0.00230489	0.00116074	0.0428247	0.0314098
chr3	32502645	32502745	1649652	0	-	0.7	(0.57,1]	chr3	169099	1	CDS_START	CDS_START:CDS:EXON_MRNA	CMTM6	ENSG00000091317.8	ENST00000205636.4:ENST00000495177.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	35	2	2.56996	2.996595	3.42323	0.00499145	8.58388e-4	0.0646039	0.0267428
chr17	49751245	49751344	6794027	0	-	0.464646	(0.44,0.476]	chr17	670428	41	INTRON	INTRON	FAM117A	ENSG00000121104.8	ENST00000240364.7:ENST00000513602.5:ENST00000503855.5:ENST00000514018.5:ENST00000505159.5:ENST00000506156.1:ENST00000509347.5:ENST00000503720.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	104	2	2.38636	2.99652	3.60668	0.0047296	3.22849e-5	0.0600445	0.00453487
chr13	95733649	95733749	5517764	0	+	0.4	(0.378,0.408]	chr13	527661	80	INTRON	INTRON	DNAJC3	ENSG00000102580.15	ENST00000602402.6:ENST00000376795.6	protein_coding	protein_coding	protein_coding	protein_coding	2	52	2	2.38873	2.99651	3.60429	0.0458857	5.71664e-4	0.149888	0.0217398
chr3	100730206	100730300	1468145	0	+	0.37234	(0.35,0.378]	chr3	153861	5	INTRON	INTRON	TFG	ENSG00000114354.15	ENST00000675047.1:ENST00000490574.6:ENST00000675543.1:ENST00000676308.1:ENST00000675499.1:ENST00000674699.1:ENST00000418917.7:ENST00000675553.1:ENST00000620299.5:ENST00000675246.1:ENST00000675692.1:ENST00000676276.1:ENST00000676054.1:ENST00000675890.1:ENST00000675011.1:ENST00000675586.1:ENST00000674645.1:ENST00000675958.1:ENST00000674798.1:ENST00000676010.1:ENST00000675591.1:ENST00000675420.1:ENST00000674615.1:ENST00000676431.1:ENST00000674758.1:ENST00000240851.9:ENST00000675243.1:ENST00000676111.1:ENST00000476228.5:ENST00000463568.6:ENST00000676395.1:ENST00000487505.6:ENST00000615993.2:ENST00000676455.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	74	2	2.72497	2.996505	3.26804	0.0198266	2.47065e-4	0.109608	0.0139149
chr1	89892529	89892629	160241	0	+	0.56	(0.515,0.57]	chr1	17285	455	INTRON	INTRON	LRRC8D	ENSG00000171492.14	ENST00000525774.5:ENST00000337338.9:ENST00000394593.7:ENST00000532201.5:ENST00000414841.1:ENST00000527156.1:ENST00000441269.2	protein_coding	protein_coding	protein_coding	protein_coding	4	74	2	2.96467	2.99643	3.02819	8.94279e-4	7.81057e-4	0.0273458	0.0257168
chr3	15836892	15836992	1624216	0	-	0.51	(0.476,0.515]	chr3	168034	222	INTRON	INTRON	ANKRD28	ENSG00000206560.12	ENST00000399451.6:ENST00000412318.5:ENST00000439830.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	77	2	2.25138	2.99641	3.74144	0.00692374	4.08784e-4	0.0753208	0.0185763
chr22	41106830	41106929	7521636	0	+	0.434343	(0.408,0.44]	chr22	768515	134	INTRON	INTRON	EP300	ENSG00000100393.14	ENST00000263253.9:ENST00000674155.1	protein_coding	protein_coding	protein_coding	protein_coding	6	125	2	2.69846	2.996335	3.29421	0.00127877	3.47956e-5	0.0326395	0.00469546
chr16	18160660	18160759	6454241	0	-	0.282828	(0.28,0.32]	chr16	621964	92	INTRON	INTRON	ENSG00000260242	ENSG00000260242.1	ENST00000563866.1	lncRNA	lncRNA	lncRNA	lncRNA	3	88	2	2.13651	2.99625	3.85599	0.0265696	4.63052e-4	0.134088	0.0198709
chr14	23064802	23064895	5842662	0	-	0.591398	(0.57,1]	chr14	555590	2	SS3_PROX	SS3_PROX:INTRON	ACIN1	ENSG00000100813.15	ENST00000605057.6:ENST00000557515.5:ENST00000262710.5:ENST00000457657.5:ENST00000357481.6:ENST00000338631.10:ENST00000473758.5:ENST00000397341.7:ENST00000555053.5:ENST00000555566.1:ENST00000557039.1:ENST00000555807.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	49	2	1.87901	2.996235	4.11346	0.0152867	1.70324e-5	0.108569	0.00330681
chr16	67036855	67036955	6365621	0	+	0.36	(0.35,0.378]	chr16	611415	1	SS5_PROX	SS5_PROX:INTRON	CBFB	ENSG00000067955.15	ENST00000651988.1:ENST00000652360.1:ENST00000561924.6:ENST00000290858.11:ENST00000412916.7:ENST00000564034.6:ENST00000650873.1:ENST00000563939.3:ENST00000565389.1:ENST00000567947.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	52	2	2.94111	2.996235	3.05136	0.0104563	0.00578894	0.0855102	0.0684334
chr3	140965023	140965122	1523185	0	+	0.363636	(0.35,0.378]	chr3	158669	19	UTR3	UTR3:EXON_MRNA:INTRON	SLC25A36	ENSG00000114120.14	ENST00000446041.6:ENST00000324194.12:ENST00000648615.1:ENST00000393015.8:ENST00000507429.5:ENST00000502594.5:ENST00000453248.6:ENST00000631654.1:ENST00000513887.5:ENST00000512023.5:ENST00000512506.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	52	2	2.94111	2.996235	3.05136	0.0104563	0.00578894	0.0855102	0.0684334
chr8	140611786	140611886	4076328	0	-	0.36	(0.35,0.378]	chr8	370285	60	INTRON	INTRON	AGO2	ENSG00000123908.12	ENST00000220592.10:ENST00000519980.5:ENST00000523609.5:ENST00000517293.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	52	2	2.94111	2.996235	3.05136	0.0104563	0.00578894	0.0855102	0.0684334
chr5	172768285	172768380	2772749	0	-	0.347368	(0.32,0.35]	chr5	260976	3	UTR3	UTR3:EXON_MRNA	DUSP1	ENSG00000120129.6	ENST00000239223.4	protein_coding	protein_coding	protein_coding	protein_coding	2	59	2	2.64129	2.996225	3.35116	0.0222819	0.00283808	0.124303	0.0473151
chr4	24538062	24538161	2118534	0	-	0.252525	[0,0.28]	chr4	209201	10	EXON_LNCRNA	EXON_LNCRNA:INTRON	DHX15	ENSG00000109606.13	ENST00000336812.5:ENST00000508032.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	60	2	1.37159	2.9962150000000003	4.62084	0.0634918	0.0313633	0.198135	0.13151
chr10	37849301	37849400	4602516	0	-	0.191919	[0,0.28]	chr10	423985	108	INTRON	INTRON	ZNF248	ENSG00000198105.16	ENST00000615949.6:ENST00000485560.5:ENST00000395867.8:ENST00000357328.8:ENST00000611278.4:ENST00000374648.7:ENST00000395873.7:ENST00000395874.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	69	2	2.54624	2.996175	3.44611	0.0388449	0.00185186	0.143072	0.039946
chr3	72422307	72422407	1745678	0	-	0.25	[0,0.28]	chr3	177368	418	INTRON	INTRON	RYBP	ENSG00000163602.12	ENST00000477973.5	protein_coding	protein_coding	protein_coding	protein_coding	2	69	2	2.54624	2.996175	3.44611	0.0388449	0.00185186	0.143072	0.039946
chr7	119863425	119863525	3629975	0	-	0.27	[0,0.28]	chr7	337335	622	INTRON	INTRON	LINC02476	ENSG00000225546.6	ENST00000660268.1:ENST00000431071.5:ENST00000426413.2	lncRNA	lncRNA	lncRNA	lncRNA	2	69	2	2.54624	2.996175	3.44611	0.0388449	0.00185186	0.143072	0.039946
chr1	27246508	27246608	53136	0	+	0.36	(0.35,0.378]	chr1	6792	112	INTRON	INTRON	WDTC1	ENSG00000142784.16	ENST00000319394.8:ENST00000361771.7	protein_coding	protein_coding	protein_coding	protein_coding	2	31	2	1.90405	2.996105	4.08816	0.0482651	0.046021	0.171852	0.149888
chr12	70295286	70295385	5166957	0	+	0.353535	(0.35,0.378]	chr12	489402	6	INTRON	INTRON	CNOT2	ENSG00000111596.14	ENST00000547780.5:ENST00000418359.7:ENST00000552319.5:ENST00000550160.5:ENST00000551661.5:ENST00000551132.5:ENST00000548021.5:ENST00000550641.6:ENST00000229195.8:ENST00000552915.5:ENST00000549443.5:ENST00000548741.5:ENST00000552483.5:ENST00000552422.5:ENST00000547321.5:ENST00000553020.5:ENST00000548159.5:ENST00000549750.5:ENST00000551043.5:ENST00000548599.5:ENST00000550194.5:ENST00000551873.5:ENST00000547867.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	31	2	1.90405	2.996105	4.08816	0.0482651	0.046021	0.171852	0.149888
chr17	31135700	31135800	6591541	0	+	0.37	(0.35,0.378]	chr17	641057	68	INTRON	INTRON	NF1	ENSG00000196712.20	ENST00000696138.1:ENST00000356175.7:ENST00000487476.5:ENST00000691014.1:ENST00000358273.9:ENST00000431387.8:ENST00000579081.5:ENST00000489712.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	31	2	1.90405	2.996105	4.08816	0.0482651	0.046021	0.171852	0.149888
chr7	26190452	26190551	3506121	0	-	0.363636	(0.35,0.378]	chr7	327155	9	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HNRNPA2B1	ENSG00000122566.22	ENST00000679318.1:ENST00000677339.1:ENST00000678501.1:ENST00000676903.1:ENST00000608362.2:ENST00000677631.1:ENST00000676749.1:ENST00000677574.1:ENST00000679123.1:ENST00000677906.1:ENST00000476233.2:ENST00000677669.1:ENST00000677321.1:ENST00000678277.1:ENST00000677571.1:ENST00000679124.1:ENST00000676932.1:ENST00000678973.1:ENST00000678183.1:ENST00000679021.1:ENST00000678035.1:ENST00000677075.1:ENST00000678075.1:ENST00000678631.1:ENST00000678998.1:ENST00000490912.6:ENST00000354667.8:ENST00000618183.5:ENST00000677839.1:ENST00000677037.1:ENST00000678449.1:ENST00000679001.1:ENST00000678962.1:ENST00000676524.1:ENST00000678935.1:ENST00000678675.1:ENST00000676746.1:ENST00000356674.8:ENST00000678431.1:ENST00000678697.1:ENST00000678779.1:ENST00000676497.1:ENST00000677396.1:ENST00000360787.8:ENST00000679243.1:ENST00000677656.1:ENST00000463181.5:ENST00000678884.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	263	2	2.44499	2.9960750000000003	3.54716	1.4375e-4	6.34049e-6	0.0104146	0.00190344
chr21	44048590	44048690	7415397	0	+	0.47	(0.44,0.476]	chr21	755795	103	INTRON	INTRON	TRAPPC10	ENSG00000160218.13	ENST00000291574.9:ENST00000380221.7:ENST00000422875.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	64	2	2.59888	2.99605	3.39322	0.00487719	0.00187283	0.0640618	0.0390476
chr16	57182874	57182973	6493077	0	-	0.414141	(0.408,0.44]	chr16	627985	12	INTRON	INTRON	PSME3IP1	ENSG00000172775.17	ENST00000309137.13:ENST00000566077.5:ENST00000567439.5:ENST00000564108.5:ENST00000562324.5:ENST00000567044.5:ENST00000565458.5:ENST00000562406.5:ENST00000566584.5:ENST00000568671.5:ENST00000565760.5:ENST00000566481.5:ENST00000570184.1:ENST00000566681.1:ENST00000565353.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	14	254	2	2.37283	2.996045	3.61926	1.41153e-4	2.68926e-6	0.0102551	0.00115663
chr1	182855276	182855376	273142	0	+	0.37	(0.35,0.378]	chr1	31890	3	SS3_PROX	SS3_PROX:INTRON	DHX9	ENSG00000135829.17	ENST00000367549.4:ENST00000479271.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	106	2	2.14824	2.99603	3.84382	0.00327182	3.33157e-4	0.052643	0.016912
chr2	85544903	85544998	821626	0	+	0.378947	(0.378,0.408]	chr2	91572	13	UTR3	UTR3:EXON_MRNA	MAT2A	ENSG00000168906.13	ENST00000306434.8	protein_coding	protein_coding	protein_coding	protein_coding	57	1138	2	2.95416	2.9960199999999997	3.03788	9.84872e-7	6.51878e-8	6.15427e-4	1.10383e-4
chr2	65120896	65120996	1142870	0	-	0.46	(0.44,0.476]	chr2	122186	157	INTRON	INTRON	RAB1A	ENSG00000138069.18	ENST00000649427.1:ENST00000494188.1:ENST00000409784.8:ENST00000409892.5:ENST00000409751.1:ENST00000398529.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	42	2	1.65297	2.99598	4.33899	0.0331814	0.0206616	0.145918	0.110999
chr17	81591377	81591476	6849135	0	-	0.40404	(0.378,0.408]	chr17	678168	19	INTRON	INTRON	NPLOC4	ENSG00000182446.14	ENST00000331134.11:ENST00000374747.9:ENST00000574897.5:ENST00000572351.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	129	2	2.71418	2.995765	3.27735	0.00126468	4.08558e-5	0.0325134	0.00519615
chr20	32543543	32543642	7326502	0	-	0.444444	(0.44,0.476]	chr20	746140	73	INTRON	INTRON	NOL4L	ENSG00000197183.15	ENST00000621426.7:ENST00000201961.6	protein_coding	protein_coding	protein_coding	protein_coding	4	77	2	2.30673	2.99573	3.68473	0.0055175	5.47507e-4	0.0672816	0.0215463
chr2	183024116	183024216	1285889	0	-	0.36	(0.35,0.378]	chr2	135431	2	SS3_PROX	SS3_PROX:INTRON	NCKAP1	ENSG00000061676.15	ENST00000361354.9:ENST00000360982.2	protein_coding	protein_coding	protein_coding	protein_coding	5	99	2	2.696	2.9956500000000004	3.2953	0.0031465	4.12892e-4	0.0500431	0.0181365
chr1	19190109	19190208	386625	0	-	0.414141	(0.408,0.44]	chr1	46093	22	INTRON	INTRON	UBR4	ENSG00000127481.15	ENST00000375254.8	protein_coding	protein_coding	protein_coding	protein_coding	9	124	2	2.03096	2.9955749999999997	3.96019	0.00176663	1.56132e-4	0.0389986	0.0113571
chr18	706718	706789	6939721	0	-	0.394366	(0.378,0.408]	chr18	686442	3	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	ENOSF1	ENSG00000132199.20	ENST00000647584.2:ENST00000383578.7:ENST00000340116.12:ENST00000581475.5:ENST00000580982.5:ENST00000585128.6:ENST00000584453.5:ENST00000578651.5:ENST00000585004.5:ENST00000579053.5:ENST00000583771.1:ENST00000580605.5:ENST00000581332.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	67	2	2.51733	2.9955499999999997	3.47377	0.00808319	0.00103087	0.0766625	0.0294094
chr6	145813304	145813403	3244067	0	-	0.30303	(0.28,0.32]	chr6	301281	65	INTRON	INTRON	FBXO30	ENSG00000118496.5	ENST00000237281.5	protein_coding	protein_coding	protein_coding	protein_coding	4	109	2	2.84714	2.995485	3.14383	0.00310758	5.83228e-4	0.0498063	0.0219397
chr22	49579656	49579756	7601876	0	-	0.47	(0.44,0.476]	chr22	778566	1381	INTRON	INTRON	MIR3667HG	ENSG00000188511.13	ENST00000414287.5:ENST00000416411.1	lncRNA	lncRNA	lncRNA	lncRNA	5	103	2	2.56423	2.9954549999999998	3.42668	0.00226303	9.22416e-5	0.0425438	0.00802983
chr1	246475242	246475342	680402	0	-	0.52	(0.515,0.57]	chr1	79777	580	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000490107.6:ENST00000462422.5:ENST00000403792.7:ENST00000470863.1:ENST00000455277.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	66	2	2.41022	2.99543	3.58064	0.00332441	6.54693e-4	0.0528673	0.0233335
chr7	139104630	139104730	3656370	0	-	0.56	(0.515,0.57]	chr7	339450	145	INTRON	INTRON	ZC3HAV1	ENSG00000105939.14	ENST00000242351.10:ENST00000464606.5:ENST00000680309.1:ENST00000471652.1	protein_coding	protein_coding	protein_coding	protein_coding	4	66	2	2.41022	2.99543	3.58064	0.00332441	6.54693e-4	0.0528673	0.0233335
chr7	140380281	140380335	3661100	0	-	0.537037	(0.515,0.57]	chr7	339855	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	SLC37A3	ENSG00000157800.18	ENST00000477571.5:ENST00000326232.14:ENST00000447932.6:ENST00000340308.7:ENST00000460560.5:ENST00000490760.5:ENST00000464865.5:ENST00000469193.5:ENST00000461089.5:ENST00000462881.1:ENST00000495257.1:ENST00000467233.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	32	2	1.67758	2.9954199999999997	4.31326	0.0471728	0.0141817	0.168737	0.0959618
chr1	1256558	1256625	359012	0	-	0.701493	(0.57,1]	chr1	41435	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	UBE2J2	ENSG00000160087.21	ENST00000450390.6:ENST00000349431.11:ENST00000347370.6:ENST00000400929.6:ENST00000464036.5:ENST00000360466.6:ENST00000400930.8:ENST00000473215.5:ENST00000435198.5:ENST00000509720.5:ENST00000491779.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	35	2	2.50742	2.9953950000000003	3.48337	0.00631173	6.20854e-4	0.0687526	0.0223951
chr1	109353373	109353472	520565	0	-	0.59596	(0.57,1]	chr1	61167	20	INTRON	INTRON	SORT1	ENSG00000134243.12	ENST00000538502.5:ENST00000256637.8:ENST00000493736.5	protein_coding	protein_coding	protein_coding	protein_coding	3	35	2	2.58733	2.99533	3.40333	0.00454222	9.20604e-4	0.0595107	0.0278392
chr4	499489	499582	1907347	0	+	0.623656	(0.57,1]	chr4	191091	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	PIGG	ENSG00000174227.16	ENST00000453061.7:ENST00000504187.5:ENST00000310340.9:ENST00000504346.5:ENST00000503111.5:ENST00000502311.1:ENST00000511448.5:ENST00000383028.8:ENST00000506402.5:ENST00000509768.1:ENST00000514953.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	35	2	2.58733	2.99533	3.40333	0.00454222	9.20604e-4	0.0595107	0.0278392
chr6	119236665	119236764	3204682	0	-	0.313131	(0.28,0.32]	chr6	298302	314	INTRON	INTRON	MAN1A1	ENSG00000111885.7	ENST00000368468.4	protein_coding	protein_coding	protein_coding	protein_coding	5	132	2	2.74601	2.99521	3.24441	0.00100442	6.28233e-4	0.0292217	0.023031
chr16	85579240	85579340	6415624	0	+	0.55	(0.515,0.57]	chr16	615470	225	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	4	75	2	2.82994	2.995155	3.16037	0.00168661	4.09074e-4	0.0381778	0.0185763
chrX	77903644	77903739	7684990	0	+	0.326316	(0.32,0.35]	chrX	786822	5	INTRON	INTRON	COX7B	ENSG00000131174.7	ENST00000373335.4:ENST00000650309.2:ENST00000647835.1	protein_coding	protein_coding	protein_coding	protein_coding	4	89	2	2.4722	2.99514	3.51808	0.00307237	0.00151238	0.0509893	0.0352794
chr22	15799750	15799850	7473051	0	+	0.3	(0.28,0.32]	chr22	761953	16	INTRON	INTRON	DUXAP8	ENSG00000206195.11	ENST00000413768.5:ENST00000437781.5:ENST00000383038.7:ENST00000447898.5	lncRNA	lncRNA	lncRNA	lncRNA	3	82	2	2.59817	2.995105	3.39204	0.00753816	0.00188405	0.0748659	0.0402736
chr2	191678321	191678418	960361	0	+	0.484536	(0.476,0.515]	chr2	104274	3	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	NABP1	ENSG00000173559.15	ENST00000491331.5:ENST00000307834.9:ENST00000674262.1:ENST00000674360.1:ENST00000674406.1:ENST00000674414.1:ENST00000410026.7:ENST00000674172.1:ENST00000674187.1:ENST00000307849.7:ENST00000425611.9:ENST00000462712.5:ENST00000451500.5:ENST00000409510.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	86	2	2.93046	2.9950200000000002	3.05958	0.00118985	8.34691e-4	0.031662	0.0266389
chr4	68334870	68334968	2154729	0	-	0.27551	[0,0.28]	chr4	212267	11	INTRON	INTRON	YTHDC1	ENSG00000083896.13	ENST00000344157.9:ENST00000355665.7:ENST00000579690.5	protein_coding	protein_coding	protein_coding	protein_coding	4	55	2	1.60593	2.9949	4.38387	0.0501911	0.0433625	0.162255	0.156383
chrX	134472858	134472958	7724197	0	+	0.48	(0.476,0.515]	chrX	790155	1	SS3_PROX	SS3_PROX:INTRON	HPRT1	ENSG00000165704.15	ENST00000298556.8:ENST00000462974.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	64	2	2.365	2.99482	3.62464	0.0128901	5.079e-4	0.0926667	0.0202328
chr22	21503460	21503560	7560125	0	-	0.45	(0.44,0.476]	chr22	773318	110	INTRON	INTRON	PI4KAP2	ENSG00000183506.17	ENST00000450651.5:ENST00000467443.5:ENST00000479693.1:ENST00000476537.1:ENST00000491562.5	transcribed_unitary_pseudogene	retained_intron	transcribed_unitary_pseudogene	retained_intron:processed_transcript	11	219	2	2.88369	2.99479	3.10589	5.24117e-5	1.29835e-5	0.00631446	0.00266543
chr1	70229328	70229419	142674	0	+	0.296703	(0.28,0.32]	chr1	15986	4	INTRON	INTRON	SRSF11	ENSG00000116754.14	ENST00000370951.5:ENST00000687381.1:ENST00000370950.7:ENST00000475204.5:ENST00000370949.2:ENST00000395136.7:ENST00000473950.5:ENST00000469170.5:ENST00000486667.5:ENST00000481648.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	10	237	2	2.50875	2.99475	3.48075	2.8342e-4	5.25652e-5	0.0150559	0.00632642
chr1	150330998	150331096	221444	0	+	0.438776	(0.408,0.44]	chr1	24980	1	INTRON	INTRON	PRPF3	ENSG00000117360.13	ENST00000496202.5:ENST00000324862.7:ENST00000467329.5:ENST00000467514.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	77	2	2.53861	2.9943999999999997	3.45019	0.00202413	0.00152664	0.0416117	0.0353936
chr7	56080370	56080470	3319355	0	+	0.5	(0.476,0.515]	chr7	308593	6	UTR3	UTR3:EXON_MRNA	SUMF2	ENSG00000129103.19	ENST00000651354.1:ENST00000651586.1:ENST00000652303.1:ENST00000275607.13:ENST00000650735.1:ENST00000342190.11:ENST00000436782.5:ENST00000434526.8:ENST00000423763.5:ENST00000438133.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	24	469	2	2.95832	2.9943850000000003	3.03045	2.36025e-6	1.48587e-6	0.00107098	7.31117e-4
chr7	121169536	121169636	3395464	0	+	0.28	[0,0.28]	chr7	317781	195	INTRON	INTRON	CPED1	ENSG00000106034.18	ENST00000310396.10:ENST00000450913.6:ENST00000423795.5:ENST00000466055.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	150	2	2.92366	2.99435	3.06504	0.00175169	5.54251e-4	0.0376491	0.0214207
chr1	202378417	202378517	293056	0	+	0.41	(0.408,0.44]	chr1	33758	289	INTRON	INTRON	PPP1R12B	ENSG00000077157.22	ENST00000391959.5:ENST00000608999.6:ENST00000480184.5:ENST00000356764.6:ENST00000476364.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	65	2	2.9826	2.994275	3.00595	0.00781452	9.23082e-4	0.0759016	0.0278392
chr9	33992300	33992399	4245274	0	-	0.50505	(0.476,0.515]	chr9	390463	28	INTRON	INTRON	UBAP2	ENSG00000137073.24	ENST00000379238.7:ENST00000683659.1:ENST00000682239.1:ENST00000683140.1:ENST00000682209.1:ENST00000681980.1:ENST00000360802.6:ENST00000683252.1:ENST00000684158.1:ENST00000682914.1:ENST00000683717.1:ENST00000379239.9:ENST00000683084.1:ENST00000684754.1:ENST00000629575.2:ENST00000684298.1:ENST00000412543.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	36	2	1.74317	2.99409	4.24501	0.0396373	0.0247713	0.161534	0.12011
chr5	140510281	140510381	2503948	0	+	0.35	(0.32,0.35]	chr5	239292	1	SS5_PROX	SS5_PROX:INTRON	ANKHD1	ENSG00000131503.21	ENST00000297183.10:ENST00000360839.7:ENST00000421134.5:ENST00000246149.10:ENST00000412116.5:ENST00000431508.5	protein_coding	protein_coding	protein_coding	protein_coding	6	114	2	2.32039	2.9940300000000004	3.66767	0.00157464	8.30614e-4	0.036631	0.0266389
chr2	182994438	182994538	1285581	0	-	0.53	(0.515,0.57]	chr2	135395	2	SS5_PROX	SS5_PROX:INTRON	NCKAP1	ENSG00000061676.15	ENST00000361354.9:ENST00000360982.2	protein_coding	protein_coding	protein_coding	protein_coding	4	70	2	1.75372	2.9939850000000003	4.23425	0.0386904	1.40595e-5	0.14279	0.00279379
chr14	77609658	77609758	5928077	0	-	0.53	(0.515,0.57]	chr14	563737	119	INTRON	INTRON	SPTLC2	ENSG00000100596.8	ENST00000216484.7	protein_coding	protein_coding	protein_coding	protein_coding	3	55	2	2.68132	2.993985	3.30665	0.00324198	0.00213226	0.0524329	0.041756
chr7	151039572	151039671	3448017	0	+	0.434343	(0.408,0.44]	chr7	322012	20	EXON_MRNA	EXON_MRNA:INTRON	ABCB8	ENSG00000197150.13	ENST00000542328.5:ENST00000482309.5:ENST00000358849.9:ENST00000297504.10:ENST00000466514.5:ENST00000470645.5:ENST00000498578.5:ENST00000482899.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	78	2	2.23023	2.9938900000000004	3.75755	0.0087201	2.62433e-4	0.0788605	0.0143317
chr12	110397151	110397250	5409133	0	-	0.444444	(0.44,0.476]	chr12	516463	3	INTRON	INTRON	ANAPC7:ENSG00000258210	ENSG00000196510.14:ENSG00000258210.1	ENST00000455511.9:ENST00000450008.3:ENST00000552170.2:ENST00000550231.1:ENST00000464697.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay	5	103	2	2.64557	2.99383	3.34209	0.00158432	1.47653e-4	0.0363089	0.0105526
chr5	131692933	131693032	2719693	0	-	0.383838	(0.378,0.408]	chr5	255672	134	INTRON	INTRON	FNIP1	ENSG00000217128.13	ENST00000510461.6:ENST00000307954.12:ENST00000307968.11:ENST00000511848.1	protein_coding	protein_coding	protein_coding	protein_coding	10	204	2	2.51717	2.993765	3.47036	4.66153e-4	3.13246e-6	0.0199613	0.00114282
chr3	32742266	32742366	1393699	0	+	0.31	(0.28,0.32]	chr3	145926	44	INTRON	INTRON	CNOT10	ENSG00000182973.20	ENST00000331889.10:ENST00000328834.10:ENST00000435630.5:ENST00000454516.7:ENST00000416457.5:ENST00000430408.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	98	2	2.06157	2.9937500000000004	3.92593	0.0189458	1.77822e-4	0.108861	0.0116289
chr3	136193494	136193594	1824211	0	-	0.32	(0.28,0.32]	chr3	183518	404	INTRON	INTRON	MSL2	ENSG00000174579.4	ENST00000309993.3:ENST00000434835.2:ENST00000481989.1:ENST00000491050.1:ENST00000473093.1	protein_coding	protein_coding	protein_coding	protein_coding	5	111	2	2.17818	2.9937300000000002	3.8092800000000002	0.00555379	5.62738e-4	0.0675078	0.0219303
chr15	44305238	44305338	6013230	0	+	0.41	(0.408,0.44]	chr15	572826	155	INTRON	INTRON	GOLM2	ENSG00000166734.20	ENST00000299957.11:ENST00000559222.5:ENST00000557945.5:ENST00000650436.1:ENST00000429162.2:ENST00000345795.6:ENST00000558735.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	38	2	1.9831	2.993475	4.00385	0.0454568	0.018491	0.149888	0.116694
chrX	302963	303061	7605488	0	+	0.418367	(0.408,0.44]	chrX	779420	38	UTR3	UTR3:EXON_MRNA	PLCXD1	ENSG00000182378.15	ENST00000399012.6:ENST00000381657.8	protein_coding	protein_coding	protein_coding	protein_coding	6	119	2	2.26252	2.9934399999999997	3.72436	0.00399285	1.56427e-5	0.0550622	0.00298427
chr1	167308057	167308156	245727	0	+	0.464646	(0.44,0.476]	chr1	29279	41	INTRON	INTRON	POU2F1	ENSG00000143190.23	ENST00000559038.5:ENST00000367866.7:ENST00000557909.5:ENST00000271411.8:ENST00000429375.6:ENST00000560232.6:ENST00000442313.5:ENST00000367865.5:ENST00000492850.5:ENST00000541643.7:ENST00000648671.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	48	2	2.67572	2.99341	3.3111	0.0212064	0.0020006	0.113017	0.0412555
chr10	119591182	119591280	4705975	0	-	0.520408	(0.515,0.57]	chr10	434236	26	INTRON	INTRON	TIAL1	ENSG00000151923.18	ENST00000369093.6:ENST00000436547.7:ENST00000489822.5:ENST00000497671.5:ENST00000470781.5:ENST00000462373.1:ENST00000479729.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	29	2	1.9459	2.99338	4.04086	0.0429089	0.0197045	0.148082	0.120063
chr16	85601418	85601517	6415846	0	+	0.565657	(0.515,0.57]	chr16	615470	447	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	2	29	2	1.9459	2.99338	4.04086	0.0429089	0.0197045	0.148082	0.120063
chr19	10708198	10708282	7013703	0	+	0.535714	(0.515,0.57]	chr19	696883	2	INTRON	INTRON	QTRT1	ENSG00000213339.9	ENST00000589488.5:ENST00000250237.10:ENST00000421333.6:ENST00000590705.5:ENST00000585885.5:ENST00000587599.5:ENST00000591643.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	29	2	1.9459	2.99338	4.04086	0.0429089	0.0197045	0.148082	0.120063
chr5	149762112	149762211	2517371	0	+	0.525253	(0.515,0.57]	chr5	240653	1	INTRON	INTRON	PPARGC1B	ENSG00000155846.17	ENST00000360453.8:ENST00000394320.7:ENST00000461780.1:ENST00000309241.10	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	29	2	1.9459	2.99338	4.04086	0.0429089	0.0197045	0.148082	0.120063
chr1	112928094	112928193	523859	0	-	0.373737	(0.35,0.378]	chr1	61677	56	INTRON	INTRON	SLC16A1	ENSG00000155380.13	ENST00000679803.1:ENST00000369626.8:ENST00000443580.6:ENST00000538576.5:ENST00000429288.2:ENST00000458229.6:ENST00000679846.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	72	2	2.83709	2.99328	3.14947	0.01435	4.50721e-4	0.0966737	0.0192381
chr11	110256674	110256772	5040923	0	-	0.336735	(0.32,0.35]	chr11	474700	9	INTRON	INTRON	RDX	ENSG00000137710.17	ENST00000645527.1:ENST00000530749.5:ENST00000528498.5:ENST00000528900.5:ENST00000530301.5:ENST00000647231.1:ENST00000646663.1:ENST00000645495.2:ENST00000544551.5:ENST00000530131.5:ENST00000529774.1:ENST00000534683.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	75	2	2.99125	2.9931	2.99495	0.00958447	0.00102621	0.0820838	0.0294094
chr5	104291375	104291475	2443329	0	+	0.38	(0.378,0.408]	chr5	234410	1861	INTRON	INTRON	LINC02163	ENSG00000251026.2	ENST00000662211.1:ENST00000666145.1	lncRNA	lncRNA	lncRNA	lncRNA	4	89	2	2.86464	2.9930700000000003	3.1215	0.00215581	4.84777e-4	0.0417866	0.0199443
chr1	1477850	1477937	1626	0	+	0.54023	(0.515,0.57]	chr1	370	1	INTRON	INTRON	ATAD3B	ENSG00000160072.20	ENST00000673477.1:ENST00000308647.8	protein_coding	protein_coding	protein_coding	protein_coding	20	331	2	2.24134	2.993035	3.74473	1.24308e-4	2.84204e-8	0.00952291	5.94132e-5
chr3	47757260	47757360	1684830	0	-	0.33	(0.32,0.35]	chr3	172116	109	INTRON	INTRON	SMARCC1	ENSG00000173473.11	ENST00000254480.10:ENST00000425518.5:ENST00000454240.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	76	2	2.89743	2.993035	3.08864	0.0127608	6.64579e-4	0.0926667	0.0233423
chr2	182977451	182977549	1285405	0	-	0.377551	(0.35,0.378]	chr2	135360	1	INTRON	INTRON	NCKAP1	ENSG00000061676.15	ENST00000361354.9:ENST00000360982.2	protein_coding	protein_coding	protein_coding	protein_coding	5	48	2	1.34146	2.9930149999999998	4.64457	0.0634598	0.012652	0.19806000000000001	0.0926667
chr1	11801916	11802008	378905	0	-	0.326087	(0.32,0.35]	chr1	44480	1	INTRON	INTRON	MTHFR	ENSG00000177000.13	ENST00000376590.9:ENST00000376592.6:ENST00000376583.7:ENST00000376585.6:ENST00000641747.1:ENST00000641805.1:ENST00000641446.1:ENST00000423400.7:ENST00000641407.1:ENST00000641759.1:ENST00000641721.1:ENST00000376486.3:ENST00000641909.1:ENST00000641437.1:ENST00000418034.1:ENST00000431243.6:ENST00000642002.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	74	2	2.67068	2.993005	3.31533	0.00406276	0.00323121	0.0578984	0.0507087
chr17	22099301	22099401	6578656	0	+	0.37	(0.35,0.378]	chr17	639556	80	INTRON	INTRON	UBBP4	ENSG00000263563.7	ENST00000648259.1:ENST00000688301.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	15	307	2	2.87562	2.993005	3.11039	3.67288e-5	6.09578e-6	0.00515117	0.00173029
chr2	61392566	61392665	1129765	0	-	0.464646	(0.44,0.476]	chr2	121474	89	INTRON	INTRON	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000453133.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	99	2	1.66633	2.9928950000000003	4.31946	0.0243614	1.16666e-5	0.12011	0.00252017
chr15	90992709	90992808	6259646	0	-	0.313131	(0.28,0.32]	chr15	597349	63	INTRON	INTRON	PRC1:ENSG00000284946	ENSG00000198901.14:ENSG00000284946.1	ENST00000394249.8:ENST00000361188.9:ENST00000643536.1:ENST00000442656.6:ENST00000647331.1:ENST00000553494.5:ENST00000557763.5:ENST00000417173.6:ENST00000560605.1:ENST00000557905.5:ENST00000555791.5:ENST00000555745.5:ENST00000559811.1:ENST00000556129.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	81	2	2.36963	2.9928150000000002	3.616	0.0157022	7.42427e-4	0.101453	0.024913
chr7	6271473	6271573	3477373	0	-	0.42	(0.408,0.44]	chr7	325332	589	INTRON	INTRON	CYTH3	ENSG00000008256.16	ENST00000396741.3:ENST00000350796.8:ENST00000482460.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	48	2	2.78122	2.992795	3.20437	0.015812	0.00306596	0.101453	0.0509893
chr5	54011010	54011110	2617914	0	-	0.42	(0.408,0.44]	chr5	248835	990	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	115	2	1.82508	2.992755	4.16043	0.0063277	5.66588e-5	0.0722266	0.00655354
chr1	206593218	206593318	624660	0	-	0.43	(0.408,0.44]	chr1	74360	2	SS5_PROX	SS5_PROX:INTRON	EIF2D	ENSG00000143486.16	ENST00000472709.6:ENST00000271764.7:ENST00000367114.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	48	2	2.89795	2.9926649999999997	3.08738	0.0110735	0.00478231	0.0873897	0.0636201
chr20	58662621	58662720	7290287	0	+	0.424242	(0.408,0.44]	chr20	741715	26	INTRON	INTRON	STX16	ENSG00000124222.22	ENST00000361830.7:ENST00000355957.9:ENST00000458280.5:ENST00000312283.12:ENST00000412911.5:ENST00000371141.8:ENST00000359617.8:ENST00000460655.5:ENST00000476384.5:ENST00000483434.5:ENST00000496117.5:ENST00000490700.5:ENST00000371132.8:ENST00000496003.5:ENST00000467096.5:ENST00000358029.8:ENST00000464640.5:ENST00000493301.5:ENST00000468590.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	48	2	2.89795	2.9926649999999997	3.08738	0.0110735	0.00478231	0.0873897	0.0636201
chr3	172177248	172177348	1560927	0	+	0.43	(0.408,0.44]	chr3	161551	283	INTRON	INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000421757.5:ENST00000469491.5:ENST00000336824.8:ENST00000423424.5:ENST00000416957.5:ENST00000478016.1:ENST00000443501.1:ENST00000476794.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	48	2	2.89795	2.9926649999999997	3.08738	0.0110735	0.00478231	0.0873897	0.0636201
chr6	4024863	4024963	2789733	0	+	0.44	(0.408,0.44]	chr6	263481	30	INTRON	INTRON	PRPF4B	ENSG00000112739.17	ENST00000480058.5:ENST00000337659.11	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	48	2	2.89795	2.9926649999999997	3.08738	0.0110735	0.00478231	0.0873897	0.0636201
chr1	167957648	167957748	248699	0	+	0.36	(0.35,0.378]	chr1	29542	54	INTRON	INTRON	DCAF6	ENSG00000143164.16	ENST00000450548.5:ENST00000470919.5:ENST00000432587.6:ENST00000367843.7:ENST00000470721.5:ENST00000367840.4:ENST00000312263.10:ENST00000455334.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	84	2	2.69	2.9926500000000003	3.2953	0.0031465	0.00107271	0.0500431	0.0300133
chr15	22520186	22520286	5974770	0	+	0.34	(0.32,0.35]	chr15	568084	28	INTRON	INTRON	HERC2P2	ENSG00000276550.5	ENST00000613386.4:ENST00000619021.4	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	2	32	2	1.81328	2.992545	4.17181	0.0615716	0.04531	0.193423	0.149888
chr20	6016252	6016351	7230651	0	+	0.323232	(0.32,0.35]	chr20	734840	3	INTRON	INTRON	CRLS1	ENSG00000088766.12	ENST00000452938.5:ENST00000378863.9:ENST00000378868.4:ENST00000489345.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	32	2	1.81328	2.992545	4.17181	0.0615716	0.04531	0.193423	0.149888
chr2	55385678	55385778	1124049	0	-	0.53	(0.515,0.57]	chr2	120560	104	INTRON	INTRON	CCDC88A	ENSG00000115355.18	ENST00000263630.13:ENST00000436346.7:ENST00000336838.10:ENST00000642200.1:ENST00000413716.7:ENST00000643413.1:ENST00000647401.1:ENST00000645311.1:ENST00000646796.1:ENST00000645571.1:ENST00000645477.1:ENST00000645072.1:ENST00000644890.1:ENST00000644630.1:ENST00000647098.1:ENST00000646324.1:ENST00000642890.1:ENST00000647517.1:ENST00000645031.1:ENST00000645484.1:ENST00000645529.1:ENST00000644033.1:ENST00000644193.1:ENST00000645168.1:ENST00000647341.1:ENST00000430086.1:ENST00000644127.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	72	2	1.63184	2.9923900000000003	4.35294	0.0545832	6.60583e-6	0.165292	0.00181159
chr1	109216540	109216639	179618	0	+	0.333333	(0.32,0.35]	chr1	19612	15	INTRON	INTRON	SARS1	ENSG00000031698.13	ENST00000234677.7:ENST00000477544.5:ENST00000369923.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	154	2	2.0575	2.99229	3.92708	0.00144543	2.71709e-4	0.0348657	0.0151189
chr16	89407155	89407255	6542760	0	-	0.45	(0.44,0.476]	chr16	634254	30	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000647238.1:ENST00000644045.1:ENST00000643147.1:ENST00000644139.1:ENST00000568512.6:ENST00000566973.1:ENST00000562211.2:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	158	2	2.30689	2.992175	3.67746	0.00187835	2.82837e-6	0.039073	0.001075
chr21	37198325	37198425	7406142	0	+	0.35	(0.32,0.35]	chr21	754819	3	SS5_PROX	SS5_PROX:INTRON	TTC3	ENSG00000182670.14	ENST00000492275.6:ENST00000418766.6:ENST00000450533.6:ENST00000696812.1:ENST00000696811.1:ENST00000463216.6:ENST00000411496.2:ENST00000399017.6:ENST00000354749.6:ENST00000479930.5:ENST00000476784.5:ENST00000428693.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	57	2	2.4458	2.9921699999999998	3.53854	0.0425977	9.09596e-4	0.148082	0.0277043
chr1	31053315	31053414	412772	0	-	0.343434	(0.32,0.35]	chr1	49733	241	INTRON	INTRON	PUM1	ENSG00000134644.16	ENST00000426105.7:ENST00000373747.7:ENST00000257075.9:ENST00000424085.6:ENST00000525843.5:ENST00000440538.6:ENST00000373741.8:ENST00000373742.6:ENST00000526215.5:ENST00000525948.5:ENST00000480602.1:ENST00000524516.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	39	2	1.61669	2.99212	4.36755	0.0578816	0.0300552	0.188651	0.129138
chr13	95184322	95184421	5638695	0	-	0.323232	(0.32,0.35]	chr13	537109	59	INTRON	INTRON	ABCC4	ENSG00000125257.16	ENST00000645237.2:ENST00000643051.1:ENST00000643842.1:ENST00000646439.1:ENST00000643816.1:ENST00000536256.3:ENST00000643556.1:ENST00000629385.1:ENST00000642524.1:ENST00000645532.1:ENST00000644471.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	39	2	1.61669	2.99212	4.36755	0.0578816	0.0300552	0.188651	0.129138
chr4	70954294	70954394	1971027	0	+	0.35	(0.32,0.35]	chr4	197584	31	INTRON	INTRON	MOB1B	ENSG00000173542.9	ENST00000502869.5:ENST00000509041.5:ENST00000309395.7:ENST00000396051.2:ENST00000511449.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	39	2	1.61669	2.99212	4.36755	0.0578816	0.0300552	0.188651	0.129138
chr1	32661050	32661149	65929	0	+	0.40404	(0.378,0.408]	chr1	8422	31	INTRON	INTRON	RBBP4	ENSG00000162521.19	ENST00000414241.7:ENST00000527118.5:ENST00000373493.10:ENST00000401893.7:ENST00000524393.5:ENST00000492348.6:ENST00000526193.5:ENST00000373485.5:ENST00000477563.6:ENST00000458695.6:ENST00000445722.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	67	2	2.26009	2.9920299999999997	3.72397	0.0188651	3.23378e-4	0.108861	0.0159645
chr6	157661825	157661925	3014365	0	+	0.52	(0.515,0.57]	chr6	281317	78	INTRON	INTRON	ZDHHC14	ENSG00000175048.17	ENST00000414563.6:ENST00000359775.10:ENST00000518214.5:ENST00000341375.12:ENST00000523706.5:ENST00000517432.5:ENST00000422910.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	30	2	2.08547	2.992015	3.89856	0.0289426	0.0280943	0.137011	0.1274
chr4	44699169	44699267	1956997	0	+	0.397959	(0.378,0.408]	chr4	196109	6	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	GUF1	ENSG00000151806.14	ENST00000281543.6:ENST00000506793.5:ENST00000511493.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	140	2	2.53813	2.99182	3.44551	6.83968e-4	8.68398e-5	0.0239468	0.00783027
chr1	212806341	212806441	309725	0	+	0.39	(0.378,0.408]	chr1	35758	13	INTRON	INTRON	TATDN3	ENSG00000203705.11	ENST00000532324.5:ENST00000526641.5:ENST00000366973.8:ENST00000531963.5:ENST00000366974.9:ENST00000526997.5:ENST00000533650.5:ENST00000525574.5:ENST00000525569.5:ENST00000527693.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	67	2	2.55607	2.991785	3.4275	0.00704647	0.00126053	0.0718189	0.03295
chr1	8762929	8763029	373237	0	-	0.38	(0.378,0.408]	chr1	43549	92	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000656437.1:ENST00000659924.1	protein_coding	protein_coding	protein_coding	protein_coding	3	66	2	2.74646	2.99177	3.23708	0.00365053	0.00271684	0.0535094	0.0481064
chr9	100082719	100082819	4308485	0	-	0.39	(0.378,0.408]	chr9	395811	222	INTRON	INTRON	ERP44	ENSG00000023318.9	ENST00000262455.7:ENST00000685319.1:ENST00000691188.1:ENST00000687025.1:ENST00000687093.1:ENST00000690739.1:ENST00000687017.1:ENST00000690317.1:ENST00000691823.1:ENST00000686275.1:ENST00000689406.1:ENST00000684842.1:ENST00000688230.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	66	2	2.74646	2.99177	3.23708	0.00365053	0.00271684	0.0535094	0.0481064
chr7	64826642	64826742	3320672	0	+	0.43	(0.408,0.44]	chr7	308722	106	INTRON	INTRON	ZNF138	ENSG00000197008.10	ENST00000359735.7:ENST00000440155.6:ENST00000494380.5:ENST00000307355.12:ENST00000437743.1:ENST00000440598.2:ENST00000430838.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	64	2	2.69457	2.9915450000000003	3.28852	0.00331036	0.00287185	0.0527031	0.0474836
chr6	170582646	170582741	3267763	0	-	0.452632	(0.44,0.476]	chr6	303412	5	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PDCD2	ENSG00000071994.11	ENST00000541970.6:ENST00000167218.9:ENST00000392090.6:ENST00000545869.5:ENST00000542896.5:ENST00000544866.5:ENST00000539212.5:ENST00000538195.1:ENST00000453163.6:ENST00000537445.5:ENST00000544336.5:ENST00000614056.4:ENST00000443345.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	64	2	2.9044	2.99151	3.07862	0.0060153	0.00132926	0.0674604	0.0335085
chr15	40193546	40193646	6001578	0	+	0.5	(0.476,0.515]	chr15	570623	61	INTRON	INTRON	BUB1B	ENSG00000156970.13	ENST00000412359.7:ENST00000287598.11:ENST00000559733.5:ENST00000557848.1:ENST00000559772.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	64	2	2.31726	2.991455	3.66565	0.015077	4.18031e-4	0.0994339	0.0182827
chr15	87597388	87597488	6255528	0	-	0.37	(0.35,0.378]	chr15	596826	540	INTRON	INTRON	ENSG00000259560	ENSG00000259560.2	ENST00000665121.1:ENST00000560439.1	lncRNA	lncRNA	lncRNA	lncRNA	2	52	2	2.66547	2.991415	3.31736	0.0233639	0.00211072	0.118323	0.0425419
chr11	63683276	63683376	4799931	0	+	0.4	(0.378,0.408]	chr11	444936	11	INTRON	INTRON	RTN3	ENSG00000133318.14	ENST00000341307.6:ENST00000356000.7:ENST00000542238.5:ENST00000538995.1:ENST00000339997.8:ENST00000540798.5:ENST00000537981.5:ENST00000377819.10:ENST00000536011.5:ENST00000543123.1:ENST00000543552.5:ENST00000545432.5:ENST00000338850.5:ENST00000354497.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	50	2	2.60296	2.99133	3.3797	0.0267851	0.00154501	0.123349	0.0362716
chr9	111422799	111422899	4314666	0	-	0.38	(0.378,0.408]	chr9	396775	2	SS5_PROX	SS5_PROX:INTRON	ECPAS	ENSG00000136813.15	ENST00000684092.1:ENST00000338205.9:ENST00000259335.8:ENST00000602447.5	protein_coding	protein_coding	protein_coding	protein_coding	2	50	2	2.60296	2.99133	3.3797	0.0267851	0.00154501	0.123349	0.0362716
chr16	70283382	70283481	6510436	0	-	0.383838	(0.378,0.408]	chr16	630613	2	INTRON	INTRON	AARS1	ENSG00000090861.17	ENST00000674963.1:ENST00000675643.1:ENST00000674691.1:ENST00000261772.13:ENST00000675569.1:ENST00000676209.1:ENST00000676211.1:ENST00000676040.1:ENST00000675953.1:ENST00000675691.1:ENST00000676004.1:ENST00000675403.1:ENST00000676212.1:ENST00000675045.1:ENST00000675035.1:ENST00000676168.1:ENST00000674652.1:ENST00000675133.1:ENST00000675120.1:ENST00000674811.1:ENST00000674512.1:ENST00000675853.1:ENST00000565361.3:ENST00000676247.1:ENST00000674848.1:ENST00000674962.1:ENST00000675371.1:ENST00000675986.1:ENST00000674768.1:ENST00000675297.1:ENST00000675751.1:ENST00000564359.6:ENST00000675338.1:ENST00000675155.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	66	2	2.78867	2.991175	3.19368	0.00426861	0.00226991	0.0573912	0.0437013
chr15	82398578	82398677	6075968	0	+	0.353535	(0.35,0.378]	chr15	578731	63	INTRON	INTRON	UBE2Q2P2	ENSG00000259429.5	ENST00000618775.4:ENST00000613592.4	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	7	152	2	2.88445	2.991085	3.09772	0.00212567	1.69768e-5	0.041756	0.00312938
chr11	68511641	68511741	4817843	0	+	0.51	(0.476,0.515]	chr11	448913	60	INTRON	INTRON	PPP6R3	ENSG00000110075.15	ENST00000530427.5:ENST00000528635.5:ENST00000529907.5:ENST00000533127.5:ENST00000534534.5:ENST00000529344.5:ENST00000524845.5:ENST00000393800.7:ENST00000265637.8:ENST00000524904.5:ENST00000393801.7:ENST00000265636.9:ENST00000529710.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	140	2	2.89945	2.991065	3.08268	1.82084e-4	1.1863e-4	0.0122264	0.00930884
chr10	103397523	103397621	4516208	0	+	0.571429	(0.57,1]	chr10	416346	4	INTRON	INTRON	PDCD11	ENSG00000148843.15	ENST00000369797.8:ENST00000649849.1:ENST00000493610.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	27	2	2.79889	2.990945	3.183	0.0110274	0.00254356	0.0927187	0.0448135
chr2	206160890	206160970	990840	0	+	0.575	(0.57,1]	chr2	106410	1	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	EEF1B2	ENSG00000114942.14	ENST00000236957.9:ENST00000392221.5:ENST00000445505.5:ENST00000479587.1:ENST00000429769.5:ENST00000460760.1:ENST00000392222.7:ENST00000415904.1:ENST00000455150.1:ENST00000435123.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	27	2	2.79889	2.990945	3.183	0.0110274	0.00254356	0.0927187	0.0448135
chr21	43908901	43909000	7414229	0	+	0.646465	(0.57,1]	chr21	755698	45	INTRON	INTRON	AGPAT3	ENSG00000160216.21	ENST00000291572.13:ENST00000448287.5:ENST00000398061.5:ENST00000327505.6	protein_coding	protein_coding	protein_coding	protein_coding	2	27	2	2.79889	2.990945	3.183	0.0110274	0.00254356	0.0927187	0.0448135
chr5	868406	868506	2564362	0	-	0.63	(0.57,1]	chr5	245441	4	SS5_PROX	SS5_PROX:INTRON	BRD9	ENSG00000028310.18	ENST00000493082.5:ENST00000467963.6:ENST00000495265.5:ENST00000490814.6:ENST00000495794.5:ENST00000483234.5:ENST00000489816.5:ENST00000483173.5:ENST00000519112.5:ENST00000518250.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	27	2	2.79889	2.990945	3.183	0.0110274	0.00254356	0.0927187	0.0448135
chr1	212869454	212869553	309952	0	+	0.252525	[0,0.28]	chr1	35794	46	INTRON	INTRON	FLVCR1	ENSG00000162769.13	ENST00000366971.9:ENST00000419102.1:ENST00000579295.1:ENST00000474693.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	92	2	2.93306	2.990865	3.04867	0.0104221	0.00180892	0.085482	0.039365700000000003
chr16	81448436	81448536	6405033	0	+	0.62	(0.57,1]	chr16	615026	25	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8	protein_coding	protein_coding	protein_coding	protein_coding	3	35	2	2.66305	2.9908200000000003	3.31859	0.00327879	0.00137292	0.0509077	0.0340241
chr2	113239428	113239528	853086	0	+	0.52	(0.515,0.57]	chr2	95731	20	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	PAX8-AS1	ENSG00000189223.15	ENST00000456685.5:ENST00000556070.6:ENST00000623306.3:ENST00000451179.6:ENST00000653055.1:ENST00000437551.6:ENST00000665814.1:ENST00000669027.1:ENST00000617509.4:ENST00000616073.5:ENST00000422956.6:ENST00000661674.1:ENST00000617278.2:ENST00000654203.1:ENST00000663248.1:ENST00000333145.9:ENST00000665717.1:ENST00000624706.3:ENST00000445745.6:ENST00000436293.6:ENST00000661255.1:ENST00000555766.1:ENST00000613966.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	3	36	2	1.811	2.990685	4.17037	0.0325989	0.0139194	0.133687	0.10247
chr1	110344741	110344840	182398	0	+	0.262626	[0,0.28]	chr1	20236	21	INTRON	INTRON	RBM15	ENSG00000162775.17	ENST00000652747.1:ENST00000618772.4:ENST00000487146.8:ENST00000369784.9:ENST00000650953.2:ENST00000654015.1:ENST00000617047.1	protein_coding	protein_coding	protein_coding	protein_coding	3	92	2	2.56073	2.990665	3.4206	0.00743095	0.00322364	0.0772645	0.0507087
chr17	51186701	51186801	6797115	0	-	0.48	(0.476,0.515]	chr17	671037	4	INTRON	INTRON	MBTD1	ENSG00000011258.16	ENST00000586178.6:ENST00000415868.5	protein_coding	protein_coding	protein_coding	protein_coding	7	130	2	2.2492	2.99065	3.7321	0.00238578	1.52889e-5	0.0439909	0.00293847
chr9	36444758	36444858	4250291	0	-	0.4	(0.378,0.408]	chr9	391466	197	INTRON	INTRON	RNF38	ENSG00000137075.18	ENST00000488058.1	protein_coding	processed_transcript	protein_coding	processed_transcript	2	34	2	1.88729	2.99054	4.09379	0.0532327	0.023912	0.162538	0.129075
chr3	143005146	143005245	1529108	0	+	0.353535	(0.35,0.378]	chr3	159324	24	INTRON	INTRON	U2SURP	ENSG00000163714.18	ENST00000600150.5:ENST00000488497.7:ENST00000493782.5:ENST00000473835.7:ENST00000461591.5:ENST00000493598.6:ENST00000463563.6:ENST00000470400.5:ENST00000465175.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	56	2	1.49914	2.99049	4.48184	0.0306686	0.0191702	0.143385	0.108861
chr19	21740379	21740479	7159026	0	-	0.33	(0.32,0.35]	chr19	723706	120	INTRON	INTRON	ZNF100	ENSG00000197020.12	ENST00000358296.11:ENST00000305570.10:ENST00000594401.1	protein_coding	protein_coding	protein_coding	protein_coding	2	55	2	2.84812	2.9904450000000002	3.13277	0.0147575	0.00458313	0.0983813	0.0622676
chr1	114750507	114750607	528561	0	-	0.37	(0.35,0.378]	chr1	62354	3	SS3_PROX	SS3_PROX:INTRON	CSDE1	ENSG00000009307.17	ENST00000339438.10:ENST00000610726.5:ENST00000692719.1:ENST00000358528.9:ENST00000688211.1:ENST00000438362.7:ENST00000689217.1:ENST00000689989.1:ENST00000686025.1:ENST00000686781.1:ENST00000686123.1:ENST00000684913.1:ENST00000686235.1:ENST00000693467.1:ENST00000689732.1:ENST00000693644.1:ENST00000687759.1:ENST00000692044.1:ENST00000689885.1:ENST00000691403.1:ENST00000692629.1:ENST00000690013.1:ENST00000690420.1:ENST00000692950.1:ENST00000686667.1:ENST00000691032.1:ENST00000685676.1:ENST00000529046.6:ENST00000692672.1:ENST00000691377.1:ENST00000688611.1:ENST00000690207.1:ENST00000693311.1:ENST00000689510.1:ENST00000686581.1:ENST00000689727.1:ENST00000690784.1:ENST00000483030.2:ENST00000687548.1:ENST00000261443.9:ENST00000530886.5:ENST00000369530.5:ENST00000534699.5:ENST00000524652.2:ENST00000525132.1:ENST00000525878.5:ENST00000525970.5:ENST00000533818.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	129	2	2.90638	2.99038	3.07438	9.54868e-4	1.28984e-4	0.0282401	0.00979119
chrX	154788078	154788176	7915429	0	-	0.285714	(0.28,0.32]	chrX	806147	13	INTRON	INTRON	MPP1	ENSG00000130830.15	ENST00000369534.8:ENST00000413259.7:ENST00000439370.5:ENST00000393531.5:ENST00000453245.5:ENST00000494170.1:ENST00000462825.5:ENST00000393529.5:ENST00000475943.5:ENST00000428488.1:ENST00000488754.5:ENST00000417435.5:ENST00000488694.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	24	546	2	2.6029	2.99029	3.37768	1.86424e-5	5.72483e-6	0.00329969	0.00177762
chr8	90386666	90386766	3793962	0	+	0.45	(0.44,0.476]	chr8	351792	346	INTRON	INTRON	LINC00534	ENSG00000253394.7	ENST00000662145.1:ENST00000655523.1:ENST00000517400.6:ENST00000658299.1:ENST00000663329.1:ENST00000658342.1:ENST00000523283.6:ENST00000655219.1:ENST00000662692.1:ENST00000667296.1:ENST00000667565.1:ENST00000523406.2:ENST00000659030.1:ENST00000653734.1:ENST00000654785.1:ENST00000524361.5:ENST00000668745.1:ENST00000661519.1:ENST00000671657.1:ENST00000655123.1:ENST00000663098.1:ENST00000670903.1:ENST00000654946.1	lncRNA	lncRNA	lncRNA	lncRNA	4	78	2	2.38636	2.990265	3.59417	0.0047296	5.78231e-4	0.0600445	0.0218253
chr3	113744443	113744543	1772362	0	-	0.34	(0.32,0.35]	chr3	179465	33	INTRON	INTRON	NAA50	ENSG00000121579.14	ENST00000240922.8:ENST00000477813.5:ENST00000497525.5:ENST00000497255.1:ENST00000481432.5:ENST00000493900.5:ENST00000478020.1:ENST00000467022.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	167	2	2.80662	2.9901850000000003	3.17375	4.52142e-4	9.64618e-5	0.0196769	0.00826486
chr7	149586603	149586703	3672242	0	-	0.6	(0.57,1]	chr7	340834	226	INTRON	INTRON	ZNF767P	ENSG00000133624.14	ENST00000463567.5:ENST00000472212.5:ENST00000684939.1:ENST00000690388.1:ENST00000486492.5:ENST00000481762.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	7	74	2	2.69093	2.990185	3.28944	2.65452e-4	1.84953e-5	0.0144243	0.00349761
chr7	75477863	75477962	3558848	0	-	0.282828	(0.28,0.32]	chr7	331555	23	INTRON	INTRON	POM121C:ENSG00000242073	ENSG00000272391.6:ENSG00000242073.2	ENST00000615331.5:ENST00000398379.2:ENST00000415277.2	protein_coding	protein_coding	protein_coding:transcribed_unprocessed_pseudogene	protein_coding:transcribed_unprocessed_pseudogene	4	97	2	2.64424	2.9901	3.33596	0.00342993	0.00159565	0.0517761	0.0367961
chr1	213000476	213000570	634936	0	-	0.329787	(0.32,0.35]	chr1	75004	2	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ANGEL2	ENSG00000174606.14	ENST00000366962.8:ENST00000360506.6:ENST00000535388.2:ENST00000473303.1:ENST00000498650.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	100	2	2.92204	2.9900599999999997	3.05808	0.00202818	7.67153e-4	0.04086	0.0254532
chr10	73061865	73061965	4647491	0	-	0.54	(0.515,0.57]	chr10	427530	79	INTRON	INTRON	P4HA1	ENSG00000122884.13	ENST00000394890.7:ENST00000307116.6:ENST00000373008.6:ENST00000440381.5:ENST00000263556.3	protein_coding	protein_coding	protein_coding	protein_coding	12	191	2	2.38058	2.9900200000000003	3.59946	2.74144e-4	7.16703e-7	0.0151711	4.72409e-4
chr1	28372024	28372124	55856	0	+	0.45	(0.44,0.476]	chr1	7266	18	INTRON	INTRON	PHACTR4	ENSG00000204138.13	ENST00000633371.1:ENST00000632202.1:ENST00000632421.1:ENST00000463428.5:ENST00000373839.8:ENST00000493669.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	29	2	1.85146	2.989945	4.12843	0.0545846	0.0337192	0.182529	0.134145
chr11	70343368	70343468	4821162	0	+	0.46	(0.44,0.476]	chr11	449479	3	SS3_PROX	SS3_PROX:INTRON	PPFIA1	ENSG00000131626.19	ENST00000253925.12:ENST00000389547.7:ENST00000532504.5:ENST00000648755.1:ENST00000644155.1:ENST00000526262.5:ENST00000530798.5:ENST00000526369.3:ENST00000526347.5:ENST00000530294.5:ENST00000526074.5:ENST00000528284.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	29	2	1.85146	2.989945	4.12843	0.0545846	0.0337192	0.182529	0.134145
chr3	9924890	9924989	1361721	0	+	0.464646	(0.44,0.476]	chr3	143284	2	INTRON	INTRON	IL17RC	ENSG00000163702.21	ENST00000383812.9:ENST00000416074.6:ENST00000483582.5:ENST00000403601.8:ENST00000295981.7:ENST00000451231.5:ENST00000498214.6:ENST00000438091.6:ENST00000466046.5:ENST00000469686.6:ENST00000412901.6:ENST00000434756.5:ENST00000696815.1:ENST00000494365.5:ENST00000696816.1:ENST00000696823.1:ENST00000696824.1:ENST00000696825.1:ENST00000696826.1:ENST00000696827.1:ENST00000696828.1:ENST00000451165.7:ENST00000696822.1:ENST00000696818.1:ENST00000696819.1:ENST00000696820.1:ENST00000696821.1:ENST00000696817.1:ENST00000696829.1:ENST00000436503.6:ENST00000451271.5:ENST00000696830.1:ENST00000455057.5:ENST00000696832.1:ENST00000413608.2:ENST00000464406.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	29	2	1.85146	2.989945	4.12843	0.0545846	0.0337192	0.182529	0.134145
chr6	89802628	89802727	3161867	0	-	0.444444	(0.44,0.476]	chr6	294880	75	INTRON	INTRON	MDN1	ENSG00000112159.12	ENST00000369393.8:ENST00000629399.2:ENST00000439638.1	protein_coding	protein_coding	protein_coding	protein_coding	2	29	2	1.85146	2.989945	4.12843	0.0545846	0.0337192	0.182529	0.134145
chr7	105153532	105153631	3601537	0	-	0.464646	(0.44,0.476]	chr7	336102	65	INTRON	INTRON	SRPK2	ENSG00000135250.17	ENST00000393651.8:ENST00000357311.7:ENST00000485455.1:ENST00000489828.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	29	2	1.85146	2.989945	4.12843	0.0545846	0.0337192	0.182529	0.134145
chr11	68090672	68090771	4972288	0	-	0.313131	(0.28,0.32]	chr11	469432	9	INTRON	INTRON	CHKA	ENSG00000110721.12	ENST00000265689.9:ENST00000356135.9:ENST00000531341.1	protein_coding	protein_coding	protein_coding	protein_coding	2	34	2	1.83771	2.9899250000000004	4.14214	0.0591725	0.0579756	0.189982	0.167723
chr12	111970450	111970550	5414133	0	-	0.29	(0.28,0.32]	chr12	517076	43	INTRON	INTRON	TMEM116	ENSG00000198270.13	ENST00000550831.7:ENST00000552374.7:ENST00000355445.7:ENST00000547878.6:ENST00000549537.6:ENST00000552801.6:ENST00000548283.6:ENST00000550800.6:ENST00000550037.5:ENST00000551297.6:ENST00000550020.6:ENST00000546537.6:ENST00000549425.5:ENST00000552839.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	34	2	1.83771	2.9899250000000004	4.14214	0.0591725	0.0579756	0.189982	0.167723
chr15	50623765	50623865	6172642	0	-	0.29	(0.28,0.32]	chr15	588331	2	SS5_PROX	SS5_PROX:INTRON	TRPM7	ENSG00000092439.16	ENST00000646667.1:ENST00000560955.5:ENST00000560638.1	protein_coding	protein_coding	protein_coding	protein_coding	2	34	2	1.83771	2.9899250000000004	4.14214	0.0591725	0.0579756	0.189982	0.167723
chr6	42585266	42585365	2865270	0	+	0.313131	(0.28,0.32]	chr6	271020	109	INTRON	INTRON	UBR2	ENSG00000024048.11	ENST00000372899.6:ENST00000372901.2:ENST00000372903.6	protein_coding	protein_coding	protein_coding	protein_coding	2	34	2	1.83771	2.9899250000000004	4.14214	0.0591725	0.0579756	0.189982	0.167723
chr6	112077700	112077800	3195218	0	-	0.31	(0.28,0.32]	chr6	297629	13	EXON_MRNA	EXON_MRNA:INTRON	TUBE1	ENSG00000074935.14	ENST00000368662.10:ENST00000604814.5:ENST00000605457.5:ENST00000604743.5:ENST00000604689.1:ENST00000441191.5:ENST00000604967.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	34	2	1.83771	2.9899250000000004	4.14214	0.0591725	0.0579756	0.189982	0.167723
chr7	72993758	72993858	3554054	0	-	0.42	(0.408,0.44]	chr7	330646	104	INTRON	INTRON	STAG3L3	ENSG00000174353.17	ENST00000436857.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	10	132	2	1.45004	2.9898100000000003	4.52958	0.020059	7.38293e-6	0.121028	0.00205092
chr1	21748965	21749062	396517	0	-	0.247423	[0,0.28]	chr1	47316	3	INTRON	INTRON	USP48	ENSG00000090686.16	ENST00000400301.5:ENST00000308271.14:ENST00000529637.5:ENST00000421625.6	protein_coding	protein_coding	protein_coding	protein_coding	3	95	2	2.81922	2.9897650000000002	3.16031	0.0197411	6.84313e-4	0.109608	0.0238224
chr6	36471835	36471934	2854208	0	+	0.50505	(0.476,0.515]	chr6	269726	12	INTRON	INTRON	KCTD20	ENSG00000112078.14	ENST00000536244.5:ENST00000373731.7:ENST00000483557.5:ENST00000474988.5:ENST00000498267.5:ENST00000481911.5:ENST00000449081.6:ENST00000265344.8:ENST00000460983.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	107	2	1.83634	2.989765	4.14319	0.00949158	3.39012e-5	0.0817766	0.0046443
chr15	92930383	92930482	6103998	0	+	0.434343	(0.408,0.44]	chr15	581428	9	INTRON	INTRON	ENSG00000279765:CHD2	ENSG00000279765.3:ENSG00000173575.22	ENST00000630790.1:ENST00000626874.2:ENST00000394196.9:ENST00000635856.1:ENST00000420239.7:ENST00000628375.2:ENST00000625990.3:ENST00000626782.2:ENST00000629136.1:ENST00000637572.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	77	2	2.60785	2.989735	3.37162	0.00208674	0.00146754	0.0411801	0.035104
chr5	39072910	39073010	2605633	0	-	0.31	(0.28,0.32]	chr5	247896	514	INTRON	INTRON	RICTOR	ENSG00000164327.13	ENST00000357387.8:ENST00000511516.5:ENST00000296782.9:ENST00000510711.5:ENST00000513566.1:ENST00000514735.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	82	2	2.91851	2.989725	3.06094	0.0130672	8.54457e-4	0.093385	0.0265194
chr22	17646973	17647073	7475102	0	+	0.5	(0.476,0.515]	chr22	762152	77	INTRON	INTRON	BCL2L13	ENSG00000099968.18	ENST00000399781.5:ENST00000399782.5:ENST00000337612.9:ENST00000418951.6:ENST00000538149.5:ENST00000543133.5:ENST00000611738.4:ENST00000616863.4:ENST00000618481.4:ENST00000498133.5:ENST00000317582.10:ENST00000464649.1:ENST00000493680.5:ENST00000355028.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	49	2	2.48527	2.98969	3.49411	0.03496	9.23453e-4	0.13747500000000001	0.0278392
chr4	102800953	102801053	2213083	0	-	0.29	(0.28,0.32]	chr4	216735	1	SS5_PROX	SS5_PROX:INTRON	UBE2D3	ENSG00000109332.20	ENST00000453744.7:ENST00000394804.6:ENST00000618836.4:ENST00000394803.9:ENST00000394801.8:ENST00000343106.9:ENST00000508474.5:ENST00000503742.5:ENST00000321805.11:ENST00000350435.11:ENST00000338145.7:ENST00000349311.12:ENST00000504211.5:ENST00000505009.5:ENST00000357194.10:ENST00000505207.5:ENST00000507845.5:ENST00000502404.5:ENST00000508635.5:ENST00000505307.5:ENST00000510129.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	45	2	1.94591	2.98968	4.03345	0.0704058	0.0228482	0.184298	0.125519
chr19	898539	898639	7110781	0	-	0.43	(0.408,0.44]	chr19	714142	6	INTRON	INTRON	R3HDM4	ENSG00000198858.10	ENST00000589428.5:ENST00000361574.10:ENST00000587975.2:ENST00000591829.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	162	2	2.83246	2.98966	3.14686	2.73516e-4	2.53705e-5	0.0151711	0.00394505
chr17	17225793	17225888	6735953	0	-	0.557895	(0.515,0.57]	chr17	660909	14	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	FLCN	ENSG00000154803.13	ENST00000285071.9:ENST00000389169.9:ENST00000417064.1:ENST00000389171.4:ENST00000389168.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	42	2	2.83188	2.9895899999999997	3.1473	0.0108207	0.00397184	0.0920575	0.0549214
chr5	177305150	177305250	2555416	0	+	0.41	(0.408,0.44]	chr5	244086	3	SS5_PROX	SS5_PROX:INTRON	PRELID1	ENSG00000169230.10	ENST00000303204.9:ENST00000511309.5:ENST00000510797.1:ENST00000504594.5:ENST00000503216.5:ENST00000503853.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	34	2	2.00228	2.989535	3.97679	0.0389732	0.0299485	0.143072	0.142135
chr11	578791	578891	4719594	0	+	0.52	(0.515,0.57]	chr11	436159	18	INTRON	INTRON	PHRF1	ENSG00000070047.13	ENST00000264555.10:ENST00000416188.3:ENST00000534320.5:ENST00000413872.6:ENST00000533464.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	58	2	2.92045	2.98942	3.05839	0.00485936	0.00128922	0.0640618	0.0328334
chr1	225412549	225412645	645596	0	-	0.416667	(0.408,0.44]	chr1	76354	2	CDS	CDS:EXON_MRNA	LBR	ENSG00000143815.15	ENST00000272163.9:ENST00000338179.6:ENST00000651341.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	15	295	2	2.63476	2.989305	3.34385	1.01001e-4	5.38644e-7	0.00906611	3.95293e-4
chr2	101271308	101271395	1199165	0	-	0.425287	(0.408,0.44]	chr2	128133	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	RNF149	ENSG00000163162.9	ENST00000485752.1:ENST00000424632.5	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	2	48	2	2.71911	2.9892950000000003	3.25948	0.0189489	0.00246454	0.108861	0.0459102
chr3	32742664	32742764	1393703	0	+	0.41	(0.408,0.44]	chr3	145926	48	INTRON	INTRON	CNOT10	ENSG00000182973.20	ENST00000331889.10:ENST00000328834.10:ENST00000435630.5:ENST00000454516.7:ENST00000416457.5:ENST00000430408.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	48	2	2.71911	2.9892950000000003	3.25948	0.0189489	0.00246454	0.108861	0.0459102
chr13	110664476	110664568	5649688	0	-	0.423913	(0.408,0.44]	chr13	538241	6	INTRON	INTRON	CARS2	ENSG00000134905.17	ENST00000257347.9:ENST00000537802.5:ENST00000481787.6:ENST00000535615.5:ENST00000535398.5:ENST00000543487.5:ENST00000541362.5:ENST00000545506.5:ENST00000539405.1:ENST00000537743.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	48	2	2.95296	2.989045	3.02513	0.00929354	0.0059965	0.0817766	0.0700606
chr11	47466031	47466131	4949500	0	-	0.37	(0.35,0.378]	chr11	464136	2	UTR3	UTR3:EXON_MRNA	CELF1	ENSG00000149187.19	ENST00000310513.10:ENST00000687097.1:ENST00000395290.6	protein_coding	protein_coding	protein_coding	protein_coding	5	95	2	2.36666	2.988995	3.61133	0.00212276	9.14099e-4	0.0426185	0.0278396
chr9	98834050	98834150	4173918	0	+	0.48	(0.476,0.515]	chr9	380373	17	INTRON	INTRON	GALNT12	ENSG00000119514.7	ENST00000375011.4:ENST00000610463.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	98	2	1.84346	2.9889	4.13434	0.0114152	5.88252e-5	0.095586	0.00669884
chr6	27123126	27123221	3072294	0	-	0.431579	(0.408,0.44]	chr6	285569	6	EXON_LNCRNA	EXON_LNCRNA	ENSG00000272468	ENSG00000272468.1	ENST00000607175.1	lncRNA	lncRNA	lncRNA	lncRNA	20	385	2	2.71638	2.98886	3.26134	8.0223e-6	1.9159e-6	0.00203064	9.42656e-4
chr6	7149595	7149695	2798783	0	+	0.34	(0.32,0.35]	chr6	263733	84	INTRON	INTRON	RREB1	ENSG00000124782.21	ENST00000379933.7:ENST00000491191.5:ENST00000471433.5:ENST00000379938.7:ENST00000467782.5:ENST00000349384.10:ENST00000334984.10:ENST00000475946.5:ENST00000483150.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	55	2	2.74415	2.98873	3.23331	0.0198267	0.00315414	0.109608	0.0515261
chr1	235312221	235312321	663703	0	-	0.43	(0.408,0.44]	chr1	78552	511	INTRON	INTRON	ARID4B	ENSG00000054267.22	ENST00000349213.7:ENST00000366603.6:ENST00000264183.9:ENST00000421364.5:ENST00000491632.5:ENST00000418304.1:ENST00000466653.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	125	2	2.62147	2.98868	3.35589	0.00180223	2.36834e-5	0.0382461	0.00380885
chr1	61699270	61699368	468109	0	-	0.5	(0.476,0.515]	chr1	56559	19	UTR3	UTR3:EXON_MRNA:INTRON	TM2D1	ENSG00000162604.12	ENST00000606498.5:ENST00000294613.9:ENST00000371180.6:ENST00000488206.5:ENST00000472989.5:ENST00000468586.5:ENST00000371178.5:ENST00000494926.5:ENST00000496465.1:ENST00000371177.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	102	2	2.59108	2.98867	3.38626	0.00196853	1.1754e-4	0.0402283	0.00930356
chr18	57565551	57565650	6980256	0	-	0.323232	(0.32,0.35]	chr18	690603	22	INTRON	INTRON	FECH	ENSG00000066926.13	ENST00000262093.11:ENST00000652755.1:ENST00000651787.1:ENST00000382873.8:ENST00000585494.5:ENST00000682485.1:ENST00000592699.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	55	2	2.89743	2.9885900000000003	3.07975	0.0127608	0.00554235	0.0926667	0.0674105
chr2	32365248	32365347	730860	0	+	0.272727	[0,0.28]	chr2	84274	74	INTRON	INTRON	BIRC6	ENSG00000115760.15	ENST00000421745.7:ENST00000648282.1	protein_coding	protein_coding	protein_coding	protein_coding	4	124	2	2.79363	2.9885599999999997	3.18349	0.00466792	6.16875e-4	0.0600108	0.0223951
chr2	32574159	32574258	733037	0	+	0.474747	(0.44,0.476]	chr2	84650	79	INTRON	INTRON	BIRC6	ENSG00000115760.15	ENST00000421745.7:ENST00000471232.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	105	2	2.2543	2.988525	3.72275	0.00787184	1.58448e-5	0.076155	0.00300937
chr20	5583189	5583287	7312061	0	-	0.438776	(0.408,0.44]	chr20	744590	27	INTRON	INTRON	GPCPD1	ENSG00000125772.14	ENST00000379019.7:ENST00000481038.5:ENST00000481690.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	78	2	2.00629	2.988515	3.97074	0.0189661	8.66152e-5	0.108861	0.00783027
chr5	88270065	88270164	2412073	0	+	0.353535	(0.35,0.378]	chr5	232535	7	EXON_LNCRNA	EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TMEM161B-DT	ENSG00000247828.9	ENST00000504922.6:ENST00000661377.2:ENST00000658478.1:ENST00000501869.7:ENST00000688087.1:ENST00000513011.2:ENST00000654762.1:ENST00000666577.1:ENST00000664347.1:ENST00000658094.1:ENST00000661627.1:ENST00000663476.1:ENST00000669353.1:ENST00000688523.1:ENST00000664546.1:ENST00000688118.1:ENST00000663490.1:ENST00000656903.1:ENST00000689901.1:ENST00000653918.1:ENST00000668471.1:ENST00000659093.1:ENST00000504636.2:ENST00000666808.1:ENST00000671394.1:ENST00000662970.2:ENST00000661351.1:ENST00000688398.1:ENST00000660783.1:ENST00000670030.1:ENST00000664462.1:ENST00000659005.2:ENST00000655966.1:ENST00000670451.1:ENST00000670873.1:ENST00000501715.6:ENST00000657972.2:ENST00000658611.1:ENST00000692797.1:ENST00000504769.5:ENST00000653898.1:ENST00000667139.1:ENST00000684909.1:ENST00000656152.1:ENST00000659215.1:ENST00000669465.1:ENST00000659938.1:ENST00000507736.2:ENST00000667511.1:ENST00000665926.1:ENST00000513694.2:ENST00000693402.1:ENST00000496733.6:ENST00000510087.6:ENST00000506584.5:ENST00000669796.1:ENST00000512724.5:ENST00000668037.1:ENST00000657617.1:ENST00000686930.1:ENST00000667127.1	lncRNA	lncRNA	lncRNA	lncRNA	3	69	2	2.76192	2.9882400000000002	3.21456	0.00420814	0.00265021	0.0572185	0.0474328
chr1	75786449	75786524	144615	0	+	0.52	(0.515,0.57]	chr1	16316	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ACADM:RABGGTB	ENSG00000117054.15:ENSG00000137955.16	ENST00000528016.1:ENST00000496055.5:ENST00000485459.5:ENST00000473406.5:ENST00000370826.3:ENST00000497648.1:ENST00000319942.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	13	191	2	1.95742	2.9882	4.01898	0.00136168	2.89161e-7	0.0339121	2.89707e-4
chr11	61442740	61442840	4796654	0	+	0.48	(0.476,0.515]	chr11	444313	40	INTRON	INTRON	ENSG00000256591:SDHAF2	ENSG00000256591.5:ENSG00000167985.7	ENST00000544025.5:ENST00000542794.5:ENST00000541135.5:ENST00000542074.1:ENST00000536670.5:ENST00000301761.7:ENST00000538594.5:ENST00000537782.5:ENST00000359614.9:ENST00000544801.5:ENST00000544880.1:ENST00000543265.1:ENST00000543044.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	76	2	2.3346	2.9879350000000002	3.64127	0.00494807	6.42302e-4	0.0646039	0.0231685
chr2	235532137	235532237	1041718	0	+	0.36	(0.35,0.378]	chr2	111222	72	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1:ENST00000402604.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	84	2	2.10109	2.987845	3.8746	0.014685	1.66811e-4	0.0983813	0.0111796
chr16	57180580	57180675	6493053	0	-	0.431579	(0.408,0.44]	chr16	627981	14	INTRON	INTRON	PSME3IP1	ENSG00000172775.17	ENST00000309137.13:ENST00000566077.5:ENST00000567439.5:ENST00000564108.5:ENST00000562324.5:ENST00000567044.5:ENST00000565458.5:ENST00000562406.5:ENST00000566584.5:ENST00000568671.5:ENST00000565760.5:ENST00000566481.5:ENST00000570184.1:ENST00000566681.1:ENST00000565353.1:ENST00000562400.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	86	2	2.92033	2.9878299999999998	3.05533	0.00162151	6.50769e-4	0.0367655	0.0231135
chr6	156945197	156945297	3008842	0	+	0.37	(0.35,0.378]	chr6	281124	14	INTRON	INTRON	ARID1B	ENSG00000049618.24	ENST00000346085.10:ENST00000636930.2:ENST00000647938.1:ENST00000350026.10:ENST00000674298.1:ENST00000674190.1:ENST00000414678.7:ENST00000638000.1:ENST00000319584.11:ENST00000452544.2:ENST00000637887.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	85	2	2.15877	2.98775	3.81673	0.0102036	3.76372e-4	0.089002	0.0179911
chr1	1528062	1528162	2028	0	+	0.44	(0.408,0.44]	chr1	518	2	SS5_PROX	SS5_PROX:INTRON	ATAD3A	ENSG00000197785.14	ENST00000378756.8:ENST00000672388.1:ENST00000378755.9:ENST00000339113.9:ENST00000536055.6:ENST00000400830.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	65	2	2.6117	2.98774	3.36378	0.00555224	0.0016048	0.0648867	0.0367961
chr12	132086867	132086963	5250208	0	+	0.4375	(0.408,0.44]	chr12	499285	12	INTRON	INTRON	EP400P1	ENSG00000185684.16	ENST00000407361.8:ENST00000446190.5:ENST00000690966.1:ENST00000689047.1:ENST00000454179.7:ENST00000689533.1:ENST00000688036.1:ENST00000688136.1:ENST00000488030.5:ENST00000389560.6:ENST00000689403.1:ENST00000443539.6:ENST00000392352.5:ENST00000613241.1:ENST00000539205.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	3	65	2	2.6117	2.98774	3.36378	0.00555224	0.0016048	0.0648867	0.0367961
chr16	22288244	22288342	6321517	0	+	0.44898	(0.44,0.476]	chr16	605178	44	UTR3	UTR3:EXON_MRNA	EEF2K	ENSG00000103319.12	ENST00000263026.10	protein_coding	protein_coding	protein_coding	protein_coding	3	64	2	2.33899	2.987685	3.63638	0.0142027	4.74104e-4	0.0959987	0.0196816
chr12	46268225	46268325	5316520	0	-	0.55	(0.515,0.57]	chr12	505754	3	SS5_PROX	SS5_PROX:INTRON	SLC38A1	ENSG00000111371.16	ENST00000398637.10:ENST00000439706.5:ENST00000549049.5:ENST00000546893.5:ENST00000549633.5:ENST00000551506.1:ENST00000550173.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	100	2	2.72308	2.9876	3.25212	2.69455e-4	2.5577e-4	0.0148225	0.0145437
chr17	5425080	5425178	6551776	0	+	0.408163	(0.378,0.408]	chr17	636009	19	INTRON	INTRON	RPAIN	ENSG00000129197.15	ENST00000573577.5:ENST00000571558.5:ENST00000575599.5:ENST00000571043.5:ENST00000571613.5:ENST00000539417.6:ENST00000381208.9:ENST00000536255.6:ENST00000327154.10:ENST00000381209.8:ENST00000575112.5:ENST00000570883.5:ENST00000573126.1:ENST00000405578.8:ENST00000574003.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	36	2	1.65821	2.9875999999999996	4.31699	0.0506302	0.0250408	0.17547	0.12011
chr2	26374939	26375039	715305	0	+	0.39	(0.378,0.408]	chr2	82597	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	SELENOI	ENSG00000138018.19	ENST00000260585.12:ENST00000447170.1	protein_coding	protein_coding	protein_coding	protein_coding	3	36	2	1.65821	2.9875999999999996	4.31699	0.0506302	0.0250408	0.17547	0.12011
chr7	35807766	35807866	3305961	0	+	0.4	(0.378,0.408]	chr7	306967	61	INTRON	INTRON	SEPTIN7	ENSG00000122545.21	ENST00000399034.7:ENST00000435235.6:ENST00000350320.11:ENST00000672279.1:ENST00000634600.1:ENST00000635669.1:ENST00000635175.1:ENST00000475109.5:ENST00000635047.1:ENST00000493626.5:ENST00000473201.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	36	2	1.65821	2.9875999999999996	4.31699	0.0506302	0.0250408	0.17547	0.12011
chr4	39735321	39735421	1953364	0	+	0.48	(0.476,0.515]	chr4	195630	366	INTRON	INTRON	UBE2K	ENSG00000078140.14	ENST00000510934.5:ENST00000261427.10:ENST00000438068.6:ENST00000513231.5:ENST00000503368.5:ENST00000445950.2:ENST00000510719.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	102	2	2.64581	2.987565	3.32932	0.00154394	1.60666e-4	0.0357205	0.0109124
chr10	118686268	118686344	4703719	0	-	0.434211	(0.408,0.44]	chr10	433846	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CACUL1	ENSG00000151893.15	ENST00000544392.5:ENST00000369151.8:ENST00000493518.5:ENST00000490610.1:ENST00000489169.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	29	2	1.85305	2.9874600000000004	4.12187	0.0543543	0.0354689	0.182243	0.137535
chr12	64413428	64413526	5152971	0	+	0.418367	(0.408,0.44]	chr12	487727	30	INTRON	INTRON	XPOT	ENSG00000184575.12	ENST00000332707.10:ENST00000540203.5:ENST00000400935.2	protein_coding	protein_coding	protein_coding	protein_coding	2	29	2	1.85305	2.9874600000000004	4.12187	0.0543543	0.0354689	0.182243	0.137535
chr16	4857489	4857589	6283394	0	+	0.44	(0.408,0.44]	chr16	601543	1	SS3_PROX	SS3_PROX:INTRON	UBN1	ENSG00000118900.15	ENST00000592120.5:ENST00000262376.11:ENST00000590769.5:ENST00000396658.8	protein_coding	protein_coding	protein_coding	protein_coding	2	29	2	1.85305	2.9874600000000004	4.12187	0.0543543	0.0354689	0.182243	0.137535
chr6	133966861	133966960	2961893	0	+	0.424242	(0.408,0.44]	chr6	278509	131	INTRON	INTRON	TBPL1	ENSG00000028839.10	ENST00000613034.4:ENST00000416965.5:ENST00000457715.1:ENST00000367871.5:ENST00000237264.9:ENST00000367869.1	protein_coding	protein_coding	protein_coding	protein_coding	2	29	2	1.85305	2.9874600000000004	4.12187	0.0543543	0.0354689	0.182243	0.137535
chr6	169713536	169713635	3267232	0	-	0.434343	(0.408,0.44]	chr6	303289	6	INTRON	INTRON	PHF10	ENSG00000130024.15	ENST00000339209.9:ENST00000366780.8:ENST00000621772.4:ENST00000480008.1:ENST00000612128.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	29	2	1.85305	2.9874600000000004	4.12187	0.0543543	0.0354689	0.182243	0.137535
chr5	177331912	177331998	2777402	0	-	0.372093	(0.35,0.378]	chr5	261668	5	UTR3	UTR3:EXON_MRNA:INTRON	LMAN2	ENSG00000169223.16	ENST00000694903.1:ENST00000303127.12:ENST00000694904.1:ENST00000502721.6:ENST00000694905.1:ENST00000504071.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	93	2	2.82526	2.987365	3.14947	0.00269503	4.50721e-4	0.0466389	0.0192381
chr22	31955441	31955539	7507007	0	+	0.489796	(0.476,0.515]	chr22	766155	47	INTRON	INTRON	YWHAH	ENSG00000128245.15	ENST00000397492.1:ENST00000443669.5:ENST00000248975.6:ENST00000479649.1:ENST00000471374.1:ENST00000420430.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	88	2	2.72507	2.987335	3.2496	0.0029369	3.39435e-4	0.0496505	0.0170719
chr12	123183705	123183805	5443556	0	-	0.48	(0.476,0.515]	chr12	520806	21	INTRON	INTRON	MPHOSPH9	ENSG00000051825.15	ENST00000606320.6:ENST00000541076.6:ENST00000545556.6:ENST00000302373.8:ENST00000539024.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	29	2	1.8388	2.98733	4.13586	0.0564473	0.031846	0.184423	0.13151
chr4	99061217	99061317	2003381	0	+	0.51	(0.476,0.515]	chr4	199887	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	METAP1	ENSG00000164024.12	ENST00000296411.11:ENST00000510133.5:ENST00000514051.1	protein_coding	protein_coding	protein_coding	protein_coding	2	29	2	1.8388	2.98733	4.13586	0.0564473	0.031846	0.184423	0.13151
chr5	140654827	140654927	2504482	0	+	0.5	(0.476,0.515]	chr5	239471	1	SS5_PROX	SS5_PROX:INTRON	IK	ENSG00000113141.19	ENST00000417647.7:ENST00000508301.5	protein_coding	protein_coding	protein_coding	protein_coding	2	29	2	1.8388	2.98733	4.13586	0.0564473	0.031846	0.184423	0.13151
chr9	137625846	137625946	4223540	0	+	0.48	(0.476,0.515]	chr9	388152	54	INTRON	INTRON	EHMT1	ENSG00000181090.21	ENST00000462484.5:ENST00000371394.6:ENST00000630754.2:ENST00000460843.6:ENST00000626216.2:ENST00000637593.1:ENST00000629335.2:ENST00000637335.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	29	2	1.8388	2.98733	4.13586	0.0564473	0.031846	0.184423	0.13151
chr17	36535801	36535901	6601816	0	+	0.42	(0.408,0.44]	chr17	642530	2	SS5_PROX	SS5_PROX:INTRON	PIGW	ENSG00000277161.2	ENST00000614443.2:ENST00000619326.1:ENST00000620233.1	protein_coding	protein_coding	protein_coding	protein_coding	3	40	2	1.64062	2.98731	4.334	0.0557275	0.011982	0.165463	0.0962115
chr12	24945526	24945623	5297877	0	-	0.515464	(0.515,0.57]	chr12	503885	2	EXON_LNCRNA	EXON_LNCRNA:INTRON	BCAT1	ENSG00000060982.15	ENST00000261192.12:ENST00000342945.9:ENST00000539780.5:ENST00000546285.1:ENST00000355164.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	75	2	2.53845	2.987215	3.43598	0.00632226	7.05043e-5	0.0687526	0.00694412
chr3	172154565	172154665	1560700	0	+	0.56	(0.515,0.57]	chr3	161551	56	INTRON	INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000421757.5:ENST00000469491.5:ENST00000336824.8:ENST00000423424.5:ENST00000416957.5:ENST00000478016.1:ENST00000443501.1:ENST00000476794.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	56	2	2.39351	2.987075	3.58064	0.0100431	6.54693e-4	0.0881096	0.0233335
chrX	3918696	3918795	7747783	0	-	0.545455	(0.515,0.57]	chrX	793160	121	INTRON	INTRON	ENSG00000285756	ENSG00000285756.2	ENST00000650538.1:ENST00000381106.4	lncRNA	lncRNA	lncRNA	lncRNA	3	56	2	2.39351	2.987075	3.58064	0.0100431	6.54693e-4	0.0881096	0.0233335
chr1	246896225	246896325	681594	0	-	0.33	(0.32,0.35]	chr1	79980	3	SS3_PROX	SS3_PROX:INTRON	AHCTF1	ENSG00000153207.16	ENST00000648844.2:ENST00000326225.3:ENST00000366508.5:ENST00000470300.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	74	2	2.89475	2.98705	3.07935	0.00724137	0.00160352	0.0729826	0.0367961
chr4	62549	62648	1905382	0	+	0.333333	(0.32,0.35]	chr4	191003	20	INTRON	INTRON	ZNF595	ENSG00000272602.6	ENST00000608255.2:ENST00000609518.5:ENST00000509152.3:ENST00000610261.6	protein_coding	protein_coding	protein_coding	protein_coding	14	294	2	2.42895	2.98698	3.54501	1.4209e-4	8.89464e-6	0.0103049	0.00229645
chr17	50728662	50728762	6627059	0	+	0.51	(0.476,0.515]	chr17	647183	43	INTRON	INTRON	LUC7L3	ENSG00000108848.16	ENST00000625349.2:ENST00000508045.5:ENST00000508218.5:ENST00000509335.5:ENST00000506686.5:ENST00000393227.6:ENST00000504563.6:ENST00000505658.6:ENST00000240304.5:ENST00000508482.5:ENST00000505619.5:ENST00000510984.5:ENST00000507200.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	88	2	2.51682	2.986965	3.45711	0.00140905	9.59562e-4	0.0340865	0.0284801
chr1	17436341	17436440	384953	0	-	0.454545	(0.44,0.476]	chr1	45493	68	INTRON	INTRON	RCC2	ENSG00000179051.14	ENST00000375436.9:ENST00000375433.3	protein_coding	protein_coding	protein_coding	protein_coding	7	143	2	2.90834	2.986935	3.06553	1.76007e-4	1.35514e-4	0.01216	0.0100405
chr11	33160198	33160298	4940967	0	-	0.38	(0.378,0.408]	chr11	462884	30	INTRON	INTRON	CSTF3	ENSG00000176102.13	ENST00000323959.9:ENST00000524827.6:ENST00000526480.1:ENST00000438862.6:ENST00000431742.2:ENST00000524556.1:ENST00000524775.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	69	2	2.00398	2.986875	3.96977	0.0393906	9.19167e-5	0.143072	0.00801007
chr1	32791754	32791852	415903	0	-	0.408163	(0.378,0.408]	chr1	50188	1	INTRON	INTRON	YARS1	ENSG00000134684.13	ENST00000373477.9:ENST00000676297.1:ENST00000674654.1:ENST00000674629.1:ENST00000675785.2:ENST00000481895.6:ENST00000616261.2:ENST00000466052.1:ENST00000470377.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	67	2	2.95459	2.986725	3.01886	0.00957623	7.99379e-4	0.0820838	0.0258804
chr17	46123336	46123436	6784169	0	-	0.4	(0.378,0.408]	chr17	669216	21	INTRON	INTRON	KANSL1	ENSG00000120071.15	ENST00000574590.6:ENST00000572904.6:ENST00000432791.7:ENST00000575318.6:ENST00000638275.1:ENST00000262419.10:ENST00000648792.1:ENST00000639531.1:ENST00000639150.1:ENST00000639853.1:ENST00000571698.2:ENST00000639375.1:ENST00000638269.1:ENST00000576248.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	82	2	2.45465	2.986625	3.5186	0.00381582	8.45009e-4	0.0542786	0.0263813
chr6	27132750	27132795	3072367	0	-	0.444444	(0.44,0.476]	chr6	285581	1	UTR5	UTR5:EXON_MRNA	H2BC11	ENSG00000124635.9	ENST00000339812.3	protein_coding	protein_coding	protein_coding	protein_coding	13	220	2	2.5514	2.986585	3.42177	4.43594e-5	2.89989e-5	0.00540124	0.00447916
chr16	21898386	21898486	6462252	0	-	0.25	[0,0.28]	chr16	623550	1	SS5_PROX	SS5_PROX:INTRON	SMG1P4	ENSG00000185710.9	ENST00000523028.5	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	3	91	2	2.6958	2.98644	3.27708	0.00517359	0.00456758	0.0631676	0.0622215
chr19	1272618	1272705	6994622	0	+	0.287356	(0.28,0.32]	chr19	693002	3	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	CIRBP	ENSG00000099622.14	ENST00000588030.5:ENST00000586472.5:ENST00000588090.5:ENST00000591935.5:ENST00000586548.5:ENST00000585913.5:ENST00000589710.5:ENST00000586773.5:ENST00000587896.6:ENST00000593093.5:ENST00000413636.6:ENST00000590704.5:ENST00000590347.5:ENST00000587169.5:ENST00000320936.9:ENST00000586636.5:ENST00000591376.5:ENST00000591055.5:ENST00000589235.5:ENST00000585914.5:ENST00000588344.2:ENST00000592234.5:ENST00000444172.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	22	552	2	2.84392	2.9863099999999996	3.1287	9.45132e-6	8.56513e-6	0.00236268	0.00210871
chr1	41182533	41182632	430229	0	-	0.444444	(0.44,0.476]	chr1	52248	197	INTRON	INTRON	SCMH1	ENSG00000010803.17	ENST00000695335.1:ENST00000372596.5:ENST00000372597.5:ENST00000337495.9:ENST00000695336.1	protein_coding	protein_coding	protein_coding	protein_coding	3	65	2	2.39003	2.98611	3.58219	0.0106488	8.57842e-4	0.0915714	0.0267428
chr16	85203862	85203962	6411867	0	+	0.43	(0.408,0.44]	chr16	615455	186	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	2	32	2	1.74775	2.98611	4.22447	0.0735403	0.0161655	0.190238	0.109464
chr9	33942262	33942362	4244759	0	-	0.43	(0.408,0.44]	chr9	390391	4	SS3_PROX	SS3_PROX:INTRON	UBAP2	ENSG00000137073.24	ENST00000379238.7:ENST00000683659.1:ENST00000682239.1:ENST00000683140.1:ENST00000682209.1:ENST00000681980.1:ENST00000360802.6:ENST00000683252.1:ENST00000684158.1:ENST00000682914.1:ENST00000683717.1:ENST00000379239.9:ENST00000683084.1:ENST00000684754.1:ENST00000629575.2:ENST00000379225.2:ENST00000684298.1:ENST00000412543.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	77	2	2.64127	2.98597	3.33067	0.0024459	0.00125199	0.0445752	0.0328543
chr11	47827694	47827793	4951958	0	-	0.40404	(0.378,0.408]	chr11	464617	1	INTRON	INTRON	NUP160	ENSG00000030066.14	ENST00000694866.1:ENST00000378460.7:ENST00000530326.5:ENST00000528071.5:ENST00000528501.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	80	2	2.10212	2.985815	3.86951	0.0141232	1.55755e-4	0.0959618	0.0106835
chr16	24735481	24735581	6329271	0	+	0.33	(0.32,0.35]	chr16	605933	48	INTRON	INTRON	TNRC6A	ENSG00000090905.19	ENST00000566108.2:ENST00000395799.8:ENST00000315183.11:ENST00000562829.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	120	2	2.60833	2.9857500000000003	3.36317	0.00240033	1.69213e-4	0.0440612	0.0112853
chr22	21841331	21841431	7561123	0	-	0.35	(0.32,0.35]	chr22	773388	331	INTRON	INTRON	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	8	184	2	2.67447	2.985665	3.29686	2.536e-4	9.94828e-5	0.0141934	0.00903184
chr12	46370011	46370111	5316674	0	-	0.42	(0.408,0.44]	chr12	505811	1	SS5_PROX	SS5_PROX:INTRON	SLC38A2	ENSG00000134294.14	ENST00000256689.10:ENST00000549258.5:ENST00000612232.1:ENST00000547252.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	68	2	2.21238	2.9856	3.75882	0.0193525	4.04678e-4	0.119831	0.0185763
chr1	1673887	1673985	360770	0	-	0.479592	(0.476,0.515]	chr1	41997	19	INTRON	INTRON	SLC35E2B	ENSG00000189339.12	ENST00000614300.4:ENST00000617444.5:ENST00000611123.1:ENST00000481276.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	12	207	2	2.21347	2.98558	3.75769	7.20767e-4	1.66472e-6	0.0246644	7.80039e-4
chr3	47006713	47006801	1418041	0	+	0.5	(0.476,0.515]	chr3	148949	4	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NBEAL2	ENSG00000160796.18	ENST00000450053.8:ENST00000651747.1:ENST00000416683.5:ENST00000443829.5:ENST00000651453.1:ENST00000423436.1:ENST00000651350.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	63	2	2.72507	2.9855150000000004	3.24596	0.00322919	0.0029369	0.0507087	0.0496505
chr5	32593673	32593772	2334835	0	+	0.474747	(0.44,0.476]	chr5	225364	16	INTRON	INTRON	SUB1	ENSG00000113387.12	ENST00000506237.5:ENST00000512913.5:ENST00000513013.5:ENST00000265073.9:ENST00000511615.5:ENST00000515355.5:ENST00000502897.5:ENST00000504789.5:ENST00000504016.1:ENST00000511175.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	85	2	2.81462	2.985505	3.15639	0.00247064	3.93757e-4	0.0446195	0.0178567
chr5	139582981	139583081	2500720	0	+	0.53	(0.515,0.57]	chr5	239026	202	INTRON	INTRON	UBE2D2	ENSG00000131508.16	ENST00000511725.5:ENST00000505007.5:ENST00000398733.8:ENST00000510470.1:ENST00000398734.8:ENST00000505548.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	88	2	2.73346	2.985405	3.23735	8.38802e-4	2.1866e-4	0.0266487	0.0129728
chr7	131353756	131353856	3416701	0	+	0.27	[0,0.28]	chr7	319187	254	INTRON	INTRON	MKLN1	ENSG00000128585.18	ENST00000421797.6:ENST00000416992.6:ENST00000429546.5:ENST00000446815.5:ENST00000494286.5:ENST00000352689.11:ENST00000494785.5:ENST00000458153.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	68	2	2.59548	2.9853899999999998	3.3753	0.0346067	0.00242466	0.136649	0.0454587
chr19	48120755	48120853	7197283	0	-	0.459184	(0.44,0.476]	chr19	729420	7	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	LIG1	ENSG00000105486.14	ENST00000263274.12:ENST00000536218.5:ENST00000427526.6:ENST00000594759.5:ENST00000594067.5:ENST00000601091.5:ENST00000613670.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	156	2	2.50024	2.985225	3.47021	7.41088e-4	1.14089e-5	0.0250148	0.00249332
chr3	9989540	9989638	1361995	0	+	0.285714	(0.28,0.32]	chr3	143392	4	INTRON	INTRON	EMC3-AS1	ENSG00000180385.9	ENST00000692142.1:ENST00000366264.6:ENST00000693066.1:ENST00000326237.3:ENST00000440568.1:ENST00000438698.1:ENST00000424904.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	8	144	2	1.86208	2.98521	4.10834	0.0065898	1.53575e-4	0.0737338	0.0113219
chr7	157162110	157162210	3454171	0	+	0.25	[0,0.28]	chr7	322895	224	INTRON	INTRON	UBE3C	ENSG00000009335.18	ENST00000611269.4:ENST00000348165.10:ENST00000389103.4:ENST00000430750.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	71	2	2.33055	2.98518	3.63981	0.062338	8.51767e-4	0.175343	0.0264928
chr19	934738	934838	6992577	0	+	0.61	(0.57,1]	chr19	692392	16	INTRON	INTRON	ARID3A	ENSG00000116017.11	ENST00000263620.8:ENST00000587532.5:ENST00000457152.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	73	2	1.09783	2.98511	4.87239	0.0678042	4.15367e-8	0.184298	8.25193e-5
chr17	66341058	66341158	6662682	0	+	0.39	(0.378,0.408]	chr17	650324	11	INTRON	INTRON	PRKCA	ENSG00000154229.12	ENST00000413366.8:ENST00000578063.5:ENST00000284384.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	102	2	1.84742	2.985105	4.12279	0.013385	3.95714e-5	0.0946278	0.00509892
chr16	88729732	88729830	6539635	0	-	0.591837	(0.57,1]	chr16	633912	17	INTRON	INTRON	PIEZO1	ENSG00000103335.22	ENST00000301015.14	protein_coding	protein_coding	protein_coding	protein_coding	11	92	2	1.77518	2.98509	4.195	0.00402813	1.71438e-7	0.0578376	2.02516e-4
chr6	104778592	104778689	3171664	0	-	0.463918	(0.44,0.476]	chr6	295843	9	INTRON	INTRON	HACE1	ENSG00000085382.12	ENST00000262903.9:ENST00000369127.8:ENST00000416605.6:ENST00000517995.5:ENST00000369125.6:ENST00000518503.5:ENST00000517424.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	64	2	2.49823	2.9850149999999998	3.4718	0.00718224	0.00136358	0.0756118	0.0336321
chr8	102391094	102391194	4012540	0	-	0.5	(0.476,0.515]	chr8	367237	291	INTRON	INTRON	UBR5	ENSG00000104517.13	ENST00000520539.6:ENST00000220959.8:ENST00000521922.5	protein_coding	protein_coding	protein_coding	protein_coding	6	100	2	2.51245	2.9847799999999998	3.45711	0.00140905	4.93325e-4	0.0340865	0.0201056
chr1	1566809	1566909	360242	0	-	0.45	(0.44,0.476]	chr1	41853	15	INTRON	INTRON	SSU72	ENSG00000160075.12	ENST00000291386.4:ENST00000378725.3:ENST00000359060.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	85	2	2.88062	2.984695	3.08877	0.001878	5.52878e-4	0.039073	0.021371
chr22	19958119	19958218	7477568	0	+	0.363636	(0.35,0.378]	chr22	762571	38	INTRON	INTRON	COMT	ENSG00000093010.15	ENST00000676678.1:ENST00000403184.5:ENST00000361682.11:ENST00000403710.5:ENST00000407537.5:ENST00000467943.5:ENST00000678868.1:ENST00000678769.1:ENST00000428707.2:ENST00000412786.5:ENST00000207636.9:ENST00000406520.7:ENST00000678255.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	69	2	2.63527	2.98465	3.33403	0.00443588	0.00272701	0.061054	0.0467523
chr1	1752706	1752804	361457	0	-	0.418367	(0.408,0.44]	chr1	42148	16	UTR3	UTR3:EXON_MRNA	NADK	ENSG00000008130.15	ENST00000378625.5:ENST00000341991.7:ENST00000341426.9:ENST00000342348.9	protein_coding	protein_coding	protein_coding	protein_coding	8	159	2	2.57162	2.984625	3.39763	3.50541e-4	3.50918e-5	0.0166929	0.00499276
chr4	78838285	78838385	1982008	0	+	0.43	(0.408,0.44]	chr4	198479	42	INTRON	INTRON	BMP2K	ENSG00000138756.19	ENST00000389010.7:ENST00000502613.3:ENST00000502871.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	118	2	2.31338	2.98461	3.65584	0.00322111	2.38988e-5	0.0507087	0.00383194
chr5	140670152	140670252	2504635	0	+	0.43	(0.408,0.44]	chr5	239541	6	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	WDR55	ENSG00000120314.19	ENST00000506393.5:ENST00000358337.10:ENST00000511232.5:ENST00000504897.2:ENST00000520764.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	192	2	2.63357	2.984595	3.33562	1.4735e-4	2.6898e-5	0.0111067	0.00408175
chr10	68339955	68340055	4440846	0	+	0.33	(0.32,0.35]	chr10	409499	4	SS5_PROX	SS5_PROX:INTRON	HNRNPH3	ENSG00000096746.18	ENST00000469172.5:ENST00000265866.12:ENST00000480987.5:ENST00000354695.5:ENST00000481819.5:ENST00000491200.5:ENST00000490442.5:ENST00000478698.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	100	2	2.63115	2.98455	3.33795	0.00608073	1.93e-4	0.0676501	0.012131
chr7	157349751	157349851	3455428	0	+	0.47	(0.44,0.476]	chr7	323052	93	INTRON	INTRON	DNAJB6	ENSG00000105993.15	ENST00000441561.5:ENST00000429029.6:ENST00000262177.9:ENST00000486083.6:ENST00000417758.5:ENST00000459889.5:ENST00000443280.5:ENST00000488001.5:ENST00000441291.5:ENST00000437030.5:ENST00000412557.5:ENST00000453383.5:ENST00000439402.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	48	2	2.89047	2.984545	3.07862	0.00955699	0.0060153	0.0863913	0.0674604
chr5	177428686	177428786	2555872	0	+	0.51	(0.476,0.515]	chr5	244175	14	INTRON	INTRON	GRK6	ENSG00000198055.11	ENST00000502598.5:ENST00000506296.5:ENST00000511244.5:ENST00000355472.10:ENST00000507633.5:ENST00000393576.7:ENST00000528793.5:ENST00000355958.9:ENST00000512684.1	protein_coding	protein_coding	protein_coding	protein_coding	4	76	2	2.29359	2.984515	3.67544	0.00584957	5.51624e-4	0.0689807	0.0216014
chr2	10209214	10209313	691597	0	+	0.484848	(0.476,0.515]	chr2	81113	101	INTRON	INTRON	RRM2	ENSG00000171848.16	ENST00000381786.7	protein_coding	processed_transcript	protein_coding	processed_transcript	5	88	2	2.14989	2.9844150000000003	3.81894	0.00611105	1.96038e-4	0.0676501	0.0122528
chr1	1688386	1688485	360920	0	-	0.50505	(0.476,0.515]	chr1	42013	112	INTRON	INTRON	SLC35E2B	ENSG00000189339.12	ENST00000614300.4:ENST00000617444.5:ENST00000611123.1:ENST00000481276.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	23	2	2.13854	2.9843599999999997	3.83018	0.0776563	0.0423385	0.196285	0.161744
chr1	53325576	53325676	459832	0	-	0.48	(0.476,0.515]	chr1	55338	115	INTRON	INTRON	LRP8	ENSG00000157193.18	ENST00000306052.12:ENST00000661457.1:ENST00000668448.1:ENST00000667377.1:ENST00000658277.1:ENST00000662198.1:ENST00000657895.1:ENST00000668071.1:ENST00000480045.6:ENST00000669432.1:ENST00000465675.6:ENST00000371454.6:ENST00000662604.1:ENST00000354412.7:ENST00000658404.1:ENST00000668991.1:ENST00000347547.7:ENST00000655704.1:ENST00000659993.1:ENST00000496580.1:ENST00000654634.1:ENST00000661359.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	23	2	2.13854	2.9843599999999997	3.83018	0.0776563	0.0423385	0.196285	0.161744
chr1	179877373	179877473	593466	0	-	0.49	(0.476,0.515]	chr1	71124	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TOR1AIP2	ENSG00000169905.13	ENST00000367612.7:ENST00000609928.6:ENST00000482587.5:ENST00000495650.1:ENST00000474318.1:ENST00000483123.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	23	2	2.13854	2.9843599999999997	3.83018	0.0776563	0.0423385	0.196285	0.161744
chr10	74186376	74186476	4456120	0	+	0.51	(0.476,0.515]	chr10	411534	91	INTRON	INTRON	ADK	ENSG00000156110.15	ENST00000672429.1:ENST00000539909.6:ENST00000286621.7:ENST00000478611.2:ENST00000673352.1:ENST00000673310.1:ENST00000672920.1:ENST00000672394.1:ENST00000372734.5:ENST00000673027.1:ENST00000541550.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	23	2	2.13854	2.9843599999999997	3.83018	0.0776563	0.0423385	0.196285	0.161744
chr12	132636524	132636622	5448621	0	-	0.510204	(0.476,0.515]	chr12	521693	1	INTRON	INTRON	POLE	ENSG00000177084.18	ENST00000320574.10:ENST00000434528.4:ENST00000672742.1:ENST00000672002.1:ENST00000537064.5:ENST00000535270.5:ENST00000541213.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	23	2	2.13854	2.9843599999999997	3.83018	0.0776563	0.0423385	0.196285	0.161744
chr16	19077580	19077678	6312681	0	+	0.510204	(0.476,0.515]	chr16	604180	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	COQ7	ENSG00000167186.11	ENST00000321998.10:ENST00000566049.5:ENST00000568985.5:ENST00000569312.5:ENST00000544894.6:ENST00000569127.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	23	2	2.13854	2.9843599999999997	3.83018	0.0776563	0.0423385	0.196285	0.161744
chr17	29108375	29108473	6746652	0	-	0.5	(0.476,0.515]	chr17	663069	8	INTRON	INTRON	MYO18A	ENSG00000196535.19	ENST00000527372.7:ENST00000531253.5:ENST00000533112.5:ENST00000530254.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	23	2	2.13854	2.9843599999999997	3.83018	0.0776563	0.0423385	0.196285	0.161744
chr21	43899268	43899367	7414131	0	+	0.484848	(0.476,0.515]	chr21	755692	163	INTRON	INTRON	AGPAT3	ENSG00000160216.21	ENST00000291572.13:ENST00000448287.5:ENST00000398061.5	protein_coding	protein_coding	protein_coding	protein_coding	1	23	2	2.13854	2.9843599999999997	3.83018	0.0776563	0.0423385	0.196285	0.161744
chr22	20502123	20502222	7479288	0	+	0.484848	(0.476,0.515]	chr22	762941	9	INTRON	INTRON	MED15	ENSG00000099917.17	ENST00000445987.5	protein_coding	protein_coding	protein_coding	protein_coding	1	23	2	2.13854	2.9843599999999997	3.83018	0.0776563	0.0423385	0.196285	0.161744
chr3	28285916	28286016	1390991	0	+	0.48	(0.476,0.515]	chr3	145643	222	INTRON	INTRON	CMC1	ENSG00000187118.14	ENST00000477739.1:ENST00000423894.5:ENST00000466830.6:ENST00000334841.10:ENST00000418849.2:ENST00000396610.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	23	2	2.13854	2.9843599999999997	3.83018	0.0776563	0.0423385	0.196285	0.161744
chr3	197777837	197777937	1597617	0	+	0.49	(0.476,0.515]	chr3	165545	1	SS3_PROX	SS3_PROX:INTRON	FYTTD1	ENSG00000122068.13	ENST00000415708.6:ENST00000241502.9:ENST00000424384.2	protein_coding	protein_coding	protein_coding	protein_coding	1	23	2	2.13854	2.9843599999999997	3.83018	0.0776563	0.0423385	0.196285	0.161744
chr4	54040369	54040469	2148097	0	-	0.5	(0.476,0.515]	chr4	211312	259	INTRON	INTRON	CHIC2	ENSG00000109220.11	ENST00000263921.8:ENST00000512964.5:ENST00000510894.1	protein_coding	protein_coding	protein_coding	protein_coding	1	23	2	2.13854	2.9843599999999997	3.83018	0.0776563	0.0423385	0.196285	0.161744
chr4	139028825	139028924	2049514	0	+	0.494949	(0.476,0.515]	chr4	203265	123	INTRON	INTRON	NOCT	ENSG00000151014.6	ENST00000280614.4:ENST00000630479.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	23	2	2.13854	2.9843599999999997	3.83018	0.0776563	0.0423385	0.196285	0.161744
chr4	183118017	183118117	2083968	0	+	0.51	(0.476,0.515]	chr4	205959	180	INTRON	INTRON	WWC2	ENSG00000151718.16	ENST00000403733.8:ENST00000508614.5:ENST00000448232.6:ENST00000513834.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	23	2	2.13854	2.9843599999999997	3.83018	0.0776563	0.0423385	0.196285	0.161744
chr6	90531752	90531852	3162229	0	-	0.51	(0.476,0.515]	chr6	294916	76	INTRON	INTRON	MAP3K7	ENSG00000135341.18	ENST00000369332.7:ENST00000369327.7:ENST00000369325.7:ENST00000369329.8:ENST00000479630.1:ENST00000369320.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	23	2	2.13854	2.9843599999999997	3.83018	0.0776563	0.0423385	0.196285	0.161744
chr8	30082504	30082585	3931399	0	-	0.493827	(0.476,0.515]	chr8	360101	2	SS5_PROX	SS5_PROX:INTRON	SARAF	ENSG00000133872.14	ENST00000256255.11:ENST00000545648.2:ENST00000518174.5:ENST00000521265.5:ENST00000520303.5:ENST00000518340.1:ENST00000522055.1:ENST00000523761.1:ENST00000517569.1:ENST00000521083.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	23	2	2.13854	2.9843599999999997	3.83018	0.0776563	0.0423385	0.196285	0.161744
chrX	123694432	123694531	7878663	0	-	0.484848	(0.476,0.515]	chrX	802557	74	INTRON	INTRON	THOC2	ENSG00000125676.20	ENST00000245838.13:ENST00000355725.8:ENST00000491737.5:ENST00000433883.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	23	2	2.13854	2.9843599999999997	3.83018	0.0776563	0.0423385	0.196285	0.161744
chr10	63308116	63308216	4633811	0	-	0.38	(0.378,0.408]	chr10	426226	390	INTRON	INTRON	JMJD1C	ENSG00000171988.20	ENST00000399262.7:ENST00000633035.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	35	2	2.00398	2.9843450000000002	3.96471	0.0393906	0.032421	0.145026	0.143072
chr12	132722257	132722352	5252085	0	+	0.557895	(0.515,0.57]	chr12	499615	16	UTR3	UTR3:EXON_MRNA	PGAM5	ENSG00000247077.7	ENST00000498926.7	protein_coding	protein_coding	protein_coding	protein_coding	3	55	2	2.43783	2.98434	3.53085	0.00916404	6.59951e-4	0.0812949	0.0232396
chr3	39409699	39409792	1401815	0	+	0.537634	(0.515,0.57]	chr3	147218	6	INTRON	INTRON	RPSA	ENSG00000168028.14	ENST00000301821.11:ENST00000458478.5:ENST00000443003.2:ENST00000444512.2:ENST00000478027.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	55	2	2.48902	2.984305	3.47959	0.00760558	8.38022e-4	0.0749571	0.0263691
chr4	78791996	78792096	1981541	0	+	0.42	(0.408,0.44]	chr4	198463	149	INTRON	INTRON	BMP2K	ENSG00000138756.19	ENST00000389010.7:ENST00000502613.3:ENST00000502871.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	106	2	2.06309	2.98428	3.90547	0.00294584	2.03612e-4	0.0497776	0.0129859
chr16	88718367	88718461	6539491	0	-	0.648936	(0.57,1]	chr16	633839	7	EXON_MRNA	EXON_MRNA:INTRON	PIEZO1	ENSG00000103335.22	ENST00000301015.14:ENST00000419505.5:ENST00000484567.6:ENST00000495568.7:ENST00000466823.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	54	2	2.66249	2.984185	3.30588	9.0016e-4	1.12273e-4	0.0277303	0.00903968
chr16	88729241	88729339	6539630	0	-	0.591837	(0.57,1]	chr16	633912	12	INTRON	INTRON	PIEZO1	ENSG00000103335.22	ENST00000301015.14	protein_coding	protein_coding	protein_coding	protein_coding	5	54	2	2.66249	2.984185	3.30588	9.0016e-4	1.12273e-4	0.0277303	0.00903968
chr15	64483211	64483311	6044314	0	+	0.51	(0.476,0.515]	chr15	575688	220	INTRON	INTRON	ZNF609	ENSG00000180357.10	ENST00000326648.5:ENST00000416172.1	protein_coding	protein_coding	protein_coding	protein_coding	3	63	2	2.76855	2.9841499999999996	3.19975	0.00383299	0.00244302	0.0542786	0.0456956
chr2	171088128	171088227	1263369	0	-	0.50505	(0.476,0.515]	chr2	133909	49	INTRON	INTRON	TLK1	ENSG00000198586.14	ENST00000431350.7:ENST00000360843.7:ENST00000359766.7:ENST00000521943.5:ENST00000409443.6:ENST00000413010.5:ENST00000486857.5:ENST00000470340.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	63	2	2.76855	2.9841499999999996	3.19975	0.00383299	0.00244302	0.0542786	0.0456956
chr1	212314514	212314613	308368	0	+	0.474747	(0.44,0.476]	chr1	35572	3	INTRON	INTRON	PPP2R5A	ENSG00000066027.12	ENST00000261461.7:ENST00000537030.3:ENST00000498129.6:ENST00000479259.1:ENST00000498123.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	87	2	2.15726	2.984135	3.81101	0.00508124	3.0729e-4	0.0646039	0.0161362
chr6	75638293	75638393	2905316	0	+	0.27	[0,0.28]	chr6	274513	31	INTRON	INTRON	SENP6	ENSG00000112701.18	ENST00000370010.6:ENST00000447266.7:ENST00000327284.12:ENST00000483859.6:ENST00000424947.6	protein_coding	protein_coding	protein_coding	protein_coding	3	92	2	2.24053	2.98412	3.72771	0.0256186	5.87492e-4	0.120376	0.0220073
chr1	26239461	26239561	49537	0	+	0.51	(0.476,0.515]	chr1	6193	3	SS3_PROX	SS3_PROX:INTRON	CEP85	ENSG00000130695.16	ENST00000451429.8:ENST00000640292.2:ENST00000252992.8	protein_coding	protein_coding	protein_coding	protein_coding	6	116	2	2.59672	2.984095	3.37147	6.3664e-4	1.84258e-4	0.0228285	0.0123223
chr2	101848598	101848698	837580	0	+	0.57	(0.515,0.57]	chr2	93964	39	INTRON	INTRON	MAP4K4	ENSG00000071054.17	ENST00000324219.9:ENST00000350878.9:ENST00000425019.6:ENST00000625522.3:ENST00000413150.6:ENST00000634702.1:ENST00000456652.5:ENST00000347699.8:ENST00000417294.5:ENST00000627726.3:ENST00000476609.1:ENST00000421882.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	33	2	1.88259	2.9839849999999997	4.08538	0.0253843	0.0251849	0.133519	0.12011
chr11	62671330	62671407	4960536	0	-	0.597403	(0.57,1]	chr11	466659	1	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	LBHD1	ENSG00000162194.13	ENST00000354588.8:ENST00000431002.6:ENST00000532208.5:ENST00000415855.6:ENST00000527679.5:ENST00000524759.1:ENST00000528862.2:ENST00000377954.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	37	2	2.91889	2.983975	3.04906	0.00719009	4.97245e-4	0.0756118	0.0206993
chr3	37288934	37289034	1396216	0	+	0.36	(0.35,0.378]	chr3	146352	3	SS3_PROX	SS3_PROX:INTRON	GOLGA4	ENSG00000144674.17	ENST00000435830.6:ENST00000444882.5:ENST00000356847.8:ENST00000450863.6:ENST00000361924.7:ENST00000429018.5:ENST00000419177.3:ENST00000437131.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	52	2	2.92952	2.98383	3.03814	0.00881187	0.00767003	0.084878	0.075364
chr3	185494691	185494761	1883982	0	-	0.371429	(0.35,0.378]	chr3	188405	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	TMEM41A	ENSG00000163900.11	ENST00000382227.7:ENST00000475480.5:ENST00000421852.6:ENST00000296254.3:ENST00000467061.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	129	2	2.94501	2.983815	3.02262	0.00119456	1.03163e-4	0.0315806	0.00861114
chr21	39346631	39346728	7465680	0	-	0.391753	(0.378,0.408]	chr21	760601	8	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	HMGN1	ENSG00000205581.11	ENST00000492280.5:ENST00000431390.5:ENST00000486741.5:ENST00000380749.10:ENST00000288344.14:ENST00000652622.1:ENST00000436324.5:ENST00000380748.5:ENST00000419378.5:ENST00000489072.5:ENST00000482192.5:ENST00000380747.5:ENST00000485550.5:ENST00000490032.5:ENST00000443046.5:ENST00000464078.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	122	2	2.42026	2.98381	3.54736	0.00213386	4.84094e-5	0.041773	0.00567485
chr2	108536689	108536789	845868	0	+	0.47	(0.44,0.476]	chr2	94661	17	INTRON	INTRON	LIMS1	ENSG00000169756.17	ENST00000695516.1:ENST00000544547.6:ENST00000695517.1	protein_coding	protein_coding	protein_coding	protein_coding	4	91	2	2.59888	2.983715	3.36855	0.00487719	1.94525e-4	0.0640618	0.0127418
chr22	49546669	49546769	7601546	0	-	0.38	(0.378,0.408]	chr22	778566	1051	INTRON	INTRON	MIR3667HG	ENSG00000188511.13	ENST00000414287.5:ENST00000416411.1	lncRNA	lncRNA	lncRNA	lncRNA	6	128	2	2.91352	2.983695	3.05387	4.99779e-4	1.51003e-4	0.0206993	0.0106137
chr5	88274849	88274949	2412121	0	+	0.28	[0,0.28]	chr5	232535	55	EXON_LNCRNA	EXON_LNCRNA:INTRON	TMEM161B-DT	ENSG00000247828.9	ENST00000504922.6:ENST00000661377.2:ENST00000658478.1:ENST00000501869.7:ENST00000688087.1:ENST00000654762.1:ENST00000666577.1:ENST00000658094.1:ENST00000661627.1:ENST00000663476.1:ENST00000669353.1:ENST00000688523.1:ENST00000664546.1:ENST00000688118.1:ENST00000663490.1:ENST00000689901.1:ENST00000653918.1:ENST00000668471.1:ENST00000659093.1:ENST00000504636.2:ENST00000666808.1:ENST00000671394.1:ENST00000662970.2:ENST00000661351.1:ENST00000688398.1:ENST00000660783.1:ENST00000670030.1:ENST00000664462.1:ENST00000659005.2:ENST00000670451.1:ENST00000670873.1:ENST00000501715.6:ENST00000657972.2:ENST00000658611.1:ENST00000692797.1:ENST00000504769.5:ENST00000653898.1:ENST00000667139.1:ENST00000684909.1:ENST00000656152.1:ENST00000659215.1:ENST00000669465.1:ENST00000659938.1:ENST00000507736.2:ENST00000667511.1:ENST00000665926.1:ENST00000513694.2:ENST00000693402.1:ENST00000496733.6:ENST00000510087.6:ENST00000506584.5:ENST00000669796.1:ENST00000512724.5:ENST00000668037.1:ENST00000657617.1:ENST00000686930.1:ENST00000667127.1:ENST00000685962.1	lncRNA	lncRNA	lncRNA	lncRNA	4	112	2	2.78378	2.98368	3.18358	0.00694532	0.00105071	0.0718189	0.0298884
chr1	180057866	180057965	268496	0	+	0.444444	(0.44,0.476]	chr1	31446	30	INTRON	INTRON	CEP350	ENSG00000135837.16	ENST00000367607.8	protein_coding	protein_coding	protein_coding	protein_coding	2	49	2	2.46135	2.983595	3.50584	0.0374637	8.66138e-4	0.140008	0.0266729
chr9	122846543	122846643	4338014	0	-	0.35	(0.32,0.35]	chr9	398679	21	UTR3	UTR3:EXON_MRNA	RC3H2	ENSG00000056586.16	ENST00000357244.7:ENST00000373670.5	protein_coding	protein_coding	protein_coding	protein_coding	2	56	2	2.84569	2.983575	3.12146	0.0121137	0.00630799	0.0962599	0.0687526
chr1	6650169	6650269	368542	0	-	0.54	(0.515,0.57]	chr1	43316	2	SS5_PROX	SS5_PROX:INTRON	DNAJC11	ENSG00000007923.17	ENST00000451196.5:ENST00000377577.10:ENST00000690452.1:ENST00000685129.1:ENST00000472414.2:ENST00000688524.1:ENST00000686243.1:ENST00000690062.1:ENST00000689474.1:ENST00000294401.11:ENST00000426784.1:ENST00000473993.5:ENST00000685485.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	44	2	2.56306	2.98347	3.40388	0.0247751	0.00142538	0.131869	0.0340865
chr1	167969759	167969858	248823	0	+	0.414141	(0.408,0.44]	chr1	29558	1	INTRON	INTRON	DCAF6	ENSG00000143164.16	ENST00000450548.5:ENST00000470919.5:ENST00000432587.6:ENST00000367843.7:ENST00000470721.5:ENST00000367840.4:ENST00000312263.10:ENST00000455334.5:ENST00000491067.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	48	2	2.6542	2.983385	3.31257	0.0227514	0.00198621	0.117618	0.0411469
chr22	32482221	32482319	7507794	0	+	0.438776	(0.408,0.44]	chr22	766228	26	INTRON	INTRON	FBXO7	ENSG00000100225.18	ENST00000420700.5:ENST00000425028.5:ENST00000266087.12:ENST00000492535.1:ENST00000452138.3:ENST00000397426.5:ENST00000444207.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	48	2	2.6542	2.983385	3.31257	0.0227514	0.00198621	0.117618	0.0411469
chr1	213146574	213146674	311660	0	+	0.51	(0.476,0.515]	chr1	35945	163	INTRON	INTRON	RPS6KC1	ENSG00000136643.12	ENST00000615329.4:ENST00000543354.5:ENST00000614059.4:ENST00000543470.5:ENST00000366960.8:ENST00000366959.4:ENST00000490299.5:ENST00000468069.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	64	2	2.96824	2.9833800000000004	2.99852	0.0077575	9.98194e-4	0.0757402	0.0290732
chr21	10342315	10342415	7427445	0	-	0.64	(0.57,1]	chr21	757682	3	SS5_PROX	SS5_PROX:INTRON	ENSG00000277693	ENSG00000277693.2	ENST00000622592.1:ENST00000616952.1:ENST00000667012.1	lncRNA	lncRNA	lncRNA	lncRNA	5	54	2	2.71391	2.983205	3.2525	6.82348e-4	1.55446e-4	0.0239168	0.0106835
chr16	88949716	88949815	6541024	0	-	0.545455	(0.515,0.57]	chr16	634104	80	INTRON	INTRON	CBFA2T3	ENSG00000129993.15	ENST00000268679.9:ENST00000563640.1:ENST00000570046.1	protein_coding	protein_coding	protein_coding	protein_coding	3	55	2	2.87626	2.9831399999999997	3.09002	0.00491099	0.00136224	0.0609494	0.0339121
chr2	58194872	58194972	1126278	0	-	0.28	[0,0.28]	chr2	120916	2	INTRON	INTRON	FANCL	ENSG00000115392.13	ENST00000696400.1:ENST00000403295.8:ENST00000696492.1:ENST00000427708.7:ENST00000696314.1:ENST00000696315.1:ENST00000696454.1:ENST00000696508.1:ENST00000696548.1:ENST00000696542.1:ENST00000696432.1:ENST00000696319.1:ENST00000403676.6:ENST00000696433.1:ENST00000696434.1:ENST00000696499.1:ENST00000696564.1:ENST00000402135.8:ENST00000696546.1:ENST00000233741.9:ENST00000696316.1:ENST00000696378.1:ENST00000696435.1:ENST00000696493.1:ENST00000696543.1:ENST00000696544.1:ENST00000696545.1:ENST00000696565.1:ENST00000696620.1:ENST00000696621.1:ENST00000696635.1:ENST00000696364.1:ENST00000696634.1:ENST00000696317.1:ENST00000696622.1:ENST00000696467.1:ENST00000696547.1:ENST00000449070.6:ENST00000696305.1:ENST00000417361.2:ENST00000696338.1:ENST00000696361.1:ENST00000696318.1:ENST00000696371.1:ENST00000696409.1:ENST00000696410.1:ENST00000696455.1:ENST00000696468.1:ENST00000696527.1:ENST00000696567.1:ENST00000696324.1:ENST00000696566.1:ENST00000696623.1:ENST00000446381.6:ENST00000696469.1:ENST00000696624.1:ENST00000696411.1:ENST00000696475.1:ENST00000470506.2:ENST00000696358.1:ENST00000696373.1:ENST00000696394.1:ENST00000696320.1:ENST00000696339.1:ENST00000696395.1:ENST00000696341.1:ENST00000696340.1:ENST00000696374.1:ENST00000696396.1:ENST00000696342.1:ENST00000696325.1:ENST00000696399.1:ENST00000696398.1:ENST00000696306.1:ENST00000696397.1:ENST00000696360.1:ENST00000696344.1:ENST00000696343.1:ENST00000696637.1:ENST00000696362.1:ENST00000696528.1:ENST00000696497.1:ENST00000696326.1:ENST00000696638.1:ENST00000696625.1:ENST00000696510.1:ENST00000696438.1:ENST00000696496.1:ENST00000696509.1:ENST00000696569.1:ENST00000696457.1:ENST00000696458.1:ENST00000696473.1:ENST00000696495.1:ENST00000696415.1:ENST00000696472.1:ENST00000696494.1:ENST00000696363.1:ENST00000696414.1:ENST00000696459.1:ENST00000696498.1:ENST00000696416.1:ENST00000696530.1:ENST00000696460.1:ENST00000696570.1:ENST00000696531.1:ENST00000696307.1:ENST00000696401.1:ENST00000696345.1:ENST00000696377.1:ENST00000696417.1:ENST00000696594.1:ENST00000696595.1:ENST00000696379.1:ENST00000696346.1:ENST00000696380.1:ENST00000696347.1:ENST00000696461.1:ENST00000696596.1:ENST00000696549.1:ENST00000696597.1:ENST00000696550.1:ENST00000696598.1:ENST00000696321.1:ENST00000696476.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	91	2	2.62985	2.98303	3.33621	0.00581422	0.00427056	0.068681	0.0573912
chr4	56432456	56432555	2151628	0	-	0.484848	(0.476,0.515]	chr4	211799	243	INTRON	INTRON	PPAT	ENSG00000128059.8	ENST00000264220.6:ENST00000510643.5:ENST00000507724.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	32	2	1.86492	2.983025	4.10113	0.0550347	0.0226984	0.165463	0.124921
chr11	67139227	67139326	4812646	0	+	0.424242	(0.408,0.44]	chr11	448106	68	INTRON	INTRON	KDM2A	ENSG00000173120.15	ENST00000529006.7:ENST00000398645.6:ENST00000532436.5:ENST00000527157.1:ENST00000308783.9	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	48	2	2.96007	2.98301	3.00595	0.00781452	0.00753901	0.0773151	0.0759016
chr14	45223517	45223617	5884990	0	-	0.44	(0.408,0.44]	chr14	558371	2	SS5_PROX	SS5_PROX:INTRON	MIS18BP1	ENSG00000129534.14	ENST00000310806.9:ENST00000469020.5:ENST00000554093.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	48	2	2.96007	2.98301	3.00595	0.00781452	0.00753901	0.0773151	0.0759016
chr16	69571745	69571845	6380067	0	+	0.41	(0.408,0.44]	chr16	613167	28	INTRON	INTRON	NFAT5	ENSG00000102908.22	ENST00000426654.6:ENST00000349945.7:ENST00000354436.6:ENST00000627621.3:ENST00000650987.1:ENST00000567990.5:ENST00000567239.5:ENST00000393742.7:ENST00000565301.2:ENST00000566899.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	48	2	2.96007	2.98301	3.00595	0.00781452	0.00753901	0.0773151	0.0759016
chr11	86004150	86004250	5014180	0	-	0.26	[0,0.28]	chr11	472970	3	INTRON	INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000630913.2:ENST00000528398.5:ENST00000356360.9:ENST00000534412.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	111	2	2.71942	2.983005	3.24659	0.00570201	0.00139528	0.0656459	0.0341592
chr7	148820770	148820869	3670117	0	-	0.232323	[0,0.28]	chr7	340579	12	EXON_MRNA	EXON_MRNA:INTRON	EZH2	ENSG00000106462.12	ENST00000683292.1:ENST00000320356.7:ENST00000492143.5:ENST00000478654.5:ENST00000350995.6:ENST00000460911.5:ENST00000683744.1:ENST00000684510.1:ENST00000682317.1:ENST00000682263.1:ENST00000684300.1:ENST00000476773.5:ENST00000483967.5:ENST00000498186.5:ENST00000483012.1:ENST00000682401.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	111	2	2.71942	2.983005	3.24659	0.00570201	0.00139528	0.0656459	0.0341592
chr4	82898654	82898747	2180189	0	-	0.430108	(0.408,0.44]	chr4	214424	2	INTRON	INTRON	SEC31A:THAP9-AS1	ENSG00000138674.17:ENSG00000251022.6	ENST00000355196.6:ENST00000503210.5:ENST00000507676.5:ENST00000506495.5:ENST00000507051.1:ENST00000504520.6:ENST00000504792.6:ENST00000512932.5:ENST00000511271.5:ENST00000508772.5:ENST00000513581.5:ENST00000504718.5:ENST00000505028.5:ENST00000507660.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	10	129	2	1.80556	2.982995	4.16043	0.00424264	5.66588e-5	0.0595557	0.00655354
chr20	38423471	38423566	7342185	0	-	0.305263	(0.28,0.32]	chr20	748300	14	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	SNHG17	ENSG00000196756.14	ENST00000654008.2:ENST00000658076.1:ENST00000662982.2:ENST00000456953.7:ENST00000654183.2:ENST00000663540.2:ENST00000651115.2:ENST00000667835.1:ENST00000660885.2:ENST00000662213.1:ENST00000665233.2:ENST00000666268.2:ENST00000665735.1:ENST00000660558.2:ENST00000691280.1:ENST00000658488.2:ENST00000688336.1:ENST00000668054.2:ENST00000690441.1:ENST00000655520.2:ENST00000687490.1:ENST00000664626.1:ENST00000658051.1:ENST00000668042.1:ENST00000686971.1:ENST00000663187.1:ENST00000669114.1:ENST00000653343.1:ENST00000666225.1:ENST00000659186.1:ENST00000671309.1:ENST00000669405.1:ENST00000666806.1:ENST00000657665.1:ENST00000657868.1:ENST00000663534.1:ENST00000658141.1:ENST00000689917.1:ENST00000664073.2:ENST00000653697.1:ENST00000656320.1:ENST00000686814.1:ENST00000417578.7:ENST00000654853.1:ENST00000665440.1:ENST00000659102.1:ENST00000436764.7:ENST00000668482.2:ENST00000671249.1:ENST00000655692.1:ENST00000662568.1:ENST00000659255.1:ENST00000665693.1:ENST00000693250.1:ENST00000691368.1:ENST00000693227.1:ENST00000690361.1:ENST00000670051.1:ENST00000667912.1:ENST00000693665.1:ENST00000665181.1:ENST00000687532.1:ENST00000691386.1:ENST00000693684.1:ENST00000666331.1:ENST00000669480.1:ENST00000658905.1:ENST00000661252.1:ENST00000669137.1:ENST00000688133.1:ENST00000689414.1:ENST00000691314.1:ENST00000669033.1:ENST00000686145.1:ENST00000653938.1:ENST00000663784.1:ENST00000665003.1:ENST00000659400.1:ENST00000653753.1:ENST00000449469.5:ENST00000654389.1:ENST00000657429.1:ENST00000667412.1:ENST00000654092.1:ENST00000653277.1:ENST00000663955.1:ENST00000656023.1:ENST00000692262.1:ENST00000414142.5:ENST00000659753.1:ENST00000670958.1:ENST00000657216.2:ENST00000664636.1:ENST00000657843.1:ENST00000660189.1:ENST00000660064.1:ENST00000655198.1:ENST00000662572.1:ENST00000423536.6:ENST00000658455.1:ENST00000666419.1:ENST00000413755.5	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	4	108	2	2.79541	2.982925	3.17044	0.00376367	5.14622e-4	0.0539127	0.0203753
chr6	4051064	4051162	2790004	0	+	0.520408	(0.515,0.57]	chr6	263529	8	INTRON	INTRON	PRPF4B	ENSG00000112739.17	ENST00000480058.5:ENST00000337659.11:ENST00000481109.5:ENST00000463634.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	34	2	1.56681	2.982905	4.399	0.064862	0.00708863	0.179394	0.0754923
chr7	133057355	133057455	3645642	0	-	0.47	(0.44,0.476]	chr7	338880	54	INTRON	INTRON	CHCHD3	ENSG00000106554.13	ENST00000262570.10:ENST00000448878.6:ENST00000423635.5:ENST00000481152.2:ENST00000457942.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	49	2	2.74372	2.9828200000000002	3.22192	0.0153007	0.00360821	0.108569	0.0533855
chr5	613339	613438	2313385	0	+	0.50505	(0.476,0.515]	chr5	223834	5	INTRON	INTRON	CEP72	ENSG00000112877.8	ENST00000264935.6	protein_coding	protein_coding	protein_coding	protein_coding	9	124	2	1.76545	2.9827899999999996	4.20013	0.0076972	2.43832e-5	0.0754719	0.00386122
chr1	24656526	24656626	45883	0	+	0.41	(0.408,0.44]	chr1	5716	10	INTRON	INTRON	SRRM1	ENSG00000133226.18	ENST00000374389.8:ENST00000323848.14:ENST00000479034.5:ENST00000596378.1:ENST00000496882.5:ENST00000461768.5:ENST00000485541.1:ENST00000488317.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	66	2	2.84077	2.982675	3.12458	0.0132196	4.61817e-4	0.0940535	0.0194611
chr12	68823938	68824014	5163142	0	+	0.434211	(0.408,0.44]	chr12	488923	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MDM2	ENSG00000135679.27	ENST00000258149.11:ENST00000393412.7:ENST00000311420.13:ENST00000393417.8:ENST00000258148.11:ENST00000539479.6:ENST00000523991.5:ENST00000543323.5:ENST00000393415.7:ENST00000393416.7:ENST00000481186.6:ENST00000545204.2:ENST00000544561.6:ENST00000665020.1:ENST00000666617.1:ENST00000671567.1:ENST00000393410.5:ENST00000496959.5:ENST00000299252.8:ENST00000360430.6:ENST00000517852.5:ENST00000546048.5:ENST00000540352.5:ENST00000542502.5:ENST00000537182.5:ENST00000536089.5:ENST00000393413.7:ENST00000350057.9:ENST00000348801.7:ENST00000478070.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	66	2	2.84077	2.982675	3.12458	0.0132196	4.61817e-4	0.0940535	0.0194611
chr2	241325766	241325866	1053714	0	+	0.33	(0.32,0.35]	chr2	112216	4	SS3_PROX	SS3_PROX:INTRON	SEPTIN2	ENSG00000168385.18	ENST00000391973.6:ENST00000428282.5:ENST00000492978.5:ENST00000360051.7:ENST00000407017.5:ENST00000445030.5:ENST00000428524.5:ENST00000469434.5:ENST00000616972.4:ENST00000495463.5:ENST00000482304.5:ENST00000475474.5:ENST00000401990.5:ENST00000469175.5:ENST00000407971.5:ENST00000457335.5:ENST00000436795.5:ENST00000494824.5:ENST00000411484.5:ENST00000462147.5:ENST00000434955.5:ENST00000466211.5:ENST00000391971.7:ENST00000402092.6:ENST00000484740.1:ENST00000473479.5:ENST00000464128.5:ENST00000441533.5:ENST00000467971.5:ENST00000425899.5:ENST00000443492.5:ENST00000437066.5:ENST00000429791.5:ENST00000420786.5:ENST00000475823.5:ENST00000449239.5:ENST00000366210.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	92	2	1.77409	2.982635	4.19118	0.0414296	3.63425e-5	0.146067	0.00482856
chr11	46626216	46626315	4784757	0	+	0.535354	(0.515,0.57]	chr11	442584	4	INTRON	INTRON	ATG13	ENSG00000175224.17	ENST00000580238.5:ENST00000581416.5:ENST00000529655.5:ENST00000526715.5:ENST00000533325.5:ENST00000683050.1:ENST00000583249.5:ENST00000581438.5:ENST00000526508.5:ENST00000530500.5:ENST00000577256.5:ENST00000578626.5:ENST00000524625.5:ENST00000530942.1:ENST00000534610.5:ENST00000582547.5:ENST00000359513.8:ENST00000528494.5:ENST00000395549.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	43	2	2.65834	2.982495	3.30665	0.0187418	0.00213226	0.117523	0.041756
chr12	50115497	50115597	5135736	0	+	0.52	(0.515,0.57]	chr12	484313	22	INTRON	INTRON	COX14:ENSG00000272368	ENSG00000178449.9:ENSG00000272368.2	ENST00000317943.6:ENST00000548468.2:ENST00000550654.1:ENST00000550487.6:ENST00000548985.1:ENST00000552815.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	2	43	2	2.65834	2.982495	3.30665	0.0187418	0.00213226	0.117523	0.041756
chr4	139155983	139156083	2247135	0	-	0.28	[0,0.28]	chr4	219601	161	INTRON	INTRON	ELF2	ENSG00000109381.21	ENST00000394235.6:ENST00000686138.1:ENST00000511184.5:ENST00000511006.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	46	2	1.66929	2.982325	4.29536	0.0590175	0.0537506	0.180803	0.167915
chr5	172768190	172768285	2772748	0	-	0.336842	(0.32,0.35]	chr5	260976	2	UTR3	UTR3:EXON_MRNA	DUSP1	ENSG00000120129.6	ENST00000239223.4	protein_coding	protein_coding	protein_coding	protein_coding	3	84	2	2.84569	2.98222	3.11875	0.0121137	8.95981e-4	0.0962599	0.027646
chr10	125125753	125125853	4713991	0	-	0.54	(0.515,0.57]	chr10	434919	25	INTRON	INTRON	CTBP2	ENSG00000175029.17	ENST00000337195.9:ENST00000411419.6:ENST00000494626.6:ENST00000531469.5:ENST00000460976.5:ENST00000476817.1:ENST00000530884.1:ENST00000530930.1:ENST00000467395.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	73	2	2.763	2.982205	3.20141	0.00257143	2.65803e-4	0.045134	0.0144243
chr13	19705461	19705561	5552163	0	-	0.36	(0.35,0.378]	chr13	530685	4	SS5_PROX	SS5_PROX:INTRON	PSPC1	ENSG00000121390.19	ENST00000471658.5:ENST00000492741.5:ENST00000635562.1:ENST00000338910.9:ENST00000619300.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	142	2	2.69972	2.98218	3.26464	4.0384e-4	1.93114e-4	0.0185763	0.012131
chr14	73319185	73319283	5917906	0	-	0.520408	(0.515,0.57]	chr14	562229	24	INTRON	INTRON	NUMB	ENSG00000133961.21	ENST00000554546.5:ENST00000535282.5:ENST00000359560.7:ENST00000355058.7:ENST00000544991.7:ENST00000555238.6:ENST00000557597.5:ENST00000356296.8:ENST00000555394.5:ENST00000559312.5:ENST00000560335.5:ENST00000555738.6:ENST00000554521.6:ENST00000555859.5:ENST00000554394.5:ENST00000555307.5:ENST00000554315.5:ENST00000555987.5:ENST00000556112.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	88	2	2.76279	2.9821	3.20141	7.25448e-4	2.65803e-4	0.0247646	0.0144243
chr16	21490209	21490309	6461255	0	-	0.6	(0.57,1]	chr16	623371	22	INTRON	INTRON	SMG1P3	ENSG00000180747.15	ENST00000522480.5:ENST00000522841.6:ENST00000437413.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	3	35	2	2.33295	2.982095	3.63124	0.0122896	2.87208e-4	0.091087	0.0150568
chr3	194454324	194454392	1890866	0	-	0.367647	(0.35,0.378]	chr3	189207	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ATP13A3	ENSG00000133657.17	ENST00000687055.1:ENST00000645538.1:ENST00000645319.2:ENST00000690810.1:ENST00000642744.2:ENST00000439040.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	39	2	1.87586	2.9820100000000003	4.08816	0.046021	0.0268864	0.149888	0.135275
chr2	127753839	127753939	1225301	0	-	0.29	(0.28,0.32]	chr2	130486	154	INTRON	INTRON	WDR33	ENSG00000136709.12	ENST00000322313.9:ENST00000436787.5:ENST00000393006.5	protein_coding	protein_coding	protein_coding	protein_coding	2	60	2	2.57195	2.9819950000000004	3.39204	0.0331711	0.00188405	0.133994	0.0402736
chr5	65927805	65927905	2370856	0	+	0.36	(0.35,0.378]	chr5	228472	6	INTRON	INTRON	ERBIN	ENSG00000112851.15	ENST00000380943.6:ENST00000507490.1:ENST00000416865.6:ENST00000380935.5:ENST00000284037.10:ENST00000380938.6:ENST00000511297.5:ENST00000506030.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	105	2	2.09348	2.9819500000000003	3.87042	0.00418185	2.9524e-4	0.0591344	0.0159581
chr19	5096064	5096163	7004701	0	+	0.484848	(0.476,0.515]	chr19	694855	132	INTRON	INTRON	KDM4B	ENSG00000127663.15	ENST00000159111.9:ENST00000611640.4:ENST00000381759.8:ENST00000536461.5:ENST00000589104.5:ENST00000588961.1:ENST00000588361.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	102	2	2.44441	2.98195	3.51949	0.0036718	5.51244e-5	0.0535094	0.00608953
chr19	55664640	55664739	7101630	0	+	0.525253	(0.515,0.57]	chr19	712540	5	INTRON	INTRON	U2AF2	ENSG00000063244.13	ENST00000450554.6:ENST00000308924.9:ENST00000592874.1:ENST00000590551.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	84	2	1.92814	2.98188	4.03562	0.00827421	4.64806e-5	0.0774402	0.00555027
chr21	46322044	46322138	7471673	0	-	0.5	(0.476,0.515]	chr21	761762	14	INTRON	INTRON	C21orf58	ENSG00000160298.18	ENST00000397682.7:ENST00000291691.12:ENST00000397680.5:ENST00000445935.5:ENST00000475776.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	104	2	2.5238	2.98187	3.43994	0.00218334	1.29236e-4	0.0435144	0.0103343
chr15	92932759	92932858	6104022	0	+	0.50505	(0.476,0.515]	chr15	581428	33	INTRON	INTRON	ENSG00000279765:CHD2	ENSG00000279765.3:ENSG00000173575.22	ENST00000630790.1:ENST00000626874.2:ENST00000394196.9:ENST00000635856.1:ENST00000420239.7:ENST00000628375.2:ENST00000625990.3:ENST00000626782.2:ENST00000629136.1:ENST00000637572.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	105	2	2.09868	2.9818499999999997	3.86502	0.00250696	2.2858e-4	0.0464713	0.0138641
chr2	151411338	151411438	893219	0	+	0.3	(0.28,0.32]	chr2	98876	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	RIF1	ENSG00000080345.18	ENST00000453091.6:ENST00000428287.6:ENST00000494333.1:ENST00000444746.7:ENST00000243326.9:ENST00000414861.6:ENST00000430328.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	209	2	2.42351	2.98172	3.53993	3.20052e-4	1.65959e-4	0.0159645	0.0118079
chr4	82927101	82927201	2180394	0	-	0.36	(0.35,0.378]	chr4	214449	26	UTR3	UTR3:EXON_MRNA:INTRON	LIN54	ENSG00000189308.11	ENST00000505905.1:ENST00000340417.8:ENST00000510877.5:ENST00000446851.6:ENST00000442461.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	83	2	2.32061	2.981565	3.64252	0.00545884	8.02255e-4	0.0669938	0.0262199
chr1	31295323	31295421	413279	0	-	0.357143	(0.35,0.378]	chr1	49815	16	INTRON	INTRON	SNRNP40	ENSG00000060688.13	ENST00000263694.9:ENST00000463988.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	25	2	2.1617	2.981495	3.80129	0.0771502	0.0504034	0.196285	0.17488
chr2	69858610	69858709	805046	0	+	0.363636	(0.35,0.378]	chr2	89835	33	INTRON	INTRON	GMCL1	ENSG00000087338.5	ENST00000282570.4	protein_coding	protein_coding	protein_coding	protein_coding	1	25	2	2.1617	2.981495	3.80129	0.0771502	0.0504034	0.196285	0.17488
chr22	35220303	35220403	7580962	0	-	0.37	(0.35,0.378]	chr22	775774	249	INTRON	INTRON	LINC01399	ENSG00000233080.3	ENST00000423311.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	1	25	2	2.1617	2.981495	3.80129	0.0771502	0.0504034	0.196285	0.17488
chr3	15784050	15784149	1623682	0	-	0.373737	(0.35,0.378]	chr3	168013	20	INTRON	INTRON	ANKRD28	ENSG00000206560.12	ENST00000399451.6:ENST00000624145.3:ENST00000683139.1:ENST00000412318.5:ENST00000497037.5:ENST00000451422.1:ENST00000498524.5:ENST00000439830.5:ENST00000461696.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	25	2	2.1617	2.981495	3.80129	0.0771502	0.0504034	0.196285	0.17488
chr3	52272100	52272199	1698916	0	-	0.363636	(0.35,0.378]	chr3	174719	9	INTRON	INTRON	WDR82	ENSG00000164091.12	ENST00000296490.8:ENST00000469000.5:ENST00000463624.1	protein_coding	protein_coding	protein_coding	protein_coding	1	25	2	2.1617	2.981495	3.80129	0.0771502	0.0504034	0.196285	0.17488
chr3	136683743	136683843	1827775	0	-	0.37	(0.35,0.378]	chr3	183745	524	INTRON	INTRON	STAG1	ENSG00000118007.13	ENST00000383202.7:ENST00000236698.9:ENST00000434713.6:ENST00000483235.5:ENST00000629124.2:ENST00000487065.5:ENST00000480733.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	25	2	2.1617	2.981495	3.80129	0.0771502	0.0504034	0.196285	0.17488
chr11	63697758	63697858	4800076	0	+	0.41	(0.408,0.44]	chr11	444936	156	INTRON	INTRON	RTN3	ENSG00000133318.14	ENST00000341307.6:ENST00000356000.7:ENST00000542238.5:ENST00000538995.1:ENST00000339997.8:ENST00000540798.5:ENST00000537981.5:ENST00000377819.10:ENST00000536011.5:ENST00000543123.1:ENST00000543552.5:ENST00000545432.5:ENST00000338850.5:ENST00000354497.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	35	2	1.6306	2.98149	4.33238	0.0544158	0.0218901	0.182272	0.11491
chr14	101778628	101778728	5818664	0	+	0.43	(0.408,0.44]	chr14	551819	117	INTRON	INTRON	PPP2R5C	ENSG00000078304.20	ENST00000694906.1:ENST00000422945.6:ENST00000554442.5:ENST00000556068.5:ENST00000328724.9:ENST00000554504.1:ENST00000553890.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	35	2	1.6306	2.98149	4.33238	0.0544158	0.0218901	0.182272	0.11491
chr16	69593328	69593428	6380283	0	+	0.44	(0.408,0.44]	chr16	613167	244	INTRON	INTRON	NFAT5	ENSG00000102908.22	ENST00000426654.6:ENST00000349945.7:ENST00000354436.6:ENST00000627621.3:ENST00000650987.1:ENST00000567990.5:ENST00000567239.5:ENST00000393742.7:ENST00000565301.2:ENST00000566899.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	35	2	1.6306	2.98149	4.33238	0.0544158	0.0218901	0.182272	0.11491
chr19	46733715	46733815	7195135	0	-	0.43	(0.408,0.44]	chr19	728920	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	STRN4	ENSG00000090372.15	ENST00000391910.7:ENST00000263280.11:ENST00000539396.5:ENST00000600358.7:ENST00000435164.6:ENST00000602397.5:ENST00000594704.5:ENST00000593979.6:ENST00000597063.6:ENST00000597021.6:ENST00000596012.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	35	2	1.6306	2.98149	4.33238	0.0544158	0.0218901	0.182272	0.11491
chr3	152391570	152391670	1536217	0	+	0.44	(0.408,0.44]	chr3	160003	560	INTRON	INTRON	MBNL1	ENSG00000152601.18	ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000495875.6:ENST00000324210.10:ENST00000493459.5:ENST00000459747.1:ENST00000460591.5:ENST00000545754.5:ENST00000357472.7:ENST00000324196.9:ENST00000498502.5:ENST00000463374.5:ENST00000485910.5:ENST00000465907.6:ENST00000492948.5:ENST00000485509.5:ENST00000464596.5	protein_coding	protein_coding	protein_coding	protein_coding	3	35	2	1.6306	2.98149	4.33238	0.0544158	0.0218901	0.182272	0.11491
chr17	81627042	81627141	6849509	0	-	0.494949	(0.476,0.515]	chr17	678237	44	INTRON	INTRON	NPLOC4	ENSG00000182446.14	ENST00000331134.11:ENST00000374747.9:ENST00000574897.5:ENST00000625705.1:ENST00000570300.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	63	2	2.81076	2.98139	3.15202	0.00455841	0.00203568	0.0595107	0.0417667
chr17	67231565	67231665	6825693	0	-	0.39	(0.378,0.408]	chr17	674543	124	INTRON	INTRON	HELZ	ENSG00000198265.12	ENST00000358691.10:ENST00000579953.5:ENST00000580168.5:ENST00000417253.7:ENST00000580662.5:ENST00000584641.5:ENST00000581159.5:ENST00000580963.1:ENST00000579861.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:non_stop_decay:nonsense_mediated_decay:processed_transcript	2	50	2	2.53503	2.981265	3.4275	0.0319942	0.00126053	0.13174	0.03295
chr3	138753756	138753856	1830685	0	-	0.4	(0.378,0.408]	chr3	184037	106	INTRON	INTRON	PIK3CB	ENSG00000051382.9	ENST00000674063.1:ENST00000289153.6:ENST00000477593.5:ENST00000462898.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	50	2	2.53503	2.981265	3.4275	0.0319942	0.00126053	0.13174	0.03295
chr7	99453779	99453872	3362009	0	+	0.612903	(0.57,1]	chr7	314010	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CPSF4	ENSG00000160917.15	ENST00000436336.6:ENST00000292476.10:ENST00000451876.5:ENST00000441580.5:ENST00000452047.1:ENST00000471455.1:ENST00000440514.1:ENST00000469897.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	65	2	2.81549	2.981265	3.14704	3.90081e-4	4.92991e-5	0.0177751	0.00608708
chr8	22464954	22465054	3713558	0	+	0.48	(0.476,0.515]	chr8	344875	231	INTRON	INTRON	PPP3CC	ENSG00000120910.15	ENST00000518852.5:ENST00000240139.10:ENST00000289963.12:ENST00000397775.7:ENST00000522000.1	protein_coding	protein_coding	protein_coding	protein_coding	3	63	2	2.58615	2.981235	3.37632	0.00515536	0.00195267	0.0650394	0.0400465
chr15	92890805	92890905	6103587	0	+	0.5	(0.476,0.515]	chr15	581369	21	INTRON	INTRON	CHASERR:ENSG00000279765	ENSG00000272888.8:ENSG00000279765.3	ENST00000653163.1:ENST00000557682.6:ENST00000556895.5:ENST00000554894.5:ENST00000629685.2:ENST00000554133.5:ENST00000630790.1:ENST00000555520.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	7	106	2	1.68084	2.98119	4.28154	0.0172143	1.50554e-5	0.104099	0.00292449
chr2	200859179	200859279	1310057	0	-	0.29	(0.28,0.32]	chr2	137037	1	SS5_PROX	SS5_PROX:INTRON	CLK1	ENSG00000013441.17	ENST00000321356.9:ENST00000461981.5:ENST00000473565.5:ENST00000432425.5:ENST00000409403.6:ENST00000434813.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	154	2	1.95369	2.981095	4.0085	0.00343573	2.40059e-4	0.0539802	0.0142303
chr1	108702249	108702346	178234	0	+	0.505155	(0.476,0.515]	chr1	19368	24	UTR3	UTR3:EXON_MRNA	PRPF38B	ENSG00000134186.12	ENST00000370025.9	protein_coding	protein_coding	protein_coding	protein_coding	3	40	2	1.7425	2.98107	4.21964	0.0417334	0.0167715	0.147007	0.110511
chr1	150221261	150221355	550661	0	-	0.531915	(0.515,0.57]	chr1	64669	1	INTRON	INTRON	ANP32E	ENSG00000143401.15	ENST00000583931.6:ENST00000629042.2:ENST00000616917.4:ENST00000436748.6:ENST00000534437.1:ENST00000369114.9:ENST00000369115.3:ENST00000533654.5	protein_coding	protein_coding	protein_coding	protein_coding	2	28	2	1.79136	2.980865	4.17037	0.0638444	0.0139194	0.177811	0.10247
chr1	246143380	246143480	677066	0	-	0.54	(0.515,0.57]	chr1	79721	471	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000391836.3:ENST00000453676.5:ENST00000462422.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	28	2	1.79136	2.980865	4.17037	0.0638444	0.0139194	0.177811	0.10247
chr4	99087209	99087307	2208718	0	-	0.540816	(0.515,0.57]	chr4	216250	12	INTRON	INTRON	ADH5	ENSG00000197894.12	ENST00000296412.14:ENST00000626055.2:ENST00000512659.5:ENST00000508511.5:ENST00000502590.5:ENST00000505652.1:ENST00000508146.5:ENST00000507102.5:ENST00000502386.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	41	2	2.83501	2.98082	3.12663	0.0117686	0.00374498	0.0894475	0.0562234
chr7	128847405	128847500	3409269	0	+	0.347368	(0.32,0.35]	chr7	318666	1	SS3_PROX	SS3_PROX:INTRON	FLNC	ENSG00000128591.16	ENST00000325888.13:ENST00000346177.6	protein_coding	protein_coding	protein_coding	protein_coding	5	51	2	1.42176	2.98082	4.53988	0.0511006	0.0202178	0.176696	0.109913
chr5	54070831	54070930	2618514	0	-	0.383838	(0.378,0.408]	chr5	248837	227	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	146	2	2.68426	2.980805	3.27735	6.27248e-4	4.08558e-5	0.0230267	0.00519615
chr22	21502662	21502762	7560117	0	-	0.52	(0.515,0.57]	chr22	773318	102	INTRON	INTRON	PI4KAP2	ENSG00000183506.17	ENST00000450651.5:ENST00000467443.5:ENST00000479693.1:ENST00000476537.1:ENST00000491562.5	transcribed_unitary_pseudogene	retained_intron	transcribed_unitary_pseudogene	retained_intron:processed_transcript	2	41	2	2.90311	2.98075	3.05839	0.0094233	0.00485936	0.0817766	0.0640618
chr8	42000344	42000444	3940789	0	-	0.52	(0.515,0.57]	chr8	361223	124	INTRON	INTRON	KAT6A	ENSG00000083168.11	ENST00000406337.6:ENST00000265713.8:ENST00000396930.4:ENST00000648335.1:ENST00000649827.1:ENST00000485568.5:ENST00000647809.1:ENST00000648030.1:ENST00000650356.1:ENST00000470574.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	41	2	2.90311	2.98075	3.05839	0.0094233	0.00485936	0.0817766	0.0640618
chr12	110338386	110338484	5226681	0	+	0.408163	(0.378,0.408]	chr12	495282	39	INTRON	INTRON	ATP2A2	ENSG00000174437.18	ENST00000308664.10:ENST00000539276.7:ENST00000377685.9:ENST00000548169.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	50	2	2.85854	2.98064	3.10274	0.0107837	0.00586642	0.0920575	0.0668095
chr16	4471213	4471313	6437587	0	-	0.4	(0.378,0.408]	chr16	619903	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	NMRAL1	ENSG00000153406.14	ENST00000574733.5:ENST00000283429.11:ENST00000404295.7:ENST00000574425.5:ENST00000571291.5:ENST00000573520.5:ENST00000573571.1:ENST00000575002.5:ENST00000575557.5:ENST00000576935.5:ENST00000575995.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	50	2	2.85854	2.98064	3.10274	0.0107837	0.00586642	0.0920575	0.0668095
chr2	61507062	61507160	1130904	0	-	0.438776	(0.408,0.44]	chr2	121597	44	INTRON	INTRON	XPO1	ENSG00000082898.19	ENST00000677110.1:ENST00000676553.1:ENST00000677556.1:ENST00000677814.1:ENST00000676771.1:ENST00000677803.1:ENST00000677239.1:ENST00000678790.1:ENST00000677928.1:ENST00000678182.1:ENST00000677150.1:ENST00000678172.1:ENST00000678360.1:ENST00000678081.1:ENST00000676889.1:ENST00000676783.1:ENST00000679035.1:ENST00000677422.1:ENST00000677417.1:ENST00000677813.1:ENST00000676999.1:ENST00000676667.1:ENST00000678263.1:ENST00000678877.1:ENST00000677933.1:ENST00000680228.1:ENST00000677289.1:ENST00000677190.1:ENST00000401558.7:ENST00000428210.5:ENST00000677290.1:ENST00000677850.1:ENST00000451765.6:ENST00000676789.1:ENST00000678741.1:ENST00000404992.6:ENST00000406957.5:ENST00000443240.5:ENST00000476585.5:ENST00000468259.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	157	2	2.54615	2.980595	3.41504	6.07458e-4	1.62579e-5	0.0226131	0.00304426
chr5	134219972	134220072	2726631	0	-	0.39	(0.378,0.408]	chr5	256558	135	INTRON	INTRON	PPP2CA	ENSG00000113575.10	ENST00000481195.6:ENST00000522385.1:ENST00000523082.1:ENST00000231504.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	90	2	2.22335	2.9805900000000003	3.73783	0.00388279	4.8181e-4	0.0567196	0.0203411
chr5	65956479	65956579	2371143	0	+	0.45	(0.44,0.476]	chr5	228472	293	INTRON	INTRON	ERBIN	ENSG00000112851.15	ENST00000380943.6:ENST00000507490.1:ENST00000416865.6:ENST00000380935.5:ENST00000284037.10:ENST00000380938.6:ENST00000511297.5:ENST00000506030.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	97	2	2.30982	2.980585	3.65135	0.00140739	6.34922e-4	0.0344267	0.023163
chr6	15498060	15498158	2825473	0	+	0.510204	(0.476,0.515]	chr6	265230	5	INTRON	INTRON	JARID2	ENSG00000008083.14	ENST00000341776.7:ENST00000397311.4	protein_coding	protein_coding	protein_coding	protein_coding	3	64	2	2.21677	2.98055	3.74433	0.0207026	2.85053e-4	0.110999	0.0150568
chr6	43628288	43628388	3097594	0	-	0.45	(0.44,0.476]	chr6	290203	1	SS5_PROX	SS5_PROX:INTRON	GTPBP2	ENSG00000172432.19	ENST00000307126.10:ENST00000442748.5:ENST00000452781.1	protein_coding	protein_coding	protein_coding	protein_coding	9	179	2	2.48203	2.980485	3.47894	8.11374e-4	2.70881e-6	0.0263656	0.00105261
chr1	3737296	3737395	363741	0	-	0.59596	(0.57,1]	chr1	42584	18	EXON_LNCRNA	EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TP73-AS1	ENSG00000227372.12	ENST00000648526.1:ENST00000418088.6:ENST00000648432.1:ENST00000648479.1:ENST00000452079.5:ENST00000650545.1:ENST00000419973.1:ENST00000647831.1:ENST00000648600.1:ENST00000423764.6:ENST00000647817.1:ENST00000649123.1:ENST00000648270.1:ENST00000650039.1:ENST00000650037.1:ENST00000649468.1	transcribed_unitary_pseudogene	processed_transcript	transcribed_unitary_pseudogene	processed_transcript	5	54	2	2.55379	2.980425	3.40706	0.0015786	5.92509e-5	0.0362091	0.00631599
chr11	67277548	67277648	4813983	0	+	0.63	(0.57,1]	chr11	448245	2	SS5_PROX	SS5_PROX:INTRON	GRK2	ENSG00000173020.11	ENST00000308595.10:ENST00000526285.1:ENST00000530291.5:ENST00000416281.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	58	2	2.58733	2.9804000000000004	3.37347	0.00454222	9.61542e-6	0.0595107	0.00224473
chr1	17415391	17415489	384737	0	-	0.530612	(0.515,0.57]	chr1	45459	13	INTRON	INTRON	RCC2	ENSG00000179051.14	ENST00000375436.9:ENST00000375433.3	protein_coding	protein_coding	protein_coding	protein_coding	9	146	2	2.42857	2.980305	3.53204	3.71848e-4	8.5982e-6	0.0173669	0.00225139
chr15	68810845	68810945	6214876	0	-	0.48	(0.476,0.515]	chr15	593024	187	INTRON	INTRON	ANP32A	ENSG00000140350.15	ENST00000465139.6:ENST00000409628.6:ENST00000267918.9:ENST00000560303.1:ENST00000495420.5:ENST00000495764.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	47	2	2.8863	2.98026	3.07422	0.0111679	0.00506023	0.0877435	0.0646039
chr16	1859509	1859607	6430227	0	-	0.377551	(0.35,0.378]	chr16	618379	12	INTRON	INTRON	MEIOB	ENSG00000162039.17	ENST00000325962.9:ENST00000470044.5:ENST00000397344.7:ENST00000496541.6:ENST00000460494.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	170	2	2.8723	2.9801900000000003	3.08808	2.35937e-4	6.99232e-5	0.0140941	0.00692586
chr18	183714	183813	6855081	0	+	0.30303	(0.28,0.32]	chr18	679521	30	INTRON	INTRON	USP14	ENSG00000101557.15	ENST00000582707.5:ENST00000400266.7:ENST00000261601.8:ENST00000578942.5:ENST00000383589.6:ENST00000583119.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	81	2	2.18092	2.980095	3.77927	0.0271832	3.56863e-4	0.123904	0.0169148
chr12	103798086	103798186	5401374	0	-	0.4	(0.378,0.408]	chr12	515258	1	SS5_PROX	SS5_PROX:INTRON	NT5DC3	ENSG00000111696.12	ENST00000392876.8:ENST00000465502.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	30	2	1.97143	2.98005	3.98867	0.0507	0.0398704	0.161534	0.156383
chr2	86479784	86479879	823335	0	+	0.4	(0.378,0.408]	chr2	91980	12	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	KDM3A	ENSG00000115548.17	ENST00000409556.5:ENST00000312912.10:ENST00000441719.5:ENST00000409064.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	30	2	1.97143	2.98005	3.98867	0.0507	0.0398704	0.161534	0.156383
chr5	134702278	134702376	2489964	0	+	0.408163	(0.378,0.408]	chr5	237801	39	INTRON	INTRON	SEC24A	ENSG00000113615.13	ENST00000398844.7	protein_coding	protein_coding	protein_coding	protein_coding	2	30	2	1.97143	2.98005	3.98867	0.0507	0.0398704	0.161534	0.156383
chr8	90565488	90565588	3795761	0	+	0.4	(0.378,0.408]	chr8	351838	261	INTRON	INTRON	LINC00534	ENSG00000253394.7	ENST00000655523.1:ENST00000658299.1:ENST00000662692.1:ENST00000667296.1:ENST00000653734.1:ENST00000654785.1:ENST00000524361.5	lncRNA	lncRNA	lncRNA	lncRNA	2	30	2	1.97143	2.98005	3.98867	0.0507	0.0398704	0.161534	0.156383
chr17	82628648	82628744	6853492	0	-	0.510417	(0.476,0.515]	chr17	679367	10	INTRON	INTRON	WDR45B	ENSG00000141580.16	ENST00000392325.9:ENST00000572583.5:ENST00000571835.5:ENST00000573616.5:ENST00000571817.5:ENST00000574828.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	106	2	2.21861	2.980025	3.74144	0.00138145	4.08784e-4	0.0341261	0.0185763
chrX	54545986	54546083	7664763	0	+	0.443299	(0.44,0.476]	chrX	784757	13	INTRON	INTRON	GNL3L	ENSG00000130119.17	ENST00000674498.1:ENST00000674229.1:ENST00000674300.1:ENST00000674225.1:ENST00000674178.1:ENST00000336470.8:ENST00000360845.3:ENST00000674238.1:ENST00000674420.1:ENST00000674311.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	67	2	2.21079	2.9800199999999997	3.74925	0.0194581	4.08974e-4	0.119831	0.0185763
chr1	217737743	217737843	315812	0	+	0.4	(0.378,0.408]	chr1	36326	540	INTRON	INTRON	SPATA17	ENSG00000162814.11	ENST00000470448.5:ENST00000366933.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	24	2	2.13703	2.979985	3.82294	0.0797592	0.044228	0.19979	0.162255
chr17	39528299	39528397	6607667	0	+	0.408163	(0.378,0.408]	chr17	643330	16	INTRON	INTRON	CDK12	ENSG00000167258.15	ENST00000447079.6:ENST00000430627.6:ENST00000559663.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	24	2	2.13703	2.979985	3.82294	0.0797592	0.044228	0.19979	0.162255
chr7	10764987	10765087	3484430	0	-	0.38	(0.378,0.408]	chr7	325772	2031	INTRON	INTRON	MGC4859	ENSG00000283117.1	ENST00000634803.1	lncRNA	lncRNA	lncRNA	lncRNA	1	24	2	2.13703	2.979985	3.82294	0.0797592	0.044228	0.19979	0.162255
chr7	22687509	22687609	3500254	0	-	0.4	(0.378,0.408]	chr7	326683	221	INTRON	INTRON	STEAP1B	ENSG00000105889.16	ENST00000650428.1	protein_coding	processed_transcript	protein_coding	processed_transcript	1	24	2	2.13703	2.979985	3.82294	0.0797592	0.044228	0.19979	0.162255
chr7	140795564	140795664	3662426	0	-	0.39	(0.378,0.408]	chr7	340057	7	INTRON	INTRON	BRAF	ENSG00000157764.14	ENST00000496384.7:ENST00000644969.2:ENST00000644120.1:ENST00000642875.1:ENST00000646891.1:ENST00000644905.1:ENST00000642228.1:ENST00000288602.11:ENST00000646730.1:ENST00000644650.1:ENST00000647434.1:ENST00000497784.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	24	2	2.13703	2.979985	3.82294	0.0797592	0.044228	0.19979	0.162255
chr8	126098726	126098826	4049617	0	-	0.39	(0.378,0.408]	chr8	369341	253	INTRON	INTRON	LINC00861	ENSG00000245164.9	ENST00000651482.1	lncRNA	lncRNA	lncRNA	lncRNA	1	24	2	2.13703	2.979985	3.82294	0.0797592	0.044228	0.19979	0.162255
chr11	894117	894215	4890302	0	-	0.459184	(0.44,0.476]	chr11	458000	2	INTRON	INTRON	CHID1	ENSG00000177830.18	ENST00000323578.13:ENST00000449825.5:ENST00000454838.6:ENST00000429789.6:ENST00000528581.5:ENST00000436108.6:ENST00000526714.5:ENST00000524832.5:ENST00000531859.5:ENST00000534254.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	63	2	2.73781	2.979865	3.22192	0.00360821	0.00276493	0.0533855	0.04867
chr1	461264	461364	355162	0	-	0.34	(0.32,0.35]	chr1	40950	810	INTRON	INTRON	ENSG00000237094	ENSG00000237094.12	ENST00000455207.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	2	55	2	2.6321	2.9797000000000002	3.3273	0.0268	0.00218894	0.123349	0.0435144
chr1	108793081	108793181	178722	0	+	0.34	(0.32,0.35]	chr1	19434	1	SS3_PROX	SS3_PROX:INTRON	STXBP3	ENSG00000116266.11	ENST00000370008.4:ENST00000495245.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	55	2	2.6321	2.9797000000000002	3.3273	0.0268	0.00218894	0.123349	0.0435144
chr7	120989145	120989240	3393639	0	+	0.378947	(0.378,0.408]	chr7	317663	2	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CPED1	ENSG00000106034.18	ENST00000340646.9:ENST00000310396.10:ENST00000428526.5:ENST00000495036.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	112	2	2.34772	2.97965	3.61158	8.34292e-4	7.16572e-4	0.0266389	0.0244192
chr9	111374238	111374338	4314149	0	-	0.35	(0.32,0.35]	chr9	396633	2	SS3_PROX	SS3_PROX:INTRON	ECPAS	ENSG00000136813.15	ENST00000684092.1:ENST00000338205.9:ENST00000259335.8	protein_coding	protein_coding	protein_coding	protein_coding	6	144	2	2.65289	2.9796250000000004	3.30636	0.00199729	4.51477e-5	0.0406642	0.00546706
chr15	58672757	58672857	6192738	0	-	0.34	(0.32,0.35]	chr15	589951	72	INTRON	INTRON	ADAM10	ENSG00000137845.15	ENST00000260408.8:ENST00000402627.5:ENST00000561288.1:ENST00000396136.6:ENST00000559053.1:ENST00000558733.5:ENST00000439637.5:ENST00000497846.5:ENST00000558004.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	74	2	2.30731	2.97959	3.65187	0.0176772	5.49434e-4	0.10525	0.0213049
chr5	139584679	139584779	2500737	0	+	0.52	(0.515,0.57]	chr5	239026	219	INTRON	INTRON	UBE2D2	ENSG00000131508.16	ENST00000511725.5:ENST00000505007.5:ENST00000398733.8:ENST00000510470.1:ENST00000398734.8:ENST00000505548.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	105	2	2.70352	2.979425	3.25533	9.70997e-4	3.44919e-5	0.0283239	0.00467863
chr2	87514419	87514518	826519	0	+	0.323232	(0.32,0.35]	chr2	92446	47	INTRON	INTRON	CYTOR:ENSG00000284879	ENSG00000222041.12:ENSG00000284879.1	ENST00000642796.1:ENST00000643589.1:ENST00000642451.1:ENST00000646386.1:ENST00000644478.1:ENST00000409139.6:ENST00000331944.10:ENST00000644125.1:ENST00000643743.1:ENST00000644577.1:ENST00000643276.1:ENST00000409898.2:ENST00000419680.6:ENST00000644976.1:ENST00000643070.1:ENST00000646855.1:ENST00000414584.1:ENST00000455131.5:ENST00000646636.1:ENST00000642293.1:ENST00000423846.5:ENST00000644040.1:ENST00000645138.1:ENST00000437561.2:ENST00000629257.1:ENST00000645729.1:ENST00000413202.1	lncRNA	lncRNA	lncRNA	lncRNA	2	55	2	2.96746	2.979355	2.99125	0.00958447	0.00815799	0.0820838	0.0810802
chr12	120155889	120155960	5432836	0	-	0.253521	[0,0.28]	chr12	519206	2	SS3_PROX	SS3_PROX:INTRON	GCN1	ENSG00000089154.11	ENST00000300648.7:ENST00000551920.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	67	2	2.77716	2.9792699999999996	3.18138	0.022039	0.00487606	0.115395	0.0640618
chr7	101842360	101842460	3366612	0	+	0.44	(0.408,0.44]	chr7	315215	230	INTRON	INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000497815.5:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000607092.1:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000558469.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	103	2	2.42404	2.978955	3.53387	0.00413548	4.96441e-5	0.0566868	0.00577648
chrX	66018145	66018244	7672634	0	+	0.373737	(0.35,0.378]	chrX	785238	18	EXON_LNCRNA	EXON_LNCRNA:INTRON	MIR223HG	ENSG00000274536.8	ENST00000618234.5:ENST00000621933.2:ENST00000691658.1:ENST00000658749.1	lncRNA	lncRNA	lncRNA	lncRNA	8	155	2	2.60678	2.97895	3.35112	2.67918e-4	1.82543e-4	0.0149998	0.01176
chr10	119584786	119584885	4705908	0	-	0.585859	(0.57,1]	chr10	434228	18	INTRON	INTRON	TIAL1	ENSG00000151923.18	ENST00000369093.6:ENST00000436547.7:ENST00000489822.5:ENST00000497671.5:ENST00000470781.5:ENST00000412524.5:ENST00000369086.1:ENST00000462373.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	42	2	2.01216	2.978935	3.94571	0.0163389	4.59736e-5	0.101571	0.00552588
chr16	89764213	89764306	6544261	0	-	0.322581	(0.32,0.35]	chr16	634465	11	INTRON	INTRON	FANCA	ENSG00000187741.16	ENST00000561667.2:ENST00000389301.8:ENST00000568369.6:ENST00000564475.6:ENST00000696275.1:ENST00000696287.1:ENST00000696286.1:ENST00000696274.1:ENST00000567510.2:ENST00000696291.1:ENST00000305699.15:ENST00000567988.5:ENST00000561660.1:ENST00000563510.5:ENST00000563318.1:ENST00000696276.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	88	2	2.50411	2.97886	3.45361	0.00267989	0.00193809	0.0478767	0.0399255
chr7	851238	851310	3268835	0	+	0.5	(0.476,0.515]	chr7	303596	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	SUN1	ENSG00000164828.18	ENST00000452783.6:ENST00000389574.7:ENST00000401592.6:ENST00000413171.6:ENST00000405266.5:ENST00000425407.6:ENST00000450881.5:ENST00000419312.5:ENST00000429178.5:ENST00000433212.5:ENST00000464442.5:ENST00000480475.5:ENST00000488628.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	102	2	2.74942	2.978815	3.20821	9.59979e-4	3.05489e-4	0.0282401	0.0155972
chr7	884784	884882	3269192	0	+	0.540816	(0.515,0.57]	chr7	303678	5	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	SUN1:GET4	ENSG00000164828.18:ENSG00000239857.7	ENST00000457861.1:ENST00000265857.8:ENST00000412734.6:ENST00000407192.5:ENST00000441491.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	13	210	2	2.78765	2.978815	3.16998	1.28104e-5	9.59784e-6	0.00266104	0.00238174
chr10	69201844	69201938	4445295	0	+	0.531915	(0.515,0.57]	chr10	410138	10	INTRON	INTRON	SUPV3L1	ENSG00000156502.14	ENST00000359655.9	protein_coding	protein_coding	protein_coding	protein_coding	3	55	2	2.58624	2.978745	3.37125	0.00526399	0.00136343	0.0633874	0.0339121
chr20	47354849	47354949	7349499	0	-	0.43	(0.408,0.44]	chr20	749366	31	INTRON	INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000435836.5	protein_coding	protein_coding	protein_coding	protein_coding	3	64	2	2.36185	2.978745	3.59564	0.0133164	5.73354e-4	0.094512	0.0217398
chr4	26363425	26363524	1937101	0	+	0.50505	(0.476,0.515]	chr4	194373	4	INTRON	INTRON	RBPJ	ENSG00000168214.22	ENST00000512351.5:ENST00000681799.1:ENST00000681403.1:ENST00000342295.6:ENST00000512671.6:ENST00000506956.5:ENST00000345843.8:ENST00000361572.10:ENST00000514380.5:ENST00000514807.5:ENST00000348160.9:ENST00000681506.1:ENST00000509158.6:ENST00000691085.1:ENST00000692303.1:ENST00000681856.1:ENST00000513182.5:ENST00000681025.1:ENST00000681679.1:ENST00000680210.1:ENST00000355476.8:ENST00000680140.1:ENST00000511401.5:ENST00000680511.1:ENST00000510778.7:ENST00000679698.1:ENST00000679469.1:ENST00000681484.1:ENST00000505958.6:ENST00000507561.5:ENST00000514730.5:ENST00000507574.5:ENST00000514675.5:ENST00000515573.5:ENST00000689192.1:ENST00000680928.1:ENST00000681260.1:ENST00000681093.1:ENST00000504423.2:ENST00000511546.5:ENST00000342320.8:ENST00000504907.5:ENST00000514656.3:ENST00000511451.5:ENST00000681264.1:ENST00000504938.1:ENST00000680204.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	101	2	2.86908	2.97869	3.0883	7.31567e-4	4.03011e-4	0.0248722	0.0180338
chr6	133961388	133961487	2961838	0	+	0.30303	(0.28,0.32]	chr6	278509	76	INTRON	INTRON	TBPL1	ENSG00000028839.10	ENST00000613034.4:ENST00000416965.5:ENST00000457715.1:ENST00000367871.5:ENST00000237264.9:ENST00000367869.1	protein_coding	protein_coding	protein_coding	protein_coding	8	180	2	2.48171	2.9786799999999998	3.47565	4.96166e-4	2.23911e-4	0.0201536	0.0137379
chr19	15289348	15289448	7146974	0	-	0.5	(0.476,0.515]	chr19	721965	90	INTRON	INTRON	BRD4	ENSG00000141867.19	ENST00000679869.1:ENST00000360016.9:ENST00000594841.5:ENST00000597315.5:ENST00000601941.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	38	2	1.52615	2.9785399999999997	4.43093	0.0739267	0.00931369	0.190914	0.0855292
chr2	43950900	43951000	1110154	0	-	0.53	(0.515,0.57]	chr2	119069	3	SS3_PROX	SS3_PROX:INTRON	LRPPRC	ENSG00000138095.20	ENST00000260665.12:ENST00000682308.1:ENST00000683459.1:ENST00000683623.1:ENST00000683125.1:ENST00000683994.1:ENST00000684619.1:ENST00000683833.1:ENST00000682546.1:ENST00000682585.1:ENST00000683220.1:ENST00000683796.1:ENST00000682607.1:ENST00000683590.1:ENST00000684306.1:ENST00000683213.1:ENST00000682779.1:ENST00000682885.1:ENST00000684743.1:ENST00000683346.1:ENST00000683072.1:ENST00000682303.1:ENST00000683329.1:ENST00000682933.1:ENST00000684383.1:ENST00000682480.1:ENST00000684290.1:ENST00000684341.1:ENST00000682595.1:ENST00000683645.1:ENST00000683802.1:ENST00000681961.1:ENST00000683694.1:ENST00000683989.1:ENST00000447246.2:ENST00000409659.6:ENST00000682104.1:ENST00000683934.1:ENST00000681959.1:ENST00000684482.1:ENST00000683082.1:ENST00000467058.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	89	2	2.53705	2.978415	3.41978	0.00186194	1.03805e-4	0.039946	0.00915599
chr2	26354356	26354455	715093	0	+	0.444444	(0.44,0.476]	chr2	82572	76	INTRON	INTRON	SELENOI	ENSG00000138018.19	ENST00000442141.5:ENST00000260585.12:ENST00000447170.1	protein_coding	protein_coding	protein_coding	protein_coding	8	143	2	2.6832	2.978345	3.27349	3.12677e-4	9.91234e-5	0.0162569	0.00838368
chr22	18574374	18574474	7551096	0	-	0.62	(0.57,1]	chr22	771830	4	SS5_PROX	SS5_PROX:INTRON	PI4KAP1	ENSG00000274602.5	ENST00000612500.4:ENST00000611748.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	3	38	2	2.79889	2.97832	3.15775	0.0110274	2.72513e-4	0.0927187	0.0151392
chr14	61043703	61043803	5739729	0	+	0.41	(0.408,0.44]	chr14	545009	2	SS5_PROX	SS5_PROX:INTRON	SLC38A6	ENSG00000139974.16	ENST00000354886.6:ENST00000525723.6:ENST00000267488.9:ENST00000491344.7:ENST00000451406.5:ENST00000527591.5:ENST00000529345.6:ENST00000533744.6:ENST00000529212.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	50	2	2.36073	2.978185	3.59564	0.0481658	5.73354e-4	0.153019	0.0217398
chr4	70934427	70934527	1970826	0	+	0.46	(0.44,0.476]	chr4	197571	315	INTRON	INTRON	MOB1B	ENSG00000173542.9	ENST00000502869.5:ENST00000509041.5:ENST00000309395.7:ENST00000396051.2:ENST00000511449.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	11	172	2	2.29717	2.978185	3.6592	2.99534e-4	4.14053e-5	0.0155054	0.0054616
chr19	21455203	21455302	7158756	0	-	0.525253	(0.515,0.57]	chr19	723692	33	EXON_MRNA	EXON_MRNA:INTRON	ENSG00000268119	ENSG00000268119.7	ENST00000596705.5:ENST00000597444.6:ENST00000594557.1:ENST00000599993.7:ENST00000600469.7:ENST00000656526.1:ENST00000663704.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	5	87	2	2.89379	2.97809	3.06239	6.62949e-4	2.98479e-4	0.0234815	0.0154922
chr8	90355366	90355466	3793649	0	+	0.27	[0,0.28]	chr8	351792	33	INTRON	INTRON	LINC00534	ENSG00000253394.7	ENST00000662145.1:ENST00000655523.1:ENST00000517400.6:ENST00000658299.1:ENST00000663329.1:ENST00000658342.1:ENST00000523283.6:ENST00000655219.1:ENST00000662692.1:ENST00000667296.1:ENST00000667565.1:ENST00000523406.2:ENST00000659030.1:ENST00000653734.1:ENST00000654785.1:ENST00000524361.5:ENST00000668745.1:ENST00000661519.1:ENST00000671657.1:ENST00000655123.1:ENST00000663098.1:ENST00000670903.1:ENST00000654946.1	lncRNA	lncRNA	lncRNA	lncRNA	4	109	2	2.48142	2.977825	3.47423	0.00375221	0.00268371	0.0562562	0.0464781
chr11	3381827	3381921	4722843	0	+	0.404255	(0.378,0.408]	chr11	436970	4	INTRON	INTRON	TSSC2	ENSG00000223756.8	ENST00000685598.1:ENST00000691197.1:ENST00000533775.6:ENST00000690471.1:ENST00000529482.5:ENST00000693396.1:ENST00000685130.1:ENST00000526284.5:ENST00000530366.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	9	131	2	1.37293	2.977765	4.5826	0.0317131	6.36177e-6	0.144715	0.00190816
chrX	53142318	53142413	7664218	0	+	0.515789	(0.515,0.57]	chrX	784678	6	EXON_LNCRNA	EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	KANTR	ENSG00000232593.7	ENST00000603385.2:ENST00000366185.2:ENST00000604849.1	protein_coding	processed_transcript	protein_coding	processed_transcript	2	41	2	2.76354	2.97766	3.19178	0.0147344	0.00289534	0.0983813	0.0494641
chr2	222936073	222936171	1021992	0	+	0.326531	(0.32,0.35]	chr2	109357	10	INTRON	INTRON	ACSL3	ENSG00000123983.15	ENST00000392066.7:ENST00000407441.5:ENST00000680251.1:ENST00000679541.1:ENST00000681906.1:ENST00000679545.1:ENST00000679932.1:ENST00000680100.1:ENST00000680475.1:ENST00000680525.1:ENST00000680420.1:ENST00000681326.1:ENST00000681292.1:ENST00000680395.1:ENST00000680736.1:ENST00000680147.1:ENST00000357430.8:ENST00000681009.1:ENST00000679514.1:ENST00000681697.1:ENST00000680921.1:ENST00000681383.1:ENST00000679558.1:ENST00000680684.1:ENST00000680424.1:ENST00000495541.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	57	2	2.37794	2.977625	3.57731	0.0498601	7.67492e-4	0.156383	0.0254532
chr18	707476	707576	6939729	0	-	0.36	(0.35,0.378]	chr18	686444	5	INTRON	INTRON	ENOSF1	ENSG00000132199.20	ENST00000647584.2:ENST00000383578.7:ENST00000340116.12:ENST00000581475.5:ENST00000580982.5:ENST00000585128.6:ENST00000584453.5:ENST00000578651.5:ENST00000585004.5:ENST00000583771.1:ENST00000580605.5:ENST00000581332.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	83	2	2.28182	2.97744	3.67306	0.00637232	7.05001e-4	0.0724821	0.024224
chr20	31558712	31558811	7253433	0	+	0.525253	(0.515,0.57]	chr20	736659	35	INTRON	INTRON	HM13	ENSG00000101294.18	ENST00000335574.10:ENST00000674240.1:ENST00000340852.9:ENST00000398174.9:ENST00000649820.1:ENST00000466766.2:ENST00000650367.1:ENST00000344042.5:ENST00000649374.1:ENST00000469126.5:ENST00000492709.5:ENST00000469097.5:ENST00000487964.5:ENST00000649583.1:ENST00000460389.5:ENST00000494153.5:ENST00000483310.5:ENST00000472128.5:ENST00000474466.5:ENST00000468559.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	56	2	2.763	2.9773899999999998	3.19178	0.00289534	0.00257143	0.0494641	0.045134
chr15	63827424	63827524	6200840	0	-	0.31	(0.28,0.32]	chr15	591445	465	INTRON	INTRON	HERC1	ENSG00000103657.14	ENST00000443617.7:ENST00000561400.1:ENST00000559886.1:ENST00000558532.1:ENST00000560462.1:ENST00000560316.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	98	2	2.14534	2.97731	3.8092800000000002	0.0117054	5.62738e-4	0.0962115	0.0219303
chr2	69942449	69942548	805787	0	+	0.313131	(0.28,0.32]	chr2	89939	43	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	MXD1	ENSG00000059728.11	ENST00000540449.5:ENST00000264444.7:ENST00000465446.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	59	2	2.78004	2.977285	3.17453	0.0193244	0.00429297	0.108861	0.0599065
chr22	20065143	20065239	7478203	0	+	0.53125	(0.515,0.57]	chr22	762692	6	UTR3	UTR3:EXON_MRNA	TANGO2	ENSG00000183597.16	ENST00000401886.5:ENST00000420290.6:ENST00000432883.5:ENST00000434570.6:ENST00000447208.6:ENST00000456048.5:ENST00000398042.6:ENST00000399807.7:ENST00000450019.5:ENST00000327374.9:ENST00000401833.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	71	2	2.76279	2.977285	3.19178	0.00289534	7.25448e-4	0.0494641	0.0247646
chr8	11844437	11844535	3908600	0	-	0.5	(0.476,0.515]	chr8	358133	3	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	CTSB	ENSG00000164733.22	ENST00000677671.1:ENST00000678092.1:ENST00000679128.1:ENST00000677873.1:ENST00000676691.1:ENST00000678598.1:ENST00000353047.11:ENST00000677650.1:ENST00000526481.7:ENST00000676825.1:ENST00000676952.1:ENST00000679121.1:ENST00000677283.1:ENST00000678242.1:ENST00000677366.1:ENST00000677544.1:ENST00000530640.7:ENST00000677418.1:ENST00000677047.1:ENST00000676502.1:ENST00000531089.6:ENST00000678629.1:ENST00000678145.1:ENST00000678929.1:ENST00000677819.1:ENST00000677415.1:ENST00000678357.1:ENST00000676755.1:ENST00000420692.7:ENST00000679051.1:ENST00000453527.7:ENST00000678067.1:ENST00000679140.1:ENST00000524654.2:ENST00000677082.1:ENST00000533455.6:ENST00000531551.5:ENST00000534382.6:ENST00000679214.1:ENST00000531502.6:ENST00000534510.6:ENST00000677865.1:ENST00000533572.6:ENST00000345125.8:ENST00000526645.6:ENST00000534149.6:ENST00000505496.7:ENST00000532392.2:ENST00000676843.1:ENST00000524500.6:ENST00000525076.6:ENST00000527215.7:ENST00000528965.2:ENST00000532656.7:ENST00000532409.6:ENST00000526195.6:ENST00000678615.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	86	2	2.21313	2.977285	3.74144	0.00401502	4.08784e-4	0.0578059	0.0185763
chr4	126598397	126598497	2236693	0	-	0.24	[0,0.28]	chr4	219023	1329	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	3	91	2	2.90545	2.97706	3.04867	0.0104221	0.00202423	0.085482	0.0416117
chr11	31721255	31721355	4762944	0	+	0.39	(0.378,0.408]	chr11	440436	14	INTRON	INTRON	ELP4	ENSG00000109911.19	ENST00000379163.10:ENST00000350638.10:ENST00000640961.2:ENST00000640081.1:ENST00000640231.1:ENST00000638917.1:ENST00000395934.2:ENST00000638184.1:ENST00000640790.1:ENST00000638828.1:ENST00000639182.1:ENST00000638317.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	40	2	1.53052	2.977005	4.42349	0.0744544	0.00992961	0.192012	0.0877296
chr16	27533090	27533190	6467113	0	-	0.42	(0.408,0.44]	chr16	624405	4	SS5_PROX	SS5_PROX:INTRON	GTF3C1	ENSG00000077235.18	ENST00000356183.9:ENST00000561623.5	protein_coding	protein_coding	protein_coding	protein_coding	4	40	2	1.43792	2.97698	4.51604	0.062843	0.0137419	0.196433	0.0949306
chr21	42987547	42987647	7411669	0	+	0.42	(0.408,0.44]	chr21	755317	125	INTRON	INTRON	PKNOX1	ENSG00000160199.15	ENST00000432907.6:ENST00000418336.6:ENST00000291547.10:ENST00000480179.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	40	2	1.43792	2.97698	4.51604	0.062843	0.0137419	0.196433	0.0949306
chr16	8106722	8106822	6441576	0	-	0.45	(0.44,0.476]	chr16	620351	991	INTRON	INTRON	ENSG00000260289	ENSG00000260289.2	ENST00000670665.1:ENST00000654046.1:ENST00000567103.2	lncRNA	lncRNA	lncRNA	lncRNA	8	120	2	2.01805	2.97695	3.93585	0.00332266	1.04728e-4	0.0512081	0.00863456
chr2	61244609	61244709	1128229	0	-	0.34	(0.32,0.35]	chr2	121231	24	INTRON	INTRON	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000463046.5:ENST00000472706.5:ENST00000453734.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	40	2	1.78201	2.97691	4.17181	0.04531	0.0365003	0.153759	0.149888
chr2	152683223	152683323	1246174	0	-	0.34	(0.32,0.35]	chr2	132338	15	INTRON	INTRON	PRPF40A	ENSG00000196504.20	ENST00000410080.8:ENST00000545856.8:ENST00000696382.1:ENST00000696381.1:ENST00000354363.11:ENST00000493468.7:ENST00000448428.2:ENST00000467114.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	74	2	2.4961	2.97691	3.45772	0.00967886	0.00128487	0.0828038	0.0333518
chr8	53973647	53973746	3952805	0	-	0.313131	(0.28,0.32]	chr8	362510	28	INTRON	INTRON	TCEA1	ENSG00000187735.15	ENST00000396401.7:ENST00000521604.7:ENST00000521086.6:ENST00000522635.5:ENST00000522397.5:ENST00000640382.1:ENST00000640041.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	43	2	1.81152	2.97683	4.14214	0.0579756	0.034446	0.167723	0.147767
chr1	89907120	89907220	160387	0	+	0.38	(0.378,0.408]	chr1	17285	601	INTRON	INTRON	LRRC8D	ENSG00000171492.14	ENST00000525774.5:ENST00000337338.9:ENST00000394593.7:ENST00000532201.5:ENST00000414841.1:ENST00000527156.1:ENST00000441269.2	protein_coding	protein_coding	protein_coding	protein_coding	6	127	2	2.78373	2.9768299999999996	3.16993	9.21936e-4	7.75659e-5	0.0278396	0.00735438
chr11	5380087	5380187	4897020	0	-	0.39	(0.378,0.408]	chr11	459187	328	INTRON	INTRON	HBG2:ENSG00000239920:HBE1:OR51B5	ENSG00000196565.15:ENSG00000239920.2:ENSG00000213931.7:ENSG00000167355.8	ENST00000380252.6:ENST00000380259.7:ENST00000292896.3:ENST00000380237.5:ENST00000420726.6:ENST00000420465.6:ENST00000415970.6:ENST00000418729.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:nonsense_mediated_decay:processed_transcript	3	46	2	1.98888	2.976795	3.96471	0.032421	0.0205239	0.145026	0.110999
chr15	79921275	79921373	6241155	0	-	0.316327	(0.28,0.32]	chr15	595788	12	EXON_LNCRNA	EXON_LNCRNA:INTRON	ST20-MTHFS:ST20:ENSG00000278600	ENSG00000259332.3:ENSG00000180953.11:ENSG00000278600.1	ENST00000615374.5:ENST00000479961.1:ENST00000494999.1:ENST00000485386.1:ENST00000618835.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	6	149	2	2.25851	2.976775	3.69504	0.00557435	3.39708e-5	0.0649303	0.0046443
chr12	76075838	76075938	5370137	0	-	0.5	(0.476,0.515]	chr12	512329	12	INTRON	INTRON	NAP1L1	ENSG00000187109.15	ENST00000618691.5:ENST00000393263.7:ENST00000431879.7:ENST00000547773.5:ENST00000544816.5:ENST00000542344.5:ENST00000535020.6:ENST00000549596.5:ENST00000552342.5:ENST00000548044.5:ENST00000550934.5:ENST00000551992.5:ENST00000548273.5:ENST00000551600.5:ENST00000547704.5:ENST00000549988.5:ENST00000547479.5:ENST00000549479.1:ENST00000551500.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	45	2	1.33919	2.976605	4.61402	0.06316	0.00947755	0.197199	0.0817766
chr1	8795781	8795881	373566	0	-	0.5	(0.476,0.515]	chr1	43555	28	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000656437.1:ENST00000659924.1	protein_coding	protein_coding	protein_coding	protein_coding	5	87	2	1.93099	2.97654	4.02209	0.0140312	6.68973e-5	0.0959618	0.00677892
chr10	35569170	35569269	4426846	0	+	0.474747	(0.44,0.476]	chr10	407969	1	UTR3	UTR3:EXON_MRNA	CCNY	ENSG00000108100.18	ENST00000374706.5:ENST00000374704.8:ENST00000265375.13:ENST00000339497.7	protein_coding	protein_coding	protein_coding	protein_coding	7	105	2	1.86755	2.976495	4.08544	0.00715715	7.98065e-5	0.0756118	0.00801397
chr2	20298477	20298577	1076251	0	-	0.38	(0.378,0.408]	chr2	114994	4	INTRON	INTRON	PUM2	ENSG00000055917.16	ENST00000338086.9:ENST00000361078.7:ENST00000440577.5	protein_coding	protein_coding	protein_coding	protein_coding	5	93	2	2.67359	2.9764049999999997	3.27922	0.00312717	4.32891e-4	0.0499153	0.0186929
chr17	16432800	16432891	6562592	0	+	0.428571	(0.408,0.44]	chr17	637894	1	INTRON	INTRON	TRPV2	ENSG00000187688.15	ENST00000338560.12:ENST00000577277.6:ENST00000581560.5:ENST00000580788.6:ENST00000577865.2	protein_coding	protein_coding	protein_coding	protein_coding	4	77	2	2.19524	2.976395	3.75755	0.00990486	2.62433e-4	0.0838372	0.0143317
chr3	191434493	191434593	1590272	0	+	0.4	(0.378,0.408]	chr3	164637	85	INTRON	INTRON	ENSG00000223812	ENSG00000223812.8	ENST00000657540.1:ENST00000439804.6:ENST00000663647.1:ENST00000668751.1:ENST00000666632.1:ENST00000664732.1:ENST00000662007.1:ENST00000641158.1:ENST00000664994.1:ENST00000669884.1:ENST00000642133.1:ENST00000656380.1:ENST00000641055.1:ENST00000662578.1:ENST00000661668.1:ENST00000658347.1:ENST00000661029.1:ENST00000651548.2:ENST00000669360.1:ENST00000653490.1:ENST00000656942.1:ENST00000666456.1:ENST00000668276.1:ENST00000671595.1:ENST00000660290.1	lncRNA	lncRNA	lncRNA	lncRNA	2	52	2	2.63247	2.976315	3.32016	0.0215745	0.00268328	0.123836	0.0464781
chr19	21455401	21455500	7158758	0	-	0.393939	(0.378,0.408]	chr19	723692	35	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:INTRON	ENSG00000268119	ENSG00000268119.7	ENST00000596705.5:ENST00000597444.6:ENST00000594557.1:ENST00000599993.7:ENST00000600469.7:ENST00000656526.1:ENST00000663704.1:ENST00000593653.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	16	320	2	2.57584	2.976155	3.37647	1.18446e-4	4.73841e-7	0.00986214	3.67591e-4
chr19	8487242	8487301	7011207	0	+	0.338983	(0.32,0.35]	chr19	696218	2	SS5_PROX	SS5_PROX:INTRON	HNRNPM	ENSG00000099783.12	ENST00000348943.7:ENST00000325495.9:ENST00000600806.5:ENST00000620401.4:ENST00000596295.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	88	2	2.56589	2.976005	3.38612	0.00249604	0.00204522	0.0446195	0.041908
chr20	3919296	3919394	7227206	0	+	0.306122	(0.28,0.32]	chr20	734522	1	INTRON	INTRON	PANK2	ENSG00000125779.24	ENST00000497424.5:ENST00000316562.9:ENST00000610179.7:ENST00000643504.2:ENST00000336066.8:ENST00000646394.1:ENST00000621507.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	59	2	2.73077	2.9757550000000004	3.22074	0.0220748	0.00362783	0.115395	0.055479
chr8	129395864	129395963	4059228	0	-	0.363636	(0.35,0.378]	chr8	369574	56	INTRON	INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1:ENST00000676273.1:ENST00000667643.1:ENST00000668791.1:ENST00000663716.1:ENST00000663572.1:ENST00000676148.1:ENST00000667962.1:ENST00000674877.1:ENST00000675316.1:ENST00000674656.1:ENST00000446592.7:ENST00000667341.1:ENST00000675186.1:ENST00000652971.1:ENST00000661447.1:ENST00000674863.1:ENST00000675498.1:ENST00000675527.1:ENST00000676108.1:ENST00000657647.1:ENST00000675589.1:ENST00000675913.1:ENST00000675109.1:ENST00000671632.1:ENST00000671311.1:ENST00000676099.1:ENST00000660652.1:ENST00000675522.1:ENST00000675183.1:ENST00000658861.1:ENST00000663991.1:ENST00000675044.1:ENST00000675435.1:ENST00000674639.1:ENST00000676069.1:ENST00000675532.1:ENST00000674762.1:ENST00000523151.6:ENST00000675948.1:ENST00000665364.1:ENST00000657251.1:ENST00000675166.1:ENST00000674883.1:ENST00000675867.1:ENST00000674580.1:ENST00000675393.1:ENST00000520048.1:ENST00000674906.1:ENST00000676030.1:ENST00000670588.1:ENST00000675072.1:ENST00000664936.1:ENST00000652914.1	lncRNA	lncRNA	lncRNA	lncRNA	7	154	2	2.7624	2.9757350000000002	3.18907	2.88804e-4	1.41175e-4	0.0150776	0.0108189
chr1	230077598	230077698	334182	0	+	0.35	(0.32,0.35]	chr1	38926	98	INTRON	INTRON	GALNT2	ENSG00000143641.10	ENST00000494106.1:ENST00000366672.5:ENST00000488903.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	73	2	2.71053	2.9757	3.24087	0.00420518	0.00346747	0.0572185	0.0539802
chr9	131412625	131412724	4217155	0	+	0.343434	(0.32,0.35]	chr9	386720	180	INTRON	INTRON	PRRC2B	ENSG00000288701.1	ENST00000682525.1:ENST00000684596.1:ENST00000683519.1:ENST00000682501.1	protein_coding	protein_coding	protein_coding	protein_coding	3	73	2	2.71053	2.9757	3.24087	0.00420518	0.00346747	0.0572185	0.0539802
chr9	120776569	120776655	4335292	0	-	0.383721	(0.378,0.408]	chr9	398239	5	EXON_LNCRNA	EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	FBXW2	ENSG00000119402.18	ENST00000493559.1:ENST00000684405.1:ENST00000684001.1:ENST00000684047.1:ENST00000608872.6:ENST00000453291.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	66	2	2.47752	2.975645	3.47377	0.0092831	0.00103087	0.0817766	0.0294094
chr1	165865472	165865571	244128	0	+	0.30303	(0.28,0.32]	chr1	29139	372	INTRON	INTRON	UCK2	ENSG00000143179.16	ENST00000367879.9:ENST00000642653.1	protein_coding	protein_coding	protein_coding	protein_coding	2	59	2	2.87382	2.9756299999999998	3.07744	0.014868	0.00604536	0.0989021	0.0700813
chr11	3709353	3709453	4894270	0	-	0.4	(0.378,0.408]	chr11	458814	17	INTRON	INTRON	NUP98	ENSG00000110713.17	ENST00000359171.8:ENST00000324932.12:ENST00000650171.1:ENST00000355260.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	66	2	2.51464	2.975545	3.43645	0.00684341	0.00171162	0.0748032	0.037419
chr16	70283084	70283184	6510433	0	-	0.54	(0.515,0.57]	chr16	630612	3	SS3_PROX	SS3_PROX:INTRON	AARS1	ENSG00000090861.17	ENST00000674963.1:ENST00000675643.1:ENST00000674691.1:ENST00000261772.13:ENST00000675569.1:ENST00000676209.1:ENST00000676211.1:ENST00000676040.1:ENST00000675953.1:ENST00000675691.1:ENST00000676004.1:ENST00000675403.1:ENST00000676212.1:ENST00000675045.1:ENST00000675035.1:ENST00000676168.1:ENST00000674652.1:ENST00000675133.1:ENST00000675120.1:ENST00000674811.1:ENST00000674512.1:ENST00000675853.1:ENST00000565361.3:ENST00000676247.1:ENST00000674848.1:ENST00000674962.1:ENST00000675371.1:ENST00000675986.1:ENST00000674768.1:ENST00000675297.1:ENST00000675751.1:ENST00000564359.6:ENST00000675338.1:ENST00000675155.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	56	2	2.90311	2.975545	3.04798	0.0094233	5.9198e-4	0.0817766	0.0221485
chr8	99400621	99400721	3815162	0	+	0.38	(0.378,0.408]	chr8	353207	84	INTRON	INTRON	VPS13B	ENSG00000132549.20	ENST00000496144.5:ENST00000683334.1:ENST00000357162.7:ENST00000358544.7:ENST00000683619.1:ENST00000682153.1:ENST00000682358.1:ENST00000682145.1:ENST00000355155.6:ENST00000682234.1:ENST00000683486.1:ENST00000522802.5:ENST00000521037.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	66	2	2.51464	2.975545	3.43645	0.00684341	0.00171162	0.0748032	0.037419
chr1	228087821	228087919	330820	0	+	0.367347	(0.35,0.378]	chr1	38111	40	INTRON	INTRON	ARF1	ENSG00000143761.16	ENST00000540651.5:ENST00000272102.10:ENST00000470670.5:ENST00000478424.5:ENST00000470558.5:ENST00000473949.5:ENST00000477451.5:ENST00000478336.5:ENST00000541182.1:ENST00000469235.5:ENST00000473546.1:ENST00000482962.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	94	2	2.24809	2.975525	3.70296	0.00361961	6.20319e-4	0.0554656	0.0229151
chr10	101482555	101482655	4511108	0	+	0.53	(0.515,0.57]	chr10	415425	27	INTRON	INTRON	BTRC	ENSG00000166167.18	ENST00000393441.8:ENST00000475200.5:ENST00000408038.6:ENST00000370187.8:ENST00000465182.1:ENST00000370183.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	36	2	1.44089	2.9754449999999997	4.51	0.0617046	0.00809449	0.193423	0.0766625
chr2	53961658	53961758	1120485	0	-	0.39	(0.378,0.408]	chr2	120102	120	INTRON	INTRON	PSME4	ENSG00000068878.15	ENST00000404125.6:ENST00000389993.7:ENST00000481518.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	125	2	1.75132	2.97536	4.1994	0.00695593	5.19961e-5	0.0754576	0.00627105
chr7	878527	878627	3269128	0	+	0.41	(0.408,0.44]	chr7	303673	2	SS5_PROX	SS5_PROX:INTRON	SUN1:GET4	ENSG00000164828.18:ENSG00000239857.7	ENST00000457861.1:ENST00000265857.8:ENST00000412734.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	13	248	2	2.81794	2.975295	3.13265	2.33417e-5	1.49359e-5	0.00395389	0.00290818
chr15	63575994	63576093	6042640	0	+	0.535354	(0.515,0.57]	chr15	575454	12	INTRON	INTRON	USP3	ENSG00000140455.17	ENST00000540797.5:ENST00000380324.8:ENST00000558157.5:ENST00000559873.5:ENST00000559192.5:ENST00000268049.11:ENST00000558285.5:ENST00000559257.5:ENST00000538686.6:ENST00000559711.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	42	2	2.74772	2.97506	3.2024	0.0142192	0.00322022	0.103638	0.0507087
chr11	70428451	70428550	4821931	0	+	0.434343	(0.408,0.44]	chr11	449656	27	INTRON	INTRON	CTTN	ENSG00000085733.16	ENST00000346329.7:ENST00000301843.13:ENST00000376561.7:ENST00000527962.5:ENST00000498223.3:ENST00000393747.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	48	2	2.58624	2.97501	3.36378	0.0273686	0.0016048	0.123904	0.0367961
chr12	132086963	132087058	5250209	0	+	0.273684	[0,0.28]	chr12	499285	13	INTRON	INTRON	EP400P1	ENSG00000185684.16	ENST00000407361.8:ENST00000446190.5:ENST00000690966.1:ENST00000689047.1:ENST00000454179.7:ENST00000689533.1:ENST00000688036.1:ENST00000688136.1:ENST00000488030.5:ENST00000389560.6:ENST00000689403.1:ENST00000443539.6:ENST00000392352.5:ENST00000613241.1:ENST00000539205.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	4	109	2	2.37401	2.9749350000000003	3.57586	0.00568456	0.00187793	0.0678837	0.039073
chr22	18565812	18565912	7551010	0	-	0.27	[0,0.28]	chr22	771829	129	INTRON	INTRON	PI4KAP1	ENSG00000274602.5	ENST00000612500.4:ENST00000611748.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	4	109	2	2.37401	2.9749350000000003	3.57586	0.00568456	0.00187793	0.0678837	0.039073
chr11	484159	484258	4719246	0	+	0.454545	(0.44,0.476]	chr11	436026	37	INTRON	INTRON	PTDSS2	ENSG00000174915.12	ENST00000532614.5:ENST00000308020.6:ENST00000531520.5:ENST00000526878.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	76	2	2.63962	2.974865	3.31011	0.00259023	0.00126329	0.0452934	0.0329641
chr12	98595339	98595432	5199000	0	+	0.333333	(0.32,0.35]	chr12	491851	10	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	SLC25A3	ENSG00000075415.15	ENST00000401722.7:ENST00000188376.9:ENST00000551917.5:ENST00000546766.5:ENST00000228318.8:ENST00000552981.6:ENST00000547534.5:ENST00000550695.1:ENST00000551123.5:ENST00000549338.5:ENST00000548847.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	14	307	2	2.74671	2.9747000000000003	3.20269	2.86709e-5	2.60554e-5	0.00444076	0.00402177
chr15	49171873	49171972	6019125	0	+	0.525253	(0.515,0.57]	chr15	573674	9	INTRON	INTRON	GALK2	ENSG00000156958.15	ENST00000559883.5:ENST00000559963.5:ENST00000327171.7:ENST00000560654.5:ENST00000558775.5:ENST00000561074.5:ENST00000559040.1:ENST00000396509.6:ENST00000558956.5:ENST00000559208.5:ENST00000560031.6:ENST00000559095.1:ENST00000560119.5:ENST00000558145.5:ENST00000544523.5:ENST00000560138.5:ENST00000559423.5:ENST00000559454.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	73	2	2.92115	2.9746699999999997	3.02819	0.00110258	7.81057e-4	0.03038	0.0257168
chr7	139250158	139250258	3436773	0	+	0.46	(0.44,0.476]	chr7	320196	127	INTRON	INTRON	UBN2	ENSG00000157741.15	ENST00000486663.5:ENST00000473989.8	protein_coding	protein_coding	protein_coding	protein_coding	4	76	2	2.26452	2.974625	3.68473	0.00654074	5.47507e-4	0.0735539	0.0215463
chrX	24726055	24726152	7632017	0	+	0.350515	(0.35,0.378]	chrX	781649	1	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	POLA1	ENSG00000101868.13	ENST00000672178.1:ENST00000379068.8:ENST00000677890.1:ENST00000379059.7:ENST00000611764.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	37	2	1.65083	2.97461	4.29839	0.0521072	0.0294717	0.177022	0.128055
chr1	110349884	110349984	182449	0	+	0.53	(0.515,0.57]	chr1	20251	16	INTRON	INTRON	LAMTOR5-AS1	ENSG00000224699.10	ENST00000626572.2	lncRNA	lncRNA	lncRNA	lncRNA	5	89	2	2.90111	2.974545	3.04798	5.9198e-4	3.57078e-4	0.0221485	0.0175154
chr21	44867233	44867331	7469063	0	-	0.428571	(0.408,0.44]	chr21	761251	12	INTRON	INTRON	PTTG1IP	ENSG00000183255.12	ENST00000397887.7:ENST00000445724.3:ENST00000330938.8:ENST00000494690.5:ENST00000480234.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	17	170	2	1.36617	2.97452	4.58287	0.0135776	5.4058e-6	0.101534	0.00172973
chr7	72892108	72892208	3329919	0	+	0.37	(0.35,0.378]	chr7	309565	6	INTRON	INTRON	POM121	ENSG00000196313.13	ENST00000627934.3:ENST00000395270.5	protein_coding	protein_coding	protein_coding	protein_coding	8	178	2	2.49532	2.9745049999999997	3.45369	0.00165224	4.16077e-6	0.0369207	0.0013576
chrX	13713816	13713914	7764089	0	-	0.418367	(0.408,0.44]	chrX	793545	17	UTR3	UTR3:EXON_MRNA	TRAPPC2	ENSG00000196459.15	ENST00000359680.9:ENST00000380579.6:ENST00000683983.1:ENST00000683569.1	protein_coding	protein_coding	protein_coding	protein_coding	2	48	2	2.89193	2.97449	3.05705	0.00950364	0.00658331	0.0863579	0.0701901
chr1	150234078	150234178	550796	0	-	0.38	(0.378,0.408]	chr1	64703	1	SS5_PROX	SS5_PROX:INTRON	ANP32E	ENSG00000143401.15	ENST00000583931.6:ENST00000629042.2:ENST00000616917.4:ENST00000436748.6:ENST00000369114.9:ENST00000369115.3:ENST00000533654.5:ENST00000534220.1:ENST00000532744.2	protein_coding	protein_coding	protein_coding	protein_coding	2	51	2	2.71183	2.974455	3.23708	0.0170789	0.00365053	0.110899	0.0535094
chr13	113211482	113211582	5548306	0	+	0.54	(0.515,0.57]	chr13	530119	10	INTRON	INTRON	CUL4A	ENSG00000139842.15	ENST00000375441.7:ENST00000326335.8:ENST00000451881.5:ENST00000617546.4:ENST00000488558.2:ENST00000375440.9:ENST00000474116.5:ENST00000494985.5:ENST00000463426.5:ENST00000498562.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	107	2	2.7614899999999998	2.9744	3.18731	6.09302e-4	7.269e-5	0.0223951	0.00767614
chr8	23567680	23567776	3715488	0	+	0.583333	(0.57,1]	chr8	345233	10	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	SLC25A37	ENSG00000147454.14	ENST00000519973.6:ENST00000290075.10:ENST00000417331.6:ENST00000518881.5:ENST00000520654.1:ENST00000523930.1:ENST00000523883.5:ENST00000522164.5:ENST00000521637.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	61	585	2	2.7811	2.974275	3.16745	2.07948e-8	6.3884e-10	5.26366e-5	3.55415e-6
chr1	32115131	32115231	63524	0	+	0.57	(0.515,0.57]	chr1	8071	66	INTRON	INTRON	KPNA6	ENSG00000025800.14	ENST00000373625.8:ENST00000471599.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	87	2	2.64171	2.974175	3.30664	0.00130576	1.4883e-4	0.0331539	0.0105921
chr4	79244777	79244871	1985877	0	+	0.574468	(0.57,1]	chr4	198612	2	EXON_LNCRNA	EXON_LNCRNA:INTRON	LINC01088	ENSG00000249307.8	ENST00000509088.6:ENST00000658852.1:ENST00000651041.1:ENST00000510667.5:ENST00000513153.5:ENST00000515597.1:ENST00000507476.5:ENST00000512130.5:ENST00000692734.1:ENST00000437737.3	lncRNA	lncRNA	lncRNA	lncRNA	4	45	2	2.86892	2.97415	3.07938	0.00125753	4.22401e-4	0.0323608	0.0183838
chr18	9110162	9110262	6868668	0	+	0.4	(0.378,0.408]	chr18	680510	48	INTRON	INTRON	NDUFV2	ENSG00000178127.13	ENST00000577703.1:ENST00000318388.11:ENST00000583375.5:ENST00000400033.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	15	312	2	2.31563	2.974135	3.63264	6.49391e-4	6.30117e-8	0.0232863	1.08953e-4
chr10	70410034	70410134	4447134	0	+	0.45	(0.44,0.476]	chr10	410345	51	INTRON	INTRON	EIF4EBP2	ENSG00000148730.7	ENST00000373218.5	protein_coding	protein_coding	protein_coding	protein_coding	2	47	2	2.86231	2.97411	3.08591	0.012214	0.00481262	0.0910127	0.0638089
chr11	57304460	57304558	4952682	0	-	0.612245	(0.57,1]	chr11	464753	11	INTRON	INTRON	TNKS1BP1	ENSG00000149115.14	ENST00000528882.5:ENST00000358252.8:ENST00000532437.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	45	2	2.9315	2.97411	3.01672	9.1984e-4	5.94133e-4	0.0278396	0.0221865
chr3	51431110	51431210	1696581	0	-	0.47	(0.44,0.476]	chr3	174376	5	INTRON	INTRON	DCAF1	ENSG00000145041.16	ENST00000504652.5:ENST00000423656.5:ENST00000684031.1:ENST00000335891.5	protein_coding	protein_coding	protein_coding	protein_coding	2	47	2	2.86231	2.97411	3.08591	0.012214	0.00481262	0.0910127	0.0638089
chr5	37641425	37641525	2343018	0	+	0.46	(0.44,0.476]	chr5	226260	358	INTRON	INTRON	WDR70	ENSG00000082068.9	ENST00000504564.1:ENST00000511906.5:ENST00000265107.9:ENST00000510699.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	47	2	2.86231	2.97411	3.08591	0.012214	0.00481262	0.0910127	0.0638089
chr5	112978372	112978471	2453394	0	+	0.323232	(0.32,0.35]	chr5	235061	10	INTRON	INTRON	DCP2	ENSG00000172795.17	ENST00000515408.5:ENST00000513585.6:ENST00000502635.2:ENST00000510046.1:ENST00000389063.3:ENST00000674880.1:ENST00000504961.1:ENST00000512751.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	32	2	1.88468	2.9738350000000002	4.06299	0.0559439	0.0515071	0.176696	0.165463
chr22	16615207	16615303	7473494	0	+	0.4375	(0.408,0.44]	chr22	761980	2	INTRON	INTRON	TPTEP1	ENSG00000100181.22	ENST00000558085.6:ENST00000400593.6:ENST00000426585.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	12	236	2	2.89337	2.9738249999999997	3.05428	5.22256e-5	8.67424e-6	0.00629433	0.00211418
chr22	24541415	24541514	7563540	0	-	0.525253	(0.515,0.57]	chr22	773775	11	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	GUCD1	ENSG00000138867.17	ENST00000621833.4:ENST00000407471.7:ENST00000435822.6:ENST00000398245.8:ENST00000490922.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	11	192	2	2.76494	2.9737600000000004	3.18258	9.09959e-5	4.11437e-6	0.00797978	0.00146847
chr19	36225859	36225958	7057532	0	+	0.484848	(0.476,0.515]	chr19	704664	73	INTRON	INTRON	ZNF146	ENSG00000167635.12	ENST00000456324.5:ENST00000591063.5:ENST00000443387.3:ENST00000586094.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	155	2	2.57786	2.973715	3.36957	3.43839e-4	3.71392e-5	0.0165103	0.00519066
chr9	135934112	135934210	4372283	0	-	0.602041	(0.57,1]	chr9	402502	2	INTRON	INTRON	UBAC1	ENSG00000130560.9	ENST00000371756.4:ENST00000489050.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	28	2	2.52405	2.97364	3.42323	0.0263139	8.58388e-4	0.133676	0.0267428
chr16	8957678	8957778	6442696	0	-	0.45	(0.44,0.476]	chr16	620597	14	INTRON	INTRON	USP7	ENSG00000187555.16	ENST00000673704.1:ENST00000344836.9:ENST00000563961.5:ENST00000569230.5:ENST00000566273.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	48	2	2.81896	2.973475	3.12799	0.0120766	0.0050635	0.0962311	0.0621733
chr18	21631428	21631528	6879349	0	+	0.45	(0.44,0.476]	chr18	681855	24	UTR3	UTR3:EXON_MRNA:INTRON	SNRPD1	ENSG00000167088.11	ENST00000300413.10:ENST00000577906.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	48	2	2.81896	2.973475	3.12799	0.0120766	0.0050635	0.0962311	0.0621733
chr20	32514442	32514541	7326204	0	-	0.454545	(0.44,0.476]	chr20	746111	26	INTRON	INTRON	NOL4L	ENSG00000197183.15	ENST00000621426.7:ENST00000375678.7:ENST00000201961.6:ENST00000419612.1	protein_coding	protein_coding	protein_coding	protein_coding	2	48	2	2.81896	2.973475	3.12799	0.0120766	0.0050635	0.0962311	0.0621733
chrX	123962106	123962206	7716755	0	+	0.52	(0.515,0.57]	chrX	789456	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	STAG2	ENSG00000101972.20	ENST00000394477.5:ENST00000218089.13:ENST00000455404.5:ENST00000483575.5:ENST00000687810.1:ENST00000687071.1:ENST00000469481.1:ENST00000458700.5:ENST00000371160.5:ENST00000435103.5:ENST00000687852.1:ENST00000371145.8:ENST00000692982.1:ENST00000371157.7:ENST00000691035.1:ENST00000686802.1:ENST00000691383.1:ENST00000686127.1:ENST00000371144.7:ENST00000458176.5:ENST00000466748.5:ENST00000471107.1:ENST00000428941.5:ENST00000435215.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	144	2	2.53935	2.973465	3.40758	1.91549e-4	1.9086e-5	0.0120546	0.00354138
chr14	76386431	76386531	5797866	0	+	0.39	(0.378,0.408]	chr14	549239	96	INTRON	INTRON	ESRRB	ENSG00000119715.15	ENST00000512784.6:ENST00000380887.7:ENST00000505752.6:ENST00000644823.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	49	2	2.66785	2.97346	3.27907	0.0224639	0.0023379	0.11692	0.0442989
chr5	43504260	43504358	2615030	0	-	0.408163	(0.378,0.408]	chr5	248624	1	INTRON	INTRON	C5orf34	ENSG00000172244.9	ENST00000306862.7:ENST00000503655.2:ENST00000509489.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	49	2	2.66785	2.97346	3.27907	0.0224639	0.0023379	0.11692	0.0442989
chr17	1678440	1678517	6701484	0	-	0.428571	(0.408,0.44]	chr17	656062	1	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	PRPF8	ENSG00000174231.17	ENST00000304992.11:ENST00000572621.5:ENST00000577001.1:ENST00000573716.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	120	2	2.3863	2.973435	3.56057	9.67143e-4	3.57398e-4	0.0282401	0.0169202
chr9	128080970	128081070	4202559	0	+	0.36	(0.35,0.378]	chr9	383913	120	INTRON	INTRON	SLC25A25	ENSG00000148339.13	ENST00000373068.6:ENST00000373069.10	protein_coding	protein_coding	protein_coding	protein_coding	5	96	2	1.74826	2.9734000000000003	4.19854	0.0279529	2.91516e-5	0.124524	0.00428471
chrX	73971971	73972071	7682378	0	+	0.36	(0.35,0.378]	chrX	786638	36	INTRON	INTRON	JPX	ENSG00000225470.8	ENST00000664637.1:ENST00000639185.1:ENST00000655090.1:ENST00000640437.1:ENST00000660546.1:ENST00000667886.1:ENST00000660840.1:ENST00000657179.1:ENST00000670506.1:ENST00000657910.1:ENST00000662120.1:ENST00000671207.1:ENST00000659254.1:ENST00000656624.1:ENST00000667573.1:ENST00000660856.1:ENST00000660836.1:ENST00000668590.1:ENST00000658649.1:ENST00000414209.6:ENST00000654137.1:ENST00000670994.1:ENST00000602772.5:ENST00000655879.1:ENST00000657372.1:ENST00000657096.1:ENST00000602985.6:ENST00000670685.1:ENST00000670503.1:ENST00000663027.1:ENST00000654995.1:ENST00000602895.6:ENST00000654374.1:ENST00000660087.1:ENST00000665032.1:ENST00000671336.1:ENST00000671476.1:ENST00000667057.1:ENST00000670192.1:ENST00000670464.1:ENST00000665345.1:ENST00000661546.1:ENST00000662543.1:ENST00000602938.6:ENST00000664295.1:ENST00000654005.1:ENST00000669149.1:ENST00000659852.1:ENST00000656509.1:ENST00000602294.6:ENST00000667294.1:ENST00000663470.1:ENST00000602920.6:ENST00000671021.1:ENST00000659849.1:ENST00000667937.1:ENST00000661130.1:ENST00000654196.1:ENST00000655994.1:ENST00000659373.1:ENST00000662239.1:ENST00000670805.1:ENST00000656263.1:ENST00000653069.1:ENST00000657638.1:ENST00000653808.1:ENST00000653929.1:ENST00000653885.1:ENST00000659023.1:ENST00000602546.5:ENST00000659622.1:ENST00000671518.1:ENST00000670408.1	lncRNA	lncRNA	lncRNA	lncRNA	5	96	2	1.74826	2.9734000000000003	4.19854	0.0279529	2.91516e-5	0.124524	0.00428471
chr1	11024218	11024317	24684	0	+	0.313131	(0.28,0.32]	chr1	2610	10	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	TARDBP	ENSG00000120948.19	ENST00000240185.8:ENST00000614757.4:ENST00000473869.5:ENST00000611136.4:ENST00000477447.6:ENST00000612542.1:ENST00000620505.1:ENST00000621573.1:ENST00000611008.4:ENST00000613177.1:ENST00000622108.1:ENST00000496840.1:ENST00000480464.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	15	373	2	2.68392	2.9732950000000002	3.26267	1.81104e-4	2.80235e-6	0.012210500000000001	0.00107271
chr8	47951321	47951420	3945671	0	-	0.40404	(0.378,0.408]	chr8	361951	69	INTRON	INTRON	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7	protein_coding	protein_coding	protein_coding	protein_coding	5	90	2	2.12071	2.97323	3.82575	0.00601933	3.23711e-4	0.0700813	0.0165891
chr3	143015191	143015285	1529214	0	+	0.297872	(0.28,0.32]	chr3	159347	4	INTRON	INTRON	U2SURP	ENSG00000163714.18	ENST00000600150.5:ENST00000488497.7:ENST00000493782.5:ENST00000473835.7:ENST00000461591.5:ENST00000493598.6:ENST00000463563.6:ENST00000470400.5:ENST00000465175.2:ENST00000485374.5:ENST00000491827.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	80	2	2.94244	2.973195	3.00395	0.0101329	0.00144407	0.0850389	0.0348397
chr11	667762	667862	4889201	0	-	0.44	(0.408,0.44]	chr11	457709	76	INTRON	INTRON	DEAF1	ENSG00000177030.19	ENST00000382409.4:ENST00000527170.5:ENST00000685854.1:ENST00000683307.1:ENST00000528864.6:ENST00000525626.6:ENST00000682936.1:ENST00000690068.1:ENST00000692634.1:ENST00000687329.1:ENST00000686001.1:ENST00000689835.1:ENST00000525904.5:ENST00000530813.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	64	2	2.53313	2.97318	3.41323	0.00739595	0.00129989	0.074277	0.0333764
chr12	93435458	93435558	5388174	0	-	0.43	(0.408,0.44]	chr12	513727	107	INTRON	INTRON	UBE2N	ENSG00000177889.10	ENST00000318066.7:ENST00000550657.1:ENST00000549833.1:ENST00000549490.1:ENST00000552442.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	64	2	2.53313	2.97318	3.41323	0.00739595	0.00129989	0.074277	0.0333764
chr6	126018869	126018969	2956396	0	+	0.41	(0.408,0.44]	chr6	278045	54	INTRON	INTRON	TRMT11	ENSG00000066651.20	ENST00000479748.5:ENST00000368332.7:ENST00000648977.1:ENST00000334379.11:ENST00000466316.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	64	2	2.53313	2.97318	3.41323	0.00739595	0.00129989	0.074277	0.0333764
chr2	177217204	177217282	925964	0	+	0.282051	(0.28,0.32]	chr2	101752	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HNRNPA3	ENSG00000170144.21	ENST00000392524.6:ENST00000679159.1:ENST00000678111.1:ENST00000678421.1:ENST00000677863.1:ENST00000676681.1:ENST00000676629.1:ENST00000677337.1:ENST00000676488.1:ENST00000677043.1:ENST00000676874.1:ENST00000676762.1:ENST00000411529.6:ENST00000676736.1:ENST00000483137.2:ENST00000677508.1:ENST00000435711.5:ENST00000679328.1:ENST00000432457.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	148	2	2.67153	2.973155	3.27478	0.00436402	1.46922e-4	0.060356	0.0110957
chr11	3758093	3758192	4894768	0	-	0.484848	(0.476,0.515]	chr11	458876	43	INTRON	INTRON	NUP98	ENSG00000110713.17	ENST00000359171.8:ENST00000324932.12:ENST00000650171.1:ENST00000355260.7:ENST00000397004.8:ENST00000397007.8:ENST00000527104.5:ENST00000529379.1:ENST00000397013.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	64	2	2.16377	2.972945	3.78212	0.0243026	2.36145e-4	0.12011	0.0136195
chr17	31284226	31284326	6593084	0	+	0.36	(0.35,0.378]	chr17	641260	185	INTRON	INTRON	NF1	ENSG00000196712.20	ENST00000696138.1:ENST00000356175.7:ENST00000691014.1:ENST00000358273.9:ENST00000579081.5:ENST00000456735.6:ENST00000493220.5:ENST00000687863.1:ENST00000696140.1:ENST00000696141.1:ENST00000581113.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	34	2	1.75561	2.972915	4.19022	0.0739399	0.0209891	0.190914	0.122348
chr19	36225560	36225660	7057529	0	+	0.43	(0.408,0.44]	chr19	704664	70	INTRON	INTRON	ZNF146	ENSG00000167635.12	ENST00000456324.5:ENST00000591063.5:ENST00000443387.3:ENST00000586094.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	217	2	2.82339	2.972915	3.12244	7.86126e-5	1.15743e-5	0.00794729	0.00251267
chr3	100275048	100275148	1465708	0	+	0.37	(0.35,0.378]	chr3	153594	74	INTRON	INTRON	TBC1D23	ENSG00000036054.13	ENST00000394144.9:ENST00000485687.5:ENST00000344949.9:ENST00000486274.5:ENST00000471098.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	51	2	2.78212	2.972915	3.16371	0.0168532	0.00383956	0.103549	0.0562562
chr10	60789422	60789520	4435883	0	+	0.367347	(0.35,0.378]	chr10	409191	8	INTRON	INTRON	CDK1	ENSG00000170312.17	ENST00000519078.6:ENST00000316629.8:ENST00000395284.8:ENST00000448257.6:ENST00000373809.2:ENST00000487784.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	31	2	1.9755	2.97291	3.97032	0.0578667	0.0398617	0.167723	0.161534
chr16	28965037	28965135	6334953	0	+	0.469388	(0.44,0.476]	chr16	606692	13	UTR3	UTR3:EXON_MRNA	NFATC2IP	ENSG00000176953.13	ENST00000564978.5:ENST00000320805.9	protein_coding	protein_coding	protein_coding	protein_coding	5	87	2	2.04674	2.972845	3.89895	0.00803423	2.02261e-4	0.0803474	0.0129814
chr2	107709811	107709911	1205647	0	-	0.32	(0.28,0.32]	chr2	128526	61	INTRON	INTRON	LINC01885:ENSG00000286769	ENSG00000237880.2:ENSG00000286769.1	ENST00000654481.1:ENST00000669817.1	lncRNA	lncRNA	lncRNA	lncRNA	8	198	2	2.80726	2.972775	3.13829	2.81759e-4	1.47071e-4	0.0154561	0.0105341
chr7	106283051	106283150	3608592	0	-	0.353535	(0.35,0.378]	chr7	336542	55	INTRON	INTRON	NAMPT	ENSG00000105835.13	ENST00000681491.1:ENST00000222553.8:ENST00000681494.1:ENST00000680708.1:ENST00000681653.1:ENST00000681391.1:ENST00000680991.1:ENST00000680077.1:ENST00000681456.1:ENST00000680675.1:ENST00000681550.1:ENST00000680864.1:ENST00000680584.1:ENST00000680669.1:ENST00000424768.2:ENST00000681255.1:ENST00000679873.1:ENST00000679643.1:ENST00000681878.1:ENST00000489732.2:ENST00000679951.1:ENST00000680823.1:ENST00000680468.1:ENST00000681936.1:ENST00000680152.1:ENST00000681887.1:ENST00000680129.1:ENST00000680786.1:ENST00000681223.1:ENST00000679717.1:ENST00000354289.9:ENST00000491027.6:ENST00000393618.6:ENST00000489358.5:ENST00000441045.6:ENST00000417537.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	83	2	2.69	2.9727449999999997	3.25549	0.00363602	0.00107271	0.0535085	0.0300133
chr11	62884690	62884790	4799635	0	+	0.55	(0.515,0.57]	chr11	444838	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SLC3A2	ENSG00000168003.18	ENST00000680729.1:ENST00000680002.1:ENST00000681467.1:ENST00000377890.6:ENST00000538084.2:ENST00000681569.1:ENST00000680725.1:ENST00000377891.6:ENST00000377889.6:ENST00000681215.1:ENST00000535296.5:ENST00000680631.1:ENST00000544377.2:ENST00000680610.1:ENST00000680297.1:ENST00000680134.1:ENST00000681232.1:ENST00000681657.1:ENST00000541425.6:ENST00000679908.1:ENST00000681563.1:ENST00000338663.12:ENST00000680654.1:ENST00000681107.1:ENST00000541649.2:ENST00000538682.6:ENST00000536981.6:ENST00000539891.6:ENST00000679594.1:ENST00000535768.2:ENST00000537508.6:ENST00000457660.6:ENST00000546312.5:ENST00000542922.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	26	2	1.86007	2.9727249999999996	4.08538	0.0526611	0.0253843	0.178401	0.12011
chr14	65020392	65020491	5752888	0	+	0.525253	(0.515,0.57]	chr14	546440	35	INTRON	INTRON	CHURC1-FNTB:FNTB	ENSG00000125954.13:ENSG00000257365.8	ENST00000552941.6:ENST00000549987.1:ENST00000246166.3:ENST00000555372.5:ENST00000555742.5:ENST00000554210.5:ENST00000554334.5:ENST00000556709.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	26	2	1.86007	2.9727249999999996	4.08538	0.0526611	0.0253843	0.178401	0.12011
chr19	4017602	4017702	7001290	0	+	0.57	(0.515,0.57]	chr19	694402	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	PIAS4	ENSG00000105229.7	ENST00000262971.3:ENST00000599999.5:ENST00000600566.5:ENST00000593518.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	26	2	1.86007	2.9727249999999996	4.08538	0.0526611	0.0253843	0.178401	0.12011
chr2	61518613	61518712	1131023	0	-	0.343434	(0.32,0.35]	chr2	121606	38	INTRON	INTRON	XPO1	ENSG00000082898.19	ENST00000676553.1:ENST00000677556.1:ENST00000677814.1:ENST00000676771.1:ENST00000677803.1:ENST00000677239.1:ENST00000678790.1:ENST00000677928.1:ENST00000678182.1:ENST00000677150.1:ENST00000678172.1:ENST00000678360.1:ENST00000678081.1:ENST00000676889.1:ENST00000676783.1:ENST00000679035.1:ENST00000677422.1:ENST00000677417.1:ENST00000677813.1:ENST00000676999.1:ENST00000676667.1:ENST00000678263.1:ENST00000678877.1:ENST00000677933.1:ENST00000680228.1:ENST00000677289.1:ENST00000677190.1:ENST00000401558.7:ENST00000428210.5:ENST00000677290.1:ENST00000677850.1:ENST00000451765.6:ENST00000676789.1:ENST00000678741.1:ENST00000404992.6:ENST00000406957.5:ENST00000443240.5:ENST00000476585.5:ENST00000468259.1:ENST00000420673.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	15	304	2	2.49348	2.97262	3.45176	7.49737e-5	1.52087e-5	0.00725166	0.00312635
chr9	93625569	93625669	4159698	0	+	0.5	(0.476,0.515]	chr9	379230	483	INTRON	INTRON	PHF2	ENSG00000197724.11	ENST00000359246.9:ENST00000375376.8:ENST00000610682.1	protein_coding	protein_coding	protein_coding	protein_coding	2	31	2	1.72558	2.97261	4.21964	0.0767648	0.0167715	0.196164	0.110511
chr18	36174838	36174936	6891906	0	+	0.5	(0.476,0.515]	chr18	683093	3	UTR3	UTR3:EXON_MRNA	ELP2	ENSG00000134759.14	ENST00000358232.11:ENST00000540766.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	64	2	2.69886	2.9725799999999998	3.2463	0.00385209	0.00262374	0.0542786	0.0470772
chrX	110177492	110177590	7701792	0	+	0.489796	(0.476,0.515]	chrX	788168	42	UTR3	UTR3:EXON_MRNA:INTRON	TMEM164	ENSG00000157600.12	ENST00000372072.7:ENST00000372073.5:ENST00000372068.7:ENST00000288381.4:ENST00000464177.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	64	2	2.69886	2.9725799999999998	3.2463	0.00385209	0.00262374	0.0542786	0.0470772
chr22	37854579	37854676	7511742	0	+	0.484536	(0.476,0.515]	chr22	767167	27	INTRON	INTRON	EIF3L	ENSG00000100129.18	ENST00000412331.6:ENST00000624234.3:ENST00000439997.5:ENST00000381683.10:ENST00000476955.5:ENST00000652021.1:ENST00000436452.6:ENST00000414316.5:ENST00000477256.5:ENST00000406934.5:ENST00000451427.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	116	2	2.85682	2.9725599999999996	3.0883	7.31567e-4	1.52104e-4	0.0248722	0.0106137
chr6	53329753	53329853	3107997	0	-	0.43	(0.408,0.44]	chr6	291049	337	INTRON	INTRON	ELOVL5	ENSG00000012660.14	ENST00000370918.8:ENST00000542638.5:ENST00000304434.11:ENST00000485336.5:ENST00000465983.5:ENST00000486973.1:ENST00000370913.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	163	2	2.52239	2.972555	3.42272	0.00126655	4.00369e-6	0.0325433	0.00132039
chr11	31501783	31501883	4939163	0	-	0.31	(0.28,0.32]	chr11	462601	132	INTRON	INTRON	IMMP1L	ENSG00000148950.11	ENST00000532287.6:ENST00000534812.5:ENST00000526776.5:ENST00000278200.5:ENST00000648582.1:ENST00000533642.1:ENST00000527184.5:ENST00000528161.5:ENST00000532624.5:ENST00000529749.5:ENST00000530023.5:ENST00000531693.1:ENST00000532668.1:ENST00000533921.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	109	2	2.28563	2.972485	3.65934	0.00355956	0.00103147	0.0548355	0.029231300000000002
chr6	140873704	140873804	3240886	0	-	0.56	(0.515,0.57]	chr6	301060	75	INTRON	INTRON	ENSG00000234147	ENSG00000234147.3	ENST00000650553.2:ENST00000692940.1:ENST00000683641.1:ENST00000682196.1:ENST00000684320.1:ENST00000683889.1:ENST00000683062.1:ENST00000682608.1:ENST00000455011.2:ENST00000682812.1:ENST00000683340.1:ENST00000683841.1:ENST00000683589.1:ENST00000684268.1:ENST00000683480.1	lncRNA	lncRNA	lncRNA	lncRNA	6	104	2	2.79153	2.972475	3.15342	6.28135e-4	6.53448e-5	0.023031	0.00669181
chr7	148870897	148870991	3670629	0	-	0.319149	(0.28,0.32]	chr7	340631	2	UTR5	UTR5:EXON_MRNA:INTRON	EZH2	ENSG00000106462.12	ENST00000683292.1:ENST00000320356.7:ENST00000492143.5:ENST00000478654.5:ENST00000350995.6:ENST00000460911.5:ENST00000683744.1:ENST00000682317.1:ENST00000682263.1:ENST00000684300.1:ENST00000476773.5:ENST00000483967.5:ENST00000498186.5:ENST00000483012.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	193	2	2.34326	2.9723699999999997	3.60148	6.84757e-4	1.2396e-4	0.0238362	0.010016
chr7	22822779	22822849	3500766	0	-	0.657143	(0.57,1]	chr7	326711	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	TOMM7	ENSG00000196683.12	ENST00000463284.2:ENST00000372879.8:ENST00000358435.9:ENST00000496129.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	10	88	2	2.59141	2.972345	3.35328	8.52328e-5	2.99487e-5	0.00825602	0.0043593700000000004
chr19	8455874	8455974	7010873	0	+	0.31	(0.28,0.32]	chr19	696142	3	SS5_PROX	SS5_PROX:INTRON	HNRNPM	ENSG00000099783.12	ENST00000348943.7:ENST00000597813.5:ENST00000600092.5:ENST00000325495.9:ENST00000600806.5:ENST00000620401.4:ENST00000594907.5:ENST00000596984.5:ENST00000601645.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	157	2	2.58715	2.972335	3.35752	0.00300718	4.2124e-5	0.0493883	0.0052571
chr7	6028114	6028214	3475922	0	-	0.37	(0.35,0.378]	chr7	325172	1	SS5_PROX	SS5_PROX:INTRON	EIF2AK1	ENSG00000086232.13	ENST00000199389.11:ENST00000490523.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	55	2	2.24535	2.972315	3.69928	0.0647516	3.94786e-4	0.179192	0.0178567
chr1	54349635	54349734	463192	0	-	0.444444	(0.44,0.476]	chr1	55780	139	INTRON	INTRON	SSBP3	ENSG00000157216.16	ENST00000610401.5:ENST00000357475.9:ENST00000371319.8:ENST00000417664.7:ENST00000533946.6:ENST00000326956.12:ENST00000371320.8:ENST00000525990.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	116	2	2.33785	2.972265	3.60668	0.00284182	3.22849e-5	0.0473478	0.00453487
chr17	18209759	18209856	6568089	0	+	0.443299	(0.44,0.476]	chr17	638470	15	UTR3	UTR3:EXON_MRNA	ALKBH5	ENSG00000091542.9	ENST00000399138.5:ENST00000490106.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	32	2	1.83899	2.972195	4.1054	0.0589734	0.0220205	0.167915	0.123836
chr7	131396166	131396266	3417129	0	+	0.47	(0.44,0.476]	chr7	319206	68	INTRON	INTRON	MKLN1	ENSG00000128585.18	ENST00000421797.6:ENST00000416992.6:ENST00000429546.5:ENST00000446815.5:ENST00000494286.5:ENST00000352689.11:ENST00000494785.5:ENST00000458153.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	36	2	1.81595	2.97219	4.12843	0.0337192	0.0317953	0.14477	0.134145
chr16	85584634	85584734	6415678	0	+	0.41	(0.408,0.44]	chr16	615470	279	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	8	148	2	2.48866	2.972035	3.45541	4.94802e-4	7.81911e-5	0.0206827	0.00736696
chr12	70297658	70297758	5166981	0	+	0.3	(0.28,0.32]	chr12	489404	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	CNOT2	ENSG00000111596.14	ENST00000547780.5:ENST00000418359.7:ENST00000552319.5:ENST00000550160.5:ENST00000551661.5:ENST00000551132.5:ENST00000548021.5:ENST00000550641.6:ENST00000229195.8:ENST00000552915.5:ENST00000549443.5:ENST00000548741.5:ENST00000552483.5:ENST00000552422.5:ENST00000547321.5:ENST00000553020.5:ENST00000548159.5:ENST00000549750.5:ENST00000551043.5:ENST00000548599.5:ENST00000550194.5:ENST00000551873.5:ENST00000547867.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	122	2	2.2847	2.9720199999999997	3.65934	0.00208314	0.00103147	0.0424653	0.029231300000000002
chr19	45710819	45710915	7192982	0	-	0.59375	(0.57,1]	chr19	728452	3	UTR3	UTR3:EXON_MRNA	FBXO46	ENSG00000177051.6	ENST00000317683.4	protein_coding	protein_coding	protein_coding	protein_coding	4	46	2	2.73474	2.971955	3.20917	0.00241874	2.02775e-4	0.0454275	0.0129814
chr16	85193262	85193362	6411761	0	+	0.32	(0.28,0.32]	chr16	615455	80	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	2	39	2	1.81582	2.971945	4.12807	0.068122	0.0338135	0.184298	0.146709
chr2	61294348	61294448	1128750	0	-	0.34	(0.32,0.35]	chr2	121330	4	INTRON	INTRON	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000472706.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	55	2	2.90786	2.971915	3.03597	0.00993008	0.00832487	0.0877296	0.0774402
chr16	2265848	2265935	6431681	0	-	0.390805	(0.378,0.408]	chr16	618817	5	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	RNPS1	ENSG00000205937.12	ENST00000397086.6:ENST00000566458.5:ENST00000320225.10:ENST00000565678.5:ENST00000561718.5:ENST00000568631.5:ENST00000569598.6:ENST00000301730.12:ENST00000567147.5:ENST00000561518.5:ENST00000564311.5:ENST00000570051.5:ENST00000564601.5:ENST00000564764.5:ENST00000566180.5:ENST00000562690.5:ENST00000569709.5:ENST00000565333.5:ENST00000565589.5:ENST00000564822.1:ENST00000566783.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	70	2	2.17608	2.97191	3.76774	0.0218783	4.21442e-4	0.123836	0.0189827
chr1	46304519	46304618	96544	0	+	0.545455	(0.515,0.57]	chr1	12964	3	INTRON	INTRON	UQCRH	ENSG00000173660.12	ENST00000311672.10:ENST00000489056.5:ENST00000486951.1:ENST00000496387.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	133	2	2.68831	2.97182	3.25533	1.9467e-4	3.44919e-5	0.0127489	0.00467863
chr6	42624251	42624351	2865673	0	+	0.46	(0.44,0.476]	chr6	271081	40	INTRON	INTRON	UBR2	ENSG00000024048.11	ENST00000372899.6:ENST00000372901.2	protein_coding	protein_coding	protein_coding	protein_coding	2	47	2	2.74063	2.971765	3.2029	0.0176095	0.00308681	0.105143	0.0510391
chr7	12336736	12336811	3484732	0	-	0.333333	(0.32,0.35]	chr7	325815	1	SS5_PROX	SS5_PROX:INTRON	VWDE	ENSG00000146530.15	ENST00000275358.8:ENST00000452576.6:ENST00000521169.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	184	2	2.30781	2.971765	3.63572	0.001191	3.7908e-5	0.0315806	0.0049364
chr9	33929800	33929898	4244627	0	-	0.469388	(0.44,0.476]	chr9	390367	8	INTRON	INTRON	UBAP2	ENSG00000137073.24	ENST00000379238.7:ENST00000683659.1:ENST00000682239.1:ENST00000683140.1:ENST00000682209.1:ENST00000681980.1:ENST00000360802.6:ENST00000683252.1:ENST00000684158.1:ENST00000682949.1:ENST00000682914.1:ENST00000683717.1:ENST00000379239.9:ENST00000683084.1:ENST00000684754.1:ENST00000629575.2:ENST00000474372.1:ENST00000488443.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	47	2	2.74063	2.971765	3.2029	0.0176095	0.00308681	0.105143	0.0510391
chr21	10447733	10447833	7368472	0	+	0.43	(0.408,0.44]	chr21	751975	325	INTRON	INTRON	BAGE2	ENSG00000187172.15	ENST00000474011.5:ENST00000470054.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	4	77	2	2.2644	2.97163	3.67886	0.00768371	3.86173e-4	0.0753803	0.017761
chr1	10607151	10607251	24305	0	+	0.46	(0.44,0.476]	chr1	2524	74	INTRON	INTRON	PEX14	ENSG00000142655.13	ENST00000356607.9:ENST00000491661.2	protein_coding	protein_coding	protein_coding	protein_coding	2	47	2	2.9195	2.9715800000000003	3.02366	0.0102021	0.00603307	0.0850389	0.0700813
chr11	18399842	18399941	4749748	0	+	0.444444	(0.44,0.476]	chr11	439735	4	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	LDHA	ENSG00000134333.14	ENST00000543445.5:ENST00000396222.6:ENST00000430553.6:ENST00000545467.5:ENST00000422447.8:ENST00000545215.5:ENST00000541097.5:ENST00000536528.5:ENST00000543695.5:ENST00000539814.5:ENST00000494573.6:ENST00000227157.8:ENST00000478970.6:ENST00000495052.5:ENST00000540430.5:ENST00000379412.9:ENST00000542179.1:ENST00000486690.6:ENST00000625635.1:ENST00000537296.5:ENST00000460405.5:ENST00000375710.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	47	2	2.9195	2.9715800000000003	3.02366	0.0102021	0.00603307	0.0850389	0.0700813
chr15	84642695	84642795	6088271	0	+	0.46	(0.44,0.476]	chr15	579431	33	EXON_LNCRNA	EXON_LNCRNA	SCAND2P	ENSG00000176700.21	ENST00000348993.9	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	2	47	2	2.9195	2.9715800000000003	3.02366	0.0102021	0.00603307	0.0850389	0.0700813
chr7	111434277	111434377	3622829	0	-	0.32	(0.28,0.32]	chr7	337108	415	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000452895.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding	3	80	2	2.25939	2.971465	3.68354	0.021772	5.5135e-4	0.11491	0.0213455
chr6	4910836	4910936	2792209	0	+	0.58	(0.57,1]	chr6	263614	181	INTRON	INTRON	CDYL	ENSG00000153046.18	ENST00000328908.9:ENST00000440139.5:ENST00000397588.8:ENST00000472453.5:ENST00000449732.6:ENST00000343762.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	54	2	2.9315	2.971355	3.01121	9.1984e-4	1.18338e-4	0.0278396	0.00930884
chr6	133959398	133959497	2961818	0	+	0.292929	(0.28,0.32]	chr6	278509	56	INTRON	INTRON	TBPL1	ENSG00000028839.10	ENST00000613034.4:ENST00000416965.5:ENST00000457715.1:ENST00000367871.5:ENST00000237264.9:ENST00000367869.1	protein_coding	protein_coding	protein_coding	protein_coding	3	80	2	2.47203	2.971325	3.47062	0.0114089	0.00137212	0.0886611	0.0340241
chr5	62307619	62307719	2362044	0	+	0.52	(0.515,0.57]	chr5	227714	4	SS5_PROX	SS5_PROX:INTRON	KIF2A	ENSG00000068796.19	ENST00000401507.7:ENST00000407818.8:ENST00000674632.1:ENST00000674916.1:ENST00000676413.1:ENST00000676122.1:ENST00000674751.1:ENST00000514082.6:ENST00000675085.1:ENST00000504883.2:ENST00000381103.7:ENST00000676271.1:ENST00000512541.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	11	183	2	2.82828	2.9713000000000003	3.11432	2.95045e-5	1.39135e-5	0.00431591	0.00296433
chr7	105179653	105179753	3601803	0	-	0.5	(0.476,0.515]	chr7	336124	100	INTRON	INTRON	SRPK2	ENSG00000135250.17	ENST00000393651.8:ENST00000357311.7:ENST00000485455.1:ENST00000489828.5:ENST00000476117.1:ENST00000482897.5:ENST00000460391.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	78	2	2.01953	2.971295	3.92306	0.0163662	1.72405e-4	0.109586	0.0120625
chr12	104287242	104287336	5210007	0	+	0.574468	(0.57,1]	chr12	493189	7	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	TXNRD1	ENSG00000198431.17	ENST00000525566.6:ENST00000526266.5:ENST00000503506.6:ENST00000526691.5:ENST00000531691.5:ENST00000526390.5:ENST00000531689.5:ENST00000529546.5:ENST00000529751.1:ENST00000526207.1:ENST00000528079.6:ENST00000526580.5:ENST00000529784.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	19	2	1.77365	2.97123	4.16881	0.0670385	0.00574776	0.183051	0.0681402
chr1	27481391	27481491	406677	0	-	0.54	(0.515,0.57]	chr1	48986	521	INTRON	INTRON	WASF2	ENSG00000158195.11	ENST00000618852.5:ENST00000536657.1	protein_coding	protein_coding	protein_coding	protein_coding	2	41	2	2.68833	2.971225	3.25412	0.0184931	0.00224554	0.108861	0.0435144
chr15	63790346	63790446	6200469	0	-	0.55	(0.515,0.57]	chr15	591445	94	INTRON	INTRON	HERC1	ENSG00000103657.14	ENST00000443617.7:ENST00000561400.1:ENST00000559886.1:ENST00000558532.1:ENST00000560462.1:ENST00000560316.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	41	2	2.68833	2.971225	3.25412	0.0184931	0.00224554	0.108861	0.0435144
chr18	31911419	31911515	6961078	0	-	0.541667	(0.515,0.57]	chr18	688762	13	INTRON	INTRON	TRAPPC8	ENSG00000153339.15	ENST00000283351.10:ENST00000580104.5:ENST00000582539.5:ENST00000582513.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	41	2	2.68833	2.971225	3.25412	0.0184931	0.00224554	0.108861	0.0435144
chr9	135481596	135481693	4221047	0	+	0.546392	(0.515,0.57]	chr9	387429	12	INTRON	INTRON	PPP1R26	ENSG00000196422.11	ENST00000605286.5:ENST00000604351.5:ENST00000652373.1:ENST00000356818.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	41	2	2.68833	2.971225	3.25412	0.0184931	0.00224554	0.108861	0.0435144
chr11	34070329	34070429	4767838	0	+	0.37	(0.35,0.378]	chr11	440959	66	INTRON	INTRON	CAPRIN1	ENSG00000135387.21	ENST00000341394.9:ENST00000528856.5:ENST00000389645.7:ENST00000534042.5:ENST00000534825.5:ENST00000532820.5:ENST00000530820.5:ENST00000529307.1:ENST00000526494.5:ENST00000532755.5:ENST00000533641.5:ENST00000530008.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	69	2	2.48623	2.9712199999999998	3.45621	0.00938784	0.0011842	0.0817766	0.031662
chr15	56950879	56950979	6032434	0	+	0.46	(0.44,0.476]	chr15	574663	294	INTRON	INTRON	TCF12	ENSG00000140262.18	ENST00000438423.6:ENST00000267811.9:ENST00000333725.10:ENST00000560190.5:ENST00000559609.5:ENST00000558908.5:ENST00000557843.5:ENST00000557947.5:ENST00000561152.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	33	2	1.96602	2.97114	3.97626	0.0426807	0.0300538	0.148082	0.142135
chr3	191449575	191449675	1590423	0	+	0.47	(0.44,0.476]	chr3	164637	236	INTRON	INTRON	ENSG00000223812	ENSG00000223812.8	ENST00000657540.1:ENST00000439804.6:ENST00000663647.1:ENST00000668751.1:ENST00000666632.1:ENST00000664732.1:ENST00000662007.1:ENST00000641158.1:ENST00000664994.1:ENST00000669884.1:ENST00000642133.1:ENST00000656380.1:ENST00000641055.1:ENST00000662578.1:ENST00000661668.1:ENST00000658347.1:ENST00000661029.1:ENST00000651548.2:ENST00000669360.1:ENST00000653490.1:ENST00000656942.1:ENST00000666456.1:ENST00000668276.1:ENST00000671595.1:ENST00000660290.1	lncRNA	lncRNA	lncRNA	lncRNA	2	33	2	1.96602	2.97114	3.97626	0.0426807	0.0300538	0.148082	0.142135
chr20	38092065	38092164	7269471	0	+	0.454545	(0.44,0.476]	chr20	738730	23	UTR3	UTR3:EXON_MRNA:INTRON	RPRD1B	ENSG00000101413.12	ENST00000373433.9:ENST00000618318.1:ENST00000614670.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	168	2	2.64912	2.971085	3.29305	1.22139e-4	6.05237e-5	0.00944529	0.00683137
chr2	118096487	118096556	855264	0	+	0.376812	(0.35,0.378]	chr2	96034	2	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	INSIG2	ENSG00000125629.16	ENST00000411929.5:ENST00000245787.9:ENST00000485520.5:ENST00000471186.5:ENST00000467223.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	85	2	2.85764	2.970975	3.08431	0.0065853	4.6759e-4	0.0701901	0.0195867
chr16	89466571	89466671	6543362	0	-	0.32	(0.28,0.32]	chr16	634281	349	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	154	2	1.92031	2.970965	4.02162	0.0182101	4.96956e-6	0.107833	0.00151644
chr22	36227104	36227203	7584184	0	-	0.535354	(0.515,0.57]	chr22	775960	10	UTR3	UTR3:EXON_MRNA	APOL2	ENSG00000128335.14	ENST00000358502.10:ENST00000249066.10	protein_coding	protein_coding	protein_coding	protein_coding	2	41	2	2.9114	2.970885	3.03037	0.00826019	0.00608732	0.0813266	0.0676501
chr22	21787956	21788056	7560583	0	-	0.37	(0.35,0.378]	chr22	773361	3	SS5_PROX	SS5_PROX:INTRON	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	29	588	2	2.36643	2.97085	3.57527	1.14965e-4	1.99233e-8	0.00967205	5.14924e-5
chr4	87013016	87013115	1994578	0	+	0.414141	(0.408,0.44]	chr4	199041	52	INTRON	INTRON	AFF1	ENSG00000172493.23	ENST00000504956.5:ENST00000395146.9:ENST00000507468.5:ENST00000674009.1:ENST00000503477.5:ENST00000511442.1:ENST00000544085.6:ENST00000307808.10:ENST00000511722.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	141	2	2.75945	2.97084	3.18223	2.60318e-4	1.16206e-4	0.014326	0.00973131
chr11	61366631	61366731	4796309	0	+	0.49	(0.476,0.515]	chr11	444229	5	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	TMEM138	ENSG00000149483.13	ENST00000542946.2:ENST00000689076.1:ENST00000451389.7:ENST00000693557.1:ENST00000692785.1:ENST00000685597.1:ENST00000692667.1:ENST00000540194.6:ENST00000688279.1:ENST00000688430.1:ENST00000278826.11:ENST00000507563.7:ENST00000691720.1:ENST00000689882.1:ENST00000543594.6:ENST00000692219.1:ENST00000686820.1:ENST00000423772.6:ENST00000545420.1:ENST00000381787.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	79	2	2.59108	2.970835	3.35059	0.00196853	0.00171515	0.0402283	0.0381936
chr19	68664	68761	7108506	0	-	0.484536	(0.476,0.515]	chr19	713621	18	INTRON	INTRON	WASH5P	ENSG00000282458.1	ENST00000632506.1:ENST00000633703.1:ENST00000631796.1:ENST00000632089.1:ENST00000631994.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	4	79	2	2.59108	2.970835	3.35059	0.00196853	0.00171515	0.0402283	0.0381936
chr16	28148984	28149083	6467820	0	-	0.373737	(0.35,0.378]	chr16	624533	24	INTRON	INTRON	XPO6	ENSG00000169180.12	ENST00000304658.10:ENST00000565698.5:ENST00000565284.5:ENST00000564337.5:ENST00000570294.5:ENST00000566175.1:ENST00000574435.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	53	2	2.39939	2.970625	3.54186	0.0458078	8.14353e-4	0.149888	0.02604
chr2	169844645	169844745	908315	0	+	0.46	(0.44,0.476]	chr2	100222	162	INTRON	INTRON	UBR3	ENSG00000144357.18	ENST00000272793.11	protein_coding	protein_coding	protein_coding	protein_coding	2	29	2	1.93084	2.9706099999999998	4.01038	0.0443175	0.0433743	0.162302	0.148082
chr21	37442666	37442765	7406988	0	+	0.464646	(0.44,0.476]	chr21	754891	119	INTRON	INTRON	DYRK1A	ENSG00000157540.22	ENST00000646523.1:ENST00000647425.1:ENST00000647188.2:ENST00000647504.1:ENST00000644942.1:ENST00000338785.8:ENST00000643624.1:ENST00000643551.1:ENST00000426672.6:ENST00000398960.7:ENST00000646548.1:ENST00000645424.1:ENST00000643854.1:ENST00000455097.6:ENST00000642309.1:ENST00000645774.1:ENST00000398956.2	protein_coding	protein_coding	protein_coding	protein_coding	2	29	2	1.93084	2.9706099999999998	4.01038	0.0443175	0.0433743	0.162302	0.148082
chr3	15701834	15701934	1622844	0	-	0.46	(0.44,0.476]	chr3	167933	52	INTRON	INTRON	ANKRD28	ENSG00000206560.12	ENST00000399451.6:ENST00000624145.3:ENST00000683139.1:ENST00000412318.5:ENST00000497037.5:ENST00000451422.1:ENST00000498524.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	29	2	1.93084	2.9706099999999998	4.01038	0.0443175	0.0433743	0.162302	0.148082
chr16	84705160	84705260	6409952	0	+	0.39	(0.378,0.408]	chr16	615261	3	SS5_PROX	SS5_PROX:INTRON	USP10	ENSG00000103194.16	ENST00000562743.5:ENST00000540269.6:ENST00000563892.5:ENST00000562092.1:ENST00000569511.5:ENST00000219473.12:ENST00000564566.1:ENST00000570191.5:ENST00000563048.5:ENST00000562283.5:ENST00000563386.5:ENST00000569038.5:ENST00000570053.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	91	2	2.74646	2.970395	3.19433	0.00271684	5.08283e-4	0.0481064	0.020816
chr17	82564048	82564145	6693051	0	+	0.360825	(0.35,0.378]	chr17	654640	1	INTRON	INTRON	FOXK2	ENSG00000141568.21	ENST00000473637.6:ENST00000335255.10:ENST00000527313.6:ENST00000570585.1:ENST00000531030.5:ENST00000526383.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	69	2	2.49643	2.97039	3.44435	0.00752974	0.00179102	0.0773151	0.0380316
chr6	124968394	124968494	2951531	0	+	0.25	[0,0.28]	chr6	277668	46	INTRON	INTRON	RNF217	ENSG00000146373.17	ENST00000521654.7:ENST00000560949.5:ENST00000519971.1:ENST00000519565.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	169	2	2.66365	2.97035	3.27705	8.03523e-4	7.64243e-4	0.0258804	0.0253443
chr22	22308196	22308296	7482927	0	+	0.52	(0.515,0.57]	chr22	763449	1	SS3_PROX	SS3_PROX:INTRON	ENSG00000286129:BMS1P20	ENSG00000286129.1:ENSG00000272779.1	ENST00000652112.1:ENST00000413293.1	lncRNA	lncRNA	lncRNA:transcribed_unprocessed_pseudogene	lncRNA:transcribed_unprocessed_pseudogene	14	228	2	2.82805	2.9703150000000003	3.11258	9.53947e-6	6.70251e-6	0.00223923	0.00194394
chr1	171506469	171506568	253424	0	+	0.373737	(0.35,0.378]	chr1	30096	204	INTRON	INTRON	PRRC2C	ENSG00000117523.18	ENST00000647382.2:ENST00000367742.7:ENST00000476522.5:ENST00000338920.8:ENST00000467601.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	158	2	2.7918	2.97025	3.1487	6.87038e-4	6.00241e-5	0.024008	0.00638274
chr22	49645731	49645831	7602545	0	-	0.46	(0.44,0.476]	chr22	778594	183	INTRON	INTRON	MIR3667HG	ENSG00000188511.13	ENST00000414287.5:ENST00000416411.1:ENST00000689875.1:ENST00000400023.5:ENST00000405854.5	lncRNA	lncRNA	lncRNA	lncRNA	9	174	2	2.88768	2.970125	3.05257	5.10179e-4	8.80914e-6	0.020816	0.00213621
chr2	161391678	161391777	901953	0	+	0.555556	(0.515,0.57]	chr2	99737	1	INTRON	INTRON	PSMD14	ENSG00000115233.12	ENST00000409682.8:ENST00000477232.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	77	2	2.32967	2.97011	3.61055	0.0133671	2.42273e-5	0.0946278	0.00385018
chr7	140919068	140919168	3663677	0	-	0.5	(0.476,0.515]	chr7	340105	685	INTRON	INTRON	BRAF	ENSG00000157764.14	ENST00000496384.7:ENST00000644969.2:ENST00000646891.1:ENST00000644905.1:ENST00000642228.1:ENST00000288602.11:ENST00000646730.1:ENST00000497784.2:ENST00000642272.1:ENST00000642808.1:ENST00000643790.1:ENST00000469930.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	121	2	1.53233	2.97005	4.40777	0.0194937	6.94954e-6	0.109483	0.00187714
chr16	30085219	30085297	6336877	0	+	0.397436	(0.378,0.408]	chr16	607230	3	UTR3	UTR3:EXON_MRNA	PPP4C	ENSG00000149923.14	ENST00000279387.12:ENST00000563200.5:ENST00000566749.5:ENST00000627746.2:ENST00000561610.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	65	2	2.70298	2.9700300000000004	3.23708	0.00365053	0.00325723	0.0535094	0.0524329
chr3	119450808	119450908	1791854	0	-	0.33	(0.32,0.35]	chr3	179935	2	SS5_PROX	SS5_PROX:INTRON	TMEM39A	ENSG00000176142.13	ENST00000319172.10:ENST00000438581.6:ENST00000491685.5:ENST00000486159.5:ENST00000486235.5:ENST00000468676.5:ENST00000490099.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	74	2	2.9451	2.9700249999999997	2.99495	0.011051	0.00102621	0.0873897	0.0294094
chr6	42880457	42880557	2867659	0	+	0.39	(0.378,0.408]	chr6	271373	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	RPL7L1	ENSG00000146223.16	ENST00000493763.7:ENST00000483998.6:ENST00000397415.7:ENST00000304734.9:ENST00000487619.1:ENST00000492836.1:ENST00000497417.1:ENST00000602561.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	15	304	2	2.83621	2.969975	3.10374	2.51553e-5	6.69444e-6	0.00413384	0.00183039
chr8	140982543	140982643	4079890	0	-	0.47	(0.44,0.476]	chr8	370582	279	INTRON	INTRON	PTK2	ENSG00000169398.20	ENST00000696786.1:ENST00000522684.5:ENST00000395218.3:ENST00000521059.5:ENST00000519993.5:ENST00000340930.7:ENST00000524357.5:ENST00000521791.5:ENST00000523067.5:ENST00000520828.5:ENST00000519881.5:ENST00000520892.5:ENST00000523803.5:ENST00000521907.5:ENST00000517453.5:ENST00000520045.5:ENST00000521332.5:ENST00000524040.5:ENST00000523679.1:ENST00000524257.5:ENST00000523797.1:ENST00000519635.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	128	2	2.52598	2.969905	3.41383	4.52247e-4	1.54313e-4	0.0192381	0.0113252
chr12	42362697	42362797	5118595	0	+	0.41	(0.408,0.44]	chr12	482951	11	INTRON	INTRON	PPHLN1	ENSG00000134283.18	ENST00000549190.5:ENST00000337898.10:ENST00000395580.7:ENST00000610488.4:ENST00000619544.4:ENST00000613154.4:ENST00000551723.5:ENST00000552429.5:ENST00000395568.6:ENST00000256678.12:ENST00000358314.12:ENST00000449194.6:ENST00000552761.5:ENST00000551406.5:ENST00000317560.13:ENST00000432191.6:ENST00000552202.5:ENST00000546750.5:ENST00000547847.1:ENST00000552794.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	63	2	2.73941	2.969875	3.20034	0.00398025	0.002744	0.0549214	0.0484022
chr19	5938629	5938729	7125204	0	-	0.48	(0.476,0.515]	chr19	717348	24	INTRON	INTRON	RANBP3	ENSG00000031823.14	ENST00000340578.10:ENST00000439268.6:ENST00000592771.5:ENST00000591092.5:ENST00000034275.12:ENST00000587479.2:ENST00000592621.5:ENST00000590623.5:ENST00000591736.5:ENST00000590953.5:ENST00000588879.5:ENST00000587159.5:ENST00000586117.5:ENST00000589353.5:ENST00000587463.5:ENST00000588010.5:ENST00000591124.5:ENST00000585339.5:ENST00000592133.5:ENST00000591881.5:ENST00000589886.5:ENST00000587263.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	86	2	2.76855	2.969875	3.1712	0.00244302	4.95874e-4	0.0456956	0.0206925
chr11	77819335	77819434	4995965	0	-	0.545455	(0.515,0.57]	chr11	472052	53	INTRON	INTRON	RSF1	ENSG00000048649.14	ENST00000308488.11:ENST00000528095.5:ENST00000440064.2:ENST00000467567.1:ENST00000530604.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	74	2	2.23927	2.969785	3.7003	0.00328621	3.73715e-4	0.0527031	0.0179087
chr7	65305979	65306079	3322326	0	+	0.36	(0.35,0.378]	chr7	308908	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	ENSG00000282381	ENSG00000282381.2	ENST00000687368.1:ENST00000632111.1:ENST00000685802.1	lncRNA	lncRNA	lncRNA	lncRNA	2	53	2	2.72498	2.96977	3.21456	0.0168499	0.00420814	0.11068	0.0572185
chr2	183022559	183022658	1285871	0	-	0.434343	(0.408,0.44]	chr2	135424	189	INTRON	INTRON	NCKAP1	ENSG00000061676.15	ENST00000361354.9:ENST00000360982.2	protein_coding	protein_coding	protein_coding	protein_coding	3	36	2	1.81759	2.96973	4.12187	0.0354689	0.0316273	0.144405	0.137535
chr2	131092713	131092813	1229086	0	-	0.39	(0.378,0.408]	chr2	130995	1	SS5_PROX	SS5_PROX:INTRON	FAM168B	ENSG00000152102.18	ENST00000389915.4:ENST00000409185.5	protein_coding	protein_coding	protein_coding	protein_coding	11	201	2	2.52412	2.969645	3.41517	1.10589e-4	3.59461e-5	0.00892604	0.00508574
chr3	37280961	37281060	1396133	0	+	0.414141	(0.408,0.44]	chr3	146333	45	INTRON	INTRON	GOLGA4	ENSG00000144674.17	ENST00000435830.6:ENST00000444882.5:ENST00000356847.8:ENST00000450863.6:ENST00000361924.7:ENST00000429018.5:ENST00000431105.1:ENST00000419177.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	20	380	2	2.85137	2.96948	3.08759	4.12312e-5	3.59001e-7	0.00544488	3.05003e-4
chr17	37217547	37217646	6761108	0	-	0.50505	(0.476,0.515]	chr17	664773	67	INTRON	INTRON	ACACA	ENSG00000278540.5	ENST00000616317.5:ENST00000614428.4:ENST00000612895.4:ENST00000617649.4:ENST00000614450.4:ENST00000612120.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	34	2	2.10874	2.9694599999999998	3.83018	0.0423385	0.0285608	0.161744	0.12666
chr5	134213401	134213500	2726565	0	-	0.343434	(0.32,0.35]	chr5	256558	69	INTRON	INTRON	PPP2CA	ENSG00000113575.10	ENST00000481195.6:ENST00000522385.1:ENST00000523082.1:ENST00000231504.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	36	2	1.77704	2.96945	4.16186	0.0719969	0.026079	0.187322	0.133676
chr6	5191970	5192069	3049389	0	-	0.343434	(0.32,0.35]	chr6	283832	46	INTRON	INTRON	LYRM4	ENSG00000214113.11	ENST00000330636.9:ENST00000468929.5:ENST00000464010.5:ENST00000463032.5:ENST00000480566.5:ENST00000500576.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	36	2	1.77704	2.96945	4.16186	0.0719969	0.026079	0.187322	0.133676
chr19	11600421	11600521	7018047	0	+	0.32	(0.28,0.32]	chr19	697688	24	INTRON	INTRON	ZNF627	ENSG00000198551.10	ENST00000593279.5:ENST00000585493.5:ENST00000587939.5:ENST00000361113.10:ENST00000588174.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	95	2	2.47671	2.969405	3.4621	0.00327955	0.00218379	0.0527031	0.0417893
chr15	58825704	58825803	6037287	0	+	0.484848	(0.476,0.515]	chr15	574937	35	INTRON	INTRON	MINDY2	ENSG00000128923.11	ENST00000316848.9:ENST00000560289.5:ENST00000559228.6:ENST00000450403.3:ENST00000559745.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	36	2	1.80284	2.96935	4.13586	0.033161	0.031846	0.145899	0.13151
chr7	12392700	12392798	3485329	0	-	0.346939	(0.32,0.35]	chr7	325964	30	INTRON	INTRON	VWDE	ENSG00000146530.15	ENST00000275358.8:ENST00000452576.6:ENST00000521169.5:ENST00000326715.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	147	2	2.78953	2.969345	3.14916	7.22336e-4	2.09109e-4	0.0245475	0.0131276
chr3	138739874	138739973	1830544	0	-	0.393939	(0.378,0.408]	chr3	184029	16	INTRON	INTRON	PIK3CB	ENSG00000051382.9	ENST00000674063.1:ENST00000289153.6:ENST00000477593.5:ENST00000462898.5:ENST00000462294.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	78	2	2.46509	2.9691549999999998	3.47322	0.00287152	0.00147803	0.0494641	0.0348908
chr2	61364142	61364241	1129477	0	-	0.424242	(0.408,0.44]	chr2	121448	131	INTRON	INTRON	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000453133.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	103	2	2.74759	2.96912	3.19065	0.00102152	3.2984e-4	0.029231300000000002	0.0161352
chr1	32390686	32390786	415158	0	-	0.49	(0.476,0.515]	chr1	50088	34	INTRON	INTRON	BSDC1	ENSG00000160058.19	ENST00000455895.7:ENST00000444377.5:ENST00000341071.11:ENST00000526031.5:ENST00000419121.6:ENST00000446293.6:ENST00000373520.8:ENST00000527513.5:ENST00000527163.5:ENST00000530485.1:ENST00000474414.5:ENST00000530876.5:ENST00000530753.1:ENST00000533084.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	84	2	2.96824	2.9690200000000004	2.9698	0.00124841	9.98194e-4	0.0323336	0.0290732
chr1	36225563	36225663	72942	0	+	0.41	(0.408,0.44]	chr1	9370	1	SS5_PROX	SS5_PROX:INTRON	THRAP3	ENSG00000054118.15	ENST00000469141.6:ENST00000648638.1:ENST00000354618.10	protein_coding	protein_coding	protein_coding	protein_coding	7	130	2	2.28219	2.9690149999999997	3.65584	0.00215449	2.38988e-5	0.0417866	0.00383194
chr6	119183418	119183518	3204145	0	-	0.27	[0,0.28]	chr6	298272	26	INTRON	INTRON	MAN1A1	ENSG00000111885.7	ENST00000368468.4	protein_coding	protein_coding	protein_coding	protein_coding	3	92	2	2.41169	2.968815	3.52594	0.0122872	0.00224145	0.0970106	0.0423923
chr22	19515148	19515248	7477202	0	+	0.47	(0.44,0.476]	chr22	762465	1	SS5_PROX	SS5_PROX:INTRON	CDC45	ENSG00000093009.11	ENST00000407835.6:ENST00000437685.6:ENST00000438587.6:ENST00000672837.1:ENST00000263201.7:ENST00000404724.7:ENST00000671972.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	180	2	2.87199	2.9687599999999996	3.06553	1.35514e-4	5.61782e-5	0.0100405	0.00655354
chr6	167835415	167835515	3034422	0	+	0.38	(0.378,0.408]	chr6	282711	71	INTRON	INTRON	AFDN	ENSG00000130396.21	ENST00000683244.1:ENST00000400825.8:ENST00000351017.9:ENST00000344191.8:ENST00000392112.5:ENST00000392108.7:ENST00000400824.8:ENST00000400822.7:ENST00000447894.6:ENST00000366809.6:ENST00000366806.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	50	2	2.46373	2.96875	3.47377	0.0382831	0.00103087	0.141795	0.0294094
chr1	246568684	246568784	350005	0	+	0.48	(0.476,0.515]	chr1	40488	15	INTRON	INTRON	CNST	ENSG00000162852.14	ENST00000483271.1:ENST00000366513.9:ENST00000366512.7:ENST00000366511.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	82	2	1.80284	2.96859	4.13434	0.033161	5.88252e-5	0.145899	0.00669884
chr16	74602461	74602561	6525286	0	-	0.64	(0.57,1]	chr16	631842	393	INTRON	INTRON	GLG1	ENSG00000090863.12	ENST00000205061.9:ENST00000422840.7:ENST00000447066.6:ENST00000562090.5:ENST00000567951.5:ENST00000627032.2:ENST00000565260.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	64	2	2.86696	2.96858	3.0702	2.88184e-4	8.16863e-5	0.0150627	0.00810831
chr16	81447138	81447238	6405020	0	+	0.59	(0.57,1]	chr16	615026	12	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8	protein_coding	protein_coding	protein_coding	protein_coding	2	27	2	2.53383	2.96858	3.40333	0.02547	9.20604e-4	0.12011	0.0278392
chr5	66150768	66150868	2372552	0	+	0.27	[0,0.28]	chr5	228649	52	INTRON	INTRON	SREK1	ENSG00000153914.16	ENST00000521691.5:ENST00000612404.4:ENST00000523851.1:ENST00000334121.11:ENST00000520058.1:ENST00000520953.5:ENST00000522912.5:ENST00000524111.5:ENST00000380918.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	90	2	2.8193	2.9685	3.1177	0.00849154	0.00285248	0.0778788	0.0494641
chr10	72583070	72583170	4646501	0	-	0.35	(0.32,0.35]	chr10	427462	159	INTRON	INTRON	MICU1	ENSG00000107745.20	ENST00000361114.10:ENST00000642044.1:ENST00000635239.1:ENST00000604238.2:ENST00000603011.5:ENST00000604025.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	75	2	2.84812	2.96838	3.08864	0.0147575	6.64579e-4	0.0983813	0.0233423
chr16	8102722	8102822	6441536	0	-	0.42	(0.408,0.44]	chr16	620351	951	INTRON	INTRON	ENSG00000260289	ENSG00000260289.2	ENST00000670665.1:ENST00000654046.1:ENST00000567103.2	lncRNA	lncRNA	lncRNA	lncRNA	3	64	2	2.57295	2.9683650000000004	3.36378	0.00640423	0.0016048	0.0694534	0.0367961
chr17	30732708	30732808	6589812	0	+	0.42	(0.408,0.44]	chr17	640845	1	SS5_PROX	SS5_PROX:INTRON	SUZ12P1	ENSG00000264538.7	ENST00000578070.5:ENST00000579526.5:ENST00000690405.1:ENST00000497969.6:ENST00000578195.6	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	9	169	2	2.65083	2.968245	3.28566	1.20597e-4	6.60258e-5	0.00938389	0.0071649
chr1	235266948	235267048	663250	0	-	0.44	(0.408,0.44]	chr1	78552	58	INTRON	INTRON	ARID4B	ENSG00000054267.22	ENST00000349213.7:ENST00000366603.6:ENST00000264183.9:ENST00000421364.5:ENST00000491632.5:ENST00000418304.1:ENST00000466653.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	29	2	1.93243	2.96814	4.00385	0.0454568	0.0441194	0.162255	0.149888
chr11	11938672	11938772	4736543	0	+	0.43	(0.408,0.44]	chr11	438700	3	SS5_PROX	SS5_PROX:INTRON	USP47	ENSG00000170242.19	ENST00000339865.9:ENST00000527733.7:ENST00000399455.2:ENST00000525078.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	29	2	1.93243	2.96814	4.00385	0.0454568	0.0441194	0.162255	0.149888
chr12	70261575	70261675	5166613	0	+	0.41	(0.408,0.44]	chr12	489374	169	INTRON	INTRON	CNOT2	ENSG00000111596.14	ENST00000547780.5:ENST00000418359.7:ENST00000552319.5:ENST00000550160.5:ENST00000551661.5:ENST00000551132.5:ENST00000553078.5:ENST00000548021.5:ENST00000550641.6:ENST00000229195.8:ENST00000552915.5:ENST00000549443.5:ENST00000548741.5:ENST00000552483.5:ENST00000552422.5:ENST00000551179.1:ENST00000547321.5:ENST00000553020.5:ENST00000548159.5:ENST00000549750.5:ENST00000551043.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	29	2	1.93243	2.96814	4.00385	0.0454568	0.0441194	0.162255	0.149888
chr12	131735726	131735826	5249340	0	+	0.43	(0.408,0.44]	chr12	499173	69	INTRON	INTRON	SFSWAP	ENSG00000061936.10	ENST00000261674.9:ENST00000538548.5:ENST00000535236.5:ENST00000541286.5:ENST00000535202.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	29	2	1.93243	2.96814	4.00385	0.0454568	0.0441194	0.162255	0.149888
chr16	11704050	11704150	6444807	0	-	0.42	(0.408,0.44]	chr16	620807	3	SS3_PROX	SS3_PROX:INTRON	TXNDC11	ENSG00000153066.13	ENST00000283033.10:ENST00000356957.7:ENST00000575591.1:ENST00000576969.5:ENST00000571882.1:ENST00000573174.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	29	2	1.93243	2.96814	4.00385	0.0454568	0.0441194	0.162255	0.149888
chr2	31887033	31887132	1089872	0	-	0.424242	(0.408,0.44]	chr2	116867	32	INTRON	INTRON	MEMO1:DPY30	ENSG00000162959.14:ENSG00000162961.14	ENST00000295065.9:ENST00000446765.5:ENST00000404530.6:ENST00000379383.7:ENST00000490459.5:ENST00000426310.6:ENST00000422936.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	29	2	1.93243	2.96814	4.00385	0.0454568	0.0441194	0.162255	0.149888
chr20	63198223	63198322	7362600	0	-	0.424242	(0.408,0.44]	chr20	751224	11	INTRON	INTRON	YTHDF1	ENSG00000149658.18	ENST00000370339.8:ENST00000370334.4	protein_coding	protein_coding	protein_coding	protein_coding	2	29	2	1.93243	2.96814	4.00385	0.0454568	0.0441194	0.162255	0.149888
chr10	35519307	35519406	4426341	0	+	0.383838	(0.378,0.408]	chr10	407937	23	INTRON	INTRON	CCNY	ENSG00000108100.18	ENST00000374706.5:ENST00000493157.6:ENST00000374704.8:ENST00000265375.13:ENST00000339497.7:ENST00000492478.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	36	2	1.72045	2.9680400000000002	4.21563	0.0424671	0.0315429	0.161763	0.13151
chr11	65267768	65267868	4804774	0	+	0.39	(0.378,0.408]	chr11	446346	2	SS5_PROX	SS5_PROX:INTRON	POLA2	ENSG00000014138.9	ENST00000527850.5:ENST00000532469.1:ENST00000265465.8:ENST00000532391.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	36	2	1.72045	2.9680400000000002	4.21563	0.0424671	0.0315429	0.161763	0.13151
chr14	52667782	52667880	5894791	0	-	0.295918	(0.28,0.32]	chr14	559820	9	INTRON	INTRON	ERO1A	ENSG00000197930.13	ENST00000395686.8:ENST00000554019.5:ENST00000556039.5:ENST00000629528.2:ENST00000554251.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	34	2	1.90263	2.9680400000000002	4.03345	0.0704058	0.0503272	0.184298	0.17488
chr15	49221940	49222038	6019635	0	+	0.306122	(0.28,0.32]	chr15	573707	43	INTRON	INTRON	GALK2	ENSG00000156958.15	ENST00000559883.5:ENST00000559963.5:ENST00000327171.7:ENST00000560654.5:ENST00000558775.5:ENST00000559040.1:ENST00000396509.6:ENST00000558956.5:ENST00000559208.5:ENST00000560031.6:ENST00000560119.5:ENST00000558145.5:ENST00000544523.5:ENST00000560138.5:ENST00000559423.5:ENST00000559454.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	34	2	1.90263	2.9680400000000002	4.03345	0.0704058	0.0503272	0.184298	0.17488
chr5	119104379	119104479	2460100	0	+	0.39	(0.378,0.408]	chr5	235600	2	INTRON	INTRON	DMXL1	ENSG00000172869.15	ENST00000539542.6:ENST00000503802.5:ENST00000311085.8:ENST00000510924.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	36	2	1.72045	2.9680400000000002	4.21563	0.0424671	0.0315429	0.161763	0.13151
chr1	25468762	25468861	48331	0	+	0.383838	(0.378,0.408]	chr1	5949	95	INTRON	INTRON	MACO1	ENSG00000204178.11	ENST00000399766.7:ENST00000374343.5:ENST00000647928.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	50	2	2.78705	2.9679849999999997	3.14892	0.0135539	0.00499984	0.101363	0.0617433
chr1	211672582	211672682	630492	0	-	0.29	(0.28,0.32]	chr1	74604	9	INTRON	INTRON	NEK2	ENSG00000117650.13	ENST00000540251.5:ENST00000366999.9:ENST00000366998.4	protein_coding	protein_coding	protein_coding	protein_coding	3	44	2	1.90249	2.96797	4.03345	0.0704058	0.0261803	0.184298	0.133676
chr1	44754412	44754491	92462	0	+	0.506329	(0.476,0.515]	chr1	12285	2	SS3_PROX	SS3_PROX:INTRON	KIF2C	ENSG00000142945.13	ENST00000452259.5:ENST00000493027.5:ENST00000372224.9:ENST00000455186.5:ENST00000372217.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	29	2	1.91817	2.9679699999999998	4.01777	0.0459211	0.0411361	0.164984	0.1451
chr11	87318980	87319066	4845634	0	+	0.5	(0.476,0.515]	chr11	451916	3	SS3_PROX	SS3_PROX:INTRON	TMEM135	ENSG00000166575.17	ENST00000340353.11:ENST00000305494.6:ENST00000532959.5:ENST00000531643.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	29	2	1.91817	2.9679699999999998	4.01777	0.0459211	0.0411361	0.164984	0.1451
chr12	53622757	53622857	5328982	0	-	0.49	(0.476,0.515]	chr12	508405	214	INTRON	INTRON	ATF7	ENSG00000170653.19	ENST00000548446.6:ENST00000420353.7:ENST00000456903.8:ENST00000588232.5:ENST00000551480.2:ENST00000588078.5:ENST00000591397.1:ENST00000548118.6:ENST00000589726.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	29	2	1.91817	2.9679699999999998	4.01777	0.0459211	0.0411361	0.164984	0.1451
chr13	40987389	40987489	5577211	0	-	0.48	(0.476,0.515]	chr13	533200	46	INTRON	INTRON	ELF1	ENSG00000120690.16	ENST00000239882.7:ENST00000405737.2	protein_coding	protein_coding	protein_coding	protein_coding	2	29	2	1.91817	2.9679699999999998	4.01777	0.0459211	0.0411361	0.164984	0.1451
chr17	19929906	19930006	6741600	0	-	0.49	(0.476,0.515]	chr17	661883	50	INTRON	INTRON	AKAP10	ENSG00000108599.15	ENST00000225737.11:ENST00000578898.1:ENST00000395536.7:ENST00000583951.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	29	2	1.91817	2.9679699999999998	4.01777	0.0459211	0.0411361	0.164984	0.1451
chr3	172049743	172049843	1559645	0	+	0.5	(0.476,0.515]	chr3	161527	24	INTRON	INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000421757.5:ENST00000469491.5:ENST00000336824.8:ENST00000423424.5:ENST00000416957.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	29	2	1.91817	2.9679699999999998	4.01777	0.0459211	0.0411361	0.164984	0.1451
chr8	47953219	47953319	3945690	0	-	0.47	(0.44,0.476]	chr8	361952	2	SS5_PROX	SS5_PROX:INTRON	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7	protein_coding	protein_coding	protein_coding	protein_coding	3	63	2	2.42996	2.9679	3.50584	0.0104804	8.66138e-4	0.0855777	0.0266729
chr12	62325074	62325173	5150206	0	+	0.292929	(0.28,0.32]	chr12	487327	31	INTRON	INTRON	USP15	ENSG00000135655.16	ENST00000353364.7:ENST00000550632.5:ENST00000312635.10:ENST00000280377.10:ENST00000549237.5:ENST00000546694.1:ENST00000552997.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	59	2	2.62686	2.9678950000000004	3.30893	0.0289217	0.00260504	0.1274	0.0470772
chr17	27556158	27556257	6581766	0	+	0.313131	(0.28,0.32]	chr17	639672	51	INTRON	INTRON	KSR1	ENSG00000141068.15	ENST00000644974.2:ENST00000583370.5:ENST00000398988.7:ENST00000268763.10:ENST00000509603.6:ENST00000582311.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	59	2	2.62686	2.9678950000000004	3.30893	0.0289217	0.00260504	0.1274	0.0470772
chr21	10337776	10337875	7427398	0	-	0.383838	(0.378,0.408]	chr21	757672	10	EXON_LNCRNA	EXON_LNCRNA:INTRON	ENSG00000277693	ENSG00000277693.2	ENST00000622592.1:ENST00000616952.1:ENST00000667012.1	lncRNA	lncRNA	lncRNA	lncRNA	3	66	2	2.55607	2.967885	3.3797	0.00704647	0.00154501	0.0718189	0.0362716
chr7	12350973	12351072	3484881	0	-	0.373737	(0.35,0.378]	chr7	325854	47	INTRON	INTRON	VWDE	ENSG00000146530.15	ENST00000275358.8:ENST00000452576.6:ENST00000521169.5:ENST00000649524.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	104	2	2.0653	2.96786	3.87042	0.00473276	2.9524e-4	0.0633849	0.0159581
chr2	241686465	241686553	1349439	0	-	0.613636	(0.57,1]	chr2	141822	2	SS5_PROX	SS5_PROX:INTRON	DTYMK	ENSG00000168393.13	ENST00000400770.6:ENST00000305784.7:ENST00000445261.5:ENST00000432348.5:ENST00000493095.1:ENST00000464603.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	16	156	2	2.6424	2.967835	3.29327	1.3107e-5	1.38374e-7	0.00286967	1.68566e-4
chr12	132575538	132575633	5251667	0	+	0.589474	(0.57,1]	chr12	499512	6	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1:ENST00000542306.5:ENST00000537804.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	27	2	2.66801	2.9678050000000002	3.2676	0.0169968	0.00176203	0.110899	0.0376652
chr5	104289675	104289775	2443312	0	+	0.25	[0,0.28]	chr5	234410	1844	INTRON	INTRON	LINC02163	ENSG00000251026.2	ENST00000662211.1:ENST00000666145.1	lncRNA	lncRNA	lncRNA	lncRNA	3	92	2	2.59706	2.9678	3.33854	0.00894925	0.00278022	0.0799922	0.0488412
chr16	81447039	81447138	6405019	0	+	0.575758	(0.57,1]	chr16	615026	11	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8	protein_coding	protein_coding	protein_coding	protein_coding	9	79	2	2.10745	2.9676400000000003	3.82783	0.00123383	3.01424e-6	0.0322271	0.00111586
chrX	44884986	44885086	7648720	0	+	0.34	(0.32,0.35]	chrX	782726	106	INTRON	INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000675440.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000621147.5:ENST00000475233.1:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	189	2	2.52467	2.96753	3.41039	0.00164175	7.00098e-6	0.0369207	0.00187943
chr1	1672129	1672226	360752	0	-	0.525773	(0.515,0.57]	chr1	41997	1	INTRON	INTRON	SLC35E2B	ENSG00000189339.12	ENST00000614300.4:ENST00000617444.5:ENST00000611123.1:ENST00000481276.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	120	2	2.14437	2.96751	3.79065	0.00207895	7.49445e-6	0.0411801	0.00195238
chr9	78004221	78004321	4271672	0	-	0.39	(0.378,0.408]	chr9	392880	815	INTRON	INTRON	GNAQ	ENSG00000156052.11	ENST00000286548.9:ENST00000411677.1	protein_coding	protein_coding	protein_coding	protein_coding	4	78	2	2.53602	2.96737	3.39872	0.0020933	0.0019852	0.0424943	0.0404516
chr1	147260807	147260904	212405	0	+	0.42268	(0.408,0.44]	chr1	23512	5	INTRON	INTRON	CHD1L	ENSG00000131778.20	ENST00000652587.1:ENST00000652616.1:ENST00000652494.1:ENST00000651207.1:ENST00000650721.1:ENST00000651226.1:ENST00000652161.1:ENST00000651510.1:ENST00000361293.10:ENST00000652278.1:ENST00000369259.4:ENST00000467213.5:ENST00000369258.8:ENST00000622533.4:ENST00000651410.1:ENST00000652486.1:ENST00000652346.1:ENST00000651407.1:ENST00000650828.1:ENST00000651070.1:ENST00000650714.1:ENST00000651420.1:ENST00000652357.1:ENST00000488864.5:ENST00000652188.1:ENST00000651820.1:ENST00000651231.1:ENST00000651206.1:ENST00000431239.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	45	2	1.40374	2.96731	4.53088	0.0721345	0.00669275	0.187433	0.0738715
chr22	16602415	16602515	7473364	0	+	0.63	(0.57,1]	chr22	761971	2	SS5_PROX	SS5_PROX:INTRON	TPTEP1:ENSG00000283633	ENSG00000100181.22:ENSG00000283633.1	ENST00000558085.6:ENST00000400593.6:ENST00000592918.5:ENST00000592107.5:ENST00000426585.5:ENST00000591299.1	lncRNA	lncRNA	lncRNA:transcribed_unprocessed_pseudogene	lncRNA:processed_transcript	11	110	2	2.90524	2.96727	3.0293	2.40978e-5	3.49002e-6	0.00403357	0.00120947
chr20	35708292	35708392	7336195	0	-	0.3	(0.28,0.32]	chr20	747408	3	SS3_PROX	SS3_PROX:INTRON	RBM39	ENSG00000131051.24	ENST00000253363.11:ENST00000639702.1:ENST00000656873.1:ENST00000463004.5:ENST00000361162.10:ENST00000461283.5:ENST00000403542.6:ENST00000338163.10:ENST00000528062.7:ENST00000429968.5:ENST00000444878.5:ENST00000665058.1:ENST00000476806.5:ENST00000495293.5:ENST00000492779.5:ENST00000465158.5:ENST00000448303.5:ENST00000470563.5:ENST00000615771.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	178	2	2.49865	2.9672	3.43575	0.00216019	2.68033e-5	0.0417866	0.00408175
chr20	38005115	38005212	7341038	0	-	0.319588	(0.28,0.32]	chr20	748175	20	INTRON	INTRON	TTI1	ENSG00000101407.13	ENST00000373448.6:ENST00000373447.8:ENST00000449821.1	protein_coding	protein_coding	protein_coding	protein_coding	3	80	2	2.4721	2.9671000000000003	3.4621	0.00906617	0.00218379	0.0854289	0.0417893
chr9	37338694	37338794	4119854	0	+	0.3	(0.28,0.32]	chr9	375429	105	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000461038.5:ENST00000488607.5:ENST00000463625.6:ENST00000497924.5:ENST00000481507.5:ENST00000496099.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	80	2	2.4721	2.9671000000000003	3.4621	0.00906617	0.00218379	0.0854289	0.0417893
chr17	8173253	8173353	6719918	0	-	0.33	(0.32,0.35]	chr17	659264	9	UTR3	UTR3:EXON_MRNA	TMEM107	ENSG00000179029.15	ENST00000437139.7:ENST00000449985.6	protein_coding	protein_coding	protein_coding	protein_coding	5	146	2	2.45306	2.96709	3.48112	0.00916394	3.77209e-5	0.0855292	0.00523787
chr19	21734484	21734583	7158967	0	-	0.242424	[0,0.28]	chr19	723706	61	INTRON	INTRON	ZNF100	ENSG00000197020.12	ENST00000358296.11:ENST00000305570.10:ENST00000594401.1	protein_coding	protein_coding	protein_coding	protein_coding	2	67	2	2.59548	2.96701	3.33854	0.0346067	0.00278022	0.136649	0.0488412
chr10	125086391	125086491	4713593	0	-	0.47	(0.44,0.476]	chr10	434897	469	INTRON	INTRON	CTBP2	ENSG00000175029.17	ENST00000337195.9:ENST00000411419.6:ENST00000494626.6:ENST00000531469.5:ENST00000460976.5:ENST00000476817.1:ENST00000530884.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	66	2	2.848	2.966955	3.08591	0.00481262	0.00215274	0.0638089	0.0417866
chr3	107580634	107580734	1470324	0	+	0.47	(0.44,0.476]	chr3	154137	539	INTRON	INTRON	BBX	ENSG00000114439.19	ENST00000415149.6:ENST00000402543.5:ENST00000325805.13:ENST00000485939.5:ENST00000427402.5:ENST00000416476.6:ENST00000454540.5:ENST00000449335.5:ENST00000431630.5:ENST00000458458.5:ENST00000456817.5:ENST00000456419.5:ENST00000402163.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	47	2	2.67572	2.9668650000000003	3.25801	0.0212064	0.00248185	0.113017	0.0460771
chr1	29033345	29033445	60154	0	+	0.37	(0.35,0.378]	chr1	7685	1	SS5_PROX	SS5_PROX:INTRON	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000647918.1:ENST00000646800.1:ENST00000644342.1:ENST00000646189.1:ENST00000482464.6:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000646260.1:ENST00000373798.5:ENST00000644600.1:ENST00000649674.1:ENST00000643173.1:ENST00000343067.9:ENST00000644780.1:ENST00000650265.1:ENST00000648181.1:ENST00000643604.1:ENST00000648891.1:ENST00000373797.2:ENST00000349460.9:ENST00000645184.1:ENST00000645111.1:ENST00000643302.1:ENST00000645999.1:ENST00000642643.1:ENST00000636666.1:ENST00000644848.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	73	2	2.66547	2.966755	3.26804	0.0233639	2.47065e-4	0.118323	0.0139149
chr16	70402392	70402491	6511097	0	-	0.323232	(0.32,0.35]	chr16	630689	9	INTRON	INTRON	ST3GAL2	ENSG00000157350.13	ENST00000342907.3:ENST00000566097.1:ENST00000561708.1:ENST00000567586.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	100	2	2.18299	2.96675	3.75051	0.00505063	5.8762e-4	0.0646039	0.0224695
chr11	28131052	28131152	4752385	0	+	0.38	(0.378,0.408]	chr11	440090	53	INTRON	INTRON	METTL15	ENSG00000169519.21	ENST00000406787.7:ENST00000451385.6:ENST00000407364.8:ENST00000532947.2:ENST00000634627.1:ENST00000634973.1:ENST00000303459.10:ENST00000634721.1:ENST00000634762.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	42	2	1.6165	2.966745	4.31699	0.0374185	0.0250408	0.155878	0.12011
chr1	32194487	32194573	64315	0	+	0.395349	(0.378,0.408]	chr1	8203	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TXLNA	ENSG00000084652.16	ENST00000373610.8:ENST00000373609.1	protein_coding	protein_coding	protein_coding	protein_coding	3	67	2	2.35527	2.9667399999999997	3.57821	0.0121511	9.60401e-4	0.0963966	0.0282401
chr1	61236582	61236682	128939	0	+	0.27	[0,0.28]	chr1	14788	14	INTRON	INTRON	NFIA	ENSG00000162599.17	ENST00000371191.5:ENST00000664495.1:ENST00000476646.5:ENST00000407417.7:ENST00000479364.1:ENST00000371189.8:ENST00000670151.1:ENST00000664149.1:ENST00000662015.1:ENST00000403491.8:ENST00000371187.7:ENST00000485903.6:ENST00000371185.6:ENST00000371184.6:ENST00000663597.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	67	2	2.95729	2.9667250000000003	2.97616	0.0128425	0.0101824	0.0926667	0.089002
chr17	65053001	65053101	6818384	0	-	0.36	(0.35,0.378]	chr17	674130	1	SS5_PROX	SS5_PROX:INTRON	GNA13	ENSG00000120063.10	ENST00000439174.7:ENST00000541118.1	protein_coding	protein_coding	protein_coding	protein_coding	2	51	2	2.66547	2.966705	3.26794	0.0233639	0.00257067	0.118323	0.0466761
chr17	16460692	16460792	6562867	0	+	0.39	(0.378,0.408]	chr17	637926	4	SS3_PROX	SS3_PROX:INTRON	SNHG29	ENSG00000175061.19	ENST00000584177.5:ENST00000665646.1:ENST00000660419.1:ENST00000668333.1:ENST00000664939.1:ENST00000583400.7:ENST00000669136.1:ENST00000580770.5:ENST00000581718.6:ENST00000579473.6:ENST00000581361.5:ENST00000692724.1:ENST00000689691.1:ENST00000686699.1:ENST00000472367.5:ENST00000483588.2:ENST00000478103.6:ENST00000658943.1	lncRNA	lncRNA	lncRNA	lncRNA	4	82	2	2.92764	2.96666	3.00568	0.00811866	3.01906e-4	0.0766625	0.0155054
chr19	5606227	5606326	7124184	0	-	0.393939	(0.378,0.408]	chr19	717006	9	INTRON	INTRON	SAFB2	ENSG00000130254.12	ENST00000252542.9:ENST00000591123.5:ENST00000592599.5:ENST00000591101.5:ENST00000591310.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	49	2	2.60296	2.96661	3.33026	0.0267851	0.00189824	0.123349	0.0402736
chr1	9727932	9728030	18670	0	+	0.5	(0.476,0.515]	chr1	1792	10	UTR3	UTR3:EXON_MRNA	PIK3CD	ENSG00000171608.17	ENST00000377346.9:ENST00000628140.2	protein_coding	protein_coding	protein_coding	protein_coding	3	63	2	2.58253	2.9665600000000003	3.35059	0.00600101	0.00171515	0.0674604	0.0381936
chr22	19959210	19959309	7477579	0	+	0.515152	(0.476,0.515]	chr22	762571	49	INTRON	INTRON	COMT	ENSG00000093010.15	ENST00000676678.1:ENST00000403184.5:ENST00000361682.11:ENST00000403710.5:ENST00000407537.5:ENST00000467943.5:ENST00000678868.1:ENST00000678769.1:ENST00000428707.2:ENST00000412786.5:ENST00000207636.9:ENST00000406520.7:ENST00000678255.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	63	2	2.58253	2.9665600000000003	3.35059	0.00600101	0.00171515	0.0674604	0.0381936
chr3	48185378	48185469	1687806	0	-	0.450549	(0.44,0.476]	chr3	172354	3	INTRON	INTRON	CDC25A	ENSG00000164045.12	ENST00000302506.8:ENST00000351231.7:ENST00000443342.5:ENST00000437972.1	protein_coding	protein_coding	protein_coding	protein_coding	2	47	2	2.9586	2.966555	2.97451	0.00853825	0.00758318	0.0780043	0.0773151
chr4	67617013	67617112	2153587	0	-	0.232323	[0,0.28]	chr4	212021	45	UTR3	UTR3:EXON_MRNA	UBA6	ENSG00000033178.13	ENST00000322244.10	protein_coding	protein_coding	protein_coding	protein_coding	4	123	2	2.59706	2.966555	3.33605	0.00894925	3.05093e-4	0.0799922	0.0155972
chr4	68346358	68346457	2154852	0	-	0.454545	(0.44,0.476]	chr4	212290	19	INTRON	INTRON	YTHDC1	ENSG00000083896.13	ENST00000344157.9:ENST00000355665.7:ENST00000579690.5:ENST00000510746.1	protein_coding	protein_coding	protein_coding	protein_coding	2	47	2	2.9586	2.966555	2.97451	0.00853825	0.00758318	0.0780043	0.0773151
chr5	54061263	54061363	2618418	0	-	0.51	(0.476,0.515]	chr5	248837	131	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	48	2	2.48527	2.9665549999999996	3.44784	0.03496	0.00113238	0.13747500000000001	0.0308465
chr19	2205539	2205638	6996596	0	+	0.363636	(0.35,0.378]	chr19	693473	24	INTRON	INTRON	DOT1L	ENSG00000104885.19	ENST00000398665.8:ENST00000686010.1	protein_coding	protein_coding	protein_coding	protein_coding	6	104	2	2.03655	2.96654	3.89653	0.00535994	2.61932e-4	0.0663076	0.0149313
chr1	40178841	40178940	80139	0	+	0.525253	(0.515,0.57]	chr1	10407	10	INTRON	INTRON	RLF	ENSG00000117000.9	ENST00000372771.5	protein_coding	protein_coding	protein_coding	protein_coding	4	65	2	2.57697	2.96653	3.35609	0.00174131	0.00153959	0.0375363	0.0362709
chr1	17410745	17410842	384687	0	-	0.587629	(0.57,1]	chr1	45443	3	INTRON	INTRON	RCC2	ENSG00000179051.14	ENST00000375436.9:ENST00000375433.3	protein_coding	protein_coding	protein_coding	protein_coding	4	41	2	2.37366	2.96643	3.5592	0.00373392	4.21089e-4	0.0535844	0.0183576
chr17	48560941	48561041	6790871	0	-	0.54	(0.515,0.57]	chr17	669976	41	INTRON	INTRON	HOXB3	ENSG00000120093.12	ENST00000498678.6:ENST00000472863.5:ENST00000311626.8:ENST00000490677.1:ENST00000460160.5:ENST00000489475.5:ENST00000476342.1:ENST00000465120.3	protein_coding	protein_coding	protein_coding	protein_coding	4	65	2	2.27116	2.966335	3.66151	0.00601759	4.49566e-4	0.0700813	0.0196044
chr1	22058597	22058697	42260	0	+	0.49	(0.476,0.515]	chr1	5072	24	INTRON	INTRON	ENSG00000289694:CDC42	ENSG00000289694.1:ENSG00000070831.18	ENST00000695855.1:ENST00000695856.1:ENST00000344548.8:ENST00000400259.5:ENST00000667384.2:ENST00000411827.2:ENST00000695858.1:ENST00000695857.1:ENST00000315554.14:ENST00000695859.1:ENST00000498236.1:ENST00000656825.1:ENST00000651171.1:ENST00000652582.1:ENST00000695860.1:ENST00000695796.1:ENST00000695797.1:ENST00000662562.2:ENST00000695798.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	101	2	2.72421	2.96621	3.20821	0.00107964	3.05489e-4	0.0302522	0.0155972
chr11	31482631	31482730	4938970	0	-	0.383838	(0.378,0.408]	chr11	462597	45	INTRON	INTRON	IMMP1L	ENSG00000148950.11	ENST00000532287.6:ENST00000534812.5:ENST00000526776.5:ENST00000278200.5:ENST00000648582.1:ENST00000533642.1:ENST00000527184.5:ENST00000528161.5:ENST00000532624.5:ENST00000529749.5:ENST00000530023.5:ENST00000531693.1:ENST00000532668.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	65	2	2.82967	2.966205	3.10274	0.00586642	0.00189968	0.0668095	0.0402736
chr10	5893396	5893494	4385209	0	+	0.408163	(0.378,0.408]	chr10	404622	19	INTRON	INTRON	FBH1	ENSG00000134452.20	ENST00000397269.7:ENST00000362091.9:ENST00000470089.5:ENST00000462507.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	49	2	2.92665	2.966165	3.00568	0.0086017	0.00811866	0.083729	0.0766625
chr9	130758154	130758254	4214306	0	+	0.46	(0.44,0.476]	chr9	386427	433	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000393293.4	protein_coding	protein_coding	protein_coding	protein_coding	10	192	2	2.4676	2.96614	3.46468	5.32996e-4	2.99548e-6	0.0213454	0.00111586
chr1	162563335	162563434	238335	0	+	0.414141	(0.408,0.44]	chr1	28696	9	INTRON	INTRON	UAP1	ENSG00000117143.14	ENST00000367925.6:ENST00000367926.9	protein_coding	protein_coding	protein_coding	protein_coding	9	179	2	2.77322	2.9660149999999996	3.15881	1.08448e-4	4.54026e-5	0.00880907	0.00583057
chr2	99408312	99408403	1189038	0	-	0.340659	(0.32,0.35]	chr2	127616	3	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	REV1	ENSG00000135945.10	ENST00000393445.7:ENST00000258428.8:ENST00000413697.5:ENST00000482595.5:ENST00000465835.5:ENST00000438366.1:ENST00000477121.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	208	2	2.7607	2.96598	3.17126	5.62541e-4	1.30229e-5	0.0219303	0.0026712
chr1	35967575	35967673	71510	0	+	0.459184	(0.44,0.476]	chr1	9144	1	INTRON	INTRON	AGO3	ENSG00000126070.20	ENST00000324350.9:ENST00000397828.3:ENST00000634486.1:ENST00000373191.9:ENST00000246314.10:ENST00000491443.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	63	2	2.9044	2.965955	3.02751	0.00715968	0.00132926	0.0723634	0.0335085
chr6	34592794	34592894	3085177	0	-	0.35	(0.32,0.35]	chr6	288673	18	INTRON	INTRON	ILRUN	ENSG00000196821.10	ENST00000374026.7:ENST00000374023.8:ENST00000374021.1	protein_coding	protein_coding	protein_coding	protein_coding	4	89	2	1.92705	2.96584	4.00463	0.0267365	9.86358e-5	0.123349	0.00835539
chr3	47829334	47829434	1420241	0	+	0.44	(0.408,0.44]	chr3	149233	2	SS5_PROX	SS5_PROX:INTRON	DHX30	ENSG00000132153.15	ENST00000395745.6:ENST00000445061.6:ENST00000441384.5:ENST00000348968.8:ENST00000446256.6:ENST00000619982.4:ENST00000457607.1:ENST00000470959.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	177	2	2.95007	2.965755	2.98144	1.23235e-4	3.60505e-5	0.00999015	0.00481059
chr19	28513126	28513226	7166226	0	-	0.42	(0.408,0.44]	chr19	724189	449	INTRON	INTRON	ENSG00000283403:ENSG00000267243	ENSG00000283403.1:ENSG00000267243.6	ENST00000592347.5:ENST00000593065.5	lncRNA	lncRNA	lncRNA	lncRNA	7	140	2	2.72384	2.965735	3.20763	4.77241e-4	5.89253e-5	0.0202392	0.00630001
chr1	37975292	37975391	426379	0	-	0.474747	(0.44,0.476]	chr1	51690	52	INTRON	INTRON	SF3A3	ENSG00000183431.12	ENST00000373019.5:ENST00000460925.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	103	2	2.8424	2.965585	3.08877	6.35745e-4	5.52878e-4	0.0231636	0.021371
chr9	130096466	130096565	4211390	0	+	0.515152	(0.476,0.515]	chr9	386041	37	INTRON	INTRON	GPR107	ENSG00000148358.20	ENST00000372406.5:ENST00000372410.7:ENST00000347136.11:ENST00000493417.5:ENST00000610997.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	84	2	2.66112	2.96558	3.27004	0.0044598	2.20887e-4	0.0592169	0.0130309
chr7	111360576	111360676	3622088	0	-	0.42	(0.408,0.44]	chr7	337093	3967	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	63	2	2.60048	2.9655750000000003	3.33067	0.00484324	0.0024459	0.0640618	0.0445752
chr16	21421305	21421405	6460522	0	-	0.41	(0.408,0.44]	chr16	623199	1	SS5_PROX	SS5_PROX:INTRON	NPIPB3	ENSG00000169246.16	ENST00000504841.6:ENST00000419180.6:ENST00000519305.6:ENST00000521589.5:ENST00000534903.1:ENST00000538439.1:ENST00000545358.5:ENST00000535190.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	65	2	2.84077	2.96557	3.09037	0.0132196	5.47766e-4	0.0940535	0.0212924
chr1	149885690	149885785	549587	0	-	0.589474	(0.57,1]	chr1	64526	14	UTR3	UTR3:EXON_MRNA	H2BC21	ENSG00000184678.11	ENST00000369155.4	protein_coding	protein_coding	protein_coding	protein_coding	13	112	2	2.45124	2.96548	3.47972	3.59163e-5	4.55922e-6	0.00480968	0.00157263
chr13	28272399	28272485	5462183	0	+	0.372093	(0.35,0.378]	chr13	523312	2	SS5_PROX	SS5_PROX:INTRON	PAN3	ENSG00000152520.14	ENST00000380958.8:ENST00000399613.1	protein_coding	protein_coding	protein_coding	protein_coding	3	68	2	2.80179	2.96542	3.12905	0.00566312	0.00223906	0.0653997	0.0435144
chr16	53068971	53069071	6350858	0	+	0.36	(0.35,0.378]	chr16	609666	135	INTRON	INTRON	CHD9	ENSG00000177200.18	ENST00000447540.6:ENST00000566029.5:ENST00000615216.4:ENST00000561869.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	68	2	2.80179	2.96542	3.12905	0.00566312	0.00223906	0.0653997	0.0435144
chr12	112058104	112058202	5414903	0	-	0.397959	(0.378,0.408]	chr12	517177	32	INTRON	INTRON	NAA25	ENSG00000111300.10	ENST00000261745.9:ENST00000552527.5:ENST00000549711.5:ENST00000551858.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	89	2	2.31917	2.965375	3.61158	0.00252588	8.34292e-4	0.0465056	0.0266389
chr1	88765961	88766061	156588	0	+	0.52	(0.515,0.57]	chr1	17057	52	INTRON	INTRON	PKN2	ENSG00000065243.20	ENST00000316005.11:ENST00000370521.8:ENST00000370513.9	protein_coding	protein_coding	protein_coding	protein_coding	4	72	2	2.804	2.965365	3.12673	0.00215855	3.95089e-4	0.0417866	0.0178567
chr11	59798190	59798289	4795580	0	+	0.474747	(0.44,0.476]	chr11	444014	4	INTRON	INTRON	STX3	ENSG00000166900.17	ENST00000641815.1:ENST00000337979.9:ENST00000533637.5:ENST00000633708.1:ENST00000529177.5:ENST00000530221.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	84	2	2.7096	2.96529	3.22098	0.00376205	2.82213e-4	0.0539118	0.0149966
chr12	66168017	66168116	5352850	0	-	0.464646	(0.44,0.476]	chr12	511479	65	INTRON	INTRON	TMBIM4	ENSG00000155957.19	ENST00000358230.8:ENST00000544599.5:ENST00000398033.8:ENST00000633367.1:ENST00000286424.12:ENST00000545407.5:ENST00000542724.5:ENST00000545504.1:ENST00000534930.1:ENST00000542072.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	87	2	1.83459	2.965135	4.09568	0.0198542	4.34828e-5	0.109608	0.00532088
chr17	63760813	63760913	6811849	0	-	0.33	(0.32,0.35]	chr17	673168	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	CCDC47	ENSG00000108588.15	ENST00000225726.10:ENST00000403162.7:ENST00000582252.1:ENST00000582331.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	54	2	2.79707	2.9649200000000002	3.13277	0.0170923	0.00458313	0.104099	0.0622676
chr17	62010143	62010237	6810319	0	-	0.478723	(0.476,0.515]	chr17	672914	2	SS5_PROX	SS5_PROX:INTRON	MED13	ENSG00000108510.10	ENST00000397786.7	protein_coding	protein_coding	protein_coding	protein_coding	6	115	2	2.81288	2.9646749999999997	3.11647	6.41912e-4	1.95709e-4	0.0231685	0.0122528
chr13	111281177	111281274	5545994	0	+	0.278351	[0,0.28]	chr13	529867	1	INTRON	INTRON	ARHGEF7	ENSG00000102606.19	ENST00000317133.9:ENST00000375739.6:ENST00000375741.6:ENST00000646102.2:ENST00000469877.5:ENST00000466143.5:ENST00000218789.9:ENST00000375736.8:ENST00000426073.6:ENST00000375723.5:ENST00000478679.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	122	2	2.81642	2.96462	3.11282	0.00431467	8.44203e-4	0.0578825	0.0263813
chr2	58192815	58192910	1126256	0	-	0.315789	(0.28,0.32]	chr2	120910	14	INTRON	INTRON	FANCL	ENSG00000115392.13	ENST00000696400.1:ENST00000403295.8:ENST00000696492.1:ENST00000427708.7:ENST00000696314.1:ENST00000696315.1:ENST00000696454.1:ENST00000696508.1:ENST00000696548.1:ENST00000696542.1:ENST00000696432.1:ENST00000696319.1:ENST00000403676.6:ENST00000696433.1:ENST00000696434.1:ENST00000696499.1:ENST00000696564.1:ENST00000402135.8:ENST00000696546.1:ENST00000233741.9:ENST00000696316.1:ENST00000696378.1:ENST00000696435.1:ENST00000696493.1:ENST00000696543.1:ENST00000696544.1:ENST00000696545.1:ENST00000696565.1:ENST00000696620.1:ENST00000696621.1:ENST00000696635.1:ENST00000696364.1:ENST00000696634.1:ENST00000696317.1:ENST00000696622.1:ENST00000696467.1:ENST00000696547.1:ENST00000449070.6:ENST00000696305.1:ENST00000417361.2:ENST00000696338.1:ENST00000696361.1:ENST00000696318.1:ENST00000696371.1:ENST00000696409.1:ENST00000696410.1:ENST00000696455.1:ENST00000696468.1:ENST00000696527.1:ENST00000696567.1:ENST00000696324.1:ENST00000696566.1:ENST00000696623.1:ENST00000446381.6:ENST00000696469.1:ENST00000696624.1:ENST00000696411.1:ENST00000696475.1:ENST00000470506.2:ENST00000696358.1:ENST00000696373.1:ENST00000696394.1:ENST00000696320.1:ENST00000696339.1:ENST00000696395.1:ENST00000696341.1:ENST00000696340.1:ENST00000696374.1:ENST00000696396.1:ENST00000696342.1:ENST00000696325.1:ENST00000696399.1:ENST00000696398.1:ENST00000696306.1:ENST00000696397.1:ENST00000696360.1:ENST00000696344.1:ENST00000696343.1:ENST00000696637.1:ENST00000696362.1:ENST00000696528.1:ENST00000696497.1:ENST00000696326.1:ENST00000696638.1:ENST00000696625.1:ENST00000696510.1:ENST00000696438.1:ENST00000696496.1:ENST00000696509.1:ENST00000696569.1:ENST00000696457.1:ENST00000696458.1:ENST00000696473.1:ENST00000696495.1:ENST00000696415.1:ENST00000696472.1:ENST00000696494.1:ENST00000696363.1:ENST00000696414.1:ENST00000696459.1:ENST00000696498.1:ENST00000696416.1:ENST00000696530.1:ENST00000696460.1:ENST00000696570.1:ENST00000696531.1:ENST00000696307.1:ENST00000696401.1:ENST00000696345.1:ENST00000696377.1:ENST00000696417.1:ENST00000696594.1:ENST00000696595.1:ENST00000696379.1:ENST00000696346.1:ENST00000696380.1:ENST00000696347.1:ENST00000696461.1:ENST00000696596.1:ENST00000696549.1:ENST00000696597.1:ENST00000696550.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	96	2	2.21798	2.964525	3.71107	0.00901091	8.39788e-4	0.0851009	0.0266487
chr11	28131451	28131551	4752389	0	+	0.29	(0.28,0.32]	chr11	440090	57	INTRON	INTRON	METTL15	ENSG00000169519.21	ENST00000406787.7:ENST00000451385.6:ENST00000407364.8:ENST00000532947.2:ENST00000634627.1:ENST00000634973.1:ENST00000303459.10:ENST00000634721.1:ENST00000634762.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	80	2	2.18092	2.96449	3.74806	0.0271832	4.11943e-4	0.123904	0.0181365
chr11	33860762	33860860	4941721	0	-	0.418367	(0.408,0.44]	chr11	463033	8	INTRON	INTRON	LMO2	ENSG00000135363.12	ENST00000257818.3:ENST00000395833.7:ENST00000411482.1:ENST00000464025.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	89	2	2.20979	2.964265	3.71874	0.00496289	3.17998e-4	0.0615009	0.0159645
chr17	62009367	62009464	6810311	0	-	0.329897	(0.32,0.35]	chr17	672913	20	INTRON	INTRON	MED13	ENSG00000108510.10	ENST00000397786.7	protein_coding	protein_coding	protein_coding	protein_coding	4	99	2	2.5652	2.964185	3.36317	0.00765724	1.69213e-4	0.075364	0.0112853
chr1	244658719	244658819	347767	0	+	0.41	(0.408,0.44]	chr1	40357	23	INTRON	INTRON	DESI2	ENSG00000121644.19	ENST00000263831.11:ENST00000302550.16:ENST00000418162.1	protein_coding	protein_coding	protein_coding	protein_coding	2	47	2	2.84077	2.9640750000000002	3.08738	0.0132196	0.00478231	0.0940535	0.0636201
chr10	74111408	74111508	4455659	0	+	0.41	(0.408,0.44]	chr10	411498	1	SS3_PROX	SS3_PROX:INTRON	VCL	ENSG00000035403.18	ENST00000623461.3:ENST00000372755.7:ENST00000624354.3:ENST00000211998.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	48	2	2.51492	2.9640750000000002	3.41323	0.0329839	0.00129989	0.133816	0.0333764
chr16	67797740	67797839	6505595	0	-	0.414141	(0.408,0.44]	chr16	629654	253	INTRON	INTRON	RANBP10	ENSG00000141084.12	ENST00000317506.8:ENST00000448631.6:ENST00000602506.5:ENST00000602677.5:ENST00000602525.5:ENST00000602638.5:ENST00000602815.5:ENST00000602887.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	48	2	2.51492	2.9640750000000002	3.41323	0.0329839	0.00129989	0.133816	0.0333764
chr3	172050342	172050442	1559651	0	+	0.41	(0.408,0.44]	chr3	161527	30	INTRON	INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000421757.5:ENST00000469491.5:ENST00000336824.8:ENST00000423424.5:ENST00000416957.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	48	2	2.51492	2.9640750000000002	3.41323	0.0329839	0.00129989	0.133816	0.0333764
chr7	135455210	135455310	3648412	0	-	0.43	(0.408,0.44]	chr7	339187	164	INTRON	INTRON	CNOT4	ENSG00000080802.20	ENST00000541284.6:ENST00000451834.5:ENST00000423368.6:ENST00000361528.8:ENST00000428680.6:ENST00000315544.6:ENST00000491203.5:ENST00000498534.5:ENST00000465721.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	47	2	2.84077	2.9640750000000002	3.08738	0.0132196	0.00478231	0.0940535	0.0636201
chr1	212796686	212796783	309619	0	+	0.340206	(0.32,0.35]	chr1	35732	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TATDN3	ENSG00000203705.11	ENST00000532324.5:ENST00000530441.5:ENST00000526641.5:ENST00000366973.8:ENST00000531963.5:ENST00000366974.9:ENST00000526997.5:ENST00000533650.5:ENST00000532433.5:ENST00000488246.6:ENST00000525574.5:ENST00000497768.7:ENST00000530399.2:ENST00000525569.5:ENST00000530392.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	54	2	2.74415	2.964035	3.18392	0.0198267	0.00379806	0.109608	0.0562562
chr2	71411261	71411360	807841	0	+	0.343434	(0.32,0.35]	chr2	90285	21	INTRON	INTRON	ZNF638	ENSG00000075292.19	ENST00000409544.5:ENST00000264447.9:ENST00000487638.5:ENST00000494241.5:ENST00000409407.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	54	2	2.74415	2.964035	3.18392	0.0198267	0.00379806	0.109608	0.0562562
chr22	19489562	19489661	7476932	0	+	0.323232	(0.32,0.35]	chr22	762407	52	INTRON	INTRON	CDC45	ENSG00000093009.11	ENST00000407835.6:ENST00000437685.6:ENST00000483431.5:ENST00000438587.6:ENST00000672837.1:ENST00000263201.7:ENST00000404724.7:ENST00000487669.5:ENST00000428937.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	54	2	2.74415	2.964035	3.18392	0.0198267	0.00379806	0.109608	0.0562562
chr3	14164454	14164543	1619025	0	-	0.325843	(0.32,0.35]	chr3	167325	2	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	XPC	ENSG00000154767.15	ENST00000285021.12:ENST00000476581.6:ENST00000477324.6:ENST00000455144.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	54	2	2.74415	2.964035	3.18392	0.0198267	0.00379806	0.109608	0.0562562
chr5	55330892	55330991	2355320	0	+	0.333333	(0.32,0.35]	chr5	227152	16	INTRON	INTRON	MTREX	ENSG00000039123.16	ENST00000230640.10:ENST00000506750.5:ENST00000504997.1:ENST00000505565.5:ENST00000502953.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	54	2	2.74415	2.964035	3.18392	0.0198267	0.00379806	0.109608	0.0562562
chr1	224125079	224125178	321218	0	+	0.343434	(0.32,0.35]	chr1	36996	103	INTRON	INTRON	FBXO28	ENSG00000143756.12	ENST00000366862.10:ENST00000424254.6:ENST00000523990.1:ENST00000483773.1:ENST00000519894.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	54	2	2.84812	2.963935	3.07975	0.0147575	0.00554235	0.0983813	0.0674105
chr20	47352075	47352174	7349471	0	-	0.575758	(0.57,1]	chr20	749366	3	INTRON	INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000435836.5	protein_coding	protein_coding	protein_coding	protein_coding	9	87	2	2.4186	2.96393	3.50926	3.13268e-4	3.38848e-6	0.016281	0.00120054
chr22	21849928	21850028	7561209	0	-	0.35	(0.32,0.35]	chr22	773388	417	INTRON	INTRON	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	3	75	2	2.69421	2.9637599999999997	3.23331	0.00484681	0.00315414	0.0605691	0.0515261
chr3	43528720	43528820	1674501	0	-	0.37	(0.35,0.378]	chr3	170972	956	INTRON	INTRON	ANO10	ENSG00000160746.13	ENST00000292246.8:ENST00000350459.8:ENST00000396091.7:ENST00000414522.6:ENST00000451430.6:ENST00000448045.1	protein_coding	protein_coding	protein_coding	protein_coding	4	92	2	2.94132	2.963695	2.98607	0.0016832	9.86191e-4	0.0370386	0.0288537
chr5	151807829	151807928	2522191	0	+	0.272727	[0,0.28]	chr5	241380	24	UTR3	UTR3:EXON_MRNA:INTRON	G3BP1	ENSG00000145907.16	ENST00000678964.1:ENST00000678925.1:ENST00000394123.7:ENST00000676978.1:ENST00000679289.1:ENST00000677493.1:ENST00000676644.1:ENST00000677757.1:ENST00000356245.8:ENST00000678646.1:ENST00000677381.1:ENST00000678904.1:ENST00000677923.1:ENST00000677323.1:ENST00000676715.1:ENST00000676734.1:ENST00000676878.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	91	2	2.17149	2.9636750000000003	3.75586	0.0308079	5.203e-4	0.13151	0.0204523
chr5	134774845	134774942	2490540	0	+	0.484536	(0.476,0.515]	chr5	237899	6	INTRON	INTRON	DDX46	ENSG00000145833.16	ENST00000628477.2:ENST00000452510.7:ENST00000507392.5:ENST00000354283.8:ENST00000509255.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	75	2	2.59304	2.9635999999999996	3.33416	0.00230489	0.00158794	0.0428247	0.0367961
chr2	55233666	55233749	781604	0	+	0.60241	(0.57,1]	chr2	87985	4	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPS27A	ENSG00000143947.15	ENST00000402285.7:ENST00000449323.5:ENST00000404735.1:ENST00000272317.11:ENST00000471772.6:ENST00000478196.6:ENST00000494756.1:ENST00000495843.1:ENST00000468810.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	48	2	2.44356	2.9634650000000002	3.48337	0.00109465	6.20854e-4	0.0304174	0.0223951
chr21	38039112	38039212	7463272	0	-	0.36	(0.35,0.378]	chr21	760277	286	INTRON	INTRON	DSCR4	ENSG00000184029.9	ENST00000398948.5	lncRNA	lncRNA	lncRNA	lncRNA	2	52	2	2.47065	2.96343	3.45621	0.0386172	0.0011842	0.142656	0.031662
chr3	197828675	197828772	1598098	0	+	0.371134	(0.35,0.378]	chr3	165589	13	INTRON	INTRON	LRCH3	ENSG00000186001.14	ENST00000443727.1:ENST00000438796.6:ENST00000428136.2:ENST00000425562.7:ENST00000441090.6:ENST00000414675.6:ENST00000334859.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	52	2	2.47065	2.96343	3.45621	0.0386172	0.0011842	0.142656	0.031662
chr7	30605277	30605362	3301541	0	+	0.376471	(0.35,0.378]	chr7	306543	4	UTR3	UTR3:EXON_MRNA:INTRON	GARS1	ENSG00000106105.15	ENST00000675051.1:ENST00000470392.2:ENST00000674643.1:ENST00000675529.1:ENST00000674807.1:ENST00000675810.1:ENST00000676088.1:ENST00000674815.1:ENST00000676403.1:ENST00000485784.2:ENST00000676210.1:ENST00000478124.6:ENST00000454308.6:ENST00000389266.8:ENST00000675693.1:ENST00000676259.1:ENST00000675651.1:ENST00000674616.1:ENST00000674737.1:ENST00000675859.1:ENST00000676140.1:ENST00000674969.1:ENST00000676164.1:ENST00000675886.1:ENST00000444666.6:ENST00000675587.1:ENST00000674851.1:ENST00000675863.1:ENST00000674734.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	52	2	2.47065	2.96343	3.45621	0.0386172	0.0011842	0.142656	0.031662
chr11	63625961	63626060	4962359	0	-	0.333333	(0.32,0.35]	chr11	467121	20	UTR3	UTR3:EXON_MRNA	ATL3	ENSG00000184743.13	ENST00000398868.8	protein_coding	protein_coding	protein_coding	protein_coding	5	121	2	2.83794	2.9632899999999998	3.08864	9.00082e-4	6.64579e-4	0.0277303	0.0233423
chr4	174317972	174318070	2082936	0	+	0.367347	(0.35,0.378]	chr4	205864	7	UTR3	UTR3:EXON_MRNA:INTRON	CEP44	ENSG00000164118.13	ENST00000457424.6:ENST00000396791.7:ENST00000503780.6:ENST00000426172.3:ENST00000296519.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	15	310	2	2.48229	2.9632300000000003	3.44417	2.33932e-4	7.07815e-7	0.0140064	4.67178e-4
chr6	34308078	34308178	3083927	0	-	0.28	[0,0.28]	chr6	288627	120	INTRON	INTRON	NUDT3:RPS10-NUDT3	ENSG00000272325.2:ENSG00000270800.3	ENST00000607016.2:ENST00000639725.1:ENST00000639877.1:ENST00000605528.2	protein_coding	protein_coding	protein_coding	protein_coding	5	147	2	2.80461	2.9628249999999996	3.12104	0.00141462	9.57163e-4	0.0340865	0.0284484
chr16	29552042	29552132	6471113	0	-	0.355556	(0.35,0.378]	chr16	625247	3	INTRON	INTRON	ENSG00000288632:SMG1P2	ENSG00000288632.1:ENSG00000205534.6	ENST00000675579.1:ENST00000566127.1	lncRNA	lncRNA	lncRNA:transcribed_unprocessed_pseudogene	lncRNA:transcribed_unprocessed_pseudogene	2	52	2	2.79643	2.96274	3.12905	0.013543	0.00566312	0.101363	0.0653997
chr1	31928642	31928742	414338	0	-	0.38	(0.378,0.408]	chr1	49920	41	INTRON	INTRON	PTP4A2	ENSG00000184007.22	ENST00000647444.2:ENST00000649841.1:ENST00000468531.1:ENST00000534796.5:ENST00000532289.1:ENST00000526960.1:ENST00000524384.5:ENST00000528840.1:ENST00000494444.2:ENST00000529477.5:ENST00000533408.1:ENST00000475464.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	144	2	2.87154	2.9627	3.05386	6.11179e-4	4.83737e-5	0.0227393	0.00567485
chr7	44578784	44578883	3528422	0	-	0.454545	(0.44,0.476]	chr7	329077	10	UTR3	UTR3:EXON_MRNA	TMED4	ENSG00000158604.15	ENST00000289577.9:ENST00000457408.7	protein_coding	protein_coding	protein_coding	protein_coding	14	269	2	2.73859	2.962655	3.18672	7.64409e-5	1.77923e-6	0.00780552	8.02304e-4
chrX	71412035	71412135	7678704	0	+	0.41	(0.408,0.44]	chrX	786269	35	INTRON	INTRON	TAF1	ENSG00000147133.17	ENST00000683202.1:ENST00000373790.9:ENST00000423759.6:ENST00000683782.1:ENST00000683668.1:ENST00000276072.9:ENST00000463163.5:ENST00000373775.8:ENST00000485087.6:ENST00000437147.8:ENST00000683358.1:ENST00000682124.1:ENST00000461764.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	64	2	2.16746	2.962505	3.75755	0.024436	2.62433e-4	0.12011	0.0143317
chr5	171390717	171390814	2546594	0	+	0.484536	(0.476,0.515]	chr5	243084	7	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	NPM1	ENSG00000181163.14	ENST00000517671.5:ENST00000676613.1:ENST00000678186.1:ENST00000678267.1:ENST00000677297.1:ENST00000521672.6:ENST00000679190.1:ENST00000677467.1:ENST00000678280.1:ENST00000676625.1:ENST00000679006.1:ENST00000351986.10:ENST00000676504.1:ENST00000676589.1:ENST00000677357.1:ENST00000679233.1:ENST00000296930.10:ENST00000393820.2:ENST00000521260.2:ENST00000518587.2:ENST00000678774.1:ENST00000521710.2:ENST00000677600.1:ENST00000677741.1:ENST00000523622.1:ENST00000677325.1:ENST00000677672.1:ENST00000677907.1:ENST00000677904.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	24	486	2	2.7377	2.96249	3.18728	1.26896e-5	4.55921e-7	0.00265616	3.89264e-4
chr5	458525	458608	2313224	0	+	0.445783	(0.44,0.476]	chr5	223779	1	INTRON	INTRON	EXOC3	ENSG00000180104.16	ENST00000512944.6:ENST00000515601.6:ENST00000315013.9:ENST00000503889.2:ENST00000510028.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	76	2	2.28847	2.9624249999999996	3.63638	0.00692113	4.74104e-4	0.0718189	0.0196816
chr12	50157891	50157990	5323081	0	-	0.515152	(0.476,0.515]	chr12	507529	32	INTRON	INTRON	CERS5	ENSG00000139624.14	ENST00000317551.12:ENST00000422340.6:ENST00000551697.5:ENST00000380189.8:ENST00000547787.5:ENST00000438450.6:ENST00000542320.5:ENST00000547800.2:ENST00000549389.5:ENST00000550258.5:ENST00000547455.5:ENST00000546514.1:ENST00000549942.1:ENST00000550899.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	62	2	2.72507	2.96241	3.19975	0.00383299	0.0029369	0.0542786	0.0496505
chr11	86064655	86064755	5014799	0	-	0.22	[0,0.28]	chr11	473022	327	INTRON	INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000630913.2:ENST00000528398.5:ENST00000356360.9:ENST00000534412.5:ENST00000531558.1:ENST00000531930.5:ENST00000532041.5:ENST00000525162.5:ENST00000528256.1:ENST00000528411.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	230	2	2.83083	2.962255	3.09368	0.00150593	4.43249e-5	0.0352794	0.00540124
chr4	110150987	110151087	2227258	0	-	0.36	(0.35,0.378]	chr4	218024	450	INTRON	INTRON	ELOVL6	ENSG00000170522.10	ENST00000394607.7:ENST00000302274.8:ENST00000514184.5:ENST00000506625.5:ENST00000506461.1:ENST00000503885.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	82	2	2.28182	2.9621700000000004	3.64252	0.00637232	8.02255e-4	0.0724821	0.0262199
chr19	801471	801570	6992135	0	+	0.606061	(0.57,1]	chr19	692237	15	INTRON	INTRON	PTBP1	ENSG00000011304.22	ENST00000635647.1:ENST00000627714.2:ENST00000676227.1:ENST00000677277.1:ENST00000592804.2:ENST00000349038.8:ENST00000590887.5:ENST00000586481.5:ENST00000586944.5:ENST00000356948.11:ENST00000394601.8:ENST00000589575.5:ENST00000587191.3:ENST00000679114.1:ENST00000350092.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	26	2	2.89463	2.96215	3.02967	0.00788262	0.00471306	0.076155	0.0631419
chr22	21512731	21512831	7560218	0	-	0.63	(0.57,1]	chr22	773318	203	INTRON	INTRON	PI4KAP2	ENSG00000183506.17	ENST00000450651.5:ENST00000467443.5:ENST00000479693.1:ENST00000476537.1:ENST00000491562.5	transcribed_unitary_pseudogene	retained_intron	transcribed_unitary_pseudogene	retained_intron:processed_transcript	2	26	2	2.89463	2.96215	3.02967	0.00788262	0.00471306	0.076155	0.0631419
chr7	106275751	106275849	3608518	0	-	0.602041	(0.57,1]	chr7	336538	8	EXON_MRNA	EXON_MRNA:INTRON	NAMPT	ENSG00000105835.13	ENST00000681491.1:ENST00000222553.8:ENST00000681494.1:ENST00000680708.1:ENST00000681653.1:ENST00000681391.1:ENST00000680991.1:ENST00000680077.1:ENST00000681456.1:ENST00000680675.1:ENST00000681550.1:ENST00000680864.1:ENST00000680584.1:ENST00000680669.1:ENST00000424768.2:ENST00000681255.1:ENST00000679873.1:ENST00000679643.1:ENST00000681878.1:ENST00000489732.2:ENST00000679951.1:ENST00000680823.1:ENST00000680468.1:ENST00000681936.1:ENST00000680152.1:ENST00000681887.1:ENST00000680129.1:ENST00000680786.1:ENST00000681223.1:ENST00000679717.1:ENST00000484527.6:ENST00000354289.9:ENST00000491027.6:ENST00000393618.6:ENST00000489358.5:ENST00000441045.6:ENST00000417537.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	26	2	2.89463	2.96215	3.02967	0.00788262	0.00471306	0.076155	0.0631419
chr1	30954580	30954680	411764	0	-	0.33	(0.32,0.35]	chr1	49653	2	INTRON	INTRON	PUM1	ENSG00000134644.16	ENST00000426105.7:ENST00000373747.7:ENST00000257075.9:ENST00000424085.6:ENST00000525843.5:ENST00000440538.6:ENST00000498419.5:ENST00000373741.8:ENST00000373742.6:ENST00000527498.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	74	2	2.89743	2.962145	3.02686	0.0127608	8.86699e-4	0.0926667	0.0271952
chr1	43908382	43908481	88123	0	+	0.464646	(0.44,0.476]	chr1	11765	72	INTRON	INTRON	ST3GAL3	ENSG00000126091.21	ENST00000643597.1:ENST00000372372.7:ENST00000545417.5:ENST00000330208.6:ENST00000335430.10:ENST00000361400.9:ENST00000347631.8:ENST00000642331.1:ENST00000647237.1:ENST00000643252.1:ENST00000372374.7:ENST00000361392.9:ENST00000533997.6:ENST00000353126.8:ENST00000645640.1:ENST00000642934.1:ENST00000643283.1:ENST00000351035.8:ENST00000642949.1:ENST00000489897.6:ENST00000646971.1:ENST00000645142.1:ENST00000645705.1:ENST00000530154.5:ENST00000646027.1:ENST00000646069.1:ENST00000642504.1:ENST00000647148.1:ENST00000262915.8:ENST00000647482.1:ENST00000645394.1:ENST00000647128.1:ENST00000361746.9:ENST00000645034.1:ENST00000645165.1:ENST00000647134.1:ENST00000644195.1:ENST00000642194.1:ENST00000372368.7:ENST00000646686.1:ENST00000372366.6:ENST00000361812.9:ENST00000469715.6:ENST00000372369.5:ENST00000372367.5:ENST00000372365.5:ENST00000528371.5:ENST00000533212.5:ENST00000530581.5:ENST00000531816.1:ENST00000531993.6:ENST00000490541.6:ENST00000372362.6:ENST00000531451.5:ENST00000645117.1:ENST00000533933.6:ENST00000332628.11:ENST00000643813.1:ENST00000644922.1:ENST00000644287.1:ENST00000647503.1:ENST00000461375.2:ENST00000642780.1:ENST00000644645.1:ENST00000645644.1:ENST00000644016.1:ENST00000647299.1:ENST00000644378.1:ENST00000645161.1:ENST00000646032.1:ENST00000643989.1:ENST00000645012.1:ENST00000490502.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	75	2	2.572	2.962135	3.35227	0.0022005699999999998	0.00173736	0.0417893	0.03851
chr4	55406827	55406927	1960699	0	+	0.51	(0.476,0.515]	chr4	196553	31	INTRON	INTRON	TMEM165	ENSG00000134851.13	ENST00000381334.10:ENST00000506198.5:ENST00000508404.5:ENST00000511710.1:ENST00000502797.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	100	2	2.92386	2.962105	3.00035	0.00109036	3.01132e-4	0.0303873	0.0155054
chr1	215571612	215571711	314218	0	+	0.474747	(0.44,0.476]	chr1	36190	35	INTRON	INTRON	KCTD3	ENSG00000136636.13	ENST00000259154.9	protein_coding	protein_coding	protein_coding	protein_coding	5	101	2	2.41757	2.9620800000000003	3.50659	0.00417342	5.83536e-5	0.057064	0.00625795
chr2	158623296	158623394	898822	0	+	0.479592	(0.476,0.515]	chr2	99398	15	INTRON	INTRON	PKP4	ENSG00000144283.23	ENST00000389759.8:ENST00000426248.7:ENST00000389757.7:ENST00000452162.5:ENST00000421462.5:ENST00000481115.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	100	2	2.75286	2.96203	3.1712	7.3224e-4	4.95874e-4	0.0246502	0.0206925
chr5	119108751	119108851	2460145	0	+	0.35	(0.32,0.35]	chr5	235607	31	INTRON	INTRON	DMXL1	ENSG00000172869.15	ENST00000539542.6:ENST00000503802.5:ENST00000311085.8:ENST00000514151.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	126	2	2.4961	2.96195	3.4278	0.00967886	2.1905e-5	0.0828038	0.00364881
chr21	46226073	46226171	7470853	0	-	0.408163	(0.378,0.408]	chr21	761544	30	INTRON	INTRON	LSS	ENSG00000160285.15	ENST00000356396.8:ENST00000397728.8:ENST00000457828.6:ENST00000522411.5:ENST00000464357.1:ENST00000450351.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	24	477	2	2.94345	2.9619299999999997	2.98041	5.86678e-6	1.24662e-6	0.00181169	6.49169e-4
chr19	18366742	18366841	7032717	0	+	0.424242	(0.408,0.44]	chr19	700773	33	UTR3	UTR3:EXON_MRNA:INTRON	PGPEP1	ENSG00000130517.14	ENST00000269919.11:ENST00000597663.2:ENST00000595552.2	protein_coding	protein_coding	protein_coding	protein_coding	9	152	2	2.11133	2.9619150000000003	3.8125	0.00160206	1.82667e-5	0.0367961	0.00348613
chr6	31667095	31667192	2843390	0	+	0.463918	(0.44,0.476]	chr6	267723	3	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	CSNK2B	ENSG00000204435.15	ENST00000677388.1:ENST00000677536.1:ENST00000677758.1:ENST00000375885.8:ENST00000375882.7:ENST00000468255.5:ENST00000465481.6:ENST00000481269.1:ENST00000475875.2:ENST00000375865.6:ENST00000375866.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	136	2	2.70252	2.96175	3.22098	2.82213e-4	2.59902e-4	0.0149966	0.0148796
chr10	92481116	92481216	4664457	0	-	0.43	(0.408,0.44]	chr10	429798	2	SS3_PROX	SS3_PROX:INTRON	IDE	ENSG00000119912.18	ENST00000265986.11:ENST00000679312.1:ENST00000650060.1:ENST00000371581.9:ENST00000679089.1:ENST00000677569.1:ENST00000677096.1:ENST00000679222.1:ENST00000676540.1:ENST00000678026.1:ENST00000676626.1:ENST00000679069.1:ENST00000678977.1:ENST00000679232.1:ENST00000678844.1:ENST00000679174.1:ENST00000678673.1:ENST00000676816.1:ENST00000678715.1:ENST00000678458.1:ENST00000677193.1:ENST00000679304.1:ENST00000676987.1:ENST00000677079.1:ENST00000677434.1:ENST00000678824.1:ENST00000496903.5:ENST00000678248.1:ENST00000678410.1:ENST00000478361.6:ENST00000492362.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	47	2	2.71911	2.96174	3.20437	0.0189489	0.00306596	0.108861	0.0509893
chr1	1317819	1317899	359493	0	-	0.3875	(0.378,0.408]	chr1	41632	4	EXON_LNCRNA	EXON_LNCRNA:INTRON	INTS11:ENSG00000240731	ENSG00000127054.22:ENSG00000240731.1	ENST00000540437.5:ENST00000545578.5:ENST00000620829.4:ENST00000435064.6:ENST00000323275.10:ENST00000411962.5:ENST00000419704.5:ENST00000458452.7:ENST00000421495.6:ENST00000532772.5:ENST00000450926.6:ENST00000527098.5:ENST00000528879.5:ENST00000531377.5:ENST00000434694.6:ENST00000488042.6:ENST00000526797.5:ENST00000526332.5:ENST00000430786.5:ENST00000527719.5:ENST00000530031.5:ENST00000526113.1:ENST00000526904.5:ENST00000525603.1:ENST00000444968.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA	2	29	2	1.81685	2.96173	4.10661	0.0597868	0.0399023	0.189982	0.143072
chr10	22676748	22676847	4580124	0	-	0.40404	(0.378,0.408]	chr10	422040	145	INTRON	INTRON	PIP4K2A	ENSG00000150867.14	ENST00000376573.9:ENST00000545335.5:ENST00000605011.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	29	2	1.81685	2.96173	4.10661	0.0597868	0.0399023	0.189982	0.143072
chr11	14331902	14332002	4917399	0	-	0.38	(0.378,0.408]	chr11	460800	232	INTRON	INTRON	RRAS2	ENSG00000133818.14	ENST00000256196.9:ENST00000537760.5:ENST00000529237.5:ENST00000534746.5:ENST00000526063.5:ENST00000532814.5:ENST00000531807.5:ENST00000532950.5:ENST00000531421.5:ENST00000526717.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	29	2	1.81685	2.96173	4.10661	0.0597868	0.0399023	0.189982	0.143072
chr2	120125693	120125793	859430	0	+	0.38	(0.378,0.408]	chr2	96432	174	INTRON	INTRON	EPB41L5	ENSG00000115109.14	ENST00000263713.10:ENST00000443902.6:ENST00000452780.1:ENST00000461128.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	29	2	1.81685	2.96173	4.10661	0.0597868	0.0399023	0.189982	0.143072
chr20	49704679	49704779	7353536	0	-	0.39	(0.378,0.408]	chr20	749846	476	INTRON	INTRON	B4GALT5	ENSG00000158470.5	ENST00000371711.4	protein_coding	protein_coding	protein_coding	protein_coding	2	29	2	1.81685	2.96173	4.10661	0.0597868	0.0399023	0.189982	0.143072
chr5	62502774	62502873	2363924	0	+	0.393939	(0.378,0.408]	chr5	227945	83	INTRON	INTRON	IPO11	ENSG00000086200.17	ENST00000424533.5:ENST00000325324.11:ENST00000409296.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	29	2	1.81685	2.96173	4.10661	0.0597868	0.0399023	0.189982	0.143072
chr7	50751723	50751822	3532260	0	-	0.40404	(0.378,0.408]	chr7	329512	42	INTRON	INTRON	GRB10	ENSG00000106070.20	ENST00000335866.7:ENST00000401949.6:ENST00000644769.1:ENST00000644879.1:ENST00000406641.5:ENST00000402497.6:ENST00000643299.1:ENST00000407526.6:ENST00000645075.2:ENST00000439044.7:ENST00000644716.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	29	2	1.81685	2.96173	4.10661	0.0597868	0.0399023	0.189982	0.143072
chr7	6400288	6400388	3273285	0	+	0.39	(0.378,0.408]	chr7	304336	1	SS5_PROX	SS5_PROX:INTRON	RAC1	ENSG00000136238.19	ENST00000348035.9:ENST00000356142.4:ENST00000488373.5:ENST00000497741.5:ENST00000473564.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	78	2	2.31181	2.9616949999999997	3.61158	0.00548372	8.34292e-4	0.0671431	0.0266389
chr1	100292282	100292379	172538	0	+	0.340206	(0.32,0.35]	chr1	18779	9	UTR3	UTR3:EXON_MRNA	RTCA	ENSG00000137996.13	ENST00000370128.9	protein_coding	protein_coding	protein_coding	protein_coding	3	74	2	2.4053	2.96169	3.51808	0.0108284	0.00151238	0.0920575	0.0352794
chr5	151796220	151796313	2522058	0	+	0.408602	(0.408,0.44]	chr5	241338	8	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	G3BP1	ENSG00000145907.16	ENST00000678070.1:ENST00000678964.1:ENST00000678925.1:ENST00000394123.7:ENST00000676978.1:ENST00000679289.1:ENST00000677493.1:ENST00000676644.1:ENST00000677757.1:ENST00000522761.6:ENST00000676827.1:ENST00000520177.6:ENST00000676634.1:ENST00000678854.1:ENST00000676911.1:ENST00000356245.8:ENST00000678646.1:ENST00000677381.1:ENST00000678904.1:ENST00000678910.1:ENST00000678101.1:ENST00000677105.1:ENST00000676813.1:ENST00000522367.6:ENST00000678369.1:ENST00000677433.1:ENST00000678564.1:ENST00000677923.1:ENST00000677323.1:ENST00000522666.1:ENST00000678750.1:ENST00000677687.1:ENST00000678372.1:ENST00000677211.1:ENST00000678194.1:ENST00000679004.1:ENST00000678726.1:ENST00000678500.1:ENST00000679135.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	63	2	2.86612	2.961585	3.05705	0.00658331	0.00157924	0.0701901	0.0366789
chr10	102314130	102314230	4513336	0	+	0.41	(0.408,0.44]	chr10	415721	4	SS3_PROX	SS3_PROX:INTRON	GBF1	ENSG00000107862.7	ENST00000676513.1:ENST00000676939.1:ENST00000677439.1:ENST00000677240.1:ENST00000677618.1:ENST00000679155.1:ENST00000679280.1:ENST00000678036.1:ENST00000678476.1:ENST00000678504.1:ENST00000677247.1:ENST00000677655.1:ENST00000678351.1:ENST00000679238.1:ENST00000677487.1:ENST00000677506.1:ENST00000678666.1:ENST00000676560.1:ENST00000673650.1:ENST00000674034.1:ENST00000369983.5:ENST00000679003.1:ENST00000678486.1:ENST00000676682.1:ENST00000676807.1:ENST00000676993.1:ENST00000678575.1:ENST00000677522.1:ENST00000678293.1:ENST00000679087.1:ENST00000677683.1:ENST00000676861.1:ENST00000677491.1:ENST00000677461.1:ENST00000677871.1:ENST00000677431.1:ENST00000677852.1:ENST00000678401.1:ENST00000677956.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	47	2	2.89795	2.96154	3.02513	0.0110735	0.0059965	0.0873897	0.0700606
chr17	16455215	16455315	6562812	0	+	0.42	(0.408,0.44]	chr17	637925	133	INTRON	INTRON	SNHG29	ENSG00000175061.19	ENST00000584177.5:ENST00000665646.1:ENST00000660419.1:ENST00000668333.1:ENST00000664939.1:ENST00000583400.7:ENST00000669136.1:ENST00000580770.5:ENST00000581718.6:ENST00000579473.6:ENST00000581361.5:ENST00000692724.1:ENST00000689691.1:ENST00000686699.1:ENST00000472367.5:ENST00000483588.2:ENST00000478103.6:ENST00000658943.1	lncRNA	lncRNA	lncRNA	lncRNA	2	47	2	2.89795	2.96154	3.02513	0.0110735	0.0059965	0.0873897	0.0700606
chr8	89733238	89733338	3985037	0	-	0.39	(0.378,0.408]	chr8	364998	72	INTRON	INTRON	RIPK2-DT	ENSG00000251136.10	ENST00000688654.1:ENST00000690564.1:ENST00000661105.1:ENST00000685145.1:ENST00000519655.6:ENST00000656898.2:ENST00000685787.1:ENST00000693018.1:ENST00000691313.1:ENST00000691446.1:ENST00000524190.2:ENST00000691897.1:ENST00000685988.1:ENST00000691595.1:ENST00000688855.1:ENST00000504145.6:ENST00000685619.1:ENST00000653574.1:ENST00000687824.1:ENST00000521996.2:ENST00000692782.1:ENST00000655144.2:ENST00000687204.1:ENST00000689241.1:ENST00000686009.1:ENST00000685448.1	lncRNA	lncRNA	lncRNA	lncRNA	4	87	2	2.80155	2.961525	3.1215	0.00278307	4.84777e-4	0.0469265	0.0199443
chr11	46801636	46801720	4948308	0	-	0.380952	(0.378,0.408]	chr11	463809	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CKAP5	ENSG00000175216.15	ENST00000529230.6:ENST00000312055.9:ENST00000354558.7:ENST00000532321.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	89	2	2.47752	2.9615150000000003	3.44551	0.0092831	8.68398e-5	0.0817766	0.00783027
chr2	222890642	222890735	1021510	0	+	0.516129	(0.515,0.57]	chr2	109266	4	INTRON	INTRON	ACSL3	ENSG00000123983.15	ENST00000392066.7:ENST00000407441.5:ENST00000680251.1:ENST00000679541.1:ENST00000681906.1:ENST00000679545.1:ENST00000679932.1:ENST00000680100.1:ENST00000680475.1:ENST00000680525.1:ENST00000680420.1:ENST00000681326.1:ENST00000681292.1:ENST00000681017.1:ENST00000680382.1:ENST00000535678.2:ENST00000680395.1:ENST00000680736.1:ENST00000679546.1:ENST00000680147.1:ENST00000357430.8:ENST00000681009.1:ENST00000679514.1:ENST00000681697.1:ENST00000680921.1:ENST00000681383.1:ENST00000413316.1:ENST00000679558.1:ENST00000680684.1:ENST00000680424.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	56	2	2.83501	2.96145	3.08789	0.0117686	4.83127e-4	0.0894475	0.0199261
chr19	11938071	11938171	7019883	0	+	0.5	(0.476,0.515]	chr19	697884	124	INTRON	INTRON	ZNF700	ENSG00000196757.8	ENST00000622593.4:ENST00000254321.10	protein_coding	protein_coding	protein_coding	protein_coding	4	77	2	2.47496	2.9614	3.44784	0.00323541	0.00113238	0.0507251	0.0308465
chr5	131561477	131561577	2718432	0	-	0.5	(0.476,0.515]	chr5	255603	1	SS5_PROX	SS5_PROX:INTRON	RAPGEF6	ENSG00000158987.22	ENST00000509018.6:ENST00000507093.5:ENST00000296859.10:ENST00000627212.2:ENST00000308008.10:ENST00000515170.5:ENST00000510071.5:ENST00000503398.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	63	2	2.21677	2.96115	3.70553	0.0207026	3.44823e-4	0.110999	0.0165103
chr21	33564060	33564160	7397646	0	+	0.38	(0.378,0.408]	chr21	753541	35	INTRON	INTRON	SON	ENSG00000159140.22	ENST00000356577.10:ENST00000381692.6:ENST00000695559.1:ENST00000455528.5:ENST00000436227.5:ENST00000421541.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	89	2	2.82967	2.961125	3.09258	0.00189968	8.09686e-4	0.0402736	0.0263656
chr8	140745763	140745862	4077483	0	-	0.535354	(0.515,0.57]	chr8	370408	6	INTRON	INTRON	PTK2	ENSG00000169398.20	ENST00000696786.1:ENST00000522684.5:ENST00000395218.3:ENST00000519654.5:ENST00000521059.5:ENST00000517887.5:ENST00000519465.5:ENST00000519993.5:ENST00000340930.7:ENST00000523539.5:ENST00000519419.5:ENST00000524202.5:ENST00000521986.5:ENST00000521250.5:ENST00000521981.5:ENST00000521029.5:ENST00000520151.5:ENST00000523670.5:ENST00000519024.5:ENST00000523746.5:ENST00000510126.2:ENST00000523474.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	72	2	2.7208	2.961105	3.20141	0.00306828	2.65803e-4	0.0494933	0.0144243
chrX	53655926	53656026	7821601	0	-	0.35	(0.32,0.35]	chrX	798234	14	INTRON	INTRON	HUWE1	ENSG00000086758.16	ENST00000262854.11:ENST00000342160.7:ENST00000218328.12:ENST00000446750.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	54	2	2.89743	2.961065	3.0247	0.0127608	0.00671684	0.0926667	0.0738715
chr7	121154841	121154941	3395317	0	+	0.29	(0.28,0.32]	chr7	317781	48	INTRON	INTRON	CPED1	ENSG00000106034.18	ENST00000310396.10:ENST00000450913.6:ENST00000423795.5:ENST00000466055.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	215	2	2.57123	2.961055	3.35088	3.086e-4	1.01125e-4	0.0157366	0.00906611
chr21	46278903	46279001	7471359	0	-	0.561224	(0.515,0.57]	chr21	761689	8	INTRON	INTRON	MCM3AP	ENSG00000160294.11	ENST00000397708.1:ENST00000291688.6	protein_coding	protein_coding	protein_coding	protein_coding	4	72	2	2.9572600000000002	2.960965	2.96467	0.00108918	8.94279e-4	0.0303873	0.0273458
chr1	50927479	50927579	451928	0	-	0.48	(0.476,0.515]	chr1	54267	691	INTRON	INTRON	FAF1	ENSG00000185104.21	ENST00000396153.7:ENST00000487898.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	63	2	2.62236	2.9608749999999997	3.29939	0.00517	0.00211868	0.0631506	0.0425644
chr5	39070111	39070211	2605605	0	-	0.42	(0.408,0.44]	chr5	247896	486	INTRON	INTRON	RICTOR	ENSG00000164327.13	ENST00000357387.8:ENST00000511516.5:ENST00000296782.9:ENST00000510711.5:ENST00000513566.1:ENST00000514735.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	86	2	2.32619	2.9608749999999997	3.59556	0.00239266	8.33275e-4	0.0450826	0.0266389
chr1	8805759	8805859	373666	0	-	0.44	(0.408,0.44]	chr1	43555	128	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000656437.1:ENST00000659924.1	protein_coding	protein_coding	protein_coding	protein_coding	2	32	2	1.81572	2.96083	4.10594	0.0626779	0.0219367	0.175915	0.123836
chr2	28254257	28254357	723795	0	+	0.44	(0.408,0.44]	chr2	83690	90	INTRON	INTRON	BABAM2	ENSG00000158019.21	ENST00000344773.6:ENST00000379624.6:ENST00000342045.6:ENST00000379632.6:ENST00000361704.6	protein_coding	protein_coding	protein_coding	protein_coding	2	32	2	1.81572	2.96083	4.10594	0.0626779	0.0219367	0.175915	0.123836
chr9	128834226	128834326	4359292	0	-	0.43	(0.408,0.44]	chr9	400700	4	SS3_PROX	SS3_PROX:INTRON	KYAT1	ENSG00000171097.14	ENST00000462722.5:ENST00000302586.8:ENST00000320665.10:ENST00000483599.5:ENST00000436267.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	32	2	1.81572	2.96083	4.10594	0.0626779	0.0219367	0.175915	0.123836
chr1	61091078	61091178	127478	0	+	0.33	(0.32,0.35]	chr1	14770	25	EXON_MRNA	EXON_MRNA:INTRON	NFIA	ENSG00000162599.17	ENST00000371191.5:ENST00000664495.1:ENST00000476646.5:ENST00000407417.7:ENST00000479364.1:ENST00000371189.8:ENST00000670151.1:ENST00000664149.1:ENST00000662015.1:ENST00000403491.8:ENST00000371187.7:ENST00000485903.6:ENST00000371185.6:ENST00000371184.6:ENST00000603233.2:ENST00000496712.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	87	2	2.53533	2.960725	3.38612	0.00249604	0.00233994	0.0446195	0.0442989
chr1	27474896	27474996	406612	0	-	0.45	(0.44,0.476]	chr1	48986	456	INTRON	INTRON	WASF2	ENSG00000158195.11	ENST00000618852.5:ENST00000536657.1	protein_coding	protein_coding	protein_coding	protein_coding	7	138	2	2.54687	2.960545	3.37422	0.0011	2.11504e-5	0.030486	0.00355554
chr12	51001133	51001231	5324528	0	-	0.459184	(0.44,0.476]	chr12	507702	1	INTRON	INTRON	SLC11A2	ENSG00000110911.17	ENST00000547688.7:ENST00000644495.1:ENST00000643884.1:ENST00000546636.5:ENST00000547198.5:ENST00000394904.9:ENST00000262052.9:ENST00000643123.1:ENST00000646740.1:ENST00000642227.1:ENST00000541174.6:ENST00000545993.7:ENST00000546743.5:ENST00000547510.5:ENST00000546488.5:ENST00000547579.5:ENST00000550714.5:ENST00000547732.5:ENST00000549110.5:ENST00000548193.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	48	2	2.46135	2.96046	3.45957	0.0374637	0.00106385	0.140008	0.0300133
chr1	22528478	22528578	43729	0	+	0.42	(0.408,0.44]	chr1	5246	22	UTR3	UTR3:EXON_MRNA	ZBTB40	ENSG00000184677.18	ENST00000404138.5:ENST00000374651.8:ENST00000375647.5	protein_coding	protein_coding	protein_coding	protein_coding	6	118	2	2.60638	2.9603650000000004	3.31435	8.5078e-4	1.71418e-4	0.0267428	0.0113605
chr7	152834090	152834190	3451272	0	+	0.28	[0,0.28]	chr7	322567	86	INTRON	INTRON	ACTR3B	ENSG00000133627.18	ENST00000377776.7:ENST00000256001.13:ENST00000397282.2:ENST00000479402.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	138	2	1.95937	2.960245	3.96112	0.00946983	4.33342e-4	0.0863579	0.0190829
chr1	150330031	150330124	221434	0	+	0.483871	(0.476,0.515]	chr1	24977	4	EXON_LNCRNA	EXON_LNCRNA:INTRON	PRPF3	ENSG00000117360.13	ENST00000496202.5:ENST00000324862.7:ENST00000467329.5:ENST00000467514.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	100	2	2.53419	2.9602250000000003	3.38626	0.00251905	1.1754e-4	0.0446195	0.00930356
chr16	23920138	23920238	6324602	0	+	0.34	(0.32,0.35]	chr16	605701	264	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000498739.1	protein_coding	protein_coding	protein_coding	protein_coding	22	486	2	2.37448	2.96012	3.54576	2.50764e-4	8.74284e-8	0.0146456	1.27261e-4
chr12	110299732	110299832	5226287	0	+	0.45	(0.44,0.476]	chr12	495250	26	INTRON	INTRON	ATP2A2	ENSG00000174437.18	ENST00000308664.10:ENST00000539276.7:ENST00000377685.9:ENST00000548169.2:ENST00000550248.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	115	2	2.36262	2.9600600000000004	3.5575	0.00255041	4.3292e-5	0.0449067	0.00532052
chr5	119274304	119274404	2461653	0	+	0.36	(0.35,0.378]	chr5	235842	50	INTRON	INTRON	TNFAIP8	ENSG00000145779.8	ENST00000274456.6:ENST00000388882.5	protein_coding	protein_coding	protein_coding	protein_coding	2	51	2	2.92952	2.95998	2.99044	0.00894806	0.00881187	0.084878	0.0799922
chr6	122521771	122521871	2948169	0	+	0.37	(0.35,0.378]	chr6	277524	284	INTRON	INTRON	PKIB	ENSG00000135549.16	ENST00000615438.4:ENST00000392491.6:ENST00000608895.5:ENST00000618977.4:ENST00000583007.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	51	2	2.92952	2.95998	2.99044	0.00894806	0.00881187	0.084878	0.0799922
chr6	149545735	149545835	3245568	0	-	0.53	(0.515,0.57]	chr6	301539	4	SS5_PROX	SS5_PROX:INTRON	PPIL4	ENSG00000131013.4	ENST00000253329.3	protein_coding	protein_coding	protein_coding	protein_coding	3	54	2	2.82994	2.95998	3.09002	0.00491099	0.00168661	0.0609494	0.0381778
chr3	9365520	9365620	1358656	0	+	0.37	(0.35,0.378]	chr3	142602	2	SS5_PROX	SS5_PROX:INTRON	THUMPD3	ENSG00000134077.16	ENST00000419437.5:ENST00000345094.7:ENST00000452837.7:ENST00000515662.6	protein_coding	protein_coding	protein_coding	protein_coding	5	93	2	2.21686	2.95991	3.70296	0.00414535	6.20319e-4	0.0589266	0.0229151
chr6	110896588	110896688	2939173	0	+	0.41	(0.408,0.44]	chr6	276798	27	UTR3	UTR3:EXON_MRNA	AMD1	ENSG00000123505.19	ENST00000672937.2	protein_coding	protein_coding	protein_coding	protein_coding	2	33	2	1.94273	2.95976	3.97679	0.0456237	0.0299485	0.149888	0.142135
chr6	136732376	136732476	3235040	0	-	0.43	(0.408,0.44]	chr6	300700	114	INTRON	INTRON	MAP3K5	ENSG00000197442.10	ENST00000359015.5	protein_coding	protein_coding	protein_coding	protein_coding	2	33	2	1.94273	2.95976	3.97679	0.0456237	0.0299485	0.149888	0.142135
chrX	101044155	101044254	7855205	0	-	0.535354	(0.515,0.57]	chrX	800835	1	INTRON	INTRON	TRMT2B:TRMT2B-AS1	ENSG00000188917.15:ENSG00000225839.2	ENST00000545398.5:ENST00000372936.4:ENST00000372939.5:ENST00000372935.5:ENST00000478422.1:ENST00000443801.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA:processed_transcript	4	65	2	2.11384	2.9595200000000004	3.8052	0.0118599	1.67082e-4	0.0899583	0.0111796
chr1	108958948	108959048	519133	0	-	0.47	(0.44,0.476]	chr1	60930	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	CLCC1	ENSG00000121940.17	ENST00000690509.1:ENST00000687328.1:ENST00000685014.1:ENST00000685540.1:ENST00000686576.1:ENST00000688070.1:ENST00000691513.1:ENST00000686821.1:ENST00000692511.1:ENST00000689479.1:ENST00000687646.1:ENST00000687998.1:ENST00000687226.1:ENST00000693336.1:ENST00000689991.1:ENST00000687591.1:ENST00000691777.1:ENST00000690756.1:ENST00000688778.1:ENST00000685104.1:ENST00000689103.1:ENST00000687734.1:ENST00000686434.1:ENST00000685497.1:ENST00000691342.1:ENST00000686776.1:ENST00000692342.1:ENST00000689351.1:ENST00000692584.1:ENST00000692775.1:ENST00000687134.1:ENST00000675018.1:ENST00000690781.1:ENST00000691556.1:ENST00000689189.1:ENST00000687099.1:ENST00000685791.1:ENST00000687865.1:ENST00000687449.1:ENST00000688285.1:ENST00000369968.7:ENST00000674992.1:ENST00000675001.1:ENST00000369969.7:ENST00000356970.6:ENST00000688610.1:ENST00000675128.1:ENST00000693089.1:ENST00000675571.1:ENST00000675650.1:ENST00000369970.8:ENST00000674561.2:ENST00000675654.1:ENST00000675790.1:ENST00000675584.1:ENST00000692795.1:ENST00000691731.1:ENST00000689359.1:ENST00000676392.2:ENST00000676391.2:ENST00000676454.1:ENST00000674849.1:ENST00000675956.1:ENST00000302500.5:ENST00000675508.1:ENST00000688168.1:ENST00000693673.1:ENST00000692404.1:ENST00000686078.1:ENST00000690874.1:ENST00000692732.1:ENST00000685628.1:ENST00000676306.1:ENST00000676059.2:ENST00000674527.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	138	2	2.52508	2.95951	3.39394	0.00121905	1.86601e-5	0.0319984	0.00329969
chr1	155730756	155730855	229944	0	+	0.40404	(0.378,0.408]	chr1	27049	10	INTRON	INTRON	DAP3	ENSG00000132676.16	ENST00000471642.6:ENST00000471214.5:ENST00000343043.7:ENST00000368336.10:ENST00000535183.5:ENST00000421487.6:ENST00000497826.5:ENST00000479151.5:ENST00000462978.1:ENST00000477394.5:ENST00000475056.5:ENST00000490249.5:ENST00000497433.1:ENST00000463295.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	33	2	1.8252	2.959495	4.09379	0.0619563	0.023912	0.174514	0.129075
chr16	16551199	16551299	6311374	0	+	0.5	(0.476,0.515]	chr16	604098	512	INTRON	INTRON	ENSG00000260126	ENSG00000260126.2	ENST00000567465.2	lncRNA	lncRNA	lncRNA	lncRNA	12	240	2	2.38865	2.95947	3.53029	3.58725e-4	1.5729e-6	0.0169207	8.3085e-4
chr11	86060962	86061061	5014762	0	-	0.424242	(0.408,0.44]	chr11	473022	290	INTRON	INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000630913.2:ENST00000528398.5:ENST00000356360.9:ENST00000534412.5:ENST00000531558.1:ENST00000531930.5:ENST00000532041.5:ENST00000525162.5:ENST00000528256.1:ENST00000528411.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	13	215	2	2.3339	2.959455	3.58501	1.80109e-4	1.16484e-5	0.0116696	0.00270022
chr19	32616180	32616280	7169005	0	-	0.47	(0.44,0.476]	chr19	724367	4	SS3_PROX	SS3_PROX:INTRON	ANKRD27	ENSG00000105186.16	ENST00000306065.9	protein_coding	protein_coding	protein_coding	protein_coding	2	47	2	2.60774	2.95942	3.3111	0.0255874	0.0020006	0.120269	0.0412555
chrX	48931689	48931788	7815810	0	-	0.50505	(0.476,0.515]	chrX	796844	53	INTRON	INTRON	OTUD5	ENSG00000068308.15	ENST00000376488.8:ENST00000396743.7:ENST00000455452.5:ENST00000156084.8:ENST00000428668.2:ENST00000484499.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	95	2	1.9127	2.95933	4.00596	0.00864134	1.1409e-4	0.0840615	0.00960783
chr1	156337240	156337340	566708	0	-	0.57	(0.515,0.57]	chr1	68039	1	SS3_ADJ	SS3_ADJ:SS3_PROX:SS5_PROX:INTRON	CCT3	ENSG00000163468.15	ENST00000295688.8:ENST00000368258.7:ENST00000368259.6:ENST00000368262.7:ENST00000472765.6:ENST00000413555.5:ENST00000496684.6:ENST00000533194.5:ENST00000463132.5:ENST00000446905.5:ENST00000478640.6:ENST00000415548.1:ENST00000368256.3:ENST00000489870.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	66	2	2.4386	2.959095	3.47959	0.00326739	8.38022e-4	0.0508595	0.0263691
chr15	63654624	63654724	6199047	0	-	0.46	(0.44,0.476]	chr15	591159	3	SS3_PROX	SS3_PROX:INTRON	HERC1	ENSG00000103657.14	ENST00000443617.7	protein_coding	protein_coding	protein_coding	protein_coding	2	47	2	2.89047	2.95899	3.02751	0.00955699	0.00715968	0.0863913	0.0723634
chr19	11940071	11940171	7019903	0	+	0.47	(0.44,0.476]	chr19	697884	144	INTRON	INTRON	ZNF700	ENSG00000196757.8	ENST00000622593.4:ENST00000254321.10	protein_coding	protein_coding	protein_coding	protein_coding	2	47	2	2.89047	2.95899	3.02751	0.00955699	0.00715968	0.0863913	0.0723634
chr22	19113742	19113842	7551928	0	-	0.46	(0.44,0.476]	chr22	771903	239	INTRON	INTRON	DGCR2	ENSG00000070413.20	ENST00000537045.5:ENST00000545799.5:ENST00000263196.12:ENST00000389262.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	47	2	2.89047	2.95899	3.02751	0.00955699	0.00715968	0.0863913	0.0723634
chr2	55232677	55232750	781592	0	+	0.589041	(0.57,1]	chr2	87981	1	UTR5	UTR5:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPS27A	ENSG00000143947.15	ENST00000402285.7:ENST00000449323.5:ENST00000404735.1:ENST00000463185.1:ENST00000272317.11:ENST00000471772.6:ENST00000478196.6:ENST00000494756.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	32	316	2	2.72322	2.95894	3.19466	2.87361e-6	1.01871e-9	0.00119813	7.69613e-6
chr1	1570492	1570592	360279	0	-	0.61	(0.57,1]	chr1	41853	52	INTRON	INTRON	SSU72	ENSG00000160075.12	ENST00000291386.4:ENST00000378725.3:ENST00000359060.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	34	2	2.73474	2.95887	3.183	0.00254356	0.00241874	0.0454275	0.0448135
chr16	20741308	20741408	6459079	0	-	0.63	(0.57,1]	chr16	623049	4	SS5_PROX	SS5_PROX:INTRON	THUMPD1	ENSG00000066654.14	ENST00000636554.1:ENST00000381337.6:ENST00000396083.7:ENST00000565248.1:ENST00000569768.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	34	2	2.56996	2.958735	3.34751	0.00499145	0.00122677	0.0646039	0.0320791
chr17	70125268	70125368	6828701	0	-	0.41	(0.408,0.44]	chr17	675009	521	INTRON	INTRON	ENSG00000230258	ENSG00000230258.6	ENST00000435112.5	lncRNA	lncRNA	lncRNA	lncRNA	8	154	2	2.84658	2.9587	3.07082	2.09358e-4	6.92323e-5	0.0131276	0.006896
chr5	43297666	43297746	2614272	0	-	0.4875	(0.476,0.515]	chr5	248512	1	SS5_PROX	SS5_PROX:INTRON	HMGCS1	ENSG00000112972.15	ENST00000325110.11:ENST00000433297.2	protein_coding	protein_coding	protein_coding	protein_coding	11	168	2	2.02236	2.95866	3.89496	0.00143289	9.98622e-6	0.0347139	0.00245866
chr7	102417150	102417250	3371618	0	+	0.45	(0.44,0.476]	chr7	315478	93	INTRON	INTRON	PRKRIP1	ENSG00000128563.13	ENST00000469763.5:ENST00000482549.5:ENST00000496391.5:ENST00000482465.5:ENST00000462601.5:ENST00000397912.3:ENST00000468316.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	34	2	2.08277	2.9585850000000002	3.8344	0.041276	0.0309998	0.161534	0.13151
chr3	152447431	152447519	1536784	0	+	0.329545	(0.32,0.35]	chr3	160036	3	SS3_PROX	SS3_PROX:INTRON	MBNL1	ENSG00000152601.18	ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000324210.10:ENST00000493459.5:ENST00000545754.5:ENST00000357472.7:ENST00000324196.9:ENST00000498502.5:ENST00000463374.5:ENST00000485910.5:ENST00000465907.6:ENST00000492948.5:ENST00000485509.5:ENST00000464596.5:ENST00000478535.1:ENST00000460166.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	87	2	2.56589	2.958525	3.35116	0.00283808	0.00204522	0.0473151	0.041908
chr12	89706595	89706695	5381941	0	-	0.37	(0.35,0.378]	chr12	513429	501	INTRON	INTRON	ATP2B1	ENSG00000070961.16	ENST00000428670.8:ENST00000551310.1	protein_coding	protein_coding	protein_coding	protein_coding	2	30	2	1.82887	2.9585150000000002	4.08816	0.0584878	0.046021	0.189395	0.149888
chr12	50446012	50446112	5136797	0	+	0.58	(0.57,1]	chr12	484418	40	INTRON	INTRON	LARP4	ENSG00000161813.23	ENST00000293618.12:ENST00000429001.7:ENST00000398473.7:ENST00000522085.5:ENST00000518444.5:ENST00000518561.5:ENST00000347328.9:ENST00000520064.2:ENST00000521120.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	26	2	2.78409	2.958315	3.13254	0.0116033	0.00310655	0.0889104	0.0512344
chr22	20493717	20493813	7557510	0	-	0.4375	(0.408,0.44]	chr22	772824	1	INTRON	INTRON	KLHL22	ENSG00000099910.17	ENST00000328879.9:ENST00000479601.5:ENST00000451553.1:ENST00000444967.5:ENST00000458248.5:ENST00000443285.5:ENST00000494929.5:ENST00000431430.1:ENST00000470335.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	10	165	2	2.14822	2.958255	3.76829	0.0013943200000000001	1.18617e-5	0.0340865	0.0025447
chr1	108697601	108697699	178184	0	+	0.316327	(0.28,0.32]	chr1	19360	2	INTRON	INTRON	PRPF38B	ENSG00000134186.12	ENST00000370025.9:ENST00000370021.1	protein_coding	protein_coding	protein_coding	protein_coding	8	200	2	2.51687	2.95817	3.39947	6.83039e-4	7.93615e-5	0.023795	0.00800892
chrX	52899152	52899249	7663560	0	+	0.494845	(0.476,0.515]	chrX	784614	20	UTR5	UTR5:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	FAM156B	ENSG00000179304.18	ENST00000610405.4:ENST00000619346.4:ENST00000610609.4:ENST00000612188.4:ENST00000616419.4:ENST00000416841.8:ENST00000593751.7	protein_coding	protein_coding	protein_coding	protein_coding	7	137	2	2.65814	2.95817	3.2582	6.21095e-4	4.43501e-5	0.0229151	0.00540124
chrX	123694234	123694333	7878661	0	-	0.414141	(0.408,0.44]	chrX	802557	72	INTRON	INTRON	THOC2	ENSG00000125676.20	ENST00000245838.13:ENST00000355725.8:ENST00000491737.5:ENST00000433883.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	75	2	2.46587	2.95803	3.45019	0.00280622	0.00152664	0.0488779	0.0353936
chr11	76473240	76473340	4835787	0	+	0.38	(0.378,0.408]	chr11	451074	4	SS5_PROX	SS5_PROX:INTRON	EMSY	ENSG00000158636.17	ENST00000427574.6:ENST00000695367.1:ENST00000334736.7:ENST00000524490.5:ENST00000533972.5:ENST00000525038.5:ENST00000524767.5:ENST00000525919.5:ENST00000533248.5:ENST00000529032.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	80	2	1.82258	2.9580200000000003	4.09346	0.0341279	4.66745e-5	0.135102	0.00555772
chr16	88728946	88729044	6539627	0	-	0.581633	(0.57,1]	chr16	633912	9	INTRON	INTRON	PIEZO1	ENSG00000103335.22	ENST00000301015.14	protein_coding	protein_coding	protein_coding	protein_coding	5	53	2	2.86696	2.95801	3.04906	4.97245e-4	2.88184e-4	0.0206993	0.0150627
chr14	103339803	103339903	5825559	0	+	0.44	(0.408,0.44]	chr14	552758	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	EIF5	ENSG00000100664.11	ENST00000216554.8:ENST00000392715.6:ENST00000558506.1:ENST00000561380.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	141	2	2.16948	2.957985	3.74649	0.00236307	1.36138e-5	0.0437545	0.00275678
chr3	49988257	49988357	1423442	0	+	0.52	(0.515,0.57]	chr3	149988	62	INTRON	INTRON	RBM6	ENSG00000004534.15	ENST00000442092.5:ENST00000443081.5:ENST00000419610.5:ENST00000441115.5:ENST00000422955.5:ENST00000454079.5:ENST00000266022.9:ENST00000425608.5:ENST00000434592.5:ENST00000464013.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	54	2	2.38476	2.957805	3.53085	0.0110593	6.59951e-4	0.0873897	0.0232396
chr4	73207892	73207992	2160317	0	-	0.56	(0.515,0.57]	chr4	212794	300	INTRON	INTRON	ANKRD17	ENSG00000132466.20	ENST00000358602.9:ENST00000558247.5:ENST00000330838.10:ENST00000509867.6:ENST00000561029.1:ENST00000559367.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	42	2	2.43589	2.9577400000000003	3.47959	0.0370871	8.38022e-4	0.139194	0.0263691
chr19	579034	579127	6991910	0	+	0.55914	(0.515,0.57]	chr19	692154	3	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	BSG	ENSG00000172270.22	ENST00000545507.6:ENST00000346916.9:ENST00000680065.1:ENST00000679472.1:ENST00000680552.1:ENST00000613627.5:ENST00000576925.4:ENST00000573216.5:ENST00000572899.6:ENST00000333511.9:ENST00000353555.9:ENST00000680326.1:ENST00000618006.4:ENST00000614867.2:ENST00000618112.4:ENST00000573784.6:ENST00000574970.2:ENST00000576984.3:ENST00000571735.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	31	2	1.60221	2.9577349999999996	4.31326	0.0581855	0.0141817	0.188704	0.0959618
chrX	71540869	71540969	7680025	0	+	0.57	(0.515,0.57]	chrX	786397	24	INTRON	INTRON	OGT	ENSG00000147162.14	ENST00000373719.8:ENST00000488174.5:ENST00000373701.7:ENST00000498566.3:ENST00000444774.3:ENST00000455587.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	31	2	1.60221	2.9577349999999996	4.31326	0.0581855	0.0141817	0.188704	0.0959618
chr1	66957558	66957658	139769	0	+	0.33	(0.32,0.35]	chr1	15663	1	SS3_PROX	SS3_PROX:INTRON	MIER1	ENSG00000198160.15	ENST00000355977.10:ENST00000371018.7:ENST00000357692.6:ENST00000371016.5:ENST00000371014.5:ENST00000401041.6:ENST00000355356.3:ENST00000401042.7:ENST00000479067.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	45	2	1.54741	2.95748	4.36755	0.0473733	0.0300552	0.169265	0.129138
chr5	94661499	94661598	2429351	0	+	0.454545	(0.44,0.476]	chr5	233420	64	INTRON	INTRON	SLF1	ENSG00000133302.13	ENST00000265140.10:ENST00000466957.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	64	2	2.33272	2.9574550000000004	3.58219	0.0129984	8.57842e-4	0.0991656	0.0267428
chr1	35977669	35977768	71616	0	+	0.383838	(0.378,0.408]	chr1	9158	38	INTRON	INTRON	AGO3	ENSG00000126070.20	ENST00000324350.9:ENST00000397828.3:ENST00000634486.1:ENST00000373191.9:ENST00000246314.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	49	2	2.53503	2.9573650000000002	3.3797	0.0319942	0.00154501	0.13174	0.0362716
chr6	107941499	107941599	3182680	0	-	0.31	(0.28,0.32]	chr6	296463	116	INTRON	INTRON	SEC63	ENSG00000025796.14	ENST00000369002.9:ENST00000429168.1:ENST00000484803.5:ENST00000446496.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	108	2	2.3365	2.95729	3.57808	0.00286158	0.00141407	0.0494641	0.0340865
chr1	12027154	12027253	26902	0	+	0.484848	(0.476,0.515]	chr1	3206	39	INTRON	INTRON	MIIP	ENSG00000116691.11	ENST00000478749.5:ENST00000235332.6:ENST00000466860.5:ENST00000498685.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	78	2	1.7425	2.95722	4.17194	0.0417334	2.87271e-5	0.147007	0.00424646
chrX	48949780	48949879	7815995	0	-	0.555556	(0.515,0.57]	chrX	796867	51	INTRON	INTRON	OTUD5	ENSG00000068308.15	ENST00000376488.8:ENST00000396743.7:ENST00000455452.5:ENST00000156084.8:ENST00000428668.2:ENST00000484499.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	72	2	2.92115	2.957155	2.99316	0.00110258	9.21623e-4	0.03038	0.0278396
chr7	127993623	127993722	3405840	0	+	0.393939	(0.378,0.408]	chr7	318184	22	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000486037.1:ENST00000484767.5:ENST00000470723.5:ENST00000467238.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	65	2	2.90835	2.957015	3.00568	0.00811866	0.00133715	0.0766625	0.0335955
chr17	21005761	21005852	6742778	0	-	0.43956	(0.408,0.44]	chr17	662010	4	INTRON	INTRON	USP22	ENSG00000124422.12	ENST00000261497.9:ENST00000537526.6:ENST00000455117.6:ENST00000579645.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	63	2	2.40661	2.95696	3.50731	0.011475	8.5918e-4	0.0888882	0.0265787
chr4	139579	139679	1905796	0	+	0.37	(0.35,0.378]	chr4	191032	77	INTRON	INTRON	ZNF718	ENSG00000250312.8	ENST00000642529.1:ENST00000510175.6:ENST00000609714.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	69	2	2.59656	2.95696	3.31736	0.00638551	0.00211072	0.0693551	0.0425419
chr8	43026832	43026931	3745583	0	+	0.373737	(0.35,0.378]	chr8	348501	85	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	HOOK3	ENSG00000168172.9	ENST00000307602.9:ENST00000533338.1	protein_coding	protein_coding	protein_coding	protein_coding	3	69	2	2.59656	2.95696	3.31736	0.00638551	0.00211072	0.0693551	0.0425419
chr17	81545155	81545245	6848665	0	-	0.555556	(0.515,0.57]	chr17	678055	7	INTRON	INTRON	FAAP100	ENSG00000185504.17	ENST00000443656.6:ENST00000425898.2:ENST00000327787.13:ENST00000545865.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	42	2	2.65834	2.956905	3.25547	0.0187418	0.00261721	0.117523	0.0455413
chr20	32764557	32764657	7256670	0	+	0.53	(0.515,0.57]	chr20	737113	13	INTRON	INTRON	DNMT3B	ENSG00000088305.19	ENST00000696232.1:ENST00000328111.6:ENST00000696231.1:ENST00000348286.6:ENST00000353855.6:ENST00000696233.1:ENST00000443239.7:ENST00000696234.1:ENST00000696235.1:ENST00000456297.6:ENST00000696236.1:ENST00000696237.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	42	2	2.65834	2.956905	3.25547	0.0187418	0.00261721	0.117523	0.0455413
chr18	741746	741842	6939990	0	-	0.40625	(0.378,0.408]	chr18	686473	16	INTRON	INTRON	YES1	ENSG00000176105.14	ENST00000584307.5:ENST00000314574.5:ENST00000577961.5	protein_coding	protein_coding	protein_coding	protein_coding	5	105	2	2.66588	2.95689	3.2479	0.00156732	2.54231e-4	0.0360728	0.0142045
chr17	46179427	46179527	6784735	0	-	0.43	(0.408,0.44]	chr17	669245	68	INTRON	INTRON	KANSL1	ENSG00000120071.15	ENST00000574590.6:ENST00000572904.6:ENST00000432791.7:ENST00000575318.6:ENST00000638275.1:ENST00000262419.10:ENST00000648792.1:ENST00000639150.1:ENST00000571698.2:ENST00000639375.1:ENST00000638269.1:ENST00000639356.1:ENST00000574655.6:ENST00000639099.1:ENST00000638902.1:ENST00000576739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	47	2	2.6542	2.9568399999999997	3.25948	0.0227514	0.00246454	0.117618	0.0459102
chr7	119832249	119832349	3629663	0	-	0.41	(0.408,0.44]	chr7	337335	310	INTRON	INTRON	LINC02476	ENSG00000225546.6	ENST00000660268.1:ENST00000431071.5:ENST00000426413.2	lncRNA	lncRNA	lncRNA	lncRNA	2	47	2	2.6542	2.9568399999999997	3.25948	0.0227514	0.00246454	0.117618	0.0459102
chr13	95239412	95239511	5639253	0	-	0.393939	(0.378,0.408]	chr13	537157	42	INTRON	INTRON	ABCC4	ENSG00000125257.16	ENST00000645237.2:ENST00000643051.1:ENST00000643842.1:ENST00000646439.1:ENST00000643816.1:ENST00000536256.3:ENST00000643556.1:ENST00000629385.1:ENST00000642524.1:ENST00000645532.1:ENST00000644471.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	46	2	1.41307	2.956815	4.50056	0.0510067	0.015974	0.176593	0.101453
chr1	55143519	55143619	465158	0	-	0.39	(0.378,0.408]	chr1	56176	4	SS3_PROX	SS3_PROX:INTRON	USP24	ENSG00000162402.14	ENST00000294383.7	protein_coding	protein_coding	protein_coding	protein_coding	2	49	2	2.85854	2.95678	3.05502	0.0107837	0.00689519	0.0920575	0.0717484
chr1	153875627	153875727	557292	0	-	0.38	(0.378,0.408]	chr1	65983	469	INTRON	INTRON	GATAD2B	ENSG00000143614.10	ENST00000368655.5:ENST00000634544.1:ENST00000634408.1:ENST00000634401.1:ENST00000634791.1:ENST00000636014.1:ENST00000637331.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	126	2	2.93406	2.956765	2.97947	4.52418e-4	2.2808e-4	0.019684	0.0133228
chr12	57395148	57395248	5338899	0	-	0.52	(0.515,0.57]	chr12	510710	538	INTRON	INTRON	R3HDM2	ENSG00000179912.21	ENST00000402412.6:ENST00000347140.7:ENST00000634871.1:ENST00000448732.1	protein_coding	protein_coding	protein_coding	protein_coding	7	90	2	1.67927	2.95676	4.23425	0.0157733	1.40595e-5	0.101453	0.00279379
chr17	63798694	63798789	6661209	0	+	0.389474	(0.378,0.408]	chr17	649965	2	INTRON	INTRON	DDX42	ENSG00000198231.14	ENST00000578681.5:ENST00000583590.5:ENST00000389924.7:ENST00000359353.9:ENST00000578137.5:ENST00000584261.5:ENST00000577940.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	243	2	2.5728	2.95671	3.34062	3.4905e-4	1.22458e-6	0.017404	6.44529e-4
chr17	75213715	75213811	6674344	0	+	0.46875	(0.44,0.476]	chr17	651367	2	INTRON	INTRON	NUP85	ENSG00000125450.11	ENST00000583569.5:ENST00000245544.9:ENST00000583948.5:ENST00000579324.5:ENST00000449421.6:ENST00000581104.5:ENST00000579298.5:ENST00000583548.1:ENST00000577208.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	62	2	2.64669	2.95669	3.26669	0.0040295	0.00305435	0.0578376	0.0493883
chr3	43509421	43509521	1674308	0	-	0.34	(0.32,0.35]	chr3	170972	763	INTRON	INTRON	ANO10	ENSG00000160746.13	ENST00000292246.8:ENST00000350459.8:ENST00000396091.7:ENST00000414522.6:ENST00000451430.6:ENST00000448045.1	protein_coding	protein_coding	protein_coding	protein_coding	2	54	2	2.6321	2.956585	3.28107	0.0268	0.00262488	0.123349	0.0470772
chr4	139107144	139107244	2246640	0	-	0.33	(0.32,0.35]	chr4	219568	44	INTRON	INTRON	ELF2	ENSG00000109381.21	ENST00000394235.6:ENST00000686138.1:ENST00000379550.5:ENST00000511184.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	54	2	2.6321	2.956585	3.28107	0.0268	0.00262488	0.123349	0.0470772
chr2	167913154	167913254	1258934	0	-	0.4	(0.378,0.408]	chr2	133340	120	INTRON	INTRON	B3GALT1-AS1	ENSG00000235335.3	ENST00000430546.2:ENST00000657553.1:ENST00000670221.1:ENST00000436982.2	lncRNA	lncRNA	lncRNA	lncRNA	3	65	2	2.35103	2.956555	3.56208	0.014158	6.94246e-4	0.0959618	0.0240761
chr11	47819273	47819373	4951868	0	-	0.39	(0.378,0.408]	chr11	464594	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	NUP160	ENSG00000030066.14	ENST00000694866.1:ENST00000378460.7:ENST00000530326.5:ENST00000528071.5:ENST00000528501.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	65	2	2.39444	2.9565200000000003	3.5186	0.0122858	8.45009e-4	0.091087	0.0263813
chr10	914397	914497	4542414	0	-	0.48	(0.476,0.515]	chr10	419304	110	INTRON	INTRON	LARP4B	ENSG00000107929.16	ENST00000316157.8:ENST00000690516.1:ENST00000476529.5:ENST00000406525.6:ENST00000481118.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	62	2	2.53671	2.956515	3.37632	0.00624027	0.00195267	0.0718843	0.0400465
chr6	157391161	157391261	3011642	0	+	0.48	(0.476,0.515]	chr6	281268	85	INTRON	INTRON	ZDHHC14	ENSG00000175048.17	ENST00000414563.6:ENST00000359775.10	protein_coding	protein_coding	protein_coding	protein_coding	3	62	2	2.53671	2.956515	3.37632	0.00624027	0.00195267	0.0718843	0.0400465
chr3	48541626	48541723	1688760	0	-	0.350515	(0.35,0.378]	chr3	172560	15	INTRON	INTRON	PFKFB4	ENSG00000114268.12	ENST00000232375.8:ENST00000490115.5:ENST00000383734.6:ENST00000416568.5:ENST00000417753.5:ENST00000445633.5:ENST00000452531.5:ENST00000468162.5:ENST00000412035.5:ENST00000471890.6:ENST00000496767.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	95	2	1.71411	2.956325	4.19854	0.0310697	2.91516e-5	0.13151	0.00428471
chr16	29589394	29589494	6471494	0	-	0.42	(0.408,0.44]	chr16	625297	197	INTRON	INTRON	ENSG00000288632:SMG1P2	ENSG00000288632.1:ENSG00000205534.6	ENST00000675579.1:ENST00000566127.1	lncRNA	lncRNA	lncRNA:transcribed_unprocessed_pseudogene	lncRNA:transcribed_unprocessed_pseudogene	5	101	2	2.54014	2.95629	3.37244	0.00255945	1.2469e-4	0.0450085	0.00953295
chr19	10671935	10672035	7013395	0	+	0.53	(0.515,0.57]	chr19	696779	4	SS5_PROX	SS5_PROX:INTRON	ILF3	ENSG00000129351.17	ENST00000449870.5:ENST00000587928.5:ENST00000407004.7:ENST00000589998.5:ENST00000589600.5:ENST00000590009.5:ENST00000587505.5:ENST00000589052.5:ENST00000250241.12:ENST00000590261.5:ENST00000588657.5:ENST00000592763.5:ENST00000587840.5:ENST00000589416.5:ENST00000585835.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	55	2	2.7208	2.95629	3.19178	0.00306828	0.00289534	0.0494933	0.0494641
chr1	36254192	36254292	73229	0	+	0.35	(0.32,0.35]	chr1	9371	284	INTRON	INTRON	THRAP3	ENSG00000054118.15	ENST00000469141.6:ENST00000648638.1:ENST00000354618.10	protein_coding	protein_coding	protein_coding	protein_coding	2	54	2	2.9451	2.95628	2.96746	0.011051	0.00815799	0.0873897	0.0810802
chr2	208707376	208707476	996471	0	+	0.34	(0.32,0.35]	chr2	106920	500	INTRON	INTRON	PTH2R	ENSG00000144407.10	ENST00000419079.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	2	54	2	2.9451	2.95628	2.96746	0.011051	0.00815799	0.0873897	0.0810802
chr7	97135687	97135787	3357138	0	+	0.52	(0.515,0.57]	chr7	313205	174	INTRON	INTRON	SDHAF3	ENSG00000196636.8	ENST00000432641.3:ENST00000489852.1:ENST00000360382.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	134	2	2.8066	2.956265	3.10593	2.14817e-4	2.50623e-5	0.0134211	0.00392664
chr11	68212676	68212754	4973199	0	-	0.615385	(0.57,1]	chr11	469524	2	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	KMT5B	ENSG00000110066.15	ENST00000304363.9:ENST00000427752.6:ENST00000405515.5:ENST00000401547.6:ENST00000402789.5:ENST00000402185.6:ENST00000453170.5:ENST00000458496.1:ENST00000434573.1:ENST00000466295.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	43	2	1.89351	2.956255	4.019	0.0255126	3.13356e-5	0.133676	0.00467101
chr6	47599843	47599943	2874801	0	+	0.31	(0.28,0.32]	chr6	272797	4	SS5_PROX	SS5_PROX:INTRON	CD2AP	ENSG00000198087.7	ENST00000359314.5	protein_coding	protein_coding	protein_coding	protein_coding	4	99	2	2.90847	2.95621	3.00395	0.0101329	4.61348e-4	0.0850389	0.0194611
chr11	68557967	68558065	4818320	0	+	0.244898	[0,0.28]	chr11	448971	34	INTRON	INTRON	PPP6R3	ENSG00000110075.15	ENST00000534534.5:ENST00000524845.5:ENST00000393800.7:ENST00000265637.8:ENST00000524904.5:ENST00000393801.7:ENST00000265636.9:ENST00000529710.5:ENST00000527403.6	protein_coding	protein_coding	protein_coding	protein_coding	4	108	2	2.60532	2.9561349999999997	3.30695	0.00469836	0.00226845	0.0600108	0.0437013
chr13	20847369	20847468	5555788	0	-	0.414141	(0.408,0.44]	chr13	531006	31	INTRON	INTRON	XPO4	ENSG00000132953.18	ENST00000255305.11	protein_coding	protein_coding	protein_coding	protein_coding	3	63	2	2.906	2.955975	3.00595	0.00781452	0.00131817	0.0759016	0.0333932
chr19	17582395	17582490	7031181	0	+	0.452632	(0.44,0.476]	chr19	700288	11	UTR3	UTR3:EXON_MRNA	COLGALT1	ENSG00000130309.12	ENST00000252599.9:ENST00000690947.1:ENST00000690106.1:ENST00000690841.1:ENST00000593832.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	25	472	2	2.81235	2.955895	3.09944	6.03124e-6	8.38826e-7	0.00184594	5.18785e-4
chr3	37064562	37064658	1655491	0	-	0.489583	(0.476,0.515]	chr3	169889	9	EXON_MRNA	EXON_MRNA:INTRON	LRRFIP2	ENSG00000093167.18	ENST00000336686.9:ENST00000354379.8:ENST00000421276.6:ENST00000460646.5:ENST00000496479.5:ENST00000396428.6:ENST00000440230.5:ENST00000440742.2:ENST00000487246.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	114	2	2.76757	2.955835	3.1441	5.63876e-4	2.52719e-4	0.0219303	0.0141489
chr6	37295450	37295549	2855694	0	+	0.343434	(0.32,0.35]	chr6	269985	37	INTRON	INTRON	TBC1D22B	ENSG00000065491.8	ENST00000373491.3	protein_coding	protein_coding	protein_coding	protein_coding	3	72	2	2.7493	2.955835	3.16237	0.00550276	0.00296357	0.0648867	0.0500135
chr21	34088486	34088585	7401242	0	+	0.323232	(0.32,0.35]	chr21	753967	144	INTRON	INTRON	MRPS6:SLC5A3	ENSG00000243927.6:ENSG00000198743.7	ENST00000488492.5:ENST00000477091.5:ENST00000399312.3:ENST00000381151.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	72	2	2.67068	2.955775	3.24087	0.00420518	0.00406276	0.0578984	0.0572185
chr21	45521027	45521127	7469671	0	-	0.38	(0.378,0.408]	chr21	761352	45	INTRON	INTRON	SLC19A1	ENSG00000173638.19	ENST00000417954.5:ENST00000567670.5:ENST00000311124.9:ENST00000650808.1:ENST00000380010.8:ENST00000485649.3	protein_coding	protein_coding	protein_coding	protein_coding	2	34	2	1.94681	2.95576	3.96471	0.0457723	0.032421	0.149888	0.145026
chr7	12390250	12390348	3485304	0	-	0.387755	(0.378,0.408]	chr7	325964	5	INTRON	INTRON	VWDE	ENSG00000146530.15	ENST00000275358.8:ENST00000452576.6:ENST00000521169.5:ENST00000326715.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	34	2	1.94681	2.95576	3.96471	0.0457723	0.032421	0.149888	0.145026
chr12	123289407	123289507	5444421	0	-	0.41	(0.408,0.44]	chr12	520952	4	UTR3	UTR3:EXON_MRNA	SBNO1	ENSG00000139697.14	ENST00000602398.3:ENST00000267176.8:ENST00000420886.6	protein_coding	protein_coding	protein_coding	protein_coding	3	63	2	2.31565	2.955645	3.59564	0.0154718	5.73354e-4	0.100909	0.0217398
chrX	53418728	53418827	7820161	0	-	0.484848	(0.476,0.515]	chrX	797770	32	INTRON	INTRON	SMC1A	ENSG00000072501.19	ENST00000375340.10:ENST00000322213.9:ENST00000675504.1:ENST00000674590.1:ENST00000675065.1:ENST00000463684.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	39	2	1.69138	2.9555100000000003	4.21964	0.0481165	0.0167715	0.153019	0.110511
chr8	38244063	38244161	3735654	0	+	0.479592	(0.476,0.515]	chr8	347117	13	INTRON	INTRON	DDHD2	ENSG00000085788.14	ENST00000397166.7:ENST00000520272.6:ENST00000527415.5:ENST00000532106.1:ENST00000528888.5:ENST00000531344.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	63	2	2.37731	2.9554650000000002	3.53362	0.0111793	0.00102391	0.0937192	0.029231300000000002
chr22	19906313	19906412	7555959	0	-	0.484848	(0.476,0.515]	chr22	772518	69	INTRON	INTRON	TXNRD2	ENSG00000184470.21	ENST00000400518.5:ENST00000542719.6:ENST00000494454.5:ENST00000474308.5:ENST00000400525.6:ENST00000400521.7:ENST00000400519.6:ENST00000635155.1:ENST00000491939.6:ENST00000334363.14:ENST00000475995.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	47	2	2.56033	2.95546	3.35059	0.0287634	0.00171515	0.127066	0.0381936
chr17	47135756	47135855	6788833	0	-	0.313131	(0.28,0.32]	chr17	669537	30	INTRON	INTRON	CDC27	ENSG00000004897.12	ENST00000066544.8:ENST00000531206.5:ENST00000533415.5:ENST00000571643.5:ENST00000527547.5:ENST00000526866.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	106	2	2.71415	2.955355	3.19656	0.005045	4.54565e-4	0.0621586	0.0192381
chr7	112466238	112466338	3381952	0	+	0.25	[0,0.28]	chr7	316806	4	SS5_PROX	SS5_PROX:INTRON	IFRD1	ENSG00000006652.15	ENST00000675578.1:ENST00000621379.4:ENST00000005558.8:ENST00000403825.8:ENST00000674915.1:ENST00000674887.1:ENST00000675041.1:ENST00000675717.1:ENST00000535603.5:ENST00000466459.5:ENST00000421296.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	97	2	2.59548	2.95535	3.31522	0.0346067	3.36598e-4	0.136649	0.0163153
chr16	54758	54858	6271303	0	+	0.58	(0.57,1]	chr16	598266	3	INTRON	INTRON	SNRNP25	ENSG00000161981.11	ENST00000293861.8:ENST00000383018.7:ENST00000397876.6:ENST00000417493.1:ENST00000493672.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	23	2	1.74185	2.95533	4.16881	0.0401765	0.00574776	0.143911	0.0681402
chr2	99353251	99353350	834970	0	+	0.575758	(0.57,1]	chr2	93660	153	INTRON	INTRON	EIF5B	ENSG00000158417.11	ENST00000617677.1:ENST00000289371.11	protein_coding	protein_coding	protein_coding	protein_coding	3	23	2	1.74185	2.95533	4.16881	0.0401765	0.00574776	0.143911	0.0681402
chr11	63715066	63715164	4800251	0	+	0.336735	(0.32,0.35]	chr11	444946	7	INTRON	INTRON	RTN3	ENSG00000133318.14	ENST00000341307.6:ENST00000356000.7:ENST00000542238.5:ENST00000339997.8:ENST00000540798.5:ENST00000537981.5:ENST00000377819.10:ENST00000536011.5:ENST00000543123.1:ENST00000543552.5:ENST00000545432.5:ENST00000354497.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	135	2	2.8868	2.95527	3.02374	0.00133935	1.64938e-4	0.0335551	0.0110906
chr1	233615026	233615125	338542	0	+	0.545455	(0.515,0.57]	chr1	39406	1	INTRON	INTRON	KCNK1	ENSG00000135750.15	ENST00000366621.8	protein_coding	protein_coding	protein_coding	protein_coding	6	98	2	2.51725	2.9552050000000003	3.39316	8.36453e-4	1.20237e-4	0.0263691	0.00992311
chr3	19965748	19965848	1376222	0	+	0.61	(0.57,1]	chr3	145051	125	INTRON	INTRON	RAB5A	ENSG00000144566.11	ENST00000273047.9:ENST00000412966.5:ENST00000446547.5:ENST00000422242.1:ENST00000469122.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	51	2	1.99245	2.95519	3.91793	0.00568465	5.86096e-5	0.0678837	0.00668534
chr3	47181791	47181891	1418257	0	+	0.47	(0.44,0.476]	chr3	148980	44	INTRON	INTRON	KIF9-AS1	ENSG00000227398.5	ENST00000429315.3	lncRNA	lncRNA	lncRNA	lncRNA	4	76	2	2.12992	2.95519	3.78046	0.010975	3.54249e-4	0.092635	0.0174886
chr3	138807845	138807945	1831231	0	-	0.46	(0.44,0.476]	chr3	184062	109	INTRON	INTRON	PIK3CB	ENSG00000051382.9	ENST00000674063.1:ENST00000477593.5:ENST00000462898.5:ENST00000483968.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	76	2	2.12992	2.95519	3.78046	0.010975	3.54249e-4	0.092635	0.0174886
chr8	37879513	37879613	3935745	0	-	0.43	(0.408,0.44]	chr8	360576	15	INTRON	INTRON	RAB11FIP1	ENSG00000156675.16	ENST00000330843.9:ENST00000287263.8:ENST00000522727.5	protein_coding	protein_coding	protein_coding	protein_coding	4	75	2	2.53861	2.955115	3.37162	0.00208674	0.00202413	0.0416117	0.0411801
chr8	47899693	47899782	3945126	0	-	0.595506	(0.57,1]	chr8	361835	8	INTRON	INTRON	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7	protein_coding	protein_coding	protein_coding	protein_coding	3	35	2	2.28103	2.9550650000000003	3.6291	0.0151554	3.02868e-4	0.108535	0.0160895
chr6	135457193	135457293	3227754	0	-	0.53	(0.515,0.57]	chr6	300078	3	SS5_PROX	SS5_PROX:INTRON	AHI1	ENSG00000135541.22	ENST00000681022.1:ENST00000681841.1:ENST00000680965.1:ENST00000681522.1:ENST00000681365.1:ENST00000681332.1:ENST00000680826.1:ENST00000367800.8:ENST00000265602.11:ENST00000681718.1:ENST00000679672.1:ENST00000681828.1:ENST00000679668.1:ENST00000680840.1:ENST00000457866.6:ENST00000679925.1:ENST00000680561.1:ENST00000679742.1:ENST00000681860.1:ENST00000680119.1:ENST00000681340.1:ENST00000679589.1:ENST00000679434.1:ENST00000679943.1:ENST00000681301.1:ENST00000681488.1:ENST00000679450.1:ENST00000681756.1:ENST00000681670.1:ENST00000679622.1:ENST00000367799.7:ENST00000680656.1:ENST00000680278.1:ENST00000680184.1:ENST00000531788.5:ENST00000681945.1:ENST00000327035.10:ENST00000681477.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	54	2	2.32967	2.95501	3.58035	0.0133671	5.21239e-4	0.0946278	0.0204523
chr11	85979288	85979384	5013918	0	-	0.458333	(0.44,0.476]	chr11	472923	7	INTRON	INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000530692.5:ENST00000630913.2:ENST00000529760.5:ENST00000528398.5:ENST00000532603.5:ENST00000356360.9:ENST00000529016.5:ENST00000526961.5:ENST00000530542.1	protein_coding	protein_coding	protein_coding	protein_coding	9	176	2	2.83755	2.954685	3.07182	1.23916e-4	4.09275e-5	0.010016	0.00519615
chr8	29056904	29057002	3726542	0	+	0.612245	(0.57,1]	chr8	346338	11	EXON_LNCRNA	EXON_LNCRNA:INTRON	HMBOX1:ENSG00000259366	ENSG00000147421.18:ENSG00000259366.2	ENST00000522468.1:ENST00000687917.1:ENST00000687452.1	protein_coding	nonsense_mediated_decay	protein_coding:lncRNA	nonsense_mediated_decay:lncRNA	7	68	2	2.1589	2.95465	3.7504	0.00252118	5.81468e-6	0.0465056	0.00179882
chr15	63537656	63537755	6042243	0	+	0.444444	(0.44,0.476]	chr15	575394	1	INTRON	INTRON	USP3	ENSG00000140455.17	ENST00000540797.5:ENST00000380324.8:ENST00000561442.5:ENST00000560070.5:ENST00000557884.5:ENST00000558157.5:ENST00000561326.5:ENST00000559873.5:ENST00000559192.5:ENST00000559771.5:ENST00000268049.11:ENST00000558285.5:ENST00000559257.5:ENST00000538686.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	62	2	2.78129	2.95464	3.12799	0.0050635	0.00229634	0.0621733	0.0439319
chr18	9123379	9123479	6868806	0	+	0.23	[0,0.28]	chr18	680531	3	INTRON	INTRON	NDUFV2	ENSG00000178127.13	ENST00000318388.11:ENST00000400033.1:ENST00000465096.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	90	2	2.93306	2.9546099999999997	2.97616	0.0128425	0.00180892	0.0926667	0.039365700000000003
chr5	57243068	57243168	2358755	0	+	0.52	(0.515,0.57]	chr5	227598	55	INTRON	INTRON	GPBP1	ENSG00000062194.16	ENST00000424459.7:ENST00000514387.6:ENST00000506184.7:ENST00000511209.5:ENST00000264779.6:ENST00000513524.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	15	217	2	2.42465	2.954575	3.4845	5.68732e-5	3.0273e-6	0.0061679	0.00122849
chr1	202764634	202764732	620300	0	-	0.397959	(0.378,0.408]	chr1	73634	6	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	KDM5B	ENSG00000117139.18	ENST00000367265.9:ENST00000648338.1:ENST00000649542.1:ENST00000647757.1:ENST00000367264.7:ENST00000648473.1:ENST00000650569.1:ENST00000648056.1:ENST00000649770.1:ENST00000648469.1:ENST00000650417.1:ENST00000235790.9:ENST00000650422.1:ENST00000648738.1:ENST00000648744.1:ENST00000648958.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	88	2	2.51733	2.954545	3.39176	0.00808319	1.17224e-4	0.0766625	0.00929802
chr11	34059860	34059960	4767732	0	+	0.43	(0.408,0.44]	chr11	440953	29	INTRON	INTRON	CAPRIN1	ENSG00000135387.21	ENST00000341394.9:ENST00000528856.5:ENST00000389645.7:ENST00000534042.5:ENST00000534825.5:ENST00000532820.5:ENST00000530820.5:ENST00000529307.1:ENST00000526494.5:ENST00000532755.5:ENST00000533641.5:ENST00000530008.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	90	2	2.31338	2.95451	3.59564	0.00322111	5.73354e-4	0.0507087	0.0217398
chr6	34891597	34891697	2849295	0	+	0.45	(0.44,0.476]	chr6	269222	16	INTRON	INTRON	ANKS1A	ENSG00000064999.15	ENST00000360359.5:ENST00000649117.1:ENST00000650178.1	protein_coding	protein_coding	protein_coding	protein_coding	3	62	2	2.59888	2.9544949999999996	3.31011	0.00487719	0.00259023	0.0640618	0.0452934
chr10	68362090	68362190	4638690	0	-	0.44	(0.408,0.44]	chr10	426535	63	INTRON	INTRON	RUFY2	ENSG00000204130.14	ENST00000466493.5:ENST00000484083.5:ENST00000463210.6:ENST00000602465.6:ENST00000388768.6:ENST00000265865.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	84	2	2.68622	2.9543999999999997	3.2225799999999998	0.00418848	2.79412e-4	0.0572071	0.0148832
chr17	81591476	81591574	6849136	0	-	0.326531	(0.32,0.35]	chr17	678168	20	INTRON	INTRON	NPLOC4	ENSG00000182446.14	ENST00000331134.11:ENST00000374747.9:ENST00000574897.5:ENST00000572351.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	72	2	2.78706	2.9542599999999997	3.12146	0.00630799	0.00253645	0.0687526	0.0465056
chr19	47170123	47170223	7084276	0	+	0.34	(0.32,0.35]	chr19	708797	2	SS5_PROX	SS5_PROX:INTRON	SAE1	ENSG00000142230.13	ENST00000413379.7:ENST00000270225.12:ENST00000598840.5:ENST00000414294.6:ENST00000660039.1:ENST00000664120.1:ENST00000596995.1:ENST00000392776.3:ENST00000659110.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	72	2	2.78706	2.9542599999999997	3.12146	0.00630799	0.00253645	0.0687526	0.0465056
chr21	10441348	10441448	7368408	0	+	0.35	(0.32,0.35]	chr21	751975	261	INTRON	INTRON	BAGE2	ENSG00000187172.15	ENST00000474011.5:ENST00000470054.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	5	117	2	2.94814	2.954215	2.96029	0.00182605	3.05651e-4	0.0386492	0.0156022
chr1	225780406	225780505	327268	0	+	0.494949	(0.476,0.515]	chr1	37651	20	INTRON	INTRON	SRP9	ENSG00000143742.14	ENST00000626563.2:ENST00000619790.4:ENST00000304786.12:ENST00000650651.1:ENST00000366839.8:ENST00000651465.1:ENST00000651761.1:ENST00000651653.1:ENST00000366838.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	115	2	2.4029	2.9541	3.5053	0.0016811	9.14136e-5	0.0381232	0.00850096
chr2	190913764	190913864	959817	0	+	0.38	(0.378,0.408]	chr2	104197	4	SS5_PROX	SS5_PROX:INTRON	GLS	ENSG00000115419.13	ENST00000320717.8:ENST00000338435.8:ENST00000417154.5:ENST00000461965.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	87	2	2.92509	2.95402	2.98295	0.00167715	9.47389e-4	0.0370386	0.0282007
chr13	21391787	21391854	5556806	0	-	0.358209	(0.35,0.378]	chr13	531131	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ZDHHC20	ENSG00000180776.16	ENST00000400590.8:ENST00000542645.5:ENST00000382466.7:ENST00000320220.13:ENST00000494731.5:ENST00000415724.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	37	2	1.71046	2.95378	4.1971	0.0441269	0.0367539	0.162255	0.138959
chr5	66156170	66156268	2372609	0	+	0.336735	(0.32,0.35]	chr5	228659	2	UTR3	UTR3:EXON_MRNA:INTRON	SREK1	ENSG00000153914.16	ENST00000521691.5:ENST00000612404.4:ENST00000334121.11:ENST00000520953.5:ENST00000522912.5:ENST00000524111.5:ENST00000380918.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	73	2	2.9451	2.95371	2.96232	0.011051	0.00118924	0.0873897	0.031662
chr7	141746431	141746526	3440183	0	+	0.494737	(0.476,0.515]	chr7	320694	10	EXON_MRNA	EXON_MRNA:INTRON	SSBP1	ENSG00000106028.11	ENST00000612337.4:ENST00000265304.11:ENST00000498107.5:ENST00000489378.5:ENST00000469123.5:ENST00000467681.5:ENST00000465582.5:ENST00000465167.1:ENST00000484178.5:ENST00000481508.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	63	2	2.66112	2.95371	3.2463	0.0044598	0.00262374	0.0592169	0.0470772
chr1	65324126	65324226	136236	0	+	0.33	(0.32,0.35]	chr1	15352	138	INTRON	INTRON	DNAJC6	ENSG00000116675.16	ENST00000463018.5:ENST00000494710.6:ENST00000263441.11:ENST00000395325.7:ENST00000483402.1:ENST00000371069.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	118	2	2.67466	2.953545	3.23243	0.00182361	3.30385e-4	0.0386141	0.0161444
chr1	6617258	6617358	5452	0	+	0.53	(0.515,0.57]	chr1	1067	4	SS5_PROX	SS5_PROX:INTRON	PHF13	ENSG00000116273.6	ENST00000377648.5:ENST00000495385.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	36	2	1.8661	2.9534800000000003	4.04086	0.0274846	0.0197045	0.123904	0.120063
chr6	15273847	15273947	2823224	0	+	0.3	(0.28,0.32]	chr6	265190	245	INTRON	INTRON	JARID2	ENSG00000008083.14	ENST00000341776.7:ENST00000397311.4	protein_coding	protein_coding	protein_coding	protein_coding	2	58	2	2.78004	2.95342	3.1268	0.0193244	0.00508956	0.108861	0.0646039
chr1	28903494	28903593	58844	0	+	0.484848	(0.476,0.515]	chr1	7617	93	INTRON	INTRON	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000647918.1:ENST00000646800.1:ENST00000644342.1:ENST00000646189.1:ENST00000482464.6:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000646260.1:ENST00000373798.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	83	2	2.93859	2.953415	2.96824	0.00143107	9.98194e-4	0.0340925	0.0290732
chr15	44520128	44520226	6015293	0	+	0.418367	(0.408,0.44]	chr15	572993	6	EXON_MRNA	EXON_MRNA:INTRON	CTDSPL2	ENSG00000137770.14	ENST00000260327.9:ENST00000558966.5:ENST00000558373.5:ENST00000560620.1:ENST00000559738.1:ENST00000559175.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	102	2	2.79124	2.953385	3.11553	0.00276922	1.01454e-4	0.0469265	0.00850967
chr9	131130836	131130936	4215674	0	+	0.32	(0.28,0.32]	chr9	386524	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	NUP214	ENSG00000126883.19	ENST00000695497.1:ENST00000695498.1:ENST00000695496.1:ENST00000695495.1:ENST00000695494.1:ENST00000695493.1:ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000525561.2:ENST00000651022.1:ENST00000651639.1:ENST00000695499.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	122	2	1.81786	2.953385	4.08891	0.0142986	1.67688e-4	0.104025	0.0118991
chr1	203802721	203802819	296751	0	+	0.326531	(0.32,0.35]	chr1	34131	24	UTR3	UTR3:UTR5:EXON_MRNA:SS3_PROX:INTRON	ZC3H11A:ZBED6	ENSG00000058673.17:ENSG00000257315.3	ENST00000367210.3:ENST00000453771.5:ENST00000432282.5:ENST00000638800.1:ENST00000367214.5:ENST00000639812.1:ENST00000367212.7:ENST00000332127.8:ENST00000550078.2:ENST00000495527.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	27	598	2	2.75975	2.95337	3.14699	3.36226e-5	3.34781e-7	0.00488303	2.93494e-4
chr16	24774035	24774135	6329659	0	+	0.34	(0.32,0.35]	chr16	605945	153	INTRON	INTRON	TNRC6A	ENSG00000090905.19	ENST00000395799.8:ENST00000315183.11:ENST00000562829.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	44	2	1.45026	2.953275	4.45629	0.0622478	0.0246089	0.194723	0.12011
chr6	154767893	154767993	3002162	0	+	0.35	(0.32,0.35]	chr6	280737	255	INTRON	INTRON	SCAF8	ENSG00000213079.10	ENST00000367186.7:ENST00000417268.3:ENST00000461219.5:ENST00000367178.8:ENST00000464628.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	44	2	1.45026	2.953275	4.45629	0.0622478	0.0246089	0.194723	0.12011
chr9	34195172	34195272	4111431	0	+	0.3	(0.28,0.32]	chr9	374720	34	INTRON	INTRON	UBAP1	ENSG00000165006.14	ENST00000625521.2:ENST00000379186.8:ENST00000297661.9:ENST00000626262.2	protein_coding	protein_coding	protein_coding	protein_coding	3	41	2	1.6633	2.9532499999999997	4.2432	0.0522231	0.0479043	0.177274	0.153019
chr1	23020447	23020546	43767	0	+	0.373737	(0.35,0.378]	chr1	5252	1	INTRON	INTRON	KDM1A	ENSG00000004487.18	ENST00000692214.1:ENST00000686934.1:ENST00000689853.1:ENST00000465864.2:ENST00000691256.1:ENST00000688122.1:ENST00000692056.1:ENST00000692853.1:ENST00000689366.1:ENST00000686270.1:ENST00000685102.1:ENST00000690627.1:ENST00000686771.1:ENST00000692209.1:ENST00000686339.1:ENST00000691813.1:ENST00000693156.1:ENST00000688235.1:ENST00000692975.1:ENST00000687202.1:ENST00000691682.1:ENST00000691404.1:ENST00000691694.1:ENST00000688680.1:ENST00000356634.7:ENST00000400181.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	168	2	2.28768	2.953195	3.61871	0.00240273	5.34733e-6	0.0440913	0.00160016
chr17	45154481	45154580	6782249	0	-	0.535354	(0.515,0.57]	chr17	669028	32	INTRON	INTRON	HEXIM2-AS1	ENSG00000224505.3	ENST00000589950.1:ENST00000452741.2	lncRNA	lncRNA	lncRNA	lncRNA	3	54	2	2.45585	2.952995	3.45014	0.00797827	0.00116948	0.0798772	0.0312127
chr20	31692877	31692977	7325072	0	-	0.52	(0.515,0.57]	chr20	745996	79	INTRON	INTRON	BCL2L1	ENSG00000171552.14	ENST00000376055.9:ENST00000376062.6:ENST00000307677.5:ENST00000420488.6:ENST00000439267.2:ENST00000678563.1:ENST00000456404.6:ENST00000676942.1:ENST00000676582.1:ENST00000434194.2:ENST00000677194.1:ENST00000678671.1:ENST00000677494.1:ENST00000422920.2:ENST00000450273.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	54	2	2.45585	2.952995	3.45014	0.00797827	0.00116948	0.0798772	0.0312127
chr14	19065093	19065193	5655047	0	+	0.32	(0.28,0.32]	chr14	538990	4	SS5_PROX	SS5_PROX:INTRON	DUXAP9	ENSG00000225210.10	ENST00000549484.5:ENST00000547220.5:ENST00000610585.4:ENST00000621361.4:ENST00000620237.1:ENST00000619938.1:ENST00000644980.1:ENST00000619210.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	2	59	2	2.86113	2.95299	3.04485	0.0122675	0.00894006	0.0969406	0.0799922
chr6	167887314	167887414	3034947	0	+	0.32	(0.28,0.32]	chr6	282743	64	INTRON	INTRON	AFDN	ENSG00000130396.21	ENST00000683244.1:ENST00000351017.9:ENST00000344191.8:ENST00000392112.5:ENST00000392108.7:ENST00000400822.7:ENST00000447894.6:ENST00000366809.6:ENST00000366806.6:ENST00000423229.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	42	2	1.76378	2.95296	4.14214	0.0579756	0.0395495	0.167723	0.161534
chr21	39254155	39254254	7464931	0	-	0.585859	(0.57,1]	chr21	760483	29	INTRON	INTRON	BRWD1	ENSG00000185658.14	ENST00000333229.6:ENST00000342449.8:ENST00000446924.5:ENST00000380800.7:ENST00000430093.5:ENST00000445245.5:ENST00000445668.5:ENST00000412604.1:ENST00000455867.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	44	2	2.89463	2.9529199999999998	3.01121	0.00788262	1.18338e-4	0.076155	0.00930884
chr15	30666596	30666695	5992687	0	+	0.40404	(0.378,0.408]	chr15	569767	74	INTRON	INTRON	ENSG00000284906:ENSG00000285035:ENSG00000187951	ENSG00000284906.3:ENSG00000285035.2:ENSG00000187951.11	ENST00000685924.1:ENST00000563110.6:ENST00000566548.5:ENST00000602616.6:ENST00000562954.1	protein_coding	protein_coding	protein_coding:lncRNA:transcribed_unprocessed_pseudogene	protein_coding:nonsense_mediated_decay:lncRNA:processed_transcript	4	78	2	2.66822	2.95265	3.23708	0.00365053	0.00112898	0.0535094	0.0308465
chr6	17980665	17980765	3068484	0	-	0.31	(0.28,0.32]	chr6	285105	289	INTRON	INTRON	KIF13A	ENSG00000137177.20	ENST00000378814.9:ENST00000259711.11:ENST00000378826.6:ENST00000378843.6:ENST00000636847.1:ENST00000507576.1:ENST00000505588.1:ENST00000502704.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	58	2	2.73077	2.95265	3.17453	0.0220748	0.00429297	0.115395	0.0599065
chr11	95770787	95770883	5019406	0	-	0.239583	[0,0.28]	chr11	473572	20	UTR3	UTR3:EXON_MRNA:INTRON	FAM76B	ENSG00000077458.13	ENST00000358780.10:ENST00000398187.6:ENST00000543641.5:ENST00000536839.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	66	2	2.64309	2.952595	3.2621000000000002	0.0308646	0.00367113	0.13151	0.056059199999999997
chr8	60241563	60241663	3956502	0	-	0.28	[0,0.28]	chr8	362980	88	INTRON	INTRON	CA8	ENSG00000178538.10	ENST00000317995.5:ENST00000524872.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	90	2	2.45904	2.952575	3.44611	0.0137145	0.00185186	0.0949306	0.039946
chr1	17424472	17424566	384832	0	-	0.404255	(0.378,0.408]	chr1	45481	13	INTRON	INTRON	RCC2	ENSG00000179051.14	ENST00000375436.9:ENST00000375433.3	protein_coding	protein_coding	protein_coding	protein_coding	9	173	2	2.61184	2.95256	3.29328	1.60611e-4	7.07533e-5	0.0109124	0.0075348
chr1	46304320	46304419	96542	0	+	0.313131	(0.28,0.32]	chr1	12964	1	INTRON	INTRON	UQCRH	ENSG00000173660.12	ENST00000311672.10:ENST00000489056.5:ENST00000486951.1:ENST00000496387.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	110	2	2.06523	2.95248	3.83973	0.0112084	2.68965e-4	0.0880475	0.0145349
chr1	193064973	193065072	284315	0	+	0.232323	[0,0.28]	chr1	32673	44	INTRON	INTRON	RO60	ENSG00000116747.13	ENST00000432079.5:ENST00000400968.7:ENST00000415442.2:ENST00000460715.2:ENST00000506303.1:ENST00000367446.7:ENST00000367443.5:ENST00000367444.7:ENST00000367445.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	66	2	2.89982	2.9524	3.00498	0.0158893	0.00876063	0.101453	0.0846118
chr7	22947247	22947347	3501351	0	-	0.28	[0,0.28]	chr7	326737	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	FAM126A	ENSG00000122591.13	ENST00000465661.2:ENST00000432176.7:ENST00000440481.6:ENST00000679826.1:ENST00000681402.1:ENST00000681237.1:ENST00000680721.1:ENST00000679789.1:ENST00000409923.5:ENST00000681766.1:ENST00000681079.1:ENST00000498833.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	66	2	2.89982	2.9524	3.00498	0.0158893	0.00876063	0.101453	0.0846118
chr14	93319022	93319122	5963798	0	-	0.5	(0.476,0.515]	chr14	566292	225	INTRON	INTRON	BTBD7	ENSG00000011114.15	ENST00000334746.10:ENST00000554565.5:ENST00000298896.7:ENST00000554968.1	protein_coding	protein_coding	protein_coding	protein_coding	2	49	2	2.3223	2.952365	3.58243	0.0519312	6.18479e-4	0.159306	0.0223951
chr20	62141244	62141344	7360977	0	-	0.58	(0.57,1]	chr20	750752	3	SS3_PROX	SS3_PROX:INTRON	PSMA7	ENSG00000101182.15	ENST00000370873.9:ENST00000484488.5:ENST00000370861.1:ENST00000370858.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	46	2	2.0955	2.952365	3.80923	0.00622614	1.11529e-4	0.0718276	0.00945289
chrX	20135437	20135537	7772142	0	-	0.36	(0.35,0.378]	chrX	794430	3	SS5_PROX	SS5_PROX:INTRON	EIF1AX	ENSG00000173674.11	ENST00000379607.10:ENST00000379593.1	protein_coding	protein_coding	protein_coding	protein_coding	2	54	2	2.57049	2.95226	3.33403	0.0262669	0.00272701	0.133676	0.0467523
chr12	49645021	49645120	5321416	0	-	0.494949	(0.476,0.515]	chr12	507149	87	UTR3	UTR3:EXON_MRNA	FMNL3	ENSG00000161791.14	ENST00000335154.10:ENST00000550488.5:ENST00000352151.9:ENST00000549137.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	75	2	2.16306	2.9522500000000003	3.74144	0.00973468	4.08784e-4	0.0877284	0.0185763
chr6	24718959	24719056	3070726	0	-	0.360825	(0.35,0.378]	chr6	285369	4	UTR5	UTR5:EXON_MRNA:INTRON	C6orf62	ENSG00000112308.13	ENST00000378119.9:ENST00000378102.3	protein_coding	protein_coding	protein_coding	protein_coding	14	244	2	2.20103	2.952135	3.70324	3.72482e-4	8.14457e-6	0.0173854	0.00216603
chr15	68097582	68097682	6056389	0	+	0.5	(0.476,0.515]	chr15	576567	93	INTRON	INTRON	PIAS1	ENSG00000033800.14	ENST00000564915.5:ENST00000249636.11:ENST00000562190.1:ENST00000545237.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	165	2	2.63548	2.952015	3.26855	1.351e-4	6.60703e-5	0.0100397	0.0071649
chr10	35372849	35372949	4424866	0	+	0.49	(0.476,0.515]	chr10	407899	353	INTRON	INTRON	CCNY	ENSG00000108100.18	ENST00000374706.5:ENST00000490012.6:ENST00000493157.6:ENST00000374704.8:ENST00000265375.13:ENST00000339497.7:ENST00000492478.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	62	2	2.45598	2.95191	3.44784	0.00945755	0.00113238	0.0817766	0.0308465
chr7	149611103	149611203	3672487	0	-	0.61	(0.57,1]	chr7	340834	471	INTRON	INTRON	ZNF767P	ENSG00000133624.14	ENST00000463567.5:ENST00000472212.5:ENST00000684939.1:ENST00000690388.1:ENST00000486492.5:ENST00000481762.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	3	34	2	2.81057	2.95185	3.09313	0.00369015	0.00169295	0.0535094	0.0381936
chr8	51898331	51898429	3946590	0	-	0.602041	(0.57,1]	chr8	362046	21	INTRON	INTRON	PCMTD1	ENSG00000168300.14	ENST00000544451.2:ENST00000360540.9:ENST00000522514.6:ENST00000519559.1:ENST00000521344.1:ENST00000521046.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	34	2	2.81057	2.95185	3.09313	0.00369015	0.00169295	0.0535094	0.0381936
chr3	48694240	48694314	1689464	0	-	0.527027	(0.515,0.57]	chr3	172837	1	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	IP6K2	ENSG00000068745.15	ENST00000328631.10:ENST00000479914.5:ENST00000449563.5:ENST00000413654.5:ENST00000443853.5:ENST00000437427.5:ENST00000412850.5:ENST00000454335.5:ENST00000340879.8:ENST00000432678.6:ENST00000433104.2:ENST00000416707.1:ENST00000431721.6:ENST00000449610.5:ENST00000413298.5:ENST00000450045.5:ENST00000446860.5:ENST00000455545.5:ENST00000412795.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	56	2	2.01737	2.951765	3.88616	0.0352218	1.07993e-4	0.137535	0.00878438
chr16	7973730	7973830	6440245	0	-	0.37	(0.35,0.378]	chr16	620339	790	INTRON	INTRON	ENSG00000260289	ENSG00000260289.2	ENST00000670665.1:ENST00000654046.1:ENST00000567103.2	lncRNA	lncRNA	lncRNA	lncRNA	3	71	2	2.23043	2.951745	3.67306	0.0187487	7.05001e-4	0.117523	0.024224
chr12	132821395	132821495	5450146	0	-	0.44	(0.408,0.44]	chr12	522103	42	INTRON	INTRON	GOLGA3	ENSG00000090615.16	ENST00000204726.9:ENST00000450791.8:ENST00000688114.1:ENST00000691696.1:ENST00000691636.1:ENST00000690897.1:ENST00000456883.7:ENST00000545875.4:ENST00000688251.1:ENST00000692951.1:ENST00000686751.1:ENST00000685580.1:ENST00000687165.1:ENST00000692384.1:ENST00000685120.1:ENST00000689813.1:ENST00000693112.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	122	2	2.56776	2.95169	3.33562	0.00227507	2.6898e-5	0.0426265	0.00408175
chr16	88949118	88949217	6541018	0	-	0.373737	(0.35,0.378]	chr16	634104	74	INTRON	INTRON	CBFA2T3	ENSG00000129993.15	ENST00000268679.9:ENST00000563640.1:ENST00000570046.1	protein_coding	protein_coding	protein_coding	protein_coding	3	71	2	2.79472	2.951675	3.10863	0.00470896	0.00303911	0.0631419	0.0493883
chr11	3757395	3757495	4894761	0	-	0.54	(0.515,0.57]	chr11	458876	36	INTRON	INTRON	NUP98	ENSG00000110713.17	ENST00000359171.8:ENST00000324932.12:ENST00000650171.1:ENST00000355260.7:ENST00000397004.8:ENST00000397007.8:ENST00000527104.5:ENST00000529379.1:ENST00000397013.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	108	2	1.7754	2.95162	4.12784	0.00442988	4.0232e-5	0.061054	0.00539487
chr18	9117137	9117237	6868738	0	+	0.54	(0.515,0.57]	chr18	680510	118	INTRON	INTRON	NDUFV2	ENSG00000178127.13	ENST00000577703.1:ENST00000318388.11:ENST00000583375.5:ENST00000400033.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	143	2	2.82828	2.95158	3.07488	1.38584e-4	2.95045e-5	0.0107072	0.00431591
chr11	661490	661590	4889138	0	-	0.52	(0.515,0.57]	chr11	457709	13	INTRON	INTRON	DEAF1	ENSG00000177030.19	ENST00000382409.4:ENST00000527170.5:ENST00000685854.1:ENST00000683307.1:ENST00000528864.6:ENST00000525626.6:ENST00000682936.1:ENST00000690068.1:ENST00000692634.1:ENST00000687329.1:ENST00000686001.1:ENST00000689835.1:ENST00000525904.5:ENST00000530813.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	110	2	2.21892	2.95155	3.68418	0.00198472	2.23598e-5	0.0411469	0.00386054
chr7	64918891	64918991	3321247	0	+	0.34	(0.32,0.35]	chr7	308796	2	INTRON	INTRON	ZNF273	ENSG00000198039.12	ENST00000527278.5:ENST00000489672.5:ENST00000476120.2:ENST00000395375.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	72	2	2.58753	2.95143	3.31533	0.00560122	0.00323121	0.0678837	0.0507087
chr13	110912463	110912560	5650626	0	-	0.381443	(0.378,0.408]	chr13	538399	3	INTRON	INTRON	ANKRD10	ENSG00000088448.14	ENST00000267339.6:ENST00000310847.8:ENST00000465753.1:ENST00000494859.5:ENST00000460846.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	12	144	2	1.68165	2.95142	4.22119	0.0054901	4.64213e-5	0.0672178	0.00590859
chr19	58298020	58298119	7107219	0	+	0.484848	(0.476,0.515]	chr19	713389	26	UTR3	UTR3:EXON_MRNA:INTRON	ZNF8:ZNF8-ERVK3-1	ENSG00000278129.2:ENSG00000267216.1	ENST00000621650.2:ENST00000591325.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	2	49	2	2.56868	2.9514199999999997	3.33416	0.0256676	0.00230489	0.133676	0.0428247
chr17	2644107	2644207	6547947	0	+	0.45	(0.44,0.476]	chr17	635238	18	INTRON	INTRON	PAFAH1B1	ENSG00000007168.14	ENST00000576586.5:ENST00000397195.10:ENST00000676201.1:ENST00000575477.5:ENST00000675621.1:ENST00000676353.1:ENST00000674717.1:ENST00000675202.1:ENST00000675764.1:ENST00000674608.1:ENST00000676077.1:ENST00000676098.1:ENST00000572915.6:ENST00000570400.1:ENST00000675430.1:ENST00000675331.1:ENST00000676188.1:ENST00000574816.5:ENST00000675390.1:ENST00000676456.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	75	2	2.14666	2.95137	3.75608	0.0116436	2.6487e-4	0.0889659	0.0144071
chr1	108928903	108929002	518805	0	-	0.464646	(0.44,0.476]	chr1	60851	31	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	CLCC1	ENSG00000121940.17	ENST00000690509.1:ENST00000687328.1:ENST00000685014.1:ENST00000685540.1:ENST00000686576.1:ENST00000688070.1:ENST00000691513.1:ENST00000686821.1:ENST00000692511.1:ENST00000689479.1:ENST00000687646.1:ENST00000687998.1:ENST00000687226.1:ENST00000693336.1:ENST00000689991.1:ENST00000687591.1:ENST00000691777.1:ENST00000690756.1:ENST00000688778.1:ENST00000685104.1:ENST00000689103.1:ENST00000687734.1:ENST00000686434.1:ENST00000685497.1:ENST00000691342.1:ENST00000686776.1:ENST00000692342.1:ENST00000689351.1:ENST00000692584.1:ENST00000692775.1:ENST00000687134.1:ENST00000690707.1:ENST00000687675.1:ENST00000688298.1:ENST00000675018.1:ENST00000690781.1:ENST00000691556.1:ENST00000689189.1:ENST00000687099.1:ENST00000685791.1:ENST00000687865.1:ENST00000687449.1:ENST00000688285.1:ENST00000686817.1:ENST00000369968.7:ENST00000674992.1:ENST00000675001.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	176	2	2.73339	2.951365	3.16934	1.37991e-4	4.05843e-5	0.0101125	0.00539487
chr7	158866972	158867072	3456233	0	+	0.29	(0.28,0.32]	chr7	323132	99	INTRON	INTRON	DYNC2I1	ENSG00000126870.16	ENST00000407559.8	protein_coding	protein_coding	protein_coding	protein_coding	3	78	2	2.77917	2.951245	3.12332	0.00698537	0.00285651	0.0718189	0.0494641
chr3	47691574	47691671	1684161	0	-	0.391753	(0.378,0.408]	chr3	172052	18	INTRON	INTRON	SMARCC1	ENSG00000173473.11	ENST00000254480.10:ENST00000425518.5:ENST00000462198.5:ENST00000485737.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	162	2	2.71038	2.951225	3.19207	2.84674e-4	6.80984e-5	0.015495	0.00684369
chr8	143313853	143313951	4081499	0	-	0.377551	(0.35,0.378]	chr8	370722	33	INTRON	INTRON	TOP1MT	ENSG00000184428.13	ENST00000519977.5:ENST00000329245.9:ENST00000521193.5:ENST00000519148.5:ENST00000523676.5	protein_coding	protein_coding	protein_coding	protein_coding	10	208	2	2.82046	2.95121	3.08196	9.15914e-5	5.02168e-5	0.00850875	0.00581045
chr7	1569603	1569692	3462722	0	-	0.539326	(0.515,0.57]	chr7	323952	4	UTR5	UTR5:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PSMG3	ENSG00000157778.9	ENST00000288607.3:ENST00000404674.7:ENST00000252329.3	protein_coding	protein_coding	protein_coding	protein_coding	11	179	2	2.77561	2.9512	3.12679	3.60423e-5	2.1804e-5	0.00508987	0.00363815
chr17	28195605	28195702	6584061	0	+	0.340206	(0.32,0.35]	chr17	639900	11	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	NLK	ENSG00000087095.13	ENST00000407008.8:ENST00000496808.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	55	2	2.78073	2.951095	3.12146	0.01481	0.00630799	0.106702	0.0687526
chr16	21516928	21517028	6461526	0	-	0.4	(0.378,0.408]	chr16	623383	104	INTRON	INTRON	SMG1P3	ENSG00000180747.15	ENST00000522841.6:ENST00000437413.2:ENST00000435197.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	16	297	2	2.06479	2.950995	3.8372	0.00122212	6.56949e-8	0.0320622	1.1048e-4
chr1	93097567	93097667	162722	0	+	0.47	(0.44,0.476]	chr1	17567	162	INTRON	INTRON	MTF2	ENSG00000143033.18	ENST00000540243.5:ENST00000545708.5:ENST00000474314.6:ENST00000370298.9:ENST00000473430.5:ENST00000494963.5:ENST00000471953.5:ENST00000370303.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	83	2	2.74546	2.950925	3.15639	0.00326603	3.93757e-4	0.0508595	0.0178567
chr1	202157438	202157538	619700	0	-	0.49	(0.476,0.515]	chr1	73473	3	SS5_PROX	SS5_PROX:INTRON	PTPN7	ENSG00000143851.16	ENST00000309017.8:ENST00000367279.8:ENST00000495688.5:ENST00000691036.1:ENST00000462815.5:ENST00000496197.5:ENST00000480836.5:ENST00000477554.6:ENST00000492977.5:ENST00000477625.5:ENST00000629151.2:ENST00000479092.5:ENST00000476061.5:ENST00000464870.5:ENST00000467283.5:ENST00000435759.6:ENST00000486116.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	32	2	1.92984	2.950925	3.97201	0.0466474	0.030904	0.151522	0.143385
chr19	19394810	19394910	7035236	0	+	0.48	(0.476,0.515]	chr19	701429	83	INTRON	INTRON	GATAD2A	ENSG00000167491.18	ENST00000494516.6:ENST00000360315.7:ENST00000609040.5:ENST00000417582.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	32	2	1.92984	2.950925	3.97201	0.0466474	0.030904	0.151522	0.143385
chr21	28977128	28977228	7436535	0	-	0.51	(0.476,0.515]	chr21	758418	53	INTRON	INTRON	LTN1	ENSG00000198862.14	ENST00000614971.4:ENST00000389194.7:ENST00000361371.10:ENST00000389195.7:ENST00000483326.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	32	2	1.92984	2.950925	3.97201	0.0466474	0.030904	0.151522	0.143385
chr22	16786803	16786903	7546267	0	-	0.4	(0.378,0.408]	chr22	771315	20	INTRON	INTRON	XKR3	ENSG00000172967.8	ENST00000331428.5:ENST00000684488.1	protein_coding	protein_coding	protein_coding	protein_coding	6	100	2	1.90014	2.95092	4.0017	0.0110079	7.73853e-5	0.0873897	0.00735438
chr1	10041281	10041381	19209	0	+	0.37	(0.35,0.378]	chr1	1838	72	INTRON	INTRON	UBE4B	ENSG00000130939.20	ENST00000672724.1:ENST00000253251.12:ENST00000343090.11:ENST00000377153.5	protein_coding	protein_coding	protein_coding	protein_coding	4	93	2	2.80179	2.950685	3.09958	0.00223906	8.54875e-4	0.0435144	0.0267428
chr3	185785077	185785177	1885949	0	-	0.48	(0.476,0.515]	chr3	188573	864	INTRON	INTRON	IGF2BP2	ENSG00000073792.16	ENST00000382199.7:ENST00000346192.7:ENST00000457616.6:ENST00000421047.3:ENST00000461957.5:ENST00000493302.5:ENST00000466476.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	95	2	1.81741	2.95066	4.08391	0.0141271	4.74551e-5	0.0959618	0.00562068
chr17	27308061	27308159	6580680	0	+	0.285714	(0.28,0.32]	chr17	639629	4	UTR3	UTR3:EXON_MRNA:INTRON	WSB1	ENSG00000109046.15	ENST00000467843.6:ENST00000579733.5:ENST00000262394.7:ENST00000348811.6:ENST00000584114.1:ENST00000487603.5:ENST00000583096.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	13	239	2	2.17014	2.95059	3.73104	6.20594e-4	6.60164e-5	0.0223951	0.0071649
chr19	54446031	54446131	7211749	0	-	0.44	(0.408,0.44]	chr19	732158	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	LENG8-AS1	ENSG00000226696.7	ENST00000652740.1:ENST00000429922.5:ENST00000416022.1	lncRNA	lncRNA	lncRNA	lncRNA	5	87	2	2.06888	2.950525	3.83217	0.00864911	1.79883e-4	0.0787025	0.0116696
chr15	52558437	52558536	6177210	0	-	0.333333	(0.32,0.35]	chr15	588892	8	INTRON	INTRON	ARPP19	ENSG00000128989.11	ENST00000566423.5:ENST00000249822.9:ENST00000561650.5:ENST00000563277.5:ENST00000567669.5:ENST00000569723.5:ENST00000569281.6:ENST00000564163.5:ENST00000563566.5:ENST00000561971.1:ENST00000567830.1	protein_coding	protein_coding	protein_coding	protein_coding	4	102	2	2.30731	2.950515	3.59372	0.0176772	4.81573e-5	0.10525	0.00566695
chr19	5926520	5926615	7125072	0	-	0.494737	(0.476,0.515]	chr19	717318	4	INTRON	INTRON	RANBP3	ENSG00000031823.14	ENST00000340578.10:ENST00000439268.6:ENST00000592771.5:ENST00000586344.5:ENST00000591092.5:ENST00000034275.12:ENST00000587479.2:ENST00000587411.5:ENST00000592621.5:ENST00000590623.5:ENST00000591736.5:ENST00000593025.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	46	2	2.82673	2.950475	3.07422	0.0134403	0.00506023	0.0946278	0.0646039
chr19	56099656	56099755	7214364	0	-	0.484848	(0.476,0.515]	chr19	732927	102	INTRON	INTRON	ZNF787	ENSG00000142409.6	ENST00000610935.2:ENST00000586787.1	protein_coding	protein_coding	protein_coding	protein_coding	2	46	2	2.82673	2.950475	3.07422	0.0134403	0.00506023	0.0946278	0.0646039
chr1	52390406	52390503	456926	0	-	0.402062	(0.378,0.408]	chr1	54887	7	INTRON	INTRON	ORC1	ENSG00000085840.13	ENST00000371568.8:ENST00000371566.1	protein_coding	protein_coding	protein_coding	protein_coding	2	48	2	2.72993	2.9504099999999998	3.17089	0.0188736	0.00357279	0.108861	0.0548435
chr11	118757981	118758078	5046029	0	-	0.402062	(0.378,0.408]	chr11	475757	3	INTRON	INTRON	DDX6	ENSG00000110367.14	ENST00000534980.7:ENST00000620157.4:ENST00000529162.1:ENST00000526070.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	48	2	2.72993	2.9504099999999998	3.17089	0.0188736	0.00357279	0.108861	0.0548435
chr13	24435179	24435277	5562443	0	-	0.387755	(0.378,0.408]	chr13	531516	9	CDS	CDS:EXON_MRNA	PARP4	ENSG00000102699.6	ENST00000381989.4	protein_coding	protein_coding	protein_coding	protein_coding	2	48	2	2.72993	2.9504099999999998	3.17089	0.0188736	0.00357279	0.108861	0.0548435
chr19	52057999	52058098	7205481	0	-	0.383838	(0.378,0.408]	chr19	731274	81	INTRON	INTRON	ZNF432	ENSG00000256087.7	ENST00000600368.5:ENST00000598446.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	48	2	2.72993	2.9504099999999998	3.17089	0.0188736	0.00357279	0.108861	0.0548435
chr10	68047155	68047255	4637664	0	-	0.35	(0.32,0.35]	chr10	426436	22	INTRON	INTRON	HERC4	ENSG00000148634.16	ENST00000373700.9:ENST00000412272.6:ENST00000395198.7:ENST00000473533.6:ENST00000427635.6:ENST00000513996.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	39	2	1.72898	2.950395	4.17181	0.04531	0.0425433	0.161951	0.149888
chr5	90678053	90678152	2421615	0	+	0.40404	(0.378,0.408]	chr5	232909	13	INTRON	INTRON	ADGRV1	ENSG00000164199.18	ENST00000405460.9:ENST00000640403.1:ENST00000639473.1:ENST00000639431.1:ENST00000640779.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	65	2	2.94613	2.95036	2.95459	0.00957623	0.00112461	0.0820838	0.0308177
chr16	2265260	2265340	6431674	0	-	0.3125	(0.28,0.32]	chr16	618816	1	INTRON	INTRON	RNPS1	ENSG00000205937.12	ENST00000397086.6:ENST00000566458.5:ENST00000320225.10:ENST00000565678.5:ENST00000561718.5:ENST00000568631.5:ENST00000569598.6:ENST00000301730.12:ENST00000567147.5:ENST00000561518.5:ENST00000564311.5:ENST00000570051.5:ENST00000564601.5:ENST00000564764.5:ENST00000566180.5:ENST00000562690.5:ENST00000569709.5:ENST00000565333.5:ENST00000565589.5:ENST00000564822.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	83	2	2.1895	2.950285	3.71107	0.0227063	8.39788e-4	0.124921	0.0266487
chr10	42806312	42806412	4428270	0	+	0.4	(0.378,0.408]	chr10	408133	37	INTRON	INTRON	BMS1	ENSG00000165733.8	ENST00000374518.6	protein_coding	protein_coding	protein_coding	protein_coding	2	48	2	2.84663	2.9502800000000002	3.05393	0.0133954	0.00551532	0.0946278	0.0672816
chr5	132960864	132960963	2725243	0	-	0.464646	(0.44,0.476]	chr5	256349	233	INTRON	INTRON	AFF4	ENSG00000072364.13	ENST00000265343.10:ENST00000378595.7:ENST00000491831.5:ENST00000465484.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	63	2	2.9195	2.95025	2.981	0.0102021	9.31193e-4	0.0850389	0.0278746
chr15	78887077	78887168	6069689	0	+	0.296703	(0.28,0.32]	chr15	578219	3	SS3_PROX	SS3_PROX:INTRON	MORF4L1	ENSG00000185787.15	ENST00000379535.8:ENST00000331268.9:ENST00000559930.5:ENST00000426013.7:ENST00000558746.5:ENST00000558893.5:ENST00000558830.5:ENST00000558522.5:ENST00000559619.5:ENST00000559345.5:ENST00000561171.5:ENST00000558502.5:ENST00000559258.5:ENST00000559690.5:ENST00000559158.5:ENST00000560422.5:ENST00000558539.5:ENST00000559244.5:ENST00000559751.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	58	2	2.67975	2.950245	3.22074	0.0252505	0.00362783	0.12011	0.055479
chr10	49961769	49961869	4432829	0	+	0.45	(0.44,0.476]	chr10	408699	29	INTRON	INTRON	TIMM23B:TIMM23B-AGAP6	ENSG00000204152.14:ENSG00000178440.8	ENST00000478381.5:ENST00000651259.3:ENST00000651763.1:ENST00000651208.1:ENST00000652716.1:ENST00000483296.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	95	2	1.892	2.9502249999999997	4.00845	0.00935701	1.1799e-4	0.0858596	0.00984015
chr2	107731446	107731546	1205864	0	-	0.3	(0.28,0.32]	chr2	128532	138	INTRON	INTRON	LINC01885:ENSG00000286769	ENSG00000237880.2:ENSG00000286769.1	ENST00000654481.1:ENST00000669817.1	lncRNA	lncRNA	lncRNA	lncRNA	4	106	2	2.62805	2.9501299999999997	3.27221	0.00681001	3.15212e-4	0.0711884	0.0159645
chr17	63789347	63789446	6661112	0	+	0.494949	(0.476,0.515]	chr17	649951	17	INTRON	INTRON	DDX42	ENSG00000198231.14	ENST00000581135.5:ENST00000578681.5:ENST00000583590.5:ENST00000389924.7:ENST00000359353.9:ENST00000580108.1:ENST00000578137.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	48	2	2.40608	2.950095	3.49411	0.0425709	9.23453e-4	0.148082	0.0278392
chr6	34287954	34288054	3083723	0	-	0.4	(0.378,0.408]	chr6	288610	84	UTR3	UTR3:EXON_MRNA	NUDT3:RPS10-NUDT3	ENSG00000272325.2:ENSG00000270800.3	ENST00000607016.2:ENST00000639725.1:ENST00000639877.1	protein_coding	protein_coding	protein_coding	protein_coding	4	80	2	2.04622	2.950065	3.85391	0.0149927	2.84248e-4	0.107704	0.015495
chr9	37585843	37585937	4251726	0	-	0.393617	(0.378,0.408]	chr9	391567	2	SS5_PROX	SS5_PROX:INTRON	TOMM5	ENSG00000175768.13	ENST00000540941.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	7	111	2	1.93036	2.950065	3.96977	0.00699856	9.19167e-5	0.0718189	0.00801007
chr22	31619050	31619143	7578477	0	-	0.505376	(0.476,0.515]	chr22	775532	7	UTR3	UTR3:EXON_MRNA	PISD	ENSG00000241878.12	ENST00000460723.5:ENST00000439502.7:ENST00000382151.6:ENST00000437808.5:ENST00000266095.9:ENST00000473770.5:ENST00000397500.5:ENST00000435900.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	74	2	2.5238	2.95006	3.37632	0.00218334	0.00195267	0.0435144	0.0400465
chr1	95141437	95141534	166808	0	+	0.340206	(0.32,0.35]	chr1	18106	3	INTRON	INTRON	TLCD4:TLCD4-RWDD3	ENSG00000152078.10:ENSG00000271092.5	ENST00000370203.9:ENST00000456991.5:ENST00000604534.5:ENST00000455656.1:ENST00000463375.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	54	2	2.57263	2.949965	3.3273	0.0312297	0.00218894	0.13151	0.0435144
chr6	33251334	33251417	3082208	0	-	0.337349	(0.32,0.35]	chr6	288166	4	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	VPS52	ENSG00000223501.9	ENST00000478934.5:ENST00000482399.5:ENST00000445902.3:ENST00000495981.5:ENST00000493674.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	54	2	2.57263	2.949965	3.3273	0.0312297	0.00218894	0.13151	0.0435144
chr17	59838984	59839082	6643724	0	+	0.489796	(0.476,0.515]	chr17	648784	7	EXON_MRNA	EXON_MRNA:INTRON	VMP1	ENSG00000062716.13	ENST00000262291.9:ENST00000592619.5:ENST00000591877.1:ENST00000591782.1:ENST00000588617.1:ENST00000592790.1:ENST00000587470.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	21	362	2	2.7037	2.9499649999999997	3.19623	7.0003e-6	4.78211e-6	0.00198457	0.00148158
chr7	73548102	73548201	3555228	0	-	0.525253	(0.515,0.57]	chr7	330846	41	INTRON	INTRON	BCL7B	ENSG00000106635.8	ENST00000223368.7:ENST00000411832.5:ENST00000482231.5:ENST00000454871.5:ENST00000463858.5:ENST00000448175.5:ENST00000455335.2:ENST00000464288.5:ENST00000416906.2:ENST00000493592.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	64	2	2.496	2.94994	3.40388	0.00225531	0.00142538	0.0436331	0.0340865
chr4	126484435	126484535	2235553	0	-	0.28	[0,0.28]	chr4	219023	189	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	4	121	2	2.64877	2.949815	3.25086	0.00757778	4.54073e-4	0.0749063	0.0192381
chr6	140898274	140898361	3241134	0	-	0.448276	(0.44,0.476]	chr6	301070	2	EXON_LNCRNA	EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ENSG00000234147	ENSG00000234147.3	ENST00000650553.2:ENST00000692940.1:ENST00000683641.1:ENST00000682196.1:ENST00000684320.1:ENST00000683889.1:ENST00000683062.1:ENST00000682608.1:ENST00000455011.2:ENST00000682812.1:ENST00000683340.1:ENST00000683841.1:ENST00000683589.1:ENST00000684268.1:ENST00000683480.1:ENST00000684120.1	lncRNA	lncRNA	lncRNA	lncRNA	3	63	2	2.39003	2.949785	3.50954	0.0106488	0.00116647	0.0915714	0.0312127
chr20	50598803	50598901	7354499	0	-	0.602041	(0.57,1]	chr20	750001	7	INTRON	INTRON	RIPOR3	ENSG00000042062.13	ENST00000327979.8:ENST00000045083.6:ENST00000462493.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	25	2	1.52818	2.94977	4.37136	0.0508101	0.00345135	0.175989	0.0517761
chr1	236893965	236894063	343514	0	+	0.357143	(0.35,0.378]	chr1	39980	28	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	MTR	ENSG00000116984.15	ENST00000680454.1:ENST00000366577.10:ENST00000674797.2:ENST00000679569.1:ENST00000650888.1:ENST00000535889.6:ENST00000651455.1:ENST00000681102.1:ENST00000679842.1:ENST00000681177.1:ENST00000681937.1:ENST00000366576.3:ENST00000470570.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	69	2	2.63153	2.949735	3.26794	0.00562761	0.00257067	0.0653997	0.0466761
chr2	26779773	26779871	715683	0	+	0.479592	(0.476,0.515]	chr2	82657	14	UTR3	UTR3:EXON_MRNA:INTRON	SLC35F6:CENPA	ENSG00000213699.9:ENSG00000115163.15	ENST00000344420.10:ENST00000429494.5:ENST00000475662.5:ENST00000414029.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	10	164	2	2.25799	2.94972	3.64145	7.45091e-4	2.67082e-5	0.0251072	0.00407562
chr1	45520331	45520428	439732	0	-	0.42268	(0.408,0.44]	chr1	53271	9	INTRON	INTRON	PRDX1	ENSG00000117450.15	ENST00000676549.1:ENST00000424390.2:ENST00000447184.6:ENST00000262746.5:ENST00000319248.13:ENST00000372079.1	protein_coding	protein_coding	protein_coding	protein_coding	2	48	2	2.74518	2.9496599999999997	3.15414	0.0152229	0.00469847	0.108535	0.0600108
chr22	41830875	41830975	7525984	0	+	0.43	(0.408,0.44]	chr22	769348	52	UTR3	UTR3:EXON_MRNA	CCDC134	ENSG00000100147.14	ENST00000255784.6	protein_coding	protein_coding	protein_coding	protein_coding	5	101	2	2.67392	2.94961	3.2253	0.00106946	4.07735e-4	0.0300133	0.0185763
chr20	41585432	41585532	7344215	0	-	0.44	(0.408,0.44]	chr20	748566	209	INTRON	INTRON	CHD6	ENSG00000124177.16	ENST00000373233.8:ENST00000373222.3:ENST00000482596.1:ENST00000440647.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	128	2	2.17484	2.9496000000000002	3.72436	0.003472	1.56427e-5	0.052042	0.00298427
chr9	77914660	77914760	4270776	0	-	0.34	(0.32,0.35]	chr9	392874	985	INTRON	INTRON	GNAQ	ENSG00000156052.11	ENST00000286548.9:ENST00000411677.1	protein_coding	protein_coding	protein_coding	protein_coding	2	54	2	2.90786	2.949555	2.99125	0.00993008	0.00958447	0.0877296	0.0820838
chr3	123961217	123961317	1804179	0	-	0.63	(0.57,1]	chr3	181283	1	CDS_START	CDS_START:CDS:UTR5:EXON_MRNA:EXON_LNCRNA	CCDC14	ENSG00000175455.16	ENST00000409697.8:ENST00000488653.6:ENST00000495381.5:ENST00000409657.5:ENST00000433542.7:ENST00000310351.8:ENST00000435910.5:ENST00000477268.5:ENST00000417438.1:ENST00000478956.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	79	2	2.64388	2.949505	3.25513	1.46112e-4	2.35468e-5	0.0105174	0.00396325
chr5	57243668	57243768	2358761	0	+	0.48	(0.476,0.515]	chr5	227598	61	INTRON	INTRON	GPBP1	ENSG00000062194.16	ENST00000424459.7:ENST00000514387.6:ENST00000506184.7:ENST00000511209.5:ENST00000264779.6:ENST00000513524.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	151	2	2.75798	2.94949	3.141	1.33345e-4	1.21235e-4	0.0105204	0.0094154
chr6	43559286	43559384	3097162	0	-	0.418367	(0.408,0.44]	chr6	290073	3	INTRON	INTRON	XPO5	ENSG00000124571.18	ENST00000265351.12:ENST00000496341.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	47	2	2.58624	2.949405	3.31257	0.0273686	0.00198621	0.123904	0.0411469
chr1	65258827	65258926	135579	0	+	0.333333	(0.32,0.35]	chr1	15341	38	INTRON	INTRON	DNAJC6	ENSG00000116675.16	ENST00000463018.5:ENST00000494710.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	99	2	2.3805	2.94929	3.51808	0.0021364	0.00151238	0.0428801	0.0352794
chr20	35728416	35728515	7336410	0	-	0.252525	[0,0.28]	chr20	747462	29	INTRON	INTRON	RBM39	ENSG00000131051.24	ENST00000253363.11:ENST00000639702.1:ENST00000656873.1:ENST00000463004.5:ENST00000361162.10:ENST00000461283.5:ENST00000403542.6:ENST00000338163.10:ENST00000528062.7:ENST00000429968.5:ENST00000444878.5:ENST00000665058.1:ENST00000492779.5:ENST00000448303.5:ENST00000374038.7:ENST00000412738.5:ENST00000434927.5:ENST00000425184.5:ENST00000481037.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	91	2	2.06132	2.949235	3.83715	0.0408268	3.63888e-4	0.1451	0.0170637
chr10	16437990	16438089	4397792	0	+	0.484848	(0.476,0.515]	chr10	406031	1	INTRON	INTRON	PTER	ENSG00000165983.15	ENST00000423462.6:ENST00000378000.5:ENST00000535784.7	protein_coding	protein_coding	protein_coding	protein_coding	2	46	2	2.8863	2.949135	3.01197	0.0111679	0.00633162	0.0877435	0.0722266
chr10	96142953	96143053	4502326	0	+	0.51	(0.476,0.515]	chr10	414481	73	INTRON	INTRON	ZNF518A	ENSG00000177853.15	ENST00000614149.2:ENST00000488700.5:ENST00000624776.4:ENST00000539666.5:ENST00000563195.1:ENST00000316045.10	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	46	2	2.8863	2.949135	3.01197	0.0111679	0.00633162	0.0877435	0.0722266
chr16	70403589	70403688	6511109	0	-	0.50505	(0.476,0.515]	chr16	630689	21	INTRON	INTRON	ST3GAL2	ENSG00000157350.13	ENST00000342907.3:ENST00000566097.1:ENST00000561708.1:ENST00000567586.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	46	2	2.8863	2.949135	3.01197	0.0111679	0.00633162	0.0877435	0.0722266
chr15	34868100	34868199	6134126	0	-	0.494949	(0.476,0.515]	chr15	584450	6	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	AQR	ENSG00000021776.11	ENST00000156471.10:ENST00000543879.6:ENST00000559090.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	31	2	1.79693	2.94903	4.10113	0.0649782	0.0226984	0.179417	0.124921
chr17	30771649	30771748	6590211	0	+	0.484848	(0.476,0.515]	chr17	640888	13	INTRON	INTRON	SUZ12P1	ENSG00000264538.7	ENST00000578195.6:ENST00000582329.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	2	31	2	1.79693	2.94903	4.10113	0.0649782	0.0226984	0.179417	0.124921
chr10	131930164	131930264	4537158	0	+	0.33	(0.32,0.35]	chr10	418866	172	INTRON	INTRON	PPP2R2D	ENSG00000175470.20	ENST00000455566.6:ENST00000616467.4:ENST00000482010.6:ENST00000470416.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	32	2	1.95271	2.949	3.94529	0.0693433	0.0431213	0.184298	0.162255
chr6	104786117	104786216	3171744	0	-	0.434343	(0.408,0.44]	chr6	295865	9	EXON_MRNA	EXON_MRNA:INTRON	HACE1	ENSG00000085382.12	ENST00000262903.9:ENST00000369127.8:ENST00000416605.6:ENST00000369125.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	47	2	2.89193	2.94894	3.00595	0.00950364	0.00781452	0.0863579	0.0759016
chrX	71381542	71381642	7678365	0	+	0.44	(0.408,0.44]	chrX	786165	4	SS3_PROX	SS3_PROX:INTRON	TAF1	ENSG00000147133.17	ENST00000683202.1:ENST00000373790.9:ENST00000423759.6:ENST00000683782.1:ENST00000683715.1:ENST00000683668.1:ENST00000276072.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	47	2	2.89193	2.94894	3.00595	0.00950364	0.00781452	0.0863579	0.0759016
chr16	87743931	87744030	6538451	0	-	0.454545	(0.44,0.476]	chr16	633538	10	INTRON	INTRON	KLHDC4	ENSG00000104731.14	ENST00000567298.5:ENST00000270583.10:ENST00000347925.9:ENST00000353170.9:ENST00000316853.10:ENST00000562155.5:ENST00000622456.4:ENST00000562261.1:ENST00000566661.5:ENST00000564484.5:ENST00000565328.5:ENST00000569747.5:ENST00000564396.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	47	2	2.81896	2.94879	3.07862	0.0120766	0.0060153	0.0962311	0.0674604
chr7	157164318	157164418	3454194	0	+	0.42	(0.408,0.44]	chr7	322901	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	UBE3C	ENSG00000009335.18	ENST00000611269.4:ENST00000348165.10:ENST00000389103.4:ENST00000430750.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	86	2	2.4473	2.9487449999999997	3.45019	0.00152664	0.0013419	0.0353936	0.0336974
chr19	36451990	36452089	7173938	0	-	0.363636	(0.35,0.378]	chr19	724996	16	INTRON	INTRON	ZNF566	ENSG00000186017.16	ENST00000493391.6:ENST00000392170.7:ENST00000452939.7:ENST00000427002.2:ENST00000424129.7:ENST00000434377.6	protein_coding	protein_coding	protein_coding	protein_coding	2	52	2	2.72498	2.94871	3.17244	0.0168499	0.00487788	0.11068	0.0607461
chr12	56668027	56668124	5335872	0	-	0.463918	(0.44,0.476]	chr12	510168	14	INTRON	INTRON	PTGES3	ENSG00000110958.16	ENST00000537473.2:ENST00000614328.4:ENST00000262033.11:ENST00000414274.7:ENST00000436399.6:ENST00000448157.6:ENST00000456859.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	74	2	2.46422	2.9486350000000003	3.43305	0.00282908	0.00159668	0.0491595	0.0364566
chr5	151774504	151774604	2521817	0	+	0.25	[0,0.28]	chr5	241280	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	G3BP1	ENSG00000145907.16	ENST00000523519.5:ENST00000520578.6:ENST00000627077.2:ENST00000678976.1:ENST00000677408.1:ENST00000678070.1:ENST00000678964.1:ENST00000678925.1:ENST00000394123.7:ENST00000676978.1:ENST00000679289.1:ENST00000677493.1:ENST00000676644.1:ENST00000677757.1:ENST00000522761.6:ENST00000677909.1:ENST00000676827.1:ENST00000520177.6:ENST00000676634.1:ENST00000678854.1:ENST00000677602.1:ENST00000519832.1:ENST00000518726.5:ENST00000676911.1:ENST00000356245.8:ENST00000678646.1:ENST00000677381.1:ENST00000678904.1:ENST00000678910.1:ENST00000678101.1:ENST00000677105.1:ENST00000676813.1:ENST00000522367.6:ENST00000517947.5:ENST00000507878.7:ENST00000520006.2:ENST00000678369.1:ENST00000677433.1:ENST00000678564.1:ENST00000677252.1:ENST00000677369.1:ENST00000677284.1:ENST00000676894.1:ENST00000677923.1:ENST00000677323.1:ENST00000522666.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	89	2	2.8486	2.948635	3.04867	0.0104221	0.00254189	0.085482	0.0465056
chr17	78993450	78993549	6846546	0	-	0.40404	(0.378,0.408]	chr17	677553	8	UTR3	UTR3:EXON_MRNA:INTRON	CANT1	ENSG00000171302.17	ENST00000392446.10:ENST00000302345.6:ENST00000620915.4:ENST00000592228.1:ENST00000591773.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	65	2	2.51733	2.948515	3.3797	0.00808319	0.00154501	0.0766625	0.0362716
chr13	45341730	45341830	5479937	0	+	0.63	(0.57,1]	chr13	524990	1	SS5_PROX	SS5_PROX:INTRON	TPT1-AS1	ENSG00000170919.16	ENST00000517509.5:ENST00000658870.1:ENST00000653307.1:ENST00000661180.1:ENST00000655984.1:ENST00000654229.1:ENST00000519454.6:ENST00000412946.6:ENST00000665586.1:ENST00000520590.5:ENST00000521336.6:ENST00000655666.1:ENST00000669281.1:ENST00000520622.6:ENST00000657761.1:ENST00000668209.1:ENST00000659577.1:ENST00000523506.6:ENST00000661291.1:ENST00000655385.1:ENST00000652823.1:ENST00000524062.5:ENST00000655124.1:ENST00000662212.1:ENST00000522859.5:ENST00000664881.1:ENST00000669627.1:ENST00000520924.5:ENST00000618947.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	5	46	2	2.06823	2.94812	3.82801	0.00680672	9.41714e-5	0.0711884	0.00813008
chr16	88729339	88729437	6539631	0	-	0.591837	(0.57,1]	chr16	633912	13	INTRON	INTRON	PIEZO1	ENSG00000103335.22	ENST00000301015.14	protein_coding	protein_coding	protein_coding	protein_coding	5	53	2	2.9315	2.948105	2.96471	9.1984e-4	1.58729e-4	0.0278396	0.0108333
chr4	55403338	55403438	1960664	0	+	0.27	[0,0.28]	chr4	196551	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	TMEM165	ENSG00000134851.13	ENST00000381334.10:ENST00000506198.5:ENST00000508404.5:ENST00000511710.1:ENST00000502797.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	13	275	2	2.20722	2.948	3.68878	7.10178e-4	1.31255e-4	0.0242715	0.0104294
chr13	50064507	50064607	5594414	0	-	0.19	[0,0.28]	chr13	534699	145	INTRON	INTRON	DLEU2	ENSG00000231607.14	ENST00000621282.4:ENST00000688690.1:ENST00000668305.1:ENST00000425586.5:ENST00000686946.1:ENST00000458725.7:ENST00000692504.1:ENST00000443587.6:ENST00000686700.1:ENST00000691340.1:ENST00000433070.7:ENST00000659339.1:ENST00000662092.1:ENST00000666359.2:ENST00000449579.2:ENST00000421758.6:ENST00000690259.1	lncRNA	lncRNA	lncRNA	lncRNA	2	66	2	2.9385	2.947895	2.95729	0.0142776	0.0101824	0.0963703	0.089002
chr7	105282845	105282944	3602841	0	-	0.272727	[0,0.28]	chr7	336144	136	INTRON	INTRON	SRPK2	ENSG00000135250.17	ENST00000393651.8:ENST00000489828.5:ENST00000482897.5:ENST00000460391.5:ENST00000462282.5:ENST00000465112.5:ENST00000482862.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	66	2	2.9385	2.947895	2.95729	0.0142776	0.0101824	0.0963703	0.089002
chr8	108215613	108215712	4022924	0	-	0.272727	[0,0.28]	chr8	367621	5	INTRON	INTRON	EIF3E	ENSG00000104408.11	ENST00000678042.1:ENST00000678773.1:ENST00000677409.1:ENST00000676892.1:ENST00000523674.2:ENST00000677674.1:ENST00000220849.10:ENST00000678937.1:ENST00000677084.1:ENST00000676706.1:ENST00000518100.6:ENST00000677040.1:ENST00000676698.1:ENST00000522352.6:ENST00000521297.2:ENST00000677501.1:ENST00000519030.6:ENST00000519627.2:ENST00000518345.2:ENST00000522445.6:ENST00000678334.1:ENST00000678023.1:ENST00000678797.1:ENST00000677614.1:ENST00000676642.1:ENST00000677965.1:ENST00000678901.1:ENST00000678243.1:ENST00000676663.1:ENST00000679198.1:ENST00000677524.1:ENST00000521614.6:ENST00000678004.1:ENST00000678881.1:ENST00000677590.1:ENST00000677272.1:ENST00000677317.1:ENST00000676530.1:ENST00000677696.1:ENST00000519517.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	66	2	2.9385	2.947895	2.95729	0.0142776	0.0101824	0.0963703	0.089002
chr1	93217441	93217539	163554	0	+	0.459184	(0.44,0.476]	chr1	17730	3	SS3_PROX	SS3_PROX:INTRON	CCDC18	ENSG00000122483.18	ENST00000343253.11:ENST00000401026.7:ENST00000690592.1:ENST00000370276.6:ENST00000690025.1:ENST00000692873.1:ENST00000455267.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	65	2	2.21079	2.9477599999999997	3.68473	0.0194581	5.47507e-4	0.119831	0.0215463
chr18	694334	694434	6939593	0	-	0.46	(0.44,0.476]	chr18	686429	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	ENOSF1	ENSG00000132199.20	ENST00000647584.2:ENST00000383578.7:ENST00000340116.12:ENST00000581475.5:ENST00000580982.5:ENST00000585128.6:ENST00000584453.5:ENST00000578651.5:ENST00000585004.5:ENST00000579053.5:ENST00000583771.1:ENST00000580605.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	65	2	2.21079	2.9477599999999997	3.68473	0.0194581	5.47507e-4	0.119831	0.0215463
chr12	110386828	110386917	5409023	0	-	0.393258	(0.378,0.408]	chr12	516437	5	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	ANAPC7	ENSG00000196510.14	ENST00000455511.9:ENST00000450008.3:ENST00000548234.1:ENST00000546720.5:ENST00000552170.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	64	2	2.65815	2.947615	3.23708	0.00391167	0.00365053	0.0569957	0.0535094
chr19	52190944	52191044	7094267	0	+	0.53	(0.515,0.57]	chr19	711163	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	PPP2R1A	ENSG00000105568.18	ENST00000490868.5:ENST00000454220.6:ENST00000322088.11:ENST00000477989.1:ENST00000628959.1:ENST00000468280.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	41	2	2.74772	2.9475100000000003	3.1473	0.0142192	0.00397184	0.103638	0.0549214
chr2	62302336	62302436	790350	0	+	0.54	(0.515,0.57]	chr2	88708	45	INTRON	INTRON	ENSG00000228541	ENSG00000228541.2	ENST00000688476.1:ENST00000689590.1:ENST00000687402.1:ENST00000687773.1	lncRNA	lncRNA	lncRNA	lncRNA	2	41	2	2.74772	2.9475100000000003	3.1473	0.0142192	0.00397184	0.103638	0.0549214
chr7	102178857	102178957	3369994	0	+	0.57	(0.515,0.57]	chr7	315291	2	SS5_PROX	SS5_PROX:INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000560541.5:ENST00000558836.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	41	2	2.74772	2.9475100000000003	3.1473	0.0142192	0.00397184	0.103638	0.0549214
chr7	154992348	154992445	3682737	0	-	0.515464	(0.515,0.57]	chr7	341851	9	INTRON	INTRON	PAXIP1	ENSG00000157212.19	ENST00000457196.5:ENST00000404141.6:ENST00000397192.5:ENST00000473219.5:ENST00000419436.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	41	2	2.74772	2.9475100000000003	3.1473	0.0142192	0.00397184	0.103638	0.0549214
chr5	149550550	149550650	2751078	0	-	0.41	(0.408,0.44]	chr5	259093	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CSNK1A1	ENSG00000113712.19	ENST00000261798.10:ENST00000377843.8:ENST00000657001.1:ENST00000515768.6:ENST00000606719.6:ENST00000657462.1:ENST00000661952.1:ENST00000662268.1:ENST00000657706.1:ENST00000670598.1:ENST00000523203.5:ENST00000515748.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	62	2	2.69457	2.947455	3.20034	0.00398025	0.00331036	0.0549214	0.0527031
chr10	17667406	17667506	4399499	0	+	0.36	(0.35,0.378]	chr10	406156	65	INTRON	INTRON	STAM	ENSG00000136738.15	ENST00000377524.8:ENST00000377500.1:ENST00000445846.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	94	2	2.36677	2.9472699999999996	3.52777	0.0139343	6.01383e-5	0.0957526	0.00639073
chr1	39880775	39880874	428246	0	-	0.343434	(0.32,0.35]	chr1	52034	43	INTRON	INTRON	TRIT1	ENSG00000043514.17	ENST00000316891.10:ENST00000648678.1:ENST00000537440.5:ENST00000372818.5:ENST00000462797.5:ENST00000441669.6:ENST00000495175.6:ENST00000491865.5:ENST00000541099.5:ENST00000492612.6:ENST00000489945.5:ENST00000486825.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	88	2	2.27939	2.94723	3.61507	0.00844518	6.48785e-4	0.0776969	0.0230814
chr10	43611236	43611335	4429567	0	+	0.434343	(0.408,0.44]	chr10	408270	15	INTRON	INTRON	ZNF485	ENSG00000198298.13	ENST00000430885.5:ENST00000374435.3:ENST00000361807.8	protein_coding	protein_coding	protein_coding	protein_coding	2	34	2	2.05947	2.9472050000000003	3.83494	0.0411442	0.0333232	0.161534	0.134145
chr4	56438404	56438502	1962639	0	+	0.418367	(0.408,0.44]	chr4	196866	17	INTRON	INTRON	PAICS	ENSG00000128050.9	ENST00000514888.5:ENST00000264221.6:ENST00000505164.5:ENST00000504188.1:ENST00000399688.7:ENST00000510584.1:ENST00000512576.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	34	2	2.05947	2.9472050000000003	3.83494	0.0411442	0.0333232	0.161534	0.134145
chr4	129035496	129035596	2240700	0	-	0.39	(0.378,0.408]	chr4	219291	313	INTRON	INTRON	SCLT1	ENSG00000151466.12	ENST00000651532.1:ENST00000281142.10:ENST00000503215.5:ENST00000439369.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	48	2	2.66785	2.94692	3.22599	0.0224639	0.00288652	0.11692	0.0494641
chr19	17239877	17239975	7151173	0	-	0.540816	(0.515,0.57]	chr19	722562	35	INTRON	INTRON	NR2F6	ENSG00000160113.6	ENST00000291442.4:ENST00000596878.1	protein_coding	protein_coding	protein_coding	protein_coding	2	40	2	2.83501	2.9467	3.05839	0.0117686	0.00485936	0.0894475	0.0640618
chr3	14437261	14437360	1369741	0	+	0.535354	(0.515,0.57]	chr3	144322	41	INTRON	INTRON	SLC6A6	ENSG00000131389.18	ENST00000613060.4:ENST00000618278.4:ENST00000610642.4:ENST00000649500.1:ENST00000622186.5:ENST00000621751.4:ENST00000613930.4:ENST00000622176.4:ENST00000615188.1:ENST00000452775.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	40	2	2.83501	2.9467	3.05839	0.0117686	0.00485936	0.0894475	0.0640618
chr3	138776105	138776204	1830912	0	-	0.525253	(0.515,0.57]	chr3	184056	56	INTRON	INTRON	PIK3CB	ENSG00000051382.9	ENST00000674063.1:ENST00000477593.5:ENST00000462898.5:ENST00000483968.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	40	2	2.83501	2.9467	3.05839	0.0117686	0.00485936	0.0894475	0.0640618
chr7	158818451	158818551	3689703	0	-	0.53	(0.515,0.57]	chr7	342421	190	INTRON	INTRON	ESYT2	ENSG00000117868.18	ENST00000251527.10:ENST00000275418.13:ENST00000652148.1:ENST00000483958.5:ENST00000497111.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	40	2	2.83501	2.9467	3.05839	0.0117686	0.00485936	0.0894475	0.0640618
chr16	22508687	22508785	6322696	0	+	0.357143	(0.35,0.378]	chr16	605452	9	INTRON	INTRON	NPIPB5	ENSG00000243716.11	ENST00000415654.5:ENST00000415833.6:ENST00000546168.5:ENST00000543407.5:ENST00000356156.7:ENST00000541154.5:ENST00000545375.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	67	2	2.72093	2.946685	3.17244	0.00487788	0.00314173	0.0607461	0.0514466
chr1	205116780	205116880	622381	0	-	0.39	(0.378,0.408]	chr1	74020	5	INTRON	INTRON	RBBP5	ENSG00000117222.14	ENST00000367164.1:ENST00000264515.11:ENST00000484379.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	48	2	2.90162	2.9466599999999996	2.9917	0.0113157	0.0068789	0.0886121	0.0749442
chr10	21703202	21703302	4406122	0	+	0.32	(0.28,0.32]	chr10	406537	62	INTRON	INTRON	MLLT10	ENSG00000078403.17	ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000651298.1:ENST00000377059.7:ENST00000651382.1:ENST00000438473.6:ENST00000420525.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	94	2	2.5905300000000002	2.94658	3.30263	0.0038504	0.0020216	0.0542786	0.0416117
chr8	52710385	52710485	3951068	0	-	0.32	(0.28,0.32]	chr8	362390	231	INTRON	INTRON	RB1CC1	ENSG00000023287.13	ENST00000025008.10:ENST00000435644.6:ENST00000521611.1:ENST00000518710.5:ENST00000517963.1:ENST00000518211.1:ENST00000518468.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	94	2	2.5905300000000002	2.94658	3.30263	0.0038504	0.0020216	0.0542786	0.0416117
chr16	74326872	74326972	6523117	0	-	0.37	(0.35,0.378]	chr16	631552	136	INTRON	INTRON	ENSG00000259972	ENSG00000259972.3	ENST00000565313.1:ENST00000561921.1	lncRNA	lncRNA	lncRNA	lncRNA	4	81	2	2.28182	2.946575	3.61133	0.00637232	9.14099e-4	0.0724821	0.0278396
chr19	28429149	28429249	7165434	0	-	0.51	(0.476,0.515]	chr19	724147	4	SS5_PROX	SS5_PROX:INTRON	ENSG00000260725	ENSG00000260725.1	ENST00000567877.1	lncRNA	lncRNA	lncRNA	lncRNA	5	100	2	2.74942	2.9465250000000003	3.14363	9.59979e-4	4.25082e-4	0.0282401	0.018441
chr16	47474862	47474962	6343437	0	+	0.49	(0.476,0.515]	chr16	608849	105	INTRON	INTRON	PHKB	ENSG00000102893.17	ENST00000566037.6:ENST00000566044.5:ENST00000299167.12:ENST00000696809.1:ENST00000323584.10:ENST00000565424.2:ENST00000567402.5:ENST00000563376.5:ENST00000564873.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	74	2	2.55884	2.9465	3.33416	0.00230489	0.00186081	0.0428247	0.039946
chr1	149833478	149833574	220068	0	+	0.46875	(0.44,0.476]	chr1	24772	6	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	H4C14	ENSG00000270882.3	ENST00000618193.1:ENST00000614272.1:ENST00000613412.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	4	82	2	2.74733	2.94646	3.14559	0.00384923	9.96884e-4	0.0562562	0.0288906
chr6	166954694	166954791	3264303	0	-	0.525773	(0.515,0.57]	chr6	303043	23	EXON_MRNA	EXON_MRNA:INTRON	ENSG00000249141:RNASET2	ENSG00000249141.1:ENSG00000026297.17	ENST00000507747.1:ENST00000508775.6:ENST00000683770.1:ENST00000611959.2:ENST00000620173.5:ENST00000682774.1:ENST00000684236.1:ENST00000683968.1:ENST00000366855.10:ENST00000421787.5:ENST00000476238.6:ENST00000028008.9:ENST00000478180.6:ENST00000358165.7:ENST00000683158.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	64	2	2.27116	2.9464	3.62164	0.00601759	5.41944e-4	0.0700813	0.0215026
chr14	21222860	21222959	5834691	0	-	0.515152	(0.476,0.515]	chr14	554424	94	INTRON	INTRON	HNRNPC	ENSG00000092199.19	ENST00000336053.10:ENST00000553300.6:ENST00000554969.5:ENST00000556142.5:ENST00000554455.5:ENST00000430246.6:ENST00000553753.5:ENST00000555309.5:ENST00000555914.5:ENST00000557442.5:ENST00000556628.5:ENST00000556513.5:ENST00000555883.5:ENST00000557201.5:ENST00000556897.5:ENST00000420743.6:ENST00000557157.5:ENST00000554539.5:ENST00000554383.5:ENST00000554417.1:ENST00000555215.5:ENST00000555137.5:ENST00000554891.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	62	2	2.26789	2.946265	3.62464	0.0176567	5.079e-4	0.105233	0.0202328
chr17	61838734	61838834	6808686	0	-	0.29	(0.28,0.32]	chr17	672605	296	INTRON	INTRON	BRIP1	ENSG00000136492.10	ENST00000259008.7:ENST00000682755.1:ENST00000682453.1:ENST00000683039.1:ENST00000682989.1:ENST00000682589.1:ENST00000683235.1:ENST00000682477.1:ENST00000684584.1:ENST00000577598.5:ENST00000682066.1:ENST00000584322.2:ENST00000683381.1:ENST00000579028.2:ENST00000682611.1:ENST00000683692.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	58	2	2.62686	2.946185	3.26551	0.0289217	0.0030714	0.1274	0.0509893
chr3	47500377	47500474	1682923	0	-	0.391753	(0.378,0.408]	chr3	171907	16	INTRON	INTRON	ELP6	ENSG00000163832.16	ENST00000296149.9:ENST00000442215.6:ENST00000446787.5:ENST00000439305.5:ENST00000412761.5:ENST00000444760.5:ENST00000445044.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	78	2	2.20712	2.946145	3.68517	0.00978751	3.90172e-4	0.0835427	0.0177751
chr3	88164457	88164557	1458045	0	+	0.5	(0.476,0.515]	chr3	153232	66	INTRON	INTRON	C3orf38	ENSG00000179021.10	ENST00000485219.1	protein_coding	processed_transcript	protein_coding	processed_transcript	5	99	2	2.53419	2.94613	3.35807	0.00251905	1.37324e-4	0.0446195	0.0100829
chr3	50008512	50008612	1423645	0	+	0.37	(0.35,0.378]	chr3	149994	86	INTRON	INTRON	RBM6	ENSG00000004534.15	ENST00000442092.5:ENST00000443081.5:ENST00000419610.5:ENST00000441115.5:ENST00000422955.5:ENST00000454079.5:ENST00000266022.9:ENST00000425608.5:ENST00000434592.5:ENST00000464013.5:ENST00000483350.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	109	2	2.88445	2.9461250000000003	3.0078	0.00212567	2.11734e-4	0.041756	0.0127388
chr20	49128083	49128183	7351769	0	-	0.46	(0.44,0.476]	chr20	749646	31	INTRON	INTRON	STAU1	ENSG00000124214.21	ENST00000371856.7:ENST00000371828.7:ENST00000340954.11:ENST00000347458.9:ENST00000360426.8:ENST00000371792.5:ENST00000371802.5:ENST00000437404.2	protein_coding	protein_coding	protein_coding	protein_coding	3	62	2	2.86452	2.946015	3.02751	0.00715968	0.00159222	0.0723634	0.0367961
chr7	8063129	8063228	3279941	0	+	0.444444	(0.44,0.476]	chr7	304783	25	INTRON	INTRON	GLCCI1	ENSG00000106415.13	ENST00000223145.10:ENST00000430798.1:ENST00000414914.5:ENST00000474269.5:ENST00000489405.5:ENST00000438949.1:ENST00000496617.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	62	2	2.86452	2.946015	3.02751	0.00715968	0.00159222	0.0723634	0.0367961
chr2	86623571	86623669	1171994	0	-	0.734694	(0.57,1]	chr2	125091	8	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	RNF103	ENSG00000239305.7	ENST00000237455.5:ENST00000477307.5:ENST00000472680.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	26	2	2.79889	2.9460100000000002	3.09313	0.0110274	0.00369015	0.0927187	0.0535094
chr8	102353780	102353880	4012162	0	-	0.45	(0.44,0.476]	chr8	367218	63	INTRON	INTRON	UBR5	ENSG00000104517.13	ENST00000520539.6:ENST00000220959.8:ENST00000521922.5	protein_coding	protein_coding	protein_coding	protein_coding	14	223	2	2.39521	2.94598	3.49675	9.46126e-5	1.86548e-5	0.008161	0.00352007
chr19	57863424	57863524	7106172	0	+	0.51	(0.476,0.515]	chr19	713245	34	UTR3	UTR3:EXON_MRNA	ZNF587	ENSG00000198466.12	ENST00000339656.8:ENST00000419854.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	12	227	2	2.7553	2.945865	3.13643	6.53328e-5	1.08471e-5	0.00715707	0.00242118
chr7	149485028	149485128	3671706	0	-	0.41	(0.408,0.44]	chr7	340777	69	INTRON	INTRON	ZNF746	ENSG00000181220.18	ENST00000644635.1:ENST00000340622.8:ENST00000458143.7:ENST00000685153.1	protein_coding	protein_coding	protein_coding	protein_coding	3	64	2	2.05947	2.9458200000000003	3.83217	0.0333232	1.79883e-4	0.134145	0.0116696
chr12	50148071	50148171	5322979	0	-	0.52	(0.515,0.57]	chr12	507511	2	SS5_PROX	SS5_PROX:INTRON	CERS5	ENSG00000139624.14	ENST00000317551.12:ENST00000422340.6:ENST00000551697.5:ENST00000380189.8:ENST00000547787.5:ENST00000438450.6:ENST00000542320.5:ENST00000547800.2:ENST00000549389.5:ENST00000550258.5:ENST00000547455.5:ENST00000546514.1:ENST00000549942.1:ENST00000550899.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	85	2	2.79572	2.94576	3.0958	5.63557e-4	5.08572e-4	0.0219303	0.0202333
chr1	29166312	29166396	410286	0	-	0.440476	(0.44,0.476]	chr1	49410	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SRSF4	ENSG00000116350.18	ENST00000373795.7:ENST00000691479.1:ENST00000634348.1:ENST00000466448.4:ENST00000605204.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	62	2	2.49823	2.945725	3.39322	0.00718224	0.00187283	0.0756118	0.0390476
chr7	155664374	155664474	3452092	0	+	0.46	(0.44,0.476]	chr7	322642	191	INTRON	INTRON	RBM33	ENSG00000184863.11	ENST00000287912.7:ENST00000401878.8:ENST00000392759.7	protein_coding	protein_coding	protein_coding	protein_coding	6	122	2	2.47804	2.945715	3.41339	0.00325838	1.64782e-5	0.0508595	0.00306044
chr1	29046247	29046346	60286	0	+	0.494949	(0.476,0.515]	chr1	7705	49	INTRON	INTRON	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000647918.1:ENST00000646800.1:ENST00000644342.1:ENST00000646189.1:ENST00000482464.6:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000646260.1:ENST00000373798.5:ENST00000644600.1:ENST00000649674.1:ENST00000643173.1:ENST00000343067.9:ENST00000644780.1:ENST00000650265.1:ENST00000648181.1:ENST00000643604.1:ENST00000648891.1:ENST00000373797.2:ENST00000349460.9:ENST00000645184.1:ENST00000645111.1:ENST00000643302.1:ENST00000645999.1:ENST00000642643.1:ENST00000636666.1:ENST00000644848.1:ENST00000644470.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	63	2	2.8863	2.945685	3.00507	0.0111679	8.38796e-4	0.0877435	0.0263691
chr12	68819852	68819952	5163093	0	+	0.28	[0,0.28]	chr12	488902	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	MDM2	ENSG00000135679.27	ENST00000258149.11:ENST00000393412.7:ENST00000311420.13:ENST00000393417.8:ENST00000258148.11:ENST00000539479.6:ENST00000523991.5:ENST00000543323.5:ENST00000393415.7:ENST00000393416.7:ENST00000481186.6:ENST00000545204.2:ENST00000544561.6:ENST00000665020.1:ENST00000666617.1:ENST00000671567.1:ENST00000393410.5:ENST00000496959.5:ENST00000299252.8:ENST00000360430.6:ENST00000517852.5:ENST00000546048.5:ENST00000540352.5:ENST00000542502.5:ENST00000537182.5:ENST00000536089.5:ENST00000393413.7:ENST00000350057.9:ENST00000348801.7:ENST00000478070.2:ENST00000471946.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	123	2	2.4171	2.945665	3.47423	0.00268371	0.00241762	0.0464781	0.0454275
chr7	121087621	121087721	3394633	0	+	0.4	(0.378,0.408]	chr7	317710	106	INTRON	INTRON	CPED1	ENSG00000106034.18	ENST00000310396.10:ENST00000428526.5:ENST00000450913.6:ENST00000520801.5:ENST00000423795.5:ENST00000443817.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	49	2	2.46373	2.945615	3.4275	0.0382831	0.00126053	0.141795	0.03295
chr1	171508661	171508761	253446	0	+	0.3	(0.28,0.32]	chr1	30096	226	INTRON	INTRON	PRRC2C	ENSG00000117523.18	ENST00000647382.2:ENST00000367742.7:ENST00000476522.5:ENST00000338920.8:ENST00000467601.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	43	2	1.85772	2.9455850000000003	4.03345	0.0704058	0.0300199	0.184298	0.142135
chr10	60780502	60780602	4435788	0	+	0.3	(0.28,0.32]	chr10	409169	3	SS5_PROX	SS5_PROX:INTRON	CDK1	ENSG00000170312.17	ENST00000519078.6:ENST00000475504.6:ENST00000316629.8:ENST00000519760.1:ENST00000395284.8:ENST00000448257.6:ENST00000373809.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	43	2	1.85772	2.9455850000000003	4.03345	0.0704058	0.0300199	0.184298	0.142135
chr20	62932696	62932796	7362518	0	-	0.25	[0,0.28]	chr20	751216	35	INTRON	INTRON	DIDO1	ENSG00000101191.17	ENST00000266070.8:ENST00000370371.8	protein_coding	protein_coding	protein_coding	protein_coding	7	151	2	1.62418	2.945545	4.26691	0.0298451	4.66064e-5	0.129138	0.00555772
chr5	138519666	138519766	2732433	0	-	0.3	(0.28,0.32]	chr5	257409	4	INTRON	INTRON	ETF1	ENSG00000120705.13	ENST00000360541.10:ENST00000499810.6:ENST00000503014.5:ENST00000512198.1:ENST00000572514.5:ENST00000507939.5:ENST00000514005.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	38	2	1.76293	2.9455	4.12807	0.0766478	0.0338135	0.196164	0.146709
chr17	65042501	65042601	6818279	0	-	0.48	(0.476,0.515]	chr17	674129	238	INTRON	INTRON	GNA13	ENSG00000120063.10	ENST00000439174.7:ENST00000541118.1	protein_coding	protein_coding	protein_coding	protein_coding	2	46	2	2.69967	2.94543	3.19119	0.0195838	0.00325748	0.109483	0.0524329
chr11	119000360	119000454	4873996	0	+	0.351064	(0.35,0.378]	chr11	455378	9	INTRON	INTRON	CENATAC	ENSG00000186166.9	ENST00000334418.6:ENST00000524670.5:ENST00000526463.5:ENST00000532132.5:ENST00000580556.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	50	2	2.78212	2.945375	3.10863	0.0168532	0.00470896	0.103549	0.0631419
chr15	80060347	80060423	6071038	0	+	0.289474	(0.28,0.32]	chr15	578300	1	SS5_PROX	SS5_PROX:INTRON	ZFAND6	ENSG00000086666.19	ENST00000613266.4:ENST00000561060.5:ENST00000559157.5:ENST00000261749.11:ENST00000561012.5:ENST00000564367.5:ENST00000558494.5:ENST00000618205.4	protein_coding	protein_coding	protein_coding	protein_coding	6	119	2	2.05785	2.94534	3.83283	0.00560246	5.10252e-4	0.0678837	0.020816
chr17	27105111	27105211	6579876	0	+	0.48	(0.476,0.515]	chr17	639586	83	INTRON	INTRON	ENSG00000285822	ENSG00000285822.1	ENST00000649401.1	lncRNA	lncRNA	lncRNA	lncRNA	2	46	2	2.9435	2.94521	2.94692	0.00929849	0.00794331	0.0817766	0.0797304
chr17	82446990	82447088	6853241	0	-	0.479592	(0.476,0.515]	chr17	679289	4	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CYBC1	ENSG00000178927.18	ENST00000306645.10:ENST00000342572.12:ENST00000434650.6:ENST00000584024.5:ENST00000437807.6:ENST00000585044.5:ENST00000578895.5:ENST00000583617.5:ENST00000582725.5:ENST00000577436.5:ENST00000585064.5:ENST00000577732.5:ENST00000578919.5:ENST00000580560.5:ENST00000581196.5:ENST00000584503.5:ENST00000585080.5:ENST00000577888.5:ENST00000579444.5:ENST00000577707.5:ENST00000578913.5:ENST00000584891.5:ENST00000584408.5:ENST00000577696.5:ENST00000577471.5:ENST00000577834.5:ENST00000578941.5:ENST00000578064.1:ENST00000582395.5:ENST00000582608.5:ENST00000583359.1:ENST00000582545.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	46	2	2.9435	2.94521	2.94692	0.00929849	0.00794331	0.0817766	0.0797304
chr6	88853328	88853428	3158029	0	-	0.5	(0.476,0.515]	chr6	294210	3	SS5_PROX	SS5_PROX:INTRON	RNGTT	ENSG00000111880.16	ENST00000369485.9:ENST00000369475.7:ENST00000627296.1:ENST00000538899.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	46	2	2.9435	2.94521	2.94692	0.00929849	0.00794331	0.0817766	0.0797304
chr12	120452557	120452656	5235341	0	+	0.484848	(0.476,0.515]	chr12	496783	54	INTRON	INTRON	GATC	ENSG00000257218.6	ENST00000551765.6:ENST00000548171.1:ENST00000229384.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	63	2	2.32001	2.9452049999999996	3.5704	0.0136217	8.75056e-4	0.101682	0.0270926
chr2	61274364	61274464	1128536	0	-	0.28	[0,0.28]	chr2	121280	78	INTRON	INTRON	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000472706.5:ENST00000453734.1:ENST00000484179.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	108	2	2.67485	2.9451400000000003	3.21543	0.00629013	0.00169125	0.0687434	0.0381936
chr5	6755544	6755644	2316276	0	+	0.44	(0.408,0.44]	chr5	224338	7	UTR3	UTR3:EXON_MRNA	TENT4A	ENSG00000112941.14	ENST00000230859.8	protein_coding	protein_coding	protein_coding	protein_coding	7	129	2	2.38209	2.94514	3.50819	0.0013549	5.7683e-5	0.0336321	0.00620725
chr21	39304863	39304963	7465455	0	-	0.29	(0.28,0.32]	chr21	760568	59	INTRON	INTRON	BRWD1	ENSG00000185658.14	ENST00000333229.6:ENST00000342449.8:ENST00000380800.7:ENST00000341322.4:ENST00000470108.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	152	2	1.86858	2.9451	4.02162	0.0214814	4.96956e-6	0.114341	0.00151644
chr16	2672171	2672270	6432559	0	-	0.484848	(0.476,0.515]	chr16	619012	52	EXON_LNCRNA	EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ERVK13-1	ENSG00000260565.8	ENST00000564340.2:ENST00000663379.1:ENST00000661984.1:ENST00000658381.1:ENST00000662175.1:ENST00000665388.1:ENST00000568395.2:ENST00000656684.1:ENST00000663519.1:ENST00000669589.1:ENST00000660569.1:ENST00000667008.1:ENST00000661380.1:ENST00000654702.1:ENST00000662929.1:ENST00000670385.1:ENST00000654949.1:ENST00000657531.1:ENST00000661849.1:ENST00000658483.1:ENST00000666404.1:ENST00000659184.1:ENST00000659274.1:ENST00000668411.1:ENST00000669151.1:ENST00000657811.1:ENST00000671507.1:ENST00000668680.1:ENST00000666266.1:ENST00000671475.1:ENST00000665778.1:ENST00000653956.1:ENST00000569465.1:ENST00000667109.1:ENST00000562807.6:ENST00000665678.1:ENST00000662943.1:ENST00000657292.1:ENST00000685469.1:ENST00000566343.6:ENST00000671018.1	lncRNA	lncRNA	lncRNA	lncRNA	3	63	2	2.69886	2.9450250000000002	3.19119	0.00385209	0.00325748	0.0542786	0.0524329
chr5	105208798	105208898	2694514	0	-	0.37	(0.35,0.378]	chr5	254244	1995	INTRON	INTRON	ENSG00000251574:ENSG00000253584	ENSG00000251574.8:ENSG00000253584.1	ENST00000503650.1:ENST00000522464.1	lncRNA	lncRNA	lncRNA	lncRNA	4	92	2	2.48623	2.944985	3.40374	0.00938784	1.20032e-4	0.0817766	0.00938389
chr19	3433117	3433217	7000294	0	+	0.52	(0.515,0.57]	chr19	694184	2	SS3_PROX	SS3_PROX:INTRON	NFIC	ENSG00000141905.19	ENST00000641145.1:ENST00000589123.5:ENST00000395111.7:ENST00000586919.5:ENST00000341919.7:ENST00000443272.3:ENST00000590282.5	protein_coding	protein_coding	protein_coding	protein_coding	2	40	2	2.90311	2.94494	2.98677	0.0094233	0.00632549	0.0817766	0.0722266
chr9	5702686	5702786	4098041	0	+	0.53	(0.515,0.57]	chr9	373384	123	INTRON	INTRON	RIC1	ENSG00000107036.12	ENST00000251879.10:ENST00000414202.7:ENST00000418622.7:ENST00000545641.5	protein_coding	protein_coding	protein_coding	protein_coding	2	40	2	2.90311	2.94494	2.98677	0.0094233	0.00632549	0.0817766	0.0722266
chr22	50519848	50519944	7545364	0	+	0.510417	(0.476,0.515]	chr22	771189	2	SS5_PROX	SS5_PROX:INTRON	NCAPH2	ENSG00000025770.19	ENST00000420993.7:ENST00000395701.7:ENST00000523045.5:ENST00000299821.15:ENST00000520297.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	126	2	2.32197	2.944905	3.56784	0.00133705	6.51869e-5	0.0335955	0.00715707
chrX	113855799	113855899	7866597	0	-	0.47	(0.44,0.476]	chrX	801544	2396	EXON_LNCRNA	EXON_LNCRNA:INTRON	XACT	ENSG00000241743.4	ENST00000468762.3:ENST00000674361.1	lncRNA	lncRNA	lncRNA	lncRNA	4	77	2	2.47804	2.9449	3.41176	0.00325838	0.00130987	0.0508595	0.0333932
chr13	28275248	28275347	5462212	0	+	0.383838	(0.378,0.408]	chr13	523313	28	INTRON	INTRON	PAN3	ENSG00000152520.14	ENST00000380958.8:ENST00000399613.1	protein_coding	protein_coding	protein_coding	protein_coding	2	49	2	2.78705	2.944895	3.10274	0.0135539	0.00586642	0.101363	0.0668095
chr3	32721613	32721711	1393485	0	+	0.397959	(0.378,0.408]	chr3	145894	10	INTRON	INTRON	CNOT10	ENSG00000182973.20	ENST00000331889.10:ENST00000328834.10:ENST00000435630.5:ENST00000454516.7:ENST00000416457.5:ENST00000455381.5:ENST00000463697.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	49	2	2.78705	2.944895	3.10274	0.0135539	0.00586642	0.101363	0.0668095
chr16	47616160	47616258	6344867	0	+	0.336735	(0.32,0.35]	chr16	608945	49	INTRON	INTRON	PHKB	ENSG00000102893.17	ENST00000566044.5:ENST00000299167.12:ENST00000696809.1:ENST00000323584.10:ENST00000568439.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	38	2	1.61669	2.944845	4.273	0.0578816	0.0368357	0.188651	0.138959
chr16	88626880	88626970	6418842	0	+	0.522222	(0.515,0.57]	chr16	615850	3	INTRON	INTRON	ZC3H18	ENSG00000158545.16	ENST00000301011.10:ENST00000452588.6:ENST00000564341.1	protein_coding	protein_coding	protein_coding	protein_coding	2	45	2	2.35125	2.944845	3.53844	0.0436431	7.92613e-4	0.162255	0.0259663
chr22	40066877	40066977	7517068	0	+	0.35	(0.32,0.35]	chr22	768084	209	INTRON	INTRON	TNRC6B	ENSG00000100354.21	ENST00000301923.13:ENST00000441751.5:ENST00000402203.5	protein_coding	protein_coding	protein_coding	protein_coding	3	38	2	1.61669	2.944845	4.273	0.0578816	0.0368357	0.188651	0.138959
chr4	126676371	126676471	2237473	0	-	0.24	[0,0.28]	chr4	219023	2109	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	8	161	2	2.0256	2.9448049999999997	3.86401	0.0038935	6.37628e-4	0.0568626	0.0231685
chr6	32979465	32979555	2846538	0	+	0.322222	(0.32,0.35]	chr6	268488	4	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	BRD2	ENSG00000204256.14	ENST00000374825.9:ENST00000469132.2:ENST00000679179.1:ENST00000678778.1:ENST00000449085.4:ENST00000677331.1:ENST00000678250.1:ENST00000677085.1:ENST00000374831.8:ENST00000482914.5:ENST00000679099.1:ENST00000464592.6:ENST00000395287.5:ENST00000449025.5:ENST00000463639.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	241	2	2.57937	2.94477	3.31017	1.55092e-4	3.36262e-5	0.0106835	0.00488303
chr5	53961216	53961316	2617416	0	-	0.47	(0.44,0.476]	chr5	248835	492	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	62	2	2.42996	2.944765	3.45957	0.0104804	0.00106385	0.0855777	0.0300133
chr3	160402575	160402675	1544623	0	+	0.28	[0,0.28]	chr3	160673	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SMC4	ENSG00000113810.16	ENST00000497311.5:ENST00000465903.5:ENST00000485645.5:ENST00000472282.5:ENST00000472991.5:ENST00000357388.8:ENST00000469762.5:ENST00000468653.5:ENST00000467468.5:ENST00000469858.5:ENST00000489573.5:ENST00000462787.5:ENST00000485867.5:ENST00000490207.5:ENST00000344722.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	149	2	2.53226	2.944605	3.35695	0.00306159	5.51279e-4	0.0509893	0.0216014
chr4	1972773	1972872	1911622	0	+	0.414141	(0.408,0.44]	chr4	191852	113	INTRON	INTRON	NSD2	ENSG00000109685.19	ENST00000508803.6:ENST00000382891.9:ENST00000353275.9:ENST00000382892.6:ENST00000382895.7:ENST00000312087.10:ENST00000677559.1:ENST00000482415.6:ENST00000382888.3:ENST00000679039.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	62	2	2.60048	2.9445	3.28852	0.00484324	0.00287185	0.0640618	0.0474836
chr7	156890969	156891069	3687996	0	-	0.51	(0.476,0.515]	chr7	342096	537	INTRON	INTRON	LMBR1	ENSG00000105983.23	ENST00000353442.10:ENST00000415428.5:ENST00000454132.5:ENST00000434503.5:ENST00000430278.5:ENST00000434278.5:ENST00000444719.5:ENST00000461469.5:ENST00000414218.1:ENST00000434453.1:ENST00000498034.5:ENST00000433968.5:ENST00000485985.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	103	2	1.73024	2.94447	4.1587	0.0127077	5.17145e-5	0.0985982	0.00625679
chr11	67430579	67430677	4815106	0	+	0.520408	(0.515,0.57]	chr11	448443	11	EXON_MRNA	EXON_MRNA:INTRON	RPS6KB2	ENSG00000175634.15	ENST00000530623.5:ENST00000556575.5:ENST00000312629.10:ENST00000524814.5:ENST00000524934.5:ENST00000420069.3:ENST00000528964.5:ENST00000525088.5:ENST00000525996.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	56	2	2.1885	2.9444	3.7003	0.0202537	3.73715e-4	0.121364	0.0179087
chr21	36822373	36822473	7460117	0	-	0.47	(0.44,0.476]	chr21	760114	547	INTRON	INTRON	HLCS	ENSG00000159267.17	ENST00000674895.3:ENST00000336648.8:ENST00000612277.4:ENST00000399120.5:ENST00000675307.1:ENST00000675057.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	46	2	2.80275	2.94433	3.08591	0.0146513	0.00481262	0.0982604	0.0638089
chr8	100946880	100946979	4005918	0	-	0.212121	[0,0.28]	chr8	366668	120	INTRON	INTRON	YWHAZ	ENSG00000164924.18	ENST00000395958.6:ENST00000395957.6:ENST00000457309.2:ENST00000395956.7:ENST00000353245.7:ENST00000521309.5:ENST00000522542.5:ENST00000395953.6:ENST00000395948.6:ENST00000395951.7:ENST00000419477.6:ENST00000521607.5:ENST00000480304.5:ENST00000518736.5:ENST00000517727.5:ENST00000521328.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	136	2	2.00464	2.9443	3.88396	0.00797197	5.89515e-4	0.0798772	0.0225024
chr16	18785579	18785673	6456629	0	-	0.468085	(0.44,0.476]	chr16	622513	9	EXON_LNCRNA	EXON_LNCRNA:INTRON	RPS15A	ENSG00000134419.15	ENST00000322989.8:ENST00000572008.5:ENST00000563390.5:ENST00000574723.5:ENST00000576008.5:ENST00000562935.5:ENST00000569365.6:ENST00000576436.5:ENST00000575669.1:ENST00000565420.5:ENST00000569083.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	39	2	1.66462	2.944275	4.22393	0.0520247	0.0162322	0.159508	0.109464
chr17	60285929	60286029	6804807	0	-	0.45	(0.44,0.476]	chr17	672336	141	INTRON	INTRON	USP32	ENSG00000170832.13	ENST00000300896.9:ENST00000590133.5:ENST00000589335.5:ENST00000393003.7	protein_coding	protein_coding	protein_coding	protein_coding	5	89	2	2.33785	2.9442649999999997	3.55068	0.00284182	7.06861e-4	0.0473478	0.0241881
chr1	77954357	77954456	494262	0	-	0.343434	(0.32,0.35]	chr1	58487	47	INTRON	INTRON	FUBP1	ENSG00000162613.17	ENST00000370768.7:ENST00000492724.1:ENST00000492405.5:ENST00000294623.8:ENST00000370767.5:ENST00000487684.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	11	153	2	1.64304	2.94421	4.24538	0.00853481	6.04054e-5	0.0835782	0.00682472
chr1	65287586	65287686	135869	0	+	0.45	(0.44,0.476]	chr1	15346	223	INTRON	INTRON	DNAJC6	ENSG00000116675.16	ENST00000463018.5:ENST00000494710.6:ENST00000263441.11:ENST00000395325.7:ENST00000483402.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	114	2	2.47437	2.9440999999999997	3.41383	0.00117531	1.54313e-4	0.0316592	0.0113252
chr10	48307507	48307594	4430995	0	+	0.448276	(0.44,0.476]	chr10	408556	4	SS5_PROX	SS5_PROX:INTRON	MAPK8	ENSG00000107643.17	ENST00000395611.7:ENST00000432379.5:ENST00000374189.6:ENST00000429041.6:ENST00000374179.8:ENST00000426557.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	153	2	2.63819	2.94405	3.24991	3.65643e-4	4.57551e-5	0.0177538	0.00551647
chr20	47238660	47238757	7348317	0	-	0.474227	(0.44,0.476]	chr20	749266	15	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000467200.6:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000468376.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	189	2	2.55805	2.943815	3.32958	3.30551e-4	7.62046e-6	0.0168442	0.00197283
chr16	10437008	10437107	6286793	0	+	0.474747	(0.44,0.476]	chr16	601993	30	INTRON	INTRON	ATF7IP2	ENSG00000166669.14	ENST00000396559.5:ENST00000396560.6:ENST00000543967.5:ENST00000562102.6:ENST00000535850.5:ENST00000568027.5:ENST00000324570.9:ENST00000356427.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	99	2	2.85407	2.943785	3.0335	9.65686e-4	4.30929e-4	0.0282401	0.018618
chr2	107732645	107732745	1205876	0	-	0.36	(0.35,0.378]	chr2	128532	150	INTRON	INTRON	LINC01885:ENSG00000286769	ENSG00000237880.2:ENSG00000286769.1	ENST00000654481.1:ENST00000669817.1	lncRNA	lncRNA	lncRNA	lncRNA	12	245	2	2.6191	2.9436	3.2681	1.46736e-4	1.42047e-5	0.0110899	0.00281492
chr15	51512743	51512843	6175323	0	-	0.48	(0.476,0.515]	chr15	588695	51	INTRON	INTRON	DMXL2	ENSG00000104093.14	ENST00000251076.9:ENST00000543779.6:ENST00000560891.6:ENST00000449909.7	protein_coding	protein_coding	protein_coding	protein_coding	4	87	2	2.31726	2.94339	3.56952	0.015077	4.10985e-5	0.0994339	0.00519615
chr5	140658236	140658336	2504519	0	+	0.39	(0.378,0.408]	chr5	239485	1	SS3_PROX	SS3_PROX:INTRON	IK	ENSG00000113141.19	ENST00000417647.7	protein_coding	protein_coding	protein_coding	protein_coding	3	36	2	1.78011	2.94336	4.10661	0.0399023	0.0356367	0.151629	0.143072
chr15	82735820	82735920	6248632	0	-	0.47	(0.44,0.476]	chr15	596313	45	INTRON	INTRON	ACTG1P17	ENSG00000259315.1	ENST00000560958.1:ENST00000561222.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	2	48	2	2.66433	2.943125	3.22192	0.0194358	0.00360821	0.119831	0.0533855
chr1	235487111	235487208	664282	0	-	0.453608	(0.44,0.476]	chr1	78624	20	INTRON	INTRON	B3GALNT2	ENSG00000162885.14	ENST00000366600.8:ENST00000675193.1:ENST00000676288.1:ENST00000675555.1:ENST00000612859.4:ENST00000313984.3:ENST00000494378.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	46	2	2.74063	2.94311	3.14559	0.0176095	0.00384923	0.105143	0.0562562
chr17	3820848	3820948	6707944	0	-	0.45	(0.44,0.476]	chr17	656989	2	SS5_PROX	SS5_PROX:INTRON	NCBP3	ENSG00000074356.17	ENST00000389005.6:ENST00000574911.5:ENST00000575815.5:ENST00000574379.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	46	2	2.74063	2.94311	3.14559	0.0176095	0.00384923	0.105143	0.0562562
chr21	42869965	42870065	7467814	0	-	0.46	(0.44,0.476]	chr21	760973	60	INTRON	INTRON	WDR4	ENSG00000160193.12	ENST00000330317.6:ENST00000476326.5:ENST00000398208.3:ENST00000492742.5:ENST00000479429.5:ENST00000463902.5:ENST00000470658.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	46	2	2.74063	2.94311	3.14559	0.0176095	0.00384923	0.105143	0.0562562
chr3	196480485	196480584	1899786	0	-	0.363636	(0.35,0.378]	chr3	190242	48	INTRON	INTRON	RNF168	ENSG00000163961.4	ENST00000318037.3:ENST00000437070.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	67	2	2.80179	2.94305	3.08431	0.0065853	0.00223906	0.0701901	0.0435144
chr19	21762115	21762214	7159251	0	-	0.414141	(0.408,0.44]	chr19	723737	82	INTRON	INTRON	ZNF100	ENSG00000197020.12	ENST00000358296.11:ENST00000598026.1:ENST00000596452.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	102	2	2.23023	2.943035	3.65584	0.0087201	2.38988e-5	0.0788605	0.00383194
chr8	47935476	47935558	3945506	0	-	0.256098	[0,0.28]	chr8	361923	4	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7	protein_coding	protein_coding	protein_coding	protein_coding	3	90	2	2.41169	2.9429600000000002	3.47423	0.0122872	0.00268371	0.0970106	0.0464781
chr1	28579357	28579444	409396	0	-	0.321839	(0.32,0.35]	chr1	49294	5	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	SNHG12	ENSG00000197989.15	ENST00000648127.1:ENST00000470977.6:ENST00000531126.7:ENST00000461832.2:ENST00000481368.6:ENST00000692541.1:ENST00000693199.1:ENST00000461448.6:ENST00000481220.6:ENST00000464612.5:ENST00000474814.1:ENST00000475441.6:ENST00000488745.5:ENST00000483436.5:ENST00000650259.1:ENST00000650239.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	10	157	2	1.82542	2.94293	4.06044	0.00639365	7.3644e-5	0.0694378	0.00714826
chr10	68418336	68418434	4639215	0	-	0.489796	(0.476,0.515]	chr10	426640	11	INTRON	INTRON	DNA2	ENSG00000138346.15	ENST00000358410.8:ENST00000551118.6:ENST00000399179.6:ENST00000399180.3:ENST00000440722.2:ENST00000550545.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	129	2	2.52779	2.94293	3.35807	6.23394e-4	1.37324e-4	0.0229194	0.0100829
chr17	61840333	61840433	6808702	0	-	0.3	(0.28,0.32]	chr17	672605	312	INTRON	INTRON	BRIP1	ENSG00000136492.10	ENST00000259008.7:ENST00000682755.1:ENST00000682453.1:ENST00000683039.1:ENST00000682989.1:ENST00000682589.1:ENST00000683235.1:ENST00000682477.1:ENST00000684584.1:ENST00000577598.5:ENST00000682066.1:ENST00000584322.2:ENST00000683381.1:ENST00000579028.2:ENST00000682611.1:ENST00000683692.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	94	2	2.25298	2.94287	3.63276	0.00791652	0.00114475	0.0797304	0.0308149
chr22	19482827	19482927	7476863	0	+	0.44	(0.408,0.44]	chr22	762399	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	CDC45	ENSG00000093009.11	ENST00000407835.6:ENST00000491520.5:ENST00000437685.6:ENST00000483431.5:ENST00000438587.6:ENST00000672837.1:ENST00000263201.7:ENST00000404724.7:ENST00000487669.5:ENST00000428937.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	45	2	1.44993	2.9428650000000003	4.4358	0.0638951	0.00893097	0.177824	0.0849778
chr16	2979309	2979390	6432870	0	-	0.308642	(0.28,0.32]	chr16	619100	3	SS5_PROX	SS5_PROX:INTRON	PKMYT1	ENSG00000127564.17	ENST00000431515.6:ENST00000440027.6:ENST00000262300.13:ENST00000574385.5:ENST00000574730.5:ENST00000573944.5:ENST00000576268.1:ENST00000574415.5:ENST00000575632.5:ENST00000572059.1:ENST00000572619.1	protein_coding	protein_coding	protein_coding	protein_coding	6	148	2	2.56516	2.9428400000000003	3.32052	0.00163608	2.48191e-4	0.0369207	0.0139607
chr20	35735925	35736012	7336491	0	-	0.402299	(0.378,0.408]	chr20	747487	5	INTRON	INTRON	RBM39	ENSG00000131051.24	ENST00000253363.11:ENST00000639702.1:ENST00000656873.1:ENST00000463004.5:ENST00000361162.10:ENST00000461283.5:ENST00000403542.6:ENST00000338163.10:ENST00000528062.7:ENST00000429968.5:ENST00000444878.5:ENST00000665058.1:ENST00000374038.7:ENST00000412738.5:ENST00000434927.5:ENST00000425184.5:ENST00000481037.5:ENST00000455343.5:ENST00000416108.5:ENST00000426951.5:ENST00000477334.1:ENST00000442447.5:ENST00000449489.5:ENST00000433027.5:ENST00000487604.1:ENST00000453310.5:ENST00000498280.1:ENST00000416529.5:ENST00000397370.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	18	300	2	2.4847	2.9427250000000003	3.40075	2.95225e-5	1.24768e-5	0.00431726	0.00280918
chr5	179714510	179714608	2560855	0	+	0.459184	(0.44,0.476]	chr5	244918	41	INTRON	INTRON	CANX	ENSG00000127022.16	ENST00000681674.1:ENST00000681712.1:ENST00000681903.1:ENST00000680406.1:ENST00000502296.6:ENST00000504734.5:ENST00000452673.6:ENST00000679719.1:ENST00000679523.1:ENST00000679395.1:ENST00000681504.1:ENST00000679642.1:ENST00000681894.1:ENST00000680504.1:ENST00000681265.1:ENST00000680894.1:ENST00000680812.1:ENST00000680614.1:ENST00000680985.1:ENST00000680837.1:ENST00000680827.1:ENST00000681576.1:ENST00000680984.1:ENST00000680042.1:ENST00000681762.1:ENST00000681476.1:ENST00000681072.1:ENST00000247461.9:ENST00000513246.6:ENST00000680618.1:ENST00000502673.6:ENST00000680092.1:ENST00000506654.6:ENST00000514032.5:ENST00000681733.1:ENST00000679471.1:ENST00000679527.1:ENST00000680006.1:ENST00000681398.1:ENST00000681431.1:ENST00000680013.1:ENST00000681076.1:ENST00000681168.1:ENST00000509563.2:ENST00000681342.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	62	2	2.29126	2.9427149999999997	3.59417	0.0165638	5.78231e-4	0.102621	0.0218253
chr1	19129274	19129374	385942	0	-	0.38	(0.378,0.408]	chr1	45833	2	SS3_PROX	SS3_PROX:INTRON	UBR4	ENSG00000127481.15	ENST00000375254.8:ENST00000425413.5:ENST00000417040.1	protein_coding	protein_coding	protein_coding	protein_coding	2	29	2	1.89621	2.94244	3.98867	0.0507	0.0488044	0.173377	0.156383
chr15	82396009	82396108	6075942	0	+	0.393939	(0.378,0.408]	chr15	578731	37	INTRON	INTRON	UBE2Q2P2	ENSG00000259429.5	ENST00000618775.4:ENST00000613592.4	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	2	29	2	1.89621	2.94244	3.98867	0.0507	0.0488044	0.173377	0.156383
chr8	27824404	27824504	3927197	0	-	0.24	[0,0.28]	chr8	359598	8	INTRON	INTRON	PBK	ENSG00000168078.10	ENST00000301905.9:ENST00000522944.5:ENST00000524266.1:ENST00000521226.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	66	2	2.54624	2.94239	3.33854	0.0388449	0.00278022	0.143072	0.0488412
chr7	100323435	100323533	3586643	0	-	0.336735	(0.32,0.35]	chr7	334335	20	INTRON	INTRON	PMS2P1	ENSG00000078319.11	ENST00000685724.1:ENST00000692351.1:ENST00000685541.1:ENST00000676200.2:ENST00000675162.2:ENST00000686838.1:ENST00000676241.1:ENST00000674981.1:ENST00000691424.1:ENST00000689817.1:ENST00000675610.2:ENST00000685901.1:ENST00000687177.1:ENST00000686797.1:ENST00000686203.1:ENST00000687616.1:ENST00000689267.1:ENST00000691905.1:ENST00000688544.1:ENST00000692261.1:ENST00000693192.1:ENST00000693215.1:ENST00000691707.1:ENST00000691275.1:ENST00000692687.1:ENST00000689609.1:ENST00000685852.1:ENST00000691910.1:ENST00000676204.1:ENST00000689000.1:ENST00000693042.1:ENST00000690446.1:ENST00000676274.2:ENST00000685473.1:ENST00000693010.1:ENST00000687801.1:ENST00000689447.1:ENST00000674842.2:ENST00000688104.1:ENST00000686890.1:ENST00000675639.2:ENST00000693302.1:ENST00000676155.2:ENST00000691428.1:ENST00000691046.1:ENST00000691816.1:ENST00000685670.1:ENST00000693490.1:ENST00000685700.1:ENST00000692947.1:ENST00000689907.1:ENST00000691110.1:ENST00000685499.1:ENST00000689019.1:ENST00000689719.1:ENST00000690988.1:ENST00000676256.1:ENST00000687713.1:ENST00000691247.1:ENST00000685805.1	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript	3	72	2	2.38582	2.942255	3.49869	0.0138529	0.00108004	0.0953077	0.0300133
chr15	50570849	50570947	6172080	0	-	0.265306	[0,0.28]	chr15	588197	3	INTRON	INTRON	TRPM7	ENSG00000092439.16	ENST00000561267.5:ENST00000646667.1:ENST00000560955.5:ENST00000561443.5:ENST00000560516.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	66	2	2.90797	2.9420650000000004	2.97616	0.0128425	0.0118539	0.0962115	0.0926667
chr8	53982564	53982664	3952896	0	-	0.38	(0.378,0.408]	chr8	362520	30	INTRON	INTRON	TCEA1	ENSG00000187735.15	ENST00000396401.7:ENST00000521604.7:ENST00000521086.6:ENST00000522635.5:ENST00000522397.5:ENST00000640382.1:ENST00000640041.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	67	2	2.72993	2.94204	3.15415	0.0188736	4.11608e-4	0.108861	0.0181365
chr17	57338323	57338423	6633572	0	+	0.48	(0.476,0.515]	chr17	648024	276	INTRON	INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000581776.5:ENST00000674961.1:ENST00000582453.5:ENST00000675656.1:ENST00000322684.7:ENST00000579590.5:ENST00000676073.1:ENST00000675822.1:ENST00000442934.6:ENST00000579180.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	47	2	2.73205	2.9420349999999997	3.15202	0.0159328	0.00455841	0.109464	0.0595107
chr8	140998786	140998886	4080054	0	-	0.39	(0.378,0.408]	chr8	370590	143	INTRON	INTRON	PTK2	ENSG00000169398.20	ENST00000696786.1:ENST00000522684.5:ENST00000395218.3:ENST00000521059.5:ENST00000519993.5:ENST00000340930.7:ENST00000524357.5:ENST00000521791.5:ENST00000523067.5:ENST00000520828.5:ENST00000519881.5:ENST00000520892.5:ENST00000517453.5:ENST00000520045.5:ENST00000521332.5:ENST00000524040.5:ENST00000523679.1:ENST00000524257.5:ENST00000523797.1:ENST00000519635.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	103	2	2.81806	2.9420200000000003	3.06598	9.11854e-4	5.36236e-4	0.0278396	0.0209287
chr5	43542107	43542206	2615309	0	-	0.484848	(0.476,0.515]	chr5	248687	27	INTRON	INTRON	PAIP1	ENSG00000172239.14	ENST00000306846.8:ENST00000436644.6:ENST00000338972.8:ENST00000514514.5:ENST00000504639.5:ENST00000511321.5:ENST00000508537.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	74	2	2.59304	2.94189	3.29074	0.00272563	0.00158794	0.0467523	0.0367961
chr11	87073909	87074009	4843172	0	+	0.53	(0.515,0.57]	chr11	451850	19	INTRON	INTRON	TMEM135	ENSG00000166575.17	ENST00000340353.11:ENST00000529023.5:ENST00000526733.5:ENST00000305494.6:ENST00000532959.5:ENST00000525018.5:ENST00000531800.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	53	2	2.68132	2.94186	3.2024	0.00324198	0.00322022	0.0524329	0.0507087
chr1	86713232	86713332	153227	0	+	0.47	(0.44,0.476]	chr1	16880	79	INTRON	INTRON	SH3GLB1	ENSG00000097033.14	ENST00000616170.4:ENST00000535010.5:ENST00000370558.8:ENST00000482504.1	protein_coding	protein_coding	protein_coding	protein_coding	3	36	2	1.87325	2.941815	4.01038	0.0433743	0.0265709	0.148082	0.134088
chr1	148892087	148892187	214670	0	+	0.53	(0.515,0.57]	chr1	23778	18	INTRON	INTRON	PDE4DIP	ENSG00000178104.20	ENST00000695768.1:ENST00000695767.1:ENST00000695766.1:ENST00000530472.5:ENST00000695794.1:ENST00000524974.5:ENST00000620605.4:ENST00000585156.5:ENST00000695769.1:ENST00000618462.4:ENST00000695795.1:ENST00000617031.4:ENST00000617527.4:ENST00000533259.1:ENST00000619981.4:ENST00000617454.4:ENST00000613995.4:ENST00000621371.4:ENST00000534536.5:ENST00000528129.5:ENST00000369356.8:ENST00000533845.1:ENST00000526445.1:ENST00000369354.7:ENST00000369347.8:ENST00000369349.7:ENST00000369351.7:ENST00000612094.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	64	2	2.57697	2.9418100000000003	3.30665	0.00213226	0.00153959	0.041756	0.0362709
chr5	66079215	66079313	2372407	0	+	0.357143	(0.35,0.378]	chr5	228636	8	UTR3	UTR3:EXON_MRNA	ERBIN	ENSG00000112851.15	ENST00000380943.6:ENST00000380935.5:ENST00000284037.10	protein_coding	protein_coding	protein_coding	protein_coding	4	85	2	2.51829	2.941715	3.36514	0.00313284	0.00173699	0.0499756	0.03851
chr6	57097086	57097184	2878125	0	+	0.306122	(0.28,0.32]	chr6	273232	37	INTRON	INTRON	ZNF451	ENSG00000112200.17	ENST00000515290.5:ENST00000510483.5:ENST00000357489.7:ENST00000370708.8:ENST00000370702.5:ENST00000444273.6:ENST00000370711.9:ENST00000508603.5:ENST00000370706.9:ENST00000491832.6:ENST00000370710.10:ENST00000502749.1:ENST00000504603.1:ENST00000509071.5:ENST00000510989.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	78	2	2.87934	2.9416450000000003	3.00395	0.0101329	0.00189034	0.0850389	0.0402736
chr17	32447843	32447942	6598377	0	+	0.383838	(0.378,0.408]	chr17	641971	4	INTRON	INTRON	PSMD11	ENSG00000108671.11	ENST00000578213.5:ENST00000649012.1:ENST00000457654.6:ENST00000578397.5:ENST00000579451.1:ENST00000261712.8:ENST00000580904.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	120	2	2.92509	2.941485	2.95788	0.00167715	8.6542e-5	0.0370386	0.00783027
chr22	20918445	20918545	7480527	0	+	0.42	(0.408,0.44]	chr22	763089	2	SS5_PROX	SS5_PROX:INTRON	CRKL	ENSG00000099942.13	ENST00000354336.8:ENST00000411769.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	205	2	2.63071	2.9413549999999997	3.252	7.95182e-5	3.59987e-5	0.00801397	0.00481059
chr4	105413628	105413728	2216072	0	-	0.34	(0.32,0.35]	chr4	217232	73	INTRON	INTRON	PPA2	ENSG00000138777.20	ENST00000341695.10:ENST00000348706.9:ENST00000509031.5:ENST00000351450.10:ENST00000354147.7:ENST00000432483.6:ENST00000515567.5:ENST00000503171.5:ENST00000510015.5:ENST00000509426.5:ENST00000508518.5:ENST00000514209.5:ENST00000506815.5:ENST00000457404.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	54	2	2.51061	2.9413549999999997	3.3721	0.0364463	0.00182912	0.138959	0.0396683
chr17	32350131	32350208	6597971	0	+	0.649351	(0.57,1]	chr17	641872	1	UTR5	UTR5:EXON_MRNA	ZNF207	ENSG00000010244.19	ENST00000321233.10:ENST00000394673.6:ENST00000394670.9:ENST00000579634.5:ENST00000580759.5:ENST00000342555.10:ENST00000577908.5:ENST00000394679.9:ENST00000582165.1:ENST00000577324.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	12	113	2	2.31593	2.94127	3.56661	2.19194e-4	4.11938e-7	0.0129762	3.65274e-4
chr19	32612162	32612262	7168964	0	-	0.37	(0.35,0.378]	chr19	724362	38	INTRON	INTRON	ANKRD27	ENSG00000105186.16	ENST00000306065.9	protein_coding	protein_coding	protein_coding	protein_coding	3	69	2	2.66568	2.941225	3.21677	0.00496487	0.00313804	0.0615009	0.0514466
chr6	140873604	140873704	3240885	0	-	0.54	(0.515,0.57]	chr6	301060	74	INTRON	INTRON	ENSG00000234147	ENSG00000234147.3	ENST00000650553.2:ENST00000692940.1:ENST00000683641.1:ENST00000682196.1:ENST00000684320.1:ENST00000683889.1:ENST00000683062.1:ENST00000682608.1:ENST00000455011.2:ENST00000682812.1:ENST00000683340.1:ENST00000683841.1:ENST00000683589.1:ENST00000684268.1:ENST00000683480.1	lncRNA	lncRNA	lncRNA	lncRNA	5	74	2	2.16301	2.9412149999999997	3.71942	0.00510122	2.61221e-4	0.0626075	0.014326
chr3	172162459	172162559	1560779	0	+	0.36	(0.35,0.378]	chr3	161551	135	INTRON	INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000421757.5:ENST00000469491.5:ENST00000336824.8:ENST00000423424.5:ENST00000416957.5:ENST00000478016.1:ENST00000443501.1:ENST00000476794.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	50	2	2.66547	2.9411199999999997	3.21677	0.0233639	0.00313804	0.118323	0.0514466
chr5	54060865	54060964	2618414	0	-	0.353535	(0.35,0.378]	chr5	248837	127	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	50	2	2.66547	2.9411199999999997	3.21677	0.0233639	0.00313804	0.118323	0.0514466
chr17	17230528	17230623	6736005	0	-	0.378947	(0.378,0.408]	chr17	660923	12	INTRON	INTRON	FLCN	ENSG00000154803.13	ENST00000285071.9:ENST00000389169.9:ENST00000417064.1:ENST00000389171.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	88	2	2.43657	2.94104	3.44551	0.0106733	8.68398e-5	0.0861859	0.00783027
chr10	45581850	45581950	4607036	0	-	0.36	(0.35,0.378]	chr10	424363	283	INTRON	INTRON	MARCHF8	ENSG00000165406.16	ENST00000319836.7:ENST00000602712.2:ENST00000453980.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	51	2	2.47065	2.94102	3.41139	0.0386172	0.00143263	0.142656	0.0347139
chr2	70220574	70220674	1152175	0	-	0.37	(0.35,0.378]	chr2	123065	32	INTRON	INTRON	C2orf42:TIA1	ENSG00000115998.8:ENSG00000116001.17	ENST00000470096.1:ENST00000415783.6:ENST00000433529.7:ENST00000282574.8:ENST00000445587.5:ENST00000454815.6:ENST00000482876.5:ENST00000477415.5:ENST00000496096.5:ENST00000416149.6:ENST00000474699.1:ENST00000474809.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	51	2	2.47065	2.94102	3.41139	0.0386172	0.00143263	0.142656	0.0347139
chr16	70671913	70672013	6512045	0	-	0.39	(0.378,0.408]	chr16	630830	60	INTRON	INTRON	MTSS2	ENSG00000132613.16	ENST00000338779.11	protein_coding	protein_coding	protein_coding	protein_coding	2	48	2	2.60296	2.941015	3.27907	0.0267851	0.0023379	0.123349	0.0442989
chr8	25443209	25443306	3926192	0	-	0.391753	(0.378,0.408]	chr8	359437	22	INTRON	INTRON	KCTD9	ENSG00000104756.16	ENST00000221200.9:ENST00000519665.5:ENST00000523140.5:ENST00000522493.5:ENST00000518067.5:ENST00000518997.5:ENST00000523294.5:ENST00000521458.5:ENST00000524217.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	48	2	2.60296	2.941015	3.27907	0.0267851	0.0023379	0.123349	0.0442989
chr16	70274130	70274228	6510337	0	-	0.459184	(0.44,0.476]	chr16	630585	18	INTRON	INTRON	AARS1	ENSG00000090861.17	ENST00000674963.1:ENST00000675643.1:ENST00000675917.1:ENST00000674691.1:ENST00000261772.13:ENST00000675569.1:ENST00000676209.1:ENST00000676211.1:ENST00000676040.1:ENST00000675953.1:ENST00000675691.1:ENST00000676004.1:ENST00000675270.1:ENST00000675403.1:ENST00000676212.1:ENST00000675045.1:ENST00000675035.1:ENST00000676168.1:ENST00000674652.1:ENST00000675133.1:ENST00000675120.1:ENST00000674811.1:ENST00000674512.1:ENST00000675853.1:ENST00000565361.3:ENST00000676247.1:ENST00000674848.1:ENST00000674962.1:ENST00000675371.1:ENST00000675986.1:ENST00000674768.1:ENST00000675297.1:ENST00000675751.1:ENST00000564359.6:ENST00000675338.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	105	2	2.29969	2.9409400000000003	3.58219	8.95839e-4	8.57842e-4	0.0273866	0.0267428
chr1	225413145	225413241	645602	0	-	0.5	(0.476,0.515]	chr1	76357	1	INTRON	INTRON	LBR	ENSG00000143815.15	ENST00000272163.9:ENST00000338179.6:ENST00000651341.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	40	2	1.53534	2.9409099999999997	4.34648	0.0476737	0.0193566	0.170116	0.108861
chr13	41373233	41373330	5474855	0	+	0.371134	(0.35,0.378]	chr13	524527	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NAA16	ENSG00000172766.19	ENST00000379406.8:ENST00000463114.5:ENST00000497143.5:ENST00000495148.1:ENST00000477452.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	50	2	2.89003	2.94088	2.99173	0.0122391	0.00713365	0.0910127	0.0756118
chr4	55609379	55609479	2150427	0	-	0.36	(0.35,0.378]	chr4	211628	2	SS3_PROX	SS3_PROX:INTRON	NMU	ENSG00000109255.11	ENST00000511469.5:ENST00000264218.7:ENST00000505262.5:ENST00000507338.1:ENST00000515325.5:ENST00000509371.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	90	2	2.76353	2.94088	3.11823	0.00343059	5.25625e-4	0.0517761	0.0206013
chr6	132769669	132769769	3222521	0	-	0.39	(0.378,0.408]	chr6	299575	4	UTR3	UTR3:EXON_MRNA	SLC18B1	ENSG00000146409.12	ENST00000275227.9:ENST00000647932.1:ENST00000650278.1:ENST00000650136.1:ENST00000650298.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	42	2	1.66594	2.940785	4.21563	0.0320222	0.0315429	0.144995	0.13151
chr2	61514200	61514297	1130978	0	-	0.381443	(0.378,0.408]	chr2	121605	1	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	XPO1	ENSG00000082898.19	ENST00000677110.1:ENST00000676553.1:ENST00000677556.1:ENST00000677814.1:ENST00000676771.1:ENST00000677803.1:ENST00000677239.1:ENST00000678790.1:ENST00000677928.1:ENST00000678182.1:ENST00000677150.1:ENST00000678172.1:ENST00000678360.1:ENST00000678081.1:ENST00000676889.1:ENST00000676783.1:ENST00000679035.1:ENST00000677422.1:ENST00000677417.1:ENST00000677813.1:ENST00000676999.1:ENST00000676667.1:ENST00000678263.1:ENST00000678877.1:ENST00000677933.1:ENST00000680228.1:ENST00000677289.1:ENST00000677190.1:ENST00000401558.7:ENST00000428210.5:ENST00000677290.1:ENST00000677850.1:ENST00000451765.6:ENST00000676789.1:ENST00000678741.1:ENST00000404992.6:ENST00000406957.5:ENST00000443240.5:ENST00000476585.5:ENST00000468259.1:ENST00000420673.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	87	2	2.51733	2.94072	3.36411	0.00808319	1.36472e-4	0.0766625	0.010058
chr11	5611627	5611722	4726515	0	+	0.536842	(0.515,0.57]	chr11	437430	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TRIM6	ENSG00000121236.21	ENST00000278302.9:ENST00000507320.5:ENST00000380107.5:ENST00000380097.8:ENST00000445329.5:ENST00000621176.1:ENST00000481603.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	31	2	1.67758	2.940695	4.20381	0.0471728	0.0189208	0.168737	0.108861
chr11	9250895	9250994	4908929	0	-	0.545455	(0.515,0.57]	chr11	460115	55	INTRON	INTRON	DENND5A	ENSG00000184014.9	ENST00000328194.8:ENST00000681203.1:ENST00000530780.2:ENST00000679999.1:ENST00000680470.1:ENST00000680554.1:ENST00000681425.1:ENST00000679568.1:ENST00000679446.1:ENST00000680294.1:ENST00000680742.1:ENST00000680885.1:ENST00000530044.5:ENST00000526707.5:ENST00000532696.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	31	2	1.67758	2.940695	4.20381	0.0471728	0.0189208	0.168737	0.108861
chr15	72504326	72504425	6059461	0	+	0.525253	(0.515,0.57]	chr15	576858	71	INTRON	INTRON	ARIH1	ENSG00000166233.15	ENST00000379887.9:ENST00000570085.5:ENST00000564062.1:ENST00000567762.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	31	2	1.67758	2.940695	4.20381	0.0471728	0.0189208	0.168737	0.108861
chr1	213193362	213193462	312131	0	+	0.39	(0.378,0.408]	chr1	35957	165	INTRON	INTRON	RPS6KC1	ENSG00000136643.12	ENST00000615329.4:ENST00000543354.5:ENST00000614059.4:ENST00000543470.5:ENST00000366960.8:ENST00000366959.4:ENST00000490299.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	48	2	2.92665	2.94062	2.95459	0.00957623	0.0086017	0.083729	0.0820838
chr2	200980772	200980871	1310968	0	-	0.343434	(0.32,0.35]	chr2	137226	72	UTR3	UTR3:EXON_MRNA	FAM126B	ENSG00000155744.10	ENST00000681958.1:ENST00000418596.7:ENST00000286181.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	72	2	2.42352	2.94062	3.45772	0.0122807	0.00128487	0.091087	0.0333518
chr5	28828342	28828442	2330033	0	+	0.4	(0.378,0.408]	chr5	225135	178	INTRON	INTRON	LINC02109	ENSG00000259786.7	ENST00000658190.1	lncRNA	lncRNA	lncRNA	lncRNA	2	48	2	2.92665	2.94062	2.95459	0.00957623	0.0086017	0.083729	0.0820838
chr5	133960420	133960520	2725637	0	-	0.38	(0.378,0.408]	chr5	256406	4	SS3_PROX	SS3_PROX:INTRON	C5orf15	ENSG00000113583.8	ENST00000231512.5:ENST00000507191.1:ENST00000509913.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	48	2	2.92665	2.94062	2.95459	0.00957623	0.0086017	0.083729	0.0820838
chr5	150020685	150020784	2518865	0	+	0.333333	(0.32,0.35]	chr5	240788	16	INTRON	INTRON	HMGXB3	ENSG00000113716.13	ENST00000613459.4:ENST00000503427.5:ENST00000502717.6	protein_coding	protein_coding	protein_coding	protein_coding	4	86	2	2.56589	2.94061	3.31533	0.00323121	0.00204522	0.0507087	0.041908
chr5	131695525	131695624	2719719	0	-	0.333333	(0.32,0.35]	chr5	255672	160	INTRON	INTRON	FNIP1	ENSG00000217128.13	ENST00000510461.6:ENST00000307954.12:ENST00000307968.11:ENST00000511848.1	protein_coding	protein_coding	protein_coding	protein_coding	5	98	2	2.24224	2.9406049999999997	3.63897	0.00393422	9.34231e-4	0.0572563	0.0280484
chr14	101763470	101763568	5818511	0	+	0.5	(0.476,0.515]	chr14	551813	1	INTRON	INTRON	PPP2R5C	ENSG00000078304.20	ENST00000694906.1:ENST00000422945.6:ENST00000554442.5:ENST00000556068.5:ENST00000556260.6:ENST00000328724.9:ENST00000554504.1:ENST00000553890.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	136	2	2.82251	2.94046	3.05841	6.78359e-4	4.54034e-5	0.023827	0.00547944
chr3	172063123	172063223	1559779	0	+	0.3	(0.28,0.32]	chr3	161527	158	INTRON	INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000421757.5:ENST00000469491.5:ENST00000336824.8:ENST00000423424.5:ENST00000416957.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	58	2	2.57195	2.94044	3.30893	0.0331711	0.00260504	0.133994	0.0470772
chr5	168488052	168488152	2540428	0	+	0.32	(0.28,0.32]	chr5	242442	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	RARS1	ENSG00000113643.9	ENST00000524082.5:ENST00000521329.5:ENST00000231572.8:ENST00000522834.5:ENST00000521939.5:ENST00000520013.5:ENST00000626454.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	58	2	2.57195	2.94044	3.30893	0.0331711	0.00260504	0.133994	0.0470772
chr7	16620093	16620193	3494770	0	-	0.32	(0.28,0.32]	chr7	326324	38	INTRON	INTRON	ANKMY2	ENSG00000106524.9	ENST00000306999.7:ENST00000447802.3:ENST00000628652.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	58	2	2.57195	2.94044	3.30893	0.0331711	0.00260504	0.133994	0.0470772
chr15	95166658	95166757	6108314	0	+	0.535354	(0.515,0.57]	chr15	581758	59	INTRON	INTRON	ENSG00000277654	ENSG00000277654.6	ENST00000612877.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	4	66	2	2.50953	2.94039	3.37125	0.0023952	0.00136343	0.0440612	0.0339121
chr7	97140306	97140404	3357186	0	+	0.367347	(0.35,0.378]	chr7	313212	35	INTRON	INTRON	SDHAF3	ENSG00000196636.8	ENST00000432641.3:ENST00000489852.1:ENST00000360382.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	51	2	2.79643	2.9403699999999997	3.08431	0.013543	0.0065853	0.101363	0.0701901
chr6	149726083	149726181	3246759	0	-	0.469388	(0.44,0.476]	chr6	301666	19	UTR3	UTR3:EXON_MRNA	NUP43	ENSG00000120253.14	ENST00000340413.7	protein_coding	protein_coding	protein_coding	protein_coding	5	99	2	2.73545	2.9402850000000003	3.14512	7.908e-4	5.78837e-4	0.0258324	0.0223209
chr9	130707189	130707288	4213852	0	+	0.454545	(0.44,0.476]	chr9	386421	5	UTR3	UTR3:EXON_MRNA	EXOSC2	ENSG00000130713.17	ENST00000691284.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	2	32	2	1.9039	2.94008	3.97626	0.0501498	0.0300538	0.156383	0.142135
chr3	49784869	49784969	1694867	0	-	0.48	(0.476,0.515]	chr3	173818	361	INTRON	INTRON	IP6K1	ENSG00000176095.12	ENST00000321599.9:ENST00000395238.5:ENST00000613416.4:ENST00000468463.5:ENST00000460540.1:ENST00000498149.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	74	2	2.13573	2.94003	3.74433	0.0119549	2.85053e-4	0.0899583	0.0150568
chr10	69187466	69187541	4445141	0	+	0.493333	(0.476,0.515]	chr10	410093	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SUPV3L1	ENSG00000156502.14	ENST00000359655.9:ENST00000471069.5:ENST00000483572.5:ENST00000422378.1:ENST00000478227.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	61	2	2.63396	2.93996	3.24596	0.00426634	0.00322919	0.0596808	0.0507087
chr14	26993237	26993337	5664289	0	+	0.41	(0.408,0.44]	chr14	540202	584	INTRON	INTRON	ENSG00000258081	ENSG00000258081.4	ENST00000656336.1:ENST00000552303.1	lncRNA	lncRNA	lncRNA	lncRNA	3	63	2	2.39162	2.939775	3.48793	0.0105837	0.00130904	0.0911864	0.0331539
chrX	119603061	119603161	7873085	0	-	0.57	(0.515,0.57]	chrX	801775	2	SS5_PROX	SS5_PROX:INTRON	NKRF	ENSG00000186416.18	ENST00000304449.8:ENST00000542113.3:ENST00000688521.1	protein_coding	protein_coding	protein_coding	protein_coding	5	86	2	2.79153	2.93971	3.08789	6.28135e-4	4.83127e-4	0.023031	0.0199261
chr17	48574401	48574487	6791007	0	-	0.627907	(0.57,1]	chr17	669980	7	UTR5	UTR5:EXON_MRNA:SS3_PROX:INTRON	HOXB3	ENSG00000120093.12	ENST00000498678.6:ENST00000472863.5:ENST00000311626.8:ENST00000460160.5:ENST00000489475.5:ENST00000476342.1:ENST00000465120.3:ENST00000464266.1:ENST00000552000.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	34	2	2.38391	2.93954	3.49517	0.0104374	6.03609e-4	0.0902296	0.0226059
chr21	43924707	43924807	7414388	0	+	0.63	(0.57,1]	chr21	755702	79	INTRON	INTRON	AGPAT3	ENSG00000160216.21	ENST00000291572.13:ENST00000448287.5:ENST00000398061.5:ENST00000327505.6:ENST00000445582.5	protein_coding	protein_coding	protein_coding	protein_coding	3	34	2	2.38391	2.93954	3.49517	0.0104374	6.03609e-4	0.0902296	0.0226059
chr17	36504979	36505075	6759326	0	-	0.458333	(0.44,0.476]	chr17	664497	11	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	MYO19	ENSG00000278259.5	ENST00000614623.5:ENST00000610992.4:ENST00000621550.4:ENST00000610930.4:ENST00000611622.4:ENST00000611794.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	63	2	2.33272	2.93952	3.54632	0.0129984	9.9951e-4	0.0991656	0.0288906
chr19	34213926	34214026	7051223	0	+	0.47	(0.44,0.476]	chr19	703209	45	INTRON	INTRON	LSM14A	ENSG00000257103.9	ENST00000544216.8:ENST00000540746.6:ENST00000433627.9:ENST00000586157.2:ENST00000588582.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	100	2	2.72256	2.939475	3.15639	0.00111786	3.93757e-4	0.0306954	0.0178567
chr2	39076170	39076270	1101889	0	-	0.46	(0.44,0.476]	chr2	118302	76	INTRON	INTRON	SOS1	ENSG00000115904.15	ENST00000692089.1:ENST00000402219.8:ENST00000690876.1:ENST00000395038.6:ENST00000691229.1:ENST00000689668.1:ENST00000690679.1:ENST00000461545.2:ENST00000451331.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	62	2	2.9044	2.9394549999999997	2.97451	0.00853825	0.00132926	0.0780043	0.0335085
chr11	68466117	68466217	4817386	0	+	0.42	(0.408,0.44]	chr11	448907	49	INTRON	INTRON	PPP6R3	ENSG00000110075.15	ENST00000530427.5:ENST00000528635.5:ENST00000529907.5:ENST00000533127.5:ENST00000534534.5:ENST00000529344.5:ENST00000524845.5:ENST00000393800.7:ENST00000265637.8:ENST00000524904.5:ENST00000393801.7:ENST00000265636.9:ENST00000529710.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	45	2	1.45162	2.939375	4.42713	0.0451203	0.0173083	0.163518	0.104099
chr17	76561751	76561826	6677379	0	+	0.413333	(0.408,0.44]	chr17	652147	1	SS5_PROX	SS5_PROX:INTRON	SNHG16	ENSG00000163597.16	ENST00000661348.2:ENST00000670737.2:ENST00000653677.2:ENST00000493536.7:ENST00000667091.1:ENST00000586942.7:ENST00000586846.2:ENST00000692197.1:ENST00000448136.5:ENST00000668511.1:ENST00000590435.5:ENST00000587838.2:ENST00000686755.1	lncRNA	lncRNA	lncRNA	lncRNA	7	108	2	2.01063	2.939355	3.86808	0.00478395	1.49394e-4	0.0602209	0.0106137
chr19	18510323	18510423	7152897	0	-	0.55	(0.515,0.57]	chr19	722886	345	INTRON	INTRON	ELL	ENSG00000105656.13	ENST00000262809.9:ENST00000594635.6:ENST00000596915.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	71	2	2.92115	2.9392050000000003	2.9572600000000002	0.00110258	0.00108918	0.0303873	0.03038
chr1	244848489	244848588	672928	0	-	0.353535	(0.35,0.378]	chr1	79597	15	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	HNRNPU	ENSG00000153187.20	ENST00000475997.6:ENST00000366527.4:ENST00000649899.1:ENST00000638230.1:ENST00000640657.1:ENST00000640306.1:ENST00000489705.2:ENST00000640264.1	protein_coding	retained_intron	protein_coding	retained_intron:nonsense_mediated_decay:processed_transcript	9	166	2	2.63616	2.9391749999999996	3.24219	4.4837e-4	9.40055e-5	0.0196044	0.00813008
chr21	43883513	43883613	7413973	0	+	0.36	(0.35,0.378]	chr21	755692	5	INTRON	INTRON	AGPAT3	ENSG00000160216.21	ENST00000291572.13:ENST00000448287.5:ENST00000398061.5	protein_coding	protein_coding	protein_coding	protein_coding	6	126	2	2.55441	2.939135	3.32386	0.00126698	1.8439e-4	0.0325433	0.0118315
chr1	243088057	243088144	667237	0	-	0.448276	(0.44,0.476]	chr1	79161	5	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	LINC01347	ENSG00000214837.8	ENST00000627498.2:ENST00000417964.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	3	62	2	2.44514	2.939095	3.43305	0.0087381	0.00159668	0.0845538	0.0364566
chr17	62035708	62035808	6810584	0	-	0.3	(0.28,0.32]	chr17	672945	1	SS3_PROX	SS3_PROX:INTRON	MED13	ENSG00000108510.10	ENST00000397786.7	protein_coding	protein_coding	protein_coding	protein_coding	6	147	2	2.92142	2.93902	2.95662	0.00234443	1.35675e-4	0.0434875	0.0100405
chr18	9920311	9920410	6873404	0	+	0.545455	(0.515,0.57]	chr18	680866	41	INTRON	INTRON	VAPA	ENSG00000101558.14	ENST00000400000.7:ENST00000577901.5:ENST00000340541.4:ENST00000585042.5:ENST00000578314.1:ENST00000584796.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	116	2	2.92726	2.9390099999999997	2.95076	3.10919e-4	6.84086e-5	0.0162055	0.00684369
chr22	20548947	20549046	7479767	0	+	0.464646	(0.44,0.476]	chr22	762972	114	INTRON	INTRON	MED15	ENSG00000099917.17	ENST00000445987.5:ENST00000444094.5:ENST00000414658.5:ENST00000486656.5:ENST00000433831.5:ENST00000432052.5:ENST00000292733.11:ENST00000263205.11:ENST00000477824.5:ENST00000406969.5:ENST00000382974.6:ENST00000441501.5:ENST00000445189.5:ENST00000451058.5:ENST00000473028.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	62	2	2.51554	2.9389250000000002	3.36231	0.00777207	0.00161678	0.0757731	0.0369204
chr8	29050472	29050563	3726474	0	+	0.285714	(0.28,0.32]	chr8	346326	4	EXON_LNCRNA	EXON_LNCRNA:SS3_PROX:INTRON	HMBOX1	ENSG00000147421.18	ENST00000287701.15:ENST00000397358.7:ENST00000521516.5:ENST00000519047.5:ENST00000355231.9:ENST00000524238.3:ENST00000517386.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	94	2	2.64424	2.938895	3.23355	0.004869	0.00159565	0.0607461	0.0367961
chr17	77446279	77446378	6681111	0	+	0.545455	(0.515,0.57]	chr17	652547	17	EXON_MRNA	EXON_MRNA:INTRON	SEPTIN9:ENSG00000279801	ENSG00000184640.20:ENSG00000279801.1	ENST00000591198.5:ENST00000427177.6:ENST00000431235.6:ENST00000449803.6:ENST00000329047.13:ENST00000588575.1:ENST00000590294.6:ENST00000588690.6:ENST00000423034.6:ENST00000590059.5:ENST00000427674.6:ENST00000592420.1:ENST00000585930.5:ENST00000591020.5:ENST00000586521.5:ENST00000624282.1	protein_coding	protein_coding	protein_coding:TEC	protein_coding:retained_intron:nonsense_mediated_decay:TEC	2	27	2	1.7074	2.938885	4.17037	0.0779432	0.0139194	0.196685	0.10247
chr8	106702107	106702206	3846461	0	+	0.535354	(0.515,0.57]	chr8	354203	89	INTRON	INTRON	OXR1	ENSG00000164830.19	ENST00000517566.7:ENST00000531443.6:ENST00000442977.6:ENST00000497705.5:ENST00000435082.1:ENST00000312046.10:ENST00000438229.6:ENST00000517455.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	27	2	1.7074	2.938885	4.17037	0.0779432	0.0139194	0.196685	0.10247
chr1	205749257	205749356	623881	0	-	0.565657	(0.515,0.57]	chr1	74198	181	INTRON	INTRON	NUCKS1	ENSG00000069275.13	ENST00000367142.5	protein_coding	protein_coding	protein_coding	protein_coding	9	147	2	2.86931	2.938745	3.00818	6.65395e-5	4.64989e-5	0.00718589	0.00555027
chr10	6095052	6095152	4385750	0	+	0.42	(0.408,0.44]	chr10	404761	47	INTRON	INTRON	RBM17	ENSG00000134453.16	ENST00000379888.9:ENST00000437845.6:ENST00000432931.5:ENST00000446108.5	protein_coding	protein_coding	protein_coding	protein_coding	2	47	2	2.82042	2.938735	3.05705	0.0120121	0.00658331	0.0962115	0.0701901
chr19	39435120	39435217	7182451	0	-	0.484536	(0.476,0.515]	chr19	726281	15	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	RPS16	ENSG00000105193.9	ENST00000251453.8:ENST00000339471.8:ENST00000599539.5:ENST00000601655.5:ENST00000601390.1:ENST00000599705.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	128	2	2.49114	2.9387	3.38626	7.5016e-4	1.1754e-4	0.0251179	0.00930356
chr6	147328498	147328598	2989967	0	+	0.31	(0.28,0.32]	chr6	280097	4	SS3_PROX	SS3_PROX:INTRON	STXBP5	ENSG00000164506.15	ENST00000321680.11:ENST00000367481.7:ENST00000367480.7:ENST00000367475.6:ENST00000392291.2	protein_coding	protein_coding	protein_coding	protein_coding	4	94	2	2.21798	2.9386599999999996	3.65934	0.00901091	0.00103147	0.0851009	0.029231300000000002
chr1	235151810	235151908	662057	0	-	0.489796	(0.476,0.515]	chr1	78380	30	INTRON	INTRON	RBM34:ARID4B	ENSG00000188739.15:ENSG00000054267.22	ENST00000408888.8:ENST00000474953.5:ENST00000447801.5:ENST00000474086.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	61	2	2.72507	2.938545	3.15202	0.00455841	0.0029369	0.0595107	0.0496505
chr7	151487082	151487181	3674596	0	-	0.555556	(0.515,0.57]	chr7	341195	19	INTRON	INTRON	RHEB	ENSG00000106615.10	ENST00000262187.10:ENST00000472642.5:ENST00000478470.5:ENST00000496004.5:ENST00000470370.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	77	2	2.21273	2.938535	3.66434	0.0196151	1.71942e-5	0.109486	0.00315585
chr3	186786852	186786943	1586127	0	+	0.340659	(0.32,0.35]	chr3	164288	1	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	EIF4A2	ENSG00000156976.17	ENST00000426808.5:ENST00000323963.10:ENST00000440191.6:ENST00000425053.5:ENST00000429589.5:ENST00000485101.5:ENST00000475653.5:ENST00000443963.5:ENST00000468362.5:ENST00000492144.5:ENST00000465792.1:ENST00000475409.1:ENST00000497177.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	291	2	2.75599	2.93847	3.12095	8.85155e-5	1.79538e-5	0.00842626	0.00323537
chr18	32107859	32107959	6887419	0	+	0.54	(0.515,0.57]	chr18	682655	146	INTRON	INTRON	RNF138	ENSG00000134758.14	ENST00000261593.8:ENST00000585103.5:ENST00000578914.1:ENST00000580519.1:ENST00000578107.5:ENST00000583733.1:ENST00000257190.9:ENST00000580499.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	64	2	2.11384	2.93839	3.76294	0.0118599	2.08636e-4	0.0899583	0.0125926
chr17	59840594	59840692	6643741	0	+	0.387755	(0.378,0.408]	chr17	648787	8	UTR3	UTR3:EXON_MRNA	VMP1	ENSG00000062716.13	ENST00000262291.9:ENST00000592790.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	26	503	2	2.76133	2.9383150000000002	3.1153	2.35153e-5	2.08955e-7	0.00396325	2.16476e-4
chr7	127912300	127912399	3405020	0	+	0.40404	(0.378,0.408]	chr7	318161	71	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000465900.5:ENST00000486037.1:ENST00000484767.5:ENST00000492840.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	124	2	2.0508	2.938275	3.82575	0.00164553	3.23711e-4	0.0374638	0.0165891
chr12	28408563	28408663	5102472	0	+	0.27	[0,0.28]	chr12	481982	168	INTRON	INTRON	CCDC91	ENSG00000123106.11	ENST00000540794.5:ENST00000536154.5:ENST00000535520.5:ENST00000539107.5:ENST00000545336.5:ENST00000536442.6:ENST00000543809.5:ENST00000545737.5:ENST00000381259.5:ENST00000540401.5:ENST00000539904.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	88	2	2.62985	2.93822	3.24659	0.00581422	0.00570201	0.068681	0.0656459
chr6	17696998	17697097	3066115	0	-	0.444444	(0.44,0.476]	chr6	284872	80	INTRON	INTRON	NUP153	ENSG00000124789.12	ENST00000613258.4:ENST00000537253.5:ENST00000262077.3	protein_coding	protein_coding	protein_coding	protein_coding	2	31	2	1.77101	2.938205	4.1054	0.0693975	0.0220205	0.184298	0.123836
chr8	90020508	90020608	3791961	0	+	0.47	(0.44,0.476]	chr8	351727	2	SS3_PROX	SS3_PROX:INTRON	DECR1	ENSG00000104325.7	ENST00000519328.5:ENST00000517314.5:ENST00000521603.5:ENST00000523447.5:ENST00000517597.5:ENST00000519410.5:ENST00000220764.7:ENST00000522161.5:ENST00000519007.5:ENST00000518725.5:ENST00000517761.5:ENST00000520227.1:ENST00000524326.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	31	2	1.77101	2.938205	4.1054	0.0693975	0.0220205	0.184298	0.123836
chr3	170155288	170155388	1861565	0	-	0.33	(0.32,0.35]	chr3	186655	42	INTRON	INTRON	PHC3	ENSG00000173889.16	ENST00000495893.7:ENST00000494943.5:ENST00000467570.5:ENST00000484931.5:ENST00000479467.5:ENST00000466189.5:ENST00000475729.5:ENST00000474275.5:ENST00000472330.5:ENST00000465896.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	31	2	1.81328	2.938135	4.06299	0.0615716	0.0559439	0.193423	0.165463
chr4	163139524	163139623	2281034	0	-	0.343434	(0.32,0.35]	chr4	221576	19	INTRON	INTRON	NAF1	ENSG00000145414.9	ENST00000509434.5:ENST00000422287.6:ENST00000274054.3:ENST00000509232.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	31	2	1.81328	2.938135	4.06299	0.0615716	0.0559439	0.193423	0.165463
chr7	156871574	156871674	3687802	0	-	0.35	(0.32,0.35]	chr7	342096	343	INTRON	INTRON	LMBR1	ENSG00000105983.23	ENST00000353442.10:ENST00000415428.5:ENST00000454132.5:ENST00000434503.5:ENST00000430278.5:ENST00000434278.5:ENST00000444719.5:ENST00000461469.5:ENST00000414218.1:ENST00000434453.1:ENST00000498034.5:ENST00000433968.5:ENST00000485985.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	31	2	1.81328	2.938135	4.06299	0.0615716	0.0559439	0.193423	0.165463
chr20	32386831	32386931	7256111	0	+	0.41	(0.408,0.44]	chr20	737076	144	INTRON	INTRON	ASXL1	ENSG00000171456.21	ENST00000651418.1:ENST00000375687.10:ENST00000613218.4:ENST00000644587.1:ENST00000620121.4:ENST00000646985.1:ENST00000643168.1:ENST00000306058.9:ENST00000645688.1:ENST00000470145.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	85	2	2.38802	2.937975	3.48793	0.00178825	0.00130904	0.0392749	0.0331539
chr8	29050101	29050201	3726470	0	+	0.38	(0.378,0.408]	chr8	346325	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	HMBOX1	ENSG00000147421.18	ENST00000287701.15:ENST00000397358.7:ENST00000521516.5:ENST00000519047.5:ENST00000355231.9:ENST00000524238.3:ENST00000517386.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	164	2	2.87622	2.93797	2.99972	1.39843e-4	1.23884e-4	0.0101841	0.010016
chr15	82501186	82501285	6247261	0	-	0.363636	(0.35,0.378]	chr15	596152	229	INTRON	INTRON	GOLGA2P10	ENSG00000255769.7	ENST00000618004.4:ENST00000614347.4:ENST00000618267.4:ENST00000612379.4:ENST00000619738.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	6	52	2	1.31002	2.93776	4.5655	0.0562395	0.0155464	0.184114	0.100909
chr17	82916710	82916808	6695898	0	+	0.367347	(0.35,0.378]	chr17	655036	27	INTRON	INTRON	TBCD	ENSG00000141556.22	ENST00000682479.1:ENST00000682722.1:ENST00000684464.1:ENST00000684544.1:ENST00000681983.1:ENST00000684361.1:ENST00000683184.1:ENST00000683282.1:ENST00000684408.1:ENST00000355528.9:ENST00000683444.1:ENST00000684776.1:ENST00000683041.1:ENST00000684760.1:ENST00000684349.1:ENST00000682213.1:ENST00000539345.6:ENST00000684000.1:ENST00000684188.1:ENST00000684429.1:ENST00000682610.1:ENST00000683821.1:ENST00000682654.1:ENST00000576160.6:ENST00000571712.5:ENST00000576996.5:ENST00000683584.1:ENST00000682099.1:ENST00000684559.1:ENST00000576760.5:ENST00000683839.1:ENST00000574975.5:ENST00000572953.5:ENST00000571796.5:ENST00000682315.1:ENST00000574422.1:ENST00000576677.6:ENST00000571618.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	80	2	2.43108	2.937715	3.44435	0.00345501	0.00179102	0.0539802	0.0380316
chr10	73056681	73056781	4647439	0	-	0.34	(0.32,0.35]	chr10	427530	27	INTRON	INTRON	P4HA1	ENSG00000122884.13	ENST00000394890.7:ENST00000307116.6:ENST00000373008.6:ENST00000440381.5:ENST00000263556.3	protein_coding	protein_coding	protein_coding	protein_coding	8	128	2	1.81244	2.93769	4.06294	0.00748885	1.45551e-4	0.0772645	0.0110245
chr22	20088494	20088590	7478314	0	+	0.59375	(0.57,1]	chr22	762710	8	INTRON	INTRON	DGCR8	ENSG00000128191.16	ENST00000383024.6:ENST00000351989.8:ENST00000495826.5:ENST00000407755.1:ENST00000498171.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	76	2	2.64903	2.9374700000000002	3.22591	9.85026e-4	6.62693e-6	0.0288488	0.00194394
chr1	220202874	220202971	640125	0	-	0.484536	(0.476,0.515]	chr1	75543	1	INTRON	INTRON	RAB3GAP2	ENSG00000118873.17	ENST00000358951.7:ENST00000687065.1:ENST00000686381.1:ENST00000687647.1:ENST00000692972.1:ENST00000690315.1:ENST00000691862.1:ENST00000691661.1:ENST00000690373.1:ENST00000693602.1:ENST00000692813.1:ENST00000685286.1:ENST00000688035.1:ENST00000685664.1:ENST00000690824.1:ENST00000687394.1:ENST00000690379.1:ENST00000478976.1:ENST00000237724.9:ENST00000689820.1:ENST00000484658.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	116	2	2.87406	2.9374450000000003	3.00083	0.00188729	6.46875e-5	0.0391691	0.00666922
chr11	118462064	118462163	4872377	0	+	0.515152	(0.476,0.515]	chr11	454987	122	INTRON	INTRON	ENSG00000285827:KMT2A	ENSG00000285827.1:ENSG00000118058.24	ENST00000648261.1:ENST00000389506.10:ENST00000534358.8:ENST00000533790.3:ENST00000527869.7:ENST00000649690.2:ENST00000691053.1:ENST00000531904.6:ENST00000649699.1:ENST00000648029.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	64	2	2.7646	2.937405	3.11021	0.0162075	5.02606e-4	0.101453	0.020217099999999998
chr17	76451125	76451225	6843106	0	-	0.4	(0.378,0.408]	chr17	676846	452	INTRON	INTRON	UBE2O	ENSG00000175931.13	ENST00000319380.12:ENST00000586409.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	64	2	2.51464	2.93731	3.35998	0.00684341	0.00230615	0.0748032	0.0428247
chr9	135943175	135943271	4372378	0	-	0.53125	(0.515,0.57]	chr9	402520	5	INTRON	INTRON	UBAC1	ENSG00000130560.9	ENST00000371756.4:ENST00000489050.5:ENST00000465873.5:ENST00000471163.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	14	165	2	1.66289	2.93731	4.21173	0.00451529	7.03217e-7	0.061545	5.03243e-4
chr1	180657064	180657164	269846	0	+	0.37	(0.35,0.378]	chr1	31614	244	INTRON	INTRON	XPR1	ENSG00000143324.14	ENST00000367590.9:ENST00000367589.3	protein_coding	protein_coding	protein_coding	protein_coding	2	30	2	1.90405	2.937185	3.97032	0.0578667	0.0482651	0.171852	0.167723
chr1	224363020	224363118	321843	0	+	0.367347	(0.35,0.378]	chr1	37063	21	INTRON	INTRON	CNIH4	ENSG00000143771.12	ENST00000366858.7:ENST00000366857.9:ENST00000465271.6:ENST00000366860.9:ENST00000468318.5:ENST00000366856.3:ENST00000477413.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	30	2	1.90405	2.937185	3.97032	0.0578667	0.0482651	0.171852	0.167723
chr22	40836387	40836485	7590513	0	-	0.377551	(0.35,0.378]	chr22	777255	1	INTRON	INTRON	ST13	ENSG00000100380.15	ENST00000216218.8:ENST00000455824.1:ENST00000413424.5:ENST00000411695.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	30	2	1.90405	2.937185	3.97032	0.0578667	0.0482651	0.171852	0.167723
chr17	81619370	81619469	6849431	0	-	0.484848	(0.476,0.515]	chr17	678231	51	INTRON	INTRON	NPLOC4	ENSG00000182446.14	ENST00000331134.11:ENST00000374747.9:ENST00000574897.5:ENST00000625705.1:ENST00000570300.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	62	2	2.93046	2.93698	2.9435	0.00929849	0.00118985	0.0817766	0.031662
chr7	149615303	149615403	3672529	0	-	0.53	(0.515,0.57]	chr7	340834	513	INTRON	INTRON	ZNF767P	ENSG00000133624.14	ENST00000463567.5:ENST00000472212.5:ENST00000684939.1:ENST00000690388.1:ENST00000486492.5:ENST00000481762.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	7	116	2	2.54655	2.9369300000000003	3.32731	8.595e-4	2.16537e-5	0.0267428	0.00361845
chr6	157316781	157316881	3252005	0	-	0.58	(0.57,1]	chr6	302151	234	INTRON	INTRON	TMEM242	ENSG00000215712.11	ENST00000400788.9	protein_coding	protein_coding	protein_coding	protein_coding	4	40	2	2.52633	2.93692	3.34751	0.0018535	0.00122677	0.039946	0.0320791
chr1	100100465	100100565	515529	0	-	0.26	[0,0.28]	chr1	60434	119	INTRON	INTRON	SASS6	ENSG00000156876.10	ENST00000462159.1:ENST00000287482.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	65	2	2.73384	2.93655	3.13926	0.0246308	0.00563224	0.12011	0.0678837
chr6	57138529	57138628	2878553	0	+	0.363636	(0.35,0.378]	chr6	273283	33	INTRON	INTRON	ZNF451	ENSG00000112200.17	ENST00000357489.7:ENST00000444273.6:ENST00000370706.9:ENST00000491832.6:ENST00000502749.1:ENST00000504603.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	81	2	2.10109	2.936535	3.77198	0.014685	2.78147e-4	0.0983813	0.0148626
chr18	2977185	2977285	6944738	0	-	0.35	(0.32,0.35]	chr18	686832	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	LPIN2	ENSG00000101577.10	ENST00000261596.8:ENST00000677752.1:ENST00000584915.1:ENST00000581568.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	53	2	2.84812	2.9364100000000004	3.0247	0.0147575	0.00671684	0.0983813	0.0738715
chr7	64537909	64538009	3537067	0	-	0.33	(0.32,0.35]	chr7	329904	110	INTRON	INTRON	ZNF680	ENSG00000173041.12	ENST00000309683.11:ENST00000476563.1:ENST00000470847.1:ENST00000447137.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	53	2	2.84812	2.9364100000000004	3.0247	0.0147575	0.00671684	0.0983813	0.0738715
chrX	41339909	41340008	7645708	0	+	0.515152	(0.476,0.515]	chrX	782499	1	EXON_MRNA	EXON_MRNA:INTRON	DDX3X	ENSG00000215301.11	ENST00000625837.2:ENST00000626301.2:ENST00000629785.2:ENST00000630255.2:ENST00000630370.2:ENST00000630858.2:ENST00000629496.3:ENST00000610559.5:ENST00000611546.2:ENST00000478993.5:ENST00000457138.7:ENST00000644876.2:ENST00000399959.7:ENST00000644074.1:ENST00000645338.1:ENST00000646196.1:ENST00000642793.1:ENST00000646940.1:ENST00000644307.1:ENST00000645561.1:ENST00000645080.1:ENST00000642597.1:ENST00000642722.1:ENST00000644109.1:ENST00000644958.1:ENST00000646122.1:ENST00000644513.1:ENST00000645589.1:ENST00000441189.4:ENST00000646822.1:ENST00000631641.2:ENST00000615742.4:ENST00000647219.1:ENST00000646223.1:ENST00000643963.1:ENST00000646319.1:ENST00000645783.1:ENST00000642624.1:ENST00000542215.5:ENST00000644073.1:ENST00000644677.1:ENST00000615313.5:ENST00000642322.1:ENST00000622198.5:ENST00000645120.1:ENST00000646107.1:ENST00000646627.1:ENST00000645253.1:ENST00000642589.1:ENST00000645380.1:ENST00000646390.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	23	425	2	2.86149	2.93641	3.01133	8.80699e-6	9.08563e-7	0.00228408	5.40145e-4
chr6	4818799	4818899	2791286	0	+	0.39	(0.378,0.408]	chr6	263598	416	INTRON	INTRON	CDYL	ENSG00000153046.18	ENST00000328908.9:ENST00000491864.1:ENST00000440139.5:ENST00000483019.1:ENST00000397588.8:ENST00000472453.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	77	2	2.22859	2.9363900000000003	3.64419	0.00763308	7.25777e-4	0.0777238	0.0247646
chr14	103689207	103689305	5828266	0	+	0.459184	(0.44,0.476]	chr14	553132	12	INTRON	INTRON	KLC1	ENSG00000126214.22	ENST00000348520.10:ENST00000334553.11:ENST00000555836.5:ENST00000347839.10:ENST00000452929.6:ENST00000554280.5:ENST00000557450.5:ENST00000554228.5:ENST00000634686.1:ENST00000246489.11:ENST00000537046.6:ENST00000535194.2:ENST00000538504.6:ENST00000557143.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	74	2	2.22103	2.93619	3.65135	0.00776319	6.34922e-4	0.0787356	0.023163
chr21	46269900	46269990	7471265	0	-	0.588889	(0.57,1]	chr21	761662	1	SS5_PROX	SS5_PROX:INTRON	MCM3AP	ENSG00000160294.11	ENST00000397708.1:ENST00000291688.6	protein_coding	protein_coding	protein_coding	protein_coding	4	26	2	1.55956	2.9361650000000004	4.31277	0.0448639	0.00346264	0.149888	0.0539802
chr1	165834921	165835021	243822	0	+	0.34	(0.32,0.35]	chr1	29139	66	INTRON	INTRON	UCK2	ENSG00000143179.16	ENST00000367879.9:ENST00000642653.1	protein_coding	protein_coding	protein_coding	protein_coding	5	122	2	2.37199	2.936135	3.50028	0.00465833	1.55472e-4	0.0629753	0.0113474
chr11	9589392	9589491	4730965	0	+	0.333333	(0.32,0.35]	chr11	438137	9	UTR3	UTR3:EXON_MRNA:INTRON	WEE1	ENSG00000166483.12	ENST00000680141.1:ENST00000450114.7:ENST00000299613.10:ENST00000681684.1:ENST00000530712.6:ENST00000527848.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	204	2	2.762	2.93598	3.10996	2.99124e-4	4.55846e-5	0.0160513	0.00549996
chr7	100639504	100639603	3587329	0	-	0.363636	(0.35,0.378]	chr7	334545	56	INTRON	INTRON	TFR2	ENSG00000106327.13	ENST00000431692.5:ENST00000462107.1:ENST00000223051.8:ENST00000465294.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	80	2	2.35838	2.93593	3.51348	0.00468156	0.00136294	0.0631419	0.0336321
chr20	35044304	35044404	7332415	0	-	0.55	(0.515,0.57]	chr20	746938	4	SS5_PROX	SS5_PROX:INTRON	TRPC4AP	ENSG00000100991.12	ENST00000252015.3:ENST00000451813.6	protein_coding	protein_coding	protein_coding	protein_coding	2	42	2	2.34087	2.93586	3.53085	0.0469761	6.59951e-4	0.151917	0.0232396
chr11	47990607	47990707	4789319	0	+	0.46	(0.44,0.476]	chr11	443265	92	INTRON	INTRON	PTPRJ	ENSG00000149177.14	ENST00000418331.7:ENST00000440289.6:ENST00000527952.1:ENST00000534219.5	protein_coding	protein_coding	protein_coding	protein_coding	2	47	2	2.74372	2.935855	3.12799	0.0153007	0.0050635	0.108569	0.0621733
chr18	705573	705672	6939708	0	-	0.464646	(0.44,0.476]	chr18	686437	79	INTRON	INTRON	ENOSF1	ENSG00000132199.20	ENST00000647584.2:ENST00000383578.7:ENST00000340116.12:ENST00000581475.5:ENST00000580982.5:ENST00000585128.6:ENST00000584453.5:ENST00000578651.5:ENST00000585004.5:ENST00000579053.5:ENST00000583771.1:ENST00000580605.5:ENST00000581332.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	47	2	2.74372	2.935855	3.12799	0.0153007	0.0050635	0.108569	0.0621733
chrX	13334847	13334947	7622298	0	+	0.53	(0.515,0.57]	chrX	780326	10	EXON_LNCRNA	EXON_LNCRNA	LINC01203	ENSG00000226985.7	ENST00000669963.1:ENST00000661545.1:ENST00000659526.1:ENST00000656410.1:ENST00000661104.1:ENST00000456091.2:ENST00000655502.1:ENST00000671651.1	lncRNA	lncRNA	lncRNA	lncRNA	7	107	2	2.47855	2.935855	3.39316	5.02001e-4	1.20237e-4	0.020217099999999998	0.00992311
chr1	21830446	21830535	396977	0	-	0.550562	(0.515,0.57]	chr1	47398	5	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HSPG2	ENSG00000142798.20	ENST00000374695.8:ENST00000486901.1:ENST00000635682.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	53	2	2.51561	2.9358500000000003	3.35609	0.00635044	0.00174131	0.0723103	0.0375363
chr19	10723243	10723342	7013821	0	+	0.525253	(0.515,0.57]	chr19	696920	42	INTRON	INTRON	DNM2	ENSG00000079805.19	ENST00000683738.1:ENST00000682285.1:ENST00000682524.1:ENST00000355667.11:ENST00000389253.9:ENST00000585892.5:ENST00000359692.10:ENST00000408974.8:ENST00000586939.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	97	2	2.46665	2.9356850000000003	3.40472	0.00127844	8.47527e-5	0.0326395	0.0077763
chr12	22635156	22635256	5094842	0	+	0.45	(0.44,0.476]	chr12	481224	91	INTRON	INTRON	ETNK1	ENSG00000139163.16	ENST00000671733.1:ENST00000335148.8:ENST00000672951.1:ENST00000266517.9:ENST00000538218.2:ENST00000673496.1:ENST00000673406.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	125	2	2.52598	2.935675	3.34537	4.52247e-4	2.18713e-4	0.0192381	0.0135522
chr17	62480720	62480820	6652896	0	+	0.37	(0.35,0.378]	chr17	649295	2	SS3_PROX	SS3_PROX:INTRON	TLK2	ENSG00000146872.19	ENST00000582809.5:ENST00000684213.1:ENST00000583843.5:ENST00000579450.5:ENST00000577616.1:ENST00000582195.6:ENST00000682085.1:ENST00000580705.5:ENST00000346027.10:ENST00000326270.13:ENST00000682203.1:ENST00000343388.11:ENST00000683536.1:ENST00000684440.1:ENST00000684772.1:ENST00000682274.1:ENST00000682827.1:ENST00000583690.6:ENST00000682075.1:ENST00000683104.1:ENST00000684012.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	50	2	2.60341	2.935675	3.26794	0.0275785	0.00257067	0.123904	0.0466761
chr6	89779130	89779227	3161620	0	-	0.350515	(0.35,0.378]	chr6	294832	21	INTRON	INTRON	MDN1	ENSG00000112159.12	ENST00000369393.8:ENST00000629399.2:ENST00000439638.1	protein_coding	protein_coding	protein_coding	protein_coding	2	50	2	2.60341	2.935675	3.26794	0.0275785	0.00257067	0.123904	0.0466761
chr7	72266085	72266185	3549192	0	-	0.43	(0.408,0.44]	chr7	330473	1594	INTRON	INTRON	CALN1	ENSG00000183166.11	ENST00000395276.6:ENST00000395275.7:ENST00000329008.9:ENST00000431984.5:ENST00000446128.1	protein_coding	protein_coding	protein_coding	protein_coding	3	63	2	2.6117	2.93559	3.25948	0.00555224	0.00246454	0.0648867	0.0459102
chr20	49128977	49129076	7351778	0	-	0.292929	(0.28,0.32]	chr20	749646	40	INTRON	INTRON	STAU1	ENSG00000124214.21	ENST00000371856.7:ENST00000371828.7:ENST00000340954.11:ENST00000347458.9:ENST00000360426.8:ENST00000371792.5:ENST00000371802.5:ENST00000437404.2	protein_coding	protein_coding	protein_coding	protein_coding	2	33	2	1.83771	2.93558	4.03345	0.0704058	0.0591725	0.189982	0.184298
chr9	111922716	111922816	4184713	0	+	0.29	(0.28,0.32]	chr9	381698	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	UGCG	ENSG00000148154.10	ENST00000374279.4:ENST00000495085.1:ENST00000490110.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	33	2	1.83771	2.93558	4.03345	0.0704058	0.0591725	0.189982	0.184298
chr16	210970	211069	6426003	0	-	0.525253	(0.515,0.57]	chr16	617437	13	INTRON	INTRON	LUC7L	ENSG00000007392.17	ENST00000337351.8:ENST00000426094.5:ENST00000397783.5:ENST00000629543.2:ENST00000490762.5:ENST00000293872.13:ENST00000419516.5:ENST00000397780.5:ENST00000418978.5:ENST00000430864.5:ENST00000443357.5:ENST00000494366.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	19	303	2	2.70989	2.935575	3.16126	2.41341e-5	2.77733e-7	0.00403538	2.61881e-4
chr17	47683082	47683179	6622944	0	+	0.237113	[0,0.28]	chr17	646121	8	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	KPNB1	ENSG00000108424.11	ENST00000583648.6:ENST00000290158.9:ENST00000677341.1:ENST00000580158.2:ENST00000582126.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	144	2	2.82515	2.9355149999999997	3.04588	0.0018829	8.72498e-4	0.0391486	0.0268436
chr12	110310213	110310313	5226392	0	+	0.53	(0.515,0.57]	chr12	495250	131	INTRON	INTRON	ATP2A2	ENSG00000174437.18	ENST00000308664.10:ENST00000539276.7:ENST00000377685.9:ENST00000548169.2:ENST00000550248.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	56	2	1.9459	2.93545	3.925	0.0429089	8.71525e-5	0.148082	0.00783545
chr3	72418309	72418409	1745638	0	-	0.27	[0,0.28]	chr3	177368	378	INTRON	INTRON	RYBP	ENSG00000163602.12	ENST00000477973.5	protein_coding	protein_coding	protein_coding	protein_coding	3	89	2	2.17149	2.935245	3.699	0.0308079	6.64135e-4	0.13151	0.0233423
chr12	76050853	76050953	5369862	0	-	0.5	(0.476,0.515]	chr12	512260	2	SS3_PROX	SS3_PROX:INTRON	NAP1L1	ENSG00000187109.15	ENST00000618691.5:ENST00000552056.5:ENST00000393263.7:ENST00000431879.7:ENST00000552147.5:ENST00000547773.5:ENST00000544816.5:ENST00000542344.5:ENST00000535020.6:ENST00000549596.5:ENST00000547993.5:ENST00000547969.5:ENST00000552342.5:ENST00000547529.6:ENST00000548044.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	154	2	2.7567	2.9352400000000003	3.11378	3.76694e-4	3.20961e-5	0.017994	0.00452256
chr2	61520475	61520575	1131043	0	-	0.46	(0.44,0.476]	chr2	121611	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	XPO1	ENSG00000082898.19	ENST00000676553.1:ENST00000677556.1:ENST00000677814.1:ENST00000676771.1:ENST00000677803.1:ENST00000677239.1:ENST00000678790.1:ENST00000677928.1:ENST00000678182.1:ENST00000677150.1:ENST00000678172.1:ENST00000678360.1:ENST00000678081.1:ENST00000676889.1:ENST00000676783.1:ENST00000679035.1:ENST00000677422.1:ENST00000677417.1:ENST00000677813.1:ENST00000676999.1:ENST00000676667.1:ENST00000678263.1:ENST00000678877.1:ENST00000677933.1:ENST00000680228.1:ENST00000677289.1:ENST00000677190.1:ENST00000401558.7:ENST00000428210.5:ENST00000677290.1:ENST00000677850.1:ENST00000451765.6:ENST00000676789.1:ENST00000678741.1:ENST00000404992.6:ENST00000406957.5:ENST00000443240.5:ENST00000476585.5:ENST00000468259.1:ENST00000420673.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	18	318	2	2.60034	2.9352150000000004	3.27009	1.84849e-5	4.6852e-6	0.00329123	0.00158989
chr12	104301278	104301378	5210153	0	+	0.42	(0.408,0.44]	chr12	493210	98	INTRON	INTRON	TXNRD1	ENSG00000198431.17	ENST00000525566.6:ENST00000526266.5:ENST00000503506.6:ENST00000526691.5:ENST00000531691.5:ENST00000526390.5:ENST00000531689.5:ENST00000529546.5:ENST00000529751.1:ENST00000528079.6:ENST00000526580.5:ENST00000529784.5:ENST00000524698.5:ENST00000527688.5:ENST00000527335.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	44	2	1.35436	2.9352	4.51604	0.0603719	0.0137419	0.19151	0.0949306
chr2	97516145	97516245	1183484	0	-	0.25	[0,0.28]	chr2	126901	2	SS3_PROX	SS3_PROX:INTRON	ANKRD36B	ENSG00000196912.13	ENST00000359901.9:ENST00000258459.12	protein_coding	protein_coding	protein_coding	protein_coding	3	89	2	2.45904	2.9350899999999998	3.41114	0.0137145	0.00211753	0.0949306	0.0425644
chr7	139415534	139415633	3438159	0	+	0.383838	(0.378,0.408]	chr7	320377	26	INTRON	INTRON	LUC7L2:FMC1-LUC7L2	ENSG00000146963.18:ENSG00000269955.2	ENST00000541170.7:ENST00000541515.3:ENST00000619796.4:ENST00000354926.9:ENST00000456182.5:ENST00000263545.7:ENST00000498518.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	142	2	2.34772	2.935075	3.52243	7.16572e-4	1.00701e-4	0.0244192	0.00905982
chr5	57242568	57242668	2358750	0	+	0.47	(0.44,0.476]	chr5	227598	50	INTRON	INTRON	GPBP1	ENSG00000062194.16	ENST00000424459.7:ENST00000514387.6:ENST00000506184.7:ENST00000511209.5:ENST00000264779.6:ENST00000513524.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	11	209	2	2.74937	2.935055	3.12074	1.14588e-4	1.17464e-5	0.00964263	0.0025307
chr10	42365711	42365811	4603433	0	-	0.3	(0.28,0.32]	chr10	424089	43	INTRON	INTRON	ENSG00000215146	ENSG00000215146.5	ENST00000609841.1:ENST00000650175.1:ENST00000609034.1:ENST00000609502.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	7	174	2	2.8203	2.9350199999999997	3.04974	4.24213e-4	2.81644e-4	0.0189958	0.0149891
chr4	39726538	39726638	1953276	0	+	0.41	(0.408,0.44]	chr4	195630	278	INTRON	INTRON	UBE2K	ENSG00000078140.14	ENST00000510934.5:ENST00000261427.10:ENST00000438068.6:ENST00000513231.5:ENST00000503368.5:ENST00000445950.2:ENST00000510719.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	13	185	2	1.82727	2.9349549999999995	4.04264	0.00259418	4.64757e-6	0.0470631	0.00158097
chr6	2970562	2970659	3047723	0	-	0.525773	(0.515,0.57]	chr6	283599	19	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	SERPINB6	ENSG00000124570.21	ENST00000643098.1:ENST00000380546.7:ENST00000380539.7:ENST00000380529.5:ENST00000649845.1:ENST00000644178.1:ENST00000612421.3:ENST00000616722.4:ENST00000642543.1:ENST00000644388.1:ENST00000380520.6:ENST00000645580.1:ENST00000644693.1:ENST00000646775.1:ENST00000645421.1:ENST00000643227.1:ENST00000646688.1:ENST00000644777.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	98	2	2.59745	2.9349299999999996	3.27241	6.62645e-4	1.80226e-4	0.0234815	0.0116696
chrX	9522102	9522202	7619225	0	+	0.52	(0.515,0.57]	chrX	779944	199	INTRON	INTRON	TBL1X	ENSG00000101849.18	ENST00000407597.7:ENST00000380961.5:ENST00000424279.6:ENST00000645353.2:ENST00000422314.5	protein_coding	protein_coding	protein_coding	protein_coding	2	42	2	2.56306	2.9348549999999998	3.30665	0.0247751	0.00213226	0.131869	0.041756
chr3	143014010	143014110	1529202	0	+	0.29	(0.28,0.32]	chr3	159342	3	SS3_PROX	SS3_PROX:INTRON	U2SURP	ENSG00000163714.18	ENST00000600150.5:ENST00000488497.7:ENST00000493782.5:ENST00000473835.7:ENST00000461591.5:ENST00000493598.6:ENST00000463563.6:ENST00000470400.5:ENST00000465175.2:ENST00000485374.5:ENST00000491827.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	96	2	1.76048	2.934755	4.10903	0.0450149	7.08337e-5	0.149888	0.00695952
chr12	120895184	120895284	5435816	0	-	0.51	(0.476,0.515]	chr12	519663	597	INTRON	INTRON	SPPL3	ENSG00000157837.16	ENST00000353487.7:ENST00000536996.5:ENST00000543608.5:ENST00000543854.5	protein_coding	protein_coding	protein_coding	protein_coding	5	98	2	2.75286	2.934665	3.11647	7.3224e-4	6.41912e-4	0.0246502	0.0231685
chr5	10388255	10388353	2317997	0	+	0.326531	(0.32,0.35]	chr5	224637	8	INTRON	INTRON	MARCHF6	ENSG00000145495.16	ENST00000274140.10:ENST00000449913.6:ENST00000502795.5:ENST00000511802.5:ENST00000503788.5:ENST00000640713.1:ENST00000510872.5:ENST00000507863.1:ENST00000506131.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	136	2	2.84076	2.93446	3.02816	0.0027933	7.38256e-5	0.0469265	0.00715612
chr1	147158077	147158176	542215	0	-	0.393939	(0.378,0.408]	chr1	63573	31	UTR3	UTR3:EXON_MRNA	PRKAB2	ENSG00000131791.8	ENST00000254101.4	protein_coding	protein_coding	protein_coding	protein_coding	4	40	2	1.45712	2.934405	4.41169	0.0597975	0.0199606	0.189982	0.109608
chr7	106659792	106659891	3608683	0	-	0.464646	(0.44,0.476]	chr7	336558	56	UTR3	UTR3:EXON_MRNA	CCDC71L	ENSG00000253276.5	ENST00000523505.3	protein_coding	protein_coding	protein_coding	protein_coding	9	125	2	2.28662	2.934405	3.58219	8.57842e-4	4.3755e-4	0.0267428	0.0188526
chr10	28553842	28553942	4414012	0	+	0.39	(0.378,0.408]	chr10	407148	154	INTRON	INTRON	WAC	ENSG00000095787.24	ENST00000680735.1:ENST00000375664.8:ENST00000428935.6:ENST00000651598.1:ENST00000628285.3:ENST00000681112.1:ENST00000679570.1:ENST00000375646.5:ENST00000354911.9:ENST00000347934.8:ENST00000420266.6:ENST00000651885.1:ENST00000651441.1:ENST00000679398.1:ENST00000424454.5:ENST00000442148.6:ENST00000448193.5:ENST00000414108.6:ENST00000679428.1:ENST00000439676.5:ENST00000345541.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	175	2	2.34631	2.93437	3.52243	2.34382e-4	1.00701e-4	0.013547	0.00905982
chr11	107829112	107829211	5033511	0	-	0.424242	(0.408,0.44]	chr11	474339	128	INTRON	INTRON	SLC35F2	ENSG00000110660.15	ENST00000525071.5:ENST00000525815.6:ENST00000533664.1:ENST00000375682.8:ENST00000532513.2:ENST00000524991.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	46	2	2.78122	2.9343	3.08738	0.015812	0.00478231	0.101453	0.0636201
chr18	12600104	12600204	6948710	0	-	0.41	(0.408,0.44]	chr18	687385	113	INTRON	INTRON	SPIRE1	ENSG00000134278.16	ENST00000409402.9:ENST00000410092.7:ENST00000309836.9:ENST00000440472.6:ENST00000453447.6:ENST00000449797.5:ENST00000497844.6:ENST00000462226.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	46	2	2.78122	2.9343	3.08738	0.015812	0.00478231	0.101453	0.0636201
chr16	29511091	29511191	6470676	0	-	0.49	(0.476,0.515]	chr16	625147	52	INTRON	INTRON	ENSG00000288632	ENSG00000288632.1	ENST00000675579.1	lncRNA	lncRNA	lncRNA	lncRNA	5	84	2	2.03337	2.93424	3.83511	0.00851546	2.63754e-4	0.0833995	0.0149561
chr1	30979065	30979164	412019	0	-	0.383838	(0.378,0.408]	chr1	49687	39	INTRON	INTRON	PUM1	ENSG00000134644.16	ENST00000426105.7:ENST00000373747.7:ENST00000257075.9:ENST00000424085.6:ENST00000525843.5:ENST00000440538.6:ENST00000498419.5:ENST00000373741.8:ENST00000373742.6:ENST00000490546.1:ENST00000532678.1:ENST00000526128.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	64	2	2.30628	2.93418	3.56208	0.0163339	6.94246e-4	0.101571	0.0240761
chr15	29743678	29743778	6124621	0	-	0.38	(0.378,0.408]	chr15	583536	5	INTRON	INTRON	TJP1	ENSG00000104067.17	ENST00000346128.10:ENST00000614355.5:ENST00000400011.6:ENST00000356107.11:ENST00000677774.1:ENST00000545208.6	protein_coding	protein_coding	protein_coding	protein_coding	3	64	2	2.30628	2.93418	3.56208	0.0163339	6.94246e-4	0.101571	0.0240761
chr5	146493138	146493238	2515981	0	+	0.31	(0.28,0.32]	chr5	240375	1	SS5_PROX	SS5_PROX:INTRON	TCERG1	ENSG00000113649.13	ENST00000296702.9:ENST00000679501.2:ENST00000394421.7:ENST00000549332.1:ENST00000506524.5:ENST00000505285.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	80	2	2.28998	2.93403	3.57808	0.0166401	0.00141407	0.110511	0.0340865
chr3	37342849	37342948	1396774	0	+	0.434343	(0.408,0.44]	chr3	146446	12	INTRON	INTRON	GOLGA4	ENSG00000144674.17	ENST00000444882.5:ENST00000356847.8:ENST00000361924.7:ENST00000437131.1	protein_coding	protein_coding	protein_coding	protein_coding	2	48	2	2.36073	2.9340200000000003	3.50731	0.0481658	8.5918e-4	0.153019	0.0265787
chr5	36876008	36876107	2601881	0	-	0.494949	(0.476,0.515]	chr5	247327	48	EXON_LNCRNA	EXON_LNCRNA	NIPBL-DT	ENSG00000285967.1	ENST00000647750.1:ENST00000649921.1:ENST00000647824.1	lncRNA	lncRNA	lncRNA	lncRNA	10	176	2	2.61688	2.933945	3.25101	9.10492e-5	7.2893e-5	0.00797978	0.00767614
chr16	8641779	8641877	6284464	0	+	0.622449	(0.57,1]	chr16	601765	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	METTL22	ENSG00000067365.15	ENST00000163678.11:ENST00000381920.8:ENST00000561758.5:ENST00000568967.5:ENST00000572956.5:ENST00000561993.5:ENST00000563501.1:ENST00000565866.5:ENST00000562151.2:ENST00000564107.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	34	2	2.73499	2.933765	3.13254	0.00310655	0.00237434	0.0512344	0.0438057
chr9	37238505	37238605	4118842	0	+	0.28	[0,0.28]	chr9	375389	516	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000461038.5:ENST00000488607.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	107	2	2.65205	2.9337400000000002	3.21543	0.00629013	0.00186389	0.0687434	0.0399675
chr16	88728455	88728553	6539622	0	-	0.612245	(0.57,1]	chr16	633912	4	INTRON	INTRON	PIEZO1	ENSG00000103335.22	ENST00000301015.14	protein_coding	protein_coding	protein_coding	protein_coding	4	40	2	2.30825	2.933725	3.5592	0.00499769	4.21089e-4	0.0617433	0.0183576
chr1	16338184	16338284	382477	0	-	0.53	(0.515,0.57]	chr1	44888	224	INTRON	INTRON	FBXO42	ENSG00000037637.11	ENST00000375592.8	protein_coding	protein_coding	protein_coding	protein_coding	2	43	2	2.23915	2.93368	3.62821	0.0596178	4.12866e-4	0.16883600000000001	0.0181365
chr19	1809442	1809542	7113431	0	-	0.37	(0.35,0.378]	chr19	714790	4	SS5_PROX	SS5_PROX:INTRON	ATP8B3	ENSG00000130270.16	ENST00000310127.10:ENST00000531925.5:ENST00000525591.5:ENST00000526092.6:ENST00000533993.5:ENST00000587160.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	82	2	1.83633	2.933615	4.0309	0.0335602	7.36864e-5	0.134145	0.00714826
chr4	468880	468980	2092868	0	-	0.32	(0.28,0.32]	chr4	206783	241	INTRON	INTRON	ABCA11P:ZNF721	ENSG00000251595.7:ENSG00000182903.16	ENST00000451020.6:ENST00000514396.5:ENST00000507854.1:ENST00000515578.5:ENST00000506646.5:ENST00000507078.1:ENST00000511833.3:ENST00000338977.5:ENST00000505900.1	protein_coding	protein_coding	protein_coding:transcribed_processed_pseudogene	protein_coding:nonsense_mediated_decay:processed_transcript	6	118	2	2.05785	2.933565	3.8092800000000002	0.00560246	5.62738e-4	0.0678837	0.0219303
chr17	81247635	81247731	6847617	0	-	0.40625	(0.378,0.408]	chr17	677867	1	INTRON	INTRON	SLC38A10	ENSG00000157637.13	ENST00000374759.8:ENST00000540966.5:ENST00000576151.1:ENST00000542075.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	127	2	2.75997	2.933405	3.10684	7.19668e-4	1.90348e-4	0.0244856	0.0126178
chr16	31876301	31876401	6341829	0	+	0.49	(0.476,0.515]	chr16	608552	6	INTRON	INTRON	ZNF267	ENSG00000185947.15	ENST00000300870.15:ENST00000394846.7:ENST00000566541.5:ENST00000561814.1:ENST00000562971.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	63	2	2.26034	2.933305	3.60627	0.0166235	7.49088e-4	0.110511	0.0251179
chr9	34191554	34191635	4111394	0	+	0.469136	(0.44,0.476]	chr9	374719	1	EXON_PSEUDO	EXON_PSEUDO:INTRON	UBAP1:RPL35AP2	ENSG00000165006.14:ENSG00000227383.1	ENST00000625521.2:ENST00000379186.8:ENST00000297661.9:ENST00000626262.2:ENST00000439099.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:processed_pseudogene	3	34	2	1.62896	2.933255	4.23755	0.0546679	0.0263357	0.182674	0.122221
chr1	35080241	35080341	67915	0	+	0.36	(0.35,0.378]	chr1	8657	4	INTRON	INTRON	ZMYM1	ENSG00000197056.11	ENST00000650449.1:ENST00000611874.4:ENST00000417119.5:ENST00000466390.5:ENST00000359858.9:ENST00000488455.5:ENST00000373330.1:ENST00000373329.5:ENST00000475654.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	67	2	2.32464	2.93325	3.54186	0.0159285	8.14353e-4	0.101453	0.02604
chr2	8958742	8958842	1063118	0	-	0.4	(0.378,0.408]	chr2	113380	1	SS3_PROX	SS3_PROX:INTRON	MBOAT2	ENSG00000143797.12	ENST00000305997.8:ENST00000486484.5:ENST00000477073.5:ENST00000462696.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	87	2	2.18994	2.933015	3.67609	0.00448961	6.32264e-4	0.0612035	0.0231174
chr20	32384135	32384235	7256084	0	+	0.34	(0.32,0.35]	chr20	737076	117	INTRON	INTRON	ASXL1	ENSG00000171456.21	ENST00000651418.1:ENST00000375687.10:ENST00000613218.4:ENST00000644587.1:ENST00000620121.4:ENST00000646985.1:ENST00000643168.1:ENST00000306058.9:ENST00000645688.1:ENST00000470145.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	86	2	2.62513	2.933	3.24087	0.00420518	0.00156724	0.0572185	0.0365592
chr3	12649386	12649486	1617285	0	-	0.43	(0.408,0.44]	chr3	166995	3	SS3_PROX	SS3_PROX:INTRON	RAF1	ENSG00000132155.14	ENST00000688543.1:ENST00000685348.1:ENST00000251849.9:ENST00000442415.7:ENST00000688444.1:ENST00000692093.1:ENST00000691724.1:ENST00000423275.6:ENST00000687326.1:ENST00000688803.1:ENST00000689876.1:ENST00000686455.1:ENST00000684903.1:ENST00000693312.1:ENST00000690460.1:ENST00000692773.1:ENST00000688625.1:ENST00000693664.1:ENST00000686762.1:ENST00000692311.1:ENST00000692558.1:ENST00000691779.1:ENST00000685738.1:ENST00000690397.1:ENST00000687923.1:ENST00000688269.1:ENST00000693705.1:ENST00000689097.1:ENST00000691899.1:ENST00000689914.1:ENST00000690625.1:ENST00000689389.1:ENST00000687257.1:ENST00000686409.1:ENST00000685653.1:ENST00000689540.1:ENST00000691396.1:ENST00000685437.1:ENST00000689418.1:ENST00000687940.1:ENST00000689481.1:ENST00000491290.2:ENST00000686479.1:ENST00000689033.1:ENST00000692777.1:ENST00000689226.1:ENST00000691718.1:ENST00000692959.1:ENST00000685740.1:ENST00000688753.1:ENST00000688779.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	46	2	2.84077	2.93295	3.02513	0.0132196	0.0059965	0.0940535	0.0700606
chr1	186402711	186402810	277824	0	+	0.424242	(0.408,0.44]	chr1	32482	33	INTRON	INTRON	ODR4	ENSG00000157181.16	ENST00000367470.8:ENST00000287859.11:ENST00000419367.8:ENST00000478571.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	99	2	2.82697	2.9328950000000003	3.03882	9.66897e-4	4.95662e-4	0.0282401	0.0201536
chr10	35444389	35444488	4425585	0	+	0.474747	(0.44,0.476]	chr10	407912	98	INTRON	INTRON	CCNY	ENSG00000108100.18	ENST00000374706.5:ENST00000490012.6:ENST00000493157.6:ENST00000374704.8:ENST00000265375.13:ENST00000339497.7:ENST00000492478.5:ENST00000470025.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	61	2	2.59888	2.932785	3.26669	0.00487719	0.00305435	0.0640618	0.0493883
chr6	122432319	122432419	2947659	0	+	0.41	(0.408,0.44]	chr6	277511	2	UTR3	UTR3:EXON_MRNA	HSF2	ENSG00000025156.13	ENST00000452194.5:ENST00000368455.9	protein_coding	protein_coding	protein_coding	protein_coding	4	83	2	2.6117	2.932765	3.2538299999999998	0.00555224	2.37059e-4	0.0648867	0.0136195
chr9	120817027	120817124	4335485	0	-	0.226804	[0,0.28]	chr9	398271	11	UTR3	UTR3:EXON_MRNA:INTRON	PSMD5	ENSG00000095261.14	ENST00000373920.6:ENST00000210313.8	protein_coding	protein_coding	protein_coding	protein_coding	10	180	2	1.79581	2.9327249999999996	4.06964	0.00675753	2.7785e-4	0.0741102	0.0152952
chr12	79879331	79879431	5375976	0	-	0.39	(0.378,0.408]	chr12	512793	60	INTRON	INTRON	PPP1R12A	ENSG00000058272.19	ENST00000261207.9:ENST00000450142.7:ENST00000437004.6:ENST00000546369.5:ENST00000550107.5:ENST00000547330.5:ENST00000550510.5	protein_coding	protein_coding	protein_coding	protein_coding	2	48	2	2.53503	2.932645	3.33026	0.0319942	0.00189824	0.13174	0.0402736
chr6	131613928	131614027	3221523	0	-	0.313131	(0.28,0.32]	chr6	299423	33	INTRON	INTRON	MED23	ENSG00000112282.18	ENST00000354577.8:ENST00000368068.8:ENST00000368060.7:ENST00000368058.5:ENST00000368053.8:ENST00000539158.1	protein_coding	protein_coding	protein_coding	protein_coding	4	93	2	2.28714	2.93261	3.57808	0.00696126	0.00141407	0.0754576	0.0340865
chr1	43977311	43977411	88686	0	+	0.44	(0.408,0.44]	chr1	11942	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	ATP6V0B	ENSG00000117410.14	ENST00000532642.5:ENST00000236067.8:ENST00000471859.6:ENST00000472174.7:ENST00000468183.5:ENST00000473485.5:ENST00000498664.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	39	2	1.43792	2.932525	4.42713	0.062843	0.0173083	0.196433	0.104099
chr12	104676270	104676370	5212881	0	+	0.46	(0.44,0.476]	chr12	493329	739	INTRON	INTRON	CHST11	ENSG00000171310.11	ENST00000303694.6:ENST00000549260.5:ENST00000549016.1	protein_coding	protein_coding	protein_coding	protein_coding	2	46	2	2.89047	2.93249	2.97451	0.00955699	0.00853825	0.0863913	0.0780043
chr19	16131049	16131143	7026453	0	+	0.553191	(0.515,0.57]	chr19	699268	11	INTRON	INTRON	RAB8A	ENSG00000167461.12	ENST00000300935.8:ENST00000586682.1:ENST00000592971.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	43	2	2.46104	2.93246	3.40388	0.032841	0.00142538	0.145164	0.0340865
chr22	20556240	20556339	7479854	0	+	0.333333	(0.32,0.35]	chr22	763003	7	INTRON	INTRON	MED15	ENSG00000099917.17	ENST00000444094.5:ENST00000414658.5:ENST00000433831.5:ENST00000432052.5:ENST00000292733.11:ENST00000263205.11:ENST00000477824.5:ENST00000406969.5:ENST00000382974.6:ENST00000441501.5:ENST00000473028.5:ENST00000457322.5:ENST00000428629.5:ENST00000424287.5:ENST00000423862.5:ENST00000487550.5:ENST00000476767.5:ENST00000492381.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	53	2	2.89743	2.932445	2.96746	0.0127608	0.00815799	0.0926667	0.0810802
chr2	8994767	8994866	1063480	0	-	0.40404	(0.378,0.408]	chr2	113387	200	INTRON	INTRON	MBOAT2	ENSG00000143797.12	ENST00000305997.8:ENST00000486484.5:ENST00000477073.5:ENST00000462696.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	88	2	2.46596	2.93234	3.39872	0.0019852	0.00125753	0.0404516	0.03295
chr8	9032074	9032171	3695858	0	+	0.402062	(0.378,0.408]	chr8	342942	22	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	ERI1	ENSG00000104626.15	ENST00000519292.5:ENST00000250263.8:ENST00000520332.5:ENST00000518663.1:ENST00000522612.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	88	2	2.46596	2.93234	3.39872	0.0019852	0.00125753	0.0404516	0.03295
chr13	110904264	110904342	5650539	0	-	0.512821	(0.476,0.515]	chr13	538374	4	EXON_LNCRNA	EXON_LNCRNA:INTRON	ANKRD10	ENSG00000088448.14	ENST00000267339.6:ENST00000489973.6:ENST00000310847.8:ENST00000465753.1:ENST00000494859.5:ENST00000464579.1:ENST00000463156.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	23	392	2	2.43207	2.9318999999999997	3.43173	2.89331e-5	7.92066e-7	0.00426536	5.43864e-4
chr6	68676622	68676722	2886732	0	+	0.38	(0.378,0.408]	chr6	273730	368	INTRON	INTRON	ADGRB3	ENSG00000135298.15	ENST00000370598.6:ENST00000684661.1:ENST00000546190.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	76	2	2.39048	2.93185	3.47322	0.00395852	0.00147803	0.057511	0.0348908
chr16	2256507	2256605	6431575	0	-	0.44898	(0.44,0.476]	chr16	618786	9	EXON_MRNA	EXON_MRNA:INTRON	RNPS1	ENSG00000205937.12	ENST00000397086.6:ENST00000566458.5:ENST00000320225.10:ENST00000562205.1:ENST00000566397.5:ENST00000565678.5:ENST00000561718.5:ENST00000568631.5:ENST00000569598.6:ENST00000301730.12:ENST00000567147.5:ENST00000565243.2:ENST00000565870.5:ENST00000561518.5:ENST00000564311.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	172	2	2.51823	2.93173	3.34523	6.77243e-4	6.85159e-6	0.0238226	0.00186176
chr10	21553596	21553693	4404604	0	+	0.42268	(0.408,0.44]	chr10	406433	13	INTRON	INTRON	MLLT10	ENSG00000078403.17	ENST00000651097.1:ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000377100.8:ENST00000377091.7:ENST00000650772.1:ENST00000651298.1:ENST00000652497.1:ENST00000495130.5:ENST00000377059.7:ENST00000621220.4:ENST00000476557.5:ENST00000462999.5:ENST00000430455.2:ENST00000479634.1:ENST00000480415.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	136	2	2.90747	2.93171	2.95595	4.77325e-4	8.31527e-5	0.0202392	0.00767539
chr14	99405287	99405371	5966461	0	-	0.380952	(0.378,0.408]	chr14	566889	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	SETD3	ENSG00000183576.13	ENST00000331768.10:ENST00000446066.5:ENST00000489770.1:ENST00000453764.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	49	2	2.38873	2.93125	3.47377	0.0458857	0.00103087	0.149888	0.0294094
chr12	62322109	62322207	5150176	0	+	0.5	(0.476,0.515]	chr12	487327	1	INTRON	INTRON	USP15	ENSG00000135655.16	ENST00000353364.7:ENST00000550632.5:ENST00000312635.10:ENST00000280377.10:ENST00000549237.5:ENST00000546694.1:ENST00000552997.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	61	2	2.81076	2.93114	3.05152	0.0064848	0.00203568	0.0699952	0.0417667
chr19	2789721	2789820	6997484	0	+	0.525253	(0.515,0.57]	chr19	693776	23	INTRON	INTRON	THOP1	ENSG00000172009.15	ENST00000307741.11:ENST00000585673.5:ENST00000585338.1:ENST00000586780.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	40	2	2.83188	2.9311249999999998	3.03037	0.0108207	0.00608732	0.0920575	0.0676501
chr10	21692592	21692691	4406015	0	+	0.383838	(0.378,0.408]	chr10	406535	37	INTRON	INTRON	MLLT10	ENSG00000078403.17	ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000651298.1:ENST00000377059.7:ENST00000651382.1:ENST00000438473.6:ENST00000420525.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	77	2	2.13797	2.9309700000000003	3.72397	0.0124882	3.23378e-4	0.0923444	0.0159645
chr13	111281566	111281664	5545998	0	+	0.387755	(0.378,0.408]	chr13	529867	5	INTRON	INTRON	ARHGEF7	ENSG00000102606.19	ENST00000317133.9:ENST00000375739.6:ENST00000375741.6:ENST00000646102.2:ENST00000469877.5:ENST00000466143.5:ENST00000218789.9:ENST00000375736.8:ENST00000426073.6:ENST00000375723.5:ENST00000478679.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	77	2	2.13797	2.9309700000000003	3.72397	0.0124882	3.23378e-4	0.0923444	0.0159645
chr3	179156801	179156901	1565885	0	+	0.4	(0.378,0.408]	chr3	161904	67	INTRON	INTRON	PIK3CA	ENSG00000121879.6	ENST00000477735.1:ENST00000263967.4:ENST00000643187.1:ENST00000675786.1:ENST00000468036.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	77	2	2.66822	2.93095	3.19368	0.00426861	0.00112898	0.0573912	0.0308465
chr8	38236451	38236548	3735569	0	+	0.463918	(0.44,0.476]	chr8	347092	15	INTRON	INTRON	DDHD2	ENSG00000085788.14	ENST00000527834.5:ENST00000397166.7:ENST00000519857.5:ENST00000526237.5:ENST00000526370.1:ENST00000528358.5:ENST00000529642.1:ENST00000532222.5:ENST00000520272.6:ENST00000527415.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	28	2	1.85146	2.93092	4.01038	0.0545846	0.0433743	0.182529	0.148082
chr1	42696464	42696541	84085	0	+	0.493506	(0.476,0.515]	chr1	11031	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	YBX1	ENSG00000065978.19	ENST00000321358.12:ENST00000332220.10:ENST00000436427.1:ENST00000467957.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	61	2	2.48551	2.930915	3.37632	0.00756632	0.00195267	0.0773151	0.0400465
chr4	139396815	139396915	2050672	0	+	0.45	(0.44,0.476]	chr4	203414	27	INTRON	INTRON	NAA15	ENSG00000164134.13	ENST00000515576.1	protein_coding	protein_coding	protein_coding	protein_coding	3	62	2	2.39003	2.9309149999999997	3.4718	0.0106488	0.00136358	0.0915714	0.0336321
chr9	124922192	124922292	4349734	0	-	0.43	(0.408,0.44]	chr9	399371	3	SS3_PROX	SS3_PROX:INTRON	GOLGA1	ENSG00000136935.14	ENST00000373555.9:ENST00000475407.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	86	2	1.92871	2.9309	3.93309	0.0127189	1.78185e-4	0.0986242	0.0121697
chr1	227252065	227252165	651055	0	-	0.27	[0,0.28]	chr1	77102	323	INTRON	INTRON	CDC42BPA	ENSG00000143776.20	ENST00000366766.8:ENST00000366769.7:ENST00000334218.9:ENST00000366767.7:ENST00000366764.8:ENST00000478573.6:ENST00000682551.1:ENST00000462553.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	108	2	1.82783	2.93086	4.03389	0.0410712	1.46948e-4	0.1451	0.0105341
chrX	123630604	123630701	7878006	0	-	0.350515	(0.35,0.378]	chrX	802471	23	INTRON	INTRON	THOC2	ENSG00000125676.20	ENST00000245838.13:ENST00000355725.8:ENST00000491737.5	protein_coding	protein_coding	protein_coding	protein_coding	4	80	2	2.56634	2.9308199999999998	3.2953	0.0031465	0.00190773	0.0500431	0.0403772
chr17	46165847	46165947	6784598	0	-	0.42	(0.408,0.44]	chr17	669232	86	INTRON	INTRON	KANSL1	ENSG00000120071.15	ENST00000574590.6:ENST00000572904.6:ENST00000432791.7:ENST00000575318.6:ENST00000638275.1:ENST00000262419.10:ENST00000648792.1:ENST00000639531.1:ENST00000639150.1:ENST00000639853.1:ENST00000571698.2:ENST00000639375.1:ENST00000638269.1:ENST00000576248.2:ENST00000639356.1:ENST00000574655.6:ENST00000639099.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	34	2	1.6306	2.93078	4.23096	0.0544158	0.0278028	0.182272	0.123904
chr22	49456805	49456905	7600647	0	-	0.42	(0.408,0.44]	chr22	778566	152	INTRON	INTRON	MIR3667HG	ENSG00000188511.13	ENST00000414287.5:ENST00000416411.1	lncRNA	lncRNA	lncRNA	lncRNA	3	34	2	1.6306	2.93078	4.23096	0.0544158	0.0278028	0.182272	0.123904
chr6	7149495	7149595	2798782	0	+	0.41	(0.408,0.44]	chr6	263733	83	INTRON	INTRON	RREB1	ENSG00000124782.21	ENST00000379933.7:ENST00000491191.5:ENST00000471433.5:ENST00000379938.7:ENST00000467782.5:ENST00000349384.10:ENST00000334984.10:ENST00000475946.5:ENST00000483150.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	34	2	1.6306	2.93078	4.23096	0.0544158	0.0278028	0.182272	0.123904
chr6	161059135	161059235	3025169	0	+	0.5	(0.476,0.515]	chr6	282325	88	INTRON	INTRON	MAP3K4	ENSG00000085511.20	ENST00000366919.6:ENST00000392142.9:ENST00000542952.5:ENST00000366920.6:ENST00000348824.11:ENST00000544041.5:ENST00000490904.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	207	2	2.72499	2.93071	3.13643	1.25174e-4	1.08471e-5	0.0100786	0.00242118
chr1	224951172	224951271	322567	0	+	0.484848	(0.476,0.515]	chr1	37105	210	INTRON	INTRON	DNAH14	ENSG00000185842.16	ENST00000445597.6:ENST00000430092.5:ENST00000366850.7:ENST00000400952.7:ENST00000682510.1:ENST00000366849.5:ENST00000498360.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	124	2	2.44393	2.9307	3.41747	7.12759e-4	1.45317e-4	0.0243332	0.0110154
chr9	124401943	124402042	4346521	0	-	0.494949	(0.476,0.515]	chr9	399175	31	INTRON	INTRON	PSMB7	ENSG00000136930.13	ENST00000259457.8:ENST00000498485.5:ENST00000441097.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	98	2	2.59108	2.93056	3.27004	0.00196853	2.20887e-4	0.0402283	0.0130309
chr9	131498919	131499018	4218056	0	+	0.343434	(0.32,0.35]	chr9	386889	32	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	PRRC2B	ENSG00000288701.1	ENST00000684596.1:ENST00000683519.1:ENST00000682501.1:ENST00000682662.1:ENST00000683161.1:ENST00000684112.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	88	2	2.36223	2.93046	3.49869	0.00625472	0.00108004	0.0684171	0.0300133
chr1	235237844	235237943	662953	0	-	0.50505	(0.476,0.515]	chr1	78516	30	INTRON	INTRON	ARID4B	ENSG00000054267.22	ENST00000349213.7:ENST00000366603.6:ENST00000264183.9:ENST00000421364.5:ENST00000491632.5:ENST00000418304.1:ENST00000466653.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	34	2	1.61586	2.930435	4.24501	0.0567093	0.0247713	0.185107	0.12011
chr17	29420187	29420287	6585934	0	+	0.5	(0.476,0.515]	chr17	640377	162	INTRON	INTRON	TAOK1	ENSG00000160551.12	ENST00000261716.8:ENST00000583121.5:ENST00000587277.1:ENST00000536202.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	34	2	1.61586	2.930435	4.24501	0.0567093	0.0247713	0.185107	0.12011
chr1	113080534	113080634	188167	0	+	0.52	(0.515,0.57]	chr1	20854	65	INTRON	INTRON	LRIG2	ENSG00000198799.12	ENST00000361127.6	protein_coding	protein_coding	protein_coding	protein_coding	5	72	2	2.16051	2.930405	3.7003	0.0046825	3.73715e-4	0.0631419	0.0179087
chr16	23936529	23936629	6324766	0	+	0.38	(0.378,0.408]	chr16	605701	428	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000498739.1	protein_coding	protein_coding	protein_coding	protein_coding	9	179	2	2.6654	2.930335	3.19527	3.5967e-4	1.98427e-5	0.0175552	0.00343561
chr4	1211742	1211841	2094616	0	-	0.393939	(0.378,0.408]	chr4	207101	4	UTR3	UTR3:EXON_MRNA	CTBP1	ENSG00000159692.16	ENST00000382952.8:ENST00000290921.10:ENST00000503594.5	protein_coding	protein_coding	protein_coding	protein_coding	8	143	2	2.17179	2.93018	3.68857	0.00178023	4.15084e-5	0.039274	0.00546267
chr16	1374769	1374868	6427568	0	-	0.626263	(0.57,1]	chr16	617816	28	INTRON	INTRON	UNKL	ENSG00000059145.19	ENST00000389221.9:ENST00000248104.11:ENST00000403703.5:ENST00000674376.1:ENST00000397464.5:ENST00000508903.7:ENST00000402641.6:ENST00000513783.1:ENST00000515195.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	55	2	1.85921	2.930175	4.00114	0.00662994	3.23665e-5	0.0703181	0.00453487
chr3	185936322	185936422	1886587	0	-	0.35	(0.32,0.35]	chr3	188644	20	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:INTRON	TRA2B	ENSG00000136527.19	ENST00000453386.7:ENST00000487615.5:ENST00000456380.5:ENST00000382191.4:ENST00000465245.1:ENST00000485530.5:ENST00000471134.1:ENST00000480461.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	31	699	2	2.5772	2.9301649999999997	3.28313	1.52466e-5	9.2439e-7	0.0029363	5.98778e-4
chr10	123167967	123168067	4533301	0	+	0.56	(0.515,0.57]	chr10	418445	30	UTR3	UTR3:EXON_MRNA	BUB3	ENSG00000154473.18	ENST00000368865.9	protein_coding	protein_coding	protein_coding	protein_coding	3	53	2	2.82994	2.930155	3.03037	0.00608732	0.00168661	0.0676501	0.0381778
chr7	129016199	129016293	3636192	0	-	0.531915	(0.515,0.57]	chr7	338128	7	INTRON	INTRON	TNPO3	ENSG00000064419.14	ENST00000627585.2:ENST00000265388.10:ENST00000471234.5:ENST00000482320.5:ENST00000471166.1	protein_coding	protein_coding	protein_coding	protein_coding	3	53	2	2.82994	2.930155	3.03037	0.00608732	0.00168661	0.0676501	0.0381778
chr10	86766812	86766912	4479499	0	+	0.53	(0.515,0.57]	chr10	412292	95	INTRON	INTRON	BMPR1A	ENSG00000107779.14	ENST00000638429.1:ENST00000372037.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	53	2	2.48902	2.930135	3.37125	0.00760558	0.00136343	0.0749571	0.0339121
chr1	39154667	39154767	75383	0	+	0.46	(0.44,0.476]	chr1	9693	486	INTRON	INTRON	MACF1	ENSG00000127603.32	ENST00000361689.7:ENST00000689911.1:ENST00000567887.5:ENST00000372915.8:ENST00000472385.2:ENST00000693209.1:ENST00000524432.5:ENST00000467673.5:ENST00000688212.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	33	2	2.02558	2.92999	3.8344	0.041276	0.0363567	0.161534	0.138959
chr1	28915273	28915372	58963	0	+	0.464646	(0.44,0.476]	chr1	7621	1	INTRON	INTRON	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000647918.1:ENST00000646800.1:ENST00000644342.1:ENST00000646189.1:ENST00000482464.6:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000646260.1:ENST00000373798.5:ENST00000644600.1:ENST00000649674.1:ENST00000643173.1:ENST00000343067.9:ENST00000644780.1:ENST00000650265.1:ENST00000648181.1:ENST00000643604.1:ENST00000648891.1:ENST00000373797.2:ENST00000349460.9:ENST00000645184.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	61	2	2.78129	2.9299549999999996	3.07862	0.0060153	0.00229634	0.0674604	0.0439319
chr17	37309958	37310058	6762075	0	-	0.47	(0.44,0.476]	chr17	664944	103	INTRON	INTRON	ACACA	ENSG00000278540.5	ENST00000616317.5:ENST00000614428.4:ENST00000613146.4:ENST00000615229.4:ENST00000621960.1:ENST00000617548.1:ENST00000616352.4:ENST00000614789.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	61	2	2.78129	2.9299549999999996	3.07862	0.0060153	0.00229634	0.0674604	0.0439319
chr16	89482246	89482346	6543519	0	-	0.45	(0.44,0.476]	chr16	634281	506	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	113	2	2.82628	2.9298900000000003	3.0335	9.65686e-4	1.78564e-4	0.0282401	0.0116619
chr16	30066384	30066474	6336716	0	+	0.588889	(0.57,1]	chr16	607160	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ENSG00000285043:ALDOA	ENSG00000285043.3:ENSG00000149925.22	ENST00000395248.6:ENST00000566897.6:ENST00000568435.6:ENST00000338110.11:ENST00000562168.5:ENST00000569545.5:ENST00000563060.6:ENST00000564521.6:ENST00000412304.6:ENST00000563987.5:ENST00000642816.3:ENST00000643777.4:ENST00000567555.1:ENST00000569798.5:ENST00000395240.7:ENST00000566012.1:ENST00000566846.5:ENST00000562679.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	53	2	2.80351	2.92988	3.05625	0.00172505	8.84921e-5	0.0374701	0.00791674
chr14	20317368	20317444	5832991	0	-	0.539474	(0.515,0.57]	chr14	553932	2	SS5_PROX	SS5_PROX:INTRON	CCNB1IP1	ENSG00000100814.18	ENST00000353689.8:ENST00000437553.6:ENST00000398160.6:ENST00000358932.9:ENST00000398169.7:ENST00000398163.6:ENST00000556854.5:ENST00000557665.5:ENST00000556563.5:ENST00000553291.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	53	2	2.45585	2.929865	3.40388	0.00797827	0.00142538	0.0798772	0.0340865
chr19	52083004	52083103	7205739	0	-	0.484848	(0.476,0.515]	chr19	731297	56	INTRON	INTRON	ZNF432:ZNF841	ENSG00000256087.7:ENSG00000197608.12	ENST00000598446.1:ENST00000594440.6:ENST00000426391.6:ENST00000594295.5:ENST00000389534.8:ENST00000599430.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	46	2	2.56033	2.9298599999999997	3.29939	0.0287634	0.00211868	0.127066	0.0425644
chr7	66683140	66683235	3324897	0	+	0.484211	(0.476,0.515]	chr7	309217	5	INTRON	INTRON	ENSG00000226824:RABGEF1	ENSG00000226824.8:ENSG00000154710.18	ENST00000693151.1:ENST00000607882.5	protein_coding	nonsense_mediated_decay	protein_coding:lncRNA	nonsense_mediated_decay:lncRNA	2	46	2	2.56033	2.9298599999999997	3.29939	0.0287634	0.00211868	0.127066	0.0425644
chr1	2242422	2242522	2307	0	+	0.58	(0.57,1]	chr1	553	94	INTRON	INTRON	SKI	ENSG00000157933.10	ENST00000378536.5:ENST00000508416.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	52	2	2.66249	2.92978	3.19707	9.0016e-4	2.16062e-4	0.0277303	0.0129138
chr21	43760622	43760721	7413591	0	+	0.565657	(0.515,0.57]	chr21	755598	47	UTR3	UTR3:EXON_MRNA	PDXK	ENSG00000160209.19	ENST00000468090.5:ENST00000291565.9:ENST00000467908.1	protein_coding	protein_coding	protein_coding	protein_coding	7	88	2	1.73168	2.92976	4.12784	0.0119342	4.0232e-5	0.0962115	0.00539487
chr2	86560234	86560334	1171749	0	-	0.4	(0.378,0.408]	chr2	125049	175	INTRON	INTRON	CHMP3	ENSG00000115561.16	ENST00000263856.9:ENST00000409727.5:ENST00000409225.2:ENST00000393773.7:ENST00000486404.5:ENST00000485465.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	130	2	2.39689	2.9297	3.46251	9.29812e-4	1.37139e-4	0.0278746	0.0106749
chr8	29062483	29062582	3726598	0	+	0.363636	(0.35,0.378]	chr8	346339	52	INTRON	INTRON	HMBOX1	ENSG00000147421.18	ENST00000522468.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	5	91	2	2.21686	2.92969	3.64252	0.00414535	8.02255e-4	0.0589266	0.0262199
chr2	201118301	201118395	981547	0	+	0.659574	(0.57,1]	chr2	105362	8	INTRON	INTRON	CFLAR	ENSG00000003402.21	ENST00000443227.5:ENST00000309955.8:ENST00000341222.10:ENST00000341582.10:ENST00000342795.9:ENST00000395148.6:ENST00000441224.5:ENST00000433445.1	protein_coding	protein_coding	protein_coding	protein_coding	2	28	2	2.36411	2.92964	3.49517	0.0408868	6.03609e-4	0.161534	0.0226059
chr3	3127228	3127326	1349448	0	+	0.704082	(0.57,1]	chr3	141827	4	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	TRNT1	ENSG00000072756.17	ENST00000651591.1:ENST00000251607.11:ENST00000339437.11:ENST00000651316.1:ENST00000280591.10:ENST00000650755.1:ENST00000465998.1:ENST00000650989.1:ENST00000651093.1:ENST00000651352.1:ENST00000434583.5:ENST00000397779.3:ENST00000420393.5:ENST00000413000.1:ENST00000402675.5:ENST00000469632.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	28	2	2.36411	2.92964	3.49517	0.0408868	6.03609e-4	0.161534	0.0226059
chr1	42939936	42940035	432953	0	-	0.494949	(0.476,0.515]	chr1	52489	83	INTRON	INTRON	SLC2A1	ENSG00000117394.24	ENST00000426263.10:ENST00000630287.2:ENST00000675112.1:ENST00000674765.1:ENST00000475162.3:ENST00000625233.2:ENST00000372500.4:ENST00000415851.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	61	2	2.365	2.929555	3.49411	0.0128901	9.23453e-4	0.0926667	0.0278392
chr2	64018137	64018237	1140001	0	-	0.29	(0.28,0.32]	chr2	122046	338	INTRON	INTRON	VPS54	ENSG00000143952.20	ENST00000409558.8:ENST00000272322.9	protein_coding	protein_coding	protein_coding	protein_coding	4	93	2	2.5905300000000002	2.9295150000000003	3.2685	0.00432734	0.0020216	0.0579331	0.0416117
chr7	111266197	111266297	3621144	0	-	0.41	(0.408,0.44]	chr7	337093	3023	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	63	2	2.33431	2.9295099999999996	3.52471	0.0129219	0.00112428	0.0990564	0.0306963
chr5	96988555	96988654	2435350	0	+	0.484848	(0.476,0.515]	chr5	234000	15	INTRON	INTRON	LNPEP	ENSG00000113441.16	ENST00000231368.10:ENST00000395770.3	protein_coding	protein_coding	protein_coding	protein_coding	2	46	2	2.80729	2.929405	3.05152	0.0126008	0.0064848	0.0980703	0.0699952
chrX	74614021	74614121	7841943	0	-	0.51	(0.476,0.515]	chrX	799794	2	SS5_PROX	SS5_PROX:INTRON	RLIM	ENSG00000131263.13	ENST00000332687.11:ENST00000349225.2	protein_coding	protein_coding	protein_coding	protein_coding	2	46	2	2.80729	2.929405	3.05152	0.0126008	0.0064848	0.0980703	0.0699952
chr19	19453612	19453712	7035827	0	+	0.39	(0.378,0.408]	chr19	701448	170	INTRON	INTRON	GATAD2A	ENSG00000167491.18	ENST00000494516.6:ENST00000360315.7:ENST00000609040.5:ENST00000417582.6:ENST00000683918.1:ENST00000432704.5:ENST00000404158.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	89	2	2.09688	2.929315	3.76175	0.00805155	2.68579e-4	0.0766625	0.0145349
chr4	15617489	15617589	2114476	0	-	0.41	(0.408,0.44]	chr4	208823	47	INTRON	INTRON	FBXL5	ENSG00000118564.15	ENST00000341285.8:ENST00000412094.6:ENST00000511441.5:ENST00000513163.5:ENST00000507700.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	46	2	2.6542	2.929285	3.20437	0.0227514	0.00306596	0.117618	0.0509893
chr7	97144017	97144117	3357224	0	+	0.41	(0.408,0.44]	chr7	313218	8	INTRON	INTRON	SDHAF3	ENSG00000196636.8	ENST00000432641.3:ENST00000360382.4:ENST00000479853.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	46	2	2.6542	2.929285	3.20437	0.0227514	0.00306596	0.117618	0.0509893
chr7	127861415	127861515	3404506	0	+	0.41	(0.408,0.44]	chr7	318146	166	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000468166.5:ENST00000465900.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	46	2	2.6542	2.929285	3.20437	0.0227514	0.00306596	0.117618	0.0509893
chr17	76563702	76563799	6677400	0	+	0.113402	[0,0.28]	chr17	652151	7	EXON_LNCRNA	EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SNHG16	ENSG00000163597.16	ENST00000661348.2:ENST00000670737.2:ENST00000653677.2:ENST00000493536.7:ENST00000667091.1:ENST00000586846.2:ENST00000448136.5:ENST00000668511.1:ENST00000590435.5:ENST00000587838.2	lncRNA	lncRNA	lncRNA	lncRNA	19	468	2	2.2589	2.929065	3.59923	3.52102e-4	1.01886e-5	0.0167623	0.00248543
chr3	47190887	47190986	1418348	0	+	0.414141	(0.408,0.44]	chr3	148980	135	INTRON	INTRON	KIF9-AS1	ENSG00000227398.5	ENST00000429315.3	lncRNA	lncRNA	lncRNA	lncRNA	2	46	2	2.89795	2.92901	2.96007	0.0110735	0.00753901	0.0873897	0.0773151
chr9	137558105	137558203	4377408	0	-	0.428571	(0.408,0.44]	chr9	403627	9	INTRON	INTRON	DPH7	ENSG00000148399.13	ENST00000277540.7:ENST00000479650.5:ENST00000467243.5:ENST00000497237.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	46	2	2.89795	2.92901	2.96007	0.0110735	0.00753901	0.0873897	0.0773151
chr19	4392285	4392383	7120046	0	-	0.489796	(0.476,0.515]	chr19	716287	18	INTRON	INTRON	SH3GL1	ENSG00000141985.9	ENST00000269886.7:ENST00000598564.5:ENST00000417295.6:ENST00000598219.1	protein_coding	protein_coding	protein_coding	protein_coding	2	49	2	2.23335	2.928995	3.62464	0.0634557	5.079e-4	0.177047	0.0202328
chr10	50620509	50620609	4620656	0	-	0.32	(0.28,0.32]	chr10	425458	299	INTRON	INTRON	SGMS1	ENSG00000198964.14	ENST00000429490.5:ENST00000361781.7:ENST00000619438.4:ENST00000609445.5:ENST00000608287.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	77	2	2.55521	2.92892	3.30263	0.0067419	0.0038504	0.0739405	0.0542786
chr7	121141202	121141292	3395178	0	+	0.233333	[0,0.28]	chr7	317770	2	SS5_PROX	SS5_PROX:INTRON	CPED1	ENSG00000106034.18	ENST00000310396.10:ENST00000450913.6:ENST00000423795.5	protein_coding	protein_coding	protein_coding	protein_coding	2	65	2	2.59548	2.9287900000000002	3.2621000000000002	0.0346067	0.00367113	0.136649	0.056059199999999997
chr7	140024378	140024468	3658844	0	-	0.3	(0.28,0.32]	chr7	339550	8	UTR3	UTR3:EXON_MRNA	PARP12	ENSG00000059378.13	ENST00000263549.8:ENST00000473341.5:ENST00000488726.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	57	2	2.73077	2.928785	3.1268	0.0220748	0.00508956	0.115395	0.0646039
chr3	161240451	161240545	1546389	0	+	0.319149	(0.28,0.32]	chr3	160857	13	INTRON	INTRON	NMD3	ENSG00000169251.13	ENST00000472947.5:ENST00000351193.7:ENST00000460469.1	protein_coding	protein_coding	protein_coding	protein_coding	2	57	2	2.78004	2.9287400000000003	3.07744	0.0193244	0.00604536	0.108861	0.0700813
chr10	68763389	68763489	4442710	0	+	0.5	(0.476,0.515]	chr10	409684	18	INTRON	INTRON	CCAR1	ENSG00000060339.14	ENST00000630771.2:ENST00000543719.5:ENST00000541012.5:ENST00000265872.11:ENST00000539539.5:ENST00000543229.5:ENST00000536012.5:ENST00000543225.5:ENST00000540210.5:ENST00000479143.2:ENST00000543706.1:ENST00000539250.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	200	2	2.73273	2.9286950000000003	3.12466	4.9835e-5	4.34768e-5	0.00611327	0.00532088
chr1	213204741	213204841	312245	0	+	0.46	(0.44,0.476]	chr1	35957	279	INTRON	INTRON	RPS6KC1	ENSG00000136643.12	ENST00000615329.4:ENST00000543354.5:ENST00000614059.4:ENST00000543470.5:ENST00000366960.8:ENST00000366959.4:ENST00000490299.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	73	2	2.34775	2.928645	3.50954	0.00466011	0.00116647	0.0629753	0.0312127
chr16	81463308	81463408	6405182	0	+	0.4	(0.378,0.408]	chr16	615026	174	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8	protein_coding	protein_coding	protein_coding	protein_coding	3	64	2	2.47752	2.92861	3.3797	0.0092831	0.00154501	0.0817766	0.0362716
chr7	1501279	1501372	3462661	0	-	0.247312	[0,0.28]	chr7	323927	1	INTRON	INTRON	INTS1	ENSG00000164880.16	ENST00000404767.8	protein_coding	protein_coding	protein_coding	protein_coding	2	65	2	2.89982	2.9285550000000002	2.95729	0.0158893	0.0101824	0.101453	0.089002
chr12	62536650	62536750	5151875	0	+	0.39	(0.378,0.408]	chr12	487539	1	SS3_PROX	SS3_PROX:INTRON	MON2	ENSG00000061987.16	ENST00000641654.1:ENST00000546600.5:ENST00000393630.8:ENST00000547095.5:ENST00000552738.5:ENST00000393629.6:ENST00000552115.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	85	2	2.73557	2.928535	3.1215	0.00360869	4.84777e-4	0.0533855	0.0199443
chr1	93516981	93517081	165130	0	+	0.42	(0.408,0.44]	chr1	17867	170	INTRON	INTRON	FNBP1L	ENSG00000137942.18	ENST00000271234.13:ENST00000260506.12:ENST00000370253.6	protein_coding	protein_coding	protein_coding	protein_coding	2	28	2	1.85305	2.9284499999999998	4.00385	0.0543543	0.0454568	0.182243	0.149888
chr12	56629074	56629173	5335642	0	-	0.414141	(0.408,0.44]	chr12	510086	112	INTRON	INTRON	BAZ2A	ENSG00000076108.12	ENST00000379441.7:ENST00000549884.6:ENST00000551812.5:ENST00000551959.1:ENST00000546695.5:ENST00000549506.5:ENST00000550730.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	28	2	1.85305	2.9284499999999998	4.00385	0.0543543	0.0454568	0.182243	0.149888
chr11	9177658	9177752	4908183	0	-	0.351064	(0.35,0.378]	chr11	460062	9	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	DENND5A	ENSG00000184014.9	ENST00000328194.8:ENST00000681203.1:ENST00000530780.2:ENST00000680358.1:ENST00000679999.1:ENST00000680470.1:ENST00000680599.1:ENST00000680554.1:ENST00000679745.1:ENST00000680252.1:ENST00000681425.1:ENST00000681158.1:ENST00000679460.1:ENST00000679568.1:ENST00000679446.1:ENST00000680294.1:ENST00000680742.1:ENST00000680885.1:ENST00000680576.1:ENST00000530044.5:ENST00000526707.5:ENST00000681173.1:ENST00000527896.1:ENST00000530867.2:ENST00000681915.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	170	2	2.57359	2.928425	3.28326	0.00116092	1.288e-5	0.0311846	0.00266147
chr11	77717111	77717211	4994932	0	-	0.4	(0.378,0.408]	chr11	472017	137	INTRON	INTRON	RSF1	ENSG00000048649.14	ENST00000308488.11:ENST00000526324.5:ENST00000528095.5:ENST00000534794.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	65	2	2.63057	2.92828	3.22599	0.0053733	0.00288652	0.0642754	0.0494641
chr21	42909419	42909519	7411499	0	+	0.43	(0.408,0.44]	chr21	755313	5	UTR3	UTR3:EXON_MRNA	NDUFV3	ENSG00000160194.18	ENST00000340344.4:ENST00000354250.7	protein_coding	protein_coding	protein_coding	protein_coding	3	62	2	2.21857	2.92821	3.63785	0.0209591	4.70012e-4	0.112046	0.0196294
chr6	147222257	147222357	2988886	0	+	0.37	(0.35,0.378]	chr6	280001	158	INTRON	INTRON	STXBP5	ENSG00000164506.15	ENST00000321680.11:ENST00000367481.7:ENST00000546097.5:ENST00000367480.7	protein_coding	protein_coding	protein_coding	protein_coding	5	108	2	2.66007	2.928135	3.1962	0.00123668	5.54078e-4	0.0326427	0.0216641
chr11	108052359	108052459	4856168	0	+	0.51	(0.476,0.515]	chr11	452890	3	SS3_PROX	SS3_PROX:INTRON	CUL5	ENSG00000166266.14	ENST00000393094.7:ENST00000532064.5:ENST00000531427.5:ENST00000532782.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	61	2	2.31726	2.928105	3.53895	0.015077	0.00075485700000000005	0.0994339	0.0251966
chr5	140409558	140409658	2502903	0	+	0.55	(0.515,0.57]	chr5	239166	69	INTRON	INTRON	ANKHD1	ENSG00000131503.21	ENST00000297183.10:ENST00000616482.4:ENST00000360839.7:ENST00000421134.5:ENST00000394723.7:ENST00000511151.5:ENST00000394722.7	protein_coding	protein_coding	protein_coding	protein_coding	5	87	2	2.41022	2.92807	3.44592	0.00332441	8.97344e-5	0.0528673	0.00844245
chr7	130131737	130131836	3414218	0	+	0.464646	(0.44,0.476]	chr7	319162	11	UTR3	UTR3:EXON_MRNA	KLHDC10	ENSG00000128607.14	ENST00000335420.10	protein_coding	protein_coding	protein_coding	protein_coding	4	82	2	2.63508	2.9280299999999997	3.22098	0.00501007	2.82213e-4	0.0618077	0.0149966
chr17	1453882	1453982	6699948	0	-	0.56	(0.515,0.57]	chr17	655571	164	INTRON	INTRON	CRK	ENSG00000167193.8	ENST00000398970.5:ENST00000300574.3:ENST00000574295.1:ENST00000572145.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	33	2	1.56681	2.92801	4.28921	0.064862	0.00990051	0.179394	0.0877296
chr19	947107	947207	6992701	0	+	0.64	(0.57,1]	chr19	692392	140	INTRON	INTRON	ARID3A	ENSG00000116017.11	ENST00000263620.8:ENST00000587532.5:ENST00000457152.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	40	2	2.1643	2.92799	3.69168	0.00941704	2.1608e-4	0.0861183	0.0134537
chr3	185667265	185667364	1884758	0	-	0.434343	(0.408,0.44]	chr3	188520	85	INTRON	INTRON	IGF2BP2	ENSG00000073792.16	ENST00000382199.7:ENST00000346192.7:ENST00000457616.6:ENST00000421047.3:ENST00000494906.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	62	2	2.49218	2.92798	3.36378	0.00855168	0.0016048	0.0780217	0.0367961
chr12	91496516	91496616	5384181	0	-	0.36	(0.35,0.378]	chr12	513479	968	INTRON	INTRON	ENSG00000289605	ENSG00000289605.1	ENST00000685093.1	lncRNA	lncRNA	lncRNA	lncRNA	2	50	2	2.53856	2.9279599999999997	3.31736	0.0326077	0.00211072	0.133687	0.0425419
chr1	35344741	35344840	69050	0	+	0.363636	(0.35,0.378]	chr1	8729	190	INTRON	INTRON	ZMYM4	ENSG00000146463.12	ENST00000314607.11:ENST00000441447.1	protein_coding	protein_coding	protein_coding	protein_coding	3	37	2	1.76773	2.9279450000000002	4.08816	0.046021	0.0373863	0.155878	0.149888
chr10	74076374	74076472	4455293	0	+	0.530612	(0.515,0.57]	chr10	411422	16	EXON_LNCRNA	EXON_LNCRNA:INTRON	VCL	ENSG00000035403.18	ENST00000623461.3:ENST00000372755.7:ENST00000624354.3:ENST00000211998.10:ENST00000478896.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	96	2	2.69542	2.927895	3.16037	4.09074e-4	3.15632e-4	0.0185763	0.0159645
chr11	74252115	74252215	4827347	0	+	0.53	(0.515,0.57]	chr11	450517	4	SS5_PROX	SS5_PROX:INTRON	PPME1	ENSG00000214517.10	ENST00000328257.13:ENST00000398427.6:ENST00000543525.3:ENST00000541340.5:ENST00000538501.5:ENST00000539021.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	96	2	2.69542	2.927895	3.16037	4.09074e-4	3.15632e-4	0.0185763	0.0159645
chr7	141752281	141752381	3440243	0	+	0.23	[0,0.28]	chr7	320701	15	INTRON	INTRON	SSBP1	ENSG00000106028.11	ENST00000465582.5	protein_coding	protein_coding	protein_coding	protein_coding	5	60	2	1.47169	2.92778	4.38387	0.0501911	0.0479607	0.171039	0.156383
chr14	35024557	35024655	5691473	0	+	0.285714	(0.28,0.32]	chr14	541316	11	INTRON	INTRON	SRP54	ENSG00000100883.13	ENST00000556994.5:ENST00000678836.1:ENST00000546080.6:ENST00000555746.6:ENST00000678963.1:ENST00000678477.1:ENST00000677621.1:ENST00000678519.1:ENST00000678627.1:ENST00000216774.11:ENST00000555557.5:ENST00000678274.1:ENST00000677647.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	47	2	1.51776	2.927705	4.33765	0.0528371	0.039714	0.178899	0.143072
chr6	87225433	87225533	2913964	0	+	0.29	(0.28,0.32]	chr6	275311	16	INTRON	INTRON	ZNF292	ENSG00000188994.13	ENST00000369577.8:ENST00000518845.1:ENST00000339907.8:ENST00000496806.2	protein_coding	protein_coding	protein_coding	protein_coding	4	94	2	2.20515	2.927655	3.65016	0.011946	6.39301e-4	0.0899583	0.0228666
chr22	49537473	49537573	7601454	0	-	0.48	(0.476,0.515]	chr22	778566	959	INTRON	INTRON	MIR3667HG	ENSG00000188511.13	ENST00000414287.5:ENST00000416411.1	lncRNA	lncRNA	lncRNA	lncRNA	3	37	2	1.52615	2.92765	4.32915	0.0739267	0.0124637	0.190914	0.0973643
chr9	96963781	96963881	4298490	0	-	0.5	(0.476,0.515]	chr9	395256	45	INTRON	INTRON	MFSD14C	ENSG00000196312.15	ENST00000647176.1:ENST00000645073.1:ENST00000637076.1:ENST00000637099.1:ENST00000637864.1:ENST00000652726.1:ENST00000637811.1:ENST00000650909.1	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript:transcribed_unprocessed_pseudogene	3	37	2	1.52615	2.92765	4.32915	0.0739267	0.0124637	0.190914	0.0973643
chr8	126241915	126242015	4051051	0	-	0.47	(0.44,0.476]	chr8	369353	1285	INTRON	INTRON	LINC00861	ENSG00000245164.9	ENST00000651482.1	lncRNA	lncRNA	lncRNA	lncRNA	4	78	2	1.87325	2.9275450000000003	3.98184	0.0265709	1.34748e-4	0.134088	0.0106044
chr1	65420936	65421033	137185	0	+	0.701031	(0.57,1]	chr1	15466	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	LEPROT:LEPR	ENSG00000213625.9:ENSG00000116678.20	ENST00000475108.5:ENST00000371060.7:ENST00000371059.7:ENST00000349533.11:ENST00000371065.9:ENST00000497874.5:ENST00000488747.5:ENST00000484243.1:ENST00000613538.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	59	2	2.64588	2.927525	3.20917	3.49647e-4	2.02775e-4	0.0166791	0.0129814
chr10	68464474	68464573	4639694	0	-	0.525253	(0.515,0.57]	chr10	426716	49	INTRON	INTRON	DNA2	ENSG00000138346.15	ENST00000358410.8:ENST00000551118.6:ENST00000399179.6:ENST00000399180.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	84	2	2.86184	2.9275	2.99316	9.21623e-4	3.55958e-4	0.0278396	0.0168968
chr2	31984392	31984492	1090855	0	-	0.36	(0.35,0.378]	chr2	116913	212	INTRON	INTRON	MEMO1:DPY30	ENSG00000162959.14:ENSG00000162961.14	ENST00000295065.9:ENST00000446765.5:ENST00000404530.6:ENST00000490459.5:ENST00000426310.6:ENST00000413686.1:ENST00000407893.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	50	2	2.86451	2.9274750000000003	2.99044	0.0109111	0.00894806	0.0923273	0.0799922
chr9	130852167	130852267	4215247	0	+	0.37	(0.35,0.378]	chr9	386432	163	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000393293.4:ENST00000318560.6	protein_coding	protein_coding	protein_coding	protein_coding	2	50	2	2.86451	2.9274750000000003	2.99044	0.0109111	0.00894806	0.0923273	0.0799922
chr16	70412567	70412666	6511199	0	-	0.474747	(0.44,0.476]	chr16	630689	111	INTRON	INTRON	ST3GAL2	ENSG00000157350.13	ENST00000342907.3:ENST00000566097.1:ENST00000561708.1:ENST00000567586.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	99	2	2.6062	2.927455	3.24871	0.00148054	3.52936e-4	0.0353633	0.0174637
chr1	229556450	229556548	653751	0	-	0.459184	(0.44,0.476]	chr1	77488	67	INTRON	INTRON	ABCB10	ENSG00000135776.5	ENST00000344517.5	protein_coding	protein_coding	protein_coding	protein_coding	8	110	2	2.0432	2.927105	3.81101	0.00226364	3.0729e-4	0.0437013	0.0161362
chr21	37101742	37101842	7405125	0	+	0.34	(0.32,0.35]	chr21	754591	5	INTRON	INTRON	TTC3	ENSG00000182670.14	ENST00000492275.6:ENST00000418766.6:ENST00000485402.5:ENST00000450533.6:ENST00000438055.5:ENST00000696812.1:ENST00000696811.1:ENST00000463216.6:ENST00000481605.6:ENST00000540756.5:ENST00000494243.5:ENST00000411496.2:ENST00000399017.6:ENST00000354749.6:ENST00000479930.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	118	2	2.02531	2.9270750000000003	3.82884	0.00401813	4.19685e-4	0.0578189	0.018968
chr6	149600702	149600800	3245637	0	-	0.397959	(0.378,0.408]	chr6	301563	20	INTRON	INTRON	KATNA1	ENSG00000186625.14	ENST00000335643.12:ENST00000367411.7:ENST00000335647.9:ENST00000494504.5:ENST00000481905.5:ENST00000470620.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	32	2	1.76032	2.927055	4.09379	0.0721577	0.023912	0.187433	0.129075
chr17	46127434	46127534	6784210	0	-	0.45	(0.44,0.476]	chr17	669216	62	INTRON	INTRON	KANSL1	ENSG00000120071.15	ENST00000574590.6:ENST00000572904.6:ENST00000432791.7:ENST00000575318.6:ENST00000638275.1:ENST00000262419.10:ENST00000648792.1:ENST00000639531.1:ENST00000639150.1:ENST00000639853.1:ENST00000571698.2:ENST00000639375.1:ENST00000638269.1:ENST00000576248.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	102	2	1.74385	2.927035	4.11022	0.0119796	7.0223e-5	0.0962115	0.00749221
chr15	57119032	57119132	6034123	0	+	0.36	(0.35,0.378]	chr15	574697	2	INTRON	INTRON	TCF12	ENSG00000140262.18	ENST00000438423.6:ENST00000267811.9:ENST00000333725.10:ENST00000560190.5:ENST00000559609.5:ENST00000557843.5:ENST00000557947.5:ENST00000561152.1:ENST00000561346.5:ENST00000559216.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	51	2	2.72498	2.927015	3.12905	0.0168499	0.00566312	0.11068	0.0653997
chr6	53347219	53347318	3108173	0	-	0.313131	(0.28,0.32]	chr6	291051	100	INTRON	INTRON	ELOVL5	ENSG00000012660.14	ENST00000370918.8:ENST00000542638.5:ENST00000304434.11:ENST00000485336.5:ENST00000465983.5:ENST00000486973.1:ENST00000370913.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	108	2	2.33381	2.9268549999999998	3.5199	0.0174951	8.86821e-5	0.104863	0.00792076
chr16	75018467	75018567	6389613	0	+	0.34	(0.32,0.35]	chr16	614482	157	INTRON	INTRON	ZNRF1	ENSG00000186187.12	ENST00000335325.9:ENST00000320619.10:ENST00000567962.5:ENST00000566250.5:ENST00000564320.1:ENST00000568511.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	53	2	2.57263	2.92685	3.28107	0.0312297	0.00262488	0.13151	0.0470772
chr18	57565255	57565354	6980253	0	-	0.414141	(0.408,0.44]	chr18	690603	19	INTRON	INTRON	FECH	ENSG00000066926.13	ENST00000262093.11:ENST00000652755.1:ENST00000651787.1:ENST00000382873.8:ENST00000585494.5:ENST00000682485.1:ENST00000592699.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	31	2	1.74775	2.926845	4.10594	0.0735403	0.0219367	0.190238	0.123836
chr2	191948635	191948735	962026	0	+	0.41	(0.408,0.44]	chr2	104337	252	INTRON	INTRON	CAVIN2-AS1	ENSG00000233766.8	ENST00000424116.7:ENST00000428980.6	lncRNA	lncRNA	lncRNA	lncRNA	2	31	2	1.74775	2.926845	4.10594	0.0735403	0.0219367	0.190238	0.123836
chr3	87848213	87848313	1455567	0	+	0.42	(0.408,0.44]	chr3	153149	257	INTRON	INTRON	HTR1F	ENSG00000179097.7	ENST00000319595.7	protein_coding	protein_coding	protein_coding	protein_coding	2	31	2	1.74775	2.926845	4.10594	0.0735403	0.0219367	0.190238	0.123836
chr6	35892420	35892518	3088537	0	-	0.438776	(0.408,0.44]	chr6	288887	10	INTRON	INTRON	SRPK1	ENSG00000096063.16	ENST00000373825.7:ENST00000423325.6:ENST00000346162.10:ENST00000361690.7:ENST00000510290.5:ENST00000373821.6:ENST00000508473.5:ENST00000512445.5:ENST00000513367.1:ENST00000507909.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	31	2	1.74775	2.926845	4.10594	0.0735403	0.0219367	0.190238	0.123836
chr13	41225040	41225139	5578148	0	-	0.494949	(0.476,0.515]	chr13	533237	13	INTRON	INTRON	MTRF1	ENSG00000120662.16	ENST00000379480.9:ENST00000379477.5:ENST00000473492.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	62	2	2.32001	2.926815	3.53362	0.0136217	0.00102391	0.101682	0.029231300000000002
chrX	154692721	154692821	7914728	0	-	0.48	(0.476,0.515]	chrX	806068	121	INTRON	INTRON	GAB3	ENSG00000160219.12	ENST00000496390.5:ENST00000424127.3:ENST00000369575.7:ENST00000369568.8:ENST00000475685.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	65	2	2.90668	2.9268	2.94692	0.00794331	0.00164243	0.0797304	0.0369207
chr12	123393189	123393286	5242669	0	+	0.298969	(0.28,0.32]	chr12	498191	14	INTRON	INTRON	KMT5A	ENSG00000183955.14	ENST00000402868.8:ENST00000437519.5:ENST00000478781.6:ENST00000461103.5:ENST00000437502.1:ENST00000485469.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	40	2	1.61031	2.926755	4.2432	0.0600513	0.0479043	0.190658	0.153019
chr19	58555993	58556088	7218479	0	-	0.663158	(0.57,1]	chr19	733396	4	UTR3	UTR3:EXON_MRNA	UBE2M	ENSG00000130725.8	ENST00000253023.8	protein_coding	protein_coding	protein_coding	protein_coding	14	130	2	2.45527	2.9267250000000002	3.39818	5.23687e-5	4.60347e-7	0.00590498	3.89551e-4
chr3	5128884	5128984	1353641	0	+	0.29	(0.28,0.32]	chr3	142360	3	SS5_PROX	SS5_PROX:INTRON	ARL8B	ENSG00000134108.14	ENST00000429403.5:ENST00000256496.8:ENST00000455168.5:ENST00000444332.1:ENST00000419534.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	106	2	2.36128	2.92663	3.49198	0.0025684	0.00195595	0.0466761	0.0400756
chr17	32350852	32350907	6597980	0	+	0.581818	(0.57,1]	chr17	641877	1	INTRON	INTRON	ZNF207	ENSG00000010244.19	ENST00000321233.10:ENST00000394673.6:ENST00000394670.9:ENST00000579634.5:ENST00000580759.5:ENST00000342555.10:ENST00000577908.5:ENST00000394679.9:ENST00000582165.1:ENST00000577324.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	21	200	2	2.91562	2.9266199999999998	2.93762	1.16058e-6	2.81251e-7	6.2218e-4	2.88324e-4
chr17	50694096	50694196	6795166	0	-	0.4	(0.378,0.408]	chr17	670765	10	UTR3	UTR3:EXON_MRNA	ANKRD40	ENSG00000154945.7	ENST00000285243.7	protein_coding	protein_coding	protein_coding	protein_coding	8	142	2	2.21783	2.9265600000000003	3.63529	0.00141252	5.54165e-5	0.0345383	0.00651834
chr1	51497307	51497407	454138	0	-	0.34	(0.32,0.35]	chr1	54447	156	INTRON	INTRON	EPS15	ENSG00000085832.17	ENST00000371733.8:ENST00000371730.6:ENST00000371727.5:ENST00000471391.1:ENST00000465467.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	53	2	2.90786	2.9264799999999997	2.9451	0.011051	0.00993008	0.0877296	0.0873897
chr22	29835345	29835444	7576020	0	-	0.333333	(0.32,0.35]	chr22	775013	4	INTRON	INTRON	ASCC2	ENSG00000100325.15	ENST00000542393.5:ENST00000307790.8:ENST00000397771.6:ENST00000449900.6:ENST00000495967.5:ENST00000465667.6:ENST00000495681.5:ENST00000453160.5:ENST00000460313.1:ENST00000454854.5:ENST00000492821.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	53	2	2.90786	2.9264799999999997	2.9451	0.011051	0.00993008	0.0877296	0.0873897
chr7	75436017	75436117	3558423	0	-	0.34	(0.32,0.35]	chr7	331515	92	INTRON	INTRON	POM121C	ENSG00000272391.6	ENST00000615331.5:ENST00000607367.5:ENST00000473168.1:ENST00000439629.2:ENST00000479864.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	53	2	2.90786	2.9264799999999997	2.9451	0.011051	0.00993008	0.0877296	0.0873897
chr1	229536180	229536279	653541	0	-	0.494949	(0.476,0.515]	chr1	77458	11	INTRON	INTRON	ABCB10	ENSG00000135776.5	ENST00000344517.5	protein_coding	protein_coding	protein_coding	protein_coding	5	83	2	2.24654	2.926405	3.60627	0.00346427	7.49088e-4	0.0539802	0.0251179
chr2	70228645	70228729	1152264	0	-	0.333333	(0.32,0.35]	chr2	123089	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	C2orf42:TIA1	ENSG00000115998.8:ENSG00000116001.17	ENST00000470096.1:ENST00000415783.6:ENST00000433529.7:ENST00000282574.8:ENST00000445587.5:ENST00000454815.6:ENST00000416149.6:ENST00000474809.6:ENST00000477044.6:ENST00000361692.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	122	2	2.33471	2.926395	3.51808	0.00151238	9.111e-4	0.0352794	0.0277409
chr8	43056949	43057038	3745852	0	+	0.539326	(0.515,0.57]	chr8	348512	5	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	FNTA	ENSG00000168522.13	ENST00000533559.5:ENST00000526755.5:ENST00000302279.8:ENST00000527153.5:ENST00000533383.5:ENST00000533998.5:ENST00000524546.5:ENST00000531266.5:ENST00000533368.1:ENST00000525699.5:ENST00000529687.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	53	2	2.27238	2.926365	3.58035	0.0161808	5.21239e-4	0.101453	0.0204523
chr7	132959525	132959625	3644658	0	-	0.5	(0.476,0.515]	chr7	338848	722	INTRON	INTRON	CHCHD3	ENSG00000106554.13	ENST00000262570.10:ENST00000448878.6:ENST00000496427.5:ENST00000423635.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	83	2	2.14389	2.926355	3.70882	0.00540862	4.74495e-4	0.066545000000000007	0.0201638
chr10	48357420	48357520	4431497	0	+	0.58	(0.57,1]	chr10	408569	311	INTRON	INTRON	MAPK8	ENSG00000107643.17	ENST00000395611.7:ENST00000432379.5:ENST00000374189.6:ENST00000429041.6:ENST00000374179.8:ENST00000426557.5:ENST00000476134.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	26	2	2.53383	2.92621	3.31859	0.02547	0.00137292	0.12011	0.0340241
chr9	108933665	108933764	4310794	0	-	0.616162	(0.57,1]	chr9	396178	26	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	ELP1	ENSG00000070061.16	ENST00000675765.1:ENST00000374647.10:ENST00000675078.1:ENST00000674948.1:ENST00000676121.1:ENST00000676429.1:ENST00000674704.1:ENST00000674938.1:ENST00000675602.1:ENST00000675215.1:ENST00000676044.1:ENST00000675979.1:ENST00000675325.1:ENST00000495759.6:ENST00000675893.1:ENST00000675943.1:ENST00000675535.1:ENST00000674890.1:ENST00000675233.1:ENST00000676086.1:ENST00000674836.1:ENST00000675406.1:ENST00000675748.1:ENST00000675400.1:ENST00000676237.1:ENST00000675825.1:ENST00000676424.1:ENST00000675647.1:ENST00000675877.1:ENST00000676416.1:ENST00000675052.1:ENST00000674535.1:ENST00000537196.1:ENST00000675566.1:ENST00000675507.1:ENST00000675727.1:ENST00000675938.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	26	2	2.53383	2.92621	3.31859	0.02547	0.00137292	0.12011	0.0340241
chr21	28991080	28991178	7436680	0	-	0.489796	(0.476,0.515]	chr21	758446	38	INTRON	INTRON	LTN1	ENSG00000198862.14	ENST00000614971.4:ENST00000389194.7:ENST00000361371.10:ENST00000389195.7	protein_coding	protein_coding	protein_coding	protein_coding	3	62	2	2.66112	2.926155	3.19119	0.0044598	0.00325748	0.0592169	0.0524329
chr1	245893253	245893353	674556	0	-	0.38	(0.378,0.408]	chr1	79681	290	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000366517.5:ENST00000366516.5:ENST00000490107.6:ENST00000470510.5:ENST00000493441.5:ENST00000488153.5:ENST00000492487.5:ENST00000391836.3:ENST00000464398.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	39	2	1.53052	2.92613	4.32174	0.0744544	0.0132362	0.192012	0.0999551
chr2	73216707	73216804	808177	0	+	0.402062	(0.378,0.408]	chr2	90361	16	INTRON	INTRON	SMYD5	ENSG00000135632.12	ENST00000413491.5:ENST00000258100.8:ENST00000389501.9:ENST00000629411.2:ENST00000443900.1:ENST00000474652.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	33	2	1.88729	2.926	3.96471	0.0532327	0.032421	0.162538	0.145026
chr21	6662061	6662160	7425794	0	-	0.393939	(0.378,0.408]	chr21	757499	21	INTRON	INTRON	ENSG00000280145	ENSG00000280145.3	ENST00000625185.3:ENST00000624846.3:ENST00000623313.1:ENST00000624965.1	lncRNA	lncRNA	lncRNA	lncRNA	3	63	2	2.70298	2.9259500000000003	3.14892	0.00499984	0.00325723	0.0617433	0.0524329
chr9	132292409	132292507	4366528	0	-	0.193878	[0,0.28]	chr9	401432	34	INTRON	INTRON	SETX	ENSG00000107290.14	ENST00000224140.6:ENST00000436441.5	protein_coding	protein_coding	protein_coding	protein_coding	4	120	2	2.51584	2.925945	3.33605	0.0115397	3.05093e-4	0.0889104	0.0155972
chr15	64526051	64526151	6044744	0	+	0.39	(0.378,0.408]	chr15	575696	231	INTRON	INTRON	ZNF609	ENSG00000180357.10	ENST00000326648.5:ENST00000558680.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	63	2	2.65815	2.925915	3.19368	0.00426861	0.00391167	0.0573912	0.0569957
chr6	43623139	43623233	3097527	0	-	0.521277	(0.515,0.57]	chr6	290163	3	EXON_LNCRNA	EXON_LNCRNA:SS3_PROX:INTRON	GTPBP2	ENSG00000172432.19	ENST00000307114.11:ENST00000476510.5:ENST00000307126.10:ENST00000459959.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	190	2	2.55037	2.92575	3.30113	1.47694e-4	2.21273e-6	0.0111067	9.31893e-4
chr1	26549626	26549723	50863	0	+	0.350515	(0.35,0.378]	chr1	6439	20	INTRON	INTRON	RPS6KA1	ENSG00000117676.14	ENST00000374168.7:ENST00000526040.6:ENST00000524436.5:ENST00000374166.8:ENST00000526792.5:ENST00000529454.5:ENST00000530003.5:ENST00000366866.8:ENST00000531113.5:ENST00000374163.5:ENST00000530607.1:ENST00000531382.5:ENST00000527264.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	66	2	2.67874	2.9255899999999997	3.17244	0.00487788	0.00373022	0.0607461	0.0561984
chr8	129525072	129525172	4060533	0	-	0.34	(0.32,0.35]	chr8	369648	145	INTRON	INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1:ENST00000676273.1:ENST00000667643.1:ENST00000668791.1:ENST00000663716.1:ENST00000663572.1:ENST00000676148.1:ENST00000667962.1:ENST00000674877.1:ENST00000675316.1:ENST00000674656.1:ENST00000446592.7:ENST00000667341.1:ENST00000675186.1:ENST00000652971.1:ENST00000661447.1:ENST00000674863.1:ENST00000675498.1:ENST00000675527.1:ENST00000676108.1:ENST00000657647.1:ENST00000675589.1:ENST00000675913.1:ENST00000675109.1:ENST00000671632.1:ENST00000671311.1:ENST00000676099.1:ENST00000660652.1:ENST00000675522.1:ENST00000675183.1:ENST00000658861.1:ENST00000663991.1:ENST00000675044.1:ENST00000675435.1:ENST00000674639.1:ENST00000676069.1:ENST00000675532.1:ENST00000674762.1:ENST00000523151.6:ENST00000675948.1:ENST00000665364.1:ENST00000657251.1:ENST00000675166.1:ENST00000674883.1:ENST00000675867.1:ENST00000674580.1:ENST00000675393.1:ENST00000520048.1:ENST00000674906.1:ENST00000676030.1:ENST00000670588.1:ENST00000675072.1:ENST00000664936.1:ENST00000652914.1:ENST00000657069.1	lncRNA	lncRNA	lncRNA	lncRNA	13	267	2	2.48878	2.925565	3.36235	1.30579e-4	2.51771e-5	0.00983473	0.00413544
chr20	50561853	50561953	7286429	0	+	0.6	(0.57,1]	chr20	741246	4	SS5_PROX	SS5_PROX:INTRON	PTPN1	ENSG00000196396.10	ENST00000541713.5:ENST00000371621.5	protein_coding	protein_coding	protein_coding	protein_coding	2	26	2	2.66801	2.9255050000000002	3.183	0.0169968	0.00254356	0.110899	0.0448135
chr12	121312202	121312302	5436762	0	-	0.4	(0.378,0.408]	chr12	519847	18	INTRON	INTRON	ANAPC5	ENSG00000089053.13	ENST00000261819.8:ENST00000535641.5:ENST00000541887.5:ENST00000534976.5:ENST00000441917.6:ENST00000539079.5:ENST00000544314.5:ENST00000535482.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	97	2	1.88928	2.92531	3.96134	0.00958693	1.71065e-4	0.0866052	0.0119955
chrX	19357051	19357151	7629329	0	+	0.46	(0.44,0.476]	chrX	781199	9	INTRON	INTRON	PDHA1	ENSG00000131828.14	ENST00000540249.5:ENST00000696704.1:ENST00000696705.1:ENST00000422285.7:ENST00000423505.6:ENST00000355808.10:ENST00000379805.4:ENST00000417819.6:ENST00000481733.2:ENST00000379804.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	61	2	2.49823	2.92525	3.35227	0.00718224	0.0022005699999999998	0.0756118	0.0417893
chr11	47988307	47988407	4789296	0	+	0.34	(0.32,0.35]	chr11	443265	69	INTRON	INTRON	PTPRJ	ENSG00000149177.14	ENST00000418331.7:ENST00000440289.6:ENST00000527952.1:ENST00000534219.5	protein_coding	protein_coding	protein_coding	protein_coding	3	71	2	2.49929	2.925225	3.35116	0.00776612	0.00283808	0.0787356	0.0473151
chr15	68817913	68818012	6214948	0	-	0.747475	(0.57,1]	chr15	593032	3	INTRON	INTRON	ANP32A	ENSG00000140350.15	ENST00000465139.6:ENST00000409628.6:ENST00000560303.1:ENST00000495420.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	35	2	2.91889	2.9251950000000004	2.9315	0.00719009	9.1984e-4	0.0756118	0.0278396
chr5	69908675	69908775	2382089	0	+	0.53	(0.515,0.57]	chr5	229544	330	INTRON	INTRON	GUSBP13	ENSG00000198237.8	ENST00000506490.2	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	5	84	2	2.54372	2.92518	3.30664	0.00205444	1.4883e-4	0.0409693	0.0105921
chr5	34937730	34937830	2337444	0	+	0.29	(0.28,0.32]	chr5	225750	1	SS5_PROX	SS5_PROX:INTRON	DNAJC21	ENSG00000168724.17	ENST00000648817.1:ENST00000382021.2:ENST00000642851.1:ENST00000642675.1:ENST00000644357.1:ENST00000642285.1:ENST00000646714.1:ENST00000514237.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	104	2	2.84714	2.9250249999999998	3.00291	0.00310758	0.00110829	0.0498063	0.0305035
chrX	123974991	123975090	7716885	0	+	0.353535	(0.35,0.378]	chrX	789462	112	INTRON	INTRON	STAG2	ENSG00000101972.20	ENST00000394477.5:ENST00000218089.13:ENST00000455404.5:ENST00000483575.5:ENST00000687810.1:ENST00000687071.1:ENST00000469481.1:ENST00000458700.5:ENST00000371160.5:ENST00000435103.5:ENST00000687852.1:ENST00000371145.8:ENST00000692982.1:ENST00000371157.7:ENST00000691035.1:ENST00000686802.1:ENST00000691383.1:ENST00000686127.1:ENST00000371144.7:ENST00000458176.5:ENST00000466748.5:ENST00000471107.1:ENST00000428941.5:ENST00000435215.5:ENST00000394478.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	66	2	2.72093	2.92499	3.12905	0.00566312	0.00314173	0.0653997	0.0514466
chr8	100946482	100946582	4005914	0	-	0.44	(0.408,0.44]	chr8	366668	116	INTRON	INTRON	YWHAZ	ENSG00000164924.18	ENST00000395958.6:ENST00000395957.6:ENST00000457309.2:ENST00000395956.7:ENST00000353245.7:ENST00000521309.5:ENST00000522542.5:ENST00000395953.6:ENST00000395948.6:ENST00000395951.7:ENST00000419477.6:ENST00000521607.5:ENST00000480304.5:ENST00000518736.5:ENST00000517727.5:ENST00000521328.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	125	2	2.45916	2.924785	3.39041	6.48651e-4	1.80518e-4	0.0230814	0.0121877
chr22	23266069	23266165	7484068	0	+	0.427083	(0.408,0.44]	chr22	763569	12	INTRON	INTRON	BCR	ENSG00000186716.21	ENST00000359540.7:ENST00000305877.13:ENST00000427791.1	protein_coding	protein_coding	protein_coding	protein_coding	12	216	2	2.25954	2.924715	3.58989	7.94858e-4	1.21707e-6	0.0260201	6.42263e-4
chr8	30082326	30082424	3931397	0	-	0.489796	(0.476,0.515]	chr8	360100	2	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	SARAF	ENSG00000133872.14	ENST00000256255.11:ENST00000545648.2:ENST00000518174.5:ENST00000521265.5:ENST00000520303.5:ENST00000518340.1:ENST00000522794.1:ENST00000522055.1:ENST00000523761.1:ENST00000517569.1:ENST00000521083.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	83	2	2.10798	2.92471	3.74144	0.00628634	4.08784e-4	0.0722266	0.0185763
chr1	246880498	246880598	681425	0	-	0.45	(0.44,0.476]	chr1	79929	28	INTRON	INTRON	AHCTF1	ENSG00000153207.16	ENST00000648844.2:ENST00000326225.3:ENST00000366508.5:ENST00000470300.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	124	2	2.48067	2.92461	3.36855	5.78772e-4	1.94525e-4	0.0218339	0.0127418
chr16	3701530	3701630	6434315	0	-	0.4	(0.378,0.408]	chr16	619370	102	INTRON	INTRON	TRAP1	ENSG00000126602.11	ENST00000246957.10:ENST00000538171.5:ENST00000571804.5:ENST00000574941.5:ENST00000576106.5:ENST00000571011.1:ENST00000570403.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	115	2	1.48613	2.9245550000000002	4.36298	0.0288834	9.6198e-6	0.1274	0.00224473
chr1	229542771	229542871	653610	0	-	0.53	(0.515,0.57]	chr1	77475	4	SS3_PROX	SS3_PROX:INTRON	ABCB10	ENSG00000135776.5	ENST00000344517.5	protein_coding	protein_coding	protein_coding	protein_coding	14	221	2	2.76008	2.9242749999999997	3.08847	1.56323e-5	7.91252e-6	0.00298427	0.00212728
chr1	113074244	113074344	188104	0	+	0.36	(0.35,0.378]	chr1	20854	2	INTRON	INTRON	LRIG2	ENSG00000198799.12	ENST00000361127.6	protein_coding	protein_coding	protein_coding	protein_coding	4	81	2	2.71933	2.92419	3.12905	0.00566312	9.31518e-4	0.0653997	0.0278746
chr1	19211353	19211451	38688	0	+	0.469388	(0.44,0.476]	chr1	4632	4	INTRON	INTRON	EMC1-AS1	ENSG00000230424.2	ENST00000437898.2:ENST00000690421.1	lncRNA	lncRNA	lncRNA	lncRNA	4	82	2	2.9044	2.9240649999999997	2.94373	0.00143431	0.00132926	0.0340925	0.0335085
chr1	151399559	151399572	225685	0	+	0.153846	[0,0.28]	chr1	25834	1	EXON_MRNA	EXON_MRNA	PSMB4	ENSG00000159377.11	ENST00000495288.5	protein_coding	retained_intron	protein_coding	retained_intron	6	175	2	2.88506	2.924035	2.96301	8.83215e-4	6.63333e-4	0.0273034	0.0233419
chr11	9291111	9291210	4909198	0	-	0.444444	(0.44,0.476]	chr11	460149	22	INTRON	INTRON	TMEM41B	ENSG00000166471.11	ENST00000524543.5:ENST00000528080.6:ENST00000299596.8:ENST00000611268.4:ENST00000527813.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	116	2	1.93713	2.92392	3.91071	0.0138947	4.72898e-6	0.0955491	0.00146697
chr7	107909844	107909944	3379816	0	+	0.49	(0.476,0.515]	chr7	316609	31	INTRON	INTRON	DLD	ENSG00000091140.15	ENST00000417551.5:ENST00000415325.5:ENST00000440410.5:ENST00000437604.6:ENST00000205402.10:ENST00000451081.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	84	2	2.02889	2.923915	3.81894	0.00978617	1.96038e-4	0.0835427	0.0122528
chr19	40253861	40253961	7183423	0	-	0.39	(0.378,0.408]	chr19	726485	91	INTRON	INTRON	AKT2	ENSG00000105221.18	ENST00000392038.7:ENST00000424901.5:ENST00000391844.8:ENST00000584288.5:ENST00000311278.10:ENST00000579047.5:ENST00000578615.6:ENST00000601166.5:ENST00000492463.6:ENST00000537834.5:ENST00000491778.6:ENST00000487537.3:ENST00000441941.6:ENST00000672879.1:ENST00000486368.6:ENST00000596634.5:ENST00000452077.5:ENST00000392037.5:ENST00000416362.5:ENST00000578123.5:ENST00000672890.1:ENST00000423127.5:ENST00000358335.9:ENST00000456441.5:ENST00000583859.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	64	2	2.90162	2.923875	2.94613	0.0113157	0.00112461	0.0886121	0.0308177
chr9	128329334	128329432	4204110	0	+	0.367347	(0.35,0.378]	chr9	384234	31	INTRON	INTRON	COQ4	ENSG00000167113.11	ENST00000300452.8	protein_coding	protein_coding	protein_coding	protein_coding	5	112	2	2.39519	2.923795	3.4524	0.00401951	1.6322e-4	0.0578189	0.0116917
chr1	51359399	51359496	452727	0	-	0.453608	(0.44,0.476]	chr1	54293	22	INTRON	INTRON	EPS15	ENSG00000085832.17	ENST00000371733.8:ENST00000371730.6	protein_coding	protein_coding	protein_coding	protein_coding	2	46	2	2.5364	2.92375	3.3111	0.0309324	0.0020006	0.13151	0.0412555
chr17	15509668	15509767	6731924	0	-	0.484848	(0.476,0.515]	chr17	660295	23	INTRON	INTRON	TVP23C-CDRT4:TVP23C	ENSG00000259024.6:ENSG00000175106.17	ENST00000522212.6:ENST00000557349.5:ENST00000481756.7:ENST00000518506.4:ENST00000225576.7:ENST00000581273.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	81	2	2.80651	2.92374	3.04097	0.00250121	7.0601e-4	0.0446195	0.0241881
chr7	44658955	44659055	3314815	0	+	0.54	(0.515,0.57]	chr7	307918	22	INTRON	INTRON	OGDH	ENSG00000105953.16	ENST00000439616.6:ENST00000443864.6:ENST00000449767.5:ENST00000447398.5:ENST00000419661.5:ENST00000222673.6:ENST00000444676.5	protein_coding	protein_coding	protein_coding	protein_coding	3	54	2	2.7208	2.923715	3.12663	0.00374498	0.00306828	0.0562234	0.0494933
chr21	44045501	44045601	7415366	0	+	0.33	(0.32,0.35]	chr21	755795	72	INTRON	INTRON	TRAPPC10	ENSG00000160218.13	ENST00000291574.9:ENST00000380221.7:ENST00000422875.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	88	2	1.73318	2.923675	4.11417	0.0462868	5.52952e-5	0.150684	0.00609037
chr4	1993417	1993517	2095894	0	-	0.54	(0.515,0.57]	chr4	207403	9	INTRON	INTRON	NELFA	ENSG00000185049.16	ENST00000542778.5:ENST00000382882.9:ENST00000333877.8:ENST00000431323.6:ENST00000455762.5:ENST00000421397.5:ENST00000411649.3:ENST00000443203.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	70	2	2.88267	2.92367	2.96467	0.00152842	8.94279e-4	0.0353936	0.0273458
chr6	161064608	161064707	3025224	0	+	0.313131	(0.28,0.32]	chr6	282325	143	INTRON	INTRON	MAP3K4	ENSG00000085511.20	ENST00000366919.6:ENST00000392142.9:ENST00000542952.5:ENST00000366920.6:ENST00000348824.11:ENST00000544041.5:ENST00000490904.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	92	2	2.4468	2.9236050000000002	3.40041	0.0037095	0.00273088	0.0561833	0.0467642
chr9	131484185	131484285	4217897	0	+	0.6	(0.57,1]	chr9	386843	1	SS3_PROX	SS3_PROX:INTRON	PRRC2B	ENSG00000288701.1	ENST00000684596.1:ENST00000683519.1:ENST00000682501.1:ENST00000683353.1:ENST00000682662.1	protein_coding	protein_coding	protein_coding	protein_coding	5	45	2	2.0955	2.923575	3.75165	0.00622614	1.54884e-4	0.0718276	0.0113252
chr7	121205423	121205523	3395823	0	+	0.31	(0.28,0.32]	chr7	317781	554	INTRON	INTRON	CPED1	ENSG00000106034.18	ENST00000310396.10:ENST00000450913.6:ENST00000423795.5:ENST00000466055.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	57	2	2.87382	2.9235749999999996	2.97333	0.014868	0.00857834	0.0989021	0.083729
chr9	111425017	111425117	4314689	0	-	0.5	(0.476,0.515]	chr9	396781	2	SS5_PROX	SS5_PROX:INTRON	ECPAS	ENSG00000136813.15	ENST00000684092.1:ENST00000338205.9:ENST00000259335.8:ENST00000602447.5	protein_coding	protein_coding	protein_coding	protein_coding	7	134	2	2.84608	2.923455	3.00083	6.05245e-4	6.46875e-5	0.0226059	0.00666922
chr10	5817285	5817385	4544963	0	-	0.34	(0.32,0.35]	chr10	419822	23	INTRON	INTRON	GDI2	ENSG00000057608.17	ENST00000380127.5	protein_coding	protein_coding	protein_coding	protein_coding	2	56	2	2.23182	2.923445	3.61507	0.068598	6.48785e-4	0.184298	0.0230814
chr7	23467671	23467771	3503639	0	-	0.38	(0.378,0.408]	chr7	326912	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	IGF2BP3	ENSG00000136231.14	ENST00000258729.8:ENST00000421467.6:ENST00000468263.5:ENST00000491719.5:ENST00000476938.5:ENST00000468005.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	96	2	2.07903	2.9233849999999997	3.76774	0.00428711	4.21442e-4	0.0599065	0.0189827
chr7	157190881	157190980	3454471	0	+	0.50505	(0.476,0.515]	chr7	322957	17	INTRON	INTRON	UBE3C	ENSG00000009335.18	ENST00000348165.10	protein_coding	protein_coding	protein_coding	protein_coding	8	135	2	2.45188	2.923265	3.39465	3.94592e-4	1.63554e-4	0.0178567	0.0116917
chr1	6583280	6583376	5345	0	+	0.447917	(0.44,0.476]	chr1	1034	6	INTRON	INTRON	ZBTB48	ENSG00000204859.13	ENST00000377674.9:ENST00000488936.1	protein_coding	protein_coding	protein_coding	protein_coding	2	46	2	2.81896	2.923235	3.02751	0.0120766	0.00715968	0.0962311	0.0723634
chr1	86922196	86922296	153668	0	+	0.28	[0,0.28]	chr1	16952	60	INTRON	INTRON	HS2ST1	ENSG00000153936.18	ENST00000370550.10:ENST00000370551.8:ENST00000687893.1:ENST00000693745.1:ENST00000689904.1:ENST00000690674.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	65	2	2.90797	2.923235	2.9385	0.0142776	0.0118539	0.0963703	0.0962115
chr10	97745315	97745415	4505372	0	+	0.46	(0.44,0.476]	chr10	414789	4	SS5_PROX	SS5_PROX:INTRON	ZFYVE27	ENSG00000155256.18	ENST00000337540.11:ENST00000370613.7:ENST00000370610.7:ENST00000357540.8:ENST00000393677.8:ENST00000423811.3:ENST00000684270.1:ENST00000359980.5	protein_coding	protein_coding	protein_coding	protein_coding	2	46	2	2.81896	2.923235	3.02751	0.0120766	0.00715968	0.0962311	0.0723634
chr10	125140648	125140747	4714144	0	-	0.444444	(0.44,0.476]	chr10	434933	25	INTRON	INTRON	CTBP2	ENSG00000175029.17	ENST00000337195.9:ENST00000411419.6:ENST00000494626.6:ENST00000531469.5:ENST00000460976.5:ENST00000476817.1:ENST00000530884.1:ENST00000467395.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	46	2	2.81896	2.923235	3.02751	0.0120766	0.00715968	0.0962311	0.0723634
chr11	68920951	68921050	4819197	0	+	0.444444	(0.44,0.476]	chr11	449187	27	INTRON	INTRON	IGHMBP2	ENSG00000132740.10	ENST00000675615.1:ENST00000676228.1:ENST00000255078.8:ENST00000676173.1:ENST00000674955.1:ENST00000675118.1:ENST00000675305.1:ENST00000675648.1:ENST00000674775.1:ENST00000675684.1:ENST00000675493.1:ENST00000674745.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	46	2	2.81896	2.923235	3.02751	0.0120766	0.00715968	0.0962311	0.0723634
chr16	81512989	81513089	6405681	0	+	0.47	(0.44,0.476]	chr16	615031	171	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6	protein_coding	protein_coding	protein_coding	protein_coding	2	46	2	2.81896	2.923235	3.02751	0.0120766	0.00715968	0.0962311	0.0723634
chr3	47058378	47058475	1680518	0	-	0.463918	(0.44,0.476]	chr3	171507	5	INTRON	INTRON	SETD2	ENSG00000181555.22	ENST00000691544.1:ENST00000638947.2:ENST00000686876.1:ENST00000687657.1:ENST00000431180.5:ENST00000409792.4:ENST00000330022.11:ENST00000686773.1:ENST00000685005.1:ENST00000690461.1:ENST00000685505.1:ENST00000692883.1:ENST00000693321.1:ENST00000688290.1:ENST00000691902.1:ENST00000690157.1:ENST00000692362.1:ENST00000685237.1:ENST00000693738.1:ENST00000686792.1:ENST00000445387.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	46	2	2.81896	2.923235	3.02751	0.0120766	0.00715968	0.0962311	0.0723634
chr12	120171112	120171209	5433008	0	-	0.43299	(0.408,0.44]	chr12	519278	4	INTRON	INTRON	GCN1	ENSG00000089154.11	ENST00000300648.7	protein_coding	protein_coding	protein_coding	protein_coding	3	62	2	2.16746	2.92316	3.67886	0.024436	3.86173e-4	0.12011	0.017761
chr7	100680467	100680563	3587379	0	-	0.572917	(0.57,1]	chr7	334564	11	UTR3	UTR3:EXON_MRNA	GIGYF1	ENSG00000146830.11	ENST00000678049.1:ENST00000646601.1:ENST00000275732.5	protein_coding	protein_coding	protein_coding	protein_coding	8	81	2	2.73461	2.92316	3.11171	2.02023e-4	1.56095e-5	0.0124395	0.0031803
chr22	17038437	17038536	7474360	0	+	0.333333	(0.32,0.35]	chr22	762034	7	INTRON	INTRON	CECR7	ENSG00000237438.7	ENST00000441006.5:ENST00000414401.5:ENST00000609932.5:ENST00000609596.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	3	72	2	2.5652	2.9231350000000003	3.28107	0.00765724	0.00262488	0.075364	0.0470772
chr7	158885305	158885399	3456422	0	+	0.361702	(0.35,0.378]	chr7	323167	3	INTRON	INTRON	DYNC2I1	ENSG00000126870.16	ENST00000407559.8:ENST00000444851.5:ENST00000467220.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	66	2	2.76192	2.923115	3.08431	0.0065853	0.00265021	0.0701901	0.0474328
chr2	241335707	241335774	1053819	0	+	0.253731	[0,0.28]	chr2	112230	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SEPTIN2	ENSG00000168385.18	ENST00000391973.6:ENST00000428282.5:ENST00000492978.5:ENST00000360051.7:ENST00000407017.5:ENST00000469434.5:ENST00000616972.4:ENST00000495463.5:ENST00000475474.5:ENST00000401990.5:ENST00000469175.5:ENST00000407971.5:ENST00000457335.5:ENST00000436795.5:ENST00000494824.5:ENST00000411484.5:ENST00000462147.5:ENST00000434955.5:ENST00000466211.5:ENST00000391971.7:ENST00000402092.6:ENST00000473479.5:ENST00000464128.5:ENST00000467971.5:ENST00000425899.5:ENST00000443492.5:ENST00000437066.5:ENST00000475823.5:ENST00000449239.5:ENST00000366210.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	88	2	2.39991	2.92301	3.44611	0.0163416	0.00185186	0.101571	0.039946
chr9	128695339	128695435	4206862	0	+	0.354167	(0.35,0.378]	chr9	385018	8	UTR3	UTR3:EXON_MRNA	SET	ENSG00000119335.18	ENST00000686840.1:ENST00000372692.8:ENST00000691158.1:ENST00000322030.13:ENST00000480536.2:ENST00000685073.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	66	2	2.59046	2.922975	3.25549	0.00528327	0.00363602	0.0656295	0.0535085
chr4	2561434	2561534	1912764	0	+	0.43	(0.408,0.44]	chr4	191976	239	INTRON	INTRON	RNF4:FAM193A	ENSG00000063978.16:ENSG00000125386.16	ENST00000508235.1:ENST00000637812.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	61	2	2.73941	2.92291	3.10641	0.00555646	0.002744	0.0648867	0.0484022
chr1	182867543	182867642	273276	0	+	0.494949	(0.476,0.515]	chr1	31933	1	INTRON	INTRON	DHX9	ENSG00000135829.17	ENST00000367549.4	protein_coding	protein_coding	protein_coding	protein_coding	11	165	2	1.87171	2.922885	3.97406	0.00310398	6.18064e-6	0.0512344	0.00186272
chr2	131064372	131064472	1228800	0	-	0.42	(0.408,0.44]	chr2	130981	83	INTRON	INTRON	FAM168B	ENSG00000152102.18	ENST00000389915.4:ENST00000409185.5	protein_coding	protein_coding	protein_coding	protein_coding	2	46	2	2.58624	2.92286	3.25948	0.0273686	0.00246454	0.123904	0.0459102
chr15	27278013	27278113	5985225	0	+	0.41	(0.408,0.44]	chr15	569169	60	INTRON	INTRON	GABRG3	ENSG00000182256.13	ENST00000615808.5:ENST00000555083.5:ENST00000554786.1:ENST00000554696.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	62	2	2.53313	2.92285	3.31257	0.00739595	0.00198621	0.074277	0.0411469
chr9	130794253	130794353	4214667	0	+	0.32	(0.28,0.32]	chr9	386427	794	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000393293.4	protein_coding	protein_coding	protein_coding	protein_coding	9	221	2	2.77773	2.92274	3.06775	1.7312e-4	1.63418e-4	0.0116917	0.0114086
chr8	125942891	125942991	3859294	0	+	0.31	(0.28,0.32]	chr8	355334	2	SS5_PROX	SS5_PROX:INTRON	ENSG00000286122	ENSG00000286122.1	ENST00000651999.1:ENST00000652177.1	lncRNA	lncRNA	lncRNA	lncRNA	8	173	2	2.36973	2.9226900000000002	3.47565	8.80001e-4	2.23911e-4	0.0270236	0.0137379
chr22	21837533	21837633	7561085	0	-	0.34	(0.32,0.35]	chr22	773388	293	INTRON	INTRON	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	5	115	2	2.58553	2.922535	3.25954	0.00263388	2.88334e-4	0.045806	0.0150627
chr5	66016624	66016723	2371755	0	+	0.535354	(0.515,0.57]	chr5	228522	15	INTRON	INTRON	ERBIN	ENSG00000112851.15	ENST00000380943.6:ENST00000416865.6:ENST00000380935.5:ENST00000284037.10:ENST00000380938.6:ENST00000511297.5:ENST00000506030.5:ENST00000508515.1	protein_coding	protein_coding	protein_coding	protein_coding	5	72	2	2.34988	2.92242	3.49496	0.00194926	9.61701e-4	0.0410995	0.0282401
chr6	15251262	15251362	2822998	0	+	0.54	(0.515,0.57]	chr6	265190	19	INTRON	INTRON	JARID2	ENSG00000008083.14	ENST00000341776.7:ENST00000397311.4	protein_coding	protein_coding	protein_coding	protein_coding	5	72	2	2.34988	2.92242	3.49496	0.00194926	9.61701e-4	0.0410995	0.0282401
chr4	139978	140078	1905800	0	+	0.48	(0.476,0.515]	chr4	191032	81	INTRON	INTRON	ZNF718	ENSG00000250312.8	ENST00000642529.1:ENST00000510175.6:ENST00000609714.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	145	2	2.15941	2.922365	3.68532	0.00126395	3.392e-5	0.0329641	0.0049119
chr22	20573772	20573868	7480035	0	+	0.583333	(0.57,1]	chr22	763023	2	EXON_MRNA	EXON_MRNA:INTRON	MED15	ENSG00000099917.17	ENST00000433831.5:ENST00000292733.11:ENST00000263205.11:ENST00000406969.5:ENST00000382974.6:ENST00000492381.5:ENST00000478831.5:ENST00000489651.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	34	2	2.28103	2.92236	3.56369	0.0151554	4.26536e-4	0.108535	0.0189958
chr17	8173353	8173453	6719919	0	-	0.37	(0.35,0.378]	chr17	659264	10	UTR3	UTR3:EXON_MRNA	TMEM107	ENSG00000179029.15	ENST00000437139.7:ENST00000449985.6	protein_coding	protein_coding	protein_coding	protein_coding	5	56	2	1.44343	2.922355	4.40128	0.0514088	0.0120289	0.158464	0.0962115
chr1	108959171	108959271	519136	0	-	0.35	(0.32,0.35]	chr1	60932	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	CLCC1	ENSG00000121940.17	ENST00000690509.1:ENST00000687328.1:ENST00000685014.1:ENST00000685540.1:ENST00000686576.1:ENST00000688070.1:ENST00000691513.1:ENST00000686821.1:ENST00000692511.1:ENST00000689479.1:ENST00000687646.1:ENST00000687998.1:ENST00000687226.1:ENST00000693336.1:ENST00000689991.1:ENST00000687591.1:ENST00000691777.1:ENST00000690756.1:ENST00000688778.1:ENST00000685104.1:ENST00000689103.1:ENST00000687734.1:ENST00000686434.1:ENST00000685497.1:ENST00000691342.1:ENST00000686776.1:ENST00000692342.1:ENST00000689351.1:ENST00000692584.1:ENST00000692775.1:ENST00000687134.1:ENST00000675018.1:ENST00000690781.1:ENST00000691556.1:ENST00000689189.1:ENST00000687099.1:ENST00000685791.1:ENST00000687865.1:ENST00000687449.1:ENST00000688285.1:ENST00000369968.7:ENST00000674992.1:ENST00000675001.1:ENST00000369969.7:ENST00000356970.6:ENST00000688610.1:ENST00000675128.1:ENST00000693089.1:ENST00000675571.1:ENST00000675650.1:ENST00000369970.8:ENST00000674561.2:ENST00000675654.1:ENST00000675790.1:ENST00000675584.1:ENST00000692795.1:ENST00000691731.1:ENST00000689359.1:ENST00000676392.2:ENST00000676391.2:ENST00000676454.1:ENST00000674849.1:ENST00000675956.1:ENST00000302500.5:ENST00000675508.1:ENST00000688168.1:ENST00000693673.1:ENST00000692404.1:ENST00000686078.1:ENST00000690874.1:ENST00000692732.1:ENST00000685628.1:ENST00000676306.1:ENST00000676059.2:ENST00000674527.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	244	2	2.50986	2.92228	3.3347	6.44869e-4	4.4539e-6	0.0231923	0.00142022
chr5	32126011	32126111	2597029	0	-	0.39	(0.378,0.408]	chr5	246727	14	UTR3	UTR3:EXON_MRNA	GOLPH3	ENSG00000113384.14	ENST00000265070.7	protein_coding	protein_coding	protein_coding	protein_coding	7	140	2	2.82831	2.92227	3.01623	7.49551e-4	6.09017e-5	0.0251179	0.00644813
chr16	47173845	47173945	6480813	0	-	0.54	(0.515,0.57]	chr16	626957	108	INTRON	INTRON	ITFG1	ENSG00000129636.13	ENST00000568047.5:ENST00000320640.11:ENST00000537184.6:ENST00000542691.5:ENST00000567957.1:ENST00000544001.6:ENST00000565262.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	28	2	1.9459	2.92223	3.89856	0.0429089	0.0280943	0.148082	0.137011
chr6	157986578	157986677	3017058	0	+	0.545455	(0.515,0.57]	chr6	281468	41	INTRON	INTRON	SYNJ2	ENSG00000078269.15	ENST00000355585.9:ENST00000640338.1:ENST00000367113.5	protein_coding	protein_coding	protein_coding	protein_coding	2	28	2	1.9459	2.92223	3.89856	0.0429089	0.0280943	0.148082	0.137011
chr16	89529762	89529854	6420566	0	+	0.48913	(0.476,0.515]	chr16	616241	3	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	SPG7	ENSG00000197912.16	ENST00000647079.1:ENST00000646303.1:ENST00000643649.1:ENST00000643307.1:ENST00000566371.6:ENST00000644498.1:ENST00000645897.1:ENST00000643668.1:ENST00000644225.1:ENST00000645818.2:ENST00000645977.1:ENST00000645063.1:ENST00000646263.1:ENST00000643724.1:ENST00000644781.1:ENST00000644901.1:ENST00000645042.1:ENST00000646531.1:ENST00000646930.1:ENST00000642436.1:ENST00000644210.1:ENST00000564047.2:ENST00000646589.1:ENST00000268704.7:ENST00000646826.1:ENST00000646716.1:ENST00000643345.1:ENST00000341316.6:ENST00000645533.1:ENST00000646958.1:ENST00000642371.1:ENST00000643105.1:ENST00000645354.1:ENST00000642334.1:ENST00000647227.1:ENST00000646445.1:ENST00000564409.2:ENST00000643954.1:ENST00000646399.1:ENST00000644671.1:ENST00000643178.1:ENST00000644748.1:ENST00000643496.1:ENST00000647032.1:ENST00000644751.1:ENST00000642427.1:ENST00000643370.1:ENST00000645886.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	170	2	2.79512	2.922005	3.04889	9.69341e-5	7.70769e-5	0.00827261	0.00784493
chr2	65333252	65333342	1143194	0	-	0.233333	[0,0.28]	chr2	122211	6	INTRON	INTRON	SPRED2	ENSG00000198369.10	ENST00000356388.9:ENST00000443619.6:ENST00000452315.5:ENST00000421087.5:ENST00000474228.1:ENST00000426832.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	88	2	2.90545	2.9219749999999998	2.9385	0.0142776	0.00202423	0.0963703	0.0416117
chr2	47801752	47801849	777229	0	+	0.515464	(0.515,0.57]	chr2	87435	2	INTRON	INTRON	MSH6	ENSG00000116062.18	ENST00000652107.1:ENST00000445503.5:ENST00000614496.4:ENST00000234420.11:ENST00000673637.1:ENST00000540021.6:ENST00000538136.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	53	2	2.39351	2.921825	3.45014	0.0100431	0.00116948	0.0881096	0.0312127
chr1	151399587	151399687	225687	0	+	0.61	(0.57,1]	chr1	25836	1	CDS_START	CDS_START:CDS:EXON_MRNA	PSMB4	ENSG00000159377.11	ENST00000495288.5:ENST00000290541.7:ENST00000495805.5:ENST00000476467.1:ENST00000493673.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	42	387	2	2.73857	2.921765	3.10496	1.02159e-7	6.65487e-9	1.39351e-4	2.08681e-5
chr10	28605297	28605396	4414534	0	+	0.393939	(0.378,0.408]	chr10	407171	89	INTRON	INTRON	WAC	ENSG00000095787.24	ENST00000680735.1:ENST00000375664.8:ENST00000428935.6:ENST00000628285.3:ENST00000681112.1:ENST00000679570.1:ENST00000375646.5:ENST00000354911.9:ENST00000347934.8:ENST00000420266.6:ENST00000679398.1:ENST00000424454.5:ENST00000442148.6:ENST00000414108.6:ENST00000679428.1:ENST00000439676.5:ENST00000345541.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	47	2	2.72993	2.9217649999999997	3.1136	0.0188736	0.00443339	0.108861	0.061054
chr2	151795502	151795602	1243405	0	-	0.39	(0.378,0.408]	chr2	132026	32	INTRON	INTRON	ARL5A	ENSG00000162980.17	ENST00000446896.7	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	2	47	2	2.72993	2.9217649999999997	3.1136	0.0188736	0.00443339	0.108861	0.061054
chr12	92862367	92862466	5386581	0	-	0.393939	(0.378,0.408]	chr12	513660	45	INTRON	INTRON	EEA1	ENSG00000102189.17	ENST00000322349.13:ENST00000418984.7:ENST00000547833.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	48	2	2.46373	2.921715	3.3797	0.0382831	0.00154501	0.141795	0.0362716
chr8	41717802	41717869	3938253	0	-	0.38806	(0.378,0.408]	chr8	361068	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ANK1	ENSG00000029534.21	ENST00000347528.8:ENST00000265709.13:ENST00000289734.13	protein_coding	protein_coding	protein_coding	protein_coding	2	48	2	2.46373	2.921715	3.3797	0.0382831	0.00154501	0.141795	0.0362716
chr9	130596484	130596583	4213262	0	+	0.454545	(0.44,0.476]	chr9	386274	5	INTRON	INTRON	FUBP3	ENSG00000107164.16	ENST00000319725.10:ENST00000650723.1:ENST00000465949.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	124	2	2.56992	2.921705	3.27349	0.00035449500000000003	3.12677e-4	0.0168579	0.0162569
chr5	71502153	71502239	2384050	0	+	0.383721	(0.378,0.408]	chr5	229929	1	SS3_PROX	SS3_PROX:INTRON	BDP1	ENSG00000145734.20	ENST00000358731.9:ENST00000508917.6:ENST00000508157.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	47	2	2.78946	2.9216949999999997	3.05393	0.0158859	0.00551532	0.101453	0.0672816
chr2	70225227	70225327	1152224	0	-	0.25	[0,0.28]	chr2	123073	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	C2orf42:TIA1	ENSG00000115998.8:ENSG00000116001.17	ENST00000470096.1:ENST00000415783.6:ENST00000433529.7:ENST00000282574.8:ENST00000445587.5:ENST00000454815.6:ENST00000477415.5:ENST00000496096.5:ENST00000416149.6:ENST00000474809.6:ENST00000477044.6:ENST00000361692.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	105	2	2.50706	2.921635	3.33621	0.00427056	0.00338815	0.0573912	0.0535583
chr3	128880360	128880457	1498234	0	+	0.463918	(0.44,0.476]	chr3	156397	5	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	ACAD9	ENSG00000177646.20	ENST00000681583.1:ENST00000681367.1:ENST00000679613.1:ENST00000505602.1:ENST00000514643.5:ENST00000680636.1:ENST00000511325.2:ENST00000681319.1:ENST00000681585.1:ENST00000681784.1:ENST00000308982.12:ENST00000512801.5:ENST00000679399.1:ENST00000681552.1:ENST00000511227.5:ENST00000505192.5:ENST00000679990.1:ENST00000514336.1:ENST00000515429.1:ENST00000681886.1:ENST00000679431.1:ENST00000680764.1:ENST00000505867.5:ENST00000680744.1:ENST00000679824.1:ENST00000681589.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	91	2	2.4805	2.921405	3.36231	0.00161678	0.00150019	0.0369204	0.0351802
chr6	26283163	26283261	3071119	0	-	0.387755	(0.378,0.408]	chr6	285471	12	INTRON	INTRON	H4C8	ENSG00000158406.6	ENST00000634956.1:ENST00000634560.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	5	91	2	2.27995	2.9210149999999997	3.56208	0.00388691	6.94246e-4	0.0544347	0.0240761
chr5	154790810	154790910	2527355	0	+	0.46	(0.44,0.476]	chr5	241624	1	SS5_PROX	SS5_PROX:INTRON	LARP1	ENSG00000155506.19	ENST00000687700.1:ENST00000336314.9:ENST00000690816.1:ENST00000518297.6:ENST00000517616.5:ENST00000521577.1:ENST00000519931.5:ENST00000524248.5:ENST00000685946.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	47	2	2.38219	2.92088	3.45957	0.045456	0.00106385	0.149888	0.0300133
chr1	32818679	32818757	66569	0	+	0.410256	(0.408,0.44]	chr1	8527	3	EXON_LNCRNA	EXON_LNCRNA:INTRON	S100PBP	ENSG00000116497.18	ENST00000530710.5:ENST00000373476.5:ENST00000529027.5:ENST00000531123.5:ENST00000356689.7:ENST00000373475.10:ENST00000526230.1:ENST00000531256.1:ENST00000477248.1:ENST00000482212.1:ENST00000474103.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	74	2	2.64127	2.920805	3.20034	0.00398025	0.00125199	0.0549214	0.0328543
chr3	183731739	183731838	1580634	0	+	0.434343	(0.408,0.44]	chr3	163056	25	INTRON	INTRON	YEATS2	ENSG00000163872.16	ENST00000305135.10	protein_coding	protein_coding	protein_coding	protein_coding	4	74	2	2.64127	2.920805	3.20034	0.00398025	0.00125199	0.0549214	0.0328543
chr2	135078664	135078764	872933	0	+	0.62	(0.57,1]	chr2	97740	160	INTRON	INTRON	RAB3GAP1	ENSG00000115839.19	ENST00000539493.3:ENST00000688088.1:ENST00000693554.1:ENST00000690785.1:ENST00000689880.1:ENST00000264158.13:ENST00000690208.1:ENST00000691478.1:ENST00000686114.1:ENST00000685967.1:ENST00000442034.5:ENST00000687199.1:ENST00000691339.1:ENST00000688182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	22	2	1.52865	2.92071	4.31277	0.0730445	0.00346264	0.189414	0.0539802
chr19	10800235	10800332	7014613	0	+	0.505155	(0.476,0.515]	chr19	697005	13	INTRON	INTRON	DNM2	ENSG00000079805.19	ENST00000683738.1:ENST00000682285.1:ENST00000355667.11:ENST00000389253.9:ENST00000585892.5:ENST00000359692.10:ENST00000408974.8:ENST00000587830.2:ENST00000587329.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	61	2	2.21677	2.920705	3.62464	0.0207026	5.079e-4	0.110999	0.0202328
chr19	8471527	8471627	7011041	0	+	0.3	(0.28,0.32]	chr19	696186	1	SS5_PROX	SS5_PROX:INTRON	HNRNPM	ENSG00000099783.12	ENST00000348943.7:ENST00000600092.5:ENST00000325495.9:ENST00000600806.5:ENST00000620401.4:ENST00000594907.5:ENST00000598367.5:ENST00000597270.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	79	2	2.78004	2.92049	3.06094	0.0193244	8.54457e-4	0.108861	0.0265194
chr22	20845809	20845909	7559554	0	-	0.44	(0.408,0.44]	chr22	773216	67	INTRON	INTRON	PI4KA	ENSG00000241973.11	ENST00000255882.11:ENST00000485963.5:ENST00000449120.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	148	2	2.04492	2.920345	3.79577	0.00224174	2.01134e-5	0.0435144	0.00363316
chrX	153911859	153911944	7911534	0	-	0.4	(0.378,0.408]	chrX	805238	3	INTRON	INTRON	ARHGAP4	ENSG00000089820.16	ENST00000393721.5:ENST00000370028.7:ENST00000420383.5:ENST00000350060.10:ENST00000494397.5:ENST00000370016.5:ENST00000470209.5:ENST00000494302.5:ENST00000404127.6:ENST00000442172.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	80	2	2.51043	2.920345	3.33026	0.00304007	0.00189824	0.0493883	0.0402736
chr12	71611585	71611683	5363027	0	-	0.244898	[0,0.28]	chr12	511883	6	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ZFC3H1	ENSG00000133858.17	ENST00000378743.9:ENST00000552994.5:ENST00000551487.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	143	2	2.86095	2.9203200000000002	2.97969	0.00369266	4.25217e-4	0.0535094	0.018441
chr17	81581332	81581432	6849032	0	-	0.33	(0.32,0.35]	chr17	678158	89	INTRON	INTRON	NPLOC4	ENSG00000182446.14	ENST00000331134.11:ENST00000374747.9:ENST00000574897.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	236	2	2.8498	2.9200350000000004	2.99027	1.82813e-4	2.98612e-5	0.0122682	0.00435383
chr18	46092433	46092515	6965440	0	-	0.5	(0.476,0.515]	chr18	689400	2	INTRON	INTRON	ATP5F1A	ENSG00000152234.16	ENST00000398752.11:ENST00000282050.6:ENST00000593152.6:ENST00000586592.5:ENST00000590665.5:ENST00000590156.5:ENST00000592364.5:ENST00000589252.5:ENST00000589869.5:ENST00000590406.5:ENST00000590324.5:ENST00000590448.5:ENST00000592989.1:ENST00000591981.5:ENST00000585650.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	99	2	2.24612	2.9200049999999997	3.59389	0.00799949	3.55544e-5	0.0766625	0.00476902
chr17	40171500	40171596	6609454	0	+	0.364583	(0.35,0.378]	chr17	643723	12	UTR3	UTR3:EXON_MRNA	CASC3	ENSG00000108349.17	ENST00000264645.12:ENST00000394114.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	43	2	1.64283	2.919965	4.1971	0.0367539	0.034896	0.148998	0.138959
chr7	105331963	105332063	3603336	0	-	0.5	(0.476,0.515]	chr7	336161	250	INTRON	INTRON	SRPK2	ENSG00000135250.17	ENST00000393651.8:ENST00000482897.5:ENST00000460391.5:ENST00000462282.5:ENST00000465112.5:ENST00000482862.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	73	2	2.59304	2.9195	3.24596	0.00322919	0.00158794	0.0507087	0.0367961
chr15	65772678	65772778	6209600	0	-	0.35	(0.32,0.35]	chr15	592617	54	INTRON	INTRON	DENND4A	ENSG00000174485.16	ENST00000443035.8:ENST00000431932.6:ENST00000564674.5:ENST00000568515.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	114	2	2.8652	2.9194950000000004	2.97379	0.00164543	4.9686e-4	0.0369207	0.0201536
chr10	74133232	74133330	4653008	0	-	0.55102	(0.515,0.57]	chr10	428478	29	INTRON	INTRON	AP3M1	ENSG00000185009.13	ENST00000355264.9:ENST00000372745.1	protein_coding	protein_coding	protein_coding	protein_coding	2	40	2	2.52504	2.91946	3.31388	0.029342	0.00174704	0.128055	0.0386026
chr19	28537776	28537876	7166473	0	-	0.28	[0,0.28]	chr19	724193	26	INTRON	INTRON	ENSG00000283403	ENSG00000283403.1	ENST00000592347.5	lncRNA	lncRNA	lncRNA	lncRNA	8	200	2	2.07625	2.91945	3.76265	0.00654832	3.53061e-5	0.0701428	0.00474674
chr4	119260953	119261053	2025984	0	+	0.44	(0.408,0.44]	chr4	201489	3	SS5_PROX	SS5_PROX:INTRON	USP53	ENSG00000145390.12	ENST00000692078.1:ENST00000450251.6:ENST00000274030.11:ENST00000688980.1:ENST00000509769.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	93	2	2.17577	2.919435	3.6631	0.00269594	6.21419e-4	0.0479115	0.0229151
chr13	50934404	50934500	5499547	0	+	0.489583	(0.476,0.515]	chr13	526348	6	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	RNASEH2B	ENSG00000136104.21	ENST00000422660.6:ENST00000646731.1:ENST00000645188.1:ENST00000643774.1:ENST00000646279.1:ENST00000646960.1:ENST00000336617.8:ENST00000637648.2:ENST00000645549.1:ENST00000644297.1:ENST00000644034.1:ENST00000645955.1:ENST00000643682.1:ENST00000644518.1:ENST00000642721.1:ENST00000616907.2:ENST00000643462.1:ENST00000644420.1:ENST00000645990.1:ENST00000642995.1:ENST00000646092.1:ENST00000644183.1:ENST00000644425.1:ENST00000643159.1:ENST00000645618.1:ENST00000611510.5:ENST00000642454.1:ENST00000646709.1:ENST00000647387.1:ENST00000645712.1:ENST00000645333.1:ENST00000643215.1:ENST00000495244.7:ENST00000642207.1:ENST00000645370.1:ENST00000459681.3:ENST00000646339.1:ENST00000646964.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	45	2	2.7646	2.91941	3.07422	0.0162075	0.00506023	0.101453	0.0646039
chr16	84728877	84728977	6410192	0	+	0.5	(0.476,0.515]	chr16	615272	120	INTRON	INTRON	USP10	ENSG00000103194.16	ENST00000562743.5:ENST00000540269.6:ENST00000563892.5:ENST00000562092.1:ENST00000569511.5:ENST00000219473.12:ENST00000570191.5:ENST00000563048.5:ENST00000562283.5:ENST00000563386.5:ENST00000569038.5:ENST00000570053.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	45	2	2.7646	2.91941	3.07422	0.0162075	0.00506023	0.101453	0.0646039
chr19	35276200	35276300	7054794	0	+	0.51	(0.476,0.515]	chr19	703934	3	SS5_PROX	SS5_PROX:INTRON	USF2	ENSG00000105698.16	ENST00000222305.8:ENST00000343550.9:ENST00000595068.5:ENST00000379134.7:ENST00000594064.5:ENST00000607959.5:ENST00000596380.5:ENST00000599471.5:ENST00000597671.5:ENST00000599625.1:ENST00000600341.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	45	2	2.7646	2.91941	3.07422	0.0162075	0.00506023	0.101453	0.0646039
chr5	146262892	146262990	2514720	0	+	0.479592	(0.476,0.515]	chr5	240223	7	INTRON	INTRON	ENSG00000275740:RBM27	ENSG00000275740.1:ENSG00000091009.8	ENST00000506502.2:ENST00000265271.7:ENST00000508019.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	45	2	2.7646	2.91941	3.07422	0.0162075	0.00506023	0.101453	0.0646039
chr11	64776045	64776135	4965282	0	-	0.355556	(0.35,0.378]	chr11	467540	1	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	SF1	ENSG00000168066.21	ENST00000334944.9:ENST00000227503.13:ENST00000377394.7:ENST00000448404.5:ENST00000377390.8:ENST00000377387.5:ENST00000681407.1:ENST00000433274.6:ENST00000633899.1:ENST00000413951.5:ENST00000432725.1:ENST00000482693.1:ENST00000463343.1:ENST00000472725.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	170	2	2.07127	2.91937	3.76747	0.00157874	3.1593e-5	0.0366789	0.0046972
chr13	102852208	102852293	5533381	0	+	0.388235	(0.378,0.408]	chr13	528937	2	CDS	CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA	ERCC5	ENSG00000134899.24	ENST00000651002.1:ENST00000535557.5:ENST00000652613.1:ENST00000683246.1:ENST00000682632.1:ENST00000652225.2:ENST00000682869.1:ENST00000684184.1:ENST00000472151.1:ENST00000375958.3:ENST00000651470.1:ENST00000651055.1:ENST00000651281.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	47	2	2.66785	2.91937	3.17089	0.0224639	0.00357279	0.11692	0.0548435
chr7	127912100	127912200	3405018	0	+	0.39	(0.378,0.408]	chr7	318161	69	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000465900.5:ENST00000486037.1:ENST00000484767.5:ENST00000492840.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	47	2	2.66785	2.91937	3.17089	0.0224639	0.00357279	0.11692	0.0548435
chr7	139381841	139381941	3437815	0	+	0.43	(0.408,0.44]	chr7	320340	53	INTRON	INTRON	LUC7L2:FMC1-LUC7L2	ENSG00000146963.18:ENSG00000269955.2	ENST00000541170.7:ENST00000541515.3:ENST00000608368.5:ENST00000619796.4:ENST00000354926.9:ENST00000456182.5:ENST00000263545.7:ENST00000463912.5:ENST00000498518.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	118	2	1.99013	2.91936	3.84859	0.00217704	2.66911e-4	0.0435144	0.0149989
chr22	26569613	26569713	7564863	0	-	0.49	(0.476,0.515]	chr22	774054	40	INTRON	INTRON	TPST2	ENSG00000128294.16	ENST00000338754.9:ENST00000403880.5:ENST00000442495.5:ENST00000440953.5:ENST00000450022.1	protein_coding	protein_coding	protein_coding	protein_coding	2	45	2	2.82673	2.9193499999999997	3.01197	0.0134403	0.00633162	0.0946278	0.0722266
chr7	149249758	149249858	3445751	0	+	0.48	(0.476,0.515]	chr7	321413	2	SS3_PROX	SS3_PROX:INTRON	ZNF212	ENSG00000170260.9	ENST00000335870.7:ENST00000486371.1:ENST00000462724.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	45	2	2.82673	2.9193499999999997	3.01197	0.0134403	0.00633162	0.0946278	0.0722266
chr7	135603494	135603580	3428792	0	+	0.395349	(0.378,0.408]	chr7	319721	1	INTRON	INTRON	NUP205	ENSG00000155561.15	ENST00000285968.11:ENST00000607647.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	121	2	1.92997	2.9193	3.90863	0.00301953	2.19981e-4	0.0507747	0.0135522
chr1	31305566	31305665	61245	0	+	0.474747	(0.44,0.476]	chr1	7820	80	INTRON	INTRON	ZCCHC17	ENSG00000121766.16	ENST00000618216.4:ENST00000546109.5:ENST00000616393.4:ENST00000616859.4:ENST00000615916.4:ENST00000479629.5:ENST00000373714.5:ENST00000344147.10:ENST00000627541.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	61	2	2.44514	2.91918	3.39322	0.0087381	0.00187283	0.0845538	0.0390476
chr16	74580896	74580996	6525070	0	-	0.4	(0.378,0.408]	chr16	631842	177	INTRON	INTRON	GLG1	ENSG00000090863.12	ENST00000205061.9:ENST00000422840.7:ENST00000447066.6:ENST00000562090.5:ENST00000567951.5:ENST00000627032.2:ENST00000565260.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	47	2	2.84663	2.919165	2.9917	0.0133954	0.0068789	0.0946278	0.0749442
chr5	157804887	157804983	2758104	0	-	0.322917	(0.32,0.35]	chr5	260267	8	INTRON	INTRON	CLINT1	ENSG00000113282.14	ENST00000523094.5:ENST00000411809.7:ENST00000530742.5:ENST00000523908.5:ENST00000530302.1:ENST00000521615.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	146	2	2.32039	2.919105	3.51782	0.00157464	1.4271e-4	0.036631	0.0109245
chr4	17809024	17809124	2116450	0	-	0.27	[0,0.28]	chr4	209071	34	INTRON	INTRON	DCAF16	ENSG00000163257.11	ENST00000382247.6:ENST00000507768.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	107	2	2.22889	2.919085	3.60928	0.0128832	9.66382e-4	0.0926667	0.0285961
chr7	135966528	135966628	3649364	0	-	0.42	(0.408,0.44]	chr7	339214	145	INTRON	INTRON	MTPN	ENSG00000105887.11	ENST00000393085.4:ENST00000435723.1	protein_coding	protein_coding	protein_coding	protein_coding	5	105	2	1.96534	2.918975	3.87261	0.0216499	6.0564e-6	0.11491	0.00172409
chr1	154973508	154973608	559841	0	-	0.34	(0.32,0.35]	chr1	66662	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	SHC1	ENSG00000160691.19	ENST00000368450.5:ENST00000368453.8:ENST00000412170.5:ENST00000366442.2	protein_coding	protein_coding	protein_coding	protein_coding	2	53	2	2.51061	2.918955	3.3273	0.0364463	0.00218894	0.138959	0.0435144
chr16	85559060	85559160	6415422	0	+	0.62	(0.57,1]	chr16	615470	23	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	8	80	2	2.8182	2.918955	3.01971	1.17872e-4	3.02803e-5	0.00930884	0.00456454
chr7	55955933	55956027	3318559	0	+	0.521277	(0.515,0.57]	chr7	308398	9	UTR3	UTR3:EXON_MRNA:INTRON	NIPSNAP2:MRPS17	ENSG00000146729.10:ENSG00000239789.6	ENST00000446692.5:ENST00000285298.9	protein_coding	protein_coding	protein_coding	protein_coding	2	40	2	2.74772	2.91887	3.09002	0.0142192	0.00491099	0.103638	0.0609494
chr21	42846552	42846651	7467571	0	-	0.585859	(0.57,1]	chr21	760925	29	INTRON	INTRON	WDR4	ENSG00000160193.12	ENST00000330317.6	protein_coding	protein_coding	protein_coding	protein_coding	4	41	2	2.60916	2.91886	3.22856	0.00205928	0.00119055	0.0420839	0.0315806
chr1	229327558	229327658	652459	0	-	0.62	(0.57,1]	chr1	77246	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	CCSAP	ENSG00000154429.11	ENST00000366687.5:ENST00000284617.7:ENST00000366686.1:ENST00000483092.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	33	2	2.6547	2.91885	3.183	0.00346848	0.00254356	0.0539802	0.0448135
chr6	57211244	57211343	3114801	0	-	0.414141	(0.408,0.44]	chr6	291786	4	INTRON	INTRON	RAB23	ENSG00000112210.12	ENST00000468148.6:ENST00000317483.4	protein_coding	protein_coding	protein_coding	protein_coding	4	73	2	2.46587	2.918745	3.37162	0.00280622	0.00208674	0.0488779	0.0411801
chr18	12706921	12707021	6875948	0	+	0.41	(0.408,0.44]	chr18	681229	2	SS5_PROX	SS5_PROX:INTRON	PSMG2	ENSG00000128789.21	ENST00000585331.6:ENST00000586445.5:ENST00000590217.5:ENST00000586587.1:ENST00000317615.11	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	76	2	2.42404	2.918635	3.41323	0.00413548	0.00129989	0.0566868	0.0333764
chr6	161051175	161051275	3025089	0	+	0.34	(0.32,0.35]	chr6	282325	8	INTRON	INTRON	MAP3K4	ENSG00000085511.20	ENST00000366919.6:ENST00000392142.9:ENST00000542952.5:ENST00000366920.6:ENST00000348824.11:ENST00000544041.5:ENST00000490904.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	119	2	1.69015	2.918515	4.14688	0.0159619	9.76776e-5	0.109464	0.00889684
chr12	43727079	43727179	5313860	0	-	0.35	(0.32,0.35]	chr12	505399	82	UTR3	UTR3:EXON_MRNA	PUS7L	ENSG00000129317.15	ENST00000344862.10	protein_coding	protein_coding	protein_coding	protein_coding	2	53	2	2.84569	2.91847	2.99125	0.0121137	0.00958447	0.0962599	0.0820838
chr20	34588252	34588352	7330248	0	-	0.31	(0.28,0.32]	chr20	746628	4	SS5_PROX	SS5_PROX:INTRON	PIGU	ENSG00000101464.11	ENST00000217446.8:ENST00000374820.6:ENST00000438215.1:ENST00000480175.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	57	2	2.91832	2.918415	2.91851	0.0130672	0.0102484	0.093385	0.089002
chr5	127526317	127526417	2479883	0	+	0.41	(0.408,0.44]	chr5	236787	3	SS3_PROX	SS3_PROX:INTRON	PRRC1	ENSG00000164244.21	ENST00000296666.13:ENST00000442138.6:ENST00000512635.2	protein_coding	protein_coding	protein_coding	protein_coding	3	63	2	2.78122	2.918275	3.05533	0.015812	6.50769e-4	0.101453	0.0231135
chr6	37828911	37829011	2857124	0	+	0.43	(0.408,0.44]	chr6	270225	85	INTRON	INTRON	ZFAND3	ENSG00000156639.12	ENST00000287218.9:ENST00000373391.6:ENST00000474522.5	protein_coding	protein_coding	protein_coding	protein_coding	3	63	2	2.78122	2.918275	3.05533	0.015812	6.50769e-4	0.101453	0.0231135
chr17	81562554	81562653	6848830	0	-	0.393939	(0.378,0.408]	chr17	678117	9	UTR3	UTR3:EXON_MRNA:INTRON	NPLOC4	ENSG00000182446.14	ENST00000331134.11:ENST00000572760.5:ENST00000572346.5:ENST00000573519.5:ENST00000573876.1:ENST00000571714.5:ENST00000572824.1:ENST00000573212.5:ENST00000576713.6:ENST00000374747.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	87	2	2.43777	2.9182449999999998	3.39872	0.0019852	0.00144299	0.0404516	0.034834
chr6	49608106	49608203	3105164	0	-	0.185567	[0,0.28]	chr6	290636	5	INTRON	INTRON	RHAG	ENSG00000112077.18	ENST00000371175.10:ENST00000646272.1:ENST00000646939.1:ENST00000646963.1	protein_coding	protein_coding	protein_coding	protein_coding	6	134	2	2.21182	2.9179649999999997	3.62411	0.0034604	0.00157815	0.0539802	0.0362091
chr6	147763445	147763545	2991633	0	+	0.38	(0.378,0.408]	chr6	280177	260	INTRON	INTRON	ENSG00000227681	ENSG00000227681.5	ENST00000427015.1	lncRNA	lncRNA	lncRNA	lncRNA	3	64	2	2.11194	2.917955	3.72397	0.0292534	3.23378e-4	0.128055	0.0159645
chr17	41781169	41781269	6769282	0	-	0.48	(0.476,0.515]	chr17	666305	79	INTRON	INTRON	JUP	ENSG00000173801.17	ENST00000310706.9:ENST00000393930.5:ENST00000393931.8:ENST00000449889.5:ENST00000437187.5:ENST00000424457.5:ENST00000591690.5:ENST00000437369.5:ENST00000589036.1:ENST00000465293.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	46	2	2.48527	2.91793	3.35059	0.03496	0.00171515	0.13747500000000001	0.0381936
chr19	19423015	19423115	7035519	0	+	0.47	(0.44,0.476]	chr19	701433	166	INTRON	INTRON	GATAD2A	ENSG00000167491.18	ENST00000494516.6:ENST00000360315.7:ENST00000609040.5:ENST00000417582.6:ENST00000683918.1:ENST00000448576.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	61	2	2.47339	2.91785	3.36231	0.0090196	0.00161678	0.080367	0.0369204
chr19	48134653	48134741	7197432	0	-	0.397727	(0.378,0.408]	chr19	729463	2	INTRON	INTRON	LIG1	ENSG00000105486.14	ENST00000263274.12:ENST00000536218.5:ENST00000427526.6:ENST00000594759.5:ENST00000594067.5:ENST00000601091.5:ENST00000613670.4:ENST00000596672.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	63	2	2.51464	2.9173999999999998	3.32016	0.00684341	0.00268328	0.0748032	0.0464781
chr6	7299620	7299719	3053254	0	-	0.484848	(0.476,0.515]	chr6	283964	4	INTRON	INTRON	SSR1	ENSG00000124783.14	ENST00000474597.5:ENST00000650389.1:ENST00000244763.9:ENST00000397511.6:ENST00000489567.5:ENST00000479365.5:ENST00000479485.5:ENST00000462112.1	protein_coding	protein_coding	protein_coding	protein_coding	7	139	2	2.53419	2.917265	3.30034	0.00251905	9.52798e-6	0.0446195	0.0022376
chr8	125013315	125013414	3853377	0	+	0.363636	(0.35,0.378]	chr8	355167	13	INTRON	INTRON	SQLE	ENSG00000104549.12	ENST00000523430.5:ENST00000265896.10:ENST00000518931.1:ENST00000520493.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	41	2	1.4414	2.917215	4.39303	0.0629423	0.0237246	0.196658	0.118716
chr7	128584179	128584278	3407890	0	+	0.424242	(0.408,0.44]	chr7	318358	37	INTRON	INTRON	ENSG00000280828:ENSG00000242588	ENSG00000280828.1:ENSG00000242588.6	ENST00000479267.2:ENST00000605862.5	lncRNA	lncRNA	lncRNA:unprocessed_pseudogene	lncRNA:unprocessed_pseudogene	4	40	2	1.60344	2.9172	4.23096	0.0387506	0.0278028	0.160156	0.123904
chr2	144509996	144510095	1241709	0	-	0.343434	(0.32,0.35]	chr2	131749	27	INTRON	INTRON	ZEB2	ENSG00000169554.23	ENST00000636471.1:ENST00000627532.3:ENST00000638128.1:ENST00000637304.1:ENST00000419938.5:ENST00000409487.7:ENST00000636732.2:ENST00000636026.2:ENST00000675069.1:ENST00000689298.1:ENST00000539609.7:ENST00000558170.6:ENST00000303660.8:ENST00000427902.5:ENST00000637267.2:ENST00000392861.6:ENST00000431672.4:ENST00000409211.5:ENST00000465308.5:ENST00000434448.5:ENST00000472146.5:ENST00000461784.3:ENST00000476394.5:ENST00000637591.2:ENST00000479735.1:ENST00000453352.5:ENST00000435831.5:ENST00000444559.5:ENST00000630572.2:ENST00000484313.3:ENST00000629955.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	243	2	2.8839	2.9170949999999998	2.95029	1.13561e-4	4.06734e-5	0.00958197	0.00518378
chrX	13313840	13313914	7622188	0	+	0.405405	(0.378,0.408]	chrX	780271	1	INTRON	INTRON	GS1-600G8.3	ENSG00000231216.1	ENST00000431486.1	lncRNA	lncRNA	lncRNA	lncRNA	7	133	2	2.47001	2.91706	3.36411	9.53492e-4	1.36472e-4	0.0282335	0.010058
chr1	27553717	27553804	406970	0	-	0.494253	(0.476,0.515]	chr1	49011	3	SS3_PROX	SS3_PROX:INTRON	AHDC1	ENSG00000126705.15	ENST00000247087.10:ENST00000673934.1:ENST00000644989.1:ENST00000374011.6:ENST00000642416.1:ENST00000642245.1:ENST00000643308.1:ENST00000487743.3:ENST00000490295.2:ENST00000645669.1:ENST00000644550.1:ENST00000480033.3:ENST00000644119.1:ENST00000643219.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	45	2	2.69967	2.91678	3.13389	0.0195838	0.00405473	0.109483	0.0578376
chr15	58832316	58832416	6037355	0	+	0.51	(0.476,0.515]	chr15	574943	4	SS5_PROX	SS5_PROX:INTRON	MINDY2	ENSG00000128923.11	ENST00000316848.9:ENST00000560289.5:ENST00000559228.6:ENST00000450403.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	45	2	2.69967	2.91678	3.13389	0.0195838	0.00405473	0.109483	0.0578376
chr21	44134354	44134454	7416281	0	+	0.49	(0.476,0.515]	chr21	756016	2	SS5_PROX	SS5_PROX:INTRON	GATD3	ENSG00000160221.18	ENST00000644251.1:ENST00000645487.1:ENST00000495007.5:ENST00000427803.6:ENST00000493883.5:ENST00000480786.1:ENST00000348499.9:ENST00000291577.11:ENST00000389690.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	45	2	2.69967	2.91678	3.13389	0.0195838	0.00405473	0.109483	0.0578376
chr1	113947749	113947849	191981	0	+	0.36	(0.35,0.378]	chr1	21149	59	INTRON	INTRON	HIPK1	ENSG00000163349.22	ENST00000426820.7:ENST00000626993.2:ENST00000369559.8:ENST00000369558.5:ENST00000369561.8:ENST00000369555.6	protein_coding	protein_coding	protein_coding	protein_coding	2	49	2	2.78212	2.91674	3.05136	0.0168532	0.00578894	0.103549	0.0684334
chr22	20637510	20637610	7557908	0	-	0.37	(0.35,0.378]	chr22	772926	93	INTRON	INTRON	SMPD4P1	ENSG00000223553.6	ENST00000443839.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	2	49	2	2.78212	2.91674	3.05136	0.0168532	0.00578894	0.103549	0.0684334
chr2	182998796	182998895	1285628	0	-	0.424242	(0.408,0.44]	chr2	135406	26	INTRON	INTRON	NCKAP1	ENSG00000061676.15	ENST00000361354.9:ENST00000360982.2	protein_coding	protein_coding	protein_coding	protein_coding	4	74	2	1.96534	2.91671	3.86808	0.0216499	1.49394e-4	0.11491	0.0106137
chr2	241686227	241686302	1349436	0	-	0.426667	(0.408,0.44]	chr2	141821	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DTYMK	ENSG00000168393.13	ENST00000400770.6:ENST00000305784.7:ENST00000445261.5:ENST00000432348.5:ENST00000493095.1:ENST00000464603.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	73	2	2.5027	2.916685	3.33067	0.0024459	0.00238178	0.0449397	0.0445752
chr15	48342177	48342277	6018922	0	+	0.25	[0,0.28]	chr15	573644	2	UTR3	UTR3:EXON_MRNA	DUT	ENSG00000128951.14	ENST00000558813.5:ENST00000331200.8:ENST00000558978.5:ENST00000455976.6:ENST00000559540.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	170	2	1.47993	2.9166749999999997	4.35342	0.026411	8.16716e-5	0.133676	0.00810831
chr11	66366564	66366664	4968290	0	-	0.59	(0.57,1]	chr11	468510	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	SLC29A2	ENSG00000174669.12	ENST00000311161.11:ENST00000357440.7:ENST00000544554.5:ENST00000540386.5:ENST00000619145.4:ENST00000546034.1:ENST00000541567.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	117	2	2.43516	2.91667	3.39818	1.58496e-4	4.60347e-7	0.0108324	3.89551e-4
chr1	165837517	165837617	243848	0	+	0.43	(0.408,0.44]	chr1	29139	92	INTRON	INTRON	UCK2	ENSG00000143179.16	ENST00000367879.9:ENST00000642653.1	protein_coding	protein_coding	protein_coding	protein_coding	3	63	2	2.68622	2.91664	3.14706	0.00418848	0.00382411	0.0572071	0.0562562
chr16	644730	644828	6273198	0	+	0.642857	(0.57,1]	chr16	598786	12	INTRON	INTRON	MCRIP2	ENSG00000172366.20	ENST00000611328.4:ENST00000307650.9:ENST00000491999.5:ENST00000629534.2:ENST00000474840.5:ENST00000615744.4:ENST00000620462.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	34	2	2.80351	2.9165900000000002	3.02967	0.00471306	0.00172505	0.0631419	0.0374701
chr7	157210715	157210814	3454673	0	+	0.424242	(0.408,0.44]	chr7	322975	24	INTRON	INTRON	UBE3C	ENSG00000009335.18	ENST00000348165.10:ENST00000469336.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	73	2	2.30838	2.916545	3.52471	0.00547703	0.00112428	0.0671198	0.0306963
chr15	64534249	64534349	6044826	0	+	0.46	(0.44,0.476]	chr15	575696	313	INTRON	INTRON	ZNF609	ENSG00000180357.10	ENST00000326648.5:ENST00000558680.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	37	2	1.49942	2.9164399999999997	4.33346	0.0792118	0.0120349	0.199574	0.0962115
chrX	77778354	77778454	7847392	0	-	0.49	(0.476,0.515]	chrX	800211	608	INTRON	INTRON	ATRX	ENSG00000085224.23	ENST00000373344.11:ENST00000395603.7:ENST00000480283.5:ENST00000624166.3:ENST00000624032.3:ENST00000623321.3:ENST00000624668.3:ENST00000622960.1:ENST00000624193.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	100	2	1.85394	2.916395	3.97885	0.00763096	1.30749e-4	0.0777238	0.0103941
chr17	1377438	1377538	6699381	0	-	0.51	(0.476,0.515]	chr17	655552	73	INTRON	INTRON	YWHAE	ENSG00000108953.17	ENST00000264335.13:ENST00000571732.5:ENST00000573026.1:ENST00000573196.5:ENST00000575977.1:ENST00000469398.5:ENST00000486241.1:ENST00000489287.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	62	2	2.69886	2.916375	3.13389	0.00405473	0.00385209	0.0578376	0.0542786
chr10	68766775	68766873	4442744	0	+	0.469388	(0.44,0.476]	chr10	409690	3	INTRON	INTRON	CCAR1	ENSG00000060339.14	ENST00000630771.2:ENST00000543719.5:ENST00000541012.5:ENST00000265872.11:ENST00000539539.5:ENST00000543229.5:ENST00000536012.5:ENST00000543225.5:ENST00000540210.5:ENST00000543706.1:ENST00000539250.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	81	2	2.7096	2.91629	3.12298	0.00376205	4.66209e-4	0.0539118	0.0195589
chr3	196063324	196063424	1897353	0	-	0.2	[0,0.28]	chr3	189927	2	EXON_LNCRNA	EXON_LNCRNA:SS3_PROX:INTRON	TFRC	ENSG00000072274.13	ENST00000420415.5:ENST00000360110.9:ENST00000392396.7:ENST00000465288.5:ENST00000464368.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	28	751	2	2.77551	2.916275	3.05704	1.56307e-4	1.55226e-6	0.011366	7.4731e-4
chr21	10423491	10423591	7368229	0	+	0.31	(0.28,0.32]	chr21	751975	82	INTRON	INTRON	BAGE2	ENSG00000187172.15	ENST00000474011.5:ENST00000470054.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	5	105	2	2.31129	2.9162749999999997	3.52126	0.00319044	0.00175369	0.0520345	0.0376491
chr1	7844014	7844111	16259	0	+	0.237113	[0,0.28]	chr1	1444	14	UTR3	UTR3:EXON_MRNA	PER3	ENSG00000049246.15	ENST00000377532.8:ENST00000613533.4:ENST00000614998.4:ENST00000361923.2	protein_coding	protein_coding	protein_coding	protein_coding	3	88	2	2.41169	2.916145	3.4206	0.0122872	0.00322364	0.0970106	0.0507087
chr17	61840133	61840233	6808700	0	-	0.52	(0.515,0.57]	chr17	672605	310	INTRON	INTRON	BRIP1	ENSG00000136492.10	ENST00000259008.7:ENST00000682755.1:ENST00000682453.1:ENST00000683039.1:ENST00000682989.1:ENST00000682589.1:ENST00000683235.1:ENST00000682477.1:ENST00000684584.1:ENST00000577598.5:ENST00000682066.1:ENST00000584322.2:ENST00000683381.1:ENST00000579028.2:ENST00000682611.1:ENST00000683692.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	27	2	1.79136	2.91611	4.04086	0.0638444	0.0197045	0.177811	0.120063
chr4	88978726	88978826	2202180	0	-	0.54	(0.515,0.57]	chr4	215991	401	INTRON	INTRON	FAM13A	ENSG00000138640.15	ENST00000264344.10:ENST00000511976.5:ENST00000502459.5:ENST00000512339.5:ENST00000509094.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	27	2	1.79136	2.91611	4.04086	0.0638444	0.0197045	0.177811	0.120063
chr3	98588954	98589054	1755115	0	-	0.4	(0.378,0.408]	chr3	178002	1	SS3_PROX	SS3_PROX:INTRON	CPOX	ENSG00000080819.9	ENST00000647941.2	protein_coding	protein_coding	protein_coding	protein_coding	8	143	2	2.66266	2.9161099999999998	3.16956	5.70211e-4	1.18377e-4	0.0220524	0.00930884
chr1	31265475	31265575	412971	0	-	0.33	(0.32,0.35]	chr1	49773	19	INTRON	INTRON	SNRNP40	ENSG00000060688.13	ENST00000263694.9:ENST00000489853.1:ENST00000373720.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	109	2	1.64095	2.916065	4.19118	0.0295558	3.63425e-5	0.128413	0.00482856
chr17	39921228	39921322	6767468	0	-	0.585106	(0.57,1]	chr17	665677	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ORMDL3	ENSG00000172057.10	ENST00000579695.5:ENST00000304046.7:ENST00000579287.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	40	2	2.64903	2.916015	3.183	0.00254356	9.85026e-4	0.0448135	0.0288488
chr6	34694745	34694845	3086200	0	-	0.52	(0.515,0.57]	chr6	288696	229	INTRON	INTRON	ILRUN	ENSG00000196821.10	ENST00000374026.7:ENST00000374023.8	protein_coding	protein_coding	protein_coding	protein_coding	4	36	2	1.62814	2.915975	4.20381	0.035203	0.0189208	0.150193	0.108861
chr1	40196462	40196561	80318	0	+	0.343434	(0.32,0.35]	chr1	10425	3	INTRON	INTRON	RLF	ENSG00000117000.9	ENST00000372771.5	protein_coding	protein_coding	protein_coding	protein_coding	3	72	2	2.59855	2.91593	3.23331	0.00682041	0.00315414	0.0712518	0.0515261
chr6	16133228	16133327	2825814	0	+	0.272727	[0,0.28]	chr6	265309	21	INTRON	INTRON	MYLIP	ENSG00000007944.15	ENST00000356840.8:ENST00000349606.4	protein_coding	protein_coding	protein_coding	protein_coding	3	87	2	2.52489	2.91592	3.30695	0.0084136	0.00469836	0.082518	0.0600108
chr2	108548260	108548360	845984	0	+	0.33	(0.32,0.35]	chr2	94661	133	INTRON	INTRON	LIMS1	ENSG00000169756.17	ENST00000695516.1:ENST00000544547.6:ENST00000695517.1	protein_coding	protein_coding	protein_coding	protein_coding	3	73	2	2.25173	2.9157599999999997	3.57979	0.0180122	0.00118589	0.114436	0.0315652
chr17	57107845	57107945	6632578	0	+	0.49	(0.476,0.515]	chr17	647901	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	AKAP1	ENSG00000121057.13	ENST00000337714.8:ENST00000571629.5:ENST00000621116.4:ENST00000572557.5:ENST00000481416.5:ENST00000539273.5:ENST00000314126.4:ENST00000576295.5:ENST00000573326.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	62	2	2.26034	2.91537	3.5704	0.0166235	8.75056e-4	0.110511	0.0270926
chr17	57312325	57312425	6633312	0	+	0.49	(0.476,0.515]	chr17	648024	16	INTRON	INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000581776.5:ENST00000674961.1:ENST00000582453.5:ENST00000675656.1:ENST00000322684.7:ENST00000579590.5:ENST00000676073.1:ENST00000675822.1:ENST00000442934.6:ENST00000579180.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	62	2	2.26034	2.91537	3.5704	0.0166235	8.75056e-4	0.110511	0.0270926
chr22	49519080	49519180	7601270	0	-	0.53	(0.515,0.57]	chr22	778566	775	INTRON	INTRON	MIR3667HG	ENSG00000188511.13	ENST00000414287.5:ENST00000416411.1	lncRNA	lncRNA	lncRNA	lncRNA	3	52	2	2.62817	2.915285	3.2024	0.004048	0.00322022	0.0578376	0.0507087
chr12	74274333	74274432	5368193	0	-	0.414141	(0.408,0.44]	chr12	512132	45	INTRON	INTRON	LINC02882:ENSG00000257183	ENSG00000251138.7:ENSG00000257183.1	ENST00000663261.1:ENST00000665907.1:ENST00000669556.1:ENST00000653134.1:ENST00000549905.5:ENST00000662107.1:ENST00000658833.1:ENST00000515416.7:ENST00000551726.2:ENST00000670573.1:ENST00000656876.1:ENST00000668228.1:ENST00000668997.1:ENST00000665895.1:ENST00000670471.1:ENST00000658677.1:ENST00000668665.1:ENST00000552046.1	lncRNA	lncRNA	lncRNA	lncRNA	3	61	2	2.49983	2.9152500000000003	3.33067	0.00713527	0.0024459	0.0756118	0.0445752
chr12	93488072	93488160	5189462	0	+	0.5	(0.476,0.515]	chr12	490853	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MRPL42	ENSG00000198015.14	ENST00000549982.6:ENST00000552217.6:ENST00000393128.8:ENST00000552326.5:ENST00000358678.7:ENST00000547098.5:ENST00000551396.5:ENST00000549561.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	72	2	2.3346	2.915235	3.49587	0.00494807	0.00120011	0.0646039	0.0315806
chr19	1427444	1427544	6995301	0	+	0.63	(0.57,1]	chr19	693206	12	EXON_MRNA	EXON_MRNA:INTRON	DAZAP1	ENSG00000071626.17	ENST00000336761.10:ENST00000233078.9:ENST00000592522.5:ENST00000586579.5:ENST00000587079.5:ENST00000592453.2:ENST00000589484.5:ENST00000585485.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	9	84	2	2.47467	2.9151800000000003	3.35569	2.17796e-4	1.14916e-5	0.0129418	0.00268333
chr12	123756521	123756618	5244550	0	+	0.556701	(0.515,0.57]	chr12	498651	3	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	ATP6V0A2	ENSG00000185344.15	ENST00000330342.8:ENST00000675344.1:ENST00000534943.5:ENST00000544833.1:ENST00000543687.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	63	2	2.20213	2.91517	3.62821	0.00853365	4.12866e-4	0.0780043	0.0181365
chr15	80137914	80138010	6071834	0	+	0.322917	(0.32,0.35]	chr15	578378	4	UTR3	UTR3:EXON_MRNA	ZFAND6	ENSG00000086666.19	ENST00000613266.4:ENST00000559157.5:ENST00000261749.11:ENST00000558494.5:ENST00000618205.4:ENST00000559835.5:ENST00000559775.5:ENST00000616533.4:ENST00000557983.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	50	2	1.46273	2.91514	4.36755	0.0451962	0.0300552	0.163755	0.129138
chr1	171497697	171497797	253336	0	+	0.49	(0.476,0.515]	chr1	30096	116	INTRON	INTRON	PRRC2C	ENSG00000117523.18	ENST00000647382.2:ENST00000367742.7:ENST00000476522.5:ENST00000338920.8:ENST00000467601.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	100	2	1.99499	2.91505	3.83511	0.00408599	2.63754e-4	0.0581771	0.0149561
chr17	62531592	62531691	6653414	0	+	0.343434	(0.32,0.35]	chr17	649344	69	INTRON	INTRON	TLK2	ENSG00000146872.19	ENST00000582809.5:ENST00000684213.1:ENST00000583843.5:ENST00000582195.6:ENST00000682085.1:ENST00000580705.5:ENST00000346027.10:ENST00000326270.13:ENST00000682203.1:ENST00000343388.11:ENST00000683536.1:ENST00000684440.1:ENST00000684772.1:ENST00000682274.1:ENST00000682827.1:ENST00000682075.1:ENST00000683104.1:ENST00000684012.1:ENST00000581041.5:ENST00000684553.1:ENST00000683737.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	31	2	1.88468	2.9149849999999997	3.94529	0.0693433	0.0515071	0.184298	0.176696
chr18	36907004	36907104	6893616	0	+	0.34	(0.32,0.35]	chr18	683221	207	INTRON	INTRON	KIAA1328	ENSG00000150477.15	ENST00000592611.5:ENST00000280020.10:ENST00000590617.5:ENST00000587139.5:ENST00000591619.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	31	2	1.88468	2.9149849999999997	3.94529	0.0693433	0.0515071	0.184298	0.176696
chr2	227533958	227534058	1026287	0	+	0.34	(0.32,0.35]	chr2	109606	2	SS5_PROX	SS5_PROX:INTRON	AGFG1	ENSG00000173744.18	ENST00000409979.6:ENST00000310078.13:ENST00000409315.5:ENST00000373671.7:ENST00000409171.5	protein_coding	protein_coding	protein_coding	protein_coding	2	31	2	1.88468	2.9149849999999997	3.94529	0.0693433	0.0515071	0.184298	0.176696
chr9	37125417	37125515	4117704	0	+	0.428571	(0.408,0.44]	chr9	375364	34	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000322831.6:ENST00000461038.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	84	2	2.41796	2.9147	3.41144	0.00178336	0.0015483	0.0379201	0.0363194
chr1	108959271	108959371	519137	0	-	0.47	(0.44,0.476]	chr1	60933	1	SS3_PROX	SS3_PROX:INTRON	CLCC1	ENSG00000121940.17	ENST00000690509.1:ENST00000687328.1:ENST00000685014.1:ENST00000685540.1:ENST00000686576.1:ENST00000688070.1:ENST00000691513.1:ENST00000686821.1:ENST00000692511.1:ENST00000689479.1:ENST00000687646.1:ENST00000687998.1:ENST00000687226.1:ENST00000693336.1:ENST00000689991.1:ENST00000687591.1:ENST00000691777.1:ENST00000690756.1:ENST00000688778.1:ENST00000685104.1:ENST00000689103.1:ENST00000687734.1:ENST00000686434.1:ENST00000685497.1:ENST00000691342.1:ENST00000686776.1:ENST00000692342.1:ENST00000689351.1:ENST00000692584.1:ENST00000692775.1:ENST00000687134.1:ENST00000675018.1:ENST00000690781.1:ENST00000691556.1:ENST00000689189.1:ENST00000687099.1:ENST00000685791.1:ENST00000687865.1:ENST00000687449.1:ENST00000688285.1:ENST00000369968.7:ENST00000674992.1:ENST00000675001.1:ENST00000369969.7:ENST00000356970.6:ENST00000688610.1:ENST00000675128.1:ENST00000693089.1:ENST00000675571.1:ENST00000675650.1:ENST00000369970.8:ENST00000674561.2:ENST00000675654.1:ENST00000675790.1:ENST00000675584.1:ENST00000692795.1:ENST00000691731.1:ENST00000689359.1:ENST00000676392.2:ENST00000676391.2:ENST00000676454.1:ENST00000674849.1:ENST00000675956.1:ENST00000302500.5:ENST00000675508.1:ENST00000688168.1:ENST00000693673.1:ENST00000692404.1:ENST00000686078.1:ENST00000690874.1:ENST00000692732.1:ENST00000685628.1:ENST00000676306.1:ENST00000676059.2:ENST00000674527.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	149	2	2.89756	2.91457	2.93158	4.10713e-4	5.04731e-5	0.0186113	0.0058291
chr3	72418109	72418209	1745636	0	-	0.38	(0.378,0.408]	chr3	177368	376	INTRON	INTRON	RYBP	ENSG00000163602.12	ENST00000477973.5	protein_coding	protein_coding	protein_coding	protein_coding	5	105	2	2.5938	2.91457	3.23534	0.00614976	5.26448e-5	0.0676501	0.00591845
chr14	96338751	96338849	5966114	0	-	0.346939	(0.32,0.35]	chr14	566834	39	INTRON	INTRON	ATG2B	ENSG00000066739.12	ENST00000359933.6	protein_coding	protein_coding	protein_coding	protein_coding	3	70	2	2.7493	2.914325	3.07935	0.00724137	0.00296357	0.0729826	0.0500135
chr3	47659996	47660095	1683830	0	-	0.373737	(0.35,0.378]	chr3	171996	209	INTRON	INTRON	SMARCC1	ENSG00000173473.11	ENST00000254480.10:ENST00000425518.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	67	2	2.56071	2.914325	3.26794	0.00725312	0.00257067	0.072984	0.0466761
chr15	66660464	66660564	6051566	0	+	0.52	(0.515,0.57]	chr15	576221	779	INTRON	INTRON	LINC01169	ENSG00000259471.1	ENST00000558797.1	lncRNA	lncRNA	lncRNA	lncRNA	3	52	2	2.68132	2.91431	3.1473	0.00397184	0.00324198	0.0549214	0.0524329
chr5	138190689	138190784	2731479	0	-	0.526316	(0.515,0.57]	chr5	257211	4	INTRON	INTRON	CDC23	ENSG00000094880.11	ENST00000394886.7:ENST00000471692.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	52	2	2.57298	2.914225	3.25547	0.00506495	0.00261721	0.0646039	0.0455413
chr1	201851111	201851209	291978	0	+	0.459184	(0.44,0.476]	chr1	33544	4	INTRON	INTRON	IPO9	ENSG00000198700.10	ENST00000464348.5:ENST00000361565.9	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	86	2	2.23425	2.9142099999999997	3.59417	0.00441123	5.78231e-4	0.0587529	0.0218253
chr16	70567636	70567709	6385609	0	+	0.383562	(0.378,0.408]	chr16	613989	1	SS5_PROX	SS5_PROX:INTRON	SF3B3	ENSG00000189091.13	ENST00000302516.10	protein_coding	protein_coding	protein_coding	protein_coding	2	47	2	2.90162	2.914135	2.92665	0.0113157	0.0086017	0.0886121	0.083729
chr1	50582617	50582699	448465	0	-	0.402439	(0.378,0.408]	chr1	54198	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	FAF1	ENSG00000185104.21	ENST00000396153.7:ENST00000494400.5:ENST00000472808.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	101	2	2.78931	2.9140949999999997	3.03888	0.00102794	6.20851e-4	0.029231300000000002	0.0223951
chr7	44061213	44061313	3314046	0	+	0.53	(0.515,0.57]	chr7	307832	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	DBNL	ENSG00000136279.21	ENST00000490734.6:ENST00000441840.7:ENST00000448521.6:ENST00000429716.5:ENST00000468694.5:ENST00000494774.5:ENST00000411855.5:ENST00000497184.5:ENST00000432854.5:ENST00000449997.1:ENST00000452661.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	39	2	1.53845	2.91383	4.28921	0.0475376	0.00990051	0.153019	0.0877296
chrX	24075258	24075354	7630948	0	+	0.4375	(0.408,0.44]	chrX	781493	15	INTRON	INTRON	EIF2S3	ENSG00000130741.11	ENST00000253039.9:ENST00000457332.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	238	2	2.68356	2.9138200000000003	3.14408	3.71483e-5	2.17806e-5	0.00489458	0.00381314
chrX	138930431	138930531	7900867	0	-	0.41	(0.408,0.44]	chrX	804239	654	INTRON	INTRON	FGF13	ENSG00000129682.16	ENST00000441825.8:ENST00000626909.2:ENST00000436198.5:ENST00000455663.5:ENST00000448673.1:ENST00000421460.1	protein_coding	protein_coding	protein_coding	protein_coding	4	39	2	1.49523	2.913805	4.33238	0.0534846	0.0218901	0.180041	0.11491
chr1	160336007	160336099	572247	0	-	0.445652	(0.44,0.476]	chr1	69366	3	INTRON	INTRON	COPA	ENSG00000122218.17	ENST00000241704.8:ENST00000696204.1:ENST00000696203.1:ENST00000649963.1:ENST00000696208.1:ENST00000696207.1:ENST00000368069.7:ENST00000647693.1:ENST00000649787.1:ENST00000650154.1:ENST00000647799.1:ENST00000648805.1:ENST00000647683.1:ENST00000649231.1:ENST00000696209.1:ENST00000696210.1:ENST00000696211.1:ENST00000696212.1:ENST00000696214.1:ENST00000696213.1:ENST00000696215.1:ENST00000541366.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	73	2	2.1762	2.9137750000000002	3.65135	0.0092251	6.34922e-4	0.0855292	0.023163
chr10	72732058	72732156	4450493	0	+	0.418367	(0.408,0.44]	chr10	410754	10	INTRON	INTRON	MCU	ENSG00000156026.15	ENST00000373053.8:ENST00000357157.10:ENST00000604679.5:ENST00000604372.5:ENST00000603649.5:ENST00000605597.5:ENST00000536019.5:ENST00000604152.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	46	2	2.51492	2.913745	3.31257	0.0329839	0.00198621	0.133816	0.0411469
chr6	41927840	41927938	2864599	0	+	0.357143	(0.35,0.378]	chr6	270919	3	SS5_PROX	SS5_PROX:INTRON	BYSL	ENSG00000112578.10	ENST00000230340.9:ENST00000489290.1:ENST00000475702.1:ENST00000372996.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	33	2	1.75561	2.913735	4.07186	0.0739399	0.0279478	0.190914	0.137011
chr1	21753319	21753419	396566	0	-	0.46	(0.44,0.476]	chr1	47331	2	SS3_PROX	SS3_PROX:INTRON	USP48	ENSG00000090686.16	ENST00000400301.5:ENST00000308271.14:ENST00000529637.5:ENST00000421625.6:ENST00000527823.5:ENST00000532737.1	protein_coding	protein_coding	protein_coding	protein_coding	17	247	2	2.2592	2.9136100000000003	3.56802	1.24509e-4	1.21628e-5	0.0095325300000000009	0.0027737
chr15	85110712	85110810	6090237	0	+	0.387755	(0.378,0.408]	chr15	579576	12	INTRON	INTRON	PDE8A	ENSG00000073417.15	ENST00000310298.8:ENST00000557957.5:ENST00000394553.6:ENST00000339708.9:ENST00000478717.5:ENST00000485596.5:ENST00000559742.5:ENST00000560789.5:ENST00000557819.6:ENST00000558543.5:ENST00000557954.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	35	2	1.72045	2.9135299999999997	4.10661	0.0424671	0.0399023	0.161763	0.143072
chr7	149003518	149003610	3670785	0	-	0.23913	[0,0.28]	chr7	340645	6	UTR3	UTR3:EXON_MRNA	PDIA4	ENSG00000155660.11	ENST00000652332.1:ENST00000286091.9	protein_coding	protein_coding	protein_coding	protein_coding	15	337	2	2.34017	2.91348	3.48679	2.99649e-4	8.72359e-5	0.0155054	0.00839582
chr1	2234960	2235059	2232	0	+	0.515152	(0.476,0.515]	chr1	553	19	INTRON	INTRON	SKI	ENSG00000157933.10	ENST00000378536.5:ENST00000508416.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	97	2	2.61871	2.9134599999999997	3.20821	0.00174257	3.05489e-4	0.0375363	0.0155972
chr11	118787404	118787502	5046334	0	-	0.438776	(0.408,0.44]	chr11	475805	10	EXON_MRNA	EXON_MRNA:INTRON	DDX6	ENSG00000110367.14	ENST00000534980.7:ENST00000620157.4:ENST00000526070.2:ENST00000525082.1:ENST00000531971.1:ENST00000533239.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	48	2	2.58179	2.913445	3.2451	0.024638	0.00337792	0.131869	0.0516884
chr7	23409674	23409773	3503055	0	-	0.323232	(0.32,0.35]	chr7	326892	42	INTRON	INTRON	IGF2BP3	ENSG00000136231.14	ENST00000258729.8:ENST00000421467.6:ENST00000468263.5:ENST00000479504.5:ENST00000466809.6:ENST00000491719.5:ENST00000465058.5:ENST00000469723.5:ENST00000476938.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	85	2	2.18777	2.91337	3.63897	0.00951422	9.34231e-4	0.0863913	0.0280484
chr1	28581251	28581350	409418	0	-	0.50505	(0.476,0.515]	chr1	49299	3	EXON_MRNA	EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SNHG12	ENSG00000197989.15	ENST00000648127.1:ENST00000470977.6:ENST00000531126.7:ENST00000461832.2:ENST00000481368.6:ENST00000692541.1:ENST00000693199.1:ENST00000461448.6:ENST00000481220.6:ENST00000474814.1:ENST00000475441.6:ENST00000488745.5:ENST00000483436.5:ENST00000650239.1:ENST00000648251.1:ENST00000464115.1:ENST00000648327.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	2	30	2	1.72558	2.913355	4.10113	0.0767648	0.0226984	0.196164	0.124921
chr10	3114312	3114410	4382013	0	+	0.510204	(0.476,0.515]	chr10	404128	4	INTRON	INTRON	PFKP	ENSG00000067057.18	ENST00000381125.9:ENST00000381075.7:ENST00000678206.1:ENST00000678089.1:ENST00000676796.1:ENST00000415005.6:ENST00000413079.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	30	2	1.72558	2.913355	4.10113	0.0767648	0.0226984	0.196164	0.124921
chr10	68520498	68520597	4640214	0	-	0.515152	(0.476,0.515]	chr10	426805	24	INTRON	INTRON	SLC25A16	ENSG00000122912.15	ENST00000609923.6:ENST00000493963.5:ENST00000491102.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	30	2	1.72558	2.913355	4.10113	0.0767648	0.0226984	0.196164	0.124921
chr11	48040603	48040703	4789819	0	+	0.48	(0.476,0.515]	chr11	443265	592	INTRON	INTRON	PTPRJ	ENSG00000149177.14	ENST00000418331.7:ENST00000440289.6:ENST00000527952.1:ENST00000534219.5	protein_coding	protein_coding	protein_coding	protein_coding	2	30	2	1.72558	2.913355	4.10113	0.0767648	0.0226984	0.196164	0.124921
chr12	50148371	50148471	5322982	0	-	0.49	(0.476,0.515]	chr12	507512	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	CERS5	ENSG00000139624.14	ENST00000317551.12:ENST00000422340.6:ENST00000551697.5:ENST00000380189.8:ENST00000547787.5:ENST00000438450.6:ENST00000542320.5:ENST00000547800.2:ENST00000549389.5:ENST00000550258.5:ENST00000547455.5:ENST00000546514.1:ENST00000549942.1:ENST00000550899.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	30	2	1.72558	2.913355	4.10113	0.0767648	0.0226984	0.196164	0.124921
chr4	73125512	73125612	2159478	0	-	0.48	(0.476,0.515]	chr4	212705	2	SS3_PROX	SS3_PROX:INTRON	ANKRD17	ENSG00000132466.20	ENST00000358602.9:ENST00000558247.5:ENST00000330838.10:ENST00000509867.6:ENST00000561029.1:ENST00000514252.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	30	2	1.72558	2.913355	4.10113	0.0767648	0.0226984	0.196164	0.124921
chr8	97693479	97693579	3809557	0	+	0.49	(0.476,0.515]	chr8	352866	19	INTRON	INTRON	MTDH	ENSG00000147649.10	ENST00000336273.8:ENST00000519934.5:ENST00000519293.1:ENST00000521933.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	30	2	1.72558	2.913355	4.10113	0.0767648	0.0226984	0.196164	0.124921
chr7	87160259	87160358	3345701	0	+	0.424242	(0.408,0.44]	chr7	311631	44	INTRON	INTRON	DMTF1	ENSG00000135164.19	ENST00000413276.6:ENST00000447863.5:ENST00000579677.5:ENST00000425406.5:ENST00000446796.6:ENST00000420131.5:ENST00000414630.6:ENST00000547146.6:ENST00000579850.5:ENST00000453049.5:ENST00000331242.12:ENST00000430405.7:ENST00000449088.7:ENST00000448598.5:ENST00000428819.5:ENST00000432937.6:ENST00000584619.5:ENST00000432366.6:ENST00000423590.6:ENST00000394703.9:ENST00000584457.5:ENST00000580710.5:ENST00000579592.5:ENST00000434534.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	16	297	2	2.76815	2.913325	3.0585	6.77089e-5	1.6975e-6	0.00726441	7.87725e-4
chr7	129003323	129003422	3636061	0	-	0.454545	(0.44,0.476]	chr7	338116	17	INTRON	INTRON	TNPO3	ENSG00000064419.14	ENST00000627585.2:ENST00000265388.10:ENST00000471234.5:ENST00000482320.5:ENST00000471166.1	protein_coding	protein_coding	protein_coding	protein_coding	2	45	2	2.74063	2.91327	3.08591	0.0176095	0.00481262	0.105143	0.0638089
chr15	25345479	25345579	6120877	0	-	0.46	(0.44,0.476]	chr15	582838	1	SS5_PROX	SS5_PROX:INTRON	UBE3A	ENSG00000114062.22	ENST00000648336.2:ENST00000438097.6:ENST00000635914.1:ENST00000638155.1:ENST00000637886.1:ENST00000638011.1:ENST00000636667.1:ENST00000649550.1:ENST00000650110.1:ENST00000630424.2:ENST00000566215.5:ENST00000428984.6:ENST00000626176.2:ENST00000604860.3:ENST00000675177.1:ENST00000675593.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	45	2	2.80275	2.913205	3.02366	0.0146513	0.00603307	0.0982604	0.0700813
chr2	151444298	151444388	893565	0	+	0.455556	(0.44,0.476]	chr2	98964	2	INTRON	INTRON	RIF1	ENSG00000080345.18	ENST00000453091.6:ENST00000428287.6:ENST00000444746.7:ENST00000243326.9:ENST00000414861.6:ENST00000430328.6	protein_coding	protein_coding	protein_coding	protein_coding	2	45	2	2.80275	2.913205	3.02366	0.0146513	0.00603307	0.0982604	0.0700813
chr11	47551992	47552092	4950392	0	-	0.29	(0.28,0.32]	chr11	464246	274	INTRON	INTRON	CELF1	ENSG00000149187.19	ENST00000310513.10:ENST00000687097.1:ENST00000531165.5:ENST00000530151.5:ENST00000525841.5:ENST00000526419.1	protein_coding	protein_coding	protein_coding	protein_coding	7	160	2	2.30627	2.9130849999999997	3.5199	0.00291498	8.86821e-5	0.0480147	0.00792076
chr6	2341768	2341868	2785638	0	+	0.25	[0,0.28]	chr6	263097	120	INTRON	INTRON	GMDS-DT	ENSG00000250903.10	ENST00000657072.1:ENST00000529893.6:ENST00000659523.1:ENST00000659643.1:ENST00000660978.1:ENST00000691004.1:ENST00000664738.1:ENST00000532124.6:ENST00000691547.1:ENST00000654526.1:ENST00000670895.1:ENST00000532564.8:ENST00000685772.1:ENST00000687264.1:ENST00000660533.1:ENST00000531092.6:ENST00000524770.6:ENST00000657589.1:ENST00000607519.2:ENST00000534441.5:ENST00000534468.1:ENST00000530346.6:ENST00000662000.1:ENST00000665610.1:ENST00000654970.1:ENST00000534160.1	lncRNA	lncRNA	lncRNA	lncRNA	11	274	2	2.40937	2.91308	3.41679	4.83369e-4	1.20961e-4	0.0199261	0.00992813
chr6	34890099	34890198	2849280	0	+	0.59596	(0.57,1]	chr6	269222	1	INTRON	INTRON	ANKS1A	ENSG00000064999.15	ENST00000360359.5:ENST00000649117.1:ENST00000650178.1	protein_coding	protein_coding	protein_coding	protein_coding	3	33	2	2.42282	2.913075	3.40333	0.00879576	9.20604e-4	0.0790073	0.0278392
chr7	158771450	158771549	3689226	0	-	0.575758	(0.57,1]	chr7	342387	33	INTRON	INTRON	ESYT2	ENSG00000117868.18	ENST00000251527.10:ENST00000275418.13:ENST00000652148.1	protein_coding	protein_coding	protein_coding	protein_coding	3	33	2	2.42282	2.913075	3.40333	0.00879576	9.20604e-4	0.0790073	0.0278392
chr1	213071141	213071241	310899	0	+	0.55	(0.515,0.57]	chr1	35906	1	SS5_PROX	SS5_PROX:INTRON	RPS6KC1	ENSG00000136643.12	ENST00000615329.4:ENST00000543354.5:ENST00000614059.4:ENST00000543470.5:ENST00000366960.8:ENST00000366959.4	protein_coding	protein_coding	protein_coding	protein_coding	4	37	2	1.7407	2.9130399999999996	4.08538	0.0253843	0.0242347	0.130613	0.12011
chr3	196486223	196486319	1899845	0	-	0.291667	(0.28,0.32]	chr3	190248	20	INTRON	INTRON	RNF168	ENSG00000163961.4	ENST00000318037.3:ENST00000437070.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	223	2	2.54882	2.9129300000000002	3.27704	0.00175276	9.00444e-6	0.0376491	0.00216015
chr6	45312300	45312400	3103330	0	-	0.49	(0.476,0.515]	chr6	290480	608	INTRON	INTRON	SUPT3H	ENSG00000196284.17	ENST00000475057.5:ENST00000371459.6:ENST00000371460.5:ENST00000459689.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	73	2	2.11679	2.9128049999999996	3.70882	0.0115627	4.74495e-4	0.0962115	0.0201638
chr1	160311393	160311488	571988	0	-	0.452632	(0.44,0.476]	chr1	69324	13	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	COPA	ENSG00000122218.17	ENST00000241704.8:ENST00000696204.1:ENST00000696203.1:ENST00000696202.1:ENST00000649963.1:ENST00000696208.1:ENST00000696207.1:ENST00000696206.1:ENST00000649676.1:ENST00000368069.7:ENST00000647693.1:ENST00000649787.1:ENST00000650154.1:ENST00000647799.1:ENST00000648805.1:ENST00000647683.1:ENST00000649231.1:ENST00000648501.1:ENST00000696209.1:ENST00000696210.1:ENST00000696211.1:ENST00000647899.1:ENST00000696212.1:ENST00000696214.1:ENST00000696213.1:ENST00000696215.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	113	2	2.91252	2.91269	2.91286	0.00164027	1.07786e-4	0.0369207	0.00878438
chr2	151426414	151426513	893376	0	+	0.545455	(0.515,0.57]	chr2	98908	28	INTRON	INTRON	RIF1	ENSG00000080345.18	ENST00000453091.6:ENST00000428287.6:ENST00000444746.7:ENST00000243326.9:ENST00000414861.6:ENST00000430328.6	protein_coding	protein_coding	protein_coding	protein_coding	8	130	2	2.7402	2.9124800000000004	3.08476	3.10265e-4	2.88369e-5	0.0162055	0.00425384
chr5	138560931	138561023	2732757	0	-	0.326087	(0.32,0.35]	chr5	257452	1	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	HSPA9	ENSG00000113013.16	ENST00000677693.1:ENST00000677064.1:ENST00000678300.1:ENST00000677425.1:ENST00000649578.2:ENST00000677988.1:ENST00000297185.9:ENST00000677527.1:ENST00000678794.1:ENST00000677553.1:ENST00000678384.1:ENST00000678051.1:ENST00000677066.1:ENST00000649692.2:ENST00000678551.1:ENST00000501917.7:ENST00000524109.2:ENST00000507115.6:ENST00000507097.5:ENST00000504902.6:ENST00000508003.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	117	2	2.63115	2.912305	3.19346	0.00608073	8.63465e-5	0.0676501	0.00783027
chr12	56682199	56682298	5336020	0	-	0.373737	(0.35,0.378]	chr12	510192	88	INTRON	INTRON	PTGES3	ENSG00000110958.16	ENST00000537473.2:ENST00000614328.4:ENST00000262033.11:ENST00000414274.7:ENST00000436399.6:ENST00000448157.6:ENST00000456859.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	147	2	2.43211	2.9123	3.39249	4.8894e-4	2.19246e-4	0.0199693	0.0135522
chr7	128534729	128534829	3407391	0	+	0.45	(0.44,0.476]	chr7	318333	6	INTRON	INTRON	ENSG00000280828	ENSG00000280828.1	ENST00000479267.2	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	6	111	2	2.73418	2.912285	3.09039	7.4601e-4	3.00142e-4	0.0251072	0.0155054
chr5	140404369	140404469	2502851	0	+	0.28	[0,0.28]	chr5	239166	17	INTRON	INTRON	ANKHD1	ENSG00000131503.21	ENST00000297183.10:ENST00000616482.4:ENST00000360839.7:ENST00000421134.5:ENST00000394723.7:ENST00000511151.5:ENST00000394722.7	protein_coding	protein_coding	protein_coding	protein_coding	2	64	2	2.64309	2.912235	3.18138	0.0308646	0.00487606	0.13151	0.0640618
chr21	22283405	22283505	7385202	0	+	0.41	(0.408,0.44]	chr21	752727	702	INTRON	INTRON	ENSG00000226043	ENSG00000226043.2	ENST00000667099.1:ENST00000654607.1:ENST00000444130.1	lncRNA	lncRNA	lncRNA	lncRNA	6	118	2	2.88568	2.912185	2.93869	5.30887e-4	2.73901e-4	0.0212758	0.0147448
chr8	48020568	48020668	3752358	0	+	0.39	(0.378,0.408]	chr8	349044	116	INTRON	INTRON	UBE2V2	ENSG00000169139.12	ENST00000523432.5:ENST00000521346.5:ENST00000523111.7:ENST00000518360.5:ENST00000517630.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	63	2	2.86955	2.91207	2.95459	0.00957623	0.00159247	0.0820838	0.0367961
chrX	139919923	139920023	7905774	0	-	0.32	(0.28,0.32]	chrX	804457	878	INTRON	INTRON	ATP11C	ENSG00000101974.15	ENST00000370557.5:ENST00000682941.1:ENST00000485626.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	58	2	2.73945	2.9120350000000004	3.08462	0.017681	0.0078976	0.11319	0.076155
chr7	129233336	129233436	3409555	0	+	0.47	(0.44,0.476]	chr7	318776	75	INTRON	INTRON	AHCYL2	ENSG00000158467.17	ENST00000325006.8:ENST00000446544.6	protein_coding	protein_coding	protein_coding	protein_coding	5	85	2	2.55734	2.9120150000000002	3.26669	0.00305435	7.72402e-4	0.0493883	0.0255867
chr1	186372294	186372388	604401	0	-	0.542553	(0.515,0.57]	chr1	72189	9	INTRON	INTRON	TPR	ENSG00000047410.14	ENST00000367478.9:ENST00000474852.1:ENST00000613151.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	83	2	2.79572	2.911955	3.02819	7.81057e-4	5.08572e-4	0.0257168	0.0202333
chr7	92270203	92270303	3353034	0	+	0.47	(0.44,0.476]	chr7	312479	233	INTRON	INTRON	ANKIB1	ENSG00000001629.10	ENST00000265742.8	protein_coding	protein_coding	protein_coding	protein_coding	7	125	2	2.73339	2.91189	3.09039	7.4601e-4	1.37991e-4	0.0251072	0.0101125
chr5	57243768	57243868	2358762	0	+	0.45	(0.44,0.476]	chr5	227598	62	INTRON	INTRON	GPBP1	ENSG00000062194.16	ENST00000424459.7:ENST00000514387.6:ENST00000506184.7:ENST00000511209.5:ENST00000264779.6:ENST00000513524.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	46	2	2.46135	2.91183	3.36231	0.0374637	0.00161678	0.140008	0.0369204
chr11	68478494	68478593	4817510	0	+	0.393939	(0.378,0.408]	chr11	448907	173	INTRON	INTRON	PPP6R3	ENSG00000110075.15	ENST00000530427.5:ENST00000528635.5:ENST00000529907.5:ENST00000533127.5:ENST00000534534.5:ENST00000529344.5:ENST00000524845.5:ENST00000393800.7:ENST00000265637.8:ENST00000524904.5:ENST00000393801.7:ENST00000265636.9:ENST00000529710.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	128	2	2.48899	2.911815	3.33464	5.72628e-4	2.59942e-4	0.0217398	0.0148796
chr1	235316418	235316518	663745	0	-	0.51	(0.476,0.515]	chr1	78552	553	INTRON	INTRON	ARID4B	ENSG00000054267.22	ENST00000349213.7:ENST00000366603.6:ENST00000264183.9:ENST00000421364.5:ENST00000491632.5:ENST00000418304.1:ENST00000466653.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	88	2	2.72078	2.9117100000000002	3.10264	0.00543163	3.2753e-4	0.0645052	0.0160995
chr18	9152443	9152543	6869087	0	+	0.36	(0.35,0.378]	chr18	680561	142	INTRON	INTRON	ANKRD12	ENSG00000101745.17	ENST00000585234.5:ENST00000262126.9:ENST00000577992.1:ENST00000540578.6:ENST00000581635.5:ENST00000400020.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	92	2	2.52804	2.91167	3.2953	0.0031465	9.79034e-4	0.0500431	0.0287765
chr1	244430756	244430855	672629	0	-	0.363636	(0.35,0.378]	chr1	79562	60	INTRON	INTRON	ADSS2	ENSG00000035687.10	ENST00000366535.4	protein_coding	protein_coding	protein_coding	protein_coding	3	66	2	2.28125	2.911555	3.54186	0.0182271	8.14353e-4	0.107842	0.02604
chr10	49966850	49966950	4432880	0	+	0.32	(0.28,0.32]	chr10	408699	80	INTRON	INTRON	TIMM23B:TIMM23B-AGAP6	ENSG00000204152.14:ENSG00000178440.8	ENST00000478381.5:ENST00000651259.3:ENST00000651763.1:ENST00000651208.1:ENST00000652716.1:ENST00000483296.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	77	2	2.47203	2.911555	3.35108	0.0114089	0.00221345	0.0886611	0.0435144
chr5	141605420	141605519	2740053	0	-	0.313131	(0.28,0.32]	chr5	258168	168	INTRON	INTRON	DIAPH1	ENSG00000131504.18	ENST00000647433.1:ENST00000389054.8:ENST00000518047.5:ENST00000523100.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	77	2	2.47203	2.911555	3.35108	0.0114089	0.00221345	0.0886611	0.0435144
chr10	87308034	87308126	4661042	0	-	0.315217	(0.28,0.32]	chr10	429460	6	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	NUTM2A-AS1	ENSG00000223482.9	ENST00000692417.1:ENST00000688214.1:ENST00000659257.1:ENST00000671543.1:ENST00000451940.6:ENST00000687947.1:ENST00000663644.1:ENST00000684884.1:ENST00000664664.1:ENST00000446751.6:ENST00000456104.5:ENST00000433530.7:ENST00000688257.1:ENST00000433920.5:ENST00000687925.1:ENST00000666515.2:ENST00000688926.1:ENST00000447424.6:ENST00000690598.1:ENST00000663113.1:ENST00000667520.2:ENST00000693252.1:ENST00000687827.1:ENST00000687141.1:ENST00000654503.2:ENST00000420424.1:ENST00000655272.2:ENST00000668676.1:ENST00000653080.1:ENST00000690287.1:ENST00000413722.6:ENST00000653238.1:ENST00000660454.1:ENST00000688790.1	lncRNA	lncRNA	lncRNA	lncRNA	2	57	2	2.86113	2.9115	2.96187	0.0122675	0.0114995	0.0969406	0.0889104
chr13	98574794	98574894	5643770	0	-	0.3	(0.28,0.32]	chr13	537505	529	INTRON	INTRON	STK24	ENSG00000102572.15	ENST00000539966.6:ENST00000397517.6:ENST00000491878.5:ENST00000481288.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	57	2	2.86113	2.9115	2.96187	0.0122675	0.0114995	0.0969406	0.0889104
chr9	124737845	124737945	4348881	0	-	0.51	(0.476,0.515]	chr9	399261	41	INTRON	INTRON	NR6A1	ENSG00000148200.17	ENST00000487099.7:ENST00000373584.7:ENST00000416460.6:ENST00000344523.8	protein_coding	protein_coding	protein_coding	protein_coding	7	124	2	1.98495	2.9114500000000003	3.83795	0.00740375	7.80913e-6	0.0743293	0.00200563
chr2	55042016	55042116	1121325	0	-	0.31	(0.28,0.32]	chr2	120163	134	INTRON	INTRON	RTN4	ENSG00000115310.19	ENST00000404909.5:ENST00000394611.6:ENST00000317610.11:ENST00000357732.8:ENST00000337526.11:ENST00000357376.7:ENST00000405240.5:ENST00000438462.1:ENST00000427710.5	protein_coding	protein_coding	protein_coding	protein_coding	15	341	2	2.81001	2.911435	3.01286	1.11816e-4	1.75455e-5	0.00947408	0.00318885
chr10	16743944	16744044	4566711	0	-	0.47	(0.44,0.476]	chr10	421284	164	INTRON	INTRON	RSU1	ENSG00000148484.18	ENST00000345264.10:ENST00000377921.7:ENST00000602389.1:ENST00000464074.6:ENST00000377911.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	34	2	1.69402	2.911225	4.12843	0.0456129	0.0337192	0.164236	0.134145
chr8	18002876	18002975	3708570	0	+	0.444444	(0.44,0.476]	chr8	343990	89	INTRON	INTRON	PCM1	ENSG00000078674.19	ENST00000325083.13:ENST00000519253.5:ENST00000524226.5:ENST00000522275.5	protein_coding	protein_coding	protein_coding	protein_coding	3	34	2	1.69402	2.911225	4.12843	0.0456129	0.0337192	0.164236	0.134145
chr9	132910288	132910378	4368509	0	-	0.4	(0.378,0.408]	chr9	401766	7	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	TSC1	ENSG00000165699.15	ENST00000298552.9:ENST00000440111.6:ENST00000545250.5:ENST00000644097.1:ENST00000646625.1:ENST00000642627.1:ENST00000647534.1:ENST00000643875.1:ENST00000645901.1:ENST00000642811.1:ENST00000642617.1:ENST00000647279.1:ENST00000643583.1:ENST00000644319.1:ENST00000644255.1:ENST00000646391.1:ENST00000643072.1:ENST00000647506.1:ENST00000643362.1:ENST00000642344.1:ENST00000642745.1:ENST00000645150.1:ENST00000642646.1:ENST00000493467.6:ENST00000647462.1:ENST00000647078.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	199	2	2.47001	2.911215	3.35242	9.53492e-4	2.5486e-6	0.0282335	0.00101667
chr1	42662065	42662160	83785	0	+	0.473684	(0.44,0.476]	chr1	10976	8	INTRON	INTRON	PPIH	ENSG00000171960.12	ENST00000372550.6:ENST00000678038.1:ENST00000677900.1:ENST00000676675.1:ENST00000304979.8:ENST00000678193.1:ENST00000678803.1:ENST00000678333.1:ENST00000677926.1:ENST00000677307.1:ENST00000440068.6:ENST00000677356.1:ENST00000679245.1:ENST00000678308.1:ENST00000678076.1:ENST00000677312.1:ENST00000677219.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	46	2	2.74372	2.9111700000000003	3.07862	0.0153007	0.0060153	0.108569	0.0674604
chr5	131538003	131538102	2718196	0	-	0.444444	(0.44,0.476]	chr5	255596	51	INTRON	INTRON	RAPGEF6	ENSG00000158987.22	ENST00000509018.6:ENST00000507093.5:ENST00000296859.10:ENST00000627212.2:ENST00000308008.10:ENST00000515170.5:ENST00000510071.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	46	2	2.74372	2.9111700000000003	3.07862	0.0153007	0.0060153	0.108569	0.0674604
chr17	50378194	50378294	6626040	0	+	0.48	(0.476,0.515]	chr17	646883	2	SS3_PROX	SS3_PROX:INTRON	EME1	ENSG00000154920.15	ENST00000393271.6:ENST00000338165.9:ENST00000510007.5:ENST00000511519.6:ENST00000511648.6:ENST00000510246.1:ENST00000513077.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	45	2	2.87879	2.911145	2.9435	0.00999149	0.00929849	0.0879541	0.0817766
chr5	81988373	81988471	2402865	0	+	0.5	(0.476,0.515]	chr5	232114	3	INTRON	INTRON	ATG10	ENSG00000152348.16	ENST00000282185.8:ENST00000355178.8:ENST00000458350.7:ENST00000513443.5:ENST00000504770.5:ENST00000513634.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	45	2	2.87879	2.911145	2.9435	0.00999149	0.00929849	0.0879541	0.0817766
chr6	43227089	43227187	3096021	0	-	0.510204	(0.476,0.515]	chr6	289833	3	INTRON	INTRON	DNPH1	ENSG00000112667.13	ENST00000230431.11:ENST00000509253.5:ENST00000393987.2	protein_coding	protein_coding	protein_coding	protein_coding	2	45	2	2.87879	2.911145	2.9435	0.00999149	0.00929849	0.0879541	0.0817766
chr15	92977547	92977647	6104495	0	+	0.53	(0.515,0.57]	chr15	581523	22	INTRON	INTRON	CHD2	ENSG00000173575.22	ENST00000626874.2:ENST00000394196.9:ENST00000635856.1:ENST00000637572.1:ENST00000636881.1:ENST00000628118.1:ENST00000625463.1:ENST00000636306.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	52	2	2.51561	2.91113	3.30665	0.00635044	0.00213226	0.0723103	0.041756
chr8	140618285	140618385	4076393	0	-	0.44	(0.408,0.44]	chr8	370285	125	INTRON	INTRON	AGO2	ENSG00000123908.12	ENST00000220592.10:ENST00000519980.5:ENST00000523609.5:ENST00000517293.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	62	2	2.33431	2.91112	3.48793	0.0129219	0.00130904	0.0990564	0.0331539
chr2	15535432	15535529	1072903	0	-	0.546392	(0.515,0.57]	chr2	114447	4	INTRON	INTRON	NBAS	ENSG00000151779.13	ENST00000281513.10	protein_coding	protein_coding	protein_coding	protein_coding	5	71	2	2.16051	2.91101	3.66151	0.0046825	4.49566e-4	0.0631419	0.0196044
chr1	23282602	23282701	399122	0	-	0.323232	(0.32,0.35]	chr1	47822	14	EXON_LNCRNA	EXON_LNCRNA	LINC01355	ENSG00000261326.4	ENST00000655082.1:ENST00000647667.1:ENST00000566551.1:ENST00000660265.1:ENST00000666981.1	lncRNA	lncRNA	lncRNA	lncRNA	2	52	2	2.68921	2.91099	3.13277	0.0230336	0.00458313	0.118056	0.0622676
chr12	112082822	112082921	5415163	0	-	0.323232	(0.32,0.35]	chr12	517230	13	INTRON	INTRON	NAA25	ENSG00000111300.10	ENST00000261745.9:ENST00000552527.5:ENST00000549711.5:ENST00000551858.1:ENST00000547133.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	52	2	2.68921	2.91099	3.13277	0.0230336	0.00458313	0.118056	0.0622676
chr1	175001876	175001974	265557	0	+	0.540816	(0.515,0.57]	chr1	30984	9	INTRON	INTRON	CACYBP	ENSG00000116161.18	ENST00000613570.4:ENST00000426793.1:ENST00000461977.1:ENST00000483307.1:ENST00000367679.7:ENST00000473925.1:ENST00000406752.1:ENST00000405362.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	39	2	2.76354	2.910965	3.05839	0.0147344	0.00485936	0.0983813	0.0640618
chr18	2748545	2748645	6865831	0	+	0.52	(0.515,0.57]	chr18	680110	5	INTRON	INTRON	SMCHD1	ENSG00000101596.17	ENST00000320876.11:ENST00000688342.1:ENST00000693213.1:ENST00000577880.5:ENST00000584897.5:ENST00000583441.2:ENST00000690757.1:ENST00000686763.1:ENST00000686864.1:ENST00000688708.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	39	2	2.76354	2.910965	3.05839	0.0147344	0.00485936	0.0983813	0.0640618
chr7	75452114	75452214	3558588	0	-	0.55	(0.515,0.57]	chr7	331545	95	INTRON	INTRON	POM121C	ENSG00000272391.6	ENST00000615331.5:ENST00000398379.2	protein_coding	protein_coding	protein_coding	protein_coding	2	39	2	2.76354	2.910965	3.05839	0.0147344	0.00485936	0.0983813	0.0640618
chr2	187053756	187053856	944518	0	+	0.53	(0.515,0.57]	chr2	103476	500	INTRON	INTRON	CALCRL-AS1	ENSG00000224063.6	ENST00000453517.5:ENST00000412276.6	lncRNA	lncRNA	lncRNA	lncRNA	2	39	2	2.83501	2.91089	2.98677	0.0117686	0.00632549	0.0894475	0.0722266
chr20	2982094	2982193	7223656	0	+	0.535354	(0.515,0.57]	chr20	733980	65	INTRON	INTRON	PTPRA	ENSG00000132670.21	ENST00000455631.5:ENST00000399903.7:ENST00000216877.10:ENST00000318266.9:ENST00000430705.5:ENST00000356147.3	protein_coding	protein_coding	protein_coding	protein_coding	2	39	2	2.83501	2.91089	2.98677	0.0117686	0.00632549	0.0894475	0.0722266
chr22	40351636	40351734	7519846	0	+	0.346939	(0.32,0.35]	chr22	768253	15	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	ADSL	ENSG00000239900.14	ENST00000623632.4:ENST00000679723.1:ENST00000623063.3:ENST00000637666.2:ENST00000680978.1:ENST00000625194.4:ENST00000681159.1:ENST00000342312.9:ENST00000636714.1:ENST00000680444.1:ENST00000480775.3:ENST00000624503.1:ENST00000637669.1:ENST00000216194.11:ENST00000675622.1:ENST00000679656.1:ENST00000636265.1:ENST00000623978.3:ENST00000477111.2:ENST00000623287.4:ENST00000679609.1:ENST00000624474.1:ENST00000680378.1:ENST00000636124.1:ENST00000638161.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	52	2	2.79707	2.9108850000000004	3.0247	0.0170923	0.00671684	0.104099	0.0738715
chr3	185810756	185810856	1886206	0	-	0.26	[0,0.28]	chr3	188573	1121	INTRON	INTRON	IGF2BP2	ENSG00000073792.16	ENST00000382199.7:ENST00000346192.7:ENST00000457616.6:ENST00000421047.3:ENST00000461957.5:ENST00000493302.5:ENST00000466476.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	143	2	2.77047	2.910815	3.05116	0.00505301	3.01064e-4	0.0621733	0.0155054
chr22	49585153	49585253	7601931	0	-	0.55	(0.515,0.57]	chr22	778566	1436	INTRON	INTRON	MIR3667HG	ENSG00000188511.13	ENST00000414287.5:ENST00000416411.1	lncRNA	lncRNA	lncRNA	lncRNA	5	84	2	2.73346	2.910675	3.08789	8.38802e-4	4.83127e-4	0.0266487	0.0199261
chr11	57334120	57334201	4953004	0	-	0.444444	(0.44,0.476]	chr11	464850	2	SS5_PROX	SS5_PROX:INTRON	SSRP1	ENSG00000149136.9	ENST00000293880.9:ENST00000278412.7:ENST00000526696.6:ENST00000529002.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	45	2	2.67572	2.910655	3.14559	0.0212064	0.00384923	0.113017	0.0562562
chr5	32402605	32402705	2598900	0	-	0.47	(0.44,0.476]	chr5	246931	1	SS5_PROX	SS5_PROX:INTRON	ZFR	ENSG00000056097.16	ENST00000265069.13	protein_coding	protein_coding	protein_coding	protein_coding	2	45	2	2.67572	2.910655	3.14559	0.0212064	0.00384923	0.113017	0.0562562
chr7	158928218	158928314	3456872	0	+	0.46875	(0.44,0.476]	chr7	323247	8	INTRON	INTRON	DYNC2I1	ENSG00000126870.16	ENST00000407559.8:ENST00000444851.5:ENST00000467220.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	45	2	2.67572	2.910655	3.14559	0.0212064	0.00384923	0.113017	0.0562562
chr2	235507737	235507837	1041472	0	+	0.45	(0.44,0.476]	chr2	111217	125	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	45	2	2.86231	2.910455	2.9586	0.012214	0.00758318	0.0910127	0.0773151
chr7	23392288	23392388	3502879	0	-	0.45	(0.44,0.476]	chr7	326877	293	INTRON	INTRON	IGF2BP3	ENSG00000136231.14	ENST00000258729.8:ENST00000421467.6:ENST00000468263.5:ENST00000492771.5:ENST00000479504.5:ENST00000466809.6:ENST00000491719.5:ENST00000465058.5:ENST00000469723.5:ENST00000474105.5:ENST00000476938.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	60	2	2.59888	2.9104	3.22192	0.00487719	0.00360821	0.0640618	0.0533855
chr17	81692022	81692113	6691099	0	+	0.472527	(0.44,0.476]	chr17	654068	6	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HGS	ENSG00000185359.14	ENST00000677161.1:ENST00000678096.1:ENST00000679191.1:ENST00000676546.1:ENST00000678387.1:ENST00000677109.1:ENST00000677484.1:ENST00000678115.1:ENST00000677243.1:ENST00000677044.1:ENST00000679336.1:ENST00000678196.1:ENST00000676462.1:ENST00000678105.1:ENST00000676478.1:ENST00000329138.9:ENST00000677225.1:ENST00000678866.1:ENST00000679275.1:ENST00000678541.1:ENST00000676729.1:ENST00000572392.2:ENST00000678846.1:ENST00000678658.1:ENST00000678893.1:ENST00000677818.1:ENST00000678313.1:ENST00000573080.1:ENST00000679168.1:ENST00000677463.1:ENST00000677872.1:ENST00000678218.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	72	2	2.38763	2.91034	3.43305	0.00394089	0.00159668	0.0573041	0.0364566
chr10	124412500	124412600	4710775	0	-	0.52	(0.515,0.57]	chr10	434735	3	SS3_PROX	SS3_PROX:INTRON	OAT	ENSG00000065154.12	ENST00000539214.5:ENST00000368845.6:ENST00000476917.5:ENST00000490096.5:ENST00000492376.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	68	2	2.83501	2.91032	2.98563	0.0117686	1.77567e-4	0.0894475	0.0116289
chr7	155684334	155684432	3452296	0	+	0.489796	(0.476,0.515]	chr7	322666	31	INTRON	INTRON	RBM33	ENSG00000184863.11	ENST00000287912.7:ENST00000401878.8:ENST00000392759.7:ENST00000307403.6:ENST00000440108.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	35	2	1.80284	2.9103049999999997	4.01777	0.0411361	0.033161	0.145899	0.1451
chrX	153758796	153758896	7911284	0	-	0.36	(0.35,0.378]	chrX	805122	199	INTRON	INTRON	PLXNB3-AS1	ENSG00000232725.1	ENST00000434284.1	lncRNA	lncRNA	lncRNA	lncRNA	2	53	2	2.48657	2.9103	3.33403	0.032907	0.00272701	0.145164	0.0467523
chr3	49768695	49768795	1694705	0	-	0.51	(0.476,0.515]	chr3	173818	199	INTRON	INTRON	IP6K1	ENSG00000176095.12	ENST00000321599.9:ENST00000395238.5:ENST00000613416.4:ENST00000468463.5:ENST00000460540.1:ENST00000498149.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	73	2	1.93059	2.91024	3.88989	0.023762	1.35929e-4	0.118822	0.0100405
chr8	31036472	31036572	3727958	0	+	0.43	(0.408,0.44]	chr8	346522	21	INTRON	INTRON	WRN	ENSG00000165392.11	ENST00000650667.1:ENST00000298139.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	85	2	2.53189	2.9102050000000004	3.28852	0.00287185	8.78846e-4	0.0474836	0.0269932
chr3	172196491	172196591	1561122	0	+	0.35	(0.32,0.35]	chr3	161562	93	INTRON	INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000469491.5:ENST00000336824.8:ENST00000416957.5:ENST00000478016.1:ENST00000443501.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	44	2	1.54741	2.910205	4.273	0.0473733	0.0368357	0.169265	0.138959
chr17	35078949	35079049	6757861	0	-	0.36	(0.35,0.378]	chr17	664148	89	INTRON	INTRON	RFFL	ENSG00000092871.17	ENST00000315249.11:ENST00000584655.5:ENST00000447669.6:ENST00000584541.1:ENST00000414419.6:ENST00000581265.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	49	2	2.60341	2.91009	3.21677	0.0275785	0.00313804	0.123904	0.0514466
chr8	41959360	41959460	3940369	0	-	0.44	(0.408,0.44]	chr8	361181	11	INTRON	INTRON	KAT6A	ENSG00000083168.11	ENST00000406337.6:ENST00000265713.8:ENST00000396930.4:ENST00000649817.1:ENST00000648335.1:ENST00000649827.1:ENST00000485568.5:ENST00000647809.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	61	2	2.26792	2.910035	3.55215	0.0179973	7.01039e-4	0.106756	0.0241881
chr1	11935952	11936052	25997	0	+	0.5	(0.476,0.515]	chr1	2949	7	INTRON	INTRON	PLOD1	ENSG00000083444.17	ENST00000485046.5:ENST00000449038.5:ENST00000196061.5:ENST00000358133.5:ENST00000429000.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	60	2	2.76855	2.9100349999999997	3.05152	0.0064848	0.00244302	0.0699952	0.0456956
chr6	85602806	85602905	3151037	0	-	0.414141	(0.408,0.44]	chr6	293857	88	INTRON	INTRON	ENSG00000271793	ENSG00000271793.2	ENST00000682083.1:ENST00000683074.1:ENST00000681965.1:ENST00000682504.1:ENST00000682106.1:ENST00000683364.1:ENST00000683436.1:ENST00000684220.1:ENST00000683909.1:ENST00000684462.1:ENST00000503906.1	protein_coding	retained_intron	protein_coding	retained_intron:nonsense_mediated_decay:processed_transcript	2	47	2	2.66579	2.9099649999999997	3.15414	0.019342	0.00469847	0.119831	0.0600108
chr19	10964310	10964409	7015589	0	+	0.494949	(0.476,0.515]	chr19	697162	22	INTRON	INTRON	SMARCA4	ENSG00000127616.20	ENST00000644737.1:ENST00000642726.1:ENST00000646484.1:ENST00000643549.1:ENST00000643296.1:ENST00000647230.1:ENST00000642628.1:ENST00000646510.1:ENST00000429416.8:ENST00000644760.1:ENST00000344626.10:ENST00000646693.2:ENST00000645460.1:ENST00000541122.6:ENST00000589677.5:ENST00000444061.8:ENST00000590574.6	protein_coding	protein_coding	protein_coding	protein_coding	3	60	2	2.48551	2.909835	3.33416	0.00756632	0.00230489	0.0773151	0.0428247
chr11	70286166	70286266	4820566	0	+	0.45	(0.44,0.476]	chr11	449385	17	INTRON	INTRON	PPFIA1	ENSG00000131626.19	ENST00000253925.12:ENST00000389547.7:ENST00000532504.5:ENST00000530746.1:ENST00000532024.1:ENST00000648755.1:ENST00000644155.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	72	2	2.42643	2.9098249999999997	3.39322	0.0033369	0.00187283	0.0528877	0.0390476
chr18	1310438	1310538	6941283	0	-	0.18	[0,0.28]	chr18	686577	63	INTRON	INTRON	LINC00470	ENSG00000132204.14	ENST00000657423.1:ENST00000657618.1:ENST00000584090.5:ENST00000660947.1:ENST00000669242.1:ENST00000660475.1:ENST00000653775.1:ENST00000661931.1:ENST00000412816.7:ENST00000577867.5:ENST00000584492.5:ENST00000667416.1:ENST00000661852.1:ENST00000657919.1:ENST00000661646.1:ENST00000667776.1:ENST00000654559.1:ENST00000661233.1:ENST00000653213.1:ENST00000659094.1:ENST00000660964.1:ENST00000577403.6:ENST00000660358.1:ENST00000669153.1:ENST00000657121.1:ENST00000655957.1:ENST00000659289.1:ENST00000665133.1:ENST00000671558.1:ENST00000666542.1:ENST00000663512.1:ENST00000582862.6:ENST00000578835.5:ENST00000669312.1:ENST00000581430.5:ENST00000581212.1:ENST00000658090.1	lncRNA	lncRNA	lncRNA	lncRNA	3	88	2	2.3719	2.90978	3.44766	0.0139689	0.00294011	0.10247	0.0483547
chr5	132944318	132944418	2725077	0	-	0.52	(0.515,0.57]	chr5	256349	67	INTRON	INTRON	AFF4	ENSG00000072364.13	ENST00000265343.10:ENST00000378595.7:ENST00000491831.5:ENST00000465484.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	42	2	2.23915	2.90975	3.58035	0.0596178	5.21239e-4	0.16883600000000001	0.0204523
chr17	48864346	48864446	6624310	0	+	0.47	(0.44,0.476]	chr17	646512	14	UTR3	UTR3:EXON_MRNA	CALCOCO2	ENSG00000136436.15	ENST00000258947.8	protein_coding	protein_coding	protein_coding	protein_coding	3	62	2	2.02558	2.909725	3.79387	0.0363567	2.19099e-4	0.138959	0.0129737
chr7	66928721	66928821	3326308	0	+	0.26	[0,0.28]	chr7	309335	61	INTRON	INTRON	TMEM248	ENSG00000106609.16	ENST00000341567.8:ENST00000607045.5:ENST00000433271.6:ENST00000413593.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	89	2	2.59706	2.90968	3.2223	0.00894925	0.00422777	0.0799922	0.0595466
chr9	123263339	123263439	4340429	0	-	0.49	(0.476,0.515]	chr9	398963	260	INTRON	INTRON	STRBP	ENSG00000165209.19	ENST00000348403.10:ENST00000360998.3:ENST00000407982.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	199	2	2.21842	2.90964	3.60086	0.00124428	1.16834e-6	0.0322969	6.23613e-4
chr10	68417155	68417255	4639203	0	-	0.49	(0.476,0.515]	chr10	426639	3	SS3_PROX	SS3_PROX:INTRON	DNA2	ENSG00000138346.15	ENST00000358410.8:ENST00000551118.6:ENST00000399179.6:ENST00000399180.3:ENST00000440722.2:ENST00000550545.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	61	2	1.29325	2.909625	4.526	0.0518525	0.00699701	0.159306	0.0754576
chr7	116867732	116867831	3385414	0	+	0.515152	(0.476,0.515]	chr7	317031	47	INTRON	INTRON	CAPZA2	ENSG00000198898.15	ENST00000464223.5:ENST00000484325.1:ENST00000414148.6:ENST00000361183.8:ENST00000449080.5:ENST00000639546.1:ENST00000426421.5:ENST00000490693.5:ENST00000417431.5:ENST00000461878.5:ENST00000466023.1:ENST00000464669.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	83	2	1.96437	2.90961	3.85485	0.0124351	1.63076e-4	0.0920366	0.0109774
chr7	157232125	157232225	3454895	0	+	0.37	(0.35,0.378]	chr7	323002	4	INTRON	INTRON	UBE3C	ENSG00000009335.18	ENST00000348165.10:ENST00000470408.5:ENST00000494532.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	66	2	2.4077	2.909545	3.41139	0.0122026	0.00143263	0.0910127	0.0347139
chr22	19382426	19382525	7553919	0	-	0.50505	(0.476,0.515]	chr22	772244	40	INTRON	INTRON	HIRA:C22orf39	ENSG00000100084.14:ENSG00000242259.9	ENST00000263208.5:ENST00000340170.8:ENST00000509549.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	134	2	2.17183	2.9095199999999997	3.64721	0.00174985	4.2033e-5	0.0386524	0.00550232
chr2	61491734	61491834	1130732	0	-	0.58	(0.57,1]	chr2	121550	3	SS5_PROX	SS5_PROX:INTRON	XPO1	ENSG00000082898.19	ENST00000677110.1:ENST00000678113.1:ENST00000676553.1:ENST00000677556.1:ENST00000677814.1:ENST00000676771.1:ENST00000677803.1:ENST00000677239.1:ENST00000678790.1:ENST00000677928.1:ENST00000678182.1:ENST00000677150.1:ENST00000678172.1:ENST00000678360.1:ENST00000678081.1:ENST00000676889.1:ENST00000676783.1:ENST00000679035.1:ENST00000677422.1:ENST00000677417.1:ENST00000677813.1:ENST00000676999.1:ENST00000676667.1:ENST00000678263.1:ENST00000678877.1:ENST00000677933.1:ENST00000680228.1:ENST00000677289.1:ENST00000677190.1:ENST00000481073.6:ENST00000677476.1:ENST00000469337.2:ENST00000401558.7:ENST00000428210.5:ENST00000677290.1:ENST00000677850.1:ENST00000676778.1:ENST00000451765.6:ENST00000676789.1:ENST00000678741.1:ENST00000404992.6:ENST00000406957.5:ENST00000677157.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	46	2	2.55134	2.90947	3.2676	0.00176203	6.11018e-4	0.0376652	0.0223951
chr3	177098165	177098265	1871444	0	-	0.36	(0.35,0.378]	chr3	187393	3	SS5_PROX	SS5_PROX:INTRON	TBL1XR1	ENSG00000177565.18	ENST00000457928.7:ENST00000430069.5:ENST00000673974.1:ENST00000631253.2:ENST00000352800.10:ENST00000422442.6:ENST00000428970.5:ENST00000424913.5:ENST00000437738.5:ENST00000431421.5:ENST00000635794.1:ENST00000630796.2:ENST00000450267.5:ENST00000630833.2:ENST00000431674.5:ENST00000422066.5:ENST00000443315.5:ENST00000627825.2:ENST00000427349.5:ENST00000413084.5:ENST00000637137.1:ENST00000491623.2:ENST00000637544.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	162	2	2.8394	2.909445	2.97949	4.02507e-4	8.52602e-5	0.0185763	0.00781265
chr1	171528044	171528144	253651	0	+	0.36	(0.35,0.378]	chr1	30151	2	SS5_PROX	SS5_PROX:INTRON	PRRC2C	ENSG00000117523.18	ENST00000647382.2:ENST00000367742.7:ENST00000476522.5:ENST00000338920.8:ENST00000426496.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	147	2	2.71175	2.90942	3.10709	0.00138349	3.91305e-5	0.0338784	0.00505936
chr5	135032941	135033038	2728234	0	-	0.670103	(0.57,1]	chr5	256767	2	EXON_LNCRNA	EXON_LNCRNA:INTRON	PITX1	ENSG00000069011.16	ENST00000265340.12:ENST00000506438.5:ENST00000503586.1:ENST00000507253.5:ENST00000502676.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	99	2	2.68085	2.9091050000000003	3.13736	1.14119e-4	4.07997e-6	0.0091431	0.00146291
chr1	173867332	173867429	587086	0	-	0.515464	(0.515,0.57]	chr1	70638	4	EXON_LNCRNA	EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GAS5	ENSG00000234741.9	ENST00000687189.1:ENST00000689238.1:ENST00000687549.1:ENST00000687435.1:ENST00000687987.1:ENST00000686995.1:ENST00000689958.1:ENST00000687063.1:ENST00000689895.1:ENST00000690228.1:ENST00000688573.1:ENST00000412059.6:ENST00000685107.1:ENST00000449289.6:ENST00000691213.1:ENST00000436285.6:ENST00000436656.6:ENST00000422008.6:ENST00000691137.1:ENST00000450589.6:ENST00000448718.6:ENST00000693348.1:ENST00000690349.1:ENST00000690761.1:ENST00000687022.1:ENST00000686878.1:ENST00000430245.5:ENST00000422183.6:ENST00000442067.6:ENST00000693450.1:ENST00000690448.1:ENST00000416952.6:ENST00000688895.1:ENST00000687710.1:ENST00000693030.1:ENST00000692671.1:ENST00000688557.1:ENST00000456812.7:ENST00000431268.5:ENST00000455838.6:ENST00000449589.6:ENST00000444470.6:ENST00000693469.1:ENST00000685758.1:ENST00000458220.2:ENST00000687409.1:ENST00000688952.1:ENST00000689860.1:ENST00000686918.1:ENST00000691056.1:ENST00000689469.1:ENST00000685039.1:ENST00000414075.6:ENST00000692994.1:ENST00000691982.1:ENST00000690172.1:ENST00000686460.1:ENST00000691712.1:ENST00000685159.1:ENST00000685008.1:ENST00000452197.5:ENST00000454068.5:ENST00000650796.1:ENST00000451607.5:ENST00000693521.1:ENST00000690941.1:ENST00000693459.1:ENST00000686231.1:ENST00000684949.1:ENST00000425771.6:ENST00000432536.5:ENST00000456293.5:ENST00000443799.5:ENST00000421068.5	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	18	261	2	2.55305	2.9090049999999996	3.26496	1.95912e-5	8.45526e-6	0.00358497	0.00210337
chr1	227296805	227296905	651504	0	-	0.27	[0,0.28]	chr1	77110	317	INTRON	INTRON	CDC42BPA	ENSG00000143776.20	ENST00000366766.8:ENST00000366769.7:ENST00000334218.9:ENST00000366767.7:ENST00000366764.8:ENST00000478573.6:ENST00000682551.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	119	2	2.21781	2.909	3.60019	0.00546213	0.00172089	0.0670258	0.0374701
chr4	159133399	159133499	2073803	0	+	0.42	(0.408,0.44]	chr4	205172	288	INTRON	INTRON	RAPGEF2	ENSG00000109756.10	ENST00000644474.1:ENST00000691494.1:ENST00000505478.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	130	2	1.77938	2.9089799999999997	4.03858	0.00394768	1.05823e-4	0.0574012	0.00920724
chr9	4998601	4998701	4095956	0	+	0.34	(0.32,0.35]	chr9	373235	122	INTRON	INTRON	JAK2	ENSG00000096968.14	ENST00000636127.1:ENST00000476574.5:ENST00000381652.4	protein_coding	protein_coding	protein_coding	protein_coding	2	53	2	2.4458	2.90895	3.3721	0.0425977	0.00182912	0.148082	0.0396683
chr6	157840788	157840888	3015938	0	+	0.33	(0.32,0.35]	chr6	281353	107	INTRON	INTRON	SNX9	ENSG00000130340.17	ENST00000614703.4:ENST00000614800.4:ENST00000680863.1:ENST00000679814.1:ENST00000680464.1:ENST00000681186.1:ENST00000679732.1:ENST00000681183.1:ENST00000681534.1:ENST00000681651.1:ENST00000680089.1:ENST00000680078.1:ENST00000680974.1:ENST00000680095.1:ENST00000680015.1:ENST00000681138.1:ENST00000392185.8:ENST00000679790.1:ENST00000680495.1:ENST00000679691.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	43	2	1.45026	2.908905	4.36755	0.0622478	0.0300552	0.194723	0.129138
chr15	44451191	44451291	6014587	0	+	0.41	(0.408,0.44]	chr15	572914	227	INTRON	INTRON	CTDSPL2	ENSG00000137770.14	ENST00000558791.5:ENST00000260327.9:ENST00000560834.1:ENST00000558966.5:ENST00000559793.5:ENST00000558968.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	34	2	1.69566	2.9087650000000003	4.12187	0.0453922	0.0354689	0.164236	0.137535
chr3	196499474	196499574	1899980	0	-	0.42	(0.408,0.44]	chr3	190261	104	INTRON	INTRON	RNF168	ENSG00000163961.4	ENST00000318037.3:ENST00000437070.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	34	2	1.69566	2.9087650000000003	4.12187	0.0453922	0.0354689	0.164236	0.137535
chr5	180807006	180807105	2783281	0	-	0.575758	(0.57,1]	chr5	262792	32	INTRON	INTRON	MGAT1	ENSG00000131446.17	ENST00000333055.8:ENST00000393340.7:ENST00000446023.6:ENST00000506889.1:ENST00000514438.1:ENST00000502678.1:ENST00000513431.5:ENST00000504385.5:ENST00000514760.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	25	2	1.37384	2.9087500000000004	4.44366	0.0766386	0.00210922	0.196164	0.0425419
chr20	47229525	47229625	7348224	0	-	0.52	(0.515,0.57]	chr20	749254	4	SS5_PROX	SS5_PROX:INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000467200.6:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4	protein_coding	protein_coding	protein_coding	protein_coding	10	151	2	2.17087	2.9087449999999997	3.64662	0.00101917	4.02154e-6	0.0293964	0.00144798
chr16	88659828	88659923	6539291	0	-	0.6	(0.57,1]	chr16	633746	1	INTRON	INTRON	MVD	ENSG00000167508.12	ENST00000301012.8:ENST00000569177.5:ENST00000567064.5:ENST00000568133.5:ENST00000563785.5:ENST00000568709.5:ENST00000563170.5:ENST00000562651.5:ENST00000565610.5:ENST00000563463.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	45	2	1.87172	2.908715	3.94571	0.0152293	4.59736e-5	0.0996307	0.00552588
chr7	105371351	105371451	3603730	0	-	0.26	[0,0.28]	chr7	336161	644	INTRON	INTRON	SRPK2	ENSG00000135250.17	ENST00000393651.8:ENST00000482897.5:ENST00000460391.5:ENST00000462282.5:ENST00000465112.5:ENST00000482862.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	64	2	2.86008	2.908685	2.95729	0.0177015	0.0101824	0.105304	0.089002
chr1	65435311	65435410	137337	0	+	0.373737	(0.35,0.378]	chr1	15494	35	UTR3	UTR3:EXON_MRNA:INTRON	LEPR:LEPROT	ENSG00000116678.20:ENSG00000213625.9	ENST00000371060.7:ENST00000371059.7:ENST00000349533.11:ENST00000371065.9:ENST00000613538.1	protein_coding	protein_coding	protein_coding	protein_coding	4	88	2	2.69904	2.9086350000000003	3.11823	0.00438476	5.25625e-4	0.0585064	0.0206013
chr1	230074900	230075000	334155	0	+	0.64	(0.57,1]	chr1	38926	71	INTRON	INTRON	GALNT2	ENSG00000143641.10	ENST00000494106.1:ENST00000366672.5:ENST00000488903.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	45	2	2.18579	2.908515	3.63124	0.00400391	2.87208e-4	0.0551303	0.0150568
chrX	13359479	13359579	7622551	0	+	0.3	(0.28,0.32]	chrX	780353	178	INTRON	INTRON	LINC01203	ENSG00000226985.7	ENST00000669963.1:ENST00000661545.1:ENST00000659526.1:ENST00000656410.1:ENST00000661104.1:ENST00000456091.2:ENST00000655502.1:ENST00000671651.1:ENST00000656979.1:ENST00000656271.1:ENST00000661629.1:ENST00000661464.1:ENST00000668192.1:ENST00000665887.1:ENST00000659191.1:ENST00000667868.1:ENST00000653729.1:ENST00000656111.1	lncRNA	lncRNA	lncRNA	lncRNA	5	124	2	2.36049	2.90847	3.45645	0.00700135	1.23958e-4	0.0718189	0.00952291
chr15	42516151	42516250	6009814	0	+	0.464646	(0.44,0.476]	chr15	572172	4	INTRON	INTRON	SNAP23	ENSG00000092531.10	ENST00000561526.5:ENST00000568451.5:ENST00000563765.5:ENST00000349777.5:ENST00000249647.8:ENST00000564153.5:ENST00000567094.5:ENST00000566327.5:ENST00000568331.5:ENST00000566035.5:ENST00000568859.5:ENST00000568514.5:ENST00000397138.5:ENST00000563873.5:ENST00000563830.2:ENST00000568841.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	81	2	2.9044	2.90846	2.91252	0.00164027	0.00132926	0.0369207	0.0335085
chr1	160256497	160256596	571551	0	-	0.383838	(0.378,0.408]	chr1	69176	121	INTRON	INTRON	DCAF8	ENSG00000132716.19	ENST00000326837.6:ENST00000368073.7:ENST00000368074.6:ENST00000461888.5:ENST00000475733.5:ENST00000610139.5:ENST00000447377.5:ENST00000495887.1:ENST00000440682.5:ENST00000407642.6:ENST00000419626.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	95	2	2.07903	2.90843	3.73783	0.00428711	4.8181e-4	0.0599065	0.0203411
chr15	89834895	89834995	6257239	0	-	0.41	(0.408,0.44]	chr15	597038	44	UTR3	UTR3:EXON_MRNA	AP3S2:ARPIN-AP3S2	ENSG00000157823.17:ENSG00000250021.7	ENST00000336418.9:ENST00000398333.7:ENST00000423566.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	134	2	2.52239	2.9083	3.29421	0.00126655	3.47956e-5	0.0325433	0.00469546
chr6	4846204	4846304	2791561	0	+	0.46	(0.44,0.476]	chr6	263602	95	INTRON	INTRON	CDYL	ENSG00000153046.18	ENST00000328908.9:ENST00000491864.1:ENST00000440139.5:ENST00000483019.1:ENST00000397588.8:ENST00000472453.5:ENST00000449732.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	60	2	2.73781	2.908215	3.07862	0.0060153	0.00276493	0.0674604	0.04867
chr5	177141802	177141902	2553780	0	+	0.38	(0.378,0.408]	chr5	243927	45	INTRON	INTRON	NSD1	ENSG00000165671.22	ENST00000508896.6:ENST00000689549.1:ENST00000354179.9:ENST00000686993.1:ENST00000689326.1:ENST00000439151.7:ENST00000510954.6:ENST00000689345.1:ENST00000347982.9:ENST00000687453.1:ENST00000685206.1:ENST00000638627.3:ENST00000644863.2:ENST00000688613.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	84	2	2.83344	2.908195	2.98295	0.00244811	9.47389e-4	0.0445777	0.0282007
chr15	27110793	27110893	5983551	0	+	0.39	(0.378,0.408]	chr15	569164	836	INTRON	INTRON	GABRG3	ENSG00000182256.13	ENST00000615808.5:ENST00000555083.5	protein_coding	protein_coding	protein_coding	protein_coding	4	76	2	2.14029	2.90819	3.67609	0.0106742	6.32264e-4	0.0917199	0.0231174
chr16	85567352	85567452	6415505	0	+	0.61	(0.57,1]	chr16	615470	106	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	7	65	2	2.40924	2.90815	3.40706	6.26777e-4	5.92509e-5	0.0230192	0.00631599
chr3	42620136	42620226	1406171	0	+	0.3	(0.28,0.32]	chr3	147669	2	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	NKTR	ENSG00000114857.19	ENST00000468735.6:ENST00000487466.5:ENST00000429888.5:ENST00000232978.13:ENST00000442970.5:ENST00000478488.1:ENST00000465584.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	285	2	2.80608	2.9080399999999997	3.01	3.11883e-4	1.45782e-5	0.016231	0.00286009
chr13	41019227	41019316	5577530	0	-	0.337079	(0.32,0.35]	chr13	533205	1	UTR5	UTR5:EXON_MRNA:INTRON	ELF1	ENSG00000120690.16	ENST00000239882.7:ENST00000405737.2	protein_coding	protein_coding	protein_coding	protein_coding	2	52	2	2.6321	2.90801	3.18392	0.0268	0.00379806	0.123349	0.0562562
chr1	245998761	245998861	675618	0	-	0.35	(0.32,0.35]	chr1	79713	103	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000391836.3:ENST00000464398.1:ENST00000453676.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	52	2	2.84812	2.9077900000000003	2.96746	0.0147575	0.00815799	0.0983813	0.0810802
chr7	127725999	127726099	3403150	0	+	0.33	(0.32,0.35]	chr7	318134	42	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000468166.5:ENST00000465900.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	52	2	2.84812	2.9077900000000003	2.96746	0.0147575	0.00815799	0.0983813	0.0810802
chr19	49159725	49159823	7089051	0	+	0.530612	(0.515,0.57]	chr19	709754	16	UTR3	UTR3:EXON_MRNA:INTRON	TRPM4	ENSG00000130529.16	ENST00000598691.5:ENST00000598697.5:ENST00000252826.10:ENST00000595519.5:ENST00000599628.5:ENST00000427978.6:ENST00000598502.5:ENST00000596338.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	71	2	2.27709	2.907765	3.53844	0.00275782	7.92613e-4	0.0486216	0.0259663
chr20	63886042	63886142	7300898	0	+	0.61	(0.57,1]	chr20	743118	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	TPD52L2	ENSG00000101150.18	ENST00000611972.4:ENST00000615907.4:ENST00000369927.8:ENST00000346249.9:ENST00000348257.9:ENST00000352482.8:ENST00000351424.8:ENST00000217121.9:ENST00000358548.4	protein_coding	protein_coding	protein_coding	protein_coding	4	39	2	2.39221	2.9077200000000003	3.42323	0.00352602	8.58388e-4	0.0546236	0.0267428
chr21	46196767	46196866	7470542	0	-	0.606061	(0.57,1]	chr21	761464	1	INTRON	INTRON	LSS	ENSG00000160285.15	ENST00000356396.8:ENST00000397728.8:ENST00000457828.6:ENST00000522411.5	protein_coding	protein_coding	protein_coding	protein_coding	4	39	2	2.39221	2.9077200000000003	3.42323	0.00352602	8.58388e-4	0.0546236	0.0267428
chr8	108242535	108242629	4023215	0	-	0.297872	(0.28,0.32]	chr8	367688	3	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	EIF3E	ENSG00000104408.11	ENST00000678042.1:ENST00000678773.1:ENST00000677409.1:ENST00000676892.1:ENST00000523674.2:ENST00000677674.1:ENST00000220849.10:ENST00000678937.1:ENST00000677084.1:ENST00000676706.1:ENST00000518100.6:ENST00000677040.1:ENST00000676698.1:ENST00000522352.6:ENST00000521297.2:ENST00000677501.1:ENST00000519030.6:ENST00000519627.2:ENST00000518345.2:ENST00000522445.6:ENST00000678334.1:ENST00000678023.1:ENST00000678797.1:ENST00000677614.1:ENST00000676642.1:ENST00000677965.1:ENST00000678901.1:ENST00000678243.1:ENST00000676663.1:ENST00000679198.1:ENST00000521614.6:ENST00000678004.1:ENST00000678881.1:ENST00000677590.1:ENST00000677272.1:ENST00000676530.1:ENST00000677746.1:ENST00000677447.1:ENST00000676548.1:ENST00000676487.1:ENST00000521440.6:ENST00000518442.5:ENST00000522887.1:ENST00000518634.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	92	2	2.61764	2.90769	3.19774	0.00548491	0.00179526	0.0648867	0.0392772
chr17	30741634	30741731	6589903	0	+	0.319588	(0.28,0.32]	chr17	640854	15	INTRON	INTRON	SUZ12P1	ENSG00000264538.7	ENST00000578070.5:ENST00000579526.5:ENST00000690405.1:ENST00000497969.6:ENST00000578195.6:ENST00000582557.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	4	91	2	2.4468	2.9076750000000002	3.36855	0.0037095	0.00305882	0.0561833	0.0494118
chr9	112311684	112311783	4317741	0	-	0.525253	(0.515,0.57]	chr9	397079	134	INTRON	INTRON	PTBP3	ENSG00000119314.16	ENST00000334318.10:ENST00000458258.5:ENST00000374257.6:ENST00000374255.6:ENST00000343327.6:ENST00000487997.1:ENST00000210227.4:ENST00000450374.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	71	2	2.07721	2.9076500000000003	3.73809	0.0067022	3.11298e-4	0.0738715	0.0162055
chr6	7152490	7152590	2798812	0	+	0.34	(0.32,0.35]	chr6	263733	113	INTRON	INTRON	RREB1	ENSG00000124782.21	ENST00000379933.7:ENST00000491191.5:ENST00000471433.5:ENST00000379938.7:ENST00000467782.5:ENST00000349384.10:ENST00000334984.10:ENST00000475946.5:ENST00000483150.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	70	2	2.82385	2.90755	2.99125	0.00958447	0.00217392	0.0820838	0.043502
chr2	169573581	169573679	1261702	0	-	0.530612	(0.515,0.57]	chr2	133689	7	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	FASTKD1	ENSG00000138399.18	ENST00000453153.7:ENST00000453929.6:ENST00000445210.1:ENST00000438035.5	protein_coding	protein_coding	protein_coding	protein_coding	17	255	2	2.51238	2.90754	3.3027	3.0694e-5	1.74415e-6	0.00442402	8.83434e-4
chr1	54034685	54034782	461398	0	-	0.536082	(0.515,0.57]	chr1	55574	17	EXON_MRNA	EXON_MRNA:INTRON	TMEM59:ENSG00000280378	ENSG00000116209.12:ENSG00000280378.1	ENST00000234831.10:ENST00000371348.5:ENST00000371344.5:ENST00000371341.5:ENST00000470395.1:ENST00000624679.1	protein_coding	protein_coding	protein_coding:TEC	protein_coding:TEC:processed_transcript	2	39	2	2.68833	2.90748	3.12663	0.0184931	0.00374498	0.108861	0.0562234
chr20	32773035	32773134	7256755	0	+	0.525253	(0.515,0.57]	chr20	737113	98	INTRON	INTRON	DNMT3B	ENSG00000088305.19	ENST00000696232.1:ENST00000328111.6:ENST00000696231.1:ENST00000348286.6:ENST00000353855.6:ENST00000696233.1:ENST00000443239.7:ENST00000696234.1:ENST00000696235.1:ENST00000456297.6:ENST00000696236.1:ENST00000696237.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	39	2	2.68833	2.90748	3.12663	0.0184931	0.00374498	0.108861	0.0562234
chr5	79614181	79614279	2398742	0	+	0.540816	(0.515,0.57]	chr5	231675	2	INTRON	INTRON	TENT2	ENSG00000164329.14	ENST00000505571.5:ENST00000423041.6:ENST00000504233.5:ENST00000453514.6:ENST00000428308.6:ENST00000515807.5:ENST00000296783.7:ENST00000514095.5:ENST00000508620.5:ENST00000503620.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	39	2	2.68833	2.90748	3.12663	0.0184931	0.00374498	0.108861	0.0562234
chr12	79912496	79912596	5376308	0	-	0.49	(0.476,0.515]	chr12	512793	392	INTRON	INTRON	PPP1R12A	ENSG00000058272.19	ENST00000261207.9:ENST00000450142.7:ENST00000437004.6:ENST00000546369.5:ENST00000550107.5:ENST00000547330.5:ENST00000550510.5	protein_coding	protein_coding	protein_coding	protein_coding	7	132	2	2.83502	2.907465	2.97991	3.10641e-4	1.72457e-4	0.0162055	0.0113919
chr11	130227467	130227566	5052980	0	-	0.515152	(0.476,0.515]	chr11	476930	9	UTR3	UTR3:EXON_MRNA	ZBTB44	ENSG00000196323.14	ENST00000357899.9:ENST00000527478.6:ENST00000445008.6:ENST00000525842.5:ENST00000397753.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	47	2	2.56868	2.9073200000000003	3.24596	0.0256676	0.00322919	0.133676	0.0507087
chr7	123738818	123738918	3632559	0	-	0.33	(0.32,0.35]	chr7	337581	292	INTRON	INTRON	WASL	ENSG00000106299.8	ENST00000223023.5	protein_coding	protein_coding	protein_coding	protein_coding	13	248	2	2.58974	2.90732	3.2249	1.43428e-4	5.26138e-5	0.0109648	0.00591845
chr4	110047842	110047941	2226220	0	-	0.414141	(0.408,0.44]	chr4	218000	21	UTR3	UTR3:EXON_MRNA	ELOVL6	ENSG00000170522.10	ENST00000394607.7:ENST00000302274.8	protein_coding	protein_coding	protein_coding	protein_coding	8	153	2	2.77917	2.90727	3.03537	3.60351e-4	5.12176e-5	0.0175741	0.00585477
chr6	3084966	3085063	2788284	0	+	0.453608	(0.44,0.476]	chr6	263326	18	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	RIPK1	ENSG00000137275.16	ENST00000678809.1:ENST00000678874.1:ENST00000380409.3:ENST00000677799.1:ENST00000677261.1:ENST00000676758.1:ENST00000676995.1:ENST00000679118.1:ENST00000479389.1:ENST00000676591.1:ENST00000259808.9:ENST00000676618.1:ENST00000678084.1:ENST00000677361.1:ENST00000676965.1:ENST00000680389.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	61	2	2.55649	2.9072500000000003	3.25801	0.00670547	0.00248185	0.0707084	0.0460771
chr1	28929464	28929564	59105	0	+	0.54	(0.515,0.57]	chr1	7621	143	INTRON	INTRON	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000647918.1:ENST00000646800.1:ENST00000644342.1:ENST00000646189.1:ENST00000482464.6:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000646260.1:ENST00000373798.5:ENST00000644600.1:ENST00000649674.1:ENST00000643173.1:ENST00000343067.9:ENST00000644780.1:ENST00000650265.1:ENST00000648181.1:ENST00000643604.1:ENST00000648891.1:ENST00000373797.2:ENST00000349460.9:ENST00000645184.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	83	2	2.57713	2.90724	3.23735	0.00176427	2.1866e-4	0.0376652	0.0129728
chr1	236805643	236805743	342599	0	+	0.48	(0.476,0.515]	chr1	39817	1	SS3_PROX	SS3_PROX:INTRON	MTR	ENSG00000116984.15	ENST00000680454.1:ENST00000366577.10:ENST00000674797.2:ENST00000652435.1:ENST00000679569.1:ENST00000650888.1:ENST00000463959.1:ENST00000535889.6:ENST00000651455.1:ENST00000681102.1:ENST00000679842.1:ENST00000681177.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	147	2	2.81334	2.9072	3.00106	2.78737e-4	8.67675e-5	0.0153269	0.00783027
chr17	28642576	28642672	6745145	0	-	0.479167	(0.476,0.515]	chr17	662677	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	KIAA0100	ENSG00000007202.15	ENST00000528896.7:ENST00000544884.5:ENST00000389003.7:ENST00000580882.5:ENST00000577417.5:ENST00000583403.5:ENST00000582901.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	111	2	2.48496	2.90714	3.32932	0.00143091	1.60666e-4	0.0340925	0.0109124
chr7	99453686	99453779	3362008	0	+	0.419355	(0.408,0.44]	chr7	314010	1	EXON_MRNA	EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CPSF4	ENSG00000160917.15	ENST00000436336.6:ENST00000292476.10:ENST00000451876.5:ENST00000441580.5:ENST00000452047.1:ENST00000471455.1:ENST00000440514.1:ENST00000469897.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	9	170	2	2.69866	2.907095	3.11553	1.59656e-4	1.01454e-4	0.0115598	0.00850967
chr3	196068954	196069054	1897415	0	-	0.47	(0.44,0.476]	chr3	189952	1	SS5_PROX	SS5_PROX:INTRON	TFRC	ENSG00000072274.13	ENST00000420415.5:ENST00000360110.9:ENST00000392396.7:ENST00000491658.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	115	2	2.78046	2.907075	3.03369	0.0028389	5.18787e-5	0.0473151	0.00587266
chr1	100057966	100058065	171804	0	+	0.393939	(0.378,0.408]	chr1	18603	76	INTRON	INTRON	ENSG00000283761:MFSD14A	ENSG00000283761.1:ENSG00000156875.14	ENST00000638792.1:ENST00000638968.1:ENST00000639040.1:ENST00000639037.1:ENST00000638779.1:ENST00000639171.1:ENST00000640238.1:ENST00000640357.1:ENST00000370152.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	47	2	2.53503	2.90705	3.27907	0.0319942	0.0023379	0.13174	0.0442989
chr7	150280952	150281052	3673224	0	-	0.57	(0.515,0.57]	chr7	340876	315	INTRON	INTRON	ACTR3C	ENSG00000106526.11	ENST00000478393.5:ENST00000683684.1:ENST00000252071.8	protein_coding	protein_coding	protein_coding	protein_coding	4	62	2	2.31902	2.90699	3.49496	0.00493032	9.61701e-4	0.0646039	0.0282401
chr19	48751583	48751683	7199279	0	-	0.51	(0.476,0.515]	chr19	729876	3	SS3_PROX	SS3_PROX:INTRON	FUT1	ENSG00000174951.12	ENST00000645652.2	protein_coding	protein_coding	protein_coding	protein_coding	6	91	2	2.07252	2.90698	3.74144	0.00436163	4.08784e-4	0.060356	0.0185763
chr14	101815628	101815728	5819040	0	+	0.41	(0.408,0.44]	chr14	551841	52	INTRON	INTRON	PPP2R5C	ENSG00000078304.20	ENST00000694906.1:ENST00000422945.6:ENST00000554442.5:ENST00000556068.5:ENST00000328724.9:ENST00000554504.1:ENST00000553890.1:ENST00000350249.7:ENST00000557621.5:ENST00000556946.1:ENST00000556307.5:ENST00000553730.5:ENST00000557714.1:ENST00000334743.9:ENST00000445439.7:ENST00000557095.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	117	2	2.77154	2.9069599999999998	3.04238	9.14134e-4	1.54233e-4	0.0278396	0.0106835
chr16	74603959	74604059	6525301	0	-	0.45	(0.44,0.476]	chr16	631842	408	INTRON	INTRON	GLG1	ENSG00000090863.12	ENST00000205061.9:ENST00000422840.7:ENST00000447066.6:ENST00000562090.5:ENST00000567951.5:ENST00000627032.2:ENST00000565260.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	200	2	2.54869	2.906955	3.26522	2.26813e-4	1.17412e-5	0.0138494	0.0025307
chr6	30491753	30491828	2840712	0	+	0.573333	(0.57,1]	chr6	266844	1	SS5_PROX	SS5_PROX:INTRON	HLA-E	ENSG00000204592.9	ENST00000376630.5	protein_coding	protein_coding	protein_coding	protein_coding	6	61	2	2.71391	2.90692	3.09993	6.82348e-4	6.63721e-5	0.0239168	0.00675077
chr6	7409000	7409098	2800030	0	+	0.5	(0.476,0.515]	chr6	263866	33	INTRON	INTRON	RIOK1	ENSG00000124784.9	ENST00000379834.7:ENST00000264874.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	61	2	2.62236	2.906775	3.19119	0.00517	0.00325748	0.0631506	0.0524329
chr6	147312511	147312608	2989799	0	+	0.484536	(0.476,0.515]	chr6	280060	6	INTRON	INTRON	STXBP5	ENSG00000164506.15	ENST00000321680.11:ENST00000367481.7:ENST00000367480.7	protein_coding	protein_coding	protein_coding	protein_coding	3	61	2	2.62236	2.906775	3.19119	0.00517	0.00325748	0.0631506	0.0524329
chr15	22945339	22945439	6119769	0	-	0.61	(0.57,1]	chr15	582653	4	SS3_PROX	SS3_PROX:INTRON	CYFIP1	ENSG00000273749.5	ENST00000617928.5:ENST00000610365.4:ENST00000621036.4:ENST00000613006.4:ENST00000611832.4:ENST00000619037.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	25	2	2.89463	2.9067600000000002	2.91889	0.00788262	0.00719009	0.076155	0.0756118
chr15	90873198	90873298	6101981	0	+	0.6	(0.57,1]	chr15	581002	1	SS5_PROX	SS5_PROX:INTRON	FURIN	ENSG00000140564.13	ENST00000268171.8:ENST00000610579.4:ENST00000680053.1:ENST00000618099.4	protein_coding	protein_coding	protein_coding	protein_coding	2	25	2	2.89463	2.9067600000000002	2.91889	0.00788262	0.00719009	0.076155	0.0756118
chr16	85621664	85621763	6416053	0	+	0.575758	(0.57,1]	chr16	615481	79	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1:ENST00000405402.6:ENST00000411612.5:ENST00000253458.12:ENST00000393243.5	protein_coding	protein_coding	protein_coding	protein_coding	2	25	2	2.89463	2.9067600000000002	2.91889	0.00788262	0.00719009	0.076155	0.0756118
chr22	21831036	21831136	7561020	0	-	0.58	(0.57,1]	chr22	773388	228	INTRON	INTRON	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	2	25	2	2.89463	2.9067600000000002	2.91889	0.00788262	0.00719009	0.076155	0.0756118
chr11	68063328	68063428	4972004	0	-	0.46	(0.44,0.476]	chr11	469379	9	INTRON	INTRON	CHKA	ENSG00000110721.12	ENST00000265689.9:ENST00000525155.5:ENST00000356135.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	73	2	2.2193	2.9067350000000003	3.59417	0.00896114	5.78231e-4	0.0800073	0.0218253
chr2	169598289	169598388	906610	0	+	0.545455	(0.515,0.57]	chr2	100021	52	INTRON	INTRON	PPIG	ENSG00000138398.17	ENST00000678088.1:ENST00000677392.1:ENST00000433207.6:ENST00000679324.1:ENST00000414307.6:ENST00000676508.1:ENST00000260970.8:ENST00000678695.1:ENST00000409714.7:ENST00000530152.5:ENST00000677750.1:ENST00000676557.1:ENST00000678721.1:ENST00000462903.6:ENST00000676756.1:ENST00000679107.1:ENST00000678499.1:ENST00000678638.1:ENST00000448752.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	139	2	2.04397	2.906715	3.76946	0.00107727	1.32384e-5	0.0300133	0.00287735
chr19	45861299	45861399	7193846	0	-	0.29	(0.28,0.32]	chr19	728658	56	INTRON	INTRON	SYMPK	ENSG00000125755.19	ENST00000245934.12:ENST00000593504.5:ENST00000599460.5:ENST00000598896.5:ENST00000602061.5:ENST00000598059.5:ENST00000594293.5:ENST00000593959.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	93	2	2.23223	2.906615	3.581	0.0109124	8.63544e-4	0.0873034	0.0266494
chr5	138512004	138512104	2732348	0	-	0.49	(0.476,0.515]	chr5	257380	4	SS3_PROX	SS3_PROX:INTRON	ETF1	ENSG00000120705.13	ENST00000360541.10:ENST00000499810.6:ENST00000503014.5:ENST00000506345.5:ENST00000512198.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	82	2	2.2792	2.90641	3.53362	0.00299196	0.00102391	0.0503888	0.029231300000000002
chr19	45519465	45519562	7080320	0	+	0.453608	(0.44,0.476]	chr19	708221	10	INTRON	INTRON	VASP	ENSG00000125753.14	ENST00000245932.11:ENST00000592139.1:ENST00000590603.1:ENST00000586014.5:ENST00000586619.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	134	2	2.66103	2.9063749999999997	3.15172	4.47456e-4	1.3147e-4	0.0191768	0.010437
chr1	47372061	47372159	97959	0	+	0.428571	(0.408,0.44]	chr1	13149	31	INTRON	INTRON	CMPK1	ENSG00000162368.14	ENST00000371873.10:ENST00000371871.8:ENST00000450808.2:ENST00000371870.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	94	2	2.36243	2.90631	3.45019	0.00152664	0.00107664	0.0353936	0.0300133
chr16	84736757	84736856	6410279	0	+	0.50505	(0.476,0.515]	chr16	615290	29	INTRON	INTRON	USP10	ENSG00000103194.16	ENST00000562743.5:ENST00000540269.6:ENST00000563892.5:ENST00000562092.1:ENST00000219473.12:ENST00000570191.5:ENST00000563048.5:ENST00000562283.5:ENST00000563386.5:ENST00000569038.5:ENST00000570053.1:ENST00000566512.1:ENST00000563023.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	80	2	2.77151	2.9062400000000004	3.04097	0.00288481	7.0601e-4	0.0475859	0.0241881
chr1	16618441	16618535	383548	0	-	0.425532	(0.408,0.44]	chr1	45153	3	EXON_LNCRNA	EXON_LNCRNA	CROCCP2	ENSG00000215908.10	ENST00000639481.1:ENST00000639594.1:ENST00000640476.1:ENST00000639456.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	5	98	2	2.33039	2.906215	3.48204	0.00598147	6.71132e-5	0.0674604	0.00678102
chr3	138795263	138795363	1831104	0	-	0.46	(0.44,0.476]	chr3	184056	248	INTRON	INTRON	PIK3CB	ENSG00000051382.9	ENST00000674063.1:ENST00000477593.5:ENST00000462898.5:ENST00000483968.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	116	2	2.77169	2.9062099999999997	3.04073	8.89744e-4	1.55969e-4	0.0274757	0.0106835
chr9	130849477	130849577	4215220	0	+	0.37	(0.35,0.378]	chr9	386432	136	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000393293.4:ENST00000318560.6	protein_coding	protein_coding	protein_coding	protein_coding	4	79	2	2.20096	2.906145	3.61133	0.0087123	9.14099e-4	0.0844834	0.0278396
chr16	16529607	16529707	6311158	0	+	0.54	(0.515,0.57]	chr16	604098	296	INTRON	INTRON	ENSG00000260126	ENSG00000260126.2	ENST00000567465.2	lncRNA	lncRNA	lncRNA	lncRNA	16	255	2	2.52562	2.9059049999999997	3.28619	5.3457e-5	1.02111e-6	0.00598316	6.26715e-4
chr2	61510775	61510852	1130942	0	-	0.480519	(0.476,0.515]	chr2	121598	3	EXON_LNCRNA	EXON_LNCRNA:INTRON	XPO1	ENSG00000082898.19	ENST00000677110.1:ENST00000676553.1:ENST00000677556.1:ENST00000677814.1:ENST00000676771.1:ENST00000677803.1:ENST00000677239.1:ENST00000678790.1:ENST00000677928.1:ENST00000678182.1:ENST00000677150.1:ENST00000678172.1:ENST00000678360.1:ENST00000678081.1:ENST00000676889.1:ENST00000676783.1:ENST00000679035.1:ENST00000677422.1:ENST00000677417.1:ENST00000677813.1:ENST00000676999.1:ENST00000676667.1:ENST00000678263.1:ENST00000678877.1:ENST00000677933.1:ENST00000680228.1:ENST00000677289.1:ENST00000677190.1:ENST00000401558.7:ENST00000428210.5:ENST00000677290.1:ENST00000677850.1:ENST00000451765.6:ENST00000676789.1:ENST00000678741.1:ENST00000404992.6:ENST00000406957.5:ENST00000443240.5:ENST00000476585.5:ENST00000468259.1:ENST00000420673.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	80	2	2.73564	2.905825	3.07601	0.00333144	5.95211e-4	0.0512081	0.0221865
chr3	37280762	37280862	1396131	0	+	0.33	(0.32,0.35]	chr3	146333	43	INTRON	INTRON	GOLGA4	ENSG00000144674.17	ENST00000435830.6:ENST00000444882.5:ENST00000356847.8:ENST00000450863.6:ENST00000361924.7:ENST00000429018.5:ENST00000431105.1:ENST00000419177.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	149	2	1.52865	2.90581	4.28297	0.013837	5.01053e-5	0.10247	0.00612655
chr10	86483343	86483443	4658978	0	-	0.48	(0.476,0.515]	chr10	429282	90	INTRON	INTRON	WAPL	ENSG00000062650.20	ENST00000298767.10	protein_coding	protein_coding	protein_coding	protein_coding	4	80	2	2.80651	2.9057899999999997	3.00507	0.00250121	8.38796e-4	0.0446195	0.0263691
chr20	62326046	62326124	7361245	0	-	0.5	(0.476,0.515]	chr20	750912	1	SS5_PROX	SS5_PROX:INTRON	LAMA5	ENSG00000130702.15	ENST00000252999.7:ENST00000497363.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	60	2	2.31726	2.905685	3.49411	0.015077	9.23453e-4	0.0994339	0.0278392
chr2	241310908	241311007	1348522	0	-	0.454545	(0.44,0.476]	chr2	141652	83	INTRON	INTRON	HDLBP	ENSG00000115677.18	ENST00000310931.10:ENST00000391976.6:ENST00000428482.5:ENST00000441124.5:ENST00000413241.5:ENST00000423693.5:ENST00000425989.5:ENST00000420451.5:ENST00000417540.5:ENST00000462130.1:ENST00000496569.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	116	2	2.79565	2.90557	3.01549	7.94781e-4	1.79714e-4	0.0260201	0.0116696
chr1	1751722	1751821	361447	0	-	0.545455	(0.515,0.57]	chr1	42148	6	UTR3	UTR3:EXON_MRNA	NADK	ENSG00000008130.15	ENST00000378625.5:ENST00000341991.7:ENST00000341426.9	protein_coding	protein_coding	protein_coding	protein_coding	4	69	2	2.763	2.90549	3.04798	0.00257143	5.9198e-4	0.045134	0.0221485
chr11	34055306	34055401	4767684	0	+	0.547368	(0.515,0.57]	chr11	440943	13	INTRON	INTRON	CAPRIN1	ENSG00000135387.21	ENST00000341394.9:ENST00000528856.5:ENST00000389645.7:ENST00000534042.5:ENST00000534825.5:ENST00000532820.5:ENST00000530820.5:ENST00000529307.1:ENST00000526494.5:ENST00000532755.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	206	2	2.73469	2.90548	3.07627	3.08915e-5	8.60259e-6	0.00443703	0.00225139
chr1	8477499	8477598	370364	0	-	0.414141	(0.408,0.44]	chr1	43466	111	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000377464.5:ENST00000400907.6:ENST00000656437.1:ENST00000464972.5:ENST00000659924.1:ENST00000480342.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	63	2	1.94273	2.905405	3.86808	0.0456237	1.49394e-4	0.149888	0.0106137
chr1	11804161	11804254	378931	0	-	0.494624	(0.476,0.515]	chr1	44489	8	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	MTHFR	ENSG00000177000.13	ENST00000376590.9:ENST00000376592.6:ENST00000376585.6:ENST00000641747.1:ENST00000641446.1:ENST00000376486.3:ENST00000641437.1:ENST00000418034.1:ENST00000431243.6:ENST00000642002.1:ENST00000413656.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	141	2	2.51081	2.9053950000000004	3.29998	4.08403e-4	1.88247e-4	0.0185763	0.011951
chr1	77617850	77617950	492809	0	-	0.47	(0.44,0.476]	chr1	58292	328	INTRON	INTRON	ZZZ3	ENSG00000036549.13	ENST00000370801.8:ENST00000481346.5:ENST00000476275.5:ENST00000370798.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	45	2	2.60774	2.90532	3.2029	0.0255874	0.00308681	0.120269	0.0510391
chr19	1037366	1037457	6993280	0	+	0.538462	(0.515,0.57]	chr19	692532	5	EXON_MRNA	EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CNN2	ENSG00000064666.15	ENST00000263097.9:ENST00000348419.7:ENST00000565096.6:ENST00000562958.6:ENST00000569352.6:ENST00000568865.3:ENST00000566695.5:ENST00000564572.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	54	2	2.1885	2.9050700000000003	3.62164	0.0202537	5.41944e-4	0.121364	0.0215026
chr1	92283201	92283301	505214	0	-	0.43	(0.408,0.44]	chr1	59733	112	INTRON	INTRON	GLMN	ENSG00000174842.17	ENST00000370360.8:ENST00000495106.5:ENST00000463560.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	92	2	2.14702	2.9050599999999998	3.6631	0.0030836	6.21419e-4	0.0510391	0.0229151
chr19	11928072	11928172	7019783	0	+	0.49	(0.476,0.515]	chr19	697884	24	INTRON	INTRON	ZNF700	ENSG00000196757.8	ENST00000622593.4:ENST00000254321.10	protein_coding	protein_coding	protein_coding	protein_coding	7	106	2	2.10459	2.9050599999999998	3.70553	0.00302726	3.44823e-4	0.0493883	0.0165103
chr18	36831306	36831403	6892851	0	+	0.360825	(0.35,0.378]	chr18	683191	15	INTRON	INTRON	KIAA1328	ENSG00000150477.15	ENST00000592611.5:ENST00000280020.10:ENST00000592521.5:ENST00000590617.5:ENST00000587139.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	89	2	2.48623	2.905045	3.32386	0.00938784	1.8439e-4	0.0817766	0.0118315
chr6	4022065	4022165	2789705	0	+	0.38	(0.378,0.408]	chr6	263481	2	INTRON	INTRON	PRPF4B	ENSG00000112739.17	ENST00000480058.5:ENST00000337659.11	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	77	2	2.33619	2.90498	3.47377	0.00607113	0.00103087	0.0676501	0.0294094
chr22	49645831	49645931	7602546	0	-	0.56	(0.515,0.57]	chr22	778594	184	INTRON	INTRON	MIR3667HG	ENSG00000188511.13	ENST00000414287.5:ENST00000416411.1:ENST00000689875.1:ENST00000400023.5:ENST00000405854.5	lncRNA	lncRNA	lncRNA	lncRNA	4	62	2	2.27116	2.9048	3.53844	0.00601759	7.92613e-4	0.0700813	0.0259663
chr7	129627382	129627482	3412278	0	+	0.43	(0.408,0.44]	chr7	319009	152	INTRON	INTRON	NRF1	ENSG00000106459.15	ENST00000393232.6:ENST00000477428.5:ENST00000454688.5:ENST00000223190.8:ENST00000311967.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	84	2	1.97721	2.90469	3.83217	0.0121661	1.79883e-4	0.0910127	0.0116696
chr2	71120354	71120453	1154542	0	-	0.484848	(0.476,0.515]	chr2	123385	21	INTRON	INTRON	MCEE	ENSG00000124370.11	ENST00000413592.5:ENST00000244217.6	protein_coding	protein_coding	protein_coding	protein_coding	3	60	2	2.81076	2.90464	2.99852	0.0077575	0.00203568	0.0757402	0.0417667
chr1	30968992	30969091	411915	0	-	0.535354	(0.515,0.57]	chr1	49679	1	INTRON	INTRON	PUM1	ENSG00000134644.16	ENST00000426105.7:ENST00000373747.7:ENST00000257075.9:ENST00000424085.6:ENST00000525843.5:ENST00000440538.6:ENST00000498419.5:ENST00000373741.8:ENST00000373742.6:ENST00000471894.1:ENST00000490546.1:ENST00000532678.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	52	2	2.32967	2.90463	3.47959	0.0133671	8.38022e-4	0.0946278	0.0263691
chr5	139327666	139327764	2499738	0	+	0.479592	(0.476,0.515]	chr5	238978	10	INTRON	INTRON	MATR3	ENSG00000280987.4:ENSG00000015479.20	ENST00000509990.5:ENST00000361059.7:ENST00000394800.6:ENST00000502929.5:ENST00000504203.5:ENST00000502499.5:ENST00000510056.5:ENST00000394805.8:ENST00000503811.5:ENST00000618441.5:ENST00000505625.5:ENST00000502422.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	48	2	1.27903	2.90463	4.53023	0.0608608	0.0119748	0.19287	0.0899583
chr19	49089890	49089990	7088417	0	+	0.52	(0.515,0.57]	chr19	709535	2	SS3_PROX	SS3_PROX:INTRON	SNRNP70	ENSG00000104852.15	ENST00000601065.5:ENST00000598984.5:ENST00000598441.6:ENST00000401730.5:ENST00000221448.9:ENST00000597936.5:ENST00000595231.5:ENST00000601411.1:ENST00000599687.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	52	2	2.43783	2.90454	3.37125	0.00916404	0.00136343	0.0812949	0.0339121
chr12	124780184	124780284	5445728	0	-	0.52	(0.515,0.57]	chr12	521214	12	INTRON	INTRON	SCARB1	ENSG00000073060.17	ENST00000339570.9:ENST00000261693.11:ENST00000679605.1:ENST00000681686.1:ENST00000680926.1:ENST00000680556.1:ENST00000680982.1:ENST00000680596.1:ENST00000681555.1:ENST00000681788.1:ENST00000415380.6:ENST00000681117.1:ENST00000681499.1:ENST00000545305.1:ENST00000538291.5:ENST00000546215.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	13	193	2	1.98846	2.904465	3.82047	0.00179052	1.23413e-7	0.0380316	1.59064e-4
chr22	49573958	49574058	7601819	0	-	0.49	(0.476,0.515]	chr22	778566	1324	INTRON	INTRON	MIR3667HG	ENSG00000188511.13	ENST00000414287.5:ENST00000416411.1	lncRNA	lncRNA	lncRNA	lncRNA	3	60	2	2.43242	2.90437	3.37632	0.0091895	0.00195267	0.0855292	0.0400465
chr7	65069201	65069300	3321692	0	+	0.484848	(0.476,0.515]	chr7	308837	6	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CCT6P3	ENSG00000234585.6	ENST00000419314.5:ENST00000426828.5:ENST00000452026.1	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript:transcribed_unprocessed_pseudogene	5	83	2	2.43223	2.904275	3.37632	0.00195267	0.00145905	0.0400465	0.0349875
chr19	28520616	28520716	7166301	0	-	0.4	(0.378,0.408]	chr19	724189	524	INTRON	INTRON	ENSG00000283403:ENSG00000267243	ENSG00000283403.1:ENSG00000267243.6	ENST00000592347.5:ENST00000593065.5	lncRNA	lncRNA	lncRNA	lncRNA	7	131	2	2.41673	2.904245	3.39176	0.00122932	1.17224e-4	0.0321361	0.00929802
chr10	35370154	35370254	4424839	0	+	0.54	(0.515,0.57]	chr10	407899	326	INTRON	INTRON	CCNY	ENSG00000108100.18	ENST00000374706.5:ENST00000490012.6:ENST00000493157.6:ENST00000374704.8:ENST00000265375.13:ENST00000339497.7:ENST00000492478.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	95	2	2.14688	2.9041949999999996	3.66151	0.00116191	4.49566e-4	0.0314379	0.0196044
chr20	35722377	35722476	7336347	0	-	0.222222	[0,0.28]	chr20	747452	1	INTRON	INTRON	RBM39	ENSG00000131051.24	ENST00000253363.11:ENST00000639702.1:ENST00000656873.1:ENST00000463004.5:ENST00000361162.10:ENST00000461283.5:ENST00000403542.6:ENST00000338163.10:ENST00000528062.7:ENST00000429968.5:ENST00000444878.5:ENST00000665058.1:ENST00000492779.5:ENST00000448303.5:ENST00000490484.7:ENST00000494274.5:ENST00000374038.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	64	2	2.54624	2.90417	3.2621000000000002	0.0388449	0.00367113	0.143072	0.056059199999999997
chr6	132770700	132770789	3222532	0	-	0.393258	(0.378,0.408]	chr6	299578	4	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SLC18B1	ENSG00000146409.12	ENST00000275227.9:ENST00000647932.1:ENST00000650278.1:ENST00000650136.1:ENST00000650298.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	64	2	2.78946	2.90416	3.01886	0.0158859	7.99379e-4	0.101453	0.0258804
chr6	147204982	147205082	2988713	0	+	0.34	(0.32,0.35]	chr6	279994	3	SS5_PROX	SS5_PROX:INTRON	STXBP5	ENSG00000164506.15	ENST00000321680.11:ENST00000367481.7:ENST00000546097.5:ENST00000367480.7	protein_coding	protein_coding	protein_coding	protein_coding	3	75	2	2.84076	2.90411	2.96746	0.00815799	0.0027933	0.0810802	0.0469265
chr10	94604110	94604210	4500226	0	+	0.4	(0.378,0.408]	chr10	414337	21	INTRON	INTRON	ENSG00000244332:HELLS	ENSG00000244332.1:ENSG00000119969.15	ENST00000432120.1:ENST00000371327.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	6	122	2	2.87389	2.903975	2.93406	4.52418e-4	4.01435e-4	0.019684	0.0179994
chr7	23456180	23456280	3503524	0	-	0.38	(0.378,0.408]	chr7	326910	250	INTRON	INTRON	IGF2BP3	ENSG00000136231.14	ENST00000258729.8:ENST00000421467.6:ENST00000468263.5:ENST00000491719.5:ENST00000476938.5:ENST00000468005.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	86	2	2.40903	2.903875	3.39872	0.0019852	0.00165739	0.0404516	0.0376447
chr1	207047825	207047925	624915	0	-	0.26	[0,0.28]	chr1	74431	41	UTR3	UTR3:EXON_MRNA	YOD1	ENSG00000180667.11	ENST00000367084.1:ENST00000315927.9	protein_coding	protein_coding	protein_coding	protein_coding	12	252	2	1.9015	2.903855	3.90621	0.00363149	4.80352e-5	0.0555281	0.00600325
chr14	30996867	30996967	5857578	0	-	0.28	[0,0.28]	chr14	556508	325	INTRON	INTRON	STRN3	ENSG00000196792.12	ENST00000355683.9:ENST00000357479.10:ENST00000555358.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	86	2	2.75887	2.9037699999999997	3.04867	0.0104221	0.00360252	0.085482	0.0552588
chr14	21452554	21452654	5836266	0	-	0.53	(0.515,0.57]	chr14	554763	154	INTRON	INTRON	CHD8	ENSG00000100888.15	ENST00000646647.2:ENST00000645929.1:ENST00000556833.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	40	2	2.43589	2.90357	3.37125	0.0370871	0.00136343	0.139194	0.0339121
chr17	27111910	27112010	6579944	0	+	0.35	(0.32,0.35]	chr17	639586	151	INTRON	INTRON	ENSG00000285822	ENSG00000285822.1	ENST00000649401.1	lncRNA	lncRNA	lncRNA	lncRNA	6	129	2	2.5774	2.903365	3.22933	8.38017e-4	5.51504e-4	0.0263691	0.0216014
chr1	227043332	227043431	648941	0	-	0.484848	(0.476,0.515]	chr1	76966	27	INTRON	INTRON	CDC42BPA	ENSG00000143776.20	ENST00000366766.8:ENST00000366769.7:ENST00000334218.9:ENST00000366767.7:ENST00000448940.5:ENST00000442054.5:ENST00000366764.8:ENST00000441725.1	protein_coding	protein_coding	protein_coding	protein_coding	5	82	2	2.03337	2.9033550000000004	3.77334	0.00851546	3.52709e-4	0.0833995	0.0174637
chr22	45333010	45333110	7530380	0	+	0.5	(0.476,0.515]	chr22	769980	3	SS5_PROX	SS5_PROX:INTRON	FAM118A	ENSG00000100376.12	ENST00000216214.7:ENST00000441876.7:ENST00000487732.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	45	2	2.56033	2.903315	3.2463	0.0287634	0.00262374	0.127066	0.0470772
chr2	233442591	233442688	1040725	0	+	0.453608	(0.44,0.476]	chr2	111047	1	INTRON	INTRON	DGKD	ENSG00000077044.11	ENST00000264057.7:ENST00000409813.7:ENST00000490764.5:ENST00000430834.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	64	2	2.848	2.9032999999999998	2.9586	0.00758318	0.00215274	0.0773151	0.0417866
chr11	130140858	130140949	4886446	0	+	0.307692	(0.28,0.32]	chr11	457017	5	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	APLP2	ENSG00000084234.18	ENST00000650012.1:ENST00000533616.5:ENST00000338167.10:ENST00000528499.5:ENST00000263574.9:ENST00000345598.9:ENST00000278756.7:ENST00000533860.5:ENST00000530493.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	56	2	2.67975	2.903275	3.1268	0.0252505	0.00508956	0.12011	0.0646039
chr7	17910435	17910535	3496266	0	-	0.37	(0.35,0.378]	chr7	326520	27	INTRON	INTRON	SNX13	ENSG00000071189.21	ENST00000428135.7:ENST00000611725.4:ENST00000409076.6:ENST00000444712.5:ENST00000482558.5:ENST00000409604.1:ENST00000475800.5:ENST00000474067.5:ENST00000471744.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	49	2	2.53856	2.90325	3.26794	0.0326077	0.00257067	0.133687	0.0466761
chr1	3827624	3827719	364208	0	-	0.410526	(0.408,0.44]	chr1	42679	5	INTRON	INTRON	CEP104	ENSG00000116198.14	ENST00000674558.1:ENST00000676052.1:ENST00000378230.8:ENST00000674623.1:ENST00000675200.1:ENST00000674985.1:ENST00000674879.1:ENST00000675677.1:ENST00000675750.1:ENST00000676009.1:ENST00000675108.1:ENST00000675666.1:ENST00000675966.1:ENST00000675375.1:ENST00000674544.1:ENST00000675334.1:ENST00000428079.6:ENST00000438539.6:ENST00000461667.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	45	2	2.71911	2.903245	3.08738	0.0189489	0.00478231	0.108861	0.0636201
chr15	30641617	30641717	5992430	0	+	0.41	(0.408,0.44]	chr15	569737	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ENSG00000284906:ARHGAP11B	ENSG00000284906.3:ENSG00000285077.3	ENST00000564902.5:ENST00000428041.4:ENST00000693711.1:ENST00000685924.1:ENST00000563110.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	45	2	2.71911	2.903245	3.08738	0.0189489	0.00478231	0.108861	0.0636201
chr5	71657442	71657540	2385561	0	+	0.581633	(0.57,1]	chr5	230208	7	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	MCCC2	ENSG00000131844.17	ENST00000682499.1:ENST00000682214.1:ENST00000682045.1:ENST00000683789.1:ENST00000681968.1:ENST00000682541.1:ENST00000682727.1:ENST00000683098.1:ENST00000683258.1:ENST00000684254.1:ENST00000683882.1:ENST00000684024.1:ENST00000683403.1:ENST00000682687.1:ENST00000682876.1:ENST00000683429.1:ENST00000340941.11:ENST00000683339.1:ENST00000683847.1:ENST00000684530.1:ENST00000681991.1:ENST00000682667.1:ENST00000684686.1:ENST00000684474.1:ENST00000682231.1:ENST00000682640.1:ENST00000682438.1:ENST00000684132.1:ENST00000684473.1:ENST00000682175.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	48	2	2.28103	2.9032400000000003	3.52545	0.0151554	2.80799e-5	0.108535	0.00435887
chr17	30747741	30747840	6589965	0	+	0.575758	(0.57,1]	chr17	640860	40	INTRON	INTRON	SUZ12P1	ENSG00000264538.7	ENST00000578070.5:ENST00000579526.5:ENST00000690405.1:ENST00000497969.6:ENST00000578195.6:ENST00000582557.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	7	70	2	2.55134	2.903235	3.25513	6.11018e-4	2.35468e-5	0.0223951	0.00396325
chr13	95137497	95137597	5638215	0	-	0.31	(0.28,0.32]	chr13	537056	211	INTRON	INTRON	ABCC4	ENSG00000125257.16	ENST00000645237.2:ENST00000643051.1:ENST00000643842.1:ENST00000646439.1:ENST00000644880.1:ENST00000643816.1:ENST00000536256.3:ENST00000643556.1:ENST00000629385.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	56	2	2.78004	2.90318	3.02632	0.0193244	0.0071944	0.108861	0.0756118
chr1	52434778	52434876	457347	0	-	0.418367	(0.408,0.44]	chr1	54946	35	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	TUT4	ENSG00000134744.14	ENST00000371544.7:ENST00000257177.9:ENST00000531722.5:ENST00000474453.6:ENST00000470212.1:ENST00000469810.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	45	2	2.78122	2.903175	3.02513	0.015812	0.0059965	0.101453	0.0700606
chr17	21036939	21037039	6743108	0	-	0.42	(0.408,0.44]	chr17	662067	79	INTRON	INTRON	USP22	ENSG00000124422.12	ENST00000261497.9:ENST00000537526.6:ENST00000455117.6:ENST00000579645.5:ENST00000476111.5:ENST00000584538.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	45	2	2.78122	2.903175	3.02513	0.015812	0.0059965	0.101453	0.0700606
chr22	20090558	20090658	7478336	0	+	0.42	(0.408,0.44]	chr22	762717	3	SS5_PROX	SS5_PROX:INTRON	DGCR8	ENSG00000128191.16	ENST00000383024.6:ENST00000351989.8:ENST00000495826.5:ENST00000407755.1:ENST00000498171.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	45	2	2.78122	2.903175	3.02513	0.015812	0.0059965	0.101453	0.0700606
chr10	68422793	68422890	4639263	0	-	0.329897	(0.32,0.35]	chr10	426657	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	DNA2	ENSG00000138346.15	ENST00000358410.8:ENST00000551118.6:ENST00000399179.6:ENST00000399180.3:ENST00000440722.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	97	2	2.71053	2.903055	3.09558	0.00346747	9.89544e-4	0.0539802	0.0287967
chr5	66148774	66148873	2372532	0	+	0.40404	(0.378,0.408]	chr5	228649	32	INTRON	INTRON	SREK1	ENSG00000153914.16	ENST00000521691.5:ENST00000612404.4:ENST00000523851.1:ENST00000334121.11:ENST00000520058.1:ENST00000520953.5:ENST00000522912.5:ENST00000524111.5:ENST00000380918.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	115	2	2.76717	2.903025	3.03888	0.00102794	2.59679e-4	0.029231300000000002	0.014326
chr16	1413148	1413246	6427968	0	-	0.540816	(0.515,0.57]	chr16	617882	60	INTRON	INTRON	UNKL	ENSG00000059145.19	ENST00000389221.9:ENST00000508903.7:ENST00000382757.9:ENST00000301712.5:ENST00000503648.1:ENST00000566707.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	30	2	1.60221	2.90301	4.20381	0.0581855	0.0189208	0.188704	0.108861
chr8	102377409	102377509	4012403	0	-	0.55	(0.515,0.57]	chr8	367237	154	INTRON	INTRON	UBR5	ENSG00000104517.13	ENST00000520539.6:ENST00000220959.8:ENST00000521922.5	protein_coding	protein_coding	protein_coding	protein_coding	3	30	2	1.60221	2.90301	4.20381	0.0581855	0.0189208	0.188704	0.108861
chr7	128955978	128956071	3635570	0	-	0.344086	(0.32,0.35]	chr7	338015	2	INTRON	INTRON	TNPO3	ENSG00000064419.14	ENST00000627585.2:ENST00000265388.10:ENST00000471234.5:ENST00000482320.5	protein_coding	protein_coding	protein_coding	protein_coding	3	70	2	2.30731	2.903	3.49869	0.0176772	0.00108004	0.10525	0.0300133
chr1	40394004	40394103	81647	0	+	0.323232	(0.32,0.35]	chr1	10558	1	INTRON	INTRON	SMAP2	ENSG00000084070.12	ENST00000435168.6:ENST00000372718.8:ENST00000372708.5:ENST00000614549.4	protein_coding	protein_coding	protein_coding	protein_coding	2	52	2	2.57263	2.90297	3.23331	0.0312297	0.00315414	0.13151	0.0515261
chr9	120835651	120835751	4335683	0	-	0.46	(0.44,0.476]	chr9	398321	18	INTRON	INTRON	PSMD5	ENSG00000095261.14	ENST00000210313.8:ENST00000373904.5:ENST00000476949.1:ENST00000471789.1:ENST00000625444.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	101	2	1.68026	2.90294	4.12562	0.0174736	3.66727e-5	0.10482	0.00484751
chr7	157193531	157193630	3454498	0	+	0.30303	(0.28,0.32]	chr7	322959	8	INTRON	INTRON	UBE3C	ENSG00000009335.18	ENST00000348165.10	protein_coding	protein_coding	protein_coding	protein_coding	2	60	2	2.18975	2.902875	3.616	0.0776042	7.42427e-4	0.196285	0.024913
chr17	63814692	63814785	6661394	0	+	0.526882	(0.515,0.57]	chr17	650031	9	INTRON	INTRON	DDX42	ENSG00000198231.14	ENST00000578681.5:ENST00000583590.5:ENST00000389924.7:ENST00000359353.9:ENST00000584010.5:ENST00000578593.1:ENST00000584951.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	40	2	2.65834	2.90282	3.1473	0.0187418	0.00397184	0.117523	0.0549214
chr6	150212044	150212144	2997466	0	+	0.53	(0.515,0.57]	chr6	280443	682	INTRON	INTRON	PPP1R14C	ENSG00000198729.5	ENST00000361131.5	protein_coding	protein_coding	protein_coding	protein_coding	2	40	2	2.65834	2.90282	3.1473	0.0187418	0.00397184	0.117523	0.0549214
chr7	99007586	99007682	3360626	0	+	0.520833	(0.515,0.57]	chr7	313726	19	INTRON	INTRON	TRRAP	ENSG00000196367.14	ENST00000355540.7:ENST00000359863.8:ENST00000628380.2:ENST00000456197.2:ENST00000446306.7:ENST00000360902.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	40	2	2.65834	2.90282	3.1473	0.0187418	0.00397184	0.117523	0.0549214
chr2	48325769	48325869	777430	0	+	0.37	(0.35,0.378]	chr2	87463	106	INTRON	INTRON	FOXN2	ENSG00000170802.17	ENST00000413569.5:ENST00000340553.8	protein_coding	protein_coding	protein_coding	protein_coding	2	49	2	2.86451	2.90281	2.94111	0.0109111	0.0104563	0.0923273	0.0855102
chr22	20529147	20529247	7479566	0	+	0.37	(0.35,0.378]	chr22	762964	44	INTRON	INTRON	MED15	ENSG00000099917.17	ENST00000445987.5:ENST00000444094.5:ENST00000414658.5:ENST00000486656.5:ENST00000433831.5:ENST00000432052.5:ENST00000292733.11:ENST00000263205.11:ENST00000477824.5:ENST00000406969.5:ENST00000382974.6:ENST00000441501.5:ENST00000438962.1:ENST00000445189.5:ENST00000451058.5:ENST00000473028.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	49	2	2.86451	2.90281	2.94111	0.0109111	0.0104563	0.0923273	0.0855102
chr1	51401368	51401453	453156	0	-	0.4	(0.378,0.408]	chr1	54334	3	SS3_PROX	SS3_PROX:INTRON	EPS15	ENSG00000085832.17	ENST00000371733.8:ENST00000371730.6:ENST00000486505.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	62	2	2.61188	2.90278	3.19368	0.0047055	0.00426861	0.0631419	0.0573912
chr10	26809238	26809338	4583982	0	-	0.39	(0.378,0.408]	chr10	422397	316	INTRON	INTRON	ABI1	ENSG00000136754.18	ENST00000376138.7:ENST00000376166.5:ENST00000376160.5:ENST00000376139.6:ENST00000376142.6:ENST00000359188.8:ENST00000376170.8:ENST00000536334.5:ENST00000490841.6:ENST00000376137.8:ENST00000376140.4:ENST00000346832.10:ENST00000473481.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	28	2	1.81685	2.90276	3.98867	0.0597868	0.0507	0.189982	0.156383
chr12	62487869	62487967	5151372	0	+	0.397959	(0.378,0.408]	chr12	487464	33	INTRON	INTRON	MON2	ENSG00000061987.16	ENST00000641654.1:ENST00000546600.5:ENST00000393630.8:ENST00000549378.5:ENST00000547095.5:ENST00000552738.5:ENST00000393629.6:ENST00000552115.5:ENST00000549286.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	28	2	1.81685	2.90276	3.98867	0.0597868	0.0507	0.189982	0.156383
chr13	98002283	98002374	5521001	0	+	0.384615	(0.378,0.408]	chr13	527901	8	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	IPO5	ENSG00000065150.21	ENST00000651721.2:ENST00000261574.10:ENST00000357602.7:ENST00000490680.5:ENST00000469360.5:ENST00000491555.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	28	2	1.81685	2.90276	3.98867	0.0597868	0.0507	0.189982	0.156383
chr13	113474023	113474123	5652662	0	-	0.38	(0.378,0.408]	chr13	538700	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	DCUN1D2	ENSG00000150401.15	ENST00000478244.6:ENST00000332592.7:ENST00000375403.6:ENST00000438545.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	28	2	1.81685	2.90276	3.98867	0.0597868	0.0507	0.189982	0.156383
chr14	73889751	73889849	5786675	0	+	0.387755	(0.378,0.408]	chr14	548170	10	INTRON	INTRON	ZNF410	ENSG00000119725.21	ENST00000540593.5:ENST00000555730.6:ENST00000324593.10:ENST00000556396.5:ENST00000555044.6:ENST00000412490.7:ENST00000555602.6:ENST00000556659.5:ENST00000557495.5:ENST00000541357.6:ENST00000398139.7:ENST00000442160.7:ENST00000556160.5:ENST00000554582.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	28	2	1.81685	2.90276	3.98867	0.0597868	0.0507	0.189982	0.156383
chr2	97234870	97234970	832113	0	+	0.28	[0,0.28]	chr2	93233	6	INTRON	INTRON	ANKRD36	ENSG00000135976.21	ENST00000420699.9:ENST00000652721.1:ENST00000461153.7:ENST00000421946.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	88	2	2.54342	2.90276	3.2621000000000002	0.0105954	0.00367113	0.0861859	0.056059199999999997
chr6	7177667	7177765	2799065	0	+	0.408163	(0.378,0.408]	chr6	263739	5	INTRON	INTRON	RREB1	ENSG00000124782.21	ENST00000379933.7:ENST00000491191.5:ENST00000471433.5:ENST00000379938.7:ENST00000467782.5:ENST00000349384.10:ENST00000334984.10:ENST00000475946.5:ENST00000483150.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	28	2	1.81685	2.90276	3.98867	0.0597868	0.0507	0.189982	0.156383
chr6	47560533	47560633	2874398	0	+	0.38	(0.378,0.408]	chr6	272749	54	INTRON	INTRON	CD2AP	ENSG00000198087.7	ENST00000359314.5	protein_coding	protein_coding	protein_coding	protein_coding	2	28	2	1.81685	2.90276	3.98867	0.0597868	0.0507	0.189982	0.156383
chr6	63666453	63666552	2883597	0	+	0.40404	(0.378,0.408]	chr6	273559	193	INTRON	INTRON	PHF3	ENSG00000118482.12	ENST00000262043.8:ENST00000506783.5:ENST00000481385.6:ENST00000515594.5:ENST00000494284.6:ENST00000509876.5:ENST00000509330.5:ENST00000393387.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	28	2	1.81685	2.90276	3.98867	0.0597868	0.0507	0.189982	0.156383
chr8	11805587	11805685	3702550	0	+	0.367347	(0.35,0.378]	chr8	343487	17	INTRON	INTRON	FDFT1	ENSG00000079459.13	ENST00000538689.4:ENST00000615631.4:ENST00000618539.4:ENST00000530337.5:ENST00000623368.3:ENST00000446331.6:ENST00000443614.6:ENST00000220584.9:ENST00000525607.5:ENST00000525283.5:ENST00000529464.5:ENST00000525900.5:ENST00000528812.5:ENST00000622850.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	11	218	2	2.87888	2.90274	2.9266	2.08019e-4	2.00463e-5	0.0131276	0.00346618
chr1	212896184	212896283	310231	0	+	0.313131	(0.28,0.32]	chr1	35838	10	UTR3	UTR3:EXON_MRNA	FLVCR1	ENSG00000162769.13	ENST00000366971.9	protein_coding	protein_coding	protein_coding	protein_coding	3	40	2	1.6633	2.9027200000000004	4.14214	0.0579756	0.0522231	0.177274	0.167723
chr3	180925360	180925459	1568732	0	+	0.313131	(0.28,0.32]	chr3	162365	94	INTRON	INTRON	FXR1	ENSG00000114416.18	ENST00000469882.5:ENST00000484790.5:ENST00000465551.5:ENST00000305586.11:ENST00000475315.5:ENST00000491674.1:ENST00000357559.9:ENST00000468861.5:ENST00000491062.5:ENST00000479176.5:ENST00000445140.6:ENST00000472339.5:ENST00000484958.5:ENST00000480918.5:ENST00000484042.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	40	2	1.6633	2.9027200000000004	4.14214	0.0579756	0.0522231	0.177274	0.167723
chr19	21725019	21725117	7158871	0	-	0.285714	(0.28,0.32]	chr19	723701	24	UTR3	UTR3:EXON_MRNA	ZNF100	ENSG00000197020.12	ENST00000358296.11	protein_coding	protein_coding	protein_coding	protein_coding	6	142	2	2.39276	2.902655	3.41255	0.00331685	1.55656e-4	0.0512081	0.0106835
chr11	130309878	130309978	5053816	0	-	0.33	(0.32,0.35]	chr11	476969	476	INTRON	INTRON	ZBTB44	ENSG00000196323.14	ENST00000357899.9:ENST00000527478.6:ENST00000445008.6:ENST00000525842.5:ENST00000397753.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	52	2	2.89743	2.9026449999999997	2.90786	0.0127608	0.00993008	0.0926667	0.0877296
chr4	528305	528401	1907660	0	+	0.354167	(0.35,0.378]	chr4	191171	7	INTRON	INTRON	PIGG	ENSG00000174227.16	ENST00000453061.7:ENST00000310340.9:ENST00000504346.5:ENST00000383028.8:ENST00000508562.1:ENST00000503261.5:ENST00000510235.1:ENST00000511666.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	65	2	2.72093	2.9026199999999998	3.08431	0.0065853	0.00314173	0.0701901	0.0514466
chr20	17966304	17966402	7320547	0	-	0.489796	(0.476,0.515]	chr20	745337	35	INTRON	INTRON	SNX5	ENSG00000089006.17	ENST00000377768.7:ENST00000490175.5:ENST00000377759.9:ENST00000431277.5:ENST00000419004.2:ENST00000474883.5:ENST00000469704.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	96	2	2.50488	2.90243	3.29998	0.00285353	1.88247e-4	0.0474836	0.011951
chr17	82574563	82574663	6693160	0	+	0.57	(0.515,0.57]	chr17	654652	23	INTRON	INTRON	FOXK2	ENSG00000141568.21	ENST00000473637.6:ENST00000335255.10:ENST00000531030.5:ENST00000526383.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	63	2	2.3252100000000002	2.9024	3.47959	0.00525266	8.38022e-4	0.0633615	0.0263691
chr16	22416372	22416471	6463183	0	-	0.50505	(0.476,0.515]	chr16	623638	414	INTRON	INTRON	CDR2	ENSG00000140743.8	ENST00000564542.5:ENST00000563573.5:ENST00000569045.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	46	2	2.65268	2.90235	3.15202	0.0201975	0.00455841	0.121243	0.0595107
chr7	135502974	135503074	3648890	0	-	0.48	(0.476,0.515]	chr7	339187	642	INTRON	INTRON	CNOT4	ENSG00000080802.20	ENST00000541284.6:ENST00000451834.5:ENST00000423368.6:ENST00000361528.8:ENST00000428680.6:ENST00000315544.6:ENST00000491203.5:ENST00000498534.5:ENST00000465721.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	46	2	2.65268	2.90235	3.15202	0.0201975	0.00455841	0.121243	0.0595107
chr10	32344411	32344511	4591617	0	-	0.37	(0.35,0.378]	chr10	423379	381	INTRON	INTRON	EPC1	ENSG00000120616.16	ENST00000375110.6:ENST00000319778.11:ENST00000667706.1:ENST00000263062.8:ENST00000479380.2:ENST00000495790.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	71	2	2.04358	2.9022699999999997	3.76096	0.0329533	4.8203e-4	0.145171	0.0203411
chr9	124720607	124720707	4348708	0	-	0.38	(0.378,0.408]	chr9	399255	1249	INTRON	INTRON	NR6A1	ENSG00000148200.17	ENST00000487099.7:ENST00000373584.7:ENST00000416460.6:ENST00000344523.8	protein_coding	protein_coding	protein_coding	protein_coding	6	95	2	2.19294	2.90226	3.61158	0.00254418	8.34292e-4	0.0465115	0.0266389
chr1	47340611	47340711	97642	0	+	0.42	(0.408,0.44]	chr1	13138	61	INTRON	INTRON	CMPK1	ENSG00000162368.14	ENST00000371873.10:ENST00000371871.8:ENST00000471289.2:ENST00000450808.2:ENST00000371870.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	123	2	2.48237	2.9021600000000003	3.32195	5.72623e-4	2.54513e-4	0.0217398	0.0147895
chr3	4980603	4980699	1353519	0	+	0.4375	(0.408,0.44]	chr3	142333	2	SS5_PROX	SS5_PROX:INTRON	BHLHE40	ENSG00000134107.5	ENST00000256495.4:ENST00000467610.1:ENST00000460806.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	98	2	1.81572	2.902155	3.98859	0.0626779	2.7983e-6	0.175915	0.00107271
chr16	89799938	89800038	6544650	0	-	0.47	(0.44,0.476]	chr16	634578	3	SS3_PROX	SS3_PROX:INTRON	FANCA	ENSG00000187741.16	ENST00000561667.2:ENST00000389301.8:ENST00000568369.6:ENST00000564475.6:ENST00000696275.1:ENST00000696287.1:ENST00000696286.1:ENST00000696274.1:ENST00000696291.1:ENST00000696276.1:ENST00000567205.2:ENST00000567284.7:ENST00000696277.1:ENST00000696292.1:ENST00000563767.2:ENST00000567621.6:ENST00000696288.1:ENST00000696293.1:ENST00000566889.5:ENST00000389302.7:ENST00000696294.1:ENST00000696295.1:ENST00000563673.5:ENST00000543736.5:ENST00000534992.5:ENST00000565582.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	14	236	2	2.22915	2.90207	3.57499	5.48874e-4	1.36195e-6	0.0215928	6.88249e-4
chr20	2653820	2653893	7222211	0	+	0.465753	(0.44,0.476]	chr20	733828	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NOP56	ENSG00000101361.17	ENST00000651302.1:ENST00000329276.10:ENST00000494697.5:ENST00000469588.5:ENST00000445139.1:ENST00000460258.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	155	2	2.64669	2.90204	3.15739	0.0040295	1.89165e-5	0.0578376	0.00354138
chr1	153876926	153877026	557305	0	-	0.58	(0.57,1]	chr1	65983	482	INTRON	INTRON	GATAD2B	ENSG00000143614.10	ENST00000368655.5:ENST00000634544.1:ENST00000634408.1:ENST00000634401.1:ENST00000634791.1:ENST00000636014.1:ENST00000637331.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	71	2	2.29448	2.9018699999999997	3.50926	0.00237038	3.38848e-6	0.0438057	0.00120054
chrX	154045786	154045886	7912572	0	-	0.41	(0.408,0.44]	chrX	805608	55	INTRON	INTRON	MECP2	ENSG00000169057.24	ENST00000303391.11:ENST00000453960.7:ENST00000628176.2:ENST00000407218.5:ENST00000486506.5:ENST00000369957.5:ENST00000631210.1:ENST00000496908.5:ENST00000415944.3:ENST00000460227.4:ENST00000463644.5:ENST00000488293.4:ENST00000630151.2:ENST00000676382.1:ENST00000611468.2:ENST00000637533.1:ENST00000675526.1:ENST00000637791.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	123	2	2.43558	2.901765	3.36795	7.35362e-4	2.02232e-4	0.0247453	0.0129814
chr14	73062982	73063081	5784123	0	+	0.494949	(0.476,0.515]	chr14	547808	38	INTRON	INTRON	RBM25	ENSG00000119707.14	ENST00000527432.5:ENST00000531500.5:ENST00000261973.12:ENST00000532683.5:ENST00000525321.5:ENST00000526754.5:ENST00000525161.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	37	2	1.58335	2.901495	4.21964	0.0640461	0.0167715	0.177882	0.110511
chr19	58392775	58392875	7107636	0	+	0.51	(0.476,0.515]	chr19	713448	4	SS3_PROX	SS3_PROX:INTRON	RPS5	ENSG00000083845.9	ENST00000601521.5:ENST00000596314.5:ENST00000598098.5:ENST00000196551.8:ENST00000598495.5:ENST00000598807.1:ENST00000596046.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	37	2	1.58335	2.901495	4.21964	0.0640461	0.0167715	0.177882	0.110511
chr1	193139272	193139372	284785	0	+	0.53	(0.515,0.57]	chr1	32776	7	INTRON	INTRON	CDC73	ENSG00000134371.14	ENST00000649895.1:ENST00000643006.1:ENST00000367435.5:ENST00000650197.1:ENST00000643784.1:ENST00000648071.1:ENST00000635846.1:ENST00000649606.1:ENST00000647662.1:ENST00000649706.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	52	2	2.48902	2.90145	3.31388	0.00760558	0.00174704	0.0749571	0.0386026
chr15	22820973	22821071	5976429	0	+	0.520408	(0.515,0.57]	chr15	568389	1	INTRON	INTRON	NIPA1	ENSG00000170113.16	ENST00000437912.6:ENST00000561183.5:ENST00000560069.5:ENST00000337435.9:ENST00000559448.5:ENST00000557930.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	52	2	2.48902	2.90145	3.31388	0.00760558	0.00174704	0.0749571	0.0386026
chr7	158896387	158896486	3456535	0	+	0.323232	(0.32,0.35]	chr7	323179	47	INTRON	INTRON	DYNC2I1	ENSG00000126870.16	ENST00000407559.8:ENST00000444851.5:ENST00000467220.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	113	2	2.49052	2.901405	3.31229	0.00384313	2.2038e-4	0.0542786	0.0130276
chr7	152410341	152410441	3681037	0	-	0.52	(0.515,0.57]	chr7	341660	513	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000682301.1:ENST00000452749.2:ENST00000680867.1:ENST00000683800.1:ENST00000684278.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	137	2	2.29944	2.90139	3.50334	9.49246e-4	6.60157e-6	0.0281755	0.00181159
chr5	146250710	146250810	2514593	0	+	0.31	(0.28,0.32]	chr5	240194	129	INTRON	INTRON	ENSG00000275740:RBM27	ENSG00000275740.1:ENSG00000091009.8	ENST00000506502.2:ENST00000265271.7	protein_coding	protein_coding	protein_coding	protein_coding	3	77	2	2.05458	2.90132	3.74806	0.0381508	4.11943e-4	0.141764	0.0181365
chr14	73060997	73061097	5784103	0	+	0.33	(0.32,0.35]	chr14	547808	18	INTRON	INTRON	RBM25	ENSG00000119707.14	ENST00000527432.5:ENST00000531500.5:ENST00000261973.12:ENST00000532683.5:ENST00000525321.5:ENST00000526754.5:ENST00000525161.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	106	2	2.35591	2.90113	3.44635	0.0128129	2.01759e-4	0.0990564	0.0129814
chr11	87185881	87185981	4844295	0	+	0.41	(0.408,0.44]	chr11	451862	281	INTRON	INTRON	TMEM135	ENSG00000166575.17	ENST00000340353.11:ENST00000305494.6:ENST00000532959.5:ENST00000525018.5	protein_coding	protein_coding	protein_coding	protein_coding	2	46	2	2.74518	2.901115	3.05705	0.0152229	0.00658331	0.108535	0.0701901
chr16	581594	581670	6272664	0	+	0.434211	(0.408,0.44]	chr16	598694	3	SS5_PROX	SS5_PROX:INTRON	PIGQ	ENSG00000007541.17	ENST00000409527.6:ENST00000321878.10:ENST00000636657.1:ENST00000026218.9:ENST00000443147.5:ENST00000635909.1:ENST00000636005.1:ENST00000637468.1:ENST00000420990.6:ENST00000635205.1:ENST00000480424.6:ENST00000540241.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	46	2	2.74518	2.901115	3.05705	0.0152229	0.00658331	0.108535	0.0701901
chr21	15005660	15005760	7431667	0	-	0.43	(0.408,0.44]	chr21	757978	34	INTRON	INTRON	NRIP1	ENSG00000180530.11	ENST00000400202.5:ENST00000318948.7:ENST00000400199.5:ENST00000638122.1:ENST00000637963.1:ENST00000637630.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	46	2	2.74518	2.901115	3.05705	0.0152229	0.00658331	0.108535	0.0701901
chr7	105019433	105019533	3374670	0	+	0.33	(0.32,0.35]	chr7	315854	45	INTRON	INTRON	KMT2E	ENSG00000005483.22	ENST00000622386.2:ENST00000257745.9:ENST00000334884.9:ENST00000311117.8:ENST00000478990.5:ENST00000480368.5:ENST00000495267.5:ENST00000476671.5:ENST00000667857.1:ENST00000474203.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	72	2	2.74415	2.901115	3.05808	0.0198267	7.67153e-4	0.109608	0.0254532
chr16	85508186	85508286	6414912	0	+	0.53	(0.515,0.57]	chr16	615465	1489	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	3	33	2	1.63184	2.9011050000000003	4.17037	0.0545832	0.0139194	0.165292	0.10247
chr3	10045138	10045235	1362381	0	+	0.402062	(0.378,0.408]	chr3	143486	9	INTRON	INTRON	FANCD2	ENSG00000144554.13	ENST00000682647.1:ENST00000287647.7:ENST00000676013.1:ENST00000675286.1:ENST00000419585.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	29	521	2	2.56456	2.9010800000000003	3.2376	7.8786e-6	1.37062e-6	0.00201609	7.65008e-4
chr2	159765174	159765268	900021	0	+	0.446809	(0.44,0.476]	chr2	99576	1	INTRON	INTRON	MARCHF7	ENSG00000136536.15	ENST00000539065.5:ENST00000259050.8:ENST00000409175.6:ENST00000409591.5:ENST00000420397.1:ENST00000478396.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	168	2	2.62165	2.90108	3.18051	3.987e-4	2.04793e-5	0.0185763	0.00351769
chr2	64634751	64634849	1141169	0	-	0.306122	(0.28,0.32]	chr2	122127	33	UTR3	UTR3:EXON_MRNA	SERTAD2	ENSG00000179833.4	ENST00000313349.3	protein_coding	protein_coding	protein_coding	protein_coding	3	77	2	2.53648	2.900995	3.26551	0.00925866	0.0030714	0.0817766	0.0509893
chr5	79615663	79615760	2398757	0	+	0.381443	(0.378,0.408]	chr5	231681	1	INTRON	INTRON	TENT2	ENSG00000164329.14	ENST00000505571.5:ENST00000423041.6:ENST00000504233.5:ENST00000453514.6:ENST00000428308.6:ENST00000515807.5:ENST00000296783.7:ENST00000514095.5:ENST00000508620.5:ENST00000503620.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	101	2	2.6159	2.90099	3.18608	0.00194844	3.50013e-4	0.0400465	0.0166791
chr1	213121090	213121189	311404	0	+	0.444444	(0.44,0.476]	chr1	35931	33	INTRON	INTRON	RPS6KC1	ENSG00000136643.12	ENST00000615329.4:ENST00000543354.5:ENST00000614059.4:ENST00000543470.5:ENST00000366960.8:ENST00000366959.4:ENST00000490299.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	82	2	2.08453	2.9009400000000003	3.71735	0.00689	4.72844e-4	0.0750118	0.0201458
chr16	16583287	16583387	6311695	0	+	0.5	(0.476,0.515]	chr16	604098	833	INTRON	INTRON	ENSG00000260126	ENSG00000260126.2	ENST00000567465.2	lncRNA	lncRNA	lncRNA	lncRNA	2	49	2	2.38442	2.90085	3.41728	0.0417472	0.00165726	0.161736	0.0369207
chr10	125057630	125057730	4713305	0	-	0.39	(0.378,0.408]	chr10	434897	181	INTRON	INTRON	CTBP2	ENSG00000175029.17	ENST00000337195.9:ENST00000411419.6:ENST00000494626.6:ENST00000531469.5:ENST00000460976.5:ENST00000476817.1:ENST00000530884.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	115	2	2.3043	2.9008149999999997	3.49733	0.0035117	6.46714e-5	0.0525467	0.00666922
chr16	16515413	16515513	6311016	0	+	0.53	(0.515,0.57]	chr16	604098	154	INTRON	INTRON	ENSG00000260126	ENSG00000260126.2	ENST00000567465.2	lncRNA	lncRNA	lncRNA	lncRNA	14	215	2	2.69565	2.9007899999999998	3.10593	2.50623e-5	1.90816e-5	0.00392664	0.00354138
chr5	44813193	44813282	2352040	0	+	0.393258	(0.378,0.408]	chr5	226941	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	MRPS30	ENSG00000112996.11	ENST00000507110.6:ENST00000515647.1:ENST00000508129.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	85	2	2.22335	2.90078	3.57821	0.00388279	9.60401e-4	0.0567196	0.0282401
chr17	61836836	61836936	6808667	0	-	0.38	(0.378,0.408]	chr17	672605	277	INTRON	INTRON	BRIP1	ENSG00000136492.10	ENST00000259008.7:ENST00000682755.1:ENST00000682453.1:ENST00000683039.1:ENST00000682989.1:ENST00000682589.1:ENST00000683235.1:ENST00000682477.1:ENST00000684584.1:ENST00000577598.5:ENST00000682066.1:ENST00000584322.2:ENST00000683381.1:ENST00000579028.2:ENST00000682611.1:ENST00000683692.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	62	2	2.74646	2.90074	3.05502	0.00689519	0.00271684	0.0717484	0.0481064
chr17	81713161	81713261	6691312	0	+	0.41	(0.408,0.44]	chr17	654184	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	SLC25A10	ENSG00000183048.12	ENST00000545862.5:ENST00000574129.5:ENST00000350690.10:ENST00000331531.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	73	2	2.1226	2.90073	3.67886	0.012812	3.86173e-4	0.0926667	0.017761
chr15	80065113	80065212	6071087	0	+	0.333333	(0.32,0.35]	chr15	578304	40	INTRON	INTRON	ZFAND6	ENSG00000086666.19	ENST00000613266.4:ENST00000561060.5:ENST00000559157.5:ENST00000261749.11:ENST00000561012.5:ENST00000564367.5:ENST00000558494.5:ENST00000618205.4:ENST00000560470.5	protein_coding	protein_coding	protein_coding	protein_coding	3	70	2	2.38582	2.90068	3.41554	0.0138529	0.00153152	0.0953077	0.0361484
chr13	111282248	111282345	5546005	0	+	0.43299	(0.408,0.44]	chr13	529867	12	INTRON	INTRON	ARHGEF7	ENSG00000102606.19	ENST00000317133.9:ENST00000375739.6:ENST00000375741.6:ENST00000646102.2:ENST00000469877.5:ENST00000466143.5:ENST00000218789.9:ENST00000375736.8:ENST00000426073.6:ENST00000375723.5:ENST00000478679.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	45	2	2.6542	2.90063	3.14706	0.0227514	0.00382411	0.117618	0.0562562
chr19	45861399	45861499	7193847	0	-	0.42	(0.408,0.44]	chr19	728659	1	SS5_PROX	SS5_PROX:INTRON	SYMPK	ENSG00000125755.19	ENST00000245934.12:ENST00000593504.5:ENST00000599460.5:ENST00000598896.5:ENST00000602061.5:ENST00000598059.5:ENST00000594293.5:ENST00000593959.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	45	2	2.6542	2.90063	3.14706	0.0227514	0.00382411	0.117618	0.0562562
chr16	68086116	68086216	6370227	0	+	0.39	(0.378,0.408]	chr16	612177	2	SS5_PROX	SS5_PROX:INTRON	ENSG00000261864:NFATC3	ENSG00000261864.1:ENSG00000072736.19	ENST00000548144.1:ENST00000563319.5:ENST00000569766.5:ENST00000553077.5:ENST00000566301.5:ENST00000549350.5:ENST00000566893.5:ENST00000575270.5:ENST00000561714.5:ENST00000346183.8:ENST00000568466.6:ENST00000539828.6:ENST00000562171.1:ENST00000349223.9:ENST00000329524.8:ENST00000379165.8:ENST00000562926.5:ENST00000570212.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA:processed_transcript	3	62	2	2.56408	2.90058	3.23708	0.00566993	0.00365053	0.0678837	0.0535094
chr10	123156682	123156773	4533179	0	+	0.296703	(0.28,0.32]	chr10	418417	6	INTRON	INTRON	BUB3	ENSG00000154473.18	ENST00000368865.9:ENST00000368859.6:ENST00000368858.9:ENST00000407911.2	protein_coding	protein_coding	protein_coding	protein_coding	2	56	2	2.82769	2.9005099999999997	2.97333	0.0169391	0.00857834	0.103888	0.083729
chr1	10520128	10520228	23430	0	+	0.44	(0.408,0.44]	chr1	2509	26	INTRON	INTRON	PEX14	ENSG00000142655.13	ENST00000472851.1:ENST00000356607.9:ENST00000491661.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	60	2	2.69457	2.90049	3.10641	0.00555646	0.00331036	0.0648867	0.0527031
chr17	82270387	82270485	6852804	0	-	0.438776	(0.408,0.44]	chr17	679167	30	INTRON	INTRON	CSNK1D	ENSG00000141551.15	ENST00000398519.9:ENST00000314028.11:ENST00000581241.5:ENST00000392334.6:ENST00000403276.7:ENST00000582844.5:ENST00000580446.1:ENST00000581660.5:ENST00000578194.5:ENST00000579316.5:ENST00000584472.5:ENST00000585026.1:ENST00000579308.1:ENST00000581655.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	60	2	2.69457	2.90049	3.10641	0.00555646	0.00331036	0.0648867	0.0527031
chr5	140477586	140477686	2503599	0	+	0.41	(0.408,0.44]	chr5	239224	49	INTRON	INTRON	ANKHD1	ENSG00000131503.21	ENST00000297183.10:ENST00000360839.7:ENST00000421134.5:ENST00000246149.10	protein_coding	protein_coding	protein_coding	protein_coding	3	60	2	2.69457	2.90049	3.10641	0.00555646	0.00331036	0.0648867	0.0527031
chr3	47830379	47830479	1420252	0	+	0.42	(0.408,0.44]	chr3	149235	2	SS3_PROX	SS3_PROX:INTRON	DHX30	ENSG00000132153.15	ENST00000395745.6:ENST00000445061.6:ENST00000441384.5:ENST00000348968.8:ENST00000446256.6:ENST00000619982.4:ENST00000457607.1:ENST00000470959.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	60	2	2.60048	2.90041	3.20034	0.00484324	0.00398025	0.0640618	0.0549214
chr5	65929903	65930003	2370877	0	+	0.45	(0.44,0.476]	chr5	228472	27	INTRON	INTRON	ERBIN	ENSG00000112851.15	ENST00000380943.6:ENST00000507490.1:ENST00000416865.6:ENST00000380935.5:ENST00000284037.10:ENST00000380938.6:ENST00000511297.5:ENST00000506030.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	153	2	2.50297	2.900365	3.29776	0.00135188	9.44593e-6	0.0336321	0.00222322
chr22	21002581	21002681	7481092	0	+	0.37	(0.35,0.378]	chr22	763196	8	EXON_LNCRNA	EXON_LNCRNA	THAP7-AS1	ENSG00000230513.3	ENST00000436079.1:ENST00000429962.2:ENST00000690091.1:ENST00000692696.1:ENST00000690994.1:ENST00000692310.1:ENST00000691817.1:ENST00000691971.1:ENST00000452284.1:ENST00000688839.1:ENST00000689136.1:ENST00000690913.1:ENST00000693741.1:ENST00000662660.1	lncRNA	lncRNA	lncRNA	lncRNA	3	74	2	1.90405	2.90029	3.89653	0.0482651	2.61932e-4	0.171852	0.0149313
chr6	147666204	147666303	2990657	0	+	0.363636	(0.35,0.378]	chr6	280159	50	INTRON	INTRON	ENSG00000227681	ENSG00000227681.5	ENST00000427015.1:ENST00000432506.5	lncRNA	lncRNA	lncRNA	lncRNA	4	79	2	2.10109	2.900185	3.69928	0.014685	3.94786e-4	0.0983813	0.0178567
chr5	132940829	132940929	2725042	0	-	0.53	(0.515,0.57]	chr5	256349	32	INTRON	INTRON	AFF4	ENSG00000072364.13	ENST00000265343.10:ENST00000378595.7:ENST00000491831.5:ENST00000465484.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	9	143	2	2.79153	2.9000399999999997	3.00855	6.28135e-4	8.31213e-6	0.023031	0.00207935
chr1	214617484	214617582	313681	0	+	0.367347	(0.35,0.378]	chr1	36082	21	INTRON	INTRON	CENPF	ENSG00000117724.14	ENST00000366955.8	protein_coding	protein_coding	protein_coding	protein_coding	3	65	2	2.76192	2.90003	3.03814	0.00767003	0.00265021	0.075364	0.0474328
chr1	37980185	37980285	426433	0	-	0.53	(0.515,0.57]	chr1	51710	2	SS5_PROX	SS5_PROX:INTRON	SF3A3	ENSG00000183431.12	ENST00000373019.5:ENST00000489537.5:ENST00000461869.5:ENST00000470585.5:ENST00000488934.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	39	2	2.83188	2.90001	2.96814	0.0108207	0.00756432	0.0920575	0.0749063
chr11	3370642	3370742	4893768	0	-	0.55	(0.515,0.57]	chr11	458684	3	SS5_PROX	SS5_PROX:INTRON	ZNF195	ENSG00000005801.18	ENST00000528796.5:ENST00000399602.9:ENST00000354599.10:ENST00000343338.11:ENST00000620374.4:ENST00000649622.1:ENST00000429541.6:ENST00000005082.13:ENST00000526601.5:ENST00000438262.6:ENST00000528410.5:ENST00000528218.5:ENST00000529789.5:ENST00000525313.6:ENST00000533036.5:ENST00000529228.5:ENST00000529678.5:ENST00000427810.6:ENST00000534569.5:ENST00000524857.5:ENST00000530643.5:ENST00000618467.4:ENST00000330692.11:ENST00000525502.5:ENST00000526501.5:ENST00000532539.1:ENST00000529085.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	39	2	2.83188	2.90001	2.96814	0.0108207	0.00756432	0.0920575	0.0749063
chrX	101150456	101150555	7694677	0	+	0.545455	(0.515,0.57]	chrX	787429	19	INTRON	INTRON	CENPI	ENSG00000102384.14	ENST00000684367.1:ENST00000423383.3:ENST00000682095.1:ENST00000372927.5	protein_coding	protein_coding	protein_coding	protein_coding	3	53	2	2.83501	2.89984	2.96467	0.0117686	8.94279e-4	0.0894475	0.0273458
chr19	5069411	5069511	7004428	0	+	0.53	(0.515,0.57]	chr19	694835	214	INTRON	INTRON	KDM4B	ENSG00000127663.15	ENST00000159111.9:ENST00000611640.4:ENST00000381759.8:ENST00000536461.5:ENST00000592175.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	79	2	2.21892	2.89978	3.58064	0.00198472	6.54693e-4	0.0411469	0.0233335
chrX	44933584	44933684	7649206	0	+	0.48	(0.476,0.515]	chrX	782726	592	INTRON	INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000675440.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000621147.5:ENST00000475233.1:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	82	2	2.34237	2.89974	3.45711	0.00223831	0.00140905	0.0435144	0.0340865
chr2	53867579	53867679	1119488	0	-	0.49	(0.476,0.515]	chr2	119860	3	INTRON	INTRON	PSME4	ENSG00000068878.15	ENST00000404125.6:ENST00000389993.7:ENST00000476586.5:ENST00000488687.5:ENST00000466539.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	60	2	2.21677	2.8996	3.58243	0.0207026	6.18479e-4	0.110999	0.0223951
chr1	21140594	21140693	393267	0	-	0.373737	(0.35,0.378]	chr1	46836	276	INTRON	INTRON	EIF4G3	ENSG00000075151.24	ENST00000374935.7:ENST00000602326.6:ENST00000685872.1:ENST00000686579.1:ENST00000688741.1:ENST00000400422.6:ENST00000634879.2:ENST00000693470.1:ENST00000685814.1:ENST00000356916.7:ENST00000682284.1:ENST00000438975.5:ENST00000411888.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	29	2	1.82887	2.899595	3.97032	0.0584878	0.0578667	0.189395	0.167723
chr16	71743593	71743693	6513788	0	-	0.37	(0.35,0.378]	chr16	631077	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	AP1G1	ENSG00000166747.13	ENST00000299980.9:ENST00000569748.5:ENST00000564155.5:ENST00000393512.7:ENST00000565009.5:ENST00000565642.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	29	2	1.82887	2.899595	3.97032	0.0584878	0.0578667	0.189395	0.167723
chr19	23789156	23789255	7042697	0	+	0.494949	(0.476,0.515]	chr19	702227	18	INTRON	INTRON	RPSAP58	ENSG00000288920.1	ENST00000471224.5:ENST00000692590.1:ENST00000475499.2:ENST00000686829.1:ENST00000689525.1:ENST00000691397.1:ENST00000688405.1:ENST00000687994.1:ENST00000484897.4:ENST00000685490.1:ENST00000462186.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	115	2	2.82251	2.8995699999999998	2.97663	6.78359e-4	2.26055e-4	0.023827	0.0132815
chr1	174183243	174183343	257341	0	+	0.48	(0.476,0.515]	chr1	30720	232	INTRON	INTRON	RABGAP1L	ENSG00000152061.24	ENST00000357444.10:ENST00000251507.8:ENST00000681986.1:ENST00000635248.1:ENST00000457696.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	82	2	1.99457	2.89956	3.80455	0.009924	3.04782e-4	0.0877296	0.0161236
chr7	100126406	100126506	3585612	0	-	0.59	(0.57,1]	chr7	334240	67	INTRON	INTRON	ENSG00000242798	ENSG00000242798.1	ENST00000494221.1	lncRNA	lncRNA	lncRNA	lncRNA	4	39	2	2.23972	2.8994600000000004	3.5592	0.00670296	4.21089e-4	0.0707084	0.0183576
chr19	17310948	17311047	7029851	0	+	0.494949	(0.476,0.515]	chr19	699973	9	INTRON	INTRON	DDA1	ENSG00000130311.11	ENST00000593466.5:ENST00000359866.9:ENST00000596582.1:ENST00000596925.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	60	2	2.49941	2.8994	3.29939	0.00811651	0.00211868	0.0766625	0.0425644
chr4	110072235	110072335	2226468	0	-	0.52	(0.515,0.57]	chr4	218012	121	INTRON	INTRON	ELOVL6	ENSG00000170522.10	ENST00000394607.7:ENST00000302274.8:ENST00000514184.5:ENST00000506625.5:ENST00000506461.1:ENST00000503885.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	94	2	2.51725	2.89935	3.28145	8.36453e-4	2.1933e-4	0.0263691	0.0135522
chr9	37153640	37153740	4117990	0	+	0.39	(0.378,0.408]	chr9	375382	58	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000322831.6:ENST00000461038.5:ENST00000488607.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	175	2	2.5214	2.8992449999999996	3.27709	7.42685e-4	1.16351e-5	0.0250442	0.0025192
chr9	120817612	120817709	4335491	0	-	0.402062	(0.378,0.408]	chr9	398271	17	UTR3	UTR3:EXON_MRNA:INTRON	PSMD5	ENSG00000095261.14	ENST00000373920.6:ENST00000210313.8	protein_coding	protein_coding	protein_coding	protein_coding	5	101	2	2.76893	2.89921	3.02949	0.00316735	1.73068e-4	0.0503085	0.0114086
chr4	67742929	67743029	1965509	0	+	0.45	(0.44,0.476]	chr4	197326	102	INTRON	INTRON	UBA6-DT	ENSG00000248049.8	ENST00000656992.1:ENST00000500538.7:ENST00000665294.1:ENST00000667140.1:ENST00000663060.1:ENST00000660972.1:ENST00000502758.1	lncRNA	lncRNA	lncRNA	lncRNA	4	80	2	2.7096	2.899185	3.08877	0.00376205	5.52878e-4	0.0539118	0.021371
chr21	29028374	29028474	7390000	0	+	0.46	(0.44,0.476]	chr21	752964	4	SS5_PROX	SS5_PROX:INTRON	USP16	ENSG00000156256.15	ENST00000399975.7:ENST00000334352.8:ENST00000474835.5:ENST00000399973.1:ENST00000399976.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	85	2	2.54944	2.899075	3.24871	0.00591346	3.52936e-4	0.0694038	0.0174637
chr22	41516670	41516759	7524030	0	+	0.393258	(0.378,0.408]	chr22	768995	2	EXON_MRNA	EXON_MRNA:INTRON	ACO2	ENSG00000100412.17	ENST00000676748.1:ENST00000677554.1:ENST00000679320.1:ENST00000678600.1:ENST00000678394.1:ENST00000676792.1:ENST00000678688.1:ENST00000677516.1:ENST00000678788.1:ENST00000677007.1:ENST00000676959.1:ENST00000679311.1:ENST00000216254.9:ENST00000676714.1:ENST00000466237.2:ENST00000677427.1:ENST00000678454.1:ENST00000677153.1:ENST00000678819.1:ENST00000396512.3:ENST00000678269.1:ENST00000677532.1:ENST00000679264.1:ENST00000677698.1:ENST00000676822.1:ENST00000676664.1:ENST00000677492.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	103	2	1.91661	2.89907	3.88153	0.00588056	2.49905e-4	0.0691502	0.0146029
chr16	1862813	1862911	6430262	0	-	0.530612	(0.515,0.57]	chr16	618392	3	INTRON	INTRON	MEIOB	ENSG00000162039.17	ENST00000325962.9:ENST00000470044.5:ENST00000397344.7:ENST00000496541.6:ENST00000460494.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	113	2	2.84736	2.89906	2.95076	4.72534e-4	6.84086e-5	0.0201458	0.00684369
chr1	45616962	45617042	93556	0	+	0.5125	(0.476,0.515]	chr1	12650	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NASP	ENSG00000132780.17	ENST00000537798.5:ENST00000350030.8:ENST00000372052.8:ENST00000351223.7:ENST00000530073.5:ENST00000481782.1:ENST00000531612.5:ENST00000534450.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	49	2	1.82595	2.89898	3.97201	0.030904	0.0202339	0.143385	0.109955
chr2	230730450	230730550	1030335	0	+	0.54	(0.515,0.57]	chr2	110002	160	INTRON	INTRON	CAB39	ENSG00000135932.12	ENST00000258418.10:ENST00000409788.7:ENST00000410084.7	protein_coding	protein_coding	protein_coding	protein_coding	7	113	2	2.72308	2.89898	3.07488	2.69455e-4	1.38584e-4	0.0145437	0.0107072
chr17	42503268	42503368	6611756	0	+	0.31	(0.28,0.32]	chr17	644171	4	SS5_PROX	SS5_PROX:INTRON	ATP6V0A1	ENSG00000033627.17	ENST00000393829.6:ENST00000343619.9:ENST00000537728.5:ENST00000264649.10:ENST00000585525.5:ENST00000544137.5:ENST00000587510.5:ENST00000586201.5:ENST00000588138.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	58	2	2.67453	2.898925	3.12332	0.021289	0.00698537	0.123318	0.0718189
chrX	154708237	154708337	7914888	0	-	0.32	(0.28,0.32]	chrX	806091	78	INTRON	INTRON	GAB3	ENSG00000160219.12	ENST00000496390.5:ENST00000424127.3:ENST00000369575.7:ENST00000369568.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	58	2	2.67453	2.898925	3.12332	0.021289	0.00698537	0.123318	0.0718189
chr8	73293150	73293246	3967596	0	-	0.34375	(0.32,0.35]	chr8	364040	1	UTR5	UTR5:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPL7	ENSG00000147604.14	ENST00000352983.7:ENST00000396467.5:ENST00000396466.5:ENST00000396465.5:ENST00000431653.1	protein_coding	protein_coding	protein_coding	protein_coding	8	183	2	2.73007	2.898905	3.06774	3.84645e-4	1.22929e-4	0.0177489	0.00997237
chr5	95778358	95778458	2431726	0	+	0.3	(0.28,0.32]	chr5	233684	78	INTRON	INTRON	RHOBTB3	ENSG00000164292.13	ENST00000379982.8:ENST00000504179.5:ENST00000510313.1	protein_coding	protein_coding	protein_coding	protein_coding	7	157	2	2.13984	2.8988750000000003	3.65791	0.00564909	4.18108e-5	0.0653997	0.00524005
chr10	28570916	28571016	4414183	0	+	0.32	(0.28,0.32]	chr10	407148	325	INTRON	INTRON	WAC	ENSG00000095787.24	ENST00000680735.1:ENST00000375664.8:ENST00000428935.6:ENST00000651598.1:ENST00000628285.3:ENST00000681112.1:ENST00000679570.1:ENST00000375646.5:ENST00000354911.9:ENST00000347934.8:ENST00000420266.6:ENST00000651885.1:ENST00000651441.1:ENST00000679398.1:ENST00000424454.5:ENST00000442148.6:ENST00000448193.5:ENST00000414108.6:ENST00000679428.1:ENST00000439676.5:ENST00000345541.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	255	2	2.39276	2.898795	3.40483	0.00331685	1.92247e-6	0.0512081	8.42956e-4
chr2	149577638	149577737	1242875	0	-	0.30303	(0.28,0.32]	chr2	131921	7	INTRON	INTRON	MMADHC	ENSG00000168288.13	ENST00000303319.10:ENST00000428879.5:ENST00000422782.2	protein_coding	protein_coding	protein_coding	protein_coding	3	80	2	2.62686	2.89865	3.17044	0.0289217	5.14622e-4	0.1274	0.0203753
chr14	91458180	91458276	5955640	0	-	0.385417	(0.378,0.408]	chr14	565402	8	UTR3	UTR3:EXON_MRNA	PPP4R3A	ENSG00000100796.18	ENST00000554943.6:ENST00000554684.5:ENST00000555462.5	protein_coding	protein_coding	protein_coding	protein_coding	5	85	2	2.28793	2.8985	3.50907	0.00291235	0.00127828	0.0494641	0.0326395
chr1	40704091	40704191	82483	0	+	0.6	(0.57,1]	chr1	10706	80	INTRON	INTRON	NFYC	ENSG00000066136.21	ENST00000467203.5:ENST00000424419.6:ENST00000427410.6:ENST00000447388.8:ENST00000425457.6:ENST00000453631.5:ENST00000456393.6:ENST00000372654.5:ENST00000534399.5:ENST00000372653.5:ENST00000372669.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	25	2	2.66438	2.89846	3.13254	0.0171563	0.00310655	0.104099	0.0512344
chr6	149746495	149746560	3246974	0	-	0.630769	(0.57,1]	chr6	301712	1	UTR5	UTR5:EXON_MRNA:SS3_PROX:INTRON	NUP43	ENSG00000120253.14	ENST00000340413.7:ENST00000367404.8:ENST00000403890.7:ENST00000367402.6:ENST00000543637.1:ENST00000463048.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	25	2	2.66438	2.89846	3.13254	0.0171563	0.00310655	0.104099	0.0512344
chr4	159130702	159130802	2073776	0	+	0.46	(0.44,0.476]	chr4	205172	261	INTRON	INTRON	RAPGEF2	ENSG00000109756.10	ENST00000644474.1:ENST00000691494.1:ENST00000505478.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	84	2	2.53021	2.89845	3.26669	0.00305435	8.87528e-4	0.0493883	0.0271952
chr14	52546061	52546160	5894430	0	-	0.434343	(0.408,0.44]	chr14	559763	13	INTRON	INTRON	TXNDC16	ENSG00000087301.9	ENST00000281741.9:ENST00000554399.1:ENST00000557374.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	60	2	2.73941	2.89823	3.05705	0.00658331	0.002744	0.0701901	0.0484022
chr4	450919	451018	2092688	0	-	0.20202	[0,0.28]	chr4	206783	61	INTRON	INTRON	ABCA11P:ZNF721	ENSG00000251595.7:ENSG00000182903.16	ENST00000451020.6:ENST00000514396.5:ENST00000507854.1:ENST00000515578.5:ENST00000506646.5:ENST00000507078.1:ENST00000511833.3:ENST00000338977.5:ENST00000505900.1	protein_coding	protein_coding	protein_coding:transcribed_processed_pseudogene	protein_coding:nonsense_mediated_decay:processed_transcript	4	104	2	2.19624	2.898215	3.60019	0.0108335	0.00172089	0.0920781	0.0374701
chr1	93116309	93116405	162917	0	+	0.4375	(0.408,0.44]	chr1	17593	3	INTRON	INTRON	MTF2	ENSG00000143033.18	ENST00000540243.5:ENST00000545708.5:ENST00000370298.9:ENST00000473430.5:ENST00000494963.5:ENST00000471953.5:ENST00000370303.4:ENST00000467953.5:ENST00000497976.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	72	2	2.30838	2.898155	3.48793	0.00547703	0.00130904	0.0671198	0.0331539
chr10	125148341	125148441	4714221	0	-	0.63	(0.57,1]	chr10	434933	102	INTRON	INTRON	CTBP2	ENSG00000175029.17	ENST00000337195.9:ENST00000411419.6:ENST00000494626.6:ENST00000531469.5:ENST00000460976.5:ENST00000476817.1:ENST00000530884.1:ENST00000467395.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	33	2	2.23711	2.898155	3.5592	0.0172108	4.21089e-4	0.104099	0.0183576
chr16	70570594	70570649	6385645	0	+	0.618182	(0.57,1]	chr16	614007	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SF3B3	ENSG00000189091.13	ENST00000302516.10:ENST00000565990.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	33	2	2.23711	2.898155	3.5592	0.0172108	4.21089e-4	0.104099	0.0183576
chr10	3120244	3120344	4382075	0	+	0.68	(0.57,1]	chr10	404145	2	SS5_PROX	SS5_PROX:INTRON	PFKP	ENSG00000067057.18	ENST00000381125.9:ENST00000381075.7:ENST00000678206.1:ENST00000678089.1:ENST00000676796.1:ENST00000415005.6:ENST00000413079.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	25	2	2.79889	2.89809	2.99729	0.0110274	0.00538023	0.0927187	0.0642754
chr17	82898269	82898367	6695697	0	+	0.653061	(0.57,1]	chr17	654985	19	INTRON	INTRON	TBCD	ENSG00000141556.22	ENST00000682479.1:ENST00000682722.1:ENST00000684464.1:ENST00000684544.1:ENST00000681983.1:ENST00000684361.1:ENST00000683184.1:ENST00000683282.1:ENST00000684408.1:ENST00000355528.9:ENST00000683444.1:ENST00000684776.1:ENST00000683041.1:ENST00000684760.1:ENST00000684349.1:ENST00000682213.1:ENST00000683009.1:ENST00000682921.1:ENST00000539345.6:ENST00000684000.1:ENST00000684188.1:ENST00000684429.1:ENST00000682610.1:ENST00000683821.1:ENST00000682654.1:ENST00000576160.6:ENST00000571712.5:ENST00000576996.5:ENST00000574801.5:ENST00000683584.1:ENST00000682099.1:ENST00000684559.1:ENST00000571316.5:ENST00000576760.5:ENST00000572984.5:ENST00000683839.1:ENST00000574975.5:ENST00000572953.5:ENST00000571796.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	25	2	2.79889	2.89809	2.99729	0.0110274	0.00538023	0.0927187	0.0642754
chr12	91466335	91466435	5383879	0	-	0.41	(0.408,0.44]	chr12	513479	666	INTRON	INTRON	ENSG00000289605	ENSG00000289605.1	ENST00000685093.1	lncRNA	lncRNA	lncRNA	lncRNA	3	60	2	2.55103	2.898065	3.2451	0.00587353	0.00337792	0.0690758	0.0516884
chr8	43062913	43063011	3745914	0	+	0.397959	(0.378,0.408]	chr8	348521	34	INTRON	INTRON	FNTA	ENSG00000168522.13	ENST00000533559.5:ENST00000526755.5:ENST00000302279.8:ENST00000527153.5:ENST00000533383.5:ENST00000533998.5:ENST00000524546.5:ENST00000531266.5:ENST00000533368.1:ENST00000525699.5:ENST00000529687.5:ENST00000533336.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	153	2	2.38009	2.89777	3.41545	0.00145972	1.73194e-5	0.0345816	0.00316166
chr1	35187658	35187751	420545	0	-	0.473118	(0.44,0.476]	chr1	50664	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SFPQ	ENSG00000116560.12	ENST00000470472.5:ENST00000460428.5:ENST00000696553.1:ENST00000357214.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	16	243	2	2.1342	2.8977399999999998	3.66128	5.44282e-4	3.16312e-6	0.0215237	0.00115089
chr9	136405503	136405602	4374381	0	-	0.454545	(0.44,0.476]	chr9	402859	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ENTR1	ENSG00000165689.17	ENST00000357365.8:ENST00000298537.11:ENST00000371725.7:ENST00000417512.1:ENST00000486441.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	81	2	2.77169	2.897675	3.02366	0.00603307	8.89744e-4	0.0700813	0.0274757
chr19	8322465	8322562	7010330	0	+	0.56701	(0.515,0.57]	chr19	696064	3	UTR3	UTR3:EXON_MRNA	RPS28	ENSG00000233927.5	ENST00000449223.3:ENST00000602140.1:ENST00000600659.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	57	2	1.94945	2.89764	3.84583	0.0414068	1.82082e-4	0.161557	0.0122264
chr7	119688659	119688759	3628223	0	-	0.39	(0.378,0.408]	chr7	337315	1882	INTRON	INTRON	LINC02476	ENSG00000225546.6	ENST00000660268.1	lncRNA	lncRNA	lncRNA	lncRNA	5	101	2	2.6411	2.8976249999999997	3.15415	0.00174684	4.11608e-4	0.0375932	0.0181365
chr6	167912164	167912256	3035207	0	+	0.326087	(0.32,0.35]	chr6	282795	1	INTRON	INTRON	AFDN	ENSG00000130396.21	ENST00000683244.1:ENST00000351017.9:ENST00000344191.8:ENST00000392112.5:ENST00000392108.7:ENST00000400822.7:ENST00000447894.6:ENST00000366809.6:ENST00000366806.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	98	2	2.5542	2.897535	3.24087	0.00420518	9.3945e-4	0.0572185	0.0280187
chr12	45897791	45897890	5124419	0	+	0.363636	(0.35,0.378]	chr12	483398	37	INTRON	INTRON	ARID2	ENSG00000189079.17	ENST00000334344.11:ENST00000479608.5:ENST00000444670.5:ENST00000457135.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	121	2	2.39111	2.897425	3.40374	0.00260035	1.20032e-4	0.0454405	0.00938389
chr3	33809799	33809898	1394491	0	+	0.323232	(0.32,0.35]	chr3	146021	99	INTRON	INTRON	PDCD6IP	ENSG00000170248.15	ENST00000457054.6:ENST00000648706.1:ENST00000435909.5:ENST00000430877.5:ENST00000413073.1:ENST00000307296.8:ENST00000477798.5:ENST00000498147.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	173	2	2.89469	2.89738	2.90007	6.9734e-4	6.96902e-5	0.024224	0.00692056
chr2	84975544	84975644	820307	0	+	0.36	(0.35,0.378]	chr2	91419	29	INTRON	INTRON	KCMF1	ENSG00000176407.18	ENST00000456682.1:ENST00000409785.9:ENST00000428691.5:ENST00000453448.1	protein_coding	protein_coding	protein_coding	protein_coding	9	125	2	1.55433	2.89731	4.24029	0.0164412	4.91603e-5	0.110041	0.00608708
chr15	59685277	59685376	6194753	0	-	0.525253	(0.515,0.57]	chr15	590239	24	INTRON	INTRON	BNIP2	ENSG00000140299.13	ENST00000267859.8:ENST00000607373.6:ENST00000612191.4:ENST00000415213.7:ENST00000560458.5:ENST00000417312.5:ENST00000477543.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	55	2	2.88267	2.897035	2.9114	0.00826019	0.00152842	0.0813266	0.0353936
chr7	44121036	44121135	3527125	0	-	0.40404	(0.378,0.408]	chr7	328917	26	INTRON	INTRON	POLD2	ENSG00000106628.12	ENST00000610533.6:ENST00000406581.6:ENST00000223361.7:ENST00000452185.5:ENST00000436844.5:ENST00000433715.5:ENST00000463464.5:ENST00000470867.5:ENST00000461116.1:ENST00000456038.5:ENST00000418438.1:ENST00000496539.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	47	2	2.46373	2.896995	3.33026	0.0382831	0.00189824	0.141795	0.0402736
chr11	65997130	65997228	4967909	0	-	0.540816	(0.515,0.57]	chr11	468355	7	UTR3	UTR3:EXON_MRNA	EIF1AD	ENSG00000175376.9	ENST00000312234.6:ENST00000533544.6:ENST00000526451.5	protein_coding	protein_coding	protein_coding	protein_coding	5	91	2	2.62817	2.896845	3.16552	0.004048	8.25408e-5	0.0578376	0.00812487
chr11	68213322	68213415	4973206	0	-	0.806452	(0.57,1]	chr11	469527	3	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	KMT5B	ENSG00000110066.15	ENST00000427752.6:ENST00000405515.5:ENST00000402789.5:ENST00000402185.6:ENST00000458496.1:ENST00000466295.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	39	2	2.1643	2.8967	3.6291	0.00941704	3.02868e-4	0.0861183	0.0160895
chr6	147718649	147718749	2991183	0	+	0.4	(0.378,0.408]	chr6	280167	258	INTRON	INTRON	ENSG00000227681	ENSG00000227681.5	ENST00000427015.1:ENST00000432506.5:ENST00000442094.5:ENST00000434985.1	lncRNA	lncRNA	lncRNA	lncRNA	5	87	2	1.64169	2.8966149999999997	4.15154	0.0377255	3.36054e-5	0.14078	0.00463632
chr4	70925034	70925134	1970732	0	+	0.41	(0.408,0.44]	chr4	197571	221	INTRON	INTRON	MOB1B	ENSG00000173542.9	ENST00000502869.5:ENST00000509041.5:ENST00000309395.7:ENST00000396051.2:ENST00000511449.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	125	2	2.75428	2.89655	3.03882	9.66897e-4	1.21542e-4	0.0282401	0.00942499
chr5	176357075	176357175	2775258	0	-	0.52	(0.515,0.57]	chr5	261337	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	KIAA1191	ENSG00000122203.15	ENST00000393725.6:ENST00000298569.9:ENST00000393728.6:ENST00000614420.4:ENST00000620366.4:ENST00000510164.5:ENST00000533553.5:ENST00000506983.5:ENST00000503082.5:ENST00000504688.5:ENST00000506668.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	52	2	2.21273	2.89654	3.58035	0.0196151	5.21239e-4	0.109486	0.0204523
chr20	38942922	38943021	7272589	0	+	0.494949	(0.476,0.515]	chr20	739060	4	INTRON	INTRON	FAM83D	ENSG00000101447.15	ENST00000619304.4:ENST00000619850.2	protein_coding	protein_coding	protein_coding	protein_coding	4	73	2	2.01953	2.8964350000000003	3.77334	0.0163662	3.52709e-4	0.109586	0.0174637
chr7	75473303	75473403	3558800	0	-	0.37	(0.35,0.378]	chr7	331545	307	INTRON	INTRON	POM121C	ENSG00000272391.6	ENST00000615331.5:ENST00000398379.2	protein_coding	protein_coding	protein_coding	protein_coding	10	195	2	2.8906	2.8964350000000003	2.90227	5.81688e-4	1.85525e-5	0.0223753	0.00329848
chr16	23464493	23464588	6464101	0	-	0.452632	(0.44,0.476]	chr16	623808	11	UTR3	UTR3:EXON_MRNA	GGA2	ENSG00000103365.15	ENST00000309859.8:ENST00000567468.5	protein_coding	protein_coding	protein_coding	protein_coding	5	86	2	2.28698	2.89641	3.50584	0.0035357	8.66138e-4	0.052885	0.0266729
chr1	89840057	89840156	159714	0	+	0.40404	(0.378,0.408]	chr1	17274	59	INTRON	INTRON	LRRC8D	ENSG00000171492.14	ENST00000525774.5:ENST00000337338.9:ENST00000394593.7:ENST00000532201.5	protein_coding	protein_coding	protein_coding	protein_coding	3	63	2	2.84663	2.89638	2.94613	0.0133954	0.00112461	0.0946278	0.0308177
chr6	17920248	17920348	3067878	0	-	0.39	(0.378,0.408]	chr6	285100	217	INTRON	INTRON	KIF13A	ENSG00000137177.20	ENST00000378814.9:ENST00000259711.11:ENST00000378826.6:ENST00000378843.6:ENST00000636847.1:ENST00000507576.1:ENST00000505588.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	63	2	2.84663	2.89638	2.94613	0.0133954	0.00112461	0.0946278	0.0308177
chr6	166984062	166984161	3264479	0	-	0.30303	(0.28,0.32]	chr6	303067	109	INTRON	INTRON	ENSG00000227598	ENSG00000227598.1	ENST00000444102.1	lncRNA	lncRNA	lncRNA	lncRNA	2	56	2	2.57195	2.896345	3.22074	0.0331711	0.00362783	0.133994	0.055479
chr17	46101991	46102091	6783954	0	-	0.34	(0.32,0.35]	chr17	669208	69	INTRON	INTRON	KANSL1	ENSG00000120071.15	ENST00000574590.6:ENST00000572904.6:ENST00000432791.7:ENST00000575318.6:ENST00000638275.1:ENST00000262419.10:ENST00000648792.1:ENST00000639531.1:ENST00000639150.1:ENST00000639853.1:ENST00000571698.2:ENST00000639375.1:ENST00000577114.2:ENST00000638269.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	95	2	2.18299	2.896335	3.60968	0.00505063	0.00105196	0.0646039	0.029592
chr6	13627542	13627640	3058369	0	-	0.520408	(0.515,0.57]	chr6	284482	14	INTRON	INTRON	RANBP9	ENSG00000010017.13	ENST00000011619.6:ENST00000469916.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	62	2	2.53705	2.89626	3.25547	0.00261721	0.00186194	0.0455413	0.039946
chr1	236822422	236822522	342775	0	+	0.47	(0.44,0.476]	chr1	39859	55	INTRON	INTRON	MTR	ENSG00000116984.15	ENST00000680454.1:ENST00000366577.10:ENST00000674797.2:ENST00000652435.1:ENST00000679569.1:ENST00000650888.1:ENST00000463959.1:ENST00000535889.6:ENST00000651455.1:ENST00000681102.1:ENST00000679842.1:ENST00000681177.1:ENST00000681937.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	46	2	2.66433	2.89616	3.12799	0.0194358	0.0050635	0.119831	0.0621733
chr12	130874084	130874176	5247111	0	+	0.467391	(0.44,0.476]	chr12	498938	1	EXON_MRNA	EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RAN	ENSG00000132341.12	ENST00000448750.7:ENST00000536606.5:ENST00000543796.6:ENST00000541630.5:ENST00000392369.6:ENST00000477395.5:ENST00000535090.5:ENST00000541679.7:ENST00000392367.4:ENST00000464211.6:ENST00000539498.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	46	2	2.66433	2.89616	3.12799	0.0194358	0.0050635	0.119831	0.0621733
chr5	54005811	54005911	2617862	0	-	0.45	(0.44,0.476]	chr5	248835	938	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	60	2	2.42996	2.896135	3.36231	0.0104804	0.00161678	0.0855777	0.0369204
chr1	65581408	65581507	138804	0	+	0.353535	(0.35,0.378]	chr1	15518	86	INTRON	INTRON	LEPR	ENSG00000116678.20	ENST00000371060.7:ENST00000371059.7:ENST00000349533.11:ENST00000616738.4:ENST00000344610.12:ENST00000462765.5:ENST00000371058.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	65	2	2.80179	2.896115	2.99044	0.00894806	0.00223906	0.0799922	0.0435144
chr2	168722370	168722470	904827	0	+	0.35	(0.32,0.35]	chr2	99802	40	INTRON	INTRON	CERS6	ENSG00000172292.15	ENST00000392687.4:ENST00000305747.11	protein_coding	protein_coding	protein_coding	protein_coding	2	53	2	2.71269	2.89602	3.07935	0.0181461	0.00724137	0.114853	0.0729826
chr14	101763568	101763667	5818512	0	+	0.626263	(0.57,1]	chr14	551813	2	INTRON	INTRON	PPP2R5C	ENSG00000078304.20	ENST00000694906.1:ENST00000422945.6:ENST00000554442.5:ENST00000556068.5:ENST00000556260.6:ENST00000328724.9:ENST00000554504.1:ENST00000553890.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	70	2	2.43863	2.895955	3.35328	2.75362e-4	8.52328e-5	0.0147997	0.00825602
chr2	38342915	38343003	1098999	0	-	0.318182	(0.28,0.32]	chr2	117857	6	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	ATL2:ENSG00000288994	ENSG00000119787.14:ENSG00000288994.1	ENST00000378954.9:ENST00000406122.5:ENST00000405384.6:ENST00000402054.5:ENST00000419554.6:ENST00000651368.1:ENST00000452935.6:ENST00000449130.5:ENST00000443098.5:ENST00000456736.5:ENST00000474535.2:ENST00000472097.1:ENST00000451483.1:ENST00000688110.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA	3	78	2	2.73077	2.895855	3.06094	0.0220748	8.54457e-4	0.115395	0.0265194
chr19	7928846	7928944	7130167	0	-	0.408163	(0.378,0.408]	chr19	718299	8	EXON_MRNA	EXON_MRNA:INTRON	TIMM44	ENSG00000104980.8	ENST00000270538.8:ENST00000599939.1:ENST00000595565.5:ENST00000595831.5:ENST00000598968.5:ENST00000599650.1:ENST00000598481.1:ENST00000595876.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	120	2	2.73774	2.895805	3.05387	0.00113735	1.51003e-4	0.0307766	0.0106137
chr12	48659567	48659666	5319035	0	-	0.414141	(0.408,0.44]	chr12	506325	10	INTRON	INTRON	KANSL2	ENSG00000139620.13	ENST00000420613.7:ENST00000548147.5:ENST00000550347.5:ENST00000546701.5:ENST00000548701.5:ENST00000547087.5:ENST00000549574.5:ENST00000553086.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	161	2	2.50586	2.89576	3.28566	2.85208e-4	6.60258e-5	0.0150568	0.0071649
chr1	150344847	150344947	221593	0	+	0.26	[0,0.28]	chr1	25021	3	SS5_PROX	SS5_PROX:INTRON	PRPF3	ENSG00000117360.13	ENST00000324862.7:ENST00000467329.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	148	2	1.27362	2.895635	4.51765	0.0785647	1.24168e-5	0.19821	0.00262819
chr3	72419109	72419209	1745646	0	-	0.44	(0.408,0.44]	chr3	177368	386	INTRON	INTRON	RYBP	ENSG00000163602.12	ENST00000477973.5	protein_coding	protein_coding	protein_coding	protein_coding	4	73	2	1.92319	2.895635	3.86808	0.0247322	1.49394e-4	0.12011	0.0106137
chr2	169598090	169598190	906608	0	+	0.51	(0.476,0.515]	chr2	100021	50	INTRON	INTRON	PPIG	ENSG00000138398.17	ENST00000678088.1:ENST00000677392.1:ENST00000433207.6:ENST00000679324.1:ENST00000414307.6:ENST00000676508.1:ENST00000260970.8:ENST00000678695.1:ENST00000409714.7:ENST00000530152.5:ENST00000677750.1:ENST00000676557.1:ENST00000678721.1:ENST00000462903.6:ENST00000676756.1:ENST00000679107.1:ENST00000678499.1:ENST00000678638.1:ENST00000448752.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	121	2	2.46713	2.89554	3.32395	6.29989e-4	2.34553e-4	0.0226424	0.0140266
chr10	5447358	5447457	4384209	0	+	0.282828	(0.28,0.32]	chr10	404411	1	INTRON	INTRON	NET1	ENSG00000173848.19	ENST00000355029.9:ENST00000449083.5:ENST00000486354.1:ENST00000380359.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	93	2	2.74601	2.89543	3.04485	0.00894006	0.00100442	0.0799922	0.0292217
chr6	89770366	89770465	3161528	0	-	0.343434	(0.32,0.35]	chr6	294808	75	INTRON	INTRON	MDN1	ENSG00000112159.12	ENST00000369393.8:ENST00000629399.2:ENST00000439638.1	protein_coding	protein_coding	protein_coding	protein_coding	6	129	2	2.30766	2.895355	3.48305	0.00406148	8.91094e-5	0.0558167	0.00793468
chr3	72423207	72423307	1745687	0	-	0.33	(0.32,0.35]	chr3	177368	427	INTRON	INTRON	RYBP	ENSG00000163602.12	ENST00000477973.5	protein_coding	protein_coding	protein_coding	protein_coding	7	146	2	2.79167	2.8953249999999997	2.99898	0.00148392	1.31209e-4	0.034977	0.00987152
chr16	68110291	68110391	6370473	0	+	0.5	(0.476,0.515]	chr16	612188	207	INTRON	INTRON	ENSG00000261864:NFATC3	ENSG00000261864.1:ENSG00000072736.19	ENST00000548144.1:ENST00000563319.5:ENST00000569766.5:ENST00000553077.5:ENST00000566301.5:ENST00000549350.5:ENST00000566893.5:ENST00000575270.5:ENST00000561714.5:ENST00000346183.8:ENST00000568466.6:ENST00000539828.6:ENST00000562171.1:ENST00000349223.9:ENST00000329524.8:ENST00000379165.8:ENST00000562926.5:ENST00000570212.5:ENST00000563796.5:ENST00000567152.5:ENST00000563288.5:ENST00000535127.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA:processed_transcript	7	122	2	2.03674	2.89532	3.7539	0.00599526	1.33371e-5	0.0674604	0.00271419
chr9	136834708	136834801	4222020	0	+	0.548387	(0.515,0.57]	chr9	387710	5	INTRON	INTRON	RABL6	ENSG00000196642.19	ENST00000311502.12:ENST00000484471.6:ENST00000371663.10:ENST00000357466.6:ENST00000464941.5:ENST00000629216.2:ENST00000466096.5:ENST00000461992.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	107	2	2.48387	2.8952549999999997	3.30664	6.04008e-4	1.4883e-4	0.0226059	0.0105921
chr9	136808726	136808826	4221750	0	+	0.53	(0.515,0.57]	chr9	387667	4	SS5_PROX	SS5_PROX:INTRON	RABL6	ENSG00000196642.19	ENST00000371671.9:ENST00000311502.12:ENST00000484471.6:ENST00000371663.10:ENST00000357466.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	63	2	2.364	2.89522	3.42644	0.00447856	0.00106731	0.0593175	0.0300133
chr3	5135271	5135371	1353705	0	+	0.39	(0.378,0.408]	chr3	142361	63	INTRON	INTRON	ARL8B	ENSG00000134108.14	ENST00000429403.5:ENST00000256496.8:ENST00000455168.5:ENST00000444332.1:ENST00000419534.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	103	2	2.10212	2.89496	3.6878	0.0141232	2.09062e-5	0.0959618	0.00353628
chr15	75866159	75866258	6065290	0	+	0.434343	(0.408,0.44]	chr15	577549	58	INTRON	INTRON	UBE2Q2	ENSG00000140367.12	ENST00000569423.5:ENST00000267938.9:ENST00000561723.5:ENST00000561851.5:ENST00000426727.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	45	2	2.89193	2.89494	2.89795	0.0110735	0.00950364	0.0873897	0.0863579
chr16	18142056	18142156	6454054	0	-	0.42	(0.408,0.44]	chr16	621960	1383	INTRON	INTRON	ENSG00000259929:ENSG00000260242	ENSG00000259929.5:ENSG00000260242.1	ENST00000567304.1:ENST00000563866.1	lncRNA	lncRNA	lncRNA	lncRNA	2	45	2	2.89193	2.89494	2.89795	0.0110735	0.00950364	0.0873897	0.0863579
chr16	29683298	29683398	6335422	0	+	0.49	(0.476,0.515]	chr16	606813	37	INTRON	INTRON	QPRT	ENSG00000103485.19	ENST00000449759.2:ENST00000219771.7:ENST00000395384.9:ENST00000562473.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	82	2	1.95469	2.8949	3.83511	0.0115753	2.63754e-4	0.0962115	0.0149561
chr17	30759190	30759290	6590081	0	+	0.39	(0.378,0.408]	chr17	640865	3	SS3_PROX	SS3_PROX:INTRON	SUZ12P1	ENSG00000264538.7	ENST00000578070.5:ENST00000579526.5:ENST00000690405.1:ENST00000578195.6:ENST00000582557.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	4	79	2	2.51043	2.89475	3.27907	0.00304007	0.0023379	0.0493883	0.0442989
chr10	74004859	74004959	4454568	0	+	0.5	(0.476,0.515]	chr10	411385	61	INTRON	INTRON	VCL	ENSG00000035403.18	ENST00000623461.3:ENST00000372755.7:ENST00000624354.3:ENST00000211998.10:ENST00000478896.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	96	2	2.64581	2.89472	3.14363	0.00154394	4.25082e-4	0.0357205	0.018441
chr2	202299543	202299638	985269	0	+	0.294737	(0.28,0.32]	chr2	105780	13	INTRON	INTRON	NOP58	ENSG00000055044.11	ENST00000264279.10	protein_coding	protein_coding	protein_coding	protein_coding	3	75	2	2.55521	2.89438	3.23355	0.0067419	0.004869	0.0739405	0.0607461
chr5	10739036	10739136	2568105	0	-	0.54	(0.515,0.57]	chr5	246128	44	INTRON	INTRON	DAP	ENSG00000112977.16	ENST00000230895.11:ENST00000432074.2:ENST00000514882.5:ENST00000508253.5:ENST00000510546.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	64	2	2.4745	2.89419	3.31388	0.00279583	0.00174704	0.0469265	0.0386026
chr8	92877012	92877112	3990876	0	-	0.25	[0,0.28]	chr8	365359	19	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	FLJ46284	ENSG00000248858.7	ENST00000504861.2:ENST00000623616.1	lncRNA	TEC	lncRNA	TEC:lncRNA	4	103	2	2.48142	2.8941850000000002	3.30695	0.00469836	0.00375221	0.0600108	0.0562562
chr4	39045496	39045596	1949773	0	+	0.41	(0.408,0.44]	chr4	195193	4	SS5_PROX	SS5_PROX:INTRON	KLHL5	ENSG00000109790.18	ENST00000261425.7:ENST00000508137.6	protein_coding	protein_coding	protein_coding	protein_coding	3	60	2	2.49983	2.894175	3.28852	0.00713527	0.00287185	0.0756118	0.0474836
chr1	19141977	19142077	386077	0	-	0.43	(0.408,0.44]	chr1	45859	2	SS3_PROX	SS3_PROX:INTRON	UBR4	ENSG00000127481.15	ENST00000375254.8:ENST00000425413.5:ENST00000417040.1	protein_coding	protein_coding	protein_coding	protein_coding	6	113	2	1.97721	2.89407	3.81093	0.0121661	9.03544e-6	0.0910127	0.00216015
chr1	176116323	176116423	590794	0	-	0.34	(0.32,0.35]	chr1	70921	3	SS5_PROX	SS5_PROX:INTRON	COP1	ENSG00000143207.21	ENST00000367669.8:ENST00000367667.5:ENST00000367666.5:ENST00000649803.1:ENST00000308769.12:ENST00000459744.5:ENST00000498306.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	70	2	2.1362	2.894035	3.65187	0.0291083	5.49434e-4	0.128029	0.0213049
chrX	136880096	136880196	7897693	0	-	0.45	(0.44,0.476]	chrX	804188	1	SS5_PROX	SS5_PROX:INTRON	RBMX	ENSG00000147274.14	ENST00000431446.7:ENST00000568578.5:ENST00000464781.5:ENST00000320676.11:ENST00000562646.5:ENST00000565438.1:ENST00000567262.5:ENST00000563370.1:ENST00000565907.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	91	2	1.49356	2.8940099999999997	4.29446	0.0537505	2.62765e-5	0.180803	0.0042413
chr1	28937659	28937759	59187	0	+	0.37	(0.35,0.378]	chr1	7621	225	INTRON	INTRON	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000647918.1:ENST00000646800.1:ENST00000644342.1:ENST00000646189.1:ENST00000482464.6:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000646260.1:ENST00000373798.5:ENST00000644600.1:ENST00000649674.1:ENST00000643173.1:ENST00000343067.9:ENST00000644780.1:ENST00000650265.1:ENST00000648181.1:ENST00000643604.1:ENST00000648891.1:ENST00000373797.2:ENST00000349460.9:ENST00000645184.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	49	2	2.47065	2.894005	3.31736	0.0386172	0.00211072	0.142656	0.0425419
chr20	35626853	35626926	7335377	0	-	0.561644	(0.515,0.57]	chr20	747237	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CPNE1	ENSG00000214078.13	ENST00000352393.8:ENST00000397443.7:ENST00000317677.9:ENST00000415920.5:ENST00000498814.1:ENST00000473373.1:ENST00000483359.5:ENST00000397442.5:ENST00000483495.5:ENST00000401607.6:ENST00000437340.5:ENST00000498056.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	32	2	1.49871	2.89396	4.28921	0.0770828	0.00990051	0.196285	0.0877296
chr16	30241819	30241917	6472524	0	-	0.397959	(0.378,0.408]	chr16	625558	12	INTRON	INTRON	NPIPB13	ENSG00000198064.14	ENST00000520915.5:ENST00000568053.5:ENST00000564502.1:ENST00000564219.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	83	2	2.76893	2.893895	3.01886	0.00316735	7.99379e-4	0.0503085	0.0258804
chr2	70697093	70697192	1153602	0	-	0.575758	(0.57,1]	chr2	123272	3	INTRON	INTRON	ADD2	ENSG00000075340.23	ENST00000403045.6:ENST00000264436.9:ENST00000407644.6:ENST00000355733.7:ENST00000522886.5:ENST00000456320.7:ENST00000413157.6:ENST00000430656.5:ENST00000415348.5:ENST00000425976.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	58	2	2.53502	2.89376	3.2525	6.60462e-4	1.55446e-4	0.023462	0.0106835
chr19	15368966	15369066	7147596	0	-	0.58	(0.57,1]	chr19	722013	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	AKAP8	ENSG00000105127.10	ENST00000269701.7:ENST00000680461.1:ENST00000681812.1:ENST00000680336.1:ENST00000680245.1:ENST00000681018.1:ENST00000679798.1:ENST00000598597.7:ENST00000599883.2:ENST00000537303.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	95	2	2.12459	2.8936900000000003	3.66279	7.52872e-4	9.74618e-7	0.0251179	5.60418e-4
chr14	23096583	23096676	5656669	0	+	0.634409	(0.57,1]	chr14	539404	6	INTRON	INTRON	C14orf119	ENSG00000179933.6	ENST00000319074.6:ENST00000554203.1	protein_coding	protein_coding	protein_coding	protein_coding	2	27	2	2.36411	2.89367	3.42323	0.0408868	8.58388e-4	0.161534	0.0267428
chr2	32400264	32400364	731214	0	+	0.23	[0,0.28]	chr2	84304	43	INTRON	INTRON	BIRC6	ENSG00000115760.15	ENST00000421745.7:ENST00000648282.1:ENST00000466527.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	86	2	2.8486	2.89355	2.9385	0.0142776	0.00254189	0.0963703	0.0465056
chr15	72487699	72487799	6059294	0	+	0.34	(0.32,0.35]	chr15	576852	123	INTRON	INTRON	ARIH1	ENSG00000166233.15	ENST00000379887.9:ENST00000570085.5:ENST00000564062.1:ENST00000567762.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	46	2	1.72405	2.89352	4.06299	0.0559439	0.0275418	0.165463	0.137011
chr19	1626208	1626300	7112847	0	-	0.543478	(0.515,0.57]	chr19	714635	1	INTRON	INTRON	TCF3	ENSG00000071564.17	ENST00000344749.9:ENST00000611869.5:ENST00000262965.12:ENST00000588136.7:ENST00000453954.6:ENST00000395423.7:ENST00000587235.6	protein_coding	protein_coding	protein_coding	protein_coding	6	94	2	2.261	2.89345	3.5259	0.00333544	4.10167e-5	0.0512081	0.00519615
chr17	20116735	20116834	6572868	0	+	0.373737	(0.35,0.378]	chr17	639091	58	INTRON	INTRON	SPECC1	ENSG00000128487.19	ENST00000677148.1:ENST00000679048.1:ENST00000678019.1:ENST00000678315.1:ENST00000678321.1:ENST00000676570.1:ENST00000678651.1:ENST00000679049.1:ENST00000472876.5:ENST00000467722.3:ENST00000583528.6:ENST00000680019.1:ENST00000395527.9:ENST00000681593.1:ENST00000680830.1:ENST00000680124.1:ENST00000583482.7:ENST00000679255.1:ENST00000681202.1:ENST00000677914.1:ENST00000578321.2:ENST00000680374.1:ENST00000583463.6:ENST00000681564.1:ENST00000681116.1:ENST00000681875.1:ENST00000680604.1:ENST00000680572.1:ENST00000679058.1:ENST00000395529.7:ENST00000261503.9:ENST00000581973.7:ENST00000580934.2:ENST00000680740.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	49	2	2.79643	2.893435	2.99044	0.013543	0.00894806	0.101363	0.0799922
chr17	38727096	38727196	6606187	0	+	0.29	(0.28,0.32]	chr17	643126	16	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	MLLT6	ENSG00000275023.5	ENST00000621332.5:ENST00000619356.1:ENST00000615741.1:ENST00000615441.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	122	2	2.81789	2.893395	2.9689	0.00194987	7.16126e-4	0.0400465	0.0244108
chr9	112327545	112327645	4317900	0	-	0.31	(0.28,0.32]	chr9	397079	293	INTRON	INTRON	PTBP3	ENSG00000119314.16	ENST00000334318.10:ENST00000458258.5:ENST00000374257.6:ENST00000374255.6:ENST00000343327.6:ENST00000487997.1:ENST00000210227.4:ENST00000450374.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	122	2	2.81789	2.893395	2.9689	0.00194987	7.16126e-4	0.0400465	0.0244108
chr8	26350498	26350598	3716692	0	+	0.44	(0.408,0.44]	chr8	345397	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	PPP2R2A	ENSG00000221914.11	ENST00000380737.8:ENST00000520329.5:ENST00000518254.5:ENST00000524169.5:ENST00000518397.5:ENST00000522535.5:ENST00000665949.1:ENST00000521095.5:ENST00000660435.1:ENST00000523925.5:ENST00000524099.5:ENST00000315985.7:ENST00000519636.5:ENST00000522482.5:ENST00000521557.5:ENST00000519439.5:ENST00000521484.5:ENST00000523964.5:ENST00000667651.1:ENST00000657943.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	85	2	2.58565	2.892995	3.20034	0.00398025	6.66092e-4	0.0549214	0.0233804
chr13	50048294	50048393	5594250	0	-	0.252525	[0,0.28]	chr13	534694	27	INTRON	INTRON	DLEU2	ENSG00000231607.14	ENST00000621282.4:ENST00000688690.1:ENST00000668305.1:ENST00000425586.5:ENST00000686946.1:ENST00000458725.7:ENST00000692504.1:ENST00000443587.6:ENST00000686700.1:ENST00000691340.1:ENST00000433070.7:ENST00000659339.1	lncRNA	lncRNA	lncRNA	lncRNA	2	67	2	2.57033	2.89288	3.21543	0.0305273	0.00629013	0.143385	0.0687434
chr17	64517427	64517526	6662004	0	+	0.212121	[0,0.28]	chr17	650211	2	INTRON	INTRON	CEP95	ENSG00000258890.8	ENST00000579860.5:ENST00000580188.1:ENST00000556440.7:ENST00000553956.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	141	2	2.57945	2.8928700000000003	3.20629	0.00391039	5.56536e-4	0.0547569	0.0214853
chr7	152287975	152288075	3679802	0	-	0.32	(0.28,0.32]	chr7	341623	12	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000684262.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	105	2	1.70122	2.892735	4.08425	0.0356118	8.04923e-5	0.138061	0.00749036
chr19	58188041	58188141	7106253	0	+	0.35	(0.32,0.35]	chr19	713269	6	INTRON	INTRON	ZNF274	ENSG00000171606.18	ENST00000424679.6:ENST00000617501.5:ENST00000621145.4:ENST00000345813.7:ENST00000619307.4:ENST00000615675.4:ENST00000326804.8:ENST00000610905.4:ENST00000594839.5:ENST00000601995.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	95	2	2.29914	2.89267	3.4862	0.00307433	0.001711	0.0510029	0.037419
chr20	437226	437323	7302968	0	-	0.484536	(0.476,0.515]	chr20	743433	19	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	TBC1D20	ENSG00000125875.15	ENST00000680792.1:ENST00000354200.5:ENST00000461304.5:ENST00000681539.1:ENST00000679741.1:ENST00000680990.1:ENST00000681129.1:ENST00000681414.1:ENST00000681441.1:ENST00000680088.1:ENST00000680284.1:ENST00000681777.1:ENST00000681389.1:ENST00000679895.1:ENST00000680491.1:ENST00000679451.1:ENST00000679953.1:ENST00000461188.6:ENST00000680815.1:ENST00000680521.1:ENST00000681193.1:ENST00000681551.1:ENST00000679973.1:ENST00000680911.1:ENST00000679944.1:ENST00000681636.1:ENST00000680106.1:ENST00000494633.1:ENST00000680050.1:ENST00000681742.1:ENST00000680515.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	71	2	2.45107	2.892615	3.33416	0.00301722	0.00230489	0.0507519	0.0428247
chr7	10580468	10580568	3482584	0	-	0.5	(0.476,0.515]	chr7	325772	185	INTRON	INTRON	MGC4859	ENSG00000283117.1	ENST00000634803.1	lncRNA	lncRNA	lncRNA	lncRNA	4	71	2	2.45107	2.892615	3.33416	0.00301722	0.00230489	0.0507519	0.0428247
chr1	160301155	160301254	571876	0	-	0.292929	(0.28,0.32]	chr1	69300	15	INTRON	INTRON	COPA	ENSG00000122218.17	ENST00000241704.8:ENST00000696204.1:ENST00000696203.1:ENST00000696202.1:ENST00000649963.1:ENST00000696208.1:ENST00000696207.1:ENST00000696206.1:ENST00000649676.1:ENST00000368069.7:ENST00000647693.1:ENST00000649787.1:ENST00000650154.1:ENST00000647799.1:ENST00000648805.1:ENST00000647683.1:ENST00000649231.1:ENST00000648501.1:ENST00000696209.1:ENST00000696210.1:ENST00000696211.1:ENST00000647899.1:ENST00000648632.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	76	2	2.87382	2.89253	2.91124	0.014868	0.00165124	0.0989021	0.0375241
chr1	84644391	84644489	496291	0	-	0.357143	(0.35,0.378]	chr1	58810	8	UTR3	UTR3:EXON_MRNA	SSX2IP	ENSG00000117155.17	ENST00000342203.8:ENST00000437941.6	protein_coding	protein_coding	protein_coding	protein_coding	2	51	2	2.57049	2.892525	3.21456	0.0262669	0.00420814	0.133676	0.0572185
chr7	22694302	22694402	3500322	0	-	0.33	(0.32,0.35]	chr7	326683	289	INTRON	INTRON	STEAP1B	ENSG00000105889.16	ENST00000650428.1	protein_coding	processed_transcript	protein_coding	processed_transcript	3	69	2	2.54408	2.892475	3.24087	0.00659077	0.00420518	0.0737338	0.0572185
chr19	28422793	28422892	7165370	0	-	0.424242	(0.408,0.44]	chr19	724146	25	INTRON	INTRON	ENSG00000260725	ENSG00000260725.1	ENST00000567877.1	lncRNA	lncRNA	lncRNA	lncRNA	12	201	2	2.29461	2.892465	3.49032	5.0614e-4	9.97095e-6	0.020816	0.00229529
chr1	45605416	45605516	93420	0	+	0.38	(0.378,0.408]	chr1	12598	4	SS5_PROX	SS5_PROX:INTRON	NASP	ENSG00000132780.17	ENST00000437901.6:ENST00000537798.5:ENST00000437362.6:ENST00000350030.8:ENST00000464190.6:ENST00000527359.5:ENST00000528084.5:ENST00000453748.5:ENST00000525515.5:ENST00000527470.5:ENST00000529333.5:ENST00000528238.5:ENST00000534101.1:ENST00000470768.5:ENST00000372052.8:ENST00000351223.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	86	2	1.95026	2.892365	3.83447	0.0138007	1.86403e-4	0.095051	0.0119078
chr11	67143871	67143970	4812693	0	+	0.484848	(0.476,0.515]	chr11	448112	1	INTRON	INTRON	KDM2A	ENSG00000173120.15	ENST00000529006.7:ENST00000398645.6:ENST00000532436.5:ENST00000527157.1:ENST00000308783.9	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	45	2	2.48527	2.89233	3.29939	0.03496	0.00211868	0.13747500000000001	0.0425644
chr19	11106185	11106270	7016986	0	+	0.494118	(0.476,0.515]	chr19	697440	2	SS3_PROX	SS3_PROX:INTRON	LDLR	ENSG00000130164.14	ENST00000557933.5:ENST00000558518.6:ENST00000545707.5:ENST00000535915.5:ENST00000455727.6:ENST00000558013.5:ENST00000252444.9:ENST00000560467.1	protein_coding	protein_coding	protein_coding	protein_coding	14	187	2	1.70301	2.89227	4.08153	0.00534437	1.53345e-6	0.0642319	7.41369e-4
chr7	43720238	43720338	3526286	0	-	0.36	(0.35,0.378]	chr7	328785	84	INTRON	INTRON	COA1	ENSG00000106603.20	ENST00000415076.6:ENST00000446330.6:ENST00000446564.5:ENST00000438444.5:ENST00000223336.11:ENST00000310564.10:ENST00000415798.5:ENST00000431651.5:ENST00000451651.5:ENST00000418140.5:ENST00000448704.5:ENST00000470156.1:ENST00000457939.1:ENST00000420441.1:ENST00000478504.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	140	2	2.54522	2.8922600000000003	3.2393	7.31866e-4	2.86552e-4	0.0248739	0.0150568
chr5	65933500	65933600	2370913	0	+	0.44	(0.408,0.44]	chr5	228472	63	INTRON	INTRON	ERBIN	ENSG00000112851.15	ENST00000380943.6:ENST00000507490.1:ENST00000416865.6:ENST00000380935.5:ENST00000284037.10:ENST00000380938.6:ENST00000511297.5:ENST00000506030.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	61	2	2.33431	2.8922499999999998	3.45019	0.0129219	0.00152664	0.0990564	0.0353936
chr16	71774058	71774149	6514125	0	-	0.43956	(0.408,0.44]	chr16	631195	2	SS5_PROX	SS5_PROX:INTRON	AP1G1	ENSG00000166747.13	ENST00000299980.9:ENST00000569748.5:ENST00000393512.7:ENST00000565009.5:ENST00000568327.5:ENST00000450149.6:ENST00000563259.5:ENST00000563104.5:ENST00000569185.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	47	2	2.27698	2.892145	3.50731	0.0583528	8.5918e-4	0.167723	0.0265787
chr6	37859994	37860094	2857435	0	+	0.43	(0.408,0.44]	chr6	270225	396	INTRON	INTRON	ZFAND3	ENSG00000156639.12	ENST00000287218.9:ENST00000373391.6:ENST00000474522.5	protein_coding	protein_coding	protein_coding	protein_coding	2	47	2	2.27698	2.892145	3.50731	0.0583528	8.5918e-4	0.167723	0.0265787
chr3	196286975	196287075	1898307	0	-	0.4	(0.378,0.408]	chr3	190066	4	SS5_PROX	SS5_PROX:INTRON	PCYT1A	ENSG00000161217.12	ENST00000441879.5:ENST00000431016.6:ENST00000292823.6:ENST00000411591.5:ENST00000473978.5:ENST00000460677.5:ENST00000444822.5:ENST00000412869.5:ENST00000438634.5:ENST00000491544.1:ENST00000443555.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	46	2	2.72993	2.89193	3.05393	0.0188736	0.00551532	0.108861	0.0672816
chr19	19190884	19190983	7154190	0	-	0.373737	(0.35,0.378]	chr19	723175	35	INTRON	INTRON	BORCS8	ENSG00000254901.8	ENST00000488252.6:ENST00000462790.8:ENST00000585679.1:ENST00000494489.6:ENST00000477565.3:ENST00000462498.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	87	2	2.76353	2.8918999999999997	3.02027	0.00343059	8.40802e-4	0.0517761	0.0263691
chr9	112164872	112164972	4316678	0	-	0.51	(0.476,0.515]	chr9	396993	69	INTRON	INTRON	SUSD1	ENSG00000106868.17	ENST00000374270.8:ENST00000374263.7:ENST00000355396.7:ENST00000374264.6	protein_coding	protein_coding	protein_coding	protein_coding	2	45	2	2.73205	2.891785	3.05152	0.0159328	0.0064848	0.109464	0.0699952
chr9	34047627	34047727	4245839	0	-	0.39	(0.378,0.408]	chr9	390499	144	INTRON	INTRON	UBAP2	ENSG00000137073.24	ENST00000379238.7:ENST00000683659.1:ENST00000682239.1:ENST00000683140.1:ENST00000682209.1:ENST00000681980.1:ENST00000360802.6:ENST00000683252.1:ENST00000684158.1:ENST00000682914.1:ENST00000683717.1:ENST00000379239.9:ENST00000683084.1:ENST00000684754.1:ENST00000629575.2:ENST00000684298.1:ENST00000480885.5:ENST00000459988.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	87	2	1.84831	2.8917699999999997	3.93523	0.0172621	1.93873e-4	0.111749	0.0127226
chr10	118683648	118683747	4703692	0	-	0.414141	(0.408,0.44]	chr10	433843	74	UTR3	UTR3:EXON_MRNA:INTRON	CACUL1	ENSG00000151893.15	ENST00000544392.5:ENST00000369151.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	134	2	2.63748	2.89176	3.14604	5.0683e-4	1.41022e-4	0.0202328	0.010812
chr17	64532116	64532211	6662169	0	+	0.4	(0.378,0.408]	chr17	650273	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	CEP95	ENSG00000258890.8	ENST00000556440.7:ENST00000553956.6:ENST00000579637.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	139	2	2.14821	2.89175	3.63529	0.00200048	5.54165e-5	0.0412555	0.00651834
chr7	97150516	97150616	3357289	0	+	0.38	(0.378,0.408]	chr7	313218	73	INTRON	INTRON	SDHAF3	ENSG00000196636.8	ENST00000432641.3:ENST00000360382.4:ENST00000479853.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	104	2	2.17179	2.891685	3.61158	0.00178023	8.34292e-4	0.039274	0.0266389
chr3	141545589	141545689	1525234	0	+	0.47	(0.44,0.476]	chr3	158846	46	INTRON	INTRON	RASA2	ENSG00000155903.14	ENST00000286364.9	protein_coding	protein_coding	protein_coding	protein_coding	3	60	2	2.39003	2.891625	3.39322	0.0106488	0.00187283	0.0915714	0.0390476
chr1	1840182	1840281	362332	0	-	0.484848	(0.476,0.515]	chr1	42311	1	INTRON	INTRON	GNB1	ENSG00000078369.18	ENST00000610897.4:ENST00000615252.4:ENST00000378609.9:ENST00000439272.6:ENST00000434686.6:ENST00000472614.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	59	2	2.53671	2.8913349999999998	3.24596	0.00624027	0.00322919	0.0718843	0.0507087
chr16	67779373	67779473	6505411	0	-	0.37	(0.35,0.378]	chr16	629654	69	INTRON	INTRON	RANBP10	ENSG00000141084.12	ENST00000317506.8:ENST00000448631.6:ENST00000602506.5:ENST00000602677.5:ENST00000602525.5:ENST00000602638.5:ENST00000602815.5:ENST00000602887.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	90	2	1.78162	2.891295	4.00097	0.0251606	8.64759e-5	0.12011	0.00783027
chr16	3677297	3677397	6434063	0	-	0.48	(0.476,0.515]	chr16	619331	4	SS5_PROX	SS5_PROX:INTRON	TRAP1	ENSG00000126602.11	ENST00000246957.10:ENST00000538171.5:ENST00000575671.5:ENST00000573872.5:ENST00000576335.5:ENST00000574175.1:ENST00000575854.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	131	2	2.65814	2.89121	3.12428	6.21095e-4	9.82343e-5	0.0229151	0.0083372
chr21	10467259	10467358	7368672	0	+	0.272727	[0,0.28]	chr21	751997	19	INTRON	INTRON	BAGE2	ENSG00000187172.15	ENST00000470054.5:ENST00000496773.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	2	63	2	2.64309	2.891175	3.13926	0.0308646	0.00563224	0.13151	0.0678837
chr6	47528806	47528906	2874076	0	+	0.28	[0,0.28]	chr6	272731	250	INTRON	INTRON	CD2AP	ENSG00000198087.7	ENST00000359314.5	protein_coding	protein_coding	protein_coding	protein_coding	2	63	2	2.64309	2.891175	3.13926	0.0308646	0.00563224	0.13151	0.0678837
chr4	77072393	77072492	2165913	0	-	0.40404	(0.378,0.408]	chr4	213634	56	INTRON	INTRON	CCNI	ENSG00000118816.11	ENST00000237654.9:ENST00000511943.5:ENST00000505609.5:ENST00000513774.1:ENST00000507788.2:ENST00000515790.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	120	2	2.59025	2.89116	3.19207	0.00217503	6.80984e-5	0.0417893	0.00684369
chr19	32610465	32610565	7168947	0	-	0.44	(0.408,0.44]	chr19	724362	21	INTRON	INTRON	ANKRD27	ENSG00000105186.16	ENST00000306065.9	protein_coding	protein_coding	protein_coding	protein_coding	5	97	2	2.60785	2.89114	3.17443	0.00146754	5.19132e-4	0.035104	0.0209322
chr9	136836845	136836945	4222043	0	+	0.6	(0.57,1]	chr9	387713	11	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	RABL6	ENSG00000196642.19	ENST00000311502.12:ENST00000484471.6:ENST00000371663.10:ENST00000357466.6:ENST00000464941.5:ENST00000629216.2:ENST00000466096.5:ENST00000461992.1:ENST00000435930.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	87	2	2.19183	2.8910799999999997	3.59033	3.43489e-4	1.72589e-5	0.0172361	0.00315885
chr15	88631585	88631684	6094545	0	+	0.424242	(0.408,0.44]	chr15	579949	14	UTR3	UTR3:EXON_MRNA	AEN	ENSG00000181026.15	ENST00000332810.4:ENST00000557927.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	47	2	2.58179	2.891065	3.20034	0.024638	0.00398025	0.131869	0.0549214
chr21	14516000	14516098	7427898	0	-	0.357143	(0.35,0.378]	chr21	757750	31	INTRON	INTRON	SAMSN1	ENSG00000155307.19	ENST00000647101.1:ENST00000644288.1:ENST00000400564.5:ENST00000400566.6:ENST00000285670.7:ENST00000619120.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	15	295	2	2.36584	2.89106	3.41628	4.35851e-4	8.68931e-7	0.0191798	5.28746e-4
chr15	44558811	44558905	6015611	0	+	0.351064	(0.35,0.378]	chr15	573036	2	EXON_LNCRNA	EXON_LNCRNA:INTRON	EIF3J:ENSG00000259659	ENSG00000104131.13:ENSG00000259659.1	ENST00000424492.7:ENST00000261868.10:ENST00000535391.5:ENST00000536248.1:ENST00000558353.1:ENST00000558006.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:nonsense_mediated_decay:lncRNA	2	52	2	2.48657	2.890935	3.2953	0.032907	0.0031465	0.145164	0.0500431
chr5	54256402	54256502	2620376	0	-	0.32	(0.28,0.32]	chr5	248860	841	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2:ENST00000505630.5:ENST00000505383.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	76	2	2.09794	2.89074	3.68354	0.0340483	5.5135e-4	0.134863	0.0213455
chr19	57848390	57848488	7106015	0	+	0.387755	(0.378,0.408]	chr19	713221	23	INTRON	INTRON	ENSG00000268750	ENSG00000268750.7	ENST00000597134.5:ENST00000596498.2:ENST00000593873.6:ENST00000603271.1:ENST00000598031.1:ENST00000604231.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	46	2	2.66785	2.8907249999999998	3.1136	0.0224639	0.00443339	0.11692	0.061054
chr7	117049661	117049761	3386954	0	+	0.4	(0.378,0.408]	chr7	317151	263	INTRON	INTRON	ST7:ST7-OT4	ENSG00000004866.22:ENSG00000214188.9	ENST00000393446.6:ENST00000265437.9:ENST00000393451.7:ENST00000438863.5:ENST00000393449.5:ENST00000443979.5:ENST00000323984.8:ENST00000417919.5:ENST00000446490.5:ENST00000471110.5:ENST00000422922.5:ENST00000432298.5:ENST00000449366.5:ENST00000487459.5:ENST00000393443.5:ENST00000467538.5:ENST00000434836.5:ENST00000465133.5:ENST00000477742.5:ENST00000462544.1:ENST00000393444.7:ENST00000393447.8	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:nonsense_mediated_decay:lncRNA:processed_transcript	2	46	2	2.66785	2.8907249999999998	3.1136	0.0224639	0.00443339	0.11692	0.061054
chr4	10103197	10103296	2107289	0	-	0.454545	(0.44,0.476]	chr4	208480	37	INTRON	INTRON	WDR1	ENSG00000071127.17	ENST00000499869.7:ENST00000382451.6:ENST00000382452.6:ENST00000502702.5:ENST00000508079.1:ENST00000264785.11:ENST00000505851.5:ENST00000514319.5:ENST00000515018.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	73	2	2.32184	2.8907049999999996	3.45957	0.00609071	0.00106385	0.0676501	0.0300133
chr17	44497739	44497839	6780784	0	-	0.49	(0.476,0.515]	chr17	668697	225	INTRON	INTRON	GPATCH8	ENSG00000186566.13	ENST00000591680.6:ENST00000587228.5:ENST00000585614.1:ENST00000590041.5:ENST00000592746.5:ENST00000586037.5:ENST00000592154.1:ENST00000588554.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	73	2	2.38129	2.89066	3.40003	0.00474233	0.00139193	0.0600445	0.0341261
chr21	38025715	38025815	7463138	0	-	0.59	(0.57,1]	chr21	760277	152	INTRON	INTRON	DSCR4	ENSG00000184029.9	ENST00000398948.5	lncRNA	lncRNA	lncRNA	lncRNA	5	46	2	1.71424	2.89062	4.067	0.0279017	2.30559e-5	0.137011	0.00391568
chr4	110156482	110156582	2227313	0	-	0.48	(0.476,0.515]	chr4	218024	505	INTRON	INTRON	ELOVL6	ENSG00000170522.10	ENST00000394607.7:ENST00000302274.8:ENST00000514184.5:ENST00000506625.5:ENST00000506461.1:ENST00000503885.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	112	2	2.6376	2.890615	3.14363	6.87765e-4	4.25082e-4	0.0240091	0.018441
chr8	55981273	55981373	3755363	0	+	0.39	(0.378,0.408]	chr8	349311	111	INTRON	INTRON	LYN	ENSG00000254087.8	ENST00000519728.6:ENST00000520220.6:ENST00000420292.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	46	2	2.78946	2.89058	2.9917	0.0158859	0.0068789	0.101453	0.0749442
chrX	73852523	73852623	7838049	0	-	0.3	(0.28,0.32]	chrX	799611	152	EXON_LNCRNA	EXON_LNCRNA	XIST	ENSG00000229807.13	ENST00000429829.6	lncRNA	lncRNA	lncRNA	lncRNA	13	300	2	2.87831	2.89056	2.90281	1.94359e-4	2.18538e-5	0.0127418	0.00364152
chr12	131931114	131931214	5250020	0	+	0.41	(0.408,0.44]	chr12	499249	2	SS3_PROX	SS3_PROX:INTRON	PUS1	ENSG00000177192.14	ENST00000443358.6:ENST00000322060.9:ENST00000376649.8:ENST00000542167.2:ENST00000538037.5:ENST00000544662.1:ENST00000456665.6:ENST00000544213.5:ENST00000535067.5:ENST00000537484.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	65	2	2.88913	2.89053	2.89193	0.00950364	0.00185044	0.0863579	0.0388609
chr1	111168461	111168560	184014	0	+	0.484848	(0.476,0.515]	chr1	20432	68	INTRON	INTRON	CEPT1	ENSG00000134255.15	ENST00000545121.5:ENST00000498239.5:ENST00000357172.9:ENST00000460443.5:ENST00000478042.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	109	2	2.3399	2.890465	3.44103	0.00275491	8.64735e-5	0.0469265	0.00783027
chr11	95803662	95803761	4853664	0	+	0.363636	(0.35,0.378]	chr11	452698	39	INTRON	INTRON	CEP57	ENSG00000166037.11	ENST00000537677.5:ENST00000325486.9:ENST00000325542.10:ENST00000538095.1:ENST00000544522.5:ENST00000539855.5:ENST00000541365.5:ENST00000535497.1:ENST00000540830.5:ENST00000538658.5:ENST00000541150.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	65	2	2.28125	2.89046	3.49967	0.0182271	9.80974e-4	0.107842	0.0287765
chr9	120823896	120823993	4335557	0	-	0.360825	(0.35,0.378]	chr9	398286	21	INTRON	INTRON	PSMD5	ENSG00000095261.14	ENST00000373920.6:ENST00000210313.8:ENST00000373904.5	protein_coding	protein_coding	protein_coding	protein_coding	4	78	2	2.56634	2.89045	3.21456	0.00420814	0.00190773	0.0572185	0.0403772
chrX	73968086	73968184	7682339	0	+	0.255102	[0,0.28]	chrX	786637	17	EXON_LNCRNA	EXON_LNCRNA:INTRON	JPX	ENSG00000225470.8	ENST00000664637.1:ENST00000639185.1:ENST00000655090.1:ENST00000640437.1:ENST00000660546.1:ENST00000667886.1:ENST00000660840.1:ENST00000657179.1:ENST00000670506.1:ENST00000657910.1:ENST00000662120.1:ENST00000671207.1:ENST00000659254.1:ENST00000656624.1:ENST00000667573.1:ENST00000660856.1:ENST00000660836.1:ENST00000668590.1:ENST00000658649.1:ENST00000414209.6:ENST00000654137.1:ENST00000670994.1:ENST00000653479.1:ENST00000602772.5:ENST00000655879.1:ENST00000657372.1:ENST00000657096.1:ENST00000602985.6:ENST00000670685.1:ENST00000670503.1:ENST00000663027.1:ENST00000654995.1:ENST00000602895.6:ENST00000654374.1:ENST00000660087.1:ENST00000665032.1:ENST00000671336.1:ENST00000671476.1:ENST00000667057.1:ENST00000670192.1:ENST00000670464.1:ENST00000665345.1:ENST00000661546.1:ENST00000662543.1:ENST00000602938.6:ENST00000664295.1:ENST00000654005.1:ENST00000669149.1:ENST00000659852.1:ENST00000656509.1:ENST00000602294.6:ENST00000667294.1:ENST00000663470.1:ENST00000602920.6:ENST00000671021.1:ENST00000659849.1:ENST00000667937.1:ENST00000661130.1:ENST00000654196.1:ENST00000655994.1:ENST00000659373.1:ENST00000662239.1:ENST00000670805.1:ENST00000656263.1:ENST00000653069.1:ENST00000657638.1:ENST00000653808.1:ENST00000653929.1:ENST00000653885.1:ENST00000659023.1:ENST00000602546.5:ENST00000659622.1:ENST00000671518.1:ENST00000670408.1	lncRNA	lncRNA	lncRNA	lncRNA	3	85	2	2.6632	2.89045	3.1177	0.00849154	0.00515076	0.0778788	0.0650394
chr7	72884062	72884162	3329836	0	+	0.46	(0.44,0.476]	chr7	309555	38	INTRON	INTRON	POM121	ENSG00000196313.13	ENST00000627934.3:ENST00000395270.5	protein_coding	protein_coding	protein_coding	protein_coding	6	109	2	2.55734	2.8904199999999998	3.2235	7.72402e-4	3.98783e-4	0.0255867	0.0185763
chr17	67365135	67365232	6826133	0	-	0.371134	(0.35,0.378]	chr17	674633	19	INTRON	INTRON	PSMD12	ENSG00000197170.10	ENST00000356126.8:ENST00000357146.4:ENST00000584008.5:ENST00000584289.5:ENST00000581618.1:ENST00000579365.5:ENST00000578015.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	175	2	2.30934	2.8903499999999998	3.47136	0.00143433	1.38553e-5	0.0340925	0.00277706
chr19	57283159	57283258	7103556	0	+	0.474747	(0.44,0.476]	chr19	712850	8	INTRON	INTRON	ZNF460	ENSG00000197714.9	ENST00000537645.5:ENST00000360338.4:ENST00000599602.1	protein_coding	protein_coding	protein_coding	protein_coding	3	37	2	1.55662	2.890275	4.22393	0.0688347	0.0162322	0.184298	0.109464
chr12	116202867	116202967	5424800	0	-	0.31	(0.28,0.32]	chr12	518271	217	INTRON	INTRON	MED13L	ENSG00000123066.9	ENST00000281928.9:ENST00000650226.1:ENST00000548743.2:ENST00000647567.1:ENST00000551197.2	protein_coding	protein_coding	protein_coding	protein_coding	2	56	2	2.51488	2.890195	3.26551	0.0380957	0.0030714	0.141678	0.0509893
chr1	116542214	116542313	529055	0	-	0.50505	(0.476,0.515]	chr1	62431	56	INTRON	INTRON	CD58	ENSG00000116815.16	ENST00000369489.10:ENST00000464088.5:ENST00000457047.6:ENST00000526981.1:ENST00000369487.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	121	2	2.55638	2.890155	3.22393	3.87508e-4	3.84737e-4	0.0182343	0.0177751
chr17	64501260	64501353	6815820	0	-	0.483871	(0.476,0.515]	chr17	673799	1	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DDX5	ENSG00000108654.16	ENST00000225792.10:ENST00000678890.1:ENST00000676601.1:ENST00000676575.1:ENST00000676969.1:ENST00000678810.1:ENST00000585317.2:ENST00000678110.1:ENST00000580026.6:ENST00000678757.1:ENST00000676581.1:ENST00000676785.1:ENST00000585111.2:ENST00000577922.6:ENST00000450599.7:ENST00000678814.1:ENST00000677726.1:ENST00000583212.2:ENST00000579461.2:ENST00000540698.6:ENST00000581230.5:ENST00000581693.5:ENST00000582326.2:ENST00000578491.2:ENST00000578804.5:ENST00000578758.5:ENST00000581237.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	14	261	2	2.44712	2.89011	3.3331	1.71735e-4	2.83356e-6	0.0113605	0.00119486
chr5	131715279	131715377	2719922	0	-	0.5	(0.476,0.515]	chr5	255702	43	INTRON	INTRON	FNIP1	ENSG00000217128.13	ENST00000510461.6:ENST00000307954.12:ENST00000307968.11:ENST00000511848.1	protein_coding	protein_coding	protein_coding	protein_coding	5	81	2	2.24654	2.89008	3.53362	0.00346427	0.00102391	0.0539802	0.029231300000000002
chr5	134603802	134603901	2727697	0	-	0.272727	[0,0.28]	chr5	256688	28	UTR3	UTR3:EXON_MRNA	SAR1B	ENSG00000152700.14	ENST00000402673.7	protein_coding	protein_coding	protein_coding	protein_coding	2	64	2	2.80396	2.89006	2.97616	0.0161429	0.0128425	0.109464	0.0926667
chr9	131179605	131179704	4216185	0	+	0.575758	(0.57,1]	chr9	386630	8	INTRON	INTRON	NUP214	ENSG00000126883.19	ENST00000695497.1:ENST00000695498.1:ENST00000695496.1:ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000525980.5:ENST00000526346.5:ENST00000531929.5:ENST00000651334.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	12	112	2	2.50856	2.89004	3.27152	9.75169e-5	1.22817e-6	0.0088963	6.45726e-4
chr1	24753717	24753816	46144	0	+	0.40404	(0.378,0.408]	chr1	5764	77	INTRON	INTRON	CLIC4	ENSG00000169504.15	ENST00000488683.1:ENST00000497755.1:ENST00000489758.1:ENST00000374379.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	62	2	2.30628	2.890025	3.47377	0.0163339	0.00103087	0.101571	0.0294094
chr17	81585108	81585208	6849070	0	-	0.41	(0.408,0.44]	chr17	678158	127	INTRON	INTRON	NPLOC4	ENSG00000182446.14	ENST00000331134.11:ENST00000374747.9:ENST00000574897.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	205	2	2.66198	2.890005	3.11803	3.34659e-4	5.55154e-6	0.0169733	0.00163732
chr11	65637346	65637439	4806881	0	+	0.247312	[0,0.28]	chr11	446898	5	UTR3	UTR3:EXON_MRNA	PCNX3	ENSG00000197136.5	ENST00000355703.4	protein_coding	protein_coding	protein_coding	protein_coding	4	107	2	1.95669	2.88997	3.82325	0.0237518	7.47357e-4	0.129075	0.0251179
chr1	29052703	29052803	60351	0	+	0.3	(0.28,0.32]	chr1	7706	2	SS3_PROX	SS3_PROX:INTRON	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000647918.1:ENST00000646800.1:ENST00000644342.1:ENST00000646189.1:ENST00000482464.6:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000646260.1:ENST00000373798.5:ENST00000644600.1:ENST00000649674.1:ENST00000643173.1:ENST00000343067.9:ENST00000644780.1:ENST00000650265.1:ENST00000648181.1:ENST00000643604.1:ENST00000648891.1:ENST00000373797.2:ENST00000349460.9:ENST00000645184.1:ENST00000645111.1:ENST00000643302.1:ENST00000645999.1:ENST00000642643.1:ENST00000636666.1:ENST00000644848.1:ENST00000644470.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	106	2	2.25939	2.889645	3.5199	0.021772	8.86821e-5	0.11491	0.00792076
chr6	75639188	75639288	2905325	0	+	0.27	[0,0.28]	chr6	274513	40	INTRON	INTRON	SENP6	ENSG00000112701.18	ENST00000370010.6:ENST00000447266.7:ENST00000327284.12:ENST00000483859.6:ENST00000424947.6	protein_coding	protein_coding	protein_coding	protein_coding	3	88	2	1.94204	2.889595	3.83715	0.0544139	3.63888e-4	0.164972	0.0170637
chr5	176357273	176357373	2775260	0	-	0.36	(0.35,0.378]	chr5	261339	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	KIAA1191	ENSG00000122203.15	ENST00000393725.6:ENST00000298569.9:ENST00000393728.6:ENST00000614420.4:ENST00000620366.4:ENST00000510164.5:ENST00000533553.5:ENST00000506983.5:ENST00000503082.5:ENST00000504688.5:ENST00000506668.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	144	2	2.77809	2.88959	3.00109	0.00103021	7.42011e-5	0.029231300000000002	0.00718967
chr16	1746436	1746534	6275869	0	+	0.602041	(0.57,1]	chr16	599574	31	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	MAPK8IP3	ENSG00000138834.15	ENST00000685674.1:ENST00000250894.8:ENST00000673691.1:ENST00000356010.9:ENST00000610761.2:ENST00000564098.5:ENST00000561765.1:ENST00000568271.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	55	2	1.49341	2.88952	4.28563	0.0307286	5.27255e-6	0.143385	0.00170345
chr2	10187408	10187508	691378	0	+	0.59	(0.57,1]	chr2	81109	313	INTRON	INTRON	RRM2	ENSG00000171848.16	ENST00000641498.1:ENST00000381786.7	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	6	31	2	1.33537	2.8895150000000003	4.44366	0.0512131	0.00210922	0.157915	0.0425419
chr12	31316076	31316175	5302755	0	-	0.50505	(0.476,0.515]	chr12	504668	106	INTRON	INTRON	SINHCAF	ENSG00000139146.14	ENST00000337682.9:ENST00000539409.5:ENST00000454658.6:ENST00000542983.1:ENST00000539004.5:ENST00000543615.1:ENST00000536836.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	150	2	2.77651	2.88941	3.00231	1.96194e-4	1.66129e-4	0.0122528	0.0118127
chr9	123213748	123213828	4339931	0	-	0.525	(0.515,0.57]	chr9	398956	3	UTR5	UTR5:EXON_MRNA:INTRON	STRBP	ENSG00000165209.19	ENST00000348403.10:ENST00000360998.3:ENST00000407982.6:ENST00000479114.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	125	2	2.5483	2.88941	3.23052	4.26839e-4	4.03858e-5	0.0189958	0.00515782
chr1	212895985	212896084	310229	0	+	0.40404	(0.378,0.408]	chr1	35838	8	UTR3	UTR3:EXON_MRNA	FLVCR1	ENSG00000162769.13	ENST00000366971.9	protein_coding	protein_coding	protein_coding	protein_coding	3	62	2	2.26009	2.889345	3.5186	0.0188651	8.45009e-4	0.108861	0.0263813
chr7	140469592	140469691	3661528	0	-	0.575758	(0.57,1]	chr7	339916	90	INTRON	INTRON	MKRN1	ENSG00000133606.11	ENST00000255977.7:ENST00000475010.5:ENST00000495305.5:ENST00000474576.5:ENST00000480552.5:ENST00000496169.5:ENST00000443720.6:ENST00000471104.5:ENST00000467513.5:ENST00000494939.1:ENST00000498535.1:ENST00000473444.1:ENST00000475180.5:ENST00000481705.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	45	2	1.72406	2.88929	4.05452	0.0261443	2.28989e-5	0.122221	0.00373083
chr17	40236316	40236416	6609634	0	+	0.47	(0.44,0.476]	chr17	643734	154	INTRON	INTRON	WIPF2	ENSG00000171475.14	ENST00000323571.9:ENST00000583268.1:ENST00000494757.5:ENST00000582781.5:ENST00000585043.5:ENST00000394103.7:ENST00000583130.5:ENST00000584296.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	71	2	2.30673	2.889265	3.4718	0.0055175	0.00136358	0.0672816	0.0336321
chr7	116866138	116866238	3385398	0	+	0.38	(0.378,0.408]	chr7	317031	31	INTRON	INTRON	CAPZA2	ENSG00000198898.15	ENST00000464223.5:ENST00000484325.1:ENST00000414148.6:ENST00000361183.8:ENST00000449080.5:ENST00000639546.1:ENST00000426421.5:ENST00000490693.5:ENST00000417431.5:ENST00000461878.5:ENST00000466023.1:ENST00000464669.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	62	2	2.35103	2.889265	3.4275	0.014158	0.00126053	0.0959618	0.03295
chr10	124924867	124924967	4535338	0	+	0.44	(0.408,0.44]	chr10	418562	72	INTRON	INTRON	ENSG00000249456	ENSG00000249456.1	ENST00000508096.1	lncRNA	lncRNA	lncRNA	lncRNA	7	134	2	2.28817	2.889245	3.49032	0.00358507	9.97095e-6	0.0533855	0.00229529
chr9	37184113	37184213	4118296	0	+	0.33	(0.32,0.35]	chr9	375384	240	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000322831.6:ENST00000461038.5:ENST00000488607.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	69	2	2.78706	2.8891549999999997	2.99125	0.00958447	0.00253645	0.0820838	0.0465056
chrX	48917081	48917180	7815681	0	-	0.525253	(0.515,0.57]	chrX	796810	13	INTRON	INTRON	PIM2	ENSG00000102096.9	ENST00000376509.4	protein_coding	protein_coding	protein_coding	protein_coding	12	185	2	2.78218	2.8891400000000003	2.9961	3.00111e-5	2.22133e-5	0.00455026	0.00367645
chr1	168049200	168049299	249635	0	+	0.353535	(0.35,0.378]	chr1	29642	36	INTRON	INTRON	DCAF6	ENSG00000143164.16	ENST00000432587.6:ENST00000367843.7:ENST00000367840.4:ENST00000312263.10:ENST00000489398.1:ENST00000478668.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	65	2	2.36677	2.88908	3.41139	0.0139343	0.00143263	0.0957526	0.0347139
chr15	28601693	28601793	5988032	0	+	0.52	(0.515,0.57]	chr15	569254	10	INTRON	INTRON	HERC2P9	ENSG00000206149.11	ENST00000689985.1:ENST00000688694.1:ENST00000529537.2:ENST00000529624.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	2	39	2	2.74772	2.8890450000000003	3.03037	0.0142192	0.00608732	0.103638	0.0676501
chr5	171409831	171409928	2546800	0	+	0.546392	(0.515,0.57]	chr5	243128	17	INTRON	INTRON	NPM1	ENSG00000181163.14	ENST00000517671.5:ENST00000676613.1:ENST00000678186.1:ENST00000678267.1:ENST00000677297.1:ENST00000521672.6:ENST00000679190.1:ENST00000677467.1:ENST00000678280.1:ENST00000676625.1:ENST00000351986.10:ENST00000676504.1:ENST00000676589.1:ENST00000677357.1:ENST00000296930.10:ENST00000521260.2:ENST00000518587.2:ENST00000678774.1:ENST00000677600.1:ENST00000677741.1:ENST00000677325.1:ENST00000677672.1:ENST00000677907.1:ENST00000677904.1:ENST00000677682.1:ENST00000524204.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	39	2	2.74772	2.8890450000000003	3.03037	0.0142192	0.00608732	0.103638	0.0676501
chr7	100323045	100323143	3586639	0	-	0.55102	(0.515,0.57]	chr7	334335	16	INTRON	INTRON	PMS2P1	ENSG00000078319.11	ENST00000685724.1:ENST00000692351.1:ENST00000685541.1:ENST00000676200.2:ENST00000675162.2:ENST00000686838.1:ENST00000676241.1:ENST00000674981.1:ENST00000691424.1:ENST00000689817.1:ENST00000675610.2:ENST00000685901.1:ENST00000687177.1:ENST00000686797.1:ENST00000686203.1:ENST00000687616.1:ENST00000689267.1:ENST00000691905.1:ENST00000688544.1:ENST00000692261.1:ENST00000693192.1:ENST00000693215.1:ENST00000691707.1:ENST00000691275.1:ENST00000692687.1:ENST00000689609.1:ENST00000685852.1:ENST00000691910.1:ENST00000676204.1:ENST00000689000.1:ENST00000693042.1:ENST00000690446.1:ENST00000676274.2:ENST00000685473.1:ENST00000693010.1:ENST00000687801.1:ENST00000689447.1:ENST00000674842.2:ENST00000688104.1:ENST00000686890.1:ENST00000675639.2:ENST00000693302.1:ENST00000676155.2:ENST00000691428.1:ENST00000691046.1:ENST00000691816.1:ENST00000685670.1:ENST00000693490.1:ENST00000685700.1:ENST00000692947.1:ENST00000689907.1:ENST00000691110.1:ENST00000685499.1:ENST00000689019.1:ENST00000689719.1:ENST00000690988.1:ENST00000676256.1:ENST00000687713.1:ENST00000691247.1:ENST00000685805.1	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript	2	39	2	2.74772	2.8890450000000003	3.03037	0.0142192	0.00608732	0.103638	0.0676501
chr1	220123739	220123839	319082	0	+	0.41	(0.408,0.44]	chr1	36531	89	INTRON	INTRON	IARS2	ENSG00000067704.10	ENST00000366922.3:ENST00000490891.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	60	2	2.82511	2.889035	2.95296	0.00929354	0.00189528	0.0817766	0.0402736
chr6	2966894	2966993	3047685	0	-	0.474747	(0.44,0.476]	chr6	283597	6	UTR5	UTR5:EXON_MRNA:SS3_PROX:INTRON	SERPINB6	ENSG00000124570.21	ENST00000643098.1:ENST00000380546.7:ENST00000380539.7:ENST00000380529.5:ENST00000649845.1:ENST00000644178.1:ENST00000612421.3:ENST00000616722.4:ENST00000642543.1:ENST00000644388.1:ENST00000380520.6:ENST00000645580.1:ENST00000644693.1:ENST00000646775.1:ENST00000645421.1:ENST00000643227.1:ENST00000646688.1:ENST00000644777.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	96	2	2.6062	2.88896	3.17172	0.00148054	5.10693e-4	0.0353633	0.020816
chr16	22470554	22470649	6322282	0	+	0.515789	(0.515,0.57]	chr16	605350	10	INTRON	INTRON	SMG1P1	ENSG00000237296.10	ENST00000381231.5:ENST00000309865.11:ENST00000691423.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	4	70	2	2.43783	2.888955	3.34008	0.00916404	1.23135e-4	0.0812949	0.00949625
chr12	103774969	103775068	5401129	0	-	0.414141	(0.408,0.44]	chr12	515204	28	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	NT5DC3	ENSG00000111696.12	ENST00000447799.5:ENST00000392876.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	174	2	1.6794	2.8888350000000003	4.09827	0.00636336	3.29838e-6	0.0724473	0.00128575
chr7	102476570	102476670	3588490	0	-	0.42	(0.408,0.44]	chr7	334980	3	SS3_PROX	SS3_PROX:INTRON	POLR2J	ENSG00000005075.16	ENST00000292614.10	protein_coding	protein_coding	protein_coding	protein_coding	2	32	2	1.94273	2.8888350000000003	3.83494	0.0456237	0.0411442	0.161534	0.149888
chr8	127997137	127997231	3862101	0	+	0.521277	(0.515,0.57]	chr8	355504	2	EXON_LNCRNA	EXON_LNCRNA:INTRON	PVT1	ENSG00000249859.13	ENST00000667305.1:ENST00000690350.1:ENST00000653522.1:ENST00000661830.1:ENST00000657289.1:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000657211.1:ENST00000653845.1:ENST00000651587.1:ENST00000692980.1:ENST00000654324.1:ENST00000657693.1:ENST00000666080.1:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000662410.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000654091.1:ENST00000657356.1:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000667714.1:ENST00000654105.1:ENST00000660438.1:ENST00000664995.1:ENST00000670714.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000668123.1:ENST00000666776.1:ENST00000659912.1:ENST00000670532.1:ENST00000523068.2:ENST00000671088.1:ENST00000670204.1:ENST00000663461.1:ENST00000513868.6:ENST00000692433.1:ENST00000523190.7:ENST00000685606.1:ENST00000690788.1:ENST00000685634.1:ENST00000653990.1:ENST00000655783.1:ENST00000656411.1:ENST00000664742.1:ENST00000655099.1:ENST00000662709.1:ENST00000512617.7:ENST00000660122.1:ENST00000666452.1:ENST00000659666.1:ENST00000659892.1:ENST00000521600.5:ENST00000522875.5:ENST00000653497.1:ENST00000668098.1:ENST00000659106.1:ENST00000658840.1:ENST00000666147.1	lncRNA	lncRNA	lncRNA	lncRNA	5	85	2	2.87626	2.8886849999999997	2.90111	0.00136224	3.57078e-4	0.0339121	0.0175154
chr6	28364115	28364215	2840174	0	+	0.41	(0.408,0.44]	chr6	266698	3	SS5_PROX	SS5_PROX:INTRON	ZKSCAN3	ENSG00000189298.14	ENST00000252211.7:ENST00000377255.3:ENST00000341464.9	protein_coding	protein_coding	protein_coding	protein_coding	3	61	2	2.57295	2.88866	3.20437	0.00640423	0.00306596	0.0694534	0.0509893
chr2	53957866	53957966	1120447	0	-	0.4	(0.378,0.408]	chr2	120102	82	INTRON	INTRON	PSME4	ENSG00000068878.15	ENST00000404125.6:ENST00000389993.7:ENST00000481518.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	90	2	2.11194	2.88863	3.66532	0.0292534	2.39759e-5	0.128055	0.00383194
chr22	21675914	21676013	7482551	0	+	0.59596	(0.57,1]	chr22	763345	4	INTRON	INTRON	PPIL2	ENSG00000100023.20	ENST00000679795.1:ENST00000679540.1:ENST00000679580.1:ENST00000681286.1:ENST00000680061.1:ENST00000681338.1:ENST00000681956.1:ENST00000679827.1:ENST00000679534.1:ENST00000679479.1:ENST00000680393.1:ENST00000680463.1:ENST00000680426.1:ENST00000335025.12:ENST00000498109.2:ENST00000496819.2:ENST00000398831.8:ENST00000681394.1:ENST00000679477.1:ENST00000626352.2:ENST00000417788.5:ENST00000458567.5:ENST00000681791.1:ENST00000679692.1:ENST00000680962.1:ENST00000679857.1:ENST00000679586.1:ENST00000680094.1:ENST00000484439.5:ENST00000680434.1:ENST00000680109.1:ENST00000406385.1:ENST00000680022.1:ENST00000681137.1:ENST00000680860.1:ENST00000680183.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	33	2	2.88261	2.88862	2.89463	0.00788262	0.00118949	0.076155	0.031662
chr16	89802078	89802175	6544672	0	-	0.494845	(0.476,0.515]	chr16	634579	21	INTRON	INTRON	FANCA	ENSG00000187741.16	ENST00000561667.2:ENST00000389301.8:ENST00000568369.6:ENST00000564475.6:ENST00000696275.1:ENST00000696287.1:ENST00000696286.1:ENST00000696274.1:ENST00000696291.1:ENST00000696276.1:ENST00000567205.2:ENST00000567284.7:ENST00000696277.1:ENST00000696292.1:ENST00000563767.2:ENST00000567621.6:ENST00000696288.1:ENST00000696293.1:ENST00000566889.5:ENST00000389302.7:ENST00000696294.1:ENST00000696295.1:ENST00000563673.5:ENST00000543736.5:ENST00000534992.5:ENST00000565582.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	60	2	2.32001	2.88856	3.45711	0.0136217	0.00140905	0.101682	0.0340865
chr6	116277823	116277922	3197595	0	-	0.565657	(0.515,0.57]	chr6	297825	31	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	TSPYL1	ENSG00000189241.8	ENST00000652202.1:ENST00000368608.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	44	657	2	2.60981	2.88855	3.16729	1.30425e-6	8.89356e-8	6.72761e-4	1.3054e-4
chr16	18106480	18106580	6453698	0	-	0.33	(0.32,0.35]	chr16	621960	1027	INTRON	INTRON	ENSG00000259929:ENSG00000260242	ENSG00000259929.5:ENSG00000260242.1	ENST00000567304.1:ENST00000563866.1	lncRNA	lncRNA	lncRNA	lncRNA	3	70	2	2.84812	2.888525	2.92893	0.0147575	0.00138	0.0983813	0.0341261
chr21	5123283	5123380	7424438	0	-	0.659794	(0.57,1]	chr21	757271	7	INTRON	INTRON	ENSG00000280071	ENSG00000280071.4	ENST00000624810.3:ENST00000625036.3:ENST00000620528.5:ENST00000620015.4:ENST00000624120.3:ENST00000624648.3:ENST00000624748.2:ENST00000623810.2:ENST00000624714.3:ENST00000623390.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	39	2	2.37366	2.888495	3.40333	0.00373392	9.20604e-4	0.0535844	0.0278392
chr2	20275496	20275595	1076014	0	-	0.353535	(0.35,0.378]	chr2	114960	117	INTRON	INTRON	PUM2	ENSG00000055917.16	ENST00000338086.9:ENST00000361078.7:ENST00000440577.5	protein_coding	protein_coding	protein_coding	protein_coding	4	87	2	2.59656	2.8883	3.18004	0.00638551	3.8703e-4	0.0693551	0.0177751
chr1	109369308	109369368	520732	0	-	0.5	(0.476,0.515]	chr1	61190	1	SS5_PROX	SS5_PROX:INTRON	SORT1	ENSG00000134243.12	ENST00000538502.5:ENST00000256637.8:ENST00000493736.5:ENST00000482236.5:ENST00000633956.1:ENST00000483508.5:ENST00000495777.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	59	2	2.72507	2.8882950000000003	3.05152	0.0064848	0.0029369	0.0699952	0.0496505
chr14	23069032	23069120	5842709	0	-	0.477273	(0.476,0.515]	chr14	555606	1	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ACIN1	ENSG00000100813.15	ENST00000605057.6:ENST00000557515.5:ENST00000262710.5:ENST00000457657.5:ENST00000357481.6:ENST00000338631.10:ENST00000473758.5:ENST00000397341.7:ENST00000555053.5:ENST00000555566.1:ENST00000553721.5:ENST00000557432.2:ENST00000555352.2:ENST00000553501.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	17	303	2	2.65678	2.8882950000000003	3.11981	2.22907e-5	6.61573e-6	0.00368183	0.00194394
chr2	174370827	174370927	1271096	0	-	0.5	(0.476,0.515]	chr2	134338	119	INTRON	INTRON	CIR1	ENSG00000138433.16	ENST00000342016.8:ENST00000377973.4	protein_coding	protein_coding	protein_coding	protein_coding	3	59	2	2.72507	2.8882950000000003	3.05152	0.0064848	0.0029369	0.0699952	0.0496505
chr15	28630838	28630938	5988329	0	+	0.5	(0.476,0.515]	chr15	569276	10	INTRON	INTRON	HERC2P9	ENSG00000206149.11	ENST00000689985.1:ENST00000688694.1:ENST00000529537.2:ENST00000529624.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	2	44	2	2.7646	2.8882849999999998	3.01197	0.0162075	0.00633162	0.101453	0.0722266
chr17	66565575	66565675	6664929	0	+	0.51	(0.476,0.515]	chr17	650338	106	INTRON	INTRON	PRKCA	ENSG00000154229.12	ENST00000413366.8:ENST00000578063.5:ENST00000284384.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	44	2	2.7646	2.8882849999999998	3.01197	0.0162075	0.00633162	0.101453	0.0722266
chr21	32685347	32685447	7439633	0	-	0.48	(0.476,0.515]	chr21	759132	2	SS5_PROX	SS5_PROX:INTRON	SYNJ1	ENSG00000159082.18	ENST00000382499.7:ENST00000433931.7:ENST00000382491.7:ENST00000357345.7:ENST00000674351.1:ENST00000674308.1:ENST00000630077.3:ENST00000674204.1:ENST00000429236.5	protein_coding	protein_coding	protein_coding	protein_coding	2	44	2	2.7646	2.8882849999999998	3.01197	0.0162075	0.00633162	0.101453	0.0722266
chr10	125058928	125059028	4713318	0	-	0.52	(0.515,0.57]	chr10	434897	194	INTRON	INTRON	CTBP2	ENSG00000175029.17	ENST00000337195.9:ENST00000411419.6:ENST00000494626.6:ENST00000531469.5:ENST00000460976.5:ENST00000476817.1:ENST00000530884.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	159	2	2.38058	2.88822	3.39586	2.74144e-4	1.37472e-5	0.0151711	0.00276767
chr3	25655347	25655447	1642074	0	-	0.36	(0.35,0.378]	chr3	168598	95	INTRON	INTRON	TOP2B	ENSG00000077097.16	ENST00000264331.9:ENST00000435706.6:ENST00000424225.1	protein_coding	protein_coding	protein_coding	protein_coding	2	48	2	2.72497	2.888165	3.05136	0.0198266	0.00578894	0.109608	0.0684334
chr15	82646721	82646821	6248503	0	-	0.6	(0.57,1]	chr15	596292	3	SS5_PROX	SS5_PROX:INTRON	CPEB1	ENSG00000214575.10	ENST00000684509.1:ENST00000615198.4:ENST00000620182.4:ENST00000617522.4:ENST00000569257.5:ENST00000567678.1:ENST00000566716.1:ENST00000563519.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	33	2	2.28103	2.8880999999999997	3.49517	0.0151554	6.03609e-4	0.108535	0.0226059
chr2	235621015	235621115	1042607	0	+	0.46	(0.44,0.476]	chr2	111222	961	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1:ENST00000402604.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	96	2	2.32184	2.887825	3.45381	0.00609071	7.90762e-5	0.0676501	0.00739361
chr16	70384620	70384718	6510914	0	-	0.5	(0.476,0.515]	chr16	630663	10	INTRON	INTRON	ST3GAL2	ENSG00000157350.13	ENST00000342907.3:ENST00000393640.8:ENST00000567822.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	121	2	2.27014	2.88772	3.5053	0.00172923	9.14136e-5	0.0384338	0.00850096
chr7	884882	884980	3269193	0	+	0.561224	(0.515,0.57]	chr7	303678	6	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	SUN1:GET4	ENSG00000164828.18:ENSG00000239857.7	ENST00000457861.1:ENST00000265857.8:ENST00000412734.6:ENST00000407192.5:ENST00000441491.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	51	2	2.57298	2.88769	3.2024	0.00506495	0.00322022	0.0646039	0.0507087
chr2	186500677	186500772	942962	0	+	0.484211	(0.476,0.515]	chr2	103256	4	SS5_PROX	SS5_PROX:INTRON	ZC3H15	ENSG00000065548.18	ENST00000421536.5:ENST00000337859.11:ENST00000437396.1:ENST00000481101.5:ENST00000468120.5:ENST00000496289.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	63	2	2.63168	2.8876549999999996	3.14363	0.0237106	4.25082e-4	0.118716	0.018441
chr6	5261660	5261760	2792670	0	+	0.56	(0.515,0.57]	chr6	263650	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	FARS2	ENSG00000145982.13	ENST00000324331.10:ENST00000602691.1:ENST00000648580.1:ENST00000274680.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	69	2	2.78208	2.88762	2.99316	0.00209264	9.21623e-4	0.0424943	0.0278396
chr11	70418767	70418863	4821827	0	+	0.458333	(0.44,0.476]	chr11	449634	13	INTRON	INTRON	CTTN	ENSG00000085733.16	ENST00000346329.7:ENST00000301843.13:ENST00000376561.7:ENST00000415461.2:ENST00000532334.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	12	217	2	2.8407	2.8875900000000003	2.93448	7.1393e-5	2.07373e-5	0.00759824	0.00353137
chr7	127729898	127729998	3403189	0	+	0.36	(0.35,0.378]	chr7	318134	81	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000468166.5:ENST00000465900.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	119	2	2.60243	2.8875349999999997	3.17264	6.72784e-4	6.16722e-4	0.023543	0.0229036
chr6	147804029	147804128	2992039	0	+	0.333333	(0.32,0.35]	chr6	280177	666	INTRON	INTRON	ENSG00000227681	ENSG00000227681.5	ENST00000427015.1	lncRNA	lncRNA	lncRNA	lncRNA	4	93	2	2.81262	2.88747	2.96232	0.00311322	0.00118924	0.0498063	0.031662
chr22	49651327	49651426	7602601	0	-	0.515152	(0.476,0.515]	chr22	778594	239	INTRON	INTRON	MIR3667HG	ENSG00000188511.13	ENST00000414287.5:ENST00000416411.1:ENST00000689875.1:ENST00000400023.5:ENST00000405854.5	lncRNA	lncRNA	lncRNA	lncRNA	4	79	2	2.69886	2.887435	3.07601	0.00385209	5.95211e-4	0.0542786	0.0221865
chr1	21726766	21726865	396286	0	-	0.414141	(0.408,0.44]	chr1	47279	3	INTRON	INTRON	USP48	ENSG00000090686.16	ENST00000400301.5:ENST00000308271.14:ENST00000529637.5:ENST00000526044.5:ENST00000534705.5	protein_coding	protein_coding	protein_coding	protein_coding	10	172	2	2.45611	2.88733	3.31855	2.37558e-4	5.49557e-5	0.0136195	0.0065165
chr10	13196928	13197025	4395714	0	+	0.525773	(0.515,0.57]	chr10	405690	13	INTRON	INTRON	MCM10	ENSG00000065328.17	ENST00000378714.8:ENST00000484800.6:ENST00000378694.1:ENST00000481292.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	54	2	2.11313	2.88732	3.66151	0.0256725	4.49566e-4	0.133676	0.0196044
chr11	66750800	66750899	4811403	0	+	0.444444	(0.44,0.476]	chr11	447936	19	INTRON	INTRON	C11orf80	ENSG00000173715.18	ENST00000534325.5:ENST00000524551.5:ENST00000525908.6:ENST00000540737.7:ENST00000527634.5:ENST00000527368.5:ENST00000531400.6:ENST00000642265.1:ENST00000532565.6:ENST00000525449.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	59	2	2.59888	2.8872999999999998	3.17572	0.00487719	0.00427037	0.0640618	0.0573912
chr11	33139481	33139580	4940755	0	-	0.292929	(0.28,0.32]	chr11	462864	29	INTRON	INTRON	CSTF3	ENSG00000176102.13	ENST00000323959.9:ENST00000524827.6:ENST00000526480.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	90	2	2.50602	2.88726	3.2685	0.00432734	0.00290205	0.0579331	0.0494641
chr2	144467330	144467429	1241275	0	-	0.383838	(0.378,0.408]	chr2	131716	26	INTRON	INTRON	ZEB2	ENSG00000169554.23	ENST00000636471.1:ENST00000627532.3:ENST00000638128.1:ENST00000637304.1:ENST00000636179.1:ENST00000636820.1:ENST00000419938.5:ENST00000409487.7:ENST00000636732.2:ENST00000636026.2:ENST00000675069.1:ENST00000689298.1:ENST00000539609.7:ENST00000558170.6:ENST00000303660.8:ENST00000427902.5:ENST00000637267.2:ENST00000392861.6:ENST00000431672.4:ENST00000409211.5:ENST00000465308.5:ENST00000434448.5:ENST00000472146.5:ENST00000461784.3:ENST00000476394.5:ENST00000637591.2:ENST00000479735.1:ENST00000453352.5:ENST00000435831.5:ENST00000444559.5:ENST00000630572.2:ENST00000484313.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	62	2	2.21238	2.8872299999999997	3.56208	0.0218124	6.94246e-4	0.11491	0.0240761
chr11	73840420	73840520	4825700	0	+	0.44	(0.408,0.44]	chr11	450328	143	INTRON	INTRON	MRPL48	ENSG00000175581.14	ENST00000508278.6:ENST00000310614.12:ENST00000540162.5:ENST00000544140.5:ENST00000544819.5:ENST00000497094.6:ENST00000411840.6:ENST00000398483.7:ENST00000535277.5:ENST00000542303.5:ENST00000537007.5:ENST00000543058.1:ENST00000543374.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	45	2	2.51492	2.8872	3.25948	0.0329839	0.00246454	0.133816	0.0459102
chr16	58620284	58620384	6496287	0	-	0.44	(0.408,0.44]	chr16	628638	204	INTRON	INTRON	CNOT1	ENSG00000125107.19	ENST00000317147.10:ENST00000569240.5:ENST00000567188.5:ENST00000441024.6:ENST00000565605.5:ENST00000564557.1:ENST00000569916.1:ENST00000565697.1:ENST00000569020.5:ENST00000568158.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	45	2	2.51492	2.8872	3.25948	0.0329839	0.00246454	0.133816	0.0459102
chr20	63913487	63913586	7301143	0	+	0.424242	(0.408,0.44]	chr20	743137	45	INTRON	INTRON	DNAJC5	ENSG00000101152.11	ENST00000360864.9:ENST00000470551.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	45	2	2.51492	2.8872	3.25948	0.0329839	0.00246454	0.133816	0.0459102
chr12	48071068	48071166	5318092	0	-	0.357143	(0.35,0.378]	chr12	506155	38	INTRON	INTRON	SENP1	ENSG00000079387.14	ENST00000549518.6:ENST00000552189.5:ENST00000448372.5:ENST00000549595.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	48	2	2.66547	2.88705	3.10863	0.0233639	0.00470896	0.118323	0.0631419
chr2	61353284	61353384	1129368	0	-	0.37	(0.35,0.378]	chr2	121448	22	INTRON	INTRON	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000453133.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	48	2	2.66547	2.88705	3.10863	0.0233639	0.00470896	0.118323	0.0631419
chr2	113750768	113750868	1216768	0	-	0.48	(0.476,0.515]	chr2	129535	2	SS3_PROX	SS3_PROX:INTRON	SLC35F5	ENSG00000115084.15	ENST00000245680.7:ENST00000409106.5:ENST00000409342.1:ENST00000498768.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	44	2	2.69967	2.886945	3.07422	0.0195838	0.00506023	0.109483	0.0646039
chr9	94422220	94422320	4162641	0	+	0.48	(0.476,0.515]	chr9	379491	66	INTRON	INTRON	MFSD14B	ENSG00000148110.17	ENST00000375344.8	protein_coding	protein_coding	protein_coding	protein_coding	2	44	2	2.69967	2.886945	3.07422	0.0195838	0.00506023	0.109483	0.0646039
chr11	68469211	68469311	4817417	0	+	0.38	(0.378,0.408]	chr11	448907	80	INTRON	INTRON	PPP6R3	ENSG00000110075.15	ENST00000530427.5:ENST00000528635.5:ENST00000529907.5:ENST00000533127.5:ENST00000534534.5:ENST00000529344.5:ENST00000524845.5:ENST00000393800.7:ENST00000265637.8:ENST00000524904.5:ENST00000393801.7:ENST00000265636.9:ENST00000529710.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	46	2	2.60296	2.8869249999999997	3.17089	0.0267851	0.00357279	0.123349	0.0548435
chr19	50375049	50375147	7092583	0	+	0.408163	(0.378,0.408]	chr19	710716	17	INTRON	INTRON	NR1H2	ENSG00000131408.15	ENST00000600355.5:ENST00000593532.5:ENST00000652203.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	46	2	2.60296	2.8869249999999997	3.17089	0.0267851	0.00357279	0.123349	0.0548435
chr22	41110694	41110794	7521675	0	+	0.37	(0.35,0.378]	chr22	768519	22	INTRON	INTRON	EP300	ENSG00000100393.14	ENST00000263253.9:ENST00000674155.1:ENST00000637592.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	48	2	2.78212	2.8869249999999997	2.99173	0.0168532	0.00713365	0.103549	0.0756118
chrX	48915563	48915649	7815665	0	-	0.406977	(0.378,0.408]	chrX	796808	3	UTR5	UTR5:EXON_MRNA:SS3_PROX:INTRON	PIM2	ENSG00000102096.9	ENST00000376509.4:ENST00000442430.1	protein_coding	protein_coding	protein_coding	protein_coding	2	46	2	2.60296	2.8869249999999997	3.17089	0.0267851	0.00357279	0.123349	0.0548435
chr22	20932382	20932481	7480667	0	+	0.414141	(0.408,0.44]	chr22	763090	138	INTRON	INTRON	CRKL	ENSG00000099942.13	ENST00000354336.8:ENST00000411769.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	97	2	2.57365	2.88687	3.20009	0.00172241	4.59843e-4	0.0383099	0.01978
chr12	120139447	120139538	5432651	0	-	0.494505	(0.476,0.515]	chr12	519126	2	INTRON	INTRON	GCN1	ENSG00000089154.11	ENST00000300648.7	protein_coding	protein_coding	protein_coding	protein_coding	3	60	2	2.58253	2.8868600000000004	3.19119	0.00600101	0.00325748	0.0674604	0.0524329
chr1	16638767	16638867	383768	0	-	0.51	(0.476,0.515]	chr1	45226	32	INTRON	INTRON	CROCCP2	ENSG00000215908.10	ENST00000639456.1:ENST00000412962.4:ENST00000635081.1:ENST00000362058.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	2	44	2	2.82673	2.886825	2.94692	0.0134403	0.00794331	0.0946278	0.0797304
chr11	9240352	9240451	4908822	0	-	0.515152	(0.476,0.515]	chr11	460107	324	INTRON	INTRON	DENND5A	ENSG00000184014.9	ENST00000328194.8:ENST00000681203.1:ENST00000530780.2:ENST00000679999.1:ENST00000680470.1:ENST00000680554.1:ENST00000681425.1:ENST00000679568.1:ENST00000679446.1:ENST00000680294.1:ENST00000680742.1:ENST00000680885.1:ENST00000530044.5:ENST00000526707.5:ENST00000532696.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	44	2	2.82673	2.886825	2.94692	0.0134403	0.00794331	0.0946278	0.0797304
chr2	27350632	27350732	1086817	0	-	0.49	(0.476,0.515]	chr2	116360	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	GTF3C2	ENSG00000115207.15	ENST00000359541.6:ENST00000264720.8:ENST00000457748.1:ENST00000423998.1	protein_coding	protein_coding	protein_coding	protein_coding	2	44	2	2.82673	2.886825	2.94692	0.0134403	0.00794331	0.0946278	0.0797304
chr12	104618186	104618286	5212300	0	+	0.46	(0.44,0.476]	chr12	493329	158	INTRON	INTRON	CHST11	ENSG00000171310.11	ENST00000303694.6:ENST00000549260.5:ENST00000549016.1	protein_coding	protein_coding	protein_coding	protein_coding	3	60	2	2.51554	2.886775	3.25801	0.00777207	0.00248185	0.0757731	0.0460771
chr19	28523812	28523912	7166333	0	-	0.45	(0.44,0.476]	chr19	724189	556	INTRON	INTRON	ENSG00000283403:ENSG00000267243	ENSG00000283403.1:ENSG00000267243.6	ENST00000592347.5:ENST00000593065.5	lncRNA	lncRNA	lncRNA	lncRNA	8	151	2	2.84842	2.88675	2.92508	1.60775e-4	1.57183e-4	0.0116076	0.0107517
chr14	23070017	23070117	5842721	0	-	0.44	(0.408,0.44]	chr14	555610	4	SS3_PROX	SS3_PROX:INTRON	ACIN1	ENSG00000100813.15	ENST00000605057.6:ENST00000557515.5:ENST00000262710.5:ENST00000457657.5:ENST00000357481.6:ENST00000338631.10:ENST00000397341.7:ENST00000555053.5:ENST00000555566.1:ENST00000553721.5:ENST00000557432.2:ENST00000555352.2:ENST00000553501.1:ENST00000554979.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	151	2	2.79716	2.8866899999999998	2.97622	3.2852e-4	7.35724e-5	0.0167556	0.00714826
chr15	70091135	70091235	6215438	0	-	0.44	(0.408,0.44]	chr15	593115	146	INTRON	INTRON	TLE3	ENSG00000140332.18	ENST00000558939.5:ENST00000451782.7:ENST00000317509.12:ENST00000557919.5:ENST00000560525.6:ENST00000559929.5:ENST00000560589.5:ENST00000561453.5:ENST00000557997.5:ENST00000560939.5:ENST00000559048.5:ENST00000440567.7:ENST00000558201.5:ENST00000654081.1:ENST00000559191.5:ENST00000557907.5:ENST00000558379.5:ENST00000557984.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	45	2	2.82042	2.8866899999999998	2.95296	0.0120121	0.00929354	0.0962115	0.0817766
chr2	127706022	127706122	1224802	0	-	0.41	(0.408,0.44]	chr2	130406	51	UTR3	UTR3:EXON_MRNA	WDR33	ENSG00000136709.12	ENST00000322313.9	protein_coding	protein_coding	protein_coding	protein_coding	2	45	2	2.82042	2.8866899999999998	2.95296	0.0120121	0.00929354	0.0962115	0.0817766
chr2	158492094	158492194	897491	0	+	0.42	(0.408,0.44]	chr2	99341	334	INTRON	INTRON	PKP4	ENSG00000144283.23	ENST00000389759.8:ENST00000426248.7:ENST00000389757.7:ENST00000457109.5:ENST00000452162.5:ENST00000411900.5:ENST00000421462.5:ENST00000462335.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	45	2	2.82042	2.8866899999999998	2.95296	0.0120121	0.00929354	0.0962115	0.0817766
chr5	131718105	131718200	2719951	0	-	0.526316	(0.515,0.57]	chr5	255708	11	INTRON	INTRON	FNIP1	ENSG00000217128.13	ENST00000510461.6:ENST00000307954.12:ENST00000307968.11:ENST00000511848.1	protein_coding	protein_coding	protein_coding	protein_coding	10	132	2	2.38009	2.886625	3.39316	2.02074e-4	1.20237e-4	0.0124395	0.00992311
chr16	88752273	88752373	6539892	0	-	0.5	(0.476,0.515]	chr16	633998	24	INTRON	INTRON	PIEZO1	ENSG00000103335.22	ENST00000301015.14	protein_coding	protein_coding	protein_coding	protein_coding	3	61	2	2.69886	2.88654	3.07422	0.00506023	0.00385209	0.0646039	0.0542786
chr4	144014137	144014236	2251698	0	-	0.383838	(0.378,0.408]	chr4	219992	10	INTRON	INTRON	GYPB	ENSG00000250361.9	ENST00000502664.6:ENST00000506679.5:ENST00000429670.3:ENST00000507009.5:ENST00000513128.5:ENST00000505583.5:ENST00000506516.6:ENST00000513557.5:ENST00000513677.5:ENST00000511198.5:ENST00000504951.6:ENST00000510196.6:ENST00000503255.5:ENST00000638448.1:ENST00000508618.5:ENST00000508841.1:ENST00000642935.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	74	2	2.22859	2.8863250000000003	3.54406	0.00763308	0.00110718	0.0777238	0.0306086
chr21	14526981	14527080	7428011	0	-	0.363636	(0.35,0.378]	chr21	757769	32	INTRON	INTRON	SAMSN1	ENSG00000155307.19	ENST00000647101.1:ENST00000644288.1:ENST00000400564.5:ENST00000400566.6:ENST00000285670.7:ENST00000619120.4:ENST00000493640.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	104	2	2.83102	2.88617	2.94132	0.0016832	5.35542e-4	0.0370386	0.0209215
chr10	21707189	21707289	4406162	0	+	0.51	(0.476,0.515]	chr10	406537	102	INTRON	INTRON	MLLT10	ENSG00000078403.17	ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000651298.1:ENST00000377059.7:ENST00000651382.1:ENST00000438473.6:ENST00000420525.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	47	2	2.23335	2.8861499999999998	3.53895	0.0634557	0.00075485700000000005	0.177047	0.0251966
chr4	165342320	165342414	2079785	0	+	0.329787	(0.32,0.35]	chr4	205593	5	UTR3	UTR3:EXON_MRNA	MSMO1	ENSG00000052802.13	ENST00000261507.11:ENST00000393766.6	protein_coding	protein_coding	protein_coding	protein_coding	57	1033	2	2.19572	2.886145	3.57657	4.71398e-5	1.30913e-7	0.00560513	1.72353e-4
chr7	73446472	73446569	3554323	0	-	0.43299	(0.408,0.44]	chr7	330723	20	INTRON	INTRON	BAZ1B	ENSG00000009954.11	ENST00000339594.9:ENST00000404251.1	protein_coding	protein_coding	protein_coding	protein_coding	2	46	2	2.66579	2.8861	3.10641	0.019342	0.00555646	0.119831	0.0648867
chr8	54002100	54002197	3953099	0	-	0.546392	(0.515,0.57]	chr8	362553	17	INTRON	INTRON	TCEA1	ENSG00000187735.15	ENST00000396401.7:ENST00000521604.7:ENST00000521086.6:ENST00000522635.5:ENST00000522397.5:ENST00000640382.1:ENST00000640041.1:ENST00000520534.5:ENST00000518310.5:ENST00000517351.5:ENST00000521836.1:ENST00000518784.5:ENST00000519704.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	35	2	1.56838	2.886095	4.20381	0.0424458	0.0189208	0.161763	0.108861
chr2	173099480	173099580	920685	0	+	0.33	(0.32,0.35]	chr2	101411	79	INTRON	INTRON	MAP3K20	ENSG00000091436.17	ENST00000539448.5:ENST00000409176.6:ENST00000468408.5:ENST00000338983.7:ENST00000375213.8:ENST00000476618.5:ENST00000422149.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	52	2	2.78073	2.88599	2.99125	0.01481	0.00958447	0.106702	0.0820838
chr5	876612	876712	2564455	0	-	0.34	(0.32,0.35]	chr5	245469	4	SS3_PROX	SS3_PROX:INTRON	BRD9	ENSG00000028310.18	ENST00000493082.5:ENST00000467963.6:ENST00000495265.5:ENST00000490814.6:ENST00000495794.5:ENST00000483234.5:ENST00000489816.5:ENST00000483173.5:ENST00000519112.5:ENST00000518251.1:ENST00000475706.5:ENST00000466684.5:ENST00000519838.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	52	2	2.78073	2.88599	2.99125	0.01481	0.00958447	0.106702	0.0820838
chr5	75705006	75705104	2644252	0	-	0.530612	(0.515,0.57]	chr5	251389	18	INTRON	INTRON	POC5	ENSG00000152359.15	ENST00000428202.7:ENST00000514838.6:ENST00000446329.6:ENST00000510798.5:ENST00000503835.5:ENST00000504862.5:ENST00000515285.5:ENST00000502826.5:ENST00000506164.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	55	2	2.03361	2.88585	3.73809	0.0325854	3.11298e-4	0.145164	0.0162055
chr11	86038699	86038799	5014539	0	-	0.54	(0.515,0.57]	chr11	473022	67	INTRON	INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000630913.2:ENST00000528398.5:ENST00000356360.9:ENST00000534412.5:ENST00000531558.1:ENST00000531930.5:ENST00000532041.5:ENST00000525162.5:ENST00000528256.1:ENST00000528411.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	104	2	2.08115	2.885825	3.6905	0.00430805	1.45191e-5	0.0578073	0.0028542
chr7	152301268	152301368	3679935	0	-	0.47	(0.44,0.476]	chr7	341623	145	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000684262.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	59	2	2.69297	2.885795	3.07862	0.0060153	0.00333494	0.0674604	0.0528877
chr19	23801335	23801435	7042819	0	+	0.47	(0.44,0.476]	chr19	702227	140	INTRON	INTRON	RPSAP58	ENSG00000288920.1	ENST00000471224.5:ENST00000692590.1:ENST00000475499.2:ENST00000686829.1:ENST00000689525.1:ENST00000691397.1:ENST00000688405.1:ENST00000687994.1:ENST00000484897.4:ENST00000685490.1:ENST00000462186.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	59	2	2.54944	2.88568	3.22192	0.00591346	0.00360821	0.0694038	0.0533855
chr20	34910920	34911019	7261331	0	+	0.434343	(0.408,0.44]	chr20	737659	16	INTRON	INTRON	ACSS2	ENSG00000131069.20	ENST00000481971.5:ENST00000488172.5:ENST00000481284.5:ENST00000475459.6:ENST00000484354.1:ENST00000480274.1:ENST00000477932.5:ENST00000473172.5:ENST00000493805.6:ENST00000480978.5:ENST00000360596.7:ENST00000467019.5:ENST00000253382.5:ENST00000476922.5:ENST00000464399.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	11	129	2	1.21212	2.88568	4.55924	0.0473824	2.54711e-6	0.153019	0.00101667
chr2	10124352	10124440	690728	0	+	0.545455	(0.515,0.57]	chr2	81061	1	SS3_PROX	SS3_PROX:INTRON	RRM2	ENSG00000171848.16	ENST00000641198.1:ENST00000360566.6:ENST00000652660.1:ENST00000641498.1:ENST00000304567.10:ENST00000491447.1:ENST00000615152.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	63	2	2.46104	2.8856200000000003	3.3102	0.032841	1.88344e-4	0.145164	0.012549
chr16	74600565	74600664	6525267	0	-	0.494949	(0.476,0.515]	chr16	631842	374	INTRON	INTRON	GLG1	ENSG00000090863.12	ENST00000205061.9:ENST00000422840.7:ENST00000447066.6:ENST00000562090.5:ENST00000567951.5:ENST00000627032.2:ENST00000565260.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	95	2	2.56291	2.88556	3.20821	0.00222582	3.05489e-4	0.0421176	0.0155972
chr19	19423415	19423515	7035523	0	+	0.53	(0.515,0.57]	chr19	701433	170	INTRON	INTRON	GATAD2A	ENSG00000167491.18	ENST00000494516.6:ENST00000360315.7:ENST00000609040.5:ENST00000417582.6:ENST00000683918.1:ENST00000448576.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	51	2	2.51561	2.8855399999999998	3.25547	0.00635044	0.00261721	0.0723103	0.0455413
chr19	215249	215349	7108846	0	-	0.32	(0.28,0.32]	chr19	713698	4	INTRON	INTRON	LINC01002	ENSG00000282508.2	ENST00000631644.1:ENST00000632624.2:ENST00000633109.1:ENST00000633295.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	4	91	2	2.12073	2.885445	3.65016	0.0157269	6.39301e-4	0.101453	0.0228666
chr2	175156050	175156150	1272220	0	-	0.51	(0.476,0.515]	chr2	134482	45	INTRON	INTRON	ATF2	ENSG00000115966.18	ENST00000345739.9:ENST00000426833.7:ENST00000264110.7:ENST00000409635.5:ENST00000428760.5:ENST00000392544.5:ENST00000417080.5:ENST00000456655.5:ENST00000421438.5:ENST00000429579.5:ENST00000415955.5:ENST00000409499.5:ENST00000435231.6:ENST00000437522.5:ENST00000409833.5:ENST00000413123.5:ENST00000445349.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	95	2	2.87406	2.885395	2.89673	0.00188729	3.48163e-4	0.0391691	0.0166215
chr22	17641782	17641882	7475050	0	+	0.43	(0.408,0.44]	chr22	762152	25	INTRON	INTRON	BCL2L13	ENSG00000099968.18	ENST00000399781.5:ENST00000399782.5:ENST00000337612.9:ENST00000418951.6:ENST00000538149.5:ENST00000543133.5:ENST00000611738.4:ENST00000616863.4:ENST00000618481.4:ENST00000498133.5:ENST00000317582.10:ENST00000464649.1:ENST00000493680.5:ENST00000355028.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	60	2	2.21857	2.8853600000000004	3.55215	0.0209591	7.01039e-4	0.112046	0.0241881
chr10	72714324	72714419	4450310	0	+	0.463158	(0.44,0.476]	chr10	410738	16	INTRON	INTRON	MCU	ENSG00000156026.15	ENST00000373053.8:ENST00000357157.10:ENST00000604679.5:ENST00000604372.5:ENST00000603649.5:ENST00000605597.5:ENST00000536019.5:ENST00000604152.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	72	2	1.90381	2.885205	3.8666	0.0260626	1.50865e-4	0.122153	0.0106137
chr16	30288635	30288710	6472894	0	-	0.413333	(0.408,0.44]	chr16	625660	2	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO	SMG1P5	ENSG00000183604.15	ENST00000529428.5:ENST00000411546.4:ENST00000691460.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	4	38	2	1.43792	2.88515	4.33238	0.062843	0.0218901	0.196433	0.11491
chr5	29097086	29097185	2332726	0	+	0.50505	(0.476,0.515]	chr5	225147	266	INTRON	INTRON	LINC02109	ENSG00000259786.7	ENST00000658190.1	lncRNA	lncRNA	lncRNA	lncRNA	2	47	2	2.47949	2.885115	3.29074	0.0326974	0.00272563	0.145164	0.0467523
chr2	167929217	167929316	1259095	0	-	0.434343	(0.408,0.44]	chr2	133340	281	INTRON	INTRON	B3GALT1-AS1	ENSG00000235335.3	ENST00000430546.2:ENST00000657553.1:ENST00000670221.1:ENST00000436982.2	lncRNA	lncRNA	lncRNA	lncRNA	7	123	2	2.23161	2.88508	3.53855	0.00206564	8.35406e-5	0.04217	0.00815123
chr4	163530418	163530511	2078431	0	+	0.290323	(0.28,0.32]	chr4	205432	8	EXON_LNCRNA	EXON_LNCRNA	ENSG00000273449	ENSG00000273449.1	ENST00000609356.1	lncRNA	lncRNA	lncRNA	lncRNA	3	76	2	2.50462	2.885065	3.26551	0.0102735	0.0030714	0.0850389	0.0509893
chr1	1644244	1644339	360450	0	-	0.557895	(0.515,0.57]	chr1	41911	14	INTRON	INTRON	CDK11B	ENSG00000248333.9	ENST00000341832.11:ENST00000407249.7:ENST00000340677.9:ENST00000611150.3:ENST00000615951.4:ENST00000626918.2:ENST00000629289.2:ENST00000629312.2:ENST00000341028.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	27	2	1.8707	2.88463	3.89856	0.0523213	0.0280943	0.160182	0.137011
chr21	7059347	7059447	7365324	0	+	0.52	(0.515,0.57]	chr21	751699	99	INTRON	INTRON	ENSG00000277067	ENSG00000277067.4	ENST00000623095.3:ENST00000622911.1:ENST00000621909.4:ENST00000623394.3:ENST00000624310.1	lncRNA	lncRNA	lncRNA	lncRNA	2	27	2	1.8707	2.88463	3.89856	0.0523213	0.0280943	0.160182	0.137011
chr6	157836595	157836695	3015896	0	+	0.52	(0.515,0.57]	chr6	281353	65	INTRON	INTRON	SNX9	ENSG00000130340.17	ENST00000614703.4:ENST00000614800.4:ENST00000680863.1:ENST00000679814.1:ENST00000680464.1:ENST00000681186.1:ENST00000679732.1:ENST00000681183.1:ENST00000681534.1:ENST00000681651.1:ENST00000680089.1:ENST00000680078.1:ENST00000680974.1:ENST00000680095.1:ENST00000680015.1:ENST00000681138.1:ENST00000392185.8:ENST00000679790.1:ENST00000680495.1:ENST00000679691.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	61	2	2.31902	2.88458	3.45014	0.00493032	0.00116948	0.0646039	0.0312127
chr19	28492652	28492752	7166021	0	-	0.42	(0.408,0.44]	chr19	724189	244	INTRON	INTRON	ENSG00000283403:ENSG00000267243	ENSG00000283403.1:ENSG00000267243.6	ENST00000592347.5:ENST00000593065.5	lncRNA	lncRNA	lncRNA	lncRNA	9	160	2	2.26055	2.884545	3.50854	0.00154265	8.84313e-6	0.0357086	0.00213707
chr12	49497309	49497409	5134262	0	+	0.33	(0.32,0.35]	chr12	484038	3	SS5_PROX	SS5_PROX:INTRON	SPATS2	ENSG00000123352.18	ENST00000549412.5:ENST00000552918.6:ENST00000553127.5:ENST00000321898.10:ENST00000552557.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	51	2	2.68921	2.88448	3.07975	0.0230336	0.00554235	0.118056	0.0674105
chr10	34636785	34636885	4598507	0	-	0.5	(0.476,0.515]	chr10	423718	1193	INTRON	INTRON	PARD3	ENSG00000148498.17	ENST00000545260.5:ENST00000545693.5:ENST00000346874.9:ENST00000350537.9:ENST00000374788.8:ENST00000374789.8:ENST00000374790.8:ENST00000374794.8:ENST00000696673.1:ENST00000374776.6:ENST00000340077.9:ENST00000374773.6	protein_coding	protein_coding	protein_coding	protein_coding	2	30	2	1.79693	2.88447	3.97201	0.0649782	0.030904	0.179417	0.143385
chr15	22926207	22926307	6119569	0	-	0.5	(0.476,0.515]	chr15	582605	1	SS3_PROX	SS3_PROX:INTRON	CYFIP1	ENSG00000273749.5	ENST00000617928.5:ENST00000610365.4	protein_coding	protein_coding	protein_coding	protein_coding	2	30	2	1.79693	2.88447	3.97201	0.0649782	0.030904	0.179417	0.143385
chr22	19511967	19512066	7477169	0	+	0.515152	(0.476,0.515]	chr22	762458	29	INTRON	INTRON	CDC45	ENSG00000093009.11	ENST00000407835.6:ENST00000437685.6:ENST00000438587.6:ENST00000672837.1:ENST00000263201.7:ENST00000404724.7:ENST00000471470.1:ENST00000671972.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	30	2	1.79693	2.88447	3.97201	0.0649782	0.030904	0.179417	0.143385
chr2	8943464	8943564	1062964	0	-	0.51	(0.476,0.515]	chr2	113374	2	SS3_PROX	SS3_PROX:INTRON	MBOAT2	ENSG00000143797.12	ENST00000305997.8:ENST00000486484.5:ENST00000477073.5:ENST00000474341.5:ENST00000462696.1:ENST00000460786.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	80	2	2.76855	2.88445	3.00035	0.00244302	0.00109036	0.0456956	0.0303873
chr5	141615402	141615502	2740153	0	-	0.47	(0.44,0.476]	chr5	258168	268	INTRON	INTRON	DIAPH1	ENSG00000131504.18	ENST00000647433.1:ENST00000389054.8:ENST00000518047.5:ENST00000523100.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	13	232	2	2.50753	2.884445	3.26136	1.99806e-4	4.45255e-6	0.0129814	0.00142022
chr12	93403164	93403264	5189199	0	+	0.34	(0.32,0.35]	chr12	490816	39	UTR3	UTR3:EXON_MRNA	NUDT4	ENSG00000173598.14	ENST00000337179.9:ENST00000415493.7	protein_coding	protein_coding	protein_coding	protein_coding	2	51	2	2.74415	2.8844250000000002	3.0247	0.0198267	0.00671684	0.109608	0.0738715
chr22	29279905	29280005	7496182	0	+	0.35	(0.32,0.35]	chr22	764818	13	INTRON	INTRON	EWSR1	ENSG00000182944.18	ENST00000629659.2:ENST00000332050.10:ENST00000447973.5:ENST00000436425.5:ENST00000397938.7:ENST00000406548.5:ENST00000437155.6:ENST00000415761.5:ENST00000331029.11:ENST00000483415.5:ENST00000414183.6:ENST00000333395.10:ENST00000332035.10:ENST00000455726.5:ENST00000479135.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	51	2	2.74415	2.8844250000000002	3.0247	0.0198267	0.00671684	0.109608	0.0738715
chr5	146234341	146234439	2514428	0	+	0.387755	(0.378,0.408]	chr5	240188	2	INTRON	INTRON	ENSG00000275740:RBM27	ENSG00000275740.1:ENSG00000091009.8	ENST00000506502.2:ENST00000265271.7	protein_coding	protein_coding	protein_coding	protein_coding	3	35	2	1.78011	2.88439	3.98867	0.0507	0.0356367	0.156383	0.151629
chr21	34832063	34832162	7446701	0	-	0.393939	(0.378,0.408]	chr21	759831	22	INTRON	INTRON	RUNX1	ENSG00000159216.19	ENST00000300305.7:ENST00000675419.1:ENST00000437180.5:ENST00000344691.8:ENST00000482318.5:ENST00000399240.5:ENST00000358356.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	47	2	2.38873	2.884215	3.3797	0.0458857	0.00154501	0.149888	0.0362716
chr21	37477080	37477180	7407335	0	+	0.4	(0.378,0.408]	chr21	754906	38	INTRON	INTRON	DYRK1A	ENSG00000157540.22	ENST00000646523.1:ENST00000647425.1:ENST00000647188.2:ENST00000647504.1:ENST00000644942.1:ENST00000338785.8:ENST00000643624.1:ENST00000643551.1:ENST00000426672.6:ENST00000398960.7:ENST00000646548.1:ENST00000645424.1:ENST00000643854.1:ENST00000642309.1:ENST00000645774.1:ENST00000398956.2:ENST00000462274.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	103	2	2.12424	2.884215	3.64419	0.00224944	7.25777e-4	0.0435778	0.0247646
chr7	135508870	135508970	3648949	0	-	0.43	(0.408,0.44]	chr7	339188	4	SS5_PROX	SS5_PROX:INTRON	CNOT4	ENSG00000080802.20	ENST00000541284.6:ENST00000451834.5:ENST00000423368.6:ENST00000361528.8:ENST00000428680.6:ENST00000315544.6:ENST00000491203.5:ENST00000498534.5:ENST00000465721.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	96	2	2.45395	2.88415	3.31435	0.00366321	1.71418e-4	0.0535094	0.0113605
chr5	138338807	138338905	2494734	0	+	0.581633	(0.57,1]	chr5	238435	1	INTRON	INTRON	FAM53C	ENSG00000120709.11	ENST00000512180.5:ENST00000434981.6:ENST00000507506.5:ENST00000505768.1:ENST00000239906.10:ENST00000513056.5:ENST00000511024.5:ENST00000511276.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	67	2	2.56996	2.88408	3.1982	0.00499145	8.18683e-6	0.0646039	0.00217224
chr6	63641575	63641674	2883345	0	+	0.262626	[0,0.28]	chr6	273549	44	INTRON	INTRON	PHF3	ENSG00000118482.12	ENST00000262043.8:ENST00000506783.5:ENST00000481385.6:ENST00000515594.5:ENST00000494284.6:ENST00000509876.5:ENST00000509330.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	63	2	2.86008	2.8840250000000003	2.90797	0.0177015	0.0118539	0.105304	0.0962115
chr7	99133460	99133560	3583039	0	-	0.45	(0.44,0.476]	chr7	333710	119	INTRON	INTRON	SMURF1	ENSG00000198742.10	ENST00000361368.7:ENST00000361125.1:ENST00000472627.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	82	2	1.92704	2.88398	3.84092	0.0128054	2.66933e-4	0.0990564	0.0149989
chr21	42847047	42847146	7467576	0	-	0.282828	(0.28,0.32]	chr21	760925	34	INTRON	INTRON	WDR4	ENSG00000160193.12	ENST00000330317.6	protein_coding	protein_coding	protein_coding	protein_coding	7	126	2	1.6789	2.8839050000000004	4.08891	0.017572	1.67688e-4	0.11319	0.0118991
chr17	61779568	61779667	6808082	0	-	0.313131	(0.28,0.32]	chr17	672552	9	EXON_MRNA	EXON_MRNA:INTRON	BRIP1	ENSG00000136492.10	ENST00000259008.7:ENST00000682755.1:ENST00000682453.1:ENST00000683039.1:ENST00000682989.1:ENST00000682589.1:ENST00000683235.1:ENST00000682477.1:ENST00000684584.1:ENST00000682073.1:ENST00000577598.5:ENST00000684471.1:ENST00000682066.1:ENST00000584322.2:ENST00000683381.1:ENST00000579028.2:ENST00000583837.5:ENST00000682611.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	75	2	2.25939	2.8838749999999997	3.50836	0.021772	0.00117393	0.11491	0.0316446
chr6	98910629	98910728	3165210	0	-	0.464646	(0.44,0.476]	chr6	295199	46	INTRON	INTRON	FBXL4	ENSG00000112234.9	ENST00000369244.7:ENST00000229971.2	protein_coding	protein_coding	protein_coding	protein_coding	6	109	2	2.28698	2.8837099999999998	3.48044	0.0035357	6.78832e-5	0.052885	0.00682671
chr17	64489723	64489818	6815702	0	-	0.378947	(0.378,0.408]	chr17	673762	4	INTRON	INTRON	POLG2	ENSG00000256525.8	ENST00000539111.7:ENST00000581355.1:ENST00000671755.1:ENST00000673460.1:ENST00000585104.2:ENST00000577506.5:ENST00000585141.5:ENST00000578687.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	47	2	2.71183	2.883425	3.05502	0.0170789	0.00689519	0.110899	0.0717484
chr7	131374124	131374224	3416905	0	+	0.38	(0.378,0.408]	chr7	319187	458	INTRON	INTRON	MKLN1	ENSG00000128585.18	ENST00000421797.6:ENST00000416992.6:ENST00000429546.5:ENST00000446815.5:ENST00000494286.5:ENST00000352689.11:ENST00000494785.5:ENST00000458153.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	62	2	2.43657	2.8834150000000003	3.33026	0.0106733	0.00189824	0.0861859	0.0402736
chr1	161887061	161887161	237074	0	+	0.45	(0.44,0.476]	chr1	28616	4	SS3_PROX	SS3_PROX:INTRON	ATF6	ENSG00000118217.7	ENST00000680688.1:ENST00000679853.1:ENST00000681738.1:ENST00000681801.1:ENST00000681779.1:ENST00000367942.4:ENST00000681001.1:ENST00000679886.1:ENST00000681169.1:ENST00000681492.1:ENST00000680481.1:ENST00000680180.1:ENST00000681187.1:ENST00000681557.1:ENST00000681912.1:ENST00000681541.1:ENST00000681036.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	60	2	2.86231	2.883355	2.9044	0.012214	0.00132926	0.0910127	0.0335085
chr3	13350590	13350690	1617884	0	-	0.31	(0.28,0.32]	chr3	167134	69	INTRON	INTRON	NUP210	ENSG00000132182.13	ENST00000254508.7:ENST00000695490.1:ENST00000695491.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	104	2	1.75919	2.883225	4.00726	0.0300418	1.18967e-4	0.129138	0.00932482
chr2	131048074	131048173	1228631	0	-	0.383838	(0.378,0.408]	chr2	130962	3	UTR3	UTR3:EXON_MRNA	FAM168B	ENSG00000152102.18	ENST00000389915.4:ENST00000409185.5	protein_coding	protein_coding	protein_coding	protein_coding	14	263	2	2.46795	2.883175	3.2984	2.89901e-4	1.67008e-6	0.0157077	7.81803e-4
chr14	102632511	102632611	5822932	0	+	0.38	(0.378,0.408]	chr14	552490	388	INTRON	INTRON	RCOR1	ENSG00000089902.10	ENST00000262241.7	protein_coding	protein_coding	protein_coding	protein_coding	6	113	2	2.67359	2.883085	3.09258	8.09686e-4	4.32891e-4	0.0263656	0.0186929
chr1	16605603	16605703	383463	0	-	0.5	(0.476,0.515]	chr1	45139	3	EXON_LNCRNA	EXON_LNCRNA:INTRON	NBPF1	ENSG00000219481.11	ENST00000430580.6:ENST00000420513.1:ENST00000599069.5:ENST00000449853.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	79	2	2.62236	2.882995	3.14363	0.00517	4.25082e-4	0.0631506	0.018441
chr1	182391506	182391606	599068	0	-	0.68	(0.57,1]	chr1	71420	4	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	GLUL	ENSG00000135821.19	ENST00000331872.11:ENST00000311223.9:ENST00000339526.8:ENST00000463851.6:ENST00000484996.5:ENST00000489818.5:ENST00000480604.5:ENST00000462444.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	16	157	2	2.46024	2.8828750000000003	3.30551	7.97196e-5	6.89406e-8	0.00742971	1.11643e-4
chr12	386656	386747	5255066	0	-	0.318681	(0.28,0.32]	chr12	500040	3	INTRON	INTRON	KDM5A	ENSG00000073614.13	ENST00000399788.7:ENST00000544760.1:ENST00000535014.5:ENST00000536014.5:ENST00000543507.1	protein_coding	protein_coding	protein_coding	protein_coding	3	75	2	2.33381	2.882835	3.43186	0.0174951	0.00160646	0.104863	0.0367961
chr19	2759878	2759975	7116514	0	-	0.536082	(0.515,0.57]	chr19	715463	7	EXON_MRNA	EXON_MRNA:INTRON	SGTA	ENSG00000104969.11	ENST00000221566.7:ENST00000678109.1:ENST00000676984.1:ENST00000677513.1:ENST00000676943.1:ENST00000679132.1:ENST00000677731.1:ENST00000679138.1:ENST00000677562.1:ENST00000678595.1:ENST00000677754.1:ENST00000676611.1:ENST00000677149.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	71	2	2.32967	2.882825	3.43598	0.0133671	7.05043e-5	0.0946278	0.00694412
chr21	14760738	14760838	7430198	0	-	0.24	[0,0.28]	chr21	757888	63	INTRON	INTRON	ENSG00000232884	ENSG00000232884.10	ENST00000673788.1:ENST00000674136.1	lncRNA	lncRNA	lncRNA	lncRNA	3	86	2	2.86008	2.882765	2.90545	0.0177015	0.00202423	0.105304	0.0416117
chr2	189460610	189460708	952820	0	+	0.530612	(0.515,0.57]	chr2	103669	8	INTRON	INTRON	WDR75	ENSG00000115368.10	ENST00000436347.5:ENST00000314761.9:ENST00000427960.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	40	2	2.56306	2.88273	3.2024	0.0247751	0.00322022	0.131869	0.0507087
chr6	87181850	87181950	2913521	0	+	0.52	(0.515,0.57]	chr6	275281	116	INTRON	INTRON	ZNF292	ENSG00000188994.13	ENST00000369577.8:ENST00000369578.6:ENST00000518845.1:ENST00000339907.8:ENST00000496806.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	40	2	2.56306	2.88273	3.2024	0.0247751	0.00322022	0.131869	0.0507087
chr8	102350586	102350686	4012130	0	-	0.36	(0.35,0.378]	chr8	367218	31	INTRON	INTRON	UBR5	ENSG00000104517.13	ENST00000520539.6:ENST00000220959.8:ENST00000521922.5	protein_coding	protein_coding	protein_coding	protein_coding	6	99	2	2.2519	2.88269	3.51348	0.0020199	0.00136294	0.0416115	0.0336321
chr15	41295704	41295804	6004505	0	+	0.37	(0.35,0.378]	chr15	571266	49	INTRON	INTRON	OIP5-AS1	ENSG00000247556.6	ENST00000558945.5:ENST00000500949.6:ENST00000561275.5:ENST00000560706.5:ENST00000501665.2	lncRNA	lncRNA	lncRNA	lncRNA	3	65	2	2.14264	2.88268	3.62272	0.0274795	5.64719e-4	0.123904	0.021704
chr5	111100088	111100188	2451209	0	+	0.37	(0.35,0.378]	chr5	234798	1	SS3_PROX	SS3_PROX:INTRON	WDR36	ENSG00000134987.13	ENST00000505303.5:ENST00000513710.4:ENST00000504122.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	65	2	2.14264	2.88268	3.62272	0.0274795	5.64719e-4	0.123904	0.021704
chr21	43798693	43798787	7413711	0	+	0.595745	(0.57,1]	chr21	755643	2	INTRON	INTRON	RRP1	ENSG00000160214.13	ENST00000497547.2:ENST00000467112.5:ENST00000471909.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	47	2	2.28103	2.88266	3.48429	0.0151554	3.68893e-5	0.108535	0.00515993
chr3	50007512	50007612	1423635	0	+	0.47	(0.44,0.476]	chr3	149994	76	INTRON	INTRON	RBM6	ENSG00000004534.15	ENST00000442092.5:ENST00000443081.5:ENST00000419610.5:ENST00000441115.5:ENST00000422955.5:ENST00000454079.5:ENST00000266022.9:ENST00000425608.5:ENST00000434592.5:ENST00000464013.5:ENST00000483350.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	59	2	2.73781	2.88266	3.02751	0.00715968	0.00276493	0.0723634	0.04867
chr19	11117098	11117198	7017111	0	+	0.38	(0.378,0.408]	chr19	697484	1	SS5_PROX	SS5_PROX:INTRON	LDLR	ENSG00000130164.14	ENST00000557933.5:ENST00000558518.6:ENST00000545707.5:ENST00000535915.5:ENST00000455727.6:ENST00000558013.5:ENST00000252444.9:ENST00000559340.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	137	2	2.26244	2.88259	3.50274	0.00112365	1.11534e-4	0.0308177	0.00945289
chr1	229337611	229337710	652560	0	-	0.323232	(0.32,0.35]	chr1	77248	97	INTRON	INTRON	CCSAP	ENSG00000154429.11	ENST00000366687.5:ENST00000284617.7:ENST00000366686.1:ENST00000483092.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	70	2	2.04237	2.882565	3.72276	0.0375542	3.96144e-4	0.140222	0.0178616
chr9	92289200	92289300	4287303	0	-	0.25	[0,0.28]	chr9	394264	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	IARS1	ENSG00000196305.19	ENST00000375643.7:ENST00000443024.7:ENST00000447699.7:ENST00000683537.1:ENST00000684726.1:ENST00000683192.1:ENST00000683565.1:ENST00000682756.1:ENST00000684542.1:ENST00000683793.1:ENST00000683817.1:ENST00000682141.1:ENST00000682893.1:ENST00000684557.1:ENST00000498025.2:ENST00000682156.1:ENST00000627121.3:ENST00000683469.1:ENST00000683495.1:ENST00000682578.1:ENST00000682533.1:ENST00000472894.2:ENST00000684757.1:ENST00000684445.1:ENST00000683376.1:ENST00000683679.1:ENST00000683119.1:ENST00000490438.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	235	2	2.07625	2.882565	3.68888	0.00654832	9.85756e-6	0.0701428	0.00228118
chr9	109096275	109096374	4312366	0	-	0.50505	(0.476,0.515]	chr9	396380	23	INTRON	INTRON	TMEM245	ENSG00000106771.13	ENST00000374586.8:ENST00000491854.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	59	2	2.31726	2.88255	3.44784	0.015077	0.00113238	0.0994339	0.0308465
chr16	16592584	16592684	6311788	0	+	0.51	(0.476,0.515]	chr16	604098	926	INTRON	INTRON	ENSG00000260126	ENSG00000260126.2	ENST00000567465.2	lncRNA	lncRNA	lncRNA	lncRNA	2	44	2	2.87879	2.882545	2.8863	0.0111679	0.00999149	0.0879541	0.0877435
chr6	17661152	17661252	3065745	0	-	0.48	(0.476,0.515]	chr6	284825	1	SS5_PROX	SS5_PROX:INTRON	NUP153	ENSG00000124789.12	ENST00000613258.4:ENST00000537253.5:ENST00000262077.3	protein_coding	protein_coding	protein_coding	protein_coding	2	44	2	2.87879	2.882545	2.8863	0.0111679	0.00999149	0.0879541	0.0877435
chr10	86791196	86791295	4479743	0	+	0.484848	(0.476,0.515]	chr10	412292	339	INTRON	INTRON	BMPR1A	ENSG00000107779.14	ENST00000638429.1:ENST00000372037.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	59	2	2.365	2.882515	3.40003	0.0128901	0.00139193	0.0926667	0.0341261
chr19	13102053	13102148	7142917	0	-	0.515789	(0.515,0.57]	chr19	721015	10	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	LYL1	ENSG00000104903.5	ENST00000264824.5:ENST00000590974.1:ENST00000590120.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	68	2	2.84387	2.88251	2.92115	0.0018149	0.00110258	0.0384415	0.03038
chr10	68424480	68424580	4639280	0	-	0.46	(0.44,0.476]	chr10	426660	12	INTRON	INTRON	DNA2	ENSG00000138346.15	ENST00000358410.8:ENST00000551118.6:ENST00000399179.6:ENST00000399180.3:ENST00000440722.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	59	2	2.49823	2.88246	3.26669	0.00718224	0.00305435	0.0756118	0.0493883
chr7	10491843	10491943	3481697	0	-	0.4	(0.378,0.408]	chr7	325766	387	INTRON	INTRON	MGC4859	ENSG00000283117.1	ENST00000634803.1	lncRNA	lncRNA	lncRNA	lncRNA	5	84	2	2.12071	2.88245	3.64419	0.00601933	7.25777e-4	0.0700813	0.0247646
chr1	186402018	186402117	277817	0	+	0.323232	(0.32,0.35]	chr1	32482	26	INTRON	INTRON	ODR4	ENSG00000157181.16	ENST00000367470.8:ENST00000287859.11:ENST00000419367.8:ENST00000478571.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	51	2	2.6321	2.882435	3.13277	0.0268	0.00458313	0.123349	0.0622676
chr12	50526328	50526428	5137363	0	+	0.35	(0.32,0.35]	chr12	484468	207	INTRON	INTRON	DIP2B	ENSG00000066084.13	ENST00000301180.10:ENST00000549620.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	51	2	2.6321	2.882435	3.13277	0.0268	0.00458313	0.123349	0.0622676
chr17	5572693	5572792	6715731	0	-	0.333333	(0.32,0.35]	chr17	658470	123	INTRON	INTRON	NLRP1	ENSG00000091592.16	ENST00000544378.6:ENST00000262467.10:ENST00000613500.4:ENST00000572272.6:ENST00000571451.6:ENST00000269280.8:ENST00000619223.4:ENST00000617618.4:ENST00000345221.7:ENST00000354411.7:ENST00000577119.5:ENST00000571307.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	51	2	2.6321	2.882435	3.13277	0.0268	0.00458313	0.123349	0.0622676
chr7	128492907	128493006	3407238	0	+	0.333333	(0.32,0.35]	chr7	318303	44	INTRON	INTRON	ENSG00000273184:METTL2B	ENSG00000273184.1:ENSG00000165055.16	ENST00000462662.1:ENST00000482555.5:ENST00000262432.13:ENST00000497665.5:ENST00000480046.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA	2	51	2	2.6321	2.882435	3.13277	0.0268	0.00458313	0.123349	0.0622676
chr1	45654829	45654929	440265	0	-	0.38	(0.378,0.408]	chr1	53343	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GPBP1L1	ENSG00000159592.11	ENST00000290795.7:ENST00000355105.8:ENST00000498128.1:ENST00000496278.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	34	2	1.65821	2.88241	4.10661	0.0506302	0.0399023	0.17547	0.143072
chr2	171144951	171145051	1263940	0	-	0.4	(0.378,0.408]	chr2	133921	267	INTRON	INTRON	TLK1	ENSG00000198586.14	ENST00000431350.7:ENST00000360843.7:ENST00000359766.7:ENST00000521943.5:ENST00000409443.6:ENST00000413010.5:ENST00000470340.1:ENST00000466220.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	34	2	1.65821	2.88241	4.10661	0.0506302	0.0399023	0.17547	0.143072
chr18	9575965	9576064	6945918	0	-	0.414141	(0.408,0.44]	chr18	686985	49	INTRON	INTRON	PPP4R1	ENSG00000154845.16	ENST00000400555.7:ENST00000400556.8:ENST00000285124.12	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	84	2	2.1269	2.8823749999999997	3.63785	0.00691204	4.70012e-4	0.0718189	0.0196294
chr1	67429035	67429135	477623	0	-	0.45	(0.44,0.476]	chr1	57499	2	SS5_PROX	SS5_PROX:INTRON	SERBP1	ENSG00000142864.15	ENST00000370994.8:ENST00000361219.11:ENST00000370995.6:ENST00000370990.5:ENST00000490406.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	160	2	2.34296	2.882365	3.42177	7.10457e-4	2.89989e-5	0.0242715	0.00447916
chr19	1461340	1461440	7111988	0	-	0.6	(0.57,1]	chr19	714460	3	UTR3	UTR3:EXON_MRNA	C19orf25	ENSG00000119559.17	ENST00000588427.5	protein_coding	protein_coding	protein_coding	protein_coding	3	33	2	2.73499	2.8823299999999996	3.02967	0.00471306	0.00237434	0.0631419	0.0438057
chr8	23533615	23533714	3715144	0	+	0.494949	(0.476,0.515]	chr8	345217	18	INTRON	INTRON	SLC25A37	ENSG00000147454.14	ENST00000519973.6:ENST00000290075.10:ENST00000417331.6:ENST00000518881.5:ENST00000520654.1:ENST00000523930.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	73	2	1.7425	2.882295	4.02209	0.0417334	6.68973e-5	0.147007	0.00677892
chr20	49284492	49284590	7284666	0	+	0.387755	(0.378,0.408]	chr20	741065	23	INTRON	INTRON	ZFAS1	ENSG00000177410.13	ENST00000371743.8:ENST00000417721.5:ENST00000441722.5:ENST00000450535.5:ENST00000458653.5:ENST00000428008.6:ENST00000620594.2:ENST00000652916.1:ENST00000326677.9:ENST00000659056.1	lncRNA	lncRNA	lncRNA	lncRNA	5	100	2	2.57022	2.882275	3.19433	0.00179058	5.08283e-4	0.0392749	0.020816
chr16	70561348	70561441	6385539	0	+	0.462366	(0.44,0.476]	chr16	613965	1	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	SF3B3	ENSG00000189091.13	ENST00000302516.10:ENST00000568539.1:ENST00000563739.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	44	2	2.74063	2.882145	3.02366	0.0176095	0.00603307	0.105143	0.0700813
chr2	238448984	238449083	1052790	0	+	0.464646	(0.44,0.476]	chr2	112004	26	UTR3	UTR3:EXON_MRNA:INTRON	ASB1	ENSG00000065802.12	ENST00000264607.9:ENST00000481566.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	44	2	2.74063	2.882145	3.02366	0.0176095	0.00603307	0.105143	0.0700813
chr10	68332535	68332635	4440763	0	+	0.55	(0.515,0.57]	chr10	409479	3	SS5_PROX	SS5_PROX:INTRON	HNRNPH3	ENSG00000096746.18	ENST00000469172.5:ENST00000461310.5:ENST00000265866.12:ENST00000480987.5:ENST00000486854.5:ENST00000467249.1:ENST00000354695.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	24	345	2	2.60036	2.88213	3.1639	5.05254e-6	1.47407e-6	0.00153439	0.00079897500000000005
chr1	1389047	1389147	359801	0	-	0.54	(0.515,0.57]	chr1	41764	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	CCNL2	ENSG00000221978.13	ENST00000400809.8:ENST00000480479.5:ENST00000482621.5:ENST00000496007.5:ENST00000482365.5:ENST00000481223.6:ENST00000418865.6:ENST00000505849.5:ENST00000488340.5:ENST00000492998.5:ENST00000469113.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	16	208	2	2.5134	2.8821	3.2508	4.99309e-5	1.81968e-5	0.00611391	0.0032648
chrX	121208931	121209031	7715279	0	+	0.41	(0.408,0.44]	chrX	789390	227	INTRON	INTRON	ENSG00000286163	ENSG00000286163.1	ENST00000651788.1	lncRNA	lncRNA	lncRNA	lncRNA	3	60	2	2.86612	2.882035	2.89795	0.0110735	0.00157924	0.0873897	0.0366789
chr14	101880262	101880362	5819699	0	+	0.41	(0.408,0.44]	chr14	551883	5	INTRON	INTRON	PPP2R5C	ENSG00000078304.20	ENST00000694906.1:ENST00000422945.6:ENST00000328724.9:ENST00000350249.7:ENST00000557621.5:ENST00000556307.5:ENST00000553730.5:ENST00000334743.9:ENST00000445439.7:ENST00000557095.5:ENST00000556570.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	72	2	2.00629	2.88192	3.75755	0.0189661	2.62433e-4	0.108861	0.0143317
chr9	135960229	135960327	4372561	0	-	0.387755	(0.378,0.408]	chr9	402553	45	INTRON	INTRON	UBAC1	ENSG00000130560.9	ENST00000371756.4:ENST00000478485.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	102	2	2.5938	2.881865	3.16993	0.00614976	7.75659e-5	0.0676501	0.00735438
chr1	65261213	65261312	135603	0	+	0.464646	(0.44,0.476]	chr1	15341	62	INTRON	INTRON	DNAJC6	ENSG00000116675.16	ENST00000463018.5:ENST00000494710.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	99	2	2.1123	2.881825	3.65135	0.0023263	6.34922e-4	0.0442989	0.023163
chr10	119068647	119068746	4704800	0	-	0.464646	(0.44,0.476]	chr10	433990	27	INTRON	INTRON	EIF3A	ENSG00000107581.13	ENST00000369144.8:ENST00000541549.2	protein_coding	protein_coding	protein_coding	protein_coding	4	79	2	2.74546	2.88164	3.01782	0.00326603	7.8136e-4	0.0508595	0.0257169
chr17	41776702	41776801	6769237	0	-	0.565657	(0.515,0.57]	chr17	666305	34	INTRON	INTRON	JUP	ENSG00000173801.17	ENST00000310706.9:ENST00000393930.5:ENST00000393931.8:ENST00000449889.5:ENST00000437187.5:ENST00000424457.5:ENST00000591690.5:ENST00000437369.5:ENST00000589036.1:ENST00000465293.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	62	2	2.61581	2.881555	3.1473	0.00397184	0.00127505	0.0549214	0.0331722
chr16	23565733	23565830	6323143	0	+	0.360825	(0.35,0.378]	chr16	605564	9	EXON_MRNA	EXON_MRNA:INTRON	UBFD1	ENSG00000103353.16	ENST00000567212.5:ENST00000395878.8:ENST00000563366.5:ENST00000565634.5:ENST00000564106.1:ENST00000566136.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	64	2	2.67874	2.881525	3.08431	0.0065853	0.00373022	0.0701901	0.0561984
chr6	20968168	20968268	2832729	0	+	0.53	(0.515,0.57]	chr6	265685	122	INTRON	INTRON	CDKAL1	ENSG00000145996.11	ENST00000274695.8:ENST00000378610.1	protein_coding	protein_coding	protein_coding	protein_coding	3	30	2	1.67758	2.88148	4.08538	0.0471728	0.0253843	0.168737	0.12011
chr1	55115321	55115420	464852	0	-	0.545455	(0.515,0.57]	chr1	56085	47	INTRON	INTRON	USP24	ENSG00000162402.14	ENST00000294383.7	protein_coding	protein_coding	protein_coding	protein_coding	3	51	2	2.73258	2.881475	3.03037	0.00608732	0.00260192	0.0676501	0.0470772
chr2	74106276	74106376	813012	0	+	0.45	(0.44,0.476]	chr2	90903	42	UTR3	UTR3:EXON_MRNA	TET3	ENSG00000187605.16	ENST00000409262.8	protein_coding	protein_coding	protein_coding	protein_coding	3	62	2	2.14573	2.881455	3.61718	0.0238593	7.37432e-4	0.129075	0.02495
chr7	152088496	152088596	3450144	0	+	0.28	[0,0.28]	chr7	322451	87	INTRON	INTRON	GALNT11	ENSG00000178234.13	ENST00000430044.7:ENST00000482812.1:ENST00000431668.1:ENST00000446096.5:ENST00000447778.5:ENST00000423337.5:ENST00000434507.5:ENST00000415421.5:ENST00000422997.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	64	2	2.38757	2.881435	3.3753	0.0552962	0.00242466	0.165463	0.0454587
chr5	65526167	65526266	2633913	0	-	0.343434	(0.32,0.35]	chr5	250149	11	INTRON	INTRON	CENPK	ENSG00000123219.13	ENST00000514814.5:ENST00000396679.6:ENST00000242872.7:ENST00000508421.5:ENST00000510693.5:ENST00000506282.6:ENST00000511841.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	53	2	2.64129	2.8813750000000002	3.12146	0.0222819	0.00630799	0.124303	0.0687526
chr17	30747840	30747940	6589966	0	+	0.45	(0.44,0.476]	chr17	640860	41	INTRON	INTRON	SUZ12P1	ENSG00000264538.7	ENST00000578070.5:ENST00000579526.5:ENST00000690405.1:ENST00000497969.6:ENST00000578195.6:ENST00000582557.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	5	95	2	2.67227	2.88133	3.09039	0.0010793	7.4601e-4	0.0300133	0.0251072
chr17	17212980	17213076	6735809	0	-	0.552083	(0.515,0.57]	chr17	660861	9	UTR3	UTR3:EXON_MRNA	FLCN	ENSG00000154803.13	ENST00000285071.9	protein_coding	protein_coding	protein_coding	protein_coding	3	51	2	2.45585	2.8812499999999996	3.30665	0.00797827	0.00213226	0.0798772	0.041756
chr7	65978686	65978785	3538190	0	-	0.545455	(0.515,0.57]	chr7	330021	21	INTRON	INTRON	GUSB	ENSG00000169919.17	ENST00000304895.9:ENST00000430730.5:ENST00000447929.5:ENST00000421103.5:ENST00000465785.5:ENST00000479038.1:ENST00000475316.5:ENST00000476486.5:ENST00000446111.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	51	2	2.45585	2.8812499999999996	3.30665	0.00797827	0.00213226	0.0798772	0.041756
chr7	100312621	100312721	3586534	0	-	0.57	(0.515,0.57]	chr7	334330	115	INTRON	INTRON	PMS2P1	ENSG00000078319.11	ENST00000685724.1:ENST00000692351.1:ENST00000685541.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	3	51	2	2.45585	2.8812499999999996	3.30665	0.00797827	0.00213226	0.0798772	0.041756
chr3	172398972	172399072	1563176	0	+	0.35	(0.32,0.35]	chr3	161696	16	UTR3	UTR3:EXON_MRNA	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000336824.8	protein_coding	protein_coding	protein_coding	protein_coding	5	111	2	2.84042	2.88123	2.92204	0.00202818	5.6233e-4	0.04086	0.0216562
chr1	235174783	235174883	662302	0	-	0.59	(0.57,1]	chr1	78426	2	SS5_PROX	SS5_PROX:INTRON	ARID4B	ENSG00000054267.22	ENST00000474953.5:ENST00000349213.7:ENST00000366603.6:ENST00000264183.9:ENST00000421364.5:ENST00000474401.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	25	2	2.53383	2.881195	3.22856	0.02547	0.00205928	0.12011	0.0420839
chr3	138770617	138770716	1830857	0	-	0.30303	(0.28,0.32]	chr3	184056	1	INTRON	INTRON	PIK3CB	ENSG00000051382.9	ENST00000674063.1:ENST00000477593.5:ENST00000462898.5:ENST00000483968.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	75	2	2.36963	2.8808350000000003	3.39204	0.0157022	0.00188405	0.101453	0.0402736
chr2	208246895	208246992	1318590	0	-	0.463918	(0.44,0.476]	chr2	138294	11	INTRON	INTRON	IDH1	ENSG00000138413.14	ENST00000345146.7:ENST00000446179.5:ENST00000415913.5:ENST00000415282.5	protein_coding	protein_coding	protein_coding	protein_coding	2	44	2	2.67572	2.880815	3.08591	0.0212064	0.00481262	0.113017	0.0638089
chr7	105256709	105256809	3602577	0	-	0.47	(0.44,0.476]	chr7	336137	498	INTRON	INTRON	SRPK2	ENSG00000135250.17	ENST00000393651.8:ENST00000357311.7:ENST00000489828.5:ENST00000482897.5:ENST00000460391.5:ENST00000462282.5:ENST00000465112.5:ENST00000482862.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	44	2	2.67572	2.880815	3.08591	0.0212064	0.00481262	0.113017	0.0638089
chr14	23064895	23064988	5842663	0	-	0.376344	(0.35,0.378]	chr14	555590	3	SS3_PROX	SS3_PROX:INTRON	ACIN1	ENSG00000100813.15	ENST00000605057.6:ENST00000557515.5:ENST00000262710.5:ENST00000457657.5:ENST00000357481.6:ENST00000338631.10:ENST00000473758.5:ENST00000397341.7:ENST00000555053.5:ENST00000555566.1:ENST00000557039.1:ENST00000555807.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	256	2	2.79046	2.88076	2.97106	2.12609e-4	6.6765e-6	0.0132903	0.00182752
chr7	158757104	158757203	3689078	0	-	0.373737	(0.35,0.378]	chr7	342353	39	INTRON	INTRON	ESYT2	ENSG00000117868.18	ENST00000251527.10:ENST00000275418.13:ENST00000652148.1	protein_coding	protein_coding	protein_coding	protein_coding	5	88	2	2.11889	2.880705	3.64252	0.00625927	8.02255e-4	0.0720609	0.0262199
chr11	484258	484357	4719247	0	+	0.565657	(0.515,0.57]	chr11	436026	38	INTRON	INTRON	PTDSS2	ENSG00000174915.12	ENST00000532614.5:ENST00000308020.6:ENST00000531520.5:ENST00000526878.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	113	2	2.1218	2.8806849999999997	3.63957	0.00198964	2.92494e-5	0.0411469	0.00449807
chr1	6846961	6847060	6260	0	+	0.444444	(0.44,0.476]	chr1	1143	214	INTRON	INTRON	CAMTA1	ENSG00000171735.19	ENST00000303635.12:ENST00000490738.5:ENST00000476163.5:ENST00000473578.5:ENST00000557126.5:ENST00000467404.6:ENST00000461311.1:ENST00000486138.1:ENST00000482934.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	44	2	2.80275	2.880675	2.9586	0.0146513	0.00758318	0.0982604	0.0773151
chr1	65049372	65049471	475383	0	-	0.444444	(0.44,0.476]	chr1	57241	44	INTRON	INTRON	JAK1	ENSG00000162434.13	ENST00000672434.1:ENST00000671954.1:ENST00000673502.1:ENST00000672751.1:ENST00000672099.1	protein_coding	protein_coding	protein_coding	protein_coding	2	44	2	2.80275	2.880675	2.9586	0.0146513	0.00758318	0.0982604	0.0773151
chr12	104496805	104496905	5211082	0	+	0.45	(0.44,0.476]	chr12	493315	389	INTRON	INTRON	CHST11	ENSG00000171310.11	ENST00000303694.6:ENST00000547956.1:ENST00000549260.5:ENST00000546689.1	protein_coding	protein_coding	protein_coding	protein_coding	2	44	2	2.80275	2.880675	2.9586	0.0146513	0.00758318	0.0982604	0.0773151
chr7	100342017	100342115	3364397	0	+	0.377551	(0.35,0.378]	chr7	314641	8	INTRON	INTRON	STAG3L5P:STAG3L5P-PVRIG2P-PILRB	ENSG00000242294.6:ENSG00000272752.6	ENST00000473757.5:ENST00000470714.5:ENST00000310771.8:ENST00000483329.6:ENST00000444874.5:ENST00000488972.6:ENST00000493499.1	lncRNA	retained_intron	lncRNA:transcribed_unprocessed_pseudogene	retained_intron:lncRNA:processed_transcript	4	77	2	2.28182	2.8805750000000003	3.47933	0.00637232	0.0015613	0.0724821	0.0360352
chr9	128091870	128091970	4202669	0	+	0.59	(0.57,1]	chr9	383915	1	CDS_START	CDS_START:CDS:EXON_MRNA:INTRON	SLC25A25	ENSG00000148339.13	ENST00000373068.6:ENST00000373069.10:ENST00000373066.9:ENST00000432073.6:ENST00000682371.1:ENST00000682638.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	25	2	2.66801	2.88057	3.09313	0.0169968	0.00369015	0.110899	0.0535094
chr9	130716754	130716854	4213892	0	+	0.59	(0.57,1]	chr9	386427	19	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000393293.4	protein_coding	protein_coding	protein_coding	protein_coding	2	25	2	2.66801	2.88057	3.09313	0.0169968	0.00369015	0.110899	0.0535094
chr16	48377838	48377938	6483986	0	-	0.39	(0.378,0.408]	chr16	627085	121	INTRON	INTRON	SIAH1	ENSG00000196470.12	ENST00000568007.5:ENST00000394725.3:ENST00000563745.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	61	2	2.61188	2.8804	3.14892	0.00499984	0.0047055	0.0631419	0.0617433
chr20	62905368	62905461	7362235	0	-	0.365591	(0.35,0.378]	chr20	751177	5	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	DIDO1	ENSG00000101191.17	ENST00000266070.8:ENST00000395343.6:ENST00000395340.5:ENST00000370371.8:ENST00000370368.5:ENST00000354665.8:ENST00000370366.1	protein_coding	protein_coding	protein_coding	protein_coding	9	157	2	1.97767	2.8803900000000002	3.78311	0.00335504	2.9008e-5	0.0531599	0.00447916
chr20	58653835	58653934	7290198	0	+	0.363636	(0.35,0.378]	chr20	741709	13	INTRON	INTRON	STX16	ENSG00000124222.22	ENST00000361830.7:ENST00000355957.9:ENST00000458280.5:ENST00000312283.12:ENST00000412911.5:ENST00000371141.8:ENST00000359617.8:ENST00000460655.5:ENST00000476384.5:ENST00000483434.5:ENST00000496117.5:ENST00000490700.5:ENST00000371132.8:ENST00000496003.5:ENST00000467096.5:ENST00000358029.8:ENST00000464640.5:ENST00000493301.5:ENST00000468590.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	33	2	1.81767	2.88029	3.94291	0.0640429	0.0374229	0.177882	0.155878
chr8	97713062	97713161	3809756	0	+	0.353535	(0.35,0.378]	chr8	352878	60	INTRON	INTRON	MTDH	ENSG00000147649.10	ENST00000336273.8:ENST00000519934.5:ENST00000519293.1:ENST00000521933.1:ENST00000522104.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	33	2	1.81767	2.88029	3.94291	0.0640429	0.0374229	0.177882	0.155878
chr16	31184398	31184496	6340601	0	+	0.408163	(0.378,0.408]	chr16	608333	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	FUS	ENSG00000089280.19	ENST00000566605.5:ENST00000254108.12:ENST00000380244.7:ENST00000487509.6:ENST00000568685.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	20	368	2	2.59054	2.880065	3.16959	4.55837e-5	2.23093e-6	0.00583644	9.37947e-4
chr2	113191386	113191484	852602	0	+	0.510204	(0.476,0.515]	chr2	95646	48	INTRON	INTRON	PSD4	ENSG00000125637.16	ENST00000245796.11:ENST00000418251.6:ENST00000441564.7:ENST00000409656.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	31	2	1.92984	2.88001	3.83018	0.0466474	0.0423385	0.161744	0.151522
chr18	32116648	32116748	6887512	0	+	0.53	(0.515,0.57]	chr18	682674	24	INTRON	INTRON	RNF138	ENSG00000134758.14	ENST00000261593.8:ENST00000257190.9:ENST00000580499.1	protein_coding	protein_coding	protein_coding	protein_coding	3	52	2	2.08547	2.88	3.67453	0.0289426	3.27949e-4	0.1274	0.0160995
chr10	35367159	35367258	4424809	0	+	0.272727	[0,0.28]	chr10	407899	296	INTRON	INTRON	CCNY	ENSG00000108100.18	ENST00000374706.5:ENST00000490012.6:ENST00000493157.6:ENST00000374704.8:ENST00000265375.13:ENST00000339497.7:ENST00000492478.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	106	2	2.78378	2.87997	2.97616	0.0128425	0.00105071	0.0926667	0.0298884
chr5	139315120	139315216	2499599	0	+	0.333333	(0.32,0.35]	chr5	238925	5	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MATR3	ENSG00000280987.4:ENSG00000015479.20	ENST00000509990.5:ENST00000506147.5:ENST00000512107.5:ENST00000361059.7:ENST00000394800.6:ENST00000502929.5:ENST00000504203.5:ENST00000509644.5:ENST00000512876.5:ENST00000513678.5:ENST00000513121.1:ENST00000504045.5:ENST00000504311.5:ENST00000502499.5:ENST00000510056.5:ENST00000511249.5:ENST00000394805.8:ENST00000507860.1:ENST00000509918.5:ENST00000503811.5:ENST00000511978.5:ENST00000618441.5:ENST00000514528.5:ENST00000504643.5:ENST00000515833.2:ENST00000514402.1:ENST00000505625.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	27	546	2	2.8533	2.879925	2.90655	2.80324e-5	1.87816e-6	0.00435887	8.35956e-4
chr12	24855245	24855345	5296966	0	-	0.39	(0.378,0.408]	chr12	503853	49	INTRON	INTRON	BCAT1	ENSG00000060982.15	ENST00000261192.12:ENST00000538118.5:ENST00000342945.9:ENST00000539282.5:ENST00000539780.5:ENST00000544418.1:ENST00000612790.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:processed_transcript	9	173	2	2.72091	2.879805	3.0387	5.24084e-4	2.17082e-5	0.0210958	0.00362464
chr22	15785457	15785557	7472896	0	+	0.36	(0.35,0.378]	chr22	761922	4	SS5_PROX	SS5_PROX:INTRON	DUXAP8	ENSG00000206195.11	ENST00000413768.5:ENST00000437781.5:ENST00000383038.7:ENST00000661115.1:ENST00000603308.2:ENST00000447898.5	lncRNA	lncRNA	lncRNA	lncRNA	6	98	2	1.91549	2.879655	3.84382	0.00887698	3.33157e-4	0.0849778	0.016912
chr20	47335957	47336057	7349304	0	-	0.39	(0.378,0.408]	chr20	749346	170	INTRON	INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000435836.5:ENST00000446894.5:ENST00000441977.1	protein_coding	protein_coding	protein_coding	protein_coding	8	158	2	2.27284	2.87964	3.48644	0.00173415	2.39366e-5	0.03851	0.00401973
chr15	90930355	90930452	6102355	0	+	0.515464	(0.515,0.57]	chr15	581184	1	SS5_PROX	SS5_PROX:INTRON	UNC45A	ENSG00000140553.18	ENST00000672480.1:ENST00000394275.7:ENST00000461266.5:ENST00000480470.5:ENST00000556319.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	52	2	2.6325	2.879565	3.12663	0.00439001	0.00374498	0.0585064	0.0562234
chr16	68024104	68024204	6369577	0	+	0.54	(0.515,0.57]	chr16	612062	1	SS5_PROX	SS5_PROX:INTRON	DUS2	ENSG00000167264.18	ENST00000571081.6:ENST00000570709.6:ENST00000575677.5:ENST00000576994.5:ENST00000566306.5:ENST00000358896.10:ENST00000564975.5:ENST00000568099.6:ENST00000565263.6:ENST00000567100.5:ENST00000432752.5:ENST00000569289.5:ENST00000564781.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	52	2	2.6325	2.879565	3.12663	0.00439001	0.00374498	0.0585064	0.0562234
chr7	880398	880496	3269147	0	+	0.438776	(0.408,0.44]	chr7	303674	17	INTRON	INTRON	SUN1:GET4	ENSG00000164828.18:ENSG00000239857.7	ENST00000457861.1:ENST00000265857.8:ENST00000412734.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	109	2	2.55902	2.879555	3.20009	7.64731e-4	4.59843e-4	0.0254338	0.01978
chr1	42955549	42955648	433115	0	-	0.444444	(0.44,0.476]	chr1	52506	8	INTRON	INTRON	SLC2A1	ENSG00000117394.24	ENST00000426263.10:ENST00000630287.2:ENST00000675112.1:ENST00000674765.1:ENST00000625233.2:ENST00000372500.4:ENST00000415851.6:ENST00000630821.1:ENST00000460369.3:ENST00000676097.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	196	2	2.15767	2.879485	3.6013	0.0017285	1.12479e-6	0.0374928	6.08877e-4
chr4	2507784	2507884	1912221	0	+	0.31	(0.28,0.32]	chr4	191953	67	INTRON	INTRON	RNF4	ENSG00000063978.16	ENST00000541204.5:ENST00000502316.5:ENST00000509388.5:ENST00000507247.5:ENST00000314289.13:ENST00000511843.5:ENST00000509258.5:ENST00000513284.5:ENST00000511859.5:ENST00000513643.5:ENST00000506706.5:ENST00000511600.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	10	232	2	2.79831	2.87948	2.96065	2.7488e-4	8.67155e-5	0.0151875	0.00783027
chr1	113075941	113076041	188121	0	+	0.48	(0.476,0.515]	chr1	20854	19	INTRON	INTRON	LRIG2	ENSG00000198799.12	ENST00000361127.6	protein_coding	protein_coding	protein_coding	protein_coding	4	79	2	2.58253	2.879405	3.17628	0.00600101	3.6008e-4	0.0674604	0.0169207
chr3	42036712	42036812	1403889	0	+	0.43	(0.408,0.44]	chr3	147497	222	INTRON	INTRON	TRAK1	ENSG00000182606.17	ENST00000487159.5:ENST00000672026.1:ENST00000673621.2	protein_coding	protein_coding	protein_coding	protein_coding	3	61	2	2.6117	2.8793800000000003	3.14706	0.00555224	0.00382411	0.0648867	0.0562562
chr1	193187511	193187611	285277	0	+	0.34	(0.32,0.35]	chr1	32823	4	INTRON	INTRON	CDC73	ENSG00000134371.14	ENST00000649895.1:ENST00000643006.1:ENST00000367435.5:ENST00000650197.1:ENST00000648071.1:ENST00000635846.1:ENST00000649613.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	30	2	1.81328	2.879285	3.94529	0.0693433	0.0615716	0.193423	0.184298
chr6	17690713	17690813	3066052	0	-	0.33	(0.32,0.35]	chr6	284872	17	INTRON	INTRON	NUP153	ENSG00000124789.12	ENST00000613258.4:ENST00000537253.5:ENST00000262077.3	protein_coding	protein_coding	protein_coding	protein_coding	2	30	2	1.81328	2.879285	3.94529	0.0693433	0.0615716	0.193423	0.184298
chr8	26300982	26301080	3716190	0	+	0.326531	(0.32,0.35]	chr8	345368	20	INTRON	INTRON	PPP2R2A	ENSG00000221914.11	ENST00000380737.8:ENST00000520329.5:ENST00000518254.5:ENST00000524169.5:ENST00000518397.5:ENST00000522535.5:ENST00000665949.1:ENST00000522150.5:ENST00000523473.5:ENST00000521095.5:ENST00000660435.1:ENST00000523925.5:ENST00000524099.5:ENST00000315985.7:ENST00000519636.5:ENST00000522482.5:ENST00000521557.5:ENST00000519439.5:ENST00000521484.5:ENST00000523964.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	30	2	1.81328	2.879285	3.94529	0.0693433	0.0615716	0.193423	0.184298
chr13	79399403	79399503	5626341	0	-	0.27	[0,0.28]	chr13	536667	201	INTRON	INTRON	RBM26	ENSG00000139746.16	ENST00000438737.3:ENST00000438724.5:ENST00000622611.4:ENST00000267229.11:ENST00000472143.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	102	2	2.48142	2.87925	3.27708	0.00517359	0.00375221	0.0631676	0.0562562
chr12	123586351	123586449	5243019	0	+	0.520408	(0.515,0.57]	chr12	498261	9	UTR5	UTR5:EXON_MRNA:SS3_PROX:INTRON	TMED2	ENSG00000086598.11	ENST00000438031.2:ENST00000543425.1:ENST00000262225.8:ENST00000544188.1:ENST00000509052.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	130	2	2.28656	2.87908	3.4716	3.59297e-4	7.76698e-5	0.0169207	0.00786812
chr1	230100331	230100431	334410	0	+	0.59	(0.57,1]	chr1	38930	84	INTRON	INTRON	GALNT2	ENSG00000143641.10	ENST00000494106.1:ENST00000366672.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	40	2	1.89351	2.879055	3.8646	0.0255126	8.0672e-5	0.133676	0.00804467
chr6	13660530	13660630	3058712	0	-	0.28	[0,0.28]	chr6	284542	13	INTRON	INTRON	RANBP9	ENSG00000010017.13	ENST00000011619.6	protein_coding	protein_coding	protein_coding	protein_coding	7	142	2	1.99816	2.8790199999999997	3.75988	0.00581682	9.5295e-4	0.0687084	0.0282335
chr10	74004660	74004760	4454566	0	+	0.4	(0.378,0.408]	chr10	411385	59	INTRON	INTRON	VCL	ENSG00000035403.18	ENST00000623461.3:ENST00000372755.7:ENST00000624354.3:ENST00000211998.10:ENST00000478896.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	61	2	2.70298	2.879	3.05502	0.00689519	0.00325723	0.0717484	0.0524329
chr1	220029098	220029197	639015	0	-	0.444444	(0.44,0.476]	chr1	75303	35	INTRON	INTRON	EPRS1	ENSG00000136628.18	ENST00000366923.8:ENST00000609181.5:ENST00000477030.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	46	2	2.29842	2.8789949999999997	3.45957	0.0552483	0.00106385	0.165463	0.0300133
chr1	1874768	1874868	362678	0	-	0.44	(0.408,0.44]	chr1	42311	347	INTRON	INTRON	GNB1	ENSG00000078369.18	ENST00000610897.4:ENST00000615252.4:ENST00000378609.9:ENST00000439272.6:ENST00000434686.6:ENST00000472614.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	132	2	2.66631	2.8789350000000002	3.09156	6.35449e-4	1.16526e-4	0.0231636	0.00929374
chr14	64791518	64791618	5910453	0	-	0.38	(0.378,0.408]	chr14	561436	4	SS5_PROX	SS5_PROX:INTRON	SPTB	ENSG00000070182.21	ENST00000644917.1:ENST00000389722.7:ENST00000389720.4	protein_coding	protein_coding	protein_coding	protein_coding	3	61	2	2.56408	2.87888	3.19368	0.00566993	0.00426861	0.0678837	0.0573912
chr4	1724859	1724956	1910166	0	+	0.453608	(0.44,0.476]	chr4	191575	6	INTRON	INTRON	TACC3	ENSG00000013810.21	ENST00000458173.4:ENST00000651472.1:ENST00000612220.5:ENST00000484651.5:ENST00000313288.9:ENST00000467746.6:ENST00000493975.5:ENST00000652770.1:ENST00000651251.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	82	2	2.00165	2.8788650000000002	3.75608	0.0109867	2.6487e-4	0.0873897	0.0144071
chr2	44225591	44225691	765134	0	+	0.33	(0.32,0.35]	chr2	86714	65	INTRON	INTRON	PPM1B	ENSG00000138032.21	ENST00000282412.9:ENST00000378540.8:ENST00000378551.6:ENST00000409432.7:ENST00000345249.8:ENST00000459690.5:ENST00000487286.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	83	2	2.14793	2.878805	3.60968	0.0110079	0.00105196	0.0927187	0.029592
chr8	102346725	102346802	4012091	0	-	0.402597	(0.378,0.408]	chr8	367213	4	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	UBR5	ENSG00000104517.13	ENST00000520539.6:ENST00000220959.8:ENST00000521922.5:ENST00000518145.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	15	283	2	2.67802	2.87872	3.07942	1.99036e-4	1.62412e-6	0.0129439	7.71833e-4
chr19	51582579	51582677	7093669	0	+	0.397959	(0.378,0.408]	chr19	711048	3	INTRON	INTRON	ZNF175	ENSG00000105497.8	ENST00000262259.7:ENST00000436511.2:ENST00000600460.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	62	2	2.11194	2.878615	3.64529	0.0292534	4.71767e-4	0.128055	0.0196294
chr6	28150780	28150874	2839415	0	+	0.382979	(0.378,0.408]	chr6	266523	8	INTRON	INTRON	ZKSCAN8	ENSG00000198315.11	ENST00000330236.7:ENST00000606198.5:ENST00000457389.6:ENST00000536028.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	62	2	2.11194	2.878615	3.64529	0.0292534	4.71767e-4	0.128055	0.0196294
chr5	32136086	32136186	2597132	0	-	0.51	(0.476,0.515]	chr5	246737	4	SS3_PROX	SS3_PROX:INTRON	GOLPH3	ENSG00000113384.14	ENST00000265070.7:ENST00000503610.5:ENST00000512668.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	60	2	2.82673	2.878595	2.93046	0.0134403	0.00118985	0.0946278	0.031662
chr16	31450755	31450852	6475251	0	-	0.43299	(0.408,0.44]	chr16	626084	6	INTRON	INTRON	ENSG00000261474	ENSG00000261474.1	ENST00000569291.1	lncRNA	lncRNA	lncRNA	lncRNA	3	37	2	1.53263	2.87855	4.22447	0.0733439	0.0161655	0.190051	0.109464
chr21	39312654	39312747	7465534	0	-	0.569892	(0.515,0.57]	chr21	760570	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	BRWD1	ENSG00000185658.14	ENST00000333229.6:ENST00000342449.8:ENST00000380800.7:ENST00000341322.4:ENST00000470108.5:ENST00000484090.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	14	201	2	2.69324	2.87839	3.06354	4.75317e-5	1.13116e-5	0.00594895	0.0024909
chr14	21254246	21254346	5835014	0	-	0.23	[0,0.28]	chr14	554460	3	SS5_PROX	SS5_PROX:INTRON	HNRNPC	ENSG00000092199.19	ENST00000336053.10:ENST00000553300.6:ENST00000554969.5:ENST00000556142.5:ENST00000554455.5:ENST00000430246.6:ENST00000553753.5:ENST00000555309.5:ENST00000555914.5:ENST00000557442.5:ENST00000556628.5:ENST00000556513.5:ENST00000555883.5:ENST00000557201.5:ENST00000556897.5:ENST00000420743.6:ENST00000554539.5:ENST00000554383.5:ENST00000555215.5:ENST00000555137.5:ENST00000554891.5:ENST00000556226.5:ENST00000555176.5:ENST00000553614.5:ENST00000557336.1:ENST00000557768.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	63	2	2.8569	2.87836	2.89982	0.0158893	0.013822	0.10247	0.101453
chr17	77094313	77094410	6678156	0	+	0.515464	(0.515,0.57]	chr17	652310	11	EXON_LNCRNA	EXON_LNCRNA:INTRON	SNHG20:SEC14L1	ENSG00000234912.12:ENSG00000129657.16	ENST00000564414.5:ENST00000568056.5:ENST00000647734.1:ENST00000434411.6:ENST00000649047.1:ENST00000649712.1:ENST00000650557.1:ENST00000647904.1:ENST00000648984.1:ENST00000392476.6:ENST00000589827.5:ENST00000561721.6:ENST00000561633.5:ENST00000564509.5:ENST00000565256.1:ENST00000566583.5:ENST00000648740.1:ENST00000569632.1:ENST00000430767.8	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	7	103	2	2.31075	2.878335	3.44592	0.00124389	8.97344e-5	0.0328153	0.00844245
chr3	179375741	179375841	1567221	0	+	0.39	(0.378,0.408]	chr3	162121	4	SS5_PROX	SS5_PROX:INTRON	MFN1	ENSG00000171109.19	ENST00000471841.6:ENST00000357390.8:ENST00000263969.9:ENST00000474903.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	62	2	2.47752	2.878295	3.27907	0.0092831	0.0023379	0.0817766	0.0442989
chr5	32154867	32154967	2597321	0	-	0.52	(0.515,0.57]	chr5	246744	106	INTRON	INTRON	GOLPH3	ENSG00000113384.14	ENST00000265070.7:ENST00000503610.5:ENST00000512668.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	143	2	2.64662	2.87824	3.10986	5.1273e-4	8.98023e-6	0.0208667	0.00215957
chr20	5603665	5603764	7312270	0	-	0.282828	(0.28,0.32]	chr20	744612	45	INTRON	INTRON	GPCPD1	ENSG00000125772.14	ENST00000379019.7:ENST00000481690.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	49	2	1.72287	2.8781600000000003	4.03345	0.0704058	0.0286502	0.184298	0.139456
chr13	27251950	27252050	5459377	0	+	0.48	(0.476,0.515]	chr13	523084	1	SS5_PROX	SS5_PROX:INTRON	RPL21	ENSG00000122026.11	ENST00000473558.5:ENST00000311549.11:ENST00000461690.5:ENST00000272274.8:ENST00000319826.8:ENST00000326092.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	60	2	2.26034	2.8781049999999997	3.49587	0.0166235	0.00120011	0.110511	0.0315806
chr3	184162304	184162404	1581695	0	+	0.51	(0.476,0.515]	chr3	163287	3	SS3_PROX	SS3_PROX:INTRON	DVL3	ENSG00000161202.20	ENST00000313143.9:ENST00000435708.6:ENST00000462665.5:ENST00000431765.6:ENST00000649364.1:ENST00000423300.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	60	2	2.26034	2.8781049999999997	3.49587	0.0166235	0.00120011	0.110511	0.0315806
chr3	195266418	195266517	1894146	0	-	0.494949	(0.476,0.515]	chr3	189521	65	INTRON	INTRON	XXYLT1	ENSG00000173950.16	ENST00000310380.11:ENST00000455281.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	60	2	2.26034	2.8781049999999997	3.49587	0.0166235	0.00120011	0.110511	0.0315806
chr9	125364034	125364133	4199314	0	+	0.414141	(0.408,0.44]	chr9	383314	14	UTR3	UTR3:EXON_MRNA	GAPVD1	ENSG00000165219.23	ENST00000297933.11:ENST00000470056.5:ENST00000394104.6	protein_coding	protein_coding	protein_coding	protein_coding	8	132	2	2.27926	2.878085	3.47691	9.96556e-4	1.1563e-4	0.0290732	0.00969484
chr18	9159428	9159528	6869157	0	+	0.52	(0.515,0.57]	chr18	680561	212	INTRON	INTRON	ANKRD12	ENSG00000101745.17	ENST00000585234.5:ENST00000262126.9:ENST00000577992.1:ENST00000540578.6:ENST00000581635.5:ENST00000400020.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	52	2	2.83501	2.8780799999999997	2.92115	0.0117686	0.00110258	0.0894475	0.03038
chr12	110500819	110500916	5409972	0	-	0.515464	(0.515,0.57]	chr12	516594	9	INTRON	INTRON	VPS29	ENSG00000111237.19	ENST00000549578.6:ENST00000360579.11:ENST00000621131.4:ENST00000447578.6:ENST00000546588.1:ENST00000549970.5:ENST00000548259.1:ENST00000553128.5:ENST00000551655.1:ENST00000550267.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	51	2	2.32967	2.878055	3.42644	0.0133671	0.00106731	0.0946278	0.0300133
chr6	34765744	34765842	2848308	0	+	0.459184	(0.44,0.476]	chr6	269095	27	INTRON	INTRON	SNRPC	ENSG00000124562.10	ENST00000244520.10:ENST00000374018.5:ENST00000374017.3:ENST00000474635.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	46	2	2.58033	2.878025	3.17572	0.0247511	0.00427037	0.131869	0.0573912
chr1	25487087	25487186	48518	0	+	0.343434	(0.32,0.35]	chr1	5963	9	INTRON	INTRON	MACO1	ENSG00000204178.11	ENST00000399766.7:ENST00000374343.5:ENST00000647928.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	51	2	2.84812	2.87799	2.90786	0.0147575	0.00993008	0.0983813	0.0877296
chr16	30237047	30237144	6472472	0	-	0.247423	[0,0.28]	chr16	625544	11	INTRON	INTRON	NPIPB13	ENSG00000198064.14	ENST00000520915.5:ENST00000618637.1:ENST00000568053.5:ENST00000564502.1:ENST00000564219.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	103	2	2.13176	2.877935	3.62411	0.0135097	0.00157815	0.101363	0.0362091
chr17	61783907	61784007	6808129	0	-	0.41	(0.408,0.44]	chr17	672563	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	BRIP1	ENSG00000136492.10	ENST00000259008.7:ENST00000682755.1:ENST00000682453.1:ENST00000683039.1:ENST00000682989.1:ENST00000682589.1:ENST00000683235.1:ENST00000682477.1:ENST00000684584.1:ENST00000682073.1:ENST00000577598.5:ENST00000682066.1:ENST00000584322.2:ENST00000683381.1:ENST00000579028.2:ENST00000682611.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	91	2	1.82275	2.87792	3.93309	0.0123226	1.78185e-4	0.097243	0.0121697
chr1	41228979	41229078	430697	0	-	0.474747	(0.44,0.476]	chr1	52255	424	INTRON	INTRON	SCMH1	ENSG00000010803.17	ENST00000695335.1:ENST00000372596.5:ENST00000372597.5:ENST00000337495.9:ENST00000488592.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	59	2	2.78129	2.8779	2.97451	0.00853825	0.00229634	0.0780043	0.0439319
chr5	111502388	111502488	2702699	0	-	0.46	(0.44,0.476]	chr5	254404	3	SS3_PROX	SS3_PROX:INTRON	STARD4	ENSG00000164211.13	ENST00000296632.8:ENST00000512160.5:ENST00000511137.5:ENST00000502931.5:ENST00000505803.5:ENST00000502322.5:ENST00000509887.5:ENST00000511569.5:ENST00000511436.5:ENST00000510346.5:ENST00000455172.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	59	2	2.78129	2.8779	2.97451	0.00853825	0.00229634	0.0780043	0.0439319
chr1	154972892	154972992	559834	0	-	0.37	(0.35,0.378]	chr1	66659	2	SS5_PROX	SS5_PROX:INTRON	SHC1	ENSG00000160691.19	ENST00000368450.5:ENST00000368453.8:ENST00000412170.5:ENST00000366442.2	protein_coding	protein_coding	protein_coding	protein_coding	4	77	2	2.5003	2.877895	3.25549	0.00363602	0.00256148	0.0535085	0.0466761
chr9	6506665	6506762	4099771	0	+	0.360825	(0.35,0.378]	chr9	373631	6	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	UHRF2	ENSG00000147854.17	ENST00000468435.6:ENST00000276893.10:ENST00000485617.6:ENST00000492853.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	77	2	2.5003	2.877895	3.25549	0.00363602	0.00256148	0.0535085	0.0466761
chr17	78186197	78186286	6844676	0	-	0.41573	(0.408,0.44]	chr17	677231	7	INTRON	INTRON	TK1	ENSG00000167900.12	ENST00000301634.12:ENST00000588734.5:ENST00000590862.5:ENST00000590430.5:ENST00000586613.1:ENST00000592126.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	112	2	2.565	2.877825	3.19065	0.00103673	3.2984e-4	0.0292734	0.0161352
chr4	70930730	70930830	1970789	0	+	0.32	(0.28,0.32]	chr4	197571	278	INTRON	INTRON	MOB1B	ENSG00000173542.9	ENST00000502869.5:ENST00000509041.5:ENST00000309395.7:ENST00000396051.2:ENST00000511449.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	115	2	2.26355	2.877765	3.49198	0.00229405	0.00195595	0.0439319	0.0400756
chr2	86964803	86964901	824650	0	+	0.479592	(0.476,0.515]	chr2	92143	12	INTRON	INTRON	RGPD1	ENSG00000187627.17	ENST00000409776.6:ENST00000398193.8:ENST00000641458.2	protein_coding	protein_coding	protein_coding	protein_coding	3	59	2	2.45598	2.8776849999999996	3.29939	0.00945755	0.00211868	0.0817766	0.0425644
chr5	146215691	146215791	2514235	0	+	0.37	(0.35,0.378]	chr5	240152	115	INTRON	INTRON	ENSG00000275740:RBM27	ENSG00000275740.1:ENSG00000091009.8	ENST00000506502.2:ENST00000265271.7	protein_coding	protein_coding	protein_coding	protein_coding	2	48	2	2.53856	2.877665	3.21677	0.0326077	0.00313804	0.133687	0.0514466
chr15	88899911	88900011	6256697	0	-	0.48	(0.476,0.515]	chr15	596860	1	SS3_PROX	SS3_PROX:INTRON	MFGE8	ENSG00000140545.16	ENST00000268150.13:ENST00000558018.5:ENST00000558029.6:ENST00000695566.1:ENST00000268151.11:ENST00000566497.5:ENST00000695774.1:ENST00000560937.1:ENST00000542878.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	45	2	2.65268	2.87766	3.10264	0.0201975	0.00543163	0.121243	0.0645052
chr9	128071877	128071977	4202468	0	+	0.48	(0.476,0.515]	chr9	383913	29	INTRON	INTRON	SLC25A25	ENSG00000148339.13	ENST00000373068.6:ENST00000373069.10	protein_coding	protein_coding	protein_coding	protein_coding	2	45	2	2.65268	2.87766	3.10264	0.0201975	0.00543163	0.121243	0.0645052
chr12	132998140	132998240	5252212	0	+	0.45	(0.44,0.476]	chr12	499627	100	INTRON	INTRON	ZNF26	ENSG00000198393.8	ENST00000537956.1:ENST00000328654.10:ENST00000545101.1:ENST00000540238.5:ENST00000544181.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	59	2	2.44514	2.877625	3.31011	0.0087381	0.00259023	0.0845538	0.0452934
chr9	137637401	137637501	4223656	0	+	0.45	(0.44,0.476]	chr9	388154	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	EHMT1	ENSG00000181090.21	ENST00000462484.5:ENST00000371394.6:ENST00000630754.2:ENST00000460843.6:ENST00000626216.2:ENST00000637593.1:ENST00000629335.2:ENST00000637335.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	10	171	2	2.28497	2.8775899999999996	3.47021	9.21308e-4	1.14089e-5	0.0278396	0.00249332
chr3	23842387	23842487	1388094	0	+	0.44	(0.408,0.44]	chr3	145385	305	INTRON	INTRON	UBE2E1	ENSG00000170142.12	ENST00000306627.8:ENST00000346855.7:ENST00000495141.5:ENST00000442670.5:ENST00000424381.5:ENST00000467766.5:ENST00000475680.5:ENST00000452012.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	9	160	2	2.37911	2.8774949999999997	3.37588	8.64728e-4	2.08728e-5	0.0268667	0.00353198
chr18	46823169	46823269	6965773	0	-	0.4	(0.378,0.408]	chr18	689456	17	INTRON	INTRON	PIAS2	ENSG00000078043.16	ENST00000585916.6:ENST00000398654.7:ENST00000324794.11:ENST00000545673.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	99	2	2.53753	2.8774249999999997	3.21732	0.00271682	2.98082e-4	0.0467523	0.015483
chrX	154091281	154091381	7913034	0	-	0.35	(0.32,0.35]	chrX	805640	1	SS3_PROX	SS3_PROX:INTRON	MECP2	ENSG00000169057.24	ENST00000303391.11:ENST00000453960.7:ENST00000628176.2:ENST00000407218.5:ENST00000369957.5:ENST00000631210.1:ENST00000496908.5:ENST00000415944.3:ENST00000630151.2:ENST00000676382.1:ENST00000611468.2:ENST00000637533.1:ENST00000675526.1:ENST00000637791.1:ENST00000675841.1:ENST00000674996.1:ENST00000627864.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	83	2	2.03198	2.87737	3.72276	0.0193728	3.96144e-4	0.108916	0.0178616
chr6	83192187	83192278	3145878	0	-	0.626374	(0.57,1]	chr6	293332	5	INTRON	INTRON	PGM3	ENSG00000013375.16	ENST00000513973.6:ENST00000512866.5:ENST00000650640.1:ENST00000616566.5:ENST00000283977.9:ENST00000651425.1:ENST00000650642.1:ENST00000506587.5:ENST00000509219.2:ENST00000652468.1:ENST00000510258.1:ENST00000505470.5:ENST00000507554.1:ENST00000508748.5:ENST00000503094.1:ENST00000515333.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	94	2	2.85199	2.87736	2.90273	9.50812e-5	9.77255e-6	0.0086994	0.00227114
chr7	131488024	131488123	3418071	0	+	0.272727	[0,0.28]	chr7	319295	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	MKLN1	ENSG00000128585.18	ENST00000352689.11:ENST00000498778.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	103	2	1.91746	2.877305	3.83715	0.0323084	3.63888e-4	0.132921	0.0170637
chr7	66550384	66550484	3539690	0	-	0.47	(0.44,0.476]	chr7	330242	43	INTRON	INTRON	RABGEF1P1	ENSG00000229180.8	ENST00000639011.1:ENST00000692299.1:ENST00000686269.1:ENST00000649635.1:ENST00000686397.1:ENST00000690339.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	8	112	2	1.92339	2.877045	3.8307	0.00506144	1.81621e-4	0.0621733	0.0117212
chr20	50598901	50599000	7354500	0	-	0.353535	(0.35,0.378]	chr20	750001	8	INTRON	INTRON	RIPOR3	ENSG00000042062.13	ENST00000327979.8:ENST00000045083.6:ENST00000462493.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	13	253	2	2.43694	2.8768399999999996	3.31674	3.9133e-4	3.91566e-6	0.0184748	0.00131367
chr3	9434112	9434181	1359267	0	+	0.376812	(0.35,0.378]	chr3	142716	2	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SETD5	ENSG00000168137.20	ENST00000402198.7:ENST00000431285.5:ENST00000682536.1:ENST00000663774.1:ENST00000665872.1:ENST00000666307.1:ENST00000693430.1:ENST00000691925.1:ENST00000684606.1:ENST00000691175.1:ENST00000688835.1:ENST00000443339.5:ENST00000406341.5:ENST00000670063.1:ENST00000684055.1:ENST00000407969.5:ENST00000490791.5:ENST00000692920.1:ENST00000493918.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	14	207	2	2.20661	2.876825	3.54704	2.95414e-4	1.01254e-4	0.0153769	0.00906611
chr7	129053255	129053354	3636565	0	-	0.494949	(0.476,0.515]	chr7	338148	112	INTRON	INTRON	TNPO3	ENSG00000064419.14	ENST00000627585.2:ENST00000265388.10:ENST00000471234.5:ENST00000482320.5:ENST00000471166.1	protein_coding	protein_coding	protein_coding	protein_coding	13	235	2	2.77388	2.8768200000000004	2.97976	3.321e-5	2.75667e-5	0.00461719	0.00430942
chr12	54293681	54293781	5330919	0	-	0.51	(0.476,0.515]	chr12	508647	3	SS3_PROX	SS3_PROX:INTRON	NFE2	ENSG00000123405.14	ENST00000435572.7:ENST00000312156.8:ENST00000540264.2:ENST00000553070.5:ENST00000553198.1	protein_coding	protein_coding	protein_coding	protein_coding	3	59	2	2.37731	2.876815	3.37632	0.0111793	0.00195267	0.0937192	0.0400465
chr14	91054551	91054650	5953841	0	-	0.494949	(0.476,0.515]	chr14	565178	17	INTRON	INTRON	RPS6KA5	ENSG00000100784.12	ENST00000614987.5:ENST00000648062.1:ENST00000536315.6:ENST00000418736.6:ENST00000554206.1:ENST00000556594.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	59	2	2.37731	2.876815	3.37632	0.0111793	0.00195267	0.0937192	0.0400465
chr7	77712233	77712333	3343227	0	+	0.29	(0.28,0.32]	chr7	311432	145	INTRON	INTRON	RSBN1L	ENSG00000187257.16	ENST00000334955.13:ENST00000445288.5	protein_coding	protein_coding	protein_coding	protein_coding	4	89	2	2.35314	2.876775	3.40041	0.00539714	0.00273088	0.066545000000000007	0.0467642
chr1	21781057	21781157	396849	0	-	0.37	(0.35,0.378]	chr1	47345	229	INTRON	INTRON	USP48	ENSG00000090686.16	ENST00000400301.5:ENST00000308271.14:ENST00000529637.5:ENST00000421625.6:ENST00000527823.5:ENST00000532737.1:ENST00000489108.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	106	2	2.62446	2.876755	3.12905	0.00566312	2.95089e-4	0.0653997	0.0153633
chr17	42476238	42476338	6611465	0	+	0.36	(0.35,0.378]	chr17	644092	49	INTRON	INTRON	ATP6V0A1	ENSG00000033627.17	ENST00000393829.6:ENST00000343619.9:ENST00000537728.5:ENST00000588901.5:ENST00000264649.10:ENST00000585525.5:ENST00000544137.5:ENST00000589727.5:ENST00000592324.1:ENST00000587375.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	132	2	2.30106	2.8767300000000002	3.4524	0.0015939	1.6322e-4	0.0367961	0.0116917
chr3	47642168	47642267	1683651	0	-	0.30303	(0.28,0.32]	chr3	171996	30	INTRON	INTRON	SMARCC1	ENSG00000173473.11	ENST00000254480.10:ENST00000425518.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	55	2	2.78004	2.876685	2.97333	0.0193244	0.00857834	0.108861	0.083729
chr12	50416245	50416345	5136489	0	+	0.46	(0.44,0.476]	chr12	484364	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	LARP4	ENSG00000161813.23	ENST00000550522.5:ENST00000293618.12:ENST00000429001.7:ENST00000398473.7:ENST00000548174.5:ENST00000548697.5:ENST00000548993.5:ENST00000522085.5:ENST00000518444.5:ENST00000551886.5:ENST00000523389.5:ENST00000518561.5:ENST00000347328.9:ENST00000550260.1:ENST00000517559.5:ENST00000552445.1	protein_coding	protein_coding	protein_coding	protein_coding	2	44	2	2.60774	2.876665	3.14559	0.0255874	0.00384923	0.120269	0.0562562
chr20	62902825	62902924	7362209	0	-	0.363636	(0.35,0.378]	chr20	751176	55	INTRON	INTRON	DIDO1	ENSG00000101191.17	ENST00000266070.8:ENST00000395343.6:ENST00000395340.5	protein_coding	protein_coding	protein_coding	protein_coding	3	40	2	1.56287	2.876545	4.19022	0.0697648	0.0209891	0.184298	0.122348
chr5	90693086	90693186	2421774	0	+	0.37	(0.35,0.378]	chr5	232952	3	SS5_PROX	SS5_PROX:INTRON	ADGRV1	ENSG00000164199.18	ENST00000405460.9:ENST00000640403.1:ENST00000639473.1:ENST00000639431.1:ENST00000640779.1:ENST00000640012.1:ENST00000640374.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	105	2	2.5337	2.8765400000000003	3.21938	0.0022093	4.98221e-4	0.0435144	0.0206993
chr5	138568122	138568222	2732833	0	-	0.54	(0.515,0.57]	chr5	257472	4	SS3_PROX	SS3_PROX:INTRON	HSPA9	ENSG00000113013.16	ENST00000677693.1:ENST00000677064.1:ENST00000678300.1:ENST00000677425.1:ENST00000649578.2:ENST00000677988.1:ENST00000297185.9:ENST00000677527.1:ENST00000678794.1:ENST00000677553.1:ENST00000678384.1:ENST00000678051.1:ENST00000677066.1:ENST00000649692.2:ENST00000678551.1:ENST00000524109.2:ENST00000507115.6:ENST00000507097.5:ENST00000504902.6:ENST00000508003.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	78	2	1.68236	2.87652	4.07068	0.0211981	3.78716e-5	0.113017	0.00493296
chr4	707665	707765	1907806	0	+	0.64	(0.57,1]	chr4	191202	13	INTRON	INTRON	PCGF3	ENSG00000185619.18	ENST00000419774.5:ENST00000362003.9:ENST00000475288.5:ENST00000470161.6:ENST00000427463.5:ENST00000482726.5:ENST00000400151.6:ENST00000430644.5:ENST00000484141.5:ENST00000440452.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	32	2	2.56996	2.87648	3.183	0.00499145	0.00254356	0.0646039	0.0448135
chr1	193230102	193230201	285707	0	+	0.424242	(0.408,0.44]	chr1	32840	173	INTRON	INTRON	CDC73	ENSG00000134371.14	ENST00000649895.1:ENST00000643006.1:ENST00000367435.5:ENST00000650197.1:ENST00000648071.1:ENST00000635846.1:ENST00000649613.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	121	2	2.36243	2.87642	3.39041	0.00107664	1.80518e-4	0.0300133	0.0121877
chr11	66111645	66111744	4808284	0	+	0.464646	(0.44,0.476]	chr11	447339	104	INTRON	INTRON	PACS1	ENSG00000175115.13	ENST00000320580.9:ENST00000527224.1:ENST00000533756.5:ENST00000527380.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	44	2	2.86231	2.87639	2.89047	0.012214	0.00955699	0.0910127	0.0863913
chr7	87153827	87153927	3345630	0	+	0.27	[0,0.28]	chr7	311615	2	SS3_PROX	SS3_PROX:INTRON	DMTF1	ENSG00000135164.19	ENST00000413276.6:ENST00000447863.5:ENST00000579677.5:ENST00000425406.5:ENST00000446796.6:ENST00000420131.5:ENST00000414630.6:ENST00000547146.6:ENST00000579850.5:ENST00000453049.5:ENST00000331242.12:ENST00000430405.7:ENST00000449088.7:ENST00000448598.5:ENST00000428819.5:ENST00000432937.6:ENST00000584619.5:ENST00000432366.6:ENST00000423590.6:ENST00000394703.9:ENST00000584457.5:ENST00000580710.5:ENST00000579592.5:ENST00000434534.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	176	2	2.44313	2.876335	3.30954	0.00124757	6.69788e-4	0.0328543	0.0236302
chr1	41182334	41182433	430227	0	-	0.262626	[0,0.28]	chr1	52248	195	INTRON	INTRON	SCMH1	ENSG00000010803.17	ENST00000695335.1:ENST00000372596.5:ENST00000372597.5:ENST00000337495.9:ENST00000695336.1	protein_coding	protein_coding	protein_coding	protein_coding	3	87	2	1.94204	2.8763	3.81056	0.0544139	4.09492e-4	0.164972	0.0181306
chr18	80120442	80120542	6938202	0	+	0.39	(0.378,0.408]	chr18	686196	24	INTRON	INTRON	ADNP2	ENSG00000101544.9	ENST00000262198.9:ENST00000560752.5:ENST00000559951.5:ENST00000560561.1:ENST00000561195.1	protein_coding	protein_coding	protein_coding	protein_coding	6	93	2	2.10836	2.8762749999999997	3.64419	0.00375851	7.25777e-4	0.0562562	0.0247646
chr22	19491842	19491941	7476955	0	+	0.565657	(0.515,0.57]	chr22	762407	75	INTRON	INTRON	CDC45	ENSG00000093009.11	ENST00000407835.6:ENST00000437685.6:ENST00000483431.5:ENST00000438587.6:ENST00000672837.1:ENST00000263201.7:ENST00000404724.7:ENST00000487669.5:ENST00000428937.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	63	2	2.4386	2.87624	3.31388	0.00326739	0.00174704	0.0508595	0.0386026
chr1	220042857	220042957	639157	0	-	0.44	(0.408,0.44]	chr1	75333	22	INTRON	INTRON	EPRS1	ENSG00000136628.18	ENST00000366923.8:ENST00000609181.5:ENST00000477030.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	33	2	1.6306	2.8762350000000003	4.12187	0.0544158	0.0354689	0.182272	0.137535
chr1	160320557	160320656	572085	0	-	0.363636	(0.35,0.378]	chr1	69341	61	INTRON	INTRON	COPA	ENSG00000122218.17	ENST00000241704.8:ENST00000696204.1:ENST00000696203.1:ENST00000696202.1:ENST00000649963.1:ENST00000696208.1:ENST00000696207.1:ENST00000696206.1:ENST00000649676.1:ENST00000368069.7:ENST00000647693.1:ENST00000649787.1:ENST00000650154.1:ENST00000647799.1:ENST00000648805.1:ENST00000647683.1:ENST00000649231.1:ENST00000648501.1:ENST00000696209.1:ENST00000696210.1:ENST00000696211.1:ENST00000647899.1:ENST00000696212.1:ENST00000696214.1:ENST00000696213.1:ENST00000696215.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	64	2	2.76192	2.8761799999999997	2.99044	0.00894806	0.00265021	0.0799922	0.0474328
chr16	85609609	85609709	6415928	0	+	0.43	(0.408,0.44]	chr16	615470	529	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	13	206	2	1.97762	2.876175	3.77473	0.00142446	3.6094e-6	0.0347093	0.0013551
chr20	38952910	38953008	7272691	0	+	0.357143	(0.35,0.378]	chr20	739071	5	UTR3	UTR3:EXON_MRNA	FAM83D	ENSG00000101447.15	ENST00000619304.4:ENST00000619850.2	protein_coding	protein_coding	protein_coding	protein_coding	3	64	2	2.49643	2.87596	3.25549	0.00752974	0.00363602	0.0773151	0.0535085
chr19	18833283	18833383	7033333	0	+	0.39	(0.378,0.408]	chr19	700968	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	UPF1	ENSG00000005007.13	ENST00000262803.10:ENST00000599848.5:ENST00000601981.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	82	2	2.76893	2.87594	2.98295	0.00316735	9.47389e-4	0.0503085	0.0282007
chr16	3874045	3874145	6436021	0	-	0.48	(0.476,0.515]	chr16	619582	227	INTRON	INTRON	CREBBP	ENSG00000005339.15	ENST00000262367.10:ENST00000382070.7	protein_coding	protein_coding	protein_coding	protein_coding	3	33	2	1.61586	2.8758600000000003	4.13586	0.0567093	0.031846	0.185107	0.13151
chr16	71802407	71802507	6514413	0	-	0.55	(0.515,0.57]	chr16	631208	126	INTRON	INTRON	AP1G1	ENSG00000166747.13	ENST00000299980.9:ENST00000569748.5:ENST00000393512.7:ENST00000565009.5:ENST00000568327.5:ENST00000450149.6:ENST00000563259.5:ENST00000563104.5:ENST00000569185.5:ENST00000566161.5:ENST00000567583.1:ENST00000565412.5:ENST00000569975.5:ENST00000570297.5:ENST00000570017.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	51	2	2.43783	2.875855	3.31388	0.00916404	0.00174704	0.0812949	0.0386026
chrX	149953249	149953348	7730420	0	+	0.414141	(0.408,0.44]	chrX	791129	3	INTRON	INTRON	EOLA2-DT	ENSG00000235703.7	ENST00000670799.1:ENST00000654890.1:ENST00000449111.5:ENST00000444489.5:ENST00000669126.1:ENST00000452864.2:ENST00000671125.1	lncRNA	lncRNA	lncRNA	lncRNA	3	59	2	2.69457	2.87581	3.05705	0.00658331	0.00331036	0.0701901	0.0527031
chr19	39453521	39453621	7067939	0	+	0.49	(0.476,0.515]	chr19	705818	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	SUPT5H	ENSG00000196235.14	ENST00000599117.5:ENST00000402194.6:ENST00000601515.5:ENST00000432763.7:ENST00000595368.5:ENST00000594729.5:ENST00000601978.1:ENST00000359191.10:ENST00000598725.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	44	2	2.56033	2.87576	3.19119	0.0287634	0.00325748	0.127066	0.0524329
chr2	101295581	101295681	1199418	0	-	0.54	(0.515,0.57]	chr2	128178	4	SS3_PROX	SS3_PROX:INTRON	RNF149	ENSG00000163162.9	ENST00000424632.5:ENST00000295317.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	61	2	2.496	2.8757349999999997	3.25547	0.00261721	0.00225531	0.0455413	0.0436331
chr3	25759294	25759393	1642598	0	-	0.222222	[0,0.28]	chr3	168666	77	INTRON	INTRON	NGLY1	ENSG00000151092.18	ENST00000280700.10:ENST00000428257.5:ENST00000675217.1:ENST00000676225.1:ENST00000493324.5:ENST00000396649.7:ENST00000308710.9:ENST00000280699.13:ENST00000674841.1:ENST00000675234.1:ENST00000463611.2:ENST00000417874.6:ENST00000427041.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	65	2	2.27119	2.87572	3.48025	0.070351	0.00162172	0.184298	0.0369782
chrX	53679149	53679248	7821834	0	-	0.272727	[0,0.28]	chrX	798234	247	INTRON	INTRON	HUWE1	ENSG00000086758.16	ENST00000262854.11:ENST00000342160.7:ENST00000218328.12:ENST00000446750.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	65	2	2.27119	2.87572	3.48025	0.070351	0.00162172	0.184298	0.0369782
chr22	26582174	26582274	7564989	0	-	0.51	(0.476,0.515]	chr22	774054	166	INTRON	INTRON	TPST2	ENSG00000128294.16	ENST00000338754.9:ENST00000403880.5:ENST00000442495.5:ENST00000440953.5:ENST00000450022.1	protein_coding	protein_coding	protein_coding	protein_coding	8	145	2	2.58108	2.8756950000000003	3.17031	4.74145e-4	7.50511e-5	0.0201638	0.007252
chr2	169806113	169806213	908069	0	+	0.5	(0.476,0.515]	chr2	100182	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	SSB	ENSG00000138385.16	ENST00000422006.5:ENST00000260956.9:ENST00000417292.5:ENST00000413002.5:ENST00000409333.1:ENST00000468600.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	120	2	2.08673	2.87569	3.66465	0.00486567	2.31905e-5	0.0607461	0.00377084
chr2	10446523	10446618	1065084	0	-	0.326316	(0.32,0.35]	chr2	113664	9	INTRON	INTRON	ODC1	ENSG00000115758.13	ENST00000234111.9:ENST00000405333.5:ENST00000446285.5:ENST00000443218.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	73	2	2.78391	2.875685	2.96746	0.00815799	0.00347285	0.0810802	0.052042
chr7	10533605	10533705	3482115	0	-	0.59	(0.57,1]	chr7	325766	805	INTRON	INTRON	MGC4859	ENSG00000283117.1	ENST00000634803.1	lncRNA	lncRNA	lncRNA	lncRNA	6	60	2	2.7621000000000002	2.875565	2.98903	5.29607e-4	1.36729e-4	0.0207276	0.0106727
chrX	134382556	134382656	7723592	0	+	0.42	(0.408,0.44]	chrX	790098	3	SS3_PROX	SS3_PROX:INTRON	PHF6	ENSG00000156531.18	ENST00000685047.1:ENST00000687496.1:ENST00000685553.1:ENST00000625464.2:ENST00000370803.8:ENST00000332070.7:ENST00000370799.5:ENST00000691812.1:ENST00000688598.1:ENST00000693759.1:ENST00000687834.1:ENST00000370800.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	45	2	2.74518	2.875565	3.00595	0.0152229	0.00781452	0.108535	0.0759016
chr22	50520686	50520779	7545373	0	+	0.516129	(0.515,0.57]	chr22	771191	4	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	NCAPH2	ENSG00000025770.19	ENST00000420993.7:ENST00000395701.7:ENST00000523045.5:ENST00000299821.15:ENST00000520297.5:ENST00000522048.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	61	2	2.17039	2.875515	3.58064	0.00900252	6.54693e-4	0.0851009	0.0233335
chr6	136286051	136286150	3231090	0	-	0.424242	(0.408,0.44]	chr6	300408	30	INTRON	INTRON	BCLAF1	ENSG00000029363.17	ENST00000640069.1:ENST00000531224.6:ENST00000353331.8:ENST00000527536.5:ENST00000527613.5:ENST00000530767.5:ENST00000527759.5:ENST00000534269.5:ENST00000532384.5:ENST00000530429.5:ENST00000628517.2:ENST00000529826.5:ENST00000528229.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	14	255	2	2.70243	2.875495	3.04856	9.93656e-5	4.85816e-6	0.00902913	0.0015023
chr14	31018629	31018728	5857796	0	-	0.383838	(0.378,0.408]	chr14	556512	35	INTRON	INTRON	STRN3	ENSG00000196792.12	ENST00000355683.9:ENST00000357479.10:ENST00000555358.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	157	2	2.44238	2.87547	3.30856	0.0019351	9.44246e-6	0.0399069	0.00222322
chr1	246625519	246625618	350578	0	+	0.50505	(0.476,0.515]	chr1	40508	35	INTRON	INTRON	CNST	ENSG00000162852.14	ENST00000483271.1:ENST00000366513.9:ENST00000366512.7:ENST00000366511.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	44	2	2.80729	2.875395	2.9435	0.0126008	0.00929849	0.0980703	0.0817766
chr10	95263063	95263163	4666398	0	-	0.48	(0.476,0.515]	chr10	430122	153	INTRON	INTRON	PDLIM1	ENSG00000107438.9	ENST00000329399.7:ENST00000477757.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	44	2	2.80729	2.875395	2.9435	0.0126008	0.00929849	0.0980703	0.0817766
chr11	62869944	62870044	4799466	0	+	0.51	(0.476,0.515]	chr11	444781	131	INTRON	INTRON	SLC3A2	ENSG00000168003.18	ENST00000680729.1:ENST00000680002.1:ENST00000681467.1:ENST00000377890.6:ENST00000538084.2:ENST00000681569.1:ENST00000680725.1:ENST00000377891.6:ENST00000377889.6:ENST00000681215.1:ENST00000535296.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	44	2	2.80729	2.875395	2.9435	0.0126008	0.00929849	0.0980703	0.0817766
chr12	22675446	22675545	5095258	0	+	0.50505	(0.476,0.515]	chr12	481274	14	INTRON	INTRON	ETNK1	ENSG00000139163.16	ENST00000671733.1:ENST00000266517.9:ENST00000538218.2:ENST00000673406.1:ENST00000673188.1:ENST00000544191.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	44	2	2.80729	2.875395	2.9435	0.0126008	0.00929849	0.0980703	0.0817766
chr12	115961898	115961989	5422350	0	-	0.505495	(0.476,0.515]	chr12	518128	1	INTRON	INTRON	MED13L	ENSG00000123066.9	ENST00000281928.9:ENST00000648762.1:ENST00000648379.1:ENST00000650226.1:ENST00000649607.1:ENST00000648737.1:ENST00000649775.1:ENST00000648825.1:ENST00000649937.1:ENST00000548784.2:ENST00000648916.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	44	2	2.80729	2.875395	2.9435	0.0126008	0.00929849	0.0980703	0.0817766
chr7	2368115	2368210	3269766	0	+	0.484211	(0.476,0.515]	chr7	303838	7	INTRON	INTRON	EIF3B	ENSG00000106263.19	ENST00000360876.9:ENST00000397011.2:ENST00000466199.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	11	184	2	2.66806	2.87537	3.08268	1.82084e-4	4.22993e-5	0.0122264	0.00526976
chr5	83068585	83068684	2666612	0	-	0.40404	(0.378,0.408]	chr5	252493	31	INTRON	INTRON	TMEM167A	ENSG00000174695.10	ENST00000502346.2:ENST00000511450.5:ENST00000504622.5:ENST00000509770.1:ENST00000503892.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	74	2	2.06535	2.87526	3.68517	0.0159849	3.90172e-4	0.101453	0.0177751
chr8	47899336	47899425	3945122	0	-	0.47191	(0.44,0.476]	chr8	361835	4	INTRON	INTRON	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7	protein_coding	protein_coding	protein_coding	protein_coding	8	146	2	2.45747	2.87526	3.29305	6.55527e-4	6.05237e-5	0.0232396	0.00683137
chr4	110178463	110178563	2227533	0	-	0.52	(0.515,0.57]	chr4	218024	725	INTRON	INTRON	ELOVL6	ENSG00000170522.10	ENST00000394607.7:ENST00000302274.8:ENST00000514184.5:ENST00000506625.5:ENST00000506461.1:ENST00000503885.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	68	2	2.82994	2.875195	2.92045	0.00168661	0.00128922	0.0381778	0.0328334
chr1	38858624	38858719	427482	0	-	0.526316	(0.515,0.57]	chr1	51849	12	INTRON	INTRON	RRAGC	ENSG00000116954.8	ENST00000373001.4	protein_coding	protein_coding	protein_coding	protein_coding	2	38	2	2.76354	2.875155	2.98677	0.0147344	0.00632549	0.0983813	0.0722266
chr1	156223145	156223245	230998	0	+	0.54	(0.515,0.57]	chr1	27266	4	SS3_PROX	SS3_PROX:INTRON	PMF1	ENSG00000160783.19	ENST00000368279.7:ENST00000466489.1:ENST00000368273.8:ENST00000368277.3:ENST00000606952.5:ENST00000497069.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	38	2	2.76354	2.875155	2.98677	0.0147344	0.00632549	0.0983813	0.0722266
chr3	129255177	129255274	1499188	0	+	0.546392	(0.515,0.57]	chr3	156562	1	SS5_PROX	SS5_PROX:INTRON	COPG1	ENSG00000181789.14	ENST00000314797.10:ENST00000515725.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	38	2	2.76354	2.875155	2.98677	0.0147344	0.00632549	0.0983813	0.0722266
chr3	155762816	155762916	1843562	0	-	0.52	(0.515,0.57]	chr3	185486	3	UTR3	UTR3:EXON_MRNA	C3orf33	ENSG00000174928.16	ENST00000340171.7:ENST00000482061.6:ENST00000534941.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	38	2	2.76354	2.875155	2.98677	0.0147344	0.00632549	0.0983813	0.0722266
chr7	121244738	121244838	3396218	0	+	0.42	(0.408,0.44]	chr7	317792	4	SS5_PROX	SS5_PROX:INTRON	CPED1	ENSG00000106034.18	ENST00000310396.10:ENST00000450913.6:ENST00000423795.5:ENST00000466055.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	126	2	1.63738	2.87515	4.11292	0.00771981	7.24958e-5	0.078506	0.00767535
chr14	74106524	74106624	5787510	0	+	0.4	(0.378,0.408]	chr14	548346	49	INTRON	INTRON	LIN52	ENSG00000205659.12	ENST00000555028.7:ENST00000554938.2:ENST00000553404.5:ENST00000554076.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	66	2	2.04292	2.875105	3.70729	0.0326035	5.5156e-4	0.145164	0.0216014
chr19	21755264	21755363	7159182	0	-	0.393939	(0.378,0.408]	chr19	723737	13	INTRON	INTRON	ZNF100	ENSG00000197020.12	ENST00000358296.11:ENST00000598026.1:ENST00000596452.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	99	2	2.56413	2.875105	3.18608	0.0024299	3.50013e-4	0.0444645	0.0166791
chr1	90935307	90935407	501654	0	-	0.33	(0.32,0.35]	chr1	59480	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ZNF644	ENSG00000122482.22	ENST00000370440.5:ENST00000337393.10:ENST00000347275.9:ENST00000361321.5:ENST00000467231.5:ENST00000479798.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	68	2	2.58753	2.87495	3.16237	0.00560122	0.00550276	0.0678837	0.0648867
chr10	21698816	21698916	4406078	0	+	0.33	(0.32,0.35]	chr10	406537	18	INTRON	INTRON	MLLT10	ENSG00000078403.17	ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000651298.1:ENST00000377059.7:ENST00000651382.1:ENST00000438473.6:ENST00000420525.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	68	2	2.58753	2.87495	3.16237	0.00560122	0.00550276	0.0678837	0.0648867
chr13	98569794	98569894	5643720	0	-	0.33	(0.32,0.35]	chr13	537505	479	INTRON	INTRON	STK24	ENSG00000102572.15	ENST00000539966.6:ENST00000397517.6:ENST00000491878.5:ENST00000481288.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	68	2	2.58753	2.87495	3.16237	0.00560122	0.00550276	0.0678837	0.0648867
chr19	15354435	15354531	7147443	0	-	0.34375	(0.32,0.35]	chr19	721977	12	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	AKAP8	ENSG00000105127.10	ENST00000269701.7:ENST00000680461.1:ENST00000681812.1:ENST00000680336.1:ENST00000680245.1:ENST00000681018.1:ENST00000679798.1:ENST00000680199.1:ENST00000598597.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	68	2	2.58753	2.87495	3.16237	0.00560122	0.00550276	0.0678837	0.0648867
chr2	172581690	172581789	920163	0	+	0.30303	(0.28,0.32]	chr2	101374	105	INTRON	INTRON	PDK1	ENSG00000152256.14	ENST00000392571.6:ENST00000410055.5:ENST00000282077.8:ENST00000466437.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	110	2	2.05458	2.87481	3.69504	0.0381508	3.39708e-5	0.141764	0.0046443
chr22	47712638	47712738	7540174	0	+	0.23	[0,0.28]	chr22	770719	15	INTRON	INTRON	ENSG00000224271	ENSG00000224271.7	ENST00000664761.1:ENST00000651071.1:ENST00000650683.1:ENST00000651536.1:ENST00000652499.1:ENST00000652656.1:ENST00000652072.1:ENST00000651445.1:ENST00000423737.5:ENST00000650660.1:ENST00000651056.1:ENST00000652611.1:ENST00000652399.1:ENST00000652123.1:ENST00000651311.1:ENST00000651458.1:ENST00000652505.1:ENST00000652702.2:ENST00000652334.1:ENST00000652030.2:ENST00000651403.1:ENST00000652228.1:ENST00000651124.1:ENST00000650972.1:ENST00000651985.1:ENST00000651637.1:ENST00000650924.1:ENST00000651003.1:ENST00000652168.1:ENST00000651948.2:ENST00000651293.1:ENST00000651939.1:ENST00000650787.1:ENST00000651517.1:ENST00000651662.1:ENST00000652690.1:ENST00000651638.1:ENST00000670853.1:ENST00000652750.1:ENST00000652080.1:ENST00000651294.1:ENST00000652164.1:ENST00000651538.1:ENST00000650775.1:ENST00000651983.1:ENST00000651033.1:ENST00000651584.1:ENST00000650884.1:ENST00000651270.1	lncRNA	lncRNA	lncRNA	lncRNA	3	85	2	2.17149	2.87479	3.57809	0.0308079	0.00109779	0.13151	0.0303708
chr2	15512349	15512449	1072672	0	-	0.43	(0.408,0.44]	chr2	114441	6	INTRON	INTRON	NBAS	ENSG00000151779.13	ENST00000281513.10	protein_coding	protein_coding	protein_coding	protein_coding	5	81	2	2.2616	2.874765	3.48793	0.00321416	0.00130904	0.0523065	0.0331539
chr16	74328171	74328270	6523130	0	-	0.343434	(0.32,0.35]	chr16	631552	149	INTRON	INTRON	ENSG00000259972	ENSG00000259972.3	ENST00000565313.1:ENST00000561921.1	lncRNA	lncRNA	lncRNA	lncRNA	3	72	2	2.72473	2.874715	3.0247	0.00671684	0.00433316	0.0738715	0.0579683
chr16	18165242	18165342	6454287	0	-	0.35	(0.32,0.35]	chr16	621964	138	INTRON	INTRON	ENSG00000260242	ENSG00000260242.1	ENST00000563866.1	lncRNA	lncRNA	lncRNA	lncRNA	5	96	2	2.02647	2.8746150000000004	3.72276	0.0116933	3.96144e-4	0.0892647	0.0178616
chr1	2231112	2231210	2193	0	+	0.683673	(0.57,1]	chr1	549	10	INTRON	INTRON	SKI	ENSG00000157933.10	ENST00000378536.5	protein_coding	protein_coding	protein_coding	protein_coding	5	50	2	2.49621	2.874355	3.2525	0.00209832	1.55446e-4	0.0413494	0.0106835
chr5	138013139	138013238	2730600	0	-	0.525253	(0.515,0.57]	chr5	256991	8	INTRON	INTRON	FAM13B	ENSG00000031003.11	ENST00000689681.1:ENST00000033079.7:ENST00000425075.6:ENST00000420893.6:ENST00000514310.5	protein_coding	protein_coding	protein_coding	protein_coding	2	39	2	2.65834	2.87418	3.09002	0.0187418	0.00491099	0.117523	0.0609494
chr11	78117686	78117785	4998114	0	-	0.525253	(0.515,0.57]	chr11	472349	25	INTRON	INTRON	ALG8	ENSG00000159063.14	ENST00000679559.1:ENST00000680398.1:ENST00000681221.1:ENST00000527099.2:ENST00000681489.1:ENST00000525783.6:ENST00000529139.6:ENST00000680761.1:ENST00000525870.6:ENST00000680866.1:ENST00000680223.1:ENST00000526737.6:ENST00000681575.1:ENST00000299626.10:ENST00000680467.1:ENST00000679497.1:ENST00000681351.1:ENST00000679697.1:ENST00000680580.1:ENST00000526849.6:ENST00000680256.1:ENST00000680797.1:ENST00000681723.1:ENST00000680142.1:ENST00000679685.1:ENST00000681384.1:ENST00000679874.1:ENST00000679444.1:ENST00000680459.1:ENST00000681699.1:ENST00000679986.1:ENST00000680063.1:ENST00000530608.6:ENST00000681765.1:ENST00000681225.1:ENST00000681417.1:ENST00000530910.6:ENST00000680329.1:ENST00000679581.1:ENST00000524925.2:ENST00000681853.1:ENST00000376156.7:ENST00000679648.1:ENST00000680101.1:ENST00000680829.1:ENST00000680499.1:ENST00000525761.3:ENST00000532440.6:ENST00000680996.1:ENST00000532306.6:ENST00000680399.1:ENST00000679539.1:ENST00000615266.5:ENST00000681957.1:ENST00000532552.2:ENST00000680643.1:ENST00000530454.6:ENST00000525755.6:ENST00000532050.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	26	2	1.7074	2.87413	4.04086	0.0779432	0.0197045	0.196685	0.120063
chr13	110698961	110699059	5650047	0	-	0.540816	(0.515,0.57]	chr13	538292	6	INTRON	INTRON	CARS2	ENSG00000134905.17	ENST00000257347.9:ENST00000535398.5:ENST00000465145.5:ENST00000539269.5:ENST00000544488.5:ENST00000541443.5:ENST00000542126.5:ENST00000542709.5:ENST00000537394.5:ENST00000540629.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	26	2	1.7074	2.87413	4.04086	0.0779432	0.0197045	0.196685	0.120063
chr9	5641022	5641122	4097422	0	+	0.32	(0.28,0.32]	chr9	373372	112	INTRON	INTRON	RIC1	ENSG00000107036.12	ENST00000251879.10:ENST00000414202.7:ENST00000418622.7	protein_coding	protein_coding	protein_coding	protein_coding	3	75	2	2.09794	2.87405	3.65016	0.0340483	6.39301e-4	0.134863	0.0228666
chr4	55633319	55633417	2150670	0	-	0.295918	(0.28,0.32]	chr4	211642	25	INTRON	INTRON	NMU	ENSG00000109255.11	ENST00000511469.5:ENST00000264218.7:ENST00000505262.5:ENST00000507338.1:ENST00000515325.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	104	2	2.47916	2.87383	3.2685	0.00432734	0.0015115	0.0579331	0.0360297
chr6	15332922	15333022	2823816	0	+	0.46	(0.44,0.476]	chr6	265192	180	INTRON	INTRON	JARID2	ENSG00000008083.14	ENST00000341776.7:ENST00000397311.4	protein_coding	protein_coding	protein_coding	protein_coding	4	71	2	2.07016	2.873775	3.67739	0.0151815	3.8961e-4	0.0994339	0.0177751
chr4	79317313	79317409	2168721	0	-	0.416667	(0.408,0.44]	chr4	213819	8	UTR3	UTR3:EXON_MRNA:INTRON	NAA11	ENSG00000156269.5	ENST00000511542.1:ENST00000513733.1:ENST00000286794.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	95	2	2.82697	2.87365	2.92033	0.00162151	4.95662e-4	0.0367655	0.0201536
chr19	21175052	21175152	7040292	0	+	0.47	(0.44,0.476]	chr19	701951	2	SS3_PROX	SS3_PROX:INTRON	ZNF431	ENSG00000196705.8	ENST00000600692.5:ENST00000599296.5:ENST00000594425.5:ENST00000311048.11:ENST00000598331.1	protein_coding	protein_coding	protein_coding	protein_coding	2	30	2	1.77101	2.873635	3.97626	0.0693975	0.0300538	0.184298	0.142135
chr2	178572244	178572343	931445	0	+	0.444444	(0.44,0.476]	chr2	102333	4	INTRON	INTRON	TTN-AS1	ENSG00000237298.10	ENST00000419746.5:ENST00000630096.2:ENST00000659121.1:ENST00000456053.5:ENST00000590773.6:ENST00000592600.6:ENST00000592630.5:ENST00000592750.5:ENST00000591332.5:ENST00000586707.6:ENST00000653807.1:ENST00000585451.5:ENST00000657023.1:ENST00000626117.2:ENST00000590807.5:ENST00000626954.2:ENST00000586452.5:ENST00000592689.5:ENST00000586831.5:ENST00000625480.2:ENST00000628826.2:ENST00000628296.2:ENST00000626138.2:ENST00000625536.2:ENST00000627564.2:ENST00000438095.1:ENST00000590932.5	lncRNA	lncRNA	lncRNA	lncRNA	2	30	2	1.77101	2.873635	3.97626	0.0693975	0.0300538	0.184298	0.142135
chr8	126225823	126225923	4050890	0	-	0.47	(0.44,0.476]	chr8	369353	1124	INTRON	INTRON	LINC00861	ENSG00000245164.9	ENST00000651482.1	lncRNA	lncRNA	lncRNA	lncRNA	2	30	2	1.77101	2.873635	3.97626	0.0693975	0.0300538	0.184298	0.142135
chr19	47609307	47609407	7085764	0	+	0.61	(0.57,1]	chr19	709045	13	INTRON	INTRON	ENSG00000268746	ENSG00000268746.1	ENST00000599924.1	lncRNA	lncRNA	lncRNA	lncRNA	5	50	2	2.81549	2.873495	2.9315	9.1984e-4	3.90081e-4	0.0278396	0.0177751
chr2	85544809	85544903	821625	0	+	0.425532	(0.408,0.44]	chr2	91572	12	UTR3	UTR3:EXON_MRNA	MAT2A	ENSG00000168906.13	ENST00000306434.8	protein_coding	protein_coding	protein_coding	protein_coding	39	695	2	2.76059	2.873385	2.98618	5.05223e-6	2.54577e-7	0.00166411	2.46133e-4
chr22	20546561	20546660	7479743	0	+	0.494949	(0.476,0.515]	chr22	762972	90	INTRON	INTRON	MED15	ENSG00000099917.17	ENST00000445987.5:ENST00000444094.5:ENST00000414658.5:ENST00000486656.5:ENST00000433831.5:ENST00000432052.5:ENST00000292733.11:ENST00000263205.11:ENST00000477824.5:ENST00000406969.5:ENST00000382974.6:ENST00000441501.5:ENST00000445189.5:ENST00000451058.5:ENST00000473028.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	80	2	2.21313	2.8733750000000002	3.53362	0.00401502	0.00102391	0.0578059	0.029231300000000002
chr2	241684215	241684315	1349413	0	-	0.32	(0.28,0.32]	chr2	141812	1	SS5_PROX	SS5_PROX:INTRON	DTYMK	ENSG00000168393.13	ENST00000400770.6:ENST00000305784.7:ENST00000445261.5:ENST00000432348.5:ENST00000420144.1:ENST00000493095.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	55	2	2.57195	2.87324	3.17453	0.0331711	0.00429297	0.133994	0.0599065
chr5	132361594	132361692	2722383	0	-	0.306122	(0.28,0.32]	chr5	255898	11	INTRON	INTRON	MIR3936HG	ENSG00000233006.8	ENST00000621103.4:ENST00000669845.1:ENST00000649993.1	lncRNA	lncRNA	lncRNA	lncRNA	2	55	2	2.57195	2.87324	3.17453	0.0331711	0.00429297	0.133994	0.0599065
chr10	46786748	46786824	4430716	0	+	0.552632	(0.515,0.57]	chr10	408499	2	EXON_LNCRNA	EXON_LNCRNA	BMS1P1	ENSG00000204177.11	ENST00000580094.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	2	38	2	2.83501	2.873205	2.9114	0.0117686	0.00826019	0.0894475	0.0813266
chr21	46267418	46267510	7471239	0	-	0.554348	(0.515,0.57]	chr21	761660	4	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	MCM3AP	ENSG00000160294.11	ENST00000397708.1:ENST00000291688.6:ENST00000486937.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	38	2	2.83501	2.873205	2.9114	0.0117686	0.00826019	0.0894475	0.0813266
chr1	99708404	99708502	514737	0	-	0.489796	(0.476,0.515]	chr1	60320	46	UTR3	UTR3:EXON_MRNA	FRRS1	ENSG00000156869.14	ENST00000646001.2	protein_coding	protein_coding	protein_coding	protein_coding	3	59	2	2.16377	2.8731	3.58243	0.0243026	6.18479e-4	0.12011	0.0223951
chr2	208286632	208286732	992209	0	+	0.49	(0.476,0.515]	chr2	106624	3	INTRON	INTRON	PIKFYVE	ENSG00000115020.17	ENST00000264380.9:ENST00000443896.5:ENST00000392202.7:ENST00000407449.5:ENST00000308862.10:ENST00000452564.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	59	2	2.16377	2.8731	3.58243	0.0243026	6.18479e-4	0.12011	0.0223951
chr5	141606917	141607017	2740068	0	-	0.3	(0.28,0.32]	chr5	258168	183	INTRON	INTRON	DIAPH1	ENSG00000131504.18	ENST00000647433.1:ENST00000389054.8:ENST00000518047.5:ENST00000523100.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	138	2	2.70888	2.873095	3.03731	0.0014867	4.99158e-4	0.035	0.020217099999999998
chr7	128747730	128747819	3408460	0	+	0.393258	(0.378,0.408]	chr7	318425	3	UTR5	UTR5:EXON_MRNA:INTRON	CALU	ENSG00000128595.17	ENST00000535011.6:ENST00000542996.6:ENST00000249364.9:ENST00000449187.6:ENST00000479257.5	protein_coding	protein_coding	protein_coding	protein_coding	13	239	2	2.76687	2.872915	2.97896	6.56464e-5	2.29188e-5	0.00715734	0.00373284
chr7	72951173	72951269	3553767	0	-	0.447917	(0.44,0.476]	chr7	330613	6	INTRON	INTRON	NSUN5P2	ENSG00000106133.18	ENST00000602348.5:ENST00000444583.6:ENST00000388955.8:ENST00000485741.6:ENST00000457352.4	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	7	132	2	2.55734	2.872855	3.18837	7.72402e-4	1.07866e-4	0.0255867	0.00931098
chr3	186990987	186991086	1586784	0	+	0.444444	(0.44,0.476]	chr3	164340	39	INTRON	INTRON	ST6GAL1	ENSG00000073849.16	ENST00000676786.1:ENST00000169298.8:ENST00000457772.6:ENST00000455441.5:ENST00000427315.5:ENST00000677292.1:ENST00000458216.5:ENST00000430309.5:ENST00000417392.5:ENST00000438590.5:ENST00000448408.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	71	2	1.98938	2.87273	3.75608	0.0198602	2.6487e-4	0.109608	0.0144071
chr8	23225467	23225550	3714552	0	+	0.445783	(0.44,0.476]	chr8	345063	4	EXON_LNCRNA	EXON_LNCRNA:SS3_PROX:INTRON	TNFRSF10A-DT	ENSG00000246582.3	ENST00000517774.1:ENST00000500853.1:ENST00000670072.1	lncRNA	lncRNA	lncRNA	lncRNA	10	170	2	2.23854	2.87271	3.50688	0.00116321	8.96833e-6	0.0312127	0.00215882
chr10	67887116	67887216	4440424	0	+	0.44	(0.408,0.44]	chr10	409423	3	SS3_PROX	SS3_PROX:INTRON	SIRT1	ENSG00000096717.12	ENST00000212015.11:ENST00000432464.5:ENST00000497639.5:ENST00000473922.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	59	2	2.73941	2.87268	3.00595	0.00781452	0.002744	0.0759016	0.0484022
chr4	150553022	150553122	2267095	0	-	0.42	(0.408,0.44]	chr4	220681	616	INTRON	INTRON	LRBA	ENSG00000198589.14	ENST00000357115.9:ENST00000651943.2:ENST00000510413.5:ENST00000503716.5:ENST00000509835.5:ENST00000648626.1:ENST00000651695.1:ENST00000651035.1:ENST00000507224.5:ENST00000513021.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	59	2	2.73941	2.87268	3.00595	0.00781452	0.002744	0.0759016	0.0484022
chr14	103439706	103439803	5826177	0	+	0.28866000000000003	(0.28,0.32]	chr14	552832	10	INTRON	INTRON	MARK3	ENSG00000075413.19	ENST00000678179.1:ENST00000676838.1:ENST00000677348.1:ENST00000677404.1:ENST00000676694.1:ENST00000676938.1:ENST00000678619.1:ENST00000676897.1:ENST00000677214.1:ENST00000677942.1:ENST00000676830.1:ENST00000678999.1:ENST00000677228.1:ENST00000556744.2:ENST00000677104.1:ENST00000679330.1:ENST00000560417.6:ENST00000440884.7:ENST00000676475.1:ENST00000677035.1:ENST00000678022.1:ENST00000677560.1:ENST00000561314.6:ENST00000429436.7:ENST00000677118.1:ENST00000676564.1:ENST00000678169.1:ENST00000678175.1:ENST00000678897.1:ENST00000678278.1:ENST00000676645.1:ENST00000677829.1:ENST00000678302.1:ENST00000677133.1:ENST00000561164.2:ENST00000558223.6:ENST00000559328.6:ENST00000678207.1:ENST00000677360.1:ENST00000676905.1:ENST00000678343.1:ENST00000677347.1:ENST00000678071.1:ENST00000677432.1:ENST00000678237.1:ENST00000677604.1:ENST00000676518.1:ENST00000677051.1:ENST00000677857.1:ENST00000677869.1:ENST00000678423.1:ENST00000560603.6:ENST00000416682.6:ENST00000303622.13:ENST00000216288.11:ENST00000679105.1:ENST00000553942.5:ENST00000335102.9:ENST00000561225.1:ENST00000678091.1:ENST00000561071.5:ENST00000558698.5:ENST00000559268.5:ENST00000560731.5:ENST00000676745.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	90	2	1.93544	2.87263	3.80982	0.0276828	3.09593e-4	0.123904	0.0157609
chr2	55012433	55012532	1121025	0	-	0.323232	(0.32,0.35]	chr2	120147	21	INTRON	INTRON	RTN4	ENSG00000115310.19	ENST00000404909.5:ENST00000394611.6:ENST00000317610.11:ENST00000357732.8:ENST00000337526.11:ENST00000357376.7:ENST00000405240.5:ENST00000438462.1	protein_coding	protein_coding	protein_coding	protein_coding	5	100	2	2.70922	2.872595	3.03597	0.00832487	4.28954e-4	0.0774402	0.0185474
chr4	39925036	39925136	2131673	0	-	0.48	(0.476,0.515]	chr4	210224	19	INTRON	INTRON	PDS5A	ENSG00000121892.15	ENST00000303538.13:ENST00000503396.5:ENST00000513798.1	protein_coding	protein_coding	protein_coding	protein_coding	4	71	2	2.59304	2.87253	3.15202	0.00455841	0.00158794	0.0595107	0.0367961
chr21	15737827	15737927	7370173	0	+	0.29	(0.28,0.32]	chr21	752186	70	INTRON	INTRON	USP25	ENSG00000155313.16	ENST00000400183.7:ENST00000285681.6:ENST00000285679.10:ENST00000351097.9	protein_coding	protein_coding	protein_coding	protein_coding	4	89	2	2.25298	2.87248	3.49198	0.00791652	0.00195595	0.0797304	0.0400756
chr2	126662653	126662752	862074	0	+	0.454545	(0.44,0.476]	chr2	96613	40	INTRON	INTRON	GYPC	ENSG00000136732.16	ENST00000459787.1:ENST00000259254.9:ENST00000409836.3:ENST00000356887.12	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	60	2	2.27304	2.87242	3.4718	0.0158915	0.00136358	0.109464	0.0336321
chr5	57248670	57248765	2358814	0	+	0.473684	(0.44,0.476]	chr5	227609	11	INTRON	INTRON	GPBP1	ENSG00000062194.16	ENST00000424459.7:ENST00000514387.6:ENST00000506184.7:ENST00000511209.5:ENST00000264779.6:ENST00000513524.5:ENST00000309096.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	60	2	2.27304	2.87242	3.4718	0.0158915	0.00136358	0.109464	0.0336321
chr3	143004351	143004450	1529100	0	+	0.424242	(0.408,0.44]	chr3	159324	16	INTRON	INTRON	U2SURP	ENSG00000163714.18	ENST00000600150.5:ENST00000488497.7:ENST00000493782.5:ENST00000473835.7:ENST00000461591.5:ENST00000493598.6:ENST00000463563.6:ENST00000470400.5:ENST00000465175.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	159	2	2.13138	2.87233	3.61328	0.00281125	4.37974e-6	0.0471596	0.00140662
chr2	39262549	39262647	1102512	0	-	0.295918	(0.28,0.32]	chr2	118343	14	INTRON	INTRON	MAP4K3	ENSG00000011566.15	ENST00000263881.8:ENST00000437545.5:ENST00000341681.9:ENST00000475457.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	56	2	2.39347	2.872275	3.35108	0.0504457	0.00221345	0.156383	0.0435144
chr6	17932930	17933030	3068005	0	-	0.3	(0.28,0.32]	chr6	285100	344	INTRON	INTRON	KIF13A	ENSG00000137177.20	ENST00000378814.9:ENST00000259711.11:ENST00000378826.6:ENST00000378843.6:ENST00000636847.1:ENST00000507576.1:ENST00000505588.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	56	2	2.39347	2.872275	3.35108	0.0504457	0.00221345	0.156383	0.0435144
chrX	154745264	154745364	7915262	0	-	0.43	(0.408,0.44]	chrX	806107	286	INTRON	INTRON	GAB3	ENSG00000160219.12	ENST00000496390.5:ENST00000424127.3:ENST00000369575.7:ENST00000369568.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	181	2	1.56655	2.87223	4.17791	0.00914096	2.00329e-6	0.0855292	9.69149e-4
chr4	109815634	109815697	2020977	0	+	0.412698	(0.408,0.44]	chr4	200947	1	EXON_MRNA	EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GAR1	ENSG00000109534.17	ENST00000394631.7:ENST00000506840.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	44	2	2.71911	2.87212	3.02513	0.0189489	0.0059965	0.108861	0.0700606
chr8	31172295	31172394	3729356	0	+	0.424242	(0.408,0.44]	chr8	346714	47	INTRON	INTRON	WRN	ENSG00000165392.11	ENST00000650667.1:ENST00000298139.7:ENST00000521620.5:ENST00000651946.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	44	2	2.71911	2.87212	3.02513	0.0189489	0.0059965	0.108861	0.0700606
chr9	91852674	91852774	4284289	0	-	0.41	(0.408,0.44]	chr9	393909	765	INTRON	INTRON	ROR2	ENSG00000169071.15	ENST00000375715.5:ENST00000375708.4:ENST00000550066.5:ENST00000495386.5:ENST00000546883.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	44	2	2.71911	2.87212	3.02513	0.0189489	0.0059965	0.108861	0.0700606
chr9	83664543	83664639	4272639	0	-	0.34375	(0.32,0.35]	chr9	392940	1	SS5_PROX	SS5_PROX:INTRON	UBQLN1	ENSG00000135018.14	ENST00000376395.9:ENST00000533705.5:ENST00000257468.11:ENST00000526134.1:ENST00000527373.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	51	2	2.51061	2.8719599999999996	3.23331	0.0364463	0.00315414	0.138959	0.0515261
chr17	43239066	43239166	6776578	0	-	0.49	(0.476,0.515]	chr17	667944	52	INTRON	INTRON	CCDC200	ENSG00000236383.9	ENST00000594691.6:ENST00000615433.2	protein_coding	protein_coding	protein_coding	protein_coding	5	98	2	2.85177	2.871925	2.89208	0.00169916	4.83014e-4	0.0381936	0.0203603
chr2	180992643	180992743	936092	0	+	0.48	(0.476,0.515]	chr2	102627	27	INTRON	INTRON	UBE2E3	ENSG00000170035.16	ENST00000602303.5:ENST00000602959.5:ENST00000602479.5:ENST00000392415.6:ENST00000602291.5:ENST00000410062.9:ENST00000602499.5:ENST00000602710.5:ENST00000602762.5:ENST00000602888.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	108	2	2.14989	2.87189	3.59389	0.00611105	3.55544e-5	0.0676501	0.00476902
chr3	47826432	47826532	1420208	0	+	0.43	(0.408,0.44]	chr3	149220	3	SS5_PROX	SS5_PROX:INTRON	DHX30	ENSG00000132153.15	ENST00000395745.6:ENST00000445061.6:ENST00000441384.5:ENST00000348968.8:ENST00000446256.6:ENST00000619982.4:ENST00000457607.1:ENST00000471082.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	73	2	2.33039	2.87181	3.41323	0.00598147	0.00129989	0.0674604	0.0333764
chr1	65284592	65284692	135839	0	+	0.45	(0.44,0.476]	chr1	15346	193	INTRON	INTRON	DNAJC6	ENSG00000116675.16	ENST00000463018.5:ENST00000494710.6:ENST00000263441.11:ENST00000395325.7:ENST00000483402.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	74	2	1.87325	2.87174	3.87023	0.0265709	2.32199e-4	0.134088	0.0139633
chrX	45086972	45087071	7650774	0	+	0.414141	(0.408,0.44]	chrX	782848	6	INTRON	INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1:ENST00000675525.1:ENST00000414389.5:ENST00000675546.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	100	2	1.70815	2.87174	4.03533	0.0159677	6.08082e-5	0.101453	0.00644153
chr1	19912845	19912945	41052	0	+	0.3	(0.28,0.32]	chr1	4832	52	UTR3	UTR3:EXON_MRNA	OTUD3	ENSG00000169914.6	ENST00000375120.4	protein_coding	protein_coding	protein_coding	protein_coding	2	56	2	2.73945	2.8717	3.00395	0.017681	0.0101329	0.11319	0.0850389
chr16	89413849	89413948	6542828	0	-	0.626263	(0.57,1]	chr16	634260	9	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000647238.1:ENST00000644045.1:ENST00000643147.1:ENST00000644139.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	38	2	2.32017	2.8717	3.42323	0.00488159	8.58388e-4	0.0640618	0.0267428
chr6	3005332	3005423	2787905	0	+	0.571429	(0.57,1]	chr6	263236	3	INTRON	INTRON	NQO2	ENSG00000124588.22	ENST00000426637.5:ENST00000380472.7:ENST00000380455.11:ENST00000397717.7:ENST00000338130.7:ENST00000380441.5:ENST00000380454.8:ENST00000380430.6:ENST00000606474.1	protein_coding	protein_coding	protein_coding	protein_coding	4	38	2	2.32017	2.8717	3.42323	0.00488159	8.58388e-4	0.0640618	0.0267428
chr7	111297490	111297590	3621457	0	-	0.29	(0.28,0.32]	chr7	337093	3336	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	56	2	2.73945	2.8717	3.00395	0.017681	0.0101329	0.11319	0.0850389
chr3	45679653	45679753	1416966	0	+	0.42	(0.408,0.44]	chr3	148646	27	UTR3	UTR3:EXON_MRNA	LIMD1	ENSG00000144791.10	ENST00000273317.5	protein_coding	protein_coding	protein_coding	protein_coding	7	122	2	2.26135	2.871695	3.48204	0.00236769	6.71132e-5	0.0437837	0.00678102
chr14	102628812	102628912	5822895	0	+	0.48	(0.476,0.515]	chr14	552490	351	INTRON	INTRON	RCOR1	ENSG00000089902.10	ENST00000262241.7	protein_coding	protein_coding	protein_coding	protein_coding	8	143	2	2.6607	2.87169	3.08268	2.14753e-4	1.82084e-4	0.0128622	0.0122264
chr15	85019524	85019623	6089307	0	+	0.383838	(0.378,0.408]	chr15	579504	368	INTRON	INTRON	PDE8A	ENSG00000073417.15	ENST00000310298.8:ENST00000557957.5:ENST00000394553.6:ENST00000339708.9:ENST00000478717.5:ENST00000485596.5:ENST00000559742.5:ENST00000559086.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	62	2	2.51733	2.87166	3.22599	0.00808319	0.00288652	0.0766625	0.0494641
chr11	86039698	86039797	5014549	0	-	0.444444	(0.44,0.476]	chr11	473022	77	INTRON	INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000630913.2:ENST00000528398.5:ENST00000356360.9:ENST00000534412.5:ENST00000531558.1:ENST00000531930.5:ENST00000532041.5:ENST00000525162.5:ENST00000528256.1:ENST00000528411.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	113	2	2.7096	2.871645	3.03369	0.00376205	5.18787e-5	0.0539118	0.00587266
chrX	111690570	111690670	7702112	0	+	0.36	(0.35,0.378]	chrX	788221	5	INTRON	INTRON	ALG13	ENSG00000101901.12	ENST00000487141.5:ENST00000394780.8:ENST00000251943.8:ENST00000610588.4:ENST00000621367.4:ENST00000622997.3:ENST00000624161.3:ENST00000636363.1:ENST00000624881.3:ENST00000495283.5:ENST00000486353.5:ENST00000623144.3:ENST00000470971.5:ENST00000623148.3:ENST00000471924.5:ENST00000436609.5:ENST00000470704.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	124	2	2.71175	2.871565	3.03138	0.00138349	1.86201e-4	0.0338784	0.0119078
chr19	229987	230075	7108998	0	-	0.386364	(0.378,0.408]	chr19	713716	5	EXON_MRNA	EXON_MRNA:INTRON	LINC01002	ENSG00000282508.2	ENST00000632624.2:ENST00000633179.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	15	269	2	2.39061	2.871515	3.35242	2.62774e-4	2.5486e-6	0.0149561	0.00101667
chr19	19905740	19905839	7037044	0	+	0.464646	(0.44,0.476]	chr19	701613	43	INTRON	INTRON	ZNF93	ENSG00000184635.16	ENST00000592613.1:ENST00000591366.5:ENST00000343769.6:ENST00000588146.1:ENST00000586021.5:ENST00000592245.1:ENST00000592160.5:ENST00000589903.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	45	2	2.66433	2.8714750000000002	3.07862	0.0194358	0.0060153	0.119831	0.0674604
chr5	145733176	145733276	2745613	0	-	0.47	(0.44,0.476]	chr5	258674	285	INTRON	INTRON	PRELID2	ENSG00000186314.12	ENST00000510259.5:ENST00000510594.1:ENST00000515161.1	protein_coding	processed_transcript	protein_coding	processed_transcript	2	45	2	2.66433	2.8714750000000002	3.07862	0.0194358	0.0060153	0.119831	0.0674604
chr5	177442803	177442901	2556040	0	+	0.438776	(0.408,0.44]	chr5	244248	11	UTR3	UTR3:EXON_MRNA	GRK6	ENSG00000198055.11	ENST00000355472.10:ENST00000393576.7	protein_coding	protein_coding	protein_coding	protein_coding	3	62	2	2.14732	2.8714399999999998	3.59556	0.0237354	8.33275e-4	0.129075	0.0266389
chr9	92258559	92258657	4286973	0	-	0.438776	(0.408,0.44]	chr9	394157	19	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	IARS1	ENSG00000196305.19	ENST00000375643.7:ENST00000443024.7:ENST00000447699.7:ENST00000683537.1:ENST00000684726.1:ENST00000683192.1:ENST00000683565.1:ENST00000682756.1:ENST00000684542.1:ENST00000683793.1:ENST00000683817.1:ENST00000682141.1:ENST00000682893.1:ENST00000684557.1:ENST00000498025.2:ENST00000682156.1:ENST00000627121.3:ENST00000683469.1:ENST00000683495.1:ENST00000682578.1:ENST00000682533.1:ENST00000472894.2:ENST00000684757.1:ENST00000684445.1:ENST00000683376.1:ENST00000683679.1:ENST00000683119.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	22	386	2	2.82775	2.871425	2.9151	3.178e-5	1.10888e-6	0.00471647	6.05355e-4
chr1	54322571	54322671	462919	0	-	0.4	(0.378,0.408]	chr1	55768	407	INTRON	INTRON	SSBP3	ENSG00000157216.16	ENST00000610401.5:ENST00000357475.9:ENST00000371319.8:ENST00000417664.7:ENST00000533946.6:ENST00000326956.12:ENST00000371320.8:ENST00000426150.5:ENST00000533209.5:ENST00000525990.1:ENST00000528787.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	46	2	2.46373	2.8714	3.27907	0.0382831	0.0023379	0.141795	0.0442989
chr2	231459225	231459325	1341766	0	-	0.4	(0.378,0.408]	chr2	140514	1	SS3_PROX	SS3_PROX:INTRON	NCL	ENSG00000115053.17	ENST00000322723.9:ENST00000676514.1:ENST00000677703.1:ENST00000678828.1:ENST00000676798.1:ENST00000678246.1:ENST00000679348.1:ENST00000417652.6:ENST00000453992.6:ENST00000678729.1:ENST00000678849.1:ENST00000678405.1:ENST00000676913.1:ENST00000678131.1:ENST00000678364.1:ENST00000676690.1:ENST00000461347.5:ENST00000356936.6:ENST00000454824.6:ENST00000436894.2:ENST00000677786.1:ENST00000494618.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	38	2	1.53052	2.87139	4.21226	0.0744544	0.0177403	0.192012	0.11319
chr16	16658538	16658638	6312452	0	+	0.41	(0.408,0.44]	chr16	604117	2	SS5_PROX	SS5_PROX:INTRON	ENSG00000260126	ENSG00000260126.2	ENST00000567465.2	lncRNA	lncRNA	lncRNA	lncRNA	5	100	2	2.30838	2.871345	3.43431	0.00547703	1.44222e-4	0.0671198	0.0109794
chr3	152326919	152327019	1535568	0	+	0.44	(0.408,0.44]	chr3	159996	246	INTRON	INTRON	MBNL1	ENSG00000152601.18	ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000495875.6:ENST00000324210.10:ENST00000493459.5:ENST00000459747.1:ENST00000460591.5:ENST00000545754.5:ENST00000357472.7:ENST00000324196.9:ENST00000498502.5:ENST00000463374.5:ENST00000485910.5:ENST00000465907.6:ENST00000492948.5:ENST00000485509.5:ENST00000464596.5	protein_coding	protein_coding	protein_coding	protein_coding	6	90	2	2.14702	2.87129	3.59556	0.0030836	8.33275e-4	0.0510391	0.0266389
chr12	121334285	121334383	5436998	0	-	0.397959	(0.378,0.408]	chr12	519894	30	EXON_MRNA	EXON_MRNA:INTRON	ANAPC5	ENSG00000089053.13	ENST00000261819.8:ENST00000535641.5:ENST00000541887.5:ENST00000534976.5:ENST00000441917.6:ENST00000539079.5:ENST00000544314.5:ENST00000545218.5:ENST00000535472.5:ENST00000538334.1:ENST00000538223.1:ENST00000539612.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	118	2	2.6411	2.87126	3.10142	0.00174684	1.15321e-4	0.0375932	0.0092036
chr3	31533686	31533786	1391404	0	+	0.6	(0.57,1]	chr3	145684	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	STT3B	ENSG00000163527.10	ENST00000453168.5:ENST00000295770.4:ENST00000423527.5:ENST00000462235.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	42	2	2.66305	2.8712150000000003	3.07938	0.00327879	4.22401e-4	0.0509077	0.0183838
chr2	61393260	61393359	1129772	0	-	0.444444	(0.44,0.476]	chr2	121474	96	INTRON	INTRON	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000453133.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	95	2	2.28847	2.8711399999999996	3.45381	0.00692113	7.90762e-5	0.0718189	0.00739361
chr3	72446295	72446395	1745918	0	-	0.39	(0.378,0.408]	chr3	177369	4	SS5_PROX	SS5_PROX:INTRON	RYBP	ENSG00000163602.12	ENST00000477973.5	protein_coding	protein_coding	protein_coding	protein_coding	4	74	2	2.13797	2.87113	3.60429	0.0124882	5.71664e-4	0.0923444	0.0217398
chr6	15267551	15267651	2823161	0	+	0.41	(0.408,0.44]	chr6	265190	182	INTRON	INTRON	JARID2	ENSG00000008083.14	ENST00000341776.7:ENST00000397311.4	protein_coding	protein_coding	protein_coding	protein_coding	4	73	2	1.9831	2.87096	3.75882	0.018491	4.04678e-4	0.116694	0.0185763
chr20	62912712	62912811	7362316	0	-	0.535354	(0.515,0.57]	chr20	751204	7	INTRON	INTRON	DIDO1	ENSG00000101191.17	ENST00000266070.8:ENST00000395343.6:ENST00000395340.5:ENST00000370371.8:ENST00000370368.5:ENST00000354665.8:ENST00000370366.1	protein_coding	protein_coding	protein_coding	protein_coding	5	81	2	2.40178	2.87093	3.34008	0.00382306	1.23135e-4	0.0542786	0.00949625
chr1	45639509	45639609	440105	0	-	0.4	(0.378,0.408]	chr1	53319	39	INTRON	INTRON	GPBP1L1	ENSG00000159592.11	ENST00000290795.7:ENST00000355105.8	protein_coding	protein_coding	protein_coding	protein_coding	2	46	2	2.78705	2.87082	2.95459	0.0135539	0.00957623	0.101363	0.0820838
chr22	19352673	19352764	7553611	0	-	0.406593	(0.378,0.408]	chr22	772190	9	INTRON	INTRON	HIRA:C22orf39	ENSG00000100084.14:ENSG00000242259.9	ENST00000263208.5:ENST00000340170.8:ENST00000509549.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	46	2	2.78705	2.87082	2.95459	0.0135539	0.00957623	0.101363	0.0820838
chr1	35978164	35978263	71621	0	+	0.424242	(0.408,0.44]	chr1	9158	43	INTRON	INTRON	AGO3	ENSG00000126070.20	ENST00000324350.9:ENST00000397828.3:ENST00000634486.1:ENST00000373191.9:ENST00000246314.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	44	2	2.6542	2.87079	3.08738	0.0227514	0.00478231	0.117618	0.0636201
chr10	130175983	130176081	4536734	0	+	0.438776	(0.408,0.44]	chr10	418830	5	INTRON	INTRON	GLRX3	ENSG00000108010.12	ENST00000331244.10:ENST00000481034.1:ENST00000368644.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	44	2	2.6542	2.87079	3.08738	0.0227514	0.00478231	0.117618	0.0636201
chrX	101047152	101047252	7855235	0	-	0.44	(0.408,0.44]	chrX	800835	31	INTRON	INTRON	TRMT2B:TRMT2B-AS1	ENSG00000188917.15:ENSG00000225839.2	ENST00000545398.5:ENST00000372936.4:ENST00000372939.5:ENST00000372935.5:ENST00000478422.1:ENST00000443801.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA:processed_transcript	2	44	2	2.6542	2.87079	3.08738	0.0227514	0.00478231	0.117618	0.0636201
chr10	70166922	70167021	4640858	0	-	0.494949	(0.476,0.515]	chr10	426913	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SAR1A	ENSG00000079332.15	ENST00000373242.6:ENST00000373241.9:ENST00000373239.2	protein_coding	protein_coding	protein_coding	protein_coding	11	192	2	2.61688	2.8707700000000003	3.12466	9.10492e-5	4.9835e-5	0.00797978	0.00611327
chr16	254513	254597	6271814	0	+	0.571429	(0.57,1]	chr16	598400	1	CDS	CDS:EXON_MRNA	FAM234A	ENSG00000167930.17	ENST00000301679.7:ENST00000666018.1:ENST00000653392.1:ENST00000659283.1:ENST00000654053.1:ENST00000419173.5:ENST00000399932.8:ENST00000426695.5:ENST00000438220.5:ENST00000447499.1:ENST00000453430.5:ENST00000449945.5:ENST00000420046.5:ENST00000301678.7:ENST00000420500.5:ENST00000417499.1:ENST00000600536.1:ENST00000496874.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	32	2	2.42282	2.870705	3.31859	0.00879576	0.00137292	0.0790073	0.0340241
chrX	44894786	44894886	7648818	0	+	0.6	(0.57,1]	chrX	782726	204	INTRON	INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000675440.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000621147.5:ENST00000475233.1:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	100	2	2.72161	2.87066	3.01971	3.02803e-5	1.96024e-5	0.00456454	0.00340863
chr12	31978889	31978988	5106799	0	+	0.383838	(0.378,0.408]	chr12	482333	82	INTRON	INTRON	RESF1	ENSG00000174718.12	ENST00000541981.5:ENST00000540924.5:ENST00000312561.9:ENST00000535596.5:ENST00000397578.7:ENST00000381054.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	98	2	2.73003	2.870645	3.01126	0.00115997	8.35208e-4	0.0311664	0.0263691
chr1	45844575	45844675	94223	0	+	0.43	(0.408,0.44]	chr1	12696	146	INTRON	INTRON	MAST2	ENSG00000086015.23	ENST00000470809.1:ENST00000361297.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	44	2	2.78122	2.8706449999999997	2.96007	0.015812	0.00753901	0.101453	0.0773151
chr10	125108011	125108110	4713811	0	-	0.424242	(0.408,0.44]	chr10	434907	69	INTRON	INTRON	CTBP2	ENSG00000175029.17	ENST00000337195.9:ENST00000411419.6:ENST00000494626.6:ENST00000531469.5:ENST00000460976.5:ENST00000476817.1:ENST00000530884.1:ENST00000530930.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	44	2	2.78122	2.8706449999999997	2.96007	0.015812	0.00753901	0.101453	0.0773151
chr18	80122037	80122136	6938218	0	+	0.464646	(0.44,0.476]	chr18	686196	40	INTRON	INTRON	ADNP2	ENSG00000101544.9	ENST00000262198.9:ENST00000560752.5:ENST00000559951.5:ENST00000560561.1:ENST00000561195.1	protein_coding	protein_coding	protein_coding	protein_coding	4	71	2	1.94723	2.87055	3.79387	0.0227424	2.19099e-4	0.117618	0.0129737
chr7	148820278	148820376	3670112	0	-	0.357143	(0.35,0.378]	chr7	340579	7	EXON_MRNA	EXON_MRNA:INTRON	EZH2	ENSG00000106462.12	ENST00000683292.1:ENST00000320356.7:ENST00000492143.5:ENST00000478654.5:ENST00000350995.6:ENST00000460911.5:ENST00000683744.1:ENST00000684510.1:ENST00000682317.1:ENST00000682263.1:ENST00000684300.1:ENST00000476773.5:ENST00000483967.5:ENST00000498186.5:ENST00000483012.1:ENST00000682401.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	155	2	2.41073	2.870355	3.32998	3.5493e-4	2.96509e-4	0.0168757	0.0160106
chr16	10437402	10437501	6286797	0	+	0.313131	(0.28,0.32]	chr16	601993	34	INTRON	INTRON	ATF7IP2	ENSG00000166669.14	ENST00000396559.5:ENST00000396560.6:ENST00000543967.5:ENST00000562102.6:ENST00000535850.5:ENST00000568027.5:ENST00000324570.9:ENST00000356427.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	74	2	2.4721	2.8703000000000003	3.2685	0.00906617	0.00432734	0.0854289	0.0579331
chr12	110305022	110305122	5226340	0	+	0.48	(0.476,0.515]	chr12	495250	79	INTRON	INTRON	ATP2A2	ENSG00000174437.18	ENST00000308664.10:ENST00000539276.7:ENST00000377685.9:ENST00000548169.2:ENST00000550248.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	80	2	2.41121	2.870265	3.32932	0.0110342	1.60666e-4	0.0873897	0.0109124
chr17	46166146	46166245	6784601	0	-	0.484848	(0.476,0.515]	chr17	669232	89	INTRON	INTRON	KANSL1	ENSG00000120071.15	ENST00000574590.6:ENST00000572904.6:ENST00000432791.7:ENST00000575318.6:ENST00000638275.1:ENST00000262419.10:ENST00000648792.1:ENST00000639531.1:ENST00000639150.1:ENST00000639853.1:ENST00000571698.2:ENST00000639375.1:ENST00000638269.1:ENST00000576248.2:ENST00000639356.1:ENST00000574655.6:ENST00000639099.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	71	2	2.24612	2.870115	3.49411	0.00799949	9.23453e-4	0.0766625	0.0278392
chr3	69045387	69045484	1734650	0	-	0.412371	(0.408,0.44]	chr3	176796	4	INTRON	INTRON	TMF1	ENSG00000144747.17	ENST00000398559.7:ENST00000646304.1:ENST00000646708.1:ENST00000488010.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	47	2	2.18807	2.8701100000000004	3.55215	0.0708044	7.01039e-4	0.184528	0.0241881
chr4	126440538	126440638	2235110	0	-	0.45	(0.44,0.476]	chr4	219005	52	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1:ENST00000651327.1	lncRNA	lncRNA	lncRNA	lncRNA	6	89	2	2.05546	2.870095	3.68473	0.00467486	5.47507e-4	0.0631417	0.0215463
chr18	9483931	9484031	6871218	0	+	0.58	(0.57,1]	chr18	680716	41	INTRON	INTRON	RALBP1	ENSG00000017797.13	ENST00000019317.8:ENST00000585015.6:ENST00000383432.8:ENST00000609094.2:ENST00000458039.3:ENST00000577221.1	protein_coding	protein_coding	protein_coding	protein_coding	6	57	2	2.69093	2.869995	3.04906	4.97245e-4	2.65452e-4	0.0206993	0.0144243
chr7	139416500	139416595	3438169	0	+	0.442105	(0.44,0.476]	chr7	320378	5	EXON_LNCRNA	EXON_LNCRNA:INTRON	LUC7L2:FMC1-LUC7L2	ENSG00000146963.18:ENSG00000269955.2	ENST00000541170.7:ENST00000541515.3:ENST00000619796.4:ENST00000354926.9:ENST00000456182.5:ENST00000263545.7:ENST00000498518.1:ENST00000482860.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	70	2	2.30673	2.86989	3.43305	0.0055175	0.00159668	0.0672816	0.0364566
chr11	65443642	65443742	4805979	0	+	0.51	(0.476,0.515]	chr11	446554	210	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	37	649	2	2.70905	2.8698550000000003	3.03066	1.10485e-5	1.27127e-7	0.00263136	1.6131e-4
chr7	102861732	102861831	3590236	0	-	0.525253	(0.515,0.57]	chr7	335159	65	INTRON	INTRON	FBXL13	ENSG00000161040.18	ENST00000694871.1:ENST00000694870.1:ENST00000448002.6:ENST00000379305.7:ENST00000440067.3:ENST00000456695.6:ENST00000313221.8:ENST00000436908.5:ENST00000455112.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	61	2	2.53705	2.869725	3.2024	0.00322022	0.00186194	0.0507087	0.039946
chr1	90025973	90026070	161007	0	+	0.56701	(0.515,0.57]	chr1	17360	33	INTRON	INTRON	ZNF326	ENSG00000162664.17	ENST00000340281.9:ENST00000394583.7:ENST00000370447.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	141	2	2.71737	2.8697	3.02203	3.51318e-4	1.66254e-5	0.0174637	0.00307962
chr18	26084051	26084138	6959674	0	-	0.298851	(0.28,0.32]	chr18	688500	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	SS18	ENSG00000141380.14	ENST00000415083.7:ENST00000542420.6:ENST00000579640.5:ENST00000269138.9:ENST00000269137.11:ENST00000585121.5:ENST00000539244.6:ENST00000585241.5:ENST00000578954.5:ENST00000579061.5:ENST00000577636.5:ENST00000584083.5:ENST00000578700.5:ENST00000582792.5:ENST00000581021.5:ENST00000577572.5:ENST00000582448.5:ENST00000581570.5:ENST00000577751.5:ENST00000580751.5:ENST00000580642.2:ENST00000578595.1:ENST00000583595.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	120	2	2.81789	2.869655	2.92142	0.00234443	7.16126e-4	0.0434875	0.0244108
chr2	61520775	61520875	1131046	0	-	0.32	(0.28,0.32]	chr2	121612	3	SS3_PROX	SS3_PROX:INTRON	XPO1	ENSG00000082898.19	ENST00000676553.1:ENST00000677556.1:ENST00000677814.1:ENST00000676771.1:ENST00000677803.1:ENST00000677239.1:ENST00000678790.1:ENST00000677928.1:ENST00000678182.1:ENST00000677150.1:ENST00000678172.1:ENST00000678360.1:ENST00000678081.1:ENST00000676889.1:ENST00000676783.1:ENST00000679035.1:ENST00000677422.1:ENST00000677417.1:ENST00000677813.1:ENST00000676999.1:ENST00000676667.1:ENST00000678263.1:ENST00000678877.1:ENST00000677933.1:ENST00000680228.1:ENST00000677289.1:ENST00000677190.1:ENST00000401558.7:ENST00000428210.5:ENST00000677290.1:ENST00000677850.1:ENST00000451765.6:ENST00000676789.1:ENST00000678741.1:ENST00000404992.6:ENST00000406957.5:ENST00000443240.5:ENST00000476585.5:ENST00000468259.1:ENST00000420673.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	120	2	2.81789	2.869655	2.92142	0.00234443	7.16126e-4	0.0434875	0.0244108
chr14	30918269	30918367	5856783	0	-	0.469388	(0.44,0.476]	chr14	556453	43	INTRON	INTRON	STRN3	ENSG00000196792.12	ENST00000355683.9:ENST00000357479.10:ENST00000555358.5:ENST00000366206.2:ENST00000556577.1:ENST00000554991.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	44	2	2.5364	2.86965	3.2029	0.0309324	0.00308681	0.13151	0.0510391
chr2	219231546	219231641	1019810	0	+	0.452632	(0.44,0.476]	chr2	108856	13	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	ANKZF1	ENSG00000163516.14	ENST00000453432.5:ENST00000409849.5:ENST00000323348.10:ENST00000461731.5:ENST00000467884.5:ENST00000474225.5:ENST00000475202.5:ENST00000477479.5:ENST00000496346.5:ENST00000463792.5:ENST00000435521.5:ENST00000486203.5:ENST00000416565.1:ENST00000410034.7:ENST00000447157.5:ENST00000436226.1:ENST00000491181.5:ENST00000465550.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	44	2	2.5364	2.86965	3.2029	0.0309324	0.00308681	0.13151	0.0510391
chr7	136174052	136174152	3431994	0	+	0.47	(0.44,0.476]	chr7	319911	565	INTRON	INTRON	ENSG00000232053	ENSG00000232053.7	ENST00000657456.1:ENST00000668062.1:ENST00000668668.1:ENST00000445293.6:ENST00000659747.1:ENST00000668896.1:ENST00000435996.1	lncRNA	lncRNA	lncRNA	lncRNA	2	44	2	2.5364	2.86965	3.2029	0.0309324	0.00308681	0.13151	0.0510391
chr6	154760900	154761000	3002092	0	+	0.44	(0.408,0.44]	chr6	280737	185	INTRON	INTRON	SCAF8	ENSG00000213079.10	ENST00000367186.7:ENST00000417268.3:ENST00000461219.5:ENST00000367178.8:ENST00000464628.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	131	2	2.72323	2.869575	3.01592	0.00114246	5.77417e-5	0.0307966	0.00620725
chr3	32539070	32539167	1649799	0	-	0.350515	(0.35,0.378]	chr3	169140	16	INTRON	INTRON	DYNC1LI1	ENSG00000144635.9	ENST00000273130.9:ENST00000481915.5:ENST00000432458.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	35	2	1.65083	2.869495	4.08816	0.0521072	0.046021	0.177022	0.149888
chr12	120200434	120200528	5433309	0	-	0.43617	(0.408,0.44]	chr12	519368	4	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPLP0	ENSG00000089157.16	ENST00000392514.9:ENST00000551150.5:ENST00000546989.5:ENST00000313104.9:ENST00000228306.8:ENST00000552461.5:ENST00000549098.5:ENST00000551258.5:ENST00000546990.5:ENST00000547211.5:ENST00000547475.5:ENST00000547173.5:ENST00000550856.5:ENST00000548568.5:ENST00000546564.5:ENST00000547191.5:ENST00000550296.5:ENST00000552902.5:ENST00000548495.5:ENST00000550423.5:ENST00000551914.1:ENST00000548551.5:ENST00000549242.1:ENST00000551783.1:ENST00000551336.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	20	313	2	2.36308	2.8694800000000003	3.37588	9.1443700000000007e-05	2.08728e-5	0.00850096	0.00353198
chr3	21545394	21545494	1387362	0	+	0.27	[0,0.28]	chr3	145351	20	INTRON	INTRON	ZNF385D-AS1	ENSG00000225542.2	ENST00000662195.1:ENST00000412369.1	lncRNA	lncRNA	lncRNA	lncRNA	2	62	2	2.64309	2.8694800000000003	3.09587	0.0308646	0.00651565	0.13151	0.0735232
chr1	21691293	21691392	395914	0	-	0.343434	(0.32,0.35]	chr1	47211	8	INTRON	INTRON	USP48	ENSG00000090686.16	ENST00000400301.5:ENST00000308271.14:ENST00000374732.7:ENST00000529637.5:ENST00000464577.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	12	253	2	2.40422	2.86946	3.3347	7.52184e-4	4.4539e-6	0.0251179	0.00142022
chr2	107728146	107728246	1205831	0	-	0.2	[0,0.28]	chr2	128532	105	INTRON	INTRON	LINC01885:ENSG00000286769	ENSG00000237880.2:ENSG00000286769.1	ENST00000654481.1:ENST00000669817.1	lncRNA	lncRNA	lncRNA	lncRNA	2	62	2	2.73384	2.8694100000000002	3.00498	0.0246308	0.00876063	0.12011	0.0846118
chr1	147084615	147084685	542183	0	-	0.528571	(0.515,0.57]	chr1	63572	1	EXON_SMALL	EXON_SMALL	RNVU1-8	ENSG00000286172.1	ENST00000651973.1	snRNA	snRNA	snRNA	snRNA	5	84	2	2.31902	2.8693999999999997	3.41978	0.00493032	1.03805e-4	0.0646039	0.00915599
chr20	62919673	62919772	7362386	0	-	0.555556	(0.515,0.57]	chr20	751210	49	INTRON	INTRON	DIDO1	ENSG00000101191.17	ENST00000266070.8:ENST00000395343.6:ENST00000395340.5:ENST00000370371.8:ENST00000370368.5:ENST00000354665.8	protein_coding	protein_coding	protein_coding	protein_coding	5	84	2	2.31902	2.8693999999999997	3.41978	0.00493032	1.03805e-4	0.0646039	0.00915599
chr2	235504740	235504840	1041442	0	+	0.37	(0.35,0.378]	chr2	111217	95	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	77	2	2.56634	2.86939	3.17244	0.00487788	0.00190773	0.0607461	0.0403772
chr17	82094687	82094753	6851250	0	-	0.606061	(0.57,1]	chr17	678893	1	INTRON	INTRON	FASN	ENSG00000169710.9	ENST00000306749.4:ENST00000634990.1:ENST00000635197.1:ENST00000637525.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	44	2	2.47993	2.86938	3.25883	0.007207	1.51392e-4	0.0756278	0.0112689
chr6	20418926	20419026	2827618	0	+	0.36	(0.35,0.378]	chr6	265575	147	INTRON	INTRON	E2F3	ENSG00000112242.16	ENST00000346618.8:ENST00000535432.2	protein_coding	protein_coding	protein_coding	protein_coding	2	48	2	2.47065	2.869295	3.26794	0.0386172	0.00257067	0.142656	0.0466761
chr5	66145008	66145095	2372494	0	+	0.471264	(0.44,0.476]	chr5	228646	3	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	SREK1	ENSG00000153914.16	ENST00000521691.5:ENST00000612404.4:ENST00000523851.1:ENST00000334121.11:ENST00000520058.1:ENST00000520953.5:ENST00000522912.5:ENST00000524111.5:ENST00000380918.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	63	2	2.848	2.8692349999999998	2.89047	0.00955699	0.00215274	0.0863913	0.0417866
chr1	52403652	52403745	457066	0	-	0.473118	(0.44,0.476]	chr1	54918	11	INTRON	INTRON	ORC1	ENSG00000085840.13	ENST00000371568.8:ENST00000371566.1	protein_coding	protein_coding	protein_coding	protein_coding	2	44	2	2.81896	2.86923	2.9195	0.0120766	0.0102021	0.0962311	0.0850389
chr1	179843313	179843411	593114	0	-	0.44898	(0.44,0.476]	chr1	71080	35	UTR3	UTR3:EXON_MRNA	TOR1AIP2	ENSG00000169905.13	ENST00000367612.7:ENST00000609928.6	protein_coding	protein_coding	protein_coding	protein_coding	2	44	2	2.81896	2.86923	2.9195	0.0120766	0.0102021	0.0962311	0.0850389
chr1	182798228	182798327	272634	0	+	0.474747	(0.44,0.476]	chr1	31778	20	INTRON	INTRON	NPL	ENSG00000135838.14	ENST00000488424.5:ENST00000367554.7:ENST00000460690.5:ENST00000463899.5:ENST00000367555.5:ENST00000367553.6:ENST00000479721.5:ENST00000471010.1:ENST00000258317.6:ENST00000614468.1:ENST00000367552.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	44	2	2.81896	2.86923	2.9195	0.0120766	0.0102021	0.0962311	0.0850389
chr3	42783990	42784088	1671786	0	-	0.469388	(0.44,0.476]	chr3	170884	12	UTR3	UTR3:EXON_MRNA:INTRON	ENSG00000280571:HIGD1A	ENSG00000280571.2:ENSG00000181061.14	ENST00000648550.1:ENST00000431549.4:ENST00000321331.12	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	44	2	2.81896	2.86923	2.9195	0.0120766	0.0102021	0.0962311	0.0850389
chr7	1120957	1121057	3461670	0	-	0.47	(0.44,0.476]	chr7	323589	111	INTRON	INTRON	C7orf50	ENSG00000146540.15	ENST00000357429.10:ENST00000397100.6:ENST00000397098.8:ENST00000488073.1:ENST00000491163.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	44	2	2.81896	2.86923	2.9195	0.0120766	0.0102021	0.0962311	0.0850389
chr22	20119244	20119339	7478606	0	+	0.452632	(0.44,0.476]	chr22	762783	2	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	RANBP1	ENSG00000099901.17	ENST00000435265.5:ENST00000432879.5:ENST00000430524.6:ENST00000402752.5:ENST00000488484.1:ENST00000331821.7:ENST00000411892.5:ENST00000467920.1:ENST00000416427.5:ENST00000421656.5:ENST00000423859.5:ENST00000418705.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	48	2	1.76195	2.869105	3.97626	0.0300538	0.0252608	0.142135	0.12011
chr17	66312220	66312320	6662393	0	+	0.5	(0.476,0.515]	chr17	650320	57	INTRON	INTRON	PRKCA	ENSG00000154229.12	ENST00000413366.8:ENST00000578063.5:ENST00000583361.1:ENST00000284384.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	58	2	2.58615	2.869085	3.15202	0.00515536	0.00455841	0.0650394	0.0595107
chr2	135052985	135053081	872669	0	+	0.479167	(0.476,0.515]	chr2	97721	1	INTRON	INTRON	RAB3GAP1	ENSG00000115839.19	ENST00000539493.3:ENST00000688088.1:ENST00000693554.1:ENST00000690785.1:ENST00000689880.1:ENST00000264158.13:ENST00000686403.1:ENST00000690208.1:ENST00000691478.1:ENST00000686114.1:ENST00000685967.1:ENST00000442034.5:ENST00000425393.1:ENST00000687199.1:ENST00000691339.1:ENST00000688182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	58	2	2.58615	2.869085	3.15202	0.00515536	0.00455841	0.0650394	0.0595107
chr4	126601596	126601696	2236725	0	-	0.32	(0.28,0.32]	chr4	219023	1361	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	4	94	2	2.86389	2.868855	2.87382	0.014868	5.73871e-4	0.0989021	0.0217493
chr1	213124171	213124271	311435	0	+	0.43	(0.408,0.44]	chr1	35931	64	INTRON	INTRON	RPS6KC1	ENSG00000136643.12	ENST00000615329.4:ENST00000543354.5:ENST00000614059.4:ENST00000543470.5:ENST00000366960.8:ENST00000366959.4:ENST00000490299.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	81	2	2.32619	2.8688149999999997	3.41144	0.00239266	0.00178336	0.0450826	0.0379201
chr1	29161017	29161116	410231	0	-	0.353535	(0.35,0.378]	chr1	49403	1	INTRON	INTRON	SRSF4	ENSG00000116350.18	ENST00000373795.7:ENST00000691479.1:ENST00000634348.1:ENST00000466448.4:ENST00000605204.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	48	2	2.79643	2.86877	2.94111	0.013543	0.0104563	0.101363	0.0855102
chr8	116686768	116686868	4033535	0	-	0.37	(0.35,0.378]	chr8	368046	274	INTRON	INTRON	EIF3H	ENSG00000147677.12	ENST00000521861.6:ENST00000276682.8:ENST00000518949.5:ENST00000518995.5:ENST00000522800.5:ENST00000518034.5:ENST00000517974.1:ENST00000522453.1:ENST00000519046.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	64	2	2.28125	2.8687300000000002	3.45621	0.0182271	0.0011842	0.107842	0.031662
chr5	139310928	139311027	2499555	0	+	0.494949	(0.476,0.515]	chr5	238922	10	EXON_MRNA	EXON_MRNA:INTRON	MATR3	ENSG00000280987.4:ENSG00000015479.20	ENST00000509990.5:ENST00000506147.5:ENST00000512107.5:ENST00000361059.7:ENST00000394800.6:ENST00000502929.5:ENST00000504203.5:ENST00000509644.5:ENST00000512876.5:ENST00000513678.5:ENST00000513121.1:ENST00000504045.5:ENST00000504311.5:ENST00000502499.5:ENST00000510056.5:ENST00000511249.5:ENST00000394805.8:ENST00000507860.1:ENST00000509918.5:ENST00000503811.5:ENST00000511978.5:ENST00000618441.5:ENST00000514528.5:ENST00000504643.5:ENST00000515833.2:ENST00000514402.1:ENST00000505625.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	16	270	2	2.73577	2.8687199999999997	3.00167	4.55686e-5	9.49037e-6	0.00583644	0.0022309
chr5	176974895	176974995	2776617	0	-	0.52	(0.515,0.57]	chr5	261568	1	SS5_PROX	SS5_PROX:INTRON	UIMC1	ENSG00000087206.17	ENST00000377227.8:ENST00000511320.6:ENST00000506128.5:ENST00000512031.5:ENST00000509236.5:ENST00000417486.6:ENST00000515488.1:ENST00000507513.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	92	2	2.48529	2.8687050000000003	3.25212	9.88223e-4	2.5577e-4	0.0289028	0.0148225
chr16	89381309	89381409	6542498	0	-	0.39	(0.378,0.408]	chr16	634240	78	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000647238.1:ENST00000644045.1:ENST00000643147.1:ENST00000644139.1:ENST00000568512.6:ENST00000566973.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	177	2	1.9876	2.8687	3.7498	0.00411166	1.86065e-6	0.0564928	8.31385e-4
chr7	119667564	119667664	3628012	0	-	0.32	(0.28,0.32]	chr7	337315	1671	INTRON	INTRON	LINC02476	ENSG00000225546.6	ENST00000660268.1	lncRNA	lncRNA	lncRNA	lncRNA	7	153	2	2.34634	2.86869	3.39104	0.00156493	3.29346e-4	0.0365263	0.0167902
chr18	9568967	9569065	6945847	0	-	0.479592	(0.476,0.515]	chr18	686979	51	INTRON	INTRON	PPP4R1	ENSG00000154845.16	ENST00000400555.7:ENST00000400556.8:ENST00000285124.12:ENST00000578557.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	59	2	2.32001	2.868645	3.41728	0.0136217	0.00165726	0.101682	0.0369207
chr3	47619510	47619610	1683420	0	-	0.52	(0.515,0.57]	chr3	171972	88	INTRON	INTRON	SMARCC1	ENSG00000173473.11	ENST00000254480.10:ENST00000425518.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	32	2	1.56681	2.86859	4.17037	0.064862	0.0139194	0.179394	0.10247
chr2	9529205	9529299	1064216	0	-	0.5	(0.476,0.515]	chr2	113523	9	INTRON	INTRON	ADAM17	ENSG00000151694.14	ENST00000310823.8:ENST00000648548.1:ENST00000649227.1:ENST00000648857.1:ENST00000647979.1:ENST00000647610.1:ENST00000650116.1:ENST00000649686.1:ENST00000647622.1:ENST00000649972.1:ENST00000650241.1:ENST00000618923.2:ENST00000478059.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	78	2	2.66112	2.8685650000000003	3.07601	0.0044598	5.95211e-4	0.0592169	0.0221865
chrX	103679841	103679939	7856511	0	-	0.408163	(0.378,0.408]	chrX	801086	8	INTRON	INTRON	MORF4L2	ENSG00000123562.18	ENST00000360458.5:ENST00000441076.7:ENST00000433176.6:ENST00000451301.5:ENST00000434230.5:ENST00000418819.5:ENST00000442614.5:ENST00000492116.5:ENST00000422355.5:ENST00000474653.5:ENST00000498064.1:ENST00000467755.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	17	324	2	2.44554	2.8684149999999997	3.29129	3.27262e-4	3.19678e-7	0.0166988	2.83872e-4
chr2	97566232	97566331	1184010	0	-	0.484848	(0.476,0.515]	chr2	127031	50	INTRON	INTRON	ANKRD36B	ENSG00000196912.13	ENST00000359901.9:ENST00000258459.12:ENST00000443455.5:ENST00000419390.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	58	2	2.63396	2.8683	3.10264	0.00543163	0.00426634	0.0645052	0.0596808
chr7	10624649	10624749	3483026	0	-	0.47	(0.44,0.476]	chr7	325772	627	INTRON	INTRON	MGC4859	ENSG00000283117.1	ENST00000634803.1	lncRNA	lncRNA	lncRNA	lncRNA	4	70	2	2.42643	2.86827	3.31011	0.0033369	0.00259023	0.0528877	0.0452934
chr5	134605572	134605670	2727715	0	-	0.44898	(0.44,0.476]	chr5	256688	46	UTR3	UTR3:EXON_MRNA	SAR1B	ENSG00000152700.14	ENST00000402673.7	protein_coding	protein_coding	protein_coding	protein_coding	7	121	2	2.67424	2.86823	3.06222	8.483e-4	1.95461e-4	0.0267232	0.0122528
chr2	17782728	17782827	706849	0	+	0.30303	(0.28,0.32]	chr2	81910	9	UTR3	UTR3:EXON_MRNA	GEN1	ENSG00000178295.15	ENST00000317402.11:ENST00000381254.7	protein_coding	protein_coding	protein_coding	protein_coding	4	104	2	2.63379	2.8682049999999997	3.10262	0.00503861	0.00114045	0.0646039	0.0307966
chr2	107727946	107728046	1205829	0	-	0.37	(0.35,0.378]	chr2	128532	103	INTRON	INTRON	LINC01885:ENSG00000286769	ENSG00000237880.2:ENSG00000286769.1	ENST00000654481.1:ENST00000669817.1	lncRNA	lncRNA	lncRNA	lncRNA	8	116	2	1.46081	2.8681900000000002	4.27557	0.0324753	1.87054e-5	0.13353	0.00330057
chr6	159788868	159788954	3254699	0	-	0.627907	(0.57,1]	chr6	302553	1	EXON_LNCRNA	EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TCP1	ENSG00000120438.12	ENST00000321394.12:ENST00000544255.5:ENST00000420894.6:ENST00000392168.6:ENST00000539756.1:ENST00000543532.5:ENST00000538530.5:ENST00000538128.5:ENST00000543517.5:ENST00000537390.5:ENST00000536607.1:ENST00000546023.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	32	2	2.33295	2.86814	3.40333	0.0122896	9.20604e-4	0.091087	0.0278392
chr22	21787756	21787856	7560581	0	-	0.51	(0.476,0.515]	chr22	773361	1	SS5_PROX	SS5_PROX:INTRON	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	8	130	2	2.41217	2.86806	3.32395	4.92648e-4	2.34553e-4	0.0200992	0.0140266
chr17	82461212	82461311	6692289	0	+	0.414141	(0.408,0.44]	chr17	654554	3	INTRON	INTRON	NARF	ENSG00000141562.19	ENST00000579198.5:ENST00000390006.8:ENST00000583181.5:ENST00000584192.5:ENST00000580296.5:ENST00000345415.11:ENST00000581202.5:ENST00000374611.9:ENST00000457415.7:ENST00000581795.5:ENST00000584411.5:ENST00000577812.5:ENST00000581743.5:ENST00000577432.5:ENST00000582907.5:ENST00000309794.16:ENST00000578082.5:ENST00000580748.1:ENST00000577410.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	145	2	2.82859	2.86803	2.90747	4.77325e-4	7.73711e-5	0.0202392	0.00735438
chr6	34365967	34366067	3084507	0	-	0.43	(0.408,0.44]	chr6	288633	236	INTRON	INTRON	NUDT3:RPS10-NUDT3	ENSG00000272325.2:ENSG00000270800.3	ENST00000607016.2:ENST00000639725.1:ENST00000639877.1:ENST00000605528.2	protein_coding	protein_coding	protein_coding	protein_coding	4	79	2	2.79124	2.8680250000000003	2.94481	0.00276922	0.00110214	0.0469265	0.03038
chr2	61018807	61018898	786146	0	+	0.362637	(0.35,0.378]	chr2	88443	7	UTR3	UTR3:EXON_MRNA:INTRON	PEX13	ENSG00000162928.9	ENST00000444100.2:ENST00000401576.1:ENST00000295030.6:ENST00000472678.1:ENST00000414712.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	64	2	2.32464	2.8680149999999998	3.41139	0.0159285	0.00143263	0.101453	0.0347139
chr17	44925099	44925197	6781562	0	-	0.591837	(0.57,1]	chr17	668898	5	UTR3	UTR3:EXON_MRNA	KIF18B	ENSG00000186185.14	ENST00000587309.5:ENST00000593135.6	protein_coding	protein_coding	protein_coding	protein_coding	6	61	2	2.58898	2.86801	3.14704	0.00134929	4.92991e-5	0.0338207	0.00608708
chr2	161202164	161202263	900749	0	+	0.373737	(0.35,0.378]	chr2	99623	48	INTRON	INTRON	TANK	ENSG00000136560.14	ENST00000259075.6:ENST00000432002.5:ENST00000440506.5:ENST00000429217.5:ENST00000406287.5:ENST00000402568.5:ENST00000457887.5:ENST00000392749.7:ENST00000432692.6:ENST00000441987.5:ENST00000405852.5:ENST00000456358.5:ENST00000468831.5:ENST00000403609.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	49	2	2.32443	2.86791	3.41139	0.0544216	0.00143263	0.164972	0.0347139
chr3	47151338	47151438	1681478	0	-	0.25	[0,0.28]	chr3	171624	243	INTRON	INTRON	SETD2	ENSG00000181555.22	ENST00000691544.1:ENST00000638947.2:ENST00000409792.4:ENST00000412450.1	protein_coding	protein_coding	protein_coding	protein_coding	4	101	2	2.42871	2.86783	3.30695	0.00469836	0.00461175	0.0626113	0.0600108
chr12	116219046	116219146	5424962	0	-	0.31	(0.28,0.32]	chr12	518271	379	INTRON	INTRON	MED13L	ENSG00000123066.9	ENST00000281928.9:ENST00000650226.1:ENST00000548743.2:ENST00000647567.1:ENST00000551197.2	protein_coding	protein_coding	protein_coding	protein_coding	2	55	2	2.51488	2.86781	3.22074	0.0380957	0.00362783	0.141678	0.055479
chr7	4724445	4724545	3270337	0	+	0.53	(0.515,0.57]	chr7	303884	412	INTRON	INTRON	FOXK1	ENSG00000164916.11	ENST00000328914.5	protein_coding	protein_coding	protein_coding	protein_coding	2	38	2	2.60899	2.86781	3.12663	0.0232669	0.00374498	0.118148	0.0562234
chr1	167698736	167698835	247651	0	+	0.363636	(0.35,0.378]	chr1	29471	5	INTRON	INTRON	RCSD1	ENSG00000198771.11	ENST00000537350.5:ENST00000367854.8	protein_coding	protein_coding	protein_coding	protein_coding	2	34	2	1.93432	2.8678049999999997	3.80129	0.0504034	0.0481438	0.17488	0.153019
chr1	229557635	229557735	653763	0	-	0.4	(0.378,0.408]	chr1	77489	1	SS5_PROX	SS5_PROX:INTRON	ABCB10	ENSG00000135776.5	ENST00000344517.5	protein_coding	protein_coding	protein_coding	protein_coding	4	74	2	1.86598	2.867745	3.86951	0.0300232	1.55755e-4	0.129138	0.0106835
chr19	3385837	3385937	6999819	0	+	0.51	(0.476,0.515]	chr19	694173	32	INTRON	INTRON	NFIC	ENSG00000141905.19	ENST00000641145.1:ENST00000589123.5:ENST00000395111.7:ENST00000586919.5:ENST00000341919.7:ENST00000443272.3:ENST00000590282.5	protein_coding	protein_coding	protein_coding	protein_coding	3	60	2	2.66112	2.86767	3.07422	0.00506023	0.0044598	0.0646039	0.0592169
chr8	129488121	129488221	4060157	0	-	0.48	(0.476,0.515]	chr8	369613	2	SS5_PROX	SS5_PROX:INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1:ENST00000676273.1:ENST00000667643.1:ENST00000668791.1:ENST00000663716.1:ENST00000663572.1:ENST00000676148.1:ENST00000667962.1:ENST00000674877.1:ENST00000675316.1:ENST00000674656.1:ENST00000446592.7:ENST00000667341.1:ENST00000675186.1:ENST00000652971.1:ENST00000661447.1:ENST00000674863.1:ENST00000675498.1:ENST00000675527.1:ENST00000676108.1:ENST00000657647.1:ENST00000675589.1:ENST00000675913.1:ENST00000675109.1:ENST00000671632.1:ENST00000671311.1:ENST00000676099.1:ENST00000660652.1:ENST00000675522.1:ENST00000675183.1:ENST00000658861.1:ENST00000663991.1:ENST00000675044.1:ENST00000675435.1:ENST00000674639.1:ENST00000676069.1:ENST00000675532.1:ENST00000674762.1:ENST00000523151.6:ENST00000675948.1:ENST00000665364.1:ENST00000657251.1:ENST00000675166.1:ENST00000674883.1:ENST00000675867.1:ENST00000674580.1:ENST00000675393.1:ENST00000520048.1:ENST00000674906.1:ENST00000676030.1:ENST00000670588.1:ENST00000675072.1:ENST00000664936.1:ENST00000652914.1:ENST00000657069.1	lncRNA	lncRNA	lncRNA	lncRNA	3	60	2	2.66112	2.86767	3.07422	0.00506023	0.0044598	0.0646039	0.0592169
chr5	149548545	149548643	2751054	0	-	0.530612	(0.515,0.57]	chr5	259084	29	INTRON	INTRON	CSNK1A1	ENSG00000113712.19	ENST00000261798.10:ENST00000377843.8:ENST00000657001.1:ENST00000515768.6:ENST00000606719.6:ENST00000657462.1:ENST00000661952.1:ENST00000504676.5:ENST00000515435.5:ENST00000662268.1:ENST00000657706.1:ENST00000670598.1:ENST00000523203.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	62	2	2.364	2.867625	3.37125	0.00447856	0.00136343	0.0593175	0.0339121
chr6	36594755	36594855	2854415	0	+	0.38	(0.378,0.408]	chr6	269768	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	SRSF3	ENSG00000112081.17	ENST00000613941.4:ENST00000373715.11:ENST00000620242.1:ENST00000339436.11:ENST00000477442.6:ENST00000620941.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	235	2	2.78139	2.86759	2.95379	2.62263e-4	3.5165e-5	0.0143317	0.00499983
chr3	138580971	138581070	1829506	0	-	0.50505	(0.476,0.515]	chr3	183892	76	INTRON	INTRON	CEP70	ENSG00000114107.9	ENST00000264982.8:ENST00000489254.5:ENST00000484888.5:ENST00000474781.5:ENST00000481834.5:ENST00000468900.5:ENST00000462419.5:ENST00000478673.5:ENST00000464035.5:ENST00000470159.5:ENST00000485115.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	43	2	1.38864	2.86756	4.34648	0.0547008	0.0193566	0.182743	0.108861
chr11	108102300	108102400	4856688	0	+	0.53	(0.515,0.57]	chr11	452969	34	INTRON	INTRON	CUL5	ENSG00000166266.14	ENST00000393094.7:ENST00000531427.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	38	2	2.83188	2.867495	2.90311	0.0108207	0.0094233	0.0920575	0.0817766
chr2	9527198	9527285	1064193	0	-	0.517241	(0.515,0.57]	chr2	113516	6	INTRON	INTRON	ADAM17	ENSG00000151694.14	ENST00000310823.8:ENST00000648548.1:ENST00000649227.1:ENST00000648857.1:ENST00000647979.1:ENST00000647610.1:ENST00000650116.1:ENST00000649686.1:ENST00000647622.1:ENST00000649972.1:ENST00000650241.1:ENST00000618923.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	38	2	2.83188	2.867495	2.90311	0.0108207	0.0094233	0.0920575	0.0817766
chr19	50801349	50801449	7203154	0	-	0.57	(0.515,0.57]	chr19	730905	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	C19orf48	ENSG00000167747.16	ENST00000641834.2:ENST00000596287.6:ENST00000597705.6:ENST00000693315.1:ENST00000597493.6:ENST00000692421.1:ENST00000598463.5:ENST00000596655.1:ENST00000593287.5:ENST00000600373.5:ENST00000601267.5:ENST00000595794.5:ENST00000596554.5:ENST00000599004.1	transcribed_unitary_pseudogene	retained_intron	transcribed_unitary_pseudogene	retained_intron:processed_transcript	3	33	2	1.69407	2.867465	4.04086	0.0459452	0.0197045	0.149888	0.120063
chr6	28367678	28367778	2840211	0	+	0.41	(0.408,0.44]	chr6	266704	15	UTR3	UTR3:EXON_MRNA	ZKSCAN3	ENSG00000189298.14	ENST00000252211.7:ENST00000377255.3	protein_coding	protein_coding	protein_coding	protein_coding	5	84	2	2.18269	2.86742	3.55215	0.0055386	7.01039e-4	0.0648867	0.0241881
chr12	55817265	55817365	5332827	0	-	0.54	(0.515,0.57]	chr12	509171	2	SS5_PROX	SS5_PROX:INTRON	SARNP	ENSG00000205323.9	ENST00000546604.5:ENST00000552884.5:ENST00000336133.8:ENST00000552080.1:ENST00000552207.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	53	2	2.11313	2.867385	3.62164	0.0256725	5.41944e-4	0.133676	0.0215026
chr10	32015108	32015208	4590385	0	-	0.19	[0,0.28]	chr10	423185	2	SS5_PROX	SS5_PROX:INTRON	KIF5B	ENSG00000170759.11	ENST00000302418.5	protein_coding	protein_coding	protein_coding	protein_coding	2	62	2	2.59548	2.86737	3.13926	0.0346067	0.00563224	0.136649	0.0678837
chr20	17957437	17957537	7320454	0	-	0.27	[0,0.28]	chr20	745327	4	SS3_PROX	SS3_PROX:INTRON	SNX5	ENSG00000089006.17	ENST00000377768.7:ENST00000490175.5:ENST00000483485.5:ENST00000377759.9:ENST00000431277.5:ENST00000419004.2:ENST00000474883.5:ENST00000475716.5:ENST00000469704.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	62	2	2.77716	2.867225	2.95729	0.022039	0.0101824	0.115395	0.089002
chr7	107195038	107195136	3378629	0	+	0.469388	(0.44,0.476]	chr7	316360	44	INTRON	INTRON	HBP1	ENSG00000105856.14	ENST00000468410.5:ENST00000222574.9:ENST00000485846.5:ENST00000463202.5:ENST00000498408.1:ENST00000461963.1:ENST00000483809.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	108	2	2.15225	2.86722	3.58219	0.00129761	8.57842e-4	0.0333764	0.0267428
chr1	235320116	235320216	663782	0	-	0.44	(0.408,0.44]	chr1	78552	590	INTRON	INTRON	ARID4B	ENSG00000054267.22	ENST00000349213.7:ENST00000366603.6:ENST00000264183.9:ENST00000421364.5:ENST00000491632.5:ENST00000418304.1:ENST00000466653.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	134	2	2.15507	2.86714	3.57921	0.00618525	5.51754e-6	0.0677395	0.0016322
chr11	9228681	9228780	4908705	0	-	0.454545	(0.44,0.476]	chr11	460107	207	INTRON	INTRON	DENND5A	ENSG00000184014.9	ENST00000328194.8:ENST00000681203.1:ENST00000530780.2:ENST00000679999.1:ENST00000680470.1:ENST00000680554.1:ENST00000681425.1:ENST00000679568.1:ENST00000679446.1:ENST00000680294.1:ENST00000680742.1:ENST00000680885.1:ENST00000530044.5:ENST00000526707.5:ENST00000532696.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	71	2	2.6062	2.867095	3.12799	0.0050635	0.00148054	0.0621733	0.0353633
chr11	47541626	47541725	4950288	0	-	0.444444	(0.44,0.476]	chr11	464246	170	INTRON	INTRON	CELF1	ENSG00000149187.19	ENST00000310513.10:ENST00000687097.1:ENST00000531165.5:ENST00000530151.5:ENST00000525841.5:ENST00000526419.1	protein_coding	protein_coding	protein_coding	protein_coding	4	71	2	2.18344	2.86706	3.55068	0.0102102	7.06861e-4	0.0850389	0.0241881
chr17	42505637	42505736	6611780	0	+	0.393939	(0.378,0.408]	chr17	644172	24	INTRON	INTRON	ATP6V0A1	ENSG00000033627.17	ENST00000393829.6:ENST00000343619.9:ENST00000537728.5:ENST00000264649.10:ENST00000585525.5:ENST00000544137.5:ENST00000587510.5:ENST00000586201.5:ENST00000588138.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	61	2	2.26009	2.86693	3.47377	0.0188651	0.00103087	0.108861	0.0294094
chr17	81562159	81562258	6848826	0	-	0.494949	(0.476,0.515]	chr17	678117	5	UTR3	UTR3:EXON_MRNA:INTRON	NPLOC4	ENSG00000182446.14	ENST00000331134.11:ENST00000572760.5:ENST00000572346.5:ENST00000573519.5:ENST00000573876.1:ENST00000571714.5:ENST00000572824.1:ENST00000573212.5:ENST00000576713.6:ENST00000374747.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	164	2	2.71808	2.866905	3.01573	4.59217e-4	2.41841e-5	0.01978	0.00385018
chr7	12400763	12400863	3485410	0	-	0.29	(0.28,0.32]	chr7	325970	66	INTRON	INTRON	VWDE	ENSG00000146530.15	ENST00000275358.8:ENST00000452576.6:ENST00000521169.5:ENST00000326715.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	169	2	2.56699	2.866815	3.16664	0.00100111	2.46614e-4	0.0291511	0.0145064
chr9	111372807	111372894	4314133	0	-	0.45977	(0.44,0.476]	chr9	396623	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ECPAS	ENSG00000136813.15	ENST00000684092.1:ENST00000338205.9:ENST00000259335.8	protein_coding	protein_coding	protein_coding	protein_coding	4	72	2	2.32184	2.8668	3.41176	0.00609071	0.00130987	0.0676501	0.0333932
chr19	11090015	11090115	7016817	0	+	0.5	(0.476,0.515]	chr19	697417	4	SS5_PROX	SS5_PROX:INTRON	LDLR	ENSG00000130164.14	ENST00000557933.5:ENST00000558518.6:ENST00000545707.5:ENST00000535915.5:ENST00000455727.6:ENST00000557958.1:ENST00000560502.5:ENST00000558013.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	98	2	2.29359	2.866765	3.43994	0.00584957	1.29236e-4	0.0689807	0.0103343
chr4	88750937	88751037	2199882	0	-	0.5	(0.476,0.515]	chr4	215910	3	SS3_PROX	SS3_PROX:INTRON	FAM13A	ENSG00000138640.15	ENST00000395002.6:ENST00000264344.10:ENST00000511573.5:ENST00000503556.5:ENST00000511976.5:ENST00000508369.5:ENST00000513837.5:ENST00000504836.5:ENST00000507352.1:ENST00000515155.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	59	2	2.10874	2.86669	3.62464	0.0285608	5.079e-4	0.12666	0.0202328
chr3	128066508	128066608	1496674	0	+	0.55	(0.515,0.57]	chr3	156285	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	SEC61A1	ENSG00000058262.10	ENST00000464451.5:ENST00000243253.8:ENST00000424880.2:ENST00000483956.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	166	2	2.14892	2.866685	3.58445	0.00139353	8.04714e-7	0.0340865	5.07271e-4
chr22	19954548	19954647	7477532	0	+	0.464646	(0.44,0.476]	chr22	762571	2	INTRON	INTRON	COMT	ENSG00000093010.15	ENST00000676678.1:ENST00000403184.5:ENST00000361682.11:ENST00000403710.5:ENST00000407537.5:ENST00000467943.5:ENST00000678868.1:ENST00000678769.1:ENST00000428707.2:ENST00000412786.5:ENST00000207636.9:ENST00000406520.7:ENST00000678255.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	99	2	2.82351	2.866655	2.9098	0.00191049	4.57573e-4	0.0403772	0.0197167
chr13	98554595	98554695	5643568	0	-	0.41	(0.408,0.44]	chr13	537505	327	INTRON	INTRON	STK24	ENSG00000102572.15	ENST00000539966.6:ENST00000397517.6:ENST00000491878.5:ENST00000481288.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	44	2	2.58624	2.86665	3.14706	0.0273686	0.00382411	0.123904	0.0562562
chr3	37112114	37112214	1655985	0	-	0.5	(0.476,0.515]	chr3	169974	3	INTRON	INTRON	LRRFIP2	ENSG00000093167.18	ENST00000336686.9:ENST00000354379.8:ENST00000421276.6:ENST00000396428.6:ENST00000440230.5:ENST00000416425.5	protein_coding	protein_coding	protein_coding	protein_coding	8	143	2	2.45353	2.866445	3.27936	9.04659e-4	3.89817e-5	0.0278365	0.00504677
chr4	174319446	174319544	2082951	0	+	0.214286	[0,0.28]	chr4	205864	22	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	CEP44	ENSG00000164118.13	ENST00000457424.6:ENST00000396791.7:ENST00000503780.6:ENST00000426172.3:ENST00000296519.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	101	2	2.45531	2.8661950000000003	3.27708	0.00517359	0.00415834	0.0631676	0.0590857
chr11	47743452	47743543	4951167	0	-	0.373626	(0.35,0.378]	chr11	464413	1	SS5_PROX	SS5_PROX:INTRON	FNBP4	ENSG00000109920.13	ENST00000263773.10:ENST00000528388.5:ENST00000534003.5:ENST00000527894.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	64	2	2.19034	2.8661	3.54186	0.023941	8.14353e-4	0.119443	0.02604
chr2	131061281	131061380	1228769	0	-	0.343434	(0.32,0.35]	chr2	130981	52	INTRON	INTRON	FAM168B	ENSG00000152102.18	ENST00000389915.4:ENST00000409185.5	protein_coding	protein_coding	protein_coding	protein_coding	3	68	2	2.78706	2.86608	2.9451	0.011051	0.00253645	0.0873897	0.0465056
chrX	13349604	13349704	7622452	0	+	0.59	(0.57,1]	chrX	780353	79	INTRON	INTRON	LINC01203	ENSG00000226985.7	ENST00000669963.1:ENST00000661545.1:ENST00000659526.1:ENST00000656410.1:ENST00000661104.1:ENST00000456091.2:ENST00000655502.1:ENST00000671651.1:ENST00000656979.1:ENST00000656271.1:ENST00000661629.1:ENST00000661464.1:ENST00000668192.1:ENST00000665887.1:ENST00000659191.1:ENST00000667868.1:ENST00000653729.1:ENST00000656111.1	lncRNA	lncRNA	lncRNA	lncRNA	6	57	2	2.53502	2.8660449999999997	3.19707	6.60462e-4	2.16062e-4	0.023462	0.0129138
chr6	68711513	68711613	2887081	0	+	0.39	(0.378,0.408]	chr6	273730	717	INTRON	INTRON	ADGRB3	ENSG00000135298.15	ENST00000370598.6:ENST00000684661.1:ENST00000546190.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	89	2	2.3043	2.8659	3.4275	0.0035117	0.00126053	0.0525467	0.03295
chr1	168246233	168246333	250367	0	+	0.37	(0.35,0.378]	chr1	29769	38	UTR3	UTR3:EXON_MRNA	SFT2D2	ENSG00000213064.10	ENST00000271375.7	protein_coding	protein_coding	protein_coding	protein_coding	5	87	2	2.18494	2.8658900000000003	3.54684	0.0047516	0.00119142	0.0635784	0.0315806
chr2	10130160	10130256	690797	0	+	0.375	(0.35,0.378]	chr2	81086	9	UTR3	UTR3:EXON_MRNA:INTRON	RRM2	ENSG00000171848.16	ENST00000641198.1:ENST00000360566.6:ENST00000652660.1:ENST00000641498.1:ENST00000304567.10:ENST00000615152.5:ENST00000646978.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	41	2	1.6599	2.8658799999999998	4.07186	0.0545616	0.0279478	0.165292	0.137011
chr1	29085715	29085814	60697	0	+	0.484848	(0.476,0.515]	chr1	7763	12	INTRON	INTRON	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000373798.5:ENST00000649674.1:ENST00000343067.9:ENST00000349460.9:ENST00000646871.1:ENST00000488277.1:ENST00000490308.2:ENST00000650132.1:ENST00000649992.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	58	2	2.68023	2.865875	3.05152	0.0064848	0.00353671	0.0699952	0.0546236
chr16	58600011	58600110	6496084	0	-	0.515152	(0.476,0.515]	chr16	628638	1	INTRON	INTRON	CNOT1	ENSG00000125107.19	ENST00000317147.10:ENST00000569240.5:ENST00000567188.5:ENST00000441024.6:ENST00000565605.5:ENST00000564557.1:ENST00000569916.1:ENST00000565697.1:ENST00000569020.5:ENST00000568158.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	58	2	2.68023	2.865875	3.05152	0.0064848	0.00353671	0.0699952	0.0546236
chr7	5204839	5204939	3272108	0	+	0.51	(0.476,0.515]	chr7	304097	48	INTRON	INTRON	WIPI2	ENSG00000157954.15	ENST00000401525.7:ENST00000288828.9:ENST00000404704.7:ENST00000466014.5:ENST00000485854.5:ENST00000382384.6:ENST00000496867.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	58	2	2.68023	2.865875	3.05152	0.0064848	0.00353671	0.0699952	0.0546236
chr14	31022016	31022115	5857830	0	-	0.434343	(0.408,0.44]	chr14	556512	69	INTRON	INTRON	STRN3	ENSG00000196792.12	ENST00000355683.9:ENST00000357479.10:ENST00000555358.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	127	2	1.79857	2.86583	3.93309	0.00359183	1.78185e-4	0.0551259	0.0121697
chr3	41202977	41203077	1403059	0	+	0.31	(0.28,0.32]	chr3	147417	22	INTRON	INTRON	CTNNB1	ENSG00000168036.18	ENST00000643541.1:ENST00000426215.5:ENST00000645210.1:ENST00000646381.1:ENST00000405570.6:ENST00000642248.1:ENST00000433400.6:ENST00000642992.1:ENST00000431914.6:ENST00000642836.1:ENST00000396185.8:ENST00000642986.1:ENST00000644678.1:ENST00000643031.1:ENST00000396183.7:ENST00000645982.1:ENST00000453024.6:ENST00000645900.1:ENST00000647264.1:ENST00000646174.1:ENST00000643992.1:ENST00000642886.1:ENST00000647390.1:ENST00000643052.1:ENST00000488914.2:ENST00000349496.11:ENST00000642426.1:ENST00000646074.1:ENST00000645276.1:ENST00000644138.1:ENST00000646116.1:ENST00000644873.1:ENST00000643865.1:ENST00000644867.1:ENST00000646725.1:ENST00000645493.1:ENST00000646369.1:ENST00000643977.1:ENST00000647413.1:ENST00000644524.1:ENST00000645305.1:ENST00000643297.1:ENST00000450969.6:ENST00000642315.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	184	2	2.63684	2.86577	3.0947	3.68975e-4	3.45099e-4	0.0173093	0.0172825
chr1	32173778	32173877	64128	0	+	0.454545	(0.44,0.476]	chr1	8150	30	UTR3	UTR3:EXON_MRNA	KPNA6	ENSG00000025800.14	ENST00000373625.8	protein_coding	protein_coding	protein_coding	protein_coding	3	59	2	2.47339	2.8657000000000004	3.25801	0.0090196	0.00248185	0.080367	0.0460771
chr22	49654624	49654724	7602634	0	-	0.42	(0.408,0.44]	chr22	778594	272	INTRON	INTRON	MIR3667HG	ENSG00000188511.13	ENST00000414287.5:ENST00000416411.1:ENST00000689875.1:ENST00000400023.5:ENST00000405854.5	lncRNA	lncRNA	lncRNA	lncRNA	24	374	2	1.96995	2.86564	3.76133	8.15141e-4	4.05131e-8	0.0263737	8.15344e-5
chr19	3978472	3978572	7119091	0	-	0.58	(0.57,1]	chr19	716073	3	SS3_PROX	SS3_PROX:INTRON	EEF2	ENSG00000167658.16	ENST00000309311.7:ENST00000596417.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	16	138	2	2.58716	2.86555	3.14394	1.17552e-5	6.41729e-6	0.0025307	0.00191981
chrX	73852123	73852223	7838045	0	-	0.49	(0.476,0.515]	chrX	799611	148	EXON_LNCRNA	EXON_LNCRNA	XIST	ENSG00000229807.13	ENST00000429829.6	lncRNA	lncRNA	lncRNA	lncRNA	12	213	2	2.86511	2.8653399999999998	2.86557	1.00925e-4	1.79953e-5	0.00906611	0.00323573
chr6	132772492	132772577	3222555	0	-	0.329412	(0.32,0.35]	chr6	299594	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SLC18B1	ENSG00000146409.12	ENST00000275227.9:ENST00000647932.1:ENST00000650278.1:ENST00000650136.1:ENST00000650298.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	53	2	2.23182	2.865255	3.49869	0.068598	0.00108004	0.184298	0.0300133
chr5	179838670	179838768	2780059	0	-	0.530612	(0.515,0.57]	chr5	262418	9	UTR3	UTR3:EXON_MRNA:INTRON	MRNIP	ENSG00000161010.16	ENST00000522663.5:ENST00000518235.5:ENST00000520698.5:ENST00000376931.6:ENST00000523267.1:ENST00000523084.5:ENST00000292586.11:ENST00000518219.5:ENST00000521299.5:ENST00000521333.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	131	2	2.57912	2.865225	3.15133	6.01485e-4	2.75321e-5	0.0223465	0.00430942
chr1	1111641	1111740	358768	0	-	0.646465	(0.57,1]	chr1	41375	44	INTRON	INTRON	C1orf159	ENSG00000131591.18	ENST00000379339.5:ENST00000379325.7:ENST00000421241.7:ENST00000467751.5:ENST00000477196.5:ENST00000434641.5:ENST00000482816.5:ENST00000462097.5:ENST00000475119.5:ENST00000472741.5:ENST00000480643.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	34	2	2.79889	2.865195	2.9315	0.0110274	9.1984e-4	0.0927187	0.0278396
chr1	15885862	15885961	35046	0	+	0.363636	(0.35,0.378]	chr1	4272	88	INTRON	INTRON	SPEN	ENSG00000065526.12	ENST00000673875.1:ENST00000375759.8:ENST00000438066.1:ENST00000442985.1	protein_coding	protein_coding	protein_coding	protein_coding	5	87	2	2.21686	2.86517	3.51348	0.00414535	0.00136294	0.0589266	0.0336321
chr11	86001558	86001658	5014152	0	-	0.46	(0.44,0.476]	chr11	472963	4	SS3_PROX	SS3_PROX:INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000630913.2:ENST00000528398.5:ENST00000356360.9:ENST00000534412.5:ENST00000533350.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	39	2	1.60176	2.865095	4.12843	0.0389597	0.0337192	0.160861	0.134145
chr10	70426725	70426825	4447303	0	+	0.36	(0.35,0.378]	chr10	410355	51	UTR3	UTR3:EXON_MRNA	EIF4EBP2	ENSG00000148730.7	ENST00000373218.5	protein_coding	protein_coding	protein_coding	protein_coding	10	205	2	2.33614	2.8649750000000003	3.39381	8.17323e-4	1.58164e-5	0.0261265	0.00318411
chr1	44960603	44960703	437533	0	-	0.4	(0.378,0.408]	chr1	52963	13	INTRON	INTRON	EIF2B3	ENSG00000070785.17	ENST00000620860.4:ENST00000360403.7:ENST00000372183.7:ENST00000480675.5:ENST00000477953.5:ENST00000372182.6:ENST00000487532.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	114	2	2.28793	2.86495	3.44197	0.00291235	1.52249e-4	0.0494641	0.0112857
chr11	86014369	86014469	5014287	0	-	0.4	(0.378,0.408]	chr11	472989	1	SS5_PROX	SS5_PROX:INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000630913.2:ENST00000528398.5:ENST00000356360.9:ENST00000534412.5:ENST00000531771.5:ENST00000531558.1:ENST00000531930.5:ENST00000532041.5:ENST00000525162.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	73	2	2.53602	2.86485	3.19368	0.00426861	0.0020933	0.0573912	0.0424943
chr4	73203997	73204097	2160278	0	-	0.39	(0.378,0.408]	chr4	212794	261	INTRON	INTRON	ANKRD17	ENSG00000132466.20	ENST00000358602.9:ENST00000558247.5:ENST00000330838.10:ENST00000509867.6:ENST00000561029.1:ENST00000559367.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	83	2	2.256	2.86461	3.47322	0.00336115	0.00147803	0.0532154	0.0348908
chr2	210011619	210011717	1000414	0	+	0.377551	(0.35,0.378]	chr2	107384	15	INTRON	INTRON	RPE	ENSG00000197713.15	ENST00000354506.10:ENST00000436630.6:ENST00000408981.6:ENST00000429921.5:ENST00000454822.5:ENST00000453724.5:ENST00000359429.11:ENST00000438265.5:ENST00000429907.5:ENST00000438204.6:ENST00000452025.5:ENST00000445268.5:ENST00000441588.5:ENST00000438191.1:ENST00000411934.6:ENST00000435437.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	76	2	2.32061	2.86456	3.40851	0.00545884	0.00205747	0.0669938	0.0409869
chr11	16330331	16330430	4923576	0	-	0.50505	(0.476,0.515]	chr11	461196	113	INTRON	INTRON	SOX6	ENSG00000110693.19	ENST00000396356.7:ENST00000655819.1:ENST00000683767.1:ENST00000316399.10:ENST00000528252.5:ENST00000528429.5:ENST00000527619.6:ENST00000533411.5:ENST00000530378.5:ENST00000533870.1:ENST00000533658.5:ENST00000526673.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	71	2	2.62645	2.864545	3.10264	0.00543163	0.00135678	0.0645052	0.0339121
chr15	82371160	82371260	6075692	0	+	0.48	(0.476,0.515]	chr15	578727	154	INTRON	INTRON	UBE2Q2P2	ENSG00000259429.5	ENST00000618775.4	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	18	314	2	2.8317	2.8643549999999998	2.89701	4.1172e-5	2.9144e-6	0.00544123	0.00109445
chr15	63586111	63586210	6042742	0	+	0.323232	(0.32,0.35]	chr15	575454	114	INTRON	INTRON	USP3	ENSG00000140455.17	ENST00000540797.5:ENST00000380324.8:ENST00000558157.5:ENST00000559873.5:ENST00000559192.5:ENST00000268049.11:ENST00000558285.5:ENST00000559257.5:ENST00000538686.6:ENST00000559711.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	92	2	2.4961	2.864265	3.23243	0.00967886	3.30385e-4	0.0828038	0.0161444
chr17	45149100	45149190	6617861	0	+	0.3	(0.28,0.32]	chr17	645380	8	UTR5	UTR5:EXON_MRNA	HEXIM1	ENSG00000186834.4	ENST00000332499.4	protein_coding	protein_coding	protein_coding	protein_coding	10	191	2	2.0824	2.864185	3.64597	0.00187193	1.00082e-4	0.0400851	0.00904854
chr3	73050850	73050950	1452498	0	+	0.32	(0.28,0.32]	chr3	152969	31	INTRON	INTRON	PPP4R2	ENSG00000163605.15	ENST00000482242.5:ENST00000356692.10:ENST00000470976.1:ENST00000488810.5:ENST00000476505.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	101	2	2.17818	2.864065	3.54995	0.00555379	0.00157396	0.0675078	0.0361918
chr4	128073859	128073959	2042720	0	+	0.4	(0.378,0.408]	chr4	202845	113	INTRON	INTRON	LARP1B	ENSG00000138709.19	ENST00000512292.5:ENST00000326639.11:ENST00000508819.5:ENST00000394288.7:ENST00000432347.6:ENST00000649983.1:ENST00000650359.1:ENST00000648358.1	protein_coding	protein_coding	protein_coding	protein_coding	3	62	2	2.00398	2.863975	3.72397	0.0393906	3.23378e-4	0.143072	0.0159645
chr9	111374438	111374538	4314151	0	-	0.39	(0.378,0.408]	chr9	396633	4	SS3_PROX	SS3_PROX:INTRON	ECPAS	ENSG00000136813.15	ENST00000684092.1:ENST00000338205.9:ENST00000259335.8	protein_coding	protein_coding	protein_coding	protein_coding	3	62	2	2.00398	2.863975	3.72397	0.0393906	3.23378e-4	0.143072	0.0159645
chr1	205713217	205713317	623511	0	-	0.23	[0,0.28]	chr1	74160	5	UTR3	UTR3:EXON_MRNA	NUCKS1	ENSG00000069275.13	ENST00000367142.5	protein_coding	protein_coding	protein_coding	protein_coding	9	242	2	2.85506	2.86396	2.87286	6.15426e-4	1.62705e-4	0.0228875	0.0109774
chr2	25798686	25798785	1084736	0	-	0.525253	(0.515,0.57]	chr2	115929	42	INTRON	INTRON	ASXL2	ENSG00000143970.18	ENST00000435504.9:ENST00000336112.9:ENST00000497092.1	protein_coding	protein_coding	protein_coding	protein_coding	4	67	2	2.7208	2.863865	3.00693	0.00306828	7.26845e-4	0.0494933	0.0245647
chr3	186973267	186973366	1586604	0	+	0.585859	(0.57,1]	chr3	164332	90	INTRON	INTRON	ST6GAL1	ENSG00000073849.16	ENST00000676786.1:ENST00000169298.8:ENST00000457772.6:ENST00000455441.5:ENST00000427315.5:ENST00000677292.1:ENST00000458216.5:ENST00000430309.5:ENST00000417392.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	43	2	2.56996	2.863855	3.15775	0.00499145	2.72513e-4	0.0646039	0.0151392
chr22	20111187	20111286	7478557	0	+	0.616162	(0.57,1]	chr22	762762	12	UTR3	UTR3:EXON_MRNA	DGCR8	ENSG00000128191.16	ENST00000383024.6:ENST00000351989.8:ENST00000495826.5:ENST00000407755.1:ENST00000498171.5:ENST00000475941.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	80	2	2.50164	2.863775	3.22591	8.10609e-4	6.62693e-6	0.0259609	0.00194394
chr1	16637067	16637167	383751	0	-	0.42	(0.408,0.44]	chr1	45226	15	INTRON	INTRON	CROCCP2	ENSG00000215908.10	ENST00000639456.1:ENST00000412962.4:ENST00000635081.1:ENST00000362058.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	8	144	2	2.67594	2.8636600000000003	3.05138	2.31493e-4	1.93157e-4	0.0139549	0.012131
chr22	16625886	16625985	7473605	0	+	0.252525	[0,0.28]	chr22	762000	26	INTRON	INTRON	TPTEP1	ENSG00000100181.22	ENST00000558085.6:ENST00000400593.6:ENST00000426585.5:ENST00000383140.7	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	2	62	2	2.81922	2.863595	2.90797	0.0197411	0.0118539	0.109608	0.0962115
chr10	11542645	11542744	4555373	0	-	0.464646	(0.44,0.476]	chr10	420447	105	INTRON	INTRON	USP6NL	ENSG00000148429.15	ENST00000609104.6:ENST00000379237.6	protein_coding	protein_coding	protein_coding	protein_coding	3	59	2	2.86231	2.863415	2.86452	0.012214	0.00159222	0.0910127	0.0367961
chr17	15538545	15538643	6732217	0	-	0.397959	(0.378,0.408]	chr17	660307	5	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	TVP23C-CDRT4:TVP23C	ENSG00000259024.6:ENSG00000175106.17	ENST00000522212.6:ENST00000557349.5:ENST00000481756.7:ENST00000518506.4:ENST00000225576.7:ENST00000581273.5:ENST00000518321.6:ENST00000584811.5:ENST00000428082.6:ENST00000438826.7:ENST00000523573.5:ENST00000521179.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	150	2	2.20258	2.8633550000000003	3.52413	0.00323986	8.58502e-6	0.0507788	0.00210871
chrX	155230668	155230767	7740684	0	+	0.444444	(0.44,0.476]	chrX	792592	18	INTRON	INTRON	VBP1	ENSG00000155959.12	ENST00000535916.5:ENST00000625964.2:ENST00000286428.7:ENST00000460509.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	78	2	2.67282	2.863275	3.05373	0.00433875	6.56725e-4	0.0579868	0.0232396
chr1	172590483	172590583	255286	0	+	0.41	(0.408,0.44]	chr1	30454	1	SS3_PROX	SS3_PROX:INTRON	SUCO	ENSG00000094975.14	ENST00000367723.8:ENST00000608151.5:ENST00000616058.4:ENST00000263688.4:ENST00000610051.5	protein_coding	protein_coding	protein_coding	protein_coding	4	38	2	1.49523	2.863095	4.23096	0.0534846	0.0278028	0.180041	0.123904
chr1	246497857	246497957	680629	0	-	0.28	[0,0.28]	chr1	79781	142	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000490107.6:ENST00000462422.5:ENST00000403792.7:ENST00000470863.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	63	2	2.38757	2.863055	3.33854	0.0552962	0.00278022	0.165463	0.0488412
chr2	180995941	180996041	936125	0	+	0.29	(0.28,0.32]	chr2	102627	60	INTRON	INTRON	UBE2E3	ENSG00000170035.16	ENST00000602303.5:ENST00000602959.5:ENST00000602479.5:ENST00000392415.6:ENST00000602291.5:ENST00000410062.9:ENST00000602499.5:ENST00000602710.5:ENST00000602762.5:ENST00000602888.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	75	2	2.00989	2.863025	3.71616	0.0427801	4.76221e-4	0.148082	0.0197443
chr6	160045157	160045244	3023743	0	+	0.310345	(0.28,0.32]	chr6	282082	1	INTRON	INTRON	IGF2R	ENSG00000197081.16	ENST00000676781.1:ENST00000677704.1:ENST00000356956.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	75	2	2.00989	2.863025	3.71616	0.0427801	4.76221e-4	0.148082	0.0197443
chr14	101791969	101792068	5818799	0	+	0.474747	(0.44,0.476]	chr14	551829	22	INTRON	INTRON	PPP2R5C	ENSG00000078304.20	ENST00000694906.1:ENST00000422945.6:ENST00000554442.5:ENST00000556068.5:ENST00000328724.9:ENST00000554504.1:ENST00000553890.1:ENST00000553554.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	97	2	2.00861	2.8629800000000003	3.71735	0.00380912	4.72844e-4	0.0562562	0.0201458
chr6	110883409	110883509	2939030	0	+	0.39	(0.378,0.408]	chr6	276765	74	INTRON	INTRON	AMD1	ENSG00000123505.19	ENST00000451850.6:ENST00000675380.1:ENST00000368882.8:ENST00000672937.2:ENST00000368885.8:ENST00000368877.9:ENST00000368876.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	101	2	2.04984	2.862965	3.67609	0.00321033	6.32264e-4	0.0522684	0.0231174
chr13	49720697	49720791	5592345	0	-	0.351064	(0.35,0.378]	chr13	534572	5	INTRON	INTRON	KPNA3	ENSG00000102753.10	ENST00000261667.8	protein_coding	protein_coding	protein_coding	protein_coding	6	117	2	2.55326	2.8629499999999997	3.17264	8.63206e-4	6.16722e-4	0.0266494	0.0229036
chr16	58169985	58170084	6494906	0	-	0.414141	(0.408,0.44]	chr16	628338	9	INTRON	INTRON	CSNK2A2	ENSG00000070770.10	ENST00000262506.8:ENST00000565188.2:ENST00000566813.5:ENST00000677823.1:ENST00000567730.6:ENST00000563307.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	59	2	2.21857	2.86294	3.50731	0.0209591	8.5918e-4	0.112046	0.0265787
chr16	88659923	88660019	6539292	0	-	0.427083	(0.408,0.44]	chr16	633746	2	INTRON	INTRON	MVD	ENSG00000167508.12	ENST00000301012.8:ENST00000569177.5:ENST00000567064.5:ENST00000568133.5:ENST00000563785.5:ENST00000568709.5:ENST00000563170.5:ENST00000562651.5:ENST00000565610.5:ENST00000563463.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	17	237	2	1.96295	2.86289	3.76283	7.71629e-4	3.89077e-6	0.0255835	0.00142343
chr11	5611437	5611532	4726513	0	+	0.473684	(0.44,0.476]	chr11	437430	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TRIM6	ENSG00000121236.21	ENST00000278302.9:ENST00000507320.5:ENST00000380107.5:ENST00000380097.8:ENST00000445329.5:ENST00000506134.5:ENST00000621176.1:ENST00000481603.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	79	2	2.47339	2.862805	3.25222	0.0090196	2.39476e-4	0.080367	0.0136403
chr17	57438794	57438894	6634582	0	+	0.49	(0.476,0.515]	chr17	648049	63	INTRON	INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000674961.1:ENST00000582453.5:ENST00000675656.1:ENST00000322684.7:ENST00000442934.6:ENST00000579180.2:ENST00000579205.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	46	2	2.47949	2.862725	3.24596	0.0326974	0.00322919	0.145164	0.0507087
chr9	123264138	123264238	4340437	0	-	0.52	(0.515,0.57]	chr9	398963	268	INTRON	INTRON	STRBP	ENSG00000165209.19	ENST00000348403.10:ENST00000360998.3:ENST00000407982.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	17	257	2	2.75088	2.862665	2.97445	2.69584e-5	1.96416e-6	0.00430583	8.51298e-4
chr3	12586631	12586727	1616625	0	-	0.447917	(0.44,0.476]	chr3	166896	4	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	RAF1	ENSG00000132155.14	ENST00000688543.1:ENST00000685348.1:ENST00000251849.9:ENST00000442415.7:ENST00000690585.1:ENST00000691888.1:ENST00000688444.1:ENST00000692093.1:ENST00000685697.1:ENST00000691643.1:ENST00000691724.1:ENST00000423275.6:ENST00000687326.1:ENST00000688803.1:ENST00000460610.2:ENST00000689876.1:ENST00000686455.1:ENST00000684903.1:ENST00000692830.1:ENST00000693312.1:ENST00000690460.1:ENST00000692773.1:ENST00000688625.1:ENST00000692069.1:ENST00000693664.1:ENST00000686762.1:ENST00000692311.1:ENST00000692558.1:ENST00000691779.1:ENST00000685738.1:ENST00000690397.1:ENST00000687923.1:ENST00000688269.1:ENST00000693705.1:ENST00000689097.1:ENST00000691899.1:ENST00000689914.1:ENST00000471449.2:ENST00000690625.1:ENST00000432427.3:ENST00000689389.1:ENST00000687257.1:ENST00000475353.2:ENST00000686409.1:ENST00000685653.1:ENST00000689540.1:ENST00000691396.1:ENST00000687505.1:ENST00000685437.1:ENST00000689418.1:ENST00000688914.1:ENST00000465826.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	94	2	2.53607	2.86256	3.18905	0.00255314	3.33091e-4	0.0449364	0.0162254
chr22	19092984	19093083	7551720	0	-	0.393939	(0.378,0.408]	chr22	771903	31	INTRON	INTRON	DGCR2	ENSG00000070413.20	ENST00000537045.5:ENST00000545799.5:ENST00000263196.12:ENST00000389262.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	31	2	1.76032	2.862515	3.96471	0.0721577	0.032421	0.187433	0.145026
chr5	177045828	177045927	2553167	0	+	0.393939	(0.378,0.408]	chr5	243788	9	INTRON	INTRON	ZNF346	ENSG00000113761.12	ENST00000512315.5:ENST00000358149.8:ENST00000506693.5:ENST00000503425.5:ENST00000508155.5:ENST00000511834.5:ENST00000503039.1:ENST00000513587.5:ENST00000504600.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	31	2	1.76032	2.862515	3.96471	0.0721577	0.032421	0.187433	0.145026
chr6	72737412	72737512	2898858	0	+	0.39	(0.378,0.408]	chr6	274190	590	INTRON	INTRON	KCNQ5	ENSG00000185760.18	ENST00000342056.6:ENST00000628967.2:ENST00000692515.1:ENST00000370398.6:ENST00000370392.5:ENST00000629977.2:ENST00000355194.9	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	31	2	1.76032	2.862515	3.96471	0.0721577	0.032421	0.187433	0.145026
chr4	150987622	150987722	2271495	0	-	0.53	(0.515,0.57]	chr4	220921	582	INTRON	INTRON	LRBA	ENSG00000198589.14	ENST00000357115.9:ENST00000651943.2:ENST00000510413.5:ENST00000651035.1:ENST00000507224.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	84	2	1.65501	2.8623849999999997	4.06976	0.016231	5.5596e-5	0.109464	0.00651834
chr16	89530314	89530406	6420572	0	+	0.51087	(0.476,0.515]	chr16	616241	9	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	SPG7	ENSG00000197912.16	ENST00000647079.1:ENST00000646303.1:ENST00000643649.1:ENST00000643307.1:ENST00000566371.6:ENST00000644498.1:ENST00000645897.1:ENST00000643668.1:ENST00000644225.1:ENST00000645818.2:ENST00000645977.1:ENST00000645063.1:ENST00000646263.1:ENST00000643724.1:ENST00000644781.1:ENST00000644901.1:ENST00000645042.1:ENST00000646531.1:ENST00000646930.1:ENST00000642436.1:ENST00000644210.1:ENST00000564047.2:ENST00000646589.1:ENST00000268704.7:ENST00000646826.1:ENST00000646716.1:ENST00000643345.1:ENST00000341316.6:ENST00000645533.1:ENST00000646958.1:ENST00000642371.1:ENST00000643105.1:ENST00000645354.1:ENST00000642334.1:ENST00000647227.1:ENST00000646445.1:ENST00000564409.2:ENST00000643954.1:ENST00000646399.1:ENST00000644671.1:ENST00000643178.1:ENST00000644748.1:ENST00000643496.1:ENST00000647032.1:ENST00000644751.1:ENST00000642427.1:ENST00000643370.1:ENST00000645886.1:ENST00000646454.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	125	2	2.58108	2.862355	3.14363	4.74145e-4	4.25082e-4	0.0201638	0.018441
chr11	78403959	78404059	5000249	0	-	0.44	(0.408,0.44]	chr11	472472	395	INTRON	INTRON	GAB2	ENSG00000033327.13	ENST00000361507.5:ENST00000526030.1:ENST00000528886.5:ENST00000530915.1:ENST00000534823.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	30	2	1.74775	2.8622699999999996	3.97679	0.0735403	0.0299485	0.190238	0.142135
chr14	102606520	102606620	5822672	0	+	0.44	(0.408,0.44]	chr14	552490	128	INTRON	INTRON	RCOR1	ENSG00000089902.10	ENST00000262241.7	protein_coding	protein_coding	protein_coding	protein_coding	2	30	2	1.74775	2.8622699999999996	3.97679	0.0735403	0.0299485	0.190238	0.142135
chr7	139405987	139406087	3438060	0	+	0.44	(0.408,0.44]	chr7	320358	2	SS5_PROX	SS5_PROX:INTRON	LUC7L2:FMC1-LUC7L2	ENSG00000146963.18:ENSG00000269955.2	ENST00000541170.7:ENST00000541515.3:ENST00000619796.4:ENST00000354926.9:ENST00000456182.5:ENST00000263545.7:ENST00000463912.5:ENST00000498518.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	45	2	2.36073	2.862255	3.36378	0.0481658	0.0016048	0.153019	0.0367961
chr12	53007396	53007496	5141422	0	+	0.29	(0.28,0.32]	chr12	484964	5	INTRON	INTRON	EIF4B	ENSG00000063046.18	ENST00000551527.5:ENST00000549077.5:ENST00000549645.5:ENST00000262056.14:ENST00000420463.7:ENST00000551002.5:ENST00000416762.7:ENST00000550704.5:ENST00000549481.5:ENST00000552490.5:ENST00000550390.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	188	2	2.38601	2.86224	3.33847	0.00129677	1.0753e-4	0.0333764	0.00929593
chr1	235231882	235231978	662892	0	-	0.427083	(0.408,0.44]	chr1	78510	3	INTRON	INTRON	ARID4B	ENSG00000054267.22	ENST00000349213.7:ENST00000366603.6:ENST00000264183.9:ENST00000421364.5:ENST00000491632.5:ENST00000471257.5:ENST00000418304.1:ENST00000466653.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	99	2	2.16319	2.86188	3.56057	0.00180756	9.67143e-4	0.0393572	0.0282401
chr1	70164313	70164412	479476	0	-	0.474747	(0.44,0.476]	chr1	57643	45	INTRON	INTRON	LRRC40	ENSG00000066557.6	ENST00000370952.4	protein_coding	protein_coding	protein_coding	protein_coding	4	78	2	2.78046	2.861835	2.94321	0.0028389	0.00111162	0.0473151	0.0305384
chr10	5898360	5898459	4385262	0	+	0.444444	(0.44,0.476]	chr10	404631	28	INTRON	INTRON	FBH1	ENSG00000134452.20	ENST00000397269.7:ENST00000362091.9:ENST00000470089.5:ENST00000462507.1:ENST00000379999.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	119	2	2.30982	2.861825	3.41383	0.00140739	1.54313e-4	0.0344267	0.0113252
chr15	50586988	50587083	6172255	0	-	0.336842	(0.32,0.35]	chr15	588246	1	INTRON	INTRON	TRPM7	ENSG00000092439.16	ENST00000646667.1:ENST00000560955.5:ENST00000645282.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	112	2	2.1298	2.86176	3.59372	0.0141189	4.81573e-5	0.0959618	0.00566695
chr21	33267502	33267600	7395828	0	+	0.459184	(0.44,0.476]	chr21	753321	6	INTRON	INTRON	IL10RB	ENSG00000243646.11	ENST00000290200.7:ENST00000422891.5:ENST00000637650.2:ENST00000609556.3:ENST00000696764.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	36	2	1.49942	2.861675	4.22393	0.0792118	0.0162322	0.199574	0.109464
chr8	127739895	127739995	3860006	0	+	0.39	(0.378,0.408]	chr8	355367	1	SS3_PROX	SS3_PROX:INTRON	MYC	ENSG00000136997.21	ENST00000259523.10:ENST00000651626.1:ENST00000377970.6:ENST00000524013.2:ENST00000621592.8:ENST00000652288.1	protein_coding	protein_coding	protein_coding	protein_coding	6	115	2	1.88716	2.8616	3.83604	0.017192	8.26408e-6	0.104099	0.00207261
chr14	102598123	102598223	5822588	0	+	0.51	(0.476,0.515]	chr14	552490	44	INTRON	INTRON	RCOR1	ENSG00000089902.10	ENST00000262241.7	protein_coding	protein_coding	protein_coding	protein_coding	6	107	2	2.36512	2.8615950000000003	3.35807	0.00246559	1.37324e-4	0.0446195	0.0100829
chr3	141878261	141878361	1526091	0	+	0.35	(0.32,0.35]	chr3	159005	3	INTRON	INTRON	ATP1B3	ENSG00000069849.11	ENST00000475483.5:ENST00000465172.5:ENST00000286371.8:ENST00000466678.5:ENST00000462082.1:ENST00000495216.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	81	2	2.33698	2.8615500000000003	3.38612	0.00536261	0.00249604	0.0663076	0.0446195
chr11	68479691	68479791	4817522	0	+	0.41	(0.408,0.44]	chr11	448907	185	INTRON	INTRON	PPP6R3	ENSG00000110075.15	ENST00000530427.5:ENST00000528635.5:ENST00000529907.5:ENST00000533127.5:ENST00000534534.5:ENST00000529344.5:ENST00000524845.5:ENST00000393800.7:ENST00000265637.8:ENST00000524904.5:ENST00000393801.7:ENST00000265636.9:ENST00000529710.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	59	2	2.82511	2.86153	2.89795	0.0110735	0.00189528	0.0873897	0.0402736
chr11	60062905	60063005	4795731	0	+	0.44	(0.408,0.44]	chr11	444045	3	SS5_PROX	SS5_PROX:INTRON	MS4A3	ENSG00000149516.14	ENST00000395032.6:ENST00000358152.6:ENST00000278865.8:ENST00000525686.1:ENST00000534744.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	45	2	2.66579	2.86142	3.05705	0.019342	0.00658331	0.119831	0.0701901
chr7	121048691	121048791	3394239	0	+	0.49	(0.476,0.515]	chr7	317688	13	INTRON	INTRON	CPED1	ENSG00000106034.18	ENST00000340646.9:ENST00000310396.10:ENST00000428526.5:ENST00000495036.5:ENST00000450913.6:ENST00000520801.5:ENST00000521774.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	13	199	2	2.30511	2.8613299999999997	3.41755	2.19904e-4	2.80798e-5	0.0130104	0.00435887
chr8	125000371	125000471	3853243	0	+	0.32	(0.28,0.32]	chr8	355135	3	SS5_PROX	SS5_PROX:INTRON	SQLE	ENSG00000104549.12	ENST00000523430.5:ENST00000265896.10:ENST00000521232.1	protein_coding	protein_coding	protein_coding	protein_coding	3	75	2	2.78004	2.86124	2.94244	0.0193244	0.00144407	0.108861	0.0348397
chr12	6498023	6498123	5069259	0	+	0.52	(0.515,0.57]	chr12	478656	24	INTRON	INTRON	NCAPD2	ENSG00000010292.13	ENST00000541399.1:ENST00000539714.5:ENST00000382457.8:ENST00000539084.5:ENST00000315579.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	93	2	2.05789	2.861115	3.66434	0.00786509	1.71942e-5	0.076155	0.00315585
chr15	58995403	58995503	6038959	0	+	0.42	(0.408,0.44]	chr15	574972	66	INTRON	INTRON	RNF111	ENSG00000157450.16	ENST00000559757.1:ENST00000348370.9:ENST00000559160.1:ENST00000559209.5:ENST00000557998.5	protein_coding	protein_coding	protein_coding	protein_coding	4	82	2	2.60048	2.861095	3.12171	0.00484324	6.63666e-4	0.0640618	0.0234815
chr1	32760554	32760654	66390	0	+	0.46	(0.44,0.476]	chr1	8486	60	INTRON	INTRON	KIAA1522	ENSG00000162522.11	ENST00000401073.7:ENST00000468130.1:ENST00000373481.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	60	2	1.96602	2.86105	3.75608	0.0426807	2.6487e-4	0.148082	0.0144071
chr1	65346322	65346422	136459	0	+	0.38	(0.378,0.408]	chr1	15358	2	INTRON	INTRON	DNAJC6	ENSG00000116675.16	ENST00000463018.5:ENST00000494710.6:ENST00000263441.11:ENST00000395325.7:ENST00000483402.1:ENST00000371069.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	45	2	2.66785	2.86089	3.05393	0.0224639	0.00551532	0.11692	0.0672816
chr16	89345614	89345713	6542133	0	-	0.393939	(0.378,0.408]	chr16	634215	19	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000647238.1:ENST00000644045.1:ENST00000643147.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	45	2	2.66785	2.86089	3.05393	0.0224639	0.00551532	0.11692	0.0672816
chr5	83114301	83114401	2407233	0	+	0.39	(0.378,0.408]	chr5	232277	27	INTRON	INTRON	XRCC4	ENSG00000152422.16	ENST00000282268.7:ENST00000338635.10:ENST00000396027.9:ENST00000542685.5:ENST00000511817.1:ENST00000509268.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	45	2	2.66785	2.86089	3.05393	0.0224639	0.00551532	0.11692	0.0672816
chr17	39274769	39274869	6765376	0	-	0.38	(0.378,0.408]	chr17	665444	4	SS5_PROX	SS5_PROX:INTRON	FBXL20	ENSG00000108306.13	ENST00000264658.11:ENST00000583610.5:ENST00000394294.7:ENST00000577399.5	protein_coding	protein_coding	protein_coding	protein_coding	3	63	2	1.88729	2.86088	3.83447	0.0532327	1.86403e-4	0.162538	0.0119078
chr15	82812209	82812307	6076946	0	+	0.44898	(0.44,0.476]	chr15	578849	15	INTRON	INTRON	WHAMM	ENSG00000156232.7	ENST00000286760.5	protein_coding	protein_coding	protein_coding	protein_coding	3	60	2	2.74063	2.8608149999999997	2.981	0.0176095	9.31193e-4	0.105143	0.0278746
chr20	49673793	49673893	7353227	0	-	0.39	(0.378,0.408]	chr20	749846	167	INTRON	INTRON	B4GALT5	ENSG00000158470.5	ENST00000371711.4	protein_coding	protein_coding	protein_coding	protein_coding	2	45	2	2.72993	2.8608149999999997	2.9917	0.0188736	0.0068789	0.108861	0.0749442
chr6	163424582	163424680	3031802	0	+	0.316327	(0.28,0.32]	chr6	282559	6	INTRON	INTRON	QKI	ENSG00000112531.17	ENST00000361758.8:ENST00000453779.6:ENST00000275262.11:ENST00000392127.6:ENST00000361752.8:ENST00000361195.6:ENST00000424802.7:ENST00000545607.5:ENST00000544436.5:ENST00000537041.5:ENST00000537124.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	101	2	2.25951	2.860805	3.4621	0.00397414	0.00218379	0.0577209	0.0417893
chr16	8807474	8807563	6284755	0	+	0.438202	(0.408,0.44]	chr16	601832	6	INTRON	INTRON	PMM2	ENSG00000140650.13	ENST00000566983.5:ENST00000682008.1:ENST00000683435.1:ENST00000683094.1:ENST00000566604.5:ENST00000570134.5:ENST00000268261.9:ENST00000683274.1:ENST00000682393.1:ENST00000566540.5:ENST00000562318.5:ENST00000565896.5:ENST00000568602.5:ENST00000570076.5:ENST00000569958.5:ENST00000565221.5:ENST00000564069.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	89	2	1.99397	2.8607899999999997	3.72761	0.00610802	4.662e-4	0.0706941	0.0199613
chrX	123622657	123622757	7877916	0	-	0.36	(0.35,0.378]	chrX	802435	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	THOC2	ENSG00000125676.20	ENST00000245838.13:ENST00000441692.5:ENST00000618150.4:ENST00000355725.8:ENST00000491737.5:ENST00000464982.1:ENST00000438358.1:ENST00000459945.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	124	2	2.63153	2.860745	3.08996	0.00562761	4.34591e-5	0.0653997	0.00532088
chr14	103451027	103451124	5826294	0	+	0.525773	(0.515,0.57]	chr14	552846	17	INTRON	INTRON	MARK3	ENSG00000075413.19	ENST00000678179.1:ENST00000676838.1:ENST00000677348.1:ENST00000677404.1:ENST00000676694.1:ENST00000676938.1:ENST00000678619.1:ENST00000676897.1:ENST00000677214.1:ENST00000677942.1:ENST00000676830.1:ENST00000678999.1:ENST00000677228.1:ENST00000556744.2:ENST00000677104.1:ENST00000679330.1:ENST00000560417.6:ENST00000440884.7:ENST00000676475.1:ENST00000677035.1:ENST00000678022.1:ENST00000677560.1:ENST00000561314.6:ENST00000429436.7:ENST00000677118.1:ENST00000676564.1:ENST00000678169.1:ENST00000678175.1:ENST00000678897.1:ENST00000678278.1:ENST00000676645.1:ENST00000677829.1:ENST00000678302.1:ENST00000677133.1:ENST00000561164.2:ENST00000558223.6:ENST00000559328.6:ENST00000678207.1:ENST00000677360.1:ENST00000676905.1:ENST00000678343.1:ENST00000677347.1:ENST00000678071.1:ENST00000677432.1:ENST00000678237.1:ENST00000677604.1:ENST00000676518.1:ENST00000677051.1:ENST00000677857.1:ENST00000677869.1:ENST00000678423.1:ENST00000560603.6:ENST00000416682.6:ENST00000303622.13:ENST00000216288.11:ENST00000679105.1:ENST00000553942.5:ENST00000335102.9:ENST00000561225.1:ENST00000678091.1:ENST00000561071.5:ENST00000558698.5:ENST00000559268.5:ENST00000560731.5:ENST00000676745.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	60	2	2.36534	2.860715	3.35609	0.00404547	0.00174131	0.0578376	0.0375363
chr3	87826822	87826922	1455353	0	+	0.56	(0.515,0.57]	chr3	153149	43	INTRON	INTRON	HTR1F	ENSG00000179097.7	ENST00000319595.7	protein_coding	protein_coding	protein_coding	protein_coding	4	60	2	2.36534	2.860715	3.35609	0.00404547	0.00174131	0.0578376	0.0375363
chr6	75673272	75673370	2905674	0	+	0.326531	(0.32,0.35]	chr6	274554	22	INTRON	INTRON	SENP6	ENSG00000112701.18	ENST00000370010.6:ENST00000447266.7:ENST00000327284.12:ENST00000424947.6:ENST00000503501.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	81	2	2.3011	2.86068	3.42026	0.00617969	0.00219805	0.0713552	0.0417893
chr11	66646384	66646469	4811111	0	+	0.376471	(0.35,0.378]	chr11	447907	5	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	RBM14-RBM4:RBM4	ENSG00000248643.5:ENSG00000173933.21	ENST00000412278.2:ENST00000500635.2:ENST00000396053.9:ENST00000408993.6:ENST00000578778.5:ENST00000398692.8:ENST00000310092.12:ENST00000528039.5:ENST00000506523.6:ENST00000530235.1:ENST00000409406.1:ENST00000515838.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	76	2	2.24196	2.860645	3.47933	0.00744693	0.0015613	0.0772645	0.0360352
chr16	66828442	66828542	6503024	0	-	0.47	(0.44,0.476]	chr16	629264	3	SS3_PROX	SS3_PROX:INTRON	NAE1	ENSG00000159593.15	ENST00000359087.8:ENST00000290810.8:ENST00000379463.6:ENST00000394074.6:ENST00000567743.5:ENST00000563253.5:ENST00000563185.6:ENST00000561579.6:ENST00000564040.6:ENST00000569388.5:ENST00000566336.5:ENST00000565535.5:ENST00000569348.5:ENST00000562757.5:ENST00000563419.5:ENST00000569963.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	82	2	2.54944	2.86058	3.17172	0.00591346	5.10693e-4	0.0694038	0.020816
chr17	82817728	82817827	6694871	0	+	0.323232	(0.32,0.35]	chr17	654903	24	INTRON	INTRON	TBCD	ENSG00000141556.22	ENST00000682479.1:ENST00000682722.1:ENST00000684464.1:ENST00000684544.1:ENST00000681983.1:ENST00000684361.1:ENST00000683184.1:ENST00000683282.1:ENST00000684408.1:ENST00000355528.9:ENST00000683444.1:ENST00000684776.1:ENST00000683041.1:ENST00000684760.1:ENST00000684349.1:ENST00000682213.1:ENST00000683009.1:ENST00000682921.1:ENST00000539345.6:ENST00000684000.1:ENST00000684188.1:ENST00000684429.1:ENST00000682610.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	91	2	2.69421	2.860535	3.02686	0.00484681	8.86699e-4	0.0605691	0.0271952
chr2	87814879	87814977	1173089	0	-	0.316327	(0.28,0.32]	chr2	125254	23	INTRON	INTRON	RGPD2	ENSG00000185304.16	ENST00000398146.5	protein_coding	protein_coding	protein_coding	protein_coding	2	55	2	2.45545	2.86048	3.26551	0.0438092	0.0030714	0.14901	0.0509893
chr1	19137208	19137307	386022	0	-	0.535354	(0.515,0.57]	chr1	45834	78	INTRON	INTRON	UBR4	ENSG00000127481.15	ENST00000375254.8:ENST00000425413.5:ENST00000417040.1	protein_coding	protein_coding	protein_coding	protein_coding	5	81	2	2.67294	2.86046	3.04798	0.00112534	5.9198e-4	0.0306963	0.0221485
chr4	68319362	68319448	2154567	0	-	0.290698	(0.28,0.32]	chr4	212227	1	INTRON	INTRON	YTHDC1	ENSG00000083896.13	ENST00000344157.9:ENST00000355665.7:ENST00000579690.5	protein_coding	protein_coding	protein_coding	protein_coding	2	56	2	2.32871	2.8603750000000003	3.39204	0.0581621	0.00188405	0.167723	0.0402736
chr6	116650380	116650478	3197770	0	-	0.377551	(0.35,0.378]	chr6	297846	24	INTRON	INTRON	ZUP1	ENSG00000153975.10	ENST00000368576.8	protein_coding	protein_coding	protein_coding	protein_coding	5	88	2	1.84611	2.860355	3.8746	0.0204148	1.66811e-4	0.110862	0.0111796
chr1	24655429	24655529	45872	0	+	0.28	[0,0.28]	chr1	5715	3	SS5_PROX	SS5_PROX:INTRON	SRRM1	ENSG00000133226.18	ENST00000374389.8:ENST00000323848.14:ENST00000479034.5:ENST00000596378.1:ENST00000496882.5:ENST00000461768.5:ENST00000485541.1:ENST00000488317.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	115	2	2.14475	2.8603050000000003	3.57586	0.00723874	0.00187793	0.0756327	0.039073
chr7	43711449	43711549	3526198	0	-	0.34	(0.32,0.35]	chr7	328783	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	COA1	ENSG00000106603.20	ENST00000415076.6:ENST00000446330.6:ENST00000446564.5:ENST00000438444.5:ENST00000223336.11:ENST00000310564.10:ENST00000415798.5:ENST00000431651.5:ENST00000451651.5:ENST00000418140.5:ENST00000448704.5:ENST00000470156.1:ENST00000457939.1:ENST00000420441.1:ENST00000478504.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	82	2	1.99785	2.860305	3.72276	0.0215554	3.96144e-4	0.114686	0.0178616
chr1	223808142	223808241	642993	0	-	0.30303	(0.28,0.32]	chr1	75932	8	INTRON	INTRON	TP53BP2	ENSG00000143514.17	ENST00000343537.12:ENST00000391878.6:ENST00000494100.1:ENST00000496282.5:ENST00000473135.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	74	2	2.84671	2.860265	2.87382	0.014868	0.00216662	0.0989021	0.0434015
chr17	75900207	75900307	6839055	0	-	0.64	(0.57,1]	chr17	676125	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	MRPL38	ENSG00000204316.13	ENST00000309352.4:ENST00000480203.5:ENST00000588620.5:ENST00000477371.5:ENST00000477023.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	32	2	2.23711	2.86024	3.48337	0.0172108	6.20854e-4	0.104099	0.0223951
chr7	1456784	1456884	3462253	0	-	0.64	(0.57,1]	chr7	323713	61	INTRON	INTRON	MICALL2	ENSG00000164877.19	ENST00000472100.5:ENST00000297508.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	32	2	2.23711	2.86024	3.48337	0.0172108	6.20854e-4	0.104099	0.0223951
chr9	130629639	130629736	4213605	0	+	0.57732000000000006	(0.57,1]	chr9	386338	28	INTRON	INTRON	FUBP3	ENSG00000107164.16	ENST00000319725.10:ENST00000650723.1:ENST00000487406.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	32	2	2.23711	2.86024	3.48337	0.0172108	6.20854e-4	0.104099	0.0223951
chr14	101799180	101799279	5818873	0	+	0.585859	(0.57,1]	chr14	551834	16	INTRON	INTRON	PPP2R5C	ENSG00000078304.20	ENST00000694906.1:ENST00000422945.6:ENST00000554442.5:ENST00000556068.5:ENST00000328724.9:ENST00000554504.1:ENST00000553890.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	50	2	2.80351	2.8600849999999998	2.91666	0.00172505	2.13552e-4	0.0374701	0.0128246
chr15	90878576	90878663	6102046	0	+	0.448276	(0.44,0.476]	chr15	581038	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	FURIN	ENSG00000140564.13	ENST00000268171.8:ENST00000610579.4:ENST00000680053.1:ENST00000618099.4:ENST00000680687.1:ENST00000681804.1:ENST00000681865.1:ENST00000558794.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	58	2	2.49823	2.860075	3.22192	0.00718224	0.00360821	0.0756118	0.0533855
chr4	110094232	110094331	2226689	0	-	0.464646	(0.44,0.476]	chr4	218018	7	INTRON	INTRON	ELOVL6	ENSG00000170522.10	ENST00000394607.7:ENST00000302274.8:ENST00000514184.5:ENST00000506625.5:ENST00000506461.1:ENST00000503885.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	58	2	2.49823	2.860075	3.22192	0.00718224	0.00360821	0.0756118	0.0533855
chr1	65376717	65376817	136769	0	+	0.3	(0.28,0.32]	chr1	15376	102	INTRON	INTRON	DNAJC6	ENSG00000116675.16	ENST00000494710.6:ENST00000263441.11:ENST00000395325.7:ENST00000371069.5:ENST00000472787.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	55	2	2.80157	2.8600399999999997	2.91851	0.0147132	0.0130672	0.106558	0.093385
chr7	2355920	2356019	3269631	0	+	0.363636	(0.35,0.378]	chr7	303797	1	INTRON	INTRON	EIF3B	ENSG00000106263.19	ENST00000431643.5:ENST00000360876.9:ENST00000413917.5:ENST00000397011.2	protein_coding	protein_coding	protein_coding	protein_coding	3	67	2	2.10859	2.85996	3.61133	0.0272722	9.14099e-4	0.136494	0.0278396
chr2	99478148	99478248	1189763	0	-	0.43	(0.408,0.44]	chr2	127721	128	INTRON	INTRON	REV1	ENSG00000135945.10	ENST00000393445.7:ENST00000258428.8:ENST00000413697.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	95	2	2.2644	2.8599050000000004	3.45541	0.00768371	7.81911e-5	0.0753803	0.00736696
chr1	113942058	113942158	191924	0	+	0.48	(0.476,0.515]	chr1	21149	2	INTRON	INTRON	HIPK1	ENSG00000163349.22	ENST00000426820.7:ENST00000626993.2:ENST00000369559.8:ENST00000369558.5:ENST00000369561.8:ENST00000369555.6	protein_coding	protein_coding	protein_coding	protein_coding	7	121	2	2.07252	2.859865	3.64721	0.00436163	4.2033e-5	0.060356	0.00550232
chr22	49537773	49537873	7601457	0	-	0.35	(0.32,0.35]	chr22	778566	962	INTRON	INTRON	MIR3667HG	ENSG00000188511.13	ENST00000414287.5:ENST00000416411.1	lncRNA	lncRNA	lncRNA	lncRNA	4	91	2	2.72473	2.85984	2.99495	0.00433316	0.00102621	0.0579683	0.0294094
chr16	24050931	24051031	6325915	0	+	0.44	(0.408,0.44]	chr16	605723	150	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000498739.1:ENST00000647422.1:ENST00000486868.1:ENST00000482000.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	59	2	2.16746	2.859805	3.55215	0.024436	7.01039e-4	0.12011	0.0241881
chr17	31154682	31154782	6591731	0	+	0.37	(0.35,0.378]	chr17	641057	258	INTRON	INTRON	NF1	ENSG00000196712.20	ENST00000696138.1:ENST00000356175.7:ENST00000487476.5:ENST00000691014.1:ENST00000358273.9:ENST00000431387.8:ENST00000579081.5:ENST00000489712.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	63	2	2.59046	2.859755	3.12905	0.00566312	0.00528327	0.0656295	0.0653997
chr2	70050917	70051014	1150884	0	-	0.28866000000000003	(0.28,0.32]	chr2	122865	24	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	PCBP1-AS1	ENSG00000179818.16	ENST00000419542.5:ENST00000682294.1:ENST00000684630.1:ENST00000630975.3:ENST00000435880.6:ENST00000629339.3:ENST00000667874.1:ENST00000628659.2:ENST00000628308.2:ENST00000626515.2:ENST00000625447.2:ENST00000628305.2:ENST00000625625.2:ENST00000625864.2:ENST00000630522.2:ENST00000628837.2:ENST00000627325.2:ENST00000629084.2:ENST00000629603.2:ENST00000625215.2:ENST00000627189.2:ENST00000629836.2:ENST00000626898.2:ENST00000628883.2:ENST00000629533.2:ENST00000627181.2:ENST00000630214.2:ENST00000627918.2:ENST00000628374.2:ENST00000627327.2:ENST00000626495.2:ENST00000629605.2:ENST00000626370.2:ENST00000626842.2:ENST00000630457.2:ENST00000629184.2:ENST00000628551.2:ENST00000630746.2:ENST00000627398.2:ENST00000457076.5:ENST00000625783.2:ENST00000625490.2:ENST00000627050.2:ENST00000630759.2:ENST00000628667.2:ENST00000626632.2:ENST00000631110.2:ENST00000626609.2:ENST00000629506.2:ENST00000630985.2:ENST00000413436.5:ENST00000628147.2:ENST00000631107.2:ENST00000629415.2:ENST00000418564.5:ENST00000630280.2:ENST00000415222.5:ENST00000628322.2:ENST00000626440.2:ENST00000665708.1:ENST00000655086.1:ENST00000420309.6:ENST00000627487.3:ENST00000670036.1:ENST00000655096.1:ENST00000685127.1:ENST00000684907.1:ENST00000685079.1:ENST00000687866.1:ENST00000692564.1:ENST00000686517.1:ENST00000689138.1:ENST00000688056.1:ENST00000594376.6:ENST00000692333.1:ENST00000688045.1:ENST00000657291.1:ENST00000691987.1:ENST00000664483.1:ENST00000601431.6:ENST00000685803.1:ENST00000690200.1:ENST00000686800.1:ENST00000684857.1:ENST00000627037.2:ENST00000629212.2:ENST00000688473.1:ENST00000456161.5:ENST00000627074.2:ENST00000419963.5:ENST00000625227.2:ENST00000599673.5:ENST00000629407.2:ENST00000418308.5:ENST00000630283.2:ENST00000629178.2:ENST00000627542.2:ENST00000626574.2:ENST00000596028.5:ENST00000629485.2:ENST00000630685.2:ENST00000452431.5:ENST00000629374.2:ENST00000423402.5:ENST00000411429.5:ENST00000629188.2:ENST00000434781.5:ENST00000626162.2:ENST00000654878.1:ENST00000659586.1:ENST00000457770.6:ENST00000415742.5:ENST00000627540.2:ENST00000628263.2:ENST00000657575.2:ENST00000689275.1:ENST00000687961.1:ENST00000416395.6:ENST00000692733.1:ENST00000654336.1:ENST00000686055.1:ENST00000626509.3:ENST00000425601.6:ENST00000653064.1:ENST00000656326.1:ENST00000668711.1:ENST00000665172.1:ENST00000630520.3:ENST00000663209.1:ENST00000659305.1:ENST00000654601.1:ENST00000663375.1:ENST00000654958.1:ENST00000665838.1:ENST00000653606.1:ENST00000659941.1:ENST00000669583.1:ENST00000660903.1:ENST00000653596.1:ENST00000656308.1:ENST00000449178.6:ENST00000625955.3:ENST00000655140.1:ENST00000661989.1:ENST00000664419.1:ENST00000670785.1:ENST00000664773.1:ENST00000661703.1:ENST00000658454.1:ENST00000664049.1:ENST00000655058.1:ENST00000366234.7:ENST00000599427.5:ENST00000597318.5:ENST00000625518.2:ENST00000425333.5:ENST00000429599.6:ENST00000432604.5:ENST00000421843.5:ENST00000458686.5:ENST00000421255.5:ENST00000413069.5:ENST00000685037.1:ENST00000458698.6:ENST00000670786.1:ENST00000657164.1:ENST00000665264.1:ENST00000603347.5:ENST00000604346.5:ENST00000413791.5:ENST00000690464.1:ENST00000690924.1:ENST00000688311.1:ENST00000691287.1:ENST00000416506.5:ENST00000655481.1:ENST00000655420.1:ENST00000612202.5:ENST00000666167.1:ENST00000664958.1:ENST00000416068.6:ENST00000653289.1:ENST00000653811.1:ENST00000661863.1:ENST00000659531.1:ENST00000667307.1:ENST00000437019.2:ENST00000666074.1:ENST00000654716.1:ENST00000439670.6:ENST00000669812.1:ENST00000660404.2:ENST00000656852.1:ENST00000670845.1:ENST00000669570.1:ENST00000422515.6:ENST00000653114.1:ENST00000667952.1:ENST00000662224.1:ENST00000664533.1:ENST00000670313.1:ENST00000626558.3:ENST00000670974.1:ENST00000664014.1:ENST00000668191.1:ENST00000609543.6:ENST00000664754.1:ENST00000662103.1:ENST00000669896.1:ENST00000629943.3:ENST00000625788.3:ENST00000663033.1:ENST00000442040.5:ENST00000627155.2:ENST00000601396.5:ENST00000629825.2:ENST00000444410.5:ENST00000614826.4:ENST00000444320.5:ENST00000630377.2:ENST00000601494.1:ENST00000602091.1:ENST00000662425.1:ENST00000688278.1	lncRNA	lncRNA	lncRNA	lncRNA	2	56	2	2.67453	2.8596899999999996	3.04485	0.021289	0.00894006	0.123318	0.0799922
chr4	25366308	25366404	1933911	0	+	0.458333	(0.44,0.476]	chr4	194170	3	INTRON	INTRON	ZCCHC4	ENSG00000168228.16	ENST00000302874.9:ENST00000505412.1	protein_coding	protein_coding	protein_coding	protein_coding	4	78	2	2.59632	2.8596500000000002	3.12298	0.00579248	4.66209e-4	0.0662959	0.0195589
chr17	59630929	59631029	6641673	0	+	0.42	(0.408,0.44]	chr17	648527	104	INTRON	INTRON	CLTC	ENSG00000141367.12	ENST00000621829.4:ENST00000393043.5:ENST00000269122.8:ENST00000580081.1:ENST00000579456.5:ENST00000584313.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	44	2	2.51492	2.859645	3.20437	0.0329839	0.00306596	0.133816	0.0509893
chr3	17731444	17731544	1630322	0	-	0.47	(0.44,0.476]	chr3	168275	292	INTRON	INTRON	TBC1D5	ENSG00000131374.15	ENST00000253692.11:ENST00000696125.1:ENST00000414318.2:ENST00000429383.8:ENST00000415814.6:ENST00000452492.6:ENST00000412981.5:ENST00000428355.5:ENST00000425944.5:ENST00000430169.5:ENST00000445294.5:ENST00000414349.5:ENST00000443499.6:ENST00000444756.5:ENST00000497531.5:ENST00000443386.5:ENST00000446863.5:ENST00000444471.5:ENST00000481396.5:ENST00000423331.6:ENST00000485432.1:ENST00000471679.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	163	2	2.84488	2.859585	2.87429	2.11295e-4	7.01337e-5	0.0132201	0.00693374
chr1	12340190	12340289	29371	0	+	0.383838	(0.378,0.408]	chr1	3596	15	INTRON	INTRON	VPS13D	ENSG00000048707.15	ENST00000620676.6:ENST00000613099.4:ENST00000011700.10:ENST00000646917.1:ENST00000460333.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	73	2	2.57022	2.8595699999999997	3.14892	0.00499984	0.00179058	0.0617433	0.0392749
chr2	55571435	55571534	1124649	0	-	0.232323	[0,0.28]	chr2	120617	27	INTRON	INTRON	PPP4R3B	ENSG00000275052.5	ENST00000616407.2:ENST00000611717.4:ENST00000616288.4:ENST00000482826.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	84	2	2.8193	2.85956	2.89982	0.0158893	0.00285248	0.101453	0.0494641
chr1	145996266	145996344	541120	0	-	0.397436	(0.378,0.408]	chr1	63491	1	UTR5	UTR5:EXON_MRNA	TXNIP	ENSG00000265972.6	ENST00000582401.6	protein_coding	protein_coding	protein_coding	protein_coding	75	1260	2	2.81236	2.859535	2.90671	2.91134e-6	1.55095e-7	0.00120122	1.80918e-4
chr7	4723346	4723446	3270326	0	+	0.4	(0.378,0.408]	chr7	303884	401	INTRON	INTRON	FOXK1	ENSG00000164916.11	ENST00000328914.5	protein_coding	protein_coding	protein_coding	protein_coding	2	46	2	2.38873	2.859495	3.33026	0.0458857	0.00189824	0.149888	0.0402736
chr18	36156559	36156654	6891703	0	+	0.368421	(0.35,0.378]	chr18	683032	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	ELP2	ENSG00000134759.14	ENST00000351393.10:ENST00000442325.6:ENST00000358232.11:ENST00000423854.6:ENST00000539560.5:ENST00000350494.10:ENST00000542824.5:ENST00000540799.1:ENST00000542050.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	12	225	2	2.70549	2.85945	3.01341	1.32148e-4	3.97114e-5	0.0104667	0.00511025
chr9	123239364	123239463	4340189	0	-	0.383838	(0.378,0.408]	chr9	398963	20	INTRON	INTRON	STRBP	ENSG00000165209.19	ENST00000348403.10:ENST00000360998.3:ENST00000407982.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	81	2	2.63057	2.85933	3.08809	0.0053733	5.71831e-4	0.0642754	0.0217398
chr2	113755974	113756073	1216824	0	-	0.424242	(0.408,0.44]	chr2	129548	2	UTR5	UTR5:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SLC35F5	ENSG00000115084.15	ENST00000245680.7:ENST00000409106.5:ENST00000409342.1:ENST00000498768.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	71	2	1.92319	2.8592649999999997	3.79534	0.0247322	2.17043e-4	0.12011	0.0129235
chr7	23373544	23373643	3502691	0	-	0.383838	(0.378,0.408]	chr7	326877	105	INTRON	INTRON	IGF2BP3	ENSG00000136231.14	ENST00000258729.8:ENST00000421467.6:ENST00000468263.5:ENST00000492771.5:ENST00000479504.5:ENST00000466809.6:ENST00000491719.5:ENST00000465058.5:ENST00000469723.5:ENST00000474105.5:ENST00000476938.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	81	2	2.73557	2.85926	2.98295	0.00360869	9.47389e-4	0.0533855	0.0282007
chr14	96803167	96803266	5810912	0	+	0.464646	(0.44,0.476]	chr14	551001	30	INTRON	INTRON	VRK1	ENSG00000100749.9	ENST00000553683.2:ENST00000680538.1:ENST00000555351.2:ENST00000681195.1:ENST00000681524.1:ENST00000680084.1:ENST00000679533.1:ENST00000681598.1:ENST00000679727.1:ENST00000679758.1:ENST00000680509.1:ENST00000557222.6:ENST00000679977.1:ENST00000680387.1:ENST00000680335.1:ENST00000680683.1:ENST00000681474.1:ENST00000216639.8:ENST00000681363.1:ENST00000681538.1:ENST00000679736.1:ENST00000681176.1:ENST00000680922.1:ENST00000679903.1:ENST00000557352.2:ENST00000681101.1:ENST00000681419.1:ENST00000680348.1:ENST00000679941.1:ENST00000679452.1:ENST00000680849.1:ENST00000679770.1:ENST00000681493.1:ENST00000681778.1:ENST00000680993.1:ENST00000681355.1:ENST00000681695.1:ENST00000681344.1:ENST00000680007.1:ENST00000679918.1:ENST00000681785.1:ENST00000679816.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	59	2	2.51554	2.85922	3.2029	0.00777207	0.00308681	0.0757731	0.0510391
chr3	49040004	49040104	1691691	0	-	0.46	(0.44,0.476]	chr3	173130	63	INTRON	INTRON	QRICH1	ENSG00000198218.11	ENST00000395443.7:ENST00000357496.6:ENST00000424300.5:ENST00000489642.5:ENST00000498440.5:ENST00000479449.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	59	2	2.51554	2.85922	3.2029	0.00777207	0.00308681	0.0757731	0.0510391
chr1	211748510	211748609	630577	0	-	0.515152	(0.476,0.515]	chr1	74619	52	UTR3	UTR3:EXON_MRNA	LPGAT1	ENSG00000123684.13	ENST00000366997.9	protein_coding	protein_coding	protein_coding	protein_coding	3	61	2	2.77151	2.859215	2.94692	0.00794331	0.00288481	0.0797304	0.0475859
chr1	230086591	230086691	334272	0	+	0.42	(0.408,0.44]	chr1	38926	188	INTRON	INTRON	GALNT2	ENSG00000143641.10	ENST00000494106.1:ENST00000366672.5:ENST00000488903.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	44	2	2.82042	2.859185	2.89795	0.0120121	0.0110735	0.0962115	0.0873897
chr22	47738333	47738433	7540437	0	+	0.41	(0.408,0.44]	chr22	770740	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	ENSG00000224271	ENSG00000224271.7	ENST00000664761.1:ENST00000651071.1:ENST00000650683.1:ENST00000651536.1:ENST00000652656.1:ENST00000652072.1:ENST00000651445.1:ENST00000423737.5:ENST00000650660.1:ENST00000651056.1:ENST00000652611.1:ENST00000652399.1:ENST00000652123.1:ENST00000651311.1:ENST00000651458.1:ENST00000652505.1:ENST00000652702.2:ENST00000652030.2:ENST00000651403.1:ENST00000652228.1:ENST00000651124.1:ENST00000650972.1:ENST00000651985.1:ENST00000651637.1:ENST00000650924.1:ENST00000651003.1:ENST00000652168.1:ENST00000651948.2:ENST00000651293.1:ENST00000651939.1:ENST00000650787.1:ENST00000651517.1:ENST00000651662.1:ENST00000652690.1:ENST00000651638.1:ENST00000670853.1:ENST00000652750.1:ENST00000652080.1:ENST00000651294.1:ENST00000652164.1:ENST00000651538.1:ENST00000651033.1:ENST00000651584.1:ENST00000650884.1	lncRNA	lncRNA	lncRNA	lncRNA	2	44	2	2.82042	2.859185	2.89795	0.0120121	0.0110735	0.0962115	0.0873897
chr1	6786970	6787070	5655	0	+	0.46	(0.44,0.476]	chr1	1124	10	INTRON	INTRON	CAMTA1	ENSG00000171735.19	ENST00000303635.12:ENST00000490738.5:ENST00000476163.5:ENST00000473578.5:ENST00000557126.5:ENST00000467404.6:ENST00000461311.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	44	2	2.74372	2.859115	2.97451	0.0153007	0.00853825	0.108569	0.0780043
chr6	143071896	143071996	2975293	0	+	0.46	(0.44,0.476]	chr6	279132	104	INTRON	INTRON	AIG1	ENSG00000146416.19	ENST00000367601.8:ENST00000447498.5:ENST00000646199.1:ENST00000357847.9:ENST00000629020.2:ENST00000275235.8:ENST00000494282.6	protein_coding	protein_coding	protein_coding	protein_coding	2	44	2	2.74372	2.859115	2.97451	0.0153007	0.00853825	0.108569	0.0780043
chr9	34012357	34012454	4245481	0	-	0.474227	(0.44,0.476]	chr9	390480	3	INTRON	INTRON	UBAP2	ENSG00000137073.24	ENST00000379238.7:ENST00000683659.1:ENST00000682239.1:ENST00000683140.1:ENST00000682209.1:ENST00000681980.1:ENST00000360802.6:ENST00000683252.1:ENST00000684158.1:ENST00000682914.1:ENST00000683717.1:ENST00000379239.9:ENST00000683084.1:ENST00000684754.1:ENST00000629575.2:ENST00000684298.1:ENST00000412543.6:ENST00000480885.5:ENST00000459988.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	44	2	2.74372	2.859115	2.97451	0.0153007	0.00853825	0.108569	0.0780043
chr1	1735103	1735203	361327	0	-	0.49	(0.476,0.515]	chr1	42122	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ENSG00000268575:SLC35E2A	ENSG00000268575.1:ENSG00000215790.8	ENST00000598846.1:ENST00000647043.1:ENST00000475229.2:ENST00000246421.4:ENST00000643943.1	lncRNA	lncRNA	lncRNA:transcribed_unprocessed_pseudogene	lncRNA:processed_transcript:transcribed_unprocessed_pseudogene	4	70	2	2.13573	2.85908	3.58243	0.0119549	6.18479e-4	0.0899583	0.0223951
chr9	131152693	131152793	4215906	0	+	0.36	(0.35,0.378]	chr9	386591	4	INTRON	INTRON	NUP214	ENSG00000126883.19	ENST00000695497.1:ENST00000695498.1:ENST00000695496.1:ENST00000695495.1:ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000651022.1:ENST00000525980.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	123	2	2.7342	2.85902	2.98384	0.00125312	2.41007e-4	0.0323608	0.0136674
chr4	73248185	73248285	2160721	0	-	0.34	(0.32,0.35]	chr4	212799	252	INTRON	INTRON	ANKRD17	ENSG00000132466.20	ENST00000358602.9:ENST00000558247.5:ENST00000330838.10:ENST00000561029.1	protein_coding	protein_coding	protein_coding	protein_coding	8	169	2	2.16291	2.85901	3.55511	0.00452463	9.97929e-6	0.0595107	0.00229529
chr1	17432772	17432871	384917	0	-	0.565657	(0.515,0.57]	chr1	45493	32	INTRON	INTRON	RCC2	ENSG00000179051.14	ENST00000375436.9:ENST00000375433.3	protein_coding	protein_coding	protein_coding	protein_coding	3	50	2	2.51561	2.859005	3.2024	0.00635044	0.00322022	0.0723103	0.0507087
chr13	28203042	28203142	5461478	0	+	0.55	(0.515,0.57]	chr13	523261	53	INTRON	INTRON	PAN3	ENSG00000152520.14	ENST00000503791.5:ENST00000380958.8:ENST00000399613.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	50	2	2.51561	2.859005	3.2024	0.00635044	0.00322022	0.0723103	0.0507087
chr18	9180883	9180982	6869372	0	+	0.333333	(0.32,0.35]	chr18	680561	427	INTRON	INTRON	ANKRD12	ENSG00000101745.17	ENST00000585234.5:ENST00000262126.9:ENST00000577992.1:ENST00000540578.6:ENST00000581635.5:ENST00000400020.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	128	2	2.81262	2.858935	2.90525	0.00311322	1.48831e-4	0.0498063	0.0105921
chr12	132734071	132734171	5449288	0	-	0.5	(0.476,0.515]	chr12	521906	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ANKLE2	ENSG00000176915.15	ENST00000357997.10:ENST00000539605.5:ENST00000542374.5:ENST00000538766.1:ENST00000505031.6:ENST00000439231.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	95	2	2.74942	2.85883	2.96824	9.98194e-4	9.59979e-4	0.0290732	0.0282401
chr3	41210066	41210166	1403130	0	+	0.2	[0,0.28]	chr3	147417	93	INTRON	INTRON	CTNNB1	ENSG00000168036.18	ENST00000643541.1:ENST00000426215.5:ENST00000645210.1:ENST00000646381.1:ENST00000405570.6:ENST00000642248.1:ENST00000433400.6:ENST00000642992.1:ENST00000431914.6:ENST00000642836.1:ENST00000396185.8:ENST00000642986.1:ENST00000644678.1:ENST00000643031.1:ENST00000396183.7:ENST00000645982.1:ENST00000453024.6:ENST00000645900.1:ENST00000647264.1:ENST00000646174.1:ENST00000643992.1:ENST00000642886.1:ENST00000647390.1:ENST00000643052.1:ENST00000488914.2:ENST00000349496.11:ENST00000642426.1:ENST00000646074.1:ENST00000645276.1:ENST00000644138.1:ENST00000646116.1:ENST00000644873.1:ENST00000643865.1:ENST00000644867.1:ENST00000646725.1:ENST00000645493.1:ENST00000646369.1:ENST00000643977.1:ENST00000647413.1:ENST00000644524.1:ENST00000645305.1:ENST00000643297.1:ENST00000450969.6:ENST00000642315.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	62	2	2.49527	2.858785	3.2223	0.0436497	0.00422777	0.14882	0.0595466
chr6	88793765	88793865	3157430	0	-	0.4	(0.378,0.408]	chr6	294191	235	INTRON	INTRON	RNGTT	ENSG00000111880.16	ENST00000369485.9:ENST00000369475.7:ENST00000627296.1:ENST00000538899.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	46	2	2.71183	2.858755	3.00568	0.0170789	0.00811866	0.110899	0.0766625
chr6	13666522	13666622	3058772	0	-	0.44	(0.408,0.44]	chr6	284542	73	INTRON	INTRON	RANBP9	ENSG00000010017.13	ENST00000011619.6	protein_coding	protein_coding	protein_coding	protein_coding	11	204	2	2.24279	2.8586650000000002	3.47454	0.00167853	9.4741e-7	0.0370386	5.54959e-4
chr17	37617891	37617991	6764136	0	-	0.49	(0.476,0.515]	chr17	665162	2	SS5_PROX	SS5_PROX:INTRON	DDX52	ENSG00000278053.5	ENST00000617633.5:ENST00000616646.4:ENST00000620209.4:ENST00000614307.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	58	2	2.31726	2.858645	3.40003	0.015077	0.00139193	0.0994339	0.0341261
chr5	39054119	39054219	2605445	0	-	0.32	(0.28,0.32]	chr5	247896	326	INTRON	INTRON	RICTOR	ENSG00000164327.13	ENST00000357387.8:ENST00000511516.5:ENST00000296782.9:ENST00000510711.5:ENST00000513566.1:ENST00000514735.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	101	2	2.28563	2.858605	3.43158	0.00355956	0.00244075	0.0548355	0.0445752
chr9	137264457	137264557	4223197	0	+	0.48	(0.476,0.515]	chr9	388068	1	SS5_PROX	SS5_PROX:INTRON	NELFB	ENSG00000188986.9	ENST00000343053.6	protein_coding	protein_coding	protein_coding	protein_coding	3	59	2	2.05154	2.858595	3.66565	0.0336015	4.18031e-4	0.134145	0.0182827
chr17	18859675	18859775	6569759	0	+	0.24	[0,0.28]	chr17	638809	2	SS5_PROX	SS5_PROX:INTRON	PRPSAP2	ENSG00000141127.15	ENST00000441887.5:ENST00000610773.4:ENST00000432893.6:ENST00000573432.5:ENST00000414602.5:ENST00000574522.5:ENST00000570450.5:ENST00000492129.5:ENST00000419071.6:ENST00000573253.5:ENST00000487101.5:ENST00000536323.5:ENST00000571907.5:ENST00000419284.6:ENST00000412418.5:ENST00000268835.7:ENST00000575228.5:ENST00000395656.6:ENST00000478622.6:ENST00000575102.5:ENST00000455992.6:ENST00000576355.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	62	2	2.8569	2.8584899999999998	2.86008	0.0177015	0.013822	0.105304	0.10247
chr12	93440643	93440743	5388226	0	-	0.36	(0.35,0.378]	chr12	513728	1	SS5_PROX	SS5_PROX:INTRON	UBE2N	ENSG00000177889.10	ENST00000318066.7:ENST00000550657.1:ENST00000549833.1:ENST00000549490.1:ENST00000552442.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	63	2	2.67874	2.85844	3.03814	0.00767003	0.00373022	0.075364	0.0561984
chr2	169805918	169805997	908066	0	+	0.316456	(0.28,0.32]	chr2	100179	2	EXON_MRNA	EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SSB	ENSG00000138385.16	ENST00000422006.5:ENST00000260956.9:ENST00000417292.5:ENST00000413002.5:ENST00000461708.1:ENST00000409333.1:ENST00000468600.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	255	2	2.6904	2.858435	3.02647	5.40022e-4	2.21508e-5	0.0215026	0.00367232
chr3	196071750	196071826	1897447	0	-	0.552632	(0.515,0.57]	chr3	189962	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TFRC	ENSG00000072274.13	ENST00000420415.5:ENST00000360110.9:ENST00000392396.7:ENST00000421258.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	60	2	2.41022	2.858435	3.30665	0.00332441	0.00213226	0.0528673	0.041756
chr12	91559052	91559152	5384807	0	-	0.36	(0.35,0.378]	chr12	513485	518	INTRON	INTRON	ENSG00000289605	ENSG00000289605.1	ENST00000685093.1	lncRNA	lncRNA	lncRNA	lncRNA	2	47	2	2.66547	2.858415	3.05136	0.0233639	0.00578894	0.118323	0.0684334
chr19	17279179	17279260	7029590	0	+	0.567901	(0.515,0.57]	chr19	699898	2	UTR3	UTR3:EXON_MRNA:INTRON	BABAM1	ENSG00000105393.16	ENST00000594247.5:ENST00000359435.8:ENST00000598188.6:ENST00000601043.5:ENST00000598567.1:ENST00000601232.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	38	2	2.52504	2.85841	3.19178	0.029342	0.00289534	0.128055	0.0494641
chr6	82183322	82183421	3143109	0	-	0.525253	(0.515,0.57]	chr6	293017	9	INTRON	INTRON	IBTK	ENSG00000005700.15	ENST00000505222.5:ENST00000306270.12:ENST00000610980.4:ENST00000445419.6:ENST00000503400.5:ENST00000503631.5:ENST00000510291.5:ENST00000471036.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	38	2	2.52504	2.85841	3.19178	0.029342	0.00289534	0.128055	0.0494641
chr9	132983194	132983292	4218987	0	+	0.520408	(0.515,0.57]	chr9	387083	40	INTRON	INTRON	GFI1B	ENSG00000165702.15	ENST00000339463.7:ENST00000636137.1:ENST00000372122.4:ENST00000372123.5	protein_coding	protein_coding	protein_coding	protein_coding	2	38	2	2.52504	2.85841	3.19178	0.029342	0.00289534	0.128055	0.0494641
chr1	22085741	22085839	42544	0	+	0.367347	(0.35,0.378]	chr1	5116	36	INTRON	INTRON	ENSG00000289694:CDC42	ENSG00000289694.1:ENSG00000070831.18	ENST00000695855.1:ENST00000695856.1:ENST00000344548.8:ENST00000400259.5:ENST00000667384.2:ENST00000411827.2:ENST00000695858.1:ENST00000695857.1:ENST00000315554.14:ENST00000695859.1:ENST00000498236.1:ENST00000656825.1:ENST00000651171.1:ENST00000652582.1:ENST00000695860.1:ENST00000695796.1:ENST00000695797.1:ENST00000662562.2:ENST00000695798.1:ENST00000695799.1:ENST00000695800.1:ENST00000695801.1:ENST00000695802.1:ENST00000695861.1:ENST00000695862.1:ENST00000695863.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	48	2	2.39939	2.8583749999999997	3.31736	0.0458078	0.00211072	0.149888	0.0425419
chr1	40377300	40377400	81479	0	+	0.37	(0.35,0.378]	chr1	10553	22	INTRON	INTRON	SMAP2	ENSG00000084070.12	ENST00000435168.6:ENST00000372718.8:ENST00000372708.5	protein_coding	protein_coding	protein_coding	protein_coding	2	48	2	2.39939	2.8583749999999997	3.31736	0.0458078	0.00211072	0.149888	0.0425419
chr11	47831471	47831571	4951996	0	-	0.37	(0.35,0.378]	chr11	464617	39	INTRON	INTRON	NUP160	ENSG00000030066.14	ENST00000694866.1:ENST00000378460.7:ENST00000530326.5:ENST00000528071.5:ENST00000528501.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	48	2	2.39939	2.8583749999999997	3.31736	0.0458078	0.00211072	0.149888	0.0425419
chr6	97234280	97234380	3164274	0	-	0.36	(0.35,0.378]	chr6	295105	3	SS3_PROX	SS3_PROX:INTRON	MMS22L	ENSG00000146263.12	ENST00000683635.1:ENST00000275053.8:ENST00000369251.6:ENST00000509383.5:ENST00000510018.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	48	2	2.39939	2.8583749999999997	3.31736	0.0458078	0.00211072	0.149888	0.0425419
chr21	29044295	29044394	7390171	0	+	0.353535	(0.35,0.378]	chr21	753021	3	INTRON	INTRON	USP16	ENSG00000156256.15	ENST00000399975.7:ENST00000334352.8:ENST00000474835.5:ENST00000399976.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	47	2	2.72497	2.8583499999999997	2.99173	0.0198266	0.00713365	0.109608	0.0756118
chr16	70672311	70672411	6512049	0	-	0.36	(0.35,0.378]	chr16	630830	64	INTRON	INTRON	MTSS2	ENSG00000132613.16	ENST00000338779.11	protein_coding	protein_coding	protein_coding	protein_coding	3	63	2	2.54421	2.858325	3.17244	0.00630238	0.00487788	0.0722266	0.0607461
chr7	139420190	139420288	3438207	0	+	0.489796	(0.476,0.515]	chr7	320382	21	INTRON	INTRON	LUC7L2:FMC1-LUC7L2	ENSG00000146963.18:ENSG00000269955.2	ENST00000541170.7:ENST00000541515.3:ENST00000619796.4:ENST00000354926.9:ENST00000456182.5:ENST00000263545.7:ENST00000498518.1:ENST00000482860.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	17	300	2	2.70629	2.858315	3.01034	3.14285e-5	6.60724e-6	0.00467677	0.00181159
chr2	39119735	39119835	1102325	0	-	0.51	(0.476,0.515]	chr2	118304	214	INTRON	INTRON	SOS1	ENSG00000115904.15	ENST00000692089.1:ENST00000402219.8:ENST00000690876.1:ENST00000395038.6:ENST00000691229.1:ENST00000689668.1:ENST00000690679.1:ENST00000461545.2:ENST00000451331.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	96	2	1.91202	2.858285	3.80455	0.00593312	3.04782e-4	0.0696183	0.0161236
chr12	22652340	22652439	5095018	0	+	0.393939	(0.378,0.408]	chr12	481236	59	INTRON	INTRON	ETNK1	ENSG00000139163.16	ENST00000671733.1:ENST00000266517.9:ENST00000538218.2:ENST00000673496.1:ENST00000673406.1:ENST00000672995.1:ENST00000539974.1:ENST00000673188.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	45	2	2.60296	2.8582799999999997	3.1136	0.0267851	0.00443339	0.123349	0.061054
chr6	135039272	135039372	3225318	0	-	0.38	(0.378,0.408]	chr6	299854	3	SS5_PROX	SS5_PROX:INTRON	HBS1L	ENSG00000112339.15	ENST00000367837.10:ENST00000415177.6:ENST00000367826.6:ENST00000533274.5:ENST00000526100.5:ENST00000314674.7:ENST00000524715.5:ENST00000529882.5:ENST00000367822.9:ENST00000367820.6:ENST00000525067.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	45	2	2.60296	2.8582799999999997	3.1136	0.0267851	0.00443339	0.123349	0.061054
chr6	127307588	127307688	3211494	0	-	0.41	(0.408,0.44]	chr6	298724	130	INTRON	INTRON	ECHDC1	ENSG00000093144.19	ENST00000454859.8:ENST00000531967.5:ENST00000474289.6:ENST00000368295.8:ENST00000454591.6:ENST00000528402.5:ENST00000479525.6:ENST00000368291.6:ENST00000475319.1:ENST00000430841.6:ENST00000368289.6:ENST00000417628.6:ENST00000368292.10:ENST00000436638.5:ENST00000460558.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	63	2	2.82461	2.85827	2.89193	0.00950364	0.00241819	0.0863579	0.0442901
chr17	27152502	27152602	6580350	0	+	0.52	(0.515,0.57]	chr17	639586	557	INTRON	INTRON	ENSG00000285822	ENSG00000285822.1	ENST00000649401.1	lncRNA	lncRNA	lncRNA	lncRNA	2	40	2	2.46104	2.8582549999999998	3.25547	0.032841	0.00261721	0.145164	0.0455413
chr20	63209680	63209780	7362716	0	-	0.43	(0.408,0.44]	chr20	751230	55	INTRON	INTRON	YTHDF1	ENSG00000149658.18	ENST00000370339.8:ENST00000370334.4	protein_coding	protein_coding	protein_coding	protein_coding	6	108	2	2.28817	2.858225	3.42828	0.00358507	9.1223e-5	0.0533855	0.00798362
chr19	21455994	21456093	7158764	0	-	0.313131	(0.28,0.32]	chr19	723692	41	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ENSG00000268119	ENSG00000268119.7	ENST00000596705.5:ENST00000597444.6:ENST00000594557.1:ENST00000599993.7:ENST00000600469.7:ENST00000656526.1:ENST00000663704.1:ENST00000593653.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	3	73	2	2.67153	2.85819	3.04485	0.00894006	0.00436402	0.0799922	0.060356
chr1	226175295	226175394	646944	0	-	0.30303	(0.28,0.32]	chr1	76667	89	INTRON	INTRON	ACBD3	ENSG00000182827.9	ENST00000366812.6	protein_coding	protein_coding	protein_coding	protein_coding	4	45	2	1.47299	2.858095	4.2432	0.0597769	0.0479043	0.189982	0.153019
chr16	67780571	67780671	6505423	0	-	0.38	(0.378,0.408]	chr16	629654	81	INTRON	INTRON	RANBP10	ENSG00000141084.12	ENST00000317506.8:ENST00000448631.6:ENST00000602506.5:ENST00000602677.5:ENST00000602525.5:ENST00000602638.5:ENST00000602815.5:ENST00000602887.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	45	2	2.78946	2.8580550000000002	2.92665	0.0158859	0.0086017	0.101453	0.083729
chr19	4100168	4100263	7119296	0	-	0.568421	(0.515,0.57]	chr19	716149	9	EXON_MRNA	EXON_MRNA:INTRON	MAP2K2	ENSG00000126934.15	ENST00000262948.10:ENST00000689792.1:ENST00000601786.5:ENST00000600584.5:ENST00000394867.9:ENST00000597263.5:ENST00000688002.1:ENST00000599021.1:ENST00000687128.1:ENST00000593364.5:ENST00000602167.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	38	2	2.74772	2.85793	2.96814	0.0142192	0.00756432	0.103638	0.0749063
chr3	45676821	45676921	1416937	0	+	0.54	(0.515,0.57]	chr3	148643	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	LIMD1	ENSG00000144791.10	ENST00000273317.5	protein_coding	protein_coding	protein_coding	protein_coding	2	38	2	2.74772	2.85793	2.96814	0.0142192	0.00756432	0.103638	0.0749063
chr9	125006258	125006358	4350601	0	-	0.55	(0.515,0.57]	chr9	399484	23	INTRON	INTRON	SCAI	ENSG00000173611.18	ENST00000336505.11:ENST00000373549.8:ENST00000477186.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	38	2	2.74772	2.85793	2.96814	0.0142192	0.00756432	0.103638	0.0749063
chr9	136891539	136891639	4222237	0	+	0.53	(0.515,0.57]	chr9	387796	6	INTRON	INTRON	TRAF2	ENSG00000127191.18	ENST00000419057.5:ENST00000429509.5:ENST00000247668.7:ENST00000414589.1	protein_coding	protein_coding	protein_coding	protein_coding	2	38	2	2.74772	2.85793	2.96814	0.0142192	0.00756432	0.103638	0.0749063
chr7	128484564	128484662	3407151	0	+	0.479592	(0.476,0.515]	chr7	318292	13	INTRON	INTRON	ENSG00000273184:METTL2B	ENSG00000273184.1:ENSG00000165055.16	ENST00000462662.1:ENST00000482555.5:ENST00000262432.13:ENST00000497665.5:ENST00000480046.5:ENST00000419443.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA	5	80	2	1.89682	2.8578799999999998	3.81894	0.0158424	1.96038e-4	0.101453	0.0122528
chr1	182869539	182869639	273296	0	+	0.51	(0.476,0.515]	chr1	31933	21	INTRON	INTRON	DHX9	ENSG00000135829.17	ENST00000367549.4	protein_coding	protein_coding	protein_coding	protein_coding	3	58	2	2.26789	2.857865	3.44784	0.0176567	0.00113238	0.105233	0.0308465
chr1	212309388	212309487	308316	0	+	0.464646	(0.44,0.476]	chr1	35566	21	INTRON	INTRON	PPP2R5A	ENSG00000066027.12	ENST00000261461.7:ENST00000537030.3:ENST00000498129.6:ENST00000479259.1:ENST00000498123.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	46	2	2.20949	2.857665	3.50584	0.0672585	8.66138e-4	0.183051	0.0266729
chr17	49824481	49824567	6625686	0	+	0.476744	(0.476,0.515]	chr17	646787	1	EXON_LNCRNA	EXON_LNCRNA:INTRON	KAT7	ENSG00000136504.13	ENST00000675278.1:ENST00000259021.9:ENST00000454930.6:ENST00000509773.5:ENST00000510819.5:ENST00000424009.6:ENST00000435742.2:ENST00000513171.5:ENST00000514540.5:ENST00000513980.5:ENST00000512616.5:ENST00000509794.5:ENST00000513075.1:ENST00000503101.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	81	2	2.09066	2.85765	3.62464	0.00772252	5.079e-4	0.0756858	0.0202328
chr10	45987737	45987836	4430538	0	+	0.40404	(0.378,0.408]	chr10	408486	19	INTRON	INTRON	TIMM23	ENSG00000265354.4	ENST00000580018.4	protein_coding	protein_coding	protein_coding	protein_coding	4	81	2	2.76893	2.85753	2.94613	0.00316735	0.00112461	0.0503085	0.0308177
chr8	41991957	41992057	3940705	0	-	0.33	(0.32,0.35]	chr8	361223	40	INTRON	INTRON	KAT6A	ENSG00000083168.11	ENST00000406337.6:ENST00000265713.8:ENST00000396930.4:ENST00000648335.1:ENST00000649827.1:ENST00000485568.5:ENST00000647809.1:ENST00000648030.1:ENST00000650356.1:ENST00000470574.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	69	2	2.53107	2.857495	3.18392	0.00860484	0.00379806	0.0784134	0.0562562
chr10	46798954	46799050	4430846	0	+	0.375	(0.35,0.378]	chr10	408538	4	INTRON	INTRON	BMS1P1	ENSG00000204177.11	ENST00000580094.5:ENST00000690946.1:ENST00000688259.1:ENST00000685496.1:ENST00000374336.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	4	86	2	2.80179	2.85748	2.91317	0.00223906	0.00189062	0.0435144	0.0392053
chr16	8041623	8041723	6440925	0	-	0.34	(0.32,0.35]	chr16	620351	340	INTRON	INTRON	ENSG00000260289	ENSG00000260289.2	ENST00000670665.1:ENST00000654046.1:ENST00000567103.2	lncRNA	lncRNA	lncRNA	lncRNA	3	70	2	2.19668	2.85738	3.51808	0.021398	0.00151238	0.123719	0.0352794
chr10	63408353	63408453	4634815	0	-	0.41	(0.408,0.44]	chr10	426236	275	INTRON	INTRON	JMJD1C	ENSG00000171988.20	ENST00000399262.7:ENST00000633035.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	113	2	2.72323	2.8573500000000003	2.99147	0.00114246	2.05062e-4	0.0307966	0.0124557
chr17	22145865	22145965	6579122	0	+	0.42	(0.408,0.44]	chr17	639556	546	INTRON	INTRON	UBBP4	ENSG00000263563.7	ENST00000648259.1:ENST00000688301.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	6	113	2	2.72323	2.8573500000000003	2.99147	0.00114246	2.05062e-4	0.0307966	0.0124557
chr19	2787034	2787134	6997457	0	+	0.49	(0.476,0.515]	chr19	693774	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	THOP1	ENSG00000172009.15	ENST00000307741.11:ENST00000585673.5:ENST00000585338.1:ENST00000586780.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	38	2	1.7425	2.857255	3.97201	0.0417334	0.030904	0.147007	0.143385
chr3	33810197	33810297	1394495	0	+	0.39	(0.378,0.408]	chr3	146021	103	INTRON	INTRON	PDCD6IP	ENSG00000170248.15	ENST00000457054.6:ENST00000648706.1:ENST00000435909.5:ENST00000430877.5:ENST00000413073.1:ENST00000307296.8:ENST00000477798.5:ENST00000498147.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	82	2	2.43657	2.857205	3.27784	0.0106733	2.17147e-4	0.0861859	0.0129235
chr7	148855504	148855604	3670475	0	-	0.39	(0.378,0.408]	chr7	340628	78	INTRON	INTRON	EZH2	ENSG00000106462.12	ENST00000683292.1:ENST00000320356.7:ENST00000492143.5:ENST00000478654.5:ENST00000350995.6:ENST00000460911.5:ENST00000683744.1:ENST00000682317.1:ENST00000682263.1:ENST00000684300.1:ENST00000476773.5:ENST00000483967.5:ENST00000498186.5:ENST00000483012.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	82	2	2.43657	2.857205	3.27784	0.0106733	2.17147e-4	0.0861859	0.0129235
chr12	14441439	14441538	5083489	0	+	0.323232	(0.32,0.35]	chr12	480450	28	INTRON	INTRON	ATF7IP	ENSG00000171681.13	ENST00000539659.5:ENST00000537653.5:ENST00000261168.9:ENST00000538511.5:ENST00000543189.5:ENST00000536444.5:ENST00000544627.5:ENST00000541654.1:ENST00000540793.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	50	2	2.68921	2.856955	3.0247	0.0230336	0.00671684	0.118056	0.0738715
chr17	47136851	47136951	6788844	0	-	0.33	(0.32,0.35]	chr17	669538	3	SS5_PROX	SS5_PROX:INTRON	CDC27	ENSG00000004897.12	ENST00000066544.8:ENST00000531206.5:ENST00000533415.5:ENST00000571643.5:ENST00000527547.5:ENST00000526866.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	50	2	2.68921	2.856955	3.0247	0.0230336	0.00671684	0.118056	0.0738715
chr2	32456340	32456439	731795	0	+	0.333333	(0.32,0.35]	chr2	84399	20	INTRON	INTRON	BIRC6	ENSG00000115760.15	ENST00000421745.7:ENST00000648282.1	protein_coding	protein_coding	protein_coding	protein_coding	2	50	2	2.68921	2.856955	3.0247	0.0230336	0.00671684	0.118056	0.0738715
chr4	73201401	73201501	2160252	0	-	0.24	[0,0.28]	chr4	212794	235	INTRON	INTRON	ANKRD17	ENSG00000132466.20	ENST00000358602.9:ENST00000558247.5:ENST00000330838.10:ENST00000509867.6:ENST00000561029.1:ENST00000559367.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	84	2	2.33825	2.856775	3.3753	0.0195228	0.00242466	0.109483	0.0454587
chr2	235517029	235517129	1041565	0	+	0.53	(0.515,0.57]	chr2	111217	218	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	35	2	1.62814	2.85676	4.08538	0.035203	0.0253843	0.150193	0.12011
chr1	95140842	95140942	166802	0	+	0.39	(0.378,0.408]	chr1	18105	1	SS5_PROX	SS5_PROX:INTRON	TLCD4:TLCD4-RWDD3	ENSG00000152078.10:ENSG00000271092.5	ENST00000370203.9:ENST00000456991.5:ENST00000604534.5:ENST00000455656.1:ENST00000463375.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	97	2	2.81806	2.85662	2.89518	0.00190046	5.36236e-4	0.0393643	0.0209287
chr14	73716491	73716589	5920151	0	-	0.44898	(0.44,0.476]	chr14	562290	15	UTR3	UTR3:EXON_MRNA	MIDEAS	ENSG00000156030.14	ENST00000394071.6:ENST00000423556.7:ENST00000476562.5:ENST00000286523.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	84	2	1.65297	2.8566	4.06023	0.0331814	9.08057e-5	0.145918	0.00848604
chr7	132974668	132974768	3644811	0	-	0.47	(0.44,0.476]	chr7	338854	1	SS5_PROX	SS5_PROX:INTRON	CHCHD3	ENSG00000106554.13	ENST00000262570.10:ENST00000448878.6:ENST00000496427.5:ENST00000423635.5:ENST00000481152.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	46	2	2.49112	2.8565199999999997	3.22192	0.0315968	0.00360821	0.144381	0.0533855
chr9	97511675	97511775	4171688	0	+	0.47	(0.44,0.476]	chr9	380069	95	INTRON	INTRON	TMOD1	ENSG00000136842.14	ENST00000395211.6:ENST00000259365.9	protein_coding	protein_coding	protein_coding	protein_coding	2	46	2	2.49112	2.8565199999999997	3.22192	0.0315968	0.00360821	0.144381	0.0533855
chr7	139416971	139417066	3438174	0	+	0.263158	[0,0.28]	chr7	320378	10	EXON_LNCRNA	EXON_LNCRNA:SS3_PROX:INTRON	LUC7L2:FMC1-LUC7L2	ENSG00000146963.18:ENSG00000269955.2	ENST00000541170.7:ENST00000541515.3:ENST00000619796.4:ENST00000354926.9:ENST00000456182.5:ENST00000263545.7:ENST00000498518.1:ENST00000482860.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	137	2	2.62887	2.8564100000000003	3.08395	0.00205554	0.00163044	0.0420839	0.0368492
chr13	20855426	20855526	5555869	0	-	0.34	(0.32,0.35]	chr13	531007	4	SS5_PROX	SS5_PROX:INTRON	XPO4	ENSG00000132953.18	ENST00000255305.11	protein_coding	protein_coding	protein_coding	protein_coding	4	81	2	2.22655	2.856375	3.4862	0.00823133	0.001711	0.0812969	0.037419
chr16	21510832	21510932	6461465	0	-	0.47	(0.44,0.476]	chr16	623383	43	INTRON	INTRON	SMG1P3	ENSG00000180747.15	ENST00000522841.6:ENST00000437413.2:ENST00000435197.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	10	181	2	2.62165	2.85627	3.09089	3.987e-4	1.43594e-5	0.0185763	0.00284044
chr15	68095683	68095783	6056370	0	+	0.52	(0.515,0.57]	chr15	576567	74	INTRON	INTRON	PIAS1	ENSG00000033800.14	ENST00000564915.5:ENST00000249636.11:ENST00000562190.1:ENST00000545237.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	39	2	2.34087	2.85606	3.37125	0.0469761	0.00136343	0.151917	0.0339121
chr12	116272964	116273063	5425504	0	-	0.363636	(0.35,0.378]	chr12	518291	349	INTRON	INTRON	MED13L	ENSG00000123066.9	ENST00000281928.9:ENST00000650226.1:ENST00000548743.2:ENST00000551197.2:ENST00000650375.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	47	2	2.60341	2.85602	3.10863	0.0275785	0.00470896	0.123904	0.0631419
chr2	39076370	39076470	1101891	0	-	0.36	(0.35,0.378]	chr2	118302	78	INTRON	INTRON	SOS1	ENSG00000115904.15	ENST00000692089.1:ENST00000402219.8:ENST00000690876.1:ENST00000395038.6:ENST00000691229.1:ENST00000689668.1:ENST00000690679.1:ENST00000461545.2:ENST00000451331.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	47	2	2.60341	2.85602	3.10863	0.0275785	0.00470896	0.123904	0.0631419
chr5	134777894	134777976	2490572	0	+	0.280488	(0.28,0.32]	chr5	237904	1	SS5_PROX	SS5_PROX:INTRON	DDX46	ENSG00000145833.16	ENST00000628477.2:ENST00000452510.7:ENST00000507392.5:ENST00000354283.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	76	2	2.67975	2.855985	3.03222	0.0252505	9.72587e-4	0.12011	0.0287313
chr12	121328117	121328216	5436932	0	-	0.353535	(0.35,0.378]	chr12	519876	10	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	ANAPC5	ENSG00000089053.13	ENST00000261819.8:ENST00000535641.5:ENST00000541887.5:ENST00000534976.5:ENST00000441917.6:ENST00000539079.5:ENST00000544314.5:ENST00000535482.1:ENST00000545218.5:ENST00000535472.5:ENST00000538334.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	180	2	2.46972	2.855955	3.24219	4.4837e-4	1.23534e-4	0.0196044	0.00950674
chr1	89849656	89849756	159812	0	+	0.34	(0.32,0.35]	chr1	17285	26	INTRON	INTRON	LRRC8D	ENSG00000171492.14	ENST00000525774.5:ENST00000337338.9:ENST00000394593.7:ENST00000532201.5:ENST00000414841.1:ENST00000527156.1:ENST00000441269.2	protein_coding	protein_coding	protein_coding	protein_coding	2	50	2	2.6321	2.855925	3.07975	0.0268	0.00554235	0.123349	0.0674105
chr2	43963387	43963487	1110283	0	-	0.38	(0.378,0.408]	chr2	119085	4	SS5_PROX	SS5_PROX:INTRON	LRPPRC	ENSG00000138095.20	ENST00000260665.12:ENST00000682308.1:ENST00000683459.1:ENST00000683623.1:ENST00000683125.1:ENST00000683994.1:ENST00000684619.1:ENST00000683833.1:ENST00000682546.1:ENST00000682585.1:ENST00000683220.1:ENST00000683796.1:ENST00000683590.1:ENST00000684306.1:ENST00000683213.1:ENST00000682779.1:ENST00000682885.1:ENST00000683346.1:ENST00000683072.1:ENST00000682303.1:ENST00000683329.1:ENST00000684383.1:ENST00000682480.1:ENST00000684290.1:ENST00000684341.1:ENST00000682595.1:ENST00000683802.1:ENST00000681961.1:ENST00000683694.1:ENST00000683989.1:ENST00000447246.2:ENST00000409659.6:ENST00000682104.1:ENST00000683934.1:ENST00000681959.1:ENST00000684482.1:ENST00000683082.1:ENST00000467058.2:ENST00000409946.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	151	2	2.58718	2.8559	3.12462	5.3569e-4	1.00937e-4	0.0214409	0.00848303
chr8	90330753	90330853	3793401	0	+	0.36	(0.35,0.378]	chr8	351786	836	INTRON	INTRON	LINC00534	ENSG00000253394.7	ENST00000662145.1:ENST00000655523.1:ENST00000517400.6:ENST00000658299.1:ENST00000663329.1:ENST00000658342.1:ENST00000523283.6:ENST00000655219.1:ENST00000662692.1:ENST00000667296.1:ENST00000667565.1:ENST00000523406.2:ENST00000659030.1:ENST00000653734.1:ENST00000654785.1:ENST00000524361.5:ENST00000668745.1:ENST00000666641.2:ENST00000661519.1:ENST00000671657.1:ENST00000655123.1:ENST00000663098.1:ENST00000670903.1:ENST00000654946.1	lncRNA	lncRNA	lncRNA	lncRNA	2	47	2	2.78212	2.85582	2.92952	0.0168532	0.00881187	0.103549	0.084878
chr1	223741701	223741801	320547	0	+	0.48	(0.476,0.515]	chr1	36860	235	INTRON	INTRON	CAPN2	ENSG00000162909.18	ENST00000433674.6:ENST00000434648.5:ENST00000295006.6	protein_coding	protein_coding	protein_coding	protein_coding	2	43	2	2.69967	2.8558199999999996	3.01197	0.0195838	0.00633162	0.109483	0.0722266
chr10	67911199	67911296	4440674	0	+	0.494845	(0.476,0.515]	chr10	409463	14	INTRON	INTRON	SIRT1	ENSG00000096717.12	ENST00000212015.11:ENST00000432464.5:ENST00000406900.5:ENST00000403579.1	protein_coding	protein_coding	protein_coding	protein_coding	2	43	2	2.69967	2.8558199999999996	3.01197	0.0195838	0.00633162	0.109483	0.0722266
chr12	101714163	101714237	5203177	0	+	0.486486	(0.476,0.515]	chr12	492664	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CHPT1	ENSG00000111666.11	ENST00000550385.1:ENST00000229266.8:ENST00000549872.5:ENST00000552351.5:ENST00000549128.5:ENST00000546490.1:ENST00000552215.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	43	2	2.69967	2.8558199999999996	3.01197	0.0195838	0.00633162	0.109483	0.0722266
chr1	65341912	65342012	136414	0	+	0.39	(0.378,0.408]	chr1	15352	316	INTRON	INTRON	DNAJC6	ENSG00000116675.16	ENST00000463018.5:ENST00000494710.6:ENST00000263441.11:ENST00000395325.7:ENST00000483402.1:ENST00000371069.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	62	2	2.23831	2.855765	3.47322	0.0179575	0.00147803	0.114265	0.0348908
chr20	47347455	47347555	7349419	0	-	0.51	(0.476,0.515]	chr20	749347	2	SS5_PROX	SS5_PROX:INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000435836.5:ENST00000446894.5:ENST00000441977.1	protein_coding	protein_coding	protein_coding	protein_coding	2	43	2	2.7646	2.85576	2.94692	0.0162075	0.00794331	0.101453	0.0797304
chr5	53939519	53939619	2617199	0	-	0.49	(0.476,0.515]	chr5	248835	275	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	43	2	2.7646	2.85576	2.94692	0.0162075	0.00794331	0.101453	0.0797304
chr10	22654333	22654432	4579897	0	-	0.363636	(0.35,0.378]	chr10	422028	77	INTRON	INTRON	PIP4K2A	ENSG00000150867.14	ENST00000376573.9:ENST00000545335.5:ENST00000605011.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	63	2	2.72093	2.8556850000000003	2.99044	0.00894806	0.00314173	0.0799922	0.0514466
chr12	122104660	122104760	5240121	0	+	0.54	(0.515,0.57]	chr12	497496	250	INTRON	INTRON	MLXIP	ENSG00000175727.14	ENST00000319080.12	protein_coding	protein_coding	protein_coding	protein_coding	3	50	2	2.45585	2.85566	3.25547	0.00797827	0.00261721	0.0798772	0.0455413
chr12	54238281	54238381	5330471	0	-	0.41	(0.408,0.44]	chr12	508602	75	UTR3	UTR3:EXON_MRNA	CBX5	ENSG00000094916.16	ENST00000209875.9	protein_coding	protein_coding	protein_coding	protein_coding	25	442	2	2.77651	2.8556049999999997	2.9347	1.43555e-5	1.20387e-6	0.0030273	6.38418e-4
chr9	130804953	130805053	4214774	0	+	0.31	(0.28,0.32]	chr9	386427	901	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000393293.4	protein_coding	protein_coding	protein_coding	protein_coding	3	75	2	2.53648	2.855505	3.17453	0.00925866	0.00429297	0.0817766	0.0599065
chr19	23809164	23809252	7042900	0	+	0.386364	(0.378,0.408]	chr19	702237	5	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	RPSAP58	ENSG00000288920.1	ENST00000471224.5:ENST00000692590.1:ENST00000475499.2:ENST00000686829.1:ENST00000689525.1:ENST00000691397.1:ENST00000688405.1:ENST00000687994.1:ENST00000484897.4:ENST00000685490.1:ENST00000462186.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	145	2	2.31091	2.85545	3.39999	5.71091e-4	1.88104e-4	0.0217398	0.012549
chr16	343649	343749	6426766	0	-	0.49	(0.476,0.515]	chr16	617500	286	INTRON	INTRON	AXIN1	ENSG00000103126.15	ENST00000262320.8:ENST00000461023.5:ENST00000354866.7:ENST00000481769.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	58	2	2.21677	2.8554399999999998	3.49411	0.0207026	9.23453e-4	0.110999	0.0278392
chr15	30667688	30667788	5992698	0	+	0.43	(0.408,0.44]	chr15	569767	85	INTRON	INTRON	ENSG00000284906:ENSG00000285035:ENSG00000187951	ENSG00000284906.3:ENSG00000285035.2:ENSG00000187951.11	ENST00000685924.1:ENST00000563110.6:ENST00000566548.5:ENST00000602616.6:ENST00000562954.1	protein_coding	protein_coding	protein_coding:lncRNA:transcribed_unprocessed_pseudogene	protein_coding:nonsense_mediated_decay:lncRNA:processed_transcript	7	97	2	1.98319	2.8554	3.72761	0.0042785	4.662e-4	0.0598356	0.0199613
chr10	125061225	125061325	4713341	0	-	0.57	(0.515,0.57]	chr10	434897	217	INTRON	INTRON	CTBP2	ENSG00000175029.17	ENST00000337195.9:ENST00000411419.6:ENST00000494626.6:ENST00000531469.5:ENST00000460976.5:ENST00000476817.1:ENST00000530884.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	39	2	2.56306	2.85518	3.1473	0.0247751	0.00397184	0.131869	0.0549214
chr6	37856097	37856197	2857396	0	+	0.5	(0.476,0.515]	chr6	270225	357	INTRON	INTRON	ZFAND3	ENSG00000156639.12	ENST00000287218.9:ENST00000373391.6:ENST00000474522.5	protein_coding	protein_coding	protein_coding	protein_coding	7	118	2	2.51245	2.85513	3.19781	4.93325e-4	4.3655e-4	0.0201056	0.0191798
chr4	150976130	150976230	2271380	0	-	0.4	(0.378,0.408]	chr4	220921	467	INTRON	INTRON	LRBA	ENSG00000198589.14	ENST00000357115.9:ENST00000651943.2:ENST00000510413.5:ENST00000651035.1:ENST00000507224.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	77	2	1.53052	2.855125	4.17973	0.0744544	2.85856e-5	0.192012	0.00423319
chr19	19493502	19493599	7036235	0	+	0.474227	(0.44,0.476]	chr19	701481	4	INTRON	INTRON	GATAD2A	ENSG00000167491.18	ENST00000360315.7:ENST00000609040.5:ENST00000683918.1:ENST00000404158.5:ENST00000358713.7:ENST00000418032.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	45	2	2.29842	2.85509	3.41176	0.0552483	0.00130987	0.165463	0.0333932
chr20	34922042	34922123	7261463	0	+	0.45679	(0.44,0.476]	chr20	737715	2	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	ACSS2	ENSG00000131069.20	ENST00000481284.5:ENST00000477932.5:ENST00000480978.5:ENST00000360596.7:ENST00000253382.5:ENST00000476922.5:ENST00000491533.5:ENST00000470315.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	45	2	2.29842	2.85509	3.41176	0.0552483	0.00130987	0.165463	0.0333932
chr1	1393960	1394053	359860	0	-	0.483871	(0.476,0.515]	chr1	41791	1	INTRON	INTRON	CCNL2	ENSG00000221978.13	ENST00000400809.8:ENST00000482621.5:ENST00000496007.5:ENST00000481223.6:ENST00000488340.5:ENST00000471930.5:ENST00000408918.8:ENST00000473872.5:ENST00000425598.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	167	2	2.0459	2.8550750000000003	3.66425	0.00285079	3.19095e-6	0.0474835	0.00115727
chr3	184179581	184179679	1581890	0	+	0.357143	(0.35,0.378]	chr3	163373	5	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	AP2M1	ENSG00000161203.14	ENST00000382456.7:ENST00000686364.1:ENST00000448139.6:ENST00000484469.6:ENST00000688830.1:ENST00000686942.1:ENST00000292807.9:ENST00000461733.6:ENST00000455925.2:ENST00000468048.6:ENST00000466598.6:ENST00000487958.6:ENST00000687623.1:ENST00000685290.1:ENST00000684853.1:ENST00000688579.1:ENST00000685698.1:ENST00000480260.2:ENST00000692019.1:ENST00000460862.6:ENST00000427072.6:ENST00000411763.6:ENST00000442686.2:ENST00000431779.6:ENST00000690285.1:ENST00000472560.6:ENST00000621863.5:ENST00000439647.5:ENST00000432591.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	104	2	2.13524	2.854895	3.57455	0.0130865	4.59859e-5	0.0934394	0.00552588
chr7	65758745	65758817	3322816	0	+	0.486111	(0.476,0.515]	chr7	308981	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CCT6P1	ENSG00000228409.7	ENST00000686363.1:ENST00000688735.1:ENST00000689814.1:ENST00000690196.1:ENST00000690636.1:ENST00000687809.1:ENST00000688944.1:ENST00000691983.1:ENST00000688184.1:ENST00000688478.1:ENST00000443108.7:ENST00000686689.1:ENST00000689785.1:ENST00000685316.1:ENST00000442266.3:ENST00000685398.1:ENST00000434500.6	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	4	71	2	1.96833	2.854885	3.74144	0.0195007	4.08784e-4	0.119967	0.0185763
chrX	73963201	73963301	7682289	0	+	0.53	(0.515,0.57]	chrX	786633	4	SS5_PROX	SS5_PROX:INTRON	JPX	ENSG00000225470.8	ENST00000664637.1:ENST00000639185.1:ENST00000655090.1:ENST00000640437.1:ENST00000660546.1:ENST00000667886.1:ENST00000660840.1:ENST00000657179.1:ENST00000670506.1:ENST00000657910.1:ENST00000662120.1:ENST00000671207.1:ENST00000659254.1:ENST00000656624.1:ENST00000667573.1:ENST00000660856.1:ENST00000660836.1:ENST00000668590.1:ENST00000658649.1:ENST00000414209.6:ENST00000654137.1:ENST00000670994.1:ENST00000653479.1:ENST00000602772.5:ENST00000655879.1:ENST00000657372.1:ENST00000657096.1:ENST00000602985.6:ENST00000670685.1:ENST00000670503.1:ENST00000663027.1:ENST00000654995.1:ENST00000602895.6:ENST00000654374.1:ENST00000660087.1:ENST00000665032.1:ENST00000671336.1:ENST00000671476.1:ENST00000667057.1:ENST00000670192.1:ENST00000670464.1:ENST00000665345.1:ENST00000661546.1:ENST00000662543.1:ENST00000602938.6:ENST00000664295.1:ENST00000654005.1:ENST00000669149.1:ENST00000659852.1:ENST00000656509.1:ENST00000602294.6:ENST00000667294.1:ENST00000663470.1:ENST00000602920.6:ENST00000671021.1:ENST00000659849.1:ENST00000667937.1:ENST00000661130.1:ENST00000654196.1:ENST00000655994.1:ENST00000659373.1:ENST00000662239.1:ENST00000670805.1:ENST00000656263.1:ENST00000653069.1:ENST00000657638.1:ENST00000653808.1:ENST00000653929.1:ENST00000653885.1:ENST00000659023.1:ENST00000602546.5:ENST00000659622.1:ENST00000671518.1:ENST00000670408.1	lncRNA	lncRNA	lncRNA	lncRNA	20	305	2	2.53649	2.8548150000000003	3.17314	2.58236e-5	8.72897e-7	0.00400663	5.74603e-4
chr3	177172314	177172414	1872197	0	-	0.32	(0.28,0.32]	chr3	187438	10	INTRON	INTRON	TBL1XR1	ENSG00000177565.18	ENST00000457928.7:ENST00000430069.5:ENST00000673974.1:ENST00000352800.10:ENST00000422442.6:ENST00000428970.5:ENST00000424913.5:ENST00000437738.5:ENST00000431421.5:ENST00000635794.1:ENST00000630796.2:ENST00000450267.5:ENST00000630833.2:ENST00000431674.5:ENST00000422066.5:ENST00000443315.5:ENST00000627825.2:ENST00000427349.5:ENST00000413084.5:ENST00000637137.1:ENST00000491623.2:ENST00000637544.1:ENST00000636187.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	102	2	2.29708	2.854815	3.41255	0.0195087	1.55656e-4	0.109483	0.0106835
chr22	42519020	42519116	7594418	0	-	0.53125	(0.515,0.57]	chr22	777774	3	SS3_PROX	SS3_PROX:INTRON	RRP7A	ENSG00000189306.11	ENST00000323013.7:ENST00000416699.5:ENST00000483303.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	34	2	1.811	2.85478	3.89856	0.0325989	0.0280943	0.137011	0.133687
chr7	158772840	158772940	3689240	0	-	0.42	(0.408,0.44]	chr7	342388	1	SS5_PROX	SS5_PROX:INTRON	ESYT2	ENSG00000117868.18	ENST00000251527.10:ENST00000275418.13:ENST00000652148.1	protein_coding	protein_coding	protein_coding	protein_coding	21	374	2	2.59431	2.8544549999999997	3.1146	7.12974e-5	5.21193e-7	0.0075904	3.88963e-4
chr2	8797452	8797535	1061620	0	-	0.39759	(0.378,0.408]	chr2	113234	2	INTRON	INTRON	KIDINS220	ENSG00000134313.17	ENST00000569008.2:ENST00000689369.1:ENST00000693394.1:ENST00000689852.1:ENST00000693432.1:ENST00000496383.5:ENST00000256707.8:ENST00000687912.1:ENST00000685097.1:ENST00000473731.5:ENST00000687894.1:ENST00000691030.1:ENST00000686906.1:ENST00000488729.5:ENST00000489024.5:ENST00000459813.2:ENST00000692419.1:ENST00000689531.1:ENST00000686179.1:ENST00000692889.1:ENST00000687240.1:ENST00000690607.1:ENST00000319688.5:ENST00000689114.1:ENST00000685274.1:ENST00000693366.1:ENST00000691349.1:ENST00000693249.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	60	2	2.70298	2.85433	3.00568	0.00811866	0.00325723	0.0766625	0.0524329
chr2	112651652	112651749	852120	0	+	0.57732000000000006	(0.57,1]	chr2	95574	36	INTRON	INTRON	SLC20A1	ENSG00000144136.11	ENST00000272542.8:ENST00000423633.5:ENST00000498224.5:ENST00000433924.5:ENST00000456264.5:ENST00000413135.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	38	2	2.07956	2.85433	3.6291	0.013114	3.02868e-4	0.0998629	0.0160895
chr15	75365698	75365798	6223185	0	-	0.38	(0.378,0.408]	chr15	594373	1	SS3_ADJ	SS3_ADJ:SS3_PROX:SS5_PROX:INTRON	MAN2C1	ENSG00000140400.18	ENST00000267978.10:ENST00000563622.5:ENST00000565683.5:ENST00000569482.5:ENST00000563441.5:ENST00000566634.5:ENST00000421803.6:ENST00000570257.6:ENST00000565784.5:ENST00000563539.5:ENST00000569355.5:ENST00000568374.5:ENST00000565534.5:ENST00000566256.5:ENST00000562071.5:ENST00000561615.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	60	2	2.51464	2.8541600000000003	3.19368	0.00684341	0.00426861	0.0748032	0.0573912
chr20	62276487	62276586	7298576	0	+	0.535354	(0.515,0.57]	chr20	742443	27	INTRON	INTRON	OSBPL2	ENSG00000130703.17	ENST00000622332.4:ENST00000439951.6:ENST00000644535.1:ENST00000358053.3:ENST00000313733.9:ENST00000645520.1:ENST00000642932.1:ENST00000642516.1:ENST00000643174.1:ENST00000644775.1:ENST00000645442.1:ENST00000646968.1:ENST00000646834.1:ENST00000643412.1:ENST00000645426.1:ENST00000644702.1:ENST00000644189.1:ENST00000643981.1:ENST00000642714.1:ENST00000618198.4:ENST00000448156.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	76	2	2.08662	2.85413	3.62164	0.00375149	5.41944e-4	0.0562562	0.0215026
chr6	26121817	26121917	3070842	0	-	0.52	(0.515,0.57]	chr6	285403	63	INTRON	INTRON	H2BC4	ENSG00000180596.8	ENST00000314332.5	protein_coding	protein_coding	protein_coding	protein_coding	6	106	2	2.31902	2.853955	3.38889	0.00493032	2.14587e-5	0.0646039	0.00377331
chr3	100715645	100715743	1467997	0	+	0.285714	(0.28,0.32]	chr3	153849	14	INTRON	INTRON	TFG	ENSG00000114354.15	ENST00000675047.1:ENST00000490574.6:ENST00000675543.1:ENST00000676308.1:ENST00000675499.1:ENST00000674699.1:ENST00000418917.7:ENST00000675553.1:ENST00000620299.5:ENST00000675246.1:ENST00000675692.1:ENST00000676276.1:ENST00000676054.1:ENST00000675890.1:ENST00000675011.1:ENST00000675586.1:ENST00000674645.1:ENST00000675958.1:ENST00000674798.1:ENST00000676010.1:ENST00000675591.1:ENST00000479672.6:ENST00000675420.1:ENST00000674615.1:ENST00000676431.1:ENST00000674758.1:ENST00000240851.9:ENST00000675243.1:ENST00000676111.1:ENST00000476228.5:ENST00000463568.6:ENST00000676395.1:ENST00000487505.6:ENST00000615993.2:ENST00000676455.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	91	2	2.74601	2.8539399999999997	2.96187	0.0114995	0.00100442	0.0889104	0.0292217
chr1	31284573	31284672	413168	0	-	0.363636	(0.35,0.378]	chr1	49797	22	INTRON	INTRON	SNRNP40	ENSG00000060688.13	ENST00000263694.9:ENST00000474025.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	96	2	1.94672	2.85384	3.76096	0.00781737	4.8203e-4	0.0788482	0.0203411
chr3	196047987	196048087	1897185	0	-	0.53	(0.515,0.57]	chr3	189884	204	INTRON	INTRON	TFRC	ENSG00000072274.13	ENST00000426789.5	protein_coding	protein_coding	protein_coding	protein_coding	15	226	2	2.69913	2.85384	3.00855	2.59422e-5	8.31213e-6	0.00422093	0.00207935
chr16	2753509	2753577	6279824	0	+	0.411765	(0.408,0.44]	chr16	600757	2	UTR5	UTR5:EXON_MRNA:INTRON	SRRM2	ENSG00000167978.17	ENST00000576924.5:ENST00000301740.13:ENST00000575009.5:ENST00000576894.5:ENST00000575701.4:ENST00000630499.2:ENST00000576415.5:ENST00000571378.5:ENST00000574340.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	89	2	2.14702	2.853795	3.56057	0.0030836	9.67143e-4	0.0510391	0.0282401
chr1	246095643	246095743	676588	0	-	0.47	(0.44,0.476]	chr1	79717	422	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000391836.3:ENST00000464398.1:ENST00000453676.5:ENST00000462422.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	59	2	2.80275	2.853575	2.9044	0.0146513	0.00132926	0.0982604	0.0335085
chr12	123395566	123395666	5242695	0	+	0.45	(0.44,0.476]	chr12	498198	3	SS5_PROX	SS5_PROX:INTRON	KMT5A	ENSG00000183955.14	ENST00000402868.8:ENST00000437519.5:ENST00000478781.6:ENST00000461103.5:ENST00000437502.1:ENST00000485469.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	59	2	2.80275	2.853575	2.9044	0.0146513	0.00132926	0.0982604	0.0335085
chr10	68964603	68964694	4443575	0	+	0.428571	(0.408,0.44]	chr10	409845	8	INTRON	INTRON	DDX21	ENSG00000165732.14	ENST00000685106.1:ENST00000687162.1:ENST00000684824.1:ENST00000354185.9:ENST00000686528.1:ENST00000690650.1:ENST00000690316.1:ENST00000620315.2:ENST00000685513.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	49	2	2.2957	2.85357	3.41144	0.0516458	0.00178336	0.176696	0.0379201
chr2	75985355	75985455	818013	0	+	0.42	(0.408,0.44]	chr2	91391	1125	INTRON	INTRON	ENSG00000287474	ENSG00000287474.1	ENST00000670606.1	lncRNA	lncRNA	lncRNA	lncRNA	2	49	2	2.2957	2.85357	3.41144	0.0516458	0.00178336	0.176696	0.0379201
chr1	6580709	6580807	5317	0	+	0.591837	(0.57,1]	chr1	1023	1	CDS	CDS:EXON_MRNA:INTRON	ZBTB48	ENSG00000204859.13	ENST00000377674.9:ENST00000319084.9:ENST00000435905.5:ENST00000488936.1	protein_coding	protein_coding	protein_coding	protein_coding	2	25	2	2.52405	2.853525	3.183	0.0263139	0.00254356	0.133676	0.0448135
chr7	65975168	65975266	3538153	0	-	0.571429	(0.57,1]	chr7	330015	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	GUSB	ENSG00000169919.17	ENST00000304895.9:ENST00000466883.5:ENST00000430730.5:ENST00000447929.5:ENST00000421103.5:ENST00000465785.5:ENST00000479038.1:ENST00000475316.5:ENST00000476486.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	25	2	2.52405	2.853525	3.183	0.0263139	0.00254356	0.133676	0.0448135
chr5	151772768	151772868	2521799	0	+	0.61	(0.57,1]	chr5	241277	1	SS5_PROX	SS5_PROX:INTRON	G3BP1	ENSG00000145907.16	ENST00000523519.5:ENST00000520578.6:ENST00000627077.2:ENST00000678976.1:ENST00000677408.1:ENST00000678070.1:ENST00000678964.1:ENST00000678925.1:ENST00000394123.7:ENST00000676978.1:ENST00000679289.1:ENST00000677493.1:ENST00000676644.1:ENST00000677757.1:ENST00000522761.6:ENST00000677909.1:ENST00000676827.1:ENST00000520177.6:ENST00000676634.1:ENST00000678854.1:ENST00000677602.1:ENST00000519832.1:ENST00000518726.5:ENST00000676911.1:ENST00000356245.8:ENST00000678646.1:ENST00000677381.1:ENST00000678904.1:ENST00000678910.1:ENST00000678101.1:ENST00000677105.1:ENST00000676813.1:ENST00000522367.6:ENST00000517947.5:ENST00000507878.7:ENST00000520006.2:ENST00000678369.1:ENST00000677433.1:ENST00000678564.1:ENST00000677252.1:ENST00000677369.1:ENST00000677284.1:ENST00000676894.1:ENST00000677923.1:ENST00000677323.1:ENST00000522666.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	43	2	2.2837	2.853465	3.42323	0.00256797	8.58388e-4	0.0466761	0.0267428
chr1	1787637	1787737	361788	0	-	0.41	(0.408,0.44]	chr1	42246	2	SS3_PROX	SS3_PROX:INTRON	GNB1	ENSG00000078369.18	ENST00000610897.4:ENST00000615252.4:ENST00000378609.9	protein_coding	protein_coding	protein_coding	protein_coding	3	59	2	2.84077	2.853445	2.86612	0.0132196	0.00157924	0.0940535	0.0366789
chr1	117624932	117625031	199114	0	+	0.414141	(0.408,0.44]	chr1	22011	10	UTR3	UTR3:EXON_MRNA	TENT5C	ENSG00000183508.5	ENST00000369448.4	protein_coding	protein_coding	protein_coding	protein_coding	3	58	2	2.60048	2.853445	3.10641	0.00555646	0.00484324	0.0648867	0.0640618
chr11	85980149	85980245	5013927	0	-	0.458333	(0.44,0.476]	chr11	472923	16	INTRON	INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000530692.5:ENST00000630913.2:ENST00000529760.5:ENST00000528398.5:ENST00000532603.5:ENST00000356360.9:ENST00000529016.5:ENST00000526961.5:ENST00000530542.1	protein_coding	protein_coding	protein_coding	protein_coding	6	88	2	1.92621	2.853335	3.78046	0.00813281	3.54249e-4	0.0810802	0.0174886
chr14	49836642	49836741	5887097	0	-	0.333333	(0.32,0.35]	chr14	558777	18	INTRON	INTRON	NEMF	ENSG00000165525.18	ENST00000298310.10:ENST00000555970.5:ENST00000557380.5:ENST00000554626.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	67	2	2.67068	2.853325	3.03597	0.00832487	0.00406276	0.0774402	0.0578984
chr21	39226943	39227039	7464650	0	-	0.364583	(0.35,0.378]	chr21	760438	14	INTRON	INTRON	BRWD1	ENSG00000185658.14	ENST00000333229.6:ENST00000342449.8:ENST00000446924.5:ENST00000380800.7:ENST00000424441.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	102	2	2.43849	2.853265	3.26804	0.00430822	2.47065e-4	0.0578073	0.0139149
chr2	144463594	144463691	1241236	0	-	0.412371	(0.408,0.44]	chr2	131710	14	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	ZEB2	ENSG00000169554.23	ENST00000636471.1:ENST00000627532.3:ENST00000638128.1:ENST00000637304.1:ENST00000636179.1:ENST00000636820.1:ENST00000419938.5:ENST00000409487.7:ENST00000636732.2:ENST00000636026.2:ENST00000675069.1:ENST00000689298.1:ENST00000539609.7:ENST00000558170.6:ENST00000303660.8:ENST00000427902.5:ENST00000637267.2:ENST00000392861.6:ENST00000431672.4:ENST00000409211.5:ENST00000465308.5:ENST00000434448.5:ENST00000472146.5:ENST00000461784.3:ENST00000476394.5:ENST00000637591.2:ENST00000479735.1:ENST00000453352.5:ENST00000435831.5:ENST00000444559.5:ENST00000630572.2:ENST00000628473.1:ENST00000484313.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	108	2	2.36252	2.8531050000000002	3.34369	0.00260554	1.46092e-4	0.0455058	0.0105174
chr2	61354480	61354579	1129380	0	-	0.444444	(0.44,0.476]	chr2	121448	34	INTRON	INTRON	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000453133.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	59	2	2.27304	2.853045	3.43305	0.0158915	0.00159668	0.109464	0.0364566
chr2	121401590	121401672	1219865	0	-	0.304878	(0.28,0.32]	chr2	129856	2	CDS	CDS:EXON_MRNA	CLASP1	ENSG00000074054.20	ENST00000263710.8:ENST00000397587.7:ENST00000541377.5:ENST00000409078.8:ENST00000455322.6:ENST00000452274.6	protein_coding	protein_coding	protein_coding	protein_coding	2	54	2	2.67975	2.853035	3.02632	0.0252505	0.0071944	0.12011	0.0756118
chr12	98652876	98652975	5199203	0	+	0.393939	(0.378,0.408]	chr12	491906	28	INTRON	INTRON	APAF1	ENSG00000120868.14	ENST00000551964.6:ENST00000359972.6:ENST00000333991.5:ENST00000357310.5:ENST00000552268.5:ENST00000550527.5:ENST00000547045.5:ENST00000549007.1	protein_coding	protein_coding	protein_coding	protein_coding	2	45	2	2.53503	2.85296	3.17089	0.0319942	0.00357279	0.13174	0.0548435
chr18	2658060	2658160	6864883	0	+	0.38	(0.378,0.408]	chr18	679940	14	INTRON	INTRON	SMCHD1	ENSG00000101596.17	ENST00000320876.11:ENST00000688342.1:ENST00000684915.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	45	2	2.53503	2.85296	3.17089	0.0319942	0.00357279	0.13174	0.0548435
chr4	168995302	168995401	2294522	0	-	0.40404	(0.378,0.408]	chr4	222054	46	INTRON	INTRON	CBR4	ENSG00000145439.12	ENST00000510042.5:ENST00000509108.1:ENST00000306193.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	45	2	2.53503	2.85296	3.17089	0.0319942	0.00357279	0.13174	0.0548435
chr3	21560191	21560291	1387510	0	+	0.48	(0.476,0.515]	chr3	145351	168	INTRON	INTRON	ZNF385D-AS1	ENSG00000225542.2	ENST00000662195.1:ENST00000412369.1	lncRNA	lncRNA	lncRNA	lncRNA	2	43	2	2.63168	2.85295	3.07422	0.0237106	0.00506023	0.118716	0.0646039
chr5	87275682	87275782	2410866	0	+	0.51	(0.476,0.515]	chr5	232377	60	INTRON	INTRON	RASA1	ENSG00000145715.15	ENST00000274376.11:ENST00000515800.6:ENST00000456692.6:ENST00000506290.1:ENST00000512763.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	43	2	2.63168	2.85295	3.07422	0.0237106	0.00506023	0.118716	0.0646039
chrX	48916982	48917081	7815680	0	-	0.494949	(0.476,0.515]	chrX	796810	12	INTRON	INTRON	PIM2	ENSG00000102096.9	ENST00000376509.4	protein_coding	protein_coding	protein_coding	protein_coding	2	43	2	2.63168	2.85295	3.07422	0.0237106	0.00506023	0.118716	0.0646039
chr9	130782153	130782253	4214546	0	+	0.51	(0.476,0.515]	chr9	386427	673	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000393293.4	protein_coding	protein_coding	protein_coding	protein_coding	9	176	2	2.54395	2.8528900000000004	3.16183	8.361e-4	1.72229e-5	0.0263691	0.00333003
chr17	35818055	35818155	6601171	0	+	0.48	(0.476,0.515]	chr17	642411	3	SS5_PROX	SS5_PROX:INTRON	TAF15	ENSG00000270647.7	ENST00000605844.6:ENST00000603777.6:ENST00000604694.2:ENST00000689923.1:ENST00000603393.6:ENST00000685897.1:ENST00000603427.6:ENST00000604879.6:ENST00000605649.6:ENST00000604360.6:ENST00000604841.5:ENST00000605197.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	101	2	2.32933	2.852825	3.37632	0.00195267	7.73927e-4	0.0400465	0.0256083
chr4	139383634	139383733	2050534	0	+	0.494949	(0.476,0.515]	chr4	203388	44	INTRON	INTRON	NAA15	ENSG00000164134.13	ENST00000296543.10:ENST00000398947.1	protein_coding	protein_coding	protein_coding	protein_coding	2	43	2	2.82673	2.85276	2.87879	0.0134403	0.00999149	0.0946278	0.0879541
chr20	35005070	35005132	7332009	0	-	0.532258	(0.515,0.57]	chr20	746881	1	INTRON	INTRON	TRPC4AP	ENSG00000100991.12	ENST00000252015.3:ENST00000451813.6	protein_coding	protein_coding	protein_coding	protein_coding	5	80	2	2.57697	2.85271	3.12845	0.00153959	4.79786e-4	0.0362709	0.0203136
chr7	105281946	105282046	3602832	0	-	0.35	(0.32,0.35]	chr7	336144	127	INTRON	INTRON	SRPK2	ENSG00000135250.17	ENST00000393651.8:ENST00000489828.5:ENST00000482897.5:ENST00000460391.5:ENST00000462282.5:ENST00000465112.5:ENST00000482862.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	50	2	2.57263	2.8527	3.13277	0.0312297	0.00458313	0.13151	0.0622676
chr3	183452164	183452251	1579703	0	+	0.505747	(0.476,0.515]	chr3	162928	2	EXON_LNCRNA	EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	LINC00888	ENSG00000240024.6	ENST00000471496.6:ENST00000686765.1:ENST00000468380.2:ENST00000487386.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	5	95	2	2.13573	2.8526249999999997	3.56952	0.0119549	4.10985e-5	0.0899583	0.00519615
chr11	13729270	13729369	4742935	0	+	0.30303	(0.28,0.32]	chr11	439228	6	UTR3	UTR3:EXON_MRNA	FAR1	ENSG00000197601.13	ENST00000354817.8:ENST00000532502.1	protein_coding	protein_coding	protein_coding	protein_coding	6	137	2	2.38564	2.8526100000000003	3.31958	0.00230684	4.5281e-4	0.0440898	0.0196892
chr8	111039511	111039608	4027597	0	-	0.618557	(0.57,1]	chr8	367869	23	INTRON	INTRON	LINC01608	ENSG00000253877.6	ENST00000669893.1	lncRNA	lncRNA	lncRNA	lncRNA	3	32	2	2.81057	2.8526	2.89463	0.00788262	0.00169295	0.076155	0.0381936
chr11	86260186	86260286	4842154	0	+	0.36	(0.35,0.378]	chr11	451765	22	INTRON	INTRON	EED	ENSG00000074266.22	ENST00000263360.11:ENST00000528180.5:ENST00000672825.1:ENST00000673233.2:ENST00000327320.8:ENST00000351625.10:ENST00000534595.1:ENST00000525244.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	65	2	2.59656	2.852595	3.10863	0.00638551	0.00470896	0.0693551	0.0631419
chr21	33459327	33459424	7440768	0	-	0.474227	(0.44,0.476]	chr21	759343	29	INTRON	INTRON	TMEM50B	ENSG00000142188.17	ENST00000420455.5:ENST00000542230.7:ENST00000441128.5:ENST00000442441.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	106	2	2.08782	2.8525	3.61718	0.00180886	7.37432e-4	0.039365700000000003	0.02495
chr2	202265803	202265872	984909	0	+	0.652174	(0.57,1]	chr2	105699	2	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	NOP58	ENSG00000055044.11	ENST00000488403.5:ENST00000426814.5:ENST00000264279.10:ENST00000472050.5:ENST00000492740.5:ENST00000467734.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	20	166	2	2.2305	2.8524950000000002	3.47449	6.02948e-5	7.65304e-8	0.00640459	1.17848e-4
chr8	6757681	6757779	3695505	0	+	0.326531	(0.32,0.35]	chr8	342882	4	UTR3	UTR3:EXON_MRNA	AGPAT5	ENSG00000155189.12	ENST00000285518.11:ENST00000523234.5:ENST00000518327.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	50	2	2.79707	2.852465	2.90786	0.0170923	0.00993008	0.104099	0.0877296
chr11	86032310	86032410	5014475	0	-	0.48	(0.476,0.515]	chr11	473022	3	INTRON	INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000630913.2:ENST00000528398.5:ENST00000356360.9:ENST00000534412.5:ENST00000531558.1:ENST00000531930.5:ENST00000532041.5:ENST00000525162.5:ENST00000528256.1:ENST00000528411.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	70	2	1.88582	2.85238	3.81894	0.0273268	1.96038e-4	0.123904	0.0122528
chr17	17811382	17811475	6737333	0	-	0.322581	(0.32,0.35]	chr17	661093	5	UTR3	UTR3:EXON_MRNA	SREBF1	ENSG00000072310.18	ENST00000485080.6:ENST00000261646.11:ENST00000395757.6:ENST00000578469.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	68	2	2.42352	2.852295	3.28107	0.0122807	0.00262488	0.091087	0.0470772
chr11	31506562	31506662	4939211	0	-	0.27	[0,0.28]	chr11	462601	180	INTRON	INTRON	IMMP1L	ENSG00000148950.11	ENST00000532287.6:ENST00000534812.5:ENST00000526776.5:ENST00000278200.5:ENST00000648582.1:ENST00000533642.1:ENST00000527184.5:ENST00000528161.5:ENST00000532624.5:ENST00000529749.5:ENST00000530023.5:ENST00000531693.1:ENST00000532668.1:ENST00000533921.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	62	2	2.44242	2.8522600000000002	3.2621000000000002	0.0491024	0.00367113	0.155269	0.056059199999999997
chr11	31488096	31488196	4939025	0	-	0.35	(0.32,0.35]	chr11	462597	100	INTRON	INTRON	IMMP1L	ENSG00000148950.11	ENST00000532287.6:ENST00000534812.5:ENST00000526776.5:ENST00000278200.5:ENST00000648582.1:ENST00000533642.1:ENST00000527184.5:ENST00000528161.5:ENST00000532624.5:ENST00000529749.5:ENST00000530023.5:ENST00000531693.1:ENST00000532668.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	103	2	2.15523	2.852245	3.54926	0.00338289	0.00133843	0.0534907	0.0335491
chr17	32357902	32358002	6598058	0	+	0.52	(0.515,0.57]	chr17	641893	56	INTRON	INTRON	ZNF207	ENSG00000010244.19	ENST00000321233.10:ENST00000394673.6:ENST00000394670.9:ENST00000579634.5:ENST00000580759.5:ENST00000342555.10:ENST00000577908.5:ENST00000394679.9:ENST00000582165.1:ENST00000577324.1:ENST00000578918.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	82	2	2.6325	2.8522299999999996	3.07196	0.00439001	1.07034e-4	0.0585064	0.00877029
chr19	1853182	1853280	7113841	0	-	0.571429	(0.57,1]	chr19	714897	9	UTR3	UTR3:EXON_MRNA:INTRON	KLF16	ENSG00000129911.9	ENST00000250916.6:ENST00000541015.5:ENST00000617223.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	96	2	2.56698	2.85217	3.13736	2.40979e-4	4.07997e-6	0.0136674	0.00146291
chr3	167733713	167733813	1854040	0	-	0.31	(0.28,0.32]	chr3	186331	1	SS5_PROX	SS5_PROX:INTRON	PDCD10	ENSG00000114209.15	ENST00000392750.7:ENST00000473645.6:ENST00000497056.6:ENST00000461494.5:ENST00000470131.5:ENST00000475915.6:ENST00000487947.6:ENST00000471885.5:ENST00000462725.6:ENST00000492139.5:ENST00000483451.5:ENST00000494502.6:ENST00000464360.5:ENST00000481136.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	54	2	2.62686	2.85215	3.07744	0.0289217	0.00604536	0.1274	0.0700813
chr6	111274610	111274710	2939932	0	+	0.29	(0.28,0.32]	chr6	276923	76	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	MFSD4B	ENSG00000173214.7	ENST00000671876.2:ENST00000672750.1:ENST00000672191.1:ENST00000671883.1:ENST00000673446.1:ENST00000444259.2:ENST00000653951.2:ENST00000673245.1:ENST00000673164.1:ENST00000658925.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	54	2	2.62686	2.85215	3.07744	0.0289217	0.00604536	0.1274	0.0700813
chr19	52557429	52557527	7095562	0	+	0.510204	(0.476,0.515]	chr19	711373	10	INTRON	INTRON	ZNF808:ZNF701	ENSG00000198482.14:ENSG00000167562.14	ENST00000487863.5:ENST00000478039.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	2	44	2	2.65268	2.8521	3.05152	0.0201975	0.0064848	0.121243	0.0699952
chr8	15762117	15762216	3706373	0	+	0.282828	(0.28,0.32]	chr8	343623	39	INTRON	INTRON	TUSC3	ENSG00000104723.21	ENST00000382020.8:ENST00000515859.5:ENST00000506802.5:ENST00000503731.6:ENST00000510836.5:ENST00000508446.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	54	2	2.73077	2.85205	2.97333	0.0220748	0.00857834	0.115395	0.083729
chr11	88325680	88325779	5015935	0	-	0.343434	(0.32,0.35]	chr11	473121	50	UTR3	UTR3:EXON_MRNA:INTRON	CTSC	ENSG00000109861.17	ENST00000678554.1:ENST00000679224.1:ENST00000677661.1:ENST00000678506.1:ENST00000676612.1:ENST00000677802.1:ENST00000227266.10:ENST00000678395.1:ENST00000533897.2:ENST00000677208.1:ENST00000678520.1:ENST00000678464.1:ENST00000678915.1:ENST00000527018.6:ENST00000679199.1:ENST00000524463.6:ENST00000679032.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	51	2	2.71269	2.8519699999999997	2.99125	0.0181461	0.00958447	0.114853	0.0820838
chr20	50600582	50600681	7354517	0	-	0.464646	(0.44,0.476]	chr20	750001	25	INTRON	INTRON	RIPOR3	ENSG00000042062.13	ENST00000327979.8:ENST00000045083.6:ENST00000462493.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	13	201	2	2.07557	2.8519699999999997	3.62837	0.00123202	3.96523e-6	0.0321968	0.00131744
chr17	81858300	81858397	6850097	0	-	0.515464	(0.515,0.57]	chr17	678356	28	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	P4HB	ENSG00000185624.16	ENST00000680083.1:ENST00000680416.1:ENST00000575069.6:ENST00000681030.1:ENST00000680884.1:ENST00000681161.1:ENST00000681515.1:ENST00000679470.1:ENST00000571617.2:ENST00000679688.1:ENST00000680226.1:ENST00000680400.1:ENST00000574914.2:ENST00000331483.9:ENST00000680914.1:ENST00000680593.1:ENST00000681420.1:ENST00000681693.1:ENST00000576390.6:ENST00000681566.1:ENST00000680076.1:ENST00000680105.1:ENST00000681872.1:ENST00000466567.3:ENST00000679396.1:ENST00000415593.6:ENST00000679889.1:ENST00000680719.1:ENST00000680191.1:ENST00000680799.1:ENST00000680208.1:ENST00000679439.1:ENST00000439918.7:ENST00000472244.6:ENST00000681031.1:ENST00000680846.1:ENST00000681068.1:ENST00000679366.1:ENST00000681020.1:ENST00000681485.1:ENST00000679628.1:ENST00000679455.1:ENST00000680259.1:ENST00000680559.1:ENST00000680909.1:ENST00000681760.1:ENST00000681933.1:ENST00000570907.6:ENST00000680732.1:ENST00000680838.1:ENST00000680847.1:ENST00000574007.6:ENST00000573778.7:ENST00000576380.6:ENST00000576052.2:ENST00000471535.2:ENST00000576541.2:ENST00000467086.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	101	2	2.31075	2.8519550000000002	3.39316	0.00124389	1.20237e-4	0.0328153	0.00992311
chr11	70416587	70416663	4821803	0	+	0.486842	(0.476,0.515]	chr11	449629	2	SS3_PROX	SS3_PROX:INTRON	CTTN	ENSG00000085733.16	ENST00000346329.7:ENST00000301843.13:ENST00000376561.7:ENST00000415461.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	103	2	1.67133	2.85195	4.03257	0.012282	9.96835e-5	0.0970106	0.00903184
chr19	10740530	10740630	7013994	0	+	0.52	(0.515,0.57]	chr19	696920	215	INTRON	INTRON	DNM2	ENSG00000079805.19	ENST00000683738.1:ENST00000682285.1:ENST00000682524.1:ENST00000355667.11:ENST00000389253.9:ENST00000585892.5:ENST00000359692.10:ENST00000408974.8:ENST00000586939.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	96	2	2.57713	2.85195	3.12677	0.00176427	7.69212e-5	0.0376652	0.00735438
chr16	89529946	89530038	6420568	0	+	0.543478	(0.515,0.57]	chr16	616241	5	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	SPG7	ENSG00000197912.16	ENST00000647079.1:ENST00000646303.1:ENST00000643649.1:ENST00000643307.1:ENST00000566371.6:ENST00000644498.1:ENST00000645897.1:ENST00000643668.1:ENST00000644225.1:ENST00000645818.2:ENST00000645977.1:ENST00000645063.1:ENST00000646263.1:ENST00000643724.1:ENST00000644781.1:ENST00000644901.1:ENST00000645042.1:ENST00000646531.1:ENST00000646930.1:ENST00000642436.1:ENST00000644210.1:ENST00000564047.2:ENST00000646589.1:ENST00000268704.7:ENST00000646826.1:ENST00000646716.1:ENST00000643345.1:ENST00000341316.6:ENST00000645533.1:ENST00000646958.1:ENST00000642371.1:ENST00000643105.1:ENST00000645354.1:ENST00000642334.1:ENST00000647227.1:ENST00000646445.1:ENST00000564409.2:ENST00000643954.1:ENST00000646399.1:ENST00000644671.1:ENST00000643178.1:ENST00000644748.1:ENST00000643496.1:ENST00000647032.1:ENST00000644751.1:ENST00000642427.1:ENST00000643370.1:ENST00000645886.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	80	2	2.57713	2.85193	3.12673	0.00176427	3.95089e-4	0.0376652	0.0178567
chr14	103694134	103694219	5828319	0	+	0.670588	(0.57,1]	chr14	553145	1	INTRON	INTRON	KLC1	ENSG00000126214.22	ENST00000348520.10:ENST00000334553.11:ENST00000555836.5:ENST00000452929.6:ENST00000554280.5:ENST00000557450.5:ENST00000538504.6:ENST00000557686.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	52	2	1.75814	2.851925	3.94571	0.0104317	4.59736e-5	0.0855102	0.00552588
chr3	138772013	138772113	1830871	0	-	0.28	[0,0.28]	chr3	184056	15	INTRON	INTRON	PIK3CB	ENSG00000051382.9	ENST00000674063.1:ENST00000477593.5:ENST00000462898.5:ENST00000483968.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	62	2	2.80396	2.85189	2.89982	0.0161429	0.0158893	0.109464	0.101453
chr4	169009989	169010089	2294681	0	-	0.57	(0.515,0.57]	chr4	222092	1	CDS_START	CDS_START:CDS:EXON_MRNA	CBR4	ENSG00000145439.12	ENST00000510042.5:ENST00000306193.8:ENST00000504480.5:ENST00000504561.1:ENST00000506808.1:ENST00000507752.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	121	2	2.65244	2.85187	3.0513	1.82258e-4	1.58148e-4	0.0117546	0.0114628
chr4	48849846	48849946	1958408	0	+	0.24	[0,0.28]	chr4	196240	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	OCIAD1	ENSG00000109180.15	ENST00000504654.5:ENST00000509122.5:ENST00000505922.6:ENST00000514981.5:ENST00000512981.5:ENST00000507210.5:ENST00000396448.6:ENST00000512236.5:ENST00000381473.7:ENST00000511102.5:ENST00000264312.12:ENST00000444354.6:ENST00000509963.5:ENST00000509246.5:ENST00000506801.5:ENST00000503016.5:ENST00000510824.5:ENST00000425583.6:ENST00000508293.5:ENST00000513391.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	151	2	1.94385	2.851865	3.75988	0.00550323	9.5295e-4	0.0672816	0.0282335
chr7	101819678	101819778	3366385	0	+	0.36	(0.35,0.378]	chr7	315215	3	INTRON	INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000497815.5:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000607092.1:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000558469.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	85	2	2.82526	2.851805	2.87835	0.00269503	0.00160563	0.0466389	0.0367961
chr19	58388594	58388690	7107594	0	+	0.40625	(0.378,0.408]	chr19	713446	1	SS5_PROX	SS5_PROX:INTRON	RPS5	ENSG00000083845.9	ENST00000601521.5:ENST00000596314.5:ENST00000598098.5:ENST00000196551.8:ENST00000598495.5:ENST00000598807.1:ENST00000596046.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	216	2	2.63629	2.8516899999999996	3.06709	0.001315	1.28224e-5	0.0333932	0.00283883
chr16	16525009	16525109	6311112	0	+	0.59	(0.57,1]	chr16	604098	250	INTRON	INTRON	ENSG00000260126	ENSG00000260126.2	ENST00000567465.2	lncRNA	lncRNA	lncRNA	lncRNA	2	24	2	2.78409	2.85149	2.91889	0.0116033	0.00719009	0.0889104	0.0756118
chr15	56946782	56946882	6032393	0	+	0.41	(0.408,0.44]	chr15	574663	253	INTRON	INTRON	TCF12	ENSG00000140262.18	ENST00000438423.6:ENST00000267811.9:ENST00000333725.10:ENST00000560190.5:ENST00000559609.5:ENST00000558908.5:ENST00000557843.5:ENST00000557947.5:ENST00000561152.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	94	2	2.51198	2.851315	3.19065	0.00288187	3.2984e-4	0.0475859	0.0161352
chr22	28736759	28736859	7573464	0	-	0.55	(0.515,0.57]	chr22	774426	1	SS5_PROX	SS5_PROX:INTRON	CHEK2	ENSG00000183765.23	ENST00000416671.5:ENST00000348295.7:ENST00000404276.6:ENST00000425190.7:ENST00000649563.1:ENST00000405598.5:ENST00000382580.6:ENST00000650281.1:ENST00000433028.6:ENST00000439200.5:ENST00000650233.1:ENST00000398017.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	67	2	2.78208	2.851265	2.92045	0.00209264	0.00128922	0.0424943	0.0328334
chr9	131486778	131486874	4217929	0	+	0.354167	(0.35,0.378]	chr9	386861	2	SS3_PROX	SS3_PROX:INTRON	PRRC2B	ENSG00000288701.1	ENST00000684596.1:ENST00000683519.1:ENST00000682501.1:ENST00000682662.1	protein_coding	protein_coding	protein_coding	protein_coding	3	63	2	2.44701	2.8512500000000003	3.25549	0.00900997	0.00363602	0.0851009	0.0535085
chr18	55908740	55908840	6910182	0	+	0.31	(0.28,0.32]	chr18	684213	149	INTRON	INTRON	ENSG00000267327	ENSG00000267327.2	ENST00000589440.1	lncRNA	lncRNA	lncRNA	lncRNA	2	55	2	2.39347	2.8512000000000004	3.30893	0.0504457	0.00260504	0.156383	0.0470772
chr1	75751489	75751587	144258	0	+	0.510204	(0.476,0.515]	chr1	16290	2	INTRON	INTRON	ACADM	ENSG00000117054.15	ENST00000679530.1:ENST00000680582.1:ENST00000473018.3:ENST00000680694.1:ENST00000541113.6:ENST00000681063.1:ENST00000681913.1:ENST00000680613.1:ENST00000680805.1:ENST00000681278.1:ENST00000681209.1:ENST00000680691.1:ENST00000681037.1:ENST00000679976.1:ENST00000680749.1:ENST00000681430.1:ENST00000681289.1:ENST00000680964.1:ENST00000679615.1:ENST00000681446.1:ENST00000681680.1:ENST00000681621.1:ENST00000681930.1:ENST00000679509.1:ENST00000680798.1:ENST00000680517.1:ENST00000681361.1:ENST00000681790.1:ENST00000681837.1:ENST00000680743.1:ENST00000681616.1:ENST00000680948.1:ENST00000681916.1:ENST00000526196.5:ENST00000526129.5:ENST00000679709.1:ENST00000370841.9:ENST00000370834.9:ENST00000680844.1:ENST00000681720.1:ENST00000681548.1:ENST00000681450.1:ENST00000679687.1:ENST00000680662.1:ENST00000679704.1:ENST00000525808.5:ENST00000534334.5:ENST00000420607.6:ENST00000680166.1:ENST00000681730.1:ENST00000529059.5:ENST00000532207.6:ENST00000528016.1:ENST00000680315.1:ENST00000481374.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	58	2	2.45598	2.85114	3.2463	0.00945755	0.00262374	0.0817766	0.0470772
chr11	64318586	64318686	4803010	0	+	0.48	(0.476,0.515]	chr11	445669	2	SS5_PROX	SS5_PROX:INTRON	PRDX5	ENSG00000126432.14	ENST00000265462.9:ENST00000347941.4:ENST00000352435.8	protein_coding	protein_coding	protein_coding	protein_coding	4	77	2	2.66112	2.851045	3.04097	0.0044598	7.0601e-4	0.0592169	0.0241881
chr1	180716991	180717091	270446	0	+	0.47	(0.44,0.476]	chr1	31620	342	INTRON	INTRON	XPR1	ENSG00000143324.14	ENST00000367590.9:ENST00000367589.3	protein_coding	protein_coding	protein_coding	protein_coding	3	59	2	2.55649	2.8510400000000002	3.14559	0.00670547	0.00384923	0.0707084	0.0562562
chr17	7573316	7573399	6553789	0	+	0.578313	(0.57,1]	chr17	636696	2	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	EIF4A1	ENSG00000161960.16	ENST00000584054.5:ENST00000293831.13:ENST00000396527.7:ENST00000578495.5:ENST00000578754.5:ENST00000582169.5:ENST00000578476.5:ENST00000584712.5:ENST00000580461.5:ENST00000580886.5:ENST00000579139.1:ENST00000581544.5:ENST00000584901.5:ENST00000583802.5:ENST00000585024.5:ENST00000582848.5:ENST00000583899.5:ENST00000582213.5:ENST00000579085.5:ENST00000577269.5:ENST00000584784.5:ENST00000582746.5:ENST00000584860.5:ENST00000581770.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	77	2	2.32017	2.85102	3.38187	0.00488159	1.93556e-6	0.0640618	9.48354e-4
chr11	61431273	61431372	4796529	0	+	0.515152	(0.476,0.515]	chr11	444286	12	EXON_MRNA	EXON_MRNA:INTRON	ENSG00000256591:SDHAF2	ENSG00000256591.5:ENSG00000167985.7	ENST00000544025.5:ENST00000542794.5:ENST00000541135.5:ENST00000542074.1:ENST00000536670.5:ENST00000301761.7:ENST00000534878.5:ENST00000623232.1:ENST00000538594.5:ENST00000537782.5:ENST00000359614.9:ENST00000544801.5:ENST00000536250.1:ENST00000544880.1:ENST00000543265.1:ENST00000543044.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:TEC:processed_transcript	6	88	2	1.80755	2.85094	3.89433	0.0131326	1.98377e-4	0.0999551	0.0129156
chr14	103464257	103464357	5826435	0	+	0.33	(0.32,0.35]	chr14	552873	14	INTRON	INTRON	MARK3	ENSG00000075413.19	ENST00000678179.1:ENST00000676838.1:ENST00000677348.1:ENST00000677404.1:ENST00000676694.1:ENST00000676938.1:ENST00000678619.1:ENST00000676897.1:ENST00000677214.1:ENST00000677942.1:ENST00000676830.1:ENST00000678999.1:ENST00000677228.1:ENST00000556744.2:ENST00000677104.1:ENST00000679330.1:ENST00000560417.6:ENST00000440884.7:ENST00000676475.1:ENST00000677035.1:ENST00000678022.1:ENST00000677560.1:ENST00000561314.6:ENST00000429436.7:ENST00000677118.1:ENST00000676564.1:ENST00000678169.1:ENST00000678175.1:ENST00000678897.1:ENST00000678278.1:ENST00000676645.1:ENST00000677829.1:ENST00000678302.1:ENST00000677133.1:ENST00000561164.2:ENST00000558223.6:ENST00000678207.1:ENST00000677360.1:ENST00000676905.1:ENST00000678343.1:ENST00000677347.1:ENST00000678071.1:ENST00000677432.1:ENST00000678237.1:ENST00000677604.1:ENST00000676518.1:ENST00000677051.1:ENST00000677857.1:ENST00000677869.1:ENST00000678423.1:ENST00000560603.6:ENST00000416682.6:ENST00000303622.13:ENST00000216288.11:ENST00000679105.1:ENST00000553942.5:ENST00000335102.9:ENST00000678091.1:ENST00000561071.5:ENST00000558698.5:ENST00000559268.5:ENST00000676745.1:ENST00000558611.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	67	2	2.71053	2.8508899999999997	2.99125	0.00958447	0.00346747	0.0820838	0.0539802
chr11	62882736	62882807	4799610	0	+	0.422535	(0.408,0.44]	chr11	444824	2	CDS	CDS:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SLC3A2	ENSG00000168003.18	ENST00000680729.1:ENST00000680002.1:ENST00000681467.1:ENST00000377890.6:ENST00000538084.2:ENST00000681569.1:ENST00000680725.1:ENST00000377891.6:ENST00000377889.6:ENST00000681215.1:ENST00000535296.5:ENST00000680631.1:ENST00000544377.2:ENST00000680610.1:ENST00000680297.1:ENST00000680134.1:ENST00000681232.1:ENST00000681657.1:ENST00000541425.6:ENST00000679908.1:ENST00000681563.1:ENST00000338663.12:ENST00000680654.1:ENST00000681107.1:ENST00000541649.2:ENST00000538682.6:ENST00000536981.6:ENST00000539891.6:ENST00000679594.1:ENST00000535768.2:ENST00000537508.6:ENST00000537839.5:ENST00000546253.5:ENST00000457660.6:ENST00000546312.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	80	2	2.58624	2.850885	3.11553	0.0273686	1.01454e-4	0.123904	0.00850967
chr7	72952295	72952395	3553779	0	-	0.37	(0.35,0.378]	chr7	330617	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	NSUN5P2	ENSG00000106133.18	ENST00000602348.5:ENST00000444583.6:ENST00000388955.8:ENST00000485741.6:ENST00000457352.4	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	7	140	2	2.51529	2.85086	3.18643	0.00151148	7.78029e-5	0.0352794	0.00735438
chr7	124898317	124898374	3633461	0	-	0.368421	(0.35,0.378]	chr7	337725	2	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	POT1	ENSG00000128513.16	ENST00000430927.6:ENST00000357628.8:ENST00000393329.5:ENST00000653274.1:ENST00000661898.1:ENST00000664330.1:ENST00000657892.1:ENST00000662531.1:ENST00000653241.1:ENST00000653892.1:ENST00000664366.1:ENST00000655761.1:ENST00000668382.1:ENST00000654766.1:ENST00000657333.1:ENST00000653819.1:ENST00000609106.5:ENST00000446993.6:ENST00000429326.6:ENST00000609702.5:ENST00000669195.1:ENST00000608437.5:ENST00000608261.5:ENST00000461288.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	47	2	2.83709	2.8508	2.86451	0.01435	0.0109111	0.0966737	0.0923273
chr11	17116315	17116411	4928142	0	-	0.375	(0.35,0.378]	chr11	461388	15	INTRON	INTRON	PIK3C2A	ENSG00000011405.14	ENST00000531428.1:ENST00000265970.11:ENST00000691414.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	49	2	2.24535	2.8507800000000003	3.45621	0.0647516	0.0011842	0.179192	0.031662
chr8	42541054	42541153	3942580	0	-	0.59596	(0.57,1]	chr8	361342	1	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	SLC20A2	ENSG00000168575.10	ENST00000342228.7:ENST00000520179.5:ENST00000518384.1:ENST00000524237.1:ENST00000523340.1:ENST00000521455.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	56	2	2.29448	2.85077	3.40706	0.00237038	5.92509e-5	0.0438057	0.00631599
chrX	136878751	136878833	7897673	0	-	0.292683	(0.28,0.32]	chrX	804175	3	SS5_PROX	SS5_PROX:INTRON	RBMX	ENSG00000147274.14	ENST00000431446.7:ENST00000568578.5:ENST00000419968.6:ENST00000464781.5:ENST00000320676.11:ENST00000562646.5:ENST00000565438.1:ENST00000567262.5:ENST00000563370.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	55	2	2.73945	2.85066	2.96187	0.017681	0.0114995	0.11319	0.0889104
chr1	186351143	186351229	604165	0	-	0.313953	(0.28,0.32]	chr1	72099	4	SS5_PROX	SS5_PROX:INTRON	TPR	ENSG00000047410.14	ENST00000367478.9	protein_coding	protein_coding	protein_coding	protein_coding	4	99	2	2.50462	2.85059	3.19656	0.0102735	4.54565e-4	0.0850389	0.0192381
chr7	151493804	151493903	3674664	0	-	0.292929	(0.28,0.32]	chr7	341201	24	INTRON	INTRON	RHEB	ENSG00000106615.10	ENST00000262187.10:ENST00000472642.5:ENST00000478470.5:ENST00000496004.5:ENST00000470370.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	100	2	2.40458	2.850575	3.29657	0.0141047	2.79563e-4	0.0959618	0.0148832
chr4	123112687	123112787	2037541	0	+	0.36	(0.35,0.378]	chr4	202384	105	INTRON	INTRON	SPATA5	ENSG00000145375.9	ENST00000675612.1:ENST00000274008.5	protein_coding	protein_coding	protein_coding	protein_coding	2	50	2	2.48657	2.850565	3.21456	0.032907	0.00420814	0.145164	0.0572185
chr13	112550468	112550568	5651334	0	-	0.56	(0.515,0.57]	chr13	538494	19	INTRON	INTRON	TUBGCP3	ENSG00000126216.15	ENST00000261965.8:ENST00000649778.1:ENST00000375669.7:ENST00000464139.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	50	2	2.32967	2.85046	3.37125	0.0133671	0.00136343	0.0946278	0.0339121
chr15	101293983	101294074	6270038	0	-	0.549451	(0.515,0.57]	chr15	598034	2	INTRON	INTRON	SNRPA1	ENSG00000131876.18	ENST00000254193.11:ENST00000558036.5:ENST00000559309.5:ENST00000394082.8:ENST00000540017.6:ENST00000560496.5:ENST00000560383.5:ENST00000558059.5:ENST00000560987.5:ENST00000560856.5:ENST00000558020.1:ENST00000561187.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	50	2	2.32967	2.85046	3.37125	0.0133671	0.00136343	0.0946278	0.0339121
chr5	32146077	32146177	2597233	0	-	0.54	(0.515,0.57]	chr5	246744	18	INTRON	INTRON	GOLPH3	ENSG00000113384.14	ENST00000265070.7:ENST00000503610.5:ENST00000512668.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	50	2	2.32967	2.85046	3.37125	0.0133671	0.00136343	0.0946278	0.0339121
chr4	1948818	1948915	1911364	0	+	0.371134	(0.35,0.378]	chr4	191793	1	INTRON	INTRON	NSD2	ENSG00000109685.19	ENST00000508803.6:ENST00000382891.9:ENST00000353275.9:ENST00000382892.6:ENST00000382895.7:ENST00000312087.10:ENST00000677559.1:ENST00000511904.1:ENST00000513726.5:ENST00000482415.6:ENST00000514329.5:ENST00000502425.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	77	2	2.20121	2.85044	3.49967	0.0104157	9.80974e-4	0.085482	0.0287765
chr2	97800698	97800797	1184812	0	-	0.414141	(0.408,0.44]	chr2	127184	28	INTRON	INTRON	TMEM131	ENSG00000075568.17	ENST00000186436.10	protein_coding	protein_coding	protein_coding	protein_coding	3	58	2	2.69457	2.85026	3.00595	0.00781452	0.00331036	0.0759016	0.0527031
chrX	13347610	13347709	7622432	0	+	0.494949	(0.476,0.515]	chrX	780353	59	INTRON	INTRON	LINC01203	ENSG00000226985.7	ENST00000669963.1:ENST00000661545.1:ENST00000659526.1:ENST00000656410.1:ENST00000661104.1:ENST00000456091.2:ENST00000655502.1:ENST00000671651.1:ENST00000656979.1:ENST00000656271.1:ENST00000661629.1:ENST00000661464.1:ENST00000668192.1:ENST00000665887.1:ENST00000659191.1:ENST00000667868.1:ENST00000653729.1:ENST00000656111.1	lncRNA	lncRNA	lncRNA	lncRNA	6	106	2	2.31424	2.85025	3.38626	0.00308038	1.1754e-4	0.0496438	0.00930356
chr17	50734160	50734260	6627114	0	+	0.44	(0.408,0.44]	chr17	647183	98	INTRON	INTRON	LUC7L3	ENSG00000108848.16	ENST00000625349.2:ENST00000508045.5:ENST00000508218.5:ENST00000509335.5:ENST00000506686.5:ENST00000393227.6:ENST00000504563.6:ENST00000505658.6:ENST00000240304.5:ENST00000508482.5:ENST00000505619.5:ENST00000510984.5:ENST00000507200.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	60	2	1.94273	2.85014	3.75755	0.0456237	2.62433e-4	0.149888	0.0143317
chr2	96637285	96637366	1181192	0	-	0.444444	(0.44,0.476]	chr2	126533	1	SS3_PROX	SS3_PROX:INTRON	KANSL3	ENSG00000114982.19	ENST00000354204.10:ENST00000431828.6:ENST00000487070.5:ENST00000420155.5:ENST00000670907.1:ENST00000666923.1:ENST00000597150.5:ENST00000444759.5:ENST00000452268.5:ENST00000448075.1:ENST00000416138.1:ENST00000418735.1:ENST00000475820.1:ENST00000478492.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	128	2	2.61031	2.850105	3.0899	8.11387e-4	1.17872e-4	0.0263656	0.00930884
chr19	5056347	5056446	7004297	0	+	0.414141	(0.408,0.44]	chr19	694835	83	INTRON	INTRON	KDM4B	ENSG00000127663.15	ENST00000159111.9:ENST00000611640.4:ENST00000381759.8:ENST00000536461.5:ENST00000592175.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	58	2	2.49983	2.850085	3.20034	0.00713527	0.00398025	0.0756118	0.0549214
chr10	1049741	1049841	4379329	0	+	0.55	(0.515,0.57]	chr10	403902	1	SS5_PROX	SS5_PROX:INTRON	WDR37	ENSG00000047056.17	ENST00000358220.5	protein_coding	protein_coding	protein_coding	protein_coding	3	50	2	2.39351	2.85008	3.30665	0.0100431	0.00213226	0.0881096	0.041756
chr2	97926030	97926130	1186096	0	-	0.54	(0.515,0.57]	chr2	127308	131	INTRON	INTRON	TMEM131	ENSG00000075568.17	ENST00000186436.10:ENST00000418629.6:ENST00000489507.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	50	2	2.39351	2.85008	3.30665	0.0100431	0.00213226	0.0881096	0.041756
chrX	149955126	149955225	7730439	0	+	0.444444	(0.44,0.476]	chrX	791129	22	INTRON	INTRON	EOLA2-DT	ENSG00000235703.7	ENST00000670799.1:ENST00000654890.1:ENST00000449111.5:ENST00000444489.5:ENST00000669126.1:ENST00000452864.2:ENST00000671125.1	lncRNA	lncRNA	lncRNA	lncRNA	3	58	2	2.39003	2.8500699999999997	3.31011	0.0106488	0.00259023	0.0915714	0.0452934
chr2	87801092	87801192	1172948	0	-	0.55	(0.515,0.57]	chr2	125237	4	SS3_PROX	SS3_PROX:INTRON	RGPD2	ENSG00000185304.16	ENST00000398146.5	protein_coding	protein_coding	protein_coding	protein_coding	9	132	2	2.60195	2.850015	3.09808	1.29924e-4	1.21563e-4	0.00992813	0.00983066
chr17	32350652	32350752	6597978	0	+	0.45	(0.44,0.476]	chr17	641876	3	SS5_PROX	SS5_PROX:INTRON	ZNF207	ENSG00000010244.19	ENST00000321233.10:ENST00000394673.6:ENST00000394670.9:ENST00000579634.5:ENST00000580759.5:ENST00000342555.10:ENST00000577908.5:ENST00000394679.9:ENST00000582165.1:ENST00000577324.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	69	2	2.34775	2.85001	3.35227	0.00466011	0.0022005699999999998	0.0629753	0.0417893
chr1	179988654	179988751	267780	0	+	0.319588	(0.28,0.32]	chr1	31313	10	INTRON	INTRON	CEP350	ENSG00000135837.16	ENST00000491495.2:ENST00000367607.8:ENST00000357434.2	protein_coding	protein_coding	protein_coding	protein_coding	4	90	2	2.69602	2.849985	3.00395	0.0101329	0.00126382	0.0850389	0.0329641
chr8	22613636	22613718	3714448	0	+	0.378049	(0.378,0.408]	chr8	345011	1	SS3_PROX	SS3_PROX:INTRON	CCAR2	ENSG00000158941.17	ENST00000308511.9:ENST00000389279.7:ENST00000520861.5:ENST00000522599.5	protein_coding	protein_coding	protein_coding	protein_coding	3	33	2	1.59317	2.84989	4.10661	0.0603812	0.0399023	0.19151	0.143072
chr1	23287188	23287288	399168	0	-	0.52	(0.515,0.57]	chr1	47822	60	EXON_LNCRNA	EXON_LNCRNA	LINC01355	ENSG00000261326.4	ENST00000655082.1:ENST00000666981.1	lncRNA	lncRNA	lncRNA	lncRNA	10	154	2	2.58971	2.849785	3.10986	3.3987e-4	8.98023e-6	0.0170719	0.00215957
chr20	49279892	49279984	7284617	0	+	0.467391	(0.44,0.476]	chr20	741054	3	INTRON	INTRON	ZFAS1	ENSG00000177410.13	ENST00000371743.8:ENST00000417721.5:ENST00000441722.5:ENST00000450535.5:ENST00000458653.5:ENST00000428008.6:ENST00000620594.2:ENST00000652916.1:ENST00000326677.9:ENST00000623640.1	lncRNA	lncRNA	lncRNA	lncRNA	13	251	2	2.52309	2.84977	3.17645	2.58607e-4	4.95116e-6	0.014326	0.0016389900000000001
chr12	42186170	42186270	5313085	0	-	0.47	(0.44,0.476]	chr12	505317	136	INTRON	INTRON	YAF2	ENSG00000015153.15	ENST00000534854.7:ENST00000327791.8:ENST00000380790.4:ENST00000552109.5:ENST00000547622.5:ENST00000547351.5:ENST00000551268.5:ENST00000551528.5:ENST00000548661.5:ENST00000546726.5:ENST00000546972.5:ENST00000547724.1:ENST00000552928.5:ENST00000548917.1:ENST00000547254.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	43	2	2.67572	2.84969	3.02366	0.0212064	0.00603307	0.113017	0.0700813
chr2	26796271	26796370	715856	0	+	0.444444	(0.44,0.476]	chr2	82684	18	INTRON	INTRON	CENPA	ENSG00000115163.15	ENST00000460030.1	protein_coding	processed_transcript	protein_coding	processed_transcript	2	43	2	2.67572	2.84969	3.02366	0.0212064	0.00603307	0.113017	0.0700813
chr1	193220145	193220245	285607	0	+	0.41	(0.408,0.44]	chr1	32840	73	INTRON	INTRON	CDC73	ENSG00000134371.14	ENST00000649895.1:ENST00000643006.1:ENST00000367435.5:ENST00000650197.1:ENST00000648071.1:ENST00000635846.1:ENST00000649613.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	44	2	2.43988	2.84968	3.25948	0.0398236	0.00246454	0.143072	0.0459102
chr5	177038226	177038326	2553086	0	+	0.44	(0.408,0.44]	chr5	243771	146	INTRON	INTRON	ZNF346	ENSG00000113761.12	ENST00000512315.5:ENST00000358149.8:ENST00000506693.5:ENST00000503425.5:ENST00000508155.5:ENST00000511834.5:ENST00000503039.1:ENST00000513587.5:ENST00000510933.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	44	2	2.43988	2.84968	3.25948	0.0398236	0.00246454	0.143072	0.0459102
chr10	74345540	74345640	4457716	0	+	0.46	(0.44,0.476]	chr10	411566	59	INTRON	INTRON	ADK	ENSG00000156110.15	ENST00000672429.1:ENST00000539909.6:ENST00000286621.7:ENST00000673352.1:ENST00000673310.1:ENST00000672920.1:ENST00000672394.1:ENST00000372734.5:ENST00000673027.1:ENST00000541550.6:ENST00000672604.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	43	2	2.74063	2.849615	2.9586	0.0176095	0.00758318	0.105143	0.0773151
chr13	21142715	21142815	5455098	0	+	0.46	(0.44,0.476]	chr13	522761	12	INTRON	INTRON	SAP18	ENSG00000150459.12	ENST00000621421.4:ENST00000382533.8:ENST00000607003.5:ENST00000492245.5:ENST00000450573.5:ENST00000467636.1	protein_coding	protein_coding	protein_coding	protein_coding	2	43	2	2.74063	2.849615	2.9586	0.0176095	0.00758318	0.105143	0.0773151
chr9	91821092	91821192	4283973	0	-	0.46	(0.44,0.476]	chr9	393909	449	INTRON	INTRON	ROR2	ENSG00000169071.15	ENST00000375715.5:ENST00000375708.4:ENST00000550066.5:ENST00000495386.5:ENST00000546883.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	43	2	2.74063	2.849615	2.9586	0.0176095	0.00758318	0.105143	0.0773151
chr5	70429385	70429484	2382868	0	+	0.343434	(0.32,0.35]	chr5	229712	13	INTRON	INTRON	GTF2H2B	ENSG00000226259.10	ENST00000508065.7:ENST00000513202.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	5	92	2	2.21292	2.8495600000000003	3.4862	0.00445585	0.001711	0.0610799	0.037419
chr12	55760143	55760236	5332243	0	-	0.397849	(0.378,0.408]	chr12	509120	2	SS5_PROX	SS5_PROX:INTRON	SARNP	ENSG00000205323.9	ENST00000546604.5:ENST00000552884.5:ENST00000336133.8:ENST00000552946.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	48	2	2.13703	2.849555	3.56208	0.0797592	6.94246e-4	0.19979	0.0240761
chr14	31019724	31019824	5857807	0	-	0.35	(0.32,0.35]	chr14	556512	46	INTRON	INTRON	STRN3	ENSG00000196792.12	ENST00000355683.9:ENST00000357479.10:ENST00000555358.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	69	2	1.94202	2.8494800000000002	3.75694	0.0486128	3.37248e-4	0.153946	0.0163178
chr9	136444651	136444751	4374620	0	-	0.54	(0.515,0.57]	chr9	402949	2	SS5_PROX	SS5_PROX:INTRON	SEC16A	ENSG00000148396.19	ENST00000290037.10:ENST00000313050.11:ENST00000371706.8:ENST00000453963.5:ENST00000277537.10:ENST00000313084.9:ENST00000684901.1:ENST00000689049.1:ENST00000689439.1:ENST00000688461.1:ENST00000688052.1:ENST00000690691.1:ENST00000431893.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	68	2	2.07721	2.849425	3.62164	0.0067022	5.41944e-4	0.0738715	0.0215026
chr9	130076798	130076880	4211185	0	+	0.5	(0.476,0.515]	chr9	386004	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GPR107	ENSG00000148358.20	ENST00000372406.5:ENST00000372410.7:ENST00000347136.11:ENST00000493417.5:ENST00000610997.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	33	2	1.68092	2.8493449999999996	4.01777	0.0474026	0.0411361	0.169265	0.1451
chr14	102629012	102629112	5822897	0	+	0.54	(0.515,0.57]	chr14	552490	353	INTRON	INTRON	RCOR1	ENSG00000089902.10	ENST00000262241.7	protein_coding	protein_coding	protein_coding	protein_coding	3	50	2	2.38476	2.84932	3.31388	0.0110593	0.00174704	0.0873897	0.0386026
chr1	28741171	28741263	58388	0	+	0.543478	(0.515,0.57]	chr1	7597	4	INTRON	INTRON	YTHDF2	ENSG00000198492.16	ENST00000542507.5:ENST00000474884.5:ENST00000373812.8:ENST00000541996.5:ENST00000478283.5:ENST00000496288.5:ENST00000476976.1:ENST00000475796.5:ENST00000468863.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	60	2	2.496	2.8491999999999997	3.2024	0.00322022	0.00225531	0.0507087	0.0436331
chr18	13042434	13042534	6877097	0	+	0.29	(0.28,0.32]	chr18	681427	1	SS5_PROX	SS5_PROX:INTRON	CEP192	ENSG00000101639.19	ENST00000325971.12:ENST00000506447.5:ENST00000589596.5:ENST00000513432.5:ENST00000511820.6:ENST00000510237.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	54	2	2.78004	2.84918	2.91832	0.0193244	0.0102484	0.108861	0.089002
chr6	125007375	125007475	2951925	0	+	0.5	(0.476,0.515]	chr6	277690	8	INTRON	INTRON	RNF217	ENSG00000146373.17	ENST00000521654.7:ENST00000560949.5:ENST00000519565.5:ENST00000454842.2:ENST00000368414.6:ENST00000519799.5:ENST00000359704.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	111	2	2.64581	2.849075	3.05234	0.00154394	1.48283e-4	0.0357205	0.0105822
chr14	96809558	96809658	5810976	0	+	0.41	(0.408,0.44]	chr14	551001	94	INTRON	INTRON	VRK1	ENSG00000100749.9	ENST00000553683.2:ENST00000680538.1:ENST00000555351.2:ENST00000681195.1:ENST00000681524.1:ENST00000680084.1:ENST00000679533.1:ENST00000681598.1:ENST00000679727.1:ENST00000679758.1:ENST00000680509.1:ENST00000557222.6:ENST00000679977.1:ENST00000680387.1:ENST00000680335.1:ENST00000680683.1:ENST00000681474.1:ENST00000216639.8:ENST00000681363.1:ENST00000681538.1:ENST00000679736.1:ENST00000681176.1:ENST00000680922.1:ENST00000679903.1:ENST00000557352.2:ENST00000681101.1:ENST00000681419.1:ENST00000680348.1:ENST00000679941.1:ENST00000679452.1:ENST00000680849.1:ENST00000679770.1:ENST00000681493.1:ENST00000681778.1:ENST00000680993.1:ENST00000681355.1:ENST00000681695.1:ENST00000681344.1:ENST00000680007.1:ENST00000679918.1:ENST00000681785.1:ENST00000679816.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	44	2	2.74518	2.84907	2.95296	0.0152229	0.00929354	0.108535	0.0817766
chr17	36564066	36564166	6602050	0	+	0.31	(0.28,0.32]	chr17	642565	28	INTRON	INTRON	GGNBP2	ENSG00000278311.5	ENST00000613102.5:ENST00000617860.4:ENST00000618837.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	57	2	2.18975	2.849055	3.50836	0.0776042	0.00117393	0.196285	0.0316446
chr6	26125546	26125645	2837007	0	+	0.575758	(0.57,1]	chr6	266010	4	INTRON	INTRON	H2AC6	ENSG00000180573.10	ENST00000314088.6:ENST00000602637.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	49	2	2.64903	2.8490450000000003	3.04906	9.85026e-4	4.97245e-4	0.0288488	0.0206993
chr2	55685348	55685448	1125684	0	-	0.47	(0.44,0.476]	chr2	120827	3	SS3_PROX	SS3_PROX:INTRON	PNPT1	ENSG00000138035.15	ENST00000447944.7:ENST00000415374.5:ENST00000260604.8:ENST00000429805.1:ENST00000625249.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	69	2	2.38763	2.84887	3.31011	0.00394089	0.00259023	0.0573041	0.0452934
chr13	28229667	28229767	5461745	0	+	0.32	(0.28,0.32]	chr13	523267	89	INTRON	INTRON	PAN3	ENSG00000152520.14	ENST00000503791.5:ENST00000380958.8:ENST00000399613.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	73	2	2.77917	2.84884	2.91851	0.0130672	0.00285651	0.093385	0.0494641
chr1	54351429	54351528	463210	0	-	0.50505	(0.476,0.515]	chr1	55780	157	INTRON	INTRON	SSBP3	ENSG00000157216.16	ENST00000610401.5:ENST00000357475.9:ENST00000371319.8:ENST00000417664.7:ENST00000533946.6:ENST00000326956.12:ENST00000371320.8:ENST00000525990.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	29	2	1.72558	2.848795	3.97201	0.0767648	0.030904	0.196164	0.143385
chr16	21421116	21421210	6460520	0	-	0.5	(0.476,0.515]	chr16	623198	10	INTRON	INTRON	NPIPB3	ENSG00000169246.16	ENST00000504841.6:ENST00000419180.6:ENST00000519305.6:ENST00000521589.5:ENST00000534903.1:ENST00000538439.1:ENST00000545358.5:ENST00000535190.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	29	2	1.72558	2.848795	3.97201	0.0767648	0.030904	0.196164	0.143385
chrX	154771406	154771502	7739381	0	+	0.489583	(0.476,0.515]	chrX	792423	3	EXON_MRNA	EXON_MRNA:INTRON	DKC1	ENSG00000130826.19	ENST00000620277.4:ENST00000413910.6:ENST00000426673.6:ENST00000696575.1:ENST00000369550.10:ENST00000696579.1:ENST00000696578.1:ENST00000696577.1:ENST00000696580.1:ENST00000696581.1:ENST00000696582.1:ENST00000696583.1:ENST00000696627.1:ENST00000696628.1:ENST00000696584.1:ENST00000696585.1:ENST00000696586.1:ENST00000696587.1:ENST00000696588.1:ENST00000412124.5:ENST00000484317.6:ENST00000696589.1:ENST00000696590.1:ENST00000475966.1:ENST00000696591.1:ENST00000696592.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	29	2	1.72558	2.848795	3.97201	0.0767648	0.030904	0.196164	0.143385
chr1	32856624	32856722	66969	0	+	0.387755	(0.378,0.408]	chr1	8593	7	UTR3	UTR3:EXON_MRNA	S100PBP	ENSG00000116497.18	ENST00000373476.5:ENST00000373475.10	protein_coding	protein_coding	protein_coding	protein_coding	7	133	2	2.52759	2.84876	3.16993	0.00131675	7.75659e-5	0.0331539	0.00735438
chr20	57407242	57407342	7288931	0	+	0.61	(0.57,1]	chr20	741613	3	SS3_PROX	SS3_PROX:INTRON	RBM38	ENSG00000132819.17	ENST00000356208.10:ENST00000440234.6:ENST00000342690.4:ENST00000344785.10:ENST00000371219.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	21	2	1.52865	2.8487299999999998	4.16881	0.0730445	0.00574776	0.189414	0.0681402
chr3	197649394	197649487	1904046	0	-	0.311828	(0.28,0.32]	chr3	190775	2	EXON_LNCRNA	EXON_LNCRNA	ENSG00000286909	ENSG00000286909.1	ENST00000667447.1	lncRNA	lncRNA	lncRNA	lncRNA	2	37	2	1.81582	2.848635	3.88145	0.068122	0.0561985	0.184298	0.18407
chr12	55983012	55983111	5144954	0	+	0.323232	(0.32,0.35]	chr12	485924	17	INTRON	INTRON	RAB5B	ENSG00000111540.16	ENST00000553116.5:ENST00000549505.5:ENST00000360299.10:ENST00000546810.1:ENST00000548068.5:ENST00000549915.5:ENST00000448789.2:ENST00000551459.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	109	2	2.62513	2.84858	3.07203	0.00156724	0.00109373	0.0365592	0.0304174
chr16	23839501	23839600	6323793	0	+	0.494949	(0.476,0.515]	chr16	605693	17	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000498058.1:ENST00000645517.1:ENST00000498739.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	58	2	2.81076	2.8485300000000002	2.8863	0.0111679	0.00203568	0.0877435	0.0417667
chr5	32603879	32603979	2334941	0	+	0.26	[0,0.28]	chr5	225378	29	UTR3	UTR3:EXON_MRNA	SUB1	ENSG00000113387.12	ENST00000265073.9	protein_coding	protein_coding	protein_coding	protein_coding	3	83	2	2.45042	2.848505	3.24659	0.010819	0.00570201	0.0920575	0.0656459
chr9	131152094	131152194	4215900	0	+	0.4	(0.378,0.408]	chr9	386590	2	SS5_PROX	SS5_PROX:INTRON	NUP214	ENSG00000126883.19	ENST00000695497.1:ENST00000695498.1:ENST00000695496.1:ENST00000695495.1:ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000651022.1:ENST00000525980.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	154	2	2.78965	2.8485	2.90735	2.29046e-4	2.02698e-4	0.0133403	0.0129814
chr1	40211795	40211895	80473	0	+	0.53	(0.515,0.57]	chr1	10431	88	INTRON	INTRON	RLF	ENSG00000117000.9	ENST00000372771.5	protein_coding	protein_coding	protein_coding	protein_coding	6	91	2	2.261	2.84849	3.43598	0.00333544	7.05043e-5	0.0512081	0.00694412
chr19	49102525	49102621	7088554	0	+	0.604167	(0.57,1]	chr19	709564	5	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	SNRNP70	ENSG00000104852.15	ENST00000601065.5:ENST00000598441.6:ENST00000401730.5:ENST00000221448.9:ENST00000595231.5:ENST00000544278.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	20	176	2	2.60234	2.848385	3.09443	5.64679e-6	4.18888e-7	0.00177762	3.37394e-4
chr7	6033527	6033627	3475978	0	-	0.31	(0.28,0.32]	chr7	325180	41	INTRON	INTRON	EIF2AK1	ENSG00000086232.13	ENST00000199389.11	protein_coding	protein_coding	protein_coding	protein_coding	3	39	2	1.6633	2.848375	4.03345	0.0704058	0.0522231	0.184298	0.177274
chr7	150266553	150266653	3673080	0	-	0.31	(0.28,0.32]	chr7	340876	171	INTRON	INTRON	ACTR3C	ENSG00000106526.11	ENST00000478393.5:ENST00000683684.1:ENST00000252071.8	protein_coding	protein_coding	protein_coding	protein_coding	6	112	2	1.81786	2.848325	3.87879	0.0142986	4.20566e-4	0.104025	0.0189827
chr21	43093342	43093436	7468191	0	-	0.489362	(0.476,0.515]	chr21	761099	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	U2AF1	ENSG00000160201.12	ENST00000291552.9:ENST00000380276.6:ENST00000464750.5:ENST00000475639.5:ENST00000459639.5:ENST00000478282.1:ENST00000471250.5:ENST00000486519.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	59	2	2.62236	2.84829	3.07422	0.00517	0.00506023	0.0646039	0.0631506
chr12	120580233	120580328	5434454	0	-	0.421053	(0.408,0.44]	chr12	519592	2	SS3_PROX	SS3_PROX:INTRON	POP5	ENSG00000167272.11	ENST00000357500.5:ENST00000341039.6:ENST00000542776.5:ENST00000543355.5:ENST00000535245.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	59	2	2.49218	2.848275	3.20437	0.00855168	0.00306596	0.0780217	0.0509893
chr2	20295599	20295696	1076221	0	-	0.195876	[0,0.28]	chr2	114988	7	INTRON	INTRON	PUM2	ENSG00000055917.16	ENST00000338086.9:ENST00000361078.7:ENST00000440577.5	protein_coding	protein_coding	protein_coding	protein_coding	3	84	2	2.81922	2.84826	2.8773	0.0197411	0.00226728	0.109608	0.0437013
chr3	138757376	138757475	1830722	0	-	0.383838	(0.378,0.408]	chr3	184043	10	INTRON	INTRON	PIK3CB	ENSG00000051382.9	ENST00000674063.1:ENST00000289153.6:ENST00000477593.5:ENST00000462898.5:ENST00000483968.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	97	2	2.51043	2.848255	3.18608	0.00304007	3.50013e-4	0.0493883	0.0166791
chr19	35624583	35624679	7055819	0	+	0.46875	(0.44,0.476]	chr19	704190	15	UTR3	UTR3:EXON_MRNA	HAUS5	ENSG00000249115.9	ENST00000203166.10:ENST00000424522.5:ENST00000428854.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	60	2	2.67282	2.84824	3.02366	0.00603307	0.00433875	0.0700813	0.0579868
chrX	52956564	52956662	7817743	0	-	0.5	(0.476,0.515]	chrX	797362	4	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	FAM156A	ENSG00000268350.8	ENST00000613284.1:ENST00000611661.4:ENST00000622732.5:ENST00000622323.5:ENST00000612083.5:ENST00000610625.5:ENST00000618601.5:ENST00000619373.5:ENST00000622447.5:ENST00000619518.5:ENST00000617970.4:ENST00000622197.5:ENST00000612846.5:ENST00000619586.5:ENST00000612915.4:ENST00000615092.4:ENST00000623782.3:ENST00000596733.7:ENST00000616592.1:ENST00000619897.4:ENST00000616235.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	127	2	2.43821	2.848205	3.2582	0.00177508	4.43501e-5	0.0378678	0.00540124
chr13	95109937	95110037	5637939	0	-	0.38	(0.378,0.408]	chr13	537050	134	INTRON	INTRON	ABCC4	ENSG00000125257.16	ENST00000645237.2:ENST00000643051.1:ENST00000643842.1:ENST00000646439.1:ENST00000644880.1:ENST00000643816.1:ENST00000536256.3:ENST00000643556.1:ENST00000629385.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	82	2	2.0848	2.8481899999999998	3.61158	0.00697927	8.34292e-4	0.0754576	0.0266389
chr7	151516295	151516394	3674890	0	-	0.474747	(0.44,0.476]	chr7	341207	178	INTRON	INTRON	RHEB	ENSG00000106615.10	ENST00000262187.10:ENST00000472642.5:ENST00000478470.5:ENST00000496004.5:ENST00000470370.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	15	251	2	2.57382	2.848185	3.12255	3.81597e-5	2.34062e-5	0.00496391	0.00395959
chr3	196503173	196503272	1900018	0	-	0.40404	(0.378,0.408]	chr3	190266	1	UTR5	UTR5:EXON_MRNA	RNF168	ENSG00000163961.4	ENST00000318037.3:ENST00000437070.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	85	2	2.54736	2.84814	3.14892	0.00499984	8.3709e-4	0.0617433	0.0263691
chr1	71066217	71066310	482872	0	-	0.290323	(0.28,0.32]	chr1	57844	6	EXON_LNCRNA	EXON_LNCRNA:SS3_PROX:SS5_PROX:INTRON	ZRANB2	ENSG00000132485.14	ENST00000370920.8:ENST00000477096.1:ENST00000254821.10:ENST00000487510.1:ENST00000479947.1:ENST00000473260.1:ENST00000611683.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	232	2	2.7494	2.847925	2.94645	4.0908e-4	6.67976e-5	0.0185763	0.00677892
chr12	62391429	62391529	5150886	0	+	0.31	(0.28,0.32]	chr12	487403	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	USP15	ENSG00000135655.16	ENST00000353364.7:ENST00000280377.10	protein_coding	protein_coding	protein_coding	protein_coding	4	88	2	2.53475	2.84788	3.16101	0.0061861	0.00257029	0.0677395	0.0466761
chr11	68467714	68467814	4817402	0	+	0.37	(0.35,0.378]	chr11	448907	65	INTRON	INTRON	PPP6R3	ENSG00000110075.15	ENST00000530427.5:ENST00000528635.5:ENST00000529907.5:ENST00000533127.5:ENST00000534534.5:ENST00000529344.5:ENST00000524845.5:ENST00000393800.7:ENST00000265637.8:ENST00000524904.5:ENST00000393801.7:ENST00000265636.9:ENST00000529710.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	160	2	2.55441	2.847585	3.14076	0.00126698	3.17876e-5	0.0325433	0.00449975
chr4	84788949	84789041	2189456	0	-	0.48913	(0.476,0.515]	chr4	215166	9	INTRON	INTRON	WDFY3	ENSG00000163625.16	ENST00000295888.9	protein_coding	protein_coding	protein_coding	protein_coding	2	30	2	1.86492	2.84755	3.83018	0.0550347	0.0423385	0.165463	0.161744
chr6	146857836	146857936	2988423	0	+	0.55	(0.515,0.57]	chr6	279959	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ENSG00000227748	ENSG00000227748.2	ENST00000661207.1:ENST00000657330.1:ENST00000436295.2:ENST00000658795.1	lncRNA	lncRNA	lncRNA	lncRNA	5	71	2	1.68552	2.847385	4.00925	0.0292028	7.7342e-5	0.141637	0.00784644
chr12	123291307	123291407	5444440	0	-	0.39	(0.378,0.408]	chr12	520952	23	UTR3	UTR3:EXON_MRNA	SBNO1	ENSG00000139697.14	ENST00000602398.3:ENST00000267176.8:ENST00000420886.6	protein_coding	protein_coding	protein_coding	protein_coding	4	72	2	2.50099	2.847335	3.19368	0.00426861	0.00245021	0.0573912	0.0457892
chr17	16041093	16041192	6733431	0	-	0.393939	(0.378,0.408]	chr17	660500	2	INTRON	INTRON	NCOR1	ENSG00000141027.22	ENST00000268712.8:ENST00000395851.5:ENST00000470782.5:ENST00000464381.5:ENST00000395849.6:ENST00000579573.2:ENST00000580554.1:ENST00000579606.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	72	2	2.50099	2.847335	3.19368	0.00426861	0.00245021	0.0573912	0.0457892
chr22	49626070	49626160	7602347	0	-	0.422222	(0.408,0.44]	chr22	778588	8	INTRON	INTRON	MIR3667HG	ENSG00000188511.13	ENST00000414287.5:ENST00000416411.1:ENST00000689875.1:ENST00000400023.5:ENST00000405854.5:ENST00000444628.2	lncRNA	lncRNA	lncRNA	lncRNA	10	178	2	2.41126	2.847265	3.28327	7.3572e-4	1.03766e-5	0.02495	0.00235262
chr5	150536482	150536580	2520196	0	+	0.336735	(0.32,0.35]	chr5	241063	2	INTRON	INTRON	NDST1	ENSG00000070614.15	ENST00000523767.5:ENST00000261797.7	protein_coding	protein_coding	protein_coding	protein_coding	2	50	2	2.51061	2.847265	3.18392	0.0364463	0.00379806	0.138959	0.0562562
chr8	67147590	67147690	3777494	0	+	0.33	(0.32,0.35]	chr8	350387	84	INTRON	INTRON	CSPP1	ENSG00000104218.16	ENST00000676113.1:ENST00000675306.2:ENST00000678156.1:ENST00000262210.11:ENST00000678017.1:ENST00000675869.1:ENST00000678542.1:ENST00000677619.1:ENST00000676605.1:ENST00000676471.1:ENST00000677256.1:ENST00000676847.1:ENST00000677009.1:ENST00000676317.1:ENST00000677592.1:ENST00000676573.1:ENST00000678318.1:ENST00000677473.1:ENST00000674993.1:ENST00000679226.1:ENST00000676882.1:ENST00000675955.1:ENST00000677430.1:ENST00000677455.1:ENST00000678616.1:ENST00000678362.1:ENST00000679112.1:ENST00000678645.1:ENST00000676567.1:ENST00000677845.1:ENST00000519163.6:ENST00000676858.1:ENST00000678747.1:ENST00000519668.1:ENST00000676697.1:ENST00000677855.1:ENST00000676695.1:ENST00000676534.1:ENST00000678138.1:ENST00000678807.1:ENST00000677052.1:ENST00000679274.1:ENST00000679042.1:ENST00000678635.1:ENST00000676804.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	50	2	2.51061	2.847265	3.18392	0.0364463	0.00379806	0.138959	0.0562562
chr1	244860142	244860238	673061	0	-	0.510417	(0.476,0.515]	chr1	79630	9	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	HNRNPU	ENSG00000153187.20	ENST00000649899.1:ENST00000638230.1:ENST00000640306.1:ENST00000444376.7:ENST00000640218.2:ENST00000639628.2:ENST00000440865.2:ENST00000638952.1:ENST00000638716.1:ENST00000366525.8:ENST00000639880.1:ENST00000283179.14:ENST00000638475.1:ENST00000476241.2:ENST00000640001.1:ENST00000640056.1:ENST00000638301.1:ENST00000639667.1:ENST00000465881.2:ENST00000638589.1:ENST00000640440.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	70	2	1.83961	2.8472299999999997	3.85485	0.0314489	1.63076e-4	0.13151	0.0109774
chr16	29441828	29441927	6469949	0	-	0.383838	(0.378,0.408]	chr16	625044	15	INTRON	INTRON	SMG1P6	ENSG00000254634.4	ENST00000532337.1	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	4	81	2	2.82967	2.847155	2.86464	0.00215581	0.00189968	0.0417866	0.0402736
chr2	27586806	27586905	717971	0	+	0.262626	[0,0.28]	chr2	83352	27	INTRON	INTRON	ZNF512	ENSG00000243943.10	ENST00000413371.6:ENST00000416005.6:ENST00000556601.5:ENST00000379717.5:ENST00000355467.6:ENST00000494548.1:ENST00000461705.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	61	2	2.64309	2.847115	3.05114	0.0308646	0.0075493	0.13151	0.0773151
chr7	152420834	152420934	3681142	0	-	0.28	[0,0.28]	chr7	341660	618	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000682301.1:ENST00000452749.2:ENST00000680867.1:ENST00000683800.1:ENST00000684278.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	61	2	2.64309	2.847115	3.05114	0.0308646	0.0075493	0.13151	0.0773151
chr17	22107895	22107995	6578742	0	+	0.23	[0,0.28]	chr17	639556	166	INTRON	INTRON	UBBP4	ENSG00000263563.7	ENST00000648259.1:ENST00000688301.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	2	61	2	2.68918	2.84708	3.00498	0.0275571	0.00876063	0.123904	0.0846118
chr6	160031052	160031152	3023593	0	+	0.59	(0.57,1]	chr6	282049	10	INTRON	INTRON	IGF2R	ENSG00000197081.16	ENST00000676781.1:ENST00000677704.1:ENST00000356956.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	24	2	2.66438	2.847025	3.02967	0.0171563	0.00471306	0.104099	0.0631419
chr1	182390206	182390304	599053	0	-	0.397959	(0.378,0.408]	chr1	71414	16	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	GLUL	ENSG00000135821.19	ENST00000331872.11:ENST00000642379.1:ENST00000311223.9:ENST00000417584.6:ENST00000339526.8:ENST00000491322.1:ENST00000463851.6:ENST00000484996.5:ENST00000489818.5:ENST00000480604.5:ENST00000462444.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	14	266	2	2.43812	2.846865	3.25561	1.87445e-4	6.63679e-6	0.011951	0.00194394
chr19	8470925	8471025	7011034	0	+	0.45	(0.44,0.476]	chr19	696182	2	SS3_PROX	SS3_PROX:INTRON	HNRNPM	ENSG00000099783.12	ENST00000348943.7:ENST00000600092.5:ENST00000325495.9:ENST00000600806.5:ENST00000620401.4:ENST00000594907.5:ENST00000601645.5:ENST00000598367.5:ENST00000597270.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	43	2	2.60774	2.846825	3.08591	0.0255874	0.00481262	0.120269	0.0638089
chr1	44864355	44864454	436555	0	-	0.494949	(0.476,0.515]	chr1	52901	8	INTRON	INTRON	EIF2B3	ENSG00000070785.17	ENST00000620860.4:ENST00000360403.7:ENST00000439363.5:ENST00000486491.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	43	2	2.80729	2.846795	2.8863	0.0126008	0.0111679	0.0980703	0.0877435
chrX	138857211	138857311	7900133	0	-	0.48	(0.476,0.515]	chrX	804226	3	SS5_PROX	SS5_PROX:INTRON	FGF13	ENSG00000129682.16	ENST00000441825.8:ENST00000626909.2:ENST00000436198.5:ENST00000455663.5:ENST00000448673.1	protein_coding	protein_coding	protein_coding	protein_coding	2	43	2	2.80729	2.846795	2.8863	0.0126008	0.0111679	0.0980703	0.0877435
chrX	24753476	24753576	7632311	0	+	0.43	(0.408,0.44]	chrX	781725	41	INTRON	INTRON	POLA1	ENSG00000101868.13	ENST00000672178.1:ENST00000379068.8:ENST00000379059.7:ENST00000611764.2:ENST00000480125.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	37	2	1.58763	2.846785	4.10594	0.0639217	0.0219367	0.177824	0.123836
chr1	54380387	54380487	463501	0	-	0.58	(0.57,1]	chr1	55784	237	INTRON	INTRON	SSBP3	ENSG00000157216.16	ENST00000610401.5:ENST00000357475.9:ENST00000371319.8:ENST00000417664.7:ENST00000533946.6:ENST00000371320.8:ENST00000525990.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	24	2	2.79889	2.8467599999999997	2.89463	0.0110274	0.00788262	0.0927187	0.076155
chr15	28670002	28670098	5988751	0	+	0.583333	(0.57,1]	chr15	569388	13	INTRON	INTRON	HERC2P9	ENSG00000206149.11	ENST00000529624.5:ENST00000530420.5:ENST00000528584.5	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript:transcribed_unprocessed_pseudogene	2	24	2	2.79889	2.8467599999999997	2.89463	0.0110274	0.00788262	0.0927187	0.076155
chr5	139650495	139650593	2501220	0	+	0.653061	(0.57,1]	chr5	239070	11	INTRON	INTRON	CXXC5	ENSG00000171604.12	ENST00000502295.1:ENST00000504944.1:ENST00000302517.8:ENST00000507139.5:ENST00000504844.1:ENST00000502336.5:ENST00000520967.1:ENST00000511048.1	protein_coding	protein_coding	protein_coding	protein_coding	2	24	2	2.79889	2.8467599999999997	2.89463	0.0110274	0.00788262	0.0927187	0.076155
chr6	2955949	2956042	3047564	0	-	0.580645	(0.57,1]	chr6	283568	4	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SERPINB6	ENSG00000124570.21	ENST00000643098.1:ENST00000380546.7:ENST00000380539.7:ENST00000380529.5:ENST00000380524.5:ENST00000643314.1:ENST00000646722.1:ENST00000649845.1:ENST00000644178.1:ENST00000612421.3:ENST00000647157.1:ENST00000616722.4:ENST00000642543.1:ENST00000644388.1:ENST00000380520.6:ENST00000645580.1:ENST00000644693.1:ENST00000644828.1:ENST00000646775.1:ENST00000645421.1:ENST00000643227.1:ENST00000646688.1:ENST00000644777.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	24	2	2.79889	2.8467599999999997	2.89463	0.0110274	0.00788262	0.0927187	0.076155
chr2	113954628	113954727	854904	0	+	0.393939	(0.378,0.408]	chr2	95950	29	EXON_MRNA	EXON_MRNA:INTRON	ACTR3	ENSG00000115091.12	ENST00000263238.7:ENST00000535589.3:ENST00000478928.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	92	2	2.22007	2.846645	3.47322	0.0022373	0.00147803	0.0435144	0.0348908
chr3	143050738	143050838	1529600	0	+	0.47	(0.44,0.476]	chr3	159460	4	SS3_PROX	SS3_PROX:INTRON	U2SURP	ENSG00000163714.18	ENST00000488497.7:ENST00000473835.7:ENST00000493598.6:ENST00000463563.6:ENST00000480029.5:ENST00000467348.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	44	2	2.38219	2.846645	3.3111	0.045456	0.0020006	0.149888	0.0412555
chr17	16147333	16147428	6734543	0	-	0.473684	(0.44,0.476]	chr17	660697	4	INTRON	INTRON	NCOR1	ENSG00000141027.22	ENST00000268712.8:ENST00000395851.5:ENST00000395848.5:ENST00000411510.5:ENST00000582357.5:ENST00000436828.5:ENST00000460276.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	43	2	2.80275	2.84661	2.89047	0.0146513	0.00955699	0.0982604	0.0863913
chr17	61779766	61779864	6808084	0	-	0.469388	(0.44,0.476]	chr17	672552	11	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	BRIP1	ENSG00000136492.10	ENST00000259008.7:ENST00000682755.1:ENST00000682453.1:ENST00000683039.1:ENST00000682989.1:ENST00000682589.1:ENST00000683235.1:ENST00000682477.1:ENST00000684584.1:ENST00000682073.1:ENST00000577598.5:ENST00000684471.1:ENST00000682066.1:ENST00000584322.2:ENST00000683381.1:ENST00000579028.2:ENST00000583837.5:ENST00000682611.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	43	2	2.80275	2.84661	2.89047	0.0146513	0.00955699	0.0982604	0.0863913
chr4	1850602	1850701	2095713	0	-	0.444444	(0.44,0.476]	chr4	207344	10	INTRON	INTRON	LETM1	ENSG00000168924.15	ENST00000302787.3:ENST00000466175.5:ENST00000512189.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	43	2	2.80275	2.84661	2.89047	0.0146513	0.00955699	0.0982604	0.0863913
chr4	47868970	47869070	2134851	0	-	0.45	(0.44,0.476]	chr4	210399	57	INTRON	INTRON	NFXL1	ENSG00000170448.12	ENST00000329043.7:ENST00000464756.6:ENST00000381538.7:ENST00000507489.2:ENST00000502448.5:ENST00000507131.5:ENST00000508115.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	43	2	2.80275	2.84661	2.89047	0.0146513	0.00955699	0.0982604	0.0863913
chr9	34242308	34242408	4111909	0	+	0.46	(0.44,0.476]	chr9	374741	2	SS5_PROX	SS5_PROX:INTRON	UBAP1	ENSG00000165006.14	ENST00000625521.2:ENST00000379186.8:ENST00000297661.9:ENST00000626262.2:ENST00000359544.2	protein_coding	protein_coding	protein_coding	protein_coding	2	43	2	2.80275	2.84661	2.89047	0.0146513	0.00955699	0.0982604	0.0863913
chr12	121336601	121336695	5437023	0	-	0.56383	(0.515,0.57]	chr12	519901	5	INTRON	INTRON	ANAPC5	ENSG00000089053.13	ENST00000261819.8:ENST00000541887.5:ENST00000534976.5:ENST00000441917.6:ENST00000539079.5:ENST00000545218.5:ENST00000535472.5:ENST00000538223.1:ENST00000539612.5:ENST00000541652.5:ENST00000544442.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	91	2	2.35275	2.846415	3.34008	0.00219906	1.23135e-4	0.0417893	0.00949625
chr15	84550069	84550169	6251165	0	-	0.3	(0.28,0.32]	chr15	596581	34	INTRON	INTRON	UBE2Q2P1	ENSG00000189136.9	ENST00000354771.8:ENST00000339094.5:ENST00000561403.6:ENST00000558251.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	2	56	2	2.2609	2.84638	3.43186	0.0671429	0.00160646	0.183051	0.0367961
chr11	3857108	3857208	4723475	0	+	0.4	(0.378,0.408]	chr11	437119	3	INTRON	INTRON	STIM1	ENSG00000167323.12	ENST00000525403.5:ENST00000526596.2:ENST00000300737.8:ENST00000616714.4:ENST00000527651.5	protein_coding	protein_coding	protein_coding	protein_coding	5	82	2	2.04798	2.846085	3.64419	0.00809949	7.25777e-4	0.0808864	0.0247646
chr11	85977969	85978069	5013903	0	-	0.37	(0.35,0.378]	chr11	472920	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000530692.5:ENST00000630913.2:ENST00000529760.5:ENST00000528398.5:ENST00000532603.5:ENST00000356360.9:ENST00000529016.5:ENST00000526961.5:ENST00000526907.1:ENST00000530542.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	11	172	2	2.20103	2.84602	3.49101	5.98456e-4	1.34559e-4	0.0222939	0.0106016
chr11	82910716	82910814	4839936	0	+	0.479592	(0.476,0.515]	chr11	451412	10	INTRON	INTRON	DDIAS	ENSG00000165490.13	ENST00000532277.5:ENST00000525361.5:ENST00000528759.5:ENST00000524921.5:ENST00000532764.5:ENST00000533655.6:ENST00000528189.5:ENST00000532589.5:ENST00000525388.5:ENST00000528262.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	49	2	1.86182	2.846	3.83018	0.0423385	0.0178986	0.161744	0.106365
chr17	28611042	28611142	6744762	0	-	0.41	(0.408,0.44]	chr17	662487	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RSKR	ENSG00000167524.16	ENST00000577790.2:ENST00000584196.1:ENST00000301037.11:ENST00000494272.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	58	2	2.44674	2.84592	3.2451	0.00868283	0.00337792	0.0842798	0.0516884
chr10	120860195	120860282	4531432	0	+	0.367816	(0.35,0.378]	chr10	418092	2	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	WDR11	ENSG00000120008.16	ENST00000605202.5:ENST00000263461.11:ENST00000605543.5:ENST00000605069.5:ENST00000605178.5:ENST00000604585.5:ENST00000497136.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	63	2	2.80179	2.84591	2.89003	0.0122391	0.00223906	0.0910127	0.0435144
chr8	67061422	67061508	3961840	0	-	0.337209	(0.32,0.35]	chr8	363497	1	EXON_MRNA	EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	COPS5	ENSG00000121022.14	ENST00000517736.5:ENST00000521509.5:ENST00000357849.9:ENST00000518374.5:ENST00000521386.5:ENST00000523890.5:ENST00000518747.1:ENST00000517793.1:ENST00000517406.1:ENST00000519963.5:ENST00000519057.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	68	2	2.79707	2.84591	2.89475	0.0170923	0.00160352	0.104099	0.0367961
chr18	12968468	12968567	6876365	0	+	0.333333	(0.32,0.35]	chr18	681295	36	INTRON	INTRON	SEH1L	ENSG00000085415.16	ENST00000262124.15:ENST00000399892.7:ENST00000585730.5:ENST00000589446.5:ENST00000587761.1:ENST00000588251.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	111	2	2.09793	2.8458249999999996	3.59372	0.0156788	4.81573e-5	0.101453	0.00566695
chr7	148862603	148862703	3670546	0	-	0.4	(0.378,0.408]	chr7	340628	149	INTRON	INTRON	EZH2	ENSG00000106462.12	ENST00000683292.1:ENST00000320356.7:ENST00000492143.5:ENST00000478654.5:ENST00000350995.6:ENST00000460911.5:ENST00000683744.1:ENST00000682317.1:ENST00000682263.1:ENST00000684300.1:ENST00000476773.5:ENST00000483967.5:ENST00000498186.5:ENST00000483012.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	107	2	1.70456	2.84578	3.987	0.0108115	1.51115e-4	0.0920575	0.0112678
chr19	58388787	58388883	7107596	0	+	0.46875	(0.44,0.476]	chr19	713446	3	SS5_PROX	SS5_PROX:INTRON	RPS5	ENSG00000083845.9	ENST00000601521.5:ENST00000596314.5:ENST00000598098.5:ENST00000196551.8:ENST00000598495.5:ENST00000598807.1:ENST00000596046.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	126	2	2.74372	2.845765	2.94781	0.0153007	6.60958e-5	0.108569	0.0071649
chr16	31181799	31181897	6340569	0	+	0.418367	(0.408,0.44]	chr16	608317	12	INTRON	INTRON	FUS	ENSG00000089280.19	ENST00000566605.5:ENST00000254108.12:ENST00000380244.7:ENST00000487045.6:ENST00000487509.6:ENST00000568685.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	123	2	2.38928	2.845735	3.30219	0.0039105	6.02189e-5	0.0569957	0.00681482
chrX	66017649	66017748	7672629	0	+	0.484848	(0.476,0.515]	chrX	785238	13	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	MIR223HG	ENSG00000274536.8	ENST00000618234.5:ENST00000621933.2:ENST00000691658.1:ENST00000658749.1	lncRNA	lncRNA	lncRNA	lncRNA	5	92	2	2.75286	2.845725	2.93859	0.00143107	7.3224e-4	0.0340925	0.0246502
chr1	100096489	100096589	515489	0	-	0.27	[0,0.28]	chr1	60434	79	INTRON	INTRON	SASS6	ENSG00000156876.10	ENST00000462159.1:ENST00000287482.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	61	2	2.59548	2.845675	3.09587	0.0346067	0.00651565	0.136649	0.0735232
chr1	28622265	28622365	409798	0	-	0.52	(0.515,0.57]	chr1	49348	1	SS3_PROX	SS3_PROX:INTRON	TAF12	ENSG00000120656.14	ENST00000685589.1:ENST00000693642.1:ENST00000688108.1:ENST00000692098.1:ENST00000691563.1:ENST00000471683.6:ENST00000495422.2:ENST00000373824.9:ENST00000685312.1:ENST00000690860.1:ENST00000691050.1:ENST00000689843.1:ENST00000263974.4:ENST00000693729.1:ENST00000690492.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	51	2	2.6325	2.845445	3.05839	0.00485936	0.00439001	0.0640618	0.0585064
chr1	193159061	193159158	284991	0	+	0.319588	(0.28,0.32]	chr1	32812	24	EXON_LNCRNA	EXON_LNCRNA:INTRON	CDC73	ENSG00000134371.14	ENST00000649895.1:ENST00000643006.1:ENST00000367435.5:ENST00000650197.1:ENST00000648071.1:ENST00000635846.1:ENST00000649606.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	135	2	2.58813	2.8453749999999998	3.10262	0.00114045	9.04617e-4	0.0307966	0.0276086
chr17	81602292	81602389	6849249	0	-	0.494845	(0.476,0.515]	chr17	678187	15	INTRON	INTRON	NPLOC4	ENSG00000182446.14	ENST00000331134.11:ENST00000374747.9:ENST00000574897.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	58	2	2.49941	2.8453	3.19119	0.00811651	0.00325748	0.0766625	0.0524329
chr4	78895762	78895862	1982602	0	+	0.45	(0.44,0.476]	chr4	198558	81	INTRON	INTRON	BMP2K	ENSG00000138756.19	ENST00000502613.3	protein_coding	protein_coding	protein_coding	protein_coding	4	77	2	2.7096	2.8453	2.981	0.00376205	9.31193e-4	0.0539118	0.0278746
chr16	200632	200731	6425894	0	-	0.434343	(0.408,0.44]	chr16	617421	10	INTRON	INTRON	LUC7L	ENSG00000007392.17	ENST00000337351.8:ENST00000426094.5:ENST00000397783.5:ENST00000629543.2:ENST00000490762.5:ENST00000293872.13:ENST00000429378.5:ENST00000464711.5:ENST00000419516.5:ENST00000397780.5:ENST00000495349.5:ENST00000418978.5:ENST00000430864.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	45	2	2.27698	2.845105	3.41323	0.0583528	0.00129989	0.167723	0.0333764
chr7	136133278	136133378	3431586	0	+	0.42	(0.408,0.44]	chr7	319911	157	INTRON	INTRON	ENSG00000232053	ENSG00000232053.7	ENST00000657456.1:ENST00000668062.1:ENST00000668668.1:ENST00000445293.6:ENST00000659747.1:ENST00000668896.1:ENST00000435996.1	lncRNA	lncRNA	lncRNA	lncRNA	2	45	2	2.27698	2.845105	3.41323	0.0583528	0.00129989	0.167723	0.0333764
chr16	81511690	81511790	6405668	0	+	0.52	(0.515,0.57]	chr16	615031	158	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6	protein_coding	protein_coding	protein_coding	protein_coding	7	86	2	1.9706	2.84501	3.71942	0.00469345	2.61221e-4	0.0600108	0.014326
chr12	93394108	93394208	5189103	0	+	0.53	(0.515,0.57]	chr12	490795	1	SS3_PROX	SS3_PROX:INTRON	NUDT4	ENSG00000173598.14	ENST00000337179.9:ENST00000415493.7:ENST00000549992.5:ENST00000550056.5:ENST00000547014.5:ENST00000548662.5:ENST00000546925.1	protein_coding	protein_coding	protein_coding	protein_coding	2	38	2	2.43589	2.845005	3.25412	0.0370871	0.00224554	0.139194	0.0435144
chr7	66639024	66639079	3324493	0	+	0.545455	(0.515,0.57]	chr7	309160	2	CDS	CDS:UTR3:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	KCTD7	ENSG00000243335.10	ENST00000639828.2:ENST00000640385.1:ENST00000275532.8:ENST00000443322.1:ENST00000639879.1:ENST00000640851.1:ENST00000638524.1:ENST00000449064.6:ENST00000638540.1:ENST00000640234.1:ENST00000640601.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	38	2	2.43589	2.845005	3.25412	0.0370871	0.00224554	0.139194	0.0435144
chr9	37199442	37199542	4118451	0	+	0.46	(0.44,0.476]	chr9	375389	125	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000461038.5:ENST00000488607.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	93	2	2.572	2.845005	3.11801	0.00173736	6.56773e-4	0.03851	0.0233791
chr6	13693687	13693787	3059044	0	-	0.41	(0.408,0.44]	chr6	284542	345	INTRON	INTRON	RANBP9	ENSG00000010017.13	ENST00000011619.6	protein_coding	protein_coding	protein_coding	protein_coding	6	112	2	2.69846	2.844965	2.99147	0.00127877	2.05062e-4	0.0326395	0.0124557
chr12	111881415	111881512	5229129	0	+	0.556701	(0.515,0.57]	chr12	495676	5	INTRON	INTRON	MAPKAPK5	ENSG00000089022.14	ENST00000550735.7:ENST00000553053.5:ENST00000551404.6:ENST00000549875.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	26	2	1.79136	2.84496	3.89856	0.0638444	0.0280943	0.177811	0.137011
chr16	11049216	11049316	6288615	0	+	0.56	(0.515,0.57]	chr16	602221	8	INTRON	INTRON	CLEC16A	ENSG00000038532.16	ENST00000409790.6:ENST00000409552.4:ENST00000465491.5:ENST00000646363.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	26	2	1.79136	2.84496	3.89856	0.0638444	0.0280943	0.177811	0.137011
chr17	40020619	40020719	6767566	0	-	0.53	(0.515,0.57]	chr17	665724	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MED24	ENSG00000008838.21	ENST00000394126.5:ENST00000356271.7:ENST00000394128.7:ENST00000394127.6:ENST00000491466.5:ENST00000535508.6:ENST00000422942.6:ENST00000501516.7:ENST00000470126.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	26	2	1.79136	2.84496	3.89856	0.0638444	0.0280943	0.177811	0.137011
chr9	93538924	93539023	4158927	0	+	0.363636	(0.35,0.378]	chr9	379180	62	INTRON	INTRON	FAM120A	ENSG00000048828.17	ENST00000277165.11:ENST00000427765.1	protein_coding	protein_coding	protein_coding	protein_coding	3	63	2	2.32464	2.84489	3.36514	0.0159285	0.00173699	0.101453	0.03851
chr4	126692265	126692365	2237632	0	-	0.27	[0,0.28]	chr4	219023	2268	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	2	64	2	2.20927	2.84476	3.48025	0.0794763	0.00162172	0.19979	0.0369782
chr3	171779176	171779276	1869286	0	-	0.39	(0.378,0.408]	chr3	187177	79	INTRON	INTRON	PLD1	ENSG00000075651.17	ENST00000351298.9:ENST00000356327.9:ENST00000498278.5:ENST00000440204.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	46	2	2.30961	2.8446550000000004	3.3797	0.055088	0.00154501	0.165463	0.0362716
chr7	152421533	152421633	3681149	0	-	0.38	(0.378,0.408]	chr7	341660	625	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000682301.1:ENST00000452749.2:ENST00000680867.1:ENST00000683800.1:ENST00000684278.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	46	2	2.30961	2.8446550000000004	3.3797	0.055088	0.00154501	0.165463	0.0362716
chr7	17925209	17925308	3496414	0	-	0.40404	(0.378,0.408]	chr7	326520	175	INTRON	INTRON	SNX13	ENSG00000071189.21	ENST00000428135.7:ENST00000611725.4:ENST00000409076.6:ENST00000444712.5:ENST00000482558.5:ENST00000409604.1:ENST00000475800.5:ENST00000474067.5:ENST00000471744.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	61	2	2.00398	2.844575	3.68517	0.0393906	3.90172e-4	0.143072	0.0177751
chr19	15251827	15251924	7146579	0	-	0.618557	(0.57,1]	chr19	721885	22	INTRON	INTRON	BRD4	ENSG00000141867.19	ENST00000679869.1:ENST00000263377.6:ENST00000371835.8	protein_coding	protein_coding	protein_coding	protein_coding	5	43	2	2.34135	2.84443	3.34751	0.00191867	0.00122677	0.0405205	0.0320791
chr1	236807517	236807615	342618	0	+	0.295918	(0.28,0.32]	chr1	39822	9	INTRON	INTRON	MTR	ENSG00000116984.15	ENST00000680454.1:ENST00000366577.10:ENST00000674797.2:ENST00000652435.1:ENST00000679569.1:ENST00000650888.1:ENST00000463959.1:ENST00000535889.6:ENST00000651455.1:ENST00000681102.1:ENST00000679842.1:ENST00000681177.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	54	2	2.82769	2.84441	2.86113	0.0169391	0.0122675	0.103888	0.0969406
chr4	2906807	2906906	1915673	0	+	0.40404	(0.378,0.408]	chr4	192322	12	INTRON	INTRON	ADD1	ENSG00000087274.19	ENST00000683351.1:ENST00000398125.5:ENST00000264758.11:ENST00000513328.6:ENST00000503455.6:ENST00000355842.7:ENST00000651918.1:ENST00000398129.5:ENST00000398123.6:ENST00000514940.5:ENST00000536078.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	149	2	2.76092	2.844405	2.92789	0.00102361	4.41741e-5	0.029231300000000002	0.0053901
chr7	66927426	66927526	3326295	0	+	0.46	(0.44,0.476]	chr7	309335	48	INTRON	INTRON	TMEM248	ENSG00000106609.16	ENST00000341567.8:ENST00000607045.5:ENST00000433271.6:ENST00000413593.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	77	2	2.63508	2.844405	3.05373	0.00501007	6.56725e-4	0.0618077	0.0232396
chr1	150973222	150973321	553142	0	-	0.535354	(0.515,0.57]	chr1	65096	14	INTRON	INTRON	CERS2	ENSG00000143418.20	ENST00000271688.10:ENST00000345896.8:ENST00000368954.10:ENST00000361419.9:ENST00000421609.5:ENST00000457392.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	38	2	2.65834	2.844355	3.03037	0.0187418	0.00608732	0.117523	0.0676501
chr22	21690451	21690538	7482713	0	+	0.528736	(0.515,0.57]	chr22	763394	2	INTRON	INTRON	PPIL2	ENSG00000100023.20	ENST00000679795.1:ENST00000679540.1:ENST00000679580.1:ENST00000681286.1:ENST00000680061.1:ENST00000681338.1:ENST00000681956.1:ENST00000679827.1:ENST00000679534.1:ENST00000679479.1:ENST00000680393.1:ENST00000335025.12:ENST00000498109.2:ENST00000398831.8:ENST00000681394.1:ENST00000679477.1:ENST00000626352.2:ENST00000417788.5:ENST00000681791.1:ENST00000679692.1:ENST00000680962.1:ENST00000680094.1:ENST00000680434.1:ENST00000680109.1:ENST00000406385.1:ENST00000681137.1:ENST00000680860.1:ENST00000680183.1:ENST00000446951.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	38	2	2.65834	2.844355	3.03037	0.0187418	0.00608732	0.117523	0.0676501
chr22	23270359	23270455	7484113	0	+	0.520833	(0.515,0.57]	chr22	763575	15	INTRON	INTRON	BCR	ENSG00000186716.21	ENST00000359540.7:ENST00000305877.13:ENST00000427791.1	protein_coding	protein_coding	protein_coding	protein_coding	2	38	2	2.65834	2.844355	3.03037	0.0187418	0.00608732	0.117523	0.0676501
chr16	68103495	68103595	6370405	0	+	0.39	(0.378,0.408]	chr16	612188	139	INTRON	INTRON	ENSG00000261864:NFATC3	ENSG00000261864.1:ENSG00000072736.19	ENST00000548144.1:ENST00000563319.5:ENST00000569766.5:ENST00000553077.5:ENST00000566301.5:ENST00000549350.5:ENST00000566893.5:ENST00000575270.5:ENST00000561714.5:ENST00000346183.8:ENST00000568466.6:ENST00000539828.6:ENST00000562171.1:ENST00000349223.9:ENST00000329524.8:ENST00000379165.8:ENST00000562926.5:ENST00000570212.5:ENST00000563796.5:ENST00000567152.5:ENST00000563288.5:ENST00000535127.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA:processed_transcript	2	45	2	2.78705	2.844335	2.90162	0.0135539	0.0113157	0.101363	0.0886121
chr17	45158038	45158137	6782285	0	-	0.383838	(0.378,0.408]	chr17	669028	68	INTRON	INTRON	HEXIM2-AS1	ENSG00000224505.3	ENST00000589950.1:ENST00000452741.2	lncRNA	lncRNA	lncRNA	lncRNA	2	45	2	2.78705	2.844335	2.90162	0.0135539	0.0113157	0.101363	0.0886121
chr19	32700233	32700332	7049759	0	+	0.40404	(0.378,0.408]	chr19	702960	72	INTRON	INTRON	NUDT19	ENSG00000213965.4	ENST00000397061.4	protein_coding	protein_coding	protein_coding	protein_coding	2	45	2	2.78705	2.844335	2.90162	0.0135539	0.0113157	0.101363	0.0886121
chr17	61983514	61983614	6810043	0	-	0.36	(0.35,0.378]	chr17	672878	4	SS3_PROX	SS3_PROX:INTRON	MED13	ENSG00000108510.10	ENST00000397786.7	protein_coding	protein_coding	protein_coding	protein_coding	3	64	2	1.98929	2.844285	3.69928	0.0417909	3.94786e-4	0.147075	0.0178567
chr19	799716	799807	6992117	0	+	0.582418	(0.57,1]	chr19	692236	4	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	PTBP1	ENSG00000011304.22	ENST00000635647.1:ENST00000627714.2:ENST00000676227.1:ENST00000677277.1:ENST00000592804.2:ENST00000349038.8:ENST00000590887.5:ENST00000586481.5:ENST00000586944.5:ENST00000356948.11:ENST00000394601.8:ENST00000677717.1:ENST00000589575.5:ENST00000587191.3:ENST00000679114.1:ENST00000350092.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	49	2	2.60916	2.84427	3.07938	0.00119055	4.22401e-4	0.0315806	0.0183838
chr7	119683260	119683360	3628169	0	-	0.23	[0,0.28]	chr7	337315	1828	INTRON	INTRON	LINC02476	ENSG00000225546.6	ENST00000660268.1	lncRNA	lncRNA	lncRNA	lncRNA	9	241	2	2.68476	2.844035	3.00331	3.90397e-4	3.47392e-4	0.0177821	0.017378
chr9	135940259	135940352	4372347	0	-	0.483871	(0.476,0.515]	chr9	402514	1	INTRON	INTRON	UBAC1	ENSG00000130560.9	ENST00000371756.4:ENST00000489050.5:ENST00000465873.5:ENST00000471163.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	105	2	2.54395	2.8440250000000002	3.1441	8.361e-4	5.63876e-4	0.0263691	0.0219303
chr7	12390152	12390250	3485303	0	-	0.234694	[0,0.28]	chr7	325964	4	INTRON	INTRON	VWDE	ENSG00000146530.15	ENST00000275358.8:ENST00000452576.6:ENST00000521169.5:ENST00000326715.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	64	2	2.57033	2.8440149999999997	3.1177	0.0305273	0.00849154	0.143385	0.0778788
chr10	70426427	70426526	4447300	0	+	0.464646	(0.44,0.476]	chr10	410355	48	UTR3	UTR3:EXON_MRNA	EIF4EBP2	ENSG00000148730.7	ENST00000373218.5	protein_coding	protein_coding	protein_coding	protein_coding	3	58	2	2.42996	2.843985	3.25801	0.0104804	0.00248185	0.0855777	0.0460771
chr16	28955378	28955477	6334848	0	+	0.464646	(0.44,0.476]	chr16	606667	3	INTRON	INTRON	NFATC2IP	ENSG00000176953.13	ENST00000564978.5:ENST00000320805.9:ENST00000562977.1:ENST00000568998.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	58	2	2.42996	2.843985	3.25801	0.0104804	0.00248185	0.0855777	0.0460771
chr19	53085481	53085578	7210386	0	-	0.319588	(0.28,0.32]	chr19	731880	2	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ZNF160	ENSG00000170949.18	ENST00000599056.5:ENST00000418871.5:ENST00000429604.5:ENST00000683776.1:ENST00000599247.5:ENST00000355147.9:ENST00000597112.5:ENST00000602095.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	76	2	2.62686	2.8439	3.06094	0.0289217	8.54457e-4	0.1274	0.0265194
chr22	42269243	42269336	7593554	0	-	0.365591	(0.35,0.378]	chr22	777721	11	UTR5	UTR5:EXON_MRNA:INTRON	TCF20	ENSG00000100207.21	ENST00000359486.8:ENST00000677622.1:ENST00000683686.1:ENST00000675876.1:ENST00000515426.1	protein_coding	protein_coding	protein_coding	protein_coding	3	64	2	2.52395	2.84383	3.16371	0.00824736	0.00383956	0.0773378	0.0562562
chr2	135752045	135752144	876036	0	+	0.484848	(0.476,0.515]	chr2	98061	33	INTRON	INTRON	UBXN4	ENSG00000144224.17	ENST00000415164.5:ENST00000426921.5:ENST00000272638.14:ENST00000416538.5:ENST00000470687.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	69	2	2.48789	2.84382	3.19975	0.00383299	0.00256502	0.0542786	0.0466761
chr16	85592227	85592327	6415754	0	+	0.52	(0.515,0.57]	chr16	615470	355	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	5	80	2	2.496	2.8438049999999997	3.19161	0.00225531	3.49295e-4	0.0436331	0.017404
chr6	111469133	111469232	3192221	0	-	0.393939	(0.378,0.408]	chr6	297352	84	INTRON	INTRON	REV3L	ENSG00000009413.16	ENST00000422377.5:ENST00000434009.5:ENST00000368802.8:ENST00000435970.5:ENST00000358835.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	60	2	2.26009	2.843795	3.4275	0.0188651	0.00126053	0.108861	0.03295
chr15	41111788	41111887	6153195	0	-	0.393939	(0.378,0.408]	chr15	585431	151	INTRON	INTRON	INO80	ENSG00000128908.18	ENST00000648947.1:ENST00000401393.7:ENST00000558357.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	46	2	2.63247	2.843745	3.05502	0.0215745	0.00689519	0.123836	0.0717484
chr5	131533728	131533828	2718153	0	-	0.38	(0.378,0.408]	chr5	255596	8	INTRON	INTRON	RAPGEF6	ENSG00000158987.22	ENST00000509018.6:ENST00000507093.5:ENST00000296859.10:ENST00000627212.2:ENST00000308008.10:ENST00000515170.5:ENST00000510071.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	46	2	2.63247	2.843745	3.05502	0.0215745	0.00689519	0.123836	0.0717484
chr8	123014159	123014258	4040968	0	-	0.40404	(0.378,0.408]	chr8	368511	11	UTR3	UTR3:EXON_MRNA	DERL1	ENSG00000136986.10	ENST00000259512.9:ENST00000405944.7:ENST00000524119.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	46	2	2.63247	2.843745	3.05502	0.0215745	0.00689519	0.123836	0.0717484
chr1	29156003	29156102	410177	0	-	0.424242	(0.408,0.44]	chr1	49392	7	INTRON	INTRON	SRSF4	ENSG00000116350.18	ENST00000373795.7:ENST00000691479.1:ENST00000634348.1:ENST00000466448.4:ENST00000622143.1:ENST00000497015.5:ENST00000605204.1:ENST00000477193.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	108	2	2.00842	2.84373	3.67904	0.0108512	2.07254e-5	0.0873034	0.00353137
chr2	39775725	39775824	1104714	0	-	0.333333	(0.32,0.35]	chr2	118575	37	INTRON	INTRON	THUMPD2	ENSG00000138050.15	ENST00000505747.6:ENST00000378727.8:ENST00000530522.1:ENST00000510781.2:ENST00000403537.3:ENST00000531687.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	81	2	2.10695	2.84337	3.57979	0.0127483	0.00118589	0.0987441	0.0315652
chr7	10753592	10753692	3484316	0	-	0.33	(0.32,0.35]	chr7	325772	1917	INTRON	INTRON	MGC4859	ENSG00000283117.1	ENST00000634803.1	lncRNA	lncRNA	lncRNA	lncRNA	4	81	2	2.10695	2.84337	3.57979	0.0127483	0.00118589	0.0987441	0.0315652
chr16	66687445	66687544	6501817	0	-	0.373737	(0.35,0.378]	chr16	628968	505	INTRON	INTRON	CMTM4	ENSG00000183723.13	ENST00000394106.7:ENST00000330687.8:ENST00000563952.1	protein_coding	protein_coding	protein_coding	protein_coding	2	47	2	2.79643	2.84323	2.89003	0.013543	0.0122391	0.101363	0.0910127
chr3	38402480	38402580	1400052	0	+	0.37	(0.35,0.378]	chr3	146883	11	INTRON	INTRON	XYLB	ENSG00000093217.11	ENST00000207870.8:ENST00000650590.1:ENST00000424034.5:ENST00000649234.1:ENST00000472721.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	47	2	2.79643	2.84323	2.89003	0.013543	0.0122391	0.101363	0.0910127
chr19	3432917	3433017	7000292	0	+	0.6	(0.57,1]	chr19	694183	74	INTRON	INTRON	NFIC	ENSG00000141905.19	ENST00000641145.1:ENST00000589123.5:ENST00000395111.7:ENST00000586919.5:ENST00000341919.7:ENST00000443272.3:ENST00000590282.5	protein_coding	protein_coding	protein_coding	protein_coding	4	39	2	2.55379	2.843165	3.13254	0.00310655	0.0015786	0.0512344	0.0362091
chr2	167922333	167922432	1259026	0	-	0.585859	(0.57,1]	chr2	133340	212	INTRON	INTRON	B3GALT1-AS1	ENSG00000235335.3	ENST00000430546.2:ENST00000657553.1:ENST00000670221.1:ENST00000436982.2	lncRNA	lncRNA	lncRNA	lncRNA	4	39	2	2.55379	2.843165	3.13254	0.00310655	0.0015786	0.0512344	0.0362091
chr1	236601586	236601684	665747	0	-	0.387755	(0.378,0.408]	chr1	78964	16	INTRON	INTRON	HEATR1	ENSG00000119285.11	ENST00000366582.8:ENST00000366581.6	protein_coding	protein_coding	protein_coding	protein_coding	3	60	2	2.21238	2.843075	3.47377	0.0218124	0.00103087	0.11491	0.0294094
chr1	25433475	25433575	47972	0	+	0.38	(0.378,0.408]	chr1	5919	19	INTRON	INTRON	MACO1	ENSG00000204178.11	ENST00000399766.7:ENST00000374343.5:ENST00000647928.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	60	2	2.30628	2.8429900000000004	3.3797	0.0163339	0.00154501	0.101571	0.0362716
chr5	179618795	179618890	2779723	0	-	0.284211	(0.28,0.32]	chr5	262312	6	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HNRNPH1	ENSG00000169045.17	ENST00000329433.11:ENST00000393432.9:ENST00000356731.9:ENST00000442819.6:ENST00000502904.5:ENST00000514332.5:ENST00000515481.5:ENST00000510411.5:ENST00000510678.5:ENST00000519958.5:ENST00000514731.5:ENST00000521173.5:ENST00000503105.5:ENST00000504779.6:ENST00000520415.1:ENST00000518548.5:ENST00000508103.5:ENST00000506721.5:ENST00000523137.5:ENST00000505811.5:ENST00000510431.5:ENST00000519056.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	18	367	2	2.33154	2.84294	3.35434	1.77015e-4	1.82992e-5	0.0116105	0.00348924
chr7	152366070	152366170	3680594	0	-	0.39	(0.378,0.408]	chr7	341660	70	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000682301.1:ENST00000452749.2:ENST00000680867.1:ENST00000683800.1:ENST00000684278.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	62	2	1.88729	2.84293	3.79857	0.0532327	2.23525e-4	0.162538	0.0131533
chr19	10159157	10159257	7134494	0	-	0.46	(0.44,0.476]	chr19	719167	1	SS5_PROX	SS5_PROX:INTRON	DNMT1	ENSG00000130816.17	ENST00000340748.8:ENST00000359526.9:ENST00000592705.5:ENST00000679103.1:ENST00000677634.1:ENST00000676820.1:ENST00000677250.1:ENST00000677013.1:ENST00000677685.1:ENST00000677616.1:ENST00000676604.1:ENST00000678024.1:ENST00000676868.1:ENST00000677783.1:ENST00000678694.1:ENST00000676610.1:ENST00000678804.1:ENST00000679313.1:ENST00000677946.1:ENST00000585843.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	58	2	2.82351	2.84291	2.86231	0.012214	0.00191049	0.0910127	0.0403772
chr5	134711560	134711659	2490059	0	+	0.464646	(0.44,0.476]	chr5	237819	23	INTRON	INTRON	SEC24A	ENSG00000113615.13	ENST00000398844.7	protein_coding	protein_coding	protein_coding	protein_coding	3	58	2	2.82351	2.84291	2.86231	0.012214	0.00191049	0.0910127	0.0403772
chr6	85618517	85618617	3151198	0	-	0.32	(0.28,0.32]	chr6	293868	3	SS5_PROX	SS5_PROX:INTRON	ENSG00000271793:SYNCRIP	ENSG00000271793.2:ENSG00000135316.19	ENST00000682083.1:ENST00000683074.1:ENST00000681965.1:ENST00000682504.1:ENST00000682106.1:ENST00000683364.1:ENST00000683436.1:ENST00000684220.1:ENST00000683909.1:ENST00000684462.1:ENST00000616122.5:ENST00000678528.1:ENST00000676637.1:ENST00000677771.1:ENST00000355238.11:ENST00000678878.1:ENST00000677481.1:ENST00000677646.1:ENST00000676630.1:ENST00000678618.1:ENST00000676542.1:ENST00000677059.1:ENST00000444272.2:ENST00000678899.1:ENST00000369622.8:ENST00000678355.1:ENST00000676688.1:ENST00000677514.1:ENST00000678816.1:ENST00000678930.1:ENST00000678589.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	163	2	2.49865	2.8428500000000003	3.18705	0.00216019	1.0889e-4	0.0417866	0.00883972
chr16	85198862	85198962	6411817	0	+	0.54	(0.515,0.57]	chr16	615455	136	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	5	84	2	2.73258	2.842755	2.95293	0.00260192	2.71022e-4	0.0470772	0.0150944
chr22	19119730	19119830	7551988	0	-	0.41	(0.408,0.44]	chr22	771903	299	INTRON	INTRON	DGCR2	ENSG00000070413.20	ENST00000537045.5:ENST00000545799.5:ENST00000263196.12:ENST00000389262.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	17	292	2	2.36209	2.8427049999999996	3.32332	1.16818e-4	3.56908e-6	0.00929802	0.00135286
chr1	100396723	100396823	173072	0	+	0.41	(0.408,0.44]	chr1	18824	55	INTRON	INTRON	CDC14A	ENSG00000079335.20	ENST00000646665.1:ENST00000644844.1:ENST00000635056.2:ENST00000647005.1:ENST00000647203.1:ENST00000644676.1:ENST00000361544.11:ENST00000370124.8:ENST00000336454.5:ENST00000644813.1:ENST00000455467.6:ENST00000646563.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	108	2	2.82797	2.8426	2.85723	0.00211413	1.76514e-4	0.0415897	0.0115835
chr17	27586847	27586935	6582084	0	+	0.431818	(0.408,0.44]	chr17	639710	5	INTRON	INTRON	KSR1	ENSG00000141068.15	ENST00000644974.2:ENST00000398988.7:ENST00000268763.10:ENST00000509603.6:ENST00000644418.1:ENST00000398982.6:ENST00000577823.5:ENST00000581975.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	108	2	2.82797	2.8426	2.85723	0.00211413	1.76514e-4	0.0415897	0.0115835
chr2	172571324	172571423	920059	0	+	0.40404	(0.378,0.408]	chr2	101374	1	INTRON	INTRON	PDK1	ENSG00000152256.14	ENST00000392571.6:ENST00000410055.5:ENST00000282077.8:ENST00000466437.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	72	2	2.53602	2.84247	3.14892	0.00499984	0.0020933	0.0617433	0.0424943
chr7	116957799	116957895	3386028	0	+	0.333333	(0.32,0.35]	chr7	317120	7	INTRON	INTRON	ST7:ST7-OT4	ENSG00000004866.22:ENSG00000214188.9	ENST00000393446.6:ENST00000265437.9:ENST00000393451.7:ENST00000438863.5:ENST00000393449.5:ENST00000443979.5:ENST00000323984.8:ENST00000417919.5:ENST00000446490.5:ENST00000397750.7:ENST00000466018.5:ENST00000471110.5:ENST00000470996.4:ENST00000397751.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:nonsense_mediated_decay:lncRNA	5	92	2	1.98909	2.842455	3.69582	0.0108865	7.3931e-4	0.0923273	0.0249744
chr6	87226532	87226632	2913975	0	+	0.32	(0.28,0.32]	chr6	275311	27	INTRON	INTRON	ZNF292	ENSG00000188994.13	ENST00000369577.8:ENST00000518845.1:ENST00000339907.8:ENST00000496806.2	protein_coding	protein_coding	protein_coding	protein_coding	3	73	2	2.33381	2.842445	3.35108	0.0174951	0.00221345	0.104863	0.0435144
chr10	96575637	96575736	4674317	0	-	0.292929	(0.28,0.32]	chr10	430721	99	INTRON	INTRON	TM9SF3	ENSG00000077147.16	ENST00000371142.9:ENST00000649367.1:ENST00000443638.1:ENST00000464654.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	76	2	1.81582	2.8424300000000002	3.86904	0.068122	2.33993e-4	0.184298	0.0135358
chr7	123731919	123732019	3632490	0	-	0.32	(0.28,0.32]	chr7	337581	223	INTRON	INTRON	WASL	ENSG00000106299.8	ENST00000223023.5	protein_coding	protein_coding	protein_coding	protein_coding	3	76	2	1.81582	2.8424300000000002	3.86904	0.068122	2.33993e-4	0.184298	0.0135358
chr17	37354723	37354822	6762529	0	-	0.50505	(0.476,0.515]	chr17	664970	90	INTRON	INTRON	ACACA	ENSG00000278540.5	ENST00000616317.5:ENST00000614428.4:ENST00000613146.4:ENST00000615229.4:ENST00000621960.1:ENST00000617548.1:ENST00000616352.4:ENST00000614789.4:ENST00000612007.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:non_stop_decay:nonsense_mediated_decay	4	77	2	2.81076	2.84241	2.87406	0.00203568	0.00188729	0.0417667	0.0391691
chr7	131374224	131374323	3416906	0	+	0.464646	(0.44,0.476]	chr7	319187	459	INTRON	INTRON	MKLN1	ENSG00000128585.18	ENST00000421797.6:ENST00000416992.6:ENST00000429546.5:ENST00000446815.5:ENST00000494286.5:ENST00000352689.11:ENST00000494785.5:ENST00000458153.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	70	2	2.6062	2.84241	3.07862	0.0060153	0.00148054	0.0674604	0.0353633
chr2	197983357	197983457	970890	0	+	0.49	(0.476,0.515]	chr2	104858	1727	INTRON	INTRON	PLCL1	ENSG00000115896.16	ENST00000428675.6:ENST00000435320.1:ENST00000487695.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	46	2	1.71266	2.8423350000000003	3.97201	0.030904	0.0293304	0.143385	0.128055
chr6	15257358	15257458	2823059	0	+	0.34	(0.32,0.35]	chr6	265190	80	INTRON	INTRON	JARID2	ENSG00000008083.14	ENST00000341776.7:ENST00000397311.4	protein_coding	protein_coding	protein_coding	protein_coding	4	80	2	2.2643	2.8422799999999997	3.42026	0.00712852	0.00219805	0.0756118	0.0417893
chr2	61324676	61324775	1129068	0	-	0.535354	(0.515,0.57]	chr2	121386	50	INTRON	INTRON	USP34	ENSG00000115464.15	ENST00000398571.7	protein_coding	protein_coding	protein_coding	protein_coding	3	50	2	2.32836	2.842225	3.35609	0.0126662	0.00174131	0.0982897	0.0375363
chr7	12389758	12389858	3485299	0	-	0.36	(0.35,0.378]	chr7	325963	4	SS3_PROX	SS3_PROX:INTRON	VWDE	ENSG00000146530.15	ENST00000275358.8:ENST00000452576.6:ENST00000521169.5:ENST00000326715.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	98	2	1.87733	2.84217	3.80701	0.012522	2.34133e-4	0.0925829	0.0135358
chr7	151502163	151502262	3674748	0	-	0.484848	(0.476,0.515]	chr7	341207	36	INTRON	INTRON	RHEB	ENSG00000106615.10	ENST00000262187.10:ENST00000472642.5:ENST00000478470.5:ENST00000496004.5:ENST00000470370.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	180	2	2.49114	2.842165	3.19319	7.5016e-4	7.3656e-6	0.0251179	0.00192905
chr7	22664587	22664672	3500024	0	-	0.364706	(0.35,0.378]	chr7	326679	3	INTRON	INTRON	STEAP1B	ENSG00000105889.16	ENST00000650428.1:ENST00000649402.1:ENST00000414116.1	protein_coding	processed_transcript	protein_coding	processed_transcript	3	65	2	2.17079	2.842135	3.51348	0.0225978	0.00136294	0.124921	0.0336321
chr2	84994339	84994439	820495	0	+	0.35	(0.32,0.35]	chr2	91419	217	INTRON	INTRON	KCMF1	ENSG00000176407.18	ENST00000456682.1:ENST00000409785.9:ENST00000428691.5:ENST00000453448.1	protein_coding	protein_coding	protein_coding	protein_coding	3	69	2	2.68921	2.84208	2.99495	0.0230336	0.00102621	0.118056	0.0294094
chr7	152153049	152153145	3678388	0	-	0.25	[0,0.28]	chr7	341396	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	KMT2C	ENSG00000055609.21	ENST00000360104.8:ENST00000262189.11:ENST00000418061.2:ENST00000680877.1:ENST00000424877.6:ENST00000679560.1:ENST00000682040.1:ENST00000683120.1:ENST00000681923.1:ENST00000679393.1:ENST00000683200.1:ENST00000680029.1:ENST00000683337.1:ENST00000683178.1:ENST00000683502.1:ENST00000684261.1:ENST00000682283.1:ENST00000473186.5:ENST00000684649.1:ENST00000679882.1:ENST00000684069.1:ENST00000485241.2:ENST00000684330.1:ENST00000683886.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	189	2	2.47413	2.8419600000000003	3.20979	0.00100022	6.87728e-4	0.0288906	0.0239277
chr5	123409031	123409131	2710706	0	-	0.33	(0.32,0.35]	chr5	255026	49	INTRON	INTRON	CEP120	ENSG00000168944.17	ENST00000306467.10:ENST00000306481.11:ENST00000328236.10:ENST00000674667.1:ENST00000674620.1:ENST00000675814.1:ENST00000675330.1:ENST00000675104.1:ENST00000675686.1:ENST00000675442.1:ENST00000508442.7:ENST00000674684.1:ENST00000508138.5:ENST00000513565.6:ENST00000675444.1:ENST00000503049.2:ENST00000675409.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	67	2	2.4053	2.84194	3.27858	0.0108284	0.00368368	0.0920575	0.0535094
chr15	50600882	50600981	6172403	0	-	0.414141	(0.408,0.44]	chr15	588282	12	INTRON	INTRON	TRPM7	ENSG00000092439.16	ENST00000646667.1:ENST00000560955.5	protein_coding	protein_coding	protein_coding	protein_coding	3	61	2	1.81572	2.8419	3.86808	0.0626779	1.49394e-4	0.175915	0.0106137
chr3	177186979	177187078	1872344	0	-	0.575758	(0.57,1]	chr3	187438	157	INTRON	INTRON	TBL1XR1	ENSG00000177565.18	ENST00000457928.7:ENST00000430069.5:ENST00000673974.1:ENST00000352800.10:ENST00000422442.6:ENST00000428970.5:ENST00000424913.5:ENST00000437738.5:ENST00000431421.5:ENST00000635794.1:ENST00000630796.2:ENST00000450267.5:ENST00000630833.2:ENST00000431674.5:ENST00000422066.5:ENST00000443315.5:ENST00000627825.2:ENST00000427349.5:ENST00000413084.5:ENST00000637137.1:ENST00000491623.2:ENST00000637544.1:ENST00000636187.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	23	202	2	2.57866	2.841885	3.10511	5.0541e-6	1.12331e-7	0.00166411	1.48683e-4
chr18	9118656	9118740	6868755	0	+	0.392857	(0.378,0.408]	chr18	680516	4	INTRON	INTRON	NDUFV2	ENSG00000178127.13	ENST00000318388.11:ENST00000400033.1:ENST00000474350.5:ENST00000483511.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	109	2	2.07218	2.8418799999999997	3.61158	0.00201197	8.34292e-4	0.0414778	0.0266389
chr6	149320068	149320166	2994735	0	+	0.44898	(0.44,0.476]	chr6	280208	9	INTRON	INTRON	TAB2	ENSG00000055208.19	ENST00000606202.1:ENST00000636456.1:ENST00000637181.2:ENST00000461481.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	88	2	2.17407	2.841805	3.50954	0.00272014	0.00116647	0.0481508	0.0312127
chr21	39265419	39265519	7465049	0	-	0.25	[0,0.28]	chr21	760507	4	SS3_PROX	SS3_PROX:INTRON	BRWD1	ENSG00000185658.14	ENST00000333229.6:ENST00000342449.8:ENST00000380800.7:ENST00000430093.5:ENST00000445245.5:ENST00000445668.5:ENST00000412604.1:ENST00000455867.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	163	2	1.98988	2.841735	3.69359	0.00356891	0.00122246	0.0548435	0.0320622
chr6	109378371	109378471	3185874	0	-	0.45	(0.44,0.476]	chr6	296675	4	SS3_PROX	SS3_PROX:INTRON	CD164	ENSG00000135535.17	ENST00000310786.10:ENST00000413644.6:ENST00000504373.2:ENST00000324953.9:ENST00000275080.11:ENST00000499860.6:ENST00000512821.5:ENST00000506649.5:ENST00000512212.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	11	205	2	2.34769	2.8417000000000003	3.33571	0.00155283	1.14568e-6	0.0358949	6.1522e-4
chr12	101714503	101714574	5203182	0	+	0.43662	(0.408,0.44]	chr12	492669	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CHPT1	ENSG00000111666.11	ENST00000550385.1:ENST00000229266.8:ENST00000549872.5:ENST00000552351.5:ENST00000549128.5:ENST00000552215.5:ENST00000552329.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	120	2	1.85142	2.8416	3.83178	0.0127811	7.89896e-6	0.0926667	0.00201919
chr11	2948926	2949026	4891538	0	-	0.44	(0.408,0.44]	chr11	458262	3	SS5_PROX	SS5_PROX:INTRON	NAP1L4	ENSG00000205531.13	ENST00000620138.4:ENST00000380542.9:ENST00000469805.5:ENST00000469089.5:ENST00000526115.5:ENST00000492594.6:ENST00000526023.5:ENST00000492685.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	96	2	1.95554	2.8415749999999997	3.72761	0.00485149	4.662e-4	0.0640618	0.0199613
chr16	23913942	23914042	6324540	0	+	0.44	(0.408,0.44]	chr16	605701	202	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000498739.1	protein_coding	protein_coding	protein_coding	protein_coding	13	198	2	2.19597	2.8415600000000003	3.48715	4.15423e-4	2.08648e-5	0.0182269	0.00372321
chr19	55387289	55387369	7101077	0	+	0.4875	(0.476,0.515]	chr19	712401	1	UTR3	UTR3:EXON_MRNA:INTRON	RPL28	ENSG00000108107.15	ENST00000344063.7:ENST00000558815.5:ENST00000428193.6:ENST00000560583.5:ENST00000560055.5:ENST00000560881.5:ENST00000559463.5:ENST00000426763.3:ENST00000558131.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	65	2	2.65268	2.841475	3.03027	0.0201975	9.53446e-4	0.121243	0.0282335
chr12	121310217	121310305	5436741	0	-	0.375	(0.35,0.378]	chr12	519845	5	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	ANAPC5	ENSG00000089053.13	ENST00000261819.8:ENST00000422342.2:ENST00000535641.5:ENST00000541887.5:ENST00000534976.5:ENST00000441917.6:ENST00000539079.5:ENST00000544314.5:ENST00000535482.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	84	2	2.59656	2.841435	3.08631	0.00638551	6.13845e-4	0.0693551	0.0223951
chr6	85512602	85512701	3150075	0	-	0.373737	(0.35,0.378]	chr6	293675	44	EXON_MRNA	EXON_MRNA:INTRON	ENSG00000271793:SNX14	ENSG00000271793.2:ENSG00000135317.14	ENST00000682083.1:ENST00000683074.1:ENST00000681965.1:ENST00000682171.1:ENST00000684150.1:ENST00000683785.1:ENST00000682497.1:ENST00000684647.1:ENST00000683643.1:ENST00000682023.1:ENST00000682022.1:ENST00000683542.1:ENST00000683126.1:ENST00000683857.1:ENST00000683898.1:ENST00000682854.1:ENST00000682491.1:ENST00000682174.1:ENST00000684239.1:ENST00000682939.1:ENST00000684570.1:ENST00000682057.1:ENST00000682878.1:ENST00000683880.1:ENST00000684422.1:ENST00000682504.1:ENST00000683726.1:ENST00000684680.1:ENST00000683196.1:ENST00000683458.1:ENST00000683803.1:ENST00000684281.1:ENST00000682991.1:ENST00000683754.1:ENST00000683481.1:ENST00000682455.1:ENST00000682034.1:ENST00000684451.1:ENST00000683583.1:ENST00000682776.1:ENST00000683873.1:ENST00000683878.1:ENST00000683195.1:ENST00000682995.1:ENST00000682374.1:ENST00000683698.1:ENST00000682454.1:ENST00000682694.1:ENST00000682412.1:ENST00000514801.2:ENST00000682926.1:ENST00000682682.1:ENST00000418862.2:ENST00000346348.7:ENST00000314673.8:ENST00000682633.1:ENST00000683085.1:ENST00000682688.1:ENST00000684319.1:ENST00000683577.1:ENST00000682709.1:ENST00000684299.1:ENST00000682133.1:ENST00000682594.1:ENST00000683473.1:ENST00000682106.1:ENST00000683364.1:ENST00000683436.1:ENST00000684220.1:ENST00000683909.1:ENST00000684118.1:ENST00000681981.1:ENST00000682738.1:ENST00000509338.6:ENST00000684717.1:ENST00000682660.1:ENST00000683073.1:ENST00000515216.6:ENST00000684581.1:ENST00000683763.1:ENST00000683479.1:ENST00000682464.1:ENST00000684108.1:ENST00000682514.1:ENST00000684017.1:ENST00000684273.1:ENST00000513865.5:ENST00000505648.5:ENST00000508980.5:ENST00000369627.6:ENST00000503491.5:ENST00000508658.6:ENST00000683097.1:ENST00000683541.1:ENST00000683759.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	84	2	2.59656	2.841435	3.08631	0.00638551	6.13845e-4	0.0693551	0.0223951
chr6	17652525	17652624	3065658	0	-	0.242424	[0,0.28]	chr6	284824	2	INTRON	INTRON	NUP153	ENSG00000124789.12	ENST00000613258.4:ENST00000537253.5:ENST00000262077.3	protein_coding	protein_coding	protein_coding	protein_coding	9	160	2	1.83908	2.841425	3.84377	0.00678547	6.90098e-4	0.0743502	0.0240759
chr7	849267	849343	3268811	0	+	0.552632	(0.515,0.57]	chr7	303588	3	SS3_PROX	SS3_PROX:INTRON	SUN1	ENSG00000164828.18	ENST00000452783.6:ENST00000389574.7:ENST00000401592.6:ENST00000413171.6:ENST00000405266.5:ENST00000340926.7:ENST00000425407.6:ENST00000450881.5:ENST00000419312.5:ENST00000429178.5:ENST00000433212.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	118	2	2.26301	2.841395	3.41978	6.0763e-4	1.03805e-4	0.0223951	0.00915599
chr20	47216787	47216886	7348092	0	-	0.333333	(0.32,0.35]	chr20	749229	37	INTRON	INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000467200.6:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4	protein_coding	protein_coding	protein_coding	protein_coding	16	330	2	2.55821	2.841375	3.12454	1.95729e-4	4.89701e-6	0.0128109	0.00150861
chr9	135948703	135948802	4372442	0	-	0.626263	(0.57,1]	chr9	402541	4	INTRON	INTRON	UBAC1	ENSG00000130560.9	ENST00000371756.4:ENST00000478485.1:ENST00000486258.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	111	2	2.51469	2.841265	3.16784	1.6863e-4	1.06752e-6	0.0119215	5.92337e-4
chr9	123254648	123254748	4340342	0	-	0.28	[0,0.28]	chr9	398963	173	INTRON	INTRON	STRBP	ENSG00000165209.19	ENST00000348403.10:ENST00000360998.3:ENST00000407982.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	99	2	2.31716	2.841025	3.36489	0.00702731	0.00388509	0.0754576	0.0544269
chr3	9993111	9993211	1362032	0	+	0.27	[0,0.28]	chr3	143397	1	SS5_PROX	SS5_PROX:INTRON	EMC3-AS1	ENSG00000180385.9	ENST00000692142.1:ENST00000366264.6:ENST00000693066.1:ENST00000326237.3:ENST00000440568.1:ENST00000438698.1:ENST00000424904.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	6	158	2	2.45328	2.8410149999999996	3.22875	0.00336656	5.02502e-4	0.0516405	0.020217099999999998
chr1	29050120	29050219	60325	0	+	0.474747	(0.44,0.476]	chr1	7705	88	INTRON	INTRON	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000647918.1:ENST00000646800.1:ENST00000644342.1:ENST00000646189.1:ENST00000482464.6:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000646260.1:ENST00000373798.5:ENST00000644600.1:ENST00000649674.1:ENST00000643173.1:ENST00000343067.9:ENST00000644780.1:ENST00000650265.1:ENST00000648181.1:ENST00000643604.1:ENST00000648891.1:ENST00000373797.2:ENST00000349460.9:ENST00000645184.1:ENST00000645111.1:ENST00000643302.1:ENST00000645999.1:ENST00000642643.1:ENST00000636666.1:ENST00000644848.1:ENST00000644470.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	43	2	2.5364	2.840995	3.14559	0.0309324	0.00384923	0.13151	0.0562562
chr16	67779074	67779173	6505408	0	-	0.454545	(0.44,0.476]	chr16	629654	66	INTRON	INTRON	RANBP10	ENSG00000141084.12	ENST00000317506.8:ENST00000448631.6:ENST00000602506.5:ENST00000602677.5:ENST00000602525.5:ENST00000602638.5:ENST00000602815.5:ENST00000602887.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	43	2	2.5364	2.840995	3.14559	0.0309324	0.00384923	0.13151	0.0562562
chr2	96621455	96621554	1181022	0	-	0.464646	(0.44,0.476]	chr2	126496	13	INTRON	INTRON	KANSL3	ENSG00000114982.19	ENST00000354204.10:ENST00000431828.6:ENST00000487070.5:ENST00000447759.5:ENST00000420155.5:ENST00000670907.1:ENST00000666923.1:ENST00000597150.5:ENST00000444759.5:ENST00000452268.5:ENST00000425656.5:ENST00000448075.1:ENST00000451819.5:ENST00000416138.1:ENST00000418735.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	43	2	2.5364	2.840995	3.14559	0.0309324	0.00384923	0.13151	0.0562562
chr18	36153154	36153253	6891668	0	+	0.333333	(0.32,0.35]	chr18	683023	64	INTRON	INTRON	ELP2	ENSG00000134759.14	ENST00000351393.10:ENST00000442325.6:ENST00000358232.11:ENST00000423854.6:ENST00000539560.5:ENST00000350494.10:ENST00000542824.5:ENST00000540799.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	67	2	2.2664	2.84097	3.41554	0.0199969	0.00153152	0.109608	0.0361484
chr2	55663913	55664012	1125455	0	-	0.545455	(0.515,0.57]	chr2	120771	15	INTRON	INTRON	PNPT1	ENSG00000138035.15	ENST00000447944.7:ENST00000415374.5:ENST00000260604.8:ENST00000415489.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	79	2	2.7614899999999998	2.84097	2.92045	0.00128922	6.09302e-4	0.0328334	0.0223951
chr4	150934661	150934761	2270965	0	-	0.52	(0.515,0.57]	chr4	220921	52	INTRON	INTRON	LRBA	ENSG00000198589.14	ENST00000357115.9:ENST00000651943.2:ENST00000510413.5:ENST00000651035.1:ENST00000507224.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	79	2	2.7614899999999998	2.84097	2.92045	0.00128922	6.09302e-4	0.0328334	0.0223951
chr5	55950370	55950469	2623147	0	-	0.50505	(0.476,0.515]	chr5	249208	10	INTRON	INTRON	IL6ST	ENSG00000134352.20	ENST00000381298.7:ENST00000336909.9:ENST00000381287.8:ENST00000651614.1:ENST00000503773.6:ENST00000502326.7:ENST00000381294.7:ENST00000583149.1:ENST00000381293.6:ENST00000381286.7:ENST00000522633.2:ENST00000423954.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	69	2	2.05714	2.84089	3.62464	0.0156961	5.079e-4	0.101453	0.0202328
chr2	39760830	39760930	1104558	0	-	0.26	[0,0.28]	chr2	118546	1	SS5_PROX	SS5_PROX:INTRON	THUMPD2	ENSG00000138050.15	ENST00000460072.5:ENST00000505747.6:ENST00000378727.8:ENST00000530522.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	83	2	2.30641	2.8408550000000004	3.3753	0.0213596	0.00242466	0.113755	0.0454587
chr1	167639426	167639522	247049	0	+	0.385417	(0.378,0.408]	chr1	29425	6	INTRON	INTRON	RCSD1	ENSG00000198771.11	ENST00000537350.5:ENST00000361496.3:ENST00000367854.8:ENST00000475127.5:ENST00000472038.1:ENST00000461790.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	60	2	2.16303	2.840815	3.5186	0.0252473	8.45009e-4	0.12011	0.0263813
chr2	71339138	71339237	807084	0	+	0.474747	(0.44,0.476]	chr2	90134	42	INTRON	INTRON	ZNF638	ENSG00000075292.19	ENST00000494621.5:ENST00000410075.5:ENST00000466975.5:ENST00000466330.5:ENST00000437658.2:ENST00000464375.5:ENST00000475743.1:ENST00000409544.5:ENST00000455226.5:ENST00000454278.5:ENST00000264447.9:ENST00000454122.1:ENST00000417778.5:ENST00000487707.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	161	2	2.79021	2.840815	2.89142	1.92791e-4	9.80615e-5	0.0127226	0.00832973
chr1	42954454	42954554	433104	0	-	0.49	(0.476,0.515]	chr1	52505	1	SS3_PROX	SS3_PROX:INTRON	SLC2A1	ENSG00000117394.24	ENST00000426263.10:ENST00000630287.2:ENST00000675112.1:ENST00000674765.1:ENST00000625233.2:ENST00000372500.4:ENST00000415851.6:ENST00000630821.1:ENST00000460369.3:ENST00000676097.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	92	2	2.38129	2.840635	3.29998	0.00474233	1.88247e-4	0.0600445	0.011951
chr7	66711566	66711666	3325183	0	+	0.45	(0.44,0.476]	chr7	309221	260	INTRON	INTRON	RABGEF1	ENSG00000154710.18	ENST00000607882.5	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	2	43	2	2.81896	2.840635	2.86231	0.012214	0.0120766	0.0962311	0.0910127
chr3	32548359	32548459	1649896	0	-	0.48	(0.476,0.515]	chr3	169157	20	INTRON	INTRON	DYNC1LI1	ENSG00000144635.9	ENST00000273130.9:ENST00000481915.5:ENST00000432458.6:ENST00000413350.5:ENST00000424991.1:ENST00000475193.1:ENST00000474077.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	45	2	2.23335	2.840595	3.44784	0.0634557	0.00113238	0.177047	0.0308465
chr17	57598644	57598744	6636188	0	+	0.44	(0.408,0.44]	chr17	648089	13	INTRON	INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000674961.1:ENST00000675656.1:ENST00000322684.7:ENST00000442934.6:ENST00000579180.2:ENST00000579205.5:ENST00000579505.5:ENST00000674898.1:ENST00000577241.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	58	2	2.26792	2.8405750000000003	3.41323	0.0179973	0.00129989	0.106756	0.0333764
chr2	26364831	26364885	715200	0	+	0.462963	(0.44,0.476]	chr2	82580	1	CDS	CDS:EXON_MRNA	SELENOI	ENSG00000138018.19	ENST00000442141.5:ENST00000260585.12:ENST00000447170.1	protein_coding	protein_coding	protein_coding	protein_coding	4	79	2	2.33899	2.84054	3.34209	0.0142027	1.47653e-4	0.0959987	0.0105526
chr7	139366900	139366999	3437658	0	+	0.252525	[0,0.28]	chr7	320318	62	INTRON	INTRON	LUC7L2:FMC1-LUC7L2	ENSG00000146963.18:ENSG00000269955.2	ENST00000541170.7:ENST00000541515.3:ENST00000608368.5:ENST00000619796.4:ENST00000354926.9:ENST00000435096.1:ENST00000456182.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	51	1205	2	2.59939	2.84049	3.08159	1.30467e-5	1.20464e-5	0.00286967	0.00257756
chr12	132827902	132828002	5450217	0	-	0.38	(0.378,0.408]	chr12	522127	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GOLGA3:CHFR	ENSG00000090615.16:ENSG00000072609.18	ENST00000204726.9:ENST00000450791.8:ENST00000688114.1:ENST00000691696.1:ENST00000691636.1:ENST00000690897.1:ENST00000456883.7:ENST00000545875.4:ENST00000688251.1:ENST00000686751.1:ENST00000685580.1:ENST00000687165.1:ENST00000692384.1:ENST00000685120.1:ENST00000689813.1:ENST00000693112.1:ENST00000685450.1:ENST00000534967.2:ENST00000537317.2:ENST00000541341.5:ENST00000692289.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	18	327	2	2.4462	2.840485	3.23477	1.92549e-4	7.96123e-7	0.0127226	5.03146e-4
chr7	128000066	128000166	3405906	0	+	0.27	[0,0.28]	chr7	318188	21	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000486037.1:ENST00000484767.5:ENST00000470723.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	99	2	2.37401	2.8404800000000003	3.30695	0.00568456	0.00469836	0.0678837	0.0600108
chr1	84652352	84652441	496378	0	-	0.449438	(0.44,0.476]	chr1	58831	5	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	SSX2IP	ENSG00000117155.17	ENST00000342203.8:ENST00000437941.6:ENST00000481102.5:ENST00000476905.6:ENST00000605755.5:ENST00000603677.1:ENST00000490476.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	127	2	2.68583	2.84043	2.99503	3.91317e-4	2.98386e-4	0.0178091	0.0160416
chr15	58634253	58634352	6192348	0	-	0.414141	(0.408,0.44]	chr15	589923	5	INTRON	INTRON	ADAM10	ENSG00000137845.15	ENST00000260408.8:ENST00000402627.5:ENST00000561288.1:ENST00000396136.6:ENST00000559053.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	58	2	2.78289	2.84042	2.89795	0.0110735	0.0022785	0.0873897	0.0437013
chr17	81892106	81892206	6691430	0	+	0.56	(0.515,0.57]	chr17	654248	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ANAPC11	ENSG00000141552.18	ENST00000571570.5:ENST00000572639.5:ENST00000612413.4:ENST00000579978.5:ENST00000571024.6:ENST00000344877.10:ENST00000577425.5:ENST00000582222.5:ENST00000574924.6:ENST00000572851.6:ENST00000357385.7:ENST00000584314.5:ENST00000571874.6:ENST00000578550.5:ENST00000577747.5:ENST00000579133.5:ENST00000392376.7:ENST00000584197.5:ENST00000583839.1	protein_coding	protein_coding	protein_coding	protein_coding	3	50	2	2.48902	2.8404	3.19178	0.00760558	0.00289534	0.0749571	0.0494641
chr19	18558826	18558921	7033094	0	+	0.568421	(0.515,0.57]	chr19	700892	1	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS3_PROX:SS5_PROX:INTRON	KXD1	ENSG00000105700.11	ENST00000539106.5:ENST00000540691.5:ENST00000600372.5:ENST00000600796.1:ENST00000222307.9:ENST00000601630.5:ENST00000599000.5:ENST00000595073.5:ENST00000600654.5:ENST00000596785.5:ENST00000599319.5:ENST00000597438.5:ENST00000596244.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	50	2	2.48902	2.8404	3.19178	0.00760558	0.00289534	0.0749571	0.0494641
chrX	153761608	153761707	7911313	0	-	0.424242	(0.408,0.44]	chrX	805126	6	INTRON	INTRON	PLXNB3-AS1	ENSG00000232725.1	ENST00000434284.1:ENST00000416854.1	lncRNA	lncRNA	lncRNA	lncRNA	8	138	2	2.4582	2.84039	3.2225799999999998	5.79177e-4	2.79412e-4	0.022329	0.0148832
chr5	112160824	112160924	2451538	0	+	0.53	(0.515,0.57]	chr5	234897	4	EXON_LNCRNA	EXON_LNCRNA	EPB41L4A-AS1	ENSG00000224032.8	ENST00000663232.1:ENST00000427306.3:ENST00000508590.2:ENST00000688370.1:ENST00000442823.3:ENST00000690733.1:ENST00000413221.7	lncRNA	lncRNA	lncRNA	lncRNA	18	266	2	2.38535	2.84033	3.29531	7.45156e-5	9.54033e-7	0.00721019	6.06868e-4
chrX	16168280	16168380	7768248	0	-	0.49	(0.476,0.515]	chrX	793931	2	SS5_PROX	SS5_PROX:INTRON	ENSG00000238178	ENSG00000238178.7	ENST00000435789.1	lncRNA	lncRNA	lncRNA	lncRNA	13	223	2	2.60258	2.840195	3.07781	6.47784e-5	2.88477e-5	0.00667579	0.00446213
chr16	29456085	29456185	6335113	0	+	0.46	(0.44,0.476]	chr16	606763	2	SS5_PROX	SS5_PROX:INTRON	SLX1B:SLX1B-SULT1A4	ENSG00000181625.17:ENSG00000260280.5	ENST00000330181.9:ENST00000565219.1:ENST00000351581.4:ENST00000344620.10:ENST00000564950.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron	4	79	2	2.64669	2.840095	3.0335	0.0040295	9.65686e-4	0.0578376	0.0282401
chrX	110014753	110014853	7700154	0	+	0.34	(0.32,0.35]	chrX	788130	102	INTRON	INTRON	TMEM164	ENSG00000157600.12	ENST00000372072.7:ENST00000471255.5:ENST00000372073.5:ENST00000372068.7:ENST00000288381.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	124	2	2.19707	2.8400600000000003	3.48305	0.00625395	8.91094e-5	0.0684171	0.00793468
chr1	108953969	108954069	519082	0	-	0.42	(0.408,0.44]	chr1	60923	2	SS5_PROX	SS5_PROX:INTRON	CLCC1	ENSG00000121940.17	ENST00000690509.1:ENST00000687328.1:ENST00000685014.1:ENST00000685540.1:ENST00000686576.1:ENST00000688070.1:ENST00000691513.1:ENST00000686821.1:ENST00000692511.1:ENST00000689479.1:ENST00000687646.1:ENST00000687998.1:ENST00000687226.1:ENST00000693336.1:ENST00000689991.1:ENST00000687591.1:ENST00000691777.1:ENST00000690756.1:ENST00000688778.1:ENST00000685104.1:ENST00000689103.1:ENST00000687734.1:ENST00000686434.1:ENST00000685497.1:ENST00000691342.1:ENST00000686776.1:ENST00000692342.1:ENST00000689351.1:ENST00000692584.1:ENST00000692775.1:ENST00000687134.1:ENST00000675018.1:ENST00000690781.1:ENST00000691556.1:ENST00000689189.1:ENST00000687099.1:ENST00000685791.1:ENST00000687865.1:ENST00000687449.1:ENST00000688285.1:ENST00000686817.1:ENST00000369968.7:ENST00000674992.1:ENST00000675001.1:ENST00000369969.7:ENST00000356970.6:ENST00000688610.1:ENST00000675128.1:ENST00000693089.1:ENST00000675571.1:ENST00000675650.1:ENST00000369970.8:ENST00000674561.2:ENST00000675654.1:ENST00000675790.1:ENST00000675584.1:ENST00000692795.1:ENST00000691731.1:ENST00000689359.1:ENST00000676392.2:ENST00000676391.2:ENST00000676454.1:ENST00000674849.1:ENST00000675956.1:ENST00000302500.5:ENST00000675508.1:ENST00000688168.1:ENST00000693673.1:ENST00000692404.1:ENST00000686078.1:ENST00000690874.1:ENST00000692732.1:ENST00000685628.1:ENST00000676306.1:ENST00000676059.2:ENST00000674527.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	69	2	2.3494	2.8400350000000003	3.33067	0.00462504	0.0024459	0.062717	0.0445752
chr9	133160822	133160894	4369561	0	-	0.430556	(0.408,0.44]	chr9	402002	2	INTRON	INTRON	GBGT1	ENSG00000148288.13	ENST00000372040.9:ENST00000372043.7:ENST00000470431.5:ENST00000472281.5:ENST00000540636.6:ENST00000646215.1:ENST00000372038.7:ENST00000644196.1:ENST00000372036.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	102	2	2.64829	2.839985	3.03168	0.00400062	2.56148e-4	0.057767	0.0148345
chr12	122079865	122079965	5239873	0	+	0.59	(0.57,1]	chr12	497496	2	INTRON	INTRON	MLXIP	ENSG00000175727.14	ENST00000319080.12	protein_coding	protein_coding	protein_coding	protein_coding	4	41	2	2.66305	2.8398849999999998	3.01672	0.00327879	5.94133e-4	0.0509077	0.0221865
chr15	43474965	43475064	6161660	0	-	0.343434	(0.32,0.35]	chr15	586759	2	SS3_PROX	SS3_PROX:INTRON	TP53BP1	ENSG00000067369.14	ENST00000382044.9:ENST00000263801.7:ENST00000382039.7:ENST00000450115.6:ENST00000572085.5:ENST00000413546.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	36	2	1.61669	2.83984	4.06299	0.0578816	0.0559439	0.188651	0.165463
chr2	176330760	176330860	925835	0	+	0.33	(0.32,0.35]	chr2	101719	1	SS5_PROX	SS5_PROX:INTRON	MTX2	ENSG00000128654.14	ENST00000420864.5:ENST00000249442.11:ENST00000443241.5:ENST00000452865.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	36	2	1.61669	2.83984	4.06299	0.0578816	0.0559439	0.188651	0.165463
chr8	37875722	37875822	3935706	0	-	0.32	(0.28,0.32]	chr8	360568	4	SS3_PROX	SS3_PROX:INTRON	RAB11FIP1	ENSG00000156675.16	ENST00000330843.9:ENST00000287263.8:ENST00000522727.5:ENST00000524118.1	protein_coding	protein_coding	protein_coding	protein_coding	3	72	2	2.59504	2.83983	3.08462	0.0078976	0.00582473	0.076155	0.0687439
chr9	124716007	124716107	4348662	0	-	0.5	(0.476,0.515]	chr9	399255	1203	INTRON	INTRON	NR6A1	ENSG00000148200.17	ENST00000487099.7:ENST00000373584.7:ENST00000416460.6:ENST00000344523.8	protein_coding	protein_coding	protein_coding	protein_coding	8	145	2	2.81288	2.8397949999999996	2.86671	2.11053e-4	1.95709e-4	0.0132122	0.0122528
chr1	65383493	65383592	136839	0	+	0.484848	(0.476,0.515]	chr1	15382	36	INTRON	INTRON	DNAJC6	ENSG00000116675.16	ENST00000494710.6:ENST00000263441.11:ENST00000395325.7:ENST00000371069.5	protein_coding	protein_coding	protein_coding	protein_coding	4	69	2	1.97402	2.839775	3.70553	0.0206778	3.44823e-4	0.110999	0.0165103
chr1	32843187	32843284	66828	0	+	0.340206	(0.32,0.35]	chr1	8573	1	INTRON	INTRON	S100PBP	ENSG00000116497.18	ENST00000373476.5:ENST00000373475.10	protein_coding	protein_coding	protein_coding	protein_coding	3	67	2	2.30731	2.8397050000000004	3.3721	0.0176772	0.00182912	0.10525	0.0396683
chr14	30992073	30992173	5857530	0	-	0.45	(0.44,0.476]	chr14	556508	277	INTRON	INTRON	STRN3	ENSG00000196792.12	ENST00000355683.9:ENST00000357479.10:ENST00000555358.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	92	2	2.45747	2.839695	3.22192	0.00360821	6.55527e-4	0.0533855	0.0232396
chr17	63760413	63760513	6811845	0	-	0.44	(0.408,0.44]	chr17	673167	1	SS5_PROX	SS5_PROX:INTRON	CCDC47	ENSG00000108588.15	ENST00000225726.10:ENST00000403162.7:ENST00000582252.1:ENST00000582331.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	43	2	2.6542	2.839665	3.02513	0.0227514	0.0059965	0.117618	0.0700606
chr18	23560230	23560313	6958694	0	-	0.433735	(0.408,0.44]	chr18	688362	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	NPC1	ENSG00000141458.13	ENST00000269228.10:ENST00000591051.1:ENST00000540608.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	43	2	2.6542	2.839665	3.02513	0.0227514	0.0059965	0.117618	0.0700606
chr1	52487211	52487310	457897	0	-	0.414141	(0.408,0.44]	chr1	55040	49	INTRON	INTRON	TUT4	ENSG00000134744.14	ENST00000371544.7:ENST00000257177.9:ENST00000528642.5:ENST00000484723.6:ENST00000371541.5:ENST00000473856.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	70	2	2.08376	2.83966	3.59556	0.0129886	8.33275e-4	0.0991656	0.0266389
chr20	3216386	3216482	7224355	0	+	0.479167	(0.476,0.515]	chr20	734119	7	INTRON	INTRON	ITPA	ENSG00000125877.13	ENST00000483354.5:ENST00000460676.5:ENST00000490838.6:ENST00000380113.8:ENST00000609835.5:ENST00000460550.5:ENST00000455664.6:ENST00000399838.3:ENST00000461029.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	45	2	2.47949	2.83962	3.19975	0.0326974	0.00383299	0.145164	0.0542786
chr12	95507928	95508027	5193362	0	+	0.414141	(0.408,0.44]	chr12	491171	34	INTRON	INTRON	METAP2	ENSG00000111142.14	ENST00000535095.5:ENST00000546753.5:ENST00000261220.13:ENST00000323666.10:ENST00000550777.5:ENST00000551840.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	43	2	2.71911	2.8395900000000003	2.96007	0.0189489	0.00753901	0.108861	0.0773151
chr16	71798829	71798928	6514377	0	-	0.454545	(0.44,0.476]	chr16	631208	90	INTRON	INTRON	AP1G1	ENSG00000166747.13	ENST00000299980.9:ENST00000569748.5:ENST00000393512.7:ENST00000565009.5:ENST00000568327.5:ENST00000450149.6:ENST00000563259.5:ENST00000563104.5:ENST00000569185.5:ENST00000566161.5:ENST00000567583.1:ENST00000565412.5:ENST00000569975.5:ENST00000570297.5:ENST00000570017.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	77	2	2.81462	2.83957	2.86452	0.00247064	0.00159222	0.0446195	0.0367961
chr3	149081735	149081835	1840952	0	-	0.35	(0.32,0.35]	chr3	185197	53	INTRON	INTRON	HLTF	ENSG00000071794.16	ENST00000310053.10:ENST00000465259.5:ENST00000392912.6:ENST00000494055.5	protein_coding	protein_coding	protein_coding	protein_coding	2	50	2	2.4458	2.839555	3.23331	0.0425977	0.00315414	0.148082	0.0515261
chr3	195688104	195688198	1593748	0	+	0.234043	[0,0.28]	chr3	165086	4	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	MUC20-OT1	ENSG00000242086.8	ENST00000429897.5:ENST00000600527.5:ENST00000626089.2:ENST00000451982.6:ENST00000414625.6:ENST00000628917.2:ENST00000625358.2:ENST00000602127.5:ENST00000625882.2:ENST00000627502.2:ENST00000597034.5:ENST00000629823.2:ENST00000630243.2:ENST00000627718.2:ENST00000631366.2:ENST00000630170.2:ENST00000626156.1:ENST00000626569.2:ENST00000631189.2:ENST00000599448.5:ENST00000597482.5:ENST00000598992.5:ENST00000629990.1	lncRNA	lncRNA	lncRNA	lncRNA	3	83	2	2.3719	2.8394250000000003	3.30695	0.0139689	0.00469836	0.10247	0.0600108
chr2	69364959	69365058	1147082	0	-	0.323232	(0.32,0.35]	chr2	122511	9	INTRON	INTRON	GFPT1	ENSG00000198380.13	ENST00000361060.5:ENST00000357308.9:ENST00000674507.1:ENST00000674438.1:ENST00000494201.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	51	2	2.30673	2.839415	3.3721	0.0584434	0.00182912	0.167723	0.0396683
chr1	167658593	167658693	247244	0	+	0.48	(0.476,0.515]	chr1	29437	167	INTRON	INTRON	RCSD1	ENSG00000198771.11	ENST00000537350.5:ENST00000361496.3:ENST00000367854.8:ENST00000472038.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	57	2	2.68023	2.839375	2.99852	0.0077575	0.00353671	0.0757402	0.0546236
chr6	27456029	27456127	3072621	0	-	0.510204	(0.476,0.515]	chr6	285617	24	INTRON	INTRON	ZNF184	ENSG00000096654.16	ENST00000211936.10:ENST00000683788.1:ENST00000377419.1	protein_coding	protein_coding	protein_coding	protein_coding	3	57	2	2.68023	2.839375	2.99852	0.0077575	0.00353671	0.0757402	0.0546236
chr15	28598773	28598872	5988002	0	+	0.30303	(0.28,0.32]	chr15	569248	47	INTRON	INTRON	HERC2P9	ENSG00000206149.11	ENST00000689985.1:ENST00000688694.1:ENST00000529537.2:ENST00000529624.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	3	72	2	2.55521	2.839265	3.12332	0.00698537	0.0067419	0.0739405	0.0718189
chr6	156948789	156948889	3008878	0	+	0.3	(0.28,0.32]	chr6	281124	50	INTRON	INTRON	ARID1B	ENSG00000049618.24	ENST00000346085.10:ENST00000636930.2:ENST00000647938.1:ENST00000350026.10:ENST00000674298.1:ENST00000674190.1:ENST00000414678.7:ENST00000638000.1:ENST00000319584.11:ENST00000452544.2:ENST00000637887.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	55	2	2.67453	2.83924	3.00395	0.021289	0.0101329	0.123318	0.0850389
chr1	503255	503355	355593	0	-	0.5	(0.476,0.515]	chr1	41003	3	SS3_PROX	SS3_PROX:INTRON	ENSG00000237094	ENSG00000237094.12	ENST00000641303.1:ENST00000641063.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	10	179	2	2.81334	2.839225	2.86511	1.00925e-4	8.67675e-5	0.00906611	0.00783027
chr3	183745978	183746077	1580778	0	+	0.424242	(0.408,0.44]	chr3	163062	88	INTRON	INTRON	YEATS2	ENSG00000163872.16	ENST00000305135.10	protein_coding	protein_coding	protein_coding	protein_coding	5	93	2	2.42404	2.838935	3.2538299999999998	0.00413548	2.37059e-4	0.0566868	0.0136195
chr7	155305969	155306067	3451847	0	+	0.357143	(0.35,0.378]	chr7	322633	17	INTRON	INTRON	INSIG1	ENSG00000186480.13	ENST00000344756.8:ENST00000340368.9:ENST00000342407.5:ENST00000476756.1	protein_coding	protein_coding	protein_coding	protein_coding	22	417	2	2.58819	2.8388999999999998	3.08961	2.08556e-5	6.52441e-6	0.00353198	0.00193507
chr7	23452783	23452883	3503490	0	-	0.54	(0.515,0.57]	chr7	326910	216	INTRON	INTRON	IGF2BP3	ENSG00000136231.14	ENST00000258729.8:ENST00000421467.6:ENST00000468263.5:ENST00000491719.5:ENST00000476938.5:ENST00000468005.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	82	2	1.73168	2.83888	3.94608	0.0119342	1.08342e-4	0.0962115	0.00933805
chr11	9310584	9310683	4909396	0	-	0.353535	(0.35,0.378]	chr11	460162	105	INTRON	INTRON	TMEM41B	ENSG00000166471.11	ENST00000524543.5:ENST00000528080.6:ENST00000299596.8:ENST00000611268.4:ENST00000527813.5:ENST00000533723.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	107	2	2.23334	2.838845	3.44435	0.00179102	0.00138634	0.0380316	0.0341261
chr21	6492385	6492479	7425400	0	-	0.37234	(0.35,0.378]	chr21	757477	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	ENSG00000275895	ENSG00000275895.7	ENST00000610664.5:ENST00000623375.3:ENST00000639996.1:ENST00000620065.4:ENST00000624739.1:ENST00000619610.2:ENST00000636315.1:ENST00000637031.1:ENST00000636177.1:ENST00000636403.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	63	2	2.83709	2.8388299999999997	2.84057	0.01435	0.00189462	0.0966737	0.0402736
chr21	34092668	34092768	7401284	0	+	0.43	(0.408,0.44]	chr21	753967	186	INTRON	INTRON	MRPS6:SLC5A3	ENSG00000243927.6:ENSG00000198743.7	ENST00000488492.5:ENST00000477091.5:ENST00000399312.3:ENST00000381151.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	71	2	2.2644	2.8388150000000003	3.41323	0.00768371	0.00129989	0.0753803	0.0333764
chr12	21248	21347	5253854	0	-	0.434343	(0.408,0.44]	chr12	499871	24	INTRON	INTRON	WASH8P	ENSG00000226210.3	ENST00000400706.3	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	4	69	2	2.26617	2.838805	3.41144	0.00649402	0.00178336	0.0734343	0.0379201
chr2	131268259	131268358	866063	0	+	0.373737	(0.35,0.378]	chr2	97278	31	INTRON	INTRON	PLEKHB2	ENSG00000115762.17	ENST00000404460.5	protein_coding	protein_coding	protein_coding	protein_coding	6	115	2	2.55326	2.838805	3.12435	8.63206e-4	7.66038e-4	0.0266494	0.025385
chr5	79649390	79649490	2399110	0	+	0.31	(0.28,0.32]	chr5	231737	2	SS5_PROX	SS5_PROX:INTRON	TENT2	ENSG00000164329.14	ENST00000423041.6:ENST00000504233.5:ENST00000453514.6:ENST00000428308.6:ENST00000296783.7:ENST00000504982.1:ENST00000513735.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	118	2	2.76883	2.83865	2.90847	0.00414663	4.61348e-4	0.0568239	0.0194611
chr16	18787562	18787662	6456651	0	-	0.38	(0.378,0.408]	chr16	622518	1	SS5_PROX	SS5_PROX:INTRON	RPS15A	ENSG00000134419.15	ENST00000322989.8:ENST00000572008.5:ENST00000563390.5:ENST00000574723.5:ENST00000576008.5:ENST00000562935.5:ENST00000569365.6:ENST00000576436.5:ENST00000565420.5:ENST00000569083.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	156	2	2.39937	2.838605	3.27784	5.77734e-4	2.17147e-4	0.0223108	0.0129235
chr11	70408638	70408737	4821717	0	+	0.555556	(0.515,0.57]	chr11	449607	4	INTRON	INTRON	CTTN	ENSG00000085733.16	ENST00000346329.7:ENST00000301843.13:ENST00000527622.5:ENST00000376561.7:ENST00000415461.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	89	2	1.93911	2.8386	3.73809	0.00339987	3.11298e-4	0.0537228	0.0162055
chr3	100739785	100739885	1468248	0	+	0.29	(0.28,0.32]	chr3	153882	3	SS5_PROX	SS5_PROX:INTRON	TFG	ENSG00000114354.15	ENST00000675047.1:ENST00000490574.6:ENST00000675543.1:ENST00000676308.1:ENST00000675499.1:ENST00000674699.1:ENST00000418917.7:ENST00000675553.1:ENST00000620299.5:ENST00000675246.1:ENST00000675692.1:ENST00000676276.1:ENST00000676054.1:ENST00000675890.1:ENST00000675011.1:ENST00000675586.1:ENST00000674645.1:ENST00000675958.1:ENST00000674798.1:ENST00000676010.1:ENST00000675591.1:ENST00000675420.1:ENST00000674615.1:ENST00000676431.1:ENST00000674758.1:ENST00000240851.9:ENST00000675243.1:ENST00000676111.1:ENST00000476228.5:ENST00000463568.6:ENST00000676395.1:ENST00000487505.6:ENST00000615993.2:ENST00000676455.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	123	2	2.47203	2.83853	3.20503	0.0114089	9.8739e-5	0.0886611	0.00835981
chr5	138428186	138428286	2495635	0	+	0.52	(0.515,0.57]	chr5	238589	1	SS5_PROX	SS5_PROX:INTRON	KDM3B	ENSG00000120733.14	ENST00000314358.10:ENST00000510866.5:ENST00000542866.2:ENST00000507996.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	100	2	2.42476	2.8384400000000003	3.25212	6.76573e-4	2.5577e-4	0.0236287	0.0148225
chr14	103483346	103483443	5826644	0	+	0.360825	(0.35,0.378]	chr14	552919	9	INTRON	INTRON	MARK3	ENSG00000075413.19	ENST00000678179.1:ENST00000676838.1:ENST00000677348.1:ENST00000677404.1:ENST00000676694.1:ENST00000676938.1:ENST00000678619.1:ENST00000676897.1:ENST00000677214.1:ENST00000677942.1:ENST00000676830.1:ENST00000678999.1:ENST00000677228.1:ENST00000556744.2:ENST00000677104.1:ENST00000679330.1:ENST00000560417.6:ENST00000440884.7:ENST00000677035.1:ENST00000678022.1:ENST00000677560.1:ENST00000561314.6:ENST00000429436.7:ENST00000677118.1:ENST00000676564.1:ENST00000678169.1:ENST00000678175.1:ENST00000678897.1:ENST00000678278.1:ENST00000676645.1:ENST00000677829.1:ENST00000678302.1:ENST00000677133.1:ENST00000678207.1:ENST00000677360.1:ENST00000676905.1:ENST00000678343.1:ENST00000677347.1:ENST00000678071.1:ENST00000677432.1:ENST00000678237.1:ENST00000677604.1:ENST00000676518.1:ENST00000677051.1:ENST00000677857.1:ENST00000677869.1:ENST00000416682.6:ENST00000303622.13:ENST00000216288.11:ENST00000679105.1:ENST00000553942.5:ENST00000335102.9:ENST00000678091.1:ENST00000561071.5:ENST00000676745.1:ENST00000554627.5:ENST00000559274.1:ENST00000679299.1:ENST00000678661.1:ENST00000677352.1:ENST00000676944.1:ENST00000677023.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	34	2	1.58862	2.83839	4.08816	0.0615516	0.046021	0.193423	0.149888
chr15	92928229	92928329	6103976	0	+	0.37	(0.35,0.378]	chr15	581422	5	INTRON	INTRON	ENSG00000279765:CHD2	ENSG00000279765.3:ENSG00000173575.22	ENST00000630790.1:ENST00000626874.2:ENST00000394196.9:ENST00000635856.1:ENST00000420239.7:ENST00000628375.2:ENST00000625990.3:ENST00000626782.2:ENST00000629136.1:ENST00000637572.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	34	2	1.58862	2.83839	4.08816	0.0615516	0.046021	0.193423	0.149888
chr16	71908943	71909042	6386741	0	+	0.363636	(0.35,0.378]	chr16	614084	49	INTRON	INTRON	IST1	ENSG00000182149.21	ENST00000568581.5:ENST00000540296.5:ENST00000544564.5:ENST00000541571.6:ENST00000538104.5:ENST00000535424.5:ENST00000606369.5:ENST00000537613.5:ENST00000424485.6:ENST00000566536.5:ENST00000378799.11:ENST00000538565.5:ENST00000329908.12:ENST00000538850.5:ENST00000541918.5:ENST00000378798.9:ENST00000534994.5:ENST00000539186.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	34	2	1.58862	2.83839	4.08816	0.0615516	0.046021	0.193423	0.149888
chr10	68047055	68047155	4637663	0	-	0.28	[0,0.28]	chr10	426436	21	INTRON	INTRON	HERC4	ENSG00000148634.16	ENST00000373700.9:ENST00000412272.6:ENST00000395198.7:ENST00000473533.6:ENST00000427635.6:ENST00000513996.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	61	2	2.49527	2.838325	3.18138	0.0436497	0.00487606	0.14882	0.0640618
chr11	62593401	62593496	4959791	0	-	0.442105	(0.44,0.476]	chr11	466322	3	UTR3	UTR3:EXON_MRNA	MTA2	ENSG00000149480.7	ENST00000278823.7:ENST00000524902.5	protein_coding	protein_coding	protein_coding	protein_coding	41	705	2	2.79838	2.8383	2.87822	2.24488e-6	8.09204e-7	0.00104218	5.08792e-4
chr14	101777431	101777530	5818652	0	+	0.50505	(0.476,0.515]	chr14	551819	105	INTRON	INTRON	PPP2R5C	ENSG00000078304.20	ENST00000694906.1:ENST00000422945.6:ENST00000554442.5:ENST00000556068.5:ENST00000328724.9:ENST00000554504.1:ENST00000553890.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	79	2	2.34237	2.838265	3.33416	0.00230489	0.00223831	0.0435144	0.0428247
chr3	14971088	14971188	1372016	0	+	0.41	(0.408,0.44]	chr3	144608	82	INTRON	INTRON	NR2C2	ENSG00000177463.16	ENST00000425241.6:ENST00000413118.5:ENST00000435454.5:ENST00000323373.10:ENST00000475707.5:ENST00000393102.7:ENST00000437120.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	142	2	2.38209	2.8381499999999997	3.29421	0.0013549	3.47956e-5	0.0336321	0.00469546
chr6	20410629	20410729	2827535	0	+	0.53	(0.515,0.57]	chr6	265575	64	INTRON	INTRON	E2F3	ENSG00000112242.16	ENST00000346618.8:ENST00000535432.2	protein_coding	protein_coding	protein_coding	protein_coding	18	272	2	2.81471	2.838135	2.86156	1.05193e-5	5.96863e-6	0.00236629	0.00183779
chrX	149943550	149943650	7730316	0	+	0.36	(0.35,0.378]	chrX	791108	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	EOLA2-DT	ENSG00000235703.7	ENST00000670799.1:ENST00000654890.1:ENST00000425602.2:ENST00000449111.5:ENST00000690321.1:ENST00000444489.5:ENST00000669126.1	lncRNA	lncRNA	lncRNA	lncRNA	3	63	2	2.09331	2.838085	3.58286	0.0315717	6.77448e-4	0.13151	0.0236287
chr20	50929325	50929425	7355859	0	-	0.37	(0.35,0.378]	chr20	750113	1	INTRON	INTRON	ADNP	ENSG00000101126.18	ENST00000621696.5:ENST00000673732.1:ENST00000396029.8:ENST00000396032.8:ENST00000645081.1	protein_coding	protein_coding	protein_coding	protein_coding	6	116	2	2.0786	2.8379849999999998	3.59737	0.00903914	4.028e-5	0.0805265	0.00515102
chr4	98898522	98898620	2208213	0	-	0.489796	(0.476,0.515]	chr4	216170	26	INTRON	INTRON	EIF4E	ENSG00000151247.13	ENST00000450253.7:ENST00000280892.10:ENST00000515638.5:ENST00000504432.5:ENST00000511644.5:ENST00000505992.1:ENST00000507665.5:ENST00000504472.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	128	2	2.45188	2.837905	3.22393	3.94592e-4	3.84737e-4	0.0182343	0.0178567
chr20	5119269	5119366	7311577	0	-	0.525773	(0.515,0.57]	chr20	744491	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PCNA	ENSG00000132646.11	ENST00000379160.3:ENST00000379143.10	protein_coding	protein_coding	protein_coding	protein_coding	3	53	2	2.83188	2.837875	2.84387	0.0108207	0.0018149	0.0920575	0.0384415
chr3	28258924	28259023	1390718	0	+	0.373737	(0.35,0.378]	chr3	145636	48	INTRON	INTRON	CMC1	ENSG00000187118.14	ENST00000477739.1:ENST00000423894.5:ENST00000466830.6:ENST00000334841.10:ENST00000418849.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	63	2	2.4077	2.83782	3.26794	0.0122026	0.00257067	0.0910127	0.0466761
chr10	21718347	21718447	4406276	0	+	0.36	(0.35,0.378]	chr10	406555	40	INTRON	INTRON	MLLT10	ENSG00000078403.17	ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000651298.1:ENST00000377059.7:ENST00000651382.1:ENST00000438473.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	86	2	2.32464	2.83781	3.35098	0.0159285	1.59604e-4	0.101453	0.0108718
chr15	57116464	57116563	6034097	0	+	0.484848	(0.476,0.515]	chr15	574693	68	INTRON	INTRON	TCF12	ENSG00000140262.18	ENST00000438423.6:ENST00000267811.9:ENST00000333725.10:ENST00000560190.5:ENST00000559609.5:ENST00000557843.5:ENST00000557947.5:ENST00000561152.1:ENST00000561346.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	43	2	2.73205	2.8377749999999997	2.9435	0.0159328	0.00929849	0.109464	0.0817766
chr6	88905964	88906064	3158561	0	-	0.51	(0.476,0.515]	chr6	294234	2	SS5_PROX	SS5_PROX:INTRON	RNGTT	ENSG00000111880.16	ENST00000369485.9:ENST00000369475.7:ENST00000627296.1:ENST00000538899.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	43	2	2.73205	2.8377749999999997	2.9435	0.0159328	0.00929849	0.109464	0.0817766
chr7	1018718	1018818	3460642	0	-	0.51	(0.476,0.515]	chr7	323570	82	INTRON	INTRON	C7orf50	ENSG00000146540.15	ENST00000357429.10:ENST00000397100.6:ENST00000397098.8:ENST00000412051.5:ENST00000488073.1:ENST00000444428.5:ENST00000491163.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	43	2	2.73205	2.8377749999999997	2.9435	0.0159328	0.00929849	0.109464	0.0817766
chr7	123722720	123722820	3632398	0	-	0.51	(0.476,0.515]	chr7	337581	131	INTRON	INTRON	WASL	ENSG00000106299.8	ENST00000223023.5	protein_coding	protein_coding	protein_coding	protein_coding	2	43	2	2.73205	2.8377749999999997	2.9435	0.0159328	0.00929849	0.109464	0.0817766
chr10	28568320	28568420	4414157	0	+	0.27	[0,0.28]	chr10	407148	299	INTRON	INTRON	WAC	ENSG00000095787.24	ENST00000680735.1:ENST00000375664.8:ENST00000428935.6:ENST00000651598.1:ENST00000628285.3:ENST00000681112.1:ENST00000679570.1:ENST00000375646.5:ENST00000354911.9:ENST00000347934.8:ENST00000420266.6:ENST00000651885.1:ENST00000651441.1:ENST00000679398.1:ENST00000424454.5:ENST00000442148.6:ENST00000448193.5:ENST00000414108.6:ENST00000679428.1:ENST00000439676.5:ENST00000345541.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	99	2	2.42871	2.83765	3.24659	0.00570201	0.00461175	0.0656459	0.0626113
chr7	116893643	116893741	3385678	0	+	0.285714	(0.28,0.32]	chr7	317054	2	INTRON	INTRON	CAPZA2	ENSG00000198898.15	ENST00000464223.5:ENST00000484325.1:ENST00000414148.6:ENST00000361183.8:ENST00000449080.5:ENST00000426421.5:ENST00000490693.5:ENST00000417431.5:ENST00000464669.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	88	2	2.5905300000000002	2.837575	3.08462	0.0078976	0.0020216	0.076155	0.0416117
chr3	88060005	88060104	1457034	0	+	0.535354	(0.515,0.57]	chr3	153164	1	INTRON	INTRON	ZNF654	ENSG00000175105.8	ENST00000636215.2:ENST00000473136.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	37	2	2.68833	2.8375500000000002	2.98677	0.0184931	0.00632549	0.108861	0.0722266
chr16	84720805	84720904	6410111	0	+	0.535354	(0.515,0.57]	chr16	615272	39	INTRON	INTRON	USP10	ENSG00000103194.16	ENST00000562743.5:ENST00000540269.6:ENST00000563892.5:ENST00000562092.1:ENST00000569511.5:ENST00000219473.12:ENST00000570191.5:ENST00000563048.5:ENST00000562283.5:ENST00000563386.5:ENST00000569038.5:ENST00000570053.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	59	2	2.27116	2.83752	3.40388	0.00601759	0.00142538	0.0700813	0.0340865
chr19	6535638	6535733	7006635	0	+	0.410526	(0.408,0.44]	chr19	695211	7	UTR3	UTR3:EXON_MRNA	TNFSF9	ENSG00000125657.5	ENST00000245817.5	protein_coding	protein_coding	protein_coding	protein_coding	6	117	2	2.82511	2.8374550000000003	2.8498	0.00189528	2.49782e-4	0.0402736	0.0146029
chr16	2577700	2577800	6279272	0	+	0.41	(0.408,0.44]	chr16	600663	2	SS5_PROX	SS5_PROX:INTRON	PDPK1	ENSG00000140992.19	ENST00000566659.1:ENST00000441549.7:ENST00000268673.11:ENST00000342085.9:ENST00000389224.7:ENST00000491073.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	58	2	2.16746	2.8373850000000003	3.50731	0.024436	8.5918e-4	0.12011	0.0265787
chr3	69045289	69045387	1734649	0	-	0.510204	(0.476,0.515]	chr3	176796	3	INTRON	INTRON	TMF1	ENSG00000144747.17	ENST00000398559.7:ENST00000646304.1:ENST00000646708.1:ENST00000488010.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	110	2	2.72421	2.83735	2.95049	0.00107964	2.60757e-4	0.0302522	0.014326
chr1	31051219	31051319	412751	0	-	0.29	(0.28,0.32]	chr1	49733	220	INTRON	INTRON	PUM1	ENSG00000134644.16	ENST00000426105.7:ENST00000373747.7:ENST00000257075.9:ENST00000424085.6:ENST00000525843.5:ENST00000440538.6:ENST00000373741.8:ENST00000373742.6:ENST00000526215.5:ENST00000525948.5:ENST00000480602.1:ENST00000524516.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	73	2	2.82769	2.8372	2.84671	0.0169391	0.00216662	0.103888	0.0434015
chr19	36231694	36231793	7057592	0	+	0.343434	(0.32,0.35]	chr19	704670	25	INTRON	INTRON	ZNF146	ENSG00000167635.12	ENST00000456324.5:ENST00000591063.5:ENST00000443387.3:ENST00000586094.5:ENST00000587285.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	37	2	1.72898	2.837135	3.94529	0.0693433	0.0425433	0.184298	0.161951
chr1	51469068	51469164	453852	0	-	0.447917	(0.44,0.476]	chr1	54429	1	INTRON	INTRON	EPS15	ENSG00000085832.17	ENST00000371733.8:ENST00000371730.6:ENST00000371727.5:ENST00000471391.1:ENST00000465467.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	57	2	2.64669	2.8371	3.02751	0.00715968	0.0040295	0.0723634	0.0578376
chr5	65930303	65930403	2370881	0	+	0.53	(0.515,0.57]	chr5	228472	31	INTRON	INTRON	ERBIN	ENSG00000112851.15	ENST00000380943.6:ENST00000507490.1:ENST00000416865.6:ENST00000380935.5:ENST00000284037.10:ENST00000380938.6:ENST00000511297.5:ENST00000506030.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	131	2	2.27828	2.8370699999999998	3.39586	0.00105975	1.37472e-5	0.029799	0.00276767
chr8	125946284	125946384	3859328	0	+	0.44	(0.408,0.44]	chr8	355335	32	INTRON	INTRON	ENSG00000286122	ENSG00000286122.1	ENST00000651999.1:ENST00000652177.1	lncRNA	lncRNA	lncRNA	lncRNA	6	108	2	2.2616	2.83706	3.41252	0.00321416	1.61281e-4	0.0523065	0.0116286
chr7	106276631	106276728	3608527	0	-	0.474227	(0.44,0.476]	chr7	336538	17	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	NAMPT	ENSG00000105835.13	ENST00000681491.1:ENST00000222553.8:ENST00000681494.1:ENST00000680708.1:ENST00000681653.1:ENST00000681391.1:ENST00000680991.1:ENST00000680077.1:ENST00000681456.1:ENST00000680675.1:ENST00000681550.1:ENST00000680864.1:ENST00000680584.1:ENST00000680669.1:ENST00000424768.2:ENST00000681255.1:ENST00000679873.1:ENST00000679643.1:ENST00000681878.1:ENST00000489732.2:ENST00000679951.1:ENST00000680823.1:ENST00000680468.1:ENST00000681936.1:ENST00000680152.1:ENST00000681887.1:ENST00000680129.1:ENST00000680786.1:ENST00000681223.1:ENST00000679717.1:ENST00000484527.6:ENST00000354289.9:ENST00000491027.6:ENST00000393618.6:ENST00000489358.5:ENST00000441045.6:ENST00000417537.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	117	2	1.80383	2.83703	3.87023	0.00428258	2.32199e-4	0.0598892	0.0139633
chr4	73227708	73227808	2160516	0	-	0.29	(0.28,0.32]	chr4	212799	47	INTRON	INTRON	ANKRD17	ENSG00000132466.20	ENST00000358602.9:ENST00000558247.5:ENST00000330838.10:ENST00000561029.1	protein_coding	protein_coding	protein_coding	protein_coding	6	111	2	1.81786	2.836925	3.85599	0.0142986	4.63052e-4	0.104025	0.0198709
chr7	119738225	119738325	3628720	0	-	0.31	(0.28,0.32]	chr7	337319	329	INTRON	INTRON	LINC02476	ENSG00000225546.6	ENST00000660268.1:ENST00000431071.5	lncRNA	lncRNA	lncRNA	lncRNA	3	73	2	2.33771	2.8368349999999998	3.33596	0.0142701	0.00342993	0.103838	0.0517761
chr1	90967860	90967960	501984	0	-	0.42	(0.408,0.44]	chr1	59492	262	INTRON	INTRON	ZNF644	ENSG00000122482.22	ENST00000370440.5:ENST00000337393.10:ENST00000347275.9:ENST00000361321.5:ENST00000467231.5:ENST00000498303.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	43	2	2.58624	2.83681	3.08738	0.0273686	0.00478231	0.123904	0.0636201
chr17	81580935	81581034	6849028	0	-	0.59596	(0.57,1]	chr17	678158	85	INTRON	INTRON	NPLOC4	ENSG00000182446.14	ENST00000331134.11:ENST00000374747.9:ENST00000574897.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	58	2	2.81549	2.836755	2.85802	3.90081e-4	3.01883e-4	0.0177751	0.0160895
chr4	110156882	110156982	2227317	0	-	0.36	(0.35,0.378]	chr4	218024	509	INTRON	INTRON	ELOVL6	ENSG00000170522.10	ENST00000394607.7:ENST00000302274.8:ENST00000514184.5:ENST00000506625.5:ENST00000506461.1:ENST00000503885.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	62	2	2.63527	2.836705	3.03814	0.00767003	0.00443588	0.075364	0.061054
chr8	123074425	123074523	3850243	0	+	0.367347	(0.35,0.378]	chr8	354655	6	INTRON	INTRON	TBC1D31	ENSG00000156787.17	ENST00000520368.5:ENST00000519418.5:ENST00000287380.6:ENST00000522420.5:ENST00000327098.9:ENST00000518099.5:ENST00000521676.5:ENST00000524307.5:ENST00000522276.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	62	2	2.63527	2.836705	3.03814	0.00767003	0.00443588	0.075364	0.061054
chr1	1256802	1256891	359015	0	-	0.629214	(0.57,1]	chr1	41436	3	SS5_PROX	SS5_PROX:INTRON	UBE2J2	ENSG00000160087.21	ENST00000450390.6:ENST00000349431.11:ENST00000347370.6:ENST00000400929.6:ENST00000464036.5:ENST00000360466.6:ENST00000400930.8:ENST00000473215.5:ENST00000435198.5:ENST00000509720.5:ENST00000491779.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	21	184	2	2.719	2.8366949999999997	2.95439	1.77179e-6	9.48434e-7	8.01078e-4	6.04708e-4
chr19	11937471	11937571	7019877	0	+	0.45	(0.44,0.476]	chr19	697884	118	INTRON	INTRON	ZNF700	ENSG00000196757.8	ENST00000622593.4:ENST00000254321.10	protein_coding	protein_coding	protein_coding	protein_coding	2	30	2	1.83899	2.8366949999999997	3.8344	0.0589734	0.041276	0.167915	0.161534
chr3	61017053	61017153	1719789	0	-	0.46	(0.44,0.476]	chr3	176157	1947	INTRON	INTRON	FHIT	ENSG00000189283.10	ENST00000492590.6:ENST00000476844.5:ENST00000468189.5:ENST00000488467.5:ENST00000490952.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	30	2	1.83899	2.8366949999999997	3.8344	0.0589734	0.041276	0.167915	0.161534
chr1	151617955	151618055	225779	0	+	0.43	(0.408,0.44]	chr1	25862	31	INTRON	INTRON	SNX27	ENSG00000143376.14	ENST00000642376.1:ENST00000368843.8:ENST00000458013.7:ENST00000368841.7:ENST00000642479.1:ENST00000642349.1:ENST00000643179.1:ENST00000643814.1:ENST00000642582.1:ENST00000644970.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	44	2	2.36073	2.83665	3.31257	0.0481658	0.00198621	0.153019	0.0411469
chr3	12643383	12643482	1617224	0	-	0.373737	(0.35,0.378]	chr3	166990	138	INTRON	INTRON	RAF1	ENSG00000132155.14	ENST00000688543.1:ENST00000685348.1:ENST00000251849.9:ENST00000442415.7:ENST00000688444.1:ENST00000692093.1:ENST00000691724.1:ENST00000423275.6:ENST00000687326.1:ENST00000688803.1:ENST00000689876.1:ENST00000686455.1:ENST00000684903.1:ENST00000693312.1:ENST00000690460.1:ENST00000692773.1:ENST00000688625.1:ENST00000693664.1:ENST00000686762.1:ENST00000692311.1:ENST00000692558.1:ENST00000691779.1:ENST00000685738.1:ENST00000690397.1:ENST00000687923.1:ENST00000688269.1:ENST00000693705.1:ENST00000689097.1:ENST00000691899.1:ENST00000689914.1:ENST00000690625.1:ENST00000689389.1:ENST00000687257.1:ENST00000686409.1:ENST00000685653.1:ENST00000689540.1:ENST00000691396.1:ENST00000685437.1:ENST00000689418.1:ENST00000687940.1:ENST00000689481.1:ENST00000491290.2:ENST00000686479.1:ENST00000689033.1:ENST00000692777.1:ENST00000689226.1:ENST00000691718.1:ENST00000692959.1:ENST00000685740.1:ENST00000688753.1:ENST00000688779.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	62	2	2.54421	2.83663	3.12905	0.00630238	0.00566312	0.0722266	0.0653997
chr10	70424136	70424236	4447277	0	+	0.44	(0.408,0.44]	chr10	410355	25	UTR3	UTR3:EXON_MRNA	EIF4EBP2	ENSG00000148730.7	ENST00000373218.5	protein_coding	protein_coding	protein_coding	protein_coding	2	43	2	2.78122	2.836575	2.89193	0.015812	0.00950364	0.101453	0.0863579
chr19	16656366	16656465	7150753	0	-	0.434343	(0.408,0.44]	chr19	722466	6	INTRON	INTRON	SMIM7	ENSG00000214046.9	ENST00000465250.6:ENST00000481671.6:ENST00000594662.5:ENST00000597781.5:ENST00000598278.5:ENST00000593409.5:ENST00000487803.5:ENST00000627144.2:ENST00000487416.7:ENST00000593404.5:ENST00000597711.5:ENST00000599310.5:ENST00000397349.6:ENST00000602194.5:ENST00000600740.5:ENST00000461488.5:ENST00000463051.5:ENST00000358726.6:ENST00000594507.5:ENST00000461364.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	43	2	2.78122	2.836575	2.89193	0.015812	0.00950364	0.101453	0.0863579
chr2	196146455	196146555	1301713	0	-	0.41	(0.408,0.44]	chr2	136261	4	SS3_PROX	SS3_PROX:INTRON	STK17B	ENSG00000081320.11	ENST00000263955.9:ENST00000409228.5	protein_coding	protein_coding	protein_coding	protein_coding	2	43	2	2.78122	2.836575	2.89193	0.015812	0.00950364	0.101453	0.0863579
chr4	1703195	1703295	2095133	0	-	0.44	(0.408,0.44]	chr4	207215	2	SS5_PROX	SS5_PROX:INTRON	SLBP	ENSG00000163950.13	ENST00000489418.6:ENST00000429429.6:ENST00000318386.8:ENST00000483348.5:ENST00000488267.5:ENST00000480936.1	protein_coding	protein_coding	protein_coding	protein_coding	2	43	2	2.78122	2.836575	2.89193	0.015812	0.00950364	0.101453	0.0863579
chr20	47250436	47250536	7348437	0	-	0.49	(0.476,0.515]	chr20	749282	6	INTRON	INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000467200.6:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000468376.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	59	2	2.66112	2.836545	3.01197	0.00633162	0.0044598	0.0722266	0.0592169
chr1	114717008	114717105	528188	0	-	0.525773	(0.515,0.57]	chr1	62233	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	CSDE1	ENSG00000009307.17	ENST00000339438.10:ENST00000610726.5:ENST00000692719.1:ENST00000358528.9:ENST00000688211.1:ENST00000438362.7:ENST00000689217.1:ENST00000689989.1:ENST00000686025.1:ENST00000686781.1:ENST00000686123.1:ENST00000684913.1:ENST00000686235.1:ENST00000693467.1:ENST00000689732.1:ENST00000693644.1:ENST00000687759.1:ENST00000692044.1:ENST00000689885.1:ENST00000691403.1:ENST00000692629.1:ENST00000690013.1:ENST00000690420.1:ENST00000692950.1:ENST00000686667.1:ENST00000691032.1:ENST00000685676.1:ENST00000529046.6:ENST00000692672.1:ENST00000691377.1:ENST00000689631.1:ENST00000688611.1:ENST00000690207.1:ENST00000693311.1:ENST00000689510.1:ENST00000686581.1:ENST00000689727.1:ENST00000690784.1:ENST00000483030.2:ENST00000687548.1:ENST00000689573.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	75	2	1.86218	2.83649	3.8108	0.0100169	2.17298e-4	0.0880217	0.0135077
chr9	128342626	128342726	4204183	0	+	0.38	(0.378,0.408]	chr9	384250	1	SS3_PROX	SS3_PROX:INTRON	SLC27A4	ENSG00000167114.13	ENST00000300456.5:ENST00000372870.5	protein_coding	protein_coding	protein_coding	protein_coding	4	72	2	2.57022	2.83648	3.10274	0.00586642	0.00179058	0.0668095	0.0392749
chr15	44339810	44339909	6013582	0	+	0.434343	(0.408,0.44]	chr15	572866	11	INTRON	INTRON	GOLM2	ENSG00000166734.20	ENST00000299957.11:ENST00000557945.5:ENST00000650436.1:ENST00000345795.6:ENST00000559037.1:ENST00000558847.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	69	2	2.22268	2.836435	3.45019	0.00770925	0.00152664	0.0784002	0.0353936
chr5	172927398	172927498	2547784	0	+	0.41	(0.408,0.44]	chr5	243242	4	INTRON	INTRON	ERGIC1	ENSG00000113719.17	ENST00000393784.8:ENST00000690799.1:ENST00000686615.1:ENST00000684928.1:ENST00000691612.1:ENST00000687901.1:ENST00000689975.1:ENST00000693299.1:ENST00000687702.1:ENST00000685391.1:ENST00000686955.1:ENST00000692557.1:ENST00000686449.1:ENST00000693572.1:ENST00000519796.5:ENST00000523650.5:ENST00000521392.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	69	2	2.22268	2.836435	3.45019	0.00770925	0.00152664	0.0784002	0.0353936
chrX	23784586	23784669	7630709	0	+	0.481928	(0.476,0.515]	chrX	781421	2	SS5_PROX	SS5_PROX:INTRON	SAT1	ENSG00000130066.17	ENST00000379270.5:ENST00000379254.5:ENST00000489394.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	87	2	2.10246	2.83643	3.5704	0.00381269	8.75056e-4	0.0562562	0.0270926
chr19	39484941	39485038	7068273	0	+	0.463918	(0.44,0.476]	chr19	705953	4	SS3_PROX	SS3_PROX:INTRON	TIMM50	ENSG00000105197.11	ENST00000544017.5:ENST00000601358.5:ENST00000607714.6:ENST00000599794.5:ENST00000597666.5:ENST00000601403.5:ENST00000602028.5:ENST00000597782.5:ENST00000602265.5:ENST00000599733.5:ENST00000594583.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	93	2	2.50105	2.836385	3.17172	0.00240161	5.10693e-4	0.0452061	0.020816
chr9	120570994	120571090	4333804	0	-	0.46875	(0.44,0.476]	chr9	398165	2	INTRON	INTRON	CDK5RAP2	ENSG00000136861.19	ENST00000349780.9:ENST00000360190.8:ENST00000687279.1:ENST00000687633.1:ENST00000690814.1:ENST00000693714.1:ENST00000693386.1:ENST00000686376.1:ENST00000692155.1:ENST00000690646.1:ENST00000693433.1:ENST00000473282.6:ENST00000480112.5:ENST00000685866.1:ENST00000689688.1:ENST00000416449.6:ENST00000691504.1:ENST00000360822.8:ENST00000693728.1:ENST00000690474.1:ENST00000693137.1:ENST00000481266.2:ENST00000472883.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	87	2	1.892	2.83623	3.78046	0.00935701	3.54249e-4	0.0858596	0.0174886
chr10	43404823	43404922	4605463	0	-	0.323232	(0.32,0.35]	chr10	424262	76	INTRON	INTRON	HNRNPF	ENSG00000169813.17	ENST00000356053.7:ENST00000357065.8:ENST00000682386.1:ENST00000337970.7	protein_coding	protein_coding	protein_coding	protein_coding	10	211	2	2.78692	2.8359949999999996	2.88507	2.63918e-4	7.61652e-5	0.0149605	0.00732363
chr1	10061744	10061844	19414	0	+	0.41	(0.408,0.44]	chr1	1838	277	INTRON	INTRON	UBE4B	ENSG00000130939.20	ENST00000672724.1:ENST00000253251.12:ENST00000343090.11:ENST00000377153.5	protein_coding	protein_coding	protein_coding	protein_coding	2	44	2	2.66579	2.83587	3.00595	0.019342	0.00781452	0.119831	0.0759016
chr14	58292665	58292765	5904690	0	-	0.41	(0.408,0.44]	chr14	560844	2	SS5_PROX	SS5_PROX:INTRON	PSMA3-AS1	ENSG00000257621.9	ENST00000554360.5:ENST00000556002.5:ENST00000555275.5:ENST00000554378.5:ENST00000555707.5:ENST00000556400.5:ENST00000557660.5:ENST00000553657.5:ENST00000555037.1:ENST00000551597.6	lncRNA	lncRNA	lncRNA	lncRNA	2	44	2	2.66579	2.83587	3.00595	0.019342	0.00781452	0.119831	0.0759016
chr12	122225314	122225408	5439710	0	-	0.457447	(0.44,0.476]	chr12	520192	7	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	DIABLO	ENSG00000184047.20	ENST00000443649.9:ENST00000650715.1:ENST00000464942.7:ENST00000353548.11:ENST00000644227.1:ENST00000644509.1:ENST00000342392.3:ENST00000645569.1:ENST00000267169.11:ENST00000540535.6:ENST00000541273.6:ENST00000541656.6:ENST00000446652.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	127	2	2.63086	2.835795	3.04073	7.34071e-4	1.55969e-4	0.0249268	0.0106835
chr19	11105791	11105882	7016981	0	+	0.450549	(0.44,0.476]	chr19	697438	2	SS5_PROX	SS5_PROX:INTRON	LDLR	ENSG00000130164.14	ENST00000557933.5:ENST00000558518.6:ENST00000545707.5:ENST00000535915.5:ENST00000455727.6:ENST00000558013.5:ENST00000252444.9:ENST00000560467.1	protein_coding	protein_coding	protein_coding	protein_coding	7	127	2	2.63086	2.835795	3.04073	7.34071e-4	1.55969e-4	0.0249268	0.0106835
chr1	93089892	93089991	162645	0	+	0.50505	(0.476,0.515]	chr1	17567	85	INTRON	INTRON	MTF2	ENSG00000143033.18	ENST00000540243.5:ENST00000545708.5:ENST00000474314.6:ENST00000370298.9:ENST00000473430.5:ENST00000494963.5:ENST00000471953.5:ENST00000370303.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	44	2	2.56868	2.83566	3.10264	0.0256676	0.00543163	0.133676	0.0645052
chr11	652781	652878	4889048	0	-	0.505155	(0.476,0.515]	chr11	457695	10	INTRON	INTRON	DEAF1	ENSG00000177030.19	ENST00000382409.4:ENST00000527170.5:ENST00000685854.1:ENST00000683307.1:ENST00000528864.6:ENST00000525626.6:ENST00000682936.1:ENST00000690068.1:ENST00000692634.1:ENST00000687329.1:ENST00000686001.1:ENST00000689835.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	44	2	2.56868	2.83566	3.10264	0.0256676	0.00543163	0.133676	0.0645052
chr16	16605379	16605479	6311916	0	+	0.48	(0.476,0.515]	chr16	604098	1054	INTRON	INTRON	ENSG00000260126	ENSG00000260126.2	ENST00000567465.2	lncRNA	lncRNA	lncRNA	lncRNA	2	44	2	2.56868	2.83566	3.10264	0.0256676	0.00543163	0.133676	0.0645052
chr11	5495568	5495668	4898178	0	-	0.29	(0.28,0.32]	chr11	459195	263	INTRON	INTRON	HBG2:ENSG00000239920:HBE1:OR51B5	ENSG00000196565.15:ENSG00000239920.2:ENSG00000213931.7:ENSG00000167355.8	ENST00000380252.6:ENST00000380259.7:ENST00000292896.3:ENST00000380237.5:ENST00000420726.6:ENST00000420465.6:ENST00000415970.6:ENST00000418729.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:nonsense_mediated_decay:processed_transcript	11	244	2	2.38189	2.83552	3.28915	0.00104577	1.99784e-5	0.0294539	0.00345688
chr14	101778329	101778429	5818661	0	+	0.3	(0.28,0.32]	chr14	551819	114	INTRON	INTRON	PPP2R5C	ENSG00000078304.20	ENST00000694906.1:ENST00000422945.6:ENST00000554442.5:ENST00000556068.5:ENST00000328724.9:ENST00000554504.1:ENST00000553890.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	73	2	2.05458	2.83529	3.616	0.0381508	7.42427e-4	0.141764	0.024913
chr1	229536477	229536576	653544	0	-	0.343434	(0.32,0.35]	chr1	77458	14	INTRON	INTRON	ABCB10	ENSG00000135776.5	ENST00000344517.5	protein_coding	protein_coding	protein_coding	protein_coding	9	161	2	2.27995	2.83514	3.39033	8.14752e-4	2.63309e-4	0.0260477	0.0149561
chr22	16813254	16813353	7546535	0	-	0.353535	(0.35,0.378]	chr22	771329	48	INTRON	INTRON	XKR3	ENSG00000172967.8	ENST00000331428.5:ENST00000684488.1	protein_coding	protein_coding	protein_coding	protein_coding	9	176	2	2.46438	2.83511	3.20584	0.00107609	2.11423e-5	0.0301994	0.00355554
chr10	96569097	96569196	4674251	0	-	0.494949	(0.476,0.515]	chr10	430721	33	INTRON	INTRON	TM9SF3	ENSG00000077147.16	ENST00000371142.9:ENST00000649367.1:ENST00000443638.1:ENST00000464654.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	68	2	2.29359	2.834955	3.37632	0.00584957	0.00195267	0.0689807	0.0400465
chr8	125195990	125196090	3854533	0	+	0.48	(0.476,0.515]	chr8	355249	133	INTRON	INTRON	NSMCE2	ENSG00000156831.8	ENST00000517532.5:ENST00000287437.8:ENST00000522563.5:ENST00000517315.1	protein_coding	protein_coding	protein_coding	protein_coding	4	68	2	2.29359	2.834955	3.37632	0.00584957	0.00195267	0.0689807	0.0400465
chr3	39057576	39057675	1401194	0	+	0.292929	(0.28,0.32]	chr3	147030	46	INTRON	INTRON	WDR48	ENSG00000114742.14	ENST00000423296.6:ENST00000302313.10:ENST00000413099.6:ENST00000433841.6:ENST00000420940.6:ENST00000441361.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	72	2	2.4721	2.8349200000000003	3.19774	0.00906617	0.00548491	0.0854289	0.0648867
chr2	135872396	135872496	1233850	0	-	0.4	(0.378,0.408]	chr2	131340	3	SS5_PROX	SS5_PROX:INTRON	MCM6	ENSG00000076003.5	ENST00000264156.3	protein_coding	protein_coding	protein_coding	protein_coding	3	61	2	2.55607	2.834835	3.1136	0.00704647	0.00443339	0.0718189	0.061054
chr1	357135	357225	354170	0	-	0.388889	(0.378,0.408]	chr1	40918	6	EXON_LNCRNA	EXON_LNCRNA	ENSG00000228463	ENSG00000228463.10	ENST00000441866.2	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	6	113	2	2.54813	2.834815	3.1215	0.00119772	4.84777e-4	0.0315806	0.0199443
chr1	225923041	225923135	646268	0	-	0.414894	(0.408,0.44]	chr1	76564	8	EXON_MRNA	EXON_MRNA:INTRON	PYCR2	ENSG00000143811.20	ENST00000612039.4:ENST00000478402.5:ENST00000343818.11:ENST00000446534.1:ENST00000489681.5:ENST00000472798.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	142	2	2.5052	2.8347249999999997	3.16425	5.05909e-4	1.27972e-4	0.0202328	0.0102847
chr20	63285979	63286058	7299778	0	+	0.607595	(0.57,1]	chr20	742809	1	CDS	CDS:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ARFGAP1	ENSG00000101199.13	ENST00000519273.6:ENST00000519604.5:ENST00000547204.5:ENST00000549047.5:ENST00000370283.9:ENST00000523460.5:ENST00000520485.5:ENST00000370275.8:ENST00000518601.6:ENST00000353546.7:ENST00000518794.6:ENST00000468975.6:ENST00000518691.1:ENST00000518618.2:ENST00000395285.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	80	2	2.46024	2.834705	3.20917	2.02775e-4	7.97196e-5	0.0129814	0.00742971
chr10	72717199	72717299	4450343	0	+	0.37	(0.35,0.378]	chr10	410752	9	INTRON	INTRON	MCU	ENSG00000156026.15	ENST00000373053.8:ENST00000357157.10:ENST00000604679.5:ENST00000604372.5:ENST00000603649.5:ENST00000605597.5:ENST00000536019.5:ENST00000604152.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	62	2	2.67874	2.83459	2.99044	0.00894806	0.00373022	0.0799922	0.0561984
chr2	241282292	241282392	1348235	0	-	0.37	(0.35,0.378]	chr2	141648	93	INTRON	INTRON	HDLBP	ENSG00000115677.18	ENST00000310931.10:ENST00000391976.6:ENST00000428482.5:ENST00000430918.5:ENST00000441124.5:ENST00000413241.5:ENST00000423693.5:ENST00000425989.5:ENST00000420451.5:ENST00000417540.5:ENST00000462130.1:ENST00000496569.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	62	2	2.67874	2.83459	2.99044	0.00894806	0.00373022	0.0799922	0.0561984
chr1	19603552	19603651	40460	0	+	0.424242	(0.408,0.44]	chr1	4746	22	INTRON	INTRON	MICOS10	ENSG00000173436.15	ENST00000648702.1:ENST00000617872.4:ENST00000322753.7:ENST00000486890.5:ENST00000462646.5:ENST00000467029.5:ENST00000481464.5:ENST00000498642.5:ENST00000485362.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	37	2	1.43792	2.83444	4.23096	0.062843	0.0278028	0.196433	0.123904
chr17	82820520	82820620	6694899	0	+	0.43	(0.408,0.44]	chr17	654903	52	INTRON	INTRON	TBCD	ENSG00000141556.22	ENST00000682479.1:ENST00000682722.1:ENST00000684464.1:ENST00000684544.1:ENST00000681983.1:ENST00000684361.1:ENST00000683184.1:ENST00000683282.1:ENST00000684408.1:ENST00000355528.9:ENST00000683444.1:ENST00000684776.1:ENST00000683041.1:ENST00000684760.1:ENST00000684349.1:ENST00000682213.1:ENST00000683009.1:ENST00000682921.1:ENST00000539345.6:ENST00000684000.1:ENST00000684188.1:ENST00000684429.1:ENST00000682610.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	37	2	1.43792	2.83444	4.23096	0.062843	0.0278028	0.196433	0.123904
chrX	77918212	77918311	7685106	0	+	0.424242	(0.408,0.44]	chrX	786831	70	INTRON	INTRON	ENSG00000248503:ATP7A:PGK1	ENSG00000248503.3:ENSG00000165240.22:ENSG00000102144.15	ENST00000686088.1:ENST00000693051.1:ENST00000341514.11:ENST00000688746.1:ENST00000688338.1:ENST00000685264.1:ENST00000686515.1:ENST00000687086.1:ENST00000689530.1:ENST00000686999.1:ENST00000642523.1:ENST00000644362.1:ENST00000343533.10:ENST00000686543.1:ENST00000686033.1:ENST00000692908.1:ENST00000686688.1:ENST00000686480.1:ENST00000689649.1:ENST00000686416.1:ENST00000682742.2:ENST00000685434.1:ENST00000693387.1:ENST00000688249.1:ENST00000689891.1:ENST00000691152.1:ENST00000688889.1:ENST00000687984.1:ENST00000685208.1:ENST00000687599.1:ENST00000685885.1:ENST00000687082.1:ENST00000693167.1:ENST00000692729.1:ENST00000645454.1:ENST00000686896.1:ENST00000689731.1:ENST00000684798.1:ENST00000686560.1:ENST00000686464.1:ENST00000686050.1:ENST00000602791.2:ENST00000686133.1:ENST00000645094.1:ENST00000689541.1:ENST00000642651.1:ENST00000693398.1:ENST00000688165.1:ENST00000692110.1:ENST00000687325.1:ENST00000689767.1:ENST00000687628.1:ENST00000691456.1	protein_coding	protein_coding	protein_coding:transcribed_processed_pseudogene	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	37	2	1.43792	2.83444	4.23096	0.062843	0.0278028	0.196433	0.123904
chr15	93017264	93017362	6104925	0	+	0.428571	(0.408,0.44]	chr15	581645	20	INTRON	INTRON	CHD2	ENSG00000173575.22	ENST00000626874.2:ENST00000394196.9:ENST00000625662.2:ENST00000627460.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	77	2	2.64944	2.8344300000000002	3.01942	0.00481947	7.74413e-4	0.060277	0.0256083
chr6	68741506	68741606	2887381	0	+	0.5	(0.476,0.515]	chr6	273730	1017	INTRON	INTRON	ADGRB3	ENSG00000135298.15	ENST00000370598.6:ENST00000684661.1:ENST00000546190.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	61	2	1.99341	2.834425	3.67544	0.037389	5.51624e-4	0.155878	0.0216014
chr6	140399992	140400092	2970456	0	+	0.48	(0.476,0.515]	chr6	279019	845	INTRON	INTRON	ENSG00000288714	ENSG00000288714.1	ENST00000684511.1	lncRNA	lncRNA	lncRNA	lncRNA	3	61	2	1.99341	2.834425	3.67544	0.037389	5.51624e-4	0.155878	0.0216014
chr22	46678715	46678813	7535167	0	+	0.591837	(0.57,1]	chr22	770527	16	UTR3	UTR3:EXON_MRNA	GRAMD4	ENSG00000075240.17	ENST00000406902.6:ENST00000361034.7:ENST00000408031.1	protein_coding	protein_coding	protein_coding	protein_coding	11	98	2	2.33683	2.8342799999999997	3.33173	3.05387e-4	2.89691e-6	0.0155972	0.00119813
chr16	58544203	58544303	6495486	0	-	0.31	(0.28,0.32]	chr16	628479	3	SS3_PROX	SS3_PROX:INTRON	CNOT1	ENSG00000125107.19	ENST00000317147.10:ENST00000569240.5:ENST00000567188.5:ENST00000441024.6:ENST00000567133.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	149	2	2.44355	2.83427	3.22499	9.82119e-4	6.82828e-4	0.0288015	0.0239239
chr3	196063715	196063808	1897358	0	-	0.494624	(0.476,0.515]	chr3	189929	4	INTRON	INTRON	TFRC	ENSG00000072274.13	ENST00000420415.5:ENST00000360110.9:ENST00000392396.7:ENST00000464368.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	23	394	2	2.72526	2.83418	2.9431	3.74104e-5	9.37631e-7	0.00522012	5.51418e-4
chr14	23640289	23640388	5657536	0	+	0.545455	(0.515,0.57]	chr14	539539	5	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	DHRS2	ENSG00000100867.15	ENST00000432832.6:ENST00000553896.5:ENST00000250383.11:ENST00000556701.5:ENST00000344777.11:ENST00000556729.1:ENST00000611765.4:ENST00000557535.5:ENST00000553600.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	54	2	2.74772	2.834085	2.92045	0.0142192	0.00128922	0.103638	0.0328334
chr12	69265838	69265937	5163779	0	+	0.484848	(0.476,0.515]	chr12	489050	29	INTRON	INTRON	CPSF6	ENSG00000111605.18	ENST00000435070.7:ENST00000650046.1:ENST00000456847.7:ENST00000266679.8:ENST00000551516.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	57	2	2.37731	2.834025	3.29074	0.0111793	0.00272563	0.0937192	0.0467523
chr1	207763656	207763755	305019	0	+	0.272727	[0,0.28]	chr1	35105	5	INTRON	INTRON	CD46	ENSG00000117335.21	ENST00000695779.1:ENST00000695777.1:ENST00000695778.1:ENST00000496723.2:ENST00000695782.1:ENST00000695781.1:ENST00000695780.1:ENST00000636114.2:ENST00000367042.6:ENST00000322875.8:ENST00000322918.9:ENST00000354848.5:ENST00000357714.5:ENST00000358170.6:ENST00000367041.5:ENST00000367047.5:ENST00000695783.1:ENST00000695784.1:ENST00000469535.5:ENST00000360212.6:ENST00000480003.5:ENST00000695785.1:ENST00000464082.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	62	2	2.69187	2.834015	2.97616	0.0221271	0.0128425	0.123903	0.0926667
chr14	61744489	61744589	5906103	0	-	0.27	[0,0.28]	chr14	561059	271	INTRON	INTRON	HIF1A-AS3	ENSG00000258667.2	ENST00000660325.1:ENST00000554254.1	lncRNA	lncRNA	lncRNA	lncRNA	2	62	2	2.69187	2.834015	2.97616	0.0221271	0.0128425	0.123903	0.0926667
chr7	13988513	13988579	3486435	0	-	0.5	(0.476,0.515]	chr7	326066	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ETV1	ENSG00000006468.14	ENST00000430479.6:ENST00000242066.9:ENST00000405192.6:ENST00000405358.8:ENST00000405218.6:ENST00000443137.5:ENST00000403685.5:ENST00000421381.5:ENST00000431887.5:ENST00000460438.5:ENST00000483075.1:ENST00000433547.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	57	2	2.26789	2.8339600000000003	3.40003	0.0176567	0.00139193	0.105233	0.0341261
chr16	87731842	87731942	6538328	0	-	0.42	(0.408,0.44]	chr16	633530	8	INTRON	INTRON	KLHDC4	ENSG00000104731.14	ENST00000567298.5:ENST00000270583.10:ENST00000347925.9:ENST00000353170.9:ENST00000316853.10:ENST00000566349.5:ENST00000562155.5:ENST00000622456.4:ENST00000562261.1:ENST00000566661.5:ENST00000567513.1:ENST00000564484.5:ENST00000565328.5:ENST00000569747.5:ENST00000564396.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	80	2	2.60048	2.83373	3.06698	0.00484324	8.51999e-4	0.0640618	0.0267428
chr19	32703116	32703215	7049788	0	+	0.515152	(0.476,0.515]	chr19	702960	101	INTRON	INTRON	NUDT19	ENSG00000213965.4	ENST00000397061.4	protein_coding	protein_coding	protein_coding	protein_coding	6	111	2	2.75286	2.833705	2.91455	7.3224e-4	4.32026e-4	0.0246502	0.0190829
chr10	119590403	119590501	4705967	0	-	0.520408	(0.515,0.57]	chr10	434236	18	INTRON	INTRON	TIAL1	ENSG00000151923.18	ENST00000369093.6:ENST00000436547.7:ENST00000489822.5:ENST00000497671.5:ENST00000470781.5:ENST00000462373.1:ENST00000479729.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	37	2	2.60899	2.83369	3.05839	0.0232669	0.00485936	0.118148	0.0640618
chr3	138193227	138193327	1514011	0	+	0.52	(0.515,0.57]	chr3	158295	43	INTRON	INTRON	ARMC8	ENSG00000114098.18	ENST00000538260.5:ENST00000481646.5:ENST00000469044.6:ENST00000491704.5:ENST00000461600.5:ENST00000466749.5:ENST00000358441.6:ENST00000489213.5:ENST00000461822.5:ENST00000485396.5:ENST00000471453.5:ENST00000470821.5:ENST00000471709.5:ENST00000463485.5:ENST00000468560.1	protein_coding	protein_coding	protein_coding	protein_coding	2	37	2	2.60899	2.83369	3.05839	0.0232669	0.00485936	0.118148	0.0640618
chr1	30988508	30988607	412117	0	-	0.363636	(0.35,0.378]	chr1	49701	65	INTRON	INTRON	PUM1	ENSG00000134644.16	ENST00000426105.7:ENST00000373747.7:ENST00000257075.9:ENST00000424085.6:ENST00000525843.5:ENST00000440538.6:ENST00000498419.5:ENST00000373741.8:ENST00000373742.6:ENST00000532678.1:ENST00000526215.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	47	2	2.39939	2.833665	3.26794	0.0458078	0.00257067	0.149888	0.0466761
chr6	158786907	158787007	3253009	0	-	0.36	(0.35,0.378]	chr6	302363	4	SS5_PROX	SS5_PROX:INTRON	EZR	ENSG00000092820.19	ENST00000337147.11:ENST00000367075.4:ENST00000476189.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	47	2	2.39939	2.833665	3.26794	0.0458078	0.00257067	0.149888	0.0466761
chr7	6042832	6042932	3476076	0	-	0.43	(0.408,0.44]	chr7	325200	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	EIF2AK1	ENSG00000086232.13	ENST00000199389.11:ENST00000495565.5:ENST00000474029.5:ENST00000470168.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	70	2	1.83501	2.83359	3.83217	0.0323448	1.79883e-4	0.133003	0.0116696
chr16	68299325	68299425	6372233	0	+	0.49	(0.476,0.515]	chr16	612394	21	UTR3	UTR3:EXON_MRNA	SLC7A6	ENSG00000103064.15	ENST00000618043.4:ENST00000648130.1:ENST00000219343.11:ENST00000379152.7:ENST00000566454.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	76	2	2.69886	2.83355	2.96824	0.00385209	9.98194e-4	0.0542786	0.0290732
chr3	25747911	25748011	1642481	0	-	0.41	(0.408,0.44]	chr3	168658	71	INTRON	INTRON	NGLY1	ENSG00000151092.18	ENST00000280700.10:ENST00000428257.5:ENST00000675217.1:ENST00000676225.1:ENST00000493324.5:ENST00000396649.7:ENST00000675178.1:ENST00000675680.1:ENST00000308710.9:ENST00000280699.13:ENST00000674841.1:ENST00000675234.1:ENST00000463611.2:ENST00000417874.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	77	2	2.6117	2.8335150000000002	3.05533	0.00555224	6.50769e-4	0.0648867	0.0231135
chr7	111364775	111364875	3622130	0	-	0.54	(0.515,0.57]	chr7	337093	4009	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	75	2	1.82113	2.8334799999999998	3.84583	0.0118311	1.82082e-4	0.0962115	0.0122264
chr12	50114400	50114500	5135725	0	+	0.55	(0.515,0.57]	chr12	484313	11	INTRON	INTRON	COX14:ENSG00000272368	ENSG00000178449.9:ENSG00000272368.2	ENST00000317943.6:ENST00000548468.2:ENST00000550654.1:ENST00000550487.6:ENST00000548985.1:ENST00000552815.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	2	37	2	2.83188	2.833445	2.83501	0.0117686	0.0108207	0.0920575	0.0894475
chr2	183130894	183130994	938548	0	+	0.33	(0.32,0.35]	chr2	102984	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NUP35	ENSG00000163002.13	ENST00000409798.5:ENST00000446612.5:ENST00000497330.5:ENST00000374930.7:ENST00000479162.5:ENST00000295119.9:ENST00000452137.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	67	2	2.38582	2.833445	3.28107	0.0138529	0.00262488	0.0953077	0.0470772
chr7	12351072	12351172	3484882	0	-	0.34	(0.32,0.35]	chr7	325855	1	SS5_PROX	SS5_PROX:INTRON	VWDE	ENSG00000146530.15	ENST00000275358.8:ENST00000452576.6:ENST00000521169.5:ENST00000649524.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	67	2	2.38582	2.833445	3.28107	0.0138529	0.00262488	0.0953077	0.0470772
chrX	71287164	71287259	7678034	0	+	0.526316	(0.515,0.57]	chrX	786067	11	INTRON	INTRON	NONO	ENSG00000147140.17	ENST00000677446.1:ENST00000677274.1:ENST00000535149.5:ENST00000420903.6:ENST00000678335.1:ENST00000678830.1:ENST00000677826.1:ENST00000473525.2:ENST00000678437.1:ENST00000676499.1:ENST00000676495.1:ENST00000678323.1:ENST00000677766.1:ENST00000679267.1:ENST00000373856.8:ENST00000679254.1:ENST00000677879.1:ENST00000677245.1:ENST00000373841.5:ENST00000276079.13:ENST00000679029.1:ENST00000677218.1:ENST00000676797.1:ENST00000679062.1:ENST00000678660.1:ENST00000677014.1:ENST00000678231.1:ENST00000474431.5:ENST00000677612.1:ENST00000677977.1:ENST00000471419.7:ENST00000472185.1:ENST00000413858.5:ENST00000486613.6:ENST00000450092.6:ENST00000454976.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	37	2	2.83188	2.833445	2.83501	0.0117686	0.0108207	0.0920575	0.0894475
chr8	47951021	47951121	3945668	0	-	0.47	(0.44,0.476]	chr8	361951	66	INTRON	INTRON	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7	protein_coding	protein_coding	protein_coding	protein_coding	2	45	2	2.49112	2.8334200000000003	3.17572	0.0315968	0.00427037	0.144381	0.0573912
chr1	70215736	70215835	142530	0	+	0.474747	(0.44,0.476]	chr1	15965	96	INTRON	INTRON	SRSF11	ENSG00000116754.14	ENST00000370951.5:ENST00000463877.1:ENST00000687381.1:ENST00000370950.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	78	2	2.15726	2.8334	3.50954	0.00508124	0.00116647	0.0646039	0.0312127
chr19	29954991	29955090	7047681	0	+	0.494949	(0.476,0.515]	chr19	702657	120	INTRON	INTRON	URI1	ENSG00000105176.18	ENST00000360605.8:ENST00000570564.5:ENST00000574233.5:ENST00000392271.6:ENST00000574110.5:ENST00000574666.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	105	2	2.69681	2.833305	2.9698	0.00124841	3.73388e-4	0.0323336	0.0174227
chr1	35970832	35970930	71543	0	+	0.489796	(0.476,0.515]	chr1	9144	34	INTRON	INTRON	AGO3	ENSG00000126070.20	ENST00000324350.9:ENST00000397828.3:ENST00000634486.1:ENST00000373191.9:ENST00000246314.10:ENST00000491443.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	70	2	1.7425	2.833295	3.92409	0.0417334	1.13525e-4	0.147007	0.009124
chr21	36321201	36321300	7403697	0	+	0.323232	(0.32,0.35]	chr21	754279	5	INTRON	INTRON	MORC3	ENSG00000159256.13	ENST00000492336.5:ENST00000400485.6:ENST00000487909.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	91	2	2.21292	2.833265	3.45361	0.00445585	0.00193809	0.0610799	0.0399255
chr6	158611984	158612084	3022127	0	+	0.44	(0.408,0.44]	chr6	281847	18	INTRON	INTRON	TMEM181	ENSG00000146433.10	ENST00000367090.4:ENST00000684151.1	protein_coding	protein_coding	protein_coding	protein_coding	8	128	2	2.21074	2.833255	3.45577	0.0014216	1.29081e-4	0.0346633	0.0103343
chr4	55524036	55524135	2149680	0	-	0.40404	(0.378,0.408]	chr4	211545	136	INTRON	INTRON	CLOCK	ENSG00000134852.15	ENST00000513440.6:ENST00000381322.5:ENST00000435527.6:ENST00000506923.5:ENST00000509151.5:ENST00000513033.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	45	2	2.71183	2.8332100000000002	2.95459	0.0170789	0.00957623	0.110899	0.0820838
chrX	53672072	53672172	7821763	0	-	0.38	(0.378,0.408]	chrX	798234	176	INTRON	INTRON	HUWE1	ENSG00000086758.16	ENST00000262854.11:ENST00000342160.7:ENST00000218328.12:ENST00000446750.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	45	2	2.71183	2.8332100000000002	2.95459	0.0170789	0.00957623	0.110899	0.0820838
chr6	89818805	89818905	3162030	0	-	0.34	(0.32,0.35]	chr6	294886	149	INTRON	INTRON	MDN1	ENSG00000112159.12	ENST00000369393.8:ENST00000629399.2:ENST00000439638.1	protein_coding	protein_coding	protein_coding	protein_coding	8	119	2	1.69257	2.83319	3.97381	0.0122626	2.19875e-4	0.0969406	0.0135522
chr19	8487389	8487477	7011209	0	+	0.590909	(0.57,1]	chr19	696219	2	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	HNRNPM	ENSG00000099783.12	ENST00000348943.7:ENST00000325495.9:ENST00000600806.5:ENST00000620401.4:ENST00000596295.1:ENST00000602219.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	24	2	2.53383	2.8331850000000003	3.13254	0.02547	0.00310655	0.12011	0.0512344
chr2	186500887	186500982	942965	0	+	0.578947	(0.57,1]	chr2	103258	2	SS3_PROX	SS3_PROX:INTRON	ZC3H15	ENSG00000065548.18	ENST00000421536.5:ENST00000337859.11:ENST00000437396.1:ENST00000481101.5:ENST00000468120.5:ENST00000496289.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	24	2	2.53383	2.8331850000000003	3.13254	0.02547	0.00310655	0.12011	0.0512344
chr6	36515137	36515237	3089053	0	-	0.36	(0.35,0.378]	chr6	288949	4	SS5_PROX	SS5_PROX:INTRON	STK38	ENSG00000112079.9	ENST00000229812.8	protein_coding	protein_coding	protein_coding	protein_coding	6	122	2	2.43849	2.83316	3.22783	0.00430822	6.11389e-5	0.0578073	0.00646768
chr17	38851847	38851942	6765119	0	-	0.473684	(0.44,0.476]	chr17	665397	3	EXON_MRNA	EXON_MRNA:INTRON	RPL23	ENSG00000125691.14	ENST00000479035.7:ENST00000394333.5:ENST00000394332.5:ENST00000584912.5:ENST00000245857.9:ENST00000577407.5:ENST00000470646.1:ENST00000378096.3:ENST00000577760.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	58	2	2.27304	2.8331299999999997	3.39322	0.0158915	0.00187283	0.109464	0.0390476
chr9	112323056	112323156	4317855	0	-	0.47	(0.44,0.476]	chr9	397079	248	INTRON	INTRON	PTBP3	ENSG00000119314.16	ENST00000334318.10:ENST00000458258.5:ENST00000374257.6:ENST00000374255.6:ENST00000343327.6:ENST00000487997.1:ENST00000210227.4:ENST00000450374.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	58	2	2.27304	2.8331299999999997	3.39322	0.0158915	0.00187283	0.109464	0.0390476
chr18	2580022	2580121	6864477	0	+	0.292929	(0.28,0.32]	chr18	679858	6	INTRON	INTRON	NDC80	ENSG00000080986.13	ENST00000261597.9:ENST00000576274.2	protein_coding	protein_coding	protein_coding	protein_coding	4	99	2	2.36963	2.8331	3.29657	0.0157022	2.79563e-4	0.101453	0.0148832
chr2	38324110	38324210	1098810	0	-	0.49	(0.476,0.515]	chr2	117856	47	INTRON	INTRON	ATL2	ENSG00000119787.14	ENST00000378954.9:ENST00000406122.5:ENST00000405384.6:ENST00000402054.5:ENST00000419554.6:ENST00000651368.1:ENST00000452935.6:ENST00000449130.5:ENST00000443098.5:ENST00000456736.5:ENST00000474535.2:ENST00000472097.1:ENST00000451483.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	76	2	2.66112	2.833095	3.00507	0.0044598	8.38796e-4	0.0592169	0.0263691
chr17	43128735	43128833	6613319	0	+	0.367347	(0.35,0.378]	chr17	644726	26	INTRON	INTRON	NBR2	ENSG00000198496.12	ENST00000657841.1:ENST00000460115.5:ENST00000356906.7:ENST00000467245.5	lncRNA	lncRNA	lncRNA	lncRNA	2	47	2	2.72498	2.8330450000000003	2.94111	0.0168499	0.0104563	0.11068	0.0855102
chrX	65728209	65728309	7671695	0	+	0.36	(0.35,0.378]	chrX	785157	3	SS5_PROX	SS5_PROX:INTRON	MSN	ENSG00000147065.17	ENST00000609672.5:ENST00000360270.7	protein_coding	protein_coding	protein_coding	protein_coding	2	47	2	2.72498	2.8330450000000003	2.94111	0.0168499	0.0104563	0.11068	0.0855102
chr1	153748025	153748120	227077	0	+	0.336842	(0.32,0.35]	chr1	26035	8	EXON_MRNA	EXON_MRNA:INTRON	INTS3	ENSG00000143624.14	ENST00000318967.7:ENST00000435409.6:ENST00000481797.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	80	2	2.14793	2.833005	3.51808	0.0110079	0.00151238	0.0927187	0.0352794
chr1	117624142	117624241	199106	0	+	0.434343	(0.408,0.44]	chr1	22011	2	UTR3	UTR3:EXON_MRNA	TENT5C	ENSG00000183508.5	ENST00000369448.4	protein_coding	protein_coding	protein_coding	protein_coding	5	79	2	2.29426	2.83294	3.37162	0.00277178	0.00208674	0.04874	0.0411801
chr18	2657860	2657960	6864881	0	+	0.55	(0.515,0.57]	chr18	679940	12	INTRON	INTRON	SMCHD1	ENSG00000101596.17	ENST00000320876.11:ENST00000688342.1:ENST00000684915.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	59	2	2.41022	2.832845	3.25547	0.00332441	0.00261721	0.0528673	0.0455413
chr19	34380622	34380722	7052647	0	+	0.6	(0.57,1]	chr19	703395	4	SS3_PROX	SS3_PROX:INTRON	GPI	ENSG00000105220.17	ENST00000415930.8:ENST00000588991.7:ENST00000356487.11:ENST00000647446.1:ENST00000586425.2:ENST00000643067.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	72	2	2.26734	2.832815	3.39829	4.76297e-4	6.42666e-5	0.0197443	0.00711194
chr17	81845303	81845381	6849948	0	-	0.576923	(0.57,1]	chr17	678319	1	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	P4HB	ENSG00000185624.16	ENST00000680083.1:ENST00000680416.1:ENST00000575069.6:ENST00000681030.1:ENST00000680884.1:ENST00000681161.1:ENST00000681515.1:ENST00000679470.1:ENST00000571617.2:ENST00000679688.1:ENST00000680226.1:ENST00000571507.6:ENST00000680400.1:ENST00000574914.2:ENST00000331483.9:ENST00000680914.1:ENST00000680593.1:ENST00000681420.1:ENST00000681693.1:ENST00000576390.6:ENST00000681835.1:ENST00000681954.1:ENST00000681259.1:ENST00000681566.1:ENST00000680076.1:ENST00000680105.1:ENST00000680368.1:ENST00000474712.2:ENST00000473021.2:ENST00000681872.1:ENST00000484286.2:ENST00000466567.3:ENST00000679396.1:ENST00000415593.6:ENST00000679889.1:ENST00000681571.1:ENST00000680719.1:ENST00000680191.1:ENST00000680547.1:ENST00000680799.1:ENST00000680208.1:ENST00000679439.1:ENST00000439918.7:ENST00000472244.6:ENST00000681031.1:ENST00000680846.1:ENST00000681068.1:ENST00000477607.7:ENST00000679366.1:ENST00000681020.1:ENST00000681614.1:ENST00000681485.1:ENST00000679628.1:ENST00000476482.2:ENST00000679455.1:ENST00000680259.1:ENST00000680559.1:ENST00000680909.1:ENST00000681760.1:ENST00000681933.1:ENST00000570907.6:ENST00000680732.1:ENST00000680838.1:ENST00000680847.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	32	2	2.17026	2.832715	3.49517	0.0220522	6.03609e-4	0.123836	0.0226059
chr15	68181873	68181969	6057246	0	+	0.59375	(0.57,1]	chr15	576626	1	INTRON	INTRON	PIAS1	ENSG00000033800.14	ENST00000249636.11:ENST00000545237.1:ENST00000563996.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	24	2	2.66801	2.83265	2.99729	0.0169968	0.00538023	0.110899	0.0642754
chr7	45768159	45768259	3529431	0	-	0.6	(0.57,1]	chr7	329291	1	SS5_PROX	SS5_PROX:INTRON	SEPTIN7P2	ENSG00000214765.9	ENST00000338231.8:ENST00000688931.1:ENST00000429741.5:ENST00000689783.1:ENST00000693141.1:ENST00000684893.1:ENST00000690171.1:ENST00000428414.5:ENST00000686085.1:ENST00000686032.1:ENST00000691119.1:ENST00000688953.1:ENST00000690342.1:ENST00000690179.1:ENST00000413875.6:ENST00000689506.1:ENST00000691450.1:ENST00000687862.1:ENST00000686398.1:ENST00000450436.1	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript	2	24	2	2.66801	2.83265	2.99729	0.0169968	0.00538023	0.110899	0.0642754
chr8	11862344	11862411	3908802	0	-	0.597015	(0.57,1]	chr8	358213	1	UTR5	UTR5:EXON_MRNA:INTRON	CTSB	ENSG00000164733.22	ENST00000677671.1:ENST00000678092.1:ENST00000679128.1:ENST00000677873.1:ENST00000676691.1:ENST00000678598.1:ENST00000353047.11:ENST00000677650.1:ENST00000526481.7:ENST00000676825.1:ENST00000678242.1:ENST00000677366.1:ENST00000677544.1:ENST00000530640.7:ENST00000677418.1:ENST00000677047.1:ENST00000676502.1:ENST00000531089.6:ENST00000678629.1:ENST00000678145.1:ENST00000678929.1:ENST00000677819.1:ENST00000677415.1:ENST00000678357.1:ENST00000676755.1:ENST00000679051.1:ENST00000453527.7:ENST00000678067.1:ENST00000679140.1:ENST00000677082.1:ENST00000533455.6:ENST00000531551.5:ENST00000534382.6:ENST00000679214.1:ENST00000531502.6:ENST00000534510.6:ENST00000677865.1:ENST00000533572.6:ENST00000345125.8:ENST00000526645.6:ENST00000534149.6:ENST00000505496.7:ENST00000532392.2:ENST00000676843.1:ENST00000524500.6:ENST00000525076.6:ENST00000527215.7:ENST00000528965.2:ENST00000532656.7:ENST00000526195.6:ENST00000678615.1:ENST00000527243.6:ENST00000530296.6:ENST00000534636.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	24	2	2.66801	2.83265	2.99729	0.0169968	0.00538023	0.110899	0.0642754
chr6	20441876	20441976	2827849	0	+	0.47	(0.44,0.476]	chr6	265583	18	INTRON	INTRON	E2F3	ENSG00000112242.16	ENST00000346618.8:ENST00000535432.2	protein_coding	protein_coding	protein_coding	protein_coding	5	79	2	1.88483	2.8326450000000003	3.78046	0.0149825	3.54249e-4	0.107704	0.0174886
chr22	47816077	47816177	7541219	0	+	0.52	(0.515,0.57]	chr22	770766	169	INTRON	INTRON	ENSG00000224271	ENSG00000224271.7	ENST00000664761.1:ENST00000650683.1:ENST00000651536.1:ENST00000652656.1:ENST00000651445.1:ENST00000423737.5:ENST00000650660.1:ENST00000651056.1:ENST00000652611.1:ENST00000652399.1:ENST00000652123.1:ENST00000652505.1:ENST00000652030.2:ENST00000651403.1:ENST00000652228.1:ENST00000651124.1:ENST00000650972.1:ENST00000651637.1:ENST00000651003.1:ENST00000651948.2:ENST00000651293.1:ENST00000651939.1:ENST00000650787.1:ENST00000651517.1:ENST00000651662.1:ENST00000651638.1:ENST00000670853.1:ENST00000652080.1:ENST00000651294.1:ENST00000652164.1:ENST00000651538.1:ENST00000651033.1:ENST00000651584.1	lncRNA	lncRNA	lncRNA	lncRNA	3	50	2	2.53845	2.83254	3.12663	0.00632226	0.00374498	0.0687526	0.0562234
chr4	77803679	77803779	2166879	0	-	0.5	(0.476,0.515]	chr4	213719	269	INTRON	INTRON	CNOT6L	ENSG00000138767.14	ENST00000504123.7:ENST00000649644.1:ENST00000515506.6:ENST00000512485.6:ENST00000504804.7:ENST00000506166.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	126	2	2.72421	2.832535	2.94086	0.00107964	9.2843e-5	0.0302522	0.00806645
chr9	127459171	127459271	4200380	0	+	0.56	(0.515,0.57]	chr9	383474	1	SS5_PROX	SS5_PROX:INTRON	LRSAM1	ENSG00000148356.15	ENST00000675224.1:ENST00000373324.8:ENST00000674771.1:ENST00000675641.1:ENST00000498513.6:ENST00000675572.1:ENST00000300417.11:ENST00000674784.1:ENST00000675789.1:ENST00000676349.1:ENST00000676336.1:ENST00000676170.1:ENST00000675448.1:ENST00000323301.8:ENST00000675141.1:ENST00000472068.2:ENST00000674516.1:ENST00000675883.1:ENST00000676014.1:ENST00000674970.1:ENST00000675253.1:ENST00000675657.1:ENST00000676318.1:ENST00000675945.1:ENST00000675213.1:ENST00000373322.1:ENST00000675445.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	90	2	2.22907	2.832525	3.43598	0.00383939	7.05043e-5	0.0542786	0.00694412
chr10	48318136	48318235	4431103	0	+	0.40404	(0.378,0.408]	chr10	408563	95	INTRON	INTRON	MAPK8	ENSG00000107643.17	ENST00000395611.7:ENST00000432379.5:ENST00000374189.6:ENST00000429041.6:ENST00000374179.8:ENST00000426557.5:ENST00000476134.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	71	2	2.22859	2.8325199999999997	3.43645	0.00763308	0.00171162	0.0777238	0.037419
chr16	87863737	87863836	6539040	0	-	0.484848	(0.476,0.515]	chr16	633647	2	INTRON	INTRON	SLC7A5	ENSG00000103257.9	ENST00000261622.5	protein_coding	protein_coding	protein_coding	protein_coding	4	78	2	2.365	2.83249	3.29998	0.0128901	1.88247e-4	0.0926667	0.011951
chr8	26349998	26350098	3716687	0	+	0.28	[0,0.28]	chr8	345395	97	INTRON	INTRON	PPP2R2A	ENSG00000221914.11	ENST00000380737.8:ENST00000520329.5:ENST00000518254.5:ENST00000524169.5:ENST00000518397.5:ENST00000522535.5:ENST00000665949.1:ENST00000521095.5:ENST00000660435.1:ENST00000523925.5:ENST00000524099.5:ENST00000315985.7:ENST00000519636.5:ENST00000522482.5:ENST00000521557.5:ENST00000519439.5:ENST00000521484.5:ENST00000523964.5:ENST00000667651.1:ENST00000657943.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	100	2	1.82783	2.83249	3.83715	0.0410712	3.63888e-4	0.1451	0.0170637
chr2	175159944	175160043	1272259	0	-	0.262626	[0,0.28]	chr2	134482	84	INTRON	INTRON	ATF2	ENSG00000115966.18	ENST00000345739.9:ENST00000426833.7:ENST00000264110.7:ENST00000409635.5:ENST00000428760.5:ENST00000392544.5:ENST00000417080.5:ENST00000456655.5:ENST00000421438.5:ENST00000429579.5:ENST00000415955.5:ENST00000409499.5:ENST00000435231.6:ENST00000437522.5:ENST00000409833.5:ENST00000413123.5:ENST00000445349.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	61	2	2.44242	2.83236	3.2223	0.0491024	0.00422777	0.155269	0.0595466
chr22	29284739	29284838	7496231	0	+	0.272727	[0,0.28]	chr22	764824	18	INTRON	INTRON	EWSR1	ENSG00000182944.18	ENST00000629659.2:ENST00000332050.10:ENST00000397938.7:ENST00000406548.5:ENST00000437155.6:ENST00000415761.5:ENST00000331029.11:ENST00000483415.5:ENST00000414183.6:ENST00000333395.10:ENST00000332035.10:ENST00000455726.5:ENST00000479135.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	104	2	2.80461	2.832345	2.86008	0.0177015	9.57163e-4	0.105304	0.0284484
chr16	89346211	89346310	6542139	0	-	0.484848	(0.476,0.515]	chr16	634215	25	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000647238.1:ENST00000644045.1:ENST00000643147.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	16	278	2	2.64592	2.832305	3.01869	8.47639e-5	3.72006e-6	0.00824069	0.00126333
chr19	1616719	1616818	7112741	0	-	0.40404	(0.378,0.408]	chr19	714593	5	INTRON	INTRON	TCF3	ENSG00000071564.17	ENST00000344749.9:ENST00000611869.5:ENST00000262965.12:ENST00000588136.7:ENST00000453954.6:ENST00000593064.5:ENST00000592628.5:ENST00000590684.5:ENST00000590436.5:ENST00000651991.1:ENST00000395423.7:ENST00000585855.2:ENST00000610756.4:ENST00000590605.2:ENST00000586410.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	96	2	2.51043	2.83229	3.15415	0.00304007	4.11608e-4	0.0493883	0.0181365
chr21	43756162	43756261	7413546	0	+	0.393939	(0.378,0.408]	chr21	755598	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	PDXK	ENSG00000160209.19	ENST00000468090.5:ENST00000291565.9:ENST00000467908.1:ENST00000343528.10:ENST00000468392.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	96	2	2.51043	2.83229	3.15415	0.00304007	4.11608e-4	0.0493883	0.0181365
chr20	47279252	47279350	7348727	0	-	0.510204	(0.476,0.515]	chr20	749294	21	INTRON	INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000467200.6:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000468376.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	189	2	2.22621	2.832265	3.43832	6.73578e-4	1.43665e-5	0.0237591	0.00284044
chr17	81592954	81593052	6849151	0	-	0.306122	(0.28,0.32]	chr17	678168	35	INTRON	INTRON	NPLOC4	ENSG00000182446.14	ENST00000331134.11:ENST00000374747.9:ENST00000574897.5:ENST00000572351.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	99	2	2.23291	2.832245	3.43158	0.00444008	0.00244075	0.0610799	0.0445752
chr7	10626748	10626848	3483047	0	-	0.58	(0.57,1]	chr7	325772	648	INTRON	INTRON	MGC4859	ENSG00000283117.1	ENST00000634803.1	lncRNA	lncRNA	lncRNA	lncRNA	8	75	2	2.62103	2.83217	3.04331	4.01771e-4	2.48146e-5	0.0185763	0.00391691
chr5	614626	614725	2313398	0	+	0.444444	(0.44,0.476]	chr5	223834	18	INTRON	INTRON	CEP72	ENSG00000112877.8	ENST00000264935.6	protein_coding	protein_coding	protein_coding	protein_coding	4	69	2	2.07016	2.832165	3.59417	0.0151815	5.78231e-4	0.0994339	0.0218253
chr12	110332981	110333080	5226622	0	+	0.353535	(0.35,0.378]	chr12	495271	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ATP2A2	ENSG00000174437.18	ENST00000308664.10:ENST00000539276.7:ENST00000377685.9:ENST00000548169.2:ENST00000550262.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	63	2	2.4475	2.832135	3.21677	0.0106974	0.00313804	0.0862205	0.0514466
chr11	48110176	48110276	4790518	0	+	0.46	(0.44,0.476]	chr11	443280	1	SS5_PROX	SS5_PROX:INTRON	PTPRJ	ENSG00000149177.14	ENST00000418331.7:ENST00000440289.6:ENST00000527952.1:ENST00000534219.5:ENST00000526550.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	43	2	2.46135	2.832125	3.2029	0.0374637	0.00308681	0.140008	0.0510391
chr2	181030113	181030213	936467	0	+	0.45	(0.44,0.476]	chr2	102627	402	INTRON	INTRON	UBE2E3	ENSG00000170035.16	ENST00000602303.5:ENST00000602959.5:ENST00000602479.5:ENST00000392415.6:ENST00000602291.5:ENST00000410062.9:ENST00000602499.5:ENST00000602710.5:ENST00000602762.5:ENST00000602888.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	43	2	2.46135	2.832125	3.2029	0.0374637	0.00308681	0.140008	0.0510391
chr12	123403072	123403172	5242771	0	+	0.51	(0.476,0.515]	chr12	498206	1	SS3_PROX	SS3_PROX:INTRON	KMT5A	ENSG00000183955.14	ENST00000402868.8:ENST00000437519.5:ENST00000461103.5:ENST00000437502.1:ENST00000485469.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	77	2	2.45598	2.832095	3.20821	0.00945755	3.05489e-4	0.0817766	0.0155972
chr3	138804352	138804452	1831196	0	-	0.52	(0.515,0.57]	chr3	184062	74	INTRON	INTRON	PIK3CB	ENSG00000051382.9	ENST00000674063.1:ENST00000477593.5:ENST00000462898.5:ENST00000483968.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	50	2	2.26012	2.832	3.40388	0.0160033	0.00142538	0.109464	0.0340865
chr1	202767852	202767950	620337	0	-	0.285714	(0.28,0.32]	chr1	73642	4	INTRON	INTRON	KDM5B	ENSG00000117139.18	ENST00000367265.9:ENST00000648338.1:ENST00000649542.1:ENST00000647757.1:ENST00000367264.7:ENST00000648473.1:ENST00000650569.1:ENST00000648056.1:ENST00000649770.1:ENST00000648469.1:ENST00000650417.1:ENST00000235790.9:ENST00000650422.1:ENST00000648738.1:ENST00000648958.1:ENST00000602511.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	100	2	2.36128	2.8319549999999998	3.30263	0.0038504	0.0025684	0.0542786	0.0466761
chr4	118619888	118619985	2025028	0	+	0.340206	(0.32,0.35]	chr4	201337	14	INTRON	INTRON	ENSG00000260404	ENSG00000260404.4	ENST00000567913.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	6	105	2	1.57911	2.83175	4.08439	0.0313129	1.31573e-4	0.144381	0.0104376
chr18	8625997	8626097	6868386	0	+	0.34	(0.32,0.35]	chr18	680460	6	INTRON	INTRON	RAB12	ENSG00000206418.5	ENST00000649141.2	protein_coding	protein_coding	protein_coding	protein_coding	6	101	2	2.02448	2.831725	3.63897	0.00595393	9.34231e-4	0.0698475	0.0280484
chr1	1663824	1663922	360664	0	-	0.540816	(0.515,0.57]	chr1	41974	25	UTR3	UTR3:EXON_MRNA:INTRON	SLC35E2B	ENSG00000189339.12	ENST00000614300.4:ENST00000617444.5:ENST00000611123.1:ENST00000480991.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	39	2	2.46104	2.83172	3.2024	0.032841	0.00322022	0.145164	0.0507087
chr11	70408154	70408248	4821712	0	+	0.446809	(0.44,0.476]	chr11	449606	7	EXON_MRNA	EXON_MRNA:INTRON	CTTN	ENSG00000085733.16	ENST00000346329.7:ENST00000301843.13:ENST00000527622.5:ENST00000482755.6:ENST00000376561.7:ENST00000415461.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	16	245	2	2.37288	2.83169	3.2905	8.68274e-5	1.97549e-5	0.00783027	0.00360253
chr1	12023613	12023712	26866	0	+	0.454545	(0.44,0.476]	chr1	3206	3	INTRON	INTRON	MIIP	ENSG00000116691.11	ENST00000478749.5:ENST00000235332.6:ENST00000466860.5:ENST00000498685.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	39	2	1.65297	2.8316749999999997	4.01038	0.0433743	0.0331814	0.148082	0.145918
chr20	35009598	35009686	7332061	0	-	0.397727	(0.378,0.408]	chr20	746905	5	INTRON	INTRON	TRPC4AP	ENSG00000100991.12	ENST00000252015.3:ENST00000451813.6	protein_coding	protein_coding	protein_coding	protein_coding	4	76	2	2.78946	2.8316749999999997	2.87389	0.0158859	4.01435e-4	0.101453	0.0179994
chr16	50036129	50036225	6347087	0	+	0.427083	(0.408,0.44]	chr16	609201	8	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CNEP1R1	ENSG00000205423.12	ENST00000458059.7:ENST00000427478.7:ENST00000568890.5:ENST00000565457.5:ENST00000565556.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	77	2	2.57295	2.8316600000000003	3.09037	0.00640423	5.47766e-4	0.0694534	0.0212924
chr21	46196668	46196767	7470541	0	-	0.484848	(0.476,0.515]	chr21	761463	4	SS3_PROX	SS3_PROX:INTRON	LSS	ENSG00000160285.15	ENST00000356396.8:ENST00000397728.8:ENST00000457828.6:ENST00000522411.5	protein_coding	protein_coding	protein_coding	protein_coding	10	145	2	2.03547	2.83162	3.62777	0.00174696	4.68477e-5	0.0386026	0.00593131
chr2	131136292	131136392	864715	0	+	0.46	(0.44,0.476]	chr2	97154	29	INTRON	INTRON	PLEKHB2	ENSG00000115762.17	ENST00000403716.5:ENST00000439822.6:ENST00000409158.5:ENST00000234115.10:ENST00000628582.2:ENST00000693505.1:ENST00000438882.6:ENST00000404460.5:ENST00000409612.5:ENST00000409279.1	protein_coding	protein_coding	protein_coding	protein_coding	2	43	2	2.74372	2.8316100000000004	2.9195	0.0153007	0.0102021	0.108569	0.0850389
chr22	49650527	49650627	7602593	0	-	0.62	(0.57,1]	chr22	778594	231	INTRON	INTRON	MIR3667HG	ENSG00000188511.13	ENST00000414287.5:ENST00000416411.1:ENST00000689875.1:ENST00000400023.5:ENST00000405854.5	lncRNA	lncRNA	lncRNA	lncRNA	3	31	2	2.56996	2.831545	3.09313	0.00499145	0.00369015	0.0646039	0.0535094
chr1	35177208	35177263	420430	0	-	0.236364	[0,0.28]	chr1	50639	1	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	SFPQ	ENSG00000116560.12	ENST00000470472.5:ENST00000460428.5:ENST00000468598.5:ENST00000471991.5:ENST00000485365.1:ENST00000490668.5:ENST00000466213.5:ENST00000466745.5:ENST00000485454.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	6	126	2	2.11194	2.83153	3.55112	0.00522345	0.00205086	0.0656295	0.0409264
chr17	80352003	80352103	6684008	0	+	0.52	(0.515,0.57]	chr17	653125	2	SS5_PROX	SS5_PROX:INTRON	RNF213	ENSG00000173821.20	ENST00000582970.6:ENST00000508628.6	protein_coding	protein_coding	protein_coding	protein_coding	3	49	2	2.57298	2.8315	3.09002	0.00506495	0.00491099	0.0646039	0.0609494
chr21	44862426	44862525	7469011	0	-	0.585859	(0.57,1]	chr21	761242	6	INTRON	INTRON	PTTG1IP	ENSG00000183255.12	ENST00000397887.7:ENST00000445724.3:ENST00000330938.8:ENST00000474737.5:ENST00000494690.5:ENST00000480234.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	31	2	2.47993	2.8314649999999997	3.183	0.007207	0.00254356	0.0756278	0.0448135
chr6	97277151	97277251	3164715	0	-	0.59	(0.57,1]	chr6	295147	37	INTRON	INTRON	MMS22L	ENSG00000146263.12	ENST00000683635.1:ENST00000275053.8:ENST00000369251.6:ENST00000509383.5:ENST00000510018.5:ENST00000508976.5:ENST00000508820.1:ENST00000496119.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	31	2	2.47993	2.8314649999999997	3.183	0.007207	0.00254356	0.0756278	0.0448135
chr3	42624307	42624407	1406215	0	+	0.31	(0.28,0.32]	chr3	147675	24	INTRON	INTRON	NKTR	ENSG00000114857.19	ENST00000468735.6:ENST00000487466.5:ENST00000429888.5:ENST00000232978.13:ENST00000478488.1:ENST00000465584.5:ENST00000466553.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	119	2	2.62805	2.8312749999999998	3.0345	0.00681001	2.44182e-4	0.0711884	0.0138127
chr16	89687348	89687448	6421469	0	+	0.52	(0.515,0.57]	chr16	616472	1	SS3_ADJ	SS3_ADJ:SS5_ADJ:SS3_PROX:SS5_PROX:INTRON	CDK10	ENSG00000185324.22	ENST00000331006.12:ENST00000505473.5:ENST00000508723.5:ENST00000511415.5:ENST00000502547.5:ENST00000353379.12:ENST00000505733.5:ENST00000512912.5:ENST00000510811.6:ENST00000507205.5:ENST00000472018.5:ENST00000625631.1:ENST00000564192.5:ENST00000378277.8:ENST00000514965.5:ENST00000503560.1:ENST00000504473.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	80	2	2.41022	2.83117	3.25212	0.00332441	2.5577e-4	0.0528673	0.0148225
chr11	64148447	64148546	4964455	0	-	0.535354	(0.515,0.57]	chr11	467271	217	INTRON	INTRON	MACROD1	ENSG00000133315.12	ENST00000255681.7:ENST00000675777.1:ENST00000545464.5:ENST00000542359.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	36	2	1.37301	2.83111	4.28921	0.0752392	0.00990051	0.193891	0.0877296
chr17	64489137	64489237	6815696	0	-	0.38	(0.378,0.408]	chr17	673761	2	SS3_PROX	SS3_PROX:INTRON	POLG2	ENSG00000256525.8	ENST00000539111.7:ENST00000581355.1:ENST00000671755.1:ENST00000673460.1:ENST00000585104.2:ENST00000577506.5:ENST00000585141.5:ENST00000578687.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	63	2	2.73557	2.83111	2.92665	0.0086017	0.00360869	0.083729	0.0533855
chr6	136289512	136289612	3231125	0	-	0.56	(0.515,0.57]	chr6	300409	4	SS5_PROX	SS5_PROX:INTRON	BCLAF1	ENSG00000029363.17	ENST00000640069.1:ENST00000531224.6:ENST00000353331.8:ENST00000527536.5:ENST00000527613.5:ENST00000530767.5:ENST00000527759.5:ENST00000534269.5:ENST00000532384.5:ENST00000530429.5:ENST00000628517.2:ENST00000529826.5:ENST00000528229.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	171	2	2.27098	2.831015	3.39105	5.14908e-4	3.43161e-6	0.0208667	0.00120545
chr1	36253693	36253793	73224	0	+	0.42	(0.408,0.44]	chr1	9371	279	INTRON	INTRON	THRAP3	ENSG00000054118.15	ENST00000469141.6:ENST00000648638.1:ENST00000354618.10	protein_coding	protein_coding	protein_coding	protein_coding	2	43	2	2.51492	2.83099	3.14706	0.0329839	0.00382411	0.133816	0.0562562
chr1	156119059	156119158	230458	0	+	0.414141	(0.408,0.44]	chr1	27156	34	INTRON	INTRON	LMNA	ENSG00000160789.24	ENST00000502751.5:ENST00000368301.6:ENST00000676385.2:ENST00000675939.1:ENST00000675667.1:ENST00000675989.1:ENST00000676283.1:ENST00000674720.1:ENST00000496738.6:ENST00000674518.1:ENST00000676208.1:ENST00000674600.1:ENST00000675874.1:ENST00000676434.1:ENST00000684195.1:ENST00000683032.1:ENST00000682650.1:ENST00000361308.9:ENST00000368300.9:ENST00000675881.1:ENST00000675455.1:ENST00000677389.1:ENST00000470199.2:ENST00000469565.6:ENST00000368299.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	43	2	2.51492	2.83099	3.14706	0.0329839	0.00382411	0.133816	0.0562562
chr6	26882452	26882549	3071524	0	-	0.412371	(0.408,0.44]	chr6	285526	33	INTRON	INTRON	GUSBP2	ENSG00000241549.8	ENST00000479900.5:ENST00000463434.5:ENST00000492832.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	2	43	2	2.51492	2.83099	3.14706	0.0329839	0.00382411	0.133816	0.0562562
chr9	131135378	131135471	4215723	0	+	0.354839	(0.35,0.378]	chr9	386540	5	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NUP214	ENSG00000126883.19	ENST00000695497.1:ENST00000695498.1:ENST00000695496.1:ENST00000695495.1:ENST00000695494.1:ENST00000695493.1:ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000525561.2:ENST00000651022.1:ENST00000695499.1:ENST00000530843.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	121	2	2.77809	2.830935	2.88378	0.00103021	4.08693e-4	0.029231300000000002	0.0181306
chr19	15319438	15319538	7147275	0	-	0.46	(0.44,0.476]	chr19	721965	391	INTRON	INTRON	BRD4	ENSG00000141867.19	ENST00000679869.1:ENST00000360016.9:ENST00000594841.5:ENST00000597315.5:ENST00000601941.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	153	2	2.13681	2.830845	3.52488	0.00268027	7.96164e-6	0.0464781	0.0020223
chr12	57773228	57773328	5148602	0	+	0.36	(0.35,0.378]	chr12	487144	1	SS5_PROX	SS5_PROX:INTRON	EEF1AKMT3	ENSG00000123427.17	ENST00000548256.5:ENST00000551420.1:ENST00000300209.13:ENST00000552307.1:ENST00000333012.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	49	2	2.1617	2.830685	3.49967	0.0771502	9.80974e-4	0.196285	0.0287765
chr13	111279671	111279771	5545977	0	+	0.43	(0.408,0.44]	chr13	529856	16	INTRON	INTRON	ARHGEF7	ENSG00000102606.19	ENST00000317133.9:ENST00000375739.6:ENST00000375741.6:ENST00000646102.2:ENST00000469877.5:ENST00000466143.5:ENST00000218789.9:ENST00000375736.8:ENST00000426073.6:ENST00000375723.5:ENST00000478679.5:ENST00000544132.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	43	2	2.82042	2.8305949999999998	2.84077	0.0132196	0.0120121	0.0962115	0.0940535
chr16	2587492	2587592	6279376	0	+	0.44	(0.408,0.44]	chr16	600689	2	INTRON	INTRON	PDPK1	ENSG00000140992.19	ENST00000441549.7:ENST00000268673.11:ENST00000342085.9:ENST00000389224.7	protein_coding	protein_coding	protein_coding	protein_coding	2	43	2	2.82042	2.8305949999999998	2.84077	0.0132196	0.0120121	0.0962115	0.0940535
chr7	138572442	138572536	3435776	0	+	0.425532	(0.408,0.44]	chr7	320027	11	INTRON	INTRON	TRIM24	ENSG00000122779.18	ENST00000343526.9:ENST00000415680.6:ENST00000493595.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	43	2	2.82042	2.8305949999999998	2.84077	0.0132196	0.0120121	0.0962115	0.0940535
chr12	110300131	110300231	5226291	0	+	0.45	(0.44,0.476]	chr12	495250	30	INTRON	INTRON	ATP2A2	ENSG00000174437.18	ENST00000308664.10:ENST00000539276.7:ENST00000377685.9:ENST00000548169.2:ENST00000550248.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	142	2	2.08356	2.830555	3.57755	0.00502853	5.59824e-6	0.0619934	0.00164301
chr12	53188384	53188484	5141898	0	+	0.49	(0.476,0.515]	chr12	485094	9	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	ZNF740	ENSG00000139651.11	ENST00000416904.5:ENST00000551514.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	69	2	2.01953	2.8304	3.64127	0.0163662	6.42302e-4	0.109586	0.0231685
chr1	100408522	100408622	173190	0	+	0.39	(0.378,0.408]	chr1	18824	173	INTRON	INTRON	CDC14A	ENSG00000079335.20	ENST00000646665.1:ENST00000644844.1:ENST00000635056.2:ENST00000647005.1:ENST00000647203.1:ENST00000644676.1:ENST00000361544.11:ENST00000370124.8:ENST00000336454.5:ENST00000644813.1:ENST00000455467.6:ENST00000646563.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	90	2	2.04909	2.830335	3.61158	0.0048937	8.34292e-4	0.0641889	0.0266389
chr5	131687550	131687649	2719639	0	-	0.383838	(0.378,0.408]	chr5	255672	80	INTRON	INTRON	FNIP1	ENSG00000217128.13	ENST00000510461.6:ENST00000307954.12:ENST00000307968.11:ENST00000511848.1	protein_coding	protein_coding	protein_coding	protein_coding	12	209	2	2.63135	2.830295	3.02924	1.05533e-4	5.60215e-5	0.00920724	0.00613104
chr1	67422435	67422532	477549	0	-	0.453608	(0.44,0.476]	chr1	57477	19	INTRON	INTRON	SERBP1	ENSG00000142864.15	ENST00000370994.8:ENST00000361219.11:ENST00000370995.6:ENST00000370990.5:ENST00000493607.1:ENST00000484880.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	119	2	2.34769	2.8302199999999997	3.31275	0.00155283	1.73222e-4	0.0358949	0.0114086
chr13	20020316	20020416	5453052	0	+	0.52	(0.515,0.57]	chr13	522478	3	INTRON	INTRON	ZMYM2	ENSG00000121741.17	ENST00000382874.6:ENST00000610343.5:ENST00000382871.3	protein_coding	protein_coding	protein_coding	protein_coding	9	130	2	2.45141	2.8301	3.20879	3.2511e-4	6.40762e-5	0.0160177	0.00711194
chr16	16564794	16564894	6311510	0	+	0.47	(0.44,0.476]	chr16	604098	648	INTRON	INTRON	ENSG00000260126	ENSG00000260126.2	ENST00000567465.2	lncRNA	lncRNA	lncRNA	lncRNA	5	79	2	1.90375	2.8299149999999997	3.75608	0.0156406	2.6487e-4	0.101393	0.0144071
chr12	118382617	118382716	5234460	0	+	0.474747	(0.44,0.476]	chr12	496607	20	INTRON	INTRON	SUDS3	ENSG00000111707.12	ENST00000543473.2	protein_coding	protein_coding	protein_coding	protein_coding	4	69	2	2.10892	2.8297999999999996	3.55068	0.0132897	7.06861e-4	0.0944742	0.0241881
chr11	68316199	68316299	4815971	0	+	0.4	(0.378,0.408]	chr11	448753	30	INTRON	INTRON	LRP5	ENSG00000162337.12	ENST00000294304.12:ENST00000529993.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	44	2	2.66785	2.8297749999999997	2.9917	0.0224639	0.0068789	0.11692	0.0749442
chr14	63503828	63503928	5907509	0	-	0.38	(0.378,0.408]	chr14	561132	496	INTRON	INTRON	PPP2R5E	ENSG00000154001.14	ENST00000337537.8:ENST00000422769.6:ENST00000555899.1:ENST00000556484.5:ENST00000553266.5:ENST00000556878.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	44	2	2.66785	2.8297749999999997	2.9917	0.0224639	0.0068789	0.11692	0.0749442
chr19	10975261	10975361	7015700	0	+	0.4	(0.378,0.408]	chr19	697168	96	INTRON	INTRON	SMARCA4	ENSG00000127616.20	ENST00000644737.1:ENST00000642726.1:ENST00000646484.1:ENST00000643549.1:ENST00000643296.1:ENST00000647230.1:ENST00000642628.1:ENST00000646510.1:ENST00000429416.8:ENST00000644760.1:ENST00000344626.10:ENST00000646693.2:ENST00000645460.1:ENST00000541122.6:ENST00000589677.5:ENST00000444061.8:ENST00000590574.6	protein_coding	protein_coding	protein_coding	protein_coding	2	44	2	2.66785	2.8297749999999997	2.9917	0.0224639	0.0068789	0.11692	0.0749442
chr6	24666052	24666118	3070566	0	-	0.378788	(0.378,0.408]	chr6	285332	2	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	TDP2	ENSG00000111802.14	ENST00000378198.9:ENST00000341060.3:ENST00000478507.1:ENST00000480495.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	44	2	2.66785	2.8297749999999997	2.9917	0.0224639	0.0068789	0.11692	0.0749442
chr1	17419025	17419124	384774	0	-	0.525253	(0.515,0.57]	chr1	45465	20	INTRON	INTRON	RCC2	ENSG00000179051.14	ENST00000375436.9:ENST00000375433.3	protein_coding	protein_coding	protein_coding	protein_coding	14	214	2	2.77494	2.8297	2.88446	4.23055e-5	1.09059e-5	0.00526976	0.00261238
chr14	52641296	52641395	5894510	0	-	0.565657	(0.515,0.57]	chr14	559768	15	UTR3	UTR3:EXON_MRNA	ERO1A	ENSG00000197930.13	ENST00000395686.8	protein_coding	protein_coding	protein_coding	protein_coding	9	138	2	2.7806	2.829695	2.87879	1.13426e-4	1.06927e-4	0.00957524	0.00876441
chr3	47657605	47657705	1683806	0	-	0.48	(0.476,0.515]	chr3	171996	185	INTRON	INTRON	SMARCC1	ENSG00000173473.11	ENST00000254480.10:ENST00000425518.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	92	2	2.48789	2.829545	3.1712	0.00256502	4.95874e-4	0.0466761	0.0206925
chr12	54298471	54298569	5330971	0	-	0.387755	(0.378,0.408]	chr12	508659	7	INTRON	INTRON	NFE2	ENSG00000123405.14	ENST00000435572.7:ENST00000553070.5	protein_coding	protein_coding	protein_coding	protein_coding	3	60	2	2.78946	2.829505	2.86955	0.0158859	0.00159247	0.101453	0.0367961
chr12	116088771	116088871	5423654	0	-	0.33	(0.32,0.35]	chr12	518245	658	INTRON	INTRON	MED13L	ENSG00000123066.9	ENST00000281928.9:ENST00000650226.1:ENST00000648737.1:ENST00000548743.2:ENST00000647567.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	50	2	2.37794	2.829505	3.28107	0.0498601	0.00262488	0.156383	0.0470772
chr4	163512122	163512221	2078331	0	+	0.323232	(0.32,0.35]	chr4	205400	46	INTRON	INTRON	TMA16	ENSG00000198498.10	ENST00000509657.5:ENST00000513272.5:ENST00000508652.5:ENST00000511562.5:ENST00000513134.5:ENST00000358572.10:ENST00000508268.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	50	2	2.37794	2.829505	3.28107	0.0498601	0.00262488	0.156383	0.0470772
chr9	27524060	27524160	4240070	0	-	0.33	(0.32,0.35]	chr9	389681	680	INTRON	INTRON	MOB3B	ENSG00000120162.10	ENST00000262244.6	protein_coding	protein_coding	protein_coding	protein_coding	2	50	2	2.37794	2.829505	3.28107	0.0498601	0.00262488	0.156383	0.0470772
chr19	2196447	2196544	6996503	0	+	0.474227	(0.44,0.476]	chr19	693461	15	INTRON	INTRON	DOT1L	ENSG00000104885.19	ENST00000398665.8:ENST00000686010.1:ENST00000452696.5	protein_coding	protein_coding	protein_coding	protein_coding	4	68	2	2.30673	2.8295	3.35227	0.0055175	0.0022005699999999998	0.0672816	0.0417893
chr14	96360916	96361016	5966340	0	-	0.3	(0.28,0.32]	chr14	566862	132	INTRON	INTRON	ATG2B	ENSG00000066739.12	ENST00000359933.6	protein_coding	protein_coding	protein_coding	protein_coding	2	54	2	2.39347	2.82949	3.26551	0.0504457	0.0030714	0.156383	0.0509893
chr1	227246275	227246375	650997	0	-	0.47	(0.44,0.476]	chr1	77102	265	INTRON	INTRON	CDC42BPA	ENSG00000143776.20	ENST00000366766.8:ENST00000366769.7:ENST00000334218.9:ENST00000366767.7:ENST00000366764.8:ENST00000478573.6:ENST00000682551.1:ENST00000462553.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	44	2	2.58033	2.829475	3.07862	0.0247511	0.0060153	0.131869	0.0674604
chr12	33434727	33434826	5304382	0	-	0.464646	(0.44,0.476]	chr12	504838	20	INTRON	INTRON	SYT10	ENSG00000110975.8	ENST00000228567.7:ENST00000539102.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	44	2	2.58033	2.829475	3.07862	0.0247511	0.0060153	0.131869	0.0674604
chr6	145814002	145814102	3244074	0	-	0.46	(0.44,0.476]	chr6	301281	72	INTRON	INTRON	FBXO30	ENSG00000118496.5	ENST00000237281.5	protein_coding	protein_coding	protein_coding	protein_coding	2	44	2	2.58033	2.829475	3.07862	0.0247511	0.0060153	0.131869	0.0674604
chr15	101282082	101282182	6269900	0	-	0.41	(0.408,0.44]	chr15	597985	3	SS3_PROX	SS3_PROX:INTRON	SNRPA1	ENSG00000131876.18	ENST00000254193.11:ENST00000558036.5:ENST00000559309.5:ENST00000560307.5:ENST00000560433.5:ENST00000394082.8:ENST00000540017.6:ENST00000560496.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	71	2	2.70586	2.82941	2.95296	0.00929354	9.14702e-4	0.0817766	0.027804
chr13	95208425	95208509	5638940	0	-	0.404762	(0.378,0.408]	chr13	537139	1	INTRON	INTRON	ABCC4	ENSG00000125257.16	ENST00000645237.2:ENST00000643051.1:ENST00000643842.1:ENST00000646439.1:ENST00000643816.1:ENST00000536256.3:ENST00000643556.1:ENST00000629385.1:ENST00000642524.1:ENST00000645532.1:ENST00000644471.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	72	2	2.60363	2.829325	3.05502	0.00689519	0.00153353	0.0717484	0.0361717
chr1	15637316	15637414	33684	0	+	0.469388	(0.44,0.476]	chr1	4099	31	INTRON	INTRON	DDI2	ENSG00000197312.12	ENST00000480945.6:ENST00000320153.10:ENST00000483899.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	160	2	2.71023	2.8293	2.94837	4.94929e-4	3.65445e-5	0.020683	0.00484751
chr17	50732660	50732760	6627099	0	+	0.38	(0.378,0.408]	chr17	647183	83	INTRON	INTRON	LUC7L3	ENSG00000108848.16	ENST00000625349.2:ENST00000508045.5:ENST00000508218.5:ENST00000509335.5:ENST00000506686.5:ENST00000393227.6:ENST00000504563.6:ENST00000505658.6:ENST00000240304.5:ENST00000508482.5:ENST00000505619.5:ENST00000510984.5:ENST00000507200.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	18	319	2	2.80726	2.82927	2.85128	4.74623e-5	6.01958e-6	0.00594242	0.0017156
chr5	10760413	10760513	2568321	0	-	0.4	(0.378,0.408]	chr5	246135	118	INTRON	INTRON	DAP	ENSG00000112977.16	ENST00000230895.11:ENST00000432074.2:ENST00000514882.5:ENST00000508253.5:ENST00000510546.1:ENST00000508646.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	71	2	2.18512	2.82917	3.47322	0.00902136	0.00147803	0.0851259	0.0348908
chr2	167914650	167914750	1258949	0	-	0.27	[0,0.28]	chr2	133340	135	INTRON	INTRON	B3GALT1-AS1	ENSG00000235335.3	ENST00000430546.2:ENST00000657553.1:ENST00000670221.1:ENST00000436982.2	lncRNA	lncRNA	lncRNA	lncRNA	3	82	2	2.41169	2.8291399999999998	3.24659	0.0122872	0.00570201	0.0970106	0.0656459
chr6	140171381	140171481	2968169	0	+	0.53	(0.515,0.57]	chr6	279015	223	INTRON	INTRON	ENSG00000288714	ENSG00000288714.1	ENST00000683950.1	lncRNA	lncRNA	lncRNA	lncRNA	3	49	2	2.45585	2.829125	3.2024	0.00797827	0.00322022	0.0798772	0.0507087
chr1	28511583	28511681	57231	0	+	0.55102	(0.515,0.57]	chr1	7392	8	INTRON	INTRON	RCC1	ENSG00000180198.17	ENST00000398958.6:ENST00000649185.1:ENST00000427469.5:ENST00000683442.1:ENST00000434290.6:ENST00000373833.10:ENST00000419074.5	protein_coding	protein_coding	protein_coding	protein_coding	7	117	2	2.16051	2.829035	3.49756	0.0046825	1.07554e-5	0.0631419	0.0025835
chr12	111590255	111590355	5413142	0	-	0.33	(0.32,0.35]	chr12	516941	255	INTRON	INTRON	ATXN2	ENSG00000204842.18	ENST00000642389.2:ENST00000608853.5:ENST00000672613.1:ENST00000673436.1:ENST00000643669.2:ENST00000616825.4:ENST00000389153.10:ENST00000550104.5:ENST00000483311.6:ENST00000672335.1:ENST00000673557.1:ENST00000673283.1:ENST00000673449.1:ENST00000535949.5:ENST00000542287.6:ENST00000644883.1:ENST00000647305.1:ENST00000671792.1:ENST00000392645.6:ENST00000672105.1:ENST00000549455.1:ENST00000548492.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	89	2	2.63115	2.829005	3.02686	0.00608073	8.86699e-4	0.0676501	0.0271952
chr10	50342020	50342106	4617863	0	-	0.337209	(0.32,0.35]	chr10	425414	2	INTRON	INTRON	SGMS1	ENSG00000198964.14	ENST00000429490.5:ENST00000361781.7:ENST00000361543.3:ENST00000626236.2:ENST00000619438.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	89	2	2.66302	2.828985	2.99495	0.00542632	0.00102621	0.0645052	0.0294094
chr7	105321766	105321866	3603234	0	-	0.31	(0.28,0.32]	chr7	336161	148	INTRON	INTRON	SRPK2	ENSG00000135250.17	ENST00000393651.8:ENST00000482897.5:ENST00000460391.5:ENST00000462282.5:ENST00000465112.5:ENST00000482862.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	54	2	2.73945	2.82898	2.91851	0.017681	0.0130672	0.11319	0.093385
chr1	1570891	1570990	360283	0	-	0.535354	(0.515,0.57]	chr1	41853	56	INTRON	INTRON	SSU72	ENSG00000160075.12	ENST00000291386.4:ENST00000378725.3:ENST00000359060.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	40	2	2.35125	2.82895	3.30665	0.0436431	0.00213226	0.162255	0.041756
chr1	246205726	246205826	677692	0	-	0.55	(0.515,0.57]	chr1	79733	121	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000453676.5:ENST00000462422.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	40	2	2.35125	2.82895	3.30665	0.0436431	0.00213226	0.162255	0.041756
chr6	127267495	127267595	2958371	0	+	0.54	(0.515,0.57]	chr6	278139	4	SS5_PROX	SS5_PROX:INTRON	RNF146	ENSG00000118518.17	ENST00000476956.5:ENST00000609447.5:ENST00000356799.6:ENST00000495188.2:ENST00000368314.6:ENST00000477776.5:ENST00000609944.5:ENST00000608991.5:ENST00000610153.1:ENST00000489534.5:ENST00000610162.5:ENST00000608340.5:ENST00000480444.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	67	2	2.07721	2.828925	3.58064	0.0067022	6.54693e-4	0.0738715	0.0233335
chr6	85523757	85523855	3150198	0	-	0.346939	(0.32,0.35]	chr6	293705	17	INTRON	INTRON	ENSG00000271793:SNX14	ENSG00000271793.2:ENSG00000135317.14	ENST00000682083.1:ENST00000683074.1:ENST00000681965.1:ENST00000682171.1:ENST00000684150.1:ENST00000683785.1:ENST00000682497.1:ENST00000684647.1:ENST00000683643.1:ENST00000682023.1:ENST00000682022.1:ENST00000683542.1:ENST00000683126.1:ENST00000683857.1:ENST00000683898.1:ENST00000682854.1:ENST00000682491.1:ENST00000682174.1:ENST00000684239.1:ENST00000682939.1:ENST00000684570.1:ENST00000682057.1:ENST00000682878.1:ENST00000683880.1:ENST00000684422.1:ENST00000682504.1:ENST00000683726.1:ENST00000684680.1:ENST00000683196.1:ENST00000683458.1:ENST00000683803.1:ENST00000684281.1:ENST00000682991.1:ENST00000683754.1:ENST00000683481.1:ENST00000682455.1:ENST00000682034.1:ENST00000684451.1:ENST00000683583.1:ENST00000682776.1:ENST00000683873.1:ENST00000683878.1:ENST00000683195.1:ENST00000682995.1:ENST00000682374.1:ENST00000683698.1:ENST00000682454.1:ENST00000682694.1:ENST00000682412.1:ENST00000514801.2:ENST00000682926.1:ENST00000682682.1:ENST00000418862.2:ENST00000346348.7:ENST00000314673.8:ENST00000682633.1:ENST00000683085.1:ENST00000682688.1:ENST00000684319.1:ENST00000683577.1:ENST00000682709.1:ENST00000684299.1:ENST00000682133.1:ENST00000682594.1:ENST00000683473.1:ENST00000682106.1:ENST00000683364.1:ENST00000683436.1:ENST00000684220.1:ENST00000683909.1:ENST00000684118.1:ENST00000681981.1:ENST00000682738.1:ENST00000509338.6:ENST00000684717.1:ENST00000682660.1:ENST00000683073.1:ENST00000515216.6:ENST00000684581.1:ENST00000683763.1:ENST00000683479.1:ENST00000682464.1:ENST00000684108.1:ENST00000682514.1:ENST00000684017.1:ENST00000684273.1:ENST00000513865.5:ENST00000505648.5:ENST00000508980.5:ENST00000369627.6:ENST00000503491.5:ENST00000508658.6:ENST00000683097.1:ENST00000683541.1:ENST00000683759.1:ENST00000369635.7:ENST00000503608.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	50	2	2.71269	2.828895	2.9451	0.0181461	0.011051	0.114853	0.0873897
chr1	27545665	27545764	406882	0	-	0.414141	(0.408,0.44]	chr1	48993	104	INTRON	INTRON	AHDC1	ENSG00000126705.15	ENST00000247087.10:ENST00000673934.1:ENST00000644989.1:ENST00000374011.6:ENST00000642416.1:ENST00000642245.1	protein_coding	protein_coding	protein_coding	protein_coding	3	57	2	2.60048	2.8287649999999998	3.05705	0.00658331	0.00484324	0.0701901	0.0640618
chr1	171520786	171520884	253573	0	+	0.397959	(0.378,0.408]	chr1	30123	26	INTRON	INTRON	PRRC2C	ENSG00000117523.18	ENST00000647382.2:ENST00000367742.7:ENST00000476522.5:ENST00000338920.8:ENST00000426496.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	98	2	2.55607	2.828745	3.10142	0.00704647	1.15321e-4	0.0718189	0.0092036
chr10	69393387	69393483	4446642	0	+	0.53125	(0.515,0.57]	chr10	410309	7	INTRON	INTRON	HK1	ENSG00000156515.24	ENST00000436817.6:ENST00000360289.6:ENST00000448642.6:ENST00000643399.2:ENST00000298649.8:ENST00000359426.7:ENST00000493591.6:ENST00000470050.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	61	2	1.88259	2.828745	3.7749	0.0251849	2.59829e-4	0.133519	0.0148796
chr15	52044630	52044730	6029277	0	+	0.37	(0.35,0.378]	chr15	574433	14	INTRON	INTRON	MAPK6	ENSG00000069956.14	ENST00000560802.1:ENST00000691380.1:ENST00000558063.5:ENST00000560254.1:ENST00000681888.1:ENST00000261845.7:ENST00000680066.1:ENST00000680777.1:ENST00000558100.1:ENST00000680652.1:ENST00000558841.1:ENST00000558891.1:ENST00000560774.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	46	2	2.66547	2.8286	2.99173	0.0233639	0.00713365	0.118323	0.0756118
chr1	15638006	15638106	33691	0	+	0.4	(0.378,0.408]	chr1	4100	3	SS3_PROX	SS3_PROX:INTRON	DDI2	ENSG00000197312.12	ENST00000480945.6:ENST00000320153.10:ENST00000483899.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	59	2	2.46345	2.828565	3.19368	0.00827342	0.00426861	0.0813266	0.0573912
chr1	114396159	114396259	526725	0	-	0.34	(0.32,0.35]	chr1	62043	35	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TRIM33	ENSG00000197323.12	ENST00000358465.7:ENST00000492227.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	91	2	2.27097	2.828545	3.38612	0.00347642	0.00249604	0.0540643	0.0446195
chr12	71662484	71662584	5363581	0	-	0.39	(0.378,0.408]	chr12	512046	1	SS5_PROX	SS5_PROX:INTRON	ZFC3H1	ENSG00000133858.17	ENST00000378743.9:ENST00000552994.5:ENST00000550712.1:ENST00000552037.1:ENST00000548100.1:ENST00000549407.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	44	2	2.60296	2.828445	3.05393	0.0267851	0.00551532	0.123349	0.0672816
chr3	88060104	88060204	1457035	0	+	0.34	(0.32,0.35]	chr3	153164	2	INTRON	INTRON	ZNF654	ENSG00000175105.8	ENST00000636215.2:ENST00000473136.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	49	2	2.6321	2.8284000000000002	3.0247	0.0268	0.00671684	0.123349	0.0738715
chr5	104281576	104281676	2443231	0	+	0.34	(0.32,0.35]	chr5	234410	1763	INTRON	INTRON	LINC02163	ENSG00000251026.2	ENST00000662211.1:ENST00000666145.1	lncRNA	lncRNA	lncRNA	lncRNA	2	49	2	2.6321	2.8284000000000002	3.0247	0.0268	0.00671684	0.123349	0.0738715
chr9	94264124	94264224	4161468	0	+	0.45	(0.44,0.476]	chr9	379439	44	INTRON	INTRON	ZNF169	ENSG00000175787.17	ENST00000395395.7:ENST00000492115.2:ENST00000340911.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	57	2	2.39003	2.82836	3.26669	0.0106488	0.00305435	0.0915714	0.0493883
chr17	39255760	39255860	6765178	0	-	0.49	(0.476,0.515]	chr17	665413	32	UTR3	UTR3:EXON_MRNA	FBXL20	ENSG00000108306.13	ENST00000264658.11	protein_coding	protein_coding	protein_coding	protein_coding	4	70	2	1.91525	2.8283449999999997	3.74144	0.0232571	4.08784e-4	0.127416	0.0185763
chr1	39748271	39748370	79443	0	+	0.323232	(0.32,0.35]	chr1	10283	29	UTR3	UTR3:EXON_MRNA:INTRON	PPIE	ENSG00000084072.17	ENST00000324379.10:ENST00000356511.6:ENST00000495526.5:ENST00000482751.5:ENST00000372830.5:ENST00000372835.9:ENST00000470213.5:ENST00000497370.5:ENST00000474804.5:ENST00000475350.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	49	2	2.68921	2.828335	2.96746	0.0230336	0.00815799	0.118056	0.0810802
chr10	63268262	63268362	4633411	0	-	0.4	(0.378,0.408]	chr10	426222	2	SS5_PROX	SS5_PROX:INTRON	JMJD1C	ENSG00000171988.20	ENST00000399262.7:ENST00000402544.5:ENST00000542921.5:ENST00000469152.5:ENST00000489372.4:ENST00000633035.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	44	2	2.72993	2.82829	2.92665	0.0188736	0.0086017	0.108861	0.083729
chr4	2577110	2577210	1912921	0	+	0.38	(0.378,0.408]	chr4	191976	396	INTRON	INTRON	RNF4:FAM193A	ENSG00000063978.16:ENSG00000125386.16	ENST00000508235.1:ENST00000637812.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	44	2	2.72993	2.82829	2.92665	0.0188736	0.0086017	0.108861	0.083729
chr7	134988580	134988664	3426697	0	+	0.25	[0,0.28]	chr7	319510	2	INTRON	INTRON	AGBL3	ENSG00000146856.14	ENST00000436302.6:ENST00000435976.6:ENST00000275763.10:ENST00000455283.2:ENST00000476700.5:ENST00000494702.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	64	2	2.5055	2.82826	3.15102	0.0359431	0.00767596	0.152322	0.0753665
chr1	246897312	246897411	681605	0	-	0.252525	[0,0.28]	chr1	79981	10	INTRON	INTRON	AHCTF1	ENSG00000153207.16	ENST00000648844.2:ENST00000326225.3:ENST00000366508.5:ENST00000470300.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	162	2	2.5043	2.8282249999999998	3.15215	0.00511937	1.8235e-4	0.0628102	0.0117575
chr4	70968530	70968630	1971170	0	+	0.51	(0.476,0.515]	chr4	197590	91	INTRON	INTRON	MOB1B	ENSG00000173542.9	ENST00000502869.5:ENST00000509041.5:ENST00000309395.7:ENST00000396051.2:ENST00000511449.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	87	2	2.16055	2.8282100000000003	3.49587	0.00292015	0.00120011	0.0494641	0.0315806
chr12	121889886	121889985	5238189	0	+	0.424242	(0.408,0.44]	chr12	497272	5	INTRON	INTRON	PSMD9	ENSG00000110801.14	ENST00000537407.5:ENST00000540962.5:ENST00000261817.6:ENST00000538613.5:ENST00000542602.1:ENST00000541212.6:ENST00000543699.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	69	2	2.13157	2.82814	3.52471	0.0109031	0.00112428	0.0923273	0.0306963
chr5	146148661	146148760	2747057	0	-	0.414141	(0.408,0.44]	chr5	258826	41	EXON_MRNA	EXON_MRNA:INTRON	LARS1	ENSG00000133706.19	ENST00000674174.1:ENST00000674170.1:ENST00000674479.1:ENST00000674309.1:ENST00000674218.1:ENST00000674467.1:ENST00000674290.1:ENST00000674447.1:ENST00000674270.1:ENST00000674383.1:ENST00000674191.1:ENST00000674158.1:ENST00000394434.7:ENST00000674398.1:ENST00000674277.1:ENST00000274562.13:ENST00000510191.5:ENST00000674310.1:ENST00000512412.2:ENST00000508667.5:ENST00000507095.1:ENST00000674417.1:ENST00000674450.1:ENST00000674412.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	190	2	2.78931	2.828115	2.86692	2.28235e-4	2.91707e-5	0.0138641	0.00428623
chr17	51283158	51283257	6627806	0	+	0.535354	(0.515,0.57]	chr17	647383	23	INTRON	INTRON	UTP18	ENSG00000011260.14	ENST00000225298.12:ENST00000508506.3:ENST00000583725.5:ENST00000583205.5:ENST00000579261.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	59	2	2.45375	2.828075	3.2024	0.00322022	0.00273605	0.0507087	0.0483437
chr5	54009710	54009810	2617901	0	-	0.44	(0.408,0.44]	chr5	248835	977	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	80	2	1.97721	2.828035	3.67886	0.0121661	3.86173e-4	0.0910127	0.017761
chr9	5007885	5007985	4096049	0	+	0.54	(0.515,0.57]	chr9	373235	215	INTRON	INTRON	JAK2	ENSG00000096968.14	ENST00000636127.1:ENST00000476574.5:ENST00000381652.4	protein_coding	protein_coding	protein_coding	protein_coding	4	61	2	2.40178	2.82795	3.25412	0.00382306	0.00224554	0.0542786	0.0435144
chr1	167967708	167967806	248800	0	+	0.418367	(0.408,0.44]	chr1	29548	6	INTRON	INTRON	DCAF6	ENSG00000143164.16	ENST00000450548.5:ENST00000470919.5:ENST00000432587.6:ENST00000367843.7:ENST00000470721.5:ENST00000367840.4:ENST00000312263.10:ENST00000455334.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	15	265	2	2.3876	2.8279199999999998	3.26824	4.04529e-4	9.60436e-7	0.0185763	5.54959e-4
chr4	55415172	55415270	1960786	0	+	0.397959	(0.378,0.408]	chr4	196561	26	INTRON	INTRON	TMEM165	ENSG00000134851.13	ENST00000381334.10:ENST00000506198.5:ENST00000508404.5:ENST00000511710.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	10	183	2	2.72091	2.827885	2.93486	5.24084e-4	2.1061e-5	0.0210958	0.00355038
chr18	26063433	26063533	6959451	0	-	0.55	(0.515,0.57]	chr18	688450	53	INTRON	INTRON	SS18	ENSG00000141380.14	ENST00000415083.7:ENST00000542420.6:ENST00000579640.5:ENST00000269138.9:ENST00000269137.11:ENST00000585121.5:ENST00000539244.6:ENST00000585241.5:ENST00000578954.5:ENST00000579061.5:ENST00000577636.5:ENST00000584083.5:ENST00000578700.5:ENST00000582792.5:ENST00000581021.5:ENST00000577572.5:ENST00000582448.5:ENST00000581570.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	59	2	2.11724	2.82784	3.53844	0.0110335	7.92613e-4	0.0927187	0.0259663
chr2	32178693	32178793	729908	0	+	0.4	(0.378,0.408]	chr2	84166	7	INTRON	INTRON	SLC30A6	ENSG00000152683.14	ENST00000357055.7:ENST00000435660.5:ENST00000282587.9:ENST00000449777.5:ENST00000454324.5:ENST00000379343.6:ENST00000440718.5:ENST00000406369.2:ENST00000457724.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	47	2	2.13703	2.827815	3.5186	0.0797592	8.45009e-4	0.19979	0.0263813
chr3	33804520	33804619	1394438	0	+	0.323232	(0.32,0.35]	chr3	146021	46	INTRON	INTRON	PDCD6IP	ENSG00000170248.15	ENST00000457054.6:ENST00000648706.1:ENST00000435909.5:ENST00000430877.5:ENST00000413073.1:ENST00000307296.8:ENST00000477798.5:ENST00000498147.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	66	2	2.71053	2.827815	2.9451	0.011051	0.00346747	0.0873897	0.0539802
chr1	31283179	31283279	413154	0	-	0.37	(0.35,0.378]	chr1	49797	8	INTRON	INTRON	SNRNP40	ENSG00000060688.13	ENST00000263694.9:ENST00000474025.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	86	2	1.81422	2.82771	3.8412	0.0226581	1.97447e-4	0.117618	0.0122531
chr18	9939255	9939354	6873602	0	+	0.515152	(0.476,0.515]	chr18	680892	18	INTRON	INTRON	VAPA	ENSG00000101558.14	ENST00000400000.7:ENST00000340541.4:ENST00000584796.5:ENST00000583879.5:ENST00000583475.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	18	309	2	2.47528	2.82765	3.18002	1.29354e-4	1.12268e-6	0.0103404	6.08503e-4
chr22	19105359	19105459	7551844	0	-	0.46	(0.44,0.476]	chr22	771903	155	INTRON	INTRON	DGCR2	ENSG00000070413.20	ENST00000537045.5:ENST00000545799.5:ENST00000263196.12:ENST00000389262.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	73	2	1.75627	2.82761	3.89895	0.0380723	2.02261e-4	0.157702	0.0129814
chr8	129544838	129544937	4060731	0	-	0.393939	(0.378,0.408]	chr8	369648	343	INTRON	INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1:ENST00000676273.1:ENST00000667643.1:ENST00000668791.1:ENST00000663716.1:ENST00000663572.1:ENST00000676148.1:ENST00000667962.1:ENST00000674877.1:ENST00000675316.1:ENST00000674656.1:ENST00000446592.7:ENST00000667341.1:ENST00000675186.1:ENST00000652971.1:ENST00000661447.1:ENST00000674863.1:ENST00000675498.1:ENST00000675527.1:ENST00000676108.1:ENST00000657647.1:ENST00000675589.1:ENST00000675913.1:ENST00000675109.1:ENST00000671632.1:ENST00000671311.1:ENST00000676099.1:ENST00000660652.1:ENST00000675522.1:ENST00000675183.1:ENST00000658861.1:ENST00000663991.1:ENST00000675044.1:ENST00000675435.1:ENST00000674639.1:ENST00000676069.1:ENST00000675532.1:ENST00000674762.1:ENST00000523151.6:ENST00000675948.1:ENST00000665364.1:ENST00000657251.1:ENST00000675166.1:ENST00000674883.1:ENST00000675867.1:ENST00000674580.1:ENST00000675393.1:ENST00000520048.1:ENST00000674906.1:ENST00000676030.1:ENST00000670588.1:ENST00000675072.1:ENST00000664936.1:ENST00000652914.1:ENST00000657069.1	lncRNA	lncRNA	lncRNA	lncRNA	8	147	2	2.44367	2.827585	3.2115	7.28566e-4	1.09972e-4	0.0245975	0.00943606
chr16	89801884	89801981	6544670	0	-	0.381443	(0.378,0.408]	chr16	634579	19	INTRON	INTRON	FANCA	ENSG00000187741.16	ENST00000561667.2:ENST00000389301.8:ENST00000568369.6:ENST00000564475.6:ENST00000696275.1:ENST00000696287.1:ENST00000696286.1:ENST00000696274.1:ENST00000696291.1:ENST00000696276.1:ENST00000567205.2:ENST00000567284.7:ENST00000696277.1:ENST00000696292.1:ENST00000563767.2:ENST00000567621.6:ENST00000696288.1:ENST00000696293.1:ENST00000566889.5:ENST00000389302.7:ENST00000696294.1:ENST00000696295.1:ENST00000563673.5:ENST00000543736.5:ENST00000534992.5:ENST00000565582.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	13	204	2	1.80442	2.82753	3.85064	0.00496282	9.11492e-7	0.0615009	5.40577e-4
chr5	146239928	146240028	2514485	0	+	0.45	(0.44,0.476]	chr5	240194	21	INTRON	INTRON	ENSG00000275740:RBM27	ENSG00000275740.1:ENSG00000091009.8	ENST00000506502.2:ENST00000265271.7	protein_coding	protein_coding	protein_coding	protein_coding	5	92	2	2.53696	2.8274850000000002	3.11801	0.00204135	6.56773e-4	0.041855	0.0233791
chr7	127923071	127923170	3405128	0	+	0.494949	(0.476,0.515]	chr7	318161	179	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000465900.5:ENST00000486037.1:ENST00000484767.5:ENST00000492840.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	57	2	2.76855	2.827425	2.8863	0.0111679	0.00244302	0.0877435	0.0456956
chr3	6622137	6622237	1357465	0	+	0.36	(0.35,0.378]	chr3	142522	377	INTRON	INTRON	ENSG00000189229	ENSG00000189229.12	ENST00000433639.1:ENST00000655754.1:ENST00000658468.1:ENST00000669512.1:ENST00000667028.1:ENST00000655541.1:ENST00000668643.1:ENST00000671568.1:ENST00000671036.1:ENST00000669798.1:ENST00000655753.1:ENST00000655856.1:ENST00000658398.1:ENST00000661518.1:ENST00000661279.1:ENST00000655495.1:ENST00000663041.1:ENST00000659827.1:ENST00000667716.1:ENST00000668416.1:ENST00000658133.1:ENST00000342990.4:ENST00000660054.1:ENST00000671370.1	lncRNA	lncRNA	lncRNA	lncRNA	2	48	2	2.57049	2.8274	3.08431	0.0262669	0.0065853	0.133676	0.0701901
chr9	112055432	112055532	4315567	0	-	0.37	(0.35,0.378]	chr9	396900	26	INTRON	INTRON	SUSD1	ENSG00000106868.17	ENST00000374270.8:ENST00000374263.7:ENST00000355396.7:ENST00000374264.6:ENST00000475283.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	48	2	2.57049	2.8274	3.08431	0.0262669	0.0065853	0.133676	0.0701901
chr2	158545073	158545167	898026	0	+	0.351064	(0.35,0.378]	chr2	99355	1	EXON_LNCRNA	EXON_LNCRNA:INTRON	PKP4:ENSG00000289488	ENSG00000144283.23:ENSG00000289488.1	ENST00000389759.8:ENST00000426248.7:ENST00000389757.7:ENST00000457109.5:ENST00000452162.5:ENST00000411900.5:ENST00000421462.5:ENST00000462335.1:ENST00000693491.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:nonsense_mediated_decay:lncRNA:processed_transcript	4	74	2	2.32061	2.82732	3.33403	0.00545884	0.00272701	0.0669938	0.0467523
chr7	22669428	22669528	3500073	0	-	0.36	(0.35,0.378]	chr7	326683	40	INTRON	INTRON	STEAP1B	ENSG00000105889.16	ENST00000650428.1	protein_coding	processed_transcript	protein_coding	processed_transcript	2	46	2	2.72497	2.827245	2.92952	0.0198266	0.00881187	0.109608	0.084878
chr9	113292540	113292638	4189708	0	+	0.357143	(0.35,0.378]	chr9	382047	10	UTR3	UTR3:EXON_MRNA	PRPF4	ENSG00000136875.13	ENST00000374199.9:ENST00000374198.5	protein_coding	protein_coding	protein_coding	protein_coding	2	46	2	2.72497	2.827245	2.92952	0.0198266	0.00881187	0.109608	0.084878
chr8	37859014	37859114	3935532	0	-	0.4	(0.378,0.408]	chr8	360548	5	UTR3	UTR3:EXON_MRNA	RAB11FIP1	ENSG00000156675.16	ENST00000330843.9:ENST00000287263.8	protein_coding	protein_coding	protein_coding	protein_coding	6	110	2	2.78965	2.827145	2.86464	0.00215581	2.29046e-4	0.0417866	0.0133403
chr16	84712010	84712109	6410022	0	+	0.494949	(0.476,0.515]	chr16	615266	28	INTRON	INTRON	USP10	ENSG00000103194.16	ENST00000562743.5:ENST00000540269.6:ENST00000563892.5:ENST00000562092.1:ENST00000569511.5:ENST00000219473.12:ENST00000570191.5:ENST00000563048.5:ENST00000562283.5:ENST00000563386.5:ENST00000569038.5:ENST00000570053.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	57	2	2.32001	2.827085	3.33416	0.0136217	0.00230489	0.101682	0.0428247
chr17	6926060	6926160	6717464	0	-	0.48	(0.476,0.515]	chr17	658645	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ALOX12-AS1	ENSG00000215067.11	ENST00000653385.1:ENST00000659418.1:ENST00000572385.5:ENST00000570562.5:ENST00000575889.5	lncRNA	lncRNA	lncRNA	lncRNA	3	57	2	2.32001	2.827085	3.33416	0.0136217	0.00230489	0.101682	0.0428247
chr19	210166	210266	7108790	0	-	0.51	(0.476,0.515]	chr19	713686	3	SS3_PROX	SS3_PROX:INTRON	LINC01002	ENSG00000282508.2	ENST00000631772.1:ENST00000633151.1:ENST00000631644.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	3	57	2	2.32001	2.827085	3.33416	0.0136217	0.00230489	0.101682	0.0428247
chr16	89289837	89289933	6541558	0	-	0.520833	(0.515,0.57]	chr16	634152	8	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000644285.1:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000645212.1:ENST00000646345.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	69	2	1.7407	2.827065	3.91343	0.0242347	1.28574e-4	0.130613	0.0103138
chr11	68615052	68615146	4818916	0	+	0.468085	(0.44,0.476]	chr11	449080	5	UTR3	UTR3:EXON_MRNA	PPP6R3	ENSG00000110075.15	ENST00000393800.7:ENST00000265637.8:ENST00000393801.7:ENST00000265636.9:ENST00000529710.5:ENST00000527403.6	protein_coding	protein_coding	protein_coding	protein_coding	4	68	2	2.22103	2.82704	3.43305	0.00776319	0.00159668	0.0787356	0.0364566
chr14	101889283	101889382	5819793	0	+	0.575758	(0.57,1]	chr14	551895	54	INTRON	INTRON	PPP2R5C	ENSG00000078304.20	ENST00000694906.1:ENST00000422945.6:ENST00000328724.9:ENST00000350249.7:ENST00000557621.5:ENST00000334743.9:ENST00000445439.7:ENST00000557095.5:ENST00000554137.5:ENST00000556218.5:ENST00000557534.1:ENST00000557716.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	32	2	2.73499	2.82694	2.91889	0.00719009	0.00237434	0.0756118	0.0438057
chr2	10044651	10044751	690579	0	+	0.58	(0.57,1]	chr2	81018	2	SS5_PROX	SS5_PROX:INTRON	KLF11	ENSG00000172059.11	ENST00000401510.5:ENST00000305883.6:ENST00000540845.5:ENST00000448523.5:ENST00000440320.5:ENST00000535335.1	protein_coding	protein_coding	protein_coding	protein_coding	3	32	2	2.73499	2.82694	2.91889	0.00719009	0.00237434	0.0756118	0.0438057
chr7	75484656	75484756	3558918	0	-	0.32	(0.28,0.32]	chr7	331560	4	SS3_PROX	SS3_PROX:INTRON	POM121C:ENSG00000242073	ENSG00000272391.6:ENSG00000242073.2	ENST00000615331.5:ENST00000415277.2	protein_coding	protein_coding	protein_coding:transcribed_unprocessed_pseudogene	protein_coding:transcribed_unprocessed_pseudogene	12	258	2	2.42351	2.8269	3.23029	3.20052e-4	7.21633e-5	0.0159645	0.00764953
chr19	19521227	19521327	7036453	0	+	0.36	(0.35,0.378]	chr19	701528	45	INTRON	INTRON	NDUFA13	ENSG00000186010.19	ENST00000502506.6:ENST00000507754.9:ENST00000503283.5:ENST00000428459.6:ENST00000511584.2:ENST00000511180.4:ENST00000606722.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	74	2	2.35838	2.82684	3.2953	0.00468156	0.0031465	0.0631419	0.0500431
chr17	50726663	50726763	6627039	0	+	0.28	[0,0.28]	chr17	647183	23	INTRON	INTRON	LUC7L3	ENSG00000108848.16	ENST00000625349.2:ENST00000508045.5:ENST00000508218.5:ENST00000509335.5:ENST00000506686.5:ENST00000393227.6:ENST00000504563.6:ENST00000505658.6:ENST00000240304.5:ENST00000508482.5:ENST00000505619.5:ENST00000510984.5:ENST00000507200.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	137	2	1.96007	2.82683	3.69359	0.00678267	0.00122246	0.0743228	0.0320622
chr7	123699342	123699442	3632161	0	-	0.42	(0.408,0.44]	chr7	337559	22	INTRON	INTRON	WASL	ENSG00000106299.8	ENST00000223023.5	protein_coding	protein_coding	protein_coding	protein_coding	6	105	2	2.53189	2.8268000000000004	3.12171	8.78846e-4	6.63666e-4	0.0269932	0.0234815
chr17	27104511	27104611	6579870	0	+	0.48	(0.476,0.515]	chr17	639586	77	INTRON	INTRON	ENSG00000285822	ENSG00000285822.1	ENST00000649401.1	lncRNA	lncRNA	lncRNA	lncRNA	8	139	2	2.73904	2.826795	2.91455	4.32026e-4	1.35726e-4	0.0190829	0.0100405
chr12	108540581	108540680	5405548	0	-	0.292929	(0.28,0.32]	chr12	515889	11	INTRON	INTRON	SART3	ENSG00000075856.12	ENST00000546815.6:ENST00000651280.1:ENST00000228284.8:ENST00000546728.5:ENST00000431469.6:ENST00000547528.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	86	2	2.38504	2.82677	3.2685	0.00475871	0.00432734	0.0636201	0.0579331
chr1	21753519	21753619	396568	0	-	0.54	(0.515,0.57]	chr1	47331	4	SS3_PROX	SS3_PROX:INTRON	USP48	ENSG00000090686.16	ENST00000400301.5:ENST00000308271.14:ENST00000529637.5:ENST00000421625.6:ENST00000527823.5:ENST00000532737.1	protein_coding	protein_coding	protein_coding	protein_coding	14	181	2	2.48785	2.826685	3.16552	8.25408e-5	3.65383e-5	0.00812487	0.00484751
chr4	126663675	126663775	2237346	0	-	0.43	(0.408,0.44]	chr4	219023	1982	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	14	244	2	2.81794	2.8266150000000003	2.83529	7.3373e-5	1.49359e-5	0.00767614	0.00290818
chr19	47196035	47196134	7084537	0	+	0.525253	(0.515,0.57]	chr19	708804	154	INTRON	INTRON	SAE1	ENSG00000142230.13	ENST00000413379.7:ENST00000270225.12:ENST00000598840.5:ENST00000414294.6:ENST00000660039.1:ENST00000664120.1:ENST00000596995.1:ENST00000392776.3:ENST00000659110.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	38	2	2.56306	2.82654	3.09002	0.0247751	0.00491099	0.131869	0.0609494
chr1	1877367	1877467	362704	0	-	0.29	(0.28,0.32]	chr1	42311	373	INTRON	INTRON	GNB1	ENSG00000078369.18	ENST00000610897.4:ENST00000615252.4:ENST00000378609.9:ENST00000439272.6:ENST00000434686.6:ENST00000472614.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	53	2	2.67975	2.8265399999999996	2.97333	0.0252505	0.00857834	0.12011	0.083729
chr1	153918938	153919038	557727	0	-	0.29	(0.28,0.32]	chr1	66001	38	INTRON	INTRON	GATAD2B	ENSG00000143614.10	ENST00000368655.5:ENST00000634544.1:ENST00000634408.1:ENST00000634401.1:ENST00000634791.1:ENST00000637331.1:ENST00000636008.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	53	2	2.67975	2.8265399999999996	2.97333	0.0252505	0.00857834	0.12011	0.083729
chr1	175981568	175981668	589437	0	-	0.31	(0.28,0.32]	chr1	70872	132	INTRON	INTRON	COP1	ENSG00000143207.21	ENST00000367669.8:ENST00000367667.5:ENST00000461830.6:ENST00000367666.5:ENST00000649803.1:ENST00000308769.12	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	53	2	2.67975	2.8265399999999996	2.97333	0.0252505	0.00857834	0.12011	0.083729
chr2	112519481	112519581	851358	0	+	0.3	(0.28,0.32]	chr2	95401	159	INTRON	INTRON	TTL	ENSG00000114999.8	ENST00000233336.7:ENST00000476615.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	53	2	2.67975	2.8265399999999996	2.97333	0.0252505	0.00857834	0.12011	0.083729
chr15	90195761	90195861	6098043	0	+	0.52	(0.515,0.57]	chr15	580416	23	INTRON	INTRON	SEMA4B	ENSG00000185033.15	ENST00000559322.5:ENST00000559300.5:ENST00000561085.1:ENST00000332496.10:ENST00000558895.5:ENST00000559792.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	66	2	2.73258	2.826515	2.92045	0.00260192	0.00128922	0.0470772	0.0328334
chr1	241639249	241639315	666525	0	-	0.409091	(0.408,0.44]	chr1	79097	1	INTRON	INTRON	OPN3:CHML	ENSG00000054277.14:ENSG00000203668.3	ENST00000366554.3:ENST00000490673.5:ENST00000469376.5:ENST00000463155.5:ENST00000478849.1:ENST00000366553.3:ENST00000638018.1:ENST00000638160.1:ENST00000638121.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	72	2	2.39349	2.826485	3.25948	0.00467273	0.00246454	0.0600108	0.0459102
chr5	32162158	32162258	2597394	0	-	0.45	(0.44,0.476]	chr5	246744	179	INTRON	INTRON	GOLPH3	ENSG00000113384.14	ENST00000265070.7:ENST00000503610.5:ENST00000512668.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	76	2	2.63508	2.82645	3.01782	0.00501007	7.8136e-4	0.0618077	0.0257169
chr11	46843522	46843622	4948739	0	-	0.5	(0.476,0.515]	chr11	463857	168	INTRON	INTRON	CKAP5	ENSG00000175216.15	ENST00000529230.6:ENST00000312055.9:ENST00000525248.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	91	2	2.81214	2.82641	2.84068	0.00217133	5.41922e-4	0.0417893	0.0211086
chr9	83970057	83970151	4274226	0	-	0.308511	(0.28,0.32]	chr9	393118	7	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	HNRNPK	ENSG00000165119.21	ENST00000376281.8:ENST00000376263.8:ENST00000351839.7:ENST00000360384.9:ENST00000493362.1:ENST00000492865.1:ENST00000481820.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	74	2	2.67975	2.82637	2.97299	0.0252505	0.00126436	0.12011	0.0329641
chr21	46269513	46269609	7471261	0	-	0.489583	(0.476,0.515]	chr21	761661	16	INTRON	INTRON	MCM3AP	ENSG00000160294.11	ENST00000397708.1:ENST00000291688.6	protein_coding	protein_coding	protein_coding	protein_coding	5	91	2	2.59304	2.82631	3.05958	0.00158794	8.34691e-4	0.0367961	0.0266389
chr17	29406502	29406602	6585797	0	+	0.4	(0.378,0.408]	chr17	640377	25	INTRON	INTRON	TAOK1	ENSG00000160551.12	ENST00000261716.8:ENST00000583121.5:ENST00000587277.1:ENST00000536202.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	90	2	2.10836	2.8262099999999997	3.54406	0.00375851	0.00110718	0.0562562	0.0306086
chr7	44416463	44416562	3527545	0	-	0.333333	(0.32,0.35]	chr7	328965	28	INTRON	INTRON	NUDCD3	ENSG00000015676.18	ENST00000355451.8:ENST00000460110.5:ENST00000493613.5:ENST00000472246.5:ENST00000464812.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	49	2	2.57263	2.8261900000000004	3.07975	0.0312297	0.00554235	0.13151	0.0674105
chr10	11884457	11884556	4556427	0	-	0.525253	(0.515,0.57]	chr10	420498	98	INTRON	INTRON	PROSER2-AS1	ENSG00000225778.5	ENST00000445498.5	lncRNA	lncRNA	lncRNA	lncRNA	10	188	2	2.20043	2.82616	3.45189	0.00392045	5.79986e-7	0.0570863	4.48558e-4
chr9	130745054	130745154	4214175	0	+	0.48	(0.476,0.515]	chr9	386427	302	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000393293.4	protein_coding	protein_coding	protein_coding	protein_coding	32	547	2	2.74626	2.8260899999999998	2.90592	6.4579600000000004e-06	1.01645e-6	0.00192696	5.76724e-4
chr19	21308945	21309045	7158433	0	-	0.35	(0.32,0.35]	chr19	723659	3	SS5_PROX	SS5_PROX:INTRON	ZNF708	ENSG00000182141.10	ENST00000356929.3:ENST00000598046.5:ENST00000601295.1:ENST00000602023.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	49	2	2.74415	2.826005	2.90786	0.0198267	0.00993008	0.109608	0.0877296
chr11	63628824	63628923	4962388	0	-	0.292929	(0.28,0.32]	chr11	467121	49	UTR3	UTR3:EXON_MRNA	ATL3	ENSG00000184743.13	ENST00000398868.8	protein_coding	protein_coding	protein_coding	protein_coding	8	183	2	2.57771	2.825945	3.07418	9.05485e-4	1.98698e-4	0.0278396	0.0122787
chr19	47171414	47171513	7084289	0	+	0.515152	(0.476,0.515]	chr19	708798	11	INTRON	INTRON	SAE1	ENSG00000142230.13	ENST00000413379.7:ENST00000270225.12:ENST00000598840.5:ENST00000414294.6:ENST00000660039.1:ENST00000664120.1:ENST00000596995.1:ENST00000392776.3:ENST00000659110.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	76	2	2.54157	2.8258900000000002	3.11021	0.00697457	5.02606e-4	0.0718189	0.020217099999999998
chr1	163341310	163341406	239733	0	+	0.53125	(0.515,0.57]	chr1	28896	5	INTRON	INTRON	NUF2	ENSG00000143228.13	ENST00000524800.5:ENST00000367900.7:ENST00000271452.8:ENST00000497990.1:ENST00000527439.5:ENST00000527120.1:ENST00000531529.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	37	2	2.52504	2.825835	3.12663	0.029342	0.00374498	0.128055	0.0562234
chr10	131931661	131931761	4537173	0	+	0.53	(0.515,0.57]	chr10	418866	187	INTRON	INTRON	PPP2R2D	ENSG00000175470.20	ENST00000455566.6:ENST00000616467.4:ENST00000482010.6:ENST00000470416.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	37	2	2.52504	2.825835	3.12663	0.029342	0.00374498	0.128055	0.0562234
chr12	79922104	79922204	5376405	0	-	0.53	(0.515,0.57]	chr12	512797	83	INTRON	INTRON	PPP1R12A	ENSG00000058272.19	ENST00000261207.9:ENST00000450142.7:ENST00000437004.6:ENST00000550107.5:ENST00000547330.5:ENST00000550510.5	protein_coding	protein_coding	protein_coding	protein_coding	2	37	2	2.52504	2.825835	3.12663	0.029342	0.00374498	0.128055	0.0562234
chr17	63803759	63803857	6661265	0	+	0.540816	(0.515,0.57]	chr17	649980	28	INTRON	INTRON	DDX42	ENSG00000198231.14	ENST00000578681.5:ENST00000583590.5:ENST00000389924.7:ENST00000359353.9:ENST00000578137.5:ENST00000584261.5:ENST00000577940.6:ENST00000579511.1:ENST00000577978.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	37	2	2.52504	2.825835	3.12663	0.029342	0.00374498	0.128055	0.0562234
chr17	80826922	80827022	6687619	0	+	0.58	(0.57,1]	chr17	653460	33	INTRON	INTRON	RPTOR	ENSG00000141564.15	ENST00000574767.5:ENST00000577161.5:ENST00000306801.8:ENST00000544334.6:ENST00000575542.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	31	2	2.38391	2.825755	3.2676	0.0104374	0.00176203	0.0902296	0.0376652
chr16	85573246	85573346	6415564	0	+	0.54	(0.515,0.57]	chr16	615470	165	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	13	116	2	1.04377	2.82571	4.60765	0.0613382	2.17887e-6	0.193423	0.00102673
chr16	15963679	15963779	6307899	0	+	0.61	(0.57,1]	chr16	603510	135	INTRON	INTRON	ABCC1	ENSG00000103222.20	ENST00000574224.2:ENST00000678422.1:ENST00000677164.1:ENST00000399408.7:ENST00000572882.3:ENST00000399410.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	37	2	2.09207	2.825635	3.5592	0.0121228	4.21089e-4	0.090965	0.0183576
chr3	180608428	180608519	1568054	0	+	0.450549	(0.44,0.476]	chr3	162330	8	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TTC14	ENSG00000163728.11	ENST00000296015.9:ENST00000412756.6:ENST00000465065.5:ENST00000382584.8:ENST00000470669.5:ENST00000465625.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	10	165	2	2.61543	2.825625	3.03582	2.42052e-4	9.00312e-5	0.0143235	0.00795396
chr19	19325395	19325494	7034782	0	+	0.50505	(0.476,0.515]	chr19	701329	31	INTRON	INTRON	MAU2	ENSG00000129933.21	ENST00000262815.13:ENST00000609122.5:ENST00000586189.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	43	2	2.65268	2.8256	2.99852	0.0201975	0.0077575	0.121243	0.0757402
chr19	2224436	2224526	6996813	0	+	0.411111	(0.408,0.44]	chr19	693563	6	INTRON	INTRON	DOT1L	ENSG00000104885.19	ENST00000398665.8:ENST00000686010.1:ENST00000457590.2	protein_coding	protein_coding	protein_coding	protein_coding	6	111	2	2.51198	2.825545	3.13911	0.00288187	8.84265e-5	0.0475859	0.00791674
chr12	121313297	121313397	5436773	0	-	0.36	(0.35,0.378]	chr12	519847	29	INTRON	INTRON	ANAPC5	ENSG00000089053.13	ENST00000261819.8:ENST00000535641.5:ENST00000541887.5:ENST00000534976.5:ENST00000441917.6:ENST00000539079.5:ENST00000544314.5:ENST00000535482.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	114	2	2.50237	2.825535	3.1487	0.00111137	6.87038e-4	0.0305384	0.024008
chr1	213053808	213053908	310725	0	+	0.44	(0.408,0.44]	chr1	35901	19	INTRON	INTRON	RPS6KC1	ENSG00000136643.12	ENST00000615329.4:ENST00000543354.5:ENST00000614059.4:ENST00000543470.5:ENST00000366960.8:ENST00000366959.4	protein_coding	protein_coding	protein_coding	protein_coding	6	90	2	2.36243	2.825475	3.28852	0.00287185	0.00107664	0.0474836	0.0300133
chr2	61425425	61425525	1130100	0	-	0.53	(0.515,0.57]	chr2	121499	42	INTRON	INTRON	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000453133.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	37	2	2.74772	2.825415	2.90311	0.0142192	0.0094233	0.103638	0.0817766
chr22	21678206	21678306	7482574	0	+	0.46	(0.44,0.476]	chr22	763345	27	INTRON	INTRON	PPIL2	ENSG00000100023.20	ENST00000679795.1:ENST00000679540.1:ENST00000679580.1:ENST00000681286.1:ENST00000680061.1:ENST00000681338.1:ENST00000681956.1:ENST00000679827.1:ENST00000679534.1:ENST00000679479.1:ENST00000680393.1:ENST00000680463.1:ENST00000680426.1:ENST00000335025.12:ENST00000498109.2:ENST00000496819.2:ENST00000398831.8:ENST00000681394.1:ENST00000679477.1:ENST00000626352.2:ENST00000417788.5:ENST00000458567.5:ENST00000681791.1:ENST00000679692.1:ENST00000680962.1:ENST00000679857.1:ENST00000679586.1:ENST00000680094.1:ENST00000484439.5:ENST00000680434.1:ENST00000680109.1:ENST00000406385.1:ENST00000680022.1:ENST00000681137.1:ENST00000680860.1:ENST00000680183.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	70	2	2.28847	2.8253899999999996	3.36231	0.00692113	0.00161678	0.0718189	0.0369204
chr8	47949922	47950022	3945657	0	-	0.42	(0.408,0.44]	chr8	361951	55	INTRON	INTRON	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7	protein_coding	protein_coding	protein_coding	protein_coding	2	30	2	1.81572	2.82533	3.83494	0.0626779	0.0411442	0.175915	0.161534
chr6	53289402	53289498	3107587	0	-	0.53125	(0.515,0.57]	chr6	291020	11	INTRON	INTRON	ELOVL5	ENSG00000012660.14	ENST00000370918.8:ENST00000542638.5:ENST00000304434.11:ENST00000485336.5:ENST00000465983.5:ENST00000486973.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	67	2	2.20043	2.825285	3.45014	0.00392045	0.00116948	0.0570863	0.0312127
chr1	89824668	89824767	159559	0	+	0.414141	(0.408,0.44]	chr1	17270	21	INTRON	INTRON	LRRC8D	ENSG00000171492.14	ENST00000525774.5:ENST00000337338.9:ENST00000394593.7	protein_coding	protein_coding	protein_coding	protein_coding	6	105	2	2.47605	2.82524	3.17443	0.00116417	5.19132e-4	0.0314524	0.0209322
chr11	10806626	10806722	4915276	0	-	0.375	(0.35,0.378]	chr11	460589	7	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	EIF4G2	ENSG00000110321.19	ENST00000526148.6:ENST00000525681.6:ENST00000339995.11:ENST00000532383.5:ENST00000396525.7:ENST00000531416.6:ENST00000531647.6:ENST00000532082.6:ENST00000524932.6:ENST00000527419.6:ENST00000531507.5:ENST00000525972.5:ENST00000528562.6:ENST00000532570.6:ENST00000530211.6:ENST00000527526.6:ENST00000530702.2:ENST00000525995.1:ENST00000533485.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	102	2	2.43108	2.8252300000000004	3.21938	0.00345501	4.98221e-4	0.0539802	0.0206993
chr2	96889742	96889841	1182122	0	-	0.353535	(0.35,0.378]	chr2	126720	109	INTRON	INTRON	FAM178B	ENSG00000168754.15	ENST00000393526.6:ENST00000490605.3:ENST00000470789.5:ENST00000494172.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	9	118	2	1.63002	2.82523	4.02044	0.012123	1.4631e-4	0.0963277	0.011065
chr16	88749183	88749283	6539861	0	-	0.51	(0.476,0.515]	chr16	633993	4	SS5_PROX	SS5_PROX:INTRON	PIEZO1	ENSG00000103335.22	ENST00000301015.14	protein_coding	protein_coding	protein_coding	protein_coding	4	68	2	2.11679	2.825205	3.53362	0.0115627	0.00102391	0.0962115	0.029231300000000002
chr12	120870414	120870514	5435568	0	-	0.36	(0.35,0.378]	chr12	519663	349	INTRON	INTRON	SPPL3	ENSG00000157837.16	ENST00000353487.7:ENST00000536996.5:ENST00000543608.5:ENST00000543854.5	protein_coding	protein_coding	protein_coding	protein_coding	4	83	2	2.59656	2.8251150000000003	3.05367	0.00638551	7.17897e-4	0.0693551	0.0244389
chr9	131428890	131428990	4217318	0	+	0.46	(0.44,0.476]	chr9	386720	343	INTRON	INTRON	PRRC2B	ENSG00000288701.1	ENST00000682525.1:ENST00000684596.1:ENST00000683519.1:ENST00000682501.1	protein_coding	protein_coding	protein_coding	protein_coding	4	76	2	2.59632	2.825025	3.05373	0.00579248	6.56725e-4	0.0662959	0.0232396
chr12	93801347	93801447	5191142	0	+	0.36	(0.35,0.378]	chr12	490927	102	INTRON	INTRON	CRADD	ENSG00000169372.13	ENST00000332896.8:ENST00000549615.5:ENST00000551065.5:ENST00000548483.5:ENST00000542893.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	63	2	2.48623	2.82497	3.16371	0.00938784	0.00383956	0.0817766	0.0562562
chr6	147951160	147951258	2993512	0	+	0.459184	(0.44,0.476]	chr6	280183	33	INTRON	INTRON	ENSG00000227681	ENSG00000227681.5	ENST00000427015.1	lncRNA	lncRNA	lncRNA	lncRNA	6	88	2	1.81921	2.824955	3.8307	0.0142184	1.81621e-4	0.0960818	0.0117212
chr1	55152175	55152275	465254	0	-	0.34	(0.32,0.35]	chr1	56211	2	SS3_PROX	SS3_PROX:INTRON	USP24	ENSG00000162402.14	ENST00000294383.7:ENST00000634589.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	91	2	1.95408	2.82495	3.69582	0.0124054	7.3931e-4	0.0973643	0.0249744
chr17	78796441	78796540	6845930	0	-	0.464646	(0.44,0.476]	chr17	677358	9	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:SS5_PROX:INTRON	USP36	ENSG00000055483.20	ENST00000588130.5:ENST00000587010.5:ENST00000591052.5:ENST00000589225.5:ENST00000587379.1:ENST00000592231.6:ENST00000449938.7:ENST00000592326.1:ENST00000542802.7:ENST00000693020.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	69	2	2.03266	2.8249199999999997	3.61718	0.0155853	7.37432e-4	0.109411	0.02495
chr16	69581537	69581637	6380165	0	+	0.32	(0.28,0.32]	chr16	613167	126	INTRON	INTRON	NFAT5	ENSG00000102908.22	ENST00000426654.6:ENST00000349945.7:ENST00000354436.6:ENST00000627621.3:ENST00000650987.1:ENST00000567990.5:ENST00000567239.5:ENST00000393742.7:ENST00000565301.2:ENST00000566899.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	86	2	2.41625	2.8249	3.23355	0.004869	0.00419958	0.0607461	0.0592209
chr10	18626286	18626386	4570462	0	-	0.56	(0.515,0.57]	chr10	421519	96	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7:ENST00000606425.2	protein_coding	protein_coding	protein_coding	protein_coding	3	53	2	1.94945	2.824875	3.7003	0.0414068	3.73715e-4	0.161557	0.0179087
chr1	113089818	113089918	188260	0	+	0.44	(0.408,0.44]	chr1	20854	158	INTRON	INTRON	LRIG2	ENSG00000198799.12	ENST00000361127.6	protein_coding	protein_coding	protein_coding	protein_coding	4	77	2	2.82461	2.82486	2.82511	0.00241819	0.00189528	0.0442901	0.0402736
chr16	16541703	16541803	6311279	0	+	0.39	(0.378,0.408]	chr16	604098	417	INTRON	INTRON	ENSG00000260126	ENSG00000260126.2	ENST00000567465.2	lncRNA	lncRNA	lncRNA	lncRNA	18	337	2	2.62637	2.82485	3.02333	3.98817e-5	7.75579e-6	0.00512679	0.00209823
chr4	1879521	1879621	1910651	0	+	0.41	(0.408,0.44]	chr4	191707	76	INTRON	INTRON	NSD2	ENSG00000109685.19	ENST00000508803.6:ENST00000507820.5:ENST00000508355.5:ENST00000514045.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	127	2	2.67325	2.824735	2.97622	0.00143252	7.35724e-5	0.0340925	0.00714826
chr6	13925466	13925566	2822184	0	+	0.39	(0.378,0.408]	chr6	265129	1	SS5_PROX	SS5_PROX:INTRON	RNF182	ENSG00000180537.13	ENST00000537663.5:ENST00000488763.5:ENST00000544682.5:ENST00000420478.2:ENST00000488300.6:ENST00000471906.1:ENST00000537388.1:ENST00000423553.6	protein_coding	protein_coding	protein_coding	protein_coding	4	79	2	2.63057	2.8247150000000003	3.01886	0.0053733	7.99379e-4	0.0642754	0.0258804
chr16	227886	227986	6426176	0	-	0.39	(0.378,0.408]	chr16	617450	3	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	LUC7L	ENSG00000007392.17	ENST00000337351.8:ENST00000426094.5:ENST00000397783.5:ENST00000629543.2:ENST00000490762.5:ENST00000293872.13:ENST00000419516.5:ENST00000418978.5:ENST00000430864.5:ENST00000494366.5:ENST00000428363.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	107	2	1.4946	2.824715	4.15483	0.024523	6.54278e-5	0.131869	0.00715707
chr17	64820066	64820157	6817665	0	-	0.318681	(0.28,0.32]	chr17	674066	4	EXON_LNCRNA	EXON_LNCRNA:INTRON	PLEKHM1P1	ENSG00000214176.10	ENST00000578036.5:ENST00000582986.5:ENST00000582201.5:ENST00000692349.1:ENST00000580919.5:ENST00000691202.1:ENST00000397718.8	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	2	53	2	2.57195	2.824695	3.07744	0.0331711	0.00604536	0.133994	0.0700813
chr20	35711119	35711219	7336228	0	-	0.41	(0.408,0.44]	chr20	747422	3	INTRON	INTRON	RBM39	ENSG00000131051.24	ENST00000253363.11:ENST00000639702.1:ENST00000656873.1:ENST00000463004.5:ENST00000361162.10:ENST00000461283.5:ENST00000403542.6:ENST00000338163.10:ENST00000528062.7:ENST00000429968.5:ENST00000444878.5:ENST00000665058.1:ENST00000476806.5:ENST00000495293.5:ENST00000492779.5:ENST00000465158.5:ENST00000448303.5:ENST00000470563.5:ENST00000615771.5:ENST00000471635.5:ENST00000475651.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	117	2	2.52768	2.824695	3.12171	6.63666e-4	4.47322e-4	0.0234815	0.0191768
chr3	152384677	152384777	1536148	0	+	0.3	(0.28,0.32]	chr3	160003	491	INTRON	INTRON	MBNL1	ENSG00000152601.18	ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000495875.6:ENST00000324210.10:ENST00000493459.5:ENST00000459747.1:ENST00000460591.5:ENST00000545754.5:ENST00000357472.7:ENST00000324196.9:ENST00000498502.5:ENST00000463374.5:ENST00000485910.5:ENST00000465907.6:ENST00000492948.5:ENST00000485509.5:ENST00000464596.5	protein_coding	protein_coding	protein_coding	protein_coding	2	53	2	2.57195	2.824695	3.07744	0.0331711	0.00604536	0.133994	0.0700813
chr1	36258481	36258581	73272	0	+	0.58	(0.57,1]	chr1	9371	327	INTRON	INTRON	THRAP3	ENSG00000054118.15	ENST00000469141.6:ENST00000648638.1:ENST00000354618.10	protein_coding	protein_coding	protein_coding	protein_coding	4	40	2	1.67986	2.824605	3.96935	0.0496395	4.27649e-5	0.174685	0.00555805
chr7	74663765	74663865	3335307	0	+	0.32	(0.28,0.32]	chr7	310340	53	INTRON	INTRON	GTF2I	ENSG00000263001.8	ENST00000650807.1:ENST00000690345.1:ENST00000613513.1:ENST00000573035.6:ENST00000614986.4:ENST00000620879.4:ENST00000621734.4:ENST00000443166.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	53	2	2.73077	2.824545	2.91832	0.0220748	0.0102484	0.115395	0.089002
chr22	16803584	16803683	7546436	0	-	0.424242	(0.408,0.44]	chr22	771321	32	INTRON	INTRON	XKR3	ENSG00000172967.8	ENST00000331428.5:ENST00000684488.1	protein_coding	protein_coding	protein_coding	protein_coding	7	128	2	2.55902	2.824505	3.08999	7.64731e-4	1.89472e-4	0.0254338	0.0125683
chr12	68647492	68647592	5161574	0	+	0.37	(0.35,0.378]	chr12	488592	1	SS3_PROX	SS3_PROX:INTRON	RAP1B	ENSG00000127314.18	ENST00000460800.5:ENST00000393436.9:ENST00000250559.14:ENST00000425247.6:ENST00000501412.2:ENST00000450214.6:ENST00000463493.5:ENST00000537460.5:ENST00000341355.9:ENST00000538283.5:ENST00000541167.5:ENST00000422358.6:ENST00000489473.6:ENST00000545270.5:ENST00000538980.5:ENST00000543393.5:ENST00000542018.5:ENST00000540209.5:ENST00000378985.7:ENST00000453560.6:ENST00000534899.5:ENST00000542145.5:ENST00000539091.5:ENST00000535492.5:ENST00000540781.5:ENST00000485252.6:ENST00000538877.5:ENST00000541386.5:ENST00000543697.5:ENST00000545720.6:ENST00000541216.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	114	2	2.47623	2.8244350000000003	3.17264	0.0012627	6.16722e-4	0.0329641	0.0229036
chr1	65364234	65364334	136639	0	+	0.28	[0,0.28]	chr1	15359	2	SS3_PROX	SS3_PROX:INTRON	DNAJC6	ENSG00000116675.16	ENST00000463018.5:ENST00000494710.6:ENST00000263441.11:ENST00000395325.7:ENST00000483402.1:ENST00000371069.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	61	2	2.74901	2.824415	2.89982	0.0188843	0.0158893	0.118148	0.101453
chr1	235281839	235281939	663399	0	-	0.22	[0,0.28]	chr1	78552	207	INTRON	INTRON	ARID4B	ENSG00000054267.22	ENST00000349213.7:ENST00000366603.6:ENST00000264183.9:ENST00000421364.5:ENST00000491632.5:ENST00000418304.1:ENST00000466653.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	89	2	2.44242	2.8243549999999997	3.20629	0.0491024	5.56536e-4	0.155269	0.0214853
chr10	63235271	63235371	4633080	0	-	0.53	(0.515,0.57]	chr10	426215	149	INTRON	INTRON	JMJD1C	ENSG00000171988.20	ENST00000399262.7:ENST00000402544.5:ENST00000542921.5:ENST00000469152.5:ENST00000489372.4:ENST00000633035.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	79	2	2.64171	2.82432	3.00693	0.00130576	7.26845e-4	0.0331539	0.0245647
chr5	60956327	60956427	2359331	0	+	0.39	(0.378,0.408]	chr5	227644	105	INTRON	INTRON	NDUFAF2	ENSG00000164182.12	ENST00000678452.1:ENST00000677756.1:ENST00000296597.10:ENST00000511107.1:ENST00000677932.1:ENST00000502658.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	44	2	2.53503	2.824315	3.1136	0.0319942	0.00443339	0.13174	0.061054
chr6	70449893	70449993	2894370	0	+	0.38	(0.378,0.408]	chr6	273957	211	INTRON	INTRON	FAM135A	ENSG00000082269.17	ENST00000505769.5:ENST00000515323.5:ENST00000418814.7:ENST00000515280.5:ENST00000507085.5:ENST00000457062.6:ENST00000361499.7:ENST00000370479.7:ENST00000194672.11:ENST00000505868.1:ENST00000393299.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	44	2	2.53503	2.824315	3.1136	0.0319942	0.00443339	0.13174	0.061054
chr10	131936781	131936880	4537226	0	+	0.454545	(0.44,0.476]	chr10	418877	14	INTRON	INTRON	PPP2R2D	ENSG00000175470.20	ENST00000455566.6:ENST00000616467.4:ENST00000482010.6:ENST00000470416.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	68	2	2.42643	2.824175	3.22192	0.00360821	0.0033369	0.0533855	0.0528877
chr3	194454065	194454161	1890863	0	-	0.427083	(0.408,0.44]	chr3	189206	4	EXON_MRNA	EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ATP13A3	ENSG00000133657.17	ENST00000687055.1:ENST00000645538.1:ENST00000645319.2:ENST00000690810.1:ENST00000642744.2:ENST00000439040.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	13	136	2	1.68803	2.82411	3.96019	0.00448328	1.56132e-4	0.0611528	0.0113571
chr7	119667664	119667764	3628013	0	-	0.33	(0.32,0.35]	chr7	337315	1672	INTRON	INTRON	LINC02476	ENSG00000225546.6	ENST00000660268.1	lncRNA	lncRNA	lncRNA	lncRNA	6	122	2	2.50667	2.82411	3.14155	0.00118337	8.11889e-4	0.031662	0.0263656
chr14	95533254	95533354	5965451	0	-	0.27	[0,0.28]	chr14	566634	14	EXON_LNCRNA	EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SNHG10	ENSG00000247092.8	ENST00000667310.2:ENST00000671157.2:ENST00000654925.1:ENST00000667668.1:ENST00000658932.2:ENST00000500370.2:ENST00000554169.2:ENST00000693219.1:ENST00000685307.1:ENST00000691619.1:ENST00000689247.1:ENST00000687146.1:ENST00000660378.2:ENST00000689758.1:ENST00000690868.1:ENST00000693520.1:ENST00000685703.1:ENST00000690961.1:ENST00000689823.1:ENST00000689442.1:ENST00000688138.1:ENST00000693718.1:ENST00000688462.1:ENST00000553559.1:ENST00000555866.5:ENST00000691606.1:ENST00000688965.1	lncRNA	lncRNA	lncRNA	lncRNA	4	98	2	2.40162	2.824105	3.24659	0.00570201	0.00511828	0.0656459	0.064713
chr9	130838715	130838815	4215112	0	+	0.31	(0.28,0.32]	chr9	386432	28	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000393293.4:ENST00000318560.6	protein_coding	protein_coding	protein_coding	protein_coding	4	97	2	2.76883	2.824085	2.87934	0.00414663	0.00189034	0.0568239	0.0402736
chr3	6675922	6676022	1358003	0	+	0.39	(0.378,0.408]	chr3	142522	915	INTRON	INTRON	ENSG00000189229	ENSG00000189229.12	ENST00000433639.1:ENST00000655754.1:ENST00000658468.1:ENST00000669512.1:ENST00000667028.1:ENST00000655541.1:ENST00000668643.1:ENST00000671568.1:ENST00000671036.1:ENST00000669798.1:ENST00000655753.1:ENST00000655856.1:ENST00000658398.1:ENST00000661518.1:ENST00000661279.1:ENST00000655495.1:ENST00000663041.1:ENST00000659827.1:ENST00000667716.1:ENST00000668416.1:ENST00000658133.1:ENST00000342990.4:ENST00000660054.1:ENST00000671370.1	lncRNA	lncRNA	lncRNA	lncRNA	2	31	2	1.8252	2.82407	3.82294	0.0619563	0.044228	0.174514	0.162255
chr14	31016038	31016138	5857770	0	-	0.39	(0.378,0.408]	chr14	556512	9	INTRON	INTRON	STRN3	ENSG00000196792.12	ENST00000355683.9:ENST00000357479.10:ENST00000555358.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	59	2	2.74646	2.82404	2.90162	0.0113157	0.00271684	0.0886121	0.0481064
chr15	34143424	34143524	6130711	0	-	0.38	(0.378,0.408]	chr15	583880	4	SS3_PROX	SS3_PROX:INTRON	KATNBL1	ENSG00000134152.11	ENST00000256544.8:ENST00000561270.5:ENST00000558681.1:ENST00000561371.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	59	2	2.74646	2.82404	2.90162	0.0113157	0.00271684	0.0886121	0.0481064
chr17	46030305	46030402	6783216	0	-	0.381443	(0.378,0.408]	chr17	669144	5	UTR3	UTR3:EXON_MRNA	KANSL1	ENSG00000120071.15	ENST00000574590.6:ENST00000572904.6:ENST00000432791.7:ENST00000572218.5:ENST00000575318.6:ENST00000638275.1:ENST00000576870.5:ENST00000262419.10:ENST00000648792.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	59	2	2.74646	2.82404	2.90162	0.0113157	0.00271684	0.0886121	0.0481064
chr12	98599203	98599286	5199044	0	+	0.506024	(0.476,0.515]	chr12	491869	1	INTRON	INTRON	SLC25A3	ENSG00000075415.15	ENST00000401722.7:ENST00000188376.9:ENST00000551917.5:ENST00000546766.5:ENST00000228318.8:ENST00000552981.6:ENST00000551123.5:ENST00000549338.5:ENST00000548847.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	109	2	2.72421	2.824035	2.92386	0.00107964	3.01132e-4	0.0302522	0.0155054
chr16	81661446	81661542	6407177	0	+	0.395833	(0.378,0.408]	chr16	615075	1	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5:ENST00000398040.8:ENST00000566462.2	protein_coding	protein_coding	protein_coding	protein_coding	2	44	2	2.78946	2.824	2.85854	0.0158859	0.0107837	0.101453	0.0920575
chr21	6485573	6485667	7425323	0	-	0.404255	(0.378,0.408]	chr21	757460	8	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	ENSG00000275895	ENSG00000275895.7	ENST00000610664.5:ENST00000623375.3:ENST00000637320.1:ENST00000639996.1:ENST00000620065.4:ENST00000636923.1:ENST00000624739.1:ENST00000619610.2:ENST00000636315.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	44	2	2.78946	2.824	2.85854	0.0158859	0.0107837	0.101453	0.0920575
chr17	62047058	62047158	6810698	0	-	0.57	(0.515,0.57]	chr17	672946	111	INTRON	INTRON	MED13	ENSG00000108510.10	ENST00000397786.7	protein_coding	protein_coding	protein_coding	protein_coding	13	191	2	2.7806	2.823975	2.86735	1.13426e-4	7.13552e-6	0.00957524	0.00189435
chr7	139082206	139082303	3656143	0	-	0.474227	(0.44,0.476]	chr7	339437	16	INTRON	INTRON	ZC3HAV1	ENSG00000105939.14	ENST00000242351.10:ENST00000464606.5:ENST00000680309.1:ENST00000471652.1	protein_coding	protein_coding	protein_coding	protein_coding	5	91	2	2.70421	2.82397	2.94373	0.00143431	9.23275e-4	0.0340925	0.0278392
chr22	23208345	23208444	7483485	0	+	0.353535	(0.35,0.378]	chr22	763541	86	INTRON	INTRON	BCR	ENSG00000186716.21	ENST00000479188.5:ENST00000359540.7:ENST00000305877.13:ENST00000463770.5:ENST00000487679.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	64	2	2.59656	2.82396	3.05136	0.00638551	0.00578894	0.0693551	0.0684334
chr1	150491762	150491836	222887	0	+	0.351351	(0.35,0.378]	chr1	25144	1	SS5_PROX	SS5_PROX:INTRON	TARS2	ENSG00000143374.18	ENST00000369054.6:ENST00000369064.8:ENST00000606933.5:ENST00000369051.7:ENST00000467982.6:ENST00000480070.5:ENST00000463555.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	62	2	2.23651	2.82395	3.41139	0.020879	0.00143263	0.111766	0.0347139
chr21	46196371	46196470	7470538	0	-	0.434343	(0.408,0.44]	chr21	761463	1	SS3_PROX	SS3_PROX:INTRON	LSS	ENSG00000160285.15	ENST00000356396.8:ENST00000397728.8:ENST00000457828.6:ENST00000522411.5	protein_coding	protein_coding	protein_coding	protein_coding	10	167	2	2.67685	2.82388	2.97091	3.4851e-4	6.08131e-5	0.017404	0.00644153
chr7	129033456	129033556	3636366	0	-	0.42	(0.408,0.44]	chr7	338142	149	INTRON	INTRON	TNPO3	ENSG00000064419.14	ENST00000627585.2:ENST00000265388.10:ENST00000471234.5:ENST00000482320.5:ENST00000471166.1	protein_coding	protein_coding	protein_coding	protein_coding	3	57	2	2.69457	2.823765	2.95296	0.00929354	0.00331036	0.0817766	0.0527031
chr12	51007975	51008059	5324605	0	-	0.416667	(0.408,0.44]	chr12	507723	1	SS5_PROX	SS5_PROX:INTRON	SLC11A2	ENSG00000110911.17	ENST00000547688.7:ENST00000644495.1:ENST00000643884.1:ENST00000546636.5:ENST00000547198.5:ENST00000394904.9:ENST00000262052.9:ENST00000643123.1:ENST00000646740.1:ENST00000642227.1:ENST00000541174.6:ENST00000545993.7:ENST00000546743.5:ENST00000547510.5:ENST00000546488.5:ENST00000547579.5:ENST00000550714.5:ENST00000547732.5:ENST00000548193.5:ENST00000646988.1:ENST00000549625.1:ENST00000549193.5:ENST00000681324.1:ENST00000550995.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	70	2	2.64127	2.82361	3.00595	0.00781452	0.00125199	0.0759016	0.0328543
chr19	11114737	11114832	7017084	0	+	0.536842	(0.515,0.57]	chr19	697473	6	INTRON	INTRON	LDLR	ENSG00000130164.14	ENST00000557933.5:ENST00000558518.6:ENST00000545707.5:ENST00000535915.5:ENST00000455727.6:ENST00000558013.5:ENST00000252444.9:ENST00000559340.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	91	2	2.5204	2.823565	3.12673	9.8022e-4	3.95089e-4	0.0285591	0.0178567
chr14	55298305	55298405	5726065	0	+	0.43	(0.408,0.44]	chr14	543459	2	SS5_PROX	SS5_PROX:INTRON	FBXO34	ENSG00000178974.11	ENST00000681400.1:ENST00000681904.1:ENST00000679934.1:ENST00000681074.1:ENST00000680682.1:ENST00000680658.1:ENST00000313833.5:ENST00000554940.1:ENST00000440021.1:ENST00000555087.1:ENST00000557647.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	57	2	2.44674	2.8235400000000004	3.20034	0.00868283	0.00398025	0.0842798	0.0549214
chr17	46087330	46087429	6783806	0	-	0.363636	(0.35,0.378]	chr17	669199	44	INTRON	INTRON	KANSL1	ENSG00000120071.15	ENST00000574590.6:ENST00000572904.6:ENST00000432791.7:ENST00000575318.6:ENST00000638275.1:ENST00000262419.10:ENST00000648792.1:ENST00000639531.1:ENST00000639150.1:ENST00000639853.1:ENST00000571698.2:ENST00000639375.1:ENST00000577114.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	83	2	2.73164	2.8234000000000004	2.91516	0.00387645	0.0013628	0.0543578	0.0339121
chr15	72519633	72519733	6059615	0	+	0.48	(0.476,0.515]	chr15	576864	11	INTRON	INTRON	ARIH1	ENSG00000166233.15	ENST00000379887.9:ENST00000570085.5:ENST00000564062.1:ENST00000567762.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	42	2	2.69967	2.823295	2.94692	0.0195838	0.00794331	0.109483	0.0797304
chr21	10342115	10342215	7427443	0	-	0.37	(0.35,0.378]	chr21	757682	1	SS5_PROX	SS5_PROX:INTRON	ENSG00000277693	ENSG00000277693.2	ENST00000622592.1:ENST00000616952.1:ENST00000667012.1	lncRNA	lncRNA	lncRNA	lncRNA	8	164	2	2.57806	2.823285	3.06851	7.61742e-4	9.84791e-5	0.0253498	0.00896038
chrX	101355081	101355178	7855809	0	-	0.536082	(0.515,0.57]	chrX	800870	5	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	BTK	ENSG00000010671.18	ENST00000695616.1:ENST00000695617.1:ENST00000695615.1:ENST00000695614.1:ENST00000621635.4:ENST00000697417.1:ENST00000695620.1:ENST00000308731.8:ENST00000695619.1:ENST00000695618.1:ENST00000478995.2:ENST00000488970.2:ENST00000695621.1:ENST00000695622.1:ENST00000695623.1:ENST00000695624.1:ENST00000695625.1:ENST00000695626.1:ENST00000695627.1:ENST00000695628.1:ENST00000695629.1:ENST00000695630.1:ENST00000695631.1:ENST00000695632.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	131	2	2.25762	2.823255	3.38889	9.74778e-4	2.14587e-5	0.0287765	0.00377331
chr10	63254357	63254457	4633271	0	-	0.26	[0,0.28]	chr10	426215	340	INTRON	INTRON	JMJD1C	ENSG00000171988.20	ENST00000399262.7:ENST00000402544.5:ENST00000542921.5:ENST00000469152.5:ENST00000489372.4:ENST00000633035.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	60	2	2.68918	2.823235	2.95729	0.0275571	0.0101824	0.123904	0.089002
chr2	190692182	190692279	959474	0	+	0.257732	[0,0.28]	chr2	104154	20	UTR3	UTR3:EXON_MRNA	NAB1	ENSG00000138386.17	ENST00000337386.10	protein_coding	protein_coding	protein_coding	protein_coding	2	60	2	2.68918	2.823235	2.95729	0.0275571	0.0101824	0.123904	0.089002
chr1	53818370	53818470	460407	0	-	0.43	(0.408,0.44]	chr1	55420	83	INTRON	INTRON	NDC1	ENSG00000058804.12	ENST00000371429.4	protein_coding	protein_coding	protein_coding	protein_coding	3	58	2	2.27464	2.82313	3.37162	0.0158016	0.00208674	0.109464	0.0411801
chr7	128749104	128749204	3408478	0	+	0.39	(0.378,0.408]	chr7	318434	3	SS5_PROX	SS5_PROX:INTRON	CALU	ENSG00000128595.17	ENST00000535011.6:ENST00000542996.6:ENST00000249364.9:ENST00000449187.6:ENST00000479257.5	protein_coding	protein_coding	protein_coding	protein_coding	6	90	2	2.13711	2.8230899999999997	3.50907	0.00329758	0.00127828	0.0527031	0.0326395
chr4	102811188	102811288	2213196	0	-	0.54	(0.515,0.57]	chr4	216758	9	EXON_MRNA	EXON_MRNA:INTRON	UBE2D3	ENSG00000109332.20	ENST00000453744.7:ENST00000394804.6:ENST00000394803.9:ENST00000394801.8:ENST00000343106.9:ENST00000508474.5:ENST00000503742.5:ENST00000321805.11:ENST00000350435.11:ENST00000338145.7:ENST00000349311.12:ENST00000504211.5:ENST00000357194.10:ENST00000505207.5:ENST00000507845.5:ENST00000502404.5:ENST00000508635.5:ENST00000505307.5:ENST00000510129.5:ENST00000508476.5:ENST00000502563.5:ENST00000508238.5:ENST00000514755.5:ENST00000508974.5:ENST00000502690.5:ENST00000508818.5:ENST00000503418.5:ENST00000508249.1:ENST00000513098.5:ENST00000503282.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	92	2	1.90463	2.823035	3.74144	0.0141753	1.04004e-5	0.0959618	0.00235262
chr1	35972632	35972732	71563	0	+	0.45	(0.44,0.476]	chr1	9150	4	SS5_PROX	SS5_PROX:INTRON	AGO3	ENSG00000126070.20	ENST00000324350.9:ENST00000397828.3:ENST00000634486.1:ENST00000373191.9:ENST00000246314.10:ENST00000491443.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	94	2	1.77578	2.8230049999999998	3.87023	0.0105236	2.32199e-4	0.0908969	0.0139633
chr21	37440073	37440173	7406962	0	+	0.29	(0.28,0.32]	chr21	754891	93	INTRON	INTRON	DYRK1A	ENSG00000157540.22	ENST00000646523.1:ENST00000647425.1:ENST00000647188.2:ENST00000647504.1:ENST00000644942.1:ENST00000338785.8:ENST00000643624.1:ENST00000643551.1:ENST00000426672.6:ENST00000398960.7:ENST00000646548.1:ENST00000645424.1:ENST00000643854.1:ENST00000455097.6:ENST00000642309.1:ENST00000645774.1:ENST00000398956.2	protein_coding	protein_coding	protein_coding	protein_coding	7	121	2	2.09576	2.8228549999999997	3.54995	0.00323062	0.00157396	0.0524329	0.0361918
chr7	107117156	107117255	3377893	0	+	0.373737	(0.35,0.378]	chr7	316252	249	INTRON	INTRON	PRKAR2B	ENSG00000005249.13	ENST00000265717.5:ENST00000393613.6:ENST00000488792.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	106	2	1.87726	2.8226649999999998	3.76807	0.0297629	1.44997e-5	0.12908	0.0028542
chr3	141745971	141746071	1526050	0	+	0.5	(0.476,0.515]	chr3	158992	8	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	RNF7	ENSG00000114125.14	ENST00000273480.4:ENST00000486377.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	118	2	2.37523	2.822635	3.27004	0.00132439	2.20887e-4	0.0332819	0.0130309
chr2	70086543	70086643	1151260	0	-	0.71	(0.57,1]	chr2	122943	11	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	PCBP1-AS1	ENSG00000179818.16	ENST00000684630.1:ENST00000435880.6:ENST00000628659.2:ENST00000628308.2:ENST00000629603.2:ENST00000629836.2:ENST00000626842.2:ENST00000457076.5:ENST00000628667.2:ENST00000631110.2:ENST00000626609.2:ENST00000413436.5:ENST00000628147.2:ENST00000631107.2:ENST00000415222.5:ENST00000685127.1:ENST00000684907.1:ENST00000685079.1:ENST00000687866.1:ENST00000692564.1:ENST00000692333.1:ENST00000691987.1:ENST00000601431.6:ENST00000686800.1:ENST00000684857.1:ENST00000688473.1:ENST00000627074.2:ENST00000599673.5:ENST00000629178.2:ENST00000596028.5:ENST00000452431.5:ENST00000423402.5:ENST00000629188.2:ENST00000434781.5:ENST00000654878.1:ENST00000659586.1:ENST00000657575.2:ENST00000689275.1:ENST00000692733.1:ENST00000626509.3:ENST00000653064.1:ENST00000656326.1:ENST00000668711.1:ENST00000659305.1:ENST00000654601.1:ENST00000663375.1:ENST00000654958.1:ENST00000665838.1:ENST00000653606.1:ENST00000659941.1:ENST00000669583.1:ENST00000660903.1:ENST00000655058.1:ENST00000366234.7:ENST00000625518.2:ENST00000425333.5:ENST00000685037.1:ENST00000458698.6:ENST00000670786.1:ENST00000413791.5:ENST00000666167.1:ENST00000667307.1:ENST00000437019.2:ENST00000654716.1:ENST00000660404.2:ENST00000656852.1:ENST00000662224.1:ENST00000664533.1:ENST00000670313.1:ENST00000626558.3:ENST00000670974.1:ENST00000664754.1:ENST00000662103.1:ENST00000629943.3:ENST00000625788.3:ENST00000662425.1:ENST00000596573.5:ENST00000594548.5	lncRNA	lncRNA	lncRNA	lncRNA	4	38	2	1.89351	2.8225800000000003	3.75165	0.0255126	1.54884e-4	0.133676	0.0113252
chr8	97649882	97649982	3809116	0	+	0.37	(0.35,0.378]	chr8	352836	46	INTRON	INTRON	MTDH	ENSG00000147649.10	ENST00000336273.8:ENST00000519934.5:ENST00000522313.1	protein_coding	protein_coding	protein_coding	protein_coding	5	103	2	2.35838	2.822565	3.28675	0.00468156	3.6403e-4	0.0631419	0.0176829
chr10	101813302	101813378	4680925	0	-	0.434211	(0.408,0.44]	chr10	432017	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	OGA	ENSG00000198408.14	ENST00000439817.5:ENST00000361464.8:ENST00000357797.9:ENST00000370094.7:ENST00000429860.1	protein_coding	protein_coding	protein_coding	protein_coding	5	82	2	1.40374	2.822385	4.24103	0.0721345	1.8653e-5	0.187433	0.00329969
chr4	70935726	70935826	1970839	0	+	0.54	(0.515,0.57]	chr4	197571	328	INTRON	INTRON	MOB1B	ENSG00000173542.9	ENST00000502869.5:ENST00000509041.5:ENST00000309395.7:ENST00000396051.2:ENST00000511449.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	33	2	1.44089	2.82235	4.20381	0.0617046	0.0189208	0.193423	0.108861
chr3	44784344	44784444	1412450	0	+	0.46	(0.44,0.476]	chr3	148176	1	SS3_PROX	SS3_PROX:INTRON	KIF15	ENSG00000163808.17	ENST00000438321.5:ENST00000326047.9:ENST00000481166.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	71	2	2.38636	2.822185	3.25801	0.0047296	0.00248185	0.0600445	0.0460771
chr2	38296900	38297000	1098518	0	-	0.23	[0,0.28]	chr2	117794	2	SS3_PROX	SS3_PROX:INTRON	ATL2	ENSG00000119787.14	ENST00000378954.9:ENST00000406122.5:ENST00000405384.6:ENST00000402054.5:ENST00000419554.6:ENST00000651368.1:ENST00000452935.6:ENST00000629272.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	81	2	2.56073	2.822165	3.0836	0.00940284	0.00743095	0.0817766	0.0772645
chr11	108295340	108295433	4857843	0	+	0.408602	(0.408,0.44]	chr11	453229	4	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	ATM	ENSG00000149311.20	ENST00000675843.1:ENST00000683174.1:ENST00000527805.6:ENST00000675595.1:ENST00000452508.6:ENST00000278616.9:ENST00000524792.5:ENST00000531525.2:ENST00000683524.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	43	2	2.43988	2.8221249999999998	3.20437	0.0398236	0.00306596	0.143072	0.0509893
chr6	99419223	99419323	3166087	0	-	0.41	(0.408,0.44]	chr6	295334	24	INTRON	INTRON	PNISR	ENSG00000132424.17	ENST00000681615.1:ENST00000369239.10:ENST00000647811.1:ENST00000481229.2:ENST00000679525.1:ENST00000681611.1:ENST00000438806.5:ENST00000478777.5:ENST00000492294.5:ENST00000498075.1:ENST00000466057.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	43	2	2.43988	2.8221249999999998	3.20437	0.0398236	0.00306596	0.143072	0.0509893
chr7	98943805	98943901	3359933	0	+	0.416667	(0.408,0.44]	chr7	313524	4	INTRON	INTRON	TRRAP	ENSG00000196367.14	ENST00000355540.7:ENST00000359863.8:ENST00000628380.2:ENST00000456197.2:ENST00000446306.7	protein_coding	protein_coding	protein_coding	protein_coding	2	43	2	2.43988	2.8221249999999998	3.20437	0.0398236	0.00306596	0.143072	0.0509893
chr8	127825975	127826075	3860361	0	+	0.43	(0.408,0.44]	chr8	355402	57	INTRON	INTRON	PVT1	ENSG00000249859.13	ENST00000667305.1:ENST00000690350.1:ENST00000653522.1:ENST00000664214.1:ENST00000664139.1:ENST00000661830.1:ENST00000657289.1:ENST00000504719.7:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000656880.1:ENST00000660200.1:ENST00000669132.1:ENST00000657211.1:ENST00000653845.1:ENST00000517525.2:ENST00000665856.1:ENST00000651587.1:ENST00000692980.1:ENST00000666353.1:ENST00000657183.1:ENST00000654324.1:ENST00000658556.1:ENST00000657693.1:ENST00000666080.1:ENST00000667539.1:ENST00000521951.1:ENST00000524165.6:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000664293.1:ENST00000657297.1:ENST00000662410.1:ENST00000670795.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000654091.1:ENST00000523328.6:ENST00000657356.1:ENST00000523427.2:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000662061.1:ENST00000667204.1:ENST00000656491.1:ENST00000667714.1:ENST00000654105.1:ENST00000665721.1:ENST00000518528.2:ENST00000669416.1:ENST00000660438.1:ENST00000661160.1:ENST00000659326.1:ENST00000665246.1:ENST00000657384.1:ENST00000666842.1:ENST00000517790.2:ENST00000522963.6:ENST00000654369.1:ENST00000661625.1:ENST00000657596.1:ENST00000664995.1:ENST00000656532.1:ENST00000661988.1:ENST00000657517.1:ENST00000670714.1:ENST00000669951.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000656693.1:ENST00000668123.1:ENST00000666776.1:ENST00000664299.1:ENST00000669272.1:ENST00000659912.1:ENST00000670532.1:ENST00000660896.1:ENST00000667149.1:ENST00000656396.1:ENST00000523068.2	lncRNA	lncRNA	lncRNA	lncRNA	4	69	2	1.96534	2.8221	3.67886	0.0216499	3.86173e-4	0.11491	0.017761
chr2	63915071	63915166	1138953	0	-	0.505263	(0.476,0.515]	chr2	121953	4	INTRON	INTRON	VPS54	ENSG00000143952.20	ENST00000409558.8:ENST00000272322.9:ENST00000354504.7:ENST00000416400.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	42	2	2.63168	2.8218249999999996	3.01197	0.0237106	0.00633162	0.118716	0.0722266
chr6	57923916	57924016	3115053	0	-	0.48	(0.476,0.515]	chr6	291805	1	SS5_PROX	SS5_PROX:INTRON	GUSBP4	ENSG00000239650.4	ENST00000423899.1	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	2	42	2	2.63168	2.8218249999999996	3.01197	0.0237106	0.00633162	0.118716	0.0722266
chr9	83690943	83691042	4272912	0	-	0.515152	(0.476,0.515]	chr9	392981	44	INTRON	INTRON	UBQLN1	ENSG00000135018.14	ENST00000376395.9:ENST00000257468.11:ENST00000529923.1	protein_coding	protein_coding	protein_coding	protein_coding	2	42	2	2.63168	2.8218249999999996	3.01197	0.0237106	0.00633162	0.118716	0.0722266
chr10	73020889	73020989	4647075	0	-	0.45	(0.44,0.476]	chr10	427494	36	INTRON	INTRON	P4HA1	ENSG00000122884.13	ENST00000394890.7:ENST00000307116.6:ENST00000373008.6:ENST00000440381.5:ENST00000263556.3	protein_coding	protein_coding	protein_coding	protein_coding	3	57	2	2.13779	2.821815	3.50584	0.0264596	8.66138e-4	0.122506	0.0266729
chr16	68118987	68119087	6370560	0	+	0.57	(0.515,0.57]	chr16	612188	294	INTRON	INTRON	ENSG00000261864:NFATC3	ENSG00000261864.1:ENSG00000072736.19	ENST00000548144.1:ENST00000563319.5:ENST00000569766.5:ENST00000553077.5:ENST00000566301.5:ENST00000549350.5:ENST00000566893.5:ENST00000575270.5:ENST00000561714.5:ENST00000346183.8:ENST00000568466.6:ENST00000539828.6:ENST00000562171.1:ENST00000349223.9:ENST00000329524.8:ENST00000379165.8:ENST00000562926.5:ENST00000570212.5:ENST00000563796.5:ENST00000567152.5:ENST00000563288.5:ENST00000535127.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA:processed_transcript	3	49	2	2.27238	2.821815	3.37125	0.0161808	0.00136343	0.101453	0.0339121
chr17	2601671	2601771	6547514	0	+	0.57	(0.515,0.57]	chr17	635203	69	INTRON	INTRON	PAFAH1B1	ENSG00000007168.14	ENST00000576586.5:ENST00000397195.10:ENST00000676201.1:ENST00000575477.5:ENST00000675621.1:ENST00000676353.1:ENST00000674717.1:ENST00000675202.1:ENST00000675764.1:ENST00000674608.1:ENST00000676077.1:ENST00000676098.1:ENST00000572915.6:ENST00000570400.1:ENST00000571289.1:ENST00000675430.1:ENST00000675331.1:ENST00000676188.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	49	2	2.27238	2.821815	3.37125	0.0161808	0.00136343	0.101453	0.0339121
chr19	21723161	21723259	7158852	0	-	0.428571	(0.408,0.44]	chr19	723701	5	UTR3	UTR3:EXON_MRNA	ZNF100	ENSG00000197020.12	ENST00000358296.11	protein_coding	protein_coding	protein_coding	protein_coding	4	70	2	2.23023	2.82173	3.41323	0.0087201	0.00129989	0.0788605	0.0333764
chr3	21549293	21549393	1387401	0	+	0.44	(0.408,0.44]	chr3	145351	59	INTRON	INTRON	ZNF385D-AS1	ENSG00000225542.2	ENST00000662195.1:ENST00000412369.1	lncRNA	lncRNA	lncRNA	lncRNA	4	70	2	2.23023	2.82173	3.41323	0.0087201	0.00129989	0.0788605	0.0333764
chr1	167725735	167725835	247802	0	+	0.48	(0.476,0.515]	chr1	29490	31	INTRON	INTRON	MPZL1	ENSG00000197965.12	ENST00000464954.1:ENST00000359523.7:ENST00000448405.5:ENST00000392121.7:ENST00000465787.5:ENST00000474859.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	42	2	2.7646	2.821695	2.87879	0.0162075	0.00999149	0.101453	0.0879541
chr1	180099782	180099881	268935	0	+	0.484848	(0.476,0.515]	chr1	31532	4	INTRON	INTRON	CEP350	ENSG00000135837.16	ENST00000367607.8:ENST00000429851.5:ENST00000490141.5:ENST00000417046.1:ENST00000496440.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	42	2	2.7646	2.821695	2.87879	0.0162075	0.00999149	0.101453	0.0879541
chr16	31092864	31092964	6475126	0	-	0.49	(0.476,0.515]	chr16	626026	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	VKORC1	ENSG00000167397.15	ENST00000420057.2:ENST00000354895.4:ENST00000319788.11:ENST00000300851.10:ENST00000394975.3:ENST00000394971.7:ENST00000498155.1:ENST00000472468.1	protein_coding	protein_coding	protein_coding	protein_coding	2	42	2	2.7646	2.821695	2.87879	0.0162075	0.00999149	0.101453	0.0879541
chr22	28735322	28735418	7573449	0	-	0.510417	(0.476,0.515]	chr22	774425	2	INTRON	INTRON	CHEK2	ENSG00000183765.23	ENST00000416671.5:ENST00000348295.7:ENST00000404276.6:ENST00000425190.7:ENST00000649563.1:ENST00000405598.5:ENST00000382580.6:ENST00000650281.1:ENST00000433028.6:ENST00000439200.5:ENST00000650233.1:ENST00000398017.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	42	2	2.7646	2.821695	2.87879	0.0162075	0.00999149	0.101453	0.0879541
chr5	146245020	146245120	2514536	0	+	0.48	(0.476,0.515]	chr5	240194	72	INTRON	INTRON	ENSG00000275740:RBM27	ENSG00000275740.1:ENSG00000091009.8	ENST00000506502.2:ENST00000265271.7	protein_coding	protein_coding	protein_coding	protein_coding	2	42	2	2.7646	2.821695	2.87879	0.0162075	0.00999149	0.101453	0.0879541
chr10	94563076	94563176	4499794	0	+	0.4	(0.378,0.408]	chr10	414245	2	SS5_PROX	SS5_PROX:INTRON	HELLS	ENSG00000119969.15	ENST00000239026.10:ENST00000371332.8:ENST00000348459.10:ENST00000419900.5:ENST00000394036.5:ENST00000394045.5:ENST00000462057.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	95	2	2.42594	2.82163	3.21732	0.00428028	2.98082e-4	0.0574861	0.015483
chr19	799443	799534	6992114	0	+	0.637363	(0.57,1]	chr19	692236	1	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	PTBP1	ENSG00000011304.22	ENST00000635647.1:ENST00000627714.2:ENST00000676227.1:ENST00000677277.1:ENST00000592804.2:ENST00000349038.8:ENST00000590887.5:ENST00000586481.5:ENST00000586944.5:ENST00000356948.11:ENST00000394601.8:ENST00000677717.1:ENST00000589575.5:ENST00000587191.3:ENST00000679114.1:ENST00000350092.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	37	2	2.07956	2.821625	3.56369	0.013114	4.26536e-4	0.0998629	0.0189958
chr16	22331969	22332059	6321902	0	+	0.411111	(0.408,0.44]	chr16	605285	7	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	POLR3E	ENSG00000058600.16	ENST00000615879.4:ENST00000299853.10:ENST00000564209.5:ENST00000418581.6:ENST00000359210.8:ENST00000564750.5:ENST00000563282.1:ENST00000565117.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	43	2	2.74518	2.8215649999999997	2.89795	0.0152229	0.0110735	0.108535	0.0873897
chr3	197954451	197954549	1598778	0	+	0.489796	(0.476,0.515]	chr3	165720	1	SS5_PROX	SS5_PROX:INTRON	RPL35A	ENSG00000182899.17	ENST00000647248.2:ENST00000448864.6:ENST00000642387.1:ENST00000429437.5:ENST00000439255.1:ENST00000474640.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	164	2	2.28204	2.821535	3.36103	9.02946e-4	2.34907e-5	0.0278086	0.00379453
chr4	32083267	32083367	1942281	0	+	0.43	(0.408,0.44]	chr4	194727	851	INTRON	INTRON	LINC02506	ENSG00000251129.3	ENST00000662669.1:ENST00000665582.2:ENST00000667252.2:ENST00000660373.2:ENST00000684849.1:ENST00000513211.2:ENST00000659613.1:ENST00000657576.1:ENST00000686730.1:ENST00000685407.1:ENST00000685455.1:ENST00000655951.1	lncRNA	lncRNA	lncRNA	lncRNA	8	144	2	2.6466	2.821405	2.99621	6.99934e-4	6.51509e-5	0.024224	0.00669119
chr2	197402455	197402555	1306679	0	-	0.38	(0.378,0.408]	chr2	136679	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SF3B1	ENSG00000115524.17	ENST00000652026.1:ENST00000652738.1:ENST00000335508.11:ENST00000470268.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	198	2	2.73889	2.82139	2.90389	4.79448e-4	1.45532e-5	0.0203136	0.00285856
chr8	116724815	116724915	4033917	0	-	0.32	(0.28,0.32]	chr8	368058	272	INTRON	INTRON	EIF3H	ENSG00000147677.12	ENST00000521861.6:ENST00000276682.8:ENST00000518949.5:ENST00000518995.5:ENST00000522800.5:ENST00000518034.5:ENST00000517974.1:ENST00000522453.1:ENST00000519046.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	72	2	2.33381	2.82137	3.30893	0.0174951	0.00260504	0.104863	0.0470772
chr1	108950933	108951032	519051	0	-	0.313131	(0.28,0.32]	chr1	60921	6	UTR5	UTR5:EXON_MRNA:SS3_PROX:INTRON	CLCC1	ENSG00000121940.17	ENST00000690509.1:ENST00000687328.1:ENST00000685014.1:ENST00000685540.1:ENST00000686576.1:ENST00000688070.1:ENST00000691513.1:ENST00000686821.1:ENST00000692511.1:ENST00000689479.1:ENST00000687646.1:ENST00000687998.1:ENST00000687226.1:ENST00000693336.1:ENST00000689991.1:ENST00000687591.1:ENST00000691777.1:ENST00000690756.1:ENST00000688778.1:ENST00000685104.1:ENST00000689103.1:ENST00000687734.1:ENST00000686434.1:ENST00000685497.1:ENST00000691342.1:ENST00000686776.1:ENST00000692342.1:ENST00000689351.1:ENST00000692584.1:ENST00000692775.1:ENST00000687134.1:ENST00000675018.1:ENST00000690781.1:ENST00000691556.1:ENST00000689189.1:ENST00000687099.1:ENST00000685791.1:ENST00000687865.1:ENST00000687449.1:ENST00000688285.1:ENST00000686817.1:ENST00000369968.7:ENST00000674992.1:ENST00000675001.1:ENST00000369969.7:ENST00000356970.6:ENST00000688610.1:ENST00000675128.1:ENST00000693089.1:ENST00000675571.1:ENST00000675650.1:ENST00000369970.8:ENST00000674561.2:ENST00000675451.1:ENST00000675654.1:ENST00000675790.1:ENST00000675584.1:ENST00000692795.1:ENST00000691731.1:ENST00000689359.1:ENST00000676392.2:ENST00000676391.2:ENST00000676454.1:ENST00000674849.1:ENST00000675956.1:ENST00000302500.5:ENST00000675508.1:ENST00000688168.1:ENST00000693673.1:ENST00000692404.1:ENST00000686078.1:ENST00000690874.1:ENST00000692732.1:ENST00000685628.1:ENST00000676306.1:ENST00000676059.2:ENST00000674527.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	116	2	2.72123	2.821325	2.92142	0.00234443	0.00112621	0.0434875	0.0308424
chr7	5780666	5780759	3474965	0	-	0.408602	(0.408,0.44]	chr7	324932	5	INTRON	INTRON	RNF216	ENSG00000011275.19	ENST00000425013.6:ENST00000389902.8:ENST00000411812.1:ENST00000416985.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	46	2	2.3975	2.8213	3.2451	0.040266	0.00337792	0.161534	0.0516884
chr10	77854770	77854870	4654070	0	-	0.49	(0.476,0.515]	chr10	428756	4	SS3_PROX	SS3_PROX:INTRON	DLG5	ENSG00000151208.17	ENST00000372391.7:ENST00000475613.6:ENST00000468332.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	79	2	2.06011	2.82127	3.58243	0.00869033	6.18479e-4	0.0788605	0.0223951
chr16	14915265	14915363	6304702	0	+	0.510204	(0.476,0.515]	chr16	603076	30	INTRON	INTRON	PKD1P3	ENSG00000183458.14	ENST00000534164.6	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	5	79	2	2.06011	2.82127	3.58243	0.00869033	6.18479e-4	0.0788605	0.0223951
chr4	1957432	1957532	1911464	0	+	0.46	(0.44,0.476]	chr4	191835	1	SS3_PROX	SS3_PROX:INTRON	NSD2	ENSG00000109685.19	ENST00000508803.6:ENST00000382891.9:ENST00000353275.9:ENST00000382892.6:ENST00000382895.7:ENST00000312087.10:ENST00000677559.1:ENST00000482415.6:ENST00000382888.3:ENST00000507094.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	58	2	2.55649	2.8212	3.08591	0.00670547	0.00481262	0.0707084	0.0638089
chr18	36141694	36141780	6891545	0	+	0.406977	(0.378,0.408]	chr18	682995	3	SS5_PROX	SS5_PROX:INTRON	ELP2	ENSG00000134759.14	ENST00000543127.5:ENST00000351393.10:ENST00000545632.5:ENST00000442325.6:ENST00000358232.11:ENST00000423854.6:ENST00000539560.5:ENST00000542430.5:ENST00000350494.10:ENST00000542824.5:ENST00000540799.1:ENST00000543439.5:ENST00000540730.5:ENST00000540323.5:ENST00000536373.5:ENST00000535093.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	207	2	2.39853	2.821175	3.24382	0.00133926	2.48231e-6	0.0335551	0.00100001
chr17	61782363	61782459	6808112	0	-	0.364583	(0.35,0.378]	chr17	672558	10	INTRON	INTRON	BRIP1	ENSG00000136492.10	ENST00000259008.7:ENST00000682755.1:ENST00000682453.1:ENST00000683039.1:ENST00000682989.1:ENST00000682589.1:ENST00000683235.1:ENST00000682477.1:ENST00000684584.1:ENST00000682073.1:ENST00000577598.5:ENST00000682066.1:ENST00000584322.2:ENST00000683381.1:ENST00000579028.2:ENST00000682611.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	62	2	2.14264	2.821155	3.49967	0.0274795	9.80974e-4	0.123904	0.0287765
chr7	105045810	105045909	3374940	0	+	0.353535	(0.35,0.378]	chr7	315877	44	INTRON	INTRON	KMT2E	ENSG00000005483.22	ENST00000622386.2:ENST00000257745.9:ENST00000334884.9:ENST00000311117.8:ENST00000478990.5:ENST00000495267.5:ENST00000476671.5:ENST00000667857.1:ENST00000474203.5:ENST00000482560.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	115	2	2.16289	2.82111	3.47933	0.0015613	0.00135014	0.0360352	0.0338354
chr7	50779958	50780042	3532549	0	-	0.535714	(0.515,0.57]	chr7	329533	2	SS3_PROX	SS3_PROX:INTRON	GRB10	ENSG00000106070.20	ENST00000335866.7:ENST00000401949.6:ENST00000644769.1:ENST00000644879.1:ENST00000402497.6:ENST00000407526.6:ENST00000645075.2:ENST00000439044.7:ENST00000644716.1:ENST00000483819.1:ENST00000470992.5:ENST00000467386.5:ENST00000490051.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	65	2	2.67733	2.8209999999999997	2.96467	0.00366712	8.94279e-4	0.0535094	0.0273458
chr7	158649142	158649241	3688207	0	-	0.282828	(0.28,0.32]	chr7	342131	22	INTRON	INTRON	NCAPG2	ENSG00000146918.20	ENST00000356309.8:ENST00000432615.5:ENST00000409423.5:ENST00000441982.5:ENST00000467785.5:ENST00000409339.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	98	2	2.09198	2.820965	3.54995	0.00780964	0.00157396	0.0788246	0.0361918
chr12	24874231	24874331	5297156	0	-	0.45	(0.44,0.476]	chr12	503853	239	INTRON	INTRON	BCAT1	ENSG00000060982.15	ENST00000261192.12:ENST00000538118.5:ENST00000342945.9:ENST00000539282.5:ENST00000539780.5:ENST00000544418.1:ENST00000612790.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:processed_transcript	7	125	2	2.77169	2.820955	2.87022	8.89744e-4	1.38486e-4	0.0274757	0.0101334
chr10	60791389	60791489	4435903	0	+	0.36	(0.35,0.378]	chr10	409192	1	SS3_PROX	SS3_PROX:INTRON	CDK1	ENSG00000170312.17	ENST00000519078.6:ENST00000316629.8:ENST00000395284.8:ENST00000448257.6:ENST00000373809.2:ENST00000487784.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	47	2	2.32443	2.820895	3.31736	0.0544216	0.00211072	0.164972	0.0425419
chr3	138821718	138821818	1831370	0	-	0.38	(0.378,0.408]	chr3	184062	248	INTRON	INTRON	PIK3CB	ENSG00000051382.9	ENST00000674063.1:ENST00000477593.5:ENST00000462898.5:ENST00000483968.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	132	2	2.09986	2.820865	3.54187	0.00253099	9.09909e-5	0.0465056	0.00848955
chr10	69346476	69346575	4446156	0	+	0.292929	(0.28,0.32]	chr10	410237	21	INTRON	INTRON	HK1	ENSG00000156515.24	ENST00000436817.6:ENST00000360289.6:ENST00000448642.6:ENST00000483077.5:ENST00000643399.2:ENST00000421088.5:ENST00000298649.8:ENST00000359426.7:ENST00000493591.6:ENST00000494253.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	53	2	2.51488	2.8208399999999996	3.1268	0.0380957	0.00508956	0.141678	0.0646039
chr2	53960361	53960461	1120472	0	-	0.44	(0.408,0.44]	chr2	120102	107	INTRON	INTRON	PSME4	ENSG00000068878.15	ENST00000404125.6:ENST00000389993.7:ENST00000481518.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	60	2	2.58624	2.820785	3.05533	0.0273686	6.50769e-4	0.123904	0.0231135
chr1	1474282	1474382	1590	0	+	0.55	(0.515,0.57]	chr1	364	18	INTRON	INTRON	ATAD3B	ENSG00000160072.20	ENST00000673477.1:ENST00000308647.8	protein_coding	protein_coding	protein_coding	protein_coding	5	82	2	2.22166	2.8207199999999997	3.41978	0.00735516	1.03805e-4	0.0765982	0.00915599
chr14	50308498	50308598	5889305	0	-	0.31	(0.28,0.32]	chr14	559085	51	INTRON	INTRON	L2HGDH	ENSG00000087299.12	ENST00000261699.8:ENST00000267436.9:ENST00000421284.7:ENST00000555423.5:ENST00000555610.1:ENST00000554191.5:ENST00000556393.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	53	2	2.78004	2.8205850000000003	2.86113	0.0193244	0.0122675	0.108861	0.0969406
chr5	123409948	123410048	2710717	0	-	0.29	(0.28,0.32]	chr5	255032	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	CEP120	ENSG00000168944.17	ENST00000306467.10:ENST00000306481.11:ENST00000328236.10:ENST00000674667.1:ENST00000674620.1:ENST00000675814.1:ENST00000675330.1:ENST00000675104.1:ENST00000675686.1:ENST00000675442.1:ENST00000508442.7:ENST00000674684.1:ENST00000508138.5:ENST00000513565.6:ENST00000675444.1:ENST00000503049.2:ENST00000675409.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	53	2	2.78004	2.8205850000000003	2.86113	0.0193244	0.0122675	0.108861	0.0969406
chr1	160321446	160321545	572094	0	-	0.414141	(0.408,0.44]	chr1	69341	70	INTRON	INTRON	COPA	ENSG00000122218.17	ENST00000241704.8:ENST00000696204.1:ENST00000696203.1:ENST00000696202.1:ENST00000649963.1:ENST00000696208.1:ENST00000696207.1:ENST00000696206.1:ENST00000649676.1:ENST00000368069.7:ENST00000647693.1:ENST00000649787.1:ENST00000650154.1:ENST00000647799.1:ENST00000648805.1:ENST00000647683.1:ENST00000649231.1:ENST00000648501.1:ENST00000696209.1:ENST00000696210.1:ENST00000696211.1:ENST00000647899.1:ENST00000696212.1:ENST00000696214.1:ENST00000696213.1:ENST00000696215.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	44	2	2.27698	2.82038	3.36378	0.0583528	0.0016048	0.167723	0.0367961
chr20	47289786	47289886	7348836	0	-	0.42	(0.408,0.44]	chr20	749313	2	SS5_PROX	SS5_PROX:INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000467200.6:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000468376.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	77	2	2.45003	2.82034	3.19065	0.00990006	3.2984e-4	0.0838372	0.0161352
chr1	65274014	65274114	135733	0	+	0.3	(0.28,0.32]	chr1	15346	87	INTRON	INTRON	DNAJC6	ENSG00000116675.16	ENST00000463018.5:ENST00000494710.6:ENST00000263441.11:ENST00000395325.7:ENST00000483402.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	119	2	1.87915	2.82008	3.76101	0.00813561	6.8623e-4	0.0810802	0.0240041
chr1	52842789	52842883	104906	0	+	0.755319	(0.57,1]	chr1	13716	4	UTR5	UTR5:EXON_MRNA	ZYG11A	ENSG00000203995.10	ENST00000371532.5:ENST00000612017.4:ENST00000371528.2	protein_coding	protein_coding	protein_coding	protein_coding	3	31	2	2.50742	2.81998	3.13254	0.00631173	0.00310655	0.0687526	0.0512344
chr11	62875793	62875891	4799527	0	+	0.571429	(0.57,1]	chr11	444793	38	INTRON	INTRON	SLC3A2	ENSG00000168003.18	ENST00000680729.1:ENST00000680002.1:ENST00000681467.1:ENST00000377890.6:ENST00000538084.2:ENST00000681569.1:ENST00000680725.1:ENST00000377891.6:ENST00000377889.6:ENST00000681215.1:ENST00000535296.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	31	2	2.50742	2.81998	3.13254	0.00631173	0.00310655	0.0687526	0.0512344
chr7	23403467	23403562	3502992	0	-	0.294737	(0.28,0.32]	chr7	326886	5	INTRON	INTRON	IGF2BP3	ENSG00000136231.14	ENST00000258729.8:ENST00000421467.6:ENST00000468263.5:ENST00000479504.5:ENST00000466809.6:ENST00000491719.5:ENST00000465058.5:ENST00000469723.5:ENST00000476938.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	71	2	2.59504	2.8199449999999997	3.04485	0.00894006	0.00582473	0.0799922	0.0687439
chr22	31429578	31429678	7503317	0	+	0.39	(0.378,0.408]	chr22	765635	20	INTRON	INTRON	DRG1	ENSG00000185721.13	ENST00000331457.9:ENST00000469673.1:ENST00000548143.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	59	2	2.21238	2.81994	3.4275	0.0218124	0.00126053	0.11491	0.03295
chr10	26776265	26776365	4583651	0	-	0.39	(0.378,0.408]	chr10	422391	48	INTRON	INTRON	ABI1	ENSG00000136754.18	ENST00000376138.7:ENST00000376166.5:ENST00000376160.5:ENST00000376139.6:ENST00000376142.6:ENST00000359188.8:ENST00000376170.8:ENST00000536334.5:ENST00000490841.6:ENST00000376137.8:ENST00000376140.4:ENST00000346832.10	protein_coding	protein_coding	protein_coding	protein_coding	2	45	2	2.30961	2.819935	3.33026	0.055088	0.00189824	0.165463	0.0402736
chr6	107896951	107897049	3182217	0	-	0.479592	(0.476,0.515]	chr6	296388	27	INTRON	INTRON	SEC63	ENSG00000025796.14	ENST00000369002.9:ENST00000466419.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	77	2	2.14389	2.81988	3.49587	0.00540862	0.00120011	0.066545000000000007	0.0315806
chr7	26177379	26177479	3505989	0	-	0.59	(0.57,1]	chr7	327150	22	INTRON	INTRON	HNRNPA2B1	ENSG00000122566.22	ENST00000679318.1:ENST00000677339.1:ENST00000678501.1:ENST00000676903.1:ENST00000608362.2:ENST00000677631.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	19	174	2	2.47985	2.8198600000000003	3.15987	7.16841e-5	3.87019e-8	0.00761173	7.91875e-5
chr16	18886552	18886649	6457703	0	-	0.484536	(0.476,0.515]	chr16	622855	5	INTRON	INTRON	SMG1	ENSG00000157106.18	ENST00000446231.7:ENST00000565324.5:ENST00000561947.5:ENST00000565224.5:ENST00000532700.6	protein_coding	protein_coding	protein_coding	protein_coding	3	56	2	2.53671	2.819675	3.10264	0.00624027	0.00543163	0.0718843	0.0645052
chr10	21597638	21597738	4405053	0	+	0.46	(0.44,0.476]	chr10	406466	18	INTRON	INTRON	MLLT10	ENSG00000078403.17	ENST00000651097.1:ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000650772.1:ENST00000651298.1:ENST00000495130.5:ENST00000377059.7:ENST00000652258.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	32	2	1.62896	2.81967	4.01038	0.0546679	0.0433743	0.182674	0.148082
chr7	151510722	151510821	3674834	0	-	0.444444	(0.44,0.476]	chr7	341207	122	INTRON	INTRON	RHEB	ENSG00000106615.10	ENST00000262187.10:ENST00000472642.5:ENST00000478470.5:ENST00000496004.5:ENST00000470370.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	32	2	1.62896	2.81967	4.01038	0.0546679	0.0433743	0.182674	0.148082
chr3	198205078	198205177	1600214	0	+	0.424242	(0.408,0.44]	chr3	165898	57	INTRON	INTRON	FAM157A	ENSG00000236438.7	ENST00000634862.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	3	58	2	2.49218	2.81962	3.14706	0.00855168	0.00382411	0.0780217	0.0562562
chr2	88612823	88612923	1174296	0	-	0.42	(0.408,0.44]	chr2	125417	168	INTRON	INTRON	EIF2AK3	ENSG00000172071.15	ENST00000303236.9:ENST00000652736.1:ENST00000652099.1:ENST00000682892.1:ENST00000652423.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	68	2	2.30838	2.819525	3.33067	0.00547703	0.0024459	0.0671198	0.0445752
chr3	14416953	14417052	1369536	0	+	0.565657	(0.515,0.57]	chr3	144318	1	INTRON	INTRON	SLC6A6	ENSG00000131389.18	ENST00000613060.4:ENST00000618278.4:ENST00000610642.4:ENST00000649500.1:ENST00000622186.5:ENST00000621751.4:ENST00000613930.4:ENST00000622176.4:ENST00000615188.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	78	2	2.4745	2.819525	3.16455	0.00279583	3.23741e-4	0.0469265	0.0159645
chr8	102410872	102410972	4012738	0	-	0.42	(0.408,0.44]	chr8	367237	489	INTRON	INTRON	UBR5	ENSG00000104517.13	ENST00000520539.6:ENST00000220959.8:ENST00000521922.5	protein_coding	protein_coding	protein_coding	protein_coding	4	68	2	2.30838	2.819525	3.33067	0.00547703	0.0024459	0.0671198	0.0445752
chr16	3134796	3134892	6433262	0	-	0.489583	(0.476,0.515]	chr16	619155	4	EXON_LNCRNA	EXON_LNCRNA:INTRON	ZNF213-AS1	ENSG00000263072.9	ENST00000674022.1:ENST00000673666.1:ENST00000572691.2:ENST00000664624.1:ENST00000657201.1:ENST00000657996.1:ENST00000576490.2:ENST00000686529.1:ENST00000691772.1:ENST00000685085.1:ENST00000686892.1:ENST00000571963.5:ENST00000573447.2:ENST00000571449.2:ENST00000652946.1:ENST00000658602.1:ENST00000575089.2	lncRNA	lncRNA	lncRNA	lncRNA	5	91	2	2.56291	2.8194600000000003	3.07601	0.00222582	5.95211e-4	0.0421176	0.0221865
chr19	1842621	1842720	7113773	0	-	0.565657	(0.515,0.57]	chr19	714891	114	INTRON	INTRON	REXO1	ENSG00000079313.15	ENST00000170168.9:ENST00000587524.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	49	2	2.38476	2.81944	3.25412	0.0110593	0.00224554	0.0873897	0.0435144
chr5	10356566	10356666	2317675	0	+	0.52	(0.515,0.57]	chr5	224612	15	INTRON	INTRON	MARCHF6	ENSG00000145495.16	ENST00000274140.10:ENST00000449913.6:ENST00000502795.5:ENST00000511802.5:ENST00000503788.5:ENST00000640713.1:ENST00000510872.5:ENST00000507863.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	49	2	2.38476	2.81944	3.25412	0.0110593	0.00224554	0.0873897	0.0435144
chr15	82833634	82833733	6077168	0	+	0.474747	(0.44,0.476]	chr15	578901	2	UTR3	UTR3:EXON_MRNA	WHAMM	ENSG00000156232.7	ENST00000286760.5	protein_coding	protein_coding	protein_coding	protein_coding	7	125	2	2.68583	2.8194350000000004	2.95304	3.91317e-4	3.68938e-4	0.0178272	0.0178091
chr16	349687	349786	6426827	0	-	0.414141	(0.408,0.44]	chr16	617508	22	INTRON	INTRON	AXIN1	ENSG00000103126.15	ENST00000262320.8:ENST00000354866.7:ENST00000481769.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	44	2	2.58179	2.81942	3.05705	0.024638	0.00658331	0.131869	0.0701901
chr16	72509334	72509433	6517750	0	-	0.464646	(0.44,0.476]	chr16	631334	170	INTRON	INTRON	LINC01572	ENSG00000261008.8	ENST00000624829.4:ENST00000561611.2:ENST00000656218.1:ENST00000666555.2:ENST00000664155.1:ENST00000657725.1:ENST00000563770.5:ENST00000668081.1	lncRNA	lncRNA	lncRNA	lncRNA	2	43	2	2.66433	2.81942	2.97451	0.0194358	0.00853825	0.119831	0.0780043
chr6	24667844	24667943	2836076	0	+	0.444444	(0.44,0.476]	chr6	265864	1	INTRON	INTRON	ACOT13	ENSG00000112304.11	ENST00000537591.5:ENST00000230048.5	protein_coding	protein_coding	protein_coding	protein_coding	2	43	2	2.66433	2.81942	2.97451	0.0194358	0.00853825	0.119831	0.0780043
chr8	22441658	22441758	3713325	0	+	0.59	(0.57,1]	chr8	344874	2	SS5_PROX	SS5_PROX:INTRON	PPP3CC	ENSG00000120910.15	ENST00000518852.5:ENST00000240139.10:ENST00000289963.12:ENST00000397775.7:ENST00000522000.1	protein_coding	protein_coding	protein_coding	protein_coding	4	39	2	2.60916	2.8194150000000002	3.02967	0.00471306	0.00119055	0.0631419	0.0315806
chr16	1780713	1780812	6276239	0	+	0.454545	(0.44,0.476]	chr16	599720	46	UTR3	UTR3:EXON_MRNA	EME2	ENSG00000197774.14	ENST00000568449.7:ENST00000561903.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	96	2	2.74833	2.8194	2.89047	0.00955699	4.07917e-4	0.0863913	0.0185763
chr2	38750901	38750980	1099881	0	-	0.734177	(0.57,1]	chr2	118016	2	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	SRSF7	ENSG00000115875.19	ENST00000446327.6:ENST00000313117.11:ENST00000425778.5:ENST00000425941.6:ENST00000409276.5:ENST00000431066.5:ENST00000443213.5:ENST00000415527.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	14	156	2	2.21038	2.8193799999999998	3.42838	0.00192831	1.03517e-8	0.0407155	2.81154e-5
chr16	74585988	74586088	6525121	0	-	0.45	(0.44,0.476]	chr16	631842	228	INTRON	INTRON	GLG1	ENSG00000090863.12	ENST00000205061.9:ENST00000422840.7:ENST00000447066.6:ENST00000562090.5:ENST00000567951.5:ENST00000627032.2:ENST00000565260.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	91	2	2.38636	2.8192899999999996	3.25222	0.0047296	2.39476e-4	0.0600445	0.0136403
chr1	153808788	153808887	556603	0	-	0.414141	(0.408,0.44]	chr1	65923	42	UTR3	UTR3:EXON_MRNA:INTRON	GATAD2B	ENSG00000143614.10	ENST00000637918.1:ENST00000368655.5	protein_coding	protein_coding	protein_coding	protein_coding	9	160	2	2.43888	2.81921	3.19954	0.00103224	1.80439e-5	0.029231300000000002	0.00324329
chrX	24786040	24786140	7632638	0	+	0.35	(0.32,0.35]	chrX	781731	103	INTRON	INTRON	POLA1	ENSG00000101868.13	ENST00000672178.1:ENST00000379068.8:ENST00000379059.7:ENST00000611764.2:ENST00000480125.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	107	2	2.49052	2.819205	3.14789	0.00384313	5.00642e-4	0.0542786	0.020217099999999998
chr1	1563537	1563637	360209	0	-	0.45	(0.44,0.476]	chr1	41848	28	UTR3	UTR3:EXON_MRNA:INTRON	SSU72	ENSG00000160075.12	ENST00000291386.4:ENST00000378725.3:ENST00000359060.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	19	327	2	2.53721	2.819185	3.10116	3.68463e-5	5.16117e-6	0.00485869	0.00169066
chr7	158905283	158905383	3456626	0	+	0.52	(0.515,0.57]	chr7	323188	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	DYNC2I1	ENSG00000126870.16	ENST00000407559.8:ENST00000444851.5:ENST00000467220.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	193	2	2.70893	2.81916	2.92939	5.53211e-5	1.4632e-5	0.00651834	0.00286673
chr1	15517809	15517909	380689	0	-	0.4	(0.378,0.408]	chr1	44644	3	SS5_PROX	SS5_PROX:INTRON	CASP9	ENSG00000132906.18	ENST00000546424.5:ENST00000333868.10:ENST00000348549.9:ENST00000400777.7:ENST00000375890.8:ENST00000474305.2:ENST00000447522.5:ENST00000440484.1:ENST00000546969.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	60	2	2.72993	2.81914	2.90835	0.0188736	0.00133715	0.108861	0.0335955
chr12	56639561	56639643	5335743	0	-	0.5	(0.476,0.515]	chr12	510115	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ATP5F1B	ENSG00000110955.9	ENST00000262030.8:ENST00000548474.2:ENST00000547808.5:ENST00000547250.5:ENST00000551020.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	24	374	2	2.71692	2.8191100000000002	2.9213	7.30508e-5	2.31475e-6	0.00767614	9.52793e-4
chr3	152840650	152840748	1537032	0	+	0.357143	(0.35,0.378]	chr3	160072	39	UTR3	UTR3:EXON_MRNA	P2RY1	ENSG00000169860.7	ENST00000305097.6	protein_coding	protein_coding	protein_coding	protein_coding	3	62	2	2.34278	2.81904	3.2953	0.0129593	0.0031465	0.0991015	0.0500431
chr7	130093894	130093994	3413828	0	+	0.39	(0.378,0.408]	chr7	319098	227	INTRON	INTRON	KLHDC10	ENSG00000128607.14	ENST00000335420.10:ENST00000463413.1:ENST00000468226.1	protein_coding	protein_coding	protein_coding	protein_coding	14	233	2	2.57982	2.818995	3.05817	9.00657e-5	3.94035e-5	0.00844245	0.00508929
chr15	63750684	63750783	6200061	0	-	0.474747	(0.44,0.476]	chr15	591393	5	INTRON	INTRON	HERC1	ENSG00000103657.14	ENST00000443617.7:ENST00000561400.1	protein_coding	protein_coding	protein_coding	protein_coding	18	304	2	2.80254	2.81895	2.83536	4.28766e-5	5.65285e-6	0.00556627	0.00165429
chr3	42224324	42224422	1405797	0	+	0.438776	(0.408,0.44]	chr3	147627	7	UTR3	UTR3:EXON_MRNA	TRAK1	ENSG00000182606.17	ENST00000487159.5:ENST00000672026.1:ENST00000327628.10:ENST00000396175.5	protein_coding	protein_coding	protein_coding	protein_coding	4	68	2	2.26617	2.818895	3.37162	0.00649402	0.00208674	0.0734343	0.0411801
chr7	99492940	99493039	3584041	0	-	0.434343	(0.408,0.44]	chr7	333867	56	INTRON	INTRON	ZNF394	ENSG00000160908.15	ENST00000651364.1:ENST00000462024.1	protein_coding	processed_transcript	protein_coding	processed_transcript	4	68	2	2.26617	2.818895	3.37162	0.00649402	0.00208674	0.0734343	0.0411801
chr17	75145260	75145348	6835987	0	-	0.5	(0.476,0.515]	chr17	675457	1	EXON_LNCRNA	EXON_LNCRNA:INTRON	JPT1:ENSG00000263786	ENSG00000189159.16:ENSG00000263786.1	ENST00000409753.8:ENST00000476258.5:ENST00000482348.5:ENST00000304834.11:ENST00000356033.8:ENST00000470924.5:ENST00000481094.1:ENST00000481647.5:ENST00000580380.1:ENST00000581874.1:ENST00000579554.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA	3	56	2	2.58615	2.818835	3.05152	0.0064848	0.00515536	0.0699952	0.0650394
chr2	38330098	38330198	1098870	0	-	0.3	(0.28,0.32]	chr2	117856	107	INTRON	INTRON	ATL2	ENSG00000119787.14	ENST00000378954.9:ENST00000406122.5:ENST00000405384.6:ENST00000402054.5:ENST00000419554.6:ENST00000651368.1:ENST00000452935.6:ENST00000449130.5:ENST00000443098.5:ENST00000456736.5:ENST00000474535.2:ENST00000472097.1:ENST00000451483.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	54	2	2.32871	2.81882	3.30893	0.0581621	0.00260504	0.167723	0.0470772
chr9	36595947	36596044	4116705	0	+	0.484536	(0.476,0.515]	chr9	375263	8	INTRON	INTRON	MELK	ENSG00000165304.8	ENST00000543751.5:ENST00000536860.5:ENST00000541717.4:ENST00000536329.5:ENST00000627766.2:ENST00000298048.7:ENST00000536987.5:ENST00000545008.5:ENST00000495529.5:ENST00000489766.5:ENST00000625974.2:ENST00000487398.3:ENST00000626154.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	56	2	2.48551	2.818765	3.15202	0.00756632	0.00455841	0.0773151	0.0595107
chr7	74982995	74983095	3336557	0	+	0.51	(0.476,0.515]	chr7	310570	175	INTRON	INTRON	CASTOR2	ENSG00000274070.2	ENST00000616305.2	protein_coding	protein_coding	protein_coding	protein_coding	3	57	2	2.81076	2.818745	2.82673	0.0134403	0.00203568	0.0946278	0.0417667
chr10	45992237	45992336	4430584	0	+	0.474747	(0.44,0.476]	chr10	408492	30	INTRON	INTRON	TIMM23	ENSG00000265354.4	ENST00000580018.4	protein_coding	protein_coding	protein_coding	protein_coding	5	79	2	1.7965	2.8187100000000003	3.84092	0.0205549	2.66933e-4	0.122348	0.0149989
chr7	26208855	26208955	3292438	0	+	0.43	(0.408,0.44]	chr7	305854	3	SS5_PROX	SS5_PROX:INTRON	CBX3	ENSG00000122565.19	ENST00000337620.8:ENST00000396386.7:ENST00000409747.5:ENST00000497498.1:ENST00000462165.2:ENST00000481057.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	105	2	2.23639	2.81851	3.40063	0.00445002	1.06576e-4	0.0592079	0.00874587
chr14	81425507	81425607	5937577	0	-	0.43	(0.408,0.44]	chr14	564238	74	INTRON	INTRON	STON2	ENSG00000140022.14	ENST00000553821.3:ENST00000555447.5:ENST00000649389.1:ENST00000652748.1:ENST00000554710.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	69	2	2.08486	2.818505	3.55215	0.0145898	7.01039e-4	0.0981689	0.0241881
chr1	246150873	246150973	677141	0	-	0.42	(0.408,0.44]	chr1	79721	546	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000391836.3:ENST00000453676.5:ENST00000462422.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	59	2	2.6117	2.818415	3.02513	0.0059965	0.00555224	0.0700606	0.0648867
chr21	17608371	17608471	7433044	0	-	0.36	(0.35,0.378]	chr21	758033	30	INTRON	INTRON	BTG3	ENSG00000154640.15	ENST00000348354.7:ENST00000339775.10	protein_coding	protein_coding	protein_coding	protein_coding	4	77	2	1.87586	2.81841	3.76096	0.0268864	4.8203e-4	0.135275	0.0203411
chr9	125348989	125349089	4199153	0	+	0.38	(0.378,0.408]	chr9	383270	2	SS3_PROX	SS3_PROX:INTRON	GAPVD1	ENSG00000165219.23	ENST00000297933.11:ENST00000470056.5:ENST00000394105.6:ENST00000394083.6:ENST00000495955.5:ENST00000394104.6:ENST00000312123.13:ENST00000474637.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	59	2	2.16303	2.8184	3.47377	0.0252473	0.00103087	0.12011	0.0294094
chr11	119017639	119017734	5046432	0	-	0.378947	(0.378,0.408]	chr11	475836	2	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPS25	ENSG00000118181.11	ENST00000527791.5:ENST00000532567.5:ENST00000527673.2:ENST00000527853.1:ENST00000524864.1:ENST00000528547.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	14	254	2	2.70867	2.8183350000000003	2.928	1.08339e-4	1.23445e-5	0.00933805	0.00261628
chr7	157231619	157231717	3454889	0	+	0.591837	(0.57,1]	chr7	323000	4	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	UBE3C	ENSG00000009335.18	ENST00000348165.10:ENST00000470408.5:ENST00000497368.1:ENST00000494532.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	11	96	2	2.58549	2.81826	3.05103	5.47177e-5	2.42319e-5	0.00606404	0.00404178
chr15	27133485	27133585	5983778	0	+	0.35	(0.32,0.35]	chr15	569164	1063	INTRON	INTRON	GABRG3	ENSG00000182256.13	ENST00000615808.5:ENST00000555083.5	protein_coding	protein_coding	protein_coding	protein_coding	5	90	2	2.05666	2.818225	3.57979	0.00840213	0.00118589	0.0824581	0.0315652
chr20	35627010	35627094	7335379	0	-	0.464286	(0.44,0.476]	chr20	747238	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CPNE1	ENSG00000214078.13	ENST00000352393.8:ENST00000397443.7:ENST00000317677.9:ENST00000415920.5:ENST00000498814.1:ENST00000473373.1:ENST00000483359.5:ENST00000397442.5:ENST00000483495.5:ENST00000401607.6:ENST00000437340.5:ENST00000498056.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	93	2	2.38763	2.8181700000000003	3.24871	0.00394089	3.52936e-4	0.0573041	0.0174637
chr18	56608777	56608877	6979598	0	-	0.54	(0.515,0.57]	chr18	690517	6	UTR3	UTR3:EXON_MRNA:INTRON	TXNL1	ENSG00000091164.13	ENST00000217515.11:ENST00000590954.5:ENST00000587807.5:ENST00000589931.1:ENST00000586262.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	67	2	2.32967	2.818155	3.30664	0.0133671	1.4883e-4	0.0946278	0.0105921
chr11	65276882	65276978	4804868	0	+	0.520833	(0.515,0.57]	chr11	446359	5	INTRON	INTRON	POLA2	ENSG00000014138.9	ENST00000527850.5:ENST00000532469.1:ENST00000265465.8:ENST00000532391.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	41	2	2.23241	2.818145	3.40388	0.0581268	0.00142538	0.188651	0.0340865
chr1	764522	764622	357615	0	-	0.39	(0.378,0.408]	chr1	41183	4	SS5_PROX	SS5_PROX:INTRON	ENSG00000230021:ENSG00000228327	ENSG00000230021.10:ENSG00000228327.4	ENST00000634337.2:ENST00000635509.2:ENST00000506640.2	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene:transcribed_unprocessed_pseudogene	processed_transcript	6	112	2	2.54813	2.81811	3.08809	0.00119772	5.71831e-4	0.0315806	0.0217398
chr2	20050809	20050909	1075725	0	-	0.51	(0.476,0.515]	chr2	114909	94	INTRON	INTRON	LAPTM4A	ENSG00000068697.7	ENST00000175091.5	protein_coding	protein_coding	protein_coding	protein_coding	4	68	2	1.93059	2.81806	3.70553	0.023762	3.44823e-4	0.118822	0.0165103
chr12	121312700	121312799	5436767	0	-	0.393939	(0.378,0.408]	chr12	519847	23	INTRON	INTRON	ANAPC5	ENSG00000089053.13	ENST00000261819.8:ENST00000535641.5:ENST00000541887.5:ENST00000534976.5:ENST00000441917.6:ENST00000539079.5:ENST00000544314.5:ENST00000535482.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	18	306	2	2.46785	2.81793	3.16801	4.96522e-5	1.14826e-5	0.00577648	0.00268333
chr1	108781701	108781780	178605	0	+	0.481013	(0.476,0.515]	chr1	19424	3	INTRON	INTRON	STXBP3	ENSG00000116266.11	ENST00000370008.4	protein_coding	protein_coding	protein_coding	protein_coding	6	86	2	1.77073	2.817875	3.86502	0.0151174	2.2858e-4	0.108513	0.0138641
chr16	88590504	88590603	6418465	0	+	0.373737	(0.35,0.378]	chr16	615804	25	INTRON	INTRON	ZC3H18	ENSG00000158545.16	ENST00000301011.10:ENST00000452588.6:ENST00000569435.5:ENST00000567085.1	protein_coding	protein_coding	protein_coding	protein_coding	4	75	2	2.02424	2.8177849999999998	3.61133	0.0164934	9.14099e-4	0.110301	0.0278396
chr11	9236661	9236761	4908785	0	-	0.47	(0.44,0.476]	chr11	460107	287	INTRON	INTRON	DENND5A	ENSG00000184014.9	ENST00000328194.8:ENST00000681203.1:ENST00000530780.2:ENST00000679999.1:ENST00000680470.1:ENST00000680554.1:ENST00000681425.1:ENST00000679568.1:ENST00000679446.1:ENST00000680294.1:ENST00000680742.1:ENST00000680885.1:ENST00000530044.5:ENST00000526707.5:ENST00000532696.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	125	2	2.72256	2.81771	2.91286	0.00111786	1.07786e-4	0.0306954	0.00878438
chr15	50600981	50601080	6172404	0	-	0.232323	[0,0.28]	chr15	588282	13	INTRON	INTRON	TRPM7	ENSG00000092439.16	ENST00000646667.1:ENST00000560955.5	protein_coding	protein_coding	protein_coding	protein_coding	9	204	2	2.4961700000000002	2.8177000000000003	3.13923	0.00131862	4.23136e-4	0.0331539	0.0184109
chr14	55295343	55295443	5726035	0	+	0.31	(0.28,0.32]	chr14	543454	99	INTRON	INTRON	FBXO34	ENSG00000178974.11	ENST00000681400.1:ENST00000681904.1:ENST00000679934.1:ENST00000681074.1:ENST00000680682.1:ENST00000680658.1:ENST00000313833.5:ENST00000554940.1:ENST00000440021.1:ENST00000555087.1:ENST00000557647.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	87	2	2.5905300000000002	2.81769	3.04485	0.00894006	0.0020216	0.0799922	0.0416117
chr5	132946112	132946212	2725095	0	-	0.38	(0.378,0.408]	chr5	256349	85	INTRON	INTRON	AFF4	ENSG00000072364.13	ENST00000265343.10:ENST00000378595.7:ENST00000491831.5:ENST00000465484.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	59	2	2.78867	2.8176500000000004	2.84663	0.0133954	0.00226991	0.0946278	0.0437013
chr11	9436866	9436962	4729959	0	+	0.385417	(0.378,0.408]	chr11	437936	1	INTRON	INTRON	IPO7	ENSG00000205339.10	ENST00000379719.8	protein_coding	protein_coding	protein_coding	protein_coding	9	166	2	2.61898	2.8176050000000004	3.01623	4.56182e-4	6.09017e-5	0.0196892	0.00644813
chr8	28913855	28913955	3725090	0	+	0.5	(0.476,0.515]	chr8	346251	217	INTRON	INTRON	HMBOX1	ENSG00000147421.18	ENST00000287701.15:ENST00000558662.5:ENST00000519662.5:ENST00000397358.7:ENST00000560599.5:ENST00000523613.5:ENST00000560357.5:ENST00000521516.5:ENST00000519047.5:ENST00000560269.1:ENST00000355231.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	104	2	2.36512	2.81758	3.27004	0.00246559	2.20887e-4	0.0446195	0.0130309
chr7	148735239	148735338	3444054	0	+	0.616162	(0.57,1]	chr7	321178	46	INTRON	INTRON	CUL1	ENSG00000055130.18	ENST00000409469.5:ENST00000662716.1:ENST00000665936.1:ENST00000663044.1:ENST00000602748.5:ENST00000663835.1:ENST00000655324.1:ENST00000662132.1:ENST00000325222.9:ENST00000656001.1:ENST00000666124.1:ENST00000671421.1:ENST00000671397.1:ENST00000662670.1:ENST00000660240.1:ENST00000662975.1:ENST00000660013.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	65	2	2.77701	2.817515	2.85802	3.01883e-4	1.54125e-4	0.0160895	0.0106835
chr2	167914451	167914551	1258947	0	-	0.27	[0,0.28]	chr2	133340	133	INTRON	INTRON	B3GALT1-AS1	ENSG00000235335.3	ENST00000430546.2:ENST00000657553.1:ENST00000670221.1:ENST00000436982.2	lncRNA	lncRNA	lncRNA	lncRNA	6	153	2	2.0524	2.8175	3.5826	0.0137657	9.06684e-5	0.0949306	0.00796627
chr1	220203166	220203263	640128	0	-	0.371134	(0.35,0.378]	chr1	75543	4	INTRON	INTRON	RAB3GAP2	ENSG00000118873.17	ENST00000358951.7:ENST00000687065.1:ENST00000686381.1:ENST00000687647.1:ENST00000692972.1:ENST00000690315.1:ENST00000691862.1:ENST00000691661.1:ENST00000690373.1:ENST00000693602.1:ENST00000692813.1:ENST00000685286.1:ENST00000688035.1:ENST00000685664.1:ENST00000690824.1:ENST00000687394.1:ENST00000690379.1:ENST00000478976.1:ENST00000237724.9:ENST00000689820.1:ENST00000484658.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	84	2	2.36677	2.817405	3.26804	0.0139343	2.47065e-4	0.0957526	0.0139149
chr10	74106339	74106437	4455606	0	+	0.387755	(0.378,0.408]	chr10	411485	6	INTRON	INTRON	VCL	ENSG00000035403.18	ENST00000623461.3:ENST00000372755.7:ENST00000624354.3:ENST00000211998.10:ENST00000472585.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	44	2	2.46373	2.81731	3.17089	0.0382831	0.00357279	0.141795	0.0548435
chr1	17024274	17024374	384335	0	-	0.34	(0.32,0.35]	chr1	45393	2	SS3_PROX	SS3_PROX:INTRON	SDHB	ENSG00000117118.10	ENST00000375499.8:ENST00000485515.5:ENST00000491274.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	66	2	2.30731	2.817305	3.3273	0.0176772	0.00218894	0.10525	0.0435144
chr1	229550822	229550921	653694	0	-	0.343434	(0.32,0.35]	chr1	77488	10	INTRON	INTRON	ABCB10	ENSG00000135776.5	ENST00000344517.5	protein_coding	protein_coding	protein_coding	protein_coding	3	66	2	2.30731	2.817305	3.3273	0.0176772	0.00218894	0.10525	0.0435144
chr5	134209717	134209817	2726528	0	-	0.5	(0.476,0.515]	chr5	256558	32	INTRON	INTRON	PPP2CA	ENSG00000113575.10	ENST00000481195.6:ENST00000522385.1:ENST00000523082.1:ENST00000231504.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	42	2	2.56033	2.817275	3.07422	0.0287634	0.00506023	0.127066	0.0646039
chr2	69926859	69926959	805626	0	+	0.42	(0.408,0.44]	chr2	89920	47	INTRON	INTRON	MXD1	ENSG00000059728.11	ENST00000435990.5:ENST00000540449.5:ENST00000264444.7:ENST00000409442.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	32	2	1.6306	2.817225	4.00385	0.0544158	0.0454568	0.182272	0.149888
chr2	31886933	31887033	1089871	0	-	0.36	(0.35,0.378]	chr2	116867	31	INTRON	INTRON	MEMO1:DPY30	ENSG00000162959.14:ENSG00000162961.14	ENST00000295065.9:ENST00000446765.5:ENST00000404530.6:ENST00000379383.7:ENST00000490459.5:ENST00000426310.6:ENST00000422936.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	46	2	2.47065	2.81718	3.16371	0.0386172	0.00383956	0.142656	0.0562562
chr2	165892577	165892676	1253326	0	-	0.373737	(0.35,0.378]	chr2	132820	17	UTR3	UTR3:EXON_MRNA:INTRON	TTC21B	ENSG00000123607.16	ENST00000680888.1:ENST00000680947.1:ENST00000681083.1:ENST00000681024.1:ENST00000680690.1:ENST00000679676.1:ENST00000679967.1:ENST00000679356.1:ENST00000680327.1:ENST00000681502.1:ENST00000681167.1:ENST00000681483.1:ENST00000680657.1:ENST00000679931.1:ENST00000681952.1:ENST00000652557.1:ENST00000679799.1:ENST00000681819.1:ENST00000243344.8:ENST00000680925.1:ENST00000679840.1:ENST00000680448.1:ENST00000681606.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	46	2	2.47065	2.81718	3.16371	0.0386172	0.00383956	0.142656	0.0562562
chr15	40704592	40704691	6003275	0	+	0.464646	(0.44,0.476]	chr15	571015	23	INTRON	INTRON	RAD51	ENSG00000051180.17	ENST00000527860.5:ENST00000423169.6:ENST00000557850.5:ENST00000267868.8:ENST00000645673.2:ENST00000382643.7:ENST00000525066.5:ENST00000532743.6:ENST00000531277.2:ENST00000533741.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	42	2	2.67572	2.8171600000000003	2.9586	0.0212064	0.00758318	0.113017	0.0773151
chr20	35732326	35732422	7336452	0	-	0.458333	(0.44,0.476]	chr20	747475	3	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	RBM39	ENSG00000131051.24	ENST00000253363.11:ENST00000639702.1:ENST00000656873.1:ENST00000463004.5:ENST00000361162.10:ENST00000461283.5:ENST00000403542.6:ENST00000338163.10:ENST00000528062.7:ENST00000429968.5:ENST00000444878.5:ENST00000665058.1:ENST00000492779.5:ENST00000374038.7:ENST00000412738.5:ENST00000434927.5:ENST00000425184.5:ENST00000481037.5:ENST00000455343.5:ENST00000416108.5:ENST00000426951.5:ENST00000477334.1:ENST00000442447.5:ENST00000449489.5:ENST00000433027.5:ENST00000487604.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	14	236	2	2.79669	2.81712	2.83755	1.23916e-4	1.15345e-5	0.010016	0.00250625
chrX	24212869	24212969	7631646	0	+	0.4	(0.378,0.408]	chrX	781587	16	UTR3	UTR3:EXON_MRNA	ZFX	ENSG00000005889.16	ENST00000539115.5:ENST00000379188.7:ENST00000304543.10:ENST00000379177.5	protein_coding	protein_coding	protein_coding	protein_coding	7	130	2	2.46416	2.8170450000000002	3.16993	0.00175593	7.75659e-5	0.0376652	0.00735438
chr4	78785108	78785208	1981472	0	+	0.47	(0.44,0.476]	chr4	198463	80	INTRON	INTRON	BMP2K	ENSG00000138756.19	ENST00000389010.7:ENST00000502613.3:ENST00000502871.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	194	2	2.73651	2.8170349999999997	2.89756	1.23293e-4	5.04731e-5	0.00999118	0.0058291
chr12	67294338	67294435	5160752	0	+	0.340206	(0.32,0.35]	chr12	488478	12	INTRON	INTRON	CAND1	ENSG00000111530.13	ENST00000545606.6	protein_coding	protein_coding	protein_coding	protein_coding	2	50	2	2.30673	2.817015	3.3273	0.0584434	0.00218894	0.167723	0.0435144
chr17	59906687	59906787	6643898	0	+	0.48	(0.476,0.515]	chr17	648798	124	INTRON	INTRON	RPS6KB1	ENSG00000108443.14	ENST00000393021.7:ENST00000472940.5:ENST00000225577.9:ENST00000477179.5:ENST00000443572.6:ENST00000489824.1:ENST00000406116.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	42	2	2.80729	2.81701	2.82673	0.0134403	0.0126008	0.0980703	0.0946278
chr20	62331871	62331971	7361322	0	-	0.49	(0.476,0.515]	chr20	750960	1	SS5_PROX	SS5_PROX:INTRON	LAMA5	ENSG00000130702.15	ENST00000252999.7	protein_coding	protein_coding	protein_coding	protein_coding	3	57	2	2.05154	2.816985	3.58243	0.0336015	6.18479e-4	0.134145	0.0223951
chr15	87378213	87378313	6253329	0	-	0.4	(0.378,0.408]	chr15	596790	510	INTRON	INTRON	ENSG00000259560	ENSG00000259560.2	ENST00000665121.1:ENST00000656130.1	lncRNA	lncRNA	lncRNA	lncRNA	2	44	2	2.78705	2.81684	2.84663	0.0135539	0.0133954	0.101363	0.0946278
chr2	130166477	130166573	1227715	0	-	0.489583	(0.476,0.515]	chr2	130768	17	INTRON	INTRON	SMPD4	ENSG00000136699.20	ENST00000431183.6:ENST00000454468.5:ENST00000680298.1:ENST00000351288.10:ENST00000433118.5:ENST00000412570.5:ENST00000409031.5:ENST00000439886.5:ENST00000680401.1:ENST00000680679.1:ENST00000680810.1:ENST00000680987.1:ENST00000430682.5:ENST00000435455.6:ENST00000451542.5:ENST00000680196.1:ENST00000473720.5:ENST00000439029.5:ENST00000681660.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	32	2	1.61586	2.816815	4.01777	0.0567093	0.0411361	0.185107	0.1451
chr8	100941414	100941514	4005863	0	-	0.34	(0.32,0.35]	chr8	366668	65	INTRON	INTRON	YWHAZ	ENSG00000164924.18	ENST00000395958.6:ENST00000395957.6:ENST00000457309.2:ENST00000395956.7:ENST00000353245.7:ENST00000521309.5:ENST00000522542.5:ENST00000395953.6:ENST00000395948.6:ENST00000395951.7:ENST00000419477.6:ENST00000521607.5:ENST00000480304.5:ENST00000518736.5:ENST00000517727.5:ENST00000521328.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	101	2	2.18001	2.81681	3.45361	0.00302699	0.00193809	0.0508897	0.0399255
chr2	135064079	135064179	872787	0	+	0.3	(0.28,0.32]	chr2	97740	14	INTRON	INTRON	RAB3GAP1	ENSG00000115839.19	ENST00000539493.3:ENST00000688088.1:ENST00000693554.1:ENST00000690785.1:ENST00000689880.1:ENST00000264158.13:ENST00000690208.1:ENST00000691478.1:ENST00000686114.1:ENST00000685967.1:ENST00000442034.5:ENST00000687199.1:ENST00000691339.1:ENST00000688182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	71	2	2.67153	2.8167	2.96187	0.0114995	0.00436402	0.0889104	0.060356
chrX	123675557	123675657	7878473	0	-	0.49	(0.476,0.515]	chrX	802551	34	INTRON	INTRON	THOC2	ENSG00000125676.20	ENST00000245838.13:ENST00000355725.8:ENST00000491737.5:ENST00000433883.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	191	2	2.52612	2.816655	3.10719	3.76354e-4	1.3208e-5	0.0179911	0.00269911
chr12	131943038	131943138	5250147	0	+	0.39	(0.378,0.408]	chr12	499274	1	SS3_PROX	SS3_PROX:INTRON	PUS1	ENSG00000177192.14	ENST00000443358.6:ENST00000376649.8:ENST00000542167.2:ENST00000535067.5:ENST00000543754.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	84	2	2.46345	2.8165050000000003	3.16956	0.00827342	5.70211e-4	0.0813266	0.0220524
chr9	127565726	127565825	4356018	0	-	0.444444	(0.44,0.476]	chr9	399853	41	INTRON	INTRON	NIBAN2	ENSG00000136830.12	ENST00000373314.7:ENST00000373312.4:ENST00000478917.1:ENST00000468379.1:ENST00000484348.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	57	2	2.42996	2.81643	3.2029	0.0104804	0.00308681	0.0855777	0.0510391
chr1	28509087	28509178	57204	0	+	0.450549	(0.44,0.476]	chr1	7388	3	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	RCC1:SNHG3	ENSG00000180198.17:ENSG00000242125.3	ENST00000398958.6:ENST00000649185.1:ENST00000413987.1:ENST00000427469.5:ENST00000683442.1:ENST00000434290.6:ENST00000373833.10:ENST00000437681.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	134	2198	2	2.52156	2.8164100000000003	3.11126	4.14224e-6	1.27247e-8	0.00147451	3.89042e-5
chr12	110290825	110290924	5226194	0	+	0.484848	(0.476,0.515]	chr12	495234	77	INTRON	INTRON	ATP2A2	ENSG00000174437.18	ENST00000552636.2:ENST00000308664.10:ENST00000539276.7:ENST00000377685.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	45	2	2.13854	2.816325	3.49411	0.0776563	9.23453e-4	0.196285	0.0278392
chr1	244671308	244671408	347893	0	+	0.48	(0.476,0.515]	chr1	40357	149	INTRON	INTRON	DESI2	ENSG00000121644.19	ENST00000263831.11:ENST00000302550.16:ENST00000418162.1	protein_coding	protein_coding	protein_coding	protein_coding	4	69	2	1.7425	2.816195	3.88989	0.0417334	1.35929e-4	0.147007	0.0100405
chr6	147211864	147211964	2988782	0	+	0.42	(0.408,0.44]	chr6	280001	54	INTRON	INTRON	STXBP5	ENSG00000164506.15	ENST00000321680.11:ENST00000367481.7:ENST00000546097.5:ENST00000367480.7	protein_coding	protein_coding	protein_coding	protein_coding	15	263	2	2.72147	2.8161199999999997	2.91077	2.88376e-5	2.87372e-5	0.0044481	0.00425384
chr1	40729669	40729768	82745	0	+	0.494949	(0.476,0.515]	chr1	10736	55	INTRON	INTRON	NFYC	ENSG00000066136.21	ENST00000467203.5:ENST00000424419.6:ENST00000427410.6:ENST00000447388.8:ENST00000425457.6:ENST00000453631.5:ENST00000456393.6:ENST00000372654.5:ENST00000534399.5:ENST00000372653.5:ENST00000372669.8:ENST00000372652.5:ENST00000372651.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	56	2	2.43242	2.816085	3.19975	0.0091895	0.00383299	0.0855292	0.0542786
chr7	158746699	158746799	3688972	0	-	0.49	(0.476,0.515]	chr7	342335	26	INTRON	INTRON	ESYT2	ENSG00000117868.18	ENST00000251527.10:ENST00000275418.13:ENST00000652148.1	protein_coding	protein_coding	protein_coding	protein_coding	3	56	2	2.43242	2.816085	3.19975	0.0091895	0.00383299	0.0855292	0.0542786
chr9	137563340	137563439	4377461	0	-	0.515152	(0.476,0.515]	chr9	403627	62	INTRON	INTRON	DPH7	ENSG00000148399.13	ENST00000277540.7:ENST00000479650.5:ENST00000467243.5:ENST00000497237.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	56	2	2.43242	2.816085	3.19975	0.0091895	0.00383299	0.0855292	0.0542786
chr9	137624750	137624850	4223529	0	+	0.51	(0.476,0.515]	chr9	388152	43	INTRON	INTRON	EHMT1	ENSG00000181090.21	ENST00000462484.5:ENST00000371394.6:ENST00000630754.2:ENST00000460843.6:ENST00000626216.2:ENST00000637593.1:ENST00000629335.2:ENST00000637335.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	56	2	2.43242	2.816085	3.19975	0.0091895	0.00383299	0.0855292	0.0542786
chr1	45613430	45613512	93508	0	+	0.390244	(0.378,0.408]	chr1	12618	2	SS5_PROX	SS5_PROX:INTRON	NASP	ENSG00000132780.17	ENST00000437901.6:ENST00000537798.5:ENST00000437362.6:ENST00000350030.8:ENST00000527359.5:ENST00000453748.5:ENST00000525515.5:ENST00000528238.5:ENST00000372052.8:ENST00000351223.7:ENST00000530073.5:ENST00000481782.1:ENST00000531612.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	91	2	1.67073	2.816035	3.96134	0.0219426	1.71065e-4	0.123836	0.0119955
chr3	31594408	31594508	1392015	0	+	0.5	(0.476,0.515]	chr3	145698	140	INTRON	INTRON	STT3B	ENSG00000163527.10	ENST00000453168.5:ENST00000295770.4:ENST00000423527.5:ENST00000462235.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	91	2	2.59108	2.816025	3.04097	0.00196853	7.0601e-4	0.0402283	0.0241881
chr2	69939275	69939374	805755	0	+	0.434343	(0.408,0.44]	chr2	89939	11	UTR3	UTR3:EXON_MRNA:INTRON	MXD1	ENSG00000059728.11	ENST00000540449.5:ENST00000264444.7:ENST00000465446.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	57	2	2.21857	2.8159	3.41323	0.0209591	0.00129989	0.112046	0.0333764
chr3	42633393	42633486	1406311	0	+	0.322581	(0.32,0.35]	chr3	147692	3	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	NKTR	ENSG00000114857.19	ENST00000468735.6:ENST00000429888.5:ENST00000232978.13:ENST00000465584.5:ENST00000498730.5:ENST00000460807.2:ENST00000508351.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	106	2	2.7634	2.81588	2.86836	0.00250845	8.19858e-4	0.0446195	0.026165
chr17	37122030	37122130	6760126	0	-	0.6	(0.57,1]	chr17	664656	1	SS5_PROX	SS5_PROX:INTRON	ACACA	ENSG00000278540.5	ENST00000616317.5:ENST00000614428.4:ENST00000612895.4:ENST00000619546.4:ENST00000617649.4:ENST00000614482.4:ENST00000613776.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	25	2	2.36411	2.815855	3.2676	0.0408868	0.00176203	0.161534	0.0376652
chr4	518868	518967	1907553	0	+	0.626263	(0.57,1]	chr4	191137	23	INTRON	INTRON	PIGG	ENSG00000174227.16	ENST00000453061.7:ENST00000504187.5:ENST00000310340.9:ENST00000504346.5:ENST00000503111.5:ENST00000383028.8:ENST00000506402.5:ENST00000509768.1:ENST00000506898.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	25	2	2.36411	2.815855	3.2676	0.0408868	0.00176203	0.161534	0.0376652
chr10	125132016	125132116	4714054	0	-	0.44	(0.408,0.44]	chr10	434919	88	INTRON	INTRON	CTBP2	ENSG00000175029.17	ENST00000337195.9:ENST00000411419.6:ENST00000494626.6:ENST00000531469.5:ENST00000460976.5:ENST00000476817.1:ENST00000530884.1:ENST00000530930.1:ENST00000467395.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	57	2	2.26792	2.81585	3.36378	0.0179973	0.0016048	0.106756	0.0367961
chr2	177213818	177213918	925925	0	+	0.32	(0.28,0.32]	chr2	101735	4	SS5_PROX	SS5_PROX:INTRON	HNRNPA3	ENSG00000170144.21	ENST00000392524.6:ENST00000679159.1:ENST00000678111.1:ENST00000678421.1:ENST00000677863.1:ENST00000676681.1:ENST00000676629.1:ENST00000677337.1:ENST00000676488.1:ENST00000677043.1:ENST00000676874.1:ENST00000676762.1:ENST00000411529.6:ENST00000676736.1:ENST00000483137.2:ENST00000677508.1:ENST00000435711.5:ENST00000679328.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	169	2	2.72123	2.8157949999999996	2.91036	0.00112621	3.49042e-4	0.0308424	0.017404
chr11	28117971	28118070	4752250	0	+	0.363636	(0.35,0.378]	chr11	440072	40	INTRON	INTRON	METTL15	ENSG00000169519.21	ENST00000406787.7:ENST00000403099.5:ENST00000451385.6:ENST00000407364.8:ENST00000532947.2:ENST00000634627.1:ENST00000634973.1:ENST00000303459.10:ENST00000634721.1:ENST00000634762.1:ENST00000437814.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	179	2	1.98201	2.81576	3.64951	0.00451871	4.36071e-6	0.0595107	0.00140234
chr17	82583134	82583234	6693246	0	+	0.49	(0.476,0.515]	chr17	654657	2	SS5_PROX	SS5_PROX:INTRON	FOXK2	ENSG00000141568.21	ENST00000473637.6:ENST00000335255.10:ENST00000526383.2:ENST00000571160.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	44	2	2.47949	2.8157550000000002	3.15202	0.0326974	0.00455841	0.145164	0.0595107
chr18	13037701	13037801	6877045	0	+	0.43	(0.408,0.44]	chr18	681408	4	SS5_PROX	SS5_PROX:INTRON	CEP192	ENSG00000101639.19	ENST00000325971.12:ENST00000506447.5:ENST00000589596.5:ENST00000513432.5:ENST00000511820.6:ENST00000510237.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	79	2	1.91269	2.815715	3.71874	0.0153219	3.17998e-4	0.100173	0.0159645
chr17	42504256	42504354	6611766	0	+	0.377551	(0.35,0.378]	chr17	644172	10	INTRON	INTRON	ATP6V0A1	ENSG00000033627.17	ENST00000393829.6:ENST00000343619.9:ENST00000537728.5:ENST00000264649.10:ENST00000585525.5:ENST00000544137.5:ENST00000587510.5:ENST00000586201.5:ENST00000588138.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	99	2	2.77625	2.8157050000000003	2.85516	0.00239229	7.04769e-4	0.0440612	0.0241881
chr12	11015040	11015140	5267936	0	-	0.47	(0.44,0.476]	chr12	502221	84	INTRON	INTRON	ENSG00000275778:PRH1	ENSG00000275778.2:ENSG00000231887.8	ENST00000536668.2:ENST00000535024.6:ENST00000539853.5:ENST00000541977.5:ENST00000536086.2:ENST00000534923.1:ENST00000541456.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	42	2	2.60774	2.8157	3.02366	0.0255874	0.00603307	0.120269	0.0700813
chr13	113230895	113230992	5548506	0	+	0.474227	(0.44,0.476]	chr13	530143	8	INTRON	INTRON	CUL4A	ENSG00000139842.15	ENST00000375441.7:ENST00000326335.8:ENST00000451881.5:ENST00000617546.4:ENST00000375440.9:ENST00000498562.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	42	2	2.60774	2.8157	3.02366	0.0255874	0.00603307	0.120269	0.0700813
chr16	48316267	48316367	6346476	0	+	0.47	(0.44,0.476]	chr16	609123	126	INTRON	INTRON	LONP2	ENSG00000102910.14	ENST00000285737.9:ENST00000535754.5:ENST00000416006.7:ENST00000566755.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	42	2	2.60774	2.8157	3.02366	0.0255874	0.00603307	0.120269	0.0700813
chr17	73217615	73217714	6835069	0	-	0.464646	(0.44,0.476]	chr17	675246	45	INTRON	INTRON	FAM104A	ENSG00000133193.13	ENST00000403627.7:ENST00000405159.8:ENST00000583178.5:ENST00000580032.1:ENST00000581110.1:ENST00000579872.1:ENST00000583024.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	42	2	2.60774	2.8157	3.02366	0.0255874	0.00603307	0.120269	0.0700813
chr14	74889349	74889445	5789853	0	+	0.385417	(0.378,0.408]	chr14	548573	1	EXON_MRNA	EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DLST	ENSG00000119689.15	ENST00000556460.5:ENST00000555492.5:ENST00000557012.5:ENST00000554612.5:ENST00000334220.9:ENST00000238671.11:ENST00000556582.5:ENST00000555071.5:ENST00000555190.5:ENST00000555459.5:ENST00000555089.5:ENST00000626051.1:ENST00000554806.5:ENST00000555988.1:ENST00000550473.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	79	2	2.80155	2.8156100000000004	2.82967	0.00278307	0.00189968	0.0469265	0.0402736
chr12	1780450	1780543	5065070	0	+	0.462366	(0.44,0.476]	chr12	477896	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ADIPOR2	ENSG00000006831.10	ENST00000357103.5:ENST00000535774.1:ENST00000537190.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	42	2	2.74063	2.81555	2.89047	0.0176095	0.00955699	0.105143	0.0863913
chr18	3596078	3596178	6867367	0	+	0.47	(0.44,0.476]	chr18	680384	1	SS3_PROX	SS3_PROX:INTRON	DLGAP1-AS1	ENSG00000177337.9	ENST00000577995.6:ENST00000573355.3:ENST00000575606.5:ENST00000317114.3:ENST00000576606.6:ENST00000574411.5:ENST00000669270.1	lncRNA	lncRNA	lncRNA	lncRNA	2	42	2	2.74063	2.81555	2.89047	0.0176095	0.00955699	0.105143	0.0863913
chr1	207780634	207780734	305197	0	+	0.41	(0.408,0.44]	chr1	35129	45	INTRON	INTRON	CD46	ENSG00000117335.21	ENST00000695779.1:ENST00000695777.1:ENST00000695778.1:ENST00000496723.2:ENST00000695782.1:ENST00000695781.1:ENST00000695780.1:ENST00000636114.2:ENST00000367042.6:ENST00000322875.8:ENST00000322918.9:ENST00000354848.5:ENST00000357714.5:ENST00000358170.6:ENST00000367041.5:ENST00000367047.5:ENST00000695783.1:ENST00000695784.1:ENST00000469535.5:ENST00000360212.6:ENST00000480003.5:ENST00000695786.1:ENST00000490278.2:ENST00000488596.5:ENST00000471987.1:ENST00000462968.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	76	2	2.68622	2.815515	2.94481	0.00418848	0.00110214	0.0572071	0.03038
chr1	27409391	27409491	405948	0	-	0.34	(0.32,0.35]	chr1	48945	3	SS5_PROX	SS5_PROX:INTRON	WASF2	ENSG00000158195.11	ENST00000618852.5:ENST00000536657.1	protein_coding	protein_coding	protein_coding	protein_coding	9	187	2	2.34177	2.815485	3.2892	0.00213698	1.51923e-5	0.0417866	0.00293131
chr2	112484227	112484326	851002	0	+	0.40404	(0.378,0.408]	chr2	95377	4	INTRON	INTRON	TTL	ENSG00000114999.8	ENST00000233336.7	protein_coding	protein_coding	protein_coding	protein_coding	3	60	2	2.51733	2.8154649999999997	3.1136	0.00808319	0.00443339	0.0766625	0.061054
chr4	39715658	39715758	1953167	0	+	0.31	(0.28,0.32]	chr4	195630	169	INTRON	INTRON	UBE2K	ENSG00000078140.14	ENST00000510934.5:ENST00000261427.10:ENST00000438068.6:ENST00000513231.5:ENST00000503368.5:ENST00000445950.2:ENST00000510719.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	137	2	1.77475	2.8153699999999997	3.85599	0.00755719	4.63052e-4	0.0773151	0.0198709
chr3	155877762	155877861	1537198	0	+	0.464646	(0.44,0.476]	chr3	160082	65	INTRON	INTRON	GMPS	ENSG00000163655.16	ENST00000496455.7:ENST00000295920.7	protein_coding	protein_coding	protein_coding	protein_coding	5	91	2	2.28847	2.8152799999999996	3.34209	0.00692113	1.47653e-4	0.0718189	0.0105526
chr17	82270682	82270781	6852807	0	-	0.525253	(0.515,0.57]	chr17	679167	33	INTRON	INTRON	CSNK1D	ENSG00000141551.15	ENST00000398519.9:ENST00000314028.11:ENST00000581241.5:ENST00000392334.6:ENST00000403276.7:ENST00000582844.5:ENST00000580446.1:ENST00000581660.5:ENST00000578194.5:ENST00000579316.5:ENST00000584472.5:ENST00000585026.1:ENST00000579308.1:ENST00000581655.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	147	2	2.62223	2.8152049999999997	3.00818	1.14338e-4	6.65395e-5	0.00914744	0.00718589
chr22	21789406	21789505	7560600	0	-	0.383838	(0.378,0.408]	chr22	773370	2	INTRON	INTRON	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	14	254	2	2.50179	2.81518	3.12857	3.38004e-4	3.00597e-6	0.0170719	0.00111586
chr14	90801999	90802099	5951602	0	-	0.43	(0.408,0.44]	chr14	565050	153	INTRON	INTRON	TTC7B	ENSG00000165914.15	ENST00000328459.11:ENST00000553948.1	protein_coding	protein_coding	protein_coding	protein_coding	4	69	2	1.83501	2.815175	3.79534	0.0323448	2.17043e-4	0.133003	0.0129235
chr1	44756637	44756737	92487	0	+	0.52	(0.515,0.57]	chr1	12298	4	SS5_PROX	SS5_PROX:INTRON	KIF2C	ENSG00000142945.13	ENST00000452259.5:ENST00000493027.5:ENST00000372224.9:ENST00000372217.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	49	2	2.15051	2.8150500000000003	3.47959	0.0238113	8.38022e-4	0.118889	0.0263691
chr1	50749567	50749667	450145	0	-	0.4	(0.378,0.408]	chr1	54249	44	INTRON	INTRON	FAF1	ENSG00000185104.21	ENST00000396153.7:ENST00000487898.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	59	2	2.35103	2.8150500000000003	3.27907	0.014158	0.0023379	0.0959618	0.0442989
chr22	49420578	49420676	7600281	0	-	0.387755	(0.378,0.408]	chr22	778546	33	INTRON	INTRON	MIR3667HG	ENSG00000188511.13	ENST00000414287.5:ENST00000498829.1	lncRNA	lncRNA	lncRNA	lncRNA	3	59	2	2.35103	2.8150500000000003	3.27907	0.014158	0.0023379	0.0959618	0.0442989
chr16	89782458	89782558	6544458	0	-	0.4	(0.378,0.408]	chr16	634530	2	SS5_PROX	SS5_PROX:INTRON	FANCA	ENSG00000187741.16	ENST00000561667.2:ENST00000389301.8:ENST00000568369.6:ENST00000564475.6:ENST00000696275.1:ENST00000696287.1:ENST00000696286.1:ENST00000696274.1:ENST00000696291.1:ENST00000696276.1:ENST00000567205.2:ENST00000567284.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	114	2	2.78373	2.814985	2.84624	9.21936e-4	4.63696e-4	0.0278396	0.0195302
chr9	133270863	133270963	4369988	0	-	0.25	[0,0.28]	chr9	402068	83	INTRON	INTRON	ABO	ENSG00000175164.16	ENST00000679909.1:ENST00000453660.4:ENST00000647353.1:ENST00000611156.4:ENST00000538324.2:ENST00000651471.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	213	2	1.91645	2.81486	3.71327	0.00490539	1.17493e-4	0.0643405	0.0098177
chr15	64525951	64526051	6044743	0	+	0.5	(0.476,0.515]	chr15	575696	230	INTRON	INTRON	ZNF609	ENSG00000180357.10	ENST00000326648.5:ENST00000558680.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	90	2	2.69104	2.8148150000000003	2.93859	0.00143107	9.94264e-4	0.0340925	0.0290397
chr9	133271262	133271362	4369992	0	-	0.47	(0.44,0.476]	chr9	402068	87	INTRON	INTRON	ABO	ENSG00000175164.16	ENST00000679909.1:ENST00000453660.4:ENST00000647353.1:ENST00000611156.4:ENST00000538324.2:ENST00000651471.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	76	2	2.78129	2.8146449999999996	2.848	0.00229634	0.00215274	0.0439319	0.0417866
chr14	30585140	30585238	5674651	0	+	0.306122	(0.28,0.32]	chr14	540518	37	INTRON	INTRON	G2E3	ENSG00000092140.16	ENST00000206595.11:ENST00000438909.6:ENST00000544007.5:ENST00000550944.5:ENST00000552488.1:ENST00000648008.1:ENST00000553504.5:ENST00000554714.5:ENST00000547532.5:ENST00000555429.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	53	2	2.80157	2.81463	2.82769	0.0169391	0.0147132	0.106558	0.103888
chr16	75007169	75007269	6389500	0	+	0.53	(0.515,0.57]	chr16	614482	44	INTRON	INTRON	ZNRF1	ENSG00000186187.12	ENST00000335325.9:ENST00000320619.10:ENST00000567962.5:ENST00000566250.5:ENST00000564320.1:ENST00000568511.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	62	2	1.7492	2.814615	3.88003	0.0382504	1.52864e-4	0.15832	0.0112857
chr16	2259535	2259633	6431606	0	-	0.397959	(0.378,0.408]	chr16	618787	9	INTRON	INTRON	RNPS1	ENSG00000205937.12	ENST00000397086.6:ENST00000566458.5:ENST00000320225.10:ENST00000566397.5:ENST00000565678.5:ENST00000561718.5:ENST00000568631.5:ENST00000569598.6:ENST00000301730.12:ENST00000567147.5:ENST00000565870.5:ENST00000561518.5:ENST00000564311.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	95	2	2.70141	2.8145249999999997	2.92764	0.00411614	3.01906e-4	0.0564981	0.0155054
chr9	91294520	91294620	4280546	0	-	0.4	(0.378,0.408]	chr9	393785	732	INTRON	INTRON	AUH	ENSG00000148090.12	ENST00000303617.5:ENST00000375731.9	protein_coding	protein_coding	protein_coding	protein_coding	5	95	2	2.70141	2.8145249999999997	2.92764	0.00411614	3.01906e-4	0.0564981	0.0155054
chr1	35943298	35943398	71266	0	+	0.47	(0.44,0.476]	chr1	9132	115	INTRON	INTRON	AGO3	ENSG00000126070.20	ENST00000324350.9:ENST00000397828.3:ENST00000634486.1:ENST00000373191.9:ENST00000246314.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	77	2	2.04674	2.814465	3.58219	0.00803423	8.57842e-4	0.0803474	0.0267428
chr1	230127626	230127726	334683	0	+	0.48	(0.476,0.515]	chr1	38930	357	INTRON	INTRON	GALNT2	ENSG00000143641.10	ENST00000494106.1:ENST00000366672.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	58	2	2.13304	2.8144549999999997	3.49587	0.024866	0.00120011	0.132101	0.0315806
chr16	23862531	23862631	6324024	0	+	0.33	(0.32,0.35]	chr16	605693	248	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000498058.1:ENST00000645517.1:ENST00000498739.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	109	2	1.90543	2.814425	3.72342	0.00676396	6.58762e-4	0.0741642	0.0234233
chr5	65560666	65560765	2634270	0	-	0.323232	(0.32,0.35]	chr5	250195	54	INTRON	INTRON	CENPK	ENSG00000123219.13	ENST00000514814.5:ENST00000396679.6:ENST00000508421.5:ENST00000510693.5:ENST00000506282.6:ENST00000505960.5:ENST00000515497.5:ENST00000515873.5:ENST00000510768.5:ENST00000510354.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	49	2	2.78073	2.814425	2.84812	0.01481	0.0147575	0.106702	0.0983813
chr1	1389891	1389973	359811	0	-	0.512195	(0.476,0.515]	chr1	41769	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CCNL2	ENSG00000221978.13	ENST00000400809.8:ENST00000480479.5:ENST00000482621.5:ENST00000496007.5:ENST00000482365.5:ENST00000481223.6:ENST00000418865.6:ENST00000505849.5:ENST00000488340.5:ENST00000492998.5:ENST00000469113.5:ENST00000480646.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	13	226	2	2.3725	2.814405	3.25631	5.6462e-4	2.13407e-6	0.021937	9.07669e-4
chr5	54045806	54045906	2618262	0	-	0.37	(0.35,0.378]	chr5	248835	1338	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	74	2	2.11531	2.814395	3.51348	0.0119629	0.00136294	0.0962115	0.0336321
chr19	19473414	19473514	7036030	0	+	0.41	(0.408,0.44]	chr19	701470	3	INTRON	INTRON	GATAD2A	ENSG00000167491.18	ENST00000360315.7:ENST00000609040.5:ENST00000417582.6:ENST00000683918.1:ENST00000432704.5:ENST00000404158.5:ENST00000429242.7:ENST00000358713.7:ENST00000444839.1:ENST00000418032.3:ENST00000473184.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	77	2	2.73941	2.81427	2.88913	0.002744	0.00185044	0.0484022	0.0388609
chr9	24650	24750	4226177	0	-	0.59	(0.57,1]	chr9	388480	4	SS5_PROX	SS5_PROX:INTRON	WASHC1	ENSG00000181404.18	ENST00000442898.5:ENST00000696149.1:ENST00000696150.1:ENST00000696151.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	31	2	2.28103	2.81427	3.34751	0.0151554	0.00122677	0.108535	0.0320791
chr17	44034722	44034821	6778069	0	-	0.373737	(0.35,0.378]	chr17	668102	5	UTR3	UTR3:EXON_MRNA	LSM12	ENSG00000161654.10	ENST00000591247.6:ENST00000293406.8	protein_coding	protein_coding	protein_coding	protein_coding	3	61	2	2.54421	2.81426	3.08431	0.0065853	0.00630238	0.0722266	0.0701901
chrY	11195774	11195874	7929970	0	-	0.35	(0.32,0.35]	chrY	807176	323	INTRON	INTRON	ENSG00000278212	ENSG00000278212.3	ENST00000652671.1:ENST00000651211.2:ENST00000687423.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	4	80	2	2.1298	2.8142449999999997	3.49869	0.0141189	0.00108004	0.0959618	0.0300133
chr7	119721149	119721249	3628549	0	-	0.28	[0,0.28]	chr7	337319	158	INTRON	INTRON	LINC02476	ENSG00000225546.6	ENST00000660268.1:ENST00000431071.5	lncRNA	lncRNA	lncRNA	lncRNA	5	134	2	2.64877	2.8142300000000002	2.97969	0.00757778	4.25217e-4	0.0749063	0.018441
chr17	59841083	59841180	6643746	0	+	0.371134	(0.35,0.378]	chr17	648787	13	UTR3	UTR3:EXON_MRNA	VMP1	ENSG00000062716.13	ENST00000262291.9:ENST00000592790.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	148	2	2.25637	2.81416	3.37195	8.28597e-4	2.42271e-4	0.0263691	0.014329100000000001
chr7	151239918	151240018	3449054	0	+	0.44	(0.408,0.44]	chr7	322314	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CHPF2	ENSG00000033100.17	ENST00000691224.1:ENST00000685322.1:ENST00000689322.1	protein_coding	retained_intron	protein_coding	retained_intron:nonsense_mediated_decay	4	76	2	2.57295	2.81414	3.05533	0.00640423	6.50769e-4	0.0694534	0.0231135
chr19	10329959	10330059	7135474	0	-	0.55	(0.515,0.57]	chr19	719367	1	SS5_PROX	SS5_PROX:INTRON	RAVER1	ENSG00000161847.14	ENST00000617231.5:ENST00000592208.5:ENST00000611074.4:ENST00000615032.4:ENST00000591969.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	61	2	1.81744	2.81412	3.8108	0.031028	2.17298e-4	0.143457	0.0135077
chr17	45049364	45049464	6782085	0	-	0.43	(0.408,0.44]	chr17	669013	43	INTRON	INTRON	DCAKD	ENSG00000172992.13	ENST00000342350.10:ENST00000452796.7:ENST00000651974.1:ENST00000310604.9:ENST00000688601.1:ENST00000614054.5:ENST00000687739.1:ENST00000688897.1:ENST00000687955.1:ENST00000688577.1:ENST00000588499.6:ENST00000684999.1:ENST00000692180.1:ENST00000693065.1:ENST00000691739.1:ENST00000687525.1:ENST00000686754.1:ENST00000687463.1:ENST00000685712.1:ENST00000592902.6:ENST00000685986.1:ENST00000692907.1:ENST00000689764.1:ENST00000687414.1:ENST00000693328.1:ENST00000688568.1:ENST00000588295.2:ENST00000593094.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	76	2	2.72208	2.8140400000000003	2.906	0.00364449	0.00131817	0.0535094	0.0333932
chr1	10483290	10483390	23059	0	+	0.45	(0.44,0.476]	chr1	2497	79	INTRON	INTRON	PEX14	ENSG00000142655.13	ENST00000472851.1:ENST00000356607.9:ENST00000491661.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	56	2	2.54944	2.81403	3.07862	0.0060153	0.00591346	0.0694038	0.0674604
chr11	74239955	74240054	4827220	0	+	0.444444	(0.44,0.476]	chr11	450499	3	INTRON	INTRON	PPME1	ENSG00000214517.10	ENST00000328257.13:ENST00000398427.6:ENST00000543525.3:ENST00000535205.5:ENST00000541340.5:ENST00000538501.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	72	2	2.80275	2.81403	2.82531	0.0146513	5.00634e-4	0.0982604	0.020217099999999998
chr16	15990040	15990140	6308163	0	+	0.47	(0.44,0.476]	chr16	603510	399	INTRON	INTRON	ABCC1	ENSG00000103222.20	ENST00000574224.2:ENST00000678422.1:ENST00000677164.1:ENST00000399408.7:ENST00000572882.3:ENST00000399410.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	56	2	2.54944	2.81403	3.07862	0.0060153	0.00591346	0.0694038	0.0674604
chr3	11803314	11803414	1615638	0	-	0.45	(0.44,0.476]	chr3	166756	124	INTRON	INTRON	TAMM41	ENSG00000144559.11	ENST00000273037.9:ENST00000455809.6:ENST00000498127.5:ENST00000457498.5:ENST00000486090.1:ENST00000414736.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	56	2	2.54944	2.81403	3.07862	0.0060153	0.00591346	0.0694038	0.0674604
chr7	111197412	111197512	3620456	0	-	0.43	(0.408,0.44]	chr7	337093	2335	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	68	2	2.17784	2.8140150000000004	3.45019	0.00916282	0.00152664	0.0855292	0.0353936
chr6	85627102	85627201	3151288	0	-	0.535354	(0.515,0.57]	chr6	293889	26	INTRON	INTRON	ENSG00000271793:SYNCRIP	ENSG00000271793.2:ENSG00000135316.19	ENST00000682083.1:ENST00000683074.1:ENST00000681965.1:ENST00000682504.1:ENST00000682106.1:ENST00000683364.1:ENST00000683436.1:ENST00000684220.1:ENST00000683909.1:ENST00000684462.1:ENST00000616122.5:ENST00000678528.1:ENST00000676637.1:ENST00000677771.1:ENST00000355238.11:ENST00000678878.1:ENST00000677481.1:ENST00000677646.1:ENST00000676630.1:ENST00000678618.1:ENST00000676542.1:ENST00000677059.1:ENST00000444272.2:ENST00000678899.1:ENST00000369622.8:ENST00000678355.1:ENST00000676688.1:ENST00000677514.1:ENST00000678816.1:ENST00000678930.1:ENST00000678589.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	100	2	2.32131	2.813975	3.30664	0.00139342	1.4883e-4	0.0340865	0.0105921
chr22	19396286	19396386	7554065	0	-	0.5	(0.476,0.515]	chr22	772281	1	SS5_PROX	SS5_PROX:INTRON	HIRA:C22orf39	ENSG00000100084.14:ENSG00000242259.9	ENST00000263208.5:ENST00000340170.8:ENST00000509549.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	132	2	2.62645	2.8139450000000004	3.00144	0.00135678	1.00767e-4	0.0339121	0.00906101
chr19	35002321	35002421	7054057	0	+	0.47	(0.44,0.476]	chr19	703703	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	GRAMD1A	ENSG00000089351.15	ENST00000599564.5:ENST00000594597.5:ENST00000317991.10:ENST00000600231.5:ENST00000680623.1:ENST00000603669.5:ENST00000411896.6:ENST00000424536.2:ENST00000598073.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	119	2	2.4068	2.81389	3.22098	0.00117196	2.82213e-4	0.0312564	0.0149966
chr11	9286454	9286521	4909145	0	-	0.283582	(0.28,0.32]	chr11	460134	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	TMEM41B	ENSG00000166471.11	ENST00000524543.5:ENST00000528080.6:ENST00000299596.8:ENST00000611268.4:ENST00000533867.1:ENST00000527813.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	18	281	2	2.16862	2.81387	3.45912	3.08153e-4	2.41624e-4	0.0157185	0.0143056
chr1	109419460	109419560	521242	0	-	0.52	(0.515,0.57]	chr1	61255	37	INTRON	INTRON	PSMA5	ENSG00000143106.13	ENST00000271308.9:ENST00000490870.5:ENST00000538610.5:ENST00000484563.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	37	2	2.43589	2.813835	3.19178	0.0370871	0.00289534	0.139194	0.0494641
chr7	878727	878827	3269130	0	+	0.56	(0.515,0.57]	chr7	303673	4	SS5_PROX	SS5_PROX:INTRON	SUN1:GET4	ENSG00000164828.18:ENSG00000239857.7	ENST00000457861.1:ENST00000265857.8:ENST00000412734.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	37	2	2.43589	2.813835	3.19178	0.0370871	0.00289534	0.139194	0.0494641
chr18	2725951	2726051	6865593	0	+	0.34	(0.32,0.35]	chr18	680057	1	SS3_PROX	SS3_PROX:INTRON	SMCHD1	ENSG00000101596.17	ENST00000320876.11:ENST00000688342.1:ENST00000693213.1:ENST00000577880.5:ENST00000584897.5:ENST00000583441.2:ENST00000690757.1:ENST00000581383.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	165	2	2.57937	2.81373	3.04809	0.00120984	1.55092e-4	0.0317954	0.0106835
chr1	6598247	6598346	368203	0	-	0.494949	(0.476,0.515]	chr1	43253	23	INTRON	INTRON	KLHL21	ENSG00000162413.17	ENST00000377663.3:ENST00000377658.8:ENST00000467612.5:ENST00000496707.5:ENST00000463043.1	protein_coding	protein_coding	protein_coding	protein_coding	4	75	2	2.73564	2.813645	2.89165	0.00333144	0.00142068	0.0512081	0.034662
chr1	32036309	32036409	62871	0	+	0.5	(0.476,0.515]	chr1	7957	26	INTRON	INTRON	KHDRBS1	ENSG00000121774.18	ENST00000327300.12:ENST00000307714.12:ENST00000492989.1:ENST00000484270.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	29	2	1.79693	2.813555	3.83018	0.0649782	0.0423385	0.179417	0.161744
chr1	246650629	246650729	350837	0	+	0.26	[0,0.28]	chr1	40540	22	INTRON	INTRON	CNST	ENSG00000162852.14	ENST00000366513.9	protein_coding	protein_coding	protein_coding	protein_coding	3	83	2	2.48772	2.81349	3.13926	0.0125761	0.00563224	0.0926667	0.0678837
chr16	2771303	2771357	6280028	0	+	0.388889	(0.378,0.408]	chr16	600821	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SRRM2	ENSG00000167978.17	ENST00000301740.13:ENST00000630499.2:ENST00000574331.5:ENST00000573692.1:ENST00000570539.1:ENST00000573583.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	114	2	1.95083	2.81346	3.67609	0.00272585	6.32264e-4	0.0482154	0.0231174
chr5	179718474	179718573	2560899	0	+	0.535354	(0.515,0.57]	chr5	244930	18	INTRON	INTRON	CANX	ENSG00000127022.16	ENST00000681674.1:ENST00000681712.1:ENST00000681903.1:ENST00000680406.1:ENST00000502296.6:ENST00000504734.5:ENST00000452673.6:ENST00000679719.1:ENST00000679523.1:ENST00000679395.1:ENST00000681504.1:ENST00000679642.1:ENST00000681894.1:ENST00000680504.1:ENST00000681265.1:ENST00000680894.1:ENST00000680812.1:ENST00000680614.1:ENST00000680985.1:ENST00000680837.1:ENST00000680827.1:ENST00000681576.1:ENST00000680984.1:ENST00000680042.1:ENST00000681762.1:ENST00000681476.1:ENST00000681072.1:ENST00000247461.9:ENST00000513246.6:ENST00000680618.1:ENST00000502673.6:ENST00000680092.1:ENST00000506654.6:ENST00000514032.5:ENST00000681733.1:ENST00000679471.1:ENST00000679527.1:ENST00000680006.1:ENST00000681398.1:ENST00000681431.1:ENST00000680013.1:ENST00000681076.1:ENST00000681168.1:ENST00000509563.2:ENST00000681342.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	67	2	1.82142	2.81331	3.8052	0.0191173	1.67082e-4	0.108861	0.0111796
chr1	28927965	28928065	59090	0	+	0.47	(0.44,0.476]	chr1	7621	128	INTRON	INTRON	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000647918.1:ENST00000646800.1:ENST00000644342.1:ENST00000646189.1:ENST00000482464.6:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000646260.1:ENST00000373798.5:ENST00000644600.1:ENST00000649674.1:ENST00000643173.1:ENST00000343067.9:ENST00000644780.1:ENST00000650265.1:ENST00000648181.1:ENST00000643604.1:ENST00000648891.1:ENST00000373797.2:ENST00000349460.9:ENST00000645184.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	56	2	2.59888	2.813195	3.02751	0.00715968	0.00487719	0.0723634	0.0640618
chr1	155513528	155513628	562399	0	-	0.46	(0.44,0.476]	chr1	67101	307	INTRON	INTRON	ASH1L	ENSG00000116539.14	ENST00000676814.1:ENST00000392403.8:ENST00000368346.7:ENST00000677213.1:ENST00000678117.1:ENST00000679097.1:ENST00000679333.1:ENST00000677042.1:ENST00000678699.1:ENST00000677825.1:ENST00000679133.1:ENST00000548830.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	56	2	2.59888	2.813195	3.02751	0.00715968	0.00487719	0.0723634	0.0640618
chr1	207068709	207068809	303004	0	+	0.46	(0.44,0.476]	chr1	34807	4	SS5_PROX	SS5_PROX:INTRON	PFKFB2	ENSG00000123836.15	ENST00000411990.6:ENST00000367080.8:ENST00000367079.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	56	2	2.59888	2.813195	3.02751	0.00715968	0.00487719	0.0723634	0.0640618
chr16	70423472	70423572	6511309	0	-	0.45	(0.44,0.476]	chr16	630693	5	INTRON	INTRON	ST3GAL2	ENSG00000157350.13	ENST00000342907.3:ENST00000566097.1:ENST00000567586.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	56	2	2.59888	2.813195	3.02751	0.00715968	0.00487719	0.0723634	0.0640618
chr1	52843972	52844072	104918	0	+	0.52	(0.515,0.57]	chr1	13720	6	INTRON	INTRON	ZYG11A	ENSG00000203995.10	ENST00000371532.5:ENST00000612017.4:ENST00000371528.2	protein_coding	protein_coding	protein_coding	protein_coding	4	59	2	2.00468	2.81316	3.62164	0.0166344	5.41944e-4	0.110511	0.0215026
chr4	39916063	39916160	2131580	0	-	0.474227	(0.44,0.476]	chr4	210206	20	INTRON	INTRON	PDS5A	ENSG00000121892.15	ENST00000303538.13:ENST00000503396.5:ENST00000513798.1	protein_coding	protein_coding	protein_coding	protein_coding	3	57	2	2.80275	2.81313	2.82351	0.0146513	0.00191049	0.0982604	0.0403772
chr5	36931443	36931542	2338977	0	+	0.444444	(0.44,0.476]	chr5	225949	451	INTRON	INTRON	NIPBL	ENSG00000164190.19	ENST00000282516.13:ENST00000448238.2:ENST00000652901.1	protein_coding	protein_coding	protein_coding	protein_coding	3	57	2	2.80275	2.81313	2.82351	0.0146513	0.00191049	0.0982604	0.0403772
chr10	80519570	80519670	4476897	0	+	0.34	(0.32,0.35]	chr10	412121	17	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TSPAN14	ENSG00000108219.15	ENST00000429989.7:ENST00000372158.6:ENST00000372164.7:ENST00000616406.1:ENST00000265450.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	49	2	1.46414	2.8129999999999997	4.16186	0.065059	0.026079	0.179599	0.133676
chr22	20535520	20535620	7479630	0	+	0.42	(0.408,0.44]	chr22	762964	108	INTRON	INTRON	MED15	ENSG00000099917.17	ENST00000445987.5:ENST00000444094.5:ENST00000414658.5:ENST00000486656.5:ENST00000433831.5:ENST00000432052.5:ENST00000292733.11:ENST00000263205.11:ENST00000477824.5:ENST00000406969.5:ENST00000382974.6:ENST00000441501.5:ENST00000438962.1:ENST00000445189.5:ENST00000451058.5:ENST00000473028.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	87	2	2.17577	2.81298	3.45019	0.00269594	0.00152664	0.0479115	0.0353936
chr1	27912465	27912565	407773	0	-	0.52	(0.515,0.57]	chr1	49095	48	INTRON	INTRON	RPA2	ENSG00000117748.10	ENST00000373912.8:ENST00000373909.7:ENST00000313433.11:ENST00000444045.1	protein_coding	protein_coding	protein_coding	protein_coding	4	65	2	2.78208	2.812975	2.84387	0.00209264	0.0018149	0.0424943	0.0384415
chr16	69697743	69697842	6381351	0	+	0.464646	(0.44,0.476]	chr16	613255	15	UTR3	UTR3:EXON_MRNA	NFAT5	ENSG00000102908.22	ENST00000426654.6:ENST00000349945.7:ENST00000354436.6:ENST00000627621.3:ENST00000650987.1:ENST00000567239.5:ENST00000393742.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	68	2	1.98938	2.81288	3.63638	0.0198602	4.74104e-4	0.109608	0.0196816
chr7	152406244	152406343	3680996	0	-	0.474747	(0.44,0.476]	chr7	341660	472	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000682301.1:ENST00000452749.2:ENST00000680867.1:ENST00000683800.1:ENST00000684278.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	59	2	2.60774	2.81278	3.01782	0.0255874	7.8136e-4	0.120269	0.0257169
chr12	62572380	62572479	5152254	0	+	0.373737	(0.35,0.378]	chr12	487623	4	INTRON	INTRON	MON2	ENSG00000061987.16	ENST00000641654.1:ENST00000546600.5:ENST00000393630.8:ENST00000547095.5:ENST00000552738.5:ENST00000393629.6:ENST00000551307.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	61	2	2.49643	2.81274	3.12905	0.00752974	0.00566312	0.0773151	0.0653997
chrX	151406525	151406623	7735205	0	+	0.438776	(0.408,0.44]	chrX	791463	16	UTR3	UTR3:EXON_MRNA	VMA21	ENSG00000160131.14	ENST00000330374.7	protein_coding	protein_coding	protein_coding	protein_coding	14	256	2	2.70165	2.81274	2.92383	8.82201e-5	1.74743e-5	0.0079097	0.00336167
chr7	112784158	112784253	3624342	0	-	0.284211	(0.28,0.32]	chr7	337164	5	CDS	CDS:EXON_MRNA:SS3_PROX:INTRON	TMEM168	ENSG00000146802.13	ENST00000312814.11:ENST00000454074.5:ENST00000447395.5:ENST00000449743.1:ENST00000441474.1	protein_coding	protein_coding	protein_coding	protein_coding	6	132	2	2.50162	2.812685	3.12375	0.0013622	0.00104535	0.0339121	0.0294493
chr1	52377779	52377878	456791	0	-	0.323232	(0.32,0.35]	chr1	54847	18	INTRON	INTRON	ORC1	ENSG00000085840.13	ENST00000371568.8:ENST00000371566.1	protein_coding	protein_coding	protein_coding	protein_coding	4	88	2	2.66302	2.81267	2.96232	0.00542632	0.00118924	0.0645052	0.031662
chr2	190897167	190897267	959646	0	+	0.54	(0.515,0.57]	chr2	104167	7	INTRON	INTRON	GLS	ENSG00000115419.13	ENST00000320717.8:ENST00000338435.8:ENST00000469774.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	12	178	2	2.76256	2.81267	2.86278	6.68e-5	2.32879e-5	0.00720358	0.00378116
chr16	85539572	85539672	6415226	0	+	0.46	(0.44,0.476]	chr16	615465	1803	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	3	57	2	2.27304	2.812655	3.35227	0.0158915	0.0022005699999999998	0.109464	0.0417893
chr20	41585333	41585432	7344214	0	-	0.484848	(0.476,0.515]	chr20	748566	208	INTRON	INTRON	CHD6	ENSG00000124177.16	ENST00000373233.8:ENST00000373222.3:ENST00000482596.1:ENST00000440647.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	67	2	2.20789	2.812585	3.41728	0.00820497	0.00165726	0.081115	0.0369207
chr5	54020709	54020809	2618011	0	-	0.45	(0.44,0.476]	chr5	248835	1087	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	126	2	2.53021	2.812575	3.09494	8.87528e-4	1.77821e-4	0.0271952	0.0121697
chr9	92286037	92286137	4287268	0	-	0.43	(0.408,0.44]	chr9	394250	3	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	IARS1	ENSG00000196305.19	ENST00000375643.7:ENST00000443024.7:ENST00000447699.7:ENST00000683537.1:ENST00000684726.1:ENST00000683192.1:ENST00000683565.1:ENST00000682756.1:ENST00000684542.1:ENST00000683793.1:ENST00000683817.1:ENST00000682141.1:ENST00000682893.1:ENST00000684557.1:ENST00000498025.2:ENST00000682156.1:ENST00000627121.3:ENST00000683469.1:ENST00000683495.1:ENST00000682578.1:ENST00000682533.1:ENST00000472894.2:ENST00000684757.1:ENST00000684445.1:ENST00000683376.1:ENST00000683679.1:ENST00000683119.1:ENST00000490438.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	58	2	2.71911	2.812555	2.906	0.0189489	0.00131817	0.108861	0.0333932
chr3	10142617	10142689	1363120	0	+	0.541667	(0.515,0.57]	chr3	143665	2	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	VHL	ENSG00000134086.9	ENST00000696153.1:ENST00000256474.3:ENST00000696142.1:ENST00000345392.2:ENST00000696143.1:ENST00000477538.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	74	2	2.08662	2.8125299999999998	3.53844	0.00375149	7.92613e-4	0.0562562	0.0259663
chr15	63711285	63711384	6199646	0	-	0.343434	(0.32,0.35]	chr15	591306	41	INTRON	INTRON	HERC1	ENSG00000103657.14	ENST00000443617.7:ENST00000561400.1	protein_coding	protein_coding	protein_coding	protein_coding	4	79	2	2.10695	2.812515	3.51808	0.0127483	0.00151238	0.0987441	0.0352794
chr1	112650311	112650410	186637	0	+	0.414141	(0.408,0.44]	chr1	20651	4	INTRON	INTRON	CAPZA1	ENSG00000116489.13	ENST00000476936.5:ENST00000263168.4:ENST00000498626.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	91	2	2.76768	2.812455	2.85723	0.00211413	6.71664e-4	0.0415897	0.0235155
chr12	91526270	91526370	5384479	0	-	0.52	(0.515,0.57]	chr12	513485	190	INTRON	INTRON	ENSG00000289605	ENSG00000289605.1	ENST00000685093.1	lncRNA	lncRNA	lncRNA	lncRNA	5	78	2	2.763	2.81242	2.86184	0.00257143	3.55958e-4	0.045134	0.0168968
chr1	21725506	21725602	396273	0	-	0.520833	(0.515,0.57]	chr1	47275	5	INTRON	INTRON	USP48	ENSG00000090686.16	ENST00000400301.5:ENST00000308271.14:ENST00000529637.5:ENST00000487880.2:ENST00000526044.5:ENST00000534705.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	17	248	2	2.79679	2.81238	2.82797	1.98291e-5	6.07158e-6	0.00360253	0.00172741
chr22	20535221	20535321	7479627	0	+	0.44	(0.408,0.44]	chr22	762964	105	INTRON	INTRON	MED15	ENSG00000099917.17	ENST00000445987.5:ENST00000444094.5:ENST00000414658.5:ENST00000486656.5:ENST00000433831.5:ENST00000432052.5:ENST00000292733.11:ENST00000263205.11:ENST00000477824.5:ENST00000406969.5:ENST00000382974.6:ENST00000441501.5:ENST00000438962.1:ENST00000445189.5:ENST00000451058.5:ENST00000473028.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	104	2	2.58565	2.812235	3.03882	9.66897e-4	6.66092e-4	0.0282401	0.0233804
chr17	42270316	42270416	6772164	0	-	0.39	(0.378,0.408]	chr17	666964	378	INTRON	INTRON	STAT5B	ENSG00000173757.10	ENST00000293328.8:ENST00000468312.1:ENST00000415845.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	130	2	2.66588	2.81188	2.95788	0.00156732	8.6542e-5	0.0360728	0.00783027
chr17	67361261	67361361	6826092	0	-	0.48	(0.476,0.515]	chr17	674624	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	PSMD12	ENSG00000197170.10	ENST00000356126.8:ENST00000357146.4:ENST00000584008.5:ENST00000584289.5:ENST00000581618.1:ENST00000579365.5:ENST00000578015.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	56	2	2.68023	2.811865	2.9435	0.00929849	0.00353671	0.0817766	0.0546236
chr2	186500793	186500887	942964	0	+	0.489362	(0.476,0.515]	chr2	103258	1	SS3_PROX	SS3_PROX:INTRON	ZC3H15	ENSG00000065548.18	ENST00000421536.5:ENST00000337859.11:ENST00000437396.1:ENST00000481101.5:ENST00000468120.5:ENST00000496289.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	56	2	2.68023	2.811865	2.9435	0.00929849	0.00353671	0.0817766	0.0546236
chr4	1902536	1902634	1910888	0	+	0.479592	(0.476,0.515]	chr4	191741	9	INTRON	INTRON	NSD2	ENSG00000109685.19	ENST00000508803.6:ENST00000508355.5:ENST00000514045.5:ENST00000398261.6:ENST00000382891.9:ENST00000353275.9:ENST00000382892.6:ENST00000382895.7:ENST00000312087.10:ENST00000420906.6:ENST00000503128.5:ENST00000509115.5:ENST00000677559.1:ENST00000512700.2:ENST00000678714.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	56	2	2.68023	2.811865	2.9435	0.00929849	0.00353671	0.0817766	0.0546236
chr12	51009824	51009916	5324627	0	-	0.434783	(0.408,0.44]	chr12	507731	7	INTRON	INTRON	SLC11A2	ENSG00000110911.17	ENST00000547688.7:ENST00000644495.1:ENST00000643884.1:ENST00000546636.5:ENST00000547198.5:ENST00000394904.9:ENST00000262052.9:ENST00000643123.1:ENST00000646740.1:ENST00000642227.1:ENST00000541174.6:ENST00000546743.5:ENST00000547510.5:ENST00000546488.5:ENST00000547579.5:ENST00000550714.5:ENST00000547732.5:ENST00000548193.5:ENST00000646988.1:ENST00000549625.1:ENST00000681324.1:ENST00000550995.5:ENST00000550329.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	57	2	2.78289	2.81183	2.84077	0.0132196	0.0022785	0.0940535	0.0437013
chr5	32173545	32173645	2597508	0	-	0.55	(0.515,0.57]	chr5	246745	4	SS5_PROX	SS5_PROX:INTRON	GOLPH3	ENSG00000113384.14	ENST00000265070.7:ENST00000503610.5:ENST00000512668.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	107	2	2.25762	2.811825	3.36603	9.74778e-4	1.39454e-4	0.0287765	0.0107072
chrX	20139598	20139694	7772187	0	-	0.447917	(0.44,0.476]	chrX	794444	6	INTRON	INTRON	EIF1AX	ENSG00000173674.11	ENST00000379607.10:ENST00000379593.1	protein_coding	protein_coding	protein_coding	protein_coding	4	72	2	2.47804	2.811815	3.14559	0.00384923	0.00325838	0.0562562	0.0508595
chr17	62552586	62552686	6653628	0	+	0.37	(0.35,0.378]	chr17	649365	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TLK2	ENSG00000146872.19	ENST00000582809.5:ENST00000684213.1:ENST00000582195.6:ENST00000682085.1:ENST00000580705.5:ENST00000346027.10:ENST00000326270.13:ENST00000682203.1:ENST00000343388.11:ENST00000683536.1:ENST00000684440.1:ENST00000684772.1:ENST00000682274.1:ENST00000682827.1:ENST00000682075.1:ENST00000683104.1:ENST00000684012.1:ENST00000581041.5:ENST00000684553.1:ENST00000683737.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	51	2	1.42644	2.81177	4.1971	0.0390715	0.0367539	0.161228	0.138959
chr6	16268516	16268616	2826275	0	+	0.51	(0.476,0.515]	chr6	265366	100	INTRON	INTRON	GMPR	ENSG00000137198.10	ENST00000259727.5:ENST00000543191.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	124	2	2.6224	2.81173	3.00106	5.5634e-4	2.78737e-4	0.0214853	0.0153269
chr1	168245834	168245933	250363	0	+	0.323232	(0.32,0.35]	chr1	29769	34	UTR3	UTR3:EXON_MRNA	SFT2D2	ENSG00000213064.10	ENST00000271375.7	protein_coding	protein_coding	protein_coding	protein_coding	3	65	2	2.54408	2.811715	3.07935	0.00724137	0.00659077	0.0737338	0.0729826
chr4	127940197	127940297	2238311	0	-	0.34	(0.32,0.35]	chr4	219077	2	SS3_PROX	SS3_PROX:INTRON	MFSD8	ENSG00000164073.11	ENST00000296468.8:ENST00000641686.2:ENST00000641186.1:ENST00000641774.1:ENST00000641748.1:ENST00000641508.1:ENST00000641690.1:ENST00000641928.1:ENST00000641464.1:ENST00000641092.1:ENST00000641397.1:ENST00000641393.1:ENST00000641025.1:ENST00000641509.1:ENST00000642034.1:ENST00000641178.1:ENST00000641147.1:ENST00000641753.1:ENST00000641434.1:ENST00000641482.1:ENST00000641133.1:ENST00000641869.1:ENST00000515130.6:ENST00000641332.1:ENST00000641870.1:ENST00000641949.1:ENST00000641228.1:ENST00000641590.1:ENST00000641843.1:ENST00000642078.1:ENST00000641882.1:ENST00000641742.1:ENST00000641658.1:ENST00000513559.6:ENST00000509826.2:ENST00000642042.1:ENST00000641340.1:ENST00000641538.1:ENST00000641369.1:ENST00000642121.1:ENST00000641243.1:ENST00000505284.6:ENST00000641134.1:ENST00000641695.1:ENST00000641503.1:ENST00000641743.1:ENST00000641776.1:ENST00000641264.1:ENST00000642143.1:ENST00000508441.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	65	2	2.54408	2.811715	3.07935	0.00724137	0.00659077	0.0737338	0.0729826
chr4	150717477	150717577	2268750	0	-	0.47	(0.44,0.476]	chr4	220726	334	INTRON	INTRON	LRBA	ENSG00000198589.14	ENST00000357115.9:ENST00000651943.2:ENST00000510413.5:ENST00000509835.5:ENST00000651695.1:ENST00000651035.1:ENST00000507224.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	60	2	2.00609	2.811635	3.61718	0.0360127	7.37432e-4	0.152355	0.02495
chr16	8061622	8061722	6441125	0	-	0.42	(0.408,0.44]	chr16	620351	540	INTRON	INTRON	ENSG00000260289	ENSG00000260289.2	ENST00000670665.1:ENST00000654046.1:ENST00000567103.2	lncRNA	lncRNA	lncRNA	lncRNA	4	76	2	2.75707	2.811595	2.86612	0.00317496	0.00157924	0.0503542	0.0366789
chr15	100572065	100572161	6268720	0	-	0.260417	[0,0.28]	chr15	597865	1	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	LINS1	ENSG00000140471.17	ENST00000560783.1:ENST00000314742.13:ENST00000559169.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	60	2	2.80396	2.81159	2.81922	0.0197411	0.0161429	0.109608	0.109464
chr6	169691489	169691588	3267023	0	-	0.373737	(0.35,0.378]	chr6	303253	18	INTRON	INTRON	WDR27	ENSG00000184465.16	ENST00000448612.6:ENST00000648472.1:ENST00000423258.5:ENST00000647790.1:ENST00000647873.1:ENST00000649303.1:ENST00000647889.1:ENST00000648017.1:ENST00000650296.1:ENST00000546953.1:ENST00000649806.1:ENST00000474018.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	85	2	1.78162	2.81141	3.8412	0.0251606	1.97447e-4	0.12011	0.0122531
chr20	63899802	63899901	7301005	0	+	0.494949	(0.476,0.515]	chr20	743135	41	INTRON	INTRON	DNAJC5	ENSG00000101152.11	ENST00000360864.9:ENST00000470551.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	134	2	2.09592	2.811185	3.52645	0.00175358	8.15975e-5	0.0387174	0.00810741
chr16	23875010	23875110	6324150	0	+	0.44	(0.408,0.44]	chr16	605697	58	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000645517.1:ENST00000498739.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	146	2	1.76999	2.811165	3.85234	0.0078449	6.9129e-6	0.076155	0.00187033
chr4	128853948	128854046	2044716	0	+	0.44898	(0.44,0.476]	chr4	203029	13	INTRON	INTRON	JADE1	ENSG00000077684.16	ENST00000226319.11:ENST00000511647.5:ENST00000452328.6:ENST00000512960.5:ENST00000610919.4:ENST00000413543.6:ENST00000611140.4	protein_coding	protein_coding	protein_coding	protein_coding	2	42	2	2.5364	2.8111550000000003	3.08591	0.0309324	0.00481262	0.13151	0.0638089
chr7	4692662	4692762	3270019	0	+	0.46	(0.44,0.476]	chr7	303884	94	INTRON	INTRON	FOXK1	ENSG00000164916.11	ENST00000328914.5	protein_coding	protein_coding	protein_coding	protein_coding	2	42	2	2.5364	2.8111550000000003	3.08591	0.0309324	0.00481262	0.13151	0.0638089
chr1	149847766	149847865	549468	0	-	0.393939	(0.378,0.408]	chr1	64512	34	EXON_LNCRNA	EXON_LNCRNA	H2BC20P	ENSG00000261716.2	ENST00000564237.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	3	61	2	2.63057	2.811135	2.9917	0.0068789	0.0053733	0.0749442	0.0642754
chr1	160336285	160336377	572250	0	-	0.478261	(0.476,0.515]	chr1	69366	6	INTRON	INTRON	COPA	ENSG00000122218.17	ENST00000241704.8:ENST00000696204.1:ENST00000696203.1:ENST00000649963.1:ENST00000696208.1:ENST00000696207.1:ENST00000368069.7:ENST00000647693.1:ENST00000649787.1:ENST00000650154.1:ENST00000647799.1:ENST00000648805.1:ENST00000647683.1:ENST00000649231.1:ENST00000696209.1:ENST00000696210.1:ENST00000696211.1:ENST00000696212.1:ENST00000696214.1:ENST00000696213.1:ENST00000696215.1:ENST00000541366.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	14	220	2	1.94573	2.8110399999999998	3.67635	0.00228147	6.71691e-7	0.0426511	4.53702e-4
chr10	17668897	17668996	4399514	0	+	0.323232	(0.32,0.35]	chr10	406156	80	INTRON	INTRON	STAM	ENSG00000136738.15	ENST00000377524.8:ENST00000377500.1:ENST00000445846.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	41	2	1.45026	2.811035	4.17181	0.0622478	0.04531	0.194723	0.149888
chr2	175166732	175166832	1272327	0	-	0.33	(0.32,0.35]	chr2	134482	152	INTRON	INTRON	ATF2	ENSG00000115966.18	ENST00000345739.9:ENST00000426833.7:ENST00000264110.7:ENST00000409635.5:ENST00000428760.5:ENST00000392544.5:ENST00000417080.5:ENST00000456655.5:ENST00000421438.5:ENST00000429579.5:ENST00000415955.5:ENST00000409499.5:ENST00000435231.6:ENST00000437522.5:ENST00000409833.5:ENST00000413123.5:ENST00000445349.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	41	2	1.45026	2.811035	4.17181	0.0622478	0.04531	0.194723	0.149888
chr20	50091726	50091826	7353739	0	-	0.26	[0,0.28]	chr20	749863	71	INTRON	INTRON	UBE2V1	ENSG00000244687.13	ENST00000340309.7:ENST00000371677.7:ENST00000415862.6:ENST00000557021.5:ENST00000617119.4:ENST00000625172.3:ENST00000396059.7:ENST00000371674.8:ENST00000371657.9:ENST00000483534.5:ENST00000492371.6:ENST00000486653.5:ENST00000490555.1:ENST00000493090.5:ENST00000467839.5:ENST00000472923.5:ENST00000432266.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	173	2	2.73933	2.811015	2.8827	0.00341901	2.96382e-4	0.0517761	0.0154143
chrX	46547257	46547356	7653097	0	+	0.454545	(0.44,0.476]	chrX	782977	9	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	ZNF674-AS1	ENSG00000230844.3	ENST00000657382.1:ENST00000421685.2:ENST00000609887.1	lncRNA	lncRNA	lncRNA	lncRNA	4	37	2	1.49356	2.810995	4.12843	0.0537505	0.0337192	0.180803	0.134145
chr7	129934317	129934417	3637786	0	-	0.47	(0.44,0.476]	chr7	338226	84	INTRON	INTRON	UBE2H	ENSG00000186591.13	ENST00000355621.8:ENST00000649897.1:ENST00000473814.6:ENST00000496698.5:ENST00000472396.5:ENST00000480245.5:ENST00000490974.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	95	2	2.1123	2.81092	3.50954	0.0023263	0.00116647	0.0442989	0.0312127
chr2	152720092	152720180	894263	0	+	0.386364	(0.378,0.408]	chr2	99113	2	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ARL6IP6	ENSG00000177917.12	ENST00000690727.1:ENST00000685752.1:ENST00000688293.1:ENST00000686839.1:ENST00000689155.1:ENST00000690703.1:ENST00000691702.1:ENST00000691523.1:ENST00000688012.1:ENST00000687504.1:ENST00000455875.6:ENST00000692124.1:ENST00000693573.1:ENST00000686951.1:ENST00000692399.1:ENST00000425034.6:ENST00000686080.1:ENST00000326446.10:ENST00000688171.1:ENST00000463690.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	61	2	2.60296	2.81091	3.01886	0.0267851	7.99379e-4	0.123349	0.0258804
chr16	22259689	22259779	6321220	0	+	0.433333	(0.408,0.44]	chr16	605133	5	INTRON	INTRON	EEF2K	ENSG00000103319.12	ENST00000263026.10:ENST00000568269.5:ENST00000563555.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	57	2	2.11447	2.8108899999999997	3.50731	0.0285207	8.5918e-4	0.12666	0.0265787
chr11	75297516	75297615	4989613	0	-	0.444444	(0.44,0.476]	chr11	471481	71	INTRON	INTRON	ARRB1	ENSG00000137486.17	ENST00000420843.7:ENST00000360025.7:ENST00000532525.1:ENST00000524400.5:ENST00000533609.5:ENST00000527385.1:ENST00000533255.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	42	2	2.80275	2.810855	2.81896	0.0146513	0.0120766	0.0982604	0.0962311
chr1	176042185	176042285	590047	0	-	0.51	(0.476,0.515]	chr1	70892	141	INTRON	INTRON	COP1	ENSG00000143207.21	ENST00000367669.8:ENST00000367667.5:ENST00000461830.6:ENST00000367666.5:ENST00000649803.1:ENST00000308769.12	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	43	2	2.3223	2.8108449999999996	3.29939	0.0519312	0.00211868	0.159306	0.0425644
chr17	5503785	5503884	6715025	0	-	0.50505	(0.476,0.515]	chr17	658390	16	EXON_MRNA	EXON_MRNA:INTRON	NLRP1	ENSG00000091592.16	ENST00000544378.6:ENST00000262467.10:ENST00000613500.4:ENST00000574512.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	43	2	2.3223	2.8108449999999996	3.29939	0.0519312	0.00211868	0.159306	0.0425644
chr1	37548122	37548221	424205	0	-	0.313131	(0.28,0.32]	chr1	51278	67	INTRON	INTRON	SNIP1	ENSG00000163877.11	ENST00000296215.8:ENST00000468040.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	85	2	2.35314	2.8108199999999997	3.2685	0.00539714	0.00432734	0.066545000000000007	0.0579331
chr8	52712477	52712577	3951089	0	-	0.37	(0.35,0.378]	chr8	362390	252	INTRON	INTRON	RB1CC1	ENSG00000023287.13	ENST00000025008.10:ENST00000435644.6:ENST00000521611.1:ENST00000518710.5:ENST00000517963.1:ENST00000518211.1:ENST00000518468.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	11	210	2	2.66583	2.810805	2.95578	4.03436e-4	2.11641e-5	0.0185763	0.00355554
chr4	55530721	55530821	2149747	0	-	0.41	(0.408,0.44]	chr4	211545	203	INTRON	INTRON	CLOCK	ENSG00000134852.15	ENST00000513440.6:ENST00000381322.5:ENST00000435527.6:ENST00000506923.5:ENST00000509151.5:ENST00000513033.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	58	2	1.94273	2.8107949999999997	3.67886	0.0456237	3.86173e-4	0.149888	0.017761
chr6	158773507	158773607	3252871	0	-	0.43	(0.408,0.44]	chr6	302340	17	INTRON	INTRON	EZR	ENSG00000092820.19	ENST00000337147.11:ENST00000367075.4	protein_coding	protein_coding	protein_coding	protein_coding	3	57	2	2.36185	2.810665	3.25948	0.0133164	0.00246454	0.094512	0.0459102
chr19	14517488	14517574	7144787	0	-	0.5	(0.476,0.515]	chr19	721457	1	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DNAJB1	ENSG00000132002.9	ENST00000594099.6:ENST00000596075.2:ENST00000678009.1:ENST00000677848.1:ENST00000596853.6:ENST00000254322.3:ENST00000676577.1:ENST00000676515.1:ENST00000598692.2:ENST00000677762.1:ENST00000678338.1:ENST00000595139.2:ENST00000598235.2:ENST00000601533.6:ENST00000677204.1:ENST00000679223.1:ENST00000676982.1:ENST00000678098.1:ENST00000396969.8:ENST00000595992.6	protein_coding	protein_coding	protein_coding	protein_coding	4	68	2	2.17347	2.8106549999999997	3.44784	0.010447	0.00113238	0.0855102	0.0308465
chr9	130875945	130876044	4215489	0	+	0.50505	(0.476,0.515]	chr9	386466	5	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000318560.6	protein_coding	protein_coding	protein_coding	protein_coding	4	68	2	2.17347	2.8106549999999997	3.44784	0.010447	0.00113238	0.0855102	0.0308465
chrX	44902485	44902585	7648895	0	+	0.46	(0.44,0.476]	chrX	782726	281	INTRON	INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000675440.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000621147.5:ENST00000475233.1:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	58	2	1.9039	2.810585	3.71727	0.0501498	3.2089e-4	0.156383	0.0159645
chr13	50447123	50447223	5494655	0	+	0.37	(0.35,0.378]	chr13	526158	132	INTRON	INTRON	DLEU1	ENSG00000176124.15	ENST00000467721.5:ENST00000468522.5:ENST00000490577.5:ENST00000491341.5:ENST00000491615.5:ENST00000463474.7:ENST00000468168.5:ENST00000476738.5:ENST00000461527.7:ENST00000485007.5:ENST00000475913.5:ENST00000470726.7:ENST00000479420.5:ENST00000474630.6:ENST00000491482.5:ENST00000647700.1:ENST00000484869.6:ENST00000469095.6:ENST00000462427.2:ENST00000470593.5:ENST00000472136.5:ENST00000498557.5:ENST00000460525.6	lncRNA	lncRNA	lncRNA	lncRNA	3	34	2	1.65083	2.810575	3.97032	0.0578667	0.0521072	0.177022	0.167723
chr13	113524906	113525005	5549512	0	+	0.353535	(0.35,0.378]	chr13	530312	38	INTRON	INTRON	TMCO3	ENSG00000150403.18	ENST00000434316.7:ENST00000375391.5:ENST00000474393.5:ENST00000465556.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	34	2	1.65083	2.810575	3.97032	0.0578667	0.0521072	0.177022	0.167723
chr3	49395240	49395339	1693895	0	-	0.373737	(0.35,0.378]	chr3	173707	193	INTRON	INTRON	RHOA	ENSG00000067560.14	ENST00000678200.1:ENST00000422781.6:ENST00000676712.2:ENST00000678921.2:ENST00000445425.6:ENST00000454011.7:ENST00000418115.6:ENST00000679208.1:ENST00000677684.1:ENST00000431929.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	34	2	1.65083	2.810575	3.97032	0.0578667	0.0521072	0.177022	0.167723
chr12	49058816	49058914	5320831	0	-	0.459184	(0.44,0.476]	chr12	506907	31	INTRON	INTRON	KMT2D	ENSG00000167548.18	ENST00000683543.2:ENST00000301067.12:ENST00000692465.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	68	2	1.90381	2.81054	3.71727	0.0260626	3.2089e-4	0.122153	0.0159645
chr2	43961915	43962012	1110268	0	-	0.443299	(0.44,0.476]	chr2	119084	9	INTRON	INTRON	LRPPRC	ENSG00000138095.20	ENST00000260665.12:ENST00000682308.1:ENST00000683459.1:ENST00000683623.1:ENST00000683125.1:ENST00000683994.1:ENST00000684619.1:ENST00000683833.1:ENST00000682546.1:ENST00000682585.1:ENST00000683220.1:ENST00000683796.1:ENST00000683590.1:ENST00000684306.1:ENST00000683213.1:ENST00000682779.1:ENST00000682885.1:ENST00000683346.1:ENST00000683072.1:ENST00000682303.1:ENST00000683329.1:ENST00000684383.1:ENST00000682480.1:ENST00000684290.1:ENST00000684341.1:ENST00000682595.1:ENST00000683802.1:ENST00000681961.1:ENST00000683694.1:ENST00000683989.1:ENST00000447246.2:ENST00000409659.6:ENST00000682104.1:ENST00000683934.1:ENST00000681959.1:ENST00000684482.1:ENST00000683082.1:ENST00000467058.2:ENST00000409946.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	68	2	2.07016	2.8104199999999997	3.55068	0.0151815	7.06861e-4	0.0994339	0.0241881
chr19	19517231	19517331	7036413	0	+	0.45	(0.44,0.476]	chr19	701528	5	INTRON	INTRON	NDUFA13	ENSG00000186010.19	ENST00000502506.6:ENST00000507754.9:ENST00000503283.5:ENST00000428459.6:ENST00000511584.2:ENST00000511180.4:ENST00000606722.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	116	2	2.22166	2.810345	3.39903	0.00276664	1.07749e-4	0.0469265	0.00878438
chr5	126786039	126786139	2479264	0	+	0.29	(0.28,0.32]	chr5	236699	78	INTRON	INTRON	LMNB1	ENSG00000113368.12	ENST00000460265.5:ENST00000261366.10:ENST00000504788.5:ENST00000472034.5:ENST00000492190.5:ENST00000395354.1:ENST00000463908.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	87	2	1.72279	2.810275	3.89776	0.0496859	2.03846e-4	0.156383	0.0124395
chr9	123254448	123254548	4340340	0	-	0.33	(0.32,0.35]	chr9	398963	171	INTRON	INTRON	STRBP	ENSG00000165209.19	ENST00000348403.10:ENST00000360998.3:ENST00000407982.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	117	2	1.71735	2.810245	3.90314	0.0111024	3.02468e-4	0.0932464	0.0160895
chr21	37106238	37106338	7405170	0	+	0.29	(0.28,0.32]	chr21	754591	50	INTRON	INTRON	TTC3	ENSG00000182670.14	ENST00000492275.6:ENST00000418766.6:ENST00000485402.5:ENST00000450533.6:ENST00000438055.5:ENST00000696812.1:ENST00000696811.1:ENST00000463216.6:ENST00000481605.6:ENST00000540756.5:ENST00000494243.5:ENST00000411496.2:ENST00000399017.6:ENST00000354749.6:ENST00000479930.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	89	2	1.56134	2.8101900000000004	4.05904	0.0740624	9.15765e-5	0.191153	0.00800742
chr4	82818884	82818978	2179341	0	-	0.37234	(0.35,0.378]	chr4	214232	5	UTR3	UTR3:EXON_MRNA	SEC31A	ENSG00000138674.17	ENST00000395310.7:ENST00000513858.5:ENST00000348405.8:ENST00000503937.5:ENST00000448323.5:ENST00000311785.11:ENST00000509142.5:ENST00000443462.6:ENST00000500777.6:ENST00000505472.5	protein_coding	protein_coding	protein_coding	protein_coding	6	96	2	2.32503	2.810165	3.2953	0.0031465	0.0014174	0.0500431	0.0346457
chr13	106558231	106558331	5648832	0	-	0.24	[0,0.28]	chr13	538150	12	EXON_MRNA	EXON_MRNA:INTRON	ARGLU1	ENSG00000134884.15	ENST00000400198.8:ENST00000472226.2:ENST00000375926.5:ENST00000360629.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	13	190	2	1.43355	2.8101350000000003	4.18672	0.0197582	1.69466e-4	0.120363	0.0119596
chr20	3910076	3910176	7227108	0	+	0.44	(0.408,0.44]	chr20	734496	1	SS3_PROX	SS3_PROX:INTRON	PANK2	ENSG00000125779.24	ENST00000497424.5:ENST00000316562.9:ENST00000495692.5:ENST00000610179.7:ENST00000643504.2:ENST00000336066.8:ENST00000646394.1:ENST00000621507.1:ENST00000471830.1:ENST00000464452.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	43	2	2.36073	2.810105	3.25948	0.0481658	0.00246454	0.153019	0.0459102
chr8	30721029	30721128	3932680	0	-	0.434343	(0.408,0.44]	chr8	360269	86	INTRON	INTRON	GSR	ENSG00000104687.14	ENST00000221130.11:ENST00000643653.1:ENST00000643525.1:ENST00000537535.5:ENST00000541648.5:ENST00000546342.5:ENST00000523295.5:ENST00000521479.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	43	2	2.36073	2.810105	3.25948	0.0481658	0.00246454	0.153019	0.0459102
chr16	14916841	14916940	6304718	0	+	0.515152	(0.476,0.515]	chr16	603076	46	INTRON	INTRON	PKD1P3	ENSG00000183458.14	ENST00000534164.6	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	2	43	2	2.56868	2.8101000000000003	3.05152	0.0256676	0.0064848	0.133676	0.0699952
chr12	53452376	53452476	5142885	0	+	0.54	(0.515,0.57]	chr12	485372	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	PCBP2	ENSG00000197111.16	ENST00000546463.6:ENST00000437231.5:ENST00000447282.5:ENST00000359282.9:ENST00000549863.5:ENST00000359462.9:ENST00000550520.6:ENST00000552296.6	protein_coding	protein_coding	protein_coding	protein_coding	10	150	2	2.78643	2.809845	2.83326	8.26788e-5	7.94169e-5	0.00812487	0.00742264
chr7	72997337	72997431	3554090	0	-	0.595745	(0.57,1]	chr7	330647	4	EXON_LNCRNA	EXON_LNCRNA:INTRON	STAG3L3	ENSG00000174353.17	ENST00000436857.5:ENST00000428423.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	8	72	2	2.39967	2.809835	3.22	6.71401e-4	3.00499e-5	0.0235155	0.00455415
chr1	65601191	65601291	139005	0	+	0.34	(0.32,0.35]	chr1	15537	4	SS3_PROX	SS3_PROX:INTRON	LEPR	ENSG00000116678.20	ENST00000371060.7:ENST00000371059.7:ENST00000349533.11:ENST00000616738.4:ENST00000344610.12:ENST00000462765.5:ENST00000371058.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	88	2	2.72473	2.80974	2.89475	0.00433316	0.00160352	0.0579683	0.0367961
chr13	19724055	19724155	5552351	0	-	0.3	(0.28,0.32]	chr13	530696	141	INTRON	INTRON	PSPC1	ENSG00000121390.19	ENST00000471658.5:ENST00000492741.5:ENST00000635562.1:ENST00000338910.9:ENST00000619300.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	133	2	2.74699	2.80966	2.87233	0.0028269	4.11473e-4	0.0472361	0.0181365
chr5	54046406	54046506	2618268	0	-	0.55	(0.515,0.57]	chr5	248835	1344	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	82	2	1.77301	2.80963	3.84625	0.0109049	1.34155e-4	0.0873034	0.00998237
chr4	159257084	159257184	2075049	0	+	0.34	(0.32,0.35]	chr4	205218	129	INTRON	INTRON	RAPGEF2	ENSG00000109756.10	ENST00000644474.1:ENST00000691494.1:ENST00000505478.5:ENST00000504604.5:ENST00000644902.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	36	2	1.67393	2.80961	3.94529	0.0693433	0.0496128	0.184298	0.174685
chr16	88724608	88724708	6539576	0	-	0.5	(0.476,0.515]	chr16	633887	2	SS5_PROX	SS5_PROX:INTRON	PIEZO1	ENSG00000103335.22	ENST00000301015.14:ENST00000474606.1:ENST00000475586.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	125	2	2.51682	2.8096	3.10238	9.59562e-4	1.64004e-4	0.0284801	0.0116917
chr9	136450417	136450517	4374689	0	-	0.48	(0.476,0.515]	chr9	402984	2	SS5_PROX	SS5_PROX:INTRON	SEC16A	ENSG00000148396.19	ENST00000290037.10:ENST00000313050.11:ENST00000371706.8:ENST00000453963.5:ENST00000277537.10:ENST00000684901.1:ENST00000689049.1:ENST00000688461.1:ENST00000688052.1:ENST00000690691.1:ENST00000431893.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	42	2	2.48527	2.80958	3.13389	0.03496	0.00405473	0.13747500000000001	0.0578376
chr19	47782466	47782562	7087298	0	+	0.385417	(0.378,0.408]	chr19	709175	4	EXON_MRNA	EXON_MRNA:INTRON	SELENOW	ENSG00000178980.16	ENST00000593892.5:ENST00000599874.5:ENST00000601419.5:ENST00000601048.6:ENST00000598273.5:ENST00000598956.5:ENST00000601937.5:ENST00000599627.1:ENST00000602163.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	59	2	2.78946	2.809565	2.82967	0.0158859	0.00189968	0.101453	0.0402736
chrX	336111	336211	7741669	0	-	0.45	(0.44,0.476]	chrX	792743	17	EXON_MRNA	EXON_MRNA:INTRON	PPP2R3B	ENSG00000167393.18	ENST00000390665.9:ENST00000479438.6:ENST00000477110.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	44	2	2.49112	2.809555	3.12799	0.0315968	0.0050635	0.144381	0.0621733
chr6	30314682	30314782	3076873	0	-	0.42	(0.408,0.44]	chr6	286152	2	SS3_PROX	SS3_PROX:INTRON	HCG18	ENSG00000231074.10	ENST00000665953.1:ENST00000670397.1:ENST00000659132.1:ENST00000659836.1:ENST00000669374.1:ENST00000653541.1:ENST00000670071.1:ENST00000666294.1:ENST00000657247.1:ENST00000654996.1:ENST00000653301.1:ENST00000658695.1:ENST00000664861.1:ENST00000668974.1:ENST00000654915.1:ENST00000660593.1:ENST00000687430.1:ENST00000656629.1:ENST00000602550.5:ENST00000687815.1:ENST00000449544.6:ENST00000426882.6:ENST00000438412.6:ENST00000602698.6:ENST00000454129.5:ENST00000444126.5:ENST00000602290.2:ENST00000412685.8:ENST00000602861.6:ENST00000454269.6:ENST00000686575.1:ENST00000687471.1:ENST00000691282.1:ENST00000413358.6:ENST00000602498.1	lncRNA	lncRNA	lncRNA	lncRNA	6	88	2	1.43388	2.8095350000000003	4.18519	0.0509486	2.59215e-5	0.157123	0.00400663
chr16	29612402	29612502	6471725	0	-	0.56	(0.515,0.57]	chr16	625301	176	INTRON	INTRON	ENSG00000288632	ENSG00000288632.1	ENST00000675579.1	lncRNA	lncRNA	lncRNA	lncRNA	8	118	2	2.24561	2.8094900000000003	3.37337	0.00201629	1.59756e-5	0.04086	0.00301858
chr20	47280133	47280230	7348736	0	-	0.443299	(0.44,0.476]	chr20	749294	30	INTRON	INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000467200.6:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000468376.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	57	2	2.47339	2.8094900000000003	3.14559	0.0090196	0.00384923	0.080367	0.0562562
chr9	130694702	130694798	4213714	0	+	0.46875	(0.44,0.476]	chr9	386383	4	INTRON	INTRON	EXOSC2	ENSG00000130713.17	ENST00000491115.7:ENST00000686102.1:ENST00000691284.1:ENST00000685137.1:ENST00000495699.3:ENST00000688967.1:ENST00000691104.1:ENST00000691926.1:ENST00000693435.1:ENST00000688258.1:ENST00000372358.10:ENST00000546165.6:ENST00000372352.7:ENST00000687420.1:ENST00000693011.1:ENST00000687051.1:ENST00000691425.1:ENST00000693610.1:ENST00000490641.5:ENST00000691162.1:ENST00000692554.1:ENST00000692794.1:ENST00000689890.1:ENST00000688350.1:ENST00000686106.1:ENST00000372351.7:ENST00000372350.7:ENST00000685277.1:ENST00000463488.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	57	2	2.47339	2.8094900000000003	3.14559	0.0090196	0.00384923	0.080367	0.0562562
chr2	241735692	241735768	1056311	0	+	0.355263	(0.35,0.378]	chr2	112631	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	D2HGDH	ENSG00000180902.18	ENST00000403782.5:ENST00000436747.5:ENST00000321264.9:ENST00000400769.6:ENST00000463932.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	32	2	1.81767	2.8094799999999998	3.80129	0.0640429	0.0504034	0.177882	0.17488
chr20	17967193	17967291	7320556	0	-	0.27551	[0,0.28]	chr20	745337	44	INTRON	INTRON	SNX5	ENSG00000089006.17	ENST00000377768.7:ENST00000490175.5:ENST00000377759.9:ENST00000431277.5:ENST00000419004.2:ENST00000474883.5:ENST00000469704.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	111	2	2.06779	2.809455	3.55112	0.0096412	0.00205086	0.0870233	0.0409264
chr7	43679215	43679315	3525875	0	-	0.35	(0.32,0.35]	chr7	328779	131	INTRON	INTRON	COA1	ENSG00000106603.20	ENST00000415076.6:ENST00000446330.6:ENST00000446564.5:ENST00000438444.5:ENST00000223336.11:ENST00000310564.10:ENST00000415798.5:ENST00000431651.5:ENST00000451651.5:ENST00000418140.5:ENST00000448704.5:ENST00000470156.1:ENST00000457939.1:ENST00000420441.1:ENST00000478504.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	90	2	2.67068	2.8094099999999997	2.94814	0.00406276	0.00182605	0.0578984	0.0386492
chr12	22638142	22638241	5094872	0	+	0.414141	(0.408,0.44]	chr12	481224	121	INTRON	INTRON	ETNK1	ENSG00000139163.16	ENST00000671733.1:ENST00000335148.8:ENST00000672951.1:ENST00000266517.9:ENST00000538218.2:ENST00000673496.1:ENST00000673406.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	43	2	2.66579	2.809375	2.95296	0.019342	0.00929354	0.119831	0.0817766
chr6	108568223	108568323	2934218	0	+	0.42	(0.408,0.44]	chr6	276322	60	INTRON	INTRON	FOXO3	ENSG00000118689.15	ENST00000343882.10:ENST00000406360.2	protein_coding	protein_coding	protein_coding	protein_coding	2	43	2	2.66579	2.809375	2.95296	0.019342	0.00929354	0.119831	0.0817766
chr10	73713486	73713581	4651891	0	-	0.357895	(0.35,0.378]	chr10	428187	4	EXON_LNCRNA	EXON_LNCRNA:SS3_PROX:INTRON	BMS1P4:ENSG00000272140	ENSG00000271816.1:ENSG00000272140.2	ENST00000580790.1:ENST00000415917.2:ENST00000580623.1	lncRNA	lncRNA	lncRNA	lncRNA	5	99	2	2.43849	2.809265	3.18004	0.00430822	3.8703e-4	0.0578073	0.0177751
chr11	117244785	117244885	4869557	0	+	0.5	(0.476,0.515]	chr11	454505	2	SS5_PROX	SS5_PROX:INTRON	RNF214	ENSG00000167257.11	ENST00000300650.9:ENST00000529869.1:ENST00000531452.5:ENST00000531287.5:ENST00000530849.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	42	2	2.73205	2.8091749999999998	2.8863	0.0159328	0.0111679	0.109464	0.0877435
chr9	96965774	96965874	4298510	0	-	0.49	(0.476,0.515]	chr9	395256	65	INTRON	INTRON	MFSD14C	ENSG00000196312.15	ENST00000647176.1:ENST00000645073.1:ENST00000637076.1:ENST00000637099.1:ENST00000637864.1:ENST00000652726.1:ENST00000637811.1:ENST00000650909.1	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript:transcribed_unprocessed_pseudogene	2	42	2	2.73205	2.8091749999999998	2.8863	0.0159328	0.0111679	0.109464	0.0877435
chr17	30745358	30745457	6589941	0	+	0.535354	(0.515,0.57]	chr17	640860	16	INTRON	INTRON	SUZ12P1	ENSG00000264538.7	ENST00000578070.5:ENST00000579526.5:ENST00000690405.1:ENST00000497969.6:ENST00000578195.6:ENST00000582557.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	11	158	2	2.22725	2.80915	3.39105	9.24877e-4	3.43161e-6	0.0278396	0.00120545
chr12	96393298	96393397	5395214	0	-	0.383838	(0.378,0.408]	chr12	514463	581	INTRON	INTRON	CDK17	ENSG00000059758.8	ENST00000261211.8:ENST00000543119.6:ENST00000542666.5:ENST00000551816.5:ENST00000552496.5:ENST00000552262.1	protein_coding	protein_coding	protein_coding	protein_coding	6	111	2	2.15574	2.809125	3.46251	0.00519611	1.37139e-4	0.0654762	0.0106749
chr1	201963215	201963315	292419	0	+	0.53	(0.515,0.57]	chr1	33668	11	EXON_LNCRNA	EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TIMM17A	ENSG00000134375.11	ENST00000367287.5:ENST00000478378.5:ENST00000482943.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	163	2	2.66738	2.80907	2.95076	7.19154e-5	6.84086e-5	0.00762879	0.00684369
chr17	37274499	37274599	6761709	0	-	0.39	(0.378,0.408]	chr17	664899	2	SS3_PROX	SS3_PROX:INTRON	ACACA	ENSG00000278540.5	ENST00000616317.5:ENST00000614428.4:ENST00000612895.4:ENST00000617649.4:ENST00000613146.4:ENST00000615229.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	59	2	2.29798	2.80907	3.32016	0.0147606	0.00268328	0.106702	0.0464781
chr1	9541444	9541544	17152	0	+	0.54	(0.515,0.57]	chr1	1570	13	INTRON	INTRON	SLC25A33	ENSG00000171612.7	ENST00000302692.7	protein_coding	protein_coding	protein_coding	protein_coding	7	100	2	2.34569	2.80905	3.27241	0.0012338	1.80226e-4	0.0322271	0.0116696
chr15	22575614	22575714	5975358	0	+	0.41	(0.408,0.44]	chr15	568220	1	SS3_PROX	SS3_PROX:INTRON	HERC2P2	ENSG00000276550.5	ENST00000613386.4:ENST00000619021.4:ENST00000618651.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	7	116	2	2.05887	2.808985	3.5591	0.0056711	4.27819e-5	0.0653997	0.00529798
chr19	28501741	28501841	7166112	0	-	0.44	(0.408,0.44]	chr19	724189	335	INTRON	INTRON	ENSG00000283403:ENSG00000267243	ENSG00000283403.1:ENSG00000267243.6	ENST00000592347.5:ENST00000593065.5	lncRNA	lncRNA	lncRNA	lncRNA	6	86	2	2.05715	2.80886	3.56057	0.00463619	9.67143e-4	0.0628302	0.0282401
chr19	15293147	15293246	7147012	0	-	0.363636	(0.35,0.378]	chr19	721965	128	INTRON	INTRON	BRD4	ENSG00000141867.19	ENST00000679869.1:ENST00000360016.9:ENST00000594841.5:ENST00000597315.5:ENST00000601941.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	83	2	2.4077	2.808835	3.20997	0.0122026	3.32797e-4	0.0910127	0.0162254
chr19	46779108	46779208	7195325	0	-	0.61	(0.57,1]	chr19	728983	2	SS3_PROX	SS3_PROX:INTRON	SLC1A5	ENSG00000105281.12	ENST00000542575.6:ENST00000594991.5:ENST00000434726.6:ENST00000412532.6:ENST00000593713.1	protein_coding	protein_coding	protein_coding	protein_coding	4	40	2	2.73499	2.8087999999999997	2.88261	0.00237434	0.00118949	0.0438057	0.031662
chr1	42945719	42945819	433012	0	-	0.39	(0.378,0.408]	chr1	52495	20	INTRON	INTRON	SLC2A1	ENSG00000117394.24	ENST00000426263.10:ENST00000630287.2:ENST00000675112.1:ENST00000674765.1:ENST00000625233.2:ENST00000372500.4:ENST00000415851.6:ENST00000630821.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	58	2	2.61188	2.80878	3.00568	0.00811866	0.0047055	0.0766625	0.0631419
chr8	97693678	97693778	3809559	0	+	0.38	(0.378,0.408]	chr8	352866	21	INTRON	INTRON	MTDH	ENSG00000147649.10	ENST00000336273.8:ENST00000519934.5:ENST00000519293.1:ENST00000521933.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	58	2	2.61188	2.80878	3.00568	0.00811866	0.0047055	0.0766625	0.0631419
chr12	111461605	111461705	5411823	0	-	0.43	(0.408,0.44]	chr12	516814	3	SS3_PROX	SS3_PROX:INTRON	ATXN2	ENSG00000204842.18	ENST00000642389.2:ENST00000608853.5:ENST00000672613.1:ENST00000673436.1:ENST00000643669.2:ENST00000389154.7:ENST00000616825.4:ENST00000389153.10:ENST00000550104.5:ENST00000483311.6:ENST00000672335.1:ENST00000647445.1:ENST00000482777.5:ENST00000492467.6:ENST00000673557.1:ENST00000673283.1:ENST00000673273.1:ENST00000673449.1:ENST00000535949.5:ENST00000542287.6:ENST00000550844.2:ENST00000643474.1:ENST00000643694.1:ENST00000550889.5:ENST00000645162.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	37	2	1.49523	2.8085500000000003	4.12187	0.0534846	0.0354689	0.180041	0.137535
chr1	171501884	171501983	253378	0	+	0.333333	(0.32,0.35]	chr1	30096	158	INTRON	INTRON	PRRC2C	ENSG00000117523.18	ENST00000647382.2:ENST00000367742.7:ENST00000476522.5:ENST00000338920.8:ENST00000467601.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	235	2	2.75134	2.8085	2.86566	3.39814e-4	3.6284e-5	0.0170719	0.00482856
chr2	107700760	107700859	1205556	0	-	0.292929	(0.28,0.32]	chr2	128520	13	INTRON	INTRON	LINC01885:ENSG00000286769	ENSG00000237880.2:ENSG00000286769.1	ENST00000654481.1:ENST00000669817.1	lncRNA	lncRNA	lncRNA	lncRNA	8	182	2	2.64421	2.8085	2.97279	0.00116599	1.24146e-4	0.0312127	0.00952291
chr1	113758800	113758898	525423	0	-	0.489796	(0.476,0.515]	chr1	61819	2	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PHTF1	ENSG00000116793.16	ENST00000369604.6:ENST00000393357.6:ENST00000369600.5:ENST00000369598.5:ENST00000357783.6:ENST00000446739.1:ENST00000493212.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	56	2	2.31726	2.808325	3.29939	0.015077	0.00211868	0.0994339	0.0425644
chr6	126010326	126010424	2956306	0	+	0.367347	(0.35,0.378]	chr6	278028	5	INTRON	INTRON	TRMT11	ENSG00000066651.20	ENST00000479748.5:ENST00000368332.7:ENST00000648977.1:ENST00000468097.5:ENST00000334379.11:ENST00000466316.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	74	2	1.91706	2.80817	3.69928	0.026412	3.94786e-4	0.122506	0.0178567
chr1	21722641	21722736	396243	0	-	0.473684	(0.44,0.476]	chr1	47269	5	INTRON	INTRON	USP48	ENSG00000090686.16	ENST00000400301.5:ENST00000308271.14:ENST00000374732.7:ENST00000529637.5:ENST00000487880.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	116	2	2.11598	2.80816	3.50034	0.0035604	9.81771e-5	0.0548355	0.00893526
chr1	35097766	35097866	68096	0	+	0.52	(0.515,0.57]	chr1	8681	2	SS5_PROX	SS5_PROX:INTRON	ZMYM1	ENSG00000197056.11	ENST00000650449.1:ENST00000611874.4:ENST00000417119.5:ENST00000359858.9:ENST00000488455.5:ENST00000373330.1:ENST00000373329.5:ENST00000475654.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	49	2	2.08547	2.80816	3.53085	0.0289426	6.59951e-4	0.1274	0.0232396
chr4	151003710	151003810	2271656	0	-	0.52	(0.515,0.57]	chr4	220921	743	INTRON	INTRON	LRBA	ENSG00000198589.14	ENST00000357115.9:ENST00000651943.2:ENST00000510413.5:ENST00000651035.1:ENST00000507224.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	49	2	2.08547	2.80816	3.53085	0.0289426	6.59951e-4	0.1274	0.0232396
chr8	41662241	41662341	3937665	0	-	0.55	(0.515,0.57]	chr8	360895	3	SS3_PROX	SS3_PROX:INTRON	ANK1	ENSG00000029534.21	ENST00000347528.8:ENST00000265709.13:ENST00000289734.13:ENST00000522543.5:ENST00000522231.5:ENST00000520299.5:ENST00000314214.12:ENST00000645531.1:ENST00000518715.2:ENST00000348036.8:ENST00000524227.5:ENST00000335651.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	49	2	2.08547	2.80816	3.53085	0.0289426	6.59951e-4	0.1274	0.0232396
chr1	172579964	172580063	255176	0	+	0.363636	(0.35,0.378]	chr1	30433	3	INTRON	INTRON	SUCO	ENSG00000094975.14	ENST00000367723.8:ENST00000608151.5:ENST00000616058.4:ENST00000263688.4:ENST00000610051.5	protein_coding	protein_coding	protein_coding	protein_coding	2	46	2	2.39939	2.80808	3.21677	0.0458078	0.00313804	0.149888	0.0514466
chr12	68693879	68693977	5161917	0	+	0.357143	(0.35,0.378]	chr12	488671	14	INTRON	INTRON	NUP107	ENSG00000111581.10	ENST00000378905.6:ENST00000229179.9:ENST00000535333.5:ENST00000537598.5:ENST00000535718.5:ENST00000539906.5:ENST00000538549.1:ENST00000545140.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	46	2	2.39939	2.80808	3.21677	0.0458078	0.00313804	0.149888	0.0514466
chr8	54056916	54057014	3953424	0	-	0.367347	(0.35,0.378]	chr8	362605	14	INTRON	INTRON	LYPLA1	ENSG00000120992.18	ENST00000316963.8:ENST00000618914.4:ENST00000618741.1:ENST00000343231.10:ENST00000519272.5:ENST00000518546.5:ENST00000522007.5:ENST00000519891.5:ENST00000521352.5:ENST00000521898.5:ENST00000519926.5:ENST00000517297.5:ENST00000520896.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	46	2	2.39939	2.80808	3.21677	0.0458078	0.00313804	0.149888	0.0514466
chr7	129870429	129870528	3637141	0	-	0.515152	(0.476,0.515]	chr7	338202	50	INTRON	INTRON	UBE2H	ENSG00000186591.13	ENST00000355621.8:ENST00000649897.1:ENST00000473814.6:ENST00000496698.5:ENST00000472396.5:ENST00000480245.5:ENST00000486283.1:ENST00000490974.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	37	2	1.48023	2.808045	4.13586	0.0559072	0.031846	0.18407	0.13151
chr13	51959486	51959581	5596383	0	-	0.389474	(0.378,0.408]	chr13	534936	11	EXON_MRNA	EXON_MRNA:INTRON	ATP7B	ENSG00000123191.16	ENST00000242839.10:ENST00000344297.9:ENST00000674147.1:ENST00000634810.1:ENST00000448424.7:ENST00000634620.1:ENST00000634296.1:ENST00000400370.8:ENST00000634844.1:ENST00000673772.1:ENST00000634308.1:ENST00000418097.7:ENST00000400366.6:ENST00000635406.1:ENST00000482841.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	81	2	1.84831	2.8080249999999998	3.76774	0.0172621	4.21442e-4	0.111749	0.0189827
chr19	2205245	2205343	6996593	0	+	0.44898	(0.44,0.476]	chr19	693473	21	INTRON	INTRON	DOT1L	ENSG00000104885.19	ENST00000398665.8:ENST00000686010.1	protein_coding	protein_coding	protein_coding	protein_coding	4	75	2	2.67282	2.808015	2.94321	0.00433875	0.00111162	0.0579868	0.0305384
chr1	16341976	16342075	382515	0	-	0.525253	(0.515,0.57]	chr1	44888	262	INTRON	INTRON	FBXO42	ENSG00000037637.11	ENST00000375592.8	protein_coding	protein_coding	protein_coding	protein_coding	3	51	2	2.60899	2.80796	3.00693	0.0232669	7.26845e-4	0.118148	0.0245647
chr16	89593319	89593416	6421114	0	+	0.474227	(0.44,0.476]	chr16	616407	17	INTRON	INTRON	CPNE7	ENSG00000178773.15	ENST00000319518.13:ENST00000268720.9:ENST00000529800.5:ENST00000568977.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	142	2	2.25704	2.807945	3.35885	0.0018274	4.16949e-5	0.0396683	0.00547677
chr3	119461072	119461169	1791961	0	-	0.28866000000000003	(0.28,0.32]	chr3	179955	25	INTRON	INTRON	TMEM39A	ENSG00000176142.13	ENST00000319172.10:ENST00000438581.6:ENST00000491685.5:ENST00000486159.5:ENST00000486235.5:ENST00000468676.5:ENST00000490099.5:ENST00000497993.5:ENST00000482162.1:ENST00000461654.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	147	2	1.85484	2.807925	3.76101	0.00435403	6.8623e-4	0.0603078	0.0240041
chrX	44980303	44980403	7649676	0	+	0.33	(0.32,0.35]	chrX	782744	32	INTRON	INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000675440.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000621147.5:ENST00000475233.1:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	78	2	2.33698	2.80778	3.27858	0.00536261	0.00368368	0.0663076	0.0535094
chr10	67901986	67902086	4440576	0	+	0.52	(0.515,0.57]	chr10	409441	101	INTRON	INTRON	SIRT1	ENSG00000096717.12	ENST00000212015.11:ENST00000432464.5:ENST00000473922.1:ENST00000406900.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	93	2	2.79572	2.8077199999999998	2.81972	5.44499e-4	5.08572e-4	0.0215237	0.0202333
chr21	21488963	21489063	7383917	0	+	0.35	(0.32,0.35]	chr21	752699	111	INTRON	INTRON	NCAM2	ENSG00000154654.15	ENST00000400546.6:ENST00000284894.8	protein_coding	protein_coding	protein_coding	protein_coding	3	65	2	2.45306	2.807715	3.16237	0.00916394	0.00550276	0.0855292	0.0648867
chr1	174880698	174880798	264362	0	+	0.51	(0.476,0.515]	chr1	30911	27	INTRON	INTRON	RABGAP1L	ENSG00000152061.24	ENST00000251507.8:ENST00000681986.1:ENST00000529145.6:ENST00000325589.9:ENST00000469553.6:ENST00000367687.5:ENST00000347255.6:ENST00000489615.5:ENST00000478442.5:ENST00000465412.5:ENST00000486220.5:ENST00000392064.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	57	2	2.19809	2.807685	3.41728	0.020317	0.00165726	0.121522	0.0369207
chr15	81842955	81843055	6243733	0	-	0.51	(0.476,0.515]	chr15	595867	242	INTRON	INTRON	ENSG00000259692	ENSG00000259692.6	ENST00000559428.2:ENST00000560054.6:ENST00000560097.1:ENST00000559299.2	lncRNA	lncRNA	lncRNA	lncRNA	3	57	2	2.19809	2.807685	3.41728	0.020317	0.00165726	0.121522	0.0369207
chr5	133100336	133100428	2488502	0	+	0.402174	(0.378,0.408]	chr5	237558	3	INTRON	INTRON	HSPA4	ENSG00000170606.16	ENST00000304858.7	protein_coding	protein_coding	protein_coding	protein_coding	6	113	2	2.53753	2.807685	3.07784	0.00271682	1.31892e-4	0.0467523	0.00990163
chr7	107138653	107138752	3378110	0	+	0.515152	(0.476,0.515]	chr7	316264	100	INTRON	INTRON	PRKAR2B	ENSG00000005249.13	ENST00000265717.5:ENST00000393613.6:ENST00000488792.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	57	2	2.19809	2.807685	3.41728	0.020317	0.00165726	0.121522	0.0369207
chr3	194454792	194454892	1890871	0	-	0.37	(0.35,0.378]	chr3	189209	4	SS3_PROX	SS3_PROX:INTRON	ATP13A3	ENSG00000133657.17	ENST00000687055.1:ENST00000645538.1:ENST00000645319.2:ENST00000690810.1:ENST00000642744.2:ENST00000439040.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	136	2	2.34722	2.8076499999999998	3.26808	0.00312988	4.82138e-5	0.0499376	0.00567088
chr12	50114201	50114300	5135723	0	+	0.363636	(0.35,0.378]	chr12	484313	9	INTRON	INTRON	COX14:ENSG00000272368	ENSG00000178449.9:ENSG00000272368.2	ENST00000317943.6:ENST00000548468.2:ENST00000550654.1:ENST00000550487.6:ENST00000548985.1:ENST00000552815.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	2	46	2	2.72498	2.807505	2.89003	0.0168499	0.0122391	0.11068	0.0910127
chr7	128971000	128971092	3635724	0	-	0.402174	(0.378,0.408]	chr7	338034	3	INTRON	INTRON	TNPO3	ENSG00000064419.14	ENST00000627585.2:ENST00000265388.10:ENST00000471234.5:ENST00000482320.5:ENST00000471166.1	protein_coding	protein_coding	protein_coding	protein_coding	2	44	2	2.38873	2.80736	3.22599	0.0458857	0.00288652	0.149888	0.0494641
chr1	198167575	198167675	287760	0	+	0.41	(0.408,0.44]	chr1	33146	99	INTRON	INTRON	NEK7	ENSG00000151414.15	ENST00000442588.5:ENST00000367385.9:ENST00000538004.5:ENST00000367383.5	protein_coding	protein_coding	protein_coding	protein_coding	5	78	2	2.32619	2.8073550000000003	3.28852	0.00287185	0.00239266	0.0474836	0.0450826
chr16	9097193	9097293	6285427	0	+	0.5	(0.476,0.515]	chr16	601924	38	INTRON	INTRON	C16orf72	ENSG00000182831.12	ENST00000327827.12:ENST00000574285.2	protein_coding	protein_coding	protein_coding	protein_coding	3	59	2	2.73564	2.8072150000000002	2.87879	0.00999149	0.00333144	0.0879541	0.0512081
chr16	29608217	29608317	6471683	0	-	0.51	(0.476,0.515]	chr16	625301	134	INTRON	INTRON	ENSG00000288632	ENSG00000288632.1	ENST00000675579.1	lncRNA	lncRNA	lncRNA	lncRNA	3	59	2	2.73564	2.8072150000000002	2.87879	0.00999149	0.00333144	0.0879541	0.0512081
chr9	26865	26962	4226201	0	-	0.608247	(0.57,1]	chr9	388487	15	INTRON	INTRON	WASHC1	ENSG00000181404.18	ENST00000442898.5:ENST00000696149.1:ENST00000696150.1:ENST00000696151.1:ENST00000642633.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	55	2	2.53502	2.8072	3.07938	6.60462e-4	4.22401e-4	0.023462	0.0183838
chr15	80068490	80068590	6071121	0	+	0.52	(0.515,0.57]	chr15	578304	74	INTRON	INTRON	ZFAND6	ENSG00000086666.19	ENST00000613266.4:ENST00000561060.5:ENST00000559157.5:ENST00000261749.11:ENST00000561012.5:ENST00000564367.5:ENST00000558494.5:ENST00000618205.4:ENST00000560470.5	protein_coding	protein_coding	protein_coding	protein_coding	5	66	2	2.03368	2.8071599999999997	3.58064	0.00803127	6.54693e-4	0.0803474	0.0233335
chr4	57021495	57021573	1964378	0	+	0.410256	(0.408,0.44]	chr4	197188	1	INTRON	INTRON	POLR2B	ENSG00000047315.17	ENST00000381227.5:ENST00000431623.6:ENST00000441246.6:ENST00000314595.6:ENST00000478188.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	42	2	2.6542	2.8071349999999997	2.96007	0.0227514	0.00753901	0.117618	0.0773151
chr5	131529504	131529604	2718108	0	-	0.43	(0.408,0.44]	chr5	255585	76	INTRON	INTRON	RAPGEF6	ENSG00000158987.22	ENST00000509018.6:ENST00000507093.5:ENST00000296859.10:ENST00000627212.2:ENST00000308008.10:ENST00000515170.5:ENST00000510071.5:ENST00000514179.5:ENST00000513227.5:ENST00000504575.5:ENST00000504039.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	42	2	2.6542	2.8071349999999997	2.96007	0.0227514	0.00753901	0.117618	0.0773151
chr3	152311238	152311338	1535411	0	+	0.52	(0.515,0.57]	chr3	159996	89	INTRON	INTRON	MBNL1	ENSG00000152601.18	ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000495875.6:ENST00000324210.10:ENST00000493459.5:ENST00000459747.1:ENST00000460591.5:ENST00000545754.5:ENST00000357472.7:ENST00000324196.9:ENST00000498502.5:ENST00000463374.5:ENST00000485910.5:ENST00000465907.6:ENST00000492948.5:ENST00000485509.5:ENST00000464596.5	protein_coding	protein_coding	protein_coding	protein_coding	11	131	2	2.14262	2.8071099999999998	3.4716	6.11079e-4	7.76698e-5	0.0223951	0.00786812
chr12	91594632	91594732	5385163	0	-	0.32	(0.28,0.32]	chr12	513485	874	INTRON	INTRON	ENSG00000289605	ENSG00000289605.1	ENST00000685093.1	lncRNA	lncRNA	lncRNA	lncRNA	2	53	2	2.39347	2.807105	3.22074	0.0504457	0.00362783	0.156383	0.055479
chr4	99059582	99059680	2003364	0	+	0.306122	(0.28,0.32]	chr4	199883	14	INTRON	INTRON	METAP1	ENSG00000164024.12	ENST00000296411.11:ENST00000510133.5:ENST00000514051.1	protein_coding	protein_coding	protein_coding	protein_coding	2	53	2	2.39347	2.807105	3.22074	0.0504457	0.00362783	0.156383	0.055479
chr8	67091005	67091104	3776897	0	+	0.313131	(0.28,0.32]	chr8	350279	38	INTRON	INTRON	CSPP1	ENSG00000104218.16	ENST00000676113.1:ENST00000675306.2:ENST00000678156.1:ENST00000262210.11:ENST00000678017.1:ENST00000675869.1:ENST00000678542.1:ENST00000677619.1:ENST00000676605.1:ENST00000676471.1:ENST00000677256.1:ENST00000676847.1:ENST00000677009.1:ENST00000675820.1:ENST00000676317.1:ENST00000677592.1:ENST00000676573.1:ENST00000678318.1:ENST00000677473.1:ENST00000674993.1:ENST00000678553.1:ENST00000678927.1:ENST00000678204.1:ENST00000679226.1:ENST00000676882.1:ENST00000675955.1:ENST00000678728.1:ENST00000677430.1:ENST00000677455.1:ENST00000678616.1:ENST00000678362.1:ENST00000679112.1:ENST00000678645.1:ENST00000676567.1:ENST00000677845.1:ENST00000519701.5:ENST00000519163.6:ENST00000676858.1:ENST00000678747.1:ENST00000678821.1:ENST00000678744.1:ENST00000519668.1:ENST00000677276.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	53	2	2.39347	2.807105	3.22074	0.0504457	0.00362783	0.156383	0.055479
chr2	61386713	61386812	1129706	0	-	0.464646	(0.44,0.476]	chr2	121474	30	INTRON	INTRON	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000453133.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	90	2	2.76603	2.807015	2.848	0.00215274	6.78182e-4	0.0417866	0.0236375
chr7	67309915	67310015	3329160	0	+	0.39	(0.378,0.408]	chr7	309497	2	SS5_PROX	SS5_PROX:INTRON	STAG3L4	ENSG00000106610.16	ENST00000416602.6:ENST00000689067.1:ENST00000691248.1:ENST00000689978.1:ENST00000687534.1:ENST00000647855.1:ENST00000689458.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	3	60	2	2.66785	2.80699	2.94613	0.0224639	0.00112461	0.11692	0.0308177
chr18	32093186	32093286	6887272	0	+	0.65	(0.57,1]	chr18	682654	3	SS5_PROX	SS5_PROX:INTRON	RNF138	ENSG00000134758.14	ENST00000261593.8:ENST00000585103.5:ENST00000578914.1:ENST00000580519.1:ENST00000578107.5:ENST00000583733.1:ENST00000257190.9:ENST00000580499.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	32	2	2.05026	2.806975	3.56369	0.0321326	4.26536e-4	0.145026	0.0189958
chr2	235516929	235517029	1041564	0	+	0.61	(0.57,1]	chr2	111217	217	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	46	2	2.05009	2.80689	3.56369	0.00432938	4.26536e-4	0.0600206	0.0189958
chr2	157262829	157262929	896569	0	+	0.52	(0.515,0.57]	chr2	99276	29	INTRON	INTRON	GALNT5	ENSG00000136542.9	ENST00000259056.5	protein_coding	protein_coding	protein_coding	protein_coding	15	224	2	2.7185	2.80678	2.89506	3.45241e-5	1.01357e-5	0.00467863	0.00247779
chr9	92253844	92253941	4286924	0	-	0.381443	(0.378,0.408]	chr9	394155	5	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	IARS1	ENSG00000196305.19	ENST00000375643.7:ENST00000443024.7:ENST00000447699.7:ENST00000683537.1:ENST00000684726.1:ENST00000683192.1:ENST00000683565.1:ENST00000682756.1:ENST00000684542.1:ENST00000683793.1:ENST00000683817.1:ENST00000682141.1:ENST00000682893.1:ENST00000684557.1:ENST00000498025.2:ENST00000682156.1:ENST00000627121.3:ENST00000683469.1:ENST00000683495.1:ENST00000682578.1:ENST00000682533.1:ENST00000472894.2:ENST00000684757.1:ENST00000684445.1:ENST00000683376.1:ENST00000683679.1:ENST00000683119.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	25	400	2	2.44167	2.806725	3.17178	2.17224e-5	6.63145e-6	0.00362577	0.00194394
chr2	32008586	32008686	1091097	0	-	0.34	(0.32,0.35]	chr2	116913	454	INTRON	INTRON	MEMO1:DPY30	ENSG00000162959.14:ENSG00000162961.14	ENST00000295065.9:ENST00000446765.5:ENST00000404530.6:ENST00000490459.5:ENST00000426310.6:ENST00000413686.1:ENST00000407893.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	123	2	2.24224	2.8067	3.37116	0.00393422	2.88118e-4	0.0572563	0.015631
chr12	112409134	112409228	5417802	0	-	0.574468	(0.57,1]	chr12	517695	2	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPL6	ENSG00000089009.16	ENST00000202773.14:ENST00000424576.6:ENST00000546368.2:ENST00000550238.1:ENST00000551041.6:ENST00000552455.5:ENST00000550566.6:ENST00000549847.5:ENST00000551291.6:ENST00000553213.2:ENST00000549562.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	64	2	2.66199	2.80661	2.95123	8.39007e-4	1.30577e-4	0.0263691	0.0103941
chr9	123244159	123244259	4340237	0	-	0.36	(0.35,0.378]	chr9	398963	68	INTRON	INTRON	STRBP	ENSG00000165209.19	ENST00000348403.10:ENST00000360998.3:ENST00000407982.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	41	2	1.64283	2.806575	3.97032	0.0578667	0.034896	0.167723	0.148998
chr19	47176571	47176670	7084341	0	+	0.494949	(0.476,0.515]	chr19	708798	63	INTRON	INTRON	SAE1	ENSG00000142230.13	ENST00000413379.7:ENST00000270225.12:ENST00000598840.5:ENST00000414294.6:ENST00000660039.1:ENST00000664120.1:ENST00000596995.1:ENST00000392776.3:ENST00000659110.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	67	2	2.41328	2.806515	3.19975	0.00383299	0.00355364	0.0547657	0.0542786
chr22	18563921	18564021	7550991	0	-	0.42	(0.408,0.44]	chr22	771829	110	INTRON	INTRON	PI4KAP1	ENSG00000274602.5	ENST00000612500.4:ENST00000611748.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	6	109	2	2.62147	2.80647	2.99147	0.00180223	2.05062e-4	0.0382461	0.0124557
chr15	92977347	92977447	6104493	0	+	0.38	(0.378,0.408]	chr15	581523	20	INTRON	INTRON	CHD2	ENSG00000173575.22	ENST00000626874.2:ENST00000394196.9:ENST00000635856.1:ENST00000637572.1:ENST00000636881.1:ENST00000628118.1:ENST00000625463.1:ENST00000636306.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	78	2	2.66643	2.80628	2.94613	0.00470023	0.00112461	0.0600108	0.0308177
chr15	89627554	89627648	6097643	0	+	0.404255	(0.378,0.408]	chr15	580390	6	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	TICRR	ENSG00000140534.14	ENST00000268138.12:ENST00000560985.5:ENST00000561095.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	58	2	2.46345	2.806185	3.14892	0.00827342	0.00499984	0.0813266	0.0617433
chr16	89148060	89148159	6419780	0	+	0.383838	(0.378,0.408]	chr16	616099	6	EXON_MRNA	EXON_MRNA:INTRON	ACSF3	ENSG00000176715.17	ENST00000317447.9:ENST00000614302.5:ENST00000406948.7:ENST00000378345.8:ENST00000542688.5:ENST00000649953.1:ENST00000537116.5:ENST00000537155.1:ENST00000535176.1:ENST00000393145.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	58	2	2.46345	2.806185	3.14892	0.00827342	0.00499984	0.0813266	0.0617433
chr1	29149664	29149726	410110	0	-	0.370968	(0.35,0.378]	chr1	49380	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SRSF4	ENSG00000116350.18	ENST00000373795.7:ENST00000691479.1:ENST00000634348.1:ENST00000466448.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	87	2	2.52804	2.8061749999999996	3.08431	0.0065853	9.79034e-4	0.0701901	0.0287765
chr2	53948020	53948120	1120345	0	-	0.34	(0.32,0.35]	chr2	120091	2	SS5_PROX	SS5_PROX:INTRON	PSME4	ENSG00000068878.15	ENST00000404125.6:ENST00000389993.7:ENST00000481518.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	83	2	2.79707	2.8061350000000003	2.8152	0.0170923	6.37027e-4	0.104099	0.0228285
chr1	207763459	207763558	305017	0	+	0.585859	(0.57,1]	chr1	35105	3	INTRON	INTRON	CD46	ENSG00000117335.21	ENST00000695779.1:ENST00000695777.1:ENST00000695778.1:ENST00000496723.2:ENST00000695782.1:ENST00000695781.1:ENST00000695780.1:ENST00000636114.2:ENST00000367042.6:ENST00000322875.8:ENST00000322918.9:ENST00000354848.5:ENST00000357714.5:ENST00000358170.6:ENST00000367041.5:ENST00000367047.5:ENST00000695783.1:ENST00000695784.1:ENST00000469535.5:ENST00000360212.6:ENST00000480003.5:ENST00000695785.1:ENST00000464082.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	47	2	2.05295	2.806075	3.5592	0.00415403	4.21089e-4	0.0568824	0.0183576
chr12	96280042	96280141	5394052	0	-	0.343434	(0.32,0.35]	chr12	514355	19	UTR3	UTR3:EXON_MRNA	CDK17	ENSG00000059758.8	ENST00000261211.8	protein_coding	protein_coding	protein_coding	protein_coding	9	185	2	2.69711	2.8060099999999997	2.91491	7.57212e-4	6.37977e-5	0.0251942	0.00660941
chr6	157154904	157155003	3010959	0	+	0.353535	(0.35,0.378]	chr6	281189	7	INTRON	INTRON	ARID1B	ENSG00000049618.24	ENST00000346085.10:ENST00000636930.2:ENST00000647938.1:ENST00000350026.10:ENST00000414678.7:ENST00000319584.11:ENST00000635849.1:ENST00000637904.1:ENST00000637810.1:ENST00000637015.1:ENST00000636426.1:ENST00000637568.1:ENST00000635957.1:ENST00000400790.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	62	2	1.98929	2.806005	3.62272	0.0417909	5.64719e-4	0.147075	0.021704
chr7	139402447	139402547	3438024	0	+	0.3	(0.28,0.32]	chr7	320352	2	SS5_PROX	SS5_PROX:INTRON	LUC7L2:FMC1-LUC7L2	ENSG00000146963.18:ENSG00000269955.2	ENST00000541170.7:ENST00000541515.3:ENST00000619796.4:ENST00000354926.9:ENST00000456182.5:ENST00000263545.7:ENST00000463912.5:ENST00000498518.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	196	2	2.04207	2.805975	3.56988	0.0121395	3.45134e-6	0.0910127	0.00120859
chr7	152360274	152360374	3680536	0	-	0.47	(0.44,0.476]	chr7	341660	12	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000682301.1:ENST00000452749.2:ENST00000680867.1:ENST00000683800.1:ENST00000684278.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	56	2	2.39003	2.805975	3.22192	0.0106488	0.00360821	0.0915714	0.0533855
chr22	21976981	21977080	7561969	0	-	0.424242	(0.408,0.44]	chr22	773552	4	INTRON	INTRON	TOP3B	ENSG00000100038.20	ENST00000357179.10:ENST00000457179.5:ENST00000444502.5:ENST00000398793.6:ENST00000424393.5:ENST00000437929.5:ENST00000430142.5:ENST00000456075.5:ENST00000449704.5:ENST00000437103.1:ENST00000434517.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	139	2	2.38209	2.80593	3.22977	0.0013549	5.1576e-5	0.0336321	0.00585477
chr10	97264227	97264325	4674876	0	-	0.428571	(0.408,0.44]	chr10	430803	2	INTRON	INTRON	ARHGAP19	ENSG00000213390.11	ENST00000492211.5:ENST00000358308.7:ENST00000358531.9:ENST00000371027.5:ENST00000466484.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	42	2	2.58624	2.805685	3.02513	0.0273686	0.0059965	0.123904	0.0700606
chr11	68601178	68601270	4818769	0	+	0.413043	(0.408,0.44]	chr11	449050	3	INTRON	INTRON	PPP6R3	ENSG00000110075.15	ENST00000534534.5:ENST00000524845.5:ENST00000393800.7:ENST00000265637.8:ENST00000524904.5:ENST00000393801.7:ENST00000265636.9:ENST00000529710.5:ENST00000527403.6:ENST00000534190.5:ENST00000526307.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	42	2	2.58624	2.805685	3.02513	0.0273686	0.0059965	0.123904	0.0700606
chr3	172760849	172760936	1563317	0	+	0.517241	(0.515,0.57]	chr3	161745	2	INTRON	INTRON	ECT2	ENSG00000114346.14	ENST00000232458.9:ENST00000540509.5:ENST00000392692.8:ENST00000417960.5:ENST00000428567.5:ENST00000441497.6	protein_coding	protein_coding	protein_coding	protein_coding	4	70	2	2.08547	2.805685	3.5259	0.0289426	4.10167e-5	0.1274	0.00519615
chr7	34937793	34937893	3516701	0	-	0.44	(0.408,0.44]	chr7	327952	51	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	DPY19L1	ENSG00000173852.16	ENST00000690503.1:ENST00000685246.1:ENST00000690666.1:ENST00000612226.2:ENST00000688296.1:ENST00000310974.8:ENST00000638088.2:ENST00000428054.1:ENST00000687726.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	42	2	2.58624	2.805685	3.02513	0.0273686	0.0059965	0.123904	0.0700606
chr1	215582554	215582652	314337	0	+	0.489796	(0.476,0.515]	chr1	36233	15	INTRON	INTRON	KCTD3	ENSG00000136636.13	ENST00000259154.9	protein_coding	protein_coding	protein_coding	protein_coding	3	56	2	2.365	2.80565	3.2463	0.0128901	0.00262374	0.0926667	0.0470772
chr10	35350386	35350486	4424641	0	+	0.33	(0.32,0.35]	chr10	407899	128	INTRON	INTRON	CCNY	ENSG00000108100.18	ENST00000374706.5:ENST00000490012.6:ENST00000493157.6:ENST00000374704.8:ENST00000265375.13:ENST00000339497.7:ENST00000492478.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	49	2	2.37794	2.805625	3.23331	0.0498601	0.00315414	0.156383	0.0515261
chr1	229537468	229537567	653554	0	-	0.434343	(0.408,0.44]	chr1	77458	24	INTRON	INTRON	ABCB10	ENSG00000135776.5	ENST00000344517.5	protein_coding	protein_coding	protein_coding	protein_coding	3	59	2	1.81572	2.80553	3.79534	0.0626779	2.17043e-4	0.175915	0.0129235
chr1	27442922	27443022	406292	0	-	0.43	(0.408,0.44]	chr1	48986	136	INTRON	INTRON	WASF2	ENSG00000158195.11	ENST00000618852.5:ENST00000536657.1	protein_coding	protein_coding	protein_coding	protein_coding	2	42	2	2.71911	2.80552	2.89193	0.0189489	0.00950364	0.108861	0.0863579
chr14	102167305	102167405	5821557	0	+	0.44	(0.408,0.44]	chr14	552339	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	WDR20	ENSG00000140153.18	ENST00000557485.5:ENST00000335263.9:ENST00000424963.6:ENST00000322340.9:ENST00000556807.1:ENST00000555879.5:ENST00000561154.1:ENST00000342702.8:ENST00000558567.5:ENST00000299135.6:ENST00000454394.2:ENST00000556094.1:ENST00000556511.2:ENST00000557186.5:ENST00000558854.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	42	2	2.71911	2.80552	2.89193	0.0189489	0.00950364	0.108861	0.0863579
chr15	72500045	72500145	6059418	0	+	0.41	(0.408,0.44]	chr15	576858	28	INTRON	INTRON	ARIH1	ENSG00000166233.15	ENST00000379887.9:ENST00000570085.5:ENST00000564062.1:ENST00000567762.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	42	2	2.71911	2.80552	2.89193	0.0189489	0.00950364	0.108861	0.0863579
chr9	7108196	7108296	4103690	0	+	0.43	(0.408,0.44]	chr9	373794	23	INTRON	INTRON	KDM4C	ENSG00000107077.19	ENST00000381306.7:ENST00000381309.8:ENST00000428870.6:ENST00000420847.2:ENST00000490806.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	42	2	2.71911	2.80552	2.89193	0.0189489	0.00950364	0.108861	0.0863579
chr22	19491743	19491842	7476954	0	+	0.484848	(0.476,0.515]	chr22	762407	74	INTRON	INTRON	CDC45	ENSG00000093009.11	ENST00000407835.6:ENST00000437685.6:ENST00000483431.5:ENST00000438587.6:ENST00000672837.1:ENST00000263201.7:ENST00000404724.7:ENST00000487669.5:ENST00000428937.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	125	2	2.48917	2.805495	3.12182	0.00110233	1.47828e-4	0.03038	0.0111067
chr1	171573655	171573751	254121	0	+	0.416667	(0.408,0.44]	chr1	30226	19	INTRON	INTRON	PRRC2C	ENSG00000117523.18	ENST00000647382.2:ENST00000367742.7:ENST00000338920.8:ENST00000426496.6:ENST00000495585.1:ENST00000644916.1	protein_coding	protein_coding	protein_coding	protein_coding	3	57	2	2.40661	2.80549	3.20437	0.011475	0.00306596	0.0888882	0.0509893
chr2	144505326	144505423	1241661	0	-	0.360825	(0.35,0.378]	chr2	131745	3	INTRON	INTRON	ZEB2	ENSG00000169554.23	ENST00000636471.1:ENST00000627532.3:ENST00000638128.1:ENST00000637304.1:ENST00000636179.1:ENST00000419938.5:ENST00000409487.7:ENST00000636732.2:ENST00000636026.2:ENST00000675069.1:ENST00000689298.1:ENST00000539609.7:ENST00000558170.6:ENST00000303660.8:ENST00000427902.5:ENST00000637267.2:ENST00000392861.6:ENST00000431672.4:ENST00000409211.5:ENST00000465308.5:ENST00000434448.5:ENST00000472146.5:ENST00000461784.3:ENST00000476394.5:ENST00000637591.2:ENST00000479735.1:ENST00000453352.5:ENST00000435831.5:ENST00000444559.5:ENST00000630572.2:ENST00000484313.3:ENST00000629955.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	61	2	2.72093	2.80548	2.89003	0.0122391	0.00314173	0.0910127	0.0514466
chr5	139584080	139584180	2500731	0	+	0.41	(0.408,0.44]	chr5	239026	213	INTRON	INTRON	UBE2D2	ENSG00000131508.16	ENST00000511725.5:ENST00000505007.5:ENST00000398733.8:ENST00000510470.1:ENST00000398734.8:ENST00000505548.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	77	2	2.12303	2.80548	3.48793	0.00586883	0.00130904	0.0690758	0.0331539
chr17	74207244	74207340	6672410	0	+	0.53125	(0.515,0.57]	chr17	651050	11	INTRON	INTRON	RPL38	ENSG00000172809.13	ENST00000439590.6:ENST00000311111.11:ENST00000584577.5:ENST00000534490.5:ENST00000533498.1	protein_coding	protein_coding	protein_coding	protein_coding	3	52	2	1.94945	2.8054799999999998	3.66151	0.0414068	4.49566e-4	0.161557	0.0196044
chr5	54029008	54029108	2618094	0	-	0.32	(0.28,0.32]	chr5	248835	1170	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	127	2	1.7781	2.805465	3.83283	0.00932885	5.10252e-4	0.0856412	0.020816
chr6	34309977	34310077	3083946	0	-	0.5	(0.476,0.515]	chr6	288627	139	INTRON	INTRON	NUDT3:RPS10-NUDT3	ENSG00000272325.2:ENSG00000270800.3	ENST00000607016.2:ENST00000639725.1:ENST00000639877.1:ENST00000605528.2	protein_coding	protein_coding	protein_coding	protein_coding	4	68	2	1.79187	2.805405	3.81894	0.0362169	1.96038e-4	0.138959	0.0122528
chr14	21247950	21248050	5834951	0	-	0.41	(0.408,0.44]	chr14	554459	111	INTRON	INTRON	HNRNPC	ENSG00000092199.19	ENST00000336053.10:ENST00000553300.6:ENST00000554969.5:ENST00000556142.5:ENST00000554455.5:ENST00000430246.6:ENST00000553753.5:ENST00000555309.5:ENST00000555914.5:ENST00000557442.5:ENST00000556628.5:ENST00000556513.5:ENST00000555883.5:ENST00000557201.5:ENST00000556897.5:ENST00000420743.6:ENST00000554539.5:ENST00000554383.5:ENST00000555215.5:ENST00000555137.5:ENST00000554891.5:ENST00000556226.5:ENST00000555176.5:ENST00000553614.5:ENST00000557336.1:ENST00000557768.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	192	2	2.53317	2.805305	3.07744	3.91894e-4	1.56624e-5	0.0184748	0.00298688
chr2	44358028	44358125	1111075	0	-	0.319588	(0.28,0.32]	chr2	119236	13	INTRON	INTRON	PREPL	ENSG00000138078.16	ENST00000425263.5:ENST00000409411.6:ENST00000426481.5:ENST00000541738.5:ENST00000409957.5:ENST00000409936.5:ENST00000409272.5:ENST00000260648.10:ENST00000410081.5:ENST00000378520.7:ENST00000378511.7:ENST00000540817.1:ENST00000438314.1:ENST00000477410.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	71	2	2.25939	2.8052349999999997	3.35108	0.021772	0.00221345	0.11491	0.0435144
chr18	12963871	12963935	6876318	0	+	0.40625	(0.378,0.408]	chr18	681289	1	INTRON	INTRON	SEH1L	ENSG00000085415.16	ENST00000262124.15:ENST00000399892.7:ENST00000585730.5:ENST00000589446.5:ENST00000587761.1:ENST00000588251.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	107	2	2.59919	2.805225	3.01126	0.00115997	6.41208e-4	0.0311664	0.0228915
chr8	129964648	129964748	4063412	0	-	0.54	(0.515,0.57]	chr8	369838	152	INTRON	INTRON	CYRIB	ENSG00000153310.21	ENST00000694912.1:ENST00000523288.5:ENST00000519110.5:ENST00000401979.6:ENST00000523509.5:ENST00000517654.5:ENST00000519142.5:ENST00000518879.5:ENST00000522702.5:ENST00000521223.5:ENST00000518283.5:ENST00000523993.5:ENST00000519020.5:ENST00000518167.5:ENST00000517672.5:ENST00000522361.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	66	2	1.9888	2.8052200000000003	3.62164	0.00963364	5.41944e-4	0.086971	0.0215026
chr9	122276953	122277053	4194230	0	+	0.52	(0.515,0.57]	chr9	382675	55	INTRON	INTRON	MRRF	ENSG00000148187.18	ENST00000297908.7:ENST00000344641.8:ENST00000441707.5:ENST00000373723.9:ENST00000373729.5:ENST00000373728.6:ENST00000373727.5:ENST00000470366.5:ENST00000373724.1:ENST00000467864.5:ENST00000489572.5:ENST00000394315.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	66	2	1.9888	2.8052200000000003	3.62164	0.00963364	5.41944e-4	0.086971	0.0215026
chr16	2516559	2516657	6278685	0	+	0.55102	(0.515,0.57]	chr16	600551	18	INTRON	INTRON	ATP6V0C	ENSG00000185883.12	ENST00000330398.9:ENST00000568562.1:ENST00000565223.1	protein_coding	protein_coding	protein_coding	protein_coding	2	38	2	2.23915	2.8052	3.37125	0.0596178	0.00136343	0.16883600000000001	0.0339121
chr18	164341	164439	6854884	0	+	0.346939	(0.32,0.35]	chr18	679502	5	INTRON	INTRON	USP14	ENSG00000101557.15	ENST00000582707.5:ENST00000400266.7:ENST00000261601.8:ENST00000578942.5:ENST00000383589.6:ENST00000583119.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	42	2	1.54741	2.8052	4.06299	0.0559439	0.0473733	0.169265	0.165463
chr7	152368968	152369068	3680623	0	-	0.39	(0.378,0.408]	chr7	341660	99	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000682301.1:ENST00000452749.2:ENST00000680867.1:ENST00000683800.1:ENST00000684278.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	133	2	2.06872	2.8050949999999997	3.54147	0.00895678	7.65923e-6	0.0800073	0.00197346
chr3	183986895	183986991	1882310	0	-	0.270833	[0,0.28]	chr3	188197	16	UTR3	UTR3:EXON_MRNA:INTRON	ABCC5	ENSG00000114770.17	ENST00000334444.11:ENST00000265586.10:ENST00000437205.5:ENST00000382494.6:ENST00000392579.6:ENST00000443376.5:ENST00000427120.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	203	2	2.77895	2.8048900000000003	2.83083	0.00150593	2.41942e-4	0.0352794	0.0137034
chr12	66167620	66167719	5352846	0	-	0.373737	(0.35,0.378]	chr12	511479	61	INTRON	INTRON	TMBIM4	ENSG00000155957.19	ENST00000358230.8:ENST00000544599.5:ENST00000398033.8:ENST00000633367.1:ENST00000286424.12:ENST00000545407.5:ENST00000542724.5:ENST00000545504.1:ENST00000534930.1:ENST00000542072.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	73	2	2.39519	2.804875	3.21456	0.00420814	0.00401951	0.0578189	0.0572185
chr7	105036425	105036525	3374840	0	+	0.48	(0.476,0.515]	chr7	315854	215	INTRON	INTRON	KMT2E	ENSG00000005483.22	ENST00000622386.2:ENST00000257745.9:ENST00000334884.9:ENST00000311117.8:ENST00000478990.5:ENST00000480368.5:ENST00000495267.5:ENST00000476671.5:ENST00000667857.1:ENST00000474203.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	47	2	1.36472	2.804865	4.24501	0.0467985	0.0247713	0.167716	0.12011
chr21	39300876	39300976	7465415	0	-	0.45	(0.44,0.476]	chr21	760568	19	INTRON	INTRON	BRWD1	ENSG00000185658.14	ENST00000333229.6:ENST00000342449.8:ENST00000380800.7:ENST00000341322.4:ENST00000470108.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	99	2	2.34296	2.804825	3.26669	0.00305435	7.10457e-4	0.0493883	0.0242715
chr7	44830944	44831038	3528507	0	-	0.468085	(0.44,0.476]	chr7	329101	4	INTRON	INTRON	H2AZ2	ENSG00000105968.19	ENST00000222690.10:ENST00000437072.5	protein_coding	protein_coding	protein_coding	protein_coding	15	259	2	2.73037	2.804825	2.87928	5.42251e-5	1.5956e-5	0.00650124	0.00301858
chr1	51764731	51764829	100892	0	+	0.44898	(0.44,0.476]	chr1	13345	24	INTRON	INTRON	OSBPL9	ENSG00000117859.19	ENST00000371714.5:ENST00000428468.6:ENST00000447887.5:ENST00000495776.5:ENST00000435274.6:ENST00000453295.5:ENST00000489990.5:ENST00000532975.5:ENST00000531828.5:ENST00000361556.9:ENST00000526917.5:ENST00000462759.5:ENST00000486942.5:ENST00000528603.5:ENST00000475697.5:ENST00000531061.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	43	2	2.29842	2.80476	3.3111	0.0552483	0.0020006	0.165463	0.0412555
chr22	21831136	21831236	7561021	0	-	0.47	(0.44,0.476]	chr22	773388	229	INTRON	INTRON	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	4	67	2	2.1762	2.804625	3.43305	0.0092251	0.00159668	0.0855292	0.0364566
chr19	29966122	29966221	7047793	0	+	0.424242	(0.408,0.44]	chr19	702663	77	INTRON	INTRON	URI1	ENSG00000105176.18	ENST00000360605.8:ENST00000570564.5:ENST00000574233.5:ENST00000392271.6:ENST00000574110.5:ENST00000574666.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	77	2	2.15894	2.804565	3.45019	0.00504142	0.00152664	0.0646039	0.0353936
chr7	140875196	140875296	3663238	0	-	0.28	[0,0.28]	chr7	340105	246	INTRON	INTRON	BRAF	ENSG00000157764.14	ENST00000496384.7:ENST00000644969.2:ENST00000646891.1:ENST00000644905.1:ENST00000642228.1:ENST00000288602.11:ENST00000646730.1:ENST00000497784.2:ENST00000642272.1:ENST00000642808.1:ENST00000643790.1:ENST00000469930.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	60	2	2.74901	2.804545	2.86008	0.0188843	0.0177015	0.118148	0.105304
chr10	45995127	45995227	4430613	0	+	0.32	(0.28,0.32]	chr10	408492	59	INTRON	INTRON	TIMM23	ENSG00000265354.4	ENST00000580018.4	protein_coding	protein_coding	protein_coding	protein_coding	6	133	2	2.33674	2.804475	3.27221	0.00413289	3.15212e-4	0.0566868	0.0159645
chr6	35372123	35372223	2852274	0	+	0.38	(0.378,0.408]	chr6	269491	246	INTRON	INTRON	PPARD	ENSG00000112033.14	ENST00000418635.6:ENST00000448077.6:ENST00000360694.8:ENST00000311565.4:ENST00000337400.6	protein_coding	protein_coding	protein_coding	protein_coding	10	149	2	2.12607	2.8044149999999997	3.48276	0.00110813	1.23627e-4	0.0305035	0.0100054
chr17	59636406	59636505	6641728	0	+	0.373737	(0.35,0.378]	chr17	648527	159	INTRON	INTRON	CLTC	ENSG00000141367.12	ENST00000621829.4:ENST00000393043.5:ENST00000269122.8:ENST00000580081.1:ENST00000579456.5:ENST00000584313.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	47	2	2.57049	2.804315	3.03814	0.0262669	0.00767003	0.133676	0.075364
chr17	19063542	19063641	6740850	0	-	0.656566	(0.57,1]	chr17	661756	3	EXON_SMALL	EXON_SMALL	SNORD3B-2	ENSG00000262074.7	ENST00000571722.3	snoRNA	snoRNA	snoRNA	snoRNA	8	99	2	1.98953	2.804255	3.61898	0.0182848	6.25644e-8	0.115629	1.04254e-4
chr15	88900211	88900311	6256700	0	-	0.45	(0.44,0.476]	chr15	596860	4	SS3_PROX	SS3_PROX:INTRON	MFGE8	ENSG00000140545.16	ENST00000268150.13:ENST00000558018.5:ENST00000558029.6:ENST00000695566.1:ENST00000268151.11:ENST00000566497.5:ENST00000695774.1:ENST00000560937.1:ENST00000542878.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	205	2	2.66044	2.804125	2.94781	6.77244e-5	6.60958e-5	0.0071649	0.00682191
chr16	88747194	88747293	6539841	0	-	0.545455	(0.515,0.57]	chr16	633992	44	INTRON	INTRON	PIEZO1	ENSG00000103335.22	ENST00000301015.14	protein_coding	protein_coding	protein_coding	protein_coding	11	162	2	2.77494	2.8041	2.83326	8.26788e-5	4.23055e-5	0.00812487	0.00526976
chr1	226062869	226062948	327766	0	+	0.658228	(0.57,1]	chr1	37736	3	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	H3-3A	ENSG00000163041.13	ENST00000366816.5:ENST00000366814.3:ENST00000366815.10:ENST00000653960.1:ENST00000655399.1:ENST00000667897.1:ENST00000656829.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	50	2	1.69018	2.804055	3.91793	0.0143258	5.86096e-5	0.104177	0.00668534
chr3	170892370	170892469	1863214	0	-	0.424242	(0.408,0.44]	chr3	186761	41	UTR3	UTR3:EXON_MRNA	EIF5A2	ENSG00000163577.8	ENST00000295822.7	protein_coding	protein_coding	protein_coding	protein_coding	3	56	2	2.55103	2.8040399999999996	3.05705	0.00658331	0.00587353	0.0701901	0.0690758
chr6	89780111	89780211	3161630	0	-	0.34	(0.32,0.35]	chr6	294834	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	MDN1	ENSG00000112159.12	ENST00000369393.8:ENST00000629399.2:ENST00000439638.1	protein_coding	protein_coding	protein_coding	protein_coding	3	65	2	2.71053	2.80398	2.89743	0.0127608	0.00346747	0.0926667	0.0539802
chr8	94423315	94423415	3992932	0	-	0.46	(0.44,0.476]	chr8	365518	116	INTRON	INTRON	RAD54B:FSBP	ENSG00000197275.14:ENSG00000265817.4	ENST00000336148.10:ENST00000517506.2:ENST00000463267.5:ENST00000518998.5:ENST00000523839.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	43	2	2.58033	2.8039199999999997	3.02751	0.0247511	0.00715968	0.131869	0.0723634
chr7	100689084	100689178	3587498	0	-	0.606383	(0.57,1]	chr7	334640	10	UTR5	UTR5:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GIGYF1	ENSG00000146830.11	ENST00000678049.1:ENST00000646601.1:ENST00000275732.5:ENST00000643385.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	101	2	2.64388	2.8038049999999997	2.96373	1.46112e-4	6.43964e-6	0.0105174	0.00192316
chr11	87073012	87073112	4843163	0	+	0.43	(0.408,0.44]	chr11	451850	10	INTRON	INTRON	TMEM135	ENSG00000166575.17	ENST00000340353.11:ENST00000529023.5:ENST00000526733.5:ENST00000305494.6:ENST00000532959.5:ENST00000525018.5:ENST00000531800.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	76	2	2.78289	2.80375	2.82461	0.00241819	0.0022785	0.0442901	0.0437013
chr10	17442268	17442368	4568895	0	-	0.33	(0.32,0.35]	chr10	421387	513	INTRON	INTRON	ST8SIA6	ENSG00000148488.17	ENST00000377602.5:ENST00000648997.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	65	2	2.4053	2.80373	3.20216	0.0108284	0.00480708	0.0920575	0.0602209
chr3	49398331	49398431	1693926	0	-	0.35	(0.32,0.35]	chr3	173707	224	INTRON	INTRON	RHOA	ENSG00000067560.14	ENST00000678200.1:ENST00000422781.6:ENST00000676712.2:ENST00000678921.2:ENST00000445425.6:ENST00000454011.7:ENST00000418115.6:ENST00000679208.1:ENST00000677684.1:ENST00000431929.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	89	2	2.0893	2.80369	3.51808	0.00738971	0.00151238	0.0769106	0.0352794
chr11	62573842	62573891	4959603	0	-	0.612245	(0.57,1]	chr11	466268	1	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	EEF1G	ENSG00000254772.10	ENST00000329251.5:ENST00000525340.5:ENST00000532986.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	16	140	2	2.78443	2.8035300000000003	2.82263	6.98674e-6	4.65076e-6	0.00198457	0.00144728
chr6	143678409	143678509	2979847	0	+	0.46	(0.44,0.476]	chr6	279270	2	SS5_PROX	SS5_PROX:INTRON	PHACTR2	ENSG00000112419.15	ENST00000367584.8:ENST00000427704.6:ENST00000305766.10:ENST00000440869.7:ENST00000367582.7:ENST00000402863.3:ENST00000451827.6:ENST00000542769.5:ENST00000397980.3:ENST00000545919.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	42	2	2.46135	2.80347	3.14559	0.0374637	0.00384923	0.140008	0.0562562
chr9	35712430	35712527	4248120	0	-	0.474227	(0.44,0.476]	chr9	391099	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TLN1	ENSG00000137076.21	ENST00000314888.10	protein_coding	protein_coding	protein_coding	protein_coding	2	42	2	2.46135	2.80347	3.14559	0.0374637	0.00384923	0.140008	0.0562562
chr9	98076231	98076331	4173573	0	+	0.46	(0.44,0.476]	chr9	380323	17	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	NANS	ENSG00000095380.11	ENST00000210444.6:ENST00000495319.1:ENST00000461452.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	42	2	2.46135	2.80347	3.14559	0.0374637	0.00384923	0.140008	0.0562562
chr2	167922133	167922233	1259024	0	-	0.3	(0.28,0.32]	chr2	133340	210	INTRON	INTRON	B3GALT1-AS1	ENSG00000235335.3	ENST00000430546.2:ENST00000657553.1:ENST00000670221.1:ENST00000436982.2	lncRNA	lncRNA	lncRNA	lncRNA	9	192	2	2.542	2.80344	3.06488	3.95846e-4	3.60938e-4	0.0185763	0.0169545
chr10	124777275	124777375	4712401	0	-	0.31	(0.28,0.32]	chr10	434817	21	INTRON	INTRON	EEF1AKMT2	ENSG00000203791.15	ENST00000652548.1:ENST00000466270.5:ENST00000368836.7:ENST00000464099.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	71	2	2.77917	2.80343	2.82769	0.0169391	0.00285651	0.103888	0.0494641
chr6	17650374	17650470	3065636	0	-	0.4375	(0.408,0.44]	chr6	284818	7	INTRON	INTRON	NUP153	ENSG00000124789.12	ENST00000613258.4:ENST00000537253.5:ENST00000262077.3	protein_coding	protein_coding	protein_coding	protein_coding	7	117	2	2.65567	2.803275	2.95088	0.00142252	2.17278e-4	0.0340865	0.0129235
chr2	112650481	112650579	852108	0	+	0.510204	(0.476,0.515]	chr2	95574	24	INTRON	INTRON	SLC20A1	ENSG00000144136.11	ENST00000272542.8:ENST00000423633.5:ENST00000498224.5:ENST00000433924.5:ENST00000456264.5:ENST00000413135.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	126	2	2.79431	2.803225	2.81214	5.41922e-4	3.09781e-4	0.0211086	0.0162047
chr5	62522560	62522659	2364128	0	+	0.424242	(0.408,0.44]	chr5	227967	67	INTRON	INTRON	IPO11	ENSG00000086200.17	ENST00000424533.5:ENST00000325324.11:ENST00000409296.7:ENST00000502862.1:ENST00000511713.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	56	2	2.60048	2.803215	3.00595	0.00781452	0.00484324	0.0759016	0.0640618
chr8	127996460	127996560	3862092	0	+	0.44	(0.408,0.44]	chr8	355500	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	PVT1	ENSG00000249859.13	ENST00000667305.1:ENST00000690350.1:ENST00000653522.1:ENST00000661830.1:ENST00000657289.1:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000656880.1:ENST00000660200.1:ENST00000657211.1:ENST00000653845.1:ENST00000517525.2:ENST00000651587.1:ENST00000692980.1:ENST00000666353.1:ENST00000654324.1:ENST00000657693.1:ENST00000666080.1:ENST00000667539.1:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000664293.1:ENST00000662410.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000654091.1:ENST00000657356.1:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000662061.1:ENST00000656491.1:ENST00000667714.1:ENST00000654105.1:ENST00000660438.1:ENST00000659326.1:ENST00000666842.1:ENST00000517790.2:ENST00000654369.1:ENST00000664995.1:ENST00000656532.1:ENST00000661988.1:ENST00000670714.1:ENST00000669951.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000668123.1:ENST00000666776.1:ENST00000664299.1:ENST00000659912.1:ENST00000670532.1:ENST00000660896.1:ENST00000523068.2:ENST00000519481.6:ENST00000669082.1:ENST00000671088.1:ENST00000670204.1:ENST00000652695.1:ENST00000517838.6:ENST00000663461.1:ENST00000513868.6:ENST00000670626.1:ENST00000692433.1:ENST00000523190.7:ENST00000685606.1:ENST00000690788.1:ENST00000685634.1:ENST00000689722.1:ENST00000653990.1:ENST00000655783.1:ENST00000656411.1:ENST00000664742.1:ENST00000655099.1:ENST00000662709.1:ENST00000512617.7:ENST00000660122.1:ENST00000666452.1:ENST00000659666.1:ENST00000659892.1:ENST00000521600.5:ENST00000522875.5:ENST00000653497.1	lncRNA	lncRNA	lncRNA	lncRNA	3	56	2	2.49983	2.80312	3.10641	0.00713527	0.00555646	0.0756118	0.0648867
chr8	31061236	31061334	3728209	0	+	0.316327	(0.28,0.32]	chr8	346535	16	INTRON	INTRON	WRN	ENSG00000165392.11	ENST00000650667.1:ENST00000298139.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	176	2	2.48246	2.803105	3.12375	0.00104535	3.27175e-4	0.0294493	0.0160995
chr16	23873414	23873514	6324134	0	+	0.47	(0.44,0.476]	chr16	605697	42	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000645517.1:ENST00000498739.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	173	2	1.85038	2.8030549999999996	3.75573	0.00545325	1.63478e-6	0.0647375	7.74132e-4
chr17	27487646	27487746	6581079	0	+	0.46	(0.44,0.476]	chr17	639666	34	INTRON	INTRON	KSR1	ENSG00000141068.15	ENST00000644974.2:ENST00000583370.5:ENST00000398988.7:ENST00000268763.10:ENST00000509603.6:ENST00000582311.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	42	2	2.74372	2.8030150000000003	2.86231	0.0153007	0.012214	0.108569	0.0910127
chr19	24094800	24094899	7044485	0	+	0.464646	(0.44,0.476]	chr19	702396	24	INTRON	INTRON	ZNF254	ENSG00000213096.11	ENST00000613065.4:ENST00000611359.3:ENST00000616028.2:ENST00000594886.5:ENST00000339642.10:ENST00000357002.5:ENST00000595187.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	42	2	2.74372	2.8030150000000003	2.86231	0.0153007	0.012214	0.108569	0.0910127
chr3	186970485	186970585	1586576	0	+	0.47	(0.44,0.476]	chr3	164332	62	INTRON	INTRON	ST6GAL1	ENSG00000073849.16	ENST00000676786.1:ENST00000169298.8:ENST00000457772.6:ENST00000455441.5:ENST00000427315.5:ENST00000677292.1:ENST00000458216.5:ENST00000430309.5:ENST00000417392.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	42	2	2.74372	2.8030150000000003	2.86231	0.0153007	0.012214	0.108569	0.0910127
chr3	196501972	196502072	1900005	0	-	0.2	[0,0.28]	chr3	190261	129	INTRON	INTRON	RNF168	ENSG00000163961.4	ENST00000318037.3:ENST00000437070.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	174	2	1.97426	2.802995	3.63173	0.0275926	1.37093e-5	0.123904	0.00276518
chr5	88271560	88271659	2412088	0	+	0.30303	(0.28,0.32]	chr5	232535	22	EXON_LNCRNA	EXON_LNCRNA:INTRON	TMEM161B-DT	ENSG00000247828.9	ENST00000504922.6:ENST00000661377.2:ENST00000658478.1:ENST00000501869.7:ENST00000688087.1:ENST00000654762.1:ENST00000666577.1:ENST00000664347.1:ENST00000658094.1:ENST00000661627.1:ENST00000663476.1:ENST00000669353.1:ENST00000688523.1:ENST00000664546.1:ENST00000688118.1:ENST00000663490.1:ENST00000656903.1:ENST00000689901.1:ENST00000653918.1:ENST00000668471.1:ENST00000659093.1:ENST00000504636.2:ENST00000666808.1:ENST00000671394.1:ENST00000662970.2:ENST00000661351.1:ENST00000688398.1:ENST00000660783.1:ENST00000670030.1:ENST00000664462.1:ENST00000659005.2:ENST00000655966.1:ENST00000670451.1:ENST00000670873.1:ENST00000501715.6:ENST00000657972.2:ENST00000658611.1:ENST00000692797.1:ENST00000504769.5:ENST00000653898.1:ENST00000667139.1:ENST00000684909.1:ENST00000656152.1:ENST00000659215.1:ENST00000669465.1:ENST00000659938.1:ENST00000507736.2:ENST00000667511.1:ENST00000665926.1:ENST00000513694.2:ENST00000693402.1:ENST00000496733.6:ENST00000510087.6:ENST00000506584.5:ENST00000669796.1:ENST00000512724.5:ENST00000668037.1:ENST00000657617.1:ENST00000686930.1:ENST00000667127.1:ENST00000685962.1	lncRNA	lncRNA	lncRNA	lncRNA	5	97	2	2.00031	2.802995	3.60568	0.0110488	0.00127168	0.0928193	0.032635
chrX	16861095	16861192	7769785	0	-	0.556701	(0.515,0.57]	chrX	794098	19	INTRON	INTRON	RBBP7	ENSG00000102054.18	ENST00000380087.7:ENST00000380084.8:ENST00000404022.5:ENST00000416035.1	protein_coding	protein_coding	protein_coding	protein_coding	2	25	2	1.7074	2.80298	3.89856	0.0779432	0.0280943	0.196685	0.137011
chr21	44862130	44862229	7469008	0	-	0.606061	(0.57,1]	chr21	761242	3	INTRON	INTRON	PTTG1IP	ENSG00000183255.12	ENST00000397887.7:ENST00000445724.3:ENST00000330938.8:ENST00000474737.5:ENST00000494690.5:ENST00000480234.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	72	2	2.19706	2.8028500000000003	3.40864	0.00202095	7.37885e-6	0.04086	0.00193149
chr2	171145251	171145351	1263943	0	-	0.52	(0.515,0.57]	chr2	133921	270	INTRON	INTRON	TLK1	ENSG00000198586.14	ENST00000431350.7:ENST00000360843.7:ENST00000359766.7:ENST00000521943.5:ENST00000409443.6:ENST00000413010.5:ENST00000470340.1:ENST00000466220.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	48	2	2.51561	2.802815	3.09002	0.00635044	0.00491099	0.0723103	0.0609494
chr12	116230232	116230332	5425074	0	-	0.49	(0.476,0.515]	chr12	518271	491	INTRON	INTRON	MED13L	ENSG00000123066.9	ENST00000281928.9:ENST00000650226.1:ENST00000548743.2:ENST00000647567.1:ENST00000551197.2	protein_coding	protein_coding	protein_coding	protein_coding	15	243	2	2.60381	2.80274	3.00167	4.55686e-5	3.20024e-5	0.00583644	0.00451714
chr2	131090124	131090224	1229060	0	-	0.46	(0.44,0.476]	chr2	130994	71	INTRON	INTRON	FAM168B	ENSG00000152102.18	ENST00000389915.4:ENST00000409185.5	protein_coding	protein_coding	protein_coding	protein_coding	5	93	2	2.51554	2.80272	3.0899	0.00777207	1.17872e-4	0.0757731	0.00930884
chr18	26069453	26069552	6959515	0	-	0.323232	(0.32,0.35]	chr18	688461	5	INTRON	INTRON	SS18	ENSG00000141380.14	ENST00000415083.7:ENST00000542420.6:ENST00000579640.5:ENST00000269138.9:ENST00000269137.11:ENST00000585121.5:ENST00000539244.6:ENST00000585241.5:ENST00000578954.5:ENST00000579061.5:ENST00000577636.5:ENST00000584083.5:ENST00000578700.5:ENST00000582792.5:ENST00000581021.5:ENST00000577572.5:ENST00000582448.5:ENST00000581570.5:ENST00000577751.5:ENST00000580003.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	90	2	2.32678	2.8026799999999996	3.27858	0.00368368	0.00272092	0.0535094	0.0481508
chr3	154307580	154307678	1843365	0	-	0.336735	(0.32,0.35]	chr3	185450	9	INTRON	INTRON	DHX36	ENSG00000174953.14	ENST00000496811.6:ENST00000308361.10:ENST00000329463.9:ENST00000481941.5	protein_coding	protein_coding	protein_coding	protein_coding	5	90	2	2.32678	2.8026799999999996	3.27858	0.00368368	0.00272092	0.0535094	0.0481508
chr9	72363883	72363976	4266271	0	-	0.44086	(0.44,0.476]	chr9	392645	4	EXON_LNCRNA	EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ZFAND5	ENSG00000107372.13	ENST00000376962.10:ENST00000237937.7:ENST00000376960.8:ENST00000488164.5:ENST00000343431.6:ENST00000376956.3:ENST00000487330.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	124	2	2.31264	2.802595	3.29255	0.00316873	3.52404e-5	0.0503085	0.00474635
chr19	28534999	28535099	7166445	0	-	0.42	(0.408,0.44]	chr19	724191	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ENSG00000283403:ENSG00000267243	ENSG00000283403.1:ENSG00000267243.6	ENST00000592347.5:ENST00000593065.5	lncRNA	lncRNA	lncRNA	lncRNA	5	77	2	2.00961	2.8025849999999997	3.59556	0.00931007	8.33275e-4	0.0855292	0.0266389
chr2	197420100	197420192	1306872	0	-	0.315217	(0.28,0.32]	chr2	136731	6	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SF3B1	ENSG00000115524.17	ENST00000652026.1:ENST00000652738.1:ENST00000335508.11:ENST00000470268.2:ENST00000409915.8:ENST00000414963.2:ENST00000487698.5:ENST00000414174.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	196	2	2.19679	2.802575	3.40836	8.19965e-4	3.04565e-4	0.0261667	0.0161236
chr12	53452816	53452909	5142890	0	+	0.483871	(0.476,0.515]	chr12	485374	1	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	PCBP2	ENSG00000197111.16	ENST00000546463.6:ENST00000437231.5:ENST00000447282.5:ENST00000359282.9:ENST00000549863.5:ENST00000359462.9:ENST00000550520.6:ENST00000552296.6:ENST00000550192.5:ENST00000551104.5	protein_coding	protein_coding	protein_coding	protein_coding	25	424	2	2.52536	2.80235	3.07934	2.1061e-5	1.98818e-6	0.00355038	9.67264e-4
chr10	28604202	28604302	4414523	0	+	0.36	(0.35,0.378]	chr10	407171	78	INTRON	INTRON	WAC	ENSG00000095787.24	ENST00000680735.1:ENST00000375664.8:ENST00000428935.6:ENST00000628285.3:ENST00000681112.1:ENST00000679570.1:ENST00000375646.5:ENST00000354911.9:ENST00000347934.8:ENST00000420266.6:ENST00000679398.1:ENST00000424454.5:ENST00000442148.6:ENST00000414108.6:ENST00000679428.1:ENST00000439676.5:ENST00000345541.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	74	2	2.56634	2.80224	3.03814	0.00767003	0.00190773	0.075364	0.0403772
chr14	37140982	37141082	5877697	0	-	0.49	(0.476,0.515]	chr14	558013	2656	INTRON	INTRON	SLC25A21	ENSG00000183032.12	ENST00000331299.6:ENST00000555449.5:ENST00000557611.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	116	2	2.33443	2.8022349999999996	3.27004	0.00160781	2.20887e-4	0.0365246	0.0130309
chr7	119863925	119864025	3629980	0	-	0.4	(0.378,0.408]	chr7	337335	627	INTRON	INTRON	LINC02476	ENSG00000225546.6	ENST00000660268.1:ENST00000431071.5:ENST00000426413.2	lncRNA	lncRNA	lncRNA	lncRNA	3	58	2	2.41037	2.802025	3.19368	0.0100185	0.00426861	0.0880217	0.0573912
chr15	51922214	51922313	6028082	0	+	0.383838	(0.378,0.408]	chr15	574359	2	INTRON	INTRON	TMOD3	ENSG00000138594.14	ENST00000560549.5:ENST00000561438.5:ENST00000558714.5:ENST00000559202.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	2	45	2	2.54849	2.801755	3.05502	0.0273196	0.00689519	0.136494	0.0717484
chr3	172168655	172168755	1560841	0	+	0.33	(0.32,0.35]	chr3	161551	197	INTRON	INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000421757.5:ENST00000469491.5:ENST00000336824.8:ENST00000423424.5:ENST00000416957.5:ENST00000478016.1:ENST00000443501.1:ENST00000476794.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	122	2	2.79085	2.801735	2.81262	0.00311322	2.78537e-4	0.0498063	0.0148769
chr1	226186089	226186189	647052	0	-	0.52	(0.515,0.57]	chr1	76668	3	SS5_PROX	SS5_PROX:INTRON	ACBD3	ENSG00000182827.9	ENST00000366812.6	protein_coding	protein_coding	protein_coding	protein_coding	3	48	2	2.57298	2.801675	3.03037	0.00608732	0.00506495	0.0676501	0.0646039
chr16	69589231	69589331	6380242	0	+	0.54	(0.515,0.57]	chr16	613167	203	INTRON	INTRON	NFAT5	ENSG00000102908.22	ENST00000426654.6:ENST00000349945.7:ENST00000354436.6:ENST00000627621.3:ENST00000650987.1:ENST00000567990.5:ENST00000567239.5:ENST00000393742.7:ENST00000565301.2:ENST00000566899.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	48	2	2.57298	2.801675	3.03037	0.00608732	0.00506495	0.0676501	0.0646039
chr3	152312936	152313036	1535428	0	+	0.31	(0.28,0.32]	chr3	159996	106	INTRON	INTRON	MBNL1	ENSG00000152601.18	ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000495875.6:ENST00000324210.10:ENST00000493459.5:ENST00000459747.1:ENST00000460591.5:ENST00000545754.5:ENST00000357472.7:ENST00000324196.9:ENST00000498502.5:ENST00000463374.5:ENST00000485910.5:ENST00000465907.6:ENST00000492948.5:ENST00000485509.5:ENST00000464596.5	protein_coding	protein_coding	protein_coding	protein_coding	7	158	2	2.78411	2.801635	2.81916	0.00117007	3.40018e-4	0.0312141	0.0164308
chr16	327068	327168	6426600	0	-	0.57	(0.515,0.57]	chr16	617500	120	INTRON	INTRON	AXIN1	ENSG00000103126.15	ENST00000262320.8:ENST00000461023.5:ENST00000354866.7:ENST00000481769.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	48	2	2.45585	2.8015749999999997	3.1473	0.00797827	0.00397184	0.0798772	0.0549214
chr1	29042473	29042572	60248	0	+	0.484848	(0.476,0.515]	chr1	7705	11	INTRON	INTRON	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000647918.1:ENST00000646800.1:ENST00000644342.1:ENST00000646189.1:ENST00000482464.6:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000646260.1:ENST00000373798.5:ENST00000644600.1:ENST00000649674.1:ENST00000643173.1:ENST00000343067.9:ENST00000644780.1:ENST00000650265.1:ENST00000648181.1:ENST00000643604.1:ENST00000648891.1:ENST00000373797.2:ENST00000349460.9:ENST00000645184.1:ENST00000645111.1:ENST00000643302.1:ENST00000645999.1:ENST00000642643.1:ENST00000636666.1:ENST00000644848.1:ENST00000644470.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	67	2	2.45107	2.801545	3.15202	0.00455841	0.00301722	0.0595107	0.0507519
chr4	70969230	70969330	1971177	0	+	0.51	(0.476,0.515]	chr4	197590	98	INTRON	INTRON	MOB1B	ENSG00000173542.9	ENST00000502869.5:ENST00000509041.5:ENST00000309395.7:ENST00000396051.2:ENST00000511449.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	78	2	2.21677	2.801515	3.38626	0.0207026	1.1754e-4	0.110999	0.00930356
chr7	76551019	76551119	3340377	0	+	0.44	(0.408,0.44]	chr7	311165	2	SS3_PROX	SS3_PROX:INTRON	ENSG00000205485	ENSG00000205485.13	ENST00000418663.5:ENST00000450661.1:ENST00000423084.1:ENST00000429707.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	18	309	2	2.64487	2.8015	2.95813	6.92052e-5	3.58872e-6	0.00739963	0.00123456
chr7	156889769	156889869	3687984	0	-	0.48	(0.476,0.515]	chr7	342096	525	INTRON	INTRON	LMBR1	ENSG00000105983.23	ENST00000353442.10:ENST00000415428.5:ENST00000454132.5:ENST00000434503.5:ENST00000430278.5:ENST00000434278.5:ENST00000444719.5:ENST00000461469.5:ENST00000414218.1:ENST00000434453.1:ENST00000498034.5:ENST00000433968.5:ENST00000485985.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	91	2	2.67242	2.80144	2.93046	0.00136918	0.00118985	0.0336718	0.031662
chr19	28520716	28520816	7166302	0	-	0.53	(0.515,0.57]	chr19	724189	525	INTRON	INTRON	ENSG00000283403:ENSG00000267243	ENSG00000283403.1:ENSG00000267243.6	ENST00000592347.5:ENST00000593065.5	lncRNA	lncRNA	lncRNA	lncRNA	8	117	2	2.50471	2.8013950000000003	3.09808	4.33065e-4	1.21563e-4	0.0186938	0.00992813
chr1	120172031	120172130	533791	0	-	0.464646	(0.44,0.476]	chr1	62786	27	INTRON	INTRON	SEC22B	ENSG00000265808.4	ENST00000578049.4	protein_coding	protein_coding	protein_coding	protein_coding	3	56	2	2.19078	2.80127	3.41176	0.0226089	0.00130987	0.117489	0.0333932
chr22	30969818	30969916	7501257	0	+	0.704082	(0.57,1]	chr22	765293	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	TUG1	ENSG00000253352.10	ENST00000646021.1:ENST00000646496.1:ENST00000644773.2:ENST00000569384.2:ENST00000643920.1:ENST00000602971.2:ENST00000519077.4:ENST00000643280.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	89	2	2.06124	2.80127	3.5413	0.00109835	2.62787e-6	0.0304585	0.0010365
chr7	139362017	139362117	3437609	0	+	0.26	[0,0.28]	chr7	320318	13	INTRON	INTRON	LUC7L2:FMC1-LUC7L2	ENSG00000146963.18:ENSG00000269955.2	ENST00000541170.7:ENST00000541515.3:ENST00000608368.5:ENST00000619796.4:ENST00000354926.9:ENST00000435096.1:ENST00000456182.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	233	2	2.68476	2.801215	2.91767	5.06801e-4	3.90397e-4	0.020816	0.0177821
chr1	93873369	93873455	512384	0	-	0.348837	(0.32,0.35]	chr1	60187	1	SS3_PROX	SS3_PROX:INTRON	DNTTIP2	ENSG00000067334.14	ENST00000436063.7:ENST00000359208.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	50	2	2.56618	2.801075	3.03597	0.0274185	0.00832487	0.136498	0.0774402
chr18	3605766	3605861	6867419	0	+	0.4	(0.378,0.408]	chr18	680389	12	INTRON	INTRON	DLGAP1-AS2	ENSG00000262001.2	ENST00000572856.1:ENST00000692104.1:ENST00000687483.1:ENST00000693339.1:ENST00000689896.1:ENST00000691824.1	lncRNA	lncRNA	lncRNA	lncRNA	6	97	2	2.5964	2.80104	3.00568	0.00811866	3.17768e-4	0.0766625	0.0159645
chr18	785703	785803	6940439	0	-	0.44	(0.408,0.44]	chr18	686519	102	INTRON	INTRON	YES1	ENSG00000176105.14	ENST00000584307.5:ENST00000314574.5:ENST00000577611.1:ENST00000581960.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	14	205	2	1.82727	2.801	3.77473	0.00259418	3.6094e-6	0.0470631	0.0013551
chr5	54052892	54052992	2618334	0	-	0.46	(0.44,0.476]	chr5	248837	47	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	14	176	2	1.56019	2.8009199999999996	4.04165	0.0102901	1.9562e-6	0.0850389	8.48598e-4
chr11	47483253	47483352	4949685	0	-	0.353535	(0.35,0.378]	chr11	464175	4	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CELF1	ENSG00000149187.19	ENST00000310513.10:ENST00000687097.1:ENST00000395290.6:ENST00000358597.7:ENST00000395292.6:ENST00000361904.7:ENST00000531165.5:ENST00000532048.5:ENST00000422993.2:ENST00000532146.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	61	2	2.19034	2.800865	3.41139	0.023941	0.00143263	0.119443	0.0347139
chr11	58596658	58596757	4793919	0	+	0.373737	(0.35,0.378]	chr11	443838	114	INTRON	INTRON	ZFP91	ENSG00000186660.15	ENST00000316059.7	protein_coding	protein_coding	protein_coding	protein_coding	3	61	2	2.19034	2.800865	3.41139	0.023941	0.00143263	0.119443	0.0347139
chr11	3760055	3760140	4894788	0	-	0.352941	(0.35,0.378]	chr11	458877	3	SS5_PROX	SS5_PROX:INTRON	NUP98	ENSG00000110713.17	ENST00000359171.8:ENST00000324932.12:ENST00000650171.1:ENST00000355260.7:ENST00000397004.8:ENST00000397007.8:ENST00000527104.5:ENST00000529379.1:ENST00000397013.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	118	2	2.59391	2.8008550000000003	3.0078	0.00229337	2.11734e-4	0.0428247	0.0127388
chr3	47161928	47162027	1681584	0	-	0.242424	[0,0.28]	chr3	171624	349	INTRON	INTRON	SETD2	ENSG00000181555.22	ENST00000691544.1:ENST00000638947.2:ENST00000409792.4:ENST00000412450.1	protein_coding	protein_coding	protein_coding	protein_coding	3	80	2	2.6632	2.8008499999999996	2.9385	0.0142776	0.00515076	0.0963703	0.0650394
chr5	10397192	10397292	2318093	0	+	0.27	[0,0.28]	chr5	224664	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	MARCHF6	ENSG00000145495.16	ENST00000274140.10:ENST00000449913.6:ENST00000511802.5:ENST00000503788.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	80	2	2.6632	2.8008499999999996	2.9385	0.0142776	0.00515076	0.0963703	0.0650394
chr1	148901155	148901255	214761	0	+	0.43	(0.408,0.44]	chr1	23778	109	INTRON	INTRON	PDE4DIP	ENSG00000178104.20	ENST00000695768.1:ENST00000695767.1:ENST00000695766.1:ENST00000530472.5:ENST00000695794.1:ENST00000524974.5:ENST00000620605.4:ENST00000585156.5:ENST00000695769.1:ENST00000618462.4:ENST00000695795.1:ENST00000617031.4:ENST00000617527.4:ENST00000533259.1:ENST00000619981.4:ENST00000617454.4:ENST00000613995.4:ENST00000621371.4:ENST00000534536.5:ENST00000528129.5:ENST00000369356.8:ENST00000533845.1:ENST00000526445.1:ENST00000369354.7:ENST00000369347.8:ENST00000369349.7:ENST00000369351.7:ENST00000612094.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	42	2	2.78122	2.80082	2.82042	0.015812	0.0120121	0.101453	0.0962115
chr12	91625515	91625615	5385472	0	-	0.44	(0.408,0.44]	chr12	513485	1183	INTRON	INTRON	ENSG00000289605	ENSG00000289605.1	ENST00000685093.1	lncRNA	lncRNA	lncRNA	lncRNA	2	42	2	2.78122	2.80082	2.82042	0.015812	0.0120121	0.101453	0.0962115
chr5	133975184	133975277	2725759	0	-	0.430108	(0.408,0.44]	chr5	256430	10	INTRON	INTRON	VDAC1	ENSG00000213585.11	ENST00000265333.8:ENST00000395044.7:ENST00000395047.6:ENST00000492324.1:ENST00000489906.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	42	2	2.78122	2.80082	2.82042	0.015812	0.0120121	0.101453	0.0962115
chr6	5145560	5145660	3048924	0	-	0.42	(0.408,0.44]	chr6	283826	9	INTRON	INTRON	LYRM4	ENSG00000214113.11	ENST00000330636.9:ENST00000468929.5:ENST00000464010.5:ENST00000463032.5:ENST00000480566.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	42	2	2.78122	2.80082	2.82042	0.015812	0.0120121	0.101453	0.0962115
chr6	38788133	38788230	2861142	0	+	0.42268	(0.408,0.44]	chr6	270387	8	INTRON	INTRON	DNAH8	ENSG00000124721.18	ENST00000327475.11:ENST00000449981.6:ENST00000359357.7	protein_coding	protein_coding	protein_coding	protein_coding	2	42	2	2.78122	2.80082	2.82042	0.015812	0.0120121	0.101453	0.0962115
chr6	83192278	83192369	3145879	0	-	0.43956	(0.408,0.44]	chr6	293332	6	INTRON	INTRON	PGM3	ENSG00000013375.16	ENST00000513973.6:ENST00000512866.5:ENST00000650640.1:ENST00000616566.5:ENST00000283977.9:ENST00000651425.1:ENST00000650642.1:ENST00000506587.5:ENST00000509219.2:ENST00000652468.1:ENST00000510258.1:ENST00000505470.5:ENST00000507554.1:ENST00000508748.5:ENST00000503094.1:ENST00000515333.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	42	2	2.78122	2.80082	2.82042	0.015812	0.0120121	0.101453	0.0962115
chr1	35176818	35176896	420425	0	-	0.448718	(0.44,0.476]	chr1	50637	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SFPQ	ENSG00000116560.12	ENST00000470472.5:ENST00000460428.5:ENST00000468598.5:ENST00000471991.5:ENST00000485365.1:ENST00000490668.5:ENST00000466213.5:ENST00000466745.5	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	6	108	2	2.53607	2.8007999999999997	3.06553	0.00255314	1.35514e-4	0.0449364	0.0100405
chrX	44959083	44959183	7649461	0	+	0.41	(0.408,0.44]	chrX	782726	847	INTRON	INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000675440.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000621147.5:ENST00000475233.1:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	44	2	2.18807	2.80065	3.41323	0.0708044	0.00129989	0.184528	0.0333764
chr5	154869078	154869176	2527784	0	+	0.428571	(0.408,0.44]	chr5	241753	9	INTRON	INTRON	CNOT8	ENSG00000155508.14	ENST00000523698.5:ENST00000517876.5:ENST00000520472.5:ENST00000519211.5:ENST00000522458.5:ENST00000403027.6:ENST00000521450.5:ENST00000519903.5:ENST00000517568.5:ENST00000524105.5:ENST00000285896.11:ENST00000521583.5:ENST00000520671.5:ENST00000519404.5:ENST00000521729.5:ENST00000518775.5:ENST00000522644.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	56	2	2.64829	2.800625	2.95296	0.00929354	0.00400062	0.0817766	0.057767
chr1	155853075	155853175	564409	0	-	0.43	(0.408,0.44]	chr1	67385	4	SS5_PROX	SS5_PROX:INTRON	GON4L	ENSG00000116580.20	ENST00000368331.6:ENST00000615926.4:ENST00000437809.5:ENST00000271883.9:ENST00000361040.9:ENST00000622608.2:ENST00000471341.5:ENST00000468867.1:ENST00000488251.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	56	2	2.44674	2.80044	3.15414	0.00868283	0.00469847	0.0842798	0.0600108
chr7	119891603	119891703	3630257	0	-	0.22	[0,0.28]	chr7	337335	904	INTRON	INTRON	LINC02476	ENSG00000225546.6	ENST00000660268.1:ENST00000431071.5:ENST00000426413.2	lncRNA	lncRNA	lncRNA	lncRNA	3	81	2	2.02265	2.80037	3.57809	0.0449017	0.00109779	0.149888	0.0303708
chr11	61403622	61403721	4956779	0	-	0.414141	(0.408,0.44]	chr11	465837	11	UTR3	UTR3:EXON_MRNA	CPSF7	ENSG00000149532.16	ENST00000340437.8:ENST00000394888.8:ENST00000439958.8	protein_coding	protein_coding	protein_coding	protein_coding	7	124	2	2.75945	2.800275	2.8411	6.58235e-4	2.60318e-4	0.0234118	0.014326
chr3	196074841	196074933	1897483	0	-	0.478261	(0.476,0.515]	chr3	189978	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TFRC	ENSG00000072274.13	ENST00000420415.5:ENST00000360110.9:ENST00000392396.7:ENST00000421258.1:ENST00000464011.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	51	807	2	2.64254	2.8002399999999996	2.95794	1.45975e-6	1.21766e-6	7.9294e-4	6.42263e-4
chr11	61304831	61304929	4956194	0	-	0.459184	(0.44,0.476]	chr11	465677	4	INTRON	INTRON	DDB1	ENSG00000167986.15	ENST00000301764.12:ENST00000680367.1:ENST00000681803.1:ENST00000680717.1:ENST00000679712.1:ENST00000680357.1:ENST00000680075.1:ENST00000679588.1:ENST00000680602.1:ENST00000680881.1:ENST00000681188.1:ENST00000535283.6:ENST00000680452.1:ENST00000681935.1:ENST00000680250.1:ENST00000680959.1:ENST00000540166.5:ENST00000679855.1:ENST00000539332.2:ENST00000681368.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	69	2	1.66462	2.800235	3.93585	0.0520247	1.04728e-4	0.159508	0.00863456
chr18	2726051	2726151	6865594	0	+	0.22	[0,0.28]	chr18	680057	2	SS3_PROX	SS3_PROX:INTRON	SMCHD1	ENSG00000101596.17	ENST00000320876.11:ENST00000688342.1:ENST00000693213.1:ENST00000577880.5:ENST00000584897.5:ENST00000583441.2:ENST00000690757.1:ENST00000581383.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	59	2	2.64309	2.8001899999999997	2.95729	0.0308646	0.0101824	0.13151	0.089002
chr6	147709063	147709163	2991087	0	+	0.25	[0,0.28]	chr6	280167	162	INTRON	INTRON	ENSG00000227681	ENSG00000227681.5	ENST00000427015.1:ENST00000432506.5:ENST00000442094.5:ENST00000434985.1	lncRNA	lncRNA	lncRNA	lncRNA	2	59	2	2.64309	2.8001899999999997	2.95729	0.0308646	0.0101824	0.13151	0.089002
chr1	234604465	234604564	661439	0	-	0.313131	(0.28,0.32]	chr1	78268	3	UTR3	UTR3:EXON_MRNA	IRF2BP2	ENSG00000168264.11	ENST00000366609.4:ENST00000366610.7	protein_coding	protein_coding	protein_coding	protein_coding	2	52	2	2.62686	2.800095	2.97333	0.0289217	0.00857834	0.1274	0.083729
chr11	31472637	31472735	4938867	0	-	0.285714	(0.28,0.32]	chr11	462585	25	INTRON	INTRON	IMMP1L	ENSG00000148950.11	ENST00000532287.6:ENST00000534812.5:ENST00000526776.5:ENST00000278200.5:ENST00000648582.1:ENST00000533642.1:ENST00000527184.5:ENST00000528161.5:ENST00000532624.5:ENST00000529749.5:ENST00000530023.5:ENST00000531693.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	52	2	2.62686	2.800095	2.97333	0.0289217	0.00857834	0.1274	0.083729
chr3	142162422	142162522	1835502	0	-	0.3	(0.28,0.32]	chr3	184380	50	UTR3	UTR3:EXON_MRNA	GK5	ENSG00000175066.16	ENST00000392993.7	protein_coding	protein_coding	protein_coding	protein_coding	2	52	2	2.62686	2.800095	2.97333	0.0289217	0.00857834	0.1274	0.083729
chr1	225785463	225785563	327319	0	+	0.57	(0.515,0.57]	chr1	37657	17	INTRON	INTRON	SRP9	ENSG00000143742.14	ENST00000626563.2:ENST00000619790.4:ENST00000304786.12:ENST00000650651.1:ENST00000366839.8:ENST00000651465.1:ENST00000651761.1:ENST00000651653.1:ENST00000366838.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	58	2	2.01978	2.800065	3.58035	0.0165522	5.21239e-4	0.102621	0.0204523
chr5	90691341	90691441	2421755	0	+	0.33	(0.32,0.35]	chr5	232945	3	SS5_PROX	SS5_PROX:INTRON	ADGRV1	ENSG00000164199.18	ENST00000405460.9:ENST00000640403.1:ENST00000639473.1:ENST00000639431.1:ENST00000640779.1:ENST00000640012.1:ENST00000640374.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	147	2	1.77091	2.80001	3.82911	0.0146308	1.20951e-5	0.0982604	0.00258123
chr2	10364378	10364478	692246	0	+	0.66	(0.57,1]	chr2	81139	96	INTRON	INTRON	HPCAL1	ENSG00000115756.13	ENST00000423674.5:ENST00000307845.8:ENST00000381765.7:ENST00000419810.6:ENST00000622018.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	38	2	1.79063	2.79993	3.80923	0.0356001	1.11529e-4	0.15159	0.00945289
chr20	47312789	47312888	7349071	0	-	0.525253	(0.515,0.57]	chr20	749342	22	INTRON	INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000468376.2:ENST00000435836.5:ENST00000446894.5:ENST00000441977.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	106	2	2.54852	2.7999099999999997	3.0513	7.08868e-4	1.58148e-4	0.0242289	0.0114628
chr8	90367866	90367966	3793774	0	+	0.43	(0.408,0.44]	chr8	351792	158	INTRON	INTRON	LINC00534	ENSG00000253394.7	ENST00000662145.1:ENST00000655523.1:ENST00000517400.6:ENST00000658299.1:ENST00000663329.1:ENST00000658342.1:ENST00000523283.6:ENST00000655219.1:ENST00000662692.1:ENST00000667296.1:ENST00000667565.1:ENST00000523406.2:ENST00000659030.1:ENST00000653734.1:ENST00000654785.1:ENST00000524361.5:ENST00000668745.1:ENST00000661519.1:ENST00000671657.1:ENST00000655123.1:ENST00000663098.1:ENST00000670903.1:ENST00000654946.1	lncRNA	lncRNA	lncRNA	lncRNA	5	77	2	2.22819	2.799905	3.37162	0.00373083	0.00208674	0.0561984	0.0411801
chr4	55408123	55408222	1960712	0	+	0.353535	(0.35,0.378]	chr4	196553	44	INTRON	INTRON	TMEM165	ENSG00000134851.13	ENST00000381334.10:ENST00000506198.5:ENST00000508404.5:ENST00000511710.1:ENST00000502797.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	13	148	2	1.783	2.799865	3.81673	0.00305308	3.76372e-4	0.0509893	0.0179911
chr8	31144414	31144511	3729068	0	+	0.536082	(0.515,0.57]	chr8	346676	4	INTRON	INTRON	WRN	ENSG00000165392.11	ENST00000650667.1:ENST00000298139.7:ENST00000521620.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	36	2	2.68833	2.799865	2.9114	0.0184931	0.00826019	0.108861	0.0813266
chr3	128065656	128065756	1496665	0	+	0.29	(0.28,0.32]	chr3	156282	4	SS5_PROX	SS5_PROX:INTRON	SEC61A1	ENSG00000058262.10	ENST00000464451.5:ENST00000243253.8:ENST00000424880.2:ENST00000483956.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	71	2	2.05458	2.79986	3.54514	0.0381508	0.00100603	0.141764	0.0292285
chr16	24756651	24756750	6329484	0	+	0.484848	(0.476,0.515]	chr16	605939	55	INTRON	INTRON	TNRC6A	ENSG00000090905.19	ENST00000395799.8:ENST00000315183.11:ENST00000562829.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	86	2	1.81741	2.799765	3.78212	0.0141271	2.36145e-4	0.0959618	0.0136195
chr6	89708295	89708395	3160861	0	-	0.36	(0.35,0.378]	chr6	294617	4	SS5_PROX	SS5_PROX:INTRON	MDN1	ENSG00000112159.12	ENST00000369393.8:ENST00000629399.2	protein_coding	protein_coding	protein_coding	protein_coding	4	77	2	2.38273	2.79975	3.21677	0.00534773	0.00313804	0.0642565	0.0514466
chr11	105515915	105516002	5030382	0	-	0.54023	(0.515,0.57]	chr11	474026	6	UTR5	UTR5:EXON_MRNA:INTRON	CARD18	ENSG00000255501.3	ENST00000649856.1:ENST00000528811.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	77	2	2.53705	2.7997199999999998	3.06239	0.00186194	6.62949e-4	0.039946	0.0234815
chr18	811713	811813	6940701	0	-	0.65	(0.57,1]	chr18	686528	2	SS5_PROX	SS5_PROX:INTRON	YES1	ENSG00000176105.14	ENST00000584307.5:ENST00000314574.5:ENST00000577611.1:ENST00000581960.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	60	2	2.24207	2.799715	3.35736	0.00159402	8.14057e-5	0.0364566	0.00755207
chr20	5108365	5108462	7311473	0	-	0.412371	(0.408,0.44]	chr20	744444	17	INTRON	INTRON	TMEM230	ENSG00000089063.15	ENST00000615008.4:ENST00000612323.4:ENST00000202834.11:ENST00000379283.6:ENST00000379279.6:ENST00000379299.6:ENST00000379286.6:ENST00000492419.1:ENST00000379277.6:ENST00000342308.10:ENST00000379276.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	73	2	2.51198	2.79968	3.08738	0.00478231	0.00288187	0.0636201	0.0475859
chr15	85093868	85093967	6090062	0	+	0.525253	(0.515,0.57]	chr15	579554	23	INTRON	INTRON	PDE8A	ENSG00000073417.15	ENST00000310298.8:ENST00000557957.5:ENST00000394553.6:ENST00000339708.9:ENST00000478717.5:ENST00000485596.5:ENST00000559742.5:ENST00000559086.5:ENST00000560789.5:ENST00000557819.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	15	207	2	2.34952	2.7995799999999997	3.24964	1.25482e-4	5.58397e-6	0.00957656	0.00176693
chr19	19389926	19390026	7035187	0	+	0.49	(0.476,0.515]	chr19	701429	34	INTRON	INTRON	GATAD2A	ENSG00000167491.18	ENST00000494516.6:ENST00000360315.7:ENST00000609040.5:ENST00000417582.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	75	2	2.72507	2.7995650000000003	2.87406	0.0029369	0.00188729	0.0496505	0.0391691
chr22	16634149	16634249	7473688	0	+	0.4	(0.378,0.408]	chr22	762000	109	INTRON	INTRON	TPTEP1	ENSG00000100181.22	ENST00000558085.6:ENST00000400593.6:ENST00000426585.5:ENST00000383140.7	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	4	78	2	2.47752	2.79951	3.1215	0.0092831	4.84777e-4	0.0817766	0.0199443
chr19	52894320	52894420	7208852	0	-	0.41	(0.408,0.44]	chr19	731692	1	SS3_PROX	SS3_PROX:SS5_PROX:INTRON	ZNF320	ENSG00000182986.15	ENST00000673631.1:ENST00000594408.3:ENST00000600930.1:ENST00000682928.1:ENST00000595635.5:ENST00000593618.5:ENST00000594741.5:ENST00000597111.5:ENST00000601334.5:ENST00000597856.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	44	2	2.49258	2.799495	3.10641	0.0314608	0.00555646	0.144381	0.0648867
chr20	50912772	50912871	7355691	0	-	0.313131	(0.28,0.32]	chr20	750099	31	INTRON	INTRON	ADNP	ENSG00000101126.18	ENST00000621696.5:ENST00000673732.1:ENST00000396029.8:ENST00000644386.1:ENST00000396032.8:ENST00000645081.1:ENST00000642364.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	70	2	2.51426	2.79944	3.08462	0.0078976	0.00781326	0.0788246	0.076155
chr1	109216639	109216738	179619	0	+	0.484848	(0.476,0.515]	chr1	19612	16	INTRON	INTRON	SARS1	ENSG00000031698.13	ENST00000234677.7:ENST00000477544.5:ENST00000369923.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	227	2	2.23459	2.799435	3.36428	0.00114776	9.6097e-7	0.0308671	5.54959e-4
chr9	132625463	132625563	4367825	0	-	0.35	(0.32,0.35]	chr9	401604	4	SS5_PROX	SS5_PROX:INTRON	DDX31	ENSG00000125485.18	ENST00000372159.8	protein_coding	protein_coding	protein_coding	protein_coding	3	68	2	2.63115	2.799305	2.96746	0.00815799	0.00608073	0.0810802	0.0676501
chr19	17339699	17339799	7030043	0	+	0.44	(0.408,0.44]	chr19	700027	1	SS5_PROX	SS5_PROX:INTRON	GTPBP3	ENSG00000130299.17	ENST00000361619.9:ENST00000598038.5:ENST00000324894.13:ENST00000600625.5:ENST00000358792.11:ENST00000598493.5:ENST00000594018.5:ENST00000602056.1:ENST00000596125.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	109	2	2.77154	2.799255	2.82697	9.14134e-4	4.95662e-4	0.0278396	0.0201536
chr18	185697	185796	6855101	0	+	0.494949	(0.476,0.515]	chr18	679521	50	INTRON	INTRON	USP14	ENSG00000101557.15	ENST00000582707.5:ENST00000400266.7:ENST00000261601.8:ENST00000578942.5:ENST00000383589.6:ENST00000583119.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	125	2	2.10459	2.7992	3.49381	0.00302726	6.39656e-5	0.0493883	0.00661396
chr6	147287895	147287995	2989549	0	+	0.4	(0.378,0.408]	chr6	280037	93	INTRON	INTRON	STXBP5	ENSG00000164506.15	ENST00000321680.11:ENST00000367481.7:ENST00000546097.5:ENST00000367480.7	protein_coding	protein_coding	protein_coding	protein_coding	8	148	2	2.78965	2.79915	2.80865	3.37643e-4	2.29046e-4	0.0170719	0.0133403
chr1	32146413	32146513	63838	0	+	0.32	(0.28,0.32]	chr1	8075	30	INTRON	INTRON	KPNA6	ENSG00000025800.14	ENST00000373625.8:ENST00000471599.5:ENST00000469790.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	52	2	2.57195	2.799135	3.02632	0.0331711	0.0071944	0.133994	0.0756118
chr5	145818635	145818716	2746474	0	-	0.308642	(0.28,0.32]	chr5	258701	2	INTRON	INTRON	PRELID2	ENSG00000186314.12	ENST00000683046.1:ENST00000334744.8:ENST00000394450.6:ENST00000505416.5:ENST00000511435.1	protein_coding	protein_coding	protein_coding	protein_coding	2	52	2	2.57195	2.799135	3.02632	0.0331711	0.0071944	0.133994	0.0756118
chr7	16642631	16642730	3494998	0	-	0.292929	(0.28,0.32]	chr7	326342	58	INTRON	INTRON	ANKMY2	ENSG00000106524.9	ENST00000306999.7:ENST00000447802.3:ENST00000628652.1:ENST00000453623.5:ENST00000421746.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	52	2	2.57195	2.799135	3.02632	0.0331711	0.0071944	0.133994	0.0756118
chr7	34968737	34968834	3517027	0	-	0.309278	(0.28,0.32]	chr7	328021	14	INTRON	INTRON	DPY19L1	ENSG00000173852.16	ENST00000690503.1:ENST00000685246.1:ENST00000690666.1:ENST00000612226.2:ENST00000310974.8:ENST00000638088.2:ENST00000446375.1:ENST00000462134.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	52	2	2.57195	2.799135	3.02632	0.0331711	0.0071944	0.133994	0.0756118
chr13	46036486	46036586	5586042	0	-	0.36	(0.35,0.378]	chr13	533848	156	INTRON	INTRON	ZC3H13	ENSG00000123200.17	ENST00000242848.8:ENST00000679008.1:ENST00000282007.7	protein_coding	protein_coding	protein_coding	protein_coding	3	61	2	2.34278	2.7991349999999997	3.25549	0.0129593	0.00363602	0.0991015	0.0535085
chr11	71898177	71898277	4975698	0	-	0.37	(0.35,0.378]	chr11	469936	132	INTRON	INTRON	XNDC1N	ENSG00000254469.10	ENST00000679695.1:ENST00000532852.5:ENST00000679412.2:ENST00000528511.6	protein_coding	protein_coding	protein_coding	protein_coding	4	75	2	2.23309	2.7991149999999996	3.36514	0.00930277	0.00173699	0.0817766	0.03851
chr10	101814300	101814398	4680936	0	-	0.397959	(0.378,0.408]	chr10	432022	3	INTRON	INTRON	OGA	ENSG00000198408.14	ENST00000439817.5:ENST00000361464.8:ENST00000357797.9:ENST00000370094.7:ENST00000429860.1	protein_coding	protein_coding	protein_coding	protein_coding	19	251	2	1.92915	2.7991099999999998	3.66907	7.67023e-4	8.15397e-6	0.0254532	0.00216686
chr1	244675105	244675205	347931	0	+	0.31	(0.28,0.32]	chr1	40357	187	INTRON	INTRON	DESI2	ENSG00000121644.19	ENST00000263831.11:ENST00000302550.16:ENST00000418162.1	protein_coding	protein_coding	protein_coding	protein_coding	2	52	2	2.67975	2.799035	2.91832	0.0252505	0.0102484	0.12011	0.089002
chr5	139304945	139305045	2499493	0	+	0.3	(0.28,0.32]	chr5	238913	51	INTRON	INTRON	MATR3	ENSG00000280987.4:ENSG00000015479.20	ENST00000509990.5:ENST00000506147.5:ENST00000512107.5:ENST00000361059.7:ENST00000394800.6:ENST00000502929.5:ENST00000504203.5:ENST00000514694.5:ENST00000509644.5:ENST00000505016.2:ENST00000502394.1:ENST00000512876.5:ENST00000513678.5:ENST00000513121.1:ENST00000504045.5:ENST00000504311.5:ENST00000502499.5:ENST00000510056.5:ENST00000511249.5:ENST00000394805.8:ENST00000507860.1:ENST00000509918.5:ENST00000503811.5:ENST00000511978.5:ENST00000618441.5:ENST00000508689.1:ENST00000514528.5:ENST00000504643.5:ENST00000514488.1:ENST00000503340.1:ENST00000504023.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	52	2	2.67975	2.799035	2.91832	0.0252505	0.0102484	0.12011	0.089002
chr10	69192863	69192963	4445200	0	+	0.45	(0.44,0.476]	chr10	410109	12	EXON_MRNA	EXON_MRNA:INTRON	SUPV3L1	ENSG00000156502.14	ENST00000359655.9:ENST00000471069.5:ENST00000483572.5:ENST00000422378.1:ENST00000478227.5:ENST00000486661.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	103	2	2.32451	2.799	3.27349	0.00241361	3.12677e-4	0.0453973	0.0162569
chr1	16323717	16323817	382332	0	-	0.43	(0.408,0.44]	chr1	44888	79	INTRON	INTRON	FBXO42	ENSG00000037637.11	ENST00000375592.8	protein_coding	protein_coding	protein_coding	protein_coding	7	119	2	2.77322	2.798915	2.82461	0.00241819	1.08448e-4	0.0442901	0.00880907
chr10	45987637	45987737	4430537	0	+	0.54	(0.515,0.57]	chr10	408486	18	INTRON	INTRON	TIMM23	ENSG00000265354.4	ENST00000580018.4	protein_coding	protein_coding	protein_coding	protein_coding	5	77	2	2.50953	2.79871	3.08789	0.0023952	4.83127e-4	0.0440612	0.0199261
chr3	177177402	177177502	1872248	0	-	0.35	(0.32,0.35]	chr3	187438	61	INTRON	INTRON	TBL1XR1	ENSG00000177565.18	ENST00000457928.7:ENST00000430069.5:ENST00000673974.1:ENST00000352800.10:ENST00000422442.6:ENST00000428970.5:ENST00000424913.5:ENST00000437738.5:ENST00000431421.5:ENST00000635794.1:ENST00000630796.2:ENST00000450267.5:ENST00000630833.2:ENST00000431674.5:ENST00000422066.5:ENST00000443315.5:ENST00000627825.2:ENST00000427349.5:ENST00000413084.5:ENST00000637137.1:ENST00000491623.2:ENST00000637544.1:ENST00000636187.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	48	2	2.57263	2.798665	3.0247	0.0312297	0.00671684	0.13151	0.0738715
chr1	31292306	31292406	413246	0	-	0.5	(0.476,0.515]	chr1	49808	3	SS3_PROX	SS3_PROX:INTRON	SNRNP40	ENSG00000060688.13	ENST00000263694.9	protein_coding	protein_coding	protein_coding	protein_coding	8	136	2	2.53458	2.79864	3.0627	4.37058e-4	2.02307e-4	0.0188334	0.0129814
chr17	47214319	47214419	6621401	0	+	0.5	(0.476,0.515]	chr17	645805	4	SS5_PROX	SS5_PROX:INTRON	MYL4	ENSG00000198336.9	ENST00000571981.5:ENST00000572316.5:ENST00000354968.5:ENST00000570772.5:ENST00000536623.6:ENST00000576874.5:ENST00000573747.6:ENST00000393450.5:ENST00000572303.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	42	2	2.40608	2.798635	3.19119	0.0425709	0.00325748	0.148082	0.0524329
chr7	105128350	105128448	3601275	0	-	0.5	(0.476,0.515]	chr7	336070	9	INTRON	INTRON	SRPK2	ENSG00000135250.17	ENST00000465072.5:ENST00000393651.8:ENST00000357311.7:ENST00000466917.1:ENST00000485455.1:ENST00000477925.5:ENST00000489828.5:ENST00000474770.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	42	2	2.40608	2.798635	3.19119	0.0425709	0.00325748	0.148082	0.0524329
chr16	23498368	23498467	6464466	0	-	0.464646	(0.44,0.476]	chr16	623900	22	INTRON	INTRON	GGA2	ENSG00000103365.15	ENST00000309859.8:ENST00000567468.5:ENST00000570111.5:ENST00000568799.1:ENST00000563494.5:ENST00000569300.5:ENST00000569189.2:ENST00000563047.1:ENST00000562944.5:ENST00000562117.1:ENST00000566547.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	92	2	2.55649	2.79861	3.04073	0.00670547	1.55969e-4	0.0707084	0.0106835
chr11	43363200	43363300	4776586	0	+	0.28	[0,0.28]	chr11	441679	37	INTRON	INTRON	TTC17	ENSG00000052841.15	ENST00000039989.9:ENST00000299240.10:ENST00000534347.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	59	2	2.68918	2.798575	2.90797	0.0275571	0.0118539	0.123904	0.0962115
chr3	47701077	47701177	1684257	0	-	0.25	[0,0.28]	chr3	172059	4	SS5_PROX	SS5_PROX:INTRON	SMARCC1	ENSG00000173473.11	ENST00000254480.10:ENST00000425518.5:ENST00000462198.5:ENST00000485737.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	59	2	2.68918	2.798575	2.90797	0.0275571	0.0118539	0.123904	0.0962115
chr10	77905081	77905181	4654577	0	-	0.41	(0.408,0.44]	chr10	428774	157	INTRON	INTRON	DLG5	ENSG00000151208.17	ENST00000372391.7	protein_coding	protein_coding	protein_coding	protein_coding	3	57	2	2.45003	2.798545	3.14706	0.00990006	0.00382411	0.0838372	0.0562562
chr12	57063970	57064070	5336697	0	-	0.34	(0.32,0.35]	chr12	510353	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	NEMP1	ENSG00000166881.10	ENST00000300128.9:ENST00000379391.7:ENST00000554340.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	48	2	2.68921	2.798535	2.90786	0.0230336	0.00993008	0.118056	0.0877296
chr3	177192166	177192266	1872396	0	-	0.49	(0.476,0.515]	chr3	187438	209	INTRON	INTRON	TBL1XR1	ENSG00000177565.18	ENST00000457928.7:ENST00000430069.5:ENST00000673974.1:ENST00000352800.10:ENST00000422442.6:ENST00000428970.5:ENST00000424913.5:ENST00000437738.5:ENST00000431421.5:ENST00000635794.1:ENST00000630796.2:ENST00000450267.5:ENST00000630833.2:ENST00000431674.5:ENST00000422066.5:ENST00000443315.5:ENST00000627825.2:ENST00000427349.5:ENST00000413084.5:ENST00000637137.1:ENST00000491623.2:ENST00000637544.1:ENST00000636187.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	102	2	2.59672	2.798535	3.00035	0.00109036	6.3664e-4	0.0303873	0.0228285
chr22	19119830	19119930	7551989	0	-	0.57	(0.515,0.57]	chr22	771903	300	INTRON	INTRON	DGCR2	ENSG00000070413.20	ENST00000537045.5:ENST00000545799.5:ENST00000263196.12:ENST00000389262.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	49	2	2.53845	2.79842	3.05839	0.00632226	0.00485936	0.0687526	0.0640618
chr6	36597928	36598028	2854451	0	+	0.54	(0.515,0.57]	chr6	269779	1	SS3_PROX	SS3_PROX:INTRON	SRSF3	ENSG00000112081.17	ENST00000613941.4:ENST00000373715.11:ENST00000339436.11:ENST00000477442.6:ENST00000620941.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	49	2	2.53845	2.79842	3.05839	0.00632226	0.00485936	0.0687526	0.0640618
chr3	113744244	113744343	1772360	0	-	0.515152	(0.476,0.515]	chr3	179465	31	INTRON	INTRON	NAA50	ENSG00000121579.14	ENST00000240922.8:ENST00000477813.5:ENST00000497525.5:ENST00000497255.1:ENST00000481432.5:ENST00000493900.5:ENST00000478020.1:ENST00000467022.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	68	2	2.24612	2.798355	3.35059	0.00799949	0.00171515	0.0766625	0.0381936
chr2	96862945	96863041	1181883	0	-	0.5625	(0.515,0.57]	chr2	126653	12	EXON_MRNA	EXON_MRNA:INTRON	SEMA4C	ENSG00000168758.11	ENST00000305476.10:ENST00000482925.5:ENST00000467747.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	11	102	2	1.52694	2.7983499999999997	4.06976	0.0116844	5.5596e-5	0.0962115	0.00651834
chr17	30118872	30118972	6587409	0	+	0.47	(0.44,0.476]	chr17	640557	3	INTRON	INTRON	NSRP1	ENSG00000126653.18	ENST00000540900.7:ENST00000584423.5:ENST00000612959.4:ENST00000247026.10:ENST00000577289.6:ENST00000584154.5:ENST00000394826.8:ENST00000479218.6:ENST00000475652.5:ENST00000584317.5:ENST00000583301.5:ENST00000585881.5:ENST00000467446.6:ENST00000580103.6:ENST00000581048.5:ENST00000588614.1:ENST00000589608.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	125	2	2.01434	2.79832	3.5823	0.00461697	3.73617e-5	0.0598455	0.00489903
chr19	28471480	28471579	7165809	0	-	0.434343	(0.408,0.44]	chr19	724189	32	INTRON	INTRON	ENSG00000283403:ENSG00000267243	ENSG00000283403.1:ENSG00000267243.6	ENST00000592347.5:ENST00000593065.5	lncRNA	lncRNA	lncRNA	lncRNA	4	76	2	2.73941	2.79832	2.85723	0.002744	0.00211413	0.0484022	0.0415897
chr5	104161194	104161294	2442027	0	+	0.34	(0.32,0.35]	chr5	234410	559	INTRON	INTRON	LINC02163	ENSG00000251026.2	ENST00000662211.1:ENST00000666145.1	lncRNA	lncRNA	lncRNA	lncRNA	6	120	2	2.62269	2.79824	2.97379	0.00164543	6.6835e-4	0.0369207	0.0234462
chr1	20755767	20755867	389543	0	-	0.31	(0.28,0.32]	chr1	46531	55	INTRON	INTRON	HP1BP3	ENSG00000127483.19	ENST00000438032.6:ENST00000312239.10:ENST00000375003.6:ENST00000419948.5	protein_coding	protein_coding	protein_coding	protein_coding	9	172	2	2.31374	2.798115	3.28249	7.97152e-4	5.32738e-4	0.0258804	0.0213425
chr9	131443389	131443487	4217468	0	+	0.510204	(0.476,0.515]	chr9	386746	40	INTRON	INTRON	PRRC2B	ENSG00000288701.1	ENST00000684596.1:ENST00000683519.1:ENST00000682501.1	protein_coding	protein_coding	protein_coding	protein_coding	2	42	2	2.65268	2.79809	2.9435	0.0201975	0.00929849	0.121243	0.0817766
chr4	78791397	78791497	1981535	0	+	0.27	[0,0.28]	chr4	198463	143	INTRON	INTRON	BMP2K	ENSG00000138756.19	ENST00000389010.7:ENST00000502613.3:ENST00000502871.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	112	2	1.81251	2.79799	3.78347	0.0287393	4.61323e-4	0.127066	0.0194611
chr1	21170420	21170520	393567	0	-	0.52	(0.515,0.57]	chr1	46848	3	INTRON	INTRON	EIF4G3	ENSG00000075151.24	ENST00000374935.7:ENST00000602326.6:ENST00000685872.1:ENST00000686579.1:ENST00000688741.1:ENST00000400422.6:ENST00000634879.2:ENST00000693470.1:ENST00000685814.1:ENST00000356916.7:ENST00000438975.5:ENST00000411888.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	36	2	2.60899	2.79788	2.98677	0.0232669	0.00632549	0.118148	0.0722266
chr10	68026766	68026864	4637452	0	-	0.520408	(0.515,0.57]	chr10	426404	7	INTRON	INTRON	HERC4	ENSG00000148634.16	ENST00000277817.10:ENST00000373700.9:ENST00000412272.6:ENST00000395198.7:ENST00000473533.6:ENST00000427635.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	36	2	2.60899	2.79788	2.98677	0.0232669	0.00632549	0.118148	0.0722266
chr17	82117943	82118043	6851471	0	-	0.52	(0.515,0.57]	chr17	678956	38	INTRON	INTRON	CCDC57	ENSG00000176155.21	ENST00000694881.1:ENST00000389641.9:ENST00000694882.1:ENST00000665763.1:ENST00000578910.2:ENST00000392345.6:ENST00000583593.2:ENST00000419322.6:ENST00000392346.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	36	2	2.60899	2.79788	2.98677	0.0232669	0.00632549	0.118148	0.0722266
chr12	121312501	121312600	5436765	0	-	0.424242	(0.408,0.44]	chr12	519847	21	INTRON	INTRON	ANAPC5	ENSG00000089053.13	ENST00000261819.8:ENST00000535641.5:ENST00000541887.5:ENST00000534976.5:ENST00000441917.6:ENST00000539079.5:ENST00000544314.5:ENST00000535482.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	142	2	2.72384	2.79787	2.8719	4.77241e-4	1.3686e-4	0.0202392	0.0100759
chr19	15237587	15237686	7146420	0	-	0.272727	[0,0.28]	chr19	721841	22	UTR3	UTR3:EXON_MRNA	BRD4	ENSG00000141867.19	ENST00000679869.1:ENST00000263377.6	protein_coding	protein_coding	protein_coding	protein_coding	5	131	2	2.77047	2.79781	2.82515	0.00505301	8.72498e-4	0.0621733	0.0268436
chr2	151422849	151422949	893338	0	+	0.28	[0,0.28]	chr2	98902	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	RIF1	ENSG00000080345.18	ENST00000453091.6:ENST00000428287.6:ENST00000444746.7:ENST00000243326.9:ENST00000414861.6:ENST00000430328.6:ENST00000498041.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	80	2	2.6958	2.79781	2.89982	0.0158893	0.00456758	0.101453	0.0622215
chr7	23467571	23467671	3503638	0	-	0.42	(0.408,0.44]	chr7	326911	4	SS5_PROX	SS5_PROX:INTRON	IGF2BP3	ENSG00000136231.14	ENST00000258729.8:ENST00000421467.6:ENST00000468263.5:ENST00000491719.5:ENST00000476938.5:ENST00000468005.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	164	2	2.25998	2.7978	3.33562	0.001078	2.6898e-5	0.030243	0.00408175
chr5	104155195	104155295	2441967	0	+	0.46	(0.44,0.476]	chr5	234410	499	INTRON	INTRON	LINC02163	ENSG00000251026.2	ENST00000662211.1:ENST00000666145.1	lncRNA	lncRNA	lncRNA	lncRNA	9	157	2	2.65397	2.797795	2.94162	2.19841e-4	1.46942e-4	0.0130082	0.0110957
chrX	154795567	154795666	7915512	0	-	0.464646	(0.44,0.476]	chrX	806172	29	INTRON	INTRON	MPP1	ENSG00000130830.15	ENST00000369534.8:ENST00000413259.7:ENST00000439370.5:ENST00000393531.5:ENST00000453245.5:ENST00000494170.1:ENST00000462825.5:ENST00000393529.5:ENST00000475943.5:ENST00000428488.1:ENST00000417435.5:ENST00000369531.1:ENST00000471821.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	115	2	2.5914	2.797795	3.00419	0.00110055	3.14221e-4	0.0304914	0.0159645
chr1	21912887	21912987	397917	0	-	0.54	(0.515,0.57]	chr1	47777	162	INTRON	INTRON	HSPG2	ENSG00000142798.20	ENST00000374695.8	protein_coding	protein_coding	protein_coding	protein_coding	2	36	2	2.76354	2.79771	2.83188	0.0147344	0.0108207	0.0983813	0.0920575
chr16	85548769	85548868	6415318	0	+	0.545455	(0.515,0.57]	chr16	615465	1895	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	2	36	2	2.76354	2.79771	2.83188	0.0147344	0.0108207	0.0983813	0.0920575
chrX	48817392	48817459	7659200	0	+	0.552239	(0.515,0.57]	chrX	783999	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	HDAC6	ENSG00000094631.21	ENST00000376619.6:ENST00000477528.5:ENST00000334136.11:ENST00000643659.1:ENST00000643374.1:ENST00000644068.1:ENST00000643934.1:ENST00000647398.1:ENST00000486227.5:ENST00000645643.1:ENST00000486665.5:ENST00000470942.1:ENST00000483506.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	36	2	2.76354	2.79771	2.83188	0.0147344	0.0108207	0.0983813	0.0920575
chr20	33666080	33666180	7328981	0	-	0.46	(0.44,0.476]	chr20	746392	1	SS5_PROX	SS5_PROX:INTRON	NECAB3	ENSG00000125967.17	ENST00000375238.8:ENST00000246190.11:ENST00000488489.5:ENST00000485399.5:ENST00000494174.5:ENST00000480994.5:ENST00000606690.5:ENST00000439478.5:ENST00000607805.5:ENST00000493590.1:ENST00000606106.1:ENST00000606699.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	115	2	2.11598	2.79759	3.4792	0.0035604	1.09781e-4	0.0548355	0.00942675
chr10	119656312	119656411	4529500	0	+	0.424242	(0.408,0.44]	chr10	417772	41	INTRON	INTRON	BAG3	ENSG00000151929.10	ENST00000369085.8	protein_coding	protein_coding	protein_coding	protein_coding	4	80	2	2.44674	2.7975250000000003	3.14831	0.00868283	5.86664e-4	0.0842798	0.022457
chr11	119000736	119000830	4874000	0	+	0.351064	(0.35,0.378]	chr11	455378	13	INTRON	INTRON	CENATAC	ENSG00000186166.9	ENST00000334418.6:ENST00000524670.5:ENST00000526463.5:ENST00000532132.5:ENST00000580556.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	45	2	2.66547	2.797495	2.92952	0.0233639	0.00881187	0.118323	0.084878
chr17	31939785	31939885	6595703	0	+	0.43	(0.408,0.44]	chr17	641541	1	SS3_PROX	SS3_PROX:INTRON	SUZ12	ENSG00000178691.11	ENST00000322652.10:ENST00000580398.1	protein_coding	protein_coding	protein_coding	protein_coding	5	90	2	2.70586	2.797495	2.88913	0.00185044	9.14702e-4	0.0388609	0.027804
chr19	52618765	52618850	7206405	0	-	0.376471	(0.35,0.378]	chr19	731379	1	EXON_MRNA	EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ZNF83	ENSG00000167766.20	ENST00000600714.5:ENST00000601257.5:ENST00000301096.8:ENST00000536937.6:ENST00000597597.1:ENST00000594682.6:ENST00000545872.1:ENST00000597161.6:ENST00000687234.1:ENST00000595939.5:ENST00000596930.5:ENST00000598536.5:ENST00000601140.1:ENST00000595171.5:ENST00000601237.5:ENST00000596440.5:ENST00000602232.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	45	2	2.66547	2.797495	2.92952	0.0233639	0.00881187	0.118323	0.084878
chr20	58898283	58898377	7291082	0	+	0.425532	(0.408,0.44]	chr20	741831	10	EXON_MRNA	EXON_MRNA:INTRON	GNAS	ENSG00000087460.29	ENST00000313949.11:ENST00000371075.7:ENST00000419558.7:ENST00000371098.6:ENST00000657090.1:ENST00000453292.7:ENST00000306090.12:ENST00000491348.5:ENST00000472183.6:ENST00000462499.6:ENST00000482112.6:ENST00000663479.2:ENST00000493744.5:ENST00000490374.6:ENST00000467227.6:ENST00000676826.2:ENST00000481768.6:ENST00000371100.9:ENST00000371102.8:ENST00000464624.7:ENST00000349036.9:ENST00000423897.7:ENST00000464960.5:ENST00000488546.6:ENST00000667293.2:ENST00000481039.6:ENST00000467321.6:ENST00000477931.5:ENST00000485673.6:ENST00000470512.6:ENST00000464788.6:ENST00000469431.6:ENST00000604005.6:ENST00000478585.6:ENST00000480975.5:ENST00000480232.6:ENST00000484504.5:ENST00000683015.1:ENST00000461152.6:ENST00000371095.7:ENST00000265620.11:ENST00000354359.12:ENST00000371085.8:ENST00000468895.6:ENST00000371081.5:ENST00000338783.7:ENST00000682803.1:ENST00000488652.6:ENST00000476935.6:ENST00000492907.6:ENST00000603546.2:ENST00000684284.1:ENST00000682134.1:ENST00000682829.1:ENST00000483387.2:ENST00000487862.5:ENST00000496934.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	90	2	2.70586	2.797495	2.88913	0.00185044	9.14702e-4	0.0388609	0.027804
chr15	90559736	90559836	6100026	0	+	0.53	(0.515,0.57]	chr15	580749	192	INTRON	INTRON	CRTC3	ENSG00000140577.17	ENST00000268184.11:ENST00000420329.6:ENST00000691029.1:ENST00000686240.1:ENST00000560098.5:ENST00000561218.5:ENST00000692149.1:ENST00000558619.5:ENST00000560927.1:ENST00000687075.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	37	2	2.34087	2.7974949999999996	3.25412	0.0469761	0.00224554	0.151917	0.0435144
chr17	22109393	22109493	6578757	0	+	0.55	(0.515,0.57]	chr17	639556	181	INTRON	INTRON	UBBP4	ENSG00000263563.7	ENST00000648259.1:ENST00000688301.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	2	37	2	2.34087	2.7974949999999996	3.25412	0.0469761	0.00224554	0.151917	0.0435144
chr6	12043339	12043439	2814539	0	+	0.36	(0.35,0.378]	chr6	264800	42	INTRON	INTRON	HIVEP1	ENSG00000095951.17	ENST00000491710.5:ENST00000487103.5:ENST00000379388.7:ENST00000627968.2:ENST00000541134.5:ENST00000442081.6:ENST00000478545.1	protein_coding	protein_coding	protein_coding	protein_coding	5	85	2	2.42249	2.797465	3.17244	0.00487788	0.0016343	0.0607461	0.0372392
chr22	20936639	20936739	7480710	0	+	0.41	(0.408,0.44]	chr22	763096	20	INTRON	INTRON	CRKL	ENSG00000099942.13	ENST00000354336.8:ENST00000411769.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	125	2	2.34467	2.79737	3.25007	7.0284e-4	3.61891e-4	0.0241881	0.0176126
chr16	46965780	46965875	6479850	0	-	0.378947	(0.378,0.408]	chr16	626860	6	INTRON	INTRON	DNAJA2	ENSG00000069345.12	ENST00000317089.10:ENST00000563158.1:ENST00000617000.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	43	2	2.60296	2.7973299999999997	2.9917	0.0267851	0.0068789	0.123349	0.0749442
chr9	123845177	123845276	4345175	0	-	0.393939	(0.378,0.408]	chr9	399130	468	INTRON	INTRON	DENND1A	ENSG00000119522.17	ENST00000373624.6:ENST00000394215.7:ENST00000373620.7:ENST00000373618.1	protein_coding	protein_coding	protein_coding	protein_coding	2	43	2	2.60296	2.7973299999999997	2.9917	0.0267851	0.0068789	0.123349	0.0749442
chr11	118779131	118779231	5046247	0	-	0.4	(0.378,0.408]	chr11	475787	1	SS5_PROX	SS5_PROX:INTRON	DDX6	ENSG00000110367.14	ENST00000534980.7:ENST00000620157.4:ENST00000526070.2:ENST00000525082.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	43	2	2.66785	2.79725	2.92665	0.0224639	0.0086017	0.11692	0.083729
chr15	56654007	56654102	6184321	0	-	0.378947	(0.378,0.408]	chr15	589538	17	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	ZNF280D	ENSG00000137871.21	ENST00000267807.12:ENST00000559237.5:ENST00000558067.5:ENST00000560002.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	43	2	2.66785	2.79725	2.92665	0.0224639	0.0086017	0.11692	0.083729
chr21	6490563	6490661	7425378	0	-	0.408163	(0.378,0.408]	chr21	757471	14	EXON_MRNA	EXON_MRNA:INTRON	ENSG00000275895	ENSG00000275895.7	ENST00000610664.5:ENST00000623375.3:ENST00000639996.1:ENST00000620065.4:ENST00000624739.1:ENST00000619610.2:ENST00000636315.1:ENST00000637031.1:ENST00000636177.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	43	2	2.66785	2.79725	2.92665	0.0224639	0.0086017	0.11692	0.083729
chr7	4769845	4769945	3270801	0	+	0.5	(0.476,0.515]	chr7	303926	75	UTR3	UTR3:EXON_MRNA	FOXK1	ENSG00000164916.11	ENST00000328914.5	protein_coding	protein_coding	protein_coding	protein_coding	3	57	2	2.58253	2.79725	3.01197	0.00633162	0.00600101	0.0722266	0.0674604
chr9	131176206	131176303	4216150	0	+	0.43299	(0.408,0.44]	chr9	386623	7	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	NUP214	ENSG00000126883.19	ENST00000695497.1:ENST00000695498.1:ENST00000695496.1:ENST00000695495.1:ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000525980.5:ENST00000526346.5:ENST00000531929.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	90	2	2.67392	2.797125	2.92033	0.00162151	0.00106946	0.0367655	0.0300133
chr2	200853206	200853305	1309988	0	-	0.292929	(0.28,0.32]	chr2	137003	3	UTR3	UTR3:EXON_MRNA	CLK1	ENSG00000013441.17	ENST00000321356.9:ENST00000461981.5:ENST00000464454.1:ENST00000473565.5:ENST00000432425.5:ENST00000472679.1:ENST00000409769.6:ENST00000409403.6:ENST00000434813.3:ENST00000461326.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	53	2	2.32871	2.79711	3.26551	0.0581621	0.0030714	0.167723	0.0509893
chr6	140179078	140179178	2968246	0	+	0.39	(0.378,0.408]	chr6	279015	300	INTRON	INTRON	ENSG00000288714	ENSG00000288714.1	ENST00000683950.1	lncRNA	lncRNA	lncRNA	lncRNA	6	107	2	2.22997	2.79704	3.36411	0.00477089	1.36472e-4	0.0602209	0.010058
chr3	152325021	152325121	1535549	0	+	0.45	(0.44,0.476]	chr3	159996	227	INTRON	INTRON	MBNL1	ENSG00000152601.18	ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000495875.6:ENST00000324210.10:ENST00000493459.5:ENST00000459747.1:ENST00000460591.5:ENST00000545754.5:ENST00000357472.7:ENST00000324196.9:ENST00000498502.5:ENST00000463374.5:ENST00000485910.5:ENST00000465907.6:ENST00000492948.5:ENST00000485509.5:ENST00000464596.5	protein_coding	protein_coding	protein_coding	protein_coding	7	114	2	2.50351	2.79695	3.09039	7.4601e-4	5.11411e-4	0.0251072	0.0203232
chr6	161066100	161066200	3025239	0	+	0.29	(0.28,0.32]	chr6	282325	158	INTRON	INTRON	MAP3K4	ENSG00000085511.20	ENST00000366919.6:ENST00000392142.9:ENST00000542952.5:ENST00000366920.6:ENST00000348824.11:ENST00000544041.5:ENST00000490904.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	95	2	2.71415	2.796745	2.87934	0.005045	0.00189034	0.0621586	0.0402736
chrX	77924789	77924885	7685175	0	+	0.5625	(0.515,0.57]	chrX	786839	2	INTRON	INTRON	ENSG00000248503:ATP7A:PGK1	ENSG00000248503.3:ENSG00000165240.22:ENSG00000102144.15	ENST00000686088.1:ENST00000693051.1:ENST00000341514.11:ENST00000688746.1:ENST00000688338.1:ENST00000685264.1:ENST00000686515.1:ENST00000687086.1:ENST00000689530.1:ENST00000686999.1:ENST00000644362.1:ENST00000343533.10:ENST00000686543.1:ENST00000686033.1:ENST00000692908.1:ENST00000686688.1:ENST00000686480.1:ENST00000689649.1:ENST00000686416.1:ENST00000682742.2:ENST00000685434.1:ENST00000693387.1:ENST00000688249.1:ENST00000689891.1:ENST00000691152.1:ENST00000688889.1:ENST00000687984.1:ENST00000685208.1:ENST00000687599.1:ENST00000685885.1:ENST00000687082.1:ENST00000693167.1:ENST00000692729.1:ENST00000645454.1:ENST00000686896.1:ENST00000689731.1:ENST00000684798.1:ENST00000686560.1:ENST00000686464.1:ENST00000686050.1:ENST00000602791.2:ENST00000686133.1:ENST00000645094.1:ENST00000689541.1:ENST00000642651.1:ENST00000693398.1:ENST00000688165.1:ENST00000692110.1:ENST00000687325.1:ENST00000689767.1:ENST00000687628.1:ENST00000691456.1	protein_coding	protein_coding	protein_coding:transcribed_processed_pseudogene	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	49	2	2.76354	2.79674	2.82994	0.0147344	0.00168661	0.0983813	0.0381778
chr1	110406771	110406858	521989	0	-	0.402299	(0.378,0.408]	chr1	61333	5	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	LAMTOR5	ENSG00000134248.14	ENST00000464240.1:ENST00000474861.6:ENST00000483260.5:ENST00000256644.8:ENST00000602318.6:ENST00000531779.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	179	2	2.50292	2.7967250000000003	3.0905300000000002	5.01571e-4	3.85412e-5	0.0207034	0.00500557
chr16	23558779	23558873	6323061	0	+	0.521277	(0.515,0.57]	chr16	605534	1	INTRON	INTRON	UBFD1	ENSG00000103353.16	ENST00000567212.5:ENST00000395878.8:ENST00000567264.1:ENST00000571064.5:ENST00000566669.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	37	2	2.56306	2.796715	3.03037	0.0247751	0.00608732	0.131869	0.0676501
chr16	71753987	71754087	6513905	0	-	0.53	(0.515,0.57]	chr16	631121	1	SS3_PROX	SS3_PROX:INTRON	AP1G1	ENSG00000166747.13	ENST00000299980.9:ENST00000569748.5:ENST00000393512.7:ENST00000565009.5:ENST00000565642.5:ENST00000568327.5:ENST00000566179.1:ENST00000569044.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	58	2	2.11384	2.796715	3.47959	0.0118599	8.38022e-4	0.0899583	0.0263691
chr18	802927	803027	6940613	0	-	0.52	(0.515,0.57]	chr18	686527	49	INTRON	INTRON	YES1	ENSG00000176105.14	ENST00000584307.5:ENST00000314574.5:ENST00000577611.1:ENST00000581960.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	37	2	2.56306	2.796715	3.03037	0.0247751	0.00608732	0.131869	0.0676501
chr7	128537029	128537129	3407414	0	+	0.54	(0.515,0.57]	chr7	318333	29	INTRON	INTRON	ENSG00000280828	ENSG00000280828.1	ENST00000479267.2	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	2	37	2	2.56306	2.796715	3.03037	0.0247751	0.00608732	0.131869	0.0676501
chr17	22092906	22093006	6578592	0	+	0.29	(0.28,0.32]	chr17	639556	16	INTRON	INTRON	UBBP4	ENSG00000263563.7	ENST00000648259.1:ENST00000688301.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	3	71	2	2.78004	2.79669	2.81334	0.0193244	0.00248627	0.108861	0.0461207
chr2	69830851	69830951	804758	0	+	0.29	(0.28,0.32]	chr2	89785	3	INTRON	INTRON	GMCL1	ENSG00000087338.5	ENST00000282570.4:ENST00000468386.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	71	2	2.78004	2.79669	2.81334	0.0193244	0.00248627	0.108861	0.0461207
chr12	104502202	104502302	5211136	0	+	0.55	(0.515,0.57]	chr12	493315	443	INTRON	INTRON	CHST11	ENSG00000171310.11	ENST00000303694.6:ENST00000547956.1:ENST00000549260.5:ENST00000546689.1	protein_coding	protein_coding	protein_coding	protein_coding	7	80	2	1.6151	2.7965549999999997	3.97801	0.0189412	9.14583e-5	0.118428	0.00850096
chr6	98937267	98937366	3165483	0	-	0.383838	(0.378,0.408]	chr6	295225	20	INTRON	INTRON	FBXL4	ENSG00000112234.9	ENST00000369244.7:ENST00000229971.2	protein_coding	protein_coding	protein_coding	protein_coding	3	58	2	2.74646	2.796545	2.84663	0.0133954	0.00271684	0.0946278	0.0481064
chr8	65608897	65608996	3959458	0	-	0.313131	(0.28,0.32]	chr8	363264	30	INTRON	INTRON	ARMC1	ENSG00000104442.10	ENST00000276569.8:ENST00000458464.3:ENST00000528721.5:ENST00000518908.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	53	2	2.67453	2.79652	2.91851	0.021289	0.0130672	0.123318	0.093385
chr2	151449827	151449925	893624	0	+	0.459184	(0.44,0.476]	chr2	98976	29	INTRON	INTRON	RIF1	ENSG00000080345.18	ENST00000453091.6:ENST00000428287.6:ENST00000444746.7:ENST00000243326.9:ENST00000414861.6:ENST00000430328.6	protein_coding	protein_coding	protein_coding	protein_coding	7	123	2	2.50297	2.796435	3.0899	0.00135188	1.17872e-4	0.0336321	0.00930884
chr16	88729535	88729633	6539633	0	-	0.581633	(0.57,1]	chr16	633912	15	INTRON	INTRON	PIEZO1	ENSG00000103335.22	ENST00000301015.14	protein_coding	protein_coding	protein_coding	protein_coding	8	71	2	2.36923	2.796395	3.22356	7.89579e-4	2.85055e-5	0.0259532	0.00423282
chr6	143183171	143183270	2976411	0	+	0.464646	(0.44,0.476]	chr6	279149	176	INTRON	INTRON	AIG1	ENSG00000146416.19	ENST00000367601.8:ENST00000447498.5:ENST00000646199.1:ENST00000357847.9:ENST00000629020.2:ENST00000275235.8:ENST00000494282.6:ENST00000458219.1:ENST00000470265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	157	2	2.63819	2.79623	2.95427	3.65643e-4	8.41842e-5	0.0177538	0.00775456
chr16	29603634	29603734	6471637	0	-	0.42	(0.408,0.44]	chr16	625301	88	INTRON	INTRON	ENSG00000288632	ENSG00000288632.1	ENST00000675579.1	lncRNA	lncRNA	lncRNA	lncRNA	6	103	2	2.41796	2.796195	3.17443	0.0015483	5.19132e-4	0.0363194	0.0209322
chr11	46068541	46068641	4944714	0	-	0.36	(0.35,0.378]	chr11	463349	177	INTRON	INTRON	PHF21A	ENSG00000135365.17	ENST00000676320.1:ENST00000323180.10:ENST00000530587.6:ENST00000693049.1:ENST00000690620.1:ENST00000418153.6:ENST00000525676.6:ENST00000689695.1:ENST00000685188.1:ENST00000532883.5:ENST00000524497.5:ENST00000531959.5:ENST00000687985.1:ENST00000693122.1:ENST00000529734.5:ENST00000529782.5:ENST00000688222.1:ENST00000691784.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	46	2	2.32443	2.796185	3.26794	0.0544216	0.00257067	0.164972	0.0466761
chr2	144303103	144303203	1239916	0	-	0.37	(0.35,0.378]	chr2	131614	79	INTRON	INTRON	GTDC1	ENSG00000121964.15	ENST00000682281.1:ENST00000542155.5:ENST00000463875.6:ENST00000417450.5:ENST00000429978.5:ENST00000467352.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	46	2	2.32443	2.796185	3.26794	0.0544216	0.00257067	0.164972	0.0466761
chr1	114777744	114777842	528734	0	-	0.316327	(0.28,0.32]	chr1	62389	9	INTRON	INTRON	SIKE1	ENSG00000052723.12	ENST00000060969.6:ENST00000369528.9:ENST00000369524.5:ENST00000510745.5:ENST00000506320.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	52	2	2.51488	2.79616	3.07744	0.0380957	0.00604536	0.141678	0.0700813
chr1	226299492	226299590	647760	0	-	0.295918	(0.28,0.32]	chr1	76746	13	INTRON	INTRON	LIN9	ENSG00000183814.16	ENST00000460719.5:ENST00000366808.6:ENST00000328205.9:ENST00000681046.1:ENST00000481685.1:ENST00000359525.2	protein_coding	protein_coding	protein_coding	protein_coding	2	52	2	2.51488	2.79616	3.07744	0.0380957	0.00604536	0.141678	0.0700813
chr4	109443349	109443448	2018666	0	+	0.30303	(0.28,0.32]	chr4	200748	90	INTRON	INTRON	SEC24B	ENSG00000138802.11	ENST00000504968.6:ENST00000399100.6:ENST00000265175.5	protein_coding	protein_coding	protein_coding	protein_coding	2	52	2	2.51488	2.79616	3.07744	0.0380957	0.00604536	0.141678	0.0700813
chr5	146475921	146476020	2515797	0	+	0.30303	(0.28,0.32]	chr5	240338	40	INTRON	INTRON	TCERG1	ENSG00000113649.13	ENST00000507175.5:ENST00000296702.9:ENST00000679501.2:ENST00000394421.7:ENST00000549332.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	52	2	2.51488	2.79616	3.07744	0.0380957	0.00604536	0.141678	0.0700813
chr21	45284968	45285068	7469355	0	-	0.52	(0.515,0.57]	chr21	761308	3	SS5_PROX	SS5_PROX:INTRON	POFUT2	ENSG00000186866.17	ENST00000331343.11:ENST00000334538.13:ENST00000612472.4:ENST00000349485.10:ENST00000451615.1:ENST00000493524.5:ENST00000468360.5:ENST00000493811.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	77	2	2.763	2.79608	2.82916	0.00257143	4.25151e-4	0.045134	0.018441
chr1	226063976	226064069	327780	0	+	0.311828	(0.28,0.32]	chr1	37744	1	UTR5	UTR5:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	H3-3A	ENSG00000163041.13	ENST00000366816.5:ENST00000366814.3:ENST00000366815.10:ENST00000653960.1:ENST00000655399.1:ENST00000667897.1:ENST00000656829.1:ENST00000666609.1:ENST00000661429.1:ENST00000366813.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	9	172	2	2.32858	2.796075	3.26357	7.38686e-4	5.78348e-4	0.0248401	0.0223209
chr10	96834839	96834939	4502990	0	+	0.32	(0.28,0.32]	chr10	414529	6	INTRON	INTRON	LCOR	ENSG00000196233.14	ENST00000676067.1:ENST00000676257.1:ENST00000676187.1:ENST00000675151.1:ENST00000675687.1:ENST00000675251.1:ENST00000676123.1:ENST00000371103.8:ENST00000675471.1:ENST00000421806.4:ENST00000675902.1:ENST00000540664.6:ENST00000676414.1:ENST00000675537.1:ENST00000675117.1:ENST00000675125.1:ENST00000356016.7:ENST00000371097.8:ENST00000676381.1:ENST00000674796.1:ENST00000674725.1:ENST00000675971.1:ENST00000676373.1:ENST00000676314.1:ENST00000675915.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	52	2	2.73077	2.7959500000000004	2.86113	0.0220748	0.0122675	0.115395	0.0969406
chr7	76581108	76581208	3340679	0	+	0.31	(0.28,0.32]	chr7	311170	292	INTRON	INTRON	ENSG00000205485	ENSG00000205485.13	ENST00000418663.5:ENST00000450661.1:ENST00000423084.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	2	52	2	2.73077	2.7959500000000004	2.86113	0.0220748	0.0122675	0.115395	0.0969406
chr8	119831918	119832012	4040059	0	-	0.510638	(0.476,0.515]	chr8	368410	3	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TAF2	ENSG00000064313.13	ENST00000378164.7:ENST00000685503.1:ENST00000690808.1:ENST00000692707.1:ENST00000685202.1:ENST00000688645.1:ENST00000685684.1:ENST00000689399.1:ENST00000685876.1:ENST00000689341.1:ENST00000691057.1:ENST00000686098.1:ENST00000690922.1:ENST00000685663.1:ENST00000692518.1:ENST00000688037.1:ENST00000691237.1:ENST00000684862.1:ENST00000685755.1:ENST00000691880.1:ENST00000523904.2:ENST00000689919.1:ENST00000685824.1:ENST00000685993.1:ENST00000692829.1:ENST00000692916.1:ENST00000686879.1:ENST00000685235.1:ENST00000690144.1:ENST00000689164.1:ENST00000691847.1:ENST00000688215.1:ENST00000690031.1:ENST00000689867.1:ENST00000689873.1:ENST00000521007.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	114	2	2.41328	2.7959449999999997	3.17861	0.00355364	1.08727e-4	0.0547657	0.00936424
chr16	2707455	2707553	6279798	0	+	0.663265	(0.57,1]	chr16	600752	1	UTR3	UTR3:EXON_MRNA	KCTD5	ENSG00000167977.9	ENST00000301738.9:ENST00000564195.1	protein_coding	protein_coding	protein_coding	protein_coding	4	36	2	2.24434	2.795925	3.34751	0.00677343	0.00122677	0.074225	0.0320791
chr6	169696562	169696662	3267075	0	-	0.53	(0.515,0.57]	chr6	303259	11	INTRON	INTRON	WDR27	ENSG00000184465.16	ENST00000448612.6:ENST00000648472.1:ENST00000423258.5:ENST00000647790.1:ENST00000647873.1:ENST00000649303.1:ENST00000647889.1:ENST00000648017.1:ENST00000650296.1:ENST00000546953.1:ENST00000649806.1:ENST00000474018.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	77	2	2.496	2.7959	3.0958	0.00225531	5.63557e-4	0.0436331	0.0219303
chr19	49931921	49932021	7091807	0	+	0.36	(0.35,0.378]	chr19	710640	1	SS3_PROX	SS3_PROX:INTRON	ATF5	ENSG00000169136.13	ENST00000595125.5:ENST00000423777.7:ENST00000597227.5:ENST00000596658.1	protein_coding	protein_coding	protein_coding	protein_coding	5	95	2	2.72497	2.79583	2.86669	0.0198266	1.61757e-4	0.109608	0.0109774
chr19	230075	230164	7108999	0	-	0.449438	(0.44,0.476]	chr19	713716	6	EXON_MRNA	EXON_MRNA:INTRON	LINC01002	ENSG00000282508.2	ENST00000632624.2:ENST00000633179.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	4	67	2	2.08211	2.795825	3.50954	0.0130715	0.00116647	0.0996047	0.0312127
chr22	21514029	21514129	7560231	0	-	0.49	(0.476,0.515]	chr22	773320	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	PI4KAP2	ENSG00000183506.17	ENST00000450651.5:ENST00000467443.5:ENST00000479693.1:ENST00000476537.1:ENST00000491562.5	transcribed_unitary_pseudogene	retained_intron	transcribed_unitary_pseudogene	retained_intron:processed_transcript	12	183	2	2.13456	2.795785	3.45701	0.00108847	1.2733e-5	0.0303873	0.00265846
chr12	68822162	68822256	5163122	0	+	0.276596	[0,0.28]	chr12	488916	9	INTRON	INTRON	MDM2	ENSG00000135679.27	ENST00000258149.11:ENST00000393412.7:ENST00000311420.13:ENST00000393417.8:ENST00000258148.11:ENST00000539479.6:ENST00000523991.5:ENST00000543323.5:ENST00000393415.7:ENST00000393416.7:ENST00000481186.6:ENST00000545204.2:ENST00000544561.6:ENST00000665020.1:ENST00000666617.1:ENST00000671567.1:ENST00000393410.5:ENST00000496959.5:ENST00000299252.8:ENST00000360430.6:ENST00000517852.5:ENST00000546048.5:ENST00000540352.5:ENST00000542502.5:ENST00000537182.5:ENST00000536089.5:ENST00000393413.7:ENST00000350057.9:ENST00000348801.7:ENST00000478070.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	59	2	2.49527	2.79557	3.09587	0.0436497	0.00651565	0.14882	0.0735232
chr3	9408928	9409027	1358997	0	+	0.272727	[0,0.28]	chr3	142655	106	INTRON	INTRON	SETD5	ENSG00000168137.20	ENST00000402198.7:ENST00000431285.5:ENST00000683012.1:ENST00000463180.5:ENST00000478475.5:ENST00000415650.5:ENST00000682536.1:ENST00000663774.1:ENST00000665872.1:ENST00000666307.1:ENST00000693430.1:ENST00000691925.1:ENST00000684606.1:ENST00000691175.1:ENST00000688835.1:ENST00000683262.1:ENST00000443339.5:ENST00000406341.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	59	2	2.49527	2.79557	3.09587	0.0436497	0.00651565	0.14882	0.0735232
chr6	166338547	166338647	3263080	0	-	0.49	(0.476,0.515]	chr6	302947	68	INTRON	INTRON	SFT2D1	ENSG00000198818.10	ENST00000361731.4:ENST00000487841.5:ENST00000478705.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	93	2	2.76855	2.79553	2.82251	0.00244302	6.78359e-4	0.0456956	0.023827
chr17	66515461	66515561	6664427	0	+	0.41	(0.408,0.44]	chr17	650332	188	INTRON	INTRON	PRKCA	ENSG00000154229.12	ENST00000413366.8:ENST00000578063.5:ENST00000284384.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	85	2	1.96132	2.79552	3.62972	0.00701866	7.19047e-4	0.0754576	0.0246202
chr20	35737367	35737467	7336508	0	-	0.45	(0.44,0.476]	chr20	747495	4	INTRON	INTRON	RBM39	ENSG00000131051.24	ENST00000253363.11:ENST00000639702.1:ENST00000656873.1:ENST00000463004.5:ENST00000361162.10:ENST00000461283.5:ENST00000403542.6:ENST00000338163.10:ENST00000528062.7:ENST00000429968.5:ENST00000444878.5:ENST00000665058.1:ENST00000374038.7:ENST00000412738.5:ENST00000434927.5:ENST00000425184.5:ENST00000481037.5:ENST00000455343.5:ENST00000416108.5:ENST00000426951.5:ENST00000477334.1:ENST00000442447.5:ENST00000449489.5:ENST00000433027.5:ENST00000487604.1:ENST00000453310.5:ENST00000416529.5:ENST00000397370.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	191	2	2.30297	2.79544	3.28791	0.0012225	3.69133e-6	0.0320622	0.00125618
chr17	42292561	42292659	6611066	0	+	0.612245	(0.57,1]	chr17	643991	1	INTRON	INTRON	STAT5A	ENSG00000126561.18	ENST00000345506.8:ENST00000546010.6:ENST00000677893.1:ENST00000676631.1:ENST00000590726.7:ENST00000678903.1:ENST00000590949.6:ENST00000676585.1:ENST00000588868.5:ENST00000677301.1	protein_coding	protein_coding	protein_coding	protein_coding	5	41	2	2.0955	2.7953349999999997	3.49517	0.00622614	6.03609e-4	0.0718276	0.0226059
chr9	94438400	94438464	4162804	0	+	0.578125	(0.57,1]	chr9	379500	1	CDS	CDS:EXON_MRNA	MFSD14B	ENSG00000148110.17	ENST00000375344.8	protein_coding	protein_coding	protein_coding	protein_coding	5	41	2	2.02689	2.7952899999999996	3.56369	0.00839052	4.26536e-4	0.0823837	0.0189958
chr16	30725709	30725801	6338936	0	+	0.271739	[0,0.28]	chr16	607821	7	UTR3	UTR3:EXON_MRNA:INTRON	SRCAP	ENSG00000080603.17	ENST00000262518.9:ENST00000395059.6:ENST00000483083.3	protein_coding	protein_coding	protein_coding	protein_coding	5	112	2	2.37513	2.79528	3.21543	0.00629013	0.00288663	0.0687434	0.0494641
chr1	51497907	51498006	454144	0	-	0.484848	(0.476,0.515]	chr1	54447	162	INTRON	INTRON	EPS15	ENSG00000085832.17	ENST00000371733.8:ENST00000371730.6:ENST00000371727.5:ENST00000471391.1:ENST00000465467.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	67	2	2.48789	2.795265	3.10264	0.00543163	0.00256502	0.0645052	0.0466761
chr5	138179577	138179659	2494543	0	+	0.463415	(0.44,0.476]	chr5	238321	4	EXON_MRNA	EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	KIF20A	ENSG00000112984.12	ENST00000513276.5:ENST00000394894.8:ENST00000508792.5:ENST00000511638.5:ENST00000503417.1:ENST00000504621.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	76	2	2.15726	2.7951550000000003	3.43305	0.00508124	0.00159668	0.0646039	0.0364566
chr12	122096062	122096162	5240035	0	+	0.39	(0.378,0.408]	chr12	497496	164	INTRON	INTRON	MLXIP	ENSG00000175727.14	ENST00000319080.12	protein_coding	protein_coding	protein_coding	protein_coding	4	70	2	2.04622	2.79514	3.54406	0.0149927	0.00110718	0.107704	0.0306086
chr20	62928910	62929006	7362480	0	-	0.395833	(0.378,0.408]	chr20	751215	4	EXON_LNCRNA	EXON_LNCRNA:INTRON	DIDO1:ENSG00000273759	ENSG00000101191.17:ENSG00000273759.1	ENST00000266070.8:ENST00000370371.8:ENST00000619319.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	9	155	2	2.44769	2.795135	3.14258	4.1425e-4	1.5815e-4	0.0181805	0.0114628
chr8	140877972	140878071	4078832	0	-	0.444444	(0.44,0.476]	chr8	370526	132	INTRON	INTRON	PTK2	ENSG00000169398.20	ENST00000696786.1:ENST00000522684.5:ENST00000395218.3:ENST00000519654.5:ENST00000521059.5:ENST00000517887.5:ENST00000519993.5:ENST00000340930.7:ENST00000519419.5:ENST00000524357.5:ENST00000521791.5:ENST00000523067.5:ENST00000520828.5:ENST00000520475.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	41	2	1.35267	2.7951099999999998	4.23755	0.060678	0.0263357	0.192323	0.122221
chr17	42473538	42473638	6611438	0	+	0.4	(0.378,0.408]	chr17	644092	22	INTRON	INTRON	ATP6V0A1	ENSG00000033627.17	ENST00000393829.6:ENST00000343619.9:ENST00000537728.5:ENST00000588901.5:ENST00000264649.10:ENST00000585525.5:ENST00000544137.5:ENST00000589727.5:ENST00000592324.1:ENST00000587375.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	128	2	2.42026	2.795095	3.16993	0.00213386	7.75659e-5	0.041773	0.00735438
chr12	124779984	124780084	5445726	0	-	0.52	(0.515,0.57]	chr12	521214	10	INTRON	INTRON	SCARB1	ENSG00000073060.17	ENST00000339570.9:ENST00000261693.11:ENST00000679605.1:ENST00000681686.1:ENST00000680926.1:ENST00000680556.1:ENST00000680982.1:ENST00000680596.1:ENST00000681555.1:ENST00000681788.1:ENST00000415380.6:ENST00000681117.1:ENST00000681499.1:ENST00000545305.1:ENST00000538291.5:ENST00000546215.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	20	235	2	2.14682	2.7950850000000003	3.44335	1.41032e-4	4.02128e-6	0.0102551	0.00144798
chr8	128017416	128017516	3862308	0	+	0.49	(0.476,0.515]	chr8	355521	3	INTRON	INTRON	PVT1	ENSG00000249859.13	ENST00000667305.1:ENST00000690350.1:ENST00000653522.1:ENST00000661830.1:ENST00000657289.1:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000657211.1:ENST00000653845.1:ENST00000651587.1:ENST00000692980.1:ENST00000654324.1:ENST00000657693.1:ENST00000666080.1:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000662410.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000657356.1:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000667714.1:ENST00000654105.1:ENST00000664995.1:ENST00000670714.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000668123.1:ENST00000666776.1:ENST00000659912.1:ENST00000670532.1:ENST00000523068.2:ENST00000671088.1:ENST00000663461.1:ENST00000513868.6:ENST00000692433.1:ENST00000523190.7:ENST00000685606.1:ENST00000690788.1:ENST00000685634.1:ENST00000653990.1:ENST00000655783.1:ENST00000656411.1:ENST00000664742.1:ENST00000655099.1:ENST00000662709.1:ENST00000512617.7:ENST00000660122.1:ENST00000666452.1:ENST00000659666.1:ENST00000659892.1:ENST00000521600.5:ENST00000522875.5:ENST00000653497.1:ENST00000668098.1:ENST00000659106.1:ENST00000666147.1:ENST00000658350.1:ENST00000656999.1:ENST00000664610.1:ENST00000671092.1:ENST00000653853.1	lncRNA	lncRNA	lncRNA	lncRNA	3	57	2	2.13304	2.7950749999999998	3.45711	0.024866	0.00140905	0.132101	0.0340865
chr7	23427981	23428080	3503241	0	-	0.454545	(0.44,0.476]	chr7	326906	88	INTRON	INTRON	IGF2BP3	ENSG00000136231.14	ENST00000258729.8:ENST00000421467.6:ENST00000468263.5:ENST00000479504.5:ENST00000466809.6:ENST00000491719.5:ENST00000465058.5:ENST00000469723.5:ENST00000476938.5:ENST00000468005.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	90	2	2.2193	2.79507	3.37084	0.00896114	1.26042e-4	0.0800073	0.00959902
chr11	3761910	3762008	4894808	0	-	0.357143	(0.35,0.378]	chr11	458884	9	INTRON	INTRON	NUP98	ENSG00000110713.17	ENST00000359171.8:ENST00000324932.12:ENST00000650171.1:ENST00000355260.7:ENST00000397004.8:ENST00000397007.8:ENST00000529379.1:ENST00000397013.2:ENST00000461047.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	45	2	2.53856	2.7949599999999997	3.05136	0.0326077	0.00578894	0.133687	0.0684334
chr3	12835241	12835335	1617445	0	-	0.478723	(0.476,0.515]	chr3	167008	9	UTR3	UTR3:EXON_MRNA	RPL32	ENSG00000144713.13	ENST00000429711.7:ENST00000396957.5	protein_coding	protein_coding	protein_coding	protein_coding	7	125	2	2.69827	2.7949599999999997	2.89165	0.00142068	2.54946e-4	0.034662	0.0148121
chr6	89657463	89657545	3160300	0	-	0.329268	(0.32,0.35]	chr6	294413	3	INTRON	INTRON	MDN1	ENSG00000112159.12	ENST00000369393.8:ENST00000629399.2	protein_coding	protein_coding	protein_coding	protein_coding	2	48	2	2.74415	2.79492	2.84569	0.0198267	0.0121137	0.109608	0.0962599
chr11	86009648	86009746	5014237	0	-	0.377551	(0.35,0.378]	chr11	472976	17	INTRON	INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000630913.2:ENST00000528398.5:ENST00000356360.9:ENST00000534412.5:ENST00000531771.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	109	2	1.54566	2.7948299999999997	4.044	0.0207593	1.3063e-4	0.122348	0.0103941
chr15	30654591	30654691	5992564	0	+	0.41	(0.408,0.44]	chr15	569759	52	INTRON	INTRON	ENSG00000284906:ENSG00000285035	ENSG00000284906.3:ENSG00000285035.2	ENST00000685924.1:ENST00000563110.6:ENST00000642399.2:ENST00000566548.5	protein_coding	protein_coding	protein_coding:transcribed_unprocessed_pseudogene	protein_coding:nonsense_mediated_decay:processed_transcript:transcribed_unprocessed_pseudogene	6	85	2	1.99397	2.794765	3.59556	0.00610802	8.33275e-4	0.0706941	0.0266389
chr15	32618322	32618421	5995501	0	+	0.353535	(0.35,0.378]	chr15	569956	16	INTRON	INTRON	ARHGAP11A	ENSG00000198826.11	ENST00000565905.5:ENST00000361627.8:ENST00000567348.5:ENST00000563864.5:ENST00000543522.5	protein_coding	protein_coding	protein_coding	protein_coding	2	45	2	2.72497	2.79474	2.86451	0.0198266	0.0109111	0.109608	0.0923273
chr5	43041351	43041451	2613897	0	-	0.37	(0.35,0.378]	chr5	248465	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	ENSG00000177738:ANXA2R	ENSG00000177738.5:ENSG00000177721.5	ENST00000503152.2:ENST00000665537.1:ENST00000314890.3	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	2	45	2	2.72497	2.79474	2.86451	0.0198266	0.0109111	0.109608	0.0923273
chr19	15289648	15289748	7146977	0	-	0.33	(0.32,0.35]	chr19	721965	93	INTRON	INTRON	BRD4	ENSG00000141867.19	ENST00000679869.1:ENST00000360016.9:ENST00000594841.5:ENST00000597315.5:ENST00000601941.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	164	2	2.63078	2.7946600000000004	2.95854	0.00218887	4.90902e-5	0.0417893	0.00573004
chr1	204550773	204550873	297776	0	+	0.48	(0.476,0.515]	chr1	34331	12	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	MDM4	ENSG00000198625.14	ENST00000367183.7:ENST00000391947.6:ENST00000454264.6:ENST00000612738.4:ENST00000614459.4:ENST00000616250.4:ENST00000367182.8:ENST00000463049.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	101	2	1.38299	2.794605	4.20622	0.0361854	4.01076e-5	0.152746	0.00539487
chr11	61366432	61366532	4796307	0	+	0.41	(0.408,0.44]	chr11	444229	3	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	TMEM138	ENSG00000149483.13	ENST00000542946.2:ENST00000689076.1:ENST00000451389.7:ENST00000693557.1:ENST00000692785.1:ENST00000685597.1:ENST00000692667.1:ENST00000540194.6:ENST00000534963.5:ENST00000688279.1:ENST00000688430.1:ENST00000278826.11:ENST00000507563.7:ENST00000691720.1:ENST00000689882.1:ENST00000543594.6:ENST00000692219.1:ENST00000686820.1:ENST00000423772.6:ENST00000545420.1:ENST00000381787.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	15	259	2	2.69541	2.794525	2.89364	7.06953e-5	1.44127e-5	0.00753095	0.00284474
chr4	82895378	82895477	2180154	0	-	0.50505	(0.476,0.515]	chr4	214415	25	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	SEC31A:THAP9-AS1	ENSG00000138674.17:ENSG00000251022.6	ENST00000355196.6:ENST00000503210.5:ENST00000507676.5:ENST00000506495.5:ENST00000507051.1:ENST00000504520.6:ENST00000504792.6:ENST00000512932.5:ENST00000511271.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	5	77	2	1.96437	2.794505	3.62464	0.0124351	5.079e-4	0.0920366	0.0202328
chr10	87774924	87775023	4662141	0	-	0.393939	(0.378,0.408]	chr10	429567	35	INTRON	INTRON	ATAD1	ENSG00000138138.14	ENST00000680024.1:ENST00000308448.11:ENST00000681308.1:ENST00000328142.3:ENST00000681602.1:ENST00000680388.1:ENST00000681629.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	43	2	2.53503	2.79448	3.05393	0.0319942	0.00551532	0.13174	0.0672816
chr3	33706221	33706321	1653891	0	-	0.39	(0.378,0.408]	chr3	169693	89	INTRON	INTRON	CLASP2	ENSG00000163539.18	ENST00000399362.8:ENST00000682230.1:ENST00000468888.6:ENST00000359576.9:ENST00000467956.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	43	2	2.53503	2.79448	3.05393	0.0319942	0.00551532	0.13174	0.0672816
chr3	142161623	142161723	1835494	0	-	0.38	(0.378,0.408]	chr3	184380	42	UTR3	UTR3:EXON_MRNA	GK5	ENSG00000175066.16	ENST00000392993.7	protein_coding	protein_coding	protein_coding	protein_coding	2	43	2	2.53503	2.79448	3.05393	0.0319942	0.00551532	0.13174	0.0672816
chr10	101815763	101815860	4680951	0	-	0.42268	(0.408,0.44]	chr10	432022	18	INTRON	INTRON	OGA	ENSG00000198408.14	ENST00000439817.5:ENST00000361464.8:ENST00000357797.9:ENST00000370094.7:ENST00000429860.1	protein_coding	protein_coding	protein_coding	protein_coding	5	80	2	2.53189	2.79447	3.05705	0.00658331	8.78846e-4	0.0701901	0.0269932
chr22	42613703	42613802	7595020	0	-	0.464646	(0.44,0.476]	chr22	777888	97	INTRON	INTRON	POLDIP3	ENSG00000100227.19	ENST00000348657.6:ENST00000252115.10:ENST00000445215.5:ENST00000451060.6:ENST00000339677.10:ENST00000454057.1:ENST00000463133.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	91	2	2.64557	2.79439	2.94321	0.00158432	0.00111162	0.0363089	0.0305384
chr11	119003608	119003707	4874030	0	+	0.434343	(0.408,0.44]	chr11	455385	14	INTRON	INTRON	CENATAC	ENSG00000186166.9	ENST00000334418.6:ENST00000524670.5:ENST00000526463.5:ENST00000532132.5:ENST00000580556.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	75	2	2.53313	2.7942299999999998	3.05533	0.00739595	6.50769e-4	0.074277	0.0231135
chr16	81594569	81594669	6406497	0	+	0.37	(0.35,0.378]	chr16	615031	987	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6	protein_coding	protein_coding	protein_coding	protein_coding	3	63	2	2.59656	2.7941450000000003	2.99173	0.00713365	0.00638551	0.0756118	0.0693551
chr3	196054058	196054144	1897248	0	-	0.546512	(0.515,0.57]	chr3	189896	1	INTRON	INTRON	TFRC	ENSG00000072274.13	ENST00000426789.5:ENST00000420415.5:ENST00000360110.9:ENST00000392396.7:ENST00000463047.1:ENST00000475593.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	11	161	2	2.5844	2.7941000000000003	3.0038	1.95765e-4	1.88504e-5	0.0128109	0.00332085
chr10	21597538	21597638	4405052	0	+	0.51	(0.476,0.515]	chr10	406466	17	INTRON	INTRON	MLLT10	ENSG00000078403.17	ENST00000651097.1:ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000650772.1:ENST00000651298.1:ENST00000495130.5:ENST00000377059.7:ENST00000652258.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	55	2	2.48551	2.7940750000000003	3.10264	0.00756632	0.00543163	0.0773151	0.0645052
chr3	172043020	172043119	1559577	0	+	0.50505	(0.476,0.515]	chr3	161523	20	INTRON	INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000421757.5:ENST00000469491.5:ENST00000336824.8:ENST00000423424.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	55	2	2.48551	2.7940750000000003	3.10264	0.00756632	0.00543163	0.0773151	0.0645052
chr7	101861744	101861844	3366806	0	+	0.51	(0.476,0.515]	chr7	315215	424	INTRON	INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000497815.5:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000607092.1:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000558469.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	102	2	2.28812	2.7940500000000004	3.29998	0.00344676	1.88247e-4	0.0517761	0.011951
chr6	2956042	2956135	3047565	0	-	0.462366	(0.44,0.476]	chr6	283568	5	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SERPINB6	ENSG00000124570.21	ENST00000643098.1:ENST00000380546.7:ENST00000380539.7:ENST00000380529.5:ENST00000380524.5:ENST00000643314.1:ENST00000646722.1:ENST00000649845.1:ENST00000644178.1:ENST00000612421.3:ENST00000647157.1:ENST00000616722.4:ENST00000642543.1:ENST00000644388.1:ENST00000380520.6:ENST00000645580.1:ENST00000644693.1:ENST00000644828.1:ENST00000646775.1:ENST00000645421.1:ENST00000643227.1:ENST00000646688.1:ENST00000644777.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	56	2	2.38519	2.794045	3.2029	0.012193	0.00308681	0.0910127	0.0510391
chr10	96575736	96575835	4674318	0	-	0.323232	(0.32,0.35]	chr10	430721	100	INTRON	INTRON	TM9SF3	ENSG00000077147.16	ENST00000371142.9:ENST00000649367.1:ENST00000443638.1:ENST00000464654.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	49	2	2.30673	2.7939	3.28107	0.0584434	0.00262488	0.167723	0.0470772
chr3	47845199	47845274	1420406	0	+	0.573333	(0.57,1]	chr3	149253	1	SS3_PROX	SS3_PROX:INTRON	DHX30	ENSG00000132153.15	ENST00000395745.6:ENST00000445061.6:ENST00000348968.8:ENST00000446256.6:ENST00000619982.4:ENST00000457607.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	36	2	2.32017	2.793885	3.2676	0.00488159	0.00176203	0.0640618	0.0376652
chr9	125237647	125237745	4352460	0	-	0.295918	(0.28,0.32]	chr9	399596	6	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HSPA5	ENSG00000044574.9	ENST00000324460.7:ENST00000680257.1:ENST00000679355.1:ENST00000681045.1:ENST00000681424.1:ENST00000681675.1:ENST00000681544.1:ENST00000680272.1:ENST00000679475.1:ENST00000680494.1:ENST00000681774.1:ENST00000680640.1:ENST00000680032.1:ENST00000681540.1:ENST00000680234.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	16	352	2	2.56401	2.7938150000000004	3.02362	4.43499e-4	5.93672e-6	0.0194381	0.00170885
chr7	148864803	148864903	3670568	0	-	0.53	(0.515,0.57]	chr7	340628	171	INTRON	INTRON	EZH2	ENSG00000106462.12	ENST00000683292.1:ENST00000320356.7:ENST00000492143.5:ENST00000478654.5:ENST00000350995.6:ENST00000460911.5:ENST00000683744.1:ENST00000682317.1:ENST00000682263.1:ENST00000684300.1:ENST00000476773.5:ENST00000483967.5:ENST00000498186.5:ENST00000483012.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	162	2	2.60997	2.79369	2.97741	3.036e-4	1.0401e-5	0.0161199	0.00235262
chr5	66154585	66154683	2372592	0	+	0.377551	(0.35,0.378]	chr5	228655	6	INTRON	INTRON	SREK1	ENSG00000153914.16	ENST00000521691.5:ENST00000612404.4:ENST00000334121.11:ENST00000520953.5:ENST00000522912.5:ENST00000524111.5:ENST00000380918.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	171	2	2.4136	2.793635	3.17367	0.00136305	2.58907e-5	0.0336321	0.00400663
chr1	41183628	41183728	430240	0	-	0.3	(0.28,0.32]	chr1	52248	208	INTRON	INTRON	SCMH1	ENSG00000010803.17	ENST00000695335.1:ENST00000372596.5:ENST00000372597.5:ENST00000337495.9:ENST00000695336.1	protein_coding	protein_coding	protein_coding	protein_coding	7	147	2	2.17469	2.7936199999999998	3.41255	0.00493565	1.55656e-4	0.0612225	0.0106835
chr22	19073212	19073311	7551521	0	-	0.40404	(0.378,0.408]	chr22	771897	46	INTRON	INTRON	DGCR2	ENSG00000070413.20	ENST00000537045.5:ENST00000545799.5:ENST00000263196.12:ENST00000389262.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	61	2	2.04292	2.7934900000000003	3.54406	0.0326035	0.00110718	0.145164	0.0306086
chr5	31505334	31505433	2596735	0	-	0.424242	(0.408,0.44]	chr5	246668	3	INTRON	INTRON	DROSHA	ENSG00000113360.17	ENST00000344624.8:ENST00000511367.6:ENST00000513349.5:ENST00000512076.1	protein_coding	protein_coding	protein_coding	protein_coding	2	42	2	2.43988	2.79347	3.14706	0.0398236	0.00382411	0.143072	0.0562562
chr5	32427081	32427181	2599152	0	-	0.43	(0.408,0.44]	chr5	246966	66	INTRON	INTRON	ZFR	ENSG00000056097.16	ENST00000265069.13:ENST00000505366.1:ENST00000505204.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	42	2	2.43988	2.79347	3.14706	0.0398236	0.00382411	0.143072	0.0562562
chr1	1848178	1848278	362412	0	-	0.51	(0.476,0.515]	chr1	42311	81	INTRON	INTRON	GNB1	ENSG00000078369.18	ENST00000610897.4:ENST00000615252.4:ENST00000378609.9:ENST00000439272.6:ENST00000434686.6:ENST00000472614.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	75	2	2.68023	2.793455	2.90668	0.00353671	0.00164243	0.0546236	0.0369207
chr6	147218759	147218859	2988851	0	+	0.41	(0.408,0.44]	chr6	280001	123	INTRON	INTRON	STXBP5	ENSG00000164506.15	ENST00000321680.11:ENST00000367481.7:ENST00000546097.5:ENST00000367480.7	protein_coding	protein_coding	protein_coding	protein_coding	6	108	2	2.62147	2.7933950000000003	2.96532	0.00180223	2.36857e-4	0.0382461	0.0136195
chr2	131211781	131211879	865476	0	+	0.510204	(0.476,0.515]	chr2	97182	2	INTRON	INTRON	PLEKHB2:POTEE	ENSG00000115762.17:ENSG00000188219.16	ENST00000404460.5:ENST00000683005.1	protein_coding	protein_coding	protein_coding	protein_coding	6	107	2	2.53419	2.793265	3.05234	0.00251905	1.48283e-4	0.0446195	0.0105822
chr7	100341136	100341232	3364388	0	+	0.5625	(0.515,0.57]	chr7	314640	3	EXON_LNCRNA	EXON_LNCRNA:INTRON	STAG3L5P:STAG3L5P-PVRIG2P-PILRB	ENSG00000242294.6:ENSG00000272752.6	ENST00000473757.5:ENST00000470714.5:ENST00000310771.8:ENST00000483329.6:ENST00000422479.5:ENST00000444874.5:ENST00000488972.6:ENST00000493499.1	lncRNA	retained_intron	lncRNA:transcribed_unprocessed_pseudogene	retained_intron:lncRNA:processed_transcript	4	64	2	2.53845	2.793215	3.04798	0.00632226	5.9198e-4	0.0687526	0.0221485
chr7	156718722	156718821	3686247	0	-	0.343434	(0.32,0.35]	chr7	341983	302	INTRON	INTRON	LMBR1	ENSG00000105983.23	ENST00000353442.10:ENST00000448926.5:ENST00000415428.5:ENST00000454132.5:ENST00000434503.5:ENST00000461603.5:ENST00000486837.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	49	2	2.64129	2.793195	2.9451	0.0222819	0.011051	0.124303	0.0873897
chr8	111039414	111039511	4027596	0	-	0.536082	(0.515,0.57]	chr8	367869	22	INTRON	INTRON	LINC01608	ENSG00000253877.6	ENST00000669893.1	lncRNA	lncRNA	lncRNA	lncRNA	3	48	2	2.27238	2.79313	3.31388	0.0161808	0.00174704	0.101453	0.0386026
chr6	166949125	166949223	3264245	0	-	0.387755	(0.378,0.408]	chr6	303038	1	INTRON	INTRON	ENSG00000249141:RNASET2	ENSG00000249141.1:ENSG00000026297.17	ENST00000507747.1:ENST00000508775.6:ENST00000683770.1:ENST00000611959.2:ENST00000620173.5:ENST00000682774.1:ENST00000684236.1:ENST00000683968.1:ENST00000366855.10:ENST00000421787.5:ENST00000476238.6:ENST00000028008.9:ENST00000478180.6:ENST00000499370.6:ENST00000358165.7:ENST00000496851.6:ENST00000683158.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	155	2	2.40853	2.7929899999999996	3.17745	5.14801e-4	1.31721e-4	0.0203753	0.0104376
chr20	49703679	49703779	7353526	0	-	0.49	(0.476,0.515]	chr20	749846	466	INTRON	INTRON	B4GALT5	ENSG00000158470.5	ENST00000371711.4	protein_coding	protein_coding	protein_coding	protein_coding	6	102	2	2.31113	2.79297	3.27481	0.00258657	2.99781e-4	0.0469354	0.0160591
chr1	182844733	182844833	273031	0	+	0.58	(0.57,1]	chr1	31871	9	INTRON	INTRON	DHX9	ENSG00000135829.17	ENST00000367549.4:ENST00000483416.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	64	2	2.44356	2.792945	3.14233	0.00109465	4.99296e-5	0.0304174	0.00578948
chr6	167854172	167854272	3034610	0	+	0.39	(0.378,0.408]	chr6	282711	259	INTRON	INTRON	AFDN	ENSG00000130396.21	ENST00000683244.1:ENST00000400825.8:ENST00000351017.9:ENST00000344191.8:ENST00000392112.5:ENST00000392108.7:ENST00000400824.8:ENST00000400822.7:ENST00000447894.6:ENST00000366809.6:ENST00000366806.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	58	2	2.11194	2.7928550000000003	3.47377	0.0292534	0.00103087	0.128055	0.0294094
chr4	82354524	82354616	2177332	0	-	0.304348	(0.28,0.32]	chr4	214119	5	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HNRNPD	ENSG00000138668.19	ENST00000313899.12:ENST00000353341.8:ENST00000514325.1:ENST00000352301.8:ENST00000514671.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	265	2	2.60353	2.79282	2.98211	8.05663e-4	1.73841e-5	0.0263213	0.00317111
chr9	37236407	37236507	4118821	0	+	0.57	(0.515,0.57]	chr9	375389	495	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000461038.5:ENST00000488607.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	108	2	2.21288	2.79282	3.37276	0.00148015	1.02064e-4	0.0349359	0.00853098
chr10	21555750	21555848	4404626	0	+	0.5	(0.476,0.515]	chr10	406433	35	INTRON	INTRON	MLLT10	ENSG00000078403.17	ENST00000651097.1:ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000377100.8:ENST00000377091.7:ENST00000650772.1:ENST00000651298.1:ENST00000652497.1:ENST00000495130.5:ENST00000377059.7:ENST00000621220.4:ENST00000476557.5:ENST00000462999.5:ENST00000430455.2:ENST00000479634.1:ENST00000480415.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	66	2	2.25138	2.79277	3.33416	0.00692374	0.00230489	0.0753208	0.0428247
chr3	119451517	119451617	1791862	0	-	0.52	(0.515,0.57]	chr3	179940	2	SS3_PROX	SS3_PROX:INTRON	TMEM39A	ENSG00000176142.13	ENST00000319172.10:ENST00000438581.6:ENST00000491685.5:ENST00000486159.5:ENST00000486235.5:ENST00000468676.5:ENST00000490099.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	58	2	1.8661	2.79276	3.71942	0.0274846	2.61221e-4	0.123904	0.014326
chr12	132801466	132801566	5449936	0	-	0.57	(0.515,0.57]	chr12	522064	3	SS5_PROX	SS5_PROX:INTRON	GOLGA3	ENSG00000090615.16	ENST00000204726.9:ENST00000450791.8:ENST00000693666.1:ENST00000688114.1:ENST00000687190.1:ENST00000690511.1:ENST00000685283.1:ENST00000691696.1:ENST00000691636.1:ENST00000690897.1:ENST00000690465.1:ENST00000456883.7:ENST00000692253.1:ENST00000687502.1:ENST00000688772.1:ENST00000687479.1:ENST00000690709.1:ENST00000545875.4:ENST00000688251.1:ENST00000690573.1:ENST00000685195.1:ENST00000686425.1:ENST00000693437.1:ENST00000692831.1:ENST00000688068.1:ENST00000692951.1:ENST00000689441.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	67	2	2.21273	2.792745	3.37276	0.0196151	1.02064e-4	0.109486	0.00853098
chr2	32167000	32167100	729788	0	+	0.38	(0.378,0.408]	chr2	84142	7	INTRON	INTRON	SLC30A6	ENSG00000152683.14	ENST00000357055.7:ENST00000435660.5:ENST00000282587.9:ENST00000449777.5:ENST00000454324.5:ENST00000379343.6:ENST00000440718.5:ENST00000406369.2:ENST00000457724.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	58	2	2.30628	2.792675	3.27907	0.0163339	0.0023379	0.101571	0.0442989
chr6	34308378	34308478	3083930	0	-	0.49	(0.476,0.515]	chr6	288627	123	INTRON	INTRON	NUDT3:RPS10-NUDT3	ENSG00000272325.2:ENSG00000270800.3	ENST00000607016.2:ENST00000639725.1:ENST00000639877.1:ENST00000605528.2	protein_coding	protein_coding	protein_coding	protein_coding	5	89	2	2.47496	2.792585	3.11021	0.00323541	5.02606e-4	0.0507251	0.020217099999999998
chr19	48247075	48247172	7198513	0	-	0.525773	(0.515,0.57]	chr19	729695	3	INTRON	INTRON	CARD8	ENSG00000105483.18	ENST00000517510.5:ENST00000651546.1:ENST00000518622.5:ENST00000447740.6:ENST00000518979.5:ENST00000519940.6:ENST00000520753.5:ENST00000520153.5:ENST00000522773.5:ENST00000522051.5:ENST00000519646.5:ENST00000520015.5:ENST00000521613.5:ENST00000519302.6:ENST00000522068.5:ENST00000518596.5:ENST00000517778.5:ENST00000521092.5:ENST00000522889.5:ENST00000522431.5:ENST00000519332.5:ENST00000520007.5:ENST00000521437.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	58	2	2.15866	2.79255	3.42644	0.0100547	0.00106731	0.0848452	0.0300133
chr10	21569680	21569780	4404769	0	+	0.46	(0.44,0.476]	chr10	406446	115	INTRON	INTRON	MLLT10	ENSG00000078403.17	ENST00000651097.1:ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000650772.1:ENST00000651298.1:ENST00000495130.5:ENST00000377059.7:ENST00000476557.5:ENST00000462999.5:ENST00000430455.2:ENST00000479634.1:ENST00000480415.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	89	2	2.67227	2.792395	2.91252	0.00164027	0.0010793	0.0369207	0.0300133
chr1	205203282	205203381	623063	0	-	0.545455	(0.515,0.57]	chr1	74098	151	INTRON	INTRON	DSTYK	ENSG00000133059.17	ENST00000367162.8:ENST00000367161.7	protein_coding	protein_coding	protein_coding	protein_coding	3	48	2	2.68132	2.7922149999999997	2.90311	0.0094233	0.00324198	0.0817766	0.0524329
chr5	111127958	111128056	2451509	0	+	0.397959	(0.378,0.408]	chr5	234896	12	UTR3	UTR3:EXON_MRNA	WDR36	ENSG00000134987.13	ENST00000513710.4	protein_coding	protein_coding	protein_coding	protein_coding	3	60	2	2.11103	2.792125	3.47322	0.0266911	0.00147803	0.134419	0.0348908
chr1	246007760	246007860	675708	0	-	0.49	(0.476,0.515]	chr1	79713	193	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000391836.3:ENST00000464398.1:ENST00000453676.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	91	2	2.3346	2.7921	3.2496	0.00494807	3.39435e-4	0.0646039	0.0170719
chr5	62358799	62358896	2362571	0	+	0.505155	(0.476,0.515]	chr5	227773	1	INTRON	INTRON	KIF2A	ENSG00000068796.19	ENST00000401507.7:ENST00000407818.8:ENST00000674632.1:ENST00000674916.1:ENST00000676413.1:ENST00000676122.1:ENST00000674751.1:ENST00000514082.6:ENST00000381103.7:ENST00000676271.1:ENST00000674733.1:ENST00000506857.5:ENST00000674752.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	41	2	1.33919	2.7921	4.24501	0.06316	0.0247713	0.197199	0.12011
chr3	183984039	183984135	1882278	0	-	0.385417	(0.378,0.408]	chr3	188191	4	UTR3	UTR3:EXON_MRNA:INTRON	ABCC5	ENSG00000114770.17	ENST00000334444.11:ENST00000265586.10:ENST00000437205.5:ENST00000382494.6:ENST00000392579.6:ENST00000443376.5:ENST00000427120.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	191	2	2.70896	2.7920749999999996	2.87519	2.39791e-4	5.27684e-5	0.0142214	0.00592337
chr7	105540215	105540314	3375766	0	+	0.40404	(0.378,0.408]	chr7	316053	31	INTRON	INTRON	RINT1	ENSG00000135249.8	ENST00000467392.5:ENST00000482041.5:ENST00000493041.5:ENST00000257700.7:ENST00000497979.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	79	2	2.30628	2.79206	3.27784	0.0163339	2.17147e-4	0.101571	0.0129235
chr8	25455016	25455115	3926317	0	-	0.464646	(0.44,0.476]	chr8	359463	31	INTRON	INTRON	KCTD9	ENSG00000104756.16	ENST00000221200.9:ENST00000519665.5:ENST00000523140.5:ENST00000522493.5:ENST00000518067.5:ENST00000518997.5:ENST00000523294.5:ENST00000521458.5:ENST00000524217.1:ENST00000517914.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	56	2	2.78129	2.79202	2.80275	0.0146513	0.00229634	0.0982604	0.0439319
chr21	34888492	34888591	7447271	0	-	0.474747	(0.44,0.476]	chr21	759861	15	UTR5	UTR5:EXON_MRNA:INTRON	RUNX1	ENSG00000159216.19	ENST00000300305.7:ENST00000675419.1:ENST00000437180.5:ENST00000344691.8:ENST00000482318.5:ENST00000358356.9:ENST00000399237.6:ENST00000455571.5:ENST00000475045.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	13	217	2	2.53363	2.791935	3.05024	9.8404e-5	3.61883e-5	0.00834688	0.00509078
chr15	66391007	66391106	6049276	0	+	0.474747	(0.44,0.476]	chr15	576031	32	INTRON	INTRON	MAP2K1	ENSG00000169032.11	ENST00000425818.2:ENST00000689951.1:ENST00000685763.1:ENST00000307102.10:ENST00000691576.1:ENST00000686347.1:ENST00000691077.1:ENST00000687191.1:ENST00000691937.1:ENST00000692487.1:ENST00000685172.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	42	2	2.66433	2.7919150000000004	2.9195	0.0194358	0.0102021	0.119831	0.0850389
chr16	68031154	68031253	6369650	0	+	0.474747	(0.44,0.476]	chr16	612075	37	INTRON	INTRON	DUS2	ENSG00000167264.18	ENST00000571081.6:ENST00000570709.6:ENST00000575677.5:ENST00000576994.5:ENST00000566306.5:ENST00000358896.10:ENST00000564975.5:ENST00000568099.6:ENST00000565263.6:ENST00000567100.5:ENST00000432752.5:ENST00000569289.5:ENST00000564781.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	42	2	2.66433	2.7919150000000004	2.9195	0.0194358	0.0102021	0.119831	0.0850389
chr2	74075330	74075429	812695	0	+	0.474747	(0.44,0.476]	chr2	90864	13	INTRON	INTRON	TET3	ENSG00000187605.16	ENST00000409262.8:ENST00000305799.8	protein_coding	protein_coding	protein_coding	protein_coding	2	42	2	2.66433	2.7919150000000004	2.9195	0.0194358	0.0102021	0.119831	0.0850389
chr17	13006942	13007041	6726374	0	-	0.545455	(0.515,0.57]	chr17	660086	5	INTRON	INTRON	ELAC2	ENSG00000006744.19	ENST00000338034.9:ENST00000484122.5:ENST00000395962.6:ENST00000426905.7:ENST00000584650.5:ENST00000446899.5:ENST00000609345.1:ENST00000609101.5:ENST00000580504.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	48	2	2.32836	2.791915	3.25547	0.0126662	0.00261721	0.0982897	0.0455413
chr2	223967228	223967325	1023649	0	+	0.505155	(0.476,0.515]	chr2	109410	3	UTR3	UTR3:EXON_MRNA	MRPL44	ENSG00000135900.4	ENST00000258383.4	protein_coding	protein_coding	protein_coding	protein_coding	6	104	2	2.50778	2.7918950000000002	3.07601	0.00128608	5.95211e-4	0.0328018	0.0221865
chr6	34327468	34327568	3084121	0	-	0.43	(0.408,0.44]	chr6	288627	314	INTRON	INTRON	NUDT3:RPS10-NUDT3	ENSG00000272325.2:ENSG00000270800.3	ENST00000607016.2:ENST00000639725.1:ENST00000639877.1:ENST00000605528.2	protein_coding	protein_coding	protein_coding	protein_coding	4	68	2	2.1226	2.79182	3.46104	0.012812	0.00105552	0.0926667	0.0299229
chr16	21628603	21628703	6319237	0	+	0.53	(0.515,0.57]	chr16	604937	31	INTRON	INTRON	METTL9	ENSG00000197006.15	ENST00000567404.5:ENST00000396014.8:ENST00000358154.8:ENST00000568826.1	protein_coding	protein_coding	protein_coding	protein_coding	2	36	2	2.52504	2.791715	3.05839	0.029342	0.00485936	0.128055	0.0640618
chr20	31747234	31747334	7253740	0	+	0.52	(0.515,0.57]	chr20	736731	42	INTRON	INTRON	TPX2	ENSG00000088325.16	ENST00000340513.4:ENST00000300403.11	protein_coding	protein_coding	protein_coding	protein_coding	2	36	2	2.52504	2.791715	3.05839	0.029342	0.00485936	0.128055	0.0640618
chr17	77093636	77093733	6678149	0	+	0.57732000000000006	(0.57,1]	chr17	652310	4	EXON_LNCRNA	EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SNHG20:SEC14L1	ENSG00000234912.12:ENSG00000129657.16	ENST00000564414.5:ENST00000568056.5:ENST00000568363.5:ENST00000647734.1:ENST00000434411.6:ENST00000649047.1:ENST00000649712.1:ENST00000650557.1:ENST00000647904.1:ENST00000648984.1:ENST00000392476.6:ENST00000589827.5:ENST00000561721.6:ENST00000561633.5:ENST00000564509.5:ENST00000565256.1:ENST00000566583.5:ENST00000648740.1:ENST00000569632.1:ENST00000430767.8	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	2	23	2	2.66438	2.7916350000000003	2.91889	0.0171563	0.00719009	0.104099	0.0756118
chr7	76550733	76550826	3340374	0	+	0.612903	(0.57,1]	chr7	311164	5	INTRON	INTRON	ENSG00000205485	ENSG00000205485.13	ENST00000418663.5:ENST00000450661.1:ENST00000423084.1:ENST00000429707.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	2	23	2	2.66438	2.7916350000000003	2.91889	0.0171563	0.00719009	0.104099	0.0756118
chr1	32685018	32685117	66187	0	+	0.525253	(0.515,0.57]	chr1	8474	46	UTR3	UTR3:EXON_MRNA	RBBP4	ENSG00000162521.19	ENST00000373493.10	protein_coding	protein_coding	protein_coding	protein_coding	5	66	2	1.86362	2.7915200000000002	3.71942	0.0164561	2.61221e-4	0.102235	0.014326
chr6	136287236	136287335	3231102	0	-	0.484848	(0.476,0.515]	chr6	300408	42	INTRON	INTRON	BCLAF1	ENSG00000029363.17	ENST00000640069.1:ENST00000531224.6:ENST00000353331.8:ENST00000527536.5:ENST00000527613.5:ENST00000530767.5:ENST00000527759.5:ENST00000534269.5:ENST00000532384.5:ENST00000530429.5:ENST00000628517.2:ENST00000529826.5:ENST00000528229.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	23	383	2	2.58504	2.791505	2.99797	3.48437e-5	1.89999e-6	0.00499276	8.38285e-4
chr10	74017278	74017378	4454693	0	+	0.59	(0.57,1]	chr10	411390	4	SS5_PROX	SS5_PROX:INTRON	VCL	ENSG00000035403.18	ENST00000623461.3:ENST00000372755.7:ENST00000624354.3:ENST00000211998.10:ENST00000478896.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	23	2	2.78409	2.79149	2.79889	0.0116033	0.0110274	0.0927187	0.0889104
chr11	129949887	129949986	5052438	0	-	0.59596	(0.57,1]	chr11	476907	14	INTRON	INTRON	PRDM10	ENSG00000170325.16	ENST00000358825.9:ENST00000360871.8:ENST00000528746.5:ENST00000527581.5:ENST00000531431.1	protein_coding	protein_coding	protein_coding	protein_coding	2	23	2	2.78409	2.79149	2.79889	0.0116033	0.0110274	0.0927187	0.0889104
chr19	24058624	24058723	7044113	0	+	0.585859	(0.57,1]	chr19	702364	8	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	ENSG00000268362:ZNF254	ENSG00000268362.6:ENSG00000213096.11	ENST00000664647.1:ENST00000613065.4:ENST00000666101.1:ENST00000653003.1:ENST00000666488.1:ENST00000594934.6:ENST00000654353.1:ENST00000662140.1:ENST00000668060.1:ENST00000660137.1:ENST00000652968.1:ENST00000670905.1:ENST00000658858.1:ENST00000654594.1:ENST00000654372.1:ENST00000652837.1:ENST00000654611.1:ENST00000597683.1:ENST00000671141.1:ENST00000653308.1:ENST00000661386.1:ENST00000668656.1:ENST00000663903.1:ENST00000668169.1:ENST00000663458.1:ENST00000662903.1:ENST00000665638.1:ENST00000670058.1:ENST00000668701.1:ENST00000655664.1:ENST00000666861.1:ENST00000664627.1:ENST00000661650.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	2	23	2	2.78409	2.79149	2.79889	0.0116033	0.0110274	0.0927187	0.0889104
chr21	37377314	37377414	7406327	0	+	0.58	(0.57,1]	chr21	754850	18	INTRON	INTRON	DYRK1A	ENSG00000157540.22	ENST00000646523.1:ENST00000647425.1:ENST00000647188.2:ENST00000647504.1:ENST00000644942.1:ENST00000338785.8:ENST00000643624.1:ENST00000643551.1:ENST00000426672.6:ENST00000398960.7	protein_coding	protein_coding	protein_coding	protein_coding	2	23	2	2.78409	2.79149	2.79889	0.0116033	0.0110274	0.0927187	0.0889104
chr10	22670360	22670459	4580060	0	-	0.40404	(0.378,0.408]	chr10	422040	81	INTRON	INTRON	PIP4K2A	ENSG00000150867.14	ENST00000376573.9:ENST00000545335.5:ENST00000605011.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	103	2	1.64762	2.791425	3.93523	0.0136375	1.93873e-4	0.101785	0.0127226
chr16	50247301	50247401	6348398	0	+	0.54	(0.515,0.57]	chr16	609379	7	INTRON	INTRON	ADCY7	ENSG00000121281.13	ENST00000564965.5:ENST00000564044.5	protein_coding	protein_coding	protein_coding	protein_coding	2	36	2	2.74772	2.791365	2.83501	0.0142192	0.0117686	0.103638	0.0894475
chr5	87338591	87338690	2411504	0	+	0.525253	(0.515,0.57]	chr5	232407	1	INTRON	INTRON	RASA1	ENSG00000145715.15	ENST00000274376.11:ENST00000515800.6:ENST00000456692.6:ENST00000506290.1:ENST00000512763.5:ENST00000509953.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	36	2	2.74772	2.791365	2.83501	0.0142192	0.0117686	0.103638	0.0894475
chrX	131745631	131745731	7892133	0	-	0.55	(0.515,0.57]	chrX	803402	20	INTRON	INTRON	FIRRE	ENSG00000213468.7	ENST00000649541.1:ENST00000662867.1:ENST00000663405.1:ENST00000665076.1:ENST00000637577.2:ENST00000654978.1:ENST00000647966.1:ENST00000649391.1:ENST00000648028.2:ENST00000427391.2	lncRNA	lncRNA	lncRNA	lncRNA	2	36	2	2.74772	2.791365	2.83501	0.0142192	0.0117686	0.103638	0.0894475
chr17	27311912	27312010	6580723	0	+	0.459184	(0.44,0.476]	chr17	639645	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	WSB1	ENSG00000109046.15	ENST00000467843.6:ENST00000262394.7:ENST00000348811.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	127	2	2.57846	2.791325	3.00419	0.00110055	1.86806e-4	0.0304914	0.0119273
chr11	11892905	11893005	4736070	0	+	0.41	(0.408,0.44]	chr11	438627	4	INTRON	INTRON	USP47	ENSG00000170242.19	ENST00000339865.9:ENST00000527733.7:ENST00000399455.2	protein_coding	protein_coding	protein_coding	protein_coding	3	56	2	2.21857	2.791175	3.36378	0.0209591	0.0016048	0.112046	0.0367961
chr16	23912642	23912742	6324527	0	+	0.52	(0.515,0.57]	chr16	605701	189	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000498739.1	protein_coding	protein_coding	protein_coding	protein_coding	7	105	2	2.70352	2.791155	2.87879	9.70997e-4	1.06927e-4	0.0283239	0.00876441
chr6	149768603	149768701	2996225	0	+	0.418367	(0.408,0.44]	chr6	280349	25	INTRON	INTRON	PCMT1	ENSG00000120265.19	ENST00000367384.7:ENST00000367378.6:ENST00000484601.6:ENST00000367380.9:ENST00000544496.5:ENST00000649295.1:ENST00000494411.6:ENST00000460828.6:ENST00000464889.7:ENST00000486585.2:ENST00000495487.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	127	2	2.54349	2.791155	3.03882	9.66897e-4	2.29121e-4	0.0282401	0.0133403
chr15	64519653	64519753	6044680	0	+	0.3	(0.28,0.32]	chr15	575696	167	INTRON	INTRON	ZNF609	ENSG00000180357.10	ENST00000326648.5:ENST00000558680.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	52	2	2.45545	2.791125	3.1268	0.0438092	0.00508956	0.14901	0.0646039
chr2	182991566	182991665	1285552	0	-	0.282828	(0.28,0.32]	chr2	135394	20	INTRON	INTRON	NCKAP1	ENSG00000061676.15	ENST00000361354.9:ENST00000360982.2	protein_coding	protein_coding	protein_coding	protein_coding	2	52	2	2.45545	2.791125	3.1268	0.0438092	0.00508956	0.14901	0.0646039
chr9	124943006	124943106	4349954	0	-	0.31	(0.28,0.32]	chr9	399421	5	UTR3	UTR3:EXON_MRNA:INTRON	GOLGA1:SCAI	ENSG00000136935.14:ENSG00000173611.18	ENST00000421514.1:ENST00000336505.11	protein_coding	protein_coding	protein_coding	protein_coding	2	52	2	2.45545	2.791125	3.1268	0.0438092	0.00508956	0.14901	0.0646039
chr7	65754661	65754761	3322769	0	+	0.45	(0.44,0.476]	chr7	308956	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	CCT6P1	ENSG00000228409.7	ENST00000686363.1:ENST00000688735.1:ENST00000689814.1:ENST00000690196.1:ENST00000690636.1:ENST00000687809.1:ENST00000688944.1:ENST00000691983.1:ENST00000688184.1:ENST00000688478.1:ENST00000443108.7:ENST00000686689.1:ENST00000689785.1:ENST00000685316.1:ENST00000442266.3:ENST00000685398.1:ENST00000434500.6	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	5	79	2	2.12263	2.7911	3.45957	0.00692375	0.00106385	0.0718189	0.0300133
chr11	62565214	62565314	4959507	0	-	0.48	(0.476,0.515]	chr11	466237	44	INTRON	INTRON	EEF1G	ENSG00000254772.10	ENST00000329251.5:ENST00000525340.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	43	2	2.47949	2.791065	3.10264	0.0326974	0.00543163	0.145164	0.0645052
chr8	23569751	23569850	3715511	0	+	0.585859	(0.57,1]	chr8	345238	9	INTRON	INTRON	SLC25A37	ENSG00000147454.14	ENST00000519973.6:ENST00000290075.10:ENST00000417331.6:ENST00000518881.5:ENST00000523930.1:ENST00000523883.5:ENST00000522164.5:ENST00000521637.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	48	400	2	2.70262	2.791035	2.87945	8.43271e-8	4.68039e-8	1.25006e-4	8.59876e-5
chr22	20491387	20491472	7557483	0	-	0.576471	(0.57,1]	chr22	772812	4	UTR5	UTR5:EXON_MRNA:SS3_PROX:SS5_PROX:INTRON	KLHL22	ENSG00000099910.17	ENST00000328879.9:ENST00000479601.5:ENST00000451553.1:ENST00000444967.5:ENST00000458248.5:ENST00000443285.5:ENST00000494929.5:ENST00000431430.1:ENST00000470335.1:ENST00000490556.1:ENST00000423364.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	31	2	2.66305	2.79097	2.91889	0.00719009	0.00327879	0.0756118	0.0509077
chr10	11608655	11608754	4556040	0	-	0.393939	(0.378,0.408]	chr10	420468	106	INTRON	INTRON	USP6NL	ENSG00000148429.15	ENST00000609104.6:ENST00000606752.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	32	2	1.59317	2.79092	3.98867	0.0603812	0.0507	0.19151	0.156383
chr3	47906759	47906858	1685663	0	-	0.252525	[0,0.28]	chr3	172207	34	INTRON	INTRON	MAP4	ENSG00000047849.22	ENST00000429422.5:ENST00000683076.1:ENST00000395734.7:ENST00000426837.6:ENST00000360240.10:ENST00000383736.3:ENST00000482752.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	80	2	2.1357	2.790905	3.44611	0.0338175	0.00185186	0.134476	0.039946
chr6	97270379	97270476	3164645	0	-	0.257732	[0,0.28]	chr6	295140	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	MMS22L	ENSG00000146263.12	ENST00000683635.1:ENST00000275053.8:ENST00000369251.6:ENST00000509383.5:ENST00000510018.5:ENST00000508976.5:ENST00000511335.5:ENST00000506256.5:ENST00000484170.2:ENST00000508820.1:ENST00000496119.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	59	2	2.44242	2.79084	3.13926	0.0491024	0.00563224	0.155269	0.0678837
chr5	54031108	54031208	2618115	0	-	0.31	(0.28,0.32]	chr5	248835	1191	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	96	2	2.15001	2.790795	3.43158	0.00621783	0.00244075	0.0717536	0.0445752
chr6	43568210	43568310	3097257	0	-	0.61	(0.57,1]	chr6	290104	1	SS5_PROX	SS5_PROX:INTRON	XPO5	ENSG00000124571.18	ENST00000265351.12	protein_coding	protein_coding	protein_coding	protein_coding	7	50	2	2.01786	2.790775	3.56369	0.00313784	4.26536e-4	0.0514466	0.0189958
chr12	71760258	71760357	5168777	0	+	0.40404	(0.378,0.408]	chr12	489646	46	INTRON	INTRON	RAB21	ENSG00000080371.6	ENST00000261263.5	protein_coding	protein_coding	protein_coding	protein_coding	4	83	2	2.05897	2.790765	3.52256	0.0339294	5.59174e-5	0.134508	0.00612101
chr7	75510430	75510530	3558964	0	-	0.29	(0.28,0.32]	chr7	331569	1	SS5_PROX	SS5_PROX:INTRON	PMS2P3	ENSG00000127957.19	ENST00000693762.1:ENST00000394921.8:ENST00000430602.5:ENST00000418756.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	5	114	2	2.38482	2.7906899999999997	3.19656	0.00641776	4.54565e-4	0.0695827	0.0192381
chrX	73852023	73852123	7838044	0	-	0.46	(0.44,0.476]	chrX	799611	147	EXON_LNCRNA	EXON_LNCRNA	XIST	ENSG00000229807.13	ENST00000429829.6	lncRNA	lncRNA	lncRNA	lncRNA	40	659	2	2.70568	2.79066	2.87564	1.06837e-5	3.50785e-7	0.00256986	3.00241e-4
chr3	183735619	183735719	1580673	0	+	0.35	(0.32,0.35]	chr3	163056	64	INTRON	INTRON	YEATS2	ENSG00000163872.16	ENST00000305135.10	protein_coding	protein_coding	protein_coding	protein_coding	18	353	2	2.11956	2.790655	3.46175	0.00123666	4.50241e-7	0.0322669	3.53987e-4
chr17	75230374	75230467	6674527	0	+	0.580645	(0.57,1]	chr17	651408	9	INTRON	INTRON	NUP85	ENSG00000125450.11	ENST00000245544.9:ENST00000579324.5:ENST00000581104.5:ENST00000579298.5:ENST00000578830.5:ENST00000579557.5:ENST00000577645.5:ENST00000583070.5:ENST00000580879.5:ENST00000540768.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	85	2	2.48137	2.7906500000000003	3.09993	1.17659e-4	6.63721e-5	0.00982679	0.00675077
chr16	4411370	4411467	6437320	0	-	0.474227	(0.44,0.476]	chr16	619818	28	INTRON	INTRON	CORO7	ENSG00000262246.6	ENST00000251166.9:ENST00000571227.5:ENST00000537233.6:ENST00000574025.5:ENST00000574311.5:ENST00000576437.5:ENST00000571756.5:ENST00000572549.5:ENST00000572044.1:ENST00000571059.5:ENST00000571052.5:ENST00000575038.5:ENST00000570645.5:ENST00000570928.5:ENST00000575850.5:ENST00000572153.5:ENST00000572898.1:ENST00000576051.5:ENST00000576457.5:ENST00000577144.5:ENST00000572026.5:ENST00000572518.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	67	2	1.90381	2.7906	3.67739	0.0260626	3.8961e-4	0.122153	0.0177751
chr12	123204871	123204971	5443775	0	-	0.37	(0.35,0.378]	chr12	520832	11	INTRON	INTRON	MPHOSPH9	ENSG00000051825.15	ENST00000606320.6:ENST00000541076.6:ENST00000545556.6:ENST00000302373.8:ENST00000539024.5:ENST00000539336.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	155	2	2.01591	2.79058	3.56525	0.00208904	9.22227e-5	0.0424943	0.00854209
chr1	35932542	35932642	71158	0	+	0.26	[0,0.28]	chr1	9132	7	INTRON	INTRON	AGO3	ENSG00000126070.20	ENST00000324350.9:ENST00000397828.3:ENST00000634486.1:ENST00000373191.9:ENST00000246314.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	59	2	2.77716	2.79056	2.80396	0.022039	0.0161429	0.115395	0.109464
chr1	61173324	61173424	128305	0	+	0.36	(0.35,0.378]	chr1	14778	404	INTRON	INTRON	NFIA	ENSG00000162599.17	ENST00000371191.5:ENST00000664495.1:ENST00000476646.5:ENST00000407417.7:ENST00000479364.1:ENST00000371189.8:ENST00000670151.1:ENST00000664149.1:ENST00000662015.1:ENST00000403491.8:ENST00000371187.7:ENST00000485903.6:ENST00000371185.6:ENST00000371184.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	60	2	2.59046	2.79045	2.99044	0.00894806	0.00528327	0.0799922	0.0656295
chr10	63259353	63259453	4633321	0	-	0.37	(0.35,0.378]	chr10	426215	390	INTRON	INTRON	JMJD1C	ENSG00000171988.20	ENST00000399262.7:ENST00000402544.5:ENST00000542921.5:ENST00000469152.5:ENST00000489372.4:ENST00000633035.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	60	2	2.59046	2.79045	2.99044	0.00894806	0.00528327	0.0799922	0.0656295
chr19	21408114	21408212	7040934	0	+	0.377551	(0.35,0.378]	chr19	702031	7	UTR3	UTR3:EXON_MRNA:INTRON	ZNF493	ENSG00000196268.12	ENST00000596302.5:ENST00000392288.7:ENST00000355504.4:ENST00000594390.5:ENST00000339914.6:ENST00000598152.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	81	2	2.66568	2.79042	2.91516	0.00496487	0.0013628	0.0615009	0.0339121
chr10	131912898	131912998	4536985	0	+	0.36	(0.35,0.378]	chr10	418865	3	SS5_PROX	SS5_PROX:INTRON	PPP2R2D	ENSG00000175470.20	ENST00000455566.6:ENST00000616467.4:ENST00000482010.6:ENST00000470416.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	60	2	2.49643	2.7903700000000002	3.08431	0.00752974	0.0065853	0.0773151	0.0701901
chr12	131930635	131930729	5250015	0	+	0.585106	(0.57,1]	chr12	499248	1	INTRON	INTRON	PUS1	ENSG00000177192.14	ENST00000443358.6:ENST00000322060.9:ENST00000376649.8:ENST00000542167.2:ENST00000538037.5:ENST00000544662.1:ENST00000456665.6:ENST00000544213.5:ENST00000535067.5:ENST00000537484.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	51	2	2.44817	2.790355	3.13254	0.00310655	4.98378e-4	0.0512344	0.0206993
chr11	34076742	34076842	4767907	0	+	0.47	(0.44,0.476]	chr11	440977	1	SS5_PROX	SS5_PROX:INTRON	CAPRIN1	ENSG00000135387.21	ENST00000341394.9:ENST00000528856.5:ENST00000389645.7:ENST00000532820.5:ENST00000530820.5:ENST00000529307.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	104	2	2.45769	2.790335	3.12298	0.00166589	4.66209e-4	0.0369207	0.0195589
chr20	32786001	32786101	7256894	0	+	0.47	(0.44,0.476]	chr20	737139	1	SS3_PROX	SS3_PROX:INTRON	DNMT3B	ENSG00000088305.19	ENST00000696232.1:ENST00000328111.6:ENST00000696231.1:ENST00000348286.6:ENST00000353855.6:ENST00000696233.1:ENST00000443239.7:ENST00000696234.1:ENST00000696235.1:ENST00000456297.6:ENST00000696236.1:ENST00000696237.1:ENST00000201963.3:ENST00000696238.1:ENST00000696239.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	89	2	2.76603	2.790325	2.81462	0.00247064	6.78182e-4	0.0446195	0.0236375
chr7	152234317	152234417	3679251	0	-	0.41	(0.408,0.44]	chr7	341561	36	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000683200.1:ENST00000682283.1:ENST00000473186.5:ENST00000679882.1:ENST00000680969.1:ENST00000681033.1:ENST00000679645.1:ENST00000684550.1:ENST00000489110.2:ENST00000681838.1:ENST00000683490.1:ENST00000418673.2:ENST00000684140.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	57	2	1.94273	2.7902899999999997	3.63785	0.0456237	4.70012e-4	0.149888	0.0196294
chr8	105353487	105353586	3837590	0	+	0.323232	(0.32,0.35]	chr8	354033	334	INTRON	INTRON	ZFPM2	ENSG00000169946.14	ENST00000518180.1:ENST00000407775.7:ENST00000520492.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	107	2	2.53107	2.790285	3.0495	0.00860484	1.90742e-4	0.0784134	0.01201
chr7	149197437	149197536	3445346	0	+	0.515152	(0.476,0.515]	chr7	321361	13	INTRON	INTRON	ZNF282	ENSG00000170265.12	ENST00000610704.5:ENST00000479907.1	protein_coding	protein_coding	protein_coding	protein_coding	4	66	2	2.3346	2.79028	3.24596	0.00494807	0.00322919	0.0646039	0.0507087
chr20	57396530	57396630	7288822	0	+	0.61	(0.57,1]	chr20	741605	28	INTRON	INTRON	RBM38	ENSG00000132819.17	ENST00000356208.10:ENST00000440234.6:ENST00000342690.4:ENST00000344785.10:ENST00000371219.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	47	2	2.64903	2.790265	2.9315	9.85026e-4	9.1984e-4	0.0288488	0.0278396
chr4	82357724	82357817	2177370	0	-	0.322581	(0.32,0.35]	chr4	214132	4	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	HNRNPD	ENSG00000138668.19	ENST00000313899.12:ENST00000353341.8:ENST00000514325.1:ENST00000352301.8:ENST00000514671.5:ENST00000513584.1:ENST00000509263.5:ENST00000507010.5:ENST00000515432.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	65	2	2.3471	2.7902050000000003	3.23331	0.0156413	0.00315414	0.101393	0.0515261
chr2	87457847	87457947	825944	0	+	0.4	(0.378,0.408]	chr2	92407	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	CYTOR:ENSG00000284879	ENSG00000222041.12:ENSG00000284879.1	ENST00000642796.1:ENST00000643589.1:ENST00000642451.1:ENST00000646386.1:ENST00000644478.1:ENST00000409139.6:ENST00000331944.10:ENST00000644125.1:ENST00000643743.1:ENST00000644577.1:ENST00000643276.1:ENST00000409898.2:ENST00000419680.6:ENST00000645257.1:ENST00000644976.1:ENST00000643070.1:ENST00000646855.1:ENST00000414584.1:ENST00000455131.5:ENST00000646636.1:ENST00000642293.1:ENST00000423846.5:ENST00000644040.1:ENST00000646865.1:ENST00000645138.1	lncRNA	lncRNA	lncRNA	lncRNA	7	131	2	2.43777	2.790175	3.14258	0.00144299	1.5815e-4	0.034834	0.0114628
chr19	16078149	16078249	7025985	0	+	0.47	(0.44,0.476]	chr19	699179	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	TPM4	ENSG00000167460.17	ENST00000646974.2:ENST00000586499.6:ENST00000647464.2:ENST00000668959.1:ENST00000590180.3:ENST00000655004.1:ENST00000642789.1:ENST00000653979.1:ENST00000645471.1:ENST00000659595.1:ENST00000647037.1:ENST00000587201.6:ENST00000643579.2:ENST00000586193.6:ENST00000643494.1:ENST00000670382.1:ENST00000300933.9:ENST00000646575.1:ENST00000586833.7:ENST00000642221.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	57	2	2.55649	2.790075	3.02366	0.00670547	0.00603307	0.0707084	0.0700813
chr2	15439262	15439361	1071927	0	-	0.393939	(0.378,0.408]	chr2	114368	111	INTRON	INTRON	NBAS	ENSG00000151779.13	ENST00000281513.10	protein_coding	protein_coding	protein_coding	protein_coding	9	155	2	2.18363	2.79007	3.39651	0.00235136	1.95261e-5	0.0435844	0.00339939
chr1	17416946	17417046	384753	0	-	0.36	(0.35,0.378]	chr1	45464	3	SS3_PROX	SS3_PROX:INTRON	RCC2	ENSG00000179051.14	ENST00000375436.9:ENST00000375433.3	protein_coding	protein_coding	protein_coding	protein_coding	4	74	2	2.1686	2.7899950000000002	3.41139	0.0116706	0.00143263	0.0891208	0.0347139
chr7	155722240	155722340	3452683	0	+	0.43	(0.408,0.44]	chr7	322702	34	INTRON	INTRON	RBM33	ENSG00000184863.11	ENST00000401878.8:ENST00000307403.6:ENST00000440108.5:ENST00000392761.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	59	2	1.74775	2.7899599999999998	3.83217	0.0735403	1.79883e-4	0.190238	0.0116696
chr11	5445909	5446009	4897680	0	-	0.4	(0.378,0.408]	chr11	459193	45	INTRON	INTRON	HBG2:ENSG00000239920:HBE1:OR51B5	ENSG00000196565.15:ENSG00000239920.2:ENSG00000213931.7:ENSG00000167355.8	ENST00000380252.6:ENST00000380259.7:ENST00000292896.3:ENST00000380237.5:ENST00000420726.6:ENST00000420465.6:ENST00000415970.6:ENST00000418729.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:nonsense_mediated_decay:processed_transcript	4	78	2	2.74646	2.78995	2.83344	0.00271684	0.00244811	0.0481064	0.0445777
chr1	52881865	52881965	105307	0	+	0.35	(0.32,0.35]	chr1	13773	2	SS5_PROX	SS5_PROX:INTRON	ZYG11A	ENSG00000203995.10	ENST00000371532.5:ENST00000612017.4:ENST00000371528.2	protein_coding	protein_coding	protein_coding	protein_coding	7	144	2	2.6666	2.789865	2.91313	6.41184e-4	5.34642e-4	0.0231685	0.0209063
chr4	39710867	39710967	1953119	0	+	0.34	(0.32,0.35]	chr4	195630	121	INTRON	INTRON	UBE2K	ENSG00000078140.14	ENST00000510934.5:ENST00000261427.10:ENST00000438068.6:ENST00000513231.5:ENST00000503368.5:ENST00000445950.2:ENST00000510719.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	77	2	2.3011	2.78984	3.27858	0.00617969	0.00368368	0.0713552	0.0535094
chr17	57512933	57513033	6635327	0	+	0.41	(0.408,0.44]	chr17	648062	253	INTRON	INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000674961.1:ENST00000582453.5:ENST00000675656.1:ENST00000322684.7:ENST00000442934.6:ENST00000579180.2:ENST00000579205.5:ENST00000579505.5:ENST00000582772.1:ENST00000674898.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	57	2	2.49218	2.78978	3.08738	0.00855168	0.00478231	0.0780217	0.0636201
chr19	1422796	1422896	6995254	0	+	0.37	(0.35,0.378]	chr19	693199	4	SS5_PROX	SS5_PROX:INTRON	DAZAP1	ENSG00000071626.17	ENST00000336761.10:ENST00000233078.9:ENST00000592522.5:ENST00000586579.5:ENST00000587079.5:ENST00000592453.2:ENST00000589484.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	25	460	2	2.61086	2.78974	2.96862	7.15863e-5	1.07872e-6	0.00761173	5.972e-4
chr17	46347640	46347739	6785947	0	-	0.494949	(0.476,0.515]	chr17	669312	75	INTRON	INTRON	ARL17B	ENSG00000228696.10	ENST00000570618.5:ENST00000656849.1:ENST00000434041.6:ENST00000572991.5:ENST00000622877.4:ENST00000575698.5:ENST00000575960.5:ENST00000571246.5:ENST00000450673.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	77	2	1.99699	2.78971	3.58243	0.0110277	6.18479e-4	0.0873897	0.0223951
chr1	45594873	45594973	93310	0	+	0.41	(0.408,0.44]	chr1	12578	1	SS5_PROX	SS5_PROX:INTRON	NASP	ENSG00000132780.17	ENST00000437901.6:ENST00000537798.5:ENST00000437362.6:ENST00000350030.8:ENST00000464190.6:ENST00000527359.5:ENST00000528084.5:ENST00000453748.5:ENST00000525515.5:ENST00000527470.5:ENST00000529333.5:ENST00000531532.5:ENST00000530840.5:ENST00000528238.5:ENST00000534101.1:ENST00000470768.5:ENST00000372052.8:ENST00000351223.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	56	2	2.33431	2.7897049999999997	3.2451	0.0129219	0.00337792	0.0990564	0.0516884
chr2	27470029	27470128	1087611	0	-	0.353535	(0.35,0.378]	chr2	116613	28	INTRON	INTRON	IFT172	ENSG00000138002.16	ENST00000675690.1:ENST00000260570.8:ENST00000507184.5:ENST00000675410.1:ENST00000674932.1:ENST00000676119.1:ENST00000674824.1:ENST00000674701.1:ENST00000675826.1:ENST00000676101.1:ENST00000675963.1:ENST00000675618.1:ENST00000675729.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	45	2	2.47065	2.78964	3.10863	0.0386172	0.00470896	0.142656	0.0631419
chr4	67707560	67707659	1965150	0	+	0.353535	(0.35,0.378]	chr4	197299	57	INTRON	INTRON	UBA6-DT	ENSG00000248049.8	ENST00000660649.1:ENST00000654961.1:ENST00000656992.1:ENST00000500538.7:ENST00000498917.2:ENST00000665294.1:ENST00000693410.1:ENST00000667140.1:ENST00000666396.1:ENST00000506606.1:ENST00000664183.1:ENST00000663060.1:ENST00000660972.1:ENST00000665498.1:ENST00000514109.1	lncRNA	lncRNA	lncRNA	lncRNA	2	45	2	2.47065	2.78964	3.10863	0.0386172	0.00470896	0.142656	0.0631419
chr5	65561264	65561363	2634277	0	-	0.353535	(0.35,0.378]	chr5	250197	4	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	CENPK	ENSG00000123219.13	ENST00000514814.5:ENST00000396679.6:ENST00000508421.5:ENST00000510693.5:ENST00000506282.6:ENST00000505960.5:ENST00000515497.5:ENST00000515873.5:ENST00000510768.5:ENST00000510354.1:ENST00000504508.1:ENST00000508311.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	45	2	2.47065	2.78964	3.10863	0.0386172	0.00470896	0.142656	0.0631419
chr2	23792443	23792543	1079580	0	-	0.26	[0,0.28]	chr2	115224	34	INTRON	INTRON	ATAD2B	ENSG00000119778.15	ENST00000238789.10:ENST00000381024.4:ENST00000474583.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	80	2	2.09899	2.78962	3.48025	0.0371453	0.00162172	0.139304	0.0369782
chr3	42628398	42628495	1406258	0	+	0.381443	(0.378,0.408]	chr3	147680	13	EXON_MRNA	EXON_MRNA:INTRON	NKTR	ENSG00000114857.19	ENST00000468735.6:ENST00000429888.5:ENST00000232978.13:ENST00000465584.5:ENST00000466553.1:ENST00000498730.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	24	345	2	2.13328	2.789605	3.44593	1.58092e-4	3.91895e-6	0.0108079	0.00142759
chr5	181241048	181241140	2783891	0	-	0.48913	(0.476,0.515]	chr5	262931	2	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	RACK1	ENSG00000204628.12	ENST00000512805.6:ENST00000511473.5:ENST00000504325.5:ENST00000507756.5:ENST00000502905.5:ENST00000511566.5:ENST00000376817.8:ENST00000508682.5:ENST00000504128.5:ENST00000504726.1:ENST00000511900.5:ENST00000513060.5:ENST00000512968.5:ENST00000510199.5:ENST00000502844.5:ENST00000507000.5:ENST00000514183.5:ENST00000502548.5:ENST00000502890.5:ENST00000503494.5:ENST00000506312.3:ENST00000503081.1:ENST00000515417.5:ENST00000513027.3:ENST00000626067.1:ENST00000505461.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	14	238	2	2.66102	2.78955	2.91808	5.56483e-5	4.52733e-5	0.00652225	0.00547142
chr9	33045811	33045910	4243061	0	-	0.30303	(0.28,0.32]	chr9	390017	42	UTR3	UTR3:EXON_MRNA	SMU1	ENSG00000122692.9	ENST00000397149.4	protein_coding	protein_coding	protein_coding	protein_coding	4	85	2	2.02902	2.789485	3.54995	0.0174423	0.00157396	0.11269	0.0361918
chr1	88701415	88701515	155940	0	+	0.34	(0.32,0.35]	chr1	17045	164	INTRON	INTRON	PKN2	ENSG00000065243.20	ENST00000316005.11:ENST00000370521.8:ENST00000370513.9	protein_coding	protein_coding	protein_coding	protein_coding	3	64	2	2.49929	2.78932	3.07935	0.00776612	0.00724137	0.0787356	0.0729826
chr1	223845053	223845153	643370	0	-	0.5	(0.476,0.515]	chr1	75964	191	INTRON	INTRON	TP53BP2	ENSG00000143514.17	ENST00000343537.12:ENST00000391878.6:ENST00000465119.1:ENST00000472180.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	41	2	2.63168	2.7893	2.94692	0.0237106	0.00794331	0.118716	0.0797304
chr12	104487411	104487511	5210988	0	+	0.5	(0.476,0.515]	chr12	493315	295	INTRON	INTRON	CHST11	ENSG00000171310.11	ENST00000303694.6:ENST00000547956.1:ENST00000549260.5:ENST00000546689.1	protein_coding	protein_coding	protein_coding	protein_coding	2	41	2	2.63168	2.7893	2.94692	0.0237106	0.00794331	0.118716	0.0797304
chr12	119781619	119781718	5431300	0	-	0.343434	(0.32,0.35]	chr12	518948	44	INTRON	INTRON	CIT	ENSG00000122966.17	ENST00000392521.7:ENST00000261833.11:ENST00000677438.1:ENST00000677993.1:ENST00000678087.1:ENST00000678652.1:ENST00000676849.1:ENST00000678677.1:ENST00000545913.6:ENST00000679249.1:ENST00000679120.1:ENST00000677812.1:ENST00000677849.1:ENST00000678494.1:ENST00000612548.4:ENST00000392520.2:ENST00000537607.5:ENST00000676833.1:ENST00000536325.1:ENST00000677927.1:ENST00000676563.1:ENST00000678686.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	48	2	2.4458	2.789285	3.13277	0.0425977	0.00458313	0.148082	0.0622676
chr18	73235920	73236020	6988332	0	-	0.35	(0.32,0.35]	chr18	691704	348	INTRON	INTRON	LINC02864	ENSG00000263711.6	ENST00000584544.5:ENST00000581011.5:ENST00000581862.6:ENST00000669547.1:ENST00000661525.1:ENST00000583405.5	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	2	48	2	2.4458	2.789285	3.13277	0.0425977	0.00458313	0.148082	0.0622676
chr21	36355034	36355133	7404050	0	+	0.343434	(0.32,0.35]	chr21	754328	53	INTRON	INTRON	MORC3	ENSG00000159256.13	ENST00000400485.6:ENST00000487909.5:ENST00000485299.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	48	2	2.4458	2.789285	3.13277	0.0425977	0.00458313	0.148082	0.0622676
chrX	110016551	110016651	7700172	0	+	0.37	(0.35,0.378]	chrX	788130	120	INTRON	INTRON	TMEM164	ENSG00000157600.12	ENST00000372072.7:ENST00000471255.5:ENST00000372073.5:ENST00000372068.7:ENST00000288381.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	45	2	2.78212	2.789275	2.79643	0.0168532	0.013543	0.103549	0.101363
chr1	32656330	32656429	65880	0	+	0.494949	(0.476,0.515]	chr1	8416	39	INTRON	INTRON	RBBP4	ENSG00000162521.19	ENST00000414241.7:ENST00000527118.5:ENST00000373493.10:ENST00000401893.7:ENST00000524393.5:ENST00000492348.6:ENST00000526193.5:ENST00000525506.1:ENST00000373485.5:ENST00000477563.6:ENST00000458695.6:ENST00000490500.5:ENST00000445722.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	41	2	2.69967	2.78923	2.87879	0.0195838	0.00999149	0.109483	0.0879541
chr6	34295440	34295540	3083800	0	-	0.48	(0.476,0.515]	chr6	288622	4	SS5_PROX	SS5_PROX:INTRON	NUDT3:RPS10-NUDT3	ENSG00000272325.2:ENSG00000270800.3	ENST00000607016.2:ENST00000639725.1:ENST00000639877.1:ENST00000605528.2	protein_coding	protein_coding	protein_coding	protein_coding	2	41	2	2.69967	2.78923	2.87879	0.0195838	0.00999149	0.109483	0.0879541
chr9	131149950	131150025	4215874	0	+	0.48	(0.476,0.515]	chr9	386574	1	EXON_LNCRNA	EXON_LNCRNA:SS3_PROX:INTRON	NUP214	ENSG00000126883.19	ENST00000695497.1:ENST00000695498.1:ENST00000695496.1:ENST00000695495.1:ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000651022.1:ENST00000525980.5:ENST00000530630.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	41	2	2.69967	2.78923	2.87879	0.0195838	0.00999149	0.109483	0.0879541
chr17	82448022	82448118	6853253	0	-	0.5	(0.476,0.515]	chr17	679293	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	CYBC1	ENSG00000178927.18	ENST00000306645.10:ENST00000342572.12:ENST00000434650.6:ENST00000584024.5:ENST00000437807.6:ENST00000585044.5:ENST00000578895.5:ENST00000583617.5:ENST00000582725.5:ENST00000577436.5:ENST00000585064.5:ENST00000577732.5:ENST00000578919.5:ENST00000580560.5:ENST00000581196.5:ENST00000584503.5:ENST00000585080.5:ENST00000577888.5:ENST00000577707.5:ENST00000578913.5:ENST00000584891.5:ENST00000584408.5:ENST00000577696.5:ENST00000577471.5:ENST00000577834.5:ENST00000578941.5:ENST00000578064.1:ENST00000582395.5:ENST00000582608.5:ENST00000583359.1:ENST00000582545.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	193	2	2.45188	2.7891500000000002	3.12642	3.94592e-4	2.14354e-5	0.0178567	0.00377331
chr19	1426846	1426946	6995295	0	+	0.52	(0.515,0.57]	chr19	693206	6	EXON_MRNA	EXON_MRNA:INTRON	DAZAP1	ENSG00000071626.17	ENST00000336761.10:ENST00000233078.9:ENST00000592522.5:ENST00000586579.5:ENST00000587079.5:ENST00000592453.2:ENST00000589484.5:ENST00000585485.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	10	121	2	1.93853	2.78905	3.63957	0.00251219	2.92494e-5	0.0465056	0.00449807
chr12	112050011	112050111	5414819	0	-	0.3	(0.28,0.32]	chr12	517164	4	SS3_PROX	SS3_PROX:INTRON	NAA25	ENSG00000111300.10	ENST00000261745.9:ENST00000552527.5:ENST00000549711.5:ENST00000551858.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	114	2	2.71415	2.78902	2.86389	0.005045	5.73871e-4	0.0621586	0.0217493
chr7	119669064	119669164	3628027	0	-	0.34	(0.32,0.35]	chr7	337315	1686	INTRON	INTRON	LINC02476	ENSG00000225546.6	ENST00000660268.1	lncRNA	lncRNA	lncRNA	lncRNA	9	175	2	2.21829	2.7889749999999998	3.35966	0.00246683	3.29752e-5	0.0446195	0.00460627
chr8	128021213	128021313	3862346	0	+	0.46	(0.44,0.476]	chr8	355521	41	INTRON	INTRON	PVT1	ENSG00000249859.13	ENST00000667305.1:ENST00000690350.1:ENST00000653522.1:ENST00000661830.1:ENST00000657289.1:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000657211.1:ENST00000653845.1:ENST00000651587.1:ENST00000692980.1:ENST00000654324.1:ENST00000657693.1:ENST00000666080.1:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000662410.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000657356.1:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000667714.1:ENST00000654105.1:ENST00000664995.1:ENST00000670714.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000668123.1:ENST00000666776.1:ENST00000659912.1:ENST00000670532.1:ENST00000523068.2:ENST00000671088.1:ENST00000663461.1:ENST00000513868.6:ENST00000692433.1:ENST00000523190.7:ENST00000685606.1:ENST00000690788.1:ENST00000685634.1:ENST00000653990.1:ENST00000655783.1:ENST00000656411.1:ENST00000664742.1:ENST00000655099.1:ENST00000662709.1:ENST00000512617.7:ENST00000660122.1:ENST00000666452.1:ENST00000659666.1:ENST00000659892.1:ENST00000521600.5:ENST00000522875.5:ENST00000653497.1:ENST00000668098.1:ENST00000659106.1:ENST00000666147.1:ENST00000658350.1:ENST00000656999.1:ENST00000664610.1:ENST00000671092.1:ENST00000653853.1	lncRNA	lncRNA	lncRNA	lncRNA	6	108	2	2.73545	2.788925	2.8424	7.908e-4	6.35745e-4	0.0258324	0.0231636
chr2	8770204	8770297	1061330	0	-	0.516129	(0.515,0.57]	chr2	113172	9	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	KIDINS220	ENSG00000134313.17	ENST00000569008.2:ENST00000689369.1:ENST00000693394.1:ENST00000689852.1:ENST00000693432.1:ENST00000496383.5:ENST00000256707.8:ENST00000687912.1:ENST00000685097.1:ENST00000473731.5:ENST00000687894.1:ENST00000691030.1:ENST00000686906.1:ENST00000488729.5:ENST00000489024.5:ENST00000638224.1:ENST00000459813.2:ENST00000692419.1:ENST00000689531.1:ENST00000686179.1:ENST00000692889.1:ENST00000687240.1:ENST00000690607.1:ENST00000319688.5:ENST00000689114.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	57	2	2.27116	2.7889049999999997	3.30665	0.00601759	0.00213226	0.0700813	0.041756
chr12	120873510	120873610	5435599	0	-	0.35	(0.32,0.35]	chr12	519663	380	INTRON	INTRON	SPPL3	ENSG00000157837.16	ENST00000353487.7:ENST00000536996.5:ENST00000543608.5:ENST00000543854.5	protein_coding	protein_coding	protein_coding	protein_coding	2	48	2	2.78073	2.7889	2.79707	0.0170923	0.01481	0.106702	0.104099
chr15	78894404	78894491	6069774	0	+	0.413793	(0.408,0.44]	chr15	578247	3	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MORF4L1	ENSG00000185787.15	ENST00000379535.8:ENST00000331268.9:ENST00000426013.7:ENST00000558746.5:ENST00000559345.5:ENST00000561171.5:ENST00000558502.5:ENST00000560710.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	13	223	2	2.65903	2.788805	2.91858	1.98832e-4	1.21368e-5	0.0129331	0.00258902
chr16	19078448	19078545	6312691	0	+	0.412371	(0.408,0.44]	chr16	604184	4	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	COQ7	ENSG00000167186.11	ENST00000321998.10:ENST00000568985.5:ENST00000569127.1	protein_coding	protein_coding	protein_coding	protein_coding	3	60	2	2.75707	2.788745	2.82042	0.0120121	0.00317496	0.0962115	0.0503542
chr4	24550011	24550109	2118662	0	-	0.479592	(0.476,0.515]	chr4	209230	6	INTRON	INTRON	DHX15	ENSG00000109606.13	ENST00000336812.5	protein_coding	protein_coding	protein_coding	protein_coding	3	55	2	2.63396	2.78873	2.9435	0.00929849	0.00426634	0.0817766	0.0596808
chrX	124039409	124039508	7717537	0	+	0.525253	(0.515,0.57]	chrX	789512	14	INTRON	INTRON	STAG2	ENSG00000101972.20	ENST00000218089.13:ENST00000455404.5:ENST00000483575.5:ENST00000687810.1:ENST00000687071.1:ENST00000469481.1:ENST00000371160.5:ENST00000435103.5:ENST00000687852.1:ENST00000371145.8:ENST00000692982.1:ENST00000371157.7:ENST00000691035.1:ENST00000686802.1:ENST00000691383.1:ENST00000686127.1:ENST00000371144.7:ENST00000458176.5:ENST00000466748.5:ENST00000471107.1:ENST00000428941.5:ENST00000435215.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	106	2	1.86103	2.788615	3.7162	0.00757303	1.22791e-5	0.0749063	0.0026103
chr2	201218035	201218133	982531	0	+	0.459184	(0.44,0.476]	chr2	105520	4	UTR3	UTR3:EXON_MRNA:INTRON	CASP10	ENSG00000003400.16	ENST00000272879.9:ENST00000346817.10:ENST00000696199.1:ENST00000286186.11:ENST00000448480.1	protein_coding	protein_coding	protein_coding	protein_coding	4	74	2	2.67282	2.7886100000000003	2.9044	0.00433875	0.00132926	0.0579868	0.0335085
chr5	141564374	141564473	2739613	0	-	0.363636	(0.35,0.378]	chr5	258073	38	INTRON	INTRON	DIAPH1	ENSG00000131504.18	ENST00000647433.1:ENST00000389054.8:ENST00000518047.5	protein_coding	protein_coding	protein_coding	protein_coding	4	72	2	2.28182	2.7885600000000004	3.2953	0.00637232	0.0031465	0.0724821	0.0500431
chr12	55984105	55984204	5144965	0	+	0.484848	(0.476,0.515]	chr12	485924	28	INTRON	INTRON	RAB5B	ENSG00000111540.16	ENST00000553116.5:ENST00000549505.5:ENST00000360299.10:ENST00000546810.1:ENST00000548068.5:ENST00000549915.5:ENST00000448789.2:ENST00000551459.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	55	2	2.37731	2.7885299999999997	3.19975	0.0111793	0.00383299	0.0937192	0.0542786
chr3	128802766	128802863	1497986	0	+	0.525773	(0.515,0.57]	chr3	156364	2	INTRON	INTRON	RAB7A	ENSG00000075785.14	ENST00000676214.1:ENST00000675864.1:ENST00000675712.1:ENST00000676425.1:ENST00000490093.6:ENST00000675342.1:ENST00000265062.8:ENST00000674748.1:ENST00000493186.6:ENST00000482525.5:ENST00000675497.1:ENST00000674589.1:ENST00000464496.5:ENST00000485280.1:ENST00000483906.5:ENST00000676147.1:ENST00000674593.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	48	2	2.15051	2.788475	3.42644	0.0238113	0.00106731	0.118889	0.0300133
chr21	37082083	37082181	7404909	0	+	0.540816	(0.515,0.57]	chr21	754522	6	UTR5	UTR5:EXON_MRNA:INTRON	TTC3	ENSG00000182670.14	ENST00000492275.6:ENST00000418766.6:ENST00000485402.5:ENST00000450533.6:ENST00000438055.5:ENST00000696812.1:ENST00000696811.1:ENST00000463216.6:ENST00000481605.6:ENST00000540756.5:ENST00000494243.5:ENST00000399010.5:ENST00000411496.2:ENST00000399017.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	64	2	2.48902	2.788455	3.08789	0.00760558	4.83127e-4	0.0749571	0.0199261
chr6	34375266	34375365	3084600	0	-	0.454545	(0.44,0.476]	chr6	288633	329	INTRON	INTRON	NUDT3:RPS10-NUDT3	ENSG00000272325.2:ENSG00000270800.3	ENST00000607016.2:ENST00000639725.1:ENST00000639877.1:ENST00000605528.2	protein_coding	protein_coding	protein_coding	protein_coding	3	55	2	2.49823	2.788425	3.07862	0.00718224	0.0060153	0.0756118	0.0674604
chr1	201859394	201859494	292071	0	+	0.39	(0.378,0.408]	chr1	33588	4	SS5_PROX	SS5_PROX:INTRON	IPO9	ENSG00000198700.10	ENST00000361565.9	protein_coding	protein_coding	protein_coding	protein_coding	4	77	2	2.5938	2.7883750000000003	2.98295	0.00614976	9.47389e-4	0.0676501	0.0282007
chr19	911092	911192	7110917	0	-	0.38	(0.378,0.408]	chr19	714174	81	INTRON	INTRON	R3HDM4	ENSG00000198858.10	ENST00000589428.5:ENST00000361574.10:ENST00000587975.2:ENST00000590454.2:ENST00000589445.1:ENST00000626716.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	77	2	2.5938	2.7883750000000003	2.98295	0.00614976	9.47389e-4	0.0676501	0.0282007
chr6	136782019	136782119	3235537	0	-	0.32	(0.28,0.32]	chr6	300700	611	INTRON	INTRON	MAP3K5	ENSG00000197442.10	ENST00000359015.5	protein_coding	protein_coding	protein_coding	protein_coding	3	71	2	2.24061	2.788285	3.33596	0.0194267	0.00342993	0.119831	0.0517761
chr1	31331104	31331203	61507	0	+	0.393939	(0.378,0.408]	chr1	7841	116	INTRON	INTRON	ZCCHC17	ENSG00000121766.16	ENST00000618216.4:ENST00000546109.5:ENST00000616393.4:ENST00000616859.4:ENST00000615916.4:ENST00000479629.5:ENST00000373714.5:ENST00000344147.10:ENST00000627541.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	43	2	2.78705	2.788255	2.78946	0.0158859	0.0135539	0.101453	0.101363
chr12	57072487	57072587	5336786	0	-	0.4	(0.378,0.408]	chr12	510375	3	SS5_PROX	SS5_PROX:INTRON	NEMP1	ENSG00000166881.10	ENST00000300128.9:ENST00000379391.7:ENST00000554340.1:ENST00000553654.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	43	2	2.78705	2.788255	2.78946	0.0158859	0.0135539	0.101453	0.101363
chr18	2792957	2793057	6866300	0	+	0.39	(0.378,0.408]	chr18	680200	76	INTRON	INTRON	SMCHD1	ENSG00000101596.17	ENST00000320876.11:ENST00000688342.1:ENST00000577880.5:ENST00000584897.5:ENST00000686763.1:ENST00000686864.1:ENST00000688708.1:ENST00000645355.1:ENST00000688964.1:ENST00000685656.1:ENST00000689034.1:ENST00000642953.1:ENST00000689800.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	43	2	2.78705	2.788255	2.78946	0.0158859	0.0135539	0.101453	0.101363
chr20	13772815	13772915	7316384	0	-	0.4	(0.378,0.408]	chr20	744943	2	SS3_PROX	SS3_PROX:INTRON	ESF1	ENSG00000089048.15	ENST00000202816.5:ENST00000617257.2	protein_coding	protein_coding	protein_coding	protein_coding	2	43	2	2.78705	2.788255	2.78946	0.0158859	0.0135539	0.101453	0.101363
chrX	136872843	136872943	7897603	0	-	0.33	(0.32,0.35]	chrX	804148	6	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RBMX	ENSG00000147274.14	ENST00000561733.5:ENST00000431446.7:ENST00000496459.2:ENST00000568578.5:ENST00000419968.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	14	287	2	2.69141	2.78824	2.88507	9.49434e-5	7.61652e-5	0.00869602	0.00732363
chr15	82347729	82347829	6246947	0	-	0.37	(0.35,0.378]	chr15	596116	1	SS3_PROX	SS3_PROX:INTRON	GOLGA6L10	ENSG00000278662.6	ENST00000610657.2:ENST00000621197.4:ENST00000558035.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	62	2	1.87717	2.7882249999999997	3.69928	0.0555068	3.94786e-4	0.165463	0.0178567
chr19	9670044	9670144	7133454	0	-	0.43	(0.408,0.44]	chr19	718911	88	INTRON	INTRON	ZNF562	ENSG00000171466.10	ENST00000453372.7:ENST00000293648.8:ENST00000590155.5:ENST00000585688.5:ENST00000587392.5:ENST00000588653.5:ENST00000589542.1:ENST00000585350.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	79	2	2.06888	2.788095	3.50731	0.00864911	8.5918e-4	0.0787025	0.0265787
chr2	55419016	55419079	1124392	0	-	0.47619	(0.44,0.476]	chr2	120589	1	CDS_START	CDS_START:CDS:EXON_MRNA	CCDC88A	ENSG00000115355.18	ENST00000263630.13:ENST00000436346.7:ENST00000336838.10:ENST00000642200.1:ENST00000413716.7:ENST00000643413.1:ENST00000647401.1:ENST00000645311.1:ENST00000646796.1:ENST00000645571.1:ENST00000645477.1:ENST00000645072.1:ENST00000644890.1:ENST00000644630.1:ENST00000647098.1:ENST00000642890.1:ENST00000647517.1:ENST00000645031.1:ENST00000645529.1:ENST00000644033.1:ENST00000644193.1:ENST00000647341.1:ENST00000644127.1:ENST00000644157.1:ENST00000471947.2:ENST00000642784.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	114	2	2.17708	2.788055	3.39903	0.00336887	1.07749e-4	0.0516668	0.00878438
chr6	7235462	7235561	2799653	0	+	0.40404	(0.378,0.408]	chr6	263786	29	INTRON	INTRON	RREB1	ENSG00000124782.21	ENST00000379933.7:ENST00000379938.7:ENST00000349384.10:ENST00000334984.10	protein_coding	protein_coding	protein_coding	protein_coding	6	89	2	1.70653	2.78802	3.86951	0.0219966	1.55755e-4	0.115395	0.0106835
chr18	191746	191845	6855162	0	+	0.323232	(0.32,0.35]	chr18	679521	111	INTRON	INTRON	USP14	ENSG00000101557.15	ENST00000582707.5:ENST00000400266.7:ENST00000261601.8:ENST00000578942.5:ENST00000383589.6:ENST00000583119.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	107	2	1.88021	2.7880149999999997	3.69582	0.00751788	7.3931e-4	0.0773151	0.0249744
chr2	20339341	20339441	1076672	0	-	0.23	[0,0.28]	chr2	115047	59	INTRON	INTRON	PUM2	ENSG00000055917.16	ENST00000361078.7:ENST00000442400.5:ENST00000420234.5:ENST00000429419.6:ENST00000432105.5:ENST00000446940.5:ENST00000424110.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	150	2	2.71503	2.7879899999999997	2.86095	0.00369266	6.30678e-4	0.0535094	0.0226622
chr19	910594	910694	7110912	0	-	0.37	(0.35,0.378]	chr19	714174	76	INTRON	INTRON	R3HDM4	ENSG00000198858.10	ENST00000589428.5:ENST00000361574.10:ENST00000587975.2:ENST00000590454.2:ENST00000589445.1:ENST00000626716.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	108	2	1.60373	2.78794	3.97215	0.016652900000000002	1.84105e-4	0.110511	0.0123213
chr2	32003987	32004087	1091051	0	-	0.42	(0.408,0.44]	chr2	116913	408	INTRON	INTRON	MEMO1:DPY30	ENSG00000162959.14:ENSG00000162961.14	ENST00000295065.9:ENST00000446765.5:ENST00000404530.6:ENST00000490459.5:ENST00000426310.6:ENST00000413686.1:ENST00000407893.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	56	2	2.11447	2.7877549999999998	3.46104	0.0285207	0.00105552	0.12666	0.0299229
chr4	126691366	126691466	2237623	0	-	0.34	(0.32,0.35]	chr4	219023	2259	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	15	251	2	2.38027	2.787675	3.19508	1.66545e-4	1.22344e-4	0.0118326	0.00945967
chr17	82094819	82094919	6851252	0	-	0.64	(0.57,1]	chr17	678894	1	SS5_PROX	SS5_PROX:INTRON	FASN	ENSG00000169710.9	ENST00000306749.4:ENST00000634990.1:ENST00000635197.1:ENST00000637525.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	116	2	2.75206	2.7876000000000003	2.82314	7.00401e-5	5.09372e-6	0.00692867	0.00167333
chr22	21426333	21426432	7481262	0	+	0.444444	(0.44,0.476]	chr22	763209	52	INTRON	INTRON	HIC2	ENSG00000169635.10	ENST00000407464.7:ENST00000407598.2	protein_coding	protein_coding	protein_coding	protein_coding	9	155	2	2.77152	2.78759	2.80366	3.06617e-4	1.09809e-4	0.0161362	0.0088711
chr3	47109600	47109699	1681052	0	-	0.484848	(0.476,0.515]	chr3	171593	31	INTRON	INTRON	SETD2	ENSG00000181555.22	ENST00000691544.1:ENST00000638947.2:ENST00000686876.1:ENST00000431180.5:ENST00000409792.4:ENST00000330022.11:ENST00000686773.1:ENST00000685005.1:ENST00000690461.1:ENST00000685505.1:ENST00000692883.1:ENST00000693321.1:ENST00000688290.1:ENST00000691902.1:ENST00000690157.1:ENST00000692362.1:ENST00000445387.5:ENST00000685399.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	89	2	2.53419	2.78758	3.04097	0.00251905	7.0601e-4	0.0446195	0.0241881
chr12	31306220	31306319	5302656	0	-	0.434343	(0.408,0.44]	chr12	504668	7	INTRON	INTRON	SINHCAF	ENSG00000139146.14	ENST00000337682.9:ENST00000539409.5:ENST00000454658.6:ENST00000542983.1:ENST00000539004.5:ENST00000543615.1:ENST00000536836.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	56	2	2.31565	2.787565	3.25948	0.0154718	0.00246454	0.100909	0.0459102
chr17	57279817	57279917	6632982	0	+	0.49	(0.476,0.515]	chr17	648006	20	EXON_MRNA	EXON_MRNA:INTRON	MSI2:ENSG00000279555	ENSG00000153944.12:ENSG00000279555.1	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000581776.5:ENST00000674961.1:ENST00000582453.5:ENST00000675656.1:ENST00000322684.7:ENST00000579590.5:ENST00000676073.1:ENST00000675822.1:ENST00000623762.1	protein_coding	protein_coding	protein_coding:TEC	protein_coding:nonsense_mediated_decay:TEC:processed_transcript	4	74	2	2.76855	2.78753	2.80651	0.00250121	0.00244302	0.0456956	0.0446195
chr14	102644906	102645006	5823056	0	+	0.38	(0.378,0.408]	chr14	552490	512	INTRON	INTRON	RCOR1	ENSG00000089902.10	ENST00000262241.7	protein_coding	protein_coding	protein_coding	protein_coding	4	77	2	2.55607	2.787465	3.01886	0.00704647	7.99379e-4	0.0718189	0.0258804
chr6	140874204	140874304	3240891	0	-	0.4	(0.378,0.408]	chr6	301060	80	INTRON	INTRON	ENSG00000234147	ENSG00000234147.3	ENST00000650553.2:ENST00000692940.1:ENST00000683641.1:ENST00000682196.1:ENST00000684320.1:ENST00000683889.1:ENST00000683062.1:ENST00000682608.1:ENST00000455011.2:ENST00000682812.1:ENST00000683340.1:ENST00000683841.1:ENST00000683589.1:ENST00000684268.1:ENST00000683480.1	lncRNA	lncRNA	lncRNA	lncRNA	3	59	2	2.17608	2.7874	3.39872	0.0218783	0.0019852	0.123836	0.0404516
chr6	30616563	30616650	3077363	0	-	0.390805	(0.378,0.408]	chr6	286297	2	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	PPP1R10	ENSG00000204569.10	ENST00000376511.7:ENST00000484449.1:ENST00000473954.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	15	263	2	2.55133	2.787355	3.02338	1.05432e-4	2.39838e-5	0.00920724	0.00383194
chr1	203802623	203802721	296750	0	+	0.244898	[0,0.28]	chr1	34131	23	UTR3	UTR3:UTR5:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	ZC3H11A:ZBED6	ENSG00000058673.17:ENSG00000257315.3	ENST00000367210.3:ENST00000453771.5:ENST00000432282.5:ENST00000638800.1:ENST00000367214.5:ENST00000639812.1:ENST00000367212.7:ENST00000332127.8:ENST00000550078.2:ENST00000495527.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	20	405	2	2.08985	2.78735	3.48485	7.00514e-4	3.58393e-5	0.0241881	0.00508104
chr4	151010805	151010905	2271727	0	-	0.46	(0.44,0.476]	chr4	220921	814	INTRON	INTRON	LRBA	ENSG00000198589.14	ENST00000357115.9:ENST00000651943.2:ENST00000510413.5:ENST00000651035.1:ENST00000507224.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	66	2	2.26452	2.787315	3.31011	0.00654074	0.00259023	0.0735539	0.0452934
chr12	76046536	76046636	5369810	0	-	0.31	(0.28,0.32]	chr12	512241	101	UTR3	UTR3:EXON_MRNA	NAP1L1	ENSG00000187109.15	ENST00000618691.5	protein_coding	protein_coding	protein_coding	protein_coding	4	95	2	2.77917	2.78729	2.79541	0.00376367	0.00285651	0.0539127	0.0494641
chr14	23076548	23076648	5842790	0	-	0.35	(0.32,0.35]	chr14	555623	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	ACIN1	ENSG00000100813.15	ENST00000605057.6:ENST00000262710.5:ENST00000457657.5:ENST00000555053.5:ENST00000555352.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	64	2	2.45306	2.78726	3.12146	0.00916394	0.00630799	0.0855292	0.0687526
chr6	167002197	167002296	3033393	0	+	0.333333	(0.32,0.35]	chr6	282627	17	INTRON	INTRON	CEP43	ENSG00000213066.13	ENST00000622353.4:ENST00000366847.9:ENST00000349556.4:ENST00000494781.5:ENST00000476078.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	77	2	2.37199	2.7870749999999997	3.20216	0.00480708	0.00465833	0.0629753	0.0602209
chrX	71410044	71410144	7678684	0	+	0.49	(0.476,0.515]	chrX	786269	15	INTRON	INTRON	TAF1	ENSG00000147133.17	ENST00000683202.1:ENST00000373790.9:ENST00000423759.6:ENST00000683782.1:ENST00000683668.1:ENST00000276072.9:ENST00000463163.5:ENST00000373775.8:ENST00000485087.6:ENST00000437147.8:ENST00000683358.1:ENST00000682124.1:ENST00000461764.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	66	2	2.11679	2.78695	3.45711	0.0115627	0.00140905	0.0962115	0.0340865
chr9	125330318	125330418	4198955	0	+	0.47	(0.44,0.476]	chr9	383225	1	SS5_PROX	SS5_PROX:INTRON	GAPVD1	ENSG00000165219.23	ENST00000497580.5:ENST00000297933.11:ENST00000470056.5:ENST00000394105.6:ENST00000394083.6:ENST00000495955.5:ENST00000467750.5:ENST00000394104.6:ENST00000312123.13:ENST00000431329.5:ENST00000436712.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	16	276	2	2.51353	2.7869	3.06027	4.18963e-4	1.13513e-6	0.0189528	6.13219e-4
chr11	66637166	66637265	4811009	0	+	0.525253	(0.515,0.57]	chr11	447879	74	INTRON	INTRON	RBM14-RBM4	ENSG00000248643.5	ENST00000412278.2:ENST00000511114.1:ENST00000421355.1:ENST00000500635.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	106	2	2.04765	2.786775	3.5259	0.00329866	4.10167e-5	0.0511863	0.00519615
chr3	49999039	49999139	1423550	0	+	0.37	(0.35,0.378]	chr3	149989	2	SS3_PROX	SS3_PROX:INTRON	RBM6	ENSG00000004534.15	ENST00000442092.5:ENST00000443081.5:ENST00000419610.5:ENST00000441115.5:ENST00000422955.5:ENST00000454079.5:ENST00000266022.9:ENST00000425608.5:ENST00000434592.5:ENST00000464013.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	97	2	2.66007	2.78662	2.91317	0.00189062	0.00123668	0.0392053	0.0326427
chr17	41988366	41988457	6770569	0	-	0.362637	(0.35,0.378]	chr17	666620	6	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DNAJC7	ENSG00000168259.17	ENST00000316603.12:ENST00000457167.9:ENST00000586335.2:ENST00000674306.1:ENST00000426588.7:ENST00000674355.1:ENST00000674504.1:ENST00000674472.1:ENST00000674233.1:ENST00000674166.1:ENST00000674179.1:ENST00000674481.1:ENST00000674249.1:ENST00000585866.6:ENST00000589576.6:ENST00000674214.1:ENST00000588814.5:ENST00000590774.6:ENST00000674303.1:ENST00000674453.1:ENST00000674252.1:ENST00000674287.1:ENST00000674497.1:ENST00000674411.1:ENST00000585693.2:ENST00000674337.1:ENST00000590847.2:ENST00000674485.1:ENST00000674175.1:ENST00000589810.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	47	2	2.1617	2.7865450000000003	3.41139	0.0771502	0.00143263	0.196285	0.0347139
chr1	8817059	8817159	373782	0	-	0.62	(0.57,1]	chr1	43565	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000656437.1:ENST00000659924.1	protein_coding	protein_coding	protein_coding	protein_coding	3	30	2	2.47993	2.78653	3.09313	0.007207	0.00369015	0.0756278	0.0535094
chr17	77424564	77424663	6680892	0	+	0.565657	(0.515,0.57]	chr17	652542	43	INTRON	INTRON	SEPTIN9	ENSG00000184640.20	ENST00000591198.5:ENST00000427177.6:ENST00000431235.6:ENST00000449803.6:ENST00000329047.13:ENST00000588575.1:ENST00000590294.6:ENST00000588690.6:ENST00000423034.6:ENST00000590059.5:ENST00000427674.6:ENST00000592420.1:ENST00000585930.5:ENST00000591020.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	49	2	2.58624	2.786505	2.98677	0.00632549	0.00526399	0.0722266	0.0633874
chr4	164271982	164272082	2288806	0	-	0.31	(0.28,0.32]	chr4	221697	367	INTRON	INTRON	MARCHF1	ENSG00000145416.14	ENST00000503008.5:ENST00000514618.6:ENST00000507270.5:ENST00000508725.5:ENST00000505391.5:ENST00000515471.5:ENST00000510075.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	70	2	2.18092	2.78648	3.39204	0.0271832	0.00188405	0.123904	0.0402736
chr21	37074368	37074467	7404831	0	+	0.545455	(0.515,0.57]	chr21	754521	5	INTRON	INTRON	TTC3	ENSG00000182670.14	ENST00000492275.6:ENST00000418766.6:ENST00000485402.5:ENST00000450533.6:ENST00000438055.5:ENST00000696812.1:ENST00000696811.1:ENST00000463216.6:ENST00000481605.6:ENST00000540756.5:ENST00000494243.5:ENST00000399010.5:ENST00000411496.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	66	2	1.94449	2.78635	3.62821	0.0122196	4.12866e-4	0.0910127	0.0181365
chr7	6046901	6046991	3476121	0	-	0.255556	[0,0.28]	chr7	325218	3	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	EIF2AK1	ENSG00000086232.13	ENST00000199389.11:ENST00000495565.5:ENST00000474029.5:ENST00000431744.5:ENST00000463213.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	96	2	2.09841	2.78632	3.47423	0.0151026	0.00268371	0.108435	0.0464781
chr12	56272487	56272586	5334069	0	-	0.414141	(0.408,0.44]	chr12	509532	7	UTR3	UTR3:EXON_MRNA:INTRON	CS	ENSG00000062485.19	ENST00000351328.8:ENST00000549143.5:ENST00000548567.5:ENST00000548746.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	68	2	2.15938	2.786305	3.41323	0.011260300000000001	0.00129989	0.0884004	0.0333764
chr12	49645417	49645516	5321420	0	-	0.494949	(0.476,0.515]	chr12	507149	91	UTR3	UTR3:EXON_MRNA	FMNL3	ENSG00000161791.14	ENST00000335154.10:ENST00000550488.5:ENST00000352151.9:ENST00000549137.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	41	2	2.56033	2.78615	3.01197	0.0287634	0.00633162	0.127066	0.0722266
chr3	15764135	15764235	1623481	0	-	0.48	(0.476,0.515]	chr3	168003	77	INTRON	INTRON	ANKRD28	ENSG00000206560.12	ENST00000399451.6:ENST00000624145.3:ENST00000683139.1:ENST00000412318.5:ENST00000497037.5:ENST00000451422.1:ENST00000498524.5:ENST00000439830.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	41	2	2.56033	2.78615	3.01197	0.0287634	0.00633162	0.127066	0.0722266
chr15	41232346	41232445	6003872	0	+	0.515152	(0.476,0.515]	chr15	571184	5	INTRON	INTRON	CHP1	ENSG00000187446.12	ENST00000558351.5:ENST00000560411.5:ENST00000560784.5:ENST00000392151.6:ENST00000561280.5:ENST00000334660.10:ENST00000560397.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	41	2	2.7646	2.785945	2.80729	0.0162075	0.0126008	0.101453	0.0980703
chr3	43438426	43438526	1673598	0	-	0.48	(0.476,0.515]	chr3	170972	53	INTRON	INTRON	ANO10	ENSG00000160746.13	ENST00000292246.8:ENST00000350459.8:ENST00000396091.7:ENST00000414522.6:ENST00000451430.6:ENST00000448045.1	protein_coding	protein_coding	protein_coding	protein_coding	2	41	2	2.7646	2.785945	2.80729	0.0162075	0.0126008	0.101453	0.0980703
chr3	138757077	138757176	1830719	0	-	0.484848	(0.476,0.515]	chr3	184043	7	INTRON	INTRON	PIK3CB	ENSG00000051382.9	ENST00000674063.1:ENST00000289153.6:ENST00000477593.5:ENST00000462898.5:ENST00000483968.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	41	2	2.7646	2.785945	2.80729	0.0162075	0.0126008	0.101453	0.0980703
chr5	146245319	146245419	2514539	0	+	0.36	(0.35,0.378]	chr5	240194	75	INTRON	INTRON	ENSG00000275740:RBM27	ENSG00000275740.1:ENSG00000091009.8	ENST00000506502.2:ENST00000265271.7	protein_coding	protein_coding	protein_coding	protein_coding	4	73	2	2.5337	2.78592	3.03814	0.00767003	0.0022093	0.075364	0.0435144
chr11	70361794	70361894	4821357	0	+	0.46	(0.44,0.476]	chr11	449527	3	SS3_PROX	SS3_PROX:INTRON	PPFIA1	ENSG00000131626.19	ENST00000253925.12:ENST00000389547.7:ENST00000532504.5:ENST00000648755.1:ENST00000644155.1:ENST00000526262.5:ENST00000528750.1:ENST00000530390.5:ENST00000527612.1:ENST00000638133.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	43	2	2.20949	2.7859	3.36231	0.0672585	0.00161678	0.183051	0.0369204
chr1	207698888	207698988	304492	0	+	0.45	(0.44,0.476]	chr1	35029	3	SS3_PROX	SS3_PROX:INTRON	CR1L	ENSG00000197721.17	ENST00000508064.7:ENST00000530905.1:ENST00000294997.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	44	2	2.39604	2.78588	3.17572	0.0404291	0.00427037	0.161534	0.0573912
chr20	57408539	57408639	7288945	0	+	0.47	(0.44,0.476]	chr20	741618	8	UTR3	UTR3:EXON_MRNA	RBM38	ENSG00000132819.17	ENST00000356208.10:ENST00000344785.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	194	2	2.43073	2.78585	3.14097	1.86292e-4	4.78677e-5	0.0119078	0.00598448
chr1	61140927	61141027	127981	0	+	0.43	(0.408,0.44]	chr1	14778	80	INTRON	INTRON	NFIA	ENSG00000162599.17	ENST00000371191.5:ENST00000664495.1:ENST00000476646.5:ENST00000407417.7:ENST00000479364.1:ENST00000371189.8:ENST00000670151.1:ENST00000664149.1:ENST00000662015.1:ENST00000403491.8:ENST00000371187.7:ENST00000485903.6:ENST00000371185.6:ENST00000371184.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	11	191	2	2.67236	2.785805	2.89925	1.8474e-4	4.98073e-5	0.0123515	0.00578624
chr1	55043442	55043542	108511	0	+	0.58	(0.57,1]	chr1	14164	2	SS3_PROX	SS3_PROX:INTRON	PCSK9	ENSG00000169174.11	ENST00000673726.1:ENST00000302118.5:ENST00000673903.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	41	2	1.94024	2.78574	3.63124	0.0116325	2.87208e-4	0.0889284	0.0150568
chr2	199402530	199402630	1308695	0	-	0.36	(0.35,0.378]	chr2	136882	43	INTRON	INTRON	SATB2	ENSG00000119042.17	ENST00000614512.4:ENST00000417098.6:ENST00000260926.9:ENST00000443023.5:ENST00000428695.5:ENST00000457245.5:ENST00000484124.1:ENST00000440919.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	111	2	2.42249	2.785595	3.1487	0.0016343	6.87038e-4	0.0372392	0.024008
chr15	28669620	28669715	5988747	0	+	0.6	(0.57,1]	chr15	569388	9	INTRON	INTRON	HERC2P9	ENSG00000206149.11	ENST00000529624.5:ENST00000530420.5:ENST00000528584.5	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript:transcribed_unprocessed_pseudogene	5	41	2	2.22366	2.785585	3.34751	0.00344378	0.00122677	0.0539802	0.0320791
chr13	95159793	95159892	5638439	0	-	0.353535	(0.35,0.378]	chr13	537060	110	INTRON	INTRON	ABCC4	ENSG00000125257.16	ENST00000645237.2:ENST00000643051.1:ENST00000643842.1:ENST00000646439.1:ENST00000643816.1:ENST00000536256.3:ENST00000643556.1:ENST00000629385.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	74	2	2.6295	2.785305	2.94111	0.0104563	0.00142732	0.0855102	0.0347139
chr11	12979535	12979633	4915968	0	-	0.418367	(0.408,0.44]	chr11	460663	4	EXON_LNCRNA	EXON_LNCRNA:INTRON	LINC00958	ENSG00000251381.8	ENST00000658243.1:ENST00000527945.2:ENST00000671253.1:ENST00000653758.1:ENST00000662291.1:ENST00000671577.1:ENST00000663902.1:ENST00000653958.1:ENST00000526388.2:ENST00000504230.2:ENST00000531402.6:ENST00000534477.6	lncRNA	lncRNA	lncRNA	lncRNA	11	152	2	1.74112	2.7850799999999998	3.82904	0.00575332	1.66007e-5	0.0682011	0.00326835
chr17	41852753	41852852	6769631	0	-	0.30303	(0.28,0.32]	chr17	666406	44	UTR3	UTR3:EXON_MRNA	KLHL11	ENSG00000178502.6	ENST00000319121.4	protein_coding	protein_coding	protein_coding	protein_coding	4	84	2	2.4468	2.78506	3.12332	0.00698537	0.0037095	0.0718189	0.0561833
chr2	186496331	186496431	942915	0	+	0.49	(0.476,0.515]	chr2	103246	6	INTRON	INTRON	ZC3H15	ENSG00000065548.18	ENST00000421536.5:ENST00000337859.11:ENST00000437396.1:ENST00000481101.5:ENST00000468120.5:ENST00000496289.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	76	2	2.2792	2.78497	3.29074	0.00299196	0.00272563	0.0503888	0.0467523
chr10	78037876	78037964	4475919	0	+	0.261364	[0,0.28]	chr10	411987	6	EXON_MRNA	EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPS24	ENSG00000138326.21	ENST00000613865.5:ENST00000435275.5:ENST00000645440.1:ENST00000440692.6:ENST00000360830.9:ENST00000372360.9:ENST00000464716.6:ENST00000485708.7:ENST00000478655.6:ENST00000645698.1:ENST00000476545.6:ENST00000465692.2:ENST00000482069.5:ENST00000645195.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	12	291	2	1.89538	2.78492	3.67446	0.00836151	3.29214e-6	0.0774402	0.00118351
chr1	108959371	108959471	519138	0	-	0.32	(0.28,0.32]	chr1	60933	2	SS3_PROX	SS3_PROX:INTRON	CLCC1	ENSG00000121940.17	ENST00000690509.1:ENST00000687328.1:ENST00000685014.1:ENST00000685540.1:ENST00000686576.1:ENST00000688070.1:ENST00000691513.1:ENST00000686821.1:ENST00000692511.1:ENST00000689479.1:ENST00000687646.1:ENST00000687998.1:ENST00000687226.1:ENST00000693336.1:ENST00000689991.1:ENST00000687591.1:ENST00000691777.1:ENST00000690756.1:ENST00000688778.1:ENST00000685104.1:ENST00000689103.1:ENST00000687734.1:ENST00000686434.1:ENST00000685497.1:ENST00000691342.1:ENST00000686776.1:ENST00000692342.1:ENST00000689351.1:ENST00000692584.1:ENST00000692775.1:ENST00000687134.1:ENST00000675018.1:ENST00000690781.1:ENST00000691556.1:ENST00000689189.1:ENST00000687099.1:ENST00000685791.1:ENST00000687865.1:ENST00000687449.1:ENST00000688285.1:ENST00000369968.7:ENST00000674992.1:ENST00000675001.1:ENST00000369969.7:ENST00000356970.6:ENST00000688610.1:ENST00000675128.1:ENST00000693089.1:ENST00000675571.1:ENST00000675650.1:ENST00000369970.8:ENST00000674561.2:ENST00000675654.1:ENST00000675790.1:ENST00000675584.1:ENST00000692795.1:ENST00000691731.1:ENST00000689359.1:ENST00000676392.2:ENST00000676391.2:ENST00000676454.1:ENST00000674849.1:ENST00000675956.1:ENST00000302500.5:ENST00000675508.1:ENST00000688168.1:ENST00000693673.1:ENST00000692404.1:ENST00000686078.1:ENST00000690874.1:ENST00000692732.1:ENST00000685628.1:ENST00000676306.1:ENST00000676059.2:ENST00000674527.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	53	2	2.2609	2.784915	3.30893	0.0671429	0.00260504	0.183051	0.0470772
chr4	34328229	34328329	2125588	0	-	0.3	(0.28,0.32]	chr4	209578	586	INTRON	INTRON	LINC02484	ENSG00000248685.6	ENST00000658479.1	lncRNA	lncRNA	lncRNA	lncRNA	2	53	2	2.2609	2.784915	3.30893	0.0671429	0.00260504	0.183051	0.0470772
chr5	72910510	72910608	2388098	0	+	0.336735	(0.32,0.35]	chr5	230509	19	UTR3	UTR3:EXON_MRNA	TNPO1	ENSG00000083312.19	ENST00000680533.1:ENST00000337273.10:ENST00000680025.1:ENST00000681711.1:ENST00000679378.1:ENST00000680111.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	104	2	2.75463	2.784915	2.8152	0.00387748	6.37027e-4	0.0543578	0.0228285
chr11	66844039	66844138	4812368	0	+	0.464646	(0.44,0.476]	chr11	448053	1	EXON_MRNA	EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RCE1	ENSG00000173653.8	ENST00000533277.5:ENST00000524506.5:ENST00000309657.8:ENST00000524849.5:ENST00000530610.1:ENST00000532775.5:ENST00000525356.1:ENST00000534645.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	43	2	2.49112	2.7848699999999997	3.07862	0.0315968	0.0060153	0.144381	0.0674604
chr14	34613726	34613825	5866940	0	-	0.454545	(0.44,0.476]	chr14	557216	36	INTRON	INTRON	SNX6	ENSG00000129515.20	ENST00000362031.10:ENST00000396526.7:ENST00000652385.1:ENST00000556162.6:ENST00000555416.6:ENST00000557265.6:ENST00000556712.6:ENST00000557341.6:ENST00000556303.1:ENST00000555648.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	43	2	2.49112	2.7848699999999997	3.07862	0.0315968	0.0060153	0.144381	0.0674604
chr7	23368858	23368957	3502644	0	-	0.323232	(0.32,0.35]	chr7	326877	58	INTRON	INTRON	IGF2BP3	ENSG00000136231.14	ENST00000258729.8:ENST00000421467.6:ENST00000468263.5:ENST00000492771.5:ENST00000479504.5:ENST00000466809.6:ENST00000491719.5:ENST00000465058.5:ENST00000469723.5:ENST00000474105.5:ENST00000476938.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	65	2	2.38582	2.7848699999999997	3.18392	0.0138529	0.00379806	0.0953077	0.0562562
chr4	26363128	26363227	1937098	0	+	0.414141	(0.408,0.44]	chr4	194373	1	INTRON	INTRON	RBPJ	ENSG00000168214.22	ENST00000512351.5:ENST00000681799.1:ENST00000681403.1:ENST00000342295.6:ENST00000512671.6:ENST00000506956.5:ENST00000345843.8:ENST00000361572.10:ENST00000514380.5:ENST00000514807.5:ENST00000348160.9:ENST00000681506.1:ENST00000509158.6:ENST00000691085.1:ENST00000692303.1:ENST00000681856.1:ENST00000513182.5:ENST00000681025.1:ENST00000681679.1:ENST00000680210.1:ENST00000355476.8:ENST00000680140.1:ENST00000511401.5:ENST00000680511.1:ENST00000510778.7:ENST00000679698.1:ENST00000679469.1:ENST00000681484.1:ENST00000505958.6:ENST00000507561.5:ENST00000514730.5:ENST00000507574.5:ENST00000514675.5:ENST00000515573.5:ENST00000689192.1:ENST00000680928.1:ENST00000681260.1:ENST00000681093.1:ENST00000504423.2:ENST00000511546.5:ENST00000342320.8:ENST00000504907.5:ENST00000514656.3:ENST00000511451.5:ENST00000681264.1:ENST00000504938.1:ENST00000680204.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	77	2	1.73753	2.78485	3.83217	0.0275537	1.79883e-4	0.123904	0.0116696
chr17	42248328	42248428	6771944	0	-	0.35	(0.32,0.35]	chr17	666964	158	INTRON	INTRON	STAT5B	ENSG00000173757.10	ENST00000293328.8:ENST00000468312.1:ENST00000415845.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	98	2	2.0516	2.78484	3.51808	0.00531074	0.00151238	0.0659476	0.0352794
chr1	206604027	206604108	624782	0	-	0.395062	(0.378,0.408]	chr1	74398	5	INTRON	INTRON	EIF2D	ENSG00000143486.16	ENST00000271764.7:ENST00000367114.7:ENST00000613435.1:ENST00000437518.1:ENST00000461334.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	57	2	2.51464	2.78483	3.05502	0.00689519	0.00684341	0.0748032	0.0717484
chr13	32526721	32526818	5572732	0	-	0.402062	(0.378,0.408]	chr13	532566	8	INTRON	INTRON	N4BP2L2	ENSG00000244754.9	ENST00000357505.10:ENST00000399396.7:ENST00000504114.5:ENST00000446957.6:ENST00000674456.1:ENST00000674161.1:ENST00000674422.1:ENST00000674272.1:ENST00000674452.1:ENST00000674384.1:ENST00000505213.5:ENST00000674219.1:ENST00000267068.5:ENST00000674349.1:ENST00000674428.1:ENST00000674465.1:ENST00000674421.1:ENST00000674180.1:ENST00000674297.1:ENST00000674480.1:ENST00000674377.1:ENST00000674437.1:ENST00000674327.1:ENST00000674399.1:ENST00000674196.1:ENST00000674163.1:ENST00000511143.5:ENST00000674484.1:ENST00000475731.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	57	2	2.51464	2.78483	3.05502	0.00689519	0.00684341	0.0748032	0.0717484
chr9	137210203	137210303	4222959	0	+	0.49	(0.476,0.515]	chr9	387980	35	INTRON	INTRON	NDOR1	ENSG00000188566.15	ENST00000613750.1:ENST00000371521.8:ENST00000612145.1:ENST00000684003.1:ENST00000427047.6:ENST00000458322.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	57	2	2.62236	2.78464	2.94692	0.00794331	0.00517	0.0797304	0.0631506
chrX	123662246	123662345	7878337	0	-	0.474747	(0.44,0.476]	chrX	802527	165	INTRON	INTRON	THOC2	ENSG00000125676.20	ENST00000245838.13:ENST00000355725.8:ENST00000491737.5	protein_coding	protein_coding	protein_coding	protein_coding	4	74	2	2.51554	2.7846349999999997	3.05373	0.00777207	6.56725e-4	0.0757731	0.0232396
chr12	93431171	93431270	5388131	0	-	0.494949	(0.476,0.515]	chr12	513727	64	INTRON	INTRON	UBE2N	ENSG00000177889.10	ENST00000318066.7:ENST00000550657.1:ENST00000549833.1:ENST00000549490.1:ENST00000552442.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	68	2	1.86014	2.78448	3.70882	0.0277606	4.74495e-4	0.137011	0.0201638
chr2	161343025	161343125	901458	0	+	0.24	[0,0.28]	chr2	99704	238	INTRON	INTRON	PSMD14	ENSG00000115233.12	ENST00000409682.8:ENST00000437630.1	protein_coding	protein_coding	protein_coding	protein_coding	2	59	2	2.38757	2.784475	3.18138	0.0552962	0.00487606	0.165463	0.0640618
chr12	120198281	120198357	5433281	0	-	0.631579	(0.57,1]	chr12	519353	4	SS5_PROX	SS5_PROX:INTRON	RPLP0	ENSG00000089157.16	ENST00000392514.9:ENST00000551150.5:ENST00000546989.5:ENST00000313104.9:ENST00000228306.8:ENST00000552461.5:ENST00000549098.5:ENST00000551258.5:ENST00000546990.5:ENST00000547211.5:ENST00000547475.5:ENST00000547173.5:ENST00000550856.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	37	2	2.43624	2.78439	3.13254	0.00310655	0.00279586	0.0512344	0.0469265
chr17	44062801	44062900	6778356	0	-	0.494949	(0.476,0.515]	chr17	668123	222	INTRON	INTRON	LSM12	ENSG00000161654.10	ENST00000591247.6:ENST00000293406.8:ENST00000585388.2	protein_coding	protein_coding	protein_coding	protein_coding	2	42	2	2.3223	2.7843	3.2463	0.0519312	0.00262374	0.159306	0.0470772
chr4	73202999	73203099	2160268	0	-	0.29	(0.28,0.32]	chr4	212794	251	INTRON	INTRON	ANKRD17	ENSG00000132466.20	ENST00000358602.9:ENST00000558247.5:ENST00000330838.10:ENST00000509867.6:ENST00000561029.1:ENST00000559367.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	53	2	2.60656	2.7842149999999997	2.96187	0.0256827	0.0114995	0.133676	0.0889104
chr12	74251977	74252076	5367968	0	-	0.525253	(0.515,0.57]	chr12	512126	10	INTRON	INTRON	LINC02882:ENSG00000257183	ENSG00000251138.7:ENSG00000257183.1	ENST00000663261.1:ENST00000665907.1:ENST00000669556.1:ENST00000653134.1:ENST00000549905.5:ENST00000662107.1:ENST00000658833.1:ENST00000515416.7:ENST00000551726.2:ENST00000670573.1:ENST00000656876.1:ENST00000668228.1:ENST00000668997.1:ENST00000665895.1:ENST00000670471.1:ENST00000658677.1:ENST00000668665.1:ENST00000552046.1	lncRNA	lncRNA	lncRNA	lncRNA	6	89	2	2.5204	2.7841899999999997	3.04798	9.8022e-4	5.9198e-4	0.0285591	0.0221485
chr11	70418863	70418958	4821828	0	+	0.484211	(0.476,0.515]	chr11	449634	14	INTRON	INTRON	CTTN	ENSG00000085733.16	ENST00000346329.7:ENST00000301843.13:ENST00000376561.7:ENST00000415461.2:ENST00000532334.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	89	2	2.21025	2.78416	3.35807	0.00913757	1.37324e-4	0.0812335	0.0100829
chr1	88799995	88800095	156934	0	+	0.37	(0.35,0.378]	chr1	17083	134	INTRON	INTRON	PKN2	ENSG00000065243.20	ENST00000316005.11:ENST00000370521.8:ENST00000370513.9:ENST00000436111.1	protein_coding	protein_coding	protein_coding	protein_coding	3	60	2	2.39583	2.784135	3.17244	0.0107976	0.00487788	0.0920575	0.0607461
chr12	53021215	53021315	5141567	0	+	0.34	(0.32,0.35]	chr12	484997	1	SS3_PROX	SS3_PROX:INTRON	EIF4B	ENSG00000063046.18	ENST00000551527.5:ENST00000549077.5:ENST00000549645.5:ENST00000262056.14:ENST00000420463.7:ENST00000551002.5:ENST00000416762.7:ENST00000550704.5:ENST00000549481.5:ENST00000552490.5:ENST00000550390.1:ENST00000550025.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	64	2	2.67068	2.784055	2.89743	0.0127608	0.00406276	0.0926667	0.0578984
chr11	70278492	70278591	4820488	0	+	0.30303	(0.28,0.32]	chr11	449381	57	INTRON	INTRON	PPFIA1	ENSG00000131626.19	ENST00000253925.12:ENST00000389547.7:ENST00000532504.5:ENST00000530746.1:ENST00000532024.1:ENST00000648755.1:ENST00000644155.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	52	2	2.39347	2.784	3.17453	0.0504457	0.00429297	0.156383	0.0599065
chr3	150412504	150412603	1533466	0	+	0.282828	(0.28,0.32]	chr3	159801	8	INTRON	INTRON	TSC22D2	ENSG00000196428.13	ENST00000361875.8:ENST00000688009.1:ENST00000480589.1:ENST00000466814.1:ENST00000485421.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	52	2	2.39347	2.784	3.17453	0.0504457	0.00429297	0.156383	0.0599065
chrX	45111801	45111899	7651032	0	+	0.265306	[0,0.28]	chrX	782882	5	UTR3	UTR3:EXON_MRNA	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1:ENST00000675525.1:ENST00000414389.5:ENST00000675546.1:ENST00000431196.3:ENST00000479423.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	110	2	2.27384	2.78396	3.29408	0.0233847	3.71636e-4	0.11839	0.0173669
chr21	28961388	28961460	7436368	0	-	0.402778	(0.378,0.408]	chr21	758376	2	UTR3	UTR3:EXON_MRNA:INTRON	LTN1	ENSG00000198862.14	ENST00000614971.4:ENST00000389194.7:ENST00000361371.10:ENST00000389195.7	protein_coding	protein_coding	protein_coding	protein_coding	4	69	2	2.46509	2.783915	3.10274	0.00586642	0.00287152	0.0668095	0.0494641
chr5	458325	458425	2313222	0	+	0.37	(0.35,0.378]	chr5	223778	3	SS5_PROX	SS5_PROX:INTRON	EXOC3	ENSG00000180104.16	ENST00000512944.6:ENST00000515601.6:ENST00000315013.9:ENST00000503889.2:ENST00000510028.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	72	2	2.39519	2.7838149999999997	3.17244	0.00487788	0.00401951	0.0607461	0.0578189
chr22	22552608	22552708	7562398	0	-	0.3	(0.28,0.32]	chr22	773609	4	SS5_PROX	SS5_PROX:INTRON	PRAME	ENSG00000185686.18	ENST00000492657.5:ENST00000398743.6:ENST00000405655.8:ENST00000543184.5:ENST00000398741.5:ENST00000402697.5:ENST00000439106.5:ENST00000438888.5:ENST00000420709.5:ENST00000476336.5:ENST00000485532.1:ENST00000406503.1:ENST00000442481.5:ENST00000403441.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	144	2	2.44355	2.7836499999999997	3.12375	0.00104535	9.82119e-4	0.0294493	0.0288015
chr10	60781698	60781797	4435800	0	+	0.434343	(0.408,0.44]	chr10	409170	11	INTRON	INTRON	CDK1	ENSG00000170312.17	ENST00000519078.6:ENST00000475504.6:ENST00000316629.8:ENST00000519760.1:ENST00000395284.8:ENST00000448257.6:ENST00000373809.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	9	133	2	2.13281	2.78356	3.43431	0.00143395	1.44222e-4	0.0347139	0.0109794
chr1	27483389	27483489	406697	0	-	0.48	(0.476,0.515]	chr1	48986	541	INTRON	INTRON	WASF2	ENSG00000158195.11	ENST00000618852.5:ENST00000536657.1	protein_coding	protein_coding	protein_coding	protein_coding	12	204	2	2.44068	2.78355	3.12642	2.65088e-4	2.14354e-5	0.0144158	0.00377331
chr22	21981011	21981109	7562010	0	-	0.561224	(0.515,0.57]	chr22	773552	45	INTRON	INTRON	TOP3B	ENSG00000100038.20	ENST00000357179.10:ENST00000457179.5:ENST00000444502.5:ENST00000398793.6:ENST00000424393.5:ENST00000437929.5:ENST00000430142.5:ENST00000456075.5:ENST00000449704.5:ENST00000437103.1:ENST00000434517.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	48	2	2.26012	2.783385	3.30665	0.0160033	0.00213226	0.109464	0.041756
chr5	140640517	140640617	2504323	0	+	0.52	(0.515,0.57]	chr5	239380	1	SS3_PROX	SS3_PROX:INTRON	TMCO6	ENSG00000113119.13	ENST00000513002.5:ENST00000509217.6:ENST00000394671.8:ENST00000511410.5:ENST00000394669.8:ENST00000504069.6:ENST00000515653.1:ENST00000514449.5:ENST00000505086.2:ENST00000252100.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	48	2	2.26012	2.783385	3.30665	0.0160033	0.00213226	0.109464	0.041756
chr3	47432243	47432342	1682416	0	-	0.454545	(0.44,0.476]	chr3	171861	32	INTRON	INTRON	SCAP	ENSG00000114650.21	ENST00000265565.10:ENST00000441517.6:ENST00000320017.10:ENST00000648151.1:ENST00000416208.5:ENST00000416847.5:ENST00000495603.2:ENST00000420588.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	41	2	2.60774	2.78317	2.9586	0.0255874	0.00758318	0.120269	0.0773151
chr9	130585984	130586084	4213156	0	+	0.47	(0.44,0.476]	chr9	386268	40	INTRON	INTRON	FUBP3	ENSG00000107164.16	ENST00000319725.10:ENST00000650723.1:ENST00000465949.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	41	2	2.60774	2.78317	2.9586	0.0255874	0.00758318	0.120269	0.0773151
chr17	62006930	62007028	6810286	0	-	0.44898	(0.44,0.476]	chr17	672912	34	EXON_MRNA	EXON_MRNA:INTRON	MED13:ENSG00000279133	ENSG00000108510.10:ENSG00000279133.1	ENST00000397786.7:ENST00000624147.1	protein_coding	protein_coding	protein_coding:TEC	protein_coding:TEC	3	55	2	2.64669	2.7830950000000003	2.9195	0.0102021	0.0040295	0.0850389	0.0578376
chr3	177143223	177143322	1871903	0	-	0.454545	(0.44,0.476]	chr3	187422	71	INTRON	INTRON	TBL1XR1	ENSG00000177565.18	ENST00000457928.7:ENST00000430069.5:ENST00000673974.1:ENST00000352800.10:ENST00000422442.6:ENST00000428970.5:ENST00000424913.5:ENST00000437738.5:ENST00000431421.5:ENST00000635794.1:ENST00000630796.2:ENST00000450267.5:ENST00000630833.2:ENST00000431674.5:ENST00000422066.5:ENST00000443315.5:ENST00000627825.2:ENST00000427349.5:ENST00000413084.5:ENST00000637137.1:ENST00000491623.2:ENST00000637544.1:ENST00000636187.1:ENST00000636912.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	41	2	2.67572	2.7830950000000003	2.89047	0.0212064	0.00955699	0.113017	0.0863913
chr15	63263816	63263915	6041508	0	+	0.393939	(0.378,0.408]	chr15	575291	3	UTR3	UTR3:EXON_MRNA	RAB8B	ENSG00000166128.13	ENST00000321437.9	protein_coding	protein_coding	protein_coding	protein_coding	3	57	2	2.46345	2.783095	3.10274	0.00827342	0.00586642	0.0813266	0.0668095
chr21	43775144	43775240	7468373	0	-	0.510417	(0.476,0.515]	chr21	761132	5	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	CSTB	ENSG00000160213.9	ENST00000639959.1:ENST00000640406.1:ENST00000480147.3:ENST00000675996.1:ENST00000291568.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	74	2	2.45598	2.783095	3.11021	0.00945755	5.02606e-4	0.0817766	0.020217099999999998
chr6	42990686	42990786	2868023	0	+	0.38	(0.378,0.408]	chr6	271466	6	INTRON	INTRON	PPP2R5D	ENSG00000112640.16	ENST00000394110.7:ENST00000472118.5:ENST00000485511.6:ENST00000230402.10:ENST00000461010.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	57	2	2.46345	2.783095	3.10274	0.00827342	0.00586642	0.0813266	0.0668095
chr3	129169090	129169187	1815176	0	-	0.350515	(0.35,0.378]	chr3	182469	14	UTR3	UTR3:EXON_MRNA	CNBP	ENSG00000169714.17	ENST00000422453.7	protein_coding	protein_coding	protein_coding	protein_coding	4	73	2	1.7942	2.78309	3.77198	0.0378648	2.78147e-4	0.141212	0.0148626
chr14	21269395	21269494	5835171	0	-	0.585859	(0.57,1]	chr14	554478	2	UTR5	UTR5:EXON_MRNA	HNRNPC	ENSG00000092199.19	ENST00000336053.10:ENST00000553300.6:ENST00000554969.5:ENST00000556142.5:ENST00000554455.5:ENST00000553753.5:ENST00000555309.5:ENST00000555914.5:ENST00000557442.5:ENST00000556628.5:ENST00000556513.5:ENST00000555883.5:ENST00000557201.5:ENST00000420743.6:ENST00000554539.5:ENST00000554383.5:ENST00000555215.5:ENST00000555137.5:ENST00000556226.5:ENST00000553614.5:ENST00000557336.1:ENST00000557768.1:ENST00000557033.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	17	144	2	2.59982	2.78308	2.96634	1.09279e-5	2.94662e-6	0.00243701	0.00120829
chr10	74046144	74046243	4454983	0	+	0.414141	(0.408,0.44]	chr10	411397	26	INTRON	INTRON	VCL	ENSG00000035403.18	ENST00000623461.3:ENST00000372755.7:ENST00000624354.3:ENST00000211998.10:ENST00000478896.2:ENST00000461383.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	101	2	1.27107	2.78293	4.29479	0.056267	1.35098e-5	0.166399	0.00274251
chr3	43546719	43546819	1674681	0	-	0.38	(0.378,0.408]	chr3	170972	1136	INTRON	INTRON	ANO10	ENSG00000160746.13	ENST00000292246.8:ENST00000350459.8:ENST00000396091.7:ENST00000414522.6:ENST00000451430.6:ENST00000448045.1	protein_coding	protein_coding	protein_coding	protein_coding	3	58	2	2.39444	2.7826649999999997	3.17089	0.0122858	0.00357279	0.091087	0.0548435
chr16	89647778	89647878	6543680	0	-	0.74	(0.57,1]	chr16	634307	2	CDS	CDS:UTR3:EXON_MRNA:SS3_PROX:INTRON	CHMP1A	ENSG00000131165.16	ENST00000675909.1:ENST00000397901.8:ENST00000676355.1:ENST00000675161.1:ENST00000676402.1:ENST00000675016.1:ENST00000551981.6:ENST00000675309.1:ENST00000547687.2:ENST00000675952.1:ENST00000676342.1:ENST00000535997.7:ENST00000674799.1:ENST00000675536.1:ENST00000549328.2:ENST00000675778.1:ENST00000676118.1:ENST00000675076.1:ENST00000549139.5:ENST00000550102.5:ENST00000548650.1:ENST00000547614.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	12	83	2	1.59031	2.782645	3.97498	0.00821658	1.04936e-6	0.0812248	6.32938e-4
chr2	87616179	87616279	827545	0	+	0.4	(0.378,0.408]	chr2	92489	86	INTRON	INTRON	CYTOR:ENSG00000284879	ENSG00000222041.12:ENSG00000284879.1	ENST00000642796.1:ENST00000644478.1:ENST00000644125.1:ENST00000643276.1:ENST00000646855.1:ENST00000646636.1:ENST00000646578.1:ENST00000644938.1	lncRNA	lncRNA	lncRNA	lncRNA	4	77	2	2.73557	2.78262	2.82967	0.00360869	0.00189968	0.0533855	0.0402736
chr4	128110988	128111087	2043101	0	+	0.393939	(0.378,0.408]	chr4	202892	22	INTRON	INTRON	LARP1B	ENSG00000138709.19	ENST00000512292.5:ENST00000326639.11:ENST00000508819.5:ENST00000649983.1:ENST00000507377.1	protein_coding	protein_coding	protein_coding	protein_coding	4	77	2	2.73557	2.78262	2.82967	0.00360869	0.00189968	0.0533855	0.0402736
chr11	66099965	66100064	4808166	0	+	0.525253	(0.515,0.57]	chr11	447334	154	INTRON	INTRON	PACS1	ENSG00000175115.13	ENST00000320580.9:ENST00000527224.1:ENST00000533756.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	60	2	2.4386	2.782615	3.12663	0.00374498	0.00326739	0.0562234	0.0508595
chr6	156965251	156965350	3009043	0	+	0.424242	(0.408,0.44]	chr6	281124	215	INTRON	INTRON	ARID1B	ENSG00000049618.24	ENST00000346085.10:ENST00000636930.2:ENST00000647938.1:ENST00000350026.10:ENST00000674298.1:ENST00000674190.1:ENST00000414678.7:ENST00000638000.1:ENST00000319584.11:ENST00000452544.2:ENST00000637887.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	42	2	2.36073	2.78255	3.20437	0.0481658	0.00306596	0.153019	0.0509893
chr7	152256515	152256615	3679483	0	-	0.42	(0.408,0.44]	chr7	341597	34	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682916.1:ENST00000682280.1:ENST00000680039.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	42	2	2.36073	2.78255	3.20437	0.0481658	0.00306596	0.153019	0.0509893
chr1	246169557	246169656	677328	0	-	0.525253	(0.515,0.57]	chr1	79721	733	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000391836.3:ENST00000453676.5:ENST00000462422.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	48	2	2.08547	2.78253	3.47959	0.0289426	8.38022e-4	0.1274	0.0263691
chr19	49833074	49833169	7091429	0	+	0.515789	(0.515,0.57]	chr19	710473	3	EXON_MRNA	EXON_MRNA:INTRON	MED25	ENSG00000104973.19	ENST00000593767.3:ENST00000312865.10:ENST00000538643.5:ENST00000595185.5:ENST00000594998.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	48	2	2.08547	2.78253	3.47959	0.0289426	8.38022e-4	0.1274	0.0263691
chr17	59150568	59150668	6802353	0	-	0.49	(0.476,0.515]	chr17	671859	123	INTRON	INTRON	SKA2	ENSG00000182628.13	ENST00000330137.12:ENST00000580541.1:ENST00000578105.1:ENST00000578519.5:ENST00000583927.1:ENST00000581068.5:ENST00000437036.6:ENST00000583380.5:ENST00000583976.1:ENST00000584089.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	66	2	2.06898	2.782425	3.49587	0.0137491	0.00120011	0.10247	0.0315806
chr20	62128030	62128115	7297401	0	+	0.517647	(0.515,0.57]	chr20	742207	1	SS5_PROX	SS5_PROX:INTRON	LSM14B	ENSG00000149657.20	ENST00000279068.11:ENST00000400318.6:ENST00000279069.11:ENST00000361670.3	protein_coding	protein_coding	protein_coding	protein_coding	3	48	2	2.43783	2.78223	3.12663	0.00916404	0.00374498	0.0812949	0.0562234
chr2	242171863	242171961	1057581	0	+	0.418367	(0.408,0.44]	chr2	112783	44	INTRON	INTRON	LINC01881	ENSG00000220804.10	ENST00000683938.1:ENST00000682139.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	3	36	2	1.58763	2.78221	3.97679	0.0639217	0.0299485	0.177824	0.142135
chr20	37197597	37197697	7266317	0	+	0.45	(0.44,0.476]	chr20	738393	129	INTRON	INTRON	RPN2	ENSG00000118705.17	ENST00000456102.5:ENST00000373622.9:ENST00000373632.8:ENST00000237530.11:ENST00000462163.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	56	2	2.74063	2.78207	2.82351	0.0176095	0.00191049	0.105143	0.0403772
chr1	248919847	248919946	352101	0	+	0.424242	(0.408,0.44]	chr1	40719	16	UTR3	UTR3:EXON_MRNA	PGBD2	ENSG00000185220.12	ENST00000355360.8	protein_coding	protein_coding	protein_coding	protein_coding	3	56	2	2.78122	2.7820549999999997	2.78289	0.015812	0.0022785	0.101453	0.0437013
chr7	6037023	6037123	3476013	0	-	0.38	(0.378,0.408]	chr7	325181	2	SS5_PROX	SS5_PROX:INTRON	EIF2AK1	ENSG00000086232.13	ENST00000199389.11	protein_coding	protein_coding	protein_coding	protein_coding	13	231	2	2.33146	2.7820549999999997	3.23265	8.15903e-4	2.69021e-6	0.0263934	0.00105261
chr8	52678366	52678465	3950740	0	-	0.393939	(0.378,0.408]	chr8	362361	14	INTRON	INTRON	RB1CC1	ENSG00000023287.13	ENST00000025008.10:ENST00000435644.6:ENST00000521611.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	92	2	2.69945	2.782045	2.86464	0.00215581	9.70462e-4	0.0417866	0.0286926
chr11	67285450	67285544	4814083	0	+	0.351064	(0.35,0.378]	chr11	448303	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	GRK2	ENSG00000173020.11	ENST00000308595.10:ENST00000526285.1:ENST00000416281.6:ENST00000529738.1:ENST00000524899.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	82	2	2.0847	2.7820150000000003	3.47933	0.00719316	0.0015613	0.0756118	0.0360352
chr6	15378648	15378748	2824274	0	+	0.32	(0.28,0.32]	chr6	265198	40	INTRON	INTRON	JARID2	ENSG00000008083.14	ENST00000341776.7:ENST00000397311.4	protein_coding	protein_coding	protein_coding	protein_coding	3	72	2	1.81582	2.78194	3.74806	0.068122	4.11943e-4	0.184298	0.0181365
chr8	129925311	129925411	4063017	0	-	0.48	(0.476,0.515]	chr8	369828	124	INTRON	INTRON	CYRIB	ENSG00000153310.21	ENST00000694912.1:ENST00000519824.6:ENST00000523288.5:ENST00000519110.5:ENST00000401979.6:ENST00000523509.5:ENST00000522746.5:ENST00000517654.5:ENST00000522250.5:ENST00000519540.5:ENST00000522941.5:ENST00000519142.5:ENST00000518879.5:ENST00000522702.5:ENST00000521223.5:ENST00000520204.5:ENST00000518283.5:ENST00000523993.5:ENST00000520254.5:ENST00000519020.5:ENST00000518167.5:ENST00000517672.5:ENST00000519070.5:ENST00000522361.1:ENST00000518344.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	55	2	2.16377	2.7819000000000003	3.40003	0.0243026	0.00139193	0.12011	0.0341261
chr7	148808006	148808106	3669974	0	-	0.51	(0.476,0.515]	chr7	340538	3	SS3_PROX	SS3_PROX:INTRON	EZH2	ENSG00000106462.12	ENST00000683292.1:ENST00000320356.7:ENST00000492143.5:ENST00000478654.5:ENST00000350995.6:ENST00000460911.5:ENST00000684400.1:ENST00000683744.1:ENST00000684510.1:ENST00000682317.1:ENST00000683293.1:ENST00000682263.1:ENST00000684300.1:ENST00000476773.5:ENST00000483967.5:ENST00000684436.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	101	2	2.14989	2.781895	3.4139	0.00611105	1.00747e-4	0.0676501	0.00847812
chr2	28925888	28925967	725498	0	+	0.265823	[0,0.28]	chr2	83830	4	INTRON	INTRON	WDR43	ENSG00000163811.12	ENST00000407426.8:ENST00000296126.6:ENST00000466067.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	95	2	2.31716	2.781875	3.24659	0.00702731	0.00570201	0.0754576	0.0656459
chr16	66693640	66693740	6501879	0	-	0.42	(0.408,0.44]	chr16	628968	567	INTRON	INTRON	CMTM4	ENSG00000183723.13	ENST00000394106.7:ENST00000330687.8:ENST00000563952.1	protein_coding	protein_coding	protein_coding	protein_coding	2	42	2	2.66579	2.7818699999999996	2.89795	0.019342	0.0110735	0.119831	0.0873897
chr19	21737281	21737381	7158995	0	-	0.44	(0.408,0.44]	chr19	723706	89	INTRON	INTRON	ZNF100	ENSG00000197020.12	ENST00000358296.11:ENST00000305570.10:ENST00000594401.1	protein_coding	protein_coding	protein_coding	protein_coding	2	42	2	2.66579	2.7818699999999996	2.89795	0.019342	0.0110735	0.119831	0.0873897
chr1	45602765	45602865	93392	0	+	0.49	(0.476,0.515]	chr1	12591	4	SS5_PROX	SS5_PROX:INTRON	NASP	ENSG00000132780.17	ENST00000437901.6:ENST00000537798.5:ENST00000437362.6:ENST00000350030.8:ENST00000464190.6:ENST00000527359.5:ENST00000528084.5:ENST00000453748.5:ENST00000525515.5:ENST00000527470.5:ENST00000529333.5:ENST00000531532.5:ENST00000528238.5:ENST00000534101.1:ENST00000470768.5:ENST00000372052.8:ENST00000351223.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	101	2	2.2344	2.78186	3.32932	0.00432475	1.60666e-4	0.0579331	0.0109124
chr10	92316730	92316829	4490103	0	+	0.494949	(0.476,0.515]	chr10	413499	50	INTRON	INTRON	MARCHF5	ENSG00000198060.10	ENST00000358935.3:ENST00000467521.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	55	2	2.31726	2.7817800000000004	3.2463	0.015077	0.00262374	0.0994339	0.0470772
chr12	111988663	111988763	5414317	0	-	0.6	(0.57,1]	chr12	517083	95	INTRON	INTRON	TMEM116	ENSG00000198270.13	ENST00000550831.7:ENST00000552374.7:ENST00000355445.7:ENST00000547878.6:ENST00000549537.6:ENST00000552801.6:ENST00000548283.6:ENST00000550800.6:ENST00000550037.5:ENST00000551297.6:ENST00000550020.6:ENST00000546537.6:ENST00000549425.5:ENST00000552839.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	23	2	2.53383	2.7817499999999997	3.02967	0.02547	0.00471306	0.12011	0.0631419
chr16	16501218	16501318	6310874	0	+	0.59	(0.57,1]	chr16	604098	12	INTRON	INTRON	ENSG00000260126	ENSG00000260126.2	ENST00000567465.2	lncRNA	lncRNA	lncRNA	lncRNA	9	86	2	2.45016	2.7817499999999997	3.11334	0.00107789	4.93927e-6	0.0300133	0.00163836
chr7	105861692	105861792	3607828	0	-	0.59	(0.57,1]	chr7	336411	726	INTRON	INTRON	ATXN7L1	ENSG00000146776.15	ENST00000419735.8:ENST00000318724.8:ENST00000478915.1:ENST00000481880.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	23	2	2.53383	2.7817499999999997	3.02967	0.02547	0.00471306	0.12011	0.0631419
chr7	128625596	128625696	3408313	0	+	0.58	(0.57,1]	chr7	318407	4	SS3_PROX	SS3_PROX:INTRON	ENSG00000242588	ENSG00000242588.6	ENST00000605862.5	lncRNA	lncRNA	lncRNA	lncRNA	2	23	2	2.53383	2.7817499999999997	3.02967	0.02547	0.00471306	0.12011	0.0631419
chr6	89666022	89666121	3160393	0	-	0.393939	(0.378,0.408]	chr6	294443	10	INTRON	INTRON	MDN1	ENSG00000112159.12	ENST00000369393.8:ENST00000629399.2	protein_coding	protein_coding	protein_coding	protein_coding	4	72	2	1.53052	2.78173	4.03294	0.0744544	6.52685e-5	0.192012	0.00669119
chr1	220041266	220041365	639141	0	-	0.464646	(0.44,0.476]	chr1	75333	6	INTRON	INTRON	EPRS1	ENSG00000136628.18	ENST00000366923.8:ENST00000609181.5:ENST00000477030.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	66	2	2.38763	2.781675	3.17572	0.00427037	0.00394089	0.0573912	0.0573041
chr3	44800949	44801049	1412627	0	+	0.37	(0.35,0.378]	chr3	148217	1	SS3_PROX	SS3_PROX:INTRON	KIF15	ENSG00000163808.17	ENST00000438321.5:ENST00000326047.9:ENST00000481166.6:ENST00000425755.5:ENST00000493134.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	45	2	2.39939	2.78155	3.16371	0.0458078	0.00383956	0.149888	0.0562562
chr8	128025909	128026009	3862393	0	+	0.45	(0.44,0.476]	chr8	355521	88	INTRON	INTRON	PVT1	ENSG00000249859.13	ENST00000667305.1:ENST00000690350.1:ENST00000653522.1:ENST00000661830.1:ENST00000657289.1:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000657211.1:ENST00000653845.1:ENST00000651587.1:ENST00000692980.1:ENST00000654324.1:ENST00000657693.1:ENST00000666080.1:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000662410.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000657356.1:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000667714.1:ENST00000654105.1:ENST00000664995.1:ENST00000670714.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000668123.1:ENST00000666776.1:ENST00000659912.1:ENST00000670532.1:ENST00000523068.2:ENST00000671088.1:ENST00000663461.1:ENST00000513868.6:ENST00000692433.1:ENST00000523190.7:ENST00000685606.1:ENST00000690788.1:ENST00000685634.1:ENST00000653990.1:ENST00000655783.1:ENST00000656411.1:ENST00000664742.1:ENST00000655099.1:ENST00000662709.1:ENST00000512617.7:ENST00000660122.1:ENST00000666452.1:ENST00000659666.1:ENST00000659892.1:ENST00000521600.5:ENST00000522875.5:ENST00000653497.1:ENST00000668098.1:ENST00000659106.1:ENST00000666147.1:ENST00000658350.1:ENST00000656999.1:ENST00000664610.1:ENST00000671092.1:ENST00000653853.1	lncRNA	lncRNA	lncRNA	lncRNA	3	56	2	2.21079	2.78153	3.35227	0.0194581	0.0022005699999999998	0.119831	0.0417893
chr7	75517917	75518017	3559049	0	-	0.3	(0.28,0.32]	chr7	331602	13	INTRON	INTRON	PMS2P3	ENSG00000127957.19	ENST00000693762.1:ENST00000394921.8:ENST00000430602.5:ENST00000418756.5:ENST00000437568.6:ENST00000533167.5:ENST00000691440.1:ENST00000422064.1:ENST00000438326.2	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript	3	70	2	2.05458	2.78147	3.50836	0.0381508	0.00117393	0.141764	0.0316446
chr19	55667709	55667808	7101661	0	+	0.525253	(0.515,0.57]	chr19	712540	36	INTRON	INTRON	U2AF2	ENSG00000063244.13	ENST00000450554.6:ENST00000308924.9:ENST00000592874.1:ENST00000590551.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	77	2	2.64171	2.78143	2.92115	0.00130576	0.00110258	0.0331539	0.03038
chr1	45585590	45585689	93213	0	+	0.363636	(0.35,0.378]	chr1	12558	10	INTRON	INTRON	NASP	ENSG00000132780.17	ENST00000437901.6:ENST00000537798.5:ENST00000437362.6:ENST00000350030.8:ENST00000464190.6:ENST00000527359.5:ENST00000528084.5:ENST00000453748.5:ENST00000525515.5:ENST00000527470.5:ENST00000529333.5:ENST00000531532.5:ENST00000530840.5:ENST00000528238.5:ENST00000534101.1:ENST00000470768.5:ENST00000372052.8:ENST00000351223.7:ENST00000629893.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	230	2	1.9392	2.78142	3.62364	0.0126486	1.62144e-6	0.0982897	8.48005e-4
chr2	147996254	147996353	1242532	0	-	0.373737	(0.35,0.378]	chr2	131884	138	INTRON	INTRON	ORC4	ENSG00000115947.14	ENST00000392857.10:ENST00000264169.6:ENST00000536575.5:ENST00000535373.5:ENST00000540442.5:ENST00000461711.5:ENST00000490200.5:ENST00000416719.5:ENST00000457954.5:ENST00000440042.1:ENST00000495601.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	46	2	2.24535	2.781355	3.31736	0.0647516	0.00211072	0.179192	0.0425419
chr8	101203131	101203231	4006263	0	-	0.29	(0.28,0.32]	chr8	366737	9	UTR5	UTR5:EXON_MRNA:INTRON	ZNF706	ENSG00000120963.12	ENST00000520984.5:ENST00000311212.9:ENST00000519744.5:ENST00000517844.5:ENST00000520347.5:ENST00000519882.5:ENST00000521272.5:ENST00000518336.5:ENST00000523146.1:ENST00000519916.1:ENST00000523922.1:ENST00000520454.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	15	309	2	2.50247	2.7813499999999998	3.06023	1.16999e-4	8.77174e-5	0.00929802	0.00841867
chr17	82459174	82459274	6692266	0	+	0.7	(0.57,1]	chr17	654542	1	SS3_ADJ	SS3_ADJ:SS5_ADJ:SS3_PROX:SS5_PROX:INTRON	NARF	ENSG00000141562.19	ENST00000579198.5:ENST00000390006.8:ENST00000583181.5:ENST00000584192.5:ENST00000580296.5:ENST00000345415.11:ENST00000581202.5:ENST00000374611.9:ENST00000582585.1:ENST00000457415.7:ENST00000581795.5:ENST00000584411.5:ENST00000577812.5:ENST00000581743.5:ENST00000577432.5:ENST00000582907.5:ENST00000309794.16:ENST00000578082.5:ENST00000580748.1:ENST00000577410.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	23	2	2.66801	2.78132	2.89463	0.0169968	0.00788262	0.110899	0.076155
chr19	47111947	47112047	7196096	0	-	0.72	(0.57,1]	chr19	729137	4	SS5_PROX	SS5_PROX:INTRON	ZC3H4	ENSG00000130749.10	ENST00000253048.10:ENST00000594019.5:ENST00000597069.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	23	2	2.66801	2.78132	2.89463	0.0169968	0.00788262	0.110899	0.076155
chr20	57392416	57392492	7288776	0	+	0.578947	(0.57,1]	chr20	741592	1	UTR3	UTR3:UTR5:EXON_MRNA:SS3_PROX:INTRON	RBM38	ENSG00000132819.17	ENST00000356208.10:ENST00000440234.6:ENST00000342690.4:ENST00000344785.10:ENST00000371219.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	23	2	2.66801	2.78132	2.89463	0.0169968	0.00788262	0.110899	0.076155
chr5	54005611	54005711	2617860	0	-	0.55	(0.515,0.57]	chr5	248835	936	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	91	2	2.73346	2.78131	2.82916	8.38802e-4	4.25151e-4	0.0266487	0.018441
chr17	62003401	62003500	6810250	0	-	0.484848	(0.476,0.515]	chr17	672911	77	INTRON	INTRON	MED13	ENSG00000108510.10	ENST00000397786.7	protein_coding	protein_coding	protein_coding	protein_coding	7	121	2	2.43821	2.781245	3.12428	0.00177508	9.82343e-5	0.0378678	0.0083372
chr16	89417488	89417586	6542865	0	-	0.581633	(0.57,1]	chr16	634260	46	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000647238.1:ENST00000644045.1:ENST00000643147.1:ENST00000644139.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	40	2	2.42282	2.7811250000000003	3.13943	0.00879576	3.01503e-4	0.0790073	0.0155054
chrX	74255208	74255307	7841228	0	-	0.383838	(0.378,0.408]	chrX	799719	69	INTRON	INTRON	FTX	ENSG00000230590.12	ENST00000603672.5:ENST00000430772.6:ENST00000602776.6:ENST00000638681.1:ENST00000652319.1:ENST00000661133.1:ENST00000652071.1:ENST00000602812.6:ENST00000651703.1:ENST00000653018.1:ENST00000658448.1:ENST00000662240.1:ENST00000652527.1:ENST00000651451.1:ENST00000657611.1:ENST00000660481.1:ENST00000659574.1:ENST00000661084.1:ENST00000662494.1:ENST00000670936.1:ENST00000602420.6:ENST00000658203.1:ENST00000638985.1:ENST00000691187.1:ENST00000603037.2:ENST00000687056.1:ENST00000654870.2:ENST00000652540.1:ENST00000652331.2:ENST00000652013.1:ENST00000669263.1:ENST00000657070.1:ENST00000665069.1:ENST00000651936.1:ENST00000652496.1:ENST00000653874.2:ENST00000661335.1:ENST00000664123.1:ENST00000658439.1:ENST00000666535.1:ENST00000652970.1:ENST00000423992.3:ENST00000665313.2:ENST00000651140.1:ENST00000660100.1:ENST00000693483.1:ENST00000656041.1:ENST00000657327.1:ENST00000664343.1:ENST00000656977.1:ENST00000671343.1:ENST00000659407.1:ENST00000671067.1:ENST00000660829.1:ENST00000671385.1	lncRNA	lncRNA	lncRNA	lncRNA	6	106	2	2.69756	2.7811000000000003	2.86464	0.00215581	3.80456e-4	0.0417866	0.0176313
chr9	131133309	131133409	4215701	0	+	0.48	(0.476,0.515]	chr9	386535	1	SS5_PROX	SS5_PROX:INTRON	NUP214	ENSG00000126883.19	ENST00000695497.1:ENST00000695498.1:ENST00000695496.1:ENST00000695495.1:ENST00000695494.1:ENST00000695493.1:ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000525561.2:ENST00000651022.1:ENST00000695499.1:ENST00000530843.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	121	2	2.64763	2.78109	2.91455	4.86633e-4	4.32026e-4	0.0199652	0.0190829
chr12	71612744	71612834	5363040	0	-	0.377778	(0.35,0.378]	chr12	511888	5	INTRON	INTRON	ZFC3H1	ENSG00000133858.17	ENST00000378743.9:ENST00000552994.5:ENST00000551487.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	45	2	2.72498	2.781035	2.83709	0.0168499	0.01435	0.11068	0.0966737
chr14	64506918	64507016	5751535	0	+	0.377551	(0.35,0.378]	chr14	546351	16	INTRON	INTRON	ZBTB1	ENSG00000126804.14	ENST00000553583.1:ENST00000556965.1:ENST00000554015.5:ENST00000358738.3:ENST00000555321.1:ENST00000683701.1	protein_coding	protein_coding	protein_coding	protein_coding	2	45	2	2.72498	2.781035	2.83709	0.0168499	0.01435	0.11068	0.0966737
chr9	123250952	123251052	4340305	0	-	0.36	(0.35,0.378]	chr9	398963	136	INTRON	INTRON	STRBP	ENSG00000165209.19	ENST00000348403.10:ENST00000360998.3:ENST00000407982.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	45	2	2.72498	2.781035	2.83709	0.0168499	0.01435	0.11068	0.0966737
chr3	45740727	45740825	1417586	0	+	0.326531	(0.32,0.35]	chr3	148764	7	INTRON	INTRON	SACM1L	ENSG00000211456.13	ENST00000455997.5:ENST00000418611.5:ENST00000672477.1:ENST00000441228.5:ENST00000389061.10:ENST00000672858.2:ENST00000464102.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	35	2	1.61669	2.78099	3.94529	0.0693433	0.0578816	0.188651	0.184298
chr7	136107097	136107196	3431323	0	+	0.323232	(0.32,0.35]	chr7	319905	137	INTRON	INTRON	ENSG00000232053	ENSG00000232053.7	ENST00000657456.1:ENST00000668062.1:ENST00000668668.1:ENST00000445293.6:ENST00000659747.1:ENST00000668896.1:ENST00000435996.1	lncRNA	lncRNA	lncRNA	lncRNA	3	35	2	1.61669	2.78099	3.94529	0.0693433	0.0578816	0.188651	0.184298
chr9	97509980	97510080	4171671	0	+	0.35	(0.32,0.35]	chr9	380069	78	INTRON	INTRON	TMOD1	ENSG00000136842.14	ENST00000395211.6:ENST00000259365.9	protein_coding	protein_coding	protein_coding	protein_coding	2	48	2	2.37794	2.78093	3.18392	0.0498601	0.00379806	0.156383	0.0562562
chr1	26707030	26707129	51281	0	+	0.525253	(0.515,0.57]	chr1	6542	91	INTRON	INTRON	ARID1A	ENSG00000117713.21	ENST00000430799.7:ENST00000324856.13:ENST00000637465.1:ENST00000457599.6	protein_coding	protein_coding	protein_coding	protein_coding	7	104	2	2.38208	2.78083	3.17958	0.00191752	5.55863e-5	0.0395751	0.00610109
chr18	36140374	36140461	6891530	0	+	0.574713	(0.57,1]	chr18	682987	4	INTRON	INTRON	ELP2	ENSG00000134759.14	ENST00000543127.5:ENST00000544267.5:ENST00000351393.10:ENST00000545632.5:ENST00000442325.6:ENST00000358232.11:ENST00000423854.6:ENST00000539560.5:ENST00000542430.5:ENST00000350494.10:ENST00000542824.5:ENST00000540799.1:ENST00000543439.5:ENST00000540730.5:ENST00000540323.5:ENST00000536373.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	30	2	2.33295	2.780755	3.22856	0.0122896	0.00205928	0.091087	0.0420839
chr1	62439198	62439298	131252	0	+	0.56	(0.515,0.57]	chr1	14890	14	INTRON	INTRON	USP1	ENSG00000162607.13	ENST00000452143.5:ENST00000442679.5:ENST00000371146.5:ENST00000339950.5	protein_coding	protein_coding	protein_coding	protein_coding	2	36	2	2.65834	2.780725	2.90311	0.0187418	0.0094233	0.117523	0.0817766
chr2	241658409	241658508	1055686	0	+	0.555556	(0.515,0.57]	chr2	112516	27	INTRON	INTRON	ATG4B	ENSG00000168397.17	ENST00000405546.7:ENST00000402096.5:ENST00000494465.5:ENST00000483778.5:ENST00000404914.8:ENST00000468018.5:ENST00000482507.5:ENST00000493618.5:ENST00000425239.5:ENST00000400771.7:ENST00000430617.6:ENST00000344376.9:ENST00000429899.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	36	2	2.65834	2.780725	2.90311	0.0187418	0.0094233	0.117523	0.0817766
chr5	1593584	1593684	2565935	0	-	0.54	(0.515,0.57]	chr5	245795	3	SS3_PROX	SS3_PROX:INTRON	SDHAP3	ENSG00000185986.13	ENST00000652578.1:ENST00000684972.1:ENST00000690867.1:ENST00000689786.1:ENST00000693074.1:ENST00000689567.1:ENST00000691787.1:ENST00000436493.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	2	36	2	2.65834	2.780725	2.90311	0.0187418	0.0094233	0.117523	0.0817766
chr9	128272487	128272586	4358194	0	-	0.323232	(0.32,0.35]	chr9	400430	23	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	GOLGA2	ENSG00000167110.19	ENST00000421699.8:ENST00000611957.5:ENST00000693185.1:ENST00000686291.1:ENST00000687179.1:ENST00000458730.3:ENST00000693047.1:ENST00000686884.1:ENST00000693180.1:ENST00000691040.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	80	2	1.55682	2.780725	4.00463	0.0724487	9.86358e-5	0.188101	0.00835539
chr13	45340535	45340623	5585188	0	-	0.613636	(0.57,1]	chr13	533749	5	EXON_MRNA	EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TPT1	ENSG00000133112.17	ENST00000616577.4:ENST00000530705.6:ENST00000379056.5:ENST00000490277.1:ENST00000379060.8:ENST00000379055.5:ENST00000309246.9:ENST00000527226.2:ENST00000442760.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	40	2	2.56996	2.780715	2.99147	0.00499145	6.75142e-4	0.0646039	0.0237705
chr3	52691629	52691729	1429249	0	+	0.27	[0,0.28]	chr3	151005	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	GNL3	ENSG00000163938.17	ENST00000394799.6:ENST00000418458.6:ENST00000496254.5:ENST00000484022.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	95	2	2.34586	2.780645	3.21543	0.00631808	0.00629013	0.0722266	0.0687434
chr12	24878129	24878229	5297195	0	-	0.32	(0.28,0.32]	chr12	503854	2	SS5_PROX	SS5_PROX:INTRON	BCAT1	ENSG00000060982.15	ENST00000261192.12:ENST00000538118.5:ENST00000342945.9:ENST00000539282.5:ENST00000539780.5:ENST00000544418.1:ENST00000612790.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:processed_transcript	4	94	2	2.47203	2.780565	3.0891	0.0114089	7.51507e-4	0.0886611	0.0251578
chr1	92840851	92840947	162524	0	+	0.28125	(0.28,0.32]	chr1	17551	1	SS5_PROX	SS5_PROX:INTRON	RPL5	ENSG00000122406.14	ENST00000645300.1:ENST00000370321.8:ENST00000645119.1:ENST00000497519.1:ENST00000644549.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	94	2	2.71415	2.78043	2.84671	0.005045	0.00216662	0.0621586	0.0434015
chr1	29163302	29163401	410254	0	-	0.323232	(0.32,0.35]	chr1	49403	24	INTRON	INTRON	SRSF4	ENSG00000116350.18	ENST00000373795.7:ENST00000691479.1:ENST00000634348.1:ENST00000466448.4:ENST00000605204.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	48	2	2.71269	2.780405	2.84812	0.0181461	0.0147575	0.114853	0.0983813
chr8	43067476	43067574	3745962	0	+	0.336735	(0.32,0.35]	chr8	348528	29	INTRON	INTRON	FNTA	ENSG00000168522.13	ENST00000533559.5:ENST00000526755.5:ENST00000302279.8:ENST00000527153.5:ENST00000533383.5:ENST00000533998.5:ENST00000524546.5:ENST00000531266.5:ENST00000533368.1:ENST00000525699.5:ENST00000529687.5:ENST00000533336.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	48	2	2.71269	2.780405	2.84812	0.0181461	0.0147575	0.114853	0.0983813
chr7	152839669	152839769	3451328	0	+	0.49	(0.476,0.515]	chr7	322567	142	INTRON	INTRON	ACTR3B	ENSG00000133627.18	ENST00000377776.7:ENST00000256001.13:ENST00000397282.2:ENST00000479402.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	11	188	2	2.71166	2.780385	2.84911	1.35064e-4	6.96651e-5	0.010622	0.00691946
chr3	197954299	197954375	1598776	0	+	0.368421	(0.35,0.378]	chr3	165719	3	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	RPL35A	ENSG00000182899.17	ENST00000647248.2:ENST00000448864.6:ENST00000485439.5:ENST00000642387.1:ENST00000429437.5:ENST00000439255.1:ENST00000474640.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	117	2	2.75631	2.7801	2.80389	0.00113582	6.14024e-4	0.0307499	0.0223951
chr4	2648030	2648130	1913640	0	+	0.46	(0.44,0.476]	chr4	192017	8	INTRON	INTRON	FAM193A	ENSG00000125386.16	ENST00000637812.2:ENST00000324666.9:ENST00000382839.7:ENST00000512465.5:ENST00000545951.5:ENST00000502458.5:ENST00000513898.5:ENST00000505311.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	41	2	2.5364	2.78003	3.02366	0.0309324	0.00603307	0.13151	0.0700813
chr7	45002460	45002559	3315933	0	+	0.474747	(0.44,0.476]	chr7	308173	17	INTRON	INTRON	CCM2	ENSG00000136280.17	ENST00000461377.5:ENST00000544363.5:ENST00000541586.5:ENST00000478582.5:ENST00000258781.11:ENST00000488727.5:ENST00000648329.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	41	2	2.5364	2.78003	3.02366	0.0309324	0.00603307	0.13151	0.0700813
chr7	139381542	139381642	3437812	0	+	0.45	(0.44,0.476]	chr7	320340	50	INTRON	INTRON	LUC7L2:FMC1-LUC7L2	ENSG00000146963.18:ENSG00000269955.2	ENST00000541170.7:ENST00000541515.3:ENST00000608368.5:ENST00000619796.4:ENST00000354926.9:ENST00000456182.5:ENST00000263545.7:ENST00000463912.5:ENST00000498518.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	41	2	2.5364	2.78003	3.02366	0.0309324	0.00603307	0.13151	0.0700813
chr6	28368076	28368176	2840215	0	+	0.4	(0.378,0.408]	chr6	266704	19	UTR3	UTR3:EXON_MRNA	ZKSCAN3	ENSG00000189298.14	ENST00000252211.7:ENST00000377255.3	protein_coding	protein_coding	protein_coding	protein_coding	3	57	2	2.65815	2.779885	2.90162	0.0113157	0.00391167	0.0886121	0.0569957
chr10	87107981	87108081	4481372	0	+	0.45	(0.44,0.476]	chr10	412411	106	INTRON	INTRON	SHLD2	ENSG00000122376.12	ENST00000437629.6:ENST00000298784.5:ENST00000298786.5	protein_coding	protein_coding	protein_coding	protein_coding	2	41	2	2.74063	2.779795	2.81896	0.0176095	0.0120766	0.105143	0.0962311
chr14	63504527	63504627	5907516	0	-	0.46	(0.44,0.476]	chr14	561132	503	INTRON	INTRON	PPP2R5E	ENSG00000154001.14	ENST00000337537.8:ENST00000422769.6:ENST00000555899.1:ENST00000556484.5:ENST00000553266.5:ENST00000556878.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	41	2	2.74063	2.779795	2.81896	0.0176095	0.0120766	0.105143	0.0962311
chr5	6736809	6736909	2316069	0	+	0.46	(0.44,0.476]	chr5	224267	213	INTRON	INTRON	TENT4A	ENSG00000112941.14	ENST00000230859.8:ENST00000515721.1:ENST00000631941.2	protein_coding	protein_coding	protein_coding	protein_coding	2	41	2	2.74063	2.779795	2.81896	0.0176095	0.0120766	0.105143	0.0962311
chr11	70417123	70417223	4821810	0	+	0.51	(0.476,0.515]	chr11	449632	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	CTTN	ENSG00000085733.16	ENST00000346329.7:ENST00000301843.13:ENST00000376561.7:ENST00000415461.2:ENST00000532334.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	84	2	2.10246	2.7797850000000004	3.45711	0.00381269	0.00140905	0.0562562	0.0340865
chr20	50109709	50109807	7353926	0	-	0.459184	(0.44,0.476]	chr20	749890	2	INTRON	INTRON	UBE2V1	ENSG00000244687.13	ENST00000340309.7:ENST00000371677.7:ENST00000415862.6:ENST00000557021.5:ENST00000617119.4:ENST00000625172.3:ENST00000396059.7:ENST00000371674.8:ENST00000371657.9:ENST00000483534.5:ENST00000492371.6:ENST00000486653.5:ENST00000490555.1:ENST00000493090.5:ENST00000467839.5:ENST00000472923.5:ENST00000432266.5:ENST00000470565.5:ENST00000490289.5:ENST00000462217.5:ENST00000461960.5:ENST00000473860.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	56	2	2.47339	2.77965	3.08591	0.0090196	0.00481262	0.080367	0.0638089
chr22	41210133	41210233	7522465	0	+	0.39	(0.378,0.408]	chr22	768716	2	SS5_PROX	SS5_PROX:INTRON	L3MBTL2	ENSG00000100395.15	ENST00000481902.5:ENST00000489136.5:ENST00000466589.5:ENST00000216237.10:ENST00000479978.5:ENST00000452106.5:ENST00000450939.1:ENST00000449635.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	57	2	2.41037	2.779645	3.14892	0.0100185	0.00499984	0.0880217	0.0617433
chr22	19112046	19112145	7551911	0	-	0.515152	(0.476,0.515]	chr22	771903	222	INTRON	INTRON	DGCR2	ENSG00000070413.20	ENST00000537045.5:ENST00000545799.5:ENST00000263196.12:ENST00000389262.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	84	2	1.69413	2.779575	3.86502	0.0200655	2.2858e-4	0.121043	0.0138641
chr14	31004257	31004357	5857652	0	-	0.45	(0.44,0.476]	chr14	556508	399	INTRON	INTRON	STRN3	ENSG00000196792.12	ENST00000355683.9:ENST00000357479.10:ENST00000555358.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	17	246	2	2.28157	2.77955	3.27753	1.28561e-4	2.13621e-5	0.00976959	0.00377331
chr6	13673913	13674012	3058846	0	-	0.454545	(0.44,0.476]	chr6	284542	147	INTRON	INTRON	RANBP9	ENSG00000010017.13	ENST00000011619.6	protein_coding	protein_coding	protein_coding	protein_coding	4	37	2	1.54868	2.77953	4.01038	0.0457575	0.0433743	0.164677	0.148082
chr1	765072	765159	357621	0	-	0.425287	(0.408,0.44]	chr1	41185	5	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ENSG00000230021:ENSG00000228327	ENSG00000230021.10:ENSG00000228327.4	ENST00000634337.2:ENST00000635509.2:ENST00000506640.2:ENST00000428504.2	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene:transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	9	163	2	2.66271	2.7795	2.89629	4.42751e-4	9.31636e-5	0.0190383	0.00857086
chr12	101808530	101808629	5398759	0	-	0.363636	(0.35,0.378]	chr12	514984	114	INTRON	INTRON	GNPTAB	ENSG00000111670.16	ENST00000299314.12:ENST00000549940.5:ENST00000647144.1:ENST00000392919.4:ENST00000549165.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	33	2	1.58862	2.77947	3.97032	0.0615516	0.0578667	0.193423	0.167723
chr6	35876436	35876536	3088370	0	-	0.49	(0.476,0.515]	chr6	288860	17	INTRON	INTRON	SRPK1	ENSG00000096063.16	ENST00000373825.7:ENST00000423325.6:ENST00000346162.10:ENST00000361690.7:ENST00000510290.5:ENST00000373821.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	89	2	2.11109	2.779465	3.44784	0.00438713	0.00113238	0.0585064	0.0308465
chr17	78824181	78824280	6846231	0	-	0.434343	(0.408,0.44]	chr17	677447	6	INTRON	INTRON	USP36	ENSG00000055483.20	ENST00000589225.5:ENST00000592231.6:ENST00000449938.7:ENST00000542802.7:ENST00000693020.1:ENST00000312010.10:ENST00000588086.6:ENST00000586066.3:ENST00000589424.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	76	2	2.22819	2.77943	3.33067	0.00373083	0.0024459	0.0561984	0.0445752
chr11	3757794	3757894	4894765	0	-	0.27	[0,0.28]	chr11	458876	40	INTRON	INTRON	NUP98	ENSG00000110713.17	ENST00000359171.8:ENST00000324932.12:ENST00000650171.1:ENST00000355260.7:ENST00000397004.8:ENST00000397007.8:ENST00000527104.5:ENST00000529379.1:ENST00000397013.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	149	2	2.3319	2.7794	3.2269	0.00345409	9.34523e-4	0.0539802	0.0280498
chr1	212806540	212806639	309727	0	+	0.484848	(0.476,0.515]	chr1	35758	15	INTRON	INTRON	TATDN3	ENSG00000203705.11	ENST00000532324.5:ENST00000526641.5:ENST00000366973.8:ENST00000531963.5:ENST00000366974.9:ENST00000526997.5:ENST00000533650.5:ENST00000525574.5:ENST00000525569.5:ENST00000527693.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	41	2	2.73205	2.7793900000000002	2.82673	0.0159328	0.0134403	0.109464	0.0946278
chr11	3881515	3881615	4723722	0	+	0.51	(0.476,0.515]	chr11	437130	129	INTRON	INTRON	STIM1	ENSG00000167323.12	ENST00000525403.5:ENST00000526596.2:ENST00000300737.8:ENST00000616714.4:ENST00000527651.5:ENST00000532610.5:ENST00000532919.5:ENST00000530554.5	protein_coding	protein_coding	protein_coding	protein_coding	2	41	2	2.73205	2.7793900000000002	2.82673	0.0159328	0.0134403	0.109464	0.0946278
chr20	3913932	3914031	7227150	0	+	0.494949	(0.476,0.515]	chr20	734510	9	INTRON	INTRON	PANK2	ENSG00000125779.24	ENST00000497424.5:ENST00000316562.9:ENST00000495692.5:ENST00000610179.7:ENST00000643504.2:ENST00000336066.8:ENST00000646394.1:ENST00000621507.1:ENST00000464452.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	41	2	2.73205	2.7793900000000002	2.82673	0.0159328	0.0134403	0.109464	0.0946278
chr20	32507784	32507884	7326135	0	-	0.48	(0.476,0.515]	chr20	746100	206	INTRON	INTRON	NOL4L	ENSG00000197183.15	ENST00000621426.7:ENST00000375678.7:ENST00000375677.5:ENST00000201961.6	protein_coding	protein_coding	protein_coding	protein_coding	2	41	2	2.73205	2.7793900000000002	2.82673	0.0159328	0.0134403	0.109464	0.0946278
chr3	138832996	138833096	1831483	0	-	0.3	(0.28,0.32]	chr3	184062	361	INTRON	INTRON	PIK3CB	ENSG00000051382.9	ENST00000674063.1:ENST00000477593.5:ENST00000462898.5:ENST00000483968.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	136	2	2.6285	2.7793799999999997	2.93026	0.00255625	4.1414e-4	0.0449775	0.0181789
chr18	26087100	26087200	6959707	0	-	0.35	(0.32,0.35]	chr18	688509	2	SS5_PROX	SS5_PROX:INTRON	SS18	ENSG00000141380.14	ENST00000415083.7:ENST00000542420.6:ENST00000579640.5:ENST00000269138.9:ENST00000269137.11:ENST00000585121.5:ENST00000539244.6:ENST00000585241.5:ENST00000578954.5:ENST00000579061.5:ENST00000577636.5:ENST00000584083.5:ENST00000578700.5:ENST00000582792.5:ENST00000581021.5:ENST00000577572.5:ENST00000582448.5:ENST00000581570.5:ENST00000577751.5:ENST00000580751.5:ENST00000580642.2:ENST00000578595.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	64	2	2.71053	2.779325	2.84812	0.0147575	0.00346747	0.0983813	0.0539802
chr12	123154911	123155011	5443251	0	-	0.44	(0.408,0.44]	chr12	520744	8	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	MPHOSPH9	ENSG00000051825.15	ENST00000544217.1:ENST00000541603.6:ENST00000606320.6:ENST00000541076.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	67	2	1.87977	2.779315	3.67886	0.0282738	3.86173e-4	0.125825	0.017761
chr15	60378064	60378163	6195128	0	-	0.434343	(0.408,0.44]	chr15	590323	30	INTRON	INTRON	ANXA2	ENSG00000182718.18	ENST00000396024.7:ENST00000559818.6:ENST00000679109.1:ENST00000676687.1:ENST00000558169.6:ENST00000557906.6:ENST00000558558.6:ENST00000559113.6:ENST00000559780.6:ENST00000559956.6:ENST00000560468.6:ENST00000678870.1:ENST00000678061.1:ENST00000678450.1:ENST00000677968.1:ENST00000451270.7:ENST00000558985.6:ENST00000678796.1:ENST00000559647.2:ENST00000332680.8:ENST00000560014.5:ENST00000504475.6:ENST00000421017.6:ENST00000560466.5:ENST00000558132.5:ENST00000561022.5:ENST00000560367.6:ENST00000558503.6:ENST00000558998.5:ENST00000559559.5:ENST00000560165.5:ENST00000560389.5:ENST00000559725.5:ENST00000559350.5:ENST00000558986.5:ENST00000677258.1:ENST00000559467.5:ENST00000561445.5:ENST00000557937.5:ENST00000557904.5:ENST00000559370.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	77	2	1.62122	2.7792700000000004	3.93732	0.0394247	1.0367e-4	0.143072	0.00863144
chr2	111855329	111855427	1214580	0	-	0.397959	(0.378,0.408]	chr2	129170	41	INTRON	INTRON	ANAPC1	ENSG00000153107.13	ENST00000427997.5:ENST00000341068.8	protein_coding	protein_coding	protein_coding	protein_coding	2	43	2	2.71183	2.77923	2.84663	0.0170789	0.0133954	0.110899	0.0946278
chr8	90362766	90362866	3793723	0	+	0.54	(0.515,0.57]	chr8	351792	107	INTRON	INTRON	LINC00534	ENSG00000253394.7	ENST00000662145.1:ENST00000655523.1:ENST00000517400.6:ENST00000658299.1:ENST00000663329.1:ENST00000658342.1:ENST00000523283.6:ENST00000655219.1:ENST00000662692.1:ENST00000667296.1:ENST00000667565.1:ENST00000523406.2:ENST00000659030.1:ENST00000653734.1:ENST00000654785.1:ENST00000524361.5:ENST00000668745.1:ENST00000661519.1:ENST00000671657.1:ENST00000655123.1:ENST00000663098.1:ENST00000670903.1:ENST00000654946.1	lncRNA	lncRNA	lncRNA	lncRNA	17	209	2	1.81693	2.77922	3.74151	0.00213879	2.33997e-7	0.0417866	2.3186e-4
chr15	28244788	28244887	6123265	0	-	0.434343	(0.408,0.44]	chr15	583285	57	INTRON	INTRON	HERC2	ENSG00000128731.18	ENST00000261609.13	protein_coding	protein_coding	protein_coding	protein_coding	3	57	2	2.53313	2.77913	3.02513	0.00739595	0.0059965	0.074277	0.0700606
chr7	127664147	127664247	3402511	0	+	0.53	(0.515,0.57]	chr7	318063	113	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000463020.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	73	2	2.15429	2.7790850000000002	3.40388	0.00272344	0.00142538	0.0481781	0.0340865
chr11	77619187	77619285	4994148	0	-	0.346939	(0.32,0.35]	chr11	471907	1	SS5_PROX	SS5_PROX:INTRON	CLNS1A	ENSG00000074201.9	ENST00000526761.5:ENST00000525428.6:ENST00000525064.5:ENST00000263309.7:ENST00000526009.5:ENST00000532069.5:ENST00000528364.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	64	2	2.35591	2.7790350000000004	3.20216	0.0128129	0.00480708	0.0990564	0.0602209
chr5	131596134	131596234	2718780	0	-	0.36	(0.35,0.378]	chr5	255614	33	INTRON	INTRON	RAPGEF6	ENSG00000158987.22	ENST00000509018.6:ENST00000507093.5:ENST00000296859.10:ENST00000627212.2:ENST00000308008.10:ENST00000515170.5:ENST00000510071.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	60	2	2.72093	2.77901	2.83709	0.01435	0.00314173	0.0966737	0.0514466
chrX	114050445	114050544	7868546	0	-	0.40404	(0.378,0.408]	chrX	801557	76	INTRON	INTRON	XACT	ENSG00000241743.4	ENST00000468762.3:ENST00000649506.1	lncRNA	lncRNA	lncRNA	lncRNA	6	114	2	2.60363	2.77897	2.95431	0.00153353	4.09829e-4	0.0361717	0.0185932
chr15	78897456	78897554	6069806	0	+	0.367347	(0.35,0.378]	chr15	578256	5	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	MORF4L1	ENSG00000185787.15	ENST00000379535.8:ENST00000331268.9:ENST00000426013.7:ENST00000561171.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	206	2	2.59105	2.77889	2.96673	3.59401e-4	3.91095e-5	0.0175545	0.00505936
chr15	92954736	92954836	6104259	0	+	0.49	(0.476,0.515]	chr15	581479	4	SS5_PROX	SS5_PROX:INTRON	CHD2	ENSG00000173575.22	ENST00000626874.2:ENST00000394196.9:ENST00000635856.1:ENST00000625990.3:ENST00000637572.1:ENST00000636881.1:ENST00000628181.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	67	2	2.55884	2.77868	2.99852	0.0077575	0.00186081	0.0757402	0.039946
chr1	8759532	8759632	373203	0	-	0.33	(0.32,0.35]	chr1	43549	58	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000656437.1:ENST00000659924.1	protein_coding	protein_coding	protein_coding	protein_coding	5	88	2	1.9182	2.778585	3.63897	0.0141462	9.34231e-4	0.103512	0.0280484
chr3	33087224	33087324	1651067	0	-	0.44	(0.408,0.44]	chr3	169303	96	INTRON	INTRON	GLB1	ENSG00000170266.16	ENST00000399402.7:ENST00000307363.10:ENST00000307377.12:ENST00000482097.5:ENST00000485698.5:ENST00000498537.5:ENST00000415454.1:ENST00000438227.1:ENST00000440656.1:ENST00000464355.1:ENST00000450835.1:ENST00000436768.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	55	2	2.55103	2.7784899999999997	3.00595	0.00781452	0.00587353	0.0759016	0.0690758
chr3	44494937	44495037	1676731	0	-	0.44	(0.408,0.44]	chr3	171149	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	ZNF852	ENSG00000178917.17	ENST00000650400.1	protein_coding	protein_coding	protein_coding	protein_coding	3	55	2	2.55103	2.7784899999999997	3.00595	0.00781452	0.00587353	0.0759016	0.0690758
chr7	100337027	100337109	3364337	0	+	0.439024	(0.408,0.44]	chr7	314618	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	STAG3L5P:STAG3L5P-PVRIG2P-PILRB	ENSG00000242294.6:ENSG00000272752.6	ENST00000473757.5:ENST00000470714.5:ENST00000310771.8:ENST00000483329.6:ENST00000422479.5:ENST00000414292.5:ENST00000444874.5:ENST00000488972.6	lncRNA	retained_intron	lncRNA:transcribed_unprocessed_pseudogene	retained_intron:lncRNA:processed_transcript	3	55	2	2.55103	2.7784899999999997	3.00595	0.00781452	0.00587353	0.0759016	0.0690758
chr8	38261748	38261847	3735851	0	+	0.323232	(0.32,0.35]	chr8	347166	13	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	DDHD2	ENSG00000085788.14	ENST00000397166.7:ENST00000520272.6:ENST00000517385.5:ENST00000526071.1:ENST00000529872.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	66	2	1.83416	2.77846	3.72276	0.0631198	3.96144e-4	0.176946	0.0178616
chr1	223966044	223966144	643533	0	-	0.47	(0.44,0.476]	chr1	75994	34	INTRON	INTRON	GTF2IP20	ENSG00000272645.4	ENST00000634905.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	5	79	2	1.60176	2.77825	3.95474	0.0389597	1.54083e-4	0.160861	0.0113252
chr1	110366275	110366374	182614	0	+	0.484848	(0.476,0.515]	chr1	20257	99	INTRON	INTRON	LAMTOR5-AS1	ENSG00000224699.10	ENST00000626572.2	lncRNA	lncRNA	lncRNA	lncRNA	4	66	2	1.97402	2.778225	3.58243	0.0206778	6.18479e-4	0.110999	0.0223951
chr1	6879785	6879884	6593	0	+	0.464646	(0.44,0.476]	chr1	1158	50	INTRON	INTRON	CAMTA1	ENSG00000171735.19	ENST00000303635.12:ENST00000476163.5:ENST00000557126.5:ENST00000461311.1:ENST00000482934.1:ENST00000470648.5:ENST00000461580.5:ENST00000467267.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	42	2	2.29842	2.7782150000000003	3.25801	0.0552483	0.00248185	0.165463	0.0460771
chr12	111965759	111965859	5414086	0	-	0.45	(0.44,0.476]	chr12	517074	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	TMEM116	ENSG00000198270.13	ENST00000550831.7:ENST00000552374.7:ENST00000355445.7:ENST00000547878.6:ENST00000549537.6:ENST00000552801.6:ENST00000548283.6:ENST00000550800.6:ENST00000550037.5:ENST00000551297.6:ENST00000550020.6:ENST00000546537.6:ENST00000549425.5:ENST00000552839.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	42	2	2.29842	2.7782150000000003	3.25801	0.0552483	0.00248185	0.165463	0.0460771
chr6	24408644	24408744	2835438	0	+	0.47	(0.44,0.476]	chr6	265740	2	SS5_PROX	SS5_PROX:INTRON	MRS2	ENSG00000124532.15	ENST00000274747.11:ENST00000443868.6:ENST00000378386.8:ENST00000378353.5:ENST00000483634.1:ENST00000446191.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	42	2	2.29842	2.7782150000000003	3.25801	0.0552483	0.00248185	0.165463	0.0460771
chrX	24789535	24789635	7632673	0	+	0.36	(0.35,0.378]	chrX	781731	138	INTRON	INTRON	POLA1	ENSG00000101868.13	ENST00000672178.1:ENST00000379068.8:ENST00000379059.7:ENST00000611764.2:ENST00000480125.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	97	2	2.5337	2.7781599999999997	3.02262	0.0022093	0.00119456	0.0435144	0.0315806
chr8	39103700	39103796	3739385	0	+	0.302083	(0.28,0.32]	chr8	347604	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ADAM9	ENSG00000168615.13	ENST00000678474.1:ENST00000676765.1:ENST00000676936.1:ENST00000677908.1:ENST00000677004.1:ENST00000677165.1:ENST00000481058.2:ENST00000676643.1:ENST00000676669.1:ENST00000679268.1:ENST00000677582.1:ENST00000676617.1:ENST00000677137.1:ENST00000678540.1:ENST00000677359.1:ENST00000678730.1:ENST00000487273.7:ENST00000678253.1:ENST00000676489.1:ENST00000379917.7:ENST00000468065.5:ENST00000481873.7:ENST00000676919.1:ENST00000678863.1:ENST00000484143.2:ENST00000463437.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	108	2	2.22031	2.778135	3.33596	0.00342993	0.0027867	0.0517761	0.0488769
chr10	12163278	12163375	4394288	0	+	0.453608	(0.44,0.476]	chr10	405411	6	INTRON	INTRON	SEC61A2	ENSG00000065665.21	ENST00000379033.7:ENST00000298428.14:ENST00000475268.5:ENST00000495368.1:ENST00000304267.12:ENST00000379020.8:ENST00000419021.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	57	2	1.83899	2.77813	3.71727	0.0589734	3.2089e-4	0.167915	0.0159645
chr17	35596246	35596345	6599624	0	+	0.454545	(0.44,0.476]	chr17	642232	18	INTRON	INTRON	AP2B1	ENSG00000006125.18	ENST00000589774.5:ENST00000616784.4:ENST00000621914.4:ENST00000620039.4:ENST00000616681.4:ENST00000621668.4:ENST00000610402.5:ENST00000612035.4:ENST00000591610.5:ENST00000590538.5:ENST00000614600.4:ENST00000590432.5:ENST00000612116.5:ENST00000618940.4:ENST00000588093.1:ENST00000592167.5:ENST00000593014.3:ENST00000628168.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	57	2	1.83899	2.77813	3.71727	0.0589734	3.2089e-4	0.167915	0.0159645
chr2	86166307	86166407	1170867	0	-	0.39	(0.378,0.408]	chr2	124965	4	SS5_PROX	SS5_PROX:INTRON	IMMT	ENSG00000132305.22	ENST00000449247.6:ENST00000254636.9:ENST00000410111.8:ENST00000442664.6:ENST00000419070.6:ENST00000409051.6:ENST00000474969.5:ENST00000490238.5:ENST00000409258.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	44	2	2.2259	2.77808	3.33026	0.0662381	0.00189824	0.181924	0.0402736
chr21	29540948	29541048	7394791	0	+	0.41	(0.408,0.44]	chr21	753256	407	INTRON	INTRON	BACH1	ENSG00000156273.16	ENST00000422809.5:ENST00000468059.1	protein_coding	protein_coding	protein_coding	protein_coding	4	88	2	2.07919	2.7780500000000004	3.47691	0.0291499	1.1563e-4	0.14147	0.00969484
chr6	36596077	36596168	2854429	0	+	0.516484	(0.515,0.57]	chr6	269770	10	INTRON	INTRON	SRSF3	ENSG00000112081.17	ENST00000613941.4:ENST00000373715.11:ENST00000620242.1:ENST00000339436.11:ENST00000477442.6:ENST00000620941.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	177	2	2.72736	2.778045	2.82873	1.44832e-4	3.15002e-5	0.0104652	0.00468542
chr4	73208891	73208991	2160327	0	-	0.49	(0.476,0.515]	chr4	212794	310	INTRON	INTRON	ANKRD17	ENSG00000132466.20	ENST00000358602.9:ENST00000558247.5:ENST00000330838.10:ENST00000509867.6:ENST00000561029.1:ENST00000559367.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	28	2	1.72558	2.7778799999999997	3.83018	0.0767648	0.0423385	0.196164	0.161744
chr7	128529380	128529479	3635526	0	-	0.494949	(0.476,0.515]	chr7	338010	55	EXON_LNCRNA	EXON_LNCRNA	ENSG00000273270	ENSG00000273270.1	ENST00000608477.1	lncRNA	lncRNA	lncRNA	lncRNA	2	28	2	1.72558	2.7778799999999997	3.83018	0.0767648	0.0423385	0.196164	0.161744
chr2	229831546	229831646	1340749	0	-	0.58	(0.57,1]	chr2	140424	4	SS3_PROX	SS3_PROX:INTRON	TRIP12	ENSG00000153827.14	ENST00000675453.1:ENST00000675903.1:ENST00000283943.9:ENST00000675423.1:ENST00000389044.8:ENST00000389045.7:ENST00000479037.5:ENST00000409677.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	30	2	2.23711	2.77785	3.31859	0.0172108	0.00137292	0.104099	0.0340241
chr12	54281161	54281228	5143373	0	+	0.61194	(0.57,1]	chr12	485530	2	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HNRNPA1	ENSG00000135486.19	ENST00000546500.5:ENST00000677385.1:ENST00000677210.1:ENST00000677375.1:ENST00000677249.1:ENST00000676725.1:ENST00000678418.1:ENST00000550482.2:ENST00000340913.11:ENST00000679101.1:ENST00000547566.5:ENST00000547708.5:ENST00000679228.1:ENST00000547870.2:ENST00000551702.5:ENST00000678365.1:ENST00000330752.12:ENST00000676794.1:ENST00000547276.5:ENST00000678919.1:ENST00000678690.1:ENST00000677220.1:ENST00000678077.1:ENST00000548688.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	94	2	2.3025	2.7778	3.2531	3.81114e-4	5.37406e-6	0.0176557	0.00172277
chr5	69116021	69116117	2379809	0	+	0.354167	(0.35,0.378]	chr5	229099	2	CDS	CDS:EXON_MRNA	SLC30A5	ENSG00000145740.20	ENST00000396591.8:ENST00000507354.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	83	2	1.74826	2.777635	3.80701	0.0279529	2.34133e-4	0.124524	0.0135358
chr8	125300143	125300243	3855575	0	+	0.47	(0.44,0.476]	chr8	355249	1175	INTRON	INTRON	NSMCE2	ENSG00000156831.8	ENST00000517532.5:ENST00000287437.8:ENST00000522563.5:ENST00000517315.1	protein_coding	protein_coding	protein_coding	protein_coding	3	57	2	2.59632	2.77746	2.9586	0.00758318	0.00579248	0.0773151	0.0662959
chr2	99397896	99397991	835444	0	+	0.273684	[0,0.28]	chr2	93772	10	EXON_MRNA	EXON_MRNA:INTRON	EIF5B	ENSG00000158417.11	ENST00000617677.1:ENST00000289371.11:ENST00000494190.1:ENST00000470023.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	81	2	2.45904	2.777455	3.09587	0.0137145	0.00651565	0.0949306	0.0735232
chr17	60186005	60186078	6803773	0	-	0.465753	(0.44,0.476]	chr17	672186	2	SS3_PROX	SS3_PROX:INTRON	USP32	ENSG00000170832.13	ENST00000300896.9:ENST00000592339.5	protein_coding	protein_coding	protein_coding	protein_coding	2	42	2	2.58033	2.7774200000000002	2.97451	0.0247511	0.00853825	0.131869	0.0780043
chr3	49090984	49091084	1692209	0	-	0.47	(0.44,0.476]	chr3	173166	35	INTRON	INTRON	QRICH1	ENSG00000198218.11	ENST00000395443.7:ENST00000357496.6:ENST00000424300.5:ENST00000411682.1:ENST00000450685.5:ENST00000437939.5:ENST00000430979.1	protein_coding	protein_coding	protein_coding	protein_coding	2	42	2	2.58033	2.7774200000000002	2.97451	0.0247511	0.00853825	0.131869	0.0780043
chr18	738623	738717	6939957	0	-	0.43617	(0.408,0.44]	chr18	686468	7	EXON_LNCRNA	EXON_LNCRNA:INTRON	YES1:ENSG00000264635	ENSG00000176105.14:ENSG00000264635.1	ENST00000584307.5:ENST00000314574.5:ENST00000577961.5:ENST00000581712.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	6	88	2	1.9588699999999999	2.777255	3.59564	0.00847845	5.73354e-4	0.0778146	0.0217398
chr9	131401648	131401748	4217045	0	+	0.44	(0.408,0.44]	chr9	386720	70	INTRON	INTRON	PRRC2B	ENSG00000288701.1	ENST00000682525.1:ENST00000684596.1:ENST00000683519.1:ENST00000682501.1	protein_coding	protein_coding	protein_coding	protein_coding	6	84	2	1.85866	2.77719	3.69572	0.0106944	5.37849e-4	0.091856	0.0214775
chr10	831673	831772	4541572	0	-	0.515152	(0.476,0.515]	chr10	419243	3	INTRON	INTRON	LARP4B	ENSG00000107929.16	ENST00000688365.1:ENST00000316157.8:ENST00000690516.1:ENST00000689323.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	74	2	2.68023	2.777145	2.87406	0.00353671	0.00188729	0.0546236	0.0391691
chr2	172580195	172580294	920148	0	+	0.292929	(0.28,0.32]	chr2	101374	90	INTRON	INTRON	PDK1	ENSG00000152256.14	ENST00000392571.6:ENST00000410055.5:ENST00000282077.8:ENST00000466437.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	220	2	2.58132	2.77702	2.97272	0.00152775	3.07879e-5	0.0353936	0.004431
chr8	73794807	73794904	3971414	0	-	0.350515	(0.35,0.378]	chr8	364211	3	INTRON	INTRON	ENSG00000258677:UBE2W	ENSG00000258677.2:ENSG00000104343.21	ENST00000358757.5:ENST00000523278.5:ENST00000602593.6:ENST00000517608.5:ENST00000650817.1:ENST00000422906.6:ENST00000419880.7:ENST00000651945.1:ENST00000519277.5:ENST00000519255.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	60	2	2.14264	2.777015	3.41139	0.0274795	0.00143263	0.123904	0.0347139
chr5	160115806	160115906	2759764	0	-	0.45	(0.44,0.476]	chr5	260442	68	INTRON	INTRON	PWWP2A	ENSG00000170234.13	ENST00000456329.7:ENST00000523662.1:ENST00000307063.9:ENST00000520662.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	154	2	2.44491	2.7769399999999997	3.10897	9.74107e-4	3.23916e-5	0.0284122	0.00453686
chr1	179033662	179033761	265750	0	+	0.373737	(0.35,0.378]	chr1	31018	72	INTRON	INTRON	FAM20B	ENSG00000116199.12	ENST00000440702.5:ENST00000263733.5	protein_coding	protein_coding	protein_coding	protein_coding	3	60	2	2.23651	2.776935	3.31736	0.020879	0.00211072	0.111766	0.0425419
chr2	201013445	201013543	1311305	0	-	0.377551	(0.35,0.378]	chr2	137270	16	INTRON	INTRON	FAM126B	ENSG00000155744.10	ENST00000681958.1:ENST00000418596.7:ENST00000286181.7:ENST00000498780.5:ENST00000452799.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	60	2	2.23651	2.776935	3.31736	0.020879	0.00211072	0.111766	0.0425419
chr16	87737030	87737130	6538380	0	-	0.46	(0.44,0.476]	chr16	633530	60	INTRON	INTRON	KLHDC4	ENSG00000104731.14	ENST00000567298.5:ENST00000270583.10:ENST00000347925.9:ENST00000353170.9:ENST00000316853.10:ENST00000566349.5:ENST00000562155.5:ENST00000622456.4:ENST00000562261.1:ENST00000566661.5:ENST00000567513.1:ENST00000564484.5:ENST00000565328.5:ENST00000569747.5:ENST00000564396.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	101	2	2.61012	2.7769250000000003	2.94373	0.00143431	5.86746e-4	0.0340925	0.0220073
chr3	197263726	197263825	1903162	0	-	0.434343	(0.408,0.44]	chr3	190664	31	INTRON	INTRON	DLG1	ENSG00000075711.21	ENST00000667157.1:ENST00000346964.6:ENST00000663148.1:ENST00000655488.1:ENST00000357674.9:ENST00000671185.1:ENST00000658701.1:ENST00000667104.1:ENST00000661336.1:ENST00000669565.1:ENST00000670455.1:ENST00000656087.1:ENST00000661453.1:ENST00000664564.1:ENST00000660432.1:ENST00000660898.1:ENST00000657381.1:ENST00000659221.1:ENST00000654737.1:ENST00000659716.1:ENST00000664991.1:ENST00000419354.5:ENST00000661440.1:ENST00000667971.1:ENST00000670935.1:ENST00000666007.1:ENST00000661229.1:ENST00000661013.1:ENST00000436682.6:ENST00000662727.1:ENST00000422288.6:ENST00000448528.6:ENST00000656944.1:ENST00000392382.6:ENST00000450955.5:ENST00000419227.5:ENST00000392381.7:ENST00000471733.5:ENST00000419553.6:ENST00000456699.6:ENST00000392380.6:ENST00000485409.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	56	2	2.40661	2.776835	3.14706	0.011475	0.00382411	0.0888882	0.0562562
chr7	128088988	128089088	3406806	0	+	0.42	(0.408,0.44]	chr7	318232	1	SS3_PROX	SS3_PROX:INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000489417.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	113	2	2.23161	2.77678	3.32195	0.00206564	2.54513e-4	0.04217	0.0147895
chr19	45408015	45408113	7190852	0	-	0.428571	(0.408,0.44]	chr19	728083	8	UTR3	UTR3:EXON_MRNA	ERCC1	ENSG00000012061.16	ENST00000423698.6:ENST00000300853.8	protein_coding	protein_coding	protein_coding	protein_coding	8	136	2	2.48237	2.776595	3.07082	5.72623e-4	2.09358e-4	0.0217398	0.0131276
chr22	21801798	21801896	7560726	0	-	0.326531	(0.32,0.35]	chr22	773376	23	INTRON	INTRON	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	6	118	2	2.5542	2.7765899999999997	2.99898	0.00148392	9.3945e-4	0.034977	0.0280187
chr16	53183913	53184013	6352013	0	+	0.43	(0.408,0.44]	chr16	609688	260	INTRON	INTRON	CHD9	ENSG00000177200.18	ENST00000447540.6:ENST00000566029.5:ENST00000615216.4:ENST00000565832.5:ENST00000564845.5:ENST00000398510.7:ENST00000564255.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	55	2	2.44674	2.7765750000000002	3.10641	0.00868283	0.00555646	0.0842798	0.0648867
chr4	87338252	87338348	2198742	0	-	0.4375	(0.408,0.44]	chr4	215740	5	INTRON	INTRON	HSD17B11	ENSG00000198189.11	ENST00000358290.9:ENST00000507518.5:ENST00000512344.5:ENST00000502576.5:ENST00000507286.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	55	2	2.44674	2.7765750000000002	3.10641	0.00868283	0.00555646	0.0842798	0.0648867
chr1	193159449	193159546	284995	0	+	0.525773	(0.515,0.57]	chr1	32812	28	EXON_LNCRNA	EXON_LNCRNA:INTRON	CDC73	ENSG00000134371.14	ENST00000649895.1:ENST00000643006.1:ENST00000367435.5:ENST00000650197.1:ENST00000648071.1:ENST00000635846.1:ENST00000649606.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	37	2	2.23915	2.776515	3.31388	0.0596178	0.00174704	0.16883600000000001	0.0386026
chr18	12651602	12651701	6949229	0	-	0.474747	(0.44,0.476]	chr18	687396	154	INTRON	INTRON	SPIRE1	ENSG00000134278.16	ENST00000409402.9:ENST00000410092.7:ENST00000309836.9:ENST00000453447.6:ENST00000449797.5:ENST00000497844.6:ENST00000462226.1	protein_coding	protein_coding	protein_coding	protein_coding	3	55	2	2.24189	2.776495	3.3111	0.0193405	0.0020006	0.108861	0.0412555
chr7	6394838	6394938	3273227	0	+	0.46	(0.44,0.476]	chr7	304324	29	EXON_MRNA	EXON_MRNA:INTRON	RAC1	ENSG00000136238.19	ENST00000348035.9:ENST00000356142.4:ENST00000696666.1:ENST00000488373.5:ENST00000497741.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	55	2	2.24189	2.776495	3.3111	0.0193405	0.0020006	0.108861	0.0412555
chr6	170551137	170551236	3267658	0	-	0.383838	(0.378,0.408]	chr6	303384	8	INTRON	INTRON	PSMB1	ENSG00000008018.9	ENST00000262193.7	protein_coding	protein_coding	protein_coding	protein_coding	13	198	2	1.92115	2.7764949999999997	3.63184	0.00198794	1.01966e-5	0.0411469	0.00248543
chr4	82832770	82832870	2179487	0	-	0.39	(0.378,0.408]	chr4	214267	14	INTRON	INTRON	SEC31A	ENSG00000138674.17	ENST00000395310.7:ENST00000513858.5:ENST00000348405.8:ENST00000503937.5:ENST00000448323.5:ENST00000311785.11:ENST00000509142.5:ENST00000443462.6:ENST00000500777.6:ENST00000505472.5:ENST00000355196.6:ENST00000508502.5:ENST00000264405.9:ENST00000505984.5:ENST00000511338.1:ENST00000515749.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	128	2	2.40853	2.77644	3.14435	6.4029e-4	5.14801e-4	0.0231685	0.0203753
chr20	31713550	31713650	7325279	0	-	0.5	(0.476,0.515]	chr20	745996	286	INTRON	INTRON	BCL2L1	ENSG00000171552.14	ENST00000376055.9:ENST00000376062.6:ENST00000307677.5:ENST00000420488.6:ENST00000439267.2:ENST00000678563.1:ENST00000456404.6:ENST00000676942.1:ENST00000676582.1:ENST00000434194.2:ENST00000677194.1:ENST00000678671.1:ENST00000677494.1:ENST00000422920.2:ENST00000450273.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	73	2	2.66112	2.776385	2.89165	0.0044598	0.00142068	0.0592169	0.034662
chr20	50525581	50525681	7286066	0	+	0.28	[0,0.28]	chr20	741241	146	INTRON	INTRON	PTPN1	ENSG00000196396.10	ENST00000541713.5:ENST00000371621.5	protein_coding	protein_coding	protein_coding	protein_coding	2	58	2	2.59548	2.776385	2.95729	0.0346067	0.0101824	0.136649	0.089002
chr6	53286766	53286865	3107560	0	-	0.242424	[0,0.28]	chr6	291014	87	INTRON	INTRON	ELOVL5	ENSG00000012660.14	ENST00000370918.8:ENST00000542638.5:ENST00000304434.11:ENST00000485336.5:ENST00000465983.5:ENST00000486973.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	58	2	2.59548	2.776385	2.95729	0.0346067	0.0101824	0.136649	0.089002
chr7	53808212	53808312	3534232	0	-	0.27	[0,0.28]	chr7	329607	270	INTRON	INTRON	LINC01446	ENSG00000205628.5	ENST00000380970.2:ENST00000663138.2:ENST00000660945.1:ENST00000662931.1:ENST00000661502.1:ENST00000670945.1:ENST00000666213.1:ENST00000663312.1:ENST00000660413.1:ENST00000652440.1:ENST00000665927.1:ENST00000659794.1:ENST00000670507.1:ENST00000659481.1:ENST00000659250.1:ENST00000662259.1:ENST00000669638.1:ENST00000650830.1:ENST00000668489.1:ENST00000652104.1:ENST00000656718.1:ENST00000663872.1:ENST00000660958.1:ENST00000656885.1:ENST00000654050.1:ENST00000651858.1:ENST00000651506.1:ENST00000658338.1:ENST00000651951.1	lncRNA	lncRNA	lncRNA	lncRNA	2	58	2	2.59548	2.776385	2.95729	0.0346067	0.0101824	0.136649	0.089002
chr21	9117675	9117775	7426516	0	-	0.47	(0.44,0.476]	chr21	757579	294	INTRON	INTRON	TEKT4P2	ENSG00000188681.12	ENST00000690061.1:ENST00000689141.1:ENST00000688310.1:ENST00000687537.1:ENST00000690096.1:ENST00000687888.1:ENST00000690389.1:ENST00000684989.1:ENST00000416067.6:ENST00000693307.1:ENST00000692383.1:ENST00000685666.1:ENST00000688451.1:ENST00000691190.1:ENST00000685532.1:ENST00000687488.1:ENST00000690713.1:ENST00000691834.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	8	135	2	2.73339	2.7763	2.81921	7.10539e-4	1.37991e-4	0.0243894	0.0101125
chr19	48853481	48853581	7199673	0	-	0.35	(0.32,0.35]	chr19	729992	4	SS5_PROX	SS5_PROX:INTRON	PLEKHA4	ENSG00000105559.12	ENST00000263265.11:ENST00000355496.9:ENST00000595867.1:ENST00000594195.1	protein_coding	protein_coding	protein_coding	protein_coding	4	88	2	2.2664	2.77628	3.28616	0.0199969	2.51931e-4	0.109608	0.0141209
chr22	19103962	19104061	7551830	0	-	0.464646	(0.44,0.476]	chr22	771903	141	INTRON	INTRON	DGCR2	ENSG00000070413.20	ENST00000537045.5:ENST00000545799.5:ENST00000263196.12:ENST00000389262.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	74	2	2.73781	2.776215	2.81462	0.00276493	0.00247064	0.04867	0.0446195
chr19	10790261	10790360	7014506	0	+	0.444444	(0.44,0.476]	chr19	696979	32	INTRON	INTRON	DNM2	ENSG00000079805.19	ENST00000683738.1:ENST00000682285.1:ENST00000682524.1:ENST00000355667.11:ENST00000389253.9:ENST00000585892.5:ENST00000359692.10:ENST00000408974.8:ENST00000591701.5:ENST00000587485.1:ENST00000587830.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	58	2	2.00609	2.776205	3.54632	0.0360127	9.9951e-4	0.152355	0.0288906
chr18	1346752	1346852	6941647	0	-	0.37	(0.35,0.378]	chr18	686579	228	INTRON	INTRON	LINC00470	ENSG00000132204.14	ENST00000657423.1:ENST00000657618.1:ENST00000584090.5:ENST00000660947.1:ENST00000669242.1:ENST00000660475.1:ENST00000653775.1:ENST00000661931.1:ENST00000412816.7:ENST00000577867.5:ENST00000584492.5:ENST00000667416.1:ENST00000661852.1:ENST00000657919.1:ENST00000661646.1:ENST00000667776.1:ENST00000654559.1:ENST00000661233.1:ENST00000653213.1:ENST00000659094.1:ENST00000660964.1:ENST00000577403.6:ENST00000660358.1:ENST00000669153.1:ENST00000657121.1:ENST00000655957.1:ENST00000659289.1:ENST00000665133.1:ENST00000671558.1:ENST00000666542.1:ENST00000663512.1:ENST00000582862.6:ENST00000578835.5:ENST00000669312.1:ENST00000581430.5:ENST00000581212.1:ENST00000658090.1	lncRNA	lncRNA	lncRNA	lncRNA	7	123	2	2.50365	2.7761899999999997	3.04873	0.00106752	5.68631e-4	0.0299955	0.0217398
chr2	96634278	96634378	1181159	0	-	0.48	(0.476,0.515]	chr2	126525	1	SS3_PROX	SS3_PROX:INTRON	KANSL3	ENSG00000114982.19	ENST00000354204.10:ENST00000431828.6:ENST00000487070.5:ENST00000420155.5:ENST00000670907.1:ENST00000666923.1:ENST00000597150.5:ENST00000444759.5:ENST00000452268.5:ENST00000425656.5:ENST00000448075.1:ENST00000451819.5:ENST00000416138.1:ENST00000418735.1:ENST00000475820.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	83	2	1.94611	2.7761899999999997	3.60627	0.0075261	7.49088e-4	0.0773151	0.0251179
chr15	75518755	75518854	6224697	0	-	0.464646	(0.44,0.476]	chr15	594623	10	INTRON	INTRON	PTPN9	ENSG00000169410.11	ENST00000618819.5:ENST00000561731.1	protein_coding	protein_coding	protein_coding	protein_coding	5	88	2	2.70421	2.776105	2.848	0.00215274	9.23275e-4	0.0417866	0.0278392
chr1	36287967	36288065	73571	0	+	0.397959	(0.378,0.408]	chr1	9391	3	INTRON	INTRON	THRAP3	ENSG00000054118.15	ENST00000469141.6:ENST00000648638.1:ENST00000354618.10	protein_coding	protein_coding	protein_coding	protein_coding	6	89	2	2.27284	2.77603	3.27922	0.00312717	0.00173415	0.0499153	0.03851
chr7	116869824	116869923	3385435	0	+	0.393939	(0.378,0.408]	chr7	317031	68	INTRON	INTRON	CAPZA2	ENSG00000198898.15	ENST00000464223.5:ENST00000484325.1:ENST00000414148.6:ENST00000361183.8:ENST00000449080.5:ENST00000639546.1:ENST00000426421.5:ENST00000490693.5:ENST00000417431.5:ENST00000461878.5:ENST00000466023.1:ENST00000464669.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	118	2	1.82032	2.776025	3.73173	0.01477	1.59496e-5	0.0984422	0.00301858
chr15	22562434	22562488	5975217	0	+	0.462963	(0.44,0.476]	chr15	568182	1	SS3_PROX	SS3_PROX:INTRON	HERC2P2	ENSG00000276550.5	ENST00000613386.4:ENST00000619021.4:ENST00000615156.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	5	76	2	1.68545	2.7760249999999997	3.8666	0.0322071	1.50865e-4	0.132543	0.0106137
chrX	41091603	41091703	7644123	0	+	0.3	(0.28,0.32]	chrX	782230	51	INTRON	INTRON	USP9X	ENSG00000124486.14	ENST00000324545.9:ENST00000378308.7	protein_coding	protein_coding	protein_coding	protein_coding	3	69	2	2.42868	2.776	3.12332	0.0105331	0.00698537	0.0908969	0.0718189
chr9	37156338	37156438	4118017	0	+	0.33	(0.32,0.35]	chr9	375382	85	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000322831.6:ENST00000461038.5:ENST00000488607.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	187	2	2.10761	2.775975	3.44434	0.00294625	1.98095e-5	0.0484512	0.00343249
chr7	152318929	152319029	3680118	0	-	0.34	(0.32,0.35]	chr7	341641	32	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000684262.1:ENST00000682301.1:ENST00000452749.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	87	2	2.3471	2.775945	3.20479	0.0156413	3.7902e-4	0.101393	0.0176313
chr1	109395524	109395622	520998	0	-	0.244898	[0,0.28]	chr1	61205	23	INTRON	INTRON	SORT1	ENSG00000134243.12	ENST00000256637.8:ENST00000471996.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	98	2	2.65205	2.775935	2.89982	0.0158893	0.00186389	0.101453	0.0399675
chr6	166953816	166953913	3264294	0	-	0.494845	(0.476,0.515]	chr6	303043	14	EXON_MRNA	EXON_MRNA:INTRON	ENSG00000249141:RNASET2	ENSG00000249141.1:ENSG00000026297.17	ENST00000507747.1:ENST00000508775.6:ENST00000683770.1:ENST00000611959.2:ENST00000620173.5:ENST00000682774.1:ENST00000684236.1:ENST00000683968.1:ENST00000366855.10:ENST00000421787.5:ENST00000476238.6:ENST00000028008.9:ENST00000478180.6:ENST00000358165.7:ENST00000683158.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	200	2	2.3725	2.775855	3.17921	5.6462e-4	8.10725e-6	0.021937	0.00204371
chr1	1570293	1570393	360277	0	-	0.43	(0.408,0.44]	chr1	41853	50	INTRON	INTRON	SSU72	ENSG00000160075.12	ENST00000291386.4:ENST00000378725.3:ENST00000359060.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	44	2	2.3975	2.77582	3.15414	0.040266	0.00469847	0.161534	0.0600108
chr18	41977413	41977512	6897674	0	+	0.343434	(0.32,0.35]	chr18	683380	61	INTRON	INTRON	PIK3C3	ENSG00000078142.14	ENST00000262039.9:ENST00000398870.7:ENST00000591011.1:ENST00000589550.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	64	2	2.22429	2.775795	3.3273	0.0226421	0.00218894	0.117557	0.0435144
chr5	140640364	140640440	2504321	0	+	0.302632	(0.28,0.32]	chr5	239379	1	INTRON	INTRON	TMCO6	ENSG00000113119.13	ENST00000513002.5:ENST00000509217.6:ENST00000394671.8:ENST00000511410.5:ENST00000394669.8:ENST00000504069.6:ENST00000515653.1:ENST00000514449.5:ENST00000505086.2:ENST00000252100.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	98	2	2.51426	2.775785	3.03731	0.00781326	0.0014867	0.0788246	0.035
chr1	51552981	51553081	98899	0	+	0.4	(0.378,0.408]	chr1	13212	341	INTRON	INTRON	EPS15-AS1	ENSG00000227070.1	ENST00000415031.1:ENST00000426017.1	lncRNA	lncRNA	lncRNA	lncRNA	3	58	2	1.94681	2.77555	3.60429	0.0457723	5.71664e-4	0.149888	0.0217398
chr1	247193100	247193200	683922	0	-	0.38	(0.378,0.408]	chr1	80183	17	INTRON	INTRON	ZNF731P	ENSG00000227671.4	ENST00000421406.1	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	3	58	2	1.94681	2.77555	3.60429	0.0457723	5.71664e-4	0.149888	0.0217398
chr19	910096	910196	7110907	0	-	0.49	(0.476,0.515]	chr19	714174	71	INTRON	INTRON	R3HDM4	ENSG00000198858.10	ENST00000589428.5:ENST00000361574.10:ENST00000587975.2:ENST00000590454.2:ENST00000589445.1:ENST00000626716.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	55	2	2.26034	2.77554	3.29074	0.0166235	0.00272563	0.110511	0.0467523
chr12	132770419	132770514	5449598	0	-	0.547368	(0.515,0.57]	chr12	521960	17	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	GOLGA3	ENSG00000090615.16	ENST00000204726.9:ENST00000450791.8:ENST00000693666.1:ENST00000690057.1:ENST00000688114.1:ENST00000687190.1:ENST00000690511.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	14	114	2	1.21168	2.7754700000000003	4.33926	0.0306715	1.1739e-5	0.143385	0.00271029
chr11	70421369	70421469	4821857	0	+	0.43	(0.408,0.44]	chr11	449644	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	CTTN	ENSG00000085733.16	ENST00000346329.7:ENST00000301843.13:ENST00000376561.7:ENST00000527962.5:ENST00000483662.2:ENST00000498223.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	77	2	1.91269	2.77527	3.63785	0.0153219	4.70012e-4	0.100173	0.0196294
chr20	5555452	5555551	7311767	0	-	0.515152	(0.476,0.515]	chr20	744510	72	INTRON	INTRON	GPCPD1	ENSG00000125772.14	ENST00000379019.7:ENST00000481038.5:ENST00000418646.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	56	2	2.13304	2.7751599999999996	3.41728	0.024866	0.00165726	0.132101	0.0369207
chr1	1317151	1317250	359485	0	-	0.454545	(0.44,0.476]	chr1	41630	11	EXON_LNCRNA	EXON_LNCRNA:INTRON	INTS11	ENSG00000127054.22	ENST00000540437.5:ENST00000545578.5:ENST00000620829.4:ENST00000435064.6:ENST00000323275.10:ENST00000411962.5:ENST00000462432.5:ENST00000419704.5:ENST00000458452.7:ENST00000421495.6:ENST00000532772.5:ENST00000450926.6:ENST00000527098.5:ENST00000528879.5:ENST00000531377.5:ENST00000434694.6:ENST00000488042.6:ENST00000526797.5:ENST00000526332.5:ENST00000430786.5:ENST00000527719.5:ENST00000530031.5:ENST00000526113.1:ENST00000526904.5:ENST00000525603.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	88	2	2.73545	2.775035	2.81462	0.00247064	7.908e-4	0.0446195	0.0258324
chr12	49267970	49268069	5132751	0	+	0.393939	(0.378,0.408]	chr12	483870	24	INTRON	INTRON	TUBA1C	ENSG00000167553.17	ENST00000541364.5:ENST00000549818.5:ENST00000552448.1:ENST00000552125.1:ENST00000549183.1:ENST00000301072.11	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	129	2	2.46345	2.77499	3.08653	0.00827342	7.70041e-5	0.0813266	0.00783983
chr2	182946327	182946426	1285081	0	-	0.545455	(0.515,0.57]	chr2	135307	38	INTRON	INTRON	NCKAP1	ENSG00000061676.15	ENST00000361354.9:ENST00000360982.2:ENST00000478449.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	77	2	2.11384	2.77491	3.43598	0.0118599	7.05043e-5	0.0899583	0.00694412
chr17	17212788	17212884	6735807	0	-	0.333333	(0.32,0.35]	chr17	660861	7	UTR3	UTR3:EXON_MRNA	FLCN	ENSG00000154803.13	ENST00000285071.9	protein_coding	protein_coding	protein_coding	protein_coding	6	99	2	1.43561	2.77489	4.11417	0.0543363	5.52952e-5	0.164972	0.00609037
chr7	105027029	105027129	3374746	0	+	0.36	(0.35,0.378]	chr7	315854	121	INTRON	INTRON	KMT2E	ENSG00000005483.22	ENST00000622386.2:ENST00000257745.9:ENST00000334884.9:ENST00000311117.8:ENST00000478990.5:ENST00000480368.5:ENST00000495267.5:ENST00000476671.5:ENST00000667857.1:ENST00000474203.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	13	247	2	2.35526	2.77486	3.19446	0.00115528	2.27812e-6	0.031067	9.46989e-4
chr10	34606604	34606704	4598205	0	-	0.42	(0.408,0.44]	chr10	423718	891	INTRON	INTRON	PARD3	ENSG00000148498.17	ENST00000545260.5:ENST00000545693.5:ENST00000346874.9:ENST00000350537.9:ENST00000374788.8:ENST00000374789.8:ENST00000374790.8:ENST00000374794.8:ENST00000696673.1:ENST00000374776.6:ENST00000340077.9:ENST00000374773.6	protein_coding	protein_coding	protein_coding	protein_coding	2	43	2	2.49258	2.774815	3.05705	0.0314608	0.00658331	0.144381	0.0701901
chr8	127950834	127950934	3861627	0	+	0.41	(0.408,0.44]	chr8	355467	75	INTRON	INTRON	PVT1	ENSG00000249859.13	ENST00000667305.1:ENST00000690350.1:ENST00000653522.1:ENST00000661830.1:ENST00000657289.1:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000656880.1:ENST00000660200.1:ENST00000657211.1:ENST00000653845.1:ENST00000517525.2:ENST00000651587.1:ENST00000692980.1:ENST00000666353.1:ENST00000654324.1:ENST00000657693.1:ENST00000666080.1:ENST00000667539.1:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000664293.1:ENST00000662410.1:ENST00000670795.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000654091.1:ENST00000657356.1:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000662061.1:ENST00000656491.1:ENST00000667714.1:ENST00000654105.1:ENST00000665721.1:ENST00000660438.1:ENST00000659326.1:ENST00000666842.1:ENST00000517790.2:ENST00000654369.1:ENST00000664995.1:ENST00000656532.1:ENST00000661988.1:ENST00000670714.1:ENST00000669951.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000656693.1:ENST00000668123.1:ENST00000666776.1:ENST00000664299.1:ENST00000659912.1:ENST00000670532.1:ENST00000660896.1:ENST00000523068.2:ENST00000519481.6:ENST00000669082.1:ENST00000671088.1:ENST00000670204.1:ENST00000652695.1:ENST00000517838.6:ENST00000663461.1:ENST00000513868.6:ENST00000670626.1	lncRNA	lncRNA	lncRNA	lncRNA	2	43	2	2.49258	2.774815	3.05705	0.0314608	0.00658331	0.144381	0.0701901
chr21	37440273	37440372	7406964	0	+	0.444444	(0.44,0.476]	chr21	754891	95	INTRON	INTRON	DYRK1A	ENSG00000157540.22	ENST00000646523.1:ENST00000647425.1:ENST00000647188.2:ENST00000647504.1:ENST00000644942.1:ENST00000338785.8:ENST00000643624.1:ENST00000643551.1:ENST00000426672.6:ENST00000398960.7:ENST00000646548.1:ENST00000645424.1:ENST00000643854.1:ENST00000455097.6:ENST00000642309.1:ENST00000645774.1:ENST00000398956.2	protein_coding	protein_coding	protein_coding	protein_coding	3	55	2	2.13779	2.774775	3.41176	0.0264596	0.00130987	0.122506	0.0333932
chr3	183986511	183986607	1882306	0	-	0.322917	(0.32,0.35]	chr3	188197	12	UTR3	UTR3:EXON_MRNA:INTRON	ABCC5	ENSG00000114770.17	ENST00000334444.11:ENST00000265586.10:ENST00000437205.5:ENST00000382494.6:ENST00000392579.6:ENST00000443376.5:ENST00000427120.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	88	2	2.27097	2.774775	3.27858	0.00368368	0.00347642	0.0540643	0.0535094
chr7	5055410	5055509	3271813	0	+	0.292929	(0.28,0.32]	chr7	304061	70	INTRON	INTRON	RBAK	ENSG00000146587.18	ENST00000353796.7:ENST00000396912.2	protein_coding	protein_coding	protein_coding	protein_coding	2	52	2	2.32871	2.774725	3.22074	0.0581621	0.00362783	0.167723	0.055479
chr11	28095971	28096067	4938325	0	-	0.364583	(0.35,0.378]	chr11	462517	8	INTRON	INTRON	KIF18A	ENSG00000121621.7	ENST00000263181.7:ENST00000533466.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	148	2	2.77125	2.7746700000000004	2.77809	0.00103021	1.27682e-4	0.029231300000000002	0.00970881
chr16	81448935	81449035	6405038	0	+	0.58	(0.57,1]	chr16	615026	30	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8	protein_coding	protein_coding	protein_coding	protein_coding	3	30	2	2.6547	2.7746649999999997	2.89463	0.00788262	0.00346848	0.076155	0.0539802
chr2	130045056	130045156	1227474	0	-	0.52	(0.515,0.57]	chr2	130687	3	SS5_PROX	SS5_PROX:INTRON	ENSG00000286058	ENSG00000286058.1	ENST00000325390.7:ENST00000651005.1	lncRNA	lncRNA	lncRNA	lncRNA	4	64	2	2.38476	2.774655	3.16455	0.0110593	3.23741e-4	0.0873897	0.0159645
chr1	75749718	75749809	144237	0	+	0.461538	(0.44,0.476]	chr1	16282	1	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	ACADM	ENSG00000117054.15	ENST00000679530.1:ENST00000680582.1:ENST00000473018.3:ENST00000680694.1:ENST00000541113.6:ENST00000681063.1:ENST00000681913.1:ENST00000680613.1:ENST00000680805.1:ENST00000681278.1:ENST00000681209.1:ENST00000680691.1:ENST00000681037.1:ENST00000679976.1:ENST00000680749.1:ENST00000681430.1:ENST00000681289.1:ENST00000680964.1:ENST00000679615.1:ENST00000681446.1:ENST00000681680.1:ENST00000681621.1:ENST00000681930.1:ENST00000679509.1:ENST00000680798.1:ENST00000680517.1:ENST00000681361.1:ENST00000681790.1:ENST00000681837.1:ENST00000680743.1:ENST00000681616.1:ENST00000680948.1:ENST00000681916.1:ENST00000526196.5:ENST00000526129.5:ENST00000679709.1:ENST00000370841.9:ENST00000370834.9:ENST00000680844.1:ENST00000681720.1:ENST00000681548.1:ENST00000681450.1:ENST00000679687.1:ENST00000680662.1:ENST00000679704.1:ENST00000525808.5:ENST00000534334.5:ENST00000420607.6:ENST00000680166.1:ENST00000681730.1:ENST00000529059.5:ENST00000532207.6:ENST00000528016.1:ENST00000680315.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	55	2	2.29126	2.774635	3.25801	0.0165638	0.00248185	0.102621	0.0460771
chr19	35655950	35656047	7056008	0	+	0.474227	(0.44,0.476]	chr19	704251	9	INTRON	INTRON	COX6B1	ENSG00000126267.11	ENST00000649813.2:ENST00000592141.6:ENST00000392201.1:ENST00000590618.1	protein_coding	protein_coding	protein_coding	protein_coding	3	55	2	2.29126	2.774635	3.25801	0.0165638	0.00248185	0.102621	0.0460771
chr7	132904173	132904273	3644104	0	-	0.46	(0.44,0.476]	chr7	338848	168	INTRON	INTRON	CHCHD3	ENSG00000106554.13	ENST00000262570.10:ENST00000448878.6:ENST00000496427.5:ENST00000423635.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	55	2	2.29126	2.774635	3.25801	0.0165638	0.00248185	0.102621	0.0460771
chr20	34419468	34419566	7259682	0	+	0.469388	(0.44,0.476]	chr20	737453	8	EXON_LNCRNA	EXON_LNCRNA:INTRON	ITCH	ENSG00000078747.16	ENST00000374864.10:ENST00000535650.7:ENST00000670516.1:ENST00000658310.1:ENST00000665484.1:ENST00000664852.1:ENST00000660337.1:ENST00000665428.1:ENST00000262650.10:ENST00000662871.1:ENST00000665346.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	84	2	2.11598	2.774515	3.43305	0.0035604	0.00159668	0.0548355	0.0364566
chr1	23979890	23979990	402167	0	-	0.73	(0.57,1]	chr1	48303	3	SS5_PROX	SS5_PROX:INTRON	SRSF10	ENSG00000188529.15	ENST00000492112.3:ENST00000344989.10:ENST00000341154.10:ENST00000453840.7:ENST00000484146.6:ENST00000473858.5:ENST00000374452.9:ENST00000374453.7:ENST00000343255.9:ENST00000495785.1:ENST00000485292.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	15	130	2	2.72903	2.77447	2.81991	4.33355e-5	4.11708e-6	0.00532052	0.00146847
chr1	223967829	223967928	643551	0	-	0.373737	(0.35,0.378]	chr1	75994	52	INTRON	INTRON	GTF2IP20	ENSG00000272645.4	ENST00000634905.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	4	74	2	1.87586	2.77446	3.67306	0.0268864	7.05001e-4	0.135275	0.024224
chr4	82821529	82821608	2179369	0	-	0.291139	(0.28,0.32]	chr4	214242	2	SS3_PROX	SS3_PROX:INTRON	SEC31A	ENSG00000138674.17	ENST00000395310.7:ENST00000513858.5:ENST00000348405.8:ENST00000503937.5:ENST00000448323.5:ENST00000311785.11:ENST00000509142.5:ENST00000443462.6:ENST00000500777.6:ENST00000505472.5:ENST00000355196.6:ENST00000508502.5:ENST00000515062.5:ENST00000264405.9:ENST00000505984.5	protein_coding	protein_coding	protein_coding	protein_coding	4	87	2	2.72123	2.77446	2.82769	0.0169391	0.00112621	0.103888	0.0308424
chr17	75219305	75219405	6674403	0	+	0.58	(0.57,1]	chr17	651381	6	INTRON	INTRON	NUP85	ENSG00000125450.11	ENST00000245544.9:ENST00000583948.5:ENST00000579324.5:ENST00000449421.6:ENST00000581104.5:ENST00000579298.5:ENST00000578830.5:ENST00000583877.5:ENST00000577561.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	30	2	2.28103	2.7743149999999996	3.2676	0.0151554	0.00176203	0.108535	0.0376652
chr9	135958562	135958660	4372544	0	-	0.540816	(0.515,0.57]	chr9	402553	28	INTRON	INTRON	UBAC1	ENSG00000130560.9	ENST00000371756.4:ENST00000478485.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	86	2	2.45261	2.7742050000000003	3.0958	0.00116897	5.63557e-4	0.0315666	0.0219303
chr5	62581006	62581098	2364728	0	+	0.293478	(0.28,0.32]	chr5	228026	7	UTR3	UTR3:EXON_MRNA:INTRON	IPO11	ENSG00000086200.17	ENST00000325324.11:ENST00000409296.7:ENST00000511713.5:ENST00000511133.1:ENST00000413749.2:ENST00000409534.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	52	2	2.67453	2.7741749999999996	2.87382	0.021289	0.014868	0.123318	0.0989021
chr1	193125517	193125617	284641	0	+	0.39	(0.378,0.408]	chr1	32745	3	SS5_PROX	SS5_PROX:INTRON	CDC73	ENSG00000134371.14	ENST00000649895.1:ENST00000643006.1:ENST00000367435.5:ENST00000650197.1:ENST00000643784.1:ENST00000648071.1:ENST00000635846.1:ENST00000649606.1:ENST00000647662.1:ENST00000482484.1:ENST00000649706.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	79	2	2.21238	2.77415	3.33592	0.0218124	1.591e-4	0.11491	0.0108481
chr6	37174855	37174950	2855303	0	+	0.284211	(0.28,0.32]	chr6	269940	9	UTR3	UTR3:EXON_MRNA	PIM1	ENSG00000137193.14	ENST00000373509.6	protein_coding	protein_coding	protein_coding	protein_coding	47	802	2	2.19155	2.7741499999999997	3.35675	7.94718e-5	3.22101e-6	0.00742353	0.00128387
chr22	49560763	49560863	7601687	0	-	0.52	(0.515,0.57]	chr22	778566	1192	INTRON	INTRON	MIR3667HG	ENSG00000188511.13	ENST00000414287.5:ENST00000416411.1	lncRNA	lncRNA	lncRNA	lncRNA	3	48	2	2.01737	2.7741100000000003	3.53085	0.0352218	6.59951e-4	0.137535	0.0232396
chr6	166972888	166972988	3264367	0	-	0.39	(0.378,0.408]	chr6	303066	1	SS3_PROX	SS3_PROX:INTRON	ENSG00000227598	ENSG00000227598.1	ENST00000444102.1	lncRNA	lncRNA	lncRNA	lncRNA	4	77	2	2.74646	2.774005	2.80155	0.00278307	0.00271684	0.0481064	0.0469265
chr5	32155067	32155166	2597323	0	-	0.353535	(0.35,0.378]	chr5	246744	108	INTRON	INTRON	GOLPH3	ENSG00000113384.14	ENST00000265070.7:ENST00000503610.5:ENST00000512668.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	152	2	2.47507	2.773845	3.07262	0.00180709	4.82995e-5	0.0383374	0.00567485
chr22	16796477	16796577	7546364	0	-	0.41	(0.408,0.44]	chr22	771315	117	INTRON	INTRON	XKR3	ENSG00000172967.8	ENST00000331428.5:ENST00000684488.1	protein_coding	protein_coding	protein_coding	protein_coding	4	74	2	2.49218	2.773755	3.05533	0.00855168	6.50769e-4	0.0780217	0.0231135
chr7	44402341	44402441	3527401	0	-	0.34	(0.32,0.35]	chr7	328950	3	SS5_PROX	SS5_PROX:INTRON	NUDCD3	ENSG00000015676.18	ENST00000355451.8:ENST00000460110.5:ENST00000487118.1:ENST00000338427.10:ENST00000493613.5:ENST00000472246.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	64	2	2.2664	2.7737350000000003	3.28107	0.0199969	0.00262488	0.109608	0.0470772
chr10	72755101	72755201	4450725	0	+	0.36	(0.35,0.378]	chr10	410760	182	INTRON	INTRON	MCU	ENSG00000156026.15	ENST00000373053.8:ENST00000357157.10:ENST00000604679.5:ENST00000604372.5:ENST00000603649.5:ENST00000605597.5:ENST00000536019.5:ENST00000604152.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	73	2	1.70607	2.773635	3.8412	0.0482819	1.97447e-4	0.153283	0.0122531
chr16	81534084	81534184	6405892	0	+	0.61	(0.57,1]	chr16	615031	382	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6	protein_coding	protein_coding	protein_coding	protein_coding	2	24	2	2.36411	2.773555	3.183	0.0408868	0.00254356	0.161534	0.0448135
chr16	85497390	85497490	6414804	0	+	0.58	(0.57,1]	chr16	615465	1381	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	2	24	2	2.36411	2.773555	3.183	0.0408868	0.00254356	0.161534	0.0448135
chr22	20088590	20088686	7478315	0	+	0.572917	(0.57,1]	chr22	762710	9	INTRON	INTRON	DGCR8	ENSG00000128191.16	ENST00000383024.6:ENST00000351989.8:ENST00000495826.5:ENST00000407755.1:ENST00000498171.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	24	2	2.36411	2.773555	3.183	0.0408868	0.00254356	0.161534	0.0448135
chr1	17413917	17414017	384722	0	-	0.49	(0.476,0.515]	chr1	45458	2	SS3_PROX	SS3_PROX:INTRON	RCC2	ENSG00000179051.14	ENST00000375436.9:ENST00000375433.3	protein_coding	protein_coding	protein_coding	protein_coding	6	100	2	2.4029	2.7735	3.1441	0.0016811	5.63876e-4	0.0381232	0.0219303
chr17	42339062	42339137	6772525	0	-	0.453333	(0.44,0.476]	chr17	667078	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	STAT3	ENSG00000168610.16	ENST00000264657.10:ENST00000678044.1:ENST00000678906.1:ENST00000678960.1:ENST00000679014.1:ENST00000678043.1:ENST00000677442.1:ENST00000677723.1:ENST00000679166.1:ENST00000678792.1:ENST00000678764.1:ENST00000678048.1:ENST00000678674.1:ENST00000678445.1:ENST00000678913.1:ENST00000677421.1:ENST00000679231.1:ENST00000677030.1:ENST00000678827.1:ENST00000679185.1:ENST00000677820.1:ENST00000678905.1:ENST00000677479.1:ENST00000676636.1:ENST00000678572.1:ENST00000677271.1:ENST00000677152.1:ENST00000677603.1:ENST00000677002.1:ENST00000585517.5:ENST00000678535.1:ENST00000677308.1:ENST00000389272.7:ENST00000588969.5:ENST00000677763.1:ENST00000404395.3:ENST00000678659.1:ENST00000678108.1:ENST00000678529.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	41	2	2.74372	2.773235	2.80275	0.0153007	0.0146513	0.108569	0.0982604
chr19	47159272	47159371	7084166	0	+	0.454545	(0.44,0.476]	chr19	708792	17	INTRON	INTRON	SAE1	ENSG00000142230.13	ENST00000594144.5:ENST00000413379.7:ENST00000600706.5:ENST00000270225.12:ENST00000598840.5:ENST00000414294.6:ENST00000660039.1:ENST00000664120.1:ENST00000596995.1:ENST00000392776.3:ENST00000659110.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	41	2	2.74372	2.773235	2.80275	0.0153007	0.0146513	0.108569	0.0982604
chr17	46143726	46143826	6784373	0	-	0.5	(0.476,0.515]	chr17	669216	225	INTRON	INTRON	KANSL1	ENSG00000120071.15	ENST00000574590.6:ENST00000572904.6:ENST00000432791.7:ENST00000575318.6:ENST00000638275.1:ENST00000262419.10:ENST00000648792.1:ENST00000639531.1:ENST00000639150.1:ENST00000639853.1:ENST00000571698.2:ENST00000639375.1:ENST00000638269.1:ENST00000576248.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	73	2	2.73564	2.7732	2.81076	0.00333144	0.00203568	0.0512081	0.0417667
chr17	76238053	76238153	6841673	0	-	0.42	(0.408,0.44]	chr17	676698	252	INTRON	INTRON	RNF157	ENSG00000141576.16	ENST00000647930.1:ENST00000269391.11:ENST00000319945.10:ENST00000592271.1	protein_coding	protein_coding	protein_coding	protein_coding	6	85	2	1.60905	2.7731850000000002	3.93732	0.02971	1.0367e-4	0.129022	0.00863144
chr19	1616818	1616918	7112742	0	-	0.44	(0.408,0.44]	chr19	714593	6	INTRON	INTRON	TCF3	ENSG00000071564.17	ENST00000344749.9:ENST00000611869.5:ENST00000262965.12:ENST00000588136.7:ENST00000453954.6:ENST00000593064.5:ENST00000592628.5:ENST00000590684.5:ENST00000590436.5:ENST00000651991.1:ENST00000395423.7:ENST00000585855.2:ENST00000610756.4:ENST00000590605.2:ENST00000586410.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	41	2	2.58624	2.773155	2.96007	0.0273686	0.00753901	0.123904	0.0773151
chr10	49969941	49970041	4432911	0	+	0.57	(0.515,0.57]	chr10	408701	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	TIMM23B:TIMM23B-AGAP6	ENSG00000204152.14:ENSG00000178440.8	ENST00000478381.5:ENST00000651259.3:ENST00000651763.1:ENST00000651208.1:ENST00000652716.1:ENST00000483296.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	91	2	2.72642	2.7730699999999997	2.81972	7.31116e-4	5.44499e-4	0.0246497	0.0215237
chr17	6929888	6929988	6717504	0	-	0.41	(0.408,0.44]	chr17	658651	18	INTRON	INTRON	ALOX12-AS1	ENSG00000215067.11	ENST00000653385.1:ENST00000659418.1:ENST00000572385.5:ENST00000570562.5:ENST00000575889.5	lncRNA	lncRNA	lncRNA	lncRNA	2	41	2	2.6542	2.773065	2.89193	0.0227514	0.00950364	0.117618	0.0863579
chr10	96867811	96867910	4503321	0	+	0.242424	[0,0.28]	chr10	414536	90	INTRON	INTRON	LCOR	ENSG00000196233.14	ENST00000676067.1:ENST00000676257.1:ENST00000676187.1:ENST00000675151.1:ENST00000675687.1:ENST00000675251.1:ENST00000676123.1:ENST00000371103.8:ENST00000675471.1:ENST00000421806.4:ENST00000675902.1:ENST00000540664.6:ENST00000676414.1:ENST00000675537.1:ENST00000675117.1:ENST00000675125.1:ENST00000356016.7:ENST00000371097.8:ENST00000676381.1:ENST00000674796.1:ENST00000674725.1:ENST00000675971.1:ENST00000676373.1:ENST00000676314.1:ENST00000675915.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	58	2	2.68918	2.77304	2.8569	0.0275571	0.013822	0.123904	0.10247
chr16	18857398	18857495	6457375	0	-	0.278351	[0,0.28]	chr16	622743	12	EXON_MRNA	EXON_MRNA:INTRON	SMG1	ENSG00000157106.18	ENST00000446231.7:ENST00000565324.5:ENST00000569764.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	58	2	2.68918	2.77304	2.8569	0.0275571	0.013822	0.123904	0.10247
chr1	28266695	28266794	55587	0	+	0.525253	(0.515,0.57]	chr1	7196	64	INTRON	INTRON	SESN2	ENSG00000130766.5	ENST00000253063.4	protein_coding	protein_coding	protein_coding	protein_coding	3	47	2	2.51561	2.77299	3.03037	0.00635044	0.00608732	0.0723103	0.0676501
chr15	52032966	52033066	6029160	0	+	0.52	(0.515,0.57]	chr15	574427	47	INTRON	INTRON	MAPK6	ENSG00000069956.14	ENST00000560802.1:ENST00000691380.1:ENST00000558063.5:ENST00000560254.1:ENST00000681888.1:ENST00000261845.7:ENST00000680066.1:ENST00000680777.1:ENST00000558100.1:ENST00000680652.1:ENST00000558841.1:ENST00000558891.1:ENST00000560774.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	47	2	2.51561	2.77299	3.03037	0.00635044	0.00608732	0.0723103	0.0676501
chr15	65764886	65764984	6209519	0	-	0.540816	(0.515,0.57]	chr15	592611	31	INTRON	INTRON	DENND4A	ENSG00000174485.16	ENST00000443035.8:ENST00000431932.6:ENST00000564674.5:ENST00000568515.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	47	2	2.51561	2.77299	3.03037	0.00635044	0.00608732	0.0723103	0.0676501
chr10	94603810	94603910	4500223	0	+	0.47	(0.44,0.476]	chr10	414337	18	INTRON	INTRON	ENSG00000244332:HELLS	ENSG00000244332.1:ENSG00000119969.15	ENST00000432120.1:ENST00000371327.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	11	170	2	2.04922	2.7729850000000003	3.49675	0.00160916	1.86548e-5	0.0368475	0.00352007
chr7	129621798	129621897	3412222	0	+	0.555556	(0.515,0.57]	chr7	319009	96	INTRON	INTRON	NRF1	ENSG00000106459.15	ENST00000393232.6:ENST00000477428.5:ENST00000454688.5:ENST00000223190.8:ENST00000311967.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	47	2	2.45585	2.772935	3.09002	0.00797827	0.00491099	0.0798772	0.0609494
chr20	49279984	49280067	7284618	0	+	0.349398	(0.32,0.35]	chr20	741055	1	SS3_PROX	SS3_PROX:INTRON	ZFAS1	ENSG00000177410.13	ENST00000371743.8:ENST00000417721.5:ENST00000441722.5:ENST00000450535.5:ENST00000458653.5:ENST00000428008.6:ENST00000620594.2:ENST00000652916.1:ENST00000326677.9:ENST00000623640.1	lncRNA	lncRNA	lncRNA	lncRNA	8	122	2	1.78841	2.772675	3.75694	0.0108341	3.37248e-4	0.0872636	0.0163178
chr4	1812361	1812459	2095308	0	-	0.306122	(0.28,0.32]	chr4	207261	10	UTR3	UTR3:EXON_MRNA	LETM1	ENSG00000168924.15	ENST00000302787.3	protein_coding	protein_coding	protein_coding	protein_coding	2	51	2	2.57195	2.77264	2.97333	0.0331711	0.00857834	0.133994	0.083729
chr8	123196412	123196510	3851233	0	+	0.306122	(0.28,0.32]	chr8	354813	19	INTRON	INTRON	FAM83A	ENSG00000147689.17	ENST00000536633.2:ENST00000518448.5:ENST00000690554.1:ENST00000522648.5:ENST00000276699.10:ENST00000521468.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	51	2	2.57195	2.77264	2.97333	0.0331711	0.00857834	0.133994	0.083729
chr19	11603210	11603310	7018075	0	+	0.32	(0.28,0.32]	chr19	697688	52	INTRON	INTRON	ZNF627	ENSG00000198551.10	ENST00000593279.5:ENST00000585493.5:ENST00000587939.5:ENST00000361113.10:ENST00000588174.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	51	2	2.62686	2.77259	2.91832	0.0289217	0.0102484	0.1274	0.089002
chr2	176286482	176286582	925383	0	+	0.37	(0.35,0.378]	chr2	101669	157	INTRON	INTRON	MTX2	ENSG00000128654.14	ENST00000420864.5:ENST00000249442.11:ENST00000423461.6:ENST00000443241.5:ENST00000452865.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	96	2	2.69	2.77258	2.85516	0.00239229	0.00107271	0.0440612	0.0300133
chr1	246568584	246568684	350004	0	+	0.49	(0.476,0.515]	chr1	40488	14	INTRON	INTRON	CNST	ENSG00000162852.14	ENST00000483271.1:ENST00000366513.9:ENST00000366512.7:ENST00000366511.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	55	2	2.41121	2.77255	3.13389	0.0110342	0.00405473	0.0873897	0.0578376
chr17	42503168	42503268	6611755	0	+	0.38	(0.378,0.408]	chr17	644171	3	SS5_PROX	SS5_PROX:INTRON	ATP6V0A1	ENSG00000033627.17	ENST00000393829.6:ENST00000343619.9:ENST00000537728.5:ENST00000264649.10:ENST00000585525.5:ENST00000544137.5:ENST00000587510.5:ENST00000586201.5:ENST00000588138.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	68	2	2.18512	2.77255	3.35998	0.00902136	0.00230615	0.0851259	0.0428247
chr17	59099110	59099210	6801859	0	-	0.5	(0.476,0.515]	chr17	671820	74	INTRON	INTRON	TRIM37	ENSG00000108395.14	ENST00000393066.7:ENST00000577554.5:ENST00000262294.12:ENST00000393065.6:ENST00000580973.5:ENST00000580122.5:ENST00000580620.5:ENST00000583387.1:ENST00000584889.3:ENST00000625984.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	55	2	2.41121	2.77255	3.13389	0.0110342	0.00405473	0.0873897	0.0578376
chr17	82619528	82619628	6853394	0	-	0.43	(0.408,0.44]	chr17	679342	4	SS3_PROX	SS3_PROX:INTRON	WDR45B	ENSG00000141580.16	ENST00000392325.9:ENST00000572583.5:ENST00000573656.5:ENST00000571835.5:ENST00000573616.5:ENST00000571767.5:ENST00000571817.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	123	2	2.34467	2.77238	3.20009	7.0284e-4	4.59843e-4	0.0241881	0.01978
chr17	75216365	75216459	6674372	0	+	0.489362	(0.476,0.515]	chr17	651375	1	INTRON	INTRON	NUP85	ENSG00000125450.11	ENST00000245544.9:ENST00000583948.5:ENST00000579324.5:ENST00000449421.6:ENST00000581104.5:ENST00000579298.5:ENST00000578830.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	84	2	1.72573	2.772335	3.81894	0.0196488	1.96038e-4	0.109608	0.0122528
chr7	119769621	119769721	3629035	0	-	0.32	(0.28,0.32]	chr7	337323	171	INTRON	INTRON	LINC02476	ENSG00000225546.6	ENST00000660268.1:ENST00000431071.5:ENST00000426413.2	lncRNA	lncRNA	lncRNA	lncRNA	12	229	2	2.28297	2.772335	3.2617	5.1917e-4	1.56549e-4	0.020443	0.0113754
chr7	128993127	128993216	3635956	0	-	0.280899	(0.28,0.32]	chr7	338094	7	INTRON	INTRON	TNPO3	ENSG00000064419.14	ENST00000627585.2:ENST00000265388.10:ENST00000471234.5:ENST00000482320.5:ENST00000471166.1	protein_coding	protein_coding	protein_coding	protein_coding	4	95	2	2.29708	2.772255	3.24743	0.0195087	3.55762e-4	0.109483	0.0168968
chr1	51358225	51358323	452715	0	-	0.418367	(0.408,0.44]	chr1	54293	10	INTRON	INTRON	EPS15	ENSG00000085832.17	ENST00000371733.8:ENST00000371730.6	protein_coding	protein_coding	protein_coding	protein_coding	8	136	2	2.38209	2.7722049999999996	3.16232	0.0013549	7.71549e-5	0.0336321	0.00735438
chr4	1940463	1940560	1911278	0	+	0.391753	(0.378,0.408]	chr4	191788	8	UTR3	UTR3:EXON_MRNA:INTRON	NSD2	ENSG00000109685.19	ENST00000508803.6:ENST00000514045.5:ENST00000398261.6:ENST00000382891.9:ENST00000353275.9:ENST00000382892.6:ENST00000382895.7:ENST00000312087.10:ENST00000420906.6:ENST00000503128.5:ENST00000677559.1:ENST00000512700.2:ENST00000678714.1:ENST00000511904.1:ENST00000513726.5:ENST00000678128.1:ENST00000482415.6:ENST00000514329.5:ENST00000502425.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	105	2	2.64921	2.772195	2.89518	0.00190046	4.93004e-4	0.0393643	0.0200992
chr7	139390219	139390319	3437899	0	+	0.38	(0.378,0.408]	chr7	320340	137	INTRON	INTRON	LUC7L2:FMC1-LUC7L2	ENSG00000146963.18:ENSG00000269955.2	ENST00000541170.7:ENST00000541515.3:ENST00000608368.5:ENST00000619796.4:ENST00000354926.9:ENST00000456182.5:ENST00000263545.7:ENST00000463912.5:ENST00000498518.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	129	2	1.64906	2.772125	3.89519	0.0203406	5.63962e-6	0.110499	0.0016514
chr2	26376839	26376938	715325	0	+	0.313131	(0.28,0.32]	chr2	82601	13	INTRON	INTRON	SELENOI	ENSG00000138018.19	ENST00000260585.12:ENST00000447170.1	protein_coding	protein_coding	protein_coding	protein_coding	3	70	2	2.73077	2.772055	2.81334	0.0220748	0.00248627	0.115395	0.0461207
chr17	76563994	76564091	6677403	0	+	0.371134	(0.35,0.378]	chr17	652151	10	EXON_LNCRNA	EXON_LNCRNA	SNHG16	ENSG00000163597.16	ENST00000661348.2:ENST00000670737.2:ENST00000653677.2:ENST00000493536.7:ENST00000667091.1:ENST00000586846.2:ENST00000448136.5:ENST00000668511.1:ENST00000590435.5:ENST00000587838.2	lncRNA	lncRNA	lncRNA	lncRNA	5	98	2	2.39519	2.7719449999999997	3.1487	0.00401951	6.87038e-4	0.0578189	0.024008
chr7	127914992	127915092	3405047	0	+	0.48	(0.476,0.515]	chr7	318161	98	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000465900.5:ENST00000486037.1:ENST00000484767.5:ENST00000492840.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	138	2	2.48496	2.7716849999999997	3.05841	0.00143091	4.54034e-5	0.0340925	0.00547944
chr1	96726388	96726487	167987	0	+	0.555556	(0.515,0.57]	chr1	18215	24	INTRON	INTRON	PTBP2	ENSG00000117569.19	ENST00000482253.5:ENST00000675735.1:ENST00000609116.5:ENST00000674951.1:ENST00000675080.1:ENST00000426398.3:ENST00000460706.5:ENST00000370197.5:ENST00000370198.5:ENST00000476419.5:ENST00000676292.1:ENST00000676096.1:ENST00000675365.1:ENST00000674579.1:ENST00000675401.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	104	2	2.20482	2.771605	3.33839	0.00129351	1.61956e-4	0.0333764	0.0116382
chr9	94171671	94171771	4161123	0	+	0.51	(0.476,0.515]	chr9	379417	49	INTRON	INTRON	MIRLET7A1HG	ENSG00000269929.4	ENST00000652769.1:ENST00000652620.1:ENST00000602703.1:ENST00000660581.1	lncRNA	lncRNA	lncRNA	lncRNA	5	90	2	2.29359	2.771595	3.2496	0.00584957	3.39435e-4	0.0689807	0.0170719
chr11	33708543	33708642	4941049	0	-	0.424242	(0.408,0.44]	chr11	462894	57	UTR3	UTR3:EXON_MRNA	CD59	ENSG00000085063.17	ENST00000642928.2:ENST00000651785.1:ENST00000652678.1	protein_coding	protein_coding	protein_coding	protein_coding	12	157	2	1.79857	2.771475	3.74438	0.00359183	2.69617e-5	0.0551259	0.00430583
chr7	10621550	10621650	3482995	0	-	0.37	(0.35,0.378]	chr7	325772	596	INTRON	INTRON	MGC4859	ENSG00000283117.1	ENST00000634803.1	lncRNA	lncRNA	lncRNA	lncRNA	5	82	2	1.90041	2.771465	3.64252	0.0145936	8.02255e-4	0.105992	0.0262199
chr17	30150666	30150764	6587729	0	+	0.397959	(0.378,0.408]	chr17	640567	1	INTRON	INTRON	NSRP1	ENSG00000126653.18	ENST00000540900.7:ENST00000612959.4:ENST00000247026.10:ENST00000577289.6:ENST00000584154.5:ENST00000394826.8:ENST00000475652.5:ENST00000584317.5:ENST00000585881.5:ENST00000467446.6:ENST00000580103.6:ENST00000581048.5:ENST00000588614.1:ENST00000589608.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	57	2	2.16303	2.7713650000000003	3.3797	0.0252473	0.00154501	0.12011	0.0362716
chr22	21568477	21568577	7481712	0	+	0.38	(0.378,0.408]	chr22	763231	1	SS5_PROX	SS5_PROX:INTRON	UBE2L3	ENSG00000185651.16	ENST00000458578.6:ENST00000545681.2:ENST00000696046.1:ENST00000342192.9:ENST00000496722.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	57	2	2.21238	2.7713200000000002	3.33026	0.0218124	0.00189824	0.11491	0.0402736
chr16	22320994	22321091	6321784	0	+	0.505155	(0.476,0.515]	chr16	605260	17	INTRON	INTRON	POLR3E	ENSG00000058600.16	ENST00000615879.4:ENST00000299853.10:ENST00000564209.5:ENST00000418581.6:ENST00000359210.8:ENST00000564061.5:ENST00000564750.5:ENST00000569757.1:ENST00000569787.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	65	2	2.25138	2.7710600000000003	3.29074	0.00692374	0.00272563	0.0753208	0.0467523
chr2	28755173	28755273	724683	0	+	0.5	(0.476,0.515]	chr2	83720	26	INTRON	INTRON	PPP1CB	ENSG00000213639.10	ENST00000455580.5:ENST00000420282.5:ENST00000441461.5:ENST00000427786.1:ENST00000358506.6:ENST00000296122.10:ENST00000395366.3:ENST00000464273.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	65	2	2.25138	2.7710600000000003	3.29074	0.00692374	0.00272563	0.0753208	0.0467523
chr10	68756104	68756172	4442630	0	+	0.323529	(0.32,0.35]	chr10	409659	2	SS3_PROX	SS3_PROX:INTRON	CCAR1	ENSG00000060339.14	ENST00000630771.2:ENST00000543719.5:ENST00000541012.5:ENST00000265872.11:ENST00000539539.5:ENST00000543229.5:ENST00000536012.5:ENST00000543225.5:ENST00000540210.5:ENST00000483264.1:ENST00000479143.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	86	2	2.42352	2.771045	3.11857	0.0122807	5.76454e-4	0.091087	0.0218153
chr7	156845882	156845982	3687545	0	-	0.33	(0.32,0.35]	chr7	342096	86	INTRON	INTRON	LMBR1	ENSG00000105983.23	ENST00000353442.10:ENST00000415428.5:ENST00000454132.5:ENST00000434503.5:ENST00000430278.5:ENST00000434278.5:ENST00000444719.5:ENST00000461469.5:ENST00000414218.1:ENST00000434453.1:ENST00000498034.5:ENST00000433968.5:ENST00000485985.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	76	2	2.3011	2.770985	3.24087	0.00617969	0.00420518	0.0713552	0.0572185
chr19	38836633	38836721	7180691	0	-	0.375	(0.35,0.378]	chr19	725842	4	UTR3	UTR3:EXON_MRNA	HNRNPL	ENSG00000104824.18	ENST00000221419.10:ENST00000647557.1:ENST00000595443.5:ENST00000388749.7:ENST00000601449.5:ENST00000595804.5:ENST00000597731.1:ENST00000595164.5:ENST00000600873.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	185	2	2.6658	2.7709599999999996	2.87612	7.55807e-4	3.5348e-5	0.0251563	0.00474911
chr11	86950346	86950445	5015243	0	-	0.323232	(0.32,0.35]	chr11	473062	48	UTR3	UTR3:EXON_MRNA	FZD4	ENSG00000174804.4	ENST00000531380.2	protein_coding	protein_coding	protein_coding	protein_coding	4	76	2	2.22655	2.77094	3.31533	0.00823133	0.00323121	0.0812969	0.0507087
chr19	49092697	49092795	7088450	0	+	0.418367	(0.408,0.44]	chr19	709545	18	INTRON	INTRON	SNRNP70	ENSG00000104852.15	ENST00000601065.5:ENST00000598984.5:ENST00000598441.6:ENST00000401730.5:ENST00000221448.9:ENST00000595231.5:ENST00000601411.1:ENST00000599687.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	139	2	2.58583	2.77089	2.95595	9.38868e-4	8.31527e-5	0.0280776	0.00767539
chr1	173861582	173861681	587027	0	-	0.444444	(0.44,0.476]	chr1	70634	19	INTRON	INTRON	GAS5	ENSG00000234741.9	ENST00000651080.1	lncRNA	lncRNA	lncRNA	lncRNA	4	76	2	2.72256	2.77076	2.81896	0.0120766	0.00111786	0.0962311	0.0306954
chr16	74647132	74647232	6525602	0	-	0.33	(0.32,0.35]	chr16	631900	20	INTRON	INTRON	RFWD3	ENSG00000168411.14	ENST00000361070.9:ENST00000571750.5:ENST00000575281.1:ENST00000572337.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	87	2	2.12121	2.770735	3.42026	0.00650424	0.00219805	0.0735144	0.0417893
chr1	23768431	23768531	401197	0	-	0.49	(0.476,0.515]	chr1	48105	69	INTRON	INTRON	ELOA-AS1	ENSG00000236810.7	ENST00000655402.1:ENST00000427796.6:ENST00000686609.1:ENST00000664563.2:ENST00000652963.1	lncRNA	lncRNA	lncRNA	lncRNA	6	107	2	1.91368	2.770725	3.62777	0.0135123	4.68477e-5	0.101363	0.00593131
chr1	31930434	31930533	414356	0	-	0.373737	(0.35,0.378]	chr1	49925	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PTP4A2	ENSG00000184007.22	ENST00000647444.2:ENST00000649841.1:ENST00000468531.1:ENST00000534796.5:ENST00000532289.1:ENST00000526960.1:ENST00000524384.5:ENST00000528840.1:ENST00000494444.2:ENST00000529477.5:ENST00000533408.1:ENST00000475464.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	45	2	2.32443	2.7706	3.21677	0.0544216	0.00313804	0.164972	0.0514466
chr15	60363022	60363122	6194973	0	-	0.32	(0.28,0.32]	chr15	590305	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	ANXA2	ENSG00000182718.18	ENST00000396024.7:ENST00000559818.6:ENST00000679109.1:ENST00000676687.1:ENST00000558169.6:ENST00000557906.6:ENST00000558558.6:ENST00000559113.6:ENST00000559780.6:ENST00000559956.6:ENST00000560468.6:ENST00000678870.1:ENST00000678061.1:ENST00000678450.1:ENST00000677968.1:ENST00000451270.7:ENST00000558985.6:ENST00000678796.1:ENST00000559647.2:ENST00000332680.8:ENST00000560014.5:ENST00000504475.6:ENST00000421017.6:ENST00000559176.5:ENST00000560466.5:ENST00000558132.5:ENST00000561022.5:ENST00000560367.6:ENST00000558503.6:ENST00000558998.5:ENST00000559559.5:ENST00000560165.5:ENST00000560389.5:ENST00000559725.5:ENST00000559350.5:ENST00000558986.5:ENST00000677258.1:ENST00000559467.5:ENST00000561445.5:ENST00000557937.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	53	2	2.18975	2.770415	3.35108	0.0776042	0.00221345	0.196285	0.0435144
chr1	54278038	54278138	462472	0	-	0.54	(0.515,0.57]	chr1	55761	195	INTRON	INTRON	SSBP3	ENSG00000157216.16	ENST00000610401.5:ENST00000357475.9:ENST00000371319.8:ENST00000417664.7:ENST00000533946.6:ENST00000326956.12:ENST00000371320.8:ENST00000426150.5:ENST00000533209.5:ENST00000525990.1:ENST00000528787.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	47	2	2.39351	2.7704050000000002	3.1473	0.0100431	0.00397184	0.0881096	0.0549214
chr2	113468584	113468681	853788	0	+	0.28866000000000003	(0.28,0.32]	chr2	95826	1	EXON_MRNA	EXON_MRNA:INTRON	CBWD2	ENSG00000136682.16	ENST00000259199.9:ENST00000416503.6:ENST00000358604.7:ENST00000456188.5:ENST00000479583.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	93	2	2.56765	2.77032	2.97299	0.00835086	0.00126436	0.0774402	0.0329641
chr1	65063725	65063825	475527	0	-	0.46	(0.44,0.476]	chr1	57245	55	INTRON	INTRON	JAK1	ENSG00000162434.13	ENST00000672434.1:ENST00000671954.1:ENST00000673502.1:ENST00000672751.1:ENST00000672099.1	protein_coding	protein_coding	protein_coding	protein_coding	8	122	2	2.06139	2.770295	3.4792	0.00297288	1.09781e-4	0.0501309	0.00942675
chr5	138755862	138755961	2497327	0	+	0.464646	(0.44,0.476]	chr5	238698	3	INTRON	INTRON	CTNNA1	ENSG00000044115.21	ENST00000517980.5:ENST00000522227.5:ENST00000524127.5:ENST00000523912.5:ENST00000627109.2:ENST00000520339.5:ENST00000521724.5:ENST00000302763.12:ENST00000518910.5:ENST00000521941.1:ENST00000519309.5:ENST00000519113.5:ENST00000520158.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	88	2	2.41757	2.770275	3.12298	0.00417342	4.66209e-4	0.057064	0.0195589
chr17	82646098	82646197	6853670	0	-	0.313131	(0.28,0.32]	chr17	679390	17	INTRON	INTRON	WDR45B	ENSG00000141580.16	ENST00000392325.9:ENST00000572583.5:ENST00000573616.5:ENST00000571817.5:ENST00000574828.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	114	2	2.56765	2.7702549999999997	2.97286	0.00835086	3.34495e-4	0.0774402	0.0162792
chr7	75460010	75460110	3558667	0	-	0.36	(0.35,0.378]	chr7	331545	174	INTRON	INTRON	POM121C	ENSG00000272391.6	ENST00000615331.5:ENST00000398379.2	protein_coding	protein_coding	protein_coding	protein_coding	5	85	2	2.50237	2.7702549999999997	3.03814	0.00767003	0.00111137	0.075364	0.0305384
chr16	70257233	70257333	6510150	0	-	0.48	(0.476,0.515]	chr16	630524	15	EXON_MRNA	EXON_MRNA:INTRON	AARS1	ENSG00000090861.17	ENST00000674963.1:ENST00000675643.1:ENST00000675917.1:ENST00000674691.1:ENST00000261772.13:ENST00000675569.1:ENST00000676209.1:ENST00000676211.1:ENST00000676040.1:ENST00000675953.1:ENST00000675691.1:ENST00000676004.1:ENST00000675270.1:ENST00000675403.1:ENST00000676212.1:ENST00000675045.1:ENST00000675035.1:ENST00000676168.1:ENST00000674652.1:ENST00000675133.1:ENST00000675120.1:ENST00000674811.1:ENST00000674512.1:ENST00000675853.1:ENST00000565361.3:ENST00000676247.1:ENST00000674848.1:ENST00000674962.1:ENST00000675371.1:ENST00000675986.1:ENST00000674768.1:ENST00000675297.1:ENST00000675751.1:ENST00000564359.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	19	315	2	2.61472	2.7702299999999997	2.92574	2.32531e-4	1.35586e-6	0.013966	6.867e-4
chr7	75414149	75414246	3338229	0	+	0.536082	(0.515,0.57]	chr7	310814	15	EXON_LNCRNA	EXON_LNCRNA:SS3_PROX:INTRON	NSUN5P1	ENSG00000223705.10	ENST00000691741.1:ENST00000687920.1:ENST00000393633.6:ENST00000687621.1:ENST00000689022.1:ENST00000691865.1:ENST00000688076.1:ENST00000693166.1:ENST00000457988.5:ENST00000689132.1:ENST00000691132.1:ENST00000692954.1:ENST00000455158.5:ENST00000421140.6:ENST00000693244.1:ENST00000422386.5:ENST00000464979.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	17	209	2	1.88995	2.770165	3.65038	0.00112638	9.3456e-7	0.0308455	6.01421e-4
chr16	74964700	74964795	6527089	0	-	0.463158	(0.44,0.476]	chr16	632153	11	INTRON	INTRON	WDR59	ENSG00000103091.15	ENST00000262144.11:ENST00000616369.4:ENST00000536050.5:ENST00000568462.5:ENST00000568323.5:ENST00000563111.2:ENST00000562331.5:ENST00000564859.1:ENST00000569421.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	56	2	2.67572	2.7701200000000004	2.86452	0.0212064	0.00159222	0.113017	0.0367961
chr1	52339228	52339327	103599	0	+	0.323232	(0.32,0.35]	chr1	13558	9	INTRON	INTRON	ZFYVE9	ENSG00000157077.16	ENST00000287727.8:ENST00000371591.2:ENST00000357206.6	protein_coding	protein_coding	protein_coding	protein_coding	2	47	2	2.57263	2.770045	2.96746	0.0312297	0.00815799	0.13151	0.0810802
chr19	32600550	32600646	7168842	0	-	0.34375	(0.32,0.35]	chr19	724336	1	INTRON	INTRON	ANKRD27	ENSG00000105186.16	ENST00000306065.9	protein_coding	protein_coding	protein_coding	protein_coding	2	47	2	2.57263	2.770045	2.96746	0.0312297	0.00815799	0.13151	0.0810802
chr17	47150513	47150612	6788989	0	-	0.434343	(0.408,0.44]	chr17	669573	62	INTRON	INTRON	CDC27	ENSG00000004897.12	ENST00000066544.8:ENST00000531206.5:ENST00000533415.5:ENST00000527547.5:ENST00000526866.5:ENST00000525495.6:ENST00000574304.5:ENST00000575830.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	41	2	2.51492	2.770025	3.02513	0.0329839	0.0059965	0.133816	0.0700606
chr6	38800398	38800497	2861269	0	+	0.414141	(0.408,0.44]	chr6	270403	84	INTRON	INTRON	DNAH8	ENSG00000124721.18	ENST00000327475.11:ENST00000449981.6:ENST00000359357.7	protein_coding	protein_coding	protein_coding	protein_coding	2	41	2	2.51492	2.770025	3.02513	0.0329839	0.0059965	0.133816	0.0700606
chr1	224414816	224414914	645237	0	-	0.346939	(0.32,0.35]	chr1	76269	11	INTRON	INTRON	WDR26	ENSG00000162923.17	ENST00000414423.9:ENST00000678917.1:ENST00000651911.2:ENST00000678879.1:ENST00000486652.5:ENST00000678555.1:ENST00000443112.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	48	2	2.30673	2.7700199999999997	3.23331	0.0584434	0.00315414	0.167723	0.0515261
chr17	31265938	31266038	6592901	0	+	0.33	(0.32,0.35]	chr17	641260	2	INTRON	INTRON	NF1	ENSG00000196712.20	ENST00000696138.1:ENST00000356175.7:ENST00000691014.1:ENST00000358273.9:ENST00000579081.5:ENST00000456735.6:ENST00000493220.5:ENST00000687863.1:ENST00000696140.1:ENST00000696141.1:ENST00000581113.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	48	2	2.30673	2.7700199999999997	3.23331	0.0584434	0.00315414	0.167723	0.0515261
chr11	5343146	5343239	4896646	0	-	0.462366	(0.44,0.476]	chr11	459168	6	CDS	CDS:EXON_MRNA:INTRON	HBG2:ENSG00000239920:HBE1:OR51B5	ENSG00000196565.15:ENSG00000239920.2:ENSG00000213931.7:ENSG00000167355.8	ENST00000380252.6:ENST00000380259.7:ENST00000643199.1:ENST00000292896.3:ENST00000380237.5:ENST00000420726.6:ENST00000420465.6:ENST00000415970.6:ENST00000300773.3:ENST00000418729.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:nonsense_mediated_decay:processed_transcript	9	157	2	2.45747	2.76999	3.08251	6.55527e-4	6.69786e-5	0.0232396	0.00721005
chr10	6165909	6166009	4386204	0	+	0.44	(0.408,0.44]	chr10	404834	15	INTRON	INTRON	PFKFB3	ENSG00000170525.21	ENST00000379789.8:ENST00000536985.6:ENST00000639949.1	protein_coding	protein_coding	protein_coding	protein_coding	4	74	2	2.75707	2.7699800000000003	2.78289	0.00317496	0.0022785	0.0503542	0.0437013
chr10	63235471	63235571	4633082	0	-	0.33	(0.32,0.35]	chr10	426215	151	INTRON	INTRON	JMJD1C	ENSG00000171988.20	ENST00000399262.7:ENST00000402544.5:ENST00000542921.5:ENST00000469152.5:ENST00000489372.4:ENST00000633035.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	47	2	2.6321	2.76998	2.90786	0.0268	0.00993008	0.123349	0.0877296
chr19	15372430	15372514	7147637	0	-	0.333333	(0.32,0.35]	chr19	722032	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	AKAP8	ENSG00000105127.10	ENST00000269701.7:ENST00000680461.1:ENST00000681812.1:ENST00000680336.1:ENST00000680245.1:ENST00000681018.1:ENST00000679798.1:ENST00000598597.7:ENST00000599883.2:ENST00000537303.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	47	2	2.6321	2.76998	2.90786	0.0268	0.00993008	0.123349	0.0877296
chr7	152825422	152825522	3451185	0	+	0.49	(0.476,0.515]	chr7	322566	3	SS5_PROX	SS5_PROX:INTRON	ACTR3B	ENSG00000133627.18	ENST00000377776.7:ENST00000256001.13:ENST00000397282.2:ENST00000479402.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	68	2	2.34867	2.76993	3.19119	0.00539703	0.00325748	0.0644048	0.0524329
chr22	19069422	19069522	7551483	0	-	0.36	(0.35,0.378]	chr22	771897	8	INTRON	INTRON	DGCR2	ENSG00000070413.20	ENST00000537045.5:ENST00000545799.5:ENST00000263196.12:ENST00000389262.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	45	2	2.6498	2.769915	2.89003	0.0210137	0.0122391	0.122348	0.0910127
chr7	157382976	157383075	3455777	0	+	0.353535	(0.35,0.378]	chr7	323107	2	INTRON	INTRON	DNAJB6	ENSG00000105993.15	ENST00000429029.6:ENST00000262177.9:ENST00000417758.5:ENST00000459889.5:ENST00000443280.5:ENST00000634080.1:ENST00000468928.5:ENST00000465908.5:ENST00000487480.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	45	2	2.6498	2.769915	2.89003	0.0210137	0.0122391	0.122348	0.0910127
chr2	96251509	96251609	1180025	0	-	0.36	(0.35,0.378]	chr2	126159	31	UTR3	UTR3:EXON_MRNA	TMEM127	ENSG00000135956.9	ENST00000258439.8	protein_coding	protein_coding	protein_coding	protein_coding	4	72	2	1.91706	2.76989	3.62272	0.026412	5.64719e-4	0.122506	0.021704
chr1	145934815	145934915	540829	0	-	0.45	(0.44,0.476]	chr1	63432	15	UTR3	UTR3:EXON_MRNA	LIX1L	ENSG00000271601.4	ENST00000604000.4	protein_coding	protein_coding	protein_coding	protein_coding	3	55	2	2.27304	2.7698650000000002	3.26669	0.0158915	0.00305435	0.109464	0.0493883
chr9	131444428	131444528	4217479	0	+	0.53	(0.515,0.57]	chr9	386751	1	SS5_PROX	SS5_PROX:INTRON	PRRC2B	ENSG00000288701.1	ENST00000684596.1:ENST00000683519.1:ENST00000682501.1	protein_coding	protein_coding	protein_coding	protein_coding	3	30	2	1.49871	2.769785	4.04086	0.0770828	0.0197045	0.196285	0.120063
chr1	31909637	31909737	414137	0	-	0.43	(0.408,0.44]	chr1	49873	2	SS5_PROX	SS5_PROX:INTRON	ENSG00000269967:PTP4A2	ENSG00000269967.1:ENSG00000184007.22	ENST00000602889.1:ENST00000647444.2:ENST00000602725.5:ENST00000649841.1:ENST00000457805.6:ENST00000489313.1:ENST00000602683.5:ENST00000470404.5:ENST00000532001.6	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA	2	41	2	2.71911	2.769765	2.82042	0.0189489	0.0120121	0.108861	0.0962115
chr1	53814011	53814110	460363	0	-	0.434343	(0.408,0.44]	chr1	55420	39	INTRON	INTRON	NDC1	ENSG00000058804.12	ENST00000371429.4	protein_coding	protein_coding	protein_coding	protein_coding	2	41	2	2.71911	2.769765	2.82042	0.0189489	0.0120121	0.108861	0.0962115
chr22	19513950	19514049	7477189	0	+	0.30303	(0.28,0.32]	chr22	762458	49	INTRON	INTRON	CDC45	ENSG00000093009.11	ENST00000407835.6:ENST00000437685.6:ENST00000438587.6:ENST00000672837.1:ENST00000263201.7:ENST00000404724.7:ENST00000471470.1:ENST00000671972.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	84	2	2.03106	2.76971	3.50836	0.0208123	0.00117393	0.111549	0.0316446
chr7	102381031	102381131	3371250	0	+	0.49	(0.476,0.515]	chr7	315446	5	INTRON	INTRON	PRKRIP1	ENSG00000128563.13	ENST00000477886.5:ENST00000469763.5:ENST00000482549.5:ENST00000496391.5:ENST00000482465.5:ENST00000462601.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	65	2	2.16306	2.76969	3.37632	0.00973468	0.00195267	0.0877284	0.0400465
chr7	139422619	139422712	3438232	0	+	0.376344	(0.35,0.378]	chr7	320387	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	LUC7L2	ENSG00000146963.18	ENST00000619796.4:ENST00000354926.9:ENST00000456182.5:ENST00000263545.7:ENST00000498518.1:ENST00000482860.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	160	2	2.46877	2.769655	3.07054	3.99709e-4	2.57526e-4	0.0179547	0.0148796
chr2	111479906	111479983	1211657	0	-	0.454545	(0.44,0.476]	chr2	128933	1	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	MIR4435-2HG	ENSG00000172965.17	ENST00000645030.2:ENST00000642191.1:ENST00000673798.1:ENST00000645051.2:ENST00000673649.1:ENST00000669658.1:ENST00000669917.1:ENST00000661559.1:ENST00000653687.1:ENST00000667670.1:ENST00000609220.2:ENST00000656760.1:ENST00000609902.6:ENST00000666683.1:ENST00000674070.1:ENST00000662335.1:ENST00000664422.1:ENST00000673775.1:ENST00000674092.1:ENST00000673958.1:ENST00000658936.1:ENST00000662635.1:ENST00000666204.1:ENST00000659458.1:ENST00000664443.1:ENST00000670295.1:ENST00000661655.1:ENST00000666390.1:ENST00000659079.1:ENST00000660442.1:ENST00000664009.1:ENST00000439362.6:ENST00000654473.1:ENST00000664999.1:ENST00000673728.1:ENST00000659791.1:ENST00000666144.1:ENST00000659933.1:ENST00000670715.1:ENST00000653568.1:ENST00000643013.1:ENST00000673866.1:ENST00000443467.6:ENST00000669875.1:ENST00000673653.1:ENST00000673988.1:ENST00000661945.1:ENST00000669515.1:ENST00000431385.6:ENST00000656416.1:ENST00000674037.1:ENST00000432818.5:ENST00000674013.1:ENST00000444301.5:ENST00000673964.1:ENST00000673845.1:ENST00000673756.1:ENST00000673960.1:ENST00000673804.1:ENST00000673632.1:ENST00000453478.2:ENST00000673937.1:ENST00000673654.1:ENST00000409569.2:ENST00000674087.1:ENST00000419736.5:ENST00000673840.1:ENST00000674045.1:ENST00000673821.1:ENST00000643766.1:ENST00000308604.5:ENST00000604981.5:ENST00000673894.1:ENST00000442293.5:ENST00000441075.1:ENST00000673878.1:ENST00000439494.1	lncRNA	lncRNA	lncRNA	lncRNA	3	56	2	2.51554	2.7696	3.02366	0.00777207	0.00603307	0.0757731	0.0700813
chr4	56422186	56422286	2151525	0	-	0.48	(0.476,0.515]	chr4	211799	140	INTRON	INTRON	PPAT	ENSG00000128059.8	ENST00000264220.6:ENST00000510643.5:ENST00000507724.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	41	2	2.65268	2.7694900000000002	2.8863	0.0201975	0.0111679	0.121243	0.0877435
chr1	167980406	167980505	248930	0	+	0.434343	(0.408,0.44]	chr1	29564	50	INTRON	INTRON	DCAF6	ENSG00000143164.16	ENST00000450548.5:ENST00000470919.5:ENST00000432587.6:ENST00000367843.7:ENST00000470721.5:ENST00000367840.4:ENST00000312263.10:ENST00000455334.5:ENST00000491067.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	140	2	2.41003	2.76945	3.12887	0.00211327	2.84658e-5	0.0415897	0.00423282
chr1	100087738	100087838	515401	0	-	0.35	(0.32,0.35]	chr1	60429	2	SS5_PROX	SS5_PROX:INTRON	SASS6	ENSG00000156876.10	ENST00000462159.1:ENST00000287482.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	48	2	2.64129	2.76936	2.89743	0.0222819	0.0127608	0.124303	0.0926667
chr19	21299730	21299829	7158339	0	-	0.333333	(0.32,0.35]	chr19	723652	46	INTRON	INTRON	ZNF708	ENSG00000182141.10	ENST00000356929.3:ENST00000598046.5:ENST00000601295.1:ENST00000602023.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	48	2	2.64129	2.76936	2.89743	0.0222819	0.0127608	0.124303	0.0926667
chr3	6554191	6554291	1356783	0	+	0.38	(0.378,0.408]	chr3	142508	411	INTRON	INTRON	ENSG00000189229	ENSG00000189229.12	ENST00000660158.1:ENST00000433639.1:ENST00000655754.1:ENST00000653839.1:ENST00000662846.1:ENST00000659876.1:ENST00000414438.2:ENST00000658468.1:ENST00000414603.1:ENST00000669512.1:ENST00000667028.1:ENST00000655541.1:ENST00000668643.1:ENST00000671568.1:ENST00000671036.1:ENST00000669798.1:ENST00000655753.1:ENST00000655856.1:ENST00000658398.1:ENST00000661518.1:ENST00000661279.1:ENST00000655495.1:ENST00000663041.1:ENST00000659827.1:ENST00000667716.1:ENST00000662508.1:ENST00000668416.1:ENST00000658133.1:ENST00000659651.1:ENST00000342990.4:ENST00000660054.1:ENST00000671370.1	lncRNA	lncRNA	lncRNA	lncRNA	9	160	2	2.69638	2.7693399999999997	2.8423	2.84247e-4	1.79607e-4	0.015495	0.0116696
chr16	56386907	56387003	6490884	0	-	0.489583	(0.476,0.515]	chr16	627679	5	INTRON	INTRON	AMFR	ENSG00000159461.15	ENST00000290649.10:ENST00000492830.5:ENST00000567738.1:ENST00000568762.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	43	2	2.13854	2.769285	3.40003	0.0776563	0.00139193	0.196285	0.0341261
chr5	273854	273951	2312640	0	+	0.28866000000000003	(0.28,0.32]	chr5	223710	6	INTRON	INTRON	PDCD6	ENSG00000249915.9	ENST00000614778.4:ENST00000618970.4:ENST00000513582.5:ENST00000264933.9:ENST00000505221.5:ENST00000507528.5:ENST00000509581.5:ENST00000505526.1:ENST00000507473.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	115	2	2.35314	2.76924	3.18534	0.00539714	8.08132e-4	0.066545000000000007	0.0263656
chr3	13350988	13351087	1617888	0	-	0.353535	(0.35,0.378]	chr3	167135	2	EXON_MRNA	EXON_MRNA:INTRON	NUP210	ENSG00000132182.13	ENST00000254508.7:ENST00000695490.1:ENST00000695491.1:ENST00000420141.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	73	2	1.92704	2.7691850000000002	3.61133	0.0228255	9.14099e-4	0.125469	0.0278396
chr4	67484570	67484670	2152888	0	-	0.43	(0.408,0.44]	chr4	211913	92	INTRON	INTRON	CENPC	ENSG00000145241.11	ENST00000273853.11:ENST00000513216.5:ENST00000506882.5:ENST00000515140.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	56	2	1.94273	2.7691850000000002	3.59564	0.0456237	5.73354e-4	0.149888	0.0217398
chr7	105341060	105341160	3603427	0	-	0.54	(0.515,0.57]	chr7	336161	341	INTRON	INTRON	SRPK2	ENSG00000135250.17	ENST00000393651.8:ENST00000482897.5:ENST00000460391.5:ENST00000462282.5:ENST00000465112.5:ENST00000482862.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	65	2	1.86362	2.769075	3.67453	0.0164561	3.27949e-4	0.102235	0.0160995
chr4	110189253	110189353	2227641	0	-	0.53	(0.515,0.57]	chr4	218024	833	INTRON	INTRON	ELOVL6	ENSG00000170522.10	ENST00000394607.7:ENST00000302274.8:ENST00000514184.5:ENST00000506625.5:ENST00000506461.1:ENST00000503885.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	91	2	2.69048	2.76892	2.84736	8.78655e-4	4.72534e-4	0.0269932	0.0201458
chr1	113976383	113976482	192289	0	+	0.363636	(0.35,0.378]	chr1	21240	30	UTR3	UTR3:EXON_MRNA	HIPK1	ENSG00000163349.22	ENST00000426820.7:ENST00000626993.2:ENST00000369558.5:ENST00000340480.8:ENST00000361587.3	protein_coding	protein_coding	protein_coding	protein_coding	3	61	2	2.48623	2.768795	3.05136	0.00938784	0.00578894	0.0817766	0.0684334
chr5	57197284	57197384	2358288	0	+	0.36	(0.35,0.378]	chr5	227562	205	INTRON	INTRON	GPBP1	ENSG00000062194.16	ENST00000424459.7:ENST00000514387.6:ENST00000506184.7:ENST00000511209.5	protein_coding	protein_coding	protein_coding	protein_coding	3	61	2	2.48623	2.768795	3.05136	0.00938784	0.00578894	0.0817766	0.0684334
chr1	17421702	17421802	384802	0	-	0.51	(0.476,0.515]	chr1	45472	1	SS5_PROX	SS5_PROX:INTRON	RCC2	ENSG00000179051.14	ENST00000375436.9:ENST00000375433.3	protein_coding	protein_coding	protein_coding	protein_coding	6	83	2	1.73294	2.768745	3.80455	0.0174121	3.04782e-4	0.112632	0.0161236
chr7	4988633	4988733	3271189	0	+	0.47	(0.44,0.476]	chr7	304035	2	SS3_PROX	SS3_PROX:INTRON	RNF216P1	ENSG00000196204.12	ENST00000406089.6:ENST00000477090.5:ENST00000404006.5:ENST00000403969.5:ENST00000494947.5:ENST00000406608.2:ENST00000405396.2:ENST00000464479.1:ENST00000466622.1	lncRNA	lncRNA	lncRNA	lncRNA	4	73	2	2.55649	2.768745	2.981	0.00670547	9.31193e-4	0.0707084	0.0278746
chr10	30334608	30334707	4587495	0	-	0.40404	(0.378,0.408]	chr10	422969	76	INTRON	INTRON	MTPAP	ENSG00000107951.15	ENST00000263063.9:ENST00000488290.5:ENST00000417581.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	70	2	2.20712	2.7686900000000003	3.33026	0.00978751	0.00189824	0.0835427	0.0402736
chr15	68095483	68095583	6056368	0	+	0.37	(0.35,0.378]	chr15	576567	72	INTRON	INTRON	PIAS1	ENSG00000033800.14	ENST00000564915.5:ENST00000249636.11:ENST00000562190.1:ENST00000545237.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	71	2	2.24196	2.76863	3.2953	0.00744693	0.0031465	0.0772645	0.0500431
chr16	21429722	21429820	6460611	0	-	0.418367	(0.408,0.44]	chr16	623218	39	INTRON	INTRON	NPIPB3	ENSG00000169246.16	ENST00000521589.5:ENST00000534903.1:ENST00000545358.5:ENST00000543368.1:ENST00000544154.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	9	149	2	2.32949	2.76856	3.20763	0.00110536	5.89253e-5	0.0306086	0.00630001
chr20	298798	298893	7218728	0	+	0.431579	(0.408,0.44]	chr20	733471	1	UTR3	UTR3:EXON_MRNA	ZCCHC3	ENSG00000247315.4	ENST00000500893.4	protein_coding	protein_coding	protein_coding	protein_coding	4	72	2	2.51198	2.768555	3.02513	0.0059965	0.00288187	0.0700606	0.0475859
chr16	10483042	10483141	6287266	0	+	0.373737	(0.35,0.378]	chr16	602048	9	UTR3	UTR3:EXON_MRNA	ATF7IP2	ENSG00000166669.14	ENST00000396559.5:ENST00000396560.6:ENST00000562102.6:ENST00000568027.5:ENST00000324570.9:ENST00000356427.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	151	2	2.55441	2.768525	2.98264	0.00126698	8.27558e-5	0.0325433	0.00765891
chr22	49649128	49649228	7602579	0	-	0.49	(0.476,0.515]	chr22	778594	217	INTRON	INTRON	MIR3667HG	ENSG00000188511.13	ENST00000414287.5:ENST00000416411.1:ENST00000689875.1:ENST00000400023.5:ENST00000405854.5	lncRNA	lncRNA	lncRNA	lncRNA	3	54	2	2.48551	2.768515	3.05152	0.00756632	0.0064848	0.0773151	0.0699952
chr6	35916865	35916965	3088784	0	-	0.53	(0.515,0.57]	chr6	288898	115	INTRON	INTRON	SRPK1	ENSG00000096063.16	ENST00000373825.7:ENST00000423325.6:ENST00000346162.10:ENST00000361690.7:ENST00000510290.5:ENST00000508473.5:ENST00000512445.5:ENST00000513367.1:ENST00000507909.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	80	2	2.11724	2.76851	3.41978	0.0110335	1.03805e-4	0.0927187	0.00915599
chr11	841819	841913	4890020	0	-	0.595745	(0.57,1]	chr11	457957	10	INTRON	INTRON	POLR2L	ENSG00000177700.6	ENST00000534030.1:ENST00000322028.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	32	2	2.66801	2.768465	2.86892	0.0169968	0.00125753	0.110899	0.0323608
chr19	15296246	15296346	7147043	0	-	0.36	(0.35,0.378]	chr19	721965	159	INTRON	INTRON	BRD4	ENSG00000141867.19	ENST00000679869.1:ENST00000360016.9:ENST00000594841.5:ENST00000597315.5:ENST00000601941.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	183	2	2.68678	2.768415	2.85005	3.07301e-4	1.1382e-4	0.0161362	0.0091402
chr19	10964607	10964706	7015592	0	+	0.535354	(0.515,0.57]	chr19	697162	25	INTRON	INTRON	SMARCA4	ENSG00000127616.20	ENST00000644737.1:ENST00000642726.1:ENST00000646484.1:ENST00000643549.1:ENST00000643296.1:ENST00000647230.1:ENST00000642628.1:ENST00000646510.1:ENST00000429416.8:ENST00000644760.1:ENST00000344626.10:ENST00000646693.2:ENST00000645460.1:ENST00000541122.6:ENST00000589677.5:ENST00000444061.8:ENST00000590574.6	protein_coding	protein_coding	protein_coding	protein_coding	4	63	2	2.73258	2.76829	2.804	0.00260192	0.00215855	0.0470772	0.0417866
chr19	4024717	4024815	7001363	0	+	0.428571	(0.408,0.44]	chr19	694414	2	INTRON	INTRON	PIAS4	ENSG00000105229.7	ENST00000262971.3:ENST00000599999.5:ENST00000600566.5:ENST00000596144.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	42	2	2.27698	2.76823	3.25948	0.0583528	0.00246454	0.167723	0.0459102
chr2	53950780	53950880	1120376	0	-	0.44	(0.408,0.44]	chr2	120102	11	INTRON	INTRON	PSME4	ENSG00000068878.15	ENST00000404125.6:ENST00000389993.7:ENST00000481518.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	42	2	2.27698	2.76823	3.25948	0.0583528	0.00246454	0.167723	0.0459102
chr20	50681935	50682035	7355347	0	-	0.42	(0.408,0.44]	chr20	750067	452	INTRON	INTRON	RIPOR3	ENSG00000042062.13	ENST00000327979.8	protein_coding	protein_coding	protein_coding	protein_coding	2	42	2	2.27698	2.76823	3.25948	0.0583528	0.00246454	0.167723	0.0459102
chr3	128759634	128759734	1497545	0	+	0.44	(0.408,0.44]	chr3	156330	329	INTRON	INTRON	RAB7A	ENSG00000075785.14	ENST00000676214.1:ENST00000675864.1:ENST00000675712.1:ENST00000676425.1:ENST00000490093.6:ENST00000675342.1:ENST00000265062.8:ENST00000674748.1:ENST00000493186.6:ENST00000482525.5:ENST00000491681.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	42	2	2.27698	2.76823	3.25948	0.0583528	0.00246454	0.167723	0.0459102
chr16	85475899	85475999	6414589	0	+	0.48	(0.476,0.515]	chr16	615465	1166	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	2	43	2	2.38442	2.76822	3.15202	0.0417472	0.00455841	0.161736	0.0595107
chr2	101698638	101698738	836068	0	+	0.48	(0.476,0.515]	chr2	93899	1	SS5_PROX	SS5_PROX:INTRON	MAP4K4	ENSG00000071054.17	ENST00000427603.5:ENST00000324219.9:ENST00000350878.9:ENST00000425019.6:ENST00000625522.3:ENST00000413150.6:ENST00000634702.1:ENST00000456652.5:ENST00000347699.8:ENST00000417294.5	protein_coding	protein_coding	protein_coding	protein_coding	2	43	2	2.38442	2.76822	3.15202	0.0417472	0.00455841	0.161736	0.0595107
chrX	113955899	113955999	7867598	0	-	0.48	(0.476,0.515]	chrX	801544	3397	EXON_LNCRNA	EXON_LNCRNA:INTRON	XACT	ENSG00000241743.4	ENST00000468762.3:ENST00000674361.1	lncRNA	lncRNA	lncRNA	lncRNA	2	43	2	2.38442	2.76822	3.15202	0.0417472	0.00455841	0.161736	0.0595107
chr6	104975763	104975863	2930038	0	+	0.43	(0.408,0.44]	chr6	276110	171	INTRON	INTRON	LIN28B	ENSG00000187772.8	ENST00000635857.1:ENST00000637759.1:ENST00000345080.5	protein_coding	protein_coding	protein_coding	protein_coding	3	60	2	2.74518	2.76821	2.79124	0.0152229	0.00276922	0.108535	0.0469265
chr6	24710977	24711075	3070642	0	-	0.316327	(0.28,0.32]	chr6	285352	17	INTRON	INTRON	C6orf62	ENSG00000112308.13	ENST00000378119.9:ENST00000378102.3	protein_coding	protein_coding	protein_coding	protein_coding	14	300	2	2.73078	2.76818	2.80558	2.82354e-4	3.43683e-5	0.0154814	0.00467635
chr4	1909615	1909714	1910960	0	+	0.434343	(0.408,0.44]	chr4	191747	49	INTRON	INTRON	NSD2	ENSG00000109685.19	ENST00000508803.6:ENST00000508355.5:ENST00000514045.5:ENST00000398261.6:ENST00000382891.9:ENST00000353275.9:ENST00000382892.6:ENST00000382895.7:ENST00000312087.10:ENST00000420906.6:ENST00000503128.5:ENST00000509115.5:ENST00000677559.1:ENST00000512700.2:ENST00000678714.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	75	2	2.04842	2.7681750000000003	3.48793	0.00797555	0.00130904	0.0798772	0.0331539
chr21	14515610	14515707	7427894	0	-	0.298969	(0.28,0.32]	chr21	757750	27	INTRON	INTRON	SAMSN1	ENSG00000155307.19	ENST00000647101.1:ENST00000644288.1:ENST00000400564.5:ENST00000400566.6:ENST00000285670.7:ENST00000619120.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	18	325	2	2.1691	2.768085	3.36707	3.9096e-4	3.53704e-5	0.0178044	0.00502438
chr7	157170376	157170450	3454257	0	+	0.391892	(0.378,0.408]	chr7	322915	2	CDS	CDS:UTR3:EXON_MRNA	UBE3C	ENSG00000009335.18	ENST00000611269.4:ENST00000348165.10:ENST00000389103.4:ENST00000430750.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	106	2	2.76717	2.76805	2.76893	0.00316735	2.59679e-4	0.0503085	0.014326
chr16	85555766	85555866	6415388	0	+	0.44	(0.408,0.44]	chr16	615465	1965	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	28	463	2	2.36199	2.767995	3.174	3.9541e-5	1.25646e-6	0.00509892	7.25792e-4
chr5	458691	458774	2313226	0	+	0.421687	(0.408,0.44]	chr5	223779	3	INTRON	INTRON	EXOC3	ENSG00000180104.16	ENST00000512944.6:ENST00000515601.6:ENST00000315013.9:ENST00000503889.2:ENST00000510028.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	67	2	2.1226	2.767915	3.41323	0.012812	0.00129989	0.0926667	0.0333764
chr12	123756326	123756423	5244548	0	+	0.391753	(0.378,0.408]	chr12	498651	1	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	ATP6V0A2	ENSG00000185344.15	ENST00000330342.8:ENST00000675344.1:ENST00000534943.5:ENST00000544833.1:ENST00000543687.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	127	2	2.60805	2.767845	2.92764	9.04599e-4	3.01906e-4	0.0278365	0.0155054
chr1	31922531	31922629	414276	0	-	0.336735	(0.32,0.35]	chr1	49914	8	INTRON	INTRON	PTP4A2	ENSG00000184007.22	ENST00000647444.2:ENST00000649841.1:ENST00000468531.1:ENST00000534796.5:ENST00000532289.1:ENST00000526960.1:ENST00000524384.5:ENST00000528840.1:ENST00000494444.2:ENST00000529477.5:ENST00000533408.1:ENST00000475464.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	47	2	2.51061	2.767655	3.0247	0.0364463	0.00671684	0.138959	0.0738715
chr6	35844300	35844399	3088036	0	-	0.323232	(0.32,0.35]	chr6	288820	13	INTRON	INTRON	SRPK1	ENSG00000096063.16	ENST00000373825.7:ENST00000423325.6:ENST00000346162.10:ENST00000361690.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	47	2	2.51061	2.767655	3.0247	0.0364463	0.00671684	0.138959	0.0738715
chr7	119861127	119861227	3629952	0	-	0.35	(0.32,0.35]	chr7	337335	599	INTRON	INTRON	LINC02476	ENSG00000225546.6	ENST00000660268.1:ENST00000431071.5:ENST00000426413.2	lncRNA	lncRNA	lncRNA	lncRNA	2	47	2	2.51061	2.767655	3.0247	0.0364463	0.00671684	0.138959	0.0738715
chr7	64534411	64534511	3537032	0	-	0.35	(0.32,0.35]	chr7	329904	75	INTRON	INTRON	ZNF680	ENSG00000173041.12	ENST00000309683.11:ENST00000476563.1:ENST00000470847.1:ENST00000447137.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	63	2	2.49929	2.7676299999999996	3.03597	0.00832487	0.00776612	0.0787356	0.0774402
chr1	29104835	29104935	60891	0	+	0.5	(0.476,0.515]	chr1	7771	65	INTRON	INTRON	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000373798.5:ENST00000649674.1:ENST00000343067.9:ENST00000349460.9:ENST00000490308.2:ENST00000650132.1:ENST00000649992.1:ENST00000460378.1:ENST00000462032.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	54	2	2.53671	2.767615	2.99852	0.0077575	0.00624027	0.0757402	0.0718843
chr15	90232728	90232822	6258297	0	-	0.5	(0.476,0.515]	chr15	597220	4	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CIB1	ENSG00000185043.13	ENST00000328649.11:ENST00000695870.1:ENST00000612800.1:ENST00000650306.1:ENST00000695872.1:ENST00000695873.1:ENST00000695874.1:ENST00000695875.1:ENST00000695876.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	54	2	2.53671	2.767615	2.99852	0.0077575	0.00624027	0.0757402	0.0718843
chr16	312752	312851	6426456	0	-	0.50505	(0.476,0.515]	chr16	617494	23	INTRON	INTRON	AXIN1	ENSG00000103126.15	ENST00000262320.8:ENST00000461023.5:ENST00000354866.7:ENST00000481769.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	54	2	2.53671	2.767615	2.99852	0.0077575	0.00624027	0.0757402	0.0718843
chr3	195949771	195949869	1896599	0	-	0.459184	(0.44,0.476]	chr3	189779	7	EXON_LNCRNA	EXON_LNCRNA:SS3_PROX:INTRON	ENSG00000260261	ENSG00000260261.2	ENST00000607976.2:ENST00000641484.1:ENST00000570130.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	12	200	2	2.02923	2.767615	3.506	0.0017848	5.18167e-6	0.0392749	0.00169576
chr9	92273449	92273544	4287137	0	-	0.4	(0.378,0.408]	chr9	394223	12	INTRON	INTRON	IARS1	ENSG00000196305.19	ENST00000375643.7:ENST00000443024.7:ENST00000447699.7:ENST00000683537.1:ENST00000684726.1:ENST00000683192.1:ENST00000683565.1:ENST00000682756.1:ENST00000684542.1:ENST00000683793.1:ENST00000683817.1:ENST00000682141.1:ENST00000682893.1:ENST00000684557.1:ENST00000498025.2:ENST00000682156.1:ENST00000627121.3:ENST00000683469.1:ENST00000683495.1:ENST00000682578.1:ENST00000682533.1:ENST00000472894.2:ENST00000684757.1:ENST00000684445.1:ENST00000683376.1:ENST00000683679.1:ENST00000683119.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	78	2	2.256	2.76761	3.27922	0.00336115	0.00312717	0.0532154	0.0499153
chr15	20418413	20418512	6118031	0	-	0.292929	(0.28,0.32]	chr15	582352	93	INTRON	INTRON	HERC2P3	ENSG00000180229.12	ENST00000426501.5:ENST00000428453.5:ENST00000437318.5:ENST00000430598.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	5	95	2	1.90241	2.767585	3.63276	0.0157236	0.00114475	0.109464	0.0308149
chr1	235424477	235424575	340256	0	+	0.387755	(0.378,0.408]	chr1	39585	3	INTRON	INTRON	TBCE	ENSG00000285053.1:ENSG00000284770.2	ENST00000644055.1:ENST00000645655.1:ENST00000647428.1:ENST00000643418.1:ENST00000646624.1:ENST00000647186.1:ENST00000646528.1:ENST00000645351.1:ENST00000643410.1:ENST00000645205.1:ENST00000645836.1:ENST00000642503.1:ENST00000646281.1:ENST00000645069.1:ENST00000644680.1:ENST00000645578.1:ENST00000642431.1:ENST00000644604.1:ENST00000651186.1:ENST00000643125.1:ENST00000406207.5:ENST00000642463.1:ENST00000645899.1:ENST00000647233.1:ENST00000644578.1:ENST00000647418.1:ENST00000645372.1:ENST00000645582.1:ENST00000643994.1:ENST00000647407.1:ENST00000642610.2:ENST00000644037.1:ENST00000646463.1:ENST00000366601.8:ENST00000643524.1:ENST00000646536.1:ENST00000643142.1:ENST00000644838.1:ENST00000646286.1:ENST00000646186.1:ENST00000643615.1:ENST00000543662.4:ENST00000646848.1:ENST00000647332.1:ENST00000647489.1:ENST00000645551.1:ENST00000646821.1:ENST00000472011.6:ENST00000643238.1:ENST00000646104.1:ENST00000645662.1:ENST00000643993.1:ENST00000645964.1:ENST00000642339.1:ENST00000644217.1:ENST00000642372.1:ENST00000646929.1:ENST00000644265.1:ENST00000482230.6:ENST00000644910.1:ENST00000461651.1:ENST00000647338.1:ENST00000646842.1:ENST00000647322.1:ENST00000646495.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	57	2	2.29798	2.76753	3.23708	0.0147606	0.00365053	0.106702	0.0535094
chrX	124017161	124017260	7717308	0	+	0.383838	(0.378,0.408]	chrX	789468	131	INTRON	INTRON	STAG2	ENSG00000101972.20	ENST00000394477.5:ENST00000218089.13:ENST00000455404.5:ENST00000483575.5:ENST00000687810.1:ENST00000687071.1:ENST00000469481.1:ENST00000458700.5:ENST00000371160.5:ENST00000435103.5:ENST00000687852.1:ENST00000371145.8:ENST00000692982.1:ENST00000371157.7:ENST00000691035.1:ENST00000686802.1:ENST00000691383.1:ENST00000686127.1:ENST00000371144.7:ENST00000458176.5:ENST00000466748.5:ENST00000471107.1:ENST00000428941.5:ENST00000435215.5:ENST00000394478.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	57	2	2.29798	2.76753	3.23708	0.0147606	0.00365053	0.106702	0.0535094
chr14	30670695	30670795	5675536	0	+	0.36	(0.35,0.378]	chr14	540698	3	SS5_PROX	SS5_PROX:INTRON	SCFD1	ENSG00000092108.22	ENST00000678760.1:ENST00000677690.1:ENST00000678124.1:ENST00000678716.1:ENST00000678402.1:ENST00000679153.1:ENST00000678516.1:ENST00000678802.1:ENST00000679096.1:ENST00000679102.1:ENST00000678475.1:ENST00000676509.1:ENST00000676750.1:ENST00000679165.1:ENST00000676658.1:ENST00000678399.1:ENST00000678185.1:ENST00000677027.1:ENST00000678006.1:ENST00000677413.1:ENST00000555259.5:ENST00000554437.6:ENST00000676834.1:ENST00000678858.1:ENST00000553693.6:ENST00000676914.1:ENST00000676465.1:ENST00000676812.1:ENST00000678669.1:ENST00000676520.1:ENST00000676876.1:ENST00000677617.1:ENST00000676954.1:ENST00000677456.1:ENST00000678735.1:ENST00000679342.1:ENST00000678637.1:ENST00000677176.1:ENST00000557076.6:ENST00000677637.1:ENST00000677974.1:ENST00000458591.7:ENST00000484733.6:ENST00000556768.5:ENST00000544052.6:ENST00000463622.6:ENST00000676674.1:ENST00000677340.1:ENST00000311943.11:ENST00000679075.1:ENST00000678396.1:ENST00000676473.1:ENST00000396629.6:ENST00000678579.1:ENST00000678104.1:ENST00000554819.5:ENST00000553278.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	71	2	2.20096	2.767495	3.33403	0.0087123	0.00272701	0.0844834	0.0467523
chr16	72605989	72606089	6518725	0	-	0.35	(0.32,0.35]	chr16	631372	351	INTRON	INTRON	LINC01572	ENSG00000261008.8	ENST00000624829.4:ENST00000561611.2:ENST00000656218.1:ENST00000666555.2:ENST00000664155.1:ENST00000657725.1:ENST00000563770.5:ENST00000668081.1:ENST00000570152.2:ENST00000662171.1:ENST00000691892.1:ENST00000659470.1:ENST00000655530.1:ENST00000570035.5:ENST00000563823.6	lncRNA	lncRNA	lncRNA	lncRNA	2	47	2	2.68921	2.76745	2.84569	0.0230336	0.0121137	0.118056	0.0962599
chr2	86554438	86554538	1171691	0	-	0.33	(0.32,0.35]	chr2	125049	117	INTRON	INTRON	CHMP3	ENSG00000115561.16	ENST00000263856.9:ENST00000409727.5:ENST00000409225.2:ENST00000393773.7:ENST00000486404.5:ENST00000485465.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	47	2	2.68921	2.76745	2.84569	0.0230336	0.0121137	0.118056	0.0962599
chr3	52690191	52690291	1429231	0	+	0.34	(0.32,0.35]	chr3	150995	2	SS3_PROX	SS3_PROX:INTRON	GNL3	ENSG00000163938.17	ENST00000394799.6:ENST00000418458.6:ENST00000492349.5:ENST00000496254.5:ENST00000484022.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	47	2	2.68921	2.76745	2.84569	0.0230336	0.0121137	0.118056	0.0962599
chr4	99042948	99043048	2003194	0	+	0.34	(0.32,0.35]	chr4	199860	3	SS3_PROX	SS3_PROX:INTRON	METAP1	ENSG00000164024.12	ENST00000296411.11:ENST00000507537.5:ENST00000513199.5:ENST00000513097.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	47	2	2.68921	2.76745	2.84569	0.0230336	0.0121137	0.118056	0.0962599
chr2	241656928	241657027	1055671	0	+	0.535354	(0.515,0.57]	chr2	112516	12	INTRON	INTRON	ATG4B	ENSG00000168397.17	ENST00000405546.7:ENST00000402096.5:ENST00000494465.5:ENST00000483778.5:ENST00000404914.8:ENST00000468018.5:ENST00000482507.5:ENST00000493618.5:ENST00000425239.5:ENST00000400771.7:ENST00000430617.6:ENST00000344376.9:ENST00000429899.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	90	2	2.60978	2.7674200000000004	2.92506	0.00151689	2.50659e-4	0.0352794	0.0140705
chr1	113109642	113109741	188478	0	+	0.545455	(0.515,0.57]	chr1	20919	15	INTRON	INTRON	LRIG2	ENSG00000198799.12	ENST00000361127.6:ENST00000492207.5:ENST00000466161.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	90	2	2.67294	2.76739	2.86184	0.00112534	3.55958e-4	0.0306963	0.0168968
chr10	121895561	121895660	4709503	0	-	0.434343	(0.408,0.44]	chr10	434490	51	INTRON	INTRON	ATE1	ENSG00000107669.19	ENST00000369043.8:ENST00000224652.12:ENST00000693411.1:ENST00000540606.7:ENST00000690773.1:ENST00000686894.1:ENST00000685890.1:ENST00000687583.1:ENST00000693276.1:ENST00000686451.1:ENST00000687319.1:ENST00000686786.1:ENST00000684967.1:ENST00000689057.1:ENST00000692329.1:ENST00000689393.1:ENST00000689571.1:ENST00000692718.1:ENST00000688526.1:ENST00000692034.1:ENST00000690128.1:ENST00000690748.1:ENST00000692491.1:ENST00000369040.9:ENST00000691087.1:ENST00000691830.1:ENST00000687089.1:ENST00000693486.1:ENST00000690355.1:ENST00000691765.1:ENST00000691226.1:ENST00000692743.1:ENST00000691108.1:ENST00000689297.1:ENST00000685427.1:ENST00000692513.1:ENST00000688057.1:ENST00000684876.1:ENST00000687607.1:ENST00000688424.1:ENST00000692255.1:ENST00000690706.1:ENST00000693395.1:ENST00000690324.1:ENST00000692278.1:ENST00000687144.1:ENST00000691573.1:ENST00000685289.1:ENST00000686907.1:ENST00000687206.1:ENST00000685007.1:ENST00000686811.1:ENST00000691041.1:ENST00000423243.7:ENST00000689834.1:ENST00000689455.1:ENST00000693655.1:ENST00000690488.1:ENST00000687458.1:ENST00000685072.1:ENST00000692087.1:ENST00000690415.1:ENST00000687935.1:ENST00000687251.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	42	2	2.58179	2.767375	2.95296	0.024638	0.00929354	0.131869	0.0817766
chr6	15457564	15457663	2825065	0	+	0.363636	(0.35,0.378]	chr6	265210	50	INTRON	INTRON	JARID2	ENSG00000008083.14	ENST00000341776.7:ENST00000397311.4	protein_coding	protein_coding	protein_coding	protein_coding	3	59	2	2.49643	2.767285	3.03814	0.00767003	0.00752974	0.0773151	0.075364
chr21	9105006	9105106	7426389	0	-	0.44	(0.408,0.44]	chr21	757579	167	INTRON	INTRON	TEKT4P2	ENSG00000188681.12	ENST00000690061.1:ENST00000689141.1:ENST00000688310.1:ENST00000687537.1:ENST00000690096.1:ENST00000687888.1:ENST00000690389.1:ENST00000684989.1:ENST00000416067.6:ENST00000693307.1:ENST00000692383.1:ENST00000685666.1:ENST00000688451.1:ENST00000691190.1:ENST00000685532.1:ENST00000687488.1:ENST00000690713.1:ENST00000691834.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	3	57	2	1.81572	2.76723	3.71874	0.0626779	3.17998e-4	0.175915	0.0159645
chr12	110501116	110501216	5409975	0	-	0.51	(0.476,0.515]	chr12	516595	3	SS5_PROX	SS5_PROX:INTRON	VPS29	ENSG00000111237.19	ENST00000549578.6:ENST00000360579.11:ENST00000621131.4:ENST00000447578.6:ENST00000546588.1:ENST00000549970.5:ENST00000548259.1:ENST00000553128.5:ENST00000551655.1:ENST00000550267.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	100	2	2.2344	2.7671900000000003	3.29998	0.00432475	1.88247e-4	0.0579331	0.011951
chr19	19389029	19389129	7035178	0	+	0.38	(0.378,0.408]	chr19	701429	25	INTRON	INTRON	GATAD2A	ENSG00000167491.18	ENST00000494516.6:ENST00000360315.7:ENST00000609040.5:ENST00000417582.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	43	2	2.63247	2.767045	2.90162	0.0215745	0.0113157	0.123836	0.0886121
chr7	111282294	111282394	3621305	0	-	0.38	(0.378,0.408]	chr7	337093	3184	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	43	2	2.63247	2.767045	2.90162	0.0215745	0.0113157	0.123836	0.0886121
chr10	50370715	50370815	4618152	0	-	0.41	(0.408,0.44]	chr10	425422	260	INTRON	INTRON	SGMS1	ENSG00000198964.14	ENST00000429490.5:ENST00000361781.7:ENST00000619438.4:ENST00000492601.2:ENST00000609445.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	66	2	2.08376	2.766975	3.45019	0.0129886	0.00152664	0.0991656	0.0353936
chr8	140620785	140620885	4076418	0	-	0.44	(0.408,0.44]	chr8	370285	150	INTRON	INTRON	AGO2	ENSG00000123908.12	ENST00000220592.10:ENST00000519980.5:ENST00000523609.5:ENST00000517293.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	66	2	2.08376	2.766975	3.45019	0.0129886	0.00152664	0.0991656	0.0353936
chr17	27098312	27098412	6579808	0	+	0.35	(0.32,0.35]	chr17	639586	15	INTRON	INTRON	ENSG00000285822	ENSG00000285822.1	ENST00000649401.1	lncRNA	lncRNA	lncRNA	lncRNA	7	147	2	2.35389	2.76691	3.17993	0.00241005	1.79588e-4	0.0453511	0.0121697
chr20	32428614	32428706	7256531	0	+	0.347826	(0.32,0.35]	chr20	737082	2	SS5_PROX	SS5_PROX:INTRON	ASXL1	ENSG00000171456.21	ENST00000651418.1:ENST00000375687.10:ENST00000613218.4:ENST00000644587.1:ENST00000620121.4:ENST00000646985.1:ENST00000643168.1:ENST00000306058.9:ENST00000470145.3:ENST00000645514.1:ENST00000644615.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	167	2	2.72091	2.766765	2.81262	0.00311322	6.66036e-5	0.0498063	0.00677292
chr7	50601008	50601107	3530725	0	-	0.464646	(0.44,0.476]	chr7	329388	51	INTRON	INTRON	GRB10	ENSG00000106070.20	ENST00000335866.7:ENST00000398812.6:ENST00000398810.6:ENST00000401949.6:ENST00000402578.5:ENST00000644769.1:ENST00000403097.6:ENST00000644879.1:ENST00000406641.5:ENST00000402497.6:ENST00000357271.9:ENST00000643299.1:ENST00000407526.6:ENST00000645075.2:ENST00000473696.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	83	2	1.78423	2.76674	3.74925	0.0143065	4.08974e-4	0.104058	0.0185763
chr10	74052322	74052422	4455045	0	+	0.26	[0,0.28]	chr10	411397	88	INTRON	INTRON	VCL	ENSG00000035403.18	ENST00000623461.3:ENST00000372755.7:ENST00000624354.3:ENST00000211998.10:ENST00000478896.2:ENST00000461383.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	59	2	2.27119	2.766645	3.2621000000000002	0.070351	0.00367113	0.184298	0.056059199999999997
chr6	26117828	26117928	3070802	0	-	0.28	[0,0.28]	chr6	285403	23	INTRON	INTRON	H2BC4	ENSG00000180596.8	ENST00000314332.5	protein_coding	protein_coding	protein_coding	protein_coding	2	59	2	2.27119	2.766645	3.2621000000000002	0.070351	0.00367113	0.184298	0.056059199999999997
chr10	74122031	74122130	4652887	0	-	0.353535	(0.35,0.378]	chr10	428450	19	UTR3	UTR3:EXON_MRNA	AP3M1	ENSG00000185009.13	ENST00000355264.9	protein_coding	protein_coding	protein_coding	protein_coding	8	108	2	1.33473	2.766635	4.19854	0.0484067	2.91516e-5	0.153635	0.00428471
chr10	27511927	27512027	4413446	0	+	0.45	(0.44,0.476]	chr10	407061	2	SS3_PROX	SS3_PROX:INTRON	RAB18	ENSG00000099246.18	ENST00000682082.1:ENST00000611151.5:ENST00000621805.5:ENST00000535776.6:ENST00000684501.1:ENST00000683042.1:ENST00000683797.1:ENST00000682518.1:ENST00000356940.11:ENST00000682852.1:ENST00000683419.1:ENST00000683816.1:ENST00000682389.1:ENST00000684393.1:ENST00000682368.1:ENST00000683755.1:ENST00000682181.1:ENST00000682963.1:ENST00000375802.7:ENST00000465772.5:ENST00000682668.1:ENST00000683538.1:ENST00000423465.2:ENST00000682173.1:ENST00000683844.1:ENST00000682138.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	154	2	2.56833	2.7666250000000003	2.9649200000000002	9.93239e-4	3.28585e-5	0.0288872	0.00459178
chr13	75567512	75567612	5511907	0	+	0.41	(0.408,0.44]	chr13	527315	2	SS5_PROX	SS5_PROX:INTRON	UCHL3:ENSG00000261553	ENSG00000118939.18:ENSG00000261553.5	ENST00000618773.4:ENST00000471792.6:ENST00000563635.5:ENST00000377595.8:ENST00000419068.1:ENST00000570285.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA:processed_transcript	5	78	2	2.47605	2.7665499999999996	3.05705	0.00658331	0.00116417	0.0701901	0.0314524
chr12	104524788	104524888	5211362	0	+	0.36	(0.35,0.378]	chr12	493315	669	INTRON	INTRON	CHST11	ENSG00000171310.11	ENST00000303694.6:ENST00000547956.1:ENST00000549260.5:ENST00000546689.1	protein_coding	protein_coding	protein_coding	protein_coding	2	44	2	2.60341	2.766465	2.92952	0.0275785	0.00881187	0.123904	0.084878
chr2	8746869	8746961	1061087	0	-	0.358696	(0.35,0.378]	chr2	113148	5	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	KIDINS220	ENSG00000134313.17	ENST00000569008.2:ENST00000689369.1:ENST00000693394.1:ENST00000689852.1:ENST00000693432.1:ENST00000496383.5:ENST00000256707.8:ENST00000687912.1:ENST00000685097.1:ENST00000473731.5:ENST00000687894.1:ENST00000691030.1:ENST00000686906.1:ENST00000488729.5:ENST00000489024.5:ENST00000638224.1:ENST00000459813.2:ENST00000692419.1:ENST00000690467.1:ENST00000689531.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	44	2	2.60341	2.766465	2.92952	0.0275785	0.00881187	0.123904	0.084878
chr21	34878257	34878357	7447167	0	-	0.32	(0.28,0.32]	chr21	759849	183	INTRON	INTRON	RUNX1	ENSG00000159216.19	ENST00000300305.7:ENST00000675419.1:ENST00000437180.5:ENST00000344691.8:ENST00000482318.5:ENST00000399240.5:ENST00000358356.9:ENST00000399237.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	97	2	2.40959	2.766455	3.12332	0.00698537	0.00207334	0.0718189	0.0422762
chr22	19108353	19108453	7551874	0	-	0.43	(0.408,0.44]	chr22	771903	185	INTRON	INTRON	DGCR2	ENSG00000070413.20	ENST00000537045.5:ENST00000545799.5:ENST00000263196.12:ENST00000389262.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	14	231	2	2.26874	2.766455	3.26417	3.53883e-4	1.03959e-5	0.0168397	0.00252528
chr9	123249953	123250053	4340295	0	-	0.29	(0.28,0.32]	chr9	398963	126	INTRON	INTRON	STRBP	ENSG00000165209.19	ENST00000348403.10:ENST00000360998.3:ENST00000407982.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	51	2	2.45545	2.766445	3.07744	0.0438092	0.00604536	0.14901	0.0700813
chr2	99391690	99391787	835374	0	+	0.391753	(0.378,0.408]	chr2	93746	6	INTRON	INTRON	EIF5B	ENSG00000158417.11	ENST00000617677.1:ENST00000289371.11	protein_coding	protein_coding	protein_coding	protein_coding	3	57	2	2.05897	2.76637	3.47377	0.0339294	0.00103087	0.134508	0.0294094
chr17	80330824	80330921	6683781	0	+	0.546392	(0.515,0.57]	chr17	653061	20	INTRON	INTRON	RNF213	ENSG00000173821.20	ENST00000582970.6:ENST00000508628.6:ENST00000559070.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	36	2	2.34087	2.766325	3.19178	0.0469761	0.00289534	0.151917	0.0494641
chr2	53923819	53923919	1120089	0	-	0.56	(0.515,0.57]	chr2	120023	4	SS3_PROX	SS3_PROX:INTRON	PSME4	ENSG00000068878.15	ENST00000404125.6:ENST00000389993.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	36	2	2.34087	2.766325	3.19178	0.0469761	0.00289534	0.151917	0.0494641
chr1	160301354	160301453	571878	0	-	0.30303	(0.28,0.32]	chr1	69300	17	INTRON	INTRON	COPA	ENSG00000122218.17	ENST00000241704.8:ENST00000696204.1:ENST00000696203.1:ENST00000696202.1:ENST00000649963.1:ENST00000696208.1:ENST00000696207.1:ENST00000696206.1:ENST00000649676.1:ENST00000368069.7:ENST00000647693.1:ENST00000649787.1:ENST00000650154.1:ENST00000647799.1:ENST00000648805.1:ENST00000647683.1:ENST00000649231.1:ENST00000648501.1:ENST00000696209.1:ENST00000696210.1:ENST00000696211.1:ENST00000647899.1:ENST00000648632.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	84	2	1.72279	2.766305	3.80982	0.0496859	3.09593e-4	0.156383	0.0157609
chr2	227497716	227497815	1025914	0	+	0.383838	(0.378,0.408]	chr2	109562	57	INTRON	INTRON	AGFG1	ENSG00000173744.18	ENST00000409979.6:ENST00000310078.13:ENST00000409315.5:ENST00000373671.7:ENST00000409171.5	protein_coding	protein_coding	protein_coding	protein_coding	3	58	2	1.88729	2.76629	3.64529	0.0532327	4.71767e-4	0.162538	0.0196294
chr16	85577941	85578041	6415611	0	+	0.59	(0.57,1]	chr16	615470	212	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	16	136	2	2.52739	2.766215	3.00504	3.01828e-5	2.12994e-6	0.0043803	0.00101617
chr8	26292362	26292441	3716096	0	+	0.43038	(0.408,0.44]	chr8	345345	2	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	PPP2R2A	ENSG00000221914.11	ENST00000380737.8:ENST00000520329.5:ENST00000518254.5:ENST00000524169.5:ENST00000518397.5:ENST00000522535.5:ENST00000665949.1:ENST00000522150.5:ENST00000523473.5:ENST00000521095.5:ENST00000660435.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	91	2	1.86926	2.76618	3.6631	0.00709955	6.21419e-4	0.0755905	0.0229151
chr10	63224979	63225079	4632977	0	-	0.49	(0.476,0.515]	chr10	426215	46	INTRON	INTRON	JMJD1C	ENSG00000171988.20	ENST00000399262.7:ENST00000402544.5:ENST00000542921.5:ENST00000469152.5:ENST00000489372.4:ENST00000633035.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	55	2	2.19809	2.7661249999999997	3.33416	0.020317	0.00230489	0.121522	0.0428247
chr19	49916515	49916614	7201912	0	-	0.494949	(0.476,0.515]	chr19	730661	30	INTRON	INTRON	NUP62	ENSG00000213024.12	ENST00000422090.2:ENST00000352066.8:ENST00000597723.5:ENST00000597029.5:ENST00000596217.1:ENST00000595463.5:ENST00000593652.5:ENST00000595761.1:ENST00000599567.5:ENST00000596437.5:ENST00000600583.5:ENST00000594673.5:ENST00000599788.1:ENST00000600935.1:ENST00000596680.5:ENST00000601665.5:ENST00000599560.5:ENST00000595373.5:ENST00000599186.5:ENST00000597814.1:ENST00000599830.1:ENST00000598301.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	55	2	2.19809	2.7661249999999997	3.33416	0.020317	0.00230489	0.121522	0.0428247
chr2	85545092	85545186	821628	0	+	0.478723	(0.476,0.515]	chr2	91572	15	UTR3	UTR3:EXON_MRNA	MAT2A	ENSG00000168906.13	ENST00000306434.8	protein_coding	protein_coding	protein_coding	protein_coding	3	55	2	2.19809	2.7661249999999997	3.33416	0.020317	0.00230489	0.121522	0.0428247
chr22	20117958	20118047	7478589	0	+	0.640449	(0.57,1]	chr22	762774	3	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	RANBP1	ENSG00000099901.17	ENST00000435265.5:ENST00000432879.5:ENST00000430524.6:ENST00000402752.5:ENST00000488484.1:ENST00000331821.7:ENST00000411892.5:ENST00000467920.1:ENST00000416427.5:ENST00000421656.5:ENST00000423859.5:ENST00000418705.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	25	208	2	2.54447	2.76606	2.98765	5.11751e-6	2.15018e-7	0.00167795	2.20432e-4
chr17	75801471	75801571	6676580	0	+	0.32	(0.28,0.32]	chr17	651915	74	INTRON	INTRON	UNK	ENSG00000132478.10	ENST00000589666.6:ENST00000592629.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	69	2	2.18092	2.766	3.35108	0.0271832	0.00221345	0.123904	0.0435144
chr21	6989923	6990022	7425919	0	-	0.363636	(0.35,0.378]	chr21	757520	29	INTRON	INTRON	ENSG00000280018	ENSG00000280018.4	ENST00000623165.3	lncRNA	lncRNA	lncRNA	lncRNA	4	82	2	2.59046	2.76589	2.94132	0.00528327	0.0016832	0.0656295	0.0370386
chr22	20556537	20556636	7479857	0	+	0.50505	(0.476,0.515]	chr22	763003	10	INTRON	INTRON	MED15	ENSG00000099917.17	ENST00000444094.5:ENST00000414658.5:ENST00000433831.5:ENST00000432052.5:ENST00000292733.11:ENST00000263205.11:ENST00000477824.5:ENST00000406969.5:ENST00000382974.6:ENST00000441501.5:ENST00000473028.5:ENST00000457322.5:ENST00000428629.5:ENST00000424287.5:ENST00000423862.5:ENST00000487550.5:ENST00000476767.5:ENST00000492381.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	87	2	2.69104	2.76586	2.84068	0.00217133	9.94264e-4	0.0417893	0.0290397
chr13	79400003	79400103	5626347	0	-	0.33	(0.32,0.35]	chr13	536667	207	INTRON	INTRON	RBM26	ENSG00000139746.16	ENST00000438737.3:ENST00000438724.5:ENST00000622611.4:ENST00000267229.11:ENST00000472143.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	64	2	1.99307	2.765805	3.53854	0.04271	9.09596e-4	0.148082	0.0277043
chr14	67894704	67894804	5766122	0	+	0.36	(0.35,0.378]	chr14	547058	71	INTRON	INTRON	RAD51B	ENSG00000182185.19	ENST00000487861.5:ENST00000471583.6:ENST00000479335.5:ENST00000487270.5:ENST00000488612.5:ENST00000553595.5:ENST00000497460.5:ENST00000492236.5:ENST00000554244.5:ENST00000478014.5:ENST00000469165.6:ENST00000460526.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	59	2	2.44701	2.76566	3.08431	0.00900997	0.0065853	0.0851009	0.0701901
chr16	29540344	29540444	6470985	0	-	0.36	(0.35,0.378]	chr16	625209	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ENSG00000288632:SMG1P2	ENSG00000288632.1:ENSG00000205534.6	ENST00000675579.1:ENST00000566127.1	lncRNA	lncRNA	lncRNA:transcribed_unprocessed_pseudogene	lncRNA:transcribed_unprocessed_pseudogene	3	59	2	2.44701	2.76566	3.08431	0.00900997	0.0065853	0.0851009	0.0701901
chr15	55253428	55253528	6180538	0	-	0.42	(0.408,0.44]	chr15	589154	45	INTRON	INTRON	RAB27A	ENSG00000069974.16	ENST00000336787.6:ENST00000396307.6:ENST00000564609.5:ENST00000569493.5:ENST00000567380.5:ENST00000565972.5:ENST00000563262.5:ENST00000568803.1:ENST00000567639.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	55	2	2.16746	2.76562	3.36378	0.024436	0.0016048	0.12011	0.0367961
chr19	41301894	41301984	7071435	0	+	0.566667	(0.515,0.57]	chr19	706789	2	SS5_PROX	SS5_PROX:INTRON	HNRNPUL1	ENSG00000105323.18	ENST00000352456.7:ENST00000595018.5:ENST00000392006.8:ENST00000378215.8:ENST00000595196.5:ENST00000617774.1:ENST00000602130.5:ENST00000593587.5:ENST00000263367.7:ENST00000599614.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	36	2	2.56306	2.7656	2.96814	0.0247751	0.00756432	0.131869	0.0749063
chr2	32382977	32383077	731039	0	+	0.41	(0.408,0.44]	chr2	84286	23	INTRON	INTRON	BIRC6	ENSG00000115760.15	ENST00000421745.7:ENST00000648282.1	protein_coding	protein_coding	protein_coding	protein_coding	3	55	2	2.21857	2.7655700000000003	3.31257	0.0209591	0.00198621	0.112046	0.0411469
chr1	154178378	154178476	558442	0	-	0.5	(0.476,0.515]	chr1	66272	3	INTRON	INTRON	TPM3	ENSG00000143549.21	ENST00000611659.4:ENST00000368533.8:ENST00000469717.5:ENST00000330188.13:ENST00000341485.10:ENST00000341372.8:ENST00000328159.9:ENST00000509409.5:ENST00000651873.1:ENST00000271850.11:ENST00000368531.6:ENST00000323144.12:ENST00000651641.1:ENST00000368530.7:ENST00000509601.1:ENST00000651644.1:ENST00000368527.7:ENST00000473036.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	42	2	2.47949	2.765505	3.05152	0.0326974	0.0064848	0.145164	0.0699952
chr16	21514829	21514929	6461505	0	-	0.41	(0.408,0.44]	chr16	623383	83	INTRON	INTRON	SMG1P3	ENSG00000180747.15	ENST00000522841.6:ENST00000437413.2:ENST00000435197.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	10	148	2	2.49215	2.765485	3.03882	9.66897e-4	1.27319e-4	0.0282401	0.00968725
chr9	133159912	133160010	4369551	0	-	0.316327	(0.28,0.32]	chr9	401997	35	INTRON	INTRON	GBGT1	ENSG00000148288.13	ENST00000372040.9:ENST00000372043.7:ENST00000470431.5:ENST00000472281.5:ENST00000540636.6:ENST00000646215.1:ENST00000372038.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	71	2	2.50462	2.76547	3.02632	0.0102735	0.0071944	0.0850389	0.0756118
chr2	20345519	20345618	1076734	0	-	0.50505	(0.476,0.515]	chr2	115047	121	INTRON	INTRON	PUM2	ENSG00000055917.16	ENST00000361078.7:ENST00000442400.5:ENST00000420234.5:ENST00000429419.6:ENST00000432105.5:ENST00000446940.5:ENST00000424110.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	11	147	2	2.00437	2.76541	3.52645	0.00157597	8.15975e-5	0.0366602	0.00810741
chr4	705821	705895	1907787	0	+	0.581081	(0.57,1]	chr4	191199	2	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	PCGF3	ENSG00000185619.18	ENST00000419774.5:ENST00000362003.9:ENST00000475288.5:ENST00000470161.6:ENST00000427463.5:ENST00000482726.5:ENST00000400151.6:ENST00000430644.5:ENST00000484141.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	87	2	2.63359	2.765395	2.8972	7.53662e-5	6.94474e-5	0.00777227	0.00690574
chr19	40625065	40625162	7069779	0	+	0.443299	(0.44,0.476]	chr19	706412	6	INTRON	INTRON	LTBP4	ENSG00000090006.18	ENST00000204005.13:ENST00000308370.11:ENST00000396819.8:ENST00000243562.13:ENST00000601032.5:ENST00000599724.5:ENST00000595118.5:ENST00000318809.11:ENST00000597151.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	55	2	2.38519	2.76539	3.14559	0.012193	0.00384923	0.0910127	0.0562562
chr15	50355068	50355153	6171876	0	-	0.623529	(0.57,1]	chr15	588171	2	UTR5	UTR5:EXON_MRNA	GABPB1	ENSG00000104064.18	ENST00000380877.8:ENST00000220429.12:ENST00000543881.5:ENST00000396464.7:ENST00000429662.6:ENST00000359031.8:ENST00000560825.5:ENST00000558970.2	protein_coding	protein_coding	protein_coding	protein_coding	6	54	2	1.94024	2.765285	3.59033	0.0116325	1.72589e-5	0.0889284	0.00315885
chr2	61513661	61513761	1130972	0	-	0.24	[0,0.28]	chr2	121602	2	SS5_PROX	SS5_PROX:INTRON	XPO1	ENSG00000082898.19	ENST00000677110.1:ENST00000676553.1:ENST00000677556.1:ENST00000677814.1:ENST00000676771.1:ENST00000677803.1:ENST00000677239.1:ENST00000678790.1:ENST00000677928.1:ENST00000678182.1:ENST00000677150.1:ENST00000678172.1:ENST00000678360.1:ENST00000678081.1:ENST00000676889.1:ENST00000676783.1:ENST00000679035.1:ENST00000677422.1:ENST00000677417.1:ENST00000677813.1:ENST00000676999.1:ENST00000676667.1:ENST00000678263.1:ENST00000678877.1:ENST00000677933.1:ENST00000680228.1:ENST00000677289.1:ENST00000677190.1:ENST00000401558.7:ENST00000428210.5:ENST00000677290.1:ENST00000677850.1:ENST00000451765.6:ENST00000676789.1:ENST00000678741.1:ENST00000404992.6:ENST00000406957.5:ENST00000443240.5:ENST00000476585.5:ENST00000468259.1:ENST00000420673.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	141	2	1.66646	2.765235	3.86401	0.0162471	6.37628e-4	0.109464	0.0231685
chr3	47679279	47679373	1684033	0	-	0.382979	(0.378,0.408]	chr3	172034	6	INTRON	INTRON	SMARCC1	ENSG00000173473.11	ENST00000254480.10:ENST00000425518.5:ENST00000462198.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	68	2	2.09402	2.7652349999999997	3.43645	0.0126438	0.00171162	0.0982897	0.037419
chr7	128616470	128616569	3408215	0	+	0.424242	(0.408,0.44]	chr7	318382	1	INTRON	INTRON	ENSG00000242588	ENSG00000242588.6	ENST00000605862.5	lncRNA	lncRNA	lncRNA	lncRNA	5	88	2	2.70586	2.7652349999999997	2.82461	0.00241819	9.14702e-4	0.0442901	0.027804
chr16	23492393	23492486	6464399	0	-	0.365591	(0.35,0.378]	chr16	623883	2	INTRON	INTRON	GGA2	ENSG00000103365.15	ENST00000309859.8:ENST00000567468.5:ENST00000567201.5:ENST00000570111.5:ENST00000568799.1:ENST00000563494.5:ENST00000569300.5:ENST00000569189.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	44	2	2.53856	2.765145	2.99173	0.0326077	0.00713365	0.133687	0.0756118
chr5	90520961	90521060	2672117	0	-	0.373737	(0.35,0.378]	chr5	252948	1	INTRON	INTRON	LYSMD3	ENSG00000176018.13	ENST00000500869.6:ENST00000315948.11:ENST00000509384.5:ENST00000453259.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	44	2	2.53856	2.765145	2.99173	0.0326077	0.00713365	0.133687	0.0756118
chr15	63734126	63734223	6199887	0	-	0.350515	(0.35,0.378]	chr15	591364	6	INTRON	INTRON	HERC1	ENSG00000103657.14	ENST00000443617.7:ENST00000561400.1	protein_coding	protein_coding	protein_coding	protein_coding	3	63	2	2.66568	2.765095	2.86451	0.0109111	0.00496487	0.0923273	0.0615009
chr11	57411619	57411718	4953290	0	-	0.393939	(0.378,0.408]	chr11	464908	11	INTRON	INTRON	ENSG00000254979:SLC43A3	ENSG00000254979.5:ENSG00000134802.18	ENST00000534081.5:ENST00000395124.6:ENST00000395123.6:ENST00000352187.5:ENST00000529554.5:ENST00000525205.5:ENST00000533524.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	96	2	2.74646	2.7650949999999996	2.78373	0.00271684	9.21936e-4	0.0481064	0.0278396
chr7	151501267	151501367	3674739	0	-	0.29	(0.28,0.32]	chr7	341207	27	INTRON	INTRON	RHEB	ENSG00000106615.10	ENST00000262187.10:ENST00000472642.5:ENST00000478470.5:ENST00000496004.5:ENST00000470370.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	106	2	2.12972	2.765065	3.40041	0.00413957	0.00273088	0.0588921	0.0467642
chr7	140918768	140918868	3663674	0	-	0.31	(0.28,0.32]	chr7	340105	682	INTRON	INTRON	BRAF	ENSG00000157764.14	ENST00000496384.7:ENST00000644969.2:ENST00000646891.1:ENST00000644905.1:ENST00000642228.1:ENST00000288602.11:ENST00000646730.1:ENST00000497784.2:ENST00000642272.1:ENST00000642808.1:ENST00000643790.1:ENST00000469930.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	69	2	2.09794	2.7649	3.43186	0.0340483	0.00160646	0.134863	0.0367961
chr3	158363402	158363502	1540822	0	+	0.5	(0.476,0.515]	chr3	160318	81	INTRON	INTRON	RSRC1	ENSG00000174891.14	ENST00000480820.5:ENST00000295930.7:ENST00000471994.5:ENST00000683733.1:ENST00000682221.1:ENST00000683831.1:ENST00000683516.1:ENST00000482822.3:ENST00000476899.6:ENST00000464171.5:ENST00000611884.5:ENST00000682164.1:ENST00000684604.1:ENST00000683899.1:ENST00000682500.1:ENST00000684683.1:ENST00000312179.10:ENST00000475278.6:ENST00000480119.5:ENST00000471911.5:ENST00000683137.1:ENST00000684353.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	54	2	2.58615	2.764825	2.9435	0.00929849	0.00515536	0.0817766	0.0650394
chr20	62349303	62349402	7361527	0	-	0.393939	(0.378,0.408]	chr20	751047	19	INTRON	INTRON	LAMA5	ENSG00000130702.15	ENST00000252999.7:ENST00000370677.4:ENST00000497053.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	42	2	2.60296	2.764805	2.92665	0.0267851	0.0086017	0.123349	0.083729
chr3	171333542	171333642	1866180	0	-	0.38	(0.378,0.408]	chr3	186980	1050	INTRON	INTRON	TNIK	ENSG00000154310.17	ENST00000436636.7:ENST00000341852.10:ENST00000284483.12:ENST00000475336.5:ENST00000357327.9:ENST00000460047.5:ENST00000488470.5:ENST00000470834.5	protein_coding	protein_coding	protein_coding	protein_coding	2	42	2	2.60296	2.764805	2.92665	0.0267851	0.0086017	0.123349	0.083729
chr7	23451085	23451185	3503473	0	-	0.4	(0.378,0.408]	chr7	326910	199	INTRON	INTRON	IGF2BP3	ENSG00000136231.14	ENST00000258729.8:ENST00000421467.6:ENST00000468263.5:ENST00000491719.5:ENST00000476938.5:ENST00000468005.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	42	2	2.60296	2.764805	2.92665	0.0267851	0.0086017	0.123349	0.083729
chr16	74659541	74659640	6525730	0	-	0.424242	(0.408,0.44]	chr16	631913	71	INTRON	INTRON	RFWD3	ENSG00000168411.14	ENST00000361070.9:ENST00000571750.5:ENST00000572337.5	protein_coding	protein_coding	protein_coding	protein_coding	3	57	2	2.07919	2.76469	3.45019	0.0291499	0.00152664	0.14147	0.0353936
chr9	70275221	70275320	4139330	0	+	0.434343	(0.408,0.44]	chr9	377236	69	INTRON	INTRON	SMC5	ENSG00000198887.9	ENST00000361138.7	protein_coding	protein_coding	protein_coding	protein_coding	3	57	2	2.07919	2.76469	3.45019	0.0291499	0.00152664	0.14147	0.0353936
chr12	116271565	116271665	5425490	0	-	0.48	(0.476,0.515]	chr12	518291	335	INTRON	INTRON	MED13L	ENSG00000123066.9	ENST00000281928.9:ENST00000650226.1:ENST00000548743.2:ENST00000551197.2:ENST00000650375.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	74	2	2.03337	2.76462	3.49587	0.00851546	0.00120011	0.0833995	0.0315806
chr20	34421039	34421137	7259698	0	+	0.387755	(0.378,0.408]	chr20	737454	6	INTRON	INTRON	ITCH	ENSG00000078747.16	ENST00000374864.10:ENST00000535650.7:ENST00000670516.1:ENST00000665484.1:ENST00000664852.1:ENST00000660337.1:ENST00000665428.1:ENST00000262650.10:ENST00000662871.1:ENST00000665346.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	91	2	2.60363	2.76436	2.92509	0.00167715	0.00153353	0.0370386	0.0361717
chr1	244860046	244860142	673060	0	-	0.541667	(0.515,0.57]	chr1	79630	8	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	HNRNPU	ENSG00000153187.20	ENST00000649899.1:ENST00000638230.1:ENST00000640306.1:ENST00000444376.7:ENST00000640218.2:ENST00000639628.2:ENST00000440865.2:ENST00000638952.1:ENST00000638716.1:ENST00000366525.8:ENST00000639880.1:ENST00000283179.14:ENST00000638475.1:ENST00000476241.2:ENST00000640001.1:ENST00000640056.1:ENST00000638301.1:ENST00000639667.1:ENST00000465881.2:ENST00000638589.1:ENST00000640440.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	18	248	2	2.64029	2.76434	2.88839	1.71134e-5	1.20855e-5	0.00331443	0.00258123
chr3	138787280	138787380	1831024	0	-	0.53	(0.515,0.57]	chr3	184056	168	INTRON	INTRON	PIK3CB	ENSG00000051382.9	ENST00000674063.1:ENST00000477593.5:ENST00000462898.5:ENST00000483968.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	75	2	2.40178	2.764255	3.12673	0.00382306	3.95089e-4	0.0542786	0.0178567
chr12	64443384	64443483	5153299	0	+	0.313131	(0.28,0.32]	chr12	487839	37	INTRON	INTRON	XPOT	ENSG00000184575.12	ENST00000332707.10	protein_coding	protein_coding	protein_coding	protein_coding	7	159	2	2.01853	2.764245	3.50996	0.0131536	1.72961e-5	0.0938857	0.00316166
chr12	22635057	22635156	5094841	0	+	0.484848	(0.476,0.515]	chr12	481224	90	INTRON	INTRON	ETNK1	ENSG00000139163.16	ENST00000671733.1:ENST00000335148.8:ENST00000672951.1:ENST00000266517.9:ENST00000538218.2:ENST00000673496.1:ENST00000673406.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	74	2	1.99457	2.764095	3.53362	0.009924	0.00102391	0.0877296	0.029231300000000002
chr10	50619111	50619211	4620642	0	-	0.41	(0.408,0.44]	chr10	425458	285	INTRON	INTRON	SGMS1	ENSG00000198964.14	ENST00000429490.5:ENST00000361781.7:ENST00000619438.4:ENST00000609445.5:ENST00000608287.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	88	2	2.60785	2.76409	2.92033	0.00162151	0.00146754	0.0367655	0.035104
chr10	70167525	70167625	4640865	0	-	0.47	(0.44,0.476]	chr10	426916	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	SAR1A	ENSG00000079332.15	ENST00000373242.6:ENST00000373241.9:ENST00000373239.2	protein_coding	protein_coding	protein_coding	protein_coding	15	249	2	2.55587	2.764015	2.97216	1.11161e-4	1.52819e-5	0.00945289	0.00293847
chr3	43700525	43700623	1410274	0	+	0.367347	(0.35,0.378]	chr3	147925	6	INTRON	INTRON	ABHD5	ENSG00000011198.10	ENST00000643520.1:ENST00000456453.5:ENST00000458276.7:ENST00000649763.1:ENST00000643140.1:ENST00000643500.1:ENST00000644371.2:ENST00000013894.3:ENST00000646378.1:ENST00000643477.1:ENST00000646799.1:ENST00000454293.2:ENST00000642351.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	19	351	2	2.38592	2.76389	3.14186	3.92145e-4	8.71844e-7	0.0184748	5.29862e-4
chr3	69805743	69805843	1449041	0	+	0.45	(0.44,0.476]	chr3	152789	63	INTRON	INTRON	MITF	ENSG00000187098.18	ENST00000687384.1:ENST00000693031.1:ENST00000352241.9:ENST00000642352.1:ENST00000495741.1:ENST00000429090.5:ENST00000433517.5:ENST00000472437.5:ENST00000448226.9:ENST00000689390.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	41	2	2.38219	2.76389	3.14559	0.045456	0.00384923	0.149888	0.0562562
chr16	23850467	23850567	6323903	0	+	0.54	(0.515,0.57]	chr16	605693	127	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000498058.1:ENST00000645517.1:ENST00000498739.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	27	379	2	2.74211	2.763865	2.78562	5.06083e-6	2.2364e-6	0.00166411	9.39443e-4
chr4	126593299	126593399	2236642	0	-	0.31	(0.28,0.32]	chr4	219023	1278	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	8	125	2	1.92202	2.76385	3.60568	0.00509726	0.00127168	0.0646039	0.032635
chr17	59142870	59142970	6802276	0	-	0.42	(0.408,0.44]	chr17	671859	46	INTRON	INTRON	SKA2	ENSG00000182628.13	ENST00000330137.12:ENST00000580541.1:ENST00000578105.1:ENST00000578519.5:ENST00000583927.1:ENST00000581068.5:ENST00000437036.6:ENST00000583380.5:ENST00000583976.1:ENST00000584089.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	55	2	2.11447	2.7638499999999997	3.41323	0.0285207	0.00129989	0.12666	0.0333764
chr9	111450726	111450825	4314955	0	-	0.494949	(0.476,0.515]	chr9	396832	59	INTRON	INTRON	ECPAS	ENSG00000136813.15	ENST00000684092.1:ENST00000338205.9:ENST00000259335.8:ENST00000602447.5:ENST00000602978.1	protein_coding	protein_coding	protein_coding	protein_coding	6	100	2	2.28812	2.76379	3.23946	0.00344676	2.59571e-4	0.0517761	0.014326
chr10	69202866	69202954	4445306	0	+	0.340909	(0.32,0.35]	chr10	410145	1	CDS	CDS:EXON_MRNA	SUPV3L1	ENSG00000156502.14	ENST00000359655.9	protein_coding	protein_coding	protein_coding	protein_coding	4	85	2	2.5652	2.76376	2.96232	0.00765724	0.00118924	0.075364	0.031662
chr5	140553278	140553377	2738035	0	-	0.333333	(0.32,0.35]	chr5	257846	7	INTRON	INTRON	SRA1	ENSG00000213523.12	ENST00000336283.9:ENST00000602775.5:ENST00000523259.5:ENST00000602875.5:ENST00000520427.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	85	2	2.59855	2.76374	2.92893	0.00682041	0.00138	0.0712518	0.0341261
chr21	37467191	37467290	7407235	0	+	0.40404	(0.378,0.408]	chr21	754898	105	INTRON	INTRON	DYRK1A	ENSG00000157540.22	ENST00000646523.1:ENST00000647425.1:ENST00000647188.2:ENST00000647504.1:ENST00000644942.1:ENST00000338785.8:ENST00000643624.1:ENST00000643551.1:ENST00000426672.6:ENST00000398960.7:ENST00000646548.1:ENST00000645424.1:ENST00000643854.1:ENST00000455097.6:ENST00000642309.1:ENST00000645774.1:ENST00000398956.2	protein_coding	protein_coding	protein_coding	protein_coding	6	110	2	2.42594	2.76368	3.10142	0.00428028	1.15321e-4	0.0574861	0.0092036
chr19	45110217	45110317	7079209	0	+	0.52	(0.515,0.57]	chr19	708078	14	INTRON	INTRON	PPP1R37	ENSG00000104866.11	ENST00000544069.2:ENST00000221462.9:ENST00000544897.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	64	2	2.07721	2.763675	3.45014	0.0067022	0.00116948	0.0738715	0.0312127
chr16	408649	408744	6272157	0	+	0.421053	(0.408,0.44]	chr16	598527	7	INTRON	INTRON	NME4:DECR2	ENSG00000103202.13:ENSG00000242612.7	ENST00000444498.5:ENST00000424398.6:ENST00000633923.1:ENST00000219481.10:ENST00000439661.5:ENST00000437024.5:ENST00000633348.1:ENST00000445291.5:ENST00000461947.5:ENST00000465166.1:ENST00000429116.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	41	2	2.43988	2.76363	3.08738	0.0398236	0.00478231	0.143072	0.0636201
chr19	16838590	16838689	7027459	0	+	0.414141	(0.408,0.44]	chr19	699470	66	INTRON	INTRON	SIN3B	ENSG00000127511.10	ENST00000248054.10:ENST00000379803.5:ENST00000596802.5	protein_coding	protein_coding	protein_coding	protein_coding	2	41	2	2.43988	2.76363	3.08738	0.0398236	0.00478231	0.143072	0.0636201
chr2	127484973	127485073	1224312	0	-	0.43	(0.408,0.44]	chr2	130313	34	INTRON	INTRON	IWS1	ENSG00000163166.15	ENST00000412979.1:ENST00000637187.1:ENST00000295321.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	41	2	2.43988	2.76363	3.08738	0.0398236	0.00478231	0.143072	0.0636201
chr1	17414510	17414608	384728	0	-	0.27551	[0,0.28]	chr1	45459	4	INTRON	INTRON	RCC2	ENSG00000179051.14	ENST00000375436.9:ENST00000375433.3	protein_coding	protein_coding	protein_coding	protein_coding	8	178	2	2.12408	2.763465	3.40285	0.00343639	4.55412e-4	0.0539802	0.0196892
chr3	33568530	33568630	1652471	0	-	0.28	[0,0.28]	chr3	169503	14	INTRON	INTRON	CLASP2	ENSG00000163539.18	ENST00000399362.8:ENST00000682230.1:ENST00000468888.6:ENST00000359576.9:ENST00000650653.1:ENST00000480013.6:ENST00000461133.8:ENST00000635664.1	protein_coding	protein_coding	protein_coding	protein_coding	2	58	2	2.38757	2.763415	3.13926	0.0552962	0.00563224	0.165463	0.0678837
chr3	197154670	197154770	1902064	0	-	0.25	[0,0.28]	chr3	190624	45	INTRON	INTRON	DLG1	ENSG00000075711.21	ENST00000667157.1:ENST00000346964.6:ENST00000656428.1:ENST00000663148.1:ENST00000655488.1:ENST00000357674.9:ENST00000671185.1:ENST00000658701.1:ENST00000667104.1:ENST00000661336.1:ENST00000669565.1:ENST00000670455.1:ENST00000656087.1:ENST00000670366.1:ENST00000653583.1:ENST00000653795.1:ENST00000671246.1:ENST00000661453.1:ENST00000665728.1:ENST00000664564.1:ENST00000653331.1:ENST00000660432.1:ENST00000660898.1:ENST00000657381.1:ENST00000659221.1:ENST00000654737.1:ENST00000669332.1:ENST00000659716.1:ENST00000660553.1:ENST00000664991.1:ENST00000419354.5:ENST00000661440.1:ENST00000667971.1:ENST00000670935.1:ENST00000668578.1:ENST00000666007.1:ENST00000661229.1:ENST00000660237.1:ENST00000657098.1:ENST00000661013.1:ENST00000436682.6:ENST00000452595.5:ENST00000662727.1:ENST00000422288.6:ENST00000448528.6:ENST00000443183.5:ENST00000656944.1:ENST00000392382.6:ENST00000450955.5:ENST00000658155.1:ENST00000669714.1:ENST00000654733.1:ENST00000469073.2:ENST00000419227.5:ENST00000392381.7:ENST00000471733.5:ENST00000419553.6:ENST00000447466.1:ENST00000661808.1:ENST00000453607.5:ENST00000456699.6:ENST00000392380.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	58	2	2.38757	2.763415	3.13926	0.0552962	0.00563224	0.165463	0.0678837
chr6	2962529	2962620	3047639	0	-	0.373626	(0.35,0.378]	chr6	283589	1	INTRON	INTRON	SERPINB6	ENSG00000124570.21	ENST00000643098.1:ENST00000380546.7:ENST00000380539.7:ENST00000380529.5:ENST00000649845.1:ENST00000644178.1:ENST00000612421.3:ENST00000616722.4:ENST00000642543.1:ENST00000644388.1:ENST00000380520.6:ENST00000645580.1:ENST00000644693.1:ENST00000644828.1:ENST00000646775.1:ENST00000645421.1:ENST00000643227.1:ENST00000646688.1:ENST00000644777.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	60	2	2.72497	2.7633799999999997	2.80179	0.0198266	0.00223906	0.109608	0.0435144
chr11	62857252	62857352	4799339	0	+	0.5	(0.476,0.515]	chr11	444781	4	INTRON	INTRON	SLC3A2	ENSG00000168003.18	ENST00000680729.1:ENST00000680002.1:ENST00000681467.1:ENST00000377890.6:ENST00000538084.2:ENST00000681569.1:ENST00000680725.1:ENST00000377891.6:ENST00000377889.6:ENST00000681215.1:ENST00000535296.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	60	2	2.65268	2.76337	2.87406	0.0201975	0.00188729	0.121243	0.0391691
chr1	246902024	246902124	681656	0	-	0.39	(0.378,0.408]	chr1	80000	1	SS5_PROX	SS5_PROX:INTRON	AHCTF1	ENSG00000153207.16	ENST00000648844.2:ENST00000326225.3:ENST00000366508.5	protein_coding	protein_coding	protein_coding	protein_coding	2	42	2	2.53503	2.763365	2.9917	0.0319942	0.0068789	0.13174	0.0749442
chr21	38003146	38003246	7462911	0	-	0.4	(0.378,0.408]	chr21	760269	498	INTRON	INTRON	DSCR4	ENSG00000184029.9	ENST00000398948.5	lncRNA	lncRNA	lncRNA	lncRNA	2	42	2	2.53503	2.763365	2.9917	0.0319942	0.0068789	0.13174	0.0749442
chr3	195988595	195988694	1896958	0	-	0.393939	(0.378,0.408]	chr3	189877	16	INTRON	INTRON	SDHAP1	ENSG00000185485.14	ENST00000427841.5:ENST00000440850.5:ENST00000413474.5:ENST00000435731.5:ENST00000427415.1	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript:transcribed_unprocessed_pseudogene	2	42	2	2.53503	2.763365	2.9917	0.0319942	0.0068789	0.13174	0.0749442
chr6	89764021	89764120	3161464	0	-	0.383838	(0.378,0.408]	chr6	294808	11	INTRON	INTRON	MDN1	ENSG00000112159.12	ENST00000369393.8:ENST00000629399.2:ENST00000439638.1	protein_coding	protein_coding	protein_coding	protein_coding	2	42	2	2.53503	2.763365	2.9917	0.0319942	0.0068789	0.13174	0.0749442
chr7	11055347	11055446	3283421	0	+	0.40404	(0.378,0.408]	chr7	304981	32	INTRON	INTRON	PHF14	ENSG00000106443.17	ENST00000642461.1:ENST00000634607.2:ENST00000403050.7:ENST00000521747.5:ENST00000423760.6:ENST00000490957.5:ENST00000481418.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	42	2	2.53503	2.763365	2.9917	0.0319942	0.0068789	0.13174	0.0749442
chr9	130123518	130123618	4211667	0	+	0.4	(0.378,0.408]	chr9	386081	85	INTRON	INTRON	GPR107	ENSG00000148358.20	ENST00000372406.5:ENST00000372410.7:ENST00000347136.11:ENST00000493417.5:ENST00000610997.1:ENST00000483935.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	42	2	2.53503	2.763365	2.9917	0.0319942	0.0068789	0.13174	0.0749442
chrX	71293141	71293235	7678100	0	+	0.382979	(0.378,0.408]	chrX	786087	1	SS5_PROX	SS5_PROX:INTRON	NONO	ENSG00000147140.17	ENST00000677446.1:ENST00000677274.1:ENST00000535149.5:ENST00000420903.6:ENST00000678335.1:ENST00000678830.1:ENST00000677826.1:ENST00000473525.2:ENST00000678437.1:ENST00000676499.1:ENST00000676495.1:ENST00000678323.1:ENST00000677766.1:ENST00000679267.1:ENST00000373856.8:ENST00000679254.1:ENST00000677879.1:ENST00000677245.1:ENST00000373841.5:ENST00000276079.13:ENST00000679029.1:ENST00000677218.1:ENST00000676797.1:ENST00000679062.1:ENST00000678660.1:ENST00000677014.1:ENST00000678231.1:ENST00000474431.5:ENST00000677612.1:ENST00000677977.1:ENST00000471419.7:ENST00000472185.1:ENST00000413858.5:ENST00000486613.6:ENST00000450092.6:ENST00000454976.2:ENST00000418921.1:ENST00000490044.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	42	2	2.53503	2.763365	2.9917	0.0319942	0.0068789	0.13174	0.0749442
chr3	11404126	11404226	1365732	0	+	0.46	(0.44,0.476]	chr3	143938	237	INTRON	INTRON	ATG7	ENSG00000197548.13	ENST00000693202.1:ENST00000435760.6:ENST00000685771.1:ENST00000354449.7:ENST00000354956.9:ENST00000446450.6:ENST00000414717.5:ENST00000427759.5:ENST00000446110.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	41	2	2.66433	2.76332	2.86231	0.0194358	0.012214	0.119831	0.0910127
chr3	143044472	143044571	1529537	0	+	0.454545	(0.44,0.476]	chr3	159459	8	INTRON	INTRON	U2SURP	ENSG00000163714.18	ENST00000488497.7:ENST00000473835.7:ENST00000493598.6:ENST00000463563.6:ENST00000480029.5:ENST00000467348.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	41	2	2.66433	2.76332	2.86231	0.0194358	0.012214	0.119831	0.0910127
chr3	179352731	179352830	1566979	0	+	0.525253	(0.515,0.57]	chr3	162075	3	INTRON	INTRON	MFN1	ENSG00000171109.19	ENST00000471841.6:ENST00000357390.8:ENST00000467174.6:ENST00000263969.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	56	2	2.27116	2.763315	3.25547	0.00601759	0.00261721	0.0700813	0.0455413
chr3	129432266	129432357	1815541	0	-	0.549451	(0.515,0.57]	chr3	182536	2	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	MBD4	ENSG00000129071.10	ENST00000429544.7:ENST00000249910.5:ENST00000393278.6:ENST00000503197.5:ENST00000509828.1:ENST00000507208.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	75	2	2.3252100000000002	2.76331	3.20141	0.00525266	2.65803e-4	0.0633615	0.0144243
chr20	35774187	35774287	7262904	0	+	0.55	(0.515,0.57]	chr20	738051	3	SS3_PROX	SS3_PROX:INTRON	PHF20	ENSG00000025293.17	ENST00000461122.5:ENST00000461405.1:ENST00000374012.8:ENST00000452270.5:ENST00000374000.8:ENST00000339089.10:ENST00000481202.5:ENST00000617560.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	47	2	2.21273	2.763305	3.31388	0.0196151	0.00174704	0.109486	0.0386026
chr7	116885233	116885332	3385591	0	+	0.333333	(0.32,0.35]	chr7	317042	47	INTRON	INTRON	CAPZA2	ENSG00000198898.15	ENST00000464223.5:ENST00000484325.1:ENST00000414148.6:ENST00000361183.8:ENST00000449080.5:ENST00000426421.5:ENST00000490693.5:ENST00000417431.5:ENST00000461878.5:ENST00000464669.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	77	2	2.53533	2.76329	2.99125	0.00958447	0.00233994	0.0820838	0.0442989
chr12	53007296	53007396	5141421	0	+	0.45	(0.44,0.476]	chr12	484964	4	INTRON	INTRON	EIF4B	ENSG00000063046.18	ENST00000551527.5:ENST00000549077.5:ENST00000549645.5:ENST00000262056.14:ENST00000420463.7:ENST00000551002.5:ENST00000416762.7:ENST00000550704.5:ENST00000549481.5:ENST00000552490.5:ENST00000550390.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	128	2	2.33743	2.7632399999999997	3.18905	0.00103188	3.33091e-4	0.029231300000000002	0.0162254
chr2	130132668	130132767	863599	0	+	0.424242	(0.408,0.44]	chr2	96903	25	INTRON	INTRON	MED15P9	ENSG00000223760.4	ENST00000427638.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	7	121	2	2.69846	2.7632149999999998	2.82797	0.00127877	1.76514e-4	0.0326395	0.0115835
chr12	116260578	116260678	5425380	0	-	0.31	(0.28,0.32]	chr12	518291	225	INTRON	INTRON	MED13L	ENSG00000123066.9	ENST00000281928.9:ENST00000650226.1:ENST00000548743.2:ENST00000551197.2:ENST00000650375.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	52	2	2.2609	2.763205	3.26551	0.0671429	0.0030714	0.183051	0.0509893
chr6	147221258	147221358	2988876	0	+	0.26	[0,0.28]	chr6	280001	148	INTRON	INTRON	STXBP5	ENSG00000164506.15	ENST00000321680.11:ENST00000367481.7:ENST00000546097.5:ENST00000367480.7	protein_coding	protein_coding	protein_coding	protein_coding	6	123	2	1.56529	2.763205	3.96112	0.0363075	4.33342e-4	0.153238	0.0190829
chr15	41355538	41355638	6005005	0	+	0.41	(0.408,0.44]	chr15	571320	1	SS3_PROX	SS3_PROX:INTRON	NUSAP1	ENSG00000137804.14	ENST00000668273.1:ENST00000260359.10:ENST00000558123.5:ENST00000414849.6:ENST00000450592.6:ENST00000559596.6:ENST00000560747.5:ENST00000560177.5:ENST00000557840.5:ENST00000560898.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	41	2	2.74518	2.7632	2.78122	0.015812	0.0152229	0.108535	0.101453
chr21	44965141	44965240	7417713	0	+	0.424242	(0.408,0.44]	chr21	756231	46	INTRON	INTRON	SLX9	ENSG00000160256.13	ENST00000397826.7:ENST00000458015.1:ENST00000291634.11:ENST00000479127.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	41	2	2.74518	2.7632	2.78122	0.015812	0.0152229	0.108535	0.101453
chr4	143452079	143452179	2055243	0	+	0.41	(0.408,0.44]	chr4	203791	113	INTRON	INTRON	GAB1	ENSG00000109458.9	ENST00000262995.8:ENST00000262994.9:ENST00000505913.5:ENST00000512843.1:ENST00000507070.5:ENST00000510615.1:ENST00000508833.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	41	2	2.74518	2.7632	2.78122	0.015812	0.0152229	0.108535	0.101453
chr5	12600377	12600477	2318838	0	+	0.42	(0.408,0.44]	chr5	224782	42	INTRON	INTRON	LINC01194	ENSG00000248131.6	ENST00000513051.6:ENST00000664069.1:ENST00000505196.1:ENST00000505877.5	lncRNA	lncRNA	lncRNA	lncRNA	2	41	2	2.74518	2.7632	2.78122	0.015812	0.0152229	0.108535	0.101453
chr5	146161563	146161660	2747198	0	-	0.412371	(0.408,0.44]	chr5	258869	7	INTRON	INTRON	LARS1	ENSG00000133706.19	ENST00000674174.1:ENST00000674170.1:ENST00000674479.1:ENST00000674309.1:ENST00000674218.1:ENST00000674467.1:ENST00000674290.1:ENST00000674447.1:ENST00000674270.1:ENST00000674383.1:ENST00000674191.1:ENST00000674158.1:ENST00000394434.7:ENST00000674398.1:ENST00000674277.1:ENST00000274562.13:ENST00000510191.5:ENST00000674310.1:ENST00000512412.2:ENST00000674417.1:ENST00000674450.1:ENST00000674412.1:ENST00000618084.2:ENST00000511505.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	41	2	2.74518	2.7632	2.78122	0.015812	0.0152229	0.108535	0.101453
chr7	101839462	101839562	3366583	0	+	0.43	(0.408,0.44]	chr7	315215	201	INTRON	INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000497815.5:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000607092.1:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000558469.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	41	2	2.74518	2.7632	2.78122	0.015812	0.0152229	0.108535	0.101453
chr10	5431426	5431526	4384049	0	+	0.39	(0.378,0.408]	chr10	404406	18	INTRON	INTRON	NET1	ENSG00000173848.19	ENST00000355029.9	protein_coding	protein_coding	protein_coding	protein_coding	2	42	2	2.66785	2.763195	2.85854	0.0224639	0.0107837	0.11692	0.0920575
chr12	50563608	50563708	5137736	0	+	0.49	(0.476,0.515]	chr12	484468	580	INTRON	INTRON	DIP2B	ENSG00000066084.13	ENST00000301180.10:ENST00000549620.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	65	2	2.06898	2.763045	3.45711	0.0137491	0.00140905	0.10247	0.0340865
chr6	17630614	17630710	3065432	0	-	0.489583	(0.476,0.515]	chr6	284782	7	INTRON	INTRON	NUP153	ENSG00000124789.12	ENST00000613258.4:ENST00000537253.5:ENST00000262077.3	protein_coding	protein_coding	protein_coding	protein_coding	4	65	2	2.06898	2.763045	3.45711	0.0137491	0.00140905	0.10247	0.0340865
chr7	23439295	23439395	3503355	0	-	0.5	(0.476,0.515]	chr7	326910	81	INTRON	INTRON	IGF2BP3	ENSG00000136231.14	ENST00000258729.8:ENST00000421467.6:ENST00000468263.5:ENST00000491719.5:ENST00000476938.5:ENST00000468005.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	65	2	2.06898	2.763045	3.45711	0.0137491	0.00140905	0.10247	0.0340865
chr5	146145795	146145894	2747028	0	-	0.313131	(0.28,0.32]	chr5	258826	12	EXON_MRNA	EXON_MRNA:INTRON	LARS1	ENSG00000133706.19	ENST00000674174.1:ENST00000674170.1:ENST00000674479.1:ENST00000674309.1:ENST00000674218.1:ENST00000674467.1:ENST00000674290.1:ENST00000674447.1:ENST00000674270.1:ENST00000674383.1:ENST00000674191.1:ENST00000674158.1:ENST00000506231.6:ENST00000674471.1:ENST00000394434.7:ENST00000674398.1:ENST00000674277.1:ENST00000274562.13:ENST00000510191.5:ENST00000504323.6:ENST00000674310.1:ENST00000512412.2:ENST00000508667.5:ENST00000507095.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	135	2	2.4323	2.762955	3.09361	0.00540168	1.79432e-4	0.0644179	0.0116696
chr22	19065558	19065655	7551443	0	-	0.587629	(0.57,1]	chr22	771888	1	SS3_PROX	SS3_PROX:SS5_PROX:INTRON	DGCR2	ENSG00000070413.20	ENST00000537045.5:ENST00000545799.5:ENST00000263196.12:ENST00000389262.8:ENST00000473832.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	37	2	2.49621	2.76294	3.02967	0.00471306	0.00209832	0.0631419	0.0413494
chr12	24945816	24945916	5297880	0	-	0.35	(0.32,0.35]	chr12	503886	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	BCAT1	ENSG00000060982.15	ENST00000261192.12:ENST00000342945.9:ENST00000539780.5:ENST00000546285.1:ENST00000355164.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	88	2	1.80306	2.76291	3.72276	0.0246393	3.96144e-4	0.12011	0.0178616
chr12	116276663	116276759	5425543	0	-	0.59375	(0.57,1]	chr12	518298	3	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	MED13L	ENSG00000123066.9	ENST00000281928.9:ENST00000650226.1:ENST00000548743.2:ENST00000551197.2	protein_coding	protein_coding	protein_coding	protein_coding	6	55	2	2.60916	2.7629099999999998	2.91666	0.00119055	2.13552e-4	0.0315806	0.0128246
chr20	32543741	32543841	7326504	0	-	0.47	(0.44,0.476]	chr20	746140	75	INTRON	INTRON	NOL4L	ENSG00000197183.15	ENST00000621426.7:ENST00000201961.6	protein_coding	protein_coding	protein_coding	protein_coding	3	54	2	2.49823	2.76287	3.02751	0.00718224	0.00715968	0.0756118	0.0723634
chr2	200862062	200862162	1310090	0	-	0.31	(0.28,0.32]	chr2	137049	2	SS3_PROX	SS3_PROX:INTRON	CLK1	ENSG00000013441.17	ENST00000321356.9:ENST00000473565.5:ENST00000432425.5:ENST00000409403.6:ENST00000434813.3:ENST00000492793.1:ENST00000481641.1:ENST00000482590.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	116	2	1.53798	2.762825	3.98767	0.0287839	2.63067e-4	0.140044	0.0149561
chr1	51875387	51875486	455264	0	-	0.343434	(0.32,0.35]	chr1	54631	126	INTRON	INTRON	NRDC	ENSG00000078618.23	ENST00000354831.11:ENST00000539524.5:ENST00000352171.12:ENST00000491410.1:ENST00000468722.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	47	2	2.4458	2.7627750000000004	3.07975	0.0425977	0.00554235	0.148082	0.0674105
chr1	90986167	90986267	502169	0	-	0.35	(0.32,0.35]	chr1	59504	34	INTRON	INTRON	ZNF644	ENSG00000122482.22	ENST00000370440.5:ENST00000337393.10:ENST00000347275.9:ENST00000361321.5:ENST00000467231.5:ENST00000498303.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	47	2	2.4458	2.7627750000000004	3.07975	0.0425977	0.00554235	0.148082	0.0674105
chr8	30587357	30587457	3931509	0	-	0.34	(0.32,0.35]	chr8	360124	18	INTRON	INTRON	GTF2E2	ENSG00000197265.9	ENST00000355904.9:ENST00000522833.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	47	2	2.4458	2.7627750000000004	3.07975	0.0425977	0.00554235	0.148082	0.0674105
chr22	41831173	41831272	7525987	0	+	0.474747	(0.44,0.476]	chr22	769348	55	UTR3	UTR3:EXON_MRNA	CCDC134	ENSG00000100147.14	ENST00000255784.6	protein_coding	protein_coding	protein_coding	protein_coding	3	57	2	2.63508	2.762775	2.89047	0.00955699	0.00501007	0.0863913	0.0618077
chr22	21836533	21836633	7561075	0	-	0.48	(0.476,0.515]	chr22	773388	283	INTRON	INTRON	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	11	115	2	1.41597	2.762765	4.10956	0.0199822	6.69931e-5	0.120668	0.00721005
chr16	23885182	23885282	6324252	0	+	0.32	(0.28,0.32]	chr16	605697	160	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000645517.1:ENST00000498739.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	70	2	2.1895	2.76273	3.33596	0.0227063	0.00342993	0.124921	0.0517761
chr6	35362134	35362234	2852174	0	+	0.36	(0.35,0.378]	chr6	269491	146	INTRON	INTRON	PPARD	ENSG00000112033.14	ENST00000418635.6:ENST00000448077.6:ENST00000360694.8:ENST00000311565.4:ENST00000337400.6	protein_coding	protein_coding	protein_coding	protein_coding	3	59	2	2.63527	2.76265	2.89003	0.0122391	0.00443588	0.0910127	0.061054
chr20	38430598	38430698	7342265	0	-	0.39	(0.378,0.408]	chr20	748320	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	SNHG17	ENSG00000196756.14	ENST00000654008.2:ENST00000658076.1:ENST00000662982.2:ENST00000456953.7:ENST00000654183.2:ENST00000663540.2:ENST00000651115.2:ENST00000660885.2:ENST00000662213.1:ENST00000665233.2:ENST00000666268.2:ENST00000665735.1:ENST00000660558.2:ENST00000691280.1:ENST00000658488.2:ENST00000688336.1:ENST00000668054.2:ENST00000690441.1:ENST00000655520.2:ENST00000687490.1:ENST00000664626.1:ENST00000658051.1:ENST00000668042.1:ENST00000686971.1:ENST00000663187.1:ENST00000657868.1:ENST00000663534.1:ENST00000689917.1:ENST00000664073.2:ENST00000653697.1:ENST00000656320.1:ENST00000686814.1:ENST00000417578.7:ENST00000654853.1:ENST00000436764.7:ENST00000668482.2:ENST00000671249.1:ENST00000655692.1:ENST00000693250.1:ENST00000691368.1:ENST00000693227.1:ENST00000690361.1:ENST00000670051.1:ENST00000667912.1:ENST00000693665.1:ENST00000665181.1:ENST00000687532.1:ENST00000691386.1:ENST00000693684.1:ENST00000666331.1:ENST00000669480.1:ENST00000658905.1:ENST00000661252.1:ENST00000669137.1:ENST00000688133.1:ENST00000689414.1:ENST00000691314.1:ENST00000669033.1:ENST00000686145.1:ENST00000653938.1:ENST00000663784.1:ENST00000665003.1:ENST00000656023.1:ENST00000692262.1:ENST00000414142.5:ENST00000670958.1:ENST00000657216.2:ENST00000664636.1:ENST00000657843.1:ENST00000423536.6:ENST00000666419.1:ENST00000413755.5	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	7	131	2	2.69945	2.762515	2.82558	9.70462e-4	3.09716e-4	0.0286926	0.0162047
chr22	21770703	21770801	7560409	0	-	0.255102	[0,0.28]	chr22	773354	10	INTRON	INTRON	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	4	94	2	2.37401	2.762515	3.15102	0.00767596	0.00568456	0.0753665	0.0678837
chr12	116096168	116096268	5423728	0	-	0.48	(0.476,0.515]	chr12	518246	1	SS5_PROX	SS5_PROX:INTRON	MED13L	ENSG00000123066.9	ENST00000281928.9:ENST00000650226.1:ENST00000648737.1:ENST00000548743.2:ENST00000647567.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	87	2	2.38129	2.76246	3.14363	0.00474233	4.25082e-4	0.0600445	0.018441
chr18	51032217	51032317	6901641	0	+	0.35	(0.32,0.35]	chr18	683840	12	INTRON	INTRON	SMAD4	ENSG00000141646.15	ENST00000588860.5:ENST00000398417.6:ENST00000589076.5:ENST00000342988.8:ENST00000590061.1:ENST00000592911.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	47	2	2.74415	2.76244	2.78073	0.0198267	0.01481	0.109608	0.106702
chr5	150505739	150505839	2519881	0	+	0.33	(0.32,0.35]	chr5	241017	71	INTRON	INTRON	NDST1	ENSG00000070614.15	ENST00000522491.1:ENST00000519157.1:ENST00000524161.1:ENST00000523767.5:ENST00000518299.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	47	2	2.74415	2.76244	2.78073	0.0198267	0.01481	0.109608	0.106702
chr11	93733970	93734063	5017250	0	-	0.290323	(0.28,0.32]	chr11	473281	5	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	TAF1D	ENSG00000166012.17	ENST00000323981.6:ENST00000526015.5:ENST00000546088.5:ENST00000393259.6:ENST00000530769.5:ENST00000525928.5:ENST00000529435.5:ENST00000540232.5:ENST00000527169.5:ENST00000530089.6:ENST00000533794.5:ENST00000529794.5:ENST00000527068.1	protein_coding	retained_intron	protein_coding	retained_intron:nonsense_mediated_decay:processed_transcript	25	499	2	2.55589	2.762365	2.96884	4.00414e-5	2.5352e-5	0.00539487	0.00394467
chr6	15257058	15257158	2823056	0	+	0.44	(0.408,0.44]	chr6	265190	77	INTRON	INTRON	JARID2	ENSG00000008083.14	ENST00000341776.7:ENST00000397311.4	protein_coding	protein_coding	protein_coding	protein_coding	5	75	2	2.19398	2.7623249999999997	3.33067	0.0043348	0.0024459	0.0600652	0.0445752
chr3	136941285	136941385	1513233	0	+	0.48	(0.476,0.515]	chr3	158212	103	INTRON	INTRON	NCK1	ENSG00000158092.7	ENST00000481752.6:ENST00000288986.6:ENST00000491539.5:ENST00000485096.5:ENST00000488930.5:ENST00000496489.5:ENST00000469404.1:ENST00000467911.1	protein_coding	protein_coding	protein_coding	protein_coding	3	58	2	1.91817	2.76222	3.60627	0.0459211	7.49088e-4	0.164984	0.0251179
chr22	47710847	47710947	7540156	0	+	0.4	(0.378,0.408]	chr22	770718	1	SS5_PROX	SS5_PROX:INTRON	ENSG00000224271	ENSG00000224271.7	ENST00000664761.1:ENST00000651071.1:ENST00000650683.1:ENST00000651536.1:ENST00000652499.1:ENST00000652656.1:ENST00000652072.1:ENST00000651445.1:ENST00000423737.5:ENST00000650660.1:ENST00000651056.1:ENST00000652611.1:ENST00000652399.1:ENST00000652123.1:ENST00000651311.1:ENST00000651458.1:ENST00000652505.1:ENST00000652702.2:ENST00000652334.1:ENST00000652030.2:ENST00000651403.1:ENST00000652228.1:ENST00000651124.1:ENST00000650972.1:ENST00000651985.1:ENST00000651637.1:ENST00000650924.1:ENST00000651003.1:ENST00000652168.1:ENST00000651948.2:ENST00000651293.1:ENST00000651939.1:ENST00000650787.1:ENST00000651517.1:ENST00000651662.1:ENST00000652690.1:ENST00000651638.1:ENST00000670853.1:ENST00000652750.1:ENST00000652080.1:ENST00000651294.1:ENST00000652164.1:ENST00000651538.1:ENST00000650775.1:ENST00000651983.1:ENST00000651033.1:ENST00000651584.1:ENST00000650884.1:ENST00000651270.1	lncRNA	lncRNA	lncRNA	lncRNA	4	76	2	2.73557	2.7621200000000004	2.78867	0.00360869	0.00226991	0.0533855	0.0437013
chr4	76147640	76147707	2164443	0	-	0.373134	(0.35,0.378]	chr4	213504	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NUP54	ENSG00000138750.16	ENST00000695546.1:ENST00000695547.1:ENST00000695552.1:ENST00000507257.6:ENST00000264883.8:ENST00000515460.6:ENST00000695554.1:ENST00000695553.1:ENST00000695551.1:ENST00000695556.1:ENST00000695549.1:ENST00000695550.1:ENST00000695555.1:ENST00000514987.6:ENST00000502850.5:ENST00000508465.6:ENST00000512151.5:ENST00000504173.1:ENST00000695557.1:ENST00000514307.5:ENST00000508583.6:ENST00000506098.5:ENST00000510884.5:ENST00000513352.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	71	2	2.39519	2.76212	3.12905	0.00566312	0.00401951	0.0653997	0.0578189
chr16	21870384	21870484	6461947	0	-	0.35	(0.32,0.35]	chr16	623467	42	INTRON	INTRON	NPIPB4	ENSG00000185864.18	ENST00000543449.1:ENST00000538859.1	protein_coding	processed_transcript	protein_coding	processed_transcript	8	145	2	1.90543	2.76211	3.61879	0.00676396	8.64149e-5	0.0741642	0.0083541
chr19	10665693	10665792	7013326	0	+	0.525253	(0.515,0.57]	chr19	696757	98	INTRON	INTRON	ILF3	ENSG00000129351.17	ENST00000449870.5:ENST00000587928.5:ENST00000407004.7:ENST00000589998.5:ENST00000589600.5:ENST00000589283.5:ENST00000590009.5:ENST00000593199.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	72	2	1.64415	2.76209	3.88003	0.0231656	1.52864e-4	0.127036	0.0112857
chr6	31835872	31835951	2843842	0	+	0.544304	(0.515,0.57]	chr6	267908	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SNHG32	ENSG00000204387.14	ENST00000375640.7:ENST00000375641.6:ENST00000375635.6:ENST00000375638.7:ENST00000648677.1:ENST00000375642.6:ENST00000614363.4:ENST00000395789.5:ENST00000375633.5	lncRNA	lncRNA	lncRNA	lncRNA	4	59	2	1.7492	2.7620500000000003	3.7749	0.0382504	2.59829e-4	0.15832	0.0148796
chr1	28894137	28894237	58750	0	+	0.36	(0.35,0.378]	chr1	7616	3	SS5_PROX	SS5_PROX:INTRON	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000647918.1:ENST00000646800.1:ENST00000644342.1:ENST00000646189.1:ENST00000482464.6:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000646260.1:ENST00000373798.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	109	2	2.44961	2.7619949999999998	3.07438	0.0014359	9.54868e-4	0.0347139	0.0282401
chr11	31505268	31505367	4939198	0	-	0.373737	(0.35,0.378]	chr11	462601	167	INTRON	INTRON	IMMP1L	ENSG00000148950.11	ENST00000532287.6:ENST00000534812.5:ENST00000526776.5:ENST00000278200.5:ENST00000648582.1:ENST00000533642.1:ENST00000527184.5:ENST00000528161.5:ENST00000532624.5:ENST00000529749.5:ENST00000530023.5:ENST00000531693.1:ENST00000532668.1:ENST00000533921.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	109	2	2.44961	2.7619949999999998	3.07438	0.0014359	9.54868e-4	0.0347139	0.0282401
chr3	73019328	73019428	1452182	0	+	0.36	(0.35,0.378]	chr3	152962	33	INTRON	INTRON	PPP4R2	ENSG00000163605.15	ENST00000482242.5:ENST00000356692.10:ENST00000470976.1:ENST00000488810.5:ENST00000476505.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	81	2	1.97697	2.761905	3.54684	0.0109711	0.00119142	0.092635	0.0315806
chr1	54398363	54398463	463681	0	-	0.39	(0.378,0.408]	chr1	55784	417	INTRON	INTRON	SSBP3	ENSG00000157216.16	ENST00000610401.5:ENST00000357475.9:ENST00000371319.8:ENST00000417664.7:ENST00000533946.6:ENST00000371320.8:ENST00000525990.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	69	2	1.94559	2.7619	3.57821	0.0211434	9.60401e-4	0.122929	0.0282401
chr19	3426172	3426272	7000224	0	+	0.45	(0.44,0.476]	chr19	694183	6	INTRON	INTRON	NFIC	ENSG00000141905.19	ENST00000641145.1:ENST00000589123.5:ENST00000395111.7:ENST00000586919.5:ENST00000341919.7:ENST00000443272.3:ENST00000590282.5	protein_coding	protein_coding	protein_coding	protein_coding	3	54	2	2.44514	2.7618799999999997	3.07862	0.0087381	0.0060153	0.0845538	0.0674604
chr6	4889191	4889291	2791991	0	+	0.45	(0.44,0.476]	chr6	263602	525	INTRON	INTRON	CDYL	ENSG00000153046.18	ENST00000328908.9:ENST00000491864.1:ENST00000440139.5:ENST00000483019.1:ENST00000397588.8:ENST00000472453.5:ENST00000449732.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	54	2	2.44514	2.7618799999999997	3.07862	0.0087381	0.0060153	0.0845538	0.0674604
chr1	117354	117453	352553	0	-	0.343434	(0.32,0.35]	chr1	40784	42	INTRON	INTRON	ENSG00000238009	ENSG00000238009.6	ENST00000466430.5:ENST00000477740.5:ENST00000471248.1	lncRNA	lncRNA	lncRNA	lncRNA	3	69	2	1.88468	2.761825	3.63897	0.0515071	9.34231e-4	0.176696	0.0280484
chr19	46786838	46786938	7195408	0	-	0.61	(0.57,1]	chr19	729005	2	SS5_PROX	SS5_PROX:INTRON	SLC1A5	ENSG00000105281.12	ENST00000542575.6:ENST00000412532.6	protein_coding	protein_coding	protein_coding	protein_coding	4	39	2	2.6547	2.76181	2.86892	0.00346848	0.00125753	0.0539802	0.0323608
chr8	90001492	90001561	3791756	0	+	0.637681	(0.57,1]	chr8	351680	1	CDS_START	CDS_START:CDS:UTR5:EXON_MRNA:EXON_LNCRNA	DECR1	ENSG00000104325.7	ENST00000519328.5:ENST00000517314.5:ENST00000521603.5:ENST00000523447.5:ENST00000517597.5:ENST00000519410.5:ENST00000220764.7:ENST00000522161.5:ENST00000519007.5:ENST00000520859.5:ENST00000521668.1:ENST00000518725.5:ENST00000517761.5:ENST00000520227.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	39	2	2.6547	2.76181	2.86892	0.00346848	0.00125753	0.0539802	0.0323608
chr5	181057266	181057363	2563020	0	+	0.298969	(0.28,0.32]	chr5	245228	2	INTRON	INTRON	BTNL9	ENSG00000165810.17	ENST00000327705.14:ENST00000512570.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	94	2	2.09198	2.76178	3.43158	0.00780964	0.00244075	0.0788246	0.0445752
chr22	19892356	19892453	7555813	0	-	0.649485	(0.57,1]	chr22	772497	2	INTRON	INTRON	TXNRD2	ENSG00000184470.21	ENST00000400518.5:ENST00000542719.6:ENST00000494454.5:ENST00000474308.5:ENST00000400525.6:ENST00000400521.7:ENST00000400519.6:ENST00000634537.1:ENST00000635155.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:non_stop_decay:nonsense_mediated_decay:processed_transcript	5	41	2	1.71424	2.761735	3.80923	0.0279017	1.11529e-4	0.137011	0.00945289
chr11	3380917	3380980	4722833	0	+	0.460317	(0.44,0.476]	chr11	436967	1	EXON_LNCRNA	EXON_LNCRNA	TSSC2	ENSG00000223756.8	ENST00000685598.1:ENST00000691197.1:ENST00000533775.6:ENST00000690471.1:ENST00000529482.5:ENST00000693396.1:ENST00000685130.1:ENST00000526284.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	6	106	2	2.70421	2.76171	2.81921	9.23275e-4	7.10539e-4	0.0278392	0.0243894
chr5	146144050	146144108	2747007	0	-	0.362069	(0.35,0.378]	chr5	258818	1	SS5_PROX	SS5_PROX:INTRON	LARS1	ENSG00000133706.19	ENST00000674174.1:ENST00000674170.1:ENST00000674479.1:ENST00000674309.1:ENST00000674218.1:ENST00000674467.1:ENST00000674290.1:ENST00000674447.1:ENST00000674270.1:ENST00000674383.1:ENST00000674191.1:ENST00000674158.1:ENST00000506231.6:ENST00000674471.1:ENST00000394434.7:ENST00000674398.1:ENST00000674277.1:ENST00000274562.13:ENST00000510191.5:ENST00000504323.6:ENST00000674310.1:ENST00000512412.2:ENST00000508667.5:ENST00000507095.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	96	2	2.66568	2.76166	2.85764	0.00496487	4.6759e-4	0.0615009	0.0195867
chr6	85623379	85623476	3151250	0	-	0.525773	(0.515,0.57]	chr6	293883	3	INTRON	INTRON	ENSG00000271793:SYNCRIP	ENSG00000271793.2:ENSG00000135316.19	ENST00000682083.1:ENST00000683074.1:ENST00000681965.1:ENST00000682504.1:ENST00000682106.1:ENST00000683364.1:ENST00000683436.1:ENST00000684220.1:ENST00000683909.1:ENST00000684462.1:ENST00000616122.5:ENST00000678528.1:ENST00000676637.1:ENST00000677771.1:ENST00000355238.11:ENST00000678878.1:ENST00000677481.1:ENST00000677646.1:ENST00000676630.1:ENST00000678618.1:ENST00000676542.1:ENST00000677059.1:ENST00000444272.2:ENST00000678899.1:ENST00000369622.8:ENST00000678355.1:ENST00000676688.1:ENST00000677514.1:ENST00000678816.1:ENST00000678930.1:ENST00000678589.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	77	2	2.27116	2.76164	3.25212	0.00601759	2.5577e-4	0.0700813	0.0148225
chrX	44901585	44901685	7648886	0	+	0.27	[0,0.28]	chrX	782726	272	INTRON	INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000675440.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000621147.5:ENST00000475233.1:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	78	2	2.6632	2.76164	2.86008	0.0177015	0.00515076	0.105304	0.0650394
chr4	128855797	128855897	2044735	0	+	0.43	(0.408,0.44]	chr4	203033	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	JADE1	ENSG00000077684.16	ENST00000226319.11:ENST00000511647.5:ENST00000452328.6:ENST00000512960.5:ENST00000610919.4:ENST00000413543.6:ENST00000611140.4	protein_coding	protein_coding	protein_coding	protein_coding	4	67	2	2.15938	2.7615800000000004	3.36378	0.011260300000000001	0.0016048	0.0884004	0.0367961
chr7	100339289	100339389	3364369	0	+	0.59	(0.57,1]	chr7	314636	4	SS5_PROX	SS5_PROX:INTRON	STAG3L5P:STAG3L5P-PVRIG2P-PILRB	ENSG00000242294.6:ENSG00000272752.6	ENST00000473757.5:ENST00000470714.5:ENST00000310771.8:ENST00000483329.6:ENST00000422479.5:ENST00000444874.5:ENST00000488972.6:ENST00000493499.1	lncRNA	retained_intron	lncRNA:transcribed_unprocessed_pseudogene	retained_intron:lncRNA:processed_transcript	5	42	2	2.29448	2.76152	3.22856	0.00237038	0.00205928	0.0438057	0.0420839
chr2	200910912	200911009	1310344	0	-	0.350515	(0.35,0.378]	chr2	137120	21	UTR3	UTR3:EXON_MRNA	ORC2	ENSG00000115942.9	ENST00000234296.7:ENST00000464147.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	83	2	1.7339	2.76151	3.78912	0.0260366	4.25686e-4	0.133676	0.0189958
chr6	147215462	147215561	2988818	0	+	0.565657	(0.515,0.57]	chr6	280001	90	INTRON	INTRON	STXBP5	ENSG00000164506.15	ENST00000321680.11:ENST00000367481.7:ENST00000546097.5:ENST00000367480.7	protein_coding	protein_coding	protein_coding	protein_coding	6	90	2	2.64662	2.76144	2.87626	0.00136224	5.1273e-4	0.0339121	0.0208667
chr13	28140486	28140586	5460848	0	+	0.37	(0.35,0.378]	chr13	523235	10	INTRON	INTRON	PAN3	ENSG00000152520.14	ENST00000503791.5:ENST00000380958.8:ENST00000399613.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	72	2	1.75081	2.7613950000000003	3.77198	0.0427459	2.78147e-4	0.148082	0.0148626
chr16	84711711	84711811	6410019	0	+	0.45	(0.44,0.476]	chr16	615266	25	INTRON	INTRON	USP10	ENSG00000103194.16	ENST00000562743.5:ENST00000540269.6:ENST00000563892.5:ENST00000562092.1:ENST00000569511.5:ENST00000219473.12:ENST00000570191.5:ENST00000563048.5:ENST00000562283.5:ENST00000563386.5:ENST00000569038.5:ENST00000570053.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	13	188	2	1.94518	2.761365	3.57755	0.00235957	5.59824e-6	0.0436968	0.00164301
chr3	185592054	185592153	1585329	0	+	0.414141	(0.408,0.44]	chr3	164123	15	INTRON	INTRON	SENP2	ENSG00000163904.13	ENST00000430355.5:ENST00000465201.5:ENST00000453532.5:ENST00000296257.10:ENST00000413407.5:ENST00000439684.5:ENST00000458551.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	66	2	2.03431	2.76112	3.48793	0.0154896	0.00130904	0.108998	0.0331539
chr1	223807546	223807645	642987	0	-	0.292929	(0.28,0.32]	chr1	75932	2	INTRON	INTRON	TP53BP2	ENSG00000143514.17	ENST00000343537.12:ENST00000391878.6:ENST00000494100.1:ENST00000496282.5:ENST00000473135.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	128	2	2.64977	2.76105	2.87233	0.0028269	6.70052e-4	0.0472361	0.0234992
chr11	3760826	3760926	4894797	0	-	0.37	(0.35,0.378]	chr11	458883	2	SS3_PROX	SS3_PROX:INTRON	NUP98	ENSG00000110713.17	ENST00000359171.8:ENST00000324932.12:ENST00000650171.1:ENST00000355260.7:ENST00000397004.8:ENST00000397007.8:ENST00000529379.1:ENST00000397013.2:ENST00000461047.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	44	2	2.47065	2.761005	3.05136	0.0386172	0.00578894	0.142656	0.0684334
chr17	32447141	32447237	6598369	0	+	0.375	(0.35,0.378]	chr17	641969	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	PSMD11	ENSG00000108671.11	ENST00000578213.5:ENST00000649012.1:ENST00000457654.6:ENST00000578397.5:ENST00000579451.1:ENST00000261712.8:ENST00000481992.1:ENST00000580904.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	44	2	2.47065	2.761005	3.05136	0.0386172	0.00578894	0.142656	0.0684334
chr2	61411191	61411290	1129956	0	-	0.474747	(0.44,0.476]	chr2	121491	47	INTRON	INTRON	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000453133.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	55	2	2.74063	2.76096	2.78129	0.0176095	0.00229634	0.105143	0.0439319
chr6	34893296	34893396	2849312	0	+	0.45	(0.44,0.476]	chr6	269222	33	INTRON	INTRON	ANKS1A	ENSG00000064999.15	ENST00000360359.5:ENST00000649117.1:ENST00000650178.1	protein_coding	protein_coding	protein_coding	protein_coding	3	55	2	2.74063	2.76096	2.78129	0.0176095	0.00229634	0.105143	0.0439319
chr1	1474382	1474481	1591	0	+	0.585859	(0.57,1]	chr1	364	19	INTRON	INTRON	ATAD3B	ENSG00000160072.20	ENST00000673477.1:ENST00000308647.8	protein_coding	protein_coding	protein_coding	protein_coding	3	35	2	2.36411	2.76093	3.15775	0.0408868	2.72513e-4	0.161534	0.0151392
chr1	110356131	110356231	182512	0	+	0.29	(0.28,0.32]	chr1	20256	1	SS5_PROX	SS5_PROX:INTRON	LAMTOR5-AS1	ENSG00000224699.10	ENST00000626572.2	lncRNA	lncRNA	lncRNA	lncRNA	6	128	2	2.3365	2.76092	3.18534	0.00286158	8.08132e-4	0.0494641	0.0263656
chr6	17703182	17703282	3066177	0	-	0.29	(0.28,0.32]	chr6	284872	142	INTRON	INTRON	NUP153	ENSG00000124789.12	ENST00000613258.4:ENST00000537253.5:ENST00000262077.3	protein_coding	protein_coding	protein_coding	protein_coding	4	82	2	2.25298	2.76074	3.2685	0.00791652	0.00432734	0.0797304	0.0579331
chr9	37273771	37273871	4119195	0	+	0.31	(0.28,0.32]	chr9	375389	869	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000461038.5:ENST00000488607.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	82	2	2.25298	2.76074	3.2685	0.00791652	0.00432734	0.0797304	0.0579331
chr10	59895237	59895336	4623767	0	-	0.525253	(0.515,0.57]	chr10	425682	422	INTRON	INTRON	CCDC6	ENSG00000108091.11	ENST00000263102.7	protein_coding	protein_coding	protein_coding	protein_coding	3	47	2	2.32967	2.760725	3.19178	0.0133671	0.00289534	0.0946278	0.0494641
chr2	187532569	187532669	1289306	0	-	0.53	(0.515,0.57]	chr2	135621	27	INTRON	INTRON	TFPI	ENSG00000003436.16	ENST00000233156.9:ENST00000409676.5:ENST00000339091.8:ENST00000421427.5:ENST00000437725.5:ENST00000453013.5:ENST00000417013.5:ENST00000420747.1	protein_coding	protein_coding	protein_coding	protein_coding	3	47	2	2.32967	2.760725	3.19178	0.0133671	0.00289534	0.0946278	0.0494641
chr7	152223714	152223814	3679140	0	-	0.52	(0.515,0.57]	chr7	341545	3	SS5_PROX	SS5_PROX:INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000683200.1:ENST00000682283.1:ENST00000473186.5:ENST00000679882.1:ENST00000680969.1:ENST00000681033.1:ENST00000679645.1:ENST00000684550.1:ENST00000489110.2:ENST00000681838.1:ENST00000683490.1:ENST00000684623.1:ENST00000418673.2:ENST00000684140.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	56	2	2.31902	2.76071	3.2024	0.00493032	0.00322022	0.0646039	0.0507087
chr1	167636794	167636893	247022	0	+	0.575758	(0.57,1]	chr1	29419	26	INTRON	INTRON	RCSD1	ENSG00000198771.11	ENST00000537350.5:ENST00000361496.3:ENST00000367854.8:ENST00000475127.5:ENST00000472038.1:ENST00000461790.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	23	2	2.52405	2.76067	2.99729	0.0263139	0.00538023	0.133676	0.0642754
chr16	1508401	1508494	6274493	0	+	0.591398	(0.57,1]	chr16	599368	3	INTRON	INTRON	TELO2	ENSG00000100726.15	ENST00000262319.11:ENST00000568240.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	23	2	2.52405	2.76067	2.99729	0.0263139	0.00538023	0.133676	0.0642754
chr16	85649644	85649742	6416336	0	+	0.602041	(0.57,1]	chr16	615495	5	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000635906.1:ENST00000405402.6:ENST00000411612.5:ENST00000253458.12:ENST00000393243.5	protein_coding	protein_coding	protein_coding	protein_coding	2	23	2	2.52405	2.76067	2.99729	0.0263139	0.00538023	0.133676	0.0642754
chr22	19428893	19428992	7554397	0	-	0.575758	(0.57,1]	chr22	772317	178	INTRON	INTRON	HIRA:C22orf39	ENSG00000100084.14:ENSG00000242259.9	ENST00000263208.5:ENST00000340170.8:ENST00000509549.5:ENST00000464189.5:ENST00000452818.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	23	2	2.52405	2.76067	2.99729	0.0263139	0.00538023	0.133676	0.0642754
chr7	119679261	119679361	3628129	0	-	0.32	(0.28,0.32]	chr7	337315	1788	INTRON	INTRON	LINC02476	ENSG00000225546.6	ENST00000660268.1	lncRNA	lncRNA	lncRNA	lncRNA	6	106	2	1.66498	2.760485	3.85599	0.0244852	4.63052e-4	0.131869	0.0198709
chr22	47743502	47743601	7540489	0	+	0.323232	(0.32,0.35]	chr22	770742	45	INTRON	INTRON	ENSG00000224271	ENSG00000224271.7	ENST00000664761.1:ENST00000650683.1:ENST00000651536.1:ENST00000652656.1:ENST00000652072.1:ENST00000651445.1:ENST00000423737.5:ENST00000650660.1:ENST00000651056.1:ENST00000652611.1:ENST00000652399.1:ENST00000652123.1:ENST00000651311.1:ENST00000652505.1:ENST00000652702.2:ENST00000652030.2:ENST00000651403.1:ENST00000652228.1:ENST00000651124.1:ENST00000650972.1:ENST00000651985.1:ENST00000651637.1:ENST00000650924.1:ENST00000651003.1:ENST00000651948.2:ENST00000651293.1:ENST00000651939.1:ENST00000650787.1:ENST00000651517.1:ENST00000651662.1:ENST00000651638.1:ENST00000670853.1:ENST00000652080.1:ENST00000651294.1:ENST00000652164.1:ENST00000651538.1:ENST00000651033.1:ENST00000651584.1	lncRNA	lncRNA	lncRNA	lncRNA	8	142	2	2.33471	2.7604100000000003	3.18611	9.111e-4	6.68157e-4	0.0277409	0.0235847
chr9	111923726	111923817	4184725	0	+	0.494505	(0.476,0.515]	chr9	381703	4	INTRON	INTRON	UGCG	ENSG00000148154.10	ENST00000374279.4:ENST00000495085.1:ENST00000490110.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	149	2	2.24612	2.7602349999999998	3.27435	0.00799949	4.18899e-6	0.0766625	0.00136409
chr15	79921766	79921865	6241160	0	-	0.515152	(0.476,0.515]	chr15	595788	17	EXON_LNCRNA	EXON_LNCRNA:INTRON	ST20-MTHFS:ST20:ENSG00000278600	ENSG00000259332.3:ENSG00000180953.11:ENSG00000278600.1	ENST00000615374.5:ENST00000479961.1:ENST00000494999.1:ENST00000485386.1:ENST00000618835.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	7	91	2	1.59633	2.76021	3.92409	0.0233044	1.13525e-4	0.118272	0.009124
chr7	105258108	105258208	3602591	0	-	0.55	(0.515,0.57]	chr7	336137	512	INTRON	INTRON	SRPK2	ENSG00000135250.17	ENST00000393651.8:ENST00000357311.7:ENST00000489828.5:ENST00000482897.5:ENST00000460391.5:ENST00000462282.5:ENST00000465112.5:ENST00000482862.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	35	2	2.60899	2.760195	2.9114	0.0232669	0.00826019	0.118148	0.0813266
chr11	9412863	9412962	4729700	0	+	0.383838	(0.378,0.408]	chr11	437850	24	INTRON	INTRON	IPO7	ENSG00000205339.10	ENST00000379719.8:ENST00000527431.1:ENST00000528833.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	56	2	2.51464	2.76016	3.00568	0.00811866	0.00684341	0.0766625	0.0748032
chr19	57775769	57775860	7105270	0	+	0.538462	(0.515,0.57]	chr19	713152	6	INTRON	INTRON	ZNF586	ENSG00000083828.16	ENST00000651718.1:ENST00000391702.3:ENST00000598885.5:ENST00000598183.1:ENST00000599802.1:ENST00000396154.7:ENST00000396150.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	35	2	2.68833	2.7601050000000003	2.83188	0.0184931	0.0108207	0.108861	0.0920575
chr17	27295810	27295907	6580548	0	+	0.443299	(0.44,0.476]	chr17	639598	10	INTRON	INTRON	WSB1	ENSG00000109046.15	ENST00000581440.5:ENST00000578312.5:ENST00000583742.1:ENST00000467843.6:ENST00000579733.5:ENST00000583193.5:ENST00000262394.7:ENST00000427287.6:ENST00000581185.5:ENST00000584354.1:ENST00000583786.5:ENST00000581089.1:ENST00000348811.6:ENST00000582208.1:ENST00000584114.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	92	2	2.08707	2.76006	3.43305	0.00262893	0.00159668	0.0471412	0.0364566
chr14	101968236	101968336	5820257	0	+	0.41	(0.408,0.44]	chr14	551975	29	INTRON	INTRON	DYNC1H1	ENSG00000197102.14	ENST00000360184.10:ENST00000684561.1:ENST00000680313.1:ENST00000679720.1:ENST00000680715.1:ENST00000681283.1:ENST00000681822.1:ENST00000679910.1:ENST00000681574.1:ENST00000645039.2:ENST00000645149.2:ENST00000680200.1:ENST00000680120.1:ENST00000644881.2:ENST00000681066.1:ENST00000680423.1:ENST00000681536.1:ENST00000679486.1:ENST00000681010.1:ENST00000679629.1:ENST00000681123.1:ENST00000680874.1:ENST00000680137.1:ENST00000643508.2:ENST00000680808.1:ENST00000681311.1:ENST00000681859.1:ENST00000643684.1:ENST00000643958.2:ENST00000680001.1:ENST00000681668.1:ENST00000645114.2:ENST00000681751.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	55	2	2.31565	2.7600100000000003	3.20437	0.0154718	0.00306596	0.100909	0.0509893
chr1	55064656	55064754	108741	0	+	0.5	(0.476,0.515]	chr1	14230	12	UTR3	UTR3:EXON_MRNA	PCSK9	ENSG00000169174.11	ENST00000302118.5:ENST00000673903.1:ENST00000490692.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	139	2	2.10246	2.760005	3.41755	0.00381269	2.80798e-5	0.0562562	0.00435887
chr20	47314477	47314577	7349088	0	-	0.4	(0.378,0.408]	chr20	749342	39	INTRON	INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000468376.2:ENST00000435836.5:ENST00000446894.5:ENST00000441977.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	127	2	1.97234	2.75985	3.54736	0.00589072	4.84094e-5	0.067031	0.00567485
chr19	11090308	11090404	7016820	0	+	0.75	(0.57,1]	chr19	697418	3	INTRON	INTRON	LDLR	ENSG00000130164.14	ENST00000557933.5:ENST00000558518.6:ENST00000545707.5:ENST00000535915.5:ENST00000455727.6:ENST00000557958.1:ENST00000560502.5:ENST00000558013.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	44	2	2.49001	2.7598399999999996	3.02967	0.00471306	8.49418e-4	0.0631419	0.0267232
chr8	123337424	123337524	4042022	0	-	0.39	(0.378,0.408]	chr8	368675	4	SS5_PROX	SS5_PROX:INTRON	ATAD2	ENSG00000156802.13	ENST00000287394.10:ENST00000517666.5:ENST00000521903.5:ENST00000519124.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	70	2	2.24048	2.759775	3.27907	0.00867536	0.0023379	0.0787771	0.0442989
chr10	42351239	42351339	4603286	0	-	0.3	(0.28,0.32]	chr10	424077	103	INTRON	INTRON	ENSG00000215146	ENSG00000215146.5	ENST00000609841.1:ENST00000650175.1:ENST00000423987.2:ENST00000609034.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	2	51	2	2.73945	2.759745	2.78004	0.0193244	0.017681	0.11319	0.108861
chr2	197955768	197955867	970614	0	+	0.262626	[0,0.28]	chr2	104858	1451	INTRON	INTRON	PLCL1	ENSG00000115896.16	ENST00000428675.6:ENST00000435320.1:ENST00000487695.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	80	2	2.15457	2.7597300000000002	3.36489	0.0269306	0.00388509	0.135288	0.0544269
chr1	16347164	16347264	382567	0	-	0.38	(0.378,0.408]	chr1	44888	314	INTRON	INTRON	FBXO42	ENSG00000037637.11	ENST00000375592.8	protein_coding	protein_coding	protein_coding	protein_coding	12	188	2	2.50576	2.75959	3.01342	3.05889e-4	8.72842e-5	0.0161362	0.00784585
chr2	151424251	151424349	893354	0	+	0.438776	(0.408,0.44]	chr2	98908	6	INTRON	INTRON	RIF1	ENSG00000080345.18	ENST00000453091.6:ENST00000428287.6:ENST00000444746.7:ENST00000243326.9:ENST00000414861.6:ENST00000430328.6	protein_coding	protein_coding	protein_coding	protein_coding	4	74	2	2.69457	2.75959	2.82461	0.00331036	0.00241819	0.0527031	0.0442901
chr7	128458716	128458816	3406881	0	+	0.42	(0.408,0.44]	chr7	318259	4	INTRON	INTRON	ENSG00000273184	ENSG00000273184.1	ENST00000462662.1	lncRNA	lncRNA	lncRNA	lncRNA	4	74	2	2.69457	2.75959	2.82461	0.00331036	0.00241819	0.0527031	0.0442901
chr11	57790033	57790127	4793415	0	+	0.351064	(0.35,0.378]	chr11	443728	5	INTRON	INTRON	ENSG00000288534:CTNND1	ENSG00000288534.1:ENSG00000198561.16	ENST00000673781.1:ENST00000673810.1:ENST00000674116.1:ENST00000674060.1:ENST00000524630.5:ENST00000529919.5:ENST00000533189.1:ENST00000682741.1:ENST00000358694.10:ENST00000361332.8:ENST00000361391.10:ENST00000361796.9:ENST00000415361.6:ENST00000426142.6:ENST00000428599.6:ENST00000525902.5:ENST00000526357.5:ENST00000526772.5:ENST00000527467.5:ENST00000528232.5:ENST00000528621.5:ENST00000529526.5:ENST00000529873.5:ENST00000529986.5:ENST00000530094.5:ENST00000530748.5:ENST00000531014.5:ENST00000532245.5:ENST00000532463.5:ENST00000532649.5:ENST00000532787.5:ENST00000532844.5:ENST00000533667.5:ENST00000534579.5:ENST00000399050.10:ENST00000526938.5:ENST00000531007.2:ENST00000674015.1:ENST00000673826.1:ENST00000673683.1:ENST00000674106.1:ENST00000530068.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	121	2	2.27669	2.7594399999999997	3.24219	0.00179366	4.4837e-4	0.0392772	0.0196044
chr12	91617219	91617319	5385389	0	-	0.41	(0.408,0.44]	chr12	513485	1100	INTRON	INTRON	ENSG00000289605	ENSG00000289605.1	ENST00000685093.1	lncRNA	lncRNA	lncRNA	lncRNA	4	66	2	1.92319	2.7594149999999997	3.59564	0.0247322	5.73354e-4	0.12011	0.0217398
chr12	76084280	76084373	5370222	0	-	0.655914	(0.57,1]	chr12	512333	3	SS5_PROX	SS5_PROX:INTRON	NAP1L1	ENSG00000187109.15	ENST00000618691.5:ENST00000393263.7:ENST00000431879.7:ENST00000547773.5:ENST00000544816.5:ENST00000542344.5:ENST00000535020.6:ENST00000549596.5:ENST00000552342.5:ENST00000548044.5:ENST00000550934.5:ENST00000548273.5:ENST00000551600.5:ENST00000547704.5:ENST00000549988.5:ENST00000547479.5:ENST00000549479.1:ENST00000551500.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	40	2	2.0955	2.759365	3.42323	0.00622614	8.58388e-4	0.0718276	0.0267428
chr10	26804338	26804438	4583933	0	-	0.39	(0.378,0.408]	chr10	422397	267	INTRON	INTRON	ABI1	ENSG00000136754.18	ENST00000376138.7:ENST00000376166.5:ENST00000376160.5:ENST00000376139.6:ENST00000376142.6:ENST00000359188.8:ENST00000376170.8:ENST00000536334.5:ENST00000490841.6:ENST00000376137.8:ENST00000376140.4:ENST00000346832.10:ENST00000473481.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	56	2	2.56408	2.759335	2.95459	0.00957623	0.00566993	0.0820838	0.0678837
chr11	77923267	77923367	4996493	0	-	0.38	(0.378,0.408]	chr11	472143	9	EXON_MRNA	EXON_MRNA:INTRON	INTS4	ENSG00000149262.18	ENST00000695303.1:ENST00000695096.1:ENST00000695097.1:ENST00000695099.1:ENST00000695100.1:ENST00000695101.1:ENST00000695102.1:ENST00000695098.1:ENST00000525931.2:ENST00000695310.1:ENST00000524766.6:ENST00000695306.1:ENST00000695307.1:ENST00000695308.1:ENST00000695309.1:ENST00000695305.1:ENST00000695304.1:ENST00000695103.1:ENST00000695316.1:ENST00000695315.1:ENST00000433818.6:ENST00000534064.6:ENST00000535943.2:ENST00000695104.1:ENST00000695332.1:ENST00000695317.1:ENST00000695319.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	56	2	2.56408	2.759335	2.95459	0.00957623	0.00566993	0.0820838	0.0678837
chr16	15596499	15596595	6451211	0	-	0.40625	(0.378,0.408]	chr16	621750	23	UTR3	UTR3:EXON_MRNA	MARF1	ENSG00000166783.22	ENST00000396368.8:ENST00000540441.6:ENST00000552771.5:ENST00000548025.5:ENST00000551742.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	56	2	2.56408	2.759335	2.95459	0.00957623	0.00566993	0.0820838	0.0678837
chr19	32657620	32657719	7169448	0	-	0.454545	(0.44,0.476]	chr19	724470	75	INTRON	INTRON	ANKRD27	ENSG00000105186.16	ENST00000306065.9:ENST00000587352.5:ENST00000586463.5:ENST00000588700.5:ENST00000586693.7:ENST00000590519.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	42	2	2.49112	2.759315	3.02751	0.0315968	0.00715968	0.144381	0.0723634
chr3	9802840	9802937	1361023	0	+	0.474227	(0.44,0.476]	chr3	143111	7	INTRON	INTRON	ARPC4:ARPC4-TTLL3	ENSG00000241553.13:ENSG00000250151.9	ENST00000498623.6:ENST00000424442.5:ENST00000418163.5:ENST00000397261.8:ENST00000417500.5:ENST00000440787.5:ENST00000467289.5:ENST00000485273.1:ENST00000397256.5:ENST00000433034.1:ENST00000453882.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	42	2	2.49112	2.759315	3.02751	0.0315968	0.00715968	0.144381	0.0723634
chr2	85320315	85320414	1168888	0	-	0.424242	(0.408,0.44]	chr2	124468	24	UTR3	UTR3:EXON_MRNA	TGOLN2	ENSG00000152291.15	ENST00000398263.6:ENST00000377386.8	protein_coding	protein_coding	protein_coding	protein_coding	9	146	2	2.46722	2.7593	3.05138	3.5594e-4	2.31493e-4	0.0168968	0.0139549
chr11	13688778	13688878	4742507	0	+	0.35	(0.32,0.35]	chr11	439155	188	INTRON	INTRON	FAR1	ENSG00000197601.13	ENST00000354817.8:ENST00000532701.1	protein_coding	protein_coding	protein_coding	protein_coding	3	64	2	2.38582	2.759295	3.13277	0.0138529	0.00458313	0.0953077	0.0622676
chr1	29036520	29036617	60187	0	+	0.360825	(0.35,0.378]	chr1	7697	2	INTRON	INTRON	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000647918.1:ENST00000646800.1:ENST00000644342.1:ENST00000646189.1:ENST00000482464.6:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000646260.1:ENST00000373798.5:ENST00000644600.1:ENST00000649674.1:ENST00000643173.1:ENST00000343067.9:ENST00000644780.1:ENST00000650265.1:ENST00000648181.1:ENST00000643604.1:ENST00000648891.1:ENST00000373797.2:ENST00000349460.9:ENST00000645184.1:ENST00000645111.1:ENST00000643302.1:ENST00000645999.1:ENST00000642643.1:ENST00000636666.1:ENST00000644848.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	61	2	2.60341	2.759285	2.91516	0.0275785	0.0013628	0.123904	0.0339121
chr13	32519193	32519292	5572652	0	-	0.444444	(0.44,0.476]	chr13	532556	8	INTRON	INTRON	N4BP2L2	ENSG00000244754.9	ENST00000357505.10:ENST00000399396.7:ENST00000504114.5:ENST00000509076.1:ENST00000446957.6:ENST00000674456.1:ENST00000674161.1:ENST00000674422.1:ENST00000674272.1:ENST00000674452.1:ENST00000674384.1:ENST00000505213.5:ENST00000674219.1:ENST00000267068.5:ENST00000674349.1:ENST00000674428.1:ENST00000503814.2:ENST00000674465.1:ENST00000674421.1:ENST00000674180.1:ENST00000674297.1:ENST00000674293.1:ENST00000674480.1:ENST00000674377.1:ENST00000674437.1:ENST00000674327.1:ENST00000674399.1:ENST00000674196.1:ENST00000674163.1:ENST00000511143.5:ENST00000674484.1:ENST00000475731.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	54	2	2.59888	2.7591900000000003	2.9195	0.0102021	0.00487719	0.0850389	0.0640618
chr7	75187974	75188074	3557287	0	-	0.41	(0.408,0.44]	chr7	331276	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	GTF2IP1	ENSG00000277053.4	ENST00000618412.4:ENST00000622829.4:ENST00000621948.4:ENST00000616377.4:ENST00000614592.4	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript:transcribed_unprocessed_pseudogene	4	69	2	2.7371	2.7591599999999996	2.78122	0.015812	7.83328e-4	0.101453	0.0257505
chr15	30651713	30651812	5992535	0	+	0.313131	(0.28,0.32]	chr15	569759	23	INTRON	INTRON	ENSG00000284906:ENSG00000285035	ENSG00000284906.3:ENSG00000285035.2	ENST00000685924.1:ENST00000563110.6:ENST00000642399.2:ENST00000566548.5	protein_coding	protein_coding	protein_coding:transcribed_unprocessed_pseudogene	protein_coding:nonsense_mediated_decay:processed_transcript:transcribed_unprocessed_pseudogene	8	155	2	2.35299	2.759045	3.1651	9.56713e-4	8.79973e-4	0.0284484	0.0272129
chr7	100348430	100348529	3364463	0	+	0.494949	(0.476,0.515]	chr7	314647	21	INTRON	INTRON	STAG3L5P:STAG3L5P-PVRIG2P-PILRB	ENSG00000242294.6:ENSG00000272752.6	ENST00000473757.5:ENST00000470714.5:ENST00000310771.8:ENST00000483329.6:ENST00000444874.5:ENST00000488972.6:ENST00000493499.1	lncRNA	retained_intron	lncRNA:transcribed_unprocessed_pseudogene	retained_intron:lncRNA:processed_transcript	7	120	2	2.51682	2.75894	3.00106	9.59562e-4	2.78737e-4	0.0284801	0.0153269
chr17	60600886	60600986	6644472	0	+	0.65	(0.57,1]	chr17	648910	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	PPM1D	ENSG00000170836.13	ENST00000305921.8:ENST00000693102.1:ENST00000685212.1:ENST00000693196.1:ENST00000392995.7:ENST00000685582.1:ENST00000688505.1:ENST00000629650.3:ENST00000687355.1:ENST00000686064.1:ENST00000689445.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	46	2	2.52633	2.7589	2.99147	0.0018535	6.75142e-4	0.039946	0.0237705
chr14	21214511	21214610	5834607	0	-	0.434343	(0.408,0.44]	chr14	554424	10	INTRON	INTRON	HNRNPC	ENSG00000092199.19	ENST00000336053.10:ENST00000553300.6:ENST00000554969.5:ENST00000556142.5:ENST00000554455.5:ENST00000430246.6:ENST00000553753.5:ENST00000555309.5:ENST00000555914.5:ENST00000557442.5:ENST00000556628.5:ENST00000556513.5:ENST00000555883.5:ENST00000557201.5:ENST00000556897.5:ENST00000420743.6:ENST00000557157.5:ENST00000554539.5:ENST00000554383.5:ENST00000554417.1:ENST00000555215.5:ENST00000555137.5:ENST00000554891.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	73	2	2.6117	2.75885	2.906	0.00555224	0.00131817	0.0648867	0.0333932
chr19	1640774	1640873	7112996	0	-	0.383838	(0.378,0.408]	chr19	714651	80	INTRON	INTRON	TCF3	ENSG00000071564.17	ENST00000344749.9:ENST00000611869.5:ENST00000262965.12:ENST00000588136.7:ENST00000453954.6:ENST00000395423.7:ENST00000587235.6:ENST00000586318.1	protein_coding	protein_coding	protein_coding	protein_coding	4	69	2	2.13797	2.7588350000000004	3.3797	0.0124882	0.00154501	0.0923444	0.0362716
chr22	38356498	38356598	7587411	0	-	0.39	(0.378,0.408]	chr22	776655	51	INTRON	INTRON	TPTEP2	ENSG00000244627.5	ENST00000428294.5:ENST00000407491.6:ENST00000443042.5:ENST00000457665.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	2	42	2	2.46373	2.7588299999999997	3.05393	0.0382831	0.00551532	0.141795	0.0672816
chr11	68480190	68480290	4817527	0	+	0.36	(0.35,0.378]	chr11	448907	190	INTRON	INTRON	PPP6R3	ENSG00000110075.15	ENST00000530427.5:ENST00000528635.5:ENST00000529907.5:ENST00000533127.5:ENST00000534534.5:ENST00000529344.5:ENST00000524845.5:ENST00000393800.7:ENST00000265637.8:ENST00000524904.5:ENST00000393801.7:ENST00000265636.9:ENST00000529710.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	64	2	2.39939	2.75881	3.11823	0.0458078	5.25625e-4	0.149888	0.0206013
chr5	81995277	81995377	2402935	0	+	0.49	(0.476,0.515]	chr5	232116	29	INTRON	INTRON	ATG10	ENSG00000152348.16	ENST00000282185.8:ENST00000355178.8:ENST00000458350.7:ENST00000513443.5:ENST00000504770.5:ENST00000513634.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	130	2	1.8073	2.758635	3.70997	0.00812117	1.75462e-5	0.0766625	0.00318885
chr1	173890006	173890106	256966	0	+	0.45	(0.44,0.476]	chr1	30716	40	UTR3	UTR3:EXON_MRNA	ZBTB37	ENSG00000185278.16	ENST00000367701.10	protein_coding	protein_coding	protein_coding	protein_coding	6	100	2	2.06341	2.75861	3.45381	0.00871005	7.90762e-5	0.0788605	0.00739361
chr12	54280946	54281022	5143370	0	+	0.539474	(0.515,0.57]	chr12	485528	2	UTR5	UTR5:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HNRNPA1	ENSG00000135486.19	ENST00000546500.5:ENST00000677385.1:ENST00000677210.1:ENST00000677375.1:ENST00000677249.1:ENST00000676725.1:ENST00000678418.1:ENST00000550482.2:ENST00000340913.11:ENST00000679101.1:ENST00000547566.5:ENST00000547708.5:ENST00000679228.1:ENST00000547870.2:ENST00000551702.5:ENST00000678365.1:ENST00000330752.12:ENST00000676794.1:ENST00000547276.5:ENST00000678919.1:ENST00000678690.1:ENST00000677220.1:ENST00000678077.1:ENST00000548688.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	30	430	2	2.52311	2.758565	2.99402	1.10851e-5	6.12086e-7	0.00245423	4.5502e-4
chr1	33025166	33025265	416740	0	-	0.313131	(0.28,0.32]	chr1	50351	2	INTRON	INTRON	AK2	ENSG00000004455.18	ENST00000373449.7:ENST00000672715.1:ENST00000695598.1:ENST00000550338.6:ENST00000695599.1:ENST00000354858.11:ENST00000695600.1:ENST00000695601.1:ENST00000491241.2:ENST00000695602.1:ENST00000469238.2:ENST00000695603.1:ENST00000695604.1:ENST00000672308.1:ENST00000548033.5:ENST00000467905.5:ENST00000480134.5:ENST00000695605.1:ENST00000673291.1:ENST00000487289.1:ENST00000548559.1:ENST00000551979.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	68	2	2.55521	2.75854	2.96187	0.0114995	0.0067419	0.0889104	0.0739405
chr4	1996692	1996791	2095927	0	-	0.474747	(0.44,0.476]	chr4	207403	42	INTRON	INTRON	NELFA	ENSG00000185049.16	ENST00000542778.5:ENST00000382882.9:ENST00000333877.8:ENST00000431323.6:ENST00000455762.5:ENST00000421397.5:ENST00000411649.3:ENST00000443203.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	137	2	2.69079	2.758535	2.82628	5.45672e-4	1.78564e-4	0.0215454	0.0116619
chr1	222572161	222572261	641689	0	-	0.38	(0.378,0.408]	chr1	75718	11	INTRON	INTRON	TAF1A	ENSG00000143498.18	ENST00000350027.8:ENST00000366890.5:ENST00000352967.9:ENST00000391883.2:ENST00000487009.5:ENST00000465263.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	42	2	2.72993	2.75849	2.78705	0.0188736	0.0135539	0.108861	0.101363
chr21	43722799	43722897	7413182	0	+	0.408163	(0.378,0.408]	chr21	755495	5	INTRON	INTRON	PDXK	ENSG00000160209.19	ENST00000398081.5:ENST00000468090.5:ENST00000291565.9:ENST00000398085.7:ENST00000476084.1:ENST00000470029.5:ENST00000438837.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	42	2	2.72993	2.75849	2.78705	0.0188736	0.0135539	0.108861	0.101363
chr20	35021456	35021556	7332184	0	-	0.55	(0.515,0.57]	chr20	746928	1	SS3_PROX	SS3_PROX:INTRON	TRPC4AP	ENSG00000100991.12	ENST00000252015.3:ENST00000451813.6	protein_coding	protein_coding	protein_coding	protein_coding	6	71	2	1.77888	2.7584850000000003	3.73809	0.0139834	3.11298e-4	0.10247	0.0162055
chr3	180974112	180974212	1569243	0	+	0.3	(0.28,0.32]	chr3	162449	24	INTRON	INTRON	FXR1	ENSG00000114416.18	ENST00000305586.11:ENST00000475315.5:ENST00000357559.9:ENST00000468861.5:ENST00000491062.5:ENST00000445140.6:ENST00000472339.5:ENST00000480918.5:ENST00000482125.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	68	2	2.4721	2.758475	3.04485	0.00906617	0.00894006	0.0854289	0.0799922
chr8	73971034	73971134	3972596	0	-	0.3	(0.28,0.32]	chr8	364300	4	SS3_PROX	SS3_PROX:INTRON	ELOC	ENSG00000154582.18	ENST00000602840.5:ENST00000518127.5:ENST00000520242.6:ENST00000687224.1:ENST00000622804.2:ENST00000685938.1:ENST00000520210.1:ENST00000284811.12:ENST00000519487.6:ENST00000522337.5:ENST00000523815.5:ENST00000519082.5	protein_coding	protein_coding	protein_coding	protein_coding	3	68	2	2.4721	2.758475	3.04485	0.00906617	0.00894006	0.0854289	0.0799922
chr2	113244992	113245091	853143	0	+	0.383838	(0.378,0.408]	chr2	95735	37	INTRON	INTRON	PAX8-AS1	ENSG00000189223.15	ENST00000556070.6:ENST00000623306.3:ENST00000451179.6:ENST00000653055.1:ENST00000665814.1:ENST00000669027.1:ENST00000617509.4:ENST00000616073.5:ENST00000422956.6:ENST00000661674.1:ENST00000617278.2:ENST00000654203.1:ENST00000663248.1:ENST00000333145.9:ENST00000665717.1:ENST00000624706.3:ENST00000445745.6:ENST00000436293.6:ENST00000661255.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	2	44	2	2.13703	2.7583650000000004	3.3797	0.0797592	0.00154501	0.19979	0.0362716
chr7	6375170	6375270	3273026	0	+	0.44	(0.408,0.44]	chr7	304304	4	SS5_PROX	SS5_PROX:INTRON	RAC1	ENSG00000136238.19	ENST00000348035.9:ENST00000356142.4:ENST00000696666.1:ENST00000488373.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	75	2	2.22819	2.758355	3.28852	0.00373083	0.00287185	0.0561984	0.0474836
chr8	30707879	30707971	3932546	0	-	0.565217	(0.515,0.57]	chr8	360252	4	SS5_PROX	SS5_PROX:INTRON	GSR	ENSG00000104687.14	ENST00000221130.11:ENST00000643653.1:ENST00000643525.1:ENST00000537535.5:ENST00000541648.5:ENST00000546342.5:ENST00000523295.5:ENST00000521479.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	64	2	2.16051	2.7583	3.35609	0.0046825	0.00174131	0.0631419	0.0375363
chr21	45492434	45492534	7420410	0	+	0.43	(0.408,0.44]	chr21	756521	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1:ENST00000355480.10:ENST00000359759.8:ENST00000342220.9	protein_coding	protein_coding	protein_coding	protein_coding	5	91	2	2.26617	2.75812	3.25007	0.00649402	3.61891e-4	0.0734343	0.0176126
chr1	6615964	6616061	5438	0	+	0.42268	(0.408,0.44]	chr1	1062	15	INTRON	INTRON	PHF13	ENSG00000116273.6	ENST00000377648.5:ENST00000495385.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	75	2	1.8865	2.75811	3.62972	0.0148842	7.19047e-4	0.107116	0.0246202
chr1	1317739	1317819	359492	0	-	0.375	(0.35,0.378]	chr1	41632	3	EXON_LNCRNA	EXON_LNCRNA:INTRON	INTS11:ENSG00000240731	ENSG00000127054.22:ENSG00000240731.1	ENST00000540437.5:ENST00000545578.5:ENST00000620829.4:ENST00000435064.6:ENST00000323275.10:ENST00000411962.5:ENST00000419704.5:ENST00000458452.7:ENST00000421495.6:ENST00000532772.5:ENST00000450926.6:ENST00000527098.5:ENST00000528879.5:ENST00000531377.5:ENST00000434694.6:ENST00000488042.6:ENST00000526797.5:ENST00000526332.5:ENST00000430786.5:ENST00000527719.5:ENST00000530031.5:ENST00000526113.1:ENST00000526904.5:ENST00000525603.1:ENST00000444968.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA	12	209	2	2.54529	2.757975	2.97066	1.65479e-4	1.08989e-4	0.0117835	0.00884632
chr4	67039	67139	1905427	0	+	0.34	(0.32,0.35]	chr4	191003	65	INTRON	INTRON	ZNF595	ENSG00000272602.6	ENST00000608255.2:ENST00000609518.5:ENST00000509152.3:ENST00000610261.6	protein_coding	protein_coding	protein_coding	protein_coding	8	156	2	2.5845	2.7579149999999997	2.93133	5.89873e-4	4.12988e-4	0.0225024	0.0181365
chr22	20725688	20725788	7558302	0	-	0.47	(0.44,0.476]	chr22	772994	38	INTRON	INTRON	PI4KA	ENSG00000241973.11	ENST00000255882.11:ENST00000477245.5:ENST00000466772.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	57	2	2.00609	2.757815	3.50954	0.0360127	0.00116647	0.152355	0.0312127
chr4	17821683	17821783	1927166	0	+	0.52	(0.515,0.57]	chr4	193739	32	INTRON	INTRON	NCAPG	ENSG00000109805.10	ENST00000251496.7:ENST00000514176.5:ENST00000509719.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	47	2	2.26012	2.7577949999999998	3.25547	0.0160033	0.00261721	0.109464	0.0455413
chr1	160220853	160220934	571178	0	-	0.45679	(0.44,0.476]	chr1	69114	3	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DCAF8	ENSG00000132716.19	ENST00000326837.6:ENST00000368073.7:ENST00000368074.6:ENST00000477163.1:ENST00000461888.5:ENST00000490368.5:ENST00000497354.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	186	2	2.26766	2.75778	3.2479	0.00145091	4.89401e-6	0.0343893	0.00150861
chr5	34184743	34184841	2599932	0	-	0.357143	(0.35,0.378]	chr5	247053	15	INTRON	INTRON	GUSBP18	ENSG00000215158.9	ENST00000514048.5:ENST00000507274.1:ENST00000508395.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	6	111	2	2.73164	2.757755	2.78387	0.00387645	2.56782e-4	0.0543578	0.0142707
chr16	53254705	53254803	6352749	0	+	0.367347	(0.35,0.378]	chr16	609794	1	SS5_PROX	SS5_PROX:INTRON	CHD9	ENSG00000177200.18	ENST00000447540.6:ENST00000566029.5:ENST00000615216.4:ENST00000564845.5:ENST00000398510.7:ENST00000565803.2:ENST00000219084.10	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	59	2	2.34278	2.7576099999999997	3.17244	0.0129593	0.00487788	0.0991015	0.0607461
chr6	10909061	10909159	2811972	0	+	0.27551	[0,0.28]	chr6	264590	10	INTRON	INTRON	SYCP2L	ENSG00000153157.13	ENST00000341041.8:ENST00000283141.11:ENST00000543878.5:ENST00000487561.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	78	2	2.33097	2.757275	3.18358	0.0158969	0.00694532	0.109464	0.0718189
chrX	77903739	77903833	7684991	0	+	0.255319	[0,0.28]	chrX	786822	6	INTRON	INTRON	COX7B	ENSG00000131174.7	ENST00000373335.4:ENST00000650309.2:ENST00000647835.1	protein_coding	protein_coding	protein_coding	protein_coding	5	107	2	2.0939	2.75725	3.4206	0.00875794	0.00322364	0.0846118	0.0507087
chr1	50738362	50738462	450032	0	-	0.46	(0.44,0.476]	chr1	54238	1	SS5_PROX	SS5_PROX:INTRON	FAF1	ENSG00000185104.21	ENST00000396153.7:ENST00000487898.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	131	2	1.88371	2.75718	3.63065	0.00600541	2.7933e-5	0.0674604	0.00417558
chr1	45520913	45521010	439738	0	-	0.402062	(0.378,0.408]	chr1	53271	15	INTRON	INTRON	PRDX1	ENSG00000117450.15	ENST00000676549.1:ENST00000424390.2:ENST00000447184.6:ENST00000262746.5:ENST00000319248.13:ENST00000372079.1	protein_coding	protein_coding	protein_coding	protein_coding	2	44	2	2.45932	2.75717	3.05502	0.0346754	0.00689519	0.148144	0.0717484
chr16	2516265	2516363	6278682	0	+	0.489796	(0.476,0.515]	chr16	600551	15	INTRON	INTRON	ATP6V0C	ENSG00000185883.12	ENST00000330398.9:ENST00000568562.1:ENST00000565223.1	protein_coding	protein_coding	protein_coding	protein_coding	8	138	2	2.64763	2.75717	2.86671	4.86633e-4	2.11053e-4	0.0199652	0.0132122
chr2	144494844	144494941	1241553	0	-	0.319588	(0.28,0.32]	chr2	131733	7	EXON_MRNA	EXON_MRNA:INTRON	ZEB2:ENSG00000279166	ENSG00000169554.23:ENSG00000279166.1	ENST00000636471.1:ENST00000627532.3:ENST00000638128.1:ENST00000637304.1:ENST00000636179.1:ENST00000419938.5:ENST00000409487.7:ENST00000636732.2:ENST00000636026.2:ENST00000675069.1:ENST00000689298.1:ENST00000539609.7:ENST00000558170.6:ENST00000303660.8:ENST00000427902.5:ENST00000637267.2:ENST00000392861.6:ENST00000431672.4:ENST00000409211.5:ENST00000465308.5:ENST00000434448.5:ENST00000472146.5:ENST00000461784.3:ENST00000476394.5:ENST00000637591.2:ENST00000479735.1:ENST00000453352.5:ENST00000435831.5:ENST00000444559.5:ENST00000630572.2:ENST00000484313.3:ENST00000623674.1	protein_coding	protein_coding	protein_coding:TEC	protein_coding:retained_intron:nonsense_mediated_decay:TEC:processed_transcript	6	128	2	2.21774	2.757155	3.29657	0.00649055	2.79563e-4	0.0699952	0.0148832
chr19	3430239	3430338	7000265	0	+	0.484848	(0.476,0.515]	chr19	694183	47	INTRON	INTRON	NFIC	ENSG00000141905.19	ENST00000641145.1:ENST00000589123.5:ENST00000395111.7:ENST00000586919.5:ENST00000341919.7:ENST00000443272.3:ENST00000590282.5	protein_coding	protein_coding	protein_coding	protein_coding	3	54	2	2.26789	2.757095	3.2463	0.0176567	0.00262374	0.105233	0.0470772
chr12	45726682	45726782	5314861	0	-	0.38	(0.378,0.408]	chr12	505540	88	EXON_LNCRNA	EXON_LNCRNA	ENSG00000273015	ENSG00000273015.2	ENST00000609803.2	lncRNA	lncRNA	lncRNA	lncRNA	10	144	2	1.99165	2.75704	3.52243	0.00222444	1.00701e-4	0.0435144	0.00905982
chr2	177213418	177213518	925921	0	+	0.49	(0.476,0.515]	chr2	101734	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	HNRNPA3	ENSG00000170144.21	ENST00000392524.6:ENST00000679159.1:ENST00000678111.1:ENST00000678421.1:ENST00000677863.1:ENST00000676681.1:ENST00000676629.1:ENST00000677337.1:ENST00000676488.1:ENST00000677043.1:ENST00000676874.1:ENST00000676762.1:ENST00000411529.6:ENST00000676736.1:ENST00000483137.2:ENST00000677508.1:ENST00000435711.5:ENST00000679328.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	122	2	2.37295	2.7569749999999997	3.141	0.00193884	1.33345e-4	0.0409025	0.0105204
chr2	61384431	61384530	1129683	0	-	0.474747	(0.44,0.476]	chr2	121474	7	INTRON	INTRON	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000453133.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	75	2	1.7965	2.756925	3.71735	0.0205549	4.72844e-4	0.122348	0.0201458
chr18	2580219	2580318	6864479	0	+	0.383838	(0.378,0.408]	chr18	679858	8	INTRON	INTRON	NDC80	ENSG00000080986.13	ENST00000261597.9:ENST00000576274.2	protein_coding	protein_coding	protein_coding	protein_coding	3	56	2	2.61188	2.7567500000000003	2.90162	0.0113157	0.0047055	0.0886121	0.0631419
chr8	106052181	106052281	4019801	0	-	0.38	(0.378,0.408]	chr8	367516	1241	INTRON	INTRON	ZFPM2-AS1	ENSG00000251003.9	ENST00000520433.5:ENST00000524045.6:ENST00000520594.5:ENST00000509144.2:ENST00000520078.5:ENST00000521622.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	3	56	2	2.61188	2.7567500000000003	2.90162	0.0113157	0.0047055	0.0886121	0.0631419
chr9	98809667	98809767	4173671	0	+	0.39	(0.378,0.408]	chr9	380354	12	INTRON	INTRON	GALNT12	ENSG00000119514.7	ENST00000375011.4:ENST00000610463.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	56	2	2.61188	2.7567500000000003	2.90162	0.0113157	0.0047055	0.0886121	0.0631419
chr5	98912575	98912675	2683910	0	-	0.53	(0.515,0.57]	chr5	253957	71	INTRON	INTRON	CHD1	ENSG00000153922.11	ENST00000614616.5:ENST00000284049.7	protein_coding	protein_coding	protein_coding	protein_coding	15	150	2	1.55059	2.75675	3.96291	0.00690285	3.83119e-6	0.0751467	0.00141338
chr1	28947953	28948053	59290	0	+	0.3	(0.28,0.32]	chr1	7621	328	INTRON	INTRON	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000647918.1:ENST00000646800.1:ENST00000644342.1:ENST00000646189.1:ENST00000482464.6:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000646260.1:ENST00000373798.5:ENST00000644600.1:ENST00000649674.1:ENST00000643173.1:ENST00000343067.9:ENST00000644780.1:ENST00000650265.1:ENST00000648181.1:ENST00000643604.1:ENST00000648891.1:ENST00000373797.2:ENST00000349460.9:ENST00000645184.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	93	2	2.36963	2.75673	3.14383	0.0157022	5.83228e-4	0.101453	0.0219397
chr1	173867139	173867236	587084	0	-	0.43299	(0.408,0.44]	chr1	70638	2	EXON_LNCRNA	EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GAS5	ENSG00000234741.9	ENST00000687189.1:ENST00000689238.1:ENST00000687549.1:ENST00000687435.1:ENST00000687987.1:ENST00000686995.1:ENST00000689958.1:ENST00000687063.1:ENST00000689895.1:ENST00000690228.1:ENST00000688573.1:ENST00000412059.6:ENST00000685107.1:ENST00000449289.6:ENST00000691213.1:ENST00000436285.6:ENST00000436656.6:ENST00000422008.6:ENST00000691137.1:ENST00000450589.6:ENST00000448718.6:ENST00000693348.1:ENST00000690349.1:ENST00000690761.1:ENST00000687022.1:ENST00000686878.1:ENST00000430245.5:ENST00000422183.6:ENST00000442067.6:ENST00000693450.1:ENST00000690448.1:ENST00000416952.6:ENST00000688895.1:ENST00000687710.1:ENST00000693030.1:ENST00000692671.1:ENST00000688557.1:ENST00000456812.7:ENST00000431268.5:ENST00000455838.6:ENST00000449589.6:ENST00000444470.6:ENST00000693469.1:ENST00000685758.1:ENST00000458220.2:ENST00000687409.1:ENST00000688952.1:ENST00000689860.1:ENST00000686918.1:ENST00000691056.1:ENST00000689469.1:ENST00000685039.1:ENST00000414075.6:ENST00000692994.1:ENST00000691982.1:ENST00000690172.1:ENST00000686460.1:ENST00000691712.1:ENST00000685159.1:ENST00000685008.1:ENST00000452197.5:ENST00000454068.5:ENST00000650796.1:ENST00000451607.5:ENST00000693521.1:ENST00000690941.1:ENST00000693459.1:ENST00000686231.1:ENST00000684949.1:ENST00000425771.6:ENST00000432536.5:ENST00000456293.5:ENST00000443799.5:ENST00000421068.5	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	4	78	2	2.39162	2.756665	3.12171	0.0105837	6.63666e-4	0.0911864	0.0234815
chr7	127711516	127711615	3403002	0	+	0.323232	(0.32,0.35]	chr7	318124	35	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8	protein_coding	protein_coding	protein_coding	protein_coding	4	40	2	1.45026	2.756625	4.06299	0.0622478	0.0559439	0.194723	0.165463
chr1	31330308	31330407	61499	0	+	0.383838	(0.378,0.408]	chr1	7841	108	INTRON	INTRON	ZCCHC17	ENSG00000121766.16	ENST00000618216.4:ENST00000546109.5:ENST00000616393.4:ENST00000616859.4:ENST00000615916.4:ENST00000479629.5:ENST00000373714.5:ENST00000344147.10:ENST00000627541.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	56	2	2.41037	2.7565549999999996	3.10274	0.0100185	0.00586642	0.0880217	0.0668095
chr7	155669010	155669108	3452139	0	+	0.346939	(0.32,0.35]	chr7	322648	34	INTRON	INTRON	RBM33	ENSG00000184863.11	ENST00000287912.7:ENST00000401878.8:ENST00000392759.7	protein_coding	protein_coding	protein_coding	protein_coding	3	64	2	2.68921	2.75653	2.82385	0.0230336	0.00217392	0.118056	0.043502
chr12	111898139	111898238	5229309	0	+	0.454545	(0.44,0.476]	chr12	495712	52	UTR3	UTR3:EXON_MRNA	MAPKAPK5	ENSG00000089022.14	ENST00000550735.7	protein_coding	protein_coding	protein_coding	protein_coding	3	58	2	1.93084	2.7565150000000003	3.58219	0.0443175	8.57842e-4	0.162302	0.0267428
chr17	51022063	51022163	6796020	0	-	0.49	(0.476,0.515]	chr17	670985	3	INTRON	INTRON	SPAG9	ENSG00000008294.22	ENST00000262013.12:ENST00000510283.5:ENST00000505279.5:ENST00000357122.8:ENST00000514613.5:ENST00000505173.5:ENST00000576492.1:ENST00000510855.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	65	2	1.97402	2.756485	3.53895	0.0206778	0.00075485700000000005	0.110999	0.0251966
chr2	8958496	8958569	1063115	0	-	0.369863	(0.35,0.378]	chr2	113378	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	MBOAT2	ENSG00000143797.12	ENST00000305997.8:ENST00000486484.5:ENST00000477073.5:ENST00000474341.5:ENST00000462696.1:ENST00000460786.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	96	2	2.13524	2.756425	3.37761	0.0130865	1.38324e-4	0.0934394	0.0101276
chrX	55022860	55022959	7823222	0	-	0.252525	[0,0.28]	chrX	798451	12	INTRON	INTRON	ALAS2	ENSG00000158578.21	ENST00000396198.7:ENST00000650242.1:ENST00000335854.8:ENST00000463868.5:ENST00000493869.2:ENST00000477869.6:ENST00000455688.2:ENST00000644983.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	194	2	1.91292	2.756425	3.59993	0.00941461	8.2971e-5	0.0817766	0.00766582
chr2	107743045	107743145	1205980	0	-	0.34	(0.32,0.35]	chr2	128532	254	INTRON	INTRON	LINC01885:ENSG00000286769	ENSG00000237880.2:ENSG00000286769.1	ENST00000654481.1:ENST00000669817.1	lncRNA	lncRNA	lncRNA	lncRNA	10	184	2	1.97263	2.756215	3.5398	0.00522217	1.09854e-5	0.0633615	0.00244426
chr5	57178398	57178498	2358099	0	+	0.49	(0.476,0.515]	chr5	227562	16	INTRON	INTRON	GPBP1	ENSG00000062194.16	ENST00000424459.7:ENST00000514387.6:ENST00000506184.7:ENST00000511209.5	protein_coding	protein_coding	protein_coding	protein_coding	5	83	2	2.43821	2.756215	3.07422	0.00506023	0.00177508	0.0646039	0.0378678
chr22	38387231	38387329	7587729	0	-	0.387755	(0.378,0.408]	chr22	776697	33	INTRON	INTRON	TPTEP2	ENSG00000244627.5	ENST00000428294.5:ENST00000407491.6:ENST00000443042.5:ENST00000457665.5:ENST00000381645.7:ENST00000443658.5:ENST00000455209.5:ENST00000454577.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	4	68	2	1.90812	2.756205	3.60429	0.0264295	5.71664e-4	0.122506	0.0217398
chr13	110905532	110905599	5650553	0	-	0.343284	(0.32,0.35]	chr13	538381	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ANKRD10	ENSG00000088448.14	ENST00000267339.6:ENST00000489973.6:ENST00000310847.8:ENST00000465753.1:ENST00000494859.5:ENST00000464579.1:ENST00000463156.1:ENST00000460846.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	14	264	2	2.61835	2.7561999999999998	2.89405	1.52482e-4	5.90137e-5	0.0112857	0.00630808
chr15	92977647	92977747	6104496	0	+	0.37	(0.35,0.378]	chr15	581524	1	SS3_PROX	SS3_PROX:INTRON	CHD2	ENSG00000173575.22	ENST00000626874.2:ENST00000394196.9:ENST00000635856.1:ENST00000637572.1:ENST00000636881.1:ENST00000628118.1:ENST00000625463.1:ENST00000636306.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	143	2	1.70461	2.756185	3.80776	0.0137666	1.13445e-5	0.0949306	0.00249255
chr15	83065953	83066052	6249429	0	-	0.444444	(0.44,0.476]	chr15	596417	91	INTRON	INTRON	BTBD1	ENSG00000064726.10	ENST00000261721.9:ENST00000379403.2	protein_coding	protein_coding	protein_coding	protein_coding	4	67	2	2.2543	2.756155	3.25801	0.00787184	0.00248185	0.076155	0.0460771
chr16	85598221	85598321	6415814	0	+	0.63	(0.57,1]	chr16	615470	415	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	11	96	2	2.71689	2.75614	2.79539	8.93125e-5	2.35168e-5	0.00794582	0.00396325
chr17	37347968	37348067	6762461	0	-	0.484848	(0.476,0.515]	chr17	664970	22	INTRON	INTRON	ACACA	ENSG00000278540.5	ENST00000616317.5:ENST00000614428.4:ENST00000613146.4:ENST00000615229.4:ENST00000621960.1:ENST00000617548.1:ENST00000616352.4:ENST00000614789.4:ENST00000612007.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:non_stop_decay:nonsense_mediated_decay	2	41	2	2.56868	2.75609	2.9435	0.0256676	0.00929849	0.133676	0.0817766
chr9	33987237	33987337	4245222	0	-	0.48	(0.476,0.515]	chr9	390456	4	SS3_PROX	SS3_PROX:INTRON	UBAP2	ENSG00000137073.24	ENST00000379238.7:ENST00000683659.1:ENST00000682239.1:ENST00000683140.1:ENST00000682209.1:ENST00000681980.1:ENST00000360802.6:ENST00000683252.1:ENST00000684158.1:ENST00000682914.1:ENST00000683717.1:ENST00000379239.9:ENST00000683084.1:ENST00000684754.1:ENST00000629575.2:ENST00000684298.1:ENST00000412543.6:ENST00000421278.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	41	2	2.56868	2.75609	2.9435	0.0256676	0.00929849	0.133676	0.0817766
chr9	128429536	128429630	4204791	0	+	0.478723	(0.476,0.515]	chr9	384380	1	INTRON	INTRON	CERCAM	ENSG00000167123.20	ENST00000372842.5:ENST00000372838.9:ENST00000463535.5:ENST00000487001.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	41	2	2.56868	2.75609	2.9435	0.0256676	0.00929849	0.133676	0.0817766
chr5	160117305	160117404	2759779	0	-	0.40404	(0.378,0.408]	chr5	260442	83	INTRON	INTRON	PWWP2A	ENSG00000170234.13	ENST00000456329.7:ENST00000523662.1:ENST00000307063.9:ENST00000520662.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	78	2	1.80483	2.7560599999999997	3.70729	0.0201276	5.5156e-4	0.121243	0.0216014
chr21	42846057	42846156	7467566	0	-	0.515152	(0.476,0.515]	chr21	760925	24	INTRON	INTRON	WDR4	ENSG00000160193.12	ENST00000330317.6	protein_coding	protein_coding	protein_coding	protein_coding	8	135	2	2.24352	2.756035	3.26855	0.0019689	6.60703e-5	0.0411469	0.0071649
chr21	10432071	10432170	7368315	0	+	0.575758	(0.57,1]	chr21	751975	168	INTRON	INTRON	BAGE2	ENSG00000187172.15	ENST00000474011.5:ENST00000470054.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	4	35	2	2.24434	2.7559699999999996	3.2676	0.00677343	0.00176203	0.074225	0.0376652
chr8	81711422	81711522	3979468	0	-	0.28	[0,0.28]	chr8	364623	22	INTRON	INTRON	ZFAND1	ENSG00000104231.11	ENST00000524305.5:ENST00000220669.10:ENST00000523096.5:ENST00000522520.5:ENST00000522032.1:ENST00000519464.5:ENST00000521895.5:ENST00000521287.5:ENST00000523431.5:ENST00000520635.5:ENST00000519523.5:ENST00000517588.5:ENST00000520604.5:ENST00000523361.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	58	2	2.33055	2.7559649999999998	3.18138	0.062338	0.00487606	0.175343	0.0640618
chr1	47357597	47357697	97812	0	+	0.53	(0.515,0.57]	chr1	13138	231	INTRON	INTRON	CMPK1	ENSG00000162368.14	ENST00000371873.10:ENST00000371871.8:ENST00000471289.2:ENST00000450808.2:ENST00000371870.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	47	2	2.08547	2.755955	3.42644	0.0289426	0.00106731	0.1274	0.0300133
chr3	152314334	152314434	1535442	0	+	0.41	(0.408,0.44]	chr3	159996	120	INTRON	INTRON	MBNL1	ENSG00000152601.18	ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000495875.6:ENST00000324210.10:ENST00000493459.5:ENST00000459747.1:ENST00000460591.5:ENST00000545754.5:ENST00000357472.7:ENST00000324196.9:ENST00000498502.5:ENST00000463374.5:ENST00000485910.5:ENST00000465907.6:ENST00000492948.5:ENST00000485509.5:ENST00000464596.5	protein_coding	protein_coding	protein_coding	protein_coding	36	496	2	2.1916	2.7559500000000003	3.3203	4.91801e-5	1.28094e-6	0.00573787	7.33955e-4
chr13	27109833	27109933	5565946	0	-	0.53	(0.515,0.57]	chr13	532026	35	INTRON	INTRON	USP12	ENSG00000152484.14	ENST00000282344.11	protein_coding	protein_coding	protein_coding	protein_coding	2	35	2	2.52504	2.7559050000000003	2.98677	0.029342	0.00632549	0.128055	0.0722266
chr2	53967347	53967447	1120542	0	-	0.55	(0.515,0.57]	chr2	120102	177	INTRON	INTRON	PSME4	ENSG00000068878.15	ENST00000404125.6:ENST00000389993.7:ENST00000481518.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	35	2	2.52504	2.7559050000000003	2.98677	0.029342	0.00632549	0.128055	0.0722266
chr3	60252828	60252928	1712142	0	-	0.53	(0.515,0.57]	chr3	176138	1721	INTRON	INTRON	FHIT	ENSG00000189283.10	ENST00000492590.6:ENST00000476844.5:ENST00000468189.5:ENST00000488467.5	protein_coding	protein_coding	protein_coding	protein_coding	2	35	2	2.52504	2.7559050000000003	2.98677	0.029342	0.00632549	0.128055	0.0722266
chr9	88453657	88453756	4152705	0	+	0.535354	(0.515,0.57]	chr9	378752	43	INTRON	INTRON	SPIN1	ENSG00000106723.17	ENST00000485804.5:ENST00000469017.6:ENST00000375859.4:ENST00000462844.5:ENST00000485565.6:ENST00000483785.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	35	2	2.52504	2.7559050000000003	2.98677	0.029342	0.00632549	0.128055	0.0722266
chr15	22570572	22570670	5975304	0	+	0.346939	(0.32,0.35]	chr15	568203	9	INTRON	INTRON	HERC2P2	ENSG00000276550.5	ENST00000613386.4:ENST00000619021.4	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	4	85	2	2.72473	2.7558949999999998	2.78706	0.00433316	0.00253645	0.0579683	0.0465056
chr6	157031764	157031863	3009712	0	+	0.363636	(0.35,0.378]	chr6	281137	10	INTRON	INTRON	ARID1B	ENSG00000049618.24	ENST00000346085.10:ENST00000636930.2:ENST00000647938.1:ENST00000350026.10:ENST00000674298.1:ENST00000674190.1:ENST00000414678.7:ENST00000319584.11:ENST00000452544.2:ENST00000637887.1:ENST00000635849.1:ENST00000637003.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	45	2	2.57049	2.7558	2.94111	0.0262669	0.0104563	0.133676	0.0855102
chr2	171019997	171020096	1262672	0	-	0.424242	(0.408,0.44]	chr2	133830	47	INTRON	INTRON	TLK1	ENSG00000198586.14	ENST00000431350.7:ENST00000360843.7:ENST00000359766.7:ENST00000521943.5:ENST00000434911.6:ENST00000409443.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	76	2	2.35743	2.755785	3.15414	0.00469847	0.00206746	0.0600108	0.0421756
chr8	19821444	19821544	3709589	0	+	0.55	(0.515,0.57]	chr8	344136	6	EXON_MRNA	EXON_MRNA:INTRON	INTS10	ENSG00000104613.12	ENST00000397977.8:ENST00000521758.5:ENST00000523869.1:ENST00000522081.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	63	2	2.38476	2.755745	3.12673	0.0110593	3.95089e-4	0.0873897	0.0178567
chr12	1721143	1721243	5064469	0	+	0.34	(0.32,0.35]	chr12	477866	178	INTRON	INTRON	ADIPOR2	ENSG00000006831.10	ENST00000537545.1:ENST00000357103.5:ENST00000540974.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	48	2	2.56618	2.75564	2.9451	0.0274185	0.011051	0.136498	0.0873897
chr5	131523018	131523118	2718043	0	-	0.34	(0.32,0.35]	chr5	255585	11	INTRON	INTRON	RAPGEF6	ENSG00000158987.22	ENST00000509018.6:ENST00000507093.5:ENST00000296859.10:ENST00000627212.2:ENST00000308008.10:ENST00000515170.5:ENST00000510071.5:ENST00000514179.5:ENST00000513227.5:ENST00000504575.5:ENST00000504039.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	48	2	2.56618	2.75564	2.9451	0.0274185	0.011051	0.136498	0.0873897
chr10	98218934	98219034	4506396	0	+	0.55	(0.515,0.57]	chr10	414882	72	INTRON	INTRON	R3HCC1L	ENSG00000166024.14	ENST00000370584.7:ENST00000298999.8:ENST00000370586.6:ENST00000612478.4:ENST00000314594.6:ENST00000613938.4	protein_coding	protein_coding	protein_coding	protein_coding	2	35	2	2.74772	2.75563	2.76354	0.0147344	0.0142192	0.103638	0.0983813
chr11	64110257	64110357	4964072	0	-	0.52	(0.515,0.57]	chr11	467267	946	INTRON	INTRON	MACROD1	ENSG00000133315.12	ENST00000255681.7:ENST00000675777.1:ENST00000543422.5:ENST00000545464.5:ENST00000542359.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	35	2	2.74772	2.75563	2.76354	0.0147344	0.0142192	0.103638	0.0983813
chr16	1855089	1855187	6430181	0	-	0.530612	(0.515,0.57]	chr16	618372	5	INTRON	INTRON	MEIOB	ENSG00000162039.17	ENST00000325962.9:ENST00000470044.5:ENST00000397344.7:ENST00000496541.6	protein_coding	protein_coding	protein_coding	protein_coding	2	35	2	2.74772	2.75563	2.76354	0.0147344	0.0142192	0.103638	0.0983813
chr19	54453842	54453929	7099382	0	+	0.54023	(0.515,0.57]	chr19	711993	2	SS5_PROX	SS5_PROX:INTRON	LENG8	ENSG00000167615.17	ENST00000616932.4:ENST00000439657.5:ENST00000326764.10:ENST00000376514.6:ENST00000610347.1	protein_coding	protein_coding	protein_coding	protein_coding	2	35	2	2.74772	2.75563	2.76354	0.0147344	0.0142192	0.103638	0.0983813
chr2	61393955	61394054	1129779	0	-	0.545455	(0.515,0.57]	chr2	121474	103	INTRON	INTRON	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000453133.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	35	2	2.74772	2.75563	2.76354	0.0147344	0.0142192	0.103638	0.0983813
chr4	2552248	2552347	1912672	0	+	0.555556	(0.515,0.57]	chr4	191976	147	INTRON	INTRON	RNF4:FAM193A	ENSG00000063978.16:ENSG00000125386.16	ENST00000508235.1:ENST00000637812.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	35	2	2.74772	2.75563	2.76354	0.0147344	0.0142192	0.103638	0.0983813
chr7	139078251	139078351	3656101	0	-	0.38	(0.378,0.408]	chr7	339428	3	SS5_PROX	SS5_PROX:INTRON	ZC3HAV1	ENSG00000105939.14	ENST00000242351.10:ENST00000464606.5:ENST00000680309.1:ENST00000471652.1:ENST00000460845.5	protein_coding	protein_coding	protein_coding	protein_coding	5	78	2	1.64169	2.7556000000000003	3.86951	0.0377255	1.55755e-4	0.14078	0.0106835
chr1	1221947	1222047	358875	0	-	0.37	(0.35,0.378]	chr1	41400	7	INTRON	INTRON	SDF4	ENSG00000078808.19	ENST00000660930.1:ENST00000465727.5:ENST00000263741.12:ENST00000360001.12:ENST00000403997.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	131	2	2.4337	2.755555	3.07741	0.00216531	1.44425e-4	0.0417866	0.010445
chr13	114235802	114235888	5550424	0	+	0.406977	(0.378,0.408]	chr13	530436	3	INTRON	INTRON	CDC16	ENSG00000130177.16	ENST00000360383.7:ENST00000628084.2:ENST00000356221.8:ENST00000650489.1:ENST00000375310.5:ENST00000494766.5:ENST00000252457.9:ENST00000375308.5:ENST00000252458.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	78	2	1.78703	2.7555	3.72397	0.0240043	3.23378e-4	0.119664	0.0159645
chr15	73590972	73591071	6220751	0	-	0.333333	(0.32,0.35]	chr15	593900	30	INTRON	INTRON	NPTN	ENSG00000156642.17	ENST00000351217.10:ENST00000345330.9:ENST00000565325.5:ENST00000562924.5:ENST00000563691.5:ENST00000565282.5:ENST00000564551.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	47	2	2.37794	2.7553549999999998	3.13277	0.0498601	0.00458313	0.156383	0.0622676
chr6	15327123	15327223	2823758	0	+	0.33	(0.32,0.35]	chr6	265192	122	INTRON	INTRON	JARID2	ENSG00000008083.14	ENST00000341776.7:ENST00000397311.4	protein_coding	protein_coding	protein_coding	protein_coding	2	47	2	2.37794	2.7553549999999998	3.13277	0.0498601	0.00458313	0.156383	0.0622676
chr20	38429967	38430049	7342257	0	-	0.536585	(0.515,0.57]	chr20	748317	3	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	SNHG17	ENSG00000196756.14	ENST00000654008.2:ENST00000658076.1:ENST00000662982.2:ENST00000456953.7:ENST00000654183.2:ENST00000663540.2:ENST00000651115.2:ENST00000660885.2:ENST00000662213.1:ENST00000665233.2:ENST00000666268.2:ENST00000665735.1:ENST00000660558.2:ENST00000691280.1:ENST00000658488.2:ENST00000688336.1:ENST00000668054.2:ENST00000690441.1:ENST00000655520.2:ENST00000687490.1:ENST00000664626.1:ENST00000658051.1:ENST00000668042.1:ENST00000686971.1:ENST00000663187.1:ENST00000657868.1:ENST00000663534.1:ENST00000658141.1:ENST00000689917.1:ENST00000664073.2:ENST00000653697.1:ENST00000656320.1:ENST00000686814.1:ENST00000417578.7:ENST00000654853.1:ENST00000665440.1:ENST00000436764.7:ENST00000668482.2:ENST00000671249.1:ENST00000655692.1:ENST00000662568.1:ENST00000693250.1:ENST00000691368.1:ENST00000693227.1:ENST00000690361.1:ENST00000670051.1:ENST00000667912.1:ENST00000693665.1:ENST00000665181.1:ENST00000687532.1:ENST00000691386.1:ENST00000693684.1:ENST00000666331.1:ENST00000669480.1:ENST00000658905.1:ENST00000661252.1:ENST00000669137.1:ENST00000688133.1:ENST00000689414.1:ENST00000691314.1:ENST00000669033.1:ENST00000686145.1:ENST00000653938.1:ENST00000663784.1:ENST00000665003.1:ENST00000659400.1:ENST00000653753.1:ENST00000656023.1:ENST00000692262.1:ENST00000414142.5:ENST00000670958.1:ENST00000657216.2:ENST00000664636.1:ENST00000657843.1:ENST00000423536.6:ENST00000666419.1:ENST00000413755.5	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	5	76	2	2.31902	2.755315	3.19161	0.00493032	3.49295e-4	0.0646039	0.017404
chr1	226300377	226300475	647769	0	-	0.489796	(0.476,0.515]	chr1	76746	22	INTRON	INTRON	LIN9	ENSG00000183814.16	ENST00000460719.5:ENST00000366808.6:ENST00000328205.9:ENST00000681046.1:ENST00000481685.1:ENST00000359525.2	protein_coding	protein_coding	protein_coding	protein_coding	2	40	2	2.63168	2.755235	2.87879	0.0237106	0.00999149	0.118716	0.0879541
chr14	74296647	74296746	5922113	0	-	0.515152	(0.476,0.515]	chr14	562622	3	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	ABCD4	ENSG00000119688.21	ENST00000356924.9:ENST00000481935.5:ENST00000553486.5:ENST00000553745.5:ENST00000557554.5:ENST00000469672.5:ENST00000556119.5:ENST00000460308.6:ENST00000555617.5:ENST00000554453.5:ENST00000557588.5:ENST00000556971.1:ENST00000489678.1:ENST00000475240.5:ENST00000470637.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	40	2	2.63168	2.755235	2.87879	0.0237106	0.00999149	0.118716	0.0879541
chr14	74900718	74900795	5789977	0	+	0.480519	(0.476,0.515]	chr14	548619	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DLST	ENSG00000119689.15	ENST00000554612.5:ENST00000334220.9:ENST00000238671.11:ENST00000555089.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	40	2	2.63168	2.755235	2.87879	0.0237106	0.00999149	0.118716	0.0879541
chr3	182973013	182973112	1879859	0	-	0.515152	(0.476,0.515]	chr3	187821	69	INTRON	INTRON	DCUN1D1	ENSG00000043093.15	ENST00000292782.9:ENST00000632685.1:ENST00000460412.6:ENST00000469954.5:ENST00000492563.1:ENST00000497606.5:ENST00000487822.5:ENST00000466812.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	40	2	2.63168	2.755235	2.87879	0.0237106	0.00999149	0.118716	0.0879541
chr9	94424210	94424310	4162661	0	+	0.49	(0.476,0.515]	chr9	379491	86	INTRON	INTRON	MFSD14B	ENSG00000148110.17	ENST00000375344.8	protein_coding	protein_coding	protein_coding	protein_coding	2	40	2	2.63168	2.755235	2.87879	0.0237106	0.00999149	0.118716	0.0879541
chr13	97228531	97228631	5518460	0	+	0.5	(0.476,0.515]	chr13	527710	56	INTRON	INTRON	MBNL2	ENSG00000139793.20	ENST00000397601.5:ENST00000343600.9:ENST00000376673.8:ENST00000679496.1:ENST00000685165.1:ENST00000345429.10:ENST00000469707.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	55	2	2.69967	2.7552149999999997	2.81076	0.0195838	0.00203568	0.109483	0.0417667
chr3	195693595	195693695	1593806	0	+	0.48	(0.476,0.515]	chr3	165096	1	SS5_PROX	SS5_PROX:INTRON	MUC20-OT1	ENSG00000242086.8	ENST00000600527.5:ENST00000451982.6:ENST00000414625.6:ENST00000628917.2:ENST00000625358.2:ENST00000602127.5:ENST00000627502.2:ENST00000597034.5:ENST00000629823.2:ENST00000630243.2:ENST00000627718.2:ENST00000631366.2:ENST00000630170.2:ENST00000626569.2:ENST00000631189.2:ENST00000599448.5:ENST00000597482.5:ENST00000598992.5:ENST00000629990.1:ENST00000615493.4:ENST00000420851.6:ENST00000626870.2:ENST00000630417.2:ENST00000627152.2:ENST00000594715.5:ENST00000431767.5:ENST00000630863.2:ENST00000629686.2:ENST00000627562.2:ENST00000628547.2:ENST00000627363.2:ENST00000631105.2:ENST00000628823.2:ENST00000625776.2:ENST00000451228.5:ENST00000451216.6:ENST00000626617.2:ENST00000628301.2:ENST00000626677.1:ENST00000626178.2	lncRNA	lncRNA	lncRNA	lncRNA	5	87	2	2.21025	2.755115	3.29998	0.00913757	1.88247e-4	0.0812335	0.011951
chr6	119281994	119282094	3205136	0	-	0.49	(0.476,0.515]	chr6	298310	124	INTRON	INTRON	MAN1A1	ENSG00000111885.7	ENST00000368468.4	protein_coding	protein_coding	protein_coding	protein_coding	5	87	2	2.50488	2.754975	3.00507	0.00285353	8.38796e-4	0.0474836	0.0263691
chr2	202287459	202287559	985138	0	+	0.32	(0.28,0.32]	chr2	105737	4	SS3_PROX	SS3_PROX:INTRON	NOP58	ENSG00000055044.11	ENST00000264279.10:ENST00000492688.5:ENST00000478941.1:ENST00000433543.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	69	2	2.73077	2.75497	2.77917	0.0220748	0.00285651	0.115395	0.0494641
chr20	63711959	63712059	7300344	0	+	0.3	(0.28,0.32]	chr20	743023	24	INTRON	INTRON	ZGPAT	ENSG00000197114.12	ENST00000448100.6:ENST00000355969.11:ENST00000477340.5:ENST00000357119.8:ENST00000369967.7:ENST00000328969.5:ENST00000472711.5:ENST00000478385.5:ENST00000468235.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	69	2	2.73077	2.75497	2.77917	0.0220748	0.00285651	0.115395	0.0494641
chr1	162577577	162577673	238480	0	+	0.510417	(0.476,0.515]	chr1	28710	2	INTRON	INTRON	UAP1	ENSG00000117143.14	ENST00000367925.6:ENST00000367926.9	protein_coding	protein_coding	protein_coding	protein_coding	4	71	2	2.56291	2.754915	2.94692	0.00794331	0.00222582	0.0797304	0.0421176
chr20	38085846	38085946	7269408	0	+	0.51	(0.476,0.515]	chr20	738724	2	SS5_PROX	SS5_PROX:INTRON	RPRD1B	ENSG00000101413.12	ENST00000462548.6:ENST00000373433.9:ENST00000449186.2:ENST00000618318.1:ENST00000614670.1:ENST00000471511.1:ENST00000484683.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	72	2	2.54157	2.754905	2.96824	0.00697457	9.98194e-4	0.0718189	0.0290732
chr15	27195965	27196065	5984403	0	+	0.4	(0.378,0.408]	chr15	569164	1688	INTRON	INTRON	GABRG3	ENSG00000182256.13	ENST00000615808.5:ENST00000555083.5	protein_coding	protein_coding	protein_coding	protein_coding	3	58	2	2.11103	2.754875	3.39872	0.0266911	0.0019852	0.134419	0.0404516
chr11	34064957	34065056	4767784	0	+	0.515152	(0.476,0.515]	chr11	440959	12	INTRON	INTRON	CAPRIN1	ENSG00000135387.21	ENST00000341394.9:ENST00000528856.5:ENST00000389645.7:ENST00000534042.5:ENST00000534825.5:ENST00000532820.5:ENST00000530820.5:ENST00000529307.1:ENST00000526494.5:ENST00000532755.5:ENST00000533641.5:ENST00000530008.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	66	2	2.21025	2.7548199999999996	3.29939	0.00913757	0.00211868	0.0812335	0.0425644
chr16	29501173	29501273	6470573	0	-	0.56	(0.515,0.57]	chr16	625137	5	INTRON	INTRON	ENSG00000288632:NPIPB12	ENSG00000288632.1:ENSG00000169203.17	ENST00000675579.1:ENST00000550665.5:ENST00000551448.5:ENST00000547235.5:ENST00000550690.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:nonsense_mediated_decay:lncRNA	8	103	2	2.06367	2.754795	3.44592	0.00266204	8.97344e-5	0.0476185	0.00844245
chr1	32115431	32115531	63527	0	+	0.48	(0.476,0.515]	chr1	8071	69	INTRON	INTRON	KPNA6	ENSG00000025800.14	ENST00000373625.8:ENST00000471599.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	132	2	2.46713	2.75479	3.04245	6.29989e-4	2.24944e-4	0.0226424	0.013767
chr1	174877291	174877391	264326	0	+	0.46	(0.44,0.476]	chr1	30904	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	RABGAP1L	ENSG00000152061.24	ENST00000251507.8:ENST00000681986.1:ENST00000529145.6:ENST00000325589.9:ENST00000469553.6:ENST00000367687.5:ENST00000347255.6:ENST00000489615.5:ENST00000478442.5:ENST00000465412.5:ENST00000486220.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	87	2	2.28847	2.7547249999999996	3.22098	0.00692113	2.82213e-4	0.0718189	0.0149966
chr14	34866013	34866112	5868351	0	-	0.50505	(0.476,0.515]	chr14	557415	33	INTRON	INTRON	BAZ1A	ENSG00000198604.11	ENST00000358716.8:ENST00000360310.6:ENST00000382422.6	protein_coding	protein_coding	protein_coding	protein_coding	5	89	2	2.69854	2.75465	2.81076	0.00203568	0.00121528	0.0417667	0.031919
chr6	43556464	43556560	3097131	0	-	0.354167	(0.35,0.378]	chr6	290064	1	INTRON	INTRON	XPO5	ENSG00000124571.18	ENST00000265351.12:ENST00000496341.6:ENST00000424378.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	90	2	1.74831	2.754635	3.76096	0.0169142	4.8203e-4	0.110899	0.0203411
chr12	106960280	106960379	5218552	0	+	0.464646	(0.44,0.476]	chr12	493944	5	INTRON	INTRON	TMEM263	ENSG00000151135.10	ENST00000548125.5:ENST00000547242.5:ENST00000551489.5:ENST00000550344.5:ENST00000280756.9:ENST00000547081.1	protein_coding	protein_coding	protein_coding	protein_coding	3	54	2	2.64669	2.7545	2.86231	0.012214	0.0040295	0.0910127	0.0578376
chr16	21471453	21471553	6461059	0	-	0.42	(0.408,0.44]	chr16	623322	4	SS5_PROX	SS5_PROX:INTRON	SMG1P3	ENSG00000180747.15	ENST00000522480.5:ENST00000522841.6	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	3	55	2	2.36185	2.754455	3.14706	0.0133164	0.00382411	0.094512	0.0562562
chr3	43676220	43676320	1675994	0	-	0.43	(0.408,0.44]	chr3	171074	228	INTRON	INTRON	ANO10	ENSG00000160746.13	ENST00000413397.5:ENST00000439141.5:ENST00000428831.1:ENST00000436073.1:ENST00000495772.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	55	2	2.36185	2.754455	3.14706	0.0133164	0.00382411	0.094512	0.0562562
chr20	38930609	38930709	7272465	0	+	0.48	(0.476,0.515]	chr20	739054	33	INTRON	INTRON	FAM83D	ENSG00000101447.15	ENST00000619304.4:ENST00000619850.2	protein_coding	protein_coding	protein_coding	protein_coding	6	113	2	2.29359	2.754425	3.21526	0.00584957	8.89035e-5	0.0689807	0.00843627
chr10	117324152	117324252	4702193	0	-	0.43	(0.408,0.44]	chr10	433746	48	INTRON	INTRON	PDZD8	ENSG00000165650.12	ENST00000334464.7:ENST00000489491.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	65	2	2.30838	2.75436	3.20034	0.00547703	0.00398025	0.0671198	0.0549214
chr17	16432400	16432500	6562588	0	+	0.5	(0.476,0.515]	chr17	637893	1	SS5_PROX	SS5_PROX:INTRON	TRPV2	ENSG00000187688.15	ENST00000338560.12:ENST00000577277.6:ENST00000581560.5:ENST00000580788.6:ENST00000577865.2	protein_coding	protein_coding	protein_coding	protein_coding	3	54	2	2.31726	2.754225	3.19119	0.015077	0.00325748	0.0994339	0.0524329
chr6	12029270	12029369	2814396	0	+	0.474747	(0.44,0.476]	chr6	264794	85	INTRON	INTRON	HIVEP1	ENSG00000095951.17	ENST00000491710.5:ENST00000487103.5:ENST00000379388.7:ENST00000627968.2:ENST00000541134.5:ENST00000442081.6:ENST00000478545.1:ENST00000484210.1	protein_coding	protein_coding	protein_coding	protein_coding	3	54	2	2.33272	2.75422	3.17572	0.0129984	0.00427037	0.0991656	0.0573912
chr11	66366963	66367013	4968294	0	-	0.5	(0.476,0.515]	chr11	468512	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SLC29A2	ENSG00000174669.12	ENST00000311161.11:ENST00000357440.7:ENST00000544554.5:ENST00000540386.5:ENST00000619145.4:ENST00000546034.1:ENST00000541567.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	100	2	1.23367	2.75418	4.27469	0.0587374	2.76255e-5	0.189982	0.0043098
chr16	88644821	88644907	6539120	0	-	0.313953	(0.28,0.32]	chr16	633666	1	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	CYBA	ENSG00000051523.12	ENST00000696156.1:ENST00000696159.1:ENST00000696160.1:ENST00000696157.1:ENST00000696158.1:ENST00000261623.8:ENST00000696163.1:ENST00000696162.1:ENST00000696161.1:ENST00000565588.6:ENST00000566534.5:ENST00000566229.1:ENST00000567174.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	165	2	2.33779	2.754115	3.17044	0.00174815	5.14622e-4	0.0376192	0.0203753
chr10	927830	927930	4542549	0	-	0.3	(0.28,0.32]	chr10	419310	30	INTRON	INTRON	LARP4B	ENSG00000107929.16	ENST00000316157.8:ENST00000690516.1:ENST00000476529.5:ENST00000406525.6:ENST00000481118.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	84	2	1.90249	2.754085	3.60568	0.0261803	0.00127168	0.133676	0.032635
chr1	1777389	1777489	361726	0	-	0.37	(0.35,0.378]	chr1	42219	116	INTRON	INTRON	NADK	ENSG00000008130.15	ENST00000378625.5:ENST00000341991.7:ENST00000341426.9:ENST00000492845.6:ENST00000492768.5:ENST00000460602.5:ENST00000464373.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	44	2	2.39939	2.75401	3.10863	0.0458078	0.00470896	0.149888	0.0631419
chr1	8651672	8651772	372120	0	-	0.36	(0.35,0.378]	chr1	43533	269	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000400907.6:ENST00000656437.1:ENST00000659924.1:ENST00000480342.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	44	2	2.39939	2.75401	3.10863	0.0458078	0.00470896	0.149888	0.0631419
chr19	29974998	29975097	7047883	0	+	0.373737	(0.35,0.378]	chr19	702669	34	INTRON	INTRON	URI1	ENSG00000105176.18	ENST00000360605.8:ENST00000570564.5:ENST00000574233.5:ENST00000392271.6:ENST00000574110.5:ENST00000574666.5:ENST00000576442.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	44	2	2.39939	2.75401	3.10863	0.0458078	0.00470896	0.149888	0.0631419
chr3	185785377	185785477	1885952	0	-	0.32	(0.28,0.32]	chr3	188573	867	INTRON	INTRON	IGF2BP2	ENSG00000073792.16	ENST00000382199.7:ENST00000346192.7:ENST00000457616.6:ENST00000421047.3:ENST00000461957.5:ENST00000493302.5:ENST00000466476.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	82	2	2.1076	2.7540050000000003	3.40041	0.0133585	0.00273088	0.100772	0.0467642
chr1	8772920	8773020	373337	0	-	0.48	(0.476,0.515]	chr1	43549	192	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000656437.1:ENST00000659924.1	protein_coding	protein_coding	protein_coding	protein_coding	5	76	2	2.06011	2.7539749999999996	3.44784	0.00869033	0.00113238	0.0788605	0.0308465
chr2	68221326	68221426	1146212	0	-	0.44	(0.408,0.44]	chr2	122396	38	INTRON	INTRON	PPP3R1	ENSG00000221823.11	ENST00000234310.8:ENST00000409752.5:ENST00000409377.1	protein_coding	protein_coding	protein_coding	protein_coding	4	66	2	1.9831	2.753905	3.52471	0.018491	0.00112428	0.116694	0.0306963
chr2	85320215	85320315	1168887	0	-	0.43	(0.408,0.44]	chr2	124468	23	UTR3	UTR3:EXON_MRNA	TGOLN2	ENSG00000152291.15	ENST00000398263.6:ENST00000377386.8	protein_coding	protein_coding	protein_coding	protein_coding	4	66	2	1.9831	2.753905	3.52471	0.018491	0.00112428	0.116694	0.0306963
chr6	4921910	4922009	2792320	0	+	0.424242	(0.408,0.44]	chr6	263614	292	INTRON	INTRON	CDYL	ENSG00000153046.18	ENST00000328908.9:ENST00000440139.5:ENST00000397588.8:ENST00000472453.5:ENST00000449732.6:ENST00000343762.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	66	2	1.9831	2.753905	3.52471	0.018491	0.00112428	0.116694	0.0306963
chr4	25388982	25389082	1934081	0	+	0.42	(0.408,0.44]	chr4	194206	1	SS5_PROX	SS5_PROX:INTRON	ANAPC4	ENSG00000053900.11	ENST00000315368.8:ENST00000510092.5:ENST00000505080.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	41	2	2.36073	2.753895	3.14706	0.0481658	0.00382411	0.153019	0.0562562
chr9	5010281	5010381	4096073	0	+	0.43	(0.408,0.44]	chr9	373235	239	INTRON	INTRON	JAK2	ENSG00000096968.14	ENST00000636127.1:ENST00000476574.5:ENST00000381652.4	protein_coding	protein_coding	protein_coding	protein_coding	2	41	2	2.36073	2.753895	3.14706	0.0481658	0.00382411	0.153019	0.0562562
chr15	52052935	52053035	6029362	0	+	0.38	(0.378,0.408]	chr15	574447	24	INTRON	INTRON	MAPK6	ENSG00000069956.14	ENST00000691380.1:ENST00000681888.1:ENST00000261845.7:ENST00000680066.1:ENST00000680777.1:ENST00000680652.1	protein_coding	protein_coding	protein_coding	protein_coding	4	68	2	1.82258	2.753875	3.68517	0.0341279	3.90172e-4	0.135102	0.0177751
chr10	35434520	35434620	4425486	0	+	0.29	(0.28,0.32]	chr10	407911	3	SS5_PROX	SS5_PROX:INTRON	CCNY	ENSG00000108100.18	ENST00000374706.5:ENST00000490012.6:ENST00000493157.6:ENST00000374704.8:ENST00000265375.13:ENST00000339497.7:ENST00000492478.5:ENST00000470025.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	68	2	2.63379	2.753805	2.87382	0.014868	0.00503861	0.0989021	0.0646039
chr15	78897944	78898041	6069811	0	+	0.298969	(0.28,0.32]	chr15	578256	10	UTR3	UTR3:EXON_MRNA	MORF4L1	ENSG00000185787.15	ENST00000331268.9:ENST00000426013.7	protein_coding	protein_coding	protein_coding	protein_coding	3	68	2	2.63379	2.753805	2.87382	0.014868	0.00503861	0.0989021	0.0646039
chr1	19244738	19244817	387167	0	-	0.341772	(0.32,0.35]	chr1	46252	1	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	EMC1	ENSG00000127463.16	ENST00000477853.6:ENST00000688219.1:ENST00000690732.1:ENST00000690451.1:ENST00000688667.1:ENST00000685099.1:ENST00000685594.1:ENST00000690823.1:ENST00000692207.1:ENST00000688332.1:ENST00000375199.7:ENST00000375208.7:ENST00000486405.2:ENST00000688538.1:ENST00000488681.2:ENST00000475079.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	63	2	2.71053	2.7538	2.79707	0.0170923	0.00346747	0.104099	0.0539802
chr6	134995420	134995515	3224866	0	-	0.347368	(0.32,0.35]	chr6	299818	12	INTRON	INTRON	HBS1L	ENSG00000112339.15	ENST00000367837.10:ENST00000527578.5:ENST00000415177.6:ENST00000367826.6:ENST00000533274.5:ENST00000526100.5:ENST00000529641.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	80	2	2.74415	2.753775	2.7634	0.0198267	8.19858e-4	0.109608	0.026165
chr8	41734668	41734768	3938429	0	-	0.46	(0.44,0.476]	chr8	361117	2	INTRON	INTRON	ANK1	ENSG00000029534.21	ENST00000347528.8:ENST00000265709.13:ENST00000289734.13	protein_coding	protein_coding	protein_coding	protein_coding	5	76	2	2.00165	2.7537450000000003	3.50584	0.0109867	8.66138e-4	0.0873897	0.0266729
chr3	45744522	45744621	1417626	0	+	0.414141	(0.408,0.44]	chr3	148771	9	UTR3	UTR3:EXON_MRNA	SACM1L	ENSG00000211456.13	ENST00000455997.5:ENST00000672477.1:ENST00000389061.10:ENST00000464102.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	91	2	1.57433	2.75371	3.93309	0.0229059	1.78185e-4	0.12581	0.0121697
chr9	97509581	97509681	4171667	0	+	0.54	(0.515,0.57]	chr9	380069	74	INTRON	INTRON	TMOD1	ENSG00000136842.14	ENST00000395211.6:ENST00000259365.9	protein_coding	protein_coding	protein_coding	protein_coding	4	62	2	2.58624	2.753695	2.92115	0.00526399	0.00110258	0.0633874	0.03038
chr11	78355937	78356037	4999768	0	-	0.48	(0.476,0.515]	chr11	472466	142	INTRON	INTRON	GAB2	ENSG00000033327.13	ENST00000361507.5:ENST00000526030.1:ENST00000528886.5:ENST00000530915.1:ENST00000534823.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	40	2	2.56033	2.753625	2.94692	0.0287634	0.00794331	0.127066	0.0797304
chr17	2302246	2302344	6704720	0	-	0.612245	(0.57,1]	chr17	656377	12	INTRON	INTRON	SMG6	ENSG00000070366.14	ENST00000263073.11	protein_coding	protein_coding	protein_coding	protein_coding	4	36	2	1.74185	2.753605	3.76536	0.0401765	1.35835e-4	0.143911	0.0100405
chr10	68756342	68756412	4442633	0	+	0.528571	(0.515,0.57]	chr10	409661	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	CCAR1	ENSG00000060339.14	ENST00000630771.2:ENST00000543719.5:ENST00000541012.5:ENST00000265872.11:ENST00000539539.5:ENST00000543229.5:ENST00000536012.5:ENST00000543225.5:ENST00000540210.5:ENST00000483264.1:ENST00000479143.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	14	197	2	2.27098	2.75355	3.23612	5.14908e-4	1.51334e-6	0.0208667	7.37246e-4
chr7	87892315	87892414	3346838	0	+	0.363636	(0.35,0.378]	chr7	311868	39	INTRON	INTRON	DBF4	ENSG00000006634.8	ENST00000413643.5:ENST00000265728.6:ENST00000431138.5:ENST00000430279.5:ENST00000498144.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	44	2	2.72498	2.7535499999999997	2.78212	0.0168532	0.0168499	0.11068	0.103549
chr12	12935987	12936087	5081205	0	+	0.51	(0.476,0.515]	chr12	480251	78	INTRON	INTRON	GPRC5D-AS1	ENSG00000247498.11	ENST00000543515.8:ENST00000545914.5:ENST00000660059.1:ENST00000540198.1:ENST00000542078.2:ENST00000536029.1	lncRNA	lncRNA	lncRNA	lncRNA	2	40	2	2.69967	2.7534799999999997	2.80729	0.0195838	0.0126008	0.109483	0.0980703
chr16	15870602	15870701	6451770	0	-	0.484848	(0.476,0.515]	chr16	621907	27	INTRON	INTRON	CEP20	ENSG00000133393.13	ENST00000255759.11:ENST00000573968.5:ENST00000573087.5:ENST00000573396.5:ENST00000575744.5:ENST00000572415.5:ENST00000575073.5:ENST00000573429.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	40	2	2.69967	2.7534799999999997	2.80729	0.0195838	0.0126008	0.109483	0.0980703
chr21	43736853	43736953	7413331	0	+	0.51	(0.476,0.515]	chr21	755524	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	PDXK	ENSG00000160209.19	ENST00000398081.5:ENST00000468090.5:ENST00000291565.9:ENST00000398085.7:ENST00000470029.5:ENST00000498040.5:ENST00000327574.4:ENST00000472777.5:ENST00000476313.5:ENST00000481512.5:ENST00000621478.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	40	2	2.69967	2.7534799999999997	2.80729	0.0195838	0.0126008	0.109483	0.0980703
chr8	94536902	94537002	3993973	0	-	0.51	(0.476,0.515]	chr8	365662	4	SS5_PROX	SS5_PROX:INTRON	VIRMA	ENSG00000164944.12	ENST00000297591.10:ENST00000421249.2:ENST00000519001.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	54	2	2.68023	2.7534799999999997	2.82673	0.0134403	0.00353671	0.0946278	0.0546236
chr2	69919959	69920057	805556	0	+	0.377551	(0.35,0.378]	chr2	89914	34	INTRON	INTRON	MXD1	ENSG00000059728.11	ENST00000435990.5:ENST00000540449.5:ENST00000264444.7:ENST00000409442.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	148	2	2.61826	2.7533649999999996	2.88847	0.00206992	6.33785e-5	0.0411801	0.00658818
chr16	10411276	10411376	6286530	0	+	0.39	(0.378,0.408]	chr16	601961	184	INTRON	INTRON	ATF7IP2	ENSG00000166669.14	ENST00000564797.5:ENST00000396559.5:ENST00000396560.6:ENST00000562527.5:ENST00000561932.5:ENST00000543967.5:ENST00000562102.6:ENST00000535850.5:ENST00000569900.5:ENST00000569939.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	68	2	2.50099	2.753335	3.00568	0.00811866	0.00245021	0.0766625	0.0457892
chr3	177185682	177185781	1872331	0	-	0.393939	(0.378,0.408]	chr3	187438	144	INTRON	INTRON	TBL1XR1	ENSG00000177565.18	ENST00000457928.7:ENST00000430069.5:ENST00000673974.1:ENST00000352800.10:ENST00000422442.6:ENST00000428970.5:ENST00000424913.5:ENST00000437738.5:ENST00000431421.5:ENST00000635794.1:ENST00000630796.2:ENST00000450267.5:ENST00000630833.2:ENST00000431674.5:ENST00000422066.5:ENST00000443315.5:ENST00000627825.2:ENST00000427349.5:ENST00000413084.5:ENST00000637137.1:ENST00000491623.2:ENST00000637544.1:ENST00000636187.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	68	2	2.50099	2.753335	3.00568	0.00811866	0.00245021	0.0766625	0.0457892
chr3	61041346	61041446	1720032	0	-	0.43	(0.408,0.44]	chr3	176157	2190	INTRON	INTRON	FHIT	ENSG00000189283.10	ENST00000492590.6:ENST00000476844.5:ENST00000468189.5:ENST00000488467.5:ENST00000490952.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	58	2	2.68622	2.75332	2.82042	0.0120121	0.00418848	0.0962115	0.0572071
chr15	22501944	22502043	5974586	0	+	0.292929	(0.28,0.32]	chr15	568077	59	INTRON	INTRON	HERC2P2	ENSG00000276550.5	ENST00000613386.4	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	5	111	2	2.33573	2.753085	3.17044	0.00764237	5.14622e-4	0.0752681	0.0203753
chr1	223982933	223983021	643706	0	-	0.488636	(0.476,0.515]	chr1	76010	3	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GTF2IP20	ENSG00000272645.4	ENST00000634905.2:ENST00000431663.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	5	88	2	2.3346	2.7529	3.1712	0.00494807	4.95874e-4	0.0646039	0.0206925
chr1	41182632	41182732	430230	0	-	0.47	(0.44,0.476]	chr1	52248	198	INTRON	INTRON	SCMH1	ENSG00000010803.17	ENST00000695335.1:ENST00000372596.5:ENST00000372597.5:ENST00000337495.9:ENST00000695336.1	protein_coding	protein_coding	protein_coding	protein_coding	8	120	2	2.1371000000000002	2.752825	3.36855	0.00205988	1.94525e-4	0.0420839	0.0127418
chr12	19164137	19164237	5088615	0	+	0.33	(0.32,0.35]	chr12	480740	313	INTRON	INTRON	PLEKHA5	ENSG00000052126.15	ENST00000429027.7:ENST00000540972.5:ENST00000299275.10:ENST00000539256.5:ENST00000538714.5:ENST00000535357.5:ENST00000538034.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	63	2	2.22429	2.75268	3.28107	0.0226421	0.00262488	0.117557	0.0470772
chr7	74758000	74758100	3336302	0	+	0.41	(0.408,0.44]	chr7	310539	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	GTF2I	ENSG00000263001.8	ENST00000650807.1:ENST00000690345.1:ENST00000573035.6:ENST00000614986.4:ENST00000620879.4:ENST00000621734.4:ENST00000621040.4:ENST00000614048.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	73	2	2.45003	2.75268	3.05533	0.00990006	6.50769e-4	0.0838372	0.0231135
chr3	15825600	15825700	1624103	0	-	0.33	(0.32,0.35]	chr3	168034	109	INTRON	INTRON	ANKRD28	ENSG00000206560.12	ENST00000399451.6:ENST00000412318.5:ENST00000439830.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	75	2	2.2643	2.752585	3.24087	0.00712852	0.00420518	0.0756118	0.0572185
chr3	49784569	49784669	1694864	0	-	0.47	(0.44,0.476]	chr3	173818	358	INTRON	INTRON	IP6K1	ENSG00000176095.12	ENST00000321599.9:ENST00000395238.5:ENST00000613416.4:ENST00000468463.5:ENST00000460540.1:ENST00000498149.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	65	2	2.42643	2.752525	3.07862	0.0060153	0.0033369	0.0674604	0.0528877
chr14	55273788	55273886	5725817	0	+	0.469388	(0.44,0.476]	chr14	543446	11	INTRON	INTRON	FBXO34	ENSG00000178974.11	ENST00000681400.1:ENST00000681904.1:ENST00000679934.1:ENST00000681074.1:ENST00000680682.1:ENST00000680658.1:ENST00000313833.5:ENST00000554940.1:ENST00000440021.1:ENST00000555087.1:ENST00000557647.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	119	2	2.68583	2.75252	2.81921	7.10539e-4	3.91317e-4	0.0243894	0.0178091
chr5	104154095	104154195	2441956	0	+	0.33	(0.32,0.35]	chr5	234410	488	INTRON	INTRON	LINC02163	ENSG00000251026.2	ENST00000662211.1:ENST00000666145.1	lncRNA	lncRNA	lncRNA	lncRNA	6	96	2	1.75437	2.75244	3.75051	0.017109	5.8762e-4	0.110916	0.0224695
chr2	27348428	27348527	1086794	0	-	0.262626	[0,0.28]	chr2	116356	45	INTRON	INTRON	GTF3C2	ENSG00000115207.15	ENST00000359541.6:ENST00000264720.8:ENST00000457748.1:ENST00000423998.1	protein_coding	protein_coding	protein_coding	protein_coding	3	78	2	2.72768	2.75242	2.77716	0.022039	0.00405445	0.115395	0.0578376
chr12	120895084	120895184	5435815	0	-	0.4	(0.378,0.408]	chr12	519663	596	INTRON	INTRON	SPPL3	ENSG00000157837.16	ENST00000353487.7:ENST00000536996.5:ENST00000543608.5:ENST00000543854.5	protein_coding	protein_coding	protein_coding	protein_coding	3	56	2	2.65815	2.75239	2.84663	0.0133954	0.00391167	0.0946278	0.0569957
chr1	40049169	40049269	79705	0	+	0.42	(0.408,0.44]	chr1	10330	73	INTRON	INTRON	CAP1	ENSG00000131236.18	ENST00000372797.7:ENST00000372802.5:ENST00000449311.5:ENST00000421589.5:ENST00000414893.5:ENST00000372792.7:ENST00000372805.8:ENST00000414281.5:ENST00000420216.5:ENST00000372798.5:ENST00000340450.7:ENST00000435719.5:ENST00000427843.5:ENST00000424977.1:ENST00000417287.5:ENST00000446031.1	protein_coding	protein_coding	protein_coding	protein_coding	4	67	2	1.8749	2.75231	3.62972	0.0264246	7.19047e-4	0.133676	0.0246202
chr7	141756973	141757073	3440290	0	+	0.34	(0.32,0.35]	chr7	320701	62	INTRON	INTRON	SSBP1	ENSG00000106028.11	ENST00000465582.5	protein_coding	protein_coding	protein_coding	protein_coding	4	81	2	2.68921	2.752205	2.8152	0.0230336	6.37027e-4	0.118056	0.0228285
chr12	1788384	1788481	5065153	0	+	0.463918	(0.44,0.476]	chr12	477914	25	UTR3	UTR3:EXON_MRNA	ADIPOR2	ENSG00000006831.10	ENST00000357103.5	protein_coding	protein_coding	protein_coding	protein_coding	7	120	2	2.53021	2.7522	2.97419	8.87528e-4	3.31666e-4	0.0271952	0.0168836
chr10	47541866	47541966	4609364	0	-	0.39	(0.378,0.408]	chr10	424650	3	SS5_PROX	SS5_PROX:INTRON	ENSG00000254929:BMS1P2	ENSG00000254929.6:ENSG00000251079.6	ENST00000605970.5:ENST00000431840.2:ENST00000532854.5:ENST00000450360.2	lncRNA	lncRNA	lncRNA:transcribed_unprocessed_pseudogene	lncRNA:processed_transcript:transcribed_unprocessed_pseudogene	3	56	2	2.35527	2.7520949999999997	3.14892	0.0121511	0.00499984	0.0963966	0.0617433
chr3	37082145	37082244	1655672	0	-	0.393939	(0.378,0.408]	chr3	169908	67	INTRON	INTRON	LRRFIP2	ENSG00000093167.18	ENST00000336686.9:ENST00000354379.8:ENST00000421276.6:ENST00000396428.6:ENST00000440230.5:ENST00000440742.2:ENST00000416425.5	protein_coding	protein_coding	protein_coding	protein_coding	4	69	2	1.63458	2.752045	3.86951	0.0573057	1.55755e-4	0.167723	0.0106835
chr7	64816752	64816852	3320573	0	+	0.44	(0.408,0.44]	chr7	308722	7	INTRON	INTRON	ZNF138	ENSG00000197008.10	ENST00000359735.7:ENST00000440155.6:ENST00000494380.5:ENST00000307355.12:ENST00000437743.1:ENST00000440598.2:ENST00000430838.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	54	2	2.55103	2.751995	2.95296	0.00929354	0.00587353	0.0817766	0.0690758
chr7	130080203	130080303	3413691	0	+	0.43	(0.408,0.44]	chr7	319098	90	INTRON	INTRON	KLHDC10	ENSG00000128607.14	ENST00000335420.10:ENST00000463413.1:ENST00000468226.1	protein_coding	protein_coding	protein_coding	protein_coding	3	54	2	2.55103	2.751995	2.95296	0.00929354	0.00587353	0.0817766	0.0690758
chr14	102609419	102609519	5822701	0	+	0.44	(0.408,0.44]	chr14	552490	157	INTRON	INTRON	RCOR1	ENSG00000089902.10	ENST00000262241.7	protein_coding	protein_coding	protein_coding	protein_coding	3	54	2	2.44674	2.751895	3.05705	0.00868283	0.00658331	0.0842798	0.0701901
chr14	103445538	103445637	5826237	0	+	0.414141	(0.408,0.44]	chr14	552839	36	INTRON	INTRON	MARK3	ENSG00000075413.19	ENST00000678179.1:ENST00000676838.1:ENST00000677348.1:ENST00000677404.1:ENST00000676694.1:ENST00000676938.1:ENST00000678619.1:ENST00000676897.1:ENST00000677214.1:ENST00000677942.1:ENST00000676830.1:ENST00000678999.1:ENST00000677228.1:ENST00000556744.2:ENST00000677104.1:ENST00000679330.1:ENST00000560417.6:ENST00000440884.7:ENST00000676475.1:ENST00000677035.1:ENST00000678022.1:ENST00000677560.1:ENST00000561314.6:ENST00000429436.7:ENST00000677118.1:ENST00000676564.1:ENST00000678169.1:ENST00000678175.1:ENST00000678897.1:ENST00000678278.1:ENST00000676645.1:ENST00000677829.1:ENST00000678302.1:ENST00000677133.1:ENST00000561164.2:ENST00000558223.6:ENST00000559328.6:ENST00000678207.1:ENST00000677360.1:ENST00000676905.1:ENST00000678343.1:ENST00000677347.1:ENST00000678071.1:ENST00000677432.1:ENST00000678237.1:ENST00000677604.1:ENST00000676518.1:ENST00000677051.1:ENST00000677857.1:ENST00000677869.1:ENST00000678423.1:ENST00000560603.6:ENST00000416682.6:ENST00000303622.13:ENST00000216288.11:ENST00000679105.1:ENST00000553942.5:ENST00000335102.9:ENST00000561225.1:ENST00000678091.1:ENST00000561071.5:ENST00000558698.5:ENST00000559268.5:ENST00000560731.5:ENST00000676745.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	54	2	2.44674	2.751895	3.05705	0.00868283	0.00658331	0.0842798	0.0701901
chr3	19966947	19967047	1376234	0	+	0.43	(0.408,0.44]	chr3	145051	137	INTRON	INTRON	RAB5A	ENSG00000144566.11	ENST00000273047.9:ENST00000412966.5:ENST00000446547.5:ENST00000422242.1:ENST00000469122.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	54	2	2.44674	2.751895	3.05705	0.00868283	0.00658331	0.0842798	0.0701901
chr17	75152704	75152804	6836073	0	-	0.44	(0.408,0.44]	chr17	675490	4	SS5_PROX	SS5_PROX:INTRON	JPT1	ENSG00000189159.16	ENST00000409753.8:ENST00000476258.5:ENST00000482348.5:ENST00000304834.11:ENST00000356033.8:ENST00000470924.5:ENST00000481647.5:ENST00000580380.1:ENST00000581874.1:ENST00000584079.5:ENST00000465454.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	57	2	2.6117	2.7518149999999997	2.89193	0.00950364	0.00555224	0.0863579	0.0648867
chr7	151072636	151072732	3448292	0	+	0.375	(0.35,0.378]	chr7	322123	1	INTRON	INTRON	SLC4A2	ENSG00000164889.15	ENST00000485713.5:ENST00000413384.7:ENST00000677246.1:ENST00000392826.6:ENST00000461735.1:ENST00000460010.1:ENST00000482697.1:ENST00000472204.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	81	2	2.24809	2.7517899999999997	3.25549	0.00363602	0.00361961	0.0554656	0.0535085
chr18	12417134	12417234	6875235	0	+	0.35	(0.32,0.35]	chr18	681138	59	INTRON	INTRON	PRELID3A	ENSG00000141391.14	ENST00000336990.8:ENST00000590956.5:ENST00000440960.6:ENST00000588729.5:ENST00000589565.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	75	2	2.3011	2.75163	3.20216	0.00617969	0.00480708	0.0713552	0.0602209
chr1	100978857	100978957	175175	0	+	0.29	(0.28,0.32]	chr1	18985	41	UTR3	UTR3:EXON_MRNA	SLC30A7	ENSG00000162695.12	ENST00000370112.8:ENST00000357650.9	protein_coding	protein_coding	protein_coding	protein_coding	2	51	2	2.32871	2.75162	3.17453	0.0581621	0.00429297	0.167723	0.0599065
chr10	73386188	73386288	4649131	0	-	0.3	(0.28,0.32]	chr10	427763	21	INTRON	INTRON	ANXA7	ENSG00000138279.16	ENST00000372921.10:ENST00000372919.8:ENST00000492380.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	51	2	2.32871	2.75162	3.17453	0.0581621	0.00429297	0.167723	0.0599065
chr12	111549981	111550081	5412733	0	-	0.52	(0.515,0.57]	chr12	516916	243	INTRON	INTRON	ATXN2	ENSG00000204842.18	ENST00000642389.2:ENST00000608853.5:ENST00000672613.1:ENST00000673436.1:ENST00000643669.2:ENST00000616825.4:ENST00000389153.10:ENST00000550104.5:ENST00000483311.6:ENST00000672335.1:ENST00000492467.6:ENST00000673557.1:ENST00000673283.1:ENST00000673449.1:ENST00000535949.5:ENST00000542287.6:ENST00000644883.1:ENST00000647305.1:ENST00000671792.1:ENST00000392645.6:ENST00000672105.1:ENST00000471866.5:ENST00000549455.1:ENST00000548492.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	62	2	2.53845	2.75156	2.96467	0.00632226	8.94279e-4	0.0687526	0.0273458
chr2	64643851	64643951	1141262	0	-	0.39	(0.378,0.408]	chr2	122134	66	INTRON	INTRON	SERTAD2	ENSG00000179833.4	ENST00000313349.3:ENST00000476805.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	43	2	2.54849	2.7515400000000003	2.95459	0.0273196	0.00957623	0.136494	0.0820838
chr7	102475880	102475980	3588483	0	-	0.38	(0.378,0.408]	chr7	334976	3	SS5_PROX	SS5_PROX:INTRON	POLR2J	ENSG00000005075.16	ENST00000292614.10	protein_coding	protein_coding	protein_coding	protein_coding	2	43	2	2.54849	2.7515400000000003	2.95459	0.0273196	0.00957623	0.136494	0.0820838
chr5	612843	612943	2313380	0	+	0.43	(0.408,0.44]	chr5	223833	4	SS5_PROX	SS5_PROX:INTRON	CEP72	ENSG00000112877.8	ENST00000264935.6	protein_coding	protein_coding	protein_coding	protein_coding	5	88	2	2.15938	2.751535	3.34369	0.011260300000000001	1.46092e-4	0.0884004	0.0105174
chr6	147341774	147341874	2990102	0	+	0.37	(0.35,0.378]	chr6	280116	20	INTRON	INTRON	STXBP5	ENSG00000164506.15	ENST00000321680.11:ENST00000367481.7:ENST00000367480.7:ENST00000367475.6:ENST00000392291.2	protein_coding	protein_coding	protein_coding	protein_coding	9	169	2	2.50365	2.751475	2.9993	5.68631e-4	1.42377e-4	0.0217398	0.0109062
chr15	22578154	22578253	5975386	0	+	0.585859	(0.57,1]	chr15	568232	2	INTRON	INTRON	HERC2P2	ENSG00000276550.5	ENST00000613386.4:ENST00000619021.4:ENST00000690192.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	4	35	2	2.07956	2.751395	3.42323	0.013114	8.58388e-4	0.0998629	0.0267428
chr10	125058729	125058829	4713316	0	-	0.49	(0.476,0.515]	chr10	434897	192	INTRON	INTRON	CTBP2	ENSG00000175029.17	ENST00000337195.9:ENST00000411419.6:ENST00000494626.6:ENST00000531469.5:ENST00000460976.5:ENST00000476817.1:ENST00000530884.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	91	2	2.68023	2.7513699999999996	2.82251	0.00353671	6.78359e-4	0.0546236	0.023827
chr9	128168642	128168734	4357606	0	-	0.467391	(0.44,0.476]	chr9	400245	2	SS5_PROX	SS5_PROX:INTRON	CIZ1	ENSG00000148337.22	ENST00000651955.1:ENST00000471773.5:ENST00000372938.10:ENST00000372954.5:ENST00000538431.5:ENST00000357558.9:ENST00000629610.2:ENST00000372948.7:ENST00000277465.8:ENST00000634901.1:ENST00000415526.5:ENST00000471839.5:ENST00000485001.1:ENST00000476727.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	168	2	2.588	2.7513449999999997	2.91469	4.74756e-4	4.52924e-5	0.0201674	0.00547142
chr2	84440546	84440646	1168645	0	-	0.39	(0.378,0.408]	chr2	124422	1	SS5_PROX	SS5_PROX:INTRON	SUCLG1	ENSG00000163541.12	ENST00000393868.7:ENST00000651342.1:ENST00000488234.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	42	2	2.38873	2.751165	3.1136	0.0458857	0.00443339	0.149888	0.061054
chr2	187536248	187536347	1289343	0	-	0.383838	(0.378,0.408]	chr2	135621	64	INTRON	INTRON	TFPI	ENSG00000003436.16	ENST00000233156.9:ENST00000409676.5:ENST00000339091.8:ENST00000421427.5:ENST00000437725.5:ENST00000453013.5:ENST00000417013.5:ENST00000420747.1	protein_coding	protein_coding	protein_coding	protein_coding	4	79	2	2.46345	2.751165	3.03888	0.00827342	0.00102794	0.0813266	0.029231300000000002
chr8	140987142	140987242	4079937	0	-	0.38	(0.378,0.408]	chr8	370590	26	INTRON	INTRON	PTK2	ENSG00000169398.20	ENST00000696786.1:ENST00000522684.5:ENST00000395218.3:ENST00000521059.5:ENST00000519993.5:ENST00000340930.7:ENST00000524357.5:ENST00000521791.5:ENST00000523067.5:ENST00000520828.5:ENST00000519881.5:ENST00000520892.5:ENST00000517453.5:ENST00000520045.5:ENST00000521332.5:ENST00000524040.5:ENST00000523679.1:ENST00000524257.5:ENST00000523797.1:ENST00000519635.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	42	2	2.38873	2.751165	3.1136	0.0458857	0.00443339	0.149888	0.061054
chr3	32568581	32568678	1650100	0	-	0.402062	(0.378,0.408]	chr3	169163	15	INTRON	INTRON	DYNC1LI1	ENSG00000144635.9	ENST00000273130.9:ENST00000481915.5:ENST00000432458.6:ENST00000413350.5:ENST00000424991.1:ENST00000475193.1:ENST00000474077.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	125	2	2.20432	2.751115	3.29791	0.00529064	3.60429e-5	0.0636343	0.00481059
chr11	47520558	47520658	4950075	0	-	0.51	(0.476,0.515]	chr11	464238	58	INTRON	INTRON	CELF1	ENSG00000149187.19	ENST00000310513.10:ENST00000687097.1:ENST00000531165.5:ENST00000532048.5:ENST00000530151.5:ENST00000525841.5:ENST00000528434.5:ENST00000543178.5:ENST00000526419.1:ENST00000528538.5:ENST00000526277.1	protein_coding	protein_coding	protein_coding	protein_coding	4	65	2	1.96833	2.750975	3.53362	0.0195007	0.00102391	0.119967	0.029231300000000002
chr10	68460821	68460919	4639657	0	-	0.44898	(0.44,0.476]	chr10	426716	12	INTRON	INTRON	DNA2	ENSG00000138346.15	ENST00000358410.8:ENST00000551118.6:ENST00000399179.6:ENST00000399180.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	54	2	2.19078	2.75094	3.3111	0.0226089	0.0020006	0.117489	0.0412555
chr3	9416032	9416132	1359069	0	+	0.33	(0.32,0.35]	chr3	142658	3	SS5_PROX	SS5_PROX:INTRON	SETD5	ENSG00000168137.20	ENST00000402198.7:ENST00000431285.5:ENST00000683012.1:ENST00000463180.5:ENST00000478475.5:ENST00000415650.5:ENST00000682536.1:ENST00000663774.1:ENST00000665872.1:ENST00000666307.1:ENST00000693430.1:ENST00000691925.1:ENST00000684606.1:ENST00000691175.1:ENST00000688835.1:ENST00000683262.1:ENST00000443339.5:ENST00000406341.5:ENST00000670063.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	106	2	2.04813	2.75087	3.45361	0.00362627	0.00193809	0.055479	0.0399255
chr1	29068232	29068332	60515	0	+	0.33	(0.32,0.35]	chr1	7737	1	SS3_PROX	SS3_PROX:INTRON	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000647918.1:ENST00000646800.1:ENST00000644342.1:ENST00000646189.1:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000373798.5:ENST00000644600.1:ENST00000649674.1:ENST00000643173.1:ENST00000343067.9:ENST00000644780.1:ENST00000650265.1:ENST00000643604.1:ENST00000349460.9:ENST00000645111.1:ENST00000643302.1:ENST00000636666.1:ENST00000644848.1:ENST00000644470.1:ENST00000646871.1:ENST00000488277.1:ENST00000490308.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	65	2	2.57263	2.75078	2.92893	0.0312297	0.00138	0.13151	0.0341261
chr16	85610009	85610109	6415932	0	+	0.62	(0.57,1]	chr16	615470	533	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	4	39	2	2.56996	2.75073	2.9315	0.00499145	9.1984e-4	0.0646039	0.0278396
chr15	83471867	83471967	6082225	0	+	0.46	(0.44,0.476]	chr15	579031	239	INTRON	INTRON	SH3GL3	ENSG00000140600.17	ENST00000492099.1:ENST00000427482.7:ENST00000563901.5:ENST00000324537.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	41	2	2.29842	2.75066	3.2029	0.0552483	0.00308681	0.165463	0.0510391
chr19	11014811	11014911	7016122	0	+	0.46	(0.44,0.476]	chr19	697272	13	INTRON	INTRON	SMARCA4	ENSG00000127616.20	ENST00000644737.1:ENST00000642726.1:ENST00000646484.1:ENST00000643549.1:ENST00000643296.1:ENST00000647230.1:ENST00000642628.1:ENST00000646510.1:ENST00000429416.8:ENST00000344626.10:ENST00000646693.2:ENST00000645460.1:ENST00000541122.6:ENST00000589677.5:ENST00000444061.8:ENST00000590574.6:ENST00000591545.6:ENST00000643995.1:ENST00000644327.1:ENST00000644065.1:ENST00000644963.1:ENST00000643208.1:ENST00000645061.1:ENST00000642350.1:ENST00000644290.1:ENST00000647268.1:ENST00000643857.1:ENST00000644267.1:ENST00000646183.1:ENST00000646746.1:ENST00000643534.1:ENST00000646513.1:ENST00000646593.1:ENST00000645648.1:ENST00000592604.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	41	2	2.29842	2.75066	3.2029	0.0552483	0.00308681	0.165463	0.0510391
chr15	65774471	65774571	6209618	0	-	0.39	(0.378,0.408]	chr15	592617	72	INTRON	INTRON	DENND4A	ENSG00000174485.16	ENST00000443035.8:ENST00000431932.6:ENST00000564674.5:ENST00000568515.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	42	2	2.71183	2.750645	2.78946	0.0170789	0.0158859	0.110899	0.101453
chr8	98623565	98623665	3998132	0	-	0.52	(0.515,0.57]	chr8	366060	214	INTRON	INTRON	STK3	ENSG00000104375.17	ENST00000617590.1:ENST00000419617.7:ENST00000523601.5:ENST00000518582.5:ENST00000518165.5:ENST00000521649.5:ENST00000424861.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	56	2	1.97035	2.7506	3.53085	0.0195832	6.59951e-4	0.109483	0.0232396
chr12	50433224	50433322	5136664	0	+	0.336735	(0.32,0.35]	chr12	484394	23	INTRON	INTRON	LARP4	ENSG00000161813.23	ENST00000293618.12:ENST00000429001.7:ENST00000398473.7:ENST00000548993.5:ENST00000522085.5:ENST00000518444.5:ENST00000551886.5:ENST00000518561.5:ENST00000347328.9:ENST00000550260.1:ENST00000517559.5	protein_coding	protein_coding	protein_coding	protein_coding	6	51	2	1.32932	2.750565	4.17181	0.0540385	0.04531	0.181713	0.149888
chr9	131167713	131167812	4216063	0	+	0.313131	(0.28,0.32]	chr9	386613	32	INTRON	INTRON	NUP214	ENSG00000126883.19	ENST00000695497.1:ENST00000695498.1:ENST00000695496.1:ENST00000695495.1:ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000525980.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	94	2	1.86825	2.750505	3.63276	0.017708	0.00114475	0.11319	0.0308149
chr1	6190855	6190954	366111	0	-	0.424242	(0.408,0.44]	chr1	43018	37	INTRON	INTRON	RPL22	ENSG00000116251.11	ENST00000234875.9:ENST00000480661.1:ENST00000497965.5:ENST00000471204.5:ENST00000465387.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	106	2	2.70586	2.75048	2.7951	9.14702e-4	8.18693e-4	0.027804	0.0264086
chr9	130805053	130805153	4214775	0	+	0.44	(0.408,0.44]	chr9	386427	902	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000393293.4	protein_coding	protein_coding	protein_coding	protein_coding	6	106	2	2.70586	2.75048	2.7951	9.14702e-4	8.18693e-4	0.027804	0.0264086
chr2	197858404	197858504	969640	0	+	0.41	(0.408,0.44]	chr2	104858	477	INTRON	INTRON	PLCL1	ENSG00000115896.16	ENST00000428675.6:ENST00000435320.1:ENST00000487695.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	55	2	2.21238	2.75045	3.28852	0.0193525	0.00287185	0.119831	0.0474836
chrX	44995182	44995281	7649825	0	+	0.383838	(0.378,0.408]	chrX	782744	181	INTRON	INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000675440.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000621147.5:ENST00000475233.1:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	37	2	1.51223	2.75045	3.98867	0.051139	0.0507	0.176696	0.156383
chr20	62929596	62929696	7362487	0	-	0.46	(0.44,0.476]	chr20	751216	4	INTRON	INTRON	DIDO1	ENSG00000101191.17	ENST00000266070.8:ENST00000370371.8	protein_coding	protein_coding	protein_coding	protein_coding	11	186	2	2.71045	2.75033	2.79021	1.42895e-4	9.80615e-5	0.0109362	0.00832973
chr12	120877406	120877506	5435638	0	-	0.41	(0.408,0.44]	chr12	519663	419	INTRON	INTRON	SPPL3	ENSG00000157837.16	ENST00000353487.7:ENST00000536996.5:ENST00000543608.5:ENST00000543854.5	protein_coding	protein_coding	protein_coding	protein_coding	2	42	2	2.18807	2.7503200000000003	3.31257	0.0708044	0.00198621	0.184528	0.0411469
chr2	113469073	113469171	853793	0	+	0.234694	[0,0.28]	chr2	95826	6	EXON_MRNA	EXON_MRNA:INTRON	CBWD2	ENSG00000136682.16	ENST00000259199.9:ENST00000416503.6:ENST00000358604.7:ENST00000456188.5:ENST00000479583.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	93	2	2.16436	2.750285	3.33621	0.0120935	0.00427056	0.0962599	0.0573912
chr2	101841443	101841538	837506	0	+	0.421053	(0.408,0.44]	chr2	93952	11	INTRON	INTRON	MAP4K4	ENSG00000071054.17	ENST00000324219.9:ENST00000350878.9:ENST00000425019.6:ENST00000625522.3:ENST00000413150.6:ENST00000634702.1:ENST00000456652.5:ENST00000347699.8:ENST00000417294.5:ENST00000627726.3:ENST00000476609.1:ENST00000421882.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	120	2	2.33816	2.75024	3.16232	0.00289605	7.71549e-5	0.0477416	0.00735438
chr3	108055966	108056066	1768933	0	-	0.46	(0.44,0.476]	chr3	178927	4	SS3_PROX	SS3_PROX:INTRON	CD47	ENSG00000196776.17	ENST00000361309.6:ENST00000355354.13:ENST00000517766.5:ENST00000398258.7	protein_coding	protein_coding	protein_coding	protein_coding	6	100	2	2.68583	2.7502250000000004	2.81462	0.00247064	3.91317e-4	0.0446195	0.0178091
chr5	43473124	43473223	2614730	0	-	0.30303	(0.28,0.32]	chr5	248552	182	INTRON	INTRON	TMEM267	ENSG00000151881.15	ENST00000397080.8:ENST00000500337.6:ENST00000512085.5:ENST00000511525.1:ENST00000510130.1:ENST00000506860.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	185	2	2.49702	2.7501800000000003	3.00334	5.23416e-4	4.57941e-4	0.0210842	0.0193643
chr4	770399	770498	2093302	0	-	0.464646	(0.44,0.476]	chr4	206823	24	INTRON	INTRON	ENSG00000249592	ENSG00000249592.7	ENST00000660016.1:ENST00000665579.1:ENST00000503571.5:ENST00000652800.1:ENST00000507446.1	lncRNA	lncRNA	lncRNA	lncRNA	3	54	2	2.13779	2.75005	3.36231	0.0264596	0.00161678	0.122506	0.0369204
chr12	22650445	22650544	5094999	0	+	0.333333	(0.32,0.35]	chr12	481236	40	INTRON	INTRON	ETNK1	ENSG00000139163.16	ENST00000671733.1:ENST00000266517.9:ENST00000538218.2:ENST00000673496.1:ENST00000673406.1:ENST00000672995.1:ENST00000539974.1:ENST00000673188.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	63	2	2.04237	2.750045	3.45772	0.0375542	0.00128487	0.140222	0.0333518
chr5	141582056	141582156	2739808	0	-	0.27	[0,0.28]	chr5	258135	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DIAPH1	ENSG00000131504.18	ENST00000647433.1:ENST00000389054.8:ENST00000518047.5:ENST00000647330.1:ENST00000523100.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	57	2	2.64309	2.749995	2.8569	0.0308646	0.013822	0.13151	0.10247
chr10	48327962	48328062	4431202	0	+	0.37	(0.35,0.378]	chr10	408569	16	INTRON	INTRON	MAPK8	ENSG00000107643.17	ENST00000395611.7:ENST00000432379.5:ENST00000374189.6:ENST00000429041.6:ENST00000374179.8:ENST00000426557.5:ENST00000476134.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	114	2	2.64221	2.749925	2.85764	0.00186959	4.6759e-4	0.0390476	0.0195867
chr10	35037770	35037869	4600612	0	-	0.474747	(0.44,0.476]	chr10	423803	26	EXON_MRNA	EXON_MRNA:INTRON	CUL2	ENSG00000108094.17	ENST00000626172.3:ENST00000374751.7:ENST00000374748.5:ENST00000374749.8:ENST00000690123.1:ENST00000537177.6:ENST00000374746.6:ENST00000691974.1:ENST00000688571.1:ENST00000690393.1:ENST00000690092.1:ENST00000374754.9:ENST00000688252.1:ENST00000691272.1:ENST00000688390.1:ENST00000687282.1:ENST00000691201.1:ENST00000687194.1:ENST00000691962.1:ENST00000691858.1:ENST00000691263.1:ENST00000687524.1:ENST00000673636.2:ENST00000692866.1:ENST00000693739.1:ENST00000686302.1:ENST00000685681.1:ENST00000421317.5:ENST00000684965.1:ENST00000691457.1:ENST00000688541.1:ENST00000689330.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	41	2	2.58033	2.749915	2.9195	0.0247511	0.0102021	0.131869	0.0850389
chr17	45269146	45269242	6618111	0	+	0.458333	(0.44,0.476]	chr17	645410	22	EXON_LNCRNA	EXON_LNCRNA	MAP3K14-AS1	ENSG00000267278.6	ENST00000657572.1:ENST00000655903.1:ENST00000590100.6:ENST00000586450.6	lncRNA	lncRNA	lncRNA	lncRNA	2	41	2	2.58033	2.749915	2.9195	0.0247511	0.0102021	0.131869	0.0850389
chr7	139059448	139059547	3655908	0	-	0.464646	(0.44,0.476]	chr7	339403	38	INTRON	INTRON	ZC3HAV1	ENSG00000105939.14	ENST00000242351.10:ENST00000464606.5:ENST00000680309.1	protein_coding	protein_coding	protein_coding	protein_coding	2	41	2	2.58033	2.749915	2.9195	0.0247511	0.0102021	0.131869	0.0850389
chr9	128121668	128121767	4357435	0	-	0.454545	(0.44,0.476]	chr9	400185	5	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	PTGES2	ENSG00000148334.16	ENST00000338961.11:ENST00000277462.9:ENST00000617202.4:ENST00000678916.1:ENST00000678174.1:ENST00000679345.1:ENST00000677980.1:ENST00000677651.1:ENST00000676562.1:ENST00000476655.6:ENST00000493205.6:ENST00000677691.1:ENST00000497109.6:ENST00000496594.5:ENST00000483625.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	41	2	2.58033	2.749915	2.9195	0.0247511	0.0102021	0.131869	0.0850389
chrX	74588252	74588352	7841681	0	-	0.49	(0.476,0.515]	chrX	799768	54	UTR3	UTR3:EXON_MRNA	RLIM	ENSG00000131263.13	ENST00000332687.11	protein_coding	protein_coding	protein_coding	protein_coding	21	313	2	2.06582	2.7498899999999997	3.43396	3.71033e-4	1.42962e-6	0.0173606	7.79027e-4
chr11	63630739	63630839	4962408	0	-	0.5	(0.476,0.515]	chr11	467126	3	SS5_PROX	SS5_PROX:INTRON	ATL3	ENSG00000184743.13	ENST00000398868.8:ENST00000538786.1	protein_coding	protein_coding	protein_coding	protein_coding	5	86	2	2.59304	2.74986	2.90668	0.00164243	0.00158794	0.0369207	0.0367961
chr15	79887203	79887302	6240802	0	-	0.323232	(0.32,0.35]	chr15	595751	92	INTRON	INTRON	MTHFS:ST20-MTHFS	ENSG00000136371.11:ENSG00000259332.3	ENST00000258874.4:ENST00000559722.2:ENST00000615374.5:ENST00000479961.1:ENST00000494999.1	protein_coding	protein_coding	protein_coding	protein_coding	3	63	2	2.2664	2.749855	3.23331	0.0199969	0.00315414	0.109608	0.0515261
chr14	37113684	37113784	5877424	0	-	0.53	(0.515,0.57]	chr14	558013	2383	INTRON	INTRON	SLC25A21	ENSG00000183032.12	ENST00000331299.6:ENST00000555449.5:ENST00000557611.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	56	2	2.01978	2.749685	3.47959	0.0165522	8.38022e-4	0.102621	0.0263691
chr15	82396701	82396799	6075949	0	+	0.285714	(0.28,0.32]	chr15	578731	44	INTRON	INTRON	UBE2Q2P2	ENSG00000259429.5	ENST00000618775.4:ENST00000613592.4	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	3	70	2	1.81582	2.7496799999999997	3.68354	0.068122	5.5135e-4	0.184298	0.0213455
chrX	114037867	114037967	7868419	0	-	0.19	[0,0.28]	chrX	801551	460	INTRON	INTRON	XACT	ENSG00000241743.4	ENST00000468762.3:ENST00000649506.1	lncRNA	lncRNA	lncRNA	lncRNA	3	77	2	2.56073	2.749615	2.9385	0.0142776	0.00743095	0.0963703	0.0772645
chr17	5423718	5423815	6551762	0	+	0.43299	(0.408,0.44]	chr17	636009	5	INTRON	INTRON	RPAIN	ENSG00000129197.15	ENST00000573577.5:ENST00000571558.5:ENST00000575599.5:ENST00000571043.5:ENST00000571613.5:ENST00000539417.6:ENST00000381208.9:ENST00000536255.6:ENST00000327154.10:ENST00000381209.8:ENST00000575112.5:ENST00000570883.5:ENST00000573126.1:ENST00000405578.8:ENST00000574003.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	130	2	2.02208	2.749495	3.47691	0.00251022	1.1563e-4	0.0465056	0.00969484
chr7	119841242	119841342	3629753	0	-	0.51	(0.476,0.515]	chr7	337335	400	INTRON	INTRON	LINC02476	ENSG00000225546.6	ENST00000660268.1:ENST00000431071.5:ENST00000426413.2	lncRNA	lncRNA	lncRNA	lncRNA	3	54	2	2.365	2.749445	3.13389	0.0128901	0.00405473	0.0926667	0.0578376
chr1	65304651	65304751	136040	0	+	0.43	(0.408,0.44]	chr1	15346	394	INTRON	INTRON	DNAJC6	ENSG00000116675.16	ENST00000463018.5:ENST00000494710.6:ENST00000263441.11:ENST00000395325.7:ENST00000483402.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	74	2	2.04842	2.749305	3.45019	0.00797555	0.00152664	0.0798772	0.0353936
chr1	31062315	31062415	412866	0	-	0.53	(0.515,0.57]	chr1	49752	5	INTRON	INTRON	PUM1	ENSG00000134644.16	ENST00000426105.7:ENST00000373747.7:ENST00000257075.9:ENST00000424085.6:ENST00000525843.5:ENST00000440538.6:ENST00000373741.8:ENST00000373742.6:ENST00000526215.5:ENST00000525948.5:ENST00000480602.1:ENST00000524516.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	37	2	2.35125	2.749275	3.1473	0.0436431	0.00397184	0.162255	0.0549214
chr12	46442523	46442623	5125121	0	+	0.41	(0.408,0.44]	chr12	483428	299	INTRON	INTRON	ENSG00000257261	ENSG00000257261.7	ENST00000687751.1:ENST00000667191.1:ENST00000663959.1:ENST00000666025.1:ENST00000611243.2:ENST00000666942.1:ENST00000551503.5:ENST00000657145.1	lncRNA	lncRNA	lncRNA	lncRNA	2	42	2	2.49258	2.749265	3.00595	0.0314608	0.00781452	0.144381	0.0759016
chr13	99287374	99287474	5525306	0	+	0.41	(0.408,0.44]	chr13	528241	424	INTRON	INTRON	UBAC2	ENSG00000134882.16	ENST00000355700.9:ENST00000403766.8:ENST00000468067.5:ENST00000473091.5:ENST00000376440.6:ENST00000494576.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	42	2	2.49258	2.749265	3.00595	0.0314608	0.00781452	0.144381	0.0759016
chr1	8465446	8465542	370243	0	-	0.458333	(0.44,0.476]	chr1	43462	6	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000377464.5:ENST00000400907.6:ENST00000656437.1:ENST00000464972.5:ENST00000659924.1:ENST00000480342.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	40	2	2.60774	2.749105	2.89047	0.0255874	0.00955699	0.120269	0.0863913
chr1	174501443	174501543	260546	0	+	0.46	(0.44,0.476]	chr1	30824	520	INTRON	INTRON	RABGAP1L	ENSG00000152061.24	ENST00000357444.10:ENST00000251507.8:ENST00000681986.1:ENST00000367690.5:ENST00000526253.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	40	2	2.60774	2.749105	2.89047	0.0255874	0.00955699	0.120269	0.0863913
chr11	33719416	33719513	4941165	0	-	0.474227	(0.44,0.476]	chr11	462922	21	EXON_MRNA	EXON_MRNA:INTRON	CD59	ENSG00000085063.17	ENST00000642928.2:ENST00000651785.1:ENST00000652678.1:ENST00000395850.9:ENST00000528987.1:ENST00000652086.1:ENST00000426650.7:ENST00000533403.6:ENST00000415002.7:ENST00000445143.6:ENST00000437761.6:ENST00000351554.8:ENST00000527577.5:ENST00000643183.1:ENST00000528700.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	40	2	2.60774	2.749105	2.89047	0.0255874	0.00955699	0.120269	0.0863913
chr9	4801306	4801406	4094949	0	+	0.45	(0.44,0.476]	chr9	373155	77	INTRON	INTRON	RCL1	ENSG00000120158.12	ENST00000381750.9:ENST00000381732.3:ENST00000442869.5:ENST00000473230.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	40	2	2.60774	2.749105	2.89047	0.0255874	0.00955699	0.120269	0.0863913
chr10	103180484	103180584	4683354	0	-	0.45	(0.44,0.476]	chr10	432414	37	INTRON	INTRON	NT5C2	ENSG00000076685.19	ENST00000675164.1:ENST00000343289.9:ENST00000404739.8:ENST00000675020.1:ENST00000674860.1:ENST00000676449.1:ENST00000676428.1:ENST00000674728.1:ENST00000675811.1:ENST00000369857.9:ENST00000675436.1:ENST00000674696.1:ENST00000675326.1:ENST00000675645.1:ENST00000470299.2:ENST00000452156.5:ENST00000461461.5:ENST00000467380.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	55	2	1.9039	2.749035	3.59417	0.0501498	5.78231e-4	0.156383	0.0218253
chr8	140915716	140915816	4079216	0	-	0.43	(0.408,0.44]	chr8	370549	57	INTRON	INTRON	PTK2	ENSG00000169398.20	ENST00000696786.1:ENST00000522684.5:ENST00000395218.3:ENST00000521059.5:ENST00000517887.5:ENST00000519993.5:ENST00000340930.7:ENST00000519419.5:ENST00000524357.5:ENST00000521791.5:ENST00000523067.5:ENST00000520828.5:ENST00000520475.5:ENST00000519881.5:ENST00000520892.5:ENST00000523803.5:ENST00000521907.5:ENST00000517453.5:ENST00000520045.5:ENST00000521395.5:ENST00000523675.1:ENST00000521332.5:ENST00000524040.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	54	2	2.39162	2.749015	3.10641	0.0105837	0.00555646	0.0911864	0.0648867
chr12	124779385	124779485	5445720	0	-	0.6	(0.57,1]	chr12	521214	4	INTRON	INTRON	SCARB1	ENSG00000073060.17	ENST00000339570.9:ENST00000261693.11:ENST00000679605.1:ENST00000681686.1:ENST00000680926.1:ENST00000680556.1:ENST00000680982.1:ENST00000680596.1:ENST00000681555.1:ENST00000681788.1:ENST00000415380.6:ENST00000681117.1:ENST00000681499.1:ENST00000545305.1:ENST00000538291.5:ENST00000546215.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	26	215	2	2.66153	2.74901	2.83649	4.86692e-6	2.16128e-7	0.00163146	2.21108e-4
chr1	220045942	220046042	639188	0	-	0.41	(0.408,0.44]	chr1	75334	2	SS5_PROX	SS5_PROX:INTRON	EPRS1	ENSG00000136628.18	ENST00000366923.8:ENST00000609181.5:ENST00000477030.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	57	2	2.51492	2.74876	2.9826	0.0329839	9.23082e-4	0.133816	0.0278392
chr1	51515699	51515799	454322	0	-	0.37	(0.35,0.378]	chr1	54447	340	INTRON	INTRON	EPS15	ENSG00000085832.17	ENST00000371733.8:ENST00000371730.6:ENST00000371727.5:ENST00000471391.1:ENST00000465467.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	70	2	2.24196	2.7487250000000003	3.25549	0.00744693	0.00363602	0.0772645	0.0535085
chr21	6335202	6335301	7364927	0	+	0.454545	(0.44,0.476]	chr21	751669	52	INTRON	INTRON	ENSG00000278903	ENSG00000278903.4	ENST00000688458.1:ENST00000689306.1:ENST00000624576.3:ENST00000623738.3:ENST00000692237.1:ENST00000624165.1	lncRNA	lncRNA	lncRNA	lncRNA	14	234	2	2.67014	2.74872	2.8273	7.78018e-5	3.98788e-5	0.00787736	0.00512679
chr1	235117263	235117362	661718	0	-	0.494949	(0.476,0.515]	chr1	78322	30	INTRON	INTRON	TOMM20	ENSG00000173726.11	ENST00000366607.5:ENST00000467767.5:ENST00000473132.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	64	2	2.25138	2.74867	3.24596	0.00692374	0.00322919	0.0753208	0.0507087
chr1	28937559	28937659	59186	0	+	0.49	(0.476,0.515]	chr1	7621	224	INTRON	INTRON	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000647918.1:ENST00000646800.1:ENST00000644342.1:ENST00000646189.1:ENST00000482464.6:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000646260.1:ENST00000373798.5:ENST00000644600.1:ENST00000649674.1:ENST00000643173.1:ENST00000343067.9:ENST00000644780.1:ENST00000650265.1:ENST00000648181.1:ENST00000643604.1:ENST00000648891.1:ENST00000373797.2:ENST00000349460.9:ENST00000645184.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	40	2	2.48527	2.74862	3.01197	0.03496	0.00633162	0.13747500000000001	0.0722266
chr1	184952203	184952303	602830	0	-	0.48	(0.476,0.515]	chr1	71774	525	INTRON	INTRON	NIBAN1	ENSG00000135842.17	ENST00000367511.4	protein_coding	protein_coding	protein_coding	protein_coding	2	40	2	2.48527	2.74862	3.01197	0.03496	0.00633162	0.13747500000000001	0.0722266
chr4	55398542	55398637	1960614	0	+	0.389474	(0.378,0.408]	chr4	196542	13	INTRON	INTRON	TMEM165	ENSG00000134851.13	ENST00000381334.10:ENST00000506198.5:ENST00000508404.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	15	141	2	1.34238	2.7486049999999995	4.15483	0.0179251	6.54278e-5	0.114261	0.00715707
chr12	111578568	111578668	5413025	0	-	0.3	(0.28,0.32]	chr12	516941	138	INTRON	INTRON	ATXN2	ENSG00000204842.18	ENST00000642389.2:ENST00000608853.5:ENST00000672613.1:ENST00000673436.1:ENST00000643669.2:ENST00000616825.4:ENST00000389153.10:ENST00000550104.5:ENST00000483311.6:ENST00000672335.1:ENST00000673557.1:ENST00000673283.1:ENST00000673449.1:ENST00000535949.5:ENST00000542287.6:ENST00000644883.1:ENST00000647305.1:ENST00000671792.1:ENST00000392645.6:ENST00000672105.1:ENST00000549455.1:ENST00000548492.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	69	2	1.91611	2.748555	3.581	0.0539102	8.63544e-4	0.164153	0.0266494
chr2	28791286	28791384	725052	0	+	0.408163	(0.378,0.408]	chr2	83757	21	INTRON	INTRON	PPP1CB	ENSG00000213639.10	ENST00000358506.6:ENST00000296122.10:ENST00000395366.3	protein_coding	protein_coding	protein_coding	protein_coding	6	86	2	2.13711	2.748545	3.35998	0.00329758	0.00230615	0.0527031	0.0428247
chr11	66619412	66619504	4810826	0	+	0.391304	(0.378,0.408]	chr11	447852	5	EXON_LNCRNA	EXON_LNCRNA:INTRON	RBM14-RBM4:RBM14	ENSG00000248643.5:ENSG00000239306.5	ENST00000412278.2:ENST00000393979.3:ENST00000511114.1:ENST00000310137.5:ENST00000409372.1:ENST00000421355.1:ENST00000443702.1:ENST00000500635.2:ENST00000409738.4:ENST00000461478.1:ENST00000496694.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	100	2	1.58835	2.74849	3.90863	0.0172286	2.19981e-4	0.111597	0.0135522
chr17	81919155	81919254	6850460	0	-	0.515152	(0.476,0.515]	chr17	678519	10	UTR3	UTR3:EXON_MRNA:INTRON	SIRT7:MAFG	ENSG00000187531.14:ENSG00000197063.11	ENST00000572902.5:ENST00000357736.9	protein_coding	protein_coding	protein_coding	protein_coding	7	119	2	2.51682	2.7483649999999997	2.97991	9.59562e-4	3.10641e-4	0.0284801	0.0162055
chr7	141742977	141743060	3440146	0	+	0.506024	(0.476,0.515]	chr7	320681	4	INTRON	INTRON	SSBP1	ENSG00000106028.11	ENST00000612337.4:ENST00000265304.11:ENST00000498107.5:ENST00000489378.5:ENST00000469123.5:ENST00000467681.5:ENST00000465582.5:ENST00000463093.5:ENST00000465167.1:ENST00000484178.5:ENST00000481508.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	40	2	2.73205	2.7483250000000004	2.7646	0.0162075	0.0159328	0.109464	0.101453
chr9	124759827	124759927	4349101	0	-	0.5	(0.476,0.515]	chr9	399261	261	INTRON	INTRON	NR6A1	ENSG00000148200.17	ENST00000487099.7:ENST00000373584.7:ENST00000416460.6:ENST00000344523.8	protein_coding	protein_coding	protein_coding	protein_coding	2	40	2	2.73205	2.7483250000000004	2.7646	0.0162075	0.0159328	0.109464	0.101453
chrX	138932331	138932431	7900886	0	-	0.49	(0.476,0.515]	chrX	804239	673	INTRON	INTRON	FGF13	ENSG00000129682.16	ENST00000441825.8:ENST00000626909.2:ENST00000436198.5:ENST00000455663.5:ENST00000448673.1:ENST00000421460.1	protein_coding	protein_coding	protein_coding	protein_coding	2	40	2	2.73205	2.7483250000000004	2.7646	0.0162075	0.0159328	0.109464	0.101453
chr3	123956583	123956661	1804129	0	-	0.384615	(0.378,0.408]	chr3	181275	3	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CCDC14	ENSG00000175455.16	ENST00000463996.1:ENST00000409697.8:ENST00000488653.6:ENST00000485727.5:ENST00000495381.5:ENST00000409657.5:ENST00000489746.5:ENST00000433542.7:ENST00000310351.8:ENST00000483247.1:ENST00000435910.5:ENST00000477268.5:ENST00000438440.2:ENST00000417438.1:ENST00000478956.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	85	2	1.98727	2.74817	3.50907	0.00639052	0.00127828	0.0726555	0.0326395
chr12	116208460	116208560	5424856	0	-	0.38	(0.378,0.408]	chr12	518271	273	INTRON	INTRON	MED13L	ENSG00000123066.9	ENST00000281928.9:ENST00000650226.1:ENST00000548743.2:ENST00000647567.1:ENST00000551197.2	protein_coding	protein_coding	protein_coding	protein_coding	6	85	2	1.82004	2.748065	3.67609	0.012605	6.32264e-4	0.0980801	0.0231174
chr10	68961488	68961581	4443542	0	+	0.311828	(0.28,0.32]	chr10	409833	9	INTRON	INTRON	DDX21	ENSG00000165732.14	ENST00000685106.1:ENST00000687162.1:ENST00000684824.1:ENST00000354185.9:ENST00000686528.1:ENST00000690650.1:ENST00000690316.1:ENST00000620315.2:ENST00000685513.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	76	2	2.67453	2.74802	2.82151	0.021289	0.00341865	0.123318	0.0517761
chr4	82877201	82877296	2179961	0	-	0.336842	(0.32,0.35]	chr4	214381	10	INTRON	INTRON	SEC31A	ENSG00000138674.17	ENST00000395310.7:ENST00000513858.5:ENST00000348405.8:ENST00000448323.5:ENST00000311785.11:ENST00000509142.5:ENST00000443462.6:ENST00000500777.6:ENST00000505472.5:ENST00000355196.6:ENST00000508502.5:ENST00000505984.5:ENST00000508479.5:ENST00000436790.6:ENST00000503058.5:ENST00000507816.5:ENST00000514326.5:ENST00000513323.5:ENST00000511975.5:ENST00000507340.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	104	2	1.71888	2.747985	3.77709	0.014315	5.24715e-4	0.104106	0.0210958
chr3	177140132	177140232	1871872	0	-	0.53	(0.515,0.57]	chr3	187422	40	INTRON	INTRON	TBL1XR1	ENSG00000177565.18	ENST00000457928.7:ENST00000430069.5:ENST00000673974.1:ENST00000352800.10:ENST00000422442.6:ENST00000428970.5:ENST00000424913.5:ENST00000437738.5:ENST00000431421.5:ENST00000635794.1:ENST00000630796.2:ENST00000450267.5:ENST00000630833.2:ENST00000431674.5:ENST00000422066.5:ENST00000443315.5:ENST00000627825.2:ENST00000427349.5:ENST00000413084.5:ENST00000637137.1:ENST00000491623.2:ENST00000637544.1:ENST00000636187.1:ENST00000636912.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	62	2	2.48902	2.7479750000000003	3.00693	0.00760558	7.26845e-4	0.0749571	0.0245647
chr7	139089023	139089123	3656212	0	-	0.47	(0.44,0.476]	chr7	339443	46	INTRON	INTRON	ZC3HAV1	ENSG00000105939.14	ENST00000242351.10:ENST00000464606.5:ENST00000680309.1:ENST00000471652.1	protein_coding	protein_coding	protein_coding	protein_coding	3	54	2	2.69297	2.74786	2.80275	0.0146513	0.00333494	0.0982604	0.0528877
chr17	62040189	62040289	6810629	0	-	0.28	[0,0.28]	chr17	672946	42	INTRON	INTRON	MED13	ENSG00000108510.10	ENST00000397786.7	protein_coding	protein_coding	protein_coding	protein_coding	3	77	2	2.5957	2.74776	2.89982	0.0158893	0.00656974	0.101453	0.0736092
chr6	85633377	85633477	3151351	0	-	0.49	(0.476,0.515]	chr6	293889	89	INTRON	INTRON	ENSG00000271793:SYNCRIP	ENSG00000271793.2:ENSG00000135316.19	ENST00000682083.1:ENST00000683074.1:ENST00000681965.1:ENST00000682504.1:ENST00000682106.1:ENST00000683364.1:ENST00000683436.1:ENST00000684220.1:ENST00000683909.1:ENST00000684462.1:ENST00000616122.5:ENST00000678528.1:ENST00000676637.1:ENST00000677771.1:ENST00000355238.11:ENST00000678878.1:ENST00000677481.1:ENST00000677646.1:ENST00000676630.1:ENST00000678618.1:ENST00000676542.1:ENST00000677059.1:ENST00000444272.2:ENST00000678899.1:ENST00000369622.8:ENST00000678355.1:ENST00000676688.1:ENST00000677514.1:ENST00000678816.1:ENST00000678930.1:ENST00000678589.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	106	2	2.55884	2.7477549999999997	2.93667	0.00186081	3.86734e-4	0.039946	0.0182867
chr5	157854930	157855030	2758613	0	-	0.47	(0.44,0.476]	chr5	260304	370	INTRON	INTRON	CLINT1	ENSG00000113282.14	ENST00000523094.5:ENST00000411809.7:ENST00000530742.5:ENST00000523908.5	protein_coding	protein_coding	protein_coding	protein_coding	4	65	2	1.85904	2.74771	3.63638	0.029889	4.74104e-4	0.129138	0.0196816
chr12	121798005	121798102	5439450	0	-	0.597938	(0.57,1]	chr12	520128	14	INTRON	INTRON	RHOF:LINC01089	ENSG00000139725.8:ENSG00000212694.8	ENST00000546227.5:ENST00000541657.5:ENST00000545544.1:ENST00000429892.5:ENST00000542933.5:ENST00000537157.5:ENST00000428029.6:ENST00000541694.5:ENST00000543167.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA:processed_transcript	4	35	2	2.09207	2.7477	3.40333	0.0121228	9.20604e-4	0.090965	0.0278392
chr17	31951776	31951876	6595825	0	+	0.48	(0.476,0.515]	chr17	641554	37	INTRON	INTRON	SUZ12	ENSG00000178691.11	ENST00000322652.10:ENST00000580398.1	protein_coding	protein_coding	protein_coding	protein_coding	7	118	2	2.69681	2.747685	2.79856	7.60949e-4	3.73388e-4	0.0252625	0.0174227
chr5	154222177	154222277	2524096	0	+	0.26	[0,0.28]	chr5	241463	18	INTRON	INTRON	GALNT10	ENSG00000164574.16	ENST00000425427.6:ENST00000297107.11:ENST00000520647.5:ENST00000377661.2:ENST00000521781.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	77	2	2.41169	2.7476450000000003	3.0836	0.0122872	0.00940284	0.0970106	0.0817766
chr1	77750253	77750353	494056	0	-	0.53	(0.515,0.57]	chr1	58469	33	INTRON	INTRON	USP33	ENSG00000077254.14	ENST00000370794.7:ENST00000370793.5:ENST00000370792.7:ENST00000524536.5:ENST00000525113.5:ENST00000528150.1:ENST00000530709.5:ENST00000524778.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	47	2	2.1885	2.747575	3.30665	0.0202537	0.00213226	0.121364	0.041756
chr10	21590040	21590140	4404975	0	+	0.45	(0.44,0.476]	chr10	406459	33	INTRON	INTRON	MLLT10	ENSG00000078403.17	ENST00000651097.1:ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000650772.1:ENST00000651298.1:ENST00000495130.5:ENST00000377059.7:ENST00000476557.5:ENST00000462999.5:ENST00000430455.2:ENST00000479634.1:ENST00000480415.6:ENST00000652258.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	40	2	2.5364	2.7475	2.9586	0.0309324	0.00758318	0.13151	0.0773151
chr17	73219007	73219106	6835083	0	-	0.454545	(0.44,0.476]	chr17	675246	59	INTRON	INTRON	FAM104A	ENSG00000133193.13	ENST00000403627.7:ENST00000405159.8:ENST00000583178.5:ENST00000580032.1:ENST00000581110.1:ENST00000579872.1:ENST00000583024.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	40	2	2.5364	2.7475	2.9586	0.0309324	0.00758318	0.13151	0.0773151
chr17	78693574	78693671	6844930	0	-	0.463918	(0.44,0.476]	chr17	677272	7	INTRON	INTRON	CYTH1	ENSG00000108669.17	ENST00000589296.5:ENST00000361101.8:ENST00000446868.8:ENST00000591455.5:ENST00000589297.5:ENST00000585509.5:ENST00000591574.5:ENST00000590775.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	40	2	2.5364	2.7475	2.9586	0.0309324	0.00758318	0.13151	0.0773151
chrX	74221618	74221717	7840887	0	-	0.464646	(0.44,0.476]	chrX	799703	25	INTRON	INTRON	FTX	ENSG00000230590.12	ENST00000603672.5:ENST00000430772.6:ENST00000602776.6:ENST00000638681.1:ENST00000652319.1:ENST00000661133.1:ENST00000652071.1:ENST00000602812.6:ENST00000651703.1:ENST00000653018.1:ENST00000658448.1:ENST00000662240.1:ENST00000652527.1:ENST00000651451.1:ENST00000657611.1:ENST00000660481.1:ENST00000659574.1:ENST00000661084.1:ENST00000662494.1:ENST00000670936.1:ENST00000602420.6:ENST00000658203.1:ENST00000638985.1:ENST00000691187.1:ENST00000603037.2:ENST00000641360.1:ENST00000687056.1:ENST00000654870.2:ENST00000652540.1:ENST00000652331.2:ENST00000652013.1:ENST00000669263.1:ENST00000657070.1:ENST00000665069.1:ENST00000651936.1:ENST00000652496.1:ENST00000653874.2:ENST00000661335.1:ENST00000664123.1:ENST00000658439.1:ENST00000666535.1:ENST00000652970.1:ENST00000423992.3:ENST00000665313.2:ENST00000651140.1:ENST00000660100.1:ENST00000693483.1	lncRNA	lncRNA	lncRNA	lncRNA	2	40	2	2.5364	2.7475	2.9586	0.0309324	0.00758318	0.13151	0.0773151
chr1	28999910	29000010	59815	0	+	0.47	(0.44,0.476]	chr1	7649	22	INTRON	INTRON	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000647918.1:ENST00000646800.1:ENST00000644342.1:ENST00000646189.1:ENST00000482464.6:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000646260.1:ENST00000373798.5:ENST00000644600.1:ENST00000649674.1:ENST00000643173.1:ENST00000343067.9:ENST00000644780.1:ENST00000650265.1:ENST00000648181.1:ENST00000643604.1:ENST00000648891.1:ENST00000373797.2:ENST00000349460.9:ENST00000645184.1:ENST00000645111.1:ENST00000643302.1:ENST00000645999.1:ENST00000642643.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	73	2	2.64669	2.747345	2.848	0.0040295	0.00215274	0.0578376	0.0417866
chr1	224189854	224189947	321740	0	+	0.451613	(0.44,0.476]	chr1	37037	4	CDS	CDS:EXON_MRNA:EXON_LNCRNA	DEGS1	ENSG00000143753.13	ENST00000415210.5:ENST00000323699.9:ENST00000391877.3:ENST00000465848.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	40	2	2.67572	2.7473400000000003	2.81896	0.0212064	0.0120766	0.113017	0.0962311
chr13	95793602	95793701	5518373	0	+	0.444444	(0.44,0.476]	chr13	527702	27	UTR3	UTR3:EXON_MRNA	DNAJC3	ENSG00000102580.15	ENST00000602402.6	protein_coding	protein_coding	protein_coding	protein_coding	2	40	2	2.67572	2.7473400000000003	2.81896	0.0212064	0.0120766	0.113017	0.0962311
chr17	40410016	40410115	6768291	0	-	0.494949	(0.476,0.515]	chr17	665968	10	INTRON	INTRON	TOP2A	ENSG00000131747.15	ENST00000423485.6	protein_coding	protein_coding	protein_coding	protein_coding	12	178	2	2.45216	2.747305	3.04245	2.24944e-4	1.17982e-4	0.013767	0.00930884
chr20	58430533	58430633	7289959	0	+	0.46	(0.44,0.476]	chr20	741674	118	INTRON	INTRON	VAPB	ENSG00000124164.16	ENST00000475243.6:ENST00000395802.7:ENST00000520497.1:ENST00000265619.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	54	2	2.08277	2.747265	3.41176	0.0309998	0.00130987	0.13151	0.0333932
chr21	39290418	39290518	7465307	0	-	0.45	(0.44,0.476]	chr21	760548	98	INTRON	INTRON	BRWD1	ENSG00000185658.14	ENST00000333229.6:ENST00000342449.8:ENST00000380800.7	protein_coding	protein_coding	protein_coding	protein_coding	3	54	2	2.08277	2.747265	3.41176	0.0309998	0.00130987	0.13151	0.0333932
chr6	154768193	154768293	3002165	0	+	0.42	(0.408,0.44]	chr6	280737	258	INTRON	INTRON	SCAF8	ENSG00000213079.10	ENST00000367186.7:ENST00000417268.3:ENST00000461219.5:ENST00000367178.8:ENST00000464628.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	76	2	2.38802	2.7472149999999997	3.10641	0.00555646	0.00178825	0.0648867	0.0392749
chr17	82914939	82915038	6695880	0	+	0.383838	(0.378,0.408]	chr17	655036	9	INTRON	INTRON	TBCD	ENSG00000141556.22	ENST00000682479.1:ENST00000682722.1:ENST00000684464.1:ENST00000684544.1:ENST00000681983.1:ENST00000684361.1:ENST00000683184.1:ENST00000683282.1:ENST00000684408.1:ENST00000355528.9:ENST00000683444.1:ENST00000684776.1:ENST00000683041.1:ENST00000684760.1:ENST00000684349.1:ENST00000682213.1:ENST00000539345.6:ENST00000684000.1:ENST00000684188.1:ENST00000684429.1:ENST00000682610.1:ENST00000683821.1:ENST00000682654.1:ENST00000576160.6:ENST00000571712.5:ENST00000576996.5:ENST00000683584.1:ENST00000682099.1:ENST00000684559.1:ENST00000576760.5:ENST00000683839.1:ENST00000574975.5:ENST00000572953.5:ENST00000571796.5:ENST00000682315.1:ENST00000574422.1:ENST00000576677.6:ENST00000571618.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	103	2	2.59919	2.747185	2.89518	0.00190046	6.41208e-4	0.0393643	0.0228915
chr9	137805925	137806023	4225397	0	+	0.530612	(0.515,0.57]	chr9	388373	22	INTRON	INTRON	EHMT1	ENSG00000181090.21	ENST00000460843.6:ENST00000636027.1:ENST00000637161.1:ENST00000637261.1:ENST00000462942.3:ENST00000637891.1:ENST00000637949.1:ENST00000486164.5:ENST00000488242.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	74	2	2.53705	2.7471550000000002	2.9572600000000002	0.00186194	0.00108918	0.039946	0.0303873
chr10	50099379	50099477	4433695	0	+	0.540816	(0.515,0.57]	chr10	408887	12	INTRON	INTRON	WASHC2A	ENSG00000099290.17	ENST00000611324.4:ENST00000351071.11:ENST00000314664.12:ENST00000434114.6:ENST00000282633.10:ENST00000399339.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	35	2	2.43589	2.74714	3.05839	0.0370871	0.00485936	0.139194	0.0640618
chr11	77717012	77717111	4994931	0	-	0.565657	(0.515,0.57]	chr11	472017	136	INTRON	INTRON	RSF1	ENSG00000048649.14	ENST00000308488.11:ENST00000526324.5:ENST00000528095.5:ENST00000534794.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	35	2	2.43589	2.74714	3.05839	0.0370871	0.00485936	0.139194	0.0640618
chr15	42555217	42555316	6010181	0	+	0.555556	(0.515,0.57]	chr15	572205	59	INTRON	INTRON	HAUS2	ENSG00000137814.12	ENST00000568876.5:ENST00000567640.5:ENST00000568846.6:ENST00000260372.8:ENST00000391623.8:ENST00000563479.5:ENST00000562398.5:ENST00000564279.5:ENST00000570178.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	35	2	2.43589	2.74714	3.05839	0.0370871	0.00485936	0.139194	0.0640618
chr22	20480451	20480550	7557367	0	-	0.525253	(0.515,0.57]	chr22	772790	53	INTRON	INTRON	KLHL22	ENSG00000099910.17	ENST00000328879.9:ENST00000479601.5:ENST00000451553.1:ENST00000444967.5:ENST00000458248.5:ENST00000443285.5:ENST00000494929.5:ENST00000431430.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	35	2	2.43589	2.74714	3.05839	0.0370871	0.00485936	0.139194	0.0640618
chr22	36283361	36283438	7584349	0	-	0.519481	(0.515,0.57]	chr22	776014	2	INTRON	INTRON	MYH9	ENSG00000100345.23	ENST00000216181.11:ENST00000685801.1:ENST00000691109.1:ENST00000685708.1:ENST00000690244.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	35	2	2.43589	2.74714	3.05839	0.0370871	0.00485936	0.139194	0.0640618
chr9	128126650	128126748	4357498	0	-	0.540816	(0.515,0.57]	chr9	400213	5	UTR5	UTR5:EXON_MRNA:SS3_PROX:INTRON	PTGES2	ENSG00000148334.16	ENST00000338961.11:ENST00000277462.9:ENST00000617202.4:ENST00000678916.1:ENST00000678174.1:ENST00000679345.1:ENST00000677980.1:ENST00000677651.1:ENST00000676562.1:ENST00000476655.6:ENST00000493205.6:ENST00000677691.1:ENST00000497109.6:ENST00000496594.5:ENST00000483625.6:ENST00000487063.5:ENST00000474124.6:ENST00000449878.1:ENST00000476748.5:ENST00000485510.5:ENST00000485237.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	35	2	2.43589	2.74714	3.05839	0.0370871	0.00485936	0.139194	0.0640618
chr7	64531414	64531513	3537002	0	-	0.525253	(0.515,0.57]	chr7	329904	45	INTRON	INTRON	ZNF680	ENSG00000173041.12	ENST00000309683.11:ENST00000476563.1:ENST00000470847.1:ENST00000447137.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	64	2	1.79385	2.7470749999999997	3.7003	0.0201222	3.73715e-4	0.121243	0.0179087
chr5	37288730	37288829	2601900	0	-	0.454545	(0.44,0.476]	chr5	247329	7	UTR3	UTR3:EXON_MRNA	NUP155	ENSG00000113569.16	ENST00000231498.8	protein_coding	protein_coding	protein_coding	protein_coding	10	157	2	2.22272	2.7470549999999996	3.27139	0.00125815	4.01351e-5	0.0323721	0.00513517
chr15	82365165	82365265	6075632	0	+	0.36	(0.35,0.378]	chr15	578727	94	INTRON	INTRON	UBE2Q2P2	ENSG00000259429.5	ENST00000618775.4	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	4	79	2	2.4077	2.747005	3.08631	0.0122026	6.13845e-4	0.0910127	0.0223951
chr2	96621057	96621156	1181018	0	-	0.414141	(0.408,0.44]	chr2	126496	9	INTRON	INTRON	KANSL3	ENSG00000114982.19	ENST00000354204.10:ENST00000431828.6:ENST00000487070.5:ENST00000447759.5:ENST00000420155.5:ENST00000670907.1:ENST00000666923.1:ENST00000597150.5:ENST00000444759.5:ENST00000452268.5:ENST00000425656.5:ENST00000448075.1:ENST00000451819.5:ENST00000416138.1:ENST00000418735.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	87	2	2.57365	2.7469900000000003	2.92033	0.00172241	0.00162151	0.0383099	0.0367655
chr1	61107471	61107571	127642	0	+	0.25	[0,0.28]	chr1	14770	189	EXON_MRNA	EXON_MRNA:INTRON	NFIA	ENSG00000162599.17	ENST00000371191.5:ENST00000664495.1:ENST00000476646.5:ENST00000407417.7:ENST00000479364.1:ENST00000371189.8:ENST00000670151.1:ENST00000664149.1:ENST00000662015.1:ENST00000403491.8:ENST00000371187.7:ENST00000485903.6:ENST00000371185.6:ENST00000371184.6:ENST00000603233.2:ENST00000496712.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	94	2	1.99345	2.746885	3.50032	0.0211881	0.00245166	0.123133	0.0446188
chr11	66621634	66621732	4810849	0	+	0.459184	(0.44,0.476]	chr11	447861	3	INTRON	INTRON	RBM14-RBM4:RBM14	ENSG00000248643.5:ENSG00000239306.5	ENST00000412278.2:ENST00000393979.3:ENST00000511114.1:ENST00000310137.5:ENST00000409372.1:ENST00000421355.1:ENST00000443702.1:ENST00000500635.2:ENST00000409738.4:ENST00000461478.1:ENST00000496694.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	14	211	2	2.16499	2.746855	3.32872	4.9918e-4	1.56632e-5	0.020217099999999998	0.00318411
chr22	21689986	21690080	7482708	0	+	0.606383	(0.57,1]	chr22	763393	13	EXON_MRNA	EXON_MRNA:INTRON	PPIL2	ENSG00000100023.20	ENST00000679795.1:ENST00000679540.1:ENST00000679580.1:ENST00000681286.1:ENST00000680061.1:ENST00000681338.1:ENST00000681956.1:ENST00000679827.1:ENST00000679534.1:ENST00000679479.1:ENST00000680393.1:ENST00000680426.1:ENST00000335025.12:ENST00000498109.2:ENST00000398831.8:ENST00000681394.1:ENST00000679477.1:ENST00000626352.2:ENST00000417788.5:ENST00000681791.1:ENST00000679692.1:ENST00000680962.1:ENST00000679857.1:ENST00000680094.1:ENST00000680434.1:ENST00000680109.1:ENST00000406385.1:ENST00000681137.1:ENST00000680860.1:ENST00000680183.1:ENST00000446951.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	63	2	1.96816	2.746805	3.52545	0.00403305	2.80799e-5	0.0578376	0.00435887
chr10	63174311	63174410	4632440	0	-	0.232323	[0,0.28]	chr10	426101	54	INTRON	INTRON	JMJD1C	ENSG00000171988.20	ENST00000467356.5:ENST00000399262.7:ENST00000402544.5:ENST00000542921.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	57	2	2.44242	2.7467800000000002	3.05114	0.0491024	0.0075493	0.155269	0.0773151
chr6	73520815	73520913	3139455	0	-	0.571429	(0.57,1]	chr6	292540	9	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	EEF1A1	ENSG00000156508.19	ENST00000676547.1:ENST00000309268.11:ENST00000610520.5:ENST00000316292.13:ENST00000356303.7:ENST00000331523.7:ENST00000490569.6:ENST00000678515.1:ENST00000676710.1:ENST00000678702.1:ENST00000677236.1:ENST00000455918.2:ENST00000491404.2:ENST00000488500.2:ENST00000495333.6:ENST00000678703.1:ENST00000677062.1:ENST00000678143.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	16	139	2	2.24324	2.74676	3.25028	2.39401e-4	2.46466e-7	0.0136403	2.64843e-4
chr1	155815037	155815126	564018	0	-	0.516854	(0.515,0.57]	chr1	67340	2	INTRON	INTRON	GON4L	ENSG00000116580.20	ENST00000368331.6:ENST00000615926.4:ENST00000437809.5:ENST00000271883.9:ENST00000361040.9:ENST00000622608.2:ENST00000471341.5:ENST00000467009.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	35	2	2.65834	2.7466749999999998	2.83501	0.0187418	0.0117686	0.117523	0.0894475
chr11	68118092	68118192	4972564	0	-	0.53	(0.515,0.57]	chr11	469439	206	INTRON	INTRON	CHKA	ENSG00000110721.12	ENST00000265689.9:ENST00000356135.9:ENST00000531341.1	protein_coding	protein_coding	protein_coding	protein_coding	2	35	2	2.65834	2.7466749999999998	2.83501	0.0187418	0.0117686	0.117523	0.0894475
chr12	46197130	46197219	5315787	0	-	0.516854	(0.515,0.57]	chr12	505660	5	INTRON	INTRON	SLC38A1	ENSG00000111371.16	ENST00000398637.10:ENST00000439706.5:ENST00000549049.5:ENST00000546893.5:ENST00000552197.5:ENST00000612161.4	protein_coding	protein_coding	protein_coding	protein_coding	2	35	2	2.65834	2.7466749999999998	2.83501	0.0187418	0.0117686	0.117523	0.0894475
chr2	135854190	135854287	1233658	0	-	0.515464	(0.515,0.57]	chr2	131287	9	INTRON	INTRON	MCM6	ENSG00000076003.5	ENST00000264156.3:ENST00000492091.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	35	2	2.65834	2.7466749999999998	2.83501	0.0187418	0.0117686	0.117523	0.0894475
chr4	39455193	39455276	2129309	0	-	0.53012	(0.515,0.57]	chr4	209917	4	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	RPL9	ENSG00000163682.17	ENST00000645496.2:ENST00000295955.14:ENST00000503277.6:ENST00000508595.6:ENST00000449470.6:ENST00000511643.6:ENST00000506581.6:ENST00000644328.1:ENST00000503040.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	35	2	2.65834	2.7466749999999998	2.83501	0.0187418	0.0117686	0.117523	0.0894475
chr22	40812818	40812917	7590314	0	-	0.333333	(0.32,0.35]	chr22	777203	128	INTRON	INTRON	SLC25A17	ENSG00000100372.15	ENST00000544408.5:ENST00000435456.7:ENST00000491545.5:ENST00000263255.10:ENST00000447566.5:ENST00000420970.5:ENST00000430221.5:ENST00000427084.5:ENST00000458600.5:ENST00000443810.5:ENST00000412879.5:ENST00000426396.5:ENST00000434193.5:ENST00000449676.5:ENST00000434185.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	84	2	2.59855	2.74665	2.89475	0.00682041	0.00160352	0.0712518	0.0367961
chr15	20505896	20505993	6118944	0	-	0.56701	(0.515,0.57]	chr15	582493	4	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HERC2P3	ENSG00000180229.12	ENST00000428453.5:ENST00000430598.5:ENST00000414804.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	2	36	2	2.23915	2.746635	3.25412	0.0596178	0.00224554	0.16883600000000001	0.0435144
chr1	3997755	3997855	3827	0	+	0.48	(0.476,0.515]	chr1	788	3	SS3_PROX	SS3_PROX:INTRON	LINC02780	ENSG00000284668.2	ENST00000642026.2:ENST00000641078.1:ENST00000641562.1	lncRNA	lncRNA	lncRNA	lncRNA	4	64	2	2.11679	2.746555	3.37632	0.0115627	0.00195267	0.0962115	0.0400465
chrX	103680334	103680432	7856516	0	-	0.408163	(0.378,0.408]	chrX	801086	13	INTRON	INTRON	MORF4L2	ENSG00000123562.18	ENST00000360458.5:ENST00000441076.7:ENST00000433176.6:ENST00000451301.5:ENST00000434230.5:ENST00000418819.5:ENST00000442614.5:ENST00000492116.5:ENST00000422355.5:ENST00000474653.5:ENST00000498064.1:ENST00000467755.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	152	2	2.05112	2.7465450000000002	3.44197	0.00125609	1.52249e-4	0.03295	0.0112857
chr19	48752089	48752189	7199285	0	-	0.4	(0.378,0.408]	chr19	729878	2	SS5_PROX	SS5_PROX:INTRON	FUT1	ENSG00000174951.12	ENST00000645652.2	protein_coding	protein_coding	protein_coding	protein_coding	9	137	2	1.48613	2.7464	4.00667	0.0288834	2.69583e-6	0.1274	0.00105261
chr14	27620737	27620837	5849059	0	-	0.25	[0,0.28]	chr14	556260	2982	INTRON	INTRON	ENSG00000258932	ENSG00000258932.5	ENST00000553392.5:ENST00000554904.5:ENST00000556890.1:ENST00000555797.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	2	58	2	2.63238	2.7462299999999997	2.86008	0.0259691	0.0177015	0.133676	0.105304
chr8	127956428	127956528	3861683	0	+	0.4	(0.378,0.408]	chr8	355467	131	INTRON	INTRON	PVT1	ENSG00000249859.13	ENST00000667305.1:ENST00000690350.1:ENST00000653522.1:ENST00000661830.1:ENST00000657289.1:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000656880.1:ENST00000660200.1:ENST00000657211.1:ENST00000653845.1:ENST00000517525.2:ENST00000651587.1:ENST00000692980.1:ENST00000666353.1:ENST00000654324.1:ENST00000657693.1:ENST00000666080.1:ENST00000667539.1:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000664293.1:ENST00000662410.1:ENST00000670795.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000654091.1:ENST00000657356.1:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000662061.1:ENST00000656491.1:ENST00000667714.1:ENST00000654105.1:ENST00000665721.1:ENST00000660438.1:ENST00000659326.1:ENST00000666842.1:ENST00000517790.2:ENST00000654369.1:ENST00000664995.1:ENST00000656532.1:ENST00000661988.1:ENST00000670714.1:ENST00000669951.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000656693.1:ENST00000668123.1:ENST00000666776.1:ENST00000664299.1:ENST00000659912.1:ENST00000670532.1:ENST00000660896.1:ENST00000523068.2:ENST00000519481.6:ENST00000669082.1:ENST00000671088.1:ENST00000670204.1:ENST00000652695.1:ENST00000517838.6:ENST00000663461.1:ENST00000513868.6:ENST00000670626.1	lncRNA	lncRNA	lncRNA	lncRNA	3	56	2	2.70298	2.74622	2.78946	0.0158859	0.00325723	0.101453	0.0524329
chr8	26292198	26292284	3716094	0	+	0.395349	(0.378,0.408]	chr8	345344	2	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	PPP2R2A	ENSG00000221914.11	ENST00000380737.8:ENST00000520329.5:ENST00000518254.5:ENST00000524169.5:ENST00000518397.5:ENST00000522535.5:ENST00000665949.1:ENST00000522150.5:ENST00000523473.5:ENST00000521095.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	76	2	2.30628	2.74618	3.18608	0.0163339	3.50013e-4	0.101571	0.0166791
chr10	7308349	7308449	4551906	0	-	0.28	[0,0.28]	chr10	420230	220	INTRON	INTRON	SFMBT2	ENSG00000198879.13	ENST00000397167.6:ENST00000361972.8:ENST00000684547.1:ENST00000683762.1:ENST00000673876.1:ENST00000682896.1:ENST00000379713.8:ENST00000682101.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	94	2	1.94614	2.746175	3.54621	0.0298508	0.00124865	0.129138	0.0328543
chr1	35181606	35181700	420479	0	-	0.329787	(0.32,0.35]	chr1	50650	1	INTRON	INTRON	SFPQ	ENSG00000116560.12	ENST00000470472.5:ENST00000460428.5	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	25	464	2	2.68581	2.746125	2.80644	4.98304e-5	8.26153e-6	0.00611327	0.00207261
chr3	48255119	48255218	1420617	0	+	0.333333	(0.32,0.35]	chr3	149305	71	INTRON	INTRON	ZNF589	ENSG00000164048.14	ENST00000427617.6:ENST00000412564.5:ENST00000354698.8:ENST00000440261.6:ENST00000448461.5:ENST00000457782.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	77	2	1.88255	2.746115	3.60968	0.0269187	0.00105196	0.135288	0.029592
chr4	1996593	1996692	2095926	0	-	0.333333	(0.32,0.35]	chr4	207403	41	INTRON	INTRON	NELFA	ENSG00000185049.16	ENST00000542778.5:ENST00000382882.9:ENST00000333877.8:ENST00000431323.6:ENST00000455762.5:ENST00000421397.5:ENST00000411649.3:ENST00000443203.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	77	2	1.88255	2.746115	3.60968	0.0269187	0.00105196	0.135288	0.029592
chr20	62936295	62936395	7362554	0	-	0.54	(0.515,0.57]	chr20	751216	71	INTRON	INTRON	DIDO1	ENSG00000101191.17	ENST00000266070.8:ENST00000370371.8	protein_coding	protein_coding	protein_coding	protein_coding	14	189	2	2.49607	2.746085	2.9961	6.53563e-5	3.00111e-5	0.00669181	0.00455026
chr19	54204486	54204586	7098869	0	+	0.47	(0.44,0.476]	chr19	711940	25	INTRON	INTRON	RPS9	ENSG00000170889.14	ENST00000484121.5:ENST00000448962.5:ENST00000302907.9:ENST00000626547.2:ENST00000436445.5:ENST00000391752.5:ENST00000402367.5:ENST00000445961.5:ENST00000391751.7:ENST00000495002.5:ENST00000391753.6:ENST00000441429.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	68	2	2.29425	2.74605	3.19785	0.0518406	4.51048e-4	0.176696	0.0196417
chr5	54061064	54061164	2618416	0	-	0.56	(0.515,0.57]	chr5	248837	129	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	64	2	1.86362	2.745915	3.62821	0.0164561	4.12866e-4	0.102235	0.0181365
chr6	31757792	31757885	2843675	0	+	0.44086	(0.44,0.476]	chr6	267823	5	EXON_LNCRNA	EXON_LNCRNA:SS3_PROX:INTRON	MSH5:MSH5-SAPCD1	ENSG00000204410.16:ENSG00000255152.8	ENST00000375755.8:ENST00000375750.9:ENST00000650702.1:ENST00000493662.6:ENST00000375703.7:ENST00000375740.7:ENST00000423982.6:ENST00000463144.5:ENST00000450148.5:ENST00000468602.5:ENST00000468136.5:ENST00000395853.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	20	318	2	2.41148	2.7459100000000003	3.08034	1.09626e-4	3.88014e-6	0.00942675	0.00130504
chr8	41754739	41754838	3938630	0	-	0.575758	(0.57,1]	chr8	361117	203	INTRON	INTRON	ANK1	ENSG00000029534.21	ENST00000347528.8:ENST00000265709.13:ENST00000289734.13	protein_coding	protein_coding	protein_coding	protein_coding	5	46	2	2.60916	2.7458850000000004	2.88261	0.00119055	0.00118949	0.031662	0.0315806
chr5	54095738	54095838	2618764	0	-	0.38	(0.378,0.408]	chr5	248841	198	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	18	306	2	2.38113	2.745835	3.11054	2.76933e-4	2.02066e-6	0.0152764	8.71939e-4
chr6	110880814	110880914	2939004	0	+	0.51	(0.476,0.515]	chr6	276765	48	INTRON	INTRON	AMD1	ENSG00000123505.19	ENST00000451850.6:ENST00000675380.1:ENST00000368882.8:ENST00000672937.2:ENST00000368885.8:ENST00000368877.9:ENST00000368876.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	128	2	2.02951	2.745785	3.46206	0.00244513	1.15043e-4	0.0457273	0.00967384
chr9	128331088	128331184	4204128	0	+	0.4375	(0.408,0.44]	chr9	384235	8	EXON_LNCRNA	EXON_LNCRNA:INTRON	COQ4	ENSG00000167113.11	ENST00000300452.8:ENST00000461102.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	90	2	2.26617	2.745735	3.2253	0.00649402	4.07735e-4	0.0734343	0.0185763
chr5	10361749	10361848	2317727	0	+	0.434343	(0.408,0.44]	chr5	224612	67	INTRON	INTRON	MARCHF6	ENSG00000145495.16	ENST00000274140.10:ENST00000449913.6:ENST00000502795.5:ENST00000511802.5:ENST00000503788.5:ENST00000640713.1:ENST00000510872.5:ENST00000507863.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	13	218	2	2.48866	2.74565	3.00264	4.94802e-4	6.73916e-6	0.0206827	0.00183852
chr17	1423430	1423512	6699640	0	-	0.317073	(0.28,0.32]	chr17	655559	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	CRK	ENSG00000167193.8	ENST00000398970.5:ENST00000300574.3:ENST00000574295.1:ENST00000572145.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	68	2	2.14002	2.7455499999999997	3.35108	0.0304107	0.00221345	0.130461	0.0435144
chr20	35544806	35544905	7262714	0	+	0.464646	(0.44,0.476]	chr20	737988	10	EXON_MRNA	EXON_MRNA:INTRON	ERGIC3	ENSG00000125991.21	ENST00000357394.8:ENST00000447986.5:ENST00000348547.7:ENST00000438317.5:ENST00000279052.10:ENST00000416206.5:ENST00000413587.5:ENST00000461043.6:ENST00000496172.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	107	2	2.2193	2.745345	3.27139	0.00896114	4.01351e-5	0.0800073	0.00513517
chr10	73737518	73737609	4453732	0	+	0.461538	(0.44,0.476]	chr10	411048	4	EXON_LNCRNA	EXON_LNCRNA	GLUD1P3	ENSG00000250959.3	ENST00000690102.1:ENST00000686626.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	4	74	2	2.67169	2.7453250000000002	2.81896	0.0120766	0.00140924	0.0962311	0.0340865
chr2	75911879	75911979	817278	0	+	0.33	(0.32,0.35]	chr2	91391	390	INTRON	INTRON	ENSG00000287474	ENSG00000287474.1	ENST00000670606.1	lncRNA	lncRNA	lncRNA	lncRNA	2	47	2	2.30673	2.7453250000000002	3.18392	0.0584434	0.00379806	0.167723	0.0562562
chr20	56382401	56382484	7358783	0	-	0.349398	(0.32,0.35]	chr20	750352	5	INTRON	INTRON	AURKA	ENSG00000087586.18	ENST00000395914.5:ENST00000395913.7:ENST00000312783.10:ENST00000395911.5:ENST00000395915.8:ENST00000347343.6:ENST00000371356.6:ENST00000395907.5:ENST00000441357.5	protein_coding	protein_coding	protein_coding	protein_coding	2	47	2	2.30673	2.7453250000000002	3.18392	0.0584434	0.00379806	0.167723	0.0562562
chr3	185695614	185695713	1885051	0	-	0.323232	(0.32,0.35]	chr3	188561	20	INTRON	INTRON	IGF2BP2	ENSG00000073792.16	ENST00000382199.7:ENST00000346192.7:ENST00000457616.6:ENST00000421047.3:ENST00000461957.5:ENST00000493302.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	47	2	2.30673	2.7453250000000002	3.18392	0.0584434	0.00379806	0.167723	0.0562562
chr2	161309782	161309881	901121	0	+	0.353535	(0.35,0.378]	chr2	99691	6	INTRON	INTRON	PSMD14	ENSG00000115233.12	ENST00000409682.8:ENST00000478123.5:ENST00000437630.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	80	2	2.11889	2.74532	3.37175	0.00625927	0.00236696	0.0720609	0.043778
chr1	100054185	100054284	171766	0	+	0.40404	(0.378,0.408]	chr1	18603	38	INTRON	INTRON	ENSG00000283761:MFSD14A	ENSG00000283761.1:ENSG00000156875.14	ENST00000638792.1:ENST00000638968.1:ENST00000639040.1:ENST00000639037.1:ENST00000638779.1:ENST00000639171.1:ENST00000640238.1:ENST00000640357.1:ENST00000370152.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	68	2	2.53602	2.745305	2.95459	0.00957623	0.0020933	0.0820838	0.0424943
chr8	129381761	129381860	4059081	0	-	0.414141	(0.408,0.44]	chr8	369559	110	INTRON	INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000657400.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1:ENST00000676273.1:ENST00000667643.1:ENST00000668791.1:ENST00000663716.1:ENST00000663572.1:ENST00000676148.1:ENST00000667962.1:ENST00000674877.1:ENST00000675316.1:ENST00000674656.1:ENST00000446592.7:ENST00000667341.1:ENST00000675186.1:ENST00000652971.1:ENST00000661447.1:ENST00000674863.1:ENST00000675498.1:ENST00000675527.1:ENST00000676108.1:ENST00000657647.1:ENST00000675589.1:ENST00000675913.1:ENST00000675109.1:ENST00000671632.1:ENST00000671311.1:ENST00000676099.1:ENST00000660652.1:ENST00000675522.1:ENST00000675183.1:ENST00000658861.1:ENST00000663991.1:ENST00000674599.1:ENST00000675044.1:ENST00000675435.1:ENST00000674639.1:ENST00000676069.1:ENST00000675532.1:ENST00000674762.1:ENST00000523151.6:ENST00000675948.1:ENST00000665364.1:ENST00000657251.1:ENST00000675166.1:ENST00000674883.1:ENST00000675867.1:ENST00000674580.1:ENST00000675393.1:ENST00000520048.1:ENST00000674906.1:ENST00000676030.1:ENST00000670588.1:ENST00000675072.1:ENST00000664936.1:ENST00000652914.1	lncRNA	lncRNA	lncRNA	lncRNA	4	66	2	1.93002	2.745295	3.56057	0.022095	9.67143e-4	0.123903	0.0282401
chr1	88697718	88697818	155903	0	+	0.34	(0.32,0.35]	chr1	17045	127	INTRON	INTRON	PKN2	ENSG00000065243.20	ENST00000316005.11:ENST00000370521.8:ENST00000370513.9	protein_coding	protein_coding	protein_coding	protein_coding	3	62	2	2.49929	2.7452699999999997	2.99125	0.00958447	0.00776612	0.0820838	0.0787356
chr10	63195747	63195844	4632670	0	-	0.505155	(0.476,0.515]	chr10	426161	10	INTRON	INTRON	JMJD1C	ENSG00000171988.20	ENST00000399262.7:ENST00000402544.5:ENST00000542921.5:ENST00000327520.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	73	2	2.03337	2.74524	3.45711	0.00851546	0.00140905	0.0833995	0.0340865
chr6	36077108	36077207	2853560	0	+	0.363636	(0.35,0.378]	chr6	269663	1	INTRON	INTRON	MAPK14	ENSG00000112062.11	ENST00000229795.7:ENST00000468133.5:ENST00000229794.9:ENST00000310795.8:ENST00000491957.5:ENST00000496250.5:ENST00000474429.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	80	2	2.63527	2.745215	2.85516	0.00443588	0.00239229	0.061054	0.0440612
chr10	59882956	59883055	4623644	0	-	0.30303	(0.28,0.32]	chr10	425682	299	INTRON	INTRON	CCDC6	ENSG00000108091.11	ENST00000263102.7	protein_coding	protein_coding	protein_coding	protein_coding	2	50	2	2.57195	2.7451350000000003	2.91832	0.0331711	0.0102484	0.133994	0.089002
chr2	241296753	241296853	1348380	0	-	0.29	(0.28,0.32]	chr2	141648	238	INTRON	INTRON	HDLBP	ENSG00000115677.18	ENST00000310931.10:ENST00000391976.6:ENST00000428482.5:ENST00000430918.5:ENST00000441124.5:ENST00000413241.5:ENST00000423693.5:ENST00000425989.5:ENST00000420451.5:ENST00000417540.5:ENST00000462130.1:ENST00000496569.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	50	2	2.57195	2.7451350000000003	2.91832	0.0331711	0.0102484	0.133994	0.089002
chr7	121123331	121123431	3394992	0	+	0.3	(0.28,0.32]	chr7	317723	229	INTRON	INTRON	CPED1	ENSG00000106034.18	ENST00000310396.10:ENST00000428526.5:ENST00000450913.6:ENST00000423795.5:ENST00000443817.1	protein_coding	protein_coding	protein_coding	protein_coding	2	50	2	2.57195	2.7451350000000003	2.91832	0.0331711	0.0102484	0.133994	0.089002
chr8	23573610	23573707	3715552	0	+	0.453608	(0.44,0.476]	chr8	345245	19	UTR3	UTR3:EXON_MRNA	SLC25A37	ENSG00000147454.14	ENST00000519973.6	protein_coding	protein_coding	protein_coding	protein_coding	6	107	2	2.53696	2.745	2.95304	0.00204135	3.68938e-4	0.041855	0.0178272
chr5	146204822	146204922	2514126	0	+	0.29	(0.28,0.32]	chr5	240152	6	INTRON	INTRON	ENSG00000275740:RBM27	ENSG00000275740.1:ENSG00000091009.8	ENST00000506502.2:ENST00000265271.7	protein_coding	protein_coding	protein_coding	protein_coding	3	68	2	2.09794	2.74499	3.39204	0.0340483	0.00188405	0.134863	0.0402736
chr3	42612779	42612879	1406093	0	+	0.31	(0.28,0.32]	chr3	147655	17	INTRON	INTRON	NKTR	ENSG00000114857.19	ENST00000468735.6:ENST00000487466.5:ENST00000429888.5:ENST00000232978.13:ENST00000442970.5:ENST00000445842.1:ENST00000478488.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	68	2	2.18092	2.7449250000000003	3.30893	0.0271832	0.00260504	0.123904	0.0470772
chr8	102356974	102357074	4012194	0	-	0.34	(0.32,0.35]	chr8	367218	95	INTRON	INTRON	UBR5	ENSG00000104517.13	ENST00000520539.6:ENST00000220959.8:ENST00000521922.5	protein_coding	protein_coding	protein_coding	protein_coding	13	194	2	2.13806	2.7448949999999996	3.35173	6.14204e-4	3.15473e-4	0.0223951	0.0163709
chr4	25791867	25791966	2119907	0	-	0.484848	(0.476,0.515]	chr4	209416	9	INTRON	INTRON	SEL1L3	ENSG00000091490.11	ENST00000264868.9:ENST00000399878.8:ENST00000502949.5	protein_coding	protein_coding	protein_coding	protein_coding	3	54	2	2.72507	2.744835	2.7646	0.0162075	0.0029369	0.101453	0.0496505
chr3	40536886	40536986	1402590	0	+	0.38	(0.378,0.408]	chr3	147394	39	UTR3	UTR3:EXON_MRNA:INTRON	ZNF621	ENSG00000172888.12	ENST00000310898.5:ENST00000339296.10:ENST00000490457.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	68	2	1.94559	2.744825	3.54406	0.0211434	0.00110718	0.122929	0.0306086
chr16	18147553	18147653	6454109	0	-	0.42	(0.408,0.44]	chr16	621960	1438	INTRON	INTRON	ENSG00000259929:ENSG00000260242	ENSG00000259929.5:ENSG00000260242.1	ENST00000567304.1:ENST00000563866.1	lncRNA	lncRNA	lncRNA	lncRNA	4	74	2	2.60048	2.7448050000000004	2.88913	0.00484324	0.00185044	0.0640618	0.0388609
chr22	19118433	19118533	7551975	0	-	0.53	(0.515,0.57]	chr22	771903	286	INTRON	INTRON	DGCR2	ENSG00000070413.20	ENST00000537045.5:ENST00000545799.5:ENST00000263196.12:ENST00000389262.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	139	2	2.50392	2.7447749999999997	2.98563	1.94962e-4	1.77567e-4	0.0127631	0.0116289
chr1	28574088	28574188	57767	0	+	0.53	(0.515,0.57]	chr1	7500	1	SS3_PROX	SS3_PROX:INTRON	TRNAU1AP	ENSG00000180098.9	ENST00000373830.4:ENST00000480930.5:ENST00000491577.5:ENST00000484775.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	74	2	2.72642	2.74471	2.763	0.00257143	7.31116e-4	0.045134	0.0246497
chr5	54108709	54108809	2618894	0	-	0.33	(0.32,0.35]	chr5	248841	328	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	47	2	2.64129	2.744705	2.84812	0.0222819	0.0147575	0.124303	0.0983813
chr6	10960232	10960327	2812511	0	+	0.347368	(0.32,0.35]	chr6	264690	10	INTRON	INTRON	SYCP2L	ENSG00000153157.13	ENST00000341041.8:ENST00000283141.11:ENST00000543878.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	47	2	2.64129	2.744705	2.84812	0.0222819	0.0147575	0.124303	0.0983813
chr1	246151173	246151273	677144	0	-	0.47	(0.44,0.476]	chr1	79721	549	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000391836.3:ENST00000453676.5:ENST00000462422.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	58	2	2.74372	2.74459	2.74546	0.0153007	0.00326603	0.108569	0.0508595
chr2	85011635	85011735	820668	0	+	0.5	(0.476,0.515]	chr2	91419	390	INTRON	INTRON	KCMF1	ENSG00000176407.18	ENST00000456682.1:ENST00000409785.9:ENST00000428691.5:ENST00000453448.1	protein_coding	protein_coding	protein_coding	protein_coding	2	42	2	2.13854	2.7445649999999997	3.35059	0.0776563	0.00171515	0.196285	0.0381936
chr20	34421235	34421333	7259700	0	+	0.428571	(0.408,0.44]	chr20	737454	8	INTRON	INTRON	ITCH	ENSG00000078747.16	ENST00000374864.10:ENST00000535650.7:ENST00000670516.1:ENST00000665484.1:ENST00000664852.1:ENST00000660337.1:ENST00000665428.1:ENST00000262650.10:ENST00000662871.1:ENST00000665346.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	54	2	2.64829	2.74453	2.84077	0.0132196	0.00400062	0.0940535	0.057767
chr3	98589254	98589354	1755118	0	-	0.43	(0.408,0.44]	chr3	178002	4	SS3_PROX	SS3_PROX:INTRON	CPOX	ENSG00000080819.9	ENST00000647941.2	protein_coding	protein_coding	protein_coding	protein_coding	3	54	2	2.64829	2.74453	2.84077	0.0132196	0.00400062	0.0940535	0.057767
chr20	31694875	31694975	7325092	0	-	0.43	(0.408,0.44]	chr20	745996	99	INTRON	INTRON	BCL2L1	ENSG00000171552.14	ENST00000376055.9:ENST00000376062.6:ENST00000307677.5:ENST00000420488.6:ENST00000439267.2:ENST00000678563.1:ENST00000456404.6:ENST00000676942.1:ENST00000676582.1:ENST00000434194.2:ENST00000677194.1:ENST00000678671.1:ENST00000677494.1:ENST00000422920.2:ENST00000450273.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	75	2	1.81017	2.744515	3.67886	0.0217525	3.86173e-4	0.11491	0.017761
chr3	133661043	133661127	1821768	0	-	0.321429	(0.32,0.35]	chr3	183380	1	CDS_START	CDS_START:CDS:EXON_MRNA	TOPBP1	ENSG00000163781.14	ENST00000260810.10:ENST00000642236.1	protein_coding	protein_coding	protein_coding	protein_coding	3	62	2	2.45306	2.744515	3.03597	0.00916394	0.00832487	0.0855292	0.0774402
chr16	23916140	23916240	6324562	0	+	0.47	(0.44,0.476]	chr16	605701	224	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000498739.1	protein_coding	protein_coding	protein_coding	protein_coding	7	89	2	1.8376	2.744475	3.65135	0.00813403	6.34922e-4	0.0810802	0.023163
chr1	29102735	29102835	60870	0	+	0.4	(0.378,0.408]	chr1	7771	44	INTRON	INTRON	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000373798.5:ENST00000649674.1:ENST00000343067.9:ENST00000349460.9:ENST00000490308.2:ENST00000650132.1:ENST00000649992.1:ENST00000460378.1:ENST00000462032.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	70	2	2.69945	2.7444550000000003	2.78946	0.0158859	9.70462e-4	0.101453	0.0286926
chr2	47424177	47424276	773741	0	+	0.515152	(0.476,0.515]	chr2	87267	74	INTRON	INTRON	MSH2	ENSG00000095002.15	ENST00000543555.6:ENST00000644092.1:ENST00000645339.1:ENST00000646415.1:ENST00000645506.1:ENST00000406134.5:ENST00000233146.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	54	2	2.19809	2.744415	3.29074	0.020317	0.00272563	0.121522	0.0467523
chr14	37091386	37091486	5877201	0	-	0.47	(0.44,0.476]	chr14	558013	2160	INTRON	INTRON	SLC25A21	ENSG00000183032.12	ENST00000331299.6:ENST00000555449.5:ENST00000557611.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	122	2	2.35576	2.7443999999999997	3.13304	0.00208591	1.45293e-4	0.0424672	0.0110154
chr19	58298815	58298915	7107227	0	+	0.38	(0.378,0.408]	chr19	713389	34	UTR3	UTR3:EXON_MRNA:INTRON	ZNF8:ZNF8-ERVK3-1	ENSG00000278129.2:ENSG00000267216.1	ENST00000621650.2:ENST00000591325.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	6	103	2	2.31917	2.744365	3.16956	0.00252588	5.70211e-4	0.0465056	0.0220524
chr2	86152208	86152303	1170715	0	-	0.505263	(0.476,0.515]	chr2	124937	3	INTRON	INTRON	IMMT	ENSG00000132305.22	ENST00000449247.6:ENST00000254636.9:ENST00000410111.8:ENST00000442664.6:ENST00000419070.6:ENST00000409051.6	protein_coding	protein_coding	protein_coding	protein_coding	5	73	2	2.07116	2.74422	3.41728	0.00731321	0.00165726	0.076234	0.0369207
chr7	107896761	107896861	3379670	0	+	0.25	[0,0.28]	chr7	316570	31	INTRON	INTRON	DLD	ENSG00000091140.15	ENST00000417551.5:ENST00000415325.5:ENST00000440410.5:ENST00000437604.6:ENST00000205402.10:ENST00000451081.5:ENST00000450038.5:ENST00000453354.5:ENST00000460577.5:ENST00000494441.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	106	2	2.06779	2.744195	3.4206	0.0096412	0.00322364	0.0870233	0.0507087
chr16	30727315	30727411	6338953	0	+	0.28125	(0.28,0.32]	chr16	607822	12	INTRON	INTRON	SRCAP	ENSG00000080603.17	ENST00000262518.9:ENST00000395059.6	protein_coding	protein_coding	protein_coding	protein_coding	3	68	2	2.70831	2.7441750000000003	2.78004	0.0193244	0.00378444	0.108861	0.0562562
chr19	36545188	36545285	7174615	0	-	0.474227	(0.44,0.476]	chr19	725059	15	UTR3	UTR3:EXON_MRNA:INTRON	ZNF529	ENSG00000186020.13	ENST00000452073.2:ENST00000591340.6:ENST00000590656.1:ENST00000334116.7	protein_coding	protein_coding	protein_coding	protein_coding	7	110	2	1.93083	2.744165	3.5575	0.00932249	4.3292e-5	0.0817766	0.00532052
chr18	13024782	13024881	6876913	0	+	0.535354	(0.515,0.57]	chr18	681391	52	INTRON	INTRON	CEP192	ENSG00000101639.19	ENST00000325971.12:ENST00000506447.5:ENST00000589596.5:ENST00000513432.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	102	2	2.48529	2.7441199999999997	3.00295	9.88223e-4	2.06595e-4	0.0289028	0.0131276
chr21	22284905	22285005	7385217	0	+	0.31	(0.28,0.32]	chr21	752727	717	INTRON	INTRON	ENSG00000226043	ENSG00000226043.2	ENST00000667099.1:ENST00000654607.1:ENST00000444130.1	lncRNA	lncRNA	lncRNA	lncRNA	2	50	2	2.51488	2.744105	2.97333	0.0380957	0.00857834	0.141678	0.083729
chr9	100313075	100313175	4308766	0	-	0.3	(0.28,0.32]	chr9	395838	23	INTRON	INTRON	TEX10	ENSG00000136891.14	ENST00000535814.5:ENST00000374902.9	protein_coding	protein_coding	protein_coding	protein_coding	2	50	2	2.51488	2.744105	2.97333	0.0380957	0.00857834	0.141678	0.083729
chr1	54359214	54359314	463289	0	-	0.36	(0.35,0.378]	chr1	55784	25	INTRON	INTRON	SSBP3	ENSG00000157216.16	ENST00000610401.5:ENST00000357475.9:ENST00000371319.8:ENST00000417664.7:ENST00000533946.6:ENST00000371320.8:ENST00000525990.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	44	2	2.32443	2.74407	3.16371	0.0544216	0.00383956	0.164972	0.0562562
chrX	107161889	107161988	7860047	0	-	0.353535	(0.35,0.378]	chrX	801294	73	INTRON	INTRON	NUP62CL	ENSG00000198088.10	ENST00000372466.8:ENST00000484614.5:ENST00000421752.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	44	2	2.32443	2.74407	3.16371	0.0544216	0.00383956	0.164972	0.0562562
chr9	93538024	93538124	4158918	0	+	0.31	(0.28,0.32]	chr9	379180	53	INTRON	INTRON	FAM120A	ENSG00000048828.17	ENST00000277165.11:ENST00000427765.1	protein_coding	protein_coding	protein_coding	protein_coding	2	50	2	2.62686	2.743995	2.86113	0.0289217	0.0122675	0.1274	0.0969406
chr7	158744037	158744127	3688945	0	-	0.355556	(0.35,0.378]	chr7	342334	5	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	ESYT2	ENSG00000117868.18	ENST00000251527.10:ENST00000275418.13:ENST00000652148.1:ENST00000435514.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	120	2	2.201	2.743875	3.28675	0.00256708	3.6403e-4	0.0466761	0.0176829
chr3	25762886	25762983	1642635	0	-	0.453608	(0.44,0.476]	chr3	168672	8	INTRON	INTRON	NGLY1	ENSG00000151092.18	ENST00000280700.10:ENST00000428257.5:ENST00000675217.1:ENST00000676225.1:ENST00000493324.5:ENST00000396649.7:ENST00000308710.9:ENST00000280699.13:ENST00000674841.1:ENST00000675234.1:ENST00000463611.2:ENST00000417874.6:ENST00000427041.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	64	2	2.22103	2.7438599999999997	3.26669	0.00776319	0.00305435	0.0787356	0.0493883
chr1	1573977	1574077	360314	0	-	0.4	(0.378,0.408]	chr1	41854	1	SS5_PROX	SS5_PROX:INTRON	SSU72	ENSG00000160075.12	ENST00000291386.4:ENST00000378725.3:ENST00000359060.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	11	195	2	2.65411	2.7438450000000003	2.83358	1.78662e-4	1.47271e-4	0.0116621	0.0111067
chr14	21235872	21235972	5834830	0	-	0.43	(0.408,0.44]	chr14	554454	1	SS5_PROX	SS5_PROX:INTRON	HNRNPC	ENSG00000092199.19	ENST00000336053.10:ENST00000553300.6:ENST00000554969.5:ENST00000556142.5:ENST00000554455.5:ENST00000430246.6:ENST00000553753.5:ENST00000555309.5:ENST00000555914.5:ENST00000557442.5:ENST00000556628.5:ENST00000556513.5:ENST00000555883.5:ENST00000557201.5:ENST00000556897.5:ENST00000420743.6:ENST00000554539.5:ENST00000554383.5:ENST00000555215.5:ENST00000555137.5:ENST00000554891.5:ENST00000556226.5:ENST00000555176.5:ENST00000553614.5:ENST00000557336.1:ENST00000557768.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	139	2	2.16538	2.743665	3.32195	8.63582e-4	2.54513e-4	0.0266494	0.0147895
chr6	87696620	87696720	3152865	0	-	0.52	(0.515,0.57]	chr6	294114	145	INTRON	INTRON	AKIRIN2	ENSG00000135334.9	ENST00000257787.6	protein_coding	protein_coding	protein_coding	protein_coding	4	58	2	1.7492	2.743645	3.73809	0.0382504	3.11298e-4	0.15832	0.0162055
chr21	39196069	39196163	7464321	0	-	0.265957	[0,0.28]	chr21	760358	15	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	BRWD1	ENSG00000185658.14	ENST00000333229.6:ENST00000342449.8:ENST00000446924.5:ENST00000380800.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	145	2	2.03217	2.743635	3.4551	0.0146933	1.71783e-4	0.0983813	0.0113605
chr17	65051601	65051701	6818370	0	-	0.36	(0.35,0.378]	chr17	674129	329	INTRON	INTRON	GNA13	ENSG00000120063.10	ENST00000439174.7:ENST00000541118.1	protein_coding	protein_coding	protein_coding	protein_coding	2	44	2	2.6498	2.743445	2.83709	0.0210137	0.01435	0.122348	0.0966737
chr17	66584170	66584270	6665115	0	+	0.37	(0.35,0.378]	chr17	650338	292	INTRON	INTRON	PRKCA	ENSG00000154229.12	ENST00000413366.8:ENST00000578063.5:ENST00000284384.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	58	2	2.49643	2.743435	2.99044	0.00894806	0.00752974	0.0799922	0.0773151
chr4	150998314	150998414	2271602	0	-	0.46	(0.44,0.476]	chr4	220921	689	INTRON	INTRON	LRBA	ENSG00000198589.14	ENST00000357115.9:ENST00000651943.2:ENST00000510413.5:ENST00000651035.1:ENST00000507224.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	64	2	2.26452	2.74322	3.22192	0.00654074	0.00360821	0.0735539	0.0533855
chr7	43672718	43672818	3525810	0	-	0.44	(0.408,0.44]	chr7	328779	66	INTRON	INTRON	COA1	ENSG00000106603.20	ENST00000415076.6:ENST00000446330.6:ENST00000446564.5:ENST00000438444.5:ENST00000223336.11:ENST00000310564.10:ENST00000415798.5:ENST00000431651.5:ENST00000451651.5:ENST00000418140.5:ENST00000448704.5:ENST00000470156.1:ENST00000457939.1:ENST00000420441.1:ENST00000478504.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	114	2	1.9279	2.74321	3.55852	0.00807087	7.50862e-5	0.0806514	0.00777227
chr3	50006112	50006212	1423621	0	+	0.47	(0.44,0.476]	chr3	149994	62	INTRON	INTRON	RBM6	ENSG00000004534.15	ENST00000442092.5:ENST00000443081.5:ENST00000419610.5:ENST00000441115.5:ENST00000422955.5:ENST00000454079.5:ENST00000266022.9:ENST00000425608.5:ENST00000434592.5:ENST00000464013.5:ENST00000483350.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	64	2	2.1762	2.743155	3.31011	0.0092251	0.00259023	0.0855292	0.0452934
chr7	75027470	75027569	3337012	0	+	0.474747	(0.44,0.476]	chr7	310610	29	UTR3	UTR3:EXON_MRNA	CASTOR2	ENSG00000274070.2	ENST00000616305.2	protein_coding	protein_coding	protein_coding	protein_coding	4	64	2	2.1762	2.743155	3.31011	0.0092251	0.00259023	0.0855292	0.0452934
chrX	71285264	71285364	7678014	0	+	0.23	[0,0.28]	chrX	786065	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NONO	ENSG00000147140.17	ENST00000677446.1:ENST00000677274.1:ENST00000535149.5:ENST00000420903.6:ENST00000678335.1:ENST00000678830.1:ENST00000677826.1:ENST00000473525.2:ENST00000678437.1:ENST00000676499.1:ENST00000676495.1:ENST00000678323.1:ENST00000677766.1:ENST00000679267.1:ENST00000373856.8:ENST00000679254.1:ENST00000677879.1:ENST00000677245.1:ENST00000373841.5:ENST00000276079.13:ENST00000679029.1:ENST00000677218.1:ENST00000676797.1:ENST00000678414.1:ENST00000679062.1:ENST00000678660.1:ENST00000677014.1:ENST00000678231.1:ENST00000474431.5:ENST00000678852.1:ENST00000677612.1:ENST00000677977.1:ENST00000471419.7:ENST00000472185.1:ENST00000413858.5:ENST00000486613.6:ENST00000450092.6:ENST00000454976.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	60	2	2.43761	2.74314	3.04867	0.0423864	0.0104221	0.161744	0.085482
chr2	191690365	191690465	960490	0	+	0.32	(0.28,0.32]	chr2	104307	47	UTR3	UTR3:EXON_MRNA	NABP1	ENSG00000173559.15	ENST00000674262.1:ENST00000674360.1:ENST00000674406.1:ENST00000674414.1:ENST00000410026.7:ENST00000674172.1:ENST00000674187.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	71	2	2.56765	2.742985	2.91832	0.0102484	0.00835086	0.089002	0.0774402
chr1	26734289	26734389	51559	0	+	0.34	(0.32,0.35]	chr1	6565	11	INTRON	INTRON	ARID1A	ENSG00000117713.21	ENST00000430799.7:ENST00000324856.13:ENST00000457599.6:ENST00000374152.7:ENST00000636219.1	protein_coding	protein_coding	protein_coding	protein_coding	5	102	2	2.09793	2.7429449999999997	3.38796	0.0156788	1.48523e-4	0.101453	0.0105885
chr8	60858749	60858846	3760740	0	+	0.536082	(0.515,0.57]	chr8	349745	15	INTRON	INTRON	CHD7	ENSG00000171316.13	ENST00000423902.7:ENST00000695853.1:ENST00000524602.5:ENST00000695850.1:ENST00000531695.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	110	2	2.20213	2.742895	3.28366	0.00853365	7.41323e-6	0.0780043	0.00193636
chr18	13024881	13024981	6876914	0	+	0.48	(0.476,0.515]	chr18	681391	53	INTRON	INTRON	CEP192	ENSG00000101639.19	ENST00000325971.12:ENST00000506447.5:ENST00000589596.5:ENST00000513432.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	54	2	2.41121	2.742715	3.07422	0.0110342	0.00506023	0.0873897	0.0646039
chr3	6535524	6535624	1356596	0	+	0.39	(0.378,0.408]	chr3	142508	224	INTRON	INTRON	ENSG00000189229	ENSG00000189229.12	ENST00000660158.1:ENST00000433639.1:ENST00000655754.1:ENST00000653839.1:ENST00000662846.1:ENST00000659876.1:ENST00000414438.2:ENST00000658468.1:ENST00000414603.1:ENST00000669512.1:ENST00000667028.1:ENST00000655541.1:ENST00000668643.1:ENST00000671568.1:ENST00000671036.1:ENST00000669798.1:ENST00000655753.1:ENST00000655856.1:ENST00000658398.1:ENST00000661518.1:ENST00000661279.1:ENST00000655495.1:ENST00000663041.1:ENST00000659827.1:ENST00000667716.1:ENST00000662508.1:ENST00000668416.1:ENST00000658133.1:ENST00000659651.1:ENST00000342990.4:ENST00000660054.1:ENST00000671370.1	lncRNA	lncRNA	lncRNA	lncRNA	6	85	2	1.74732	2.742575	3.73783	0.0166132	4.8181e-4	0.110511	0.0203411
chr8	130006235	130006335	4063830	0	-	0.47	(0.44,0.476]	chr8	369844	349	INTRON	INTRON	CYRIB	ENSG00000153310.21	ENST00000694912.1:ENST00000523288.5:ENST00000519110.5:ENST00000401979.6:ENST00000523509.5:ENST00000517654.5:ENST00000518879.5:ENST00000522702.5:ENST00000521223.5:ENST00000518283.5:ENST00000523993.5:ENST00000519020.5:ENST00000518167.5:ENST00000522361.1:ENST00000523514.1:ENST00000518285.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	54	2	2.02558	2.742575	3.45957	0.0363567	0.00106385	0.138959	0.0300133
chr7	121119242	121119342	3394951	0	+	0.52	(0.515,0.57]	chr7	317723	188	INTRON	INTRON	CPED1	ENSG00000106034.18	ENST00000310396.10:ENST00000428526.5:ENST00000450913.6:ENST00000423795.5:ENST00000443817.1	protein_coding	protein_coding	protein_coding	protein_coding	4	56	2	2.11384	2.742545	3.37125	0.0118599	0.00136343	0.0899583	0.0339121
chr11	482475	482575	4719229	0	+	0.5	(0.476,0.515]	chr11	436026	20	INTRON	INTRON	PTDSS2	ENSG00000174915.12	ENST00000532614.5:ENST00000308020.6:ENST00000531520.5:ENST00000526878.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	103	2	2.67242	2.74228	2.81214	0.00136918	5.41922e-4	0.0336718	0.0211086
chr2	15521246	15521346	1072761	0	-	0.4	(0.378,0.408]	chr2	114441	95	INTRON	INTRON	NBAS	ENSG00000151779.13	ENST00000281513.10	protein_coding	protein_coding	protein_coding	protein_coding	6	86	2	1.48285	2.742275	4.0017	0.044825	7.73853e-5	0.149888	0.00735438
chr18	46092111	46092198	6965436	0	-	0.390805	(0.378,0.408]	chr18	689398	4	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	ATP5F1A	ENSG00000152234.16	ENST00000398752.11:ENST00000282050.6:ENST00000593152.6:ENST00000586592.5:ENST00000590665.5:ENST00000590156.5:ENST00000592364.5:ENST00000589252.5:ENST00000589869.5:ENST00000589611.1:ENST00000590406.5:ENST00000590324.5:ENST00000590448.5:ENST00000592989.1:ENST00000591981.5:ENST00000585650.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	76	2	2.04798	2.742215	3.43645	0.00809949	0.00171162	0.0808864	0.037419
chr16	67056624	67056723	6365820	0	+	0.444444	(0.44,0.476]	chr16	611422	100	INTRON	INTRON	CBFB	ENSG00000067955.15	ENST00000651988.1:ENST00000652360.1:ENST00000561924.6:ENST00000290858.11:ENST00000412916.7:ENST00000564034.6:ENST00000650873.1:ENST00000563939.3:ENST00000565389.1:ENST00000567947.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	40	2	2.74063	2.742175	2.74372	0.0176095	0.0153007	0.108569	0.105143
chrX	124073582	124073680	7717902	0	+	0.469388	(0.44,0.476]	chrX	789609	19	INTRON	INTRON	STAG2	ENSG00000101972.20	ENST00000218089.13:ENST00000687810.1:ENST00000687071.1:ENST00000469481.1:ENST00000371160.5:ENST00000687852.1:ENST00000371145.8:ENST00000692982.1:ENST00000371157.7:ENST00000691035.1:ENST00000686802.1:ENST00000686127.1:ENST00000371144.7:ENST00000693144.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	40	2	2.74063	2.742175	2.74372	0.0176095	0.0153007	0.108569	0.105143
chr6	83192096	83192187	3145877	0	-	0.527473	(0.515,0.57]	chr6	293332	4	INTRON	INTRON	PGM3	ENSG00000013375.16	ENST00000513973.6:ENST00000512866.5:ENST00000650640.1:ENST00000616566.5:ENST00000283977.9:ENST00000651425.1:ENST00000650642.1:ENST00000506587.5:ENST00000509219.2:ENST00000652468.1:ENST00000510258.1:ENST00000505470.5:ENST00000507554.1:ENST00000508748.5:ENST00000503094.1:ENST00000515333.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	56	2	2.45375	2.74206	3.03037	0.00608732	0.00273605	0.0676501	0.0483437
chr12	50417821	50417920	5136505	0	+	0.484848	(0.476,0.515]	chr12	484368	10	INTRON	INTRON	LARP4	ENSG00000161813.23	ENST00000550522.5:ENST00000293618.12:ENST00000429001.7:ENST00000398473.7:ENST00000548174.5:ENST00000548697.5:ENST00000548993.5:ENST00000522085.5:ENST00000518444.5:ENST00000551886.5:ENST00000523389.5:ENST00000518561.5:ENST00000347328.9:ENST00000550260.1:ENST00000517559.5:ENST00000552445.1	protein_coding	protein_coding	protein_coding	protein_coding	3	53	2	2.48551	2.7420150000000003	2.99852	0.0077575	0.00756632	0.0773151	0.0757402
chr12	122876547	122876647	5442381	0	-	0.5	(0.476,0.515]	chr12	520621	56	EXON_MRNA	EXON_MRNA:INTRON	VPS37B:ENSG00000280138	ENSG00000139722.7:ENSG00000280138.1	ENST00000267202.7:ENST00000535765.5:ENST00000371248.3:ENST00000623210.1	protein_coding	protein_coding	protein_coding:TEC	protein_coding:TEC	3	53	2	2.48551	2.7420150000000003	2.99852	0.0077575	0.00756632	0.0773151	0.0757402
chr5	176458399	176458499	2552273	0	+	0.48	(0.476,0.515]	chr5	243670	43	INTRON	INTRON	FAF2	ENSG00000113194.13	ENST00000510730.5:ENST00000261942.7:ENST00000510446.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	53	2	2.43242	2.7419700000000002	3.05152	0.0091895	0.0064848	0.0855292	0.0699952
chr16	58593475	58593574	6496016	0	-	0.515152	(0.476,0.515]	chr16	628630	42	INTRON	INTRON	CNOT1	ENSG00000125107.19	ENST00000317147.10:ENST00000569240.5:ENST00000567188.5:ENST00000441024.6:ENST00000565605.5:ENST00000564557.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	119	2	2.28606	2.741935	3.19781	9.7385e-4	4.3655e-4	0.0287651	0.0191798
chr13	69298347	69298447	5508802	0	+	0.53	(0.515,0.57]	chr13	527078	63	INTRON	INTRON	LINC00383	ENSG00000235221.3	ENST00000657223.1:ENST00000648574.1	lncRNA	lncRNA	lncRNA	lncRNA	3	48	2	2.03361	2.7418750000000003	3.45014	0.0325854	0.00116948	0.145164	0.0312127
chr11	86021176	86021274	5014357	0	-	0.387755	(0.378,0.408]	chr11	472995	59	INTRON	INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000630913.2:ENST00000528398.5:ENST00000356360.9:ENST00000534412.5:ENST00000531771.5:ENST00000531558.1:ENST00000531930.5:ENST00000532041.5:ENST00000525162.5:ENST00000528256.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	144	2	2.25517	2.74186	3.22855	0.00430492	1.59946e-5	0.0577899	0.00301858
chr1	111454556	111454656	184251	0	+	0.55	(0.515,0.57]	chr1	20478	2	SS5_PROX	SS5_PROX:INTRON	ATP5PB	ENSG00000116459.11	ENST00000493119.5:ENST00000369722.8:ENST00000369721.8:ENST00000483994.1:ENST00000468818.1:ENST00000464154.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	101	2	2.60908	2.741785	2.87449	5.10997e-4	4.10541e-4	0.020315	0.0186083
chr12	6969860	6969955	5260992	0	-	0.526316	(0.515,0.57]	chr12	501191	4	EXON_MRNA	EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PHB2	ENSG00000215021.10	ENST00000440277.6:ENST00000678829.1:ENST00000535923.6:ENST00000546111.5:ENST00000676496.1:ENST00000399433.7:ENST00000543465.5:ENST00000677354.1:ENST00000542912.5:ENST00000678983.1:ENST00000678000.1:ENST00000676893.1:ENST00000536316.3:ENST00000545167.5:ENST00000544888.5:ENST00000544134.5:ENST00000546217.1:ENST00000542294.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	46	2	2.39351	2.741765	3.09002	0.0100431	0.00491099	0.0881096	0.0609494
chr16	66733717	66733802	6502053	0	-	0.564706	(0.515,0.57]	chr16	629017	1	SS5_PROX	SS5_PROX:INTRON	DYNC1LI2	ENSG00000135720.13	ENST00000258198.7:ENST00000443351.6:ENST00000565532.5:ENST00000440564.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	46	2	2.39351	2.741765	3.09002	0.0100431	0.00491099	0.0881096	0.0609494
chr9	112068698	112068798	4315701	0	-	0.29	(0.28,0.32]	chr9	396912	53	INTRON	INTRON	SUSD1	ENSG00000106868.17	ENST00000374270.8:ENST00000374263.7:ENST00000355396.7:ENST00000374264.6	protein_coding	protein_coding	protein_coding	protein_coding	4	83	2	2.09145	2.741745	3.39204	0.0172565	0.00188405	0.104099	0.0402736
chr4	143541761	143541857	2055774	0	+	0.322917	(0.32,0.35]	chr4	203898	9	INTRON	INTRON	SMARCA5	ENSG00000153147.6	ENST00000283131.4	protein_coding	protein_coding	protein_coding	protein_coding	3	69	2	2.30673	2.741675	3.1766200000000002	0.0584434	4.35341e-4	0.167723	0.0187673
chr10	45979755	45979854	4430455	0	+	0.222222	[0,0.28]	chr10	408468	39	INTRON	INTRON	TIMM23	ENSG00000265354.4	ENST00000580018.4	protein_coding	protein_coding	protein_coding	protein_coding	2	57	2	2.73384	2.741425	2.74901	0.0246308	0.0188843	0.12011	0.118148
chr7	152213047	152213147	3679028	0	-	0.27	[0,0.28]	chr7	341526	42	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000683200.1:ENST00000682283.1:ENST00000473186.5:ENST00000679882.1:ENST00000680969.1:ENST00000681033.1:ENST00000682176.1:ENST00000679645.1:ENST00000684550.1:ENST00000489110.2:ENST00000681838.1:ENST00000683490.1:ENST00000684623.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	57	2	2.73384	2.741425	2.74901	0.0246308	0.0188843	0.12011	0.118148
chr8	31144023	31144123	3729064	0	+	0.3	(0.28,0.32]	chr8	346675	4	SS5_PROX	SS5_PROX:INTRON	WRN	ENSG00000165392.11	ENST00000650667.1:ENST00000298139.7:ENST00000521620.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	69	2	1.86684	2.74142	3.616	0.0605813	7.42427e-4	0.171122	0.024913
chr3	195394642	195394742	1895431	0	-	0.39	(0.378,0.408]	chr3	189693	21	INTRON	INTRON	ACAP2	ENSG00000114331.16	ENST00000326793.11:ENST00000635383.1:ENST00000480906.5:ENST00000481463.5:ENST00000439666.1:ENST00000447662.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	67	2	2.04622	2.741335	3.43645	0.0149927	0.00171162	0.107704	0.037419
chr6	147205182	147205278	2988715	0	+	0.385417	(0.378,0.408]	chr6	279995	1	INTRON	INTRON	STXBP5	ENSG00000164506.15	ENST00000321680.11:ENST00000367481.7:ENST00000546097.5:ENST00000367480.7	protein_coding	protein_coding	protein_coding	protein_coding	4	67	2	2.04622	2.741335	3.43645	0.0149927	0.00171162	0.107704	0.037419
chr1	27472798	27472898	406591	0	-	0.44	(0.408,0.44]	chr1	48986	435	INTRON	INTRON	WASF2	ENSG00000158195.11	ENST00000618852.5:ENST00000536657.1	protein_coding	protein_coding	protein_coding	protein_coding	6	99	2	2.38802	2.74131	3.0946	0.00178825	7.51561e-4	0.0392749	0.0251179
chr2	74154005	74154103	1156877	0	-	0.5	(0.476,0.515]	chr2	123692	16	UTR3	UTR3:EXON_MRNA	MOB1A	ENSG00000114978.18	ENST00000396049.5	protein_coding	protein_coding	protein_coding	protein_coding	9	132	2	1.67133	2.741305	3.81128	0.012282	1.64105e-5	0.0970106	0.00324999
chr3	128069854	128069950	1496711	0	+	0.395833	(0.378,0.408]	chr3	156306	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	SEC61A1	ENSG00000058262.10	ENST00000243253.8:ENST00000424880.2:ENST00000483956.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	114	2	2.44367	2.741275	3.03888	0.00102794	7.28566e-4	0.029231300000000002	0.0245975
chr6	27843055	27843155	2839067	0	+	0.26	[0,0.28]	chr6	266457	10	INTRON	INTRON	H2BC15	ENSG00000233822.6	ENST00000449538.3:ENST00000606613.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	175	2	2.1412	2.74126	3.34132	0.00319206	5.88003e-4	0.0520345	0.0224709
chr7	128543327	128543427	3407477	0	+	0.38	(0.378,0.408]	chr7	318333	92	INTRON	INTRON	ENSG00000280828	ENSG00000280828.1	ENST00000479267.2	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	5	78	2	2.37969	2.741215	3.10274	0.00586642	0.00190547	0.0668095	0.0403738
chr11	57775013	57775113	4793263	0	+	0.36	(0.35,0.378]	chr11	443717	105	INTRON	INTRON	ENSG00000288534:CTNND1	ENSG00000288534.1:ENSG00000198561.16	ENST00000673781.1:ENST00000673810.1:ENST00000674116.1:ENST00000674060.1:ENST00000524630.5:ENST00000529919.5:ENST00000533189.1:ENST00000682741.1:ENST00000358694.10:ENST00000361332.8:ENST00000361391.10:ENST00000361796.9:ENST00000415361.6:ENST00000426142.6:ENST00000428599.6:ENST00000525902.5:ENST00000526357.5:ENST00000526772.5:ENST00000527467.5:ENST00000528232.5:ENST00000528621.5:ENST00000529526.5:ENST00000529873.5:ENST00000529986.5:ENST00000530094.5:ENST00000530748.5:ENST00000531014.5:ENST00000532245.5:ENST00000532463.5:ENST00000532649.5:ENST00000532787.5:ENST00000532844.5:ENST00000533667.5:ENST00000534579.5:ENST00000399050.10:ENST00000526938.5:ENST00000531007.2:ENST00000674015.1:ENST00000673826.1:ENST00000673683.1:ENST00000674106.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	169	2	2.30968	2.7412	3.17272	6.21878e-4	1.5358e-4	0.0223951	0.0113219
chr9	37880266	37880362	4252549	0	-	0.385417	(0.378,0.408]	chr9	391632	10	EXON_LNCRNA	EXON_LNCRNA	SLC25A51	ENSG00000122696.14	ENST00000496760.5	protein_coding	processed_transcript	protein_coding	processed_transcript	6	104	2	2.32825	2.7412	3.15415	0.00317471	4.11608e-4	0.0503542	0.0181365
chr16	57185830	57185925	6493107	0	-	0.589474	(0.57,1]	chr16	627988	4	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	PSME3IP1	ENSG00000172775.17	ENST00000309137.13:ENST00000566077.5:ENST00000567439.5:ENST00000564108.5:ENST00000562324.5:ENST00000565458.5:ENST00000566584.5:ENST00000565760.5:ENST00000566481.5:ENST00000570184.1:ENST00000566681.1:ENST00000565353.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	33	266	2	2.54187	2.741145	2.94042	1.48255e-6	1.49717e-7	8.00285e-4	1.76521e-4
chr16	22331141	22331238	6321893	0	+	0.515464	(0.515,0.57]	chr16	605284	22	INTRON	INTRON	POLR3E	ENSG00000058600.16	ENST00000615879.4:ENST00000299853.10:ENST00000564209.5:ENST00000418581.6:ENST00000359210.8:ENST00000564750.5:ENST00000563282.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	85	2	1.67702	2.74111	3.8052	0.0122403	1.67082e-4	0.0910127	0.0111796
chr6	15057478	15057577	3063510	0	-	0.464646	(0.44,0.476]	chr6	284666	39	INTRON	INTRON	ENSG00000234261	ENSG00000234261.5	ENST00000653525.1:ENST00000656468.1:ENST00000656344.1:ENST00000437648.1:ENST00000656807.1	lncRNA	lncRNA	lncRNA	lncRNA	4	64	2	2.12992	2.7410949999999996	3.35227	0.010975	0.0022005699999999998	0.092635	0.0417893
chr15	28204600	28204695	6122839	0	-	0.305263	(0.28,0.32]	chr15	583178	8	INTRON	INTRON	HERC2	ENSG00000128731.18	ENST00000261609.13	protein_coding	protein_coding	protein_coding	protein_coding	10	212	2	2.49702	2.74108	2.98514	4.57941e-4	2.44381e-4	0.0193643	0.0144094
chr7	111321285	111321385	3621695	0	-	0.21	[0,0.28]	chr7	337093	3574	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	77	2	2.33097	2.740995	3.15102	0.0158969	0.00767596	0.109464	0.0753665
chr1	229335521	229335620	652539	0	-	0.424242	(0.408,0.44]	chr1	77248	76	INTRON	INTRON	CCSAP	ENSG00000154429.11	ENST00000366687.5:ENST00000284617.7:ENST00000366686.1:ENST00000483092.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	82	2	1.99397	2.7409499999999998	3.48793	0.00610802	0.00130904	0.0706941	0.0331539
chrX	45021230	45021330	7650089	0	+	0.3	(0.28,0.32]	chrX	782757	1	INTRON	INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000675440.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000621147.5:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1:ENST00000675525.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	50	2	2.45545	2.740885	3.02632	0.0438092	0.0071944	0.14901	0.0756118
chr21	33589744	33589832	7441744	0	-	0.318182	(0.28,0.32]	chr21	759592	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	ENSG00000249209:CRYZL1	ENSG00000249209.2:ENSG00000205758.12	ENST00000429238.2:ENST00000381554.8:ENST00000290244.9:ENST00000468349.1:ENST00000381540.7:ENST00000452420.5:ENST00000441940.5:ENST00000480893.5:ENST00000445393.5:ENST00000437996.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	51	2	2.2609	2.7408200000000003	3.22074	0.0671429	0.00362783	0.183051	0.055479
chr3	23849982	23850081	1388170	0	+	0.282828	(0.28,0.32]	chr3	145385	381	INTRON	INTRON	UBE2E1	ENSG00000170142.12	ENST00000306627.8:ENST00000346855.7:ENST00000495141.5:ENST00000442670.5:ENST00000424381.5:ENST00000467766.5:ENST00000475680.5:ENST00000452012.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	51	2	2.2609	2.7408200000000003	3.22074	0.0671429	0.00362783	0.183051	0.055479
chr6	159750607	159750705	3022628	0	+	0.285714	(0.28,0.32]	chr6	281925	2	INTRON	INTRON	WTAP	ENSG00000146457.16	ENST00000358372.8:ENST00000650096.1:ENST00000621533.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	194	2	2.25832	2.74071	3.2231	0.00354259	2.96601e-5	0.0529186	0.00433221
chr16	2262177	2262207	6431633	0	-	0.433333	(0.408,0.44]	chr16	618789	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	RNPS1	ENSG00000205937.12	ENST00000397086.6:ENST00000566458.5:ENST00000320225.10:ENST00000566397.5:ENST00000565678.5:ENST00000561718.5:ENST00000568631.5:ENST00000569598.6:ENST00000301730.12:ENST00000567147.5:ENST00000565870.5:ENST00000561518.5:ENST00000564311.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	41	2	2.27698	2.740675	3.20437	0.0583528	0.00306596	0.167723	0.0509893
chr17	32708099	32708198	6755396	0	-	0.434343	(0.408,0.44]	chr17	663954	240	INTRON	INTRON	MYO1D	ENSG00000176658.17	ENST00000318217.10:ENST00000394649.8:ENST00000579584.5:ENST00000585094.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	41	2	2.27698	2.740675	3.20437	0.0583528	0.00306596	0.167723	0.0509893
chr19	11554725	11554794	7137774	0	-	0.42029	(0.408,0.44]	chr19	720029	3	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ELOF1	ENSG00000130165.10	ENST00000586683.5:ENST00000252445.7:ENST00000587806.5:ENST00000589171.5:ENST00000591674.5:ENST00000586120.5:ENST00000590700.5:ENST00000591912.1	protein_coding	protein_coding	protein_coding	protein_coding	2	41	2	2.27698	2.740675	3.20437	0.0583528	0.00306596	0.167723	0.0509893
chr1	174272013	174272113	258241	0	+	0.31	(0.28,0.32]	chr1	30774	2	SS3_PROX	SS3_PROX:INTRON	RABGAP1L	ENSG00000152061.24	ENST00000357444.10:ENST00000251507.8:ENST00000681986.1:ENST00000457696.1	protein_coding	protein_coding	protein_coding	protein_coding	2	50	2	2.67975	2.74066	2.80157	0.0252505	0.0147132	0.12011	0.106558
chr9	4795023	4795123	4094886	0	+	0.44	(0.408,0.44]	chr9	373155	14	INTRON	INTRON	RCL1	ENSG00000120158.12	ENST00000381750.9:ENST00000381732.3:ENST00000442869.5:ENST00000473230.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	121	2	2.38669	2.7406449999999998	3.0946	7.51561e-4	5.58744e-4	0.0251179	0.0215418
chr16	58553960	58554060	6495596	0	-	0.25	[0,0.28]	chr16	628527	1	SS3_PROX	SS3_PROX:INTRON	CNOT1	ENSG00000125107.19	ENST00000317147.10:ENST00000569240.5:ENST00000567188.5:ENST00000441024.6:ENST00000569732.1:ENST00000562046.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	95	2	2.58137	2.740595	2.89982	0.0158893	0.00250515	0.101453	0.0464447
chr4	78827248	78827347	1981896	0	+	0.444444	(0.44,0.476]	chr4	198473	7	INTRON	INTRON	BMP2K	ENSG00000138756.19	ENST00000389010.7:ENST00000502613.3:ENST00000502871.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	135	2	2.58947	2.7405850000000003	2.8917	8.97428e-4	1.22121e-4	0.0276857	0.00944529
chr1	153885823	153885923	557394	0	-	0.39	(0.378,0.408]	chr1	65983	571	INTRON	INTRON	GATAD2B	ENSG00000143614.10	ENST00000368655.5:ENST00000634544.1:ENST00000634408.1:ENST00000634401.1:ENST00000634791.1:ENST00000636014.1:ENST00000637331.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	58	2	2.53503	2.74058	2.94613	0.0319942	0.00112461	0.13174	0.0308177
chr10	49968146	49968245	4432893	0	+	0.40404	(0.378,0.408]	chr10	408699	93	INTRON	INTRON	TIMM23B:TIMM23B-AGAP6	ENSG00000204152.14:ENSG00000178440.8	ENST00000478381.5:ENST00000651259.3:ENST00000651763.1:ENST00000651208.1:ENST00000652716.1:ENST00000483296.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	77	2	1.80483	2.7404599999999997	3.67609	0.0201276	6.32264e-4	0.121243	0.0231174
chr16	21862592	21862690	6461867	0	-	0.510204	(0.476,0.515]	chr16	623459	45	INTRON	INTRON	NPIPB4	ENSG00000185864.18	ENST00000539318.5:ENST00000536041.5:ENST00000543449.1:ENST00000541674.5:ENST00000544693.5:ENST00000538859.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	11	167	2	2.20125	2.740305	3.27936	9.99701e-4	3.89817e-5	0.0288906	0.00504677
chr1	86884186	86884285	498811	0	-	0.343434	(0.32,0.35]	chr1	59190	31	INTRON	INTRON	SELENOF	ENSG00000183291.18	ENST00000331835.10:ENST00000370554.5:ENST00000648872.1:ENST00000469566.5:ENST00000401030.4:ENST00000497861.5:ENST00000467557.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	63	2	1.94202	2.74028	3.53854	0.0486128	9.09596e-4	0.153946	0.0277043
chr11	47726508	47726604	4950988	0	-	0.322917	(0.32,0.35]	chr11	464381	19	EXON_MRNA	EXON_MRNA:INTRON	FNBP4	ENSG00000109920.13	ENST00000263773.10:ENST00000530207.1:ENST00000525792.5:ENST00000531394.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	63	2	1.94202	2.74028	3.53854	0.0486128	9.09596e-4	0.153946	0.0277043
chr9	123160066	123160166	4339382	0	-	0.34	(0.32,0.35]	chr9	398897	3	SS5_PROX	SS5_PROX:INTRON	STRBP	ENSG00000165209.19	ENST00000348403.10:ENST00000447404.6:ENST00000360998.3:ENST00000407982.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	63	2	1.94202	2.74028	3.53854	0.0486128	9.09596e-4	0.153946	0.0277043
chr9	15491287	15491382	4235885	0	-	0.389474	(0.378,0.408]	chr9	389320	8	INTRON	INTRON	PSIP1	ENSG00000164985.15	ENST00000380738.8:ENST00000380733.9:ENST00000380716.8:ENST00000380715.5:ENST00000397519.6:ENST00000487363.5:ENST00000463712.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	42	2	2.30961	2.74025	3.17089	0.055088	0.00357279	0.165463	0.0548435
chr1	28435211	28435309	56492	0	+	0.367347	(0.35,0.378]	chr1	7281	18	INTRON	INTRON	PHACTR4	ENSG00000204138.13	ENST00000633371.1:ENST00000632202.1:ENST00000632421.1:ENST00000463428.5:ENST00000373839.8:ENST00000493669.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	58	2	2.59046	2.740245	2.89003	0.0122391	0.00528327	0.0910127	0.0656295
chr1	212334623	212334722	308572	0	+	0.353535	(0.35,0.378]	chr1	35592	2	INTRON	INTRON	PPP2R5A	ENSG00000066027.12	ENST00000261461.7:ENST00000537030.3:ENST00000498129.6:ENST00000479259.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	58	2	2.59046	2.740245	2.89003	0.0122391	0.00528327	0.0910127	0.0656295
chr1	183493947	183494047	273722	0	+	0.39	(0.378,0.408]	chr1	32019	197	INTRON	INTRON	SMG7	ENSG00000116698.22	ENST00000440812.7:ENST00000367537.7:ENST00000688051.1:ENST00000685780.1:ENST00000508461.5:ENST00000347615.6:ENST00000419169.5:ENST00000444547.6:ENST00000507469.5:ENST00000515829.6:ENST00000367538.1:ENST00000502375.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	76	2	1.9714	2.740235	3.50907	0.0109363	0.00127828	0.0924799	0.0326395
chr3	41211963	41212063	1403149	0	+	0.39	(0.378,0.408]	chr3	147417	112	INTRON	INTRON	CTNNB1	ENSG00000168036.18	ENST00000643541.1:ENST00000426215.5:ENST00000645210.1:ENST00000646381.1:ENST00000405570.6:ENST00000642248.1:ENST00000433400.6:ENST00000642992.1:ENST00000431914.6:ENST00000642836.1:ENST00000396185.8:ENST00000642986.1:ENST00000644678.1:ENST00000643031.1:ENST00000396183.7:ENST00000645982.1:ENST00000453024.6:ENST00000645900.1:ENST00000647264.1:ENST00000646174.1:ENST00000643992.1:ENST00000642886.1:ENST00000647390.1:ENST00000643052.1:ENST00000488914.2:ENST00000349496.11:ENST00000642426.1:ENST00000646074.1:ENST00000645276.1:ENST00000644138.1:ENST00000646116.1:ENST00000644873.1:ENST00000643865.1:ENST00000644867.1:ENST00000646725.1:ENST00000645493.1:ENST00000646369.1:ENST00000643977.1:ENST00000647413.1:ENST00000644524.1:ENST00000645305.1:ENST00000643297.1:ENST00000450969.6:ENST00000642315.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	76	2	1.9714	2.740235	3.50907	0.0109363	0.00127828	0.0924799	0.0326395
chr1	88708710	88708810	156013	0	+	0.48	(0.476,0.515]	chr1	17045	237	INTRON	INTRON	PKN2	ENSG00000065243.20	ENST00000316005.11:ENST00000370521.8:ENST00000370513.9	protein_coding	protein_coding	protein_coding	protein_coding	2	40	2	2.40608	2.74015	3.07422	0.0425709	0.00506023	0.148082	0.0646039
chr6	125972728	125972828	2955974	0	+	0.48	(0.476,0.515]	chr6	277953	4	SS5_PROX	SS5_PROX:INTRON	HINT3	ENSG00000111911.7	ENST00000229633.7	protein_coding	protein_coding	protein_coding	protein_coding	2	40	2	2.40608	2.74015	3.07422	0.0425709	0.00506023	0.148082	0.0646039
chr11	57498245	57498345	4953622	0	-	0.51	(0.476,0.515]	chr11	465035	4	SS3_PROX	SS3_PROX:INTRON	SLC43A1	ENSG00000149150.9	ENST00000278426.8:ENST00000528450.5:ENST00000525764.5:ENST00000533515.5:ENST00000530159.5:ENST00000533066.5:ENST00000524995.5:ENST00000534105.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	53	2	2.53671	2.740105	2.9435	0.00929849	0.00624027	0.0817766	0.0718843
chr17	80293024	80293123	6683389	0	+	0.353535	(0.35,0.378]	chr17	652993	8	INTRON	INTRON	RNF213	ENSG00000173821.20	ENST00000582970.6:ENST00000508628.6:ENST00000319921.4:ENST00000559070.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	58	2	2.39583	2.7400700000000002	3.08431	0.0107976	0.0065853	0.0920575	0.0701901
chr2	55234204	55234293	781611	0	+	0.314607	(0.28,0.32]	chr2	87990	1	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	RPS27A	ENSG00000143947.15	ENST00000402285.7:ENST00000449323.5:ENST00000404735.1:ENST00000272317.11:ENST00000478196.6:ENST00000495843.1:ENST00000468810.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	159	2	2.28563	2.7400399999999996	3.19445	0.00355956	2.16183e-4	0.0548355	0.0134577
chr16	75393993	75394092	6528901	0	-	0.494949	(0.476,0.515]	chr16	632325	21	INTRON	INTRON	CFDP1	ENSG00000153774.9	ENST00000283882.4:ENST00000612761.1:ENST00000569341.1:ENST00000570279.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	53	2	2.37731	2.7399750000000003	3.10264	0.0111793	0.00543163	0.0937192	0.0645052
chr3	5130880	5130980	1353661	0	+	0.35	(0.32,0.35]	chr3	142361	19	INTRON	INTRON	ARL8B	ENSG00000134108.14	ENST00000429403.5:ENST00000256496.8:ENST00000455168.5:ENST00000444332.1:ENST00000419534.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	103	2	2.48856	2.7399050000000003	2.99125	0.00958447	6.8257e-4	0.0820838	0.023782
chr1	26840707	26840807	52354	0	+	0.44	(0.408,0.44]	chr1	6697	77	INTRON	INTRON	ZDHHC18	ENSG00000204160.12	ENST00000374142.9:ENST00000374141.6:ENST00000534643.5	protein_coding	protein_coding	protein_coding	protein_coding	2	41	2	2.58179	2.73987	2.89795	0.024638	0.0110735	0.131869	0.0873897
chr11	65435554	65435654	4805898	0	+	0.59	(0.57,1]	chr11	446554	129	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	34	254	2	2.16332	2.73987	3.31642	2.08106e-5	1.76078e-8	0.00353198	4.22833e-5
chr17	29406802	29406901	6585800	0	+	0.414141	(0.408,0.44]	chr17	640377	28	INTRON	INTRON	TAOK1	ENSG00000160551.12	ENST00000261716.8:ENST00000583121.5:ENST00000587277.1:ENST00000536202.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	41	2	2.58179	2.73987	2.89795	0.024638	0.0110735	0.131869	0.0873897
chr17	77412321	77412421	6680769	0	+	0.42	(0.408,0.44]	chr17	652538	68	INTRON	INTRON	SEPTIN9	ENSG00000184640.20	ENST00000591198.5:ENST00000427177.6:ENST00000431235.6:ENST00000449803.6:ENST00000329047.13:ENST00000588575.1:ENST00000590294.6:ENST00000588690.6:ENST00000423034.6:ENST00000590059.5:ENST00000427674.6:ENST00000592420.1:ENST00000585930.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	41	2	2.58179	2.73987	2.89795	0.024638	0.0110735	0.131869	0.0873897
chr2	120098350	120098450	859149	0	+	0.5	(0.476,0.515]	chr2	96408	47	INTRON	INTRON	EPB41L5	ENSG00000115109.14	ENST00000263713.10:ENST00000443902.6:ENST00000331393.8:ENST00000443124.5:ENST00000452780.1:ENST00000489017.5:ENST00000461128.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	41	2	2.23335	2.739825	3.2463	0.0634557	0.00262374	0.177047	0.0470772
chr1	1768334	1768433	361635	0	-	0.424242	(0.408,0.44]	chr1	42219	25	INTRON	INTRON	NADK	ENSG00000008130.15	ENST00000378625.5:ENST00000341991.7:ENST00000341426.9:ENST00000492845.6:ENST00000492768.5:ENST00000460602.5:ENST00000464373.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	75	2	1.7519	2.7397549999999997	3.72761	0.0239555	4.662e-4	0.129259	0.0199613
chr18	13746936	13747035	6878188	0	+	0.373737	(0.35,0.378]	chr18	681651	2	INTRON	INTRON	RNMT	ENSG00000101654.18	ENST00000543302.6:ENST00000588457.5:ENST00000383314.7:ENST00000592764.5:ENST00000589866.5:ENST00000262173.7:ENST00000593007.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	70	2	2.39519	2.73975	3.08431	0.0065853	0.00401951	0.0701901	0.0578189
chr6	7140347	7140447	2798690	0	+	0.35	(0.32,0.35]	chr6	263728	3	SS3_PROX	SS3_PROX:INTRON	RREB1	ENSG00000124782.21	ENST00000379933.7:ENST00000491191.5:ENST00000471433.5:ENST00000379938.7:ENST00000467782.5:ENST00000349384.10:ENST00000334984.10:ENST00000475946.5:ENST00000483150.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	104	2	1.93022	2.73974	3.54926	0.00608869	0.00133843	0.0705469	0.0335491
chr1	28231144	28231242	409346	0	-	0.479592	(0.476,0.515]	chr1	49284	5	INTRON	INTRON	DNAJC8	ENSG00000126698.11	ENST00000263697.6:ENST00000489277.5:ENST00000482674.5:ENST00000488868.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	40	2	2.65268	2.739705	2.82673	0.0201975	0.0134403	0.121243	0.0946278
chr1	211970993	211971092	631728	0	-	0.50505	(0.476,0.515]	chr1	74710	19	INTRON	INTRON	INTS7	ENSG00000143493.13	ENST00000469606.5:ENST00000366994.8:ENST00000366993.7:ENST00000366992.7:ENST00000440600.6:ENST00000475798.5:ENST00000461212.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	40	2	2.65268	2.739705	2.82673	0.0201975	0.0134403	0.121243	0.0946278
chr7	8061244	8061343	3279922	0	+	0.515152	(0.476,0.515]	chr7	304783	6	INTRON	INTRON	GLCCI1	ENSG00000106415.13	ENST00000223145.10:ENST00000430798.1:ENST00000414914.5:ENST00000474269.5:ENST00000489405.5:ENST00000438949.1:ENST00000496617.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	40	2	2.65268	2.739705	2.82673	0.0201975	0.0134403	0.121243	0.0946278
chr12	121311605	121311705	5436756	0	-	0.42	(0.408,0.44]	chr12	519847	12	INTRON	INTRON	ANAPC5	ENSG00000089053.13	ENST00000261819.8:ENST00000535641.5:ENST00000541887.5:ENST00000534976.5:ENST00000441917.6:ENST00000539079.5:ENST00000544314.5:ENST00000535482.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	104	2	2.56776	2.7396599999999998	2.91156	0.00227507	3.17111e-4	0.0426265	0.0159645
chr21	45085577	45085677	7417962	0	+	0.39	(0.378,0.408]	chr21	756262	104	INTRON	INTRON	ADARB1	ENSG00000197381.17	ENST00000462214.5:ENST00000460734.5:ENST00000348831.9:ENST00000389861.7:ENST00000389863.8:ENST00000492414.5:ENST00000496664.5:ENST00000437626.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	42	2	2.63247	2.7395500000000004	2.84663	0.0215745	0.0133954	0.123836	0.0946278
chr20	49145699	49145799	7351946	0	-	0.46	(0.44,0.476]	chr20	749652	94	INTRON	INTRON	STAU1	ENSG00000124214.21	ENST00000371856.7:ENST00000371828.7:ENST00000340954.11:ENST00000347458.9:ENST00000360426.8:ENST00000371792.5:ENST00000371802.5:ENST00000437404.2	protein_coding	protein_coding	protein_coding	protein_coding	7	89	2	1.89689	2.73954	3.58219	0.00630125	8.57842e-4	0.0722266	0.0267428
chr3	155853379	155853465	1844339	0	-	0.488372	(0.476,0.515]	chr3	185568	2	CDS	CDS:EXON_MRNA	SLC33A1	ENSG00000169359.16	ENST00000643144.2:ENST00000359479.7:ENST00000468581.2:ENST00000646424.1:ENST00000644094.1:ENST00000642438.1:ENST00000644855.1:ENST00000475842.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	99	2	2.67243	2.73947	2.80651	0.00250121	4.26065e-4	0.0446195	0.0184573
chr1	29175381	29175481	410379	0	-	0.58	(0.57,1]	chr1	49421	20	INTRON	INTRON	SRSF4	ENSG00000116350.18	ENST00000373795.7:ENST00000691479.1:ENST00000466448.4:ENST00000605204.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	86	2	2.72675	2.739405	2.75206	8.47159e-5	7.00401e-5	0.00823834	0.00692867
chr9	122276854	122276953	4194229	0	+	0.454545	(0.44,0.476]	chr9	382675	54	INTRON	INTRON	MRRF	ENSG00000148187.18	ENST00000297908.7:ENST00000344641.8:ENST00000441707.5:ENST00000373723.9:ENST00000373729.5:ENST00000373728.6:ENST00000373727.5:ENST00000470366.5:ENST00000373724.1:ENST00000467864.5:ENST00000489572.5:ENST00000394315.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	75	2	2.44514	2.73932	3.0335	0.0087381	9.65686e-4	0.0845538	0.0282401
chr7	155657490	155657590	3452023	0	+	0.46	(0.44,0.476]	chr7	322642	122	INTRON	INTRON	RBM33	ENSG00000184863.11	ENST00000287912.7:ENST00000401878.8:ENST00000392759.7	protein_coding	protein_coding	protein_coding	protein_coding	8	119	2	2.08707	2.7392200000000004	3.39137	0.00262893	1.73175e-4	0.0471412	0.0120833
chr10	59865782	59865882	4623472	0	-	0.42	(0.408,0.44]	chr10	425682	127	INTRON	INTRON	CCDC6	ENSG00000108091.11	ENST00000263102.7	protein_coding	protein_coding	protein_coding	protein_coding	2	40	2	2.58624	2.739085	2.89193	0.0273686	0.00950364	0.123904	0.0863579
chr19	57284777	57284877	7103573	0	+	0.44	(0.408,0.44]	chr19	712856	1	SS5_PROX	SS5_PROX:INTRON	ZNF460	ENSG00000197714.9	ENST00000537645.5:ENST00000360338.4:ENST00000599602.1	protein_coding	protein_coding	protein_coding	protein_coding	2	40	2	2.58624	2.739085	2.89193	0.0273686	0.00950364	0.123904	0.0863579
chr2	98609237	98609331	834426	0	+	0.43617	(0.408,0.44]	chr2	93574	8	UTR5	UTR5:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	UNC50	ENSG00000115446.12	ENST00000409975.5:ENST00000357765.7:ENST00000409347.5	protein_coding	protein_coding	protein_coding	protein_coding	2	40	2	2.58624	2.739085	2.89193	0.0273686	0.00950364	0.123904	0.0863579
chr1	171504973	171505073	253409	0	+	0.34	(0.32,0.35]	chr1	30096	189	INTRON	INTRON	PRRC2C	ENSG00000117523.18	ENST00000647382.2:ENST00000367742.7:ENST00000476522.5:ENST00000338920.8:ENST00000467601.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	46	2	2.51061	2.739035	2.96746	0.0364463	0.00815799	0.138959	0.0810802
chr19	1641969	1642068	7113008	0	-	0.434343	(0.408,0.44]	chr19	714651	92	INTRON	INTRON	TCF3	ENSG00000071564.17	ENST00000344749.9:ENST00000611869.5:ENST00000262965.12:ENST00000588136.7:ENST00000453954.6:ENST00000395423.7:ENST00000587235.6:ENST00000586318.1	protein_coding	protein_coding	protein_coding	protein_coding	3	54	2	2.21857	2.739025	3.25948	0.0209591	0.00246454	0.112046	0.0459102
chr17	35698223	35698323	6600670	0	+	0.33	(0.32,0.35]	chr17	642348	150	INTRON	INTRON	AP2B1	ENSG00000006125.18	ENST00000621914.4:ENST00000620039.4:ENST00000616681.4:ENST00000610402.5:ENST00000612116.5:ENST00000618940.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	62	2	2.6297	2.73891	2.84812	0.0147575	0.00476699	0.0983813	0.0636201
chr2	38563315	38563411	1099366	0	-	0.322917	(0.32,0.35]	chr2	117891	15	UTR3	UTR3:EXON_MRNA	HNRNPLL	ENSG00000143889.16	ENST00000449105.8:ENST00000409636.5:ENST00000358367.8:ENST00000608859.5:ENST00000378915.7	protein_coding	protein_coding	protein_coding	protein_coding	2	46	2	2.6321	2.738895	2.84569	0.0268	0.0121137	0.123349	0.0962599
chr1	15895644	15895743	35144	0	+	0.343434	(0.32,0.35]	chr1	4272	186	INTRON	INTRON	SPEN	ENSG00000065526.12	ENST00000673875.1:ENST00000375759.8:ENST00000438066.1:ENST00000442985.1	protein_coding	protein_coding	protein_coding	protein_coding	5	87	2	1.50185	2.738875	3.9759	0.0589483	1.14401e-4	0.167915	0.00914947
chr5	139308527	139308627	2499530	0	+	0.32	(0.28,0.32]	chr5	238920	2	SS5_PROX	SS5_PROX:INTRON	MATR3	ENSG00000280987.4:ENSG00000015479.20	ENST00000509990.5:ENST00000506147.5:ENST00000512107.5:ENST00000361059.7:ENST00000394800.6:ENST00000502929.5:ENST00000504203.5:ENST00000509644.5:ENST00000512876.5:ENST00000513678.5:ENST00000513121.1:ENST00000504045.5:ENST00000504311.5:ENST00000502499.5:ENST00000510056.5:ENST00000511249.5:ENST00000394805.8:ENST00000507860.1:ENST00000509918.5:ENST00000503811.5:ENST00000511978.5:ENST00000618441.5:ENST00000514528.5:ENST00000504643.5:ENST00000515833.2:ENST00000514402.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	112	2	2.50462	2.73874	2.97286	0.0102735	3.34495e-4	0.0850389	0.0162792
chr6	3260094	3260194	2789255	0	+	0.46	(0.44,0.476]	chr6	263445	5	INTRON	INTRON	PSMG4	ENSG00000180822.12	ENST00000509933.1:ENST00000380306.8:ENST00000380305.4:ENST00000438998.7:ENST00000419065.6:ENST00000473000.2:ENST00000324987.4:ENST00000451246.2:ENST00000454610.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	66	2	2.2193	2.738655	3.25801	0.00896114	0.00248185	0.0800073	0.0460771
chr3	47416056	47416150	1682227	0	-	0.574468	(0.57,1]	chr3	171787	5	INTRON	INTRON	SCAP	ENSG00000114650.21	ENST00000265565.10:ENST00000441517.6:ENST00000320017.10:ENST00000648151.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	29	2	2.47993	2.73861	2.99729	0.007207	0.00538023	0.0756278	0.0642754
chr19	15295646	15295746	7147037	0	-	0.58	(0.57,1]	chr19	721965	153	INTRON	INTRON	BRD4	ENSG00000141867.19	ENST00000679869.1:ENST00000360016.9:ENST00000594841.5:ENST00000597315.5:ENST00000601941.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	29	2	2.38391	2.7385200000000003	3.09313	0.0104374	0.00369015	0.0902296	0.0535094
chr15	65764395	65764493	6209514	0	-	0.489796	(0.476,0.515]	chr15	592611	26	INTRON	INTRON	DENND4A	ENSG00000174485.16	ENST00000443035.8:ENST00000431932.6:ENST00000564674.5:ENST00000568515.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	98	2	2.2792	2.738505	3.19781	0.00299196	4.3655e-4	0.0503888	0.0191798
chr6	147211664	147211764	2988780	0	+	0.48	(0.476,0.515]	chr6	280001	52	INTRON	INTRON	STXBP5	ENSG00000164506.15	ENST00000321680.11:ENST00000367481.7:ENST00000546097.5:ENST00000367480.7	protein_coding	protein_coding	protein_coding	protein_coding	10	167	2	2.7004	2.738455	2.77651	1.70478e-4	1.66129e-4	0.0118127	0.0113543
chr4	894645	894736	2093905	0	-	0.527473	(0.515,0.57]	chr4	206941	8	EXON_MRNA	EXON_MRNA:INTRON	GAK	ENSG00000178950.18	ENST00000314167.9:ENST00000511163.5:ENST00000504435.1:ENST00000505819.5:ENST00000507580.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	47	2	1.9459	2.738375	3.53085	0.0429089	6.59951e-4	0.148082	0.0232396
chr22	16796577	16796677	7546365	0	-	0.29	(0.28,0.32]	chr22	771315	118	INTRON	INTRON	XKR3	ENSG00000172967.8	ENST00000331428.5:ENST00000684488.1	protein_coding	protein_coding	protein_coding	protein_coding	6	126	2	2.04207	2.7383699999999997	3.43467	0.0121395	1.38843e-4	0.0910127	0.0101519
chr12	57390650	57390750	5338854	0	-	0.47	(0.44,0.476]	chr12	510710	493	INTRON	INTRON	R3HDM2	ENSG00000179912.21	ENST00000402412.6:ENST00000347140.7:ENST00000634871.1:ENST00000448732.1	protein_coding	protein_coding	protein_coding	protein_coding	6	98	2	2.38634	2.738365	3.09039	0.0018045	7.4601e-4	0.039301	0.0251072
chr16	84734494	84734593	6410256	0	+	0.40404	(0.378,0.408]	chr16	615290	6	INTRON	INTRON	USP10	ENSG00000103194.16	ENST00000562743.5:ENST00000540269.6:ENST00000563892.5:ENST00000562092.1:ENST00000219473.12:ENST00000570191.5:ENST00000563048.5:ENST00000562283.5:ENST00000563386.5:ENST00000569038.5:ENST00000570053.1:ENST00000566512.1:ENST00000563023.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	56	2	2.72993	2.738195	2.74646	0.0188736	0.00271684	0.108861	0.0481064
chr7	107195333	107195433	3378632	0	+	0.4	(0.378,0.408]	chr7	316361	1	SS3_PROX	SS3_PROX:INTRON	HBP1	ENSG00000105856.14	ENST00000468410.5:ENST00000222574.9:ENST00000485846.5:ENST00000463202.5:ENST00000498408.1:ENST00000461963.1:ENST00000483809.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	56	2	2.72993	2.738195	2.74646	0.0188736	0.00271684	0.108861	0.0481064
chr4	48832119	48832219	1958222	0	+	0.31	(0.28,0.32]	chr4	196205	1	SS3_PROX	SS3_PROX:INTRON	OCIAD1	ENSG00000109180.15	ENST00000504654.5:ENST00000509122.5:ENST00000505922.6:ENST00000509664.5:ENST00000514981.5:ENST00000512981.5:ENST00000507210.5:ENST00000508996.5:ENST00000511662.5:ENST00000396448.6:ENST00000512236.5:ENST00000509164.5:ENST00000381473.7:ENST00000511102.5:ENST00000264312.12:ENST00000444354.6:ENST00000509963.5:ENST00000509246.5:ENST00000506801.5:ENST00000503016.5:ENST00000510824.5:ENST00000507546.5:ENST00000513641.5:ENST00000425583.6:ENST00000508293.5:ENST00000513391.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	82	2	1.96802	2.7381900000000003	3.50836	0.0251578	0.00117393	0.12011	0.0316446
chr20	47285041	47285140	7348787	0	-	0.343434	(0.32,0.35]	chr20	749306	10	INTRON	INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000467200.6:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000468376.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	105	2	1.4159	2.7381699999999998	4.06044	0.0467477	7.3644e-5	0.151803	0.00714826
chr9	85652463	85652562	4275428	0	-	0.434343	(0.408,0.44]	chr9	393279	57	INTRON	INTRON	AGTPBP1	ENSG00000135049.16	ENST00000357081.8:ENST00000376083.7:ENST00000337006.8:ENST00000628899.1	protein_coding	protein_coding	protein_coding	protein_coding	3	55	2	1.88062	2.73813	3.59564	0.0534548	5.73354e-4	0.162935	0.0217398
chr6	35881030	35881130	3088416	0	-	0.26	[0,0.28]	chr6	288860	63	INTRON	INTRON	SRPK1	ENSG00000096063.16	ENST00000373825.7:ENST00000423325.6:ENST00000346162.10:ENST00000361690.7:ENST00000510290.5:ENST00000373821.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	106	2	1.90035	2.738105	3.57586	0.0173564	0.00187793	0.112318	0.039073
chr2	201197845	201197945	982319	0	+	0.31	(0.28,0.32]	chr2	105484	15	INTRON	INTRON	CASP10	ENSG00000003400.16	ENST00000374650.8:ENST00000492363.6:ENST00000460140.5:ENST00000313728.12:ENST00000272879.9:ENST00000346817.10:ENST00000696199.1:ENST00000286186.11:ENST00000438843.6:ENST00000448480.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	67	2	2.51426	2.7380649999999997	2.96187	0.0114995	0.00781326	0.0889104	0.0788246
chrX	101355275	101355372	7855811	0	-	0.319588	(0.28,0.32]	chrX	800870	7	EXON_MRNA	EXON_MRNA:INTRON	BTK	ENSG00000010671.18	ENST00000695616.1:ENST00000695617.1:ENST00000695615.1:ENST00000695614.1:ENST00000621635.4:ENST00000697417.1:ENST00000695620.1:ENST00000308731.8:ENST00000695619.1:ENST00000695618.1:ENST00000478995.2:ENST00000488970.2:ENST00000695621.1:ENST00000695622.1:ENST00000695623.1:ENST00000695624.1:ENST00000695625.1:ENST00000695626.1:ENST00000695627.1:ENST00000695628.1:ENST00000695629.1:ENST00000695630.1:ENST00000695631.1:ENST00000695632.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	67	2	2.51426	2.7380649999999997	2.96187	0.0114995	0.00781326	0.0889104	0.0788246
chr1	176178784	176178883	591430	0	-	0.535354	(0.515,0.57]	chr1	70977	24	INTRON	INTRON	COP1	ENSG00000143207.21	ENST00000367669.8:ENST00000367667.5:ENST00000367666.5:ENST00000649803.1:ENST00000308769.12:ENST00000498306.5:ENST00000491600.5:ENST00000474194.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	46	2	2.57298	2.7380449999999996	2.90311	0.0094233	0.00506495	0.0817766	0.0646039
chr1	45676992	45677092	440492	0	-	0.43	(0.408,0.44]	chr1	53361	154	INTRON	INTRON	GPBP1L1	ENSG00000159592.11	ENST00000290795.7:ENST00000355105.8:ENST00000488278.5:ENST00000480941.1:ENST00000480083.5:ENST00000493083.5:ENST00000460859.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	87	2	2.46587	2.737985	3.0101	0.00280622	0.00109848	0.0488779	0.0304585
chr7	127911901	127912000	3405016	0	+	0.333333	(0.32,0.35]	chr7	318161	67	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000465900.5:ENST00000486037.1:ENST00000484767.5:ENST00000492840.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	121	2	2.53881	2.737955	2.9371	0.00317745	3.44654e-4	0.0503705	0.0165103
chr6	157040262	157040361	3009800	0	+	0.383838	(0.378,0.408]	chr6	281145	30	INTRON	INTRON	ARID1B	ENSG00000049618.24	ENST00000346085.10:ENST00000636930.2:ENST00000647938.1:ENST00000350026.10:ENST00000674298.1:ENST00000674190.1:ENST00000414678.7:ENST00000319584.11:ENST00000452544.2:ENST00000637887.1:ENST00000635849.1:ENST00000637003.1:ENST00000637904.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	70	2	2.30499	2.73794	3.17089	0.00683258	0.00357279	0.0713163	0.0548435
chr2	135053081	135053178	872670	0	+	0.536082	(0.515,0.57]	chr2	97721	2	INTRON	INTRON	RAB3GAP1	ENSG00000115839.19	ENST00000539493.3:ENST00000688088.1:ENST00000693554.1:ENST00000690785.1:ENST00000689880.1:ENST00000264158.13:ENST00000686403.1:ENST00000690208.1:ENST00000691478.1:ENST00000686114.1:ENST00000685967.1:ENST00000442034.5:ENST00000425393.1:ENST00000687199.1:ENST00000691339.1:ENST00000688182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	47	2	2.48902	2.737895	2.98677	0.00760558	0.00632549	0.0749571	0.0722266
chr22	27922669	27922769	7492816	0	+	0.41	(0.408,0.44]	chr22	764485	2	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	TTC28-AS1	ENSG00000235954.8	ENST00000430853.5:ENST00000434221.6:ENST00000417497.6:ENST00000662329.1:ENST00000424161.6:ENST00000419253.1:ENST00000437713.7:ENST00000454741.5:ENST00000659843.1:ENST00000665376.1:ENST00000453632.6:ENST00000662682.1:ENST00000655332.1:ENST00000454996.7:ENST00000665505.1:ENST00000435348.6:ENST00000428818.5:ENST00000664946.1:ENST00000425112.2:ENST00000417381.6:ENST00000654553.1:ENST00000669227.1:ENST00000670661.1:ENST00000452612.5:ENST00000688200.1:ENST00000690710.1:ENST00000670585.1:ENST00000662424.1	lncRNA	lncRNA	lncRNA	lncRNA	3	54	2	2.69457	2.737895	2.78122	0.015812	0.00331036	0.101453	0.0527031
chr1	230075400	230075500	334160	0	+	0.55	(0.515,0.57]	chr1	38926	76	INTRON	INTRON	GALNT2	ENSG00000143641.10	ENST00000494106.1:ENST00000366672.5:ENST00000488903.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	101	2	2.54852	2.73789	2.92726	7.08868e-4	3.10919e-4	0.0242289	0.0162055
chr16	22472645	22472743	6322304	0	+	0.336735	(0.32,0.35]	chr16	605356	4	INTRON	INTRON	SMG1P1	ENSG00000237296.10	ENST00000381231.5:ENST00000309865.11:ENST00000691423.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	13	246	2	2.66434	2.7378850000000003	2.81143	2.33142e-4	6.25693e-5	0.013966	0.00658494
chr2	26118275	26118375	713944	0	+	0.47	(0.44,0.476]	chr2	82453	80	INTRON	INTRON	RAB10	ENSG00000084733.11	ENST00000264710.5:ENST00000495146.5:ENST00000473035.1:ENST00000462003.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	34	2	1.49942	2.73784	3.97626	0.0792118	0.0300538	0.199574	0.142135
chr19	52089600	52089699	7205807	0	-	0.444444	(0.44,0.476]	chr19	731310	2	INTRON	INTRON	ZNF432:ZNF841	ENSG00000256087.7:ENSG00000197608.12	ENST00000598446.1:ENST00000594440.6:ENST00000426391.6:ENST00000594295.5:ENST00000599430.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	75	2	1.96975	2.737795	3.50584	0.0123514	8.66138e-4	0.0914865	0.0266729
chr16	11897539	11897639	6446221	0	-	0.46	(0.44,0.476]	chr16	621117	3	SS5_PROX	SS5_PROX:INTRON	GSPT1	ENSG00000103342.13	ENST00000434724.7:ENST00000439887.6:ENST00000565267.5:ENST00000563468.5:ENST00000420576.6:ENST00000568849.5:ENST00000562169.1	protein_coding	protein_coding	protein_coding	protein_coding	4	65	2	2.50105	2.73778	2.97451	0.00853825	0.00240161	0.0780043	0.0452061
chrX	109717662	109717762	7861544	0	-	0.44	(0.408,0.44]	chrX	801455	211	INTRON	INTRON	ACSL4	ENSG00000068366.21	ENST00000469796.7:ENST00000672401.1:ENST00000348502.10:ENST00000340800.7:ENST00000684030.1:ENST00000682031.1:ENST00000671846.1:ENST00000672282.1:ENST00000502391.6:ENST00000684414.1:ENST00000673016.1:ENST00000508092.5:ENST00000504383.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	65	2	1.87977	2.737705	3.59564	0.0282738	5.73354e-4	0.125825	0.0217398
chr7	23516928	23517028	3503802	0	-	0.48	(0.476,0.515]	chr7	326958	4	SS3_PROX	SS3_PROX:INTRON	TRA2A	ENSG00000164548.12	ENST00000297071.9:ENST00000392502.8:ENST00000538367.6:ENST00000621813.4:ENST00000494255.5:ENST00000474586.5:ENST00000490942.1:ENST00000448549.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	40	2	1.33919	2.737525	4.13586	0.06316	0.031846	0.197199	0.13151
chr7	10755391	10755491	3484334	0	-	0.44	(0.408,0.44]	chr7	325772	1935	INTRON	INTRON	MGC4859	ENSG00000283117.1	ENST00000634803.1	lncRNA	lncRNA	lncRNA	lncRNA	5	76	2	2.41796	2.7375049999999996	3.05705	0.00658331	0.0015483	0.0701901	0.0363194
chr10	21592435	21592535	4404999	0	+	0.44	(0.408,0.44]	chr10	406459	57	INTRON	INTRON	MLLT10	ENSG00000078403.17	ENST00000651097.1:ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000650772.1:ENST00000651298.1:ENST00000495130.5:ENST00000377059.7:ENST00000476557.5:ENST00000462999.5:ENST00000430455.2:ENST00000479634.1:ENST00000480415.6:ENST00000652258.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	40	2	2.51492	2.737495	2.96007	0.0329839	0.00753901	0.133816	0.0773151
chr2	3460646	3460744	686570	0	+	0.428571	(0.408,0.44]	chr2	80529	1	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	TRAPPC12	ENSG00000171853.16	ENST00000382110.6:ENST00000324266.10:ENST00000417243.5:ENST00000469147.5:ENST00000433382.5:ENST00000462983.5:ENST00000479897.5:ENST00000415624.5:ENST00000497597.5:ENST00000473348.5:ENST00000461577.5:ENST00000489032.5:ENST00000437733.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	40	2	2.51492	2.737495	2.96007	0.0329839	0.00753901	0.133816	0.0773151
chr3	141888250	141888350	1526191	0	+	0.42	(0.408,0.44]	chr3	159005	103	INTRON	INTRON	ATP1B3	ENSG00000069849.11	ENST00000475483.5:ENST00000465172.5:ENST00000286371.8:ENST00000466678.5:ENST00000462082.1:ENST00000495216.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	40	2	2.51492	2.737495	2.96007	0.0329839	0.00753901	0.133816	0.0773151
chr7	73446763	73446863	3554326	0	-	0.44	(0.408,0.44]	chr7	330724	1	SS5_PROX	SS5_PROX:INTRON	BAZ1B	ENSG00000009954.11	ENST00000339594.9:ENST00000404251.1	protein_coding	protein_coding	protein_coding	protein_coding	2	40	2	2.51492	2.737495	2.96007	0.0329839	0.00753901	0.133816	0.0773151
chr22	20514802	20514901	7479419	0	+	0.575758	(0.57,1]	chr22	762951	60	INTRON	INTRON	MED15	ENSG00000099917.17	ENST00000445987.5:ENST00000444094.5:ENST00000414658.5:ENST00000486656.5:ENST00000433831.5:ENST00000432052.5:ENST00000292733.11:ENST00000263205.11:ENST00000477824.5:ENST00000406969.5:ENST00000382974.6:ENST00000441501.5:ENST00000438962.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	52	2	2.39556	2.73747	3.07938	0.00141347	4.22401e-4	0.0340865	0.0183838
chr7	128565621	128565721	3407700	0	+	0.37	(0.35,0.378]	chr7	318333	315	INTRON	INTRON	ENSG00000280828	ENSG00000280828.1	ENST00000479267.2	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	4	78	2	2.59656	2.737455	2.87835	0.00638551	0.00160563	0.0693551	0.0367961
chr1	45610553	45610649	93477	0	+	0.416667	(0.408,0.44]	chr1	12614	1	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:INTRON	NASP	ENSG00000132780.17	ENST00000437901.6:ENST00000537798.5:ENST00000437362.6:ENST00000350030.8:ENST00000527359.5:ENST00000453748.5:ENST00000525515.5:ENST00000528238.5:ENST00000372052.8:ENST00000351223.7:ENST00000530073.5:ENST00000481782.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	13	211	2	2.33773	2.73743	3.13713	5.28147e-4	1.04765e-5	0.0211857	0.0023592
chr5	38940808	38940908	2604262	0	-	0.37	(0.35,0.378]	chr5	247703	30	UTR3	UTR3:EXON_MRNA	RICTOR	ENSG00000164327.13	ENST00000357387.8:ENST00000511516.5:ENST00000296782.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	126	2	1.68567	2.7373950000000002	3.78912	0.0066179	4.25686e-4	0.0738715	0.0189958
chr12	120900278	120900378	5435867	0	-	0.44	(0.408,0.44]	chr12	519663	648	INTRON	INTRON	SPPL3	ENSG00000157837.16	ENST00000353487.7:ENST00000536996.5:ENST00000543608.5:ENST00000543854.5	protein_coding	protein_coding	protein_coding	protein_coding	4	72	2	2.49218	2.73739	2.9826	0.00855168	9.23082e-4	0.0780217	0.0278392
chr16	16583787	16583887	6311700	0	+	0.46	(0.44,0.476]	chr16	604098	838	INTRON	INTRON	ENSG00000260126	ENSG00000260126.2	ENST00000567465.2	lncRNA	lncRNA	lncRNA	lncRNA	2	42	2	2.39604	2.73733	3.07862	0.0404291	0.0060153	0.161534	0.0674604
chr15	41114675	41114775	6153224	0	-	0.41	(0.408,0.44]	chr15	585431	180	INTRON	INTRON	INO80	ENSG00000128908.18	ENST00000648947.1:ENST00000401393.7:ENST00000558357.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	40	2	2.6542	2.73731	2.82042	0.0227514	0.0120121	0.117618	0.0962115
chr16	84664413	84664512	6409864	0	+	0.434343	(0.408,0.44]	chr16	615249	24	UTR3	UTR3:EXON_MRNA	KLHL36	ENSG00000135686.13	ENST00000564996.6:ENST00000325279.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	40	2	2.6542	2.73731	2.82042	0.0227514	0.0120121	0.117618	0.0962115
chr2	180992843	180992943	936094	0	+	0.44	(0.408,0.44]	chr2	102627	29	INTRON	INTRON	UBE2E3	ENSG00000170035.16	ENST00000602303.5:ENST00000602959.5:ENST00000602479.5:ENST00000392415.6:ENST00000602291.5:ENST00000410062.9:ENST00000602499.5:ENST00000602710.5:ENST00000602762.5:ENST00000602888.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	40	2	2.6542	2.73731	2.82042	0.0227514	0.0120121	0.117618	0.0962115
chr4	127943152	127943251	2238343	0	-	0.414141	(0.408,0.44]	chr4	219086	6	INTRON	INTRON	MFSD8	ENSG00000164073.11	ENST00000296468.8:ENST00000641686.2:ENST00000641186.1:ENST00000641774.1:ENST00000641748.1:ENST00000641508.1:ENST00000641690.1:ENST00000641928.1:ENST00000641464.1:ENST00000641092.1:ENST00000641397.1:ENST00000641393.1:ENST00000641025.1:ENST00000641509.1:ENST00000642034.1:ENST00000641178.1:ENST00000641147.1:ENST00000641753.1:ENST00000641434.1:ENST00000641482.1:ENST00000641133.1:ENST00000515130.6:ENST00000641332.1:ENST00000641870.1:ENST00000641949.1:ENST00000641228.1:ENST00000641590.1:ENST00000641843.1:ENST00000642078.1:ENST00000641882.1:ENST00000641742.1:ENST00000641658.1:ENST00000513559.6:ENST00000509826.2:ENST00000642042.1:ENST00000641340.1:ENST00000641538.1:ENST00000641369.1:ENST00000642121.1:ENST00000641243.1:ENST00000505284.6:ENST00000641134.1:ENST00000641695.1:ENST00000641503.1:ENST00000641743.1:ENST00000641776.1:ENST00000641264.1:ENST00000642143.1:ENST00000508441.2:ENST00000641558.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	40	2	2.6542	2.73731	2.82042	0.0227514	0.0120121	0.117618	0.0962115
chr7	96703735	96703834	3578515	0	-	0.424242	(0.408,0.44]	chr7	333204	65	INTRON	INTRON	SEM1	ENSG00000127922.10	ENST00000466986.5:ENST00000617133.4:ENST00000618105.4:ENST00000619259.4:ENST00000613919.4:ENST00000417009.5:ENST00000623693.3:ENST00000623498.3:ENST00000444799.5:ENST00000449279.5:ENST00000488005.5:ENST00000413065.5:ENST00000248566.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	40	2	2.6542	2.73731	2.82042	0.0227514	0.0120121	0.117618	0.0962115
chr7	96276595	96276695	3575800	0	-	0.44	(0.408,0.44]	chr7	333065	413	INTRON	INTRON	SLC25A13	ENSG00000004864.14	ENST00000265631.10:ENST00000416240.6:ENST00000472162.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	72	2	2.64944	2.737275	2.82511	0.00481947	0.00189528	0.060277	0.0402736
chr2	158629871	158629970	898891	0	+	0.525253	(0.515,0.57]	chr2	99408	41	INTRON	INTRON	PKP4	ENSG00000144283.23	ENST00000389759.8:ENST00000426248.7:ENST00000389757.7:ENST00000452162.5:ENST00000421462.5:ENST00000481115.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	74	2	2.20213	2.7372699999999996	3.27241	0.00853365	1.80226e-4	0.0780043	0.0116696
chr13	98001645	98001736	5520994	0	+	0.516484	(0.515,0.57]	chr13	527901	1	EXON_MRNA	EXON_MRNA:INTRON	IPO5	ENSG00000065150.21	ENST00000651721.2:ENST00000261574.10:ENST00000357602.7:ENST00000490680.5:ENST00000469360.5:ENST00000491555.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	84	2	2.51725	2.737255	2.9572600000000002	0.00108918	8.36453e-4	0.0303873	0.0263691
chr14	102662500	102662600	5823232	0	+	0.54	(0.515,0.57]	chr14	552490	688	INTRON	INTRON	RCOR1	ENSG00000089902.10	ENST00000262241.7	protein_coding	protein_coding	protein_coding	protein_coding	6	72	2	2.21892	2.737195	3.25547	0.00261721	0.00198472	0.0455413	0.0411469
chr1	245966499	245966599	675295	0	-	0.27	[0,0.28]	chr1	79709	105	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000493441.5:ENST00000488153.5:ENST00000492487.5:ENST00000391836.3:ENST00000464398.1:ENST00000453676.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	77	2	2.09899	2.737145	3.3753	0.0371453	0.00242466	0.139304	0.0454587
chr14	58297954	58298044	5904744	0	-	0.577778	(0.57,1]	chr14	560855	1	EXON_LNCRNA	EXON_LNCRNA	PSMA3-AS1	ENSG00000257621.9	ENST00000554360.5:ENST00000556002.5:ENST00000555275.5:ENST00000554378.5:ENST00000555707.5:ENST00000556400.5:ENST00000557660.5:ENST00000553657.5:ENST00000555037.1:ENST00000551597.6:ENST00000554309.1	lncRNA	lncRNA	lncRNA	lncRNA	13	107	2	2.48744	2.73714	2.98684	6.53733e-5	1.3143e-5	0.00669216	0.00286967
chr1	156525698	156525797	567024	0	-	0.292929	(0.28,0.32]	chr1	68055	4	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	IQGAP3	ENSG00000183856.11	ENST00000491900.1:ENST00000361170.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	121	2	1.68891	2.73713	3.78535	0.0132814	6.21154e-4	0.100261	0.0229151
chr16	15140253	15140353	6450858	0	-	0.52	(0.515,0.57]	chr16	621698	14	INTRON	INTRON	PKD1P6	ENSG00000250251.6	ENST00000343738.10	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	5	74	2	2.50953	2.7371	2.96467	0.0023952	8.94279e-4	0.0440612	0.0273458
chr20	3914530	3914630	7227156	0	+	0.5	(0.476,0.515]	chr20	734510	15	INTRON	INTRON	PANK2	ENSG00000125779.24	ENST00000497424.5:ENST00000316562.9:ENST00000495692.5:ENST00000610179.7:ENST00000643504.2:ENST00000336066.8:ENST00000646394.1:ENST00000621507.1:ENST00000464452.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	71	2	2.58253	2.7370900000000002	2.89165	0.00600101	0.00142068	0.0674604	0.034662
chr8	47786414	47786513	3943932	0	-	0.313131	(0.28,0.32]	chr8	361559	7	INTRON	INTRON	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7	protein_coding	protein_coding	protein_coding	protein_coding	3	68	2	2.24061	2.73708	3.23355	0.0194267	0.004869	0.119831	0.0607461
chr15	44403154	44403254	6014220	0	+	0.47	(0.44,0.476]	chr15	572895	1	SS5_PROX	SS5_PROX:INTRON	GOLM2	ENSG00000166734.20	ENST00000299957.11:ENST00000650436.1:ENST00000345795.6:ENST00000558847.1:ENST00000561305.1	protein_coding	protein_coding	protein_coding	protein_coding	3	55	2	2.51554	2.73707	2.9586	0.00777207	0.00758318	0.0773151	0.0757731
chrX	53681392	53681491	7821858	0	-	0.363636	(0.35,0.378]	chrX	798244	3	INTRON	INTRON	HUWE1	ENSG00000086758.16	ENST00000262854.11:ENST00000342160.7:ENST00000218328.12:ENST00000446750.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	90	2	1.63291	2.7370550000000002	3.8412	0.0289396	1.97447e-4	0.1274	0.0122531
chr1	42683966	42684065	83958	0	+	0.30303	(0.28,0.32]	chr1	11020	1	INTRON	INTRON	YBX1	ENSG00000065978.19	ENST00000321358.12:ENST00000332220.10:ENST00000436427.1:ENST00000467957.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	131	2	2.03152	2.73696	3.4424	0.00983556	2.60871e-4	0.0877296	0.0149004
chr14	30560659	30560756	5674400	0	+	0.298969	(0.28,0.32]	chr14	540495	15	UTR5	UTR5:EXON_MRNA:INTRON	G2E3	ENSG00000092140.16	ENST00000206595.11:ENST00000438909.6:ENST00000544007.5:ENST00000550944.5:ENST00000552488.1:ENST00000648008.1:ENST00000553504.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	67	2	2.55521	2.73686	2.91851	0.0130672	0.0067419	0.093385	0.0739405
chr10	124778670	124778770	4712415	0	-	0.44	(0.408,0.44]	chr10	434817	35	INTRON	INTRON	EEF1AKMT2	ENSG00000203791.15	ENST00000652548.1:ENST00000466270.5:ENST00000368836.7:ENST00000464099.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	179	2	1.99307	2.7368449999999998	3.48062	0.00380257	2.66642e-6	0.0542786	0.00104918
chr6	57184982	57185081	2879015	0	+	0.313131	(0.28,0.32]	chr6	273346	9	UTR3	UTR3:EXON_MRNA	BAG2	ENSG00000112208.11	ENST00000370693.5	protein_coding	protein_coding	protein_coding	protein_coding	3	67	2	2.42868	2.736765	3.04485	0.0105331	0.00894006	0.0908969	0.0799922
chr2	227529097	227529196	1026234	0	+	0.333333	(0.32,0.35]	chr2	109589	38	INTRON	INTRON	AGFG1	ENSG00000173744.18	ENST00000409979.6:ENST00000310078.13:ENST00000409315.5:ENST00000373671.7:ENST00000409171.5:ENST00000456594.1	protein_coding	protein_coding	protein_coding	protein_coding	4	77	2	2.62513	2.736625	2.84812	0.0147575	0.00156724	0.0983813	0.0365592
chr2	26034608	26034708	713102	0	+	0.53	(0.515,0.57]	chr2	82434	1	CDS_START	CDS_START:CDS:EXON_MRNA	RAB10	ENSG00000084733.11	ENST00000264710.5:ENST00000495146.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	16	216	2	2.31818	2.736555	3.15493	2.18769e-4	2.81522e-6	0.0135522	0.00107271
chr6	32970339	32970433	2846423	0	+	0.606383	(0.57,1]	chr6	268429	2	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	BRD2:ENSG00000223837	ENSG00000204256.14:ENSG00000223837.2	ENST00000374825.9:ENST00000469132.2:ENST00000679179.1:ENST00000678778.1:ENST00000496118.2:ENST00000449085.4:ENST00000677331.1:ENST00000456339.5:ENST00000678250.1:ENST00000415875.2:ENST00000580234.1:ENST00000677085.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA:processed_transcript	6	55	2	2.52633	2.7365000000000004	2.94667	0.0018535	1.7758e-4	0.039946	0.0121697
chr13	98564794	98564894	5643670	0	-	0.44	(0.408,0.44]	chr13	537505	429	INTRON	INTRON	STK24	ENSG00000102572.15	ENST00000539966.6:ENST00000397517.6:ENST00000491878.5:ENST00000481288.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	73	2	2.64829	2.7364499999999996	2.82461	0.00400062	0.00241819	0.057767	0.0442901
chr8	54013674	54013773	3953222	0	-	0.222222	[0,0.28]	chr8	362572	28	INTRON	INTRON	TCEA1	ENSG00000187735.15	ENST00000396401.7:ENST00000521604.7:ENST00000521086.6:ENST00000522635.5:ENST00000522397.5:ENST00000640382.1:ENST00000640041.1:ENST00000520534.5:ENST00000518310.5:ENST00000517351.5:ENST00000521836.1:ENST00000518784.5:ENST00000519704.1:ENST00000638322.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	79	2	2.59548	2.73639	2.8773	0.0346067	0.00226728	0.136649	0.0437013
chr11	59798485	59798584	4795583	0	+	0.454545	(0.44,0.476]	chr11	444014	7	INTRON	INTRON	STX3	ENSG00000166900.17	ENST00000641815.1:ENST00000337979.9:ENST00000533637.5:ENST00000633708.1:ENST00000529177.5:ENST00000530221.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	53	2	2.49823	2.73637	2.97451	0.00853825	0.00718224	0.0780043	0.0756118
chr15	41732928	41733027	6007593	0	+	0.444444	(0.44,0.476]	chr15	571692	32	INTRON	INTRON	MGA	ENSG00000174197.18	ENST00000545763.6:ENST00000570161.6:ENST00000566586.6:ENST00000219905.13	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	53	2	2.49823	2.73637	2.97451	0.00853825	0.00718224	0.0780043	0.0756118
chr11	67429988	67430087	4815100	0	+	0.555556	(0.515,0.57]	chr11	448443	5	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	RPS6KB2	ENSG00000175634.15	ENST00000530623.5:ENST00000556575.5:ENST00000312629.10:ENST00000524814.5:ENST00000524934.5:ENST00000420069.3:ENST00000528964.5:ENST00000525088.5:ENST00000525996.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	62	2	2.38476	2.736325	3.08789	0.0110593	4.83127e-4	0.0873897	0.0199261
chr16	87764565	87764665	6538671	0	-	0.46	(0.44,0.476]	chr16	633582	1	SS5_PROX	SS5_PROX:INTRON	KLHDC4	ENSG00000104731.14	ENST00000567298.5:ENST00000270583.10:ENST00000347925.9:ENST00000353170.9:ENST00000562155.5:ENST00000622456.4:ENST00000562261.1:ENST00000564484.5:ENST00000569747.5:ENST00000564396.5:ENST00000568502.1:ENST00000561825.1:ENST00000568338.1:ENST00000563845.5:ENST00000566561.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	53	2	2.44514	2.736325	3.02751	0.0087381	0.00715968	0.0845538	0.0723634
chr7	105244514	105244614	3602455	0	-	0.56	(0.515,0.57]	chr7	336137	376	INTRON	INTRON	SRPK2	ENSG00000135250.17	ENST00000393651.8:ENST00000357311.7:ENST00000489828.5:ENST00000482897.5:ENST00000460391.5:ENST00000462282.5:ENST00000465112.5:ENST00000482862.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	74	2	2.41022	2.7363049999999998	3.06239	0.00332441	6.62949e-4	0.0528673	0.0234815
chr12	6585767	6585864	5259420	0	-	0.484536	(0.476,0.515]	chr12	500731	18	INTRON	INTRON	CHD4	ENSG00000111642.16	ENST00000645022.1:ENST00000544040.7:ENST00000544484.6:ENST00000357008.7:ENST00000642810.1:ENST00000642637.1:ENST00000643335.1:ENST00000643815.1:ENST00000646806.1:ENST00000644137.1:ENST00000642879.1:ENST00000645645.1:ENST00000642594.1:ENST00000646360.1:ENST00000646268.1:ENST00000645095.1:ENST00000644352.1:ENST00000647483.1:ENST00000646608.1:ENST00000643538.1:ENST00000645005.1:ENST00000644801.1:ENST00000644289.1:ENST00000646366.1:ENST00000644356.1:ENST00000540960.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	53	2	2.58615	2.736225	2.8863	0.0111679	0.00515536	0.0877435	0.0650394
chr7	6400785	6400882	3273290	0	+	0.484536	(0.476,0.515]	chr7	304337	2	INTRON	INTRON	RAC1	ENSG00000136238.19	ENST00000348035.9:ENST00000356142.4:ENST00000488373.5:ENST00000497741.5:ENST00000473564.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	53	2	2.58615	2.736225	2.8863	0.0111679	0.00515536	0.0877435	0.0650394
chr11	2973661	2973759	4891805	0	-	0.357143	(0.35,0.378]	chr11	458333	10	INTRON	INTRON	NAP1L4	ENSG00000205531.13	ENST00000620138.4:ENST00000380542.9:ENST00000526115.5:ENST00000532325.6:ENST00000448187.5:ENST00000399614.6:ENST00000430811.5:ENST00000529361.5:ENST00000528968.5:ENST00000530064.5:ENST00000526842.5:ENST00000531291.5:ENST00000455338.6:ENST00000534372.1	protein_coding	protein_coding	protein_coding	protein_coding	4	78	2	2.48623	2.73615	2.98607	0.00938784	9.86191e-4	0.0817766	0.0288537
chr11	3370542	3370642	4893767	0	-	0.43	(0.408,0.44]	chr11	458684	2	SS5_PROX	SS5_PROX:INTRON	ZNF195	ENSG00000005801.18	ENST00000528796.5:ENST00000399602.9:ENST00000354599.10:ENST00000343338.11:ENST00000620374.4:ENST00000649622.1:ENST00000429541.6:ENST00000005082.13:ENST00000526601.5:ENST00000438262.6:ENST00000528410.5:ENST00000528218.5:ENST00000529789.5:ENST00000525313.6:ENST00000533036.5:ENST00000529228.5:ENST00000529678.5:ENST00000427810.6:ENST00000534569.5:ENST00000524857.5:ENST00000530643.5:ENST00000618467.4:ENST00000330692.11:ENST00000525502.5:ENST00000526501.5:ENST00000532539.1:ENST00000529085.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	54	2	2.26792	2.736145	3.20437	0.0179973	0.00306596	0.106756	0.0509893
chr8	37873679	37873762	3935684	0	-	0.421687	(0.408,0.44]	chr8	360563	1	INTRON	INTRON	RAB11FIP1	ENSG00000156675.16	ENST00000330843.9:ENST00000287263.8:ENST00000522727.5:ENST00000524118.1	protein_coding	protein_coding	protein_coding	protein_coding	3	54	2	2.26792	2.736145	3.20437	0.0179973	0.00306596	0.106756	0.0509893
chr14	102656102	102656202	5823168	0	+	0.37	(0.35,0.378]	chr14	552490	624	INTRON	INTRON	RCOR1	ENSG00000089902.10	ENST00000262241.7	protein_coding	protein_coding	protein_coding	protein_coding	4	78	2	2.63153	2.73605	2.84057	0.00562761	0.00189462	0.0653997	0.0402736
chr16	87859409	87859509	6538996	0	-	0.51	(0.476,0.515]	chr16	633643	72	INTRON	INTRON	SLC7A5	ENSG00000103257.9	ENST00000261622.5:ENST00000565644.5	protein_coding	protein_coding	protein_coding	protein_coding	4	71	2	2.54157	2.736015	2.93046	0.00697457	0.00118985	0.0718189	0.031662
chr4	82425459	82425558	2177579	0	-	0.343434	(0.32,0.35]	chr4	214167	30	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	HNRNPDL	ENSG00000152795.18	ENST00000621267.4:ENST00000614627.4:ENST00000295470.10:ENST00000507721.5:ENST00000502762.4:ENST00000349655.8:ENST00000602300.5:ENST00000630114.2:ENST00000630827.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	116	2	2.68807	2.73599	2.78391	0.00347285	4.78715e-4	0.052042	0.0198328
chr19	4425470	4425570	7001996	0	+	0.5	(0.476,0.515]	chr19	694544	12	INTRON	INTRON	CHAF1A	ENSG00000167670.16	ENST00000301280.10:ENST00000587739.1:ENST00000585371.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	71	2	2.66112	2.7359400000000003	2.81076	0.0044598	0.00203568	0.0592169	0.0417667
chr10	60779356	60779451	4435775	0	+	0.368421	(0.35,0.378]	chr10	409163	3	INTRON	INTRON	CDK1	ENSG00000170312.17	ENST00000519078.6:ENST00000475504.6:ENST00000316629.8:ENST00000519760.1:ENST00000395284.8:ENST00000448257.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	11	182	2	2.49219	2.73584	2.97949	4.02507e-4	1.5057e-4	0.0185763	0.0106137
chr20	35792200	35792300	7263085	0	+	0.53	(0.515,0.57]	chr20	738060	92	INTRON	INTRON	PHF20	ENSG00000025293.17	ENST00000461122.5:ENST00000461405.1:ENST00000374012.8:ENST00000452270.5:ENST00000374000.8:ENST00000339089.10:ENST00000481202.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	101	2	2.54655	2.735805	2.92506	8.595e-4	2.50659e-4	0.0267428	0.0140705
chr7	152286576	152286676	3679788	0	-	0.37	(0.35,0.378]	chr7	341622	2	SS3_PROX	SS3_PROX:INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000684262.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	108	2	2.06294	2.7357250000000004	3.40851	0.00222761	0.00205747	0.0435144	0.0409869
chr1	235213068	235213168	662696	0	-	0.25	[0,0.28]	chr1	78465	166	INTRON	INTRON	ARID4B	ENSG00000054267.22	ENST00000349213.7:ENST00000366603.6:ENST00000264183.9:ENST00000421364.5:ENST00000491632.5:ENST00000444620.2:ENST00000471257.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	58	2	2.20927	2.735685	3.2621000000000002	0.0794763	0.00367113	0.19979	0.056059199999999997
chr3	185804361	185804461	1886142	0	-	0.47	(0.44,0.476]	chr3	188573	1057	INTRON	INTRON	IGF2BP2	ENSG00000073792.16	ENST00000382199.7:ENST00000346192.7:ENST00000457616.6:ENST00000421047.3:ENST00000461957.5:ENST00000493302.5:ENST00000466476.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	143	2	2.09713	2.735675	3.37422	0.00320709	2.11504e-5	0.0507087	0.00355554
chr2	38307784	38307884	1098634	0	-	0.37	(0.35,0.378]	chr2	117813	71	INTRON	INTRON	ATL2	ENSG00000119787.14	ENST00000378954.9:ENST00000406122.5:ENST00000405384.6:ENST00000402054.5:ENST00000419554.6:ENST00000651368.1:ENST00000452935.6:ENST00000629272.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	119	2	2.2519	2.73564	3.21938	0.0020199	4.98221e-4	0.0416115	0.0206993
chr20	35737167	35737267	7336506	0	-	0.54	(0.515,0.57]	chr20	747495	2	INTRON	INTRON	RBM39	ENSG00000131051.24	ENST00000253363.11:ENST00000639702.1:ENST00000656873.1:ENST00000463004.5:ENST00000361162.10:ENST00000461283.5:ENST00000403542.6:ENST00000338163.10:ENST00000528062.7:ENST00000429968.5:ENST00000444878.5:ENST00000665058.1:ENST00000374038.7:ENST00000412738.5:ENST00000434927.5:ENST00000425184.5:ENST00000481037.5:ENST00000455343.5:ENST00000416108.5:ENST00000426951.5:ENST00000477334.1:ENST00000442447.5:ENST00000449489.5:ENST00000433027.5:ENST00000487604.1:ENST00000453310.5:ENST00000416529.5:ENST00000397370.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	25	312	2	2.40178	2.735595	3.06941	1.6963e-5	4.91862e-6	0.00312918	0.00163836
chr22	20120513	20120609	7478620	0	+	0.604167	(0.57,1]	chr22	762785	10	INTRON	INTRON	RANBP1	ENSG00000099901.17	ENST00000435265.5:ENST00000432879.5:ENST00000430524.6:ENST00000402752.5:ENST00000488484.1:ENST00000331821.7:ENST00000411892.5:ENST00000416427.5:ENST00000421656.5:ENST00000423859.5:ENST00000418705.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	47	2	2.1643	2.7355650000000002	3.30683	0.00941704	1.13407e-4	0.0861183	0.00957524
chr1	28507571	28507663	57184	0	+	0.423913	(0.408,0.44]	chr1	7380	1	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	RCC1:SNHG3	ENSG00000180198.17:ENSG00000242125.3	ENST00000398958.6:ENST00000649185.1:ENST00000413987.1:ENST00000427469.5:ENST00000683442.1:ENST00000447507.1:ENST00000434290.6:ENST00000373833.10:ENST00000437681.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	129	2198	2	2.663	2.7355549999999997	2.80811	6.04212e-7	5.8223600000000005e-07	4.52668e-4	4.14367e-4
chr7	67280330	67280429	3541639	0	-	0.525253	(0.515,0.57]	chr7	330372	56	INTRON	INTRON	PMS2P4	ENSG00000067601.9	ENST00000685171.1:ENST00000688358.1:ENST00000692496.1:ENST00000685583.1:ENST00000688710.1:ENST00000684859.1:ENST00000685318.1:ENST00000691713.1:ENST00000686389.1:ENST00000690253.1:ENST00000688815.1:ENST00000692171.1:ENST00000692360.1:ENST00000689281.1:ENST00000690241.1:ENST00000689629.1:ENST00000689043.1:ENST00000688809.1:ENST00000687432.1:ENST00000687680.1:ENST00000686900.1:ENST00000691782.1:ENST00000693356.1:ENST00000691384.1:ENST00000690440.1:ENST00000686719.1:ENST00000686561.1:ENST00000688238.1:ENST00000687826.1:ENST00000689908.1:ENST00000689385.1:ENST00000689855.1:ENST00000691806.1:ENST00000689028.1:ENST00000688599.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	16	210	2	2.29455	2.7355150000000004	3.17648	1.98513e-4	5.56415e-6	0.0129178	0.00163971
chr9	135935380	135935477	4372296	0	-	0.556701	(0.515,0.57]	chr9	402502	15	INTRON	INTRON	UBAC1	ENSG00000130560.9	ENST00000371756.4:ENST00000489050.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	88	2	2.57713	2.73546	2.89379	0.00176427	2.98479e-4	0.0376652	0.0154922
chr21	18736123	18736223	7435164	0	-	0.47	(0.44,0.476]	chr21	758112	1235	INTRON	INTRON	MIR548XHG	ENSG00000224141.6	ENST00000671206.1:ENST00000437492.6:ENST00000355189.7:ENST00000653218.1:ENST00000656413.1:ENST00000414582.1	lncRNA	lncRNA	lncRNA	lncRNA	4	78	2	2.27304	2.735445	3.19785	0.0158915	4.51048e-4	0.109464	0.0196417
chr1	1558952	1559052	360163	0	-	0.38	(0.378,0.408]	chr1	41847	126	INTRON	INTRON	SSU72	ENSG00000160075.12	ENST00000291386.4:ENST00000378725.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	68	2	1.89251	2.73536	3.57821	0.0251428	9.60401e-4	0.133404	0.0282401
chr1	108929002	108929102	518806	0	-	0.34	(0.32,0.35]	chr1	60851	32	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	CLCC1	ENSG00000121940.17	ENST00000690509.1:ENST00000687328.1:ENST00000685014.1:ENST00000685540.1:ENST00000686576.1:ENST00000688070.1:ENST00000691513.1:ENST00000686821.1:ENST00000692511.1:ENST00000689479.1:ENST00000687646.1:ENST00000687998.1:ENST00000687226.1:ENST00000693336.1:ENST00000689991.1:ENST00000687591.1:ENST00000691777.1:ENST00000690756.1:ENST00000688778.1:ENST00000685104.1:ENST00000689103.1:ENST00000687734.1:ENST00000686434.1:ENST00000685497.1:ENST00000691342.1:ENST00000686776.1:ENST00000692342.1:ENST00000689351.1:ENST00000692584.1:ENST00000692775.1:ENST00000687134.1:ENST00000690707.1:ENST00000687675.1:ENST00000688298.1:ENST00000675018.1:ENST00000690781.1:ENST00000691556.1:ENST00000689189.1:ENST00000687099.1:ENST00000685791.1:ENST00000687865.1:ENST00000687449.1:ENST00000688285.1:ENST00000686817.1:ENST00000369968.7:ENST00000674992.1:ENST00000675001.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	46	2	2.4458	2.73525	3.0247	0.0425977	0.00671684	0.148082	0.0738715
chr1	184872351	184872451	602026	0	-	0.35	(0.32,0.35]	chr1	71746	39	INTRON	INTRON	NIBAN1	ENSG00000135842.17	ENST00000367511.4	protein_coding	protein_coding	protein_coding	protein_coding	2	46	2	2.4458	2.73525	3.0247	0.0425977	0.00671684	0.148082	0.0738715
chr1	204517308	204517407	297424	0	+	0.343434	(0.32,0.35]	chr1	34260	4	INTRON	INTRON	MDM4	ENSG00000198625.14	ENST00000367183.7:ENST00000391947.6:ENST00000454264.6:ENST00000612738.4:ENST00000614459.4:ENST00000616250.4:ENST00000470797.5:ENST00000367182.8:ENST00000463049.5:ENST00000470908.5:ENST00000471783.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	46	2	2.4458	2.73525	3.0247	0.0425977	0.00671684	0.148082	0.0738715
chr1	35921694	35921794	71049	0	+	0.42	(0.408,0.44]	chr1	9124	21	UTR3	UTR3:EXON_MRNA	AGO1	ENSG00000092847.13	ENST00000373204.6:ENST00000674426.1:ENST00000674304.1	protein_coding	protein_coding	protein_coding	protein_coding	4	66	2	1.8749	2.73523	3.59556	0.0264246	8.33275e-4	0.133676	0.0266389
chr14	102156558	102156658	5821449	0	+	0.52	(0.515,0.57]	chr14	552333	160	INTRON	INTRON	WDR20	ENSG00000140153.18	ENST00000557485.5:ENST00000335263.9:ENST00000424963.6:ENST00000322340.9:ENST00000556807.1:ENST00000555879.5:ENST00000561154.1:ENST00000342702.8:ENST00000558567.5:ENST00000299135.6:ENST00000454394.2:ENST00000556094.1:ENST00000556511.2:ENST00000557186.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	47	2	2.68833	2.735205	2.78208	0.0184931	0.00209264	0.108861	0.0424943
chr1	23968254	23968354	402040	0	-	0.3	(0.28,0.32]	chr1	48275	4	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	SRSF10	ENSG00000188529.15	ENST00000492112.3:ENST00000344989.10:ENST00000341154.10:ENST00000453840.7:ENST00000484146.6:ENST00000473858.5:ENST00000374452.9:ENST00000374453.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	50	2	2.73077	2.73511	2.73945	0.0220748	0.017681	0.115395	0.11319
chr21	21151969	21152068	7380529	0	+	0.292929	(0.28,0.32]	chr21	752602	1530	INTRON	INTRON	NCAM2	ENSG00000154654.15	ENST00000400546.6	protein_coding	protein_coding	protein_coding	protein_coding	2	50	2	2.73077	2.73511	2.73945	0.0220748	0.017681	0.115395	0.11319
chr12	110401034	110401134	5409172	0	-	0.42	(0.408,0.44]	chr12	516463	42	INTRON	INTRON	ANAPC7:ENSG00000258210	ENSG00000196510.14:ENSG00000258210.1	ENST00000455511.9:ENST00000450008.3:ENST00000552170.2:ENST00000550231.1:ENST00000464697.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay	14	230	2	2.48245	2.73502	2.98759	2.40582e-4	1.37172e-5	0.0142561	0.00276518
chr1	204405800	204405897	621980	0	-	0.391753	(0.378,0.408]	chr1	73936	26	UTR3	UTR3:EXON_MRNA:INTRON	PPP1R15B	ENSG00000158615.10	ENST00000693720.1:ENST00000367188.5:ENST00000689921.1:ENST00000690849.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	183	2	2.56264	2.734995	2.90735	2.02698e-4	1.31786e-4	0.0129814	0.00990153
chr1	15637120	15637218	33682	0	+	0.326531	(0.32,0.35]	chr1	4099	29	INTRON	INTRON	DDI2	ENSG00000197312.12	ENST00000480945.6:ENST00000320153.10:ENST00000483899.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	46	2	2.68921	2.73497	2.78073	0.0230336	0.01481	0.118056	0.106702
chr2	111425908	111426008	1211109	0	-	0.34	(0.32,0.35]	chr2	128897	476	INTRON	INTRON	MIR4435-2HG	ENSG00000172965.17	ENST00000645030.2:ENST00000642191.1:ENST00000673798.1:ENST00000645051.2:ENST00000673649.1:ENST00000669658.1:ENST00000669917.1:ENST00000661559.1:ENST00000653687.1:ENST00000667670.1:ENST00000609220.2:ENST00000656760.1:ENST00000609902.6:ENST00000666683.1:ENST00000674070.1:ENST00000662335.1:ENST00000664422.1:ENST00000673775.1:ENST00000674092.1:ENST00000673958.1:ENST00000658936.1:ENST00000662635.1:ENST00000666204.1:ENST00000659458.1:ENST00000664443.1:ENST00000670295.1:ENST00000661655.1:ENST00000666390.1:ENST00000659079.1:ENST00000660442.1:ENST00000664009.1:ENST00000439362.6:ENST00000654473.1:ENST00000664999.1:ENST00000673728.1:ENST00000659791.1:ENST00000666144.1:ENST00000659933.1:ENST00000670715.1:ENST00000653568.1:ENST00000643013.1:ENST00000673866.1:ENST00000443467.6:ENST00000669875.1:ENST00000673653.1:ENST00000673988.1:ENST00000661945.1:ENST00000669515.1:ENST00000431385.6:ENST00000656416.1:ENST00000674037.1:ENST00000432818.5:ENST00000674013.1:ENST00000444301.5:ENST00000673964.1:ENST00000673845.1:ENST00000673756.1:ENST00000673960.1:ENST00000673804.1:ENST00000673632.1:ENST00000453478.2:ENST00000673937.1:ENST00000673654.1	lncRNA	lncRNA	lncRNA	lncRNA	2	46	2	2.68921	2.73497	2.78073	0.0230336	0.01481	0.118056	0.106702
chr6	52279899	52279999	3105865	0	-	0.34	(0.32,0.35]	chr6	290812	3	SS3_PROX	SS3_PROX:INTRON	MCM3	ENSG00000112118.20	ENST00000616552.4:ENST00000229854.12:ENST00000596288.7:ENST00000419835.8	protein_coding	protein_coding	protein_coding	protein_coding	2	46	2	2.68921	2.73497	2.78073	0.0230336	0.01481	0.118056	0.106702
chr20	47294979	47295079	7348890	0	-	0.38	(0.378,0.408]	chr20	749329	2	SS3_PROX	SS3_PROX:INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000467200.6:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000468376.2:ENST00000435836.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	124	2	2.56838	2.7347	2.90102	0.0010901	3.47934e-4	0.0303873	0.0166215
chrX	154786700	154786800	7915415	0	-	0.52	(0.515,0.57]	chrX	806146	3	SS3_PROX	SS3_PROX:INTRON	MPP1	ENSG00000130830.15	ENST00000369534.8:ENST00000413259.7:ENST00000439370.5:ENST00000393531.5:ENST00000453245.5:ENST00000494170.1:ENST00000462825.5:ENST00000393529.5:ENST00000475943.5:ENST00000428488.1:ENST00000488754.5:ENST00000417435.5:ENST00000488694.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	150	2	2.14892	2.734635	3.32035	0.00139353	5.71425e-6	0.0340865	0.00166334
chr11	62883347	62883438	4799617	0	+	0.406593	(0.378,0.408]	chr11	444829	1	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	SLC3A2	ENSG00000168003.18	ENST00000680729.1:ENST00000680002.1:ENST00000681467.1:ENST00000377890.6:ENST00000538084.2:ENST00000681569.1:ENST00000680725.1:ENST00000377891.6:ENST00000377889.6:ENST00000681215.1:ENST00000535296.5:ENST00000680631.1:ENST00000544377.2:ENST00000680610.1:ENST00000680297.1:ENST00000680134.1:ENST00000681232.1:ENST00000681657.1:ENST00000541425.6:ENST00000679908.1:ENST00000681563.1:ENST00000338663.12:ENST00000680654.1:ENST00000681107.1:ENST00000541649.2:ENST00000538682.6:ENST00000536981.6:ENST00000539891.6:ENST00000679594.1:ENST00000535768.2:ENST00000537508.6:ENST00000537839.5:ENST00000546253.5:ENST00000457660.6:ENST00000546312.5:ENST00000542922.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	55	2	2.51464	2.734615	2.95459	0.00957623	0.00684341	0.0820838	0.0748032
chr16	22493816	22493916	6322543	0	+	0.33	(0.32,0.35]	chr16	605439	16	INTRON	INTRON	NPIPB5	ENSG00000243716.11	ENST00000415654.5:ENST00000415833.6:ENST00000546168.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	139	2	2.15713	2.7346	3.31207	0.00218809	3.78985e-4	0.0435144	0.0180834
chr3	47839282	47839381	1420342	0	+	0.474747	(0.44,0.476]	chr3	149238	83	INTRON	INTRON	DHX30	ENSG00000132153.15	ENST00000395745.6:ENST00000445061.6:ENST00000441384.5:ENST00000348968.8:ENST00000446256.6:ENST00000619982.4:ENST00000457607.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	176	2	2.25418	2.734585	3.21499	0.00107584	1.63578e-5	0.0301994	0.00305192
chr7	123556725	123556822	3631963	0	-	0.381443	(0.378,0.408]	chr7	337518	22	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	NDUFA5	ENSG00000128609.16	ENST00000355749.7:ENST00000471770.5:ENST00000678090.1:ENST00000679163.1:ENST00000676614.1:ENST00000677251.1:ENST00000676730.1:ENST00000677306.1:ENST00000676516.1:ENST00000677391.1:ENST00000677264.1:ENST00000611607.4:ENST00000618945.4:ENST00000492549.6:ENST00000678032.1:ENST00000679052.1:ENST00000467117.6:ENST00000677134.1:ENST00000378795.9:ENST00000470123.2:ENST00000466896.5:ENST00000678251.1:ENST00000491033.1:ENST00000490618.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	55	2	2.46345	2.734565	3.00568	0.00827342	0.00811866	0.0813266	0.0766625
chr22	18574474	18574574	7551097	0	-	0.49	(0.476,0.515]	chr22	771831	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	PI4KAP1	ENSG00000274602.5	ENST00000612500.4:ENST00000611748.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	7	118	2	2.48917	2.73454	2.97991	0.00110233	3.10641e-4	0.03038	0.0162055
chr2	61399821	61399921	1129841	0	-	0.39	(0.378,0.408]	chr2	121485	42	INTRON	INTRON	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000453133.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	123	2	2.25517	2.734515	3.21386	0.00430492	5.98458e-5	0.0577899	0.00636653
chr10	69192664	69192764	4445198	0	+	0.42	(0.408,0.44]	chr10	410109	10	EXON_MRNA	EXON_MRNA:INTRON	SUPV3L1	ENSG00000156502.14	ENST00000359655.9:ENST00000471069.5:ENST00000483572.5:ENST00000422378.1:ENST00000478227.5:ENST00000486661.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	110	2	2.14702	2.7344850000000003	3.32195	0.0030836	2.54513e-4	0.0510391	0.0147895
chr20	47269020	47269120	7348624	0	-	0.47	(0.44,0.476]	chr20	749288	62	INTRON	INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000467200.6:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000468376.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	53	2	2.54944	2.73447	2.9195	0.0102021	0.00591346	0.0850389	0.0694038
chr10	78038472	78038568	4475927	0	+	0.28125	(0.28,0.32]	chr10	411990	6	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	RPS24	ENSG00000138326.21	ENST00000613865.5:ENST00000435275.5:ENST00000645440.1:ENST00000440692.6:ENST00000360830.9:ENST00000372360.9:ENST00000464716.6:ENST00000645698.1:ENST00000476545.6:ENST00000465692.2:ENST00000482069.5:ENST00000645195.1:ENST00000480662.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	139	2	2.36631	2.734465	3.10262	0.00142417	0.00114045	0.0347039	0.0307966
chr6	140193573	140193673	2968391	0	+	0.3	(0.28,0.32]	chr6	279015	445	INTRON	INTRON	ENSG00000288714	ENSG00000288714.1	ENST00000683950.1	lncRNA	lncRNA	lncRNA	lncRNA	7	151	2	2.64977	2.734465	2.81916	0.00117007	6.70052e-4	0.0312141	0.0234992
chr9	136225985	136226081	4373725	0	-	0.604167	(0.57,1]	chr9	402664	7	INTRON	INTRON	QSOX2	ENSG00000165661.17	ENST00000358701.10	protein_coding	protein_coding	protein_coding	protein_coding	4	35	2	1.83769	2.734465	3.63124	0.0297587	2.87208e-4	0.12908	0.0150568
chr5	137939042	137939140	2729836	0	-	0.397959	(0.378,0.408]	chr5	256881	12	UTR3	UTR3:EXON_MRNA	FAM13B	ENSG00000031003.11	ENST00000689681.1:ENST00000033079.7	protein_coding	protein_coding	protein_coding	protein_coding	5	78	2	1.95026	2.73443	3.5186	0.0138007	8.45009e-4	0.095051	0.0263813
chr3	44474500	44474600	1676698	0	-	0.29	(0.28,0.32]	chr3	171144	158	INTRON	INTRON	ZNF445	ENSG00000185219.18	ENST00000396077.8:ENST00000474600.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	67	2	2.59504	2.7344299999999997	2.87382	0.014868	0.00582473	0.0989021	0.0687439
chr9	37189651	37189751	4118353	0	+	0.43	(0.408,0.44]	chr9	375389	27	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000461038.5:ENST00000488607.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	99	2	2.29426	2.7343450000000002	3.17443	0.00277178	5.19132e-4	0.04874	0.0209322
chr7	74238422	74238522	3555611	0	-	0.59	(0.57,1]	chr7	330993	1	SS5_PROX	SS5_PROX:INTRON	RFC2	ENSG00000049541.11	ENST00000352131.7:ENST00000055077.8:ENST00000621097.4:ENST00000485545.5:ENST00000497430.1:ENST00000494019.5:ENST00000470266.5:ENST00000480432.5:ENST00000479105.6:ENST00000491206.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	35	2	2.23972	2.73414	3.22856	0.00670296	0.00205928	0.0707084	0.0420839
chr12	53010327	53010425	5141452	0	+	0.357143	(0.35,0.378]	chr12	484970	13	INTRON	INTRON	EIF4B	ENSG00000063046.18	ENST00000551527.5:ENST00000549077.5:ENST00000549645.5:ENST00000262056.14:ENST00000420463.7:ENST00000551002.5:ENST00000416762.7:ENST00000550704.5:ENST00000549481.5:ENST00000552490.5:ENST00000550390.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	43	2	2.53856	2.7340400000000002	2.92952	0.0326077	0.00881187	0.133687	0.084878
chr14	24293769	24293867	5845318	0	-	0.367347	(0.35,0.378]	chr14	556190	11	EXON_MRNA	EXON_MRNA:INTRON	DHRS1	ENSG00000157379.14	ENST00000288111.12:ENST00000396813.5:ENST00000561137.5:ENST00000558340.1:ENST00000561273.5:ENST00000559483.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	43	2	2.53856	2.7340400000000002	2.92952	0.0326077	0.00881187	0.133687	0.084878
chr20	49145898	49145998	7351948	0	-	0.36	(0.35,0.378]	chr20	749652	96	INTRON	INTRON	STAU1	ENSG00000124214.21	ENST00000371856.7:ENST00000371828.7:ENST00000340954.11:ENST00000347458.9:ENST00000360426.8:ENST00000371792.5:ENST00000371802.5:ENST00000437404.2	protein_coding	protein_coding	protein_coding	protein_coding	2	43	2	2.53856	2.7340400000000002	2.92952	0.0326077	0.00881187	0.133687	0.084878
chr11	103062197	103062297	5026269	0	-	0.32	(0.28,0.32]	chr11	473916	117	UTR3	UTR3:EXON_MRNA	DCUN1D5	ENSG00000137692.12	ENST00000260247.10:ENST00000527260.5:ENST00000531571.5:ENST00000531543.1:ENST00000529281.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	152	2	2.54553	2.734025	2.92252	0.00110861	7.49378e-4	0.0305035	0.0251179
chr1	46300285	46300384	442887	0	-	0.484848	(0.476,0.515]	chr1	53650	5	EXON_LNCRNA	EXON_LNCRNA:INTRON	LRRC41	ENSG00000132128.18	ENST00000617190.5:ENST00000343304.10:ENST00000615587.4:ENST00000498402.2:ENST00000469150.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	54	2	2.45598	2.733975	3.01197	0.00945755	0.00633162	0.0817766	0.0722266
chr7	5047532	5047632	3271732	0	+	0.29	(0.28,0.32]	chr7	304055	1	SS3_PROX	SS3_PROX:INTRON	RBAK	ENSG00000146587.18	ENST00000353796.7:ENST00000396912.2	protein_coding	protein_coding	protein_coding	protein_coding	7	112	2	1.7825	2.73397	3.68544	0.0119176	9.30275e-4	0.0962115	0.0279637
chr1	91506368	91506466	161163	0	+	0.357143	(0.35,0.378]	chr1	17379	42	INTRON	INTRON	CDC7	ENSG00000097046.13	ENST00000234626.11:ENST00000428239.5:ENST00000426137.1:ENST00000497611.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	43	2	2.60341	2.7339599999999997	2.86451	0.0275785	0.0109111	0.123904	0.0923273
chr7	87035037	87035137	3565185	0	-	0.38	(0.378,0.408]	chr7	332199	692	INTRON	INTRON	ELAPOR2	ENSG00000164659.15	ENST00000450689.7:ENST00000444627.5:ENST00000423294.5	protein_coding	protein_coding	protein_coding	protein_coding	4	67	2	1.82258	2.7339350000000002	3.64529	0.0341279	4.71767e-4	0.135102	0.0196294
chr12	110739266	110739366	5411498	0	-	0.35	(0.32,0.35]	chr12	516744	39	INTRON	INTRON	PPP1CC	ENSG00000186298.12	ENST00000335007.10:ENST00000340766.9:ENST00000550991.5:ENST00000551676.5:ENST00000620030.1:ENST00000551690.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:processed_transcript	3	62	2	2.67068	2.7338750000000003	2.79707	0.0170923	0.00406276	0.104099	0.0578984
chr16	31182664	31182762	6340579	0	+	0.459184	(0.44,0.476]	chr16	608323	1	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	FUS	ENSG00000089280.19	ENST00000566605.5:ENST00000254108.12:ENST00000380244.7:ENST00000487045.6:ENST00000487509.6:ENST00000568685.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	45	742	2	2.43051	2.73385	3.03719	1.15422e-5	5.79071e-7	0.00250683	4.48558e-4
chr7	92566261	92566361	3570674	0	-	0.39	(0.378,0.408]	chr7	332713	2	SS3_PROX	SS3_PROX:INTRON	FAM133B	ENSG00000234545.8	ENST00000445716.6:ENST00000438306.5:ENST00000415397.6:ENST00000481407.5:ENST00000427372.5:ENST00000494079.1:ENST00000468931.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	69	2	1.53052	2.73382	3.93712	0.0744544	1.09377e-4	0.192012	0.00884858
chr3	185937572	185937648	1886600	0	-	0.631579	(0.57,1]	chr3	188645	3	SS5_PROX	SS5_PROX:INTRON	TRA2B	ENSG00000136527.19	ENST00000453386.7:ENST00000456380.5:ENST00000382191.4:ENST00000465245.1:ENST00000485530.5:ENST00000480461.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	76	2	2.01786	2.733775	3.44969	0.00313784	5.72554e-6	0.0514466	0.00177762
chr12	56130081	56130164	5145827	0	+	0.542169	(0.515,0.57]	chr12	486225	1	SS3_PROX	SS3_PROX:INTRON	ESYT1	ENSG00000139641.13	ENST00000551790.5:ENST00000394048.10:ENST00000267113.4	protein_coding	protein_coding	protein_coding	protein_coding	2	35	2	2.34087	2.7337499999999997	3.12663	0.0469761	0.00374498	0.151917	0.0562234
chr12	132094811	132094910	5250292	0	+	0.555556	(0.515,0.57]	chr12	499298	29	INTRON	INTRON	EP400P1	ENSG00000185684.16	ENST00000407361.8:ENST00000446190.5:ENST00000690966.1:ENST00000689047.1:ENST00000454179.7:ENST00000689533.1:ENST00000688036.1:ENST00000688136.1:ENST00000488030.5:ENST00000389560.6:ENST00000689403.1:ENST00000443539.6:ENST00000392352.5:ENST00000539205.5:ENST00000332441.7	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	2	35	2	2.34087	2.7337499999999997	3.12663	0.0469761	0.00374498	0.151917	0.0562234
chr5	10356466	10356566	2317674	0	+	0.56	(0.515,0.57]	chr5	224612	14	INTRON	INTRON	MARCHF6	ENSG00000145495.16	ENST00000274140.10:ENST00000449913.6:ENST00000502795.5:ENST00000511802.5:ENST00000503788.5:ENST00000640713.1:ENST00000510872.5:ENST00000507863.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	35	2	2.34087	2.7337499999999997	3.12663	0.0469761	0.00374498	0.151917	0.0562234
chr1	8800171	8800271	373610	0	-	0.48	(0.476,0.515]	chr1	43555	72	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000656437.1:ENST00000659924.1	protein_coding	protein_coding	protein_coding	protein_coding	7	108	2	2.24352	2.733725	3.22393	0.0019689	3.84737e-4	0.0411469	0.0182343
chr12	120156219	120156289	5432840	0	-	0.328571	(0.32,0.35]	chr12	519208	1	SS5_PROX	SS5_PROX:INTRON	GCN1	ENSG00000089154.11	ENST00000300648.7:ENST00000551920.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	74	2	2.22655	2.7337100000000003	3.24087	0.00823133	0.00420518	0.0812969	0.0572185
chr3	37045674	37045772	1395689	0	+	0.346939	(0.32,0.35]	chr3	146271	30	INTRON	INTRON	MLH1	ENSG00000076242.16	ENST00000536378.5:ENST00000673899.1:ENST00000674111.1:ENST00000673972.1:ENST00000231790.8:ENST00000673715.1:ENST00000432299.6:ENST00000673897.1:ENST00000673947.1:ENST00000456676.6:ENST00000673673.1:ENST00000674019.1:ENST00000458205.6:ENST00000413212.2:ENST00000447829.6:ENST00000673990.1:ENST00000455445.6:ENST00000435176.5:ENST00000539477.6:ENST00000441265.6:ENST00000673889.1:ENST00000616768.5:ENST00000450420.5:ENST00000413740.1:ENST00000674125.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	74	2	2.22655	2.7337100000000003	3.24087	0.00823133	0.00420518	0.0812969	0.0572185
chr15	41349489	41349573	6004940	0	+	0.345238	(0.32,0.35]	chr15	571308	2	SS5_PROX	SS5_PROX:INTRON	NUSAP1	ENSG00000137804.14	ENST00000668273.1:ENST00000260359.10:ENST00000558123.5:ENST00000559046.5:ENST00000414849.6:ENST00000450592.6:ENST00000559596.6:ENST00000558582.5:ENST00000560747.5:ENST00000560177.5:ENST00000557840.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	64	2	2.57263	2.73369	2.89475	0.0312297	0.00160352	0.13151	0.0367961
chr19	34453481	34453573	7053380	0	+	0.358696	(0.35,0.378]	chr19	703543	10	INTRON	INTRON	UBA2	ENSG00000126261.13	ENST00000586313.1:ENST00000246548.9:ENST00000439527.6:ENST00000591016.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	59	2	2.66547	2.73363	2.80179	0.0233639	0.00223906	0.118323	0.0435144
chr9	128500632	128500726	4205376	0	+	0.393617	(0.378,0.408]	chr9	384550	5	UTR3	UTR3:EXON_MRNA	ODF2	ENSG00000136811.17	ENST00000351030.8:ENST00000444119.7:ENST00000393527.8:ENST00000686232.1:ENST00000434106.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	189	2	2.38354	2.73362	3.0837	9.1328e-4	1.61533e-5	0.0278396	0.00303754
chr3	150459534	150459634	1533947	0	+	0.21	[0,0.28]	chr3	159830	10	UTR3	UTR3:EXON_MRNA	TSC22D2	ENSG00000196428.13	ENST00000361875.8:ENST00000688009.1:ENST00000466814.1	protein_coding	protein_coding	protein_coding	protein_coding	6	144	2	2.62836	2.733605	2.83885	0.00399044	9.46625e-4	0.0550443	0.0282007
chr17	66554879	66554979	6664822	0	+	0.5	(0.476,0.515]	chr17	650337	3	SS5_PROX	SS5_PROX:INTRON	PRKCA	ENSG00000154229.12	ENST00000413366.8:ENST00000578063.5:ENST00000284384.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	54	2	2.13304	2.7336	3.33416	0.024866	0.00230489	0.132101	0.0428247
chr7	66923144	66923243	3326252	0	+	0.494949	(0.476,0.515]	chr7	309335	5	INTRON	INTRON	TMEM248	ENSG00000106609.16	ENST00000341567.8:ENST00000607045.5:ENST00000433271.6:ENST00000413593.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	54	2	2.13304	2.7336	3.33416	0.024866	0.00230489	0.132101	0.0428247
chrX	54568787	54568887	7665001	0	+	0.51	(0.476,0.515]	chrX	784798	16	INTRON	INTRON	GNL3L	ENSG00000130119.17	ENST00000674498.1	protein_coding	protein_coding	protein_coding	protein_coding	3	54	2	2.13304	2.7336	3.33416	0.024866	0.00230489	0.132101	0.0428247
chr19	16081633	16081726	7026024	0	+	0.526882	(0.515,0.57]	chr19	699188	7	EXON_MRNA	EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TPM4	ENSG00000167460.17	ENST00000646974.2:ENST00000586499.6:ENST00000647464.2:ENST00000668959.1:ENST00000590180.3:ENST00000655004.1:ENST00000642789.1:ENST00000653979.1:ENST00000645471.1:ENST00000659595.1:ENST00000647037.1:ENST00000587201.6:ENST00000643579.2:ENST00000586193.6:ENST00000643494.1:ENST00000670382.1:ENST00000300933.9:ENST00000646575.1:ENST00000586833.7:ENST00000642221.1:ENST00000658224.1:ENST00000344824.11:ENST00000588410.2:ENST00000657915.1:ENST00000588483.2:ENST00000592138.6:ENST00000664983.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	63	2	2.16051	2.73358	3.30665	0.0046825	0.00213226	0.0631419	0.041756
chr12	98517316	98517415	5198636	0	+	0.373737	(0.35,0.378]	chr12	491795	4	INTRON	INTRON	TMPO	ENSG00000120802.14	ENST00000548911.1:ENST00000556029.6:ENST00000343315.9:ENST00000266732.8:ENST00000393053.6:ENST00000546828.6:ENST00000261210.9:ENST00000549938.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	84	2	2.34278	2.733565	3.12435	0.0129593	7.66038e-4	0.0991015	0.025385
chr3	15848483	15848583	1624332	0	-	0.51	(0.476,0.515]	chr3	168034	338	INTRON	INTRON	ANKRD28	ENSG00000206560.12	ENST00000399451.6:ENST00000412318.5:ENST00000439830.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	85	2	2.62645	2.733565	2.84068	0.00217133	0.00135678	0.0417893	0.0339121
chr16	71904275	71904374	6386694	0	+	0.474747	(0.44,0.476]	chr16	614084	2	INTRON	INTRON	IST1	ENSG00000182149.21	ENST00000568581.5:ENST00000540296.5:ENST00000544564.5:ENST00000541571.6:ENST00000538104.5:ENST00000535424.5:ENST00000606369.5:ENST00000537613.5:ENST00000424485.6:ENST00000566536.5:ENST00000378799.11:ENST00000538565.5:ENST00000329908.12:ENST00000538850.5:ENST00000541918.5:ENST00000378798.9:ENST00000534994.5:ENST00000539186.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	40	2	2.66433	2.73354	2.80275	0.0194358	0.0146513	0.119831	0.0982604
chr2	95967838	95967938	1179497	0	-	0.45	(0.44,0.476]	chr2	126083	49	INTRON	INTRON	ANKRD36C	ENSG00000174501.15	ENST00000295246.7:ENST00000456556.5:ENST00000528268.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	40	2	2.66433	2.73354	2.80275	0.0194358	0.0146513	0.119831	0.0982604
chr16	72017705	72017805	6387089	0	+	0.38	(0.378,0.408]	chr16	614184	2	INTRON	INTRON	DHODH	ENSG00000102967.12	ENST00000572887.5:ENST00000219240.9:ENST00000574309.5:ENST00000573922.5:ENST00000572003.5:ENST00000573843.1:ENST00000571392.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	44	2	2.36428	2.73351	3.10274	0.0441088	0.00586642	0.162255	0.0668095
chr11	86057368	86057468	5014726	0	-	0.53	(0.515,0.57]	chr11	473022	254	INTRON	INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000630913.2:ENST00000528398.5:ENST00000356360.9:ENST00000534412.5:ENST00000531558.1:ENST00000531930.5:ENST00000532041.5:ENST00000525162.5:ENST00000528256.1:ENST00000528411.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	46	2	2.21273	2.733425	3.25412	0.0196151	0.00224554	0.109486	0.0435144
chr12	122593284	122593349	5241294	0	+	0.569231	(0.515,0.57]	chr12	497802	1	SS5_PROX	SS5_PROX:INTRON	KNTC1	ENSG00000184445.12	ENST00000450485.6:ENST00000333479.12:ENST00000535186.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	116	2	2.63844	2.73326	2.82808	4.34654e-4	1.90363e-4	0.0187509	0.0126178
chr4	159254585	159254685	2075024	0	+	0.41	(0.408,0.44]	chr4	205218	104	INTRON	INTRON	RAPGEF2	ENSG00000109756.10	ENST00000644474.1:ENST00000691494.1:ENST00000505478.5:ENST00000504604.5:ENST00000644902.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	104	2	2.42404	2.73321	3.04238	0.00413548	1.54233e-4	0.0566868	0.0106835
chr6	143176175	143176275	2976341	0	+	0.52	(0.515,0.57]	chr6	279149	106	INTRON	INTRON	AIG1	ENSG00000146416.19	ENST00000367601.8:ENST00000447498.5:ENST00000646199.1:ENST00000357847.9:ENST00000629020.2:ENST00000275235.8:ENST00000494282.6:ENST00000458219.1:ENST00000470265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	84	2	2.22907	2.73321	3.23735	0.00383939	2.1866e-4	0.0542786	0.0129728
chr2	28918295	28918395	725420	0	+	0.33	(0.32,0.35]	chr2	83817	3	SS5_PROX	SS5_PROX:INTRON	WDR43	ENSG00000163811.12	ENST00000407426.8:ENST00000296126.6	protein_coding	protein_coding	protein_coding	protein_coding	4	74	2	2.18777	2.733175	3.27858	0.00951422	0.00368368	0.0863913	0.0535094
chr20	4002461	4002561	7309277	0	-	0.35	(0.32,0.35]	chr20	744300	277	INTRON	INTRON	RNF24	ENSG00000101236.17	ENST00000336095.10:ENST00000358395.11:ENST00000545616.2	protein_coding	protein_coding	protein_coding	protein_coding	4	74	2	2.18777	2.733175	3.27858	0.00951422	0.00368368	0.0863913	0.0535094
chr3	138726880	138726979	1830412	0	-	0.444444	(0.44,0.476]	chr3	184011	118	INTRON	INTRON	PIK3CB	ENSG00000051382.9	ENST00000674063.1:ENST00000289153.6:ENST00000477593.5:ENST00000462898.5:ENST00000462294.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	64	2	2.38763	2.7331250000000002	3.07862	0.0060153	0.00394089	0.0674604	0.0573041
chrX	41090005	41090105	7644107	0	+	0.47	(0.44,0.476]	chrX	782230	35	INTRON	INTRON	USP9X	ENSG00000124486.14	ENST00000324545.9:ENST00000378308.7	protein_coding	protein_coding	protein_coding	protein_coding	4	64	2	2.38763	2.7331250000000002	3.07862	0.0060153	0.00394089	0.0674604	0.0573041
chr11	33730323	33730423	4941276	0	-	0.54	(0.515,0.57]	chr11	462933	69	INTRON	INTRON	CD59	ENSG00000085063.17	ENST00000642928.2:ENST00000651785.1:ENST00000395850.9:ENST00000652086.1:ENST00000426650.7:ENST00000533403.6:ENST00000351554.8:ENST00000527577.5:ENST00000643183.1:ENST00000528700.2	protein_coding	protein_coding	protein_coding	protein_coding	2	35	2	2.56306	2.733085	2.90311	0.0247751	0.0094233	0.131869	0.0817766
chr11	75270243	75270341	4989321	0	-	0.561224	(0.515,0.57]	chr11	471410	9	INTRON	INTRON	ARRB1	ENSG00000137486.17	ENST00000420843.7:ENST00000360025.7:ENST00000532447.5	protein_coding	protein_coding	protein_coding	protein_coding	2	35	2	2.56306	2.733085	2.90311	0.0247751	0.0094233	0.131869	0.0817766
chr14	69139652	69139752	5915978	0	-	0.52	(0.515,0.57]	chr14	562032	169	INTRON	INTRON	DCAF5	ENSG00000139990.18	ENST00000341516.10:ENST00000554215.5:ENST00000556847.5:ENST00000557386.5:ENST00000556111.1:ENST00000389997.10:ENST00000554681.1:ENST00000553943.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	35	2	2.56306	2.733085	2.90311	0.0247751	0.0094233	0.131869	0.0817766
chr5	54345701	54345801	2354079	0	+	0.4	(0.378,0.408]	chr5	227061	50	INTRON	INTRON	LINC01033	ENSG00000249069.8	ENST00000665899.1:ENST00000653566.1:ENST00000655801.1:ENST00000654906.1:ENST00000667636.1:ENST00000665869.1:ENST00000664079.1:ENST00000659703.1:ENST00000662351.1:ENST00000523194.7:ENST00000665795.1:ENST00000667992.1:ENST00000662022.1:ENST00000657771.1:ENST00000517934.1	lncRNA	lncRNA	lncRNA	lncRNA	8	124	2	2.02416	2.733065	3.44197	0.00361901	1.52249e-4	0.0554656	0.0112857
chr10	21548528	21548628	4404552	0	+	0.48	(0.476,0.515]	chr10	406427	68	INTRON	INTRON	MLLT10	ENSG00000078403.17	ENST00000651097.1:ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000377100.8:ENST00000377091.7:ENST00000650772.1:ENST00000651298.1:ENST00000652497.1:ENST00000495130.5:ENST00000377059.7:ENST00000621220.4:ENST00000476557.5:ENST00000462999.5:ENST00000430455.2:ENST00000479634.1:ENST00000480415.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	117	2	2.69854	2.7330550000000002	2.76757	0.00121528	2.52719e-4	0.031919	0.0141489
chr4	110192151	110192250	2227670	0	-	0.343434	(0.32,0.35]	chr4	218024	862	INTRON	INTRON	ELOVL6	ENSG00000170522.10	ENST00000394607.7:ENST00000302274.8:ENST00000514184.5:ENST00000506625.5:ENST00000506461.1:ENST00000503885.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	158	2	2.56085	2.73305	2.90525	0.00140121	1.48831e-4	0.0340865	0.0105921
chr1	32026713	32026813	62771	0	+	0.37	(0.35,0.378]	chr1	7939	120	INTRON	INTRON	KHDRBS1	ENSG00000121774.18	ENST00000327300.12:ENST00000307714.12:ENST00000492989.1:ENST00000484270.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	59	2	2.17079	2.733045	3.2953	0.0225978	0.0031465	0.124921	0.0500431
chr7	880791	880889	3269151	0	+	0.489796	(0.476,0.515]	chr7	303674	21	INTRON	INTRON	SUN1:GET4	ENSG00000164828.18:ENSG00000239857.7	ENST00000457861.1:ENST00000265857.8:ENST00000412734.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	119	2	2.50488	2.733005	2.96113	0.00285353	8.2239e-5	0.0474836	0.00761395
chr1	39565578	39565678	427671	0	-	0.5	(0.476,0.515]	chr1	51908	2	SS3_PROX	SS3_PROX:INTRON	PABPC4	ENSG00000090621.15	ENST00000677006.1:ENST00000527718.2:ENST00000676859.1:ENST00000372858.8:ENST00000372856.7:ENST00000372857.7:ENST00000372862.7:ENST00000676523.1:ENST00000677548.1:ENST00000678980.1:ENST00000677244.1:ENST00000677609.1:ENST00000679246.1:ENST00000678287.1:ENST00000678625.1:ENST00000470443.6:ENST00000677860.1:ENST00000676863.1:ENST00000678894.1:ENST00000421687.6:ENST00000525669.5:ENST00000513632.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	99	2	2.38989	2.7329499999999998	3.07601	0.00220823	5.95211e-4	0.0418375	0.0221865
chr19	799534	799625	6992115	0	+	0.604396	(0.57,1]	chr19	692236	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	PTBP1	ENSG00000011304.22	ENST00000635647.1:ENST00000627714.2:ENST00000676227.1:ENST00000677277.1:ENST00000592804.2:ENST00000349038.8:ENST00000590887.5:ENST00000586481.5:ENST00000586944.5:ENST00000356948.11:ENST00000394601.8:ENST00000677717.1:ENST00000589575.5:ENST00000587191.3:ENST00000679114.1:ENST00000350092.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	57	2	2.30813	2.73294	3.15775	0.00113374	2.72513e-4	0.0308663	0.0151392
chr5	154440391	154440490	2756017	0	-	0.424242	(0.408,0.44]	chr5	259913	37	INTRON	INTRON	SAP30L-AS1	ENSG00000245275.8	ENST00000658072.1:ENST00000519727.5:ENST00000652933.1:ENST00000524264.6:ENST00000652895.1:ENST00000501280.4	lncRNA	lncRNA	lncRNA	lncRNA	5	86	2	2.64127	2.73294	2.82461	0.00241819	0.00125199	0.0442901	0.0328543
chr12	120182676	120182774	5433135	0	-	0.571429	(0.57,1]	chr12	519319	34	INTRON	INTRON	GCN1	ENSG00000089154.11	ENST00000300648.7	protein_coding	protein_coding	protein_coding	protein_coding	3	29	2	2.23711	2.7328349999999997	3.22856	0.0172108	0.00205928	0.104099	0.0420839
chr2	28921633	28921731	725454	0	+	0.397959	(0.378,0.408]	chr2	83818	33	INTRON	INTRON	WDR43	ENSG00000163811.12	ENST00000407426.8:ENST00000296126.6	protein_coding	protein_coding	protein_coding	protein_coding	8	136	2	2.63723	2.7327700000000004	2.82831	7.49551e-4	2.5238e-4	0.0251179	0.0141412
chr3	49963867	49963965	1423193	0	+	0.387755	(0.378,0.408]	chr3	149963	8	INTRON	INTRON	RBM6	ENSG00000004534.15	ENST00000442092.5:ENST00000443081.5:ENST00000419610.5:ENST00000441115.5:ENST00000422955.5:ENST00000454079.5:ENST00000266022.9:ENST00000425608.5:ENST00000434592.5:ENST00000433811.1:ENST00000491874.5:ENST00000488807.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	114	2	2.51112	2.732755	2.95439	0.00148165	5.0824e-4	0.0349546	0.0202333
chr10	5802500	5802600	4544810	0	-	0.58	(0.57,1]	chr10	419801	14	INTRON	INTRON	GDI2	ENSG00000057608.17	ENST00000380191.9:ENST00000380181.7:ENST00000456041.5:ENST00000418688.5:ENST00000608581.5:ENST00000380127.5:ENST00000609712.1	protein_coding	protein_coding	protein_coding	protein_coding	3	29	2	2.33295	2.732745	3.13254	0.0122896	0.00310655	0.091087	0.0512344
chr3	9995927	9996027	1362061	0	+	0.39	(0.378,0.408]	chr3	143402	17	INTRON	INTRON	EMC3-AS1	ENSG00000180385.9	ENST00000692142.1:ENST00000366264.6:ENST00000693066.1:ENST00000326237.3:ENST00000440568.1:ENST00000424904.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	5	89	2	2.57022	2.7327	2.89518	0.00190046	0.00179058	0.0393643	0.0392749
chr7	139415731	139415829	3438161	0	+	0.479592	(0.476,0.515]	chr7	320377	28	INTRON	INTRON	LUC7L2:FMC1-LUC7L2	ENSG00000146963.18:ENSG00000269955.2	ENST00000541170.7:ENST00000541515.3:ENST00000619796.4:ENST00000354926.9:ENST00000456182.5:ENST00000263545.7:ENST00000498518.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	82	2	1.57103	2.73268	3.89433	0.0307896	1.98377e-4	0.143385	0.0129156
chr12	49749417	49749517	5135008	0	+	0.42	(0.408,0.44]	chr12	484124	4	SS3_PROX	SS3_PROX:INTRON	TMBIM6	ENSG00000139644.13	ENST00000548809.5:ENST00000551154.5:ENST00000546796.5:ENST00000549966.5:ENST00000547832.5:ENST00000547187.5:ENST00000267115.10:ENST00000552699.5:ENST00000552635.5:ENST00000546914.5:ENST00000548894.5:ENST00000549445.5:ENST00000550951.5:ENST00000549385.5:ENST00000548201.5:ENST00000548713.5:ENST00000423828.5:ENST00000550445.5:ENST00000549130.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	86	2	2.67392	2.73258	2.79124	0.00276922	0.00106946	0.0469265	0.0300133
chr7	121174634	121174734	3395515	0	+	0.33	(0.32,0.35]	chr7	317781	246	INTRON	INTRON	CPED1	ENSG00000106034.18	ENST00000310396.10:ENST00000450913.6:ENST00000423795.5:ENST00000466055.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	103	2	2.3011	2.73255	3.164	0.00617969	7.36249e-4	0.0713552	0.02495
chrX	48464448	48464545	7815402	0	-	0.43299	(0.408,0.44]	chrX	796682	11	INTRON	INTRON	SLC38A5	ENSG00000017483.16	ENST00000595796.5:ENST00000619100.4:ENST00000620913.5:ENST00000497336.1:ENST00000494034.5:ENST00000440085.5:ENST00000441948.5:ENST00000413668.5:ENST00000416711.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	86	2	2.60785	2.73254	2.85723	0.00211413	0.00146754	0.0415897	0.035104
chr5	54379952	54380052	2354422	0	+	0.41	(0.408,0.44]	chr5	227061	393	INTRON	INTRON	LINC01033	ENSG00000249069.8	ENST00000665899.1:ENST00000653566.1:ENST00000655801.1:ENST00000654906.1:ENST00000667636.1:ENST00000665869.1:ENST00000664079.1:ENST00000659703.1:ENST00000662351.1:ENST00000523194.7:ENST00000665795.1:ENST00000667992.1:ENST00000662022.1:ENST00000657771.1:ENST00000517934.1	lncRNA	lncRNA	lncRNA	lncRNA	2	40	2	2.43988	2.7325049999999997	3.02513	0.0398236	0.0059965	0.143072	0.0700606
chr6	111004160	111004259	2939526	0	+	0.414141	(0.408,0.44]	chr6	276871	40	INTRON	INTRON	RPF2	ENSG00000197498.13	ENST00000368864.8:ENST00000441448.7:ENST00000607388.1:ENST00000425871.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	40	2	2.43988	2.7325049999999997	3.02513	0.0398236	0.0059965	0.143072	0.0700606
chr9	133270963	133271063	4369989	0	-	0.26	[0,0.28]	chr9	402068	84	INTRON	INTRON	ABO	ENSG00000175164.16	ENST00000679909.1:ENST00000453660.4:ENST00000647353.1:ENST00000611156.4:ENST00000538324.2:ENST00000651471.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	152	2	2.70223	2.732435	2.76264	0.00247858	0.00115414	0.0446195	0.0313436
chr9	130109098	130109194	4211521	0	+	0.489583	(0.476,0.515]	chr9	386069	12	INTRON	INTRON	GPR107	ENSG00000148358.20	ENST00000372406.5:ENST00000372410.7:ENST00000347136.11:ENST00000493417.5:ENST00000610997.1:ENST00000483935.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	64	2	2.41328	2.7324	3.05152	0.0064848	0.00355364	0.0699952	0.0547657
chr22	19415756	19415856	7554265	0	-	0.39	(0.378,0.408]	chr22	772317	46	INTRON	INTRON	HIRA:C22orf39	ENSG00000100084.14:ENSG00000242259.9	ENST00000263208.5:ENST00000340170.8:ENST00000509549.5:ENST00000464189.5:ENST00000452818.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	56	2	2.35103	2.732315	3.1136	0.014158	0.00443339	0.0959618	0.061054
chr7	116863847	116863946	3385375	0	+	0.40404	(0.378,0.408]	chr7	317031	8	INTRON	INTRON	CAPZA2	ENSG00000198898.15	ENST00000464223.5:ENST00000484325.1:ENST00000414148.6:ENST00000361183.8:ENST00000449080.5:ENST00000639546.1:ENST00000426421.5:ENST00000490693.5:ENST00000417431.5:ENST00000461878.5:ENST00000466023.1:ENST00000464669.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	66	2	2.2708	2.73224	3.19368	0.00646593	0.00426861	0.073179	0.0573912
chr5	131779633	131779733	2720571	0	-	0.39	(0.378,0.408]	chr5	255730	346	INTRON	INTRON	FNIP1	ENSG00000217128.13	ENST00000510461.6:ENST00000307954.12:ENST00000307968.11:ENST00000511848.1	protein_coding	protein_coding	protein_coding	protein_coding	4	66	2	2.18512	2.73217	3.27922	0.00902136	0.00312717	0.0851259	0.0499153
chr1	77682084	77682184	493459	0	-	0.42	(0.408,0.44]	chr1	58320	1	SS5_PROX	SS5_PROX:INTRON	ZZZ3	ENSG00000036549.13	ENST00000370801.8:ENST00000370798.5:ENST00000433749.5:ENST00000414381.5:ENST00000463166.5:ENST00000469944.1:ENST00000458763.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	40	2	2.71911	2.732145	2.74518	0.0189489	0.0152229	0.108861	0.108535
chr2	55568663	55568763	1124621	0	-	0.41	(0.408,0.44]	chr2	120616	3	SS3_PROX	SS3_PROX:INTRON	PPP4R3B	ENSG00000275052.5	ENST00000616407.2:ENST00000611717.4:ENST00000616288.4:ENST00000482826.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	40	2	2.71911	2.732145	2.74518	0.0189489	0.0152229	0.108861	0.108535
chr3	194620858	194620957	1891665	0	-	0.535354	(0.515,0.57]	chr3	189319	27	INTRON	INTRON	TMEM44	ENSG00000145014.18	ENST00000392432.6:ENST00000347147.9:ENST00000381975.7:ENST00000473092.5:ENST00000452358.5:ENST00000419280.5:ENST00000494894.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	46	2	2.27238	2.73208	3.19178	0.0161808	0.00289534	0.101453	0.0494641
chr1	1644925	1645025	360457	0	-	0.56	(0.515,0.57]	chr1	41912	4	SS5_PROX	SS5_PROX:INTRON	CDK11B	ENSG00000248333.9	ENST00000341832.11:ENST00000407249.7:ENST00000340677.9:ENST00000611150.3:ENST00000615951.4:ENST00000626918.2:ENST00000629289.2:ENST00000629312.2:ENST00000341028.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	56	2	2.496	2.73207	2.96814	0.00756432	0.00225531	0.0749063	0.0436331
chr15	77997067	77997166	6237767	0	-	0.646465	(0.57,1]	chr15	595325	22	UTR3	UTR3:EXON_MRNA:INTRON	TBC1D2B	ENSG00000167202.12	ENST00000465531.1:ENST00000300584.8:ENST00000409931.7:ENST00000418039.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	29	2	2.28103	2.7320149999999996	3.183	0.0151554	0.00254356	0.108535	0.0448135
chr16	85633114	85633213	6416168	0	+	0.59596	(0.57,1]	chr16	615481	194	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1:ENST00000405402.6:ENST00000411612.5:ENST00000253458.12:ENST00000393243.5	protein_coding	protein_coding	protein_coding	protein_coding	3	29	2	2.28103	2.7320149999999996	3.183	0.0151554	0.00254356	0.108535	0.0448135
chr1	171593217	171593315	254335	0	+	0.204082	[0,0.28]	chr1	30290	15	UTR3	UTR3:EXON_MRNA	PRRC2C	ENSG00000117523.18	ENST00000647382.2:ENST00000367742.7:ENST00000338920.8:ENST00000426496.6:ENST00000495585.1:ENST00000644916.1	protein_coding	protein_coding	protein_coding	protein_coding	4	93	2	1.91746	2.731835	3.54621	0.0323084	0.00124865	0.132921	0.0328543
chr22	19940225	19940322	7556313	0	-	0.340206	(0.32,0.35]	chr22	772574	22	INTRON	INTRON	TXNRD2	ENSG00000184470.21	ENST00000474308.5:ENST00000400525.6:ENST00000400521.7:ENST00000400519.6:ENST00000334363.14:ENST00000496729.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	47	2	2.56618	2.731805	2.89743	0.0274185	0.0127608	0.136498	0.0926667
chr13	113190371	113190453	5651867	0	-	0.378049	(0.378,0.408]	chr13	538589	1	SS5_PROX	SS5_PROX:INTRON	PCID2	ENSG00000126226.22	ENST00000337344.9:ENST00000622406.4:ENST00000375479.6:ENST00000375477.5:ENST00000246505.9:ENST00000375459.5:ENST00000375457.2:ENST00000475433.5:ENST00000480971.5:ENST00000484641.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	102	2	2.31917	2.7317600000000004	3.14435	0.00252588	6.4029e-4	0.0465056	0.0231685
chr20	35647227	35647327	7335601	0	-	0.54	(0.515,0.57]	chr20	747284	140	INTRON	INTRON	CPNE1	ENSG00000214078.13	ENST00000352393.8:ENST00000397443.7:ENST00000317677.9:ENST00000483359.5:ENST00000397442.5:ENST00000401607.6:ENST00000437340.5:ENST00000430570.5:ENST00000412056.5:ENST00000414664.5:ENST00000416778.5:ENST00000439806.6:ENST00000439669.5:ENST00000420363.5:ENST00000434795.5:ENST00000440240.5:ENST00000458038.5:ENST00000437100.5:ENST00000414711.5:ENST00000435747.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	101	2	2.48529	2.731725	2.97816	9.88223e-4	2.365e-4	0.0289028	0.0140941
chr6	34817856	34817956	2848652	0	+	0.6	(0.57,1]	chr6	269121	252	INTRON	INTRON	UHRF1BP1	ENSG00000065060.18	ENST00000192788.6	protein_coding	protein_coding	protein_coding	protein_coding	3	30	2	1.9042	2.7317	3.5592	0.0476976	4.21089e-4	0.153019	0.0183576
chr7	138527039	138527137	3435314	0	+	0.27551	[0,0.28]	chr7	319985	13	INTRON	INTRON	TRIM24	ENSG00000122779.18	ENST00000343526.9:ENST00000415680.6:ENST00000497516.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	76	2	2.52489	2.731695	2.9385	0.0142776	0.0084136	0.0963703	0.082518
chr6	89787065	89787161	3161703	0	-	0.395833	(0.378,0.408]	chr6	294850	16	INTRON	INTRON	MDN1	ENSG00000112159.12	ENST00000369393.8:ENST00000629399.2:ENST00000439638.1	protein_coding	protein_coding	protein_coding	protein_coding	4	74	2	2.5938	2.731675	2.86955	0.00614976	0.00159247	0.0676501	0.0367961
chr2	177259011	177259111	1275790	0	-	0.58	(0.57,1]	chr2	134708	244	INTRON	INTRON	NFE2L2	ENSG00000116044.16	ENST00000397063.8:ENST00000464747.5:ENST00000397062.8:ENST00000446151.6:ENST00000449627.1:ENST00000448782.5:ENST00000430047.1:ENST00000586532.5:ENST00000421929.5:ENST00000423513.5:ENST00000588123.1:ENST00000477534.1:ENST00000462023.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	22	2	2.66438	2.731635	2.79889	0.0171563	0.0110274	0.104099	0.0927187
chr3	177185482	177185582	1872329	0	-	0.6	(0.57,1]	chr3	187438	142	INTRON	INTRON	TBL1XR1	ENSG00000177565.18	ENST00000457928.7:ENST00000430069.5:ENST00000673974.1:ENST00000352800.10:ENST00000422442.6:ENST00000428970.5:ENST00000424913.5:ENST00000437738.5:ENST00000431421.5:ENST00000635794.1:ENST00000630796.2:ENST00000450267.5:ENST00000630833.2:ENST00000431674.5:ENST00000422066.5:ENST00000443315.5:ENST00000627825.2:ENST00000427349.5:ENST00000413084.5:ENST00000637137.1:ENST00000491623.2:ENST00000637544.1:ENST00000636187.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	22	2	2.66438	2.731635	2.79889	0.0171563	0.0110274	0.104099	0.0927187
chr16	24010861	24010961	6325511	0	+	0.49	(0.476,0.515]	chr16	605711	219	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000498739.1:ENST00000647422.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	131	2	2.72421	2.731625	2.73904	0.00107964	1.35726e-4	0.0302522	0.0100405
chr17	31937820	31937920	6595683	0	+	0.48	(0.476,0.515]	chr17	641539	3	SS5_PROX	SS5_PROX:INTRON	SUZ12	ENSG00000178691.11	ENST00000322652.10:ENST00000580398.1	protein_coding	protein_coding	protein_coding	protein_coding	9	103	2	1.82192	2.731595	3.64127	0.00497872	6.42302e-4	0.0646039	0.0231685
chr6	28352971	28353070	2840056	0	+	0.535354	(0.515,0.57]	chr6	266673	22	INTRON	INTRON	ZKSCAN3	ENSG00000189298.14	ENST00000252211.7:ENST00000377255.3:ENST00000341464.9	protein_coding	protein_coding	protein_coding	protein_coding	3	46	2	2.62817	2.7315899999999997	2.83501	0.0117686	0.004048	0.0894475	0.0578376
chr6	73302983	73303083	3139054	0	-	0.52	(0.515,0.57]	chr6	292508	106	INTRON	INTRON	KHDC1	ENSG00000135314.13	ENST00000370384.7:ENST00000484801.5:ENST00000474593.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	46	2	2.62817	2.7315899999999997	2.83501	0.0117686	0.004048	0.0894475	0.0578376
chr16	54920664	54920764	6488449	0	-	0.32	(0.28,0.32]	chr16	627574	43	EXON_LNCRNA	EXON_LNCRNA:SS3_PROX:INTRON	CRNDE	ENSG00000245694.11	ENST00000613942.2:ENST00000661493.1:ENST00000668556.1:ENST00000660344.1:ENST00000502066.7:ENST00000559598.7:ENST00000688921.1:ENST00000501177.9:ENST00000661312.1:ENST00000689582.1:ENST00000558031.7:ENST00000689375.1:ENST00000691307.1:ENST00000657142.1:ENST00000557792.2:ENST00000559432.6:ENST00000655114.1:ENST00000560912.6:ENST00000558952.2	lncRNA	lncRNA	lncRNA	lncRNA	7	152	2	2.52281	2.73154	2.94027	0.00385251	1.48354e-4	0.0542786	0.0105826
chr5	181253321	181253421	2563400	0	+	0.48	(0.476,0.515]	chr5	245312	50	INTRON	INTRON	CTC-338M12.4	ENSG00000233937.8	ENST00000506340.3:ENST00000505151.6:ENST00000511331.5:ENST00000417281.2	lncRNA	lncRNA	lncRNA	lncRNA	6	98	2	2.21313	2.7313650000000003	3.2496	0.00401502	3.39435e-4	0.0578059	0.0170719
chr15	44579128	44579227	6163885	0	-	0.414141	(0.408,0.44]	chr15	587255	37	INTRON	INTRON	SPG11	ENSG00000104133.16	ENST00000684235.1:ENST00000261866.12:ENST00000559511.6:ENST00000682065.1:ENST00000682669.1:ENST00000683496.1:ENST00000682460.1:ENST00000682495.1:ENST00000684038.1:ENST00000683186.1:ENST00000683734.1:ENST00000683753.1:ENST00000535302.6:ENST00000427534.6:ENST00000561391.2:ENST00000558319.5:ENST00000684676.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	54	2	2.31565	2.731355	3.14706	0.0154718	0.00382411	0.100909	0.0562562
chr10	70409236	70409336	4447126	0	+	0.38	(0.378,0.408]	chr10	410345	43	INTRON	INTRON	EIF4EBP2	ENSG00000148730.7	ENST00000373218.5	protein_coding	protein_coding	protein_coding	protein_coding	7	113	2	2.22007	2.73135	3.24263	0.0022373	4.05005e-4	0.0435144	0.0185763
chr11	73979384	73979435	4985905	0	-	0.431373	(0.408,0.44]	chr11	470952	2	INTRON	INTRON	UCP2	ENSG00000175567.11	ENST00000663595.2:ENST00000310473.9:ENST00000536983.5:ENST00000543714.5:ENST00000539764.1:ENST00000542615.5:ENST00000541027.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	64	2	2.30838	2.73126	3.15414	0.00547703	0.00469847	0.0671198	0.0600108
chr7	119839344	119839444	3629734	0	-	0.39	(0.378,0.408]	chr7	337335	381	INTRON	INTRON	LINC02476	ENSG00000225546.6	ENST00000660268.1:ENST00000431071.5:ENST00000426413.2	lncRNA	lncRNA	lncRNA	lncRNA	9	156	2	2.28418	2.731255	3.17833	0.00226196	2.21243e-5	0.0425438	0.0036704
chr10	73057578	73057678	4647448	0	-	0.28	[0,0.28]	chr10	427530	36	INTRON	INTRON	P4HA1	ENSG00000122884.13	ENST00000394890.7:ENST00000307116.6:ENST00000373008.6:ENST00000440381.5:ENST00000263556.3	protein_coding	protein_coding	protein_coding	protein_coding	3	78	2	2.64309	2.731195	2.8193	0.0308646	0.00285248	0.13151	0.0494641
chr4	128842253	128842352	2044595	0	+	0.363636	(0.35,0.378]	chr4	203004	101	INTRON	INTRON	JADE1	ENSG00000077684.16	ENST00000226319.11:ENST00000511647.5:ENST00000452328.6:ENST00000504089.5:ENST00000512960.5:ENST00000503785.5:ENST00000610919.4:ENST00000510308.5:ENST00000511925.5:ENST00000413543.6:ENST00000611140.4:ENST00000507833.5:ENST00000508997.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	44	2	2.24535	2.7310600000000003	3.21677	0.0647516	0.00313804	0.179192	0.0514466
chr3	11816779	11816879	1615779	0	-	0.41	(0.408,0.44]	chr3	166773	3	SS5_PROX	SS5_PROX:INTRON	TAMM41	ENSG00000144559.11	ENST00000273037.9:ENST00000455809.6:ENST00000457498.5:ENST00000414736.1:ENST00000444133.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	77	2	2.09818	2.73098	3.36378	0.00772939	0.0016048	0.0757122	0.0367961
chr1	70209863	70209962	142471	0	+	0.383838	(0.378,0.408]	chr1	15965	37	INTRON	INTRON	SRSF11	ENSG00000116754.14	ENST00000370951.5:ENST00000463877.1:ENST00000687381.1:ENST00000370950.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	41	2	2.53503	2.7308399999999997	2.92665	0.0319942	0.0086017	0.13174	0.083729
chr1	93294958	93295058	508893	0	-	0.39	(0.378,0.408]	chr1	59957	39	INTRON	INTRON	CCDC18-AS1	ENSG00000223745.8	ENST00000413606.5:ENST00000457025.5:ENST00000451302.6:ENST00000668257.1:ENST00000446528.6:ENST00000415150.5:ENST00000455474.5:ENST00000447577.5:ENST00000442860.5:ENST00000414430.5:ENST00000429859.5:ENST00000424517.3:ENST00000427669.5:ENST00000661111.1	lncRNA	lncRNA	lncRNA	lncRNA	2	41	2	2.53503	2.7308399999999997	2.92665	0.0319942	0.0086017	0.13174	0.083729
chr10	97249331	97249431	4674721	0	-	0.38	(0.378,0.408]	chr10	430777	26	INTRON	INTRON	ARHGAP19	ENSG00000213390.11	ENST00000492211.5:ENST00000358308.7:ENST00000358531.9:ENST00000487035.1:ENST00000371027.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	41	2	2.53503	2.7308399999999997	2.92665	0.0319942	0.0086017	0.13174	0.083729
chr2	131503763	131503860	867063	0	+	0.381443	(0.378,0.408]	chr2	97366	19	INTRON	INTRON	SMPD4BP	ENSG00000152117.18	ENST00000438378.2:ENST00000415574.6:ENST00000692700.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript:transcribed_processed_pseudogene	2	41	2	2.53503	2.7308399999999997	2.92665	0.0319942	0.0086017	0.13174	0.083729
chr7	130035358	130035457	3638156	0	-	0.393939	(0.378,0.408]	chr7	338279	60	INTRON	INTRON	ZC3HC1	ENSG00000091732.17	ENST00000311873.9:ENST00000358303.9:ENST00000360708.9:ENST00000467642.5:ENST00000648450.1:ENST00000481503.5:ENST00000477578.5:ENST00000471022.5:ENST00000483827.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	41	2	2.53503	2.7308399999999997	2.92665	0.0319942	0.0086017	0.13174	0.083729
chr7	151072926	151073022	3448295	0	+	0.395833	(0.378,0.408]	chr7	322123	4	INTRON	INTRON	SLC4A2	ENSG00000164889.15	ENST00000485713.5:ENST00000413384.7:ENST00000677246.1:ENST00000392826.6:ENST00000461735.1:ENST00000460010.1:ENST00000482697.1:ENST00000472204.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	41	2	2.53503	2.7308399999999997	2.92665	0.0319942	0.0086017	0.13174	0.083729
chr4	73169390	73169490	2159931	0	-	0.52	(0.515,0.57]	chr4	212787	3	SS3_PROX	SS3_PROX:INTRON	ANKRD17	ENSG00000132466.20	ENST00000358602.9:ENST00000558247.5:ENST00000330838.10:ENST00000509867.6:ENST00000561029.1:ENST00000559367.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	74	2	2.6325	2.73083	2.82916	0.00439001	4.25151e-4	0.0585064	0.018441
chr12	104302475	104302575	5210165	0	+	0.46	(0.44,0.476]	chr12	493210	110	INTRON	INTRON	TXNRD1	ENSG00000198431.17	ENST00000525566.6:ENST00000526266.5:ENST00000503506.6:ENST00000526691.5:ENST00000531691.5:ENST00000526390.5:ENST00000531689.5:ENST00000529546.5:ENST00000529751.1:ENST00000528079.6:ENST00000526580.5:ENST00000529784.5:ENST00000524698.5:ENST00000527688.5:ENST00000527335.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	119	2	2.50734	2.730805	2.95427	0.00288299	8.41842e-5	0.0475859	0.00775456
chr9	130756254	130756354	4214287	0	+	0.38	(0.378,0.408]	chr9	386427	414	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000393293.4	protein_coding	protein_coding	protein_coding	protein_coding	20	339	2	2.68056	2.73076	2.78096	4.90653e-5	9.88357e-6	0.00608708	0.00228612
chr15	94893120	94893220	6105560	0	+	0.39	(0.378,0.408]	chr15	581666	359	INTRON	INTRON	ENSG00000277654	ENSG00000277654.6	ENST00000618611.4:ENST00000648065.1:ENST00000618377.1:ENST00000621842.4:ENST00000615751.4:ENST00000614581.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	2	41	2	2.60296	2.73075	2.85854	0.0267851	0.0107837	0.123349	0.0920575
chr19	12534761	12534861	7139789	0	-	0.4	(0.378,0.408]	chr19	720329	19	INTRON	INTRON	ZNF564	ENSG00000249709.8	ENST00000339282.12:ENST00000427105.1:ENST00000596193.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	41	2	2.60296	2.73075	2.85854	0.0267851	0.0107837	0.123349	0.0920575
chr12	53458771	53458871	5142956	0	+	0.5	(0.476,0.515]	chr12	485395	1	SS3_PROX	SS3_PROX:INTRON	PCBP2	ENSG00000197111.16	ENST00000546463.6:ENST00000437231.5:ENST00000447282.5:ENST00000359282.9:ENST00000549863.5:ENST00000359462.9:ENST00000550520.6:ENST00000552296.6:ENST00000551104.5:ENST00000552819.5:ENST00000455667.7:ENST00000439930.7:ENST00000548933.5:ENST00000546652.6:ENST00000562264.5:ENST00000548190.1:ENST00000550585.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	89	2	1.37743	2.73067	4.08391	0.0477443	4.74551e-5	0.153019	0.00562068
chr12	123407703	123407800	5242820	0	+	0.494845	(0.476,0.515]	chr12	498222	1	UTR3	UTR3:EXON_MRNA	KMT5A	ENSG00000183955.14	ENST00000402868.8:ENST00000437519.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	97	2	2.46098	2.730665	3.00035	0.00126759	0.00109036	0.0330359	0.0303873
chr16	67778674	67778774	6505404	0	-	0.46	(0.44,0.476]	chr16	629654	62	INTRON	INTRON	RANBP10	ENSG00000141084.12	ENST00000317506.8:ENST00000448631.6:ENST00000602506.5:ENST00000602677.5:ENST00000602525.5:ENST00000602638.5:ENST00000602815.5:ENST00000602887.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	53	2	2.59888	2.730595	2.86231	0.012214	0.00487719	0.0910127	0.0640618
chr1	1317659	1317739	359491	0	-	0.575	(0.57,1]	chr1	41632	2	EXON_LNCRNA	EXON_LNCRNA:INTRON	INTS11:ENSG00000240731	ENSG00000127054.22:ENSG00000240731.1	ENST00000540437.5:ENST00000545578.5:ENST00000620829.4:ENST00000435064.6:ENST00000323275.10:ENST00000411962.5:ENST00000419704.5:ENST00000458452.7:ENST00000421495.6:ENST00000532772.5:ENST00000450926.6:ENST00000527098.5:ENST00000528879.5:ENST00000531377.5:ENST00000434694.6:ENST00000488042.6:ENST00000526797.5:ENST00000526332.5:ENST00000430786.5:ENST00000527719.5:ENST00000530031.5:ENST00000526113.1:ENST00000526904.5:ENST00000525603.1:ENST00000444968.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA	13	110	2	2.54534	2.7305599999999997	2.91578	1.37576e-4	4.08808e-6	0.0106923	0.00134281
chr16	66725148	66725248	6501958	0	-	0.49	(0.476,0.515]	chr16	628984	4	SS3_PROX	SS3_PROX:INTRON	DYNC1LI2	ENSG00000135720.13	ENST00000258198.7:ENST00000443351.6:ENST00000563628.6:ENST00000569320.5:ENST00000567499.5:ENST00000564559.6:ENST00000568453.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	71	2	2.45598	2.730525	3.00507	0.00945755	8.38796e-4	0.0817766	0.0263691
chr22	49611748	49611848	7602198	0	-	0.37	(0.35,0.378]	chr22	778570	161	INTRON	INTRON	MIR3667HG	ENSG00000188511.13	ENST00000414287.5:ENST00000416411.1:ENST00000689875.1	lncRNA	lncRNA	lncRNA	lncRNA	4	78	2	2.69904	2.73048	2.76192	0.00438476	0.00265021	0.0585064	0.0474328
chr3	185771088	185771188	1885809	0	-	0.47	(0.44,0.476]	chr3	188573	724	INTRON	INTRON	IGF2BP2	ENSG00000073792.16	ENST00000382199.7:ENST00000346192.7:ENST00000457616.6:ENST00000421047.3:ENST00000461957.5:ENST00000493302.5:ENST00000466476.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	71	2	2.55649	2.730445	2.9044	0.00670547	0.00132926	0.0707084	0.0335085
chr2	161345021	161345121	901478	0	+	0.37	(0.35,0.378]	chr2	99704	258	INTRON	INTRON	PSMD14	ENSG00000115233.12	ENST00000409682.8:ENST00000437630.1	protein_coding	protein_coding	protein_coding	protein_coding	3	58	2	2.67874	2.73043	2.78212	0.0168532	0.00373022	0.103549	0.0561984
chr2	161331249	161331348	901340	0	+	0.444444	(0.44,0.476]	chr2	99704	120	INTRON	INTRON	PSMD14	ENSG00000115233.12	ENST00000409682.8:ENST00000437630.1	protein_coding	protein_coding	protein_coding	protein_coding	6	99	2	2.33785	2.730415	3.12298	0.00284182	4.66209e-4	0.0473478	0.0195589
chr12	95504661	95504760	5193329	0	+	0.454545	(0.44,0.476]	chr12	491171	1	INTRON	INTRON	METAP2	ENSG00000111142.14	ENST00000535095.5:ENST00000546753.5:ENST00000261220.13:ENST00000323666.10:ENST00000550777.5:ENST00000551840.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	53	2	2.33272	2.7303550000000003	3.12799	0.0129984	0.0050635	0.0991656	0.0621733
chr18	12319935	12320035	6874886	0	+	0.47	(0.44,0.476]	chr18	681093	85	INTRON	INTRON	TUBB6	ENSG00000176014.13	ENST00000590693.5:ENST00000590103.5:ENST00000591909.5:ENST00000317702.10:ENST00000417736.2:ENST00000586810.5:ENST00000586653.5:ENST00000590388.5:ENST00000592683.5:ENST00000590967.5:ENST00000591208.1:ENST00000591463.1:ENST00000586691.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	53	2	2.33272	2.7303550000000003	3.12799	0.0129984	0.0050635	0.0991656	0.0621733
chr6	134973809	134973908	3224636	0	-	0.393939	(0.378,0.408]	chr6	299772	41	INTRON	INTRON	HBS1L	ENSG00000112339.15	ENST00000367837.10:ENST00000527578.5:ENST00000527005.5:ENST00000415177.6:ENST00000367826.6:ENST00000533274.5:ENST00000526100.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	136	2	2.67693	2.73033	2.78373	9.21936e-4	2.01028e-4	0.0278396	0.0124047
chr8	67209784	67209884	3962444	0	-	0.58	(0.57,1]	chr8	363563	27	INTRON	INTRON	ARFGEF1	ENSG00000066777.9	ENST00000520381.5:ENST00000518789.5:ENST00000262215.8:ENST00000518230.5	protein_coding	protein_coding	protein_coding	protein_coding	6	54	2	2.64903	2.730295	2.81156	9.85026e-4	3.95149e-4	0.0288488	0.0185763
chr11	3755402	3755502	4894741	0	-	0.47	(0.44,0.476]	chr11	458876	16	INTRON	INTRON	NUP98	ENSG00000110713.17	ENST00000359171.8:ENST00000324932.12:ENST00000650171.1:ENST00000355260.7:ENST00000397004.8:ENST00000397007.8:ENST00000527104.5:ENST00000529379.1:ENST00000397013.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	142	2	2.46551	2.73027	2.99503	3.60069e-4	2.98386e-4	0.0169207	0.0160416
chr17	50722842	50722940	6626999	0	+	0.367347	(0.35,0.378]	chr17	647179	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	LUC7L3:ENSG00000278963	ENSG00000108848.16:ENSG00000278963.1	ENST00000625349.2:ENST00000508045.5:ENST00000508218.5:ENST00000509335.5:ENST00000506686.5:ENST00000393227.6:ENST00000504563.6:ENST00000505658.6:ENST00000240304.5:ENST00000508482.5:ENST00000505619.5:ENST00000510984.5:ENST00000507200.5:ENST00000623774.1	protein_coding	protein_coding	protein_coding:TEC	protein_coding:retained_intron:nonsense_mediated_decay:TEC	2	44	2	2.57049	2.73026	2.89003	0.0262669	0.0122391	0.133676	0.0910127
chr16	21438648	21438747	6460701	0	-	0.393939	(0.378,0.408]	chr16	623222	72	INTRON	INTRON	NPIPB3	ENSG00000169246.16	ENST00000521589.5:ENST00000545358.5:ENST00000543368.1:ENST00000544154.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	84	2	1.78414	2.730115	3.67609	0.0144669	6.32264e-4	0.105142	0.0231174
chr16	8809613	8809711	6284777	0	+	0.520408	(0.515,0.57]	chr16	601833	22	EXON_MRNA	EXON_MRNA:INTRON	PMM2	ENSG00000140650.13	ENST00000566983.5:ENST00000682008.1:ENST00000683435.1:ENST00000683094.1:ENST00000566604.5:ENST00000570134.5:ENST00000268261.9:ENST00000683274.1:ENST00000682393.1:ENST00000566540.5:ENST00000562318.5:ENST00000565896.5:ENST00000568602.5:ENST00000570076.5:ENST00000569958.5:ENST00000565221.5:ENST00000564069.1:ENST00000567697.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	101	2	2.15	2.7301	3.3102	0.00172219	1.88344e-4	0.0383099	0.012549
chr7	75519115	75519215	3559061	0	-	0.37	(0.35,0.378]	chr7	331602	25	INTRON	INTRON	PMS2P3	ENSG00000127957.19	ENST00000693762.1:ENST00000394921.8:ENST00000430602.5:ENST00000418756.5:ENST00000437568.6:ENST00000533167.5:ENST00000691440.1:ENST00000422064.1:ENST00000438326.2	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript	4	70	2	1.87726	2.73006	3.58286	0.0297629	6.77448e-4	0.12908	0.0236287
chr16	58527324	58527422	6495292	0	-	0.479592	(0.476,0.515]	chr16	628400	8	INTRON	INTRON	CNOT1	ENSG00000125107.19	ENST00000317147.10:ENST00000563130.5:ENST00000569240.5:ENST00000567188.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	53	2	2.26034	2.7300449999999996	3.19975	0.0166235	0.00383299	0.110511	0.0542786
chr2	47802919	47803019	777241	0	+	0.51	(0.476,0.515]	chr2	87436	1	SS3_PROX	SS3_PROX:INTRON	MSH6	ENSG00000116062.18	ENST00000652107.1:ENST00000445503.5:ENST00000614496.4:ENST00000234420.11:ENST00000673637.1:ENST00000540021.6:ENST00000538136.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	53	2	2.26034	2.7300449999999996	3.19975	0.0166235	0.00383299	0.110511	0.0542786
chr2	121655905	121656005	860599	0	+	0.48	(0.476,0.515]	chr2	96532	30	INTRON	INTRON	NIFK-AS1	ENSG00000236859.8	ENST00000667483.1:ENST00000662168.1:ENST00000654001.1:ENST00000659307.1:ENST00000419902.3:ENST00000690074.1:ENST00000666647.1	lncRNA	lncRNA	lncRNA	lncRNA	3	53	2	2.26034	2.7300449999999996	3.19975	0.0166235	0.00383299	0.110511	0.0542786
chr18	13041538	13041620	6877087	0	+	0.304878	(0.28,0.32]	chr18	681422	2	INTRON	INTRON	CEP192	ENSG00000101639.19	ENST00000325971.12:ENST00000506447.5:ENST00000589596.5:ENST00000513432.5:ENST00000511820.6:ENST00000510237.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	109	2	2.56291	2.7299949999999997	2.89708	0.00257346	0.00227849	0.0451443	0.0437013
chr2	130131680	130131779	863589	0	+	0.30303	(0.28,0.32]	chr2	96903	15	INTRON	INTRON	MED15P9	ENSG00000223760.4	ENST00000427638.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	5	109	2	2.56291	2.7299949999999997	2.89708	0.00257346	0.00227849	0.0451443	0.0437013
chr11	9483245	9483345	4730323	0	+	0.41	(0.408,0.44]	chr11	438022	33	INTRON	INTRON	ZNF143	ENSG00000166478.10	ENST00000396604.5:ENST00000530463.5:ENST00000396597.7:ENST00000396602.7:ENST00000299606.6	protein_coding	protein_coding	protein_coding	protein_coding	3	56	2	2.51492	2.729865	2.94481	0.0329839	0.00110214	0.133816	0.03038
chr2	235604819	235604919	1042445	0	+	0.54	(0.515,0.57]	chr2	111222	799	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1:ENST00000402604.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	61	2	2.53845	2.7298	2.92115	0.00632226	0.00110258	0.0687526	0.03038
chr19	52192300	52192400	7094282	0	+	0.47	(0.44,0.476]	chr19	711167	10	INTRON	INTRON	PPP2R1A	ENSG00000105568.18	ENST00000490868.5:ENST00000454220.6:ENST00000322088.11:ENST00000628959.1:ENST00000468280.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	79	2	2.21079	2.72975	3.24871	0.0194581	3.52936e-4	0.119831	0.0174637
chr7	44846295	44846393	3528666	0	-	0.520408	(0.515,0.57]	chr7	329123	26	INTRON	INTRON	H2AZ2	ENSG00000105968.19	ENST00000222690.10:ENST00000437072.5:ENST00000308153.9:ENST00000350771.7:ENST00000349299.7:ENST00000381124.9:ENST00000521529.5:ENST00000446531.1	protein_coding	protein_coding	protein_coding	protein_coding	4	61	2	2.67733	2.729705	2.78208	0.00366712	0.00209264	0.0535094	0.0424943
chr6	170584054	170584140	3267782	0	-	0.488372	(0.476,0.515]	chr6	303424	1	EXON_LNCRNA	EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PDCD2	ENSG00000071994.11	ENST00000541970.6:ENST00000167218.9:ENST00000392090.6:ENST00000545869.5:ENST00000542896.5:ENST00000544866.5:ENST00000539212.5:ENST00000538195.1:ENST00000453163.6:ENST00000537445.5:ENST00000544336.5:ENST00000614056.4:ENST00000443345.2:ENST00000544755.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	53	2	2.10874	2.729665	3.35059	0.0285608	0.00171515	0.12666	0.0381936
chr18	9117038	9117137	6868737	0	+	0.545455	(0.515,0.57]	chr18	680510	117	INTRON	INTRON	NDUFV2	ENSG00000178127.13	ENST00000577703.1:ENST00000318388.11:ENST00000583375.5:ENST00000400033.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	72	967	2	2.60848	2.72966	2.85084	2.41142e-6	5.66152e-8	0.00108305	1.02589e-4
chr9	37166430	37166530	4118119	0	+	0.31	(0.28,0.32]	chr9	375384	63	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000322831.6:ENST00000461038.5:ENST00000488607.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	132	2	2.68839	2.72938	2.7703700000000002	0.00201131	8.96564e-4	0.04086	0.0273866
chr17	61852614	61852712	6808831	0	-	0.428571	(0.408,0.44]	chr17	672623	30	INTRON	INTRON	BRIP1	ENSG00000136492.10	ENST00000259008.7:ENST00000682755.1:ENST00000682453.1:ENST00000683039.1:ENST00000682989.1:ENST00000682589.1:ENST00000683235.1:ENST00000682477.1:ENST00000577598.5:ENST00000584322.2:ENST00000683381.1:ENST00000577913.2:ENST00000682369.1:ENST00000683672.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	54	2	2.71911	2.72926	2.73941	0.0189489	0.002744	0.108861	0.0484022
chr3	177138537	177138637	1871856	0	-	0.53	(0.515,0.57]	chr3	187422	24	INTRON	INTRON	TBL1XR1	ENSG00000177565.18	ENST00000457928.7:ENST00000430069.5:ENST00000673974.1:ENST00000352800.10:ENST00000422442.6:ENST00000428970.5:ENST00000424913.5:ENST00000437738.5:ENST00000431421.5:ENST00000635794.1:ENST00000630796.2:ENST00000450267.5:ENST00000630833.2:ENST00000431674.5:ENST00000422066.5:ENST00000443315.5:ENST00000627825.2:ENST00000427349.5:ENST00000413084.5:ENST00000637137.1:ENST00000491623.2:ENST00000637544.1:ENST00000636187.1:ENST00000636912.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	10	116	2	1.98691	2.729255	3.4716	0.00195343	7.76698e-5	0.0411469	0.00786812
chr1	153914173	153914273	557679	0	-	0.43	(0.408,0.44]	chr1	65996	1	SS5_PROX	SS5_PROX:INTRON	GATAD2B	ENSG00000143614.10	ENST00000368655.5:ENST00000634544.1:ENST00000634408.1:ENST00000634401.1:ENST00000634791.1:ENST00000637331.1:ENST00000636008.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	196	2	2.61715	2.72917	2.84119	1.26935e-4	8.88389e-5	0.0102085	0.00793332
chr22	19426007	19426106	7554368	0	-	0.333333	(0.32,0.35]	chr22	772317	149	INTRON	INTRON	HIRA:C22orf39	ENSG00000100084.14:ENSG00000242259.9	ENST00000263208.5:ENST00000340170.8:ENST00000509549.5:ENST00000464189.5:ENST00000452818.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	88	2	2.00036	2.7290400000000004	3.45772	0.012813	0.00128487	0.0926667	0.0333518
chr19	210266	210366	7108791	0	-	0.38	(0.378,0.408]	chr19	713686	4	SS3_PROX	SS3_PROX:INTRON	LINC01002	ENSG00000282508.2	ENST00000631772.1:ENST00000633151.1:ENST00000631644.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	3	55	2	2.35527	2.729005	3.10274	0.0121511	0.00586642	0.0963966	0.0668095
chr1	37547726	37547825	424201	0	-	0.333333	(0.32,0.35]	chr1	51278	63	INTRON	INTRON	SNIP1	ENSG00000163877.11	ENST00000296215.8:ENST00000468040.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	94	2	1.81892	2.728945	3.63897	0.0134787	9.34231e-4	0.101363	0.0280484
chr1	17411231	17411329	384692	0	-	0.55102	(0.515,0.57]	chr1	45443	8	INTRON	INTRON	RCC2	ENSG00000179051.14	ENST00000375436.9:ENST00000375433.3	protein_coding	protein_coding	protein_coding	protein_coding	9	127	2	2.48387	2.7289250000000003	2.97398	6.04008e-4	5.90767e-5	0.0226059	0.00631069
chr14	21242055	21242155	5834892	0	-	0.33	(0.32,0.35]	chr14	554459	52	INTRON	INTRON	HNRNPC	ENSG00000092199.19	ENST00000336053.10:ENST00000553300.6:ENST00000554969.5:ENST00000556142.5:ENST00000554455.5:ENST00000430246.6:ENST00000553753.5:ENST00000555309.5:ENST00000555914.5:ENST00000557442.5:ENST00000556628.5:ENST00000556513.5:ENST00000555883.5:ENST00000557201.5:ENST00000556897.5:ENST00000420743.6:ENST00000554539.5:ENST00000554383.5:ENST00000555215.5:ENST00000555137.5:ENST00000554891.5:ENST00000556226.5:ENST00000555176.5:ENST00000553614.5:ENST00000557336.1:ENST00000557768.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	127	2	2.38577	2.7289	3.07203	0.00114552	0.00109373	0.0311766	0.0304174
chr1	51762962	51763060	100874	0	+	0.346939	(0.32,0.35]	chr1	13345	6	INTRON	INTRON	OSBPL9	ENSG00000117859.19	ENST00000371714.5:ENST00000428468.6:ENST00000447887.5:ENST00000495776.5:ENST00000435274.6:ENST00000453295.5:ENST00000489990.5:ENST00000532975.5:ENST00000531828.5:ENST00000361556.9:ENST00000526917.5:ENST00000462759.5:ENST00000486942.5:ENST00000528603.5:ENST00000475697.5:ENST00000531061.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	46	2	2.37794	2.728845	3.07975	0.0498601	0.00554235	0.156383	0.0674105
chr7	121173534	121173634	3395504	0	+	0.35	(0.32,0.35]	chr7	317781	235	INTRON	INTRON	CPED1	ENSG00000106034.18	ENST00000310396.10:ENST00000450913.6:ENST00000423795.5:ENST00000466055.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	46	2	2.37794	2.728845	3.07975	0.0498601	0.00554235	0.156383	0.0674105
chr5	53961416	53961516	2617418	0	-	0.45	(0.44,0.476]	chr5	248835	494	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	149	2	2.65397	2.728815	2.80366	3.06617e-4	2.19841e-4	0.0161362	0.0130082
chr1	38022298	38022398	74368	0	+	0.33	(0.32,0.35]	chr1	9613	2	SS3_PROX	SS3_PROX:INTRON	UTP11	ENSG00000183520.12	ENST00000373014.5:ENST00000488453.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	87	2	1.91908	2.7288099999999997	3.53854	0.0169079	9.09596e-4	0.103859	0.0277043
chr11	5392878	5392978	4897148	0	-	0.33	(0.32,0.35]	chr11	459187	456	INTRON	INTRON	HBG2:ENSG00000239920:HBE1:OR51B5	ENSG00000196565.15:ENSG00000239920.2:ENSG00000213931.7:ENSG00000167355.8	ENST00000380252.6:ENST00000380259.7:ENST00000292896.3:ENST00000380237.5:ENST00000420726.6:ENST00000420465.6:ENST00000415970.6:ENST00000418729.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:nonsense_mediated_decay:processed_transcript	5	87	2	1.91908	2.7288099999999997	3.53854	0.0169079	9.09596e-4	0.103859	0.0277043
chr6	140193873	140193973	2968394	0	+	0.36	(0.35,0.378]	chr6	279015	448	INTRON	INTRON	ENSG00000288714	ENSG00000288714.1	ENST00000683950.1	lncRNA	lncRNA	lncRNA	lncRNA	4	80	2	2.54421	2.7286900000000003	2.91317	0.00630238	0.00189062	0.0722266	0.0392053
chr7	107075406	107075506	3377474	0	+	0.47	(0.44,0.476]	chr7	316248	47	INTRON	INTRON	PRKAR2B	ENSG00000005249.13	ENST00000265717.5:ENST00000393613.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	81	2	2.02421	2.72863	3.43305	0.00536295	0.00159668	0.0663076	0.0364566
chr21	6261640	6261740	7425255	0	-	0.58	(0.57,1]	chr21	757453	64	INTRON	INTRON	ENSG00000275496	ENSG00000275496.4	ENST00000621924.4:ENST00000617746.4:ENST00000624446.1:ENST00000623405.3:ENST00000623575.3:ENST00000623506.1	lncRNA	lncRNA	lncRNA	lncRNA	2	23	2	2.36411	2.7286200000000003	3.09313	0.0408868	0.00369015	0.161534	0.0535094
chr5	78084248	78084348	2649012	0	-	0.44	(0.408,0.44]	chr5	251637	399	INTRON	INTRON	AP3B1	ENSG00000132842.15	ENST00000519295.6:ENST00000255194.11:ENST00000695515.1:ENST00000695454.1:ENST00000695511.1:ENST00000695453.1:ENST00000695455.1:ENST00000695513.1:ENST00000695488.1:ENST00000695450.1:ENST00000695507.1:ENST00000695506.1:ENST00000695512.1:ENST00000695510.1:ENST00000695451.1:ENST00000695447.1:ENST00000695458.1:ENST00000695505.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	77	2	2.50424	2.7286	2.95296	0.00929354	0.00101099	0.0817766	0.0293364
chr10	27149838	27149938	4586246	0	-	0.49	(0.476,0.515]	chr10	422781	4	INTRON	INTRON	YME1L1	ENSG00000136758.20	ENST00000376016.8:ENST00000613434.4:ENST00000326799.7:ENST00000491542.6:ENST00000427324.5:ENST00000396296.7:ENST00000477432.1	protein_coding	protein_coding	protein_coding	protein_coding	4	64	2	2.05714	2.728585	3.40003	0.0156961	0.00139193	0.101453	0.0341261
chr14	22833750	22833830	5656528	0	+	0.4375	(0.408,0.44]	chr14	539363	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MRPL52	ENSG00000172590.18	ENST00000355151.9:ENST00000397496.7:ENST00000556654.5:ENST00000555345.5:ENST00000432849.7:ENST00000553711.5:ENST00000556465.5:ENST00000397505.2:ENST00000557221.1:ENST00000311892.10:ENST00000556840.5:ENST00000555536.1:ENST00000553965.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	57	2	1.93243	2.72857	3.52471	0.0441194	0.00112428	0.162255	0.0306963
chr3	37284827	37284925	1396173	0	+	0.520408	(0.515,0.57]	chr3	146339	22	INTRON	INTRON	GOLGA4	ENSG00000144674.17	ENST00000435830.6:ENST00000444882.5:ENST00000356847.8:ENST00000450863.6:ENST00000361924.7:ENST00000429018.5:ENST00000419177.3:ENST00000437131.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	150	2	2.06609	2.72857	3.39105	0.00211745	3.43161e-6	0.0416504	0.00120545
chr6	160065987	160066085	3023976	0	+	0.44898	(0.44,0.476]	chr6	282173	7	INTRON	INTRON	IGF2R	ENSG00000197081.16	ENST00000676781.1:ENST00000677704.1:ENST00000356956.6:ENST00000650503.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	54	2	2.67572	2.728505	2.78129	0.0212064	0.00229634	0.113017	0.0439319
chr12	108719955	108720055	5406670	0	-	0.48	(0.476,0.515]	chr12	516035	170	INTRON	INTRON	CORO1C	ENSG00000110880.11	ENST00000261401.8:ENST00000541050.5:ENST00000549384.5:ENST00000550542.5:ENST00000552871.5:ENST00000551550.5:ENST00000546571.5:ENST00000551044.1:ENST00000551059.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	73	2	1.75142	2.728475	3.70553	0.0259024	3.44823e-4	0.121522	0.0165103
chr2	107730846	107730946	1205858	0	-	0.36	(0.35,0.378]	chr2	128532	132	INTRON	INTRON	LINC01885:ENSG00000286769	ENSG00000237880.2:ENSG00000286769.1	ENST00000654481.1:ENST00000669817.1	lncRNA	lncRNA	lncRNA	lncRNA	10	178	2	2.67113	2.728435	2.78574	4.2339e-4	1.24966e-4	0.0189958	0.00954818
chr10	124781660	124781760	4712445	0	-	0.27	[0,0.28]	chr10	434817	65	INTRON	INTRON	EEF1AKMT2	ENSG00000203791.15	ENST00000652548.1:ENST00000466270.5:ENST00000368836.7:ENST00000464099.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	94	2	2.55703	2.728425	2.89982	0.0158893	0.00276846	0.101453	0.048706
chr2	235746712	235746810	1043873	0	+	0.561224	(0.515,0.57]	chr2	111260	15	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1:ENST00000409538.5:ENST00000614409.4:ENST00000619456.4:ENST00000428334.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	46	2	2.08547	2.72836	3.37125	0.0289426	0.00136343	0.1274	0.0339121
chr2	55016513	55016613	1121067	0	-	0.48	(0.476,0.515]	chr2	120149	21	INTRON	INTRON	RTN4	ENSG00000115310.19	ENST00000404909.5:ENST00000394611.6:ENST00000317610.11:ENST00000357732.8:ENST00000337526.11:ENST00000357376.7:ENST00000405240.5:ENST00000438462.1	protein_coding	protein_coding	protein_coding	protein_coding	17	257	2	2.57727	2.72832	2.87937	9.30291e-5	2.23946e-5	0.00857086	0.0036973
chr1	27474696	27474796	406610	0	-	0.46	(0.44,0.476]	chr1	48986	454	INTRON	INTRON	WASF2	ENSG00000158195.11	ENST00000618852.5:ENST00000536657.1	protein_coding	protein_coding	protein_coding	protein_coding	8	130	2	2.5914	2.7283049999999998	2.86521	5.69284e-4	3.14221e-4	0.0220462	0.0159645
chr2	96899528	96899627	1182224	0	-	0.50505	(0.476,0.515]	chr2	126735	15	INTRON	INTRON	FAM178B	ENSG00000168754.15	ENST00000490605.3	protein_coding	protein_coding	protein_coding	protein_coding	4	65	2	2.21025	2.728275	3.2463	0.00913757	0.00262374	0.0812335	0.0470772
chr20	2653649	2653734	7222209	0	+	0.435294	(0.408,0.44]	chr20	733827	4	EXON_LNCRNA	EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NOP56	ENSG00000101361.17	ENST00000651302.1:ENST00000329276.10:ENST00000494697.5:ENST00000470143.1:ENST00000469588.5:ENST00000445139.1:ENST00000460258.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	23	398	2	2.44215	2.728265	3.01438	6.93975e-5	2.94454e-6	0.00690574	0.00120829
chr16	71913114	71913213	6386783	0	+	0.353535	(0.35,0.378]	chr16	614084	91	INTRON	INTRON	IST1	ENSG00000182149.21	ENST00000568581.5:ENST00000540296.5:ENST00000544564.5:ENST00000541571.6:ENST00000538104.5:ENST00000535424.5:ENST00000606369.5:ENST00000537613.5:ENST00000424485.6:ENST00000566536.5:ENST00000378799.11:ENST00000538565.5:ENST00000329908.12:ENST00000538850.5:ENST00000541918.5:ENST00000378798.9:ENST00000534994.5:ENST00000539186.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	69	2	2.24196	2.72826	3.21456	0.00744693	0.00420814	0.0772645	0.0572185
chr1	32678539	32678638	66118	0	+	0.272727	[0,0.28]	chr1	8465	46	INTRON	INTRON	RBBP4	ENSG00000162521.19	ENST00000414241.7:ENST00000373493.10:ENST00000492348.6:ENST00000373485.5:ENST00000458695.6:ENST00000463378.5:ENST00000460669.5:ENST00000482190.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	128	2	2.31716	2.728195	3.13923	0.00702731	0.00131862	0.0754576	0.0331539
chr3	12657749	12657849	1617369	0	-	0.28	[0,0.28]	chr3	166996	83	INTRON	INTRON	RAF1	ENSG00000132155.14	ENST00000688543.1:ENST00000685348.1:ENST00000251849.9:ENST00000442415.7:ENST00000688444.1:ENST00000692093.1:ENST00000691724.1:ENST00000423275.6:ENST00000687326.1:ENST00000688803.1:ENST00000689876.1:ENST00000686455.1:ENST00000684903.1:ENST00000693312.1:ENST00000690460.1:ENST00000692773.1:ENST00000688625.1:ENST00000693664.1:ENST00000686762.1:ENST00000692311.1:ENST00000692558.1:ENST00000691779.1:ENST00000685738.1:ENST00000690397.1:ENST00000687923.1:ENST00000688269.1:ENST00000693705.1:ENST00000689097.1:ENST00000691899.1:ENST00000689914.1:ENST00000690625.1:ENST00000689389.1:ENST00000687257.1:ENST00000686409.1:ENST00000685653.1:ENST00000689540.1:ENST00000691396.1:ENST00000685437.1:ENST00000689418.1:ENST00000687940.1:ENST00000689481.1:ENST00000491290.2:ENST00000686479.1:ENST00000689033.1:ENST00000692777.1:ENST00000689226.1:ENST00000691718.1:ENST00000692959.1:ENST00000685740.1:ENST00000688753.1:ENST00000688779.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	106	2	1.80873	2.72819	3.64765	0.0234525	0.00144832	0.128429	0.034341000000000003
chr1	1389147	1389246	359802	0	-	0.484848	(0.476,0.515]	chr1	41765	1	SS3_PROX	SS3_PROX:INTRON	CCNL2	ENSG00000221978.13	ENST00000400809.8:ENST00000480479.5:ENST00000482621.5:ENST00000496007.5:ENST00000482365.5:ENST00000481223.6:ENST00000418865.6:ENST00000505849.5:ENST00000488340.5:ENST00000492998.5:ENST00000469113.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	135	2	2.50488	2.728125	2.95137	0.00285353	3.66409e-5	0.0474836	0.00484751
chr3	17606251	17606351	1629061	0	-	0.5	(0.476,0.515]	chr3	168235	193	INTRON	INTRON	TBC1D5	ENSG00000131374.15	ENST00000253692.11:ENST00000696125.1:ENST00000414318.2:ENST00000429383.8:ENST00000446818.6:ENST00000415814.6:ENST00000452492.6:ENST00000412981.5:ENST00000428355.5:ENST00000425944.5:ENST00000430169.5:ENST00000445294.5:ENST00000414349.5:ENST00000443499.6:ENST00000444756.5:ENST00000497531.5:ENST00000443386.5:ENST00000507877.5:ENST00000446863.5:ENST00000434420.1:ENST00000444471.5:ENST00000486224.5:ENST00000433533.5:ENST00000481396.5:ENST00000480435.5:ENST00000423331.6:ENST00000485432.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	40	2	2.3223	2.7280949999999997	3.13389	0.0519312	0.00405473	0.159306	0.0578376
chr3	48526169	48526268	1688599	0	-	0.535354	(0.515,0.57]	chr3	172531	1	INTRON	INTRON	PFKFB4	ENSG00000114268.12	ENST00000232375.8:ENST00000490115.5:ENST00000383734.6:ENST00000416568.5:ENST00000417753.5:ENST00000445633.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	11	141	2	2.15237	2.72804	3.30371	9.88375e-4	2.52567e-5	0.0287748	0.00394111
chr3	141911458	141911557	1526427	0	+	0.383838	(0.378,0.408]	chr3	159025	38	INTRON	INTRON	ATP1B3	ENSG00000069849.11	ENST00000475483.5:ENST00000465172.5:ENST00000286371.8:ENST00000466678.5:ENST00000462082.1:ENST00000495216.1:ENST00000482635.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	67	2	1.73164	2.727805	3.72397	0.0441773	3.23378e-4	0.149888	0.0159645
chr7	127733897	127733997	3403229	0	+	0.38	(0.378,0.408]	chr7	318134	121	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000468166.5:ENST00000465900.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	67	2	1.73164	2.727805	3.72397	0.0441773	3.23378e-4	0.149888	0.0159645
chr12	62293278	62293378	5149878	0	+	0.31	(0.28,0.32]	chr12	487287	142	INTRON	INTRON	USP15	ENSG00000135655.16	ENST00000353364.7:ENST00000549523.5:ENST00000550632.5:ENST00000312635.10:ENST00000548524.5:ENST00000280377.10:ENST00000551206.5:ENST00000546718.5:ENST00000537297.2:ENST00000549237.5:ENST00000548836.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	50	2	2.32871	2.727755	3.1268	0.0581621	0.00508956	0.167723	0.0646039
chr14	45115304	45115401	5714854	0	+	0.309278	(0.28,0.32]	chr14	542530	5	UTR3	UTR3:EXON_MRNA	PRPF39	ENSG00000185246.18	ENST00000355765.11:ENST00000477626.5:ENST00000424478.5:ENST00000554439.5:ENST00000554429.5:ENST00000554081.5:ENST00000554785.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	50	2	2.32871	2.727755	3.1268	0.0581621	0.00508956	0.167723	0.0646039
chr20	34517575	34517675	7260693	0	+	0.3	(0.28,0.32]	chr20	737591	3	INTRON	INTRON	ITCH:DYNLRB1	ENSG00000078747.16:ENSG00000125971.17	ENST00000664852.1:ENST00000480759.1:ENST00000357156.7:ENST00000300469.13:ENST00000374846.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	50	2	2.32871	2.727755	3.1268	0.0581621	0.00508956	0.167723	0.0646039
chr19	36222177	36222277	7057495	0	+	0.4	(0.378,0.408]	chr19	704664	36	INTRON	INTRON	ZNF146	ENSG00000167635.12	ENST00000456324.5:ENST00000591063.5:ENST00000443387.3:ENST00000586094.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	41	2	2.46373	2.727715	2.9917	0.0382831	0.0068789	0.141795	0.0749442
chr8	21968982	21969082	3711415	0	+	0.38	(0.378,0.408]	chr8	344411	1	SS3_PROX	SS3_PROX:INTRON	XPO7	ENSG00000130227.17	ENST00000252512.14:ENST00000521303.5:ENST00000519769.5:ENST00000518017.1:ENST00000433566.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	41	2	2.46373	2.727715	2.9917	0.0382831	0.0068789	0.141795	0.0749442
chrX	134499084	134499184	7724466	0	+	0.38	(0.378,0.408]	chrX	790193	4	SS5_PROX	SS5_PROX:INTRON	HPRT1	ENSG00000165704.15	ENST00000298556.8:ENST00000475720.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	41	2	2.46373	2.727715	2.9917	0.0382831	0.0068789	0.141795	0.0749442
chr3	5216312	5216410	1354488	0	+	0.469388	(0.44,0.476]	chr3	142483	5	UTR3	UTR3:EXON_MRNA	EDEM1	ENSG00000134109.11	ENST00000256497.9	protein_coding	protein_coding	protein_coding	protein_coding	9	145	2	2.72256	2.7277050000000003	2.73285	0.00111786	7.27953e-5	0.0306954	0.00711523
chr22	49475398	49475498	7600833	0	-	0.41	(0.408,0.44]	chr22	778566	338	INTRON	INTRON	MIR3667HG	ENSG00000188511.13	ENST00000414287.5:ENST00000416411.1	lncRNA	lncRNA	lncRNA	lncRNA	4	64	2	2.08376	2.72769	3.37162	0.0129886	0.00208674	0.0991656	0.0411801
chr2	241311107	241311207	1348524	0	-	0.31	(0.28,0.32]	chr2	141652	85	INTRON	INTRON	HDLBP	ENSG00000115677.18	ENST00000310931.10:ENST00000391976.6:ENST00000428482.5:ENST00000441124.5:ENST00000413241.5:ENST00000423693.5:ENST00000425989.5:ENST00000420451.5:ENST00000417540.5:ENST00000462130.1:ENST00000496569.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	251	2	2.21032	2.7276749999999996	3.24503	0.00224505	1.10162e-5	0.0424511	0.00244464
chrX	73846729	73846829	7837991	0	-	0.44	(0.408,0.44]	chrX	799611	94	EXON_LNCRNA	EXON_LNCRNA:INTRON	XIST	ENSG00000229807.13	ENST00000650627.1:ENST00000434839.3:ENST00000429829.6:ENST00000650186.1:ENST00000635841.2:ENST00000650637.1:ENST00000648970.1	lncRNA	lncRNA	lncRNA	lncRNA	31	480	2	2.59445	2.7276350000000003	2.86082	1.04173e-5	4.97799e-6	0.00252871	0.00151644
chr9	124395271	124395370	4346453	0	-	0.40404	(0.378,0.408]	chr9	399165	103	INTRON	INTRON	PSMB7	ENSG00000136930.13	ENST00000259457.8:ENST00000498485.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	74	2	2.66643	2.72755	2.78867	0.00470023	0.00226991	0.0600108	0.0437013
chr10	125072310	125072410	4713452	0	-	0.48	(0.476,0.515]	chr10	434897	328	INTRON	INTRON	CTBP2	ENSG00000175029.17	ENST00000337195.9:ENST00000411419.6:ENST00000494626.6:ENST00000531469.5:ENST00000460976.5:ENST00000476817.1:ENST00000530884.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	40	2	2.56868	2.72749	2.8863	0.0256676	0.0111679	0.133676	0.0877435
chr12	53575496	53575596	5328506	0	-	0.49	(0.476,0.515]	chr12	508398	225	INTRON	INTRON	ATF7	ENSG00000170653.19	ENST00000548446.6:ENST00000420353.7:ENST00000456903.8:ENST00000588232.5:ENST00000551480.2:ENST00000588078.5:ENST00000591397.1:ENST00000548118.6	protein_coding	protein_coding	protein_coding	protein_coding	2	40	2	2.56868	2.72749	2.8863	0.0256676	0.0111679	0.133676	0.0877435
chr19	1390000	1390097	6995030	0	+	0.484536	(0.476,0.515]	chr19	693148	12	EXON_MRNA	EXON_MRNA:INTRON	NDUFS7	ENSG00000115286.21	ENST00000546283.5:ENST00000545446.5:ENST00000543289.5:ENST00000539480.5:ENST00000538662.5:ENST00000313408.11:ENST00000436115.6:ENST00000233627.14:ENST00000534853.5:ENST00000546172.7:ENST00000414651.3:ENST00000538929.5:ENST00000622587.4:ENST00000538523.5:ENST00000540530.5:ENST00000535382.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	40	2	2.56868	2.72749	2.8863	0.0256676	0.0111679	0.133676	0.0877435
chr2	86173417	86173507	1170944	0	-	0.5	(0.476,0.515]	chr2	124983	4	SS5_PROX	SS5_PROX:INTRON	IMMT	ENSG00000132305.22	ENST00000449247.6:ENST00000254636.9:ENST00000410111.8:ENST00000442664.6:ENST00000419070.6:ENST00000409051.6:ENST00000474969.5:ENST00000409258.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	40	2	2.56868	2.72749	2.8863	0.0256676	0.0111679	0.133676	0.0877435
chr8	41746850	41746950	3938551	0	-	0.42	(0.408,0.44]	chr8	361117	124	INTRON	INTRON	ANK1	ENSG00000029534.21	ENST00000347528.8:ENST00000265709.13:ENST00000289734.13	protein_coding	protein_coding	protein_coding	protein_coding	5	86	2	2.33039	2.7274849999999997	3.12458	0.00598147	4.61817e-4	0.0674604	0.0194611
chr12	4277874	4277970	5067449	0	+	0.385417	(0.378,0.408]	chr12	478280	13	INTRON	INTRON	CCND2	ENSG00000118971.9	ENST00000676411.1:ENST00000676279.1:ENST00000261254.8:ENST00000675880.1:ENST00000536537.2:ENST00000675468.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	41	2	2.66785	2.72745	2.78705	0.0224639	0.0135539	0.11692	0.101363
chr16	16541403	16541503	6311276	0	+	0.38	(0.378,0.408]	chr16	604098	414	INTRON	INTRON	ENSG00000260126	ENSG00000260126.2	ENST00000567465.2	lncRNA	lncRNA	lncRNA	lncRNA	2	41	2	2.66785	2.72745	2.78705	0.0224639	0.0135539	0.11692	0.101363
chr10	49874811	49874910	4615524	0	-	0.363636	(0.35,0.378]	chr10	425172	49	INTRON	INTRON	PARG	ENSG00000227345.9	ENST00000402038.7:ENST00000616448.2:ENST00000614063.4:ENST00000610922.1:ENST00000611974.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	60	2	1.75561	2.727445	3.69928	0.0739399	3.94786e-4	0.190914	0.0178567
chr1	31062615	31062715	412869	0	-	0.36	(0.35,0.378]	chr1	49752	8	INTRON	INTRON	PUM1	ENSG00000134644.16	ENST00000426105.7:ENST00000373747.7:ENST00000257075.9:ENST00000424085.6:ENST00000525843.5:ENST00000440538.6:ENST00000373741.8:ENST00000373742.6:ENST00000526215.5:ENST00000525948.5:ENST00000480602.1:ENST00000524516.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	61	2	1.9755	2.727415	3.47933	0.0398617	0.0015613	0.161534	0.0360352
chr7	158813856	158813956	3689657	0	-	0.36	(0.35,0.378]	chr7	342421	144	INTRON	INTRON	ESYT2	ENSG00000117868.18	ENST00000251527.10:ENST00000275418.13:ENST00000652148.1:ENST00000483958.5:ENST00000497111.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	93	2	2.66007	2.727395	2.79472	0.00303911	0.00123668	0.0493883	0.0326427
chr20	17963439	17963538	7320518	0	-	0.464646	(0.44,0.476]	chr20	745337	6	INTRON	INTRON	SNX5	ENSG00000089006.17	ENST00000377768.7:ENST00000490175.5:ENST00000377759.9:ENST00000431277.5:ENST00000419004.2:ENST00000474883.5:ENST00000469704.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	88	2	1.8376	2.7273899999999998	3.61718	0.00813403	7.37432e-4	0.0810802	0.02495
chr7	127833237	127833337	3404223	0	+	0.42	(0.408,0.44]	chr7	318140	253	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000468166.5:ENST00000465900.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	65	2	1.93002	2.727365	3.52471	0.022095	0.00112428	0.123903	0.0306963
chr16	4470461	4470549	6437579	0	-	0.284091	(0.28,0.32]	chr16	619901	4	INTRON	INTRON	NMRAL1	ENSG00000153406.14	ENST00000574733.5:ENST00000283429.11:ENST00000404295.7:ENST00000574425.5:ENST00000571291.5:ENST00000573520.5:ENST00000573571.1:ENST00000575002.5:ENST00000575557.5:ENST00000576935.5:ENST00000575995.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	50	2	2.67453	2.727285	2.78004	0.021289	0.0193244	0.123318	0.108861
chr1	29166164	29166228	410284	0	-	0.359375	(0.35,0.378]	chr1	49409	1	SS3_PROX	SS3_PROX:INTRON	SRSF4	ENSG00000116350.18	ENST00000373795.7:ENST00000691479.1:ENST00000634348.1:ENST00000466448.4:ENST00000605204.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	89	2	1.63783	2.72728	3.81673	0.0250627	3.76372e-4	0.133086	0.0179911
chr5	132180661	132180761	2720786	0	-	0.39	(0.378,0.408]	chr5	255746	3	SS5_PROX	SS5_PROX:INTRON	ENSG00000224015	ENSG00000224015.1	ENST00000457890.1	lncRNA	lncRNA	lncRNA	lncRNA	7	93	2	1.48475	2.7272600000000002	3.96977	0.0353336	9.19167e-5	0.137535	0.00801007
chr13	95139796	95139896	5638238	0	-	0.38	(0.378,0.408]	chr13	537056	234	INTRON	INTRON	ABCC4	ENSG00000125257.16	ENST00000645237.2:ENST00000643051.1:ENST00000643842.1:ENST00000646439.1:ENST00000644880.1:ENST00000643816.1:ENST00000536256.3:ENST00000643556.1:ENST00000629385.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	66	2	2.35168	2.72721	3.10274	0.00586642	0.0046563	0.0668095	0.0629753
chr8	90347742	90347842	3793571	0	+	0.33	(0.32,0.35]	chr8	351786	1006	INTRON	INTRON	LINC00534	ENSG00000253394.7	ENST00000662145.1:ENST00000655523.1:ENST00000517400.6:ENST00000658299.1:ENST00000663329.1:ENST00000658342.1:ENST00000523283.6:ENST00000655219.1:ENST00000662692.1:ENST00000667296.1:ENST00000667565.1:ENST00000523406.2:ENST00000659030.1:ENST00000653734.1:ENST00000654785.1:ENST00000524361.5:ENST00000668745.1:ENST00000666641.2:ENST00000661519.1:ENST00000671657.1:ENST00000655123.1:ENST00000663098.1:ENST00000670903.1:ENST00000654946.1	lncRNA	lncRNA	lncRNA	lncRNA	5	101	2	2.40617	2.72713	3.04809	0.0040507	0.00120984	0.0578376	0.0317954
chr2	175072740	175072838	1271360	0	-	0.132653	[0,0.28]	chr2	134374	6	UTR3	UTR3:EXON_MRNA	ATF2	ENSG00000115966.18	ENST00000345739.9:ENST00000426833.7:ENST00000264110.7:ENST00000409437.5	protein_coding	protein_coding	protein_coding	protein_coding	2	56	2	2.54624	2.727105	2.90797	0.0388449	0.0118539	0.143072	0.0962115
chr3	33404400	33404500	1651342	0	-	0.23	[0,0.28]	chr3	169355	11	INTRON	INTRON	UBP1	ENSG00000153560.12	ENST00000283629.8:ENST00000447368.6:ENST00000283628.9:ENST00000486388.5:ENST00000411650.5:ENST00000467613.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	56	2	2.54624	2.727105	2.90797	0.0388449	0.0118539	0.143072	0.0962115
chr7	103307908	103308008	3373217	0	+	0.28	[0,0.28]	chr7	315731	2	SS5_PROX	SS5_PROX:INTRON	PMPCB	ENSG00000105819.14	ENST00000249269.9:ENST00000428154.5:ENST00000456433.5:ENST00000443722.5:ENST00000444457.5:ENST00000498530.5:ENST00000453466.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	56	2	2.54624	2.727105	2.90797	0.0388449	0.0118539	0.143072	0.0962115
chr17	40288532	40288632	6610131	0	+	0.54	(0.515,0.57]	chr17	643781	4	SS5_PROX	SS5_PROX:INTRON	CDC6	ENSG00000094804.12	ENST00000209728.9:ENST00000580824.5:ENST00000577249.1:ENST00000649662.1	protein_coding	protein_coding	protein_coding	protein_coding	3	53	2	2.46104	2.7271	2.99316	0.032841	9.21623e-4	0.145164	0.0278396
chr6	158569722	158569822	3021695	0	+	0.49	(0.476,0.515]	chr6	281792	91	INTRON	INTRON	TMEM181	ENSG00000146433.10	ENST00000367090.4:ENST00000684151.1	protein_coding	protein_coding	protein_coding	protein_coding	5	85	2	2.4132	2.7270849999999998	3.04097	0.00417094	7.0601e-4	0.0570595	0.0241881
chr16	2168957	2169053	6277513	0	+	0.458333	(0.44,0.476]	chr16	600178	4	INTRON	INTRON	TRAF7	ENSG00000131653.13	ENST00000569686.5:ENST00000326181.11:ENST00000564067.5:ENST00000567645.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	71	2	2.67282	2.727055	2.78129	0.00433875	0.00229634	0.0579868	0.0439319
chr16	89714693	89714791	6421613	0	+	0.44898	(0.44,0.476]	chr16	616541	15	INTRON	INTRON	VPS9D1-AS1	ENSG00000261373.1	ENST00000562866.1	lncRNA	lncRNA	lncRNA	lncRNA	9	163	2	2.41628	2.72705	3.03782	0.00156262	3.89651e-5	0.0365263	0.00533644
chr9	131201817	131201917	4216420	0	+	0.44	(0.408,0.44]	chr9	386672	1	SS5_PROX	SS5_PROX:INTRON	NUP214	ENSG00000126883.19	ENST00000695497.1:ENST00000695498.1:ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000524578.6:ENST00000453861.6:ENST00000483497.6:ENST00000695500.1:ENST00000650694.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	109	2	2.20396	2.7270149999999997	3.25007	0.00235889	3.61891e-4	0.0445848	0.0176126
chr1	58656030	58656129	467366	0	-	0.50505	(0.476,0.515]	chr1	56388	14	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	MYSM1	ENSG00000162601.11	ENST00000655340.1:ENST00000493821.6:ENST00000472487.6:ENST00000622766.1:ENST00000665648.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	98	2	2.17892	2.726865	3.27481	0.0046578	2.99781e-4	0.0629753	0.0160591
chr2	28943078	28943177	725683	0	+	0.373737	(0.35,0.378]	chr2	83884	3	INTRON	INTRON	WDR43	ENSG00000163811.12	ENST00000407426.8:ENST00000446643.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	58	2	2.04224	2.726815	3.41139	0.0363073	0.00143263	0.138959	0.0347139
chr3	47832619	47832719	1420275	0	+	0.41	(0.408,0.44]	chr3	149238	16	INTRON	INTRON	DHX30	ENSG00000132153.15	ENST00000395745.6:ENST00000445061.6:ENST00000441384.5:ENST00000348968.8:ENST00000446256.6:ENST00000619982.4:ENST00000457607.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	86	2	2.5027	2.7267900000000003	2.95088	0.00238178	0.00142252	0.0449397	0.0340865
chr15	92935135	92935234	6104046	0	+	0.555556	(0.515,0.57]	chr15	581428	57	INTRON	INTRON	ENSG00000279765:CHD2	ENSG00000279765.3:ENSG00000173575.22	ENST00000630790.1:ENST00000626874.2:ENST00000394196.9:ENST00000635856.1:ENST00000420239.7:ENST00000628375.2:ENST00000625990.3:ENST00000626782.2:ENST00000629136.1:ENST00000637572.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	73	2	2.69048	2.72674	2.763	0.00257143	8.78655e-4	0.045134	0.0269932
chr3	73027815	73027915	1452267	0	+	0.43	(0.408,0.44]	chr3	152962	118	INTRON	INTRON	PPP4R2	ENSG00000163605.15	ENST00000482242.5:ENST00000356692.10:ENST00000470976.1:ENST00000488810.5:ENST00000476505.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	92	2	2.26792	2.726535	3.18515	0.0179973	6.73915e-5	0.106756	0.00679256
chr19	1224711	1224808	6994396	0	+	0.649485	(0.57,1]	chr19	692934	11	UTR3	UTR3:EXON_MRNA:INTRON	STK11	ENSG00000118046.17	ENST00000326873.12:ENST00000589152.5:ENST00000585465.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	29	2	2.13445	2.72652	3.31859	0.0241482	0.00137292	0.12011	0.0340241
chr9	91895790	91895890	4284723	0	-	0.43	(0.408,0.44]	chr9	393921	87	INTRON	INTRON	ROR2	ENSG00000169071.15	ENST00000375715.5:ENST00000375708.4:ENST00000495386.5:ENST00000546883.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	86	2	2.23023	2.7264049999999997	3.2225799999999998	0.0087201	2.79412e-4	0.0788605	0.0148832
chr10	125053935	125054035	4713268	0	-	0.6	(0.57,1]	chr10	434897	144	INTRON	INTRON	CTBP2	ENSG00000175029.17	ENST00000337195.9:ENST00000411419.6:ENST00000494626.6:ENST00000531469.5:ENST00000460976.5:ENST00000476817.1:ENST00000530884.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	22	2	2.53383	2.72636	2.91889	0.02547	0.00719009	0.12011	0.0756118
chr11	2945946	2946046	4891508	0	-	0.65	(0.57,1]	chr11	458260	3	SS3_PROX	SS3_PROX:INTRON	NAP1L4	ENSG00000205531.13	ENST00000620138.4:ENST00000380542.9:ENST00000469805.5:ENST00000469089.5:ENST00000526115.5:ENST00000492594.6:ENST00000526023.5:ENST00000492685.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	22	2	2.53383	2.72636	2.91889	0.02547	0.00719009	0.12011	0.0756118
chr11	68499653	68499753	4817722	0	+	0.59	(0.57,1]	chr11	448907	385	INTRON	INTRON	PPP6R3	ENSG00000110075.15	ENST00000530427.5:ENST00000528635.5:ENST00000529907.5:ENST00000533127.5:ENST00000534534.5:ENST00000529344.5:ENST00000524845.5:ENST00000393800.7:ENST00000265637.8:ENST00000524904.5:ENST00000393801.7:ENST00000265636.9:ENST00000529710.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	22	2	2.53383	2.72636	2.91889	0.02547	0.00719009	0.12011	0.0756118
chr3	15796095	15796195	1623804	0	-	0.28	[0,0.28]	chr3	168021	3	SS5_PROX	SS5_PROX:INTRON	ANKRD28	ENSG00000206560.12	ENST00000399451.6:ENST00000624145.3:ENST00000683139.1:ENST00000412318.5:ENST00000497037.5:ENST00000451422.1:ENST00000498524.5:ENST00000439830.5:ENST00000461696.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	56	2	2.49527	2.72628	2.95729	0.0436497	0.0101824	0.14882	0.089002
chr17	57995347	57995446	6799930	0	-	0.59596	(0.57,1]	chr17	671423	6	INTRON	INTRON	ENSG00000266086	ENSG00000266086.3	ENST00000578794.2:ENST00000665125.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	3	29	2	2.42282	2.726245	3.02967	0.00879576	0.00471306	0.0790073	0.0631419
chr2	61177745	61177840	787240	0	+	0.610526	(0.57,1]	chr2	88618	1	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	AHSA2P	ENSG00000173209.23	ENST00000357022.6:ENST00000463681.1:ENST00000394457.7:ENST00000489653.6:ENST00000642732.1:ENST00000643913.1	transcribed_unitary_pseudogene	retained_intron	transcribed_unitary_pseudogene	retained_intron:processed_transcript:transcribed_unitary_pseudogene	3	29	2	2.42282	2.726245	3.02967	0.00879576	0.00471306	0.0790073	0.0631419
chr8	27515023	27515120	3721424	0	+	0.597938	(0.57,1]	chr8	345846	28	INTRON	INTRON	EPHX2	ENSG00000120915.14	ENST00000517536.5:ENST00000520623.5:ENST00000521400.6:ENST00000521780.5:ENST00000380476.7:ENST00000518379.5:ENST00000521684.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	29	2	2.42282	2.726245	3.02967	0.00879576	0.00471306	0.0790073	0.0631419
chr5	176487183	176487281	2552562	0	+	0.581633	(0.57,1]	chr5	243682	3	INTRON	INTRON	FAF2	ENSG00000113194.13	ENST00000261942.7:ENST00000510446.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	45	2	2.46083	2.72615	2.99147	0.00255312	6.75142e-4	0.0466386	0.0237705
chr10	3120642	3120741	4382079	0	+	0.454545	(0.44,0.476]	chr10	404146	2	INTRON	INTRON	PFKP	ENSG00000067057.18	ENST00000381125.9:ENST00000381075.7:ENST00000678206.1:ENST00000678089.1:ENST00000676796.1:ENST00000415005.6:ENST00000413079.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	18	290	2	2.51309	2.726115	2.93914	1.09551e-4	6.38883e-6	0.00942341	0.00178155
chr20	31559010	31559110	7253436	0	+	0.49	(0.476,0.515]	chr20	736659	38	INTRON	INTRON	HM13	ENSG00000101294.18	ENST00000335574.10:ENST00000674240.1:ENST00000340852.9:ENST00000398174.9:ENST00000649820.1:ENST00000466766.2:ENST00000650367.1:ENST00000344042.5:ENST00000649374.1:ENST00000469126.5:ENST00000492709.5:ENST00000469097.5:ENST00000487964.5:ENST00000649583.1:ENST00000460389.5:ENST00000494153.5:ENST00000483310.5:ENST00000472128.5:ENST00000474466.5:ENST00000468559.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	71	2	2.41121	2.72609	3.04097	0.0110342	7.0601e-4	0.0873897	0.0241881
chr16	87734037	87734137	6538350	0	-	0.63	(0.57,1]	chr16	633530	30	INTRON	INTRON	KLHDC4	ENSG00000104731.14	ENST00000567298.5:ENST00000270583.10:ENST00000347925.9:ENST00000353170.9:ENST00000316853.10:ENST00000566349.5:ENST00000562155.5:ENST00000622456.4:ENST00000562261.1:ENST00000566661.5:ENST00000567513.1:ENST00000564484.5:ENST00000565328.5:ENST00000569747.5:ENST00000564396.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	22	2	2.66801	2.72605	2.78409	0.0169968	0.0116033	0.110899	0.0889104
chr16	89289170	89289265	6541551	0	-	0.642105	(0.57,1]	chr16	634152	1	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000644285.1:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000645212.1:ENST00000646345.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	22	2	2.66801	2.72605	2.78409	0.0169968	0.0116033	0.110899	0.0889104
chr18	12966285	12966384	6876343	0	+	0.575758	(0.57,1]	chr18	681295	14	INTRON	INTRON	SEH1L	ENSG00000085415.16	ENST00000262124.15:ENST00000399892.7:ENST00000585730.5:ENST00000589446.5:ENST00000587761.1:ENST00000588251.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	22	2	2.66801	2.72605	2.78409	0.0169968	0.0116033	0.110899	0.0889104
chr19	1027074	1027174	6993169	0	+	0.64	(0.57,1]	chr19	692501	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	CNN2	ENSG00000064666.15	ENST00000562015.5:ENST00000263097.9:ENST00000348419.7:ENST00000565096.6:ENST00000562958.6:ENST00000569352.6:ENST00000568865.3:ENST00000606983.5:ENST00000607102.1:ENST00000562075.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	22	2	2.66801	2.72605	2.78409	0.0169968	0.0116033	0.110899	0.0889104
chr9	91853173	91853273	4284294	0	-	0.65	(0.57,1]	chr9	393909	770	INTRON	INTRON	ROR2	ENSG00000169071.15	ENST00000375715.5:ENST00000375708.4:ENST00000550066.5:ENST00000495386.5:ENST00000546883.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	22	2	2.66801	2.72605	2.78409	0.0169968	0.0116033	0.110899	0.0889104
chr9	96410255	96410355	4295291	0	-	0.59	(0.57,1]	chr9	394970	116	INTRON	INTRON	ZNF367	ENSG00000165244.7	ENST00000375256.5	protein_coding	protein_coding	protein_coding	protein_coding	2	22	2	2.66801	2.72605	2.78409	0.0169968	0.0116033	0.110899	0.0889104
chr16	58624994	58625094	6496337	0	-	0.53	(0.515,0.57]	chr16	628650	2	SS3_PROX	SS3_PROX:INTRON	CNOT1	ENSG00000125107.19	ENST00000317147.10:ENST00000569240.5:ENST00000567188.5:ENST00000441024.6:ENST00000565605.5:ENST00000564557.1:ENST00000569916.1:ENST00000569020.5:ENST00000568158.1:ENST00000569263.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	73	2	2.3252100000000002	2.7259700000000002	3.12673	0.00525266	3.95089e-4	0.0633615	0.0178567
chr1	224316603	224316701	644786	0	-	0.397959	(0.378,0.408]	chr1	76193	31	INTRON	INTRON	NVL	ENSG00000143748.18	ENST00000391875.6:ENST00000469968.5:ENST00000482491.5:ENST00000281701.11:ENST00000469075.5:ENST00000340871.8:ENST00000467882.5:ENST00000492281.5:ENST00000488718.5:ENST00000436927.5:ENST00000470989.5:ENST00000470903.5:ENST00000461466.5:ENST00000461546.2:ENST00000468673.5:ENST00000487758.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	42	2	2.2259	2.7259450000000003	3.22599	0.0662381	0.00288652	0.181924	0.0494641
chr11	46824663	46824763	4948550	0	-	0.39	(0.378,0.408]	chr11	463853	30	INTRON	INTRON	CKAP5	ENSG00000175216.15	ENST00000529230.6:ENST00000312055.9:ENST00000526496.1:ENST00000525248.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	42	2	2.2259	2.7259450000000003	3.22599	0.0662381	0.00288652	0.181924	0.0494641
chr16	85578840	85578940	6415620	0	+	0.48	(0.476,0.515]	chr16	615470	221	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	14	220	2	2.35942	2.72588	3.09234	3.25701e-4	1.45874e-5	0.0166241	0.00286073
chr9	37189052	37189152	4118347	0	+	0.25	[0,0.28]	chr9	375389	21	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000461038.5:ENST00000488607.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	199	2	1.98988	2.72587	3.46186	0.00356891	3.54957e-4	0.0548435	0.0175154
chr6	35672335	35672435	3087354	0	-	0.24	[0,0.28]	chr6	288789	291	INTRON	INTRON	FKBP5	ENSG00000096060.15	ENST00000536438.5:ENST00000539068.5:ENST00000357266.9:ENST00000542713.1	protein_coding	protein_coding	protein_coding	protein_coding	2	57	2	2.63238	2.7258	2.81922	0.0259691	0.0197411	0.133676	0.109608
chr1	225786361	225786461	327328	0	+	0.29	(0.28,0.32]	chr1	37658	1	SS3_PROX	SS3_PROX:INTRON	SRP9	ENSG00000143742.14	ENST00000626563.2:ENST00000619790.4:ENST00000304786.12:ENST00000650651.1:ENST00000366839.8:ENST00000651465.1:ENST00000651761.1:ENST00000651653.1:ENST00000366838.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	67	2	2.67153	2.725785	2.78004	0.0193244	0.00436402	0.108861	0.060356
chr17	81546808	81546908	6848685	0	-	0.49	(0.476,0.515]	chr17	678066	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	FAAP100	ENSG00000185504.17	ENST00000443656.6:ENST00000425898.2:ENST00000327787.13:ENST00000545865.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	53	2	2.05154	2.725785	3.40003	0.0336015	0.00139193	0.134145	0.0341261
chr3	185774985	185775085	1885848	0	-	0.45	(0.44,0.476]	chr3	188573	763	INTRON	INTRON	IGF2BP2	ENSG00000073792.16	ENST00000382199.7:ENST00000346192.7:ENST00000457616.6:ENST00000421047.3:ENST00000461957.5:ENST00000493302.5:ENST00000466476.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	180	2	2.70252	2.7257749999999996	2.74903	2.59902e-4	6.57539e-5	0.0148796	0.00670317
chr22	21431309	21431409	7481312	0	+	0.47	(0.44,0.476]	chr22	763209	102	INTRON	INTRON	HIC2	ENSG00000169635.10	ENST00000407464.7:ENST00000407598.2	protein_coding	protein_coding	protein_coding	protein_coding	13	197	2	2.28217	2.725755	3.16934	3.27518e-4	4.05843e-5	0.0160995	0.00539487
chr12	110303725	110303825	5226327	0	+	0.48	(0.476,0.515]	chr12	495250	66	INTRON	INTRON	ATP2A2	ENSG00000174437.18	ENST00000308664.10:ENST00000539276.7:ENST00000377685.9:ENST00000548169.2:ENST00000550248.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	85	2	2.45107	2.7257100000000003	3.00035	0.00301722	0.00109036	0.0507519	0.0303873
chr1	211823063	211823162	631331	0	-	0.333333	(0.32,0.35]	chr1	74654	295	INTRON	INTRON	LPGAT1	ENSG00000123684.13	ENST00000366997.9:ENST00000366996.1	protein_coding	protein_coding	protein_coding	protein_coding	4	74	2	2.37199	2.72567	3.07935	0.00724137	0.00465833	0.0729826	0.0629753
chr15	28254239	28254339	6123363	0	-	0.39	(0.378,0.408]	chr15	583305	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	HERC2	ENSG00000128731.18	ENST00000261609.13	protein_coding	protein_coding	protein_coding	protein_coding	6	88	2	2.34855	2.725645	3.10274	0.00586642	0.00119031	0.0668095	0.0316639
chr16	207777	207877	6425967	0	-	0.51	(0.476,0.515]	chr16	617428	3	SS5_PROX	SS5_PROX:INTRON	LUC7L	ENSG00000007392.17	ENST00000337351.8:ENST00000426094.5:ENST00000397783.5:ENST00000629543.2:ENST00000490762.5:ENST00000293872.13:ENST00000464711.5:ENST00000419516.5:ENST00000397780.5:ENST00000495349.5:ENST00000418978.5:ENST00000430864.5:ENST00000443357.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	53	2	2.31726	2.725575	3.13389	0.015077	0.00405473	0.0994339	0.0578376
chr16	85471701	85471801	6414547	0	+	0.45	(0.44,0.476]	chr16	615465	1124	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	7	93	2	1.85695	2.72556	3.59417	0.0088884	5.78231e-4	0.0797916	0.0218253
chr12	22662603	22662703	5095126	0	+	0.56	(0.515,0.57]	chr12	481256	10	INTRON	INTRON	ETNK1	ENSG00000139163.16	ENST00000671733.1:ENST00000266517.9:ENST00000538218.2:ENST00000673406.1:ENST00000673188.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	47	2	1.8707	2.725525	3.58035	0.0523213	5.21239e-4	0.160182	0.0204523
chr7	128549325	128549425	3407537	0	+	0.54	(0.515,0.57]	chr7	318333	152	INTRON	INTRON	ENSG00000280828	ENSG00000280828.1	ENST00000479267.2	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	3	47	2	1.8707	2.725525	3.58035	0.0523213	5.21239e-4	0.160182	0.0204523
chr17	42810401	42810490	6774311	0	-	0.303371	(0.28,0.32]	chr17	667452	4	UTR3	UTR3:EXON_MRNA	BECN1	ENSG00000126581.13	ENST00000590099.6:ENST00000617806.4:ENST00000361523.8:ENST00000590764.1:ENST00000438274.7:ENST00000588276.5:ENST00000543382.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	67	2	2.28998	2.725495	3.16101	0.0166401	0.0061861	0.110511	0.0677395
chr1	220019579	220019656	638914	0	-	0.350649	(0.35,0.378]	chr1	75279	1	SS5_PROX	SS5_PROX:INTRON	EPRS1	ENSG00000136628.18	ENST00000366923.8:ENST00000609181.5:ENST00000477030.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	81	2	2.36666	2.725485	3.08431	0.0065853	0.00212276	0.0701901	0.0426185
chr10	89703703	89703802	4484572	0	+	0.424242	(0.408,0.44]	chr10	412695	16	INTRON	INTRON	KIF20B	ENSG00000138182.15	ENST00000371728.8:ENST00000260753.8:ENST00000447580.1	protein_coding	protein_coding	protein_coding	protein_coding	3	55	2	2.07919	2.7254050000000003	3.37162	0.0291499	0.00208674	0.14147	0.0411801
chr3	38368084	38368184	1399695	0	+	0.44	(0.408,0.44]	chr3	146814	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	XYLB	ENSG00000093217.11	ENST00000207870.8:ENST00000650590.1:ENST00000424034.5:ENST00000649234.1:ENST00000487569.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	55	2	2.07919	2.7254050000000003	3.37162	0.0291499	0.00208674	0.14147	0.0411801
chr3	31589738	31589837	1391968	0	+	0.323232	(0.32,0.35]	chr3	145698	93	INTRON	INTRON	STT3B	ENSG00000163527.10	ENST00000453168.5:ENST00000295770.4:ENST00000423527.5:ENST00000462235.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	62	2	1.99307	2.725395	3.45772	0.04271	0.00128487	0.148082	0.0333518
chr9	137671445	137671543	4224005	0	+	0.357143	(0.35,0.378]	chr9	388187	36	INTRON	INTRON	EHMT1	ENSG00000181090.21	ENST00000462484.5:ENST00000371394.6:ENST00000630754.2:ENST00000460843.6:ENST00000626216.2:ENST00000629335.2:ENST00000637335.1:ENST00000636376.1:ENST00000637655.1:ENST00000636027.1:ENST00000492232.5:ENST00000460486.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	93	2	2.56634	2.725395	2.88445	0.00212567	0.00190773	0.041756	0.0403772
chr3	141542204	141542303	1525200	0	+	0.353535	(0.35,0.378]	chr3	158846	12	INTRON	INTRON	RASA2	ENSG00000155903.14	ENST00000286364.9	protein_coding	protein_coding	protein_coding	protein_coding	2	43	2	2.39939	2.7253749999999997	3.05136	0.0458078	0.00578894	0.149888	0.0684334
chr11	14516163	14516261	4918460	0	-	0.489796	(0.476,0.515]	chr11	461005	13	INTRON	INTRON	PSMA1	ENSG00000129084.18	ENST00000396394.7:ENST00000530457.5:ENST00000528307.5:ENST00000418988.2:ENST00000533331.5:ENST00000529524.1:ENST00000531156.5:ENST00000526443.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	133	2	2.53025	2.72528	2.92031	0.0011567	1.04903e-4	0.0310955	0.00863456
chr21	43919117	43919217	7414332	0	+	0.39	(0.378,0.408]	chr21	755702	23	INTRON	INTRON	AGPAT3	ENSG00000160216.21	ENST00000291572.13:ENST00000448287.5:ENST00000398061.5:ENST00000327505.6:ENST00000445582.5	protein_coding	protein_coding	protein_coding	protein_coding	2	42	2	2.54849	2.7250550000000002	2.90162	0.0273196	0.0113157	0.136494	0.0886121
chr6	35906073	35906173	3088676	0	-	0.34	(0.32,0.35]	chr6	288898	7	INTRON	INTRON	SRPK1	ENSG00000096063.16	ENST00000373825.7:ENST00000423325.6:ENST00000346162.10:ENST00000361690.7:ENST00000510290.5:ENST00000508473.5:ENST00000512445.5:ENST00000513367.1:ENST00000507909.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	83	2	2.66302	2.72504	2.78706	0.00542632	0.00253645	0.0645052	0.0465056
chr9	120464708	120464807	4332709	0	-	0.373737	(0.35,0.378]	chr9	398037	36	INTRON	INTRON	CDK5RAP2	ENSG00000136861.19	ENST00000349780.9:ENST00000360190.8:ENST00000687279.1:ENST00000687633.1:ENST00000684780.1:ENST00000687311.1:ENST00000479584.2:ENST00000690814.1:ENST00000686842.1:ENST00000693714.1:ENST00000693386.1:ENST00000692746.1:ENST00000686376.1:ENST00000692155.1:ENST00000690646.1:ENST00000693433.1:ENST00000688923.1:ENST00000473282.6:ENST00000480112.5:ENST00000685866.1:ENST00000689688.1:ENST00000416449.6:ENST00000691504.1:ENST00000360822.8:ENST00000693728.1:ENST00000483412.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	43	2	2.72497	2.7249749999999997	2.72498	0.0198266	0.0168499	0.11068	0.109608
chr3	185751104	185751204	1885609	0	-	0.55	(0.515,0.57]	chr3	188573	524	INTRON	INTRON	IGF2BP2	ENSG00000073792.16	ENST00000382199.7:ENST00000346192.7:ENST00000457616.6:ENST00000421047.3:ENST00000461957.5:ENST00000493302.5:ENST00000466476.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	55	2	1.97035	2.72497	3.47959	0.0195832	8.38022e-4	0.109483	0.0263691
chr12	112085200	112085299	5415187	0	-	0.545455	(0.515,0.57]	chr12	517230	37	INTRON	INTRON	NAA25	ENSG00000111300.10	ENST00000261745.9:ENST00000552527.5:ENST00000549711.5:ENST00000551858.1:ENST00000547133.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	73	2	2.40178	2.7248799999999997	3.04798	0.00382306	5.9198e-4	0.0542786	0.0221485
chr5	181256701	181256799	2563434	0	+	0.387755	(0.378,0.408]	chr5	245313	11	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	CTC-338M12.4	ENSG00000233937.8	ENST00000506340.3:ENST00000505151.6:ENST00000511331.5:ENST00000417281.2:ENST00000599439.2	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	6	103	2	2.32825	2.724875	3.1215	0.00317471	4.84777e-4	0.0503542	0.0199443
chr6	149544154	149544253	3245552	0	-	0.363636	(0.35,0.378]	chr6	301538	22	INTRON	INTRON	PPIL4	ENSG00000131013.4	ENST00000253329.3	protein_coding	protein_coding	protein_coding	protein_coding	4	70	2	1.99351	2.72486	3.45621	0.020841	0.0011842	0.111648	0.031662
chr19	46781585	46781684	7195350	0	-	0.40404	(0.378,0.408]	chr19	728984	23	INTRON	INTRON	SLC1A5	ENSG00000105281.12	ENST00000542575.6:ENST00000594991.5:ENST00000434726.6:ENST00000412532.6:ENST00000593713.1	protein_coding	protein_coding	protein_coding	protein_coding	5	76	2	2.256	2.72484	3.19368	0.00426861	0.00336115	0.0573912	0.0532154
chr1	35834956	35835050	70263	0	+	0.425532	(0.408,0.44]	chr1	8988	4	INTRON	INTRON	AGO4	ENSG00000134698.11	ENST00000373210.4	protein_coding	protein_coding	protein_coding	protein_coding	4	65	2	1.69172	2.724635	3.75755	0.0486032	2.62433e-4	0.153946	0.0143317
chr10	42786568	42786667	4428059	0	+	0.414141	(0.408,0.44]	chr10	408077	5	INTRON	INTRON	BMS1	ENSG00000165733.8	ENST00000374518.6	protein_coding	protein_coding	protein_coding	protein_coding	3	54	2	2.36185	2.724615	3.08738	0.0133164	0.00478231	0.094512	0.0636201
chr12	50590294	50590394	5138003	0	+	0.43	(0.408,0.44]	chr12	484468	847	INTRON	INTRON	DIP2B	ENSG00000066084.13	ENST00000301180.10:ENST00000549620.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	54	2	2.36185	2.724615	3.08738	0.0133164	0.00478231	0.094512	0.0636201
chr1	100288202	100288302	172496	0	+	0.33	(0.32,0.35]	chr1	18774	6	INTRON	INTRON	RTCA	ENSG00000137996.13	ENST00000370128.9:ENST00000260563.4	protein_coding	protein_coding	protein_coding	protein_coding	4	75	2	2.50411	2.724605	2.9451	0.011051	0.00267989	0.0873897	0.0478767
chr6	47517222	47517322	2873960	0	+	0.41	(0.408,0.44]	chr6	272731	134	INTRON	INTRON	CD2AP	ENSG00000198087.7	ENST00000359314.5	protein_coding	protein_coding	protein_coding	protein_coding	12	188	2	2.13368	2.7245600000000003	3.31544	0.00149787	8.358e-6	0.0351546	0.00208551
chr21	38108823	38108923	7463974	0	-	0.44	(0.408,0.44]	chr21	760303	91	INTRON	INTRON	DSCR4	ENSG00000184029.9	ENST00000398948.5:ENST00000328264.7:ENST00000482032.1	lncRNA	lncRNA	lncRNA	lncRNA	5	86	2	2.19524	2.724535	3.2538299999999998	0.00990486	2.37059e-4	0.0838372	0.0136195
chr16	16016095	16016195	6308426	0	+	0.41	(0.408,0.44]	chr16	603529	2	SS3_PROX	SS3_PROX:INTRON	ABCC1	ENSG00000103222.20	ENST00000574224.2:ENST00000678422.1:ENST00000677164.1:ENST00000399408.7:ENST00000572882.3:ENST00000399410.8:ENST00000679043.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	83	2	2.20396	2.7245299999999997	3.2451	0.00337792	0.00235889	0.0516884	0.0445848
chr15	84768905	84769005	6088524	0	+	0.41	(0.408,0.44]	chr15	579441	37	INTRON	INTRON	ZNF592	ENSG00000166716.10	ENST00000560079.7	protein_coding	protein_coding	protein_coding	protein_coding	3	53	2	2.55103	2.72449	2.89795	0.0110735	0.00587353	0.0873897	0.0690758
chr10	35519903	35520002	4426347	0	+	0.444444	(0.44,0.476]	chr10	407937	29	INTRON	INTRON	CCNY	ENSG00000108100.18	ENST00000374706.5:ENST00000493157.6:ENST00000374704.8:ENST00000265375.13:ENST00000339497.7:ENST00000492478.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	53	2	2.13779	2.7244450000000002	3.3111	0.0264596	0.0020006	0.122506	0.0412555
chr2	8943364	8943464	1062963	0	-	0.46	(0.44,0.476]	chr2	113374	1	SS3_PROX	SS3_PROX:INTRON	MBOAT2	ENSG00000143797.12	ENST00000305997.8:ENST00000486484.5:ENST00000477073.5:ENST00000474341.5:ENST00000462696.1:ENST00000460786.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	53	2	2.13779	2.7244450000000002	3.3111	0.0264596	0.0020006	0.122506	0.0412555
chr2	58166969	58167069	1125991	0	-	0.46	(0.44,0.476]	chr2	120896	12	EXON_MRNA	EXON_MRNA:INTRON	FANCL	ENSG00000115392.13	ENST00000696400.1:ENST00000403295.8:ENST00000696492.1:ENST00000427708.7:ENST00000696314.1:ENST00000696315.1:ENST00000696454.1:ENST00000696508.1:ENST00000696548.1:ENST00000696542.1:ENST00000696432.1:ENST00000696319.1:ENST00000403676.6:ENST00000696433.1:ENST00000696434.1:ENST00000696499.1:ENST00000696564.1:ENST00000402135.8:ENST00000696546.1:ENST00000233741.9:ENST00000696316.1:ENST00000696378.1:ENST00000696435.1:ENST00000696493.1:ENST00000696543.1:ENST00000696544.1:ENST00000696545.1:ENST00000696565.1:ENST00000696620.1:ENST00000696621.1:ENST00000696635.1:ENST00000696364.1:ENST00000696634.1:ENST00000696619.1:ENST00000696317.1:ENST00000696622.1:ENST00000696467.1:ENST00000696547.1:ENST00000449070.6:ENST00000696305.1:ENST00000417361.2:ENST00000696338.1:ENST00000696361.1:ENST00000696318.1:ENST00000696371.1:ENST00000696409.1:ENST00000696410.1:ENST00000696455.1:ENST00000696468.1:ENST00000696527.1:ENST00000696567.1:ENST00000696324.1:ENST00000696566.1:ENST00000696623.1:ENST00000446381.6:ENST00000696469.1:ENST00000696624.1:ENST00000696411.1:ENST00000696475.1:ENST00000696636.1:ENST00000470506.2:ENST00000696358.1:ENST00000696373.1:ENST00000696394.1:ENST00000696320.1:ENST00000696339.1:ENST00000696395.1:ENST00000696341.1:ENST00000696340.1:ENST00000696374.1:ENST00000696396.1:ENST00000696412.1:ENST00000696375.1:ENST00000696342.1:ENST00000696325.1:ENST00000696399.1:ENST00000696398.1:ENST00000696306.1:ENST00000696397.1:ENST00000696360.1:ENST00000696344.1:ENST00000696343.1:ENST00000696637.1:ENST00000696362.1:ENST00000696528.1:ENST00000696497.1:ENST00000696326.1:ENST00000696638.1:ENST00000696625.1:ENST00000696376.1:ENST00000696510.1:ENST00000696438.1:ENST00000696496.1:ENST00000696509.1:ENST00000696569.1:ENST00000696457.1:ENST00000696458.1:ENST00000696473.1:ENST00000696495.1:ENST00000696415.1:ENST00000696472.1:ENST00000696494.1:ENST00000696363.1:ENST00000696414.1:ENST00000696529.1:ENST00000696471.1:ENST00000696439.1:ENST00000696459.1:ENST00000696498.1:ENST00000696532.1:ENST00000696416.1:ENST00000696530.1:ENST00000696460.1:ENST00000696570.1:ENST00000696531.1:ENST00000696440.1:ENST00000696307.1:ENST00000696401.1:ENST00000696345.1:ENST00000696377.1:ENST00000696417.1:ENST00000696594.1:ENST00000696595.1:ENST00000696379.1:ENST00000696346.1:ENST00000696380.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	53	2	2.13779	2.7244450000000002	3.3111	0.0264596	0.0020006	0.122506	0.0412555
chr6	12031756	12031855	2814421	0	+	0.474747	(0.44,0.476]	chr6	264794	110	INTRON	INTRON	HIVEP1	ENSG00000095951.17	ENST00000491710.5:ENST00000487103.5:ENST00000379388.7:ENST00000627968.2:ENST00000541134.5:ENST00000442081.6:ENST00000478545.1:ENST00000484210.1	protein_coding	protein_coding	protein_coding	protein_coding	3	53	2	2.13779	2.7244450000000002	3.3111	0.0264596	0.0020006	0.122506	0.0412555
chr7	100021730	100021829	3363152	0	+	0.444444	(0.44,0.476]	chr7	314220	20	INTRON	INTRON	ZKSCAN1	ENSG00000106261.17	ENST00000535170.5:ENST00000324306.11:ENST00000426572.5:ENST00000482979.5:ENST00000432317.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	53	2	2.27304	2.72438	3.17572	0.0158915	0.00427037	0.109464	0.0573912
chrX	114052733	114052832	7868569	0	-	0.464646	(0.44,0.476]	chrX	801557	99	INTRON	INTRON	XACT	ENSG00000241743.4	ENST00000468762.3:ENST00000649506.1	lncRNA	lncRNA	lncRNA	lncRNA	3	53	2	2.27304	2.72438	3.17572	0.0158915	0.00427037	0.109464	0.0573912
chr8	102378608	102378707	4012415	0	-	0.373737	(0.35,0.378]	chr8	367237	166	INTRON	INTRON	UBR5	ENSG00000104517.13	ENST00000520539.6:ENST00000220959.8:ENST00000521922.5	protein_coding	protein_coding	protein_coding	protein_coding	7	133	2	2.32472	2.724375	3.12403	0.0066582	3.52567e-5	0.0703994	0.00474674
chr7	148871367	148871466	3670634	0	-	0.292929	(0.28,0.32]	chr7	340632	1	INTRON	INTRON	EZH2	ENSG00000106462.12	ENST00000683292.1:ENST00000320356.7:ENST00000492143.5:ENST00000478654.5:ENST00000350995.6:ENST00000460911.5:ENST00000683744.1:ENST00000682317.1:ENST00000682263.1:ENST00000476773.5:ENST00000483967.5:ENST00000498186.5:ENST00000483012.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	164	2	2.28359	2.7243449999999996	3.1651	9.2935e-4	8.79973e-4	0.0278746	0.0272129
chr15	93003516	93003616	6104781	0	+	0.41	(0.408,0.44]	chr15	581618	8	INTRON	INTRON	CHD2	ENSG00000173575.22	ENST00000626874.2:ENST00000394196.9:ENST00000625662.2:ENST00000629104.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	53	2	2.39162	2.724335	3.05705	0.0105837	0.00658331	0.0911864	0.0701901
chr1	28741263	28741354	58389	0	+	0.494505	(0.476,0.515]	chr1	7597	5	INTRON	INTRON	YTHDF2	ENSG00000198492.16	ENST00000542507.5:ENST00000474884.5:ENST00000373812.8:ENST00000541996.5:ENST00000478283.5:ENST00000496288.5:ENST00000476976.1:ENST00000475796.5:ENST00000468863.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	172	2	1.88424	2.724295	3.56435	0.00370373	6.28269e-6	0.0535094	0.00175994
chr16	29435112	29435212	6469870	0	-	0.38	(0.378,0.408]	chr16	625005	2	SS5_PROX	SS5_PROX:INTRON	SMG1P6	ENSG00000254634.4	ENST00000532337.1	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	3	56	2	2.39444	2.724185	3.05393	0.0122858	0.00551532	0.091087	0.0672816
chr1	151619351	151619450	225793	0	+	0.434343	(0.408,0.44]	chr1	25862	45	INTRON	INTRON	SNX27	ENSG00000143376.14	ENST00000642376.1:ENST00000368843.8:ENST00000458013.7:ENST00000368841.7:ENST00000642479.1:ENST00000642349.1:ENST00000643179.1:ENST00000643814.1:ENST00000642582.1:ENST00000644970.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	40	2	2.36073	2.724055	3.08738	0.0481658	0.00478231	0.153019	0.0636201
chr3	185805560	185805660	1886154	0	-	0.3	(0.28,0.32]	chr3	188573	1069	INTRON	INTRON	IGF2BP2	ENSG00000073792.16	ENST00000382199.7:ENST00000346192.7:ENST00000457616.6:ENST00000421047.3:ENST00000461957.5:ENST00000493302.5:ENST00000466476.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	124	2	2.47916	2.72403	2.9689	0.00194987	0.0015115	0.0400465	0.0360297
chr1	86921796	86921896	153664	0	+	0.32	(0.28,0.32]	chr1	16952	56	INTRON	INTRON	HS2ST1	ENSG00000153936.18	ENST00000370550.10:ENST00000370551.8:ENST00000687893.1:ENST00000693745.1:ENST00000689904.1:ENST00000690674.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	80	2	2.14534	2.723985	3.30263	0.0117054	0.0038504	0.0962115	0.0542786
chr6	170572610	170572697	3037572	0	+	0.241379	[0,0.28]	chr6	283159	5	UTR3	UTR3:EXON_MRNA	TBP	ENSG00000112592.15	ENST00000540980.5:ENST00000392092.7:ENST00000230354.10:ENST00000636632.1:ENST00000446829.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	93	2	2.00184	2.7239750000000003	3.44611	0.0255167	0.00185186	0.120269	0.039946
chr2	235689917	235690017	1043297	0	+	0.3	(0.28,0.32]	chr2	111228	185	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1:ENST00000402604.6:ENST00000409538.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	68	2	1.86684	2.72392	3.581	0.0605813	8.63544e-4	0.171122	0.0266494
chr4	126660076	126660176	2237310	0	-	0.23	[0,0.28]	chr4	219023	1946	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	10	246	2	2.34354	2.72383	3.10412	0.00328588	4.17954e-5	0.0510063	0.00523975
chr10	74111213	74111310	4455657	0	+	0.443299	(0.44,0.476]	chr10	411497	17	INTRON	INTRON	VCL	ENSG00000035403.18	ENST00000623461.3:ENST00000372755.7:ENST00000624354.3:ENST00000211998.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	72	2	2.29126	2.7238249999999997	3.15639	0.0165638	3.93757e-4	0.102621	0.0178567
chr20	47343355	47343455	7349378	0	-	0.38	(0.378,0.408]	chr20	749346	244	INTRON	INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000435836.5:ENST00000446894.5:ENST00000441977.1	protein_coding	protein_coding	protein_coding	protein_coding	3	55	2	2.65815	2.723805	2.78946	0.0158859	0.00391167	0.101453	0.0569957
chrX	71422716	71422816	7678814	0	+	0.36	(0.35,0.378]	chrX	786281	2	SS3_PROX	SS3_PROX:INTRON	TAF1	ENSG00000147133.17	ENST00000683202.1:ENST00000373790.9:ENST00000423759.6:ENST00000683782.1:ENST00000683668.1:ENST00000276072.9:ENST00000373775.8:ENST00000485087.6:ENST00000437147.8:ENST00000683358.1:ENST00000682124.1:ENST00000461764.6:ENST00000492404.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	79	2	2.15229	2.723795	3.2953	0.00545124	0.0031465	0.0669407	0.0500431
chr17	43000402	43000502	6613169	0	+	0.39	(0.378,0.408]	chr17	644685	3	SS5_PROX	SS5_PROX:INTRON	RPL27	ENSG00000131469.15	ENST00000589037.5:ENST00000253788.12:ENST00000593262.1:ENST00000588830.1:ENST00000589913.6:ENST00000590864.2:ENST00000586277.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	51	2	1.48285	2.72378	3.96471	0.044825	0.032421	0.149888	0.145026
chr7	884014	884108	3269184	0	+	0.553191	(0.515,0.57]	chr7	303675	6	UTR5	UTR5:EXON_MRNA:INTRON	SUN1:GET4	ENSG00000164828.18:ENSG00000239857.7	ENST00000457861.1:ENST00000265857.8:ENST00000412734.6:ENST00000407192.5:ENST00000441491.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	64	2	2.02107	2.7237549999999997	3.42644	0.00910188	0.00106731	0.0809976	0.0300133
chr19	38656051	38656151	7065812	0	+	0.35	(0.32,0.35]	chr19	705486	74	INTRON	INTRON	ACTN4	ENSG00000130402.13	ENST00000252699.7:ENST00000588618.5:ENST00000440400.2:ENST00000424234.7:ENST00000589528.1:ENST00000390009.7:ENST00000495553.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	116	2	2.32879	2.72368	3.11857	0.00373122	5.76454e-4	0.0535844	0.0218153
chr5	146219902	146220002	2514278	0	+	0.5	(0.476,0.515]	chr5	240158	4	INTRON	INTRON	ENSG00000275740:RBM27	ENSG00000275740.1:ENSG00000091009.8	ENST00000506502.2:ENST00000265271.7	protein_coding	protein_coding	protein_coding	protein_coding	3	54	2	1.86492	2.723675	3.58243	0.0550347	6.18479e-4	0.165463	0.0223951
chr10	60787069	60787167	4435858	0	+	0.336735	(0.32,0.35]	chr10	409185	1	INTRON	INTRON	CDK1	ENSG00000170312.17	ENST00000519078.6:ENST00000316629.8:ENST00000395284.8:ENST00000448257.6:ENST00000373809.2	protein_coding	protein_coding	protein_coding	protein_coding	7	137	2	2.70922	2.7236450000000003	2.73807	0.00139315	4.28954e-4	0.0340865	0.0185474
chr7	132967818	132967918	3644741	0	-	0.37	(0.35,0.378]	chr7	338848	805	INTRON	INTRON	CHCHD3	ENSG00000106554.13	ENST00000262570.10:ENST00000448878.6:ENST00000496427.5:ENST00000423635.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	128	2	2.6264	2.72354	2.82068	0.00084924900000000005	5.94723e-4	0.0267232	0.0221865
chr11	96293588	96293688	5023872	0	-	0.44	(0.408,0.44]	chr11	473809	1997	INTRON	INTRON	MAML2	ENSG00000184384.14	ENST00000524717.6	protein_coding	protein_coding	protein_coding	protein_coding	5	73	2	1.8865	2.723535	3.56057	0.0148842	9.67143e-4	0.107116	0.0282401
chr1	21168806	21168895	393550	0	-	0.269663	[0,0.28]	chr1	46842	4	INTRON	INTRON	EIF4G3	ENSG00000075151.24	ENST00000374935.7:ENST00000602326.6:ENST00000685872.1:ENST00000686579.1:ENST00000688741.1:ENST00000400422.6:ENST00000634879.2:ENST00000693470.1:ENST00000685814.1:ENST00000356916.7:ENST00000438975.5:ENST00000411888.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	56	2	2.64309	2.723525	2.80396	0.0308646	0.0161429	0.13151	0.109464
chr1	35344940	35345040	69052	0	+	0.44	(0.408,0.44]	chr1	8729	192	INTRON	INTRON	ZMYM4	ENSG00000146463.12	ENST00000314607.11:ENST00000441447.1	protein_coding	protein_coding	protein_coding	protein_coding	2	40	2	2.66579	2.723505	2.78122	0.019342	0.015812	0.119831	0.101453
chr14	23064562	23064636	5842659	0	-	0.418919	(0.408,0.44]	chr14	555589	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	ACIN1	ENSG00000100813.15	ENST00000605057.6:ENST00000557515.5:ENST00000262710.5:ENST00000457657.5:ENST00000357481.6:ENST00000338631.10:ENST00000473758.5:ENST00000397341.7:ENST00000555053.5:ENST00000555478.5:ENST00000554680.5:ENST00000556052.1:ENST00000555566.1:ENST00000557039.1:ENST00000555807.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	40	2	2.66579	2.723505	2.78122	0.019342	0.015812	0.119831	0.101453
chr15	57104666	57104766	6033978	0	+	0.44	(0.408,0.44]	chr15	574689	124	INTRON	INTRON	TCF12	ENSG00000140262.18	ENST00000438423.6:ENST00000267811.9:ENST00000333725.10:ENST00000560190.5:ENST00000559609.5:ENST00000557843.5:ENST00000557947.5:ENST00000561152.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	40	2	2.66579	2.723505	2.78122	0.019342	0.015812	0.119831	0.101453
chr9	109039047	109039140	4311780	0	-	0.430108	(0.408,0.44]	chr9	396312	11	EXON_MRNA	EXON_MRNA:INTRON	TMEM245	ENSG00000106771.13	ENST00000374586.8:ENST00000472207.5:ENST00000413712.6:ENST00000491854.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	40	2	2.66579	2.723505	2.78122	0.019342	0.015812	0.119831	0.101453
chr1	93873541	93873627	512386	0	-	0.581395	(0.57,1]	chr1	60187	3	SS3_PROX	SS3_PROX:INTRON	DNTTIP2	ENSG00000067334.14	ENST00000436063.7:ENST00000359208.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	40	2	2.12821	2.7234	3.31859	0.00521663	0.00137292	0.0633615	0.0340241
chr6	43518641	43518736	2871018	0	+	0.442105	(0.44,0.476]	chr6	272197	9	INTRON	INTRON	POLR1C	ENSG00000171453.20	ENST00000428025.6:ENST00000646188.1:ENST00000481352.6:ENST00000512472.5:ENST00000372344.6:ENST00000607635.2:ENST00000646433.1:ENST00000646700.1:ENST00000304004.7:ENST00000643799.1:ENST00000642195.1:ENST00000645141.1:ENST00000488601.6:ENST00000643341.1:ENST00000423780.1:ENST00000455605.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	82	2	1.72944	2.723355	3.71727	0.0196145	3.2089e-4	0.109486	0.0159645
chr17	66308325	66308424	6662354	0	+	0.393939	(0.378,0.408]	chr17	650320	18	INTRON	INTRON	PRKCA	ENSG00000154229.12	ENST00000413366.8:ENST00000578063.5:ENST00000583361.1:ENST00000284384.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	75	2	2.04798	2.72335	3.39872	0.00809949	0.0019852	0.0808864	0.0404516
chr8	27515462	27515547	3721429	0	+	0.376471	(0.35,0.378]	chr8	345848	1	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	EPHX2	ENSG00000120915.14	ENST00000517536.5:ENST00000520623.5:ENST00000521400.6:ENST00000521780.5:ENST00000380476.7:ENST00000518379.5:ENST00000521684.1:ENST00000523326.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	98	2	2.32464	2.723325	3.12201	0.0159285	1.12452e-4	0.101453	0.00904963
chr7	87891920	87892018	3346834	0	+	0.316327	(0.28,0.32]	chr7	311868	35	INTRON	INTRON	DBF4	ENSG00000006634.8	ENST00000413643.5:ENST00000265728.6:ENST00000431138.5:ENST00000430279.5:ENST00000498144.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	67	2	2.05458	2.72331	3.39204	0.0381508	0.00188405	0.141764	0.0402736
chr13	25316249	25316343	5457323	0	+	0.308511	(0.28,0.32]	chr13	522911	4	INTRON	INTRON	NUP58	ENSG00000139496.17	ENST00000481980.2:ENST00000490231.6:ENST00000695571.1:ENST00000477876.2:ENST00000695572.1:ENST00000463407.6:ENST00000695573.1:ENST00000381736.8:ENST00000695583.1:ENST00000466694.6:ENST00000381718.8:ENST00000695575.1:ENST00000695574.1:ENST00000495460.2:ENST00000381747.7:ENST00000695576.1:ENST00000394327.2:ENST00000695577.1:ENST00000695584.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	128	2	1.61367	2.72325	3.83283	0.014518	5.10252e-4	0.105495	0.020816
chr19	36222078	36222177	7057494	0	+	0.484848	(0.476,0.515]	chr19	704664	35	INTRON	INTRON	ZNF146	ENSG00000167635.12	ENST00000456324.5:ENST00000591063.5:ENST00000443387.3:ENST00000586094.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	107	2	1.26354	2.7231	4.18266	0.0401772	4.55166e-5	0.161534	0.00583644
chr6	4813700	4813800	2791235	0	+	0.33	(0.32,0.35]	chr6	263598	365	INTRON	INTRON	CDYL	ENSG00000153046.18	ENST00000328908.9:ENST00000491864.1:ENST00000440139.5:ENST00000483019.1:ENST00000397588.8:ENST00000472453.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	167	2	2.13923	2.722795	3.30636	0.00346454	4.51477e-5	0.0519672	0.00546706
chr1	245930527	245930626	674933	0	-	0.424242	(0.408,0.44]	chr1	79698	7	EXON_MRNA	EXON_MRNA:INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000366517.5:ENST00000366516.5:ENST00000490107.6:ENST00000493441.5:ENST00000488153.5:ENST00000492487.5:ENST00000391836.3:ENST00000464398.1:ENST00000453676.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	41	2	2.49258	2.7227699999999997	2.95296	0.0314608	0.00929354	0.144381	0.0817766
chr12	104618386	104618486	5212302	0	+	0.43	(0.408,0.44]	chr12	493329	160	INTRON	INTRON	CHST11	ENSG00000171310.11	ENST00000303694.6:ENST00000549260.5:ENST00000549016.1	protein_coding	protein_coding	protein_coding	protein_coding	2	41	2	2.49258	2.7227699999999997	2.95296	0.0314608	0.00929354	0.144381	0.0817766
chr13	41058939	41059039	5577928	0	-	0.44	(0.408,0.44]	chr13	533206	398	INTRON	INTRON	ELF1	ENSG00000120690.16	ENST00000405737.2	protein_coding	protein_coding	protein_coding	protein_coding	2	41	2	2.49258	2.7227699999999997	2.95296	0.0314608	0.00929354	0.144381	0.0817766
chr2	197432071	197432171	1306994	0	-	0.42	(0.408,0.44]	chr2	136747	77	INTRON	INTRON	SF3B1	ENSG00000115524.17	ENST00000652026.1:ENST00000652738.1:ENST00000335508.11:ENST00000470268.2:ENST00000409915.8:ENST00000414963.2:ENST00000487698.5:ENST00000414174.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	41	2	2.49258	2.7227699999999997	2.95296	0.0314608	0.00929354	0.144381	0.0817766
chr3	93992889	93992989	1458220	0	+	0.44	(0.408,0.44]	chr3	153253	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	ARL13B	ENSG00000169379.17	ENST00000535334.5:ENST00000303097.11:ENST00000681247.1:ENST00000679739.1:ENST00000680414.1:ENST00000681380.1:ENST00000492165.3:ENST00000478400.3:ENST00000681013.1:ENST00000680994.1:ENST00000679654.1:ENST00000486562.2:ENST00000679601.1:ENST00000394222.8:ENST00000471138.5:ENST00000679404.1:ENST00000679872.1:ENST00000681655.1:ENST00000460371.5:ENST00000679657.1:ENST00000335438.7:ENST00000679666.1:ENST00000679607.1:ENST00000679587.1:ENST00000475206.3:ENST00000680430.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	41	2	2.49258	2.7227699999999997	2.95296	0.0314608	0.00929354	0.144381	0.0817766
chr11	2952001	2952097	4891574	0	-	0.541667	(0.515,0.57]	chr11	458280	3	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	NAP1L4	ENSG00000205531.13	ENST00000620138.4:ENST00000380542.9:ENST00000469805.5:ENST00000526115.5:ENST00000492594.6:ENST00000526023.5:ENST00000492685.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	73	2	2.4386	2.722765	3.00693	0.00326739	7.26845e-4	0.0508595	0.0245647
chr1	41176061	41176160	430164	0	-	0.353535	(0.35,0.378]	chr1	52248	132	INTRON	INTRON	SCMH1	ENSG00000010803.17	ENST00000695335.1:ENST00000372596.5:ENST00000372597.5:ENST00000337495.9:ENST00000695336.1	protein_coding	protein_coding	protein_coding	protein_coding	3	58	2	1.98929	2.72275	3.45621	0.0417909	0.0011842	0.147075	0.031662
chr6	89648729	89648829	3160202	0	-	0.46	(0.44,0.476]	chr6	294372	4	SS3_PROX	SS3_PROX:INTRON	MDN1	ENSG00000112159.12	ENST00000369393.8:ENST00000629399.2	protein_coding	protein_coding	protein_coding	protein_coding	3	53	2	2.08277	2.72254	3.36231	0.0309998	0.00161678	0.13151	0.0369204
chr4	2539367	2539467	1912543	0	+	0.37	(0.35,0.378]	chr4	191976	18	INTRON	INTRON	RNF4:FAM193A	ENSG00000063978.16:ENSG00000125386.16	ENST00000508235.1:ENST00000637812.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	58	2	2.28125	2.72248	3.16371	0.0182271	0.00383956	0.107842	0.0562562
chr1	31932082	31932171	414374	0	-	0.325843	(0.32,0.35]	chr1	49930	6	INTRON	INTRON	PTP4A2	ENSG00000184007.22	ENST00000647444.2:ENST00000649841.1:ENST00000468531.1:ENST00000534796.5:ENST00000532289.1:ENST00000526960.1:ENST00000524384.5:ENST00000528840.1:ENST00000494444.2:ENST00000529477.5:ENST00000533408.1:ENST00000475464.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	40	2	1.49965	2.72247	3.94529	0.0693433	0.0542985	0.184298	0.182243
chr9	92254919	92255017	4286935	0	-	0.581633	(0.57,1]	chr9	394155	16	EXON_MRNA	EXON_MRNA:INTRON	IARS1	ENSG00000196305.19	ENST00000375643.7:ENST00000443024.7:ENST00000447699.7:ENST00000683537.1:ENST00000684726.1:ENST00000683192.1:ENST00000683565.1:ENST00000682756.1:ENST00000684542.1:ENST00000683793.1:ENST00000683817.1:ENST00000682141.1:ENST00000682893.1:ENST00000684557.1:ENST00000498025.2:ENST00000682156.1:ENST00000627121.3:ENST00000683469.1:ENST00000683495.1:ENST00000682578.1:ENST00000682533.1:ENST00000472894.2:ENST00000684757.1:ENST00000684445.1:ENST00000683376.1:ENST00000683679.1:ENST00000683119.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	63	2	1.33144	2.72245	4.11346	0.0226505	1.70324e-5	0.124921	0.00330681
chr16	23874611	23874711	6324146	0	+	0.35	(0.32,0.35]	chr16	605697	54	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000645517.1:ENST00000498739.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	110	2	1.64168	2.7224399999999997	3.8032	0.014976	4.69031e-4	0.107704	0.0200452
chr16	1680237	1680336	6275222	0	+	0.464646	(0.44,0.476]	chr16	599497	15	INTRON	INTRON	JPT2	ENSG00000206053.13	ENST00000569256.5:ENST00000567717.1:ENST00000562684.5:ENST00000248098.8:ENST00000561516.5:ENST00000382711.9:ENST00000566742.5:ENST00000569765.5:ENST00000566925.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	53	2	2.24189	2.722395	3.2029	0.0193405	0.00308681	0.108861	0.0510391
chr5	150739314	150739414	2751701	0	-	0.39	(0.378,0.408]	chr5	259259	26	INTRON	INTRON	DCTN4	ENSG00000132912.13	ENST00000447998.7:ENST00000424236.5:ENST00000446090.6:ENST00000627368.2:ENST00000521728.5:ENST00000519313.5:ENST00000518015.5:ENST00000521448.5:ENST00000521533.1:ENST00000521093.1:ENST00000517421.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	75	2	2.0848	2.72239	3.35998	0.00697927	0.00230615	0.0754576	0.0428247
chr10	22699437	22699537	4580353	0	-	0.53	(0.515,0.57]	chr10	422046	49	INTRON	INTRON	PIP4K2A	ENSG00000150867.14	ENST00000376573.9:ENST00000545335.5	protein_coding	protein_coding	protein_coding	protein_coding	3	48	2	1.94945	2.7222049999999998	3.49496	0.0414068	9.61701e-4	0.161557	0.0282401
chr11	31493022	31493121	4939075	0	-	0.343434	(0.32,0.35]	chr11	462601	44	INTRON	INTRON	IMMP1L	ENSG00000148950.11	ENST00000532287.6:ENST00000534812.5:ENST00000526776.5:ENST00000278200.5:ENST00000648582.1:ENST00000533642.1:ENST00000527184.5:ENST00000528161.5:ENST00000532624.5:ENST00000529749.5:ENST00000530023.5:ENST00000531693.1:ENST00000532668.1:ENST00000533921.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	85	2	2.24224	2.7222	3.20216	0.00480708	0.00393422	0.0602209	0.0572563
chr17	81568430	81568515	6848899	0	-	0.341176	(0.32,0.35]	chr17	678144	4	SS3_PROX	SS3_PROX:INTRON	NPLOC4	ENSG00000182446.14	ENST00000331134.11:ENST00000573519.5:ENST00000571714.5:ENST00000572824.1:ENST00000573212.5:ENST00000576713.6:ENST00000374747.9:ENST00000574897.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	61	2	2.45306	2.722155	2.99125	0.00958447	0.00916394	0.0855292	0.0820838
chr4	78820651	78820751	1981828	0	+	0.48	(0.476,0.515]	chr4	198464	5	PRIMIRNA	PRIMIRNA:INTRON	BMP2K:ENSG00000266270	ENSG00000138756.19:ENSG00000266270.1	ENST00000389010.7:ENST00000502613.3:ENST00000502871.5:ENST00000583713.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:nonsense_mediated_decay:primary_miRNA	3	53	2	2.19809	2.7220250000000004	3.24596	0.020317	0.00322919	0.121522	0.0507087
chr10	96568998	96569097	4674250	0	-	0.474747	(0.44,0.476]	chr10	430721	32	INTRON	INTRON	TM9SF3	ENSG00000077147.16	ENST00000371142.9:ENST00000649367.1:ENST00000443638.1:ENST00000464654.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	40	2	2.29842	2.7220050000000002	3.14559	0.0552483	0.00384923	0.165463	0.0562562
chr1	110364584	110364684	182597	0	+	0.57	(0.515,0.57]	chr1	20257	82	INTRON	INTRON	LAMTOR5-AS1	ENSG00000224699.10	ENST00000626572.2	lncRNA	lncRNA	lncRNA	lncRNA	3	46	2	2.1885	2.721985	3.25547	0.0202537	0.00261721	0.121364	0.0455413
chr17	2609150	2609247	6547590	0	+	0.525773	(0.515,0.57]	chr17	635209	30	INTRON	INTRON	PAFAH1B1	ENSG00000007168.14	ENST00000576586.5:ENST00000397195.10:ENST00000676201.1:ENST00000575477.5:ENST00000675621.1:ENST00000676353.1:ENST00000674717.1:ENST00000675202.1:ENST00000675764.1:ENST00000674608.1:ENST00000676077.1:ENST00000676098.1:ENST00000572915.6:ENST00000570400.1:ENST00000571289.1:ENST00000675430.1:ENST00000675331.1:ENST00000676188.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	46	2	2.01737	2.721905	3.42644	0.0352218	0.00106731	0.137535	0.0300133
chr15	41287093	41287172	6004416	0	+	0.329114	(0.32,0.35]	chr15	571254	3	SS3_PROX	SS3_PROX:INTRON	OIP5-AS1	ENSG00000247556.6	ENST00000558945.5:ENST00000500949.6:ENST00000561275.5:ENST00000560706.5:ENST00000559368.5:ENST00000561226.5:ENST00000557993.5:ENST00000501665.2	lncRNA	lncRNA	lncRNA	lncRNA	14	266	2	2.25203	2.721645	3.19126	0.00117741	5.59142e-6	0.0313972	0.00164301
chr7	119752375	119752475	3628862	0	-	0.23	[0,0.28]	chr7	337322	2	SS3_PROX	SS3_PROX:INTRON	LINC02476	ENSG00000225546.6	ENST00000660268.1:ENST00000431071.5:ENST00000426413.2	lncRNA	lncRNA	lncRNA	lncRNA	8	197	2	2.45328	2.7215949999999998	2.98991	0.00336656	1.60632e-4	0.0516405	0.0109124
chr15	28592947	28593043	5987943	0	+	0.354167	(0.35,0.378]	chr15	569244	13	INTRON	INTRON	HERC2P9	ENSG00000206149.11	ENST00000689985.1:ENST00000688694.1:ENST00000691570.1:ENST00000529537.2:ENST00000529624.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	11	192	2	2.36109	2.7215249999999997	3.08196	4.68792e-4	9.15914e-5	0.0196287	0.00850875
chr7	148869803	148869903	3670618	0	-	0.47	(0.44,0.476]	chr7	340628	221	INTRON	INTRON	EZH2	ENSG00000106462.12	ENST00000683292.1:ENST00000320356.7:ENST00000492143.5:ENST00000478654.5:ENST00000350995.6:ENST00000460911.5:ENST00000683744.1:ENST00000682317.1:ENST00000682263.1:ENST00000684300.1:ENST00000476773.5:ENST00000483967.5:ENST00000498186.5:ENST00000483012.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	63	2	2.22103	2.721475	3.22192	0.00776319	0.00360821	0.0787356	0.0533855
chr11	86061960	86062060	5014772	0	-	0.33	(0.32,0.35]	chr11	473022	300	INTRON	INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000630913.2:ENST00000528398.5:ENST00000356360.9:ENST00000534412.5:ENST00000531558.1:ENST00000531930.5:ENST00000532041.5:ENST00000525162.5:ENST00000528256.1:ENST00000528411.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	17	305	2	2.65597	2.721445	2.78692	2.63918e-4	2.09126e-5	0.0149605	0.00353628
chr1	165829031	165829130	243763	0	+	0.525253	(0.515,0.57]	chr1	29139	7	INTRON	INTRON	UCK2	ENSG00000143179.16	ENST00000367879.9:ENST00000642653.1	protein_coding	protein_coding	protein_coding	protein_coding	5	65	2	2.12882	2.72135	3.31388	0.005888	0.00174704	0.0670089	0.0386026
chrX	44958583	44958683	7649456	0	+	0.37	(0.35,0.378]	chrX	782726	842	INTRON	INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000675440.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000621147.5:ENST00000475233.1:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	69	2	2.35838	2.721345	3.08431	0.0065853	0.00468156	0.0701901	0.0631419
chr10	79802891	79802988	4657447	0	-	0.391753	(0.378,0.408]	chr10	429021	5	INTRON	INTRON	NUTM2B-AS1	ENSG00000225484.7	ENST00000671459.1:ENST00000601369.6:ENST00000662025.1:ENST00000670682.1:ENST00000619625.4:ENST00000658528.1:ENST00000477192.6:ENST00000665716.1:ENST00000483080.6:ENST00000661316.1:ENST00000488805.5:ENST00000659471.1:ENST00000484794.6:ENST00000495430.2:ENST00000496359.6	lncRNA	lncRNA	lncRNA	lncRNA	2	41	2	2.38873	2.72133	3.05393	0.0458857	0.00551532	0.149888	0.0672816
chr19	35250759	35250859	7054523	0	+	0.46	(0.44,0.476]	chr19	703862	1	SS5_PROX	SS5_PROX:INTRON	LSR	ENSG00000105699.17	ENST00000597933.5:ENST00000602122.5:ENST00000621372.4:ENST00000361790.7:ENST00000360798.7:ENST00000354900.7:ENST00000347609.8:ENST00000605618.6:ENST00000427250.5:ENST00000602044.2:ENST00000601623.5:ENST00000599658.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	40	2	2.58033	2.72132	2.86231	0.0247511	0.012214	0.131869	0.0910127
chr5	154437724	154437823	2755990	0	-	0.454545	(0.44,0.476]	chr5	259913	10	INTRON	INTRON	SAP30L-AS1	ENSG00000245275.8	ENST00000658072.1:ENST00000519727.5:ENST00000652933.1:ENST00000524264.6:ENST00000652895.1:ENST00000501280.4	lncRNA	lncRNA	lncRNA	lncRNA	2	40	2	2.58033	2.72132	2.86231	0.0247511	0.012214	0.131869	0.0910127
chr1	40076429	40076529	428393	0	-	0.51	(0.476,0.515]	chr1	52072	3	SS5_PROX	SS5_PROX:INTRON	PPT1	ENSG00000131238.18	ENST00000641471.1:ENST00000642050.2:ENST00000530076.6:ENST00000641083.1:ENST00000641319.1:ENST00000530704.6:ENST00000433473.8:ENST00000439754.6:ENST00000449045.7:ENST00000641691.1:ENST00000641236.1:ENST00000529905.5:ENST00000641381.1:ENST00000372775.2:ENST00000641924.1:ENST00000527311.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	54	2	2.63168	2.7212199999999998	2.81076	0.0237106	0.00203568	0.118716	0.0417667
chr2	63968456	63968556	1139498	0	-	0.5	(0.476,0.515]	chr2	122016	1	SS5_PROX	SS5_PROX:INTRON	VPS54	ENSG00000143952.20	ENST00000409558.8:ENST00000272322.9:ENST00000354504.7	protein_coding	protein_coding	protein_coding	protein_coding	3	54	2	2.63168	2.7212199999999998	2.81076	0.0237106	0.00203568	0.118716	0.0417667
chr19	28527408	28527508	7166369	0	-	0.26	[0,0.28]	chr19	724189	592	INTRON	INTRON	ENSG00000283403:ENSG00000267243	ENSG00000283403.1:ENSG00000267243.6	ENST00000592347.5:ENST00000593065.5	lncRNA	lncRNA	lncRNA	lncRNA	7	127	2	1.81823	2.72117	3.62411	0.011743	0.00157815	0.0962115	0.0362091
chr11	86057168	86057268	5014724	0	-	0.31	(0.28,0.32]	chr11	473022	252	INTRON	INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000630913.2:ENST00000528398.5:ENST00000356360.9:ENST00000534412.5:ENST00000531558.1:ENST00000531930.5:ENST00000532041.5:ENST00000525162.5:ENST00000528256.1:ENST00000528411.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	12	222	2	2.31838	2.721145	3.12391	4.28519e-4	3.01343e-4	0.0185367	0.0160895
chr2	96634478	96634578	1181161	0	-	0.45	(0.44,0.476]	chr2	126525	3	SS3_PROX	SS3_PROX:INTRON	KANSL3	ENSG00000114982.19	ENST00000354204.10:ENST00000431828.6:ENST00000487070.5:ENST00000420155.5:ENST00000670907.1:ENST00000666923.1:ENST00000597150.5:ENST00000444759.5:ENST00000452268.5:ENST00000425656.5:ENST00000448075.1:ENST00000451819.5:ENST00000416138.1:ENST00000418735.1:ENST00000475820.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	10	165	2	2.67072	2.72112	2.77152	3.07975e-4	1.09809e-4	0.0161519	0.0088711
chr7	148879714	148879814	3670718	0	-	0.48	(0.476,0.515]	chr7	340632	85	INTRON	INTRON	EZH2	ENSG00000106462.12	ENST00000683292.1:ENST00000320356.7:ENST00000492143.5:ENST00000478654.5:ENST00000350995.6:ENST00000460911.5:ENST00000683744.1:ENST00000682317.1:ENST00000682263.1:ENST00000476773.5:ENST00000483967.5:ENST00000498186.5:ENST00000483012.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	129	2	2.22708	2.721005	3.21493	0.00263694	5.7577e-5	0.0458452	0.00620725
chr5	65933000	65933100	2370908	0	+	0.58	(0.57,1]	chr5	228472	58	INTRON	INTRON	ERBIN	ENSG00000112851.15	ENST00000380943.6:ENST00000507490.1:ENST00000416865.6:ENST00000380935.5:ENST00000284037.10:ENST00000380938.6:ENST00000511297.5:ENST00000506030.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	47	2	1.69018	2.720915	3.75165	0.0143258	1.54884e-4	0.104177	0.0113252
chr7	4684767	4684867	3269940	0	+	0.41	(0.408,0.44]	chr7	303884	15	INTRON	INTRON	FOXK1	ENSG00000164916.11	ENST00000328914.5	protein_coding	protein_coding	protein_coding	protein_coding	4	35	2	1.43792	2.720885	4.00385	0.062843	0.0454568	0.196433	0.149888
chr21	45083680	45083780	7417943	0	+	0.4	(0.378,0.408]	chr21	756262	85	INTRON	INTRON	ADARB1	ENSG00000197381.17	ENST00000462214.5:ENST00000460734.5:ENST00000348831.9:ENST00000389861.7:ENST00000389863.8:ENST00000492414.5:ENST00000496664.5:ENST00000437626.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	41	2	2.71183	2.72088	2.72993	0.0188736	0.0170789	0.110899	0.108861
chr4	94260331	94260430	1998047	0	+	0.393939	(0.378,0.408]	chr4	199451	63	INTRON	INTRON	SMARCAD1	ENSG00000163104.18	ENST00000359052.8:ENST00000457823.6:ENST00000354268.9:ENST00000510105.5:ENST00000394961.6:ENST00000509418.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	41	2	2.71183	2.72088	2.72993	0.0188736	0.0170789	0.110899	0.108861
chr6	34761503	34761602	2848264	0	+	0.393939	(0.378,0.408]	chr6	269088	32	INTRON	INTRON	SNRPC	ENSG00000124562.10	ENST00000244520.10:ENST00000374018.5:ENST00000374017.3:ENST00000474635.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	41	2	2.71183	2.72088	2.72993	0.0188736	0.0170789	0.110899	0.108861
chr6	99419124	99419223	3166086	0	-	0.313131	(0.28,0.32]	chr6	295334	23	INTRON	INTRON	PNISR	ENSG00000132424.17	ENST00000681615.1:ENST00000369239.10:ENST00000647811.1:ENST00000481229.2:ENST00000679525.1:ENST00000681611.1:ENST00000438806.5:ENST00000478777.5:ENST00000492294.5:ENST00000498075.1:ENST00000466057.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	12	151	2	1.54053	2.72088	3.90123	0.0125196	3.8229e-4	0.0977874	0.0181457
chr4	2005233	2005330	2096014	0	-	0.453608	(0.44,0.476]	chr4	207407	7	INTRON	INTRON	NELFA	ENSG00000185049.16	ENST00000542778.5:ENST00000382882.9:ENST00000333877.8:ENST00000431323.6:ENST00000455762.5:ENST00000421397.5:ENST00000411649.3:ENST00000443203.5:ENST00000458616.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	102	2	2.47804	2.7208550000000002	2.96367	0.00325838	2.39417e-4	0.0508595	0.0136403
chr5	131684061	131684160	2719604	0	-	0.323232	(0.32,0.35]	chr5	255672	45	INTRON	INTRON	FNIP1	ENSG00000217128.13	ENST00000510461.6:ENST00000307954.12:ENST00000307968.11:ENST00000511848.1	protein_coding	protein_coding	protein_coding	protein_coding	11	131	2	1.46786	2.720835	3.97381	0.017672	2.19875e-4	0.11319	0.0135522
chr7	119822057	119822157	3629561	0	-	0.35	(0.32,0.35]	chr7	337335	208	INTRON	INTRON	LINC02476	ENSG00000225546.6	ENST00000660268.1:ENST00000431071.5:ENST00000426413.2	lncRNA	lncRNA	lncRNA	lncRNA	4	74	2	2.02133	2.720795	3.42026	0.017146	0.00219805	0.111072	0.0417893
chr16	67030577	67030677	6365556	0	+	0.45	(0.44,0.476]	chr16	611408	4	SS5_PROX	SS5_PROX:INTRON	CBFB	ENSG00000067955.15	ENST00000651988.1:ENST00000652360.1:ENST00000561924.6:ENST00000290858.11:ENST00000412916.7:ENST00000564034.6:ENST00000650873.1:ENST00000563939.3:ENST00000565389.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	73	2	1.72421	2.72074	3.71727	0.0285163	3.2089e-4	0.12666	0.0159645
chr22	42985138	42985237	7598052	0	-	0.535354	(0.515,0.57]	chr22	778194	254	INTRON	INTRON	PACSIN2	ENSG00000100266.19	ENST00000263246.8:ENST00000453643.5:ENST00000422336.5:ENST00000445706.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	36	2	2.35125	2.7206349999999997	3.09002	0.0436431	0.00491099	0.162255	0.0609494
chr1	206394669	206394768	299783	0	+	0.434343	(0.408,0.44]	chr1	34392	6	INTRON	INTRON	SRGAP2	ENSG00000266028.8	ENST00000573034.8:ENST00000419187.6:ENST00000605610.5:ENST00000624873.3	protein_coding	protein_coding	protein_coding	protein_coding	3	53	2	2.60048	2.720625	2.84077	0.0132196	0.00484324	0.0940535	0.0640618
chr1	24746224	24746324	46069	0	+	0.5	(0.476,0.515]	chr1	5764	2	INTRON	INTRON	CLIC4	ENSG00000169504.15	ENST00000488683.1:ENST00000497755.1:ENST00000489758.1:ENST00000374379.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	54	2	2.06491	2.720615	3.37632	0.0304733	0.00195267	0.143385	0.0400465
chr1	26776156	26776256	52002	0	+	0.43	(0.408,0.44]	chr1	6646	2	SS5_PROX	SS5_PROX:INTRON	ARID1A	ENSG00000117713.21	ENST00000430799.7:ENST00000324856.13:ENST00000457599.6:ENST00000374152.7:ENST00000636219.1:ENST00000466382.2:ENST00000532781.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	103	2	2.42404	2.7205950000000003	3.01715	0.00413548	1.77739e-4	0.0566868	0.0116289
chr15	28318428	28318528	6124030	0	-	0.57	(0.515,0.57]	chr15	583407	186	INTRON	INTRON	HERC2	ENSG00000128731.18	ENST00000261609.13:ENST00000564734.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	34	2	2.60899	2.720435	2.83188	0.0232669	0.0108207	0.118148	0.0920575
chr7	151507139	151507238	3674798	0	-	0.40404	(0.378,0.408]	chr7	341207	86	INTRON	INTRON	RHEB	ENSG00000106615.10	ENST00000262187.10:ENST00000472642.5:ENST00000478470.5:ENST00000496004.5:ENST00000470370.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	75	2	2.12071	2.720435	3.32016	0.00601933	0.00268328	0.0700813	0.0464781
chrX	71381342	71381442	7678363	0	+	0.52	(0.515,0.57]	chrX	786165	2	SS3_PROX	SS3_PROX:INTRON	TAF1	ENSG00000147133.17	ENST00000683202.1:ENST00000373790.9:ENST00000423759.6:ENST00000683782.1:ENST00000683715.1:ENST00000683668.1:ENST00000276072.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	34	2	2.60899	2.720435	2.83188	0.0232669	0.0108207	0.118148	0.0920575
chr18	21742910	21743010	6879753	0	+	0.34	(0.32,0.35]	chr18	681868	7	INTRON	INTRON	MIB1	ENSG00000101752.13	ENST00000578646.5:ENST00000261537.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	102	2	1.8018	2.7203850000000003	3.63897	0.0103524	9.34231e-4	0.0896588	0.0280484
chr17	42296588	42296687	6611108	0	+	0.373737	(0.35,0.378]	chr17	643999	4	INTRON	INTRON	STAT5A	ENSG00000126561.18	ENST00000345506.8:ENST00000546010.6:ENST00000677893.1:ENST00000676631.1:ENST00000590726.7:ENST00000678903.1:ENST00000590949.6:ENST00000676585.1:ENST00000588868.5:ENST00000677301.1	protein_coding	protein_coding	protein_coding	protein_coding	4	70	2	1.92704	2.72026	3.51348	0.0228255	0.00136294	0.125469	0.0336321
chr21	14515903	14516000	7427897	0	-	0.360825	(0.35,0.378]	chr21	757750	30	INTRON	INTRON	SAMSN1	ENSG00000155307.19	ENST00000647101.1:ENST00000644288.1:ENST00000400564.5:ENST00000400566.6:ENST00000285670.7:ENST00000619120.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	198	2	2.09739	2.72025	3.34311	8.33047e-4	6.25674e-5	0.0263691	0.00701385
chr21	22222612	22222711	7384594	0	+	0.363636	(0.35,0.378]	chr21	752727	94	INTRON	INTRON	ENSG00000226043	ENSG00000226043.2	ENST00000667099.1:ENST00000654607.1:ENST00000444130.1	lncRNA	lncRNA	lncRNA	lncRNA	5	79	2	2.18494	2.720215	3.25549	0.0047516	0.00363602	0.0635784	0.0535085
chr16	18890269	18890362	6457742	0	-	0.376344	(0.35,0.378]	chr16	622861	3	INTRON	INTRON	SMG1	ENSG00000157106.18	ENST00000446231.7:ENST00000565324.5:ENST00000561947.5:ENST00000565224.5:ENST00000532700.6	protein_coding	protein_coding	protein_coding	protein_coding	3	59	2	1.81767	2.720195	3.62272	0.0640429	5.64719e-4	0.177882	0.021704
chr6	170736745	170736844	3038824	0	+	0.414141	(0.408,0.44]	chr6	283202	5	EXON_LNCRNA	EXON_LNCRNA	ENSG00000230423	ENSG00000230423.3	ENST00000426839.2	lncRNA	lncRNA	lncRNA	lncRNA	4	73	2	2.55103	2.7200800000000003	2.88913	0.00587353	0.00185044	0.0690758	0.0388609
chr17	30742508	30742605	6589912	0	+	0.268041	[0,0.28]	chr17	640854	24	INTRON	INTRON	SUZ12P1	ENSG00000264538.7	ENST00000578070.5:ENST00000579526.5:ENST00000690405.1:ENST00000497969.6:ENST00000578195.6:ENST00000582557.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	5	105	2	1.83992	2.720055	3.60019	0.0212029	0.00172089	0.123192	0.0374701
chr1	244844755	244844853	672887	0	-	0.377551	(0.35,0.378]	chr1	79586	43	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	HNRNPU	ENSG00000153187.20	ENST00000475997.6:ENST00000366527.4:ENST00000649899.1:ENST00000638230.1:ENST00000640657.1	protein_coding	retained_intron	protein_coding	retained_intron:nonsense_mediated_decay	21	367	2	2.61133	2.720025	2.82872	3.23977e-5	2.21091e-5	0.00479617	0.00367035
chr15	65786228	65786328	6209736	0	-	0.31	(0.28,0.32]	chr15	592617	190	INTRON	INTRON	DENND4A	ENSG00000174485.16	ENST00000443035.8:ENST00000431932.6:ENST00000564674.5:ENST00000568515.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	111	2	1.80728	2.72002	3.63276	0.0108259	0.00114475	0.0920575	0.0308149
chr7	156882371	156882471	3687910	0	-	0.46	(0.44,0.476]	chr7	342096	451	INTRON	INTRON	LMBR1	ENSG00000105983.23	ENST00000353442.10:ENST00000415428.5:ENST00000454132.5:ENST00000434503.5:ENST00000430278.5:ENST00000434278.5:ENST00000444719.5:ENST00000461469.5:ENST00000414218.1:ENST00000434453.1:ENST00000498034.5:ENST00000433968.5:ENST00000485985.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	117	2	2.50297	2.720005	2.93704	0.00135188	2.76819e-4	0.0336321	0.0148174
chr1	114770176	114770276	528656	0	-	0.46	(0.44,0.476]	chr1	62378	8	UTR3	UTR3:EXON_MRNA	SIKE1	ENSG00000052723.12	ENST00000060969.6:ENST00000369528.9	protein_coding	protein_coding	protein_coding	protein_coding	5	72	2	2.04674	2.7199799999999996	3.39322	0.00803423	0.00187283	0.0803474	0.0390476
chr3	36986232	36986331	1655291	0	-	0.333333	(0.32,0.35]	chr3	169856	13	UTR3	UTR3:EXON_MRNA	EPM2AIP1	ENSG00000178567.8	ENST00000322716.8	protein_coding	protein_coding	protein_coding	protein_coding	9	174	2	2.68077	2.71996	2.75915	8.1649e-4	1.57956e-4	0.0264074	0.0108016
chr11	68094536	68094635	4972327	0	-	0.292929	(0.28,0.32]	chr11	469432	48	INTRON	INTRON	CHKA	ENSG00000110721.12	ENST00000265689.9:ENST00000356135.9:ENST00000531341.1	protein_coding	protein_coding	protein_coding	protein_coding	7	111	2	1.6789	2.719955	3.76101	0.017572	6.8623e-4	0.11319	0.0240041
chr6	36600762	36600859	2854485	0	+	0.391753	(0.378,0.408]	chr6	269793	6	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SRSF3	ENSG00000112081.17	ENST00000373715.11:ENST00000339436.11:ENST00000477442.6:ENST00000620941.1:ENST00000620389.1:ENST00000614136.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	149	2	2.19499	2.71988	3.24477	0.00158524	9.20289e-5	0.0367961	0.0085356
chr14	102638609	102638709	5822993	0	+	0.42	(0.408,0.44]	chr14	552490	449	INTRON	INTRON	RCOR1	ENSG00000089902.10	ENST00000262241.7	protein_coding	protein_coding	protein_coding	protein_coding	7	118	2	2.20979	2.71978	3.22977	0.00496289	5.1576e-5	0.0615009	0.00585477
chrX	45012213	45012312	7649997	0	+	0.575758	(0.57,1]	chrX	782751	8	INTRON	INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000675440.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000621147.5:ENST00000475233.1:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	61	2	2.66249	2.7197500000000003	2.77701	9.0016e-4	1.54125e-4	0.0277303	0.0106835
chr1	31044034	31044133	412679	0	-	0.333333	(0.32,0.35]	chr1	49733	148	INTRON	INTRON	PUM1	ENSG00000134644.16	ENST00000426105.7:ENST00000373747.7:ENST00000257075.9:ENST00000424085.6:ENST00000525843.5:ENST00000440538.6:ENST00000373741.8:ENST00000373742.6:ENST00000526215.5:ENST00000525948.5:ENST00000480602.1:ENST00000524516.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	46	2	2.30673	2.71975	3.13277	0.0584434	0.00458313	0.167723	0.0622676
chr7	121216919	121217019	3395938	0	+	0.33	(0.32,0.35]	chr7	317781	669	INTRON	INTRON	CPED1	ENSG00000106034.18	ENST00000310396.10:ENST00000450913.6:ENST00000423795.5:ENST00000466055.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	190	2	2.57369	2.719675	2.86566	3.39814e-4	2.53167e-4	0.0170719	0.0141708
chr16	18145254	18145354	6454086	0	-	0.36	(0.35,0.378]	chr16	621960	1415	INTRON	INTRON	ENSG00000259929:ENSG00000260242	ENSG00000259929.5:ENSG00000260242.1	ENST00000567304.1:ENST00000563866.1	lncRNA	lncRNA	lncRNA	lncRNA	3	59	2	2.4475	2.719615	2.99173	0.0106974	0.00713365	0.0862205	0.0756118
chr7	66925136	66925235	3326272	0	+	0.494949	(0.476,0.515]	chr7	309335	25	INTRON	INTRON	TMEM248	ENSG00000106609.16	ENST00000341567.8:ENST00000607045.5:ENST00000433271.6:ENST00000413593.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	53	2	2.365	2.7196100000000003	3.07422	0.0128901	0.00506023	0.0926667	0.0646039
chr17	66350146	66350246	6662773	0	+	0.38	(0.378,0.408]	chr17	650324	102	INTRON	INTRON	PRKCA	ENSG00000154229.12	ENST00000413366.8:ENST00000578063.5:ENST00000284384.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	74	2	2.35103	2.71956	3.08809	0.014158	5.71831e-4	0.0959618	0.0217398
chr4	17950778	17950878	2117581	0	-	0.32	(0.28,0.32]	chr4	209129	411	INTRON	INTRON	LCORL	ENSG00000178177.17	ENST00000635767.2:ENST00000326877.8:ENST00000675131.1:ENST00000675143.1:ENST00000637787.1:ENST00000675605.1:ENST00000510451.5:ENST00000510121.5:ENST00000675927.1:ENST00000382224.5:ENST00000382226.5:ENST00000676061.1:ENST00000674942.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	67	2	2.70831	2.7195400000000003	2.73077	0.0220748	0.00378444	0.115395	0.0562562
chr8	47973164	47973264	3752173	0	+	0.55	(0.515,0.57]	chr8	349018	1	SS5_PROX	SS5_PROX:INTRON	MCM4	ENSG00000104738.18	ENST00000649838.1:ENST00000648407.1:ENST00000649919.1:ENST00000262105.6:ENST00000649973.1:ENST00000648519.1:ENST00000650216.1:ENST00000647877.1:ENST00000520637.2:ENST00000518382.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	56	2	1.81744	2.7195400000000003	3.62164	0.031028	5.41944e-4	0.143457	0.0215026
chr19	11946671	11946753	7019969	0	+	0.329268	(0.32,0.35]	chr19	697885	1	SS3_PROX	SS3_PROX:INTRON	ZNF700	ENSG00000196757.8	ENST00000622593.4:ENST00000254321.10	protein_coding	protein_coding	protein_coding	protein_coding	2	48	2	2.40308	2.719525	3.03597	0.0417732	0.00832487	0.161736	0.0774402
chr10	22595569	22595668	4579304	0	-	0.50505	(0.476,0.515]	chr10	422005	34	INTRON	INTRON	PIP4K2A	ENSG00000150867.14	ENST00000376573.9:ENST00000545335.5:ENST00000422321.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	39	2	2.63168	2.7194849999999997	2.80729	0.0237106	0.0126008	0.118716	0.0980703
chr19	52550520	52550620	7095489	0	+	0.48	(0.476,0.515]	chr19	711364	25	INTRON	INTRON	ZNF808	ENSG00000198482.14	ENST00000487863.5:ENST00000465448.5:ENST00000359798.9:ENST00000486474.5:ENST00000461779.5:ENST00000461321.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	39	2	2.63168	2.7194849999999997	2.80729	0.0237106	0.0126008	0.118716	0.0980703
chr7	107898551	107898651	3379688	0	+	0.5	(0.476,0.515]	chr7	316570	49	INTRON	INTRON	DLD	ENSG00000091140.15	ENST00000417551.5:ENST00000415325.5:ENST00000440410.5:ENST00000437604.6:ENST00000205402.10:ENST00000451081.5:ENST00000450038.5:ENST00000453354.5:ENST00000460577.5:ENST00000494441.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	39	2	2.63168	2.7194849999999997	2.80729	0.0237106	0.0126008	0.118716	0.0980703
chr2	113586581	113586678	854104	0	+	0.608247	(0.57,1]	chr2	95852	23	INTRON	INTRON	WASH2P	ENSG00000146556.15	ENST00000686495.1:ENST00000692602.1:ENST00000688542.1:ENST00000685302.1:ENST00000685435.1:ENST00000685518.1:ENST00000691953.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	4	38	2	2.56996	2.71944	2.86892	0.00499145	0.00125753	0.0646039	0.0323608
chr22	46670949	46671049	7535078	0	+	0.59	(0.57,1]	chr22	770490	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	GRAMD4	ENSG00000075240.17	ENST00000406902.6:ENST00000361034.7:ENST00000456069.1	protein_coding	protein_coding	protein_coding	protein_coding	3	29	2	2.6547	2.719395	2.78409	0.0116033	0.00346848	0.0889104	0.0539802
chr8	100698958	100699058	4005340	0	-	0.46	(0.44,0.476]	chr8	366563	123	INTRON	INTRON	PABPC1	ENSG00000070756.17	ENST00000518293.5	protein_coding	protein_coding	protein_coding	protein_coding	4	64	2	2.46422	2.719365	2.97451	0.00853825	0.00282908	0.0780043	0.0491595
chr3	196072749	196072846	1897459	0	-	0.319588	(0.28,0.32]	chr3	189968	2	INTRON	INTRON	TFRC	ENSG00000072274.13	ENST00000420415.5:ENST00000360110.9:ENST00000392396.7:ENST00000421258.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	151	2	2.33607	2.7193449999999997	3.10262	0.00114045	0.00104057	0.0307966	0.0296324
chr19	1219513	1219602	6994336	0	+	0.404494	(0.378,0.408]	chr19	692910	1	SS5_PROX	SS5_PROX:INTRON	STK11	ENSG00000118046.17	ENST00000326873.12:ENST00000652231.1:ENST00000589152.5:ENST00000585851.1:ENST00000586358.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	106	2	2.53753	2.7192749999999997	2.90102	0.00271682	3.47934e-4	0.0467523	0.0166215
chr13	25306807	25306905	5457216	0	+	0.336735	(0.32,0.35]	chr13	522871	33	INTRON	INTRON	NUP58	ENSG00000139496.17	ENST00000481980.2:ENST00000490231.6:ENST00000695571.1:ENST00000477876.2:ENST00000695572.1:ENST00000463407.6:ENST00000695573.1:ENST00000381736.8:ENST00000695583.1:ENST00000465068.5:ENST00000460326.5:ENST00000480187.5:ENST00000466694.6:ENST00000381718.8:ENST00000695575.1:ENST00000695574.1:ENST00000495460.2:ENST00000381747.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	62	2	2.68921	2.719255	2.7493	0.0230336	0.00296357	0.118056	0.0500135
chr17	47678696	47678790	6622896	0	+	0.446809	(0.44,0.476]	chr17	646108	4	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	KPNB1	ENSG00000108424.11	ENST00000535458.6:ENST00000583648.6:ENST00000290158.9:ENST00000540627.5:ENST00000582097.5:ENST00000677341.1:ENST00000580573.2:ENST00000580158.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	71	2	2.69297	2.719215	2.74546	0.00333494	0.00326603	0.0528877	0.0508595
chr12	66167819	66167918	5352848	0	-	0.323232	(0.32,0.35]	chr12	511479	63	INTRON	INTRON	TMBIM4	ENSG00000155957.19	ENST00000358230.8:ENST00000544599.5:ENST00000398033.8:ENST00000633367.1:ENST00000286424.12:ENST00000545407.5:ENST00000542724.5:ENST00000545504.1:ENST00000534930.1:ENST00000542072.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	46	2	2.64129	2.71918	2.79707	0.0222819	0.0170923	0.124303	0.104099
chr2	58224954	58225053	1126591	0	-	0.333333	(0.32,0.35]	chr2	120953	10	INTRON	INTRON	FANCL	ENSG00000115392.13	ENST00000696400.1:ENST00000403295.8:ENST00000696492.1:ENST00000427708.7:ENST00000696314.1:ENST00000696315.1:ENST00000696454.1:ENST00000696508.1:ENST00000696548.1:ENST00000696542.1:ENST00000696319.1:ENST00000403676.6:ENST00000696433.1:ENST00000696434.1:ENST00000696499.1:ENST00000696564.1:ENST00000402135.8:ENST00000696546.1:ENST00000233741.9:ENST00000696316.1:ENST00000696378.1:ENST00000696435.1:ENST00000696493.1:ENST00000696543.1:ENST00000696544.1:ENST00000696545.1:ENST00000696565.1:ENST00000696620.1:ENST00000696621.1:ENST00000696635.1:ENST00000696364.1:ENST00000696634.1:ENST00000696317.1:ENST00000696622.1:ENST00000696467.1:ENST00000696547.1:ENST00000449070.6:ENST00000696305.1:ENST00000417361.2:ENST00000696338.1:ENST00000696361.1:ENST00000696318.1:ENST00000696371.1:ENST00000696409.1:ENST00000696410.1:ENST00000696455.1:ENST00000696468.1:ENST00000696527.1:ENST00000696567.1:ENST00000696324.1:ENST00000696566.1:ENST00000696623.1:ENST00000446381.6:ENST00000696469.1:ENST00000696624.1:ENST00000696411.1:ENST00000470506.2:ENST00000696358.1:ENST00000696373.1:ENST00000696394.1:ENST00000696320.1:ENST00000696395.1:ENST00000696341.1:ENST00000696340.1:ENST00000696374.1:ENST00000696342.1:ENST00000696325.1:ENST00000696399.1:ENST00000696398.1:ENST00000696306.1:ENST00000696344.1:ENST00000696343.1:ENST00000696362.1:ENST00000696528.1:ENST00000696326.1:ENST00000696625.1:ENST00000696510.1:ENST00000696438.1:ENST00000696496.1:ENST00000696509.1:ENST00000696569.1:ENST00000696457.1:ENST00000696458.1:ENST00000696473.1:ENST00000696495.1:ENST00000696415.1:ENST00000696472.1:ENST00000696459.1:ENST00000696416.1:ENST00000696530.1:ENST00000696460.1:ENST00000696570.1:ENST00000696531.1:ENST00000696307.1:ENST00000696345.1:ENST00000696377.1:ENST00000696417.1:ENST00000696594.1:ENST00000696595.1:ENST00000696379.1:ENST00000696346.1:ENST00000696380.1:ENST00000696347.1:ENST00000696461.1:ENST00000696596.1:ENST00000696549.1:ENST00000696597.1:ENST00000696550.1:ENST00000696598.1:ENST00000696321.1:ENST00000696476.1:ENST00000696477.1:ENST00000696511.1:ENST00000481670.3:ENST00000696403.1:ENST00000696551.1:ENST00000696308.1:ENST00000696418.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	46	2	2.64129	2.71918	2.79707	0.0222819	0.0170923	0.124303	0.104099
chr20	21321596	21321695	7248320	0	+	0.343434	(0.32,0.35]	chr20	735885	178	INTRON	INTRON	XRN2	ENSG00000088930.8	ENST00000377191.5	protein_coding	protein_coding	protein_coding	protein_coding	2	46	2	2.64129	2.71918	2.79707	0.0222819	0.0170923	0.124303	0.104099
chr1	46312396	46312495	96627	0	+	0.484848	(0.476,0.515]	chr1	12977	17	INTRON	INTRON	UQCRH	ENSG00000173660.12	ENST00000311672.10:ENST00000489056.5:ENST00000496387.5:ENST00000460947.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	104	2	2.5238	2.719175	2.91455	0.00218334	4.32026e-4	0.0435144	0.0190829
chrX	53671773	53671873	7821760	0	-	0.37	(0.35,0.378]	chrX	798234	173	INTRON	INTRON	HUWE1	ENSG00000086758.16	ENST00000262854.11:ENST00000342160.7:ENST00000218328.12:ENST00000446750.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	81	2	1.40722	2.71906	4.0309	0.0733776	7.36864e-5	0.190105	0.00714826
chr2	110646157	110646256	1206529	0	-	0.393939	(0.378,0.408]	chr2	128640	35	INTRON	INTRON	BUB1	ENSG00000169679.15	ENST00000302759.11:ENST00000535254.6:ENST00000409311.5:ENST00000671097.1:ENST00000466333.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	106	2	2.56413	2.71901	2.87389	0.0024299	4.01435e-4	0.0444645	0.0179994
chr12	93394819	93394903	5189111	0	+	0.345238	(0.32,0.35]	chr12	490800	1	SS5_PROX	SS5_PROX:INTRON	NUDT4	ENSG00000173598.14	ENST00000337179.9:ENST00000415493.7:ENST00000549992.5:ENST00000550056.5:ENST00000547014.5:ENST00000548662.5:ENST00000546925.1	protein_coding	protein_coding	protein_coding	protein_coding	11	134	2	1.71455	2.718985	3.72342	0.0062153	6.58762e-4	0.0717416	0.0234233
chr17	43020660	43020757	6774975	0	-	0.494845	(0.476,0.515]	chr17	667669	5	INTRON	INTRON	VAT1	ENSG00000108828.16	ENST00000355653.8:ENST00000587173.5:ENST00000590924.5:ENST00000587062.1	protein_coding	protein_coding	protein_coding	protein_coding	2	41	2	2.13854	2.718965	3.29939	0.0776563	0.00211868	0.196285	0.0425644
chr19	19428989	19429089	7035580	0	+	0.39	(0.378,0.408]	chr19	701439	6	INTRON	INTRON	GATAD2A	ENSG00000167491.18	ENST00000494516.6:ENST00000360315.7:ENST00000609040.5:ENST00000417582.6:ENST00000683918.1:ENST00000448576.6:ENST00000432704.5:ENST00000404158.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	135	2	2.20258	2.71896	3.23534	0.00323986	5.26448e-5	0.0507788	0.00591845
chr10	131912998	131913098	4536986	0	+	0.45	(0.44,0.476]	chr10	418865	4	SS5_PROX	SS5_PROX:INTRON	PPP2R2D	ENSG00000175470.20	ENST00000455566.6:ENST00000616467.4:ENST00000482010.6:ENST00000470416.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	64	2	1.92837	2.718955	3.50954	0.0222222	0.00116647	0.124303	0.0312127
chrX	1452840	1452929	7742782	0	-	0.741573	(0.57,1]	chrX	792910	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	ASMTL	ENSG00000169093.16	ENST00000534940.6:ENST00000381317.9:ENST00000381333.9:ENST00000474865.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	29	2	2.17026	2.71893	3.2676	0.0220522	0.00176203	0.123836	0.0376652
chr1	12025679	12025777	26887	0	+	0.44898	(0.44,0.476]	chr1	3206	24	INTRON	INTRON	MIIP	ENSG00000116691.11	ENST00000478749.5:ENST00000235332.6:ENST00000466860.5:ENST00000498685.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	84	2	2.30982	2.7189050000000003	3.12799	0.0050635	0.00140739	0.0621733	0.0344267
chr3	172797333	172797433	1563698	0	+	0.43	(0.408,0.44]	chr3	161807	104	INTRON	INTRON	ECT2	ENSG00000114346.14	ENST00000232458.9:ENST00000540509.5:ENST00000392692.8:ENST00000417960.5:ENST00000441497.6	protein_coding	protein_coding	protein_coding	protein_coding	7	113	2	2.71564	2.7188600000000003	2.72208	0.00364449	1.52995e-4	0.0535094	0.0106628
chr9	136442822	136442922	4374600	0	-	0.48	(0.476,0.515]	chr9	402942	6	INTRON	INTRON	SEC16A	ENSG00000148396.19	ENST00000467838.2:ENST00000290037.10:ENST00000313050.11:ENST00000371706.8:ENST00000453963.5:ENST00000277537.10:ENST00000313084.9:ENST00000684901.1:ENST00000689049.1:ENST00000689439.1:ENST00000688461.1:ENST00000688052.1:ENST00000690691.1:ENST00000431893.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	86	2	2.29359	2.718845	3.1441	0.00584957	5.63876e-4	0.0689807	0.0219303
chr6	154738288	154738387	3001865	0	+	0.353535	(0.35,0.378]	chr6	280731	40	INTRON	INTRON	SCAF8	ENSG00000213079.10	ENST00000367186.7:ENST00000417268.3:ENST00000461219.5:ENST00000367178.8:ENST00000464628.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	57	2	2.44701	2.718725	2.99044	0.00900997	0.00894806	0.0851009	0.0799922
chr1	16446486	16446584	36140	0	+	0.44898	(0.44,0.476]	chr1	4401	24	INTRON	INTRON	NECAP2	ENSG00000157191.20	ENST00000504551.6:ENST00000337132.10:ENST00000457722.6:ENST00000443980.6:ENST00000504858.5:ENST00000508680.5:ENST00000492095.5:ENST00000459640.5:ENST00000496239.5:ENST00000513161.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	53	2	2.02558	2.7186700000000004	3.41176	0.0363567	0.00130987	0.138959	0.0333932
chr19	2452393	2452492	7116137	0	-	0.50505	(0.476,0.515]	chr19	715394	75	INTRON	INTRON	LMNB2	ENSG00000176619.13	ENST00000325327.4	protein_coding	protein_coding	protein_coding	protein_coding	4	65	2	2.24612	2.718655	3.19119	0.00799949	0.00325748	0.0766625	0.0524329
chr17	8378124	8378224	6720357	0	-	0.47	(0.44,0.476]	chr17	659437	4	SS3_PROX	SS3_PROX:INTRON	RPL26	ENSG00000161970.15	ENST00000648839.1:ENST00000584164.6:ENST00000584906.6:ENST00000583011.6:ENST00000578069.1:ENST00000584441.5:ENST00000582485.5:ENST00000582556.5:ENST00000585176.1:ENST00000584343.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	78	2	2.23425	2.718575	3.2029	0.00441123	0.00308681	0.0587529	0.0510391
chr22	30016898	30016998	7498882	0	+	0.43	(0.408,0.44]	chr22	765106	2	SS5_PROX	SS5_PROX:INTRON	MTMR3	ENSG00000100330.16	ENST00000333027.7:ENST00000401950.7:ENST00000323630.9:ENST00000351488.7:ENST00000406629.1	protein_coding	protein_coding	protein_coding	protein_coding	3	54	2	2.6542	2.7185449999999998	2.78289	0.0227514	0.0022785	0.117618	0.0437013
chrX	41342046	41342135	7645735	0	+	0.359551	(0.35,0.378]	chrX	782509	1	EXON_MRNA	EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DDX3X	ENSG00000215301.11	ENST00000625837.2:ENST00000626301.2:ENST00000629785.2:ENST00000630255.2:ENST00000630370.2:ENST00000630858.2:ENST00000629496.3:ENST00000478993.5:ENST00000457138.7:ENST00000644876.2:ENST00000399959.7:ENST00000644074.1:ENST00000645338.1:ENST00000646196.1:ENST00000642793.1:ENST00000646940.1:ENST00000644307.1:ENST00000645561.1:ENST00000645080.1:ENST00000642597.1:ENST00000642722.1:ENST00000644109.1:ENST00000644958.1:ENST00000646122.1:ENST00000644513.1:ENST00000645589.1:ENST00000441189.4:ENST00000646822.1:ENST00000631641.2:ENST00000615742.4:ENST00000646223.1:ENST00000643963.1:ENST00000646319.1:ENST00000642624.1:ENST00000542215.5:ENST00000644073.1:ENST00000644677.1:ENST00000615313.5:ENST00000642322.1:ENST00000622198.5:ENST00000645120.1:ENST00000646107.1:ENST00000646627.1:ENST00000645253.1:ENST00000642589.1:ENST00000645380.1:ENST00000646390.1:ENST00000642424.1:ENST00000642161.1:ENST00000645574.1:ENST00000646679.1:ENST00000642763.1:ENST00000644260.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	88	2	2.0653	2.718525	3.37175	0.00473276	0.00236696	0.0633849	0.043778
chr8	140850365	140850464	4078554	0	-	0.565657	(0.515,0.57]	chr8	370519	33	INTRON	INTRON	PTK2	ENSG00000169398.20	ENST00000696786.1:ENST00000522684.5:ENST00000395218.3:ENST00000519654.5:ENST00000521059.5:ENST00000517887.5:ENST00000519993.5:ENST00000340930.7:ENST00000519419.5:ENST00000524357.5:ENST00000521791.5:ENST00000523067.5:ENST00000520828.5:ENST00000520475.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	56	2	1.63184	2.71852	3.8052	0.0545832	1.67082e-4	0.165292	0.0111796
chr1	19203010	19203110	386770	0	-	0.52	(0.515,0.57]	chr1	46143	8	INTRON	INTRON	UBR4	ENSG00000127481.15	ENST00000375254.8	protein_coding	protein_coding	protein_coding	protein_coding	14	192	2	2.52398	2.718505	2.91303	1.15528e-4	1.64175e-5	0.00969484	0.00305726
chr16	16509815	16509915	6310960	0	+	0.45	(0.44,0.476]	chr16	604098	98	INTRON	INTRON	ENSG00000260126	ENSG00000260126.2	ENST00000567465.2	lncRNA	lncRNA	lncRNA	lncRNA	3	53	2	2.29126	2.718425	3.14559	0.0165638	0.00384923	0.102621	0.0562562
chr16	23908445	23908545	6324485	0	+	0.45	(0.44,0.476]	chr16	605701	147	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000498739.1	protein_coding	protein_coding	protein_coding	protein_coding	5	72	2	2.08453	2.7184	3.35227	0.00689	0.0022005699999999998	0.0750118	0.0417893
chr11	47171896	47171992	4948860	0	-	0.541667	(0.515,0.57]	chr11	463902	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ARFGAP2	ENSG00000149182.15	ENST00000426335.6:ENST00000627920.2:ENST00000524782.6:ENST00000395449.7:ENST00000533243.5:ENST00000526342.5:ENST00000527927.5:ENST00000532478.5:ENST00000532438.5:ENST00000529455.5:ENST00000525398.5:ENST00000526948.1:ENST00000531750.5:ENST00000525314.5:ENST00000629231.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	34	2	2.52504	2.71822	2.9114	0.029342	0.00826019	0.128055	0.0813266
chr1	37690441	37690529	424689	0	-	0.534091	(0.515,0.57]	chr1	51412	6	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	C1orf109	ENSG00000116922.15	ENST00000494120.1:ENST00000486637.2:ENST00000358011.8:ENST00000464085.5:ENST00000491981.5:ENST00000461359.5:ENST00000477060.1:ENST00000491797.1:ENST00000488137.5:ENST00000472584.1:ENST00000619962.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	34	2	2.68833	2.718025	2.74772	0.0184931	0.0142192	0.108861	0.103638
chr10	96148626	96148725	4502383	0	+	0.545455	(0.515,0.57]	chr10	414481	130	INTRON	INTRON	ZNF518A	ENSG00000177853.15	ENST00000614149.2:ENST00000488700.5:ENST00000624776.4:ENST00000539666.5:ENST00000563195.1:ENST00000316045.10	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	34	2	2.68833	2.718025	2.74772	0.0184931	0.0142192	0.108861	0.103638
chrX	71299097	71299191	7678172	0	+	0.521277	(0.515,0.57]	chrX	786115	4	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NONO	ENSG00000147140.17	ENST00000677446.1:ENST00000677274.1:ENST00000535149.5:ENST00000420903.6:ENST00000678335.1:ENST00000678830.1:ENST00000677826.1:ENST00000473525.2:ENST00000678437.1:ENST00000676499.1:ENST00000676495.1:ENST00000678323.1:ENST00000677766.1:ENST00000679267.1:ENST00000373856.8:ENST00000677879.1:ENST00000677245.1:ENST00000373841.5:ENST00000276079.13:ENST00000679029.1:ENST00000677218.1:ENST00000676797.1:ENST00000678660.1:ENST00000677014.1:ENST00000678231.1:ENST00000474431.5:ENST00000677612.1:ENST00000677977.1:ENST00000472185.1:ENST00000450092.6:ENST00000454976.2:ENST00000490044.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	34	2	2.68833	2.718025	2.74772	0.0184931	0.0142192	0.108861	0.103638
chr20	35733294	35733392	7336462	0	-	0.479592	(0.476,0.515]	chr20	747476	6	INTRON	INTRON	RBM39	ENSG00000131051.24	ENST00000253363.11:ENST00000639702.1:ENST00000656873.1:ENST00000463004.5:ENST00000361162.10:ENST00000461283.5:ENST00000403542.6:ENST00000338163.10:ENST00000528062.7:ENST00000429968.5:ENST00000444878.5:ENST00000665058.1:ENST00000374038.7:ENST00000412738.5:ENST00000434927.5:ENST00000425184.5:ENST00000481037.5:ENST00000455343.5:ENST00000416108.5:ENST00000426951.5:ENST00000477334.1:ENST00000442447.5:ENST00000449489.5:ENST00000433027.5:ENST00000487604.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	112	2	2.7004	2.71802	2.73564	0.00333144	1.70478e-4	0.0512081	0.0113543
chr15	52027873	52027973	6029109	0	+	0.41	(0.408,0.44]	chr15	574425	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	MAPK6	ENSG00000069956.14	ENST00000560802.1:ENST00000691380.1:ENST00000558063.5:ENST00000560254.1:ENST00000681888.1:ENST00000261845.7:ENST00000680066.1:ENST00000680777.1:ENST00000558100.1:ENST00000680652.1:ENST00000558841.1:ENST00000558891.1:ENST00000560774.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	98	2	2.2616	2.7180150000000003	3.17443	0.00321416	5.19132e-4	0.0523065	0.0209322
chr7	119620677	119620777	3627543	0	-	0.5	(0.476,0.515]	chr7	337315	1202	INTRON	INTRON	LINC02476	ENSG00000225546.6	ENST00000660268.1	lncRNA	lncRNA	lncRNA	lncRNA	2	41	2	2.38442	2.71797	3.05152	0.0417472	0.0064848	0.161736	0.0699952
chr19	12541224	12541324	7139854	0	-	0.54	(0.515,0.57]	chr19	720330	4	SS5_PROX	SS5_PROX:INTRON	ZNF564	ENSG00000249709.8	ENST00000339282.12:ENST00000427105.1:ENST00000596193.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	63	2	1.58964	2.717945	3.84625	0.0408	1.34155e-4	0.1451	0.00998237
chr7	107920616	107920713	3379929	0	+	0.515464	(0.515,0.57]	chr7	316635	15	UTR3	UTR3:EXON_MRNA:INTRON	DLD	ENSG00000091140.15	ENST00000417551.5:ENST00000205402.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	63	2	1.58964	2.717945	3.84625	0.0408	1.34155e-4	0.1451	0.00998237
chr6	87700593	87700677	3152905	0	-	0.404762	(0.378,0.408]	chr6	294115	2	EXON_LNCRNA	EXON_LNCRNA:INTRON	AKIRIN2	ENSG00000135334.9	ENST00000257787.6:ENST00000420494.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	113	2	2.07903	2.717895	3.35676	0.00428711	2.33175e-4	0.0599065	0.013966
chr5	180496004	180496088	2561879	0	+	0.488095	(0.476,0.515]	chr5	245081	4	SS5_PROX	SS5_PROX:INTRON	CNOT6	ENSG00000113300.13	ENST00000261951.9:ENST00000393356.7:ENST00000507016.1:ENST00000618123.4:ENST00000502447.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	85	2	2.13573	2.717855	3.29998	0.0119549	1.88247e-4	0.0899583	0.011951
chr2	148017611	148017711	1242746	0	-	0.45	(0.44,0.476]	chr2	131884	352	INTRON	INTRON	ORC4	ENSG00000115947.14	ENST00000392857.10:ENST00000264169.6:ENST00000536575.5:ENST00000535373.5:ENST00000540442.5:ENST00000461711.5:ENST00000490200.5:ENST00000416719.5:ENST00000457954.5:ENST00000440042.1:ENST00000495601.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	85	2	2.18344	2.71783	3.25222	0.0102102	2.39476e-4	0.0850389	0.0136403
chr17	6916877	6916976	6717372	0	-	0.353535	(0.35,0.378]	chr17	658643	352	INTRON	INTRON	ALOX12-AS1	ENSG00000215067.11	ENST00000653385.1:ENST00000659418.1:ENST00000572385.5:ENST00000570562.5:ENST00000575889.5	lncRNA	lncRNA	lncRNA	lncRNA	2	45	2	2.39746	2.7178	3.03814	0.041314	0.00767003	0.161534	0.075364
chr22	16790892	16790992	7546308	0	-	0.34	(0.32,0.35]	chr22	771315	61	INTRON	INTRON	XKR3	ENSG00000172967.8	ENST00000331428.5:ENST00000684488.1	protein_coding	protein_coding	protein_coding	protein_coding	5	100	2	2.44057	2.71776	2.99495	0.00466047	0.00102621	0.0600108	0.0294094
chr1	53792532	53792630	460140	0	-	0.306122	(0.28,0.32]	chr1	55376	30	INTRON	INTRON	NDC1	ENSG00000058804.12	ENST00000371429.4	protein_coding	protein_coding	protein_coding	protein_coding	2	50	2	2.2609	2.717715	3.17453	0.0671429	0.00429297	0.183051	0.0599065
chr7	101821677	101821777	3366405	0	+	0.52	(0.515,0.57]	chr7	315215	23	INTRON	INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000497815.5:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000607092.1:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000558469.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	83	2	2.16301	2.71771	3.27241	0.00510122	1.80226e-4	0.0626075	0.0116696
chr1	51837255	51837355	454877	0	-	0.35	(0.32,0.35]	chr1	54613	4	SS5_PROX	SS5_PROX:INTRON	NRDC	ENSG00000078618.23	ENST00000354831.11:ENST00000539524.5:ENST00000352171.12:ENST00000485608.5:ENST00000475715.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	61	2	2.35591	2.7176299999999998	3.07935	0.0128129	0.00724137	0.0990564	0.0729826
chr12	91449047	91449147	5383706	0	-	0.33	(0.32,0.35]	chr12	513479	493	INTRON	INTRON	ENSG00000289605	ENSG00000289605.1	ENST00000685093.1	lncRNA	lncRNA	lncRNA	lncRNA	3	61	2	2.35591	2.7176299999999998	3.07935	0.0128129	0.00724137	0.0990564	0.0729826
chrX	110009458	110009558	7700101	0	+	0.29	(0.28,0.32]	chrX	788130	49	INTRON	INTRON	TMEM164	ENSG00000157600.12	ENST00000372072.7:ENST00000471255.5:ENST00000372073.5:ENST00000372068.7:ENST00000288381.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	109	2	2.4323	2.717605	3.00291	0.00540168	0.00110829	0.0644179	0.0305035
chr3	42628690	42628788	1406261	0	+	0.469388	(0.44,0.476]	chr3	147680	16	EXON_MRNA	EXON_MRNA:INTRON	NKTR	ENSG00000114857.19	ENST00000468735.6:ENST00000429888.5:ENST00000232978.13:ENST00000465584.5:ENST00000466553.1:ENST00000498730.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	15	238	2	2.33137	2.71758	3.10379	3.9825e-4	6.1607e-6	0.0185763	0.00174279
chr19	53078207	53078306	7210310	0	-	0.484848	(0.476,0.515]	chr19	731876	4	INTRON	INTRON	ZNF160	ENSG00000170949.18	ENST00000599056.5:ENST00000418871.5:ENST00000429604.5:ENST00000683776.1:ENST00000599247.5:ENST00000601982.5:ENST00000355147.9:ENST00000599729.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	184	2	2.40165	2.71745	3.03325	2.26138e-4	8.42341e-5	0.0132848	0.00820305
chr1	110959653	110959752	522194	0	-	0.50505	(0.476,0.515]	chr1	61360	65	INTRON	INTRON	LRIF1	ENSG00000121931.16	ENST00000369763.5:ENST00000485275.2	protein_coding	protein_coding	protein_coding	protein_coding	10	163	2	2.04205	2.717415	3.39278	0.00400309	5.08862e-6	0.0551303	0.00154058
chr20	38083595	38083695	7269384	0	+	0.46	(0.44,0.476]	chr20	738717	131	INTRON	INTRON	RPRD1B	ENSG00000101413.12	ENST00000462548.6:ENST00000373433.9:ENST00000449186.2:ENST00000618318.1:ENST00000614670.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	63	2	2.30673	2.71736	3.12799	0.0055175	0.0050635	0.0672816	0.0621733
chr10	59862287	59862387	4623437	0	-	0.49	(0.476,0.515]	chr10	425682	92	INTRON	INTRON	CCDC6	ENSG00000108091.11	ENST00000263102.7	protein_coding	protein_coding	protein_coding	protein_coding	2	42	2	2.28264	2.7173299999999996	3.15202	0.0534132	0.00455841	0.179876	0.0595107
chr9	130759854	130759954	4214323	0	+	0.5	(0.476,0.515]	chr9	386427	450	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000393293.4	protein_coding	protein_coding	protein_coding	protein_coding	2	42	2	2.28264	2.7173299999999996	3.15202	0.0534132	0.00455841	0.179876	0.0595107
chr1	167982202	167982302	248948	0	+	0.38	(0.378,0.408]	chr1	29564	68	INTRON	INTRON	DCAF6	ENSG00000143164.16	ENST00000450548.5:ENST00000470919.5:ENST00000432587.6:ENST00000367843.7:ENST00000470721.5:ENST00000367840.4:ENST00000312263.10:ENST00000455334.5:ENST00000491067.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	122	2	2.2403	2.717315	3.19433	0.00125943	5.08283e-4	0.03295	0.020816
chr17	47215914	47216013	6621417	0	+	0.464646	(0.44,0.476]	chr17	645806	16	INTRON	INTRON	MYL4	ENSG00000198336.9	ENST00000571981.5:ENST00000572316.5:ENST00000354968.5:ENST00000570772.5:ENST00000536623.6:ENST00000576874.5:ENST00000573747.6:ENST00000393450.5:ENST00000572303.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	63	2	2.08211	2.71719	3.35227	0.0130715	0.0022005699999999998	0.0996047	0.0417893
chr7	152380560	152380660	3680739	0	-	0.47	(0.44,0.476]	chr7	341660	215	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000682301.1:ENST00000452749.2:ENST00000680867.1:ENST00000683800.1:ENST00000684278.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	63	2	2.08211	2.71719	3.35227	0.0130715	0.0022005699999999998	0.0996047	0.0417893
chr18	9104979	9105079	6868616	0	+	0.33	(0.32,0.35]	chr18	680508	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	NDUFV2	ENSG00000178127.13	ENST00000577703.1:ENST00000318388.11:ENST00000583375.5:ENST00000400033.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	61	2	1.26251	2.71716	4.17181	0.0481909	0.04531	0.171808	0.149888
chr15	72500344	72500443	6059421	0	+	0.353535	(0.35,0.378]	chr15	576858	31	INTRON	INTRON	ARIH1	ENSG00000166233.15	ENST00000379887.9:ENST00000570085.5:ENST00000564062.1:ENST00000567762.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	57	2	2.39583	2.716985	3.03814	0.0107976	0.00767003	0.0920575	0.075364
chr20	5585560	5585655	7312086	0	-	0.210526	[0,0.28]	chr20	744594	14	EXON_MRNA	EXON_MRNA:INTRON	GPCPD1	ENSG00000125772.14	ENST00000379019.7:ENST00000481038.5:ENST00000481690.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	200	2	2.4045	2.716965	3.02943	0.00723722	6.34268e-5	0.0729826	0.00658818
chr8	129340334	129340434	4058662	0	-	0.42	(0.408,0.44]	chr8	369539	367	INTRON	INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000657400.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1	lncRNA	lncRNA	lncRNA	lncRNA	5	87	2	2.56776	2.71694	2.86612	0.00227507	0.00157924	0.0426265	0.0366789
chr7	128560522	128560622	3407649	0	+	0.23	[0,0.28]	chr7	318333	264	INTRON	INTRON	ENSG00000280828	ENSG00000280828.1	ENST00000479267.2	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	3	76	2	2.02265	2.716895	3.41114	0.0449017	0.00211753	0.149888	0.0425644
chr22	20111286	20111384	7478558	0	+	0.540816	(0.515,0.57]	chr22	762762	13	UTR3	UTR3:EXON_MRNA	DGCR8	ENSG00000128191.16	ENST00000383024.6:ENST00000351989.8:ENST00000495826.5:ENST00000407755.1:ENST00000498171.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	17	232	2	2.36437	2.7168900000000002	3.06941	1.13765e-4	4.91862e-6	0.00913877	0.00163836
chrX	151970639	151970726	7908597	0	-	0.37931	(0.378,0.408]	chrX	804810	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GABRE	ENSG00000102287.19	ENST00000370328.4:ENST00000441219.5:ENST00000491339.1:ENST00000417300.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	188	2	2.15643	2.7168599999999996	3.27729	5.48286e-4	7.71902e-5	0.0213049	0.00784644
chr16	1365455	1365553	6427466	0	-	0.602041	(0.57,1]	chr16	617784	24	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	UNKL	ENSG00000059145.19	ENST00000389221.9:ENST00000248104.11:ENST00000403703.5:ENST00000562537.1:ENST00000674376.1:ENST00000397464.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	40	2	1.62421	2.71672	3.80923	0.0376752	1.11529e-4	0.156361	0.00945289
chr6	124969487	124969586	2951542	0	+	0.333333	(0.32,0.35]	chr6	277668	57	INTRON	INTRON	RNF217	ENSG00000146373.17	ENST00000521654.7:ENST00000560949.5:ENST00000519971.1:ENST00000519565.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	85	2	2.27097	2.71667	3.16237	0.00550276	0.00347642	0.0648867	0.0540643
chr10	68436210	68436310	4639403	0	-	0.31	(0.28,0.32]	chr10	426680	33	INTRON	INTRON	DNA2	ENSG00000138346.15	ENST00000358410.8:ENST00000551118.6:ENST00000399179.6:ENST00000399180.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	49	2	2.51488	2.7165999999999997	2.91832	0.0380957	0.0102484	0.141678	0.089002
chr1	32171391	32171490	64104	0	+	0.262626	[0,0.28]	chr1	8150	6	UTR3	UTR3:EXON_MRNA	KPNA6	ENSG00000025800.14	ENST00000373625.8:ENST00000471599.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	264	2	2.55606	2.71658	2.8771	0.00226642	5.39245e-5	0.0425751	0.0060155
chr3	23862872	23862972	1388299	0	+	0.47	(0.44,0.476]	chr3	145385	510	INTRON	INTRON	UBE2E1	ENSG00000170142.12	ENST00000306627.8:ENST00000346855.7:ENST00000495141.5:ENST00000442670.5:ENST00000424381.5:ENST00000467766.5:ENST00000475680.5:ENST00000452012.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	54	2	1.83899	2.71658	3.59417	0.0589734	5.78231e-4	0.167915	0.0218253
chr12	57533752	57533803	5339569	0	-	0.294118	(0.28,0.32]	chr12	510855	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DCTN2	ENSG00000175203.17	ENST00000676646.1:ENST00000679307.1:ENST00000551142.2:ENST00000548249.6:ENST00000678505.1:ENST00000552390.6:ENST00000676956.1:ENST00000678521.1:ENST00000678322.1:ENST00000543672.6:ENST00000678653.1:ENST00000678247.1:ENST00000434715.7:ENST00000550201.5:ENST00000549394.5:ENST00000546758.5:ENST00000550750.2:ENST00000551611.6:ENST00000550086.5:ENST00000550954.5:ENST00000551872.1:ENST00000548736.1:ENST00000546670.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	49	2	2.57195	2.71654	2.86113	0.0331711	0.0122675	0.133994	0.0969406
chr22	16643998	16644097	7473790	0	+	0.292929	(0.28,0.32]	chr22	762013	34	INTRON	INTRON	TPTEP1	ENSG00000100181.22	ENST00000558085.6:ENST00000400593.6:ENST00000426585.5:ENST00000383140.7	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	2	49	2	2.57195	2.71654	2.86113	0.0331711	0.0122675	0.133994	0.0969406
chrX	11188027	11188127	7759228	0	-	0.32	(0.28,0.32]	chrX	793484	12	INTRON	INTRON	ARHGAP6	ENSG00000047648.23	ENST00000657361.1:ENST00000380736.5:ENST00000337414.9:ENST00000495242.5:ENST00000303025.10:ENST00000489330.6:ENST00000380718.1:ENST00000380717.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	49	2	2.57195	2.71654	2.86113	0.0331711	0.0122675	0.133994	0.0969406
chr19	5940522	5940621	7125223	0	-	0.525253	(0.515,0.57]	chr19	717348	43	INTRON	INTRON	RANBP3	ENSG00000031823.14	ENST00000340578.10:ENST00000439268.6:ENST00000592771.5:ENST00000591092.5:ENST00000034275.12:ENST00000587479.2:ENST00000592621.5:ENST00000590623.5:ENST00000591736.5:ENST00000590953.5:ENST00000588879.5:ENST00000587159.5:ENST00000586117.5:ENST00000589353.5:ENST00000587463.5:ENST00000588010.5:ENST00000591124.5:ENST00000585339.5:ENST00000592133.5:ENST00000591881.5:ENST00000589886.5:ENST00000587263.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	62	2	1.89462	2.71653	3.53844	0.0139002	7.92613e-4	0.10247	0.0259663
chr17	63799725	63799805	6661221	0	+	0.3875	(0.378,0.408]	chr17	649972	1	SS5_PROX	SS5_PROX:INTRON	DDX42	ENSG00000198231.14	ENST00000578681.5:ENST00000583590.5:ENST00000389924.7:ENST00000359353.9:ENST00000578137.5:ENST00000584261.5:ENST00000577940.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	100	2	1.95974	2.71648	3.47322	0.0034794	0.00147803	0.0541004	0.0348908
chr20	5608278	5608377	7312318	0	-	0.393939	(0.378,0.408]	chr20	744619	35	INTRON	INTRON	GPCPD1	ENSG00000125772.14	ENST00000379019.7:ENST00000481690.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	55	2	2.70298	2.716455	2.72993	0.0188736	0.00325723	0.108861	0.0524329
chr14	102603521	102603621	5822642	0	+	0.39	(0.378,0.408]	chr14	552490	98	INTRON	INTRON	RCOR1	ENSG00000089902.10	ENST00000262241.7	protein_coding	protein_coding	protein_coding	protein_coding	5	76	2	1.56313	2.71632	3.86951	0.0474151	1.55755e-4	0.153019	0.0106835
chr1	12340091	12340190	29370	0	+	0.40404	(0.378,0.408]	chr1	3596	14	INTRON	INTRON	VPS13D	ENSG00000048707.15	ENST00000620676.6:ENST00000613099.4:ENST00000011700.10:ENST00000646917.1:ENST00000460333.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	101	2	2.59919	2.716315	2.83344	0.00244811	6.41208e-4	0.0445777	0.0228915
chr2	186496928	186497028	942921	0	+	0.31	(0.28,0.32]	chr2	103246	12	INTRON	INTRON	ZC3H15	ENSG00000065548.18	ENST00000421536.5:ENST00000337859.11:ENST00000437396.1:ENST00000481101.5:ENST00000468120.5:ENST00000496289.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	66	2	2.42868	2.716315	3.00395	0.0105331	0.0101329	0.0908969	0.0850389
chr1	113083629	113083728	188198	0	+	0.50505	(0.476,0.515]	chr1	20854	96	INTRON	INTRON	LRIG2	ENSG00000198799.12	ENST00000361127.6	protein_coding	protein_coding	protein_coding	protein_coding	2	39	2	2.48527	2.716095	2.94692	0.03496	0.00794331	0.13747500000000001	0.0797304
chr12	55783785	55783885	5332482	0	-	0.48	(0.476,0.515]	chr12	509126	228	INTRON	INTRON	SARNP	ENSG00000205323.9	ENST00000546604.5:ENST00000552884.5:ENST00000336133.8:ENST00000552080.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	39	2	2.48527	2.716095	2.94692	0.03496	0.00794331	0.13747500000000001	0.0797304
chr17	51016839	51016936	6795964	0	-	0.484536	(0.476,0.515]	chr17	670973	7	INTRON	INTRON	SPAG9	ENSG00000008294.22	ENST00000262013.12:ENST00000510283.5:ENST00000505279.5:ENST00000357122.8:ENST00000514613.5:ENST00000505173.5:ENST00000511795.1:ENST00000576492.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	39	2	2.48527	2.716095	2.94692	0.03496	0.00794331	0.13747500000000001	0.0797304
chr2	200884991	200885081	1310271	0	-	0.488889	(0.476,0.515]	chr2	137092	2	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	PPIL3	ENSG00000240344.9	ENST00000286175.12:ENST00000392283.9:ENST00000465823.5:ENST00000415562.5:ENST00000409264.6:ENST00000409361.5:ENST00000409449.5:ENST00000497263.5:ENST00000443398.5:ENST00000457063.1:ENST00000492074.5:ENST00000470442.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	39	2	2.48527	2.716095	2.94692	0.03496	0.00794331	0.13747500000000001	0.0797304
chr4	94258244	94258343	1998026	0	+	0.484848	(0.476,0.515]	chr4	199451	42	INTRON	INTRON	SMARCAD1	ENSG00000163104.18	ENST00000359052.8:ENST00000457823.6:ENST00000354268.9:ENST00000510105.5:ENST00000394961.6:ENST00000509418.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	39	2	2.48527	2.716095	2.94692	0.03496	0.00794331	0.13747500000000001	0.0797304
chr7	73474572	73474672	3554616	0	-	0.49	(0.476,0.515]	chr7	330777	37	INTRON	INTRON	BAZ1B	ENSG00000009954.11	ENST00000339594.9:ENST00000404251.1	protein_coding	protein_coding	protein_coding	protein_coding	2	39	2	2.48527	2.716095	2.94692	0.03496	0.00794331	0.13747500000000001	0.0797304
chr12	110346562	110346654	5226775	0	+	0.380435	(0.378,0.408]	chr12	495321	2	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	ATP2A2	ENSG00000174437.18	ENST00000308664.10:ENST00000539276.7:ENST00000377685.9:ENST00000548169.2:ENST00000313432.5:ENST00000553144.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	25	337	2	2.0683	2.716075	3.36385	2.18737e-4	6.58092e-6	0.0129737	0.00194182
chr9	97985986	97986085	4173065	0	+	0.535354	(0.515,0.57]	chr9	380269	9	INTRON	INTRON	ANP32B	ENSG00000136938.9	ENST00000339399.5:ENST00000473205.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	182	2	2.47052	2.716005	2.96149	1.75303e-4	1.86225e-5	0.0115194	0.00351782
chr15	28669715	28669811	5988748	0	+	0.5	(0.476,0.515]	chr15	569388	10	INTRON	INTRON	HERC2P9	ENSG00000206149.11	ENST00000529624.5:ENST00000530420.5:ENST00000528584.5	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript:transcribed_unprocessed_pseudogene	6	101	2	2.56291	2.715995	2.86908	0.00222582	4.03011e-4	0.0421176	0.0180338
chr15	37046437	37046537	6143521	0	-	0.36	(0.35,0.378]	chr15	584830	91	INTRON	INTRON	MEIS2	ENSG00000134138.20	ENST00000338564.9:ENST00000561208.6:ENST00000397624.7:ENST00000340545.9:ENST00000314177.12:ENST00000560570.5:ENST00000559085.5:ENST00000557796.6:ENST00000397620.6:ENST00000424352.6:ENST00000559561.5:ENST00000607277.5:ENST00000561163.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	43	2	2.6498	2.71596	2.78212	0.0210137	0.0168532	0.122348	0.103549
chr17	37313256	37313356	6762108	0	-	0.36	(0.35,0.378]	chr17	664944	136	INTRON	INTRON	ACACA	ENSG00000278540.5	ENST00000616317.5:ENST00000614428.4:ENST00000613146.4:ENST00000615229.4:ENST00000621960.1:ENST00000617548.1:ENST00000616352.4:ENST00000614789.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	43	2	2.6498	2.71596	2.78212	0.0210137	0.0168532	0.122348	0.103549
chr3	33810396	33810496	1394497	0	+	0.4	(0.378,0.408]	chr3	146021	105	INTRON	INTRON	PDCD6IP	ENSG00000170248.15	ENST00000457054.6:ENST00000648706.1:ENST00000435909.5:ENST00000430877.5:ENST00000413073.1:ENST00000307296.8:ENST00000477798.5:ENST00000498147.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	99	2	1.88781	2.715935	3.54406	0.00486383	0.00110718	0.0640618	0.0306086
chr11	47730190	47730290	4951026	0	-	0.27	[0,0.28]	chr11	464385	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	FNBP4	ENSG00000109920.13	ENST00000263773.10:ENST00000525792.5:ENST00000531394.1:ENST00000525316.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	127	2	1.88073	2.715925	3.55112	0.0092618	0.00205086	0.0855292	0.0409264
chr16	24105181	24105281	6326461	0	+	0.51	(0.476,0.515]	chr16	605737	105	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000498739.1:ENST00000482000.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	39	2	2.69967	2.71586	2.73205	0.0195838	0.0159328	0.109483	0.109464
chr2	157281187	157281286	896753	0	+	0.484848	(0.476,0.515]	chr2	99276	213	INTRON	INTRON	GALNT5	ENSG00000136542.9	ENST00000259056.5	protein_coding	protein_coding	protein_coding	protein_coding	2	39	2	2.69967	2.71586	2.73205	0.0195838	0.0159328	0.109483	0.109464
chr21	44941584	44941684	7417475	0	+	0.51	(0.476,0.515]	chr21	756215	10	INTRON	INTRON	SLX9	ENSG00000160256.13	ENST00000397826.7:ENST00000458015.1:ENST00000291634.11	protein_coding	protein_coding	protein_coding	protein_coding	2	39	2	2.69967	2.71586	2.73205	0.0195838	0.0159328	0.109483	0.109464
chr22	49565861	49565961	7601738	0	-	0.51	(0.476,0.515]	chr22	778566	1243	INTRON	INTRON	MIR3667HG	ENSG00000188511.13	ENST00000414287.5:ENST00000416411.1	lncRNA	lncRNA	lncRNA	lncRNA	2	39	2	2.69967	2.71586	2.73205	0.0195838	0.0159328	0.109483	0.109464
chr7	72901489	72901588	3330013	0	+	0.515152	(0.476,0.515]	chr7	309565	100	INTRON	INTRON	POM121	ENSG00000196313.13	ENST00000627934.3:ENST00000395270.5	protein_coding	protein_coding	protein_coding	protein_coding	2	39	2	2.69967	2.71586	2.73205	0.0195838	0.0159328	0.109483	0.109464
chr8	115488589	115488689	4029852	0	-	0.49	(0.476,0.515]	chr8	367945	698	INTRON	INTRON	TRPS1	ENSG00000104447.13	ENST00000395715.8:ENST00000640765.1:ENST00000220888.9:ENST00000519076.5:ENST00000520276.5:ENST00000518018.1	protein_coding	protein_coding	protein_coding	protein_coding	2	39	2	2.69967	2.71586	2.73205	0.0195838	0.0159328	0.109483	0.109464
chr7	30615395	30615495	3301652	0	+	0.23	[0,0.28]	chr7	306572	1	SS3_PROX	SS3_PROX:INTRON	GARS1	ENSG00000106105.15	ENST00000675051.1:ENST00000470392.2:ENST00000674643.1:ENST00000675529.1:ENST00000674807.1:ENST00000675810.1:ENST00000676088.1:ENST00000674815.1:ENST00000676403.1:ENST00000485784.2:ENST00000676210.1:ENST00000478124.6:ENST00000389266.8:ENST00000675693.1:ENST00000676259.1:ENST00000675651.1:ENST00000674616.1:ENST00000674737.1:ENST00000675859.1:ENST00000676140.1:ENST00000674969.1:ENST00000676164.1:ENST00000675886.1:ENST00000444666.6:ENST00000675587.1:ENST00000674851.1:ENST00000675863.1:ENST00000674734.1:ENST00000484093.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	57	2	2.20927	2.7157850000000003	3.2223	0.0794763	0.00422777	0.19979	0.0595466
chr1	19166621	19166721	386365	0	-	0.47	(0.44,0.476]	chr1	45999	2	SS5_PROX	SS5_PROX:INTRON	UBR4	ENSG00000127481.15	ENST00000375254.8:ENST00000417040.1:ENST00000419533.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	126	2	2.10962	2.7157150000000003	3.32181	0.00161834	2.46145e-4	0.0369252	0.0144887
chrX	123612212	123612310	7877803	0	-	0.367347	(0.35,0.378]	chrX	802406	3	INTRON	INTRON	THOC2	ENSG00000125676.20	ENST00000448128.5:ENST00000245838.13:ENST00000441692.5:ENST00000492203.1:ENST00000497887.5:ENST00000618150.4:ENST00000432353.5:ENST00000455053.5:ENST00000355725.8:ENST00000416618.5:ENST00000491737.5:ENST00000464992.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	79	2	2.21686	2.71571	3.21456	0.00420814	0.00414535	0.0589266	0.0572185
chr1	29052903	29053003	60353	0	+	0.4	(0.378,0.408]	chr1	7706	4	SS3_PROX	SS3_PROX:INTRON	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000647918.1:ENST00000646800.1:ENST00000644342.1:ENST00000646189.1:ENST00000482464.6:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000646260.1:ENST00000373798.5:ENST00000644600.1:ENST00000649674.1:ENST00000643173.1:ENST00000343067.9:ENST00000644780.1:ENST00000650265.1:ENST00000648181.1:ENST00000643604.1:ENST00000648891.1:ENST00000373797.2:ENST00000349460.9:ENST00000645184.1:ENST00000645111.1:ENST00000643302.1:ENST00000645999.1:ENST00000642643.1:ENST00000636666.1:ENST00000644848.1:ENST00000644470.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	107	2	1.88734	2.7157	3.54406	0.00371027	0.00110718	0.0561833	0.0306086
chr1	206652960	206653060	301818	0	+	0.35	(0.32,0.35]	chr1	34682	41	UTR3	UTR3:EXON_MRNA:INTRON	DYRK3	ENSG00000143479.18	ENST00000367109.8:ENST00000489878.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	225	2	2.40316	2.71566	3.02816	5.64362e-4	7.38256e-5	0.021937	0.00715612
chr6	20439456	20439556	2827824	0	+	0.35	(0.32,0.35]	chr6	265580	1	SS3_PROX	SS3_PROX:INTRON	E2F3:E2F3-IT1	ENSG00000112242.16:ENSG00000224707.1	ENST00000346618.8:ENST00000535432.2:ENST00000433182.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	6	113	2	2.45752	2.715655	2.97379	0.00164543	0.00149527	0.0369207	0.0356978
chr5	154943055	154943154	2527892	0	+	0.232323	[0,0.28]	chr5	241786	14	INTRON	INTRON	MRPL22	ENSG00000082515.18	ENST00000523037.6:ENST00000265229.12:ENST00000439747.7:ENST00000522038.5:ENST00000519059.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	93	2	1.59412	2.715635	3.83715	0.0729426	3.63888e-4	0.189278	0.0170637
chr2	9421682	9421781	1063764	0	-	0.363636	(0.35,0.378]	chr2	113430	12	INTRON	INTRON	ITGB1BP1	ENSG00000119185.13	ENST00000355346.9:ENST00000360635.7:ENST00000238091.8:ENST00000483795.5:ENST00000490426.5:ENST00000497031.5:ENST00000464228.5:ENST00000359712.7:ENST00000488451.5:ENST00000456913.6:ENST00000482798.5:ENST00000463190.1:ENST00000494563.5:ENST00000467606.5:ENST00000484735.5:ENST00000460001.5:ENST00000497105.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	70	2	2.06612	2.71563	3.36514	0.0164908	0.00173699	0.102419	0.03851
chr8	26314607	26314707	3716327	0	+	0.38	(0.378,0.408]	chr8	345372	96	INTRON	INTRON	PPP2R2A	ENSG00000221914.11	ENST00000380737.8:ENST00000520329.5:ENST00000518254.5:ENST00000524169.5:ENST00000518397.5:ENST00000522535.5:ENST00000665949.1:ENST00000522150.5:ENST00000523473.5:ENST00000521095.5:ENST00000660435.1:ENST00000523925.5:ENST00000524099.5:ENST00000315985.7:ENST00000519636.5:ENST00000522482.5:ENST00000521557.5:ENST00000519439.5:ENST00000521484.5:ENST00000523964.5:ENST00000667651.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	60	2	2.30961	2.715555	3.1215	0.055088	4.84777e-4	0.165463	0.0199443
chr19	58488429	58488529	7218178	0	-	0.35	(0.32,0.35]	chr19	733342	44	INTRON	INTRON	SLC27A5	ENSG00000083807.10	ENST00000595851.5	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	3	63	2	2.07985	2.7155050000000003	3.35116	0.0303092	0.00283808	0.143025	0.0473151
chr2	47785174	47785273	777058	0	+	0.383838	(0.378,0.408]	chr2	87411	3	INTRON	INTRON	MSH6	ENSG00000116062.18	ENST00000652107.1:ENST00000445503.5:ENST00000614496.4:ENST00000456246.1:ENST00000234420.11:ENST00000673922.1:ENST00000673637.1:ENST00000540021.6:ENST00000455383.5:ENST00000538136.1:ENST00000420813.5:ENST00000411819.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	95	2	1.29896	2.71549	4.13202	0.0575113	7.35047e-5	0.187655	0.00767614
chr11	62796841	62796941	4961341	0	-	0.48	(0.476,0.515]	chr11	466901	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NXF1	ENSG00000162231.14	ENST00000531709.6:ENST00000294172.7:ENST00000532297.5:ENST00000533048.5:ENST00000530875.5:ENST00000531872.5:ENST00000531579.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	52	2	2.43242	2.71547	2.99852	0.0091895	0.0077575	0.0855292	0.0757402
chr15	44537727	44537827	6015392	0	+	0.51	(0.476,0.515]	chr15	573007	3	SS5_PROX	SS5_PROX:INTRON	EIF3J	ENSG00000104131.13	ENST00000424492.7:ENST00000261868.10:ENST00000535391.5	protein_coding	protein_coding	protein_coding	protein_coding	3	52	2	2.43242	2.71547	2.99852	0.0091895	0.0077575	0.0855292	0.0757402
chr11	28115194	28115294	4752222	0	+	0.28	[0,0.28]	chr11	440072	12	INTRON	INTRON	METTL15	ENSG00000169519.21	ENST00000406787.7:ENST00000403099.5:ENST00000451385.6:ENST00000407364.8:ENST00000532947.2:ENST00000634627.1:ENST00000634973.1:ENST00000303459.10:ENST00000634721.1:ENST00000634762.1:ENST00000437814.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	92	2	1.95669	2.71546	3.47423	0.0237518	0.00268371	0.129075	0.0464781
chr2	111831734	111831834	1214338	0	-	0.51	(0.476,0.515]	chr2	129129	3	SS3_PROX	SS3_PROX:INTRON	ANAPC1	ENSG00000153107.13	ENST00000427997.5:ENST00000341068.8	protein_coding	protein_coding	protein_coding	protein_coding	3	56	2	2.69886	2.715455	2.73205	0.0159328	0.00385209	0.109464	0.0542786
chr12	56638843	56638923	5335733	0	-	0.425	(0.408,0.44]	chr12	510109	4	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ATP5F1B	ENSG00000110955.9	ENST00000262030.8:ENST00000548474.2:ENST00000551182.1:ENST00000547808.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	85	2	2.57365	2.71544	2.85723	0.00211413	0.00172241	0.0415897	0.0383099
chr1	21719241	21719340	396207	0	-	0.323232	(0.32,0.35]	chr1	47259	34	INTRON	INTRON	USP48	ENSG00000090686.16	ENST00000400301.5:ENST00000308271.14:ENST00000374732.7:ENST00000529637.5:ENST00000471752.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	74	2	2.43956	2.715405	2.99125	0.00958447	0.00352597	0.0820838	0.0546236
chr19	58247516	58247611	7106716	0	+	0.484211	(0.476,0.515]	chr19	713337	3	EXON_LNCRNA	EXON_LNCRNA:INTRON	ZNF544	ENSG00000198131.15	ENST00000599227.5:ENST00000687789.1:ENST00000594384.5:ENST00000652201.1:ENST00000596825.5:ENST00000596929.5:ENST00000596677.5:ENST00000600220.5:ENST00000600044.5:ENST00000596652.5:ENST00000599953.1:ENST00000598880.5:ENST00000600775.5:ENST00000595981.5:ENST00000627781.2:ENST00000269829.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	84	2	2.5238	2.71524	2.90668	0.00218334	0.00164243	0.0435144	0.0369207
chr22	19418543	19418642	7554293	0	-	0.525253	(0.515,0.57]	chr22	772317	74	INTRON	INTRON	HIRA:C22orf39	ENSG00000100084.14:ENSG00000242259.9	ENST00000263208.5:ENST00000340170.8:ENST00000509549.5:ENST00000464189.5:ENST00000452818.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	83	2	2.22907	2.71524	3.20141	0.00383939	2.65803e-4	0.0542786	0.0144243
chr2	171110457	171110556	1263593	0	-	0.313131	(0.28,0.32]	chr2	133913	188	INTRON	INTRON	TLK1	ENSG00000198586.14	ENST00000431350.7:ENST00000360843.7:ENST00000359766.7:ENST00000521943.5:ENST00000409443.6:ENST00000413010.5:ENST00000470340.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	82	2	1.56134	2.7151899999999998	3.86904	0.0740624	2.33993e-4	0.191153	0.0135358
chr3	6663026	6663126	1357874	0	+	0.42	(0.408,0.44]	chr3	142522	786	INTRON	INTRON	ENSG00000189229	ENSG00000189229.12	ENST00000433639.1:ENST00000655754.1:ENST00000658468.1:ENST00000669512.1:ENST00000667028.1:ENST00000655541.1:ENST00000668643.1:ENST00000671568.1:ENST00000671036.1:ENST00000669798.1:ENST00000655753.1:ENST00000655856.1:ENST00000658398.1:ENST00000661518.1:ENST00000661279.1:ENST00000655495.1:ENST00000663041.1:ENST00000659827.1:ENST00000667716.1:ENST00000668416.1:ENST00000658133.1:ENST00000342990.4:ENST00000660054.1:ENST00000671370.1	lncRNA	lncRNA	lncRNA	lncRNA	8	143	2	2.35743	2.71514	3.07285	0.00206746	7.41489e-5	0.0421756	0.00770735
chr3	186976384	186976483	1586636	0	+	0.333333	(0.32,0.35]	chr3	164336	9	INTRON	INTRON	ST6GAL1	ENSG00000073849.16	ENST00000676786.1:ENST00000169298.8:ENST00000457772.6:ENST00000455441.5:ENST00000427315.5:ENST00000677292.1:ENST00000458216.5:ENST00000430309.5:ENST00000417392.5:ENST00000438590.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	74	2	1.97654	2.7150749999999997	3.45361	0.0199113	0.00193809	0.120668	0.0399255
chr9	112257760	112257859	4317197	0	-	0.494949	(0.476,0.515]	chr9	397054	46	INTRON	INTRON	PTBP3	ENSG00000119314.16	ENST00000334318.10:ENST00000458258.5:ENST00000374257.6:ENST00000374255.6:ENST00000343327.6	protein_coding	protein_coding	protein_coding	protein_coding	4	70	2	2.49941	2.714935	2.93046	0.00811651	0.00118985	0.0766625	0.031662
chr11	33159400	33159499	4940959	0	-	0.545455	(0.515,0.57]	chr11	462884	22	INTRON	INTRON	CSTF3	ENSG00000176102.13	ENST00000323959.9:ENST00000524827.6:ENST00000526480.1:ENST00000438862.6:ENST00000431742.2:ENST00000524556.1:ENST00000524775.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	35	2	2.46104	2.7145900000000003	2.96814	0.032841	0.00756432	0.145164	0.0749063
chr2	127856869	127856968	1226024	0	-	0.525253	(0.515,0.57]	chr2	130543	34	INTRON	INTRON	POLR2D	ENSG00000144231.11	ENST00000272645.9:ENST00000409955.1:ENST00000487079.1:ENST00000409698.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	35	2	2.46104	2.7145900000000003	2.96814	0.032841	0.00756432	0.145164	0.0749063
chr17	67194636	67194730	6825315	0	-	0.340426	(0.32,0.35]	chr17	674512	2	INTRON	INTRON	HELZ	ENSG00000198265.12	ENST00000358691.10:ENST00000579953.5:ENST00000580168.5:ENST00000417253.7:ENST00000580662.5	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:nonsense_mediated_decay:processed_transcript	5	102	2	2.42352	2.714555	3.00559	0.0122807	2.41032e-4	0.091087	0.0136674
chr2	171950281	171950381	918639	0	+	0.48	(0.476,0.515]	chr2	101189	31	INTRON	INTRON	HAT1	ENSG00000128708.13	ENST00000412731.5:ENST00000264108.5:ENST00000457761.6:ENST00000494601.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	52	2	2.48551	2.714505	2.9435	0.00929849	0.00756632	0.0817766	0.0773151
chr3	108053255	108053354	1768905	0	-	0.484848	(0.476,0.515]	chr3	178921	14	EXON_MRNA	EXON_MRNA:INTRON	CD47	ENSG00000196776.17	ENST00000361309.6:ENST00000355354.13:ENST00000471694.1:ENST00000517766.5:ENST00000398258.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	52	2	2.48551	2.714505	2.9435	0.00929849	0.00756632	0.0817766	0.0773151
chr19	37219175	37219275	7060195	0	+	0.44	(0.408,0.44]	chr19	704866	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	ZNF383	ENSG00000188283.12	ENST00000586068.5:ENST00000585441.5:ENST00000586658.1:ENST00000590503.5:ENST00000684119.1:ENST00000589413.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	76	2	2.33431	2.714455	3.0946	0.0129219	7.51561e-4	0.0990564	0.0251179
chr5	65929803	65929903	2370876	0	+	0.5	(0.476,0.515]	chr5	228472	26	INTRON	INTRON	ERBIN	ENSG00000112851.15	ENST00000380943.6:ENST00000507490.1:ENST00000416865.6:ENST00000380935.5:ENST00000284037.10:ENST00000380938.6:ENST00000511297.5:ENST00000506030.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	97	2	2.6224	2.714455	2.80651	0.00250121	5.5634e-4	0.0446195	0.0214853
chr11	66617822	66617908	4810807	0	+	0.5	(0.476,0.515]	chr11	447844	3	SS5_PROX	SS5_PROX:INTRON	RBM14-RBM4:RBM14	ENSG00000248643.5:ENSG00000239306.5	ENST00000412278.2:ENST00000393979.3:ENST00000511114.1:ENST00000310137.5:ENST00000409372.1:ENST00000421355.1:ENST00000443702.1:ENST00000500635.2:ENST00000409738.4:ENST00000460762.1:ENST00000461478.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	11	180	2	2.67091	2.714445	2.75798	1.70069e-4	1.21235e-4	0.0119761	0.0094154
chr2	176316517	176316616	925689	0	+	0.484848	(0.476,0.515]	chr2	101688	118	INTRON	INTRON	MTX2	ENSG00000128654.14	ENST00000420864.5:ENST00000249442.11:ENST00000423461.6:ENST00000443241.5:ENST00000452865.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	14	223	2	2.58912	2.7144199999999996	2.83972	7.06301e-5	6.4211e-5	0.00711194	0.00695342
chr18	46255410	46255509	6899902	0	+	0.313131	(0.28,0.32]	chr18	683638	12	INTRON	INTRON	C18orf25	ENSG00000152242.11	ENST00000615052.5:ENST00000619301.4	protein_coding	protein_coding	protein_coding	protein_coding	7	149	2	2.37433	2.7144	3.05447	0.00356769	2.20189e-4	0.0532113	0.0130241
chr17	30171265	30171362	6587943	0	+	0.319588	(0.28,0.32]	chr17	640598	20	INTRON	INTRON	NSRP1	ENSG00000126653.18	ENST00000540900.7:ENST00000612959.4:ENST00000247026.10:ENST00000577289.6:ENST00000584154.5:ENST00000394826.8:ENST00000475652.5:ENST00000584317.5:ENST00000585881.5:ENST00000467446.6:ENST00000580103.6:ENST00000581048.5:ENST00000588614.1:ENST00000589608.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	49	2	2.45545	2.71439	2.97333	0.0438092	0.00857834	0.14901	0.083729
chr5	131523717	131523817	2718050	0	-	0.32	(0.28,0.32]	chr5	255585	18	INTRON	INTRON	RAPGEF6	ENSG00000158987.22	ENST00000509018.6:ENST00000507093.5:ENST00000296859.10:ENST00000627212.2:ENST00000308008.10:ENST00000515170.5:ENST00000510071.5:ENST00000514179.5:ENST00000513227.5:ENST00000504575.5:ENST00000504039.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	49	2	2.45545	2.71439	2.97333	0.0438092	0.00857834	0.14901	0.083729
chr7	138461901	138462001	3434657	0	+	0.42	(0.408,0.44]	chr7	319959	2	INTRON	INTRON	TRIM24	ENSG00000122779.18	ENST00000343526.9:ENST00000415680.6:ENST00000497516.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	53	2	2.27464	2.71439	3.15414	0.0158016	0.00469847	0.109464	0.0600108
chr16	17957566	17957666	6452204	0	-	0.44	(0.408,0.44]	chr16	621943	240	INTRON	INTRON	ENSG00000259929	ENSG00000259929.5	ENST00000569048.5	lncRNA	lncRNA	lncRNA	lncRNA	5	94	2	2.49983	2.7143800000000002	2.92893	0.00713527	4.29493e-4	0.0756118	0.0190249
chr2	127307280	127307379	1222987	0	-	0.262626	[0,0.28]	chr2	130196	88	UTR3	UTR3:EXON_MRNA	MAP3K2	ENSG00000169967.17	ENST00000682094.1:ENST00000409947.5	protein_coding	protein_coding	protein_coding	protein_coding	3	76	2	2.20642	2.71436	3.2223	0.0280845	0.00422777	0.125065	0.0595466
chr7	152192515	152192614	3678811	0	-	0.333333	(0.32,0.35]	chr7	341494	43	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000360104.8:ENST00000262189.11:ENST00000683200.1:ENST00000682283.1:ENST00000473186.5:ENST00000679882.1:ENST00000680969.1:ENST00000681033.1:ENST00000682176.1:ENST00000683159.1:ENST00000679645.1:ENST00000681635.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	73	2	2.22655	2.7143550000000003	3.20216	0.00823133	0.00480708	0.0812969	0.0602209
chr1	204533518	204533618	297593	0	+	0.47	(0.44,0.476]	chr1	34289	3	INTRON	INTRON	MDM4	ENSG00000198625.14	ENST00000367183.7:ENST00000391947.6:ENST00000454264.6:ENST00000612738.4:ENST00000614459.4:ENST00000616250.4:ENST00000367182.8:ENST00000463049.5:ENST00000470908.5:ENST00000471783.1:ENST00000367180.5:ENST00000507825.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	17	212	2	1.80603	2.71432	3.62261	0.00186856	8.71795e-6	0.040016500000000003	0.00227467
chr17	40280589	40280687	6610088	0	+	0.346939	(0.32,0.35]	chr17	643778	25	UTR3	UTR3:EXON_MRNA	WIPF2	ENSG00000171475.14	ENST00000323571.9	protein_coding	protein_coding	protein_coding	protein_coding	4	73	2	2.18777	2.71432	3.24087	0.00951422	0.00420518	0.0863913	0.0572185
chr5	79644249	79644342	2399054	0	+	0.322581	(0.32,0.35]	chr5	231723	10	INTRON	INTRON	TENT2	ENSG00000164329.14	ENST00000423041.6:ENST00000504233.5:ENST00000453514.6:ENST00000428308.6:ENST00000296783.7	protein_coding	protein_coding	protein_coding	protein_coding	4	73	2	2.18777	2.71432	3.24087	0.00951422	0.00420518	0.0863913	0.0572185
chr1	28939158	28939258	59202	0	+	0.29	(0.28,0.32]	chr1	7621	240	INTRON	INTRON	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000647918.1:ENST00000646800.1:ENST00000644342.1:ENST00000646189.1:ENST00000482464.6:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000646260.1:ENST00000373798.5:ENST00000644600.1:ENST00000649674.1:ENST00000643173.1:ENST00000343067.9:ENST00000644780.1:ENST00000650265.1:ENST00000648181.1:ENST00000643604.1:ENST00000648891.1:ENST00000373797.2:ENST00000349460.9:ENST00000645184.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	49	2	2.62686	2.7142150000000003	2.80157	0.0289217	0.0147132	0.1274	0.106558
chr3	47436033	47436132	1682456	0	-	0.30303	(0.28,0.32]	chr3	171868	5	INTRON	INTRON	SCAP	ENSG00000114650.21	ENST00000265565.10:ENST00000441517.6:ENST00000320017.10:ENST00000648151.1:ENST00000416208.5:ENST00000416847.5:ENST00000495603.2:ENST00000420588.5:ENST00000485967.1:ENST00000448217.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	49	2	2.62686	2.7142150000000003	2.80157	0.0289217	0.0147132	0.1274	0.106558
chr7	158660002	158660101	3688326	0	-	0.616162	(0.57,1]	chr7	342172	12	INTRON	INTRON	NCAPG2	ENSG00000146918.20	ENST00000356309.8:ENST00000432615.5:ENST00000409423.5:ENST00000441982.5:ENST00000467785.5:ENST00000409339.3:ENST00000474940.5:ENST00000475918.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	14	115	2	2.71165	2.7142049999999998	2.71676	4.18295e-5	1.16185e-5	0.00549026	0.00251847
chr16	85609509	85609609	6415927	0	+	0.58	(0.57,1]	chr16	615470	528	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	7	62	2	2.64903	2.71403	2.77903	9.85026e-4	1.5244e-4	0.0288488	0.0112857
chr9	128653656	128653755	4358630	0	-	0.585859	(0.57,1]	chr9	400527	124	INTRON	INTRON	DYNC2I2	ENSG00000119333.12	ENST00000372715.7:ENST00000419989.2:ENST00000451652.5:ENST00000480613.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	62	2	2.64903	2.71403	2.77903	9.85026e-4	1.5244e-4	0.0288488	0.0112857
chr6	42783298	42783398	2866778	0	+	0.72	(0.57,1]	chr6	271294	8	INTRON	INTRON	BICRAL	ENSG00000112624.13	ENST00000614467.4:ENST00000314073.10	protein_coding	protein_coding	protein_coding	protein_coding	5	47	2	2.56996	2.71399	2.85802	0.00499145	3.01883e-4	0.0646039	0.0160895
chr1	155971556	155971655	565150	0	-	0.353535	(0.35,0.378]	chr1	67623	6	INTRON	INTRON	ARHGEF2	ENSG00000116584.22	ENST00000313695.11:ENST00000361247.9:ENST00000477754.2:ENST00000673475.1:ENST00000462460.6:ENST00000696600.1:ENST00000696601.1:ENST00000313667.8:ENST00000471589.5:ENST00000476273.1:ENST00000497907.5:ENST00000465079.1:ENST00000495070.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	77	2	2.4077	2.713985	3.02027	0.0122026	8.40802e-4	0.0910127	0.0263691
chr1	46362915	46363012	96904	0	+	0.309278	(0.28,0.32]	chr1	13026	12	UTR3	UTR3:EXON_MRNA	NSUN4	ENSG00000117481.11	ENST00000307089.7:ENST00000474844.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	91	2	1.93579	2.713885	3.49198	0.0139701	0.00195595	0.10247	0.0400756
chr17	28566982	28567081	6744311	0	-	0.373737	(0.35,0.378]	chr17	662325	27	INTRON	INTRON	PIGS	ENSG00000087111.21	ENST00000268758.13:ENST00000395346.6:ENST00000308360.8:ENST00000584080.5:ENST00000582721.5:ENST00000577594.5:ENST00000583631.1:ENST00000584413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	44	2	2.48657	2.7138400000000003	2.94111	0.032907	0.0104563	0.145164	0.0855102
chr3	154276552	154276649	1843031	0	-	0.360825	(0.35,0.378]	chr3	185347	1	EXON_MRNA	EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DHX36	ENSG00000174953.14	ENST00000496811.6:ENST00000308361.10:ENST00000495598.1:ENST00000329463.9:ENST00000477549.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	58	2	2.66547	2.713695	2.76192	0.0233639	0.00265021	0.118323	0.0474328
chr9	4849650	4849750	4095446	0	+	0.37	(0.35,0.378]	chr9	373211	1	SS5_PROX	SS5_PROX:INTRON	RCL1	ENSG00000120158.12	ENST00000381750.9:ENST00000442869.5:ENST00000381730.5:ENST00000381728.5:ENST00000448872.6	protein_coding	protein_coding	protein_coding	protein_coding	3	58	2	2.66547	2.713695	2.76192	0.0233639	0.00265021	0.118323	0.0474328
chrX	71412234	71412334	7678706	0	+	0.43	(0.408,0.44]	chrX	786269	37	INTRON	INTRON	TAF1	ENSG00000147133.17	ENST00000683202.1:ENST00000373790.9:ENST00000423759.6:ENST00000683782.1:ENST00000683668.1:ENST00000276072.9:ENST00000463163.5:ENST00000373775.8:ENST00000485087.6:ENST00000437147.8:ENST00000683358.1:ENST00000682124.1:ENST00000461764.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	14	128	2	1.29045	2.71366	4.13687	0.0237644	6.40544e-5	0.129075	0.00711194
chr22	19911316	19911376	7556011	0	-	0.583333	(0.57,1]	chr22	772523	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TXNRD2	ENSG00000184470.21	ENST00000400518.5:ENST00000542719.6:ENST00000494454.5:ENST00000474308.5:ENST00000400525.6:ENST00000400521.7:ENST00000400519.6:ENST00000635155.1:ENST00000491939.6:ENST00000334363.14:ENST00000475995.3:ENST00000484672.5:ENST00000471835.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	34	2	2.07956	2.7135350000000003	3.34751	0.013114	0.00122677	0.0998629	0.0320791
chr1	176194872	176194971	591593	0	-	0.434343	(0.408,0.44]	chr1	70984	98	INTRON	INTRON	COP1	ENSG00000143207.21	ENST00000367669.8:ENST00000367667.5:ENST00000649803.1:ENST00000308769.12:ENST00000498306.5:ENST00000491600.5:ENST00000474194.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	53	2	2.11447	2.71352	3.31257	0.0285207	0.00198621	0.12666	0.0411469
chr2	58184758	58184856	1126172	0	-	0.438776	(0.408,0.44]	chr2	120903	9	INTRON	INTRON	FANCL	ENSG00000115392.13	ENST00000696400.1:ENST00000403295.8:ENST00000696492.1:ENST00000427708.7:ENST00000696314.1:ENST00000696315.1:ENST00000696454.1:ENST00000696508.1:ENST00000696548.1:ENST00000696542.1:ENST00000696432.1:ENST00000696319.1:ENST00000403676.6:ENST00000696433.1:ENST00000696434.1:ENST00000696499.1:ENST00000696564.1:ENST00000402135.8:ENST00000696546.1:ENST00000233741.9:ENST00000696316.1:ENST00000696378.1:ENST00000696435.1:ENST00000696493.1:ENST00000696543.1:ENST00000696544.1:ENST00000696545.1:ENST00000696565.1:ENST00000696620.1:ENST00000696621.1:ENST00000696635.1:ENST00000696364.1:ENST00000696634.1:ENST00000696619.1:ENST00000696317.1:ENST00000696622.1:ENST00000696467.1:ENST00000696547.1:ENST00000449070.6:ENST00000696305.1:ENST00000417361.2:ENST00000696338.1:ENST00000696361.1:ENST00000696318.1:ENST00000696371.1:ENST00000696409.1:ENST00000696410.1:ENST00000696455.1:ENST00000696468.1:ENST00000696527.1:ENST00000696567.1:ENST00000696324.1:ENST00000696566.1:ENST00000696623.1:ENST00000446381.6:ENST00000696469.1:ENST00000696624.1:ENST00000696411.1:ENST00000696475.1:ENST00000470506.2:ENST00000696358.1:ENST00000696373.1:ENST00000696394.1:ENST00000696320.1:ENST00000696339.1:ENST00000696395.1:ENST00000696341.1:ENST00000696340.1:ENST00000696374.1:ENST00000696396.1:ENST00000696342.1:ENST00000696325.1:ENST00000696399.1:ENST00000696398.1:ENST00000696306.1:ENST00000696397.1:ENST00000696360.1:ENST00000696344.1:ENST00000696343.1:ENST00000696637.1:ENST00000696362.1:ENST00000696528.1:ENST00000696497.1:ENST00000696326.1:ENST00000696638.1:ENST00000696625.1:ENST00000696510.1:ENST00000696438.1:ENST00000696496.1:ENST00000696509.1:ENST00000696569.1:ENST00000696457.1:ENST00000696458.1:ENST00000696473.1:ENST00000696495.1:ENST00000696415.1:ENST00000696472.1:ENST00000696494.1:ENST00000696363.1:ENST00000696414.1:ENST00000696529.1:ENST00000696471.1:ENST00000696459.1:ENST00000696498.1:ENST00000696532.1:ENST00000696416.1:ENST00000696530.1:ENST00000696460.1:ENST00000696570.1:ENST00000696531.1:ENST00000696307.1:ENST00000696401.1:ENST00000696345.1:ENST00000696377.1:ENST00000696417.1:ENST00000696594.1:ENST00000696595.1:ENST00000696379.1:ENST00000696346.1:ENST00000696380.1:ENST00000696347.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	98	2	2.23639	2.71352	3.19065	0.00445002	3.2984e-4	0.0592079	0.0161352
chr5	140510971	140511068	2503955	0	+	0.43299	(0.408,0.44]	chr5	239293	4	INTRON	INTRON	ANKHD1	ENSG00000131503.21	ENST00000297183.10:ENST00000360839.7:ENST00000421134.5:ENST00000246149.10:ENST00000412116.5:ENST00000431508.5	protein_coding	protein_coding	protein_coding	protein_coding	6	98	2	2.23639	2.71352	3.19065	0.00445002	3.2984e-4	0.0592079	0.0161352
chr1	35944792	35944892	71281	0	+	0.47	(0.44,0.476]	chr1	9132	130	INTRON	INTRON	AGO3	ENSG00000126070.20	ENST00000324350.9:ENST00000397828.3:ENST00000634486.1:ENST00000373191.9:ENST00000246314.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	39	2	2.5364	2.713435	2.89047	0.0309324	0.00955699	0.13151	0.0863913
chr16	74300787	74300869	6389168	0	+	0.47561	(0.44,0.476]	chr16	614399	2	SS3_PROX	SS3_PROX:INTRON	PSMD7	ENSG00000103035.11	ENST00000219313.9:ENST00000568717.1:ENST00000567958.5:ENST00000568615.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	39	2	2.5364	2.713435	2.89047	0.0309324	0.00955699	0.13151	0.0863913
chr17	76401813	76401896	6842608	0	-	0.457831	(0.44,0.476]	chr17	676828	2	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	UBE2O	ENSG00000175931.13	ENST00000319380.12:ENST00000586409.5:ENST00000590658.1:ENST00000586505.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	39	2	2.5364	2.713435	2.89047	0.0309324	0.00955699	0.13151	0.0863913
chr22	46785889	46785989	7535417	0	+	0.45	(0.44,0.476]	chr22	770548	113	INTRON	INTRON	TBC1D22A	ENSG00000054611.14	ENST00000380995.5:ENST00000337137.9:ENST00000441936.5:ENST00000486163.5:ENST00000407381.7:ENST00000355704.7:ENST00000394449.6:ENST00000496139.5:ENST00000472791.5:ENST00000441162.5:ENST00000406733.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	39	2	2.5364	2.713435	2.89047	0.0309324	0.00955699	0.13151	0.0863913
chr2	177386272	177386372	1277088	0	-	0.33	(0.32,0.35]	chr2	134794	374	INTRON	INTRON	NFE2L2:ENSG00000213963	ENSG00000116044.16:ENSG00000213963.6	ENST00000464747.5:ENST00000397057.6:ENST00000456746.5:ENST00000447413.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	3	62	2	2.3471	2.713425	3.07975	0.0156413	0.00554235	0.101393	0.0674105
chr5	104154295	104154395	2441958	0	+	0.33	(0.32,0.35]	chr5	234410	490	INTRON	INTRON	LINC02163	ENSG00000251026.2	ENST00000662211.1:ENST00000666145.1	lncRNA	lncRNA	lncRNA	lncRNA	3	62	2	2.3471	2.713425	3.07975	0.0156413	0.00554235	0.101393	0.0674105
chr3	40310549	40310627	1401865	0	+	0.333333	(0.32,0.35]	chr3	147239	2	SS3_PROX	SS3_PROX:INTRON	EIF1B	ENSG00000114784.4	ENST00000232905.4:ENST00000462088.1:ENST00000488260.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	61	2	2.6297	2.713385	2.79707	0.0170923	0.00476699	0.104099	0.0636201
chr7	127827945	127828045	3404170	0	+	0.33	(0.32,0.35]	chr7	318140	200	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000468166.5:ENST00000465900.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	61	2	2.6297	2.713385	2.79707	0.0170923	0.00476699	0.104099	0.0636201
chr17	1559731	1559801	6701076	0	-	0.442857	(0.44,0.476]	chr17	655895	3	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	PITPNA	ENSG00000174238.16	ENST00000313486.12:ENST00000575288.5:ENST00000576722.5:ENST00000575895.5:ENST00000576761.5:ENST00000576010.6:ENST00000573231.1:ENST00000573056.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	39	2	2.60774	2.71335	2.81896	0.0255874	0.0120766	0.120269	0.0962311
chr5	72878963	72879063	2387763	0	+	0.45	(0.44,0.476]	chr5	230421	4	PRIMIRNA	PRIMIRNA:INTRON	TNPO1:MIR4804	ENSG00000083312.19:ENSG00000263593.1	ENST00000680533.1:ENST00000520850.5:ENST00000337273.10:ENST00000680025.1:ENST00000523768.5:ENST00000681711.1:ENST00000679378.1:ENST00000506351.6:ENST00000508762.5:ENST00000505082.1:ENST00000581683.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript:primary_miRNA	2	39	2	2.60774	2.71335	2.81896	0.0255874	0.0120766	0.120269	0.0962311
chr5	179830558	179830657	2561755	0	+	0.606061	(0.57,1]	chr5	245049	50	INTRON	INTRON	SQSTM1	ENSG00000161011.20	ENST00000389805.9:ENST00000510187.5:ENST00000360718.5:ENST00000466342.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	58	2	1.7127	2.71333	3.71396	0.0180739	7.10427e-6	0.107124	0.00188881
chr6	89663899	89663986	3160371	0	-	0.402299	(0.378,0.408]	chr6	294437	6	INTRON	INTRON	MDN1	ENSG00000112159.12	ENST00000369393.8:ENST00000629399.2	protein_coding	protein_coding	protein_coding	protein_coding	5	88	2	2.30499	2.713245	3.1215	0.00683258	4.84777e-4	0.0713163	0.0199443
chr19	2196936	2197034	6996508	0	+	0.602041	(0.57,1]	chr19	693461	20	INTRON	INTRON	DOT1L	ENSG00000104885.19	ENST00000398665.8:ENST00000686010.1:ENST00000452696.5	protein_coding	protein_coding	protein_coding	protein_coding	3	29	2	2.50742	2.7131550000000004	2.91889	0.00719009	0.00631173	0.0756118	0.0687526
chr19	10765200	10765298	7014244	0	+	0.602041	(0.57,1]	chr19	696935	12	INTRON	INTRON	DNM2	ENSG00000079805.19	ENST00000683738.1:ENST00000682285.1:ENST00000682524.1:ENST00000355667.11:ENST00000389253.9:ENST00000585892.5:ENST00000359692.10:ENST00000408974.8:ENST00000586939.5:ENST00000591266.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	29	2	2.50742	2.7131550000000004	2.91889	0.00719009	0.00631173	0.0756118	0.0687526
chr2	235562229	235562329	1042019	0	+	0.37	(0.35,0.378]	chr2	111222	373	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1:ENST00000402604.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	58	2	2.17079	2.71314	3.25549	0.0225978	0.00363602	0.124921	0.0535085
chr10	17661942	17662041	4399444	0	+	0.313131	(0.28,0.32]	chr10	406156	10	INTRON	INTRON	STAM	ENSG00000136738.15	ENST00000377524.8:ENST00000377500.1:ENST00000445846.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	69	2	2.51488	2.7130599999999996	2.91124	0.0380957	0.00165124	0.141678	0.0375241
chrX	47208561	47208658	7655732	0	+	0.268041	[0,0.28]	chrX	783262	1	UTR5	UTR5:EXON_MRNA:INTRON	UBA1	ENSG00000130985.17	ENST00000377351.8:ENST00000335972.11:ENST00000377269.3	protein_coding	protein_coding	protein_coding	protein_coding	3	81	2	2.38757	2.713035	3.0385	0.0552962	0.00116412	0.165463	0.0314524
chr5	146451777	146451876	2515543	0	+	0.424242	(0.408,0.44]	chr5	240283	40	INTRON	INTRON	TCERG1	ENSG00000113649.13	ENST00000507175.5:ENST00000296702.9:ENST00000679501.2:ENST00000394421.7:ENST00000549332.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	71	2	2.68622	2.712815	2.73941	0.00418848	0.002744	0.0572071	0.0484022
chr5	54277695	54277795	2620589	0	-	0.45	(0.44,0.476]	chr5	248860	1054	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2:ENST00000505630.5:ENST00000505383.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	53	2	1.96602	2.712795	3.45957	0.0426807	0.00106385	0.148082	0.0300133
chr4	173369535	173369631	2298459	0	-	0.520833	(0.515,0.57]	chr4	222410	18	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	SAP30-DT	ENSG00000272870.4	ENST00000658397.1:ENST00000666010.2:ENST00000609153.2:ENST00000608794.1:ENST00000609900.1:ENST00000608892.1	lncRNA	lncRNA	lncRNA	lncRNA	3	46	2	1.9459	2.712745	3.47959	0.0429089	8.38022e-4	0.148082	0.0263691
chr16	31181214	31181312	6340563	0	+	0.571429	(0.57,1]	chr16	608317	6	INTRON	INTRON	FUS	ENSG00000089280.19	ENST00000566605.5:ENST00000254108.12:ENST00000380244.7:ENST00000487045.6:ENST00000487509.6:ENST00000568685.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	28	256	2	2.05001	2.71274	3.37547	2.31708e-4	1.54437e-9	0.0134479	7.19873e-6
chr3	197650042	197650135	1904053	0	-	0.473118	(0.44,0.476]	chr3	190775	9	EXON_LNCRNA	EXON_LNCRNA	ENSG00000286909	ENSG00000286909.1	ENST00000667447.1	lncRNA	lncRNA	lncRNA	lncRNA	9	149	2	2.62165	2.712725	2.8038	3.987e-4	2.03038e-4	0.0185763	0.0124395
chr2	235502442	235502542	1041419	0	+	0.49	(0.476,0.515]	chr2	111217	72	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	63	2	1.96833	2.71272	3.45711	0.0195007	0.00140905	0.119967	0.0340865
chr12	56682497	56682596	5336023	0	-	0.484848	(0.476,0.515]	chr12	510192	91	INTRON	INTRON	PTGES3	ENSG00000110958.16	ENST00000537473.2:ENST00000614328.4:ENST00000262033.11:ENST00000414274.7:ENST00000436399.6:ENST00000448157.6:ENST00000456859.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	117	2	1.9314	2.712605	3.49381	0.00643736	6.39656e-5	0.0697513	0.00661396
chr6	124963926	124964025	2951486	0	+	0.373737	(0.35,0.378]	chr6	277668	1	INTRON	INTRON	RNF217	ENSG00000146373.17	ENST00000521654.7:ENST00000560949.5:ENST00000519971.1:ENST00000519565.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	10	117	2	1.69295	2.7126	3.73225	0.00763358	5.46487e-4	0.0777257	0.0215463
chrX	24754373	24754473	7632320	0	+	0.51	(0.476,0.515]	chrX	781725	50	INTRON	INTRON	POLA1	ENSG00000101868.13	ENST00000672178.1:ENST00000379068.8:ENST00000379059.7:ENST00000611764.2:ENST00000480125.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	89	2	1.68084	2.712585	3.74433	0.0172143	2.85053e-4	0.104099	0.0150568
chr22	49651027	49651127	7602598	0	-	0.58	(0.57,1]	chr22	778594	236	INTRON	INTRON	MIR3667HG	ENSG00000188511.13	ENST00000414287.5:ENST00000416411.1:ENST00000689875.1:ENST00000400023.5:ENST00000405854.5	lncRNA	lncRNA	lncRNA	lncRNA	16	116	2	2.19905	2.7124800000000002	3.22591	1.26171e-4	6.62693e-6	0.00960733	0.00194394
chr1	65330421	65330521	136299	0	+	0.37	(0.35,0.378]	chr1	15352	201	INTRON	INTRON	DNAJC6	ENSG00000116675.16	ENST00000463018.5:ENST00000494710.6:ENST00000263441.11:ENST00000395325.7:ENST00000483402.1:ENST00000371069.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	111	2	2.59391	2.712465	2.83102	0.00229337	5.35542e-4	0.0428247	0.0209215
chr11	57785041	57785141	4793364	0	+	0.41	(0.408,0.44]	chr11	443721	30	INTRON	INTRON	ENSG00000288534:CTNND1	ENSG00000288534.1:ENSG00000198561.16	ENST00000673781.1:ENST00000673810.1:ENST00000674116.1:ENST00000674060.1:ENST00000524630.5:ENST00000529919.5:ENST00000533189.1:ENST00000682741.1:ENST00000358694.10:ENST00000361332.8:ENST00000361391.10:ENST00000361796.9:ENST00000415361.6:ENST00000426142.6:ENST00000428599.6:ENST00000525902.5:ENST00000526357.5:ENST00000526772.5:ENST00000527467.5:ENST00000528232.5:ENST00000528621.5:ENST00000529526.5:ENST00000529873.5:ENST00000529986.5:ENST00000530094.5:ENST00000530748.5:ENST00000531014.5:ENST00000532245.5:ENST00000532463.5:ENST00000532649.5:ENST00000532787.5:ENST00000532844.5:ENST00000533667.5:ENST00000534579.5:ENST00000399050.10:ENST00000526938.5:ENST00000531007.2:ENST00000674015.1:ENST00000673826.1:ENST00000673683.1:ENST00000674106.1:ENST00000530068.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	119	2	2.06888	2.7123850000000003	3.35589	0.00864911	2.36834e-5	0.0787025	0.00380885
chr16	10418385	10418484	6286602	0	+	0.484848	(0.476,0.515]	chr16	601967	34	INTRON	INTRON	ATF7IP2	ENSG00000166669.14	ENST00000564797.5:ENST00000396559.5:ENST00000396560.6:ENST00000562527.5:ENST00000561932.5:ENST00000543967.5:ENST00000562102.6:ENST00000535850.5:ENST00000569900.5:ENST00000569939.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	53	2	2.69967	2.71237	2.72507	0.0195838	0.0029369	0.109483	0.0496505
chr8	52711082	52711182	3951075	0	-	0.37	(0.35,0.378]	chr8	362390	238	INTRON	INTRON	RB1CC1	ENSG00000023287.13	ENST00000025008.10:ENST00000435644.6:ENST00000521611.1:ENST00000518710.5:ENST00000517963.1:ENST00000518211.1:ENST00000518468.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	127	2	2.34722	2.7123150000000003	3.07741	0.00312988	1.44425e-4	0.0499376	0.010445
chr22	19117734	19117834	7551968	0	-	0.28	[0,0.28]	chr22	771903	279	INTRON	INTRON	DGCR2	ENSG00000070413.20	ENST00000537045.5:ENST00000545799.5:ENST00000263196.12:ENST00000389262.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	75	2	2.41169	2.71228	3.01287	0.0122872	0.0115634	0.0970106	0.0889104
chr7	50789459	50789559	3532649	0	-	0.49	(0.476,0.515]	chr7	329547	67	INTRON	INTRON	GRB10	ENSG00000106070.20	ENST00000335866.7:ENST00000644769.1:ENST00000644879.1:ENST00000402497.6:ENST00000645075.2:ENST00000439044.7:ENST00000644716.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	40	2	2.23335	2.71227	3.19119	0.0634557	0.00325748	0.177047	0.0524329
chr8	29053365	29053461	3726505	0	+	0.364583	(0.35,0.378]	chr8	346334	2	SS3_PROX	SS3_PROX:INTRON	HMBOX1	ENSG00000147421.18	ENST00000522468.1:ENST00000561377.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	10	168	2	1.74482	2.71224	3.67966	0.0118194	3.56547e-6	0.0898298	0.0012287
chr8	129503655	129503755	4060318	0	-	0.36	(0.35,0.378]	chr8	369642	85	INTRON	INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1:ENST00000676273.1:ENST00000667643.1:ENST00000668791.1:ENST00000663716.1:ENST00000663572.1:ENST00000676148.1:ENST00000667962.1:ENST00000674877.1:ENST00000675316.1:ENST00000674656.1:ENST00000446592.7:ENST00000667341.1:ENST00000675186.1:ENST00000652971.1:ENST00000661447.1:ENST00000674863.1:ENST00000675498.1:ENST00000675527.1:ENST00000676108.1:ENST00000657647.1:ENST00000675589.1:ENST00000675913.1:ENST00000675109.1:ENST00000671632.1:ENST00000671311.1:ENST00000676099.1:ENST00000660652.1:ENST00000675522.1:ENST00000675183.1:ENST00000658861.1:ENST00000663991.1:ENST00000675044.1:ENST00000675435.1:ENST00000674639.1:ENST00000676069.1:ENST00000675532.1:ENST00000674762.1:ENST00000523151.6:ENST00000675948.1:ENST00000665364.1:ENST00000657251.1:ENST00000675166.1:ENST00000674883.1:ENST00000675867.1:ENST00000674580.1:ENST00000675393.1:ENST00000520048.1:ENST00000674906.1:ENST00000676030.1:ENST00000670588.1:ENST00000675072.1:ENST00000664936.1:ENST00000652914.1:ENST00000657069.1	lncRNA	lncRNA	lncRNA	lncRNA	12	212	2	2.47946	2.7122349999999997	2.94501	3.12758e-4	1.03163e-4	0.0162569	0.00861114
chr1	207777941	207778040	305170	0	+	0.333333	(0.32,0.35]	chr1	35129	18	INTRON	INTRON	CD46	ENSG00000117335.21	ENST00000695779.1:ENST00000695777.1:ENST00000695778.1:ENST00000496723.2:ENST00000695782.1:ENST00000695781.1:ENST00000695780.1:ENST00000636114.2:ENST00000367042.6:ENST00000322875.8:ENST00000322918.9:ENST00000354848.5:ENST00000357714.5:ENST00000358170.6:ENST00000367041.5:ENST00000367047.5:ENST00000695783.1:ENST00000695784.1:ENST00000469535.5:ENST00000360212.6:ENST00000480003.5:ENST00000695786.1:ENST00000490278.2:ENST00000488596.5:ENST00000471987.1:ENST00000462968.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	85	2	1.77253	2.7122	3.65187	0.0271031	5.49434e-4	0.123904	0.0213049
chr1	227304204	227304304	651578	0	-	0.51	(0.476,0.515]	chr1	77110	391	INTRON	INTRON	CDC42BPA	ENSG00000143776.20	ENST00000366766.8:ENST00000366769.7:ENST00000334218.9:ENST00000366767.7:ENST00000366764.8:ENST00000478573.6:ENST00000682551.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	14	227	2	2.64672	2.712135	2.77755	7.54672e-5	5.71735e-5	0.00728361	0.00658247
chr1	150365718	150365818	221712	0	+	0.52	(0.515,0.57]	chr1	25051	4	INTRON	INTRON	RPRD2	ENSG00000163125.16	ENST00000492220.1:ENST00000369068.5:ENST00000401000.8:ENST00000369067.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	87	2	2.4386	2.712115	2.98563	0.00326739	1.77567e-4	0.0508595	0.0116289
chr13	95729950	95730050	5517727	0	+	0.42	(0.408,0.44]	chr13	527661	43	INTRON	INTRON	DNAJC3	ENSG00000102580.15	ENST00000602402.6:ENST00000376795.6	protein_coding	protein_coding	protein_coding	protein_coding	2	40	2	2.27698	2.71202	3.14706	0.0583528	0.00382411	0.167723	0.0562562
chr1	65435510	65435609	137339	0	+	0.484848	(0.476,0.515]	chr1	15494	37	UTR3	UTR3:EXON_MRNA:INTRON	LEPR:LEPROT	ENSG00000116678.20:ENSG00000213625.9	ENST00000371060.7:ENST00000371059.7:ENST00000349533.11:ENST00000371065.9:ENST00000613538.1	protein_coding	protein_coding	protein_coding	protein_coding	18	291	2	2.60326	2.712015	2.82077	4.44661e-5	2.0467e-5	0.00540751	0.00367697
chr16	29498823	29498923	6470546	0	-	0.52	(0.515,0.57]	chr16	625124	1	SS5_PROX	SS5_PROX:INTRON	ENSG00000288632:NPIPB12	ENSG00000288632.1:ENSG00000169203.17	ENST00000675579.1:ENST00000550665.5:ENST00000551448.5:ENST00000617311.1:ENST00000547235.5:ENST00000550690.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:nonsense_mediated_decay:lncRNA	3	45	2	2.45585	2.711995	2.96814	0.00797827	0.00756432	0.0798772	0.0749063
chr11	14290385	14290484	4916975	0	-	0.494949	(0.476,0.515]	chr11	460774	83	INTRON	INTRON	RRAS2	ENSG00000133818.14	ENST00000256196.9:ENST00000537760.5:ENST00000414023.6:ENST00000529237.5:ENST00000534746.5:ENST00000526063.5:ENST00000532814.5:ENST00000531807.5:ENST00000532950.5:ENST00000531421.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	53	2	1.92984	2.711975	3.49411	0.0466474	9.23453e-4	0.151522	0.0278392
chr4	174284737	174284835	2082587	0	+	0.306122	(0.28,0.32]	chr4	205799	2	INTRON	INTRON	CEP44	ENSG00000164118.13	ENST00000505124.5:ENST00000457424.6:ENST00000396791.7:ENST00000503780.6:ENST00000514712.5:ENST00000515299.5:ENST00000503053.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	67	2	2.67975	2.711965	2.74418	0.0252505	0.00328589	0.12011	0.0527031
chr20	3975199	3975299	7309004	0	-	0.3	(0.28,0.32]	chr20	744300	4	INTRON	INTRON	RNF24	ENSG00000101236.17	ENST00000336095.10:ENST00000358395.11:ENST00000545616.2	protein_coding	protein_coding	protein_coding	protein_coding	3	67	2	2.29708	2.71194	3.1268	0.0195087	0.00508956	0.109483	0.0646039
chr10	69199497	69199597	4445270	0	+	0.49	(0.476,0.515]	chr10	410131	3	SS5_PROX	SS5_PROX:INTRON	SUPV3L1	ENSG00000156502.14	ENST00000359655.9:ENST00000422378.1	protein_coding	protein_coding	protein_coding	protein_coding	5	87	2	2.69854	2.711805	2.72507	0.0029369	0.00121528	0.0496505	0.031919
chr18	12339800	12339900	6946749	0	-	0.45	(0.44,0.476]	chr18	687185	2	SS5_PROX	SS5_PROX:INTRON	AFG3L2	ENSG00000141385.12	ENST00000269143.8:ENST00000691970.1:ENST00000691179.1:ENST00000687337.1:ENST00000692988.1:ENST00000692497.1:ENST00000688199.1:ENST00000687477.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	41	2	2.39604	2.7117750000000003	3.02751	0.0404291	0.00715968	0.161534	0.0723634
chr17	82916218	82916317	6695893	0	+	0.444444	(0.44,0.476]	chr17	655036	22	INTRON	INTRON	TBCD	ENSG00000141556.22	ENST00000682479.1:ENST00000682722.1:ENST00000684464.1:ENST00000684544.1:ENST00000681983.1:ENST00000684361.1:ENST00000683184.1:ENST00000683282.1:ENST00000684408.1:ENST00000355528.9:ENST00000683444.1:ENST00000684776.1:ENST00000683041.1:ENST00000684760.1:ENST00000684349.1:ENST00000682213.1:ENST00000539345.6:ENST00000684000.1:ENST00000684188.1:ENST00000684429.1:ENST00000682610.1:ENST00000683821.1:ENST00000682654.1:ENST00000576160.6:ENST00000571712.5:ENST00000576996.5:ENST00000683584.1:ENST00000682099.1:ENST00000684559.1:ENST00000576760.5:ENST00000683839.1:ENST00000574975.5:ENST00000572953.5:ENST00000571796.5:ENST00000682315.1:ENST00000574422.1:ENST00000576677.6:ENST00000571618.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	129	2	2.28605	2.711755	3.13746	0.00206758	8.94727e-5	0.0411504	0.0079464
chr1	85256751	85256850	497307	0	-	0.414141	(0.408,0.44]	chr1	58949	37	INTRON	INTRON	C1orf52	ENSG00000162642.14	ENST00000294661.8:ENST00000471115.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	53	2	2.05947	2.711625	3.36378	0.0333232	0.0016048	0.134145	0.0367961
chr8	98691581	98691681	3998815	0	-	0.45	(0.44,0.476]	chr8	366070	400	INTRON	INTRON	STK3	ENSG00000104375.17	ENST00000617590.1:ENST00000419617.7:ENST00000523601.5:ENST00000518165.5:ENST00000521649.5:ENST00000424861.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	65	2	1.55662	2.71161	3.8666	0.0688347	1.50865e-4	0.184298	0.0106137
chr17	81589104	81589204	6849112	0	-	0.4	(0.378,0.408]	chr17	678166	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	NPLOC4	ENSG00000182446.14	ENST00000331134.11:ENST00000374747.9:ENST00000574897.5:ENST00000572351.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	41	2	2.30961	2.711605	3.1136	0.055088	0.00443339	0.165463	0.061054
chr11	3708053	3708153	4894257	0	-	0.41	(0.408,0.44]	chr11	458814	4	INTRON	INTRON	NUP98	ENSG00000110713.17	ENST00000359171.8:ENST00000324932.12:ENST00000650171.1:ENST00000355260.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	85	2	2.5027	2.711515	2.92033	0.00238178	0.00162151	0.0449397	0.0367655
chr6	147683529	147683629	2990831	0	+	0.41	(0.408,0.44]	chr6	280163	70	INTRON	INTRON	ENSG00000227681	ENSG00000227681.5	ENST00000427015.1:ENST00000432506.5:ENST00000442094.5	lncRNA	lncRNA	lncRNA	lncRNA	5	85	2	2.5027	2.711515	2.92033	0.00238178	0.00162151	0.0449397	0.0367655
chr10	86487031	86487131	4659015	0	-	0.49	(0.476,0.515]	chr10	429282	127	INTRON	INTRON	WAPL	ENSG00000062650.20	ENST00000298767.10	protein_coding	protein_coding	protein_coding	protein_coding	2	40	2	2.47949	2.711495	2.9435	0.0326974	0.00929849	0.145164	0.0817766
chr12	122495758	122495856	5441941	0	-	0.5	(0.476,0.515]	chr12	520516	26	INTRON	INTRON	ZCCHC8	ENSG00000033030.15	ENST00000672018.1:ENST00000633063.3:ENST00000543897.5:ENST00000536306.5:ENST00000536663.5:ENST00000540586.1	protein_coding	protein_coding	protein_coding	protein_coding	2	40	2	2.47949	2.711495	2.9435	0.0326974	0.00929849	0.145164	0.0817766
chr21	41888242	41888340	7466610	0	-	0.489796	(0.476,0.515]	chr21	760803	33	UTR3	UTR3:EXON_MRNA	C2CD2	ENSG00000157617.17	ENST00000380486.4:ENST00000329623.11:ENST00000449165.5:ENST00000482084.5:ENST00000482186.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	40	2	2.47949	2.711495	2.9435	0.0326974	0.00929849	0.145164	0.0817766
chr22	41284002	41284102	7591132	0	-	0.51	(0.476,0.515]	chr22	777373	16	INTRON	INTRON	RANGAP1	ENSG00000100401.20	ENST00000356244.8:ENST00000405486.5:ENST00000422838.1	protein_coding	protein_coding	protein_coding	protein_coding	2	40	2	2.47949	2.711495	2.9435	0.0326974	0.00929849	0.145164	0.0817766
chr3	196933921	196934020	1597115	0	+	0.50505	(0.476,0.515]	chr3	165450	21	UTR3	UTR3:EXON_MRNA	SENP5	ENSG00000119231.11	ENST00000323460.10	protein_coding	protein_coding	protein_coding	protein_coding	2	40	2	2.47949	2.711495	2.9435	0.0326974	0.00929849	0.145164	0.0817766
chr1	61698487	61698585	468101	0	-	0.428571	(0.408,0.44]	chr1	56559	11	UTR3	UTR3:EXON_MRNA:INTRON	TM2D1	ENSG00000162604.12	ENST00000606498.5:ENST00000294613.9:ENST00000371180.6:ENST00000488206.5:ENST00000472989.5:ENST00000468586.5:ENST00000371178.5:ENST00000494926.5:ENST00000496465.1:ENST00000371177.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	53	2	2.21857	2.7114700000000003	3.20437	0.0209591	0.00306596	0.112046	0.0509893
chr11	46582029	46582129	4947140	0	-	0.44	(0.408,0.44]	chr11	463525	326	INTRON	INTRON	AMBRA1	ENSG00000110497.15	ENST00000683756.1:ENST00000534300.5:ENST00000533727.5:ENST00000314845.7:ENST00000458649.6:ENST00000528950.1:ENST00000531542.1:ENST00000526606.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	53	2	2.21857	2.7114700000000003	3.20437	0.0209591	0.00306596	0.112046	0.0509893
chr9	37451139	37451239	4250875	0	-	0.42	(0.408,0.44]	chr9	391483	82	INTRON	INTRON	ZBTB5	ENSG00000168795.5	ENST00000307750.5	protein_coding	protein_coding	protein_coding	protein_coding	4	63	2	2.17784	2.7114700000000003	3.2451	0.00916282	0.00337792	0.0855292	0.0516884
chr2	32360871	32360970	730816	0	+	0.363636	(0.35,0.378]	chr2	84274	30	INTRON	INTRON	BIRC6	ENSG00000115760.15	ENST00000421745.7:ENST00000648282.1	protein_coding	protein_coding	protein_coding	protein_coding	4	70	2	1.87586	2.71135	3.54684	0.0268864	0.00119142	0.135275	0.0315806
chr7	72887839	72887939	3329874	0	+	0.25	[0,0.28]	chr7	309555	76	INTRON	INTRON	POM121	ENSG00000196313.13	ENST00000627934.3:ENST00000395270.5	protein_coding	protein_coding	protein_coding	protein_coding	4	91	2	2.37401	2.71134	3.04867	0.0104221	0.00568456	0.085482	0.0678837
chr2	171718037	171718136	918018	0	+	0.535354	(0.515,0.57]	chr2	101116	22	INTRON	INTRON	DYNC1I2	ENSG00000077380.16	ENST00000340296.8:ENST00000452242.5:ENST00000397119.8:ENST00000410079.7:ENST00000438879.5:ENST00000508530.5:ENST00000409197.5:ENST00000456808.5:ENST00000409317.5:ENST00000409773.5:ENST00000409453.5:ENST00000445378.5:ENST00000435234.5:ENST00000425485.5:ENST00000423910.5:ENST00000422646.1:ENST00000482454.5:ENST00000470286.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	34	2	2.43589	2.7113300000000002	2.98677	0.0370871	0.00632549	0.139194	0.0722266
chr1	246025958	246026058	675890	0	-	0.48	(0.476,0.515]	chr1	79713	375	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000391836.3:ENST00000464398.1:ENST00000453676.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	52	2	2.32001	2.711325	3.10264	0.0136217	0.00543163	0.101682	0.0645052
chr7	152421134	152421234	3681145	0	-	0.33	(0.32,0.35]	chr7	341660	621	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000682301.1:ENST00000452749.2:ENST00000680867.1:ENST00000683800.1:ENST00000684278.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	82	2	2.46027	2.711295	2.96232	0.0108973	0.00118924	0.0873034	0.031662
chr12	51129462	51129562	5325438	0	-	0.41	(0.408,0.44]	chr12	507890	39	INTRON	INTRON	TFCP2	ENSG00000135457.11	ENST00000257915.10:ENST00000685804.1:ENST00000549867.5:ENST00000548115.5:ENST00000548108.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	40	2	2.58179	2.71128	2.84077	0.024638	0.0132196	0.131869	0.0940535
chr13	113214068	113214167	5548332	0	+	0.414141	(0.408,0.44]	chr13	530119	36	INTRON	INTRON	CUL4A	ENSG00000139842.15	ENST00000375441.7:ENST00000326335.8:ENST00000451881.5:ENST00000617546.4:ENST00000488558.2:ENST00000375440.9:ENST00000474116.5:ENST00000494985.5:ENST00000463426.5:ENST00000498562.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	40	2	2.58179	2.71128	2.84077	0.024638	0.0132196	0.131869	0.0940535
chr16	47336907	47337006	6482453	0	-	0.424242	(0.408,0.44]	chr16	626999	227	INTRON	INTRON	ITFG1	ENSG00000129636.13	ENST00000320640.11:ENST00000542691.5:ENST00000544001.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	40	2	2.58179	2.71128	2.84077	0.024638	0.0132196	0.131869	0.0940535
chr6	42634444	42634538	2865776	0	+	0.446809	(0.44,0.476]	chr6	271089	12	INTRON	INTRON	UBR2	ENSG00000024048.11	ENST00000372899.6:ENST00000372901.2	protein_coding	protein_coding	protein_coding	protein_coding	7	116	2	2.55734	2.7112749999999997	2.86521	7.72402e-4	5.69284e-4	0.0255867	0.0220462
chr20	57392312	57392396	7288774	0	+	0.642857	(0.57,1]	chr20	741590	2	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RBM38	ENSG00000132819.17	ENST00000356208.10:ENST00000440234.6:ENST00000342690.4:ENST00000344785.10:ENST00000371219.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	55	2	2.39221	2.7112	3.03019	0.00352602	1.05548e-4	0.0546236	0.00920724
chr1	21762278	21762378	396661	0	-	0.36	(0.35,0.378]	chr1	47345	41	INTRON	INTRON	USP48	ENSG00000090686.16	ENST00000400301.5:ENST00000308271.14:ENST00000529637.5:ENST00000421625.6:ENST00000527823.5:ENST00000532737.1:ENST00000489108.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	76	2	2.53856	2.71117	2.88378	0.0326077	4.08693e-4	0.133687	0.0181306
chr3	25658839	25658939	1642109	0	-	0.37	(0.35,0.378]	chr3	168598	130	INTRON	INTRON	TOP2B	ENSG00000077097.16	ENST00000264331.9:ENST00000435706.6:ENST00000424225.1	protein_coding	protein_coding	protein_coding	protein_coding	5	78	2	2.01378	2.711145	3.40851	0.00952336	0.00205747	0.0863913	0.0409869
chr5	53958617	53958717	2617390	0	-	0.34	(0.32,0.35]	chr5	248835	466	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	73	2	2.10695	2.71114	3.31533	0.0127483	0.00323121	0.0987441	0.0507087
chr3	185596111	185596210	1585370	0	+	0.474747	(0.44,0.476]	chr3	164123	56	INTRON	INTRON	SENP2	ENSG00000163904.13	ENST00000430355.5:ENST00000465201.5:ENST00000453532.5:ENST00000296257.10:ENST00000413407.5:ENST00000439684.5:ENST00000458551.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	42	2	2.29425	2.71112	3.12799	0.0518406	0.0050635	0.176696	0.0621733
chr7	26202320	26202416	3292367	0	+	0.760417	(0.57,1]	chr7	305837	7	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	CBX3	ENSG00000122565.19	ENST00000337620.8:ENST00000396386.7:ENST00000456948.5:ENST00000409747.5	protein_coding	protein_coding	protein_coding	protein_coding	13	112	2	2.26734	2.711065	3.15479	4.76297e-4	1.33809e-6	0.0197443	7.50494e-4
chr7	73510335	73510435	3554980	0	-	0.58	(0.57,1]	chr7	330808	2	SS5_PROX	SS5_PROX:INTRON	BAZ1B	ENSG00000009954.11	ENST00000339594.9:ENST00000404251.1	protein_coding	protein_coding	protein_coding	protein_coding	9	73	2	2.08468	2.711055	3.33743	0.00216781	1.25642e-5	0.0417893	0.00264458
chr15	87367017	87367117	6253217	0	-	0.31	(0.28,0.32]	chr15	596790	398	INTRON	INTRON	ENSG00000259560	ENSG00000259560.2	ENST00000665121.1:ENST00000656130.1	lncRNA	lncRNA	lncRNA	lncRNA	2	51	2	2.46018	2.711025	2.96187	0.0375904	0.0114995	0.156054	0.0889104
chr5	134209418	134209518	2726525	0	-	0.39	(0.378,0.408]	chr5	256558	29	INTRON	INTRON	PPP2CA	ENSG00000113575.10	ENST00000481195.6:ENST00000522385.1:ENST00000523082.1:ENST00000231504.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	41	2	2.63247	2.710965	2.78946	0.0215745	0.0158859	0.123836	0.101453
chr9	97999377	97999477	4173201	0	+	0.39	(0.378,0.408]	chr9	380281	3	INTRON	INTRON	ANP32B	ENSG00000136938.9	ENST00000339399.5:ENST00000473205.1:ENST00000486769.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	41	2	2.63247	2.710965	2.78946	0.0215745	0.0158859	0.123836	0.101453
chr9	128342427	128342526	4204181	0	+	0.383838	(0.378,0.408]	chr9	384249	12	INTRON	INTRON	SLC27A4	ENSG00000167114.13	ENST00000300456.5:ENST00000372870.5	protein_coding	protein_coding	protein_coding	protein_coding	2	41	2	2.63247	2.710965	2.78946	0.0215745	0.0158859	0.123836	0.101453
chr16	85783293	85783393	6534446	0	-	0.52	(0.515,0.57]	chr16	633214	15	INTRON	INTRON	EMC8	ENSG00000131148.9	ENST00000435200.2:ENST00000253457.8	protein_coding	protein_coding	protein_coding	protein_coding	2	34	2	2.65834	2.71094	2.76354	0.0187418	0.0147344	0.117523	0.0983813
chr17	36550037	36550136	6601908	0	+	0.545455	(0.515,0.57]	chr17	642547	24	INTRON	INTRON	GGNBP2	ENSG00000278311.5	ENST00000613102.5:ENST00000617860.4:ENST00000618837.4:ENST00000616019.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	34	2	2.65834	2.71094	2.76354	0.0187418	0.0147344	0.117523	0.0983813
chr4	17923622	17923722	2117309	0	-	0.53	(0.515,0.57]	chr4	209129	139	INTRON	INTRON	LCORL	ENSG00000178177.17	ENST00000635767.2:ENST00000326877.8:ENST00000675131.1:ENST00000675143.1:ENST00000637787.1:ENST00000675605.1:ENST00000510451.5:ENST00000510121.5:ENST00000675927.1:ENST00000382224.5:ENST00000382226.5:ENST00000676061.1:ENST00000674942.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	34	2	2.65834	2.71094	2.76354	0.0187418	0.0147344	0.117523	0.0983813
chr22	20538211	20538311	7479659	0	+	0.54	(0.515,0.57]	chr22	762972	6	INTRON	INTRON	MED15	ENSG00000099917.17	ENST00000445987.5:ENST00000444094.5:ENST00000414658.5:ENST00000486656.5:ENST00000433831.5:ENST00000432052.5:ENST00000292733.11:ENST00000263205.11:ENST00000477824.5:ENST00000406969.5:ENST00000382974.6:ENST00000441501.5:ENST00000445189.5:ENST00000451058.5:ENST00000473028.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	92	2	1.89549	2.710695	3.5259	0.0094473	4.10167e-5	0.0817766	0.00519615
chr17	47145668	47145767	6788940	0	-	0.474747	(0.44,0.476]	chr17	669573	13	INTRON	INTRON	CDC27	ENSG00000004897.12	ENST00000066544.8:ENST00000531206.5:ENST00000533415.5:ENST00000527547.5:ENST00000526866.5:ENST00000525495.6:ENST00000574304.5:ENST00000575830.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	85	2	2.47804	2.7106250000000003	2.94321	0.00325838	0.00111162	0.0508595	0.0305384
chr8	105352688	105352788	3837582	0	+	0.4	(0.378,0.408]	chr8	354033	326	INTRON	INTRON	ZFPM2	ENSG00000169946.14	ENST00000518180.1:ENST00000407775.7:ENST00000520492.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	88	2	2.17296	2.7104299999999997	3.2479	0.0110512	2.54231e-4	0.0873897	0.0142045
chr17	64824124	64824224	6817712	0	-	0.4	(0.378,0.408]	chr17	674080	1	SS5_PROX	SS5_PROX:INTRON	PLEKHM1P1	ENSG00000214176.10	ENST00000578036.5:ENST00000582986.5:ENST00000582201.5:ENST00000692349.1:ENST00000580919.5:ENST00000691202.1:ENST00000397718.8:ENST00000584585.2:ENST00000687956.1:ENST00000688185.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	3	55	2	1.94681	2.71029	3.47377	0.0457723	0.00103087	0.149888	0.0294094
chr9	83701912	83702012	4273022	0	-	0.4	(0.378,0.408]	chr9	392981	154	INTRON	INTRON	UBQLN1	ENSG00000135018.14	ENST00000376395.9:ENST00000257468.11:ENST00000529923.1	protein_coding	protein_coding	protein_coding	protein_coding	3	55	2	1.94681	2.71029	3.47377	0.0457723	0.00103087	0.149888	0.0294094
chr17	59649943	59650038	6641869	0	+	0.378947	(0.378,0.408]	chr17	648544	12	INTRON	INTRON	CLTC	ENSG00000141367.12	ENST00000621829.4:ENST00000393043.5:ENST00000269122.8:ENST00000579456.5:ENST00000584313.5:ENST00000472129.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	78	2	2.46596	2.710275	2.95459	0.00957623	0.00125753	0.0820838	0.03295
chr7	152153721	152153817	3678395	0	-	0.25	[0,0.28]	chr7	341396	9	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	KMT2C	ENSG00000055609.21	ENST00000360104.8:ENST00000262189.11:ENST00000418061.2:ENST00000680877.1:ENST00000424877.6:ENST00000679560.1:ENST00000682040.1:ENST00000683120.1:ENST00000681923.1:ENST00000679393.1:ENST00000683200.1:ENST00000680029.1:ENST00000683337.1:ENST00000683178.1:ENST00000683502.1:ENST00000684261.1:ENST00000682283.1:ENST00000473186.5:ENST00000684649.1:ENST00000679882.1:ENST00000684069.1:ENST00000485241.2:ENST00000684330.1:ENST00000683886.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	240	2	2.0217	2.71027	3.39884	0.00798679	1.7013e-5	0.0766575	0.0031337
chr1	154244372	154244467	227772	0	+	0.505263	(0.476,0.515]	chr1	26281	7	INTRON	INTRON	UBAP2L	ENSG00000143569.19	ENST00000343815.10:ENST00000271877.11:ENST00000613315.4:ENST00000368504.5:ENST00000428931.6:ENST00000361546.6:ENST00000466173.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	64	2	1.63838	2.71025	3.78212	0.0555021	2.36145e-4	0.165463	0.0136195
chr11	118756003	118756081	5046006	0	-	0.487179	(0.476,0.515]	chr11	475746	1	SS5_PROX	SS5_PROX:INTRON	DDX6	ENSG00000110367.14	ENST00000534980.7:ENST00000620157.4:ENST00000529162.1:ENST00000526070.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	54	2	2.54157	2.7101800000000003	2.87879	0.00999149	0.00697457	0.0879541	0.0718189
chr20	47341956	47342056	7349364	0	-	0.55	(0.515,0.57]	chr20	749346	230	INTRON	INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000435836.5:ENST00000446894.5:ENST00000441977.1	protein_coding	protein_coding	protein_coding	protein_coding	7	79	2	1.88921	2.71003	3.53085	0.00671358	6.59951e-4	0.0707875	0.0232396
chr5	131642802	131642901	2719185	0	-	0.414141	(0.408,0.44]	chr5	255631	12	UTR3	UTR3:EXON_MRNA	FNIP1	ENSG00000217128.13	ENST00000510461.6:ENST00000307954.12:ENST00000307968.11	protein_coding	protein_coding	protein_coding	protein_coding	7	111	2	1.60905	2.70999	3.81093	0.02971	9.03544e-6	0.129022	0.00216015
chr1	1473286	1473385	1580	0	+	0.474747	(0.44,0.476]	chr1	364	8	INTRON	INTRON	ATAD3B	ENSG00000160072.20	ENST00000673477.1:ENST00000308647.8	protein_coding	protein_coding	protein_coding	protein_coding	2	39	2	2.46135	2.709975	2.9586	0.0374637	0.00758318	0.140008	0.0773151
chr11	3709453	3709553	4894271	0	-	0.47	(0.44,0.476]	chr11	458814	18	INTRON	INTRON	NUP98	ENSG00000110713.17	ENST00000359171.8:ENST00000324932.12:ENST00000650171.1:ENST00000355260.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	39	2	2.46135	2.709975	2.9586	0.0374637	0.00758318	0.140008	0.0773151
chr10	74180382	74180482	4456060	0	+	0.38	(0.378,0.408]	chr10	411534	31	INTRON	INTRON	ADK	ENSG00000156110.15	ENST00000672429.1:ENST00000539909.6:ENST00000286621.7:ENST00000478611.2:ENST00000673352.1:ENST00000673310.1:ENST00000672920.1:ENST00000672394.1:ENST00000372734.5:ENST00000673027.1:ENST00000541550.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	55	2	2.30628	2.70994	3.1136	0.0163339	0.00443339	0.101571	0.061054
chr12	46360915	46361012	5316569	0	-	0.319588	(0.28,0.32]	chr12	505763	29	UTR3	UTR3:EXON_MRNA	SLC38A2	ENSG00000134294.14	ENST00000256689.10:ENST00000549258.5:ENST00000551374.5:ENST00000552703.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	15	294	2	2.42639	2.709925	2.99346	1.82489e-4	1.23397e-4	0.01176	0.0099962
chr12	118360515	118360614	5430169	0	-	0.434343	(0.408,0.44]	chr12	518775	9	INTRON	INTRON	TAOK3	ENSG00000135090.14	ENST00000392533.8:ENST00000542532.5:ENST00000542692.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	65	2	1.58763	2.7099	3.83217	0.0639217	1.79883e-4	0.177824	0.0116696
chr16	8900343	8900429	6442088	0	-	0.302326	(0.28,0.32]	chr16	620464	2	SS5_PROX	SS5_PROX:INTRON	USP7	ENSG00000187555.16	ENST00000673704.1:ENST00000344836.9:ENST00000563961.5:ENST00000381886.8:ENST00000565455.5:ENST00000563085.5:ENST00000563043.1:ENST00000567692.1:ENST00000569448.1:ENST00000566131.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	49	2	2.39347	2.7098950000000004	3.02632	0.0504457	0.0071944	0.156383	0.0756118
chr22	42588072	42588171	7594751	0	-	0.282828	(0.28,0.32]	chr22	777839	1	INTRON	INTRON	POLDIP3	ENSG00000100227.19	ENST00000348657.6:ENST00000252115.10:ENST00000445215.5:ENST00000451060.6:ENST00000339677.10:ENST00000491021.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	49	2	2.39347	2.7098950000000004	3.02632	0.0504457	0.0071944	0.156383	0.0756118
chr2	176319504	176319604	925719	0	+	0.4	(0.378,0.408]	chr2	101688	148	INTRON	INTRON	MTX2	ENSG00000128654.14	ENST00000420864.5:ENST00000249442.11:ENST00000423461.6:ENST00000443241.5:ENST00000452865.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	65	2	2.2708	2.70986	3.14892	0.00646593	0.00499984	0.073179	0.0617433
chr4	143900277	143900377	2251441	0	-	0.4	(0.378,0.408]	chr4	219936	194	INTRON	INTRON	GYPE	ENSG00000197465.14	ENST00000358615.9:ENST00000506264.5:ENST00000437468.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	66	2	2.46509	2.70984	2.95459	0.00957623	0.00287152	0.0820838	0.0494641
chrX	110067596	110067696	7700685	0	+	0.47	(0.44,0.476]	chrX	788139	2	SS5_PROX	SS5_PROX:INTRON	TMEM164	ENSG00000157600.12	ENST00000372072.7:ENST00000372073.5:ENST00000372068.7:ENST00000288381.4:ENST00000461715.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	87	2	1.60853	2.70977	3.81101	0.020211	3.0729e-4	0.121301	0.0161362
chr14	99404224	99404310	5966449	0	-	0.453488	(0.44,0.476]	chr14	566883	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	SETD3	ENSG00000183576.13	ENST00000331768.10:ENST00000446066.5:ENST00000489770.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	39	2	2.67572	2.70972	2.74372	0.0212064	0.0153007	0.113017	0.108569
chr18	1343057	1343157	6941610	0	-	0.29	(0.28,0.32]	chr18	686579	191	INTRON	INTRON	LINC00470	ENSG00000132204.14	ENST00000657423.1:ENST00000657618.1:ENST00000584090.5:ENST00000660947.1:ENST00000669242.1:ENST00000660475.1:ENST00000653775.1:ENST00000661931.1:ENST00000412816.7:ENST00000577867.5:ENST00000584492.5:ENST00000667416.1:ENST00000661852.1:ENST00000657919.1:ENST00000661646.1:ENST00000667776.1:ENST00000654559.1:ENST00000661233.1:ENST00000653213.1:ENST00000659094.1:ENST00000660964.1:ENST00000577403.6:ENST00000660358.1:ENST00000669153.1:ENST00000657121.1:ENST00000655957.1:ENST00000659289.1:ENST00000665133.1:ENST00000671558.1:ENST00000666542.1:ENST00000663512.1:ENST00000582862.6:ENST00000578835.5:ENST00000669312.1:ENST00000581430.5:ENST00000581212.1:ENST00000658090.1	lncRNA	lncRNA	lncRNA	lncRNA	2	49	2	2.67975	2.7096	2.73945	0.0252505	0.017681	0.12011	0.11319
chr7	12349894	12349992	3484870	0	-	0.295918	(0.28,0.32]	chr7	325854	36	INTRON	INTRON	VWDE	ENSG00000146530.15	ENST00000275358.8:ENST00000452576.6:ENST00000521169.5:ENST00000649524.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	49	2	2.67975	2.7096	2.73945	0.0252505	0.017681	0.12011	0.11319
chr8	73745500	73745598	3970915	0	-	0.377551	(0.35,0.378]	chr8	364191	28	INTRON	INTRON	STAU2:ENSG00000258677	ENSG00000040341.18:ENSG00000258677.2	ENST00000524300.6:ENST00000523558.5:ENST00000521210.5:ENST00000355780.9:ENST00000521727.5:ENST00000521451.5:ENST00000522509.5:ENST00000517542.5:ENST00000518981.5:ENST00000518767.5:ENST00000518502.5:ENST00000521293.5:ENST00000521447.5:ENST00000524104.5:ENST00000522962.5:ENST00000521419.5:ENST00000524191.5:ENST00000524113.5:ENST00000520945.5:ENST00000521736.5:ENST00000521845.5:ENST00000520872.5:ENST00000358757.5:ENST00000519818.5:ENST00000522061.5:ENST00000523160.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	69	2	1.83633	2.709595	3.58286	0.0335602	6.77448e-4	0.134145	0.0236287
chr1	184873050	184873150	602033	0	-	0.33	(0.32,0.35]	chr1	71746	46	INTRON	INTRON	NIBAN1	ENSG00000135842.17	ENST00000367511.4	protein_coding	protein_coding	protein_coding	protein_coding	3	62	2	2.6321	2.70958	2.78706	0.0268	0.00253645	0.123349	0.0465056
chr19	10166391	10166491	7134576	0	-	0.6	(0.57,1]	chr19	719190	4	SS5_PROX	SS5_PROX:INTRON	DNMT1	ENSG00000130816.17	ENST00000340748.8:ENST00000359526.9:ENST00000592705.5:ENST00000679103.1:ENST00000677634.1:ENST00000676820.1:ENST00000677250.1:ENST00000677013.1:ENST00000677685.1:ENST00000677616.1:ENST00000676604.1:ENST00000678024.1:ENST00000676610.1:ENST00000678804.1:ENST00000679313.1:ENST00000677946.1:ENST00000589349.5:ENST00000591764.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	22	2	2.52405	2.70934	2.89463	0.0263139	0.00788262	0.133676	0.076155
chr7	2061499	2061599	3465211	0	-	0.62	(0.57,1]	chr7	324024	465	INTRON	INTRON	MAD1L1	ENSG00000002822.16	ENST00000406869.5:ENST00000399654.6:ENST00000402746.5:ENST00000265854.12:ENST00000438959.5:ENST00000444373.6:ENST00000421113.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	22	2	2.52405	2.70934	2.89463	0.0263139	0.00788262	0.133676	0.076155
chrX	123961856	123961956	7716751	0	+	0.63	(0.57,1]	chrX	789452	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	STAG2	ENSG00000101972.20	ENST00000394477.5:ENST00000218089.13:ENST00000455404.5:ENST00000483575.5:ENST00000687810.1:ENST00000687071.1:ENST00000469481.1:ENST00000458700.5:ENST00000371160.5:ENST00000435103.5:ENST00000687852.1:ENST00000371145.8:ENST00000692982.1:ENST00000371157.7:ENST00000691035.1:ENST00000686802.1:ENST00000691383.1:ENST00000686127.1:ENST00000371144.7:ENST00000458176.5:ENST00000466748.5:ENST00000471107.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	22	2	2.52405	2.70934	2.89463	0.0263139	0.00788262	0.133676	0.076155
chr6	36972259	36972357	3089663	0	-	0.397959	(0.378,0.408]	chr6	289031	17	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	MTCH1	ENSG00000137409.21	ENST00000695055.1:ENST00000695048.1:ENST00000695049.1:ENST00000695050.1:ENST00000695051.1:ENST00000695052.1:ENST00000695053.1:ENST00000695054.1:ENST00000695046.1:ENST00000695047.1:ENST00000695045.1:ENST00000695044.1:ENST00000695043.1:ENST00000373616.9:ENST00000373627.10:ENST00000695056.1:ENST00000695059.1:ENST00000695060.1:ENST00000695058.1:ENST00000695057.1:ENST00000695066.1:ENST00000695067.1:ENST00000695068.1:ENST00000695069.1:ENST00000695063.1:ENST00000695064.1:ENST00000695065.1:ENST00000695062.1:ENST00000695061.1:ENST00000695072.1:ENST00000695070.1:ENST00000695071.1:ENST00000695073.1:ENST00000695074.1:ENST00000695075.1:ENST00000695076.1:ENST00000418541.6:ENST00000460219.3:ENST00000492754.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	116	2	1.51	2.709315	3.90863	0.0137305	2.19981e-4	0.102445	0.0135522
chr1	50818762	50818862	450840	0	-	0.55	(0.515,0.57]	chr1	54261	167	INTRON	INTRON	FAF1	ENSG00000185104.21	ENST00000396153.7:ENST00000487898.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	115	2	2.54852	2.7093049999999996	2.87009	7.08868e-4	1.49863e-4	0.0242289	0.011202
chr16	24191419	24191503	6327338	0	+	0.321429	(0.32,0.35]	chr16	605798	1	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000466124.1	protein_coding	protein_coding	protein_coding	protein_coding	4	82	2	2.42352	2.7092349999999996	2.99495	0.0122807	0.00102621	0.091087	0.0294094
chr2	111315160	111315259	1209993	0	-	0.343434	(0.32,0.35]	chr2	128857	2	INTRON	INTRON	MIR4435-2HG	ENSG00000172965.17	ENST00000645030.2:ENST00000642191.1:ENST00000673798.1:ENST00000645051.2:ENST00000673649.1:ENST00000673962.1:ENST00000674132.1:ENST00000669658.1:ENST00000669917.1:ENST00000661559.1:ENST00000653687.1:ENST00000667670.1:ENST00000609220.2:ENST00000656760.1:ENST00000609902.6:ENST00000666683.1:ENST00000674070.1:ENST00000662335.1:ENST00000664422.1:ENST00000673775.1:ENST00000662889.1:ENST00000665096.1:ENST00000674092.1:ENST00000673958.1:ENST00000673770.1:ENST00000673961.1:ENST00000658936.1:ENST00000662635.1:ENST00000666204.1:ENST00000659458.1:ENST00000664443.1:ENST00000670295.1:ENST00000661655.1:ENST00000666390.1:ENST00000659079.1:ENST00000660442.1:ENST00000664009.1:ENST00000439362.6:ENST00000654473.1:ENST00000664999.1:ENST00000673728.1:ENST00000659791.1:ENST00000666144.1:ENST00000659933.1:ENST00000670715.1:ENST00000656303.1:ENST00000666367.1:ENST00000666652.1:ENST00000669050.1:ENST00000667218.1:ENST00000656067.1:ENST00000653568.1:ENST00000643013.1:ENST00000673866.1:ENST00000673700.1:ENST00000443467.6:ENST00000451884.6:ENST00000669875.1:ENST00000673653.1:ENST00000673988.1:ENST00000661945.1:ENST00000669515.1:ENST00000431385.6:ENST00000655573.1:ENST00000656416.1:ENST00000662384.1:ENST00000674037.1:ENST00000432818.5:ENST00000674013.1:ENST00000673843.1:ENST00000661707.1:ENST00000444301.5	lncRNA	lncRNA	lncRNA	lncRNA	2	45	2	2.51061	2.7092349999999996	2.90786	0.0364463	0.00993008	0.138959	0.0877296
chr3	98584940	98585040	1755072	0	-	0.33	(0.32,0.35]	chr3	177992	1	SS5_PROX	SS5_PROX:INTRON	CPOX	ENSG00000080819.9	ENST00000647941.2:ENST00000510489.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	45	2	2.51061	2.7092349999999996	2.90786	0.0364463	0.00993008	0.138959	0.0877296
chr22	49654524	49654624	7602633	0	-	0.57	(0.515,0.57]	chr22	778594	271	INTRON	INTRON	MIR3667HG	ENSG00000188511.13	ENST00000414287.5:ENST00000416411.1:ENST00000689875.1:ENST00000400023.5:ENST00000405854.5	lncRNA	lncRNA	lncRNA	lncRNA	4	54	2	2.27116	2.70923	3.1473	0.00601759	0.00397184	0.0700813	0.0549214
chr15	55190179	55190277	6179945	0	-	0.438776	(0.408,0.44]	chr15	589063	35	INTRON	INTRON	RSL24D1	ENSG00000137876.11	ENST00000260443.9:ENST00000569386.2:ENST00000677172.1:ENST00000677147.1:ENST00000562895.2:ENST00000677989.1:ENST00000677730.1:ENST00000677092.1:ENST00000562993.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	81	2	2.08773	2.7092	3.33067	0.00404379	0.0024459	0.0578376	0.0445752
chr3	42620779	42620872	1406178	0	+	0.354839	(0.35,0.378]	chr3	147670	6	EXON_MRNA	EXON_MRNA:INTRON	NKTR	ENSG00000114857.19	ENST00000468735.6:ENST00000487466.5:ENST00000429888.5:ENST00000232978.13:ENST00000478488.1:ENST00000465584.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	17	256	2	2.01383	2.7091950000000002	3.40456	7.66793e-4	1.48505e-5	0.0254532	0.00309701
chr20	38420591	38420668	7342153	0	-	0.337662	(0.32,0.35]	chr20	748297	1	EXON_MRNA	EXON_MRNA:EXON_LNCRNA	SNHG17	ENSG00000196756.14	ENST00000654008.2:ENST00000658076.1:ENST00000662982.2:ENST00000667188.1:ENST00000456953.7:ENST00000654183.2:ENST00000663540.2:ENST00000651115.2:ENST00000667835.1:ENST00000660885.2:ENST00000662213.1:ENST00000665233.2:ENST00000666268.2:ENST00000665735.1:ENST00000660558.2:ENST00000691280.1:ENST00000658488.2:ENST00000688336.1:ENST00000668054.2:ENST00000690441.1:ENST00000655520.2:ENST00000687490.1:ENST00000664626.1:ENST00000658051.1:ENST00000668042.1:ENST00000686971.1:ENST00000663187.1:ENST00000669114.1:ENST00000653343.1:ENST00000666225.1:ENST00000659186.1:ENST00000671309.1:ENST00000669405.1:ENST00000666806.1:ENST00000657665.1:ENST00000667282.1:ENST00000655311.1:ENST00000657868.1:ENST00000663534.1:ENST00000658141.1:ENST00000689917.1:ENST00000664073.2:ENST00000653697.1:ENST00000656320.1:ENST00000686814.1:ENST00000417578.7:ENST00000654853.1:ENST00000665440.1:ENST00000659102.1:ENST00000436764.7:ENST00000668482.2:ENST00000671249.1:ENST00000655692.1:ENST00000662568.1:ENST00000659255.1:ENST00000665693.1:ENST00000693250.1:ENST00000691368.1:ENST00000693227.1:ENST00000690361.1:ENST00000670051.1:ENST00000667912.1:ENST00000693665.1:ENST00000665181.1:ENST00000687532.1:ENST00000691386.1:ENST00000693684.1:ENST00000666331.1:ENST00000669480.1:ENST00000658905.1:ENST00000661252.1:ENST00000669137.1:ENST00000688133.1:ENST00000689414.1:ENST00000691314.1:ENST00000669033.1:ENST00000686145.1:ENST00000653938.1:ENST00000663784.1:ENST00000665003.1:ENST00000659400.1:ENST00000653753.1:ENST00000449469.5:ENST00000654389.1:ENST00000657429.1:ENST00000667412.1:ENST00000654092.1:ENST00000653277.1:ENST00000663955.1:ENST00000664964.1:ENST00000658324.1:ENST00000666549.1:ENST00000656023.1:ENST00000692262.1:ENST00000414142.5:ENST00000659753.1:ENST00000670958.1:ENST00000657216.2:ENST00000664636.1:ENST00000657843.1:ENST00000660189.1:ENST00000660064.1:ENST00000655198.1:ENST00000662572.1:ENST00000423536.6:ENST00000658455.1:ENST00000666419.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	2	45	2	2.57263	2.70916	2.84569	0.0312297	0.0121137	0.13151	0.0962599
chr5	109809575	109809674	2450221	0	+	0.333333	(0.32,0.35]	chr5	234656	49	INTRON	INTRON	MAN2A1	ENSG00000112893.10	ENST00000261483.5:ENST00000502261.5:ENST00000508043.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	45	2	2.57263	2.70916	2.84569	0.0312297	0.0121137	0.13151	0.0962599
chr7	128749502	128749601	3408482	0	+	0.343434	(0.32,0.35]	chr7	318435	3	INTRON	INTRON	CALU	ENSG00000128595.17	ENST00000535011.6:ENST00000542996.6:ENST00000249364.9:ENST00000449187.6:ENST00000479257.5	protein_coding	protein_coding	protein_coding	protein_coding	2	45	2	2.57263	2.70916	2.84569	0.0312297	0.0121137	0.13151	0.0962599
chr9	123022353	123022452	4195912	0	+	0.333333	(0.32,0.35]	chr9	382871	15	INTRON	INTRON	RABGAP1	ENSG00000011454.18	ENST00000456584.5:ENST00000373647.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	45	2	2.57263	2.70916	2.84569	0.0312297	0.0121137	0.13151	0.0962599
chr12	110301129	110301229	5226301	0	+	0.48	(0.476,0.515]	chr12	495250	40	INTRON	INTRON	ATP2A2	ENSG00000174437.18	ENST00000308664.10:ENST00000539276.7:ENST00000377685.9:ENST00000548169.2:ENST00000550248.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	39	2	2.40608	2.709025	3.01197	0.0425709	0.00633162	0.148082	0.0722266
chr17	22168247	22168347	6579346	0	+	0.48	(0.476,0.515]	chr17	639556	770	INTRON	INTRON	UBBP4	ENSG00000263563.7	ENST00000648259.1:ENST00000688301.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	2	39	2	2.40608	2.709025	3.01197	0.0425709	0.00633162	0.148082	0.0722266
chr2	148054050	148054150	887081	0	+	0.5	(0.476,0.515]	chr2	98623	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MBD5	ENSG00000204406.14	ENST00000407073.5:ENST00000488372.5:ENST00000496158.5:ENST00000642680.2:ENST00000638130.1:ENST00000637308.1:ENST00000473478.5:ENST00000635796.1:ENST00000637997.1:ENST00000470063.5:ENST00000638043.2:ENST00000638090.1:ENST00000637445.1:ENST00000637242.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	39	2	2.40608	2.709025	3.01197	0.0425709	0.00633162	0.148082	0.0722266
chr4	48419224	48419324	1957811	0	+	0.49	(0.476,0.515]	chr4	196163	242	INTRON	INTRON	SLAIN2	ENSG00000109171.15	ENST00000264313.11:ENST00000512093.5:ENST00000510595.1	protein_coding	protein_coding	protein_coding	protein_coding	2	39	2	2.40608	2.709025	3.01197	0.0425709	0.00633162	0.148082	0.0722266
chr17	77333306	77333406	6679967	0	+	0.34	(0.32,0.35]	chr17	652501	91	INTRON	INTRON	SEPTIN9	ENSG00000184640.20	ENST00000589070.1:ENST00000591833.5:ENST00000591198.5:ENST00000427177.6:ENST00000590576.5:ENST00000431235.6:ENST00000449803.6:ENST00000587237.1:ENST00000329047.13:ENST00000588575.1:ENST00000590595.1:ENST00000590294.6:ENST00000591934.1:ENST00000588690.6:ENST00000592098.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	62	2	2.13945	2.709015	3.27858	0.0254517	0.00368368	0.133676	0.0535094
chr4	126516025	126516125	2235869	0	-	0.49	(0.476,0.515]	chr4	219023	505	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	20	311	2	2.23787	2.708945	3.18002	3.39564e-4	1.12268e-6	0.0170719	6.08503e-4
chr12	6588722	6588822	5259453	0	-	0.45	(0.44,0.476]	chr12	500741	3	SS3_PROX	SS3_PROX:INTRON	CHD4	ENSG00000111642.16	ENST00000645022.1:ENST00000544040.7:ENST00000544484.6:ENST00000357008.7:ENST00000642810.1:ENST00000643335.1:ENST00000643815.1:ENST00000646806.1:ENST00000644137.1:ENST00000642879.1:ENST00000645645.1:ENST00000642594.1:ENST00000646268.1:ENST00000645095.1:ENST00000644352.1:ENST00000647483.1:ENST00000646608.1:ENST00000645005.1:ENST00000644801.1:ENST00000644289.1:ENST00000646366.1:ENST00000644356.1:ENST00000646070.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	52	2	2.49823	2.7088650000000003	2.9195	0.0102021	0.00718224	0.0850389	0.0756118
chr16	30699658	30699742	6338648	0	+	0.452381	(0.44,0.476]	chr16	607710	4	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SRCAP	ENSG00000080603.17	ENST00000411466.6:ENST00000262518.9	protein_coding	protein_coding	protein_coding	protein_coding	7	116	2	2.4805	2.7087700000000003	2.93704	0.00150019	2.76819e-4	0.0351802	0.0148174
chr1	24430404	24430504	45173	0	+	0.51	(0.476,0.515]	chr1	5557	84	INTRON	INTRON	NIPAL3	ENSG00000001461.17	ENST00000374399.9:ENST00000003912.7:ENST00000358028.8:ENST00000339255.2	protein_coding	protein_coding	protein_coding	protein_coding	2	39	2	2.65268	2.70864	2.7646	0.0201975	0.0162075	0.121243	0.101453
chr11	96268392	96268492	5023620	0	-	0.51	(0.476,0.515]	chr11	473809	1745	INTRON	INTRON	MAML2	ENSG00000184384.14	ENST00000524717.6	protein_coding	protein_coding	protein_coding	protein_coding	2	39	2	2.65268	2.70864	2.7646	0.0201975	0.0162075	0.121243	0.101453
chr17	45634800	45634900	6618274	0	+	0.5	(0.476,0.515]	chr17	645442	1	SS3_PROX	SS3_PROX:INTRON	LINC02210	ENSG00000204650.14	ENST00000585118.5:ENST00000591271.5:ENST00000585122.5:ENST00000455565.5:ENST00000580220.2:ENST00000444561.2	transcribed_unitary_pseudogene	processed_transcript	transcribed_unitary_pseudogene	processed_transcript:transcribed_unitary_pseudogene	2	39	2	2.65268	2.70864	2.7646	0.0201975	0.0162075	0.121243	0.101453
chr19	1055451	1055539	6993493	0	+	0.477273	(0.476,0.515]	chr19	692658	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ABCA7	ENSG00000064687.13	ENST00000433129.6:ENST00000263094.11:ENST00000435683.7:ENST00000530092.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	39	2	2.65268	2.70864	2.7646	0.0201975	0.0162075	0.121243	0.101453
chr19	10990649	10990749	7015867	0	+	0.49	(0.476,0.515]	chr19	697221	1	SS3_PROX	SS3_PROX:INTRON	SMARCA4	ENSG00000127616.20	ENST00000644737.1:ENST00000642726.1:ENST00000646484.1:ENST00000643549.1:ENST00000643296.1:ENST00000647230.1:ENST00000642628.1:ENST00000646510.1:ENST00000429416.8:ENST00000344626.10:ENST00000646693.2:ENST00000645460.1:ENST00000541122.6:ENST00000589677.5:ENST00000444061.8:ENST00000590574.6:ENST00000591545.6:ENST00000643995.1:ENST00000644327.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	39	2	2.65268	2.70864	2.7646	0.0201975	0.0162075	0.121243	0.101453
chr3	155837037	155837137	1844172	0	-	0.48	(0.476,0.515]	chr3	185550	26	INTRON	INTRON	SLC33A1	ENSG00000169359.16	ENST00000643144.2:ENST00000359479.7:ENST00000468581.2:ENST00000646424.1:ENST00000644094.1:ENST00000642438.1:ENST00000644855.1:ENST00000475842.5:ENST00000496772.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	39	2	2.65268	2.70864	2.7646	0.0201975	0.0162075	0.121243	0.101453
chr7	23401544	23401644	3502972	0	-	0.5	(0.476,0.515]	chr7	326881	70	INTRON	INTRON	IGF2BP3	ENSG00000136231.14	ENST00000258729.8:ENST00000421467.6:ENST00000468263.5:ENST00000479504.5:ENST00000466809.6:ENST00000491719.5:ENST00000465058.5:ENST00000469723.5:ENST00000474105.5:ENST00000476938.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	39	2	2.65268	2.70864	2.7646	0.0201975	0.0162075	0.121243	0.101453
chr9	91828488	91828588	4284047	0	-	0.49	(0.476,0.515]	chr9	393909	523	INTRON	INTRON	ROR2	ENSG00000169071.15	ENST00000375715.5:ENST00000375708.4:ENST00000550066.5:ENST00000495386.5:ENST00000546883.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	39	2	2.65268	2.70864	2.7646	0.0201975	0.0162075	0.121243	0.101453
chr2	27355487	27355586	1086866	0	-	0.393939	(0.378,0.408]	chr2	116362	45	INTRON	INTRON	GTF3C2	ENSG00000115207.15	ENST00000359541.6:ENST00000264720.8:ENST00000457748.1:ENST00000423998.1	protein_coding	protein_coding	protein_coding	protein_coding	8	138	2	2.62749	2.70857	2.78965	8.24763e-4	2.29046e-4	0.026553	0.0133403
chr4	32080769	32080869	1942256	0	+	0.36	(0.35,0.378]	chr4	194727	826	INTRON	INTRON	LINC02506	ENSG00000251129.3	ENST00000662669.1:ENST00000665582.2:ENST00000667252.2:ENST00000660373.2:ENST00000684849.1:ENST00000513211.2:ENST00000659613.1:ENST00000657576.1:ENST00000686730.1:ENST00000685407.1:ENST00000685455.1:ENST00000655951.1	lncRNA	lncRNA	lncRNA	lncRNA	3	59	2	1.75561	2.70856	3.66151	0.0739399	4.717e-4	0.190914	0.0196294
chr13	110911553	110911653	5650616	0	-	0.47	(0.44,0.476]	chr13	538395	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ANKRD10	ENSG00000088448.14	ENST00000267339.6:ENST00000310847.8:ENST00000465753.1:ENST00000494859.5:ENST00000460846.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	12	195	2	2.50024	2.70855	2.91686	7.41088e-4	1.23253e-5	0.0250148	0.00261354
chr11	46817085	46817175	4948471	0	-	0.4	(0.378,0.408]	chr11	463841	3	INTRON	INTRON	CKAP5	ENSG00000175216.15	ENST00000529230.6:ENST00000312055.9:ENST00000354558.7:ENST00000526496.1	protein_coding	protein_coding	protein_coding	protein_coding	4	66	2	1.73164	2.708405	3.68517	0.0441773	3.90172e-4	0.149888	0.0177751
chr3	183737925	183738024	1580697	0	+	0.272727	[0,0.28]	chr3	163062	7	INTRON	INTRON	YEATS2	ENSG00000163872.16	ENST00000305135.10	protein_coding	protein_coding	protein_coding	protein_coding	8	191	2	2.65089	2.708375	2.76586	0.00300637	2.58787e-4	0.0493883	0.014326
chr4	23019576	23019676	1928318	0	+	0.4	(0.378,0.408]	chr4	193937	143	INTRON	INTRON	ENSG00000248837	ENSG00000248837.7	ENST00000659942.1:ENST00000655325.1:ENST00000655182.1:ENST00000660103.1:ENST00000506425.2:ENST00000652324.1:ENST00000653008.1:ENST00000654546.1:ENST00000666412.1:ENST00000511453.5:ENST00000667179.1:ENST00000655768.1:ENST00000661585.1:ENST00000660296.1:ENST00000663529.1:ENST00000653872.1:ENST00000660370.1:ENST00000667156.1:ENST00000658109.1:ENST00000653188.1:ENST00000662431.1:ENST00000654588.1:ENST00000666579.1:ENST00000503017.2:ENST00000665739.1:ENST00000671537.1:ENST00000663348.1	lncRNA	lncRNA	lncRNA	lncRNA	5	76	2	1.85455	2.708315	3.56208	0.0192049	6.94246e-4	0.108861	0.0240761
chr4	39456305	39456405	2129321	0	-	0.36	(0.35,0.378]	chr4	209920	6	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	RPL9	ENSG00000163682.17	ENST00000645496.2:ENST00000295955.14:ENST00000503277.6:ENST00000508595.6:ENST00000449470.6:ENST00000506581.6:ENST00000644328.1:ENST00000503040.5:ENST00000511075.5:ENST00000437992.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	134	2	2.59827	2.70826	2.81825	0.0016492	3.60364e-4	0.0375159	0.0175741
chr16	11909909	11910009	6446351	0	-	0.43	(0.408,0.44]	chr16	621130	59	INTRON	INTRON	GSPT1	ENSG00000103342.13	ENST00000434724.7:ENST00000439887.6:ENST00000420576.6:ENST00000568849.5:ENST00000562169.1	protein_coding	protein_coding	protein_coding	protein_coding	10	165	2	2.40127	2.708215	3.01516	0.00123682	2.36429e-5	0.0322669	0.00380885
chr2	31883562	31883662	1089837	0	-	0.38	(0.378,0.408]	chr2	116866	1	SS3_PROX	SS3_PROX:INTRON	MEMO1:DPY30	ENSG00000162959.14:ENSG00000162961.14	ENST00000295065.9:ENST00000446765.5:ENST00000404530.6:ENST00000379383.7:ENST00000490459.5:ENST00000426310.6:ENST00000422936.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	66	2	1.98888	2.70819	3.4275	0.0205239	0.00126053	0.110999	0.03295
chr11	66078502	66078601	4807950	0	+	0.383838	(0.378,0.408]	chr11	447330	73	INTRON	INTRON	PACS1	ENSG00000175115.13	ENST00000320580.9:ENST00000527224.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	54	2	2.51464	2.7081299999999997	2.90162	0.0113157	0.00684341	0.0886121	0.0748032
chr11	68466616	68466716	4817391	0	+	0.56	(0.515,0.57]	chr11	448907	54	INTRON	INTRON	PPP6R3	ENSG00000110075.15	ENST00000530427.5:ENST00000528635.5:ENST00000529907.5:ENST00000533127.5:ENST00000534534.5:ENST00000529344.5:ENST00000524845.5:ENST00000393800.7:ENST00000265637.8:ENST00000524904.5:ENST00000393801.7:ENST00000265636.9:ENST00000529710.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	60	2	2.58624	2.7080900000000003	2.82994	0.00526399	0.00168661	0.0633874	0.0381778
chr17	81589204	81589304	6849113	0	-	0.53	(0.515,0.57]	chr17	678167	1	SS3_PROX	SS3_PROX:INTRON	NPLOC4	ENSG00000182446.14	ENST00000331134.11:ENST00000374747.9:ENST00000574897.5:ENST00000572351.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	60	2	2.58624	2.7080900000000003	2.82994	0.00526399	0.00168661	0.0633874	0.0381778
chr1	167378181	167378281	246443	0	+	0.38	(0.378,0.408]	chr1	29343	12	INTRON	INTRON	POU2F1	ENSG00000143190.23	ENST00000367866.7:ENST00000271411.8:ENST00000429375.6:ENST00000560232.6:ENST00000367865.5:ENST00000492850.5:ENST00000541643.7:ENST00000648671.1:ENST00000367862.9:ENST00000420254.7:ENST00000470928.3:ENST00000443275.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	42	2	2.13703	2.70805	3.27907	0.0797592	0.0023379	0.19979	0.0442989
chr2	224549309	224549409	1335978	0	-	0.25	[0,0.28]	chr2	140151	133	INTRON	INTRON	CUL3	ENSG00000036257.14	ENST00000344951.8:ENST00000264414.9:ENST00000409096.5:ENST00000409777.5:ENST00000432260.2:ENST00000436172.1:ENST00000546102.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	104	2	2.16951	2.70805	3.24659	0.0065865	0.00570201	0.0737338	0.0656459
chr5	10398917	10399014	2318111	0	+	0.412371	(0.408,0.44]	chr5	224668	12	INTRON	INTRON	MARCHF6	ENSG00000145495.16	ENST00000274140.10:ENST00000449913.6:ENST00000511802.5:ENST00000503788.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	14	227	2	2.48513	2.70801	2.93089	3.34933e-4	1.11446e-5	0.0169847	0.00246628
chr10	96844319	96844419	4503085	0	+	0.33	(0.32,0.35]	chr10	414529	101	INTRON	INTRON	LCOR	ENSG00000196233.14	ENST00000676067.1:ENST00000676257.1:ENST00000676187.1:ENST00000675151.1:ENST00000675687.1:ENST00000675251.1:ENST00000676123.1:ENST00000371103.8:ENST00000675471.1:ENST00000421806.4:ENST00000675902.1:ENST00000540664.6:ENST00000676414.1:ENST00000675537.1:ENST00000675117.1:ENST00000675125.1:ENST00000356016.7:ENST00000371097.8:ENST00000676381.1:ENST00000674796.1:ENST00000674725.1:ENST00000675971.1:ENST00000676373.1:ENST00000676314.1:ENST00000675915.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	46	2	2.23182	2.7078699999999998	3.18392	0.068598	0.00379806	0.184298	0.0562562
chr7	111430880	111430980	3622795	0	-	0.45	(0.44,0.476]	chr7	337108	381	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000452895.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding	3	55	2	2.59632	2.70764	2.81896	0.0120766	0.00579248	0.0962311	0.0662959
chr8	140634090	140634190	4076552	0	-	0.58	(0.57,1]	chr8	370289	69	INTRON	INTRON	AGO2	ENSG00000123908.12	ENST00000220592.10:ENST00000519980.5:ENST00000523609.5:ENST00000517293.5:ENST00000518019.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	36	2	2.49621	2.7075500000000003	2.91889	0.00719009	0.00209832	0.0756118	0.0413494
chr9	124949306	124949406	4350017	0	-	0.34	(0.32,0.35]	chr9	399421	68	UTR3	UTR3:EXON_MRNA	SCAI	ENSG00000173611.18	ENST00000336505.11	protein_coding	protein_coding	protein_coding	protein_coding	5	84	2	2.21292	2.70754	3.20216	0.00480708	0.00445585	0.0610799	0.0602209
chr5	95929733	95929833	2682195	0	-	0.38	(0.378,0.408]	chr5	253552	98	INTRON	INTRON	ELL2	ENSG00000118985.16	ENST00000237853.9:ENST00000513343.1:ENST00000506628.1:ENST00000508694.1:ENST00000635633.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	63	2	2.13703	2.7074350000000003	3.27784	0.0797592	2.17147e-4	0.19979	0.0129235
chr7	107093283	107093383	3377654	0	+	0.44	(0.408,0.44]	chr7	316252	10	INTRON	INTRON	PRKAR2B	ENSG00000005249.13	ENST00000265717.5:ENST00000393613.6:ENST00000488792.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	63	2	2.30838	2.707395	3.10641	0.00555646	0.00547703	0.0671198	0.0648867
chr7	107198488	107198585	3378666	0	+	0.43299	(0.408,0.44]	chr7	316368	15	INTRON	INTRON	HBP1	ENSG00000105856.14	ENST00000468410.5:ENST00000222574.9:ENST00000485846.5:ENST00000463202.5:ENST00000461963.1:ENST00000607681.1:ENST00000463790.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	63	2	2.30838	2.707395	3.10641	0.00555646	0.00547703	0.0671198	0.0648867
chr12	56242350	56242449	5333864	0	-	0.565657	(0.515,0.57]	chr12	509424	47	UTR3	UTR3:EXON_MRNA:INTRON	ANKRD52	ENSG00000139645.11	ENST00000267116.8:ENST00000548241.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	60	2	2.53845	2.7073549999999997	2.87626	0.00632226	0.00136224	0.0687526	0.0339121
chr7	50609256	50609355	3530814	0	-	0.292929	(0.28,0.32]	chr7	329409	23	INTRON	INTRON	GRB10	ENSG00000106070.20	ENST00000335866.7:ENST00000398812.6:ENST00000398810.6:ENST00000401949.6:ENST00000402578.5:ENST00000644769.1:ENST00000403097.6:ENST00000644879.1:ENST00000406641.5:ENST00000402497.6:ENST00000357271.9:ENST00000643299.1:ENST00000407526.6:ENST00000645075.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	89	2	2.47203	2.707235	2.94244	0.0114089	0.00144407	0.0886611	0.0348397
chr21	28976530	28976629	7436529	0	-	0.414141	(0.408,0.44]	chr21	758418	47	INTRON	INTRON	LTN1	ENSG00000198862.14	ENST00000614971.4:ENST00000389194.7:ENST00000361371.10:ENST00000389195.7:ENST00000483326.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	65	2	2.57365	2.70721	2.84077	0.0132196	0.00172241	0.0940535	0.0383099
chr2	61286622	61286719	1128671	0	-	0.42268	(0.408,0.44]	chr2	121318	13	INTRON	INTRON	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000472706.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	108	2	1.90614	2.707165	3.50819	0.0103993	5.7683e-5	0.0854042	0.00620725
chr21	33449362	33449459	7440664	0	-	0.463918	(0.44,0.476]	chr21	759328	7	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TMEM50B	ENSG00000142188.17	ENST00000420455.5:ENST00000470682.5:ENST00000542230.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	29	457	2	2.54724	2.707155	2.86707	5.73146e-5	9.15903e-7	0.00659651	5.42538e-4
chr3	100290277	100290377	1465866	0	+	0.45	(0.44,0.476]	chr3	153614	3	SS3_PROX	SS3_PROX:INTRON	TBC1D23	ENSG00000036054.13	ENST00000394144.9:ENST00000485687.5:ENST00000344949.9:ENST00000486274.5:ENST00000471098.1:ENST00000475134.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	71	2	2.29126	2.7071199999999997	3.12298	0.0165638	4.66209e-4	0.102621	0.0195589
chr13	19717974	19718074	5552290	0	-	0.4	(0.378,0.408]	chr13	530696	80	INTRON	INTRON	PSPC1	ENSG00000121390.19	ENST00000471658.5:ENST00000492741.5:ENST00000635562.1:ENST00000338910.9:ENST00000619300.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	149	2	2.10194	2.7070600000000002	3.31218	9.54322e-4	2.90033e-4	0.0283984	0.0157077
chr19	54205675	54205775	7098881	0	+	0.48	(0.476,0.515]	chr19	711940	37	INTRON	INTRON	RPS9	ENSG00000170889.14	ENST00000484121.5:ENST00000448962.5:ENST00000302907.9:ENST00000626547.2:ENST00000436445.5:ENST00000391752.5:ENST00000402367.5:ENST00000445961.5:ENST00000391751.7:ENST00000495002.5:ENST00000391753.6:ENST00000441429.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	79	2	2.3399	2.7070600000000002	3.07422	0.00506023	0.00275491	0.0646039	0.0469265
chr1	30950661	30950761	411722	0	-	0.53	(0.515,0.57]	chr1	49638	4	SS3_PROX	SS3_PROX:INTRON	PUM1	ENSG00000134644.16	ENST00000426105.7:ENST00000373747.7:ENST00000257075.9:ENST00000424085.6:ENST00000525843.5:ENST00000440538.6:ENST00000498419.5:ENST00000373741.8:ENST00000373742.6:ENST00000529846.5:ENST00000525997.1:ENST00000527498.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	74	2	2.48902	2.70704	2.92506	0.00760558	2.50659e-4	0.0749571	0.0140705
chr7	121007170	121007270	3393822	0	+	0.37	(0.35,0.378]	chr7	317676	127	INTRON	INTRON	CPED1	ENSG00000106034.18	ENST00000340646.9:ENST00000310396.10:ENST00000428526.5:ENST00000495036.5:ENST00000450913.6:ENST00000520801.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	137	2	2.06294	2.70703	3.35112	0.00222761	2.67918e-4	0.0435144	0.0149998
chr15	80071768	80071867	6071154	0	+	0.323232	(0.32,0.35]	chr15	578304	107	INTRON	INTRON	ZFAND6	ENSG00000086666.19	ENST00000613266.4:ENST00000561060.5:ENST00000559157.5:ENST00000261749.11:ENST00000561012.5:ENST00000564367.5:ENST00000558494.5:ENST00000618205.4:ENST00000560470.5	protein_coding	protein_coding	protein_coding	protein_coding	4	75	2	2.56589	2.707005	2.84812	0.0147575	0.00204522	0.0983813	0.041908
chr20	47597449	47597549	7281953	0	+	0.43	(0.408,0.44]	chr20	740475	138	INTRON	INTRON	NCOA3	ENSG00000124151.19	ENST00000371998.8:ENST00000372004.7:ENST00000371997.3	protein_coding	protein_coding	protein_coding	protein_coding	3	53	2	2.69457	2.70684	2.71911	0.0189489	0.00331036	0.108861	0.0527031
chr8	115543050	115543150	4030399	0	-	0.43	(0.408,0.44]	chr8	367954	274	INTRON	INTRON	TRPS1	ENSG00000104447.13	ENST00000395715.8:ENST00000640765.1:ENST00000220888.9:ENST00000519076.5:ENST00000520276.5:ENST00000519674.1	protein_coding	protein_coding	protein_coding	protein_coding	3	53	2	2.69457	2.70684	2.71911	0.0189489	0.00331036	0.108861	0.0527031
chr9	37189251	37189351	4118349	0	+	0.33	(0.32,0.35]	chr9	375389	23	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000461038.5:ENST00000488607.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	192	2	2.45496	2.70675	2.95854	0.00129351	4.90902e-5	0.0329329	0.00573004
chr7	2357615	2357715	3269648	0	+	0.37	(0.35,0.378]	chr7	303797	18	INTRON	INTRON	EIF3B	ENSG00000106263.19	ENST00000431643.5:ENST00000360876.9:ENST00000413917.5:ENST00000397011.2	protein_coding	protein_coding	protein_coding	protein_coding	3	38	2	1.6122	2.7067449999999997	3.80129	0.0616849	0.0504034	0.17488	0.174021
chr13	95145595	95145695	5638296	0	-	0.35	(0.32,0.35]	chr13	537056	292	INTRON	INTRON	ABCC4	ENSG00000125257.16	ENST00000645237.2:ENST00000643051.1:ENST00000643842.1:ENST00000646439.1:ENST00000644880.1:ENST00000643816.1:ENST00000536256.3:ENST00000643556.1:ENST00000629385.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	94	2	1.52721	2.706655	3.8861	0.0417858	1.80108e-4	0.147075	0.0116696
chr10	50357231	50357330	4618017	0	-	0.30303	(0.28,0.32]	chr10	425422	125	INTRON	INTRON	SGMS1	ENSG00000198964.14	ENST00000429490.5:ENST00000361781.7:ENST00000619438.4:ENST00000492601.2:ENST00000609445.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	66	2	2.28998	2.70665	3.12332	0.0166401	0.00698537	0.110511	0.0718189
chr2	110662289	110662389	1206703	0	-	0.33	(0.32,0.35]	chr2	128693	3	SS3_PROX	SS3_PROX:INTRON	BUB1	ENSG00000169679.15	ENST00000302759.11:ENST00000535254.6:ENST00000409311.5:ENST00000466333.5:ENST00000666956.1:ENST00000465029.5:ENST00000477481.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	45	2	2.4458	2.70663	2.96746	0.0425977	0.00815799	0.148082	0.0810802
chr12	118380929	118381028	5234443	0	+	0.525253	(0.515,0.57]	chr12	496607	3	INTRON	INTRON	SUDS3	ENSG00000111707.12	ENST00000543473.2	protein_coding	protein_coding	protein_coding	protein_coding	6	82	2	2.38494	2.706565	3.02819	0.00164178	7.81057e-4	0.0373835	0.0257168
chr2	26044680	26044780	713205	0	+	0.49	(0.476,0.515]	chr2	82440	20	INTRON	INTRON	RAB10	ENSG00000084733.11	ENST00000264710.5:ENST00000495146.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	69	2	2.53419	2.70649	2.87879	0.00999149	0.00251905	0.0879541	0.0446195
chr14	69767558	69767637	5777161	0	+	0.64557	(0.57,1]	chr14	547341	2	SS5_PROX	SS5_PROX:INTRON	SRSF5	ENSG00000100650.16	ENST00000553521.5:ENST00000554465.5:ENST00000394366.6:ENST00000553369.5:ENST00000553548.5:ENST00000557435.1:ENST00000557154.6:ENST00000553635.5:ENST00000556184.5:ENST00000557460.5:ENST00000556587.5:ENST00000555547.5:ENST00000556436.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	53	2	2.64903	2.706295	2.76356	9.85026e-4	5.18582e-4	0.0288488	0.0209322
chr5	54329211	54329311	2353913	0	+	0.46	(0.44,0.476]	chr5	227055	59	INTRON	INTRON	LINC01033	ENSG00000249069.8	ENST00000665899.1:ENST00000653566.1:ENST00000655801.1:ENST00000654906.1:ENST00000667636.1:ENST00000665869.1:ENST00000664079.1:ENST00000659703.1:ENST00000662351.1:ENST00000523194.7:ENST00000665795.1:ENST00000667992.1:ENST00000662022.1:ENST00000657771.1:ENST00000517934.1	lncRNA	lncRNA	lncRNA	lncRNA	3	53	2	2.14573	2.70621	3.26669	0.0238593	0.00305435	0.129075	0.0493883
chr19	19425615	19425715	7035545	0	+	0.6	(0.57,1]	chr19	701433	192	INTRON	INTRON	GATAD2A	ENSG00000167491.18	ENST00000494516.6:ENST00000360315.7:ENST00000609040.5:ENST00000417582.6:ENST00000683918.1:ENST00000448576.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	51	2	2.39556	2.70614	3.01672	0.00141347	5.94133e-4	0.0340865	0.0221865
chr2	191692364	191692464	960510	0	+	0.31	(0.28,0.32]	chr2	104307	67	UTR3	UTR3:EXON_MRNA	NABP1	ENSG00000173559.15	ENST00000674262.1:ENST00000674360.1:ENST00000674406.1:ENST00000674414.1:ENST00000410026.7:ENST00000674172.1:ENST00000674187.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	68	2	2.4387	2.706015	2.97333	0.0126802	0.00857834	0.0926667	0.083729
chr22	23209943	23210043	7483501	0	+	0.31	(0.28,0.32]	chr22	763541	102	INTRON	INTRON	BCR	ENSG00000186716.21	ENST00000479188.5:ENST00000359540.7:ENST00000305877.13:ENST00000463770.5:ENST00000487679.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	68	2	2.4387	2.706015	2.97333	0.0126802	0.00857834	0.0926667	0.083729
chr12	111561459	111561558	5412853	0	-	0.373737	(0.35,0.378]	chr12	516939	52	INTRON	INTRON	ATXN2	ENSG00000204842.18	ENST00000642389.2:ENST00000608853.5:ENST00000672613.1:ENST00000673436.1:ENST00000643669.2:ENST00000616825.4:ENST00000389153.10:ENST00000550104.5:ENST00000483311.6:ENST00000672335.1:ENST00000673557.1:ENST00000673283.1:ENST00000673449.1:ENST00000535949.5:ENST00000542287.6:ENST00000644883.1:ENST00000647305.1:ENST00000671792.1:ENST00000392645.6:ENST00000672105.1:ENST00000549455.1:ENST00000548492.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	69	2	1.95579	2.706	3.45621	0.0234538	0.0011842	0.11867	0.031662
chr1	153901980	153902080	557557	0	-	0.5	(0.476,0.515]	chr1	65995	26	INTRON	INTRON	GATAD2B	ENSG00000143614.10	ENST00000368655.5:ENST00000634544.1:ENST00000634408.1:ENST00000634401.1:ENST00000634791.1:ENST00000637331.1:ENST00000636008.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	71	2	1.95469	2.7059	3.45711	0.0115753	0.00140905	0.0962115	0.0340865
chr19	10979393	10979491	7015742	0	+	0.479592	(0.476,0.515]	chr19	697174	12	INTRON	INTRON	SMARCA4	ENSG00000127616.20	ENST00000644737.1:ENST00000642726.1:ENST00000646484.1:ENST00000643549.1:ENST00000643296.1:ENST00000647230.1:ENST00000642628.1:ENST00000646510.1:ENST00000429416.8:ENST00000644760.1:ENST00000344626.10:ENST00000646693.2:ENST00000645460.1:ENST00000541122.6:ENST00000589677.5:ENST00000444061.8:ENST00000590574.6	protein_coding	protein_coding	protein_coding	protein_coding	4	63	2	2.41328	2.7058999999999997	2.99852	0.0077575	0.00355364	0.0757402	0.0547657
chr2	60780440	60780523	785380	0	+	0.457831	(0.44,0.476]	chr2	88312	3	SS3_PROX	SS3_PROX:INTRON	PAPOLG	ENSG00000115421.13	ENST00000496283.5:ENST00000414060.5:ENST00000238714.8:ENST00000453839.5:ENST00000483370.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	52	2	2.54944	2.705875	2.86231	0.012214	0.00591346	0.0910127	0.0694038
chr19	34453759	34453859	7053383	0	+	0.44	(0.408,0.44]	chr19	703544	1	SS3_PROX	SS3_PROX:INTRON	UBA2	ENSG00000126261.13	ENST00000586313.1:ENST00000246548.9:ENST00000439527.6:ENST00000591016.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	72	2	2.12303	2.705775	3.28852	0.00586883	0.00287185	0.0690758	0.0474836
chr4	99949570	99949662	2209633	0	-	0.413043	(0.408,0.44]	chr4	216416	3	EXON_MRNA	EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	H2AZ1	ENSG00000164032.12	ENST00000511348.1:ENST00000511203.1:ENST00000651623.1:ENST00000296417.6:ENST00000511319.5:ENST00000529158.5:ENST00000527366.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	11	174	2	2.06457	2.705745	3.34692	0.00275016	6.75053e-6	0.0469265	0.0018406
chr17	27306184	27306281	6580659	0	+	0.391753	(0.378,0.408]	chr17	639622	9	INTRON	INTRON	WSB1	ENSG00000109046.15	ENST00000467843.6:ENST00000579733.5:ENST00000583193.5:ENST00000262394.7:ENST00000427287.6:ENST00000581185.5:ENST00000348811.6:ENST00000582208.1:ENST00000584114.1:ENST00000487603.5:ENST00000583096.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	96	2	2.26244	2.70568	3.14892	0.00499984	0.00112365	0.0617433	0.0308177
chr15	48772386	48772486	6166288	0	-	0.31	(0.28,0.32]	chr15	587634	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	CEP152	ENSG00000103995.14	ENST00000380950.7:ENST00000399334.7:ENST00000325747.9:ENST00000559398.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	67	2	2.33381	2.7056250000000004	3.07744	0.0174951	0.00604536	0.104863	0.0700813
chr1	246930528	246930628	681949	0	-	0.41	(0.408,0.44]	chr1	80043	118	INTRON	INTRON	AHCTF1	ENSG00000153207.16	ENST00000648844.2:ENST00000326225.3:ENST00000366508.5	protein_coding	protein_coding	protein_coding	protein_coding	8	117	2	2.08878	2.705365	3.32195	0.00260464	2.54513e-4	0.0470772	0.0147895
chr5	96775538	96775634	2682670	0	-	0.395833	(0.378,0.408]	chr5	253577	12	UTR3	UTR3:EXON_MRNA:INTRON	ERAP1	ENSG00000164307.13	ENST00000296754.7:ENST00000443439.7	protein_coding	protein_coding	protein_coding	protein_coding	3	54	2	2.56408	2.705355	2.84663	0.0133954	0.00566993	0.0946278	0.0678837
chr22	18575887	18575986	7551112	0	-	0.575758	(0.57,1]	chr22	771833	13	INTRON	INTRON	PI4KAP1	ENSG00000274602.5	ENST00000611748.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	4	34	2	2.09207	2.70533	3.31859	0.0121228	0.00137292	0.090965	0.0340241
chr11	86006542	86006642	5014204	0	-	0.54	(0.515,0.57]	chr11	472970	27	INTRON	INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000630913.2:ENST00000528398.5:ENST00000356360.9:ENST00000534412.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	93	2	1.72014	2.70532	3.6905	0.0185015	1.45191e-5	0.108861	0.0028542
chr17	43534485	43534581	6777322	0	-	0.447917	(0.44,0.476]	chr17	667993	1	INTRON	INTRON	ETV4	ENSG00000175832.13	ENST00000538265.5:ENST00000319349.10:ENST00000393664.6:ENST00000545954.5:ENST00000545089.5:ENST00000591713.5:ENST00000590236.5:ENST00000585508.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	40	2	2.49112	2.70531	2.9195	0.0315968	0.0102021	0.144381	0.0850389
chr2	69384671	69384771	1147285	0	-	0.32	(0.28,0.32]	chr2	122530	102	INTRON	INTRON	GFPT1	ENSG00000198380.13	ENST00000361060.5:ENST00000357308.9:ENST00000674507.1:ENST00000674438.1:ENST00000494201.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	50	2	2.18975	2.705245	3.22074	0.0776042	0.00362783	0.196285	0.055479
chr5	150018897	150018997	2518847	0	+	0.31	(0.28,0.32]	chr5	240787	2	SS5_PROX	SS5_PROX:INTRON	HMGXB3	ENSG00000113716.13	ENST00000613459.4:ENST00000503427.5:ENST00000502717.6	protein_coding	protein_coding	protein_coding	protein_coding	2	50	2	2.18975	2.705245	3.22074	0.0776042	0.00362783	0.196285	0.055479
chr17	30766688	30766788	6590157	0	+	0.32	(0.28,0.32]	chr17	640875	1	SS5_PROX	SS5_PROX:INTRON	SUZ12P1	ENSG00000264538.7	ENST00000578070.5:ENST00000579526.5:ENST00000690405.1:ENST00000578195.6:ENST00000582557.5:ENST00000582329.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	4	79	2	2.28714	2.7052300000000002	3.12332	0.00698537	0.00696126	0.0754576	0.0718189
chr1	35275172	35275272	68352	0	+	0.24	[0,0.28]	chr1	8717	57	INTRON	INTRON	ZMYM4	ENSG00000146463.12	ENST00000314607.11:ENST00000441447.1	protein_coding	protein_coding	protein_coding	protein_coding	2	56	2	2.27119	2.705225	3.13926	0.070351	0.00563224	0.184298	0.0678837
chr1	61100874	61100974	127576	0	+	0.31	(0.28,0.32]	chr1	14770	123	EXON_MRNA	EXON_MRNA:INTRON	NFIA	ENSG00000162599.17	ENST00000371191.5:ENST00000664495.1:ENST00000476646.5:ENST00000407417.7:ENST00000479364.1:ENST00000371189.8:ENST00000670151.1:ENST00000664149.1:ENST00000662015.1:ENST00000403491.8:ENST00000371187.7:ENST00000485903.6:ENST00000371185.6:ENST00000371184.6:ENST00000603233.2:ENST00000496712.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	79	2	2.1076	2.705115	3.30263	0.0133585	0.0038504	0.100772	0.0542786
chr11	13689874	13689974	4742518	0	+	0.5	(0.476,0.515]	chr11	439155	199	INTRON	INTRON	FAR1	ENSG00000197601.13	ENST00000354817.8:ENST00000532701.1	protein_coding	protein_coding	protein_coding	protein_coding	3	52	2	2.16377	2.705035	3.2463	0.0243026	0.00262374	0.12011	0.0470772
chr5	126998938	126999038	2714242	0	-	0.48	(0.476,0.515]	chr5	255278	522	INTRON	INTRON	MARCHF3	ENSG00000173926.6	ENST00000308660.6:ENST00000502289.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	52	2	2.16377	2.705035	3.2463	0.0243026	0.00262374	0.12011	0.0470772
chr1	179227840	179227940	593061	0	-	0.54	(0.515,0.57]	chr1	71074	849	INTRON	INTRON	ABL2	ENSG00000143322.21	ENST00000502732.6:ENST00000367623.8:ENST00000507173.5:ENST00000511413.5:ENST00000668691.1:ENST00000392043.4:ENST00000660584.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	60	2	2.67733	2.704955	2.73258	0.00366712	0.00260192	0.0535094	0.0470772
chrX	132060562	132060661	7723330	0	+	0.323232	(0.32,0.35]	chrX	790033	47	INTRON	INTRON	STK26	ENSG00000134602.16	ENST00000354719.10:ENST00000394334.7:ENST00000481105.5:ENST00000394335.6:ENST00000496850.1	protein_coding	protein_coding	protein_coding	protein_coding	5	100	2	2.4961	2.704815	2.91353	0.00967886	3.88987e-4	0.0828038	0.0177751
chr7	127857117	127857217	3404463	0	+	0.22	[0,0.28]	chr7	318146	123	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000468166.5:ENST00000465900.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	56	2	2.63238	2.70477	2.77716	0.0259691	0.022039	0.133676	0.115395
chr3	157152439	157152538	1844623	0	-	0.323232	(0.32,0.35]	chr3	185656	3	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CCNL1	ENSG00000163660.12	ENST00000461804.5:ENST00000295926.8:ENST00000464316.5:ENST00000631619.1:ENST00000475298.5:ENST00000474539.5:ENST00000471247.5:ENST00000470121.5:ENST00000476367.5:ENST00000477127.5:ENST00000479052.5:ENST00000483789.5:ENST00000478454.5:ENST00000479596.5:ENST00000465947.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	83	2	2.02327	2.704695	3.38612	0.00956045	0.00249604	0.0863913	0.0446195
chr15	72487600	72487699	6059293	0	+	0.353535	(0.35,0.378]	chr15	576852	122	INTRON	INTRON	ARIH1	ENSG00000166233.15	ENST00000379887.9:ENST00000570085.5:ENST00000564062.1:ENST00000567762.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	43	2	2.24535	2.70453	3.16371	0.0647516	0.00383956	0.179192	0.0562562
chr16	18875376	18875468	6457582	0	-	0.478261	(0.476,0.515]	chr16	622820	4	UTR3	UTR3:EXON_MRNA:INTRON	SMG1	ENSG00000157106.18	ENST00000446231.7:ENST00000565324.5:ENST00000563235.5:ENST00000561947.5	protein_coding	protein_coding	protein_coding	protein_coding	4	62	2	2.16306	2.70451	3.24596	0.00973468	0.00322919	0.0877284	0.0507087
chr7	127994312	127994411	3405847	0	+	0.424242	(0.408,0.44]	chr7	318184	29	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000486037.1:ENST00000484767.5:ENST00000470723.5:ENST00000467238.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	112	2	1.50345	2.70446	3.90547	0.0138792	2.03612e-4	0.10247	0.0129859
chr21	31684856	31684952	7437334	0	-	0.291667	(0.28,0.32]	chr21	758599	10	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	SCAF4	ENSG00000156304.15	ENST00000286835.12:ENST00000399804.5:ENST00000434667.3:ENST00000467731.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	213	2	2.39276	2.7043150000000002	3.01587	0.00331685	2.36443e-5	0.0512081	0.00380885
chr13	39037242	39037336	5576204	0	-	0.382979	(0.378,0.408]	chr13	533097	1	UTR5	UTR5:EXON_MRNA	PROSER1	ENSG00000120685.20	ENST00000352251.8:ENST00000625998.2:ENST00000418503.1:ENST00000602534.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	101	2	2.18994	2.70431	3.21868	0.00448961	4.53506e-4	0.0612035	0.0196892
chr6	44252855	44252944	2872902	0	+	0.460674	(0.44,0.476]	chr6	272618	2	SS3_PROX	SS3_PROX:INTRON	HSP90AB1	ENSG00000096384.20	ENST00000620073.4:ENST00000353801.7:ENST00000371646.10:ENST00000371554.2	protein_coding	protein_coding	protein_coding	protein_coding	16	264	2	2.28217	2.70425	3.12633	3.27518e-4	6.87637e-6	0.0160995	0.00196831
chr8	140526748	140526848	4075448	0	-	0.51	(0.476,0.515]	chr8	370170	67	UTR3	UTR3:EXON_MRNA	AGO2	ENSG00000123908.12	ENST00000220592.10	protein_coding	protein_coding	protein_coding	protein_coding	6	79	2	1.73294	2.70419	3.67544	0.0174121	5.51624e-4	0.112632	0.0216014
chrX	73961446	73961544	7682271	0	+	0.336735	(0.32,0.35]	chrX	786628	25	INTRON	INTRON	JPX	ENSG00000225470.8	ENST00000664637.1:ENST00000639185.1:ENST00000655090.1:ENST00000640437.1:ENST00000660546.1:ENST00000667886.1:ENST00000660840.1:ENST00000657179.1:ENST00000670506.1:ENST00000657910.1:ENST00000662120.1:ENST00000671207.1:ENST00000659254.1:ENST00000656624.1:ENST00000667573.1:ENST00000660856.1:ENST00000660836.1:ENST00000668590.1:ENST00000658649.1:ENST00000414209.6:ENST00000654137.1:ENST00000670994.1:ENST00000653479.1:ENST00000602772.5:ENST00000655879.1:ENST00000657372.1:ENST00000657096.1:ENST00000602985.6:ENST00000670685.1:ENST00000670503.1:ENST00000663027.1:ENST00000654995.1:ENST00000602895.6:ENST00000654374.1:ENST00000660087.1:ENST00000665032.1:ENST00000671336.1:ENST00000671476.1:ENST00000667057.1:ENST00000670192.1:ENST00000670464.1:ENST00000665345.1:ENST00000661546.1:ENST00000662543.1:ENST00000602938.6:ENST00000664295.1:ENST00000654005.1:ENST00000669149.1:ENST00000659852.1:ENST00000656509.1:ENST00000602294.6:ENST00000667294.1:ENST00000663470.1:ENST00000602920.6:ENST00000671021.1:ENST00000659849.1:ENST00000667937.1:ENST00000661130.1:ENST00000654196.1:ENST00000655994.1:ENST00000659373.1:ENST00000662239.1:ENST00000670805.1:ENST00000656263.1:ENST00000653069.1:ENST00000657638.1:ENST00000653808.1:ENST00000653929.1:ENST00000653885.1:ENST00000659023.1:ENST00000602546.5:ENST00000659622.1:ENST00000671518.1:ENST00000670408.1	lncRNA	lncRNA	lncRNA	lncRNA	3	61	2	2.22429	2.704105	3.18392	0.0226421	0.00379806	0.117557	0.0562562
chr3	184364707	184364793	1582710	0	+	0.476744	(0.476,0.515]	chr3	163753	4	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	POLR2H	ENSG00000163882.10	ENST00000456318.6:ENST00000438240.5:ENST00000455712.5:ENST00000430783.5:ENST00000443489.5:ENST00000452961.5:ENST00000429568.1:ENST00000488213.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	52	2	2.10874	2.704065	3.29939	0.0285608	0.00211868	0.12666	0.0425644
chr2	53950082	53950182	1120369	0	-	0.53	(0.515,0.57]	chr2	120102	4	INTRON	INTRON	PSME4	ENSG00000068878.15	ENST00000404125.6:ENST00000389993.7:ENST00000481518.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	45	2	2.57298	2.703995	2.83501	0.0117686	0.00506495	0.0894475	0.0646039
chr9	33819628	33819728	4110248	0	+	0.53	(0.515,0.57]	chr9	374684	13	INTRON	INTRON	UBE2R2	ENSG00000107341.5	ENST00000263228.4	protein_coding	protein_coding	protein_coding	protein_coding	3	45	2	2.57298	2.703995	2.83501	0.0117686	0.00506495	0.0894475	0.0646039
chr7	65045248	65045348	3321444	0	+	0.41	(0.408,0.44]	chr7	308810	63	INTRON	INTRON	CCT6P3	ENSG00000234585.6	ENST00000419314.5:ENST00000426828.5	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript	10	135	2	2.1093	2.70384	3.29838	0.00117016	2.85924e-4	0.0315967	0.0155266
chr15	58712478	58712577	6193142	0	-	0.515152	(0.476,0.515]	chr15	589982	47	INTRON	INTRON	ADAM10	ENSG00000137845.15	ENST00000260408.8:ENST00000402627.5:ENST00000561288.1:ENST00000559053.1:ENST00000558733.5:ENST00000439637.5:ENST00000497846.5:ENST00000558004.1:ENST00000560608.5:ENST00000561149.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	62	2	2.20789	2.70382	3.19975	0.00820497	0.00383299	0.081115	0.0542786
chr1	35912551	35912650	70949	0	+	0.373737	(0.35,0.378]	chr1	9087	51	INTRON	INTRON	AGO1	ENSG00000092847.13	ENST00000373206.5:ENST00000373204.6:ENST00000674426.1:ENST00000674304.1:ENST00000635259.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	43	2	2.57049	2.7037899999999997	2.83709	0.0262669	0.01435	0.133676	0.0966737
chr10	69171760	69171858	4445037	0	+	0.367347	(0.35,0.378]	chr10	410068	6	UTR3	UTR3:EXON_MRNA	VPS26A	ENSG00000122958.15	ENST00000373382.5:ENST00000395098.5:ENST00000263559.11	protein_coding	protein_coding	protein_coding	protein_coding	2	43	2	2.57049	2.7037899999999997	2.83709	0.0262669	0.01435	0.133676	0.0966737
chr20	32533095	32533185	7326395	0	-	0.377778	(0.35,0.378]	chr20	746131	3	SS5_PROX	SS5_PROX:INTRON	NOL4L	ENSG00000197183.15	ENST00000621426.7:ENST00000375678.7:ENST00000201961.6:ENST00000470428.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	43	2	2.57049	2.7037899999999997	2.83709	0.0262669	0.01435	0.133676	0.0966737
chr19	15327236	15327336	7147353	0	-	0.55	(0.515,0.57]	chr19	721965	469	INTRON	INTRON	BRD4	ENSG00000141867.19	ENST00000679869.1:ENST00000360016.9:ENST00000594841.5:ENST00000597315.5:ENST00000601941.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	45	2	2.26012	2.70371	3.1473	0.0160033	0.00397184	0.109464	0.0549214
chr7	97870313	97870409	3579376	0	-	0.322917	(0.32,0.35]	chr7	333301	1	INTRON	INTRON	ASNS:ENSG00000284707	ENSG00000070669.17:ENSG00000284707.2	ENST00000394308.8:ENST00000641784.1:ENST00000641390.1:ENST00000175506.8:ENST00000394309.7:ENST00000437628.5:ENST00000641315.1:ENST00000422745.5:ENST00000455086.5:ENST00000444334.5:ENST00000442734.5:ENST00000437657.5:ENST00000453600.5:ENST00000451771.5:ENST00000414884.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	7	111	2	2.37137	2.70367	3.03597	0.00832487	7.54221e-4	0.0774402	0.0251966
chr2	121649423	121649476	1222390	0	-	0.433962	(0.408,0.44]	chr2	130064	2	UTR5	UTR5:EXON_MRNA	CLASP1	ENSG00000074054.20	ENST00000263710.8:ENST00000397587.7:ENST00000541377.5:ENST00000409078.8:ENST00000455322.6	protein_coding	protein_coding	protein_coding	protein_coding	25	396	2	2.2582	2.703645	3.14909	2.4596e-4	3.96439e-7	0.0144887	3.26637e-4
chr1	28266496	28266595	55585	0	+	0.424242	(0.408,0.44]	chr1	7196	62	INTRON	INTRON	SESN2	ENSG00000130766.5	ENST00000253063.4	protein_coding	protein_coding	protein_coding	protein_coding	9	129	2	2.3683	2.70356	3.03882	9.66897e-4	3.96367e-4	0.0282401	0.0178651
chr2	235510335	235510435	1041498	0	+	0.3	(0.28,0.32]	chr2	111217	151	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	129	2	2.56602	2.703545	2.84107	0.00326427	6.40806e-4	0.0508595	0.0228915
chr2	144491283	144491382	1241517	0	-	0.323232	(0.32,0.35]	chr2	131732	91	INTRON	INTRON	ZEB2	ENSG00000169554.23	ENST00000636471.1:ENST00000627532.3:ENST00000638128.1:ENST00000637304.1:ENST00000636179.1:ENST00000419938.5:ENST00000409487.7:ENST00000636732.2:ENST00000636026.2:ENST00000675069.1:ENST00000689298.1:ENST00000539609.7:ENST00000558170.6:ENST00000303660.8:ENST00000427902.5:ENST00000637267.2:ENST00000392861.6:ENST00000431672.4:ENST00000409211.5:ENST00000465308.5:ENST00000434448.5:ENST00000472146.5:ENST00000461784.3:ENST00000476394.5:ENST00000637591.2:ENST00000479735.1:ENST00000453352.5:ENST00000435831.5:ENST00000444559.5:ENST00000630572.2:ENST00000484313.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	177	2	2.21181	2.703445	3.19508	0.00115858	1.66545e-4	0.0313807	0.0118326
chr1	6535338	6535438	367926	0	-	0.44	(0.408,0.44]	chr1	43209	15	INTRON	INTRON	NOL9	ENSG00000162408.11	ENST00000377705.6:ENST00000464383.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	39	2	2.51492	2.703425	2.89193	0.0329839	0.00950364	0.133816	0.0863579
chr13	112543157	112543257	5651257	0	-	0.42	(0.408,0.44]	chr13	538478	153	INTRON	INTRON	TUBGCP3	ENSG00000126216.15	ENST00000261965.8:ENST00000649778.1:ENST00000375669.7:ENST00000462580.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	39	2	2.51492	2.703425	2.89193	0.0329839	0.00950364	0.133816	0.0863579
chr19	4027547	4027645	7001392	0	+	0.428571	(0.408,0.44]	chr19	694414	31	INTRON	INTRON	PIAS4	ENSG00000105229.7	ENST00000262971.3:ENST00000599999.5:ENST00000600566.5:ENST00000596144.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	39	2	2.51492	2.703425	2.89193	0.0329839	0.00950364	0.133816	0.0863579
chr19	55196321	55196421	7213337	0	-	0.41	(0.408,0.44]	chr19	732657	4	SS5_PROX	SS5_PROX:INTRON	PTPRH	ENSG00000080031.10	ENST00000376350.8:ENST00000263434.5:ENST00000588559.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	39	2	2.51492	2.703425	2.89193	0.0329839	0.00950364	0.133816	0.0863579
chr22	18563424	18563523	7550986	0	-	0.434343	(0.408,0.44]	chr22	771829	105	INTRON	INTRON	PI4KAP1	ENSG00000274602.5	ENST00000612500.4:ENST00000611748.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	2	39	2	2.51492	2.703425	2.89193	0.0329839	0.00950364	0.133816	0.0863579
chr11	130076033	130076133	4885769	0	+	0.39	(0.378,0.408]	chr11	456911	49	INTRON	INTRON	APLP2	ENSG00000084234.18	ENST00000650012.1:ENST00000533616.5:ENST00000532456.5:ENST00000534761.5:ENST00000338167.10:ENST00000528499.5:ENST00000529701.1:ENST00000526330.5:ENST00000534001.1:ENST00000527702.5:ENST00000534582.5:ENST00000529235.5:ENST00000533713.5:ENST00000533618.5:ENST00000533195.5:ENST00000530132.5:ENST00000533532.5:ENST00000263574.9:ENST00000345598.9:ENST00000278756.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	65	2	2.35168	2.70335	3.05502	0.00689519	0.0046563	0.0717484	0.0629753
chr1	19474799	19474899	388802	0	-	0.43	(0.408,0.44]	chr1	46394	251	INTRON	INTRON	CAPZB	ENSG00000077549.19	ENST00000264202.8:ENST00000264203.7:ENST00000375142.5:ENST00000482808.2:ENST00000674449.1:ENST00000674390.1:ENST00000375144.6:ENST00000674432.1:ENST00000433834.5:ENST00000459967.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	39	2	2.58624	2.7033300000000002	2.82042	0.0273686	0.0120121	0.123904	0.0962115
chr13	114286826	114286925	5550881	0	+	0.414141	(0.408,0.44]	chr13	530564	3	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	UPF3A	ENSG00000169062.15	ENST00000375299.8:ENST00000351487.5:ENST00000484246.5:ENST00000480362.5:ENST00000474056.5:ENST00000493727.5:ENST00000619079.1:ENST00000481131.5:ENST00000479712.1:ENST00000475218.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	39	2	2.58624	2.7033300000000002	2.82042	0.0273686	0.0120121	0.123904	0.0962115
chr4	39944650	39944750	2131872	0	-	0.43	(0.408,0.44]	chr4	210242	161	INTRON	INTRON	PDS5A	ENSG00000121892.15	ENST00000303538.13:ENST00000503396.5	protein_coding	protein_coding	protein_coding	protein_coding	2	39	2	2.58624	2.7033300000000002	2.82042	0.0273686	0.0120121	0.123904	0.0962115
chr16	11910705	11910805	6446359	0	-	0.34	(0.32,0.35]	chr16	621130	67	INTRON	INTRON	GSPT1	ENSG00000103342.13	ENST00000434724.7:ENST00000439887.6:ENST00000420576.6:ENST00000568849.5:ENST00000562169.1	protein_coding	protein_coding	protein_coding	protein_coding	7	139	2	2.35389	2.70329	3.05269	0.00241005	3.33917e-4	0.0453511	0.0169431
chr17	61827643	61827743	6808575	0	-	0.59	(0.57,1]	chr17	672605	185	INTRON	INTRON	BRIP1	ENSG00000136492.10	ENST00000259008.7:ENST00000682755.1:ENST00000682453.1:ENST00000683039.1:ENST00000682989.1:ENST00000682589.1:ENST00000683235.1:ENST00000682477.1:ENST00000684584.1:ENST00000577598.5:ENST00000682066.1:ENST00000584322.2:ENST00000683381.1:ENST00000579028.2:ENST00000682611.1:ENST00000683692.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	43	2	1.77528	2.70326	3.63124	0.0141212	2.87208e-4	0.0959618	0.0150568
chr10	21629037	21629137	4405370	0	+	0.43	(0.408,0.44]	chr10	406487	39	INTRON	INTRON	MLLT10	ENSG00000078403.17	ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000651298.1:ENST00000377059.7:ENST00000652258.1:ENST00000651382.1:ENST00000438473.6:ENST00000650921.1:ENST00000651405.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	63	2	2.3494	2.7032249999999998	3.05705	0.00658331	0.00462504	0.0701901	0.062717
chr15	92977447	92977547	6104494	0	+	0.36	(0.35,0.378]	chr15	581523	21	INTRON	INTRON	CHD2	ENSG00000173575.22	ENST00000626874.2:ENST00000394196.9:ENST00000635856.1:ENST00000637572.1:ENST00000636881.1:ENST00000628118.1:ENST00000625463.1:ENST00000636306.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	69	2	1.92704	2.703185	3.47933	0.0228255	0.0015613	0.125469	0.0360352
chr4	126470240	126470340	2235411	0	-	0.26	[0,0.28]	chr4	219023	47	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	8	141	2	2.04141	2.70315	3.36489	0.00388509	0.00363644	0.055602	0.0544269
chr19	8459070	8459170	7010905	0	+	0.47	(0.44,0.476]	chr19	696143	31	INTRON	INTRON	HNRNPM	ENSG00000099783.12	ENST00000348943.7:ENST00000597813.5:ENST00000600092.5:ENST00000325495.9:ENST00000600806.5:ENST00000620401.4:ENST00000594907.5:ENST00000596984.5:ENST00000601645.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	93	2	1.59515	2.70308	3.81101	0.0165796	3.0729e-4	0.110511	0.0161362
chr17	51025444	51025543	6796054	0	-	0.313131	(0.28,0.32]	chr17	670985	37	INTRON	INTRON	SPAG9	ENSG00000008294.22	ENST00000262013.12:ENST00000510283.5:ENST00000505279.5:ENST00000357122.8:ENST00000514613.5:ENST00000505173.5:ENST00000576492.1:ENST00000510855.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	49	2	2.32871	2.703075	3.07744	0.0581621	0.00604536	0.167723	0.0700813
chrX	54562997	54563097	7664943	0	+	0.26	[0,0.28]	chrX	784797	25	UTR3	UTR3:EXON_MRNA:INTRON	GNL3L	ENSG00000130119.17	ENST00000674498.1:ENST00000360845.3	protein_coding	protein_coding	protein_coding	protein_coding	5	103	2	2.0412	2.703045	3.36489	0.0106194	0.00388509	0.0914726	0.0544269
chr6	7109102	7109202	2798376	0	+	0.67	(0.57,1]	chr6	263722	4	SS5_PROX	SS5_PROX:INTRON	RREB1	ENSG00000124782.21	ENST00000379933.7:ENST00000491191.5:ENST00000471433.5:ENST00000379938.7:ENST00000467782.5:ENST00000349384.10:ENST00000334984.10:ENST00000475946.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	39	2	1.71424	2.70296	3.69168	0.0279017	2.1608e-4	0.137011	0.0134537
chr1	66934404	66934503	139531	0	+	0.474747	(0.44,0.476]	chr1	15646	12	INTRON	INTRON	MIER1	ENSG00000198160.15	ENST00000355977.10:ENST00000371018.7:ENST00000357692.6:ENST00000371016.5:ENST00000371014.5:ENST00000371012.6:ENST00000401041.6:ENST00000355356.3:ENST00000401042.7:ENST00000479067.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	39	2	2.38219	2.702925	3.02366	0.045456	0.00603307	0.149888	0.0700813
chr11	103077118	103077218	5026424	0	-	0.55	(0.515,0.57]	chr11	473935	102	INTRON	INTRON	DCUN1D5	ENSG00000137692.12	ENST00000260247.10:ENST00000527260.5:ENST00000531571.5:ENST00000531543.1:ENST00000529281.5:ENST00000529294.5:ENST00000527576.5:ENST00000527779.1:ENST00000583974.1:ENST00000525420.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	139	2	2.6985	2.70287	2.70724	1.74501e-4	1.37652e-4	0.01215	0.010101
chr8	94837962	94838062	3800268	0	+	0.24	[0,0.28]	chr8	352364	1	SS3_PROX	SS3_PROX:INTRON	INTS8	ENSG00000164941.14	ENST00000523731.6:ENST00000524333.5:ENST00000523321.5:ENST00000343161.8:ENST00000523206.5:ENST00000520526.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	90	2	2.28786	2.7027799999999997	3.1177	0.00849154	0.00782185	0.0788675	0.0778788
chr17	49710331	49710423	6793604	0	-	0.293478	(0.28,0.32]	chr17	670370	1	UTR3	UTR3:EXON_MRNA	FAM117A	ENSG00000121104.8	ENST00000240364.7	protein_coding	protein_coding	protein_coding	protein_coding	3	66	2	2.14002	2.702765	3.26551	0.0304107	0.0030714	0.130461	0.0509893
chr15	89247029	89247128	6095759	0	+	0.464646	(0.44,0.476]	chr15	580074	8	INTRON	INTRON	FANCI	ENSG00000140525.20	ENST00000674831.1:ENST00000300027.12:ENST00000568670.5:ENST00000567891.5:ENST00000310775.12:ENST00000696717.1:ENST00000676003.1:ENST00000565255.5:ENST00000564920.5:ENST00000696718.1:ENST00000447611.6:ENST00000570110.1:ENST00000696719.1:ENST00000567996.5:ENST00000563250.5:ENST00000565522.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	96	2	2.06341	2.70275	3.34209	0.00871005	1.47653e-4	0.0788605	0.0105526
chr11	65975395	65975495	4807555	0	+	0.45	(0.44,0.476]	chr11	447176	72	INTRON	INTRON	SART1	ENSG00000175467.15	ENST00000312397.10	protein_coding	protein_coding	protein_coding	protein_coding	6	96	2	2.12263	2.7027200000000002	3.28281	0.00692375	2.0352e-4	0.0718189	0.0124395
chr2	99486125	99486224	1189843	0	-	0.262626	[0,0.28]	chr2	127721	208	INTRON	INTRON	REV1	ENSG00000135945.10	ENST00000393445.7:ENST00000258428.8:ENST00000413697.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	90	2	2.09841	2.70268	3.30695	0.0151026	0.00469836	0.108435	0.0600108
chr9	120784593	120784692	4335376	0	-	0.50505	(0.476,0.515]	chr9	398253	57	INTRON	INTRON	FBXW2	ENSG00000119402.18	ENST00000684405.1:ENST00000684001.1:ENST00000684047.1:ENST00000608872.6:ENST00000453291.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	71	2	2.07116	2.70266	3.33416	0.00731321	0.00230489	0.076234	0.0428247
chr3	100068585	100068685	1464414	0	+	0.32	(0.28,0.32]	chr3	153516	169	INTRON	INTRON	CMSS1	ENSG00000184220.12	ENST00000463526.1:ENST00000421999.8:ENST00000491299.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	49	2	2.67453	2.70265	2.73077	0.0220748	0.021289	0.123318	0.115395
chr11	66791733	66791832	4811819	0	+	0.383838	(0.378,0.408]	chr11	447962	31	INTRON	INTRON	C11orf80	ENSG00000173715.18	ENST00000524551.5:ENST00000525908.6:ENST00000540737.7:ENST00000527634.5:ENST00000527368.5:ENST00000531400.6:ENST00000642265.1:ENST00000532565.6:ENST00000525449.6:ENST00000360962.10:ENST00000532727.5:ENST00000532089.5:ENST00000526260.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	146	2	2.57695	2.70263	2.82831	7.49551e-4	1.97416e-4	0.0251179	0.0122531
chr11	77757672	77757772	4995344	0	-	0.36	(0.35,0.378]	chr11	472041	102	INTRON	INTRON	RSF1	ENSG00000048649.14	ENST00000308488.11:ENST00000528095.5:ENST00000534794.1:ENST00000440064.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	117	2	1.95039	2.702515	3.45464	0.0095436	9.07166e-5	0.082068	0.00796627
chr20	47282717	47282805	7348763	0	-	0.352273	(0.35,0.378]	chr20	749300	1	INTRON	INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000467200.6:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000468376.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	17	297	2	2.64734	2.70251	2.75768	1.25439e-4	1.93176e-5	0.0100976	0.00337704
chr3	47679842	47679936	1684039	0	-	0.297872	(0.28,0.32]	chr3	172034	12	INTRON	INTRON	SMARCC1	ENSG00000173473.11	ENST00000254480.10:ENST00000425518.5:ENST00000462198.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	67	2	2.13651	2.702505	3.2685	0.0265696	0.00432734	0.134088	0.0579331
chr12	120166812	120166911	5432963	0	-	0.464646	(0.44,0.476]	chr12	519266	17	INTRON	INTRON	GCN1	ENSG00000089154.11	ENST00000300648.7:ENST00000551549.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	39	2	2.66433	2.70248	2.74063	0.0194358	0.0176095	0.119831	0.105143
chr2	167855916	167856016	1258359	0	-	0.29	(0.28,0.32]	chr2	133322	403	INTRON	INTRON	B3GALT1-AS1	ENSG00000235335.3	ENST00000430546.2:ENST00000657553.1:ENST00000670221.1:ENST00000436982.2	lncRNA	lncRNA	lncRNA	lncRNA	4	79	2	2.06884	2.7024	3.33596	0.0152581	0.00342993	0.108569	0.0517761
chr2	111494056	111494156	1211802	0	-	0.22	[0,0.28]	chr2	128944	1	SS5_PROX	SS5_PROX:INTRON	MIR4435-2HG	ENSG00000172965.17	ENST00000645030.2:ENST00000642191.1:ENST00000673798.1:ENST00000645051.2:ENST00000673649.1:ENST00000669658.1:ENST00000669917.1:ENST00000661559.1:ENST00000653687.1:ENST00000667670.1:ENST00000609220.2:ENST00000656760.1:ENST00000609902.6:ENST00000666683.1:ENST00000674070.1:ENST00000662335.1:ENST00000664422.1:ENST00000673775.1:ENST00000674092.1:ENST00000673958.1:ENST00000658936.1:ENST00000662635.1:ENST00000666204.1:ENST00000659458.1:ENST00000664443.1:ENST00000670295.1:ENST00000661655.1:ENST00000666390.1:ENST00000659079.1:ENST00000660442.1:ENST00000664009.1:ENST00000439362.6:ENST00000654473.1:ENST00000664999.1:ENST00000673728.1:ENST00000659791.1:ENST00000666144.1:ENST00000659933.1:ENST00000670715.1:ENST00000653568.1:ENST00000643013.1:ENST00000673866.1:ENST00000443467.6:ENST00000669875.1:ENST00000673653.1:ENST00000673988.1:ENST00000661945.1:ENST00000669515.1:ENST00000431385.6:ENST00000656416.1:ENST00000674037.1:ENST00000432818.5:ENST00000674013.1:ENST00000444301.5:ENST00000673964.1:ENST00000673845.1:ENST00000673756.1:ENST00000673960.1:ENST00000673804.1:ENST00000673632.1:ENST00000453478.2:ENST00000673937.1:ENST00000673654.1:ENST00000409569.2:ENST00000674087.1:ENST00000419736.5:ENST00000673840.1:ENST00000674045.1:ENST00000643766.1:ENST00000308604.5:ENST00000604981.5:ENST00000673894.1:ENST00000441075.1:ENST00000673878.1:ENST00000673668.1:ENST00000432268.1	lncRNA	lncRNA	lncRNA	lncRNA	5	105	2	1.71089	2.7022399999999998	3.69359	0.0318277	0.00122246	0.14477	0.0320622
chr16	23898050	23898150	6324381	0	+	0.51	(0.476,0.515]	chr16	605701	43	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000498739.1	protein_coding	protein_coding	protein_coding	protein_coding	9	139	2	2.0632	2.70212	3.34104	0.00364537	2.6624e-5	0.0535094	0.00407289
chr14	23066203	23066300	5842677	0	-	0.350515	(0.35,0.378]	chr14	555595	3	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	ACIN1	ENSG00000100813.15	ENST00000605057.6:ENST00000557515.5:ENST00000262710.5:ENST00000457657.5:ENST00000357481.6:ENST00000338631.10:ENST00000473758.5:ENST00000397341.7:ENST00000555053.5:ENST00000555566.1:ENST00000557039.1:ENST00000555807.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	70	2	1.56287	2.702035	3.8412	0.0697648	1.97447e-4	0.184298	0.0122531
chr19	8481956	8482056	7011148	0	+	0.45	(0.44,0.476]	chr19	696200	4	SS5_PROX	SS5_PROX:INTRON	HNRNPM	ENSG00000099783.12	ENST00000348943.7:ENST00000600092.5:ENST00000325495.9:ENST00000600806.5:ENST00000620401.4:ENST00000594907.5:ENST00000597270.1:ENST00000597081.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	11	161	2	2.02923	2.702035	3.37484	0.0017848	3.80432e-5	0.0392749	0.00525714
chr5	28968270	28968370	2331435	0	+	0.36	(0.35,0.378]	chr5	225139	411	INTRON	INTRON	LINC02109	ENSG00000259786.7	ENST00000658190.1	lncRNA	lncRNA	lncRNA	lncRNA	3	58	2	2.10859	2.7019450000000003	3.2953	0.0272722	0.0031465	0.136494	0.0500431
chr11	62645461	62645561	4960362	0	-	0.52	(0.515,0.57]	chr11	466618	50	INTRON	INTRON	GANAB	ENSG00000089597.18	ENST00000346178.8:ENST00000532402.5:ENST00000356638.8:ENST00000540933.5:ENST00000648273.1:ENST00000534779.5:ENST00000534613.5:ENST00000525994.1:ENST00000526210.1:ENST00000526392.1:ENST00000529737.5:ENST00000534419.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	72	2	2.41022	2.70169	2.99316	0.00332441	9.21623e-4	0.0528673	0.0278396
chr7	4769546	4769646	3270798	0	+	0.48	(0.476,0.515]	chr7	303926	72	UTR3	UTR3:EXON_MRNA	FOXK1	ENSG00000164916.11	ENST00000328914.5	protein_coding	protein_coding	protein_coding	protein_coding	7	86	2	1.62997	2.701655	3.77334	0.018725	3.52709e-4	0.117523	0.0174637
chr7	107087183	107087283	3377592	0	+	0.24	[0,0.28]	chr7	316248	165	INTRON	INTRON	PRKAR2B	ENSG00000005249.13	ENST00000265717.5:ENST00000393613.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	55	2	2.54624	2.7015700000000002	2.8569	0.0388449	0.013822	0.143072	0.10247
chr1	89559832	89559931	157752	0	+	0.363636	(0.35,0.378]	chr1	17177	4	INTRON	INTRON	LRRC8B	ENSG00000197147.15	ENST00000330947.7:ENST00000439853.6:ENST00000449440.5:ENST00000640258.1:ENST00000639264.1	protein_coding	protein_coding	protein_coding	protein_coding	2	42	2	2.53856	2.701535	2.86451	0.0326077	0.0109111	0.133687	0.0923273
chr1	212874512	212874611	310005	0	+	0.373737	(0.35,0.378]	chr1	35804	13	INTRON	INTRON	FLVCR1	ENSG00000162769.13	ENST00000366971.9:ENST00000419102.1:ENST00000474693.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	42	2	2.53856	2.701535	2.86451	0.0326077	0.0109111	0.133687	0.0923273
chr3	168088150	168088250	1854862	0	-	0.36	(0.35,0.378]	chr3	186419	394	INTRON	INTRON	GOLIM4	ENSG00000173905.9	ENST00000470487.6:ENST00000309027.4	protein_coding	protein_coding	protein_coding	protein_coding	2	42	2	2.53856	2.701535	2.86451	0.0326077	0.0109111	0.133687	0.0923273
chr8	38337104	38337204	3936971	0	-	0.36	(0.35,0.378]	chr8	360808	4	SS5_PROX	SS5_PROX:INTRON	NSD3	ENSG00000147548.17	ENST00000317025.13:ENST00000433384.6:ENST00000527502.5:ENST00000316985.7	protein_coding	protein_coding	protein_coding	protein_coding	2	42	2	2.53856	2.701535	2.86451	0.0326077	0.0109111	0.133687	0.0923273
chr7	129054150	129054250	3636574	0	-	0.45	(0.44,0.476]	chr7	338149	1	SS5_PROX	SS5_PROX:INTRON	TNPO3	ENSG00000064419.14	ENST00000627585.2:ENST00000265388.10:ENST00000471234.5:ENST00000482320.5:ENST00000471166.1	protein_coding	protein_coding	protein_coding	protein_coding	4	70	2	2.38519	2.701505	3.01782	0.012193	7.8136e-4	0.0910127	0.0257169
chrX	3917399	3917499	7747770	0	-	0.59	(0.57,1]	chrX	793160	108	INTRON	INTRON	ENSG00000285756	ENSG00000285756.2	ENST00000650538.1:ENST00000381106.4	lncRNA	lncRNA	lncRNA	lncRNA	3	30	2	2.66801	2.7015000000000002	2.73499	0.0169968	0.00237434	0.110899	0.0438057
chr1	19221439	19221538	386904	0	-	0.494949	(0.476,0.515]	chr1	46157	7	EXON_MRNA	EXON_MRNA:INTRON	EMC1	ENSG00000127463.16	ENST00000477853.6:ENST00000688219.1:ENST00000690732.1:ENST00000690451.1:ENST00000688667.1:ENST00000685099.1:ENST00000685594.1:ENST00000690823.1:ENST00000692207.1:ENST00000688332.1:ENST00000693007.1:ENST00000688918.1:ENST00000691945.1:ENST00000375199.7:ENST00000480380.1:ENST00000375208.7:ENST00000486405.2:ENST00000486238.1:ENST00000494770.7:ENST00000462505.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	53	2	2.45598	2.70145	2.94692	0.00945755	0.00794331	0.0817766	0.0797304
chr10	22667066	22667166	4580027	0	-	0.35	(0.32,0.35]	chr10	422040	48	INTRON	INTRON	PIP4K2A	ENSG00000150867.14	ENST00000376573.9:ENST00000545335.5:ENST00000605011.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	45	2	2.37794	2.70132	3.0247	0.0498601	0.00671684	0.156383	0.0738715
chr15	40468044	40468140	6002340	0	+	0.322917	(0.32,0.35]	chr15	570818	21	UTR3	UTR3:EXON_MRNA	BAHD1	ENSG00000140320.12	ENST00000561234.5:ENST00000416165.6:ENST00000560846.1	protein_coding	protein_coding	protein_coding	protein_coding	2	45	2	2.37794	2.70132	3.0247	0.0498601	0.00671684	0.156383	0.0738715
chr7	152401746	152401846	3680951	0	-	0.44	(0.408,0.44]	chr7	341660	427	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000682301.1:ENST00000452749.2:ENST00000680867.1:ENST00000683800.1:ENST00000684278.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	90	2	2.11401	2.7012650000000002	3.28852	0.00287185	0.00230448	0.0474836	0.0440636
chr8	116850128	116850226	4034395	0	-	0.346939	(0.32,0.35]	chr8	368106	12	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	RAD21	ENSG00000164754.16	ENST00000297338.7:ENST00000517485.6:ENST00000519837.6:ENST00000522699.2:ENST00000687358.1:ENST00000689124.1:ENST00000520992.6:ENST00000517749.2:ENST00000687122.1:ENST00000685972.1:ENST00000687902.1:ENST00000690166.1:ENST00000689154.1:ENST00000523986.6:ENST00000518055.1:ENST00000523547.2:ENST00000686622.1:ENST00000688033.1:ENST00000690189.1:ENST00000689504.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	89	2	2.5542	2.70116	2.84812	0.0147575	9.3945e-4	0.0983813	0.0280187
chr18	9947689	9947786	6873688	0	+	0.42268	(0.408,0.44]	chr18	680899	2	EXON_MRNA	EXON_MRNA:INTRON	VAPA	ENSG00000101558.14	ENST00000400000.7:ENST00000340541.4:ENST00000584796.5:ENST00000583879.5:ENST00000583475.1:ENST00000577539.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	76	2	2.50424	2.7010949999999996	2.89795	0.0110735	0.00101099	0.0873897	0.0293364
chr17	27105311	27105411	6579878	0	+	0.29	(0.28,0.32]	chr17	639586	85	INTRON	INTRON	ENSG00000285822	ENSG00000285822.1	ENST00000649401.1	lncRNA	lncRNA	lncRNA	lncRNA	6	122	2	2.43316	2.7010300000000003	2.9689	0.00194987	0.00186476	0.0400465	0.0399675
chr5	32390637	32390737	2598776	0	-	0.4	(0.378,0.408]	chr5	246911	2	SS3_PROX	SS3_PROX:INTRON	ZFR	ENSG00000056097.16	ENST00000265069.13	protein_coding	protein_coding	protein_coding	protein_coding	7	121	2	2.1245	2.700925	3.27735	0.00724232	4.08558e-5	0.0729826	0.00519615
chr17	46555555	46555655	6786489	0	-	0.44	(0.408,0.44]	chr17	669357	29	UTR3	UTR3:EXON_MRNA:INTRON	ARL17A	ENSG00000185829.18	ENST00000445552.6:ENST00000622488.6:ENST00000329240.10:ENST00000573185.5:ENST00000570550.5:ENST00000336125.6	protein_coding	protein_coding	protein_coding	protein_coding	4	74	2	2.39162	2.70086	3.0101	0.0105837	0.00109848	0.0911864	0.0304585
chr11	667563	667663	4889199	0	-	0.47	(0.44,0.476]	chr11	457709	74	INTRON	INTRON	DEAF1	ENSG00000177030.19	ENST00000382409.4:ENST00000527170.5:ENST00000685854.1:ENST00000683307.1:ENST00000528864.6:ENST00000525626.6:ENST00000682936.1:ENST00000690068.1:ENST00000692634.1:ENST00000687329.1:ENST00000686001.1:ENST00000689835.1:ENST00000525904.5:ENST00000530813.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	52	2	2.59888	2.700815	2.80275	0.0146513	0.00487719	0.0982604	0.0640618
chr17	16441460	16441553	6562673	0	+	0.397849	(0.378,0.408]	chr17	637923	2	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	SNHG29	ENSG00000175061.19	ENST00000475947.7:ENST00000584177.5:ENST00000487066.6:ENST00000580180.6:ENST00000660020.1:ENST00000665646.1:ENST00000481898.6:ENST00000660419.1:ENST00000668333.1:ENST00000667979.2:ENST00000663781.1:ENST00000664939.1:ENST00000491009.6:ENST00000583400.7:ENST00000654778.1:ENST00000497774.6:ENST00000669136.1:ENST00000659884.1:ENST00000582911.6:ENST00000666215.2:ENST00000580770.5:ENST00000581718.6:ENST00000579473.6:ENST00000581361.5:ENST00000692724.1:ENST00000689691.1:ENST00000686699.1:ENST00000483140.7:ENST00000477249.7:ENST00000484836.2:ENST00000655540.1:ENST00000475953.6:ENST00000470491.7:ENST00000480811.6:ENST00000662869.1:ENST00000671170.1:ENST00000658116.2:ENST00000685971.1:ENST00000689483.1:ENST00000688805.1:ENST00000692720.1:ENST00000653954.1:ENST00000584926.5:ENST00000654561.1:ENST00000492250.5:ENST00000581913.5:ENST00000660462.1:ENST00000481027.5:ENST00000472367.5:ENST00000483588.2:ENST00000478103.6:ENST00000460249.5:ENST00000658943.1:ENST00000690854.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	13	212	2	2.52412	2.7007849999999998	2.87745	1.15902e-4	1.10589e-4	0.009713	0.00892604
chr5	109382802	109382902	2702097	0	-	0.33	(0.32,0.35]	chr5	254352	7	INTRON	INTRON	PJA2	ENSG00000198961.10	ENST00000361557.4:ENST00000361189.7:ENST00000511624.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	74	2	2.50411	2.70077	2.89743	0.0127608	0.00267989	0.0926667	0.0478767
chr22	20577920	20578020	7480078	0	+	0.54	(0.515,0.57]	chr22	763027	23	INTRON	INTRON	MED15	ENSG00000099917.17	ENST00000433831.5:ENST00000292733.11:ENST00000263205.11:ENST00000406969.5:ENST00000382974.6:ENST00000492381.5:ENST00000478831.5:ENST00000489651.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	17	229	2	2.36437	2.70076	3.03715	1.13765e-4	6.17011e-6	0.00913877	0.00186272
chr7	5689878	5689978	3474034	0	-	0.46	(0.44,0.476]	chr7	324821	370	INTRON	INTRON	RNF216	ENSG00000011275.19	ENST00000425013.6:ENST00000389902.8:ENST00000389900.8:ENST00000484458.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	63	2	1.7651	2.7007399999999997	3.63638	0.039388	4.74104e-4	0.143072	0.0196816
chr5	150021082	150021181	2518869	0	+	0.383838	(0.378,0.408]	chr5	240788	20	INTRON	INTRON	HMGXB3	ENSG00000113716.13	ENST00000613459.4:ENST00000503427.5:ENST00000502717.6	protein_coding	protein_coding	protein_coding	protein_coding	3	54	2	2.61188	2.70067	2.78946	0.0158859	0.0047055	0.101453	0.0631419
chr13	110892943	110893027	5650415	0	-	0.452381	(0.44,0.476]	chr13	538341	4	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	ANKRD10	ENSG00000088448.14	ENST00000267339.6:ENST00000485844.1:ENST00000603993.1:ENST00000489973.6:ENST00000310847.8:ENST00000465753.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	26	398	2	2.68821	2.70064	2.71307	5.02523e-5	3.04298e-6	0.0061299	0.00112184
chr7	158824944	158825044	3689768	0	-	0.52	(0.515,0.57]	chr7	342421	255	INTRON	INTRON	ESYT2	ENSG00000117868.18	ENST00000251527.10:ENST00000275418.13:ENST00000652148.1:ENST00000483958.5:ENST00000497111.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	151	2	2.53173	2.70052	2.86931	2.65588e-4	4.64989e-5	0.0149989	0.00555027
chr11	86062259	86062359	5014775	0	-	0.55	(0.515,0.57]	chr11	473022	303	INTRON	INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000630913.2:ENST00000528398.5:ENST00000356360.9:ENST00000534412.5:ENST00000531558.1:ENST00000531930.5:ENST00000532041.5:ENST00000525162.5:ENST00000528256.1:ENST00000528411.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	24	321	2	2.58152	2.7004799999999998	2.81944	3.11958e-5	1.70407e-6	0.00466833	7.89255e-4
chr7	127808172	127808272	3403972	0	+	0.46	(0.44,0.476]	chr7	318140	2	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000468166.5:ENST00000465900.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	125	2	2.15225	2.7004799999999998	3.24871	0.00129761	3.52936e-4	0.0333764	0.0174637
chr4	16202521	16202582	2115575	0	-	0.442623	(0.44,0.476]	chr4	208981	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	TAPT1	ENSG00000169762.17	ENST00000405303.7:ENST00000505603.5:ENST00000513359.5:ENST00000508888.5:ENST00000510868.5:ENST00000505152.5:ENST00000513833.1:ENST00000505317.1:ENST00000511156.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	54	2	2.5364	2.70046	2.86452	0.0309324	0.00159222	0.13151	0.0367961
chr7	121047293	121047393	3394225	0	+	0.18	[0,0.28]	chr7	317687	3	SS5_PROX	SS5_PROX:INTRON	CPED1	ENSG00000106034.18	ENST00000340646.9:ENST00000310396.10:ENST00000428526.5:ENST00000495036.5:ENST00000450913.6:ENST00000520801.5:ENST00000521774.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	103	2	2.0939	2.700425	3.30695	0.00875794	0.00469836	0.0846118	0.0600108
chr1	35495311	35495411	421257	0	-	0.39	(0.378,0.408]	chr1	50810	157	INTRON	INTRON	KIAA0319L	ENSG00000142687.18	ENST00000325722.8:ENST00000426982.6:ENST00000440579.5:ENST00000431916.5:ENST00000482929.6:ENST00000478463.6:ENST00000470388.5:ENST00000492888.1:ENST00000469892.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	54	2	2.29798	2.70036	3.10274	0.0147606	0.00586642	0.106702	0.0668095
chr19	19441517	19441617	7035706	0	+	0.38	(0.378,0.408]	chr19	701448	49	INTRON	INTRON	GATAD2A	ENSG00000167491.18	ENST00000494516.6:ENST00000360315.7:ENST00000609040.5:ENST00000417582.6:ENST00000683918.1:ENST00000432704.5:ENST00000404158.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	54	2	2.29798	2.70036	3.10274	0.0147606	0.00586642	0.106702	0.0668095
chr1	90992963	90993063	502237	0	-	0.45	(0.44,0.476]	chr1	59504	102	INTRON	INTRON	ZNF644	ENSG00000122482.22	ENST00000370440.5:ENST00000337393.10:ENST00000347275.9:ENST00000361321.5:ENST00000467231.5:ENST00000498303.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	126	2	1.57044	2.70031	3.83018	0.0206907	8.00631e-6	0.110999	0.00202764
chr15	80079915	80080015	6071241	0	+	0.41	(0.408,0.44]	chr15	578322	42	INTRON	INTRON	ZFAND6	ENSG00000086666.19	ENST00000613266.4:ENST00000561060.5:ENST00000559157.5:ENST00000261749.11:ENST00000561012.5:ENST00000564367.5:ENST00000558494.5:ENST00000618205.4:ENST00000560470.5:ENST00000560228.5:ENST00000559835.5:ENST00000559775.5:ENST00000558688.5:ENST00000560976.5:ENST00000560392.5:ENST00000558390.5:ENST00000558272.5:ENST00000557793.1:ENST00000616533.4:ENST00000558087.5:ENST00000558997.5:ENST00000558724.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	129	2	2.10638	2.700295	3.29421	0.00465298	3.47956e-5	0.0600108	0.00469546
chr17	70077780	70077880	6828226	0	-	0.36	(0.35,0.378]	chr17	675009	46	INTRON	INTRON	ENSG00000230258	ENSG00000230258.6	ENST00000435112.5	lncRNA	lncRNA	lncRNA	lncRNA	3	58	2	1.81767	2.700265	3.58286	0.0640429	6.77448e-4	0.177882	0.0236287
chr7	12389658	12389758	3485298	0	-	0.29	(0.28,0.32]	chr7	325963	3	SS3_PROX	SS3_PROX:INTRON	VWDE	ENSG00000146530.15	ENST00000275358.8:ENST00000452576.6:ENST00000521169.5:ENST00000326715.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	122	2	2.38564	2.70025	3.01486	0.00230684	0.00162624	0.0440898	0.0367966
chr17	47147646	47147745	6788960	0	-	0.424242	(0.408,0.44]	chr17	669573	33	INTRON	INTRON	CDC27	ENSG00000004897.12	ENST00000066544.8:ENST00000531206.5:ENST00000533415.5:ENST00000527547.5:ENST00000526866.5:ENST00000525495.6:ENST00000574304.5:ENST00000575830.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	164	2	2.40127	2.700215	2.99916	0.00123682	2.62474e-5	0.0322669	0.00402784
chr1	246164062	246164161	677273	0	-	0.393939	(0.378,0.408]	chr1	79721	678	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000391836.3:ENST00000453676.5:ENST00000462422.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	146	2	2.2403	2.7002100000000002	3.16012	0.00125943	1.44288e-4	0.03295	0.0109794
chr8	37869919	37870019	3935643	0	-	0.37	(0.35,0.378]	chr8	360554	1	SS5_PROX	SS5_PROX:INTRON	RAB11FIP1	ENSG00000156675.16	ENST00000330843.9:ENST00000287263.8:ENST00000522727.5:ENST00000523182.5:ENST00000522774.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	118	2	2.54506	2.70011	2.85516	0.00239229	4.55715e-4	0.0440612	0.0192851
chr20	35660600	35660698	7335739	0	-	0.377551	(0.35,0.378]	chr20	747302	12	INTRON	INTRON	CPNE1:RBM12	ENSG00000214078.13:ENSG00000244462.8	ENST00000352393.8:ENST00000397443.7:ENST00000483359.5:ENST00000397442.5:ENST00000401607.6:ENST00000437340.5:ENST00000430570.5:ENST00000412056.5:ENST00000414664.5:ENST00000416778.5:ENST00000439806.6:ENST00000439669.5:ENST00000420363.5:ENST00000434795.5:ENST00000440240.5:ENST00000458038.5:ENST00000437100.5:ENST00000414711.5:ENST00000435747.2:ENST00000374114.8:ENST00000359646.1:ENST00000374104.7:ENST00000424458.5:ENST00000431148.1:ENST00000435161.1:ENST00000475146.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	42	2	2.47065	2.700085	2.92952	0.0386172	0.00881187	0.142656	0.084878
chr20	6019516	6019615	7230684	0	+	0.323232	(0.32,0.35]	chr20	734840	36	INTRON	INTRON	CRLS1	ENSG00000088766.12	ENST00000452938.5:ENST00000378863.9:ENST00000378868.4:ENST00000489345.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	83	2	2.58753	2.700075	2.81262	0.00560122	0.00311322	0.0678837	0.0498063
chr12	131933133	131933233	5250043	0	+	0.42	(0.408,0.44]	chr12	499258	3	SS5_PROX	SS5_PROX:INTRON	PUS1	ENSG00000177192.14	ENST00000443358.6:ENST00000322060.9:ENST00000376649.8:ENST00000542167.2:ENST00000538037.5:ENST00000535067.5:ENST00000537484.1	protein_coding	protein_coding	protein_coding	protein_coding	14	231	2	2.30509	2.699995	3.0949	3.92467e-4	1.53822e-5	0.0178532	0.00314887
chr1	229542371	229542471	653606	0	-	0.42	(0.408,0.44]	chr1	77474	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	ABCB10	ENSG00000135776.5	ENST00000344517.5	protein_coding	protein_coding	protein_coding	protein_coding	2	39	2	2.43988	2.6999750000000002	2.96007	0.0398236	0.00753901	0.143072	0.0773151
chr3	12652174	12652274	1617313	0	-	0.44	(0.408,0.44]	chr3	166996	27	INTRON	INTRON	RAF1	ENSG00000132155.14	ENST00000688543.1:ENST00000685348.1:ENST00000251849.9:ENST00000442415.7:ENST00000688444.1:ENST00000692093.1:ENST00000691724.1:ENST00000423275.6:ENST00000687326.1:ENST00000688803.1:ENST00000689876.1:ENST00000686455.1:ENST00000684903.1:ENST00000693312.1:ENST00000690460.1:ENST00000692773.1:ENST00000688625.1:ENST00000693664.1:ENST00000686762.1:ENST00000692311.1:ENST00000692558.1:ENST00000691779.1:ENST00000685738.1:ENST00000690397.1:ENST00000687923.1:ENST00000688269.1:ENST00000693705.1:ENST00000689097.1:ENST00000691899.1:ENST00000689914.1:ENST00000690625.1:ENST00000689389.1:ENST00000687257.1:ENST00000686409.1:ENST00000685653.1:ENST00000689540.1:ENST00000691396.1:ENST00000685437.1:ENST00000689418.1:ENST00000687940.1:ENST00000689481.1:ENST00000491290.2:ENST00000686479.1:ENST00000689033.1:ENST00000692777.1:ENST00000689226.1:ENST00000691718.1:ENST00000692959.1:ENST00000685740.1:ENST00000688753.1:ENST00000688779.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	39	2	2.43988	2.6999750000000002	2.96007	0.0398236	0.00753901	0.143072	0.0773151
chr11	47581303	47581401	4789181	0	+	0.469388	(0.44,0.476]	chr11	443248	1	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	NDUFS3	ENSG00000213619.11	ENST00000533507.5:ENST00000263774.9:ENST00000534716.2:ENST00000524568.1:ENST00000677462.1:ENST00000678975.1:ENST00000531351.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	65	2	2.2543	2.699945	3.14559	0.00787184	0.00384923	0.076155	0.0562562
chr19	11116312	11116358	7017101	0	+	0.282609	(0.28,0.32]	chr19	697478	1	SS5_PROX	SS5_PROX:INTRON	LDLR	ENSG00000130164.14	ENST00000557933.5:ENST00000558518.6:ENST00000545707.5:ENST00000535915.5:ENST00000455727.6:ENST00000558013.5:ENST00000252444.9:ENST00000559340.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	149	2	1.99152	2.69994	3.40836	0.00509793	3.04565e-4	0.0646039	0.0161236
chr1	145623106	145623160	210138	0	+	0.351852	(0.35,0.378]	chr1	22955	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	GPR89A	ENSG00000117262.19	ENST00000313835.14:ENST00000460277.5:ENST00000532574.5:ENST00000528944.5:ENST00000466593.5:ENST00000534502.5:ENST00000462900.2:ENST00000527989.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	42	2	2.60341	2.6999199999999997	2.79643	0.0275785	0.013543	0.123904	0.101363
chr10	38401480	38401577	4603075	0	-	0.360825	(0.35,0.378]	chr10	424060	19	INTRON	INTRON	SEPTIN7P9	ENSG00000120555.14	ENST00000475691.5:ENST00000686819.1:ENST00000489259.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	2	42	2	2.60341	2.6999199999999997	2.79643	0.0275785	0.013543	0.123904	0.101363
chr6	147747451	147747551	2991473	0	+	0.34	(0.32,0.35]	chr6	280177	100	INTRON	INTRON	ENSG00000227681	ENSG00000227681.5	ENST00000427015.1	lncRNA	lncRNA	lncRNA	lncRNA	7	135	2	2.30766	2.69989	3.09212	0.00406148	1.51463e-4	0.0558167	0.0106137
chr10	63226878	63226978	4632996	0	-	0.42	(0.408,0.44]	chr10	426215	65	INTRON	INTRON	JMJD1C	ENSG00000171988.20	ENST00000399262.7:ENST00000402544.5:ENST00000542921.5:ENST00000469152.5:ENST00000489372.4:ENST00000633035.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	52	2	2.44674	2.69985	2.95296	0.00929354	0.00868283	0.0842798	0.0817766
chr10	110013062	110013161	4518444	0	+	0.414141	(0.408,0.44]	chr10	416761	44	INTRON	INTRON	ADD3	ENSG00000148700.15	ENST00000468251.5:ENST00000360162.7:ENST00000277900.12:ENST00000356080.9:ENST00000484622.5:ENST00000487085.5:ENST00000459738.5:ENST00000497125.5:ENST00000495661.5:ENST00000475954.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	52	2	2.44674	2.69985	2.95296	0.00929354	0.00868283	0.0842798	0.0817766
chr2	11464480	11464579	1068933	0	-	0.414141	(0.408,0.44]	chr2	114156	58	INTRON	INTRON	E2F6	ENSG00000169016.17	ENST00000307236.8:ENST00000542100.5:ENST00000546212.2:ENST00000381525.8:ENST00000444832.5:ENST00000428221.5:ENST00000455198.5:ENST00000437573.5:ENST00000421117.1:ENST00000468775.1:ENST00000498701.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	64	2	1.8749	2.699805	3.52471	0.0264246	0.00112428	0.133676	0.0306963
chr22	23694918	23695018	7563046	0	-	0.41	(0.408,0.44]	chr22	773676	48	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	GUSBP11	ENSG00000228315.12	ENST00000422506.5:ENST00000445682.2:ENST00000452737.5:ENST00000451837.5:ENST00000421064.5:ENST00000651432.1	lncRNA	lncRNA	lncRNA	lncRNA	4	64	2	1.8749	2.699805	3.52471	0.0264246	0.00112428	0.133676	0.0306963
chr11	5409466	5409566	4897314	0	-	0.21	[0,0.28]	chr11	459187	622	INTRON	INTRON	HBG2:ENSG00000239920:HBE1:OR51B5	ENSG00000196565.15:ENSG00000239920.2:ENSG00000213931.7:ENSG00000167355.8	ENST00000380252.6:ENST00000380259.7:ENST00000292896.3:ENST00000380237.5:ENST00000420726.6:ENST00000420465.6:ENST00000415970.6:ENST00000418729.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:nonsense_mediated_decay:processed_transcript	4	104	2	2.56073	2.69979	2.83885	0.00743095	0.00399044	0.0772645	0.0550443
chr1	220113021	220113120	318974	0	+	0.525253	(0.515,0.57]	chr1	36525	17	INTRON	INTRON	IARS2	ENSG00000067704.10	ENST00000366922.3	protein_coding	protein_coding	protein_coding	protein_coding	6	86	2	2.4745	2.69978	2.92506	0.00279583	2.50659e-4	0.0469265	0.0140705
chr3	23840289	23840389	1388073	0	+	0.35	(0.32,0.35]	chr3	145385	284	INTRON	INTRON	UBE2E1	ENSG00000170142.12	ENST00000306627.8:ENST00000346855.7:ENST00000495141.5:ENST00000442670.5:ENST00000424381.5:ENST00000467766.5:ENST00000475680.5:ENST00000452012.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	98	2	2.50411	2.6997799999999996	2.89545	0.00267989	0.0022546	0.0478767	0.0425438
chr1	90028097	90028196	161029	0	+	0.353535	(0.35,0.378]	chr1	17365	5	UTR3	UTR3:EXON_MRNA	ZNF326	ENSG00000162664.17	ENST00000340281.9:ENST00000394583.7:ENST00000370447.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	77	2	2.28125	2.6997400000000003	3.11823	0.0182271	5.25625e-4	0.107842	0.0206013
chr6	35655139	35655239	3087182	0	-	0.27	[0,0.28]	chr6	288789	119	INTRON	INTRON	FKBP5	ENSG00000096060.15	ENST00000536438.5:ENST00000539068.5:ENST00000357266.9:ENST00000542713.1	protein_coding	protein_coding	protein_coding	protein_coding	2	55	2	2.59548	2.69972	2.80396	0.0346067	0.0161429	0.136649	0.109464
chr1	236268375	236268475	665020	0	-	0.43	(0.408,0.44]	chr1	78733	34	EXON_MRNA	EXON_MRNA:INTRON	ERO1B	ENSG00000086619.15	ENST00000354619.10:ENST00000687487.1:ENST00000689343.1:ENST00000691519.1:ENST00000686625.1:ENST00000366589.1:ENST00000687604.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	39	2	2.6542	2.69969	2.74518	0.0227514	0.0152229	0.117618	0.108535
chr1	247858751	247858848	351609	0	+	0.43299	(0.408,0.44]	chr1	40636	7	INTRON	INTRON	TRIM58	ENSG00000162722.9	ENST00000366481.4	protein_coding	protein_coding	protein_coding	protein_coding	2	39	2	2.6542	2.69969	2.74518	0.0227514	0.0152229	0.117618	0.108535
chr11	7992705	7992795	4728879	0	+	0.422222	(0.408,0.44]	chr11	437741	7	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	EIF3F	ENSG00000175390.15	ENST00000533626.5:ENST00000651655.1:ENST00000677121.1:ENST00000678993.1:ENST00000640290.2:ENST00000531572.2:ENST00000531329.6:ENST00000678132.1:ENST00000528653.2:ENST00000677179.1:ENST00000528763.2:ENST00000677795.1:ENST00000532882.2:ENST00000677866.1:ENST00000530219.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	39	2	2.6542	2.69969	2.74518	0.0227514	0.0152229	0.117618	0.108535
chr16	12146230	12146330	6293027	0	+	0.44	(0.408,0.44]	chr16	602439	106	INTRON	INTRON	SNX29	ENSG00000048471.14	ENST00000566228.6:ENST00000564791.5	protein_coding	protein_coding	protein_coding	protein_coding	2	39	2	2.6542	2.69969	2.74518	0.0227514	0.0152229	0.117618	0.108535
chr19	17728545	17728637	7031314	0	+	0.423913	(0.408,0.44]	chr19	700348	4	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MAP1S	ENSG00000130479.11	ENST00000324096.9:ENST00000597735.5:ENST00000544059.2:ENST00000597000.1:ENST00000598756.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	39	2	2.6542	2.69969	2.74518	0.0227514	0.0152229	0.117618	0.108535
chr15	30653996	30654095	5992558	0	+	0.525253	(0.515,0.57]	chr15	569759	46	INTRON	INTRON	ENSG00000284906:ENSG00000285035	ENSG00000284906.3:ENSG00000285035.2	ENST00000685924.1:ENST00000563110.6:ENST00000642399.2:ENST00000566548.5	protein_coding	protein_coding	protein_coding:transcribed_unprocessed_pseudogene	protein_coding:nonsense_mediated_decay:processed_transcript:transcribed_unprocessed_pseudogene	3	45	2	2.08547	2.699675	3.31388	0.0289426	0.00174704	0.1274	0.0386026
chr3	138830700	138830800	1831460	0	-	0.52	(0.515,0.57]	chr3	184062	338	INTRON	INTRON	PIK3CB	ENSG00000051382.9	ENST00000674063.1:ENST00000477593.5:ENST00000462898.5:ENST00000483968.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	45	2	2.08547	2.699675	3.31388	0.0289426	0.00174704	0.1274	0.0386026
chr13	113214167	113214267	5548333	0	+	0.41	(0.408,0.44]	chr13	530119	37	INTRON	INTRON	CUL4A	ENSG00000139842.15	ENST00000375441.7:ENST00000326335.8:ENST00000451881.5:ENST00000617546.4:ENST00000488558.2:ENST00000375440.9:ENST00000474116.5:ENST00000494985.5:ENST00000463426.5:ENST00000498562.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	70	2	2.53313	2.699625	2.86612	0.00739595	0.00157924	0.074277	0.0366789
chr20	62936595	62936695	7362557	0	-	0.61	(0.57,1]	chr20	751216	74	INTRON	INTRON	DIDO1	ENSG00000101191.17	ENST00000266070.8:ENST00000370371.8	protein_coding	protein_coding	protein_coding	protein_coding	3	29	2	2.66438	2.69956	2.73474	0.0171563	0.00241874	0.104099	0.0454275
chr7	158746799	158746898	3688973	0	-	0.434343	(0.408,0.44]	chr7	342335	27	INTRON	INTRON	ESYT2	ENSG00000117868.18	ENST00000251527.10:ENST00000275418.13:ENST00000652148.1	protein_coding	protein_coding	protein_coding	protein_coding	11	145	2	1.55373	2.69956	3.84539	0.0131662	1.50966e-5	0.0999551	0.00311444
chr19	1272705	1272793	6994623	0	+	0.363636	(0.35,0.378]	chr19	693002	4	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	CIRBP	ENSG00000099622.14	ENST00000588030.5:ENST00000586472.5:ENST00000588090.5:ENST00000591935.5:ENST00000586548.5:ENST00000585913.5:ENST00000589710.5:ENST00000586773.5:ENST00000587896.6:ENST00000593093.5:ENST00000413636.6:ENST00000590704.5:ENST00000590347.5:ENST00000587169.5:ENST00000320936.9:ENST00000586636.5:ENST00000591376.5:ENST00000591055.5:ENST00000589235.5:ENST00000585914.5:ENST00000588344.2:ENST00000592234.5:ENST00000444172.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	58	1002	2	2.5775	2.699555	2.82161	3.45685e-6	3.40754e-6	0.00131943	0.00120209
chr10	74006056	74006156	4454580	0	+	0.54	(0.515,0.57]	chr10	411385	73	INTRON	INTRON	VCL	ENSG00000035403.18	ENST00000623461.3:ENST00000372755.7:ENST00000624354.3:ENST00000211998.10:ENST00000478896.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	45	2	2.27238	2.6995050000000003	3.12663	0.0161808	0.00374498	0.101453	0.0562234
chr7	77701344	77701444	3343118	0	+	0.34	(0.32,0.35]	chr7	311432	36	INTRON	INTRON	RSBN1L	ENSG00000187257.16	ENST00000334955.13:ENST00000445288.5	protein_coding	protein_coding	protein_coding	protein_coding	4	77	2	2.68921	2.69944	2.70967	0.0230336	0.00105927	0.118056	0.0299929
chr16	30292507	30292598	6472935	0	-	0.285714	(0.28,0.32]	chr16	625669	8	INTRON	INTRON	SMG1P5	ENSG00000183604.15	ENST00000529428.5:ENST00000411546.4:ENST00000691460.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	6	129	2	2.6285	2.6994350000000003	2.7703700000000002	0.00255625	8.96564e-4	0.0449775	0.0273866
chr22	20110598	20110697	7478551	0	+	0.383838	(0.378,0.408]	chr22	762762	6	UTR3	UTR3:EXON_MRNA	DGCR8	ENSG00000128191.16	ENST00000383024.6:ENST00000351989.8:ENST00000495826.5:ENST00000407755.1:ENST00000498171.5:ENST00000475941.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	131	2	1.83778	2.6994100000000003	3.56104	0.00609624	8.22789e-5	0.0706177	0.00812487
chr22	20119434	20119529	7478608	0	+	0.505263	(0.476,0.515]	chr22	762783	4	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	RANBP1	ENSG00000099901.17	ENST00000435265.5:ENST00000432879.5:ENST00000430524.6:ENST00000402752.5:ENST00000488484.1:ENST00000331821.7:ENST00000411892.5:ENST00000467920.1:ENST00000416427.5:ENST00000421656.5:ENST00000423859.5:ENST00000418705.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	19	313	2	2.33142	2.6993549999999997	3.06729	1.87032e-4	4.03389e-6	0.0119402	0.00145091
chr1	235128015	235128094	661831	0	-	0.56962	(0.515,0.57]	chr1	78341	2	INTRON	INTRON	TOMM20	ENSG00000173726.11	ENST00000366607.5	protein_coding	protein_coding	protein_coding	protein_coding	10	136	2	2.42857	2.69931	2.97005	3.71848e-4	8.35839e-5	0.0173669	0.00815123
chr12	64423444	64423544	5153084	0	+	0.56	(0.515,0.57]	chr12	487775	2	SS5_PROX	SS5_PROX:INTRON	XPOT	ENSG00000184575.12	ENST00000332707.10:ENST00000542958.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	12	130	2	2.08842	2.69931	3.3102	6.41796e-4	1.88344e-4	0.0228958	0.012549
chr2	202266486	202266585	984917	0	+	0.555556	(0.515,0.57]	chr2	105703	1	INTRON	INTRON	NOP58	ENSG00000055044.11	ENST00000488403.5:ENST00000426814.5:ENST00000264279.10:ENST00000472050.5:ENST00000492740.5:ENST00000467734.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	43	2	1.22815	2.69926	4.17037	0.0710142	0.0139194	0.185044	0.10247
chr2	182927716	182927816	1284888	0	-	0.4	(0.378,0.408]	chr2	135275	2	SS5_PROX	SS5_PROX:INTRON	NCKAP1	ENSG00000061676.15	ENST00000361354.9:ENST00000360982.2	protein_coding	protein_coding	protein_coding	protein_coding	4	74	2	2.21238	2.69923	3.18608	0.0218124	3.50013e-4	0.11491	0.0166791
chr19	34397763	34397859	7052830	0	+	0.46875	(0.44,0.476]	chr19	703425	6	EXON_MRNA	EXON_MRNA:INTRON	GPI	ENSG00000105220.17	ENST00000415930.8:ENST00000588991.7:ENST00000356487.11:ENST00000647446.1:ENST00000586425.2:ENST00000643067.1:ENST00000586392.1:ENST00000586077.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	72	2	1.76195	2.699165	3.63638	0.0252608	4.74104e-4	0.12011	0.0196816
chr11	66087219	66087319	4808038	0	+	0.41	(0.408,0.44]	chr11	447334	26	INTRON	INTRON	PACS1	ENSG00000175115.13	ENST00000320580.9:ENST00000527224.1:ENST00000533756.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	64	2	1.64062	2.699085	3.75755	0.0557275	2.62433e-4	0.165463	0.0143317
chr7	4692363	4692463	3270016	0	+	0.47	(0.44,0.476]	chr7	303884	91	INTRON	INTRON	FOXK1	ENSG00000164916.11	ENST00000328914.5	protein_coding	protein_coding	protein_coding	protein_coding	7	115	2	2.4345	2.699085	2.96367	0.00185115	2.39417e-4	0.0388609	0.0136403
chr16	85573346	85573446	6415565	0	+	0.4	(0.378,0.408]	chr16	615470	166	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	7	114	2	2.24395	2.6990499999999997	3.15415	0.0027044	4.11608e-4	0.0467523	0.0181365
chr1	1686695	1686794	360903	0	-	0.565657	(0.515,0.57]	chr1	42013	95	INTRON	INTRON	SLC35E2B	ENSG00000189339.12	ENST00000614300.4:ENST00000617444.5:ENST00000611123.1:ENST00000481276.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	34	2	2.56306	2.6990350000000003	2.83501	0.0247751	0.0117686	0.131869	0.0894475
chr22	20521963	20522062	7479492	0	+	0.525253	(0.515,0.57]	chr22	762957	26	INTRON	INTRON	MED15	ENSG00000099917.17	ENST00000445987.5:ENST00000444094.5:ENST00000414658.5:ENST00000486656.5:ENST00000433831.5:ENST00000432052.5:ENST00000292733.11:ENST00000263205.11:ENST00000477824.5:ENST00000406969.5:ENST00000382974.6:ENST00000441501.5:ENST00000438962.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	34	2	2.56306	2.6990350000000003	2.83501	0.0247751	0.0117686	0.131869	0.0894475
chr2	130045156	130045256	1227475	0	-	0.48	(0.476,0.515]	chr2	130687	4	SS5_PROX	SS5_PROX:INTRON	ENSG00000286058	ENSG00000286058.1	ENST00000325390.7:ENST00000651005.1	lncRNA	lncRNA	lncRNA	lncRNA	3	52	2	2.19809	2.69892	3.19975	0.020317	0.00383299	0.121522	0.0542786
chr3	11816579	11816679	1615777	0	-	0.49	(0.476,0.515]	chr3	166773	1	SS5_PROX	SS5_PROX:INTRON	TAMM41	ENSG00000144559.11	ENST00000273037.9:ENST00000455809.6:ENST00000457498.5:ENST00000414736.1:ENST00000444133.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	52	2	2.19809	2.69892	3.19975	0.020317	0.00383299	0.121522	0.0542786
chr10	22604436	22604536	4579393	0	-	0.44	(0.408,0.44]	chr10	422005	123	INTRON	INTRON	PIP4K2A	ENSG00000150867.14	ENST00000376573.9:ENST00000545335.5:ENST00000422321.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	73	2	1.4947	2.698905	3.90311	0.0566065	1.24325e-4	0.167352	0.00952291
chr1	227308404	227308504	651620	0	-	0.58	(0.57,1]	chr1	77110	433	INTRON	INTRON	CDC42BPA	ENSG00000143776.20	ENST00000366766.8:ENST00000366769.7:ENST00000334218.9:ENST00000366767.7:ENST00000366764.8:ENST00000478573.6:ENST00000682551.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	37	2	2.66305	2.6988950000000003	2.73474	0.00327879	0.00241874	0.0509077	0.0454275
chr16	89538990	89539087	6420666	0	+	0.587629	(0.57,1]	chr16	616262	14	EXON_MRNA	EXON_MRNA:INTRON	SPG7	ENSG00000197912.16	ENST00000647079.1:ENST00000646303.1:ENST00000643649.1:ENST00000644498.1:ENST00000645897.1:ENST00000643668.1:ENST00000644225.1:ENST00000645818.2:ENST00000645977.1:ENST00000645063.1:ENST00000646263.1:ENST00000643724.1:ENST00000644781.1:ENST00000644901.1:ENST00000645042.1:ENST00000646531.1:ENST00000646930.1:ENST00000642436.1:ENST00000644210.1:ENST00000646589.1:ENST00000268704.7:ENST00000646826.1:ENST00000646716.1:ENST00000643345.1:ENST00000646958.1:ENST00000643105.1:ENST00000645354.1:ENST00000642334.1:ENST00000647227.1:ENST00000646445.1:ENST00000643954.1:ENST00000646399.1:ENST00000644671.1:ENST00000644748.1:ENST00000643496.1:ENST00000647032.1:ENST00000644751.1:ENST00000642427.1:ENST00000643370.1:ENST00000645886.1:ENST00000646454.1:ENST00000561945.2:ENST00000644171.1:ENST00000566682.2:ENST00000645258.1:ENST00000644044.1:ENST00000642263.1:ENST00000644556.1:ENST00000645842.1:ENST00000643734.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	37	2	2.66305	2.6988950000000003	2.73474	0.00327879	0.00241874	0.0509077	0.0454275
chr16	81317076	81317176	6404241	0	+	0.59	(0.57,1]	chr16	614961	14	INTRON	INTRON	GAN	ENSG00000261609.8	ENST00000648349.2:ENST00000648994.2:ENST00000674788.1:ENST00000650388.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	29	2	2.05026	2.698885	3.34751	0.0321326	0.00122677	0.145026	0.0320791
chr1	155468893	155468993	561952	0	-	0.31	(0.28,0.32]	chr1	67095	59	INTRON	INTRON	ASH1L	ENSG00000116539.14	ENST00000676814.1:ENST00000392403.8:ENST00000368346.7:ENST00000677213.1:ENST00000678117.1:ENST00000679097.1:ENST00000679333.1:ENST00000677042.1:ENST00000678699.1:ENST00000677825.1:ENST00000679133.1:ENST00000548830.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	82	2	2.61764	2.69884	2.78004	0.0193244	0.00179526	0.108861	0.0392772
chr7	157233421	157233520	3454908	0	+	0.484848	(0.476,0.515]	chr7	323002	17	INTRON	INTRON	UBE3C	ENSG00000009335.18	ENST00000348165.10:ENST00000470408.5:ENST00000494532.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	127	2	2.59902	2.69879	2.79856	7.60949e-4	3.05324e-4	0.0252625	0.0155972
chr14	102615817	102615917	5822765	0	+	0.44	(0.408,0.44]	chr14	552490	221	INTRON	INTRON	RCOR1	ENSG00000089902.10	ENST00000262241.7	protein_coding	protein_coding	protein_coding	protein_coding	3	52	2	2.39162	2.698785	3.00595	0.0105837	0.00781452	0.0911864	0.0759016
chr5	119318399	119318499	2462095	0	+	0.42	(0.408,0.44]	chr5	235848	17	INTRON	INTRON	TNFAIP8	ENSG00000145779.8	ENST00000274456.6:ENST00000388882.5	protein_coding	protein_coding	protein_coding	protein_coding	3	52	2	2.39162	2.698785	3.00595	0.0105837	0.00781452	0.0911864	0.0759016
chr1	65540690	65540790	138392	0	+	0.33	(0.32,0.35]	chr1	15499	145	INTRON	INTRON	LEPR	ENSG00000116678.20	ENST00000371060.7:ENST00000371059.7:ENST00000349533.11:ENST00000616738.4:ENST00000344610.12:ENST00000462765.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	73	2	2.40617	2.69871	2.99125	0.00958447	0.0040507	0.0820838	0.0578376
chr17	22168447	22168547	6579348	0	+	0.56	(0.515,0.57]	chr17	639556	772	INTRON	INTRON	UBBP4	ENSG00000263563.7	ENST00000648259.1:ENST00000688301.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	6	68	2	1.9021	2.69853	3.49496	0.00848696	9.61701e-4	0.083161	0.0282401
chr17	66537736	66537836	6664650	0	+	0.37	(0.35,0.378]	chr17	650332	411	INTRON	INTRON	PRKCA	ENSG00000154229.12	ENST00000413366.8:ENST00000578063.5:ENST00000284384.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	92	2	2.41088	2.698475	2.98607	0.0047981	9.86191e-4	0.0602209	0.0288537
chr6	107434197	107434297	3181660	0	-	0.4	(0.378,0.408]	chr6	296346	995	INTRON	INTRON	PDSS2	ENSG00000164494.12	ENST00000369037.9:ENST00000369031.4	protein_coding	protein_coding	protein_coding	protein_coding	2	41	2	2.2259	2.698395	3.17089	0.0662381	0.00357279	0.181924	0.0548435
chr1	50592844	50592943	448572	0	-	0.494949	(0.476,0.515]	chr1	54213	77	INTRON	INTRON	FAF1	ENSG00000185104.21	ENST00000396153.7:ENST00000494400.5:ENST00000472808.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	39	2	2.3223	2.69826	3.07422	0.0519312	0.00506023	0.159306	0.0646039
chr9	4800807	4800907	4094944	0	+	0.49	(0.476,0.515]	chr9	373155	72	INTRON	INTRON	RCL1	ENSG00000120158.12	ENST00000381750.9:ENST00000381732.3:ENST00000442869.5:ENST00000473230.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	39	2	2.3223	2.69826	3.07422	0.0519312	0.00506023	0.159306	0.0646039
chrX	129819091	129819190	7885971	0	-	0.515152	(0.476,0.515]	chrX	802973	39	INTRON	INTRON	ZDHHC9	ENSG00000188706.13	ENST00000357166.11:ENST00000371064.7:ENST00000433917.5:ENST00000406492.2	protein_coding	protein_coding	protein_coding	protein_coding	2	39	2	2.3223	2.69826	3.07422	0.0519312	0.00506023	0.159306	0.0646039
chr18	9233345	9233445	6869907	0	+	0.34	(0.32,0.35]	chr18	680611	110	INTRON	INTRON	ANKRD12	ENSG00000101745.17	ENST00000262126.9:ENST00000540578.6:ENST00000400020.7:ENST00000546007.6:ENST00000359158.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	62	2	2.57263	2.69824	2.82385	0.0312297	0.00217392	0.13151	0.043502
chr7	135579513	135579611	3428540	0	+	0.204082	[0,0.28]	chr7	319657	2	INTRON	INTRON	NUP205	ENSG00000155561.15	ENST00000285968.11	protein_coding	protein_coding	protein_coding	protein_coding	3	75	2	2.24546	2.69824	3.15102	0.0206502	0.00767596	0.122348	0.0753665
chr11	2958641	2958739	4891647	0	-	0.408163	(0.378,0.408]	chr11	458301	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	NAP1L4	ENSG00000205531.13	ENST00000620138.4:ENST00000380542.9:ENST00000526115.5:ENST00000492685.5:ENST00000528363.5:ENST00000483643.7:ENST00000528261.1:ENST00000532325.6:ENST00000448187.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	106	2	1.88734	2.6982049999999997	3.50907	0.00371027	0.00127828	0.0561833	0.0326395
chr6	42783198	42783298	2866777	0	+	0.79	(0.57,1]	chr6	271294	7	INTRON	INTRON	BICRAL	ENSG00000112624.13	ENST00000614467.4:ENST00000314073.10	protein_coding	protein_coding	protein_coding	protein_coding	4	34	2	2.16779	2.698175	3.22856	0.00900694	0.00205928	0.0803518	0.0420839
chr6	154836643	154836743	3002872	0	+	0.33	(0.32,0.35]	chr6	280851	25	INTRON	INTRON	TIAM2	ENSG00000146426.19	ENST00000461783.7:ENST00000535064.1:ENST00000460692.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	98	2	2.30754	2.6980899999999997	3.08864	0.0076357	6.64579e-4	0.075226	0.0233423
chr17	27302900	27302993	6580622	0	+	0.354839	(0.35,0.378]	chr17	639611	6	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	WSB1	ENSG00000109046.15	ENST00000581440.5:ENST00000578312.5:ENST00000583742.1:ENST00000467843.6:ENST00000579733.5:ENST00000583193.5:ENST00000262394.7:ENST00000427287.6:ENST00000581185.5:ENST00000581089.1:ENST00000348811.6:ENST00000582208.1:ENST00000584114.1:ENST00000487603.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	171	2	2.66576	2.69808	2.7304	0.00168985	5.23064e-5	0.037084	0.00590498
chr8	92778576	92778676	3989891	0	-	0.45	(0.44,0.476]	chr8	365352	131	INTRON	INTRON	FLJ46284	ENSG00000248858.7	ENST00000504861.2	lncRNA	lncRNA	lncRNA	lncRNA	6	80	2	2.08604	2.6980750000000002	3.31011	0.00407817	0.00259023	0.0580928	0.0452934
chr13	20021410	20021509	5453063	0	+	0.292929	(0.28,0.32]	chr13	522478	14	INTRON	INTRON	ZMYM2	ENSG00000121741.17	ENST00000382874.6:ENST00000610343.5:ENST00000382871.3	protein_coding	protein_coding	protein_coding	protein_coding	6	100	2	1.87474	2.698	3.52126	0.0115687	0.00175369	0.0962115	0.0376491
chr16	81005233	81005333	6530681	0	-	0.46	(0.44,0.476]	chr16	632677	35	INTRON	INTRON	CMC2	ENSG00000103121.9	ENST00000219400.8:ENST00000486645.5:ENST00000570195.5:ENST00000569187.5:ENST00000570086.5:ENST00000565650.5:ENST00000567593.5:ENST00000568228.5:ENST00000565914.5:ENST00000565108.5:ENST00000565925.5:ENST00000564174.5:ENST00000565613.5:ENST00000562713.3:ENST00000562828.5:ENST00000630396.1:ENST00000565514.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	52	2	2.13779	2.6978999999999997	3.25801	0.0264596	0.00248185	0.122506	0.0460771
chr2	37107072	37107172	1095890	0	-	0.25	[0,0.28]	chr2	117443	80	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	EIF2AK2	ENSG00000055332.19	ENST00000681329.1:ENST00000681507.1:ENST00000681463.1:ENST00000679507.1:ENST00000233057.9:ENST00000679979.1:ENST00000680273.1:ENST00000681516.1:ENST00000647926.1:ENST00000395127.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	78	2	2.48772	2.697845	2.90797	0.0125761	0.0118539	0.0962115	0.0926667
chr2	169621303	169621403	906852	0	+	0.29	(0.28,0.32]	chr2	100061	62	INTRON	INTRON	PPIG	ENSG00000138398.17	ENST00000678088.1:ENST00000677392.1:ENST00000433207.6:ENST00000679324.1:ENST00000414307.6:ENST00000676508.1:ENST00000260970.8:ENST00000678695.1:ENST00000409714.7:ENST00000530152.5:ENST00000677750.1:ENST00000678721.1:ENST00000462903.6:ENST00000676756.1:ENST00000679107.1:ENST00000678499.1:ENST00000678638.1:ENST00000448752.7:ENST00000417938.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	66	2	1.96376	2.69781	3.43186	0.0480066	0.00160646	0.153019	0.0367961
chr11	85659028	85659127	5013422	0	-	0.383838	(0.378,0.408]	chr11	472883	14	UTR3	UTR3:EXON_MRNA	CREBZF	ENSG00000137504.15	ENST00000682836.1:ENST00000527447.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	66	2	2.06535	2.697805	3.33026	0.0159849	0.00189824	0.101453	0.0402736
chr15	65737706	65737785	6209240	0	-	0.392405	(0.378,0.408]	chr15	592576	1	CDS	CDS:EXON_MRNA	DENND4A	ENSG00000174485.16	ENST00000443035.8:ENST00000431932.6:ENST00000635620.2:ENST00000564674.5:ENST00000568515.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	66	2	2.06535	2.697805	3.33026	0.0159849	0.00189824	0.101453	0.0402736
chr5	154055581	154055679	2522417	0	+	0.387755	(0.378,0.408]	chr5	241410	20	UTR3	UTR3:EXON_MRNA:INTRON	MFAP3	ENSG00000037749.13	ENST00000522782.6:ENST00000681641.1:ENST00000520327.6:ENST00000521527.5:ENST00000679729.1:ENST00000519928.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	66	2	2.06535	2.697805	3.33026	0.0159849	0.00189824	0.101453	0.0402736
chr12	131712612	131712709	5249101	0	+	0.494845	(0.476,0.515]	chr12	499138	13	EXON_MRNA	EXON_MRNA:INTRON	SFSWAP	ENSG00000061936.10	ENST00000540469.5:ENST00000261674.9:ENST00000538548.5:ENST00000535399.1:ENST00000535236.5:ENST00000541286.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	85	2	2.25138	2.69774	3.1441	0.00692374	5.63876e-4	0.0753208	0.0219303
chr6	149769779	149769877	2996237	0	+	0.459184	(0.44,0.476]	chr6	280349	37	INTRON	INTRON	PCMT1	ENSG00000120265.19	ENST00000367384.7:ENST00000367378.6:ENST00000484601.6:ENST00000367380.9:ENST00000544496.5:ENST00000649295.1:ENST00000494411.6:ENST00000460828.6:ENST00000464889.7:ENST00000486585.2:ENST00000495487.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	169	2	2.10752	2.697715	3.28791	0.0045456	3.69133e-6	0.0595107	0.00125618
chr18	2976982	2977082	6944735	0	-	0.48	(0.476,0.515]	chr18	686830	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	LPIN2	ENSG00000101577.10	ENST00000261596.8:ENST00000677752.1:ENST00000584915.1:ENST00000581568.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	39	2	2.56868	2.697705	2.82673	0.0256676	0.0134403	0.133676	0.0946278
chr19	29992209	29992309	7048063	0	+	0.48	(0.476,0.515]	chr19	702695	54	INTRON	INTRON	URI1	ENSG00000105176.18	ENST00000360605.8:ENST00000574233.5:ENST00000392271.6:ENST00000574110.5:ENST00000574666.5:ENST00000576442.1:ENST00000570704.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	39	2	2.56868	2.697705	2.82673	0.0256676	0.0134403	0.133676	0.0946278
chr4	109474584	109474684	2018980	0	+	0.49	(0.476,0.515]	chr4	200766	10	INTRON	INTRON	SEC24B	ENSG00000138802.11	ENST00000504968.6:ENST00000399100.6:ENST00000265175.5	protein_coding	protein_coding	protein_coding	protein_coding	2	39	2	2.56868	2.697705	2.82673	0.0256676	0.0134403	0.133676	0.0946278
chr5	138358583	138358683	2494910	0	+	0.48	(0.476,0.515]	chr5	238471	52	INTRON	INTRON	KDM3B	ENSG00000120733.14	ENST00000314358.10	protein_coding	protein_coding	protein_coding	protein_coding	2	39	2	2.56868	2.697705	2.82673	0.0256676	0.0134403	0.133676	0.0946278
chr7	99377555	99377655	3361531	0	+	0.49	(0.476,0.515]	chr7	313863	1	SS5_PROX	SS5_PROX:INTRON	ARPC1B	ENSG00000130429.16	ENST00000443222.6:ENST00000414376.6:ENST00000645391.1:ENST00000695607.1:ENST00000455009.6:ENST00000484375.5:ENST00000695608.1:ENST00000418347.6:ENST00000646101.2:ENST00000427217.6:ENST00000451682.5:ENST00000431816.6:ENST00000458033.6:ENST00000417330.6:ENST00000695609.1:ENST00000484600.6:ENST00000429246.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	39	2	2.56868	2.697705	2.82673	0.0256676	0.0134403	0.133676	0.0946278
chr16	31189025	31189119	6340653	0	+	0.340426	(0.32,0.35]	chr16	608344	7	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	FUS	ENSG00000089280.19	ENST00000566605.5:ENST00000254108.12:ENST00000380244.7:ENST00000487509.6:ENST00000568685.1:ENST00000474990.5:ENST00000568901.2:ENST00000564766.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	94	2	1.54135	2.697695	3.85404	0.0353776	3.75908e-4	0.150752	0.0179813
chr14	52509941	52510041	5894058	0	-	0.41	(0.408,0.44]	chr14	559713	186	INTRON	INTRON	TXNDC16	ENSG00000087301.9	ENST00000281741.9:ENST00000554399.1:ENST00000557374.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	63	2	2.38928	2.697615	3.00595	0.00781452	0.0039105	0.0759016	0.0569957
chr11	32585657	32585754	4764486	0	+	0.298969	(0.28,0.32]	chr11	440546	10	INTRON	INTRON	EIF3M	ENSG00000149100.13	ENST00000531921.5:ENST00000531120.6:ENST00000525782.5:ENST00000531186.5:ENST00000524896.5:ENST00000532444.5:ENST00000323213.9:ENST00000524711.5:ENST00000530026.5:ENST00000532054.1:ENST00000533439.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	92	2	1.68411	2.69759	3.71107	0.0323543	8.39788e-4	0.145026	0.0266487
chr16	28199201	28199301	6468338	0	-	0.4	(0.378,0.408]	chr16	624597	178	INTRON	INTRON	XPO6	ENSG00000169180.12	ENST00000304658.10:ENST00000565698.5:ENST00000569951.1:ENST00000566073.1	protein_coding	protein_coding	protein_coding	protein_coding	2	41	2	2.54849	2.69756	2.84663	0.0273196	0.0133954	0.136494	0.0946278
chr21	36321002	36321101	7403695	0	+	0.40404	(0.378,0.408]	chr21	754279	3	INTRON	INTRON	MORC3	ENSG00000159256.13	ENST00000492336.5:ENST00000400485.6:ENST00000487909.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	41	2	2.54849	2.69756	2.84663	0.0273196	0.0133954	0.136494	0.0946278
chr3	43495522	43495622	1674169	0	-	0.39	(0.378,0.408]	chr3	170972	624	INTRON	INTRON	ANO10	ENSG00000160746.13	ENST00000292246.8:ENST00000350459.8:ENST00000396091.7:ENST00000414522.6:ENST00000451430.6:ENST00000448045.1	protein_coding	protein_coding	protein_coding	protein_coding	2	41	2	2.54849	2.69756	2.84663	0.0273196	0.0133954	0.136494	0.0946278
chrX	48574483	48574573	7658494	0	+	0.522222	(0.515,0.57]	chrX	783788	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	RBM3	ENSG00000102317.18	ENST00000472897.5:ENST00000376759.8:ENST00000488216.5:ENST00000466764.5:ENST00000490127.5:ENST00000489344.5:ENST00000491240.5:ENST00000485213.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	14	192	2	2.3434	2.69747	3.05154	2.53917e-4	1.01817e-5	0.0142045	0.00248543
chr10	28562329	28562429	4414097	0	+	0.38	(0.378,0.408]	chr10	407148	239	INTRON	INTRON	WAC	ENSG00000095787.24	ENST00000680735.1:ENST00000375664.8:ENST00000428935.6:ENST00000651598.1:ENST00000628285.3:ENST00000681112.1:ENST00000679570.1:ENST00000375646.5:ENST00000354911.9:ENST00000347934.8:ENST00000420266.6:ENST00000651885.1:ENST00000651441.1:ENST00000679398.1:ENST00000424454.5:ENST00000442148.6:ENST00000448193.5:ENST00000414108.6:ENST00000679428.1:ENST00000439676.5:ENST00000345541.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	104	2	1.64169	2.697445	3.7532	0.0377255	1.39544e-5	0.14078	0.00278668
chr8	129505853	129505952	4060340	0	-	0.262626	[0,0.28]	chr8	369642	107	INTRON	INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1:ENST00000676273.1:ENST00000667643.1:ENST00000668791.1:ENST00000663716.1:ENST00000663572.1:ENST00000676148.1:ENST00000667962.1:ENST00000674877.1:ENST00000675316.1:ENST00000674656.1:ENST00000446592.7:ENST00000667341.1:ENST00000675186.1:ENST00000652971.1:ENST00000661447.1:ENST00000674863.1:ENST00000675498.1:ENST00000675527.1:ENST00000676108.1:ENST00000657647.1:ENST00000675589.1:ENST00000675913.1:ENST00000675109.1:ENST00000671632.1:ENST00000671311.1:ENST00000676099.1:ENST00000660652.1:ENST00000675522.1:ENST00000675183.1:ENST00000658861.1:ENST00000663991.1:ENST00000675044.1:ENST00000675435.1:ENST00000674639.1:ENST00000676069.1:ENST00000675532.1:ENST00000674762.1:ENST00000523151.6:ENST00000675948.1:ENST00000665364.1:ENST00000657251.1:ENST00000675166.1:ENST00000674883.1:ENST00000675867.1:ENST00000674580.1:ENST00000675393.1:ENST00000520048.1:ENST00000674906.1:ENST00000676030.1:ENST00000670588.1:ENST00000675072.1:ENST00000664936.1:ENST00000652914.1:ENST00000657069.1	lncRNA	lncRNA	lncRNA	lncRNA	6	118	2	1.47169	2.697375	3.92306	0.0479607	5.0483e-4	0.171039	0.0208144
chr2	84973944	84974044	820291	0	+	0.49	(0.476,0.515]	chr2	91419	13	INTRON	INTRON	KCMF1	ENSG00000176407.18	ENST00000456682.1:ENST00000409785.9:ENST00000428691.5:ENST00000453448.1	protein_coding	protein_coding	protein_coding	protein_coding	6	99	2	1.95469	2.697315	3.43994	0.0115753	1.29236e-4	0.0962115	0.0103343
chr8	129389327	129389427	4059159	0	-	0.41	(0.408,0.44]	chr8	369565	3	SS5_PROX	SS5_PROX:INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1:ENST00000676273.1:ENST00000667643.1:ENST00000668791.1:ENST00000663716.1:ENST00000663572.1:ENST00000676148.1:ENST00000667962.1:ENST00000674877.1:ENST00000675316.1:ENST00000674656.1:ENST00000446592.7:ENST00000667341.1:ENST00000675186.1:ENST00000652971.1:ENST00000661447.1:ENST00000674863.1:ENST00000675498.1:ENST00000675527.1:ENST00000676108.1:ENST00000657647.1:ENST00000675589.1:ENST00000675913.1:ENST00000675109.1:ENST00000671632.1:ENST00000671311.1:ENST00000676099.1:ENST00000660652.1:ENST00000675522.1:ENST00000675183.1:ENST00000658861.1:ENST00000663991.1:ENST00000675044.1:ENST00000675435.1:ENST00000674639.1:ENST00000676069.1:ENST00000675532.1:ENST00000674762.1:ENST00000523151.6:ENST00000675948.1:ENST00000665364.1:ENST00000657251.1:ENST00000675166.1:ENST00000674883.1:ENST00000675867.1:ENST00000674580.1:ENST00000675393.1:ENST00000520048.1:ENST00000674906.1:ENST00000676030.1:ENST00000670588.1:ENST00000675072.1:ENST00000664936.1:ENST00000652914.1	lncRNA	lncRNA	lncRNA	lncRNA	3	56	2	2.64944	2.69731	2.74518	0.0152229	0.00481947	0.108535	0.060277
chr1	40206107	40206207	80416	0	+	0.34	(0.32,0.35]	chr1	10431	31	INTRON	INTRON	RLF	ENSG00000117000.9	ENST00000372771.5	protein_coding	protein_coding	protein_coding	protein_coding	5	98	2	2.63115	2.697275	2.7634	0.00608073	8.19858e-4	0.0676501	0.026165
chr1	8720987	8721087	372816	0	-	0.47	(0.44,0.476]	chr1	43545	179	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000656437.1:ENST00000659924.1:ENST00000480342.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	80	2	1.45853	2.69719	3.93585	0.0470887	1.04728e-4	0.152251	0.00863456
chr8	58555696	58555796	3757511	0	+	0.34	(0.32,0.35]	chr8	349434	20	INTRON	INTRON	SDCBP	ENSG00000137575.12	ENST00000522243.5:ENST00000447182.6:ENST00000413219.6:ENST00000424270.6:ENST00000523483.5:ENST00000520168.5:ENST00000260130.9:ENST00000519115.5:ENST00000522843.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	47	2	2.40308	2.697165	2.99125	0.0417732	0.00958447	0.161736	0.0820838
chr3	43712363	43712462	1410397	0	+	0.333333	(0.32,0.35]	chr3	147950	1	INTRON	INTRON	ABHD5	ENSG00000011198.10	ENST00000643520.1:ENST00000458276.7:ENST00000649763.1:ENST00000643140.1:ENST00000643500.1:ENST00000644371.2:ENST00000013894.3:ENST00000646378.1:ENST00000643477.1:ENST00000646799.1:ENST00000454293.2:ENST00000642351.1:ENST00000413300.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	140	2	2.52571	2.697035	2.86836	0.00250845	3.3041e-4	0.0446195	0.0161444
chr1	153638848	153638948	226757	0	+	0.46	(0.44,0.476]	chr1	25983	4	SS5_PROX	SS5_PROX:INTRON	CHTOP	ENSG00000160679.13	ENST00000368690.7:ENST00000614256.4:ENST00000368694.8:ENST00000495554.1:ENST00000403433.5:ENST00000368687.1:ENST00000368686.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	52	2	2.19078	2.69684	3.2029	0.0226089	0.00308681	0.117489	0.0510391
chr14	36925599	36925699	5875543	0	-	0.46	(0.44,0.476]	chr14	558013	502	INTRON	INTRON	SLC25A21	ENSG00000183032.12	ENST00000331299.6:ENST00000555449.5:ENST00000557611.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	52	2	2.19078	2.69684	3.2029	0.0226089	0.00308681	0.117489	0.0510391
chr17	35606240	35606340	6599728	0	+	0.47	(0.44,0.476]	chr17	642250	4	SS5_PROX	SS5_PROX:INTRON	AP2B1	ENSG00000006125.18	ENST00000589774.5:ENST00000616784.4:ENST00000621914.4:ENST00000620039.4:ENST00000616681.4:ENST00000621668.4:ENST00000610402.5:ENST00000612035.4:ENST00000591610.5:ENST00000590538.5:ENST00000614600.4:ENST00000612116.5:ENST00000618940.4:ENST00000593014.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	52	2	2.19078	2.69684	3.2029	0.0226089	0.00308681	0.117489	0.0510391
chr17	82186720	82186817	6852181	0	-	0.443299	(0.44,0.476]	chr17	679037	17	INTRON	INTRON	CCDC57	ENSG00000176155.21	ENST00000694881.1:ENST00000389641.9:ENST00000694882.1:ENST00000665763.1:ENST00000578910.2:ENST00000392343.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	52	2	2.19078	2.69684	3.2029	0.0226089	0.00308681	0.117489	0.0510391
chr4	82841340	82841439	2179573	0	-	0.474747	(0.44,0.476]	chr4	214267	100	INTRON	INTRON	SEC31A	ENSG00000138674.17	ENST00000395310.7:ENST00000513858.5:ENST00000348405.8:ENST00000503937.5:ENST00000448323.5:ENST00000311785.11:ENST00000509142.5:ENST00000443462.6:ENST00000500777.6:ENST00000505472.5:ENST00000355196.6:ENST00000508502.5:ENST00000264405.9:ENST00000505984.5:ENST00000511338.1:ENST00000515749.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	52	2	2.19078	2.69684	3.2029	0.0226089	0.00308681	0.117489	0.0510391
chr11	46116921	46117021	4945207	0	-	0.4	(0.378,0.408]	chr11	463384	243	INTRON	INTRON	PHF21A	ENSG00000135365.17	ENST00000676320.1:ENST00000323180.10:ENST00000530587.6:ENST00000693049.1:ENST00000690620.1:ENST00000418153.6:ENST00000525676.6:ENST00000689695.1:ENST00000685188.1:ENST00000532883.5:ENST00000524497.5:ENST00000693122.1:ENST00000529734.5:ENST00000529782.5:ENST00000688222.1:ENST00000690039.1:ENST00000533757.5:ENST00000525438.5:ENST00000692265.1:ENST00000527782.5:ENST00000532010.5:ENST00000528893.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	40	2	2.53503	2.696785	2.85854	0.0319942	0.0107837	0.13174	0.0920575
chr16	70387669	70387767	6510945	0	-	0.397959	(0.378,0.408]	chr16	630663	41	INTRON	INTRON	ST3GAL2	ENSG00000157350.13	ENST00000342907.3:ENST00000393640.8:ENST00000567822.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	40	2	2.53503	2.696785	2.85854	0.0319942	0.0107837	0.13174	0.0920575
chr17	47669572	47669624	6622786	0	+	0.384615	(0.378,0.408]	chr17	646055	1	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	KPNB1	ENSG00000108424.11	ENST00000535458.6:ENST00000583648.6:ENST00000290158.9:ENST00000540627.5:ENST00000582097.5:ENST00000583013.1:ENST00000677341.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	40	2	2.53503	2.696785	2.85854	0.0319942	0.0107837	0.13174	0.0920575
chr3	46967819	46967918	1679942	0	-	0.393939	(0.378,0.408]	chr3	171437	13	INTRON	INTRON	CCDC12	ENSG00000160799.12	ENST00000425441.5:ENST00000683445.1:ENST00000292314.6:ENST00000605358.5:ENST00000488069.5:ENST00000603885.5:ENST00000446836.5:ENST00000494655.5:ENST00000604164.5:ENST00000604181.1:ENST00000605875.1:ENST00000460035.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	40	2	2.53503	2.696785	2.85854	0.0319942	0.0107837	0.13174	0.0920575
chr3	60158034	60158134	1711194	0	-	0.38	(0.378,0.408]	chr3	176138	773	INTRON	INTRON	FHIT	ENSG00000189283.10	ENST00000492590.6:ENST00000476844.5:ENST00000468189.5:ENST00000488467.5	protein_coding	protein_coding	protein_coding	protein_coding	2	40	2	2.53503	2.696785	2.85854	0.0319942	0.0107837	0.13174	0.0920575
chr5	38980782	38980879	2604705	0	-	0.443299	(0.44,0.476]	chr5	247861	18	INTRON	INTRON	RICTOR	ENSG00000164327.13	ENST00000357387.8:ENST00000511516.5:ENST00000296782.9:ENST00000510711.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	63	2	1.71574	2.696565	3.67739	0.045256	3.8961e-4	0.149888	0.0177751
chr12	66168116	66168215	5352851	0	-	0.616162	(0.57,1]	chr12	511479	66	INTRON	INTRON	TMBIM4	ENSG00000155957.19	ENST00000358230.8:ENST00000544599.5:ENST00000398033.8:ENST00000633367.1:ENST00000286424.12:ENST00000545407.5:ENST00000542724.5:ENST00000545504.1:ENST00000534930.1:ENST00000542072.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	31	2	2.52405	2.696485	2.86892	0.0263139	0.00125753	0.133676	0.0323608
chr7	43651604	43651702	3525594	0	-	0.459184	(0.44,0.476]	chr7	328755	5	INTRON	INTRON	COA1	ENSG00000106603.20	ENST00000415076.6:ENST00000446330.6:ENST00000446564.5:ENST00000438444.5:ENST00000223336.11:ENST00000310564.10:ENST00000415798.5:ENST00000431651.5:ENST00000451651.5:ENST00000418140.5:ENST00000448704.5:ENST00000470156.1:ENST00000457939.1:ENST00000420441.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	128	2	2.32744	2.696485	3.06553	0.00170738	1.35514e-4	0.037419	0.0100405
chr22	20943224	20943323	7480776	0	+	0.40404	(0.378,0.408]	chr22	763096	86	INTRON	INTRON	CRKL	ENSG00000099942.13	ENST00000354336.8:ENST00000411769.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	101	2	1.82119	2.69646	3.57173	0.0214651	4.19615e-5	0.114274	0.00524985
chr6	31664840	31664921	3079099	0	-	0.432099	(0.408,0.44]	chr6	286899	1	UTR5	UTR5:EXON_MRNA	GPANK1	ENSG00000204438.11	ENST00000375896.9:ENST00000375906.5:ENST00000375900.8:ENST00000375895.6:ENST00000375893.6:ENST00000458083.5:ENST00000445768.5:ENST00000456540.1	protein_coding	protein_coding	protein_coding	protein_coding	6	99	2	2.41003	2.6963150000000002	2.9826	0.00211327	9.23082e-4	0.0415897	0.0278392
chr16	81451730	81451830	6405066	0	+	0.54	(0.515,0.57]	chr16	615026	58	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8	protein_coding	protein_coding	protein_coding	protein_coding	5	74	2	2.17039	2.6962849999999996	3.22218	0.00900252	2.98683e-4	0.0851009	0.0160416
chr10	73029866	73029966	4647165	0	-	0.28	[0,0.28]	chr10	427495	2	SS5_PROX	SS5_PROX:INTRON	P4HA1	ENSG00000122884.13	ENST00000394890.7:ENST00000307116.6:ENST00000373008.6:ENST00000440381.5:ENST00000263556.3	protein_coding	protein_coding	protein_coding	protein_coding	2	55	2	2.38757	2.696275	3.00498	0.0552962	0.00876063	0.165463	0.0846118
chr19	29978369	29978468	7047917	0	+	0.414141	(0.408,0.44]	chr19	702669	68	INTRON	INTRON	URI1	ENSG00000105176.18	ENST00000360605.8:ENST00000570564.5:ENST00000574233.5:ENST00000392271.6:ENST00000574110.5:ENST00000574666.5:ENST00000576442.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	40	2	2.18807	2.6962200000000003	3.20437	0.0708044	0.00306596	0.184528	0.0509893
chr2	131079095	131079194	1228948	0	-	0.424242	(0.408,0.44]	chr2	130987	68	INTRON	INTRON	FAM168B	ENSG00000152102.18	ENST00000389915.4:ENST00000409185.5	protein_coding	protein_coding	protein_coding	protein_coding	2	40	2	2.18807	2.6962200000000003	3.20437	0.0708044	0.00306596	0.184528	0.0509893
chr7	119739623	119739723	3628734	0	-	0.49	(0.476,0.515]	chr7	337319	343	INTRON	INTRON	LINC02476	ENSG00000225546.6	ENST00000660268.1:ENST00000431071.5	lncRNA	lncRNA	lncRNA	lncRNA	24	366	2	2.34052	2.69613	3.05174	1.17596e-4	1.86595e-6	0.00982393	8.32995e-4
chr20	37208348	37208448	7266430	0	+	0.35	(0.32,0.35]	chr20	738427	5	INTRON	INTRON	RPN2	ENSG00000118705.17	ENST00000456102.5:ENST00000373622.9:ENST00000373632.8:ENST00000237530.11	protein_coding	protein_coding	protein_coding	protein_coding	3	60	2	2.54408	2.6961000000000004	2.84812	0.0147575	0.00659077	0.0983813	0.0737338
chr13	19725949	19726049	5552370	0	-	0.47	(0.44,0.476]	chr13	530696	160	INTRON	INTRON	PSPC1	ENSG00000121390.19	ENST00000471658.5:ENST00000492741.5:ENST00000635562.1:ENST00000338910.9:ENST00000619300.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	160	2	2.33627	2.696035	3.0558	3.27769e-4	2.18249e-4	0.0160995	0.0135423
chr16	58597246	58597345	6496054	0	-	0.50505	(0.476,0.515]	chr16	628630	80	INTRON	INTRON	CNOT1	ENSG00000125107.19	ENST00000317147.10:ENST00000569240.5:ENST00000567188.5:ENST00000441024.6:ENST00000565605.5:ENST00000564557.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	52	2	1.99197	2.696	3.40003	0.039572	0.00139193	0.143072	0.0341261
chr1	193048645	193048745	612761	0	-	0.35	(0.32,0.35]	chr1	72474	186	INTRON	INTRON	UCHL5	ENSG00000116750.14	ENST00000367455.8:ENST00000367454.6:ENST00000367450.7:ENST00000367451.8:ENST00000367449.5:ENST00000367448.5:ENST00000421683.1	protein_coding	protein_coding	protein_coding	protein_coding	3	60	2	2.35591	2.6959400000000002	3.03597	0.0128129	0.00832487	0.0990564	0.0774402
chr13	27443324	27443421	5566653	0	-	0.340206	(0.32,0.35]	chr13	532065	19	INTRON	INTRON	MTIF3	ENSG00000122033.15	ENST00000381116.5:ENST00000381120.8:ENST00000461838.5:ENST00000460973.5:ENST00000471771.5:ENST00000493719.5:ENST00000485650.5:ENST00000485959.5:ENST00000484342.2:ENST00000464753.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	60	2	2.35591	2.6959400000000002	3.03597	0.0128129	0.00832487	0.0990564	0.0774402
chr2	47897501	47897601	1116034	0	-	0.53	(0.515,0.57]	chr2	119694	89	INTRON	INTRON	FBXO11	ENSG00000138081.22	ENST00000684712.1:ENST00000682451.1:ENST00000403359.8:ENST00000683894.1:ENST00000681999.1:ENST00000682975.1:ENST00000684085.1:ENST00000492225.5:ENST00000424163.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	98	2	2.51725	2.69587	2.87449	8.36453e-4	4.10541e-4	0.0263691	0.0186083
chrX	154816885	154816985	7915732	0	-	0.35	(0.32,0.35]	chrX	806191	115	INTRON	INTRON	MPP1	ENSG00000130830.15	ENST00000393529.5	protein_coding	protein_coding	protein_coding	protein_coding	16	206	2	1.3898	2.695865	4.00193	0.0161007	1.13425e-5	0.109464	0.00266877
chr1	23059467	23059567	44169	0	+	0.38	(0.378,0.408]	chr1	5294	3	SS5_PROX	SS5_PROX:INTRON	KDM1A	ENSG00000004487.18	ENST00000692214.1:ENST00000686934.1:ENST00000689853.1:ENST00000465864.2:ENST00000691256.1:ENST00000688122.1:ENST00000692056.1:ENST00000692853.1:ENST00000689366.1:ENST00000686270.1:ENST00000685102.1:ENST00000690627.1:ENST00000686771.1:ENST00000692209.1:ENST00000686339.1:ENST00000691813.1:ENST00000693156.1:ENST00000688235.1:ENST00000692975.1:ENST00000687202.1:ENST00000691682.1:ENST00000691404.1:ENST00000691694.1:ENST00000688680.1:ENST00000356634.7:ENST00000400181.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	67	2	1.78011	2.6958450000000003	3.61158	0.0356367	8.34292e-4	0.151629	0.0266389
chr3	43400529	43400629	1673218	0	-	0.43	(0.408,0.44]	chr3	170966	273	INTRON	INTRON	ANO10	ENSG00000160746.13	ENST00000292246.8:ENST00000350459.8:ENST00000396091.7:ENST00000414522.6:ENST00000451430.6:ENST00000448045.1	protein_coding	protein_coding	protein_coding	protein_coding	7	88	2	1.32496	2.6957649999999997	4.06657	0.0566224	5.10925e-5	0.167389	0.00585477
chr1	155663990	155664089	563060	0	-	0.414141	(0.408,0.44]	chr1	67145	22	INTRON	INTRON	YY1AP1	ENSG00000163374.20	ENST00000368339.9:ENST00000295566.8:ENST00000368330.6:ENST00000436865.5:ENST00000359205.9:ENST00000407221.5:ENST00000404643.5:ENST00000361140.8:ENST00000361831.9:ENST00000347088.9:ENST00000354691.9:ENST00000368340.9:ENST00000311573.9:ENST00000442834.6:ENST00000355499.9:ENST00000405763.7:ENST00000488784.5:ENST00000493625.5:ENST00000477470.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	52	2	2.33431	2.69568	3.05705	0.0129219	0.00658331	0.0990564	0.0701901
chr19	8483909	8484009	7011169	0	+	0.43	(0.408,0.44]	chr19	696206	3	INTRON	INTRON	HNRNPM	ENSG00000099783.12	ENST00000348943.7:ENST00000600092.5:ENST00000325495.9:ENST00000600806.5:ENST00000620401.4:ENST00000594907.5:ENST00000597270.1:ENST00000597081.1:ENST00000598603.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	67	2	2.6542	2.6956499999999997	2.7371	0.0227514	7.83328e-4	0.117618	0.0257505
chr12	102121489	102121589	5204871	0	+	0.3	(0.28,0.32]	chr12	492800	6	INTRON	INTRON	PARPBP	ENSG00000185480.12	ENST00000327680.7:ENST00000541394.5:ENST00000543784.5:ENST00000392909.7:ENST00000537257.5:ENST00000392911.6:ENST00000541668.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	147	2	2.27847	2.69563	3.11279	0.00516929	1.6215e-4	0.0631506	0.0109774
chr6	152973796	152973890	3249581	0	-	0.446809	(0.44,0.476]	chr6	301938	8	EXON_MRNA	EXON_MRNA:INTRON	FBXO5	ENSG00000112029.10	ENST00000477822.2:ENST00000367241.3:ENST00000229758.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	102	2	2.572	2.695605	2.81921	0.00173736	7.10539e-4	0.03851	0.0243894
chr8	102395989	102396088	4012589	0	-	0.444444	(0.44,0.476]	chr8	367237	340	INTRON	INTRON	UBR5	ENSG00000104517.13	ENST00000520539.6:ENST00000220959.8:ENST00000521922.5	protein_coding	protein_coding	protein_coding	protein_coding	8	127	2	2.52598	2.695595	2.86521	5.69284e-4	4.52247e-4	0.0220462	0.0192381
chrX	154094565	154094655	7913069	0	-	0.522222	(0.515,0.57]	chrX	805652	2	SS5_PROX	SS5_PROX:INTRON	MECP2	ENSG00000169057.24	ENST00000303391.11:ENST00000453960.7:ENST00000628176.2:ENST00000407218.5:ENST00000369957.5:ENST00000631210.1:ENST00000496908.5:ENST00000415944.3:ENST00000676382.1:ENST00000637533.1:ENST00000627864.1:ENST00000637467.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	60	2	2.62817	2.695585	2.763	0.004048	0.00257143	0.0578376	0.045134
chr19	52208161	52208261	7094445	0	+	0.52	(0.515,0.57]	chr19	711187	17	INTRON	INTRON	PPP2R1A	ENSG00000105568.18	ENST00000490868.5:ENST00000454220.6:ENST00000322088.11:ENST00000468280.5:ENST00000462990.5:ENST00000495876.5:ENST00000473455.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	46	2	2.60899	2.695535	2.78208	0.0232669	0.00209264	0.118148	0.0424943
chr12	50445318	50445417	5136790	0	+	0.40404	(0.378,0.408]	chr12	484418	33	INTRON	INTRON	LARP4	ENSG00000161813.23	ENST00000293618.12:ENST00000429001.7:ENST00000398473.7:ENST00000522085.5:ENST00000518444.5:ENST00000518561.5:ENST00000347328.9:ENST00000520064.2:ENST00000521120.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	99	2	2.46596	2.695525	2.92509	0.00167715	0.00125753	0.0370386	0.03295
chr1	44755245	44755345	92471	0	+	0.49	(0.476,0.515]	chr1	12289	4	SS5_PROX	SS5_PROX:INTRON	KIF2C	ENSG00000142945.13	ENST00000452259.5:ENST00000493027.5:ENST00000372224.9:ENST00000455186.5:ENST00000372217.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	152	2	1.69492	2.6955	3.69608	0.0127656	2.56139e-6	0.0926667	0.00101846
chr12	132822711	132822811	5450160	0	-	0.49	(0.476,0.515]	chr12	522110	4	SS3_PROX	SS3_PROX:INTRON	GOLGA3:CHFR	ENSG00000090615.16:ENSG00000072609.18	ENST00000204726.9:ENST00000450791.8:ENST00000688114.1:ENST00000691696.1:ENST00000691636.1:ENST00000690897.1:ENST00000456883.7:ENST00000545875.4:ENST00000688251.1:ENST00000686751.1:ENST00000685580.1:ENST00000687165.1:ENST00000692384.1:ENST00000685120.1:ENST00000689813.1:ENST00000693112.1:ENST00000685450.1:ENST00000534967.2:ENST00000537317.2:ENST00000690178.1:ENST00000652603.2:ENST00000541341.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	69	2	2.62236	2.695455	2.76855	0.00517	0.00244302	0.0631506	0.0456956
chr5	131755772	131755872	2720332	0	-	0.48	(0.476,0.515]	chr5	255730	107	INTRON	INTRON	FNIP1	ENSG00000217128.13	ENST00000510461.6:ENST00000307954.12:ENST00000307968.11:ENST00000511848.1	protein_coding	protein_coding	protein_coding	protein_coding	6	95	2	2.51682	2.69544	2.87406	0.00188729	9.59562e-4	0.0391691	0.0284801
chr21	46242014	46242112	7420908	0	+	0.336735	(0.32,0.35]	chr21	756645	13	EXON_LNCRNA	EXON_LNCRNA:INTRON	MCM3AP-AS1	ENSG00000215424.10	ENST00000455567.2:ENST00000590829.5:ENST00000669476.1:ENST00000656253.1:ENST00000654493.1:ENST00000591223.5:ENST00000664725.1:ENST00000670190.1:ENST00000414659.5:ENST00000432735.5:ENST00000444998.1:ENST00000421927.1:ENST00000662666.1:ENST00000588753.1	lncRNA	lncRNA	lncRNA	lncRNA	4	81	2	2.53107	2.695405	2.85974	0.00860484	0.00186579	0.0784134	0.0399675
chr17	62049348	62049447	6810721	0	-	0.343434	(0.32,0.35]	chr17	672946	134	INTRON	INTRON	MED13	ENSG00000108510.10	ENST00000397786.7	protein_coding	protein_coding	protein_coding	protein_coding	6	95	2	2.22834	2.695355	3.16237	0.00550276	0.00242823	0.0648867	0.0455188
chr10	91970056	91970156	4489202	0	+	0.36	(0.35,0.378]	chr10	413359	29	INTRON	INTRON	BTAF1	ENSG00000095564.15	ENST00000265990.12:ENST00000471217.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	57	2	1.93432	2.695265	3.45621	0.0481438	0.0011842	0.153019	0.031662
chr14	24096220	24096305	5658377	0	+	0.376471	(0.35,0.378]	chr14	539666	5	INTRON	INTRON	PCK2	ENSG00000100889.12	ENST00000559250.5:ENST00000560736.5:ENST00000396973.8:ENST00000559837.5:ENST00000560106.5:ENST00000545054.6:ENST00000216780.9:ENST00000561286.5:ENST00000561050.5:ENST00000558674.5:ENST00000560657.1:ENST00000559584.5:ENST00000558096.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	57	2	1.93432	2.695265	3.45621	0.0481438	0.0011842	0.153019	0.031662
chr2	95876812	95876912	1178531	0	-	0.37	(0.35,0.378]	chr2	125772	3	SS3_PROX	SS3_PROX:INTRON	ANKRD36C	ENSG00000174501.15	ENST00000295246.7:ENST00000456556.5:ENST00000531153.5:ENST00000534304.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	42	2	2.66547	2.6952249999999998	2.72498	0.0233639	0.0168499	0.118323	0.11068
chr4	139064825	139064924	2246210	0	-	0.373737	(0.35,0.378]	chr4	219542	24	INTRON	INTRON	ELF2	ENSG00000109381.21	ENST00000394235.6:ENST00000686138.1:ENST00000379550.5:ENST00000358635.7:ENST00000379549.7:ENST00000510408.5:ENST00000512627.1:ENST00000514577.5:ENST00000504314.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	42	2	2.66547	2.6952249999999998	2.72498	0.0233639	0.0168499	0.118323	0.11068
chr19	52272394	52272492	7094708	0	+	0.408163	(0.378,0.408]	chr19	711251	24	INTRON	INTRON	ZNF766	ENSG00000196214.11	ENST00000439461.6:ENST00000593703.1:ENST00000599581.5:ENST00000601711.5	protein_coding	protein_coding	protein_coding	protein_coding	5	77	2	2.01071	2.695205	3.3797	0.0111045	0.00154501	0.0876025	0.0362716
chr5	28893524	28893624	2330685	0	+	0.39	(0.378,0.408]	chr5	225135	830	INTRON	INTRON	LINC02109	ENSG00000259786.7	ENST00000658190.1	lncRNA	lncRNA	lncRNA	lncRNA	2	40	2	2.46373	2.69519	2.92665	0.0382831	0.0086017	0.141795	0.083729
chr18	73254099	73254198	6988516	0	-	0.313131	(0.28,0.32]	chr18	691712	11	INTRON	INTRON	LINC02864	ENSG00000263711.6	ENST00000584544.5:ENST00000581011.5:ENST00000581862.6:ENST00000669547.1:ENST00000661525.1:ENST00000583405.5:ENST00000582571.2:ENST00000667943.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	9	159	2	2.07063	2.695105	3.31958	0.0026131	4.5281e-4	0.0470772	0.0196892
chr14	31020720	31020820	5857817	0	-	0.48	(0.476,0.515]	chr14	556512	56	INTRON	INTRON	STRN3	ENSG00000196792.12	ENST00000355683.9:ENST00000357479.10:ENST00000555358.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	158	2	2.65262	2.6950700000000003	2.73752	4.15782e-4	1.21779e-4	0.0188225	0.0094308
chr19	10875814	10875914	7015010	0	+	0.39	(0.378,0.408]	chr19	697070	35	INTRON	INTRON	CARM1	ENSG00000142453.12	ENST00000327064.9:ENST00000588947.5:ENST00000590699.5:ENST00000344150.8:ENST00000586221.5:ENST00000590039.5:ENST00000589693.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	40	2	2.60296	2.695005	2.78705	0.0267851	0.0135539	0.123349	0.101363
chr5	72143808	72143907	2385946	0	+	0.40404	(0.378,0.408]	chr5	230228	270	INTRON	INTRON	MAP1B	ENSG00000131711.15	ENST00000512974.5:ENST00000296755.12:ENST00000513526.6:ENST00000511641.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	40	2	2.60296	2.695005	2.78705	0.0267851	0.0135539	0.123349	0.101363
chr1	167788820	167788920	248445	0	+	0.43	(0.408,0.44]	chr1	29523	10	UTR3	UTR3:EXON_MRNA	MPZL1	ENSG00000197965.12	ENST00000359523.7:ENST00000392121.7	protein_coding	protein_coding	protein_coding	protein_coding	34	517	2	2.24282	2.69498	3.14714	5.27166e-5	1.17564e-6	0.00592337	6.89657e-4
chr7	111407401	111407501	3622560	0	-	0.28	[0,0.28]	chr7	337108	146	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000452895.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding	5	122	2	2.64877	2.69498	2.74119	0.00757778	0.00126858	0.0749063	0.0330485
chr13	20779425	20779525	5555085	0	-	0.45	(0.44,0.476]	chr13	530905	22	UTR3	UTR3:EXON_MRNA	XPO4	ENSG00000132953.18	ENST00000255305.11	protein_coding	protein_coding	protein_coding	protein_coding	6	80	2	1.63371	2.694895	3.75608	0.0271664	2.6487e-4	0.123904	0.0144071
chrX	48523108	48523198	7658427	0	+	0.488889	(0.476,0.515]	chrX	783762	5	INTRON	INTRON	EBP	ENSG00000147155.11	ENST00000276096.10:ENST00000498425.1:ENST00000495186.6:ENST00000446158.5:ENST00000414061.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	83	2	2.24612	2.6948749999999997	3.14363	0.00799949	4.25082e-4	0.0766625	0.018441
chr12	111597248	111597348	5413212	0	-	0.33	(0.32,0.35]	chr12	516942	1	SS5_PROX	SS5_PROX:INTRON	ATXN2	ENSG00000204842.18	ENST00000642389.2:ENST00000608853.5:ENST00000672613.1:ENST00000673436.1:ENST00000643669.2:ENST00000616825.4:ENST00000389153.10:ENST00000550104.5:ENST00000483311.6:ENST00000672335.1:ENST00000673557.1:ENST00000673283.1:ENST00000673449.1:ENST00000535949.5:ENST00000542287.6:ENST00000644883.1:ENST00000647305.1:ENST00000671792.1:ENST00000392645.6:ENST00000672105.1:ENST00000549455.1:ENST00000548492.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	187	2	2.68077	2.694755	2.70874	8.1649e-4	1.16796e-4	0.0264074	0.00929802
chr3	37362798	37362897	1396978	0	+	0.59596	(0.57,1]	chr3	146465	11	INTRON	INTRON	GOLGA4	ENSG00000144674.17	ENST00000444882.5:ENST00000356847.8:ENST00000361924.7:ENST00000437131.1	protein_coding	protein_coding	protein_coding	protein_coding	4	34	2	2.39221	2.69475	2.99729	0.00538023	0.00352602	0.0642754	0.0546236
chr12	103774575	103774674	5401125	0	-	0.585859	(0.57,1]	chr12	515204	24	UTR3	UTR3:EXON_MRNA:INTRON	NT5DC3	ENSG00000111696.12	ENST00000447799.5:ENST00000392876.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	72	2	2.16585	2.694705	3.22356	0.00139717	2.85055e-5	0.0340865	0.00423282
chr9	137104524	137104623	4222833	0	+	0.424242	(0.408,0.44]	chr9	387932	30	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MAN1B1	ENSG00000177239.16	ENST00000682881.1:ENST00000683324.1:ENST00000684138.1:ENST00000683135.1:ENST00000542372.2:ENST00000371587.9:ENST00000684366.1:ENST00000684229.1:ENST00000683355.1:ENST00000682117.1:ENST00000683475.1:ENST00000682425.1:ENST00000684645.1:ENST00000683979.1:ENST00000371589.9:ENST00000535144.6:ENST00000684272.1:ENST00000475449.7:ENST00000684759.1:ENST00000545539.6:ENST00000684144.1:ENST00000683987.1:ENST00000682212.1:ENST00000544448.6:ENST00000684297.1:ENST00000474902.5:ENST00000682964.1:ENST00000535028.6:ENST00000536349.6:ENST00000684336.1:ENST00000540391.5:ENST00000480100.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	101	2	2.42404	2.69468	2.96532	0.00413548	2.36857e-4	0.0566868	0.0136195
chr17	80293223	80293322	6683391	0	+	0.484848	(0.476,0.515]	chr17	652993	10	INTRON	INTRON	RNF213	ENSG00000173821.20	ENST00000582970.6:ENST00000508628.6:ENST00000319921.4:ENST00000559070.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	93	2	1.78305	2.69466	3.60627	0.00766879	7.49088e-4	0.0780566	0.0251179
chr4	24537864	24537963	2118532	0	-	0.222222	[0,0.28]	chr4	209201	8	EXON_LNCRNA	EXON_LNCRNA:INTRON	DHX15	ENSG00000109606.13	ENST00000336812.5:ENST00000508032.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	170	2	2.48489	2.694435	2.90398	0.00548173	2.49497e-4	0.0648867	0.0140229
chr11	120425995	120426094	4877105	0	+	0.353535	(0.35,0.378]	chr11	455834	12	INTRON	INTRON	ARHGEF12	ENSG00000196914.9	ENST00000397843.7:ENST00000356641.7:ENST00000532993.5:ENST00000529970.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	91	2	2.5337	2.69443	2.85516	0.00239229	0.0022093	0.0440612	0.0435144
chr1	162568733	162568832	238390	0	+	0.414141	(0.408,0.44]	chr1	28704	20	INTRON	INTRON	UAP1	ENSG00000117143.14	ENST00000367925.6:ENST00000367926.9	protein_coding	protein_coding	protein_coding	protein_coding	4	70	2	2.64944	2.694425	2.73941	0.00481947	0.002744	0.060277	0.0484022
chr19	18867185	18867280	7033705	0	+	0.578947	(0.57,1]	chr19	701087	8	UTR3	UTR3:EXON_MRNA	UPF1	ENSG00000005007.13	ENST00000262803.10:ENST00000599848.5:ENST00000596842.5:ENST00000600689.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	50	2	2.2837	2.694065	3.10443	0.00256797	3.67483e-4	0.0466761	0.017788000000000002
chr19	36545480	36545577	7174618	0	-	0.43299	(0.408,0.44]	chr19	725059	18	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	ZNF529	ENSG00000186020.13	ENST00000452073.2:ENST00000591340.6:ENST00000590656.1:ENST00000334116.7	protein_coding	protein_coding	protein_coding	protein_coding	8	136	2	2.50424	2.694045	2.88385	0.00101099	2.08663e-4	0.0293364	0.0131276
chr1	66968521	66968620	139886	0	+	0.383838	(0.378,0.408]	chr1	15688	50	INTRON	INTRON	MIER1	ENSG00000198160.15	ENST00000355977.10:ENST00000371018.7:ENST00000357692.6:ENST00000371016.5:ENST00000371014.5:ENST00000401041.6:ENST00000355356.3:ENST00000401042.7	protein_coding	protein_coding	protein_coding	protein_coding	3	54	2	2.65815	2.69404	2.72993	0.0188736	0.00391167	0.108861	0.0569957
chr8	67198933	67199033	3962328	0	-	0.38	(0.378,0.408]	chr8	363533	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA:INTRON	ARFGEF1	ENSG00000066777.9	ENST00000520381.5:ENST00000518789.5:ENST00000262215.8:ENST00000518290.1:ENST00000517955.2:ENST00000522878.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	54	2	2.65815	2.69404	2.72993	0.0188736	0.00391167	0.108861	0.0569957
chr9	97996171	97996271	4173168	0	+	0.3	(0.28,0.32]	chr9	380275	10	INTRON	INTRON	ANP32B	ENSG00000136938.9	ENST00000339399.5:ENST00000473205.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	65	2	2.51426	2.69404	2.87382	0.014868	0.00781326	0.0989021	0.0788246
chr10	113914308	113914407	4527452	0	+	0.525253	(0.515,0.57]	chr10	417479	59	UTR3	UTR3:EXON_MRNA	NHLRC2	ENSG00000196865.4	ENST00000369301.3	protein_coding	protein_coding	protein_coding	protein_coding	3	45	2	2.32967	2.69403	3.05839	0.0133671	0.00485936	0.0946278	0.0640618
chr6	17621274	17621373	3065336	0	-	0.363636	(0.35,0.378]	chr6	284764	42	INTRON	INTRON	NUP153	ENSG00000124789.12	ENST00000613258.4:ENST00000537253.5:ENST00000262077.3	protein_coding	protein_coding	protein_coding	protein_coding	5	79	2	1.84611	2.6939849999999996	3.54186	0.0204148	8.14353e-4	0.110862	0.02604
chr15	100572161	100572257	6268721	0	-	0.364583	(0.35,0.378]	chr15	597865	2	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	LINS1	ENSG00000140471.17	ENST00000560783.1:ENST00000314742.13:ENST00000559169.1:ENST00000559149.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	44	2	2.39746	2.69395	2.99044	0.041314	0.00894806	0.161534	0.0799922
chr8	60277098	60277197	3956860	0	-	0.363636	(0.35,0.378]	chr8	362985	107	INTRON	INTRON	CA8	ENSG00000178538.10	ENST00000317995.5:ENST00000524872.5:ENST00000529918.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	44	2	2.39746	2.69395	2.99044	0.041314	0.00894806	0.161534	0.0799922
chr10	928029	928129	4542551	0	-	0.45	(0.44,0.476]	chr10	419310	32	INTRON	INTRON	LARP4B	ENSG00000107929.16	ENST00000316157.8:ENST00000690516.1:ENST00000476529.5:ENST00000406525.6:ENST00000481118.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	52	2	2.02558	2.6939450000000003	3.36231	0.0363567	0.00161678	0.138959	0.0369204
chr21	36347091	36347188	7403969	0	+	0.309278	(0.28,0.32]	chr21	754318	17	INTRON	INTRON	MORC3	ENSG00000159256.13	ENST00000400485.6:ENST00000487909.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	49	2	2.2609	2.69385	3.1268	0.0671429	0.00508956	0.183051	0.0646039
chr22	29275916	29276012	7496141	0	+	0.28125	(0.28,0.32]	chr22	764814	4	EXON_MRNA	EXON_MRNA:INTRON	EWSR1	ENSG00000182944.18	ENST00000629659.2:ENST00000332050.10:ENST00000444626.5:ENST00000447973.5:ENST00000436425.5:ENST00000397938.7:ENST00000406548.5:ENST00000437155.6:ENST00000415761.5:ENST00000331029.11:ENST00000483415.5:ENST00000414183.6:ENST00000333395.10:ENST00000332035.10:ENST00000455726.5:ENST00000479135.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	49	2	2.2609	2.69385	3.1268	0.0671429	0.00508956	0.183051	0.0646039
chr5	139294364	139294446	2499385	0	+	0.573171	(0.57,1]	chr5	238907	3	SS5_PROX	SS5_PROX:INTRON	MATR3	ENSG00000280987.4:ENSG00000015479.20	ENST00000509990.5:ENST00000506147.5:ENST00000512107.5:ENST00000361059.7:ENST00000394800.6:ENST00000502929.5:ENST00000504203.5:ENST00000514694.5:ENST00000509644.5:ENST00000505016.2:ENST00000502394.1:ENST00000512876.5:ENST00000513678.5:ENST00000513121.1:ENST00000504045.5:ENST00000504311.5:ENST00000502499.5:ENST00000510056.5:ENST00000511249.5:ENST00000394805.8:ENST00000507860.1:ENST00000509918.5:ENST00000503811.5:ENST00000511978.5:ENST00000618441.5:ENST00000508689.1:ENST00000514528.5:ENST00000504643.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	21	168	2	2.69197	2.693835	2.6957	5.44687e-6	3.30704e-6	0.00173803	0.00118585
chr13	19862966	19863061	5553352	0	-	0.694737	(0.57,1]	chr13	530776	1	SS5_PROX	SS5_PROX:INTRON	ZMYM5	ENSG00000132950.19	ENST00000337963.9:ENST00000535942.5:ENST00000382907.8:ENST00000382905.8:ENST00000467542.5:ENST00000495534.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	29	2	1.9042	2.693785	3.48337	0.0476976	6.20854e-4	0.153019	0.0223951
chr10	920687	920787	4542477	0	-	0.47	(0.44,0.476]	chr10	419304	173	INTRON	INTRON	LARP4B	ENSG00000107929.16	ENST00000316157.8:ENST00000690516.1:ENST00000476529.5:ENST00000406525.6:ENST00000481118.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	52	2	2.24189	2.69374	3.14559	0.0193405	0.00384923	0.108861	0.0562562
chr9	369740	369838	4089641	0	+	0.44898	(0.44,0.476]	chr9	372519	4	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DOCK8	ENSG00000107099.18	ENST00000432829.7:ENST00000382329.2:ENST00000453981.5:ENST00000483757.6:ENST00000469391.5:ENST00000495184.5:ENST00000382331.6:ENST00000685949.1:ENST00000682260.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	52	2	2.24189	2.69374	3.14559	0.0193405	0.00384923	0.108861	0.0562562
chr20	5592627	5592726	7312158	0	-	0.353535	(0.35,0.378]	chr20	744600	60	INTRON	INTRON	GPCPD1	ENSG00000125772.14	ENST00000379019.7:ENST00000481690.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	134	2	2.65531	2.6934750000000003	2.73164	0.00387645	1.37276e-4	0.0543578	0.0100829
chr1	25452382	25452480	48164	0	+	0.27551	[0,0.28]	chr1	5931	31	INTRON	INTRON	MACO1	ENSG00000204178.11	ENST00000399766.7:ENST00000374343.5:ENST00000647928.1:ENST00000470035.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	90	2	2.37401	2.69344	3.01287	0.0115634	0.00568456	0.0889104	0.0678837
chrX	136912053	136912151	7727486	0	+	0.510204	(0.476,0.515]	chrX	790754	19	INTRON	INTRON	TM9SF5P	ENSG00000234062.9	ENST00000650669.2:ENST00000687469.1:ENST00000431464.6:ENST00000685550.1:ENST00000685929.1:ENST00000424306.5:ENST00000687978.1:ENST00000688713.1:ENST00000693626.1:ENST00000686432.1:ENST00000693698.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	7	123	2	2.45107	2.693355	2.93564	0.00301722	1.45166e-4	0.0507519	0.0110154
chr4	1811968	1812067	2095304	0	-	0.424242	(0.408,0.44]	chr4	207261	6	UTR3	UTR3:EXON_MRNA	LETM1	ENSG00000168924.15	ENST00000302787.3	protein_coding	protein_coding	protein_coding	protein_coding	7	131	2	1.92871	2.693315	3.45792	0.0127189	2.47596e-5	0.0986242	0.00409416
chr10	67900794	67900894	4440564	0	+	0.32	(0.28,0.32]	chr10	409441	89	INTRON	INTRON	SIRT1	ENSG00000096717.12	ENST00000212015.11:ENST00000432464.5:ENST00000473922.1:ENST00000406900.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	49	2	2.60656	2.6933	2.78004	0.0256827	0.0193244	0.133676	0.108861
chr12	22047462	22047562	5094544	0	+	0.3	(0.28,0.32]	chr12	481172	5	INTRON	INTRON	CMAS	ENSG00000111726.13	ENST00000229329.7:ENST00000534981.5:ENST00000535610.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	49	2	2.60656	2.6933	2.78004	0.0256827	0.0193244	0.133676	0.108861
chr16	72478782	72478882	6517442	0	-	0.29	(0.28,0.32]	chr16	631323	510	INTRON	INTRON	LINC01572	ENSG00000261008.8	ENST00000624829.4:ENST00000561611.2:ENST00000656218.1:ENST00000666555.2:ENST00000664155.1:ENST00000657725.1	lncRNA	lncRNA	lncRNA	lncRNA	2	49	2	2.60656	2.6933	2.78004	0.0256827	0.0193244	0.133676	0.108861
chr2	235527538	235527638	1041672	0	+	0.37	(0.35,0.378]	chr2	111222	26	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1:ENST00000402604.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	209	2	2.38967	2.69328	2.99689	6.80585e-4	3.23681e-5	0.0238882	0.00453487
chr5	159189629	159189728	2758987	0	-	0.272727	[0,0.28]	chr5	260356	72	INTRON	INTRON	RNF145	ENSG00000145860.12	ENST00000424310.7:ENST00000519865.5:ENST00000274542.6:ENST00000611185.4:ENST00000521606.6:ENST00000518802.5:ENST00000520638.1:ENST00000520548.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	104	2	2.1357	2.6932799999999997	3.25086	0.0338175	4.54073e-4	0.134476	0.0192381
chr16	3704634	3704734	6434347	0	-	0.46	(0.44,0.476]	chr16	619375	3	SS3_PROX	SS3_PROX:INTRON	TRAP1	ENSG00000126602.11	ENST00000246957.10:ENST00000538171.5:ENST00000571804.5:ENST00000574941.5:ENST00000576106.5:ENST00000571011.1:ENST00000570403.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	52	2	2.21079	2.6932549999999997	3.17572	0.0194581	0.00427037	0.119831	0.0573912
chr15	58701274	58701373	6193029	0	-	0.323232	(0.32,0.35]	chr15	589976	25	INTRON	INTRON	ADAM10	ENSG00000137845.15	ENST00000260408.8:ENST00000402627.5:ENST00000561288.1:ENST00000559053.1:ENST00000558733.5:ENST00000439637.5:ENST00000497846.5:ENST00000558004.1:ENST00000560608.5:ENST00000561149.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	45	2	2.30673	2.6932400000000003	3.07975	0.0584434	0.00554235	0.167723	0.0674105
chr7	156879272	156879372	3687879	0	-	0.34	(0.32,0.35]	chr7	342096	420	INTRON	INTRON	LMBR1	ENSG00000105983.23	ENST00000353442.10:ENST00000415428.5:ENST00000454132.5:ENST00000434503.5:ENST00000430278.5:ENST00000434278.5:ENST00000444719.5:ENST00000461469.5:ENST00000414218.1:ENST00000434453.1:ENST00000498034.5:ENST00000433968.5:ENST00000485985.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	45	2	2.30673	2.6932400000000003	3.07975	0.0584434	0.00554235	0.167723	0.0674105
chr21	6492479	6492573	7425401	0	-	0.319149	(0.28,0.32]	chr21	757477	3	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ENSG00000275895	ENSG00000275895.7	ENST00000610664.5:ENST00000623375.3:ENST00000639996.1:ENST00000620065.4:ENST00000624739.1:ENST00000619610.2:ENST00000636315.1:ENST00000637031.1:ENST00000636177.1:ENST00000636403.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	106	2	2.61764	2.693235	2.76883	0.00414663	0.00179526	0.0568239	0.0392772
chr12	91465536	91465636	5383871	0	-	0.21	[0,0.28]	chr12	513479	658	INTRON	INTRON	ENSG00000289605	ENSG00000289605.1	ENST00000685093.1	lncRNA	lncRNA	lncRNA	lncRNA	4	90	2	1.99345	2.69323	3.39301	0.0211881	0.00353745	0.123133	0.0528929
chr11	68514328	68514427	4817870	0	+	0.363636	(0.35,0.378]	chr11	448913	87	INTRON	INTRON	PPP6R3	ENSG00000110075.15	ENST00000530427.5:ENST00000528635.5:ENST00000529907.5:ENST00000533127.5:ENST00000534534.5:ENST00000529344.5:ENST00000524845.5:ENST00000393800.7:ENST00000265637.8:ENST00000524904.5:ENST00000393801.7:ENST00000265636.9:ENST00000529710.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	57	2	2.66547	2.6932	2.72093	0.0233639	0.00314173	0.118323	0.0514466
chr8	123352717	123352816	4042185	0	-	0.373737	(0.35,0.378]	chr8	368721	29	INTRON	INTRON	ATAD2	ENSG00000156802.13	ENST00000287394.10:ENST00000517666.5:ENST00000521903.5:ENST00000519124.5:ENST00000521496.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	56	2	2.39583	2.693135	2.99044	0.0107976	0.00894806	0.0920575	0.0799922
chr1	29007081	29007180	59887	0	+	0.424242	(0.408,0.44]	chr1	7649	94	INTRON	INTRON	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000647918.1:ENST00000646800.1:ENST00000644342.1:ENST00000646189.1:ENST00000482464.6:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000646260.1:ENST00000373798.5:ENST00000644600.1:ENST00000649674.1:ENST00000643173.1:ENST00000343067.9:ENST00000644780.1:ENST00000650265.1:ENST00000648181.1:ENST00000643604.1:ENST00000648891.1:ENST00000373797.2:ENST00000349460.9:ENST00000645184.1:ENST00000645111.1:ENST00000643302.1:ENST00000645999.1:ENST00000642643.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	132	2	2.41003	2.693125	2.97622	0.00211327	7.35724e-5	0.0415897	0.00714826
chr1	96729679	96729779	168020	0	+	0.33	(0.32,0.35]	chr1	18215	57	INTRON	INTRON	PTBP2	ENSG00000117569.19	ENST00000482253.5:ENST00000675735.1:ENST00000609116.5:ENST00000674951.1:ENST00000675080.1:ENST00000426398.3:ENST00000460706.5:ENST00000370197.5:ENST00000370198.5:ENST00000476419.5:ENST00000676292.1:ENST00000676096.1:ENST00000675365.1:ENST00000674579.1:ENST00000675401.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	213	2	2.42467	2.69298	2.96129	5.70244e-4	1.0715e-4	0.0217398	0.00927469
chr2	53892107	53892207	1119742	0	-	0.33	(0.32,0.35]	chr2	119908	15	INTRON	INTRON	PSME4	ENSG00000068878.15	ENST00000404125.6:ENST00000389993.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	103	2	2.0706	2.692965	3.31533	0.00327434	0.00323121	0.0526715	0.0507087
chr11	70305328	70305428	4820758	0	+	0.42	(0.408,0.44]	chr11	449385	209	INTRON	INTRON	PPFIA1	ENSG00000131626.19	ENST00000253925.12:ENST00000389547.7:ENST00000532504.5:ENST00000530746.1:ENST00000532024.1:ENST00000648755.1:ENST00000644155.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	39	2	2.36073	2.69293	3.02513	0.0481658	0.0059965	0.153019	0.0700606
chr20	31746935	31747035	7253737	0	+	0.41	(0.408,0.44]	chr20	736731	39	INTRON	INTRON	TPX2	ENSG00000088325.16	ENST00000340513.4:ENST00000300403.11	protein_coding	protein_coding	protein_coding	protein_coding	2	39	2	2.36073	2.69293	3.02513	0.0481658	0.0059965	0.153019	0.0700606
chr7	135599687	135599785	3428753	0	+	0.428571	(0.408,0.44]	chr7	319705	4	INTRON	INTRON	NUP205	ENSG00000155561.15	ENST00000285968.11:ENST00000462316.5:ENST00000607647.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	39	2	2.36073	2.69293	3.02513	0.0481658	0.0059965	0.153019	0.0700606
chr7	152380161	152380261	3680735	0	-	0.44	(0.408,0.44]	chr7	341660	211	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000682301.1:ENST00000452749.2:ENST00000680867.1:ENST00000683800.1:ENST00000684278.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	54	2	1.74775	2.6928	3.63785	0.0735403	4.70012e-4	0.190238	0.0196294
chr22	44028272	44028372	7528383	0	+	0.34	(0.32,0.35]	chr22	769737	15	INTRON	INTRON	PARVB	ENSG00000188677.15	ENST00000406477.7:ENST00000338758.12:ENST00000402876.3:ENST00000619710.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	45	2	2.64129	2.69272	2.74415	0.0222819	0.0198267	0.124303	0.109608
chr1	231418775	231418875	656224	0	-	0.5	(0.476,0.515]	chr1	77808	443	INTRON	INTRON	EGLN1:ENSG00000287856	ENSG00000135766.9:ENSG00000287856.1	ENST00000667629.1:ENST00000366641.4:ENST00000653908.1:ENST00000653198.1:ENST00000658954.1:ENST00000670301.1:ENST00000662216.1:ENST00000654803.1:ENST00000476717.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	41	2	2.28264	2.69264	3.10264	0.0534132	0.00543163	0.179876	0.0645052
chr11	3742610	3742710	4894612	0	-	0.47	(0.44,0.476]	chr11	458864	69	INTRON	INTRON	NUP98	ENSG00000110713.17	ENST00000359171.8:ENST00000324932.12:ENST00000650171.1:ENST00000355260.7:ENST00000397004.8:ENST00000397007.8:ENST00000527104.5:ENST00000529379.1:ENST00000397013.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	100	2	2.44812	2.69258	2.93704	0.00368597	2.76819e-4	0.0535094	0.0148174
chr2	111437307	111437407	1211223	0	-	0.34	(0.32,0.35]	chr2	128899	65	INTRON	INTRON	MIR4435-2HG	ENSG00000172965.17	ENST00000645030.2:ENST00000642191.1:ENST00000673798.1:ENST00000645051.2:ENST00000673649.1:ENST00000669658.1:ENST00000669917.1:ENST00000661559.1:ENST00000653687.1:ENST00000667670.1:ENST00000609220.2:ENST00000656760.1:ENST00000609902.6:ENST00000666683.1:ENST00000674070.1:ENST00000662335.1:ENST00000664422.1:ENST00000673775.1:ENST00000674092.1:ENST00000673958.1:ENST00000658936.1:ENST00000662635.1:ENST00000666204.1:ENST00000659458.1:ENST00000664443.1:ENST00000670295.1:ENST00000661655.1:ENST00000666390.1:ENST00000659079.1:ENST00000660442.1:ENST00000664009.1:ENST00000439362.6:ENST00000654473.1:ENST00000664999.1:ENST00000673728.1:ENST00000659791.1:ENST00000666144.1:ENST00000659933.1:ENST00000670715.1:ENST00000653568.1:ENST00000643013.1:ENST00000673866.1:ENST00000443467.6:ENST00000669875.1:ENST00000673653.1:ENST00000673988.1:ENST00000661945.1:ENST00000669515.1:ENST00000431385.6:ENST00000656416.1:ENST00000674037.1:ENST00000432818.5:ENST00000674013.1:ENST00000444301.5:ENST00000673964.1:ENST00000673845.1:ENST00000673756.1:ENST00000673960.1:ENST00000673804.1:ENST00000673632.1:ENST00000453478.2:ENST00000673937.1:ENST00000673654.1:ENST00000409569.2:ENST00000674087.1:ENST00000419736.5:ENST00000673840.1:ENST00000674045.1:ENST00000673821.1:ENST00000643766.1:ENST00000308604.5:ENST00000674026.1:ENST00000604981.5:ENST00000603310.5:ENST00000673894.1:ENST00000442293.5:ENST00000441075.1	lncRNA	lncRNA	lncRNA	lncRNA	4	73	2	1.73318	2.692525	3.65187	0.0462868	5.49434e-4	0.150684	0.0213049
chr7	152303068	152303168	3679953	0	-	0.36	(0.35,0.378]	chr7	341623	163	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000684262.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	91	2	2.66568	2.6925049999999997	2.71933	0.00496487	9.31518e-4	0.0615009	0.0278746
chr3	17735043	17735143	1630358	0	-	0.37	(0.35,0.378]	chr3	168275	328	INTRON	INTRON	TBC1D5	ENSG00000131374.15	ENST00000253692.11:ENST00000696125.1:ENST00000414318.2:ENST00000429383.8:ENST00000415814.6:ENST00000452492.6:ENST00000412981.5:ENST00000428355.5:ENST00000425944.5:ENST00000430169.5:ENST00000445294.5:ENST00000414349.5:ENST00000443499.6:ENST00000444756.5:ENST00000497531.5:ENST00000443386.5:ENST00000446863.5:ENST00000444471.5:ENST00000481396.5:ENST00000423331.6:ENST00000485432.1:ENST00000471679.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	68	2	1.97646	2.692485	3.40851	0.0193942	0.00205747	0.119831	0.0409869
chr20	38947475	38947575	7272635	0	+	0.3	(0.28,0.32]	chr20	739061	2	SS3_PROX	SS3_PROX:INTRON	FAM83D	ENSG00000101447.15	ENST00000619304.4:ENST00000619850.2	protein_coding	protein_coding	protein_coding	protein_coding	2	51	2	2.38101	2.6924799999999998	3.00395	0.0456017	0.0101329	0.164236	0.0850389
chr17	78218567	78218666	6682215	0	+	0.454545	(0.44,0.476]	chr17	652756	14	INTRON	INTRON	BIRC5	ENSG00000089685.15	ENST00000301633.8:ENST00000350051.8:ENST00000590925.6:ENST00000374948.6:ENST00000592734.5:ENST00000592115.5:ENST00000586192.5:ENST00000587746.5:ENST00000591800.1:ENST00000589892.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	62	2	2.03266	2.692465	3.35227	0.0155853	0.0022005699999999998	0.109411	0.0417893
chr1	16605901	16606001	383466	0	-	0.41	(0.408,0.44]	chr1	45139	6	EXON_LNCRNA	EXON_LNCRNA:INTRON	NBPF1	ENSG00000219481.11	ENST00000430580.6:ENST00000420513.1:ENST00000599069.5:ENST00000449853.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	39	2	2.66579	2.69245	2.71911	0.019342	0.0189489	0.119831	0.108861
chr1	40374708	40374808	81453	0	+	0.42	(0.408,0.44]	chr1	10551	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	SMAP2	ENSG00000084070.12	ENST00000435168.6:ENST00000372718.8:ENST00000372708.5	protein_coding	protein_coding	protein_coding	protein_coding	2	39	2	2.66579	2.69245	2.71911	0.019342	0.0189489	0.119831	0.108861
chr12	120856531	120856631	5435429	0	-	0.42	(0.408,0.44]	chr12	519663	210	INTRON	INTRON	SPPL3	ENSG00000157837.16	ENST00000353487.7:ENST00000536996.5:ENST00000543608.5:ENST00000543854.5	protein_coding	protein_coding	protein_coding	protein_coding	2	39	2	2.66579	2.69245	2.71911	0.019342	0.0189489	0.119831	0.108861
chr21	43898470	43898570	7414123	0	+	0.42	(0.408,0.44]	chr21	755692	155	INTRON	INTRON	AGPAT3	ENSG00000160216.21	ENST00000291572.13:ENST00000448287.5:ENST00000398061.5	protein_coding	protein_coding	protein_coding	protein_coding	2	39	2	2.66579	2.69245	2.71911	0.019342	0.0189489	0.119831	0.108861
chr7	116955063	116955153	3385998	0	+	0.433333	(0.408,0.44]	chr7	317110	2	EXON_LNCRNA	EXON_LNCRNA:INTRON	ST7:ST7-OT4	ENSG00000004866.22:ENSG00000214188.9	ENST00000393446.6:ENST00000265437.9:ENST00000393451.7:ENST00000438863.5:ENST00000393449.5:ENST00000443979.5:ENST00000323984.8:ENST00000417919.5:ENST00000446490.5:ENST00000397750.7:ENST00000466018.5:ENST00000471110.5:ENST00000470996.4:ENST00000397751.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:nonsense_mediated_decay:lncRNA	2	39	2	2.66579	2.69245	2.71911	0.019342	0.0189489	0.119831	0.108861
chr16	89520643	89520740	6420465	0	+	0.536082	(0.515,0.57]	chr16	616215	5	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	SPG7	ENSG00000197912.16	ENST00000647079.1:ENST00000646303.1:ENST00000643649.1:ENST00000643307.1:ENST00000566371.6:ENST00000644498.1:ENST00000645897.1:ENST00000643668.1:ENST00000644225.1:ENST00000645818.2:ENST00000645977.1:ENST00000645063.1:ENST00000646263.1:ENST00000643724.1:ENST00000644781.1:ENST00000644901.1:ENST00000645042.1:ENST00000646531.1:ENST00000646930.1:ENST00000642436.1:ENST00000644210.1:ENST00000564047.2:ENST00000646589.1:ENST00000268704.7:ENST00000646826.1:ENST00000646716.1:ENST00000643345.1:ENST00000341316.6:ENST00000645533.1:ENST00000646958.1:ENST00000642371.1:ENST00000643105.1:ENST00000645354.1:ENST00000643957.1:ENST00000642334.1:ENST00000647227.1:ENST00000562775.2:ENST00000568151.1:ENST00000646445.1:ENST00000564409.2:ENST00000643954.1:ENST00000646399.1:ENST00000644671.1:ENST00000643178.1:ENST00000611189.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	12	164	2	2.32846	2.6924400000000004	3.05642	4.15381e-4	2.03434e-5	0.0182269	0.00366606
chr12	69272875	69272974	5163851	0	+	0.343434	(0.32,0.35]	chr12	489054	35	UTR3	UTR3:EXON_MRNA	CPSF6	ENSG00000111605.18	ENST00000435070.7:ENST00000650046.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	228	2	2.67592	2.69233	2.70874	2.82827e-4	1.16796e-4	0.015495	0.00929802
chr9	122916055	122916153	4338696	0	-	0.387755	(0.378,0.408]	chr9	398806	6	UTR3	UTR3:EXON_MRNA	ZBTB26	ENSG00000171448.9	ENST00000373656.4	protein_coding	protein_coding	protein_coding	protein_coding	4	65	2	1.82258	2.69233	3.56208	0.0341279	6.94246e-4	0.135102	0.0240761
chr1	32858581	32858679	66989	0	+	0.397959	(0.378,0.408]	chr1	8593	27	UTR3	UTR3:EXON_MRNA	S100PBP	ENSG00000116497.18	ENST00000373475.10	protein_coding	protein_coding	protein_coding	protein_coding	4	65	2	1.86598	2.69229	3.5186	0.0300232	8.45009e-4	0.129138	0.0263813
chr1	220135609	220135708	319209	0	+	0.474747	(0.44,0.476]	chr1	36556	7	INTRON	INTRON	IARS2	ENSG00000067704.10	ENST00000366922.3	protein_coding	protein_coding	protein_coding	protein_coding	2	39	2	2.29842	2.692165	3.08591	0.0552483	0.00481262	0.165463	0.0638089
chr7	127713102	127713201	3403018	0	+	0.444444	(0.44,0.476]	chr7	318124	51	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8	protein_coding	protein_coding	protein_coding	protein_coding	2	39	2	2.29842	2.692165	3.08591	0.0552483	0.00481262	0.165463	0.0638089
chr8	53983562	53983662	3952906	0	-	0.53	(0.515,0.57]	chr8	362520	40	INTRON	INTRON	TCEA1	ENSG00000187735.15	ENST00000396401.7:ENST00000521604.7:ENST00000521086.6:ENST00000522635.5:ENST00000522397.5:ENST00000640382.1:ENST00000640041.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	35	2	2.12971	2.691915	3.25412	0.0757903	0.00224554	0.194427	0.0435144
chr10	125118070	125118169	4713913	0	-	0.393939	(0.378,0.408]	chr10	434913	66	INTRON	INTRON	CTBP2	ENSG00000175029.17	ENST00000337195.9:ENST00000411419.6:ENST00000494626.6:ENST00000531469.5:ENST00000460976.5:ENST00000476817.1:ENST00000530884.1:ENST00000530930.1:ENST00000467395.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	54	2	2.00398	2.69184	3.3797	0.0393906	0.00154501	0.143072	0.0362716
chr22	49645931	49646031	7602547	0	-	0.52	(0.515,0.57]	chr22	778594	185	INTRON	INTRON	MIR3667HG	ENSG00000188511.13	ENST00000414287.5:ENST00000416411.1:ENST00000689875.1:ENST00000400023.5:ENST00000405854.5	lncRNA	lncRNA	lncRNA	lncRNA	9	118	2	2.30857	2.691725	3.07488	7.37051e-4	1.38584e-4	0.0247924	0.0107072
chr3	37249500	37249600	1395814	0	+	0.46	(0.44,0.476]	chr3	146308	4	SS3_PROX	SS3_PROX:INTRON	GOLGA4	ENSG00000144674.17	ENST00000435830.6:ENST00000444882.5:ENST00000356847.8:ENST00000450863.6:ENST00000361924.7:ENST00000429018.5:ENST00000431105.1:ENST00000419177.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	73	2	2.35576	2.6916349999999998	3.02751	0.00715968	0.00208591	0.0723634	0.0424672
chr17	4311015	4311115	6711805	0	-	0.46	(0.44,0.476]	chr17	657718	35	INTRON	INTRON	UBE2G1	ENSG00000132388.13	ENST00000396981.7:ENST00000572484.5:ENST00000574633.5:ENST00000571980.1:ENST00000571953.5:ENST00000574059.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	39	2	2.58033	2.69154	2.80275	0.0247511	0.0146513	0.131869	0.0982604
chr3	60271327	60271427	1712327	0	-	0.47	(0.44,0.476]	chr3	176138	1906	INTRON	INTRON	FHIT	ENSG00000189283.10	ENST00000492590.6:ENST00000476844.5:ENST00000468189.5:ENST00000488467.5	protein_coding	protein_coding	protein_coding	protein_coding	2	39	2	2.58033	2.69154	2.80275	0.0247511	0.0146513	0.131869	0.0982604
chr7	152374065	152374165	3680674	0	-	0.48	(0.476,0.515]	chr7	341660	150	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000682301.1:ENST00000452749.2:ENST00000680867.1:ENST00000683800.1:ENST00000684278.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	83	2	2.41328	2.69154	2.9698	0.00355364	0.00124841	0.0547657	0.0323336
chr3	9477662	9477761	1359745	0	+	0.353535	(0.35,0.378]	chr3	142827	17	UTR3	UTR3:EXON_MRNA:INTRON	SETD5	ENSG00000168137.20	ENST00000402198.7:ENST00000406341.5:ENST00000407969.5:ENST00000399686.6	protein_coding	protein_coding	protein_coding	protein_coding	52	844	2	2.46228	2.691525	2.92077	6.98068e-6	3.60318e-6	0.00187943	0.0013551
chr7	148820573	148820672	3670115	0	-	0.40404	(0.378,0.408]	chr7	340579	10	EXON_MRNA	EXON_MRNA:INTRON	EZH2	ENSG00000106462.12	ENST00000683292.1:ENST00000320356.7:ENST00000492143.5:ENST00000478654.5:ENST00000350995.6:ENST00000460911.5:ENST00000683744.1:ENST00000684510.1:ENST00000682317.1:ENST00000682263.1:ENST00000684300.1:ENST00000476773.5:ENST00000483967.5:ENST00000498186.5:ENST00000483012.1:ENST00000682401.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	65	2	2.42827	2.69143	2.95459	0.00957623	0.00336942	0.0820838	0.0532965
chr16	72085943	72086042	6514909	0	-	0.464646	(0.44,0.476]	chr16	631231	12	UTR3	UTR3:EXON_MRNA:INTRON	TXNL4B	ENSG00000140830.9	ENST00000562153.5:ENST00000268483.8:ENST00000423037.5	protein_coding	protein_coding	protein_coding	protein_coding	4	63	2	1.87325	2.691395	3.50954	0.0265709	0.00116647	0.134088	0.0312127
chr1	246929632	246929731	681940	0	-	0.383838	(0.378,0.408]	chr1	80043	109	INTRON	INTRON	AHCTF1	ENSG00000153207.16	ENST00000648844.2:ENST00000326225.3:ENST00000366508.5	protein_coding	protein_coding	protein_coding	protein_coding	7	89	2	1.70666	2.691375	3.67609	0.0140577	6.32264e-4	0.102916	0.0231174
chr1	77966008	77966100	494392	0	-	0.369565	(0.35,0.378]	chr1	58535	4	INTRON	INTRON	FUBP1	ENSG00000162613.17	ENST00000370768.7:ENST00000294623.8:ENST00000370767.5:ENST00000421641.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	125	2	2.6264	2.6913549999999997	2.75631	0.00113582	5.94723e-4	0.0307499	0.0221865
chr20	50094515	50094615	7353767	0	-	0.29	(0.28,0.32]	chr20	749863	99	INTRON	INTRON	UBE2V1	ENSG00000244687.13	ENST00000340309.7:ENST00000371677.7:ENST00000415862.6:ENST00000557021.5:ENST00000617119.4:ENST00000625172.3:ENST00000396059.7:ENST00000371674.8:ENST00000371657.9:ENST00000483534.5:ENST00000492371.6:ENST00000486653.5:ENST00000490555.1:ENST00000493090.5:ENST00000467839.5:ENST00000472923.5:ENST00000432266.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	100	2	1.9822	2.691305	3.40041	0.00761984	0.00273088	0.0776647	0.0467642
chr1	204550972	204551071	297778	0	+	0.353535	(0.35,0.378]	chr1	34331	14	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	MDM4	ENSG00000198625.14	ENST00000367183.7:ENST00000391947.6:ENST00000454264.6:ENST00000612738.4:ENST00000614459.4:ENST00000616250.4:ENST00000367182.8:ENST00000463049.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	14	244	2	2.49219	2.6913	2.89041	1.5057e-4	7.1604e-5	0.0106137	0.00761173
chr4	39750683	39750782	1953519	0	+	0.282828	(0.28,0.32]	chr4	195642	45	INTRON	INTRON	UBE2K	ENSG00000078140.14	ENST00000510934.5:ENST00000261427.10:ENST00000438068.6:ENST00000513231.5:ENST00000503368.5:ENST00000445950.2:ENST00000510719.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	65	2	2.33771	2.69128	3.04485	0.0142701	0.00894006	0.103838	0.0799922
chr4	102819254	102819354	2213277	0	-	0.52	(0.515,0.57]	chr4	216759	64	INTRON	INTRON	UBE2D3	ENSG00000109332.20	ENST00000453744.7:ENST00000394804.6:ENST00000394803.9:ENST00000394801.8:ENST00000343106.9:ENST00000503742.5:ENST00000321805.11:ENST00000350435.11:ENST00000338145.7:ENST00000349311.12:ENST00000504211.5:ENST00000357194.10:ENST00000505207.5:ENST00000507845.5:ENST00000502404.5:ENST00000508635.5:ENST00000505307.5:ENST00000510129.5:ENST00000508476.5:ENST00000502563.5:ENST00000508238.5:ENST00000514755.5:ENST00000508974.5:ENST00000502690.5:ENST00000508818.5:ENST00000503418.5:ENST00000508249.1:ENST00000513098.5:ENST00000503282.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	18	247	2	2.05435	2.691185	3.32802	0.0010029	1.84939e-7	0.0289244	2.00846e-4
chr1	45657836	45657935	440297	0	-	0.353535	(0.35,0.378]	chr1	53348	18	INTRON	INTRON	GPBP1L1	ENSG00000159592.11	ENST00000290795.7:ENST00000355105.8	protein_coding	protein_coding	protein_coding	protein_coding	8	129	2	2.46877	2.69097	2.91317	0.00189062	3.99709e-4	0.0392053	0.0179547
chr19	21320687	21320786	7158553	0	-	0.222222	[0,0.28]	chr19	723671	97	INTRON	INTRON	ZNF708	ENSG00000182141.10	ENST00000356929.3:ENST00000598046.5:ENST00000601295.1:ENST00000602023.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	55	2	2.33055	2.6908450000000004	3.05114	0.062338	0.0075493	0.175343	0.0773151
chr21	10453633	10453733	7368533	0	+	0.23	[0,0.28]	chr21	751980	1	SS3_PROX	SS3_PROX:INTRON	BAGE2	ENSG00000187172.15	ENST00000470054.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	2	55	2	2.33055	2.6908450000000004	3.05114	0.062338	0.0075493	0.175343	0.0773151
chr3	72421008	72421108	1745665	0	-	0.25	[0,0.28]	chr3	177368	405	INTRON	INTRON	RYBP	ENSG00000163602.12	ENST00000477973.5	protein_coding	protein_coding	protein_coding	protein_coding	2	55	2	2.33055	2.6908450000000004	3.05114	0.062338	0.0075493	0.175343	0.0773151
chr7	75509742	75509840	3558957	0	-	0.408163	(0.378,0.408]	chr7	331568	15	INTRON	INTRON	PMS2P3	ENSG00000127957.19	ENST00000693762.1:ENST00000394921.8:ENST00000430602.5:ENST00000418756.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	4	73	2	2.26009	2.690795	3.1215	0.0188651	4.84777e-4	0.108861	0.0199443
chr8	100939824	100939924	4005847	0	-	0.52	(0.515,0.57]	chr8	366668	49	INTRON	INTRON	YWHAZ	ENSG00000164924.18	ENST00000395958.6:ENST00000395957.6:ENST00000457309.2:ENST00000395956.7:ENST00000353245.7:ENST00000521309.5:ENST00000522542.5:ENST00000395953.6:ENST00000395948.6:ENST00000395951.7:ENST00000419477.6:ENST00000521607.5:ENST00000480304.5:ENST00000518736.5:ENST00000517727.5:ENST00000521328.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	54	2	2.06758	2.6907300000000003	3.31388	0.0140038	0.00174704	0.0959618	0.0386026
chrX	73971472	73971572	7682373	0	+	0.54	(0.515,0.57]	chrX	786638	31	INTRON	INTRON	JPX	ENSG00000225470.8	ENST00000664637.1:ENST00000639185.1:ENST00000655090.1:ENST00000640437.1:ENST00000660546.1:ENST00000667886.1:ENST00000660840.1:ENST00000657179.1:ENST00000670506.1:ENST00000657910.1:ENST00000662120.1:ENST00000671207.1:ENST00000659254.1:ENST00000656624.1:ENST00000667573.1:ENST00000660856.1:ENST00000660836.1:ENST00000668590.1:ENST00000658649.1:ENST00000414209.6:ENST00000654137.1:ENST00000670994.1:ENST00000602772.5:ENST00000655879.1:ENST00000657372.1:ENST00000657096.1:ENST00000602985.6:ENST00000670685.1:ENST00000670503.1:ENST00000663027.1:ENST00000654995.1:ENST00000602895.6:ENST00000654374.1:ENST00000660087.1:ENST00000665032.1:ENST00000671336.1:ENST00000671476.1:ENST00000667057.1:ENST00000670192.1:ENST00000670464.1:ENST00000665345.1:ENST00000661546.1:ENST00000662543.1:ENST00000602938.6:ENST00000664295.1:ENST00000654005.1:ENST00000669149.1:ENST00000659852.1:ENST00000656509.1:ENST00000602294.6:ENST00000667294.1:ENST00000663470.1:ENST00000602920.6:ENST00000671021.1:ENST00000659849.1:ENST00000667937.1:ENST00000661130.1:ENST00000654196.1:ENST00000655994.1:ENST00000659373.1:ENST00000662239.1:ENST00000670805.1:ENST00000656263.1:ENST00000653069.1:ENST00000657638.1:ENST00000653808.1:ENST00000653929.1:ENST00000653885.1:ENST00000659023.1:ENST00000602546.5:ENST00000659622.1:ENST00000671518.1:ENST00000670408.1	lncRNA	lncRNA	lncRNA	lncRNA	4	54	2	2.06758	2.6907300000000003	3.31388	0.0140038	0.00174704	0.0959618	0.0386026
chr1	227296505	227296605	651501	0	-	0.49	(0.476,0.515]	chr1	77110	314	INTRON	INTRON	CDC42BPA	ENSG00000143776.20	ENST00000366766.8:ENST00000366769.7:ENST00000334218.9:ENST00000366767.7:ENST00000366764.8:ENST00000478573.6:ENST00000682551.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	83	2	2.4132	2.69072	2.96824	0.00417094	9.98194e-4	0.0570595	0.0290732
chr16	88749979	88750078	6539869	0	-	0.525253	(0.515,0.57]	chr16	633998	1	INTRON	INTRON	PIEZO1	ENSG00000103335.22	ENST00000301015.14	protein_coding	protein_coding	protein_coding	protein_coding	5	72	2	2.31902	2.6907050000000003	3.06239	0.00493032	6.62949e-4	0.0646039	0.0234815
chr1	204405510	204405606	621977	0	-	0.302083	(0.28,0.32]	chr1	73936	23	UTR3	UTR3:EXON_MRNA:INTRON	PPP1R15B	ENSG00000158615.10	ENST00000693720.1:ENST00000367188.5:ENST00000689921.1:ENST00000690849.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	109	2	1.59601	2.69068	3.78535	0.0236042	6.21154e-4	0.12907	0.0229151
chr20	49282416	49282515	7284645	0	+	0.434343	(0.408,0.44]	chr20	741065	2	INTRON	INTRON	ZFAS1	ENSG00000177410.13	ENST00000371743.8:ENST00000417721.5:ENST00000441722.5:ENST00000450535.5:ENST00000458653.5:ENST00000428008.6:ENST00000620594.2:ENST00000652916.1:ENST00000326677.9:ENST00000659056.1	lncRNA	lncRNA	lncRNA	lncRNA	7	111	2	1.82275	2.6906350000000003	3.55852	0.0123226	7.50862e-5	0.097243	0.00777227
chr15	23573563	23573662	5976996	0	+	0.454545	(0.44,0.476]	chr15	568470	57	INTRON	INTRON	MKRN3	ENSG00000179455.10	ENST00000679144.1:ENST00000564592.2:ENST00000677119.1:ENST00000570112.1:ENST00000647595.1:ENST00000568252.1:ENST00000649065.1:ENST00000676568.1:ENST00000568945.2:ENST00000677372.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	84	2	2.34775	2.690625	3.0335	0.00466011	9.65686e-4	0.0629753	0.0282401
chr17	82911257	82911357	6695838	0	+	0.67	(0.57,1]	chr17	655021	1	SS3_PROX	SS3_PROX:INTRON	TBCD	ENSG00000141556.22	ENST00000682479.1:ENST00000682722.1:ENST00000684464.1:ENST00000684544.1:ENST00000681983.1:ENST00000684361.1:ENST00000683184.1:ENST00000683282.1:ENST00000684408.1:ENST00000355528.9:ENST00000683444.1:ENST00000684776.1:ENST00000683041.1:ENST00000684760.1:ENST00000684349.1:ENST00000682213.1:ENST00000539345.6:ENST00000684000.1:ENST00000684188.1:ENST00000684429.1:ENST00000682610.1:ENST00000683821.1:ENST00000682654.1:ENST00000576160.6:ENST00000571712.5:ENST00000576996.5:ENST00000574801.5:ENST00000683584.1:ENST00000682099.1:ENST00000684559.1:ENST00000571316.5:ENST00000576760.5:ENST00000572984.5:ENST00000683839.1:ENST00000574975.5:ENST00000572953.5:ENST00000571796.5:ENST00000682315.1:ENST00000574422.1:ENST00000576677.6:ENST00000571618.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	28	2	2.38391	2.6906	2.99729	0.0104374	0.00538023	0.0902296	0.0642754
chr22	41944375	41944462	7592221	0	-	0.517241	(0.515,0.57]	chr22	777603	3	INTRON	INTRON	CENPM	ENSG00000100162.15	ENST00000215980.10:ENST00000402338.5:ENST00000404067.5:ENST00000407253.7:ENST00000402420.1	protein_coding	protein_coding	protein_coding	protein_coding	5	67	2	2.32281	2.6906	3.05839	0.00485936	0.00252428	0.0640618	0.0446656
chr3	160410825	160410924	1544710	0	+	0.222222	[0,0.28]	chr3	160690	58	INTRON	INTRON	SMC4	ENSG00000113810.16	ENST00000472282.5:ENST00000472991.5:ENST00000357388.8:ENST00000469762.5:ENST00000468653.5:ENST00000467468.5:ENST00000469858.5:ENST00000489573.5:ENST00000462787.5:ENST00000344722.5:ENST00000470240.5:ENST00000497984.5:ENST00000487747.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	123	2	2.51584	2.6906	2.86536	0.0115397	7.2634e-4	0.0889104	0.0245647
chr6	7214302	7214402	2799438	0	+	0.59	(0.57,1]	chr6	263771	27	EXON_MRNA	EXON_MRNA:INTRON	RREB1	ENSG00000124782.21	ENST00000379933.7:ENST00000379938.7:ENST00000349384.10:ENST00000334984.10:ENST00000475946.5:ENST00000483150.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	28	2	2.38391	2.6906	2.99729	0.0104374	0.00538023	0.0902296	0.0642754
chr1	40384176	40384276	81548	0	+	0.46	(0.44,0.476]	chr1	10553	91	INTRON	INTRON	SMAP2	ENSG00000084070.12	ENST00000435168.6:ENST00000372718.8:ENST00000372708.5	protein_coding	protein_coding	protein_coding	protein_coding	10	158	2	2.54178	2.690595	2.83941	2.54236e-4	2.3189e-4	0.0147895	0.0134553
chr3	33803822	33803922	1394431	0	+	0.29	(0.28,0.32]	chr3	146021	39	INTRON	INTRON	PDCD6IP	ENSG00000170248.15	ENST00000457054.6:ENST00000648706.1:ENST00000435909.5:ENST00000430877.5:ENST00000413073.1:ENST00000307296.8:ENST00000477798.5:ENST00000498147.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	10	215	2	2.10412	2.6905799999999997	3.27704	0.00647448	9.00444e-6	0.0699952	0.00216015
chr10	92612052	92612149	4490873	0	+	0.237113	[0,0.28]	chr10	413564	22	INTRON	INTRON	KIF11	ENSG00000138160.7	ENST00000676757.1:ENST00000676647.1:ENST00000260731.5:ENST00000676621.1:ENST00000677720.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	55	2	2.68918	2.690525	2.69187	0.0275571	0.0221271	0.123904	0.123903
chr17	41691800	41691896	6610724	0	+	0.510417	(0.476,0.515]	chr17	643905	10	UTR3	UTR3:EXON_MRNA	EIF1	ENSG00000173812.11	ENST00000469257.2	protein_coding	protein_coding	protein_coding	protein_coding	7	132	2	2.43242	2.690505	2.94859	0.0091895	6.2312e-5	0.0855292	0.00698976
chr9	135935282	135935380	4372295	0	-	0.377551	(0.35,0.378]	chr9	402502	14	INTRON	INTRON	UBAC1	ENSG00000130560.9	ENST00000371756.4:ENST00000489050.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	92	2	2.35838	2.6905	3.02262	0.00468156	0.00119456	0.0631419	0.0315806
chr19	38703172	38703269	7066286	0	+	0.350515	(0.35,0.378]	chr19	705496	17	INTRON	INTRON	ACTN4	ENSG00000130402.13	ENST00000252699.7:ENST00000588618.5:ENST00000440400.2:ENST00000424234.7:ENST00000589528.1:ENST00000390009.7:ENST00000495553.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	56	2	2.34278	2.69046	3.03814	0.0129593	0.00767003	0.0991015	0.075364
chr2	135126856	135126956	873426	0	+	0.37	(0.35,0.378]	chr2	97790	2	SS5_PROX	SS5_PROX:INTRON	RAB3GAP1	ENSG00000115839.19	ENST00000539493.3:ENST00000688088.1:ENST00000693554.1:ENST00000690785.1:ENST00000689880.1:ENST00000264158.13:ENST00000690208.1:ENST00000691478.1:ENST00000686114.1:ENST00000685967.1:ENST00000442034.5:ENST00000687199.1:ENST00000691339.1:ENST00000688182.1:ENST00000487003.5:ENST00000489858.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	56	2	2.34278	2.69046	3.03814	0.0129593	0.00767003	0.0991015	0.075364
chr5	149505143	149505242	2750604	0	-	0.282828	(0.28,0.32]	chr5	259007	4	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	CSNK1A1	ENSG00000113712.19	ENST00000261798.10:ENST00000377843.8:ENST00000657001.1:ENST00000515768.6:ENST00000606719.6:ENST00000657462.1:ENST00000661952.1:ENST00000504676.5:ENST00000515435.5:ENST00000662268.1:ENST00000657706.1:ENST00000606826.5:ENST00000503350.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	91	2	1.51187	2.690455	3.86904	0.0598267	2.33993e-4	0.169278	0.0135358
chr10	11890820	11890919	4556492	0	-	0.373737	(0.35,0.378]	chr10	420504	25	INTRON	INTRON	PROSER2-AS1	ENSG00000225778.5	ENST00000445498.5	lncRNA	lncRNA	lncRNA	lncRNA	6	88	2	1.71907	2.69029	3.66151	0.0218101	4.717e-4	0.11491	0.0196294
chr2	31967996	31968096	1090691	0	-	0.4	(0.378,0.408]	chr2	116913	48	INTRON	INTRON	MEMO1:DPY30	ENSG00000162959.14:ENSG00000162961.14	ENST00000295065.9:ENST00000446765.5:ENST00000404530.6:ENST00000490459.5:ENST00000426310.6:ENST00000413686.1:ENST00000407893.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	40	2	2.38873	2.690215	2.9917	0.0458857	0.0068789	0.149888	0.0749442
chr7	75187647	75187721	3557283	0	-	0.391892	(0.378,0.408]	chr7	331274	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GTF2IP1	ENSG00000277053.4	ENST00000618412.4:ENST00000622829.4:ENST00000621948.4:ENST00000616377.4:ENST00000614592.4	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript:transcribed_unprocessed_pseudogene	2	40	2	2.38873	2.690215	2.9917	0.0458857	0.0068789	0.149888	0.0749442
chrX	23784669	23784752	7630710	0	+	0.39759	(0.378,0.408]	chrX	781421	3	SS5_PROX	SS5_PROX:INTRON	SAT1	ENSG00000130066.17	ENST00000379270.5:ENST00000379254.5:ENST00000489394.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	115	2	1.55461	2.6901800000000002	3.82575	0.0113578	3.23711e-4	0.0951425	0.0165891
chr20	38949769	38949866	7272659	0	+	0.43299	(0.408,0.44]	chr20	739066	14	INTRON	INTRON	FAM83D	ENSG00000101447.15	ENST00000619304.4:ENST00000619850.2	protein_coding	protein_coding	protein_coding	protein_coding	12	197	2	2.64527	2.69018	2.73509	1.37882e-4	1.36315e-4	0.010707	0.010058
chr16	2754244	2754343	6279832	0	+	0.434343	(0.408,0.44]	chr16	600760	2	INTRON	INTRON	SRRM2	ENSG00000167978.17	ENST00000576924.5:ENST00000301740.13:ENST00000575009.5:ENST00000576894.5:ENST00000575701.4:ENST00000630499.2:ENST00000576415.5:ENST00000571378.5:ENST00000574340.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	24	381	2	2.55218	2.69012	2.82806	2.05856e-5	1.28924e-5	0.00352433	0.00285065
chr5	66147477	66147577	2372519	0	+	0.45	(0.44,0.476]	chr5	228649	19	INTRON	INTRON	SREK1	ENSG00000153914.16	ENST00000521691.5:ENST00000612404.4:ENST00000523851.1:ENST00000334121.11:ENST00000520058.1:ENST00000520953.5:ENST00000522912.5:ENST00000524111.5:ENST00000380918.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	88	2	2.08211	2.6899800000000003	3.29785	0.0130715	2.77287e-4	0.0996047	0.0152764
chr21	6655820	6655920	7425730	0	-	0.29	(0.28,0.32]	chr21	757494	176	INTRON	INTRON	ENSG00000280145	ENSG00000280145.3	ENST00000625185.3:ENST00000623106.3:ENST00000624846.3:ENST00000623313.1:ENST00000624965.1	lncRNA	lncRNA	lncRNA	lncRNA	5	108	2	2.32052	2.689965	3.05941	0.00612675	0.00136004	0.0708525	0.0336321
chr8	11809317	11809404	3702591	0	+	0.344828	(0.32,0.35]	chr8	343496	3	UTR5	UTR5:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	FDFT1	ENSG00000079459.13	ENST00000538689.4:ENST00000615631.4:ENST00000618539.4:ENST00000530337.5:ENST00000623368.3:ENST00000446331.6:ENST00000443614.6:ENST00000220584.9:ENST00000525607.5:ENST00000525283.5:ENST00000529464.5:ENST00000525900.5:ENST00000528812.5:ENST00000622850.2:ENST00000530664.5:ENST00000525954.5:ENST00000531733.1:ENST00000531249.2:ENST00000532266.5:ENST00000528643.5:ENST00000525777.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	120	2	2.38582	2.68996	2.9941	0.0138529	8.99126e-5	0.0953077	0.00794969
chr6	157915876	157915975	3016702	0	+	0.313131	(0.28,0.32]	chr6	281411	55	INTRON	INTRON	SNX9	ENSG00000130340.17	ENST00000680863.1:ENST00000679814.1:ENST00000680464.1:ENST00000681186.1:ENST00000679732.1:ENST00000681183.1:ENST00000681534.1:ENST00000681651.1:ENST00000680089.1:ENST00000680078.1:ENST00000680974.1:ENST00000680095.1:ENST00000681138.1:ENST00000392185.8:ENST00000679790.1:ENST00000680495.1:ENST00000679691.1:ENST00000681881.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	78	2	2.18212	2.68993	3.19774	0.010265700000000001	0.00548491	0.089002	0.0648867
chr19	4378663	4378763	7119908	0	-	0.4	(0.378,0.408]	chr19	716279	113	INTRON	INTRON	SH3GL1	ENSG00000141985.9	ENST00000269886.7:ENST00000598564.5:ENST00000417295.6:ENST00000593591.5:ENST00000598230.5:ENST00000598219.1	protein_coding	protein_coding	protein_coding	protein_coding	2	40	2	2.66785	2.6898400000000002	2.71183	0.0224639	0.0170789	0.11692	0.110899
chr21	46274585	46274685	7471314	0	-	0.38	(0.378,0.408]	chr21	761677	6	INTRON	INTRON	MCM3AP	ENSG00000160294.11	ENST00000397708.1:ENST00000291688.6	protein_coding	protein_coding	protein_coding	protein_coding	2	40	2	2.66785	2.6898400000000002	2.71183	0.0224639	0.0170789	0.11692	0.110899
chr3	47335497	47335587	1419444	0	+	0.4	(0.378,0.408]	chr3	149055	3	INTRON	INTRON	KLHL18	ENSG00000114648.12	ENST00000232766.6:ENST00000461084.5:ENST00000442272.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	40	2	2.66785	2.6898400000000002	2.71183	0.0224639	0.0170789	0.11692	0.110899
chr3	52545544	52545641	1699331	0	-	0.381443	(0.378,0.408]	chr3	174871	3	UTR3	UTR3:EXON_MRNA	PBRM1	ENSG00000163939.18	ENST00000356770.8	protein_coding	protein_coding	protein_coding	protein_coding	2	40	2	2.66785	2.6898400000000002	2.71183	0.0224639	0.0170789	0.11692	0.110899
chr5	112743832	112743931	2451946	0	+	0.383838	(0.378,0.408]	chr5	234911	50	INTRON	INTRON	APC	ENSG00000134982.17	ENST00000509732.5:ENST00000505350.1:ENST00000507379.5:ENST00000257430.9:ENST00000508624.5:ENST00000508376.6:ENST00000512211.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	40	2	2.66785	2.6898400000000002	2.71183	0.0224639	0.0170789	0.11692	0.110899
chr7	44657559	44657659	3314801	0	+	0.38	(0.378,0.408]	chr7	307918	8	INTRON	INTRON	OGDH	ENSG00000105953.16	ENST00000439616.6:ENST00000443864.6:ENST00000449767.5:ENST00000447398.5:ENST00000419661.5:ENST00000222673.6:ENST00000444676.5	protein_coding	protein_coding	protein_coding	protein_coding	2	40	2	2.66785	2.6898400000000002	2.71183	0.0224639	0.0170789	0.11692	0.110899
chr8	129524174	129524274	4060524	0	-	0.39	(0.378,0.408]	chr8	369648	136	INTRON	INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1:ENST00000676273.1:ENST00000667643.1:ENST00000668791.1:ENST00000663716.1:ENST00000663572.1:ENST00000676148.1:ENST00000667962.1:ENST00000674877.1:ENST00000675316.1:ENST00000674656.1:ENST00000446592.7:ENST00000667341.1:ENST00000675186.1:ENST00000652971.1:ENST00000661447.1:ENST00000674863.1:ENST00000675498.1:ENST00000675527.1:ENST00000676108.1:ENST00000657647.1:ENST00000675589.1:ENST00000675913.1:ENST00000675109.1:ENST00000671632.1:ENST00000671311.1:ENST00000676099.1:ENST00000660652.1:ENST00000675522.1:ENST00000675183.1:ENST00000658861.1:ENST00000663991.1:ENST00000675044.1:ENST00000675435.1:ENST00000674639.1:ENST00000676069.1:ENST00000675532.1:ENST00000674762.1:ENST00000523151.6:ENST00000675948.1:ENST00000665364.1:ENST00000657251.1:ENST00000675166.1:ENST00000674883.1:ENST00000675867.1:ENST00000674580.1:ENST00000675393.1:ENST00000520048.1:ENST00000674906.1:ENST00000676030.1:ENST00000670588.1:ENST00000675072.1:ENST00000664936.1:ENST00000652914.1:ENST00000657069.1	lncRNA	lncRNA	lncRNA	lncRNA	2	40	2	2.66785	2.6898400000000002	2.71183	0.0224639	0.0170789	0.11692	0.110899
chr14	101822450	101822547	5819110	0	+	0.257732	[0,0.28]	chr14	551847	15	INTRON	INTRON	PPP2R5C	ENSG00000078304.20	ENST00000694906.1:ENST00000422945.6:ENST00000554442.5:ENST00000328724.9:ENST00000554504.1:ENST00000553890.1:ENST00000350249.7:ENST00000557621.5:ENST00000556946.1:ENST00000556307.5:ENST00000553730.5:ENST00000557714.1:ENST00000334743.9:ENST00000445439.7:ENST00000557095.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	74	2	2.33097	2.68982	3.04867	0.0158969	0.0104221	0.109464	0.085482
chr18	688122	688212	6939521	0	-	0.444444	(0.44,0.476]	chr18	686404	6	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	ENOSF1	ENSG00000132199.20	ENST00000647584.2:ENST00000383578.7:ENST00000584259.6:ENST00000340116.12:ENST00000581475.5:ENST00000580982.5:ENST00000585128.6:ENST00000584453.5:ENST00000578651.5:ENST00000577334.5:ENST00000585004.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	201	2	2.40554	2.689815	2.97409	5.0428e-4	3.04361e-5	0.0202328	0.00457249
chr7	91946334	91946434	3351068	0	+	0.37	(0.35,0.378]	chr7	312180	48	INTRON	INTRON	AKAP9	ENSG00000127914.19	ENST00000680534.1:ENST00000680513.1:ENST00000680072.1:ENST00000679821.1:ENST00000679554.1:ENST00000356239.8:ENST00000679521.1:ENST00000680181.1:ENST00000681722.1:ENST00000680766.1:ENST00000679448.1:ENST00000681412.1:ENST00000680047.1:ENST00000679474.1:ENST00000680952.1:ENST00000679457.1:ENST00000679722.1:ENST00000680074.1:ENST00000493453.1:ENST00000394564.5:ENST00000674381.2:ENST00000359028.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	91	2	2.63153	2.6898	2.74807	0.00562761	8.09805e-4	0.0653997	0.0259453
chr4	55417860	55417918	1960817	0	+	0.362069	(0.35,0.378]	chr4	196572	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TMEM165	ENSG00000134851.13	ENST00000381334.10:ENST00000506198.5:ENST00000508404.5:ENST00000514904.5:ENST00000508561.5:ENST00000608091.1:ENST00000509575.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	95	2	2.32464	2.68961	3.05458	0.0159285	1.63908e-4	0.101453	0.0110289
chr8	100943899	100943998	4005888	0	-	0.545455	(0.515,0.57]	chr8	366668	90	INTRON	INTRON	YWHAZ	ENSG00000164924.18	ENST00000395958.6:ENST00000395957.6:ENST00000457309.2:ENST00000395956.7:ENST00000353245.7:ENST00000521309.5:ENST00000522542.5:ENST00000395953.6:ENST00000395948.6:ENST00000395951.7:ENST00000419477.6:ENST00000521607.5:ENST00000480304.5:ENST00000518736.5:ENST00000517727.5:ENST00000521328.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	135	2	2.42857	2.689585	2.9506	3.71848e-4	9.37882e-5	0.0173669	0.00860621
chr1	1723607	1723699	361209	0	-	0.532609	(0.515,0.57]	chr1	42105	4	SS5_PROX	SS5_PROX:INTRON	CDK11A:ENSG00000268575	ENSG00000008128.23:ENSG00000268575.1	ENST00000404249.8:ENST00000598846.1:ENST00000357760.6:ENST00000358779.9:ENST00000378633.5:ENST00000460465.5:ENST00000479362.1:ENST00000487462.1:ENST00000401096.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA	3	48	2	2.65834	2.68957	2.7208	0.0187418	0.00306828	0.117523	0.0494933
chr10	32326920	32327020	4591442	0	-	0.36	(0.35,0.378]	chr10	423379	206	INTRON	INTRON	EPC1	ENSG00000120616.16	ENST00000375110.6:ENST00000319778.11:ENST00000667706.1:ENST00000263062.8:ENST00000479380.2:ENST00000495790.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	58	2	2.53856	2.689565	2.84057	0.0326077	0.00189462	0.133687	0.0402736
chr7	158653165	158653258	3688249	0	-	0.494624	(0.476,0.515]	chr7	342143	3	INTRON	INTRON	NCAPG2	ENSG00000146918.20	ENST00000356309.8:ENST00000432615.5:ENST00000409423.5:ENST00000441982.5:ENST00000467785.5:ENST00000409339.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	69	2	2.68023	2.689545	2.69886	0.00385209	0.00353671	0.0546236	0.0542786
chr3	129262205	129262305	1499264	0	+	0.4	(0.378,0.408]	chr3	156587	10	INTRON	INTRON	COPG1	ENSG00000181789.14	ENST00000314797.10:ENST00000515725.5:ENST00000504547.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	92	2	2.09986	2.68954	3.27922	0.00312717	0.00253099	0.0499153	0.0465056
chr15	50427812	50427910	6022249	0	+	0.5	(0.476,0.515]	chr15	573930	5	INTRON	INTRON	USP8	ENSG00000138592.14	ENST00000560297.5:ENST00000396444.7:ENST00000560954.5:ENST00000425032.7:ENST00000558892.1:ENST00000307179.9:ENST00000559329.5:ENST00000560885.5:ENST00000560730.5:ENST00000625664.2:ENST00000560982.5:ENST00000561211.5:ENST00000558091.5	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:nonsense_mediated_decay:processed_transcript	3	52	2	2.13304	2.6895	3.24596	0.024866	0.00322919	0.132101	0.0507087
chr5	112981860	112981955	2453430	0	+	0.505263	(0.476,0.515]	chr5	235068	3	INTRON	INTRON	DCP2	ENSG00000172795.17	ENST00000515408.5:ENST00000513585.6:ENST00000502635.2:ENST00000510046.1:ENST00000389063.3:ENST00000674880.1:ENST00000504961.1:ENST00000512751.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	52	2	2.13304	2.6895	3.24596	0.024866	0.00322919	0.132101	0.0507087
chr1	167952460	167952560	248647	0	+	0.47	(0.44,0.476]	chr1	29542	2	INTRON	INTRON	DCAF6	ENSG00000143164.16	ENST00000450548.5:ENST00000470919.5:ENST00000432587.6:ENST00000367843.7:ENST00000470721.5:ENST00000367840.4:ENST00000312263.10:ENST00000455334.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	93	2	1.79674	2.689465	3.58219	0.00717907	8.57842e-4	0.0756118	0.0267428
chr6	158817082	158817182	3253315	0	-	0.38	(0.378,0.408]	chr6	302380	274	INTRON	INTRON	EZR	ENSG00000092820.19	ENST00000337147.11:ENST00000367075.4:ENST00000476189.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	164	2	2.39937	2.68942	2.97947	5.77734e-4	2.2808e-4	0.0223108	0.0133228
chr2	15544926	15545026	1073000	0	-	0.5	(0.476,0.515]	chr2	114459	52	INTRON	INTRON	NBAS	ENSG00000151779.13	ENST00000281513.10	protein_coding	protein_coding	protein_coding	protein_coding	5	71	2	2.17892	2.689335	3.19975	0.0046578	0.00383299	0.0629753	0.0542786
chr10	63236670	63236770	4633094	0	-	0.41	(0.408,0.44]	chr10	426215	163	INTRON	INTRON	JMJD1C	ENSG00000171988.20	ENST00000399262.7:ENST00000402544.5:ENST00000542921.5:ENST00000469152.5:ENST00000489372.4:ENST00000633035.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	86	2	1.92319	2.6893000000000002	3.45541	0.0247322	7.81911e-5	0.12011	0.00736696
chr7	75477566	75477665	3558845	0	-	0.414141	(0.408,0.44]	chr7	331555	20	INTRON	INTRON	POM121C:ENSG00000242073	ENSG00000272391.6:ENSG00000242073.2	ENST00000615331.5:ENST00000398379.2:ENST00000415277.2	protein_coding	protein_coding	protein_coding:transcribed_unprocessed_pseudogene	protein_coding:transcribed_unprocessed_pseudogene	5	86	2	1.92319	2.6893000000000002	3.45541	0.0247322	7.81911e-5	0.12011	0.00736696
chr3	44782006	44782103	1412426	0	+	0.360825	(0.35,0.378]	chr3	148175	7	INTRON	INTRON	KIF15	ENSG00000163808.17	ENST00000438321.5:ENST00000326047.9:ENST00000481166.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	91	2	2.1686	2.689285	3.20997	0.0116706	3.32797e-4	0.0891208	0.0162254
chr11	64310182	64310281	4802932	0	+	0.434343	(0.408,0.44]	chr11	445644	23	INTRON	INTRON	ESRRA	ENSG00000173153.17	ENST00000406310.6:ENST00000000442.11:ENST00000677967.1:ENST00000539594.5:ENST00000405666.5	protein_coding	protein_coding	protein_coding	protein_coding	6	97	2	2.28817	2.68927	3.09037	0.00358507	5.47766e-4	0.0533855	0.0212924
chr5	146268530	146268618	2514779	0	+	0.375	(0.35,0.378]	chr5	240235	4	INTRON	INTRON	ENSG00000275740:RBM27	ENSG00000275740.1:ENSG00000091009.8	ENST00000506502.2:ENST00000265271.7	protein_coding	protein_coding	protein_coding	protein_coding	2	43	2	2.1617	2.689235	3.21677	0.0771502	0.00313804	0.196285	0.0514466
chr16	58543068	58543168	6495471	0	-	0.29	(0.28,0.32]	chr16	628471	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	CNOT1	ENSG00000125107.19	ENST00000317147.10:ENST00000569240.5:ENST00000567188.5:ENST00000566240.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	223	2	2.5973	2.689165	2.78103	0.00142715	5.96121e-5	0.0340925	0.00634993
chr19	39364502	39364601	7067422	0	+	0.373737	(0.35,0.378]	chr19	705699	45	INTRON	INTRON	SAMD4B	ENSG00000179134.16	ENST00000610417.5:ENST00000598913.5:ENST00000314471.10:ENST00000599712.1:ENST00000596368.1	protein_coding	protein_coding	protein_coding	protein_coding	3	58	2	1.75561	2.689165	3.62272	0.0739399	5.64719e-4	0.190914	0.021704
chr19	5708958	5709054	7124597	0	-	0.458333	(0.44,0.476]	chr19	717144	1	INTRON	INTRON	LONP1	ENSG00000196365.12	ENST00000360614.8:ENST00000587552.5:ENST00000540670.6:ENST00000593119.5:ENST00000585374.5:ENST00000590558.5:ENST00000590729.5:ENST00000587365.1:ENST00000586617.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	94	1448	2	2.43919	2.68916	2.93913	1.19547e-5	5.80073e-8	0.00274722	1.04725e-4
chr17	61983614	61983670	6810044	0	-	0.375	(0.35,0.378]	chr17	672879	1	INTRON	INTRON	MED13	ENSG00000108510.10	ENST00000397786.7	protein_coding	protein_coding	protein_coding	protein_coding	4	76	2	2.32464	2.689155	3.05367	0.0159285	7.17897e-4	0.101453	0.0244389
chrX	153914477	153914576	7911570	0	-	0.515152	(0.476,0.515]	chrX	805259	2	INTRON	INTRON	ARHGAP4	ENSG00000089820.16	ENST00000393721.5:ENST00000370028.7:ENST00000420383.5:ENST00000350060.10:ENST00000370016.5:ENST00000470209.5:ENST00000494302.5:ENST00000404127.6:ENST00000494813.5:ENST00000422918.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	71	2	1.71266	2.689155	3.66565	0.0293304	4.18031e-4	0.128055	0.0182827
chr12	53579489	53579589	5328546	0	-	0.48	(0.476,0.515]	chr12	508398	265	INTRON	INTRON	ATF7	ENSG00000170653.19	ENST00000548446.6:ENST00000420353.7:ENST00000456903.8:ENST00000588232.5:ENST00000551480.2:ENST00000588078.5:ENST00000591397.1:ENST00000548118.6	protein_coding	protein_coding	protein_coding	protein_coding	4	70	2	2.26789	2.68905	3.11021	0.0176567	5.02606e-4	0.105233	0.020217099999999998
chr7	158765853	158765953	3689169	0	-	0.48	(0.476,0.515]	chr7	342381	6	INTRON	INTRON	ESYT2	ENSG00000117868.18	ENST00000251527.10:ENST00000275418.13:ENST00000652148.1	protein_coding	protein_coding	protein_coding	protein_coding	4	70	2	2.26789	2.68905	3.11021	0.0176567	5.02606e-4	0.105233	0.020217099999999998
chrX	154801368	154801465	7915572	0	-	0.360825	(0.35,0.378]	chrX	806179	11	INTRON	INTRON	MPP1	ENSG00000130830.15	ENST00000369534.8:ENST00000413259.7:ENST00000439370.5:ENST00000393531.5:ENST00000453245.5:ENST00000494170.1:ENST00000393529.5:ENST00000475943.5:ENST00000428488.1:ENST00000417435.5:ENST00000369531.1:ENST00000471821.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	127	2	1.9257	2.68905	3.4524	0.00586705	1.6322e-4	0.0690758	0.0116917
chr22	39319271	39319371	7589808	0	-	0.49	(0.476,0.515]	chr22	777109	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	RPL3	ENSG00000100316.16	ENST00000216146.9:ENST00000465618.5:ENST00000402527.5:ENST00000427905.5:ENST00000420536.1:ENST00000484615.5:ENST00000460589.5:ENST00000461967.1:ENST00000498462.1:ENST00000459859.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	71	2	2.64581	2.68893	2.73205	0.0159328	0.00154394	0.109464	0.0357205
chr17	30494826	30494925	6589239	0	+	0.454545	(0.44,0.476]	chr17	640810	17	INTRON	INTRON	GOSR1	ENSG00000108587.16	ENST00000225724.9:ENST00000451249.7:ENST00000427274.6:ENST00000467337.6:ENST00000581721.5:ENST00000414833.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	52	2	1.96602	2.6888900000000002	3.41176	0.0426807	0.00130987	0.148082	0.0333932
chr5	32428078	32428178	2599162	0	-	0.45	(0.44,0.476]	chr5	246966	76	INTRON	INTRON	ZFR	ENSG00000056097.16	ENST00000265069.13:ENST00000505366.1:ENST00000505204.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	52	2	1.96602	2.6888900000000002	3.41176	0.0426807	0.00130987	0.148082	0.0333932
chr11	32905610	32905710	4764839	0	+	0.28	[0,0.28]	chr11	440609	119	INTRON	INTRON	QSER1	ENSG00000060749.16	ENST00000650167.2:ENST00000399302.7:ENST00000527250.5	protein_coding	protein_coding	protein_coding	protein_coding	4	103	2	2.17149	2.68889	3.20629	0.0308079	5.56536e-4	0.13151	0.0214853
chr5	171400568	171400658	2546698	0	+	0.5	(0.476,0.515]	chr5	243103	5	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NPM1	ENSG00000181163.14	ENST00000517671.5:ENST00000676613.1:ENST00000678186.1:ENST00000678267.1:ENST00000677297.1:ENST00000521672.6:ENST00000679190.1:ENST00000677467.1:ENST00000678280.1:ENST00000676625.1:ENST00000679006.1:ENST00000351986.10:ENST00000676504.1:ENST00000676589.1:ENST00000677357.1:ENST00000679233.1:ENST00000296930.10:ENST00000393820.2:ENST00000521260.2:ENST00000518587.2:ENST00000678774.1:ENST00000677600.1:ENST00000677741.1:ENST00000677325.1:ENST00000677672.1:ENST00000677907.1:ENST00000677904.1:ENST00000677682.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	157	2	2.56482	2.688785	2.81275	2.81185e-4	2.05882e-4	0.015437	0.0124708
chr2	173950280	173950380	1268920	0	-	0.3	(0.28,0.32]	chr2	134213	155	INTRON	INTRON	SP3	ENSG00000172845.18	ENST00000650743.1:ENST00000310015.12:ENST00000416195.1:ENST00000418194.7:ENST00000652005.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	107	2	2.53648	2.688775	2.84107	0.00925866	6.40806e-4	0.0817766	0.0228915
chr16	18397834	18397933	6455035	0	-	0.525253	(0.515,0.57]	chr16	622259	15	INTRON	INTRON	PKD1P5	ENSG00000254681.6	ENST00000532415.5:ENST00000544578.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	4	54	2	1.88259	2.6887749999999997	3.49496	0.0251849	9.61701e-4	0.133519	0.0282401
chrX	13341330	13341430	7622369	0	+	0.49	(0.476,0.515]	chrX	780350	2	SS3_PROX	SS3_PROX:INTRON	LINC01203	ENSG00000226985.7	ENST00000669963.1:ENST00000661545.1:ENST00000659526.1:ENST00000656410.1:ENST00000661104.1:ENST00000456091.2:ENST00000655502.1:ENST00000671651.1:ENST00000656979.1:ENST00000656271.1:ENST00000661629.1:ENST00000661464.1:ENST00000419566.5:ENST00000668192.1:ENST00000665887.1:ENST00000659191.1:ENST00000667868.1:ENST00000653729.1:ENST00000656111.1	lncRNA	lncRNA	lncRNA	lncRNA	16	253	2	2.60358	2.68873	2.77388	7.88925e-5	3.321e-5	0.00796625	0.00461719
chr1	35189939	35189997	420572	0	-	0.413793	(0.408,0.44]	chr1	50678	2	INTRON	INTRON	SFPQ	ENSG00000116560.12	ENST00000470472.5:ENST00000696553.1:ENST00000357214.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	40	589	2	2.36317	2.688715	3.01426	3.30192e-5	6.20604e-6	0.0048507	0.00174945
chr16	22416571	22416671	6463185	0	-	0.5	(0.476,0.515]	chr16	623638	416	INTRON	INTRON	CDR2	ENSG00000140743.8	ENST00000564542.5:ENST00000563573.5:ENST00000569045.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	70	2	2.53671	2.688695	2.84068	0.00624027	0.00217133	0.0718843	0.0417893
chr21	43889097	43889197	7414029	0	+	0.4	(0.378,0.408]	chr21	755692	61	INTRON	INTRON	AGPAT3	ENSG00000160216.21	ENST00000291572.13:ENST00000448287.5:ENST00000398061.5	protein_coding	protein_coding	protein_coding	protein_coding	4	64	2	2.14029	2.688685	3.23708	0.0106742	0.00365053	0.0917199	0.0535094
chr1	37681763	37681860	424592	0	-	0.216495	[0,0.28]	chr1	51388	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	C1orf109	ENSG00000116922.15	ENST00000494120.1:ENST00000486637.2:ENST00000358011.8:ENST00000609516.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	103	2	2.56073	2.688575	2.81642	0.00743095	0.00431467	0.0772645	0.0578825
chr2	86964508	86964606	824647	0	+	0.469388	(0.44,0.476]	chr2	92143	9	INTRON	INTRON	RGPD1	ENSG00000187627.17	ENST00000409776.6:ENST00000398193.8:ENST00000641458.2	protein_coding	protein_coding	protein_coding	protein_coding	5	83	2	2.67282	2.6885149999999998	2.70421	0.00433875	9.23275e-4	0.0579868	0.0278392
chr3	152269613	152269695	1534990	0	+	0.52439	(0.515,0.57]	chr3	159978	3	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	MBNL1	ENSG00000152601.18	ENST00000477171.1:ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000461436.1:ENST00000495875.6:ENST00000324210.10:ENST00000493459.5:ENST00000459747.1:ENST00000460591.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	60	2	2.57298	2.68849	2.804	0.00506495	0.00215855	0.0646039	0.0417866
chr9	125209308	125209407	4197994	0	+	0.525253	(0.515,0.57]	chr9	383098	12	INTRON	INTRON	RABEPK	ENSG00000136933.17	ENST00000373538.8:ENST00000259460.12:ENST00000394125.8:ENST00000628863.2:ENST00000373544.5:ENST00000416065.1	protein_coding	protein_coding	protein_coding	protein_coding	4	60	2	2.57298	2.68849	2.804	0.00506495	0.00215855	0.0646039	0.0417866
chr11	65435354	65435454	4805896	0	+	0.32	(0.28,0.32]	chr11	446554	127	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	30	602	2	2.51769	2.688465	2.85924	1.8903e-4	2.89797e-6	0.012565	0.00109346
chr7	38376737	38376835	3308676	0	+	0.336735	(0.32,0.35]	chr7	307322	13	EXON_LNCRNA	EXON_LNCRNA	TRG-AS1	ENSG00000281103.3	ENST00000629357.1:ENST00000661780.1	lncRNA	lncRNA	lncRNA	lncRNA	3	63	2	2.53107	2.68838	2.84569	0.0121137	0.00860484	0.0962599	0.0784134
chr19	47267192	47267292	7084813	0	+	0.54	(0.515,0.57]	chr19	708865	4	SS5_PROX	SS5_PROX:INTRON	CCDC9	ENSG00000105321.14	ENST00000643617.1:ENST00000221922.11:ENST00000600117.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	117	2	2.34988	2.688375	3.02687	0.00194926	5.94368e-5	0.0410995	0.00676403
chr16	8087422	8087522	6441383	0	-	0.3	(0.28,0.32]	chr16	620351	798	INTRON	INTRON	ENSG00000260289	ENSG00000260289.2	ENST00000670665.1:ENST00000654046.1:ENST00000567103.2	lncRNA	lncRNA	lncRNA	lncRNA	4	90	2	2.55521	2.6883600000000003	2.82151	0.0067419	0.00341865	0.0739405	0.0517761
chr3	169971065	169971164	1556521	0	+	0.414141	(0.408,0.44]	chr3	161215	13	INTRON	INTRON	SEC62	ENSG00000008952.17	ENST00000460513.5:ENST00000337002.9:ENST00000480708.5:ENST00000487736.5:ENST00000469515.6:ENST00000481435.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	62	2	2.13157	2.688335	3.2451	0.0109031	0.00337792	0.0923273	0.0516884
chr5	141542403	141542503	2739391	0	-	0.38	(0.378,0.408]	chr5	258065	76	INTRON	INTRON	DIAPH1	ENSG00000131504.18	ENST00000647433.1:ENST00000389054.8:ENST00000518047.5:ENST00000491754.5:ENST00000518484.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	83	2	1.61488	2.6883150000000002	3.76175	0.029782200000000002	2.68579e-4	0.129138	0.0145349
chr3	37244510	37244607	1395763	0	+	0.402062	(0.378,0.408]	chr3	146301	5	INTRON	INTRON	GOLGA4	ENSG00000144674.17	ENST00000435830.6:ENST00000444882.5:ENST00000356847.8:ENST00000450863.6:ENST00000361924.7:ENST00000429018.5:ENST00000431105.1:ENST00000419177.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	16	252	2	2.66613	2.688255	2.71038	2.84674e-4	1.64243e-5	0.015495	0.00305736
chr2	232710643	232710743	1037372	0	+	0.31	(0.28,0.32]	chr2	110616	48	INTRON	INTRON	GIGYF2	ENSG00000204120.16	ENST00000476995.5:ENST00000629305.2:ENST00000427233.5:ENST00000428883.5:ENST00000409480.5:ENST00000456491.5:ENST00000484409.1:ENST00000492910.5:ENST00000373563.9:ENST00000409547.5:ENST00000430720.5:ENST00000425040.5:ENST00000421433.5:ENST00000475359.6:ENST00000490612.5:ENST00000464402.5:ENST00000488629.5:ENST00000423659.5:ENST00000409196.7:ENST00000488734.5:ENST00000409451.7:ENST00000463554.5:ENST00000440945.5:ENST00000429187.5:ENST00000482666.5:ENST00000490229.5:ENST00000483164.5:ENST00000464805.5:ENST00000489328.1:ENST00000424038.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	79	2	1.86798	2.68817	3.50836	0.0335733	0.00117393	0.134145	0.0316446
chr8	102357773	102357873	4012202	0	-	0.23	[0,0.28]	chr8	367218	103	INTRON	INTRON	UBR5	ENSG00000104517.13	ENST00000520539.6:ENST00000220959.8:ENST00000521922.5	protein_coding	protein_coding	protein_coding	protein_coding	4	92	2	2.55703	2.6881250000000003	2.81922	0.0197411	0.00276846	0.109608	0.048706
chr7	111472942	111473042	3623216	0	-	0.24	[0,0.28]	chr7	337108	802	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000452895.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding	2	57	2	2.43761	2.688055	2.9385	0.0423864	0.0142776	0.161744	0.0963703
chr2	112657838	112657935	852187	0	+	0.28866000000000003	(0.28,0.32]	chr2	95593	2	INTRON	INTRON	SLC20A1	ENSG00000144136.11	ENST00000272542.8:ENST00000498224.5:ENST00000433924.5:ENST00000456264.5:ENST00000413135.1:ENST00000480984.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	78	2	2.1076	2.68805	3.2685	0.0133585	0.00432734	0.100772	0.0579331
chr10	15840632	15840729	4564972	0	-	0.309278	(0.28,0.32]	chr10	421244	20	INTRON	INTRON	MINDY3	ENSG00000148481.14	ENST00000477891.1:ENST00000277632.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	48	2	2.51488	2.688005	2.86113	0.0380957	0.0122675	0.141678	0.0969406
chr19	58189040	58189140	7106263	0	+	0.31	(0.28,0.32]	chr19	713269	16	INTRON	INTRON	ZNF274	ENSG00000171606.18	ENST00000424679.6:ENST00000617501.5:ENST00000621145.4:ENST00000345813.7:ENST00000619307.4:ENST00000615675.4:ENST00000326804.8:ENST00000610905.4:ENST00000594839.5:ENST00000601995.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	48	2	2.51488	2.688005	2.86113	0.0380957	0.0122675	0.141678	0.0969406
chr21	7059247	7059347	7365323	0	+	0.3	(0.28,0.32]	chr21	751699	98	INTRON	INTRON	ENSG00000277067	ENSG00000277067.4	ENST00000623095.3:ENST00000622911.1:ENST00000621909.4:ENST00000623394.3:ENST00000624310.1	lncRNA	lncRNA	lncRNA	lncRNA	2	48	2	2.51488	2.688005	2.86113	0.0380957	0.0122675	0.141678	0.0969406
chr5	32431168	32431268	2599193	0	-	0.29	(0.28,0.32]	chr5	246966	107	INTRON	INTRON	ZFR	ENSG00000056097.16	ENST00000265069.13:ENST00000505366.1:ENST00000505204.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	48	2	2.51488	2.688005	2.86113	0.0380957	0.0122675	0.141678	0.0969406
chr3	170868108	170868201	1863150	0	-	0.376344	(0.35,0.378]	chr3	186748	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPL22L1	ENSG00000163584.18	ENST00000295830.13:ENST00000478578.1:ENST00000475836.5:ENST00000466674.5:ENST00000494771.5:ENST00000463836.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	57	2	2.32464	2.6879999999999997	3.05136	0.0159285	0.00578894	0.101453	0.0684334
chr8	73875837	73875936	3972231	0	-	0.50505	(0.476,0.515]	chr8	364253	52	INTRON	INTRON	ENSG00000258677:UBE2W	ENSG00000258677.2:ENSG00000104343.21	ENST00000358757.5:ENST00000602593.6:ENST00000517608.5:ENST00000650817.1:ENST00000422906.6:ENST00000419880.7:ENST00000651945.1:ENST00000519277.5:ENST00000519255.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	51	2	2.43242	2.68796	2.9435	0.00929849	0.0091895	0.0855292	0.0817766
chr8	81720651	81720751	3979567	0	-	0.48	(0.476,0.515]	chr8	364648	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ZFAND1	ENSG00000104231.11	ENST00000220669.10:ENST00000523096.5:ENST00000522520.5:ENST00000519464.5:ENST00000521895.5:ENST00000521287.5:ENST00000523431.5:ENST00000520635.5:ENST00000519523.5:ENST00000517588.5:ENST00000520604.5:ENST00000523361.5:ENST00000521742.5:ENST00000517450.5:ENST00000518419.5:ENST00000520076.5:ENST00000524339.5:ENST00000517353.5:ENST00000519820.5:ENST00000521885.5:ENST00000520941.5:ENST00000523012.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	51	2	2.37731	2.6879150000000003	2.99852	0.0111793	0.0077575	0.0937192	0.0757402
chr13	20081715	20081815	5453690	0	+	0.37	(0.35,0.378]	chr13	522570	3	SS3_PROX	SS3_PROX:INTRON	ZMYM2	ENSG00000121741.17	ENST00000382874.6:ENST00000610343.5:ENST00000382871.3:ENST00000382883.7:ENST00000382870.7:ENST00000494061.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	42	2	2.32443	2.687895	3.05136	0.0544216	0.00578894	0.164972	0.0684334
chr20	47511414	47511514	7281092	0	+	0.37	(0.35,0.378]	chr20	740469	90	INTRON	INTRON	NCOA3	ENSG00000124151.19	ENST00000371998.8:ENST00000372004.7:ENST00000371997.3	protein_coding	protein_coding	protein_coding	protein_coding	2	42	2	2.32443	2.687895	3.05136	0.0544216	0.00578894	0.164972	0.0684334
chr16	21420927	21421021	6460518	0	-	0.43617	(0.408,0.44]	chr16	623198	8	INTRON	INTRON	NPIPB3	ENSG00000169246.16	ENST00000504841.6:ENST00000419180.6:ENST00000519305.6:ENST00000521589.5:ENST00000534903.1:ENST00000538439.1:ENST00000545358.5:ENST00000535190.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	80	2	1.58622	2.687795	3.78937	0.0291748	3.51772e-4	0.141552	0.0174637
chrX	44916785	44916885	7649038	0	+	0.47	(0.44,0.476]	chrX	782726	424	INTRON	INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000675440.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000621147.5:ENST00000475233.1:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	83	2	2.32184	2.687785	3.05373	0.00609071	6.56725e-4	0.0676501	0.0232396
chr1	179101925	179102025	591784	0	-	0.21	[0,0.28]	chr1	71006	27	UTR3	UTR3:EXON_MRNA	ABL2	ENSG00000143322.21	ENST00000502732.6	protein_coding	protein_coding	protein_coding	protein_coding	4	89	2	2.09841	2.687745	3.27708	0.0151026	0.00517359	0.108435	0.0631676
chr4	39749689	39749788	1953509	0	+	0.252525	[0,0.28]	chr4	195642	35	INTRON	INTRON	UBE2K	ENSG00000078140.14	ENST00000510934.5:ENST00000261427.10:ENST00000438068.6:ENST00000513231.5:ENST00000503368.5:ENST00000445950.2:ENST00000510719.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	89	2	2.09841	2.687745	3.27708	0.0151026	0.00517359	0.108435	0.0631676
chr2	58188923	58188996	1126215	0	-	0.315068	(0.28,0.32]	chr2	120907	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	FANCL	ENSG00000115392.13	ENST00000696400.1:ENST00000403295.8:ENST00000696492.1:ENST00000427708.7:ENST00000696314.1:ENST00000696315.1:ENST00000696454.1:ENST00000696508.1:ENST00000696548.1:ENST00000696542.1:ENST00000696432.1:ENST00000696319.1:ENST00000403676.6:ENST00000696433.1:ENST00000696434.1:ENST00000696499.1:ENST00000696564.1:ENST00000402135.8:ENST00000696546.1:ENST00000233741.9:ENST00000696316.1:ENST00000696378.1:ENST00000696435.1:ENST00000696493.1:ENST00000696543.1:ENST00000696544.1:ENST00000696545.1:ENST00000696565.1:ENST00000696620.1:ENST00000696621.1:ENST00000696635.1:ENST00000696364.1:ENST00000696634.1:ENST00000696619.1:ENST00000696317.1:ENST00000696622.1:ENST00000696467.1:ENST00000696547.1:ENST00000449070.6:ENST00000696305.1:ENST00000417361.2:ENST00000696338.1:ENST00000696361.1:ENST00000696318.1:ENST00000696371.1:ENST00000696409.1:ENST00000696410.1:ENST00000696455.1:ENST00000696468.1:ENST00000696527.1:ENST00000696567.1:ENST00000696324.1:ENST00000696566.1:ENST00000696623.1:ENST00000446381.6:ENST00000696469.1:ENST00000696624.1:ENST00000696411.1:ENST00000696475.1:ENST00000470506.2:ENST00000696358.1:ENST00000696373.1:ENST00000696394.1:ENST00000696320.1:ENST00000696339.1:ENST00000696395.1:ENST00000696341.1:ENST00000696340.1:ENST00000696374.1:ENST00000696396.1:ENST00000696342.1:ENST00000696325.1:ENST00000696399.1:ENST00000696398.1:ENST00000696306.1:ENST00000696397.1:ENST00000696360.1:ENST00000696344.1:ENST00000696343.1:ENST00000696637.1:ENST00000696362.1:ENST00000696528.1:ENST00000696497.1:ENST00000696326.1:ENST00000696638.1:ENST00000696625.1:ENST00000696510.1:ENST00000696438.1:ENST00000696496.1:ENST00000696509.1:ENST00000696569.1:ENST00000696457.1:ENST00000696458.1:ENST00000696473.1:ENST00000696495.1:ENST00000696415.1:ENST00000696472.1:ENST00000696494.1:ENST00000696363.1:ENST00000696414.1:ENST00000696529.1:ENST00000696471.1:ENST00000696459.1:ENST00000696498.1:ENST00000696532.1:ENST00000696416.1:ENST00000696530.1:ENST00000696460.1:ENST00000696570.1:ENST00000696531.1:ENST00000696307.1:ENST00000696401.1:ENST00000696345.1:ENST00000696377.1:ENST00000696417.1:ENST00000696594.1:ENST00000696595.1:ENST00000696379.1:ENST00000696346.1:ENST00000696380.1:ENST00000696347.1:ENST00000696461.1:ENST00000696596.1:ENST00000696549.1:ENST00000696597.1:ENST00000696550.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	90	2	1.79739	2.687735	3.57808	0.0224995	0.00141407	0.124921	0.0340865
chr17	59735744	59735820	6642676	0	+	0.328947	(0.32,0.35]	chr17	648724	1	SS5_PROX	SS5_PROX:INTRON	VMP1	ENSG00000062716.13	ENST00000593168.5:ENST00000586245.5:ENST00000585847.5:ENST00000262291.9:ENST00000587945.1:ENST00000589823.6:ENST00000592106.5:ENST00000591315.5:ENST00000587259.5:ENST00000592619.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	83	2	2.21292	2.687645	3.16237	0.00550276	0.00445585	0.0648867	0.0610799
chr3	9426175	9426275	1359176	0	+	0.29	(0.28,0.32]	chr3	142681	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	SETD5	ENSG00000168137.20	ENST00000402198.7:ENST00000431285.5:ENST00000683012.1:ENST00000463180.5:ENST00000478475.5:ENST00000415650.5:ENST00000682536.1:ENST00000663774.1:ENST00000665872.1:ENST00000666307.1:ENST00000693430.1:ENST00000691925.1:ENST00000684606.1:ENST00000691175.1:ENST00000688835.1:ENST00000683262.1:ENST00000443339.5:ENST00000406341.5:ENST00000670063.1:ENST00000468208.2:ENST00000691299.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	65	2	2.59504	2.6875400000000003	2.78004	0.0193244	0.00582473	0.108861	0.0687439
chr10	130176475	130176574	4536739	0	+	0.40404	(0.378,0.408]	chr10	418830	10	INTRON	INTRON	GLRX3	ENSG00000108010.12	ENST00000331244.10:ENST00000481034.1:ENST00000368644.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	99	2	2.57351	2.68753	2.80155	0.00278307	7.32287e-4	0.0469265	0.0246502
chr2	9537657	9537757	1064307	0	-	0.52	(0.515,0.57]	chr2	113543	2	SS5_PROX	SS5_PROX:INTRON	ADAM17	ENSG00000151694.14	ENST00000310823.8:ENST00000648548.1:ENST00000649227.1:ENST00000648857.1:ENST00000647979.1:ENST00000647610.1:ENST00000650116.1:ENST00000649686.1:ENST00000647622.1:ENST00000649972.1:ENST00000650241.1:ENST00000618923.2:ENST00000478059.1:ENST00000648002.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	61	2	2.11946	2.687465	3.25547	0.00559899	0.00261721	0.0678837	0.0455413
chr15	65786627	65786726	6209740	0	-	0.353535	(0.35,0.378]	chr15	592617	194	INTRON	INTRON	DENND4A	ENSG00000174485.16	ENST00000443035.8:ENST00000431932.6:ENST00000564674.5:ENST00000568515.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	42	2	2.6498	2.687385	2.72497	0.0210137	0.0198266	0.122348	0.109608
chr1	100443496	100443595	173544	0	+	0.454545	(0.44,0.476]	chr1	18842	1	INTRON	INTRON	CDC14A	ENSG00000079335.20	ENST00000646665.1:ENST00000644844.1:ENST00000635056.2:ENST00000647005.1:ENST00000647203.1:ENST00000644676.1:ENST00000361544.11:ENST00000370124.8:ENST00000336454.5:ENST00000644813.1:ENST00000455467.6:ENST00000646563.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	62	2	1.98146	2.68734	3.39322	0.0186013	0.00187283	0.117264	0.0390476
chr20	17941881	17941976	7320280	0	-	0.463158	(0.44,0.476]	chr20	745265	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	SNX5	ENSG00000089006.17	ENST00000377768.7:ENST00000490175.5:ENST00000483485.5:ENST00000377759.9:ENST00000606570.1:ENST00000484809.1:ENST00000491090.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	62	2	1.98146	2.68734	3.39322	0.0186013	0.00187283	0.117264	0.0390476
chr7	158930815	158930915	3456899	0	+	0.47	(0.44,0.476]	chr7	323252	3	SS5_PROX	SS5_PROX:INTRON	DYNC2I1	ENSG00000126870.16	ENST00000407559.8:ENST00000444851.5:ENST00000467220.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	62	2	1.98146	2.68734	3.39322	0.0186013	0.00187283	0.117264	0.0390476
chr21	37199174	37199267	7406151	0	+	0.602151	(0.57,1]	chr21	754820	8	INTRON	INTRON	TTC3	ENSG00000182670.14	ENST00000492275.6:ENST00000418766.6:ENST00000450533.6:ENST00000696812.1:ENST00000696811.1:ENST00000463216.6:ENST00000411496.2:ENST00000399017.6:ENST00000354749.6:ENST00000479930.5:ENST00000476784.5:ENST00000428693.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	28	2	2.47993	2.68728	2.89463	0.00788262	0.007207	0.076155	0.0756278
chr17	46941551	46941644	6620902	0	+	0.387097	(0.378,0.408]	chr17	645733	11	UTR3	UTR3:EXON_MRNA:INTRON	GOSR2	ENSG00000108433.17	ENST00000640608.1:ENST00000640792.1:ENST00000640358.1:ENST00000638634.1:ENST00000573224.2:ENST00000639985.1:ENST00000639199.1:ENST00000639365.1:ENST00000638892.1:ENST00000638216.1:ENST00000638579.1:ENST00000638189.1:ENST00000639066.1:ENST00000640051.2:ENST00000638697.1:ENST00000640443.1:ENST00000638219.1:ENST00000639388.1:ENST00000640495.1:ENST00000640138.1:ENST00000572403.5:ENST00000640723.1:ENST00000638468.1:ENST00000639713.1:ENST00000640866.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	54	2	1.94681	2.687155	3.4275	0.0457723	0.00126053	0.149888	0.03295
chr16	22330164	22330262	6321883	0	+	0.520408	(0.515,0.57]	chr16	605284	12	INTRON	INTRON	POLR3E	ENSG00000058600.16	ENST00000615879.4:ENST00000299853.10:ENST00000564209.5:ENST00000418581.6:ENST00000359210.8:ENST00000564750.5:ENST00000563282.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	71	2	2.45375	2.6871	2.92045	0.00273605	0.00128922	0.0483437	0.0328334
chr1	2251066	2251166	2394	0	+	0.63	(0.57,1]	chr1	557	26	INTRON	INTRON	SKI	ENSG00000157933.10	ENST00000378536.5:ENST00000508416.1:ENST00000478223.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	28	2	2.28103	2.68708	3.09313	0.0151554	0.00369015	0.108535	0.0535094
chr17	49723293	49723393	6793743	0	-	0.6	(0.57,1]	chr17	670409	3	INTRON	INTRON	FAM117A	ENSG00000121104.8	ENST00000240364.7:ENST00000513602.5:ENST00000511743.5:ENST00000503855.5:ENST00000514018.5:ENST00000505159.5:ENST00000506156.1:ENST00000515240.5:ENST00000509347.5:ENST00000503720.1:ENST00000514841.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	28	2	2.28103	2.68708	3.09313	0.0151554	0.00369015	0.108535	0.0535094
chr2	200863800	200863900	1310108	0	-	0.54	(0.515,0.57]	chr2	137053	3	SS5_PROX	SS5_PROX:INTRON	CLK1	ENSG00000013441.17	ENST00000321356.9:ENST00000473565.5:ENST00000432425.5:ENST00000409403.6:ENST00000434813.3:ENST00000492793.1:ENST00000481641.1:ENST00000482590.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	12	165	2	2.58138	2.687045	2.79271	1.47753e-4	5.53241e-5	0.0105566	0.00651834
chr1	171508761	171508861	253447	0	+	0.31	(0.28,0.32]	chr1	30096	227	INTRON	INTRON	PRRC2C	ENSG00000117523.18	ENST00000647382.2:ENST00000367742.7:ENST00000476522.5:ENST00000338920.8:ENST00000467601.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	48	2	2.45545	2.686885	2.91832	0.0438092	0.0102484	0.14901	0.089002
chr6	15262355	15262455	2823109	0	+	0.32	(0.28,0.32]	chr6	265190	130	INTRON	INTRON	JARID2	ENSG00000008083.14	ENST00000341776.7:ENST00000397311.4	protein_coding	protein_coding	protein_coding	protein_coding	2	48	2	2.45545	2.686885	2.91832	0.0438092	0.0102484	0.14901	0.089002
chr7	136101313	136101413	3431265	0	+	0.29	(0.28,0.32]	chr7	319905	79	INTRON	INTRON	ENSG00000232053	ENSG00000232053.7	ENST00000657456.1:ENST00000668062.1:ENST00000668668.1:ENST00000445293.6:ENST00000659747.1:ENST00000668896.1:ENST00000435996.1	lncRNA	lncRNA	lncRNA	lncRNA	2	48	2	2.45545	2.686885	2.91832	0.0438092	0.0102484	0.14901	0.089002
chr10	74028336	74028435	4454804	0	+	0.393939	(0.378,0.408]	chr10	411391	111	INTRON	INTRON	VCL	ENSG00000035403.18	ENST00000623461.3:ENST00000372755.7:ENST00000624354.3:ENST00000211998.10:ENST00000478896.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	54	2	2.26009	2.686845	3.1136	0.0188651	0.00443339	0.108861	0.061054
chr6	17702983	17703082	3066175	0	-	0.515152	(0.476,0.515]	chr6	284872	140	INTRON	INTRON	NUP153	ENSG00000124789.12	ENST00000613258.4:ENST00000537253.5:ENST00000262077.3	protein_coding	protein_coding	protein_coding	protein_coding	10	168	2	2.372	2.686835	3.00167	0.00103712	4.55686e-5	0.0295413	0.00583644
chr1	145647174	145647267	210389	0	+	0.290323	(0.28,0.32]	chr1	22988	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	GPR89A	ENSG00000117262.19	ENST00000313835.14:ENST00000460277.5:ENST00000528944.5:ENST00000466593.5:ENST00000534502.5:ENST00000462900.2:ENST00000478703.5:ENST00000493684.5:ENST00000465185.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	48	2	2.57195	2.68676	2.80157	0.0331711	0.0147132	0.133994	0.106558
chr6	158569822	158569922	3021696	0	+	0.6	(0.57,1]	chr6	281792	92	INTRON	INTRON	TMEM181	ENSG00000146433.10	ENST00000367090.4:ENST00000684151.1	protein_coding	protein_coding	protein_coding	protein_coding	5	45	2	2.1643	2.6867349999999997	3.20917	0.00941704	2.02775e-4	0.0861183	0.0129814
chr3	138672187	138672287	1829849	0	-	0.37	(0.35,0.378]	chr3	183941	66	INTRON	INTRON	PIK3CB	ENSG00000051382.9	ENST00000674063.1:ENST00000289153.6:ENST00000477593.5:ENST00000469284.6:ENST00000544716.5:ENST00000462898.5:ENST00000481749.5:ENST00000493568.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	67	2	2.20096	2.6867	3.17244	0.0087123	0.00487788	0.0844834	0.0607461
chr17	30734159	30734257	6589827	0	+	0.602041	(0.57,1]	chr17	640847	2	EXON_LNCRNA	EXON_LNCRNA:INTRON	SUZ12P1	ENSG00000264538.7	ENST00000578070.5:ENST00000579526.5:ENST00000690405.1:ENST00000497969.6:ENST00000578195.6:ENST00000582557.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	4	34	2	1.74185	2.6865449999999997	3.63124	0.0401765	2.87208e-4	0.143911	0.0150568
chr4	55402436	55402536	1960654	0	+	0.37	(0.35,0.378]	chr4	196546	28	INTRON	INTRON	TMEM165	ENSG00000134851.13	ENST00000381334.10:ENST00000506198.5:ENST00000508404.5:ENST00000511710.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	10	167	2	1.62064	2.6865200000000002	3.7524	0.0187402	2.17936e-6	0.108861	9.20638e-4
chr1	23321127	23321227	399355	0	-	0.42	(0.408,0.44]	chr1	47854	2	SS5_PROX	SS5_PROX:INTRON	HNRNPR	ENSG00000125944.21	ENST00000478691.5:ENST00000302271.11:ENST00000374616.7:ENST00000374612.5:ENST00000675048.1:ENST00000606561.5:ENST00000427764.3:ENST00000463552.5:ENST00000470941.5:ENST00000476451.2	protein_coding	protein_coding	protein_coding	protein_coding	11	177	2	2.52881	2.68649	2.84417	6.62749e-4	3.56421e-5	0.0234815	0.00477817
chr10	75221470	75221563	4464450	0	+	0.516129	(0.515,0.57]	chr10	411838	1	INTRON	INTRON	VDAC2	ENSG00000165637.14	ENST00000543351.5:ENST00000298468.9:ENST00000472137.5:ENST00000332211.11:ENST00000313132.8:ENST00000498394.5:ENST00000447677.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	85	2	2.57713	2.686425	2.79572	0.00176427	5.08572e-4	0.0376652	0.0202333
chr3	47769125	47769225	1684949	0	-	0.53	(0.515,0.57]	chr3	172116	228	INTRON	INTRON	SMARCC1	ENSG00000173473.11	ENST00000254480.10:ENST00000425518.5:ENST00000454240.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	85	2	2.57713	2.686425	2.79572	0.00176427	5.08572e-4	0.0376652	0.0202333
chr5	151777414	151777514	2521848	0	+	0.42	(0.408,0.44]	chr5	241285	4	SS3_PROX	SS3_PROX:INTRON	G3BP1	ENSG00000145907.16	ENST00000523519.5:ENST00000520578.6:ENST00000627077.2:ENST00000678976.1:ENST00000677408.1:ENST00000678070.1:ENST00000678964.1:ENST00000678925.1:ENST00000394123.7:ENST00000676978.1:ENST00000679289.1:ENST00000677493.1:ENST00000676644.1:ENST00000677757.1:ENST00000522761.6:ENST00000677909.1:ENST00000676827.1:ENST00000520177.6:ENST00000676634.1:ENST00000678854.1:ENST00000677602.1:ENST00000519832.1:ENST00000518726.5:ENST00000676911.1:ENST00000356245.8:ENST00000678646.1:ENST00000677381.1:ENST00000678904.1:ENST00000678910.1:ENST00000678101.1:ENST00000677105.1:ENST00000676813.1:ENST00000522367.6:ENST00000517947.5:ENST00000507878.7:ENST00000520006.2:ENST00000678369.1:ENST00000677433.1:ENST00000678564.1:ENST00000677252.1:ENST00000677369.1:ENST00000677284.1:ENST00000676894.1:ENST00000677923.1:ENST00000677323.1:ENST00000522666.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	79	2	1.96132	2.6863799999999998	3.41144	0.00701866	0.00178336	0.0754576	0.0379201
chr5	54046106	54046206	2618265	0	-	0.32	(0.28,0.32]	chr5	248835	1341	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	79	2	1.9021	2.6863599999999996	3.47062	0.0304779	0.00137212	0.130699	0.0340241
chrX	119603261	119603361	7873087	0	-	0.35	(0.32,0.35]	chrX	801775	4	SS5_PROX	SS5_PROX:INTRON	NKRF	ENSG00000186416.18	ENST00000304449.8:ENST00000542113.3:ENST00000688521.1	protein_coding	protein_coding	protein_coding	protein_coding	3	61	2	1.83416	2.68635	3.53854	0.0631198	9.09596e-4	0.176946	0.0277043
chr1	223994171	223994261	320936	0	+	0.388889	(0.378,0.408]	chr1	36964	8	INTRON	INTRON	SEPTIN7P13	ENSG00000185495.10	ENST00000622033.4:ENST00000618315.4	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	35	561	2	2.6649	2.6863099999999998	2.70772	2.1027e-5	2.37089e-6	0.00374829	9.72641e-4
chr1	65310438	65310537	136099	0	+	0.424242	(0.408,0.44]	chr1	15352	1	INTRON	INTRON	DNAJC6	ENSG00000116675.16	ENST00000463018.5:ENST00000494710.6:ENST00000263441.11:ENST00000395325.7:ENST00000483402.1:ENST00000371069.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	99	2	1.61376	2.68629	3.75882	0.0123659	4.04678e-4	0.0973643	0.0185763
chr7	128578218	128578303	3407828	0	+	0.364706	(0.35,0.378]	chr7	318345	2	SS5_PROX	SS5_PROX:INTRON	ENSG00000280828:ENSG00000242588	ENSG00000280828.1:ENSG00000242588.6	ENST00000479267.2:ENST00000605862.5	lncRNA	lncRNA	lncRNA:unprocessed_pseudogene	lncRNA:unprocessed_pseudogene	3	56	2	2.59046	2.68629	2.78212	0.0168532	0.00528327	0.103549	0.0656295
chr10	118310458	118310557	4703263	0	-	0.40404	(0.378,0.408]	chr10	433794	127	UTR3	UTR3:EXON_MRNA	FAM204A	ENSG00000165669.14	ENST00000369183.9:ENST00000467890.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	11	165	2	2.14429	2.68626	3.22823	0.00100501	1.00572e-4	0.0292285	0.00905982
chr21	17608173	17608272	7433042	0	-	0.363636	(0.35,0.378]	chr21	758033	28	INTRON	INTRON	BTG3	ENSG00000154640.15	ENST00000348354.7:ENST00000339775.10	protein_coding	protein_coding	protein_coding	protein_coding	6	88	2	1.47599	2.68626	3.89653	0.0425671	2.61932e-4	0.162011	0.0149313
chr16	71807400	71807500	6514464	0	-	0.35	(0.32,0.35]	chr16	631215	2	SS5_PROX	SS5_PROX:INTRON	AP1G1	ENSG00000166747.13	ENST00000299980.9:ENST00000569748.5:ENST00000393512.7:ENST00000565009.5:ENST00000568327.5:ENST00000450149.6:ENST00000563259.5:ENST00000563104.5:ENST00000569185.5:ENST00000566161.5:ENST00000567583.1:ENST00000565412.5:ENST00000569975.5:ENST00000570297.5:ENST00000570017.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	72	2	2.02133	2.686245	3.35116	0.017146	0.00283808	0.111072	0.0473151
chr1	6796228	6796328	5748	0	+	0.53	(0.515,0.57]	chr1	1124	103	INTRON	INTRON	CAMTA1	ENSG00000171735.19	ENST00000303635.12:ENST00000490738.5:ENST00000476163.5:ENST00000473578.5:ENST00000557126.5:ENST00000467404.6:ENST00000461311.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	45	2	1.9459	2.6861699999999997	3.42644	0.0429089	0.00106731	0.148082	0.0300133
chr22	21861023	21861123	7561320	0	-	0.47	(0.44,0.476]	chr22	773388	528	INTRON	INTRON	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	21	328	2	2.49358	2.686165	2.87875	7.96665e-5	6.42676e-6	0.00801397	0.00178626
chr3	9991783	9991880	1362018	0	+	0.453608	(0.44,0.476]	chr3	143392	27	INTRON	INTRON	EMC3-AS1	ENSG00000180385.9	ENST00000692142.1:ENST00000366264.6:ENST00000693066.1:ENST00000326237.3:ENST00000440568.1:ENST00000438698.1:ENST00000424904.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	5	83	2	2.35446	2.68614	3.01782	0.00536475	7.8136e-4	0.0642754	0.0257169
chr14	103390374	103390473	5825668	0	+	0.40404	(0.378,0.408]	chr14	552777	36	INTRON	INTRON	MARK3	ENSG00000075413.19	ENST00000678179.1:ENST00000676838.1:ENST00000677348.1:ENST00000677404.1:ENST00000676694.1:ENST00000676938.1:ENST00000678619.1:ENST00000676897.1:ENST00000677214.1:ENST00000677942.1:ENST00000676830.1:ENST00000678999.1:ENST00000677228.1:ENST00000556744.2:ENST00000677104.1:ENST00000679330.1:ENST00000560417.6:ENST00000440884.7:ENST00000676475.1:ENST00000677035.1:ENST00000678022.1:ENST00000677560.1:ENST00000561314.6:ENST00000429436.7:ENST00000677118.1:ENST00000676564.1:ENST00000678169.1:ENST00000678175.1:ENST00000678897.1:ENST00000678278.1:ENST00000676645.1:ENST00000677829.1:ENST00000678302.1:ENST00000677133.1:ENST00000561164.2:ENST00000558223.6:ENST00000559328.6:ENST00000678207.1:ENST00000677360.1:ENST00000676905.1:ENST00000678343.1:ENST00000677347.1:ENST00000678071.1:ENST00000677432.1:ENST00000678237.1:ENST00000677604.1:ENST00000676518.1:ENST00000677051.1:ENST00000677857.1:ENST00000677869.1:ENST00000678423.1:ENST00000560603.6:ENST00000416682.6:ENST00000303622.13:ENST00000216288.11:ENST00000679105.1:ENST00000553942.5:ENST00000335102.9:ENST00000561225.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	56	2	2.46373	2.68604	2.90835	0.0382831	0.00133715	0.141795	0.0335955
chr11	108099822	108099921	4856663	0	+	0.212121	[0,0.28]	chr11	452969	9	INTRON	INTRON	CUL5	ENSG00000166266.14	ENST00000393094.7:ENST00000531427.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	90	2	1.73226	2.686035	3.63981	0.0524108	8.51767e-4	0.160429	0.0264928
chr12	120553198	120553275	5235955	0	+	0.415584	(0.408,0.44]	chr12	496870	1	INTRON	INTRON	RNF10	ENSG00000022840.17	ENST00000325954.9:ENST00000542438.1:ENST00000538796.5:ENST00000413266.6:ENST00000551139.6:ENST00000536869.5:ENST00000543578.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	52	2	2.05947	2.68602	3.31257	0.0333232	0.00198621	0.134145	0.0411469
chr18	1281929	1282029	6940997	0	-	0.36	(0.35,0.378]	chr18	686573	27	INTRON	INTRON	LINC00470	ENSG00000132204.14	ENST00000657423.1:ENST00000657618.1:ENST00000584090.5:ENST00000660947.1:ENST00000669242.1:ENST00000660475.1:ENST00000653775.1:ENST00000661931.1:ENST00000412816.7:ENST00000577867.5:ENST00000584492.5:ENST00000667416.1:ENST00000661852.1:ENST00000657919.1:ENST00000661646.1:ENST00000667776.1:ENST00000654559.1:ENST00000661233.1:ENST00000653213.1:ENST00000659094.1:ENST00000660964.1:ENST00000577403.6:ENST00000660358.1:ENST00000669153.1:ENST00000657121.1:ENST00000655957.1:ENST00000659289.1:ENST00000665133.1:ENST00000671558.1:ENST00000666542.1:ENST00000663512.1:ENST00000582862.6:ENST00000578835.5:ENST00000669312.1:ENST00000581430.5:ENST00000581212.1	lncRNA	lncRNA	lncRNA	lncRNA	3	56	2	2.2877	2.6860049999999998	3.08431	0.0155765	0.0065853	0.109411	0.0701901
chr4	126610593	126610693	2236815	0	-	0.22	[0,0.28]	chr4	219023	1451	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	10	197	2	2.21482	2.6860049999999998	3.15719	0.00126861	0.00122973	0.0330485	0.0321419
chr3	47163127	47163227	1681596	0	-	0.5	(0.476,0.515]	chr3	171625	3	SS5_PROX	SS5_PROX:INTRON	SETD2	ENSG00000181555.22	ENST00000691544.1:ENST00000638947.2:ENST00000409792.4:ENST00000412450.1	protein_coding	protein_coding	protein_coding	protein_coding	14	212	2	2.47847	2.685975	2.89348	9.99005e-5	8.57887e-5	0.00843197	0.0083052
chr3	196074995	196075058	1897485	0	-	0.444444	(0.44,0.476]	chr3	189979	2	SS5_PROX	SS5_PROX:INTRON	TFRC	ENSG00000072274.13	ENST00000420415.5:ENST00000360110.9:ENST00000392396.7:ENST00000421258.1:ENST00000464011.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	44	662	2	2.67121	2.685895	2.70058	1.10538e-5	1.31986e-6	0.00263136	6.75843e-4
chr7	112459318	112459418	3381876	0	+	0.34	(0.32,0.35]	chr7	316788	3	SS5_PROX	SS5_PROX:INTRON	IFRD1	ENSG00000006652.15	ENST00000675578.1:ENST00000621379.4:ENST00000005558.8:ENST00000403825.8:ENST00000674915.1:ENST00000674887.1:ENST00000675041.1:ENST00000675717.1:ENST00000535603.5:ENST00000466459.5:ENST00000486688.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	154	2	1.77157	2.685835	3.6001	0.0193154	7.50831e-6	0.108861	0.00195296
chr2	107719946	107720046	1205749	0	-	0.51	(0.476,0.515]	chr2	128532	23	INTRON	INTRON	LINC01885:ENSG00000286769	ENSG00000237880.2:ENSG00000286769.1	ENST00000654481.1:ENST00000669817.1	lncRNA	lncRNA	lncRNA	lncRNA	3	51	2	2.32001	2.685765	3.05152	0.0136217	0.0064848	0.101682	0.0699952
chr10	86486932	86487031	4659014	0	-	0.353535	(0.35,0.378]	chr10	429282	126	INTRON	INTRON	WAPL	ENSG00000062650.20	ENST00000298767.10	protein_coding	protein_coding	protein_coding	protein_coding	4	68	2	1.92704	2.685695	3.44435	0.0228255	0.00179102	0.125469	0.0380316
chr3	198201001	198201100	1600173	0	+	0.363636	(0.35,0.378]	chr3	165898	16	INTRON	INTRON	FAM157A	ENSG00000236438.7	ENST00000634862.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	4	68	2	1.92704	2.685695	3.44435	0.0228255	0.00179102	0.125469	0.0380316
chr7	92259111	92259211	3352923	0	+	0.53	(0.515,0.57]	chr7	312479	122	INTRON	INTRON	ANKIB1	ENSG00000001629.10	ENST00000265742.8	protein_coding	protein_coding	protein_coding	protein_coding	6	85	2	2.60978	2.685635	2.7614899999999998	0.00151689	6.09302e-4	0.0352794	0.0223951
chr3	6532530	6532630	1356566	0	+	0.32	(0.28,0.32]	chr3	142508	194	INTRON	INTRON	ENSG00000189229	ENSG00000189229.12	ENST00000660158.1:ENST00000433639.1:ENST00000655754.1:ENST00000653839.1:ENST00000662846.1:ENST00000659876.1:ENST00000414438.2:ENST00000658468.1:ENST00000414603.1:ENST00000669512.1:ENST00000667028.1:ENST00000655541.1:ENST00000668643.1:ENST00000671568.1:ENST00000671036.1:ENST00000669798.1:ENST00000655753.1:ENST00000655856.1:ENST00000658398.1:ENST00000661518.1:ENST00000661279.1:ENST00000655495.1:ENST00000663041.1:ENST00000659827.1:ENST00000667716.1:ENST00000662508.1:ENST00000668416.1:ENST00000658133.1:ENST00000659651.1:ENST00000342990.4:ENST00000660054.1:ENST00000671370.1	lncRNA	lncRNA	lncRNA	lncRNA	7	146	2	2.58813	2.6855599999999997	2.78299	0.00136257	9.04617e-4	0.0336321	0.0276086
chr19	14517391	14517478	7144785	0	-	0.321839	(0.32,0.35]	chr19	721455	5	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DNAJB1	ENSG00000132002.9	ENST00000594099.6:ENST00000596075.2:ENST00000678009.1:ENST00000677848.1:ENST00000596853.6:ENST00000254322.3:ENST00000676577.1:ENST00000676515.1:ENST00000598692.2:ENST00000677762.1:ENST00000678338.1:ENST00000595139.2:ENST00000598235.2:ENST00000601533.6:ENST00000677204.1:ENST00000679223.1:ENST00000676982.1:ENST00000678098.1:ENST00000396969.8:ENST00000595992.6	protein_coding	protein_coding	protein_coding	protein_coding	7	135	2	2.46576	2.685505	2.90525	0.00423072	1.48831e-4	0.0572185	0.0105921
chr3	185935724	185935824	1886581	0	-	0.43	(0.408,0.44]	chr3	188644	14	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	TRA2B	ENSG00000136527.19	ENST00000453386.7:ENST00000487615.5:ENST00000456380.5:ENST00000382191.4:ENST00000465245.1:ENST00000485530.5:ENST00000471134.1:ENST00000480461.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	86	2	2.22268	2.685495	3.14831	0.00770925	5.86664e-4	0.0784002	0.022457
chr7	128820515	128820613	3409053	0	+	0.336735	(0.32,0.35]	chr7	318563	23	INTRON	INTRON	CCDC136	ENSG00000128596.17	ENST00000378685.8:ENST00000464832.5:ENST00000297788.9:ENST00000487361.5:ENST00000480137.1:ENST00000494552.5:ENST00000464672.1:ENST00000471729.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	64	2	1.88468	2.68544	3.4862	0.0515071	0.001711	0.176696	0.037419
chr6	15389140	15389239	2824379	0	+	0.333333	(0.32,0.35]	chr6	265198	145	INTRON	INTRON	JARID2	ENSG00000008083.14	ENST00000341776.7:ENST00000397311.4	protein_coding	protein_coding	protein_coding	protein_coding	7	123	2	2.2751	2.68534	3.09558	0.0019529	9.89544e-4	0.0411469	0.0287967
chr19	15331435	15331535	7147395	0	-	0.61	(0.57,1]	chr19	721966	2	SS5_PROX	SS5_PROX:INTRON	BRD4	ENSG00000141867.19	ENST00000679869.1:ENST00000360016.9:ENST00000594841.5:ENST00000597315.5:ENST00000601941.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	50	2	2.50164	2.68528	2.86892	0.00125753	8.10609e-4	0.0323608	0.0259609
chr17	50740523	50740601	6627187	0	+	0.410256	(0.408,0.44]	chr17	647208	2	SS5_PROX	SS5_PROX:INTRON	LUC7L3	ENSG00000108848.16	ENST00000508045.5:ENST00000508218.5:ENST00000509335.5:ENST00000393227.6:ENST00000504563.6:ENST00000505658.6:ENST00000240304.5:ENST00000508482.5:ENST00000505619.5:ENST00000510984.5:ENST00000507200.5:ENST00000513025.2:ENST00000507503.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	70	2	2.64829	2.6851849999999997	2.72208	0.00400062	0.00364449	0.057767	0.0535094
chr12	122581452	122581546	5241161	0	+	0.531915	(0.515,0.57]	chr12	497747	4	INTRON	INTRON	KNTC1	ENSG00000184445.12	ENST00000450485.6:ENST00000333479.12	protein_coding	protein_coding	protein_coding	protein_coding	3	46	2	2.53845	2.685165	2.83188	0.0108207	0.00632226	0.0920575	0.0687526
chr14	102779272	102779372	5823947	0	+	0.31	(0.28,0.32]	chr14	552554	12	INTRON	INTRON	TRAF3	ENSG00000131323.16	ENST00000392745.8:ENST00000560371.5:ENST00000347662.8:ENST00000539721.5:ENST00000560463.5	protein_coding	protein_coding	protein_coding	protein_coding	5	111	2	2.14534	2.685165	3.22499	0.0117054	6.82828e-4	0.0962115	0.0239239
chr6	87223741	87223838	2913947	0	+	0.453608	(0.44,0.476]	chr6	275310	11	EXON_LNCRNA	EXON_LNCRNA:INTRON	ZNF292	ENSG00000188994.13	ENST00000369577.8:ENST00000369578.6:ENST00000518845.1:ENST00000339907.8:ENST00000496806.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	83	2	2.42643	2.68508	2.94373	0.0033369	0.00143431	0.0528877	0.0340925
chr1	223805247	223805347	642963	0	-	0.31	(0.28,0.32]	chr1	75925	5	INTRON	INTRON	TP53BP2	ENSG00000143514.17	ENST00000343537.12:ENST00000391878.6:ENST00000494100.1:ENST00000496282.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	110	2	1.96974	2.685075	3.40041	0.0055925	0.00273088	0.0678837	0.0467642
chr7	152091192	152091292	3450171	0	+	0.38	(0.378,0.408]	chr7	322451	114	INTRON	INTRON	GALNT11	ENSG00000178234.13	ENST00000430044.7:ENST00000482812.1:ENST00000431668.1:ENST00000446096.5:ENST00000447778.5:ENST00000423337.5:ENST00000434507.5:ENST00000415421.5:ENST00000422997.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	73	2	1.9714	2.68506	3.39872	0.0109363	0.0019852	0.0924799	0.0404516
chr1	33013681	33013775	416616	0	-	0.404255	(0.378,0.408]	chr1	50323	4	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	AK2	ENSG00000004455.18	ENST00000373449.7:ENST00000672715.1:ENST00000695598.1:ENST00000550338.6:ENST00000695599.1:ENST00000354858.11:ENST00000695600.1:ENST00000695601.1:ENST00000491241.2:ENST00000695602.1:ENST00000469238.2:ENST00000695603.1:ENST00000695604.1:ENST00000672308.1:ENST00000548033.5:ENST00000467905.5:ENST00000480134.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	42	2	2.36428	2.68498	3.00568	0.0441088	0.00811866	0.162255	0.0766625
chr10	74001268	74001368	4454532	0	+	0.33	(0.32,0.35]	chr10	411385	25	INTRON	INTRON	VCL	ENSG00000035403.18	ENST00000623461.3:ENST00000372755.7:ENST00000624354.3:ENST00000211998.10:ENST00000478896.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	73	2	1.99785	2.684975	3.3721	0.0215554	0.00182912	0.114686	0.0396683
chr20	47502618	47502718	7281004	0	+	0.36	(0.35,0.378]	chr20	740469	2	INTRON	INTRON	NCOA3	ENSG00000124151.19	ENST00000371998.8:ENST00000372004.7:ENST00000371997.3	protein_coding	protein_coding	protein_coding	protein_coding	8	101	2	1.79033	2.684885	3.57944	0.0077887	0.0010429	0.0787356	0.0293983
chr6	143182171	143182271	2976401	0	+	0.4	(0.378,0.408]	chr6	279149	166	INTRON	INTRON	AIG1	ENSG00000146416.19	ENST00000367601.8:ENST00000447498.5:ENST00000646199.1:ENST00000357847.9:ENST00000629020.2:ENST00000275235.8:ENST00000494282.6:ENST00000458219.1:ENST00000470265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	54	2	2.17608	2.6848799999999997	3.19368	0.0218783	0.00426861	0.123836	0.0573912
chr10	119063313	119063412	4704746	0	-	0.323232	(0.32,0.35]	chr10	433984	16	INTRON	INTRON	EIF3A	ENSG00000107581.13	ENST00000369144.8:ENST00000541549.2	protein_coding	protein_coding	protein_coding	protein_coding	3	60	2	2.04237	2.684835	3.3273	0.0375542	0.00218894	0.140222	0.0435144
chr1	2233567	2233666	2218	0	+	0.636364	(0.57,1]	chr1	553	5	INTRON	INTRON	SKI	ENSG00000157933.10	ENST00000378536.5:ENST00000508416.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	28	2	2.23711	2.684825	3.13254	0.0172108	0.00310655	0.104099	0.0512344
chr1	40378197	40378297	81488	0	+	0.6	(0.57,1]	chr1	10553	31	INTRON	INTRON	SMAP2	ENSG00000084070.12	ENST00000435168.6:ENST00000372718.8:ENST00000372708.5	protein_coding	protein_coding	protein_coding	protein_coding	3	28	2	2.23711	2.684825	3.13254	0.0172108	0.00310655	0.104099	0.0512344
chr17	76636601	76636701	6843599	0	-	0.72	(0.57,1]	chr17	676980	24	INTRON	INTRON	ST6GALNAC1	ENSG00000070526.15	ENST00000592042.5:ENST00000156626.12:ENST00000359088.9:ENST00000590878.1:ENST00000589813.5:ENST00000590915.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	28	2	2.23711	2.684825	3.13254	0.0172108	0.00310655	0.104099	0.0512344
chr8	67122987	67123087	3777240	0	+	0.52	(0.515,0.57]	chr8	350359	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	CSPP1	ENSG00000104218.16	ENST00000676113.1:ENST00000675306.2:ENST00000678156.1:ENST00000262210.11:ENST00000678017.1:ENST00000675869.1:ENST00000678542.1:ENST00000677619.1:ENST00000676605.1:ENST00000676471.1:ENST00000677256.1:ENST00000676847.1:ENST00000677009.1:ENST00000675820.1:ENST00000676317.1:ENST00000677592.1:ENST00000676573.1:ENST00000678318.1:ENST00000677473.1:ENST00000674993.1:ENST00000678553.1:ENST00000679226.1:ENST00000676882.1:ENST00000675955.1:ENST00000678728.1:ENST00000677430.1:ENST00000677455.1:ENST00000678616.1:ENST00000678362.1:ENST00000679112.1:ENST00000678645.1:ENST00000676567.1:ENST00000677845.1:ENST00000519163.6:ENST00000676858.1:ENST00000678747.1:ENST00000519668.1:ENST00000676697.1:ENST00000678216.1:ENST00000677855.1:ENST00000676695.1:ENST00000677836.1:ENST00000677070.1:ENST00000678444.1:ENST00000676534.1:ENST00000678138.1:ENST00000678807.1:ENST00000677052.1:ENST00000679274.1:ENST00000679042.1:ENST00000678345.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	45	2	2.68132	2.684825	2.68833	0.0184931	0.00324198	0.108861	0.0524329
chr1	224951371	224951471	322569	0	+	0.36	(0.35,0.378]	chr1	37105	212	INTRON	INTRON	DNAH14	ENSG00000185842.16	ENST00000445597.6:ENST00000430092.5:ENST00000366850.7:ENST00000400952.7:ENST00000682510.1:ENST00000366849.5:ENST00000498360.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	161	2	1.66648	2.68482	3.70316	0.00721908	4.47101e-5	0.0756327	0.00576309
chr5	98922144	98922244	2684006	0	-	0.34	(0.32,0.35]	chr5	253957	167	INTRON	INTRON	CHD1	ENSG00000153922.11	ENST00000614616.5:ENST00000284049.7	protein_coding	protein_coding	protein_coding	protein_coding	5	97	2	2.2214	2.6846449999999997	3.14789	0.0103516	5.00642e-4	0.085045	0.020217099999999998
chr1	29060321	29060421	60432	0	+	0.29	(0.28,0.32]	chr1	7722	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000647918.1:ENST00000646800.1:ENST00000644342.1:ENST00000646189.1:ENST00000482464.6:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000646260.1:ENST00000373798.5:ENST00000644600.1:ENST00000649674.1:ENST00000643173.1:ENST00000343067.9:ENST00000644780.1:ENST00000650265.1:ENST00000648181.1:ENST00000643604.1:ENST00000648891.1:ENST00000373797.2:ENST00000349460.9:ENST00000645184.1:ENST00000645111.1:ENST00000643302.1:ENST00000642643.1:ENST00000636666.1:ENST00000644848.1:ENST00000644470.1:ENST00000646871.1:ENST00000488277.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	16	312	2	2.67831	2.684595	2.69088	5.71317e-4	2.90284e-5	0.0220865	0.00427684
chr1	167547901	167548001	576982	0	-	0.38	(0.378,0.408]	chr1	69959	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	CREG1	ENSG00000143162.9	ENST00000466652.2:ENST00000370509.5	protein_coding	protein_coding	protein_coding	protein_coding	4	65	2	1.68393	2.6845499999999998	3.68517	0.0503034	3.90172e-4	0.156383	0.0177751
chr1	86875178	86875278	498720	0	-	0.42	(0.408,0.44]	chr1	59184	67	INTRON	INTRON	SELENOF	ENSG00000183291.18	ENST00000331835.10:ENST00000370554.5:ENST00000648872.1:ENST00000469566.5:ENST00000401030.4:ENST00000497861.5:ENST00000467557.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	86	2	1.61024	2.68453	3.75882	0.0200746	4.04678e-4	0.121073	0.0185763
chr1	45640998	45641094	440120	0	-	0.354167	(0.35,0.378]	chr1	53325	2	INTRON	INTRON	GPBP1L1	ENSG00000159592.11	ENST00000290795.7:ENST00000355105.8	protein_coding	protein_coding	protein_coding	protein_coding	4	69	2	2.10109	2.684515	3.26794	0.014685	0.00257067	0.0983813	0.0466761
chr11	14650151	14650251	4743680	0	+	0.39	(0.378,0.408]	chr11	439279	47	INTRON	INTRON	PDE3B	ENSG00000152270.9	ENST00000282096.9:ENST00000455098.2:ENST00000534317.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	26	421	2	2.09233	2.68444	3.27655	6.17845e-4	1.65062e-7	0.0229151	1.8594e-4
chr15	65878991	65879080	6048666	0	+	0.47191	(0.44,0.476]	chr15	575911	7	INTRON	INTRON	RAB11A	ENSG00000103769.10	ENST00000569304.1:ENST00000564910.5:ENST00000566233.5:ENST00000261890.7:ENST00000565075.5:ENST00000569896.1:ENST00000567671.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	52	2	2.67572	2.684345	2.69297	0.0212064	0.00333494	0.113017	0.0528877
chr19	1853280	1853378	7113842	0	-	0.581633	(0.57,1]	chr19	714897	10	UTR3	UTR3:EXON_MRNA:INTRON	KLF16	ENSG00000129911.9	ENST00000250916.6:ENST00000541015.5:ENST00000617223.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	45	2	2.6547	2.684305	2.71391	0.00346848	6.82348e-4	0.0539802	0.0239168
chr3	5174914	5175012	1354110	0	+	0.540816	(0.515,0.57]	chr3	142391	1	INTRON	INTRON	ARL8B	ENSG00000134108.14	ENST00000256496.8:ENST00000455168.5:ENST00000419534.2:ENST00000468010.1:ENST00000476343.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	59	2	2.53845	2.684195	2.82994	0.00632226	0.00168661	0.0687526	0.0381778
chr2	171539723	171539823	917499	0	+	0.52	(0.515,0.57]	chr2	101032	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	CYBRD1	ENSG00000071967.12	ENST00000409484.5:ENST00000468308.1:ENST00000321348.9:ENST00000375252.3:ENST00000474182.1:ENST00000494587.1:ENST00000445146.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	98	2	2.16301	2.68414	3.20527	0.00510122	4.73488e-5	0.0626075	0.00562068
chr16	21968127	21968210	6319695	0	+	0.481928	(0.476,0.515]	chr16	604993	1	SS3_PROX	SS3_PROX:INTRON	UQCRC2	ENSG00000140740.11	ENST00000268379.9:ENST00000561553.5:ENST00000563898.5:ENST00000563711.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	84	2	2.25138	2.6839250000000003	3.11647	0.00692374	6.41912e-4	0.0753208	0.0231685
chr6	63655776	63655876	2883490	0	+	0.42	(0.408,0.44]	chr6	273559	86	INTRON	INTRON	PHF3	ENSG00000118482.12	ENST00000262043.8:ENST00000506783.5:ENST00000481385.6:ENST00000515594.5:ENST00000494284.6:ENST00000509876.5:ENST00000509330.5:ENST00000393387.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	105	2	1.27904	2.6838	4.08856	0.0379268	8.21424e-5	0.157212	0.00812487
chr8	26310712	26310812	3716288	0	+	0.41	(0.408,0.44]	chr8	345372	57	INTRON	INTRON	PPP2R2A	ENSG00000221914.11	ENST00000380737.8:ENST00000520329.5:ENST00000518254.5:ENST00000524169.5:ENST00000518397.5:ENST00000522535.5:ENST00000665949.1:ENST00000522150.5:ENST00000523473.5:ENST00000521095.5:ENST00000660435.1:ENST00000523925.5:ENST00000524099.5:ENST00000315985.7:ENST00000519636.5:ENST00000522482.5:ENST00000521557.5:ENST00000519439.5:ENST00000521484.5:ENST00000523964.5:ENST00000667651.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	52	2	2.64829	2.6837	2.71911	0.0189489	0.00400062	0.108861	0.057767
chr12	132757926	132758025	5449542	0	-	0.444444	(0.44,0.476]	chr12	521956	29	EXON_MRNA	EXON_MRNA:INTRON	ANKLE2	ENSG00000176915.15	ENST00000357997.10:ENST00000539605.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	78	2	1.82106	2.68369	3.54632	0.0124107	9.9951e-4	0.0973643	0.0288906
chr22	42969874	42969974	7597899	0	-	0.37	(0.35,0.378]	chr22	778194	101	INTRON	INTRON	PACSIN2	ENSG00000100266.19	ENST00000263246.8:ENST00000453643.5:ENST00000422336.5:ENST00000445706.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	68	2	1.95579	2.6835899999999997	3.41139	0.0234538	0.00143263	0.11867	0.0347139
chr5	62316374	62316474	2362134	0	+	0.37	(0.35,0.378]	chr5	227725	41	INTRON	INTRON	KIF2A	ENSG00000068796.19	ENST00000401507.7:ENST00000407818.8:ENST00000674632.1:ENST00000674916.1:ENST00000676413.1:ENST00000676122.1:ENST00000674751.1:ENST00000514082.6:ENST00000675085.1:ENST00000504883.2:ENST00000381103.7:ENST00000676271.1:ENST00000512541.5:ENST00000674733.1:ENST00000506857.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	93	2	2.4077	2.68358	2.95946	0.0122026	2.74603e-4	0.0910127	0.0147777
chr7	152288075	152288175	3679803	0	-	0.24	[0,0.28]	chr7	341623	13	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000684262.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	55	2	2.27119	2.68353	3.09587	0.070351	0.00651565	0.184298	0.0735232
chr12	110291619	110291719	5226202	0	+	0.44	(0.408,0.44]	chr12	495235	2	SS3_PROX	SS3_PROX:INTRON	ATP2A2	ENSG00000174437.18	ENST00000552636.2:ENST00000308664.10:ENST00000539276.7:ENST00000377685.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	19	252	2	2.2222	2.683515	3.14483	1.34813e-4	4.92125e-5	0.0100214	0.00608708
chr14	103342144	103342243	5825587	0	+	0.292929	(0.28,0.32]	chr14	552769	12	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	EIF5	ENSG00000100664.11	ENST00000216554.8:ENST00000392715.6:ENST00000558506.1:ENST00000561406.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	204	2	1.80033	2.683515	3.5667	0.00956835	1.23004e-5	0.0820838	0.00261354
chr20	47356414	47356485	7349517	0	-	0.535211	(0.515,0.57]	chr20	749374	1	SS5_PROX	SS5_PROX:INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000458360.6:ENST00000262975.8:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000435836.5	protein_coding	protein_coding	protein_coding	protein_coding	5	72	2	2.27116	2.6834800000000003	3.0958	0.00601759	5.63557e-4	0.0700813	0.0219303
chr2	20249488	20249588	1075743	0	-	0.36	(0.35,0.378]	chr2	114915	9	UTR3	UTR3:EXON_MRNA	PUM2	ENSG00000055917.16	ENST00000338086.9:ENST00000361078.7	protein_coding	protein_coding	protein_coding	protein_coding	5	77	2	2.15229	2.6834249999999997	3.21456	0.00545124	0.00420814	0.0669407	0.0572185
chr13	52168905	52169004	5597234	0	-	0.414141	(0.408,0.44]	chr13	535080	13	EXON_LNCRNA	EXON_LNCRNA	ENSG00000217576:MRPS31P5	ENSG00000217576.7:ENSG00000243406.6	ENST00000451298.1:ENST00000416599.5	lncRNA	lncRNA	lncRNA:transcribed_unprocessed_pseudogene	lncRNA:processed_transcript	8	127	2	2.57162	2.68336	2.7951	8.18693e-4	3.50541e-4	0.0264086	0.0166929
chr2	110662189	110662289	1206702	0	-	0.3	(0.28,0.32]	chr2	128693	2	SS3_PROX	SS3_PROX:INTRON	BUB1	ENSG00000169679.15	ENST00000302759.11:ENST00000535254.6:ENST00000409311.5:ENST00000466333.5:ENST00000666956.1:ENST00000465029.5:ENST00000477481.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	107	2	2.45547	2.6833549999999997	2.91124	0.00495986	0.00165124	0.0615009	0.0375241
chr9	137638222	137638321	4223665	0	+	0.494949	(0.476,0.515]	chr9	388158	2	INTRON	INTRON	EHMT1	ENSG00000181090.21	ENST00000462484.5:ENST00000371394.6:ENST00000630754.2:ENST00000460843.6:ENST00000626216.2:ENST00000637593.1:ENST00000629335.2:ENST00000637335.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	83	2	2.47496	2.683305	2.89165	0.00323541	0.00142068	0.0507251	0.034662
chr1	52845671	52845771	104935	0	+	0.32	(0.28,0.32]	chr1	13720	23	INTRON	INTRON	ZYG11A	ENSG00000203995.10	ENST00000371532.5:ENST00000612017.4:ENST00000371528.2	protein_coding	protein_coding	protein_coding	protein_coding	2	48	2	2.62686	2.683155	2.73945	0.0289217	0.017681	0.1274	0.11319
chr19	29978468	29978567	7047918	0	+	0.30303	(0.28,0.32]	chr19	702669	69	INTRON	INTRON	URI1	ENSG00000105176.18	ENST00000360605.8:ENST00000570564.5:ENST00000574233.5:ENST00000392271.6:ENST00000574110.5:ENST00000574666.5:ENST00000576442.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	48	2	2.62686	2.683155	2.73945	0.0289217	0.017681	0.1274	0.11319
chr14	81265022	81265122	5935961	0	-	0.26	[0,0.28]	chr14	564180	32	UTR3	UTR3:EXON_MRNA:INTRON	STON2	ENSG00000140022.14	ENST00000553821.3:ENST00000614646.5:ENST00000555447.5:ENST00000649389.1	protein_coding	protein_coding	protein_coding	protein_coding	2	55	2	2.63238	2.68311	2.73384	0.0259691	0.0246308	0.133676	0.12011
chr7	76560917	76561017	3340477	0	+	0.18	[0,0.28]	chr7	311170	90	INTRON	INTRON	ENSG00000205485	ENSG00000205485.13	ENST00000418663.5:ENST00000450661.1:ENST00000423084.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	2	55	2	2.63238	2.68311	2.73384	0.0259691	0.0246308	0.133676	0.12011
chr7	119845539	119845639	3629796	0	-	0.31	(0.28,0.32]	chr7	337335	443	INTRON	INTRON	LINC02476	ENSG00000225546.6	ENST00000660268.1:ENST00000431071.5:ENST00000426413.2	lncRNA	lncRNA	lncRNA	lncRNA	7	134	2	2.26355	2.683085	3.10262	0.00229405	0.00114045	0.0439319	0.0307966
chr17	17261692	17261792	6736237	0	-	0.33	(0.32,0.35]	chr17	660970	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	COPS3	ENSG00000141030.13	ENST00000268717.10:ENST00000539941.6:ENST00000578317.5:ENST00000439936.6:ENST00000486810.5:ENST00000577210.5:ENST00000417352.5:ENST00000584216.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	137	2	2.00297	2.68307	3.36317	0.00606785	1.69213e-4	0.0676501	0.0112853
chr1	246582339	246582439	350142	0	+	0.56	(0.515,0.57]	chr1	40488	152	INTRON	INTRON	CNST	ENSG00000162852.14	ENST00000483271.1:ENST00000366513.9:ENST00000366512.7:ENST00000366511.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	75	2	1.64662	2.68302	3.71942	0.0178544	2.61221e-4	0.106151	0.014326
chr1	230258207	230258306	335999	0	+	0.444444	(0.44,0.476]	chr1	38988	24	INTRON	INTRON	GALNT2	ENSG00000143641.10	ENST00000366672.5:ENST00000485438.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	69	2	2.67282	2.6828950000000003	2.69297	0.00433875	0.00333494	0.0579868	0.0528877
chr14	27600437	27600537	5848856	0	-	0.48	(0.476,0.515]	chr14	556260	2779	INTRON	INTRON	ENSG00000258932	ENSG00000258932.5	ENST00000553392.5:ENST00000554904.5:ENST00000556890.1:ENST00000555797.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	2	39	2	2.47949	2.6828950000000003	2.8863	0.0326974	0.0111679	0.145164	0.0877435
chr16	16555098	16555198	6311413	0	+	0.49	(0.476,0.515]	chr16	604098	551	INTRON	INTRON	ENSG00000260126	ENSG00000260126.2	ENST00000567465.2	lncRNA	lncRNA	lncRNA	lncRNA	2	39	2	2.47949	2.6828950000000003	2.8863	0.0326974	0.0111679	0.145164	0.0877435
chr5	32262413	32262512	2597886	0	-	0.515152	(0.476,0.515]	chr5	246812	63	INTRON	INTRON	MTMR12	ENSG00000150712.11	ENST00000280285.9:ENST00000382142.8:ENST00000264934.5	protein_coding	protein_coding	protein_coding	protein_coding	2	39	2	2.47949	2.6828950000000003	2.8863	0.0326974	0.0111679	0.145164	0.0877435
chr5	54071728	54071827	2618523	0	-	0.484848	(0.476,0.515]	chr5	248837	236	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	39	2	2.47949	2.6828950000000003	2.8863	0.0326974	0.0111679	0.145164	0.0877435
chr19	32655639	32655739	7169428	0	-	0.53	(0.515,0.57]	chr19	724470	55	INTRON	INTRON	ANKRD27	ENSG00000105186.16	ENST00000306065.9:ENST00000587352.5:ENST00000586463.5:ENST00000588700.5:ENST00000586693.7:ENST00000590519.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	34	2	2.23915	2.68289	3.12663	0.0596178	0.00374498	0.16883600000000001	0.0562234
chr3	146526944	146527044	1839128	0	-	0.53	(0.515,0.57]	chr3	185006	9	INTRON	INTRON	PLSCR1	ENSG00000188313.13	ENST00000342435.9:ENST00000493432.5:ENST00000463777.5:ENST00000487389.5:ENST00000468985.5:ENST00000448787.6:ENST00000488253.5:ENST00000489775.5:ENST00000483300.5:ENST00000478267.5:ENST00000462666.5:ENST00000486631.5:ENST00000472349.1:ENST00000494568.5:ENST00000490745.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	34	2	2.23915	2.68289	3.12663	0.0596178	0.00374498	0.16883600000000001	0.0562234
chr1	154623964	154624063	559347	0	-	0.424242	(0.408,0.44]	chr1	66491	153	INTRON	INTRON	ADAR	ENSG00000160710.18	ENST00000681056.1:ENST00000680270.1:ENST00000679375.1:ENST00000679899.1:ENST00000368471.8:ENST00000649022.2:ENST00000679805.1:ENST00000649042.1:ENST00000649724.1:ENST00000648311.1:ENST00000649021.1:ENST00000681683.1:ENST00000463920.5:ENST00000680472.1:ENST00000471068.2:ENST00000494866.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	52	2	2.21857	2.682815	3.14706	0.0209591	0.00382411	0.112046	0.0562562
chr9	131397557	131397656	4217004	0	+	0.343434	(0.32,0.35]	chr9	386720	29	INTRON	INTRON	PRRC2B	ENSG00000288701.1	ENST00000682525.1:ENST00000684596.1:ENST00000683519.1:ENST00000682501.1	protein_coding	protein_coding	protein_coding	protein_coding	5	97	2	2.30754	2.68281	3.05808	0.0076357	7.67153e-4	0.075226	0.0254532
chr10	47535479	47535578	4609298	0	-	0.272727	[0,0.28]	chr10	424641	116	INTRON	INTRON	ENSG00000254929	ENSG00000254929.6	ENST00000605970.5:ENST00000431840.2	lncRNA	lncRNA	lncRNA	lncRNA	2	56	2	2.5055	2.68279	2.86008	0.0359431	0.0177015	0.152322	0.105304
chr13	28147883	28147983	5460922	0	+	0.27	[0,0.28]	chr13	523235	84	INTRON	INTRON	PAN3	ENSG00000152520.14	ENST00000503791.5:ENST00000380958.8:ENST00000399613.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	76	2	2.54624	2.68277	2.8193	0.0388449	0.00285248	0.143072	0.0494641
chr8	26312410	26312510	3716305	0	+	0.44	(0.408,0.44]	chr8	345372	74	INTRON	INTRON	PPP2R2A	ENSG00000221914.11	ENST00000380737.8:ENST00000520329.5:ENST00000518254.5:ENST00000524169.5:ENST00000518397.5:ENST00000522535.5:ENST00000665949.1:ENST00000522150.5:ENST00000523473.5:ENST00000521095.5:ENST00000660435.1:ENST00000523925.5:ENST00000524099.5:ENST00000315985.7:ENST00000519636.5:ENST00000522482.5:ENST00000521557.5:ENST00000519439.5:ENST00000521484.5:ENST00000523964.5:ENST00000667651.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	62	2	2.30838	2.682715	3.05705	0.00658331	0.00547703	0.0701901	0.0671198
chr10	14934279	14934379	4561694	0	-	0.39	(0.378,0.408]	chr10	420982	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	DCLRE1C	ENSG00000152457.18	ENST00000378289.8:ENST00000378278.7:ENST00000378246.6:ENST00000357717.6:ENST00000378258.5:ENST00000378249.5:ENST00000396817.6:ENST00000378255.5:ENST00000378254.5:ENST00000418843.5	protein_coding	protein_coding	protein_coding	protein_coding	2	43	2	2.26252	2.6826299999999996	3.10274	0.056222	0.00586642	0.18407	0.0668095
chr14	92123048	92123147	5806840	0	+	0.383838	(0.378,0.408]	chr14	550314	3	INTRON	INTRON	CPSF2	ENSG00000165934.13	ENST00000298875.9:ENST00000553427.5:ENST00000554290.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	43	2	2.26252	2.6826299999999996	3.10274	0.056222	0.00586642	0.18407	0.0668095
chr14	102721686	102721781	5823836	0	+	0.4	(0.378,0.408]	chr14	552539	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RCOR1	ENSG00000089902.10	ENST00000262241.7:ENST00000560472.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	53	2	2.46345	2.6825349999999997	2.90162	0.0113157	0.00827342	0.0886121	0.0813266
chr5	32168051	32168151	2597453	0	-	0.21	[0,0.28]	chr5	246744	238	INTRON	INTRON	GOLPH3	ENSG00000113384.14	ENST00000265070.7:ENST00000503610.5:ENST00000512668.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	100	2	2.48772	2.6825099999999997	2.8773	0.0125761	0.00226728	0.0926667	0.0437013
chr11	47726027	47726123	4950983	0	-	0.385417	(0.378,0.408]	chr11	464381	14	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	FNBP4	ENSG00000109920.13	ENST00000263773.10:ENST00000530207.1:ENST00000525792.5:ENST00000531394.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	11	145	2	1.94379	2.6824649999999997	3.42114	0.00220008	1.6916e-4	0.0435144	0.0119421
chr16	18064208	18064308	6453275	0	-	0.35	(0.32,0.35]	chr16	621960	604	INTRON	INTRON	ENSG00000259929:ENSG00000260242	ENSG00000259929.5:ENSG00000260242.1	ENST00000567304.1:ENST00000563866.1	lncRNA	lncRNA	lncRNA	lncRNA	3	60	2	2.18092	2.68242	3.18392	0.0256608	0.00379806	0.120491	0.0562562
chr6	83179309	83179409	3145733	0	-	0.22	[0,0.28]	chr6	293285	1	SS5_PROX	SS5_PROX:INTRON	PGM3	ENSG00000013375.16	ENST00000513973.6:ENST00000512866.5:ENST00000650640.1:ENST00000616566.5:ENST00000283977.9:ENST00000651425.1:ENST00000651698.1:ENST00000650642.1:ENST00000651204.1:ENST00000652222.1:ENST00000506587.5:ENST00000509219.2:ENST00000652468.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	113	2	1.86436	2.68234	3.50032	0.0134322	0.00245166	0.101281	0.0446188
chr8	42275989	42276089	3742986	0	+	0.51	(0.476,0.515]	chr8	348064	34	INTRON	INTRON	IKBKB	ENSG00000104365.16	ENST00000520810.6:ENST00000629753.2:ENST00000517890.5:ENST00000520835.7:ENST00000523105.5:ENST00000519735.5:ENST00000519733.5:ENST00000518679.5:ENST00000517917.5:ENST00000342222.6:ENST00000520201.5:ENST00000518647.5:ENST00000517388.5:ENST00000521661.5:ENST00000520655.5:ENST00000517812.5:ENST00000522147.4:ENST00000523517.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	63	2	2.17347	2.6823300000000003	3.19119	0.010447	0.00325748	0.0855102	0.0524329
chrX	9525893	9525993	7619263	0	+	0.47	(0.44,0.476]	chrX	779944	237	INTRON	INTRON	TBL1X	ENSG00000101849.18	ENST00000407597.7:ENST00000380961.5:ENST00000424279.6:ENST00000645353.2:ENST00000422314.5	protein_coding	protein_coding	protein_coding	protein_coding	3	51	2	2.44514	2.68232	2.9195	0.0102021	0.0087381	0.0850389	0.0845538
chrX	41113180	41113280	7644339	0	+	0.45	(0.44,0.476]	chrX	782230	267	INTRON	INTRON	USP9X	ENSG00000124486.14	ENST00000324545.9:ENST00000378308.7	protein_coding	protein_coding	protein_coding	protein_coding	3	51	2	2.44514	2.68232	2.9195	0.0102021	0.0087381	0.0850389	0.0845538
chr2	112646928	112647006	852067	0	+	0.5	(0.476,0.515]	chr2	95562	1	CDS	CDS:EXON_MRNA	SLC20A1	ENSG00000144136.11	ENST00000272542.8	protein_coding	protein_coding	protein_coding	protein_coding	9	147	2	2.3472	2.682315	3.01743	0.00117711	9.21054e-5	0.031662	0.00853581
chr6	35880930	35881030	3088415	0	-	0.38	(0.378,0.408]	chr6	288860	62	INTRON	INTRON	SRPK1	ENSG00000096063.16	ENST00000373825.7:ENST00000423325.6:ENST00000346162.10:ENST00000361690.7:ENST00000510290.5:ENST00000373821.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	55	2	1.76032	2.6823050000000004	3.60429	0.0721577	5.71664e-4	0.187433	0.0217398
chr1	31908559	31908656	414125	0	-	0.319588	(0.28,0.32]	chr1	49867	23	UTR3	UTR3:EXON_MRNA:INTRON	ENSG00000269967:PTP4A2	ENSG00000269967.1:ENSG00000184007.22	ENST00000602889.1:ENST00000647444.2:ENST00000602725.5:ENST00000649841.1:ENST00000457805.6:ENST00000489313.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	4	79	2	1.90249	2.682295	3.4621	0.0261803	0.00218379	0.133676	0.0417893
chr4	24541529	24541610	2118573	0	-	0.283951	(0.28,0.32]	chr4	209213	2	SS5_PROX	SS5_PROX:INTRON	DHX15	ENSG00000109606.13	ENST00000336812.5:ENST00000503562.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	65	2	2.63379	2.68228	2.73077	0.0220748	0.00503861	0.115395	0.0646039
chr13	49661070	49661139	5591809	0	-	0.463768	(0.44,0.476]	chr13	534492	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	EBPL	ENSG00000123179.14	ENST00000242827.11:ENST00000378284.6:ENST00000378272.9:ENST00000495963.2:ENST00000473576.6:ENST00000378270.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	51	2	2.39003	2.68227	2.97451	0.0106488	0.00853825	0.0915714	0.0780043
chr2	121650284	121650381	860542	0	+	0.618557	(0.57,1]	chr2	96529	11	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NIFK-AS1	ENSG00000236859.8	ENST00000667483.1:ENST00000662168.1:ENST00000668016.1:ENST00000670491.1:ENST00000654001.1:ENST00000414554.7:ENST00000671498.1:ENST00000669018.1:ENST00000659307.1:ENST00000413904.6:ENST00000439321.1:ENST00000419902.3:ENST00000447668.2:ENST00000690074.1:ENST00000666647.1	lncRNA	lncRNA	lncRNA	lncRNA	5	44	2	2.55379	2.68218	2.81057	0.00169295	0.0015786	0.0381936	0.0362091
chr3	33861121	33861221	1395038	0	+	0.43	(0.408,0.44]	chr3	146133	55	INTRON	INTRON	PDCD6IP	ENSG00000170248.15	ENST00000457054.6:ENST00000648706.1:ENST00000307296.8:ENST00000465122.5:ENST00000489869.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	39	2	2.27698	2.68218	3.08738	0.0583528	0.00478231	0.167723	0.0636201
chr5	168498642	168498739	2540546	0	+	0.412371	(0.408,0.44]	chr5	242483	2	INTRON	INTRON	RARS1	ENSG00000113643.9	ENST00000231572.8:ENST00000520013.5:ENST00000518757.5:ENST00000520421.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	39	2	2.27698	2.68218	3.08738	0.0583528	0.00478231	0.167723	0.0636201
chr9	123081560	123081660	4196517	0	+	0.44	(0.408,0.44]	chr9	382917	44	INTRON	INTRON	RABGAP1	ENSG00000011454.18	ENST00000456584.5:ENST00000373647.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	39	2	2.27698	2.68218	3.08738	0.0583528	0.00478231	0.167723	0.0636201
chr9	112220386	112220485	4316812	0	-	0.363636	(0.35,0.378]	chr9	397001	28	UTR3	UTR3:EXON_MRNA	PTBP3	ENSG00000119314.16	ENST00000334318.10:ENST00000458258.5:ENST00000374257.6	protein_coding	protein_coding	protein_coding	protein_coding	11	175	2	2.42295	2.682175	2.9414	4.8327e-4	2.27489e-4	0.0203686	0.0133228
chr7	112452147	112452238	3381796	0	+	0.483516	(0.476,0.515]	chr7	316761	2	UTR5	UTR5:EXON_MRNA:INTRON	IFRD1	ENSG00000006652.15	ENST00000675578.1:ENST00000621379.4:ENST00000005558.8:ENST00000443101.6:ENST00000445335.1:ENST00000429071.5:ENST00000403825.8:ENST00000674915.1:ENST00000674887.1:ENST00000675041.1:ENST00000675717.1:ENST00000476927.5:ENST00000535603.5:ENST00000440625.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	117	2	2.12484	2.68215	3.23946	0.00276065	2.59571e-4	0.0469265	0.014326
chr1	45656159	45656257	440280	0	-	0.316327	(0.28,0.32]	chr1	53348	1	INTRON	INTRON	GPBP1L1	ENSG00000159592.11	ENST00000290795.7:ENST00000355105.8	protein_coding	protein_coding	protein_coding	protein_coding	2	49	2	2.18975	2.68214	3.17453	0.0776042	0.00429297	0.196285	0.0599065
chr14	34614024	34614124	5866943	0	-	0.52	(0.515,0.57]	chr14	557216	39	INTRON	INTRON	SNX6	ENSG00000129515.20	ENST00000362031.10:ENST00000396526.7:ENST00000652385.1:ENST00000556162.6:ENST00000555416.6:ENST00000557265.6:ENST00000556712.6:ENST00000557341.6:ENST00000556303.1:ENST00000555648.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	34	2	2.46104	2.682075	2.90311	0.032841	0.0094233	0.145164	0.0817766
chr17	57108048	57108148	6632581	0	+	0.54	(0.515,0.57]	chr17	647904	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	AKAP1	ENSG00000121057.13	ENST00000337714.8:ENST00000571629.5:ENST00000621116.4:ENST00000572557.5:ENST00000481416.5:ENST00000539273.5:ENST00000314126.4:ENST00000576295.5:ENST00000573326.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	34	2	2.46104	2.682075	2.90311	0.032841	0.0094233	0.145164	0.0817766
chr5	43040791	43040884	2613891	0	-	0.516129	(0.515,0.57]	chr5	248464	9	UTR5	UTR5:EXON_MRNA:INTRON	ENSG00000177738:ANXA2R	ENSG00000177738.5:ENSG00000177721.5	ENST00000503152.2:ENST00000665537.1:ENST00000314890.3	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	2	34	2	2.46104	2.682075	2.90311	0.032841	0.0094233	0.145164	0.0817766
chr1	224947084	224947184	322526	0	+	0.49	(0.476,0.515]	chr1	37105	169	INTRON	INTRON	DNAH14	ENSG00000185842.16	ENST00000445597.6:ENST00000430092.5:ENST00000366850.7:ENST00000400952.7:ENST00000682510.1:ENST00000366849.5:ENST00000498360.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	38	2	2.48527	2.68203	2.87879	0.03496	0.00999149	0.13747500000000001	0.0879541
chr5	109369942	109370041	2701966	0	-	0.50505	(0.476,0.515]	chr5	254340	8	INTRON	INTRON	PJA2	ENSG00000198961.10	ENST00000361557.4:ENST00000361189.7	protein_coding	protein_coding	protein_coding	protein_coding	2	38	2	2.48527	2.68203	2.87879	0.03496	0.00999149	0.13747500000000001	0.0879541
chr9	112713463	112713563	4318265	0	-	0.48	(0.476,0.515]	chr9	397118	112	INTRON	INTRON	INIP	ENSG00000148153.14	ENST00000374242.9:ENST00000497712.6:ENST00000374236.5:ENST00000481146.6:ENST00000374234.1:ENST00000476599.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	38	2	2.48527	2.68203	2.87879	0.03496	0.00999149	0.13747500000000001	0.0879541
chr12	55975721	55975820	5144878	0	+	0.292929	(0.28,0.32]	chr12	485912	12	INTRON	INTRON	RAB5B	ENSG00000111540.16	ENST00000553116.5:ENST00000549505.5:ENST00000360299.10:ENST00000546810.1:ENST00000548068.5:ENST00000549915.5:ENST00000448789.2:ENST00000551459.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	65	2	2.24061	2.681965	3.12332	0.0194267	0.00698537	0.119831	0.0718189
chrX	44923884	44923984	7649109	0	+	0.5	(0.476,0.515]	chrX	782726	495	INTRON	INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000675440.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000621147.5:ENST00000475233.1:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	157	2	2.20389	2.6819100000000002	3.15993	7.08867e-4	1.20366e-4	0.0242289	0.00992311
chr1	32963650	32963750	416542	0	-	0.5	(0.476,0.515]	chr1	50311	2	SS5_PROX	SS5_PROX:INTRON	RNF19B	ENSG00000116514.17	ENST00000373456.11:ENST00000235150.5:ENST00000356990.9	protein_coding	protein_coding	protein_coding	protein_coding	2	38	2	2.63168	2.681865	2.73205	0.0237106	0.0159328	0.118716	0.109464
chr17	66384616	66384716	6663118	0	+	0.5	(0.476,0.515]	chr17	650326	204	INTRON	INTRON	PRKCA	ENSG00000154229.12	ENST00000413366.8:ENST00000578063.5:ENST00000284384.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	38	2	2.63168	2.681865	2.73205	0.0237106	0.0159328	0.118716	0.109464
chr3	15819105	15819205	1624038	0	-	0.49	(0.476,0.515]	chr3	168034	44	INTRON	INTRON	ANKRD28	ENSG00000206560.12	ENST00000399451.6:ENST00000412318.5:ENST00000439830.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	38	2	2.63168	2.681865	2.73205	0.0237106	0.0159328	0.118716	0.109464
chr4	139352111	139352205	2050208	0	+	0.489362	(0.476,0.515]	chr4	203334	1	INTRON	INTRON	NAA15	ENSG00000164134.13	ENST00000296543.10:ENST00000398947.1:ENST00000468029.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	38	2	2.63168	2.681865	2.73205	0.0237106	0.0159328	0.118716	0.109464
chr5	134879794	134879894	2491483	0	+	0.51	(0.476,0.515]	chr5	238046	40	INTRON	INTRON	TXNDC15	ENSG00000113621.15	ENST00000358387.9:ENST00000511070.5:ENST00000506916.1:ENST00000507024.5:ENST00000508810.1:ENST00000508779.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	38	2	2.63168	2.681865	2.73205	0.0237106	0.0159328	0.118716	0.109464
chr5	181058051	181058151	2563028	0	+	0.48	(0.476,0.515]	chr5	245229	3	SS3_PROX	SS3_PROX:INTRON	BTNL9	ENSG00000165810.17	ENST00000327705.14:ENST00000512570.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	38	2	2.63168	2.681865	2.73205	0.0237106	0.0159328	0.118716	0.109464
chr7	4723945	4724045	3270332	0	+	0.48	(0.476,0.515]	chr7	303884	407	INTRON	INTRON	FOXK1	ENSG00000164916.11	ENST00000328914.5	protein_coding	protein_coding	protein_coding	protein_coding	2	38	2	2.63168	2.681865	2.73205	0.0237106	0.0159328	0.118716	0.109464
chr7	4724345	4724445	3270336	0	+	0.5	(0.476,0.515]	chr7	303884	411	INTRON	INTRON	FOXK1	ENSG00000164916.11	ENST00000328914.5	protein_coding	protein_coding	protein_coding	protein_coding	2	38	2	2.63168	2.681865	2.73205	0.0237106	0.0159328	0.118716	0.109464
chr8	102263037	102263131	4011188	0	-	0.393617	(0.378,0.408]	chr8	366970	6	INTRON	INTRON	UBR5	ENSG00000104517.13	ENST00000520539.6:ENST00000220959.8:ENST00000521922.5:ENST00000518205.5	protein_coding	protein_coding	protein_coding	protein_coding	2	40	2	2.30961	2.68177	3.05393	0.055088	0.00551532	0.165463	0.0672816
chr3	98586452	98586550	1755089	0	-	0.285714	(0.28,0.32]	chr3	177997	4	INTRON	INTRON	CPOX	ENSG00000080819.9	ENST00000647941.2	protein_coding	protein_coding	protein_coding	protein_coding	3	65	2	2.05458	2.681755	3.30893	0.0381508	0.00260504	0.141764	0.0470772
chr14	35029152	35029241	5691522	0	+	0.393258	(0.378,0.408]	chr14	541326	1	UTR3	UTR3:EXON_MRNA	SRP54	ENSG00000100883.13	ENST00000556994.5:ENST00000678836.1:ENST00000546080.6:ENST00000555746.6:ENST00000678963.1:ENST00000678477.1:ENST00000677621.1:ENST00000678519.1:ENST00000678627.1:ENST00000216774.11:ENST00000555557.5:ENST00000678274.1:ENST00000677647.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	58	2	2.30961	2.68175	3.05389	0.055088	6.75567e-4	0.165463	0.0236067
chr5	141617698	141617797	2740176	0	-	0.494949	(0.476,0.515]	chr5	258168	291	INTRON	INTRON	DIAPH1	ENSG00000131504.18	ENST00000647433.1:ENST00000389054.8:ENST00000518047.5:ENST00000523100.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	99	2	2.67242	2.68173	2.69104	0.00136918	9.94264e-4	0.0336718	0.0290397
chr2	171540707	171540807	917510	0	+	0.3	(0.28,0.32]	chr2	101037	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	CYBRD1	ENSG00000071967.12	ENST00000409484.5:ENST00000468308.1:ENST00000321348.9:ENST00000375252.3:ENST00000474182.1:ENST00000494587.1:ENST00000445146.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	65	2	2.09794	2.681725	3.26551	0.0340483	0.0030714	0.134863	0.0509893
chr1	41231774	41231874	430725	0	-	0.49	(0.476,0.515]	chr1	52255	452	INTRON	INTRON	SCMH1	ENSG00000010803.17	ENST00000695335.1:ENST00000372596.5:ENST00000372597.5:ENST00000337495.9:ENST00000488592.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	51	2	2.53671	2.68172	2.82673	0.0134403	0.00624027	0.0946278	0.0718843
chr2	61507259	61507358	1130906	0	-	0.464646	(0.44,0.476]	chr2	121597	46	INTRON	INTRON	XPO1	ENSG00000082898.19	ENST00000677110.1:ENST00000676553.1:ENST00000677556.1:ENST00000677814.1:ENST00000676771.1:ENST00000677803.1:ENST00000677239.1:ENST00000678790.1:ENST00000677928.1:ENST00000678182.1:ENST00000677150.1:ENST00000678172.1:ENST00000678360.1:ENST00000678081.1:ENST00000676889.1:ENST00000676783.1:ENST00000679035.1:ENST00000677422.1:ENST00000677417.1:ENST00000677813.1:ENST00000676999.1:ENST00000676667.1:ENST00000678263.1:ENST00000678877.1:ENST00000677933.1:ENST00000680228.1:ENST00000677289.1:ENST00000677190.1:ENST00000401558.7:ENST00000428210.5:ENST00000677290.1:ENST00000677850.1:ENST00000451765.6:ENST00000676789.1:ENST00000678741.1:ENST00000404992.6:ENST00000406957.5:ENST00000443240.5:ENST00000476585.5:ENST00000468259.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	62	2	1.90381	2.6816899999999997	3.45957	0.0260626	0.00106385	0.122153	0.0300133
chr20	32786201	32786301	7256896	0	+	0.58	(0.57,1]	chr20	737139	3	SS3_PROX	SS3_PROX:INTRON	DNMT3B	ENSG00000088305.19	ENST00000696232.1:ENST00000328111.6:ENST00000696231.1:ENST00000348286.6:ENST00000353855.6:ENST00000696233.1:ENST00000443239.7:ENST00000696234.1:ENST00000696235.1:ENST00000456297.6:ENST00000696236.1:ENST00000696237.1:ENST00000201963.3:ENST00000696238.1:ENST00000696239.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	52	2	2.49621	2.681585	2.86696	0.00209832	2.88184e-4	0.0413494	0.0150627
chrX	71412732	71412831	7678711	0	+	0.494949	(0.476,0.515]	chrX	786269	42	INTRON	INTRON	TAF1	ENSG00000147133.17	ENST00000683202.1:ENST00000373790.9:ENST00000423759.6:ENST00000683782.1:ENST00000683668.1:ENST00000276072.9:ENST00000463163.5:ENST00000373775.8:ENST00000485087.6:ENST00000437147.8:ENST00000683358.1:ENST00000682124.1:ENST00000461764.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	113	2	2.61871	2.68154	2.74437	0.00174257	2.8757e-4	0.0375363	0.0150609
chr15	57998222	57998322	6186858	0	-	0.38	(0.378,0.408]	chr15	589758	27	INTRON	INTRON	ALDH1A2	ENSG00000128918.15	ENST00000537372.5:ENST00000249750.9:ENST00000347587.7:ENST00000430119.6:ENST00000558231.5:ENST00000559517.5:ENST00000559266.5:ENST00000561070.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	41	2	2.13703	2.6815100000000003	3.22599	0.0797592	0.00288652	0.19979	0.0494641
chr15	50572214	50572311	6172094	0	-	0.42268	(0.408,0.44]	chr15	588197	17	INTRON	INTRON	TRPM7	ENSG00000092439.16	ENST00000561267.5:ENST00000646667.1:ENST00000560955.5:ENST00000561443.5:ENST00000560516.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	39	2	2.58179	2.6815049999999996	2.78122	0.024638	0.015812	0.131869	0.101453
chr5	56829137	56829237	2357180	0	+	0.41	(0.408,0.44]	chr5	227407	127	INTRON	INTRON	MAP3K1	ENSG00000095015.6	ENST00000399503.4	protein_coding	protein_coding	protein_coding	protein_coding	2	39	2	2.58179	2.6815049999999996	2.78122	0.024638	0.015812	0.131869	0.101453
chr8	55902277	55902377	3754559	0	+	0.43	(0.408,0.44]	chr8	349249	218	INTRON	INTRON	LYN	ENSG00000254087.8	ENST00000519728.6:ENST00000520220.6	protein_coding	protein_coding	protein_coding	protein_coding	2	39	2	2.58179	2.6815049999999996	2.78122	0.024638	0.015812	0.131869	0.101453
chr11	14300536	14300636	4917084	0	-	0.48	(0.476,0.515]	chr11	460793	43	INTRON	INTRON	RRAS2	ENSG00000133818.14	ENST00000256196.9:ENST00000537760.5:ENST00000529237.5:ENST00000534746.5:ENST00000526063.5:ENST00000532814.5:ENST00000531807.5:ENST00000532950.5:ENST00000531421.5:ENST00000526717.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	51	2	2.26034	2.68149	3.10264	0.0166235	0.00543163	0.110511	0.0645052
chr2	230735647	230735747	1030387	0	+	0.48	(0.476,0.515]	chr2	110002	212	INTRON	INTRON	CAB39	ENSG00000135932.12	ENST00000258418.10:ENST00000409788.7:ENST00000410084.7	protein_coding	protein_coding	protein_coding	protein_coding	3	51	2	2.26034	2.68149	3.10264	0.0166235	0.00543163	0.110511	0.0645052
chr18	36024976	36025065	6963110	0	-	0.303371	(0.28,0.32]	chr18	689045	2	UTR3	UTR3:EXON_MRNA:INTRON	RPRD1A	ENSG00000141425.18	ENST00000399022.9:ENST00000590898.5:ENST00000357384.8:ENST00000588737.5:ENST00000585953.5	protein_coding	protein_coding	protein_coding	protein_coding	2	49	2	2.53522	2.6814549999999997	2.82769	0.0310424	0.0169391	0.143457	0.103888
chr5	135359419	135359518	2728512	0	-	0.282828	(0.28,0.32]	chr5	256807	65	EXON_LNCRNA	EXON_LNCRNA:INTRON	MACROH2A1	ENSG00000113648.17	ENST00000511689.6:ENST00000512507.5:ENST00000304332.8:ENST00000687629.1:ENST00000688649.1:ENST00000312469.8:ENST00000360597.8:ENST00000506671.5:ENST00000423969.6:ENST00000510038.1:ENST00000507868.5:ENST00000508785.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	49	2	2.53522	2.6814549999999997	2.82769	0.0310424	0.0169391	0.143457	0.103888
chr8	26303645	26303743	3716217	0	+	0.336735	(0.32,0.35]	chr8	345368	47	INTRON	INTRON	PPP2R2A	ENSG00000221914.11	ENST00000380737.8:ENST00000520329.5:ENST00000518254.5:ENST00000524169.5:ENST00000518397.5:ENST00000522535.5:ENST00000665949.1:ENST00000522150.5:ENST00000523473.5:ENST00000521095.5:ENST00000660435.1:ENST00000523925.5:ENST00000524099.5:ENST00000315985.7:ENST00000519636.5:ENST00000522482.5:ENST00000521557.5:ENST00000519439.5:ENST00000521484.5:ENST00000523964.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	84	2	2.32678	2.681375	3.03597	0.00832487	0.00272092	0.0774402	0.0481508
chr16	21852923	21853017	6461766	0	-	0.468085	(0.44,0.476]	chr16	623445	5	INTRON	INTRON	NPIPB4	ENSG00000185864.18	ENST00000415645.6:ENST00000682606.1:ENST00000542133.5:ENST00000539318.5:ENST00000341400.11:ENST00000518761.8:ENST00000520808.6:ENST00000536041.5:ENST00000529969.1:ENST00000540103.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	100	2	2.32184	2.681285	3.04073	0.00609071	1.55969e-4	0.0676501	0.0106835
chr1	16328805	16328905	382383	0	-	0.49	(0.476,0.515]	chr1	44888	130	INTRON	INTRON	FBXO42	ENSG00000037637.11	ENST00000375592.8	protein_coding	protein_coding	protein_coding	protein_coding	7	116	2	2.38129	2.6812050000000003	2.98112	0.00474233	7.29071e-5	0.0600445	0.0071219
chr21	9117875	9117975	7426518	0	-	0.38	(0.378,0.408]	chr21	757579	296	INTRON	INTRON	TEKT4P2	ENSG00000188681.12	ENST00000690061.1:ENST00000689141.1:ENST00000688310.1:ENST00000687537.1:ENST00000690096.1:ENST00000687888.1:ENST00000690389.1:ENST00000684989.1:ENST00000416067.6:ENST00000693307.1:ENST00000692383.1:ENST00000685666.1:ENST00000688451.1:ENST00000691190.1:ENST00000685532.1:ENST00000687488.1:ENST00000690713.1:ENST00000691834.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	2	40	2	2.63247	2.6812	2.72993	0.0215745	0.0188736	0.123836	0.108861
chr4	98890842	98890898	2208133	0	-	0.392857	(0.378,0.408]	chr4	216160	2	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	EIF4E	ENSG00000151247.13	ENST00000450253.7:ENST00000280892.10:ENST00000515638.5:ENST00000504432.5:ENST00000511644.5:ENST00000505992.1:ENST00000505194.5:ENST00000507665.5:ENST00000505829.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	40	2	2.63247	2.6812	2.72993	0.0215745	0.0188736	0.123836	0.108861
chr9	91921965	91922065	4284985	0	-	0.4	(0.378,0.408]	chr9	393921	349	INTRON	INTRON	ROR2	ENSG00000169071.15	ENST00000375715.5:ENST00000375708.4:ENST00000495386.5:ENST00000546883.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	40	2	2.63247	2.6812	2.72993	0.0215745	0.0188736	0.123836	0.108861
chr1	110346517	110346599	182419	0	+	0.365854	(0.35,0.378]	chr1	20247	3	UTR3	UTR3:EXON_MRNA	RBM15	ENSG00000162775.17	ENST00000652747.1:ENST00000618772.4:ENST00000487146.8:ENST00000369784.9:ENST00000650953.2:ENST00000654015.1:ENST00000617047.1	protein_coding	protein_coding	protein_coding	protein_coding	5	80	2	1.54563	2.6811800000000003	3.81673	0.046845	3.76372e-4	0.167716	0.0179911
chr3	5131778	5131878	1353670	0	+	0.28	[0,0.28]	chr3	142361	28	INTRON	INTRON	ARL8B	ENSG00000134108.14	ENST00000429403.5:ENST00000256496.8:ENST00000455168.5:ENST00000444332.1:ENST00000419534.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	140	2	2.66365	2.68117	2.69869	0.00643225	8.03523e-4	0.0697113	0.0258804
chr12	76075938	76076037	5370138	0	-	0.383838	(0.378,0.408]	chr12	512329	13	INTRON	INTRON	NAP1L1	ENSG00000187109.15	ENST00000618691.5:ENST00000393263.7:ENST00000431879.7:ENST00000547773.5:ENST00000544816.5:ENST00000542344.5:ENST00000535020.6:ENST00000549596.5:ENST00000552342.5:ENST00000548044.5:ENST00000550934.5:ENST00000551992.5:ENST00000548273.5:ENST00000551600.5:ENST00000547704.5:ENST00000549988.5:ENST00000547479.5:ENST00000549479.1:ENST00000551500.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	12	196	2	2.6666	2.68107	2.69554	3.07621e-4	6.90975e-5	0.0161432	0.00688956
chr14	101894306	101894406	5819849	0	+	0.37	(0.35,0.378]	chr14	551912	4	SS3_PROX	SS3_PROX:INTRON	PPP2R5C	ENSG00000078304.20	ENST00000694906.1:ENST00000422945.6:ENST00000328724.9:ENST00000350249.7:ENST00000334743.9:ENST00000445439.7:ENST00000557095.5:ENST00000554137.5:ENST00000556218.5:ENST00000557534.1:ENST00000557716.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	81	2	2.2877	2.6810400000000003	3.07438	0.0155765	9.54868e-4	0.109411	0.0282401
chr4	127922582	127922682	2238121	0	-	0.35	(0.32,0.35]	chr4	219046	2	INTRON	INTRON	MFSD8	ENSG00000164073.11	ENST00000296468.8:ENST00000641686.2:ENST00000641186.1:ENST00000641774.1:ENST00000641748.1:ENST00000641508.1:ENST00000641690.1:ENST00000641928.1:ENST00000641464.1:ENST00000641092.1:ENST00000641397.1:ENST00000641393.1:ENST00000641025.1:ENST00000641509.1:ENST00000642034.1:ENST00000641178.1:ENST00000641147.1:ENST00000641753.1:ENST00000641434.1:ENST00000641482.1:ENST00000641133.1:ENST00000641146.1:ENST00000641413.1:ENST00000641869.1:ENST00000515130.6:ENST00000641332.1:ENST00000641870.1:ENST00000641949.1:ENST00000641228.1:ENST00000641590.1:ENST00000641843.1:ENST00000642078.1:ENST00000641882.1:ENST00000641742.1:ENST00000641658.1:ENST00000513559.6:ENST00000642012.1:ENST00000509826.2:ENST00000642042.1:ENST00000641340.1:ENST00000641388.1:ENST00000641830.1:ENST00000641538.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	82	2	2.12121	2.6810400000000003	3.24087	0.00650424	0.00420518	0.0735144	0.0572185
chr5	105384360	105384460	2696270	0	-	0.4	(0.378,0.408]	chr5	254248	1381	INTRON	INTRON	ENSG00000251574	ENSG00000251574.8	ENST00000503650.1	lncRNA	lncRNA	lncRNA	lncRNA	5	86	2	2.24048	2.68099	3.1215	0.00867536	4.84777e-4	0.0787771	0.0199443
chr16	189606	189695	6425778	0	-	0.370787	(0.35,0.378]	chr16	617397	4	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	LUC7L	ENSG00000007392.17	ENST00000337351.8:ENST00000426094.5:ENST00000397783.5:ENST00000629543.2:ENST00000490762.5:ENST00000293872.13:ENST00000429378.5:ENST00000468732.5:ENST00000464711.5:ENST00000442701.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	143	2	2.6658	2.6809000000000003	2.696	7.55807e-4	4.12892e-4	0.0251563	0.0181365
chr17	31118860	31118960	6591372	0	+	0.39	(0.378,0.408]	chr17	641053	231	INTRON	INTRON	NF1	ENSG00000196712.20	ENST00000696138.1:ENST00000356175.7:ENST00000487476.5:ENST00000691014.1:ENST00000358273.9:ENST00000431387.8:ENST00000579081.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	75	2	1.39189	2.6808300000000003	3.96977	0.0751636	9.19167e-5	0.193731	0.00801007
chr11	67139326	67139425	4812647	0	+	0.535354	(0.515,0.57]	chr11	448106	69	INTRON	INTRON	KDM2A	ENSG00000173120.15	ENST00000529006.7:ENST00000398645.6:ENST00000532436.5:ENST00000527157.1:ENST00000308783.9	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	44	2	2.39351	2.680825	2.96814	0.0100431	0.00756432	0.0881096	0.0749063
chr11	14323408	14323507	4917314	0	-	0.454545	(0.44,0.476]	chr11	460800	147	INTRON	INTRON	RRAS2	ENSG00000133818.14	ENST00000256196.9:ENST00000537760.5:ENST00000529237.5:ENST00000534746.5:ENST00000526063.5:ENST00000532814.5:ENST00000531807.5:ENST00000532950.5:ENST00000531421.5:ENST00000526717.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	62	2	1.92837	2.68071	3.43305	0.0222222	0.00159668	0.124303	0.0364566
chr19	4996387	4996486	7003689	0	+	0.585859	(0.57,1]	chr19	694800	268	INTRON	INTRON	KDM4B	ENSG00000127663.15	ENST00000159111.9:ENST00000611640.4:ENST00000588337.5:ENST00000381759.8	protein_coding	protein_coding	protein_coding	protein_coding	2	22	2	2.36411	2.6807	2.99729	0.0408868	0.00538023	0.161534	0.0642754
chr22	49826697	49826796	7603217	0	-	0.585859	(0.57,1]	chr22	778674	9	INTRON	INTRON	BRD1	ENSG00000100425.19	ENST00000404760.6	protein_coding	protein_coding	protein_coding	protein_coding	2	22	2	2.36411	2.6807	2.99729	0.0408868	0.00538023	0.161534	0.0642754
chr3	48690410	48690509	1689422	0	-	0.616162	(0.57,1]	chr3	172821	3	INTRON	INTRON	IP6K2	ENSG00000068745.15	ENST00000328631.10:ENST00000479914.5:ENST00000491686.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	22	2	2.36411	2.6807	2.99729	0.0408868	0.00538023	0.161534	0.0642754
chr5	132300105	132300204	2486221	0	+	0.393939	(0.378,0.408]	chr5	237204	41	INTRON	INTRON	SLC22A4	ENSG00000197208.6	ENST00000200652.4:ENST00000491257.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	53	2	2.51464	2.680635	2.84663	0.0133954	0.00684341	0.0946278	0.0748032
chr1	171534536	171534633	253717	0	+	0.371134	(0.35,0.378]	chr1	30158	12	INTRON	INTRON	PRRC2C	ENSG00000117523.18	ENST00000647382.2:ENST00000367742.7:ENST00000338920.8:ENST00000426496.6	protein_coding	protein_coding	protein_coding	protein_coding	12	183	2	2.15603	2.6806349999999997	3.20524	7.67672e-4	1.29841e-4	0.0254574	0.0103721
chr7	2356119	2356219	3269633	0	+	0.39	(0.378,0.408]	chr7	303797	3	INTRON	INTRON	EIF3B	ENSG00000106263.19	ENST00000431643.5:ENST00000360876.9:ENST00000413917.5:ENST00000397011.2	protein_coding	protein_coding	protein_coding	protein_coding	7	95	2	1.84255	2.680575	3.5186	0.0099264	8.45009e-4	0.0839368	0.0263813
chr14	55360051	55360149	5726689	0	+	0.469388	(0.44,0.476]	chr14	543492	45	INTRON	INTRON	FBXO34	ENSG00000178974.11	ENST00000681074.1:ENST00000680682.1:ENST00000680658.1:ENST00000555280.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	5	83	2	2.10892	2.68057	3.25222	0.0132897	2.39476e-4	0.0944742	0.0136403
chr4	165339178	165339278	2079751	0	+	0.52	(0.515,0.57]	chr4	205580	4	SS5_PROX	SS5_PROX:INTRON	MSMO1	ENSG00000052802.13	ENST00000507013.5:ENST00000261507.11:ENST00000393766.6:ENST00000504317.1	protein_coding	protein_coding	protein_coding	protein_coding	4	61	2	2.43589	2.6804750000000004	2.92506	0.0370871	2.50659e-4	0.139194	0.0140705
chr16	15977359	15977458	6308036	0	+	0.40404	(0.378,0.408]	chr16	603510	272	INTRON	INTRON	ABCC1	ENSG00000103222.20	ENST00000574224.2:ENST00000678422.1:ENST00000677164.1:ENST00000399408.7:ENST00000572882.3:ENST00000399410.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	41	2	2.45932	2.6804699999999997	2.90162	0.0346754	0.0113157	0.148144	0.0886121
chr20	58897908	58898001	7291078	0	+	0.526882	(0.515,0.57]	chr20	741831	6	EXON_MRNA	EXON_MRNA:INTRON	GNAS	ENSG00000087460.29	ENST00000313949.11:ENST00000371075.7:ENST00000419558.7:ENST00000371098.6:ENST00000657090.1:ENST00000453292.7:ENST00000306090.12:ENST00000491348.5:ENST00000472183.6:ENST00000462499.6:ENST00000482112.6:ENST00000663479.2:ENST00000493744.5:ENST00000490374.6:ENST00000467227.6:ENST00000676826.2:ENST00000481768.6:ENST00000371100.9:ENST00000371102.8:ENST00000464624.7:ENST00000349036.9:ENST00000423897.7:ENST00000464960.5:ENST00000488546.6:ENST00000667293.2:ENST00000481039.6:ENST00000467321.6:ENST00000477931.5:ENST00000485673.6:ENST00000470512.6:ENST00000464788.6:ENST00000469431.6:ENST00000604005.6:ENST00000478585.6:ENST00000480975.5:ENST00000480232.6:ENST00000484504.5:ENST00000683015.1:ENST00000461152.6:ENST00000371095.7:ENST00000265620.11:ENST00000354359.12:ENST00000371085.8:ENST00000468895.6:ENST00000371081.5:ENST00000338783.7:ENST00000682803.1:ENST00000488652.6:ENST00000476935.6:ENST00000492907.6:ENST00000603546.2:ENST00000684284.1:ENST00000682134.1:ENST00000682829.1:ENST00000483387.2:ENST00000487862.5:ENST00000496934.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	53	2	2.00468	2.6803850000000002	3.35609	0.0166344	0.00174131	0.110511	0.0375363
chr7	106096898	106096995	3608050	0	-	0.474227	(0.44,0.476]	chr7	336445	2	INTRON	INTRON	SYPL1	ENSG00000008282.9	ENST00000011473.6:ENST00000455385.7:ENST00000464029.5:ENST00000470347.1:ENST00000634737.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	51	2	2.49823	2.68027	2.86231	0.012214	0.00718224	0.0910127	0.0756118
chr4	126470140	126470240	2235410	0	-	0.36	(0.35,0.378]	chr4	219023	46	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	13	194	2	2.22089	2.680175	3.13946	4.15095e-4	1.82052e-4	0.018216	0.0122264
chr3	113490446	113490544	1771818	0	-	0.540816	(0.515,0.57]	chr3	179402	10	INTRON	INTRON	SPICE1	ENSG00000163611.11	ENST00000295872.8:ENST00000496105.1:ENST00000495812.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	60	2	2.27238	2.680135	3.08789	0.0161808	4.83127e-4	0.101453	0.0199261
chr1	6208307	6208380	5162	0	+	0.39726	(0.378,0.408]	chr1	962	1	INTRON	INTRON	RNF207	ENSG00000158286.13	ENST00000377939.5	protein_coding	protein_coding	protein_coding	protein_coding	3	54	2	2.30628	2.680105	3.05393	0.0163339	0.00551532	0.101571	0.0672816
chr1	40162136	40162235	79970	0	+	0.363636	(0.35,0.378]	chr1	10405	1	INTRON	INTRON	RLF	ENSG00000117000.9	ENST00000372771.5	protein_coding	protein_coding	protein_coding	protein_coding	9	151	2	2.53943	2.680055	2.82068	0.00084924900000000005	2.68934e-4	0.0267232	0.0145349
chr12	122611859	122611953	5241498	0	+	0.308511	(0.28,0.32]	chr12	497859	2	INTRON	INTRON	KNTC1	ENSG00000184445.12	ENST00000450485.6:ENST00000333479.12:ENST00000436959.7:ENST00000546125.1:ENST00000542727.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	79	2	1.96802	2.6800300000000004	3.39204	0.0251578	0.00188405	0.12011	0.0402736
chr22	19093782	19093882	7551728	0	-	0.41	(0.408,0.44]	chr22	771903	39	INTRON	INTRON	DGCR2	ENSG00000070413.20	ENST00000537045.5:ENST00000545799.5:ENST00000263196.12:ENST00000389262.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	83	2	2.5027	2.679965	2.85723	0.00238178	0.00211413	0.0449397	0.0415897
chr4	70978527	70978627	1971272	0	+	0.37	(0.35,0.378]	chr4	197601	19	INTRON	INTRON	MOB1B	ENSG00000173542.9	ENST00000309395.7:ENST00000396051.2:ENST00000511449.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	85	2	1.91549	2.67992	3.44435	0.00887698	0.00179102	0.0849778	0.0380316
chr12	122880937	122881037	5442425	0	-	0.49	(0.476,0.515]	chr12	520621	100	EXON_MRNA	EXON_MRNA:INTRON	VPS37B:ENSG00000280138	ENSG00000139722.7:ENSG00000280138.1	ENST00000267202.7:ENST00000535765.5:ENST00000371248.3:ENST00000623210.1	protein_coding	protein_coding	protein_coding:TEC	protein_coding:TEC	4	70	2	2.48551	2.679785	2.87406	0.00756632	0.00188729	0.0773151	0.0391691
chr22	41284201	41284300	7591134	0	-	0.434343	(0.408,0.44]	chr22	777373	18	INTRON	INTRON	RANGAP1	ENSG00000100401.20	ENST00000356244.8:ENST00000405486.5:ENST00000422838.1	protein_coding	protein_coding	protein_coding	protein_coding	6	96	2	2.63748	2.67978	2.72208	0.00364449	5.0683e-4	0.0535094	0.0202328
chr14	21266867	21266963	5835143	0	-	0.53125	(0.515,0.57]	chr14	554469	15	INTRON	INTRON	HNRNPC	ENSG00000092199.19	ENST00000336053.10:ENST00000553300.6:ENST00000554969.5:ENST00000556142.5:ENST00000554455.5:ENST00000553753.5:ENST00000555309.5:ENST00000555914.5:ENST00000557442.5:ENST00000556628.5:ENST00000556513.5:ENST00000555883.5:ENST00000557201.5:ENST00000420743.6:ENST00000554539.5:ENST00000554383.5:ENST00000555215.5:ENST00000555137.5:ENST00000554891.5:ENST00000556226.5:ENST00000555176.5:ENST00000553614.5:ENST00000557336.1:ENST00000557768.1:ENST00000557033.1:ENST00000555127.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	60	2	2.51561	2.67974	2.84387	0.00635044	0.0018149	0.0723103	0.0384415
chr9	37199941	37200041	4118456	0	+	0.55	(0.515,0.57]	chr9	375389	130	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000461038.5:ENST00000488607.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	134	2	2.42857	2.67973	2.93089	3.71848e-4	1.05321e-4	0.0173669	0.00920724
chr14	103685106	103685194	5828221	0	+	0.409091	(0.408,0.44]	chr14	553124	2	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	KLC1	ENSG00000126214.22	ENST00000348520.10:ENST00000380038.7:ENST00000334553.11:ENST00000389744.8:ENST00000555836.5:ENST00000347839.10:ENST00000553286.5:ENST00000557575.5:ENST00000452929.6:ENST00000554280.5:ENST00000557450.5:ENST00000554228.5:ENST00000634686.1:ENST00000246489.11:ENST00000445352.8:ENST00000537046.6:ENST00000553325.5:ENST00000555856.1:ENST00000535194.2:ENST00000553680.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	114	2	2.6118	2.679695	2.74759	0.00102152	5.80745e-4	0.029231300000000002	0.0218949
chr20	47287684	47287784	7348814	0	-	0.53	(0.515,0.57]	chr20	749311	4	SS3_PROX	SS3_PROX:INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000467200.6:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000468376.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	72	2	2.57713	2.679605	2.78208	0.00209264	0.00176427	0.0424943	0.0376652
chr12	68823614	68823696	5163138	0	+	0.365854	(0.35,0.378]	chr12	488922	1	SS5_PROX	SS5_PROX:INTRON	MDM2	ENSG00000135679.27	ENST00000258149.11:ENST00000393412.7:ENST00000311420.13:ENST00000393417.8:ENST00000258148.11:ENST00000539479.6:ENST00000523991.5:ENST00000543323.5:ENST00000393415.7:ENST00000393416.7:ENST00000481186.6:ENST00000545204.2:ENST00000544561.6:ENST00000665020.1:ENST00000666617.1:ENST00000671567.1:ENST00000393410.5:ENST00000496959.5:ENST00000299252.8:ENST00000360430.6:ENST00000517852.5:ENST00000546048.5:ENST00000540352.5:ENST00000542502.5:ENST00000537182.5:ENST00000536089.5:ENST00000393413.7:ENST00000350057.9:ENST00000348801.7:ENST00000478070.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	68	2	1.6599	2.67959	3.69928	0.0545616	3.94786e-4	0.165292	0.0178567
chr19	49488700	49488792	7089822	0	+	0.48913	(0.476,0.515]	chr19	709951	7	INTRON	INTRON	RPL13A	ENSG00000142541.18	ENST00000679106.1:ENST00000621674.4:ENST00000624069.3:ENST00000678510.1:ENST00000676477.1:ENST00000391857.9:ENST00000488946.1:ENST00000484279.5:ENST00000486930.6:ENST00000472481.5:ENST00000677048.1:ENST00000678146.1:ENST00000479992.5:ENST00000676556.1:ENST00000477613.6:ENST00000467825.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	24	290	2	1.9589	2.679545	3.40019	6.33181e-4	1.83376e-5	0.0231484	0.00328046
chr12	130791299	130791399	5447764	0	-	0.49	(0.476,0.515]	chr12	521515	18	UTR3	UTR3:EXON_MRNA	STX2	ENSG00000111450.14	ENST00000261653.10:ENST00000392373.7	protein_coding	protein_coding	protein_coding	protein_coding	9	143	2	2.6607	2.67954	2.69838	5.07516e-4	2.14753e-4	0.020816	0.0128622
chr15	64478317	64478417	6044265	0	+	0.51	(0.476,0.515]	chr15	575688	171	INTRON	INTRON	ZNF609	ENSG00000180357.10	ENST00000326648.5:ENST00000416172.1	protein_coding	protein_coding	protein_coding	protein_coding	3	52	2	1.86492	2.679515	3.49411	0.0550347	9.23453e-4	0.165463	0.0278392
chr3	43491422	43491522	1674128	0	-	0.53	(0.515,0.57]	chr3	170972	583	INTRON	INTRON	ANO10	ENSG00000160746.13	ENST00000292246.8:ENST00000350459.8:ENST00000396091.7:ENST00000414522.6:ENST00000451430.6:ENST00000448045.1	protein_coding	protein_coding	protein_coding	protein_coding	4	59	2	2.43783	2.67949	2.92115	0.00916404	0.00110258	0.0812949	0.03038
chr3	15026816	15026912	1372581	0	+	0.520833	(0.515,0.57]	chr3	144650	14	EXON_LNCRNA	EXON_LNCRNA:INTRON	NR2C2	ENSG00000177463.16	ENST00000425241.6:ENST00000323373.10:ENST00000475707.5:ENST00000393102.7:ENST00000617312.4:ENST00000406272.6:ENST00000478572.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	44	2	2.45585	2.67948	2.90311	0.0094233	0.00797827	0.0817766	0.0798772
chr10	125072610	125072710	4713455	0	-	0.33	(0.32,0.35]	chr10	434897	331	INTRON	INTRON	CTBP2	ENSG00000175029.17	ENST00000337195.9:ENST00000411419.6:ENST00000494626.6:ENST00000531469.5:ENST00000460976.5:ENST00000476817.1:ENST00000530884.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	111	2	2.12641	2.67942	3.23243	0.00815266	3.30385e-4	0.0766625	0.0161444
chr10	75212498	75212598	4464354	0	+	0.52	(0.515,0.57]	chr10	411811	2	SS5_PROX	SS5_PROX:INTRON	VDAC2	ENSG00000165637.14	ENST00000543351.5:ENST00000298468.9:ENST00000344036.8:ENST00000472137.5:ENST00000332211.11:ENST00000470745.5:ENST00000475142.5:ENST00000481876.5:ENST00000313132.8:ENST00000498394.5:ENST00000468285.1:ENST00000447677.5:ENST00000413289.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	69	2	1.82788	2.6793649999999998	3.53085	0.0123396	6.59951e-4	0.0914341	0.0232396
chr11	14347655	14347754	4917559	0	-	0.525253	(0.515,0.57]	chr11	460809	57	INTRON	INTRON	RRAS2	ENSG00000133818.14	ENST00000256196.9:ENST00000537760.5:ENST00000529237.5:ENST00000534746.5:ENST00000526063.5:ENST00000532814.5:ENST00000532950.5:ENST00000526717.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	44	2	2.32836	2.6793649999999998	3.03037	0.0126662	0.00608732	0.0982897	0.0676501
chr4	39766969	39767069	1953683	0	+	0.54	(0.515,0.57]	chr4	195650	58	INTRON	INTRON	UBE2K	ENSG00000078140.14	ENST00000510934.5:ENST00000261427.10:ENST00000438068.6:ENST00000513231.5:ENST00000503368.5:ENST00000445950.2:ENST00000510719.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	44	2	2.32836	2.6793649999999998	3.03037	0.0126662	0.00608732	0.0982897	0.0676501
chr6	33648606	33648706	2847552	0	+	0.53	(0.515,0.57]	chr6	268791	77	INTRON	INTRON	ITPR3	ENSG00000096433.11	ENST00000374316.9:ENST00000605930.3	protein_coding	protein_coding	protein_coding	protein_coding	3	44	2	2.32836	2.6793649999999998	3.03037	0.0126662	0.00608732	0.0982897	0.0676501
chr6	42942804	42942903	2867901	0	+	0.525253	(0.515,0.57]	chr6	271446	8	INTRON	INTRON	ENSG00000231113	ENSG00000231113.2	ENST00000450671.1	lncRNA	lncRNA	lncRNA	lncRNA	4	59	2	2.67733	2.679325	2.68132	0.00366712	0.00324198	0.0535094	0.0524329
chr12	121909252	121909351	5238389	0	+	0.50505	(0.476,0.515]	chr12	497289	58	INTRON	INTRON	PSMD9	ENSG00000110801.14	ENST00000537407.5:ENST00000540962.5:ENST00000261817.6:ENST00000542602.1:ENST00000541212.6:ENST00000543699.5:ENST00000535293.5:ENST00000544724.5:ENST00000544254.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	104	2	2.27014	2.67922	3.0883	0.00172923	7.31567e-4	0.0384338	0.0248722
chr7	135948998	135949098	3649186	0	-	0.4	(0.378,0.408]	chr7	339202	186	INTRON	INTRON	MTPN	ENSG00000105887.11	ENST00000393085.4:ENST00000435723.1	protein_coding	protein_coding	protein_coding	protein_coding	6	98	2	2.49361	2.679125	2.86464	0.00215581	0.00109695	0.0417866	0.0303708
chr7	75443918	75444018	3558506	0	-	0.44	(0.408,0.44]	chr7	331545	13	INTRON	INTRON	POM121C	ENSG00000272391.6	ENST00000615331.5:ENST00000398379.2	protein_coding	protein_coding	protein_coding	protein_coding	4	69	2	2.53313	2.67912	2.82511	0.00739595	0.00189528	0.074277	0.0402736
chr22	18555760	18555859	7550909	0	-	0.474747	(0.44,0.476]	chr22	771829	28	INTRON	INTRON	PI4KAP1	ENSG00000274602.5	ENST00000612500.4:ENST00000611748.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	7	85	2	1.60853	2.67889	3.74925	0.020211	4.08974e-4	0.121301	0.0185763
chr6	26196551	26196647	3071007	0	-	0.479167	(0.476,0.515]	chr6	285430	11	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ENSG00000282988	ENSG00000282988.2	ENST00000635641.1:ENST00000650491.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	142	2	1.94021	2.67888	3.41755	0.00523626	2.80798e-5	0.0656295	0.00435887
chr15	94904339	94904439	6105676	0	+	0.38	(0.378,0.408]	chr15	581678	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	ENSG00000277654	ENSG00000277654.6	ENST00000618611.4:ENST00000648065.1:ENST00000618377.1:ENST00000621842.4:ENST00000615751.4:ENST00000614581.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	6	82	2	1.58985	2.678795	3.76774	0.0290335	4.21442e-4	0.141186	0.0189827
chr10	125090115	125090215	4713631	0	-	0.41	(0.408,0.44]	chr10	434903	14	INTRON	INTRON	CTBP2	ENSG00000175029.17	ENST00000337195.9:ENST00000411419.6:ENST00000494626.6:ENST00000531469.5:ENST00000460976.5:ENST00000476817.1:ENST00000530884.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	97	2	2.33816	2.6787900000000002	3.01942	0.00289605	7.74413e-4	0.0477416	0.0256083
chr12	50445516	50445616	5136792	0	+	0.35	(0.32,0.35]	chr12	484418	35	INTRON	INTRON	LARP4	ENSG00000161813.23	ENST00000293618.12:ENST00000429001.7:ENST00000398473.7:ENST00000522085.5:ENST00000518444.5:ENST00000518561.5:ENST00000347328.9:ENST00000520064.2:ENST00000521120.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	97	2	2.09793	2.6787349999999996	3.25954	0.0156788	2.88334e-4	0.101453	0.0150627
chr9	137629033	137629133	4223572	0	+	0.34	(0.32,0.35]	chr9	388152	86	INTRON	INTRON	EHMT1	ENSG00000181090.21	ENST00000462484.5:ENST00000371394.6:ENST00000630754.2:ENST00000460843.6:ENST00000626216.2:ENST00000637593.1:ENST00000629335.2:ENST00000637335.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	60	2	2.22429	2.67853	3.13277	0.0226421	0.00458313	0.117557	0.0622676
chr1	47313156	47313256	446104	0	-	0.54	(0.515,0.57]	chr1	54078	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	STIL	ENSG00000123473.17	ENST00000360380.7:ENST00000371877.8:ENST00000337817.10:ENST00000447475.7	protein_coding	protein_coding	protein_coding	protein_coding	3	47	2	2.43589	2.67852	2.92115	0.0370871	0.00110258	0.139194	0.03038
chr4	143337460	143337560	2054079	0	+	0.52	(0.515,0.57]	chr4	203716	2	SS5_PROX	SS5_PROX:INTRON	GAB1	ENSG00000109458.9	ENST00000262995.8:ENST00000262994.9:ENST00000514639.5	protein_coding	protein_coding	protein_coding	protein_coding	2	33	2	2.52504	2.6784600000000003	2.83188	0.029342	0.0108207	0.128055	0.0920575
chr6	157845181	157845281	3015982	0	+	0.54	(0.515,0.57]	chr6	281353	151	INTRON	INTRON	SNX9	ENSG00000130340.17	ENST00000614703.4:ENST00000614800.4:ENST00000680863.1:ENST00000679814.1:ENST00000680464.1:ENST00000681186.1:ENST00000679732.1:ENST00000681183.1:ENST00000681534.1:ENST00000681651.1:ENST00000680089.1:ENST00000680078.1:ENST00000680974.1:ENST00000680095.1:ENST00000680015.1:ENST00000681138.1:ENST00000392185.8:ENST00000679790.1:ENST00000680495.1:ENST00000679691.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	33	2	2.52504	2.6784600000000003	2.83188	0.029342	0.0108207	0.128055	0.0920575
chr19	3508169	3508269	7000688	0	+	0.43	(0.408,0.44]	chr19	694239	13	INTRON	INTRON	FZR1	ENSG00000105325.15	ENST00000441788.7:ENST00000652521.1:ENST00000588327.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	55	2	2.6117	2.67844	2.74518	0.0152229	0.00555224	0.108535	0.0648867
chr17	47977431	47977531	6623180	0	+	0.54	(0.515,0.57]	chr17	646213	2	SS3_PROX	SS3_PROX:INTRON	CDK5RAP3	ENSG00000108465.15	ENST00000536708.6:ENST00000584991.5:ENST00000584063.5:ENST00000338399.9:ENST00000585163.5:ENST00000580287.5:ENST00000580391.5:ENST00000580670.6:ENST00000584168.5:ENST00000582114.5:ENST00000577802.1:ENST00000583697.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	33	2	2.60899	2.678355	2.74772	0.0232669	0.0142192	0.118148	0.103638
chr21	10417605	10417705	7368170	0	+	0.56	(0.515,0.57]	chr21	751975	23	INTRON	INTRON	BAGE2	ENSG00000187172.15	ENST00000474011.5:ENST00000470054.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	2	33	2	2.60899	2.678355	2.74772	0.0232669	0.0142192	0.118148	0.103638
chr7	55681657	55681754	3535757	0	-	0.525773	(0.515,0.57]	chr7	329731	7	EXON_LNCRNA	EXON_LNCRNA	FKBP9P1	ENSG00000176826.15	ENST00000455909.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	2	33	2	2.60899	2.678355	2.74772	0.0232669	0.0142192	0.118148	0.103638
chr12	50408607	50408707	5136410	0	+	0.38	(0.378,0.408]	chr12	484352	54	INTRON	INTRON	LARP4	ENSG00000161813.23	ENST00000550522.5:ENST00000293618.12:ENST00000429001.7:ENST00000398473.7:ENST00000548174.5:ENST00000548697.5:ENST00000548993.5:ENST00000522085.5:ENST00000518444.5:ENST00000551886.5:ENST00000523389.5:ENST00000518561.5:ENST00000347328.9:ENST00000550260.1:ENST00000517559.5:ENST00000552445.1	protein_coding	protein_coding	protein_coding	protein_coding	5	74	2	1.52219	2.67833	3.83447	0.0531838	1.86403e-4	0.162538	0.0119078
chr17	6904501	6904600	6717248	0	-	0.444444	(0.44,0.476]	chr17	658643	228	INTRON	INTRON	ALOX12-AS1	ENSG00000215067.11	ENST00000653385.1:ENST00000659418.1:ENST00000572385.5:ENST00000570562.5:ENST00000575889.5	lncRNA	lncRNA	lncRNA	lncRNA	5	70	2	1.88483	2.678315	3.4718	0.0149825	0.00136358	0.107704	0.0336321
chr11	87306405	87306505	4845504	0	+	0.34	(0.32,0.35]	chr11	451889	4	SS5_PROX	SS5_PROX:INTRON	TMEM135	ENSG00000166575.17	ENST00000340353.11:ENST00000305494.6:ENST00000532959.5	protein_coding	protein_coding	protein_coding	protein_coding	2	44	2	2.51061	2.6781499999999996	2.84569	0.0364463	0.0121137	0.138959	0.0962599
chr11	70417423	70417523	4821813	0	+	0.43	(0.408,0.44]	chr11	449633	3	SS5_PROX	SS5_PROX:INTRON	CTTN	ENSG00000085733.16	ENST00000346329.7:ENST00000301843.13:ENST00000376561.7:ENST00000415461.2:ENST00000532334.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	19	299	2	2.48034	2.678065	2.87579	1.8103e-4	4.52427e-6	0.0122079	0.00143706
chr9	128171398	128171497	4357640	0	-	0.545455	(0.515,0.57]	chr9	400262	9	INTRON	INTRON	CIZ1	ENSG00000148337.22	ENST00000651955.1:ENST00000372938.10:ENST00000372954.5:ENST00000538431.5:ENST00000357558.9:ENST00000629610.2:ENST00000372948.7:ENST00000277465.8:ENST00000634901.1:ENST00000415526.5:ENST00000471839.5:ENST00000476727.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	81	2	1.98329	2.678025	3.37276	0.0105419	1.02064e-4	0.0860389	0.00853098
chr12	119853253	119853353	5432032	0	-	0.41	(0.408,0.44]	chr12	519004	26	INTRON	INTRON	CIT	ENSG00000122966.17	ENST00000392521.7:ENST00000261833.11:ENST00000612548.4:ENST00000536325.1	protein_coding	protein_coding	protein_coding	protein_coding	3	52	2	1.94273	2.67798	3.41323	0.0456237	0.00129989	0.149888	0.0333764
chrX	44933384	44933484	7649204	0	+	0.53	(0.515,0.57]	chrX	782726	590	INTRON	INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000675440.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000621147.5:ENST00000475233.1:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	108	2	2.65244	2.67798	2.70352	9.70997e-4	1.82258e-4	0.0283239	0.0117546
chr5	154760081	154760181	2527045	0	+	0.51	(0.476,0.515]	chr5	241610	22	INTRON	INTRON	LARP1	ENSG00000155506.19	ENST00000687700.1:ENST00000336314.9:ENST00000690816.1:ENST00000518297.6:ENST00000517616.5:ENST00000518892.1:ENST00000521577.1:ENST00000519931.5:ENST00000524248.5:ENST00000685946.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	71	2	1.86182	2.677965	3.49411	0.0178986	9.23453e-4	0.106365	0.0278392
chr21	37446156	37446255	7407023	0	+	0.414141	(0.408,0.44]	chr21	754891	154	INTRON	INTRON	DYRK1A	ENSG00000157540.22	ENST00000646523.1:ENST00000647425.1:ENST00000647188.2:ENST00000647504.1:ENST00000644942.1:ENST00000338785.8:ENST00000643624.1:ENST00000643551.1:ENST00000426672.6:ENST00000398960.7:ENST00000646548.1:ENST00000645424.1:ENST00000643854.1:ENST00000455097.6:ENST00000642309.1:ENST00000645774.1:ENST00000398956.2	protein_coding	protein_coding	protein_coding	protein_coding	4	69	2	2.57295	2.6779200000000003	2.78289	0.00640423	0.0022785	0.0694534	0.0437013
chr5	131370451	131370551	2485705	0	+	0.42	(0.408,0.44]	chr5	237134	105	INTRON	INTRON	CDC42SE2	ENSG00000158985.14	ENST00000395246.5:ENST00000505065.2:ENST00000503291.5:ENST00000360515.7	protein_coding	protein_coding	protein_coding	protein_coding	4	69	2	2.57295	2.6779200000000003	2.78289	0.00640423	0.0022785	0.0694534	0.0437013
chr15	58012348	58012448	6187002	0	-	0.3	(0.28,0.32]	chr15	589767	2	SS3_PROX	SS3_PROX:INTRON	ALDH1A2	ENSG00000128918.15	ENST00000537372.5:ENST00000249750.9:ENST00000347587.7:ENST00000430119.6:ENST00000558231.5:ENST00000559517.5:ENST00000559266.5:ENST00000561070.5:ENST00000558595.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	122	2	2.66974	2.67788	2.68602	0.0055712	6.07032e-4	0.0649112	0.0223951
chr4	123093400	123093500	2037347	0	+	0.48	(0.476,0.515]	chr4	202380	23	INTRON	INTRON	SPATA5	ENSG00000145375.9	ENST00000675612.1:ENST00000274008.5:ENST00000422835.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	52	2	2.06491	2.677825	3.29074	0.0304733	0.00272563	0.143385	0.0467523
chr22	21790396	21790495	7560610	0	-	0.343434	(0.32,0.35]	chr22	773370	12	INTRON	INTRON	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	9	144	2	2.08423	2.67776	3.27129	0.00218213	4.56534e-4	0.0435144	0.0196892
chr1	173999011	173999110	587811	0	-	0.464646	(0.44,0.476]	chr1	70758	55	INTRON	INTRON	RC3H1	ENSG00000135870.12	ENST00000367696.7	protein_coding	protein_coding	protein_coding	protein_coding	2	38	2	2.5364	2.67768	2.81896	0.0309324	0.0120766	0.13151	0.0962311
chr1	185067871	185067971	275782	0	+	0.45	(0.44,0.476]	chr1	32263	212	INTRON	INTRON	RNF2	ENSG00000121481.11	ENST00000367509.8:ENST00000498201.1:ENST00000367510.8:ENST00000453650.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	38	2	2.5364	2.67768	2.81896	0.0309324	0.0120766	0.13151	0.0962311
chr12	357332	357431	5254768	0	-	0.474747	(0.44,0.476]	chr12	500016	4	INTRON	INTRON	KDM5A	ENSG00000073614.13	ENST00000399788.7:ENST00000544760.1	protein_coding	protein_coding	protein_coding	protein_coding	2	38	2	2.5364	2.67768	2.81896	0.0309324	0.0120766	0.13151	0.0962311
chr20	5555651	5555750	7311769	0	-	0.474747	(0.44,0.476]	chr20	744510	74	INTRON	INTRON	GPCPD1	ENSG00000125772.14	ENST00000379019.7:ENST00000481038.5:ENST00000418646.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	38	2	2.5364	2.67768	2.81896	0.0309324	0.0120766	0.13151	0.0962311
chr20	57403555	57403655	7288894	0	+	0.46	(0.44,0.476]	chr20	741612	32	INTRON	INTRON	RBM38	ENSG00000132819.17	ENST00000356208.10:ENST00000440234.6:ENST00000342690.4:ENST00000344785.10:ENST00000371219.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	38	2	2.5364	2.67768	2.81896	0.0309324	0.0120766	0.13151	0.0962311
chr1	29172800	29172899	410353	0	-	0.353535	(0.35,0.378]	chr1	49420	43	EXON_MRNA	EXON_MRNA:INTRON	SRSF4	ENSG00000116350.18	ENST00000373795.7:ENST00000691479.1:ENST00000634348.1:ENST00000466448.4:ENST00000605204.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	186	2	2.21459	2.677675	3.14076	0.00159119	3.17876e-5	0.0364566	0.00449975
chr1	30954281	30954381	411761	0	-	0.44	(0.408,0.44]	chr1	49652	3	SS3_PROX	SS3_PROX:INTRON	PUM1	ENSG00000134644.16	ENST00000426105.7:ENST00000373747.7:ENST00000257075.9:ENST00000424085.6:ENST00000525843.5:ENST00000440538.6:ENST00000498419.5:ENST00000373741.8:ENST00000373742.6:ENST00000527498.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	62	2	2.3494	2.677675	3.00595	0.00781452	0.00462504	0.0759016	0.062717
chr1	179150184	179150284	592284	0	-	0.44	(0.408,0.44]	chr1	71074	72	INTRON	INTRON	ABL2	ENSG00000143322.21	ENST00000502732.6:ENST00000367623.8:ENST00000507173.5:ENST00000511413.5:ENST00000668691.1:ENST00000392043.4:ENST00000660584.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	52	2	2.26792	2.67765	3.08738	0.0179973	0.00478231	0.106756	0.0636201
chr16	70240208	70240307	6509961	0	-	0.434343	(0.408,0.44]	chr16	630471	44	INTRON	INTRON	SMG1P7	ENSG00000261556.10	ENST00000565246.7:ENST00000568855.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	3	52	2	2.26792	2.67765	3.08738	0.0179973	0.00478231	0.106756	0.0636201
chr19	24098973	24099072	7044527	0	+	0.434343	(0.408,0.44]	chr19	702396	66	INTRON	INTRON	ZNF254	ENSG00000213096.11	ENST00000613065.4:ENST00000611359.3:ENST00000616028.2:ENST00000594886.5:ENST00000339642.10:ENST00000357002.5:ENST00000595187.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	52	2	2.26792	2.67765	3.08738	0.0179973	0.00478231	0.106756	0.0636201
chr9	83670526	83670626	4272703	0	-	0.41	(0.408,0.44]	chr9	392953	8	INTRON	INTRON	UBQLN1	ENSG00000135018.14	ENST00000376395.9:ENST00000533705.5:ENST00000257468.11	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	52	2	2.26792	2.67765	3.08738	0.0179973	0.00478231	0.106756	0.0636201
chr1	154971915	154972012	559824	0	-	0.484536	(0.476,0.515]	chr1	66658	13	INTRON	INTRON	SHC1	ENSG00000160691.19	ENST00000368450.5:ENST00000368453.8:ENST00000412170.5:ENST00000366442.2	protein_coding	protein_coding	protein_coding	protein_coding	8	129	2	2.41425	2.677555	2.94086	0.00197914	9.2843e-5	0.0404068	0.00806645
chr20	35718780	35718878	7336310	0	-	0.44898	(0.44,0.476]	chr20	747446	16	INTRON	INTRON	RBM39	ENSG00000131051.24	ENST00000253363.11:ENST00000639702.1:ENST00000656873.1:ENST00000463004.5:ENST00000361162.10:ENST00000461283.5:ENST00000403542.6:ENST00000338163.10:ENST00000528062.7:ENST00000429968.5:ENST00000444878.5:ENST00000665058.1:ENST00000492779.5:ENST00000448303.5:ENST00000615771.5:ENST00000490484.7:ENST00000494274.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	39	2	2.20949	2.67754	3.14559	0.0672585	0.00384923	0.183051	0.0562562
chr1	173999309	173999409	587814	0	-	0.48	(0.476,0.515]	chr1	70758	58	INTRON	INTRON	RC3H1	ENSG00000135870.12	ENST00000367696.7	protein_coding	protein_coding	protein_coding	protein_coding	3	51	2	2.10874	2.6775200000000003	3.2463	0.0285608	0.00262374	0.12666	0.0470772
chr10	1000476	1000576	4379118	0	+	0.5	(0.476,0.515]	chr10	403840	4	SS3_PROX	SS3_PROX:INTRON	GTPBP4	ENSG00000107937.19	ENST00000360803.9:ENST00000491635.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	51	2	2.10874	2.6775200000000003	3.2463	0.0285608	0.00262374	0.12666	0.0470772
chr7	155724138	155724238	3452702	0	+	0.34	(0.32,0.35]	chr7	322702	53	INTRON	INTRON	RBM33	ENSG00000184863.11	ENST00000401878.8:ENST00000307403.6:ENST00000440108.5:ENST00000392761.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	81	2	2.2664	2.67752	3.08864	0.0199969	6.64579e-4	0.109608	0.0233423
chr1	96750325	96750425	168227	0	+	0.3	(0.28,0.32]	chr1	18215	264	INTRON	INTRON	PTBP2	ENSG00000117569.19	ENST00000482253.5:ENST00000675735.1:ENST00000609116.5:ENST00000674951.1:ENST00000675080.1:ENST00000426398.3:ENST00000460706.5:ENST00000370197.5:ENST00000370198.5:ENST00000476419.5:ENST00000676292.1:ENST00000676096.1:ENST00000675365.1:ENST00000674579.1:ENST00000675401.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	48	2	2.32871	2.677515	3.02632	0.0581621	0.0071944	0.167723	0.0756118
chr18	21818994	21819064	6880530	0	+	0.314286	(0.28,0.32]	chr18	681940	1	SS3_PROX	SS3_PROX:INTRON	MIB1	ENSG00000101752.13	ENST00000578646.5:ENST00000261537.7:ENST00000577749.5:ENST00000578260.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	48	2	2.32871	2.677515	3.02632	0.0581621	0.0071944	0.167723	0.0756118
chr6	147777939	147778039	2991778	0	+	0.29	(0.28,0.32]	chr6	280177	405	INTRON	INTRON	ENSG00000227681	ENSG00000227681.5	ENST00000427015.1	lncRNA	lncRNA	lncRNA	lncRNA	2	48	2	2.32871	2.677515	3.02632	0.0581621	0.0071944	0.167723	0.0756118
chr5	88274949	88275048	2412122	0	+	0.343434	(0.32,0.35]	chr5	232535	56	EXON_LNCRNA	EXON_LNCRNA:INTRON	TMEM161B-DT	ENSG00000247828.9	ENST00000504922.6:ENST00000661377.2:ENST00000658478.1:ENST00000501869.7:ENST00000688087.1:ENST00000654762.1:ENST00000666577.1:ENST00000658094.1:ENST00000661627.1:ENST00000663476.1:ENST00000669353.1:ENST00000688523.1:ENST00000664546.1:ENST00000688118.1:ENST00000663490.1:ENST00000689901.1:ENST00000653918.1:ENST00000668471.1:ENST00000659093.1:ENST00000504636.2:ENST00000666808.1:ENST00000671394.1:ENST00000662970.2:ENST00000661351.1:ENST00000688398.1:ENST00000660783.1:ENST00000670030.1:ENST00000664462.1:ENST00000659005.2:ENST00000670451.1:ENST00000670873.1:ENST00000501715.6:ENST00000657972.2:ENST00000658611.1:ENST00000692797.1:ENST00000504769.5:ENST00000653898.1:ENST00000667139.1:ENST00000684909.1:ENST00000656152.1:ENST00000659215.1:ENST00000669465.1:ENST00000659938.1:ENST00000507736.2:ENST00000667511.1:ENST00000665926.1:ENST00000513694.2:ENST00000693402.1:ENST00000496733.6:ENST00000510087.6:ENST00000506584.5:ENST00000669796.1:ENST00000512724.5:ENST00000668037.1:ENST00000657617.1:ENST00000686930.1:ENST00000667127.1:ENST00000685962.1	lncRNA	lncRNA	lncRNA	lncRNA	12	133	2	1.29206	2.6775	4.06294	0.0308236	1.45551e-4	0.143385	0.0110245
chr12	110293020	110293119	5226217	0	+	0.393939	(0.378,0.408]	chr12	495240	5	INTRON	INTRON	ATP2A2	ENSG00000174437.18	ENST00000552636.2:ENST00000308664.10:ENST00000539276.7:ENST00000377685.9:ENST00000548169.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	19	233	2	1.93982	2.677495	3.41517	7.20598e-4	3.59461e-5	0.0245156	0.00508574
chr14	37156081	37156181	5877848	0	-	0.49	(0.476,0.515]	chr14	558013	2807	INTRON	INTRON	SLC25A21	ENSG00000183032.12	ENST00000331299.6:ENST00000555449.5:ENST00000557611.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	51	2	2.16377	2.67748	3.19119	0.0243026	0.00325748	0.12011	0.0524329
chr1	207779836	207779936	305189	0	+	0.31	(0.28,0.32]	chr1	35129	37	INTRON	INTRON	CD46	ENSG00000117335.21	ENST00000695779.1:ENST00000695777.1:ENST00000695778.1:ENST00000496723.2:ENST00000695782.1:ENST00000695781.1:ENST00000695780.1:ENST00000636114.2:ENST00000367042.6:ENST00000322875.8:ENST00000322918.9:ENST00000354848.5:ENST00000357714.5:ENST00000358170.6:ENST00000367041.5:ENST00000367047.5:ENST00000695783.1:ENST00000695784.1:ENST00000469535.5:ENST00000360212.6:ENST00000480003.5:ENST00000695786.1:ENST00000490278.2:ENST00000488596.5:ENST00000471987.1:ENST00000462968.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	116	2	1.59385	2.67743	3.76101	0.0190086	6.8623e-4	0.118802	0.0240041
chr7	158907185	158907284	3456648	0	+	0.424242	(0.408,0.44]	chr7	323196	7	INTRON	INTRON	DYNC2I1	ENSG00000126870.16	ENST00000407559.8:ENST00000444851.5:ENST00000467220.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	83	2	2.2644	2.677385	3.09037	0.00768371	5.47766e-4	0.0753803	0.0212924
chr1	27469900	27470000	406562	0	-	0.39	(0.378,0.408]	chr1	48986	406	INTRON	INTRON	WASF2	ENSG00000158195.11	ENST00000618852.5:ENST00000536657.1	protein_coding	protein_coding	protein_coding	protein_coding	7	90	2	1.23177	2.67728	4.12279	0.0747101	3.95714e-5	0.192652	0.00509892
chr19	15330535	15330635	7147386	0	-	0.51	(0.476,0.515]	chr19	721965	502	INTRON	INTRON	BRD4	ENSG00000141867.19	ENST00000679869.1:ENST00000360016.9:ENST00000594841.5:ENST00000597315.5:ENST00000601941.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	156	2	2.24075	2.6772650000000002	3.11378	0.00160355	3.20961e-5	0.0364977	0.00452256
chr1	15906923	15907023	35257	0	+	0.47	(0.44,0.476]	chr1	4272	299	INTRON	INTRON	SPEN	ENSG00000065526.12	ENST00000673875.1:ENST00000375759.8:ENST00000438066.1:ENST00000442985.1	protein_coding	protein_coding	protein_coding	protein_coding	6	99	2	2.61896	2.677205	2.73545	0.0017827	7.908e-4	0.0379201	0.0258324
chr6	15404327	15404427	2824531	0	+	0.35	(0.32,0.35]	chr6	265198	297	INTRON	INTRON	JARID2	ENSG00000008083.14	ENST00000341776.7:ENST00000397311.4	protein_coding	protein_coding	protein_coding	protein_coding	3	61	2	1.77704	2.677175	3.57731	0.0719969	7.67492e-4	0.187322	0.0254532
chr10	68446713	68446813	4639513	0	-	0.32	(0.28,0.32]	chr10	426703	3	SS3_PROX	SS3_PROX:INTRON	DNA2	ENSG00000138346.15	ENST00000358410.8:ENST00000551118.6:ENST00000399179.6:ENST00000399180.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	48	2	2.67453	2.6771399999999996	2.67975	0.0252505	0.021289	0.123318	0.12011
chr2	38591948	38592048	1099668	0	-	0.32	(0.28,0.32]	chr2	117956	3	SS3_PROX	SS3_PROX:INTRON	HNRNPLL	ENSG00000143889.16	ENST00000449105.8:ENST00000409636.5:ENST00000358367.8:ENST00000608859.5:ENST00000378915.7:ENST00000409328.5:ENST00000410076.5:ENST00000425682.1:ENST00000498516.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	48	2	2.67453	2.6771399999999996	2.67975	0.0252505	0.021289	0.123318	0.12011
chr15	92897967	92898048	6103661	0	+	0.37037	(0.35,0.378]	chr15	581377	4	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:INTRON	CHASERR:ENSG00000279765	ENSG00000272888.8:ENSG00000279765.3	ENST00000653163.1:ENST00000557682.6:ENST00000556895.5:ENST00000629685.2:ENST00000554133.5:ENST00000630790.1:ENST00000555520.1:ENST00000692976.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	7	129	2	2.26428	2.67712	3.08996	0.00831504	4.34591e-5	0.0774402	0.00532088
chr9	136727683	136727780	4375404	0	-	0.494845	(0.476,0.515]	chr9	403179	2	SS5_PROX	SS5_PROX:INTRON	SNHG7	ENSG00000233016.8	ENST00000414282.5:ENST00000685573.1:ENST00000686963.1:ENST00000653276.1:ENST00000416970.5:ENST00000668354.1:ENST00000447221.1	lncRNA	lncRNA	lncRNA	lncRNA	6	116	2	1.96833	2.677035	3.38574	0.0195007	3.38135e-5	0.119967	0.00490059
chr19	1225001	1225098	6994399	0	+	0.659794	(0.57,1]	chr19	692934	14	UTR3	UTR3:EXON_MRNA:INTRON	STK11	ENSG00000118046.17	ENST00000326873.12:ENST00000589152.5:ENST00000585465.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	28	2	2.56996	2.677025	2.78409	0.0116033	0.00499145	0.0889104	0.0646039
chr8	38244259	38244357	3735656	0	+	0.5	(0.476,0.515]	chr8	347117	15	INTRON	INTRON	DDHD2	ENSG00000085788.14	ENST00000397166.7:ENST00000520272.6:ENST00000527415.5:ENST00000532106.1:ENST00000528888.5:ENST00000531344.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	61	2	2.25138	2.67701	3.10264	0.00692374	0.00543163	0.0753208	0.0645052
chr7	105548910	105549010	3375859	0	+	0.33	(0.32,0.35]	chr7	316077	2	SS5_PROX	SS5_PROX:INTRON	RINT1	ENSG00000135249.8	ENST00000257700.7:ENST00000497979.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	116	2	2.53881	2.677005	2.8152	0.00317745	6.37027e-4	0.0503705	0.0228285
chr11	119002621	119002719	4874020	0	+	0.326531	(0.32,0.35]	chr11	455385	4	INTRON	INTRON	CENATAC	ENSG00000186166.9	ENST00000334418.6:ENST00000524670.5:ENST00000526463.5:ENST00000532132.5:ENST00000580556.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	44	2	2.4458	2.67683	2.90786	0.0425977	0.00993008	0.148082	0.0877296
chr2	15372822	15372921	1071250	0	-	0.343434	(0.32,0.35]	chr2	114303	58	INTRON	INTRON	NBAS	ENSG00000151779.13	ENST00000281513.10:ENST00000442506.5	protein_coding	protein_coding	protein_coding	protein_coding	2	44	2	2.4458	2.67683	2.90786	0.0425977	0.00993008	0.148082	0.0877296
chr6	37957295	37957395	2858409	0	+	0.35	(0.32,0.35]	chr6	270231	269	INTRON	INTRON	ZFAND3	ENSG00000156639.12	ENST00000287218.9:ENST00000373391.6:ENST00000474522.5:ENST00000373389.5	protein_coding	protein_coding	protein_coding	protein_coding	2	44	2	2.4458	2.67683	2.90786	0.0425977	0.00993008	0.148082	0.0877296
chr1	180386122	180386222	594665	0	-	0.45	(0.44,0.476]	chr1	71180	592	INTRON	INTRON	ACBD6	ENSG00000230124.8	ENST00000645415.1:ENST00000642319.1:ENST00000496993.5:ENST00000475338.2:ENST00000367595.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	39	2	2.49112	2.6767149999999997	2.86231	0.0315968	0.012214	0.144381	0.0910127
chr2	235539035	235539135	1041787	0	+	0.47	(0.44,0.476]	chr2	111222	141	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1:ENST00000402604.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	39	2	2.49112	2.6767149999999997	2.86231	0.0315968	0.012214	0.144381	0.0910127
chr6	33301365	33301463	3082684	0	-	0.469388	(0.44,0.476]	chr6	288364	18	UTR3	UTR3:EXON_MRNA	TAPBP	ENSG00000231925.13	ENST00000434618.7	protein_coding	protein_coding	protein_coding	protein_coding	2	39	2	2.49112	2.6767149999999997	2.86231	0.0315968	0.012214	0.144381	0.0910127
chr20	49287951	49288049	7284701	0	+	0.408163	(0.378,0.408]	chr20	741065	58	INTRON	INTRON	ZFAS1	ENSG00000177410.13	ENST00000371743.8:ENST00000417721.5:ENST00000441722.5:ENST00000450535.5:ENST00000458653.5:ENST00000428008.6:ENST00000620594.2:ENST00000652916.1:ENST00000326677.9:ENST00000659056.1	lncRNA	lncRNA	lncRNA	lncRNA	6	113	2	2.22859	2.676705	3.12482	0.00763308	1.7345e-4	0.0777238	0.0120842
chr15	63825725	63825825	6200823	0	-	0.35	(0.32,0.35]	chr15	591445	448	INTRON	INTRON	HERC1	ENSG00000103657.14	ENST00000443617.7:ENST00000561400.1:ENST00000559886.1:ENST00000558532.1:ENST00000560462.1:ENST00000560316.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	44	2	2.57263	2.67668	2.78073	0.0312297	0.01481	0.13151	0.106702
chr17	46337950	46338047	6785849	0	-	0.587629	(0.57,1]	chr17	669307	7	UTR3	UTR3:EXON_MRNA:INTRON	ARL17B	ENSG00000228696.10	ENST00000570618.5:ENST00000656849.1:ENST00000434041.6:ENST00000572991.5:ENST00000622877.4:ENST00000575698.5:ENST00000575960.5:ENST00000571246.5:ENST00000450673.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	28	2	2.17026	2.67663	3.183	0.0220522	0.00254356	0.123836	0.0448135
chr19	52287148	52287246	7094868	0	+	0.602041	(0.57,1]	chr19	711286	34	INTRON	INTRON	ZNF766	ENSG00000196214.11	ENST00000439461.6:ENST00000593703.1:ENST00000599581.5:ENST00000593612.1:ENST00000595000.5:ENST00000595149.5:ENST00000600821.5	protein_coding	protein_coding	protein_coding	protein_coding	3	28	2	2.17026	2.67663	3.183	0.0220522	0.00254356	0.123836	0.0448135
chr4	66241	66341	1905419	0	+	0.22	[0,0.28]	chr4	191003	57	INTRON	INTRON	ZNF595	ENSG00000272602.6	ENST00000608255.2:ENST00000609518.5:ENST00000509152.3:ENST00000610261.6	protein_coding	protein_coding	protein_coding	protein_coding	9	213	2	2.59882	2.676585	2.75435	0.00101683	5.96657e-4	0.029231300000000002	0.0222353
chr19	18910366	18910466	7153277	0	-	0.52	(0.515,0.57]	chr19	722985	4	SS5_PROX	SS5_PROX:INTRON	COPE	ENSG00000105669.14	ENST00000262812.9:ENST00000349893.8:ENST00000600932.5:ENST00000598969.5:ENST00000351079.8:ENST00000593827.1:ENST00000597026.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	107	2	2.47855	2.67652	2.87449	5.02001e-4	4.10541e-4	0.020217099999999998	0.0186083
chr13	32645155	32645254	5465895	0	+	0.494949	(0.476,0.515]	chr13	523717	582	INTRON	INTRON	PDS5B	ENSG00000083642.19	ENST00000315596.15:ENST00000482955.5:ENST00000498550.5:ENST00000450460.5:ENST00000493653.1:ENST00000466078.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	38	2	2.40608	2.6765	2.94692	0.0425709	0.00794331	0.148082	0.0797304
chr3	179358240	179358339	1567035	0	+	0.515152	(0.476,0.515]	chr3	162075	59	INTRON	INTRON	MFN1	ENSG00000171109.19	ENST00000471841.6:ENST00000357390.8:ENST00000467174.6:ENST00000263969.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	38	2	2.40608	2.6765	2.94692	0.0425709	0.00794331	0.148082	0.0797304
chr14	51255205	51255303	5716433	0	+	0.22449	[0,0.28]	chr14	542907	8	UTR3	UTR3:EXON_MRNA	TMX1	ENSG00000139921.13	ENST00000457354.7:ENST00000556683.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	74	2	2.17149	2.6764349999999997	3.18138	0.0308079	0.00487606	0.13151	0.0640618
chr2	181002835	181002935	936194	0	+	0.41	(0.408,0.44]	chr2	102627	129	INTRON	INTRON	UBE2E3	ENSG00000170035.16	ENST00000602303.5:ENST00000602959.5:ENST00000602479.5:ENST00000392415.6:ENST00000602291.5:ENST00000410062.9:ENST00000602499.5:ENST00000602710.5:ENST00000602762.5:ENST00000602888.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	41	2	2.2957	2.676375	3.05705	0.0516458	0.00658331	0.176696	0.0701901
chr2	32399768	32399867	731209	0	+	0.363636	(0.35,0.378]	chr2	84304	38	INTRON	INTRON	BIRC6	ENSG00000115760.15	ENST00000421745.7:ENST00000648282.1:ENST00000466527.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	42	2	2.57049	2.676305	2.78212	0.0262669	0.0168532	0.133676	0.103549
chr8	129522577	129522676	4060508	0	-	0.323232	(0.32,0.35]	chr8	369648	120	INTRON	INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1:ENST00000676273.1:ENST00000667643.1:ENST00000668791.1:ENST00000663716.1:ENST00000663572.1:ENST00000676148.1:ENST00000667962.1:ENST00000674877.1:ENST00000675316.1:ENST00000674656.1:ENST00000446592.7:ENST00000667341.1:ENST00000675186.1:ENST00000652971.1:ENST00000661447.1:ENST00000674863.1:ENST00000675498.1:ENST00000675527.1:ENST00000676108.1:ENST00000657647.1:ENST00000675589.1:ENST00000675913.1:ENST00000675109.1:ENST00000671632.1:ENST00000671311.1:ENST00000676099.1:ENST00000660652.1:ENST00000675522.1:ENST00000675183.1:ENST00000658861.1:ENST00000663991.1:ENST00000675044.1:ENST00000675435.1:ENST00000674639.1:ENST00000676069.1:ENST00000675532.1:ENST00000674762.1:ENST00000523151.6:ENST00000675948.1:ENST00000665364.1:ENST00000657251.1:ENST00000675166.1:ENST00000674883.1:ENST00000675867.1:ENST00000674580.1:ENST00000675393.1:ENST00000520048.1:ENST00000674906.1:ENST00000676030.1:ENST00000670588.1:ENST00000675072.1:ENST00000664936.1:ENST00000652914.1:ENST00000657069.1	lncRNA	lncRNA	lncRNA	lncRNA	9	163	2	2.63528	2.67626	2.71724	0.00152305	1.78686e-4	0.0353936	0.0116621
chr1	88885363	88885463	499452	0	-	0.51	(0.476,0.515]	chr1	59244	209	INTRON	INTRON	GTF2B	ENSG00000137947.12	ENST00000370500.10:ENST00000448623.5:ENST00000494819.5:ENST00000418217.1:ENST00000486078.1:ENST00000471296.5:ENST00000471471.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	38	2	2.65268	2.6761749999999997	2.69967	0.0201975	0.0195838	0.121243	0.109483
chr17	50134234	50134333	6794417	0	-	0.484848	(0.476,0.515]	chr17	670453	6	UTR3	UTR3:EXON_MRNA	PPP1R9B	ENSG00000108819.11	ENST00000612501.2	protein_coding	protein_coding	protein_coding	protein_coding	2	38	2	2.65268	2.6761749999999997	2.69967	0.0201975	0.0195838	0.121243	0.109483
chr3	57848968	57849063	1436566	0	+	0.505263	(0.476,0.515]	chr3	151685	14	INTRON	INTRON	SLMAP	ENSG00000163681.16	ENST00000295951.7:ENST00000659926.1:ENST00000659705.1:ENST00000671191.1:ENST00000667800.1:ENST00000655012.1:ENST00000428312.6:ENST00000664084.1:ENST00000657480.1:ENST00000467901.1:ENST00000295952.7:ENST00000383718.7:ENST00000449503.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	38	2	2.65268	2.6761749999999997	2.69967	0.0201975	0.0195838	0.121243	0.109483
chr4	1886203	1886303	1910718	0	+	0.48	(0.476,0.515]	chr4	191707	143	INTRON	INTRON	NSD2	ENSG00000109685.19	ENST00000508803.6:ENST00000507820.5:ENST00000508355.5:ENST00000514045.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	38	2	2.65268	2.6761749999999997	2.69967	0.0201975	0.0195838	0.121243	0.109483
chr10	35337707	35337806	4424514	0	+	0.40404	(0.378,0.408]	chr10	407899	1	INTRON	INTRON	CCNY	ENSG00000108100.18	ENST00000374706.5:ENST00000490012.6:ENST00000493157.6:ENST00000374704.8:ENST00000265375.13:ENST00000339497.7:ENST00000492478.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	150	2	2.43471	2.67617	2.91763	0.00112896	1.09828e-4	0.0307488	0.0088711
chr17	82577554	82577653	6693190	0	+	0.484848	(0.476,0.515]	chr17	654652	53	INTRON	INTRON	FOXK2	ENSG00000141568.21	ENST00000473637.6:ENST00000335255.10:ENST00000531030.5:ENST00000526383.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	68	2	2.54157	2.676165	2.81076	0.00697457	0.00203568	0.0718189	0.0417667
chr1	235267648	235267748	663257	0	-	0.46	(0.44,0.476]	chr1	78552	65	INTRON	INTRON	ARID4B	ENSG00000054267.22	ENST00000349213.7:ENST00000366603.6:ENST00000264183.9:ENST00000421364.5:ENST00000491632.5:ENST00000418304.1:ENST00000466653.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	38	2	2.46135	2.67591	2.89047	0.0374637	0.00955699	0.140008	0.0863913
chr11	3707656	3707754	4894253	0	-	0.459184	(0.44,0.476]	chr11	458813	11	EXON_LNCRNA	EXON_LNCRNA:INTRON	NUP98:ENSG00000289468	ENSG00000110713.17:ENSG00000289468.1	ENST00000359171.8:ENST00000324932.12:ENST00000650171.1:ENST00000355260.7:ENST00000689488.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:nonsense_mediated_decay:lncRNA	2	38	2	2.46135	2.67591	2.89047	0.0374637	0.00955699	0.140008	0.0863913
chr12	121526277	121526376	5438667	0	-	0.474747	(0.44,0.476]	chr12	520031	16	INTRON	INTRON	KDM2B	ENSG00000089094.20	ENST00000377071.9:ENST00000377069.8:ENST00000611216.4:ENST00000538503.5:ENST00000543025.5:ENST00000538046.6:ENST00000446152.6:ENST00000538379.5:ENST00000545022.5:ENST00000541318.1:ENST00000543852.5:ENST00000541511.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	38	2	2.46135	2.67591	2.89047	0.0374637	0.00955699	0.140008	0.0863913
chr16	67786859	67786959	6505486	0	-	0.45	(0.44,0.476]	chr16	629654	144	INTRON	INTRON	RANBP10	ENSG00000141084.12	ENST00000317506.8:ENST00000448631.6:ENST00000602506.5:ENST00000602677.5:ENST00000602525.5:ENST00000602638.5:ENST00000602815.5:ENST00000602887.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	38	2	2.46135	2.67591	2.89047	0.0374637	0.00955699	0.140008	0.0863913
chr1	61161025	61161125	128182	0	+	0.47	(0.44,0.476]	chr1	14778	281	INTRON	INTRON	NFIA	ENSG00000162599.17	ENST00000371191.5:ENST00000664495.1:ENST00000476646.5:ENST00000407417.7:ENST00000479364.1:ENST00000371189.8:ENST00000670151.1:ENST00000664149.1:ENST00000662015.1:ENST00000403491.8:ENST00000371187.7:ENST00000485903.6:ENST00000371185.6:ENST00000371184.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	51	2	2.27304	2.67583	3.07862	0.0158915	0.0060153	0.109464	0.0674604
chr19	2328216	2328301	7115843	0	-	0.458824	(0.44,0.476]	chr19	715325	4	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	LSM7	ENSG00000130332.15	ENST00000587502.2:ENST00000585409.2:ENST00000252622.15:ENST00000585395.6:ENST00000591745.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	51	2	2.27304	2.67583	3.07862	0.0158915	0.0060153	0.109464	0.0674604
chr3	5176193	5176292	1354123	0	+	0.464646	(0.44,0.476]	chr3	142391	14	INTRON	INTRON	ARL8B	ENSG00000134108.14	ENST00000256496.8:ENST00000455168.5:ENST00000419534.2:ENST00000468010.1:ENST00000476343.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	82	2	2.53696	2.67579	2.81462	0.00247064	0.00204135	0.0446195	0.041855
chr11	47983107	47983207	4789244	0	+	0.46	(0.44,0.476]	chr11	443265	17	INTRON	INTRON	PTPRJ	ENSG00000149177.14	ENST00000418331.7:ENST00000440289.6:ENST00000527952.1:ENST00000534219.5	protein_coding	protein_coding	protein_coding	protein_coding	2	38	2	2.60774	2.67573	2.74372	0.0255874	0.0153007	0.120269	0.108569
chr15	101199448	101199547	6269286	0	-	0.474747	(0.44,0.476]	chr15	597935	100	INTRON	INTRON	CHSY1	ENSG00000131873.7	ENST00000254190.4:ENST00000543813.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	38	2	2.60774	2.67573	2.74372	0.0255874	0.0153007	0.120269	0.108569
chr3	47836398	47836497	1420313	0	+	0.474747	(0.44,0.476]	chr3	149238	54	INTRON	INTRON	DHX30	ENSG00000132153.15	ENST00000395745.6:ENST00000445061.6:ENST00000441384.5:ENST00000348968.8:ENST00000446256.6:ENST00000619982.4:ENST00000457607.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	38	2	2.60774	2.67573	2.74372	0.0255874	0.0153007	0.120269	0.108569
chr12	110397350	110397449	5409135	0	-	0.535354	(0.515,0.57]	chr12	516463	5	INTRON	INTRON	ANAPC7:ENSG00000258210	ENSG00000196510.14:ENSG00000258210.1	ENST00000455511.9:ENST00000450008.3:ENST00000552170.2:ENST00000550231.1:ENST00000464697.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay	9	123	2	2.5483	2.67567	2.80304	4.26839e-4	1.68851e-4	0.0189958	0.0112811
chr7	30580099	30580194	3513289	0	-	0.347368	(0.32,0.35]	chr7	327599	4	INTRON	INTRON	GARS1-DT	ENSG00000196295.13	ENST00000426529.6:ENST00000656284.1:ENST00000660767.1:ENST00000584199.5:ENST00000667338.1:ENST00000581794.6:ENST00000581665.6:ENST00000663944.1:ENST00000584372.5:ENST00000582733.5:ENST00000667129.1:ENST00000584023.2:ENST00000579174.5:ENST00000689508.1:ENST00000580440.7:ENST00000454922.6:ENST00000667137.1:ENST00000657049.1:ENST00000578994.5:ENST00000583664.5:ENST00000582549.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	4	73	2	1.83315	2.675615	3.51808	0.0313348	0.00151238	0.144381	0.0352794
chr19	5665500	5665597	7005742	0	+	0.443299	(0.44,0.476]	chr19	695032	12	EXON_MRNA	EXON_MRNA:INTRON	SAFB	ENSG00000160633.13	ENST00000589863.5:ENST00000588852.2:ENST00000292123.9:ENST00000592224.5:ENST00000454510.5:ENST00000591991.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	14	201	2	2.34526	2.6756	3.00594	1.68228e-4	1.0309e-4	0.0112487	0.00915599
chr21	14759346	14759445	7430184	0	-	0.313131	(0.28,0.32]	chr21	757888	49	INTRON	INTRON	ENSG00000232884	ENSG00000232884.10	ENST00000673788.1:ENST00000674136.1	lncRNA	lncRNA	lncRNA	lncRNA	3	66	2	2.57195	2.67556	2.77917	0.0331711	0.00285651	0.133994	0.0494641
chr8	67206201	67206299	3962408	0	-	0.510204	(0.476,0.515]	chr8	363559	10	INTRON	INTRON	ARFGEF1	ENSG00000066777.9	ENST00000520381.5:ENST00000518789.5:ENST00000262215.8:ENST00000522878.5:ENST00000518230.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	51	2	2.05154	2.675465	3.29939	0.0336015	0.00211868	0.134145	0.0425644
chr16	24735382	24735481	6329270	0	+	0.353535	(0.35,0.378]	chr16	605933	47	INTRON	INTRON	TNRC6A	ENSG00000090905.19	ENST00000566108.2:ENST00000395799.8:ENST00000315183.11:ENST00000562829.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	90	2	2.63153	2.67543	2.71933	0.00562761	9.31518e-4	0.0653997	0.0278746
chr22	40197232	40197332	7518377	0	+	0.49	(0.476,0.515]	chr22	768108	187	INTRON	INTRON	TNRC6B	ENSG00000100354.21	ENST00000301923.13:ENST00000402203.5:ENST00000454349.7:ENST00000489500.1:ENST00000335727.13	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	51	2	2.21677	2.6753299999999998	3.13389	0.0207026	0.00405473	0.110999	0.0578376
chr11	47529665	47529764	4950168	0	-	0.535354	(0.515,0.57]	chr11	464246	50	INTRON	INTRON	CELF1	ENSG00000149187.19	ENST00000310513.10:ENST00000687097.1:ENST00000531165.5:ENST00000530151.5:ENST00000525841.5:ENST00000526419.1	protein_coding	protein_coding	protein_coding	protein_coding	3	44	2	2.51561	2.67531	2.83501	0.0117686	0.00635044	0.0894475	0.0723103
chr17	29116042	29116141	6746740	0	-	0.545455	(0.515,0.57]	chr17	663109	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MYO18A	ENSG00000196535.19	ENST00000527372.7:ENST00000531253.5:ENST00000533112.5:ENST00000530254.6:ENST00000588791.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	44	2	2.51561	2.67531	2.83501	0.0117686	0.00635044	0.0894475	0.0723103
chr19	52885351	52885450	7208753	0	-	0.535354	(0.515,0.57]	chr19	731657	30	INTRON	INTRON	ZNF320	ENSG00000182986.15	ENST00000673631.1:ENST00000594408.3:ENST00000391781.6:ENST00000600930.1:ENST00000682928.1:ENST00000595635.5:ENST00000597091.5:ENST00000593618.5:ENST00000594741.5:ENST00000597265.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	44	2	2.51561	2.67531	2.83501	0.0117686	0.00635044	0.0894475	0.0723103
chr7	155308299	155308358	3451871	0	+	0.288136	(0.28,0.32]	chr7	322636	2	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	INSIG1	ENSG00000186480.13	ENST00000344756.8:ENST00000340368.9:ENST00000342407.5:ENST00000476756.1	protein_coding	protein_coding	protein_coding	protein_coding	4	89	2	2.55521	2.67531	2.79541	0.0067419	0.00376367	0.0739405	0.0539127
chr14	21261310	21261409	5835086	0	-	0.363636	(0.35,0.378]	chr14	554465	64	INTRON	INTRON	HNRNPC	ENSG00000092199.19	ENST00000336053.10:ENST00000553300.6:ENST00000554969.5:ENST00000556142.5:ENST00000554455.5:ENST00000430246.6:ENST00000553753.5:ENST00000555309.5:ENST00000555914.5:ENST00000557442.5:ENST00000556628.5:ENST00000556513.5:ENST00000555883.5:ENST00000557201.5:ENST00000556897.5:ENST00000420743.6:ENST00000554539.5:ENST00000554383.5:ENST00000555215.5:ENST00000555137.5:ENST00000554891.5:ENST00000556226.5:ENST00000555176.5:ENST00000553614.5:ENST00000557336.1:ENST00000557768.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	86	2	1.50939	2.675295	3.8412	0.0423993	1.97447e-4	0.148082	0.0122531
chr21	37402679	37402779	7406581	0	+	0.35	(0.32,0.35]	chr21	754850	272	INTRON	INTRON	DYRK1A	ENSG00000157540.22	ENST00000646523.1:ENST00000647425.1:ENST00000647188.2:ENST00000647504.1:ENST00000644942.1:ENST00000338785.8:ENST00000643624.1:ENST00000643551.1:ENST00000426672.6:ENST00000398960.7	protein_coding	protein_coding	protein_coding	protein_coding	4	72	2	1.93031	2.6752849999999997	3.42026	0.0231421	0.00219805	0.126939	0.0417893
chr1	88704513	88704613	155971	0	+	0.31	(0.28,0.32]	chr1	17045	195	INTRON	INTRON	PKN2	ENSG00000065243.20	ENST00000316005.11:ENST00000370521.8:ENST00000370513.9	protein_coding	protein_coding	protein_coding	protein_coding	3	65	2	2.1895	2.675255	3.16101	0.0227063	0.0061861	0.124921	0.0677395
chr10	70692839	70692939	4447527	0	+	0.43	(0.408,0.44]	chr10	410366	175	INTRON	INTRON	ADAMTS14	ENSG00000138316.11	ENST00000373207.2:ENST00000373208.5	protein_coding	protein_coding	protein_coding	protein_coding	2	40	2	2.3975	2.67523	2.95296	0.040266	0.00929354	0.161534	0.0817766
chr16	18789396	18789470	6456676	0	-	0.432432	(0.408,0.44]	chr16	622533	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPS15A	ENSG00000134419.15	ENST00000322989.8:ENST00000572008.5:ENST00000563390.5:ENST00000574723.5:ENST00000576008.5:ENST00000562935.5:ENST00000569365.6:ENST00000565420.5:ENST00000573554.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	40	2	2.3975	2.67523	2.95296	0.040266	0.00929354	0.161534	0.0817766
chr20	17964328	17964427	7320527	0	-	0.343434	(0.32,0.35]	chr20	745337	15	INTRON	INTRON	SNX5	ENSG00000089006.17	ENST00000377768.7:ENST00000490175.5:ENST00000377759.9:ENST00000431277.5:ENST00000419004.2:ENST00000474883.5:ENST00000469704.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	59	2	2.4053	2.6752000000000002	2.9451	0.011051	0.0108284	0.0920575	0.0873897
chr8	105404493	105404593	3838102	0	+	0.34	(0.32,0.35]	chr8	354041	162	INTRON	INTRON	ZFPM2	ENSG00000169946.14	ENST00000518180.1:ENST00000407775.7:ENST00000520492.5:ENST00000520027.5:ENST00000524235.5:ENST00000511341.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	59	2	2.4053	2.6752000000000002	2.9451	0.011051	0.0108284	0.0920575	0.0873897
chr7	156674685	156674785	3685803	0	-	0.23	[0,0.28]	chr7	341967	50	INTRON	INTRON	LMBR1	ENSG00000105983.23	ENST00000430825.3	protein_coding	processed_transcript	protein_coding	processed_transcript	8	190	2	2.4459	2.675195	2.90449	0.00219698	6.06161e-4	0.0417893	0.0223951
chr8	42048037	42048135	3941267	0	-	0.244898	[0,0.28]	chr8	361224	23	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	KAT6A	ENSG00000083168.11	ENST00000406337.6:ENST00000265713.8:ENST00000396930.4:ENST00000648335.1:ENST00000649827.1:ENST00000485568.5:ENST00000647809.1:ENST00000648030.1:ENST00000650356.1:ENST00000470574.2:ENST00000426524.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	54	2	2.44242	2.675195	2.90797	0.0491024	0.0118539	0.155269	0.0962115
chr22	49819175	49819272	7603139	0	-	0.536082	(0.515,0.57]	chr22	778659	4	INTRON	INTRON	BRD1	ENSG00000100425.19	ENST00000404760.6:ENST00000404034.5:ENST00000216267.12:ENST00000438393.5:ENST00000457780.3:ENST00000459821.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	45	2	1.8707	2.675145	3.47959	0.0523213	8.38022e-4	0.160182	0.0263691
chr18	59333333	59333422	6980774	0	-	0.191011	[0,0.28]	chr18	690729	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	LMAN1	ENSG00000074695.6	ENST00000251047.6:ENST00000587918.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	54	2	2.54624	2.6751	2.80396	0.0388449	0.0161429	0.143072	0.109464
chr1	182848132	182848232	273065	0	+	0.35	(0.32,0.35]	chr1	31871	43	INTRON	INTRON	DHX9	ENSG00000135829.17	ENST00000367549.4:ENST00000483416.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	71	2	2.18777	2.67507	3.16237	0.00951422	0.00550276	0.0863913	0.0648867
chr8	129544438	129544538	4060727	0	-	0.33	(0.32,0.35]	chr8	369648	339	INTRON	INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1:ENST00000676273.1:ENST00000667643.1:ENST00000668791.1:ENST00000663716.1:ENST00000663572.1:ENST00000676148.1:ENST00000667962.1:ENST00000674877.1:ENST00000675316.1:ENST00000674656.1:ENST00000446592.7:ENST00000667341.1:ENST00000675186.1:ENST00000652971.1:ENST00000661447.1:ENST00000674863.1:ENST00000675498.1:ENST00000675527.1:ENST00000676108.1:ENST00000657647.1:ENST00000675589.1:ENST00000675913.1:ENST00000675109.1:ENST00000671632.1:ENST00000671311.1:ENST00000676099.1:ENST00000660652.1:ENST00000675522.1:ENST00000675183.1:ENST00000658861.1:ENST00000663991.1:ENST00000675044.1:ENST00000675435.1:ENST00000674639.1:ENST00000676069.1:ENST00000675532.1:ENST00000674762.1:ENST00000523151.6:ENST00000675948.1:ENST00000665364.1:ENST00000657251.1:ENST00000675166.1:ENST00000674883.1:ENST00000675867.1:ENST00000674580.1:ENST00000675393.1:ENST00000520048.1:ENST00000674906.1:ENST00000676030.1:ENST00000670588.1:ENST00000675072.1:ENST00000664936.1:ENST00000652914.1:ENST00000657069.1	lncRNA	lncRNA	lncRNA	lncRNA	4	71	2	2.18777	2.67507	3.16237	0.00951422	0.00550276	0.0863913	0.0648867
chr19	45727170	45727269	7193151	0	-	0.484848	(0.476,0.515]	chr19	728468	38	INTRON	INTRON	FBXO46	ENSG00000177051.6	ENST00000317683.4	protein_coding	protein_coding	protein_coding	protein_coding	3	51	2	2.19809	2.675055	3.15202	0.020317	0.00455841	0.121522	0.0595107
chr5	66030034	66030134	2371899	0	+	0.5	(0.476,0.515]	chr5	228560	13	INTRON	INTRON	ERBIN	ENSG00000112851.15	ENST00000380943.6:ENST00000416865.6:ENST00000380935.5:ENST00000284037.10:ENST00000380938.6:ENST00000511297.5:ENST00000506030.5:ENST00000508515.1	protein_coding	protein_coding	protein_coding	protein_coding	3	51	2	2.19809	2.675055	3.15202	0.020317	0.00455841	0.121522	0.0595107
chr12	125028869	125028967	5245423	0	+	0.346939	(0.32,0.35]	chr12	498729	35	UTR3	UTR3:EXON_MRNA	BRI3BP	ENSG00000184992.13	ENST00000341446.9:ENST00000671775.2	protein_coding	protein_coding	protein_coding	protein_coding	3	67	2	2.56618	2.675045	2.78391	0.0274185	0.00347285	0.136498	0.052042
chr12	62385490	62385588	5150822	0	+	0.316327	(0.28,0.32]	chr12	487385	8	INTRON	INTRON	USP15	ENSG00000135655.16	ENST00000353364.7:ENST00000280377.10:ENST00000549268.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	87	2	2.53648	2.67491	2.81334	0.00925866	0.00248627	0.0817766	0.0461207
chr10	27146555	27146652	4586211	0	-	0.463918	(0.44,0.476]	chr10	422770	11	UTR3	UTR3:EXON_MRNA:INTRON	YME1L1	ENSG00000136758.20	ENST00000376016.8:ENST00000613434.4:ENST00000326799.7:ENST00000491542.6:ENST00000427324.5:ENST00000396296.7:ENST00000477432.1	protein_coding	protein_coding	protein_coding	protein_coding	6	80	2	2.17407	2.6748950000000002	3.17572	0.00427037	0.00272014	0.0573912	0.0481508
chr8	140760167	140760266	4077633	0	-	0.424242	(0.408,0.44]	chr8	370429	75	INTRON	INTRON	PTK2	ENSG00000169398.20	ENST00000696786.1:ENST00000522684.5:ENST00000395218.3:ENST00000519654.5:ENST00000521059.5:ENST00000517887.5:ENST00000519465.5:ENST00000519993.5:ENST00000340930.7:ENST00000523539.5:ENST00000519419.5:ENST00000524202.5:ENST00000521986.5:ENST00000521250.5:ENST00000521981.5:ENST00000521029.5:ENST00000520151.5:ENST00000523670.5:ENST00000519024.5:ENST00000523746.5:ENST00000523474.5:ENST00000519899.5:ENST00000519361.5:ENST00000520843.5:ENST00000521172.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	170	2	2.11596	2.674785	3.23361	0.00216527	1.44305e-5	0.0417866	0.00284474
chr6	131668162	131668262	2960497	0	+	0.4	(0.378,0.408]	chr6	278298	94	INTRON	INTRON	ENPP3	ENSG00000154269.15	ENST00000427707.5:ENST00000414305.5:ENST00000357639.8:ENST00000358229.6:ENST00000470930.5:ENST00000494023.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	54	2	2.60296	2.67471	2.74646	0.0267851	0.00271684	0.123349	0.0481064
chr11	64214611	64214710	4802329	0	+	0.474747	(0.44,0.476]	chr11	445346	25	INTRON	INTRON	FERMT3	ENSG00000149781.13	ENST00000544997.5:ENST00000345728.10:ENST00000279227.9:ENST00000541326.5:ENST00000546255.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	71	2	1.79873	2.674705	3.55068	0.0223888	7.06861e-4	0.116918	0.0241881
chr16	18890562	18890662	6457745	0	-	0.54	(0.515,0.57]	chr16	622862	3	SS5_PROX	SS5_PROX:INTRON	SMG1	ENSG00000157106.18	ENST00000446231.7:ENST00000565324.5:ENST00000561947.5:ENST00000565224.5:ENST00000532700.6	protein_coding	protein_coding	protein_coding	protein_coding	4	53	2	2.31902	2.674695	3.03037	0.00608732	0.00493032	0.0676501	0.0646039
chr6	170363712	170363812	3036935	0	+	0.36	(0.35,0.378]	chr6	283078	50	INTRON	INTRON	FAM120B	ENSG00000112584.14	ENST00000630384.2:ENST00000537664.5:ENST00000476287.4:ENST00000625626.1	protein_coding	protein_coding	protein_coding	protein_coding	6	108	2	2.46558	2.67468	2.88378	0.00387127	4.08693e-4	0.0543569	0.0181306
chr22	49655623	49655723	7602644	0	-	0.37	(0.35,0.378]	chr22	778594	282	INTRON	INTRON	MIR3667HG	ENSG00000188511.13	ENST00000414287.5:ENST00000416411.1:ENST00000689875.1:ENST00000400023.5:ENST00000405854.5	lncRNA	lncRNA	lncRNA	lncRNA	7	94	2	1.97751	2.67463	3.37175	0.00466938	0.00236696	0.0630955	0.043778
chr1	110371627	110371725	182668	0	+	0.520408	(0.515,0.57]	chr1	20258	16	EXON_LNCRNA	EXON_LNCRNA:INTRON	LAMTOR5-AS1:ENSG00000273373	ENSG00000224699.10:ENSG00000273373.1	ENST00000626572.2:ENST00000609909.1	lncRNA	lncRNA	lncRNA	lncRNA	3	45	2	2.43783	2.674615	2.9114	0.00916404	0.00826019	0.0813266	0.0812949
chr7	133060551	133060651	3645674	0	-	0.56	(0.515,0.57]	chr7	338880	86	INTRON	INTRON	CHCHD3	ENSG00000106554.13	ENST00000262570.10:ENST00000448878.6:ENST00000423635.5:ENST00000481152.2:ENST00000457942.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	45	2	2.43783	2.674615	2.9114	0.00916404	0.00826019	0.0813266	0.0812949
chr3	152313036	152313136	1535429	0	+	0.58	(0.57,1]	chr3	159996	107	INTRON	INTRON	MBNL1	ENSG00000152601.18	ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000495875.6:ENST00000324210.10:ENST00000493459.5:ENST00000459747.1:ENST00000460591.5:ENST00000545754.5:ENST00000357472.7:ENST00000324196.9:ENST00000498502.5:ENST00000463374.5:ENST00000485910.5:ENST00000465907.6:ENST00000492948.5:ENST00000485509.5:ENST00000464596.5	protein_coding	protein_coding	protein_coding	protein_coding	11	87	2	2.49718	2.674585	2.85199	1.03116e-4	9.50812e-5	0.0086994	0.00861016
chr20	49178821	49178921	7352285	0	-	0.47	(0.44,0.476]	chr20	749692	3	SS5_PROX	SS5_PROX:INTRON	STAU1	ENSG00000124214.21	ENST00000371856.7:ENST00000371828.7:ENST00000340954.11:ENST00000347458.9:ENST00000360426.8:ENST00000371792.5:ENST00000371802.5:ENST00000437404.2	protein_coding	protein_coding	protein_coding	protein_coding	4	61	2	2.22103	2.6745099999999997	3.12799	0.00776319	0.0050635	0.0787356	0.0621733
chr1	52851166	52851266	104990	0	+	0.49	(0.476,0.515]	chr1	13720	78	INTRON	INTRON	ZYG11A	ENSG00000203995.10	ENST00000371532.5:ENST00000612017.4:ENST00000371528.2	protein_coding	protein_coding	protein_coding	protein_coding	3	53	2	2.54157	2.67443	2.80729	0.0126008	0.00697457	0.0980703	0.0718189
chrX	119932752	119932847	7874614	0	-	0.484211	(0.476,0.515]	chrX	801984	1	INTRON	INTRON	NKAP	ENSG00000101882.10	ENST00000371410.5:ENST00000477789.5:ENST00000652253.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	53	2	2.54157	2.67443	2.80729	0.0126008	0.00697457	0.0980703	0.0718189
chr8	31092894	31092993	3728541	0	+	0.363636	(0.35,0.378]	chr8	346610	6	INTRON	INTRON	WRN	ENSG00000165392.11	ENST00000650667.1:ENST00000298139.7:ENST00000521620.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	67	2	2.35838	2.67441	2.99044	0.00894806	0.00468156	0.0799922	0.0631419
chr7	5229938	5230038	3272376	0	+	0.52	(0.515,0.57]	chr7	304153	2	SS5_PROX	SS5_PROX:INTRON	WIPI2	ENSG00000157954.15	ENST00000401525.7:ENST00000288828.9:ENST00000404704.7:ENST00000466014.5:ENST00000382384.6:ENST00000484262.1:ENST00000471851.1:ENST00000479690.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	53	2	1.94493	2.674405	3.40388	0.0204583	0.00142538	0.122204	0.0340865
chrX	138932531	138932631	7900888	0	-	0.55	(0.515,0.57]	chrX	804239	675	INTRON	INTRON	FGF13	ENSG00000129682.16	ENST00000441825.8:ENST00000626909.2:ENST00000436198.5:ENST00000455663.5:ENST00000448673.1:ENST00000421460.1	protein_coding	protein_coding	protein_coding	protein_coding	4	53	2	1.94493	2.674405	3.40388	0.0204583	0.00142538	0.122204	0.0340865
chr1	21138297	21138396	393244	0	-	0.363636	(0.35,0.378]	chr1	46836	253	INTRON	INTRON	EIF4G3	ENSG00000075151.24	ENST00000374935.7:ENST00000602326.6:ENST00000685872.1:ENST00000686579.1:ENST00000688741.1:ENST00000400422.6:ENST00000634879.2:ENST00000693470.1:ENST00000685814.1:ENST00000356916.7:ENST00000682284.1:ENST00000438975.5:ENST00000411888.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	85	2	1.6756	2.67433	3.67306	0.0219737	7.05001e-4	0.123836	0.024224
chr12	76077936	76078036	5370158	0	-	0.34	(0.32,0.35]	chr12	512329	33	INTRON	INTRON	NAP1L1	ENSG00000187109.15	ENST00000618691.5:ENST00000393263.7:ENST00000431879.7:ENST00000547773.5:ENST00000544816.5:ENST00000542344.5:ENST00000535020.6:ENST00000549596.5:ENST00000552342.5:ENST00000548044.5:ENST00000550934.5:ENST00000551992.5:ENST00000548273.5:ENST00000551600.5:ENST00000547704.5:ENST00000549988.5:ENST00000547479.5:ENST00000549479.1:ENST00000551500.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	14	249	2	2.45449	2.67427	2.89405	1.60265e-4	1.52482e-4	0.0112857	0.0109124
chr6	35621570	35621670	3086843	0	-	0.43	(0.408,0.44]	chr6	288775	9	INTRON	INTRON	FKBP5	ENSG00000096060.15	ENST00000536438.5:ENST00000539068.5:ENST00000357266.9:ENST00000542713.1	protein_coding	protein_coding	protein_coding	protein_coding	12	209	2	2.23395	2.6742600000000003	3.11457	0.001262	1.36061e-5	0.0329641	0.00292224
chr9	92272497	92272592	4287127	0	-	0.536842	(0.515,0.57]	chr9	394223	2	INTRON	INTRON	IARS1	ENSG00000196305.19	ENST00000375643.7:ENST00000443024.7:ENST00000447699.7:ENST00000683537.1:ENST00000684726.1:ENST00000683192.1:ENST00000683565.1:ENST00000682756.1:ENST00000684542.1:ENST00000683793.1:ENST00000683817.1:ENST00000682141.1:ENST00000682893.1:ENST00000684557.1:ENST00000498025.2:ENST00000682156.1:ENST00000627121.3:ENST00000683469.1:ENST00000683495.1:ENST00000682578.1:ENST00000682533.1:ENST00000472894.2:ENST00000684757.1:ENST00000684445.1:ENST00000683376.1:ENST00000683679.1:ENST00000683119.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	125	2	1.87686	2.67423	3.4716	0.00211445	7.76698e-5	0.0425644	0.00786812
chr21	6494898	6494998	7425426	0	-	0.48	(0.476,0.515]	chr21	757479	19	EXON_MRNA	EXON_MRNA:INTRON	ENSG00000275895	ENSG00000275895.7	ENST00000610664.5:ENST00000623375.3:ENST00000639996.1:ENST00000620065.4:ENST00000624739.1:ENST00000619610.2:ENST00000636315.1:ENST00000637031.1:ENST00000636177.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	71	2	1.63962	2.67422	3.70882	0.0346854	4.74495e-4	0.148144	0.0201638
chr7	151516593	151516693	3674893	0	-	0.31	(0.28,0.32]	chr7	341207	181	INTRON	INTRON	RHEB	ENSG00000106615.10	ENST00000262187.10:ENST00000472642.5:ENST00000478470.5:ENST00000496004.5:ENST00000470370.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	23	461	2	2.47651	2.6741	2.87169	2.3414e-4	9.01026e-6	0.0140164	0.00216015
chr6	140454670	140454770	2971003	0	+	0.35	(0.32,0.35]	chr6	279019	1392	INTRON	INTRON	ENSG00000288714	ENSG00000288714.1	ENST00000684511.1	lncRNA	lncRNA	lncRNA	lncRNA	2	46	2	2.40308	2.67409	2.9451	0.0417732	0.011051	0.161736	0.0873897
chr17	47172064	47172164	6789221	0	-	0.24	[0,0.28]	chr17	669631	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	CDC27	ENSG00000004897.12	ENST00000066544.8:ENST00000531206.5:ENST00000533415.5:ENST00000527547.5:ENST00000526866.5:ENST00000525495.6:ENST00000573550.5:ENST00000575483.5:ENST00000532893.5:ENST00000528748.5:ENST00000532575.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	121	2	2.54342	2.674015	2.80461	0.0105954	9.57163e-4	0.0861859	0.0284484
chr12	116148405	116148505	5424253	0	-	0.33	(0.32,0.35]	chr12	518263	365	INTRON	INTRON	MED13L	ENSG00000123066.9	ENST00000281928.9:ENST00000650226.1:ENST00000548743.2:ENST00000647567.1:ENST00000551197.2	protein_coding	protein_coding	protein_coding	protein_coding	5	96	2	2.53533	2.673975	2.81262	0.00311322	0.00233994	0.0498063	0.0442989
chr17	22098102	22098202	6578644	0	+	0.3	(0.28,0.32]	chr17	639556	68	INTRON	INTRON	UBBP4	ENSG00000263563.7	ENST00000648259.1:ENST00000688301.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	5	105	2	2.25881	2.6739550000000003	3.0891	0.009974	7.51507e-4	0.0842795	0.0251578
chr12	116091070	116091170	5423677	0	-	0.36	(0.35,0.378]	chr12	518245	681	INTRON	INTRON	MED13L	ENSG00000123066.9	ENST00000281928.9:ENST00000650226.1:ENST00000648737.1:ENST00000548743.2:ENST00000647567.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	103	2	2.24809	2.673835	3.09958	0.00361961	8.54875e-4	0.0554656	0.0267428
chr13	95083139	95083214	5637669	0	-	0.373333	(0.35,0.378]	chr13	537042	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	ABCC4	ENSG00000125257.16	ENST00000645237.2:ENST00000643051.1:ENST00000643842.1:ENST00000646439.1:ENST00000644880.1:ENST00000643816.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	114	2	2.32503	2.673825	3.02262	0.0014174	0.00119456	0.0346457	0.0315806
chr14	31018927	31019027	5857799	0	-	0.48	(0.476,0.515]	chr14	556512	38	INTRON	INTRON	STRN3	ENSG00000196792.12	ENST00000355683.9:ENST00000357479.10:ENST00000555358.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	68	2	2.45598	2.673815	2.89165	0.00945755	0.00142068	0.0817766	0.034662
chr16	15626888	15626986	6451545	0	-	0.479592	(0.476,0.515]	chr16	621860	7	INTRON	INTRON	MARF1	ENSG00000166783.22	ENST00000396368.8:ENST00000540441.6:ENST00000548025.5:ENST00000551742.5:ENST00000552553.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	68	2	2.45598	2.673815	2.89165	0.00945755	0.00142068	0.0817766	0.034662
chr1	23320834	23320930	399352	0	-	0.427083	(0.408,0.44]	chr1	47853	18	INTRON	INTRON	HNRNPR	ENSG00000125944.21	ENST00000478691.5:ENST00000302271.11:ENST00000374616.7:ENST00000374612.5:ENST00000675048.1:ENST00000606561.5:ENST00000427764.3:ENST00000463552.5:ENST00000470941.5:ENST00000476451.2	protein_coding	protein_coding	protein_coding	protein_coding	6	80	2	2.14702	2.67368	3.20034	0.00398025	0.0030836	0.0549214	0.0510391
chr9	131431049	131431146	4217341	0	+	0.453608	(0.44,0.476]	chr9	386728	4	INTRON	INTRON	PRRC2B	ENSG00000288701.1	ENST00000684596.1:ENST00000683519.1:ENST00000682501.1	protein_coding	protein_coding	protein_coding	protein_coding	8	129	2	2.4345	2.67368	2.91286	0.00185115	1.07786e-4	0.0388609	0.00878438
chr1	176042385	176042485	590049	0	-	0.52	(0.515,0.57]	chr1	70892	143	INTRON	INTRON	COP1	ENSG00000143207.21	ENST00000367669.8:ENST00000367667.5:ENST00000461830.6:ENST00000367666.5:ENST00000649803.1:ENST00000308769.12	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	33	2	2.43589	2.673645	2.9114	0.0370871	0.00826019	0.139194	0.0813266
chr15	50650983	50651083	6172923	0	-	0.52	(0.515,0.57]	chr15	588385	17	INTRON	INTRON	TRPM7:ENSG00000288645	ENSG00000092439.16:ENSG00000288645.1	ENST00000646667.1:ENST00000560955.5:ENST00000676296.1	protein_coding	protein_coding	protein_coding	protein_coding	2	33	2	2.43589	2.673645	2.9114	0.0370871	0.00826019	0.139194	0.0813266
chr16	87735134	87735234	6538361	0	-	0.56	(0.515,0.57]	chr16	633530	41	INTRON	INTRON	KLHDC4	ENSG00000104731.14	ENST00000567298.5:ENST00000270583.10:ENST00000347925.9:ENST00000353170.9:ENST00000316853.10:ENST00000566349.5:ENST00000562155.5:ENST00000622456.4:ENST00000562261.1:ENST00000566661.5:ENST00000567513.1:ENST00000564484.5:ENST00000565328.5:ENST00000569747.5:ENST00000564396.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	33	2	2.43589	2.673645	2.9114	0.0370871	0.00826019	0.139194	0.0813266
chr17	2601372	2601472	6547511	0	+	0.54	(0.515,0.57]	chr17	635203	66	INTRON	INTRON	PAFAH1B1	ENSG00000007168.14	ENST00000576586.5:ENST00000397195.10:ENST00000676201.1:ENST00000575477.5:ENST00000675621.1:ENST00000676353.1:ENST00000674717.1:ENST00000675202.1:ENST00000675764.1:ENST00000674608.1:ENST00000676077.1:ENST00000676098.1:ENST00000572915.6:ENST00000570400.1:ENST00000571289.1:ENST00000675430.1:ENST00000675331.1:ENST00000676188.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	33	2	2.43589	2.673645	2.9114	0.0370871	0.00826019	0.139194	0.0813266
chr17	27613816	27613915	6582374	0	+	0.525253	(0.515,0.57]	chr17	639799	18	INTRON	INTRON	KSR1	ENSG00000141068.15	ENST00000644974.2:ENST00000398988.7:ENST00000268763.10:ENST00000509603.6:ENST00000644418.1:ENST00000398982.6:ENST00000582410.5:ENST00000580430.1:ENST00000583998.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	33	2	2.43589	2.673645	2.9114	0.0370871	0.00826019	0.139194	0.0813266
chr5	34941782	34941881	2337486	0	+	0.565657	(0.515,0.57]	chr5	225763	2	INTRON	INTRON	DNAJC21	ENSG00000168724.17	ENST00000648817.1:ENST00000382021.2:ENST00000642851.1:ENST00000642675.1:ENST00000644357.1:ENST00000642285.1:ENST00000646714.1:ENST00000514237.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	33	2	2.43589	2.673645	2.9114	0.0370871	0.00826019	0.139194	0.0813266
chr8	11806764	11806862	3702562	0	+	0.357143	(0.35,0.378]	chr8	343487	29	INTRON	INTRON	FDFT1	ENSG00000079459.13	ENST00000538689.4:ENST00000615631.4:ENST00000618539.4:ENST00000530337.5:ENST00000623368.3:ENST00000446331.6:ENST00000443614.6:ENST00000220584.9:ENST00000525607.5:ENST00000525283.5:ENST00000529464.5:ENST00000525900.5:ENST00000528812.5:ENST00000622850.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	95	2	2.0519	2.6736	3.2953	0.00332946	0.0031465	0.0528877	0.0500431
chr14	101968934	101969033	5820264	0	+	0.313131	(0.28,0.32]	chr14	551975	36	INTRON	INTRON	DYNC1H1	ENSG00000197102.14	ENST00000360184.10:ENST00000684561.1:ENST00000680313.1:ENST00000679720.1:ENST00000680715.1:ENST00000681283.1:ENST00000681822.1:ENST00000679910.1:ENST00000681574.1:ENST00000645039.2:ENST00000645149.2:ENST00000680200.1:ENST00000680120.1:ENST00000644881.2:ENST00000681066.1:ENST00000680423.1:ENST00000681536.1:ENST00000679486.1:ENST00000681010.1:ENST00000679629.1:ENST00000681123.1:ENST00000680874.1:ENST00000680137.1:ENST00000643508.2:ENST00000680808.1:ENST00000681311.1:ENST00000681859.1:ENST00000643684.1:ENST00000643958.2:ENST00000680001.1:ENST00000681668.1:ENST00000645114.2:ENST00000681751.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	64	2	2.42868	2.6735949999999997	2.91851	0.0130672	0.0105331	0.093385	0.0908969
chrX	41343351	41343447	7645754	0	+	0.302083	(0.28,0.32]	chrX	782520	1	EXON_MRNA	EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DDX3X	ENSG00000215301.11	ENST00000625837.2:ENST00000626301.2:ENST00000629785.2:ENST00000630255.2:ENST00000630370.2:ENST00000630858.2:ENST00000629496.3:ENST00000478993.5:ENST00000457138.7:ENST00000644876.2:ENST00000399959.7:ENST00000644074.1:ENST00000645338.1:ENST00000646196.1:ENST00000642793.1:ENST00000646940.1:ENST00000644307.1:ENST00000645561.1:ENST00000645080.1:ENST00000642597.1:ENST00000642722.1:ENST00000644109.1:ENST00000644958.1:ENST00000646122.1:ENST00000644513.1:ENST00000645589.1:ENST00000441189.4:ENST00000646822.1:ENST00000631641.2:ENST00000646223.1:ENST00000643963.1:ENST00000646319.1:ENST00000642624.1:ENST00000542215.5:ENST00000644073.1:ENST00000644677.1:ENST00000642322.1:ENST00000645120.1:ENST00000646107.1:ENST00000646627.1:ENST00000642589.1:ENST00000645380.1:ENST00000646390.1:ENST00000642424.1:ENST00000642161.1:ENST00000645574.1:ENST00000646679.1:ENST00000642763.1:ENST00000644260.1:ENST00000647286.1:ENST00000642687.1:ENST00000647373.1:ENST00000642801.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	107	2	2.4387	2.673585	2.90847	0.0126802	4.61348e-4	0.0926667	0.0194611
chr20	535514	535613	7303898	0	-	0.565657	(0.515,0.57]	chr20	743573	71	INTRON	INTRON	CSNK2A1	ENSG00000101266.19	ENST00000646561.1:ENST00000217244.9:ENST00000643660.1:ENST00000645623.1:ENST00000400227.8:ENST00000349736.10:ENST00000644170.1:ENST00000643700.1:ENST00000645910.1:ENST00000645840.1:ENST00000646305.1:ENST00000645260.1:ENST00000642689.1:ENST00000645234.1:ENST00000646814.1:ENST00000646477.1:ENST00000644885.1:ENST00000644710.1:ENST00000647155.1:ENST00000644003.1:ENST00000645249.1:ENST00000647026.1:ENST00000400217.7:ENST00000647348.1:ENST00000643600.1:ENST00000643680.1:ENST00000460062.7:ENST00000643968.1:ENST00000644177.1:ENST00000609525.2:ENST00000645091.1:ENST00000609606.6:ENST00000608066.6:ENST00000646908.1:ENST00000645187.1:ENST00000642160.1:ENST00000608490.2:ENST00000643910.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	80	2	1.27738	2.67357	4.06976	0.0499863	5.5596e-5	0.17488	0.00651834
chr2	203427851	203427951	990593	0	+	0.38	(0.378,0.408]	chr2	106387	6	UTR3	UTR3:EXON_MRNA:INTRON	ABI2	ENSG00000138443.17	ENST00000261017.9:ENST00000295851.10:ENST00000261018.12:ENST00000424558.5:ENST00000422511.6:ENST00000261016.11:ENST00000464761.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	71	2	2.47752	2.673535	2.86955	0.0092831	0.00159247	0.0817766	0.0367961
chr10	21724443	21724543	4406337	0	+	0.34	(0.32,0.35]	chr10	406555	101	INTRON	INTRON	MLLT10	ENSG00000078403.17	ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000651298.1:ENST00000377059.7:ENST00000651382.1:ENST00000438473.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	60	2	1.88909	2.673405	3.45772	0.0553737	0.00128487	0.165463	0.0333518
chr3	172156764	172156864	1560722	0	+	0.33	(0.32,0.35]	chr3	161551	78	INTRON	INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000421757.5:ENST00000469491.5:ENST00000336824.8:ENST00000423424.5:ENST00000416957.5:ENST00000478016.1:ENST00000443501.1:ENST00000476794.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	60	2	1.88909	2.673405	3.45772	0.0553737	0.00128487	0.165463	0.0333518
chr2	26779968	26780065	715685	0	+	0.484536	(0.476,0.515]	chr2	82657	16	UTR3	UTR3:EXON_MRNA:INTRON	SLC35F6:CENPA	ENSG00000213699.9:ENSG00000115163.15	ENST00000344420.10:ENST00000429494.5:ENST00000475662.5:ENST00000414029.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	156	2	2.04194	2.67339	3.30484	0.00499341	1.69898e-5	0.0646039	0.00330681
chr6	75638592	75638691	2905319	0	+	0.171717	[0,0.28]	chr6	274513	34	INTRON	INTRON	SENP6	ENSG00000112701.18	ENST00000370010.6:ENST00000447266.7:ENST00000327284.12:ENST00000483859.6:ENST00000424947.6	protein_coding	protein_coding	protein_coding	protein_coding	7	169	2	2.01165	2.673375	3.3351	0.0156888	7.06719e-5	0.101453	0.00695475
chr1	1657698	1657798	360605	0	-	0.52	(0.515,0.57]	chr1	41964	2	SS3_PROX	SS3_PROX:INTRON	CDK11B	ENSG00000248333.9	ENST00000341832.11:ENST00000407249.7:ENST00000340677.9:ENST00000611150.3:ENST00000615951.4:ENST00000626918.2:ENST00000629289.2:ENST00000629312.2:ENST00000341028.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	33	2	2.65834	2.673335	2.68833	0.0187418	0.0184931	0.117523	0.108861
chr16	84659472	84659567	6409813	0	+	0.557895	(0.515,0.57]	chr16	615240	17	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	KLHL36	ENSG00000135686.13	ENST00000564996.6:ENST00000258157.9:ENST00000564159.1:ENST00000325279.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	33	2	2.65834	2.673335	2.68833	0.0187418	0.0184931	0.117523	0.108861
chr2	134921587	134921686	872265	0	+	0.565657	(0.515,0.57]	chr2	97663	13	INTRON	INTRON	CCNT2	ENSG00000082258.13	ENST00000419781.5:ENST00000446247.5:ENST00000264157.10:ENST00000452839.5:ENST00000295238.10:ENST00000475094.1:ENST00000417175.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	33	2	2.65834	2.673335	2.68833	0.0187418	0.0184931	0.117523	0.108861
chr9	131417215	131417315	4217201	0	+	0.55	(0.515,0.57]	chr9	386720	226	INTRON	INTRON	PRRC2B	ENSG00000288701.1	ENST00000682525.1:ENST00000684596.1:ENST00000683519.1:ENST00000682501.1	protein_coding	protein_coding	protein_coding	protein_coding	2	33	2	2.65834	2.673335	2.68833	0.0187418	0.0184931	0.117523	0.108861
chr7	130073407	130073507	3413623	0	+	0.5	(0.476,0.515]	chr7	319098	22	INTRON	INTRON	KLHDC10	ENSG00000128607.14	ENST00000335420.10:ENST00000463413.1:ENST00000468226.1	protein_coding	protein_coding	protein_coding	protein_coding	8	130	2	2.28812	2.673265	3.05841	0.00344676	4.54034e-5	0.0517761	0.00547944
chr8	129541943	129542042	4060702	0	-	0.393939	(0.378,0.408]	chr8	369648	314	INTRON	INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1:ENST00000676273.1:ENST00000667643.1:ENST00000668791.1:ENST00000663716.1:ENST00000663572.1:ENST00000676148.1:ENST00000667962.1:ENST00000674877.1:ENST00000675316.1:ENST00000674656.1:ENST00000446592.7:ENST00000667341.1:ENST00000675186.1:ENST00000652971.1:ENST00000661447.1:ENST00000674863.1:ENST00000675498.1:ENST00000675527.1:ENST00000676108.1:ENST00000657647.1:ENST00000675589.1:ENST00000675913.1:ENST00000675109.1:ENST00000671632.1:ENST00000671311.1:ENST00000676099.1:ENST00000660652.1:ENST00000675522.1:ENST00000675183.1:ENST00000658861.1:ENST00000663991.1:ENST00000675044.1:ENST00000675435.1:ENST00000674639.1:ENST00000676069.1:ENST00000675532.1:ENST00000674762.1:ENST00000523151.6:ENST00000675948.1:ENST00000665364.1:ENST00000657251.1:ENST00000675166.1:ENST00000674883.1:ENST00000675867.1:ENST00000674580.1:ENST00000675393.1:ENST00000520048.1:ENST00000674906.1:ENST00000676030.1:ENST00000670588.1:ENST00000675072.1:ENST00000664936.1:ENST00000652914.1:ENST00000657069.1	lncRNA	lncRNA	lncRNA	lncRNA	4	65	2	1.8374	2.673235	3.50907	0.0299228	0.00127828	0.142135	0.0326395
chr19	1799750	1799831	7113318	0	-	0.481481	(0.476,0.515]	chr19	714744	1	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	ATP8B3	ENSG00000130270.16	ENST00000310127.10:ENST00000531925.5:ENST00000525591.5:ENST00000526092.6:ENST00000533107.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	156	2	2.14482	2.6732	3.20158	0.00251871	1.82809e-5	0.0446195	0.00327543
chr12	111480894	111480993	5412023	0	-	0.313131	(0.28,0.32]	chr12	516837	14	INTRON	INTRON	ATXN2	ENSG00000204842.18	ENST00000642389.2:ENST00000608853.5:ENST00000672613.1:ENST00000673436.1:ENST00000643669.2:ENST00000389154.7:ENST00000616825.4:ENST00000389153.10:ENST00000550104.5:ENST00000483311.6:ENST00000672335.1:ENST00000492467.6:ENST00000673557.1:ENST00000673283.1:ENST00000673273.1:ENST00000673449.1:ENST00000535949.5:ENST00000542287.6:ENST00000643474.1:ENST00000643694.1:ENST00000645162.1:ENST00000551755.6:ENST00000644883.1:ENST00000647305.1:ENST00000495342.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	78	2	1.94591	2.67316	3.40041	0.0228482	0.00273088	0.125519	0.0467642
chr1	20743909	20744008	389420	0	-	0.515152	(0.476,0.515]	chr1	46510	38	UTR3	UTR3:EXON_MRNA:INTRON	HP1BP3	ENSG00000127483.19	ENST00000438032.6:ENST00000312239.10:ENST00000375003.6:ENST00000488722.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	18	276	2	2.26173	2.673145	3.08456	2.24879e-4	8.33318e-6	0.0132266	0.00219713
chr2	86968727	86968827	824690	0	+	0.55	(0.515,0.57]	chr2	92144	1	SS3_PROX	SS3_PROX:INTRON	RGPD1	ENSG00000187627.17	ENST00000409776.6:ENST00000398193.8:ENST00000641458.2	protein_coding	protein_coding	protein_coding	protein_coding	9	122	2	2.67059	2.67312	2.67565	4.51623e-4	1.58316e-4	0.0196617	0.0108217
chr16	58625687	58625785	6496344	0	-	0.44898	(0.44,0.476]	chr16	628651	5	INTRON	INTRON	CNOT1	ENSG00000125107.19	ENST00000317147.10:ENST00000569240.5:ENST00000567188.5:ENST00000441024.6:ENST00000565605.5:ENST00000564557.1:ENST00000569916.1:ENST00000569020.5:ENST00000568158.1:ENST00000569263.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	105	2	2.02421	2.67301	3.32181	0.00536295	2.46145e-4	0.0663076	0.0144887
chr17	20894219	20894318	6576323	0	+	0.393939	(0.378,0.408]	chr17	639384	14	INTRON	INTRON	CCDC144NL-AS1	ENSG00000233098.10	ENST00000577537.5:ENST00000692759.1:ENST00000443508.8:ENST00000692309.1:ENST00000439794.6:ENST00000417232.6:ENST00000583962.2:ENST00000582324.5:ENST00000577860.5	lncRNA	lncRNA	lncRNA	lncRNA	10	107	2	1.43729	2.67296	3.90863	0.0213592	2.19981e-4	0.12369	0.0135522
chr9	131137692	131137791	4215747	0	+	0.474747	(0.44,0.476]	chr9	386544	13	INTRON	INTRON	NUP214	ENSG00000126883.19	ENST00000695497.1:ENST00000695498.1:ENST00000695496.1:ENST00000695495.1:ENST00000695494.1:ENST00000695493.1:ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000525561.2:ENST00000651022.1:ENST00000695499.1:ENST00000530843.1:ENST00000530863.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	17	255	2	2.19263	2.6729399999999996	3.15325	5.48049e-4	4.34049e-6	0.0215652	0.00140234
chr22	21826438	21826538	7560974	0	-	0.36	(0.35,0.378]	chr22	773388	182	INTRON	INTRON	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	12	183	2	1.69633	2.67292	3.64951	0.00982759	4.36071e-6	0.0838128	0.00140234
chr1	108307291	108307390	176708	0	+	0.30303	(0.28,0.32]	chr1	19153	226	INTRON	INTRON	SLC25A24P1	ENSG00000241361.8	ENST00000411846.6:ENST00000434803.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	3	64	2	2.38391	2.6728899999999998	2.96187	0.0122525	0.0114995	0.0969406	0.0889104
chr14	30904917	30905017	5856638	0	-	0.32	(0.28,0.32]	chr14	556418	1	SS5_PROX	SS5_PROX:INTRON	STRN3	ENSG00000196792.12	ENST00000355683.9:ENST00000357479.10:ENST00000555358.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	64	2	2.38391	2.6728899999999998	2.96187	0.0122525	0.0114995	0.0969406	0.0889104
chr17	32448339	32448438	6598382	0	+	0.363636	(0.35,0.378]	chr17	641971	9	INTRON	INTRON	PSMD11	ENSG00000108671.11	ENST00000578213.5:ENST00000649012.1:ENST00000457654.6:ENST00000578397.5:ENST00000579451.1:ENST00000261712.8:ENST00000580904.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	56	2	1.93432	2.672855	3.41139	0.0481438	0.00143263	0.153019	0.0347139
chr18	2755336	2755434	6865903	0	+	0.44898	(0.44,0.476]	chr18	680131	7	INTRON	INTRON	SMCHD1	ENSG00000101596.17	ENST00000320876.11:ENST00000688342.1:ENST00000693213.1:ENST00000577880.5:ENST00000584897.5:ENST00000690757.1:ENST00000686763.1:ENST00000686864.1:ENST00000688708.1:ENST00000645355.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	86	2	1.28061	2.672855	4.0651	0.0639824	5.16491e-5	0.177882	0.00585477
chr12	64406326	64406424	5152898	0	+	0.55102	(0.515,0.57]	chr12	487721	6	INTRON	INTRON	XPOT	ENSG00000184575.12	ENST00000332707.10:ENST00000540203.5	protein_coding	protein_coding	protein_coding	protein_coding	4	53	2	1.8661	2.672845	3.47959	0.0274846	8.38022e-4	0.123904	0.0263691
chr16	21970249	21970346	6319718	0	+	0.329897	(0.32,0.35]	chr16	604998	12	INTRON	INTRON	UQCRC2	ENSG00000140740.11	ENST00000268379.9:ENST00000561553.5:ENST00000563898.5:ENST00000563711.5:ENST00000567810.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	44	2	2.37794	2.6727	2.96746	0.0498601	0.00815799	0.156383	0.0810802
chr17	70092776	70092876	6828376	0	-	0.46	(0.44,0.476]	chr17	675009	196	INTRON	INTRON	ENSG00000230258	ENSG00000230258.6	ENST00000435112.5	lncRNA	lncRNA	lncRNA	lncRNA	6	95	2	2.6358	2.6727	2.7096	0.00376205	5.12141e-4	0.0539118	0.0203407
chr11	86018812	86018910	5014333	0	-	0.5	(0.476,0.515]	chr11	472995	35	INTRON	INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000630913.2:ENST00000528398.5:ENST00000356360.9:ENST00000534412.5:ENST00000531771.5:ENST00000531558.1:ENST00000531930.5:ENST00000532041.5:ENST00000525162.5:ENST00000528256.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	20	306	2	2.04485	2.672695	3.30054	9.81723e-4	4.45007e-7	0.0285956	3.51327e-4
chr19	5079736	5079831	7004535	0	+	0.463158	(0.44,0.476]	chr19	694845	7	INTRON	INTRON	KDM4B	ENSG00000127663.15	ENST00000159111.9:ENST00000611640.4:ENST00000381759.8:ENST00000536461.5:ENST00000592175.5:ENST00000589104.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	9	143	2	2.67109	2.6726650000000003	2.67424	6.01994e-4	1.95461e-4	0.0226059	0.0122528
chr3	167685374	167685471	1853543	0	-	0.350515	(0.35,0.378]	chr3	186273	6	INTRON	INTRON	PDCD10	ENSG00000114209.15	ENST00000392750.7:ENST00000473645.6:ENST00000497056.6:ENST00000492396.5:ENST00000461494.5:ENST00000470131.5:ENST00000475915.6	protein_coding	protein_coding	protein_coding	protein_coding	3	56	2	2.23651	2.67257	3.10863	0.020879	0.00470896	0.111766	0.0631419
chr19	870337	870436	7110509	0	-	0.474747	(0.44,0.476]	chr19	714051	10	INTRON	INTRON	MED16	ENSG00000175221.16	ENST00000395808.7:ENST00000312090.10:ENST00000325464.6:ENST00000607471.5:ENST00000621073.4:ENST00000606248.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	62	2	1.87325	2.6725250000000003	3.4718	0.0265709	0.00136358	0.134088	0.0336321
chr11	86021570	86021668	5014361	0	-	0.367347	(0.35,0.378]	chr11	472995	63	INTRON	INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000630913.2:ENST00000528398.5:ENST00000356360.9:ENST00000534412.5:ENST00000531771.5:ENST00000531558.1:ENST00000531930.5:ENST00000532041.5:ENST00000525162.5:ENST00000528256.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	110	2	2.20121	2.672505	3.1438	0.0104157	9.93672e-5	0.085482	0.00838841
chr20	5610341	5610441	7312339	0	-	0.55	(0.515,0.57]	chr20	744620	1	SS5_PROX	SS5_PROX:INTRON	GPCPD1	ENSG00000125772.14	ENST00000379019.7:ENST00000481690.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	55	2	1.49871	2.67248	3.84625	0.0770828	1.34155e-4	0.196285	0.00998237
chr19	28478371	28478471	7165878	0	-	0.41	(0.408,0.44]	chr19	724189	101	INTRON	INTRON	ENSG00000283403:ENSG00000267243	ENSG00000283403.1:ENSG00000267243.6	ENST00000592347.5:ENST00000593065.5	lncRNA	lncRNA	lncRNA	lncRNA	8	126	2	2.54982	2.67246	2.7951	8.18693e-4	3.95831e-4	0.0264086	0.0178616
chr3	72445895	72445995	1745914	0	-	0.38	(0.378,0.408]	chr3	177368	654	INTRON	INTRON	RYBP	ENSG00000163602.12	ENST00000477973.5	protein_coding	protein_coding	protein_coding	protein_coding	4	71	2	2.43657	2.67246	2.90835	0.0106733	0.00133715	0.0861859	0.0335955
chr12	120174767	120174865	5433047	0	-	0.397959	(0.378,0.408]	chr12	519289	2	SS5_PROX	SS5_PROX:INTRON	GCN1	ENSG00000089154.11	ENST00000300648.7	protein_coding	protein_coding	protein_coding	protein_coding	5	86	2	2.39048	2.672435	2.95439	0.00395852	0.00148165	0.057511	0.0349546
chr1	8769223	8769323	373300	0	-	0.24	[0,0.28]	chr1	43549	155	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000656437.1:ENST00000659924.1	protein_coding	protein_coding	protein_coding	protein_coding	2	54	2	2.38757	2.6724300000000003	2.95729	0.0552962	0.0101824	0.165463	0.089002
chr1	197755380	197755480	616746	0	-	0.27	[0,0.28]	chr1	72894	192	INTRON	INTRON	DENND1B	ENSG00000213047.13	ENST00000620048.6:ENST00000294737.11:ENST00000367396.7:ENST00000235453.8:ENST00000422998.1:ENST00000468589.5:ENST00000495550.5:ENST00000477581.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	54	2	2.38757	2.6724300000000003	2.95729	0.0552962	0.0101824	0.165463	0.089002
chr16	23911043	23911143	6324511	0	+	0.25	[0,0.28]	chr16	605701	173	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000498739.1	protein_coding	protein_coding	protein_coding	protein_coding	2	54	2	2.38757	2.6724300000000003	2.95729	0.0552962	0.0101824	0.165463	0.089002
chr4	466585	466685	2092845	0	-	0.28	[0,0.28]	chr4	206783	218	INTRON	INTRON	ABCA11P:ZNF721	ENSG00000251595.7:ENSG00000182903.16	ENST00000451020.6:ENST00000514396.5:ENST00000507854.1:ENST00000515578.5:ENST00000506646.5:ENST00000507078.1:ENST00000511833.3:ENST00000338977.5:ENST00000505900.1	protein_coding	protein_coding	protein_coding:transcribed_processed_pseudogene	protein_coding:nonsense_mediated_decay:processed_transcript	2	54	2	2.38757	2.6724300000000003	2.95729	0.0552962	0.0101824	0.165463	0.089002
chr20	35005132	35005194	7332010	0	-	0.451613	(0.44,0.476]	chr20	746881	2	INTRON	INTRON	TRPC4AP	ENSG00000100991.12	ENST00000252015.3:ENST00000451813.6	protein_coding	protein_coding	protein_coding	protein_coding	6	94	2	2.53021	2.672415	2.81462	0.00247064	8.87528e-4	0.0446195	0.0271952
chr11	5379987	5380087	4897019	0	-	0.34	(0.32,0.35]	chr11	459187	327	INTRON	INTRON	HBG2:ENSG00000239920:HBE1:OR51B5	ENSG00000196565.15:ENSG00000239920.2:ENSG00000213931.7:ENSG00000167355.8	ENST00000380252.6:ENST00000380259.7:ENST00000292896.3:ENST00000380237.5:ENST00000420726.6:ENST00000420465.6:ENST00000415970.6:ENST00000418729.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:nonsense_mediated_decay:processed_transcript	5	82	2	1.76503	2.67241	3.57979	0.0240772	0.00118589	0.129859	0.0315652
chr1	245962800	245962900	675258	0	-	0.35	(0.32,0.35]	chr1	79709	68	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000493441.5:ENST00000488153.5:ENST00000492487.5:ENST00000391836.3:ENST00000464398.1:ENST00000453676.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	44	2	2.6321	2.672395	2.71269	0.0268	0.0181461	0.123349	0.114853
chr19	28473277	28473377	7165827	0	-	0.33	(0.32,0.35]	chr19	724189	50	INTRON	INTRON	ENSG00000283403:ENSG00000267243	ENSG00000283403.1:ENSG00000267243.6	ENST00000592347.5:ENST00000593065.5	lncRNA	lncRNA	lncRNA	lncRNA	2	44	2	2.6321	2.672395	2.71269	0.0268	0.0181461	0.123349	0.114853
chr8	96268606	96268706	3803291	0	+	0.35	(0.32,0.35]	chr8	352665	60	INTRON	INTRON	PTDSS1	ENSG00000156471.13	ENST00000517309.6:ENST00000337004.8:ENST00000517557.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	44	2	2.6321	2.672395	2.71269	0.0268	0.0181461	0.123349	0.114853
chr20	38949085	38949183	7272652	0	+	0.316327	(0.28,0.32]	chr20	739066	7	INTRON	INTRON	FAM83D	ENSG00000101447.15	ENST00000619304.4:ENST00000619850.2	protein_coding	protein_coding	protein_coding	protein_coding	11	217	2	1.63482	2.6723749999999997	3.70993	0.0133667	1.57681e-5	0.100827	0.00318411
chr5	151777934	151778034	2521854	0	+	0.42	(0.408,0.44]	chr5	241289	2	SS5_PROX	SS5_PROX:INTRON	G3BP1	ENSG00000145907.16	ENST00000523519.5:ENST00000520578.6:ENST00000627077.2:ENST00000678976.1:ENST00000677408.1:ENST00000678070.1:ENST00000678964.1:ENST00000678925.1:ENST00000394123.7:ENST00000676978.1:ENST00000679289.1:ENST00000677493.1:ENST00000676644.1:ENST00000677757.1:ENST00000522761.6:ENST00000677909.1:ENST00000676827.1:ENST00000520177.6:ENST00000676634.1:ENST00000678854.1:ENST00000677602.1:ENST00000519832.1:ENST00000518726.5:ENST00000676911.1:ENST00000356245.8:ENST00000678646.1:ENST00000677381.1:ENST00000678904.1:ENST00000678910.1:ENST00000678101.1:ENST00000677105.1:ENST00000676813.1:ENST00000522367.6:ENST00000517947.5:ENST00000507878.7:ENST00000520006.2:ENST00000678369.1:ENST00000677433.1:ENST00000678564.1:ENST00000677252.1:ENST00000677369.1:ENST00000677284.1:ENST00000676894.1:ENST00000677923.1:ENST00000677323.1:ENST00000522666.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	51	2	2.44674	2.672345	2.89795	0.0110735	0.00868283	0.0873897	0.0842798
chr1	167399665	167399765	246668	0	+	0.44	(0.408,0.44]	chr1	29382	3	SS5_PROX	SS5_PROX:INTRON	POU2F1	ENSG00000143190.23	ENST00000367866.7:ENST00000271411.8:ENST00000429375.6:ENST00000367865.5:ENST00000541643.7:ENST00000648671.1:ENST00000367862.9:ENST00000420254.7:ENST00000443275.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	51	2	2.39162	2.6722900000000003	2.95296	0.0105837	0.00929354	0.0911864	0.0817766
chr10	102260316	102260416	4512791	0	+	0.42	(0.408,0.44]	chr10	415697	2	SS5_PROX	SS5_PROX:INTRON	GBF1	ENSG00000107862.7	ENST00000676513.1:ENST00000676939.1:ENST00000677439.1:ENST00000677240.1:ENST00000677618.1:ENST00000679155.1:ENST00000679280.1:ENST00000678036.1:ENST00000678476.1:ENST00000678504.1:ENST00000677247.1:ENST00000677655.1:ENST00000678351.1:ENST00000679238.1:ENST00000677487.1:ENST00000677506.1:ENST00000678666.1:ENST00000676560.1:ENST00000673650.1:ENST00000674034.1:ENST00000369983.5:ENST00000679003.1:ENST00000678486.1:ENST00000676682.1:ENST00000676807.1:ENST00000676993.1:ENST00000678575.1:ENST00000677522.1:ENST00000678293.1:ENST00000679087.1:ENST00000677683.1:ENST00000676861.1:ENST00000677491.1:ENST00000677461.1:ENST00000677871.1:ENST00000677431.1:ENST00000678222.1:ENST00000678826.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	69	2	2.36185	2.672225	2.9826	0.0133164	9.23082e-4	0.094512	0.0278392
chr18	12319735	12319835	6874884	0	+	0.42	(0.408,0.44]	chr18	681093	83	INTRON	INTRON	TUBB6	ENSG00000176014.13	ENST00000590693.5:ENST00000590103.5:ENST00000591909.5:ENST00000317702.10:ENST00000417736.2:ENST00000586810.5:ENST00000586653.5:ENST00000590388.5:ENST00000592683.5:ENST00000590967.5:ENST00000591208.1:ENST00000591463.1:ENST00000586691.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	69	2	2.36185	2.672225	2.9826	0.0133164	9.23082e-4	0.094512	0.0278392
chr19	209866	209966	7108787	0	-	0.19	[0,0.28]	chr19	713685	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	LINC01002	ENSG00000282508.2	ENST00000631772.1:ENST00000633151.1:ENST00000631644.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	6	139	2	2.16951	2.672225	3.17494	0.0065865	0.00114737	0.0737338	0.0308663
chr8	53977226	53977326	3952841	0	-	0.58	(0.57,1]	chr8	362510	64	INTRON	INTRON	TCEA1	ENSG00000187735.15	ENST00000396401.7:ENST00000521604.7:ENST00000521086.6:ENST00000522635.5:ENST00000522397.5:ENST00000640382.1:ENST00000640041.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	29	2	2.53383	2.6722	2.81057	0.02547	0.00169295	0.12011	0.0381936
chr1	2191418	2191514	362920	0	-	0.666667	(0.57,1]	chr1	42338	18	EXON_MRNA	EXON_MRNA:INTRON	FAAP20	ENSG00000162585.17	ENST00000400919.7:ENST00000469733.5:ENST00000414253.5:ENST00000428120.5:ENST00000400918.7:ENST00000497675.2:ENST00000487186.5:ENST00000401813.7:ENST00000378546.9:ENST00000378543.2:ENST00000476803.1:ENST00000440825.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	38	2	1.64415	2.672005	3.69986	0.0342575	1.9698e-4	0.135558	0.0122531
chr19	800478	800577	6992125	0	+	0.666667	(0.57,1]	chr19	692237	5	INTRON	INTRON	PTBP1	ENSG00000011304.22	ENST00000635647.1:ENST00000627714.2:ENST00000676227.1:ENST00000677277.1:ENST00000592804.2:ENST00000349038.8:ENST00000590887.5:ENST00000586481.5:ENST00000586944.5:ENST00000356948.11:ENST00000394601.8:ENST00000589575.5:ENST00000587191.3:ENST00000679114.1:ENST00000350092.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	38	2	1.64415	2.672005	3.69986	0.0342575	1.9698e-4	0.135558	0.0122531
chr15	82384149	82384249	6075822	0	+	0.5	(0.476,0.515]	chr15	578727	284	INTRON	INTRON	UBE2Q2P2	ENSG00000259429.5	ENST00000618775.4	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	4	69	2	2.26789	2.67195	3.07601	0.0176567	5.95211e-4	0.105233	0.0221865
chr13	32520279	32520378	5572663	0	-	0.383838	(0.378,0.408]	chr13	532556	19	INTRON	INTRON	N4BP2L2	ENSG00000244754.9	ENST00000357505.10:ENST00000399396.7:ENST00000504114.5:ENST00000509076.1:ENST00000446957.6:ENST00000674456.1:ENST00000674161.1:ENST00000674422.1:ENST00000674272.1:ENST00000674452.1:ENST00000674384.1:ENST00000505213.5:ENST00000674219.1:ENST00000267068.5:ENST00000674349.1:ENST00000674428.1:ENST00000503814.2:ENST00000674465.1:ENST00000674421.1:ENST00000674180.1:ENST00000674297.1:ENST00000674293.1:ENST00000674480.1:ENST00000674377.1:ENST00000674437.1:ENST00000674327.1:ENST00000674399.1:ENST00000674196.1:ENST00000674163.1:ENST00000511143.5:ENST00000674484.1:ENST00000475731.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	54	2	1.8252	2.6719	3.5186	0.0619563	8.45009e-4	0.174514	0.0263813
chr22	17668423	17668523	7475318	0	+	0.45	(0.44,0.476]	chr22	762160	122	INTRON	INTRON	BCL2L13	ENSG00000099968.18	ENST00000399781.5:ENST00000399782.5:ENST00000337612.9:ENST00000418951.6:ENST00000538149.5:ENST00000543133.5:ENST00000611738.4:ENST00000616863.4:ENST00000618481.4:ENST00000498133.5:ENST00000317582.10:ENST00000464649.1:ENST00000493680.5:ENST00000355028.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	52	2	2.38519	2.671895	2.9586	0.012193	0.00758318	0.0910127	0.0773151
chr22	23183335	23183435	7483231	0	+	0.47	(0.44,0.476]	chr22	763531	7	INTRON	INTRON	BCR	ENSG00000186716.21	ENST00000479188.5:ENST00000359540.7:ENST00000305877.13	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	116	2	2.67109	2.6716800000000003	2.67227	0.0010793	6.01994e-4	0.0300133	0.0226059
chr1	246885980	246886080	681480	0	-	0.39	(0.378,0.408]	chr1	79934	3	SS3_PROX	SS3_PROX:INTRON	AHCTF1	ENSG00000153207.16	ENST00000648844.2:ENST00000326225.3:ENST00000366508.5:ENST00000470300.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	208	2	2.45281	2.671675	2.89054	1.7148e-4	1.07813e-4	0.0113605	0.00931098
chr5	131755373	131755473	2720328	0	-	0.38	(0.378,0.408]	chr5	255730	103	INTRON	INTRON	FNIP1	ENSG00000217128.13	ENST00000510461.6:ENST00000307954.12:ENST00000307968.11:ENST00000511848.1	protein_coding	protein_coding	protein_coding	protein_coding	5	86	2	2.06535	2.671595	3.27784	0.0159849	2.17147e-4	0.101453	0.0129235
chr5	104289775	104289875	2443313	0	+	0.29	(0.28,0.32]	chr5	234410	1845	INTRON	INTRON	LINC02163	ENSG00000251026.2	ENST00000662211.1:ENST00000666145.1	lncRNA	lncRNA	lncRNA	lncRNA	4	77	2	2.18212	2.671565	3.16101	0.010265700000000001	0.0061861	0.089002	0.0677395
chr5	139325862	139325962	2499719	0	+	0.29	(0.28,0.32]	chr5	238973	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MATR3	ENSG00000280987.4:ENSG00000015479.20	ENST00000509990.5:ENST00000361059.7:ENST00000394800.6:ENST00000502929.5:ENST00000504203.5:ENST00000502499.5:ENST00000510056.5:ENST00000394805.8:ENST00000503811.5:ENST00000618441.5:ENST00000505625.5:ENST00000502422.5:ENST00000512040.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	77	2	2.14534	2.6715400000000002	3.19774	0.0117054	0.00548491	0.0962115	0.0648867
chr13	110903077	110903176	5650526	0	-	0.363636	(0.35,0.378]	chr13	538370	20	INTRON	INTRON	ANKRD10	ENSG00000088448.14	ENST00000267339.6:ENST00000489973.6:ENST00000310847.8:ENST00000465753.1:ENST00000494859.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	24	395	2	2.48532	2.671535	2.85775	2.93604e-5	2.72302e-5	0.00430766	0.00430583
chr3	185919696	185919796	1886410	0	-	0.29	(0.28,0.32]	chr3	188610	2	SS3_PROX	SS3_PROX:INTRON	TRA2B	ENSG00000136527.19	ENST00000453386.7:ENST00000492417.5:ENST00000463328.5:ENST00000259043.11:ENST00000414862.5:ENST00000487615.5:ENST00000466832.5:ENST00000456380.5:ENST00000382191.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	160	2	1.71173	2.67151	3.63129	0.0121526	1.07432e-4	0.0964034	0.00929213
chr19	50401377	50401477	7092854	0	+	0.32	(0.28,0.32]	chr19	710788	2	SS3_PROX	SS3_PROX:INTRON	POLD1	ENSG00000062822.16	ENST00000600859.5:ENST00000600746.2:ENST00000599857.7:ENST00000613923.6:ENST00000601098.6:ENST00000643407.1:ENST00000440232.7:ENST00000595904.6:ENST00000593887.2:ENST00000687454.1:ENST00000644560.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	130	2	2.50602	2.671465	2.83691	0.00290205	0.00108506	0.0494641	0.0303448
chr22	20521667	20521765	7479489	0	+	0.316327	(0.28,0.32]	chr22	762957	23	INTRON	INTRON	MED15	ENSG00000099917.17	ENST00000445987.5:ENST00000444094.5:ENST00000414658.5:ENST00000486656.5:ENST00000433831.5:ENST00000432052.5:ENST00000292733.11:ENST00000263205.11:ENST00000477824.5:ENST00000406969.5:ENST00000382974.6:ENST00000441501.5:ENST00000438962.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	50	2	2.38101	2.6714399999999996	2.96187	0.0456017	0.0114995	0.164236	0.0889104
chr21	46316141	46316235	7471608	0	-	0.457447	(0.44,0.476]	chr21	761745	2	INTRON	INTRON	C21orf58	ENSG00000160298.18	ENST00000491666.5:ENST00000397683.5:ENST00000417060.5:ENST00000397682.7:ENST00000291691.12:ENST00000397680.5:ENST00000397679.5:ENST00000445935.5:ENST00000475776.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	70	2	1.7965	2.67141	3.54632	0.0205549	9.9951e-4	0.122348	0.0288906
chr14	21249349	21249449	5834965	0	-	0.39	(0.378,0.408]	chr14	554459	125	INTRON	INTRON	HNRNPC	ENSG00000092199.19	ENST00000336053.10:ENST00000553300.6:ENST00000554969.5:ENST00000556142.5:ENST00000554455.5:ENST00000430246.6:ENST00000553753.5:ENST00000555309.5:ENST00000555914.5:ENST00000557442.5:ENST00000556628.5:ENST00000556513.5:ENST00000555883.5:ENST00000557201.5:ENST00000556897.5:ENST00000420743.6:ENST00000554539.5:ENST00000554383.5:ENST00000555215.5:ENST00000555137.5:ENST00000554891.5:ENST00000556226.5:ENST00000555176.5:ENST00000553614.5:ENST00000557336.1:ENST00000557768.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	86	2	2.39664	2.671385	2.94613	0.00480522	0.00112461	0.0602209	0.0308177
chr18	2718534	2718634	6865516	0	+	0.45	(0.44,0.476]	chr18	680042	1	SS5_PROX	SS5_PROX:INTRON	SMCHD1	ENSG00000101596.17	ENST00000320876.11:ENST00000688342.1:ENST00000693213.1:ENST00000577880.5:ENST00000584897.5:ENST00000581711.1:ENST00000583441.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	61	2	2.03266	2.671385	3.31011	0.0155853	0.00259023	0.109411	0.0452934
chr2	58188996	58189089	1126216	0	-	0.397849	(0.378,0.408]	chr2	120908	1	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	FANCL	ENSG00000115392.13	ENST00000696400.1:ENST00000403295.8:ENST00000696492.1:ENST00000427708.7:ENST00000696314.1:ENST00000696315.1:ENST00000696454.1:ENST00000696508.1:ENST00000696548.1:ENST00000696542.1:ENST00000696432.1:ENST00000696319.1:ENST00000403676.6:ENST00000696433.1:ENST00000696434.1:ENST00000696499.1:ENST00000696564.1:ENST00000402135.8:ENST00000696546.1:ENST00000233741.9:ENST00000696316.1:ENST00000696378.1:ENST00000696435.1:ENST00000696493.1:ENST00000696543.1:ENST00000696544.1:ENST00000696545.1:ENST00000696565.1:ENST00000696620.1:ENST00000696621.1:ENST00000696635.1:ENST00000696364.1:ENST00000696634.1:ENST00000696619.1:ENST00000696317.1:ENST00000696622.1:ENST00000696467.1:ENST00000696547.1:ENST00000449070.6:ENST00000696305.1:ENST00000417361.2:ENST00000696338.1:ENST00000696361.1:ENST00000696318.1:ENST00000696371.1:ENST00000696409.1:ENST00000696410.1:ENST00000696455.1:ENST00000696468.1:ENST00000696527.1:ENST00000696567.1:ENST00000696324.1:ENST00000696566.1:ENST00000696623.1:ENST00000446381.6:ENST00000696469.1:ENST00000696624.1:ENST00000696411.1:ENST00000696475.1:ENST00000470506.2:ENST00000696358.1:ENST00000696373.1:ENST00000696394.1:ENST00000696320.1:ENST00000696339.1:ENST00000696395.1:ENST00000696341.1:ENST00000696340.1:ENST00000696374.1:ENST00000696396.1:ENST00000696342.1:ENST00000696325.1:ENST00000696399.1:ENST00000696398.1:ENST00000696306.1:ENST00000696397.1:ENST00000696360.1:ENST00000696344.1:ENST00000696343.1:ENST00000696637.1:ENST00000696362.1:ENST00000696528.1:ENST00000696497.1:ENST00000696326.1:ENST00000696638.1:ENST00000696625.1:ENST00000696510.1:ENST00000696438.1:ENST00000696496.1:ENST00000696509.1:ENST00000696569.1:ENST00000696457.1:ENST00000696458.1:ENST00000696473.1:ENST00000696495.1:ENST00000696415.1:ENST00000696472.1:ENST00000696494.1:ENST00000696363.1:ENST00000696414.1:ENST00000696529.1:ENST00000696471.1:ENST00000696459.1:ENST00000696498.1:ENST00000696532.1:ENST00000696416.1:ENST00000696530.1:ENST00000696460.1:ENST00000696570.1:ENST00000696531.1:ENST00000696307.1:ENST00000696401.1:ENST00000696345.1:ENST00000696377.1:ENST00000696417.1:ENST00000696594.1:ENST00000696595.1:ENST00000696379.1:ENST00000696346.1:ENST00000696380.1:ENST00000696347.1:ENST00000696461.1:ENST00000696596.1:ENST00000696549.1:ENST00000696597.1:ENST00000696550.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	54	2	2.35103	2.6713649999999998	2.9917	0.014158	0.0068789	0.0959618	0.0749442
chr6	31748327	31748426	2843572	0	+	0.414141	(0.408,0.44]	chr6	267803	5	INTRON	INTRON	MSH5:MSH5-SAPCD1	ENSG00000204410.16:ENSG00000255152.8	ENST00000375755.8:ENST00000375750.9:ENST00000650702.1:ENST00000493662.6:ENST00000375703.7:ENST00000375740.7:ENST00000423982.6:ENST00000463144.5:ENST00000450148.5:ENST00000497269.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	20	307	2	2.16523	2.67134	3.17745	5.57759e-4	1.09439e-6	0.0218006	5.99786e-4
chr17	82622099	82622199	6853420	0	-	0.4	(0.378,0.408]	chr17	679348	3	SS3_PROX	SS3_PROX:INTRON	WDR45B	ENSG00000141580.16	ENST00000392325.9:ENST00000572583.5:ENST00000573656.5:ENST00000571835.5:ENST00000573616.5:ENST00000571767.5:ENST00000571817.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	150	2	2.18144	2.671315	3.16119	0.0035488	2.46859e-5	0.0529478	0.00390035
chr16	15138954	15139053	6450845	0	-	0.626263	(0.57,1]	chr16	621698	1	INTRON	INTRON	PKD1P6	ENSG00000250251.6	ENST00000343738.10	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	3	29	2	1.91937	2.6713	3.42323	0.0468438	8.58388e-4	0.167716	0.0267428
chr3	14403845	14403945	1369404	0	+	0.65	(0.57,1]	chr3	144308	6	INTRON	INTRON	SLC6A6	ENSG00000131389.18	ENST00000613060.4:ENST00000618278.4:ENST00000610642.4:ENST00000622810.4:ENST00000649500.1:ENST00000622186.5:ENST00000621751.4:ENST00000613930.4:ENST00000622176.4:ENST00000615188.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	29	2	1.91937	2.6713	3.42323	0.0468438	8.58388e-4	0.167716	0.0267428
chr16	643742	643841	6273188	0	+	0.585859	(0.57,1]	chr16	598786	2	INTRON	INTRON	MCRIP2	ENSG00000172366.20	ENST00000611328.4:ENST00000307650.9:ENST00000491999.5:ENST00000629534.2:ENST00000474840.5:ENST00000615744.4:ENST00000620462.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	28	2	2.02391	2.6712499999999997	3.31859	0.0339274	0.00137292	0.134508	0.0340241
chr2	20268634	20268733	1075945	0	-	0.262626	[0,0.28]	chr2	114960	48	INTRON	INTRON	PUM2	ENSG00000055917.16	ENST00000338086.9:ENST00000361078.7:ENST00000440577.5	protein_coding	protein_coding	protein_coding	protein_coding	5	123	2	2.39991	2.671245	2.94258	0.0163416	5.0709e-4	0.101571	0.0202328
chr1	8489971	8490071	370489	0	-	0.53	(0.515,0.57]	chr1	43466	236	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000377464.5:ENST00000400907.6:ENST00000656437.1:ENST00000464972.5:ENST00000659924.1:ENST00000480342.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	44	2	2.15051	2.671145	3.19178	0.0238113	0.00289534	0.118889	0.0494641
chr20	35741768	35741840	7336561	0	-	0.541667	(0.515,0.57]	chr20	747516	3	SS5_PROX	SS5_PROX:INTRON	RBM39	ENSG00000131051.24	ENST00000253363.11:ENST00000639702.1:ENST00000656873.1:ENST00000463004.5:ENST00000361162.10:ENST00000403542.6:ENST00000338163.10:ENST00000528062.7:ENST00000429968.5:ENST00000444878.5:ENST00000665058.1:ENST00000374038.7:ENST00000412738.5:ENST00000455343.5:ENST00000442447.5:ENST00000433027.5:ENST00000453310.5:ENST00000416529.5:ENST00000397370.3:ENST00000463098.5:ENST00000461849.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	97	2	2.54655	2.671135	2.79572	8.595e-4	5.08572e-4	0.0267428	0.0202333
chr14	63533229	63533329	5907804	0	-	0.51	(0.476,0.515]	chr14	561136	251	INTRON	INTRON	PPP2R5E	ENSG00000154001.14	ENST00000337537.8:ENST00000555899.1:ENST00000553266.5:ENST00000556878.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	51	2	2.26789	2.671055	3.07422	0.0176567	0.00506023	0.105233	0.0646039
chr2	222914422	222914521	1021753	0	+	0.484848	(0.476,0.515]	chr2	109292	28	INTRON	INTRON	ACSL3	ENSG00000123983.15	ENST00000392066.7:ENST00000407441.5:ENST00000680251.1:ENST00000679541.1:ENST00000681906.1:ENST00000679545.1:ENST00000679932.1:ENST00000680100.1:ENST00000680475.1:ENST00000680525.1:ENST00000680420.1:ENST00000681326.1:ENST00000681292.1:ENST00000681017.1:ENST00000680382.1:ENST00000535678.2:ENST00000680395.1:ENST00000680736.1:ENST00000680147.1:ENST00000357430.8:ENST00000681009.1:ENST00000679514.1:ENST00000681697.1:ENST00000680921.1:ENST00000681383.1:ENST00000679558.1:ENST00000680684.1:ENST00000680424.1:ENST00000542810.1:ENST00000540115.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	94	2	2.57058	2.6710450000000003	2.77151	0.00288481	7.29232e-4	0.0475859	0.0246094
chr1	70211654	70211754	142489	0	+	0.29	(0.28,0.32]	chr1	15965	55	INTRON	INTRON	SRSF11	ENSG00000116754.14	ENST00000370951.5:ENST00000463877.1:ENST00000687381.1:ENST00000370950.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	64	2	2.51426	2.6709750000000003	2.82769	0.0169391	0.00781326	0.103888	0.0788246
chr11	68091861	68091960	4972300	0	-	0.282828	(0.28,0.32]	chr11	469432	21	INTRON	INTRON	CHKA	ENSG00000110721.12	ENST00000265689.9:ENST00000356135.9:ENST00000531341.1	protein_coding	protein_coding	protein_coding	protein_coding	3	64	2	2.51426	2.6709750000000003	2.82769	0.0169391	0.00781326	0.103888	0.0788246
chr12	121313098	121313198	5436771	0	-	0.51	(0.476,0.515]	chr12	519847	27	INTRON	INTRON	ANAPC5	ENSG00000089053.13	ENST00000261819.8:ENST00000535641.5:ENST00000541887.5:ENST00000534976.5:ENST00000441917.6:ENST00000539079.5:ENST00000544314.5:ENST00000535482.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	112	2	2.36512	2.670875	2.97663	0.00246559	2.26055e-4	0.0446195	0.0132815
chr6	26196360	26196455	3071005	0	-	0.557895	(0.515,0.57]	chr6	285430	9	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ENSG00000282988	ENSG00000282988.2	ENST00000635641.1:ENST00000650491.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	140	2	2.42476	2.67087	2.91698	6.76573e-4	4.94351e-5	0.0236287	0.00608778
chr11	111604890	111604990	4862601	0	+	0.35	(0.32,0.35]	chr11	453656	18	INTRON	INTRON	SIK2	ENSG00000170145.5	ENST00000304987.4	protein_coding	protein_coding	protein_coding	protein_coding	4	80	2	2.63115	2.67084	2.71053	0.00608073	0.00346747	0.0676501	0.0539802
chr16	47615468	47615567	6344860	0	+	0.414141	(0.408,0.44]	chr16	608945	42	INTRON	INTRON	PHKB	ENSG00000102893.17	ENST00000566044.5:ENST00000299167.12:ENST00000696809.1:ENST00000323584.10:ENST00000568439.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	52	2	1.88062	2.67083	3.46104	0.0534548	0.00105552	0.162935	0.0299229
chr2	152738857	152738957	894460	0	+	0.32	(0.28,0.32]	chr2	99130	16	INTRON	INTRON	ARL6IP6	ENSG00000177917.12	ENST00000690727.1:ENST00000685752.1:ENST00000688293.1:ENST00000686839.1:ENST00000689155.1:ENST00000691702.1:ENST00000691523.1:ENST00000688012.1:ENST00000687504.1:ENST00000455875.6:ENST00000692399.1:ENST00000425034.6:ENST00000686080.1:ENST00000326446.10:ENST00000463690.2:ENST00000688130.1:ENST00000495469.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	64	2	2.33771	2.67083	3.00395	0.0142701	0.0101329	0.103838	0.0850389
chr20	3975399	3975499	7309006	0	-	0.31	(0.28,0.32]	chr20	744300	6	INTRON	INTRON	RNF24	ENSG00000101236.17	ENST00000336095.10:ENST00000358395.11:ENST00000545616.2	protein_coding	protein_coding	protein_coding	protein_coding	3	64	2	2.33771	2.67083	3.00395	0.0142701	0.0101329	0.103838	0.0850389
chr16	88930244	88930344	6540828	0	-	0.54	(0.515,0.57]	chr16	634096	279	INTRON	INTRON	CBFA2T3	ENSG00000129993.15	ENST00000268679.9:ENST00000327483.9:ENST00000569464.5:ENST00000569443.5:ENST00000563640.1:ENST00000564416.1:ENST00000570046.1	protein_coding	protein_coding	protein_coding	protein_coding	3	45	2	2.60899	2.670785	2.73258	0.0232669	0.00260192	0.118148	0.0470772
chr16	2261877	2261977	6431630	0	-	0.24	[0,0.28]	chr16	618788	2	SS5_PROX	SS5_PROX:INTRON	RNPS1	ENSG00000205937.12	ENST00000397086.6:ENST00000566458.5:ENST00000320225.10:ENST00000566397.5:ENST00000565678.5:ENST00000561718.5:ENST00000568631.5:ENST00000569598.6:ENST00000301730.12:ENST00000567147.5:ENST00000565870.5:ENST00000561518.5:ENST00000564311.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	89	2	1.82783	2.67072	3.51361	0.0410712	0.00142208	0.1451	0.0346633
chr1	110371528	110371627	182667	0	+	0.383838	(0.378,0.408]	chr1	20258	15	EXON_LNCRNA	EXON_LNCRNA:INTRON	LAMTOR5-AS1:ENSG00000273373	ENSG00000224699.10:ENSG00000273373.1	ENST00000626572.2:ENST00000609909.1	lncRNA	lncRNA	lncRNA	lncRNA	11	177	2	2.25483	2.67068	3.08653	7.76693e-4	7.70041e-5	0.0256531	0.00783983
chr16	18818063	18818157	6456942	0	-	0.478723	(0.476,0.515]	chr16	622605	2	INTRON	INTRON	SMG1	ENSG00000157106.18	ENST00000446231.7:ENST00000565324.5	protein_coding	protein_coding	protein_coding	protein_coding	4	68	2	2.66112	2.670675	2.68023	0.0044598	0.00353671	0.0592169	0.0546236
chr13	28243627	28243727	5461885	0	+	0.38	(0.378,0.408]	chr13	523271	32	INTRON	INTRON	PAN3	ENSG00000152520.14	ENST00000503791.5:ENST00000380958.8:ENST00000399613.1:ENST00000483842.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	64	2	1.82258	2.6705900000000002	3.5186	0.0341279	8.45009e-4	0.135102	0.0263813
chrX	71417332	71417432	7678758	0	+	0.4	(0.378,0.408]	chrX	786274	7	INTRON	INTRON	TAF1	ENSG00000147133.17	ENST00000683202.1:ENST00000373790.9:ENST00000423759.6:ENST00000683782.1:ENST00000683668.1:ENST00000276072.9:ENST00000373775.8:ENST00000485087.6:ENST00000437147.8:ENST00000683358.1:ENST00000682124.1:ENST00000461764.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	64	2	1.82258	2.6705900000000002	3.5186	0.0341279	8.45009e-4	0.135102	0.0263813
chr7	23188917	23189016	3289701	0	+	0.282828	(0.28,0.32]	chr7	305556	8	INTRON	INTRON	NUP42	ENSG00000136243.18	ENST00000485250.5:ENST00000438012.5:ENST00000258742.10:ENST00000487595.5:ENST00000413919.1:ENST00000437140.5:ENST00000486136.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	77	2	2.1076	2.6705750000000004	3.23355	0.0133585	0.004869	0.100772	0.0607461
chr9	130079229	130079329	4211211	0	+	0.43	(0.408,0.44]	chr9	386011	2	SS3_PROX	SS3_PROX:INTRON	GPR107	ENSG00000148358.20	ENST00000372406.5:ENST00000372410.7:ENST00000347136.11:ENST00000493417.5:ENST00000610997.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	87	2	2.01032	2.670495	3.33067	0.00377558	0.0024459	0.0562562	0.0445752
chr7	87181001	87181098	3345923	0	+	0.525773	(0.515,0.57]	chr7	311682	3	SS3_PROX	SS3_PROX:INTRON	DMTF1	ENSG00000135164.19	ENST00000413276.6:ENST00000447863.5:ENST00000579677.5:ENST00000425406.5:ENST00000547146.6:ENST00000579850.5:ENST00000331242.12:ENST00000432937.6:ENST00000584619.5:ENST00000394703.9:ENST00000412139.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	133	2	2.23501	2.67047	3.10593	0.00132333	2.50623e-5	0.03326	0.00392664
chr13	19762501	19762600	5552740	0	-	0.454545	(0.44,0.476]	chr13	530722	27	INTRON	INTRON	PSPC1	ENSG00000121390.19	ENST00000471658.5:ENST00000492741.5:ENST00000338910.9:ENST00000619300.4:ENST00000427943.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	38	2	2.38219	2.670395	2.9586	0.045456	0.00758318	0.149888	0.0773151
chr17	59684421	59684509	6642252	0	+	0.454545	(0.44,0.476]	chr17	648672	6	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	CLTC	ENSG00000141367.12	ENST00000621829.4:ENST00000393043.5:ENST00000269122.8:ENST00000579456.5:ENST00000496076.1:ENST00000472651.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	38	2	2.38219	2.670395	2.9586	0.045456	0.00758318	0.149888	0.0773151
chr4	128826542	128826641	2044434	0	+	0.464646	(0.44,0.476]	chr4	202994	97	INTRON	INTRON	JADE1	ENSG00000077684.16	ENST00000226319.11:ENST00000511647.5:ENST00000452328.6:ENST00000504089.5:ENST00000512960.5:ENST00000503785.5:ENST00000514740.1:ENST00000610919.4:ENST00000510308.5:ENST00000511925.5:ENST00000413543.6:ENST00000611140.4:ENST00000507833.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	38	2	2.38219	2.670395	2.9586	0.045456	0.00758318	0.149888	0.0773151
chr5	154951536	154951635	2527978	0	+	0.474747	(0.44,0.476]	chr5	241792	2	INTRON	INTRON	MRPL22	ENSG00000082515.18	ENST00000523037.6:ENST00000265229.12:ENST00000439747.7:ENST00000522038.5:ENST00000519059.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	38	2	2.38219	2.670395	2.9586	0.045456	0.00758318	0.149888	0.0773151
chr1	2250567	2250667	2389	0	+	0.44	(0.408,0.44]	chr1	557	21	INTRON	INTRON	SKI	ENSG00000157933.10	ENST00000378536.5:ENST00000508416.1:ENST00000478223.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	52	2	2.31565	2.6703900000000003	3.02513	0.0154718	0.0059965	0.100909	0.0700606
chr19	47652971	47653071	7086201	0	+	0.46	(0.44,0.476]	chr19	709045	450	INTRON	INTRON	ENSG00000268746	ENSG00000268746.1	ENST00000599924.1	lncRNA	lncRNA	lncRNA	lncRNA	3	51	2	2.08277	2.6703900000000003	3.25801	0.0309998	0.00248185	0.13151	0.0460771
chr20	38049366	38049462	7269034	0	+	0.447917	(0.44,0.476]	chr20	738686	5	INTRON	INTRON	RPRD1B	ENSG00000101413.12	ENST00000462548.6:ENST00000373433.9:ENST00000495457.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	51	2	2.08277	2.6703900000000003	3.25801	0.0309998	0.00248185	0.13151	0.0460771
chr7	135378910	135379009	3647635	0	-	0.464646	(0.44,0.476]	chr7	339120	145	INTRON	INTRON	CNOT4	ENSG00000080802.20	ENST00000541284.6:ENST00000451834.5:ENST00000423368.6:ENST00000361528.8:ENST00000473470.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	51	2	2.08277	2.6703900000000003	3.25801	0.0309998	0.00248185	0.13151	0.0460771
chr1	90996261	90996361	502270	0	-	0.35	(0.32,0.35]	chr1	59504	135	INTRON	INTRON	ZNF644	ENSG00000122482.22	ENST00000370440.5:ENST00000337393.10:ENST00000347275.9:ENST00000361321.5:ENST00000467231.5:ENST00000498303.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	59	2	2.30476	2.670365	3.03597	0.0151817	0.00832487	0.108535	0.0774402
chr4	39766671	39766770	1953680	0	+	0.353535	(0.35,0.378]	chr4	195650	55	INTRON	INTRON	UBE2K	ENSG00000078140.14	ENST00000510934.5:ENST00000261427.10:ENST00000438068.6:ENST00000513231.5:ENST00000503368.5:ENST00000445950.2:ENST00000510719.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	160	2	2.04239	2.670325	3.29826	0.00668612	1.16858e-5	0.0706751	0.00252017
chr6	147724241	147724341	2991239	0	+	0.44	(0.408,0.44]	chr6	280167	314	INTRON	INTRON	ENSG00000227681	ENSG00000227681.5	ENST00000427015.1:ENST00000432506.5:ENST00000442094.5:ENST00000434985.1	lncRNA	lncRNA	lncRNA	lncRNA	3	51	2	2.49983	2.6703	2.84077	0.0132196	0.00713527	0.0940535	0.0756118
chr7	157146230	157146329	3454012	0	+	0.464646	(0.44,0.476]	chr7	322895	65	INTRON	INTRON	UBE3C	ENSG00000009335.18	ENST00000611269.4:ENST00000348165.10:ENST00000389103.4:ENST00000430750.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	94	2	1.96975	2.670295	3.37084	0.0123514	1.26042e-4	0.0914865	0.00959902
chr22	49603856	49603956	7602119	0	-	0.4	(0.378,0.408]	chr22	778570	82	INTRON	INTRON	MIR3667HG	ENSG00000188511.13	ENST00000414287.5:ENST00000416411.1:ENST00000689875.1	lncRNA	lncRNA	lncRNA	lncRNA	4	71	2	2.39444	2.670285	2.94613	0.0122858	0.00112461	0.091087	0.0308177
chr2	43971406	43971506	1110365	0	-	0.38	(0.378,0.408]	chr2	119091	73	INTRON	INTRON	LRPPRC	ENSG00000138095.20	ENST00000260665.12:ENST00000682308.1:ENST00000683459.1:ENST00000683623.1:ENST00000683125.1:ENST00000683994.1:ENST00000684619.1:ENST00000683833.1:ENST00000682546.1:ENST00000682585.1:ENST00000683220.1:ENST00000683796.1:ENST00000683590.1:ENST00000684306.1:ENST00000683213.1:ENST00000682779.1:ENST00000682885.1:ENST00000683346.1:ENST00000683072.1:ENST00000682303.1:ENST00000683329.1:ENST00000684383.1:ENST00000682480.1:ENST00000684290.1:ENST00000684341.1:ENST00000682595.1:ENST00000683802.1:ENST00000681961.1:ENST00000683694.1:ENST00000683989.1:ENST00000447246.2:ENST00000409659.6:ENST00000682104.1:ENST00000683934.1:ENST00000681959.1:ENST00000684482.1:ENST00000683082.1:ENST00000409946.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	103	2	2.6411	2.670275	2.69945	0.00174684	9.70462e-4	0.0375932	0.0286926
chr5	72862414	72862513	2387589	0	+	0.424242	(0.408,0.44]	chr5	230388	1	INTRON	INTRON	TNPO1	ENSG00000083312.19	ENST00000680533.1:ENST00000520850.5:ENST00000337273.10:ENST00000680025.1:ENST00000523768.5:ENST00000681711.1:ENST00000518279.5:ENST00000679378.1:ENST00000506351.6:ENST00000506528.5:ENST00000511754.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	51	2	2.33431	2.67013	3.00595	0.0129219	0.00781452	0.0990564	0.0759016
chr7	158747097	158747196	3688976	0	-	0.555556	(0.515,0.57]	chr7	342335	30	INTRON	INTRON	ESYT2	ENSG00000117868.18	ENST00000251527.10:ENST00000275418.13:ENST00000652148.1	protein_coding	protein_coding	protein_coding	protein_coding	3	45	2	2.03361	2.67013	3.30665	0.0325854	0.00213226	0.145164	0.041756
chr3	15766712	15766812	1623507	0	-	0.27	[0,0.28]	chr3	168008	4	SS3_PROX	SS3_PROX:INTRON	ANKRD28	ENSG00000206560.12	ENST00000399451.6:ENST00000624145.3:ENST00000683139.1:ENST00000412318.5:ENST00000497037.5:ENST00000451422.1:ENST00000498524.5:ENST00000439830.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	89	2	2.40162	2.67006	2.9385	0.0142776	0.00511828	0.0963703	0.064713
chr16	3684709	3684807	6434140	0	-	0.55102	(0.515,0.57]	chr16	619345	46	INTRON	INTRON	TRAP1	ENSG00000126602.11	ENST00000246957.10:ENST00000538171.5:ENST00000576335.5:ENST00000571804.5:ENST00000574941.5:ENST00000576106.5:ENST00000571538.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	60	2	1.84511	2.670035	3.49496	0.0167182	9.61701e-4	0.110511	0.0282401
chr17	75233558	75233658	6674569	0	+	0.46	(0.44,0.476]	chr17	651431	4	SS5_PROX	SS5_PROX:INTRON	NUP85	ENSG00000125450.11	ENST00000245544.9:ENST00000579324.5:ENST00000581104.5:ENST00000579298.5:ENST00000583070.5:ENST00000540768.5:ENST00000578294.1:ENST00000579900.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	38	2	2.66433	2.670025	2.67572	0.0212064	0.0194358	0.119831	0.113017
chr7	2062198	2062298	3465218	0	-	0.45	(0.44,0.476]	chr7	324024	472	INTRON	INTRON	MAD1L1	ENSG00000002822.16	ENST00000406869.5:ENST00000399654.6:ENST00000402746.5:ENST00000265854.12:ENST00000438959.5:ENST00000444373.6:ENST00000421113.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	38	2	2.66433	2.670025	2.67572	0.0212064	0.0194358	0.119831	0.113017
chr8	125210583	125210683	3854679	0	+	0.44	(0.408,0.44]	chr8	355249	279	INTRON	INTRON	NSMCE2	ENSG00000156831.8	ENST00000517532.5:ENST00000287437.8:ENST00000522563.5:ENST00000517315.1	protein_coding	protein_coding	protein_coding	protein_coding	3	53	2	2.51492	2.6700150000000002	2.82511	0.0329839	0.00189528	0.133816	0.0402736
chr10	133470080	133470180	4540684	0	+	0.49	(0.476,0.515]	chr10	419151	10	INTRON	INTRON	SCART1	ENSG00000214279.13	ENST00000488261.6	protein_coding	retained_intron	protein_coding	retained_intron	6	80	2	1.38864	2.6699349999999997	3.95123	0.0547008	1.50038e-4	0.182743	0.011202
chr5	126989043	126989143	2714143	0	-	0.45	(0.44,0.476]	chr5	255278	423	INTRON	INTRON	MARCHF3	ENSG00000173926.6	ENST00000308660.6:ENST00000502289.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	82	2	2.18344	2.669915	3.15639	0.0102102	3.93757e-4	0.0850389	0.0178567
chr18	21566802	21566899	6954769	0	-	0.474227	(0.44,0.476]	chr18	688004	2	INTRON	INTRON	ESCO1	ENSG00000141446.11	ENST00000269214.10:ENST00000383276.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	82	2	2.32184	2.66983	3.01782	0.00609071	7.8136e-4	0.0676501	0.0257169
chr9	37141233	37141333	4117865	0	+	0.24	[0,0.28]	chr9	375372	139	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000322831.6:ENST00000461038.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	201	2	2.40493	2.6697949999999997	2.93466	9.92071e-4	9.61017e-4	0.0288654	0.0285129
chr11	46043570	46043670	4944457	0	-	0.4	(0.378,0.408]	chr11	463333	166	INTRON	INTRON	PHF21A	ENSG00000135365.17	ENST00000676320.1:ENST00000323180.10:ENST00000530587.6:ENST00000693049.1:ENST00000690620.1:ENST00000418153.6:ENST00000525676.6:ENST00000689695.1:ENST00000685188.1:ENST00000532883.5:ENST00000524497.5:ENST00000531959.5:ENST00000687985.1:ENST00000693122.1:ENST00000529734.5:ENST00000529782.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	40	2	2.2259	2.66975	3.1136	0.0662381	0.00443339	0.181924	0.061054
chr19	21173958	21174057	7040281	0	+	0.525253	(0.515,0.57]	chr19	701950	37	INTRON	INTRON	ZNF431	ENSG00000196705.8	ENST00000600692.5:ENST00000599296.5:ENST00000594425.5:ENST00000311048.11:ENST00000598331.1	protein_coding	protein_coding	protein_coding	protein_coding	5	73	2	2.11724	2.66971	3.22218	0.0110335	2.98683e-4	0.0927187	0.0160416
chr4	78836885	78836985	1981994	0	+	0.33	(0.32,0.35]	chr4	198479	28	INTRON	INTRON	BMP2K	ENSG00000138756.19	ENST00000389010.7:ENST00000502613.3:ENST00000502871.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	98	2	1.92705	2.669685	3.41232	0.0267365	1.30505e-4	0.123349	0.00983066
chr21	46335965	46336064	7421335	0	+	0.555556	(0.515,0.57]	chr21	756713	8	INTRON	INTRON	PCNT	ENSG00000160299.18	ENST00000466474.6:ENST00000490468.5:ENST00000695525.1:ENST00000695558.1:ENST00000359568.10:ENST00000695526.1:ENST00000480896.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	44	2	2.21273	2.66968	3.12663	0.0196151	0.00374498	0.109486	0.0562234
chr9	130734454	130734554	4214069	0	+	0.51	(0.476,0.515]	chr9	386427	196	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000393293.4	protein_coding	protein_coding	protein_coding	protein_coding	15	222	2	2.18839	2.66961	3.15083	6.55351e-4	9.8384e-6	0.0233526	0.00227957
chr6	47517421	47517521	2873962	0	+	0.51	(0.476,0.515]	chr6	272731	136	INTRON	INTRON	CD2AP	ENSG00000198087.7	ENST00000359314.5	protein_coding	protein_coding	protein_coding	protein_coding	10	158	2	2.58108	2.66953	2.75798	4.74145e-4	1.21235e-4	0.0201638	0.0094154
chr1	111179603	111179702	184128	0	+	0.414141	(0.408,0.44]	chr1	20443	15	EXON_LNCRNA	EXON_LNCRNA:INTRON	CEPT1	ENSG00000134255.15	ENST00000545121.5:ENST00000498239.5:ENST00000357172.9:ENST00000478042.5:ENST00000473474.5:ENST00000467362.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	99	2	2.48326	2.6694899999999997	2.85572	0.00324772	4.26582e-4	0.0508595	0.0184578
chr7	151364941	151365040	3449313	0	+	0.242424	[0,0.28]	chr7	322372	38	INTRON	INTRON	NUB1	ENSG00000013374.17	ENST00000413040.7:ENST00000568733.6:ENST00000470229.6:ENST00000480907.5:ENST00000497987.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	74	2	2.64309	2.669445	2.6958	0.0308646	0.00456758	0.13151	0.0622215
chr2	177320724	177320822	1276421	0	-	0.367347	(0.35,0.378]	chr2	134749	24	INTRON	INTRON	NFE2L2:ENSG00000213963	ENSG00000116044.16:ENSG00000213963.6	ENST00000464747.5:ENST00000397057.6:ENST00000456746.5:ENST00000430416.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	3	57	2	2.04358	2.66944	3.2953	0.0329533	0.0031465	0.145171	0.0500431
chr1	204537233	204537329	297632	0	+	0.385417	(0.378,0.408]	chr1	34294	3	SS3_PROX	SS3_PROX:INTRON	MDM4	ENSG00000198625.14	ENST00000367183.7:ENST00000391947.6:ENST00000454264.6:ENST00000612738.4:ENST00000614459.4:ENST00000616250.4:ENST00000367182.8:ENST00000463049.5:ENST00000470908.5:ENST00000471783.1:ENST00000507825.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	20	317	2	2.54395	2.6694250000000004	2.7949	4.49585e-5	2.96775e-5	0.00579078	0.00433348
chr7	153413504	153413600	3682220	0	-	0.583333	(0.57,1]	chr7	341744	21	EXON_LNCRNA	EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	LINC01287	ENSG00000234722.5	ENST00000647863.1:ENST00000453187.2:ENST00000664249.1:ENST00000663745.1:ENST00000659532.1:ENST00000670362.1:ENST00000669043.1:ENST00000662626.1:ENST00000669109.1:ENST00000657245.1:ENST00000662979.1:ENST00000666243.1:ENST00000661522.1:ENST00000660414.1:ENST00000669159.1:ENST00000658753.1:ENST00000671302.1:ENST00000668024.1:ENST00000669370.1:ENST00000667969.1:ENST00000669818.1:ENST00000661082.1:ENST00000653989.1:ENST00000665909.1:ENST00000658825.1:ENST00000669410.1:ENST00000664034.1:ENST00000670343.1:ENST00000670691.1:ENST00000416982.1	lncRNA	lncRNA	lncRNA	lncRNA	18	154	2	2.47467	2.66932	2.86397	2.17796e-4	5.5894e-7	0.0129418	4.41184e-4
chr4	54059488	54059588	2148292	0	-	0.37	(0.35,0.378]	chr4	211322	98	INTRON	INTRON	CHIC2	ENSG00000109220.11	ENST00000263921.8:ENST00000512964.5:ENST00000510894.1:ENST00000509678.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	43	2	2.39746	2.6692850000000004	2.94111	0.041314	0.0104563	0.161534	0.0855102
chr11	105515828	105515915	5030381	0	-	0.574713	(0.57,1]	chr11	474026	5	UTR5	UTR5:EXON_MRNA:INTRON	CARD18	ENSG00000255501.3	ENST00000649856.1:ENST00000528811.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	66	2	2.52302	2.6692549999999997	2.81549	3.90081e-4	3.16715e-4	0.0177751	0.0164255
chr7	139377354	139377453	3437770	0	+	0.414141	(0.408,0.44]	chr7	320340	8	INTRON	INTRON	LUC7L2:FMC1-LUC7L2	ENSG00000146963.18:ENSG00000269955.2	ENST00000541170.7:ENST00000541515.3:ENST00000608368.5:ENST00000619796.4:ENST00000354926.9:ENST00000456182.5:ENST00000263545.7:ENST00000463912.5:ENST00000498518.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	116	2	2.36228	2.66925	2.97622	0.00528443	7.35724e-5	0.0635846	0.00714826
chr16	11739107	11739206	6445165	0	-	0.373737	(0.35,0.378]	chr16	620837	25	INTRON	INTRON	TXNDC11	ENSG00000153066.13	ENST00000283033.10:ENST00000356957.7:ENST00000576969.5:ENST00000573174.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	57	2	1.75561	2.669235	3.58286	0.0739399	6.77448e-4	0.190914	0.0236287
chr18	9361170	9361270	6870708	0	+	0.29	(0.28,0.32]	chr18	680672	7	INTRON	INTRON	TWSG1	ENSG00000128791.12	ENST00000583147.5:ENST00000262120.10:ENST00000581641.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	48	2	2.2609	2.6691700000000003	3.07744	0.0671429	0.00604536	0.183051	0.0700813
chrX	121272800	121272900	7715918	0	+	0.29	(0.28,0.32]	chrX	789390	866	INTRON	INTRON	ENSG00000286163	ENSG00000286163.1	ENST00000651788.1	lncRNA	lncRNA	lncRNA	lncRNA	2	48	2	2.2609	2.6691700000000003	3.07744	0.0671429	0.00604536	0.183051	0.0700813
chr21	33463070	33463168	7440807	0	-	0.510204	(0.476,0.515]	chr21	759350	22	INTRON	INTRON	TMEM50B	ENSG00000142188.17	ENST00000420455.5:ENST00000542230.7:ENST00000441128.5:ENST00000442441.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	124	2	2.27858	2.66908	3.05958	8.34691e-4	6.66657e-4	0.0266389	0.0233952
chr17	47675540	47675626	6622857	0	+	0.395349	(0.378,0.408]	chr17	646091	4	INTRON	INTRON	KPNB1	ENSG00000108424.11	ENST00000535458.6:ENST00000583648.6:ENST00000290158.9:ENST00000540627.5:ENST00000582097.5:ENST00000677341.1:ENST00000579901.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	53	2	2.05897	2.6690199999999997	3.27907	0.0339294	0.0023379	0.134508	0.0442989
chr3	15049626	15049726	1619880	0	-	0.39	(0.378,0.408]	chr3	167433	75	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	MRPS25	ENSG00000131368.9	ENST00000695375.1:ENST00000695376.1:ENST00000695377.1:ENST00000695378.1:ENST00000695379.1:ENST00000695380.1:ENST00000695381.1:ENST00000695382.1:ENST00000496484.2:ENST00000695334.1:ENST00000695384.1:ENST00000695322.1:ENST00000447299.2:ENST00000695383.1:ENST00000474866.2:ENST00000695385.1:ENST00000695386.1:ENST00000420267.6:ENST00000695387.1:ENST00000695388.1:ENST00000695389.1:ENST00000695390.1:ENST00000695391.1:ENST00000695392.1:ENST00000449354.7:ENST00000695393.1:ENST00000695394.1:ENST00000253686.7:ENST00000695395.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	53	2	2.05897	2.6690199999999997	3.27907	0.0339294	0.0023379	0.134508	0.0442989
chr7	156871674	156871774	3687803	0	-	0.31	(0.28,0.32]	chr7	342096	344	INTRON	INTRON	LMBR1	ENSG00000105983.23	ENST00000353442.10:ENST00000415428.5:ENST00000454132.5:ENST00000434503.5:ENST00000430278.5:ENST00000434278.5:ENST00000444719.5:ENST00000461469.5:ENST00000414218.1:ENST00000434453.1:ENST00000498034.5:ENST00000433968.5:ENST00000485985.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	105	2	2.56765	2.66901	2.7703700000000002	0.00835086	8.96564e-4	0.0774402	0.0273866
chr22	23186915	23187015	7483267	0	+	0.58	(0.57,1]	chr22	763531	43	INTRON	INTRON	BCR	ENSG00000186716.21	ENST00000479188.5:ENST00000359540.7:ENST00000305877.13	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	34	2	2.30825	2.6689600000000002	3.02967	0.00499769	0.00471306	0.0631419	0.0617433
chr14	81177041	81177140	5935451	0	-	0.242424	[0,0.28]	chr14	564109	17	UTR3	UTR3:EXON_MRNA	GTF2A1	ENSG00000165417.12	ENST00000553612.6	protein_coding	protein_coding	protein_coding	protein_coding	3	73	2	2.56073	2.668945	2.77716	0.022039	0.00743095	0.115395	0.0772645
chr15	30651117	30651216	5992529	0	+	0.232323	[0,0.28]	chr15	569759	17	INTRON	INTRON	ENSG00000284906:ENSG00000285035	ENSG00000284906.3:ENSG00000285035.2	ENST00000685924.1:ENST00000563110.6:ENST00000642399.2:ENST00000566548.5	protein_coding	protein_coding	protein_coding:transcribed_unprocessed_pseudogene	protein_coding:nonsense_mediated_decay:processed_transcript:transcribed_unprocessed_pseudogene	3	73	2	2.56073	2.668945	2.77716	0.022039	0.00743095	0.115395	0.0772645
chr15	30489333	30489431	5992232	0	+	0.520408	(0.515,0.57]	chr15	569674	15	EXON_LNCRNA	EXON_LNCRNA	ENSG00000270055	ENSG00000270055.1	ENST00000602663.1	lncRNA	lncRNA	lncRNA	lncRNA	7	97	2	2.38494	2.668935	2.95293	0.00164178	2.71022e-4	0.0373835	0.0150944
chr4	56443458	56443558	1962691	0	+	0.4	(0.378,0.408]	chr4	196872	12	INTRON	INTRON	PAICS	ENSG00000128050.9	ENST00000514888.5:ENST00000264221.6:ENST00000505164.5:ENST00000399688.7:ENST00000512576.3	protein_coding	protein_coding	protein_coding	protein_coding	6	98	2	2.1516	2.6688400000000003	3.18608	0.0065185	3.50013e-4	0.0699952	0.0166791
chr7	731643	731742	3267896	0	+	0.282828	(0.28,0.32]	chr7	303447	14	INTRON	INTRON	DNAAF5	ENSG00000164818.16	ENST00000297440.11:ENST00000437419.5:ENST00000438961.1:ENST00000440747.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	105	2	2.41625	2.6688349999999996	2.92142	0.00419958	0.00234443	0.0592209	0.0434875
chr11	93799195	93799293	4848904	0	+	0.571429	(0.57,1]	chr11	452324	11	INTRON	INTRON	MED17	ENSG00000042429.12	ENST00000640583.1:ENST00000640804.1:ENST00000638487.1:ENST00000639596.1:ENST00000251871.9:ENST00000640027.1:ENST00000639189.1:ENST00000525026.6:ENST00000533133.6:ENST00000639724.1:ENST00000639457.1:ENST00000640473.1:ENST00000640451.1:ENST00000507258.4:ENST00000640521.1:ENST00000638518.1:ENST00000638790.1:ENST00000639523.1:ENST00000640077.1:ENST00000529626.2:ENST00000533367.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	33	2	2.24434	2.668735	3.09313	0.00677343	0.00369015	0.074225	0.0535094
chr11	95771077	95771173	5019409	0	-	0.291667	(0.28,0.32]	chr11	473572	23	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	FAM76B	ENSG00000077458.13	ENST00000358780.10:ENST00000398187.6:ENST00000543641.5:ENST00000536839.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	77	2	2.06884	2.6686699999999997	3.2685	0.0152581	0.00432734	0.108569	0.0579331
chr15	43861786	43861886	6012994	0	+	0.31	(0.28,0.32]	chr15	572812	4	SS5_PROX	SS5_PROX:INTRON	WDR76	ENSG00000092470.12	ENST00000381246.6:ENST00000263795.11:ENST00000478130.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	48	2	2.60656	2.668665	2.73077	0.0256827	0.0220748	0.133676	0.115395
chr6	28358428	28358527	2840111	0	+	0.292929	(0.28,0.32]	chr6	266673	77	INTRON	INTRON	ZKSCAN3	ENSG00000189298.14	ENST00000252211.7:ENST00000377255.3:ENST00000341464.9	protein_coding	protein_coding	protein_coding	protein_coding	2	48	2	2.60656	2.668665	2.73077	0.0256827	0.0220748	0.133676	0.115395
chr6	89843989	89844087	2916585	0	+	0.295918	(0.28,0.32]	chr6	275602	27	INTRON	INTRON	CASP8AP2	ENSG00000118412.13	ENST00000552401.5:ENST00000419040.6:ENST00000547893.5:ENST00000237177.10:ENST00000551025.4:ENST00000548224.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	48	2	2.60656	2.668665	2.73077	0.0256827	0.0220748	0.133676	0.115395
chr7	135961729	135961829	3649316	0	-	0.3	(0.28,0.32]	chr7	339214	97	INTRON	INTRON	MTPN	ENSG00000105887.11	ENST00000393085.4:ENST00000435723.1	protein_coding	protein_coding	protein_coding	protein_coding	2	48	2	2.60656	2.668665	2.73077	0.0256827	0.0220748	0.133676	0.115395
chr11	63696559	63696659	4800064	0	+	0.56	(0.515,0.57]	chr11	444936	144	INTRON	INTRON	RTN3	ENSG00000133318.14	ENST00000341307.6:ENST00000356000.7:ENST00000542238.5:ENST00000538995.1:ENST00000339997.8:ENST00000540798.5:ENST00000537981.5:ENST00000377819.10:ENST00000536011.5:ENST00000543123.1:ENST00000543552.5:ENST00000545432.5:ENST00000338850.5:ENST00000354497.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	96	2	2.64171	2.668565	2.69542	0.00130576	3.15632e-4	0.0331539	0.0159645
chrX	124034178	124034276	7717484	0	+	0.387755	(0.378,0.408]	chrX	789506	27	INTRON	INTRON	STAG2	ENSG00000101972.20	ENST00000218089.13:ENST00000455404.5:ENST00000483575.5:ENST00000687810.1:ENST00000687071.1:ENST00000469481.1:ENST00000371160.5:ENST00000435103.5:ENST00000687852.1:ENST00000371145.8:ENST00000692982.1:ENST00000371157.7:ENST00000691035.1:ENST00000686802.1:ENST00000691383.1:ENST00000686127.1:ENST00000371144.7:ENST00000458176.5:ENST00000466748.5:ENST00000471107.1:ENST00000428941.5:ENST00000435215.5:ENST00000394478.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	91	2	2.21238	2.6685	3.12462	0.0218124	1.00937e-4	0.11491	0.00848303
chr11	129894738	129894838	5051902	0	-	0.37	(0.35,0.378]	chr11	476790	3	SS3_PROX	SS3_PROX:INTRON	NFRKB	ENSG00000170322.15	ENST00000682444.1:ENST00000530278.5:ENST00000529319.5:ENST00000532225.5:ENST00000526884.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	90	2	2.56071	2.6684799999999997	2.77625	0.00725312	7.04769e-4	0.072984	0.0241881
chr16	84736167	84736265	6410273	0	+	0.367347	(0.35,0.378]	chr16	615290	23	INTRON	INTRON	USP10	ENSG00000103194.16	ENST00000562743.5:ENST00000540269.6:ENST00000563892.5:ENST00000562092.1:ENST00000219473.12:ENST00000570191.5:ENST00000563048.5:ENST00000562283.5:ENST00000563386.5:ENST00000569038.5:ENST00000570053.1:ENST00000566512.1:ENST00000563023.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	55	2	2.39583	2.66847	2.94111	0.0107976	0.0104563	0.0920575	0.0855102
chrX	154686834	154686934	7914669	0	-	0.36	(0.35,0.378]	chrX	806068	62	INTRON	INTRON	GAB3	ENSG00000160219.12	ENST00000496390.5:ENST00000424127.3:ENST00000369575.7:ENST00000369568.8:ENST00000475685.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	55	2	2.39583	2.66847	2.94111	0.0107976	0.0104563	0.0920575	0.0855102
chr7	148817488	148817585	3670079	0	-	0.360825	(0.35,0.378]	chr7	340569	2	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	EZH2	ENSG00000106462.12	ENST00000683292.1:ENST00000320356.7:ENST00000492143.5:ENST00000478654.5:ENST00000350995.6:ENST00000460911.5:ENST00000683744.1:ENST00000684510.1:ENST00000682317.1:ENST00000683293.1:ENST00000682263.1:ENST00000684300.1:ENST00000476773.5:ENST00000483967.5:ENST00000684436.1:ENST00000498186.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	152	2	2.66576	2.668445	2.67113	0.00168985	1.24966e-4	0.037084	0.00954818
chr1	154350012	154350111	228405	0	+	0.353535	(0.35,0.378]	chr1	26549	10	UTR3	UTR3:EXON_MRNA	ATP8B2	ENSG00000143515.20	ENST00000368489.6:ENST00000672630.1	protein_coding	protein_coding	protein_coding	protein_coding	5	77	2	1.71411	2.668415	3.62272	0.0310697	5.64719e-4	0.13151	0.021704
chr1	12349068	12349163	29467	0	+	0.442105	(0.44,0.476]	chr1	3627	2	EXON_MRNA	EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	VPS13D	ENSG00000048707.15	ENST00000620676.6:ENST00000613099.4:ENST00000011700.10:ENST00000646917.1:ENST00000460333.5:ENST00000469054.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	51	2	2.02558	2.66834	3.3111	0.0363567	0.0020006	0.138959	0.0412555
chr3	25749105	25749204	1642493	0	-	0.343434	(0.32,0.35]	chr3	168658	83	INTRON	INTRON	NGLY1	ENSG00000151092.18	ENST00000280700.10:ENST00000428257.5:ENST00000675217.1:ENST00000676225.1:ENST00000493324.5:ENST00000396649.7:ENST00000675178.1:ENST00000675680.1:ENST00000308710.9:ENST00000280699.13:ENST00000674841.1:ENST00000675234.1:ENST00000463611.2:ENST00000417874.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	160	2	2.33471	2.6683149999999998	3.00192	9.111e-4	4.24805e-4	0.0277409	0.0189958
chr6	24415896	24415996	2835516	0	+	0.55	(0.515,0.57]	chr6	265766	1	SS3_PROX	SS3_PROX:INTRON	MRS2	ENSG00000124532.15	ENST00000274747.11:ENST00000443868.6:ENST00000378386.8:ENST00000378353.5:ENST00000483634.1:ENST00000446191.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	44	2	2.57298	2.66826	2.76354	0.0147344	0.00506495	0.0983813	0.0646039
chr19	28493351	28493451	7166028	0	-	0.5	(0.476,0.515]	chr19	724189	251	INTRON	INTRON	ENSG00000283403:ENSG00000267243	ENSG00000283403.1:ENSG00000267243.6	ENST00000592347.5:ENST00000593065.5	lncRNA	lncRNA	lncRNA	lncRNA	5	82	2	2.09697	2.668215	3.23946	0.0136924	2.59571e-4	0.0949306	0.014326
chr6	147217860	147217960	2988842	0	+	0.28	[0,0.28]	chr6	280001	114	INTRON	INTRON	STXBP5	ENSG00000164506.15	ENST00000321680.11:ENST00000367481.7:ENST00000546097.5:ENST00000367480.7	protein_coding	protein_coding	protein_coding	protein_coding	3	74	2	2.24053	2.6682	3.09587	0.0256186	0.00651565	0.120376	0.0735232
chr11	85977669	85977769	5013900	0	-	0.37	(0.35,0.378]	chr11	472919	2	SS5_PROX	SS5_PROX:INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000530692.5:ENST00000630913.2:ENST00000529760.5:ENST00000528398.5:ENST00000532603.5:ENST00000356360.9:ENST00000529016.5:ENST00000526961.5:ENST00000526907.1:ENST00000530542.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	112	2	1.36415	2.66815	3.97215	0.0288188	1.84105e-4	0.14021	0.0123213
chr2	10180720	10180819	691311	0	+	0.383838	(0.378,0.408]	chr2	81109	246	INTRON	INTRON	RRM2	ENSG00000171848.16	ENST00000641498.1:ENST00000381786.7	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	3	55	2	2.47752	2.66803	2.85854	0.0107837	0.0092831	0.0920575	0.0817766
chr2	135754777	135754856	876066	0	+	0.405063	(0.378,0.408]	chr2	98070	1	INTRON	INTRON	UBXN4	ENSG00000144224.17	ENST00000426921.5:ENST00000272638.14:ENST00000416538.5:ENST00000470687.1:ENST00000490163.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	64	2	1.73164	2.667965	3.60429	0.0441773	5.71664e-4	0.149888	0.0217398
chr1	31014999	31015099	412386	0	-	0.21	[0,0.28]	chr1	49725	75	INTRON	INTRON	PUM1	ENSG00000134644.16	ENST00000426105.7:ENST00000373747.7:ENST00000257075.9:ENST00000424085.6:ENST00000525843.5:ENST00000440538.6:ENST00000373741.8:ENST00000373742.6:ENST00000526215.5:ENST00000525948.5:ENST00000480602.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	75	2	2.54624	2.667825	2.78941	0.0388449	0.00320409	0.143072	0.0521823
chr5	55323059	55323154	2355234	0	+	0.263158	[0,0.28]	chr5	227129	2	INTRON	INTRON	MTREX	ENSG00000039123.16	ENST00000230640.10:ENST00000506750.5:ENST00000504388.5:ENST00000503165.5:ENST00000504997.1:ENST00000505565.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	54	2	2.33055	2.667765	3.00498	0.062338	0.00876063	0.175343	0.0846118
chr16	85471501	85471601	6414545	0	+	0.48	(0.476,0.515]	chr16	615465	1122	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	3	53	2	1.91817	2.667725	3.41728	0.0459211	0.00165726	0.164984	0.0369207
chr2	53926615	53926708	1120119	0	-	0.537634	(0.515,0.57]	chr2	120034	2	INTRON	INTRON	PSME4	ENSG00000068878.15	ENST00000404125.6:ENST00000389993.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	57	2	2.60899	2.6677049999999998	2.72642	0.0232669	7.31116e-4	0.118148	0.0246497
chr1	167660391	167660491	247262	0	+	0.41	(0.408,0.44]	chr1	29437	185	INTRON	INTRON	RCSD1	ENSG00000198771.11	ENST00000537350.5:ENST00000361496.3:ENST00000367854.8:ENST00000472038.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	38	2	2.51492	2.66767	2.82042	0.0329839	0.0120121	0.133816	0.0962115
chr16	23894152	23894252	6324342	0	+	0.44	(0.408,0.44]	chr16	605701	4	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000498739.1	protein_coding	protein_coding	protein_coding	protein_coding	2	38	2	2.51492	2.66767	2.82042	0.0329839	0.0120121	0.133816	0.0962115
chr17	38894701	38894801	6606654	0	+	0.43	(0.408,0.44]	chr17	643201	38	INTRON	INTRON	LASP1	ENSG00000002834.18	ENST00000433206.6:ENST00000585841.5:ENST00000318008.11:ENST00000443937.7:ENST00000584106.1:ENST00000435347.7:ENST00000419929.1:ENST00000581485.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	38	2	2.51492	2.66767	2.82042	0.0329839	0.0120121	0.133816	0.0962115
chr5	53942719	53942819	2617231	0	-	0.43	(0.408,0.44]	chr5	248835	307	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	38	2	2.51492	2.66767	2.82042	0.0329839	0.0120121	0.133816	0.0962115
chr1	167977311	167977411	248899	0	+	0.31	(0.28,0.32]	chr1	29564	19	INTRON	INTRON	DCAF6	ENSG00000143164.16	ENST00000450548.5:ENST00000470919.5:ENST00000432587.6:ENST00000367843.7:ENST00000470721.5:ENST00000367840.4:ENST00000312263.10:ENST00000455334.5:ENST00000491067.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	64	2	2.55521	2.667625	2.78004	0.0193244	0.0067419	0.108861	0.0739405
chr9	37231611	37231711	4118773	0	+	0.33	(0.32,0.35]	chr9	375389	447	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000461038.5:ENST00000488607.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	81	2	2.05666	2.66762	3.27858	0.00840213	0.00368368	0.0824581	0.0535094
chr1	65347815	65347914	136474	0	+	0.353535	(0.35,0.378]	chr1	15358	17	INTRON	INTRON	DNAJC6	ENSG00000116675.16	ENST00000463018.5:ENST00000494710.6:ENST00000263441.11:ENST00000395325.7:ENST00000483402.1:ENST00000371069.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	41	2	2.47065	2.66758	2.86451	0.0386172	0.0109111	0.142656	0.0923273
chr15	52058897	52058997	6029422	0	+	0.36	(0.35,0.378]	chr15	574452	1	SS5_PROX	SS5_PROX:INTRON	MAPK6	ENSG00000069956.14	ENST00000691380.1:ENST00000681888.1:ENST00000261845.7:ENST00000680066.1:ENST00000680777.1:ENST00000680652.1	protein_coding	protein_coding	protein_coding	protein_coding	2	41	2	2.47065	2.66758	2.86451	0.0386172	0.0109111	0.142656	0.0923273
chr15	60463393	60463493	6195852	0	-	0.36	(0.35,0.378]	chr15	590445	62	INTRON	INTRON	ICE2	ENSG00000128915.12	ENST00000261520.9:ENST00000558181.5:ENST00000561114.5:ENST00000558512.5:ENST00000560895.5:ENST00000561446.5:ENST00000560668.5:ENST00000561087.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	41	2	2.47065	2.66758	2.86451	0.0386172	0.0109111	0.142656	0.0923273
chr5	150741813	150741913	2751726	0	-	0.37	(0.35,0.378]	chr5	259260	3	SS5_PROX	SS5_PROX:INTRON	DCTN4	ENSG00000132912.13	ENST00000447998.7:ENST00000424236.5:ENST00000446090.6:ENST00000627368.2:ENST00000521728.5:ENST00000519313.5:ENST00000518015.5:ENST00000521448.5:ENST00000521533.1:ENST00000521093.1:ENST00000517421.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	41	2	2.47065	2.66758	2.86451	0.0386172	0.0109111	0.142656	0.0923273
chr9	5046112	5046211	4096435	0	+	0.373737	(0.35,0.378]	chr9	373255	12	INTRON	INTRON	JAK2	ENSG00000096968.14	ENST00000636127.1:ENST00000381652.4	protein_coding	protein_coding	protein_coding	protein_coding	2	41	2	2.47065	2.66758	2.86451	0.0386172	0.0109111	0.142656	0.0923273
chr1	696226	696326	356910	0	-	0.33	(0.32,0.35]	chr1	41087	632	INTRON	INTRON	ENSG00000230021	ENSG00000230021.10	ENST00000419394.2:ENST00000634337.2:ENST00000635509.2:ENST00000648019.1:ENST00000440200.5	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	2	45	2	2.48693	2.6675250000000004	2.84812	0.0338094	0.0147575	0.146709	0.0983813
chr2	113713497	113713597	1216377	0	-	0.26	[0,0.28]	chr2	129449	69	UTR3	UTR3:EXON_MRNA:INTRON	SLC35F5	ENSG00000115084.15	ENST00000469702.5:ENST00000245680.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	54	2	2.64309	2.6674800000000003	2.69187	0.0308646	0.0221271	0.13151	0.123903
chr21	14528076	14528176	7428022	0	-	0.32	(0.28,0.32]	chr21	757769	43	INTRON	INTRON	SAMSN1	ENSG00000155307.19	ENST00000647101.1:ENST00000644288.1:ENST00000400564.5:ENST00000400566.6:ENST00000285670.7:ENST00000619120.4:ENST00000493640.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	64	2	2.28998	2.667415	3.04485	0.0166401	0.00894006	0.110511	0.0799922
chrX	300119	300217	7605459	0	+	0.479592	(0.476,0.515]	chrX	779420	9	UTR3	UTR3:EXON_MRNA	PLCXD1	ENSG00000182378.15	ENST00000399012.6:ENST00000381657.8	protein_coding	protein_coding	protein_coding	protein_coding	3	52	2	2.45598	2.667385	2.87879	0.00999149	0.00945755	0.0879541	0.0817766
chr12	108541375	108541474	5405556	0	-	0.40404	(0.378,0.408]	chr12	515889	19	INTRON	INTRON	SART3	ENSG00000075856.12	ENST00000546815.6:ENST00000651280.1:ENST00000228284.8:ENST00000546728.5:ENST00000431469.6:ENST00000547528.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	53	2	2.00398	2.6671199999999997	3.33026	0.0393906	0.00189824	0.143072	0.0402736
chr2	187466258	187466355	1288628	0	-	0.391753	(0.378,0.408]	chr2	135559	22	UTR3	UTR3:EXON_MRNA	TFPI	ENSG00000003436.16	ENST00000233156.9:ENST00000392365.5	protein_coding	protein_coding	protein_coding	protein_coding	3	53	2	2.00398	2.6671199999999997	3.33026	0.0393906	0.00189824	0.143072	0.0402736
chr10	94605209	94605309	4500237	0	+	0.49	(0.476,0.515]	chr10	414337	32	INTRON	INTRON	ENSG00000244332:HELLS	ENSG00000244332.1:ENSG00000119969.15	ENST00000432120.1:ENST00000371327.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	2	40	2	2.28264	2.66708	3.05152	0.0534132	0.0064848	0.179876	0.0699952
chr8	128068768	128068868	3862833	0	+	0.51	(0.476,0.515]	chr8	355564	3	SS3_PROX	SS3_PROX:INTRON	PVT1	ENSG00000249859.13	ENST00000667305.1:ENST00000690350.1:ENST00000653522.1:ENST00000661830.1:ENST00000657289.1:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000657211.1:ENST00000653845.1:ENST00000651587.1:ENST00000692980.1:ENST00000654324.1:ENST00000657693.1:ENST00000666080.1:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000662410.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000657356.1:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000667714.1:ENST00000654105.1:ENST00000664995.1:ENST00000670714.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000668123.1:ENST00000666776.1:ENST00000659912.1:ENST00000670532.1:ENST00000523068.2:ENST00000671088.1:ENST00000663461.1:ENST00000513868.6:ENST00000692433.1:ENST00000523190.7:ENST00000685606.1:ENST00000690788.1:ENST00000685634.1:ENST00000653990.1:ENST00000655783.1:ENST00000656411.1:ENST00000664742.1:ENST00000655099.1:ENST00000662709.1:ENST00000512617.7:ENST00000660122.1:ENST00000666452.1:ENST00000659666.1:ENST00000659892.1:ENST00000521600.5:ENST00000522875.5:ENST00000653497.1:ENST00000668098.1:ENST00000659106.1:ENST00000666147.1:ENST00000658350.1:ENST00000656999.1:ENST00000664610.1:ENST00000671092.1:ENST00000653853.1:ENST00000652492.1:ENST00000658429.1:ENST00000660781.1:ENST00000660912.1:ENST00000650930.1:ENST00000663715.1:ENST00000652883.1:ENST00000657844.1:ENST00000660659.1:ENST00000661391.1:ENST00000660146.1:ENST00000671587.1:ENST00000658018.1:ENST00000666878.1:ENST00000652993.1:ENST00000658305.1:ENST00000656077.1:ENST00000666039.1:ENST00000668619.1:ENST00000668479.1:ENST00000660069.1:ENST00000658158.1:ENST00000652728.1:ENST00000653608.1:ENST00000669509.1:ENST00000522414.2:ENST00000670535.1:ENST00000670009.1:ENST00000668215.1:ENST00000668351.1:ENST00000657682.1:ENST00000657945.1:ENST00000658065.1:ENST00000655148.1:ENST00000666223.1:ENST00000666105.1:ENST00000668480.1	lncRNA	lncRNA	lncRNA	lncRNA	2	40	2	2.28264	2.66708	3.05152	0.0534132	0.0064848	0.179876	0.0699952
chrX	113846299	113846399	7866502	0	-	0.5	(0.476,0.515]	chrX	801544	2301	EXON_LNCRNA	EXON_LNCRNA:INTRON	XACT	ENSG00000241743.4	ENST00000468762.3:ENST00000674361.1	lncRNA	lncRNA	lncRNA	lncRNA	2	40	2	2.28264	2.66708	3.05152	0.0534132	0.0064848	0.179876	0.0699952
chr19	3510062	3510162	7000707	0	+	0.47	(0.44,0.476]	chr19	694239	32	INTRON	INTRON	FZR1	ENSG00000105325.15	ENST00000441788.7:ENST00000652521.1:ENST00000588327.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	68	2	2.59632	2.667065	2.73781	0.00579248	0.00276493	0.0662959	0.04867
chr16	69321270	69321369	6379186	0	+	0.555556	(0.515,0.57]	chr16	613086	1	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	ENSG00000260914:VPS4A	ENSG00000260914.3:ENSG00000132612.16	ENST00000570054.3:ENST00000254950.13:ENST00000564399.1:ENST00000566354.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	73	2	1.48827	2.6670499999999997	3.84583	0.0301583	1.82082e-4	0.142572	0.0122264
chr3	47655016	47655115	1683780	0	-	0.383838	(0.378,0.408]	chr3	171996	159	INTRON	INTRON	SMARCC1	ENSG00000173473.11	ENST00000254480.10:ENST00000425518.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	63	2	2.14029	2.666985	3.19368	0.0106742	0.00426861	0.0917199	0.0573912
chr15	58712777	58712877	6193145	0	-	0.52	(0.515,0.57]	chr15	589982	50	INTRON	INTRON	ADAM10	ENSG00000137845.15	ENST00000260408.8:ENST00000402627.5:ENST00000561288.1:ENST00000559053.1:ENST00000558733.5:ENST00000439637.5:ENST00000497846.5:ENST00000558004.1:ENST00000560608.5:ENST00000561149.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	46	2	2.58624	2.66698	2.74772	0.0142192	0.00526399	0.103638	0.0633874
chr11	117233569	117233667	4869440	0	+	0.408163	(0.378,0.408]	chr11	454484	4	INTRON	INTRON	RNF214	ENSG00000167257.11	ENST00000534428.5:ENST00000300650.9:ENST00000529869.1:ENST00000531452.5:ENST00000531287.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	53	2	2.16303	2.66696	3.17089	0.0252473	0.00357279	0.12011	0.0548435
chr18	21596999	21597099	6955079	0	-	0.34	(0.32,0.35]	chr18	688036	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	ESCO1	ENSG00000141446.11	ENST00000269214.10:ENST00000383276.1:ENST00000580101.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	95	2	2.29792	2.666945	3.03597	0.00832487	0.00175304	0.0774402	0.0387108
chr19	28533200	28533300	7166427	0	-	0.21	[0,0.28]	chr19	724189	650	INTRON	INTRON	ENSG00000283403:ENSG00000267243	ENSG00000283403.1:ENSG00000267243.6	ENST00000592347.5:ENST00000593065.5	lncRNA	lncRNA	lncRNA	lncRNA	15	347	2	2.5494	2.6668849999999997	2.78437	7.28337e-4	6.34421e-5	0.0248495	0.00658818
chr3	196367527	196367627	1899003	0	-	0.47	(0.44,0.476]	chr3	190165	1	SS5_PROX	SS5_PROX:INTRON	UBXN7	ENSG00000163960.12	ENST00000296328.9:ENST00000429160.1:ENST00000428095.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	61	2	1.98146	2.666865	3.35227	0.0186013	0.0022005699999999998	0.117264	0.0417893
chr20	50600681	50600780	7354518	0	-	0.515152	(0.476,0.515]	chr20	750001	26	INTRON	INTRON	RIPOR3	ENSG00000042062.13	ENST00000327979.8:ENST00000045083.6:ENST00000462493.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	11	169	2	2.3725	2.6668149999999997	2.96113	5.6462e-4	8.2239e-5	0.021937	0.00761395
chr9	37205236	37205336	4118509	0	+	0.42	(0.408,0.44]	chr9	375389	183	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000461038.5:ENST00000488607.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	105	2	1.85142	2.6667300000000003	3.48204	0.0127811	6.71132e-5	0.0926667	0.00678102
chr10	69392904	69393001	4446637	0	+	0.319588	(0.28,0.32]	chr10	410309	2	INTRON	INTRON	HK1	ENSG00000156515.24	ENST00000436817.6:ENST00000360289.6:ENST00000448642.6:ENST00000643399.2:ENST00000298649.8:ENST00000359426.7:ENST00000493591.6:ENST00000470050.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	146	2	2.51557	2.66673	2.81789	0.00201402	7.16126e-4	0.04086	0.0244108
chr16	30299090	30299182	6473005	0	-	0.413043	(0.408,0.44]	chr16	625691	1	INTRON	INTRON	SMG1P5	ENSG00000183604.15	ENST00000529428.5:ENST00000411546.4:ENST00000691460.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	2	39	2	2.49258	2.6666749999999997	2.84077	0.0314608	0.0132196	0.144381	0.0940535
chr18	759425	759525	6940173	0	-	0.43	(0.408,0.44]	chr18	686511	22	INTRON	INTRON	YES1	ENSG00000176105.14	ENST00000584307.5:ENST00000314574.5:ENST00000577961.5:ENST00000577611.1:ENST00000581960.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	39	2	2.49258	2.6666749999999997	2.84077	0.0314608	0.0132196	0.144381	0.0940535
chr1	20766891	20766987	389656	0	-	0.40625	(0.378,0.408]	chr1	46543	10	INTRON	INTRON	HP1BP3	ENSG00000127483.19	ENST00000438032.6:ENST00000312239.10:ENST00000375003.6:ENST00000419948.5:ENST00000424732.5	protein_coding	protein_coding	protein_coding	protein_coding	3	55	2	2.46373	2.66664	2.86955	0.0382831	0.00159247	0.141795	0.0367961
chr10	38104100	38104199	4427550	0	+	0.484848	(0.476,0.515]	chr10	408039	71	INTRON	INTRON	ZNF37A	ENSG00000075407.19	ENST00000638053.1:ENST00000351773.7:ENST00000685332.1:ENST00000361085.9:ENST00000479469.5:ENST00000477790.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	38	2	2.56868	2.66664	2.7646	0.0256676	0.0162075	0.133676	0.101453
chr16	18156177	18156277	6454196	0	-	0.48	(0.476,0.515]	chr16	621964	47	INTRON	INTRON	ENSG00000260242	ENSG00000260242.1	ENST00000563866.1	lncRNA	lncRNA	lncRNA	lncRNA	2	38	2	2.56868	2.66664	2.7646	0.0256676	0.0162075	0.133676	0.101453
chr2	200884568	200884664	1310266	0	-	0.479167	(0.476,0.515]	chr2	137090	18	INTRON	INTRON	PPIL3	ENSG00000240344.9	ENST00000286175.12:ENST00000392283.9:ENST00000465823.5:ENST00000415562.5:ENST00000409264.6:ENST00000409361.5:ENST00000409449.5:ENST00000497263.5:ENST00000443398.5:ENST00000457063.1:ENST00000492074.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	38	2	2.56868	2.66664	2.7646	0.0256676	0.0162075	0.133676	0.101453
chr7	64825543	64825643	3320661	0	+	0.48	(0.476,0.515]	chr7	308722	95	INTRON	INTRON	ZNF138	ENSG00000197008.10	ENST00000359735.7:ENST00000440155.6:ENST00000494380.5:ENST00000307355.12:ENST00000437743.1:ENST00000440598.2:ENST00000430838.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	38	2	2.56868	2.66664	2.7646	0.0256676	0.0162075	0.133676	0.101453
chr12	70319864	70319963	5167211	0	+	0.363636	(0.35,0.378]	chr12	489433	1	INTRON	INTRON	CNOT2	ENSG00000111596.14	ENST00000418359.7:ENST00000552319.5:ENST00000550160.5:ENST00000551132.5:ENST00000548021.5:ENST00000550641.6:ENST00000229195.8:ENST00000552915.5:ENST00000549443.5:ENST00000552483.5:ENST00000547321.5:ENST00000548159.5:ENST00000549750.5:ENST00000551043.5:ENST00000548599.5:ENST00000550194.5:ENST00000551873.5:ENST00000552151.2:ENST00000548863.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	55	2	2.34278	2.66661	2.99044	0.0129593	0.00894806	0.0991015	0.0799922
chr10	37842307	37842407	4602446	0	-	0.36	(0.35,0.378]	chr10	423985	38	INTRON	INTRON	ZNF248	ENSG00000198105.16	ENST00000615949.6:ENST00000485560.5:ENST00000395867.8:ENST00000357328.8:ENST00000611278.4:ENST00000374648.7:ENST00000395873.7:ENST00000395874.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	104	2	1.78162	2.6664849999999998	3.55135	0.0251606	5.25585e-5	0.12011	0.00591845
chr7	77712433	77712532	3343229	0	+	0.484848	(0.476,0.515]	chr7	311432	147	INTRON	INTRON	RSBN1L	ENSG00000187257.16	ENST00000334955.13:ENST00000445288.5	protein_coding	protein_coding	protein_coding	protein_coding	7	103	2	2.21639	2.66643	3.11647	0.00224357	6.41912e-4	0.0435144	0.0231685
chr20	47338056	47338156	7349325	0	-	0.48	(0.476,0.515]	chr20	749346	191	INTRON	INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000435836.5:ENST00000446894.5:ENST00000441977.1	protein_coding	protein_coding	protein_coding	protein_coding	3	51	2	2.13304	2.6663949999999996	3.19975	0.024866	0.00383299	0.132101	0.0542786
chr10	6167008	6167107	4386215	0	+	0.585859	(0.57,1]	chr10	404834	26	INTRON	INTRON	PFKFB3	ENSG00000170525.21	ENST00000379789.8:ENST00000536985.6:ENST00000639949.1	protein_coding	protein_coding	protein_coding	protein_coding	2	21	2	2.53383	2.66636	2.79889	0.02547	0.0110274	0.12011	0.0927187
chr2	85616463	85616563	822012	0	+	0.62	(0.57,1]	chr2	91635	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	USP39	ENSG00000168883.20	ENST00000459775.5:ENST00000491659.5:ENST00000474572.6:ENST00000450066.6:ENST00000613444.4:ENST00000448971.5:ENST00000442708.5:ENST00000465282.5:ENST00000409025.5:ENST00000455732.5:ENST00000409470.5:ENST00000323701.11:ENST00000458268.5:ENST00000409766.7:ENST00000493829.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	21	2	2.53383	2.66636	2.79889	0.02547	0.0110274	0.12011	0.0927187
chr1	42947618	42947718	433031	0	-	0.52	(0.515,0.57]	chr1	52495	39	INTRON	INTRON	SLC2A1	ENSG00000117394.24	ENST00000426263.10:ENST00000630287.2:ENST00000675112.1:ENST00000674765.1:ENST00000625233.2:ENST00000372500.4:ENST00000415851.6:ENST00000630821.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	110	2	2.63844	2.6663050000000004	2.69417	4.34654e-4	3.9815e-4	0.0187509	0.0185763
chr18	21806707	21806806	6880404	0	+	0.575758	(0.57,1]	chr18	681925	23	INTRON	INTRON	MIB1	ENSG00000101752.13	ENST00000578646.5:ENST00000261537.7:ENST00000577749.5:ENST00000578260.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	21	2	2.66438	2.666195	2.66801	0.0171563	0.0169968	0.110899	0.104099
chr3	52278039	52278139	1698976	0	-	0.69	(0.57,1]	chr3	174721	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	WDR82	ENSG00000164091.12	ENST00000296490.8:ENST00000469000.5:ENST00000463624.1	protein_coding	protein_coding	protein_coding	protein_coding	2	21	2	2.66438	2.666195	2.66801	0.0171563	0.0169968	0.110899	0.104099
chr6	97226497	97226597	3164192	0	-	0.6	(0.57,1]	chr6	295089	395	INTRON	INTRON	MMS22L	ENSG00000146263.12	ENST00000683635.1:ENST00000275053.8:ENST00000369251.6	protein_coding	protein_coding	protein_coding	protein_coding	2	21	2	2.66438	2.666195	2.66801	0.0171563	0.0169968	0.110899	0.104099
chr8	99053928	99054028	3811665	0	+	0.63	(0.57,1]	chr8	353065	150	INTRON	INTRON	VPS13B	ENSG00000132549.20	ENST00000496144.5:ENST00000683334.1:ENST00000682853.1:ENST00000357162.7:ENST00000358544.7:ENST00000683619.1:ENST00000441350.2:ENST00000684269.1:ENST00000682806.1:ENST00000683869.1:ENST00000682153.1:ENST00000682358.1:ENST00000682145.1:ENST00000355155.6:ENST00000682234.1:ENST00000683486.1:ENST00000684308.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	21	2	2.66438	2.666195	2.66801	0.0171563	0.0169968	0.110899	0.104099
chr17	81857913	81858010	6850093	0	-	0.42268	(0.408,0.44]	chr17	678356	24	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	P4HB	ENSG00000185624.16	ENST00000680083.1:ENST00000680416.1:ENST00000575069.6:ENST00000681030.1:ENST00000680884.1:ENST00000681161.1:ENST00000681515.1:ENST00000679470.1:ENST00000571617.2:ENST00000679688.1:ENST00000680226.1:ENST00000680400.1:ENST00000574914.2:ENST00000331483.9:ENST00000680914.1:ENST00000680593.1:ENST00000681420.1:ENST00000681693.1:ENST00000576390.6:ENST00000681566.1:ENST00000680076.1:ENST00000680105.1:ENST00000681872.1:ENST00000466567.3:ENST00000679396.1:ENST00000415593.6:ENST00000679889.1:ENST00000680719.1:ENST00000680191.1:ENST00000680799.1:ENST00000680208.1:ENST00000679439.1:ENST00000439918.7:ENST00000472244.6:ENST00000681031.1:ENST00000680846.1:ENST00000681068.1:ENST00000679366.1:ENST00000681020.1:ENST00000681485.1:ENST00000679628.1:ENST00000679455.1:ENST00000680259.1:ENST00000680559.1:ENST00000680909.1:ENST00000681760.1:ENST00000681933.1:ENST00000570907.6:ENST00000680732.1:ENST00000680838.1:ENST00000680847.1:ENST00000574007.6:ENST00000573778.7:ENST00000576380.6:ENST00000576052.2:ENST00000471535.2:ENST00000576541.2:ENST00000467086.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	114	2	2.01032	2.666135	3.32195	0.00377558	2.54513e-4	0.0562562	0.0147895
chr9	41000075	41000174	4123583	0	+	0.424242	(0.408,0.44]	chr9	375956	50	INTRON	INTRON	FRG1HP	ENSG00000276291.6	ENST00000690347.1:ENST00000686028.1:ENST00000688017.1:ENST00000610803.5:ENST00000692434.1:ENST00000687775.1:ENST00000611606.5:ENST00000615326.5:ENST00000690313.1:ENST00000618340.5:ENST00000693485.1:ENST00000686736.1:ENST00000689683.1:ENST00000617940.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	3	51	2	2.55103	2.666125	2.78122	0.015812	0.00587353	0.101453	0.0690758
chrX	48915892	48915991	7815669	0	-	0.363636	(0.35,0.378]	chrX	796810	1	INTRON	INTRON	PIM2	ENSG00000102096.9	ENST00000376509.4	protein_coding	protein_coding	protein_coding	protein_coding	17	227	2	1.59525	2.6661200000000003	3.73699	0.00601777	6.66582e-6	0.0700813	0.00194394
chr18	36143366	36143466	6891565	0	+	0.5	(0.476,0.515]	chr18	683006	4	SS5_PROX	SS5_PROX:INTRON	ELP2	ENSG00000134759.14	ENST00000351393.10:ENST00000442325.6:ENST00000358232.11:ENST00000423854.6:ENST00000539560.5:ENST00000350494.10:ENST00000542824.5:ENST00000540799.1:ENST00000536373.5:ENST00000535093.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	83	2	1.97402	2.666045	3.35807	0.0206778	1.37324e-4	0.110999	0.0100829
chr6	16147649	16147749	2825965	0	+	0.43	(0.408,0.44]	chr6	265339	10	UTR3	UTR3:EXON_MRNA	MYLIP	ENSG00000007944.15	ENST00000356840.8:ENST00000349606.4	protein_coding	protein_coding	protein_coding	protein_coding	10	160	2	2.59693	2.66601	2.73509	4.69136e-4	1.36315e-4	0.0200472	0.010058
chr12	123299658	123299756	5444525	0	-	0.418367	(0.408,0.44]	chr12	520963	11	INTRON	INTRON	SBNO1	ENSG00000139697.14	ENST00000602398.3:ENST00000267176.8:ENST00000420886.6	protein_coding	protein_coding	protein_coding	protein_coding	4	61	2	2.17784	2.66599	3.15414	0.00916282	0.00469847	0.0855292	0.0600108
chr7	127922971	127923071	3405127	0	+	0.44	(0.408,0.44]	chr7	318161	178	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000465900.5:ENST00000486037.1:ENST00000484767.5:ENST00000492840.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	139	2	2.63349	2.665975	2.69846	0.00127877	1.34004e-4	0.0326395	0.00998237
chr15	63672195	63672295	6199239	0	-	0.41	(0.408,0.44]	chr15	591223	3	SS5_PROX	SS5_PROX:INTRON	HERC1	ENSG00000103657.14	ENST00000443617.7	protein_coding	protein_coding	protein_coding	protein_coding	2	38	2	2.43988	2.665905	2.89193	0.0398236	0.00950364	0.143072	0.0863579
chr18	2720923	2721023	6865540	0	+	0.44	(0.408,0.44]	chr18	680043	21	INTRON	INTRON	SMCHD1	ENSG00000101596.17	ENST00000320876.11:ENST00000688342.1:ENST00000693213.1:ENST00000577880.5:ENST00000584897.5:ENST00000581711.1:ENST00000583441.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	38	2	2.43988	2.665905	2.89193	0.0398236	0.00950364	0.143072	0.0863579
chr3	19970147	19970247	1376266	0	+	0.43	(0.408,0.44]	chr3	145052	2	SS3_PROX	SS3_PROX:INTRON	RAB5A	ENSG00000144566.11	ENST00000273047.9:ENST00000412966.5:ENST00000446547.5:ENST00000422242.1:ENST00000469122.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	38	2	2.43988	2.665905	2.89193	0.0398236	0.00950364	0.143072	0.0863579
chr5	19097075	19097175	2570036	0	-	0.44	(0.408,0.44]	chr5	246210	584	INTRON	INTRON	ENSG00000249174	ENSG00000249174.1	ENST00000504827.1	lncRNA	lncRNA	lncRNA	lncRNA	2	38	2	2.43988	2.665905	2.89193	0.0398236	0.00950364	0.143072	0.0863579
chr6	4909738	4909838	2792198	0	+	0.43	(0.408,0.44]	chr6	263614	170	INTRON	INTRON	CDYL	ENSG00000153046.18	ENST00000328908.9:ENST00000440139.5:ENST00000397588.8:ENST00000472453.5:ENST00000449732.6:ENST00000343762.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	38	2	2.43988	2.665905	2.89193	0.0398236	0.00950364	0.143072	0.0863579
chr3	138830501	138830601	1831458	0	-	0.46	(0.44,0.476]	chr3	184062	336	INTRON	INTRON	PIK3CB	ENSG00000051382.9	ENST00000674063.1:ENST00000477593.5:ENST00000462898.5:ENST00000483968.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	174	2	2.52309	2.6658549999999996	2.80862	2.58607e-4	1.45625e-4	0.014326	0.0110276
chr5	54064353	54064452	2618449	0	-	0.424242	(0.408,0.44]	chr5	248837	162	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	51	2	2.27464	2.665845	3.05705	0.0158016	0.00658331	0.109464	0.0701901
chr9	94294683	94294780	4161779	0	+	0.43299	(0.408,0.44]	chr9	379457	13	UTR3	UTR3:EXON_MRNA:INTRON	ZNF169	ENSG00000175787.17	ENST00000395395.7:ENST00000340911.8:ENST00000480716.1	protein_coding	protein_coding	protein_coding	protein_coding	3	51	2	2.27464	2.665845	3.05705	0.0158016	0.00658331	0.109464	0.0701901
chr9	130761054	130761154	4214335	0	+	0.49	(0.476,0.515]	chr9	386427	462	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000393293.4	protein_coding	protein_coding	protein_coding	protein_coding	6	98	2	2.65911	2.665765	2.67242	0.00136918	0.00116074	0.0336718	0.0314098
chr10	818277	818374	4541428	0	-	0.340206	(0.32,0.35]	chr10	419215	5	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	LARP4B	ENSG00000107929.16	ENST00000614908.5:ENST00000688365.1:ENST00000316157.8:ENST00000690516.1:ENST00000689323.1:ENST00000688042.1:ENST00000609318.5:ENST00000690211.1:ENST00000448368.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	44	2	2.30673	2.665715	3.0247	0.0584434	0.00671684	0.167723	0.0738715
chr20	17961039	17961139	7320491	0	-	0.41	(0.408,0.44]	chr20	745330	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	SNX5	ENSG00000089006.17	ENST00000377768.7:ENST00000490175.5:ENST00000483485.5:ENST00000377759.9:ENST00000431277.5:ENST00000419004.2:ENST00000474883.5:ENST00000475716.5:ENST00000469704.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	38	2	2.58624	2.66571	2.74518	0.0273686	0.0152229	0.123904	0.108535
chr8	30809489	30809589	3933118	0	-	0.43	(0.408,0.44]	chr8	360327	1	SS5_PROX	SS5_PROX:INTRON	PPP2CB	ENSG00000104695.13	ENST00000221138.9:ENST00000518564.1:ENST00000518243.5:ENST00000520056.1:ENST00000520500.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	38	2	2.58624	2.66571	2.74518	0.0273686	0.0152229	0.123904	0.108535
chrX	13316461	13316561	7622218	0	+	0.35	(0.32,0.35]	chrX	780287	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	GS1-600G8.3	ENSG00000231216.1	ENST00000431486.1	lncRNA	lncRNA	lncRNA	lncRNA	3	61	2	2.42352	2.6656899999999997	2.90786	0.0122807	0.00993008	0.091087	0.0877296
chr20	17946403	17946500	7320328	0	-	0.443299	(0.44,0.476]	chr20	745270	10	INTRON	INTRON	SNX5	ENSG00000089006.17	ENST00000377768.7:ENST00000490175.5:ENST00000483485.5:ENST00000377759.9:ENST00000491090.5:ENST00000476648.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	82	2	2.38763	2.66568	2.94373	0.00394089	0.00143431	0.0573041	0.0340925
chr16	85800583	85800683	6416648	0	+	0.47	(0.44,0.476]	chr16	615579	3	INTRON	INTRON	COX4I1	ENSG00000131143.10	ENST00000565078.5:ENST00000570123.5:ENST00000568339.5:ENST00000566115.5:ENST00000567241.5:ENST00000568794.5:ENST00000562336.5:ENST00000253452.8:ENST00000563774.1:ENST00000561569.5:ENST00000567266.5:ENST00000566405.5:ENST00000564544.1:ENST00000566617.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	132	2	2.47437	2.66566	2.85695	0.00117531	2.31706e-4	0.0316592	0.0139633
chr15	92883584	92883676	6103511	0	+	0.434783	(0.408,0.44]	chr15	581354	1	EXON_LNCRNA	EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CHASERR:ENSG00000279765	ENSG00000272888.8:ENSG00000279765.3	ENST00000653163.1:ENST00000557682.6:ENST00000553829.1:ENST00000556895.5:ENST00000554669.6:ENST00000554894.5:ENST00000557147.1:ENST00000629685.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	19	268	2	2.42123	2.66549	2.90975	8.63194e-5	4.20133e-5	0.00834955	0.00525498
chr12	104633382	104633482	5212452	0	+	0.43	(0.408,0.44]	chr12	493329	310	INTRON	INTRON	CHST11	ENSG00000171310.11	ENST00000303694.6:ENST00000549260.5:ENST00000549016.1	protein_coding	protein_coding	protein_coding	protein_coding	5	70	2	1.84301	2.66547	3.48793	0.0174311	0.00130904	0.112689	0.0331539
chr10	3088937	3089036	4381743	0	+	0.525253	(0.515,0.57]	chr10	404062	46	INTRON	INTRON	PFKP	ENSG00000067057.18	ENST00000607886.5:ENST00000381125.9:ENST00000381075.7:ENST00000678206.1:ENST00000678089.1:ENST00000676796.1:ENST00000421751.1:ENST00000407806.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	44	2	2.27238	2.665385	3.05839	0.0161808	0.00485936	0.101453	0.0640618
chr15	64552644	64552744	6045010	0	+	0.52	(0.515,0.57]	chr15	575696	497	INTRON	INTRON	ZNF609	ENSG00000180357.10	ENST00000326648.5:ENST00000558680.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	44	2	2.27238	2.665385	3.05839	0.0161808	0.00485936	0.101453	0.0640618
chr19	49916909	49917008	7201916	0	-	0.535354	(0.515,0.57]	chr19	730661	34	INTRON	INTRON	NUP62	ENSG00000213024.12	ENST00000422090.2:ENST00000352066.8:ENST00000597723.5:ENST00000597029.5:ENST00000596217.1:ENST00000595463.5:ENST00000593652.5:ENST00000595761.1:ENST00000599567.5:ENST00000596437.5:ENST00000600583.5:ENST00000594673.5:ENST00000599788.1:ENST00000600935.1:ENST00000596680.5:ENST00000601665.5:ENST00000599560.5:ENST00000595373.5:ENST00000599186.5:ENST00000597814.1:ENST00000599830.1:ENST00000598301.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	44	2	2.27238	2.665385	3.05839	0.0161808	0.00485936	0.101453	0.0640618
chr17	38768290	38768390	6764474	0	-	0.58	(0.57,1]	chr17	665254	27	UTR3	UTR3:EXON_MRNA	PIP4K2B	ENSG00000276293.5	ENST00000619039.5	protein_coding	protein_coding	protein_coding	protein_coding	4	33	2	2.01216	2.665375	3.31859	0.0163389	0.00137292	0.101571	0.0340241
chr9	83664832	83664929	4272642	0	-	0.608247	(0.57,1]	chr9	392940	4	SS5_PROX	SS5_PROX:INTRON	UBQLN1	ENSG00000135018.14	ENST00000376395.9:ENST00000533705.5:ENST00000257468.11:ENST00000526134.1:ENST00000527373.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	67	2	2.39556	2.66535	2.93514	0.00141347	5.35006e-5	0.0340865	0.00598316
chr6	143961709	143961808	3242768	0	-	0.323232	(0.32,0.35]	chr6	301223	4	INTRON	INTRON	PLAGL1	ENSG00000118495.21	ENST00000649307.1:ENST00000674357.1:ENST00000360537.6:ENST00000437412.5:ENST00000444202.5:ENST00000416623.5:ENST00000354765.6:ENST00000649211.1:ENST00000367572.3:ENST00000625622.2:ENST00000650125.1:ENST00000647880.1:ENST00000417959.4:ENST00000647988.1:ENST00000628651.2:ENST00000626294.2:ENST00000626462.2:ENST00000627449.2:ENST00000626373.2:ENST00000629195.2:ENST00000626022.2:ENST00000628069.2:ENST00000628630.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	44	2	2.64129	2.6652500000000003	2.68921	0.0230336	0.0222819	0.124303	0.118056
chr1	89902523	89902623	160341	0	+	0.46	(0.44,0.476]	chr1	17285	555	INTRON	INTRON	LRRC8D	ENSG00000171492.14	ENST00000525774.5:ENST00000337338.9:ENST00000394593.7:ENST00000532201.5:ENST00000414841.1:ENST00000527156.1:ENST00000441269.2	protein_coding	protein_coding	protein_coding	protein_coding	6	94	2	1.90375	2.665215	3.42668	0.0156406	9.22416e-5	0.101393	0.00802983
chr12	124779285	124779385	5445719	0	-	0.49	(0.476,0.515]	chr12	521214	3	INTRON	INTRON	SCARB1	ENSG00000073060.17	ENST00000339570.9:ENST00000261693.11:ENST00000679605.1:ENST00000681686.1:ENST00000680926.1:ENST00000680556.1:ENST00000680982.1:ENST00000680596.1:ENST00000681555.1:ENST00000681788.1:ENST00000415380.6:ENST00000681117.1:ENST00000681499.1:ENST00000545305.1:ENST00000538291.5:ENST00000546215.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	18	183	2	1.58978	2.665215	3.74065	0.00474291	2.47362e-5	0.0635019	0.00409416
chr1	17411523	17411621	384695	0	-	0.459184	(0.44,0.476]	chr1	45443	11	INTRON	INTRON	RCC2	ENSG00000179051.14	ENST00000375436.9:ENST00000375433.3	protein_coding	protein_coding	protein_coding	protein_coding	8	113	2	2.00861	2.66521	3.32181	0.00380912	2.46145e-4	0.0562562	0.0144887
chr6	154743017	154743117	3001913	0	+	0.46	(0.44,0.476]	chr6	280737	6	INTRON	INTRON	SCAF8	ENSG00000213079.10	ENST00000367186.7:ENST00000417268.3:ENST00000461219.5:ENST00000367178.8:ENST00000464628.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	72	2	2.35576	2.6651350000000003	2.97451	0.00853825	0.00208591	0.0780043	0.0424672
chr3	50111369	50111468	1424729	0	+	0.434343	(0.408,0.44]	chr3	150190	2	INTRON	INTRON	RBM5	ENSG00000003756.17	ENST00000347869.8:ENST00000464087.6:ENST00000441812.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	83	2	2.3494	2.665095	2.98079	0.00462504	0.00124935	0.062717	0.0323434
chr2	131213058	131213157	865489	0	+	0.50505	(0.476,0.515]	chr2	97182	15	INTRON	INTRON	PLEKHB2:POTEE	ENSG00000115762.17:ENSG00000188219.16	ENST00000404460.5:ENST00000683005.1	protein_coding	protein_coding	protein_coding	protein_coding	6	93	2	2.09066	2.66506	3.23946	0.00772252	2.59571e-4	0.0756858	0.014326
chrX	44899385	44899485	7648864	0	+	0.47	(0.44,0.476]	chrX	782726	250	INTRON	INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000675440.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000621147.5:ENST00000475233.1:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	63	2	1.49942	2.66506	3.8307	0.0792118	1.81621e-4	0.199574	0.0117212
chr16	85584235	85584335	6415674	0	+	0.61	(0.57,1]	chr16	615470	275	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	7	60	2	2.58898	2.6650549999999997	2.74113	0.00134929	1.93623e-4	0.0338207	0.0127226
chr13	30461871	30461954	5569896	0	-	0.325301	(0.32,0.35]	chr13	532371	2	SS3_PROX	SS3_PROX:INTRON	HMGB1	ENSG00000189403.15	ENST00000341423.10:ENST00000405805.5:ENST00000339872.8:ENST00000399489.5:ENST00000399494.5:ENST00000326004.4	protein_coding	protein_coding	protein_coding	protein_coding	8	135	2	1.96679	2.66498	3.36317	0.00700351	1.69213e-4	0.0718189	0.0112853
chr5	104141497	104141597	2441830	0	+	0.38	(0.378,0.408]	chr5	234410	362	INTRON	INTRON	LINC02163	ENSG00000251026.2	ENST00000662211.1:ENST00000666145.1	lncRNA	lncRNA	lncRNA	lncRNA	8	130	2	2.11608	2.6649700000000003	3.21386	0.00467795	5.98458e-5	0.0600108	0.00636653
chr13	48303743	48303827	5483999	0	+	0.595238	(0.57,1]	chr13	525435	1	UTR5	UTR5:EXON_MRNA	RB1	ENSG00000139687.16	ENST00000646097.1:ENST00000650461.1:ENST00000267163.6:ENST00000525036.1:ENST00000467505.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	43	2	2.46083	2.6648750000000003	2.86892	0.00255312	0.00125753	0.0466386	0.0323608
chr7	23517724	23517823	3503810	0	-	0.494949	(0.476,0.515]	chr7	326959	8	INTRON	INTRON	TRA2A	ENSG00000164548.12	ENST00000297071.9:ENST00000392502.8:ENST00000538367.6:ENST00000621813.4:ENST00000494255.5:ENST00000474586.5:ENST00000490942.1:ENST00000448549.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	39	2	2.13854	2.664865	3.19119	0.0776563	0.00325748	0.196285	0.0524329
chr15	64471825	64471924	6044200	0	+	0.444444	(0.44,0.476]	chr15	575688	106	INTRON	INTRON	ZNF609	ENSG00000180357.10	ENST00000326648.5:ENST00000416172.1	protein_coding	protein_coding	protein_coding	protein_coding	5	82	2	2.38636	2.664785	2.94321	0.0047296	0.00111162	0.0600445	0.0305384
chr12	49722229	49722329	5134727	0	+	0.41	(0.408,0.44]	chr12	484094	63	INTRON	INTRON	TMBIM6	ENSG00000139644.13	ENST00000548809.5:ENST00000551154.5	protein_coding	protein_coding	protein_coding	protein_coding	4	62	2	1.69172	2.6647849999999997	3.63785	0.0486032	4.70012e-4	0.153946	0.0196294
chr3	172044217	172044317	1559589	0	+	0.28	[0,0.28]	chr3	161523	32	INTRON	INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000421757.5:ENST00000469491.5:ENST00000336824.8:ENST00000423424.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	99	2	2.36941	2.66478	2.96015	0.0178556	0.00161799	0.106151	0.0369252
chr2	169572345	169572420	1261688	0	-	0.24	[0,0.28]	chr2	133685	2	SS3_PROX	SS3_PROX:INTRON	FASTKD1	ENSG00000138399.18	ENST00000453153.7:ENST00000453929.6:ENST00000445210.1:ENST00000438035.5	protein_coding	protein_coding	protein_coding	protein_coding	6	144	2	2.5043	2.664725	2.82515	0.00511937	8.72498e-4	0.0628102	0.0268436
chr7	132960924	132961024	3644672	0	-	0.47	(0.44,0.476]	chr7	338848	736	INTRON	INTRON	CHCHD3	ENSG00000106554.13	ENST00000262570.10:ENST00000448878.6:ENST00000496427.5:ENST00000423635.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	12	189	2	2.62933	2.6646349999999996	2.69994	2.24471e-4	8.93775e-5	0.01376	0.0079464
chr2	203262955	203263053	989129	0	+	0.489796	(0.476,0.515]	chr2	106217	32	INTRON	INTRON	CYP20A1	ENSG00000119004.17	ENST00000449301.5:ENST00000429815.6:ENST00000461371.5:ENST00000463131.5:ENST00000356079.9:ENST00000489360.5:ENST00000428265.5:ENST00000431118.5:ENST00000443941.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	51	2	2.31726	2.664615	3.01197	0.015077	0.00633162	0.0994339	0.0722266
chr17	62050343	62050443	6810731	0	-	0.4	(0.378,0.408]	chr17	672946	144	INTRON	INTRON	MED13	ENSG00000108510.10	ENST00000397786.7	protein_coding	protein_coding	protein_coding	protein_coding	16	252	2	2.60124	2.664565	2.72789	1.51521e-4	3.41386e-5	0.0112706	0.00466448
chr21	39247001	39247100	7464857	0	-	0.555556	(0.515,0.57]	chr21	760470	81	INTRON	INTRON	BRWD1	ENSG00000185658.14	ENST00000333229.6:ENST00000342449.8:ENST00000446924.5:ENST00000380800.7:ENST00000430093.5:ENST00000445245.5:ENST00000445668.5:ENST00000412604.1:ENST00000455867.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	85	2	2.28534	2.6645450000000004	3.04375	0.0061678	1.26526e-4	0.067653	0.00962985
chr1	204405994	204406091	621982	0	-	0.412371	(0.408,0.44]	chr1	73936	28	UTR3	UTR3:EXON_MRNA:INTRON	PPP1R15B	ENSG00000158615.10	ENST00000693720.1:ENST00000367188.5:ENST00000689921.1:ENST00000690849.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	61	2	2.22268	2.664545	3.10641	0.00770925	0.00555646	0.0784002	0.0648867
chr10	63243665	63243765	4633164	0	-	0.36	(0.35,0.378]	chr10	426215	233	INTRON	INTRON	JMJD1C	ENSG00000171988.20	ENST00000399262.7:ENST00000402544.5:ENST00000542921.5:ENST00000469152.5:ENST00000489372.4:ENST00000633035.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	41	2	2.39939	2.6644550000000002	2.92952	0.0458078	0.00881187	0.149888	0.084878
chr3	37001944	37002041	1395231	0	+	0.371134	(0.35,0.378]	chr3	146186	5	INTRON	INTRON	MLH1	ENSG00000076242.16	ENST00000536378.5:ENST00000673899.1:ENST00000674111.1:ENST00000673972.1:ENST00000457004.5:ENST00000673713.1:ENST00000231790.8:ENST00000673715.1:ENST00000432299.6:ENST00000673897.1:ENST00000442249.6:ENST00000454028.5:ENST00000673947.1:ENST00000456676.6:ENST00000673673.1:ENST00000674019.1:ENST00000458205.6:ENST00000413212.2:ENST00000447829.6:ENST00000673990.1:ENST00000455445.6:ENST00000435176.5:ENST00000539477.6:ENST00000441265.6:ENST00000492474.5:ENST00000429117.5:ENST00000674107.1:ENST00000466900.5:ENST00000485889.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	41	2	2.39939	2.6644550000000002	2.92952	0.0458078	0.00881187	0.149888	0.084878
chr11	47471529	47471629	4949555	0	-	0.38	(0.378,0.408]	chr11	464136	57	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	CELF1	ENSG00000149187.19	ENST00000310513.10:ENST00000687097.1:ENST00000395290.6:ENST00000358597.7:ENST00000395292.6:ENST00000361904.7:ENST00000539455.5:ENST00000531165.5:ENST00000532048.5:ENST00000524648.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	14	128	2	1.02375	2.664455	4.30516	0.0638113	2.97737e-5	0.199079	0.00452621
chr22	21837633	21837733	7561086	0	-	0.45	(0.44,0.476]	chr22	773388	294	INTRON	INTRON	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	4	62	2	1.61163	2.66445	3.71727	0.0598319	3.2089e-4	0.169278	0.0159645
chr13	95215168	95215268	5639009	0	-	0.5	(0.476,0.515]	chr13	537151	40	INTRON	INTRON	ABCC4	ENSG00000125257.16	ENST00000645237.2:ENST00000643051.1:ENST00000643842.1:ENST00000646439.1:ENST00000643816.1:ENST00000536256.3:ENST00000643556.1:ENST00000629385.1:ENST00000642524.1:ENST00000645532.1:ENST00000644471.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	52	2	2.56033	2.66444	2.76855	0.0287634	0.00244302	0.127066	0.0456956
chr1	40375905	40376005	81465	0	+	0.33	(0.32,0.35]	chr1	10553	8	INTRON	INTRON	SMAP2	ENSG00000084070.12	ENST00000435168.6:ENST00000372718.8:ENST00000372708.5	protein_coding	protein_coding	protein_coding	protein_coding	10	187	2	2.34177	2.66434	2.98691	0.00213698	4.13214e-5	0.0417866	0.00519938
chr3	158252165	158252265	1539704	0	+	0.54	(0.515,0.57]	chr3	160296	205	INTRON	INTRON	RSRC1	ENSG00000174891.14	ENST00000480820.5:ENST00000295930.7:ENST00000471994.5:ENST00000683733.1:ENST00000682221.1:ENST00000683831.1:ENST00000683516.1:ENST00000482822.3:ENST00000476899.6:ENST00000464171.5:ENST00000611884.5:ENST00000682164.1:ENST00000684604.1:ENST00000683899.1:ENST00000682500.1:ENST00000684683.1:ENST00000312179.10:ENST00000475278.6:ENST00000480119.5:ENST00000471911.5:ENST00000683137.1:ENST00000477788.5:ENST00000496268.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	61	2	1.62814	2.66422	3.7003	0.035203	3.73715e-4	0.150193	0.0179087
chr1	42663317	42663417	83798	0	+	0.36	(0.35,0.378]	chr1	10978	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	PPIH	ENSG00000171960.12	ENST00000372550.6:ENST00000678038.1:ENST00000677900.1:ENST00000676675.1:ENST00000304979.8:ENST00000678193.1:ENST00000678803.1:ENST00000678333.1:ENST00000677926.1:ENST00000677307.1:ENST00000440068.6:ENST00000677356.1:ENST00000679245.1:ENST00000678308.1:ENST00000678076.1:ENST00000677312.1:ENST00000677219.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	41	2	2.60341	2.664195	2.72498	0.0275785	0.0168499	0.123904	0.11068
chr15	41296803	41296900	6004516	0	+	0.443299	(0.44,0.476]	chr15	571269	1	EXON_LNCRNA	EXON_LNCRNA:INTRON	OIP5-AS1	ENSG00000247556.6	ENST00000558945.5:ENST00000500949.6:ENST00000561275.5:ENST00000560706.5:ENST00000501665.2	lncRNA	lncRNA	lncRNA	lncRNA	9	126	2	2.38458	2.664155	2.94373	0.00143431	3.61647e-4	0.0340925	0.0169808
chr1	35188502	35188590	420556	0	-	0.454545	(0.44,0.476]	chr1	50670	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SFPQ	ENSG00000116560.12	ENST00000470472.5:ENST00000696553.1:ENST00000357214.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	21	351	2	2.1722	2.664105	3.15601	3.80154e-4	1.73121e-6	0.0176313	8.78167e-4
chr7	133651834	133651934	3422169	0	+	0.5	(0.476,0.515]	chr7	319395	213	INTRON	INTRON	EXOC4	ENSG00000131558.15	ENST00000253861.5:ENST00000479839.6:ENST00000483800.5:ENST00000469115.5:ENST00000489931.5:ENST00000482089.5:ENST00000460346.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	39	2	2.38442	2.66396	2.9435	0.0417472	0.00929849	0.161736	0.0817766
chr4	467882	467982	2092858	0	-	0.54	(0.515,0.57]	chr4	206783	231	INTRON	INTRON	ABCA11P:ZNF721	ENSG00000251595.7:ENSG00000182903.16	ENST00000451020.6:ENST00000514396.5:ENST00000507854.1:ENST00000515578.5:ENST00000506646.5:ENST00000507078.1:ENST00000511833.3:ENST00000338977.5:ENST00000505900.1	protein_coding	protein_coding	protein_coding:transcribed_processed_pseudogene	protein_coding:nonsense_mediated_decay:processed_transcript	2	33	2	2.34087	2.66382	2.98677	0.0469761	0.00632549	0.151917	0.0722266
chr5	160098858	160098958	2759594	0	-	0.56	(0.515,0.57]	chr5	260436	44	INTRON	INTRON	PWWP2A	ENSG00000170234.13	ENST00000456329.7:ENST00000523662.1:ENST00000307063.9:ENST00000520662.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	33	2	2.34087	2.66382	2.98677	0.0469761	0.00632549	0.151917	0.0722266
chr9	111378079	111378179	4314189	0	-	0.42	(0.408,0.44]	chr9	396647	1	SS5_PROX	SS5_PROX:INTRON	ECPAS	ENSG00000136813.15	ENST00000684092.1:ENST00000338205.9:ENST00000259335.8	protein_coding	protein_coding	protein_coding	protein_coding	5	82	2	2.5027	2.663655	2.82461	0.00241819	0.00238178	0.0449397	0.0442901
chr2	65097670	65097770	1142637	0	-	0.34	(0.32,0.35]	chr2	122175	3	SS5_PROX	SS5_PROX:INTRON	RAB1A	ENSG00000138069.18	ENST00000649427.1:ENST00000494188.1:ENST00000409784.8:ENST00000409892.5:ENST00000409751.1:ENST00000398529.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	157	2	2.05211	2.6635999999999997	3.27509	0.0106769	1.65996e-5	0.0861859	0.00307833
chr4	1946843	1946942	1911344	0	+	0.40404	(0.378,0.408]	chr4	191792	46	UTR3	UTR3:EXON_MRNA:INTRON	NSD2	ENSG00000109685.19	ENST00000508803.6:ENST00000398261.6:ENST00000382891.9:ENST00000353275.9:ENST00000382892.6:ENST00000382895.7:ENST00000312087.10:ENST00000503128.5:ENST00000677559.1:ENST00000678714.1:ENST00000511904.1:ENST00000513726.5:ENST00000482415.6:ENST00000514329.5:ENST00000502425.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	13	158	2	1.80461	2.66352	3.52243	0.00300457	1.00701e-4	0.0505976	0.00905982
chr7	23420418	23420518	3503165	0	-	0.4	(0.378,0.408]	chr7	326906	12	INTRON	INTRON	IGF2BP3	ENSG00000136231.14	ENST00000258729.8:ENST00000421467.6:ENST00000468263.5:ENST00000479504.5:ENST00000466809.6:ENST00000491719.5:ENST00000465058.5:ENST00000469723.5:ENST00000476938.5:ENST00000468005.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	85	2	2.27309	2.66349	3.05389	0.00769587	6.75567e-4	0.0754631	0.0236067
chr12	91454643	91454743	5383762	0	-	0.41	(0.408,0.44]	chr12	513479	549	INTRON	INTRON	ENSG00000289605	ENSG00000289605.1	ENST00000685093.1	lncRNA	lncRNA	lncRNA	lncRNA	4	63	2	2.1226	2.6634849999999997	3.20437	0.012812	0.00306596	0.0926667	0.0509893
chr8	129527867	129527967	4060561	0	-	0.36	(0.35,0.378]	chr8	369648	173	INTRON	INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1:ENST00000676273.1:ENST00000667643.1:ENST00000668791.1:ENST00000663716.1:ENST00000663572.1:ENST00000676148.1:ENST00000667962.1:ENST00000674877.1:ENST00000675316.1:ENST00000674656.1:ENST00000446592.7:ENST00000667341.1:ENST00000675186.1:ENST00000652971.1:ENST00000661447.1:ENST00000674863.1:ENST00000675498.1:ENST00000675527.1:ENST00000676108.1:ENST00000657647.1:ENST00000675589.1:ENST00000675913.1:ENST00000675109.1:ENST00000671632.1:ENST00000671311.1:ENST00000676099.1:ENST00000660652.1:ENST00000675522.1:ENST00000675183.1:ENST00000658861.1:ENST00000663991.1:ENST00000675044.1:ENST00000675435.1:ENST00000674639.1:ENST00000676069.1:ENST00000675532.1:ENST00000674762.1:ENST00000523151.6:ENST00000675948.1:ENST00000665364.1:ENST00000657251.1:ENST00000675166.1:ENST00000674883.1:ENST00000675867.1:ENST00000674580.1:ENST00000675393.1:ENST00000520048.1:ENST00000674906.1:ENST00000676030.1:ENST00000670588.1:ENST00000675072.1:ENST00000664936.1:ENST00000652914.1:ENST00000657069.1	lncRNA	lncRNA	lncRNA	lncRNA	14	241	2	2.52075	2.663475	2.8062	2.50858e-4	5.48887e-5	0.0146486	0.00608161
chr16	88950015	88950114	6541027	0	-	0.575758	(0.57,1]	chr16	634104	83	INTRON	INTRON	CBFA2T3	ENSG00000129993.15	ENST00000268679.9:ENST00000563640.1:ENST00000570046.1	protein_coding	protein_coding	protein_coding	protein_coding	9	71	2	2.31565	2.66343	3.01121	5.89598e-4	1.18338e-4	0.0225024	0.00930884
chr5	36901479	36901578	2338677	0	+	0.373737	(0.35,0.378]	chr5	225949	151	INTRON	INTRON	NIPBL	ENSG00000164190.19	ENST00000282516.13:ENST00000448238.2:ENST00000652901.1	protein_coding	protein_coding	protein_coding	protein_coding	10	142	2	1.83583	2.6634200000000003	3.49101	0.00495196	1.34559e-4	0.0646039	0.0106016
chr12	111455412	111455509	5411757	0	-	0.515464	(0.515,0.57]	chr12	516798	4	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	ATXN2	ENSG00000204842.18	ENST00000642389.2:ENST00000608853.5:ENST00000672613.1:ENST00000673436.1:ENST00000643669.2:ENST00000389154.7:ENST00000616825.4:ENST00000389153.10:ENST00000550104.5:ENST00000483311.6:ENST00000672335.1:ENST00000647445.1:ENST00000482777.5:ENST00000492467.6:ENST00000673557.1:ENST00000673283.1:ENST00000673273.1:ENST00000673449.1:ENST00000535949.5:ENST00000542287.6:ENST00000475132.1:ENST00000550844.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	33	2	2.56306	2.6633	2.76354	0.0247751	0.0147344	0.131869	0.0983813
chr19	5028881	5028981	7004015	0	+	0.53	(0.515,0.57]	chr19	694806	122	INTRON	INTRON	KDM4B	ENSG00000127663.15	ENST00000159111.9:ENST00000611640.4:ENST00000588337.5:ENST00000381759.8:ENST00000536461.5	protein_coding	protein_coding	protein_coding	protein_coding	2	33	2	2.56306	2.6633	2.76354	0.0247751	0.0147344	0.131869	0.0983813
chr7	157342355	157342455	3455354	0	+	0.53	(0.515,0.57]	chr7	323052	19	INTRON	INTRON	DNAJB6	ENSG00000105993.15	ENST00000441561.5:ENST00000429029.6:ENST00000262177.9:ENST00000486083.6:ENST00000417758.5:ENST00000459889.5:ENST00000443280.5:ENST00000488001.5:ENST00000441291.5:ENST00000437030.5:ENST00000412557.5:ENST00000453383.5:ENST00000439402.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	33	2	2.56306	2.6633	2.76354	0.0247751	0.0147344	0.131869	0.0983813
chr8	104577626	104577726	4014608	0	-	0.55	(0.515,0.57]	chr8	367439	453	INTRON	INTRON	LRP12	ENSG00000147650.12	ENST00000424843.6:ENST00000276654.10:ENST00000520770.1:ENST00000519675.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	33	2	2.56306	2.6633	2.76354	0.0247751	0.0147344	0.131869	0.0983813
chr2	210008640	210008740	1000382	0	+	0.42	(0.408,0.44]	chr2	107376	48	INTRON	INTRON	RPE	ENSG00000197713.15	ENST00000354506.10:ENST00000436630.6:ENST00000408981.6:ENST00000429921.5:ENST00000454822.5:ENST00000453724.5:ENST00000359429.11:ENST00000438265.5:ENST00000429907.5:ENST00000438204.6:ENST00000452025.5:ENST00000445268.5:ENST00000441588.5:ENST00000438191.1:ENST00000411934.6:ENST00000435437.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	71	2	1.7743	2.663225	3.55215	0.0244755	7.01039e-4	0.12011	0.0241881
chr1	161600192	161600292	235516	0	+	0.36	(0.35,0.378]	chr1	28432	4	SS5_PROX	SS5_PROX:INTRON	FCGR2C	ENSG00000244682.8	ENST00000467903.5:ENST00000507374.5:ENST00000508651.1	polymorphic_pseudogene	processed_transcript	polymorphic_pseudogene	processed_transcript	18	290	2	2.05828	2.663205	3.26813	0.00121458	2.52771e-6	0.0319174	0.00101245
chr1	44755528	44755628	92474	0	+	0.55	(0.515,0.57]	chr1	12291	2	SS3_PROX	SS3_PROX:INTRON	KIF2C	ENSG00000142945.13	ENST00000452259.5:ENST00000493027.5:ENST00000372224.9:ENST00000455186.5:ENST00000372217.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	15	198	2	2.41043	2.6631799999999997	2.91593	2.29858e-4	8.53103e-6	0.0139147	0.00210871
chr11	47821223	47821299	4951889	0	-	0.368421	(0.35,0.378]	chr11	464601	1	SS5_PROX	SS5_PROX:INTRON	NUP160	ENSG00000030066.14	ENST00000694866.1:ENST00000378460.7:ENST00000530326.5:ENST00000528071.5:ENST00000528501.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	55	2	2.54421	2.6631650000000002	2.78212	0.0168532	0.00630238	0.103549	0.0722266
chr19	45407820	45407918	7190850	0	-	0.479592	(0.476,0.515]	chr19	728083	6	UTR3	UTR3:EXON_MRNA	ERCC1	ENSG00000012061.16	ENST00000423698.6:ENST00000300853.8	protein_coding	protein_coding	protein_coding	protein_coding	4	69	2	2.48551	2.663095	2.84068	0.00756632	0.00217133	0.0773151	0.0417893
chr11	62857052	62857152	4799337	0	+	0.6	(0.57,1]	chr11	444781	2	INTRON	INTRON	SLC3A2	ENSG00000168003.18	ENST00000680729.1:ENST00000680002.1:ENST00000681467.1:ENST00000377890.6:ENST00000538084.2:ENST00000681569.1:ENST00000680725.1:ENST00000377891.6:ENST00000377889.6:ENST00000681215.1:ENST00000535296.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	50	2	2.44356	2.663085	2.88261	0.00118949	0.00109465	0.031662	0.0304174
chr3	36986431	36986530	1655293	0	-	0.393939	(0.378,0.408]	chr3	169856	15	UTR3	UTR3:EXON_MRNA	EPM2AIP1	ENSG00000178567.8	ENST00000322716.8	protein_coding	protein_coding	protein_coding	protein_coding	3	53	2	2.65815	2.6630000000000003	2.66785	0.0224639	0.00391167	0.11692	0.0569957
chr5	65557908	65558007	2634242	0	-	0.393939	(0.378,0.408]	chr5	250195	26	INTRON	INTRON	CENPK	ENSG00000123219.13	ENST00000514814.5:ENST00000396679.6:ENST00000508421.5:ENST00000510693.5:ENST00000506282.6:ENST00000505960.5:ENST00000515497.5:ENST00000515873.5:ENST00000510768.5:ENST00000510354.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	53	2	2.21238	2.6629899999999997	3.1136	0.0218124	0.00443339	0.11491	0.061054
chr6	97143543	97143642	3163349	0	-	0.393939	(0.378,0.408]	chr6	295025	15	UTR3	UTR3:EXON_MRNA	MMS22L	ENSG00000146263.12	ENST00000683635.1:ENST00000275053.8	protein_coding	protein_coding	protein_coding	protein_coding	3	53	2	2.21238	2.6629899999999997	3.1136	0.0218124	0.00443339	0.11491	0.061054
chr1	205609128	205609227	623270	0	-	0.343434	(0.32,0.35]	chr1	74129	13	UTR3	UTR3:EXON_MRNA:INTRON	ELK4	ENSG00000158711.14	ENST00000616704.4:ENST00000357992.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	90	2	1.6868	2.662885	3.63897	0.0217601	9.34231e-4	0.123836	0.0280484
chr19	21453819	21453917	7158742	0	-	0.357143	(0.35,0.378]	chr19	723692	19	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ENSG00000268119	ENSG00000268119.7	ENST00000596705.5:ENST00000597444.6:ENST00000594557.1:ENST00000599993.7:ENST00000600469.7:ENST00000656526.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	4	74	2	2.52395	2.66287	2.80179	0.00824736	0.00223906	0.0773378	0.0435144
chr7	128537729	128537829	3407421	0	+	0.38	(0.378,0.408]	chr7	318333	36	INTRON	INTRON	ENSG00000280828	ENSG00000280828.1	ENST00000479267.2	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	6	80	2	1.88928	2.662865	3.43645	0.00958693	0.00171162	0.0866052	0.037419
chr3	172778687	172778786	1563508	0	+	0.525253	(0.515,0.57]	chr3	161783	43	INTRON	INTRON	ECT2	ENSG00000114346.14	ENST00000232458.9:ENST00000540509.5:ENST00000392692.8:ENST00000417960.5:ENST00000441497.6:ENST00000444250.1	protein_coding	protein_coding	protein_coding	protein_coding	6	67	2	1.56269	2.662815	3.76294	0.0319658	2.08636e-4	0.13174	0.0125926
chr5	139306838	139306938	2499512	0	+	0.32	(0.28,0.32]	chr5	238914	2	SS3_PROX	SS3_PROX:INTRON	MATR3	ENSG00000280987.4:ENSG00000015479.20	ENST00000509990.5:ENST00000506147.5:ENST00000512107.5:ENST00000361059.7:ENST00000394800.6:ENST00000502929.5:ENST00000504203.5:ENST00000514694.5:ENST00000509644.5:ENST00000505016.2:ENST00000502394.1:ENST00000512876.5:ENST00000513678.5:ENST00000513121.1:ENST00000504045.5:ENST00000504311.5:ENST00000502499.5:ENST00000510056.5:ENST00000511249.5:ENST00000394805.8:ENST00000507860.1:ENST00000509918.5:ENST00000503811.5:ENST00000511978.5:ENST00000618441.5:ENST00000508689.1:ENST00000514528.5:ENST00000504643.5:ENST00000514488.1:ENST00000503340.1:ENST00000504023.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	106	2	1.93544	2.662765	3.39009	0.0276828	1.74666e-4	0.123904	0.0114806
chr11	83160339	83160436	4840826	0	+	0.329897	(0.32,0.35]	chr11	451494	16	INTRON	INTRON	PCF11	ENSG00000165494.12	ENST00000298281.8:ENST00000530660.5:ENST00000690938.1:ENST00000530304.5:ENST00000533018.1	protein_coding	protein_coding	protein_coding	protein_coding	5	97	2	2.46576	2.66275	2.85974	0.00423072	0.00186579	0.0572185	0.0399675
chr17	61943792	61943891	6809628	0	-	0.353535	(0.35,0.378]	chr17	672797	13	UTR3	UTR3:EXON_MRNA	MED13	ENSG00000108510.10	ENST00000397786.7	protein_coding	protein_coding	protein_coding	protein_coding	2	42	2	2.1617	2.662705	3.16371	0.0771502	0.00383956	0.196285	0.0562562
chr1	65275810	65275910	135751	0	+	0.24	[0,0.28]	chr1	15346	105	INTRON	INTRON	DNAJC6	ENSG00000116675.16	ENST00000463018.5:ENST00000494710.6:ENST00000263441.11:ENST00000395325.7:ENST00000483402.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	124	2	2.59765	2.6626649999999996	2.72768	0.00405445	0.00365944	0.0578376	0.0535094
chr12	104290892	104290992	5210048	0	+	0.26	[0,0.28]	chr12	493205	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	TXNRD1	ENSG00000198431.17	ENST00000525566.6:ENST00000526266.5:ENST00000503506.6:ENST00000526691.5:ENST00000531691.5:ENST00000526390.5:ENST00000531689.5:ENST00000529546.5:ENST00000529751.1:ENST00000528079.6:ENST00000526580.5:ENST00000529784.5:ENST00000524698.5:ENST00000527688.5:ENST00000527335.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	137	2	2.24136	2.662655	3.08395	0.00497825	0.00163044	0.0646039	0.0368492
chr7	22857961	22858059	3288723	0	+	0.479592	(0.476,0.515]	chr7	305434	10	EXON_LNCRNA	EXON_LNCRNA:INTRON	SNHG26	ENSG00000228649.10	ENST00000415611.8:ENST00000667557.1:ENST00000422542.4:ENST00000656301.1:ENST00000661147.1:ENST00000656687.2:ENST00000662021.1:ENST00000691516.1:ENST00000685098.1:ENST00000689892.1:ENST00000663057.1:ENST00000657608.1:ENST00000688000.1:ENST00000690219.1:ENST00000658124.1:ENST00000661582.1	lncRNA	lncRNA	lncRNA	lncRNA	15	236	2	2.61688	2.662605	2.70833	9.10492e-5	5.82453e-5	0.00797978	0.00668534
chr3	41212063	41212163	1403150	0	+	0.4	(0.378,0.408]	chr3	147417	113	INTRON	INTRON	CTNNB1	ENSG00000168036.18	ENST00000643541.1:ENST00000426215.5:ENST00000645210.1:ENST00000646381.1:ENST00000405570.6:ENST00000642248.1:ENST00000433400.6:ENST00000642992.1:ENST00000431914.6:ENST00000642836.1:ENST00000396185.8:ENST00000642986.1:ENST00000644678.1:ENST00000643031.1:ENST00000396183.7:ENST00000645982.1:ENST00000453024.6:ENST00000645900.1:ENST00000647264.1:ENST00000646174.1:ENST00000643992.1:ENST00000642886.1:ENST00000647390.1:ENST00000643052.1:ENST00000488914.2:ENST00000349496.11:ENST00000642426.1:ENST00000646074.1:ENST00000645276.1:ENST00000644138.1:ENST00000646116.1:ENST00000644873.1:ENST00000643865.1:ENST00000644867.1:ENST00000646725.1:ENST00000645493.1:ENST00000646369.1:ENST00000643977.1:ENST00000647413.1:ENST00000644524.1:ENST00000645305.1:ENST00000643297.1:ENST00000450969.6:ENST00000642315.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	71	2	2.30628	2.66257	3.01886	0.0163339	7.99379e-4	0.101571	0.0258804
chr3	19962949	19963049	1376194	0	+	0.45	(0.44,0.476]	chr3	145051	97	INTRON	INTRON	RAB5A	ENSG00000144566.11	ENST00000273047.9:ENST00000412966.5:ENST00000446547.5:ENST00000422242.1:ENST00000469122.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	77	2	1.892	2.662525	3.43305	0.00935701	0.00159668	0.0858596	0.0364566
chr3	143017475	143017574	1529240	0	+	0.313131	(0.28,0.32]	chr3	159357	1	INTRON	INTRON	U2SURP	ENSG00000163714.18	ENST00000488497.7:ENST00000473835.7:ENST00000461591.5:ENST00000493598.6:ENST00000463563.6:ENST00000470400.5:ENST00000488587.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	120	2	1.86858	2.662515	3.45645	0.0214814	1.23958e-4	0.114341	0.00952291
chr1	65555163	65555263	138537	0	+	0.4	(0.378,0.408]	chr1	15499	290	INTRON	INTRON	LEPR	ENSG00000116678.20	ENST00000371060.7:ENST00000371059.7:ENST00000349533.11:ENST00000616738.4:ENST00000344610.12:ENST00000462765.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	53	2	2.17608	2.6624999999999996	3.14892	0.0218783	0.00499984	0.123836	0.0617433
chr12	79925701	79925801	5376441	0	-	0.39	(0.378,0.408]	chr12	512797	119	INTRON	INTRON	PPP1R12A	ENSG00000058272.19	ENST00000261207.9:ENST00000450142.7:ENST00000437004.6:ENST00000550107.5:ENST00000547330.5:ENST00000550510.5	protein_coding	protein_coding	protein_coding	protein_coding	3	53	2	2.17608	2.6624999999999996	3.14892	0.0218783	0.00499984	0.123836	0.0617433
chr5	181241418	181241436	2783895	0	-	0.333333	(0.32,0.35]	chr5	262932	1	SSB_ADJ	SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RACK1	ENSG00000204628.12	ENST00000512805.6:ENST00000511473.5:ENST00000504325.5:ENST00000507756.5:ENST00000502905.5:ENST00000511566.5:ENST00000376817.8:ENST00000508682.5:ENST00000504128.5:ENST00000504726.1:ENST00000511900.5:ENST00000513060.5:ENST00000512968.5:ENST00000510199.5:ENST00000502844.5:ENST00000507000.5:ENST00000514183.5:ENST00000502548.5:ENST00000502890.5:ENST00000503494.5:ENST00000506312.3:ENST00000503081.1:ENST00000515417.5:ENST00000513027.3:ENST00000626067.1:ENST00000505461.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	17	318	2	2.61606	2.66233	2.7086	1.13225e-4	7.17915e-5	0.00957524	0.00705222
chr10	28592821	28592920	4414408	0	+	0.30303	(0.28,0.32]	chr10	407165	11	INTRON	INTRON	WAC	ENSG00000095787.24	ENST00000680735.1:ENST00000375664.8:ENST00000428935.6:ENST00000628285.3:ENST00000681112.1:ENST00000679570.1:ENST00000375646.5:ENST00000354911.9:ENST00000347934.8:ENST00000420266.6:ENST00000679398.1:ENST00000424454.5:ENST00000442148.6:ENST00000414108.6:ENST00000679428.1:ENST00000439676.5:ENST00000345541.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	77	2	2.32052	2.662235	3.00395	0.0101329	0.00612675	0.0850389	0.0708525
chrX	114053727	114053827	7868579	0	-	0.44	(0.408,0.44]	chrX	801557	109	INTRON	INTRON	XACT	ENSG00000241743.4	ENST00000468762.3:ENST00000649506.1	lncRNA	lncRNA	lncRNA	lncRNA	4	70	2	2.49983	2.66222	2.82461	0.00713527	0.00241819	0.0756118	0.0442901
chr12	872441	872540	5057390	0	+	0.353535	(0.35,0.378]	chr12	477488	7	INTRON	INTRON	WNK1	ENSG00000060237.19	ENST00000315939.11:ENST00000340908.9:ENST00000535572.5:ENST00000537687.5:ENST00000530271.6:ENST00000675631.1:ENST00000676347.1:ENST00000545285.5:ENST00000535698.1:ENST00000674810.1:ENST00000574679.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	56	2	2.60341	2.6621699999999997	2.72093	0.0275785	0.00314173	0.123904	0.0514466
chr7	8326010	8326110	3280903	0	+	0.44	(0.408,0.44]	chr7	304832	215	INTRON	INTRON	ENSG00000229970:ENSG00000272328	ENSG00000229970.3:ENSG00000272328.1	ENST00000424460.1:ENST00000435967.1:ENST00000606016.1	lncRNA	lncRNA	lncRNA	lncRNA	3	52	2	2.07919	2.6621449999999998	3.2451	0.0291499	0.00337792	0.14147	0.0516884
chr5	141569537	141569636	2739665	0	-	0.454545	(0.44,0.476]	chr5	258073	90	INTRON	INTRON	DIAPH1	ENSG00000131504.18	ENST00000647433.1:ENST00000389054.8:ENST00000518047.5	protein_coding	protein_coding	protein_coding	protein_coding	3	53	2	1.93084	2.6620299999999997	3.39322	0.0443175	0.00187283	0.162302	0.0390476
chr6	7235561	7235661	2799654	0	+	0.46	(0.44,0.476]	chr6	263786	30	INTRON	INTRON	RREB1	ENSG00000124782.21	ENST00000379933.7:ENST00000379938.7:ENST00000349384.10:ENST00000334984.10	protein_coding	protein_coding	protein_coding	protein_coding	3	53	2	1.93084	2.6620299999999997	3.39322	0.0443175	0.00187283	0.162302	0.0390476
chr5	1571771	1571861	2565705	0	-	0.266667	[0,0.28]	chr5	245751	2	SS5_PROX	SS5_PROX:INTRON	SDHAP3	ENSG00000185986.13	ENST00000652578.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	3	73	2	2.02265	2.66174	3.30083	0.0449017	0.00319246	0.149888	0.0520345
chr7	127363266	127363366	3633946	0	-	0.35	(0.32,0.35]	chr7	337748	36	EXON_MRNA	EXON_MRNA:INTRON	ZNF800:ENSG00000280347	ENSG00000048405.11:ENSG00000280347.1	ENST00000485577.1:ENST00000624029.1	protein_coding	TEC	protein_coding:TEC	TEC:processed_transcript	5	81	2	2.12121	2.6616850000000003	3.20216	0.00650424	0.00480708	0.0735144	0.0602209
chr20	53591257	53591357	7358459	0	-	0.37	(0.35,0.378]	chr20	750309	77	INTRON	INTRON	ZNF217	ENSG00000171940.14	ENST00000371471.7:ENST00000431687.5:ENST00000540425.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	69	2	2.59827	2.66162	2.72497	0.0198266	0.0016492	0.109608	0.0375159
chr3	5125473	5125573	1353605	0	+	0.41	(0.408,0.44]	chr3	142354	25	INTRON	INTRON	ARL8B	ENSG00000134108.14	ENST00000429403.5:ENST00000256496.8:ENST00000455168.5:ENST00000444332.1:ENST00000419534.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	82	2	2.46587	2.66155	2.85723	0.00280622	0.00211413	0.0488779	0.0415897
chr2	181018922	181019022	936355	0	+	0.41	(0.408,0.44]	chr2	102627	290	INTRON	INTRON	UBE2E3	ENSG00000170035.16	ENST00000602303.5:ENST00000602959.5:ENST00000602479.5:ENST00000392415.6:ENST00000602291.5:ENST00000410062.9:ENST00000602499.5:ENST00000602710.5:ENST00000602762.5:ENST00000602888.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	70	2	1.79818	2.6614449999999996	3.52471	0.020428	0.00112428	0.122109	0.0306963
chr8	42286440	42286540	3743091	0	+	0.44	(0.408,0.44]	chr8	348064	139	INTRON	INTRON	IKBKB	ENSG00000104365.16	ENST00000520810.6:ENST00000629753.2:ENST00000517890.5:ENST00000520835.7:ENST00000523105.5:ENST00000519735.5:ENST00000519733.5:ENST00000518679.5:ENST00000517917.5:ENST00000342222.6:ENST00000520201.5:ENST00000518647.5:ENST00000517388.5:ENST00000521661.5:ENST00000520655.5:ENST00000517812.5:ENST00000522147.4:ENST00000523517.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	70	2	1.79818	2.6614449999999996	3.52471	0.020428	0.00112428	0.122109	0.0306963
chr6	147670092	147670191	2990696	0	+	0.373737	(0.35,0.378]	chr6	280159	89	INTRON	INTRON	ENSG00000227681	ENSG00000227681.5	ENST00000427015.1:ENST00000432506.5	lncRNA	lncRNA	lncRNA	lncRNA	4	74	2	2.56071	2.661315	2.76192	0.00725312	0.00265021	0.072984	0.0474328
chr1	1567904	1568004	360253	0	-	0.44	(0.408,0.44]	chr1	41853	26	INTRON	INTRON	SSU72	ENSG00000160075.12	ENST00000291386.4:ENST00000378725.3:ENST00000359060.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	113	2	2.50424	2.661265	2.81829	0.00101099	7.33803e-4	0.0293364	0.0249226
chr10	998402	998502	4379097	0	+	0.4	(0.378,0.408]	chr10	403833	7	INTRON	INTRON	GTPBP4	ENSG00000107937.19	ENST00000360803.9:ENST00000491635.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	97	2	2.52074	2.6611450000000003	2.80155	0.00278307	9.57797e-4	0.0469265	0.0284518
chr10	13634317	13634416	4396354	0	+	0.40404	(0.378,0.408]	chr10	405797	11	INTRON	INTRON	ENSG00000239665	ENSG00000239665.8	ENST00000601075.5:ENST00000597920.5:ENST00000615691.4:ENST00000440878.5:ENST00000617260.4:ENST00000614899.4:ENST00000601758.5:ENST00000599639.5:ENST00000596499.5:ENST00000613467.4	lncRNA	lncRNA	lncRNA	lncRNA	2	39	2	2.46373	2.661135	2.85854	0.0382831	0.0107837	0.141795	0.0920575
chr3	180914351	180914451	1568618	0	+	0.4	(0.378,0.408]	chr3	162354	3	SS3_PROX	SS3_PROX:INTRON	FXR1	ENSG00000114416.18	ENST00000469882.5:ENST00000484790.5:ENST00000465551.5:ENST00000305586.11:ENST00000475315.5:ENST00000491674.1:ENST00000357559.9:ENST00000468861.5:ENST00000491062.5:ENST00000479176.5:ENST00000445140.6:ENST00000472339.5:ENST00000484958.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	39	2	2.46373	2.661135	2.85854	0.0382831	0.0107837	0.141795	0.0920575
chr6	34688448	34688548	3086137	0	-	0.39	(0.378,0.408]	chr6	288696	166	INTRON	INTRON	ILRUN	ENSG00000196821.10	ENST00000374026.7:ENST00000374023.8	protein_coding	protein_coding	protein_coding	protein_coding	2	39	2	2.46373	2.661135	2.85854	0.0382831	0.0107837	0.141795	0.0920575
chrX	9658930	9659030	7620608	0	+	0.39	(0.378,0.408]	chrX	779994	21	INTRON	INTRON	TBL1X	ENSG00000101849.18	ENST00000407597.7:ENST00000380961.5:ENST00000424279.6:ENST00000645353.2:ENST00000422314.5:ENST00000645686.1:ENST00000646640.1:ENST00000647172.1:ENST00000452824.5:ENST00000683056.1:ENST00000647060.1	protein_coding	protein_coding	protein_coding	protein_coding	2	39	2	2.46373	2.661135	2.85854	0.0382831	0.0107837	0.141795	0.0920575
chr22	49606353	49606453	7602144	0	-	0.36	(0.35,0.378]	chr22	778570	107	INTRON	INTRON	MIR3667HG	ENSG00000188511.13	ENST00000414287.5:ENST00000416411.1:ENST00000689875.1	lncRNA	lncRNA	lncRNA	lncRNA	4	75	2	2.59046	2.6610500000000004	2.73164	0.00528327	0.00387645	0.0656295	0.0543578
chr4	78932675	78932775	2167731	0	-	0.27	[0,0.28]	chr4	213791	2	SS5_PROX	SS5_PROX:INTRON	PAQR3	ENSG00000163291.14	ENST00000342820.10:ENST00000512760.5:ENST00000511594.5:ENST00000512733.5:ENST00000395594.2:ENST00000515853.5:ENST00000512299.5:ENST00000508599.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	81	2	2.20927	2.661045	3.11282	0.0794763	8.44203e-4	0.19979	0.0263813
chr10	125108110	125108209	4713812	0	-	0.383838	(0.378,0.408]	chr10	434907	70	INTRON	INTRON	CTBP2	ENSG00000175029.17	ENST00000337195.9:ENST00000411419.6:ENST00000494626.6:ENST00000531469.5:ENST00000460976.5:ENST00000476817.1:ENST00000530884.1:ENST00000530930.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	39	2	2.53503	2.66104	2.78705	0.0319942	0.0135539	0.13174	0.101363
chr16	8082322	8082422	6441332	0	-	0.47	(0.44,0.476]	chr16	620351	747	INTRON	INTRON	ENSG00000260289	ENSG00000260289.2	ENST00000670665.1:ENST00000654046.1:ENST00000567103.2	lncRNA	lncRNA	lncRNA	lncRNA	2	38	2	2.29842	2.66104	3.02366	0.0552483	0.00603307	0.165463	0.0700813
chr6	104983852	104983952	2930119	0	+	0.39	(0.378,0.408]	chr6	276110	252	INTRON	INTRON	LIN28B	ENSG00000187772.8	ENST00000635857.1:ENST00000637759.1:ENST00000345080.5	protein_coding	protein_coding	protein_coding	protein_coding	2	39	2	2.53503	2.66104	2.78705	0.0319942	0.0135539	0.13174	0.101363
chr21	43885208	43885308	7413990	0	+	0.61	(0.57,1]	chr21	755692	22	INTRON	INTRON	AGPAT3	ENSG00000160216.21	ENST00000291572.13:ENST00000448287.5:ENST00000398061.5	protein_coding	protein_coding	protein_coding	protein_coding	4	36	2	2.58733	2.661035	2.73474	0.00454222	0.00241874	0.0595107	0.0454275
chr5	119316084	119316184	2462071	0	+	0.32	(0.28,0.32]	chr5	235844	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	TNFAIP8	ENSG00000145779.8	ENST00000274456.6:ENST00000388882.5	protein_coding	protein_coding	protein_coding	protein_coding	6	131	2	2.41625	2.661025	2.9058	0.00419958	8.06216e-4	0.0592209	0.0263344
chr7	131332889	131332989	3416492	0	+	0.47	(0.44,0.476]	chr7	319187	45	INTRON	INTRON	MKLN1	ENSG00000128585.18	ENST00000421797.6:ENST00000416992.6:ENST00000429546.5:ENST00000446815.5:ENST00000494286.5:ENST00000352689.11:ENST00000494785.5:ENST00000458153.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	70	2	1.60467	2.66097	3.71727	0.0411383	3.2089e-4	0.1451	0.0159645
chr3	41212163	41212263	1403151	0	+	0.43	(0.408,0.44]	chr3	147417	114	INTRON	INTRON	CTNNB1	ENSG00000168036.18	ENST00000643541.1:ENST00000426215.5:ENST00000645210.1:ENST00000646381.1:ENST00000405570.6:ENST00000642248.1:ENST00000433400.6:ENST00000642992.1:ENST00000431914.6:ENST00000642836.1:ENST00000396185.8:ENST00000642986.1:ENST00000644678.1:ENST00000643031.1:ENST00000396183.7:ENST00000645982.1:ENST00000453024.6:ENST00000645900.1:ENST00000647264.1:ENST00000646174.1:ENST00000643992.1:ENST00000642886.1:ENST00000647390.1:ENST00000643052.1:ENST00000488914.2:ENST00000349496.11:ENST00000642426.1:ENST00000646074.1:ENST00000645276.1:ENST00000644138.1:ENST00000646116.1:ENST00000644873.1:ENST00000643865.1:ENST00000644867.1:ENST00000646725.1:ENST00000645493.1:ENST00000646369.1:ENST00000643977.1:ENST00000647413.1:ENST00000644524.1:ENST00000645305.1:ENST00000643297.1:ENST00000450969.6:ENST00000642315.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	101	2	2.15938	2.66085	3.16232	0.011260300000000001	7.71549e-5	0.0884004	0.00735438
chrX	38805781	38805875	7643753	0	+	0.606383	(0.57,1]	chrX	782163	4	UTR3	UTR3:EXON_MRNA	MID1IP1	ENSG00000165175.17	ENST00000457894.5:ENST00000378474.3:ENST00000336949.7:ENST00000614558.3	protein_coding	protein_coding	protein_coding	protein_coding	8	59	2	2.11241	2.66079	3.20917	0.00190628	2.02775e-4	0.0403772	0.0129814
chr14	19334951	19335051	5832377	0	-	0.27	[0,0.28]	chr14	553818	2	SS5_PROX	SS5_PROX:INTRON	DUXAP10	ENSG00000244306.11	ENST00000648085.1:ENST00000614614.4:ENST00000612696.4:ENST00000619784.4:ENST00000616922.4:ENST00000624585.3:ENST00000549065.5:ENST00000610531.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	4	89	2	1.94614	2.66072	3.3753	0.0298508	0.00242466	0.129138	0.0454587
chr11	119071943	119072031	4874294	0	+	0.454545	(0.44,0.476]	chr11	455474	1	SS5_PROX	SS5_PROX:INTRON	VPS11	ENSG00000160695.16	ENST00000621676.5:ENST00000614944.4:ENST00000622309.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	38	2	2.58033	2.6604799999999997	2.74063	0.0247511	0.0176095	0.131869	0.105143
chr6	98934820	98934879	3165458	0	-	0.440678	(0.44,0.476]	chr6	295222	2	UTR5	UTR5:EXON_MRNA:INTRON	FBXL4	ENSG00000112234.9	ENST00000369244.7:ENST00000229971.2	protein_coding	protein_coding	protein_coding	protein_coding	2	38	2	2.58033	2.6604799999999997	2.74063	0.0247511	0.0176095	0.131869	0.105143
chr10	21672365	21672461	4405807	0	+	0.489583	(0.476,0.515]	chr10	406511	13	INTRON	INTRON	MLLT10	ENSG00000078403.17	ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000651298.1:ENST00000377059.7:ENST00000651382.1:ENST00000438473.6:ENST00000650921.1:ENST00000651405.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	50	2	2.37731	2.660405	2.9435	0.0111793	0.00929849	0.0937192	0.0817766
chr18	10537059	10537157	6873935	0	+	0.479592	(0.476,0.515]	chr18	680940	22	INTRON	INTRON	NAPG	ENSG00000134265.13	ENST00000580483.5:ENST00000322897.11:ENST00000580224.5:ENST00000582978.5:ENST00000582472.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	50	2	2.37731	2.660405	2.9435	0.0111793	0.00929849	0.0937192	0.0817766
chr2	74173052	74173152	1157072	0	-	0.48	(0.476,0.515]	chr2	123719	3	SS3_PROX	SS3_PROX:INTRON	MOB1A	ENSG00000114978.18	ENST00000396049.5:ENST00000497054.5:ENST00000495286.5:ENST00000463975.1:ENST00000488006.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	50	2	2.37731	2.660405	2.9435	0.0111793	0.00929849	0.0937192	0.0817766
chr1	179179668	179179768	592579	0	-	0.42	(0.408,0.44]	chr1	71074	367	INTRON	INTRON	ABL2	ENSG00000143322.21	ENST00000502732.6:ENST00000367623.8:ENST00000507173.5:ENST00000511413.5:ENST00000668691.1:ENST00000392043.4:ENST00000660584.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	38	2	2.36073	2.6604	2.96007	0.0481658	0.00753901	0.153019	0.0773151
chr3	12490966	12491062	1367344	0	+	0.4375	(0.408,0.44]	chr3	143982	6	INTRON	INTRON	TSEN2	ENSG00000154743.19	ENST00000681482.1:ENST00000446004.6:ENST00000679699.1:ENST00000681713.1:ENST00000680458.1:ENST00000680923.1:ENST00000679670.1:ENST00000680817.1:ENST00000412698.3:ENST00000455118.6:ENST00000680765.1:ENST00000415684.6:ENST00000681343.1:ENST00000679424.1:ENST00000680126.1:ENST00000679756.1:ENST00000475595.2:ENST00000681433.1:ENST00000680376.1:ENST00000680873.1:ENST00000681073.1:ENST00000679537.1:ENST00000454502.6:ENST00000284995.11:ENST00000402228.7:ENST00000680275.1:ENST00000679995.1:ENST00000681676.1:ENST00000473755.5:ENST00000679492.1:ENST00000681042.1:ENST00000680857.1:ENST00000679690.1:ENST00000679555.1:ENST00000681140.1:ENST00000679425.1:ENST00000680264.1:ENST00000680449.1:ENST00000681471.1:ENST00000680598.1:ENST00000679693.1:ENST00000679876.1:ENST00000444864.6:ENST00000679367.1:ENST00000681268.1:ENST00000680421.1:ENST00000680555.1:ENST00000679785.1:ENST00000679835.1:ENST00000680943.1:ENST00000681227.1:ENST00000680419.1:ENST00000680172.1:ENST00000490981.2:ENST00000680986.1:ENST00000680354.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	38	2	2.36073	2.6604	2.96007	0.0481658	0.00753901	0.153019	0.0773151
chr3	138776504	138776604	1830916	0	-	0.44	(0.408,0.44]	chr3	184056	60	INTRON	INTRON	PIK3CB	ENSG00000051382.9	ENST00000674063.1:ENST00000477593.5:ENST00000462898.5:ENST00000483968.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	38	2	2.36073	2.6604	2.96007	0.0481658	0.00753901	0.153019	0.0773151
chr7	130108868	130108967	3413979	0	+	0.434343	(0.408,0.44]	chr7	319110	115	INTRON	INTRON	KLHDC10	ENSG00000128607.14	ENST00000335420.10:ENST00000463413.1:ENST00000468226.1	protein_coding	protein_coding	protein_coding	protein_coding	2	38	2	2.36073	2.6604	2.96007	0.0481658	0.00753901	0.153019	0.0773151
chr22	20082258	20082356	7478249	0	+	0.602041	(0.57,1]	chr22	762700	12	INTRON	INTRON	DGCR8	ENSG00000128191.16	ENST00000383024.6:ENST00000351989.8:ENST00000457069.1	protein_coding	protein_coding	protein_coding	protein_coding	4	33	2	2.09207	2.6603149999999998	3.22856	0.0121228	0.00205928	0.090965	0.0420839
chr3	197615588	197615685	1903911	0	-	0.319588	(0.28,0.32]	chr3	190733	17	EXON_MRNA	EXON_MRNA:EXON_LNCRNA	SDHAP4	ENSG00000214135.9	ENST00000453454.5:ENST00000685600.1:ENST00000688268.1:ENST00000689716.1:ENST00000689038.1:ENST00000414207.5:ENST00000686003.1:ENST00000418868.6:ENST00000685331.1:ENST00000690701.1:ENST00000685536.1:ENST00000449003.6:ENST00000440535.5	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript	4	78	2	2.4468	2.66031	2.87382	0.014868	0.0037095	0.0989021	0.0561833
chr1	32049183	32049283	63007	0	+	0.52	(0.515,0.57]	chr1	7991	34	INTRON	INTRON	KHDRBS1	ENSG00000121774.18	ENST00000484270.2	protein_coding	processed_transcript	protein_coding	processed_transcript	11	149	2	2.65244	2.660275	2.66811	1.82258e-4	1.19096e-4	0.0117546	0.00988698
chr8	100710902	100710998	4005473	0	-	0.385417	(0.378,0.408]	chr8	366598	8	INTRON	INTRON	PABPC1	ENSG00000070756.17	ENST00000677140.1:ENST00000677787.1:ENST00000678709.1:ENST00000676662.1:ENST00000677765.1:ENST00000677892.1:ENST00000522720.2:ENST00000520804.2:ENST00000521865.6:ENST00000677478.1:ENST00000677380.1:ENST00000520142.2:ENST00000677775.1:ENST00000678954.1:ENST00000676655.1:ENST00000676976.1:ENST00000678290.1:ENST00000318607.10:ENST00000679197.1:ENST00000519100.6:ENST00000519004.5:ENST00000522387.5:ENST00000523636.5:ENST00000522658.6:ENST00000678822.1:ENST00000523555.6:ENST00000610907.2:ENST00000517403.5:ENST00000519596.5:ENST00000519622.5:ENST00000517921.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	121	2	2.63629	2.660275	2.68426	0.001315	6.27248e-4	0.0333932	0.0230267
chr22	45330350	45330433	7530350	0	+	0.542169	(0.515,0.57]	chr22	769968	4	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	FAM118A	ENSG00000100376.12	ENST00000216214.7:ENST00000441876.7:ENST00000476478.1:ENST00000459849.1:ENST00000476754.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	58	2	2.53845	2.660265	2.78208	0.00632226	0.00209264	0.0687526	0.0424943
chr7	26197215	26197314	3506200	0	-	0.333333	(0.32,0.35]	chr7	327181	3	EXON_MRNA	EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HNRNPA2B1	ENSG00000122566.22	ENST00000679318.1:ENST00000677339.1:ENST00000678501.1:ENST00000676903.1:ENST00000608362.2:ENST00000677631.1:ENST00000676749.1:ENST00000677574.1:ENST00000679123.1:ENST00000677906.1:ENST00000476233.2:ENST00000677669.1:ENST00000677321.1:ENST00000678277.1:ENST00000677571.1:ENST00000679124.1:ENST00000676932.1:ENST00000678973.1:ENST00000678183.1:ENST00000679021.1:ENST00000678035.1:ENST00000677075.1:ENST00000678075.1:ENST00000678631.1:ENST00000678998.1:ENST00000490912.6:ENST00000354667.8:ENST00000618183.5:ENST00000677839.1:ENST00000677037.1:ENST00000678449.1:ENST00000679001.1:ENST00000678962.1:ENST00000676524.1:ENST00000678935.1:ENST00000678675.1:ENST00000676746.1:ENST00000356674.8:ENST00000678431.1:ENST00000678697.1:ENST00000678779.1:ENST00000676497.1:ENST00000677396.1:ENST00000360787.8:ENST00000679243.1:ENST00000677656.1:ENST00000463181.5:ENST00000678884.1:ENST00000495810.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	95	2	2.56589	2.66026	2.75463	0.00387748	0.00204522	0.0543578	0.041908
chr10	35370653	35370753	4424844	0	+	0.28	[0,0.28]	chr10	407899	331	INTRON	INTRON	CCNY	ENSG00000108100.18	ENST00000374706.5:ENST00000490012.6:ENST00000493157.6:ENST00000374704.8:ENST00000265375.13:ENST00000339497.7:ENST00000492478.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	119	2	2.62314	2.6602249999999996	2.69731	0.00823246	0.00153564	0.0772885	0.0362144
chr22	41486848	41486948	7523715	0	+	0.46	(0.44,0.476]	chr22	768936	5	INTRON	INTRON	ACO2	ENSG00000100412.17	ENST00000676748.1:ENST00000677554.1:ENST00000679320.1:ENST00000678600.1:ENST00000678394.1:ENST00000676792.1:ENST00000678688.1:ENST00000677516.1:ENST00000678788.1:ENST00000677007.1:ENST00000676959.1:ENST00000679311.1:ENST00000216254.9:ENST00000676714.1:ENST00000466237.2:ENST00000677427.1:ENST00000678454.1:ENST00000677153.1:ENST00000678819.1:ENST00000396512.3:ENST00000678269.1:ENST00000677532.1:ENST00000471094.1:ENST00000679264.1:ENST00000677698.1:ENST00000676822.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	52	2	2.42996	2.660215	2.89047	0.0104804	0.00955699	0.0863913	0.0855777
chr8	129522676	129522776	4060509	0	-	0.34	(0.32,0.35]	chr8	369648	121	INTRON	INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1:ENST00000676273.1:ENST00000667643.1:ENST00000668791.1:ENST00000663716.1:ENST00000663572.1:ENST00000676148.1:ENST00000667962.1:ENST00000674877.1:ENST00000675316.1:ENST00000674656.1:ENST00000446592.7:ENST00000667341.1:ENST00000675186.1:ENST00000652971.1:ENST00000661447.1:ENST00000674863.1:ENST00000675498.1:ENST00000675527.1:ENST00000676108.1:ENST00000657647.1:ENST00000675589.1:ENST00000675913.1:ENST00000675109.1:ENST00000671632.1:ENST00000671311.1:ENST00000676099.1:ENST00000660652.1:ENST00000675522.1:ENST00000675183.1:ENST00000658861.1:ENST00000663991.1:ENST00000675044.1:ENST00000675435.1:ENST00000674639.1:ENST00000676069.1:ENST00000675532.1:ENST00000674762.1:ENST00000523151.6:ENST00000675948.1:ENST00000665364.1:ENST00000657251.1:ENST00000675166.1:ENST00000674883.1:ENST00000675867.1:ENST00000674580.1:ENST00000675393.1:ENST00000520048.1:ENST00000674906.1:ENST00000676030.1:ENST00000670588.1:ENST00000675072.1:ENST00000664936.1:ENST00000652914.1:ENST00000657069.1	lncRNA	lncRNA	lncRNA	lncRNA	10	172	2	2.40726	2.660195	2.91313	6.41184e-4	4.11364e-4	0.0231685	0.0181365
chr15	43749900	43750000	6012071	0	+	0.35	(0.32,0.35]	chr15	572614	3	SS3_PROX	SS3_PROX:INTRON	PDIA3	ENSG00000167004.14	ENST00000687794.1:ENST00000686402.1:ENST00000686175.1:ENST00000687211.1:ENST00000684837.1:ENST00000685864.1:ENST00000691274.1:ENST00000686314.1:ENST00000686929.1:ENST00000300289.10:ENST00000688851.1:ENST00000687167.1:ENST00000688652.1:ENST00000693281.1:ENST00000691893.1:ENST00000684793.1:ENST00000692341.1:ENST00000690274.1:ENST00000690371.1:ENST00000455250.2:ENST00000687665.1:ENST00000690271.1:ENST00000692484.1:ENST00000689152.1:ENST00000687465.1:ENST00000688330.1:ENST00000469684.2:ENST00000434494.5:ENST00000446523.5:ENST00000686227.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	59	2	1.99307	2.6601850000000002	3.3273	0.04271	0.00218894	0.148082	0.0435144
chr1	246930828	246930928	681952	0	-	0.35	(0.32,0.35]	chr1	80044	3	SS5_PROX	SS5_PROX:INTRON	AHCTF1	ENSG00000153207.16	ENST00000648844.2:ENST00000326225.3:ENST00000366508.5	protein_coding	protein_coding	protein_coding	protein_coding	7	132	2	2.48231	2.660125	2.83794	0.00132969	9.00082e-4	0.0335108	0.0277303
chr1	219199565	219199665	318637	0	+	0.48	(0.476,0.515]	chr1	36461	4	INTRON	INTRON	LYPLAL1	ENSG00000143353.12	ENST00000460522.5:ENST00000366927.3:ENST00000366928.10:ENST00000477938.5:ENST00000463964.5:ENST00000483635.5:ENST00000474379.5:ENST00000469590.5:ENST00000478794.5:ENST00000475724.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	81	2	2.65911	2.6601150000000002	2.66112	0.0044598	0.00116074	0.0592169	0.0314098
chr16	31181019	31181117	6340561	0	+	0.55102	(0.515,0.57]	chr16	608317	4	INTRON	INTRON	FUS	ENSG00000089280.19	ENST00000566605.5:ENST00000254108.12:ENST00000380244.7:ENST00000487045.6:ENST00000487509.6:ENST00000568685.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	34	470	2	2.40215	2.6600849999999996	2.91802	2.7365e-5	5.76473e-7	0.00413983	4.48558e-4
chr6	7121777	7121877	2798503	0	+	0.47	(0.44,0.476]	chr6	263723	127	INTRON	INTRON	RREB1	ENSG00000124782.21	ENST00000379933.7:ENST00000491191.5:ENST00000471433.5:ENST00000379938.7:ENST00000467782.5:ENST00000349384.10:ENST00000334984.10:ENST00000475946.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	79	2	1.44993	2.6600799999999998	3.87023	0.045367	2.32199e-4	0.164236	0.0139633
chr9	124660607	124660707	4348108	0	-	0.38	(0.378,0.408]	chr9	399255	649	INTRON	INTRON	NR6A1	ENSG00000148200.17	ENST00000487099.7:ENST00000373584.7:ENST00000416460.6:ENST00000344523.8	protein_coding	protein_coding	protein_coding	protein_coding	8	121	2	2.07223	2.660065	3.2479	0.00385645	2.54231e-4	0.0542786	0.0142045
chr10	72353907	72354002	4644306	0	-	0.431579	(0.408,0.44]	chr10	427347	7	UTR5	UTR5:EXON_MRNA:INTRON	DNAJB12	ENSG00000148719.16	ENST00000338820.7:ENST00000394903.6:ENST00000444643.8:ENST00000461919.5	protein_coding	protein_coding	protein_coding	protein_coding	2	38	2	2.6542	2.659995	2.66579	0.0227514	0.019342	0.119831	0.117618
chrX	134388337	134388436	7723652	0	+	0.424242	(0.408,0.44]	chrX	790107	33	EXON_LNCRNA	EXON_LNCRNA:INTRON	PHF6	ENSG00000156531.18	ENST00000685047.1:ENST00000687496.1:ENST00000685553.1:ENST00000625464.2:ENST00000370803.8:ENST00000332070.7:ENST00000370799.5:ENST00000691812.1:ENST00000688598.1:ENST00000693759.1:ENST00000687834.1:ENST00000370800.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	38	2	2.6542	2.659995	2.66579	0.0227514	0.019342	0.119831	0.117618
chr4	78829521	78829620	1981919	0	+	0.353535	(0.35,0.378]	chr4	198473	30	INTRON	INTRON	BMP2K	ENSG00000138756.19	ENST00000389010.7:ENST00000502613.3:ENST00000502871.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	156	2	2.4136	2.65999	2.90638	0.00136305	1.28984e-4	0.0336321	0.00979119
chr4	138210990	138211090	2245514	0	-	0.34	(0.32,0.35]	chr4	219484	254	INTRON	INTRON	SLC7A11	ENSG00000151012.13	ENST00000280612.9:ENST00000509248.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	137	2	2.3471	2.659945	2.97279	0.0156413	4.50278e-5	0.101393	0.0054649
chr16	21853583	21853683	6461773	0	-	0.43	(0.408,0.44]	chr16	623446	1	SS5_PROX	SS5_PROX:INTRON	NPIPB4	ENSG00000185864.18	ENST00000415645.6:ENST00000682606.1:ENST00000542133.5:ENST00000539318.5:ENST00000341400.11:ENST00000518761.8:ENST00000520808.6:ENST00000536041.5:ENST00000529969.1:ENST00000540103.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	82	2	2.19524	2.65991	3.12458	0.00990486	4.61817e-4	0.0838372	0.0194611
chr13	79379307	79379407	5626140	0	-	0.4	(0.378,0.408]	chr13	536666	4	SS3_PROX	SS3_PROX:INTRON	RBM26	ENSG00000139746.16	ENST00000438737.3:ENST00000438724.5:ENST00000622611.4:ENST00000267229.11:ENST00000472143.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	137	2	2.1245	2.659885	3.19527	0.00724232	1.98427e-5	0.0729826	0.00343561
chr3	183983576	183983664	1882273	0	-	0.522727	(0.515,0.57]	chr3	188190	1	INTRON	INTRON	ABCC5	ENSG00000114770.17	ENST00000334444.11:ENST00000265586.10:ENST00000437205.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	59	2	2.51561	2.659805	2.804	0.00635044	0.00215855	0.0723103	0.0417866
chr6	154766994	154767094	3002153	0	+	0.42	(0.408,0.44]	chr6	280737	246	INTRON	INTRON	SCAF8	ENSG00000213079.10	ENST00000367186.7:ENST00000417268.3:ENST00000461219.5:ENST00000367178.8:ENST00000464628.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	51	2	2.60048	2.659795	2.71911	0.0189489	0.00484324	0.108861	0.0640618
chr8	124486601	124486695	3852670	0	+	0.425532	(0.408,0.44]	chr8	355053	6	CDS	CDS:EXON_MRNA	RNF139	ENSG00000170881.5	ENST00000303545.4	protein_coding	protein_coding	protein_coding	protein_coding	3	51	2	2.60048	2.659795	2.71911	0.0189489	0.00484324	0.108861	0.0640618
chr9	77213614	77213714	4145286	0	+	0.44	(0.408,0.44]	chr9	377785	3	SS5_PROX	SS5_PROX:INTRON	VPS13A	ENSG00000197969.14	ENST00000376636.7:ENST00000360280.8:ENST00000643348.1:ENST00000645632.1	protein_coding	protein_coding	protein_coding	protein_coding	3	51	2	2.60048	2.659795	2.71911	0.0189489	0.00484324	0.108861	0.0640618
chr10	68340773	68340873	4440855	0	+	0.46	(0.44,0.476]	chr10	409501	2	SS3_PROX	SS3_PROX:INTRON	HNRNPH3	ENSG00000096746.18	ENST00000469172.5:ENST00000265866.12:ENST00000480987.5:ENST00000354695.5:ENST00000481819.5:ENST00000491200.5:ENST00000490442.5:ENST00000478698.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	161	2	2.54775	2.65972	2.77169	8.89744e-4	8.99896e-5	0.0274757	0.00795396
chr22	18563225	18563324	7550984	0	-	0.40404	(0.378,0.408]	chr22	771829	103	INTRON	INTRON	PI4KAP1	ENSG00000274602.5	ENST00000612500.4:ENST00000611748.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	5	85	2	2.10212	2.65972	3.21732	0.0141232	2.98082e-4	0.0959618	0.015483
chr4	67638542	67638642	2153821	0	-	0.37	(0.35,0.378]	chr4	212098	2	SS5_PROX	SS5_PROX:INTRON	UBA6	ENSG00000033178.13	ENST00000322244.10:ENST00000505673.2	protein_coding	protein_coding	protein_coding	protein_coding	5	89	2	2.23309	2.6597	3.08631	0.00930277	6.13845e-4	0.0817766	0.0223951
chr12	123610822	123610919	5243249	0	+	0.515464	(0.515,0.57]	chr12	498321	3	INTRON	INTRON	DDX55	ENSG00000111364.16	ENST00000542286.5:ENST00000238146.9:ENST00000544738.5:ENST00000538744.5:ENST00000354291.8:ENST00000539934.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	34	2	2.35125	2.659695	2.96814	0.0436431	0.00756432	0.162255	0.0749063
chr17	66693533	66693633	6666215	0	+	0.53	(0.515,0.57]	chr17	650368	41	INTRON	INTRON	PRKCA	ENSG00000154229.12	ENST00000413366.8:ENST00000578063.5:ENST00000284384.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	34	2	2.35125	2.659695	2.96814	0.0436431	0.00756432	0.162255	0.0749063
chr1	193152867	193152967	284927	0	+	0.54	(0.515,0.57]	chr1	32807	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CDC73	ENSG00000134371.14	ENST00000649895.1:ENST00000643006.1:ENST00000367435.5:ENST00000650197.1:ENST00000648071.1:ENST00000635846.1:ENST00000649606.1:ENST00000647662.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	11	133	2	1.81575	2.659545	3.50334	0.00527838	6.60157e-6	0.0635562	0.00181159
chr6	157855964	157856063	3016090	0	+	0.585859	(0.57,1]	chr6	281353	259	INTRON	INTRON	SNX9	ENSG00000130340.17	ENST00000614703.4:ENST00000614800.4:ENST00000680863.1:ENST00000679814.1:ENST00000680464.1:ENST00000681186.1:ENST00000679732.1:ENST00000681183.1:ENST00000681534.1:ENST00000681651.1:ENST00000680089.1:ENST00000680078.1:ENST00000680974.1:ENST00000680095.1:ENST00000680015.1:ENST00000681138.1:ENST00000392185.8:ENST00000679790.1:ENST00000680495.1:ENST00000679691.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	28	2	2.6547	2.65954	2.66438	0.0171563	0.00346848	0.104099	0.0539802
chr5	180503184	180503284	2561951	0	+	0.31	(0.28,0.32]	chr5	245082	72	INTRON	INTRON	CNOT6	ENSG00000113300.13	ENST00000261951.9:ENST00000393356.7:ENST00000507016.1:ENST00000618123.4:ENST00000502447.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	88	2	2.12129	2.659515	3.19774	0.00696605	0.00548491	0.0754576	0.0648867
chr10	833345	833443	4541589	0	-	0.44898	(0.44,0.476]	chr10	419243	20	INTRON	INTRON	LARP4B	ENSG00000107929.16	ENST00000688365.1:ENST00000316157.8:ENST00000690516.1:ENST00000689323.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	85	2	1.38315	2.6595	3.93585	0.0472692	1.04728e-4	0.152795	0.00863456
chr1	44754570	44754649	92464	0	+	0.56962	(0.515,0.57]	chr1	12285	4	SS3_PROX	SS3_PROX:INTRON	KIF2C	ENSG00000142945.13	ENST00000452259.5:ENST00000493027.5:ENST00000372224.9:ENST00000455186.5:ENST00000372217.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	58	2	2.48902	2.6594800000000003	2.82994	0.00760558	0.00168661	0.0749571	0.0381778
chr19	28526409	28526509	7166359	0	-	0.25	[0,0.28]	chr19	724189	582	INTRON	INTRON	ENSG00000283403:ENSG00000267243	ENSG00000283403.1:ENSG00000267243.6	ENST00000592347.5:ENST00000593065.5	lncRNA	lncRNA	lncRNA	lncRNA	10	217	2	1.73459	2.65946	3.58433	0.0174483	1.79638e-5	0.104683	0.00323573
chr4	174318070	174318169	2082937	0	+	0.565657	(0.515,0.57]	chr4	205864	8	UTR3	UTR3:EXON_MRNA:INTRON	CEP44	ENSG00000164118.13	ENST00000457424.6:ENST00000396791.7:ENST00000503780.6:ENST00000426172.3:ENST00000296519.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	26	338	2	2.5067	2.6594499999999996	2.8122	4.05038e-5	1.40511e-6	0.00539487	7.04076e-4
chr11	66618308	66618395	4810813	0	+	0.436782	(0.408,0.44]	chr11	447846	4	SS3_PROX	SS3_PROX:INTRON	RBM14-RBM4:RBM14	ENSG00000248643.5:ENSG00000239306.5	ENST00000412278.2:ENST00000393979.3:ENST00000511114.1:ENST00000310137.5:ENST00000409372.1:ENST00000421355.1:ENST00000443702.1:ENST00000500635.2:ENST00000409738.4:ENST00000460762.1:ENST00000461478.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	62	2	2.00629	2.65943	3.31257	0.0189661	0.00198621	0.108861	0.0411469
chr12	132815653	132815749	5450087	0	-	0.489583	(0.476,0.515]	chr12	522096	19	INTRON	INTRON	GOLGA3	ENSG00000090615.16	ENST00000204726.9:ENST00000450791.8:ENST00000688114.1:ENST00000685283.1:ENST00000691696.1:ENST00000691636.1:ENST00000690897.1:ENST00000456883.7:ENST00000545875.4:ENST00000688251.1:ENST00000692951.1:ENST00000686751.1:ENST00000685580.1:ENST00000687165.1:ENST00000692384.1:ENST00000685120.1:ENST00000689813.1:ENST00000693112.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	50	2	2.43242	2.65936	2.8863	0.0111679	0.0091895	0.0877435	0.0855292
chr17	31879478	31879577	6752687	0	-	0.515152	(0.476,0.515]	chr17	663763	3	INTRON	INTRON	UTP6	ENSG00000108651.10	ENST00000261708.9:ENST00000477128.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	50	2	2.43242	2.65936	2.8863	0.0111679	0.0091895	0.0877435	0.0855292
chr2	53886564	53886661	1119682	0	-	0.484536	(0.476,0.515]	chr2	119887	4	INTRON	INTRON	PSME4	ENSG00000068878.15	ENST00000404125.6:ENST00000389993.7:ENST00000476586.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	50	2	2.43242	2.65936	2.8863	0.0111679	0.0091895	0.0877435	0.0855292
chr6	3000964	3001061	2787857	0	+	0.505155	(0.476,0.515]	chr6	263216	2	INTRON	INTRON	NQO2	ENSG00000124588.22	ENST00000426637.5:ENST00000380472.7:ENST00000380455.11:ENST00000397717.7:ENST00000338130.7:ENST00000380441.5:ENST00000380454.8:ENST00000380430.6	protein_coding	protein_coding	protein_coding	protein_coding	3	50	2	2.43242	2.65936	2.8863	0.0111679	0.0091895	0.0877435	0.0855292
chr3	128756836	128756936	1497517	0	+	0.48	(0.476,0.515]	chr3	156330	301	INTRON	INTRON	RAB7A	ENSG00000075785.14	ENST00000676214.1:ENST00000675864.1:ENST00000675712.1:ENST00000676425.1:ENST00000490093.6:ENST00000675342.1:ENST00000265062.8:ENST00000674748.1:ENST00000493186.6:ENST00000482525.5:ENST00000491681.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	50	2	2.32001	2.659265	2.99852	0.0136217	0.0077575	0.101682	0.0757402
chr7	141749910	141750010	3440218	0	+	0.48	(0.476,0.515]	chr7	320696	2	SS3_PROX	SS3_PROX:INTRON	SSBP1	ENSG00000106028.11	ENST00000612337.4:ENST00000265304.11:ENST00000498107.5:ENST00000469123.5:ENST00000467681.5:ENST00000465582.5:ENST00000465167.1:ENST00000484178.5:ENST00000481508.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	50	2	2.32001	2.659265	2.99852	0.0136217	0.0077575	0.101682	0.0757402
chr1	23331319	23331419	399458	0	-	0.43	(0.408,0.44]	chr1	47865	72	INTRON	INTRON	HNRNPR	ENSG00000125944.21	ENST00000478691.5:ENST00000302271.11:ENST00000374616.7:ENST00000374612.5:ENST00000675048.1:ENST00000606561.5:ENST00000427764.3:ENST00000463552.5:ENST00000470941.5:ENST00000476451.2	protein_coding	protein_coding	protein_coding	protein_coding	20	307	2	2.00219	2.65912	3.31605	0.00132215	3.74874e-7	0.03324	3.14677e-4
chr2	167880363	167880463	1258605	0	-	0.35	(0.32,0.35]	chr2	133334	100	INTRON	INTRON	B3GALT1-AS1	ENSG00000235335.3	ENST00000430546.2:ENST00000657553.1:ENST00000670221.1:ENST00000436982.2	lncRNA	lncRNA	lncRNA	lncRNA	3	59	2	2.19668	2.65907	3.12146	0.021398	0.00630799	0.123719	0.0687526
chr1	224930534	224930634	322360	0	+	0.33	(0.32,0.35]	chr1	37105	3	INTRON	INTRON	DNAH14	ENSG00000185842.16	ENST00000445597.6:ENST00000430092.5:ENST00000366850.7:ENST00000400952.7:ENST00000682510.1:ENST00000366849.5:ENST00000498360.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	79	2	2.53107	2.659065	2.78706	0.00860484	0.00253645	0.0784134	0.0465056
chr1	99709027	99709120	514744	0	-	0.344086	(0.32,0.35]	chr1	60323	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	FRRS1	ENSG00000156869.14	ENST00000646001.2:ENST00000287474.9	protein_coding	protein_coding	protein_coding	protein_coding	7	105	2	2.23876	2.659055	3.07935	0.00724137	0.0014746	0.0729826	0.0352696
chr8	102404879	102404979	4012678	0	-	0.37	(0.35,0.378]	chr8	367237	429	INTRON	INTRON	UBR5	ENSG00000104517.13	ENST00000520539.6:ENST00000220959.8:ENST00000521922.5	protein_coding	protein_coding	protein_coding	protein_coding	5	89	2	2.1686	2.6590350000000003	3.14947	0.0116706	4.50721e-4	0.0891208	0.0192381
chr12	110292424	110292524	5226211	0	+	0.52	(0.515,0.57]	chr12	495239	3	SS5_PROX	SS5_PROX:INTRON	ATP2A2	ENSG00000174437.18	ENST00000552636.2:ENST00000308664.10:ENST00000539276.7:ENST00000377685.9:ENST00000548169.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	126	2	2.47052	2.6589400000000003	2.84736	4.72534e-4	1.75303e-4	0.0201458	0.0115194
chr22	50207020	50207116	7544074	0	+	0.572917	(0.57,1]	chr22	770979	1	INTRON	INTRON	SELENOO	ENSG00000073169.15	ENST00000380903.7:ENST00000492092.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	28	2	2.05026	2.65893	3.2676	0.0321326	0.00176203	0.145026	0.0376652
chr3	10101453	10101549	1362986	0	+	0.59375	(0.57,1]	chr3	143645	3	UTR3	UTR3:EXON_MRNA	FANCD2	ENSG00000144554.13	ENST00000675286.1:ENST00000419585.5:ENST00000421731.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	28	2	2.05026	2.65893	3.2676	0.0321326	0.00176203	0.145026	0.0376652
chr15	50359337	50359436	6022084	0	+	0.575758	(0.57,1]	chr15	573922	45	EXON_LNCRNA	EXON_LNCRNA:INTRON	GABPB1-AS1	ENSG00000244879.9	ENST00000668321.1:ENST00000499624.3:ENST00000648591.1:ENST00000558593.1	lncRNA	lncRNA	lncRNA	lncRNA	4	36	2	2.6547	2.658875	2.66305	0.00346848	0.00327879	0.0539802	0.0509077
chr19	3405304	3405403	7000014	0	+	0.585859	(0.57,1]	chr19	694173	227	INTRON	INTRON	NFIC	ENSG00000141905.19	ENST00000641145.1:ENST00000589123.5:ENST00000395111.7:ENST00000586919.5:ENST00000341919.7:ENST00000443272.3:ENST00000590282.5	protein_coding	protein_coding	protein_coding	protein_coding	4	36	2	2.6547	2.658875	2.66305	0.00346848	0.00327879	0.0539802	0.0509077
chr2	171536141	171536240	917463	0	+	0.50505	(0.476,0.515]	chr2	101030	125	INTRON	INTRON	CYBRD1	ENSG00000071967.12	ENST00000409484.5:ENST00000468308.1:ENST00000321348.9:ENST00000375252.3:ENST00000474182.1:ENST00000494587.1:ENST00000445146.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	136	2	1.8607	2.658855	3.45701	0.00860776	1.2733e-5	0.0784337	0.00265846
chrX	123967497	123967597	7716810	0	+	0.52	(0.515,0.57]	chrX	789462	37	INTRON	INTRON	STAG2	ENSG00000101972.20	ENST00000394477.5:ENST00000218089.13:ENST00000455404.5:ENST00000483575.5:ENST00000687810.1:ENST00000687071.1:ENST00000469481.1:ENST00000458700.5:ENST00000371160.5:ENST00000435103.5:ENST00000687852.1:ENST00000371145.8:ENST00000692982.1:ENST00000371157.7:ENST00000691035.1:ENST00000686802.1:ENST00000691383.1:ENST00000686127.1:ENST00000371144.7:ENST00000458176.5:ENST00000466748.5:ENST00000471107.1:ENST00000428941.5:ENST00000435215.5:ENST00000394478.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	52	2	2.17039	2.658845	3.1473	0.00900252	0.00397184	0.0851009	0.0549214
chr9	111906408	111906508	4184547	0	+	0.46	(0.44,0.476]	chr9	381684	87	INTRON	INTRON	UGCG	ENSG00000148154.10	ENST00000374279.4:ENST00000489355.1:ENST00000495085.1:ENST00000490110.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	130	2	2.06893	2.65882	3.24871	0.00145151	3.52936e-4	0.0349797	0.0174637
chr1	155684213	155684312	563279	0	-	0.363636	(0.35,0.378]	chr1	67204	34	INTRON	INTRON	YY1AP1	ENSG00000163374.20	ENST00000368339.9:ENST00000295566.8:ENST00000368330.6:ENST00000436865.5:ENST00000359205.9:ENST00000407221.5:ENST00000404643.5:ENST00000361140.8:ENST00000361831.9:ENST00000347088.9:ENST00000354691.9:ENST00000368340.9:ENST00000311573.9:ENST00000355499.9:ENST00000405763.7:ENST00000476093.5:ENST00000443231.5:ENST00000476027.5:ENST00000454523.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	13	207	2	1.87738	2.658805	3.44023	0.00459138	4.55779e-6	0.0595384	0.00144313
chr7	102668614	102668714	3589209	0	-	0.38	(0.378,0.408]	chr7	335098	3	SS5_PROX	SS5_PROX:INTRON	ENSG00000267645:POLR2J2	ENSG00000267645.5:ENSG00000228049.7	ENST00000476151.5:ENST00000358438.6:ENST00000333432.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	42	2	2.26252	2.6587699999999996	3.05502	0.056222	0.00689519	0.18407	0.0717484
chr1	211824062	211824162	631341	0	-	0.55	(0.515,0.57]	chr1	74654	305	INTRON	INTRON	LPGAT1	ENSG00000123684.13	ENST00000366997.9:ENST00000366996.1	protein_coding	protein_coding	protein_coding	protein_coding	4	52	2	2.06206	2.658765	3.25547	0.0135396	0.00261721	0.101363	0.0455413
chr16	23874511	23874611	6324145	0	+	0.38	(0.378,0.408]	chr16	605697	53	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000645517.1:ENST00000498739.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	17	252	2	1.77042	2.65875	3.54708	0.00438764	6.15482e-7	0.0585064	4.25689e-4
chr2	71340124	71340223	807094	0	+	0.353535	(0.35,0.378]	chr2	90134	52	INTRON	INTRON	ZNF638	ENSG00000075292.19	ENST00000494621.5:ENST00000410075.5:ENST00000466975.5:ENST00000466330.5:ENST00000437658.2:ENST00000464375.5:ENST00000475743.1:ENST00000409544.5:ENST00000455226.5:ENST00000454278.5:ENST00000264447.9:ENST00000454122.1:ENST00000417778.5:ENST00000487707.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	56	2	1.81767	2.65867	3.49967	0.0640429	9.80974e-4	0.177882	0.0287765
chr7	77561043	77561143	3342251	0	+	0.36	(0.35,0.378]	chr7	311312	149	INTRON	INTRON	PTPN12	ENSG00000127947.16	ENST00000248594.11:ENST00000460731.5:ENST00000523952.5:ENST00000433369.6:ENST00000415482.6:ENST00000435495.6:ENST00000418110.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	56	2	1.81767	2.65867	3.49967	0.0640429	9.80974e-4	0.177882	0.0287765
chr7	76048686	76048776	3339658	0	+	0.488889	(0.476,0.515]	chr7	310989	2	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	MDH2	ENSG00000146701.12	ENST00000461263.2:ENST00000443006.5:ENST00000315758.10:ENST00000461665.5:ENST00000432020.2:ENST00000490105.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	114	2	2.65814	2.658625	2.65911	0.00116074	6.21095e-4	0.0314098	0.0229151
chr19	16872566	16872666	7027818	0	+	0.5	(0.476,0.515]	chr19	699542	2	EXON_LNCRNA	EXON_LNCRNA:INTRON	SIN3B	ENSG00000127511.10	ENST00000248054.10:ENST00000379803.5:ENST00000595541.1:ENST00000595900.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	81	2	2.17347	2.65855	3.14363	0.010447	4.25082e-4	0.0855102	0.018441
chr2	190917730	190917830	959857	0	+	0.38	(0.378,0.408]	chr2	104198	40	INTRON	INTRON	GLS	ENSG00000115419.13	ENST00000320717.8:ENST00000338435.8:ENST00000417154.5:ENST00000461965.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	63	2	1.99678	2.65847	3.32016	0.0177959	0.00268328	0.113452	0.0464781
chr6	73474054	73474154	2904208	0	+	0.48	(0.476,0.515]	chr6	274371	4	SS5_PROX	SS5_PROX:INTRON	MTO1	ENSG00000135297.17	ENST00000415954.6:ENST00000681094.1:ENST00000680289.1:ENST00000680775.1:ENST00000680609.1:ENST00000681212.1:ENST00000679627.1:ENST00000679675.1:ENST00000680350.1:ENST00000681610.1:ENST00000681294.1:ENST00000680686.1:ENST00000681509.1:ENST00000680570.1:ENST00000680131.1:ENST00000681284.1:ENST00000681890.1:ENST00000680266.1:ENST00000680875.1:ENST00000679905.1:ENST00000681620.1:ENST00000681204.1:ENST00000681705.1:ENST00000681691.1:ENST00000679612.1:ENST00000681141.1:ENST00000498286.6:ENST00000681254.1:ENST00000681624.1:ENST00000679418.1:ENST00000681579.1:ENST00000681267.1:ENST00000680902.1:ENST00000680238.1:ENST00000681165.1:ENST00000679364.1:ENST00000679411.1:ENST00000679604.1:ENST00000679900.1:ENST00000680601.1:ENST00000487960.2:ENST00000521156.6:ENST00000445187.6:ENST00000680034.1:ENST00000442897.7:ENST00000679808.1:ENST00000679993.1:ENST00000522205.6:ENST00000680544.1:ENST00000370305.5:ENST00000680428.1:ENST00000679352.1:ENST00000679524.1:ENST00000681932.1:ENST00000680195.1:ENST00000681438.1:ENST00000679730.1:ENST00000681337.1:ENST00000679947.1:ENST00000680405.1:ENST00000680794.1:ENST00000679870.1:ENST00000524046.2:ENST00000679592.1:ENST00000370300.8:ENST00000370308.8:ENST00000415228.5:ENST00000462039.5:ENST00000680758.1:ENST00000523763.2:ENST00000679591.1:ENST00000680841.1:ENST00000680563.1:ENST00000681500.1:ENST00000466977.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	81	2	2.34867	2.658455	2.96824	0.00539703	9.98194e-4	0.0644048	0.0290732
chr22	45330184	45330267	7530348	0	+	0.457831	(0.44,0.476]	chr22	769968	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	FAM118A	ENSG00000100376.12	ENST00000216214.7:ENST00000441876.7:ENST00000476478.1:ENST00000459849.1:ENST00000476754.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	35	516	2	2.55431	2.65844	2.76257	1.19105e-5	5.46282e-6	0.00274108	0.00162138
chr22	19425808	19425907	7554366	0	-	0.373737	(0.35,0.378]	chr22	772317	147	INTRON	INTRON	HIRA:C22orf39	ENSG00000100084.14:ENSG00000242259.9	ENST00000263208.5:ENST00000340170.8:ENST00000509549.5:ENST00000464189.5:ENST00000452818.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	140	2	2.55441	2.658405	2.7624	0.00126698	2.88804e-4	0.0325433	0.0150776
chr10	87766019	87766119	4662049	0	-	0.3	(0.28,0.32]	chr10	429549	4	SS5_PROX	SS5_PROX:INTRON	ATAD1	ENSG00000138138.14	ENST00000680024.1:ENST00000308448.11:ENST00000681308.1:ENST00000328142.3:ENST00000681602.1:ENST00000680388.1:ENST00000681629.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	47	2	2.45545	2.65829	2.86113	0.0438092	0.0122675	0.14901	0.0969406
chr11	5608794	5608894	4726481	0	+	0.29	(0.28,0.32]	chr11	437415	4	SS5_PROX	SS5_PROX:INTRON	TRIM6	ENSG00000121236.21	ENST00000278302.9:ENST00000424369.5:ENST00000507320.5:ENST00000380107.5:ENST00000380097.8:ENST00000511284.5:ENST00000445329.5:ENST00000506134.5:ENST00000515022.5:ENST00000621176.1:ENST00000469187.5:ENST00000481603.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	47	2	2.45545	2.65829	2.86113	0.0438092	0.0122675	0.14901	0.0969406
chr4	17808824	17808924	2116448	0	-	0.52	(0.515,0.57]	chr4	209071	32	INTRON	INTRON	DCAF16	ENSG00000163257.11	ENST00000382247.6:ENST00000507768.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	109	2	2.08662	2.65828	3.22994	0.00375149	5.65367e-5	0.0562562	0.00655354
chr6	169662003	169662103	3266708	0	-	0.32	(0.28,0.32]	chr6	303195	3	SS5_PROX	SS5_PROX:INTRON	WDR27	ENSG00000184465.16	ENST00000448612.6:ENST00000648472.1:ENST00000423258.5:ENST00000647790.1:ENST00000546525.5:ENST00000467418.1:ENST00000647873.1:ENST00000649303.1:ENST00000647889.1:ENST00000648017.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	48	2	2.18975	2.6582749999999997	3.1268	0.0776042	0.00508956	0.196285	0.0646039
chr12	48659468	48659567	5319034	0	-	0.535354	(0.515,0.57]	chr12	506325	9	INTRON	INTRON	KANSL2	ENSG00000139620.13	ENST00000420613.7:ENST00000548147.5:ENST00000550347.5:ENST00000546701.5:ENST00000548701.5:ENST00000547087.5:ENST00000549574.5:ENST00000553086.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	44	2	2.62817	2.65825	2.68833	0.0184931	0.004048	0.108861	0.0578376
chr15	44436993	44437093	6014445	0	+	0.29	(0.28,0.32]	chr15	572914	85	INTRON	INTRON	CTDSPL2	ENSG00000137770.14	ENST00000558791.5:ENST00000260327.9:ENST00000560834.1:ENST00000558966.5:ENST00000559793.5:ENST00000558968.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	47	2	2.51488	2.658225	2.80157	0.0380957	0.0147132	0.141678	0.106558
chr7	105378349	105378449	3603800	0	-	0.3	(0.28,0.32]	chr7	336161	714	INTRON	INTRON	SRPK2	ENSG00000135250.17	ENST00000393651.8:ENST00000482897.5:ENST00000460391.5:ENST00000462282.5:ENST00000465112.5:ENST00000482862.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	47	2	2.51488	2.658225	2.80157	0.0380957	0.0147132	0.141678	0.106558
chr1	180674260	180674360	270018	0	+	0.57	(0.515,0.57]	chr1	31614	416	INTRON	INTRON	XPR1	ENSG00000143324.14	ENST00000367590.9:ENST00000367589.3	protein_coding	protein_coding	protein_coding	protein_coding	3	44	2	2.32967	2.65822	2.98677	0.0133671	0.00632549	0.0946278	0.0722266
chr15	64535649	64535749	6044840	0	+	0.36	(0.35,0.378]	chr15	575696	327	INTRON	INTRON	ZNF609	ENSG00000180357.10	ENST00000326648.5:ENST00000558680.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	56	2	2.32464	2.658185	2.99173	0.0159285	0.00713365	0.101453	0.0756118
chr7	158649340	158649439	3688209	0	-	0.343434	(0.32,0.35]	chr7	342131	24	INTRON	INTRON	NCAPG2	ENSG00000146918.20	ENST00000356309.8:ENST00000432615.5:ENST00000409423.5:ENST00000441982.5:ENST00000467785.5:ENST00000409339.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	121	2	2.34252	2.658155	2.97379	0.00164543	0.00141529	0.0369207	0.034601
chr18	13742905	13742989	6878144	0	+	0.369048	(0.35,0.378]	chr18	681642	4	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	RNMT	ENSG00000101654.18	ENST00000543302.6:ENST00000588457.5:ENST00000383314.7:ENST00000592764.5:ENST00000589866.5:ENST00000262173.7:ENST00000588417.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	41	2	2.32443	2.65808	2.99173	0.0544216	0.00713365	0.164972	0.0756118
chr11	9432188	9432286	4729910	0	+	0.438776	(0.408,0.44]	chr11	437916	8	INTRON	INTRON	IPO7	ENSG00000205339.10	ENST00000379719.8	protein_coding	protein_coding	protein_coding	protein_coding	4	68	2	2.45003	2.658075	2.86612	0.00990006	0.00157924	0.0838372	0.0366789
chr4	150678187	150678287	2268353	0	-	0.42	(0.408,0.44]	chr4	220713	787	INTRON	INTRON	LRBA	ENSG00000198589.14	ENST00000357115.9:ENST00000651943.2:ENST00000510413.5:ENST00000509835.5:ENST00000651695.1:ENST00000651035.1:ENST00000507224.5:ENST00000513021.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	85	2	2.62147	2.65802	2.69457	0.00331036	0.00180223	0.0527031	0.0382461
chr22	20521371	20521469	7479486	0	+	0.520408	(0.515,0.57]	chr22	762957	20	INTRON	INTRON	MED15	ENSG00000099917.17	ENST00000445987.5:ENST00000444094.5:ENST00000414658.5:ENST00000486656.5:ENST00000433831.5:ENST00000432052.5:ENST00000292733.11:ENST00000263205.11:ENST00000477824.5:ENST00000406969.5:ENST00000382974.6:ENST00000441501.5:ENST00000438962.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	66	2	1.73535	2.6579949999999997	3.58064	0.0165373	6.54693e-4	0.110511	0.0233335
chr3	108052761	108052860	1768900	0	-	0.515152	(0.476,0.515]	chr3	178921	9	EXON_MRNA	EXON_MRNA:INTRON	CD47	ENSG00000196776.17	ENST00000361309.6:ENST00000355354.13:ENST00000471694.1:ENST00000517766.5:ENST00000398258.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	112	2	2.17183	2.657965	3.1441	0.00174985	5.63876e-4	0.0386524	0.0219303
chr17	31938118	31938216	6595686	0	+	0.377551	(0.35,0.378]	chr17	641540	2	INTRON	INTRON	SUZ12	ENSG00000178691.11	ENST00000322652.10:ENST00000580398.1	protein_coding	protein_coding	protein_coding	protein_coding	5	89	2	2.59656	2.657945	2.71933	0.00638551	9.31518e-4	0.0693551	0.0278746
chr2	233850059	233850159	1343816	0	-	0.59	(0.57,1]	chr2	140852	2	SS3_PROX	SS3_PROX:INTRON	HJURP	ENSG00000123485.12	ENST00000432087.5:ENST00000441687.5:ENST00000411486.7:ENST00000414924.5:ENST00000454020.1:ENST00000453122.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	51	2	2.55379	2.657945	2.7621000000000002	0.0015786	5.29607e-4	0.0362091	0.0207276
chr10	68584923	68585023	4441132	0	+	0.46	(0.44,0.476]	chr10	409524	103	INTRON	INTRON	TET1	ENSG00000138336.9	ENST00000373644.5	protein_coding	protein_coding	protein_coding	protein_coding	4	61	2	1.7651	2.65789	3.55068	0.039388	7.06861e-4	0.143072	0.0241881
chr7	74882440	74882533	3556675	0	-	0.462366	(0.44,0.476]	chr7	331157	4	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	STAG3L2	ENSG00000277072.5	ENST00000651031.1:ENST00000650988.1:ENST00000652688.1:ENST00000426587.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	5	81	2	2.50105	2.6578350000000004	2.81462	0.00247064	0.00240161	0.0452061	0.0446195
chr19	21743819	21743916	7159062	0	-	0.360825	(0.35,0.378]	chr19	723711	2	SS5_PROX	SS5_PROX:INTRON	ZNF100	ENSG00000197020.12	ENST00000358296.11:ENST00000305570.10:ENST00000594401.1:ENST00000598026.1	protein_coding	protein_coding	protein_coding	protein_coding	6	103	2	2.64997	2.657825	2.66568	0.00496487	5.26167e-4	0.0615009	0.0206193
chr16	58624552	58624652	6496332	0	-	0.46	(0.44,0.476]	chr16	628647	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	CNOT1	ENSG00000125107.19	ENST00000317147.10:ENST00000569240.5:ENST00000567188.5:ENST00000441024.6:ENST00000565605.5:ENST00000564557.1:ENST00000569916.1:ENST00000565697.1:ENST00000569020.5:ENST00000568158.1:ENST00000569263.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	71	2	1.90375	2.657755	3.41176	0.0156406	0.00130987	0.101393	0.0333932
chr3	47757061	47757161	1684828	0	-	0.5	(0.476,0.515]	chr3	172116	107	INTRON	INTRON	SMARCC1	ENSG00000173473.11	ENST00000254480.10:ENST00000425518.5:ENST00000454240.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	90	2	1.58335	2.657725	3.7321	0.0640461	1.52889e-5	0.177882	0.00293847
chr21	6325676	6325775	7364830	0	+	0.353535	(0.35,0.378]	chr21	751664	12	INTRON	INTRON	ENSG00000278903	ENSG00000278903.4	ENST00000688458.1:ENST00000689306.1:ENST00000692898.1:ENST00000624576.3:ENST00000623738.3:ENST00000692237.1:ENST00000692046.1:ENST00000689354.1:ENST00000624165.1	lncRNA	lncRNA	lncRNA	lncRNA	3	55	2	2.59046	2.657715	2.72497	0.0198266	0.00528327	0.109608	0.0656295
chr1	10052361	10052461	19320	0	+	0.4	(0.378,0.408]	chr1	1838	183	INTRON	INTRON	UBE4B	ENSG00000130939.20	ENST00000672724.1:ENST00000253251.12:ENST00000343090.11:ENST00000377153.5	protein_coding	protein_coding	protein_coding	protein_coding	2	39	2	2.38873	2.6576899999999997	2.92665	0.0458857	0.0086017	0.149888	0.083729
chr1	26699538	26699638	51206	0	+	0.38	(0.378,0.408]	chr1	6542	16	INTRON	INTRON	ARID1A	ENSG00000117713.21	ENST00000430799.7:ENST00000324856.13:ENST00000637465.1:ENST00000457599.6	protein_coding	protein_coding	protein_coding	protein_coding	2	39	2	2.38873	2.6576899999999997	2.92665	0.0458857	0.0086017	0.149888	0.083729
chr1	44745805	44745905	92364	0	+	0.38	(0.378,0.408]	chr1	12252	44	INTRON	INTRON	KIF2C	ENSG00000142945.13	ENST00000452259.5:ENST00000493027.5:ENST00000372224.9:ENST00000455186.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	39	2	2.38873	2.6576899999999997	2.92665	0.0458857	0.0086017	0.149888	0.083729
chr15	28291887	28291987	6123760	0	-	0.38	(0.378,0.408]	chr15	583388	112	INTRON	INTRON	HERC2	ENSG00000128731.18	ENST00000261609.13:ENST00000564734.5:ENST00000564383.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	39	2	2.38873	2.6576899999999997	2.92665	0.0458857	0.0086017	0.149888	0.083729
chr5	19031697	19031797	2569379	0	-	0.38	(0.378,0.408]	chr5	246196	651	INTRON	INTRON	ENSG00000249174	ENSG00000249174.1	ENST00000504827.1	lncRNA	lncRNA	lncRNA	lncRNA	2	39	2	2.38873	2.6576899999999997	2.92665	0.0458857	0.0086017	0.149888	0.083729
chr16	8069322	8069422	6441202	0	-	0.37	(0.35,0.378]	chr16	620351	617	INTRON	INTRON	ENSG00000260289	ENSG00000260289.2	ENST00000670665.1:ENST00000654046.1:ENST00000567103.2	lncRNA	lncRNA	lncRNA	lncRNA	2	41	2	2.6498	2.657635	2.66547	0.0233639	0.0210137	0.122348	0.118323
chr16	23642454	23642520	6323244	0	+	0.363636	(0.35,0.378]	chr16	605581	1	SS3_PROX	SS3_PROX:INTRON	DCTN5	ENSG00000166847.10	ENST00000300087.7:ENST00000563998.5:ENST00000566053.5:ENST00000568589.5:ENST00000563188.5:ENST00000568272.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	41	2	2.6498	2.657635	2.66547	0.0233639	0.0210137	0.122348	0.118323
chr18	9125496	9125588	6868829	0	+	0.282609	(0.28,0.32]	chr18	680538	1	INTRON	INTRON	NDUFV2	ENSG00000178127.13	ENST00000318388.11:ENST00000400033.1:ENST00000465096.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	90	2	2.31129	2.65762	3.00395	0.0101329	0.00319044	0.0850389	0.0520345
chr7	152422433	152422533	3681158	0	-	0.43	(0.408,0.44]	chr7	341660	634	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000682301.1:ENST00000452749.2:ENST00000680867.1:ENST00000683800.1:ENST00000684278.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	23	355	2	2.36301	2.65762	2.95223	1.83118e-4	1.83792e-6	0.0122816	8.23476e-4
chr19	28533001	28533100	7166425	0	-	0.232323	[0,0.28]	chr19	724189	648	INTRON	INTRON	ENSG00000283403:ENSG00000267243	ENSG00000283403.1:ENSG00000267243.6	ENST00000592347.5:ENST00000593065.5	lncRNA	lncRNA	lncRNA	lncRNA	23	437	2	2.05196	2.65752	3.26308	7.22935e-4	5.62488e-5	0.0245647	0.00655354
chr3	37101429	37101529	1655870	0	-	0.45	(0.44,0.476]	chr3	169934	44	INTRON	INTRON	LRRFIP2	ENSG00000093167.18	ENST00000336686.9:ENST00000354379.8:ENST00000421276.6:ENST00000396428.6:ENST00000440230.5:ENST00000416425.5:ENST00000481682.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	94	2	1.83459	2.657515	3.48044	0.0198542	6.78832e-5	0.109608	0.00682671
chr17	81586798	81586897	6849087	0	-	0.484848	(0.476,0.515]	chr17	678158	144	INTRON	INTRON	NPLOC4	ENSG00000182446.14	ENST00000331134.11:ENST00000374747.9:ENST00000574897.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	112	2	1.18068	2.65751	4.13434	0.0432233	5.88252e-5	0.162255	0.00669884
chr6	42744764	42744853	3095455	0	-	0.573034	(0.57,1]	chr6	289570	4	UTR3	UTR3:EXON_MRNA	TBCC	ENSG00000124659.7	ENST00000372876.2	protein_coding	protein_coding	protein_coding	protein_coding	12	101	2	2.28472	2.65749	3.03026	7.1544e-4	3.77109e-6	0.0244077	0.00139718
chr16	30714011	30714111	6338811	0	+	0.5	(0.476,0.515]	chr16	607781	3	SS5_PROX	SS5_PROX:INTRON	SRCAP	ENSG00000080603.17	ENST00000262518.9:ENST00000395059.6:ENST00000483083.3	protein_coding	protein_coding	protein_coding	protein_coding	4	60	2	2.06898	2.65747	3.24596	0.0137491	0.00322919	0.10247	0.0507087
chr14	102723211	102723309	5823853	0	+	0.418367	(0.408,0.44]	chr14	552546	4	INTRON	INTRON	RCOR1	ENSG00000089902.10	ENST00000262241.7:ENST00000560472.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	51	2	2.00228	2.657425	3.31257	0.0389732	0.00198621	0.143072	0.0411469
chr15	44525464	44525563	6015348	0	+	0.393939	(0.378,0.408]	chr15	573001	14	UTR3	UTR3:EXON_MRNA	CTDSPL2	ENSG00000137770.14	ENST00000260327.9:ENST00000558373.5:ENST00000559175.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	39	2	2.60296	2.657395	2.71183	0.0267851	0.0170789	0.123349	0.110899
chr3	196741456	196741556	1595509	0	+	0.38	(0.378,0.408]	chr3	165300	9	INTRON	INTRON	PAK2	ENSG00000180370.10	ENST00000327134.7	protein_coding	protein_coding	protein_coding	protein_coding	2	39	2	2.60296	2.657395	2.71183	0.0267851	0.0170789	0.123349	0.110899
chr5	78237777	78237876	2650574	0	-	0.40404	(0.378,0.408]	chr5	251775	63	INTRON	INTRON	AP3B1	ENSG00000132842.15	ENST00000519295.6:ENST00000255194.11:ENST00000695515.1:ENST00000695454.1:ENST00000695511.1:ENST00000695453.1:ENST00000695455.1:ENST00000695513.1:ENST00000695488.1:ENST00000695450.1:ENST00000695507.1:ENST00000695512.1:ENST00000695510.1:ENST00000695451.1:ENST00000695447.1:ENST00000695505.1:ENST00000519888.6:ENST00000695514.1:ENST00000517940.2:ENST00000517561.2:ENST00000695452.1:ENST00000695449.1:ENST00000695540.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	39	2	2.60296	2.657395	2.71183	0.0267851	0.0170789	0.123349	0.110899
chr12	22632768	22632867	5094818	0	+	0.323232	(0.32,0.35]	chr12	481224	67	INTRON	INTRON	ETNK1	ENSG00000139163.16	ENST00000671733.1:ENST00000335148.8:ENST00000672951.1:ENST00000266517.9:ENST00000538218.2:ENST00000673496.1:ENST00000673406.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	79	2	2.38582	2.657375	2.92893	0.0138529	0.00138	0.0953077	0.0341261
chr20	63918948	63919048	7301198	0	+	0.36	(0.35,0.378]	chr20	743138	1	PRIMIRNA	PRIMIRNA:INTRON	DNAJC5:MIR941-1	ENSG00000101152.11:ENSG00000283206.1	ENST00000360864.9:ENST00000470551.1:ENST00000636396.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:nonsense_mediated_decay:primary_miRNA	3	55	2	2.23043	2.6573700000000002	3.08431	0.0187487	0.0065853	0.117523	0.0701901
chr19	46785454	46785552	7195394	0	-	0.408163	(0.378,0.408]	chr19	729004	5	INTRON	INTRON	SLC1A5	ENSG00000105281.12	ENST00000542575.6:ENST00000412532.6	protein_coding	protein_coding	protein_coding	protein_coding	7	116	2	2.6411	2.657345	2.67359	0.00174684	4.32891e-4	0.0375932	0.0186929
chr1	246909351	246909450	681733	0	-	0.393939	(0.378,0.408]	chr1	80023	12	INTRON	INTRON	AHCTF1	ENSG00000153207.16	ENST00000648844.2:ENST00000326225.3:ENST00000366508.5	protein_coding	protein_coding	protein_coding	protein_coding	16	205	2	1.89951	2.65734	3.41517	0.0013326	3.59461e-5	0.0335308	0.00508574
chr1	24816217	24816317	46774	0	+	0.41	(0.408,0.44]	chr1	5782	16	INTRON	INTRON	CLIC4	ENSG00000169504.15	ENST00000488683.1:ENST00000497755.1:ENST00000374379.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	51	2	2.16746	2.65726	3.14706	0.024436	0.00382411	0.12011	0.0562562
chr7	99036478	99036566	3582050	0	-	0.431818	(0.408,0.44]	chr7	333610	4	INTRON	INTRON	SMURF1	ENSG00000198742.10	ENST00000361368.7:ENST00000361125.1	protein_coding	protein_coding	protein_coding	protein_coding	3	51	2	2.16746	2.65726	3.14706	0.024436	0.00382411	0.12011	0.0562562
chr14	101871344	101871443	5819609	0	+	0.555556	(0.515,0.57]	chr14	551879	141	INTRON	INTRON	PPP2R5C	ENSG00000078304.20	ENST00000694906.1:ENST00000422945.6:ENST00000328724.9:ENST00000350249.7:ENST00000557621.5:ENST00000556307.5:ENST00000553730.5:ENST00000334743.9:ENST00000445439.7:ENST00000557095.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	117	2	2.06367	2.657235	3.2508	0.00266204	4.99309e-5	0.0476185	0.00611391
chr14	101788980	101789080	5818768	0	+	0.33	(0.32,0.35]	chr14	551825	24	INTRON	INTRON	PPP2R5C	ENSG00000078304.20	ENST00000694906.1:ENST00000422945.6:ENST00000554442.5:ENST00000556068.5:ENST00000328724.9:ENST00000554504.1:ENST00000553890.1:ENST00000553554.1:ENST00000556086.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	151	2	2.28621	2.657185	3.02816	0.0044232	7.38256e-5	0.0588897	0.00715612
chr8	42540222	42540318	3942571	0	-	0.447917	(0.44,0.476]	chr8	361337	21	INTRON	INTRON	SLC20A2	ENSG00000168575.10	ENST00000342228.7:ENST00000520179.5:ENST00000518717.1:ENST00000518384.1:ENST00000524237.1:ENST00000523340.1:ENST00000521455.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	14	213	2	2.12291	2.65716	3.19141	8.18714e-4	1.53362e-5	0.0261556	0.00314505
chr3	149083032	149083132	1840965	0	-	0.48	(0.476,0.515]	chr3	185197	66	INTRON	INTRON	HLTF	ENSG00000071794.16	ENST00000310053.10:ENST00000465259.5:ENST00000392912.6:ENST00000494055.5	protein_coding	protein_coding	protein_coding	protein_coding	10	154	2	2.63548	2.6569399999999996	2.6784	5.61257e-4	1.351e-4	0.021915	0.0100397
chr17	1378938	1379038	6699396	0	-	0.29	(0.28,0.32]	chr17	655552	88	INTRON	INTRON	YWHAE	ENSG00000108953.17	ENST00000264335.13:ENST00000571732.5:ENST00000573026.1:ENST00000573196.5:ENST00000575977.1:ENST00000469398.5:ENST00000486241.1:ENST00000489287.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	64	2	2.63379	2.65677	2.67975	0.0252505	0.00503861	0.12011	0.0646039
chr9	132939967	132940063	4368831	0	-	0.302083	(0.28,0.32]	chr9	401848	3	INTRON	INTRON	TSC1	ENSG00000165699.15	ENST00000298552.9:ENST00000644097.1:ENST00000646625.1:ENST00000642627.1:ENST00000643875.1:ENST00000645901.1:ENST00000642811.1:ENST00000642617.1:ENST00000647279.1:ENST00000643583.1:ENST00000644255.1:ENST00000646391.1:ENST00000643072.1:ENST00000647506.1:ENST00000643362.1:ENST00000642344.1:ENST00000642745.1:ENST00000645150.1:ENST00000642646.1:ENST00000647462.1:ENST00000644997.1:ENST00000645129.1:ENST00000403810.6:ENST00000642854.1:ENST00000643691.1:ENST00000475903.6:ENST00000645904.1:ENST00000490179.3:ENST00000646440.1:ENST00000642249.1:ENST00000646788.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	64	2	2.63379	2.65677	2.67975	0.0252505	0.00503861	0.12011	0.0646039
chr1	43908580	43908680	88125	0	+	0.46	(0.44,0.476]	chr1	11765	74	INTRON	INTRON	ST3GAL3	ENSG00000126091.21	ENST00000643597.1:ENST00000372372.7:ENST00000545417.5:ENST00000330208.6:ENST00000335430.10:ENST00000361400.9:ENST00000347631.8:ENST00000642331.1:ENST00000647237.1:ENST00000643252.1:ENST00000372374.7:ENST00000361392.9:ENST00000533997.6:ENST00000353126.8:ENST00000645640.1:ENST00000642934.1:ENST00000643283.1:ENST00000351035.8:ENST00000642949.1:ENST00000489897.6:ENST00000646971.1:ENST00000645142.1:ENST00000645705.1:ENST00000530154.5:ENST00000646027.1:ENST00000646069.1:ENST00000642504.1:ENST00000647148.1:ENST00000262915.8:ENST00000647482.1:ENST00000645394.1:ENST00000647128.1:ENST00000361746.9:ENST00000645034.1:ENST00000645165.1:ENST00000647134.1:ENST00000644195.1:ENST00000642194.1:ENST00000372368.7:ENST00000646686.1:ENST00000372366.6:ENST00000361812.9:ENST00000469715.6:ENST00000372369.5:ENST00000372367.5:ENST00000372365.5:ENST00000528371.5:ENST00000533212.5:ENST00000530581.5:ENST00000531816.1:ENST00000531993.6:ENST00000490541.6:ENST00000372362.6:ENST00000531451.5:ENST00000645117.1:ENST00000533933.6:ENST00000332628.11:ENST00000643813.1:ENST00000644922.1:ENST00000644287.1:ENST00000647503.1:ENST00000461375.2:ENST00000642780.1:ENST00000644645.1:ENST00000645644.1:ENST00000644016.1:ENST00000647299.1:ENST00000644378.1:ENST00000645161.1:ENST00000646032.1:ENST00000643989.1:ENST00000645012.1:ENST00000490502.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	124	2	2.19954	2.65671	3.11388	0.00305209	1.0264e-4	0.0493883	0.00857182
chr19	13841033	13841132	7143330	0	-	0.474747	(0.44,0.476]	chr19	721118	173	EXON_LNCRNA	EXON_LNCRNA	MIR23AHG	ENSG00000267519.6	ENST00000587762.2	lncRNA	lncRNA	lncRNA	lncRNA	5	69	2	1.84134	2.65657	3.4718	0.0175428	0.00136358	0.11319	0.0336321
chr18	46809756	46809855	6965636	0	-	0.323232	(0.32,0.35]	chr18	689435	67	UTR3	UTR3:EXON_MRNA	PIAS2	ENSG00000078043.16	ENST00000585916.6	protein_coding	protein_coding	protein_coding	protein_coding	6	116	2	2.59582	2.65653	2.71724	0.00178944	0.00152305	0.0392749	0.0353936
chrY	11194676	11194776	7929959	0	-	0.32	(0.28,0.32]	chrY	807176	312	INTRON	INTRON	ENSG00000278212	ENSG00000278212.3	ENST00000652671.1:ENST00000651211.2:ENST00000687423.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	6	126	2	2.64424	2.6564699999999997	2.6687	0.00217752	0.00159565	0.0417893	0.0367961
chr3	37280862	37280961	1396132	0	+	0.333333	(0.32,0.35]	chr3	146333	44	INTRON	INTRON	GOLGA4	ENSG00000144674.17	ENST00000435830.6:ENST00000444882.5:ENST00000356847.8:ENST00000450863.6:ENST00000361924.7:ENST00000429018.5:ENST00000431105.1:ENST00000419177.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	80	2	2.22429	2.656465	3.08864	0.0226421	6.64579e-4	0.117557	0.0233423
chr1	207794362	207794458	305342	0	+	0.416667	(0.408,0.44]	chr1	35147	9	UTR3	UTR3:EXON_MRNA:INTRON	CD46	ENSG00000117335.21	ENST00000695779.1:ENST00000695777.1:ENST00000695778.1:ENST00000496723.2:ENST00000695782.1:ENST00000695781.1:ENST00000695780.1:ENST00000636114.2:ENST00000367042.6:ENST00000322875.8:ENST00000322918.9:ENST00000354848.5:ENST00000357714.5:ENST00000358170.6:ENST00000367041.5:ENST00000367047.5:ENST00000695783.1:ENST00000695784.1:ENST00000469535.5:ENST00000360212.6:ENST00000695786.1:ENST00000490278.2:ENST00000462968.2:ENST00000695788.1:ENST00000695790.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	178	2	2.61426	2.65646	2.69866	2.75556e-4	1.59656e-4	0.0147997	0.0115598
chr1	25904313	25904396	404606	0	-	0.313253	(0.28,0.32]	chr1	48557	1	SS5_PROX	SS5_PROX:INTRON	STMN1	ENSG00000117632.23	ENST00000426559.6:ENST00000455785.7:ENST00000399728.5:ENST00000465604.1:ENST00000357865.6:ENST00000374291.5:ENST00000446334.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	109	2	2.1076	2.65645	3.2053	0.0133585	7.42616e-4	0.100772	0.0250442
chr1	8807645	8807744	373687	0	-	0.30303	(0.28,0.32]	chr1	43563	7	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000656437.1:ENST00000659924.1	protein_coding	protein_coding	protein_coding	protein_coding	3	64	2	2.1895	2.65641	3.12332	0.0227063	0.00698537	0.124921	0.0718189
chr2	171145551	171145651	1263946	0	-	0.34	(0.32,0.35]	chr2	133921	273	INTRON	INTRON	TLK1	ENSG00000198586.14	ENST00000431350.7:ENST00000360843.7:ENST00000359766.7:ENST00000521943.5:ENST00000409443.6:ENST00000413010.5:ENST00000470340.1:ENST00000466220.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	81	2	2.1362	2.65641	3.1766200000000002	0.0291083	4.35341e-4	0.128029	0.0187673
chr1	167542601	167542701	576928	0	-	0.43	(0.408,0.44]	chr1	69950	3	SS3_PROX	SS3_PROX:INTRON	CREG1	ENSG00000143162.9	ENST00000466652.2:ENST00000370509.5	protein_coding	protein_coding	protein_coding	protein_coding	4	68	2	2.40661	2.656305	2.906	0.011475	0.00131817	0.0888882	0.0333932
chr17	64517825	64517924	6662008	0	+	0.373737	(0.35,0.378]	chr17	650211	6	INTRON	INTRON	CEP95	ENSG00000258890.8	ENST00000579860.5:ENST00000580188.1:ENST00000556440.7:ENST00000553956.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	18	308	2	2.41732	2.656235	2.89515	1.28098e-4	3.00893e-5	0.00973742	0.00455811
chr3	185800664	185800764	1886105	0	-	0.44	(0.408,0.44]	chr3	188573	1020	INTRON	INTRON	IGF2BP2	ENSG00000073792.16	ENST00000382199.7:ENST00000346192.7:ENST00000457616.6:ENST00000421047.3:ENST00000461957.5:ENST00000493302.5:ENST00000466476.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	70	2	1.7519	2.6562349999999997	3.56057	0.0239555	9.67143e-4	0.129259	0.0282401
chr1	23331519	23331619	399460	0	-	0.51	(0.476,0.515]	chr1	47865	74	INTRON	INTRON	HNRNPR	ENSG00000125944.21	ENST00000478691.5:ENST00000302271.11:ENST00000374616.7:ENST00000374612.5:ENST00000675048.1:ENST00000606561.5:ENST00000427764.3:ENST00000463552.5:ENST00000470941.5:ENST00000476451.2	protein_coding	protein_coding	protein_coding	protein_coding	13	151	2	1.82862	2.65623	3.48384	0.00260829	1.02503e-4	0.0470772	0.00915589
chr2	61291668	61291767	1128723	0	-	0.333333	(0.32,0.35]	chr2	121324	24	INTRON	INTRON	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000472706.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	90	2	1.99685	2.65609	3.31533	0.00667915	0.00323121	0.0738715	0.0507087
chr1	28508215	28508270	57192	0	+	0.345455	(0.32,0.35]	chr1	7382	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	RCC1:SNHG3	ENSG00000180198.17:ENSG00000242125.3	ENST00000398958.6:ENST00000649185.1:ENST00000413987.1:ENST00000427469.5:ENST00000683442.1:ENST00000447507.1:ENST00000434290.6:ENST00000373833.10:ENST00000437681.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	52	919	2	2.60301	2.655995	2.70898	1.50567e-5	4.27928e-6	0.00311444	0.00138797
chr9	130861764	130861864	4215344	0	+	0.4	(0.378,0.408]	chr9	386442	63	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000318560.6	protein_coding	protein_coding	protein_coding	protein_coding	3	52	2	2.41037	2.655995	2.90162	0.0113157	0.0100185	0.0886121	0.0880217
chr12	67292021	67292121	5160727	0	+	0.51	(0.476,0.515]	chr12	488472	96	INTRON	INTRON	CAND1	ENSG00000111530.13	ENST00000545606.6:ENST00000539434.1:ENST00000540525.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	51	2	2.365	2.6559600000000003	2.94692	0.0128901	0.00794331	0.0926667	0.0797304
chr4	139391478	139391573	2050616	0	+	0.505263	(0.476,0.515]	chr4	203406	2	INTRON	INTRON	NAA15	ENSG00000164134.13	ENST00000515576.1	protein_coding	protein_coding	protein_coding	protein_coding	3	51	2	2.365	2.6559600000000003	2.94692	0.0128901	0.00794331	0.0926667	0.0797304
chr3	42048910	42049010	1404011	0	+	0.49	(0.476,0.515]	chr3	147497	344	INTRON	INTRON	TRAK1	ENSG00000182606.17	ENST00000487159.5:ENST00000672026.1:ENST00000673621.2	protein_coding	protein_coding	protein_coding	protein_coding	3	50	2	2.26034	2.6559299999999997	3.05152	0.0166235	0.0064848	0.110511	0.0699952
chr1	61109071	61109170	127658	0	+	0.282828	(0.28,0.32]	chr1	14770	205	EXON_MRNA	EXON_MRNA:INTRON	NFIA	ENSG00000162599.17	ENST00000371191.5:ENST00000664495.1:ENST00000476646.5:ENST00000407417.7:ENST00000479364.1:ENST00000371189.8:ENST00000670151.1:ENST00000664149.1:ENST00000662015.1:ENST00000403491.8:ENST00000371187.7:ENST00000485903.6:ENST00000371185.6:ENST00000371184.6:ENST00000603233.2:ENST00000496712.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	86	2	2.56765	2.6559150000000002	2.74418	0.00835086	0.00328589	0.0774402	0.0527031
chr2	167882060	167882160	1258622	0	-	0.3	(0.28,0.32]	chr2	133334	117	INTRON	INTRON	B3GALT1-AS1	ENSG00000235335.3	ENST00000430546.2:ENST00000657553.1:ENST00000670221.1:ENST00000436982.2	lncRNA	lncRNA	lncRNA	lncRNA	2	47	2	2.39347	2.655895	2.91832	0.0504457	0.0102484	0.156383	0.089002
chr6	20449070	20449170	2827921	0	+	0.32	(0.28,0.32]	chr6	265583	90	INTRON	INTRON	E2F3	ENSG00000112242.16	ENST00000346618.8:ENST00000535432.2	protein_coding	protein_coding	protein_coding	protein_coding	2	47	2	2.39347	2.655895	2.91832	0.0504457	0.0102484	0.156383	0.089002
chr19	50804366	50804466	7203189	0	-	0.67	(0.57,1]	chr19	730918	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	C19orf48	ENSG00000167747.16	ENST00000641834.2:ENST00000596287.6:ENST00000597705.6:ENST00000693315.1:ENST00000597493.6:ENST00000692421.1:ENST00000593287.5:ENST00000601267.5:ENST00000602125.1	transcribed_unitary_pseudogene	retained_intron	transcribed_unitary_pseudogene	retained_intron:processed_transcript	19	144	2	2.18508	2.65588	3.12668	1.46386e-4	6.50779e-7	0.0110659	4.42976e-4
chr12	48659269	48659368	5319032	0	-	0.434343	(0.408,0.44]	chr12	506325	7	INTRON	INTRON	KANSL2	ENSG00000139620.13	ENST00000420613.7:ENST00000548147.5:ENST00000550347.5:ENST00000546701.5:ENST00000548701.5:ENST00000547087.5:ENST00000549574.5:ENST00000553086.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	113	2	2.45603	2.655875	2.85572	0.00171857	4.26582e-4	0.0374701	0.0184578
chr7	64557163	64557262	3537262	0	-	0.525253	(0.515,0.57]	chr7	329913	124	INTRON	INTRON	ZNF680	ENSG00000173041.12	ENST00000309683.11:ENST00000476563.1:ENST00000447137.2:ENST00000473601.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	52	2	2.22166	2.65584	3.09002	0.00735516	0.00491099	0.0765982	0.0609494
chr5	131560777	131560877	2718425	0	-	0.33	(0.32,0.35]	chr5	255602	122	INTRON	INTRON	RAPGEF6	ENSG00000158987.22	ENST00000509018.6:ENST00000507093.5:ENST00000296859.10:ENST00000627212.2:ENST00000308008.10:ENST00000515170.5:ENST00000510071.5:ENST00000503398.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	44	2	2.23182	2.655785	3.07975	0.068598	0.00554235	0.184298	0.0674105
chr16	29522274	29522374	6470788	0	-	0.48	(0.476,0.515]	chr16	625147	164	INTRON	INTRON	ENSG00000288632	ENSG00000288632.1	ENST00000675579.1	lncRNA	lncRNA	lncRNA	lncRNA	9	136	2	2.25919	2.6557649999999997	3.05234	0.00146715	1.48283e-4	0.0347288	0.0105822
chr19	5705271	5705371	7124555	0	-	0.46	(0.44,0.476]	chr19	717126	1	SS5_PROX	SS5_PROX:INTRON	LONP1	ENSG00000196365.12	ENST00000360614.8:ENST00000587552.5:ENST00000540670.6:ENST00000593119.5:ENST00000585374.5:ENST00000590558.5:ENST00000590729.5:ENST00000590206.1:ENST00000588589.5:ENST00000587365.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	82	2	2.51554	2.65576	2.79598	0.00777207	5.82325e-4	0.0757731	0.0219289
chr7	133037786	133037886	3645446	0	-	0.32	(0.28,0.32]	chr7	338876	14	INTRON	INTRON	CHCHD3	ENSG00000106554.13	ENST00000262570.10:ENST00000448878.6:ENST00000496427.5:ENST00000423635.5:ENST00000481152.2:ENST00000457942.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	47	2	2.57195	2.6557000000000004	2.73945	0.0331711	0.017681	0.133994	0.11319
chr5	168573368	168573468	2770660	0	-	0.29	(0.28,0.32]	chr5	260749	40	INTRON	INTRON	PANK3	ENSG00000120137.7	ENST00000239231.7:ENST00000522176.1	protein_coding	protein_coding	protein_coding	protein_coding	5	108	2	2.29708	2.655665	3.01425	0.0195087	2.70987e-4	0.109483	0.0146168
chr2	110665464	110665563	1206735	0	-	0.383838	(0.378,0.408]	chr2	128694	31	INTRON	INTRON	BUB1	ENSG00000169679.15	ENST00000302759.11:ENST00000535254.6:ENST00000409311.5:ENST00000466333.5:ENST00000666956.1:ENST00000465029.5:ENST00000477481.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	11	177	2	2.15622	2.655655	3.15509	0.0013108	5.24475e-5	0.0333932	0.00631446
chr16	89562532	89562620	6420898	0	+	0.306818	(0.28,0.32]	chr16	616321	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPL13	ENSG00000167526.14	ENST00000563749.1:ENST00000484610.5:ENST00000567815.5:ENST00000563270.5:ENST00000311528.10:ENST00000562879.5:ENST00000452368.7:ENST00000393099.3:ENST00000399461.8:ENST00000570149.1:ENST00000472354.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	203	2	2.4732	2.65563	2.83806	9.5626e-4	2.56557e-4	0.0282401	0.0142614
chr22	21849528	21849628	7561205	0	-	0.36	(0.35,0.378]	chr22	773388	413	INTRON	INTRON	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	7	124	2	2.53498	2.655615	2.77625	0.00138346	7.04769e-4	0.0338784	0.0241881
chr16	8815204	8815304	6284839	0	+	0.44	(0.408,0.44]	chr16	601851	17	INTRON	INTRON	PMM2	ENSG00000140650.13	ENST00000566983.5:ENST00000683435.1:ENST00000683094.1:ENST00000566604.5:ENST00000570134.5:ENST00000268261.9:ENST00000683274.1:ENST00000682393.1:ENST00000566540.5:ENST00000562318.5:ENST00000570076.5:ENST00000569958.5:ENST00000565221.5:ENST00000567697.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	136	2	2.27926	2.65547	3.03168	9.96556e-4	2.56148e-4	0.0290732	0.0148345
chr2	61516258	61516356	1130999	0	-	0.428571	(0.408,0.44]	chr2	121606	14	INTRON	INTRON	XPO1	ENSG00000082898.19	ENST00000676553.1:ENST00000677556.1:ENST00000677814.1:ENST00000676771.1:ENST00000677803.1:ENST00000677239.1:ENST00000678790.1:ENST00000677928.1:ENST00000678182.1:ENST00000677150.1:ENST00000678172.1:ENST00000678360.1:ENST00000678081.1:ENST00000676889.1:ENST00000676783.1:ENST00000679035.1:ENST00000677422.1:ENST00000677417.1:ENST00000677813.1:ENST00000676999.1:ENST00000676667.1:ENST00000678263.1:ENST00000678877.1:ENST00000677933.1:ENST00000680228.1:ENST00000677289.1:ENST00000677190.1:ENST00000401558.7:ENST00000428210.5:ENST00000677290.1:ENST00000677850.1:ENST00000451765.6:ENST00000676789.1:ENST00000678741.1:ENST00000404992.6:ENST00000406957.5:ENST00000443240.5:ENST00000476585.5:ENST00000468259.1:ENST00000420673.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	18	235	2	2.05784	2.65543	3.25302	4.39524e-4	2.61561e-5	0.0189211	0.00423176
chr17	36562469	36562569	6602034	0	+	0.26	[0,0.28]	chr17	642565	12	INTRON	INTRON	GGNBP2	ENSG00000278311.5	ENST00000613102.5:ENST00000617860.4:ENST00000618837.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	72	2	2.45042	2.6552499999999997	2.86008	0.0177015	0.010819	0.105304	0.0920575
chr1	23336765	23336862	399514	0	-	0.298969	(0.28,0.32]	chr1	47871	28	INTRON	INTRON	HNRNPR	ENSG00000125944.21	ENST00000478691.5:ENST00000302271.11:ENST00000374616.7:ENST00000374612.5:ENST00000675048.1:ENST00000606561.5:ENST00000427764.3:ENST00000463552.5:ENST00000476451.2	protein_coding	protein_coding	protein_coding	protein_coding	5	108	2	2.14534	2.65522	3.1651	0.0117054	8.79973e-4	0.0962115	0.0272129
chr4	151002511	151002611	2271644	0	-	0.41	(0.408,0.44]	chr4	220921	731	INTRON	INTRON	LRBA	ENSG00000198589.14	ENST00000357115.9:ENST00000651943.2:ENST00000510413.5:ENST00000651035.1:ENST00000507224.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	80	2	2.20396	2.655185	3.10641	0.00555646	0.00235889	0.0648867	0.0445848
chr1	207674811	207674910	304245	0	+	0.343434	(0.32,0.35]	chr1	34995	49	INTRON	INTRON	CR1L	ENSG00000197721.17	ENST00000531844.5:ENST00000508064.7:ENST00000430248.5:ENST00000530905.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	44	2	2.56618	2.655165	2.74415	0.0274185	0.0198267	0.136498	0.109608
chr6	157208085	157208182	3011513	0	+	0.329897	(0.32,0.35]	chr6	281260	3	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	ARID1B	ENSG00000049618.24	ENST00000346085.10:ENST00000636930.2:ENST00000647938.1:ENST00000350026.10:ENST00000414678.7:ENST00000635849.1:ENST00000637904.1:ENST00000637810.1:ENST00000637015.1:ENST00000637568.1:ENST00000636940.1:ENST00000636227.1:ENST00000636254.1:ENST00000637933.1:ENST00000635928.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	44	2	2.56618	2.655165	2.74415	0.0274185	0.0198267	0.136498	0.109608
chr8	30806708	30806808	3933090	0	-	0.33	(0.32,0.35]	chr8	360326	66	INTRON	INTRON	PPP2CB	ENSG00000104695.13	ENST00000221138.9:ENST00000518564.1:ENST00000518243.5:ENST00000520056.1:ENST00000520500.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	44	2	2.56618	2.655165	2.74415	0.0274185	0.0198267	0.136498	0.109608
chr1	54255685	54255785	462245	0	-	0.34	(0.32,0.35]	chr1	55746	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	SSBP3	ENSG00000157216.16	ENST00000610401.5:ENST00000357475.9:ENST00000371319.8:ENST00000417664.7:ENST00000533946.6:ENST00000326956.12:ENST00000371320.8:ENST00000426150.5:ENST00000420121.5:ENST00000533209.5:ENST00000525990.1:ENST00000528787.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	70	2	2.14793	2.65515	3.16237	0.0110079	0.00550276	0.0927187	0.0648867
chr7	139235812	139235911	3436628	0	+	0.343434	(0.32,0.35]	chr7	320189	35	INTRON	INTRON	UBN2	ENSG00000157741.15	ENST00000486663.5:ENST00000473989.8	protein_coding	protein_coding	protein_coding	protein_coding	4	70	2	2.14793	2.65515	3.16237	0.0110079	0.00550276	0.0927187	0.0648867
chr21	46204537	46204637	7470620	0	-	0.37	(0.35,0.378]	chr21	761464	79	INTRON	INTRON	LSS	ENSG00000160285.15	ENST00000356396.8:ENST00000397728.8:ENST00000457828.6:ENST00000522411.5	protein_coding	protein_coding	protein_coding	protein_coding	30	498	2	2.57727	2.65509	2.73291	6.06341e-5	3.71481e-6	0.0068416	0.00126242
chr1	235116476	235116574	661710	0	-	0.5	(0.476,0.515]	chr1	78322	22	INTRON	INTRON	TOMM20	ENSG00000173726.11	ENST00000366607.5:ENST00000467767.5:ENST00000473132.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	67	2	2.54157	2.6550599999999998	2.76855	0.00697457	0.00244302	0.0718189	0.0456956
chr21	10341167	10341262	7427433	0	-	0.431579	(0.408,0.44]	chr21	757681	3	INTRON	INTRON	ENSG00000277693	ENSG00000277693.2	ENST00000622592.1:ENST00000616952.1:ENST00000667012.1	lncRNA	lncRNA	lncRNA	lncRNA	7	86	2	1.51451	2.654925	3.79534	0.0313913	2.17043e-4	0.13151	0.0129235
chr1	244450934	244451034	672835	0	-	0.37	(0.35,0.378]	chr1	79580	128	INTRON	INTRON	ADSS2	ENSG00000035687.10	ENST00000366535.4	protein_coding	protein_coding	protein_coding	protein_coding	6	102	2	2.57806	2.6548499999999997	2.73164	0.00387645	7.61742e-4	0.0543578	0.0253498
chr4	39763089	39763188	1953644	0	+	0.474747	(0.44,0.476]	chr4	195650	19	INTRON	INTRON	UBE2K	ENSG00000078140.14	ENST00000510934.5:ENST00000261427.10:ENST00000438068.6:ENST00000513231.5:ENST00000503368.5:ENST00000445950.2:ENST00000510719.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	50	2	2.39003	2.6547650000000003	2.9195	0.0106488	0.0102021	0.0915714	0.0850389
chr14	30876977	30877071	5676259	0	+	0.425532	(0.408,0.44]	chr14	540778	7	INTRON	INTRON	COCH	ENSG00000100473.18	ENST00000216361.9:ENST00000555117.2:ENST00000396618.9:ENST00000644874.2:ENST00000553772.5:ENST00000475087.5:ENST00000556908.5:ENST00000555881.5:ENST00000460581.6:ENST00000643575.1:ENST00000643697.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	80	2	1.40381	2.65464	3.90547	0.0521927	2.03612e-4	0.177259	0.0129859
chr14	76323402	76323501	5797233	0	+	0.464646	(0.44,0.476]	chr14	549230	121	INTRON	INTRON	ESRRB	ENSG00000119715.15	ENST00000512784.6	protein_coding	protein_coding	protein_coding	protein_coding	4	68	2	2.29126	2.65454	3.01782	0.0165638	7.8136e-4	0.102621	0.0257169
chr8	22611923	22612022	3714429	0	+	0.454545	(0.44,0.476]	chr8	345003	35	INTRON	INTRON	CCAR2	ENSG00000158941.17	ENST00000308511.9:ENST00000389279.7:ENST00000520861.5	protein_coding	protein_coding	protein_coding	protein_coding	10	155	2	2.07687	2.6544	3.23193	0.00351056	1.46355e-5	0.0525467	0.00286673
chr9	131414820	131414920	4217177	0	+	0.55	(0.515,0.57]	chr9	386720	202	INTRON	INTRON	PRRC2B	ENSG00000288701.1	ENST00000682525.1:ENST00000684596.1:ENST00000683519.1:ENST00000682501.1	protein_coding	protein_coding	protein_coding	protein_coding	5	60	2	1.77795	2.6544	3.53085	0.0222234	6.59951e-4	0.116128	0.0232396
chr6	156966647	156966747	3009057	0	+	0.5	(0.476,0.515]	chr6	281124	229	INTRON	INTRON	ARID1B	ENSG00000049618.24	ENST00000346085.10:ENST00000636930.2:ENST00000647938.1:ENST00000350026.10:ENST00000674298.1:ENST00000674190.1:ENST00000414678.7:ENST00000638000.1:ENST00000319584.11:ENST00000452544.2:ENST00000637887.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	123	2	2.372	2.6543349999999997	2.93667	0.00103712	3.86734e-4	0.0295413	0.0182867
chr4	2899733	2899832	1915600	0	+	0.50505	(0.476,0.515]	chr4	192316	4	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	ADD1	ENSG00000087274.19	ENST00000683351.1:ENST00000398125.5:ENST00000264758.11:ENST00000508684.5:ENST00000513328.6:ENST00000509039.5:ENST00000503455.6:ENST00000355842.7:ENST00000651918.1:ENST00000503169.5:ENST00000398129.5:ENST00000398123.6:ENST00000506157.1:ENST00000514940.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	75	2	2.54395	2.654275	2.7646	0.0162075	8.361e-4	0.101453	0.0263691
chr20	32505486	32505586	7326112	0	-	0.45	(0.44,0.476]	chr20	746100	183	INTRON	INTRON	NOL4L	ENSG00000197183.15	ENST00000621426.7:ENST00000375678.7:ENST00000375677.5:ENST00000201961.6	protein_coding	protein_coding	protein_coding	protein_coding	4	68	2	2.59888	2.6542399999999997	2.7096	0.00487719	0.00376205	0.0640618	0.0539118
chr1	77637662	77637761	493009	0	-	0.292929	(0.28,0.32]	chr1	58300	39	INTRON	INTRON	ZZZ3	ENSG00000036549.13	ENST00000370801.8:ENST00000370798.5:ENST00000433749.5:ENST00000414381.5:ENST00000463166.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	64	2	1.91611	2.654075	3.39204	0.0539102	0.00188405	0.164153	0.0402736
chr17	28605067	28605167	6744698	0	-	0.58	(0.57,1]	chr17	662477	9	UTR3	UTR3:EXON_MRNA	RSKR	ENSG00000167524.16	ENST00000577790.2:ENST00000584196.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	2	21	2	2.52405	2.65407	2.78409	0.0263139	0.0116033	0.133676	0.0889104
chr17	43296166	43296266	6777150	0	-	0.58	(0.57,1]	chr17	667948	58	INTRON	INTRON	CCDC200	ENSG00000236383.9	ENST00000594691.6:ENST00000615433.2	protein_coding	protein_coding	protein_coding	protein_coding	2	21	2	2.52405	2.65407	2.78409	0.0263139	0.0116033	0.133676	0.0889104
chr17	75838762	75838858	6838647	0	-	0.572917	(0.57,1]	chr17	675978	15	INTRON	INTRON	UNC13D	ENSG00000092929.12	ENST00000207549.9:ENST00000412096.6:ENST00000591563.5:ENST00000586147.1:ENST00000587105.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	21	2	2.52405	2.65407	2.78409	0.0263139	0.0116033	0.133676	0.0889104
chr4	2353134	2353233	2099074	0	-	0.646465	(0.57,1]	chr4	207724	98	INTRON	INTRON	ZFYVE28	ENSG00000159733.14	ENST00000290974.7:ENST00000511071.5:ENST00000515312.5:ENST00000515169.5:ENST00000509171.5:ENST00000503000.1:ENST00000508184.5:ENST00000504743.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	21	2	2.52405	2.65407	2.78409	0.0263139	0.0116033	0.133676	0.0889104
chrX	38802926	38803025	7643723	0	+	0.575758	(0.57,1]	chrX	782155	16	UTR5	UTR5:EXON_MRNA:INTRON	MID1IP1	ENSG00000165175.17	ENST00000457894.5:ENST00000378474.3:ENST00000336949.7:ENST00000614558.3	protein_coding	protein_coding	protein_coding	protein_coding	2	21	2	2.52405	2.65407	2.78409	0.0263139	0.0116033	0.133676	0.0889104
chr8	129566126	129566226	4060948	0	-	0.47	(0.44,0.476]	chr8	369672	90	INTRON	INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1:ENST00000676273.1:ENST00000667643.1:ENST00000668791.1:ENST00000663716.1:ENST00000663572.1:ENST00000676148.1:ENST00000667962.1:ENST00000674877.1:ENST00000675316.1:ENST00000674656.1:ENST00000446592.7:ENST00000667341.1:ENST00000675186.1:ENST00000652971.1:ENST00000661447.1:ENST00000674863.1:ENST00000675498.1:ENST00000675527.1:ENST00000676108.1:ENST00000657647.1:ENST00000675589.1:ENST00000675913.1:ENST00000675109.1:ENST00000671632.1:ENST00000671311.1:ENST00000676099.1:ENST00000660652.1:ENST00000675522.1:ENST00000675044.1:ENST00000675435.1:ENST00000674639.1:ENST00000676069.1:ENST00000675532.1:ENST00000674762.1:ENST00000523151.6:ENST00000675948.1:ENST00000665364.1:ENST00000657251.1:ENST00000675166.1:ENST00000674883.1:ENST00000675867.1:ENST00000674580.1:ENST00000675393.1:ENST00000520048.1:ENST00000674906.1:ENST00000676030.1:ENST00000670588.1:ENST00000675072.1:ENST00000664936.1:ENST00000652914.1:ENST00000657069.1:ENST00000674882.1	lncRNA	lncRNA	lncRNA	lncRNA	9	139	2	2.37109	2.654065	2.93704	8.72523e-4	2.76819e-4	0.0270796	0.0148174
chr19	11116623	11116712	7017105	0	+	0.595506	(0.57,1]	chr19	697479	4	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	LDLR	ENSG00000130164.14	ENST00000557933.5:ENST00000558518.6:ENST00000545707.5:ENST00000535915.5:ENST00000455727.6:ENST00000558013.5:ENST00000252444.9:ENST00000559340.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	50	2	1.95484	2.65406	3.35328	0.0113205	8.52328e-5	0.0948452	0.00825602
chr1	182391306	182391406	599066	0	-	0.7	(0.57,1]	chr1	71420	2	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GLUL	ENSG00000135821.19	ENST00000331872.11:ENST00000642379.1:ENST00000311223.9:ENST00000417584.6:ENST00000339526.8:ENST00000463851.6:ENST00000484996.5:ENST00000489818.5:ENST00000480604.5:ENST00000462444.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	60	2	2.161	2.65402	3.14704	0.00462668	4.92991e-5	0.062717	0.00608708
chr1	6650569	6650658	368546	0	-	0.494382	(0.476,0.515]	chr1	43318	1	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	DNAJC11	ENSG00000007923.17	ENST00000451196.5:ENST00000377577.10:ENST00000690452.1:ENST00000685129.1:ENST00000472414.2:ENST00000688524.1:ENST00000686243.1:ENST00000690062.1:ENST00000689474.1:ENST00000294401.11:ENST00000426784.1:ENST00000473993.5:ENST00000685485.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	52	2	1.72558	2.6540049999999997	3.58243	0.0767648	6.18479e-4	0.196164	0.0223951
chr9	112240065	112240165	4317018	0	-	0.39	(0.378,0.408]	chr9	397040	48	INTRON	INTRON	PTBP3	ENSG00000119314.16	ENST00000334318.10:ENST00000458258.5:ENST00000374257.6:ENST00000374255.6:ENST00000343327.6	protein_coding	protein_coding	protein_coding	protein_coding	2	40	2	2.13703	2.65396	3.17089	0.0797592	0.00357279	0.19979	0.0548435
chr12	132820299	132820399	5450135	0	-	0.44	(0.408,0.44]	chr12	522103	31	INTRON	INTRON	GOLGA3	ENSG00000090615.16	ENST00000204726.9:ENST00000450791.8:ENST00000688114.1:ENST00000691696.1:ENST00000691636.1:ENST00000690897.1:ENST00000456883.7:ENST00000545875.4:ENST00000688251.1:ENST00000692951.1:ENST00000686751.1:ENST00000685580.1:ENST00000687165.1:ENST00000692384.1:ENST00000685120.1:ENST00000689813.1:ENST00000693112.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	104	2	2.38723	2.6537800000000002	2.92033	0.00162151	9.47391e-4	0.0367655	0.0282007
chr3	186931894	186931993	1586186	0	+	0.454545	(0.44,0.476]	chr3	164314	1	INTRON	INTRON	ST6GAL1	ENSG00000073849.16	ENST00000676786.1:ENST00000463542.1:ENST00000169298.8:ENST00000457772.6:ENST00000455441.5:ENST00000427315.5:ENST00000677292.1:ENST00000468614.1:ENST00000458216.5:ENST00000430309.5:ENST00000417392.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	111	2	2.6358	2.653745	2.67169	0.00140924	5.12141e-4	0.0340865	0.0203407
chr10	22656721	22656820	4579921	0	-	0.515152	(0.476,0.515]	chr10	422028	101	INTRON	INTRON	PIP4K2A	ENSG00000150867.14	ENST00000376573.9:ENST00000545335.5:ENST00000605011.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	111	2	2.20678	2.653735	3.10069	0.00484957	1.12565e-4	0.0605773	0.0090528
chr2	61403910	61404010	1129882	0	-	0.49	(0.476,0.515]	chr2	121485	83	INTRON	INTRON	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000453133.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	111	2	2.20678	2.653735	3.10069	0.00484957	1.12565e-4	0.0605773	0.0090528
chr3	47680222	47680293	1684043	0	-	0.352113	(0.35,0.378]	chr3	172036	1	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	SMARCC1	ENSG00000173473.11	ENST00000254480.10:ENST00000425518.5:ENST00000462198.5:ENST00000485737.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	91	2	1.6344	2.65373	3.67306	0.0189573	7.05001e-4	0.118501	0.024224
chr7	152168589	152168689	3678560	0	-	0.39	(0.378,0.408]	chr7	341438	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	KMT2C	ENSG00000055609.21	ENST00000360104.8:ENST00000262189.11:ENST00000680877.1:ENST00000679560.1:ENST00000683120.1:ENST00000679393.1:ENST00000683200.1:ENST00000684261.1:ENST00000682283.1:ENST00000473186.5:ENST00000679882.1:ENST00000683397.1:ENST00000684307.1:ENST00000683625.1:ENST00000684398.1:ENST00000683670.1:ENST00000680969.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	64	2	1.58349	2.65373	3.72397	0.0653091	3.23378e-4	0.180158	0.0159645
chr16	594819	594919	6272754	0	+	0.47	(0.44,0.476]	chr16	598723	40	INTRON	INTRON	RAB40C	ENSG00000197562.10	ENST00000535977.5:ENST00000569575.5:ENST00000539661.5:ENST00000566290.5:ENST00000248139.8:ENST00000568586.5:ENST00000538492.5:ENST00000565511.5:ENST00000509637.6:ENST00000563109.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	50	2	2.44514	2.6537249999999997	2.86231	0.012214	0.0087381	0.0910127	0.0845538
chr6	35343977	35344077	2851991	0	+	0.46	(0.44,0.476]	chr6	269484	9	INTRON	INTRON	PPARD	ENSG00000112033.14	ENST00000418635.6:ENST00000448077.6:ENST00000360694.8:ENST00000311565.4:ENST00000337400.6	protein_coding	protein_coding	protein_coding	protein_coding	3	50	2	2.44514	2.6537249999999997	2.86231	0.012214	0.0087381	0.0910127	0.0845538
chr7	158642343	158642439	3688134	0	-	0.447917	(0.44,0.476]	chr7	342113	4	INTRON	INTRON	NCAPG2	ENSG00000146918.20	ENST00000356309.8:ENST00000432615.5:ENST00000409423.5:ENST00000441982.5:ENST00000467785.5:ENST00000409339.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	50	2	2.44514	2.6537249999999997	2.86231	0.012214	0.0087381	0.0910127	0.0845538
chr2	47420602	47420702	773705	0	+	0.41	(0.408,0.44]	chr2	87267	38	INTRON	INTRON	MSH2	ENSG00000095002.15	ENST00000543555.6:ENST00000644092.1:ENST00000645339.1:ENST00000646415.1:ENST00000645506.1:ENST00000406134.5:ENST00000233146.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	82	2	2.08486	2.65372	3.2225799999999998	0.0145898	2.79412e-4	0.0981689	0.0148832
chr3	42630773	42630872	1406283	0	+	0.323232	(0.32,0.35]	chr3	147682	3	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NKTR	ENSG00000114857.19	ENST00000468735.6:ENST00000429888.5:ENST00000232978.13:ENST00000465584.5:ENST00000466553.1:ENST00000498730.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	19	340	2	2.59196	2.653625	2.71529	1.10616e-4	4.00944e-5	0.00945003	0.00513517
chr3	196486898	196486998	1899852	0	-	0.6	(0.57,1]	chr3	190249	1	SS5_PROX	SS5_PROX:INTRON	RNF168	ENSG00000163961.4	ENST00000318037.3:ENST00000437070.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	93	2	2.56611	2.65362	2.74113	1.93623e-4	3.63321e-5	0.0127226	0.00482856
chr1	35837486	35837585	70289	0	+	0.474747	(0.44,0.476]	chr1	8994	11	INTRON	INTRON	AGO4	ENSG00000134698.11	ENST00000373210.4	protein_coding	protein_coding	protein_coding	protein_coding	3	50	2	2.33272	2.6536150000000003	2.97451	0.0129984	0.00853825	0.0991656	0.0780043
chr4	119476833	119476933	2026572	0	+	0.46	(0.44,0.476]	chr4	201583	135	INTRON	INTRON	SEPTIN7P14	ENSG00000245958.7	ENST00000686002.1:ENST00000689183.1:ENST00000688315.1:ENST00000688480.1:ENST00000688857.1:ENST00000686202.1:ENST00000693650.1:ENST00000692945.1:ENST00000502760.2:ENST00000508519.6:ENST00000510011.6:ENST00000693497.1:ENST00000685974.1:ENST00000692409.1:ENST00000692642.1:ENST00000690731.1:ENST00000686925.1:ENST00000685525.1:ENST00000685769.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	3	50	2	2.33272	2.6536150000000003	2.97451	0.0129984	0.00853825	0.0991656	0.0780043
chr1	52847669	52847769	104955	0	+	0.53	(0.515,0.57]	chr1	13720	43	INTRON	INTRON	ZYG11A	ENSG00000203995.10	ENST00000371532.5:ENST00000612017.4:ENST00000371528.2	protein_coding	protein_coding	protein_coding	protein_coding	7	95	2	2.38208	2.65357	2.92506	0.00191752	2.50659e-4	0.0395751	0.0140705
chr6	10904442	10904539	2811924	0	+	0.298969	(0.28,0.32]	chr6	264578	11	INTRON	INTRON	SYCP2L	ENSG00000153157.13	ENST00000341041.8:ENST00000283141.11:ENST00000543878.5:ENST00000487561.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	65	2	2.33381	2.65357	2.97333	0.0174951	0.00857834	0.104863	0.083729
chr8	129522377	129522477	4060506	0	-	0.32	(0.28,0.32]	chr8	369648	118	INTRON	INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1:ENST00000676273.1:ENST00000667643.1:ENST00000668791.1:ENST00000663716.1:ENST00000663572.1:ENST00000676148.1:ENST00000667962.1:ENST00000674877.1:ENST00000675316.1:ENST00000674656.1:ENST00000446592.7:ENST00000667341.1:ENST00000675186.1:ENST00000652971.1:ENST00000661447.1:ENST00000674863.1:ENST00000675498.1:ENST00000675527.1:ENST00000676108.1:ENST00000657647.1:ENST00000675589.1:ENST00000675913.1:ENST00000675109.1:ENST00000671632.1:ENST00000671311.1:ENST00000676099.1:ENST00000660652.1:ENST00000675522.1:ENST00000675183.1:ENST00000658861.1:ENST00000663991.1:ENST00000675044.1:ENST00000675435.1:ENST00000674639.1:ENST00000676069.1:ENST00000675532.1:ENST00000674762.1:ENST00000523151.6:ENST00000675948.1:ENST00000665364.1:ENST00000657251.1:ENST00000675166.1:ENST00000674883.1:ENST00000675867.1:ENST00000674580.1:ENST00000675393.1:ENST00000520048.1:ENST00000674906.1:ENST00000676030.1:ENST00000670588.1:ENST00000675072.1:ENST00000664936.1:ENST00000652914.1:ENST00000657069.1	lncRNA	lncRNA	lncRNA	lncRNA	3	65	2	2.33381	2.65357	2.97333	0.0174951	0.00857834	0.104863	0.083729
chr22	20059880	20059979	7478141	0	+	0.30303	(0.28,0.32]	chr22	762668	35	INTRON	INTRON	TANGO2	ENSG00000183597.16	ENST00000401886.5:ENST00000420290.6:ENST00000432883.5:ENST00000434570.6:ENST00000447208.6:ENST00000456048.5:ENST00000411907.5:ENST00000398042.6:ENST00000399807.7:ENST00000450664.5:ENST00000450019.5:ENST00000327374.9:ENST00000430807.5:ENST00000401833.5:ENST00000434168.5:ENST00000444651.5:ENST00000462579.5:ENST00000485715.2:ENST00000490583.5:ENST00000490121.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	187	2	2.34634	2.653495	2.96065	0.00156493	2.7488e-4	0.0365263	0.0151875
chr12	131711738	131711835	5249092	0	+	0.649485	(0.57,1]	chr12	499138	4	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	SFSWAP	ENSG00000061936.10	ENST00000540469.5:ENST00000261674.9:ENST00000538548.5:ENST00000535399.1:ENST00000535236.5:ENST00000541286.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	43	2	2.49621	2.65339	2.81057	0.00209832	0.00169295	0.0413494	0.0381936
chr21	44046497	44046597	7415376	0	+	0.46	(0.44,0.476]	chr21	755795	82	INTRON	INTRON	TRAPPC10	ENSG00000160218.13	ENST00000291574.9:ENST00000380221.7:ENST00000422875.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	127	2	2.50297	2.653385	2.8038	0.00135188	2.03038e-4	0.0336321	0.0124395
chr2	111481755	111481854	1211678	0	-	0.464646	(0.44,0.476]	chr2	128939	13	INTRON	INTRON	MIR4435-2HG	ENSG00000172965.17	ENST00000645030.2:ENST00000642191.1:ENST00000673798.1:ENST00000645051.2:ENST00000673649.1:ENST00000669658.1:ENST00000669917.1:ENST00000661559.1:ENST00000653687.1:ENST00000667670.1:ENST00000609220.2:ENST00000656760.1:ENST00000609902.6:ENST00000666683.1:ENST00000674070.1:ENST00000662335.1:ENST00000664422.1:ENST00000673775.1:ENST00000674092.1:ENST00000673958.1:ENST00000658936.1:ENST00000662635.1:ENST00000666204.1:ENST00000659458.1:ENST00000664443.1:ENST00000670295.1:ENST00000661655.1:ENST00000666390.1:ENST00000659079.1:ENST00000660442.1:ENST00000664009.1:ENST00000439362.6:ENST00000654473.1:ENST00000664999.1:ENST00000673728.1:ENST00000659791.1:ENST00000666144.1:ENST00000659933.1:ENST00000670715.1:ENST00000653568.1:ENST00000643013.1:ENST00000673866.1:ENST00000443467.6:ENST00000669875.1:ENST00000673653.1:ENST00000673988.1:ENST00000661945.1:ENST00000669515.1:ENST00000431385.6:ENST00000656416.1:ENST00000674037.1:ENST00000432818.5:ENST00000674013.1:ENST00000444301.5:ENST00000673964.1:ENST00000673845.1:ENST00000673756.1:ENST00000673960.1:ENST00000673804.1:ENST00000673632.1:ENST00000453478.2:ENST00000673937.1:ENST00000673654.1:ENST00000409569.2:ENST00000674087.1:ENST00000419736.5:ENST00000673840.1:ENST00000674045.1:ENST00000643766.1:ENST00000308604.5:ENST00000604981.5:ENST00000673894.1:ENST00000441075.1:ENST00000673878.1	lncRNA	lncRNA	lncRNA	lncRNA	13	203	2	2.57384	2.653345	2.73285	1.97109e-4	7.27953e-5	0.0128671	0.00711523
chr16	4722550	4722650	6438138	0	-	0.37	(0.35,0.378]	chr16	619996	46	INTRON	INTRON	ANKS3	ENSG00000168096.15	ENST00000450067.6:ENST00000614075.4:ENST00000304283.9:ENST00000592077.5:ENST00000590193.5:ENST00000446014.6:ENST00000591653.5:ENST00000590803.5:ENST00000585773.5:ENST00000590730.5:ENST00000586605.5:ENST00000592421.5:ENST00000592068.5:ENST00000586166.5:ENST00000592698.5:ENST00000586159.5:ENST00000586632.1:ENST00000589065.5:ENST00000593120.5:ENST00000592711.5:ENST00000591281.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	55	2	2.14264	2.653175	3.16371	0.0274795	0.00383956	0.123904	0.0562562
chr21	36324684	36324784	7403732	0	+	0.45	(0.44,0.476]	chr21	754279	40	INTRON	INTRON	MORC3	ENSG00000159256.13	ENST00000492336.5:ENST00000400485.6:ENST00000487909.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	81	2	2.28847	2.653145	3.01782	0.00692113	7.8136e-4	0.0718189	0.0257169
chr14	105266830	105266930	5974011	0	-	0.49	(0.476,0.515]	chr14	568040	99	INTRON	INTRON	BRF1	ENSG00000185024.18	ENST00000547530.7:ENST00000379937.6:ENST00000619151.4:ENST00000327359.7:ENST00000440513.7:ENST00000546417.5:ENST00000550692.1:ENST00000548421.2	protein_coding	protein_coding	protein_coding	protein_coding	2	38	2	2.47949	2.65311	2.82673	0.0326974	0.0134403	0.145164	0.0946278
chr16	28729237	28729337	6334097	0	+	0.48	(0.476,0.515]	chr16	606463	16	INTRON	INTRON	EIF3C	ENSG00000184110.15	ENST00000566501.5:ENST00000395587.5:ENST00000331666.11:ENST00000564243.5:ENST00000566866.5:ENST00000565932.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	38	2	2.47949	2.65311	2.82673	0.0326974	0.0134403	0.145164	0.0946278
chr22	19833556	19833656	7555415	0	-	0.49	(0.476,0.515]	chr22	772443	118	INTRON	INTRON	GNB1L	ENSG00000185838.14	ENST00000329517.11:ENST00000403325.5:ENST00000405009.5:ENST00000460402.5:ENST00000481086.1:ENST00000453108.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	38	2	2.47949	2.65311	2.82673	0.0326974	0.0134403	0.145164	0.0946278
chr3	155803366	155803458	1843973	0	-	0.48913	(0.476,0.515]	chr3	185512	4	INTRON	INTRON	C3orf33	ENSG00000174928.16	ENST00000340171.7:ENST00000482061.6:ENST00000534941.2:ENST00000465810.1:ENST00000486435.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	38	2	2.47949	2.65311	2.82673	0.0326974	0.0134403	0.145164	0.0946278
chr6	43535802	43535902	3096912	0	-	0.5	(0.476,0.515]	chr6	290015	14	INTRON	INTRON	XPO5	ENSG00000124571.18	ENST00000265351.12:ENST00000398835.7:ENST00000612911.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	38	2	2.47949	2.65311	2.82673	0.0326974	0.0134403	0.145164	0.0946278
chr7	76341328	76341428	3562365	0	-	0.48	(0.476,0.515]	chr7	331942	107	INTRON	INTRON	YWHAG	ENSG00000170027.7	ENST00000307630.5	protein_coding	protein_coding	protein_coding	protein_coding	2	38	2	2.47949	2.65311	2.82673	0.0326974	0.0134403	0.145164	0.0946278
chr11	3696484	3696584	4894132	0	-	0.58	(0.57,1]	chr11	458776	4	SS5_PROX	SS5_PROX:INTRON	NUP98	ENSG00000110713.17	ENST00000359171.8:ENST00000324932.12:ENST00000650171.1:ENST00000355260.7:ENST00000429801.5:ENST00000488828.1:ENST00000529063.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	10	76	2	2.40312	2.6530750000000003	2.9030300000000002	2.31233e-4	1.96936e-4	0.0139514	0.0122531
chr1	11804439	11804532	378934	0	-	0.419355	(0.408,0.44]	chr1	44489	11	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	MTHFR	ENSG00000177000.13	ENST00000376590.9:ENST00000376592.6:ENST00000376585.6:ENST00000641747.1:ENST00000641446.1:ENST00000376486.3:ENST00000641437.1:ENST00000418034.1:ENST00000431243.6:ENST00000642002.1:ENST00000413656.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	84	2	1.74555	2.65306	3.56057	0.0118908	9.67143e-4	0.0962115	0.0282401
chr6	152825784	152825884	3249040	0	-	0.39	(0.378,0.408]	chr6	301915	66	INTRON	INTRON	LINC02840	ENSG00000224893.7	ENST00000666093.1:ENST00000656248.1:ENST00000670640.1:ENST00000657202.1:ENST00000659837.1:ENST00000654424.1:ENST00000456715.5:ENST00000670414.1:ENST00000663653.1:ENST00000671138.1	lncRNA	lncRNA	lncRNA	lncRNA	2	40	2	2.45932	2.652975	2.84663	0.0346754	0.0133954	0.148144	0.0946278
chr20	34386045	34386145	7259335	0	+	0.39	(0.378,0.408]	chr20	737405	162	INTRON	INTRON	ITCH	ENSG00000078747.16	ENST00000486883.5:ENST00000374864.10:ENST00000535650.7:ENST00000670516.1:ENST00000658310.1:ENST00000665484.1:ENST00000664852.1:ENST00000660337.1:ENST00000665428.1:ENST00000654846.1:ENST00000262650.10:ENST00000662871.1:ENST00000665346.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	53	2	2.60296	2.65297	2.70298	0.0267851	0.00325723	0.123349	0.0524329
chr6	7129462	7129562	2798580	0	+	0.56	(0.515,0.57]	chr6	263723	204	INTRON	INTRON	RREB1	ENSG00000124782.21	ENST00000379933.7:ENST00000491191.5:ENST00000471433.5:ENST00000379938.7:ENST00000467782.5:ENST00000349384.10:ENST00000334984.10:ENST00000475946.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	58	2	2.38476	2.652955	2.92115	0.0110593	0.00110258	0.0873897	0.03038
chr3	194412778	194412876	1890423	0	-	0.336735	(0.32,0.35]	chr3	189099	6	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	ATP13A3	ENSG00000133657.17	ENST00000687055.1:ENST00000645538.1:ENST00000645319.2:ENST00000690810.1:ENST00000429136.7:ENST00000645621.1:ENST00000691700.1:ENST00000461660.2:ENST00000685123.1:ENST00000642744.2:ENST00000439040.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	70	2	2.22655	2.6529499999999997	3.07935	0.00823133	0.00724137	0.0812969	0.0729826
chr12	122566173	122566272	5240990	0	+	0.494949	(0.476,0.515]	chr12	497679	31	INTRON	INTRON	KNTC1	ENSG00000184445.12	ENST00000450485.6:ENST00000333479.12	protein_coding	protein_coding	protein_coding	protein_coding	6	93	2	2.10798	2.652895	3.19781	0.00628634	4.3655e-4	0.0722266	0.0191798
chr6	26910350	26910450	3071808	0	-	0.35	(0.32,0.35]	chr6	285551	208	INTRON	INTRON	GUSBP2	ENSG00000241549.8	ENST00000479900.5:ENST00000463434.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	4	70	2	2.06478	2.652825	3.24087	0.0147778	0.00420518	0.106702	0.0572185
chrX	136870617	136870717	7897579	0	-	0.54	(0.515,0.57]	chrX	804142	2	SS3_PROX	SS3_PROX:INTRON	RBMX	ENSG00000147274.14	ENST00000561733.5:ENST00000431446.7:ENST00000496459.2:ENST00000568578.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	53	2	2.11384	2.65281	3.19178	0.0118599	0.00289534	0.0899583	0.0494641
chr1	522658	522758	355791	0	-	0.39	(0.378,0.408]	chr1	41021	4	SS5_PROX	SS5_PROX:INTRON	ENSG00000237094	ENSG00000237094.12	ENST00000642124.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	4	63	2	1.94559	2.652785	3.35998	0.0211434	0.00230615	0.122929	0.0428247
chr1	155534098	155534197	562609	0	-	0.424242	(0.408,0.44]	chr1	67117	121	INTRON	INTRON	ASH1L	ENSG00000116539.14	ENST00000676814.1:ENST00000392403.8:ENST00000368346.7:ENST00000677213.1:ENST00000678117.1:ENST00000679097.1:ENST00000679333.1:ENST00000679133.1:ENST00000548830.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	165	2	2.01989	2.652775	3.28566	0.00143245	6.60258e-5	0.0347139	0.0071649
chr7	157242686	157242786	3455001	0	+	0.52	(0.515,0.57]	chr7	323002	110	INTRON	INTRON	UBE3C	ENSG00000009335.18	ENST00000348165.10:ENST00000470408.5:ENST00000494532.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	45	2	1.94945	2.65277	3.35609	0.0414068	0.00174131	0.161557	0.0375363
chr16	70425369	70425469	6511328	0	-	0.56	(0.515,0.57]	chr16	630693	24	INTRON	INTRON	ST3GAL2	ENSG00000157350.13	ENST00000342907.3:ENST00000566097.1:ENST00000567586.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	58	2	2.62817	2.65275	2.67733	0.004048	0.00366712	0.0578376	0.0535094
chr5	176388750	176388819	2552148	0	+	0.623188	(0.57,1]	chr5	243645	1	UTR5	UTR5:EXON_MRNA	HIGD2A	ENSG00000146066.3	ENST00000274787.3	protein_coding	protein_coding	protein_coding	protein_coding	4	36	2	2.42282	2.652715	2.88261	0.00879576	0.00118949	0.0790073	0.031662
chr17	46157892	46157991	6784518	0	-	0.363636	(0.35,0.378]	chr17	669232	6	INTRON	INTRON	KANSL1	ENSG00000120071.15	ENST00000574590.6:ENST00000572904.6:ENST00000432791.7:ENST00000575318.6:ENST00000638275.1:ENST00000262419.10:ENST00000648792.1:ENST00000639531.1:ENST00000639150.1:ENST00000639853.1:ENST00000571698.2:ENST00000639375.1:ENST00000638269.1:ENST00000576248.2:ENST00000639356.1:ENST00000574655.6:ENST00000639099.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	11	188	2	2.38509	2.6526899999999998	2.92029	0.00100188	5.216e-5	0.0288997	0.00590253
chr10	119590014	119590111	4705963	0	-	0.278351	[0,0.28]	chr10	434236	14	INTRON	INTRON	TIAL1	ENSG00000151923.18	ENST00000369093.6:ENST00000436547.7:ENST00000489822.5:ENST00000497671.5:ENST00000470781.5:ENST00000462373.1:ENST00000479729.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	98	2	2.51584	2.652625	2.78941	0.0115397	0.00320409	0.0889104	0.0521823
chr1	224387838	224387938	644954	0	-	0.22	[0,0.28]	chr1	76214	28	UTR3	UTR3:EXON_MRNA:INTRON	WDR26	ENSG00000162923.17	ENST00000414423.9:ENST00000678917.1:ENST00000651911.2:ENST00000678879.1:ENST00000480676.2	protein_coding	protein_coding	protein_coding	protein_coding	2	54	2	2.20927	2.65257	3.09587	0.0794763	0.00651565	0.19979	0.0735232
chr2	167928219	167928319	1259085	0	-	0.39	(0.378,0.408]	chr2	133340	271	INTRON	INTRON	B3GALT1-AS1	ENSG00000235335.3	ENST00000430546.2:ENST00000657553.1:ENST00000670221.1:ENST00000436982.2	lncRNA	lncRNA	lncRNA	lncRNA	19	296	2	2.28033	2.652525	3.02472	1.67483e-4	1.66707e-5	0.011205	0.00328025
chr7	106778717	106778814	3376106	0	+	0.443299	(0.44,0.476]	chr7	316134	6	INTRON	INTRON	LINC02577	ENSG00000228742.11	ENST00000650196.1:ENST00000658697.1:ENST00000490162.3:ENST00000602761.2:ENST00000659396.1:ENST00000659665.1:ENST00000655590.1:ENST00000470135.5	lncRNA	lncRNA	lncRNA	lncRNA	5	70	2	1.47433	2.652515	3.8307	0.0595438	1.81621e-4	0.16883600000000001	0.0117212
chr9	137104721	137104820	4222835	0	+	0.606061	(0.57,1]	chr9	387932	32	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	MAN1B1	ENSG00000177239.16	ENST00000682881.1:ENST00000683324.1:ENST00000684138.1:ENST00000683135.1:ENST00000542372.2:ENST00000371587.9:ENST00000684366.1:ENST00000684229.1:ENST00000683355.1:ENST00000682117.1:ENST00000683475.1:ENST00000682425.1:ENST00000684645.1:ENST00000683979.1:ENST00000371589.9:ENST00000535144.6:ENST00000684272.1:ENST00000475449.7:ENST00000684759.1:ENST00000545539.6:ENST00000684144.1:ENST00000683987.1:ENST00000682212.1:ENST00000544448.6:ENST00000684297.1:ENST00000474902.5:ENST00000682964.1:ENST00000535028.6:ENST00000536349.6:ENST00000684336.1:ENST00000540391.5:ENST00000480100.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	36	2	2.56996	2.652475	2.73499	0.00499145	0.00237434	0.0646039	0.0438057
chr2	107705717	107705817	1205606	0	-	0.31	(0.28,0.32]	chr2	128526	20	INTRON	INTRON	LINC01885:ENSG00000286769	ENSG00000237880.2:ENSG00000286769.1	ENST00000654481.1:ENST00000669817.1	lncRNA	lncRNA	lncRNA	lncRNA	7	144	2	2.43316	2.65246	2.87176	0.00186476	9.34433e-4	0.0399675	0.0280498
chr11	5385583	5385683	4897075	0	-	0.21	[0,0.28]	chr11	459187	383	INTRON	INTRON	HBG2:ENSG00000239920:HBE1:OR51B5	ENSG00000196565.15:ENSG00000239920.2:ENSG00000213931.7:ENSG00000167355.8	ENST00000380252.6:ENST00000380259.7:ENST00000292896.3:ENST00000380237.5:ENST00000420726.6:ENST00000420465.6:ENST00000415970.6:ENST00000418729.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:nonsense_mediated_decay:processed_transcript	2	56	2	2.36637	2.6524349999999997	2.9385	0.0500615	0.0142776	0.17488	0.0963703
chr2	44393236	44393336	765648	0	+	0.2	[0,0.28]	chr2	86763	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	CAMKMT	ENSG00000143919.15	ENST00000378494.8:ENST00000402247.5:ENST00000407131.5:ENST00000403853.7:ENST00000454433.5:ENST00000428993.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	56	2	2.36637	2.6524349999999997	2.9385	0.0500615	0.0142776	0.17488	0.0963703
chr21	44776311	44776408	7468468	0	-	0.237113	[0,0.28]	chr21	761149	10	INTRON	INTRON	UBE2G2	ENSG00000184787.19	ENST00000345496.7:ENST00000497630.5:ENST00000477954.5:ENST00000491513.5:ENST00000330942.9:ENST00000478200.1:ENST00000497664.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	200	2	2.20773	2.65233	3.09693	0.002385	5.03402e-4	0.0449918	0.0207704
chr3	5169403	5169503	1354047	0	+	0.32	(0.28,0.32]	chr3	142361	405	INTRON	INTRON	ARL8B	ENSG00000134108.14	ENST00000429403.5:ENST00000256496.8:ENST00000455168.5:ENST00000444332.1:ENST00000419534.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	105	2	2.38601	2.65226	2.91851	0.0130672	0.00129677	0.093385	0.0333764
chr8	129523475	129523575	4060517	0	-	0.22	[0,0.28]	chr8	369648	129	INTRON	INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1:ENST00000676273.1:ENST00000667643.1:ENST00000668791.1:ENST00000663716.1:ENST00000663572.1:ENST00000676148.1:ENST00000667962.1:ENST00000674877.1:ENST00000675316.1:ENST00000674656.1:ENST00000446592.7:ENST00000667341.1:ENST00000675186.1:ENST00000652971.1:ENST00000661447.1:ENST00000674863.1:ENST00000675498.1:ENST00000675527.1:ENST00000676108.1:ENST00000657647.1:ENST00000675589.1:ENST00000675913.1:ENST00000675109.1:ENST00000671632.1:ENST00000671311.1:ENST00000676099.1:ENST00000660652.1:ENST00000675522.1:ENST00000675183.1:ENST00000658861.1:ENST00000663991.1:ENST00000675044.1:ENST00000675435.1:ENST00000674639.1:ENST00000676069.1:ENST00000675532.1:ENST00000674762.1:ENST00000523151.6:ENST00000675948.1:ENST00000665364.1:ENST00000657251.1:ENST00000675166.1:ENST00000674883.1:ENST00000675867.1:ENST00000674580.1:ENST00000675393.1:ENST00000520048.1:ENST00000674906.1:ENST00000676030.1:ENST00000670588.1:ENST00000675072.1:ENST00000664936.1:ENST00000652914.1:ENST00000657069.1	lncRNA	lncRNA	lncRNA	lncRNA	4	88	2	1.85833	2.65222	3.44611	0.0378973	0.00185186	0.141283	0.039946
chr4	126473339	126473439	2235442	0	-	0.3	(0.28,0.32]	chr4	219023	78	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	4	78	2	2.47671	2.6522	2.82769	0.0169391	0.00327955	0.103888	0.0527031
chr22	20512717	20512816	7479398	0	+	0.50505	(0.476,0.515]	chr22	762951	39	INTRON	INTRON	MED15	ENSG00000099917.17	ENST00000445987.5:ENST00000444094.5:ENST00000414658.5:ENST00000486656.5:ENST00000433831.5:ENST00000432052.5:ENST00000292733.11:ENST00000263205.11:ENST00000477824.5:ENST00000406969.5:ENST00000382974.6:ENST00000441501.5:ENST00000438962.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	120	2	1.88674	2.6521049999999997	3.41747	0.00482447	1.45317e-4	0.0639522	0.0110154
chr15	75930561	75930656	6065934	0	+	0.273684	[0,0.28]	chr15	577661	6	UTR3	UTR3:EXON_MRNA:INTRON	FBXO22	ENSG00000167196.14	ENST00000569749.5:ENST00000308275.8:ENST00000569022.1:ENST00000453211.6:ENST00000565036.5:ENST00000561885.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	54	2	2.57033	2.6520849999999996	2.73384	0.0305273	0.0246308	0.143385	0.12011
chr21	8403662	8403762	7366586	0	+	0.25	[0,0.28]	chr21	751814	192	INTRON	INTRON	ENSG00000280441	ENSG00000280441.3	ENST00000623860.3:ENST00000651813.1:ENST00000652379.1:ENST00000651958.1	lncRNA	lncRNA	lncRNA	lncRNA	2	54	2	2.57033	2.6520849999999996	2.73384	0.0305273	0.0246308	0.143385	0.12011
chr3	5178363	5178463	1354145	0	+	0.41	(0.408,0.44]	chr3	142392	3	SS3_PROX	SS3_PROX:INTRON	ARL8B	ENSG00000134108.14	ENST00000256496.8:ENST00000455168.5:ENST00000419534.2:ENST00000468010.1:ENST00000476343.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	113	2	2.45395	2.652025	2.8501	0.00366321	1.55358e-4	0.0535094	0.0106835
chr18	9184311	9184411	6869407	0	+	0.35	(0.32,0.35]	chr18	680568	14	INTRON	INTRON	ANKRD12	ENSG00000101745.17	ENST00000585234.5:ENST00000262126.9:ENST00000540578.6:ENST00000581635.5:ENST00000400020.7:ENST00000581758.1:ENST00000546007.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	59	2	2.22429	2.6520200000000003	3.07975	0.0226421	0.00554235	0.117557	0.0674105
chr19	5967808	5967907	7125506	0	-	0.464646	(0.44,0.476]	chr19	717384	15	INTRON	INTRON	RANBP3	ENSG00000031823.14	ENST00000340578.10:ENST00000439268.6:ENST00000592771.5:ENST00000591092.5:ENST00000034275.12:ENST00000587479.2:ENST00000592621.5:ENST00000590623.5:ENST00000591736.5:ENST00000590953.5:ENST00000588879.5:ENST00000587159.5:ENST00000586117.5:ENST00000589353.5:ENST00000587463.5:ENST00000588010.5:ENST00000591124.5:ENST00000585339.5:ENST00000592133.5:ENST00000591881.5:ENST00000589886.5:ENST00000587263.5:ENST00000587956.5:ENST00000591333.5:ENST00000592266.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	60	2	2.08211	2.652015	3.22192	0.0130715	0.00360821	0.0996047	0.0533855
chr7	74192798	74192895	3332416	0	+	0.505155	(0.476,0.515]	chr7	310058	2	EXON_MRNA	EXON_MRNA:INTRON	EIF4H	ENSG00000106682.16	ENST00000678438.1:ENST00000677998.1:ENST00000495187.2:ENST00000265753.13:ENST00000353999.6:ENST00000677570.1:ENST00000677681.1:ENST00000678815.1:ENST00000679266.1:ENST00000679287.1:ENST00000678341.1:ENST00000679161.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	123	2	2.22708	2.6519	3.07672	0.00263694	1.29125e-4	0.0458452	0.00979735
chr7	119612579	119612679	3627462	0	-	0.31	(0.28,0.32]	chr7	337315	1121	INTRON	INTRON	LINC02476	ENSG00000225546.6	ENST00000660268.1	lncRNA	lncRNA	lncRNA	lncRNA	4	77	2	1.83303	2.6518249999999997	3.47062	0.0370023	0.00137212	0.139194	0.0340241
chr1	153773942	153774039	227370	0	+	0.28866000000000003	(0.28,0.32]	chr1	26155	8	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	INTS3	ENSG00000143624.14	ENST00000318967.7:ENST00000481797.5:ENST00000476843.5:ENST00000368670.5:ENST00000368669.1:ENST00000624515.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	77	2	2.38504	2.6517749999999998	2.91851	0.0130672	0.00475871	0.093385	0.0636201
chr20	64274280	64274378	7302371	0	+	0.295918	(0.28,0.32]	chr20	743406	8	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	PCMTD2	ENSG00000203880.12	ENST00000299468.11:ENST00000369758.8:ENST00000308824.11:ENST00000266078.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	77	2	2.38504	2.6517749999999998	2.91851	0.0130672	0.00475871	0.093385	0.0636201
chr1	230135824	230135924	334765	0	+	0.48	(0.476,0.515]	chr1	38930	439	INTRON	INTRON	GALNT2	ENSG00000143641.10	ENST00000494106.1:ENST00000366672.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	61	2	2.05714	2.65172	3.2463	0.0156961	0.00262374	0.101453	0.0470772
chr22	21508145	21508245	7560172	0	-	0.5	(0.476,0.515]	chr22	773318	157	INTRON	INTRON	PI4KAP2	ENSG00000183506.17	ENST00000450651.5:ENST00000467443.5:ENST00000479693.1:ENST00000476537.1:ENST00000491562.5	transcribed_unitary_pseudogene	retained_intron	transcribed_unitary_pseudogene	retained_intron:processed_transcript	4	61	2	2.05714	2.65172	3.2463	0.0156961	0.00262374	0.101453	0.0470772
chr7	2368780	2368875	3269773	0	+	0.431579	(0.408,0.44]	chr7	303838	14	INTRON	INTRON	EIF3B	ENSG00000106263.19	ENST00000360876.9:ENST00000397011.2:ENST00000466199.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	125	2	2.64759	2.65163	2.65567	0.0016061	2.17278e-4	0.0364977	0.0129235
chr20	5608573	5608671	7312321	0	-	0.357143	(0.35,0.378]	chr20	744619	38	INTRON	INTRON	GPCPD1	ENSG00000125772.14	ENST00000379019.7:ENST00000481690.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	105	2	1.63002	2.65154	3.67306	0.012123	7.05001e-4	0.0963277	0.024224
chr17	27295907	27296005	6580549	0	+	0.571429	(0.57,1]	chr17	639598	11	INTRON	INTRON	WSB1	ENSG00000109046.15	ENST00000581440.5:ENST00000578312.5:ENST00000583742.1:ENST00000467843.6:ENST00000579733.5:ENST00000583193.5:ENST00000262394.7:ENST00000427287.6:ENST00000581185.5:ENST00000584354.1:ENST00000583786.5:ENST00000581089.1:ENST00000348811.6:ENST00000582208.1:ENST00000584114.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	45	2	1.80787	2.65152	3.49517	0.0086124	6.03609e-4	0.0838082	0.0226059
chr16	2978386	2978481	6432860	0	-	0.515789	(0.515,0.57]	chr16	619099	10	INTRON	INTRON	PKMYT1	ENSG00000127564.17	ENST00000431515.6:ENST00000440027.6:ENST00000262300.13:ENST00000574385.5:ENST00000574730.5:ENST00000573944.5:ENST00000576268.1:ENST00000574415.5:ENST00000575632.5:ENST00000572059.1:ENST00000572619.1	protein_coding	protein_coding	protein_coding	protein_coding	7	101	2	2.45375	2.65149	2.84923	0.00273605	1.68834e-4	0.0483437	0.0119215
chr15	57987817	57987917	6186747	0	-	0.45	(0.44,0.476]	chr15	589736	216	INTRON	INTRON	ALDH1A2	ENSG00000128918.15	ENST00000537372.5:ENST00000249750.9:ENST00000347587.7:ENST00000430119.6:ENST00000558231.5:ENST00000559517.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	104	2	1.26906	2.6514550000000003	4.03385	0.0432351	6.14604e-5	0.148082	0.0064891
chr7	139268594	139268694	3436963	0	+	0.45	(0.44,0.476]	chr7	320226	18	INTRON	INTRON	UBN2	ENSG00000157741.15	ENST00000473989.8:ENST00000483726.1	protein_coding	protein_coding	protein_coding	protein_coding	5	81	2	2.32184	2.65142	2.981	0.00609071	9.31193e-4	0.0676501	0.0278746
chr6	38697671	38697771	3090223	0	-	0.35	(0.32,0.35]	chr6	289127	103	INTRON	INTRON	GLO1	ENSG00000124767.7	ENST00000373365.5	protein_coding	protein_coding	protein_coding	protein_coding	3	59	2	2.6321	2.65139	2.67068	0.0268	0.00406276	0.123349	0.0578984
chr8	30803630	30803730	3933059	0	-	0.33	(0.32,0.35]	chr8	360326	35	INTRON	INTRON	PPP2CB	ENSG00000104695.13	ENST00000221138.9:ENST00000518564.1:ENST00000518243.5:ENST00000520056.1:ENST00000520500.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	59	2	2.6321	2.65139	2.67068	0.0268	0.00406276	0.123349	0.0578984
chr3	161224429	161224529	1546222	0	+	0.33	(0.32,0.35]	chr3	160819	1	SS3_PROX	SS3_PROX:INTRON	NMD3	ENSG00000169251.13	ENST00000468606.5:ENST00000460503.5:ENST00000493066.5:ENST00000473909.5:ENST00000472947.5:ENST00000351193.7:ENST00000463518.5:ENST00000476237.5:ENST00000460469.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	58	2	2.4053	2.651365	2.89743	0.0127608	0.0108284	0.0926667	0.0920575
chr6	147680939	147681038	2990805	0	+	0.343434	(0.32,0.35]	chr6	280163	44	INTRON	INTRON	ENSG00000227681	ENSG00000227681.5	ENST00000427015.1:ENST00000432506.5:ENST00000442094.5	lncRNA	lncRNA	lncRNA	lncRNA	3	58	2	2.4053	2.651365	2.89743	0.0127608	0.0108284	0.0926667	0.0920575
chr7	128757583	128757681	3408564	0	+	0.346939	(0.32,0.35]	chr7	318443	25	INTRON	INTRON	CALU	ENSG00000128595.17	ENST00000535011.6:ENST00000542996.6:ENST00000249364.9:ENST00000449187.6:ENST00000479257.5	protein_coding	protein_coding	protein_coding	protein_coding	3	58	2	2.4053	2.651365	2.89743	0.0127608	0.0108284	0.0926667	0.0920575
chr15	52023515	52023612	6029063	0	+	0.381443	(0.378,0.408]	chr15	574417	16	INTRON	INTRON	MAPK6	ENSG00000069956.14	ENST00000560802.1:ENST00000691380.1:ENST00000558063.5:ENST00000560254.1:ENST00000681888.1:ENST00000261845.7:ENST00000680066.1:ENST00000680777.1:ENST00000558100.1:ENST00000680652.1:ENST00000558841.1:ENST00000558891.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	84	2	2.63629	2.65136	2.66643	0.00470023	0.001315	0.0600108	0.0333932
chr2	69377003	69377102	1147208	0	-	0.515152	(0.476,0.515]	chr2	122530	25	INTRON	INTRON	GFPT1	ENSG00000198380.13	ENST00000361060.5:ENST00000357308.9:ENST00000674507.1:ENST00000674438.1:ENST00000494201.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	67	2	2.62236	2.651295	2.68023	0.00517	0.00353671	0.0631506	0.0546236
chr20	47223428	47223525	7348161	0	-	0.474227	(0.44,0.476]	chr20	749241	16	INTRON	INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000467200.6:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4	protein_coding	protein_coding	protein_coding	protein_coding	4	70	2	2.39003	2.651275	2.91252	0.0106488	0.00164027	0.0915714	0.0369207
chr22	47721088	47721188	7540259	0	+	0.29	(0.28,0.32]	chr22	770719	100	INTRON	INTRON	ENSG00000224271	ENSG00000224271.7	ENST00000664761.1:ENST00000651071.1:ENST00000650683.1:ENST00000651536.1:ENST00000652499.1:ENST00000652656.1:ENST00000652072.1:ENST00000651445.1:ENST00000423737.5:ENST00000650660.1:ENST00000651056.1:ENST00000652611.1:ENST00000652399.1:ENST00000652123.1:ENST00000651311.1:ENST00000651458.1:ENST00000652505.1:ENST00000652702.2:ENST00000652334.1:ENST00000652030.2:ENST00000651403.1:ENST00000652228.1:ENST00000651124.1:ENST00000650972.1:ENST00000651985.1:ENST00000651637.1:ENST00000650924.1:ENST00000651003.1:ENST00000652168.1:ENST00000651948.2:ENST00000651293.1:ENST00000651939.1:ENST00000650787.1:ENST00000651517.1:ENST00000651662.1:ENST00000652690.1:ENST00000651638.1:ENST00000670853.1:ENST00000652750.1:ENST00000652080.1:ENST00000651294.1:ENST00000652164.1:ENST00000651538.1:ENST00000650775.1:ENST00000651983.1:ENST00000651033.1:ENST00000651584.1:ENST00000650884.1:ENST00000651270.1	lncRNA	lncRNA	lncRNA	lncRNA	3	63	2	2.42868	2.65125	2.87382	0.014868	0.0105331	0.0989021	0.0908969
chr5	138359082	138359182	2494915	0	+	0.3	(0.28,0.32]	chr5	238471	57	INTRON	INTRON	KDM3B	ENSG00000120733.14	ENST00000314358.10	protein_coding	protein_coding	protein_coding	protein_coding	3	63	2	2.38391	2.65121	2.91851	0.0130672	0.0122525	0.0969406	0.093385
chr7	136181409	136181509	3432068	0	+	0.43	(0.408,0.44]	chr7	319917	36	INTRON	INTRON	ENSG00000232053	ENSG00000232053.7	ENST00000657456.1:ENST00000668062.1:ENST00000668668.1:ENST00000445293.6:ENST00000659747.1:ENST00000668896.1:ENST00000435996.1	lncRNA	lncRNA	lncRNA	lncRNA	4	61	2	2.3494	2.65118	2.95296	0.00929354	0.00462504	0.0817766	0.062717
chr6	35347550	35347650	2852028	0	+	0.33	(0.32,0.35]	chr6	269490	4	SS5_PROX	SS5_PROX:INTRON	PPARD	ENSG00000112033.14	ENST00000418635.6:ENST00000448077.6:ENST00000360694.8:ENST00000311565.4:ENST00000337400.6	protein_coding	protein_coding	protein_coding	protein_coding	4	79	2	2.30731	2.65113	2.99495	0.0176772	0.00102621	0.10525	0.0294094
chr2	61516061	61516159	1130997	0	-	0.44898	(0.44,0.476]	chr2	121606	12	INTRON	INTRON	XPO1	ENSG00000082898.19	ENST00000676553.1:ENST00000677556.1:ENST00000677814.1:ENST00000676771.1:ENST00000677803.1:ENST00000677239.1:ENST00000678790.1:ENST00000677928.1:ENST00000678182.1:ENST00000677150.1:ENST00000678172.1:ENST00000678360.1:ENST00000678081.1:ENST00000676889.1:ENST00000676783.1:ENST00000679035.1:ENST00000677422.1:ENST00000677417.1:ENST00000677813.1:ENST00000676999.1:ENST00000676667.1:ENST00000678263.1:ENST00000678877.1:ENST00000677933.1:ENST00000680228.1:ENST00000677289.1:ENST00000677190.1:ENST00000401558.7:ENST00000428210.5:ENST00000677290.1:ENST00000677850.1:ENST00000451765.6:ENST00000676789.1:ENST00000678741.1:ENST00000404992.6:ENST00000406957.5:ENST00000443240.5:ENST00000476585.5:ENST00000468259.1:ENST00000420673.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	21	322	2	2.27408	2.651115	3.02815	3.49306e-4	1.45172e-6	0.017404	7.22593e-4
chr11	64362601	64362701	4803306	0	+	0.42	(0.408,0.44]	chr11	445820	2	INTRON	INTRON	RPS6KA4	ENSG00000162302.13	ENST00000528057.5:ENST00000334205.9:ENST00000528355.5:ENST00000530504.1:ENST00000532885.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	38	2	2.27698	2.651055	3.02513	0.0583528	0.0059965	0.167723	0.0700606
chr18	57556848	57556948	6980166	0	-	0.42	(0.408,0.44]	chr18	690591	15	INTRON	INTRON	FECH	ENSG00000066926.13	ENST00000262093.11:ENST00000652755.1:ENST00000651787.1:ENST00000382873.8:ENST00000585494.5:ENST00000591977.5:ENST00000682485.1:ENST00000592699.6:ENST00000651812.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	38	2	2.27698	2.651055	3.02513	0.0583528	0.0059965	0.167723	0.0700606
chr20	47561291	47561391	7281591	0	+	0.41	(0.408,0.44]	chr20	740469	589	INTRON	INTRON	NCOA3	ENSG00000124151.19	ENST00000371998.8:ENST00000372004.7:ENST00000371997.3	protein_coding	protein_coding	protein_coding	protein_coding	2	38	2	2.27698	2.651055	3.02513	0.0583528	0.0059965	0.167723	0.0700606
chr3	38210715	38210815	1399002	0	+	0.42	(0.408,0.44]	chr3	146686	115	INTRON	INTRON	OXSR1	ENSG00000172939.9	ENST00000446845.5:ENST00000311806.8:ENST00000426620.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	38	2	2.27698	2.651055	3.02513	0.0583528	0.0059965	0.167723	0.0700606
chr3	138688474	138688574	1830018	0	-	0.43	(0.408,0.44]	chr3	183961	2	SS5_PROX	SS5_PROX:INTRON	PIK3CB	ENSG00000051382.9	ENST00000674063.1:ENST00000289153.6:ENST00000477593.5:ENST00000469284.6:ENST00000544716.5:ENST00000462898.5:ENST00000481749.5:ENST00000493568.5:ENST00000473435.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	38	2	2.27698	2.651055	3.02513	0.0583528	0.0059965	0.167723	0.0700606
chr1	180396415	180396515	594768	0	-	0.3	(0.28,0.32]	chr1	71180	695	INTRON	INTRON	ACBD6	ENSG00000230124.8	ENST00000645415.1:ENST00000642319.1:ENST00000496993.5:ENST00000475338.2:ENST00000367595.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	47	2	2.32871	2.65102	2.97333	0.0581621	0.00857834	0.167723	0.083729
chr21	44941385	44941485	7417473	0	+	0.45	(0.44,0.476]	chr21	756215	8	INTRON	INTRON	SLX9	ENSG00000160256.13	ENST00000397826.7:ENST00000458015.1:ENST00000291634.11	protein_coding	protein_coding	protein_coding	protein_coding	5	83	2	2.56423	2.65102	2.73781	0.00276493	0.00226303	0.04867	0.0425438
chr7	105537941	105538040	3375743	0	+	0.393939	(0.378,0.408]	chr7	316053	8	INTRON	INTRON	RINT1	ENSG00000135249.8	ENST00000467392.5:ENST00000482041.5:ENST00000493041.5:ENST00000257700.7:ENST00000497979.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	173	2	2.07326	2.650905	3.22855	0.00280604	1.59946e-5	0.0470768	0.00301858
chr16	58552119	58552219	6495577	0	-	0.33	(0.32,0.35]	chr16	628521	3	SS3_PROX	SS3_PROX:INTRON	CNOT1	ENSG00000125107.19	ENST00000317147.10:ENST00000569240.5:ENST00000567188.5:ENST00000441024.6:ENST00000569732.1:ENST00000562046.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	63	2	2.30673	2.6508399999999996	2.99495	0.0584434	0.00102621	0.167723	0.0294094
chr1	154238728	154238827	227713	0	+	0.424242	(0.408,0.44]	chr1	26269	12	INTRON	INTRON	UBAP2L	ENSG00000143569.19	ENST00000343815.10:ENST00000271877.11:ENST00000613315.4:ENST00000412596.5:ENST00000368504.5:ENST00000428931.6:ENST00000437652.5:ENST00000361546.6	protein_coding	protein_coding	protein_coding	protein_coding	2	40	2	2.2957	2.650825	3.00595	0.0516458	0.00781452	0.176696	0.0759016
chr17	81889597	81889682	6850226	0	-	0.411765	(0.408,0.44]	chr17	678416	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ALYREF	ENSG00000183684.8	ENST00000505490.3:ENST00000512673.1:ENST00000511412.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	40	2	2.2957	2.650825	3.00595	0.0516458	0.00781452	0.176696	0.0759016
chr19	343875	343975	7109609	0	-	0.41	(0.408,0.44]	chr19	713832	34	INTRON	INTRON	MIER2	ENSG00000105556.12	ENST00000264819.7:ENST00000635755.1:ENST00000586994.7:ENST00000587966.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	61	2	1.93002	2.65082	3.37162	0.022095	0.00208674	0.123903	0.0411801
chr17	62050542	62050642	6810733	0	-	0.29	(0.28,0.32]	chr17	672946	146	INTRON	INTRON	MED13	ENSG00000108510.10	ENST00000397786.7	protein_coding	protein_coding	protein_coding	protein_coding	5	103	2	2.64424	2.650785	2.65733	0.0061571	0.00159565	0.0676501	0.0367961
chr10	74427173	74427273	4458535	0	+	0.43	(0.408,0.44]	chr10	411580	282	INTRON	INTRON	ADK	ENSG00000156110.15	ENST00000672429.1:ENST00000539909.6:ENST00000286621.7:ENST00000673352.1:ENST00000673310.1:ENST00000672920.1:ENST00000672394.1:ENST00000372734.5:ENST00000673027.1:ENST00000541550.6:ENST00000672604.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	78	2	1.54273	2.650775	3.75882	0.0337312	4.04678e-4	0.146709	0.0185763
chr19	57778053	57778151	7105294	0	+	0.428571	(0.408,0.44]	chr19	713159	10	INTRON	INTRON	ZNF586	ENSG00000083828.16	ENST00000651718.1:ENST00000391702.3:ENST00000598885.5:ENST00000598183.1:ENST00000599802.1:ENST00000396154.7:ENST00000396150.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	51	2	2.14732	2.6507300000000003	3.15414	0.0237354	0.00469847	0.129075	0.0600108
chr8	67100075	67100173	3776993	0	+	0.285714	(0.28,0.32]	chr8	350299	10	EXON_MRNA	EXON_MRNA:INTRON	CSPP1	ENSG00000104218.16	ENST00000676113.1:ENST00000675306.2:ENST00000678156.1:ENST00000262210.11:ENST00000678017.1:ENST00000675869.1:ENST00000678542.1:ENST00000677619.1:ENST00000676605.1:ENST00000676471.1:ENST00000677256.1:ENST00000676847.1:ENST00000677009.1:ENST00000675820.1:ENST00000676317.1:ENST00000677592.1:ENST00000676573.1:ENST00000678318.1:ENST00000677473.1:ENST00000674993.1:ENST00000678553.1:ENST00000678204.1:ENST00000679226.1:ENST00000676882.1:ENST00000675955.1:ENST00000678728.1:ENST00000677430.1:ENST00000677455.1:ENST00000678616.1:ENST00000678362.1:ENST00000679112.1:ENST00000678645.1:ENST00000676567.1:ENST00000677845.1:ENST00000519163.6:ENST00000676858.1:ENST00000678747.1:ENST00000678821.1:ENST00000678744.1:ENST00000519668.1:ENST00000676697.1:ENST00000678216.1:ENST00000677855.1:ENST00000676695.1:ENST00000677836.1:ENST00000677070.1:ENST00000678444.1:ENST00000676534.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	47	2	2.62686	2.650695	2.67453	0.0289217	0.021289	0.1274	0.123318
chr17	45048564	45048664	6782077	0	-	0.5	(0.476,0.515]	chr17	669013	35	INTRON	INTRON	DCAKD	ENSG00000172992.13	ENST00000342350.10:ENST00000452796.7:ENST00000651974.1:ENST00000310604.9:ENST00000688601.1:ENST00000614054.5:ENST00000687739.1:ENST00000688897.1:ENST00000687955.1:ENST00000688577.1:ENST00000588499.6:ENST00000684999.1:ENST00000692180.1:ENST00000693065.1:ENST00000691739.1:ENST00000687525.1:ENST00000686754.1:ENST00000687463.1:ENST00000685712.1:ENST00000592902.6:ENST00000685986.1:ENST00000692907.1:ENST00000689764.1:ENST00000687414.1:ENST00000693328.1:ENST00000688568.1:ENST00000588295.2:ENST00000593094.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	50	2	2.53671	2.650655	2.7646	0.0162075	0.00624027	0.101453	0.0718843
chr21	39308851	39308950	7465495	0	-	0.494949	(0.476,0.515]	chr21	760568	99	INTRON	INTRON	BRWD1	ENSG00000185658.14	ENST00000333229.6:ENST00000342449.8:ENST00000380800.7:ENST00000341322.4:ENST00000470108.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	50	2	2.53671	2.650655	2.7646	0.0162075	0.00624027	0.101453	0.0718843
chr3	53327736	53327835	1704893	0	-	0.393939	(0.378,0.408]	chr3	175650	79	INTRON	INTRON	DCP1A	ENSG00000272886.6	ENST00000610213.6:ENST00000294241.10:ENST00000560624.5:ENST00000559748.5:ENST00000560076.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	39	2	2.30961	2.650655	2.9917	0.055088	0.0068789	0.165463	0.0749442
chrX	123606429	123606528	7877741	0	-	0.494949	(0.476,0.515]	chrX	802391	23	INTRON	INTRON	THOC2	ENSG00000125676.20	ENST00000448128.5:ENST00000245838.13:ENST00000441692.5:ENST00000492203.1:ENST00000497887.5:ENST00000618150.4:ENST00000432353.5:ENST00000455053.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	50	2	2.53671	2.650655	2.7646	0.0162075	0.00624027	0.101453	0.0718843
chr7	111473342	111473442	3623220	0	-	0.39	(0.378,0.408]	chr7	337108	806	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000452895.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding	6	81	2	1.50417	2.650605	3.79704	0.0384675	3.6912e-4	0.159169	0.0178272
chr14	37141082	37141182	5877698	0	-	0.41	(0.408,0.44]	chr14	558013	2657	INTRON	INTRON	SLC25A21	ENSG00000183032.12	ENST00000331299.6:ENST00000555449.5:ENST00000557611.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	112	2	2.36252	2.6506049999999997	2.93869	0.00260554	2.73901e-4	0.0455058	0.0147448
chr1	167947414	167947513	248596	0	+	0.343434	(0.32,0.35]	chr1	29536	98	INTRON	INTRON	DCAF6	ENSG00000143164.16	ENST00000450548.5:ENST00000470919.5:ENST00000432587.6:ENST00000367843.7:ENST00000470721.5:ENST00000367840.4:ENST00000312263.10:ENST00000455334.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	58	2	2.45306	2.6505900000000002	2.84812	0.0147575	0.00916394	0.0983813	0.0855292
chr17	45036441	45036541	6781955	0	-	0.54	(0.515,0.57]	chr17	669007	10	INTRON	INTRON	DCAKD	ENSG00000172992.13	ENST00000342350.10:ENST00000452796.7:ENST00000651974.1:ENST00000310604.9:ENST00000688601.1:ENST00000614054.5:ENST00000687739.1:ENST00000688897.1:ENST00000687955.1:ENST00000688577.1:ENST00000588499.6:ENST00000684999.1:ENST00000692180.1:ENST00000693065.1:ENST00000691739.1:ENST00000687525.1:ENST00000686754.1:ENST00000687463.1:ENST00000685712.1:ENST00000592902.6:ENST00000685986.1:ENST00000692907.1:ENST00000689764.1:ENST00000687414.1:ENST00000693328.1:ENST00000688568.1:ENST00000588295.2:ENST00000593094.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	72	2	2.62817	2.6505549999999998	2.67294	0.004048	0.00112534	0.0578376	0.0306963
chr22	20110795	20110893	7478553	0	+	0.55102	(0.515,0.57]	chr22	762762	8	UTR3	UTR3:EXON_MRNA	DGCR8	ENSG00000128191.16	ENST00000383024.6:ENST00000351989.8:ENST00000495826.5:ENST00000407755.1:ENST00000498171.5:ENST00000475941.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	72	2	2.62817	2.6505549999999998	2.67294	0.004048	0.00112534	0.0578376	0.0306963
chr3	60238129	60238229	1711995	0	-	0.34	(0.32,0.35]	chr3	176138	1574	INTRON	INTRON	FHIT	ENSG00000189283.10	ENST00000492590.6:ENST00000476844.5:ENST00000468189.5:ENST00000488467.5	protein_coding	protein_coding	protein_coding	protein_coding	6	91	2	1.61334	2.650545	3.68775	0.0322135	4.66127e-4	0.132553	0.0195589
chr1	86921696	86921796	153663	0	+	0.34	(0.32,0.35]	chr1	16952	55	INTRON	INTRON	HS2ST1	ENSG00000153936.18	ENST00000370550.10:ENST00000370551.8:ENST00000687893.1:ENST00000693745.1:ENST00000689904.1:ENST00000690674.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	58	2	2.35591	2.650505	2.9451	0.0128129	0.011051	0.0990564	0.0873897
chr17	39255361	39255461	6765174	0	-	0.47	(0.44,0.476]	chr17	665413	28	UTR3	UTR3:EXON_MRNA	FBXL20	ENSG00000108306.13	ENST00000264658.11	protein_coding	protein_coding	protein_coding	protein_coding	3	50	2	2.49823	2.65049	2.80275	0.0146513	0.00718224	0.0982604	0.0756118
chr6	70435511	70435610	2894226	0	+	0.454545	(0.44,0.476]	chr6	273957	67	INTRON	INTRON	FAM135A	ENSG00000082269.17	ENST00000505769.5:ENST00000515323.5:ENST00000418814.7:ENST00000515280.5:ENST00000507085.5:ENST00000457062.6:ENST00000361499.7:ENST00000370479.7:ENST00000194672.11:ENST00000505868.1:ENST00000393299.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	50	2	2.49823	2.65049	2.80275	0.0146513	0.00718224	0.0982604	0.0756118
chr15	84555370	84555470	6251220	0	-	0.35	(0.32,0.35]	chr15	596587	3	SS3_PROX	SS3_PROX:INTRON	UBE2Q2P1	ENSG00000189136.9	ENST00000354771.8:ENST00000339094.5:ENST00000561403.6:ENST00000558251.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	6	89	2	1.8807	2.65048	3.42026	0.0106415	0.00219805	0.0915714	0.0417893
chr1	26707629	26707729	51287	0	+	0.41	(0.408,0.44]	chr1	6542	97	INTRON	INTRON	ARID1A	ENSG00000117713.21	ENST00000430799.7:ENST00000324856.13:ENST00000637465.1:ENST00000457599.6	protein_coding	protein_coding	protein_coding	protein_coding	2	38	2	2.58179	2.65045	2.71911	0.024638	0.0189489	0.131869	0.108861
chr14	101971026	101971126	5820285	0	+	0.41	(0.408,0.44]	chr14	551975	57	INTRON	INTRON	DYNC1H1	ENSG00000197102.14	ENST00000360184.10:ENST00000684561.1:ENST00000680313.1:ENST00000679720.1:ENST00000680715.1:ENST00000681283.1:ENST00000681822.1:ENST00000679910.1:ENST00000681574.1:ENST00000645039.2:ENST00000645149.2:ENST00000680200.1:ENST00000680120.1:ENST00000644881.2:ENST00000681066.1:ENST00000680423.1:ENST00000681536.1:ENST00000679486.1:ENST00000681010.1:ENST00000679629.1:ENST00000681123.1:ENST00000680874.1:ENST00000680137.1:ENST00000643508.2:ENST00000680808.1:ENST00000681311.1:ENST00000681859.1:ENST00000643684.1:ENST00000643958.2:ENST00000680001.1:ENST00000681668.1:ENST00000645114.2:ENST00000681751.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	38	2	2.58179	2.65045	2.71911	0.024638	0.0189489	0.131869	0.108861
chr17	31941776	31941875	6595724	0	+	0.545455	(0.515,0.57]	chr17	641548	9	INTRON	INTRON	SUZ12	ENSG00000178691.11	ENST00000322652.10:ENST00000580398.1	protein_coding	protein_coding	protein_coding	protein_coding	7	88	2	1.92814	2.65045	3.37276	0.00827421	1.02064e-4	0.0774402	0.00853098
chr5	151803337	151803437	2522142	0	+	0.58	(0.57,1]	chr5	241367	4	SS3_PROX	SS3_PROX:INTRON	G3BP1	ENSG00000145907.16	ENST00000678070.1:ENST00000678964.1:ENST00000678925.1:ENST00000394123.7:ENST00000676978.1:ENST00000679289.1:ENST00000677493.1:ENST00000676644.1:ENST00000677757.1:ENST00000522761.6:ENST00000676827.1:ENST00000520177.6:ENST00000676634.1:ENST00000678854.1:ENST00000676911.1:ENST00000356245.8:ENST00000678646.1:ENST00000677381.1:ENST00000678904.1:ENST00000678910.1:ENST00000678101.1:ENST00000677105.1:ENST00000678369.1:ENST00000678564.1:ENST00000677923.1:ENST00000677323.1:ENST00000677687.1:ENST00000679193.1:ENST00000678825.1:ENST00000678657.1:ENST00000676507.1:ENST00000678612.1:ENST00000676715.1:ENST00000676899.1:ENST00000677658.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	81	2	2.44817	2.6504250000000003	2.85268	4.98378e-4	3.419e-5	0.0206993	0.00466891
chr9	15501477	15501576	4235988	0	-	0.363636	(0.35,0.378]	chr9	389324	89	INTRON	INTRON	PSIP1	ENSG00000164985.15	ENST00000380738.8:ENST00000380733.9:ENST00000380716.8:ENST00000380715.5:ENST00000397519.6:ENST00000487363.5:ENST00000463712.6:ENST00000488797.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	55	2	2.63527	2.6503699999999997	2.66547	0.0233639	0.00443588	0.118323	0.061054
chr13	112732765	112732865	5546679	0	+	0.51	(0.476,0.515]	chr13	529925	152	INTRON	INTRON	ATP11A	ENSG00000068650.19	ENST00000375645.8:ENST00000375630.6:ENST00000487903.5:ENST00000466946.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	50	2	2.19809	2.650365	3.10264	0.020317	0.00543163	0.121522	0.0645052
chr3	33669504	33669604	1653516	0	-	0.24	[0,0.28]	chr3	169658	56	INTRON	INTRON	CLASP2	ENSG00000163539.18	ENST00000399362.8:ENST00000682230.1:ENST00000468888.6:ENST00000359576.9	protein_coding	protein_coding	protein_coding	protein_coding	4	87	2	2.28786	2.650365	3.01287	0.0115634	0.00782185	0.0889104	0.0788675
chr8	73858169	73858269	3972053	0	-	0.49	(0.476,0.515]	chr8	364247	273	INTRON	INTRON	ENSG00000258677:UBE2W	ENSG00000258677.2:ENSG00000104343.21	ENST00000358757.5:ENST00000602593.6:ENST00000517608.5:ENST00000650817.1:ENST00000422906.6:ENST00000419880.7:ENST00000651945.1:ENST00000519277.5:ENST00000519255.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	50	2	2.19809	2.650365	3.10264	0.020317	0.00543163	0.121522	0.0645052
chr12	57750563	57750655	5339759	0	-	0.434783	(0.408,0.44]	chr12	510921	1	SS3_ADJ	SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CDK4	ENSG00000135446.17	ENST00000312990.10:ENST00000257904.11:ENST00000549606.5:ENST00000553237.5:ENST00000546489.5:ENST00000551888.5:ENST00000547281.5:ENST00000550419.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	113	2	1.95554	2.650335	3.34513	0.00485149	2.26766e-4	0.0640618	0.0138494
chr1	47230646	47230746	445433	0	-	0.43	(0.408,0.44]	chr1	53968	2	SS5_PROX	SS5_PROX:INTRON	TAL1	ENSG00000162367.12	ENST00000371884.6:ENST00000691006.1:ENST00000481091.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	93	2	2.47605	2.65033	2.82461	0.00241819	0.00116417	0.0442901	0.0314524
chr12	50408207	50408307	5136406	0	+	0.53	(0.515,0.57]	chr12	484352	50	INTRON	INTRON	LARP4	ENSG00000161813.23	ENST00000550522.5:ENST00000293618.12:ENST00000429001.7:ENST00000398473.7:ENST00000548174.5:ENST00000548697.5:ENST00000548993.5:ENST00000522085.5:ENST00000518444.5:ENST00000551886.5:ENST00000523389.5:ENST00000518561.5:ENST00000347328.9:ENST00000550260.1:ENST00000517559.5:ENST00000552445.1	protein_coding	protein_coding	protein_coding	protein_coding	4	59	2	2.21273	2.65031	3.08789	0.0196151	4.83127e-4	0.109486	0.0199261
chr17	66315417	66315516	6662425	0	+	0.323232	(0.32,0.35]	chr17	650320	89	INTRON	INTRON	PRKCA	ENSG00000154229.12	ENST00000413366.8:ENST00000578063.5:ENST00000583361.1:ENST00000284384.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	131	2	2.11451	2.65031	3.18611	0.00267385	6.68157e-4	0.0478106	0.0235847
chr1	50930778	50930878	451961	0	-	0.33	(0.32,0.35]	chr1	54267	724	INTRON	INTRON	FAF1	ENSG00000185104.21	ENST00000396153.7:ENST00000487898.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	146	2	2.27286	2.6502850000000002	3.02771	0.00287114	2.14325e-4	0.0474836	0.0128514
chr17	4681502	4681601	6712710	0	-	0.464646	(0.44,0.476]	chr17	657897	43	INTRON	INTRON	PELP1	ENSG00000141456.16	ENST00000572293.7:ENST00000301396.8:ENST00000436683.6:ENST00000574876.5:ENST00000573523.5:ENST00000575329.5:ENST00000570571.5:ENST00000570387.5:ENST00000575101.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	50	2	2.27304	2.6502749999999997	3.02751	0.0158915	0.00715968	0.109464	0.0723634
chrX	71423441	71423529	7678822	0	+	0.443182	(0.44,0.476]	chrX	786284	3	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TAF1	ENSG00000147133.17	ENST00000683202.1:ENST00000373790.9:ENST00000423759.6:ENST00000683782.1:ENST00000683668.1:ENST00000276072.9:ENST00000373775.8:ENST00000485087.6:ENST00000437147.8:ENST00000683358.1:ENST00000682124.1:ENST00000461764.6:ENST00000492404.6:ENST00000462588.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	50	2	2.27304	2.6502749999999997	3.02751	0.0158915	0.00715968	0.109464	0.0723634
chrX	149956312	149956411	7730451	0	+	0.464646	(0.44,0.476]	chrX	791129	34	INTRON	INTRON	EOLA2-DT	ENSG00000235703.7	ENST00000670799.1:ENST00000654890.1:ENST00000449111.5:ENST00000444489.5:ENST00000669126.1:ENST00000452864.2:ENST00000671125.1	lncRNA	lncRNA	lncRNA	lncRNA	3	50	2	2.27304	2.6502749999999997	3.02751	0.0158915	0.00715968	0.109464	0.0723634
chr21	44791293	44791393	7468626	0	-	0.6	(0.57,1]	chr21	761177	28	INTRON	INTRON	UBE2G2	ENSG00000184787.19	ENST00000345496.7:ENST00000497630.5:ENST00000477954.5:ENST00000491513.5:ENST00000330942.9:ENST00000478200.1:ENST00000497664.5:ENST00000462569.5:ENST00000490450.5:ENST00000496395.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	33	2	2.16779	2.6501650000000003	3.13254	0.00900694	0.00310655	0.0803518	0.0512344
chr10	11555607	11555707	4555503	0	-	0.4	(0.378,0.408]	chr10	420447	235	INTRON	INTRON	USP6NL	ENSG00000148429.15	ENST00000609104.6:ENST00000379237.6	protein_coding	protein_coding	protein_coding	protein_coding	2	39	2	2.63247	2.65016	2.66785	0.0224639	0.0215745	0.123836	0.11692
chr16	81616104	81616204	6406715	0	+	0.39	(0.378,0.408]	chr16	615041	52	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5:ENST00000565029.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	39	2	2.63247	2.65016	2.66785	0.0224639	0.0215745	0.123836	0.11692
chr17	42470311	42470405	6611405	0	+	0.382979	(0.378,0.408]	chr17	644091	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	ATP6V0A1	ENSG00000033627.17	ENST00000393829.6:ENST00000588629.1:ENST00000343619.9:ENST00000537728.5:ENST00000588901.5:ENST00000264649.10:ENST00000585525.5:ENST00000544137.5:ENST00000589727.5:ENST00000592324.1:ENST00000587375.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	97	2	2.15574	2.6500450000000004	3.14435	0.00519611	6.4029e-4	0.0654762	0.0231685
chr1	2258853	2258952	2472	0	+	0.565657	(0.515,0.57]	chr1	557	104	INTRON	INTRON	SKI	ENSG00000157933.10	ENST00000378536.5:ENST00000508416.1:ENST00000478223.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	69	2	2.496	2.65	2.804	0.00225531	0.00215855	0.0436331	0.0417866
chrX	154363363	154363442	7913688	0	-	0.493671	(0.476,0.515]	chrX	805774	2	INTRON	INTRON	FLNA	ENSG00000196924.19	ENST00000420627.5:ENST00000422373.6:ENST00000360319.9:ENST00000369856.8:ENST00000369850.10:ENST00000676696.1:ENST00000610817.5:ENST00000673639.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	50	2	2.10874	2.649965	3.19119	0.0285608	0.00325748	0.12666	0.0524329
chr16	2458178	2458274	6278220	0	+	0.416667	(0.408,0.44]	chr16	600444	13	UTR3	UTR3:EXON_MRNA	CCNF	ENSG00000162063.13	ENST00000293968.11:ENST00000397066.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	17	211	2	1.40036	2.64995	3.89954	0.0137079	1.62258e-6	0.102281	8.48005e-4
chr7	119739523	119739623	3628733	0	-	0.52	(0.515,0.57]	chr7	337319	342	INTRON	INTRON	LINC02476	ENSG00000225546.6	ENST00000660268.1:ENST00000431071.5	lncRNA	lncRNA	lncRNA	lncRNA	6	84	2	2.53705	2.64992	2.76279	0.00186194	7.25448e-4	0.039946	0.0247646
chr12	103933655	103933755	5208360	0	+	0.32	(0.28,0.32]	chr12	492920	3	SS3_PROX	SS3_PROX:INTRON	HSP90B1	ENSG00000166598.16	ENST00000550595.2:ENST00000681861.1:ENST00000680899.1:ENST00000680391.1:ENST00000680653.1:ENST00000679779.1:ENST00000680281.1:ENST00000681949.1:ENST00000680989.1:ENST00000614327.2:ENST00000680762.1:ENST00000680663.1:ENST00000681172.1:ENST00000640977.2:ENST00000540297.7:ENST00000681941.1:ENST00000681910.1:ENST00000681704.1:ENST00000679377.1:ENST00000299767.10:ENST00000681174.1:ENST00000680370.1:ENST00000679538.1:ENST00000681698.1:ENST00000680242.1:ENST00000548462.5:ENST00000680316.1:ENST00000679861.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	63	2	2.33771	2.64979	2.96187	0.0142701	0.0114995	0.103838	0.0889104
chr15	42513747	42513847	6009789	0	+	0.48	(0.476,0.515]	chr15	572165	3	SS5_PROX	SS5_PROX:INTRON	SNAP23	ENSG00000092531.10	ENST00000561526.5:ENST00000568451.5:ENST00000563765.5:ENST00000349777.5:ENST00000249647.8:ENST00000564153.5:ENST00000567094.5:ENST00000566327.5:ENST00000568331.5:ENST00000566035.5:ENST00000568859.5:ENST00000568514.5:ENST00000397138.5:ENST00000563873.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	61	2	2.41328	2.64979	2.8863	0.0111679	0.00355364	0.0877435	0.0547657
chr22	19109451	19109551	7551885	0	-	0.34	(0.32,0.35]	chr22	771903	196	INTRON	INTRON	DGCR2	ENSG00000070413.20	ENST00000537045.5:ENST00000545799.5:ENST00000263196.12:ENST00000389262.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	71	2	1.64769	2.6497800000000002	3.65187	0.0578603	5.49434e-4	0.167723	0.0213049
chr6	87169273	87169373	2913394	0	+	0.52	(0.515,0.57]	chr6	275277	2	SS3_PROX	SS3_PROX:INTRON	ZNF292	ENSG00000188994.13	ENST00000392985.3:ENST00000369577.8:ENST00000369578.6:ENST00000518845.1:ENST00000339907.8:ENST00000496806.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	72	2	1.80447	2.649715	3.49496	0.00879341	9.61701e-4	0.084878	0.0282401
chr4	32201590	32201689	1943470	0	+	0.181818	[0,0.28]	chr4	194753	90	INTRON	INTRON	LINC02506	ENSG00000251129.3	ENST00000665582.2:ENST00000667252.2:ENST00000660373.2:ENST00000684849.1:ENST00000655951.1	lncRNA	lncRNA	lncRNA	lncRNA	2	53	2	2.44242	2.64966	2.8569	0.0491024	0.013822	0.155269	0.10247
chr5	6625063	6625163	2566697	0	-	0.26	[0,0.28]	chr5	245959	1	SS5_PROX	SS5_PROX:INTRON	NSUN2	ENSG00000037474.15	ENST00000264670.11:ENST00000504374.5:ENST00000506139.5:ENST00000505264.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	53	2	2.44242	2.64966	2.8569	0.0491024	0.013822	0.155269	0.10247
chr5	38940111	38940210	2604255	0	-	0.272727	[0,0.28]	chr5	247703	23	UTR3	UTR3:EXON_MRNA	RICTOR	ENSG00000164327.13	ENST00000357387.8:ENST00000511516.5:ENST00000296782.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	53	2	2.44242	2.64966	2.8569	0.0491024	0.013822	0.155269	0.10247
chr10	68791636	68791728	4443003	0	+	0.217391	[0,0.28]	chr10	409731	5	UTR3	UTR3:EXON_MRNA	CCAR1	ENSG00000060339.14	ENST00000630771.2:ENST00000265872.11	protein_coding	protein_coding	protein_coding	protein_coding	2	53	2	2.49527	2.649615	2.80396	0.0436497	0.0161429	0.14882	0.109464
chr13	28202342	28202442	5461471	0	+	0.26	[0,0.28]	chr13	523261	46	INTRON	INTRON	PAN3	ENSG00000152520.14	ENST00000503791.5:ENST00000380958.8:ENST00000399613.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	53	2	2.49527	2.649615	2.80396	0.0436497	0.0161429	0.14882	0.109464
chr7	32871180	32871280	3515414	0	-	0.21	[0,0.28]	chr7	327767	3	SS3_PROX	SS3_PROX:INTRON	KBTBD2	ENSG00000170852.12	ENST00000304056.9:ENST00000485611.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	53	2	2.49527	2.649615	2.80396	0.0436497	0.0161429	0.14882	0.109464
chr17	81685925	81686021	6691014	0	+	0.541667	(0.515,0.57]	chr17	654014	3	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HGS	ENSG00000185359.14	ENST00000677161.1:ENST00000678096.1:ENST00000679191.1:ENST00000676546.1:ENST00000678387.1:ENST00000679170.1:ENST00000677109.1:ENST00000677484.1:ENST00000678115.1:ENST00000677243.1:ENST00000677044.1:ENST00000679336.1:ENST00000678196.1:ENST00000676462.1:ENST00000576393.5:ENST00000576498.5:ENST00000678105.1:ENST00000676478.1:ENST00000329138.9:ENST00000676721.1:ENST00000677209.1:ENST00000677225.1:ENST00000678866.1:ENST00000679275.1:ENST00000678541.1:ENST00000676729.1:ENST00000572392.2:ENST00000677012.1:ENST00000577012.1:ENST00000571518.6:ENST00000678846.1:ENST00000678658.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	19	239	2	2.11231	2.64959	3.18687	4.8366e-4	1.08606e-6	0.0203825	5.99786e-4
chr4	1731601	1731701	1910238	0	+	0.44	(0.408,0.44]	chr4	191591	3	SS5_PROX	SS5_PROX:INTRON	TACC3	ENSG00000013810.21	ENST00000651472.1:ENST00000612220.5:ENST00000484651.5:ENST00000313288.9:ENST00000652770.1:ENST00000651251.1:ENST00000650779.1:ENST00000470136.2:ENST00000651817.1:ENST00000466077.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	77	2	1.66945	2.649585	3.62972	0.0218479	7.19047e-4	0.123836	0.0246202
chr10	843658	843749	4541696	0	-	0.362637	(0.35,0.378]	chr10	419257	2	INTRON	INTRON	LARP4B	ENSG00000107929.16	ENST00000688365.1:ENST00000316157.8:ENST00000690516.1:ENST00000689323.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	103	2	2.27878	2.6495249999999997	3.02027	0.0041508	8.40802e-4	0.0568675	0.0263691
chr1	246908258	246908357	681722	0	-	0.313131	(0.28,0.32]	chr1	80023	1	INTRON	INTRON	AHCTF1	ENSG00000153207.16	ENST00000648844.2:ENST00000326225.3:ENST00000366508.5	protein_coding	protein_coding	protein_coding	protein_coding	6	125	2	2.6285	2.649435	2.67037	0.00255625	0.00141946	0.0449775	0.034662
chr17	30748933	30749032	6589977	0	+	0.515152	(0.476,0.515]	chr17	640860	52	INTRON	INTRON	SUZ12P1	ENSG00000264538.7	ENST00000578070.5:ENST00000579526.5:ENST00000690405.1:ENST00000497969.6:ENST00000578195.6:ENST00000582557.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	17	260	2	2.54376	2.6493849999999997	2.75501	1.12781e-4	2.36879e-5	0.00954883	0.00380885
chr16	85603615	85603715	6415868	0	+	0.4	(0.378,0.408]	chr16	615470	469	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	5	74	2	1.91906	2.64938	3.3797	0.0153989	0.00154501	0.100621	0.0362716
chr2	111435507	111435607	1211205	0	-	0.29	(0.28,0.32]	chr2	128899	47	INTRON	INTRON	MIR4435-2HG	ENSG00000172965.17	ENST00000645030.2:ENST00000642191.1:ENST00000673798.1:ENST00000645051.2:ENST00000673649.1:ENST00000669658.1:ENST00000669917.1:ENST00000661559.1:ENST00000653687.1:ENST00000667670.1:ENST00000609220.2:ENST00000656760.1:ENST00000609902.6:ENST00000666683.1:ENST00000674070.1:ENST00000662335.1:ENST00000664422.1:ENST00000673775.1:ENST00000674092.1:ENST00000673958.1:ENST00000658936.1:ENST00000662635.1:ENST00000666204.1:ENST00000659458.1:ENST00000664443.1:ENST00000670295.1:ENST00000661655.1:ENST00000666390.1:ENST00000659079.1:ENST00000660442.1:ENST00000664009.1:ENST00000439362.6:ENST00000654473.1:ENST00000664999.1:ENST00000673728.1:ENST00000659791.1:ENST00000666144.1:ENST00000659933.1:ENST00000670715.1:ENST00000653568.1:ENST00000643013.1:ENST00000673866.1:ENST00000443467.6:ENST00000669875.1:ENST00000673653.1:ENST00000673988.1:ENST00000661945.1:ENST00000669515.1:ENST00000431385.6:ENST00000656416.1:ENST00000674037.1:ENST00000432818.5:ENST00000674013.1:ENST00000444301.5:ENST00000673964.1:ENST00000673845.1:ENST00000673756.1:ENST00000673960.1:ENST00000673804.1:ENST00000673632.1:ENST00000453478.2:ENST00000673937.1:ENST00000673654.1:ENST00000409569.2:ENST00000674087.1:ENST00000419736.5:ENST00000673840.1:ENST00000674045.1:ENST00000673821.1:ENST00000643766.1:ENST00000308604.5:ENST00000674026.1:ENST00000604981.5:ENST00000603310.5:ENST00000673894.1:ENST00000442293.5:ENST00000441075.1	lncRNA	lncRNA	lncRNA	lncRNA	3	64	2	1.86684	2.64935	3.43186	0.0605813	0.00160646	0.171122	0.0367961
chr16	23919838	23919938	6324599	0	+	0.33	(0.32,0.35]	chr16	605701	261	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000498739.1	protein_coding	protein_coding	protein_coding	protein_coding	7	97	2	1.71888	2.6493349999999998	3.57979	0.014315	0.00118589	0.104106	0.0315652
chr22	19143856	19143956	7552166	0	-	0.4	(0.378,0.408]	chr22	771954	4	SS5_PROX	SS5_PROX:INTRON	ESS2	ENSG00000100056.12	ENST00000252137.11:ENST00000434568.5:ENST00000472073.1:ENST00000469466.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	65	2	1.72045	2.64933	3.57821	0.0424671	9.60401e-4	0.161763	0.0282401
chr2	26796766	26796865	715861	0	+	0.434343	(0.408,0.44]	chr2	82684	23	INTRON	INTRON	CENPA	ENSG00000115163.15	ENST00000460030.1	protein_coding	processed_transcript	protein_coding	processed_transcript	7	103	2	2.23161	2.649295	3.06698	0.00206564	8.51999e-4	0.04217	0.0267428
chr17	47153881	47153978	6789024	0	-	0.412371	(0.408,0.44]	chr17	669579	16	INTRON	INTRON	CDC27	ENSG00000004897.12	ENST00000066544.8:ENST00000531206.5:ENST00000533415.5:ENST00000527547.5:ENST00000526866.5:ENST00000525495.6:ENST00000574304.5:ENST00000575830.2:ENST00000576484.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	52	2	2.40661	2.64927	2.89193	0.011475	0.00950364	0.0888882	0.0863579
chr5	141588450	141588550	2739883	0	-	0.3	(0.28,0.32]	chr5	258167	2	SS3_PROX	SS3_PROX:INTRON	DIAPH1	ENSG00000131504.18	ENST00000647433.1:ENST00000389054.8:ENST00000518047.5:ENST00000523100.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	119	2	1.842	2.649225	3.45645	0.023346	1.23958e-4	0.118323	0.00952291
chr20	57517103	57517199	7359197	0	-	0.291667	(0.28,0.32]	chr20	750466	9	INTRON	INTRON	CTCFL	ENSG00000124092.13	ENST00000423479.7:ENST00000429804.7:ENST00000609232.5:ENST00000608263.5:ENST00000243914.8:ENST00000371196.6:ENST00000433949.7:ENST00000502686.6:ENST00000422109.6:ENST00000426658.6:ENST00000608440.5:ENST00000422869.6:ENST00000608425.5:ENST00000539382.5:ENST00000608903.5:ENST00000432255.6:ENST00000608108.1:ENST00000608858.5:ENST00000607923.5:ENST00000608720.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	64	2	2.62686	2.649195	2.67153	0.0289217	0.00436402	0.1274	0.060356
chr10	60787363	60787461	4435861	0	+	0.377551	(0.35,0.378]	chr10	409185	4	INTRON	INTRON	CDK1	ENSG00000170312.17	ENST00000519078.6:ENST00000316629.8:ENST00000395284.8:ENST00000448257.6:ENST00000373809.2	protein_coding	protein_coding	protein_coding	protein_coding	22	356	2	2.56052	2.6491	2.73768	7.53362e-5	2.08025e-5	0.00777227	0.00353198
chr18	12966483	12966582	6876345	0	+	0.484848	(0.476,0.515]	chr18	681295	16	INTRON	INTRON	SEH1L	ENSG00000085415.16	ENST00000262124.15:ENST00000399892.7:ENST00000585730.5:ENST00000589446.5:ENST00000587761.1:ENST00000588251.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	120	2	2.07412	2.649025	3.22393	0.00195799	3.84737e-4	0.0411469	0.0182343
chr3	150757348	150757447	1841941	0	-	0.393939	(0.378,0.408]	chr3	185277	143	INTRON	INTRON	SIAH2	ENSG00000181788.4	ENST00000312960.4:ENST00000482706.1	protein_coding	protein_coding	protein_coding	protein_coding	3	53	2	2.30628	2.64899	2.9917	0.0163339	0.0068789	0.101571	0.0749442
chr18	2562317	2562415	6942531	0	-	0.438776	(0.408,0.44]	chr18	686665	2	INTRON	INTRON	METTL4	ENSG00000101574.15	ENST00000319888.10:ENST00000574538.2:ENST00000573134.1:ENST00000577166.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	52	2	2.51492	2.648905	2.78289	0.0329839	0.0022785	0.133816	0.0437013
chr1	162522749	162522849	238248	0	+	0.42	(0.408,0.44]	chr1	28688	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	UHMK1	ENSG00000152332.16	ENST00000545294.5:ENST00000538489.5:ENST00000489294.2:ENST00000282169.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	22	286	2	2.05474	2.6489	3.24306	3.02631e-4	1.18579e-5	0.0155054	0.00273226
chr6	98890892	98890992	3165010	0	-	0.27	[0,0.28]	chr6	295187	99	INTRON	INTRON	FBXL4	ENSG00000112234.9	ENST00000369244.7:ENST00000229971.2	protein_coding	protein_coding	protein_coding	protein_coding	2	55	2	2.43761	2.6488449999999997	2.86008	0.0423864	0.0177015	0.161744	0.105304
chr15	40605449	40605549	6002545	0	+	0.55	(0.515,0.57]	chr15	570857	3	SS5_PROX	SS5_PROX:INTRON	KNL1	ENSG00000137812.21	ENST00000346991.9:ENST00000528975.5:ENST00000614337.4:ENST00000399668.7:ENST00000532056.5:ENST00000533001.1:ENST00000534204.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	33	2	2.23915	2.64877	3.05839	0.0596178	0.00485936	0.16883600000000001	0.0640618
chr2	182756669	182756769	937801	0	+	0.56	(0.515,0.57]	chr2	102888	2	SS5_PROX	SS5_PROX:INTRON	DNAJC10	ENSG00000077232.19	ENST00000679526.1:ENST00000680258.1:ENST00000679491.1:ENST00000680667.1:ENST00000264065.12:ENST00000616986.5:ENST00000680480.1:ENST00000681873.1:ENST00000680060.1:ENST00000681139.1:ENST00000681146.1:ENST00000650903.2:ENST00000680484.1:ENST00000491074.6:ENST00000679884.1:ENST00000418559.6:ENST00000681122.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	33	2	2.23915	2.64877	3.05839	0.0596178	0.00485936	0.16883600000000001	0.0640618
chr4	150901208	150901306	2270616	0	-	0.530612	(0.515,0.57]	chr4	220865	6	INTRON	INTRON	LRBA	ENSG00000198589.14	ENST00000357115.9:ENST00000651943.2:ENST00000510413.5:ENST00000651035.1:ENST00000507224.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	33	2	2.23915	2.64877	3.05839	0.0596178	0.00485936	0.16883600000000001	0.0640618
chr6	118680091	118680191	3200611	0	-	0.52	(0.515,0.57]	chr6	298050	152	INTRON	INTRON	CEP85L	ENSG00000111860.14	ENST00000368488.9:ENST00000434604.5:ENST00000392500.7	protein_coding	protein_coding	protein_coding	protein_coding	2	33	2	2.23915	2.64877	3.05839	0.0596178	0.00485936	0.16883600000000001	0.0640618
chr18	2722518	2722590	6865556	0	+	0.388889	(0.378,0.408]	chr18	680046	1	CDS	CDS:EXON_MRNA:INTRON	SMCHD1	ENSG00000101596.17	ENST00000320876.11:ENST00000688342.1:ENST00000693213.1:ENST00000577880.5:ENST00000584897.5:ENST00000581711.1:ENST00000583441.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	101	2	2.53753	2.6487499999999997	2.75997	0.00271682	7.19668e-4	0.0467523	0.0244856
chr12	53459843	53459943	5142968	0	+	0.54	(0.515,0.57]	chr12	485402	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PCBP2	ENSG00000197111.16	ENST00000546463.6:ENST00000437231.5:ENST00000447282.5:ENST00000359282.9:ENST00000549863.5:ENST00000359462.9:ENST00000550520.6:ENST00000552296.6:ENST00000551104.5:ENST00000552819.5:ENST00000455667.7:ENST00000439930.7:ENST00000548933.5:ENST00000546652.6:ENST00000562264.5:ENST00000548190.1:ENST00000550585.5:ENST00000547987.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	16	167	2	1.66662	2.64871	3.6308	0.00384906	4.47293e-6	0.0562562	0.00155688
chr7	139417160	139417254	3438176	0	+	0.457447	(0.44,0.476]	chr7	320378	12	EXON_LNCRNA	EXON_LNCRNA:SS3_PROX:INTRON	LUC7L2:FMC1-LUC7L2	ENSG00000146963.18:ENSG00000269955.2	ENST00000541170.7:ENST00000541515.3:ENST00000619796.4:ENST00000354926.9:ENST00000456182.5:ENST00000263545.7:ENST00000498518.1:ENST00000482860.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	14	213	2	2.39916	2.6483600000000003	2.89756	2.73534e-4	5.04731e-5	0.0151711	0.0058291
chrX	138895541	138895641	7900518	0	-	0.36	(0.35,0.378]	chrX	804239	305	INTRON	INTRON	FGF13	ENSG00000129682.16	ENST00000441825.8:ENST00000626909.2:ENST00000436198.5:ENST00000455663.5:ENST00000448673.1:ENST00000421460.1	protein_coding	protein_coding	protein_coding	protein_coding	2	41	2	2.24535	2.648355	3.05136	0.0647516	0.00578894	0.179192	0.0684334
chr3	9477859	9477957	1359747	0	+	0.642857	(0.57,1]	chr3	142827	19	UTR3	UTR3:EXON_MRNA:INTRON	SETD5	ENSG00000168137.20	ENST00000402198.7:ENST00000406341.5:ENST00000407969.5:ENST00000399686.6	protein_coding	protein_coding	protein_coding	protein_coding	9	70	2	2.43863	2.648325	2.85802	3.01883e-4	2.75362e-4	0.0160895	0.0147997
chr3	19962749	19962849	1376192	0	+	0.33	(0.32,0.35]	chr3	145051	95	INTRON	INTRON	RAB5A	ENSG00000144566.11	ENST00000273047.9:ENST00000412966.5:ENST00000446547.5:ENST00000422242.1:ENST00000469122.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	211	2	2.43954	2.64832	2.8571	8.26213e-4	1.3329e-4	0.0265898	0.00996366
chr1	109334052	109334151	520366	0	-	0.525253	(0.515,0.57]	chr1	61131	61	INTRON	INTRON	SORT1	ENSG00000134243.12	ENST00000538502.5:ENST00000256637.8:ENST00000466471.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	43	2	2.39351	2.64831	2.90311	0.0100431	0.0094233	0.0881096	0.0817766
chr20	63717348	63717448	7300398	0	+	0.56	(0.515,0.57]	chr20	743023	78	INTRON	INTRON	ZGPAT	ENSG00000197114.12	ENST00000448100.6:ENST00000355969.11:ENST00000477340.5:ENST00000357119.8:ENST00000369967.7:ENST00000328969.5:ENST00000472711.5:ENST00000478385.5:ENST00000468235.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	43	2	2.39351	2.64831	2.90311	0.0100431	0.0094233	0.0881096	0.0817766
chr5	55424246	55424340	2356281	0	+	0.542553	(0.515,0.57]	chr5	227276	14	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	MTREX	ENSG00000039123.16	ENST00000230640.10:ENST00000506750.5:ENST00000508716.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	43	2	2.39351	2.64831	2.90311	0.0100431	0.0094233	0.0881096	0.0817766
chr19	19025104	19025202	7153728	0	-	0.326531	(0.32,0.35]	chr19	723064	6	CDS	CDS:UTR3:EXON_MRNA	SUGP2	ENSG00000064607.17	ENST00000594773.5:ENST00000337018.10:ENST00000452918.7:ENST00000330854.15:ENST00000601879.5:ENST00000600239.5:ENST00000600377.1:ENST00000598240.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	131	2	2.02531	2.6483	3.27129	0.00401813	4.56534e-4	0.0578189	0.0196892
chr1	174268028	174268128	258201	0	+	0.33	(0.32,0.35]	chr1	30773	151	INTRON	INTRON	RABGAP1L	ENSG00000152061.24	ENST00000357444.10:ENST00000251507.8:ENST00000681986.1:ENST00000457696.1	protein_coding	protein_coding	protein_coding	protein_coding	3	58	2	2.49929	2.64818	2.79707	0.0170923	0.00776612	0.104099	0.0787356
chr17	15511156	15511255	6731939	0	-	0.343434	(0.32,0.35]	chr17	660295	38	INTRON	INTRON	TVP23C-CDRT4:TVP23C	ENSG00000259024.6:ENSG00000175106.17	ENST00000522212.6:ENST00000557349.5:ENST00000481756.7:ENST00000518506.4:ENST00000225576.7:ENST00000581273.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	58	2	2.49929	2.64818	2.79707	0.0170923	0.00776612	0.104099	0.0787356
chr7	32584444	32584543	3304144	0	+	0.343434	(0.32,0.35]	chr7	306851	5	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	AVL9	ENSG00000105778.20	ENST00000318709.9:ENST00000409301.5:ENST00000446718.1:ENST00000497020.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	58	2	2.49929	2.64818	2.79707	0.0170923	0.00776612	0.104099	0.0787356
chr10	6107413	6107509	4385879	0	+	0.46875	(0.44,0.476]	chr10	404786	8	INTRON	INTRON	RBM17	ENSG00000134453.16	ENST00000379888.9:ENST00000437845.6:ENST00000432931.5:ENST00000446108.5:ENST00000418631.5:ENST00000447032.1	protein_coding	protein_coding	protein_coding	protein_coding	8	127	2	2.36262	2.648165	2.93371	0.00255041	9.52156e-5	0.0449067	0.00819861
chr1	246115505	246115605	676787	0	-	0.36	(0.35,0.378]	chr1	79721	192	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000391836.3:ENST00000453676.5:ENST00000462422.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	56	2	2.36677	2.648145	2.92952	0.0139343	0.00881187	0.0957526	0.084878
chr1	236828091	236828191	342836	0	+	0.52	(0.515,0.57]	chr1	39879	8	INTRON	INTRON	MTR	ENSG00000116984.15	ENST00000680454.1:ENST00000366577.10:ENST00000674797.2:ENST00000679569.1:ENST00000650888.1:ENST00000463959.1:ENST00000535889.6:ENST00000651455.1:ENST00000681102.1:ENST00000679842.1:ENST00000681177.1:ENST00000681937.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	79	2	2.20043	2.6481149999999998	3.0958	0.00392045	5.63557e-4	0.0570863	0.0219303
chr19	9579613	9579712	7132933	0	-	0.454545	(0.44,0.476]	chr19	718825	102	INTRON	INTRON	ZNF121	ENSG00000197961.12	ENST00000320451.7:ENST00000586602.5	protein_coding	protein_coding	protein_coding	protein_coding	5	85	2	2.59888	2.6481149999999998	2.69735	0.00487719	0.00125459	0.0640618	0.0323608
chr22	20935043	20935143	7480694	0	+	0.52	(0.515,0.57]	chr22	763096	4	INTRON	INTRON	CRKL	ENSG00000099942.13	ENST00000354336.8:ENST00000411769.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	79	2	2.20043	2.6481149999999998	3.0958	0.00392045	5.63557e-4	0.0570863	0.0219303
chr7	157256130	157256224	3455141	0	+	0.43617	(0.408,0.44]	chr7	323019	15	INTRON	INTRON	UBE3C	ENSG00000009335.18	ENST00000348165.10:ENST00000470408.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	52	2	2.00768	2.6481000000000003	3.28852	0.035843	0.00287185	0.152216	0.0474836
chr10	75229801	75229901	4464536	0	+	0.29	(0.28,0.32]	chr10	411849	1	SS5_PROX	SS5_PROX:INTRON	VDAC2	ENSG00000165637.14	ENST00000543351.5:ENST00000298468.9:ENST00000332211.11:ENST00000313132.8:ENST00000460044.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	80	2	1.6633	2.6480300000000003	3.63276	0.0522231	0.00114475	0.177274	0.0308149
chr1	27480791	27480891	406671	0	-	0.52	(0.515,0.57]	chr1	48986	515	INTRON	INTRON	WASF2	ENSG00000158195.11	ENST00000618852.5:ENST00000536657.1	protein_coding	protein_coding	protein_coding	protein_coding	2	33	2	2.46104	2.648025	2.83501	0.032841	0.0117686	0.145164	0.0894475
chr16	4453433	4453530	6282847	0	+	0.515464	(0.515,0.57]	chr16	601442	26	INTRON	INTRON	DNAJA3	ENSG00000103423.14	ENST00000431375.6:ENST00000355296.8:ENST00000576911.5:ENST00000262375.11:ENST00000576180.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	33	2	2.46104	2.648025	2.83501	0.032841	0.0117686	0.145164	0.0894475
chr2	99386618	99386718	835319	0	+	0.57	(0.515,0.57]	chr2	93732	33	INTRON	INTRON	EIF5B	ENSG00000158417.11	ENST00000617677.1:ENST00000289371.11	protein_coding	protein_coding	protein_coding	protein_coding	2	33	2	2.46104	2.648025	2.83501	0.032841	0.0117686	0.145164	0.0894475
chr7	148739427	148739525	3444097	0	+	0.520408	(0.515,0.57]	chr7	321184	13	INTRON	INTRON	CUL1	ENSG00000055130.18	ENST00000409469.5:ENST00000662716.1:ENST00000665936.1:ENST00000663044.1:ENST00000602748.5:ENST00000663835.1:ENST00000655324.1:ENST00000662132.1:ENST00000325222.9:ENST00000656001.1:ENST00000666124.1:ENST00000671421.1:ENST00000671397.1:ENST00000662670.1:ENST00000660240.1:ENST00000662975.1:ENST00000660013.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	33	2	2.46104	2.648025	2.83501	0.032841	0.0117686	0.145164	0.0894475
chr9	136419394	136419490	4221384	0	+	0.5625	(0.515,0.57]	chr9	387554	4	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	PMPCA	ENSG00000165688.12	ENST00000371717.8:ENST00000399219.7:ENST00000462616.1:ENST00000444897.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	33	2	2.46104	2.648025	2.83501	0.032841	0.0117686	0.145164	0.0894475
chrX	71287355	71287450	7678036	0	+	0.536842	(0.515,0.57]	chrX	786067	13	INTRON	INTRON	NONO	ENSG00000147140.17	ENST00000677446.1:ENST00000677274.1:ENST00000535149.5:ENST00000420903.6:ENST00000678335.1:ENST00000678830.1:ENST00000677826.1:ENST00000473525.2:ENST00000678437.1:ENST00000676499.1:ENST00000676495.1:ENST00000678323.1:ENST00000677766.1:ENST00000679267.1:ENST00000373856.8:ENST00000679254.1:ENST00000677879.1:ENST00000677245.1:ENST00000373841.5:ENST00000276079.13:ENST00000679029.1:ENST00000677218.1:ENST00000676797.1:ENST00000679062.1:ENST00000678660.1:ENST00000677014.1:ENST00000678231.1:ENST00000474431.5:ENST00000677612.1:ENST00000677977.1:ENST00000471419.7:ENST00000472185.1:ENST00000413858.5:ENST00000486613.6:ENST00000450092.6:ENST00000454976.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	33	2	2.46104	2.648025	2.83501	0.032841	0.0117686	0.145164	0.0894475
chr5	27472321	27472420	2329587	0	+	0.464646	(0.44,0.476]	chr5	225098	2	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	PURPL	ENSG00000250337.8	ENST00000651409.1:ENST00000650981.1:ENST00000655107.1:ENST00000657375.2:ENST00000659077.1:ENST00000653835.1:ENST00000657173.1:ENST00000514844.6:ENST00000657424.1:ENST00000660307.1:ENST00000669423.1:ENST00000659860.1:ENST00000652841.1:ENST00000686605.1:ENST00000690628.1:ENST00000510165.6:ENST00000670554.1:ENST00000665451.1:ENST00000667624.1:ENST00000667420.1:ENST00000660639.1:ENST00000668406.1:ENST00000656783.1:ENST00000512067.5:ENST00000664566.1:ENST00000659489.1:ENST00000667264.1:ENST00000670840.1:ENST00000503107.2:ENST00000688783.1:ENST00000654039.1:ENST00000687778.1:ENST00000505775.5:ENST00000668103.1:ENST00000664501.1:ENST00000661698.1	lncRNA	lncRNA	lncRNA	lncRNA	6	93	2	2.20714	2.6479549999999996	3.08877	0.00493236	5.52878e-4	0.061186	0.021371
chr7	155775259	155775358	3453228	0	+	0.373737	(0.35,0.378]	chr7	322755	2	UTR3	UTR3:EXON_MRNA	RBM33	ENSG00000184863.11	ENST00000401878.8:ENST00000341148.7:ENST00000392755.2	protein_coding	protein_coding	protein_coding	protein_coding	13	190	2	2.20768	2.64788	3.08808	4.47925e-4	2.35937e-4	0.0191936	0.0140941
chr1	244702965	244703065	348212	0	+	0.43	(0.408,0.44]	chr1	40375	106	INTRON	INTRON	DESI2	ENSG00000121644.19	ENST00000263831.11:ENST00000302550.16	protein_coding	protein_coding	protein_coding	protein_coding	5	81	2	2.57365	2.6478650000000004	2.72208	0.00364449	0.00172241	0.0535094	0.0383099
chr7	107133973	107134072	3378063	0	+	0.373737	(0.35,0.378]	chr7	316264	53	INTRON	INTRON	PRKAR2B	ENSG00000005249.13	ENST00000265717.5:ENST00000393613.6:ENST00000488792.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	147	2	2.41342	2.6478599999999997	2.8823	6.38784e-4	5.41231e-4	0.0231685	0.0211001
chr15	99640665	99640764	6114899	0	+	0.515152	(0.476,0.515]	chr15	582076	71	INTRON	INTRON	MEF2A	ENSG00000068305.18	ENST00000560493.5:ENST00000354410.9:ENST00000558812.5:ENST00000558856.5:ENST00000685785.1:ENST00000559036.5:ENST00000557785.5:ENST00000558983.5:ENST00000557942.6:ENST00000338042.11:ENST00000558049.5:ENST00000449277.6:ENST00000690055.1:ENST00000691492.1:ENST00000686611.1:ENST00000559903.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	92	2	2.48917	2.64784	2.80651	0.00250121	0.00110233	0.0446195	0.03038
chr3	33388634	33388734	1651175	0	-	0.42	(0.408,0.44]	chr3	169319	4	UTR3	UTR3:EXON_MRNA	UBP1	ENSG00000153560.12	ENST00000283629.8:ENST00000492136.1:ENST00000447368.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	81	2	2.53861	2.64784	2.75707	0.00317496	0.00202413	0.0503542	0.0416117
chr6	36594673	36594755	2854414	0	+	0.573171	(0.57,1]	chr6	269767	2	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	SRSF3	ENSG00000112081.17	ENST00000613941.4:ENST00000373715.11:ENST00000620242.1:ENST00000339436.11:ENST00000477442.6:ENST00000620941.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	31	2	2.36411	2.647805	2.9315	0.0408868	9.1984e-4	0.161534	0.0278396
chr15	28676517	28676617	5988822	0	+	0.36	(0.35,0.378]	chr15	569406	21	INTRON	INTRON	HERC2P9	ENSG00000206149.11	ENST00000528584.5:ENST00000569226.1	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript	2	41	2	2.57049	2.64773	2.72497	0.0262669	0.0198266	0.133676	0.109608
chr6	122489834	122489934	2947849	0	+	0.36	(0.35,0.378]	chr6	277520	58	INTRON	INTRON	PKIB	ENSG00000135549.16	ENST00000615438.4:ENST00000392491.6:ENST00000607474.5:ENST00000608895.5:ENST00000618977.4:ENST00000583007.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	41	2	2.57049	2.64773	2.72497	0.0262669	0.0198266	0.133676	0.109608
chr7	105368852	105368952	3603705	0	-	0.37	(0.35,0.378]	chr7	336161	619	INTRON	INTRON	SRPK2	ENSG00000135250.17	ENST00000393651.8:ENST00000482897.5:ENST00000460391.5:ENST00000462282.5:ENST00000465112.5:ENST00000482862.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	41	2	2.57049	2.64773	2.72497	0.0262669	0.0198266	0.133676	0.109608
chr14	69614021	69614121	5775732	0	+	0.43	(0.408,0.44]	chr14	547295	18	INTRON	INTRON	SUSD6	ENSG00000100647.8	ENST00000342745.5:ENST00000553497.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	39	2	2.3975	2.647725	2.89795	0.040266	0.0110735	0.161534	0.0873897
chr3	47772116	47772216	1684979	0	-	0.52	(0.515,0.57]	chr3	172116	258	INTRON	INTRON	SMARCC1	ENSG00000173473.11	ENST00000254480.10:ENST00000425518.5:ENST00000454240.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	59	2	1.9888	2.647725	3.30665	0.00963364	0.00213226	0.086971	0.041756
chrX	45084591	45084687	7650748	0	+	0.416667	(0.408,0.44]	chrX	782841	6	INTRON	INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1:ENST00000675525.1:ENST00000414389.5:ENST00000675546.1:ENST00000676026.1:ENST00000484732.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	39	2	2.3975	2.647725	2.89795	0.040266	0.0110735	0.161534	0.0873897
chr7	50671851	50671950	3531450	0	-	0.444444	(0.44,0.476]	chr7	329452	16	INTRON	INTRON	GRB10	ENSG00000106070.20	ENST00000335866.7:ENST00000398812.6:ENST00000398810.6:ENST00000401949.6:ENST00000402578.5:ENST00000644769.1:ENST00000403097.6:ENST00000644879.1:ENST00000406641.5:ENST00000402497.6:ENST00000357271.9:ENST00000643299.1:ENST00000407526.6:ENST00000645075.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	38	2	2.20949	2.6477000000000004	3.08591	0.0672585	0.00481262	0.183051	0.0638089
chr4	70955886	70955985	1971043	0	+	0.383838	(0.378,0.408]	chr4	197584	47	INTRON	INTRON	MOB1B	ENSG00000173542.9	ENST00000502869.5:ENST00000509041.5:ENST00000309395.7:ENST00000396051.2:ENST00000511449.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	93	2	2.2403	2.64766	3.05502	0.00689519	0.00125943	0.0717484	0.03295
chr17	78675041	78675141	6844737	0	-	0.52	(0.515,0.57]	chr17	677248	11	UTR3	UTR3:EXON_MRNA	CYTH1	ENSG00000108669.17	ENST00000589296.5:ENST00000361101.8:ENST00000446868.8:ENST00000591455.5:ENST00000589297.5:ENST00000585509.5:ENST00000586299.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	59	2	1.84511	2.647625	3.45014	0.0167182	0.00116948	0.110511	0.0312127
chr5	109338449	109338548	2701646	0	-	0.50505	(0.476,0.515]	chr5	254312	7	INTRON	INTRON	PJA2	ENSG00000198961.10	ENST00000361557.4:ENST00000361189.7	protein_coding	protein_coding	protein_coding	protein_coding	5	69	2	1.58972	2.647625	3.70553	0.0427022	3.44823e-4	0.148082	0.0165103
chr16	47196904	47197004	6481044	0	-	0.38	(0.378,0.408]	chr16	626957	339	INTRON	INTRON	ITFG1	ENSG00000129636.13	ENST00000568047.5:ENST00000320640.11:ENST00000537184.6:ENST00000542691.5:ENST00000567957.1:ENST00000544001.6:ENST00000565262.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	54	2	2.43657	2.647555	2.85854	0.0107837	0.0106733	0.0920575	0.0861859
chr7	148824856	148824956	3670158	0	-	0.41	(0.408,0.44]	chr7	340580	41	INTRON	INTRON	EZH2	ENSG00000106462.12	ENST00000683292.1:ENST00000320356.7:ENST00000492143.5:ENST00000478654.5:ENST00000350995.6:ENST00000460911.5:ENST00000683744.1:ENST00000682317.1:ENST00000682263.1:ENST00000684300.1:ENST00000476773.5:ENST00000483967.5:ENST00000498186.5:ENST00000483012.1:ENST00000682401.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	135	2	2.34467	2.64737	2.95007	7.0284e-4	3.86745e-4	0.0241881	0.0182867
chr17	48999469	48999569	6624624	0	+	0.46	(0.44,0.476]	chr17	646592	3	SS5_PROX	SS5_PROX:INTRON	IGF2BP1	ENSG00000159217.10	ENST00000290341.8:ENST00000510023.5:ENST00000431824.2:ENST00000515586.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	67	2	2.42996	2.64724	2.86452	0.0104804	0.00159222	0.0855777	0.0367961
chr2	75884488	75884588	817004	0	+	0.35	(0.32,0.35]	chr2	91391	116	INTRON	INTRON	ENSG00000287474	ENSG00000287474.1	ENST00000670606.1	lncRNA	lncRNA	lncRNA	lncRNA	5	95	2	2.53107	2.6472350000000002	2.7634	0.00860484	8.19858e-4	0.0784134	0.026165
chr1	42955350	42955450	433113	0	-	0.54	(0.515,0.57]	chr1	52506	6	INTRON	INTRON	SLC2A1	ENSG00000117394.24	ENST00000426263.10:ENST00000630287.2:ENST00000675112.1:ENST00000674765.1:ENST00000625233.2:ENST00000372500.4:ENST00000415851.6:ENST00000630821.1:ENST00000460369.3:ENST00000676097.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	58	2	2.32967	2.64717	2.96467	0.0133671	8.94279e-4	0.0946278	0.0273458
chr2	32628205	32628292	733499	0	+	0.551724	(0.515,0.57]	chr2	84709	3	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	TTC27	ENSG00000018699.13	ENST00000448773.5:ENST00000317907.9:ENST00000647819.1:ENST00000454690.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	58	2	2.32967	2.64717	2.96467	0.0133671	8.94279e-4	0.0946278	0.0273458
chr17	31310904	31311004	6593354	0	+	0.46	(0.44,0.476]	chr17	641274	109	INTRON	INTRON	NF1	ENSG00000196712.20	ENST00000696138.1:ENST00000356175.7:ENST00000691014.1:ENST00000358273.9:ENST00000579081.5:ENST00000456735.6:ENST00000493220.5:ENST00000687863.1:ENST00000581113.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	67	2	2.55649	2.64715	2.73781	0.00670547	0.00276493	0.0707084	0.04867
chr3	12577340	12577439	1368088	0	+	0.282828	(0.28,0.32]	chr3	144101	2	INTRON	INTRON	MKRN2	ENSG00000075975.17	ENST00000677816.1:ENST00000677941.1:ENST00000676544.1:ENST00000677237.1:ENST00000679143.1:ENST00000676701.1:ENST00000170447.12:ENST00000411987.5:ENST00000448482.1:ENST00000677142.1:ENST00000676541.1:ENST00000677798.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	63	2	2.51426	2.64715	2.78004	0.0193244	0.00781326	0.108861	0.0788246
chr21	39221830	39221929	7464595	0	-	0.444444	(0.44,0.476]	chr21	760426	28	INTRON	INTRON	BRWD1	ENSG00000185658.14	ENST00000333229.6:ENST00000342449.8:ENST00000446924.5:ENST00000380800.7:ENST00000424441.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	69	2	2.13779	2.64709	3.15639	0.0264596	3.93757e-4	0.122506	0.0178567
chr6	57110809	57110908	2878266	0	+	0.383838	(0.378,0.408]	chr6	273249	12	INTRON	INTRON	ZNF451	ENSG00000112200.17	ENST00000515290.5:ENST00000510483.5:ENST00000357489.7:ENST00000370702.5:ENST00000444273.6:ENST00000370711.9:ENST00000370706.9:ENST00000491832.6:ENST00000502749.1:ENST00000504603.1:ENST00000509071.5:ENST00000509251.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	52	2	2.56408	2.647005	2.72993	0.0188736	0.00566993	0.108861	0.0678837
chr7	152826917	152827016	3451200	0	+	0.393939	(0.378,0.408]	chr7	322567	14	INTRON	INTRON	ACTR3B	ENSG00000133627.18	ENST00000377776.7:ENST00000256001.13:ENST00000397282.2:ENST00000479402.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	52	2	2.56408	2.647005	2.72993	0.0188736	0.00566993	0.108861	0.0678837
chr3	198189924	198190012	1600061	0	+	0.397727	(0.378,0.408]	chr3	165889	2	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	FAM157A	ENSG00000236438.7	ENST00000634862.1:ENST00000615155.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	12	194	2	2.36489	2.646995	2.9291	4.21948e-4	8.6973e-5	0.0183838	0.00838464
chr5	127027324	127027423	2714526	0	-	0.444444	(0.44,0.476]	chr5	255278	806	INTRON	INTRON	MARCHF3	ENSG00000173926.6	ENST00000308660.6:ENST00000502289.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	38	2	2.49112	2.646935	2.80275	0.0315968	0.0146513	0.144381	0.0982604
chr14	27617337	27617437	5849025	0	-	0.39	(0.378,0.408]	chr14	556260	2948	INTRON	INTRON	ENSG00000258932	ENSG00000258932.5	ENST00000553392.5:ENST00000554904.5:ENST00000556890.1:ENST00000555797.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	4	63	2	1.73164	2.64686	3.56208	0.0441773	6.94246e-4	0.149888	0.0240761
chr21	14545305	14545405	7428195	0	-	0.3	(0.28,0.32]	chr21	757769	216	INTRON	INTRON	SAMSN1	ENSG00000155307.19	ENST00000647101.1:ENST00000644288.1:ENST00000400564.5:ENST00000400566.6:ENST00000285670.7:ENST00000619120.4:ENST00000493640.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	116	2	1.86208	2.64683	3.43158	0.0065898	0.00244075	0.0737338	0.0445752
chr11	57816308	57816406	4793707	0	+	0.387755	(0.378,0.408]	chr11	443826	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ENSG00000288534:CTNND1	ENSG00000288534.1:ENSG00000198561.16	ENST00000673781.1:ENST00000673810.1:ENST00000674116.1:ENST00000674060.1:ENST00000524630.5:ENST00000529919.5:ENST00000682741.1:ENST00000358694.10:ENST00000361332.8:ENST00000361391.10:ENST00000361796.9:ENST00000415361.6:ENST00000426142.6:ENST00000428599.6:ENST00000525902.5:ENST00000526357.5:ENST00000526772.5:ENST00000527467.5:ENST00000528232.5:ENST00000528621.5:ENST00000529526.5:ENST00000529873.5:ENST00000529986.5:ENST00000530094.5:ENST00000530748.5:ENST00000531014.5:ENST00000532245.5:ENST00000532463.5:ENST00000532649.5:ENST00000532787.5:ENST00000532844.5:ENST00000533667.5:ENST00000534579.5:ENST00000399050.10:ENST00000526938.5:ENST00000531007.2:ENST00000674015.1:ENST00000673826.1:ENST00000673683.1:ENST00000674106.1:ENST00000681984.1:ENST00000683906.1:ENST00000673661.1:ENST00000682621.1:ENST00000683201.1:ENST00000682974.1:ENST00000684035.1:ENST00000683510.1:ENST00000683769.1:ENST00000684704.1:ENST00000525821.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	147	2	2.48561	2.6467349999999996	2.80786	0.00159433	9.26992e-5	0.0364566	0.00805823
chr16	8851943	8852041	6285212	0	+	0.428571	(0.408,0.44]	chr16	601873	5	INTRON	INTRON	PMM2	ENSG00000140650.13	ENST00000683094.1:ENST00000683274.1:ENST00000682393.1:ENST00000683761.1:ENST00000565934.2	protein_coding	retained_intron	protein_coding	retained_intron:nonsense_mediated_decay	5	69	2	1.84301	2.6466000000000003	3.45019	0.0174311	0.00152664	0.112689	0.0353936
chr12	122515627	122515727	5442135	0	-	0.32	(0.28,0.32]	chr12	520567	4	SS3_PROX	SS3_PROX:INTRON	RSRC2	ENSG00000111011.18	ENST00000331738.12:ENST00000532695.5:ENST00000433877.6:ENST00000527173.6:ENST00000525335.6:ENST00000344591.8:ENST00000528263.1:ENST00000527399.3:ENST00000524399.1:ENST00000527796.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	82	2	2.57195	2.6465899999999998	2.72123	0.0331711	0.00112621	0.133994	0.0308424
chr5	91374509	91374598	2674897	0	-	0.247191	[0,0.28]	chr5	253094	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ARRDC3	ENSG00000113369.9	ENST00000265138.4:ENST00000505631.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	98	2	2.30641	2.64658	2.98675	0.0213596	0.00144853	0.113755	0.0349199
chr6	85620015	85620113	3151215	0	-	0.561224	(0.515,0.57]	chr6	293877	2	INTRON	INTRON	ENSG00000271793:SYNCRIP	ENSG00000271793.2:ENSG00000135316.19	ENST00000682083.1:ENST00000683074.1:ENST00000681965.1:ENST00000682504.1:ENST00000682106.1:ENST00000683364.1:ENST00000683436.1:ENST00000684220.1:ENST00000683909.1:ENST00000684462.1:ENST00000616122.5:ENST00000678528.1:ENST00000676637.1:ENST00000677771.1:ENST00000355238.11:ENST00000678878.1:ENST00000677481.1:ENST00000677646.1:ENST00000676630.1:ENST00000678618.1:ENST00000676542.1:ENST00000677059.1:ENST00000444272.2:ENST00000678899.1:ENST00000369622.8:ENST00000678355.1:ENST00000676688.1:ENST00000677514.1:ENST00000678816.1:ENST00000678930.1:ENST00000678589.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	20	261	2	2.41167	2.6465199999999998	2.88137	6.22084e-5	7.39562e-6	0.00655977	0.00205092
chr6	31746701	31746793	2843554	0	+	0.554348	(0.515,0.57]	chr6	267796	5	INTRON	INTRON	MSH5:MSH5-SAPCD1	ENSG00000204410.16:ENSG00000255152.8	ENST00000375755.8:ENST00000375750.9:ENST00000650702.1:ENST00000493662.6:ENST00000375703.7:ENST00000375740.7:ENST00000423982.6:ENST00000463144.5:ENST00000450148.5:ENST00000497269.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	139	2	2.08424	2.646515	3.20879	8.573e-4	6.40762e-5	0.0265787	0.00711194
chr16	10386864	10386957	6286282	0	+	0.376344	(0.35,0.378]	chr16	601953	9	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	ATF7IP2	ENSG00000166669.14	ENST00000564797.5:ENST00000396559.5:ENST00000396560.6:ENST00000562527.5:ENST00000561932.5:ENST00000566316.5:ENST00000543967.5:ENST00000562102.6:ENST00000535850.5:ENST00000569900.5:ENST00000569939.5:ENST00000562396.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	13	205	2	2.17118	2.6463799999999997	3.12158	7.06266e-4	7.38607e-5	0.0241881	0.00770735
chr8	123337324	123337424	4042021	0	-	0.39	(0.378,0.408]	chr8	368675	3	SS5_PROX	SS5_PROX:INTRON	ATAD2	ENSG00000156802.13	ENST00000287394.10:ENST00000517666.5:ENST00000521903.5:ENST00000519124.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	151	2	1.85844	2.64629	3.43414	0.00712194	1.53753e-5	0.0723634	0.00294585
chr20	47555894	47555994	7281537	0	+	0.5	(0.476,0.515]	chr20	740469	535	INTRON	INTRON	NCOA3	ENSG00000124151.19	ENST00000371998.8:ENST00000372004.7:ENST00000371997.3	protein_coding	protein_coding	protein_coding	protein_coding	2	37	2	2.48527	2.64628	2.80729	0.03496	0.0126008	0.13747500000000001	0.0980703
chr7	99093101	99093201	3582633	0	-	0.48	(0.476,0.515]	chr7	333700	118	INTRON	INTRON	SMURF1	ENSG00000198742.10	ENST00000361368.7:ENST00000361125.1:ENST00000472627.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	37	2	2.48527	2.64628	2.80729	0.03496	0.0126008	0.13747500000000001	0.0980703
chr7	101927965	101928064	3367472	0	+	0.50505	(0.476,0.515]	chr7	315225	114	INTRON	INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000497815.5:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000558469.5:ENST00000560541.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	37	2	2.48527	2.64628	2.80729	0.03496	0.0126008	0.13747500000000001	0.0980703
chr9	131190428	131190480	4216297	0	+	0.403846	(0.378,0.408]	chr9	386644	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	NUP214	ENSG00000126883.19	ENST00000695497.1:ENST00000695498.1:ENST00000695496.1:ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000525980.5:ENST00000526346.5:ENST00000531929.5:ENST00000651334.1:ENST00000524578.6:ENST00000453861.6:ENST00000470765.5:ENST00000483497.6:ENST00000465486.6:ENST00000531600.1:ENST00000528114.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	132	2	2.54813	2.646235	2.74434	0.00119772	2.94671e-4	0.0315806	0.0153497
chr12	101828658	101828758	5398961	0	-	0.49	(0.476,0.515]	chr12	514990	176	INTRON	INTRON	GNPTAB	ENSG00000111670.16	ENST00000299314.12:ENST00000549940.5:ENST00000647144.1:ENST00000392919.4:ENST00000549165.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	37	2	2.56033	2.64619	2.73205	0.0287634	0.0159328	0.127066	0.109464
chr2	87801290	87801388	1172950	0	-	0.489796	(0.476,0.515]	chr2	125238	2	INTRON	INTRON	RGPD2	ENSG00000185304.16	ENST00000398146.5	protein_coding	protein_coding	protein_coding	protein_coding	2	37	2	2.56033	2.64619	2.73205	0.0287634	0.0159328	0.127066	0.109464
chr22	43170463	43170558	7598516	0	-	0.494737	(0.476,0.515]	chr22	778248	3	INTRON	INTRON	TTLL12	ENSG00000100304.13	ENST00000216129.7:ENST00000494035.1	protein_coding	protein_coding	protein_coding	protein_coding	2	37	2	2.56033	2.64619	2.73205	0.0287634	0.0159328	0.127066	0.109464
chr3	99912323	99912423	1462845	0	+	0.48	(0.476,0.515]	chr3	153488	939	INTRON	INTRON	CMSS1	ENSG00000184220.12	ENST00000463526.1:ENST00000421999.8:ENST00000491299.5:ENST00000496116.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	37	2	2.56033	2.64619	2.73205	0.0287634	0.0159328	0.127066	0.109464
chr7	156848881	156848981	3687575	0	-	0.38	(0.378,0.408]	chr7	342096	116	INTRON	INTRON	LMBR1	ENSG00000105983.23	ENST00000353442.10:ENST00000415428.5:ENST00000454132.5:ENST00000434503.5:ENST00000430278.5:ENST00000434278.5:ENST00000444719.5:ENST00000461469.5:ENST00000414218.1:ENST00000434453.1:ENST00000498034.5:ENST00000433968.5:ENST00000485985.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	64	2	1.53052	2.646135	3.76175	0.0744544	2.68579e-4	0.192012	0.0145349
chr6	7121079	7121178	2798496	0	+	0.454545	(0.44,0.476]	chr6	263723	120	INTRON	INTRON	RREB1	ENSG00000124782.21	ENST00000379933.7:ENST00000491191.5:ENST00000471433.5:ENST00000379938.7:ENST00000467782.5:ENST00000349384.10:ENST00000334984.10:ENST00000475946.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	103	2	2.00922	2.6460150000000002	3.28281	0.0068301	2.0352e-4	0.0713163	0.0124395
chr20	47648704	47648804	7282487	0	+	0.43	(0.408,0.44]	chr20	740567	3	SS3_PROX	SS3_PROX:INTRON	NCOA3	ENSG00000124151.19	ENST00000371998.8:ENST00000372004.7:ENST00000371997.3	protein_coding	protein_coding	protein_coding	protein_coding	6	77	2	1.96132	2.645995	3.33067	0.00701866	0.0024459	0.0754576	0.0445752
chr12	70284405	70284503	5166844	0	+	0.459184	(0.44,0.476]	chr12	489381	58	INTRON	INTRON	CNOT2	ENSG00000111596.14	ENST00000547780.5:ENST00000418359.7:ENST00000552319.5:ENST00000550160.5:ENST00000551661.5:ENST00000551132.5:ENST00000553078.5:ENST00000548021.5:ENST00000550641.6:ENST00000229195.8:ENST00000552915.5:ENST00000549443.5:ENST00000548741.5:ENST00000552483.5:ENST00000552422.5:ENST00000547321.5:ENST00000553020.5:ENST00000548159.5:ENST00000549750.5:ENST00000551043.5:ENST00000548599.5:ENST00000550194.5:ENST00000551873.5:ENST00000547867.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	78	2	2.11598	2.6458500000000003	3.17572	0.00427037	0.0035604	0.0573912	0.0548355
chr3	47129660	47129760	1681261	0	-	0.5	(0.476,0.515]	chr3	171624	26	INTRON	INTRON	SETD2	ENSG00000181555.22	ENST00000691544.1:ENST00000638947.2:ENST00000409792.4:ENST00000412450.1	protein_coding	protein_coding	protein_coding	protein_coding	14	206	2	2.37023	2.645765	2.9213	1.96149e-4	7.30508e-5	0.0122528	0.00767614
chr1	245981594	245981694	675446	0	-	0.33	(0.32,0.35]	chr1	79709	256	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000493441.5:ENST00000488153.5:ENST00000492487.5:ENST00000391836.3:ENST00000464398.1:ENST00000453676.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	43	2	2.4458	2.645745	2.84569	0.0425977	0.0121137	0.148082	0.0962599
chr2	61413572	61413671	1129980	0	-	0.484848	(0.476,0.515]	chr2	121491	71	INTRON	INTRON	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000453133.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	50	2	1.99197	2.64568	3.29939	0.039572	0.00211868	0.143072	0.0425644
chr1	185141692	185141789	603300	0	-	0.340206	(0.32,0.35]	chr1	71823	11	INTRON	INTRON	TRMT1L	ENSG00000121486.12	ENST00000367506.10	protein_coding	protein_coding	protein_coding	protein_coding	2	43	2	2.51061	2.64567	2.78073	0.0364463	0.01481	0.138959	0.106702
chr17	13558242	13558342	6727144	0	-	0.33	(0.32,0.35]	chr17	660143	23	INTRON	INTRON	HS3ST3A1	ENSG00000153976.3	ENST00000284110.2	protein_coding	protein_coding	protein_coding	protein_coding	2	43	2	2.51061	2.64567	2.78073	0.0364463	0.01481	0.138959	0.106702
chrX	103685945	103686037	7856575	0	-	0.358696	(0.35,0.378]	chrX	801096	3	INTRON	INTRON	MORF4L2	ENSG00000123562.18	ENST00000360458.5:ENST00000441076.7:ENST00000433176.6:ENST00000451301.5:ENST00000434230.5:ENST00000418819.5:ENST00000442614.5:ENST00000492116.5:ENST00000422355.5:ENST00000498064.1:ENST00000467755.5:ENST00000488331.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	75	2	2.11889	2.645665	3.17244	0.00625927	0.00487788	0.0720609	0.0607461
chr7	111538578	111538678	3623877	0	-	0.38	(0.378,0.408]	chr7	337133	56	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000452895.5:ENST00000447215.5:ENST00000492938.1:ENST00000452753.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	63	2	1.89251	2.645615	3.39872	0.0251428	0.0019852	0.133404	0.0404516
chr9	26892158	26892258	4237610	0	-	0.38	(0.378,0.408]	chr9	389572	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	CAAP1	ENSG00000120159.13	ENST00000333916.8:ENST00000650615.1:ENST00000625311.1:ENST00000520187.1:ENST00000483493.6:ENST00000495958.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	63	2	1.89251	2.645615	3.39872	0.0251428	0.0019852	0.133404	0.0404516
chr3	9987714	9987814	1361973	0	+	0.3	(0.28,0.32]	chr3	143379	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	EMC3-AS1	ENSG00000180385.9	ENST00000692142.1:ENST00000366264.6:ENST00000693066.1:ENST00000326237.3:ENST00000440568.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	4	86	2	2.63379	2.6455599999999997	2.65733	0.0061571	0.00503861	0.0676501	0.0646039
chr22	46669503	46669598	7535063	0	+	0.326316	(0.32,0.35]	chr22	770488	2	INTRON	INTRON	GRAMD4	ENSG00000075240.17	ENST00000406902.6:ENST00000361034.7:ENST00000456069.1	protein_coding	protein_coding	protein_coding	protein_coding	3	59	2	2.2664	2.64555	3.0247	0.0199969	0.00671684	0.109608	0.0738715
chr22	35880070	35880170	7582511	0	-	0.54	(0.515,0.57]	chr22	775894	396	INTRON	INTRON	RBFOX2	ENSG00000100320.24	ENST00000438146.7:ENST00000695854.1:ENST00000359369.8:ENST00000695807.1:ENST00000408983.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	43	2	2.45585	2.64543	2.83501	0.0117686	0.00797827	0.0894475	0.0798772
chr7	152416237	152416337	3681096	0	-	0.54	(0.515,0.57]	chr7	341660	572	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000682301.1:ENST00000452749.2:ENST00000680867.1:ENST00000683800.1:ENST00000684278.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	43	2	2.45585	2.64543	2.83501	0.0117686	0.00797827	0.0894475	0.0798772
chr11	66621338	66621438	4810846	0	+	0.42	(0.408,0.44]	chr11	447860	4	SS5_PROX	SS5_PROX:INTRON	RBM14-RBM4:RBM14	ENSG00000248643.5:ENSG00000239306.5	ENST00000412278.2:ENST00000393979.3:ENST00000511114.1:ENST00000310137.5:ENST00000409372.1:ENST00000421355.1:ENST00000443702.1:ENST00000500635.2:ENST00000409738.4:ENST00000461478.1:ENST00000496694.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	20	294	2	2.00319	2.6453550000000003	3.28752	0.00114474	8.29566e-7	0.0308149	5.16308e-4
chrX	123638623	123638693	7878093	0	-	0.414286	(0.408,0.44]	chrX	802502	1	SS5_PROX	SS5_PROX:INTRON	THOC2	ENSG00000125676.20	ENST00000245838.13:ENST00000355725.8:ENST00000491737.5	protein_coding	protein_coding	protein_coding	protein_coding	5	81	2	2.64127	2.645355	2.64944	0.00481947	0.00125199	0.060277	0.0328543
chr10	45992336	45992436	4430585	0	+	0.41	(0.408,0.44]	chr10	408492	31	INTRON	INTRON	TIMM23	ENSG00000265354.4	ENST00000580018.4	protein_coding	protein_coding	protein_coding	protein_coding	5	82	2	2.00629	2.6453499999999996	3.28441	0.0189661	2.01433e-4	0.108861	0.0124157
chr10	21708487	21708587	4406175	0	+	0.3	(0.28,0.32]	chr10	406539	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	MLLT10	ENSG00000078403.17	ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000651298.1:ENST00000377059.7:ENST00000651382.1:ENST00000438473.6:ENST00000420525.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	76	2	1.98806	2.645345	3.30263	0.0199553	0.0038504	0.120668	0.0542786
chr15	28197697	28197787	6122766	0	-	0.533333	(0.515,0.57]	chr15	583159	8	INTRON	INTRON	HERC2	ENSG00000128731.18	ENST00000261609.13:ENST00000567869.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	43	2	2.26012	2.645245	3.03037	0.0160033	0.00608732	0.109464	0.0676501
chr20	47333357	47333457	7349278	0	-	0.52	(0.515,0.57]	chr20	749346	144	INTRON	INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000435836.5:ENST00000446894.5:ENST00000441977.1	protein_coding	protein_coding	protein_coding	protein_coding	3	43	2	2.26012	2.645245	3.03037	0.0160033	0.00608732	0.109464	0.0676501
chr1	6598546	6598646	368206	0	-	0.43	(0.408,0.44]	chr1	43254	1	SS5_PROX	SS5_PROX:INTRON	KLHL21	ENSG00000162413.17	ENST00000377663.3:ENST00000377658.8:ENST00000467612.5:ENST00000496707.5:ENST00000463043.1	protein_coding	protein_coding	protein_coding	protein_coding	5	81	2	2.46587	2.64524	2.82461	0.00280622	0.00241819	0.0488779	0.0442901
chr8	26314507	26314607	3716326	0	+	0.39	(0.378,0.408]	chr8	345372	95	INTRON	INTRON	PPP2R2A	ENSG00000221914.11	ENST00000380737.8:ENST00000520329.5:ENST00000518254.5:ENST00000524169.5:ENST00000518397.5:ENST00000522535.5:ENST00000665949.1:ENST00000522150.5:ENST00000523473.5:ENST00000521095.5:ENST00000660435.1:ENST00000523925.5:ENST00000524099.5:ENST00000315985.7:ENST00000519636.5:ENST00000522482.5:ENST00000521557.5:ENST00000519439.5:ENST00000521484.5:ENST00000523964.5:ENST00000667651.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	89	2	2.21238	2.64511	3.07784	0.0218124	1.31892e-4	0.11491	0.00990163
chr19	53077312	53077412	7210301	0	-	0.46	(0.44,0.476]	chr19	731873	5	EXON_LNCRNA	EXON_LNCRNA:INTRON	ZNF160	ENSG00000170949.18	ENST00000599056.5:ENST00000418871.5:ENST00000429604.5:ENST00000683776.1:ENST00000599247.5:ENST00000601982.5:ENST00000355147.9:ENST00000599729.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	76	2	1.85696	2.6450050000000003	3.43305	0.0107727	0.00159668	0.0920575	0.0364566
chr3	195697281	195697377	1593844	0	+	0.5	(0.476,0.515]	chr3	165103	3	INTRON	INTRON	MUC20-OT1	ENSG00000242086.8	ENST00000451982.6:ENST00000628917.2:ENST00000625358.2:ENST00000602127.5:ENST00000627502.2:ENST00000597034.5:ENST00000629823.2:ENST00000630243.2:ENST00000627718.2:ENST00000631366.2:ENST00000630170.2:ENST00000626569.2:ENST00000631189.2:ENST00000599448.5:ENST00000597482.5:ENST00000598992.5:ENST00000420851.6:ENST00000626870.2:ENST00000630417.2:ENST00000627152.2:ENST00000594715.5:ENST00000431767.5:ENST00000630863.2:ENST00000629686.2:ENST00000627562.2:ENST00000628547.2:ENST00000627363.2:ENST00000631105.2:ENST00000628823.2:ENST00000625776.2:ENST00000451228.5:ENST00000451216.6:ENST00000626617.2:ENST00000628301.2:ENST00000626178.2:ENST00000620737.3:ENST00000626007.2	lncRNA	lncRNA	lncRNA	lncRNA	3	51	2	2.41121	2.645	2.87879	0.0110342	0.00999149	0.0879541	0.0873897
chr9	133363079	133363175	4370307	0	-	0.427083	(0.408,0.44]	chr9	402163	18	UTR3	UTR3:EXON_MRNA	SURF4	ENSG00000148248.14	ENST00000545297.5:ENST00000613129.4:ENST00000618229.4:ENST00000371989.8:ENST00000485435.6	protein_coding	protein_coding	protein_coding	protein_coding	5	70	2	1.73753	2.6448400000000003	3.55215	0.0275537	7.01039e-4	0.123904	0.0241881
chr1	50784903	50785003	450499	0	-	0.42	(0.408,0.44]	chr1	54249	398	INTRON	INTRON	FAF1	ENSG00000185104.21	ENST00000396153.7:ENST00000487898.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	50	2	2.39162	2.6447849999999997	2.89795	0.0110735	0.0105837	0.0911864	0.0873897
chr10	68909606	68909706	4443098	0	+	0.44	(0.408,0.44]	chr10	409748	22	INTRON	INTRON	DDX50	ENSG00000107625.14	ENST00000483593.5:ENST00000373585.8:ENST00000471475.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	50	2	2.39162	2.6447849999999997	2.89795	0.0110735	0.0105837	0.0911864	0.0873897
chr18	77973864	77973964	6990093	0	-	0.63	(0.57,1]	chr18	691890	6	INTRON	INTRON	LINC01029	ENSG00000265843.3	ENST00000657337.1:ENST00000669341.1:ENST00000671271.1:ENST00000668585.1:ENST00000666771.1:ENST00000667842.1:ENST00000661306.1:ENST00000662598.1:ENST00000662109.1:ENST00000662085.1:ENST00000583106.1:ENST00000582805.1	lncRNA	lncRNA	lncRNA	lncRNA	8	65	2	2.10552	2.64475	3.18398	0.00330145	3.84422e-5	0.0527031	0.00528498
chr12	64442095	64442194	5153286	0	+	0.444444	(0.44,0.476]	chr12	487839	24	INTRON	INTRON	XPOT	ENSG00000184575.12	ENST00000332707.10	protein_coding	protein_coding	protein_coding	protein_coding	3	50	2	2.21079	2.644705	3.07862	0.0194581	0.0060153	0.119831	0.0674604
chr7	128626114	128626194	3408319	0	+	0.4625	(0.44,0.476]	chr7	318411	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ENSG00000242588	ENSG00000242588.6	ENST00000605862.5	lncRNA	lncRNA	lncRNA	lncRNA	3	50	2	2.21079	2.644705	3.07862	0.0194581	0.0060153	0.119831	0.0674604
chr5	36876205	36876304	2601883	0	-	0.565657	(0.515,0.57]	chr5	247327	50	EXON_LNCRNA	EXON_LNCRNA	NIPBL-DT	ENSG00000285967.1	ENST00000647750.1:ENST00000649921.1:ENST00000647824.1	lncRNA	lncRNA	lncRNA	lncRNA	7	88	2	2.36888	2.644665	2.92045	0.00128922	9.15531e-4	0.0328334	0.027822
chr10	5715785	5715883	4384658	0	+	0.44898	(0.44,0.476]	chr10	404489	12	INTRON	INTRON	TASOR2	ENSG00000108021.21	ENST00000695832.1:ENST00000328090.9:ENST00000695737.1:ENST00000695833.1:ENST00000695834.1:ENST00000695835.1:ENST00000695836.1:ENST00000496681.5:ENST00000480839.6:ENST00000645567.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	67	2	2.59632	2.6446449999999997	2.69297	0.00579248	0.00333494	0.0662959	0.0528877
chr11	2968610	2968709	4891752	0	-	0.40404	(0.378,0.408]	chr11	458317	35	INTRON	INTRON	NAP1L4	ENSG00000205531.13	ENST00000620138.4:ENST00000380542.9:ENST00000526115.5:ENST00000492685.5:ENST00000532325.6:ENST00000448187.5:ENST00000399614.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	70	2	2.30628	2.644615	2.98295	0.0163339	9.47389e-4	0.101571	0.0282007
chr1	89525422	89525522	157404	0	+	0.54	(0.515,0.57]	chr1	17158	4	SS5_PROX	SS5_PROX:INTRON	LRRC8B	ENSG00000197147.15	ENST00000330947.7:ENST00000439853.6:ENST00000449440.5:ENST00000640258.1:ENST00000639264.1	protein_coding	protein_coding	protein_coding	protein_coding	5	59	2	2.03368	2.6445749999999997	3.25547	0.00803127	0.00261721	0.0803474	0.0455413
chrX	3911118	3911218	7747707	0	-	0.54	(0.515,0.57]	chrX	793160	45	INTRON	INTRON	ENSG00000285756	ENSG00000285756.2	ENST00000650538.1:ENST00000381106.4	lncRNA	lncRNA	lncRNA	lncRNA	3	44	2	2.03361	2.64454	3.25547	0.0325854	0.00261721	0.145164	0.0455413
chr10	70163183	70163259	4640820	0	-	0.289474	(0.28,0.32]	chr10	426907	3	SS3_PROX	SS3_PROX:INTRON	SAR1A	ENSG00000079332.15	ENST00000373242.6:ENST00000373241.9:ENST00000373239.2	protein_coding	protein_coding	protein_coding	protein_coding	5	103	2	2.56765	2.64444	2.72123	0.00835086	0.00112621	0.0774402	0.0308424
chr2	159765836	159765931	900028	0	+	0.284211	(0.28,0.32]	chr2	99576	8	INTRON	INTRON	MARCHF7	ENSG00000136536.15	ENST00000539065.5:ENST00000259050.8:ENST00000409175.6:ENST00000409591.5:ENST00000420397.1:ENST00000478396.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	89	2	1.60333	2.6443849999999998	3.68544	0.0413158	9.30275e-4	0.161534	0.0279637
chr10	116894435	116894534	4699375	0	-	0.363636	(0.35,0.378]	chr10	433605	75	INTRON	INTRON	SHTN1	ENSG00000187164.20	ENST00000355371.9:ENST00000615301.4:ENST00000260777.14:ENST00000497044.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	55	2	1.87717	2.64428	3.41139	0.0555068	0.00143263	0.165463	0.0347139
chr16	90137762	90137839	6424252	0	+	0.363636	(0.35,0.378]	chr16	617208	2	EXON_LNCRNA	EXON_LNCRNA:INTRON	FAM157C	ENSG00000260528.6	ENST00000563357.1:ENST00000660047.1:ENST00000568070.1	lncRNA	lncRNA	lncRNA	lncRNA	13	221	2	2.51124	2.64425	2.77726	3.65936e-4	6.56717e-5	0.0177655	0.0067007
chr8	97653478	97653578	3809152	0	+	0.37	(0.35,0.378]	chr8	352836	82	INTRON	INTRON	MTDH	ENSG00000147649.10	ENST00000336273.8:ENST00000519934.5:ENST00000522313.1	protein_coding	protein_coding	protein_coding	protein_coding	4	73	2	2.4475	2.6440349999999997	2.84057	0.0106974	0.00189462	0.0862205	0.0402736
chr11	65457960	65458059	4806031	0	+	0.292929	(0.28,0.32]	chr11	446565	12	INTRON	INTRON	ENSG00000173727	ENSG00000173727.13	ENST00000309775.8	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	2	48	2	2.46018	2.643935	2.82769	0.0375904	0.0169391	0.156054	0.103888
chr9	4799710	4799810	4094933	0	+	0.36	(0.35,0.378]	chr9	373155	61	INTRON	INTRON	RCL1	ENSG00000120158.12	ENST00000381750.9:ENST00000381732.3:ENST00000442869.5:ENST00000473230.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	55	2	2.23651	2.643935	3.05136	0.020879	0.00578894	0.111766	0.0684334
chr3	179328751	179328851	1566817	0	+	0.4	(0.378,0.408]	chr3	162034	4	SS5_PROX	SS5_PROX:INTRON	ZNF639	ENSG00000121864.10	ENST00000496856.6:ENST00000491818.5:ENST00000481587.5:ENST00000326361.7:ENST00000466264.5:ENST00000484866.5:ENST00000494234.5:ENST00000483460.5:ENST00000621687.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	62	2	2.18512	2.64393	3.10274	0.00902136	0.00586642	0.0851259	0.0668095
chr1	205745874	205745974	623847	0	-	0.2	[0,0.28]	chr1	74198	147	INTRON	INTRON	NUCKS1	ENSG00000069275.13	ENST00000367142.5	protein_coding	protein_coding	protein_coding	protein_coding	2	53	2	2.33055	2.64392	2.95729	0.062338	0.0101824	0.175343	0.089002
chr7	75447216	75447316	3558539	0	-	0.24	[0,0.28]	chr7	331545	46	INTRON	INTRON	POM121C	ENSG00000272391.6	ENST00000615331.5:ENST00000398379.2	protein_coding	protein_coding	protein_coding	protein_coding	2	53	2	2.33055	2.64392	2.95729	0.062338	0.0101824	0.175343	0.089002
chr19	21174753	21174852	7040289	0	+	0.393939	(0.378,0.408]	chr19	701950	45	INTRON	INTRON	ZNF431	ENSG00000196705.8	ENST00000600692.5:ENST00000599296.5:ENST00000594425.5:ENST00000311048.11:ENST00000598331.1	protein_coding	protein_coding	protein_coding	protein_coding	4	63	2	1.90812	2.64391	3.3797	0.0264295	0.00154501	0.122506	0.0362716
chr19	34210545	34210644	7051189	0	+	0.40404	(0.378,0.408]	chr19	703209	11	INTRON	INTRON	LSM14A	ENSG00000257103.9	ENST00000544216.8:ENST00000540746.6:ENST00000433627.9:ENST00000586157.2:ENST00000588582.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	63	2	1.90812	2.64391	3.3797	0.0264295	0.00154501	0.122506	0.0362716
chr20	31709755	31709855	7325241	0	-	0.52	(0.515,0.57]	chr20	745996	248	INTRON	INTRON	BCL2L1	ENSG00000171552.14	ENST00000376055.9:ENST00000376062.6:ENST00000307677.5:ENST00000420488.6:ENST00000439267.2:ENST00000678563.1:ENST00000456404.6:ENST00000676942.1:ENST00000676582.1:ENST00000434194.2:ENST00000677194.1:ENST00000678671.1:ENST00000677494.1:ENST00000422920.2:ENST00000450273.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	67	2	1.75695	2.6439	3.53085	0.016156	6.59951e-4	0.101453	0.0232396
chr13	32523562	32523661	5572700	0	-	0.575758	(0.57,1]	chr13	532565	14	EXON_MRNA	EXON_MRNA:INTRON	N4BP2L2	ENSG00000244754.9	ENST00000357505.10:ENST00000399396.7:ENST00000504114.5:ENST00000446957.6:ENST00000674456.1:ENST00000674161.1:ENST00000674422.1:ENST00000674272.1:ENST00000674452.1:ENST00000674384.1:ENST00000505213.5:ENST00000674219.1:ENST00000267068.5:ENST00000674349.1:ENST00000674428.1:ENST00000503814.2:ENST00000674465.1:ENST00000674421.1:ENST00000674180.1:ENST00000674297.1:ENST00000674293.1:ENST00000674480.1:ENST00000674377.1:ENST00000674437.1:ENST00000674327.1:ENST00000674399.1:ENST00000674196.1:ENST00000674163.1:ENST00000511143.5:ENST00000674484.1:ENST00000475731.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	42	2	1.42298	2.64379	3.8646	0.0510995	8.0672e-5	0.176696	0.00804467
chr11	3746841	3746941	4894655	0	-	0.48	(0.476,0.515]	chr11	458870	18	INTRON	INTRON	NUP98	ENSG00000110713.17	ENST00000359171.8:ENST00000324932.12:ENST00000650171.1:ENST00000355260.7:ENST00000397004.8:ENST00000397007.8:ENST00000527104.5:ENST00000529379.1:ENST00000397013.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	80	2	2.62645	2.6437850000000003	2.66112	0.0044598	0.00135678	0.0592169	0.0339121
chr19	3574686	3574764	7001036	0	+	0.410256	(0.408,0.44]	chr19	694324	1	SS5_PROX	SS5_PROX:INTRON	HMG20B	ENSG00000064961.19	ENST00000416526.5:ENST00000333651.11:ENST00000417382.5:ENST00000453933.5:ENST00000488973.6:ENST00000435022.5:ENST00000262949.7:ENST00000486028.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	50	2	2.44674	2.643755	2.84077	0.0132196	0.00868283	0.0940535	0.0842798
chr22	40184937	40185037	7518254	0	+	0.41	(0.408,0.44]	chr22	768108	64	INTRON	INTRON	TNRC6B	ENSG00000100354.21	ENST00000301923.13:ENST00000402203.5:ENST00000454349.7:ENST00000489500.1:ENST00000335727.13	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	50	2	2.44674	2.643755	2.84077	0.0132196	0.00868283	0.0940535	0.0842798
chr8	18001184	18001283	3708553	0	+	0.272727	[0,0.28]	chr8	343990	72	INTRON	INTRON	PCM1	ENSG00000078674.19	ENST00000325083.13:ENST00000519253.5:ENST00000524226.5:ENST00000522275.5	protein_coding	protein_coding	protein_coding	protein_coding	2	53	2	2.59548	2.643675	2.69187	0.0346067	0.0221271	0.136649	0.123903
chr12	22634658	22634758	5094837	0	+	0.41	(0.408,0.44]	chr12	481224	86	INTRON	INTRON	ETNK1	ENSG00000139163.16	ENST00000671733.1:ENST00000335148.8:ENST00000672951.1:ENST00000266517.9:ENST00000538218.2:ENST00000673496.1:ENST00000673406.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	50	2	2.33431	2.6436349999999997	2.95296	0.0129219	0.00929354	0.0990564	0.0817766
chr3	138832796	138832896	1831481	0	-	0.44	(0.408,0.44]	chr3	184062	359	INTRON	INTRON	PIK3CB	ENSG00000051382.9	ENST00000674063.1:ENST00000477593.5:ENST00000462898.5:ENST00000483968.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	50	2	2.33431	2.6436349999999997	2.95296	0.0129219	0.00929354	0.0990564	0.0817766
chr12	108682785	108682885	5406287	0	-	0.29	(0.28,0.32]	chr12	516011	40	INTRON	INTRON	CORO1C	ENSG00000110880.11	ENST00000261401.8:ENST00000420959.6:ENST00000541050.5:ENST00000549384.5:ENST00000421578.6:ENST00000550542.5:ENST00000549772.5:ENST00000552871.5:ENST00000547294.5:ENST00000550032.5:ENST00000551550.5:ENST00000546571.5:ENST00000551044.1:ENST00000547170.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	47	2	2.2609	2.64361	3.02632	0.0671429	0.0071944	0.183051	0.0756118
chr5	54288027	54288127	2620693	0	-	0.32	(0.28,0.32]	chr5	248862	18	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2:ENST00000505630.5:ENST00000505383.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	47	2	2.2609	2.64361	3.02632	0.0671429	0.0071944	0.183051	0.0756118
chrX	74237864	74237963	7841051	0	-	0.323232	(0.32,0.35]	chrX	799709	49	INTRON	INTRON	FTX	ENSG00000230590.12	ENST00000603672.5:ENST00000430772.6:ENST00000602776.6:ENST00000638681.1:ENST00000652319.1:ENST00000661133.1:ENST00000652071.1:ENST00000602812.6:ENST00000651703.1:ENST00000653018.1:ENST00000658448.1:ENST00000662240.1:ENST00000652527.1:ENST00000651451.1:ENST00000657611.1:ENST00000660481.1:ENST00000659574.1:ENST00000661084.1:ENST00000662494.1:ENST00000670936.1:ENST00000602420.6:ENST00000658203.1:ENST00000638985.1:ENST00000691187.1:ENST00000603037.2:ENST00000641360.1:ENST00000687056.1:ENST00000654870.2:ENST00000652540.1:ENST00000652331.2:ENST00000652013.1:ENST00000669263.1:ENST00000657070.1:ENST00000665069.1:ENST00000651936.1:ENST00000652496.1:ENST00000653874.2:ENST00000661335.1:ENST00000664123.1:ENST00000658439.1:ENST00000666535.1:ENST00000652970.1:ENST00000423992.3:ENST00000665313.2:ENST00000651140.1:ENST00000660100.1:ENST00000693483.1	lncRNA	lncRNA	lncRNA	lncRNA	8	144	2	2.50827	2.64356	2.77885	0.00116775	6.16567e-4	0.0312127	0.0223951
chr7	5997125	5997225	3475724	0	-	0.47	(0.44,0.476]	chr7	325111	4	SS5_PROX	SS5_PROX:INTRON	PMS2	ENSG00000122512.16	ENST00000265849.12:ENST00000441476.6:ENST00000642292.1:ENST00000642456.1:ENST00000643595.1:ENST00000382321.5:ENST00000644110.1:ENST00000406569.7:ENST00000469652.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	112	2	1.833	2.643405	3.45381	0.00977742	7.90762e-5	0.0835427	0.00739361
chr4	1887400	1887500	1910730	0	+	0.41	(0.408,0.44]	chr4	191707	155	INTRON	INTRON	NSD2	ENSG00000109685.19	ENST00000508803.6:ENST00000507820.5:ENST00000508355.5:ENST00000514045.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	68	2	2.60048	2.64335	2.68622	0.00484324	0.00418848	0.0640618	0.0572071
chr16	81005033	81005133	6530679	0	-	0.37	(0.35,0.378]	chr16	632677	33	INTRON	INTRON	CMC2	ENSG00000103121.9	ENST00000219400.8:ENST00000486645.5:ENST00000570195.5:ENST00000569187.5:ENST00000570086.5:ENST00000565650.5:ENST00000567593.5:ENST00000568228.5:ENST00000565914.5:ENST00000565108.5:ENST00000565925.5:ENST00000564174.5:ENST00000565613.5:ENST00000562713.3:ENST00000562828.5:ENST00000630396.1:ENST00000565514.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	121	2	2.25522	2.6433	3.03138	0.00456563	1.86201e-4	0.0595107	0.0119078
chr10	103191338	103191437	4683464	0	-	0.383838	(0.378,0.408]	chr10	432426	37	INTRON	INTRON	NT5C2	ENSG00000076685.19	ENST00000675164.1:ENST00000343289.9:ENST00000404739.8:ENST00000675020.1:ENST00000674860.1:ENST00000676449.1:ENST00000676428.1:ENST00000674728.1:ENST00000675811.1:ENST00000369857.9:ENST00000675436.1:ENST00000674696.1:ENST00000675326.1:ENST00000675645.1:ENST00000470299.2:ENST00000452156.5:ENST00000461461.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	65	2	2.17296	2.64328	3.1136	0.0110512	0.00443339	0.0873897	0.061054
chr4	78826455	78826555	1981888	0	+	0.44	(0.408,0.44]	chr4	198472	3	SS5_PROX	SS5_PROX:INTRON	BMP2K	ENSG00000138756.19	ENST00000389010.7:ENST00000502613.3:ENST00000502871.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	69	2	2.08621	2.643275	3.20034	0.00683843	0.00398025	0.0748032	0.0549214
chr19	18363780	18363879	7032687	0	+	0.59596	(0.57,1]	chr19	700773	3	UTR3	UTR3:EXON_MRNA:INTRON	PGPEP1	ENSG00000130517.14	ENST00000269919.11:ENST00000252813.5:ENST00000596962.5:ENST00000600283.6:ENST00000597663.2:ENST00000595552.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	45	2	1.8633	2.643265	3.42323	0.0066826	8.58388e-4	0.0738715	0.0267428
chr7	64799867	64799967	3320399	0	+	0.55	(0.515,0.57]	chr7	308703	49	INTRON	INTRON	ZNF138	ENSG00000197008.10	ENST00000359735.7:ENST00000440155.6:ENST00000494380.5:ENST00000307355.12:ENST00000437743.1:ENST00000440598.2:ENST00000430838.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	52	2	1.88259	2.643235	3.40388	0.0251849	0.00142538	0.133519	0.0340865
chr1	151456874	151456973	554941	0	-	0.383838	(0.378,0.408]	chr1	65564	18	INTRON	INTRON	POGZ	ENSG00000143442.22	ENST00000271715.7:ENST00000358476.7:ENST00000368863.6:ENST00000409503.5:ENST00000531094.5:ENST00000491586.5:ENST00000485040.5:ENST00000467287.5:ENST00000533351.5:ENST00000476128.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	128	2	2.37292	2.6432200000000003	2.91352	0.00105162	4.99779e-4	0.0299022	0.0206993
chr16	22479331	22479431	6322378	0	+	0.3	(0.28,0.32]	chr16	605376	2	SS5_PROX	SS5_PROX:INTRON	SMG1P1:NPIPB5	ENSG00000237296.10:ENSG00000243716.11	ENST00000309865.11:ENST00000431681.5:ENST00000415654.5	protein_coding	processed_transcript	protein_coding:transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	2	47	2	2.60656	2.643155	2.67975	0.0256827	0.0252505	0.133676	0.12011
chr18	9948558	9948655	6873697	0	+	0.525773	(0.515,0.57]	chr18	680899	11	EXON_MRNA	EXON_MRNA:INTRON	VAPA	ENSG00000101558.14	ENST00000400000.7:ENST00000340541.4:ENST00000584796.5:ENST00000583879.5:ENST00000583475.1:ENST00000577539.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	22	274	2	2.27959	2.643155	3.00672	7.88661e-5	4.62386e-6	0.00739361	0.00158097
chr20	47356485	47356556	7349518	0	-	0.408451	(0.408,0.44]	chr20	749374	2	SS5_PROX	SS5_PROX:INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000458360.6:ENST00000262975.8:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000435836.5	protein_coding	protein_coding	protein_coding	protein_coding	6	94	2	2.08621	2.64315	3.20009	0.00683843	4.59843e-4	0.0748032	0.01978
chr16	16550400	16550500	6311366	0	+	0.42	(0.408,0.44]	chr16	604098	504	INTRON	INTRON	ENSG00000260126	ENSG00000260126.2	ENST00000567465.2	lncRNA	lncRNA	lncRNA	lncRNA	9	144	2	2.51849	2.643085	2.76768	6.71664e-4	4.23399e-4	0.0235155	0.0189958
chr16	46965591	46965685	6479848	0	-	0.542553	(0.515,0.57]	chr16	626860	4	INTRON	INTRON	DNAJA2	ENSG00000069345.12	ENST00000317089.10:ENST00000563158.1:ENST00000617000.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	45	2	2.53845	2.643085	2.74772	0.0142192	0.00632226	0.103638	0.0687526
chr5	1615508	1615608	2566115	0	-	0.43	(0.408,0.44]	chr5	245807	124	INTRON	INTRON	PDCD6P1	ENSG00000188002.11	ENST00000507841.5:ENST00000512335.5:ENST00000692393.1:ENST00000507290.5:ENST00000690809.1:ENST00000688433.1:ENST00000507505.5:ENST00000691115.1:ENST00000502273.7:ENST00000522848.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	5	69	2	1.79818	2.643055	3.48793	0.020428	0.00130904	0.122109	0.0331539
chr5	71494660	71494758	2383972	0	+	0.316327	(0.28,0.32]	chr5	229912	3	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	BDP1	ENSG00000145734.20	ENST00000358731.9:ENST00000508917.6:ENST00000508157.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	63	2	2.55521	2.64299	2.73077	0.0220748	0.0067419	0.115395	0.0739405
chr21	31682303	31682402	7437308	0	-	0.50505	(0.476,0.515]	chr21	758598	96	INTRON	INTRON	SCAF4	ENSG00000156304.15	ENST00000286835.12:ENST00000399804.5:ENST00000434667.3	protein_coding	protein_coding	protein_coding	protein_coding	28	393	2	2.49842	2.642985	2.78755	3.58274e-5	1.06746e-5	0.00508104	0.00239354
chr19	19479911	19480011	7036095	0	+	0.5	(0.476,0.515]	chr19	701470	68	INTRON	INTRON	GATAD2A	ENSG00000167491.18	ENST00000360315.7:ENST00000609040.5:ENST00000417582.6:ENST00000683918.1:ENST00000432704.5:ENST00000404158.5:ENST00000429242.7:ENST00000358713.7:ENST00000444839.1:ENST00000418032.3:ENST00000473184.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	60	2	1.88582	2.642925	3.40003	0.0273268	0.00139193	0.123904	0.0341261
chr1	10556977	10557077	23802	0	+	0.35	(0.32,0.35]	chr1	2518	203	INTRON	INTRON	PEX14	ENSG00000142655.13	ENST00000356607.9:ENST00000491661.2	protein_coding	protein_coding	protein_coding	protein_coding	2	43	2	2.37794	2.6429	2.90786	0.0498601	0.00993008	0.156383	0.0877296
chr3	33089221	33089321	1651087	0	-	0.35	(0.32,0.35]	chr3	169303	116	INTRON	INTRON	GLB1	ENSG00000170266.16	ENST00000399402.7:ENST00000307363.10:ENST00000307377.12:ENST00000482097.5:ENST00000485698.5:ENST00000498537.5:ENST00000415454.1:ENST00000438227.1:ENST00000440656.1:ENST00000464355.1:ENST00000450835.1:ENST00000436768.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	43	2	2.37794	2.6429	2.90786	0.0498601	0.00993008	0.156383	0.0877296
chr2	112655629	112655728	852163	0	+	0.343434	(0.32,0.35]	chr2	95585	23	INTRON	INTRON	SLC20A1	ENSG00000144136.11	ENST00000272542.8:ENST00000498224.5:ENST00000433924.5:ENST00000456264.5:ENST00000413135.1:ENST00000480984.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	18	317	2	2.05408	2.6428599999999998	3.23164	0.00169207	2.33884e-6	0.0371304	9.61101e-4
chr15	64380358	64380457	6205080	0	-	0.373737	(0.35,0.378]	chr15	591801	31	INTRON	INTRON	ENSG00000259316:PCLAF	ENSG00000259316.12:ENSG00000166803.14	ENST00000634318.1:ENST00000635704.1:ENST00000634529.1:ENST00000635511.1:ENST00000635605.1:ENST00000635593.1:ENST00000635320.1:ENST00000300035.9:ENST00000380258.6:ENST00000559519.5:ENST00000558008.3:ENST00000558043.5:ENST00000560234.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	58	2	2.56071	2.642845	2.72498	0.0168499	0.00725312	0.11068	0.072984
chr12	91445449	91445549	5383670	0	-	0.3	(0.28,0.32]	chr12	513479	457	INTRON	INTRON	ENSG00000289605	ENSG00000289605.1	ENST00000685093.1	lncRNA	lncRNA	lncRNA	lncRNA	3	63	2	2.24061	2.6427300000000002	3.04485	0.0194267	0.00894006	0.119831	0.0799922
chr1	148750664	148750762	213798	0	+	0.428571	(0.408,0.44]	chr1	23730	13	UTR3	UTR3:EXON_MRNA	NUDT4B	ENSG00000177144.8	ENST00000322209.5	protein_coding	protein_coding	protein_coding	protein_coding	20	301	2	2.12617	2.6426600000000002	3.15915	6.89088e-4	1.25748e-6	0.0240528	6.52747e-4
chr18	80139289	80139385	6938394	0	+	0.333333	(0.32,0.35]	chr18	686213	6	UTR3	UTR3:EXON_MRNA:INTRON	ADNP2	ENSG00000101544.9	ENST00000262198.9:ENST00000561195.1	protein_coding	protein_coding	protein_coding	protein_coding	2	43	2	2.57263	2.6426600000000002	2.71269	0.0312297	0.0181461	0.13151	0.114853
chr8	58555098	58555198	3757505	0	+	0.34	(0.32,0.35]	chr8	349434	14	INTRON	INTRON	SDCBP	ENSG00000137575.12	ENST00000522243.5:ENST00000447182.6:ENST00000413219.6:ENST00000424270.6:ENST00000523483.5:ENST00000520168.5:ENST00000260130.9:ENST00000519115.5:ENST00000522843.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	43	2	2.57263	2.6426600000000002	2.71269	0.0312297	0.0181461	0.13151	0.114853
chr8	67077473	67077571	3776755	0	+	0.5	(0.476,0.515]	chr8	350250	5	INTRON	INTRON	CSPP1	ENSG00000104218.16	ENST00000676113.1:ENST00000675306.2:ENST00000678156.1:ENST00000262210.11:ENST00000678017.1:ENST00000675869.1:ENST00000521919.6:ENST00000678542.1:ENST00000677619.1:ENST00000676605.1:ENST00000676471.1:ENST00000677256.1:ENST00000676847.1:ENST00000677009.1:ENST00000675820.1:ENST00000676317.1:ENST00000677592.1:ENST00000676573.1:ENST00000678318.1:ENST00000677473.1:ENST00000674993.1:ENST00000678553.1:ENST00000678927.1:ENST00000678204.1:ENST00000679226.1:ENST00000676882.1:ENST00000675955.1:ENST00000678728.1:ENST00000677430.1:ENST00000677455.1:ENST00000677071.1:ENST00000678616.1:ENST00000678362.1:ENST00000679112.1:ENST00000678645.1:ENST00000676567.1:ENST00000677845.1:ENST00000519701.5:ENST00000519163.6:ENST00000676858.1:ENST00000678747.1:ENST00000678821.1:ENST00000678744.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	68	2	1.99457	2.642655	3.29074	0.009924	0.00272563	0.0877296	0.0467523
chr2	28790297	28790396	725042	0	+	0.363636	(0.35,0.378]	chr2	83757	11	INTRON	INTRON	PPP1CB	ENSG00000213639.10	ENST00000358506.6:ENST00000296122.10:ENST00000395366.3	protein_coding	protein_coding	protein_coding	protein_coding	4	65	2	2.20096	2.642635	3.08431	0.0087123	0.0065853	0.0844834	0.0701901
chr19	28497346	28497446	7166068	0	-	0.35	(0.32,0.35]	chr19	724189	291	INTRON	INTRON	ENSG00000283403:ENSG00000267243	ENSG00000283403.1:ENSG00000267243.6	ENST00000592347.5:ENST00000593065.5	lncRNA	lncRNA	lncRNA	lncRNA	17	281	2	2.12954	2.6425799999999997	3.15562	5.37254e-4	3.73037e-5	0.0209651	0.00521154
chr1	31014699	31014799	412383	0	-	0.52	(0.515,0.57]	chr1	49725	72	INTRON	INTRON	PUM1	ENSG00000134644.16	ENST00000426105.7:ENST00000373747.7:ENST00000257075.9:ENST00000424085.6:ENST00000525843.5:ENST00000440538.6:ENST00000373741.8:ENST00000373742.6:ENST00000526215.5:ENST00000525948.5:ENST00000480602.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	69	2	2.364	2.642575	2.92115	0.00447856	0.00110258	0.0593175	0.03038
chr12	122224936	122225031	5439706	0	-	0.431579	(0.408,0.44]	chr12	520192	3	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	DIABLO	ENSG00000184047.20	ENST00000443649.9:ENST00000650715.1:ENST00000464942.7:ENST00000353548.11:ENST00000644227.1:ENST00000644509.1:ENST00000342392.3:ENST00000645569.1:ENST00000267169.11:ENST00000540535.6:ENST00000541273.6:ENST00000541656.6:ENST00000446652.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	111	2	2.63748	2.642535	2.64759	0.0016061	5.0683e-4	0.0364977	0.0202328
chr13	102645107	102645206	5532492	0	+	0.50505	(0.476,0.515]	chr13	528742	2	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	TPP2	ENSG00000134900.12	ENST00000376052.5:ENST00000651448.1:ENST00000376065.8:ENST00000652308.1:ENST00000651544.1:ENST00000651748.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	50	2	2.13304	2.64253	3.15202	0.024866	0.00455841	0.132101	0.0595107
chr9	4850947	4851047	4095459	0	+	0.38	(0.378,0.408]	chr9	373212	10	INTRON	INTRON	RCL1	ENSG00000120158.12	ENST00000381750.9:ENST00000442869.5:ENST00000381730.5:ENST00000381728.5:ENST00000448872.6	protein_coding	protein_coding	protein_coding	protein_coding	5	71	2	2.04798	2.64253	3.23708	0.00809949	0.00365053	0.0808864	0.0535094
chr3	101681673	101681765	1758890	0	-	0.5	(0.476,0.515]	chr3	178423	6	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	RPL24	ENSG00000114391.13	ENST00000394077.8:ENST00000464595.1:ENST00000495401.5:ENST00000488288.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	67	2	2.58615	2.642505	2.69886	0.00515536	0.00385209	0.0650394	0.0542786
chr17	47678885	47678979	6622898	0	+	0.404255	(0.378,0.408]	chr17	646108	6	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	KPNB1	ENSG00000108424.11	ENST00000535458.6:ENST00000583648.6:ENST00000290158.9:ENST00000540627.5:ENST00000582097.5:ENST00000677341.1:ENST00000580573.2:ENST00000580158.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	146	2	2.60805	2.64249	2.67693	9.04599e-4	2.01028e-4	0.0278365	0.0124047
chr7	66402845	66402945	3538516	0	-	0.38	(0.378,0.408]	chr7	330103	3	SS3_PROX	SS3_PROX:INTRON	LINC00174	ENSG00000179406.9	ENST00000638517.1:ENST00000640964.1	lncRNA	lncRNA	lncRNA	lncRNA	3	52	2	2.05897	2.64248	3.22599	0.0339294	0.00288652	0.134508	0.0494641
chr7	75464607	75464707	3558713	0	-	0.23	[0,0.28]	chr7	331545	220	INTRON	INTRON	POM121C	ENSG00000272391.6	ENST00000615331.5:ENST00000398379.2	protein_coding	protein_coding	protein_coding	protein_coding	3	72	2	2.5957	2.6424399999999997	2.68918	0.0275571	0.00656974	0.123904	0.0736092
chr18	80141743	80141843	6938419	0	+	0.5	(0.476,0.515]	chr18	686214	15	INTRON	INTRON	ADNP2	ENSG00000101544.9	ENST00000561195.1	protein_coding	protein_coding	protein_coding	protein_coding	2	37	2	2.40608	2.642435	2.87879	0.0425709	0.00999149	0.148082	0.0879541
chr22	50520409	50520501	7545370	0	+	0.51087	(0.476,0.515]	chr22	771191	1	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	NCAPH2	ENSG00000025770.19	ENST00000420993.7:ENST00000395701.7:ENST00000523045.5:ENST00000299821.15:ENST00000520297.5:ENST00000522048.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	37	2	2.40608	2.642435	2.87879	0.0425709	0.00999149	0.148082	0.0879541
chr9	37324548	37324647	4119708	0	+	0.484848	(0.476,0.515]	chr9	375413	23	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000461038.5:ENST00000488607.5:ENST00000463625.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	37	2	2.40608	2.642435	2.87879	0.0425709	0.00999149	0.148082	0.0879541
chr17	78113707	78113791	6844326	0	-	0.404762	(0.378,0.408]	chr17	677103	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	TMC6	ENSG00000141524.18	ENST00000590602.6:ENST00000592076.5:ENST00000322914.7:ENST00000392467.7:ENST00000590494.1:ENST00000306591.11:ENST00000593044.5:ENST00000591436.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	103	2	2.50099	2.64236	2.78373	0.00245021	9.21936e-4	0.0457892	0.0278396
chr15	30654691	30654790	5992565	0	+	0.454545	(0.44,0.476]	chr15	569759	53	INTRON	INTRON	ENSG00000284906:ENSG00000285035	ENSG00000284906.3:ENSG00000285035.2	ENST00000685924.1:ENST00000563110.6:ENST00000642399.2:ENST00000566548.5	protein_coding	protein_coding	protein_coding:transcribed_unprocessed_pseudogene	protein_coding:nonsense_mediated_decay:processed_transcript:transcribed_unprocessed_pseudogene	9	140	2	2.61031	2.642275	2.67424	8.11387e-4	1.95461e-4	0.0263656	0.0122528
chr7	152760426	152760525	3450525	0	+	0.474747	(0.44,0.476]	chr7	322519	1	INTRON	INTRON	ACTR3B	ENSG00000133627.18	ENST00000377776.7:ENST00000256001.13:ENST00000397282.2	protein_coding	protein_coding	protein_coding	protein_coding	3	53	2	1.85146	2.642255	3.43305	0.0545846	0.00159668	0.182529	0.0364566
chr1	39879690	39879789	428235	0	-	0.494949	(0.476,0.515]	chr1	52034	32	INTRON	INTRON	TRIT1	ENSG00000043514.17	ENST00000316891.10:ENST00000648678.1:ENST00000537440.5:ENST00000372818.5:ENST00000462797.5:ENST00000441669.6:ENST00000495175.6:ENST00000491865.5:ENST00000541099.5:ENST00000492612.6:ENST00000489945.5:ENST00000486825.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	37	2	2.63168	2.6421799999999998	2.65268	0.0237106	0.0201975	0.121243	0.118716
chr11	76869964	76870064	4836863	0	+	0.48	(0.476,0.515]	chr11	451195	13	INTRON	INTRON	ACER3	ENSG00000078124.13	ENST00000679754.1:ENST00000534206.5:ENST00000679866.1:ENST00000680842.1:ENST00000681257.1:ENST00000681354.1:ENST00000681732.1:ENST00000680583.1:ENST00000532485.6:ENST00000681375.1:ENST00000681004.1:ENST00000525194.5:ENST00000525861.5:ENST00000530182.6:ENST00000531461.5:ENST00000681955.1:ENST00000681411.1:ENST00000679611.1:ENST00000679924.1:ENST00000526597.5:ENST00000681251.1:ENST00000530334.6:ENST00000533873.1:ENST00000531352.5:ENST00000278544.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	37	2	2.63168	2.6421799999999998	2.65268	0.0237106	0.0201975	0.121243	0.118716
chr12	1538634	1538734	5063041	0	+	0.5	(0.476,0.515]	chr12	477805	73	INTRON	INTRON	WNT5B	ENSG00000111186.13	ENST00000539198.5:ENST00000545811.5	protein_coding	protein_coding	protein_coding	protein_coding	2	37	2	2.63168	2.6421799999999998	2.65268	0.0237106	0.0201975	0.121243	0.118716
chr17	47675911	47676010	6622861	0	+	0.484848	(0.476,0.515]	chr17	646092	3	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	KPNB1	ENSG00000108424.11	ENST00000535458.6:ENST00000583648.6:ENST00000290158.9:ENST00000540627.5:ENST00000582097.5:ENST00000677341.1:ENST00000579901.5:ENST00000580573.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	51	2	1.99341	2.642075	3.29074	0.037389	0.00272563	0.155878	0.0467523
chr2	55214481	55214577	1122477	0	-	0.34375	(0.32,0.35]	chr2	120265	2	EXON_LNCRNA	EXON_LNCRNA:INTRON	CLHC1:ENSG00000203327	ENSG00000162994.16:ENSG00000203327.2	ENST00000401408.6:ENST00000428621.5:ENST00000494539.5:ENST00000407122.5:ENST00000406076.5:ENST00000487320.5:ENST00000466020.1:ENST00000366153.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:nonsense_mediated_decay:lncRNA:processed_transcript	2	44	2	2.48693	2.6420000000000003	2.79707	0.0338094	0.0170923	0.146709	0.104099
chr16	22518166	22518260	6322796	0	+	0.468085	(0.44,0.476]	chr16	605469	7	INTRON	INTRON	NPIPB5	ENSG00000243716.11	ENST00000415654.5:ENST00000415833.6:ENST00000543407.5:ENST00000541154.5:ENST00000545375.5:ENST00000544308.5:ENST00000424340.6:ENST00000521555.6:ENST00000542518.5:ENST00000540704.1:ENST00000517539.5:ENST00000541664.5:ENST00000528249.5:ENST00000517347.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	111	2	2.03524	2.641975	3.24871	0.00336403	3.52936e-4	0.053249	0.0174637
chr11	47528668	47528768	4950158	0	-	0.48	(0.476,0.515]	chr11	464246	40	INTRON	INTRON	CELF1	ENSG00000149187.19	ENST00000310513.10:ENST00000687097.1:ENST00000531165.5:ENST00000530151.5:ENST00000525841.5:ENST00000526419.1	protein_coding	protein_coding	protein_coding	protein_coding	6	78	2	2.1318	2.64191	3.15202	0.00455841	0.00333541	0.0595107	0.0528877
chr12	53572003	53572102	5328471	0	-	0.444444	(0.44,0.476]	chr12	508398	190	INTRON	INTRON	ATF7	ENSG00000170653.19	ENST00000548446.6:ENST00000420353.7:ENST00000456903.8:ENST00000588232.5:ENST00000551480.2:ENST00000588078.5:ENST00000591397.1:ENST00000548118.6	protein_coding	protein_coding	protein_coding	protein_coding	3	50	2	2.02558	2.641795	3.25801	0.0363567	0.00248185	0.138959	0.0460771
chr16	81589070	81589170	6406442	0	+	0.45	(0.44,0.476]	chr16	615031	932	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6	protein_coding	protein_coding	protein_coding	protein_coding	3	50	2	2.02558	2.641795	3.25801	0.0363567	0.00248185	0.138959	0.0460771
chr6	34309178	34309278	3083938	0	-	0.35	(0.32,0.35]	chr6	288627	131	INTRON	INTRON	NUDT3:RPS10-NUDT3	ENSG00000272325.2:ENSG00000270800.3	ENST00000607016.2:ENST00000639725.1:ENST00000639877.1:ENST00000605528.2	protein_coding	protein_coding	protein_coding	protein_coding	6	89	2	1.61591	2.6417900000000003	3.66767	0.0277247	8.30614e-4	0.137011	0.0266389
chr17	42298461	42298560	6611127	0	+	0.474747	(0.44,0.476]	chr17	643999	23	INTRON	INTRON	STAT5A	ENSG00000126561.18	ENST00000345506.8:ENST00000546010.6:ENST00000677893.1:ENST00000676631.1:ENST00000590726.7:ENST00000678903.1:ENST00000590949.6:ENST00000676585.1:ENST00000588868.5:ENST00000677301.1	protein_coding	protein_coding	protein_coding	protein_coding	5	82	2	2.22103	2.641625	3.06222	0.00776319	8.483e-4	0.0787356	0.0267232
chr6	42791569	42791669	2866861	0	+	0.33	(0.32,0.35]	chr6	271294	91	INTRON	INTRON	BICRAL	ENSG00000112624.13	ENST00000614467.4:ENST00000314073.10	protein_coding	protein_coding	protein_coding	protein_coding	4	78	2	2.4961	2.6415800000000003	2.78706	0.00967886	0.00253645	0.0828038	0.0465056
chr1	207776743	207776843	305158	0	+	0.49	(0.476,0.515]	chr1	35129	6	INTRON	INTRON	CD46	ENSG00000117335.21	ENST00000695779.1:ENST00000695777.1:ENST00000695778.1:ENST00000496723.2:ENST00000695782.1:ENST00000695781.1:ENST00000695780.1:ENST00000636114.2:ENST00000367042.6:ENST00000322875.8:ENST00000322918.9:ENST00000354848.5:ENST00000357714.5:ENST00000358170.6:ENST00000367041.5:ENST00000367047.5:ENST00000695783.1:ENST00000695784.1:ENST00000469535.5:ENST00000360212.6:ENST00000480003.5:ENST00000695786.1:ENST00000490278.2:ENST00000488596.5:ENST00000471987.1:ENST00000462968.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	154	2	1.99881	2.641575	3.28434	0.00483407	1.06026e-5	0.0604516	0.002379
chr12	69588910	69588984	5165412	0	+	0.378378	(0.378,0.408]	chr12	489237	3	INTRON	INTRON	CCT2	ENSG00000166226.13	ENST00000299300.11:ENST00000551620.5:ENST00000544368.6:ENST00000550010.5:ENST00000543146.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	82	2	1.76455	2.641575	3.5186	0.0180091	8.45009e-4	0.106756	0.0263813
chr3	158687092	158687191	1543484	0	+	0.444444	(0.44,0.476]	chr3	160523	19	INTRON	INTRON	GFM1	ENSG00000168827.15	ENST00000486715.6:ENST00000478254.5:ENST00000264263.9:ENST00000477721.1:ENST00000472383.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	52	2	1.93084	2.641555	3.35227	0.0443175	0.0022005699999999998	0.162302	0.0417893
chr12	53623954	53624054	5328994	0	-	0.38	(0.378,0.408]	chr12	508405	226	INTRON	INTRON	ATF7	ENSG00000170653.19	ENST00000548446.6:ENST00000420353.7:ENST00000456903.8:ENST00000588232.5:ENST00000551480.2:ENST00000588078.5:ENST00000591397.1:ENST00000548118.6:ENST00000589726.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	52	2	2.00398	2.6415249999999997	3.27907	0.0393906	0.0023379	0.143072	0.0442989
chr21	46270400	46270481	7471271	0	-	0.37037	(0.35,0.378]	chr21	761664	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	MCM3AP	ENSG00000160294.11	ENST00000397708.1:ENST00000291688.6:ENST00000479557.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	14	228	2	2.17139	2.64148	3.11157	0.00117087	1.55138e-5	0.0312329	0.00296742
chr19	49488144	49488236	7089816	0	+	0.565217	(0.515,0.57]	chr19	709951	1	INTRON	INTRON	RPL13A	ENSG00000142541.18	ENST00000679106.1:ENST00000621674.4:ENST00000624069.3:ENST00000678510.1:ENST00000676477.1:ENST00000391857.9:ENST00000488946.1:ENST00000484279.5:ENST00000486930.6:ENST00000472481.5:ENST00000677048.1:ENST00000678146.1:ENST00000479992.5:ENST00000676556.1:ENST00000477613.6:ENST00000467825.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	13	178	2	1.50569	2.64146	3.77723	0.0151197	3.68387e-7	0.108524	0.00033705300000000003
chr15	66597032	66597132	6050931	0	+	0.38	(0.378,0.408]	chr15	576221	144	INTRON	INTRON	LINC01169	ENSG00000259471.1	ENST00000558797.1	lncRNA	lncRNA	lncRNA	lncRNA	3	52	2	2.11194	2.6414150000000003	3.17089	0.0292534	0.00357279	0.128055	0.0548435
chr16	68301023	68301123	6372250	0	+	0.39	(0.378,0.408]	chr16	612394	38	UTR3	UTR3:EXON_MRNA	SLC7A6	ENSG00000103064.15	ENST00000618043.4:ENST00000648130.1:ENST00000219343.11:ENST00000379152.7:ENST00000566454.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	52	2	2.11194	2.6414150000000003	3.17089	0.0292534	0.00357279	0.128055	0.0548435
chr20	3998566	3998666	7309238	0	-	0.39	(0.378,0.408]	chr20	744300	238	INTRON	INTRON	RNF24	ENSG00000101236.17	ENST00000336095.10:ENST00000358395.11:ENST00000545616.2	protein_coding	protein_coding	protein_coding	protein_coding	3	52	2	2.11194	2.6414150000000003	3.17089	0.0292534	0.00357279	0.128055	0.0548435
chr18	3252982	3253057	6866492	0	+	0.266667	[0,0.28]	chr18	680245	1	SS3_PROX	SS3_PROX:INTRON	MYL12A	ENSG00000101608.13	ENST00000579226.5:ENST00000217652.8:ENST00000580353.1:ENST00000578611.5:ENST00000583449.1:ENST00000578562.6:ENST00000536605.1:ENST00000580887.5:ENST00000577510.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	54	2	2.5055	2.64133	2.77716	0.0359431	0.022039	0.152322	0.115395
chr5	160107944	160108044	2759685	0	-	0.45	(0.44,0.476]	chr5	260436	135	INTRON	INTRON	PWWP2A	ENSG00000170234.13	ENST00000456329.7:ENST00000523662.1:ENST00000307063.9:ENST00000520662.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	80	2	2.53696	2.64121	2.74546	0.00326603	0.00204135	0.0508595	0.041855
chr10	102155521	102155621	4512532	0	+	0.48	(0.476,0.515]	chr10	415623	26	INTRON	INTRON	NOLC1	ENSG00000166197.17	ENST00000405356.5:ENST00000605788.6:ENST00000464969.6:ENST00000603946.5:ENST00000488254.6:ENST00000461421.5:ENST00000476468.5:ENST00000370007.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	66	2	2.47496	2.6411249999999997	2.80729	0.0126008	0.00323541	0.0980703	0.0507251
chr1	160331650	160331749	572200	0	-	0.50505	(0.476,0.515]	chr1	69355	56	INTRON	INTRON	COPA	ENSG00000122218.17	ENST00000241704.8:ENST00000696204.1:ENST00000696203.1:ENST00000649963.1:ENST00000696208.1:ENST00000696207.1:ENST00000649676.1:ENST00000368069.7:ENST00000647693.1:ENST00000649787.1:ENST00000650154.1:ENST00000647799.1:ENST00000648805.1:ENST00000647683.1:ENST00000649231.1:ENST00000648501.1:ENST00000696209.1:ENST00000696210.1:ENST00000696211.1:ENST00000647899.1:ENST00000696212.1:ENST00000696214.1:ENST00000696213.1:ENST00000696215.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	81	2	2.49941	2.6411100000000003	2.78281	0.00811651	6.29551e-4	0.0766625	0.0226349
chr10	27130795	27130888	4586046	0	-	0.430108	(0.408,0.44]	chr10	422735	11	INTRON	INTRON	YME1L1	ENSG00000136758.20	ENST00000376016.8:ENST00000613434.4:ENST00000326799.7:ENST00000491542.6:ENST00000463270.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	70	2	1.44993	2.64105	3.83217	0.0638951	1.79883e-4	0.177824	0.0116696
chr17	82271869	82271969	6852819	0	-	0.59	(0.57,1]	chr17	679168	4	SS5_PROX	SS5_PROX:INTRON	CSNK1D	ENSG00000141551.15	ENST00000398519.9:ENST00000314028.11:ENST00000581241.5:ENST00000392334.6:ENST00000403276.7:ENST00000582844.5:ENST00000580446.1:ENST00000581660.5:ENST00000578194.5:ENST00000579316.5:ENST00000584472.5:ENST00000585026.1:ENST00000579308.1:ENST00000581655.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	61	2	2.02689	2.6410099999999996	3.25513	0.00839052	2.35468e-5	0.0823837	0.00396325
chr1	205748063	205748162	623869	0	-	0.313131	(0.28,0.32]	chr1	74198	169	INTRON	INTRON	NUCKS1	ENSG00000069275.13	ENST00000367142.5	protein_coding	protein_coding	protein_coding	protein_coding	4	76	2	1.94591	2.640935	3.33596	0.0228482	0.00342993	0.125519	0.0517761
chr16	47462959	47463057	6343317	0	+	0.316327	(0.28,0.32]	chr16	608845	4	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	PHKB	ENSG00000102893.17	ENST00000566037.6:ENST00000566044.5:ENST00000299167.12:ENST00000696809.1:ENST00000566721.1:ENST00000323584.10:ENST00000565424.2:ENST00000567402.5:ENST00000563376.5:ENST00000567200.1:ENST00000564873.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	76	2	1.94591	2.640935	3.33596	0.0228482	0.00342993	0.125519	0.0517761
chr12	120157492	120157577	5432857	0	-	0.341176	(0.32,0.35]	chr12	519218	1	SS5_PROX	SS5_PROX:INTRON	GCN1	ENSG00000089154.11	ENST00000300648.7	protein_coding	protein_coding	protein_coding	protein_coding	4	72	2	2.09793	2.640925	3.18392	0.0156788	0.00379806	0.101453	0.0562562
chr13	99248520	99248619	5524917	0	+	0.474747	(0.44,0.476]	chr13	528241	35	INTRON	INTRON	UBAC2	ENSG00000134882.16	ENST00000355700.9:ENST00000403766.8:ENST00000468067.5:ENST00000473091.5:ENST00000376440.6:ENST00000494576.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	67	2	2.63508	2.640885	2.64669	0.00501007	0.0040295	0.0618077	0.0578376
chr7	121077247	121077347	3394529	0	+	0.32	(0.28,0.32]	chr7	317710	2	INTRON	INTRON	CPED1	ENSG00000106034.18	ENST00000310396.10:ENST00000428526.5:ENST00000450913.6:ENST00000520801.5:ENST00000423795.5:ENST00000443817.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	201	2	2.3219	2.64078	2.95966	0.00273333	6.18706e-5	0.0468016	0.00652961
chr12	54234413	54234512	5330432	0	-	0.444444	(0.44,0.476]	chr12	508602	36	UTR3	UTR3:EXON_MRNA	CBX5	ENSG00000094916.16	ENST00000209875.9	protein_coding	protein_coding	protein_coding	protein_coding	19	256	2	2.09012	2.640765	3.19141	3.62029e-4	1.53362e-5	0.0169944	0.00314505
chr7	129233436	129233536	3409556	0	+	0.45	(0.44,0.476]	chr7	318776	76	INTRON	INTRON	AHCYL2	ENSG00000158467.17	ENST00000325006.8:ENST00000446544.6	protein_coding	protein_coding	protein_coding	protein_coding	5	80	2	2.50105	2.6407550000000004	2.78046	0.0028389	0.00240161	0.0473151	0.0452061
chr5	139315504	139315600	2499603	0	+	0.28125	(0.28,0.32]	chr5	238925	9	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	MATR3	ENSG00000280987.4:ENSG00000015479.20	ENST00000509990.5:ENST00000506147.5:ENST00000512107.5:ENST00000361059.7:ENST00000394800.6:ENST00000502929.5:ENST00000504203.5:ENST00000509644.5:ENST00000512876.5:ENST00000513678.5:ENST00000504045.5:ENST00000504311.5:ENST00000502499.5:ENST00000510056.5:ENST00000511249.5:ENST00000394805.8:ENST00000509918.5:ENST00000503811.5:ENST00000511978.5:ENST00000618441.5:ENST00000514528.5:ENST00000504643.5:ENST00000515833.2:ENST00000505625.5:ENST00000511333.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	108	2	2.01298	2.64074	3.2685	0.0046492	0.00432734	0.0629753	0.0579331
chr22	19341207	19341307	7553495	0	-	0.45	(0.44,0.476]	chr22	772184	93	INTRON	INTRON	HIRA	ENSG00000100084.14	ENST00000263208.5:ENST00000340170.8	protein_coding	protein_coding	protein_coding	protein_coding	4	60	2	2.30673	2.64062	2.97451	0.00853825	0.0055175	0.0780043	0.0672816
chrX	73970674	73970774	7682365	0	+	0.49	(0.476,0.515]	chrX	786638	23	INTRON	INTRON	JPX	ENSG00000225470.8	ENST00000664637.1:ENST00000639185.1:ENST00000655090.1:ENST00000640437.1:ENST00000660546.1:ENST00000667886.1:ENST00000660840.1:ENST00000657179.1:ENST00000670506.1:ENST00000657910.1:ENST00000662120.1:ENST00000671207.1:ENST00000659254.1:ENST00000656624.1:ENST00000667573.1:ENST00000660856.1:ENST00000660836.1:ENST00000668590.1:ENST00000658649.1:ENST00000414209.6:ENST00000654137.1:ENST00000670994.1:ENST00000602772.5:ENST00000655879.1:ENST00000657372.1:ENST00000657096.1:ENST00000602985.6:ENST00000670685.1:ENST00000670503.1:ENST00000663027.1:ENST00000654995.1:ENST00000602895.6:ENST00000654374.1:ENST00000660087.1:ENST00000665032.1:ENST00000671336.1:ENST00000671476.1:ENST00000667057.1:ENST00000670192.1:ENST00000670464.1:ENST00000665345.1:ENST00000661546.1:ENST00000662543.1:ENST00000602938.6:ENST00000664295.1:ENST00000654005.1:ENST00000669149.1:ENST00000659852.1:ENST00000656509.1:ENST00000602294.6:ENST00000667294.1:ENST00000663470.1:ENST00000602920.6:ENST00000671021.1:ENST00000659849.1:ENST00000667937.1:ENST00000661130.1:ENST00000654196.1:ENST00000655994.1:ENST00000659373.1:ENST00000662239.1:ENST00000670805.1:ENST00000656263.1:ENST00000653069.1:ENST00000657638.1:ENST00000653808.1:ENST00000653929.1:ENST00000653885.1:ENST00000659023.1:ENST00000602546.5:ENST00000659622.1:ENST00000671518.1:ENST00000670408.1	lncRNA	lncRNA	lncRNA	lncRNA	5	80	2	2.37448	2.64058	2.90668	0.00419067	0.00164243	0.0591344	0.0369207
chr4	169579749	169579847	2296826	0	-	0.479592	(0.476,0.515]	chr4	222236	23	INTRON	INTRON	NEK1	ENSG00000137601.18	ENST00000687054.1:ENST00000507142.6:ENST00000686697.1:ENST00000688934.1:ENST00000685111.1:ENST00000687528.1:ENST00000687643.1:ENST00000439128.6:ENST00000511633.5:ENST00000510533.5:ENST00000512193.5:ENST00000693604.1:ENST00000692450.1:ENST00000687219.1:ENST00000693085.1:ENST00000509912.5:ENST00000690631.1:ENST00000688487.1:ENST00000688653.1:ENST00000692868.1:ENST00000692218.1:ENST00000505119.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	12	175	2	2.43212	2.64053	2.84894	2.32094e-4	1.88149e-4	0.0139633	0.011951
chr18	2690565	2690665	6865218	0	+	0.42	(0.408,0.44]	chr18	679976	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	SMCHD1	ENSG00000101596.17	ENST00000320876.11:ENST00000688342.1:ENST00000684915.1:ENST00000581226.1:ENST00000693213.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	50	2	2.49983	2.6405250000000002	2.78122	0.015812	0.00713527	0.101453	0.0756118
chr3	28262393	28262492	1390753	0	+	0.424242	(0.408,0.44]	chr3	145636	83	INTRON	INTRON	CMC1	ENSG00000187118.14	ENST00000477739.1:ENST00000423894.5:ENST00000466830.6:ENST00000334841.10:ENST00000418849.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	50	2	2.49983	2.6405250000000002	2.78122	0.015812	0.00713527	0.101453	0.0756118
chr22	39316405	39316505	7589771	0	-	0.51	(0.476,0.515]	chr22	777089	3	SS5_PROX	SS5_PROX:INTRON	RPL3	ENSG00000100316.16	ENST00000216146.9:ENST00000401609.5:ENST00000465618.5:ENST00000402527.5:ENST00000453303.5:ENST00000484358.1:ENST00000427905.5:ENST00000420536.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	74	2	2.20678	2.6405000000000003	3.07422	0.00506023	0.00484957	0.0646039	0.0605773
chr1	16311686	16311785	382210	0	-	0.414141	(0.408,0.44]	chr1	44880	54	INTRON	INTRON	FBXO42	ENSG00000037637.11	ENST00000375592.8:ENST00000478089.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	51	2	2.58624	2.6404050000000003	2.69457	0.0273686	0.00331036	0.123904	0.0527031
chr8	123235320	123235419	4041420	0	-	0.424242	(0.408,0.44]	chr8	368578	32	INTRON	INTRON	C8orf76:ZHX1-C8orf76	ENSG00000189376.12:ENSG00000259305.6	ENST00000276704.6:ENST00000519791.5:ENST00000357082.8:ENST00000521310.5:ENST00000518996.1:ENST00000622816.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	51	2	2.58624	2.6404050000000003	2.69457	0.0273686	0.00331036	0.123904	0.0527031
chr6	147208466	147208566	2988748	0	+	0.29	(0.28,0.32]	chr6	280001	20	INTRON	INTRON	STXBP5	ENSG00000164506.15	ENST00000321680.11:ENST00000367481.7:ENST00000546097.5:ENST00000367480.7	protein_coding	protein_coding	protein_coding	protein_coding	4	85	2	2.53648	2.64033	2.74418	0.00925866	0.00328589	0.0817766	0.0527031
chr10	122850650	122850750	4710068	0	-	0.43	(0.408,0.44]	chr10	434625	1	SS3_PROX	SS3_PROX:INTRON	FAM24B	ENSG00000213185.7	ENST00000368898.8:ENST00000462859.5:ENST00000368896.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	50	2	2.27464	2.640295	3.00595	0.0158016	0.00781452	0.109464	0.0759016
chr7	130109366	130109466	3413984	0	+	0.41	(0.408,0.44]	chr7	319110	120	INTRON	INTRON	KLHDC10	ENSG00000128607.14	ENST00000335420.10:ENST00000463413.1:ENST00000468226.1	protein_coding	protein_coding	protein_coding	protein_coding	3	50	2	2.27464	2.640295	3.00595	0.0158016	0.00781452	0.109464	0.0759016
chr2	111880310	111880409	1214848	0	-	0.393939	(0.378,0.408]	chr2	129232	3	SS5_PROX	SS5_PROX:INTRON	ANAPC1	ENSG00000153107.13	ENST00000341068.8:ENST00000451367.3:ENST00000628342.1:ENST00000489177.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	11	177	2	2.63462	2.64027	2.64592	4.21248e-4	1.30974e-4	0.0189827	0.0098569
chr6	34288054	34288153	3083724	0	-	0.434343	(0.408,0.44]	chr6	288610	85	UTR3	UTR3:EXON_MRNA	NUDT3:RPS10-NUDT3	ENSG00000272325.2:ENSG00000270800.3	ENST00000607016.2:ENST00000639725.1:ENST00000639877.1	protein_coding	protein_coding	protein_coding	protein_coding	11	158	2	1.83738	2.640235	3.44309	0.00459091	2.69932e-5	0.0623576	0.00430583
chr1	26882141	26882235	405528	0	-	0.446809	(0.44,0.476]	chr1	48764	12	EXON_LNCRNA	EXON_LNCRNA:INTRON	GPN2:ENSG00000289554	ENSG00000142751.15:ENSG00000289554.1	ENST00000374135.9:ENST00000374133.3:ENST00000477418.2:ENST00000687749.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	2	37	2	2.46135	2.640155	2.81896	0.0374637	0.0120766	0.140008	0.0962311
chr1	165834821	165834921	243821	0	+	0.46	(0.44,0.476]	chr1	29139	65	INTRON	INTRON	UCK2	ENSG00000143179.16	ENST00000367879.9:ENST00000642653.1	protein_coding	protein_coding	protein_coding	protein_coding	2	37	2	2.46135	2.640155	2.81896	0.0374637	0.0120766	0.140008	0.0962311
chr20	63917756	63917855	7301186	0	+	0.474747	(0.44,0.476]	chr20	743137	88	INTRON	INTRON	DNAJC5	ENSG00000101152.11	ENST00000360864.9:ENST00000470551.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	37	2	2.46135	2.640155	2.81896	0.0374637	0.0120766	0.140008	0.0962311
chr8	99121945	99122044	3812355	0	+	0.454545	(0.44,0.476]	chr8	353114	1	INTRON	INTRON	VPS13B	ENSG00000132549.20	ENST00000496144.5:ENST00000683334.1:ENST00000682853.1:ENST00000357162.7:ENST00000358544.7:ENST00000683619.1:ENST00000684269.1:ENST00000683869.1:ENST00000682153.1:ENST00000682358.1:ENST00000682145.1:ENST00000355155.6:ENST00000682234.1:ENST00000683486.1:ENST00000684308.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	37	2	2.46135	2.640155	2.81896	0.0374637	0.0120766	0.140008	0.0962311
chr9	122918411	122918509	4338720	0	-	0.459184	(0.44,0.476]	chr9	398806	30	UTR3	UTR3:EXON_MRNA	ZBTB26	ENSG00000171448.9	ENST00000373656.4:ENST00000373654.1	protein_coding	protein_coding	protein_coding	protein_coding	2	37	2	2.46135	2.640155	2.81896	0.0374637	0.0120766	0.140008	0.0962311
chrX	77666773	77666873	7846257	0	-	0.46	(0.44,0.476]	chrX	800139	16	INTRON	INTRON	ATRX	ENSG00000085224.23	ENST00000373344.11:ENST00000395603.7:ENST00000480283.5:ENST00000624166.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	37	2	2.46135	2.640155	2.81896	0.0374637	0.0120766	0.140008	0.0962311
chr4	78834886	78834986	1981974	0	+	0.31	(0.28,0.32]	chr4	198479	8	INTRON	INTRON	BMP2K	ENSG00000138756.19	ENST00000389010.7:ENST00000502613.3:ENST00000502871.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	64	2	2.57195	2.64013	2.70831	0.0331711	0.00378444	0.133994	0.0562562
chr10	22549762	22549861	4578839	0	-	0.454545	(0.44,0.476]	chr10	421973	74	INTRON	INTRON	PIP4K2A	ENSG00000150867.14	ENST00000376573.9:ENST00000323883.11:ENST00000545335.5:ENST00000604912.1	protein_coding	protein_coding	protein_coding	protein_coding	2	37	2	2.5364	2.64006	2.74372	0.0309324	0.0153007	0.13151	0.108569
chr16	4805810	4805909	6438588	0	-	0.454545	(0.44,0.476]	chr16	620136	1	INTRON	INTRON	GLYR1	ENSG00000140632.17	ENST00000321919.14:ENST00000436648.9:ENST00000588732.5:ENST00000589389.5:ENST00000587936.5:ENST00000591451.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	37	2	2.5364	2.64006	2.74372	0.0309324	0.0153007	0.13151	0.108569
chr17	76065255	76065352	6840161	0	-	0.463918	(0.44,0.476]	chr17	676456	7	INTRON	INTRON	SRP68	ENSG00000167881.15	ENST00000307877.7:ENST00000539137.5:ENST00000592704.5:ENST00000591272.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	37	2	2.5364	2.64006	2.74372	0.0309324	0.0153007	0.13151	0.108569
chr22	19894753	19894847	7555838	0	-	0.468085	(0.44,0.476]	chr22	772498	10	UTR3	UTR3:EXON_MRNA:INTRON	TXNRD2	ENSG00000184470.21	ENST00000400518.5:ENST00000542719.6:ENST00000494454.5:ENST00000474308.5:ENST00000400525.6:ENST00000400521.7:ENST00000400519.6:ENST00000634537.1:ENST00000635155.1:ENST00000491939.6:ENST00000334363.14	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:non_stop_decay:nonsense_mediated_decay:processed_transcript	2	37	2	2.5364	2.64006	2.74372	0.0309324	0.0153007	0.13151	0.108569
chr1	167978808	167978908	248914	0	+	0.49	(0.476,0.515]	chr1	29564	34	INTRON	INTRON	DCAF6	ENSG00000143164.16	ENST00000450548.5:ENST00000470919.5:ENST00000432587.6:ENST00000367843.7:ENST00000470721.5:ENST00000367840.4:ENST00000312263.10:ENST00000455334.5:ENST00000491067.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	95	2	1.57117	2.639995	3.70882	0.0148125	4.74495e-4	0.106702	0.0201638
chr12	132772508	132772607	5449620	0	-	0.333333	(0.32,0.35]	chr12	521962	21	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	GOLGA3	ENSG00000090615.16	ENST00000204726.9:ENST00000450791.8:ENST00000693666.1:ENST00000690057.1:ENST00000688114.1:ENST00000687190.1:ENST00000690511.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	14	255	2	2.37833	2.639935	2.90154	0.0012015	1.3716e-5	0.03161	0.00276518
chr1	70236632	70236729	142758	0	+	0.402062	(0.378,0.408]	chr1	16014	7	INTRON	INTRON	SRSF11	ENSG00000116754.14	ENST00000370951.5:ENST00000687381.1:ENST00000370950.7:ENST00000370949.2:ENST00000395136.7:ENST00000486667.5:ENST00000484162.5:ENST00000463859.6:ENST00000690370.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	39	2	2.2259	2.6399150000000002	3.05393	0.0662381	0.00551532	0.181924	0.0672816
chr10	42799414	42799511	4428200	0	+	0.402062	(0.378,0.408]	chr10	408127	4	INTRON	INTRON	BMS1	ENSG00000165733.8	ENST00000374518.6	protein_coding	protein_coding	protein_coding	protein_coding	2	39	2	2.2259	2.6399150000000002	3.05393	0.0662381	0.00551532	0.181924	0.0672816
chr6	37262740	37262840	2855360	0	+	0.39	(0.378,0.408]	chr6	269945	44	INTRON	INTRON	TBC1D22B	ENSG00000065491.8	ENST00000373491.3	protein_coding	protein_coding	protein_coding	protein_coding	3	52	2	2.61188	2.6398650000000004	2.66785	0.0224639	0.0047055	0.11692	0.0631419
chr7	130081702	130081802	3413706	0	+	0.38	(0.378,0.408]	chr7	319098	105	INTRON	INTRON	KLHDC10	ENSG00000128607.14	ENST00000335420.10:ENST00000463413.1:ENST00000468226.1	protein_coding	protein_coding	protein_coding	protein_coding	3	52	2	2.61188	2.6398650000000004	2.66785	0.0224639	0.0047055	0.11692	0.0631419
chr2	61489332	61489432	1130706	0	-	0.52	(0.515,0.57]	chr2	121542	4	SS3_PROX	SS3_PROX:INTRON	XPO1	ENSG00000082898.19	ENST00000677110.1:ENST00000678113.1:ENST00000676553.1:ENST00000677556.1:ENST00000677814.1:ENST00000676771.1:ENST00000677803.1:ENST00000677239.1:ENST00000678790.1:ENST00000677928.1:ENST00000678182.1:ENST00000677150.1:ENST00000678172.1:ENST00000678360.1:ENST00000678081.1:ENST00000676889.1:ENST00000676783.1:ENST00000679035.1:ENST00000677422.1:ENST00000677417.1:ENST00000677813.1:ENST00000676999.1:ENST00000676667.1:ENST00000678263.1:ENST00000678877.1:ENST00000677933.1:ENST00000680228.1:ENST00000677289.1:ENST00000677190.1:ENST00000481073.6:ENST00000677476.1:ENST00000469337.2:ENST00000401558.7:ENST00000428210.5:ENST00000677290.1:ENST00000677850.1:ENST00000676778.1:ENST00000451765.6:ENST00000676789.1:ENST00000678741.1:ENST00000404992.6:ENST00000406957.5:ENST00000677157.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	59	2	2.07721	2.639805	3.2024	0.0067022	0.00322022	0.0738715	0.0507087
chr1	113727968	113728067	525108	0	-	0.414141	(0.408,0.44]	chr1	61795	10	INTRON	INTRON	PHTF1	ENSG00000116793.16	ENST00000369604.6:ENST00000393357.6:ENST00000369600.5:ENST00000369598.5:ENST00000357783.6:ENST00000472612.5:ENST00000486855.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	51	2	2.07919	2.639765	3.20034	0.0291499	0.00398025	0.14147	0.0549214
chr5	151788389	151788485	2521965	0	+	0.427083	(0.408,0.44]	chr5	241304	2	INTRON	INTRON	G3BP1	ENSG00000145907.16	ENST00000523519.5:ENST00000520578.6:ENST00000678070.1:ENST00000678964.1:ENST00000678925.1:ENST00000394123.7:ENST00000676978.1:ENST00000679289.1:ENST00000677493.1:ENST00000676644.1:ENST00000677757.1:ENST00000522761.6:ENST00000677909.1:ENST00000676827.1:ENST00000520177.6:ENST00000676634.1:ENST00000678854.1:ENST00000677602.1:ENST00000519832.1:ENST00000676911.1:ENST00000356245.8:ENST00000678646.1:ENST00000677381.1:ENST00000678904.1:ENST00000678910.1:ENST00000678101.1:ENST00000677105.1:ENST00000676813.1:ENST00000522367.6:ENST00000517947.5:ENST00000507878.7:ENST00000678369.1:ENST00000677433.1:ENST00000678564.1:ENST00000677252.1:ENST00000677923.1:ENST00000677323.1:ENST00000522666.1:ENST00000679057.1:ENST00000677146.1:ENST00000677126.1:ENST00000678027.1:ENST00000678209.1:ENST00000678153.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	51	2	2.07919	2.639765	3.20034	0.0291499	0.00398025	0.14147	0.0549214
chr6	7122576	7122675	2798511	0	+	0.414141	(0.408,0.44]	chr6	263723	135	INTRON	INTRON	RREB1	ENSG00000124782.21	ENST00000379933.7:ENST00000491191.5:ENST00000471433.5:ENST00000379938.7:ENST00000467782.5:ENST00000349384.10:ENST00000334984.10:ENST00000475946.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	51	2	2.07919	2.639765	3.20034	0.0291499	0.00398025	0.14147	0.0549214
chr3	72422407	72422507	1745679	0	-	0.34	(0.32,0.35]	chr3	177368	419	INTRON	INTRON	RYBP	ENSG00000163602.12	ENST00000477973.5	protein_coding	protein_coding	protein_coding	protein_coding	4	72	2	2.53533	2.6397399999999998	2.74415	0.0198267	0.00233994	0.109608	0.0442989
chr10	37840709	37840808	4602430	0	-	0.434343	(0.408,0.44]	chr10	423985	22	INTRON	INTRON	ZNF248	ENSG00000198105.16	ENST00000615949.6:ENST00000485560.5:ENST00000395867.8:ENST00000357328.8:ENST00000611278.4:ENST00000374648.7:ENST00000395873.7:ENST00000395874.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	60	2	2.03431	2.639705	3.2451	0.0154896	0.00337792	0.108998	0.0516884
chr14	31008152	31008252	5857691	0	-	0.42	(0.408,0.44]	chr14	556508	438	INTRON	INTRON	STRN3	ENSG00000196792.12	ENST00000355683.9:ENST00000357479.10:ENST00000555358.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	60	2	2.03431	2.639705	3.2451	0.0154896	0.00337792	0.108998	0.0516884
chr12	115976934	115977033	5422509	0	-	0.474747	(0.44,0.476]	chr12	518165	8	INTRON	INTRON	MED13L	ENSG00000123066.9	ENST00000281928.9:ENST00000648379.1:ENST00000650226.1:ENST00000649607.1:ENST00000648737.1:ENST00000649775.1:ENST00000648825.1:ENST00000648916.1:ENST00000548694.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	92	2	1.93713	2.63961	3.34209	0.0138947	1.47653e-4	0.0955491	0.0105526
chr19	40751052	40751127	7070084	0	+	0.56	(0.515,0.57]	chr19	706481	2	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SNRPA	ENSG00000077312.9	ENST00000601545.5:ENST00000601253.5:ENST00000597353.5:ENST00000599362.5:ENST00000599570.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	43	2	2.51561	2.639575	2.76354	0.0147344	0.00635044	0.0983813	0.0723103
chr19	210464	210562	7108793	0	-	0.510204	(0.476,0.515]	chr19	713687	2	INTRON	INTRON	LINC01002	ENSG00000282508.2	ENST00000631772.1:ENST00000633151.1:ENST00000631644.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	5	68	2	1.78315	2.63951	3.49587	0.0215899	0.00120011	0.123836	0.0315806
chr11	108012464	108012563	4855764	0	+	0.393939	(0.378,0.408]	chr11	452870	27	INTRON	INTRON	CUL5	ENSG00000166266.14	ENST00000393094.7:ENST00000532064.5:ENST00000526303.1:ENST00000531427.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	70	2	2.26009	2.639475	3.01886	0.0188651	7.99379e-4	0.108861	0.0258804
chr7	133055957	133056057	3645628	0	-	0.46	(0.44,0.476]	chr7	338880	40	INTRON	INTRON	CHCHD3	ENSG00000106554.13	ENST00000262570.10:ENST00000448878.6:ENST00000423635.5:ENST00000481152.2:ENST00000457942.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	68	2	2.49823	2.639345	2.78046	0.00718224	0.0028389	0.0756118	0.0473151
chr2	28919769	28919868	725435	0	+	0.262626	[0,0.28]	chr2	83818	14	INTRON	INTRON	WDR43	ENSG00000163811.12	ENST00000407426.8:ENST00000296126.6	protein_coding	protein_coding	protein_coding	protein_coding	4	98	2	2.62985	2.63931	2.64877	0.00757778	0.00581422	0.0749063	0.068681
chr1	1889863	1889963	362829	0	-	0.62	(0.57,1]	chr1	42312	1	SS5_PROX	SS5_PROX:INTRON	GNB1	ENSG00000078369.18	ENST00000610897.4:ENST00000615252.4:ENST00000378609.9:ENST00000439272.6:ENST00000434686.6:ENST00000472614.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	27	2	2.38391	2.63927	2.89463	0.0104374	0.00788262	0.0902296	0.076155
chr1	235267148	235267248	663252	0	-	0.58	(0.57,1]	chr1	78552	60	INTRON	INTRON	ARID4B	ENSG00000054267.22	ENST00000349213.7:ENST00000366603.6:ENST00000264183.9:ENST00000421364.5:ENST00000491632.5:ENST00000418304.1:ENST00000466653.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	27	2	2.38391	2.63927	2.89463	0.0104374	0.00788262	0.0902296	0.076155
chr19	5709632	5709728	7124604	0	-	0.604167	(0.57,1]	chr19	717144	8	INTRON	INTRON	LONP1	ENSG00000196365.12	ENST00000360614.8:ENST00000587552.5:ENST00000540670.6:ENST00000593119.5:ENST00000585374.5:ENST00000590558.5:ENST00000590729.5:ENST00000587365.1:ENST00000586617.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	27	2	2.38391	2.63927	2.89463	0.0104374	0.00788262	0.0902296	0.076155
chr16	88944135	88944235	6540968	0	-	0.52	(0.515,0.57]	chr16	634104	24	INTRON	INTRON	CBFA2T3	ENSG00000129993.15	ENST00000268679.9:ENST00000563640.1:ENST00000570046.1	protein_coding	protein_coding	protein_coding	protein_coding	3	43	2	2.1885	2.63926	3.09002	0.0202537	0.00491099	0.121364	0.0609494
chr10	70684765	70684865	4447446	0	+	0.71	(0.57,1]	chr10	410366	94	INTRON	INTRON	ADAMTS14	ENSG00000138316.11	ENST00000373207.2:ENST00000373208.5	protein_coding	protein_coding	protein_coding	protein_coding	3	27	2	2.28103	2.63916	2.99729	0.0151554	0.00538023	0.108535	0.0642754
chr9	15408	15488	4226072	0	-	0.575	(0.57,1]	chr9	388448	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	WASHC1	ENSG00000181404.18	ENST00000442898.5:ENST00000696149.1	protein_coding	protein_coding	protein_coding	protein_coding	3	27	2	2.28103	2.63916	2.99729	0.0151554	0.00538023	0.108535	0.0642754
chr16	87741535	87741630	6538426	0	-	0.557895	(0.515,0.57]	chr16	633534	7	INTRON	INTRON	KLHDC4	ENSG00000104731.14	ENST00000567298.5:ENST00000270583.10:ENST00000347925.9:ENST00000353170.9:ENST00000316853.10:ENST00000566349.5:ENST00000562155.5:ENST00000622456.4:ENST00000562261.1:ENST00000566661.5:ENST00000564484.5:ENST00000565328.5:ENST00000569747.5:ENST00000564396.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	66	2	1.60369	2.63911	3.67453	0.027865	3.27949e-4	0.124158	0.0160995
chr1	154230019	154230118	227621	0	+	0.474747	(0.44,0.476]	chr1	26249	9	INTRON	INTRON	UBAP2L	ENSG00000143569.19	ENST00000343815.10:ENST00000271877.11:ENST00000613315.4:ENST00000441890.5:ENST00000412596.5:ENST00000368504.5:ENST00000428931.6:ENST00000437652.5:ENST00000456325.5:ENST00000361546.6	protein_coding	protein_coding	protein_coding	protein_coding	5	68	2	1.96805	2.63908	3.31011	0.0109533	0.00259023	0.0925675	0.0452934
chr5	154772678	154772778	2527171	0	+	0.46	(0.44,0.476]	chr5	241610	148	INTRON	INTRON	LARP1	ENSG00000155506.19	ENST00000687700.1:ENST00000336314.9:ENST00000690816.1:ENST00000518297.6:ENST00000517616.5:ENST00000518892.1:ENST00000521577.1:ENST00000519931.5:ENST00000524248.5:ENST00000685946.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	68	2	1.96805	2.63908	3.31011	0.0109533	0.00259023	0.0925675	0.0452934
chr14	21472989	21473087	5836452	0	-	0.469388	(0.44,0.476]	chr14	554804	39	INTRON	INTRON	RAB2B	ENSG00000129472.15	ENST00000397762.6:ENST00000649801.1:ENST00000417141.5:ENST00000461909.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	77	2	1.34221	2.63903	3.93585	0.0656882	1.04728e-4	0.181162	0.00863456
chr1	114718930	114719022	528210	0	-	0.402174	(0.378,0.408]	chr1	62240	3	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	CSDE1	ENSG00000009307.17	ENST00000339438.10:ENST00000610726.5:ENST00000692719.1:ENST00000358528.9:ENST00000688211.1:ENST00000438362.7:ENST00000689217.1:ENST00000689989.1:ENST00000686025.1:ENST00000686781.1:ENST00000686123.1:ENST00000684913.1:ENST00000686235.1:ENST00000693467.1:ENST00000689732.1:ENST00000693644.1:ENST00000687759.1:ENST00000692044.1:ENST00000689885.1:ENST00000691403.1:ENST00000692629.1:ENST00000690013.1:ENST00000690420.1:ENST00000692950.1:ENST00000686667.1:ENST00000691032.1:ENST00000685676.1:ENST00000529046.6:ENST00000692672.1:ENST00000691377.1:ENST00000689631.1:ENST00000688611.1:ENST00000690207.1:ENST00000693311.1:ENST00000689510.1:ENST00000686581.1:ENST00000689727.1:ENST00000690784.1:ENST00000483030.2:ENST00000687548.1:ENST00000689573.1:ENST00000261443.9:ENST00000530886.5:ENST00000369530.5:ENST00000483407.1:ENST00000534699.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	71	2	1.80483	2.639025	3.47322	0.0201276	0.00147803	0.121243	0.0348908
chr7	111209210	111209310	3620574	0	-	0.45	(0.44,0.476]	chr7	337093	2453	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	68	2	1.88483	2.639025	3.39322	0.0149825	0.00187283	0.107704	0.0390476
chr17	31308104	31308204	6593326	0	+	0.4	(0.378,0.408]	chr17	641274	81	INTRON	INTRON	NF1	ENSG00000196712.20	ENST00000696138.1:ENST00000356175.7:ENST00000691014.1:ENST00000358273.9:ENST00000579081.5:ENST00000456735.6:ENST00000493220.5:ENST00000687863.1:ENST00000581113.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	106	2	2.10836	2.63896	3.16956	0.00375851	5.70211e-4	0.0562562	0.0220524
chr3	186783528	186783610	1586082	0	+	0.585366	(0.57,1]	chr3	164264	5	UTR5	UTR5:EXON_MRNA	EIF4A2	ENSG00000156976.17	ENST00000441007.5:ENST00000445596.5:ENST00000426808.5:ENST00000465222.1:ENST00000323963.10:ENST00000440191.6:ENST00000425053.5:ENST00000429589.5:ENST00000495049.5:ENST00000465267.5:ENST00000465032.5:ENST00000486805.5:ENST00000491473.5:ENST00000485101.5:ENST00000475653.5:ENST00000443963.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	20	154	2	2.60317	2.63888	2.67459	1.78611e-5	3.84995e-6	0.00342653	0.00129668
chr17	44206596	44206694	6779148	0	-	0.428571	(0.408,0.44]	chr17	668335	17	UTR3	UTR3:EXON_MRNA	UBTF	ENSG00000108312.15	ENST00000302904.8:ENST00000343638.9:ENST00000436088.6:ENST00000527034.5:ENST00000533177.5	protein_coding	protein_coding	protein_coding	protein_coding	7	87	2	1.68203	2.638835	3.59564	0.0175685	5.73354e-4	0.105143	0.0217398
chr13	95131798	95131898	5638158	0	-	0.38	(0.378,0.408]	chr13	537056	154	INTRON	INTRON	ABCC4	ENSG00000125257.16	ENST00000645237.2:ENST00000643051.1:ENST00000643842.1:ENST00000646439.1:ENST00000644880.1:ENST00000643816.1:ENST00000536256.3:ENST00000643556.1:ENST00000629385.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	77	2	2.54736	2.638645	2.72993	0.0188736	8.3709e-4	0.108861	0.0263691
chr22	49604655	49604755	7602127	0	-	0.4	(0.378,0.408]	chr22	778570	90	INTRON	INTRON	MIR3667HG	ENSG00000188511.13	ENST00000414287.5:ENST00000416411.1:ENST00000689875.1	lncRNA	lncRNA	lncRNA	lncRNA	10	162	2	2.41673	2.63863	2.86053	0.00122932	6.7208e-5	0.0321361	0.00678102
chr1	100416121	100416221	173266	0	+	0.39	(0.378,0.408]	chr1	18824	249	INTRON	INTRON	CDC14A	ENSG00000079335.20	ENST00000646665.1:ENST00000644844.1:ENST00000635056.2:ENST00000647005.1:ENST00000647203.1:ENST00000644676.1:ENST00000361544.11:ENST00000370124.8:ENST00000336454.5:ENST00000644813.1:ENST00000455467.6:ENST00000646563.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	99	2	1.60112	2.638605	3.67609	0.0132298	6.32264e-4	0.0999551	0.0231174
chr21	37454233	37454332	7407104	0	+	0.484848	(0.476,0.515]	chr21	754891	235	INTRON	INTRON	DYRK1A	ENSG00000157540.22	ENST00000646523.1:ENST00000647425.1:ENST00000647188.2:ENST00000647504.1:ENST00000644942.1:ENST00000338785.8:ENST00000643624.1:ENST00000643551.1:ENST00000426672.6:ENST00000398960.7:ENST00000646548.1:ENST00000645424.1:ENST00000643854.1:ENST00000455097.6:ENST00000642309.1:ENST00000645774.1:ENST00000398956.2	protein_coding	protein_coding	protein_coding	protein_coding	7	101	2	2.16055	2.63851	3.11647	0.00292015	6.41912e-4	0.0494641	0.0231685
chr16	4469798	4469898	6437572	0	-	0.5	(0.476,0.515]	chr16	619900	1	SS3_PROX	SS3_PROX:INTRON	NMRAL1	ENSG00000153406.14	ENST00000574733.5:ENST00000283429.11:ENST00000404295.7:ENST00000574425.5:ENST00000571291.5:ENST00000573520.5:ENST00000573571.1:ENST00000575002.5:ENST00000575557.5:ENST00000576935.5:ENST00000575995.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	61	2	1.74317	2.638395	3.53362	0.0396373	0.00102391	0.161534	0.029231300000000002
chr20	6020901	6020999	7230698	0	+	0.469388	(0.44,0.476]	chr20	734840	50	INTRON	INTRON	CRLS1	ENSG00000088766.12	ENST00000452938.5:ENST00000378863.9:ENST00000378868.4:ENST00000489345.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	50	2	2.19078	2.638345	3.08591	0.0226089	0.00481262	0.117489	0.0638089
chr10	28536359	28536459	4413833	0	+	0.29	(0.28,0.32]	chr10	407136	3	SS5_PROX	SS5_PROX:INTRON	WAC	ENSG00000095787.24	ENST00000680735.1:ENST00000375664.8:ENST00000428935.6:ENST00000651598.1:ENST00000628285.3:ENST00000681112.1:ENST00000679570.1:ENST00000375646.5:ENST00000354911.9:ENST00000347934.8:ENST00000420266.6:ENST00000651885.1:ENST00000651441.1:ENST00000679398.1:ENST00000424454.5:ENST00000442148.6:ENST00000448193.5:ENST00000414108.6:ENST00000679428.1:ENST00000439676.5:ENST00000345541.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	141	2	2.58715	2.6383	2.68945	0.00300718	5.50287e-4	0.0493883	0.0213346
chr12	54281094	54281161	5143372	0	+	0.522388	(0.515,0.57]	chr12	485530	1	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HNRNPA1	ENSG00000135486.19	ENST00000546500.5:ENST00000677385.1:ENST00000677210.1:ENST00000677375.1:ENST00000677249.1:ENST00000676725.1:ENST00000678418.1:ENST00000550482.2:ENST00000340913.11:ENST00000679101.1:ENST00000547566.5:ENST00000547708.5:ENST00000679228.1:ENST00000547870.2:ENST00000551702.5:ENST00000678365.1:ENST00000330752.12:ENST00000676794.1:ENST00000547276.5:ENST00000678919.1:ENST00000678690.1:ENST00000677220.1:ENST00000678077.1:ENST00000548688.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	23	287	2	2.05241	2.638185	3.22396	3.05238e-4	9.41614e-7	0.0155972	6.03708e-4
chrX	124041189	124041287	7717555	0	+	0.306122	(0.28,0.32]	chrX	789513	4	EXON_MRNA	EXON_MRNA:INTRON	STAG2	ENSG00000101972.20	ENST00000218089.13:ENST00000455404.5:ENST00000483575.5:ENST00000687810.1:ENST00000687071.1:ENST00000469481.1:ENST00000371160.5:ENST00000435103.5:ENST00000687852.1:ENST00000371145.8:ENST00000692982.1:ENST00000371157.7:ENST00000691035.1:ENST00000686802.1:ENST00000691383.1:ENST00000686127.1:ENST00000371144.7:ENST00000458176.5:ENST00000466748.5:ENST00000471107.1:ENST00000428941.5:ENST00000435215.5:ENST00000693144.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	97	2	2.00786	2.63818	3.2685	0.00687366	0.00432734	0.0749442	0.0579331
chr2	95105526	95105625	1177450	0	-	0.444444	(0.44,0.476]	chr2	125631	4	INTRON	INTRON	MRPS5	ENSG00000289685.1	ENST00000272418.7:ENST00000345084.10:ENST00000695437.1:ENST00000695436.1:ENST00000695435.1:ENST00000695434.1:ENST00000695433.1:ENST00000695432.1:ENST00000695439.1:ENST00000461916.6:ENST00000475895.6:ENST00000482568.1:ENST00000695440.1:ENST00000464458.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	62	2	1.69402	2.6381050000000004	3.58219	0.0456129	8.57842e-4	0.164236	0.0267428
chr6	157919741	157919840	3016741	0	+	0.272727	[0,0.28]	chr6	281411	94	INTRON	INTRON	SNX9	ENSG00000130340.17	ENST00000680863.1:ENST00000679814.1:ENST00000680464.1:ENST00000681186.1:ENST00000679732.1:ENST00000681183.1:ENST00000681534.1:ENST00000681651.1:ENST00000680089.1:ENST00000680078.1:ENST00000680974.1:ENST00000680095.1:ENST00000681138.1:ENST00000392185.8:ENST00000679790.1:ENST00000680495.1:ENST00000679691.1:ENST00000681881.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	86	2	2.02929	2.63794	3.24659	0.0189138	0.00570201	0.118303	0.0656459
chr17	70071431	70071531	6828162	0	-	0.34	(0.32,0.35]	chr17	675005	174	INTRON	INTRON	ENSG00000230258	ENSG00000230258.6	ENST00000435112.5:ENST00000587325.1	lncRNA	lncRNA	lncRNA	lncRNA	3	59	2	1.77704	2.6378649999999997	3.49869	0.0719969	0.00108004	0.187322	0.0300133
chr2	68224622	68224722	1146245	0	-	0.42	(0.408,0.44]	chr2	122396	71	INTRON	INTRON	PPP3R1	ENSG00000221823.11	ENST00000234310.8:ENST00000409752.5:ENST00000409377.1	protein_coding	protein_coding	protein_coding	protein_coding	8	90	2	1.39837	2.6378399999999997	3.87731	0.0342165	2.32969e-4	0.146942	0.013966
chr6	147680739	147680839	2990803	0	+	0.33	(0.32,0.35]	chr6	280163	42	INTRON	INTRON	ENSG00000227681	ENSG00000227681.5	ENST00000427015.1:ENST00000432506.5:ENST00000442094.5	lncRNA	lncRNA	lncRNA	lncRNA	3	58	2	2.04237	2.6378399999999997	3.23331	0.0375542	0.00315414	0.140222	0.0515261
chr20	47253324	47253423	7348466	0	-	0.444444	(0.44,0.476]	chr20	749282	35	INTRON	INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000467200.6:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000468376.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	51	2	2.38519	2.63783	2.89047	0.012193	0.00955699	0.0910127	0.0863913
chr20	35733489	35733587	7336464	0	-	0.571429	(0.57,1]	chr20	747476	8	INTRON	INTRON	RBM39	ENSG00000131051.24	ENST00000253363.11:ENST00000639702.1:ENST00000656873.1:ENST00000463004.5:ENST00000361162.10:ENST00000461283.5:ENST00000403542.6:ENST00000338163.10:ENST00000528062.7:ENST00000429968.5:ENST00000444878.5:ENST00000665058.1:ENST00000374038.7:ENST00000412738.5:ENST00000434927.5:ENST00000425184.5:ENST00000481037.5:ENST00000455343.5:ENST00000416108.5:ENST00000426951.5:ENST00000477334.1:ENST00000442447.5:ENST00000449489.5:ENST00000433027.5:ENST00000487604.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	53	2	2.09207	2.637795	3.18352	0.0121228	3.76713e-5	0.090965	0.00491469
chr18	9492219	9492319	6871301	0	+	0.43	(0.408,0.44]	chr18	680716	124	INTRON	INTRON	RALBP1	ENSG00000017797.13	ENST00000019317.8:ENST00000585015.6:ENST00000383432.8:ENST00000609094.2:ENST00000458039.3:ENST00000577221.1	protein_coding	protein_coding	protein_coding	protein_coding	5	81	2	2.08486	2.6377550000000003	3.19065	0.0145898	3.2984e-4	0.0981689	0.0161352
chr6	154839542	154839642	3002901	0	+	0.28	[0,0.28]	chr6	280851	54	INTRON	INTRON	TIAM2	ENSG00000146426.19	ENST00000461783.7:ENST00000535064.1:ENST00000460692.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	53	2	2.63238	2.637735	2.64309	0.0308646	0.0259691	0.133676	0.13151
chr1	36268464	36268563	73373	0	+	0.434343	(0.408,0.44]	chr1	9377	86	INTRON	INTRON	THRAP3	ENSG00000054118.15	ENST00000469141.6:ENST00000648638.1:ENST00000354618.10	protein_coding	protein_coding	protein_coding	protein_coding	2	38	2	2.18807	2.637725	3.08738	0.0708044	0.00478231	0.184528	0.0636201
chr21	44776117	44776214	7468466	0	-	0.412371	(0.408,0.44]	chr21	761149	8	INTRON	INTRON	UBE2G2	ENSG00000184787.19	ENST00000345496.7:ENST00000497630.5:ENST00000477954.5:ENST00000491513.5:ENST00000330942.9:ENST00000478200.1:ENST00000497664.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	20	292	2	2.424	2.6376850000000003	2.85137	4.99247e-5	4.12312e-5	0.00578948	0.00544488
chr7	128757681	128757779	3408565	0	+	0.27551	[0,0.28]	chr7	318443	26	INTRON	INTRON	CALU	ENSG00000128595.17	ENST00000535011.6:ENST00000542996.6:ENST00000249364.9:ENST00000449187.6:ENST00000479257.5	protein_coding	protein_coding	protein_coding	protein_coding	3	72	2	1.89998	2.63764	3.3753	0.0599553	0.00242466	0.169548	0.0454587
chr12	110401631	110401731	5409178	0	-	0.59	(0.57,1]	chr12	516463	48	INTRON	INTRON	ANAPC7:ENSG00000258210	ENSG00000196510.14:ENSG00000258210.1	ENST00000455511.9:ENST00000450008.3:ENST00000552170.2:ENST00000550231.1:ENST00000464697.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay	6	48	2	2.2837	2.637585	2.99147	0.00256797	6.75142e-4	0.0466761	0.0237705
chr11	46578831	46578931	4947108	0	-	0.39	(0.378,0.408]	chr11	463525	294	INTRON	INTRON	AMBRA1	ENSG00000110497.15	ENST00000683756.1:ENST00000534300.5:ENST00000533727.5:ENST00000314845.7:ENST00000458649.6:ENST00000528950.1:ENST00000531542.1:ENST00000526606.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	125	2	2.15622	2.63746	3.1187	0.0013108	7.19674e-4	0.0333932	0.0246343
chr1	75786524	75786599	144616	0	+	0.426667	(0.408,0.44]	chr1	16316	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ACADM:RABGGTB	ENSG00000117054.15:ENSG00000137955.16	ENST00000528016.1:ENST00000496055.5:ENST00000485459.5:ENST00000473406.5:ENST00000370826.3:ENST00000497648.1:ENST00000319942.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	13	201	2	2.16538	2.63745	3.10952	8.63582e-4	2.68353e-5	0.0266494	0.0043033
chr9	83706101	83706201	4273064	0	-	0.35	(0.32,0.35]	chr9	392981	196	INTRON	INTRON	UBQLN1	ENSG00000135018.14	ENST00000376395.9:ENST00000257468.11:ENST00000529923.1	protein_coding	protein_coding	protein_coding	protein_coding	3	59	2	2.30731	2.637385	2.96746	0.0176772	0.00815799	0.10525	0.0810802
chr6	31830065	31830159	2843825	0	+	0.329787	(0.32,0.35]	chr6	267901	3	UTR3	UTR3:EXON_MRNA	HSPA1B	ENSG00000204388.7	ENST00000375650.5	protein_coding	protein_coding	protein_coding	protein_coding	11	182	2	1.93639	2.63738	3.33837	0.00333641	8.02858e-5	0.0528877	0.00804467
chr1	113950445	113950544	192008	0	+	0.444444	(0.44,0.476]	chr1	21149	86	INTRON	INTRON	HIPK1	ENSG00000163349.22	ENST00000426820.7:ENST00000626993.2:ENST00000369559.8:ENST00000369558.5:ENST00000369561.8:ENST00000369555.6	protein_coding	protein_coding	protein_coding	protein_coding	3	50	2	2.59888	2.6372999999999998	2.67572	0.0212064	0.00487719	0.113017	0.0640618
chr6	68805089	68805189	2888017	0	+	0.45	(0.44,0.476]	chr6	273730	1653	INTRON	INTRON	ADGRB3	ENSG00000135298.15	ENST00000370598.6:ENST00000684661.1:ENST00000546190.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	50	2	2.59888	2.6372999999999998	2.67572	0.0212064	0.00487719	0.113017	0.0640618
chr19	2134178	2134275	7115372	0	-	0.494845	(0.476,0.515]	chr19	715251	3	INTRON	INTRON	AP3D1	ENSG00000065000.19	ENST00000643116.3:ENST00000345016.9:ENST00000643010.1:ENST00000591284.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	130	2	2.37295	2.63727	2.90159	0.00193884	1.74832e-4	0.0409025	0.01216
chr2	74177118	74177217	1157113	0	-	0.535354	(0.515,0.57]	chr2	123720	40	INTRON	INTRON	MOB1A	ENSG00000114978.18	ENST00000396049.5:ENST00000497054.5:ENST00000495286.5:ENST00000463975.1:ENST00000488006.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	88	2	2.10989	2.63722	3.16455	0.00378898	3.23741e-4	0.0542459	0.0159645
chr17	57262433	57262519	6632804	0	+	0.325581	(0.32,0.35]	chr17	647994	1	SS5_PROX	SS5_PROX:INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000581776.5:ENST00000581523.5:ENST00000674961.1:ENST00000582453.5:ENST00000675656.1:ENST00000322684.7:ENST00000579590.5:ENST00000579531.5:ENST00000676073.1:ENST00000579483.1:ENST00000675822.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	43	2	2.30673	2.637095	2.96746	0.0584434	0.00815799	0.167723	0.0810802
chr4	102865117	102865217	2213746	0	-	0.33	(0.32,0.35]	chr4	216779	371	INTRON	INTRON	UBE2D3	ENSG00000109332.20	ENST00000338145.7:ENST00000357194.10:ENST00000508238.5	protein_coding	protein_coding	protein_coding	protein_coding	2	43	2	2.30673	2.637095	2.96746	0.0584434	0.00815799	0.167723	0.0810802
chr5	138531371	138531470	2732551	0	-	0.343434	(0.32,0.35]	chr5	257415	13	INTRON	INTRON	ETF1	ENSG00000120705.13	ENST00000360541.10:ENST00000499810.6:ENST00000503014.5:ENST00000512198.1:ENST00000572514.5:ENST00000507939.5:ENST00000514005.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	43	2	2.30673	2.637095	2.96746	0.0584434	0.00815799	0.167723	0.0810802
chr9	5004790	5004890	4096018	0	+	0.33	(0.32,0.35]	chr9	373235	184	INTRON	INTRON	JAK2	ENSG00000096968.14	ENST00000636127.1:ENST00000476574.5:ENST00000381652.4	protein_coding	protein_coding	protein_coding	protein_coding	2	43	2	2.30673	2.637095	2.96746	0.0584434	0.00815799	0.167723	0.0810802
chr1	54382983	54383083	463527	0	-	0.27	[0,0.28]	chr1	55784	263	INTRON	INTRON	SSBP3	ENSG00000157216.16	ENST00000610401.5:ENST00000357475.9:ENST00000371319.8:ENST00000417664.7:ENST00000533946.6:ENST00000371320.8:ENST00000525990.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	87	2	1.66484	2.63706	3.60928	0.0617844	9.66382e-4	0.174281	0.0285961
chr1	28927265	28927365	59083	0	+	0.34	(0.32,0.35]	chr1	7621	121	INTRON	INTRON	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000647918.1:ENST00000646800.1:ENST00000644342.1:ENST00000646189.1:ENST00000482464.6:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000646260.1:ENST00000373798.5:ENST00000644600.1:ENST00000649674.1:ENST00000643173.1:ENST00000343067.9:ENST00000644780.1:ENST00000650265.1:ENST00000648181.1:ENST00000643604.1:ENST00000648891.1:ENST00000373797.2:ENST00000349460.9:ENST00000645184.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	144	2	2.18183	2.636975	3.09212	0.00419013	1.51463e-4	0.0572176	0.0106137
chr11	64200693	64200793	4802192	0	+	0.4	(0.378,0.408]	chr11	445295	4	SS5_PROX	SS5_PROX:INTRON	STIP1	ENSG00000168439.17	ENST00000358794.9:ENST00000305218.9:ENST00000536973.5:ENST00000538945.5:ENST00000540887.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	63	2	1.8374	2.6369249999999997	3.43645	0.0299228	0.00171162	0.142135	0.037419
chr6	169696861	169696961	3267078	0	-	0.47	(0.44,0.476]	chr6	303259	14	INTRON	INTRON	WDR27	ENSG00000184465.16	ENST00000448612.6:ENST00000648472.1:ENST00000423258.5:ENST00000647790.1:ENST00000647873.1:ENST00000649303.1:ENST00000647889.1:ENST00000648017.1:ENST00000650296.1:ENST00000546953.1:ENST00000649806.1:ENST00000474018.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	142	2	2.588	2.636915	2.68583	4.74756e-4	3.91317e-4	0.0201674	0.0178091
chr11	68323088	68323187	4816040	0	+	0.424242	(0.408,0.44]	chr11	448753	99	INTRON	INTRON	LRP5	ENSG00000162337.12	ENST00000294304.12:ENST00000529993.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	38	2	2.49258	2.6369	2.78122	0.0314608	0.015812	0.144381	0.101453
chr17	44714831	44714930	6615918	0	+	0.414141	(0.408,0.44]	chr17	645215	51	INTRON	INTRON	DBF4B	ENSG00000161692.18	ENST00000393547.6:ENST00000528353.5:ENST00000528766.5:ENST00000315005.8:ENST00000526924.5:ENST00000526915.5:ENST00000525140.5:ENST00000531699.5:ENST00000532789.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	38	2	2.49258	2.6369	2.78122	0.0314608	0.015812	0.144381	0.101453
chr20	62182222	62182319	7297884	0	+	0.412371	(0.408,0.44]	chr20	742310	32	UTR3	UTR3:EXON_MRNA	SS18L1	ENSG00000184402.15	ENST00000331758.8	protein_coding	protein_coding	protein_coding	protein_coding	2	38	2	2.49258	2.6369	2.78122	0.0314608	0.015812	0.144381	0.101453
chr21	6319396	6319493	7364763	0	+	0.42268	(0.408,0.44]	chr21	751647	4	INTRON	INTRON	ENSG00000278903	ENSG00000278903.4	ENST00000688828.1:ENST00000688458.1:ENST00000689306.1:ENST00000692898.1:ENST00000692318.1:ENST00000624576.3:ENST00000623738.3:ENST00000623989.4:ENST00000692237.1:ENST00000692046.1:ENST00000689354.1:ENST00000624165.1	lncRNA	lncRNA	lncRNA	lncRNA	2	38	2	2.49258	2.6369	2.78122	0.0314608	0.015812	0.144381	0.101453
chr4	499582	499675	1907348	0	+	0.462366	(0.44,0.476]	chr4	191091	2	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	PIGG	ENSG00000174227.16	ENST00000453061.7:ENST00000504187.5:ENST00000310340.9:ENST00000504346.5:ENST00000503111.5:ENST00000502311.1:ENST00000511448.5:ENST00000383028.8:ENST00000506402.5:ENST00000509768.1:ENST00000514953.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	50	2	2.14573	2.63686	3.12799	0.0238593	0.0050635	0.129075	0.0621733
chr2	167907367	167907467	1258876	0	-	0.37	(0.35,0.378]	chr2	133340	62	INTRON	INTRON	B3GALT1-AS1	ENSG00000235335.3	ENST00000430546.2:ENST00000657553.1:ENST00000670221.1:ENST00000436982.2	lncRNA	lncRNA	lncRNA	lncRNA	4	66	2	1.6122	2.6368549999999997	3.66151	0.0616849	4.717e-4	0.174021	0.0196294
chr10	21554379	21554477	4404612	0	+	0.397959	(0.378,0.408]	chr10	406433	21	INTRON	INTRON	MLLT10	ENSG00000078403.17	ENST00000651097.1:ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000377100.8:ENST00000377091.7:ENST00000650772.1:ENST00000651298.1:ENST00000652497.1:ENST00000495130.5:ENST00000377059.7:ENST00000621220.4:ENST00000476557.5:ENST00000462999.5:ENST00000430455.2:ENST00000479634.1:ENST00000480415.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	86	2	1.8004	2.63681	3.47322	0.0096453	0.00147803	0.0870523	0.0348908
chr7	121176833	121176933	3395537	0	+	0.33	(0.32,0.35]	chr7	317781	268	INTRON	INTRON	CPED1	ENSG00000106034.18	ENST00000310396.10:ENST00000450913.6:ENST00000423795.5:ENST00000466055.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	43	2	2.6321	2.636695	2.64129	0.0268	0.0222819	0.124303	0.123349
chrX	141908923	141909013	7729137	0	+	0.322222	(0.32,0.35]	chrX	790861	2	UTR3	UTR3:EXON_MRNA	MAGEC1	ENSG00000155495.9	ENST00000285879.5	protein_coding	protein_coding	protein_coding	protein_coding	2	43	2	2.6321	2.636695	2.64129	0.0268	0.0222819	0.124303	0.123349
chr2	27404912	27405012	1087254	0	-	0.37	(0.35,0.378]	chr2	116461	174	INTRON	INTRON	PPM1G	ENSG00000115241.11	ENST00000472077.1:ENST00000344034.5:ENST00000484925.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	58	2	1.82887	2.63661	3.44435	0.0584878	0.00179102	0.189395	0.0380316
chr3	72415211	72415311	1745607	0	-	0.3	(0.28,0.32]	chr3	177368	347	INTRON	INTRON	RYBP	ENSG00000163602.12	ENST00000477973.5	protein_coding	protein_coding	protein_coding	protein_coding	5	89	2	2.31129	2.63658	2.96187	0.0114995	0.00319044	0.0889104	0.0520345
chr6	140496553	140496653	2971422	0	+	0.44	(0.408,0.44]	chr6	279019	1811	INTRON	INTRON	ENSG00000288714	ENSG00000288714.1	ENST00000684511.1	lncRNA	lncRNA	lncRNA	lncRNA	4	68	2	2.55103	2.636555	2.72208	0.00587353	0.00364449	0.0690758	0.0535094
chr12	56676840	56676939	5335966	0	-	0.484848	(0.476,0.515]	chr12	510192	34	INTRON	INTRON	PTGES3	ENSG00000110958.16	ENST00000537473.2:ENST00000614328.4:ENST00000262033.11:ENST00000414274.7:ENST00000436399.6:ENST00000448157.6:ENST00000456859.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	68	2	2.43242	2.6365499999999997	2.84068	0.0091895	0.00217133	0.0855292	0.0417893
chr2	26034433	26034520	713100	0	+	0.678161	(0.57,1]	chr2	82433	5	UTR5	UTR5:EXON_MRNA	RAB10	ENSG00000084733.11	ENST00000264710.5:ENST00000495146.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	13	103	2	2.40312	2.636535	2.86995	1.96936e-4	1.3389e-5	0.0122531	0.00288846
chr3	50012311	50012411	1423683	0	+	0.46	(0.44,0.476]	chr3	149994	124	INTRON	INTRON	RBM6	ENSG00000004534.15	ENST00000442092.5:ENST00000443081.5:ENST00000419610.5:ENST00000441115.5:ENST00000422955.5:ENST00000454079.5:ENST00000266022.9:ENST00000425608.5:ENST00000434592.5:ENST00000464013.5:ENST00000483350.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	61	2	2.07016	2.63653	3.2029	0.0151815	0.00308681	0.0994339	0.0510391
chr7	124850697	124850793	3632962	0	-	0.375	(0.35,0.378]	chr7	337649	17	INTRON	INTRON	POT1	ENSG00000128513.16	ENST00000430927.6:ENST00000357628.8:ENST00000393329.5:ENST00000653274.1:ENST00000661898.1:ENST00000664330.1:ENST00000657892.1:ENST00000662531.1:ENST00000653241.1:ENST00000653892.1:ENST00000664366.1:ENST00000655761.1:ENST00000668382.1:ENST00000654766.1:ENST00000657333.1:ENST00000653819.1:ENST00000609106.5:ENST00000607932.5:ENST00000608057.5:ENST00000446993.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	55	2	2.28125	2.6364900000000002	2.99173	0.0182271	0.00713365	0.107842	0.0756118
chr19	6416130	6416197	7128630	0	-	0.537313	(0.515,0.57]	chr19	717703	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:PRIMIRNA:INTRON	KHSRP:MIR3940	ENSG00000088247.19:ENSG00000284159.1	ENST00000600480.2:ENST00000398148.7:ENST00000595223.5:ENST00000579148.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:primary_miRNA	2	32	2	2.52504	2.63638	2.74772	0.029342	0.0142192	0.128055	0.103638
chr4	53378210	53378306	1959447	0	+	0.5	(0.476,0.515]	chr4	196392	4	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	FIP1L1	ENSG00000145216.16	ENST00000337488.11:ENST00000511376.5:ENST00000358575.9:ENST00000507922.5:ENST00000306932.10:ENST00000505125.5:ENST00000513975.5:ENST00000510668.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	91	2	2.21313	2.636355	3.05958	0.00401502	8.34691e-4	0.0578059	0.0266389
chr13	20039401	20039500	5453253	0	+	0.282828	(0.28,0.32]	chr13	522513	21	INTRON	INTRON	ZMYM2	ENSG00000121741.17	ENST00000382874.6:ENST00000610343.5:ENST00000382871.3:ENST00000382883.7:ENST00000382870.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	63	2	1.96376	2.636345	3.30893	0.0480066	0.00260504	0.153019	0.0470772
chr16	21839688	21839783	6461618	0	-	0.442105	(0.44,0.476]	chr16	623398	5	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NPIPB4	ENSG00000185864.18	ENST00000415645.6:ENST00000682606.1:ENST00000165086.8:ENST00000545367.5:ENST00000542133.5:ENST00000543660.1:ENST00000541329.1:ENST00000614197.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	37	2	2.38219	2.63633	2.89047	0.045456	0.00955699	0.149888	0.0863913
chr16	89464774	89464874	6543344	0	-	0.45	(0.44,0.476]	chr16	634281	331	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	37	2	2.38219	2.63633	2.89047	0.045456	0.00955699	0.149888	0.0863913
chr3	33040414	33040514	1650579	0	-	0.45	(0.44,0.476]	chr3	169229	25	INTRON	INTRON	GLB1	ENSG00000170266.16	ENST00000399402.7:ENST00000307363.10:ENST00000307377.12:ENST00000482097.5:ENST00000485698.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	37	2	2.38219	2.63633	2.89047	0.045456	0.00955699	0.149888	0.0863913
chr6	160087056	160087151	3024207	0	+	0.473684	(0.44,0.476]	chr6	282245	16	INTRON	INTRON	IGF2R	ENSG00000197081.16	ENST00000676781.1:ENST00000677704.1:ENST00000356956.6:ENST00000650503.1:ENST00000475834.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	37	2	2.38219	2.63633	2.89047	0.045456	0.00955699	0.149888	0.0863913
chr12	110287951	110288051	5226165	0	+	0.54	(0.515,0.57]	chr12	495234	48	INTRON	INTRON	ATP2A2	ENSG00000174437.18	ENST00000552636.2:ENST00000308664.10:ENST00000539276.7:ENST00000377685.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	14	133	2	1.70261	2.63629	3.56997	0.00368446	4.4136e-5	0.0561162	0.00570424
chr1	206637861	206637961	301665	0	+	0.31	(0.28,0.32]	chr1	34669	1	SS5_PROX	SS5_PROX:INTRON	DYRK3	ENSG00000143479.18	ENST00000367109.8:ENST00000367108.7:ENST00000489878.1:ENST00000649163.1:ENST00000441486.5:ENST00000367106.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	63	2	2.09794	2.636235	3.17453	0.0340483	0.00429297	0.134863	0.0599065
chr17	21010160	21010258	6742826	0	-	0.428571	(0.408,0.44]	chr17	662022	18	INTRON	INTRON	USP22	ENSG00000124422.12	ENST00000261497.9:ENST00000537526.6:ENST00000455117.6:ENST00000579645.5:ENST00000478443.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	69	2	2.11447	2.63623	3.15799	0.0285207	3.8998e-4	0.12666	0.0177751
chr2	73764940	73765039	1156206	0	-	0.353535	(0.35,0.378]	chr2	123602	17	INTRON	INTRON	DUSP11	ENSG00000144048.11	ENST00000696050.1:ENST00000696051.1:ENST00000272444.8:ENST00000696052.1:ENST00000696053.1:ENST00000696054.1:ENST00000696055.1:ENST00000696056.1:ENST00000480948.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	65	2	2.28182	2.63613	2.99044	0.00894806	0.00637232	0.0799922	0.0724821
chr7	128550125	128550225	3407545	0	+	0.36	(0.35,0.378]	chr7	318333	160	INTRON	INTRON	ENSG00000280828	ENSG00000280828.1	ENST00000479267.2	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	4	65	2	2.28182	2.63613	2.99044	0.00894806	0.00637232	0.0799922	0.0724821
chr1	227734290	227734377	651766	0	-	0.367816	(0.35,0.378]	chr1	77128	4	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	JMJD4	ENSG00000081692.13	ENST00000485807.1:ENST00000620518.5:ENST00000438896.3:ENST00000480590.1:ENST00000465251.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	56	2	2.4077	2.636105	2.86451	0.0122026	0.0109111	0.0923273	0.0910127
chr16	70269117	70269217	6510283	0	-	0.46	(0.44,0.476]	chr16	630568	1	SS5_PROX	SS5_PROX:INTRON	AARS1	ENSG00000090861.17	ENST00000674963.1:ENST00000675643.1:ENST00000675917.1:ENST00000674691.1:ENST00000261772.13:ENST00000675569.1:ENST00000676209.1:ENST00000676211.1:ENST00000676040.1:ENST00000675953.1:ENST00000675691.1:ENST00000676004.1:ENST00000675270.1:ENST00000675403.1:ENST00000676212.1:ENST00000675045.1:ENST00000675035.1:ENST00000676168.1:ENST00000674652.1:ENST00000675133.1:ENST00000675120.1:ENST00000674811.1:ENST00000674512.1:ENST00000675853.1:ENST00000565361.3:ENST00000676247.1:ENST00000674848.1:ENST00000674962.1:ENST00000675371.1:ENST00000675986.1:ENST00000674768.1:ENST00000675297.1:ENST00000675751.1:ENST00000564359.6:ENST00000675338.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	80	2	2.18344	2.6361049999999997	3.08877	0.0102102	5.52878e-4	0.0850389	0.021371
chr17	31166633	31166731	6591853	0	+	0.459184	(0.44,0.476]	chr17	641077	29	INTRON	INTRON	NF1	ENSG00000196712.20	ENST00000696138.1:ENST00000356175.7:ENST00000487476.5:ENST00000691014.1:ENST00000358273.9:ENST00000431387.8:ENST00000579081.5:ENST00000489712.6:ENST00000495910.6:ENST00000490416.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	37	2	2.60774	2.636035	2.66433	0.0255874	0.0194358	0.120269	0.119831
chr17	38884647	38884747	6606552	0	+	0.46	(0.44,0.476]	chr17	643195	61	INTRON	INTRON	LASP1	ENSG00000002834.18	ENST00000433206.6:ENST00000585841.5:ENST00000318008.11:ENST00000443937.7:ENST00000584106.1:ENST00000435347.7:ENST00000419929.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	37	2	2.60774	2.636035	2.66433	0.0255874	0.0194358	0.120269	0.119831
chr17	42595833	42595932	6773520	0	-	0.454545	(0.44,0.476]	chr17	667215	33	INTRON	INTRON	RETREG3	ENSG00000141699.11	ENST00000589797.5:ENST00000309428.10:ENST00000585894.5:ENST00000586870.5:ENST00000585726.5:ENST00000591547.5:ENST00000593251.5:ENST00000588423.1:ENST00000586796.1:ENST00000590541.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	37	2	2.60774	2.636035	2.66433	0.0255874	0.0194358	0.120269	0.119831
chr19	11522523	11522614	7137661	0	-	0.472527	(0.44,0.476]	chr19	719996	6	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	ECSIT	ENSG00000130159.15	ENST00000252440.11:ENST00000270517.12:ENST00000588998.5:ENST00000690346.1:ENST00000585318.6:ENST00000686541.1:ENST00000688351.1:ENST00000417981.6:ENST00000591104.5:ENST00000592312.5:ENST00000691750.1:ENST00000590480.1:ENST00000592665.1:ENST00000586149.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	37	2	2.60774	2.636035	2.66433	0.0255874	0.0194358	0.120269	0.119831
chr19	12397343	12397439	7139526	0	-	0.447917	(0.44,0.476]	chr19	720272	24	INTRON	INTRON	ZNF799	ENSG00000196466.10	ENST00000430385.3:ENST00000419318.5:ENST00000595766.1	protein_coding	protein_coding	protein_coding	protein_coding	2	37	2	2.60774	2.636035	2.66433	0.0255874	0.0194358	0.120269	0.119831
chr20	62041605	62041705	7360675	0	-	0.45	(0.44,0.476]	chr20	750714	265	INTRON	INTRON	TAF4	ENSG00000130699.20	ENST00000252996.9:ENST00000608887.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	37	2	2.60774	2.636035	2.66433	0.0255874	0.0194358	0.120269	0.119831
chr5	171409052	171409150	2546792	0	+	0.459184	(0.44,0.476]	chr5	243128	9	INTRON	INTRON	NPM1	ENSG00000181163.14	ENST00000517671.5:ENST00000676613.1:ENST00000678186.1:ENST00000678267.1:ENST00000677297.1:ENST00000521672.6:ENST00000679190.1:ENST00000677467.1:ENST00000678280.1:ENST00000676625.1:ENST00000351986.10:ENST00000676504.1:ENST00000676589.1:ENST00000677357.1:ENST00000296930.10:ENST00000521260.2:ENST00000518587.2:ENST00000678774.1:ENST00000677600.1:ENST00000677741.1:ENST00000677325.1:ENST00000677672.1:ENST00000677907.1:ENST00000677904.1:ENST00000677682.1:ENST00000524204.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	37	2	2.60774	2.636035	2.66433	0.0255874	0.0194358	0.120269	0.119831
chr6	35890102	35890199	3088512	0	-	0.474227	(0.44,0.476]	chr6	288879	8	INTRON	INTRON	SRPK1	ENSG00000096063.16	ENST00000373825.7:ENST00000423325.6:ENST00000346162.10:ENST00000361690.7:ENST00000510290.5:ENST00000373821.6:ENST00000508473.5:ENST00000512445.5:ENST00000513367.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	37	2	2.60774	2.636035	2.66433	0.0255874	0.0194358	0.120269	0.119831
chr4	78782712	78782811	1981448	0	+	0.292929	(0.28,0.32]	chr4	198463	56	INTRON	INTRON	BMP2K	ENSG00000138756.19	ENST00000389010.7:ENST00000502613.3:ENST00000502871.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	13	219	2	2.02343	2.6359649999999997	3.2485	0.00160684	1.66867e-4	0.036803	0.011853
chr18	9938162	9938261	6873591	0	+	0.30303	(0.28,0.32]	chr18	680892	7	INTRON	INTRON	VAPA	ENSG00000101558.14	ENST00000400000.7:ENST00000340541.4:ENST00000584796.5:ENST00000583879.5:ENST00000583475.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	14	251	2	2.15891	2.635915	3.11292	8.00588e-4	1.30653e-4	0.0258804	0.0103941
chr10	45875988	45876088	4607691	0	-	0.47	(0.44,0.476]	chr10	424444	125	INTRON	INTRON	PARGP1	ENSG00000239883.9	ENST00000440803.7:ENST00000688192.1:ENST00000686367.1:ENST00000693310.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	4	67	2	2.59888	2.63585	2.67282	0.00487719	0.00433875	0.0640618	0.0579868
chr17	31096068	31096168	6591144	0	+	0.49	(0.476,0.515]	chr17	641053	3	INTRON	INTRON	NF1	ENSG00000196712.20	ENST00000696138.1:ENST00000356175.7:ENST00000487476.5:ENST00000691014.1:ENST00000358273.9:ENST00000431387.8:ENST00000579081.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	110	2	2.04777	2.63585	3.22393	0.00319642	3.84737e-4	0.05208	0.0182343
chr10	73777656	73777752	4454106	0	+	0.46875	(0.44,0.476]	chr10	411177	16	INTRON	INTRON	FUT11	ENSG00000196968.11	ENST00000489264.2	protein_coding	processed_transcript	protein_coding	processed_transcript	5	81	2	2.44812	2.635815	2.82351	0.00368597	0.00191049	0.0535094	0.0403772
chr3	48977424	48977521	1422066	0	+	0.556701	(0.515,0.57]	chr3	149556	21	INTRON	INTRON	ARIH2	ENSG00000177479.20	ENST00000449376.5:ENST00000490095.5:ENST00000356401.9:ENST00000452385.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	43	2	2.01737	2.635745	3.25412	0.0352218	0.00224554	0.137535	0.0435144
chr7	136120086	136120186	3431454	0	+	0.32	(0.28,0.32]	chr7	319911	25	INTRON	INTRON	ENSG00000232053	ENSG00000232053.7	ENST00000657456.1:ENST00000668062.1:ENST00000668668.1:ENST00000445293.6:ENST00000659747.1:ENST00000668896.1:ENST00000435996.1	lncRNA	lncRNA	lncRNA	lncRNA	3	64	2	1.76293	2.6356450000000002	3.50836	0.0766478	0.00117393	0.196164	0.0316446
chr16	2133074	2133174	6431326	0	-	0.53	(0.515,0.57]	chr16	618727	133	INTRON	INTRON	PKD1	ENSG00000008710.20	ENST00000262304.9:ENST00000423118.5	protein_coding	protein_coding	protein_coding	protein_coding	3	43	2	2.21273	2.63556	3.05839	0.0196151	0.00485936	0.109486	0.0640618
chrX	101159431	101159531	7694767	0	+	0.52	(0.515,0.57]	chrX	787429	109	INTRON	INTRON	CENPI	ENSG00000102384.14	ENST00000684367.1:ENST00000423383.3:ENST00000682095.1:ENST00000372927.5	protein_coding	protein_coding	protein_coding	protein_coding	3	43	2	2.21273	2.63556	3.05839	0.0196151	0.00485936	0.109486	0.0640618
chr11	5497265	5497365	4898195	0	-	0.52	(0.515,0.57]	chr11	459195	280	INTRON	INTRON	HBG2:ENSG00000239920:HBE1:OR51B5	ENSG00000196565.15:ENSG00000239920.2:ENSG00000213931.7:ENSG00000167355.8	ENST00000380252.6:ENST00000380259.7:ENST00000292896.3:ENST00000380237.5:ENST00000420726.6:ENST00000420465.6:ENST00000415970.6:ENST00000418729.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:nonsense_mediated_decay:processed_transcript	4	57	2	2.53845	2.635515	2.73258	0.00632226	0.00260192	0.0687526	0.0470772
chr15	92901375	92901474	6103699	0	+	0.333333	(0.32,0.35]	chr15	581388	1	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	ENSG00000279765:CHD2	ENSG00000279765.3:ENSG00000173575.22	ENST00000629685.2:ENST00000630790.1:ENST00000626874.2:ENST00000627622.1:ENST00000394196.9:ENST00000635856.1:ENST00000420239.7:ENST00000628375.2:ENST00000629346.2:ENST00000625990.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	24	353	2	2.08692	2.635485	3.18405	2.92112e-4	3.18324e-5	0.0152358	0.00471653
chr11	86021767	86021866	5014363	0	-	0.292929	(0.28,0.32]	chr11	472995	65	INTRON	INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000630913.2:ENST00000528398.5:ENST00000356360.9:ENST00000534412.5:ENST00000531771.5:ENST00000531558.1:ENST00000531930.5:ENST00000532041.5:ENST00000525162.5:ENST00000528256.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	106	2	1.90234	2.635445	3.36855	0.00740298	0.00305882	0.0770422	0.0494118
chr16	14548705	14548805	6449006	0	-	0.48	(0.476,0.515]	chr16	621213	74	INTRON	INTRON	PARN	ENSG00000140694.17	ENST00000651865.1:ENST00000437198.7:ENST00000651348.1:ENST00000650990.1:ENST00000651760.1:ENST00000652541.1:ENST00000652727.1:ENST00000652066.1:ENST00000651300.1:ENST00000420015.6:ENST00000652051.1:ENST00000341484.11:ENST00000539279.5:ENST00000651049.1:ENST00000650960.1:ENST00000651634.1:ENST00000564113.6:ENST00000564904.5:ENST00000652411.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	38	2	2.38442	2.63536	2.8863	0.0417472	0.0111679	0.161736	0.0877435
chr3	99881529	99881629	1462537	0	+	0.49	(0.476,0.515]	chr3	153488	631	INTRON	INTRON	CMSS1	ENSG00000184220.12	ENST00000463526.1:ENST00000421999.8:ENST00000491299.5:ENST00000496116.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	38	2	2.38442	2.63536	2.8863	0.0417472	0.0111679	0.161736	0.0877435
chr9	112161194	112161294	4316641	0	-	0.51	(0.476,0.515]	chr9	396993	32	INTRON	INTRON	SUSD1	ENSG00000106868.17	ENST00000374270.8:ENST00000374263.7:ENST00000355396.7:ENST00000374264.6	protein_coding	protein_coding	protein_coding	protein_coding	2	38	2	2.38442	2.63536	2.8863	0.0417472	0.0111679	0.161736	0.0877435
chrX	53638267	53638366	7821418	0	-	0.494949	(0.476,0.515]	chrX	798209	36	INTRON	INTRON	HUWE1	ENSG00000086758.16	ENST00000262854.11:ENST00000342160.7:ENST00000612484.4:ENST00000218328.12	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	38	2	2.38442	2.63536	2.8863	0.0417472	0.0111679	0.161736	0.0877435
chr17	66428610	66428710	6663558	0	+	0.45	(0.44,0.476]	chr17	650326	644	INTRON	INTRON	PRKCA	ENSG00000154229.12	ENST00000413366.8:ENST00000578063.5:ENST00000284384.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	69	2	2.39003	2.635325	2.88062	0.0106488	0.001878	0.0915714	0.039073
chr2	151473263	151473363	893874	0	+	0.37	(0.35,0.378]	chr2	99048	30	INTRON	INTRON	RIF1	ENSG00000080345.18	ENST00000453091.6:ENST00000428287.6:ENST00000444746.7:ENST00000243326.9:ENST00000430328.6:ENST00000454583.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	136	2	2.36097	2.63521	2.90945	0.00173328	3.57589e-4	0.0375363	0.0169202
chr10	70168720	70168819	4640877	0	-	0.414141	(0.408,0.44]	chr10	426918	8	INTRON	INTRON	SAR1A	ENSG00000079332.15	ENST00000373242.6:ENST00000373241.9:ENST00000373239.2	protein_coding	protein_coding	protein_coding	protein_coding	7	111	2	2.38647	2.63519	2.88391	0.00234575	3.67575e-4	0.0434875	0.0172202
chr7	103325650	103325748	3594135	0	-	0.377551	(0.35,0.378]	chr7	335513	7	INTRON	INTRON	DNAJC2	ENSG00000105821.15	ENST00000379263.8:ENST00000249270.11:ENST00000475065.5:ENST00000464253.5:ENST00000426036.6:ENST00000454277.5:ENST00000379257.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	41	2	2.1617	2.6351649999999998	3.10863	0.0771502	0.00470896	0.196285	0.0631419
chr19	9674431	9674531	7133498	0	-	0.47	(0.44,0.476]	chr19	718912	4	SS5_PROX	SS5_PROX:INTRON	ZNF562	ENSG00000171466.10	ENST00000453372.7:ENST00000293648.8:ENST00000590155.5:ENST00000585688.5:ENST00000587392.5:ENST00000588653.5:ENST00000589542.1:ENST00000585350.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	69	2	1.65297	2.635075	3.61718	0.0331814	7.37432e-4	0.145918	0.02495
chr9	122326085	122326184	4194727	0	+	0.444444	(0.44,0.476]	chr9	382709	36	UTR3	UTR3:EXON_MRNA	MRRF	ENSG00000148187.18	ENST00000344641.8	protein_coding	protein_coding	protein_coding	protein_coding	5	69	2	1.65297	2.635075	3.61718	0.0331814	7.37432e-4	0.145918	0.02495
chr8	73293342	73293420	3967598	0	-	0.615385	(0.57,1]	chr8	364041	1	SS5_PROX	SS5_PROX:INTRON	RPL7	ENSG00000147604.14	ENST00000352983.7:ENST00000396467.5:ENST00000396466.5:ENST00000396465.5	protein_coding	protein_coding	protein_coding	protein_coding	7	58	2	2.62103	2.6350300000000004	2.64903	9.85026e-4	4.01771e-4	0.0288488	0.0185763
chr9	112716941	112717041	4318301	0	-	0.34	(0.32,0.35]	chr9	397124	4	SS3_PROX	SS3_PROX:INTRON	INIP	ENSG00000148153.14	ENST00000374242.9:ENST00000497712.6:ENST00000374236.5:ENST00000481146.6:ENST00000374234.1:ENST00000476599.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	107	2	2.27097	2.634975	2.99898	0.00347642	0.00148392	0.0540643	0.034977
chr21	37372011	37372111	7406273	0	+	0.39	(0.378,0.408]	chr21	754846	35	INTRON	INTRON	DYRK1A	ENSG00000157540.22	ENST00000646523.1:ENST00000647425.1:ENST00000647188.2:ENST00000647504.1:ENST00000644942.1:ENST00000338785.8:ENST00000643624.1:ENST00000643551.1:ENST00000426672.6	protein_coding	protein_coding	protein_coding	protein_coding	12	190	2	2.60317	2.6348849999999997	2.6666	4.9423e-4	6.90975e-5	0.0206664	0.00688956
chr10	68679804	68679904	4442087	0	+	0.52	(0.515,0.57]	chr10	409558	64	INTRON	INTRON	TET1	ENSG00000138336.9	ENST00000373644.5	protein_coding	protein_coding	protein_coding	protein_coding	3	44	2	2.43783	2.634855	2.83188	0.0108207	0.00916404	0.0920575	0.0812949
chr3	25741646	25741745	1642418	0	-	0.424242	(0.408,0.44]	chr3	168658	8	INTRON	INTRON	NGLY1	ENSG00000151092.18	ENST00000280700.10:ENST00000428257.5:ENST00000675217.1:ENST00000676225.1:ENST00000493324.5:ENST00000396649.7:ENST00000675178.1:ENST00000675680.1:ENST00000308710.9:ENST00000280699.13:ENST00000674841.1:ENST00000675234.1:ENST00000463611.2:ENST00000417874.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	50	2	2.21238	2.634715	3.05705	0.0193525	0.00658331	0.119831	0.0701901
chr6	4808001	4808101	2791178	0	+	0.42	(0.408,0.44]	chr6	263598	308	INTRON	INTRON	CDYL	ENSG00000153046.18	ENST00000328908.9:ENST00000491864.1:ENST00000440139.5:ENST00000483019.1:ENST00000397588.8:ENST00000472453.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	50	2	2.21238	2.634715	3.05705	0.0193525	0.00658331	0.119831	0.0701901
chrX	130092933	130093033	7887416	0	-	0.42	(0.408,0.44]	chrX	803067	110	INTRON	INTRON	ELF4	ENSG00000102034.18	ENST00000308167.10:ENST00000335997.11:ENST00000434609.1	protein_coding	protein_coding	protein_coding	protein_coding	3	50	2	2.21238	2.634715	3.05705	0.0193525	0.00658331	0.119831	0.0701901
chr5	177428289	177428389	2555868	0	+	0.62	(0.57,1]	chr5	244175	10	INTRON	INTRON	GRK6	ENSG00000198055.11	ENST00000502598.5:ENST00000506296.5:ENST00000511244.5:ENST00000355472.10:ENST00000507633.5:ENST00000393576.7:ENST00000528793.5:ENST00000355958.9:ENST00000512684.1	protein_coding	protein_coding	protein_coding	protein_coding	4	33	2	2.23972	2.634695	3.02967	0.00670296	0.00471306	0.0707084	0.0631419
chr5	34185923	34186021	2599944	0	-	0.336735	(0.32,0.35]	chr5	247053	27	INTRON	INTRON	GUSBP18	ENSG00000215158.9	ENST00000514048.5:ENST00000507274.1:ENST00000508395.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	4	71	2	2.4722	2.6346350000000003	2.79707	0.0170923	0.00307237	0.104099	0.0509893
chr1	63414246	63414346	132948	0	+	0.48	(0.476,0.515]	chr1	15096	1	SS5_PROX	SS5_PROX:INTRON	ALG6	ENSG00000088035.18	ENST00000647818.1:ENST00000603108.6:ENST00000648964.1:ENST00000263440.6:ENST00000650494.1:ENST00000649570.1:ENST00000465969.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	37	2	2.3223	2.63461	2.94692	0.0519312	0.00794331	0.159306	0.0797304
chr1	71045580	71045680	482817	0	-	0.48	(0.476,0.515]	chr1	57831	327	INTRON	INTRON	PTGER3	ENSG00000050628.21	ENST00000628037.2:ENST00000370931.7:ENST00000361210.6:ENST00000479353.5:ENST00000497146.5:ENST00000460330.5:ENST00000356595.8:ENST00000306666.10:ENST00000370924.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	37	2	2.3223	2.63461	2.94692	0.0519312	0.00794331	0.159306	0.0797304
chr1	226183790	226183890	647029	0	-	0.49	(0.476,0.515]	chr1	76667	174	INTRON	INTRON	ACBD3	ENSG00000182827.9	ENST00000366812.6	protein_coding	protein_coding	protein_coding	protein_coding	2	37	2	2.3223	2.63461	2.94692	0.0519312	0.00794331	0.159306	0.0797304
chr14	61079227	61079327	5740096	0	+	0.48	(0.476,0.515]	chr14	545058	3	SS5_PROX	SS5_PROX:INTRON	SLC38A6	ENSG00000139974.16	ENST00000354886.6:ENST00000525723.6:ENST00000491344.7:ENST00000451406.5:ENST00000529345.6:ENST00000526539.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	37	2	2.3223	2.63461	2.94692	0.0519312	0.00794331	0.159306	0.0797304
chr16	2262077	2262177	6431632	0	-	0.51	(0.476,0.515]	chr16	618788	4	SS5_PROX	SS5_PROX:INTRON	RNPS1	ENSG00000205937.12	ENST00000397086.6:ENST00000566458.5:ENST00000320225.10:ENST00000566397.5:ENST00000565678.5:ENST00000561718.5:ENST00000568631.5:ENST00000569598.6:ENST00000301730.12:ENST00000567147.5:ENST00000565870.5:ENST00000561518.5:ENST00000564311.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	37	2	2.3223	2.63461	2.94692	0.0519312	0.00794331	0.159306	0.0797304
chr4	78852546	78852645	1982155	0	+	0.30303	(0.28,0.32]	chr4	198504	11	INTRON	INTRON	BMP2K	ENSG00000138756.19	ENST00000389010.7:ENST00000502613.3:ENST00000502871.5:ENST00000505725.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	184	2	2.31374	2.6345650000000003	2.95539	7.97152e-4	6.48314e-4	0.0258804	0.0232863
chr17	47622404	47622501	6622541	0	+	0.391753	(0.378,0.408]	chr17	645982	6	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	NPEPPS	ENSG00000141279.17	ENST00000677710.1:ENST00000530173.6:ENST00000677226.1:ENST00000322157.9:ENST00000678461.1:ENST00000677120.1:ENST00000678909.1:ENST00000678496.1:ENST00000678262.1:ENST00000677370.1:ENST00000677664.1:ENST00000676492.1:ENST00000530514.6:ENST00000678902.1:ENST00000528565.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	125	2	2.17649	2.6345349999999996	3.09258	0.00117925	8.09686e-4	0.031662	0.0263656
chr1	223807447	223807546	642986	0	-	0.323232	(0.32,0.35]	chr1	75932	1	INTRON	INTRON	TP53BP2	ENSG00000143514.17	ENST00000343537.12:ENST00000391878.6:ENST00000494100.1:ENST00000496282.5:ENST00000473135.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	62	2	2.30673	2.634525	2.96232	0.0584434	0.00118924	0.167723	0.031662
chr3	32501015	32501115	1649635	0	-	0.51	(0.476,0.515]	chr3	169095	88	INTRON	INTRON	CMTM6	ENSG00000091317.8	ENST00000205636.4:ENST00000495177.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	92	2	2.07116	2.6344849999999997	3.19781	0.00731321	4.3655e-4	0.076234	0.0191798
chr11	33129013	33129113	4940648	0	-	0.31	(0.28,0.32]	chr11	462854	202	INTRON	INTRON	CSTF3	ENSG00000176102.13	ENST00000323959.9:ENST00000524827.6	protein_coding	protein_coding	protein_coding	protein_coding	3	65	2	2.45545	2.634395	2.81334	0.0438092	0.00248627	0.14901	0.0461207
chr6	12031457	12031557	2814418	0	+	0.47	(0.44,0.476]	chr6	264794	107	INTRON	INTRON	HIVEP1	ENSG00000095951.17	ENST00000491710.5:ENST00000487103.5:ENST00000379388.7:ENST00000627968.2:ENST00000541134.5:ENST00000442081.6:ENST00000478545.1:ENST00000484210.1	protein_coding	protein_coding	protein_coding	protein_coding	2	39	2	2.29425	2.63438	2.97451	0.0518406	0.00853825	0.176696	0.0780043
chr7	134648657	134648757	3426357	0	+	0.47	(0.44,0.476]	chr7	319476	10	INTRON	INTRON	BPGM	ENSG00000172331.12	ENST00000418040.5:ENST00000393132.2:ENST00000344924.8	protein_coding	protein_coding	protein_coding	protein_coding	2	39	2	2.29425	2.63438	2.97451	0.0518406	0.00853825	0.176696	0.0780043
chr1	53784761	53784861	460060	0	-	0.5	(0.476,0.515]	chr1	55364	119	INTRON	INTRON	NDC1	ENSG00000058804.12	ENST00000371429.4	protein_coding	protein_coding	protein_coding	protein_coding	4	59	2	2.06898	2.634365	3.19975	0.0137491	0.00383299	0.10247	0.0542786
chr7	112783969	112784064	3624340	0	-	0.347368	(0.32,0.35]	chr7	337164	3	CDS	CDS:EXON_MRNA:SS3_PROX:INTRON	TMEM168	ENSG00000146802.13	ENST00000312814.11:ENST00000454074.5:ENST00000447395.5:ENST00000449743.1:ENST00000441474.1	protein_coding	protein_coding	protein_coding	protein_coding	7	129	2	2.53063	2.63435	2.73807	0.00139315	0.00105397	0.0340865	0.0299229
chr20	47535004	47535103	7281328	0	+	0.313131	(0.28,0.32]	chr20	740469	326	INTRON	INTRON	NCOA3	ENSG00000124151.19	ENST00000371998.8:ENST00000372004.7:ENST00000371997.3	protein_coding	protein_coding	protein_coding	protein_coding	4	75	2	2.14534	2.6343300000000003	3.12332	0.0117054	0.00698537	0.0962115	0.0718189
chr4	126551113	126551213	2236220	0	-	0.32	(0.28,0.32]	chr4	219023	856	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	4	75	2	2.14534	2.6343300000000003	3.12332	0.0117054	0.00698537	0.0962115	0.0718189
chr7	136117188	136117288	3431425	0	+	0.45	(0.44,0.476]	chr7	319909	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ENSG00000232053	ENSG00000232053.7	ENST00000657456.1:ENST00000668062.1:ENST00000668668.1:ENST00000445293.6:ENST00000659747.1:ENST00000668896.1:ENST00000435996.1	lncRNA	lncRNA	lncRNA	lncRNA	6	96	2	2.38636	2.63431	2.88226	0.0047296	3.71378e-4	0.0600445	0.0173619
chr14	103693875	103693961	5828316	0	+	0.593023	(0.57,1]	chr14	553143	4	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	KLC1	ENSG00000126214.22	ENST00000348520.10:ENST00000334553.11:ENST00000555836.5:ENST00000452929.6:ENST00000554280.5:ENST00000557450.5:ENST00000554228.5:ENST00000535194.2:ENST00000538504.6:ENST00000557686.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	28	2	2.53383	2.634285	2.73474	0.02547	0.00241874	0.12011	0.0454275
chr3	25735521	25735618	1642349	0	-	0.371134	(0.35,0.378]	chr3	168636	17	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	NGLY1	ENSG00000151092.18	ENST00000280700.10:ENST00000428257.5:ENST00000675217.1:ENST00000676225.1:ENST00000493324.5:ENST00000396649.7:ENST00000675178.1:ENST00000675680.1:ENST00000308710.9:ENST00000280699.13:ENST00000496726.5:ENST00000674841.1:ENST00000675234.1:ENST00000463611.2:ENST00000417874.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	54	2	2.23043	2.634285	3.03814	0.0187487	0.00767003	0.117523	0.075364
chr1	70228641	70228727	142666	0	+	0.244186	[0,0.28]	chr1	15984	2	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	SRSF11	ENSG00000116754.14	ENST00000370951.5:ENST00000463877.1:ENST00000687381.1:ENST00000370950.7:ENST00000475204.5:ENST00000370949.2:ENST00000395136.7:ENST00000473950.5:ENST00000469170.5:ENST00000486667.5:ENST00000481648.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	12	262	2	2.59025	2.6342600000000003	2.67827	0.001391	1.86471e-4	0.0340552	0.0119106
chr10	17658664	17658764	4399411	0	+	0.52	(0.515,0.57]	chr10	406150	139	INTRON	INTRON	STAM	ENSG00000136738.15	ENST00000377524.8:ENST00000377500.1:ENST00000445846.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	52	2	2.36534	2.634225	2.90311	0.0094233	0.00404547	0.0817766	0.0578376
chr10	96855695	96855795	4503199	0	+	0.51	(0.476,0.515]	chr10	414529	215	INTRON	INTRON	LCOR	ENSG00000196233.14	ENST00000676067.1:ENST00000676257.1:ENST00000676187.1:ENST00000675151.1:ENST00000675687.1:ENST00000675251.1:ENST00000676123.1:ENST00000371103.8:ENST00000675471.1:ENST00000421806.4:ENST00000675902.1:ENST00000540664.6:ENST00000676414.1:ENST00000675537.1:ENST00000675117.1:ENST00000675125.1:ENST00000356016.7:ENST00000371097.8:ENST00000676381.1:ENST00000674796.1:ENST00000674725.1:ENST00000675971.1:ENST00000676373.1:ENST00000676314.1:ENST00000675915.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	37	2	2.56868	2.634175	2.69967	0.0256676	0.0195838	0.133676	0.109483
chr11	586161	586260	4719670	0	+	0.494949	(0.476,0.515]	chr11	436170	37	INTRON	INTRON	PHRF1	ENSG00000070047.13	ENST00000264555.10:ENST00000416188.3:ENST00000534320.5:ENST00000413872.6:ENST00000533464.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	37	2	2.56868	2.634175	2.69967	0.0256676	0.0195838	0.133676	0.109483
chr4	99937485	99937584	2209521	0	-	0.494949	(0.476,0.515]	chr4	216403	65	INTRON	INTRON	DNAJB14	ENSG00000164031.17	ENST00000442697.7:ENST00000334223.6:ENST00000398991.3:ENST00000426476.5:ENST00000474664.5:ENST00000471738.1:ENST00000469942.1:ENST00000610281.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	37	2	2.56868	2.634175	2.69967	0.0256676	0.0195838	0.133676	0.109483
chr5	69206417	69206515	2380276	0	+	0.5	(0.476,0.515]	chr5	229229	31	INTRON	INTRON	CENPH	ENSG00000153044.10	ENST00000515001.5:ENST00000283006.7:ENST00000502689.1	protein_coding	protein_coding	protein_coding	protein_coding	2	37	2	2.56868	2.634175	2.69967	0.0256676	0.0195838	0.133676	0.109483
chr7	76621297	76621388	3341082	0	+	0.494505	(0.476,0.515]	chr7	311179	3	EXON_LNCRNA	EXON_LNCRNA:INTRON	ENSG00000205485	ENSG00000205485.13	ENST00000418663.5:ENST00000450661.1:ENST00000423084.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	2	37	2	2.56868	2.634175	2.69967	0.0256676	0.0195838	0.133676	0.109483
chr9	128827872	128827962	4359254	0	-	0.477778	(0.476,0.515]	chr9	400681	3	INTRON	INTRON	SPOUT1	ENSG00000198917.13	ENST00000361256.10:ENST00000466556.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	37	2	2.56868	2.634175	2.69967	0.0256676	0.0195838	0.133676	0.109483
chr6	99536273	99536373	2917832	0	+	0.45	(0.44,0.476]	chr6	275834	32	INTRON	INTRON	TSTD3	ENSG00000279170.3	ENST00000623858.2:ENST00000607332.2:ENST00000651400.1:ENST00000652704.1	protein_coding	processed_transcript	protein_coding	processed_transcript	5	68	2	1.7965	2.63415	3.4718	0.0205549	0.00136358	0.122348	0.0336321
chr9	111417682	111417782	4314610	0	-	0.41	(0.408,0.44]	chr9	396755	4	SS5_PROX	SS5_PROX:INTRON	ECPAS	ENSG00000136813.15	ENST00000684092.1:ENST00000338205.9:ENST00000259335.8:ENST00000602447.5	protein_coding	protein_coding	protein_coding	protein_coding	5	81	2	2.36228	2.6341400000000004	2.906	0.00528443	0.00131817	0.0635846	0.0333932
chr10	42352708	42352799	4603301	0	-	0.395604	(0.378,0.408]	chr10	424078	4	SS5_PROX	SS5_PROX:INTRON	ENSG00000215146	ENSG00000215146.5	ENST00000609841.1:ENST00000650175.1:ENST00000423987.2:ENST00000609034.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	2	41	2	2.26252	2.6341	3.00568	0.056222	0.00811866	0.18407	0.0766625
chr1	244844461	244844559	672884	0	-	0.5	(0.476,0.515]	chr1	79586	40	UTR3	UTR3:EXON_MRNA:INTRON	HNRNPU	ENSG00000153187.20	ENST00000475997.6:ENST00000366527.4:ENST00000649899.1:ENST00000638230.1:ENST00000640657.1	protein_coding	retained_intron	protein_coding	retained_intron:nonsense_mediated_decay	11	168	2	2.61555	2.634085	2.65262	3.96108e-4	1.21779e-4	0.0185763	0.0094308
chr7	100314021	100314121	3586548	0	-	0.53	(0.515,0.57]	chr7	334330	129	INTRON	INTRON	PMS2P1	ENSG00000078319.11	ENST00000685724.1:ENST00000692351.1:ENST00000685541.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	7	88	2	1.9021	2.6340649999999997	3.36603	0.00848696	1.39454e-4	0.083161	0.0107072
chr22	19960499	19960598	7477592	0	+	0.616162	(0.57,1]	chr22	762571	62	INTRON	INTRON	COMT	ENSG00000093010.15	ENST00000676678.1:ENST00000403184.5:ENST00000361682.11:ENST00000403710.5:ENST00000407537.5:ENST00000467943.5:ENST00000678868.1:ENST00000678769.1:ENST00000428707.2:ENST00000412786.5:ENST00000207636.9:ENST00000406520.7:ENST00000678255.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	92	2	1.93618	2.633955	3.33173	0.00226014	2.89691e-6	0.0437013	0.00119813
chr2	169551061	169551160	1261465	0	-	0.414141	(0.408,0.44]	chr2	133643	40	INTRON	INTRON	FASTKD1	ENSG00000138399.18	ENST00000453153.7:ENST00000453929.6	protein_coding	protein_coding	protein_coding	protein_coding	4	67	2	2.36185	2.633925	2.906	0.0133164	0.00131817	0.094512	0.0333932
chr19	21757945	21758044	7159209	0	-	0.474747	(0.44,0.476]	chr19	723737	40	INTRON	INTRON	ZNF100	ENSG00000197020.12	ENST00000358296.11:ENST00000598026.1:ENST00000596452.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	69	2	1.76195	2.633895	3.50584	0.0252608	8.66138e-4	0.12011	0.0266729
chr12	56676046	56676145	5335958	0	-	0.535354	(0.515,0.57]	chr12	510192	26	INTRON	INTRON	PTGES3	ENSG00000110958.16	ENST00000537473.2:ENST00000614328.4:ENST00000262033.11:ENST00000414274.7:ENST00000436399.6:ENST00000448157.6:ENST00000456859.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	32	2	2.43589	2.6338850000000003	2.83188	0.0370871	0.0108207	0.139194	0.0920575
chr6	104966875	104966975	2929949	0	+	0.52	(0.515,0.57]	chr6	276110	82	INTRON	INTRON	LIN28B	ENSG00000187772.8	ENST00000635857.1:ENST00000637759.1:ENST00000345080.5	protein_coding	protein_coding	protein_coding	protein_coding	2	32	2	2.43589	2.6338850000000003	2.83188	0.0370871	0.0108207	0.139194	0.0920575
chr8	144384716	144384815	3882186	0	+	0.565657	(0.515,0.57]	chr8	356996	11	INTRON	INTRON	ADCK5	ENSG00000173137.12	ENST00000534714.5:ENST00000526231.6:ENST00000533715.2:ENST00000529654.5:ENST00000308860.11:ENST00000532190.2:ENST00000526833.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	32	2	2.43589	2.6338850000000003	2.83188	0.0370871	0.0108207	0.139194	0.0920575
chr11	67120149	67120249	4812453	0	+	0.65	(0.57,1]	chr11	448092	1	SS5_PROX	SS5_PROX:INTRON	KDM2A	ENSG00000173120.15	ENST00000529006.7:ENST00000398645.6:ENST00000532436.5:ENST00000527157.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	48	2	2.12821	2.63382	3.13943	0.00521663	3.01503e-4	0.0633615	0.0155054
chr11	108102697	108102796	4856692	0	+	0.252525	[0,0.28]	chr11	452969	38	INTRON	INTRON	CUL5	ENSG00000166266.14	ENST00000393094.7:ENST00000531427.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	56	2	2.29142	2.6337900000000003	2.97616	0.0592143	0.0128425	0.189982	0.0926667
chr16	23839600	23839700	6323794	0	+	0.54	(0.515,0.57]	chr16	605693	18	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000498058.1:ENST00000645517.1:ENST00000498739.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	104	2	2.50471	2.63375	2.76279	7.25448e-4	4.33065e-4	0.0247646	0.0186938
chr2	20328270	20328368	1076559	0	-	0.44898	(0.44,0.476]	chr2	115035	5	INTRON	INTRON	PUM2	ENSG00000055917.16	ENST00000361078.7:ENST00000442400.5:ENST00000420234.5:ENST00000429419.6:ENST00000432105.5:ENST00000446940.5:ENST00000424110.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	82	2	2.38519	2.633725	2.88226	0.012193	3.71378e-4	0.0910127	0.0173619
chr1	32116231	32116331	63535	0	+	0.55	(0.515,0.57]	chr1	8071	77	INTRON	INTRON	KPNA6	ENSG00000025800.14	ENST00000373625.8:ENST00000471599.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	32	2	2.60899	2.6336649999999997	2.65834	0.0232669	0.0187418	0.118148	0.117523
chr11	14477215	14477315	4918093	0	-	0.56	(0.515,0.57]	chr11	460912	2	SS3_PROX	SS3_PROX:INTRON	COPB1	ENSG00000129083.13	ENST00000249923.7:ENST00000439561.7:ENST00000534234.5	protein_coding	protein_coding	protein_coding	protein_coding	2	32	2	2.60899	2.6336649999999997	2.65834	0.0232669	0.0187418	0.118148	0.117523
chr2	176286781	176286881	925386	0	+	0.54	(0.515,0.57]	chr2	101669	160	INTRON	INTRON	MTX2	ENSG00000128654.14	ENST00000420864.5:ENST00000249442.11:ENST00000423461.6:ENST00000443241.5:ENST00000452865.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	32	2	2.60899	2.6336649999999997	2.65834	0.0232669	0.0187418	0.118148	0.117523
chr8	43057128	43057217	3745854	0	+	0.516854	(0.515,0.57]	chr8	348512	7	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	FNTA	ENSG00000168522.13	ENST00000533559.5:ENST00000526755.5:ENST00000302279.8:ENST00000527153.5:ENST00000533383.5:ENST00000533998.5:ENST00000524546.5:ENST00000531266.5:ENST00000533368.1:ENST00000525699.5:ENST00000529687.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	32	2	2.60899	2.6336649999999997	2.65834	0.0232669	0.0187418	0.118148	0.117523
chr3	48694148	48694240	1689463	0	-	0.586957	(0.57,1]	chr3	172836	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:INTRON	IP6K2	ENSG00000068745.15	ENST00000328631.10:ENST00000479914.5:ENST00000449563.5:ENST00000413654.5:ENST00000443853.5:ENST00000437427.5:ENST00000412850.5:ENST00000454335.5:ENST00000340879.8:ENST00000432678.6:ENST00000433104.2:ENST00000416707.1:ENST00000431721.6:ENST00000449610.5:ENST00000413298.5:ENST00000450045.5:ENST00000446860.5:ENST00000455545.5:ENST00000412795.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	100	2	2.54036	2.6335550000000003	2.72675	8.47159e-5	4.4133e-5	0.00823834	0.00538971
chr17	30121368	30121468	6587434	0	+	0.37	(0.35,0.378]	chr17	640557	28	INTRON	INTRON	NSRP1	ENSG00000126653.18	ENST00000540900.7:ENST00000584423.5:ENST00000612959.4:ENST00000247026.10:ENST00000577289.6:ENST00000584154.5:ENST00000394826.8:ENST00000479218.6:ENST00000475652.5:ENST00000584317.5:ENST00000583301.5:ENST00000585881.5:ENST00000467446.6:ENST00000580103.6:ENST00000581048.5:ENST00000588614.1:ENST00000589608.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	40	2	2.47065	2.63354	2.79643	0.0386172	0.013543	0.142656	0.101363
chr3	133588739	133588834	1509650	0	+	0.421053	(0.408,0.44]	chr3	157894	5	UTR3	UTR3:EXON_MRNA	CDV3	ENSG00000091527.17	ENST00000688838.1:ENST00000264993.8:ENST00000420115.6:ENST00000515421.1	protein_coding	protein_coding	protein_coding	protein_coding	14	185	2	1.89114	2.6335100000000002	3.37588	0.0026692	2.08728e-5	0.0463735	0.00353198
chr5	87393790	87393883	2668723	0	-	0.311828	(0.28,0.32]	chr5	252560	5	UTR3	UTR3:EXON_MRNA:INTRON	CCNH	ENSG00000134480.16	ENST00000645953.1:ENST00000646883.1:ENST00000505587.5:ENST00000510921.5:ENST00000508855.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	141	2	2.33674	2.6334999999999997	2.93026	0.00413289	4.1414e-4	0.0566868	0.0181789
chr7	100816891	100816991	3587709	0	-	0.6	(0.57,1]	chr7	334694	3	SS5_PROX	SS5_PROX:INTRON	EPHB4	ENSG00000196411.10	ENST00000358173.8:ENST00000616502.4:ENST00000360620.7:ENST00000487222.5:ENST00000477446.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	27	2	2.13445	2.633495	3.13254	0.0241482	0.00310655	0.12011	0.0512344
chr1	223829166	223829266	643211	0	-	0.47	(0.44,0.476]	chr1	75964	32	INTRON	INTRON	TP53BP2	ENSG00000143514.17	ENST00000343537.12:ENST00000391878.6:ENST00000465119.1:ENST00000472180.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	61	2	2.46422	2.6334850000000003	2.80275	0.0146513	0.00282908	0.0982604	0.0491595
chr15	92986670	92986769	6104592	0	+	0.343434	(0.32,0.35]	chr15	581558	6	INTRON	INTRON	CHD2	ENSG00000173575.22	ENST00000626874.2:ENST00000394196.9:ENST00000635856.1:ENST00000637572.1:ENST00000636881.1:ENST00000636306.1:ENST00000637789.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	69	2	2.06478	2.63347	3.20216	0.0147778	0.00480708	0.106702	0.0602209
chr16	88783202	88783302	6540202	0	-	0.58	(0.57,1]	chr16	633998	334	INTRON	INTRON	PIEZO1	ENSG00000103335.22	ENST00000301015.14	protein_coding	protein_coding	protein_coding	protein_coding	3	28	2	1.91937	2.6334400000000002	3.34751	0.0468438	0.00122677	0.167716	0.0320791
chr11	108295433	108295527	4857844	0	+	0.404255	(0.378,0.408]	chr11	453229	5	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	ATM	ENSG00000149311.20	ENST00000675843.1:ENST00000683174.1:ENST00000527805.6:ENST00000675595.1:ENST00000452508.6:ENST00000278616.9:ENST00000524792.5:ENST00000531525.2:ENST00000683524.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	83	2	2.63057	2.6334299999999997	2.63629	0.0053733	0.001315	0.0642754	0.0333932
chr7	12401362	12401461	3485416	0	-	0.292929	(0.28,0.32]	chr7	325970	72	INTRON	INTRON	VWDE	ENSG00000146530.15	ENST00000275358.8:ENST00000452576.6:ENST00000521169.5:ENST00000326715.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	117	2	1.97026	2.633415	3.29657	0.0154633	2.79563e-4	0.100909	0.0148832
chr1	30950026	30950126	411715	0	-	0.35	(0.32,0.35]	chr1	49635	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	PUM1	ENSG00000134644.16	ENST00000426105.7:ENST00000373747.7:ENST00000257075.9:ENST00000424085.6:ENST00000525843.5:ENST00000440538.6:ENST00000498419.5:ENST00000373741.8:ENST00000373742.6:ENST00000529846.5:ENST00000525997.1:ENST00000527498.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	90	2	2.10434	2.633355	3.16237	0.00550276	0.00423324	0.0648867	0.0595557
chr5	10400783	10400842	2318130	0	+	0.40678	(0.378,0.408]	chr5	224671	1	CDS	CDS:EXON_MRNA	MARCHF6	ENSG00000145495.16	ENST00000274140.10:ENST00000449913.6:ENST00000511802.5:ENST00000503788.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	17	268	2	2.4593	2.63328	2.80726	6.26191e-4	6.01958e-6	0.0230124	0.0017156
chr18	32101172	32101271	6887352	0	+	0.40404	(0.378,0.408]	chr18	682655	79	INTRON	INTRON	RNF138	ENSG00000134758.14	ENST00000261593.8:ENST00000585103.5:ENST00000578914.1:ENST00000580519.1:ENST00000578107.5:ENST00000583733.1:ENST00000257190.9:ENST00000580499.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	52	2	2.21238	2.633155	3.05393	0.0218124	0.00551532	0.11491	0.0672816
chr1	1570194	1570293	360276	0	-	0.474747	(0.44,0.476]	chr1	41853	49	INTRON	INTRON	SSU72	ENSG00000160075.12	ENST00000291386.4:ENST00000378725.3:ENST00000359060.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	70	2	1.54868	2.6330150000000003	3.71735	0.0457575	4.72844e-4	0.164677	0.0201458
chr1	93179353	93179453	508548	0	-	0.29	(0.28,0.32]	chr1	59928	163	INTRON	INTRON	TMED5	ENSG00000117500.13	ENST00000370282.8:ENST00000370290.7:ENST00000479918.5:ENST00000370280.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	47	2	2.53522	2.632995	2.73077	0.0310424	0.0220748	0.143457	0.115395
chr15	90993507	90993606	6259654	0	-	0.313131	(0.28,0.32]	chr15	597349	71	INTRON	INTRON	PRC1:ENSG00000284946	ENSG00000198901.14:ENSG00000284946.1	ENST00000394249.8:ENST00000361188.9:ENST00000643536.1:ENST00000442656.6:ENST00000647331.1:ENST00000553494.5:ENST00000557763.5:ENST00000417173.6:ENST00000560605.1:ENST00000557905.5:ENST00000555791.5:ENST00000555745.5:ENST00000559811.1:ENST00000556129.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	47	2	2.53522	2.632995	2.73077	0.0310424	0.0220748	0.143457	0.115395
chr7	64551694	64551793	3537207	0	-	0.393939	(0.378,0.408]	chr7	329913	69	INTRON	INTRON	ZNF680	ENSG00000173041.12	ENST00000309683.11:ENST00000476563.1:ENST00000447137.2:ENST00000473601.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	64	2	2.53602	2.632975	2.72993	0.0188736	0.0020933	0.108861	0.0424943
chr19	38929558	38929658	7181404	0	-	0.4	(0.378,0.408]	chr19	726105	1	SS5_PROX	SS5_PROX:INTRON	SARS2	ENSG00000104835.15	ENST00000221431.11:ENST00000594171.5:ENST00000430193.7:ENST00000600042.5:ENST00000455102.6:ENST00000598343.5:ENST00000598598.5:ENST00000593754.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	40	2	2.36428	2.63295	2.90162	0.0441088	0.0113157	0.162255	0.0886121
chr20	61996750	61996850	7360202	0	-	0.39	(0.378,0.408]	chr20	750632	155	INTRON	INTRON	TAF4	ENSG00000130699.20	ENST00000474089.5:ENST00000692470.1:ENST00000252996.9:ENST00000436129.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	40	2	2.36428	2.63295	2.90162	0.0441088	0.0113157	0.162255	0.0886121
chrX	118507361	118507461	7708287	0	+	0.48	(0.476,0.515]	chrX	788656	109	INTRON	INTRON	DOCK11	ENSG00000147251.16	ENST00000276202.9:ENST00000276204.10	protein_coding	protein_coding	protein_coding	protein_coding	4	59	2	2.16306	2.6328500000000004	3.10264	0.00973468	0.00543163	0.0877284	0.0645052
chr17	66315616	66315716	6662427	0	+	0.5	(0.476,0.515]	chr17	650320	91	INTRON	INTRON	PRKCA	ENSG00000154229.12	ENST00000413366.8:ENST00000578063.5:ENST00000583361.1:ENST00000284384.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	50	2	2.63168	2.6328199999999997	2.63396	0.0237106	0.00426634	0.118716	0.0596808
chr1	176093773	176093873	590568	0	-	0.45	(0.44,0.476]	chr1	70920	75	INTRON	INTRON	COP1	ENSG00000143207.21	ENST00000367669.8:ENST00000367667.5:ENST00000367666.5:ENST00000649803.1:ENST00000308769.12:ENST00000459744.5:ENST00000498306.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	50	2	2.24189	2.632775	3.02366	0.0193405	0.00603307	0.108861	0.0700813
chr19	46359766	46359866	7081442	0	+	0.45	(0.44,0.476]	chr19	708528	54	INTRON	INTRON	PPP5C	ENSG00000011485.15	ENST00000012443.9:ENST00000478046.5:ENST00000391919.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	50	2	2.24189	2.632775	3.02366	0.0193405	0.00603307	0.108861	0.0700813
chr1	39879986	39880085	428238	0	-	0.515152	(0.476,0.515]	chr1	52034	35	INTRON	INTRON	TRIT1	ENSG00000043514.17	ENST00000316891.10:ENST00000648678.1:ENST00000537440.5:ENST00000372818.5:ENST00000462797.5:ENST00000441669.6:ENST00000495175.6:ENST00000491865.5:ENST00000541099.5:ENST00000492612.6:ENST00000489945.5:ENST00000486825.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	59	2	2.01953	2.632745	3.24596	0.0163662	0.00322919	0.109586	0.0507087
chr16	56361742	56361839	6490624	0	-	0.257732	[0,0.28]	chr16	627651	4	UTR3	UTR3:EXON_MRNA	AMFR	ENSG00000159461.15	ENST00000290649.10:ENST00000492830.5	protein_coding	protein_coding	protein_coding	protein_coding	7	150	2	2.42659	2.63272	2.83885	0.00399044	0.00134603	0.0550443	0.033786
chr4	126477038	126477138	2235479	0	-	0.37	(0.35,0.378]	chr4	219023	115	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	5	89	2	2.4077	2.63267	2.85764	0.0122026	4.6759e-4	0.0910127	0.0195867
chr20	32386731	32386831	7256110	0	+	0.34	(0.32,0.35]	chr20	737076	143	INTRON	INTRON	ASXL1	ENSG00000171456.21	ENST00000651418.1:ENST00000375687.10:ENST00000613218.4:ENST00000644587.1:ENST00000620121.4:ENST00000646985.1:ENST00000643168.1:ENST00000306058.9:ENST00000645688.1:ENST00000470145.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	109	2	2.59855	2.632575	2.6666	0.00682041	5.34642e-4	0.0712518	0.0209063
chr6	13647109	13647208	3058574	0	-	0.282828	(0.28,0.32]	chr6	284524	20	INTRON	INTRON	RANBP9	ENSG00000010017.13	ENST00000011619.6	protein_coding	protein_coding	protein_coding	protein_coding	5	86	2	1.83325	2.632415	3.43158	0.0199548	0.00244075	0.120668	0.0445752
chr18	8914375	8914475	6868531	0	+	0.48	(0.476,0.515]	chr18	680485	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ENSG00000287719	ENSG00000287719.1	ENST00000667345.1	lncRNA	lncRNA	lncRNA	lncRNA	7	109	2	2.28812	2.632375	2.97663	0.00344676	2.26055e-4	0.0517761	0.0132815
chr1	202524967	202525067	294554	0	+	0.51	(0.476,0.515]	chr1	33886	222	INTRON	INTRON	PPP1R12B	ENSG00000077157.22	ENST00000391959.5:ENST00000608999.6:ENST00000290419.9:ENST00000491336.5:ENST00000466273.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	50	2	2.06491	2.6323299999999996	3.19975	0.0304733	0.00383299	0.143385	0.0542786
chr2	111484839	111484939	1211709	0	-	0.48	(0.476,0.515]	chr2	128939	44	INTRON	INTRON	MIR4435-2HG	ENSG00000172965.17	ENST00000645030.2:ENST00000642191.1:ENST00000673798.1:ENST00000645051.2:ENST00000673649.1:ENST00000669658.1:ENST00000669917.1:ENST00000661559.1:ENST00000653687.1:ENST00000667670.1:ENST00000609220.2:ENST00000656760.1:ENST00000609902.6:ENST00000666683.1:ENST00000674070.1:ENST00000662335.1:ENST00000664422.1:ENST00000673775.1:ENST00000674092.1:ENST00000673958.1:ENST00000658936.1:ENST00000662635.1:ENST00000666204.1:ENST00000659458.1:ENST00000664443.1:ENST00000670295.1:ENST00000661655.1:ENST00000666390.1:ENST00000659079.1:ENST00000660442.1:ENST00000664009.1:ENST00000439362.6:ENST00000654473.1:ENST00000664999.1:ENST00000673728.1:ENST00000659791.1:ENST00000666144.1:ENST00000659933.1:ENST00000670715.1:ENST00000653568.1:ENST00000643013.1:ENST00000673866.1:ENST00000443467.6:ENST00000669875.1:ENST00000673653.1:ENST00000673988.1:ENST00000661945.1:ENST00000669515.1:ENST00000431385.6:ENST00000656416.1:ENST00000674037.1:ENST00000432818.5:ENST00000674013.1:ENST00000444301.5:ENST00000673964.1:ENST00000673845.1:ENST00000673756.1:ENST00000673960.1:ENST00000673804.1:ENST00000673632.1:ENST00000453478.2:ENST00000673937.1:ENST00000673654.1:ENST00000409569.2:ENST00000674087.1:ENST00000419736.5:ENST00000673840.1:ENST00000674045.1:ENST00000643766.1:ENST00000308604.5:ENST00000604981.5:ENST00000673894.1:ENST00000441075.1:ENST00000673878.1	lncRNA	lncRNA	lncRNA	lncRNA	3	50	2	2.06491	2.6323299999999996	3.19975	0.0304733	0.00383299	0.143385	0.0542786
chr9	105712046	105712146	4182717	0	+	0.49	(0.476,0.515]	chr9	381501	59	INTRON	INTRON	TMEM38B	ENSG00000095209.12	ENST00000374692.8:ENST00000374688.5:ENST00000435034.5	protein_coding	protein_coding	protein_coding	protein_coding	3	50	2	2.06491	2.6323299999999996	3.19975	0.0304733	0.00383299	0.143385	0.0542786
chr18	31928966	31929064	6961257	0	-	0.479592	(0.476,0.515]	chr18	688784	20	INTRON	INTRON	TRAPPC8	ENSG00000153339.15	ENST00000283351.10:ENST00000580104.5:ENST00000582539.5:ENST00000582513.5:ENST00000578658.1:ENST00000584876.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	51	2	1.72558	2.632265	3.53895	0.0767648	0.00075485700000000005	0.196164	0.0251966
chr6	119199858	119199957	3204312	0	-	0.424242	(0.408,0.44]	chr6	298290	56	INTRON	INTRON	MAN1A1	ENSG00000111885.7	ENST00000368468.4	protein_coding	protein_coding	protein_coding	protein_coding	8	114	2	2.01063	2.63223	3.2538299999999998	0.00478395	2.37059e-4	0.0602209	0.0136195
chr7	155768535	155768634	3453158	0	+	0.343434	(0.32,0.35]	chr7	322745	15	INTRON	INTRON	RBM33	ENSG00000184863.11	ENST00000401878.8:ENST00000341148.7:ENST00000392755.2	protein_coding	protein_coding	protein_coding	protein_coding	5	96	2	2.51487	2.632085	2.7493	0.00349334	0.00296357	0.0523105	0.0500135
chr3	47422041	47422141	1682300	0	-	0.58	(0.57,1]	chr3	171821	2	SS5_PROX	SS5_PROX:INTRON	SCAP	ENSG00000114650.21	ENST00000265565.10:ENST00000441517.6:ENST00000320017.10:ENST00000648151.1:ENST00000416208.5:ENST00000468965.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	27	2	2.47993	2.63201	2.78409	0.0116033	0.007207	0.0889104	0.0756278
chr12	121580133	121580214	5439224	0	-	0.358025	(0.35,0.378]	chr12	520091	2	UTR5	UTR5:EXON_MRNA:INTRON	KDM2B	ENSG00000089094.20	ENST00000377071.9:ENST00000377069.8:ENST00000611216.4:ENST00000543025.5:ENST00000538046.6:ENST00000539394.5:ENST00000540191.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	40	2	2.39939	2.63195	2.86451	0.0458078	0.0109111	0.149888	0.0923273
chr2	9512323	9512422	1064035	0	-	0.353535	(0.35,0.378]	chr2	113488	18	INTRON	INTRON	ADAM17	ENSG00000151694.14	ENST00000310823.8:ENST00000648548.1:ENST00000649227.1:ENST00000648857.1:ENST00000647979.1:ENST00000647610.1:ENST00000650116.1:ENST00000649686.1:ENST00000647622.1:ENST00000649972.1:ENST00000650241.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	40	2	2.39939	2.63195	2.86451	0.0458078	0.0109111	0.149888	0.0923273
chr4	67500108	67500208	2153048	0	-	0.37	(0.35,0.378]	chr4	211942	45	INTRON	INTRON	CENPC	ENSG00000145241.11	ENST00000273853.11:ENST00000513216.5:ENST00000506882.5:ENST00000510189.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	40	2	2.39939	2.63195	2.86451	0.0458078	0.0109111	0.149888	0.0923273
chrY	11198270	11198369	7929995	0	-	0.353535	(0.35,0.378]	chrY	807176	348	INTRON	INTRON	ENSG00000278212	ENSG00000278212.3	ENST00000652671.1:ENST00000651211.2:ENST00000687423.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	2	40	2	2.39939	2.63195	2.86451	0.0458078	0.0109111	0.149888	0.0923273
chr22	20094895	20094995	7478385	0	+	0.42	(0.408,0.44]	chr22	762740	1	SS5_PROX	SS5_PROX:INTRON	DGCR8	ENSG00000128191.16	ENST00000383024.6:ENST00000351989.8:ENST00000495826.5:ENST00000407755.1:ENST00000498171.5:ENST00000491892.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	50	2	2.05947	2.63192	3.20437	0.0333232	0.00306596	0.134145	0.0509893
chr5	66168365	66168464	2372740	0	+	0.515152	(0.476,0.515]	chr5	228682	36	EXON_MRNA	EXON_MRNA:INTRON	SREK1	ENSG00000153914.16	ENST00000334121.11:ENST00000520953.5:ENST00000522912.5:ENST00000524111.5:ENST00000380918.7:ENST00000284041.7:ENST00000520580.5:ENST00000519259.5:ENST00000523655.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	15	227	2	2.48491	2.6319150000000002	2.77892	3.08236e-4	2.01419e-5	0.0161584	0.00348025
chr2	176277503	176277603	925293	0	+	0.49	(0.476,0.515]	chr2	101669	67	INTRON	INTRON	MTX2	ENSG00000128654.14	ENST00000420864.5:ENST00000249442.11:ENST00000423461.6:ENST00000443241.5:ENST00000452865.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	49	2	2.37731	2.631805	2.8863	0.0111793	0.0111679	0.0937192	0.0877435
chr19	23815997	23816097	7042969	0	+	0.36	(0.35,0.378]	chr19	702238	66	INTRON	INTRON	RPSAP58	ENSG00000288920.1	ENST00000471224.5:ENST00000692590.1:ENST00000475499.2:ENST00000686829.1:ENST00000689525.1:ENST00000691397.1:ENST00000687994.1:ENST00000484897.4:ENST00000685490.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	40	2	2.53856	2.63177	2.72498	0.0326077	0.0168499	0.133687	0.11068
chr15	29808173	29808273	6125278	0	-	0.51	(0.476,0.515]	chr15	583580	71	INTRON	INTRON	TJP1	ENSG00000104067.17	ENST00000346128.10:ENST00000614355.5:ENST00000400011.6:ENST00000356107.11:ENST00000677774.1:ENST00000545208.6:ENST00000495972.6:ENST00000473741.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	49	2	2.32001	2.631755	2.9435	0.0136217	0.00929849	0.101682	0.0817766
chr11	77819237	77819335	4995964	0	-	0.397959	(0.378,0.408]	chr11	472052	52	INTRON	INTRON	RSF1	ENSG00000048649.14	ENST00000308488.11:ENST00000528095.5:ENST00000440064.2:ENST00000467567.1:ENST00000530604.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	117	2	2.36828	2.63173	2.89518	0.00190046	6.41373e-4	0.0393643	0.0228924
chr13	95191838	95191938	5638771	0	-	0.64	(0.57,1]	chr13	537121	29	INTRON	INTRON	ABCC4	ENSG00000125257.16	ENST00000645237.2:ENST00000643051.1:ENST00000643842.1:ENST00000646439.1:ENST00000643816.1:ENST00000536256.3:ENST00000643556.1:ENST00000629385.1:ENST00000642524.1:ENST00000645532.1:ENST00000644471.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	27	2	2.17026	2.6316949999999997	3.09313	0.0220522	0.00369015	0.123836	0.0535094
chr16	28391404	28391481	6468598	0	-	0.584416	(0.57,1]	chr16	624652	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	EIF3CL	ENSG00000205609.13	ENST00000398944.7:ENST00000380876.5	protein_coding	protein_coding	protein_coding	protein_coding	3	27	2	2.17026	2.6316949999999997	3.09313	0.0220522	0.00369015	0.123836	0.0535094
chr19	28468883	28468983	7165783	0	-	0.65	(0.57,1]	chr19	724189	6	INTRON	INTRON	ENSG00000283403:ENSG00000267243	ENSG00000283403.1:ENSG00000267243.6	ENST00000592347.5:ENST00000593065.5	lncRNA	lncRNA	lncRNA	lncRNA	3	27	2	2.17026	2.6316949999999997	3.09313	0.0220522	0.00369015	0.123836	0.0535094
chr14	103680143	103680242	5828169	0	+	0.535354	(0.515,0.57]	chr14	553120	2	INTRON	INTRON	KLC1	ENSG00000126214.22	ENST00000348520.10:ENST00000380038.7:ENST00000334553.11:ENST00000389744.8:ENST00000555836.5:ENST00000347839.10:ENST00000553286.5:ENST00000557575.5:ENST00000452929.6:ENST00000554280.5:ENST00000557450.5:ENST00000554228.5:ENST00000634686.1:ENST00000246489.11:ENST00000445352.8:ENST00000537046.6:ENST00000553325.5:ENST00000555856.1:ENST00000535194.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	104	2	2.10989	2.6316550000000003	3.15342	0.00378898	6.53448e-5	0.0542459	0.00669181
chr17	81609909	81610009	6849330	0	-	0.49	(0.476,0.515]	chr17	678210	3	SS5_PROX	SS5_PROX:INTRON	NPLOC4	ENSG00000182446.14	ENST00000331134.11:ENST00000374747.9:ENST00000574897.5:ENST00000570324.1:ENST00000574344.5:ENST00000625705.1:ENST00000570300.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	51	2	2.45598	2.631635	2.80729	0.0126008	0.00945755	0.0980703	0.0817766
chr9	131191161	131191252	4216305	0	+	0.571429	(0.57,1]	chr9	386647	3	INTRON	INTRON	NUP214	ENSG00000126883.19	ENST00000695497.1:ENST00000695498.1:ENST00000695496.1:ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000525980.5:ENST00000526346.5:ENST00000531929.5:ENST00000651334.1:ENST00000524578.6:ENST00000453861.6:ENST00000470765.5:ENST00000483497.6:ENST00000465486.6:ENST00000531600.1:ENST00000528114.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	53	2	2.10552	2.631635	3.15775	0.00330145	2.72513e-4	0.0527031	0.0151392
chr22	19503189	19503288	7477075	0	+	0.40404	(0.378,0.408]	chr22	762436	37	INTRON	INTRON	CDC45	ENSG00000093009.11	ENST00000407835.6:ENST00000437685.6:ENST00000438587.6:ENST00000672837.1:ENST00000263201.7:ENST00000404724.7:ENST00000428937.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	129	2	2.19294	2.631565	3.07019	0.00254418	2.29676e-4	0.0465115	0.0139078
chr12	93439446	93439546	5388214	0	-	0.4	(0.378,0.408]	chr12	513727	147	INTRON	INTRON	UBE2N	ENSG00000177889.10	ENST00000318066.7:ENST00000550657.1:ENST00000549833.1:ENST00000549490.1:ENST00000552442.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	56	2	2.63057	2.63152	2.63247	0.0215745	0.0053733	0.123836	0.0642754
chr5	36876403	36876502	2601885	0	-	0.686869	(0.57,1]	chr5	247327	52	EXON_LNCRNA	EXON_LNCRNA	NIPBL-DT	ENSG00000285967.1	ENST00000647750.1:ENST00000649921.1	lncRNA	lncRNA	lncRNA	lncRNA	15	97	2	1.56323	2.6314849999999996	3.69974	0.00662525	7.94667e-7	0.0738715	5.43864e-4
chr10	72782367	72782467	4451000	0	+	0.55	(0.515,0.57]	chr10	410768	213	INTRON	INTRON	MCU	ENSG00000156026.15	ENST00000373053.8:ENST00000357157.10:ENST00000604679.5:ENST00000604372.5:ENST00000603649.5:ENST00000605597.5:ENST00000536019.5:ENST00000604152.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	34	2	2.23241	2.6313899999999997	3.03037	0.0581268	0.00608732	0.188651	0.0676501
chr2	167861514	167861614	1258415	0	-	0.35	(0.32,0.35]	chr2	133322	459	INTRON	INTRON	B3GALT1-AS1	ENSG00000235335.3	ENST00000430546.2:ENST00000657553.1:ENST00000670221.1:ENST00000436982.2	lncRNA	lncRNA	lncRNA	lncRNA	4	70	2	1.64769	2.63138	3.61507	0.0578603	6.48785e-4	0.167723	0.0230814
chr20	34419665	34419763	7259684	0	+	0.581633	(0.57,1]	chr20	737453	10	EXON_LNCRNA	EXON_LNCRNA:INTRON	ITCH	ENSG00000078747.16	ENST00000374864.10:ENST00000535650.7:ENST00000670516.1:ENST00000658310.1:ENST00000665484.1:ENST00000664852.1:ENST00000660337.1:ENST00000665428.1:ENST00000262650.10:ENST00000662871.1:ENST00000665346.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	32	2	2.07956	2.63128	3.183	0.013114	0.00254356	0.0998629	0.0448135
chr3	177083997	177084095	1871300	0	-	0.571429	(0.57,1]	chr3	187380	37	INTRON	INTRON	TBL1XR1	ENSG00000177565.18	ENST00000457928.7:ENST00000430069.5:ENST00000673974.1:ENST00000631253.2:ENST00000352800.10:ENST00000422442.6:ENST00000428970.5:ENST00000424913.5:ENST00000437738.5:ENST00000431421.5:ENST00000635794.1:ENST00000630796.2:ENST00000450267.5:ENST00000630833.2:ENST00000431674.5:ENST00000422066.5:ENST00000443315.5:ENST00000627825.2:ENST00000427349.5:ENST00000413084.5:ENST00000637137.1:ENST00000491623.2:ENST00000637544.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	57	2	2.39556	2.63126	2.86696	0.00141347	2.88184e-4	0.0340865	0.0150627
chr1	22055608	22055705	42230	0	+	0.505155	(0.476,0.515]	chr1	5069	7	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	ENSG00000289694:CDC42	ENSG00000289694.1:ENSG00000070831.18	ENST00000695855.1:ENST00000695856.1:ENST00000344548.8:ENST00000400259.5:ENST00000667384.2:ENST00000411827.2:ENST00000695858.1:ENST00000695857.1:ENST00000315554.14:ENST00000695859.1:ENST00000498236.1:ENST00000656825.1:ENST00000651171.1:ENST00000652582.1:ENST00000695860.1:ENST00000695796.1:ENST00000695797.1:ENST00000662562.2:ENST00000695798.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	60	2	2.01618	2.63124	3.2463	0.0180082	0.00262374	0.106756	0.0470772
chr10	101004860	101004957	4509713	0	+	0.505155	(0.476,0.515]	chr10	415355	3	INTRON	INTRON	LZTS2	ENSG00000107816.17	ENST00000370223.7:ENST00000370220.1:ENST00000454422.2	protein_coding	protein_coding	protein_coding	protein_coding	4	60	2	2.01618	2.63124	3.2463	0.0180082	0.00262374	0.106756	0.0470772
chr7	12355432	12355521	3484929	0	-	0.292135	(0.28,0.32]	chr7	325868	6	INTRON	INTRON	VWDE	ENSG00000146530.15	ENST00000275358.8:ENST00000452576.6:ENST00000521169.5:ENST00000644150.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	160	2	2.15291	2.631145	3.10938	0.00374651	3.22415e-4	0.0562379	0.0165891
chr8	52674674	52674774	3950702	0	-	0.6	(0.57,1]	chr8	362354	4	SS3_PROX	SS3_PROX:INTRON	RB1CC1	ENSG00000023287.13	ENST00000025008.10:ENST00000435644.6:ENST00000521611.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	48	2	1.26112	2.63113	4.00114	0.0533929	3.23665e-5	0.162935	0.00453487
chr5	54053490	54053590	2618340	0	-	0.33	(0.32,0.35]	chr5	248837	53	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	69	2	2.02133	2.6311	3.24087	0.017146	0.00420518	0.111072	0.0572185
chr19	5934823	5934913	7125164	0	-	0.355556	(0.35,0.378]	chr19	717341	5	INTRON	INTRON	RANBP3	ENSG00000031823.14	ENST00000340578.10:ENST00000439268.6:ENST00000592771.5:ENST00000591092.5:ENST00000034275.12:ENST00000587479.2:ENST00000592621.5:ENST00000590623.5:ENST00000591736.5:ENST00000590953.5:ENST00000588879.5:ENST00000587159.5:ENST00000586117.5:ENST00000589353.5:ENST00000587463.5:ENST00000588010.5:ENST00000591124.5:ENST00000585339.5:ENST00000592133.5:ENST00000591881.5:ENST00000589886.5:ENST00000587263.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	66	2	1.56287	2.631075	3.69928	0.0697648	3.94786e-4	0.184298	0.0178567
chr7	123727220	123727320	3632443	0	-	0.36	(0.35,0.378]	chr7	337581	176	INTRON	INTRON	WASL	ENSG00000106299.8	ENST00000223023.5	protein_coding	protein_coding	protein_coding	protein_coding	4	66	2	1.56287	2.631075	3.69928	0.0697648	3.94786e-4	0.184298	0.0178567
chr10	125096298	125096397	4713693	0	-	0.333333	(0.32,0.35]	chr10	434903	76	INTRON	INTRON	CTBP2	ENSG00000175029.17	ENST00000337195.9:ENST00000411419.6:ENST00000494626.6:ENST00000531469.5:ENST00000460976.5:ENST00000476817.1:ENST00000530884.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	168	2	2.1765	2.631035	3.08557	0.00138523	2.85124e-4	0.0341261	0.0154954
chr5	75373843	75373942	2642522	0	-	0.262626	[0,0.28]	chr5	251219	55	UTR3	UTR3:EXON_MRNA:INTRON	CERT1	ENSG00000113163.19	ENST00000646172.1:ENST00000644912.1:ENST00000644072.2:ENST00000644445.1:ENST00000357457.9:ENST00000261415.12:ENST00000642809.1:ENST00000647512.2:ENST00000380494.10:ENST00000642556.1:ENST00000646713.1:ENST00000644516.1:ENST00000645866.1:ENST00000645483.1:ENST00000642225.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	109	2	1.81439	2.631025	3.44766	0.0160379	0.00294011	0.109464	0.0483547
chr1	65056854	65056954	475458	0	-	0.39	(0.378,0.408]	chr1	57241	119	INTRON	INTRON	JAK1	ENSG00000162434.13	ENST00000672434.1:ENST00000671954.1:ENST00000673502.1:ENST00000672751.1:ENST00000672099.1	protein_coding	protein_coding	protein_coding	protein_coding	6	102	2	2.50099	2.630955	2.76092	0.00245021	0.00102361	0.0457892	0.029231300000000002
chrX	24074969	24075066	7630945	0	+	0.546392	(0.515,0.57]	chrX	781493	12	INTRON	INTRON	EIF2S3	ENSG00000130741.11	ENST00000253039.9:ENST00000457332.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	31	394	2	2.46628	2.630955	2.79563	1.2063e-5	3.40888e-6	0.00257826	0.00131232
chr11	66626766	66626865	4810904	0	+	0.515152	(0.476,0.515]	chr11	447878	2	UTR3	UTR3:EXON_MRNA:INTRON	RBM14-RBM4:RBM14	ENSG00000248643.5:ENSG00000239306.5	ENST00000412278.2:ENST00000393979.3:ENST00000511114.1:ENST00000310137.5:ENST00000421355.1:ENST00000500635.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	10	126	2	1.86723	2.63094	3.39465	0.00402303	1.63554e-4	0.0578376	0.0116917
chr8	123074128	123074227	3850240	0	+	0.50505	(0.476,0.515]	chr8	354655	3	INTRON	INTRON	TBC1D31	ENSG00000156787.17	ENST00000520368.5:ENST00000519418.5:ENST00000287380.6:ENST00000522420.5:ENST00000327098.9:ENST00000518099.5:ENST00000521676.5:ENST00000524307.5:ENST00000522276.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	69	2	1.86182	2.630925	3.40003	0.0178986	0.00139193	0.106365	0.0341261
chr1	473363	473463	355283	0	-	0.34	(0.32,0.35]	chr1	40950	931	INTRON	INTRON	ENSG00000237094	ENSG00000237094.12	ENST00000455207.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	5	80	2	1.68188	2.6308350000000003	3.57979	0.031521	0.00118589	0.144381	0.0315652
chr6	157174526	157174617	3011163	0	+	0.417582	(0.408,0.44]	chr6	281206	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ARID1B	ENSG00000049618.24	ENST00000346085.10:ENST00000636930.2:ENST00000647938.1:ENST00000350026.10:ENST00000414678.7:ENST00000319584.11:ENST00000635849.1:ENST00000637904.1:ENST00000637810.1:ENST00000637015.1:ENST00000637568.1:ENST00000635957.1:ENST00000400790.3:ENST00000637741.1:ENST00000636940.1:ENST00000478761.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	50	2	2.11447	2.6307650000000002	3.14706	0.0285207	0.00382411	0.12666	0.0562562
chr12	120874409	120874509	5435608	0	-	0.36	(0.35,0.378]	chr12	519663	389	INTRON	INTRON	SPPL3	ENSG00000157837.16	ENST00000353487.7:ENST00000536996.5:ENST00000543608.5:ENST00000543854.5	protein_coding	protein_coding	protein_coding	protein_coding	6	100	2	2.05151	2.6307400000000003	3.20997	0.00998861	3.32797e-4	0.0843858	0.0162254
chr7	105011904	105012001	3601070	0	-	0.515464	(0.515,0.57]	chr7	336036	3	EXON_LNCRNA	EXON_LNCRNA:INTRON	LINC01004	ENSG00000228393.5	ENST00000450686.1:ENST00000655204.2:ENST00000445184.1:ENST00000689371.1:ENST00000690819.1:ENST00000688692.1:ENST00000693045.1:ENST00000684783.1:ENST00000685115.1:ENST00000688127.1:ENST00000693130.1:ENST00000687259.1:ENST00000689586.1:ENST00000687408.1:ENST00000688097.1:ENST00000687900.1:ENST00000684829.1	lncRNA	lncRNA	lncRNA	lncRNA	13	165	2	2.1346	2.630705	3.12681	0.00108683	7.95825e-6	0.0303873	0.0020223
chr3	9413706	9413805	1359045	0	+	0.343434	(0.32,0.35]	chr3	142655	154	INTRON	INTRON	SETD5	ENSG00000168137.20	ENST00000402198.7:ENST00000431285.5:ENST00000683012.1:ENST00000463180.5:ENST00000478475.5:ENST00000415650.5:ENST00000682536.1:ENST00000663774.1:ENST00000665872.1:ENST00000666307.1:ENST00000693430.1:ENST00000691925.1:ENST00000684606.1:ENST00000691175.1:ENST00000688835.1:ENST00000683262.1:ENST00000443339.5:ENST00000406341.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	78	2	2.2664	2.630675	2.99495	0.0199969	0.00102621	0.109608	0.0294094
chr11	57791873	57791973	4793435	0	+	0.42	(0.408,0.44]	chr11	443736	2	SS5_PROX	SS5_PROX:INTRON	ENSG00000288534:CTNND1	ENSG00000288534.1:ENSG00000198561.16	ENST00000673781.1:ENST00000673810.1:ENST00000674116.1:ENST00000674060.1:ENST00000524630.5:ENST00000529919.5:ENST00000533189.1:ENST00000682741.1:ENST00000358694.10:ENST00000361332.8:ENST00000361391.10:ENST00000361796.9:ENST00000415361.6:ENST00000426142.6:ENST00000428599.6:ENST00000525902.5:ENST00000526357.5:ENST00000526772.5:ENST00000527467.5:ENST00000528232.5:ENST00000528621.5:ENST00000529526.5:ENST00000529873.5:ENST00000529986.5:ENST00000530094.5:ENST00000530748.5:ENST00000531014.5:ENST00000532245.5:ENST00000532463.5:ENST00000532649.5:ENST00000532787.5:ENST00000532844.5:ENST00000533667.5:ENST00000534579.5:ENST00000399050.10:ENST00000526938.5:ENST00000531007.2:ENST00000674015.1:ENST00000673826.1:ENST00000673683.1:ENST00000674106.1:ENST00000530068.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	60	2	2.30838	2.6306700000000003	2.95296	0.00929354	0.00547703	0.0817766	0.0671198
chr7	158746997	158747097	3688975	0	-	0.52	(0.515,0.57]	chr7	342335	29	INTRON	INTRON	ESYT2	ENSG00000117868.18	ENST00000251527.10:ENST00000275418.13:ENST00000652148.1	protein_coding	protein_coding	protein_coding	protein_coding	10	109	2	1.51973	2.630585	3.74144	0.0185053	1.04004e-5	0.108861	0.00235262
chr3	141884254	141884354	1526151	0	+	0.43	(0.408,0.44]	chr3	159005	63	INTRON	INTRON	ATP1B3	ENSG00000069849.11	ENST00000475483.5:ENST00000465172.5:ENST00000286371.8:ENST00000466678.5:ENST00000462082.1:ENST00000495216.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	126	2	2.47849	2.6305699999999996	2.78265	0.00155132	2.28487e-4	0.0358745	0.0133228
chr3	160411023	160411122	1544712	0	+	0.363636	(0.35,0.378]	chr3	160690	60	INTRON	INTRON	SMC4	ENSG00000113810.16	ENST00000472282.5:ENST00000472991.5:ENST00000357388.8:ENST00000469762.5:ENST00000468653.5:ENST00000467468.5:ENST00000469858.5:ENST00000489573.5:ENST00000462787.5:ENST00000344722.5:ENST00000470240.5:ENST00000497984.5:ENST00000487747.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	87	2	2.6295	2.630515	2.63153	0.00562761	0.00142732	0.0653997	0.0347139
chr1	23077035	23077131	44354	0	+	0.322917	(0.32,0.35]	chr1	5324	15	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	KDM1A	ENSG00000004487.18	ENST00000692214.1:ENST00000686934.1:ENST00000689853.1:ENST00000465864.2:ENST00000691256.1:ENST00000688122.1:ENST00000692056.1:ENST00000692853.1:ENST00000689366.1:ENST00000686270.1:ENST00000685102.1:ENST00000690627.1:ENST00000686771.1:ENST00000692209.1:ENST00000686339.1:ENST00000691813.1:ENST00000693156.1:ENST00000688235.1:ENST00000692975.1:ENST00000687202.1:ENST00000691682.1:ENST00000691404.1:ENST00000356634.7:ENST00000400181.9:ENST00000689677.1:ENST00000686793.1:ENST00000689971.1:ENST00000688943.1:ENST00000690391.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	120	2	2.44832	2.63047	2.81262	0.00311322	8.3807e-4	0.0498063	0.0263691
chr5	138020762	138020851	2730682	0	-	0.359551	(0.35,0.378]	chr5	257012	1	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	FAM13B	ENSG00000031003.11	ENST00000689681.1:ENST00000033079.7:ENST00000425075.6:ENST00000420893.6:ENST00000514310.5:ENST00000502471.5:ENST00000509596.5:ENST00000508403.5:ENST00000505961.1:ENST00000510804.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	87	2	2.46611	2.630415	2.79472	0.00303911	0.00297318	0.0501309	0.0493883
chr11	9286993	9287093	4909152	0	-	0.47	(0.44,0.476]	chr11	460137	4	SS3_PROX	SS3_PROX:INTRON	TMEM41B	ENSG00000166471.11	ENST00000524543.5:ENST00000528080.6:ENST00000299596.8:ENST00000611268.4:ENST00000533867.1:ENST00000527813.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	68	2	2.13779	2.630385	3.12298	0.0264596	4.66209e-4	0.122506	0.0195589
chr4	110047342	110047442	2226215	0	-	0.42	(0.408,0.44]	chr4	218000	16	UTR3	UTR3:EXON_MRNA	ELOVL6	ENSG00000170522.10	ENST00000394607.7:ENST00000302274.8	protein_coding	protein_coding	protein_coding	protein_coding	4	60	2	1.93002	2.630345	3.33067	0.022095	0.0024459	0.123903	0.0445752
chr14	34457796	34457896	5866093	0	-	0.53	(0.515,0.57]	chr14	557089	221	INTRON	INTRON	EGLN3:SPTSSA	ENSG00000129521.15:ENSG00000165389.7	ENST00000551935.5:ENST00000298130.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	51	2	2.17039	2.630205	3.09002	0.00900252	0.00491099	0.0851009	0.0609494
chr3	142485650	142485742	1838021	0	-	0.26087	[0,0.28]	chr3	184779	5	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	ATR	ENSG00000175054.16	ENST00000350721.9:ENST00000656590.1:ENST00000513291.2:ENST00000654170.1:ENST00000666943.1:ENST00000661310.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	53	2	2.20927	2.630205	3.05114	0.0794763	0.0075493	0.19979	0.0773151
chr1	27441923	27442022	406282	0	-	0.424242	(0.408,0.44]	chr1	48986	126	INTRON	INTRON	WASF2	ENSG00000158195.11	ENST00000618852.5:ENST00000536657.1	protein_coding	protein_coding	protein_coding	protein_coding	2	37	2	2.43988	2.63015	2.82042	0.0398236	0.0120121	0.143072	0.0962115
chr17	66421811	66421911	6663490	0	+	0.43	(0.408,0.44]	chr17	650326	576	INTRON	INTRON	PRKCA	ENSG00000154229.12	ENST00000413366.8:ENST00000578063.5:ENST00000284384.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	37	2	2.43988	2.63015	2.82042	0.0398236	0.0120121	0.143072	0.0962115
chr7	44016823	44016923	3527021	0	-	0.43	(0.408,0.44]	chr7	328878	3	SS3_PROX	SS3_PROX:INTRON	ENSG00000272655	ENSG00000272655.2	ENST00000326391.6:ENST00000418424.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	2	37	2	2.43988	2.63015	2.82042	0.0398236	0.0120121	0.143072	0.0962115
chr2	235551432	235551532	1041911	0	+	0.53	(0.515,0.57]	chr2	111222	265	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1:ENST00000402604.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	87	2	1.97876	2.630105	3.28145	0.00610685	2.1933e-4	0.0706941	0.0135522
chrX	119852072	119852172	7874463	0	-	0.44	(0.408,0.44]	chrX	801954	2	SS3_PROX	SS3_PROX:INTRON	UPF3B	ENSG00000125351.13	ENST00000276201.7:ENST00000345865.6	protein_coding	protein_coding	protein_coding	protein_coding	2	37	2	2.51492	2.6300499999999998	2.74518	0.0329839	0.0152229	0.133816	0.108535
chr22	21838133	21838233	7561091	0	-	0.49	(0.476,0.515]	chr22	773388	299	INTRON	INTRON	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	4	60	2	1.80284	2.629975	3.45711	0.033161	0.00140905	0.145899	0.0340865
chr11	77772777	77772877	4995497	0	-	0.34	(0.32,0.35]	chr11	472047	77	INTRON	INTRON	RSF1	ENSG00000048649.14	ENST00000308488.11:ENST00000528095.5:ENST00000440064.2:ENST00000467567.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	59	2	2.51061	2.629955	2.7493	0.0364463	0.00296357	0.138959	0.0500135
chr8	124505530	124505628	4043823	0	-	0.295918	(0.28,0.32]	chr8	368880	8	INTRON	INTRON	TATDN1	ENSG00000147687.19	ENST00000522927.5:ENST00000276692.11:ENST00000630259.1:ENST00000523214.5:ENST00000523631.5:ENST00000519548.5:ENST00000522810.5:ENST00000517678.5:ENST00000519776.5:ENST00000521546.5:ENST00000521973.5:ENST00000605953.5:ENST00000522310.5:ENST00000520321.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	63	2	2.13651	2.629915	3.12332	0.0265696	0.00698537	0.134088	0.0718189
chr2	65057825	65057925	798750	0	+	0.53	(0.515,0.57]	chr2	89284	9	INTRON	INTRON	CEP68	ENSG00000011523.14	ENST00000475851.1:ENST00000377990.7:ENST00000537589.1:ENST00000260569.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	43	2	1.9459	2.62989	3.31388	0.0429089	0.00174704	0.148082	0.0386026
chr2	219518867	219518967	1020355	0	+	0.47	(0.44,0.476]	chr2	109071	12	INTRON	INTRON	ASIC4	ENSG00000072182.14	ENST00000461395.5:ENST00000693692.1:ENST00000347842.8:ENST00000358078.5:ENST00000474489.5:ENST00000473709.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	68	2	2.44514	2.62988	2.81462	0.0087381	0.00247064	0.0845538	0.0446195
chr11	62854705	62854803	4961879	0	-	0.459184	(0.44,0.476]	chr11	467083	18	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SNHG1	ENSG00000255717.8	ENST00000689147.1:ENST00000686500.1:ENST00000665371.1:ENST00000687243.1:ENST00000537869.6:ENST00000686081.1:ENST00000686670.1:ENST00000690476.1:ENST00000688102.1:ENST00000691255.1:ENST00000539303.6:ENST00000538654.6:ENST00000540725.6:ENST00000658540.1:ENST00000685229.1:ENST00000686478.1:ENST00000686008.1:ENST00000692887.1:ENST00000691324.1:ENST00000692454.1:ENST00000685577.1:ENST00000693734.1:ENST00000537068.5:ENST00000537925.5:ENST00000541416.6:ENST00000541578.6:ENST00000537024.6:ENST00000686740.1:ENST00000663967.1:ENST00000670323.1:ENST00000660547.1:ENST00000689664.1:ENST00000690542.1:ENST00000539921.7:ENST00000687029.1:ENST00000661616.1:ENST00000670469.1:ENST00000664307.1:ENST00000665512.1:ENST00000656268.1:ENST00000535689.6:ENST00000663237.1:ENST00000544550.6:ENST00000660730.1:ENST00000660960.1:ENST00000662229.1:ENST00000670729.1:ENST00000655919.1:ENST00000671236.1:ENST00000667655.1:ENST00000653690.1:ENST00000661936.1:ENST00000544983.2:ENST00000535076.6:ENST00000656240.1:ENST00000539975.5:ENST00000656589.1:ENST00000545920.2:ENST00000537965.6:ENST00000670502.1:ENST00000662400.1:ENST00000663092.1:ENST00000656241.1:ENST00000652879.1:ENST00000668309.1:ENST00000545440.5:ENST00000542112.5:ENST00000541615.5:ENST00000538266.5:ENST00000545688.5:ENST00000540865.5:ENST00000545308.5:ENST00000540904.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	4	67	2	2.24189	2.629855	3.01782	0.0193405	7.8136e-4	0.108861	0.0257169
chr12	111991457	111991557	5414345	0	-	0.41	(0.408,0.44]	chr12	517084	3	SS5_PROX	SS5_PROX:INTRON	TMEM116	ENSG00000198270.13	ENST00000550831.7:ENST00000552374.7:ENST00000355445.7:ENST00000547878.6:ENST00000549537.6:ENST00000552801.6:ENST00000548283.6:ENST00000550800.6:ENST00000550037.5:ENST00000551297.6:ENST00000550020.6:ENST00000546537.6:ENST00000549425.5:ENST00000552839.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	54	2	2.27698	2.62979	2.9826	0.0583528	9.23082e-4	0.167723	0.0278392
chr7	12386155	12386252	3485259	0	-	0.195876	[0,0.28]	chr7	325953	22	INTRON	INTRON	VWDE	ENSG00000146530.15	ENST00000275358.8:ENST00000452576.6:ENST00000521169.5:ENST00000326715.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	53	2	2.57033	2.629755	2.68918	0.0305273	0.0275571	0.143385	0.123904
chr22	21838533	21838633	7561095	0	-	0.34	(0.32,0.35]	chr22	773388	303	INTRON	INTRON	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	7	119	2	2.0516	2.62974	3.20788	0.00531074	6.06812e-4	0.0659476	0.0226059
chr14	102597123	102597223	5822578	0	+	0.49	(0.476,0.515]	chr14	552490	34	INTRON	INTRON	RCOR1	ENSG00000089902.10	ENST00000262241.7	protein_coding	protein_coding	protein_coding	protein_coding	5	68	2	1.68907	2.629735	3.5704	0.0296007	8.75056e-4	0.142135	0.0270926
chr7	880988	881086	3269153	0	+	0.530612	(0.515,0.57]	chr7	303674	23	INTRON	INTRON	SUN1:GET4	ENSG00000164828.18:ENSG00000239857.7	ENST00000457861.1:ENST00000265857.8:ENST00000412734.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	139	2	2.43133	2.629705	2.82808	2.23515e-4	1.90363e-4	0.0131533	0.0126178
chr1	167546585	167546685	576968	0	-	0.44	(0.408,0.44]	chr1	69956	3	SS3_PROX	SS3_PROX:INTRON	CREG1	ENSG00000143162.9	ENST00000466652.2:ENST00000370509.5	protein_coding	protein_coding	protein_coding	protein_coding	5	68	2	1.92871	2.62969	3.33067	0.0127189	0.0024459	0.0986242	0.0445752
chr2	61354280	61354380	1129378	0	-	0.38	(0.378,0.408]	chr2	121448	32	INTRON	INTRON	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000453133.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	69	2	2.35103	2.62969	2.90835	0.014158	0.00133715	0.0959618	0.0335955
chr10	43392031	43392131	4605333	0	-	0.5	(0.476,0.515]	chr10	424249	37	INTRON	INTRON	HNRNPF	ENSG00000169813.17	ENST00000356053.7:ENST00000357065.8:ENST00000544000.5:ENST00000443950.6:ENST00000682386.1:ENST00000337970.7:ENST00000477108.5:ENST00000498176.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	49	2	2.43242	2.629575	2.82673	0.0134403	0.0091895	0.0946278	0.0855292
chr12	96369725	96369825	5394978	0	-	0.49	(0.476,0.515]	chr12	514463	345	INTRON	INTRON	CDK17	ENSG00000059758.8	ENST00000261211.8:ENST00000543119.6:ENST00000542666.5:ENST00000551816.5:ENST00000552496.5:ENST00000552262.1	protein_coding	protein_coding	protein_coding	protein_coding	3	49	2	2.43242	2.629575	2.82673	0.0134403	0.0091895	0.0946278	0.0855292
chr2	200940548	200940647	1310654	0	-	0.525253	(0.515,0.57]	chr2	137179	22	INTRON	INTRON	ORC2	ENSG00000115942.9	ENST00000234296.7:ENST00000474877.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	43	2	2.27238	2.629575	2.98677	0.0161808	0.00632549	0.101453	0.0722266
chr15	42531625	42531721	6009976	0	+	0.385417	(0.378,0.408]	chr15	572195	2	UTR3	UTR3:EXON_MRNA:INTRON	SNAP23	ENSG00000092531.10	ENST00000349777.5:ENST00000249647.8:ENST00000564153.5:ENST00000563873.5:ENST00000563830.2:ENST00000568841.5:ENST00000563333.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	15	129	2	1.08185	2.62957	4.17729	0.0491612	5.82975e-5	0.174117	0.00668534
chr3	122454987	122455084	1801010	0	-	0.309278	(0.28,0.32]	chr3	180993	6	INTRON	INTRON	KPNA1	ENSG00000114030.13	ENST00000344337.11:ENST00000470904.5:ENST00000466923.5:ENST00000485027.5:ENST00000494339.5:ENST00000465882.5:ENST00000464940.1:ENST00000482287.5:ENST00000476916.5:ENST00000493510.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	64	2	2.51488	2.62953	2.74418	0.0380957	0.00328589	0.141678	0.0527031
chr7	103353424	103353523	3373690	0	+	0.545455	(0.515,0.57]	chr7	315782	11	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	PSMC2	ENSG00000161057.13	ENST00000678493.1:ENST00000457587.5:ENST00000679205.1:ENST00000679341.1:ENST00000435765.5:ENST00000679250.1:ENST00000679046.1:ENST00000292644.5:ENST00000677281.1:ENST00000425206.6:ENST00000678488.1:ENST00000677943.1:ENST00000677769.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	99	2	2.49605	2.629525	2.763	0.00257143	2.49138e-4	0.045134	0.0140075
chr7	105051293	105051393	3374995	0	+	0.51	(0.476,0.515]	chr7	315877	99	INTRON	INTRON	KMT2E	ENSG00000005483.22	ENST00000622386.2:ENST00000257745.9:ENST00000334884.9:ENST00000311117.8:ENST00000478990.5:ENST00000495267.5:ENST00000476671.5:ENST00000667857.1:ENST00000474203.5:ENST00000482560.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	20	265	2	2.24431	2.62948	3.01465	1.19928e-4	4.2183e-5	0.00938389	0.00551568
chr15	90730428	90730528	6101042	0	+	0.47	(0.44,0.476]	chr15	580852	59	INTRON	INTRON	BLM	ENSG00000197299.13	ENST00000355112.8:ENST00000648453.1:ENST00000681142.1:ENST00000560509.5:ENST00000559724.5:ENST00000680772.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	80	2	2.35446	2.62943	2.9044	0.00536475	0.00132926	0.0642754	0.0335085
chr10	130168641	130168738	4536658	0	+	0.57732000000000006	(0.57,1]	chr10	418810	13	INTRON	INTRON	GLRX3	ENSG00000108010.12	ENST00000331244.10:ENST00000481034.1:ENST00000368644.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	21	2	2.36411	2.6293699999999998	2.89463	0.0408868	0.00788262	0.161534	0.076155
chr16	89436518	89436618	6543061	0	-	0.58	(0.57,1]	chr16	634281	48	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	21	2	2.36411	2.6293699999999998	2.89463	0.0408868	0.00788262	0.161534	0.076155
chr17	82521206	82521306	6692619	0	+	0.59	(0.57,1]	chr17	654627	5	INTRON	INTRON	FOXK2	ENSG00000141568.21	ENST00000473637.6:ENST00000335255.10:ENST00000527313.6:ENST00000570585.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	21	2	2.36411	2.6293699999999998	2.89463	0.0408868	0.00788262	0.161534	0.076155
chr17	46130133	46130233	6784237	0	-	0.38	(0.378,0.408]	chr17	669216	89	INTRON	INTRON	KANSL1	ENSG00000120071.15	ENST00000574590.6:ENST00000572904.6:ENST00000432791.7:ENST00000575318.6:ENST00000638275.1:ENST00000262419.10:ENST00000648792.1:ENST00000639531.1:ENST00000639150.1:ENST00000639853.1:ENST00000571698.2:ENST00000639375.1:ENST00000638269.1:ENST00000576248.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	114	2	2.53753	2.629335	2.72114	0.00271682	3.34676e-4	0.0467523	0.01628
chr21	22278505	22278605	7385153	0	+	0.33	(0.32,0.35]	chr21	752727	653	INTRON	INTRON	ENSG00000226043	ENSG00000226043.2	ENST00000667099.1:ENST00000654607.1:ENST00000444130.1	lncRNA	lncRNA	lncRNA	lncRNA	3	59	2	2.01768	2.629275	3.24087	0.0361337	0.00420518	0.152563	0.0572185
chr11	645154	645250	4888966	0	-	0.291667	(0.28,0.32]	chr11	457669	1	INTRON	INTRON	DEAF1	ENSG00000177030.19	ENST00000382409.4:ENST00000527170.5:ENST00000685854.1:ENST00000527658.1:ENST00000683307.1:ENST00000528864.6:ENST00000525626.6:ENST00000682936.1:ENST00000690068.1:ENST00000692634.1:ENST00000687329.1:ENST00000686001.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	63	2	2.18092	2.62918	3.07744	0.0271832	0.00604536	0.123904	0.0700813
chr5	87393883	87393977	2668724	0	-	0.297872	(0.28,0.32]	chr5	252560	6	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	CCNH	ENSG00000134480.16	ENST00000645953.1:ENST00000646883.1:ENST00000505587.5:ENST00000510921.5:ENST00000508855.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	63	2	2.18092	2.62918	3.07744	0.0271832	0.00604536	0.123904	0.0700813
chr1	37539370	37539465	424116	0	-	0.452632	(0.44,0.476]	chr1	51273	10	INTRON	INTRON	SNIP1	ENSG00000163877.11	ENST00000296215.8:ENST00000638725.1:ENST00000468040.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	38	2	2.39604	2.629175	2.86231	0.0404291	0.012214	0.161534	0.0910127
chr8	55777291	55777390	3753828	0	+	0.444444	(0.44,0.476]	chr8	349174	32	INTRON	INTRON	TGS1	ENSG00000137574.11	ENST00000260129.6:ENST00000523948.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	38	2	2.39604	2.629175	2.86231	0.0404291	0.012214	0.161534	0.0910127
chr9	92408158	92408258	4155268	0	+	0.46	(0.44,0.476]	chr9	379002	279	INTRON	INTRON	CENPP	ENSG00000188312.14	ENST00000375587.8	protein_coding	protein_coding	protein_coding	protein_coding	2	38	2	2.39604	2.629175	2.86231	0.0404291	0.012214	0.161534	0.0910127
chr6	24706037	24706136	3070590	0	-	0.343434	(0.32,0.35]	chr6	285341	13	UTR3	UTR3:EXON_MRNA	C6orf62	ENSG00000112308.13	ENST00000378119.9:ENST00000378102.3	protein_coding	protein_coding	protein_coding	protein_coding	11	199	2	2.57369	2.62911	2.68453	4.38813e-4	2.53167e-4	0.0192695	0.0141708
chr21	45496299	45496399	7420457	0	+	0.66	(0.57,1]	chr21	756552	4	SS3_PROX	SS3_PROX:INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1:ENST00000355480.10:ENST00000359759.8:ENST00000342220.9:ENST00000459895.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	50	2	2.60916	2.6290950000000004	2.64903	0.00119055	9.85026e-4	0.0315806	0.0288488
chr1	15628366	15628463	33589	0	+	0.350515	(0.35,0.378]	chr1	4084	12	INTRON	INTRON	DDI2	ENSG00000197312.12	ENST00000480945.6:ENST00000486680.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	55	2	2.04358	2.62907	3.21456	0.0329533	0.00420814	0.145171	0.0572185
chr22	19403085	19403185	7554134	0	-	0.25	[0,0.28]	chr22	772292	46	INTRON	INTRON	HIRA:C22orf39	ENSG00000100084.14:ENSG00000242259.9	ENST00000263208.5:ENST00000340170.8:ENST00000509549.5:ENST00000464189.5:ENST00000452818.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	15	321	2	2.23865	2.62896	3.01927	7.24329e-4	1.81483e-4	0.0245647	0.0122264
chr7	10741997	10742097	3484200	0	-	0.54	(0.515,0.57]	chr7	325772	1801	INTRON	INTRON	MGC4859	ENSG00000283117.1	ENST00000634803.1	lncRNA	lncRNA	lncRNA	lncRNA	5	68	2	2.53705	2.6289249999999997	2.7208	0.00306828	0.00186194	0.0494933	0.039946
chr12	93733854	93733954	5190464	0	+	0.47	(0.44,0.476]	chr12	490913	2	SS5_PROX	SS5_PROX:INTRON	CRADD	ENSG00000169372.13	ENST00000332896.8:ENST00000549615.5:ENST00000552983.5:ENST00000552033.5:ENST00000551065.5:ENST00000548483.5:ENST00000542893.2:ENST00000547383.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	59	2	2.08211	2.628915	3.17572	0.0130715	0.00427037	0.0996047	0.0573912
chr10	6165809	6165909	4386203	0	+	0.5	(0.476,0.515]	chr10	404834	14	INTRON	INTRON	PFKFB3	ENSG00000170525.21	ENST00000379789.8:ENST00000536985.6:ENST00000639949.1	protein_coding	protein_coding	protein_coding	protein_coding	6	95	2	2.47496	2.628885	2.78281	0.00323541	6.29551e-4	0.0507251	0.0226349
chr22	19888267	19888366	7555771	0	-	0.616162	(0.57,1]	chr22	772493	39	INTRON	INTRON	TXNRD2	ENSG00000184470.21	ENST00000400518.5:ENST00000542719.6:ENST00000494454.5:ENST00000474308.5:ENST00000400525.6:ENST00000400521.7:ENST00000400519.6:ENST00000634537.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:non_stop_decay:nonsense_mediated_decay	4	32	2	2.1643	2.6287149999999997	3.09313	0.00941704	0.00369015	0.0861183	0.0535094
chr1	1394053	1394146	359861	0	-	0.505376	(0.476,0.515]	chr1	41791	2	INTRON	INTRON	CCNL2	ENSG00000221978.13	ENST00000400809.8:ENST00000482621.5:ENST00000496007.5:ENST00000481223.6:ENST00000488340.5:ENST00000471930.5:ENST00000408918.8:ENST00000473872.5:ENST00000425598.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	38	560	2	2.27987	2.6286449999999997	2.97742	9.27927e-5	3.98104e-7	0.00857086	3.26778e-4
chr10	21560316	21560416	4404675	0	+	0.36	(0.35,0.378]	chr10	406446	21	INTRON	INTRON	MLLT10	ENSG00000078403.17	ENST00000651097.1:ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000650772.1:ENST00000651298.1:ENST00000495130.5:ENST00000377059.7:ENST00000476557.5:ENST00000462999.5:ENST00000430455.2:ENST00000479634.1:ENST00000480415.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	54	2	1.98929	2.628615	3.26794	0.0417909	0.00257067	0.147075	0.0466761
chr3	42629178	42629276	1406266	0	+	0.306122	(0.28,0.32]	chr3	147680	21	EXON_MRNA	EXON_MRNA:INTRON	NKTR	ENSG00000114857.19	ENST00000468735.6:ENST00000429888.5:ENST00000232978.13:ENST00000465584.5:ENST00000466553.1:ENST00000498730.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	23	445	2	2.46629	2.628565	2.79084	3.44296e-4	9.9202e-6	0.0172716	0.00229351
chr1	180717091	180717191	270447	0	+	0.47	(0.44,0.476]	chr1	31620	343	INTRON	INTRON	XPR1	ENSG00000143324.14	ENST00000367590.9:ENST00000367589.3	protein_coding	protein_coding	protein_coding	protein_coding	2	37	2	2.29842	2.6285100000000003	2.9586	0.0552483	0.00758318	0.165463	0.0773151
chr2	111364677	111364777	1210496	0	-	0.32	(0.28,0.32]	chr2	128888	37	EXON_LNCRNA	EXON_LNCRNA:INTRON	MIR4435-2HG	ENSG00000172965.17	ENST00000645030.2:ENST00000642191.1:ENST00000673798.1:ENST00000645051.2:ENST00000673649.1:ENST00000673962.1:ENST00000674132.1:ENST00000669658.1:ENST00000669917.1:ENST00000661559.1:ENST00000653687.1:ENST00000667670.1:ENST00000609220.2:ENST00000656760.1:ENST00000609902.6:ENST00000666683.1:ENST00000674070.1:ENST00000662335.1:ENST00000664422.1:ENST00000673775.1:ENST00000662889.1:ENST00000665096.1:ENST00000674092.1:ENST00000673958.1:ENST00000673770.1:ENST00000673961.1:ENST00000658936.1:ENST00000662635.1:ENST00000666204.1:ENST00000659458.1:ENST00000664443.1:ENST00000670295.1:ENST00000661655.1:ENST00000666390.1:ENST00000659079.1:ENST00000660442.1:ENST00000664009.1:ENST00000439362.6:ENST00000654473.1:ENST00000664999.1:ENST00000673728.1:ENST00000659791.1:ENST00000666144.1:ENST00000659933.1:ENST00000670715.1:ENST00000656303.1:ENST00000666367.1:ENST00000666652.1:ENST00000669050.1:ENST00000667218.1:ENST00000656067.1:ENST00000653568.1:ENST00000643013.1:ENST00000673866.1:ENST00000673700.1:ENST00000443467.6:ENST00000451884.6:ENST00000669875.1:ENST00000673653.1:ENST00000673988.1:ENST00000661945.1:ENST00000669515.1:ENST00000431385.6:ENST00000655573.1:ENST00000656416.1:ENST00000662384.1:ENST00000674037.1:ENST00000432818.5:ENST00000674013.1:ENST00000661707.1:ENST00000444301.5:ENST00000673964.1:ENST00000673845.1:ENST00000673756.1:ENST00000673960.1:ENST00000673804.1:ENST00000673632.1:ENST00000453478.2:ENST00000673937.1:ENST00000673654.1	lncRNA	lncRNA	lncRNA	lncRNA	2	46	2	2.45545	2.62851	2.80157	0.0438092	0.0147132	0.14901	0.106558
chr3	43514221	43514321	1674356	0	-	0.3	(0.28,0.32]	chr3	170972	811	INTRON	INTRON	ANO10	ENSG00000160746.13	ENST00000292246.8:ENST00000350459.8:ENST00000396091.7:ENST00000414522.6:ENST00000451430.6:ENST00000448045.1	protein_coding	protein_coding	protein_coding	protein_coding	2	46	2	2.45545	2.62851	2.80157	0.0438092	0.0147132	0.14901	0.106558
chr3	158125989	158126089	1538435	0	+	0.31	(0.28,0.32]	chr3	160262	16	INTRON	INTRON	RSRC1	ENSG00000174891.14	ENST00000480820.5:ENST00000494002.5:ENST00000295930.7:ENST00000471994.5:ENST00000683733.1:ENST00000682221.1:ENST00000683831.1:ENST00000683516.1:ENST00000482822.3:ENST00000476899.6:ENST00000464171.5:ENST00000611884.5:ENST00000682164.1:ENST00000684604.1:ENST00000683899.1:ENST00000682500.1:ENST00000684683.1:ENST00000684512.1:ENST00000683394.1:ENST00000684156.1:ENST00000312179.10:ENST00000475278.6:ENST00000480119.5:ENST00000468344.5:ENST00000471911.5:ENST00000683137.1:ENST00000477788.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	46	2	2.45545	2.62851	2.80157	0.0438092	0.0147132	0.14901	0.106558
chr5	71478459	71478559	2383806	0	+	0.29	(0.28,0.32]	chr5	229887	76	INTRON	INTRON	BDP1	ENSG00000145734.20	ENST00000358731.9:ENST00000508917.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	46	2	2.45545	2.62851	2.80157	0.0438092	0.0147132	0.14901	0.106558
chr8	67205809	67205907	3962404	0	-	0.285714	(0.28,0.32]	chr8	363559	6	INTRON	INTRON	ARFGEF1	ENSG00000066777.9	ENST00000520381.5:ENST00000518789.5:ENST00000262215.8:ENST00000522878.5:ENST00000518230.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	46	2	2.45545	2.62851	2.80157	0.0438092	0.0147132	0.14901	0.106558
chr7	17938086	17938185	3496543	0	-	0.282828	(0.28,0.32]	chr7	326520	304	INTRON	INTRON	SNX13	ENSG00000071189.21	ENST00000428135.7:ENST00000611725.4:ENST00000409076.6:ENST00000444712.5:ENST00000482558.5:ENST00000409604.1:ENST00000475800.5:ENST00000474067.5:ENST00000471744.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	75	2	2.25298	2.6284650000000003	3.00395	0.0101329	0.00791652	0.0850389	0.0797304
chr7	74889485	74889580	3556754	0	-	0.431579	(0.408,0.44]	chr7	331187	4	INTRON	INTRON	STAG3L2	ENSG00000277072.5	ENST00000650988.1:ENST00000652688.1:ENST00000426587.5:ENST00000622110.5:ENST00000618922.4:ENST00000611766.4:ENST00000622215.1	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript:transcribed_unprocessed_pseudogene	5	69	2	1.53812	2.62843	3.71874	0.0501609	3.17998e-4	0.156383	0.0159645
chr1	86918198	86918298	153628	0	+	0.23	[0,0.28]	chr1	16952	20	INTRON	INTRON	HS2ST1	ENSG00000153936.18	ENST00000370550.10:ENST00000370551.8:ENST00000687893.1:ENST00000693745.1:ENST00000689904.1:ENST00000690674.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	54	2	2.43761	2.628415	2.81922	0.0423864	0.0197411	0.161744	0.109608
chr11	66654668	66654768	4811197	0	+	0.37	(0.35,0.378]	chr11	447918	24	INTRON	INTRON	RBM4	ENSG00000173933.21	ENST00000396053.9	protein_coding	protein_coding	protein_coding	protein_coding	9	153	2	2.1497	2.6283950000000003	3.10709	0.00433	3.91305e-5	0.0579665	0.00505936
chr1	245893153	245893253	674555	0	-	0.37	(0.35,0.378]	chr1	79681	289	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000366517.5:ENST00000366516.5:ENST00000490107.6:ENST00000470510.5:ENST00000493441.5:ENST00000488153.5:ENST00000492487.5:ENST00000391836.3:ENST00000464398.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	74	2	1.77736	2.628345	3.47933	0.0225073	0.0015613	0.124921	0.0360352
chr11	96288489	96288589	5023821	0	-	0.41	(0.408,0.44]	chr11	473809	1946	INTRON	INTRON	MAML2	ENSG00000184384.14	ENST00000524717.6	protein_coding	protein_coding	protein_coding	protein_coding	5	69	2	1.66104	2.62834	3.59564	0.0349715	5.73354e-4	0.13747500000000001	0.0217398
chr6	78957576	78957676	3140836	0	-	0.22	[0,0.28]	chr6	292736	20	EXON_LNCRNA	EXON_LNCRNA:INTRON	PHIP	ENSG00000146247.14	ENST00000275034.5:ENST00000479165.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	98	2	2.0412	2.6283149999999997	3.21543	0.0106194	0.00629013	0.0914726	0.0687434
chr6	37840405	37840505	2857239	0	+	0.33	(0.32,0.35]	chr6	270225	200	INTRON	INTRON	ZFAND3	ENSG00000156639.12	ENST00000287218.9:ENST00000373391.6:ENST00000474522.5	protein_coding	protein_coding	protein_coding	protein_coding	2	43	2	2.23182	2.62826	3.0247	0.068598	0.00671684	0.184298	0.0738715
chr2	121492019	121492119	1220804	0	-	0.29	(0.28,0.32]	chr2	129999	18	INTRON	INTRON	CLASP1	ENSG00000074054.20	ENST00000263710.8:ENST00000397587.7:ENST00000541377.5:ENST00000409078.8:ENST00000455322.6:ENST00000452274.6:ENST00000418989.5:ENST00000449975.1:ENST00000474065.5:ENST00000480007.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	62	2	2.42868	2.628185	2.82769	0.0169391	0.0105331	0.103888	0.0908969
chr3	33851487	33851587	1394937	0	+	0.56	(0.515,0.57]	chr3	146115	55	INTRON	INTRON	PDCD6IP	ENSG00000170248.15	ENST00000457054.6:ENST00000648706.1:ENST00000307296.8:ENST00000465122.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	33	2	2.12971	2.62817	3.12663	0.0757903	0.00374498	0.194427	0.0562234
chr12	132819901	132820001	5450131	0	-	0.59	(0.57,1]	chr12	522103	27	INTRON	INTRON	GOLGA3	ENSG00000090615.16	ENST00000204726.9:ENST00000450791.8:ENST00000688114.1:ENST00000691696.1:ENST00000691636.1:ENST00000690897.1:ENST00000456883.7:ENST00000545875.4:ENST00000688251.1:ENST00000692951.1:ENST00000686751.1:ENST00000685580.1:ENST00000687165.1:ENST00000692384.1:ENST00000685120.1:ENST00000689813.1:ENST00000693112.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	42	2	2.37366	2.6281350000000003	2.88261	0.00373392	0.00118949	0.0535844	0.031662
chr1	58676252	58676338	467588	0	-	0.476744	(0.476,0.515]	chr1	56453	3	INTRON	INTRON	MYSM1	ENSG00000162601.11	ENST00000655340.1:ENST00000493821.6:ENST00000472487.6:ENST00000665648.1:ENST00000659812.1:ENST00000659108.1:ENST00000401044.7:ENST00000660611.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	138	2	2.57786	2.6281299999999996	2.6784	5.61257e-4	3.43839e-4	0.021915	0.0165103
chr11	5446208	5446308	4897683	0	-	0.3	(0.28,0.32]	chr11	459193	48	INTRON	INTRON	HBG2:ENSG00000239920:HBE1:OR51B5	ENSG00000196565.15:ENSG00000239920.2:ENSG00000213931.7:ENSG00000167355.8	ENST00000380252.6:ENST00000380259.7:ENST00000292896.3:ENST00000380237.5:ENST00000420726.6:ENST00000420465.6:ENST00000415970.6:ENST00000418729.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:nonsense_mediated_decay:processed_transcript	3	62	2	2.33771	2.62811	2.91851	0.0142701	0.0130672	0.103838	0.093385
chr2	107725446	107725546	1205804	0	-	0.29	(0.28,0.32]	chr2	128532	78	INTRON	INTRON	LINC01885:ENSG00000286769	ENSG00000237880.2:ENSG00000286769.1	ENST00000654481.1:ENST00000669817.1	lncRNA	lncRNA	lncRNA	lncRNA	3	62	2	2.33771	2.62811	2.91851	0.0142701	0.0130672	0.103838	0.093385
chr11	119017734	119017829	5046433	0	-	0.473684	(0.44,0.476]	chr11	475836	3	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPS25	ENSG00000118181.11	ENST00000527791.5:ENST00000532567.5:ENST00000527673.2:ENST00000527853.1:ENST00000524864.1:ENST00000528547.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	12	187	2	2.19367	2.6281049999999997	3.06254	0.00104281	3.36221e-5	0.0296876	0.00488303
chr16	90039218	90039315	6423822	0	+	0.474227	(0.44,0.476]	chr16	617136	10	INTRON	INTRON	GAS8	ENSG00000141013.17	ENST00000536122.7:ENST00000620723.4:ENST00000540721.5:ENST00000268699.9:ENST00000566266.5:ENST00000569558.5:ENST00000569399.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	37	2	2.58033	2.628025	2.67572	0.0247511	0.0212064	0.131869	0.113017
chr18	9939156	9939255	6873601	0	+	0.444444	(0.44,0.476]	chr18	680892	17	INTRON	INTRON	VAPA	ENSG00000101558.14	ENST00000400000.7:ENST00000340541.4:ENST00000584796.5:ENST00000583879.5:ENST00000583475.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	75	2	1.74644	2.62799	3.50954	0.0165016	0.00116647	0.110334	0.0312127
chr1	11089181	11089278	376787	0	-	0.360825	(0.35,0.378]	chr1	44036	6	INTRON	INTRON	EXOSC10	ENSG00000171824.14	ENST00000304457.11:ENST00000376936.9	protein_coding	protein_coding	protein_coding	protein_coding	3	54	2	2.59046	2.627965	2.66547	0.0233639	0.00528327	0.118323	0.0656295
chr1	32795285	32795383	415939	0	-	0.377551	(0.35,0.378]	chr1	50188	37	INTRON	INTRON	YARS1	ENSG00000134684.13	ENST00000373477.9:ENST00000676297.1:ENST00000674654.1:ENST00000674629.1:ENST00000675785.2:ENST00000481895.6:ENST00000616261.2:ENST00000466052.1:ENST00000470377.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	54	2	2.59046	2.627965	2.66547	0.0233639	0.00528327	0.118323	0.0656295
chr11	86034107	86034207	5014493	0	-	0.26	[0,0.28]	chr11	473022	21	INTRON	INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000630913.2:ENST00000528398.5:ENST00000356360.9:ENST00000534412.5:ENST00000531558.1:ENST00000531930.5:ENST00000532041.5:ENST00000525162.5:ENST00000528256.1:ENST00000528411.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	10	186	2	1.94627	2.627905	3.30954	0.00431604	6.69788e-4	0.0599409	0.0236302
chr17	50864017	50864090	6795330	0	-	0.328767	(0.32,0.35]	chr17	670798	1	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	TOB1	ENSG00000141232.5	ENST00000499247.3:ENST00000268957.3:ENST00000509385.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	14	211	2	1.68538	2.627825	3.57027	0.00861306	9.07093e-6	0.0784799	0.00216547
chr8	27830176	27830274	3927256	0	-	0.306122	(0.28,0.32]	chr8	359605	16	INTRON	INTRON	PBK	ENSG00000168078.10	ENST00000301905.9:ENST00000522944.5:ENST00000524266.1:ENST00000521226.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	97	2	2.05785	2.627795	3.19774	0.00560246	0.00548491	0.0678837	0.0648867
chr1	42956543	42956642	433125	0	-	0.323232	(0.32,0.35]	chr1	52506	18	INTRON	INTRON	SLC2A1	ENSG00000117394.24	ENST00000426263.10:ENST00000630287.2:ENST00000675112.1:ENST00000674765.1:ENST00000625233.2:ENST00000372500.4:ENST00000415851.6:ENST00000630821.1:ENST00000460369.3:ENST00000676097.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	69	2	2.2643	2.6277749999999997	2.99125	0.00958447	0.00712852	0.0820838	0.0756118
chr9	124519840	124519939	4346690	0	-	0.444444	(0.44,0.476]	chr9	399204	27	UTR3	UTR3:EXON_MRNA	NR6A1	ENSG00000148200.17	ENST00000487099.7	protein_coding	protein_coding	protein_coding	protein_coding	12	186	2	2.56132	2.6277749999999997	2.69423	2.11405e-4	1.73914e-4	0.0132223	0.0114435
chr19	28533999	28534099	7166435	0	-	0.53	(0.515,0.57]	chr19	724189	658	INTRON	INTRON	ENSG00000283403:ENSG00000267243	ENSG00000283403.1:ENSG00000267243.6	ENST00000592347.5:ENST00000593065.5	lncRNA	lncRNA	lncRNA	lncRNA	10	122	2	2.04673	2.6277600000000003	3.20879	0.00197667	6.40762e-5	0.0411469	0.00711194
chr9	97992044	97992143	4173126	0	+	0.40404	(0.378,0.408]	chr9	380269	70	INTRON	INTRON	ANP32B	ENSG00000136938.9	ENST00000339399.5:ENST00000473205.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	83	2	2.55607	2.6277600000000003	2.69945	0.00704647	9.70462e-4	0.0718189	0.0286926
chr22	50458279	50458377	7604265	0	-	0.469388	(0.44,0.476]	chr22	779037	13	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:INTRON	SBF1	ENSG00000100241.22	ENST00000685180.1:ENST00000689129.1:ENST00000691959.1:ENST00000380817.8:ENST00000685390.1:ENST00000685809.1:ENST00000689981.1:ENST00000691233.1:ENST00000348911.11:ENST00000688124.1:ENST00000690990.1:ENST00000693440.1:ENST00000693052.1:ENST00000688848.1:ENST00000691345.1:ENST00000686826.1:ENST00000687016.1:ENST00000690369.1:ENST00000684986.1:ENST00000687704.1:ENST00000688985.1:ENST00000686222.1:ENST00000690590.1:ENST00000691792.1:ENST00000689177.1:ENST00000686427.1:ENST00000693591.1:ENST00000688066.1:ENST00000692844.1:ENST00000470434.2:ENST00000686801.1:ENST00000685592.1:ENST00000686191.1:ENST00000693499.1:ENST00000693289.1:ENST00000687861.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	61	2	1.49942	2.62775	3.75608	0.0792118	2.6487e-4	0.199574	0.0144071
chrX	73959878	73959976	7682255	0	+	0.346939	(0.32,0.35]	chrX	786628	9	INTRON	INTRON	JPX	ENSG00000225470.8	ENST00000664637.1:ENST00000639185.1:ENST00000655090.1:ENST00000640437.1:ENST00000660546.1:ENST00000667886.1:ENST00000660840.1:ENST00000657179.1:ENST00000670506.1:ENST00000657910.1:ENST00000662120.1:ENST00000671207.1:ENST00000659254.1:ENST00000656624.1:ENST00000667573.1:ENST00000660856.1:ENST00000660836.1:ENST00000668590.1:ENST00000658649.1:ENST00000414209.6:ENST00000654137.1:ENST00000670994.1:ENST00000653479.1:ENST00000602772.5:ENST00000655879.1:ENST00000657372.1:ENST00000657096.1:ENST00000602985.6:ENST00000670685.1:ENST00000670503.1:ENST00000663027.1:ENST00000654995.1:ENST00000602895.6:ENST00000654374.1:ENST00000660087.1:ENST00000665032.1:ENST00000671336.1:ENST00000671476.1:ENST00000667057.1:ENST00000670192.1:ENST00000670464.1:ENST00000665345.1:ENST00000661546.1:ENST00000662543.1:ENST00000602938.6:ENST00000664295.1:ENST00000654005.1:ENST00000669149.1:ENST00000659852.1:ENST00000656509.1:ENST00000602294.6:ENST00000667294.1:ENST00000663470.1:ENST00000602920.6:ENST00000671021.1:ENST00000659849.1:ENST00000667937.1:ENST00000661130.1:ENST00000654196.1:ENST00000655994.1:ENST00000659373.1:ENST00000662239.1:ENST00000670805.1:ENST00000656263.1:ENST00000653069.1:ENST00000657638.1:ENST00000653808.1:ENST00000653929.1:ENST00000653885.1:ENST00000659023.1:ENST00000602546.5:ENST00000659622.1:ENST00000671518.1:ENST00000670408.1	lncRNA	lncRNA	lncRNA	lncRNA	2	43	2	2.56618	2.627695	2.68921	0.0274185	0.0230336	0.136498	0.118056
chr11	119007163	119007261	4874066	0	+	0.438776	(0.408,0.44]	chr11	455385	50	INTRON	INTRON	CENATAC	ENSG00000186166.9	ENST00000334418.6:ENST00000524670.5:ENST00000526463.5:ENST00000532132.5:ENST00000580556.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	50	2	1.94273	2.62765	3.31257	0.0456237	0.00198621	0.149888	0.0411469
chr3	47144245	47144345	1681407	0	-	0.48	(0.476,0.515]	chr3	171624	172	INTRON	INTRON	SETD2	ENSG00000181555.22	ENST00000691544.1:ENST00000638947.2:ENST00000409792.4:ENST00000412450.1	protein_coding	protein_coding	protein_coding	protein_coding	7	111	2	1.99699	2.627595	3.2582	0.0110277	4.43501e-5	0.0873897	0.00540124
chr15	65791409	65791509	6209788	0	-	0.51	(0.476,0.515]	chr15	592617	242	INTRON	INTRON	DENND4A	ENSG00000174485.16	ENST00000443035.8:ENST00000431932.6:ENST00000564674.5:ENST00000568515.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	125	2	2.31424	2.62755	2.94086	0.00308038	9.2843e-5	0.0496438	0.00806645
chrX	41207070	41207168	7645321	0	+	0.418367	(0.408,0.44]	chrX	782409	12	INTRON	INTRON	USP9X	ENSG00000124486.14	ENST00000324545.9:ENST00000378308.7:ENST00000487625.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	51	2	1.74775	2.62753	3.50731	0.0735403	8.5918e-4	0.190238	0.0265787
chr2	131212665	131212764	865485	0	+	0.494949	(0.476,0.515]	chr2	97182	11	INTRON	INTRON	PLEKHB2:POTEE	ENSG00000115762.17:ENSG00000188219.16	ENST00000404460.5:ENST00000683005.1	protein_coding	protein_coding	protein_coding	protein_coding	6	91	2	1.89682	2.627445	3.35807	0.0158424	1.37324e-4	0.101453	0.0100829
chr5	111503551	111503647	2702711	0	-	0.510417	(0.476,0.515]	chr5	254405	11	INTRON	INTRON	STARD4	ENSG00000164211.13	ENST00000296632.8:ENST00000512160.5:ENST00000511137.5:ENST00000502931.5:ENST00000505803.5:ENST00000502322.5:ENST00000509887.5:ENST00000511569.5:ENST00000511436.5:ENST00000510346.5:ENST00000455172.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	91	2	1.89682	2.627445	3.35807	0.0158424	1.37324e-4	0.101453	0.0100829
chr1	246047956	246048056	676110	0	-	0.31	(0.28,0.32]	chr1	79713	595	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000391836.3:ENST00000464398.1:ENST00000453676.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	48	2	2.38101	2.627415	2.87382	0.0456017	0.014868	0.164236	0.0989021
chr4	60653	60752	1905363	0	+	0.414141	(0.408,0.44]	chr4	191003	1	INTRON	INTRON	ZNF595	ENSG00000272602.6	ENST00000608255.2:ENST00000609518.5:ENST00000509152.3:ENST00000610261.6	protein_coding	protein_coding	protein_coding	protein_coding	14	186	2	1.50398	2.627405	3.75083	0.0120569	4.19582e-6	0.0962311	0.00148744
chr16	12744815	12744914	6447269	0	-	0.474747	(0.44,0.476]	chr16	621153	394	INTRON	INTRON	CPPED1	ENSG00000103381.12	ENST00000381774.9:ENST00000433677.6:ENST00000261660.4	protein_coding	protein_coding	protein_coding	protein_coding	4	66	2	2.47339	2.6273400000000002	2.78129	0.0090196	0.00229634	0.080367	0.0439319
chr9	135954433	135954523	4372501	0	-	0.5	(0.476,0.515]	chr9	402547	3	INTRON	INTRON	UBAC1	ENSG00000130560.9	ENST00000371756.4:ENST00000478485.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	132	2	2.43216	2.627335	2.82251	6.78359e-4	4.4076e-4	0.023827	0.018971
chr4	102865417	102865517	2213749	0	-	0.46	(0.44,0.476]	chr4	216779	374	INTRON	INTRON	UBE2D3	ENSG00000109332.20	ENST00000338145.7:ENST00000357194.10:ENST00000508238.5	protein_coding	protein_coding	protein_coding	protein_coding	3	50	2	2.60774	2.627215	2.64669	0.0255874	0.0040295	0.120269	0.0578376
chr16	645221	645317	6273203	0	+	0.5625	(0.515,0.57]	chr16	598787	2	EXON_MRNA	EXON_MRNA:INTRON	MCRIP2	ENSG00000172366.20	ENST00000611328.4:ENST00000307650.9:ENST00000491999.5:ENST00000629534.2:ENST00000474840.5:ENST00000615744.4:ENST00000620462.4:ENST00000619674.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	33	2	2.35125	2.62718	2.90311	0.0436431	0.0094233	0.162255	0.0817766
chr16	85239062	85239162	6412219	0	+	0.52	(0.515,0.57]	chr16	615455	538	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	2	33	2	2.35125	2.62718	2.90311	0.0436431	0.0094233	0.162255	0.0817766
chr16	89393947	89394043	6542626	0	-	0.53125	(0.515,0.57]	chr16	634244	9	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000647238.1:ENST00000644045.1:ENST00000643147.1:ENST00000644139.1:ENST00000568512.6:ENST00000566973.1:ENST00000562211.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	33	2	2.35125	2.62718	2.90311	0.0436431	0.0094233	0.162255	0.0817766
chr2	158479299	158479399	897363	0	+	0.52	(0.515,0.57]	chr2	99341	206	INTRON	INTRON	PKP4	ENSG00000144283.23	ENST00000389759.8:ENST00000426248.7:ENST00000389757.7:ENST00000457109.5:ENST00000452162.5:ENST00000411900.5:ENST00000421462.5:ENST00000462335.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	33	2	2.35125	2.62718	2.90311	0.0436431	0.0094233	0.162255	0.0817766
chr18	73242008	73242108	6988393	0	-	0.41	(0.408,0.44]	chr18	691704	409	INTRON	INTRON	LINC02864	ENSG00000263711.6	ENST00000584544.5:ENST00000581011.5:ENST00000581862.6:ENST00000669547.1:ENST00000661525.1:ENST00000583405.5	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	3	51	2	2.51492	2.6271649999999998	2.73941	0.0329839	0.002744	0.133816	0.0484022
chr8	140893366	140893466	4078992	0	-	0.32	(0.28,0.32]	chr8	370543	22	INTRON	INTRON	PTK2	ENSG00000169398.20	ENST00000696786.1:ENST00000522684.5:ENST00000395218.3:ENST00000521059.5:ENST00000517887.5:ENST00000519993.5:ENST00000340930.7:ENST00000519419.5:ENST00000524357.5:ENST00000521791.5:ENST00000523067.5:ENST00000520828.5:ENST00000520475.5:ENST00000519881.5:ENST00000520892.5:ENST00000523803.5:ENST00000521907.5:ENST00000517453.5:ENST00000520045.5:ENST00000521395.5:ENST00000523675.1:ENST00000521332.5:ENST00000524040.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	46	2	2.51488	2.6271649999999998	2.73945	0.0380957	0.017681	0.141678	0.11319
chr11	9176300	9176394	4908167	0	-	0.361702	(0.35,0.378]	chr11	460059	9	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	DENND5A	ENSG00000184014.9	ENST00000328194.8:ENST00000681203.1:ENST00000530780.2:ENST00000680358.1:ENST00000679999.1:ENST00000680470.1:ENST00000680599.1:ENST00000680554.1:ENST00000679745.1:ENST00000680252.1:ENST00000681425.1:ENST00000681158.1:ENST00000679460.1:ENST00000679568.1:ENST00000679446.1:ENST00000680294.1:ENST00000680742.1:ENST00000680885.1:ENST00000680576.1:ENST00000530044.5:ENST00000526707.5:ENST00000681173.1:ENST00000527896.1:ENST00000530867.2:ENST00000681915.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	55	2	2.32464	2.6270800000000003	2.92952	0.0159285	0.00881187	0.101453	0.084878
chr19	539043	539142	6991792	0	+	0.575758	(0.57,1]	chr19	692123	15	INTRON	INTRON	CDC34	ENSG00000099804.9	ENST00000215574.9:ENST00000586283.6:ENST00000607527.5:ENST00000606065.3:ENST00000606400.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	37	2	2.161	2.627065	3.09313	0.00462668	0.00369015	0.062717	0.0535094
chr16	71915961	71916050	6386814	0	+	0.494382	(0.476,0.515]	chr16	614092	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	IST1	ENSG00000182149.21	ENST00000568581.5:ENST00000540296.5:ENST00000544564.5:ENST00000541571.6:ENST00000538104.5:ENST00000535424.5:ENST00000606369.5:ENST00000537613.5:ENST00000424485.6:ENST00000566536.5:ENST00000378799.11:ENST00000538565.5:ENST00000329908.12:ENST00000538850.5:ENST00000541918.5:ENST00000378798.9:ENST00000534994.5:ENST00000539186.5:ENST00000439924.6:ENST00000626438.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	79	2	2.41328	2.6269799999999996	2.84068	0.00355364	0.00217133	0.0547657	0.0417893
chr12	123749906	123749995	5244474	0	+	0.370787	(0.35,0.378]	chr12	498631	8	INTRON	INTRON	ATP6V0A2	ENSG00000185344.15	ENST00000330342.8:ENST00000675344.1:ENST00000540368.6:ENST00000674794.1:ENST00000675260.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	40	2	2.32443	2.626975	2.92952	0.0544216	0.00881187	0.164972	0.084878
chr22	23271992	23272092	7484130	0	+	0.45	(0.44,0.476]	chr22	763580	4	SS5_PROX	SS5_PROX:INTRON	BCR	ENSG00000186716.21	ENST00000359540.7:ENST00000305877.13:ENST00000427791.1	protein_coding	protein_coding	protein_coding	protein_coding	6	75	2	1.70763	2.626975	3.54632	0.0190437	9.9951e-4	0.118994	0.0288906
chr12	55779994	55780094	5332444	0	-	0.58	(0.57,1]	chr12	509126	190	INTRON	INTRON	SARNP	ENSG00000205323.9	ENST00000546604.5:ENST00000552884.5:ENST00000336133.8:ENST00000552080.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	36	2	2.23711	2.626915	3.01672	0.0172108	5.94133e-4	0.104099	0.0221865
chr9	37778418	37778518	4251993	0	-	0.57	(0.515,0.57]	chr9	391601	13	INTRON	INTRON	EXOSC3	ENSG00000107371.14	ENST00000678095.1:ENST00000679059.1:ENST00000465229.5	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	15	202	2	2.22738	2.62681	3.02624	5.11232e-4	6.65909e-6	0.0203227	0.00194394
chr6	160065301	160065401	3023969	0	+	0.47	(0.44,0.476]	chr6	282172	4	SS5_PROX	SS5_PROX:INTRON	IGF2R	ENSG00000197081.16	ENST00000676781.1:ENST00000677704.1:ENST00000356956.6:ENST00000650503.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	66	2	2.42996	2.626735	2.82351	0.0104804	0.00191049	0.0855777	0.0403772
chr5	43296217	43296317	2614256	0	-	0.35	(0.32,0.35]	chr5	248504	3	SS3_PROX	SS3_PROX:INTRON	HMGCS1	ENSG00000112972.15	ENST00000325110.11:ENST00000433297.2	protein_coding	protein_coding	protein_coding	protein_coding	3	57	2	2.4053	2.62671	2.84812	0.0147575	0.0108284	0.0983813	0.0920575
chr1	44754091	44754170	92458	0	+	0.43038	(0.408,0.44]	chr1	12283	3	SS5_PROX	SS5_PROX:INTRON	KIF2C	ENSG00000142945.13	ENST00000452259.5:ENST00000493027.5:ENST00000372224.9:ENST00000455186.5:ENST00000372217.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	14	195	2	2.21037	2.626695	3.04302	3.81488e-4	8.76557e-5	0.0176714	0.0084151
chr16	21430806	21430905	6460622	0	-	0.30303	(0.28,0.32]	chr16	623218	50	INTRON	INTRON	NPIPB3	ENSG00000169246.16	ENST00000521589.5:ENST00000534903.1:ENST00000545358.5:ENST00000543368.1:ENST00000544154.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	140	2	2.54553	2.62667	2.70781	0.00185874	0.00110861	0.0389941	0.0305035
chr19	16101443	16101540	7026235	0	+	0.340206	(0.32,0.35]	chr19	699227	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	TPM4	ENSG00000167460.17	ENST00000646974.2:ENST00000586499.6:ENST00000647464.2:ENST00000668959.1:ENST00000590180.3:ENST00000655004.1:ENST00000642789.1:ENST00000653979.1:ENST00000645471.1:ENST00000659595.1:ENST00000647037.1:ENST00000643579.2:ENST00000586193.6:ENST00000643494.1:ENST00000670382.1:ENST00000300933.9:ENST00000646575.1:ENST00000586833.7:ENST00000642221.1:ENST00000658224.1:ENST00000344824.11:ENST00000588483.2:ENST00000664983.1:ENST00000663894.1:ENST00000588032.6:ENST00000653961.1:ENST00000591645.3:ENST00000658489.1:ENST00000591226.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	57	2	2.35591	2.62667	2.89743	0.0128129	0.0127608	0.0990564	0.0926667
chr6	28910060	28910155	3075457	0	-	0.336842	(0.32,0.35]	chr6	285936	6	INTRON	INTRON	TRIM27	ENSG00000204713.11	ENST00000377194.7:ENST00000377199.4:ENST00000481474.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	164	2	2.50827	2.62667	2.74507	6.16567e-4	6.0554e-4	0.0226059	0.0223951
chr1	89851455	89851555	159830	0	+	0.42	(0.408,0.44]	chr1	17285	44	INTRON	INTRON	LRRC8D	ENSG00000171492.14	ENST00000525774.5:ENST00000337338.9:ENST00000394593.7:ENST00000532201.5:ENST00000414841.1:ENST00000527156.1:ENST00000441269.2	protein_coding	protein_coding	protein_coding	protein_coding	15	217	2	2.25273	2.62665	3.00057	2.96082e-4	5.11639e-5	0.0154003	0.0062158
chr20	17951427	17951499	7320387	0	-	0.361111	(0.35,0.378]	chr20	745299	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SNX5	ENSG00000089006.17	ENST00000377768.7:ENST00000490175.5:ENST00000483485.5:ENST00000377759.9:ENST00000476648.5:ENST00000463050.5:ENST00000431277.5:ENST00000419004.2:ENST00000494401.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	40	2	2.60341	2.6266049999999996	2.6498	0.0275785	0.0210137	0.123904	0.122348
chr5	179774877	179774973	2561468	0	+	0.354167	(0.35,0.378]	chr5	244988	1	UTR3	UTR3:EXON_MRNA	MAML1	ENSG00000161021.13	ENST00000292599.4	protein_coding	protein_coding	protein_coding	protein_coding	2	40	2	2.60341	2.6266049999999996	2.6498	0.0275785	0.0210137	0.123904	0.122348
chr6	117577147	117577247	3198137	0	-	0.36	(0.35,0.378]	chr6	297927	3	SS5_PROX	SS5_PROX:INTRON	GOPC	ENSG00000047932.14	ENST00000052569.10:ENST00000368498.7:ENST00000535237.2	protein_coding	protein_coding	protein_coding	protein_coding	2	40	2	2.60341	2.6266049999999996	2.6498	0.0275785	0.0210137	0.123904	0.122348
chr1	23333117	23333217	399476	0	-	0.48	(0.476,0.515]	chr1	47866	2	SS5_PROX	SS5_PROX:INTRON	HNRNPR	ENSG00000125944.21	ENST00000478691.5:ENST00000302271.11:ENST00000374616.7:ENST00000374612.5:ENST00000675048.1:ENST00000606561.5:ENST00000427764.3:ENST00000463552.5:ENST00000470941.5:ENST00000476451.2	protein_coding	protein_coding	protein_coding	protein_coding	18	256	2	2.17653	2.62653	3.07653	3.07144e-4	1.50767e-5	0.0156703	0.00311444
chr4	17625557	17625655	1926962	0	+	0.285714	(0.28,0.32]	chr4	193699	19	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	MED28	ENSG00000118579.13	ENST00000237380.12:ENST00000503945.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	86	2	2.09198	2.6264950000000002	3.16101	0.00780964	0.0061861	0.0788246	0.0677395
chr3	172783498	172783598	1563557	0	+	0.28	[0,0.28]	chr3	161790	3	SS3_PROX	SS3_PROX:INTRON	ECT2	ENSG00000114346.14	ENST00000232458.9:ENST00000540509.5:ENST00000392692.8:ENST00000417960.5:ENST00000441497.6:ENST00000444250.1	protein_coding	protein_coding	protein_coding	protein_coding	4	97	2	2.38757	2.626465	2.86536	0.0552962	7.2634e-4	0.165463	0.0245647
chr15	65740246	65740342	6209268	0	-	0.395833	(0.378,0.408]	chr15	592585	10	INTRON	INTRON	DENND4A	ENSG00000174485.16	ENST00000443035.8:ENST00000431932.6:ENST00000635620.2:ENST00000564674.5:ENST00000568515.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	51	2	2.46345	2.626455	2.78946	0.0158859	0.00827342	0.101453	0.0813266
chr8	52711182	52711282	3951076	0	-	0.39	(0.378,0.408]	chr8	362390	239	INTRON	INTRON	RB1CC1	ENSG00000023287.13	ENST00000025008.10:ENST00000435644.6:ENST00000521611.1:ENST00000518710.5:ENST00000517963.1:ENST00000518211.1:ENST00000518468.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	51	2	2.46345	2.626455	2.78946	0.0158859	0.00827342	0.101453	0.0813266
chr22	21852527	21852627	7561235	0	-	0.45	(0.44,0.476]	chr22	773388	443	INTRON	INTRON	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	18	266	2	2.33664	2.626445	2.91625	1.37815e-4	2.61299e-5	0.0101084	0.00422952
chr7	123727120	123727220	3632442	0	-	0.4	(0.378,0.408]	chr7	337581	175	INTRON	INTRON	WASL	ENSG00000106299.8	ENST00000223023.5	protein_coding	protein_coding	protein_coding	protein_coding	10	152	2	2.56264	2.626435	2.69023	0.00140735	1.31786e-4	0.0340865	0.00990153
chr1	108962776	108962870	519174	0	-	0.62766	(0.57,1]	chr1	60936	6	UTR5	UTR5:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CLCC1	ENSG00000121940.17	ENST00000690509.1:ENST00000687328.1:ENST00000685014.1:ENST00000685540.1:ENST00000686576.1:ENST00000688070.1:ENST00000691513.1:ENST00000686821.1:ENST00000692511.1:ENST00000689479.1:ENST00000687646.1:ENST00000687998.1:ENST00000687226.1:ENST00000693336.1:ENST00000689991.1:ENST00000687591.1:ENST00000691777.1:ENST00000690756.1:ENST00000688778.1:ENST00000685104.1:ENST00000689103.1:ENST00000687734.1:ENST00000686434.1:ENST00000685497.1:ENST00000691342.1:ENST00000686776.1:ENST00000692342.1:ENST00000689351.1:ENST00000692584.1:ENST00000692775.1:ENST00000675018.1:ENST00000690781.1:ENST00000691556.1:ENST00000689189.1:ENST00000687099.1:ENST00000685791.1:ENST00000687865.1:ENST00000687449.1:ENST00000688285.1:ENST00000369968.7:ENST00000674992.1:ENST00000675001.1:ENST00000369969.7:ENST00000356970.6:ENST00000688610.1:ENST00000675128.1:ENST00000693089.1:ENST00000675571.1:ENST00000675650.1:ENST00000369970.8:ENST00000674561.2:ENST00000675654.1:ENST00000675790.1:ENST00000675584.1:ENST00000692795.1:ENST00000691731.1:ENST00000689359.1:ENST00000676392.2:ENST00000676391.2:ENST00000676454.1:ENST00000674849.1:ENST00000675956.1:ENST00000302500.5:ENST00000675508.1:ENST00000688168.1:ENST00000693673.1:ENST00000692404.1:ENST00000686078.1:ENST00000690874.1:ENST00000692732.1:ENST00000685628.1:ENST00000676306.1:ENST00000676059.2:ENST00000674527.1:ENST00000691876.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	36	2	2.38391	2.626415	2.86892	0.0104374	0.00125753	0.0902296	0.0323608
chr8	140629625	140629724	4076507	0	-	0.59596	(0.57,1]	chr8	370289	24	INTRON	INTRON	AGO2	ENSG00000123908.12	ENST00000220592.10:ENST00000519980.5:ENST00000523609.5:ENST00000517293.5:ENST00000518019.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	36	2	2.38391	2.626415	2.86892	0.0104374	0.00125753	0.0902296	0.0323608
chr16	31180922	31181019	6340560	0	+	0.536082	(0.515,0.57]	chr16	608317	3	INTRON	INTRON	FUS	ENSG00000089280.19	ENST00000566605.5:ENST00000254108.12:ENST00000380244.7:ENST00000487045.6:ENST00000487509.6:ENST00000568685.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	41	484	2	2.28206	2.62634	2.97062	2.6078e-5	1.32987e-6	0.0042231	6.78568e-4
chr10	48413263	48413363	4432062	0	+	0.42	(0.408,0.44]	chr10	408600	27	INTRON	INTRON	MAPK8	ENSG00000107643.17	ENST00000395611.7:ENST00000374189.6:ENST00000429041.6:ENST00000374179.8:ENST00000360332.7:ENST00000374182.7:ENST00000374176.8:ENST00000374174.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	37	2	2.36073	2.6263300000000003	2.89193	0.0481658	0.00950364	0.153019	0.0863579
chr12	132770229	132770324	5449596	0	-	0.410526	(0.408,0.44]	chr12	521960	15	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	GOLGA3	ENSG00000090615.16	ENST00000204726.9:ENST00000450791.8:ENST00000693666.1:ENST00000690057.1:ENST00000688114.1:ENST00000687190.1:ENST00000690511.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	37	2	2.36073	2.6263300000000003	2.89193	0.0481658	0.00950364	0.153019	0.0863579
chr2	171709672	171709772	917931	0	+	0.41	(0.408,0.44]	chr2	101104	19	INTRON	INTRON	DYNC1I2	ENSG00000077380.16	ENST00000340296.8:ENST00000452242.5:ENST00000397119.8:ENST00000410079.7:ENST00000438879.5:ENST00000508530.5:ENST00000409197.5:ENST00000456808.5:ENST00000409317.5:ENST00000409773.5:ENST00000411953.5:ENST00000409453.5:ENST00000445378.5:ENST00000435234.5:ENST00000443458.5:ENST00000412370.5:ENST00000425485.5:ENST00000423910.5:ENST00000430778.5:ENST00000422646.1:ENST00000482454.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	37	2	2.36073	2.6263300000000003	2.89193	0.0481658	0.00950364	0.153019	0.0863579
chr3	100290077	100290177	1465864	0	+	0.44	(0.408,0.44]	chr3	153614	1	SS3_PROX	SS3_PROX:INTRON	TBC1D23	ENSG00000036054.13	ENST00000394144.9:ENST00000485687.5:ENST00000344949.9:ENST00000486274.5:ENST00000471098.1:ENST00000475134.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	37	2	2.36073	2.6263300000000003	2.89193	0.0481658	0.00950364	0.153019	0.0863579
chr7	92346357	92346456	3353806	0	+	0.434343	(0.408,0.44]	chr7	312530	9	INTRON	INTRON	ANKIB1	ENSG00000001629.10	ENST00000265742.8:ENST00000413588.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	37	2	2.36073	2.6263300000000003	2.89193	0.0481658	0.00950364	0.153019	0.0863579
chr7	139382041	139382141	3437817	0	+	0.44	(0.408,0.44]	chr7	320340	55	INTRON	INTRON	LUC7L2:FMC1-LUC7L2	ENSG00000146963.18:ENSG00000269955.2	ENST00000541170.7:ENST00000541515.3:ENST00000608368.5:ENST00000619796.4:ENST00000354926.9:ENST00000456182.5:ENST00000263545.7:ENST00000463912.5:ENST00000498518.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	37	2	2.36073	2.6263300000000003	2.89193	0.0481658	0.00950364	0.153019	0.0863579
chr8	144454949	144455048	4086345	0	-	0.424242	(0.408,0.44]	chr8	372101	16	EXON_MRNA	EXON_MRNA:INTRON	CYHR1	ENSG00000187954.13	ENST00000438911.6:ENST00000530374.6:ENST00000528663.1:ENST00000526887.5:ENST00000533173.1:ENST00000528558.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	37	2	2.36073	2.6263300000000003	2.89193	0.0481658	0.00950364	0.153019	0.0863579
chr3	44801149	44801249	1412629	0	+	0.58	(0.57,1]	chr3	148217	3	SS3_PROX	SS3_PROX:INTRON	KIF15	ENSG00000163808.17	ENST00000438321.5:ENST00000326047.9:ENST00000481166.6:ENST00000425755.5:ENST00000493134.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	27	2	2.02391	2.626235	3.22856	0.0339274	0.00205928	0.134508	0.0420839
chr1	155489444	155489544	562158	0	-	0.55	(0.515,0.57]	chr1	67101	66	INTRON	INTRON	ASH1L	ENSG00000116539.14	ENST00000676814.1:ENST00000392403.8:ENST00000368346.7:ENST00000677213.1:ENST00000678117.1:ENST00000679097.1:ENST00000679333.1:ENST00000677042.1:ENST00000678699.1:ENST00000677825.1:ENST00000679133.1:ENST00000548830.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	32	2	2.34087	2.6261349999999997	2.9114	0.0469761	0.00826019	0.151917	0.0813266
chr15	64372855	64372955	6205002	0	-	0.53	(0.515,0.57]	chr15	591788	3	SS5_PROX	SS5_PROX:INTRON	ENSG00000259316:PCLAF	ENSG00000259316.12:ENSG00000166803.14	ENST00000634251.1:ENST00000634847.3:ENST00000634318.1:ENST00000635160.1:ENST00000635704.1:ENST00000634529.1:ENST00000635511.1:ENST00000635605.1:ENST00000635593.1:ENST00000634259.2:ENST00000560278.2:ENST00000635413.1:ENST00000634538.1:ENST00000635320.1:ENST00000558783.2:ENST00000300035.9:ENST00000380258.6:ENST00000559519.5:ENST00000558008.3:ENST00000558043.5:ENST00000560234.1:ENST00000559280.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	32	2	2.34087	2.6261349999999997	2.9114	0.0469761	0.00826019	0.151917	0.0813266
chr22	17900541	17900641	7549422	0	-	0.55	(0.515,0.57]	chr22	771725	3	SS5_PROX	SS5_PROX:INTRON	MICAL3	ENSG00000243156.9	ENST00000441493.7:ENST00000672019.1:ENST00000400561.6:ENST00000495076.5:ENST00000414725.6:ENST00000383094.7:ENST00000585038.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	32	2	2.34087	2.6261349999999997	2.9114	0.0469761	0.00826019	0.151917	0.0813266
chr6	80009086	80009180	2907623	0	+	0.468085	(0.44,0.476]	chr6	274703	2	INTRON	INTRON	TTK	ENSG00000112742.10	ENST00000509894.5:ENST00000230510.7:ENST00000369798.7:ENST00000504040.1:ENST00000430061.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	49	2	2.33272	2.62611	2.9195	0.0129984	0.0102021	0.0991656	0.0850389
chr9	130608493	130608593	4213383	0	+	0.47	(0.44,0.476]	chr9	386279	1	SS5_PROX	SS5_PROX:INTRON	FUBP3	ENSG00000107164.16	ENST00000319725.10:ENST00000650723.1:ENST00000465949.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	49	2	2.33272	2.62611	2.9195	0.0129984	0.0102021	0.0991656	0.0850389
chr3	12591340	12591432	1616675	0	-	0.380435	(0.378,0.408]	chr3	166901	5	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RAF1	ENSG00000132155.14	ENST00000688543.1:ENST00000685348.1:ENST00000251849.9:ENST00000442415.7:ENST00000690585.1:ENST00000691888.1:ENST00000688444.1:ENST00000692093.1:ENST00000691724.1:ENST00000423275.6:ENST00000687326.1:ENST00000688803.1:ENST00000689876.1:ENST00000686455.1:ENST00000684903.1:ENST00000692830.1:ENST00000693312.1:ENST00000690460.1:ENST00000692773.1:ENST00000688625.1:ENST00000692069.1:ENST00000693664.1:ENST00000686762.1:ENST00000692311.1:ENST00000692558.1:ENST00000691779.1:ENST00000685738.1:ENST00000690397.1:ENST00000687923.1:ENST00000688269.1:ENST00000693705.1:ENST00000689097.1:ENST00000691899.1:ENST00000689914.1:ENST00000690625.1:ENST00000432427.3:ENST00000689389.1:ENST00000687257.1:ENST00000475353.2:ENST00000686409.1:ENST00000685653.1:ENST00000689540.1:ENST00000691396.1:ENST00000687505.1:ENST00000685437.1:ENST00000689418.1:ENST00000688914.1:ENST00000465826.6:ENST00000688326.1:ENST00000494557.2:ENST00000687940.1:ENST00000689481.1:ENST00000693069.1:ENST00000491290.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	85	2	1.674	2.626105	3.57821	0.0159536	9.60401e-4	0.109464	0.0282401
chr17	28669911	28670010	6584452	0	+	0.292929	(0.28,0.32]	chr17	640008	72	INTRON	INTRON	SUPT6H	ENSG00000109111.15	ENST00000347486.8:ENST00000314616.11	protein_coding	protein_coding	protein_coding	protein_coding	3	62	2	2.4721	2.6260700000000003	2.78004	0.0193244	0.00906617	0.108861	0.0854289
chr4	70975868	70975965	1971245	0	+	0.350515	(0.35,0.378]	chr4	197600	7	EXON_MRNA	EXON_MRNA:INTRON	MOB1B	ENSG00000173542.9	ENST00000509041.5:ENST00000309395.7:ENST00000396051.2:ENST00000511449.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	12	197	2	2.53498	2.6260399999999997	2.7171	0.00138346	3.6835e-5	0.0338784	0.00485851
chr1	27483589	27483689	406699	0	-	0.54	(0.515,0.57]	chr1	48986	543	INTRON	INTRON	WASF2	ENSG00000158195.11	ENST00000618852.5:ENST00000536657.1	protein_coding	protein_coding	protein_coding	protein_coding	4	51	2	2.22166	2.6260149999999998	3.03037	0.00735516	0.00608732	0.0765982	0.0676501
chr17	40834679	40834778	6610672	0	+	0.424242	(0.408,0.44]	chr17	643891	4	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	KRT10-AS1	ENSG00000167920.11	ENST00000436612.5:ENST00000301665.8:ENST00000668620.1:ENST00000692645.1:ENST00000666187.1:ENST00000654043.1:ENST00000662074.1:ENST00000671399.1:ENST00000670968.1	lncRNA	lncRNA	lncRNA	lncRNA	2	37	2	2.58624	2.6260149999999998	2.66579	0.0273686	0.019342	0.123904	0.119831
chr21	34082311	34082411	7401180	0	+	0.41	(0.408,0.44]	chr21	753967	82	INTRON	INTRON	MRPS6:SLC5A3	ENSG00000243927.6:ENSG00000198743.7	ENST00000488492.5:ENST00000477091.5:ENST00000399312.3:ENST00000381151.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	37	2	2.58624	2.6260149999999998	2.66579	0.0273686	0.019342	0.123904	0.119831
chr6	34691746	34691846	3086170	0	-	0.43	(0.408,0.44]	chr6	288696	199	INTRON	INTRON	ILRUN	ENSG00000196821.10	ENST00000374026.7:ENST00000374023.8	protein_coding	protein_coding	protein_coding	protein_coding	2	37	2	2.58624	2.6260149999999998	2.66579	0.0273686	0.019342	0.123904	0.119831
chr8	123040174	123040274	4041241	0	-	0.44	(0.408,0.44]	chr8	368554	91	INTRON	INTRON	DERL1	ENSG00000136986.10	ENST00000259512.9:ENST00000405944.7:ENST00000419562.6	protein_coding	protein_coding	protein_coding	protein_coding	2	37	2	2.58624	2.6260149999999998	2.66579	0.0273686	0.019342	0.123904	0.119831
chr15	101288533	101288619	6269976	0	-	0.383721	(0.378,0.408]	chr15	598011	2	SS3_PROX	SS3_PROX:INTRON	SNRPA1	ENSG00000131876.18	ENST00000254193.11:ENST00000558036.5:ENST00000559309.5:ENST00000394082.8:ENST00000540017.6:ENST00000560496.5:ENST00000560383.5:ENST00000558059.5:ENST00000560987.5:ENST00000560856.5:ENST00000558020.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	69	2	2.5938	2.625975	2.65815	0.00614976	0.00391167	0.0676501	0.0569957
chr8	47899604	47899693	3945125	0	-	0.370787	(0.35,0.378]	chr8	361835	7	INTRON	INTRON	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7	protein_coding	protein_coding	protein_coding	protein_coding	20	329	2	2.61091	2.625975	2.64104	9.67114e-5	2.82783e-5	0.0088345	0.00422078
chr10	74112512	74112612	4455671	0	+	0.59	(0.57,1]	chr10	411502	4	SS5_PROX	SS5_PROX:INTRON	VCL	ENSG00000035403.18	ENST00000623461.3:ENST00000372755.7:ENST00000624354.3:ENST00000211998.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	27	2	2.33295	2.62592	2.91889	0.0122896	0.00719009	0.091087	0.0756118
chr16	85495791	85495891	6414788	0	+	0.6	(0.57,1]	chr16	615465	1365	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	3	27	2	2.33295	2.62592	2.91889	0.0122896	0.00719009	0.091087	0.0756118
chr17	1372840	1372940	6699335	0	-	0.59	(0.57,1]	chr17	655552	27	INTRON	INTRON	YWHAE	ENSG00000108953.17	ENST00000264335.13:ENST00000571732.5:ENST00000573026.1:ENST00000573196.5:ENST00000575977.1:ENST00000469398.5:ENST00000486241.1:ENST00000489287.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	27	2	2.33295	2.62592	2.91889	0.0122896	0.00719009	0.091087	0.0756118
chr9	136823959	136824059	4221906	0	+	0.49	(0.476,0.515]	chr9	387678	3	SS5_PROX	SS5_PROX:INTRON	RABL6	ENSG00000196642.19	ENST00000371671.9:ENST00000311502.12:ENST00000484471.6:ENST00000371663.10:ENST00000357466.6:ENST00000464941.5:ENST00000629216.2:ENST00000436380.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	68	2	1.71266	2.6258049999999997	3.53895	0.0293304	0.00075485700000000005	0.128055	0.0251966
chr1	92839954	92840050	162511	0	+	0.416667	(0.408,0.44]	chr1	17543	20	INTRON	INTRON	RPL5	ENSG00000122406.14	ENST00000645300.1:ENST00000370321.8:ENST00000645119.1:ENST00000497519.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	111	2	2.38802	2.625795	2.86357	0.00178825	5.90913e-4	0.0392749	0.0225024
chr5	171399154	171399253	2546683	0	+	0.383838	(0.378,0.408]	chr5	243099	58	INTRON	INTRON	NPM1	ENSG00000181163.14	ENST00000517671.5:ENST00000676613.1:ENST00000678186.1:ENST00000678267.1:ENST00000677297.1:ENST00000521672.6:ENST00000679190.1:ENST00000677467.1:ENST00000678280.1:ENST00000676625.1:ENST00000679006.1:ENST00000351986.10:ENST00000676504.1:ENST00000676589.1:ENST00000677357.1:ENST00000679233.1:ENST00000296930.10:ENST00000393820.2:ENST00000521260.2:ENST00000518587.2:ENST00000678774.1:ENST00000677600.1:ENST00000677741.1:ENST00000677325.1:ENST00000677672.1:ENST00000677907.1:ENST00000677904.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	62	2	1.77782	2.625795	3.47377	0.0388177	0.00103087	0.143072	0.0294094
chr7	157345254	157345353	3455383	0	+	0.414141	(0.408,0.44]	chr7	323052	48	INTRON	INTRON	DNAJB6	ENSG00000105993.15	ENST00000441561.5:ENST00000429029.6:ENST00000262177.9:ENST00000486083.6:ENST00000417758.5:ENST00000459889.5:ENST00000443280.5:ENST00000488001.5:ENST00000441291.5:ENST00000437030.5:ENST00000412557.5:ENST00000453383.5:ENST00000439402.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	102	2	1.82326	2.62577	3.42828	0.0141799	9.1223e-5	0.0959618	0.00798362
chr1	228221286	228221385	331366	0	+	0.525253	(0.515,0.57]	chr1	38254	13	INTRON	INTRON	OBSCN	ENSG00000154358.23	ENST00000570156.7:ENST00000680850.1:ENST00000284548.16:ENST00000422127.5:ENST00000636476.2:ENST00000662438.1:ENST00000366704.2:ENST00000668066.1	protein_coding	protein_coding	protein_coding	protein_coding	2	32	2	2.56306	2.6256950000000003	2.68833	0.0247751	0.0184931	0.131869	0.108861
chr11	34052867	34052923	4767655	0	+	0.535714	(0.515,0.57]	chr11	440934	1	SS5_PROX	SS5_PROX:INTRON	CAPRIN1	ENSG00000135387.21	ENST00000341394.9:ENST00000528856.5:ENST00000389645.7:ENST00000534042.5:ENST00000534825.5:ENST00000532820.5:ENST00000530820.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	32	2	2.56306	2.6256950000000003	2.68833	0.0247751	0.0184931	0.131869	0.108861
chr16	85092163	85092261	6411501	0	+	0.55102	(0.515,0.57]	chr16	615446	40	UTR3	UTR3:EXON_MRNA	KIAA0513	ENSG00000135709.14	ENST00000538274.6:ENST00000683363.1:ENST00000566428.5	protein_coding	protein_coding	protein_coding	protein_coding	2	32	2	2.56306	2.6256950000000003	2.68833	0.0247751	0.0184931	0.131869	0.108861
chr18	12701892	12701985	6949721	0	-	0.526882	(0.515,0.57]	chr18	687502	4	INTRON	INTRON	CEP76	ENSG00000101624.11	ENST00000590143.5:ENST00000262127.7:ENST00000423709.6:ENST00000593250.5:ENST00000587929.1:ENST00000586887.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	32	2	2.56306	2.6256950000000003	2.68833	0.0247751	0.0184931	0.131869	0.108861
chr7	100314921	100315021	3586557	0	-	0.57	(0.515,0.57]	chr7	334330	138	INTRON	INTRON	PMS2P1	ENSG00000078319.11	ENST00000685724.1:ENST00000692351.1:ENST00000685541.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	2	32	2	2.56306	2.6256950000000003	2.68833	0.0247751	0.0184931	0.131869	0.108861
chr13	25312482	25312582	5457282	0	+	0.51	(0.476,0.515]	chr13	522896	2	SS3_PROX	SS3_PROX:INTRON	NUP58	ENSG00000139496.17	ENST00000481980.2:ENST00000490231.6:ENST00000695571.1:ENST00000477876.2:ENST00000695572.1:ENST00000463407.6:ENST00000695573.1:ENST00000381736.8:ENST00000695583.1:ENST00000465068.5:ENST00000466694.6:ENST00000381718.8:ENST00000695575.1:ENST00000695574.1:ENST00000495460.2:ENST00000381747.7:ENST00000695576.1:ENST00000394327.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	79	2	2.21025	2.62561	3.04097	0.00913757	7.0601e-4	0.0812335	0.0241881
chr4	82839646	82839745	2179556	0	-	0.323232	(0.32,0.35]	chr4	214267	83	INTRON	INTRON	SEC31A	ENSG00000138674.17	ENST00000395310.7:ENST00000513858.5:ENST00000348405.8:ENST00000503937.5:ENST00000448323.5:ENST00000311785.11:ENST00000509142.5:ENST00000443462.6:ENST00000500777.6:ENST00000505472.5:ENST00000355196.6:ENST00000508502.5:ENST00000264405.9:ENST00000505984.5:ENST00000511338.1:ENST00000515749.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	78	2	2.22429	2.625575	3.02686	0.0226421	8.86699e-4	0.117557	0.0271952
chr5	149539394	149539494	2750961	0	-	0.43	(0.408,0.44]	chr5	259082	75	INTRON	INTRON	CSNK1A1	ENSG00000113712.19	ENST00000261798.10:ENST00000377843.8:ENST00000657001.1:ENST00000515768.6:ENST00000606719.6:ENST00000657462.1:ENST00000661952.1:ENST00000504676.5:ENST00000515435.5:ENST00000662268.1:ENST00000657706.1:ENST00000670598.1:ENST00000523203.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	96	2	2.48326	2.62547	2.76768	0.00324772	6.71664e-4	0.0508595	0.0235155
chr2	169706001	169706101	907187	0	+	0.38	(0.378,0.408]	chr2	100116	44	INTRON	INTRON	KLHL23	ENSG00000213160.10	ENST00000498202.6:ENST00000272797.8:ENST00000602521.1	protein_coding	protein_coding	protein_coding	protein_coding	2	38	2	2.46373	2.62539	2.78705	0.0382831	0.0135539	0.141795	0.101363
chr3	47733157	47733256	1684585	0	-	0.40404	(0.378,0.408]	chr3	172094	37	INTRON	INTRON	SMARCC1	ENSG00000173473.11	ENST00000254480.10:ENST00000425518.5:ENST00000485833.1:ENST00000454240.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	38	2	2.46373	2.62539	2.78705	0.0382831	0.0135539	0.141795	0.101363
chr6	131705997	131706097	2960888	0	+	0.38	(0.378,0.408]	chr6	278351	120	INTRON	INTRON	ENPP3	ENSG00000154269.15	ENST00000414305.5:ENST00000357639.8:ENST00000358229.6	protein_coding	protein_coding	protein_coding	protein_coding	2	38	2	2.46373	2.62539	2.78705	0.0382831	0.0135539	0.141795	0.101363
chr8	140208311	140208411	4072831	0	-	0.38	(0.378,0.408]	chr8	370046	1263	INTRON	INTRON	TRAPPC9	ENSG00000167632.18	ENST00000648948.2:ENST00000438773.4:ENST00000520857.5:ENST00000521667.5:ENST00000517667.5:ENST00000520532.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	38	2	2.46373	2.62539	2.78705	0.0382831	0.0135539	0.141795	0.101363
chr2	38748478	38748578	1099850	0	-	0.33	(0.32,0.35]	chr2	117997	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SRSF7	ENSG00000115875.19	ENST00000446327.6:ENST00000313117.11:ENST00000425778.5:ENST00000425941.6:ENST00000452806.5:ENST00000409276.5:ENST00000432873.5:ENST00000431066.5:ENST00000443213.5:ENST00000487773.1:ENST00000415527.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	25	466	2	2.55119	2.625325	2.69946	6.7061e-5	3.05774e-5	0.00678102	0.00459173
chr19	49161301	49161399	7089067	0	+	0.408163	(0.378,0.408]	chr19	709755	15	INTRON	INTRON	TRPM4	ENSG00000130529.16	ENST00000598691.5:ENST00000598697.5:ENST00000252826.10:ENST00000595519.5:ENST00000427978.6:ENST00000598502.5:ENST00000596338.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	39	2	2.13703	2.625315	3.1136	0.0797592	0.00443339	0.19979	0.061054
chr21	43758739	43758838	7413572	0	+	0.393939	(0.378,0.408]	chr21	755598	28	UTR3	UTR3:EXON_MRNA	PDXK	ENSG00000160209.19	ENST00000468090.5:ENST00000291565.9:ENST00000467908.1	protein_coding	protein_coding	protein_coding	protein_coding	2	39	2	2.13703	2.625315	3.1136	0.0797592	0.00443339	0.19979	0.061054
chr17	28145667	28145767	6583553	0	+	0.44	(0.408,0.44]	chr17	639849	126	INTRON	INTRON	NLK	ENSG00000087095.13	ENST00000407008.8:ENST00000496808.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	80	2	2.19524	2.625285	3.05533	0.00990486	6.50769e-4	0.0838372	0.0231135
chr4	70915641	70915740	1970638	0	+	0.535354	(0.515,0.57]	chr4	197571	127	INTRON	INTRON	MOB1B	ENSG00000173542.9	ENST00000502869.5:ENST00000509041.5:ENST00000309395.7:ENST00000396051.2:ENST00000511449.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	69	2	2.48902	2.625255	2.7614899999999998	0.00760558	6.09302e-4	0.0749571	0.0223951
chr4	55396803	55396896	1960595	0	+	0.376344	(0.35,0.378]	chr4	196538	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TMEM165	ENSG00000134851.13	ENST00000381334.10:ENST00000506198.5:ENST00000508404.5:ENST00000514070.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	17	145	2	1.11595	2.62525	4.13455	0.0396914	8.38246e-5	0.161534	0.00817009
chr1	160316009	160316108	572039	0	-	0.474747	(0.44,0.476]	chr1	69341	15	INTRON	INTRON	COPA	ENSG00000122218.17	ENST00000241704.8:ENST00000696204.1:ENST00000696203.1:ENST00000696202.1:ENST00000649963.1:ENST00000696208.1:ENST00000696207.1:ENST00000696206.1:ENST00000649676.1:ENST00000368069.7:ENST00000647693.1:ENST00000649787.1:ENST00000650154.1:ENST00000647799.1:ENST00000648805.1:ENST00000647683.1:ENST00000649231.1:ENST00000648501.1:ENST00000696209.1:ENST00000696210.1:ENST00000696211.1:ENST00000647899.1:ENST00000696212.1:ENST00000696214.1:ENST00000696213.1:ENST00000696215.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	124	2	2.40235	2.625175	2.848	0.00215274	3.2631e-4	0.0417866	0.0160737
chr3	185798166	185798266	1886080	0	-	0.45	(0.44,0.476]	chr3	188573	995	INTRON	INTRON	IGF2BP2	ENSG00000073792.16	ENST00000382199.7:ENST00000346192.7:ENST00000457616.6:ENST00000421047.3:ENST00000461957.5:ENST00000493302.5:ENST00000466476.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	119	2	1.64354	2.62511	3.60668	0.0157859	3.22849e-5	0.101453	0.00453487
chr2	87513420	87513520	826509	0	+	0.33	(0.32,0.35]	chr2	92446	37	INTRON	INTRON	CYTOR:ENSG00000284879	ENSG00000222041.12:ENSG00000284879.1	ENST00000642796.1:ENST00000643589.1:ENST00000642451.1:ENST00000646386.1:ENST00000644478.1:ENST00000409139.6:ENST00000331944.10:ENST00000644125.1:ENST00000643743.1:ENST00000644577.1:ENST00000643276.1:ENST00000409898.2:ENST00000419680.6:ENST00000644976.1:ENST00000643070.1:ENST00000646855.1:ENST00000414584.1:ENST00000455131.5:ENST00000646636.1:ENST00000642293.1:ENST00000423846.5:ENST00000644040.1:ENST00000645138.1:ENST00000437561.2:ENST00000629257.1:ENST00000645729.1:ENST00000413202.1	lncRNA	lncRNA	lncRNA	lncRNA	3	57	2	2.45306	2.625065	2.79707	0.0170923	0.00916394	0.104099	0.0855292
chr3	183983752	183983847	1882275	0	-	0.347368	(0.32,0.35]	chr3	188191	1	UTR3	UTR3:EXON_MRNA:INTRON	ABCC5	ENSG00000114770.17	ENST00000334444.11:ENST00000265586.10:ENST00000437205.5:ENST00000382494.6:ENST00000392579.6:ENST00000443376.5:ENST00000427120.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	57	2	2.45306	2.625065	2.79707	0.0170923	0.00916394	0.104099	0.0855292
chr22	41114289	41114389	7521711	0	+	0.48	(0.476,0.515]	chr22	768519	58	INTRON	INTRON	EP300	ENSG00000100393.14	ENST00000263253.9:ENST00000674155.1:ENST00000637592.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	49	2	2.48551	2.625055	2.7646	0.0162075	0.00756632	0.101453	0.0773151
chr1	28900906	28901005	58818	0	+	0.40404	(0.378,0.408]	chr1	7617	67	INTRON	INTRON	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000647918.1:ENST00000646800.1:ENST00000644342.1:ENST00000646189.1:ENST00000482464.6:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000646260.1:ENST00000373798.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	62	2	1.82258	2.6250400000000003	3.4275	0.0341279	0.00126053	0.135102	0.03295
chr20	32407400	32407500	7256317	0	+	0.39	(0.378,0.408]	chr20	737076	350	INTRON	INTRON	ASXL1	ENSG00000171456.21	ENST00000651418.1:ENST00000375687.10:ENST00000613218.4:ENST00000644587.1:ENST00000620121.4:ENST00000646985.1:ENST00000643168.1:ENST00000306058.9:ENST00000645688.1:ENST00000470145.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	62	2	1.82258	2.6250400000000003	3.4275	0.0341279	0.00126053	0.135102	0.03295
chr20	47340956	47341056	7349354	0	-	0.41	(0.408,0.44]	chr20	749346	220	INTRON	INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000435836.5:ENST00000446894.5:ENST00000441977.1	protein_coding	protein_coding	protein_coding	protein_coding	4	67	2	2.60048	2.6249599999999997	2.64944	0.00484324	0.00481947	0.0640618	0.060277
chr2	10161052	10161152	691114	0	+	0.52	(0.515,0.57]	chr2	81109	49	INTRON	INTRON	RRM2	ENSG00000171848.16	ENST00000641498.1:ENST00000381786.7	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	6	82	2	2.57697	2.624955	2.67294	0.00153959	0.00112534	0.0362709	0.0306963
chr9	37166530	37166630	4118120	0	+	0.15	[0,0.28]	chr9	375384	64	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000322831.6:ENST00000461038.5:ENST00000488607.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	140	2	2.4045	2.62495	2.8454	0.00723722	7.95824e-4	0.0729826	0.0258804
chr7	111201512	111201612	3620497	0	-	0.41	(0.408,0.44]	chr7	337093	2376	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	110	2	2.18269	2.624935	3.06718	0.0055386	1.33986e-4	0.0648867	0.00998237
chr19	5649763	5649844	7005572	0	+	0.345679	(0.32,0.35]	chr19	694984	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SAFB	ENSG00000160633.13	ENST00000589863.5:ENST00000588852.2:ENST00000292123.9:ENST00000592224.5:ENST00000586934.5:ENST00000454510.5:ENST00000592707.5:ENST00000592396.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	57	2	2.30476	2.62493	2.9451	0.0151817	0.011051	0.108535	0.0873897
chr11	68496160	68496260	4817687	0	+	0.36	(0.35,0.378]	chr11	448907	350	INTRON	INTRON	PPP6R3	ENSG00000110075.15	ENST00000530427.5:ENST00000528635.5:ENST00000529907.5:ENST00000533127.5:ENST00000534534.5:ENST00000529344.5:ENST00000524845.5:ENST00000393800.7:ENST00000265637.8:ENST00000524904.5:ENST00000393801.7:ENST00000265636.9:ENST00000529710.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	111	2	2.39463	2.624895	2.85516	0.00239229	0.00100103	0.0440612	0.0291511
chr9	130740654	130740754	4214131	0	+	0.47	(0.44,0.476]	chr9	386427	258	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000393293.4	protein_coding	protein_coding	protein_coding	protein_coding	12	184	2	2.49704	2.62481	2.75258	3.01519e-4	1.23052e-4	0.0160895	0.00949625
chr1	22098874	22098973	42681	0	+	0.515152	(0.476,0.515]	chr1	5130	75	UTR3	UTR3:EXON_MRNA	CDC42	ENSG00000070831.18	ENST00000656825.1	protein_coding	protein_coding	protein_coding	protein_coding	3	49	2	2.19809	2.6248050000000003	3.05152	0.020317	0.0064848	0.121522	0.0699952
chr2	131077803	131077902	1228935	0	-	0.464646	(0.44,0.476]	chr2	130987	55	INTRON	INTRON	FAM168B	ENSG00000152102.18	ENST00000389915.4:ENST00000409185.5	protein_coding	protein_coding	protein_coding	protein_coding	5	68	2	2.12136	2.624675	3.12799	0.00591413	0.0050635	0.0694038	0.0621733
chr5	53999412	53999512	2617798	0	-	0.5	(0.476,0.515]	chr5	248835	874	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	90	2	2.2792	2.6245000000000003	2.9698	0.00299196	0.00124841	0.0503888	0.0323336
chr20	32392123	32392223	7256164	0	+	0.52	(0.515,0.57]	chr20	737076	197	INTRON	INTRON	ASXL1	ENSG00000171456.21	ENST00000651418.1:ENST00000375687.10:ENST00000613218.4:ENST00000644587.1:ENST00000620121.4:ENST00000646985.1:ENST00000643168.1:ENST00000306058.9:ENST00000645688.1:ENST00000470145.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	58	2	1.84511	2.624495	3.40388	0.0167182	0.00142538	0.110511	0.0340865
chr12	113227464	113227563	5231587	0	+	0.414141	(0.408,0.44]	chr12	496113	1	INTRON	INTRON	TPCN1	ENSG00000186815.13	ENST00000552642.5:ENST00000547275.5:ENST00000552985.5:ENST00000550873.5:ENST00000551096.5:ENST00000551099.5:ENST00000552897.5:ENST00000550785.5:ENST00000335509.11:ENST00000549279.1:ENST00000552077.5:ENST00000541517.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	69	2	2.39162	2.624425	2.85723	0.0105837	0.00211413	0.0911864	0.0415897
chr15	87667177	87667277	6256226	0	-	0.46	(0.44,0.476]	chr15	596826	1238	INTRON	INTRON	ENSG00000259560	ENSG00000259560.2	ENST00000665121.1:ENST00000560439.1	lncRNA	lncRNA	lncRNA	lncRNA	6	94	2	1.92704	2.624425	3.32181	0.0128054	2.46145e-4	0.0990564	0.0144887
chr16	89445903	89446003	6543155	0	-	0.41	(0.408,0.44]	chr16	634281	142	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	69	2	2.39162	2.624425	2.85723	0.0105837	0.00211413	0.0911864	0.0415897
chr22	21599756	21599856	7482025	0	+	0.38	(0.378,0.408]	chr22	763238	64	INTRON	INTRON	UBE2L3	ENSG00000185651.16	ENST00000458578.6:ENST00000545681.2:ENST00000696046.1:ENST00000342192.9:ENST00000496722.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	124	2	2.15622	2.6243999999999996	3.09258	0.0013108	8.09686e-4	0.0333932	0.0263656
chr15	28939328	28939428	5990409	0	+	0.39	(0.378,0.408]	chr15	569580	172	INTRON	INTRON	APBA2	ENSG00000034053.15	ENST00000561069.5:ENST00000558402.5:ENST00000683413.1:ENST00000558330.5:ENST00000559814.5:ENST00000559709.5:ENST00000558804.5:ENST00000411764.5:ENST00000558259.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	39	2	2.45932	2.62439	2.78946	0.0346754	0.0158859	0.148144	0.101453
chr7	75512775	75512858	3558990	0	-	0.385542	(0.378,0.408]	chr7	331582	1	SS3_PROX	SS3_PROX:INTRON	PMS2P3	ENSG00000127957.19	ENST00000693762.1:ENST00000394921.8:ENST00000430602.5:ENST00000418756.5:ENST00000529061.7:ENST00000437568.6:ENST00000533167.5:ENST00000691440.1:ENST00000422064.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	2	39	2	2.45932	2.62439	2.78946	0.0346754	0.0158859	0.148144	0.101453
chr2	68223024	68223124	1146229	0	-	0.44	(0.408,0.44]	chr2	122396	55	INTRON	INTRON	PPP3R1	ENSG00000221823.11	ENST00000234310.8:ENST00000409752.5:ENST00000409377.1	protein_coding	protein_coding	protein_coding	protein_coding	2	39	2	2.2957	2.62433	2.95296	0.0516458	0.00929354	0.176696	0.0817766
chr3	125269125	125269225	1806038	0	-	0.47	(0.44,0.476]	chr3	181414	344	INTRON	INTRON	ZNF148	ENSG00000163848.20	ENST00000360647.9:ENST00000468369.5:ENST00000484491.5:ENST00000492394.5:ENST00000485866.5:ENST00000497929.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	59	2	2.22103	2.62427	3.02751	0.00776319	0.00715968	0.0787356	0.0723634
chr6	85508313	85508412	3150032	0	-	0.252525	[0,0.28]	chr6	293675	1	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	ENSG00000271793:SNX14	ENSG00000271793.2:ENSG00000135317.14	ENST00000682083.1:ENST00000683074.1:ENST00000681965.1:ENST00000682171.1:ENST00000684150.1:ENST00000683785.1:ENST00000682497.1:ENST00000684647.1:ENST00000683643.1:ENST00000682023.1:ENST00000682022.1:ENST00000683542.1:ENST00000683126.1:ENST00000683857.1:ENST00000683898.1:ENST00000682854.1:ENST00000682491.1:ENST00000682174.1:ENST00000684239.1:ENST00000682939.1:ENST00000684570.1:ENST00000682057.1:ENST00000682878.1:ENST00000683880.1:ENST00000684422.1:ENST00000682504.1:ENST00000683726.1:ENST00000684680.1:ENST00000683196.1:ENST00000683458.1:ENST00000683803.1:ENST00000684281.1:ENST00000682991.1:ENST00000683754.1:ENST00000683481.1:ENST00000682455.1:ENST00000682034.1:ENST00000684451.1:ENST00000683583.1:ENST00000682776.1:ENST00000683873.1:ENST00000683878.1:ENST00000683195.1:ENST00000682995.1:ENST00000682374.1:ENST00000683698.1:ENST00000682454.1:ENST00000682694.1:ENST00000682412.1:ENST00000514801.2:ENST00000682926.1:ENST00000682682.1:ENST00000418862.2:ENST00000346348.7:ENST00000314673.8:ENST00000682633.1:ENST00000683085.1:ENST00000682688.1:ENST00000684319.1:ENST00000683577.1:ENST00000682709.1:ENST00000684299.1:ENST00000682133.1:ENST00000682594.1:ENST00000683473.1:ENST00000682106.1:ENST00000683364.1:ENST00000683436.1:ENST00000684220.1:ENST00000683909.1:ENST00000684118.1:ENST00000681981.1:ENST00000682738.1:ENST00000509338.6:ENST00000684717.1:ENST00000682660.1:ENST00000683073.1:ENST00000515216.6:ENST00000684581.1:ENST00000683763.1:ENST00000683479.1:ENST00000682464.1:ENST00000684108.1:ENST00000682514.1:ENST00000684017.1:ENST00000684273.1:ENST00000513865.5:ENST00000505648.5:ENST00000474645.6:ENST00000508980.5:ENST00000369627.6:ENST00000503491.5:ENST00000508658.6:ENST00000683097.1:ENST00000683541.1:ENST00000683759.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	96	2	2.39991	2.624255	2.8486	0.0163416	0.00254189	0.101571	0.0465056
chr20	62936195	62936295	7362553	0	-	0.49	(0.476,0.515]	chr20	751216	70	INTRON	INTRON	DIDO1	ENSG00000101191.17	ENST00000266070.8:ENST00000370371.8	protein_coding	protein_coding	protein_coding	protein_coding	21	318	2	2.59785	2.6240750000000004	2.6503	3.89352e-5	3.24928e-5	0.00533644	0.00454715
chr2	26049178	26049278	713250	0	+	0.37	(0.35,0.378]	chr2	82440	65	INTRON	INTRON	RAB10	ENSG00000084733.11	ENST00000264710.5:ENST00000495146.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	72	2	2.48623	2.624075	2.76192	0.00938784	0.00265021	0.0817766	0.0474328
chr1	89828535	89828634	159598	0	+	0.363636	(0.35,0.378]	chr1	17270	60	INTRON	INTRON	LRRC8D	ENSG00000171492.14	ENST00000525774.5:ENST00000337338.9:ENST00000394593.7	protein_coding	protein_coding	protein_coding	protein_coding	8	120	2	2.09944	2.6240699999999997	3.1487	0.00266508	6.87038e-4	0.0476626	0.024008
chr22	19114042	19114141	7551931	0	-	0.353535	(0.35,0.378]	chr22	771903	242	INTRON	INTRON	DGCR2	ENSG00000070413.20	ENST00000537045.5:ENST00000545799.5:ENST00000263196.12:ENST00000389262.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	105	2	2.26428	2.62406	2.98384	0.00831504	2.41007e-4	0.0774402	0.0136674
chr7	12399166	12399266	3485394	0	-	0.34	(0.32,0.35]	chr7	325970	50	INTRON	INTRON	VWDE	ENSG00000146530.15	ENST00000275358.8:ENST00000452576.6:ENST00000521169.5:ENST00000326715.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	80	2	1.63843	2.6240550000000002	3.60968	0.0360919	0.00105196	0.152563	0.029592
chr7	99473156	99473256	3362051	0	+	0.54	(0.515,0.57]	chr7	314023	1	SS5_PROX	SS5_PROX:INTRON	ZNF789	ENSG00000198556.14	ENST00000331410.10:ENST00000448667.5:ENST00000481472.5:ENST00000483089.5:ENST00000488485.5:ENST00000493485.5:ENST00000447047.6:ENST00000379724.3:ENST00000465438.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	68	2	2.36534	2.6240050000000004	2.88267	0.00404547	0.00152842	0.0578376	0.0353936
chr17	8378500	8378592	6720361	0	-	0.347826	(0.32,0.35]	chr17	659438	4	INTRON	INTRON	RPL26	ENSG00000161970.15	ENST00000648839.1:ENST00000584164.6:ENST00000584906.6:ENST00000583011.6:ENST00000578069.1:ENST00000584441.5:ENST00000582485.5:ENST00000582556.5:ENST00000585176.1:ENST00000584343.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	80	2	1.70947	2.624005	3.53854	0.0328375	9.09596e-4	0.133816	0.0277043
chr21	6325973	6326073	7364833	0	+	0.34	(0.32,0.35]	chr21	751664	15	INTRON	INTRON	ENSG00000278903	ENSG00000278903.4	ENST00000688458.1:ENST00000689306.1:ENST00000692898.1:ENST00000624576.3:ENST00000623738.3:ENST00000692237.1:ENST00000692046.1:ENST00000689354.1:ENST00000624165.1	lncRNA	lncRNA	lncRNA	lncRNA	5	80	2	1.70947	2.624005	3.53854	0.0328375	9.09596e-4	0.133816	0.0277043
chr7	73517136	73517236	3555049	0	-	0.48	(0.476,0.515]	chr7	330813	59	INTRON	INTRON	BAZ1B	ENSG00000009954.11	ENST00000339594.9:ENST00000404251.1	protein_coding	protein_coding	protein_coding	protein_coding	11	167	2	2.31315	2.6239850000000002	2.93482	0.00112683	4.07159e-5	0.030721	0.00518785
chr1	15622188	15622287	33525	0	+	0.474747	(0.44,0.476]	chr1	4078	40	INTRON	INTRON	DDI2	ENSG00000197312.12	ENST00000480945.6:ENST00000486680.1:ENST00000546927.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	49	2	2.44514	2.623945	2.80275	0.0146513	0.0087381	0.0982604	0.0845538
chr10	17444666	17444766	4568919	0	-	0.45	(0.44,0.476]	chr10	421387	537	INTRON	INTRON	ST8SIA6	ENSG00000148488.17	ENST00000377602.5:ENST00000648997.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	49	2	2.44514	2.623945	2.80275	0.0146513	0.0087381	0.0982604	0.0845538
chr5	141572720	141572810	2739699	0	-	0.455556	(0.44,0.476]	chr5	258083	3	INTRON	INTRON	DIAPH1	ENSG00000131504.18	ENST00000647433.1:ENST00000389054.8:ENST00000518047.5	protein_coding	protein_coding	protein_coding	protein_coding	3	49	2	2.44514	2.623945	2.80275	0.0146513	0.0087381	0.0982604	0.0845538
chr1	1737290	1737389	361349	0	-	0.474747	(0.44,0.476]	chr1	42123	22	EXON_LNCRNA	EXON_LNCRNA:INTRON	ENSG00000268575:SLC35E2A	ENSG00000268575.1:ENSG00000215790.8	ENST00000598846.1:ENST00000647043.1:ENST00000246421.4:ENST00000643943.1	lncRNA	lncRNA	lncRNA:transcribed_unprocessed_pseudogene	lncRNA:processed_transcript:transcribed_unprocessed_pseudogene	7	109	2	2.20714	2.623935	3.04073	0.00493236	1.55969e-4	0.061186	0.0106835
chr1	32835249	32835346	66746	0	+	0.278351	[0,0.28]	chr1	8568	5	EXON_LNCRNA	EXON_LNCRNA:INTRON	S100PBP	ENSG00000116497.18	ENST00000373476.5:ENST00000531123.5:ENST00000356689.7:ENST00000373475.10	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	85	2	2.06426	2.62392	3.18358	0.0168952	0.00694532	0.110899	0.0718189
chr16	24771639	24771739	6329635	0	+	0.51	(0.476,0.515]	chr16	605945	129	INTRON	INTRON	TNRC6A	ENSG00000090905.19	ENST00000395799.8:ENST00000315183.11:ENST00000562829.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	67	2	1.91368	2.62392	3.33416	0.0135123	0.00230489	0.101363	0.0428247
chr20	6022681	6022780	7230716	0	+	0.272727	[0,0.28]	chr20	734840	68	INTRON	INTRON	CRLS1	ENSG00000088766.12	ENST00000452938.5:ENST00000378863.9:ENST00000378868.4:ENST00000489345.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	85	2	2.06426	2.62392	3.18358	0.0168952	0.00694532	0.110899	0.0718189
chr1	47260639	47260739	445558	0	-	0.51	(0.476,0.515]	chr1	53988	1	SS3_PROX	SS3_PROX:INTRON	STIL	ENSG00000123473.17	ENST00000360380.7:ENST00000371877.8:ENST00000337817.10:ENST00000682940.1:ENST00000683977.1:ENST00000682977.1:ENST00000396221.6:ENST00000684618.1:ENST00000447475.7:ENST00000418131.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	67	2	1.87147	2.623895	3.37632	0.0157856	0.00195267	0.109464	0.0400465
chr21	33524197	33524291	7441202	0	-	0.382979	(0.378,0.408]	chr21	759442	3	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	GART	ENSG00000159131.17	ENST00000381839.7:ENST00000381831.7:ENST00000424203.5:ENST00000381815.9:ENST00000460305.1:ENST00000467575.1:ENST00000361093.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	15	240	2	2.59558	2.6238900000000003	2.6522	1.43014e-4	7.56653e-5	0.0109429	0.00729843
chr12	64611337	64611437	5155005	0	+	0.46	(0.44,0.476]	chr12	488091	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	RASSF3	ENSG00000153179.13	ENST00000637125.1:ENST00000542104.6:ENST00000283172.8:ENST00000336061.2:ENST00000540088.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	49	2	2.27304	2.623775	2.97451	0.0158915	0.00853825	0.109464	0.0780043
chr17	66433509	66433609	6663607	0	+	0.45	(0.44,0.476]	chr17	650326	693	INTRON	INTRON	PRKCA	ENSG00000154229.12	ENST00000413366.8:ENST00000578063.5:ENST00000284384.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	49	2	2.27304	2.623775	2.97451	0.0158915	0.00853825	0.109464	0.0780043
chr4	151003510	151003610	2271654	0	-	0.45	(0.44,0.476]	chr4	220921	741	INTRON	INTRON	LRBA	ENSG00000198589.14	ENST00000357115.9:ENST00000651943.2:ENST00000510413.5:ENST00000651035.1:ENST00000507224.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	49	2	2.27304	2.623775	2.97451	0.0158915	0.00853825	0.109464	0.0780043
chr5	71533616	71533714	2384380	0	+	0.44898	(0.44,0.476]	chr5	229998	8	INTRON	INTRON	BDP1	ENSG00000145734.20	ENST00000358731.9:ENST00000508917.6:ENST00000514903.7:ENST00000525844.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	49	2	2.27304	2.623775	2.97451	0.0158915	0.00853825	0.109464	0.0780043
chr3	43702311	43702408	1410293	0	+	0.474227	(0.44,0.476]	chr3	147932	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	ABHD5	ENSG00000011198.10	ENST00000643520.1:ENST00000456453.5:ENST00000458276.7:ENST00000649763.1:ENST00000643140.1:ENST00000643500.1:ENST00000644371.2:ENST00000013894.3:ENST00000646378.1:ENST00000643477.1:ENST00000646799.1:ENST00000454293.2:ENST00000642351.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	14	215	2	1.95506	2.62364	3.29222	0.00340969	1.58275e-6	0.0517761	7.57532e-4
chr3	17692801	17692901	1629934	0	-	0.4	(0.378,0.408]	chr3	168267	203	INTRON	INTRON	TBC1D5	ENSG00000131374.15	ENST00000253692.11:ENST00000696125.1:ENST00000414318.2:ENST00000429383.8:ENST00000446818.6:ENST00000415814.6:ENST00000452492.6:ENST00000412981.5:ENST00000428355.5:ENST00000425944.5:ENST00000430169.5:ENST00000445294.5:ENST00000414349.5:ENST00000443499.6:ENST00000444756.5:ENST00000497531.5:ENST00000443386.5:ENST00000507877.5:ENST00000446863.5:ENST00000444471.5:ENST00000433533.5:ENST00000481396.5:ENST00000480435.5:ENST00000423331.6:ENST00000485432.1:ENST00000471679.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	38	2	2.38873	2.623635	2.85854	0.0458857	0.0107837	0.149888	0.0920575
chr5	131527608	131527708	2718089	0	-	0.38	(0.378,0.408]	chr5	255585	57	INTRON	INTRON	RAPGEF6	ENSG00000158987.22	ENST00000509018.6:ENST00000507093.5:ENST00000296859.10:ENST00000627212.2:ENST00000308008.10:ENST00000515170.5:ENST00000510071.5:ENST00000514179.5:ENST00000513227.5:ENST00000504575.5:ENST00000504039.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	38	2	2.38873	2.623635	2.85854	0.0458857	0.0107837	0.149888	0.0920575
chr1	229557735	229557835	653764	0	-	0.32	(0.28,0.32]	chr1	77489	2	SS5_PROX	SS5_PROX:INTRON	ABCB10	ENSG00000135776.5	ENST00000344517.5	protein_coding	protein_coding	protein_coding	protein_coding	2	46	2	2.32871	2.6235150000000003	2.91832	0.0581621	0.0102484	0.167723	0.089002
chr2	113752666	113752766	1216787	0	-	0.32	(0.28,0.32]	chr2	129536	17	INTRON	INTRON	SLC35F5	ENSG00000115084.15	ENST00000245680.7:ENST00000409106.5:ENST00000409342.1:ENST00000498768.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	46	2	2.32871	2.6235150000000003	2.91832	0.0581621	0.0102484	0.167723	0.089002
chr1	10047869	10047969	19275	0	+	0.39	(0.378,0.408]	chr1	1838	138	INTRON	INTRON	UBE4B	ENSG00000130939.20	ENST00000672724.1:ENST00000253251.12:ENST00000343090.11:ENST00000377153.5	protein_coding	protein_coding	protein_coding	protein_coding	2	38	2	2.53503	2.62343	2.71183	0.0319942	0.0170789	0.13174	0.110899
chr16	84752641	84752741	6410440	0	+	0.4	(0.378,0.408]	chr16	615303	66	INTRON	INTRON	USP10	ENSG00000103194.16	ENST00000540269.6:ENST00000563892.5:ENST00000219473.12:ENST00000570191.5:ENST00000563048.5:ENST00000569038.5:ENST00000570053.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	38	2	2.53503	2.62343	2.71183	0.0319942	0.0170789	0.13174	0.110899
chr17	46337660	46337757	6785846	0	-	0.587629	(0.57,1]	chr17	669307	4	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	ARL17B	ENSG00000228696.10	ENST00000570618.5:ENST00000656849.1:ENST00000434041.6:ENST00000572991.5:ENST00000622877.4:ENST00000575698.5:ENST00000575960.5:ENST00000571246.5:ENST00000450673.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	45	2	1.89351	2.623395	3.35328	0.0255126	8.52328e-5	0.133676	0.00825602
chr1	77629549	77629649	492926	0	-	0.51	(0.476,0.515]	chr1	58292	445	INTRON	INTRON	ZZZ3	ENSG00000036549.13	ENST00000370801.8:ENST00000481346.5:ENST00000476275.5:ENST00000370798.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	100	2	2.10246	2.6232800000000003	3.1441	0.00381269	5.63876e-4	0.0562562	0.0219303
chr7	152234816	152234916	3679256	0	-	0.41	(0.408,0.44]	chr7	341561	41	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000683200.1:ENST00000682283.1:ENST00000473186.5:ENST00000679882.1:ENST00000680969.1:ENST00000681033.1:ENST00000679645.1:ENST00000684550.1:ENST00000489110.2:ENST00000681838.1:ENST00000683490.1:ENST00000418673.2:ENST00000684140.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	91	2	2.35743	2.6232800000000003	2.88913	0.00206746	0.00185044	0.0421756	0.0388609
chr13	50194048	50194148	5492104	0	+	0.29	(0.28,0.32]	chr13	526049	76	INTRON	INTRON	DLEU1	ENSG00000176124.15	ENST00000467721.5:ENST00000468522.5:ENST00000490577.5:ENST00000491341.5:ENST00000491615.5:ENST00000463474.7:ENST00000468168.5:ENST00000476738.5:ENST00000461527.7:ENST00000486895.5:ENST00000485007.5:ENST00000475913.5:ENST00000484529.5	lncRNA	lncRNA	lncRNA	lncRNA	2	46	2	2.57195	2.62324	2.67453	0.0331711	0.021289	0.133994	0.123318
chr14	74003723	74003822	5921518	0	-	0.313131	(0.28,0.32]	chr14	562471	66	INTRON	INTRON	ENTPD5	ENSG00000187097.13	ENST00000557325.5:ENST00000334696.11:ENST00000556242.5:ENST00000554664.5:ENST00000556108.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	46	2	2.57195	2.62324	2.67453	0.0331711	0.021289	0.133994	0.123318
chr9	131192482	131192577	4216320	0	+	0.294737	(0.28,0.32]	chr9	386652	3	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	NUP214	ENSG00000126883.19	ENST00000695497.1:ENST00000695498.1:ENST00000695496.1:ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000525980.5:ENST00000531929.5:ENST00000651334.1:ENST00000524578.6:ENST00000453861.6:ENST00000470765.5:ENST00000483497.6:ENST00000465486.6:ENST00000531600.1:ENST00000528114.1:ENST00000525384.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	152	2	2.12264	2.623195	3.12375	0.00204681	0.00104535	0.0419389	0.0294493
chr1	183526095	183526195	274056	0	+	0.28	[0,0.28]	chr1	32060	1	SS3_PROX	SS3_PROX:INTRON	SMG7	ENSG00000116698.22	ENST00000440812.7:ENST00000367537.7:ENST00000688051.1:ENST00000685780.1:ENST00000508461.5:ENST00000347615.6:ENST00000419169.5:ENST00000444547.6:ENST00000507469.5:ENST00000515829.6:ENST00000507406.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	52	2	2.44242	2.62319	2.80396	0.0491024	0.0161429	0.155269	0.109464
chr2	170929663	170929740	916394	0	+	0.61039	(0.57,1]	chr2	100858	4	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GORASP2	ENSG00000115806.13	ENST00000471559.5:ENST00000444801.5:ENST00000234160.5:ENST00000493692.5:ENST00000497674.5:ENST00000455067.5:ENST00000454751.5:ENST00000442798.5:ENST00000497928.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	54	2	1.80424	2.623085	3.44193	0.0129439	4.86135e-5	0.0991015	0.00605189
chr22	23225331	23225430	7483655	0	+	0.606061	(0.57,1]	chr22	763541	256	INTRON	INTRON	BCR	ENSG00000186716.21	ENST00000479188.5:ENST00000359540.7:ENST00000305877.13:ENST00000463770.5:ENST00000487679.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	32	2	1.92756	2.623075	3.31859	0.0220439	0.00137292	0.115395	0.0340241
chr6	87243274	87243374	2914144	0	+	0.29	(0.28,0.32]	chr6	275318	4	SS3_PROX	SS3_PROX:INTRON	ZNF292	ENSG00000188994.13	ENST00000369577.8:ENST00000518845.1:ENST00000339907.8:ENST00000496806.2:ENST00000466062.2	protein_coding	protein_coding	protein_coding	protein_coding	9	121	2	1.1967	2.622985	4.04927	0.061138	2.00347e-4	0.193423	0.0129814
chr7	129636162	129636261	3412368	0	+	0.333333	(0.32,0.35]	chr7	319019	25	INTRON	INTRON	NRF1	ENSG00000106459.15	ENST00000393232.6:ENST00000454688.5:ENST00000223190.8:ENST00000311967.6:ENST00000393230.6:ENST00000353868.5	protein_coding	protein_coding	protein_coding	protein_coding	4	69	2	1.93031	2.62282	3.31533	0.0231421	0.00323121	0.126939	0.0507087
chrX	13313640	13313740	7622186	0	+	0.31	(0.28,0.32]	chrX	780270	3	SS5_PROX	SS5_PROX:INTRON	GS1-600G8.3	ENSG00000231216.1	ENST00000431486.1	lncRNA	lncRNA	lncRNA	lncRNA	28	539	2	2.59411	2.622815	2.65152	1.09316e-4	1.77247e-5	0.00941027	0.00320912
chr2	10152429	10152529	691027	0	+	0.25	[0,0.28]	chr2	81105	64	INTRON	INTRON	RRM2	ENSG00000171848.16	ENST00000641498.1:ENST00000646978.1:ENST00000381786.7	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	3	72	2	2.24053	2.622755	3.00498	0.0256186	0.00876063	0.120376	0.0846118
chr1	110896552	110896652	183681	0	+	0.42	(0.408,0.44]	chr1	20385	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	CD53	ENSG00000143119.14	ENST00000648608.1:ENST00000271324.6:ENST00000476408.1:ENST00000497404.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	92	2	2.15507	2.62272	3.09037	0.00618525	5.47766e-4	0.0677395	0.0212924
chr1	234475788	234475887	661402	0	-	0.494949	(0.476,0.515]	chr1	78262	26	INTRON	INTRON	TARBP1	ENSG00000059588.10	ENST00000040877.2	protein_coding	protein_coding	protein_coding	protein_coding	5	67	2	1.95469	2.622715	3.29074	0.0115753	0.00272563	0.0962115	0.0467523
chr10	16744044	16744144	4566712	0	-	0.48	(0.476,0.515]	chr10	421284	165	INTRON	INTRON	RSU1	ENSG00000148484.18	ENST00000345264.10:ENST00000377921.7:ENST00000602389.1:ENST00000464074.6:ENST00000377911.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	37	2	2.23335	2.6226599999999998	3.01197	0.0634557	0.00633162	0.177047	0.0722266
chr2	121485292	121485391	1220736	0	-	0.484848	(0.476,0.515]	chr2	129995	150	INTRON	INTRON	CLASP1	ENSG00000074054.20	ENST00000263710.8:ENST00000397587.7:ENST00000541377.5:ENST00000409078.8:ENST00000455322.6:ENST00000452274.6:ENST00000430234.5:ENST00000418989.5:ENST00000449975.1:ENST00000474065.5:ENST00000480007.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	37	2	2.23335	2.6226599999999998	3.01197	0.0634557	0.00633162	0.177047	0.0722266
chr9	96392836	96392936	4295114	0	-	0.49	(0.476,0.515]	chr9	394957	3	SS3_PROX	SS3_PROX:INTRON	ZNF367	ENSG00000165244.7	ENST00000375256.5	protein_coding	protein_coding	protein_coding	protein_coding	2	37	2	2.23335	2.6226599999999998	3.01197	0.0634557	0.00633162	0.177047	0.0722266
chr6	27853325	27853424	2839171	0	+	0.414141	(0.408,0.44]	chr6	266461	13	UTR3	UTR3:EXON_MRNA	H2BC15	ENSG00000233822.6	ENST00000606613.1	protein_coding	protein_coding	protein_coding	protein_coding	7	116	2	2.5027	2.62261	2.74252	0.00238178	4.34321e-4	0.0449397	0.019116
chr1	52087549	52087648	101575	0	+	0.373737	(0.35,0.378]	chr1	13457	9	UTR3	UTR3:EXON_MRNA	BTF3L4	ENSG00000134717.18	ENST00000313334.13:ENST00000472944.6	protein_coding	protein_coding	protein_coding	protein_coding	4	72	2	2.36677	2.62256	2.87835	0.0139343	0.00160563	0.0957526	0.0367961
chr6	13691090	13691190	3059018	0	-	0.44	(0.408,0.44]	chr6	284542	319	INTRON	INTRON	RANBP9	ENSG00000010017.13	ENST00000011619.6	protein_coding	protein_coding	protein_coding	protein_coding	6	94	2	2.53313	2.62251	2.71189	0.00739595	3.3885e-4	0.074277	0.0163824
chr7	121136490	121136590	3395130	0	+	0.23	[0,0.28]	chr7	317764	4	SS5_PROX	SS5_PROX:INTRON	CPED1	ENSG00000106034.18	ENST00000310396.10:ENST00000450913.6:ENST00000423795.5	protein_coding	protein_coding	protein_coding	protein_coding	3	71	2	2.02265	2.622475	3.2223	0.0449017	0.00422777	0.149888	0.0595466
chr19	15328235	15328335	7147363	0	-	0.24	[0,0.28]	chr19	721965	479	INTRON	INTRON	BRD4	ENSG00000141867.19	ENST00000679869.1:ENST00000360016.9:ENST00000594841.5:ENST00000597315.5:ENST00000601941.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	85	2	2.19624	2.622455	3.04867	0.0108335	0.0104221	0.0920781	0.085482
chr3	160428552	160428652	1544911	0	+	0.28	[0,0.28]	chr3	160762	4	SS3_PROX	SS3_PROX:INTRON	SMC4	ENSG00000113810.16	ENST00000357388.8:ENST00000469762.5:ENST00000462787.5:ENST00000344722.5:ENST00000462668.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	85	2	2.02929	2.62236	3.21543	0.0189138	0.00629013	0.118303	0.0687434
chr6	33300578	33300676	3082676	0	-	0.581633	(0.57,1]	chr6	288364	10	UTR3	UTR3:EXON_MRNA	TAPBP	ENSG00000231925.13	ENST00000434618.7	protein_coding	protein_coding	protein_coding	protein_coding	17	138	2	1.91605	2.62235	3.32865	0.00141109	1.19396e-7	0.0345101	1.64734e-4
chr22	47860918	47861018	7541676	0	+	0.53	(0.515,0.57]	chr22	770793	1	SS5_PROX	SS5_PROX:INTRON	ENSG00000224271	ENSG00000224271.7	ENST00000664761.1:ENST00000650683.1:ENST00000651536.1:ENST00000651445.1:ENST00000650660.1:ENST00000651056.1:ENST00000652399.1:ENST00000652123.1:ENST00000652030.2:ENST00000651403.1:ENST00000652228.1:ENST00000651124.1:ENST00000651003.1:ENST00000651948.2:ENST00000651293.1:ENST00000651939.1:ENST00000651638.1:ENST00000670853.1:ENST00000652080.1:ENST00000651294.1:ENST00000651538.1:ENST00000651033.1:ENST00000651584.1:ENST00000449941.2	lncRNA	lncRNA	lncRNA	lncRNA	3	45	2	2.58624	2.62229	2.65834	0.0187418	0.00526399	0.117523	0.0633874
chr3	100264618	100264716	1465602	0	+	0.306122	(0.28,0.32]	chr3	153589	27	INTRON	INTRON	TBC1D23	ENSG00000036054.13	ENST00000394144.9:ENST00000485687.5:ENST00000344949.9:ENST00000486274.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	62	2	2.24061	2.62228	3.00395	0.0194267	0.0101329	0.119831	0.0850389
chr2	201011091	201011191	1311281	0	-	0.42	(0.408,0.44]	chr2	137265	3	SS5_PROX	SS5_PROX:INTRON	FAM126B	ENSG00000155744.10	ENST00000681958.1:ENST00000418596.7:ENST00000286181.7:ENST00000498780.5:ENST00000452799.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	50	2	1.88062	2.6222000000000003	3.36378	0.0534548	0.0016048	0.162935	0.0367961
chr20	43689165	43689265	7276280	0	+	0.42	(0.408,0.44]	chr20	739741	17	INTRON	INTRON	MYBL2	ENSG00000101057.16	ENST00000396863.8:ENST00000217026.5	protein_coding	protein_coding	protein_coding	protein_coding	3	50	2	1.88062	2.6222000000000003	3.36378	0.0534548	0.0016048	0.162935	0.0367961
chr3	37310024	37310124	1396432	0	+	0.36	(0.35,0.378]	chr3	146385	73	INTRON	INTRON	GOLGA4	ENSG00000144674.17	ENST00000435830.6:ENST00000444882.5:ENST00000356847.8:ENST00000450863.6:ENST00000361924.7:ENST00000429018.5:ENST00000437131.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	64	2	2.11531	2.62218	3.12905	0.0119629	0.00566312	0.0962115	0.0653997
chr1	163334663	163334762	239661	0	+	0.545455	(0.515,0.57]	chr1	28870	54	INTRON	INTRON	NUF2	ENSG00000143228.13	ENST00000534289.5:ENST00000450453.6:ENST00000524800.5:ENST00000367900.7:ENST00000442820.5:ENST00000271452.8:ENST00000490881.5:ENST00000497990.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	117	2	2.54372	2.62216	2.7006	0.00205444	6.91222e-5	0.0409693	0.00689062
chr21	44053265	44053362	7415444	0	+	0.257732	[0,0.28]	chr21	755801	4	INTRON	INTRON	TRAPPC10	ENSG00000160218.13	ENST00000291574.9:ENST00000380221.7:ENST00000422875.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	52	2	2.49527	2.62214	2.74901	0.0436497	0.0188843	0.14882	0.118148
chr22	19055095	19055195	7551329	0	-	0.28	[0,0.28]	chr22	771857	61	INTRON	INTRON	DGCR2	ENSG00000070413.20	ENST00000537045.5:ENST00000545799.5:ENST00000263196.12:ENST00000389262.8:ENST00000467659.1:ENST00000608548.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	52	2	2.49527	2.62214	2.74901	0.0436497	0.0188843	0.14882	0.118148
chr8	90358266	90358366	3793678	0	+	0.27	[0,0.28]	chr8	351792	62	INTRON	INTRON	LINC00534	ENSG00000253394.7	ENST00000662145.1:ENST00000655523.1:ENST00000517400.6:ENST00000658299.1:ENST00000663329.1:ENST00000658342.1:ENST00000523283.6:ENST00000655219.1:ENST00000662692.1:ENST00000667296.1:ENST00000667565.1:ENST00000523406.2:ENST00000659030.1:ENST00000653734.1:ENST00000654785.1:ENST00000524361.5:ENST00000668745.1:ENST00000661519.1:ENST00000671657.1:ENST00000655123.1:ENST00000663098.1:ENST00000670903.1:ENST00000654946.1	lncRNA	lncRNA	lncRNA	lncRNA	2	52	2	2.49527	2.62214	2.74901	0.0436497	0.0188843	0.14882	0.118148
chr19	28475075	28475175	7165845	0	-	0.53	(0.515,0.57]	chr19	724189	68	INTRON	INTRON	ENSG00000283403:ENSG00000267243	ENSG00000283403.1:ENSG00000267243.6	ENST00000592347.5:ENST00000593065.5	lncRNA	lncRNA	lncRNA	lncRNA	4	52	2	1.7492	2.62208	3.49496	0.0382504	9.61701e-4	0.15832	0.0282401
chr1	39144178	39144277	75278	0	+	0.515152	(0.476,0.515]	chr1	9693	381	INTRON	INTRON	MACF1	ENSG00000127603.32	ENST00000361689.7:ENST00000689911.1:ENST00000567887.5:ENST00000372915.8:ENST00000472385.2:ENST00000693209.1:ENST00000524432.5:ENST00000467673.5:ENST00000688212.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	37	2	2.47949	2.622045	2.7646	0.0326974	0.0162075	0.145164	0.101453
chr16	29608815	29608915	6471689	0	-	0.5	(0.476,0.515]	chr16	625301	140	INTRON	INTRON	ENSG00000288632	ENSG00000288632.1	ENST00000675579.1	lncRNA	lncRNA	lncRNA	lncRNA	2	37	2	2.47949	2.622045	2.7646	0.0326974	0.0162075	0.145164	0.101453
chr20	31687484	31687584	7325018	0	-	0.5	(0.476,0.515]	chr20	745996	25	INTRON	INTRON	BCL2L1	ENSG00000171552.14	ENST00000376055.9:ENST00000376062.6:ENST00000307677.5:ENST00000420488.6:ENST00000439267.2:ENST00000678563.1:ENST00000456404.6:ENST00000676942.1:ENST00000676582.1:ENST00000434194.2:ENST00000677194.1:ENST00000678671.1:ENST00000677494.1:ENST00000422920.2:ENST00000450273.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	37	2	2.47949	2.622045	2.7646	0.0326974	0.0162075	0.145164	0.101453
chr7	5400373	5400473	3471848	0	-	0.51	(0.476,0.515]	chr7	324674	54	INTRON	INTRON	TNRC18	ENSG00000182095.15	ENST00000399537.8:ENST00000430969.6:ENST00000434361.5:ENST00000399434.2	protein_coding	protein_coding	protein_coding	protein_coding	2	37	2	2.47949	2.622045	2.7646	0.0326974	0.0162075	0.145164	0.101453
chr21	14510109	14510209	7427837	0	-	0.39	(0.378,0.408]	chr21	757739	4	SS5_PROX	SS5_PROX:INTRON	SAMSN1	ENSG00000155307.19	ENST00000647101.1:ENST00000644288.1:ENST00000400564.5:ENST00000400566.6:ENST00000285670.7:ENST00000619120.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	99	2	2.42594	2.622	2.81806	0.00428028	5.36236e-4	0.0574861	0.0209287
chr7	72918905	72919004	3330188	0	+	0.525253	(0.515,0.57]	chr7	309571	47	INTRON	INTRON	POM121	ENSG00000196313.13	ENST00000627934.3:ENST00000395270.5	protein_coding	protein_coding	protein_coding	protein_coding	5	58	2	1.79385	2.621995	3.45014	0.0201222	0.00116948	0.121243	0.0312127
chr18	173508	173608	6854977	0	+	0.44	(0.408,0.44]	chr18	679508	63	INTRON	INTRON	USP14	ENSG00000101557.15	ENST00000582707.5:ENST00000400266.7:ENST00000261601.8:ENST00000578942.5:ENST00000383589.6:ENST00000583119.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	60	2	1.69172	2.621935	3.55215	0.0486032	7.01039e-4	0.153946	0.0241881
chr11	125670931	125671031	4883450	0	+	0.44	(0.408,0.44]	chr11	456613	139	INTRON	INTRON	CHEK1	ENSG00000149554.14	ENST00000428830.6:ENST00000524737.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	50	2	2.21857	2.6218500000000002	3.02513	0.0209591	0.0059965	0.112046	0.0700606
chr16	75341001	75341101	6528363	0	-	0.44	(0.408,0.44]	chr16	632300	346	INTRON	INTRON	CFDP1	ENSG00000153774.9	ENST00000283882.4:ENST00000564793.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	50	2	2.21857	2.6218500000000002	3.02513	0.0209591	0.0059965	0.112046	0.0700606
chr1	92641632	92641732	506719	0	-	0.37	(0.35,0.378]	chr1	59811	49	INTRON	INTRON	EVI5	ENSG00000067208.16	ENST00000370331.5:ENST00000540033.2:ENST00000684568.2:ENST00000491940.5:ENST00000468580.5:ENST00000492613.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	42	2	2.30249	2.6218000000000004	2.94111	0.0519726	0.0104563	0.176696	0.0855102
chr11	34460433	34460533	4768877	0	+	0.43	(0.408,0.44]	chr11	441257	22	INTRON	INTRON	CAT	ENSG00000121691.7	ENST00000241052.5:ENST00000650153.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	145	2	2.04345	2.6217699999999997	3.20009	9.94236e-4	4.59843e-4	0.0290397	0.01978
chr13	79386405	79386505	5626211	0	-	0.29	(0.28,0.32]	chr13	536667	71	INTRON	INTRON	RBM26	ENSG00000139746.16	ENST00000438737.3:ENST00000438724.5:ENST00000622611.4:ENST00000267229.11:ENST00000472143.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	63	2	2.57195	2.62174	2.67153	0.0331711	0.00436402	0.133994	0.060356
chr4	126438039	126438139	2235085	0	-	0.33	(0.32,0.35]	chr4	219005	27	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1:ENST00000651327.1	lncRNA	lncRNA	lncRNA	lncRNA	3	57	2	2.49929	2.62172	2.74415	0.0198267	0.00776612	0.109608	0.0787356
chr7	157239996	157240096	3454974	0	+	0.47	(0.44,0.476]	chr7	323002	83	INTRON	INTRON	UBE3C	ENSG00000009335.18	ENST00000348165.10:ENST00000470408.5:ENST00000494532.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	66	2	2.59632	2.621505	2.64669	0.00579248	0.0040295	0.0662959	0.0578376
chr9	131150957	131151050	4215887	0	+	0.376344	(0.35,0.378]	chr9	386584	2	SS5_PROX	SS5_PROX:INTRON	NUP214	ENSG00000126883.19	ENST00000695497.1:ENST00000695498.1:ENST00000695496.1:ENST00000695495.1:ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000651022.1:ENST00000525980.5:ENST00000530630.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	64	2	2.07049	2.6214649999999997	3.17244	0.0140397	0.00487788	0.102801	0.0607461
chr10	5436320	5436420	4384098	0	+	0.5	(0.476,0.515]	chr10	404406	67	INTRON	INTRON	NET1	ENSG00000173848.19	ENST00000355029.9	protein_coding	protein_coding	protein_coding	protein_coding	3	49	2	2.05154	2.621365	3.19119	0.0336015	0.00325748	0.134145	0.0524329
chr5	90693389	90693489	2421778	0	+	0.24	[0,0.28]	chr5	232954	1	SS3_PROX	SS3_PROX:INTRON	ADGRV1	ENSG00000164199.18	ENST00000405460.9:ENST00000640403.1:ENST00000639473.1:ENST00000639431.1:ENST00000640779.1:ENST00000640012.1:ENST00000640374.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	71	2	2.06132	2.6213499999999996	3.18138	0.0408268	0.00487606	0.1451	0.0640618
chr1	1689082	1689181	360927	0	-	0.484848	(0.476,0.515]	chr1	42013	119	INTRON	INTRON	SLC35E2B	ENSG00000189339.12	ENST00000614300.4:ENST00000617444.5:ENST00000611123.1:ENST00000481276.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	49	2	2.10874	2.621315	3.13389	0.0285608	0.00405473	0.12666	0.0578376
chr5	32424490	32424590	2599126	0	-	0.36	(0.35,0.378]	chr5	246966	40	INTRON	INTRON	ZFR	ENSG00000056097.16	ENST00000265069.13:ENST00000505366.1:ENST00000505204.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	121	2	1.60061	2.621295	3.64198	0.0249092	3.10054e-5	0.12011	0.00443764
chr2	107727246	107727346	1205822	0	-	0.32	(0.28,0.32]	chr2	128532	96	INTRON	INTRON	LINC01885:ENSG00000286769	ENSG00000237880.2:ENSG00000286769.1	ENST00000654481.1:ENST00000669817.1	lncRNA	lncRNA	lncRNA	lncRNA	6	124	2	2.53475	2.6212799999999996	2.70781	0.00257029	0.00185874	0.0466761	0.0389941
chr19	21398159	21398255	7040831	0	+	0.354167	(0.35,0.378]	chr19	702017	9	UTR3	UTR3:EXON_MRNA:INTRON	ZNF493	ENSG00000196268.12	ENST00000596302.5:ENST00000392288.7:ENST00000355504.4:ENST00000594390.5:ENST00000596815.1:ENST00000339914.6:ENST00000599461.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	54	2	1.87717	2.621155	3.36514	0.0555068	0.00173699	0.165463	0.03851
chr4	150675189	150675289	2268323	0	-	0.34	(0.32,0.35]	chr4	220713	757	INTRON	INTRON	LRBA	ENSG00000198589.14	ENST00000357115.9:ENST00000651943.2:ENST00000510413.5:ENST00000509835.5:ENST00000651695.1:ENST00000651035.1:ENST00000507224.5:ENST00000513021.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	79	2	1.72405	2.6210649999999998	3.51808	0.0275418	0.00151238	0.137011	0.0352794
chr22	19848700	19848799	7555567	0	-	0.59596	(0.57,1]	chr22	772444	27	UTR3	UTR3:EXON_MRNA:INTRON	GNB1L:RTL10	ENSG00000185838.14:ENSG00000215012.9	ENST00000329517.11:ENST00000403325.5:ENST00000405009.5:ENST00000460402.5:ENST00000481086.1:ENST00000453108.1:ENST00000407472.5:ENST00000405640.1:ENST00000328554.9:ENST00000484072.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	70	2	1.56282	2.62103	3.67924	0.0114364	9.71527e-6	0.0956037	0.00240387
chr17	82450198	82450254	6853277	0	-	0.642857	(0.57,1]	chr17	679300	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CYBC1	ENSG00000178927.18	ENST00000306645.10:ENST00000342572.12:ENST00000434650.6:ENST00000584024.5:ENST00000437807.6:ENST00000583617.5:ENST00000585064.5:ENST00000578919.5:ENST00000580560.5:ENST00000581196.5:ENST00000584503.5:ENST00000585080.5:ENST00000577888.5:ENST00000577707.5:ENST00000578913.5:ENST00000584891.5:ENST00000584408.5:ENST00000577696.5:ENST00000577471.5:ENST00000577834.5:ENST00000578941.5:ENST00000578064.1:ENST00000582395.5:ENST00000582608.5:ENST00000583359.1:ENST00000582545.2:ENST00000583778.1:ENST00000583242.1:ENST00000585115.1:ENST00000584791.1:ENST00000582456.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	35	2	2.58733	2.621015	2.6547	0.00454222	0.00346848	0.0595107	0.0539802
chr16	28153731	28153820	6467873	0	-	0.337079	(0.32,0.35]	chr16	624543	4	INTRON	INTRON	XPO6	ENSG00000169180.12	ENST00000304658.10:ENST00000565698.5:ENST00000564337.5:ENST00000566175.1:ENST00000574435.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	77	2	2.3471	2.620925	2.89475	0.0156413	0.00160352	0.101393	0.0367961
chr5	139311126	139311224	2499557	0	+	0.336735	(0.32,0.35]	chr5	238922	12	EXON_MRNA	EXON_MRNA:INTRON	MATR3	ENSG00000280987.4:ENSG00000015479.20	ENST00000509990.5:ENST00000506147.5:ENST00000512107.5:ENST00000361059.7:ENST00000394800.6:ENST00000502929.5:ENST00000504203.5:ENST00000509644.5:ENST00000512876.5:ENST00000513678.5:ENST00000513121.1:ENST00000504045.5:ENST00000504311.5:ENST00000502499.5:ENST00000510056.5:ENST00000511249.5:ENST00000394805.8:ENST00000507860.1:ENST00000509918.5:ENST00000503811.5:ENST00000511978.5:ENST00000618441.5:ENST00000514528.5:ENST00000504643.5:ENST00000515833.2:ENST00000514402.1:ENST00000505625.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	103	2	1.69257	2.620915	3.54926	0.0122626	0.00133843	0.0969406	0.0335491
chr21	43909000	43909100	7414230	0	+	0.36	(0.35,0.378]	chr21	755698	46	INTRON	INTRON	AGPAT3	ENSG00000160216.21	ENST00000291572.13:ENST00000448287.5:ENST00000398061.5:ENST00000327505.6	protein_coding	protein_coding	protein_coding	protein_coding	3	54	2	2.19034	2.62085	3.05136	0.023941	0.00578894	0.119443	0.0684334
chr12	110287555	110287654	5226161	0	+	0.444444	(0.44,0.476]	chr12	495234	44	INTRON	INTRON	ATP2A2	ENSG00000174437.18	ENST00000552636.2:ENST00000308664.10:ENST00000539276.7:ENST00000377685.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	20	306	2	2.26025	2.620825	2.9814	5.85242e-4	1.47825e-6	0.02243	7.28094e-4
chr10	21974023	21974123	4578386	0	-	0.49	(0.476,0.515]	chr10	421947	445	INTRON	INTRON	DNAJC1	ENSG00000136770.11	ENST00000376980.8:ENST00000476103.3:ENST00000447548.5:ENST00000376946.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	79	2	2.58253	2.62082	2.65911	0.00600101	0.00116074	0.0674604	0.0314098
chr4	6789235	6789335	1921653	0	+	0.49	(0.476,0.515]	chr4	192985	60	INTRON	INTRON	KIAA0232	ENSG00000170871.12	ENST00000503278.1:ENST00000508423.1:ENST00000307659.6:ENST00000425103.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	79	2	2.58253	2.62082	2.65911	0.00600101	0.00116074	0.0674604	0.0314098
chr1	39458688	39458787	78561	0	+	0.343434	(0.32,0.35]	chr1	10187	3	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MACF1	ENSG00000127603.32	ENST00000361689.7:ENST00000567887.5:ENST00000372915.8:ENST00000564288.6:ENST00000671089.2:ENST00000372925.6:ENST00000289893.8:ENST00000686067.1:ENST00000687997.1:ENST00000683517.1:ENST00000691623.1:ENST00000360115.8:ENST00000497964.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	77	2	2.53107	2.6208	2.71053	0.00860484	0.00346747	0.0784134	0.0539802
chr20	49181537	49181637	7352313	0	-	0.52	(0.515,0.57]	chr20	749697	19	INTRON	INTRON	STAU1	ENSG00000124214.21	ENST00000371856.7:ENST00000371828.7:ENST00000340954.11:ENST00000347458.9:ENST00000360426.8:ENST00000371792.5:ENST00000371802.5:ENST00000437404.2	protein_coding	protein_coding	protein_coding	protein_coding	3	43	2	2.32967	2.6205350000000003	2.9114	0.0133671	0.00826019	0.0946278	0.0813266
chr21	42994038	42994138	7411734	0	+	0.53	(0.515,0.57]	chr21	755317	190	INTRON	INTRON	PKNOX1	ENSG00000160199.15	ENST00000432907.6:ENST00000418336.6:ENST00000291547.10:ENST00000480179.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	43	2	2.32967	2.6205350000000003	2.9114	0.0133671	0.00826019	0.0946278	0.0813266
chr11	5428353	5428453	4897503	0	-	0.29	(0.28,0.32]	chr11	459187	811	INTRON	INTRON	HBG2:ENSG00000239920:HBE1:OR51B5	ENSG00000196565.15:ENSG00000239920.2:ENSG00000213931.7:ENSG00000167355.8	ENST00000380252.6:ENST00000380259.7:ENST00000292896.3:ENST00000380237.5:ENST00000420726.6:ENST00000420465.6:ENST00000415970.6:ENST00000418729.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:nonsense_mediated_decay:processed_transcript	6	96	2	1.52982	2.620445	3.71107	0.0379288	8.39788e-4	0.157212	0.0266487
chr16	84974863	84974962	6533794	0	-	0.434343	(0.408,0.44]	chr16	633102	8	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ZDHHC7	ENSG00000153786.13	ENST00000313732.9:ENST00000344861.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	82	2	1.64527	2.620415	3.59556	0.0175998	8.33275e-4	0.11319	0.0266389
chr16	538884	538982	6272322	0	+	0.540816	(0.515,0.57]	chr16	598569	19	EXON_LNCRNA	EXON_LNCRNA:INTRON	CAPN15	ENSG00000103326.12	ENST00000219611.7:ENST00000562370.5:ENST00000567216.5:ENST00000568988.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	80	2	2.41082	2.62038	2.82994	0.00168661	0.00167359	0.0381778	0.0370386
chr9	133363175	133363271	4370308	0	-	0.572917	(0.57,1]	chr9	402163	19	UTR3	UTR3:EXON_MRNA	SURF4	ENSG00000148248.14	ENST00000545297.5:ENST00000613129.4:ENST00000618229.4:ENST00000371989.8:ENST00000485435.6	protein_coding	protein_coding	protein_coding	protein_coding	36	268	2	2.46335	2.62036	2.77737	2.59118e-6	3.85795e-7	0.00113569	3.20556e-4
chr6	111006047	111006146	2939545	0	+	0.545455	(0.515,0.57]	chr6	276871	59	INTRON	INTRON	RPF2	ENSG00000197498.13	ENST00000368864.8:ENST00000441448.7:ENST00000607388.1:ENST00000425871.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	52	2	2.11384	2.620235	3.12663	0.0118599	0.00374498	0.0899583	0.0562234
chr5	149501234	149501275	2750564	0	-	0.317073	(0.28,0.32]	chr5	259004	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	CSNK1A1:ENSG00000230551	ENSG00000113712.19:ENSG00000230551.4	ENST00000261798.10:ENST00000377843.8:ENST00000657001.1:ENST00000499521.2:ENST00000515768.6:ENST00000606719.6:ENST00000657462.1:ENST00000661952.1:ENST00000504676.5:ENST00000515435.5:ENST00000662268.1:ENST00000657706.1:ENST00000606826.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	140	2	2.09576	2.620165	3.14457	0.00323062	9.588e-4	0.0524329	0.0282401
chr7	132964521	132964621	3644708	0	-	0.44	(0.408,0.44]	chr7	338848	772	INTRON	INTRON	CHCHD3	ENSG00000106554.13	ENST00000262570.10:ENST00000448878.6:ENST00000496427.5:ENST00000423635.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	10	128	2	1.63198	2.62013	3.60828	0.0137074	3.18952e-5	0.0949306	0.00450719
chr3	47433630	47433730	1682430	0	-	0.52	(0.515,0.57]	chr3	171861	46	INTRON	INTRON	SCAP	ENSG00000114650.21	ENST00000265565.10:ENST00000441517.6:ENST00000320017.10:ENST00000648151.1:ENST00000416208.5:ENST00000416847.5:ENST00000495603.2:ENST00000420588.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	68	2	2.364	2.6201299999999996	2.87626	0.00447856	0.00136224	0.0593175	0.0339121
chr14	21472792	21472890	5836450	0	-	0.367347	(0.35,0.378]	chr14	554804	37	INTRON	INTRON	RAB2B	ENSG00000129472.15	ENST00000397762.6:ENST00000649801.1:ENST00000417141.5:ENST00000461909.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	87	2	2.03027	2.62012	3.20997	0.0185322	3.32797e-4	0.108861	0.0162254
chr1	96750525	96750624	168229	0	+	0.292929	(0.28,0.32]	chr1	18215	266	INTRON	INTRON	PTBP2	ENSG00000117569.19	ENST00000482253.5:ENST00000675735.1:ENST00000609116.5:ENST00000674951.1:ENST00000675080.1:ENST00000426398.3:ENST00000460706.5:ENST00000370197.5:ENST00000370198.5:ENST00000476419.5:ENST00000676292.1:ENST00000676096.1:ENST00000675365.1:ENST00000674579.1:ENST00000675401.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	47	2	2.46018	2.62011	2.78004	0.0375904	0.0193244	0.156054	0.108861
chr8	129389755	129389829	4059165	0	-	0.310811	(0.28,0.32]	chr8	369569	1	SSB_ADJ	SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1:ENST00000676273.1:ENST00000667643.1:ENST00000668791.1:ENST00000663716.1:ENST00000663572.1:ENST00000676148.1:ENST00000667962.1:ENST00000674877.1:ENST00000675316.1:ENST00000674656.1:ENST00000446592.7:ENST00000667341.1:ENST00000675186.1:ENST00000652971.1:ENST00000661447.1:ENST00000674863.1:ENST00000675498.1:ENST00000675527.1:ENST00000676108.1:ENST00000657647.1:ENST00000675589.1:ENST00000675913.1:ENST00000675109.1:ENST00000671632.1:ENST00000671311.1:ENST00000676099.1:ENST00000660652.1:ENST00000675522.1:ENST00000675183.1:ENST00000658861.1:ENST00000663991.1:ENST00000675044.1:ENST00000675435.1:ENST00000674639.1:ENST00000676069.1:ENST00000675532.1:ENST00000674762.1:ENST00000523151.6:ENST00000675948.1:ENST00000665364.1:ENST00000657251.1:ENST00000675166.1:ENST00000674883.1:ENST00000675867.1:ENST00000674580.1:ENST00000675393.1:ENST00000520048.1:ENST00000674906.1:ENST00000676030.1:ENST00000670588.1:ENST00000675072.1:ENST00000664936.1:ENST00000652914.1	lncRNA	lncRNA	lncRNA	lncRNA	2	47	2	2.46018	2.62011	2.78004	0.0375904	0.0193244	0.156054	0.108861
chr17	42505736	42505834	6611781	0	+	0.357143	(0.35,0.378]	chr17	644172	25	INTRON	INTRON	ATP6V0A1	ENSG00000033627.17	ENST00000393829.6:ENST00000343619.9:ENST00000537728.5:ENST00000264649.10:ENST00000585525.5:ENST00000544137.5:ENST00000587510.5:ENST00000586201.5:ENST00000588138.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	121	2	2.33792	2.620095	2.90227	0.0024225	5.81688e-4	0.0454587	0.0223753
chr3	33429639	33429739	1651605	0	-	0.32	(0.28,0.32]	chr3	169400	35	INTRON	INTRON	UBP1	ENSG00000153560.12	ENST00000283629.8:ENST00000447368.6:ENST00000283628.9:ENST00000456378.1:ENST00000496310.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	65	2	2.39347	2.6200900000000003	2.84671	0.0504457	0.00216662	0.156383	0.0434015
chr11	11920341	11920417	4736349	0	+	0.394737	(0.378,0.408]	chr11	438654	1	CDS	CDS:EXON_MRNA	USP47	ENSG00000170242.19	ENST00000339865.9:ENST00000527733.7:ENST00000399455.2	protein_coding	protein_coding	protein_coding	protein_coding	4	61	2	2.18512	2.62007	3.05502	0.00902136	0.00689519	0.0851259	0.0717484
chr2	135922850	135922918	1234075	0	-	0.397059	(0.378,0.408]	chr2	131392	2	CDS	CDS:EXON_MRNA	DARS1	ENSG00000115866.11	ENST00000264161.9	protein_coding	protein_coding	protein_coding	protein_coding	4	61	2	2.18512	2.62007	3.05502	0.00902136	0.00689519	0.0851259	0.0717484
chr10	63440319	63440419	4635135	0	-	0.4	(0.378,0.408]	chr10	426236	595	INTRON	INTRON	JMJD1C	ENSG00000171988.20	ENST00000399262.7:ENST00000633035.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	95	2	1.82119	2.620035	3.41888	0.0214651	1.00827e-4	0.114274	0.00847812
chr3	49982966	49983066	1423389	0	+	0.5	(0.476,0.515]	chr3	149988	9	INTRON	INTRON	RBM6	ENSG00000004534.15	ENST00000442092.5:ENST00000443081.5:ENST00000419610.5:ENST00000441115.5:ENST00000422955.5:ENST00000454079.5:ENST00000266022.9:ENST00000425608.5:ENST00000434592.5:ENST00000464013.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	60	2	2.41328	2.620005	2.82673	0.0134403	0.00355364	0.0946278	0.0547657
chr8	90365866	90365966	3793754	0	+	0.48	(0.476,0.515]	chr8	351792	138	INTRON	INTRON	LINC00534	ENSG00000253394.7	ENST00000662145.1:ENST00000655523.1:ENST00000517400.6:ENST00000658299.1:ENST00000663329.1:ENST00000658342.1:ENST00000523283.6:ENST00000655219.1:ENST00000662692.1:ENST00000667296.1:ENST00000667565.1:ENST00000523406.2:ENST00000659030.1:ENST00000653734.1:ENST00000654785.1:ENST00000524361.5:ENST00000668745.1:ENST00000661519.1:ENST00000671657.1:ENST00000655123.1:ENST00000663098.1:ENST00000670903.1:ENST00000654946.1	lncRNA	lncRNA	lncRNA	lncRNA	6	91	2	1.82595	2.619925	3.4139	0.0202339	1.00747e-4	0.109955	0.00847812
chr5	127524188	127524269	2479861	0	+	0.358025	(0.35,0.378]	chr5	236781	2	SS3_PROX	SS3_PROX:INTRON	PRRC1	ENSG00000164244.21	ENST00000296666.13:ENST00000442138.6:ENST00000512635.2	protein_coding	protein_coding	protein_coding	protein_coding	3	57	2	2.32443	2.619795	2.91516	0.0544216	0.0013628	0.164972	0.0339121
chr17	59840497	59840594	6643740	0	+	0.278351	[0,0.28]	chr17	648787	7	UTR3	UTR3:EXON_MRNA	VMP1	ENSG00000062716.13	ENST00000262291.9:ENST00000592790.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	12	207	2	1.85164	2.619675	3.3877100000000002	0.00453028	4.85161e-4	0.0617442	0.0203841
chr7	43687610	43687710	3525959	0	-	0.24	[0,0.28]	chr7	328779	215	INTRON	INTRON	COA1	ENSG00000106603.20	ENST00000415076.6:ENST00000446330.6:ENST00000446564.5:ENST00000438444.5:ENST00000223336.11:ENST00000310564.10:ENST00000415798.5:ENST00000431651.5:ENST00000451651.5:ENST00000418140.5:ENST00000448704.5:ENST00000470156.1:ENST00000457939.1:ENST00000420441.1:ENST00000478504.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	53	2	2.5055	2.61967	2.73384	0.0359431	0.0246308	0.152322	0.12011
chr8	90623881	90623981	3986418	0	-	0.28	[0,0.28]	chr8	365174	20	UTR3	UTR3:EXON_MRNA	TMEM64	ENSG00000180694.14	ENST00000418210.2:ENST00000458549.7	protein_coding	protein_coding	protein_coding	protein_coding	2	53	2	2.5055	2.61967	2.73384	0.0359431	0.0246308	0.152322	0.12011
chr3	5180620	5180717	1354169	0	+	0.298969	(0.28,0.32]	chr3	142395	20	UTR3	UTR3:EXON_MRNA	ARL8B	ENSG00000134108.14	ENST00000256496.8	protein_coding	protein_coding	protein_coding	protein_coding	8	141	2	1.69879	2.619615	3.54044	0.0205261	7.94527e-5	0.110999	0.00742316
chr2	37244571	37244669	745729	0	+	0.367347	(0.35,0.378]	chr2	85424	2	INTRON	INTRON	NDUFAF7	ENSG00000003509.16	ENST00000455230.5:ENST00000002125.9:ENST00000474154.5:ENST00000336237.10:ENST00000431821.5:ENST00000483999.5:ENST00000439218.5:ENST00000474257.5:ENST00000419278.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	64	2	2.20096	2.61955	3.03814	0.0087123	0.00767003	0.0844834	0.075364
chr19	3595076	3595170	7118041	0	-	0.478723	(0.476,0.515]	chr19	715813	1	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	TBXA2R	ENSG00000006638.13	ENST00000375190.10:ENST00000589966.1:ENST00000411851.3	protein_coding	protein_coding	protein_coding	protein_coding	4	60	2	1.74317	2.61952	3.49587	0.0396373	0.00120011	0.161534	0.0315806
chr1	92260765	92260864	504977	0	-	0.30303	(0.28,0.32]	chr1	59680	124	INTRON	INTRON	GLMN	ENSG00000174842.17	ENST00000370360.8:ENST00000495106.5:ENST00000495852.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	75	2	2.32052	2.619515	2.91851	0.0130672	0.00612675	0.093385	0.0708525
chr19	15293446	15293546	7147015	0	-	0.46	(0.44,0.476]	chr19	721965	131	INTRON	INTRON	BRD4	ENSG00000141867.19	ENST00000679869.1:ENST00000360016.9:ENST00000594841.5:ENST00000597315.5:ENST00000601941.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	138	2	2.52508	2.61951	2.71394	0.00121905	1.54858e-4	0.0319984	0.0106835
chr1	95167016	95167116	167068	0	+	0.46	(0.44,0.476]	chr1	18132	152	INTRON	INTRON	TLCD4:TLCD4-RWDD3	ENSG00000152078.10:ENSG00000271092.5	ENST00000370203.9:ENST00000456991.5:ENST00000604534.5:ENST00000455656.1:ENST00000604203.1	protein_coding	protein_coding	protein_coding	protein_coding	3	49	2	2.49823	2.61943	2.74063	0.0176095	0.00718224	0.105143	0.0756118
chr16	16657039	16657139	6312436	0	+	0.46	(0.44,0.476]	chr16	604112	82	INTRON	INTRON	ENSG00000260126	ENSG00000260126.2	ENST00000567465.2	lncRNA	lncRNA	lncRNA	lncRNA	5	80	2	2.26452	2.6193999999999997	2.97428	0.00654074	0.00125568	0.0735539	0.0323608
chr11	9294166	9294265	4909229	0	-	0.393939	(0.378,0.408]	chr11	460149	53	INTRON	INTRON	TMEM41B	ENSG00000166471.11	ENST00000524543.5:ENST00000528080.6:ENST00000299596.8:ENST00000611268.4:ENST00000527813.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	177	2	2.30388	2.61937	2.93486	0.00207021	2.1061e-5	0.0411801	0.00355038
chr1	65276210	65276309	135755	0	+	0.353535	(0.35,0.378]	chr1	15346	109	INTRON	INTRON	DNAJC6	ENSG00000116675.16	ENST00000463018.5:ENST00000494710.6:ENST00000263441.11:ENST00000395325.7:ENST00000483402.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	54	2	2.60341	2.61934	2.63527	0.0275785	0.00443588	0.123904	0.061054
chr10	35057611	35057710	4600824	0	-	0.373737	(0.35,0.378]	chr10	423847	24	INTRON	INTRON	CUL2	ENSG00000108094.17	ENST00000626172.3:ENST00000374751.7:ENST00000374748.5:ENST00000374749.8:ENST00000690123.1:ENST00000537177.6:ENST00000374746.6:ENST00000691974.1:ENST00000688571.1:ENST00000690393.1:ENST00000690092.1:ENST00000374754.9:ENST00000691272.1:ENST00000688390.1:ENST00000687282.1:ENST00000691201.1:ENST00000687194.1:ENST00000691962.1:ENST00000691858.1:ENST00000691263.1:ENST00000687524.1:ENST00000673636.2:ENST00000692866.1:ENST00000693739.1:ENST00000686302.1:ENST00000685681.1:ENST00000421317.5:ENST00000684965.1:ENST00000691457.1:ENST00000688541.1:ENST00000685488.1:ENST00000686748.1:ENST00000690789.1:ENST00000686903.1:ENST00000691635.1:ENST00000684955.1:ENST00000688736.1:ENST00000686156.1:ENST00000685421.1:ENST00000468804.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	54	2	2.60341	2.61934	2.63527	0.0275785	0.00443588	0.123904	0.061054
chr17	42472338	42472438	6611426	0	+	0.29	(0.28,0.32]	chr17	644092	10	INTRON	INTRON	ATP6V0A1	ENSG00000033627.17	ENST00000393829.6:ENST00000343619.9:ENST00000537728.5:ENST00000588901.5:ENST00000264649.10:ENST00000585525.5:ENST00000544137.5:ENST00000589727.5:ENST00000592324.1:ENST00000587375.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	65	2	1.90263	2.619295	3.33596	0.0503272	0.00342993	0.17488	0.0517761
chr1	244674305	244674405	347923	0	+	0.26	[0,0.28]	chr1	40357	179	INTRON	INTRON	DESI2	ENSG00000121644.19	ENST00000263831.11:ENST00000302550.16:ENST00000418162.1	protein_coding	protein_coding	protein_coding	protein_coding	2	52	2	2.33055	2.61926	2.90797	0.062338	0.0118539	0.175343	0.0962115
chr4	10453530	10453628	2107573	0	-	0.255102	[0,0.28]	chr4	208515	28	EXON_MRNA	EXON_MRNA:INTRON	ZNF518B	ENSG00000178163.8	ENST00000326756.4:ENST00000507515.1:ENST00000503068.1:ENST00000515072.1:ENST00000500268.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	52	2	2.33055	2.61926	2.90797	0.062338	0.0118539	0.175343	0.0962115
chr19	53435417	53435516	7097141	0	+	0.464646	(0.44,0.476]	chr19	711580	30	INTRON	INTRON	ZNF761:TPM3P9	ENSG00000160336.17:ENSG00000241015.2	ENST00000651864.1:ENST00000684525.1:ENST00000424846.3:ENST00000610928.4	protein_coding	protein_coding	protein_coding:transcribed_processed_pseudogene	protein_coding:processed_transcript	5	81	2	2.1762	2.61921	3.06222	0.0092251	8.483e-4	0.0855292	0.0267232
chr4	39723344	39723444	1953244	0	+	0.5	(0.476,0.515]	chr4	195630	246	INTRON	INTRON	UBE2K	ENSG00000078140.14	ENST00000510934.5:ENST00000261427.10:ENST00000438068.6:ENST00000513231.5:ENST00000503368.5:ENST00000445950.2:ENST00000510719.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	16	238	2	2.51705	2.6191649999999997	2.72128	7.99878e-5	7.80595e-5	0.00802983	0.00736696
chr10	31834960	31835059	4589375	0	-	0.454545	(0.44,0.476]	chr10	423129	28	INTRON	INTRON	ARHGAP12	ENSG00000165322.18	ENST00000344936.7:ENST00000375245.8:ENST00000396144.8:ENST00000375250.9:ENST00000311380.8:ENST00000497103.1:ENST00000454919.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	49	2	2.21079	2.61915	3.02751	0.0194581	0.00715968	0.119831	0.0723634
chr16	67780172	67780271	6505419	0	-	0.444444	(0.44,0.476]	chr16	629654	77	INTRON	INTRON	RANBP10	ENSG00000141084.12	ENST00000317506.8:ENST00000448631.6:ENST00000602506.5:ENST00000602677.5:ENST00000602525.5:ENST00000602638.5:ENST00000602815.5:ENST00000602887.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	49	2	2.21079	2.61915	3.02751	0.0194581	0.00715968	0.119831	0.0723634
chr22	21849328	21849428	7561203	0	-	0.29	(0.28,0.32]	chr22	773388	411	INTRON	INTRON	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	7	129	2	1.82574	2.619145	3.41255	0.0174786	1.55656e-4	0.10482	0.0106835
chr1	22509333	22509433	43524	0	+	0.48	(0.476,0.515]	chr1	5189	1	SS5_PROX	SS5_PROX:INTRON	ZBTB40	ENSG00000184677.18	ENST00000650433.1:ENST00000404138.5:ENST00000374651.8:ENST00000375647.5	protein_coding	protein_coding	protein_coding	protein_coding	3	49	2	1.99197	2.619135	3.2463	0.039572	0.00262374	0.143072	0.0470772
chr11	77785858	77785958	4995628	0	-	0.42	(0.408,0.44]	chr11	472047	208	INTRON	INTRON	RSF1	ENSG00000048649.14	ENST00000308488.11:ENST00000528095.5:ENST00000440064.2:ENST00000467567.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	38	2	2.3975	2.619135	2.84077	0.040266	0.0132196	0.161534	0.0940535
chr22	17642880	17642980	7475061	0	+	0.41	(0.408,0.44]	chr22	762152	36	INTRON	INTRON	BCL2L13	ENSG00000099968.18	ENST00000399781.5:ENST00000399782.5:ENST00000337612.9:ENST00000418951.6:ENST00000538149.5:ENST00000543133.5:ENST00000611738.4:ENST00000616863.4:ENST00000618481.4:ENST00000498133.5:ENST00000317582.10:ENST00000464649.1:ENST00000493680.5:ENST00000355028.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	38	2	2.3975	2.619135	2.84077	0.040266	0.0132196	0.161534	0.0940535
chr4	53269126	53269226	2144369	0	-	0.41	(0.408,0.44]	chr4	211165	1232	INTRON	INTRON	SCFD2	ENSG00000184178.17	ENST00000401642.8:ENST00000388940.8	protein_coding	protein_coding	protein_coding	protein_coding	2	38	2	2.3975	2.619135	2.84077	0.040266	0.0132196	0.161534	0.0940535
chr7	127818857	127818957	3404079	0	+	0.48	(0.476,0.515]	chr7	318140	109	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000468166.5:ENST00000465900.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	49	2	1.99197	2.619135	3.2463	0.039572	0.00262374	0.143072	0.0470772
chr12	122218897	122218991	5439642	0	-	0.510638	(0.476,0.515]	chr12	520180	1	INTRON	INTRON	DIABLO	ENSG00000184047.20	ENST00000443649.9:ENST00000650715.1:ENST00000464942.7:ENST00000353548.11:ENST00000644227.1:ENST00000644509.1:ENST00000342392.3:ENST00000645569.1:ENST00000267169.11:ENST00000540535.6:ENST00000642640.1:ENST00000541273.6:ENST00000541656.6:ENST00000446652.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	49	2	2.16377	2.618995	3.07422	0.0243026	0.00506023	0.12011	0.0646039
chr1	31929838	31929938	414350	0	-	0.44	(0.408,0.44]	chr1	49921	4	SS5_PROX	SS5_PROX:INTRON	PTP4A2	ENSG00000184007.22	ENST00000647444.2:ENST00000649841.1:ENST00000468531.1:ENST00000534796.5:ENST00000532289.1:ENST00000526960.1:ENST00000524384.5:ENST00000528840.1:ENST00000494444.2:ENST00000529477.5:ENST00000533408.1:ENST00000475464.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	68	2	2.44674	2.61899	2.79124	0.00868283	0.00276922	0.0842798	0.0469265
chr16	69577940	69578040	6380129	0	+	0.42	(0.408,0.44]	chr16	613167	90	INTRON	INTRON	NFAT5	ENSG00000102908.22	ENST00000426654.6:ENST00000349945.7:ENST00000354436.6:ENST00000627621.3:ENST00000650987.1:ENST00000567990.5:ENST00000567239.5:ENST00000393742.7:ENST00000565301.2:ENST00000566899.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	59	2	2.13157	2.61899	3.10641	0.0109031	0.00555646	0.0923273	0.0648867
chr2	172557814	172557912	919914	0	+	0.428571	(0.408,0.44]	chr2	101322	8	INTRON	INTRON	PDK1	ENSG00000152256.14	ENST00000443353.5:ENST00000436490.5:ENST00000392571.6:ENST00000410055.5:ENST00000282077.8:ENST00000431718.5:ENST00000416991.5:ENST00000439519.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	59	2	2.13157	2.61899	3.10641	0.0109031	0.00555646	0.0923273	0.0648867
chr7	23505168	23505265	3503675	0	-	0.28866000000000003	(0.28,0.32]	chr7	326929	5	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TRA2A	ENSG00000164548.12	ENST00000297071.9:ENST00000392502.8:ENST00000538367.6:ENST00000621813.4:ENST00000497730.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	10	161	2	1.93676	2.6189549999999997	3.30115	0.00371213	4.91009e-4	0.0561984	0.0205691
chr1	26718217	26718317	51393	0	+	0.53	(0.515,0.57]	chr1	6542	203	INTRON	INTRON	ARID1A	ENSG00000117713.21	ENST00000430799.7:ENST00000324856.13:ENST00000637465.1:ENST00000457599.6	protein_coding	protein_coding	protein_coding	protein_coding	6	78	2	2.07721	2.6187899999999997	3.16037	0.0067022	4.09074e-4	0.0738715	0.0185763
chr4	169690952	169691052	2080588	0	+	0.42	(0.408,0.44]	chr4	205643	3	SS5_PROX	SS5_PROX:INTRON	CLCN3	ENSG00000109572.15	ENST00000347613.8:ENST00000360642.7:ENST00000513761.6:ENST00000613795.4:ENST00000507875.5	protein_coding	protein_coding	protein_coding	protein_coding	7	82	2	1.57433	2.618715	3.6631	0.0229059	6.21419e-4	0.12581	0.0229151
chr17	66350745	66350845	6662779	0	+	0.56	(0.515,0.57]	chr17	650324	108	INTRON	INTRON	PRKCA	ENSG00000154229.12	ENST00000413366.8:ENST00000578063.5:ENST00000284384.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	60	2	1.98329	2.618705	3.25412	0.0105419	0.00224554	0.0860389	0.0435144
chr3	160437080	160437179	1849739	0	-	0.525253	(0.515,0.57]	chr3	186017	13	UTR3	UTR3:EXON_MRNA:INTRON	ENSG00000248710:TRIM59	ENSG00000248710.1:ENSG00000213186.8	ENST00000483754.1:ENST00000543469.1:ENST00000309784.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	51	2	1.8661	2.618675	3.37125	0.0274846	0.00136343	0.123904	0.0339121
chr1	36228157	36228257	72968	0	+	0.46	(0.44,0.476]	chr1	9371	23	INTRON	INTRON	THRAP3	ENSG00000054118.15	ENST00000469141.6:ENST00000648638.1:ENST00000354618.10	protein_coding	protein_coding	protein_coding	protein_coding	5	79	2	2.18344	2.618585	3.05373	0.0102102	6.56725e-4	0.0850389	0.0232396
chr13	28292813	28292910	5462394	0	+	0.278351	[0,0.28]	chr13	523342	4	UTR3	UTR3:EXON_MRNA	PAN3	ENSG00000152520.14	ENST00000380958.8:ENST00000399613.1	protein_coding	protein_coding	protein_coding	protein_coding	8	178	2	2.37582	2.618545	2.86127	0.0016947	0.00133435	0.0381936	0.0335077
chr21	33589663	33589744	7441743	0	-	0.358025	(0.35,0.378]	chr21	759591	5	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	ENSG00000249209:CRYZL1	ENSG00000249209.2:ENSG00000205758.12	ENST00000429238.2:ENST00000381554.8:ENST00000290244.9:ENST00000468349.1:ENST00000381540.7:ENST00000452420.5:ENST00000441940.5:ENST00000480893.5:ENST00000445393.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	40	2	2.24535	2.6185400000000003	2.99173	0.0647516	0.00713365	0.179192	0.0756118
chr15	72580230	72580311	6060234	0	+	0.419753	(0.408,0.44]	chr15	576922	1	SS3_PROX	SS3_PROX:INTRON	ARIH1	ENSG00000166233.15	ENST00000379887.9:ENST00000561987.5:ENST00000565950.1:ENST00000561770.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	37	2	2.27698	2.618525	2.96007	0.0583528	0.00753901	0.167723	0.0773151
chr3	47755964	47756064	1684817	0	-	0.44	(0.408,0.44]	chr3	172116	96	INTRON	INTRON	SMARCC1	ENSG00000173473.11	ENST00000254480.10:ENST00000425518.5:ENST00000454240.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	37	2	2.27698	2.618525	2.96007	0.0583528	0.00753901	0.167723	0.0773151
chr2	9547814	9547913	1064412	0	-	0.414141	(0.408,0.44]	chr2	113556	37	INTRON	INTRON	ADAM17	ENSG00000151694.14	ENST00000310823.8:ENST00000648548.1:ENST00000649227.1:ENST00000648857.1:ENST00000647979.1:ENST00000647610.1:ENST00000650116.1:ENST00000647622.1:ENST00000649972.1:ENST00000650241.1:ENST00000618923.2:ENST00000478059.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	80	2	2.04611	2.61838	3.19065	0.016628	3.2984e-4	0.102621	0.0161352
chr19	8402924	8402994	7010477	0	+	0.542857	(0.515,0.57]	chr19	696089	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RAB11B	ENSG00000185236.12	ENST00000328024.11	protein_coding	protein_coding	protein_coding	protein_coding	3	44	2	2.48902	2.61837	2.74772	0.0142192	0.00760558	0.103638	0.0749571
chr8	38123955	38124053	3734866	0	+	0.530612	(0.515,0.57]	chr8	347004	16	INTRON	INTRON	ASH2L	ENSG00000129691.16	ENST00000545394.2:ENST00000343823.11:ENST00000517496.5:ENST00000428278.6:ENST00000521652.5:ENST00000518186.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	44	2	2.48902	2.61837	2.74772	0.0142192	0.00760558	0.103638	0.0749571
chr5	88257032	88257132	2669624	0	-	0.48	(0.476,0.515]	chr5	252698	61	INTRON	INTRON	TMEM161B	ENSG00000164180.14	ENST00000514135.5:ENST00000296595.11:ENST00000511087.5:ENST00000510089.5:ENST00000506536.5:ENST00000512429.5:ENST00000507872.1:ENST00000509387.5:ENST00000503755.5:ENST00000513487.5:ENST00000515477.5:ENST00000503194.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	59	2	1.86014	2.61823	3.37632	0.0277606	0.00195267	0.137011	0.0400465
chr5	32161858	32161958	2597391	0	-	0.55	(0.515,0.57]	chr5	246744	176	INTRON	INTRON	GOLPH3	ENSG00000113384.14	ENST00000265070.7:ENST00000503610.5:ENST00000512668.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	57	2	2.51561	2.618205	2.7208	0.00635044	0.00306828	0.0723103	0.0494933
chr17	57426197	57426297	6634455	0	+	0.38	(0.378,0.408]	chr17	648045	188	INTRON	INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000674961.1:ENST00000582453.5:ENST00000675656.1:ENST00000322684.7:ENST00000579590.5:ENST00000442934.6:ENST00000579180.2:ENST00000579205.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	38	2	2.30961	2.61813	2.92665	0.055088	0.0086017	0.165463	0.083729
chr2	26203961	26204061	1085686	0	-	0.39	(0.378,0.408]	chr2	116016	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	HADHA	ENSG00000084754.12	ENST00000380649.8:ENST00000644428.1:ENST00000492433.2:ENST00000643057.1:ENST00000645274.1:ENST00000643233.1:ENST00000643063.1:ENST00000646031.1:ENST00000646483.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	38	2	2.30961	2.61813	2.92665	0.055088	0.0086017	0.165463	0.083729
chr9	123111332	123111430	4338875	0	-	0.408163	(0.378,0.408]	chr9	398822	17	EXON_LNCRNA	EXON_LNCRNA:INTRON	MIR600HG:STRBP	ENSG00000236901.6:ENSG00000165209.19	ENST00000449175.1:ENST00000530364.1:ENST00000545631.2:ENST00000478973.6:ENST00000471564.6	protein_coding	nonsense_mediated_decay	protein_coding:lncRNA	nonsense_mediated_decay:lncRNA:processed_transcript	2	38	2	2.30961	2.61813	2.92665	0.055088	0.0086017	0.165463	0.083729
chr10	5448052	5448152	4384216	0	+	0.17	[0,0.28]	chr10	404411	8	INTRON	INTRON	NET1	ENSG00000173848.19	ENST00000355029.9:ENST00000449083.5:ENST00000486354.1:ENST00000380359.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	74	2	2.38757	2.6180849999999998	2.8486	0.0552962	0.00254189	0.165463	0.0465056
chr9	130736454	130736554	4214089	0	+	0.43	(0.408,0.44]	chr9	386427	216	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000393293.4	protein_coding	protein_coding	protein_coding	protein_coding	14	214	2	2.35418	2.61806	2.88194	2.94324e-4	5.58643e-5	0.0153414	0.00654312
chr1	26235996	26236095	49502	0	+	0.414141	(0.408,0.44]	chr1	6192	13	INTRON	INTRON	CEP85	ENSG00000130695.16	ENST00000451429.8:ENST00000640292.2:ENST00000252992.8	protein_coding	protein_coding	protein_coding	protein_coding	10	156	2	2.16319	2.61802	3.07285	0.00180756	7.41489e-5	0.0393572	0.00770735
chr16	21470694	21470786	6461051	0	-	0.413043	(0.408,0.44]	chr16	623321	4	INTRON	INTRON	SMG1P3	ENSG00000180747.15	ENST00000522480.5:ENST00000522841.6	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	2	37	2	2.58179	2.6179949999999996	2.6542	0.024638	0.0227514	0.131869	0.117618
chr2	174147398	174147498	1269841	0	-	0.41	(0.408,0.44]	chr2	134282	50	INTRON	INTRON	OLA1	ENSG00000138430.16	ENST00000284719.8:ENST00000344357.9:ENST00000428402.6:ENST00000409546.5:ENST00000429575.1	protein_coding	protein_coding	protein_coding	protein_coding	2	37	2	2.58179	2.6179949999999996	2.6542	0.024638	0.0227514	0.131869	0.117618
chr20	47263027	47263127	7348564	0	-	0.43	(0.408,0.44]	chr20	749288	2	INTRON	INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000467200.6:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000468376.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	37	2	2.58179	2.6179949999999996	2.6542	0.024638	0.0227514	0.131869	0.117618
chr22	28544161	28544261	7571577	0	-	0.42	(0.408,0.44]	chr22	774287	1012	INTRON	INTRON	TTC28	ENSG00000100154.15	ENST00000397906.7	protein_coding	protein_coding	protein_coding	protein_coding	2	37	2	2.58179	2.6179949999999996	2.6542	0.024638	0.0227514	0.131869	0.117618
chr7	7684162	7684261	3276140	0	+	0.414141	(0.408,0.44]	chr7	304695	76	INTRON	INTRON	UMAD1	ENSG00000219545.12	ENST00000493246.5:ENST00000682710.1:ENST00000463725.5:ENST00000638342.1:ENST00000636849.1:ENST00000639343.1:ENST00000639110.1:ENST00000471760.5:ENST00000482067.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	37	2	2.58179	2.6179949999999996	2.6542	0.024638	0.0227514	0.131869	0.117618
chr7	100082200	100082300	3585266	0	-	0.43	(0.408,0.44]	chr7	334087	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ZNF3	ENSG00000166526.18	ENST00000428683.5	protein_coding	protein_coding	protein_coding	protein_coding	2	37	2	2.58179	2.6179949999999996	2.6542	0.024638	0.0227514	0.131869	0.117618
chr7	156865576	156865676	3687742	0	-	0.36	(0.35,0.378]	chr7	342096	283	INTRON	INTRON	LMBR1	ENSG00000105983.23	ENST00000353442.10:ENST00000415428.5:ENST00000454132.5:ENST00000434503.5:ENST00000430278.5:ENST00000434278.5:ENST00000444719.5:ENST00000461469.5:ENST00000414218.1:ENST00000434453.1:ENST00000498034.5:ENST00000433968.5:ENST00000485985.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	40	2	2.57049	2.61798	2.66547	0.0262669	0.0233639	0.133676	0.118323
chr15	65790413	65790512	6209778	0	-	0.323232	(0.32,0.35]	chr15	592617	232	INTRON	INTRON	DENND4A	ENSG00000174485.16	ENST00000443035.8:ENST00000431932.6:ENST00000564674.5:ENST00000568515.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	142	2	2.14374	2.6179300000000003	3.09212	0.0048878	1.51463e-4	0.0608499	0.0106137
chr2	113239228	113239328	853084	0	+	0.48	(0.476,0.515]	chr2	95731	18	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:INTRON	PAX8-AS1	ENSG00000189223.15	ENST00000456685.5:ENST00000556070.6:ENST00000623306.3:ENST00000451179.6:ENST00000653055.1:ENST00000437551.6:ENST00000665814.1:ENST00000669027.1:ENST00000617509.4:ENST00000616073.5:ENST00000422956.6:ENST00000661674.1:ENST00000617278.2:ENST00000654203.1:ENST00000663248.1:ENST00000333145.9:ENST00000665717.1:ENST00000624706.3:ENST00000445745.6:ENST00000436293.6:ENST00000661255.1:ENST00000555766.1:ENST00000613966.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	3	49	2	2.13304	2.61784	3.10264	0.024866	0.00543163	0.132101	0.0645052
chr3	12652473	12652572	1617316	0	-	0.414141	(0.408,0.44]	chr3	166996	30	INTRON	INTRON	RAF1	ENSG00000132155.14	ENST00000688543.1:ENST00000685348.1:ENST00000251849.9:ENST00000442415.7:ENST00000688444.1:ENST00000692093.1:ENST00000691724.1:ENST00000423275.6:ENST00000687326.1:ENST00000688803.1:ENST00000689876.1:ENST00000686455.1:ENST00000684903.1:ENST00000693312.1:ENST00000690460.1:ENST00000692773.1:ENST00000688625.1:ENST00000693664.1:ENST00000686762.1:ENST00000692311.1:ENST00000692558.1:ENST00000691779.1:ENST00000685738.1:ENST00000690397.1:ENST00000687923.1:ENST00000688269.1:ENST00000693705.1:ENST00000689097.1:ENST00000691899.1:ENST00000689914.1:ENST00000690625.1:ENST00000689389.1:ENST00000687257.1:ENST00000686409.1:ENST00000685653.1:ENST00000689540.1:ENST00000691396.1:ENST00000685437.1:ENST00000689418.1:ENST00000687940.1:ENST00000689481.1:ENST00000491290.2:ENST00000686479.1:ENST00000689033.1:ENST00000692777.1:ENST00000689226.1:ENST00000691718.1:ENST00000692959.1:ENST00000685740.1:ENST00000688753.1:ENST00000688779.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	93	2	2.57295	2.61783	2.66271	0.00640423	4.42751e-4	0.0694534	0.0190383
chr1	50554100	50554200	448179	0	-	0.39	(0.378,0.408]	chr1	54189	140	INTRON	INTRON	FAF1	ENSG00000185104.21	ENST00000396153.7:ENST00000494400.5:ENST00000472808.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	38	2	2.60296	2.617715	2.63247	0.0267851	0.0215745	0.123836	0.123349
chr2	168887749	168887846	1259760	0	-	0.391753	(0.378,0.408]	chr2	133393	25	INTRON	INTRON	SPC25	ENSG00000152253.9	ENST00000479309.6:ENST00000282074.7:ENST00000472216.2:ENST00000451987.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	38	2	2.60296	2.617715	2.63247	0.0267851	0.0215745	0.123836	0.123349
chr9	72173249	72173349	4141504	0	+	0.4	(0.378,0.408]	chr9	377412	232	INTRON	INTRON	GDA	ENSG00000119125.17	ENST00000545168.5:ENST00000238018.8:ENST00000358399.8:ENST00000376986.5:ENST00000475764.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	38	2	2.60296	2.617715	2.63247	0.0267851	0.0215745	0.123836	0.123349
chr1	235307224	235307324	663653	0	-	0.47	(0.44,0.476]	chr1	78552	461	INTRON	INTRON	ARID4B	ENSG00000054267.22	ENST00000349213.7:ENST00000366603.6:ENST00000264183.9:ENST00000421364.5:ENST00000491632.5:ENST00000418304.1:ENST00000466653.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	91	2	1.92523	2.61767	3.31011	0.00400446	0.00259023	0.057767	0.0452934
chr6	85633577	85633676	3151353	0	-	0.343434	(0.32,0.35]	chr6	293889	91	INTRON	INTRON	ENSG00000271793:SYNCRIP	ENSG00000271793.2:ENSG00000135316.19	ENST00000682083.1:ENST00000683074.1:ENST00000681965.1:ENST00000682504.1:ENST00000682106.1:ENST00000683364.1:ENST00000683436.1:ENST00000684220.1:ENST00000683909.1:ENST00000684462.1:ENST00000616122.5:ENST00000678528.1:ENST00000676637.1:ENST00000677771.1:ENST00000355238.11:ENST00000678878.1:ENST00000677481.1:ENST00000677646.1:ENST00000676630.1:ENST00000678618.1:ENST00000676542.1:ENST00000677059.1:ENST00000444272.2:ENST00000678899.1:ENST00000369622.8:ENST00000678355.1:ENST00000676688.1:ENST00000677514.1:ENST00000678816.1:ENST00000678930.1:ENST00000678589.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	140	2	1.75223	2.6176399999999997	3.48305	0.0124153	8.91094e-5	0.091916	0.00793468
chr15	50599121	50599208	6172384	0	-	0.356322	(0.35,0.378]	chr15	588279	1	CDS	CDS:EXON_MRNA	TRPM7	ENSG00000092439.16	ENST00000646667.1:ENST00000560955.5:ENST00000560284.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	80	2	1.75561	2.61752	3.47943	0.0739399	7.9007e-5	0.190914	0.00739361
chr10	21564400	21564500	4404716	0	+	0.29	(0.28,0.32]	chr10	406446	62	INTRON	INTRON	MLLT10	ENSG00000078403.17	ENST00000651097.1:ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000650772.1:ENST00000651298.1:ENST00000495130.5:ENST00000377059.7:ENST00000476557.5:ENST00000462999.5:ENST00000430455.2:ENST00000479634.1:ENST00000480415.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	62	2	2.55521	2.61748	2.67975	0.0252505	0.0067419	0.12011	0.0739405
chr12	98534739	98534838	5198817	0	+	0.292929	(0.28,0.32]	chr12	491813	5	UTR3	UTR3:EXON_MRNA:INTRON	TMPO	ENSG00000120802.14	ENST00000556029.6:ENST00000343315.9:ENST00000266732.8:ENST00000393053.6:ENST00000261210.9:ENST00000552831.1:ENST00000556678.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	62	2	2.55521	2.61748	2.67975	0.0252505	0.0067419	0.12011	0.0739405
chr3	25753150	25753249	1642536	0	-	0.282828	(0.28,0.32]	chr3	168666	15	INTRON	INTRON	NGLY1	ENSG00000151092.18	ENST00000280700.10:ENST00000428257.5:ENST00000675217.1:ENST00000676225.1:ENST00000493324.5:ENST00000396649.7:ENST00000308710.9:ENST00000280699.13:ENST00000674841.1:ENST00000675234.1:ENST00000463611.2:ENST00000417874.6:ENST00000427041.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	62	2	2.55521	2.61748	2.67975	0.0252505	0.0067419	0.12011	0.0739405
chr19	905715	905815	7110863	0	-	0.51	(0.476,0.515]	chr19	714174	27	INTRON	INTRON	R3HDM4	ENSG00000198858.10	ENST00000589428.5:ENST00000361574.10:ENST00000587975.2:ENST00000590454.2:ENST00000589445.1:ENST00000626716.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	131	2	2.04205	2.61742	3.19279	0.00400309	6.57024e-5	0.0551303	0.0067007
chr1	65577228	65577327	138762	0	+	0.353535	(0.35,0.378]	chr1	15518	44	INTRON	INTRON	LEPR	ENSG00000116678.20	ENST00000371060.7:ENST00000371059.7:ENST00000349533.11:ENST00000616738.4:ENST00000344610.12:ENST00000462765.5:ENST00000371058.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	41	2	2.39746	2.6172750000000002	2.83709	0.041314	0.01435	0.161534	0.0966737
chr1	212071900	212072000	307708	0	+	0.37	(0.35,0.378]	chr1	35507	4	SS3_PROX	SS3_PROX:INTRON	DTL	ENSG00000143476.18	ENST00000542077.5:ENST00000366991.5:ENST00000475419.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	41	2	2.39746	2.6172750000000002	2.83709	0.041314	0.01435	0.161534	0.0966737
chr9	92220926	92221025	4286570	0	-	0.373737	(0.35,0.378]	chr9	394087	97	INTRON	INTRON	IARS1	ENSG00000196305.19	ENST00000375643.7:ENST00000443024.7:ENST00000447699.7:ENST00000683537.1:ENST00000684726.1:ENST00000683192.1:ENST00000683565.1:ENST00000682756.1:ENST00000684542.1:ENST00000683793.1:ENST00000683817.1:ENST00000682141.1:ENST00000682893.1:ENST00000684557.1:ENST00000498025.2:ENST00000682156.1:ENST00000683017.1:ENST00000682521.1:ENST00000627121.3:ENST00000683469.1:ENST00000683495.1:ENST00000682578.1:ENST00000682533.1:ENST00000472894.2:ENST00000684757.1:ENST00000684445.1:ENST00000683376.1:ENST00000683679.1:ENST00000683119.1:ENST00000684594.1:ENST00000684267.1:ENST00000683477.1:ENST00000684232.1:ENST00000684101.1:ENST00000682714.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	41	2	2.39746	2.6172750000000002	2.83709	0.041314	0.01435	0.161534	0.0966737
chr6	4811601	4811701	2791214	0	+	0.4	(0.378,0.408]	chr6	263598	344	INTRON	INTRON	CDYL	ENSG00000153046.18	ENST00000328908.9:ENST00000491864.1:ENST00000440139.5:ENST00000483019.1:ENST00000397588.8:ENST00000472453.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	10	160	2	2.53813	2.617255	2.69638	6.83968e-4	1.79607e-4	0.0239468	0.0116696
chr2	55028720	55028819	1121192	0	-	0.343434	(0.32,0.35]	chr2	120163	1	INTRON	INTRON	RTN4	ENSG00000115310.19	ENST00000404909.5:ENST00000394611.6:ENST00000317610.11:ENST00000357732.8:ENST00000337526.11:ENST00000357376.7:ENST00000405240.5:ENST00000438462.1:ENST00000427710.5	protein_coding	protein_coding	protein_coding	protein_coding	7	102	2	2.19852	2.6172449999999996	3.03597	0.00832487	0.00179437	0.0774402	0.0392772
chr2	48376727	48376825	777945	0	+	0.295918	(0.28,0.32]	chr2	87500	14	UTR3	UTR3:EXON_MRNA	FOXN2	ENSG00000170802.17	ENST00000340553.8	protein_coding	protein_coding	protein_coding	protein_coding	3	62	2	2.1895	2.6171749999999996	3.04485	0.0227063	0.00894006	0.124921	0.0799922
chr15	82540428	82540459	6247437	0	-	0.516129	(0.515,0.57]	chr15	596178	1	UTR5	UTR5:EXON_MRNA	RPS17	ENSG00000182774.13	ENST00000647841.1:ENST00000561157.5:ENST00000558397.1:ENST00000560639.1:ENST00000560229.6:ENST00000559273.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:non_stop_decay	20	243	2	2.24134	2.617165	2.99299	1.24308e-4	8.38911e-6	0.00952291	0.00220892
chr12	110392010	110392110	5409079	0	-	0.49	(0.476,0.515]	chr12	516449	30	INTRON	INTRON	ANAPC7:ENSG00000258210	ENSG00000196510.14:ENSG00000258210.1	ENST00000455511.9:ENST00000450008.3:ENST00000546720.5:ENST00000552170.2:ENST00000550231.1:ENST00000464697.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	124	2	2.59672	2.61716	2.6376	6.87765e-4	6.3664e-4	0.0240091	0.0228285
chr20	6023079	6023179	7230720	0	+	0.32	(0.28,0.32]	chr20	734841	3	SS3_PROX	SS3_PROX:INTRON	CRLS1	ENSG00000088766.12	ENST00000452938.5:ENST00000378863.9:ENST00000378868.4:ENST00000489345.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	46	2	2.2609	2.617115	2.97333	0.0671429	0.00857834	0.183051	0.083729
chr5	32599662	32599756	2334898	0	+	0.297872	(0.28,0.32]	chr5	225374	2	INTRON	INTRON	SUB1	ENSG00000113387.12	ENST00000506237.5:ENST00000512913.5:ENST00000513013.5:ENST00000265073.9:ENST00000511615.5:ENST00000515355.5:ENST00000502897.5:ENST00000504789.5:ENST00000504016.1:ENST00000511175.1:ENST00000502453.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	46	2	2.2609	2.617115	2.97333	0.0671429	0.00857834	0.183051	0.083729
chr1	1861773	1861873	362548	0	-	0.54	(0.515,0.57]	chr1	42311	217	INTRON	INTRON	GNB1	ENSG00000078369.18	ENST00000610897.4:ENST00000615252.4:ENST00000378609.9:ENST00000439272.6:ENST00000434686.6:ENST00000472614.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	81	2	2.54372	2.6170999999999998	2.69048	0.00205444	8.78655e-4	0.0409693	0.0269932
chr6	167848884	167848984	3034557	0	+	0.43	(0.408,0.44]	chr6	282711	206	INTRON	INTRON	AFDN	ENSG00000130396.21	ENST00000683244.1:ENST00000400825.8:ENST00000351017.9:ENST00000344191.8:ENST00000392112.5:ENST00000392108.7:ENST00000400824.8:ENST00000400822.7:ENST00000447894.6:ENST00000366809.6:ENST00000366806.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	69	2	2.22819	2.61707	3.00595	0.00781452	0.00373083	0.0759016	0.0561984
chr1	100291893	100291990	172534	0	+	0.391753	(0.378,0.408]	chr1	18779	5	UTR3	UTR3:EXON_MRNA	RTCA	ENSG00000137996.13	ENST00000370128.9	protein_coding	protein_coding	protein_coding	protein_coding	8	127	2	2.22007	2.616745	3.01342	0.0022373	3.05889e-4	0.0435144	0.0161362
chr20	21317016	21317115	7248274	0	+	0.30303	(0.28,0.32]	chr20	735885	132	INTRON	INTRON	XRN2	ENSG00000088930.8	ENST00000377191.5	protein_coding	protein_coding	protein_coding	protein_coding	2	46	2	2.60656	2.6167100000000003	2.62686	0.0289217	0.0256827	0.133676	0.1274
chr17	57471095	57471194	6634907	0	+	0.575758	(0.57,1]	chr17	648057	260	INTRON	INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000674961.1:ENST00000582453.5:ENST00000675656.1:ENST00000322684.7:ENST00000442934.6:ENST00000579180.2:ENST00000579205.5:ENST00000579505.5:ENST00000582772.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	35	2	2.42282	2.616695	2.81057	0.00879576	0.00169295	0.0790073	0.0381936
chr22	50207406	50207503	7544078	0	+	0.56701	(0.515,0.57]	chr22	770979	5	INTRON	INTRON	SELENOO	ENSG00000073169.15	ENST00000380903.7:ENST00000492092.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	67	2	1.86208	2.616665	3.37125	0.0107937	0.00136343	0.0869599	0.0339121
chr2	38327703	38327803	1098846	0	-	0.54	(0.515,0.57]	chr2	117856	83	INTRON	INTRON	ATL2	ENSG00000119787.14	ENST00000378954.9:ENST00000406122.5:ENST00000405384.6:ENST00000402054.5:ENST00000419554.6:ENST00000651368.1:ENST00000452935.6:ENST00000449130.5:ENST00000443098.5:ENST00000456736.5:ENST00000474535.2:ENST00000472097.1:ENST00000451483.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	51	2	1.75372	2.6166549999999997	3.47959	0.0386904	8.38022e-4	0.14279	0.0263691
chr10	69024775	69024875	4444179	0	+	0.58	(0.57,1]	chr10	409984	79	INTRON	INTRON	KIFBP	ENSG00000198954.9	ENST00000635971.2:ENST00000636200.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	27	2	2.05026	2.61663	3.183	0.0321326	0.00254356	0.145026	0.0448135
chr11	118572750	118572850	4873083	0	+	0.66	(0.57,1]	chr11	455166	2	SS5_PROX	SS5_PROX:INTRON	ARCN1	ENSG00000095139.15	ENST00000392859.7:ENST00000264028.5:ENST00000359415.8:ENST00000534182.2	protein_coding	protein_coding	protein_coding	protein_coding	3	27	2	2.05026	2.61663	3.183	0.0321326	0.00254356	0.145026	0.0448135
chr7	22854202	22854280	3288681	0	+	0.666667	(0.57,1]	chr7	305420	2	EXON_LNCRNA	EXON_LNCRNA	SNHG26	ENSG00000228649.10	ENST00000415611.8:ENST00000667557.1:ENST00000422542.4:ENST00000656301.1:ENST00000661147.1:ENST00000656687.2:ENST00000662021.1:ENST00000691516.1:ENST00000685098.1:ENST00000689892.1:ENST00000663057.1:ENST00000657608.1:ENST00000688000.1:ENST00000690219.1:ENST00000658124.1	lncRNA	lncRNA	lncRNA	lncRNA	3	27	2	2.05026	2.61663	3.183	0.0321326	0.00254356	0.145026	0.0448135
chr10	124776777	124776876	4712396	0	-	0.292929	(0.28,0.32]	chr10	434817	16	INTRON	INTRON	EEF1AKMT2	ENSG00000203791.15	ENST00000652548.1:ENST00000466270.5:ENST00000368836.7:ENST00000464099.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	181	2	1.25611	2.616605	3.9771	0.0486002	6.5221e-6	0.153946	0.00180946
chr19	36481414	36481514	7174237	0	-	0.47	(0.44,0.476]	chr19	725015	44	INTRON	INTRON	ZNF566	ENSG00000186017.16	ENST00000493391.6:ENST00000392170.7:ENST00000452939.7:ENST00000427002.2:ENST00000424129.7:ENST00000434377.6:ENST00000472909.6:ENST00000460937.5:ENST00000480361.1:ENST00000494354.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	37	2	2.20949	2.616575	3.02366	0.0672585	0.00603307	0.183051	0.0700813
chr2	10123940	10124028	690723	0	+	0.375	(0.35,0.378]	chr2	81058	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	RRM2	ENSG00000171848.16	ENST00000641198.1:ENST00000360566.6:ENST00000459969.5:ENST00000652660.1:ENST00000641498.1:ENST00000304567.10:ENST00000491447.1:ENST00000615152.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	92	2	2.54421	2.616575	2.68894	0.00630238	0.00152848	0.0722266	0.0353936
chr3	122458839	122458938	1801051	0	-	0.444444	(0.44,0.476]	chr3	181001	6	INTRON	INTRON	KPNA1	ENSG00000114030.13	ENST00000344337.11:ENST00000470904.5:ENST00000466923.5:ENST00000485027.5:ENST00000494339.5:ENST00000465882.5:ENST00000464940.1:ENST00000482287.5:ENST00000476916.5:ENST00000493510.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	37	2	2.20949	2.616575	3.02366	0.0672585	0.00603307	0.183051	0.0700813
chr3	10045332	10045429	1362383	0	+	0.463918	(0.44,0.476]	chr3	143486	11	INTRON	INTRON	FANCD2	ENSG00000144554.13	ENST00000682647.1:ENST00000287647.7:ENST00000676013.1:ENST00000675286.1:ENST00000419585.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	20	298	2	2.41543	2.616535	2.81764	1.55281e-4	9.94671e-6	0.0113474	0.00229529
chr1	8798176	8798276	373590	0	-	0.49	(0.476,0.515]	chr1	43555	52	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000656437.1:ENST00000659924.1	protein_coding	protein_coding	protein_coding	protein_coding	7	100	2	1.90361	2.616465	3.32932	0.0102027	1.60666e-4	0.0850389	0.0109124
chr3	49091183	49091283	1692211	0	-	0.38	(0.378,0.408]	chr3	173166	37	INTRON	INTRON	QRICH1	ENSG00000198218.11	ENST00000395443.7:ENST00000357496.6:ENST00000424300.5:ENST00000411682.1:ENST00000450685.5:ENST00000437939.5:ENST00000430979.1	protein_coding	protein_coding	protein_coding	protein_coding	3	52	2	2.30628	2.616465	2.92665	0.0163339	0.0086017	0.101571	0.083729
chr5	138531172	138531271	2732549	0	-	0.393939	(0.378,0.408]	chr5	257415	11	INTRON	INTRON	ETF1	ENSG00000120705.13	ENST00000360541.10:ENST00000499810.6:ENST00000503014.5:ENST00000512198.1:ENST00000572514.5:ENST00000507939.5:ENST00000514005.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	52	2	2.30628	2.616465	2.92665	0.0163339	0.0086017	0.101571	0.083729
chr17	36588226	36588322	6602303	0	+	0.4375	(0.408,0.44]	chr17	642599	6	INTRON	INTRON	GGNBP2	ENSG00000278311.5	ENST00000613102.5:ENST00000620927.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	66	2	2.45003	2.61646	2.78289	0.00990006	0.0022785	0.0838372	0.0437013
chr12	56715286	56715383	5336130	0	-	0.350515	(0.35,0.378]	chr12	510227	7	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	NACA:ENSG00000285625	ENSG00000196531.14:ENSG00000285625.1	ENST00000678066.1:ENST00000679092.1:ENST00000546862.6:ENST00000678416.1:ENST00000678047.1:ENST00000454682.6:ENST00000550952.6:ENST00000550920.6:ENST00000678376.1:ENST00000356769.7:ENST00000393891.8:ENST00000552540.5:ENST00000676873.1:ENST00000548563.5:ENST00000548386.6:ENST00000546392.6:ENST00000547914.5:ENST00000549259.5:ENST00000551775.5:ENST00000552055.5:ENST00000549855.5:ENST00000551793.5:ENST00000551520.1:ENST00000548084.1:ENST00000647707.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	53	2	2.34278	2.616405	2.89003	0.0129593	0.0122391	0.0991015	0.0910127
chr12	65177802	65177902	5157195	0	+	0.37	(0.35,0.378]	chr12	488236	60	INTRON	INTRON	LEMD3	ENSG00000174106.3	ENST00000308330.3:ENST00000541171.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	53	2	2.34278	2.616405	2.89003	0.0129593	0.0122391	0.0991015	0.0910127
chr5	54111204	54111304	2618919	0	-	0.29	(0.28,0.32]	chr5	248841	353	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	115	2	2.38564	2.61639	2.84714	0.00310758	0.00230684	0.0498063	0.0440898
chr6	47580563	47580663	2874604	0	+	0.33	(0.32,0.35]	chr6	272775	3	SS3_PROX	SS3_PROX:INTRON	CD2AP	ENSG00000198087.7	ENST00000359314.5:ENST00000479857.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	57	2	2.19668	2.616325	3.03597	0.021398	0.00832487	0.123719	0.0774402
chr2	74206706	74206806	813311	0	+	0.56	(0.515,0.57]	chr2	90933	1	SS5_PROX	SS5_PROX:INTRON	MTHFD2	ENSG00000065911.13	ENST00000677997.1:ENST00000677170.1:ENST00000678684.1:ENST00000409804.5:ENST00000489041.2:ENST00000470592.5:ENST00000678955.1:ENST00000394053.7:ENST00000677377.1:ENST00000679055.1:ENST00000678340.1:ENST00000477455.5:ENST00000409601.1:ENST00000678228.1:ENST00000462026.2:ENST00000678623.1:ENST00000678731.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	77	2	2.34988	2.616275	2.88267	0.00194926	0.00152842	0.0410995	0.0353936
chr9	92270784	92270884	4287106	0	-	0.36	(0.35,0.378]	chr9	394210	4	SS5_PROX	SS5_PROX:INTRON	IARS1	ENSG00000196305.19	ENST00000375643.7:ENST00000443024.7:ENST00000447699.7:ENST00000683537.1:ENST00000684726.1:ENST00000683192.1:ENST00000683565.1:ENST00000682756.1:ENST00000684542.1:ENST00000683793.1:ENST00000683817.1:ENST00000682141.1:ENST00000682893.1:ENST00000684557.1:ENST00000498025.2:ENST00000682156.1:ENST00000627121.3:ENST00000683469.1:ENST00000683495.1:ENST00000682578.1:ENST00000682533.1:ENST00000472894.2:ENST00000684757.1:ENST00000684445.1:ENST00000683376.1:ENST00000683679.1:ENST00000683119.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	87	2	2.35402	2.6161849999999998	2.87835	0.00596483	0.00160563	0.0674604	0.0367961
chr20	21348619	21348709	7248610	0	+	0.377778	(0.35,0.378]	chr20	735964	2	SS5_PROX	SS5_PROX:INTRON	XRN2	ENSG00000088930.8	ENST00000377191.5	protein_coding	protein_coding	protein_coding	protein_coding	4	72	2	2.28125	2.61615	2.95105	0.0182271	0.00115843	0.107842	0.0313803
chr7	152327606	152327706	3680205	0	-	0.36	(0.35,0.378]	chr7	341641	119	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000684262.1:ENST00000682301.1:ENST00000452749.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	65	2	2.39519	2.6161399999999997	2.83709	0.01435	0.00401951	0.0966737	0.0578189
chr19	10674496	10674594	7013421	0	+	0.44898	(0.44,0.476]	chr19	696780	26	INTRON	INTRON	ILF3	ENSG00000129351.17	ENST00000449870.5:ENST00000587928.5:ENST00000407004.7:ENST00000589998.5:ENST00000589600.5:ENST00000590009.5:ENST00000587505.5:ENST00000589052.5:ENST00000250241.12:ENST00000590261.5:ENST00000588657.5:ENST00000592763.5:ENST00000587840.5:ENST00000589416.5:ENST00000585835.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	92	2	2.59632	2.61606	2.6358	0.00579248	5.12141e-4	0.0662959	0.0203407
chr16	89469167	89469267	6543388	0	-	0.37	(0.35,0.378]	chr16	634281	375	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	13	189	2	2.31014	2.6160550000000002	2.92197	5.30033e-4	2.45793e-4	0.0212515	0.0138815
chr2	61506369	61506468	1130897	0	-	0.515152	(0.476,0.515]	chr2	121597	37	INTRON	INTRON	XPO1	ENSG00000082898.19	ENST00000677110.1:ENST00000676553.1:ENST00000677556.1:ENST00000677814.1:ENST00000676771.1:ENST00000677803.1:ENST00000677239.1:ENST00000678790.1:ENST00000677928.1:ENST00000678182.1:ENST00000677150.1:ENST00000678172.1:ENST00000678360.1:ENST00000678081.1:ENST00000676889.1:ENST00000676783.1:ENST00000679035.1:ENST00000677422.1:ENST00000677417.1:ENST00000677813.1:ENST00000676999.1:ENST00000676667.1:ENST00000678263.1:ENST00000678877.1:ENST00000677933.1:ENST00000680228.1:ENST00000677289.1:ENST00000677190.1:ENST00000401558.7:ENST00000428210.5:ENST00000677290.1:ENST00000677850.1:ENST00000451765.6:ENST00000676789.1:ENST00000678741.1:ENST00000404992.6:ENST00000406957.5:ENST00000443240.5:ENST00000476585.5:ENST00000468259.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	137	2	2.27098	2.6160550000000002	2.96113	0.00215979	8.2239e-5	0.0417866	0.00761395
chr11	64162318	64162417	4964599	0	-	0.474747	(0.44,0.476]	chr11	467287	96	INTRON	INTRON	MACROD1	ENSG00000133315.12	ENST00000255681.7:ENST00000675777.1:ENST00000545464.5:ENST00000542359.5:ENST00000538595.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	37	2	2.49112	2.615875	2.74063	0.0315968	0.0176095	0.144381	0.105143
chr3	107538783	107538883	1469905	0	+	0.47	(0.44,0.476]	chr3	154137	120	INTRON	INTRON	BBX	ENSG00000114439.19	ENST00000415149.6:ENST00000402543.5:ENST00000325805.13:ENST00000485939.5:ENST00000427402.5:ENST00000416476.6:ENST00000454540.5:ENST00000449335.5:ENST00000431630.5:ENST00000458458.5:ENST00000456817.5:ENST00000456419.5:ENST00000402163.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	37	2	2.49112	2.615875	2.74063	0.0315968	0.0176095	0.144381	0.105143
chr9	91857471	91857571	4284337	0	-	0.45	(0.44,0.476]	chr9	393909	813	INTRON	INTRON	ROR2	ENSG00000169071.15	ENST00000375715.5:ENST00000375708.4:ENST00000550066.5:ENST00000495386.5:ENST00000546883.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	37	2	2.49112	2.615875	2.74063	0.0315968	0.0176095	0.144381	0.105143
chr5	88202468	88202566	2669064	0	-	0.27551	[0,0.28]	chr5	252633	35	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	TMEM161B	ENSG00000164180.14	ENST00000514135.5:ENST00000296595.11:ENST00000511087.5:ENST00000510089.5:ENST00000506536.5:ENST00000511218.5:ENST00000512429.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	71	2	2.1357	2.615785	3.09587	0.0338175	0.00651565	0.134476	0.0735232
chr2	3473401	3473500	686705	0	+	0.30303	(0.28,0.32]	chr2	80557	4	INTRON	INTRON	TRAPPC12	ENSG00000171853.16	ENST00000382110.6:ENST00000324266.10:ENST00000417243.5:ENST00000433382.5:ENST00000415624.5:ENST00000497597.5:ENST00000473348.5:ENST00000461577.5:ENST00000489032.5:ENST00000437733.5:ENST00000416918.5:ENST00000469400.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	102	2	2.38482	2.6157649999999997	2.84671	0.00641776	0.00216662	0.0695827	0.0434015
chr1	174874506	174874606	264297	0	+	0.35	(0.32,0.35]	chr1	30896	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	RABGAP1L	ENSG00000152061.24	ENST00000251507.8:ENST00000681986.1:ENST00000529145.6:ENST00000325589.9:ENST00000469553.6:ENST00000367687.5:ENST00000347255.6:ENST00000489615.5:ENST00000478442.5:ENST00000465412.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	59	2	2.38582	2.615755	2.84569	0.0138529	0.0121137	0.0962599	0.0953077
chr12	102369710	102369810	5207370	0	+	0.55	(0.515,0.57]	chr12	492881	1723	EXON_LNCRNA	EXON_LNCRNA:INTRON	HELLPAR:LINC02456	ENSG00000281344.1:ENSG00000283052.1	ENST00000626826.1:ENST00000635615.1	lncRNA	lncRNA	lncRNA	lncRNA	3	42	2	2.32836	2.615735	2.90311	0.0126662	0.0094233	0.0982897	0.0817766
chr3	170137960	170138060	1861387	0	-	0.53	(0.515,0.57]	chr3	186639	9	INTRON	INTRON	PHC3	ENSG00000173889.16	ENST00000495893.7:ENST00000494943.5:ENST00000467570.5:ENST00000484931.5:ENST00000479467.5:ENST00000466189.5:ENST00000475729.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	42	2	2.32836	2.615735	2.90311	0.0126662	0.0094233	0.0982897	0.0817766
chr21	44870580	44870679	7469097	0	-	0.353535	(0.35,0.378]	chr21	761251	46	INTRON	INTRON	PTTG1IP	ENSG00000183255.12	ENST00000397887.7:ENST00000445724.3:ENST00000330938.8:ENST00000494690.5:ENST00000480234.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	120	2	2.0239	2.61559	3.20728	0.0110441	6.89387e-5	0.0873897	0.00688351
chr11	10853557	10853656	4915726	0	-	0.40404	(0.378,0.408]	chr11	460633	7	CDS	CDS:EXON_MRNA:INTRON	ZBED5	ENSG00000236287.8	ENST00000525350.5:ENST00000533925.5:ENST00000432999.6:ENST00000413761.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	51	2	2.17608	2.61555	3.05502	0.0218783	0.00689519	0.123836	0.0717484
chr1	108296619	108296719	176601	0	+	0.33	(0.32,0.35]	chr1	19153	119	INTRON	INTRON	SLC25A24P1	ENSG00000241361.8	ENST00000411846.6:ENST00000434803.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	2	43	2	2.48693	2.61554	2.74415	0.0338094	0.0198267	0.146709	0.109608
chr2	47868186	47868286	1115740	0	-	0.59	(0.57,1]	chr2	119690	19	INTRON	INTRON	FBXO11	ENSG00000138081.22	ENST00000684712.1:ENST00000682451.1:ENST00000403359.8:ENST00000402508.5:ENST00000683894.1:ENST00000681999.1:ENST00000682975.1:ENST00000684085.1:ENST00000492225.5:ENST00000424163.2:ENST00000480038.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	57	2	2.49621	2.61541	2.73461	0.00209832	2.02023e-4	0.0413494	0.0124395
chr11	58581303	58581401	4793764	0	+	0.295918	(0.28,0.32]	chr11	443832	13	INTRON	INTRON	ZFP91	ENSG00000186660.15	ENST00000316059.7	protein_coding	protein_coding	protein_coding	protein_coding	6	96	2	2.03307	2.615405	3.19774	0.0062039	0.00548491	0.0716199	0.0648867
chr2	10334593	10334693	691947	0	+	0.32	(0.28,0.32]	chr2	81133	40	INTRON	INTRON	HPCAL1	ENSG00000115756.13	ENST00000423674.5:ENST00000307845.8:ENST00000381765.7:ENST00000419810.6:ENST00000622018.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	62	2	2.00989	2.615315	3.22074	0.0427801	0.00362783	0.148082	0.055479
chrX	154793083	154793182	7915487	0	-	0.333333	(0.32,0.35]	chrX	806172	4	INTRON	INTRON	MPP1	ENSG00000130830.15	ENST00000369534.8:ENST00000413259.7:ENST00000439370.5:ENST00000393531.5:ENST00000453245.5:ENST00000494170.1:ENST00000462825.5:ENST00000393529.5:ENST00000475943.5:ENST00000428488.1:ENST00000417435.5:ENST00000369531.1:ENST00000471821.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	14	249	2	2.46136	2.61524	2.76912	5.6886e-4	4.95141e-5	0.0220446	0.0057754
chr8	51883073	51883173	3946435	0	-	0.48	(0.476,0.515]	chr8	362040	123	INTRON	INTRON	PCMTD1	ENSG00000168300.14	ENST00000544451.2:ENST00000360540.9:ENST00000522514.6:ENST00000519559.1:ENST00000521344.1:ENST00000521046.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	68	2	2.17892	2.61522	3.05152	0.0064848	0.0046578	0.0699952	0.0629753
chr10	78037702	78037789	4475917	0	+	0.494253	(0.476,0.515]	chr10	411987	4	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPS24	ENSG00000138326.21	ENST00000613865.5:ENST00000435275.5:ENST00000645440.1:ENST00000440692.6:ENST00000360830.9:ENST00000372360.9:ENST00000464716.6:ENST00000485708.7:ENST00000478655.6:ENST00000645698.1:ENST00000476545.6:ENST00000465692.2:ENST00000482069.5:ENST00000645195.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	82	2	1.85394	2.61513	3.37632	0.00763096	0.00195267	0.0777238	0.0400465
chr10	21703302	21703401	4406123	0	+	0.40404	(0.378,0.408]	chr10	406537	63	INTRON	INTRON	MLLT10	ENSG00000078403.17	ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000651298.1:ENST00000377059.7:ENST00000651382.1:ENST00000438473.6:ENST00000420525.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	51	2	2.00398	2.614985	3.22599	0.0393906	0.00288652	0.143072	0.0494641
chr15	94915135	94915235	6105785	0	+	0.4	(0.378,0.408]	chr15	581682	102	INTRON	INTRON	ENSG00000277654	ENSG00000277654.6	ENST00000618611.4:ENST00000648065.1:ENST00000618377.1:ENST00000621842.4:ENST00000615751.4:ENST00000614581.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	3	51	2	2.00398	2.614985	3.22599	0.0393906	0.00288652	0.143072	0.0494641
chr5	181312829	181312929	2563727	0	+	0.38	(0.378,0.408]	chr5	245352	58	INTRON	INTRON	ENSG00000238035	ENSG00000238035.8	ENST00000499986.8	lncRNA	lncRNA	lncRNA	lncRNA	3	51	2	2.00398	2.614985	3.22599	0.0393906	0.00288652	0.143072	0.0494641
chr8	73866268	73866368	3972134	0	-	0.15	[0,0.28]	chr8	364247	354	INTRON	INTRON	ENSG00000258677:UBE2W	ENSG00000258677.2:ENSG00000104343.21	ENST00000358757.5:ENST00000602593.6:ENST00000517608.5:ENST00000650817.1:ENST00000422906.6:ENST00000419880.7:ENST00000651945.1:ENST00000519277.5:ENST00000519255.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	55	2	2.29142	2.61496	2.9385	0.0592143	0.0142776	0.189982	0.0963703
chr11	71934904	71935004	4823583	0	+	0.4	(0.378,0.408]	chr11	449902	54	INTRON	INTRON	RNF121	ENSG00000137522.18	ENST00000530058.5:ENST00000530655.5:ENST00000393711.7:ENST00000533380.5:ENST00000393713.7:ENST00000361756.8:ENST00000490867.5:ENST00000528683.5:ENST00000526549.5:ENST00000525243.5:ENST00000530137.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	51	2	2.05897	2.61493	3.17089	0.0339294	0.00357279	0.134508	0.0548435
chr3	28270760	28270860	1390839	0	+	0.38	(0.378,0.408]	chr3	145643	70	INTRON	INTRON	CMC1	ENSG00000187118.14	ENST00000477739.1:ENST00000423894.5:ENST00000466830.6:ENST00000334841.10:ENST00000418849.2:ENST00000396610.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	51	2	2.05897	2.61493	3.17089	0.0339294	0.00357279	0.134508	0.0548435
chr15	89617651	89617751	6097537	0	+	0.46	(0.44,0.476]	chr15	580358	1	SS3_PROX	SS3_PROX:INTRON	TICRR	ENSG00000140534.14	ENST00000268138.12:ENST00000560985.5	protein_coding	protein_coding	protein_coding	protein_coding	7	108	2	2.58397	2.61477	2.64557	0.00158432	6.72874e-4	0.0363089	0.023543
chr16	56684049	56684122	6359884	0	+	0.328767	(0.32,0.35]	chr16	610430	1	UTR3	UTR3:EXON_MRNA	MT1X	ENSG00000187193.9	ENST00000394485.5:ENST00000568370.1:ENST00000564974.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	35	423	2	2.15735	2.61469	3.07203	0.00109373	8.30144e-5	0.0304174	0.00766838
chr11	125608692	125608789	4882790	0	+	0.298969	(0.28,0.32]	chr11	456486	4	SS5_PROX	SS5_PROX:INTRON	STT3A	ENSG00000134910.14	ENST00000534472.5:ENST00000529196.5:ENST00000392708.9:ENST00000649491.1:ENST00000531491.5:ENST00000526726.1:ENST00000531001.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	111	2	1.54386	2.61465	3.68544	0.0227817	9.30275e-4	0.125323	0.0279637
chr6	35411914	35412013	2852674	0	+	0.484848	(0.476,0.515]	chr6	269505	3	INTRON	INTRON	PPARD	ENSG00000112033.14	ENST00000418635.6:ENST00000448077.6:ENST00000360694.8:ENST00000311565.4:ENST00000337400.6	protein_coding	protein_coding	protein_coding	protein_coding	3	49	2	1.92984	2.6146149999999997	3.29939	0.0466474	0.00211868	0.151522	0.0425644
chrX	302375	302473	7605482	0	+	0.428571	(0.408,0.44]	chrX	779420	32	UTR3	UTR3:EXON_MRNA	PLCXD1	ENSG00000182378.15	ENST00000399012.6:ENST00000381657.8	protein_coding	protein_coding	protein_coding	protein_coding	13	199	2	2.51095	2.614575	2.7182	2.91167e-4	7.95847e-5	0.0157666	0.00742553
chr7	10536503	10536602	3482144	0	-	0.313131	(0.28,0.32]	chr7	325766	834	INTRON	INTRON	MGC4859	ENSG00000283117.1	ENST00000634803.1	lncRNA	lncRNA	lncRNA	lncRNA	3	62	2	2.05458	2.614555	3.17453	0.0381508	0.00429297	0.141764	0.0599065
chr1	50777217	50777317	450422	0	-	0.46	(0.44,0.476]	chr1	54249	321	INTRON	INTRON	FAF1	ENSG00000185104.21	ENST00000396153.7:ENST00000487898.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	141	2	2.23392	2.6144749999999997	2.99503	8.39954e-4	2.98386e-4	0.0263691	0.0160416
chr2	20274899	20274999	1076008	0	-	0.26	[0,0.28]	chr2	114960	111	INTRON	INTRON	PUM2	ENSG00000055917.16	ENST00000338086.9:ENST00000361078.7:ENST00000440577.5	protein_coding	protein_coding	protein_coding	protein_coding	5	116	2	2.48772	2.614455	2.74119	0.0125761	0.00126858	0.0926667	0.0330485
chr20	17976103	17976203	7243285	0	+	0.44	(0.408,0.44]	chr20	735421	2	SS5_PROX	SS5_PROX:INTRON	MGME1	ENSG00000125871.14	ENST00000377710.10:ENST00000377709.1:ENST00000377704.4:ENST00000463219.1:ENST00000467391.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	80	2	2.00629	2.614435	3.2225799999999998	0.0189661	2.79412e-4	0.108861	0.0148832
chr1	32652506	32652561	65841	0	+	0.254545	[0,0.28]	chr1	8415	1	SS5_PROX	SS5_PROX:INTRON	RBBP4	ENSG00000162521.19	ENST00000414241.7:ENST00000527118.5:ENST00000373493.10:ENST00000401893.7:ENST00000524393.5:ENST00000492348.6:ENST00000526193.5:ENST00000525506.1:ENST00000373485.5:ENST00000477563.6:ENST00000458695.6:ENST00000490500.5:ENST00000445722.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	133	2	2.09204	2.6144	3.13676	0.0120948	7.59748e-4	0.0908218	0.0252954
chr1	17417046	17417146	384754	0	-	0.46	(0.44,0.476]	chr1	45464	4	SS3_PROX	SS3_PROX:INTRON	RCC2	ENSG00000179051.14	ENST00000375436.9:ENST00000375433.3	protein_coding	protein_coding	protein_coding	protein_coding	7	109	2	2.38634	2.61437	2.8424	0.0018045	6.35745e-4	0.039301	0.0231636
chr2	235532337	235532437	1041720	0	+	0.48	(0.476,0.515]	chr2	111222	74	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1:ENST00000402604.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	49	2	2.21677	2.61437	3.01197	0.0207026	0.00633162	0.110999	0.0722266
chr22	17639186	17639286	7475024	0	+	0.48	(0.476,0.515]	chr22	762151	3	SS5_PROX	SS5_PROX:INTRON	BCL2L13	ENSG00000099968.18	ENST00000399781.5:ENST00000399782.5:ENST00000337612.9:ENST00000418951.6:ENST00000538149.5:ENST00000543133.5:ENST00000611738.4:ENST00000616863.4:ENST00000618481.4:ENST00000498133.5:ENST00000317582.10:ENST00000464649.1:ENST00000493680.5:ENST00000355028.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	49	2	2.21677	2.61437	3.01197	0.0207026	0.00633162	0.110999	0.0722266
chrX	73948273	73948373	7682135	0	+	0.5	(0.476,0.515]	chrX	786618	5	INTRON	INTRON	JPX	ENSG00000225470.8	ENST00000664637.1:ENST00000639185.1:ENST00000655090.1:ENST00000640437.1:ENST00000660546.1:ENST00000667886.1:ENST00000660840.1:ENST00000657179.1:ENST00000670506.1:ENST00000657910.1:ENST00000662120.1:ENST00000671207.1:ENST00000659254.1:ENST00000656624.1:ENST00000667573.1:ENST00000660856.1:ENST00000660836.1:ENST00000668590.1:ENST00000658649.1:ENST00000414209.6:ENST00000654137.1:ENST00000670994.1:ENST00000653479.1:ENST00000602772.5:ENST00000655879.1:ENST00000657372.1:ENST00000657096.1:ENST00000602985.6:ENST00000670685.1:ENST00000670503.1:ENST00000663027.1:ENST00000654995.1:ENST00000602895.6:ENST00000654374.1:ENST00000660087.1:ENST00000665032.1:ENST00000671336.1:ENST00000671476.1:ENST00000667057.1:ENST00000670192.1:ENST00000670464.1:ENST00000665345.1:ENST00000661546.1:ENST00000662543.1:ENST00000602938.6:ENST00000664295.1:ENST00000654005.1:ENST00000669149.1:ENST00000659852.1:ENST00000656509.1:ENST00000602294.6:ENST00000667294.1:ENST00000663470.1:ENST00000602920.6:ENST00000671021.1:ENST00000659849.1:ENST00000667937.1:ENST00000661130.1:ENST00000654196.1:ENST00000655994.1:ENST00000659373.1:ENST00000662239.1:ENST00000670805.1:ENST00000656263.1:ENST00000653069.1:ENST00000657638.1:ENST00000653808.1:ENST00000653929.1:ENST00000653885.1:ENST00000659023.1:ENST00000602546.5:ENST00000664328.1:ENST00000659622.1:ENST00000671518.1:ENST00000670408.1	lncRNA	lncRNA	lncRNA	lncRNA	3	49	2	2.21677	2.61437	3.01197	0.0207026	0.00633162	0.110999	0.0722266
chr10	75222802	75222902	4464464	0	+	0.42	(0.408,0.44]	chr10	411843	4	SS5_PROX	SS5_PROX:INTRON	VDAC2	ENSG00000165637.14	ENST00000543351.5:ENST00000298468.9:ENST00000332211.11:ENST00000313132.8	protein_coding	protein_coding	protein_coding	protein_coding	5	80	2	2.30838	2.6143549999999998	2.92033	0.00547703	0.00162151	0.0671198	0.0367655
chr1	32792538	32792636	415911	0	-	0.377551	(0.35,0.378]	chr1	50188	9	INTRON	INTRON	YARS1	ENSG00000134684.13	ENST00000373477.9:ENST00000676297.1:ENST00000674654.1:ENST00000674629.1:ENST00000675785.2:ENST00000481895.6:ENST00000616261.2:ENST00000466052.1:ENST00000470377.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	69	2	2.53856	2.61428	2.69	0.0326077	0.00107271	0.133687	0.0300133
chr10	124784949	124785049	4712478	0	-	0.56	(0.515,0.57]	chr10	434817	98	INTRON	INTRON	EEF1AKMT2	ENSG00000203791.15	ENST00000652548.1:ENST00000466270.5:ENST00000368836.7:ENST00000464099.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	42	2	2.39351	2.61426	2.83501	0.0117686	0.0100431	0.0894475	0.0881096
chr10	124782159	124782258	4712450	0	-	0.444444	(0.44,0.476]	chr10	434817	70	INTRON	INTRON	EEF1AKMT2	ENSG00000203791.15	ENST00000652548.1:ENST00000466270.5:ENST00000368836.7:ENST00000464099.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	49	2	2.02558	2.61424	3.2029	0.0363567	0.00308681	0.138959	0.0510391
chr4	126529820	126529920	2236007	0	-	0.24	[0,0.28]	chr4	219023	643	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	2	52	2	2.27119	2.6142399999999997	2.95729	0.070351	0.0101824	0.184298	0.089002
chr5	28860333	28860433	2330353	0	+	0.24	[0,0.28]	chr5	225135	498	INTRON	INTRON	LINC02109	ENSG00000259786.7	ENST00000658190.1	lncRNA	lncRNA	lncRNA	lncRNA	2	52	2	2.27119	2.6142399999999997	2.95729	0.070351	0.0101824	0.184298	0.089002
chr17	6922266	6922366	6717426	0	-	0.46	(0.44,0.476]	chr17	658643	406	INTRON	INTRON	ALOX12-AS1	ENSG00000215067.11	ENST00000653385.1:ENST00000659418.1:ENST00000572385.5:ENST00000570562.5:ENST00000575889.5	lncRNA	lncRNA	lncRNA	lncRNA	8	125	2	2.55734	2.6142149999999997	2.67109	7.72402e-4	6.01994e-4	0.0255867	0.0226059
chr19	34266320	34266419	7051504	0	+	0.444444	(0.44,0.476]	chr19	703254	3	INTRON	INTRON	GARRE1	ENSG00000166398.14	ENST00000588470.5:ENST00000299505.8:ENST00000589583.5:ENST00000588338.6:ENST00000592124.1:ENST00000585833.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	49	2	2.08277	2.61418	3.14559	0.0309998	0.00384923	0.13151	0.0562562
chrX	154711728	154711828	7914923	0	-	0.47	(0.44,0.476]	chrX	806092	1	SS5_PROX	SS5_PROX:INTRON	GAB3	ENSG00000160219.12	ENST00000496390.5:ENST00000424127.3:ENST00000369575.7:ENST00000369568.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	49	2	2.08277	2.61418	3.14559	0.0309998	0.00384923	0.13151	0.0562562
chr6	29611775	29611867	3076301	0	-	0.336957	(0.32,0.35]	chr6	286052	4	INTRON	INTRON	GABBR1	ENSG00000204681.11	ENST00000355973.7:ENST00000472823.5:ENST00000377016.8:ENST00000377012.8:ENST00000377034.9:ENST00000491829.5:ENST00000494877.5:ENST00000489839.1:ENST00000376977.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	77	2	2.59855	2.614125	2.6297	0.00682041	0.00476699	0.0712518	0.0636201
chr7	121209122	121209222	3395860	0	+	0.38	(0.378,0.408]	chr7	317781	591	INTRON	INTRON	CPED1	ENSG00000106034.18	ENST00000310396.10:ENST00000450913.6:ENST00000423795.5:ENST00000466055.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	18	279	2	2.55428	2.614045	2.67381	1.80298e-4	2.08557e-5	0.0121877	0.00353198
chr7	156885970	156886070	3687946	0	-	0.43	(0.408,0.44]	chr7	342096	487	INTRON	INTRON	LMBR1	ENSG00000105983.23	ENST00000353442.10:ENST00000415428.5:ENST00000454132.5:ENST00000434503.5:ENST00000430278.5:ENST00000434278.5:ENST00000444719.5:ENST00000461469.5:ENST00000414218.1:ENST00000434453.1:ENST00000498034.5:ENST00000433968.5:ENST00000485985.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	50	2	2.26792	2.613995	2.96007	0.0179973	0.00753901	0.106756	0.0773151
chr17	1356728	1356827	6699166	0	-	0.414141	(0.408,0.44]	chr17	655527	20	INTRON	INTRON	YWHAE	ENSG00000108953.17	ENST00000264335.13:ENST00000466227.6:ENST00000571732.5:ENST00000573026.1:ENST00000496706.1:ENST00000573196.5:ENST00000575977.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	66	2	2.36185	2.613985	2.86612	0.0133164	0.00157924	0.094512	0.0366789
chr16	68104594	68104694	6370416	0	+	0.41	(0.408,0.44]	chr16	612188	150	INTRON	INTRON	ENSG00000261864:NFATC3	ENSG00000261864.1:ENSG00000072736.19	ENST00000548144.1:ENST00000563319.5:ENST00000569766.5:ENST00000553077.5:ENST00000566301.5:ENST00000549350.5:ENST00000566893.5:ENST00000575270.5:ENST00000561714.5:ENST00000346183.8:ENST00000568466.6:ENST00000539828.6:ENST00000562171.1:ENST00000349223.9:ENST00000329524.8:ENST00000379165.8:ENST00000562926.5:ENST00000570212.5:ENST00000563796.5:ENST00000567152.5:ENST00000563288.5:ENST00000535127.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA:processed_transcript	3	49	2	2.44674	2.6139799999999997	2.78122	0.015812	0.00868283	0.101453	0.0842798
chr19	39454316	39454415	7067947	0	+	0.434343	(0.408,0.44]	chr19	705820	4	INTRON	INTRON	SUPT5H	ENSG00000196235.14	ENST00000599117.5:ENST00000402194.6:ENST00000601515.5:ENST00000432763.7:ENST00000595368.5:ENST00000594729.5:ENST00000601978.1:ENST00000359191.10:ENST00000598725.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	62	2	2.57365	2.613925	2.6542	0.0227514	0.00172241	0.117618	0.0383099
chr20	62275891	62275991	7298570	0	+	0.43	(0.408,0.44]	chr20	742443	21	INTRON	INTRON	OSBPL2	ENSG00000130703.17	ENST00000622332.4:ENST00000439951.6:ENST00000644535.1:ENST00000358053.3:ENST00000313733.9:ENST00000645520.1:ENST00000642932.1:ENST00000642516.1:ENST00000643174.1:ENST00000644775.1:ENST00000645442.1:ENST00000646968.1:ENST00000646834.1:ENST00000643412.1:ENST00000645426.1:ENST00000644702.1:ENST00000644189.1:ENST00000643981.1:ENST00000642714.1:ENST00000618198.4:ENST00000448156.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	62	2	2.57365	2.613925	2.6542	0.0227514	0.00172241	0.117618	0.0383099
chr2	95866043	95866143	1178422	0	-	0.41	(0.408,0.44]	chr2	125761	56	INTRON	INTRON	ANKRD36C	ENSG00000174501.15	ENST00000295246.7:ENST00000456556.5:ENST00000531153.5:ENST00000534304.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	49	2	2.27464	2.6138000000000003	2.95296	0.0158016	0.00929354	0.109464	0.0817766
chr7	22688308	22688408	3500262	0	-	0.43	(0.408,0.44]	chr7	326683	229	INTRON	INTRON	STEAP1B	ENSG00000105889.16	ENST00000650428.1	protein_coding	processed_transcript	protein_coding	processed_transcript	3	49	2	2.27464	2.6138000000000003	2.95296	0.0158016	0.00929354	0.109464	0.0817766
chr8	140614286	140614386	4076353	0	-	0.42	(0.408,0.44]	chr8	370285	85	INTRON	INTRON	AGO2	ENSG00000123908.12	ENST00000220592.10:ENST00000519980.5:ENST00000523609.5:ENST00000517293.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	49	2	2.27464	2.6138000000000003	2.95296	0.0158016	0.00929354	0.109464	0.0817766
chr1	241636668	241636764	666498	0	-	0.260417	[0,0.28]	chr1	79093	2	INTRON	INTRON	OPN3:CHML	ENSG00000054277.14:ENSG00000203668.3	ENST00000366554.3:ENST00000490673.5:ENST00000469376.5:ENST00000463155.5:ENST00000478849.1:ENST00000366553.3:ENST00000638018.1:ENST00000638160.1:ENST00000638121.1:ENST00000636025.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	70	2	2.45042	2.61379	2.77716	0.022039	0.010819	0.115395	0.0920575
chr11	57805540	57805629	4793586	0	+	0.269663	[0,0.28]	chr11	443777	1	UTR5	UTR5:EXON_MRNA:SS3_PROX:INTRON	ENSG00000288534:CTNND1	ENSG00000288534.1:ENSG00000198561.16	ENST00000673781.1:ENST00000673810.1:ENST00000674116.1:ENST00000674060.1:ENST00000524630.5:ENST00000529919.5:ENST00000682741.1:ENST00000358694.10:ENST00000361332.8:ENST00000361391.10:ENST00000361796.9:ENST00000415361.6:ENST00000426142.6:ENST00000428599.6:ENST00000525902.5:ENST00000526357.5:ENST00000526772.5:ENST00000527467.5:ENST00000528232.5:ENST00000528621.5:ENST00000529526.5:ENST00000529873.5:ENST00000529986.5:ENST00000530094.5:ENST00000530748.5:ENST00000531014.5:ENST00000532245.5:ENST00000532463.5:ENST00000532649.5:ENST00000532787.5:ENST00000532844.5:ENST00000533667.5:ENST00000534579.5:ENST00000399050.10:ENST00000526938.5:ENST00000531007.2:ENST00000674015.1:ENST00000673826.1:ENST00000673683.1:ENST00000674106.1:ENST00000681984.1:ENST00000683906.1:ENST00000673661.1:ENST00000682621.1:ENST00000683201.1:ENST00000682974.1:ENST00000684035.1:ENST00000683510.1:ENST00000683769.1:ENST00000530720.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	70	2	2.45042	2.61379	2.77716	0.022039	0.010819	0.115395	0.0920575
chr3	48042502	48042602	1687036	0	-	0.34	(0.32,0.35]	chr3	172280	262	INTRON	INTRON	MAP4	ENSG00000047849.22	ENST00000395734.7:ENST00000426837.6:ENST00000360240.10:ENST00000423088.5:ENST00000439356.2:ENST00000468075.2	protein_coding	protein_coding	protein_coding	protein_coding	4	68	2	2.14793	2.61364	3.07935	0.0110079	0.00724137	0.0927187	0.0729826
chr7	121074882	121074981	3394505	0	+	0.343434	(0.32,0.35]	chr7	317706	102	INTRON	INTRON	CPED1	ENSG00000106034.18	ENST00000310396.10:ENST00000428526.5:ENST00000450913.6:ENST00000520801.5:ENST00000423795.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	68	2	2.14793	2.61364	3.07935	0.0110079	0.00724137	0.0927187	0.0729826
chr20	38927524	38927624	7272434	0	+	0.58	(0.57,1]	chr20	739054	2	INTRON	INTRON	FAM83D	ENSG00000101447.15	ENST00000619304.4:ENST00000619850.2	protein_coding	protein_coding	protein_coding	protein_coding	4	33	2	2.30825	2.61357	2.91889	0.00719009	0.00499769	0.0756118	0.0617433
chr18	1406486	1406586	6942257	0	-	0.54	(0.515,0.57]	chr18	686628	1	SS5_PROX	SS5_PROX:INTRON	LINC00470	ENSG00000132204.14	ENST00000657423.1:ENST00000657618.1:ENST00000669242.1:ENST00000660475.1:ENST00000653775.1:ENST00000661931.1:ENST00000412816.7:ENST00000667416.1:ENST00000661852.1:ENST00000661646.1:ENST00000667776.1:ENST00000654559.1:ENST00000661233.1:ENST00000653213.1:ENST00000659094.1:ENST00000660964.1:ENST00000577403.6:ENST00000669153.1:ENST00000657121.1:ENST00000655957.1:ENST00000659289.1:ENST00000665133.1:ENST00000671558.1:ENST00000666542.1:ENST00000669312.1:ENST00000581430.5:ENST00000658090.1:ENST00000667225.1:ENST00000582570.1	lncRNA	lncRNA	lncRNA	lncRNA	5	71	2	2.00468	2.61343	3.22218	0.0166344	2.98683e-4	0.110511	0.0160416
chrX	124040201	124040300	7717545	0	+	0.424242	(0.408,0.44]	chrX	789512	22	INTRON	INTRON	STAG2	ENSG00000101972.20	ENST00000218089.13:ENST00000455404.5:ENST00000483575.5:ENST00000687810.1:ENST00000687071.1:ENST00000469481.1:ENST00000371160.5:ENST00000435103.5:ENST00000687852.1:ENST00000371145.8:ENST00000692982.1:ENST00000371157.7:ENST00000691035.1:ENST00000686802.1:ENST00000691383.1:ENST00000686127.1:ENST00000371144.7:ENST00000458176.5:ENST00000466748.5:ENST00000471107.1:ENST00000428941.5:ENST00000435215.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	52	2	2.36073	2.6134250000000003	2.86612	0.0481658	0.00157924	0.153019	0.0366789
chr3	41212263	41212362	1403152	0	+	0.343434	(0.32,0.35]	chr3	147417	115	INTRON	INTRON	CTNNB1	ENSG00000168036.18	ENST00000643541.1:ENST00000426215.5:ENST00000645210.1:ENST00000646381.1:ENST00000405570.6:ENST00000642248.1:ENST00000433400.6:ENST00000642992.1:ENST00000431914.6:ENST00000642836.1:ENST00000396185.8:ENST00000642986.1:ENST00000644678.1:ENST00000643031.1:ENST00000396183.7:ENST00000645982.1:ENST00000453024.6:ENST00000645900.1:ENST00000647264.1:ENST00000646174.1:ENST00000643992.1:ENST00000642886.1:ENST00000647390.1:ENST00000643052.1:ENST00000488914.2:ENST00000349496.11:ENST00000642426.1:ENST00000646074.1:ENST00000645276.1:ENST00000644138.1:ENST00000646116.1:ENST00000644873.1:ENST00000643865.1:ENST00000644867.1:ENST00000646725.1:ENST00000645493.1:ENST00000646369.1:ENST00000643977.1:ENST00000647413.1:ENST00000644524.1:ENST00000645305.1:ENST00000643297.1:ENST00000450969.6:ENST00000642315.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	88	2	2.02448	2.61332	3.20216	0.00595393	0.00480708	0.0698475	0.0602209
chr16	66741737	66741837	6502135	0	-	0.34	(0.32,0.35]	chr16	629028	51	INTRON	INTRON	DYNC1LI2	ENSG00000135720.13	ENST00000258198.7:ENST00000443351.6:ENST00000440564.6:ENST00000566150.5:ENST00000568180.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	113	2	1.84045	2.613285	3.38612	0.00518711	0.00249604	0.0654097	0.0446195
chr1	19598642	19598739	40409	0	+	0.453608	(0.44,0.476]	chr1	4741	4	INTRON	INTRON	MICOS10	ENSG00000173436.15	ENST00000648702.1:ENST00000617872.4:ENST00000322753.7:ENST00000486890.5:ENST00000462646.5:ENST00000467029.5:ENST00000481464.5:ENST00000498642.5:ENST00000479642.1:ENST00000485362.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	79	2	2.07016	2.613275	3.15639	0.0151815	3.93757e-4	0.0994339	0.0178567
chr16	29577614	29577714	6471376	0	-	0.45	(0.44,0.476]	chr16	625297	79	INTRON	INTRON	ENSG00000288632:SMG1P2	ENSG00000288632.1:ENSG00000205534.6	ENST00000675579.1:ENST00000566127.1	lncRNA	lncRNA	lncRNA:transcribed_unprocessed_pseudogene	lncRNA:transcribed_unprocessed_pseudogene	5	79	2	2.07016	2.613275	3.15639	0.0151815	3.93757e-4	0.0994339	0.0178567
chr15	75400535	75400629	6223547	0	-	0.340426	(0.32,0.35]	chr15	594453	4	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SIN3A	ENSG00000169375.16	ENST00000394947.8:ENST00000360439.8:ENST00000394949.8	protein_coding	protein_coding	protein_coding	protein_coding	2	42	2	2.4458	2.613265	2.78073	0.0425977	0.01481	0.148082	0.106702
chr6	89804652	89804751	3161888	0	-	0.323232	(0.32,0.35]	chr6	294886	7	INTRON	INTRON	MDN1	ENSG00000112159.12	ENST00000369393.8:ENST00000629399.2:ENST00000439638.1	protein_coding	protein_coding	protein_coding	protein_coding	2	42	2	2.4458	2.613265	2.78073	0.0425977	0.01481	0.148082	0.106702
chr7	152189240	152189339	3678778	0	-	0.323232	(0.32,0.35]	chr7	341494	10	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000360104.8:ENST00000262189.11:ENST00000683200.1:ENST00000682283.1:ENST00000473186.5:ENST00000679882.1:ENST00000680969.1:ENST00000681033.1:ENST00000682176.1:ENST00000683159.1:ENST00000679645.1:ENST00000681635.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	42	2	2.4458	2.613265	2.78073	0.0425977	0.01481	0.148082	0.106702
chr7	121285476	121285576	3396632	0	+	0.33	(0.32,0.35]	chr7	317818	137	INTRON	INTRON	CPED1	ENSG00000106034.18	ENST00000310396.10	protein_coding	protein_coding	protein_coding	protein_coding	3	57	2	2.04237	2.6131450000000003	3.18392	0.0375542	0.00379806	0.140222	0.0562562
chr1	37684982	37685080	424628	0	-	0.408163	(0.378,0.408]	chr1	51394	9	INTRON	INTRON	C1orf109	ENSG00000116922.15	ENST00000494120.1:ENST00000486637.2:ENST00000358011.8:ENST00000464178.1:ENST00000464085.5:ENST00000491981.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	55	2	2.5938	2.6131349999999998	2.63247	0.0215745	0.00614976	0.123836	0.0676501
chr10	125156934	125157034	4714307	0	-	0.5	(0.476,0.515]	chr10	434933	188	INTRON	INTRON	CTBP2	ENSG00000175029.17	ENST00000337195.9:ENST00000411419.6:ENST00000494626.6:ENST00000531469.5:ENST00000460976.5:ENST00000476817.1:ENST00000530884.1:ENST00000467395.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	38	2	2.28264	2.6130699999999996	2.9435	0.0534132	0.00929849	0.179876	0.0817766
chr22	19141564	19141658	7552142	0	-	0.489362	(0.476,0.515]	chr22	771945	12	INTRON	INTRON	ESS2	ENSG00000100056.12	ENST00000252137.11:ENST00000434568.5:ENST00000472073.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	38	2	2.28264	2.6130699999999996	2.9435	0.0534132	0.00929849	0.179876	0.0817766
chr10	75221370	75221470	4464449	0	+	0.54	(0.515,0.57]	chr10	411837	4	SS5_PROX	SS5_PROX:INTRON	VDAC2	ENSG00000165637.14	ENST00000543351.5:ENST00000298468.9:ENST00000472137.5:ENST00000332211.11:ENST00000313132.8:ENST00000498394.5:ENST00000447677.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	32	2	2.23915	2.61296	2.98677	0.0596178	0.00632549	0.16883600000000001	0.0722266
chr2	74209110	74209202	813341	0	+	0.521739	(0.515,0.57]	chr2	90950	2	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	MTHFD2	ENSG00000065911.13	ENST00000677997.1:ENST00000677170.1:ENST00000678684.1:ENST00000409804.5:ENST00000489041.2:ENST00000470592.5:ENST00000678955.1:ENST00000394053.7:ENST00000677377.1:ENST00000679055.1:ENST00000678340.1:ENST00000409601.1:ENST00000678228.1:ENST00000462026.2:ENST00000678623.1:ENST00000678731.1:ENST00000677299.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	32	2	2.23915	2.61296	2.98677	0.0596178	0.00632549	0.16883600000000001	0.0722266
chr9	122904709	122904809	4338629	0	-	0.52	(0.515,0.57]	chr9	398792	2	SS5_PROX	SS5_PROX:INTRON	RC3H2	ENSG00000056586.16	ENST00000357244.7:ENST00000498479.5:ENST00000423239.6:ENST00000335387.9:ENST00000478216.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	32	2	2.23915	2.61296	2.98677	0.0596178	0.00632549	0.16883600000000001	0.0722266
chrX	124051594	124051694	7717666	0	+	0.55	(0.515,0.57]	chrX	789546	2	SS5_PROX	SS5_PROX:INTRON	STAG2	ENSG00000101972.20	ENST00000218089.13:ENST00000455404.5:ENST00000483575.5:ENST00000687810.1:ENST00000687071.1:ENST00000469481.1:ENST00000371160.5:ENST00000687852.1:ENST00000371145.8:ENST00000692982.1:ENST00000371157.7:ENST00000691035.1:ENST00000686802.1:ENST00000691383.1:ENST00000686127.1:ENST00000371144.7:ENST00000466748.5:ENST00000471107.1:ENST00000693144.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	32	2	2.23915	2.61296	2.98677	0.0596178	0.00632549	0.16883600000000001	0.0722266
chr16	87830022	87830120	6538688	0	-	0.408163	(0.378,0.408]	chr16	633592	1	UTR3	UTR3:EXON_MRNA	SLC7A5	ENSG00000103257.9	ENST00000261622.5:ENST00000565644.5	protein_coding	protein_coding	protein_coding	protein_coding	3	51	2	1.94681	2.61294	3.27907	0.0457723	0.0023379	0.149888	0.0442989
chr6	111001379	111001478	2939498	0	+	0.555556	(0.515,0.57]	chr6	276871	12	INTRON	INTRON	RPF2	ENSG00000197498.13	ENST00000368864.8:ENST00000441448.7:ENST00000607388.1:ENST00000425871.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	112	2	2.07244	2.61293	3.15342	0.00293638	6.53448e-5	0.0483234	0.00669181
chr9	135943851	135943947	4372385	0	-	0.4375	(0.408,0.44]	chr9	402520	12	INTRON	INTRON	UBAC1	ENSG00000130560.9	ENST00000371756.4:ENST00000489050.5:ENST00000465873.5:ENST00000471163.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	161	2	2.17429	2.612835	3.05138	6.12017e-4	2.31493e-4	0.0223951	0.0139549
chr3	177160770	177160870	1872079	0	-	0.49	(0.476,0.515]	chr3	187424	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	TBL1XR1	ENSG00000177565.18	ENST00000457928.7:ENST00000430069.5:ENST00000673974.1:ENST00000352800.10:ENST00000422442.6:ENST00000428970.5:ENST00000424913.5:ENST00000437738.5:ENST00000431421.5:ENST00000635794.1:ENST00000630796.2:ENST00000450267.5:ENST00000630833.2:ENST00000431674.5:ENST00000422066.5:ENST00000443315.5:ENST00000627825.2:ENST00000427349.5:ENST00000413084.5:ENST00000637137.1:ENST00000491623.2:ENST00000637544.1:ENST00000636187.1:ENST00000636912.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	16	222	2	2.21096	2.612805	3.01465	3.06605e-4	4.2183e-5	0.015646	0.00551568
chr1	23066962	23067060	44246	0	+	0.387755	(0.378,0.408]	chr1	5300	5	INTRON	INTRON	KDM1A	ENSG00000004487.18	ENST00000692214.1:ENST00000686934.1:ENST00000689853.1:ENST00000465864.2:ENST00000691256.1:ENST00000688122.1:ENST00000692056.1:ENST00000692853.1:ENST00000689366.1:ENST00000686270.1:ENST00000685102.1:ENST00000690627.1:ENST00000686771.1:ENST00000692209.1:ENST00000686339.1:ENST00000691813.1:ENST00000693156.1:ENST00000688235.1:ENST00000692975.1:ENST00000687202.1:ENST00000691682.1:ENST00000691404.1:ENST00000691694.1:ENST00000688680.1:ENST00000356634.7:ENST00000400181.9:ENST00000689677.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	51	2	2.11194	2.6127700000000003	3.1136	0.0292534	0.00443339	0.128055	0.061054
chr17	63745540	63745636	6811685	0	-	0.395833	(0.378,0.408]	chr17	673131	4	UTR3	UTR3:EXON_MRNA	CCDC47	ENSG00000108588.15	ENST00000225726.10	protein_coding	protein_coding	protein_coding	protein_coding	3	51	2	2.11194	2.6127700000000003	3.1136	0.0292534	0.00443339	0.128055	0.061054
chr4	169681027	169681126	2080487	0	+	0.454545	(0.44,0.476]	chr4	205626	4	INTRON	INTRON	CLCN3	ENSG00000109572.15	ENST00000511092.5:ENST00000347613.8:ENST00000360642.7:ENST00000512813.5:ENST00000513761.6:ENST00000613795.4:ENST00000507875.5	protein_coding	protein_coding	protein_coding	protein_coding	4	59	2	1.87325	2.6127599999999997	3.35227	0.0265709	0.0022005699999999998	0.134088	0.0417893
chr6	8434184	8434284	3055105	0	-	0.34	(0.32,0.35]	chr6	284213	4	SS5_PROX	SS5_PROX:INTRON	SLC35B3	ENSG00000124786.12	ENST00000644923.2:ENST00000649788.1:ENST00000648987.1:ENST00000379660.4:ENST00000648867.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	78	2	2.02327	2.612715	3.20216	0.00956045	0.00480708	0.0863913	0.0602209
chr7	151095334	151095433	3448440	0	+	0.585859	(0.57,1]	chr7	322165	44	INTRON	INTRON	AGAP3	ENSG00000133612.19	ENST00000490097.5:ENST00000463381.5:ENST00000397238.7:ENST00000622464.4:ENST00000479901.5:ENST00000473312.5:ENST00000469901.5:ENST00000476375.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	71	2	2.32807	2.612635	2.8972	9.96313e-4	6.94474e-5	0.0288906	0.00690574
chr17	37216851	37216950	6761101	0	-	0.434343	(0.408,0.44]	chr17	664773	60	INTRON	INTRON	ACACA	ENSG00000278540.5	ENST00000616317.5:ENST00000614428.4:ENST00000612895.4:ENST00000617649.4:ENST00000614450.4:ENST00000612120.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	76	2	1.50652	2.6126300000000002	3.71874	0.0410276	3.17998e-4	0.1451	0.0159645
chr6	98898567	98898667	3165087	0	-	0.4	(0.378,0.408]	chr6	295187	176	INTRON	INTRON	FBXL4	ENSG00000112234.9	ENST00000369244.7:ENST00000229971.2	protein_coding	protein_coding	protein_coding	protein_coding	4	68	2	2.43657	2.61262	2.78867	0.0106733	0.00226991	0.0861859	0.0437013
chr22	20101184	20101284	7478448	0	+	0.43	(0.408,0.44]	chr22	762741	60	INTRON	INTRON	DGCR8	ENSG00000128191.16	ENST00000383024.6:ENST00000351989.8:ENST00000495826.5:ENST00000407755.1:ENST00000498171.5:ENST00000491892.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	125	2	2.45732	2.6125	2.76768	9.43743e-4	6.71664e-4	0.028105	0.0235155
chr8	116745876	116745976	4034133	0	-	0.48	(0.476,0.515]	chr8	368079	82	INTRON	INTRON	EIF3H	ENSG00000147677.12	ENST00000521861.6:ENST00000276682.8:ENST00000518949.5:ENST00000518995.5:ENST00000522800.5:ENST00000518034.5:ENST00000517974.1:ENST00000522453.1:ENST00000519046.5:ENST00000520813.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	74	2	1.65426	2.61233	3.5704	0.0231344	8.75056e-4	0.126939	0.0270926
chr20	47315172	47315272	7349095	0	-	0.59	(0.57,1]	chr20	749342	46	INTRON	INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000468376.2:ENST00000435836.5:ENST00000446894.5:ENST00000441977.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	32	2	2.09207	2.612305	3.13254	0.0121228	0.00310655	0.090965	0.0512344
chr16	89440412	89440512	6543100	0	-	0.45	(0.44,0.476]	chr16	634281	87	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	59	2	1.81283	2.612295	3.41176	0.0343005	0.00130987	0.135641	0.0333932
chr5	311677	311768	2313025	0	+	0.461538	(0.44,0.476]	chr5	223728	4	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	PDCD6	ENSG00000249915.9	ENST00000614778.4:ENST00000618970.4:ENST00000513582.5:ENST00000264933.9:ENST00000505221.5:ENST00000507528.5:ENST00000505526.1:ENST00000507473.1:ENST00000511482.1:ENST00000512466.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	59	2	1.81283	2.612295	3.41176	0.0343005	0.00130987	0.135641	0.0333932
chr5	159162931	159163005	2758715	0	-	0.378378	(0.378,0.408]	chr5	260323	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RNF145	ENSG00000145860.12	ENST00000424310.7:ENST00000519865.5:ENST00000274542.6:ENST00000611185.4:ENST00000521606.6:ENST00000518802.5:ENST00000520638.1:ENST00000518062.1:ENST00000521266.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	68	2	2.39444	2.612055	2.82967	0.0122858	0.00189968	0.091087	0.0402736
chr6	68650729	68650829	2886473	0	+	0.3	(0.28,0.32]	chr6	273730	109	INTRON	INTRON	ADGRB3	ENSG00000135298.15	ENST00000370598.6:ENST00000684661.1:ENST00000546190.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	121	2	1.86825	2.612	3.35575	0.017708	3.85748e-4	0.11319	0.0182738
chr2	69941457	69941556	805777	0	+	0.40404	(0.378,0.408]	chr2	89939	33	UTR3	UTR3:EXON_MRNA:INTRON	MXD1	ENSG00000059728.11	ENST00000540449.5:ENST00000264444.7:ENST00000465446.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	68	2	2.47752	2.61199	2.74646	0.0092831	0.00271684	0.0817766	0.0481064
chr21	42904776	42904875	7411452	0	+	0.454545	(0.44,0.476]	chr21	755308	1	INTRON	INTRON	NDUFV3	ENSG00000160194.18	ENST00000460259.1:ENST00000340344.4:ENST00000354250.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	81	2	1.57262	2.611985	3.65135	0.0230575	6.34922e-4	0.126603	0.023163
chr19	909997	910096	7110906	0	-	0.50505	(0.476,0.515]	chr19	714174	70	INTRON	INTRON	R3HDM4	ENSG00000198858.10	ENST00000589428.5:ENST00000361574.10:ENST00000587975.2:ENST00000590454.2:ENST00000589445.1:ENST00000626716.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	79	2	2.4132	2.61198	2.81076	0.00417094	0.00203568	0.0570595	0.0417667
chr8	123376359	123376458	4042439	0	-	0.494949	(0.476,0.515]	chr8	368782	33	INTRON	INTRON	ATAD2	ENSG00000156802.13	ENST00000287394.10:ENST00000517666.5:ENST00000521903.5:ENST00000519124.5:ENST00000521496.5:ENST00000530065.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	79	2	2.4132	2.61198	2.81076	0.00417094	0.00203568	0.0570595	0.0417667
chr12	42358560	42358658	5118551	0	+	0.387755	(0.378,0.408]	chr12	482945	30	INTRON	INTRON	PPHLN1	ENSG00000134283.18	ENST00000549190.5:ENST00000337898.10:ENST00000395580.7:ENST00000610488.4:ENST00000619544.4:ENST00000613154.4:ENST00000551723.5:ENST00000552429.5:ENST00000395568.6:ENST00000256678.12:ENST00000358314.12:ENST00000449194.6:ENST00000552761.5:ENST00000551406.5:ENST00000317560.13:ENST00000432191.6:ENST00000552202.5:ENST00000550535.5:ENST00000546750.5:ENST00000547847.1:ENST00000552794.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	143	2	2.5964	2.611945	2.62749	8.24763e-4	3.17768e-4	0.026553	0.0159645
chr4	169721820	169721917	2080903	0	+	0.453608	(0.44,0.476]	chr4	205690	19	UTR3	UTR3:EXON_MRNA	CLCN3	ENSG00000109572.15	ENST00000513761.6:ENST00000613795.4	protein_coding	protein_coding	protein_coding	protein_coding	10	154	2	2.51353	2.6118699999999997	2.71021	4.18963e-4	3.42549e-4	0.0189528	0.0164987
chrX	119789507	119789607	7873952	0	-	0.41	(0.408,0.44]	chrX	801868	2	SS5_PROX	SS5_PROX:INTRON	RPL39	ENSG00000198918.8	ENST00000361575.4:ENST00000468844.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	103	2	2.49983	2.611835	2.72384	0.00713527	4.77241e-4	0.0756118	0.0202392
chr2	27595174	27595274	718055	0	+	0.34	(0.32,0.35]	chr2	83352	111	INTRON	INTRON	ZNF512	ENSG00000243943.10	ENST00000413371.6:ENST00000416005.6:ENST00000556601.5:ENST00000379717.5:ENST00000355467.6:ENST00000494548.1:ENST00000461705.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	42	2	2.37794	2.611815	2.84569	0.0498601	0.0121137	0.156383	0.0962599
chr8	100714671	100714768	4005514	0	-	0.391753	(0.378,0.408]	chr8	366609	10	INTRON	INTRON	PABPC1	ENSG00000070756.17	ENST00000677140.1:ENST00000677787.1:ENST00000678709.1:ENST00000676662.1:ENST00000677765.1:ENST00000677892.1:ENST00000522720.2:ENST00000520804.2:ENST00000521865.6:ENST00000677478.1:ENST00000677380.1:ENST00000520142.2:ENST00000677775.1:ENST00000678954.1:ENST00000676655.1:ENST00000676976.1:ENST00000318607.10:ENST00000679197.1:ENST00000519100.6:ENST00000519004.5:ENST00000522387.5:ENST00000522658.6:ENST00000678822.1:ENST00000523555.6:ENST00000610907.2:ENST00000519596.5:ENST00000519622.5:ENST00000517921.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	148	2	2.57351	2.6118	2.65009	7.32287e-4	3.89159e-4	0.0246502	0.0183958
chr6	24719359	24719459	3070731	0	-	0.53	(0.515,0.57]	chr6	285371	1	SS5_PROX	SS5_PROX:INTRON	C6orf62	ENSG00000112308.13	ENST00000378102.3	protein_coding	protein_coding	protein_coding	protein_coding	41	486	2	2.20902	2.6117850000000002	3.01455	2.96338e-5	6.42807e-7	0.00432966	4.73774e-4
chr4	55610374	55610473	2150437	0	-	0.515152	(0.476,0.515]	chr4	211629	8	INTRON	INTRON	NMU	ENSG00000109255.11	ENST00000511469.5:ENST00000264218.7:ENST00000505262.5:ENST00000507338.1:ENST00000515325.5:ENST00000509371.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	78	2	2.48789	2.611765	2.73564	0.00333144	0.00256502	0.0512081	0.0466761
chr20	53585365	53585465	7358400	0	-	0.42	(0.408,0.44]	chr20	750309	18	INTRON	INTRON	ZNF217	ENSG00000171940.14	ENST00000371471.7:ENST00000431687.5:ENST00000540425.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	125	2	2.58583	2.611655	2.63748	9.38868e-4	5.0683e-4	0.0280776	0.0202328
chr15	58677370	58677467	6192786	0	-	0.329897	(0.32,0.35]	chr15	589958	7	INTRON	INTRON	ADAM10	ENSG00000137845.15	ENST00000260408.8:ENST00000402627.5:ENST00000561288.1:ENST00000396136.6:ENST00000559053.1:ENST00000558733.5:ENST00000439637.5:ENST00000497846.5:ENST00000558004.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	42	2	2.51061	2.61165	2.71269	0.0364463	0.0181461	0.138959	0.114853
chr7	107301845	107301945	3610398	0	-	0.34	(0.32,0.35]	chr7	336666	31	INTRON	INTRON	COG5	ENSG00000164597.15	ENST00000297135.9:ENST00000347053.8:ENST00000393603.7	protein_coding	protein_coding	protein_coding	protein_coding	2	42	2	2.51061	2.61165	2.71269	0.0364463	0.0181461	0.138959	0.114853
chr6	7221382	7221482	2799509	0	+	0.62	(0.57,1]	chr6	263772	24	INTRON	INTRON	RREB1	ENSG00000124782.21	ENST00000379933.7:ENST00000379938.7:ENST00000349384.10:ENST00000334984.10:ENST00000483150.1	protein_coding	protein_coding	protein_coding	protein_coding	6	51	2	2.32017	2.6116	2.9030300000000002	0.00488159	2.31233e-4	0.0640618	0.0139514
chr4	26348660	26348759	1936951	0	+	0.323232	(0.32,0.35]	chr4	194362	35	INTRON	INTRON	RBPJ	ENSG00000168214.22	ENST00000512351.5:ENST00000681799.1:ENST00000681403.1:ENST00000342295.6:ENST00000512671.6:ENST00000506956.5:ENST00000345843.8:ENST00000361572.10:ENST00000514380.5:ENST00000514807.5:ENST00000348160.9:ENST00000681506.1:ENST00000509158.6:ENST00000691085.1:ENST00000692303.1:ENST00000681856.1:ENST00000513182.5:ENST00000681025.1:ENST00000681679.1:ENST00000680210.1:ENST00000355476.8:ENST00000680140.1:ENST00000511401.5:ENST00000680511.1:ENST00000510778.7:ENST00000679698.1:ENST00000679469.1:ENST00000681484.1:ENST00000505958.6:ENST00000507561.5:ENST00000514730.5:ENST00000507574.5:ENST00000514675.5:ENST00000515573.5:ENST00000689192.1:ENST00000680928.1:ENST00000681260.1:ENST00000681093.1:ENST00000504423.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	57	2	1.94202	2.611545	3.28107	0.0486128	0.00262488	0.153946	0.0470772
chr5	69104142	69104240	2379684	0	+	0.520408	(0.515,0.57]	chr5	229069	2	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	SLC30A5	ENSG00000145740.20	ENST00000380860.8:ENST00000396591.8:ENST00000504103.5:ENST00000502979.1:ENST00000507354.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	77	2	2.16051	2.61145	3.06239	0.0046825	6.62949e-4	0.0631419	0.0234815
chr11	2952097	2952193	4891575	0	-	0.416667	(0.408,0.44]	chr11	458280	4	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	NAP1L4	ENSG00000205531.13	ENST00000620138.4:ENST00000380542.9:ENST00000469805.5:ENST00000526115.5:ENST00000492594.6:ENST00000492685.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	91	2	2.09818	2.61138	3.12458	0.00772939	4.61817e-4	0.0757122	0.0194611
chr2	61275064	61275164	1128543	0	-	0.48	(0.476,0.515]	chr2	121280	85	INTRON	INTRON	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000472706.5:ENST00000453734.1:ENST00000484179.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	67	2	1.68907	2.611345	3.53362	0.0296007	0.00102391	0.142135	0.029231300000000002
chrX	134426022	134426121	7724039	0	+	0.373737	(0.35,0.378]	chrX	790147	8	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	PHF6	ENSG00000156531.18	ENST00000687496.1:ENST00000685553.1:ENST00000625464.2:ENST00000370803.8:ENST00000332070.7:ENST00000691812.1:ENST00000688598.1:ENST00000693759.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	81	2	1.85092	2.611335	3.37175	0.0114682	0.00236696	0.0956037	0.043778
chr12	49271952	49272052	5132796	0	+	0.46	(0.44,0.476]	chr12	483883	3	SS3_PROX	SS3_PROX:INTRON	TUBA1C	ENSG00000167553.17	ENST00000541364.5:ENST00000552448.1:ENST00000301072.11:ENST00000548470.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	24	294	2	1.92481	2.6112849999999996	3.29776	8.61241e-4	9.44593e-6	0.0267849	0.00222322
chr22	49625798	49625889	7602344	0	-	0.56044	(0.515,0.57]	chr22	778588	5	INTRON	INTRON	MIR3667HG	ENSG00000188511.13	ENST00000414287.5:ENST00000416411.1:ENST00000689875.1:ENST00000400023.5:ENST00000405854.5:ENST00000444628.2	lncRNA	lncRNA	lncRNA	lncRNA	6	77	2	2.02107	2.61124	3.20141	0.00910188	2.65803e-4	0.0809976	0.0144243
chrX	24078327	24078424	7630980	0	+	0.360825	(0.35,0.378]	chrX	781497	17	UTR3	UTR3:EXON_MRNA	EIF2S3	ENSG00000130741.11	ENST00000253039.9	protein_coding	protein_coding	protein_coding	protein_coding	38	649	2	2.32379	2.61117	2.89855	5.21877e-5	3.75694e-6	0.00590253	0.00139494
chr1	165828731	165828831	243760	0	+	0.5	(0.476,0.515]	chr1	29139	4	INTRON	INTRON	UCK2	ENSG00000143179.16	ENST00000367879.9:ENST00000642653.1	protein_coding	protein_coding	protein_coding	protein_coding	4	61	2	2.21025	2.61111	3.01197	0.00913757	0.00633162	0.0812335	0.0722266
chr1	2242522	2242621	2308	0	+	0.474747	(0.44,0.476]	chr1	553	95	INTRON	INTRON	SKI	ENSG00000157933.10	ENST00000378536.5:ENST00000508416.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	150	2	2.07687	2.6110249999999997	3.14518	0.00351056	2.57163e-5	0.0525467	0.00399377
chr1	153899182	153899282	557529	0	-	0.44	(0.408,0.44]	chr1	65994	2	SS3_PROX	SS3_PROX:INTRON	GATAD2B	ENSG00000143614.10	ENST00000368655.5:ENST00000634544.1:ENST00000634408.1:ENST00000634401.1:ENST00000634791.1:ENST00000637331.1:ENST00000636008.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	121	2	2.08282	2.610965	3.13911	0.0051355	8.84265e-5	0.062965	0.00791674
chr11	65497984	65498083	4806123	0	+	0.434343	(0.408,0.44]	chr11	446569	4	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	MALAT1	ENSG00000251562.9	ENST00000619449.2:ENST00000534336.1:ENST00000688218.1:ENST00000689729.1:ENST00000693503.1:ENST00000692086.1:ENST00000685846.1:ENST00000690116.1	lncRNA	lncRNA	lncRNA	lncRNA	13	201	2	2.24279	2.6109549999999997	2.97912	0.00167853	7.95633e-6	0.0370386	0.0020223
chr10	21704598	21704697	4406136	0	+	0.313131	(0.28,0.32]	chr10	406537	76	INTRON	INTRON	MLLT10	ENSG00000078403.17	ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000651298.1:ENST00000377059.7:ENST00000651382.1:ENST00000438473.6:ENST00000420525.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	62	2	2.59504	2.61095	2.62686	0.0289217	0.00582473	0.1274	0.0687439
chr4	2491693	2491791	1912053	0	+	0.5	(0.476,0.515]	chr4	191927	8	INTRON	INTRON	RNF4	ENSG00000063978.16	ENST00000503659.5:ENST00000504224.5:ENST00000541204.5:ENST00000502316.5:ENST00000509388.5:ENST00000507247.5:ENST00000314289.13:ENST00000511843.5:ENST00000509258.5:ENST00000513284.5:ENST00000507784.5:ENST00000513578.5:ENST00000511859.5:ENST00000511892.5:ENST00000513643.5:ENST00000503123.5:ENST00000509206.1:ENST00000506706.5:ENST00000511600.5:ENST00000513450.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	66	2	2.21677	2.61092	3.00507	0.0207026	8.38796e-4	0.110999	0.0263691
chr2	95864552	95864651	1178407	0	-	0.292929	(0.28,0.32]	chr2	125761	41	INTRON	INTRON	ANKRD36C	ENSG00000174501.15	ENST00000295246.7:ENST00000456556.5:ENST00000531153.5:ENST00000534304.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	86	2	1.64082	2.61091	3.581	0.0422774	8.63544e-4	0.148082	0.0266494
chr1	45592254	45592351	93282	0	+	0.536082	(0.515,0.57]	chr1	12572	6	INTRON	INTRON	NASP	ENSG00000132780.17	ENST00000437901.6:ENST00000537798.5:ENST00000437362.6:ENST00000350030.8:ENST00000464190.6:ENST00000527359.5:ENST00000528084.5:ENST00000453748.5:ENST00000525515.5:ENST00000527470.5:ENST00000529333.5:ENST00000531532.5:ENST00000530840.5:ENST00000528238.5:ENST00000534101.1:ENST00000470768.5:ENST00000372052.8:ENST00000351223.7:ENST00000629893.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	102	2	2.27116	2.61088	2.9506	0.00601759	9.37882e-5	0.0700813	0.00860621
chr12	111884168	111884268	5229160	0	+	0.6	(0.57,1]	chr12	495688	4	SS5_PROX	SS5_PROX:INTRON	MAPKAPK5	ENSG00000089022.14	ENST00000550735.7:ENST00000553053.5:ENST00000551404.6:ENST00000549875.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	27	2	2.42282	2.610855	2.79889	0.0110274	0.00879576	0.0927187	0.0790073
chr17	20013249	20013349	6571824	0	+	0.37	(0.35,0.378]	chr17	639047	22	INTRON	INTRON	SPECC1	ENSG00000128487.19	ENST00000677148.1:ENST00000679048.1:ENST00000678019.1:ENST00000678315.1:ENST00000678321.1:ENST00000676570.1:ENST00000678651.1:ENST00000679049.1:ENST00000472876.5:ENST00000467722.3:ENST00000583528.6:ENST00000680019.1:ENST00000395527.9:ENST00000681593.1:ENST00000680830.1:ENST00000680124.1:ENST00000583482.7:ENST00000679255.1:ENST00000681202.1:ENST00000677914.1:ENST00000578321.2:ENST00000680374.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	73	2	1.77736	2.610855	3.44435	0.0225073	0.00179102	0.124921	0.0380316
chr7	2215289	2215384	3466759	0	-	0.578947	(0.57,1]	chr7	324082	17	INTRON	INTRON	MAD1L1	ENSG00000002822.16	ENST00000406869.5:ENST00000399654.6:ENST00000402746.5:ENST00000265854.12:ENST00000486340.5:ENST00000469871.1:ENST00000445959.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	27	2	2.42282	2.610855	2.79889	0.0110274	0.00879576	0.0927187	0.0790073
chr17	31124558	31124658	6591429	0	+	0.36	(0.35,0.378]	chr17	641053	288	INTRON	INTRON	NF1	ENSG00000196712.20	ENST00000696138.1:ENST00000356175.7:ENST00000487476.5:ENST00000691014.1:ENST00000358273.9:ENST00000431387.8:ENST00000579081.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	53	2	2.49643	2.6107	2.72497	0.0198266	0.00752974	0.109608	0.0773151
chr7	157175134	157175234	3454306	0	+	0.3	(0.28,0.32]	chr7	322923	1	SS5_PROX	SS5_PROX:INTRON	UBE3C	ENSG00000009335.18	ENST00000611269.4:ENST00000348165.10:ENST00000389103.4	protein_coding	protein_coding	protein_coding	protein_coding	5	87	2	2.25951	2.61069	2.96187	0.0114995	0.00397414	0.0889104	0.0577209
chr5	128040847	128040946	2715877	0	-	0.50505	(0.476,0.515]	chr5	255356	162	INTRON	INTRON	SLC12A2-DT	ENSG00000245937.9	ENST00000499346.7:ENST00000514409.6:ENST00000661296.1:ENST00000657475.2:ENST00000689029.1:ENST00000687795.1:ENST00000661552.2:ENST00000660408.1:ENST00000501652.5:ENST00000501173.6:ENST00000514573.5:ENST00000508353.5:ENST00000660180.1:ENST00000665302.1:ENST00000659990.1:ENST00000665599.1:ENST00000501702.7:ENST00000668567.1:ENST00000657683.1:ENST00000668265.1:ENST00000659415.1:ENST00000508878.5	lncRNA	lncRNA	lncRNA	lncRNA	4	66	2	2.48551	2.610575	2.73564	0.00756632	0.00333144	0.0773151	0.0512081
chr2	107731346	107731446	1205863	0	-	0.29	(0.28,0.32]	chr2	128532	137	INTRON	INTRON	LINC01885:ENSG00000286769	ENSG00000237880.2:ENSG00000286769.1	ENST00000654481.1:ENST00000669817.1	lncRNA	lncRNA	lncRNA	lncRNA	3	62	2	2.13651	2.6105650000000002	3.08462	0.0265696	0.0078976	0.134088	0.076155
chr7	74194254	74194351	3332431	0	+	0.28866000000000003	(0.28,0.32]	chr7	310058	17	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	EIF4H	ENSG00000106682.16	ENST00000678438.1:ENST00000677998.1:ENST00000495187.2:ENST00000265753.13:ENST00000353999.6:ENST00000677570.1:ENST00000677681.1:ENST00000678815.1:ENST00000679266.1:ENST00000679287.1:ENST00000678341.1:ENST00000679161.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	62	2	2.13651	2.6105650000000002	3.08462	0.0265696	0.0078976	0.134088	0.076155
chr21	33907953	33908042	7444969	0	-	0.426966	(0.408,0.44]	chr21	759726	1	INTRON	INTRON	ENSG00000249209:ATP5PO	ENSG00000249209.2:ENSG00000241837.7	ENST00000429238.2:ENST00000290299.7:ENST00000491703.5:ENST00000431254.5:ENST00000652380.1:ENST00000418933.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	110	2	2.35743	2.6105	2.86357	0.00206746	5.90913e-4	0.0421756	0.0225024
chr16	89451894	89451994	6543215	0	-	0.37	(0.35,0.378]	chr16	634281	202	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	53	2	2.23043	2.610435	2.99044	0.0187487	0.00894806	0.117523	0.0799922
chr9	137668684	137668782	4223977	0	+	0.357143	(0.35,0.378]	chr9	388187	8	INTRON	INTRON	EHMT1	ENSG00000181090.21	ENST00000462484.5:ENST00000371394.6:ENST00000630754.2:ENST00000460843.6:ENST00000626216.2:ENST00000629335.2:ENST00000637335.1:ENST00000636376.1:ENST00000637655.1:ENST00000636027.1:ENST00000492232.5:ENST00000460486.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	53	2	2.23043	2.610435	2.99044	0.0187487	0.00894806	0.117523	0.0799922
chr3	177139335	177139435	1871864	0	-	0.49	(0.476,0.515]	chr3	187422	32	INTRON	INTRON	TBL1XR1	ENSG00000177565.18	ENST00000457928.7:ENST00000430069.5:ENST00000673974.1:ENST00000352800.10:ENST00000422442.6:ENST00000428970.5:ENST00000424913.5:ENST00000437738.5:ENST00000431421.5:ENST00000635794.1:ENST00000630796.2:ENST00000450267.5:ENST00000630833.2:ENST00000431674.5:ENST00000422066.5:ENST00000443315.5:ENST00000627825.2:ENST00000427349.5:ENST00000413084.5:ENST00000637137.1:ENST00000491623.2:ENST00000637544.1:ENST00000636187.1:ENST00000636912.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	59	2	1.63838	2.610405	3.58243	0.0555021	6.18479e-4	0.165463	0.0223951
chr17	75153286	75153382	6836079	0	-	0.46875	(0.44,0.476]	chr17	675492	5	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	JPT1	ENSG00000189159.16	ENST00000409753.8:ENST00000476258.5:ENST00000482348.5:ENST00000304834.11:ENST00000356033.8:ENST00000470924.5:ENST00000481647.5:ENST00000580380.1:ENST00000581874.1:ENST00000584079.5:ENST00000465454.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	10	126	2	1.63866	2.61031	3.58196	0.011148	6.33388e-5	0.0936137	0.00708877
chr15	63821228	63821328	6200778	0	-	0.55	(0.515,0.57]	chr15	591445	403	INTRON	INTRON	HERC1	ENSG00000103657.14	ENST00000443617.7:ENST00000561400.1:ENST00000559886.1:ENST00000558532.1:ENST00000560462.1:ENST00000560316.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	93	2	2.09379	2.61028	3.12677	0.00680216	7.69212e-5	0.071184	0.00735438
chr4	1887890	1887990	1910735	0	+	0.43	(0.408,0.44]	chr4	191710	2	SS5_PROX	SS5_PROX:INTRON	NSD2	ENSG00000109685.19	ENST00000508803.6:ENST00000507820.5:ENST00000508355.5:ENST00000514045.5:ENST00000515806.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	95	2	2.48326	2.6101799999999997	2.7371	0.00324772	7.83328e-4	0.0508595	0.0257505
chr8	94430265	94430364	3993002	0	-	0.343434	(0.32,0.35]	chr8	365519	27	UTR3	UTR3:EXON_MRNA:INTRON	RAD54B:FSBP	ENSG00000197275.14:ENSG00000265817.4	ENST00000336148.10:ENST00000517506.2:ENST00000463267.5:ENST00000518998.5:ENST00000523839.5:ENST00000481490.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	88	2	1.30365	2.610155	3.91666	0.0773448	1.54585e-4	0.196285	0.0106835
chr15	27131286	27131386	5983756	0	+	0.29	(0.28,0.32]	chr15	569164	1041	INTRON	INTRON	GABRG3	ENSG00000182256.13	ENST00000615808.5:ENST00000555083.5	protein_coding	protein_coding	protein_coding	protein_coding	5	100	2	2.56291	2.61012	2.65733	0.0061571	0.00227849	0.0676501	0.0437013
chr2	151456820	151456920	893696	0	+	0.49	(0.476,0.515]	chr2	98993	2	SS5_PROX	SS5_PROX:INTRON	RIF1	ENSG00000080345.18	ENST00000453091.6:ENST00000428287.6:ENST00000444746.7:ENST00000243326.9:ENST00000430328.6	protein_coding	protein_coding	protein_coding	protein_coding	4	59	2	1.80284	2.61006	3.41728	0.033161	0.00165726	0.145899	0.0369207
chr6	13638628	13638715	3058485	0	-	0.367816	(0.35,0.378]	chr6	284500	3	INTRON	INTRON	RANBP9	ENSG00000010017.13	ENST00000011619.6	protein_coding	protein_coding	protein_coding	protein_coding	6	101	2	2.52395	2.6099750000000004	2.696	0.00824736	4.12892e-4	0.0773378	0.0181365
chr9	131142092	131142191	4215793	0	+	0.393939	(0.378,0.408]	chr9	386554	15	EXON_MRNA	EXON_MRNA:INTRON	NUP214	ENSG00000126883.19	ENST00000695497.1:ENST00000695498.1:ENST00000695496.1:ENST00000695495.1:ENST00000695494.1:ENST00000695493.1:ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000525561.2:ENST00000651022.1:ENST00000695499.1:ENST00000530863.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	46	661	2	2.2401	2.609915	2.97973	3.26801e-5	2.65489e-6	0.00457076	0.00115411
chr12	123386765	123386863	5242597	0	+	0.469388	(0.44,0.476]	chr12	498168	22	INTRON	INTRON	KMT5A	ENSG00000183955.14	ENST00000402868.8:ENST00000437519.5:ENST00000537270.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	68	2	2.1923	2.609905	3.02751	0.00715968	0.0043698	0.0723634	0.0604104
chr16	85557762	85557861	6415409	0	+	0.383838	(0.378,0.408]	chr16	615470	10	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	10	161	2	2.55439	2.609895	2.6654	4.01276e-4	3.5967e-4	0.0179994	0.0175552
chr17	16441646	16441739	6562675	0	+	0.473118	(0.44,0.476]	chr17	637923	4	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:INTRON	SNHG29	ENSG00000175061.19	ENST00000475947.7:ENST00000584177.5:ENST00000487066.6:ENST00000580180.6:ENST00000660020.1:ENST00000665646.1:ENST00000481898.6:ENST00000660419.1:ENST00000668333.1:ENST00000667979.2:ENST00000663781.1:ENST00000664939.1:ENST00000491009.6:ENST00000583400.7:ENST00000654778.1:ENST00000497774.6:ENST00000669136.1:ENST00000659884.1:ENST00000582911.6:ENST00000666215.2:ENST00000580770.5:ENST00000581718.6:ENST00000579473.6:ENST00000581361.5:ENST00000692724.1:ENST00000689691.1:ENST00000686699.1:ENST00000483140.7:ENST00000477249.7:ENST00000484836.2:ENST00000655540.1:ENST00000475953.6:ENST00000470491.7:ENST00000480811.6:ENST00000662869.1:ENST00000671170.1:ENST00000658116.2:ENST00000685971.1:ENST00000689483.1:ENST00000688805.1:ENST00000692720.1:ENST00000653954.1:ENST00000581913.5:ENST00000481027.5:ENST00000472367.5:ENST00000483588.2:ENST00000478103.6:ENST00000658943.1:ENST00000690854.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	200	2992	2	2.35202	2.609895	2.86777	3.35307e-6	3.04653e-7	0.00119316	3.01104e-4
chr20	32784159	32784257	7256874	0	+	0.520408	(0.515,0.57]	chr20	737132	24	INTRON	INTRON	DNMT3B	ENSG00000088305.19	ENST00000696232.1:ENST00000328111.6:ENST00000696231.1:ENST00000348286.6:ENST00000353855.6:ENST00000696233.1:ENST00000443239.7:ENST00000696234.1:ENST00000696235.1:ENST00000456297.6:ENST00000696236.1:ENST00000696237.1:ENST00000201963.3:ENST00000696238.1:ENST00000696239.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	56	2	2.53845	2.6098850000000002	2.68132	0.00632226	0.00324198	0.0687526	0.0524329
chr21	21147370	21147470	7380483	0	+	0.42	(0.408,0.44]	chr21	752602	1484	INTRON	INTRON	NCAM2	ENSG00000154654.15	ENST00000400546.6	protein_coding	protein_coding	protein_coding	protein_coding	9	138	2	2.59309	2.6098600000000003	2.62663	7.7144e-4	3.10676e-4	0.0255407	0.0158045
chr5	43128723	43128823	2349105	0	+	0.48	(0.476,0.515]	chr5	226661	38	INTRON	INTRON	ZNF131	ENSG00000172262.12	ENST00000515326.5:ENST00000682664.1:ENST00000510026.5:ENST00000504359.1:ENST00000509156.5:ENST00000508259.5:ENST00000507218.5:ENST00000306938.8:ENST00000505606.6:ENST00000509634.5:ENST00000509341.5:ENST00000511736.5:ENST00000509931.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	58	2	2.01953	2.6096399999999997	3.19975	0.0163662	0.00383299	0.109586	0.0542786
chr6	17674604	17674704	3065885	0	-	0.5	(0.476,0.515]	chr6	284853	3	SS5_PROX	SS5_PROX:INTRON	NUP153	ENSG00000124789.12	ENST00000613258.4:ENST00000537253.5:ENST00000262077.3	protein_coding	protein_coding	protein_coding	protein_coding	4	58	2	2.01953	2.6096399999999997	3.19975	0.0163662	0.00383299	0.109586	0.0542786
chr11	58618494	58618593	4794148	0	+	0.323232	(0.32,0.35]	chr11	443881	9	UTR3	UTR3:EXON_MRNA	ZFP91	ENSG00000186660.15	ENST00000316059.7	protein_coding	protein_coding	protein_coding	protein_coding	4	69	2	1.83315	2.609635	3.38612	0.0313348	0.00249604	0.144381	0.0446195
chr4	32058483	32058583	1942033	0	+	0.35	(0.32,0.35]	chr4	194727	603	INTRON	INTRON	LINC02506	ENSG00000251129.3	ENST00000662669.1:ENST00000665582.2:ENST00000667252.2:ENST00000660373.2:ENST00000684849.1:ENST00000513211.2:ENST00000659613.1:ENST00000657576.1:ENST00000686730.1:ENST00000685407.1:ENST00000685455.1:ENST00000655951.1	lncRNA	lncRNA	lncRNA	lncRNA	6	105	2	2.27097	2.6095550000000003	2.94814	0.00347642	0.00182605	0.0540643	0.0386492
chr2	176314824	176314923	925672	0	+	0.333333	(0.32,0.35]	chr2	101688	101	INTRON	INTRON	MTX2	ENSG00000128654.14	ENST00000420864.5:ENST00000249442.11:ENST00000423461.6:ENST00000443241.5:ENST00000452865.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	92	2	2.5652	2.609535	2.65387	0.00765724	0.00137401	0.075364	0.0340409
chr3	49030171	49030264	1691588	0	-	0.537634	(0.515,0.57]	chr3	173116	6	UTR3	UTR3:EXON_MRNA	QRICH1	ENSG00000198218.11	ENST00000395443.7:ENST00000498392.1:ENST00000357496.6:ENST00000424300.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	42	2	2.1885	2.609435	3.03037	0.0202537	0.00608732	0.121364	0.0676501
chr1	28742002	28742102	58397	0	+	0.41	(0.408,0.44]	chr1	7598	2	SS3_PROX	SS3_PROX:INTRON	YTHDF2	ENSG00000198492.16	ENST00000542507.5:ENST00000474884.5:ENST00000373812.8:ENST00000541996.5:ENST00000478283.5:ENST00000496288.5:ENST00000476976.1:ENST00000475796.5:ENST00000468863.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	16	234	2	2.50721	2.60942	2.71163	1.48502e-4	5.93113e-5	0.0111404	0.00632063
chr17	32357802	32357902	6598057	0	+	0.48	(0.476,0.515]	chr17	641893	55	INTRON	INTRON	ZNF207	ENSG00000010244.19	ENST00000321233.10:ENST00000394673.6:ENST00000394670.9:ENST00000579634.5:ENST00000580759.5:ENST00000342555.10:ENST00000577908.5:ENST00000394679.9:ENST00000582165.1:ENST00000577324.1:ENST00000578918.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	14	204	2	2.60326	2.6094049999999998	2.61555	3.96108e-4	4.44661e-5	0.0185763	0.00540751
chr15	63830022	63830122	6200866	0	-	0.35	(0.32,0.35]	chr15	591445	491	INTRON	INTRON	HERC1	ENSG00000103657.14	ENST00000443617.7:ENST00000561400.1:ENST00000559886.1:ENST00000558532.1:ENST00000560462.1:ENST00000560316.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	57	2	2.13945	2.6094	3.07935	0.0254517	0.00724137	0.133676	0.0729826
chr1	65272417	65272517	135717	0	+	0.37	(0.35,0.378]	chr1	15346	71	INTRON	INTRON	DNAJC6	ENSG00000116675.16	ENST00000463018.5:ENST00000494710.6:ENST00000263441.11:ENST00000395325.7:ENST00000483402.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	95	2	1.54566	2.60936	3.67306	0.0207593	7.05001e-4	0.122348	0.024224
chr19	18307085	18307179	7151982	0	-	0.478723	(0.476,0.515]	chr19	722755	10	UTR3	UTR3:EXON_MRNA	LSM4	ENSG00000130520.11	ENST00000593829.6:ENST00000252816.10:ENST00000600289.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	34	490	2	2.18561	2.60931	3.03301	8.82066e-5	1.70117e-6	0.0079097	8.74504e-4
chr6	17962306	17962406	3068300	0	-	0.34	(0.32,0.35]	chr6	285105	105	INTRON	INTRON	KIF13A	ENSG00000137177.20	ENST00000378814.9:ENST00000259711.11:ENST00000378826.6:ENST00000378843.6:ENST00000636847.1:ENST00000507576.1:ENST00000505588.1:ENST00000502704.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	87	2	1.93994	2.60926	3.27858	0.0084207	0.00368368	0.0825628	0.0535094
chr2	101003208	101003308	835647	0	+	0.38	(0.378,0.408]	chr2	93822	4	SS5_PROX	SS5_PROX:INTRON	RPL31	ENSG00000071082.11	ENST00000409000.5:ENST00000409028.8:ENST00000264258.8:ENST00000409038.5:ENST00000409650.5:ENST00000409733.5:ENST00000409320.7:ENST00000419276.1:ENST00000409711.1:ENST00000456292.5:ENST00000441435.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	155	2	2.31749	2.609255	2.90102	8.75062e-4	3.47934e-4	0.0270926	0.0166215
chr17	77496013	77496113	6681627	0	+	0.42	(0.408,0.44]	chr17	652614	4	SS3_PROX	SS3_PROX:INTRON	SEPTIN9	ENSG00000184640.20	ENST00000591198.5:ENST00000427177.6:ENST00000431235.6:ENST00000449803.6:ENST00000329047.13:ENST00000588690.6:ENST00000423034.6:ENST00000427674.6:ENST00000585930.5:ENST00000541152.6:ENST00000591088.5:ENST00000592481.6:ENST00000592951.5:ENST00000427180.5:ENST00000586456.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	49	2	2.21238	2.609165	3.00595	0.0193525	0.00781452	0.119831	0.0759016
chr5	39026833	39026933	2605172	0	-	0.53	(0.515,0.57]	chr5	247896	53	INTRON	INTRON	RICTOR	ENSG00000164327.13	ENST00000357387.8:ENST00000511516.5:ENST00000296782.9:ENST00000510711.5:ENST00000513566.1:ENST00000514735.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	64	2	1.86218	2.609135	3.35609	0.0100169	0.00174131	0.0880217	0.0375363
chr2	61491634	61491734	1130731	0	-	0.49	(0.476,0.515]	chr2	121550	2	SS5_PROX	SS5_PROX:INTRON	XPO1	ENSG00000082898.19	ENST00000677110.1:ENST00000678113.1:ENST00000676553.1:ENST00000677556.1:ENST00000677814.1:ENST00000676771.1:ENST00000677803.1:ENST00000677239.1:ENST00000678790.1:ENST00000677928.1:ENST00000678182.1:ENST00000677150.1:ENST00000678172.1:ENST00000678360.1:ENST00000678081.1:ENST00000676889.1:ENST00000676783.1:ENST00000679035.1:ENST00000677422.1:ENST00000677417.1:ENST00000677813.1:ENST00000676999.1:ENST00000676667.1:ENST00000678263.1:ENST00000678877.1:ENST00000677933.1:ENST00000680228.1:ENST00000677289.1:ENST00000677190.1:ENST00000481073.6:ENST00000677476.1:ENST00000469337.2:ENST00000401558.7:ENST00000428210.5:ENST00000677290.1:ENST00000677850.1:ENST00000676778.1:ENST00000451765.6:ENST00000676789.1:ENST00000678741.1:ENST00000404992.6:ENST00000406957.5:ENST00000677157.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	125	2	2.17861	2.6090400000000002	3.03947	0.00544196	5.10485e-5	0.0646078	0.00585477
chr12	132769565	132769660	5449589	0	-	0.378947	(0.378,0.408]	chr12	521960	8	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	GOLGA3	ENSG00000090615.16	ENST00000204726.9:ENST00000450791.8:ENST00000693666.1:ENST00000690057.1:ENST00000688114.1:ENST00000687190.1:ENST00000690511.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	54	2	2.30961	2.60898	2.90835	0.055088	0.00133715	0.165463	0.0335955
chr7	105034326	105034426	3374819	0	+	0.46	(0.44,0.476]	chr7	315854	194	INTRON	INTRON	KMT2E	ENSG00000005483.22	ENST00000622386.2:ENST00000257745.9:ENST00000334884.9:ENST00000311117.8:ENST00000478990.5:ENST00000480368.5:ENST00000495267.5:ENST00000476671.5:ENST00000667857.1:ENST00000474203.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	75	2	2.60774	2.60893	2.61012	0.0255874	5.86746e-4	0.120269	0.0220073
chr10	125091810	125091910	4713648	0	-	0.41	(0.408,0.44]	chr10	434903	31	INTRON	INTRON	CTBP2	ENSG00000175029.17	ENST00000337195.9:ENST00000411419.6:ENST00000494626.6:ENST00000531469.5:ENST00000460976.5:ENST00000476817.1:ENST00000530884.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	123	2	2.14702	2.60892	3.07082	0.0030836	2.09358e-4	0.0510391	0.0131276
chr1	21771667	21771767	396755	0	-	0.52	(0.515,0.57]	chr1	47345	135	INTRON	INTRON	USP48	ENSG00000090686.16	ENST00000400301.5:ENST00000308271.14:ENST00000529637.5:ENST00000421625.6:ENST00000527823.5:ENST00000532737.1:ENST00000489108.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	105	2	2.4745	2.608815	2.74313	0.00279583	1.0436e-4	0.0469265	0.00863456
chr12	100272477	100272576	5200566	0	+	0.383838	(0.378,0.408]	chr12	492117	43	INTRON	INTRON	SCYL2	ENSG00000136021.19	ENST00000549687.5:ENST00000360820.7:ENST00000548392.5:ENST00000635101.1:ENST00000550067.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	38	2	2.2259	2.6088	2.9917	0.0662381	0.0068789	0.181924	0.0749442
chr5	176180448	176180537	2774940	0	-	0.393258	(0.378,0.408]	chr5	261258	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ENSG00000248596:ENSG00000283235	ENSG00000248596.8:ENSG00000283235.2	ENST00000515403.5:ENST00000508056.5:ENST00000658968.1:ENST00000512260.5:ENST00000510850.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	2	38	2	2.2259	2.6088	2.9917	0.0662381	0.0068789	0.181924	0.0749442
chr5	138349234	138349333	2494845	0	+	0.393939	(0.378,0.408]	chr5	238465	24	UTR3	UTR3:EXON_MRNA	FAM53C	ENSG00000120709.11	ENST00000239906.10	protein_coding	protein_coding	protein_coding	protein_coding	3	51	2	1.88729	2.608775	3.33026	0.0532327	0.00189824	0.162538	0.0402736
chrX	130409056	130409156	7722671	0	+	0.39	(0.378,0.408]	chrX	789988	4	SS3_PROX	SS3_PROX:INTRON	RBMX2	ENSG00000134597.17	ENST00000305536.11:ENST00000469953.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	51	2	1.88729	2.608775	3.33026	0.0532327	0.00189824	0.162538	0.0402736
chr7	73004793	73004887	3554171	0	-	0.457447	(0.44,0.476]	chr7	330671	7	INTRON	INTRON	STAG3L3	ENSG00000174353.17	ENST00000436857.5:ENST00000428423.5:ENST00000448173.5:ENST00000423834.6:ENST00000569650.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	6	92	2	2.55649	2.60876	2.66103	0.00670547	4.47456e-4	0.0707084	0.0191768
chr6	52265385	52265485	3105705	0	-	0.3	(0.28,0.32]	chr6	290749	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	MCM3	ENSG00000112118.20	ENST00000616552.4:ENST00000229854.12:ENST00000596288.7:ENST00000419835.8:ENST00000421471.1	protein_coding	protein_coding	protein_coding	protein_coding	3	62	2	2.14002	2.60873	3.07744	0.0304107	0.00604536	0.130461	0.0700813
chr3	23862672	23862772	1388297	0	+	0.35	(0.32,0.35]	chr3	145385	508	INTRON	INTRON	UBE2E1	ENSG00000170142.12	ENST00000306627.8:ENST00000346855.7:ENST00000495141.5:ENST00000442670.5:ENST00000424381.5:ENST00000467766.5:ENST00000475680.5:ENST00000452012.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	68	2	1.97654	2.608705	3.24087	0.0199113	0.00420518	0.120668	0.0572185
chr6	159788340	159788439	3254693	0	-	0.474747	(0.44,0.476]	chr6	302550	3	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TCP1	ENSG00000120438.12	ENST00000321394.12:ENST00000544255.5:ENST00000420894.6:ENST00000392168.6:ENST00000539756.1:ENST00000543532.5:ENST00000538530.5:ENST00000538128.5:ENST00000543517.5:ENST00000539948.5:ENST00000537390.5:ENST00000536394.1:ENST00000536607.1:ENST00000546023.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	24	344	2	2.38325	2.608685	2.83412	4.60695e-5	2.0243e-5	0.00552588	0.00365384
chr1	39567056	39567156	427686	0	-	0.5	(0.476,0.515]	chr1	51910	3	SS5_PROX	SS5_PROX:INTRON	PABPC4	ENSG00000090621.15	ENST00000677006.1:ENST00000527718.2:ENST00000676859.1:ENST00000372858.8:ENST00000372856.7:ENST00000372857.7:ENST00000372862.7:ENST00000676523.1:ENST00000677548.1:ENST00000678980.1:ENST00000677244.1:ENST00000677609.1:ENST00000679246.1:ENST00000678287.1:ENST00000678625.1:ENST00000470443.6:ENST00000677860.1:ENST00000676863.1:ENST00000678894.1:ENST00000421687.6:ENST00000525669.5:ENST00000513632.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	36	2	2.48527	2.60866	2.73205	0.03496	0.0159328	0.13747500000000001	0.109464
chr12	116047190	116047290	5423238	0	-	0.48	(0.476,0.515]	chr12	518245	242	INTRON	INTRON	MED13L	ENSG00000123066.9	ENST00000281928.9:ENST00000650226.1:ENST00000648737.1:ENST00000548743.2:ENST00000647567.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	36	2	2.48527	2.60866	2.73205	0.03496	0.0159328	0.13747500000000001	0.109464
chr12	123363701	123363801	5445197	0	-	0.49	(0.476,0.515]	chr12	521118	129	INTRON	INTRON	SBNO1	ENSG00000139697.14	ENST00000602398.3:ENST00000267176.8	protein_coding	protein_coding	protein_coding	protein_coding	2	36	2	2.48527	2.60866	2.73205	0.03496	0.0159328	0.13747500000000001	0.109464
chr2	99475655	99475755	1189738	0	-	0.51	(0.476,0.515]	chr2	127721	103	INTRON	INTRON	REV1	ENSG00000135945.10	ENST00000393445.7:ENST00000258428.8:ENST00000413697.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	36	2	2.48527	2.60866	2.73205	0.03496	0.0159328	0.13747500000000001	0.109464
chr21	46345128	46345228	7421427	0	+	0.48	(0.476,0.515]	chr21	756713	100	INTRON	INTRON	PCNT	ENSG00000160299.18	ENST00000466474.6:ENST00000490468.5:ENST00000695525.1:ENST00000695558.1:ENST00000359568.10:ENST00000695526.1:ENST00000480896.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	36	2	2.48527	2.60866	2.73205	0.03496	0.0159328	0.13747500000000001	0.109464
chr22	21605756	21605856	7482085	0	+	0.51	(0.476,0.515]	chr22	763238	124	INTRON	INTRON	UBE2L3	ENSG00000185651.16	ENST00000458578.6:ENST00000545681.2:ENST00000696046.1:ENST00000342192.9:ENST00000496722.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	36	2	2.48527	2.60866	2.73205	0.03496	0.0159328	0.13747500000000001	0.109464
chr7	132974524	132974596	3644809	0	-	0.430556	(0.408,0.44]	chr7	338853	1	INTRON	INTRON	CHCHD3	ENSG00000106554.13	ENST00000262570.10:ENST00000448878.6:ENST00000496427.5:ENST00000423635.5:ENST00000481152.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	101	2	1.93275	2.60858	3.28441	0.00938746	2.01433e-4	0.0817766	0.0124157
chr4	82898562	82898654	2180188	0	-	0.369565	(0.35,0.378]	chr4	214424	1	INTRON	INTRON	SEC31A:THAP9-AS1	ENSG00000138674.17:ENSG00000251022.6	ENST00000355196.6:ENST00000503210.5:ENST00000507676.5:ENST00000506495.5:ENST00000507051.1:ENST00000504520.6:ENST00000504792.6:ENST00000512932.5:ENST00000511271.5:ENST00000508772.5:ENST00000513581.5:ENST00000504718.5:ENST00000505028.5:ENST00000507660.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	6	101	2	2.30195	2.608555	2.91516	0.00377584	0.0013628	0.0540736	0.0339121
chr7	143901760	143901860	3665486	0	-	0.53	(0.515,0.57]	chr7	340345	4	SS5_PROX	SS5_PROX:INTRON	TCAF1	ENSG00000198420.10	ENST00000479870.6:ENST00000355951.2:ENST00000478172.1	protein_coding	protein_coding	protein_coding	protein_coding	4	52	2	2.15866	2.608525	3.05839	0.0100547	0.00485936	0.0848452	0.0640618
chr18	9203584	9203682	6869604	0	+	0.377551	(0.35,0.378]	chr18	680581	26	INTRON	INTRON	ANKRD12	ENSG00000101745.17	ENST00000262126.9:ENST00000540578.6:ENST00000581635.5:ENST00000400020.7:ENST00000581758.1:ENST00000546007.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	98	2	2.24809	2.60851	2.96893	0.00361961	0.00149997	0.0554656	0.0351802
chr19	40721467	40721566	7069876	0	+	0.515152	(0.476,0.515]	chr19	706439	28	INTRON	INTRON	ITPKC	ENSG00000086544.3	ENST00000263370.3	protein_coding	protein_coding	protein_coding	protein_coding	3	49	2	2.06491	2.608465	3.15202	0.0304733	0.00455841	0.143385	0.0595107
chr16	22528473	22528571	6322908	0	+	0.438776	(0.408,0.44]	chr16	605497	1	INTRON	INTRON	NPIPB5	ENSG00000243716.11	ENST00000415654.5:ENST00000415833.6:ENST00000424340.6:ENST00000521555.6:ENST00000517539.5:ENST00000541664.5:ENST00000528249.5:ENST00000543997.1:ENST00000539604.5:ENST00000621622.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	12	180	2	2.55487	2.608425	2.66198	3.34659e-4	1.30839e-4	0.0169733	0.00985124
chr6	37828611	37828711	2857121	0	+	0.49	(0.476,0.515]	chr6	270225	82	INTRON	INTRON	ZFAND3	ENSG00000156639.12	ENST00000287218.9:ENST00000373391.6:ENST00000474522.5	protein_coding	protein_coding	protein_coding	protein_coding	3	51	2	2.40608	2.60842	2.81076	0.0425709	0.00203568	0.148082	0.0417667
chr7	43651801	43651899	3525596	0	-	0.479592	(0.476,0.515]	chr7	328755	7	INTRON	INTRON	COA1	ENSG00000106603.20	ENST00000415076.6:ENST00000446330.6:ENST00000446564.5:ENST00000438444.5:ENST00000223336.11:ENST00000310564.10:ENST00000415798.5:ENST00000431651.5:ENST00000451651.5:ENST00000418140.5:ENST00000448704.5:ENST00000470156.1:ENST00000457939.1:ENST00000420441.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	65	2	2.365	2.608385	2.85177	0.0128901	0.00169916	0.0926667	0.0381936
chr16	29607918	29608018	6471680	0	-	0.55	(0.515,0.57]	chr16	625301	131	INTRON	INTRON	ENSG00000288632	ENSG00000288632.1	ENST00000675579.1	lncRNA	lncRNA	lncRNA	lncRNA	4	60	2	2.1885	2.608345	3.02819	0.0202537	7.81057e-4	0.121364	0.0257168
chr18	80118648	80118748	6938184	0	+	0.39	(0.378,0.408]	chr18	686196	6	INTRON	INTRON	ADNP2	ENSG00000101544.9	ENST00000262198.9:ENST00000560752.5:ENST00000559951.5:ENST00000560561.1:ENST00000561195.1	protein_coding	protein_coding	protein_coding	protein_coding	4	62	2	1.78011	2.6082799999999997	3.43645	0.0356367	0.00171162	0.151629	0.037419
chr12	79927699	79927799	5376461	0	-	0.33	(0.32,0.35]	chr12	512797	139	INTRON	INTRON	PPP1R12A	ENSG00000058272.19	ENST00000261207.9:ENST00000450142.7:ENST00000437004.6:ENST00000550107.5:ENST00000547330.5:ENST00000550510.5	protein_coding	protein_coding	protein_coding	protein_coding	3	57	2	1.88909	2.6081950000000003	3.3273	0.0553737	0.00218894	0.165463	0.0435144
chr11	66064931	66065028	4807818	0	+	0.381443	(0.378,0.408]	chr11	447316	4	EXON_MRNA	EXON_MRNA:INTRON	SF3B2	ENSG00000087365.16	ENST00000528302.5:ENST00000322535.11:ENST00000530981.1:ENST00000534765.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	38	2	2.54849	2.6081700000000003	2.66785	0.0273196	0.0224639	0.136494	0.11692
chr1	185305738	185305833	603590	0	-	0.347368	(0.32,0.35]	chr1	71892	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	IVNS1ABP	ENSG00000116679.16	ENST00000367498.8:ENST00000480769.5:ENST00000459929.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	21	365	2	2.49525	2.608145	2.72104	8.05562e-5	5.95739e-5	0.00804467	0.00634724
chr16	30581416	30581511	6473879	0	-	0.421053	(0.408,0.44]	chr16	625854	9	UTR3	UTR3:EXON_MRNA:INTRON	ZNF785	ENSG00000197162.10	ENST00000562128.1:ENST00000470110.2:ENST00000395216.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	68	2	2.39162	2.6081149999999997	2.82461	0.0105837	0.00241819	0.0911864	0.0442901
chr10	21877491	21877591	4577413	0	-	0.31	(0.28,0.32]	chr10	421906	117	INTRON	INTRON	DNAJC1	ENSG00000136770.11	ENST00000376980.8	protein_coding	protein_coding	protein_coding	protein_coding	2	46	2	2.18975	2.608035	3.02632	0.0776042	0.0071944	0.196285	0.0756118
chr19	10316879	10316975	7135332	0	-	0.583333	(0.57,1]	chr19	719323	8	UTR3	UTR3:EXON_MRNA	RAVER1	ENSG00000161847.14	ENST00000617231.5:ENST00000592208.5:ENST00000611074.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	80	2	2.01786	2.6080300000000003	3.1982	0.00313784	8.18683e-6	0.0514466	0.00217224
chrX	2500010	2500110	7745609	0	-	0.32	(0.28,0.32]	chrX	792975	3	SS5_PROX	SS5_PROX:INTRON	DHRSX:ZBED1	ENSG00000169084.15:ENSG00000214717.12	ENST00000334651.11:ENST00000412516.7:ENST00000444280.6:ENST00000441131.7:ENST00000478825.7:ENST00000430536.7:ENST00000381222.8:ENST00000381223.9:ENST00000652001.1:ENST00000381218.8:ENST00000461691.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	48	2	2.29724	2.607875	2.91851	0.0554156	0.0130672	0.18407	0.093385
chr6	36972063	36972161	3089661	0	-	0.530612	(0.515,0.57]	chr6	289031	15	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	MTCH1	ENSG00000137409.21	ENST00000695055.1:ENST00000695048.1:ENST00000695049.1:ENST00000695050.1:ENST00000695051.1:ENST00000695052.1:ENST00000695053.1:ENST00000695054.1:ENST00000695046.1:ENST00000695047.1:ENST00000695045.1:ENST00000695044.1:ENST00000695043.1:ENST00000373616.9:ENST00000373627.10:ENST00000695056.1:ENST00000695059.1:ENST00000695060.1:ENST00000695058.1:ENST00000695057.1:ENST00000695066.1:ENST00000695067.1:ENST00000695068.1:ENST00000695069.1:ENST00000695063.1:ENST00000695064.1:ENST00000695065.1:ENST00000695062.1:ENST00000695061.1:ENST00000695072.1:ENST00000695070.1:ENST00000695071.1:ENST00000695073.1:ENST00000695074.1:ENST00000695075.1:ENST00000695076.1:ENST00000418541.6:ENST00000460219.3:ENST00000492754.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	70	2	1.811	2.60786	3.40472	0.0325989	8.47527e-5	0.133687	0.0077763
chr10	73716853	73716940	4651927	0	-	0.275862	[0,0.28]	chr10	428193	3	INTRON	INTRON	BMS1P4	ENSG00000271816.1:ENSG00000242338.6	ENST00000580790.1:ENST00000584747.5	lncRNA	lncRNA	lncRNA:transcribed_unprocessed_pseudogene	lncRNA:processed_transcript	4	84	2	2.06426	2.60764	3.15102	0.0168952	0.00767596	0.110899	0.0753665
chr19	1591484	1591584	7112512	0	-	0.7	(0.57,1]	chr19	714542	1	SS5_PROX	SS5_PROX:INTRON	MBD3:ENSG00000267059	ENSG00000071655.18:ENSG00000267059.2	ENST00000434436.8:ENST00000156825.5:ENST00000585937.1:ENST00000585967.5:ENST00000592965.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	78	2	2.50856	2.607615	2.70667	7.21202e-4	9.75169e-5	0.0245208	0.0088963
chr17	81919254	81919352	6850461	0	-	0.663265	(0.57,1]	chr17	678519	11	UTR3	UTR3:EXON_MRNA:INTRON	SIRT7:MAFG	ENSG00000187531.14:ENSG00000197063.11	ENST00000572902.5:ENST00000357736.9	protein_coding	protein_coding	protein_coding	protein_coding	6	47	2	2.22366	2.607565	2.99147	0.00344378	6.75142e-4	0.0539802	0.0237705
chr12	76822531	76822631	5174449	0	+	0.4	(0.378,0.408]	chr12	490129	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ZDHHC17	ENSG00000186908.15	ENST00000546778.5:ENST00000426126.7:ENST00000552453.5:ENST00000550876.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	51	2	2.60296	2.6074200000000003	2.61188	0.0267851	0.0047055	0.123349	0.0631419
chr1	246897115	246897213	681603	0	-	0.5	(0.476,0.515]	chr1	79981	8	INTRON	INTRON	AHCTF1	ENSG00000153207.16	ENST00000648844.2:ENST00000326225.3:ENST00000366508.5:ENST00000470300.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	49	2	2.26789	2.607405	2.94692	0.0176567	0.00794331	0.105233	0.0797304
chr1	203805114	203805214	296775	0	+	0.43	(0.408,0.44]	chr1	34134	17	INTRON	INTRON	ZC3H11A:ZBED6	ENSG00000058673.17:ENSG00000257315.3	ENST00000367210.3:ENST00000453771.5:ENST00000432282.5:ENST00000638800.1:ENST00000367214.5:ENST00000639812.1:ENST00000367212.7:ENST00000332127.8:ENST00000550078.2:ENST00000495527.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	122	2	1.87904	2.60733	3.33562	0.011526	2.6898e-5	0.0889104	0.00408175
chr21	38107925	38108024	7463965	0	-	0.424242	(0.408,0.44]	chr21	760303	82	INTRON	INTRON	DSCR4	ENSG00000184029.9	ENST00000398948.5:ENST00000328264.7:ENST00000482032.1	lncRNA	lncRNA	lncRNA	lncRNA	5	79	2	2.19524	2.60733	3.01942	0.00990486	7.74413e-4	0.0838372	0.0256083
chr15	84715066	84715166	6252018	0	-	0.4	(0.378,0.408]	chr15	596688	2	SS3_PROX	SS3_PROX:INTRON	SEC11A	ENSG00000140612.14	ENST00000559729.5:ENST00000268220.12:ENST00000560266.5:ENST00000558134.5:ENST00000558217.5:ENST00000455959.7:ENST00000560409.5:ENST00000558196.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	68	2	2.30628	2.607315	2.90835	0.0163339	0.00133715	0.101571	0.0335955
chr17	78207208	78207307	6682160	0	+	0.333333	(0.32,0.35]	chr17	652736	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	AFMID	ENSG00000183077.16	ENST00000409257.10:ENST00000327898.9:ENST00000591952.5:ENST00000588800.5:ENST00000589664.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	42	2	2.30673	2.6072949999999997	2.90786	0.0584434	0.00993008	0.167723	0.0877296
chr1	246923159	246923258	681875	0	-	0.494949	(0.476,0.515]	chr1	80043	44	INTRON	INTRON	AHCTF1	ENSG00000153207.16	ENST00000648844.2:ENST00000326225.3:ENST00000366508.5	protein_coding	protein_coding	protein_coding	protein_coding	4	58	2	2.16306	2.60729	3.05152	0.00973468	0.0064848	0.0877284	0.0699952
chr2	65092277	65092376	1142583	0	-	0.414141	(0.408,0.44]	chr2	122174	8	INTRON	INTRON	RAB1A	ENSG00000138069.18	ENST00000649427.1:ENST00000494188.1:ENST00000409784.8:ENST00000409892.5:ENST00000409751.1:ENST00000398529.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	69	2	2.2616	2.6072800000000003	2.95296	0.00929354	0.00321416	0.0817766	0.0523065
chr1	12611171	12611270	379476	0	-	0.444444	(0.44,0.476]	chr1	44547	150	INTRON	INTRON	DHRS3	ENSG00000162496.9	ENST00000616661.5:ENST00000464917.5:ENST00000482265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	49	2	2.19078	2.60722	3.02366	0.0226089	0.00603307	0.117489	0.0700813
chr12	122525382	122525477	5442247	0	-	0.336842	(0.32,0.35]	chr12	520598	18	INTRON	INTRON	RSRC2	ENSG00000111011.18	ENST00000331738.12:ENST00000532695.5:ENST00000433877.6:ENST00000525335.6:ENST00000344591.8:ENST00000527399.3:ENST00000527796.6:ENST00000526560.6:ENST00000527461.5:ENST00000525387.5:ENST00000528279.1:ENST00000525570.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	143	2	2.32485	2.6072100000000002	2.88957	0.00229938	4.39424e-4	0.0428247	0.0189185
chr12	56677038	56677137	5335968	0	-	0.50505	(0.476,0.515]	chr12	510192	36	INTRON	INTRON	PTGES3	ENSG00000110958.16	ENST00000537473.2:ENST00000614328.4:ENST00000262033.11:ENST00000414274.7:ENST00000436399.6:ENST00000448157.6:ENST00000456859.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	67	2	1.63187	2.60715	3.58243	0.037661	6.18479e-4	0.14058	0.0223951
chr21	37481649	37481747	7407383	0	+	0.5	(0.476,0.515]	chr21	754917	1	INTRON	INTRON	DYRK1A	ENSG00000157540.22	ENST00000646523.1:ENST00000647425.1:ENST00000647188.2:ENST00000647504.1:ENST00000644942.1:ENST00000338785.8:ENST00000643624.1:ENST00000426672.6:ENST00000398960.7:ENST00000646548.1:ENST00000645424.1:ENST00000643854.1:ENST00000642309.1:ENST00000645774.1:ENST00000398956.2:ENST00000643355.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	58	2	1.96833	2.607145	3.24596	0.0195007	0.00322919	0.119967	0.0507087
chr2	10143657	10143755	690938	0	+	0.5	(0.476,0.515]	chr2	81101	9	INTRON	INTRON	RRM2	ENSG00000171848.16	ENST00000641498.1:ENST00000646978.1:ENST00000381786.7:ENST00000642996.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	11	165	2	2.36516	2.607135	2.84911	8.6904e-4	6.96651e-5	0.0269837	0.00691946
chr11	108011566	108011666	4855755	0	+	0.35	(0.32,0.35]	chr11	452870	18	INTRON	INTRON	CUL5	ENSG00000166266.14	ENST00000393094.7:ENST00000532064.5:ENST00000526303.1:ENST00000531427.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	95	2	1.437	2.607045	3.77709	0.0386366	5.24715e-4	0.159793	0.0210958
chrX	55024450	55024533	7823240	0	-	0.373494	(0.35,0.378]	chrX	798458	2	SS5_PROX	SS5_PROX:INTRON	ALAS2	ENSG00000158578.21	ENST00000396198.7:ENST00000650242.1:ENST00000335854.8:ENST00000463868.5:ENST00000493869.2:ENST00000477869.6:ENST00000455688.2:ENST00000644983.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	86	2	2.52395	2.6069750000000003	2.69	0.00824736	0.00107271	0.0773378	0.0300133
chr16	89797311	89797411	6544619	0	-	0.47	(0.44,0.476]	chr16	634567	9	INTRON	INTRON	FANCA	ENSG00000187741.16	ENST00000561667.2:ENST00000389301.8:ENST00000568369.6:ENST00000564475.6:ENST00000696275.1:ENST00000696287.1:ENST00000696286.1:ENST00000696274.1:ENST00000696291.1:ENST00000696276.1:ENST00000567205.2:ENST00000567284.7:ENST00000696277.1:ENST00000696292.1:ENST00000563767.2:ENST00000567621.6:ENST00000566409.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	100	2	1.75999	2.6069	3.45381	0.0176116	7.90762e-5	0.105143	0.00739361
chr7	99414545	99414643	3361790	0	+	0.367347	(0.35,0.378]	chr7	313940	22	INTRON	INTRON	BUD31	ENSG00000106245.11	ENST00000403633.6:ENST00000427499.5:ENST00000222969.10:ENST00000496696.5:ENST00000471813.1:ENST00000456893.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	74	2	1.71411	2.60689	3.49967	0.0310697	9.80974e-4	0.13151	0.0287765
chr3	142379183	142379282	1836917	0	-	0.515152	(0.476,0.515]	chr3	184595	22	INTRON	INTRON	XRN1	ENSG00000114127.11	ENST00000264951.8:ENST00000392981.7:ENST00000498077.6:ENST00000472697.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	89	2	2.37295	2.606815	2.84068	0.00217133	0.00193884	0.0417893	0.0409025
chr12	56342392	56342492	5334676	0	-	0.49	(0.476,0.515]	chr12	509746	9	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	STAT2	ENSG00000170581.14	ENST00000314128.9:ENST00000556539.5:ENST00000651301.1:ENST00000651915.1:ENST00000651934.1:ENST00000652091.1:ENST00000651805.1:ENST00000651078.1:ENST00000650805.1:ENST00000652741.1:ENST00000652624.1:ENST00000556140.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	79	2	1.97402	2.60674	3.23946	0.0206778	2.59571e-4	0.110999	0.014326
chr17	37272332	37272429	6761686	0	-	0.237113	[0,0.28]	chr17	664894	11	INTRON	INTRON	ACACA	ENSG00000278540.5	ENST00000616317.5:ENST00000614428.4:ENST00000612895.4:ENST00000617649.4:ENST00000613146.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	52	2	2.57033	2.6067099999999996	2.64309	0.0308646	0.0305273	0.143385	0.13151
chr16	16014928	16015028	6308414	0	+	0.61	(0.57,1]	chr16	603527	3	SS5_PROX	SS5_PROX:INTRON	ABCC1	ENSG00000103222.20	ENST00000574224.2:ENST00000678422.1:ENST00000677164.1:ENST00000399408.7:ENST00000572882.3:ENST00000399410.8:ENST00000679043.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	42	2	2.1643	2.60668	3.04906	0.00941704	4.97245e-4	0.0861183	0.0206993
chr2	47802432	47802530	777236	0	+	0.469388	(0.44,0.476]	chr2	87435	9	INTRON	INTRON	MSH6	ENSG00000116062.18	ENST00000652107.1:ENST00000445503.5:ENST00000614496.4:ENST00000234420.11:ENST00000673637.1:ENST00000540021.6:ENST00000538136.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	68	2	2.33272	2.6066700000000003	2.88062	0.0129984	0.001878	0.0991656	0.039073
chr5	181258361	181258457	2784026	0	-	0.40625	(0.378,0.408]	chr5	262985	10	EXON_MRNA	EXON_MRNA:INTRON	TRIM52	ENSG00000183718.6	ENST00000503005.2:ENST00000513146.1:ENST00000688015.1:ENST00000611618.1:ENST00000691252.1:ENST00000686030.1:ENST00000685507.1:ENST00000510796.2:ENST00000612671.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	94	2	2.12071	2.606645	3.09258	0.00601933	8.09686e-4	0.0700813	0.0263656
chr6	149528571	149528671	3245388	0	-	0.41	(0.408,0.44]	chr6	301508	14	INTRON	INTRON	PPIL4	ENSG00000131013.4	ENST00000253329.3	protein_coding	protein_coding	protein_coding	protein_coding	2	37	2	2.18807	2.6066000000000003	3.02513	0.0708044	0.0059965	0.184528	0.0700606
chr7	10498437	10498537	3481763	0	-	0.43	(0.408,0.44]	chr7	325766	453	INTRON	INTRON	MGC4859	ENSG00000283117.1	ENST00000634803.1	lncRNA	lncRNA	lncRNA	lncRNA	2	37	2	2.18807	2.6066000000000003	3.02513	0.0708044	0.0059965	0.184528	0.0700606
chr17	32351912	32352012	6597998	0	+	0.32	(0.28,0.32]	chr17	641891	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ZNF207	ENSG00000010244.19	ENST00000321233.10:ENST00000394673.6:ENST00000394670.9:ENST00000579634.5:ENST00000580759.5:ENST00000342555.10:ENST00000577908.5:ENST00000394679.9:ENST00000582165.1:ENST00000577324.1:ENST00000578918.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	83	2	2.33381	2.6065750000000003	2.87934	0.0174951	0.00189034	0.104863	0.0402736
chr4	73173084	73173184	2159968	0	-	0.37	(0.35,0.378]	chr4	212788	36	INTRON	INTRON	ANKRD17	ENSG00000132466.20	ENST00000358602.9:ENST00000558247.5:ENST00000330838.10:ENST00000509867.6:ENST00000561029.1:ENST00000559367.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	40	2	2.1617	2.6065300000000002	3.05136	0.0771502	0.00578894	0.196285	0.0684334
chr4	122207540	122207638	2033102	0	+	0.377551	(0.35,0.378]	chr4	201866	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	KIAA1109	ENSG00000138688.17	ENST00000679879.1:ENST00000264501.8:ENST00000684987.1:ENST00000693420.1:ENST00000693334.1:ENST00000690536.1:ENST00000388738.8:ENST00000686075.1:ENST00000688884.1:ENST00000687476.1:ENST00000495260.5:ENST00000690050.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	40	2	2.1617	2.6065300000000002	3.05136	0.0771502	0.00578894	0.196285	0.0684334
chr1	108891663	108891763	179064	0	+	0.49	(0.476,0.515]	chr1	19507	7	INTRON	INTRON	GPSM2	ENSG00000121957.15	ENST00000406462.6:ENST00000675829.1:ENST00000441735.2:ENST00000642355.1:ENST00000435987.5:ENST00000645164.2:ENST00000675776.1:ENST00000264126.9:ENST00000676404.1:ENST00000674731.1:ENST00000674914.1:ENST00000674700.1:ENST00000643094.1:ENST00000675086.1:ENST00000676184.1:ENST00000675087.1:ENST00000675617.1:ENST00000435475.5:ENST00000446797.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	36	2	2.56033	2.6065050000000003	2.65268	0.0287634	0.0201975	0.127066	0.121243
chr22	29972556	29972655	7498423	0	+	0.515152	(0.476,0.515]	chr22	765034	11	INTRON	INTRON	MTMR3	ENSG00000100330.16	ENST00000333027.7:ENST00000401950.7:ENST00000495098.5:ENST00000445401.5:ENST00000323630.9:ENST00000351488.7:ENST00000415511.1:ENST00000406629.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	36	2	2.56033	2.6065050000000003	2.65268	0.0287634	0.0201975	0.127066	0.121243
chr3	107614055	107614155	1470659	0	+	0.48	(0.476,0.515]	chr3	154141	141	INTRON	INTRON	BBX	ENSG00000114439.19	ENST00000415149.6:ENST00000402543.5:ENST00000325805.13:ENST00000485939.5:ENST00000427402.5:ENST00000416476.6:ENST00000454540.5:ENST00000449335.5:ENST00000431630.5:ENST00000458458.5:ENST00000456817.5:ENST00000456419.5:ENST00000402163.6:ENST00000406780.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	36	2	2.56033	2.6065050000000003	2.65268	0.0287634	0.0201975	0.127066	0.121243
chr4	127783157	127783254	2041009	0	+	0.494845	(0.476,0.515]	chr4	202543	1	INTRON	INTRON	HSPA4L	ENSG00000164070.12	ENST00000508776.5:ENST00000296464.9:ENST00000508549.5	protein_coding	protein_coding	protein_coding	protein_coding	2	36	2	2.56033	2.6065050000000003	2.65268	0.0287634	0.0201975	0.127066	0.121243
chr6	140170881	140170981	2968164	0	+	0.51	(0.476,0.515]	chr6	279015	218	INTRON	INTRON	ENSG00000288714	ENSG00000288714.1	ENST00000683950.1	lncRNA	lncRNA	lncRNA	lncRNA	2	36	2	2.56033	2.6065050000000003	2.65268	0.0287634	0.0201975	0.127066	0.121243
chr9	92471657	92471757	4155903	0	+	0.48	(0.476,0.515]	chr9	379002	914	INTRON	INTRON	CENPP	ENSG00000188312.14	ENST00000375587.8	protein_coding	protein_coding	protein_coding	protein_coding	2	36	2	2.56033	2.6065050000000003	2.65268	0.0287634	0.0201975	0.127066	0.121243
chr9	137677107	137677207	4224065	0	+	0.5	(0.476,0.515]	chr9	388198	2	INTRON	INTRON	EHMT1	ENSG00000181090.21	ENST00000462484.5:ENST00000371394.6:ENST00000630754.2:ENST00000460843.6:ENST00000626216.2:ENST00000629335.2:ENST00000637335.1:ENST00000636376.1:ENST00000637655.1:ENST00000636027.1:ENST00000492232.5:ENST00000460486.3:ENST00000636081.1:ENST00000637161.1:ENST00000629417.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	36	2	2.56033	2.6065050000000003	2.65268	0.0287634	0.0201975	0.127066	0.121243
chrX	153914774	153914873	7911573	0	-	0.515152	(0.476,0.515]	chrX	805259	5	INTRON	INTRON	ARHGAP4	ENSG00000089820.16	ENST00000393721.5:ENST00000370028.7:ENST00000420383.5:ENST00000350060.10:ENST00000370016.5:ENST00000470209.5:ENST00000494302.5:ENST00000404127.6:ENST00000494813.5:ENST00000422918.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	36	2	2.56033	2.6065050000000003	2.65268	0.0287634	0.0201975	0.127066	0.121243
chr7	22628812	22628911	3499659	0	-	0.313131	(0.28,0.32]	chr7	326644	557	INTRON	INTRON	STEAP1B	ENSG00000105889.16	ENST00000439708.1:ENST00000442252.1:ENST00000650428.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	83	2	2.50462	2.606465	2.70831	0.0102735	0.00378444	0.0850389	0.0562562
chr7	107144718	107144817	3378172	0	+	0.292929	(0.28,0.32]	chr7	316270	34	INTRON	INTRON	PRKAR2B	ENSG00000005249.13	ENST00000265717.5:ENST00000488792.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	83	2	2.50462	2.606465	2.70831	0.0102735	0.00378444	0.0850389	0.0562562
chr1	29172106	29172205	410346	0	-	0.222222	[0,0.28]	chr1	49420	36	EXON_MRNA	EXON_MRNA:INTRON	SRSF4	ENSG00000116350.18	ENST00000373795.7:ENST00000691479.1:ENST00000634348.1:ENST00000466448.4:ENST00000605204.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	117	2	1.61261	2.6064	3.60019	0.0243731	0.00172089	0.131317	0.0374701
chr6	45324964	45325064	3103459	0	-	0.29	(0.28,0.32]	chr6	290493	16	INTRON	INTRON	SUPT3H	ENSG00000196284.17	ENST00000475057.5:ENST00000371459.6:ENST00000371460.5:ENST00000459689.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	75	2	2.38504	2.6063650000000003	2.82769	0.0169391	0.00475871	0.103888	0.0636201
chr14	102599323	102599423	5822600	0	+	0.59	(0.57,1]	chr14	552490	56	INTRON	INTRON	RCOR1	ENSG00000089902.10	ENST00000262241.7	protein_coding	protein_coding	protein_coding	protein_coding	7	57	2	2.22366	2.606345	2.98903	0.00344378	1.36729e-4	0.0539802	0.0106727
chr9	96418285	96418370	4295374	0	-	0.705882	(0.57,1]	chr9	394976	4	UTR5	UTR5:EXON_MRNA	ZNF367	ENSG00000165244.7	ENST00000375256.5	protein_coding	protein_coding	protein_coding	protein_coding	4	36	2	2.28103	2.606265	2.9315	0.0151554	9.1984e-4	0.108535	0.0278396
chr5	6734210	6734310	2316043	0	+	0.58	(0.57,1]	chr5	224267	187	INTRON	INTRON	TENT4A	ENSG00000112941.14	ENST00000230859.8:ENST00000515721.1:ENST00000631941.2	protein_coding	protein_coding	protein_coding	protein_coding	11	69	2	1.81414	2.6062149999999997	3.39829	0.00327402	6.42666e-5	0.0526715	0.00711194
chr4	126690966	126691066	2237619	0	-	0.36	(0.35,0.378]	chr4	219023	2255	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	26	419	2	2.47107	2.606205	2.74134	1.59417e-4	4.82409e-6	0.0115473	0.00149365
chr22	19417547	19417647	7554283	0	-	0.5	(0.476,0.515]	chr22	772317	64	INTRON	INTRON	HIRA:C22orf39	ENSG00000100084.14:ENSG00000242259.9	ENST00000263208.5:ENST00000340170.8:ENST00000509549.5:ENST00000464189.5:ENST00000452818.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	74	2	1.57103	2.60615	3.64127	0.0307896	6.42302e-4	0.143385	0.0231685
chr16	7998160	7998260	6440490	0	-	0.42	(0.408,0.44]	chr16	620345	199	INTRON	INTRON	ENSG00000260289	ENSG00000260289.2	ENST00000670665.1:ENST00000654046.1:ENST00000567103.2	lncRNA	lncRNA	lncRNA	lncRNA	11	133	2	1.67367	2.60611	3.53855	0.00782801	8.35406e-5	0.0789248	0.00815123
chr16	84987764	84987864	6533930	0	-	0.53	(0.515,0.57]	chr16	633131	54	INTRON	INTRON	ZDHHC7	ENSG00000153786.13	ENST00000313732.9:ENST00000344861.9:ENST00000564466.5:ENST00000569488.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	58	2	2.08547	2.6060999999999996	3.12673	0.0289426	3.95089e-4	0.1274	0.0178567
chr10	125110092	125110191	4713832	0	-	0.545455	(0.515,0.57]	chr10	434907	90	INTRON	INTRON	CTBP2	ENSG00000175029.17	ENST00000337195.9:ENST00000411419.6:ENST00000494626.6:ENST00000531469.5:ENST00000460976.5:ENST00000476817.1:ENST00000530884.1:ENST00000530930.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	42	2	2.08547	2.6060499999999998	3.12663	0.0289426	0.00374498	0.1274	0.0562234
chr19	11089815	11089915	7016815	0	+	0.58	(0.57,1]	chr19	697417	2	SS5_PROX	SS5_PROX:INTRON	LDLR	ENSG00000130164.14	ENST00000557933.5:ENST00000558518.6:ENST00000545707.5:ENST00000535915.5:ENST00000455727.6:ENST00000557958.1:ENST00000560502.5:ENST00000558013.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	77	2	2.32476	2.605945	2.88713	5.62132e-4	7.53251e-5	0.0216503	0.00777227
chr21	6325279	6325379	7364826	0	+	0.31	(0.28,0.32]	chr21	751664	8	INTRON	INTRON	ENSG00000278903	ENSG00000278903.4	ENST00000688458.1:ENST00000689306.1:ENST00000692898.1:ENST00000624576.3:ENST00000623738.3:ENST00000692237.1:ENST00000692046.1:ENST00000689354.1:ENST00000624165.1	lncRNA	lncRNA	lncRNA	lncRNA	5	100	2	2.56765	2.605945	2.64424	0.00835086	0.00159565	0.0774402	0.0367961
chr17	82465714	82465812	6692335	0	+	0.5	(0.476,0.515]	chr17	654561	9	INTRON	INTRON	NARF	ENSG00000141562.19	ENST00000579198.5:ENST00000390006.8:ENST00000583181.5:ENST00000584192.5:ENST00000580296.5:ENST00000345415.11:ENST00000581202.5:ENST00000374611.9:ENST00000457415.7:ENST00000581795.5:ENST00000584411.5:ENST00000577812.5:ENST00000581743.5:ENST00000577432.5:ENST00000582907.5:ENST00000309794.16:ENST00000578082.5:ENST00000580748.1:ENST00000577410.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	26	387	2	2.50104	2.605885	2.71073	3.04196e-5	1.54075e-5	0.00440486	0.00315218
chr13	113638196	113638296	5550379	0	+	0.49	(0.476,0.515]	chr13	530425	3	SS5_PROX	SS5_PROX:INTRON	TFDP1	ENSG00000198176.13	ENST00000375370.10:ENST00000544902.5:ENST00000494812.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	94	2	2.59304	2.605875	2.61871	0.00174257	0.00158794	0.0375363	0.0367961
chr1	45688874	45688974	93586	0	+	0.42	(0.408,0.44]	chr1	12662	2	INTRON	INTRON	TMEM69	ENSG00000159596.7	ENST00000372025.5:ENST00000496366.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	37	2	2.49258	2.605845	2.71911	0.0314608	0.0189489	0.144381	0.108861
chr3	160412949	160412972	1544736	0	+	0.391304	(0.378,0.408]	chr3	160702	1	SS5_PROX	SS5_PROX:INTRON	SMC4	ENSG00000113810.16	ENST00000357388.8:ENST00000469762.5:ENST00000468653.5:ENST00000469858.5:ENST00000489573.5:ENST00000462787.5:ENST00000344722.5:ENST00000497984.5:ENST00000487747.5:ENST00000465563.5:ENST00000494612.1:ENST00000467263.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	84	2	1.53546	2.605775	3.67609	0.0265688	6.32264e-4	0.134088	0.0231174
chr11	85959910	85959998	5013717	0	-	0.363636	(0.35,0.378]	chr11	472899	5	INTRON	INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000530692.5:ENST00000526548.3:ENST00000630913.2:ENST00000529760.5:ENST00000528398.5:ENST00000532603.5:ENST00000356360.9:ENST00000529016.5:ENST00000526961.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	40	2	2.48657	2.6057699999999997	2.72497	0.032907	0.0198266	0.145164	0.109608
chr1	40983556	40983656	83236	0	+	0.34	(0.32,0.35]	chr1	10830	1	SS5_PROX	SS5_PROX:INTRON	CTPS1	ENSG00000171793.17	ENST00000696107.1:ENST00000480420.6:ENST00000650070.2:ENST00000649864.1:ENST00000648914.1:ENST00000648020.2:ENST00000650634.2:ENST00000696108.1:ENST00000463285.7:ENST00000649124.2:ENST00000498694.2:ENST00000696070.1:ENST00000648801.1:ENST00000470271.6:ENST00000696109.1:ENST00000479480.6:ENST00000372616.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	44	2	2.31405	2.60574	2.89743	0.0517107	0.0127608	0.176696	0.0926667
chr2	47446656	47446756	773968	0	+	0.33	(0.32,0.35]	chr2	87279	6	INTRON	INTRON	MSH2	ENSG00000095002.15	ENST00000543555.6:ENST00000644092.1:ENST00000645339.1:ENST00000646415.1:ENST00000645506.1:ENST00000406134.5:ENST00000233146.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	44	2	2.31405	2.60574	2.89743	0.0517107	0.0127608	0.176696	0.0926667
chr22	23228228	23228328	7483684	0	+	0.33	(0.32,0.35]	chr22	763541	285	INTRON	INTRON	BCR	ENSG00000186716.21	ENST00000479188.5:ENST00000359540.7:ENST00000305877.13:ENST00000463770.5:ENST00000487679.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	44	2	2.31405	2.60574	2.89743	0.0517107	0.0127608	0.176696	0.0926667
chr7	119653668	119653768	3627873	0	-	0.27	[0,0.28]	chr7	337315	1532	INTRON	INTRON	LINC02476	ENSG00000225546.6	ENST00000660268.1	lncRNA	lncRNA	lncRNA	lncRNA	5	100	2	1.83604	2.60567	3.3753	0.0268337	0.00242466	0.123442	0.0454587
chr8	52686352	52686428	3950825	0	-	0.473684	(0.44,0.476]	chr8	362383	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RB1CC1	ENSG00000023287.13	ENST00000025008.10:ENST00000435644.6:ENST00000521611.1:ENST00000518710.5:ENST00000517963.1:ENST00000518211.1:ENST00000518468.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	12	171	2	2.31991	2.605665	2.89142	3.60728e-4	1.92791e-4	0.0169463	0.0127226
chr10	70166822	70166922	4640857	0	-	0.41	(0.408,0.44]	chr10	426912	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SAR1A	ENSG00000079332.15	ENST00000373242.6:ENST00000373241.9:ENST00000373239.2	protein_coding	protein_coding	protein_coding	protein_coding	12	180	2	2.24467	2.605645	2.96662	0.00116316	3.24107e-5	0.0312127	0.00453825
chr5	54020609	54020709	2618010	0	-	0.45	(0.44,0.476]	chr5	248835	1086	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	65	2	2.42996	2.605625	2.78129	0.0104804	0.00229634	0.0855777	0.0439319
chr1	23077737	23077832	44362	0	+	0.442105	(0.44,0.476]	chr1	5326	5	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	KDM1A	ENSG00000004487.18	ENST00000692214.1:ENST00000686934.1:ENST00000689853.1:ENST00000465864.2:ENST00000691256.1:ENST00000688122.1:ENST00000692056.1:ENST00000692853.1:ENST00000689366.1:ENST00000686270.1:ENST00000685102.1:ENST00000690627.1:ENST00000686771.1:ENST00000692209.1:ENST00000686339.1:ENST00000691813.1:ENST00000693156.1:ENST00000688235.1:ENST00000692975.1:ENST00000687202.1:ENST00000691682.1:ENST00000691404.1:ENST00000356634.7:ENST00000400181.9:ENST00000689677.1:ENST00000686793.1:ENST00000689971.1:ENST00000688943.1:ENST00000690391.1:ENST00000494920.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	65	2	2.47339	2.6056	2.73781	0.0090196	0.00276493	0.080367	0.04867
chr16	312851	312950	6426457	0	-	0.444444	(0.44,0.476]	chr16	617494	24	INTRON	INTRON	AXIN1	ENSG00000103126.15	ENST00000262320.8:ENST00000461023.5:ENST00000354866.7:ENST00000481769.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	65	2	2.47339	2.6056	2.73781	0.0090196	0.00276493	0.080367	0.04867
chr1	155913728	155913826	564634	0	-	0.357143	(0.35,0.378]	chr1	67435	8	UTR3	UTR3:EXON_MRNA	KHDC4	ENSG00000132680.11	ENST00000368321.8:ENST00000368320.7	protein_coding	protein_coding	protein_coding	protein_coding	18	278	2	2.2396	2.6054399999999998	2.97128	2.42192e-4	4.52251e-5	0.0137115	0.0058121
chr15	50352095	50352194	6171845	0	-	0.383838	(0.378,0.408]	chr15	588168	33	EXON_LNCRNA	EXON_LNCRNA:INTRON	GABPB1:GABPB1-IT1	ENSG00000104064.18:ENSG00000285410.1	ENST00000380877.8:ENST00000220429.12:ENST00000543881.5:ENST00000396464.7:ENST00000429662.6:ENST00000359031.8:ENST00000560825.5:ENST00000558970.2:ENST00000615671.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	5	69	2	1.93153	2.605375	3.27922	0.0127237	0.00312717	0.0986314	0.0499153
chr16	16586686	16586786	6311729	0	+	0.45	(0.44,0.476]	chr16	604098	867	INTRON	INTRON	ENSG00000260126	ENSG00000260126.2	ENST00000567465.2	lncRNA	lncRNA	lncRNA	lncRNA	8	90	2	1.49345	2.60536	3.71727	0.0271885	3.2089e-4	0.123904	0.0159645
chr9	109065964	109066064	4312056	0	-	0.35	(0.32,0.35]	chr9	396343	10	INTRON	INTRON	TMEM245	ENSG00000106771.13	ENST00000374586.8:ENST00000413712.6:ENST00000491854.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	45	2	2.21917	2.60521	2.99125	0.0641245	0.00958447	0.199279	0.0820838
chr12	123362106	123362206	5445181	0	-	0.58	(0.57,1]	chr12	521118	113	INTRON	INTRON	SBNO1	ENSG00000139697.14	ENST00000602398.3:ENST00000267176.8	protein_coding	protein_coding	protein_coding	protein_coding	6	47	2	2.34135	2.6051349999999998	2.86892	0.00191867	0.00125753	0.0405205	0.0323608
chrX	111711078	111711174	7702320	0	+	0.25	[0,0.28]	chrX	788233	17	INTRON	INTRON	ALG13	ENSG00000101901.12	ENST00000487141.5:ENST00000394780.8:ENST00000251943.8:ENST00000610588.4:ENST00000621367.4:ENST00000622997.3:ENST00000624161.3:ENST00000636363.1:ENST00000624881.3:ENST00000495283.5:ENST00000623144.3:ENST00000470971.5:ENST00000623148.3:ENST00000436609.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	107	2	1.73604	2.6051349999999998	3.47423	0.0209881	0.00268371	0.122348	0.0464781
chr2	233294917	233295012	1039816	0	+	0.326316	(0.32,0.35]	chr2	110972	7	UTR3	UTR3:EXON_MRNA	ATG16L1	ENSG00000085978.22	ENST00000347464.9:ENST00000373525.9:ENST00000392021.7:ENST00000392017.9:ENST00000479942.5:ENST00000474148.5:ENST00000392020.8:ENST00000392018.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	78	2	1.72405	2.605125	3.4862	0.0275418	0.001711	0.137011	0.037419
chr5	171390814	171390912	2546595	0	+	0.5	(0.476,0.515]	chr5	243084	8	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	NPM1	ENSG00000181163.14	ENST00000517671.5:ENST00000676613.1:ENST00000678186.1:ENST00000678267.1:ENST00000677297.1:ENST00000521672.6:ENST00000679190.1:ENST00000677467.1:ENST00000678280.1:ENST00000676625.1:ENST00000679006.1:ENST00000351986.10:ENST00000676504.1:ENST00000676589.1:ENST00000677357.1:ENST00000679233.1:ENST00000296930.10:ENST00000393820.2:ENST00000521260.2:ENST00000518587.2:ENST00000678774.1:ENST00000521710.2:ENST00000677600.1:ENST00000677741.1:ENST00000523622.1:ENST00000677325.1:ENST00000677672.1:ENST00000677907.1:ENST00000677904.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	18	288	2	2.47132	2.60511	2.7389	3.53487e-4	1.56791e-5	0.016825	0.00318411
chr17	65050701	65050801	6818361	0	-	0.39	(0.378,0.408]	chr17	674129	320	INTRON	INTRON	GNA13	ENSG00000120063.10	ENST00000439174.7:ENST00000541118.1	protein_coding	protein_coding	protein_coding	protein_coding	5	70	2	1.66594	2.605	3.54406	0.0320222	0.00110718	0.144995	0.0306086
chr22	20734667	20734763	7558406	0	-	0.447917	(0.44,0.476]	chr22	773040	1	SS3_PROX	SS3_PROX:INTRON	PI4KA	ENSG00000241973.11	ENST00000255882.11:ENST00000494113.1:ENST00000477368.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	78	2	2.46422	2.6048400000000003	2.74546	0.00326603	0.00282908	0.0508595	0.0491595
chr11	3870466	3870565	4723611	0	+	0.40404	(0.378,0.408]	chr11	437130	18	INTRON	INTRON	STIM1	ENSG00000167323.12	ENST00000525403.5:ENST00000526596.2:ENST00000300737.8:ENST00000616714.4:ENST00000527651.5:ENST00000532610.5:ENST00000532919.5:ENST00000530554.5	protein_coding	protein_coding	protein_coding	protein_coding	6	78	2	1.44787	2.60481	3.76175	0.0496837	2.68579e-4	0.156383	0.0145349
chr1	77614851	77614951	492779	0	-	0.43	(0.408,0.44]	chr1	58292	298	INTRON	INTRON	ZZZ3	ENSG00000036549.13	ENST00000370801.8:ENST00000481346.5:ENST00000476275.5:ENST00000370798.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	67	2	1.79818	2.6048099999999996	3.41144	0.020428	0.00178336	0.122109	0.0379201
chr1	213108055	213108155	311273	0	+	0.27	[0,0.28]	chr1	35925	31	INTRON	INTRON	RPS6KC1	ENSG00000136643.12	ENST00000615329.4:ENST00000543354.5:ENST00000614059.4:ENST00000543470.5:ENST00000366960.8:ENST00000366959.4:ENST00000490299.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	71	2	2.54624	2.60472	2.6632	0.0388449	0.00515076	0.143072	0.0650394
chr2	20307377	20307477	1076340	0	-	0.23	[0,0.28]	chr2	114994	93	INTRON	INTRON	PUM2	ENSG00000055917.16	ENST00000338086.9:ENST00000361078.7:ENST00000440577.5	protein_coding	protein_coding	protein_coding	protein_coding	3	71	2	2.54624	2.60472	2.6632	0.0388449	0.00515076	0.143072	0.0650394
chr7	87157781	87157880	3345676	0	+	0.262626	[0,0.28]	chr7	311631	19	INTRON	INTRON	DMTF1	ENSG00000135164.19	ENST00000413276.6:ENST00000447863.5:ENST00000579677.5:ENST00000425406.5:ENST00000446796.6:ENST00000420131.5:ENST00000414630.6:ENST00000547146.6:ENST00000579850.5:ENST00000453049.5:ENST00000331242.12:ENST00000430405.7:ENST00000449088.7:ENST00000448598.5:ENST00000428819.5:ENST00000432937.6:ENST00000584619.5:ENST00000432366.6:ENST00000423590.6:ENST00000394703.9:ENST00000584457.5:ENST00000580710.5:ENST00000579592.5:ENST00000434534.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	126	2	1.53862	2.60471	3.6708	0.0254957	0.00133013	0.133676	0.0334189
chr10	130181990	130182089	4536796	0	+	0.606061	(0.57,1]	chr10	418838	20	UTR3	UTR3:EXON_MRNA:INTRON	GLRX3	ENSG00000108010.12	ENST00000481034.1:ENST00000368644.5:ENST00000619341.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	36	2	1.71424	2.604705	3.49517	0.0279017	6.03609e-4	0.137011	0.0226059
chr6	63651386	63651485	2883446	0	+	0.575758	(0.57,1]	chr6	273559	42	INTRON	INTRON	PHF3	ENSG00000118482.12	ENST00000262043.8:ENST00000506783.5:ENST00000481385.6:ENST00000515594.5:ENST00000494284.6:ENST00000509876.5:ENST00000509330.5:ENST00000393387.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	36	2	1.71424	2.604705	3.49517	0.0279017	6.03609e-4	0.137011	0.0226059
chr2	87483404	87483504	826206	0	+	0.52	(0.515,0.57]	chr2	92432	24	INTRON	INTRON	CYTOR:ENSG00000284879	ENSG00000222041.12:ENSG00000284879.1	ENST00000642796.1:ENST00000643589.1:ENST00000642451.1:ENST00000646386.1:ENST00000644478.1:ENST00000409139.6:ENST00000331944.10:ENST00000644125.1:ENST00000643743.1:ENST00000644577.1:ENST00000643276.1:ENST00000409898.2:ENST00000419680.6:ENST00000644976.1:ENST00000643070.1:ENST00000646855.1:ENST00000414584.1:ENST00000455131.5:ENST00000646636.1:ENST00000642293.1:ENST00000423846.5:ENST00000644040.1:ENST00000645138.1:ENST00000437561.2:ENST00000629257.1	lncRNA	lncRNA	lncRNA	lncRNA	4	50	2	2.06206	2.60468	3.1473	0.0135396	0.00397184	0.101363	0.0549214
chr19	5086194	5086293	7004602	0	+	0.606061	(0.57,1]	chr19	694855	33	INTRON	INTRON	KDM4B	ENSG00000127663.15	ENST00000159111.9:ENST00000611640.4:ENST00000381759.8:ENST00000536461.5:ENST00000589104.5:ENST00000588961.1:ENST00000588361.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	42	2	2.01216	2.604615	3.19707	0.0163389	2.16062e-4	0.101571	0.0129138
chr20	63875415	63875515	7300789	0	+	0.44	(0.408,0.44]	chr20	743103	2	SS3_PROX	SS3_PROX:INTRON	TPD52L2	ENSG00000101150.18	ENST00000611972.4:ENST00000615907.4:ENST00000369927.8:ENST00000346249.9:ENST00000348257.9:ENST00000352482.8:ENST00000351424.8:ENST00000217121.9:ENST00000358548.4	protein_coding	protein_coding	protein_coding	protein_coding	14	153	2	1.67068	2.604615	3.53855	0.00488166	8.35406e-5	0.0640618	0.00815123
chr1	29149326	29149418	410106	0	-	0.521739	(0.515,0.57]	chr1	49379	1	SS3_PROX	SS3_PROX:INTRON	SRSF4	ENSG00000116350.18	ENST00000373795.7:ENST00000691479.1:ENST00000634348.1:ENST00000466448.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	42	2	2.15051	2.60445	3.05839	0.0238113	0.00485936	0.118889	0.0640618
chr15	72533125	72533225	6059750	0	+	0.56	(0.515,0.57]	chr15	576864	146	INTRON	INTRON	ARIH1	ENSG00000166233.15	ENST00000379887.9:ENST00000570085.5:ENST00000564062.1:ENST00000567762.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	42	2	2.15051	2.60445	3.05839	0.0238113	0.00485936	0.118889	0.0640618
chr22	22319950	22320050	7483054	0	+	0.52	(0.515,0.57]	chr22	763475	3	INTRON	INTRON	ENSG00000286129	ENSG00000286129.1	ENST00000652112.1	lncRNA	lncRNA	lncRNA	lncRNA	3	42	2	2.15051	2.60445	3.05839	0.0238113	0.00485936	0.118889	0.0640618
chr16	204012	204111	6425928	0	-	0.323232	(0.32,0.35]	chr16	617421	44	INTRON	INTRON	LUC7L	ENSG00000007392.17	ENST00000337351.8:ENST00000426094.5:ENST00000397783.5:ENST00000629543.2:ENST00000490762.5:ENST00000293872.13:ENST00000429378.5:ENST00000464711.5:ENST00000419516.5:ENST00000397780.5:ENST00000495349.5:ENST00000418978.5:ENST00000430864.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	68	2	1.93031	2.604445	3.27858	0.0231421	0.00368368	0.126939	0.0535094
chr12	50404511	50404611	5136369	0	+	0.44	(0.408,0.44]	chr12	484352	13	INTRON	INTRON	LARP4	ENSG00000161813.23	ENST00000550522.5:ENST00000293618.12:ENST00000429001.7:ENST00000398473.7:ENST00000548174.5:ENST00000548697.5:ENST00000548993.5:ENST00000522085.5:ENST00000518444.5:ENST00000551886.5:ENST00000523389.5:ENST00000518561.5:ENST00000347328.9:ENST00000550260.1:ENST00000517559.5:ENST00000552445.1	protein_coding	protein_coding	protein_coding	protein_coding	9	131	2	2.3014	2.604435	2.90747	8.86465e-4	4.77325e-4	0.0271952	0.0202392
chr5	145775191	145775291	2746037	0	-	0.42	(0.408,0.44]	chr5	258689	98	INTRON	INTRON	PRELID2	ENSG00000186314.12	ENST00000510594.1:ENST00000683046.1:ENST00000334744.8:ENST00000394450.6:ENST00000505416.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	50	2	1.74775	2.6043950000000002	3.46104	0.0735403	0.00105552	0.190238	0.0299229
chr14	34451998	34452098	5866035	0	-	0.54	(0.515,0.57]	chr14	557089	163	INTRON	INTRON	EGLN3:SPTSSA	ENSG00000129521.15:ENSG00000165389.7	ENST00000551935.5:ENST00000298130.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	58	2	1.62814	2.60439	3.58064	0.035203	6.54693e-4	0.150193	0.0233335
chr15	84229151	84229251	6250714	0	-	0.29	(0.28,0.32]	chr15	596495	235	INTRON	INTRON	GOLGA2P7	ENSG00000225151.10	ENST00000400817.7:ENST00000559668.5:ENST00000316967.10:ENST00000559654.5:ENST00000557980.5:ENST00000557881.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	3	61	2	2.42868	2.60436	2.78004	0.0193244	0.0105331	0.108861	0.0908969
chr1	88728895	88728995	156215	0	+	0.45	(0.44,0.476]	chr1	17045	439	INTRON	INTRON	PKN2	ENSG00000065243.20	ENST00000316005.11:ENST00000370521.8:ENST00000370513.9	protein_coding	protein_coding	protein_coding	protein_coding	4	65	2	2.38519	2.60435	2.82351	0.012193	0.00191049	0.0910127	0.0403772
chr2	157273205	157273305	896673	0	+	0.31	(0.28,0.32]	chr2	99276	133	INTRON	INTRON	GALNT5	ENSG00000136542.9	ENST00000259056.5	protein_coding	protein_coding	protein_coding	protein_coding	2	47	2	2.38101	2.60435	2.82769	0.0456017	0.0169391	0.164236	0.103888
chr22	21980126	21980224	7562001	0	-	0.5	(0.476,0.515]	chr22	773552	36	INTRON	INTRON	TOP3B	ENSG00000100038.20	ENST00000357179.10:ENST00000457179.5:ENST00000444502.5:ENST00000398793.6:ENST00000424393.5:ENST00000437929.5:ENST00000430142.5:ENST00000456075.5:ENST00000449704.5:ENST00000437103.1:ENST00000434517.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	78	2	2.3346	2.60433	2.87406	0.00494807	0.00188729	0.0646039	0.0391691
chr9	97004876	97004975	4298902	0	-	0.444444	(0.44,0.476]	chr9	395262	316	INTRON	INTRON	MFSD14C	ENSG00000196312.15	ENST00000647176.1:ENST00000645073.1:ENST00000637864.1:ENST00000652726.1:ENST00000637811.1:ENST00000650909.1	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript:transcribed_unprocessed_pseudogene	4	58	2	2.12992	2.6042699999999996	3.07862	0.010975	0.0060153	0.092635	0.0674604
chr1	65275112	65275212	135744	0	+	0.29	(0.28,0.32]	chr1	15346	98	INTRON	INTRON	DNAJC6	ENSG00000116675.16	ENST00000463018.5:ENST00000494710.6:ENST00000263441.11:ENST00000395325.7:ENST00000483402.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	61	2	2.28998	2.6042449999999997	2.91851	0.0166401	0.0130672	0.110511	0.093385
chr6	16136596	16136695	2825848	0	+	0.40404	(0.378,0.408]	chr6	265309	55	INTRON	INTRON	MYLIP	ENSG00000007944.15	ENST00000356840.8:ENST00000349606.4	protein_coding	protein_coding	protein_coding	protein_coding	7	86	2	1.97139	2.604235	3.23708	0.00460762	0.00365053	0.0625743	0.0535094
chr19	2198991	2199089	6996529	0	+	0.44898	(0.44,0.476]	chr19	693461	41	INTRON	INTRON	DOT1L	ENSG00000104885.19	ENST00000398665.8:ENST00000686010.1:ENST00000452696.5	protein_coding	protein_coding	protein_coding	protein_coding	4	58	2	2.03266	2.60419	3.17572	0.0155853	0.00427037	0.109411	0.0573912
chr5	139330784	139330883	2499770	0	+	0.464646	(0.44,0.476]	chr5	238982	15	UTR3	UTR3:EXON_MRNA	MATR3	ENSG00000280987.4:ENSG00000015479.20	ENST00000394800.6:ENST00000394805.8	protein_coding	protein_coding	protein_coding	protein_coding	4	58	2	2.03266	2.60419	3.17572	0.0155853	0.00427037	0.109411	0.0573912
chr11	64772631	64772730	4965246	0	-	0.323232	(0.32,0.35]	chr11	467532	7	INTRON	INTRON	SF1	ENSG00000168066.21	ENST00000334944.9:ENST00000227503.13:ENST00000377394.7:ENST00000448404.5:ENST00000377390.8:ENST00000377387.5:ENST00000681407.1:ENST00000433274.6:ENST00000633899.1:ENST00000413951.5:ENST00000432725.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	92	2	2.27939	2.60416	2.92893	0.00844518	0.00138	0.0776969	0.0341261
chr20	32115932	32116032	7254370	0	+	0.49	(0.476,0.515]	chr20	736838	55	INTRON	INTRON	TM9SF4	ENSG00000101337.16	ENST00000398022.7:ENST00000442842.5:ENST00000450829.5:ENST00000217315.9:ENST00000417389.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	79	2	2.20789	2.60412	3.00035	0.00820497	0.00109036	0.081115	0.0303873
chr9	109096573	109096672	4312369	0	-	0.494949	(0.476,0.515]	chr9	396380	26	INTRON	INTRON	TMEM245	ENSG00000106771.13	ENST00000374586.8:ENST00000491854.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	79	2	2.20789	2.60412	3.00035	0.00820497	0.00109036	0.081115	0.0303873
chr11	3368955	3369050	4893748	0	-	0.336842	(0.32,0.35]	chr11	458677	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ZNF195	ENSG00000005801.18	ENST00000528796.5:ENST00000399602.9:ENST00000354599.10:ENST00000343338.11:ENST00000620374.4:ENST00000649622.1:ENST00000429541.6:ENST00000005082.13:ENST00000526601.5:ENST00000438262.6:ENST00000528410.5:ENST00000528218.5:ENST00000529789.5:ENST00000525313.6:ENST00000533036.5:ENST00000529228.5:ENST00000529678.5:ENST00000427810.6:ENST00000534569.5:ENST00000524857.5:ENST00000530643.5:ENST00000618467.4:ENST00000330692.11:ENST00000525502.5:ENST00000526501.5:ENST00000532539.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	69	2	1.92705	2.60406	3.28107	0.0267365	0.00262488	0.123349	0.0470772
chr21	44041316	44041416	7415324	0	+	0.31	(0.28,0.32]	chr21	755795	30	INTRON	INTRON	TRAPPC10	ENSG00000160218.13	ENST00000291574.9:ENST00000380221.7:ENST00000422875.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	100	2	2.20515	2.60403	3.00291	0.011946	0.00110829	0.0899583	0.0305035
chr10	49959976	49960075	4432811	0	+	0.474747	(0.44,0.476]	chr10	408699	11	INTRON	INTRON	TIMM23B:TIMM23B-AGAP6	ENSG00000204152.14:ENSG00000178440.8	ENST00000478381.5:ENST00000651259.3:ENST00000651763.1:ENST00000651208.1:ENST00000652716.1:ENST00000483296.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	102	2	2.15426	2.603995	3.05373	0.00372059	6.56725e-4	0.0535094	0.0232396
chr1	52407107	52407203	103724	0	+	0.520833	(0.515,0.57]	chr1	13587	9	INTRON	INTRON	PRPF38A	ENSG00000134748.13	ENST00000257181.10:ENST00000487160.1:ENST00000474048.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	50	2	2.11724	2.60363	3.09002	0.0110335	0.00491099	0.0927187	0.0609494
chr20	38081898	38081998	7269367	0	+	0.36	(0.35,0.378]	chr20	738717	114	INTRON	INTRON	RPRD1B	ENSG00000101413.12	ENST00000462548.6:ENST00000373433.9:ENST00000449186.2:ENST00000618318.1:ENST00000614670.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	71	2	2.48623	2.60358	2.72093	0.00938784	0.00314173	0.0817766	0.0514466
chr21	43898869	43898969	7414127	0	+	0.41	(0.408,0.44]	chr21	755692	159	INTRON	INTRON	AGPAT3	ENSG00000160216.21	ENST00000291572.13:ENST00000448287.5:ENST00000398061.5	protein_coding	protein_coding	protein_coding	protein_coding	5	68	2	1.69979	2.60355	3.50731	0.0310346	8.5918e-4	0.13151	0.0265787
chr6	37855997	37856097	2857395	0	+	0.44	(0.408,0.44]	chr6	270225	356	INTRON	INTRON	ZFAND3	ENSG00000156639.12	ENST00000287218.9:ENST00000373391.6:ENST00000474522.5	protein_coding	protein_coding	protein_coding	protein_coding	5	79	2	2.53313	2.603525	2.67392	0.00739595	0.00106946	0.074277	0.0300133
chr19	21732985	21733085	7158952	0	-	0.38	(0.378,0.408]	chr19	723706	46	INTRON	INTRON	ZNF100	ENSG00000197020.12	ENST00000358296.11:ENST00000305570.10:ENST00000594401.1	protein_coding	protein_coding	protein_coding	protein_coding	5	82	2	2.31181	2.6034949999999997	2.89518	0.00548372	0.00190046	0.0671431	0.0393643
chr7	5408291	5408391	3471928	0	-	0.45	(0.44,0.476]	chr7	324678	10	INTRON	INTRON	TNRC18	ENSG00000182095.15	ENST00000399537.8:ENST00000430969.6:ENST00000399434.2	protein_coding	protein_coding	protein_coding	protein_coding	5	78	2	2.42643	2.603445	2.78046	0.0033369	0.0028389	0.0528877	0.0473151
chr5	168561716	168561816	2770540	0	-	0.26	[0,0.28]	chr5	260728	2	SS3_PROX	SS3_PROX:INTRON	PANK3	ENSG00000120137.7	ENST00000239231.7:ENST00000520504.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	73	2	2.38757	2.603435	2.8193	0.0552962	0.00285248	0.165463	0.0494641
chr16	71751835	71751935	6513882	0	-	0.3	(0.28,0.32]	chr16	631116	6	INTRON	INTRON	AP1G1	ENSG00000166747.13	ENST00000299980.9:ENST00000569748.5:ENST00000393512.7:ENST00000565009.5:ENST00000565642.5:ENST00000568327.5:ENST00000566179.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	64	2	2.39347	2.6034050000000004	2.81334	0.0504457	0.00248627	0.156383	0.0461207
chrX	111696954	111697053	7702176	0	+	0.323232	(0.32,0.35]	chrX	788221	69	INTRON	INTRON	ALG13	ENSG00000101901.12	ENST00000487141.5:ENST00000394780.8:ENST00000251943.8:ENST00000610588.4:ENST00000621367.4:ENST00000622997.3:ENST00000624161.3:ENST00000636363.1:ENST00000624881.3:ENST00000495283.5:ENST00000486353.5:ENST00000623144.3:ENST00000470971.5:ENST00000623148.3:ENST00000471924.5:ENST00000436609.5:ENST00000470704.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	150	2	1.19117	2.60339	4.01561	0.0673949	3.78116e-6	0.183375	0.00128142
chr18	9487426	9487526	6871253	0	+	0.28	[0,0.28]	chr18	680716	76	INTRON	INTRON	RALBP1	ENSG00000017797.13	ENST00000019317.8:ENST00000585015.6:ENST00000383432.8:ENST00000609094.2:ENST00000458039.3:ENST00000577221.1	protein_coding	protein_coding	protein_coding	protein_coding	5	98	2	2.19386	2.603365	3.01287	0.0115634	0.00599636	0.0889104	0.0700606
chr7	885077	885175	3269195	0	+	0.387755	(0.378,0.408]	chr7	303678	8	UTR5	UTR5:EXON_MRNA:INTRON	SUN1:GET4	ENSG00000164828.18:ENSG00000239857.7	ENST00000457861.1:ENST00000265857.8:ENST00000412734.6:ENST00000407192.5:ENST00000441491.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	155	2	2.48582	2.603365	2.72091	5.24084e-4	3.3417e-4	0.0210958	0.0162699
chr6	26283945	26284043	3071127	0	-	0.540816	(0.515,0.57]	chr6	285471	20	INTRON	INTRON	H4C8	ENSG00000158406.6	ENST00000634956.1:ENST00000634560.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	12	140	2	2.10708	2.6033549999999996	3.09963	9.54513e-4	9.06736e-5	0.0282401	0.00796627
chr19	10806749	10806843	7014682	0	+	0.43617	(0.408,0.44]	chr19	697017	4	INTRON	INTRON	DNM2	ENSG00000079805.19	ENST00000355667.11:ENST00000389253.9:ENST00000585892.5:ENST00000359692.10:ENST00000408974.8:ENST00000587830.2:ENST00000681972.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	108	2	2.59487	2.603335	2.6118	0.00202403	5.80745e-4	0.04086	0.0218949
chr1	162507428	162507527	238090	0	+	0.424242	(0.408,0.44]	chr1	28666	32	INTRON	INTRON	UHMK1	ENSG00000152332.16	ENST00000545294.5:ENST00000538489.5:ENST00000489294.2:ENST00000282169.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	49	2	2.00228	2.603325	3.20437	0.0389732	0.00306596	0.143072	0.0509893
chr2	24806811	24806910	712225	0	+	0.414141	(0.408,0.44]	chr2	82368	66	INTRON	INTRON	CENPO	ENSG00000138092.11	ENST00000473706.5:ENST00000491031.5:ENST00000380834.7:ENST00000486527.6:ENST00000260662.2:ENST00000498362.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	49	2	2.00228	2.603325	3.20437	0.0389732	0.00306596	0.143072	0.0509893
chr16	11739008	11739107	6445164	0	-	0.333333	(0.32,0.35]	chr16	620837	24	INTRON	INTRON	TXNDC11	ENSG00000153066.13	ENST00000283033.10:ENST00000356957.7:ENST00000576969.5:ENST00000573174.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	76	2	2.4961	2.6033150000000003	2.71053	0.00967886	0.00346747	0.0828038	0.0539802
chr2	200855586	200855685	1310017	0	-	0.444444	(0.44,0.476]	chr2	137022	1	INTRON	INTRON	CLK1	ENSG00000013441.17	ENST00000321356.9:ENST00000461981.5:ENST00000473565.5:ENST00000432425.5:ENST00000409769.6:ENST00000409403.6:ENST00000434813.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	49	2	2.59888	2.60331	2.60774	0.0255874	0.00487719	0.120269	0.0640618
chr4	3080067	3080166	1917111	0	+	0.424242	(0.408,0.44]	chr4	192501	46	INTRON	INTRON	HTT	ENSG00000197386.14	ENST00000680956.1:ENST00000680360.1:ENST00000681528.1:ENST00000680239.1:ENST00000649900.1:ENST00000355072.11:ENST00000680291.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	49	2	2.05947	2.6032650000000004	3.14706	0.0333232	0.00382411	0.134145	0.0562562
chr7	111485868	111485965	3623346	0	-	0.412371	(0.408,0.44]	chr7	337112	18	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000452895.5:ENST00000447215.5:ENST00000492938.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	49	2	2.05947	2.6032650000000004	3.14706	0.0333232	0.00382411	0.134145	0.0562562
chr15	41301037	41301137	6004559	0	+	0.58	(0.57,1]	chr15	571273	31	EXON_LNCRNA	EXON_LNCRNA:INTRON	OIP5-AS1	ENSG00000247556.6	ENST00000500949.6:ENST00000501665.2	lncRNA	lncRNA	lncRNA	lncRNA	8	57	2	1.70481	2.60321	3.50161	0.0130959	3.17447e-5	0.0934992	0.00449886
chr10	124815279	124815378	4535040	0	+	0.535354	(0.515,0.57]	chr10	418519	80	INTRON	INTRON	ABRAXAS2	ENSG00000165660.8	ENST00000298492.6	protein_coding	protein_coding	protein_coding	protein_coding	3	43	2	2.52504	2.60318	2.68132	0.029342	0.00324198	0.128055	0.0524329
chr14	21260718	21260817	5835080	0	-	0.50505	(0.476,0.515]	chr14	554465	58	INTRON	INTRON	HNRNPC	ENSG00000092199.19	ENST00000336053.10:ENST00000553300.6:ENST00000554969.5:ENST00000556142.5:ENST00000554455.5:ENST00000430246.6:ENST00000553753.5:ENST00000555309.5:ENST00000555914.5:ENST00000557442.5:ENST00000556628.5:ENST00000556513.5:ENST00000555883.5:ENST00000557201.5:ENST00000556897.5:ENST00000420743.6:ENST00000554539.5:ENST00000554383.5:ENST00000555215.5:ENST00000555137.5:ENST00000554891.5:ENST00000556226.5:ENST00000555176.5:ENST00000553614.5:ENST00000557336.1:ENST00000557768.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	48	2	2.32001	2.603155	2.8863	0.0136217	0.0111679	0.101682	0.0877435
chr19	39355043	39355138	7067324	0	+	0.484211	(0.476,0.515]	chr19	705687	6	INTRON	INTRON	SAMD4B	ENSG00000179134.16	ENST00000610417.5:ENST00000598913.5:ENST00000314471.10:ENST00000599712.1	protein_coding	protein_coding	protein_coding	protein_coding	3	48	2	2.32001	2.603155	2.8863	0.0136217	0.0111679	0.101682	0.0877435
chr11	120379602	120379702	4876632	0	+	0.33	(0.32,0.35]	chr11	455798	420	INTRON	INTRON	ARHGEF12	ENSG00000196914.9	ENST00000397843.7:ENST00000356641.7	protein_coding	protein_coding	protein_coding	protein_coding	3	57	2	1.83416	2.60313	3.3721	0.0631198	0.00182912	0.176946	0.0396683
chr2	26255073	26255172	714264	0	+	0.363636	(0.35,0.378]	chr2	82487	2	INTRON	INTRON	HADHB	ENSG00000138029.14	ENST00000448743.5:ENST00000537713.5:ENST00000405867.7:ENST00000317799.10:ENST00000425035.5:ENST00000412805.5	protein_coding	protein_coding	protein_coding	protein_coding	3	53	2	1.98929	2.60303	3.21677	0.0417909	0.00313804	0.147075	0.0514466
chr7	151073409	151073506	3448300	0	+	0.484536	(0.476,0.515]	chr7	322123	9	INTRON	INTRON	SLC4A2	ENSG00000164889.15	ENST00000485713.5:ENST00000413384.7:ENST00000677246.1:ENST00000392826.6:ENST00000461735.1:ENST00000460010.1:ENST00000482697.1:ENST00000472204.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	58	2	1.91525	2.602995	3.29074	0.0232571	0.00272563	0.127416	0.0467523
chr1	19616072	19616170	40587	0	+	0.561224	(0.515,0.57]	chr1	4754	11	INTRON	INTRON	MICOS10	ENSG00000173436.15	ENST00000648702.1:ENST00000617872.4:ENST00000322753.7:ENST00000486890.5:ENST00000462646.5:ENST00000467029.5:ENST00000481464.5:ENST00000498642.5:ENST00000485362.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	56	2	2.32967	2.602965	2.87626	0.0133671	0.00136224	0.0946278	0.0339121
chr16	24738968	24739068	6329306	0	+	0.52	(0.515,0.57]	chr16	605933	83	INTRON	INTRON	TNRC6A	ENSG00000090905.19	ENST00000566108.2:ENST00000395799.8:ENST00000315183.11:ENST00000562829.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	56	2	2.32967	2.602965	2.87626	0.0133671	0.00136224	0.0946278	0.0339121
chr2	61510929	61511029	1130944	0	-	0.33	(0.32,0.35]	chr2	121599	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	XPO1	ENSG00000082898.19	ENST00000677110.1:ENST00000676553.1:ENST00000677556.1:ENST00000677814.1:ENST00000676771.1:ENST00000677803.1:ENST00000677239.1:ENST00000678790.1:ENST00000677928.1:ENST00000678182.1:ENST00000677150.1:ENST00000678172.1:ENST00000678360.1:ENST00000678081.1:ENST00000676889.1:ENST00000676783.1:ENST00000679035.1:ENST00000677422.1:ENST00000677417.1:ENST00000677813.1:ENST00000676999.1:ENST00000676667.1:ENST00000678263.1:ENST00000678877.1:ENST00000677933.1:ENST00000680228.1:ENST00000677289.1:ENST00000677190.1:ENST00000401558.7:ENST00000428210.5:ENST00000677290.1:ENST00000677850.1:ENST00000451765.6:ENST00000676789.1:ENST00000678741.1:ENST00000404992.6:ENST00000406957.5:ENST00000443240.5:ENST00000476585.5:ENST00000468259.1:ENST00000420673.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	24	406	2	1.95424	2.60296	3.25168	0.00171983	7.96021e-7	0.0374701	5.03146e-4
chr8	129569821	129569921	4060985	0	-	0.27	[0,0.28]	chr8	369672	127	INTRON	INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1:ENST00000676273.1:ENST00000667643.1:ENST00000668791.1:ENST00000663716.1:ENST00000663572.1:ENST00000676148.1:ENST00000667962.1:ENST00000674877.1:ENST00000675316.1:ENST00000674656.1:ENST00000446592.7:ENST00000667341.1:ENST00000675186.1:ENST00000652971.1:ENST00000661447.1:ENST00000674863.1:ENST00000675498.1:ENST00000675527.1:ENST00000676108.1:ENST00000657647.1:ENST00000675589.1:ENST00000675913.1:ENST00000675109.1:ENST00000671632.1:ENST00000671311.1:ENST00000676099.1:ENST00000660652.1:ENST00000675522.1:ENST00000675044.1:ENST00000675435.1:ENST00000674639.1:ENST00000676069.1:ENST00000675532.1:ENST00000674762.1:ENST00000523151.6:ENST00000675948.1:ENST00000665364.1:ENST00000657251.1:ENST00000675166.1:ENST00000674883.1:ENST00000675867.1:ENST00000674580.1:ENST00000675393.1:ENST00000520048.1:ENST00000674906.1:ENST00000676030.1:ENST00000670588.1:ENST00000675072.1:ENST00000664936.1:ENST00000652914.1:ENST00000657069.1:ENST00000674882.1	lncRNA	lncRNA	lncRNA	lncRNA	9	202	2	2.31678	2.60296	2.88914	0.00364234	2.68889e-4	0.0535094	0.0145349
chr6	154745814	154745914	3001941	0	+	0.33	(0.32,0.35]	chr6	280737	34	INTRON	INTRON	SCAF8	ENSG00000213079.10	ENST00000367186.7:ENST00000417268.3:ENST00000461219.5:ENST00000367178.8:ENST00000464628.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	127	2	2.05211	2.6029400000000003	3.15377	0.0106769	1.07848e-4	0.0861859	0.00878438
chr1	10493375	10493474	23160	0	+	0.444444	(0.44,0.476]	chr1	2497	180	INTRON	INTRON	PEX14	ENSG00000142655.13	ENST00000472851.1:ENST00000356607.9:ENST00000491661.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	59	2	1.61163	2.6029	3.59417	0.0598319	5.78231e-4	0.169278	0.0218253
chr8	102400284	102400384	4012632	0	-	0.42	(0.408,0.44]	chr8	367237	383	INTRON	INTRON	UBR5	ENSG00000104517.13	ENST00000520539.6:ENST00000220959.8:ENST00000521922.5	protein_coding	protein_coding	protein_coding	protein_coding	7	100	2	2.28537	2.60285	2.92033	0.00162151	0.00158783	0.0367961	0.0367655
chr21	43682878	43682978	7413003	0	+	0.53	(0.515,0.57]	chr21	755444	2	SS3_PROX	SS3_PROX:INTRON	RRP1B	ENSG00000160208.13	ENST00000340648.6	protein_coding	protein_coding	protein_coding	protein_coding	6	77	2	2.07721	2.60283	3.12845	0.0067022	4.79786e-4	0.0738715	0.0203136
chr5	43298330	43298423	2614281	0	-	0.290323	(0.28,0.32]	chr5	248516	3	EXON_MRNA	EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HMGCS1	ENSG00000112972.15	ENST00000325110.11:ENST00000433297.2:ENST00000507004.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	96	2	2.08221	2.6027649999999998	3.12332	0.00698537	0.00506211	0.0718189	0.0646039
chr6	87219917	87220015	2913908	0	+	0.438776	(0.408,0.44]	chr6	275307	8	INTRON	INTRON	ZNF292	ENSG00000188994.13	ENST00000369577.8:ENST00000369578.6:ENST00000518845.1:ENST00000339907.8:ENST00000496806.2:ENST00000524067.5:ENST00000485016.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	82	2	2.08376	2.602735	3.12171	0.0129886	6.63666e-4	0.0991656	0.0234815
chr8	21940391	21940491	3711125	0	+	0.43	(0.408,0.44]	chr8	344395	184	INTRON	INTRON	XPO7	ENSG00000130227.17	ENST00000252512.14:ENST00000521303.5:ENST00000519769.5:ENST00000518017.1:ENST00000520754.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	49	2	2.55103	2.602615	2.6542	0.0227514	0.00587353	0.117618	0.0690758
chr2	39417996	39418096	1104108	0	-	0.47	(0.44,0.476]	chr2	118511	383	INTRON	INTRON	MAP4K3	ENSG00000011566.15	ENST00000263881.8:ENST00000341681.9:ENST00000429397.5:ENST00000437968.1:ENST00000484274.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	36	2	2.46135	2.602535	2.74372	0.0374637	0.0153007	0.140008	0.108569
chr21	22247309	22247409	7384841	0	+	0.45	(0.44,0.476]	chr21	752727	341	INTRON	INTRON	ENSG00000226043	ENSG00000226043.2	ENST00000667099.1:ENST00000654607.1:ENST00000444130.1	lncRNA	lncRNA	lncRNA	lncRNA	2	36	2	2.46135	2.602535	2.74372	0.0374637	0.0153007	0.140008	0.108569
chr22	19515548	19515643	7477206	0	+	0.442105	(0.44,0.476]	chr22	762466	1	INTRON	INTRON	CDC45	ENSG00000093009.11	ENST00000407835.6:ENST00000437685.6:ENST00000438587.6:ENST00000672837.1:ENST00000263201.7:ENST00000404724.7:ENST00000671972.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	36	2	2.46135	2.602535	2.74372	0.0374637	0.0153007	0.140008	0.108569
chr3	51579084	51579184	1426458	0	+	0.46	(0.44,0.476]	chr3	150471	371	INTRON	INTRON	RAD54L2	ENSG00000164080.14	ENST00000684192.1:ENST00000409535.6:ENST00000487093.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	36	2	2.46135	2.602535	2.74372	0.0374637	0.0153007	0.140008	0.108569
chr9	100186134	100186234	4177607	0	+	0.45	(0.44,0.476]	chr9	380840	538	INTRON	INTRON	INVS	ENSG00000119509.13	ENST00000262457.7:ENST00000496467.5:ENST00000262456.6:ENST00000466647.5:ENST00000460636.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	36	2	2.46135	2.602535	2.74372	0.0374637	0.0153007	0.140008	0.108569
chr6	34886343	34886440	3086321	0	-	0.371134	(0.35,0.378]	chr6	288722	12	INTRON	INTRON	TAF11	ENSG00000064995.19	ENST00000361288.9:ENST00000650109.1:ENST00000693593.1:ENST00000420584.3:ENST00000689560.1:ENST00000685682.1:ENST00000686190.1:ENST00000687970.1:ENST00000688059.1:ENST00000690161.1:ENST00000693481.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	86	2	2.32061	2.60253	2.88445	0.00545884	0.00212567	0.0669938	0.041756
chr6	13661429	13661529	3058721	0	-	0.3	(0.28,0.32]	chr6	284542	22	INTRON	INTRON	RANBP9	ENSG00000010017.13	ENST00000011619.6	protein_coding	protein_coding	protein_coding	protein_coding	5	84	2	1.90241	2.60252	3.30263	0.0157236	0.0038504	0.109464	0.0542786
chr4	169691813	169691913	2080597	0	+	0.32	(0.28,0.32]	chr4	205645	3	SS3_PROX	SS3_PROX:INTRON	CLCN3	ENSG00000109572.15	ENST00000347613.8:ENST00000360642.7:ENST00000513761.6:ENST00000613795.4:ENST00000507875.5	protein_coding	protein_coding	protein_coding	protein_coding	3	62	2	2.08149	2.602405	3.12332	0.031124	0.00698537	0.143644	0.0718189
chr7	12336811	12336887	3484733	0	-	0.263158	[0,0.28]	chr7	325815	2	SS5_PROX	SS5_PROX:INTRON	VWDE	ENSG00000146530.15	ENST00000275358.8:ENST00000452576.6:ENST00000521169.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	223	2	2.2868	2.6022350000000003	2.91767	0.0016699	5.06801e-4	0.0379061	0.020816
chr19	16839383	16839482	7027467	0	+	0.585859	(0.57,1]	chr19	699470	74	INTRON	INTRON	SIN3B	ENSG00000127511.10	ENST00000248054.10:ENST00000379803.5:ENST00000596802.5	protein_coding	protein_coding	protein_coding	protein_coding	8	59	2	1.56203	2.6021650000000003	3.6423	0.0238371	1.26117e-5	0.129075	0.00281675
chr2	27350732	27350832	1086818	0	-	0.49	(0.476,0.515]	chr2	116361	1	SS3_PROX	SS3_PROX:INTRON	GTF3C2	ENSG00000115207.15	ENST00000359541.6:ENST00000264720.8:ENST00000457748.1:ENST00000423998.1	protein_coding	protein_coding	protein_coding	protein_coding	6	91	2	1.95469	2.602145	3.2496	0.0115753	3.39435e-4	0.0962115	0.0170719
chr20	38005767	38005839	7341045	0	-	0.166667	[0,0.28]	chr20	748176	2	SS5_PROX	SS5_PROX:INTRON	TTI1	ENSG00000101407.13	ENST00000373448.6:ENST00000373447.8:ENST00000449821.1	protein_coding	protein_coding	protein_coding	protein_coding	3	70	2	1.94204	2.6020700000000003	3.2621000000000002	0.0544139	0.00367113	0.164972	0.056059199999999997
chr2	222874139	222874239	1021341	0	+	0.51	(0.476,0.515]	chr2	109244	82	INTRON	INTRON	ACSL3	ENSG00000123983.15	ENST00000392066.7:ENST00000407441.5:ENST00000680251.1:ENST00000679541.1:ENST00000681906.1:ENST00000679545.1:ENST00000679932.1:ENST00000680100.1:ENST00000680475.1:ENST00000680525.1:ENST00000680420.1:ENST00000681326.1:ENST00000681292.1:ENST00000681017.1:ENST00000680382.1:ENST00000535678.2:ENST00000680395.1:ENST00000680736.1:ENST00000679546.1:ENST00000680147.1:ENST00000357430.8:ENST00000681009.1:ENST00000679514.1:ENST00000681697.1:ENST00000680921.1:ENST00000681383.1:ENST00000413316.1:ENST00000679558.1:ENST00000680684.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	48	2	2.37731	2.60202	2.82673	0.0134403	0.0111793	0.0946278	0.0937192
chr6	57107835	57107934	2878236	0	+	0.494949	(0.476,0.515]	chr6	273248	59	UTR3	UTR3:EXON_MRNA:INTRON	ZNF451	ENSG00000112200.17	ENST00000515290.5:ENST00000510483.5:ENST00000357489.7:ENST00000370708.8:ENST00000370702.5:ENST00000444273.6:ENST00000370711.9:ENST00000370706.9:ENST00000491832.6:ENST00000502749.1:ENST00000504603.1:ENST00000509071.5:ENST00000509251.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	151	2	2.56354	2.601985	2.64043	5.19158e-4	2.41299e-4	0.0209322	0.0136685
chr11	14505841	14505935	4918347	0	-	0.510638	(0.476,0.515]	chr11	460981	2	INTRON	INTRON	PSMA1	ENSG00000129084.18	ENST00000524606.1:ENST00000396394.7:ENST00000530457.5:ENST00000528307.5:ENST00000418988.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	48	2	2.26034	2.60192	2.9435	0.0166235	0.00929849	0.110511	0.0817766
chr9	131403444	131403544	4217063	0	+	0.48	(0.476,0.515]	chr9	386720	88	INTRON	INTRON	PRRC2B	ENSG00000288701.1	ENST00000682525.1:ENST00000684596.1:ENST00000683519.1:ENST00000682501.1	protein_coding	protein_coding	protein_coding	protein_coding	3	48	2	2.26034	2.60192	2.9435	0.0166235	0.00929849	0.110511	0.0817766
chr11	46557745	46557845	4946897	0	-	0.54	(0.515,0.57]	chr11	463525	83	INTRON	INTRON	AMBRA1	ENSG00000110497.15	ENST00000683756.1:ENST00000534300.5:ENST00000533727.5:ENST00000314845.7:ENST00000458649.6:ENST00000528950.1:ENST00000531542.1:ENST00000526606.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	46	2	2.23915	2.60191	2.96467	0.0596178	8.94279e-4	0.16883600000000001	0.0273458
chr4	77813475	77813575	2166977	0	-	0.27	[0,0.28]	chr4	213719	367	INTRON	INTRON	CNOT6L	ENSG00000138767.14	ENST00000504123.7:ENST00000649644.1:ENST00000515506.6:ENST00000512485.6:ENST00000504804.7:ENST00000506166.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	70	2	2.56073	2.60191	2.64309	0.0308646	0.00743095	0.13151	0.0772645
chr18	9927662	9927761	6873480	0	+	0.323232	(0.32,0.35]	chr18	680874	23	INTRON	INTRON	VAPA	ENSG00000101558.14	ENST00000400000.7:ENST00000577901.5:ENST00000340541.4:ENST00000585042.5:ENST00000584796.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	115	2	1.50797	2.601895	3.69582	0.0173844	7.3931e-4	0.112484	0.0249744
chr12	124913869	124913968	5446803	0	-	0.454545	(0.44,0.476]	chr12	521316	2	UTR5	UTR5:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	UBC	ENSG00000150991.16	ENST00000536769.1:ENST00000538617.5:ENST00000339647.6:ENST00000541272.1:ENST00000540351.1:ENST00000541645.1:ENST00000535131.1:ENST00000544481.1:ENST00000546271.1:ENST00000540700.1:ENST00000535859.1:ENST00000542416.1:ENST00000536661.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	89	2	2.25992	2.601825	2.94373	0.00324123	0.00143431	0.0524329	0.0340925
chr10	45869202	45869302	4607623	0	-	0.39	(0.378,0.408]	chr10	424444	57	INTRON	INTRON	PARGP1	ENSG00000239883.9	ENST00000440803.7:ENST00000688192.1:ENST00000686367.1:ENST00000693310.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	5	69	2	1.80483	2.601775	3.39872	0.0201276	0.0019852	0.121243	0.0404516
chr16	2517711	2517807	6278697	0	+	0.46875	(0.44,0.476]	chr16	600552	12	EXON_MRNA	EXON_MRNA:INTRON	ATP6V0C:ENSG00000279520	ENSG00000185883.12:ENSG00000279520.1	ENST00000330398.9:ENST00000568562.1:ENST00000565223.1:ENST00000624099.1	protein_coding	protein_coding	protein_coding:TEC	protein_coding:TEC	4	58	2	1.98146	2.60169	3.22192	0.0186013	0.00360821	0.117264	0.0533855
chr19	46787038	46787138	7195410	0	-	0.62	(0.57,1]	chr19	729005	4	SS5_PROX	SS5_PROX:INTRON	SLC1A5	ENSG00000105281.12	ENST00000542575.6:ENST00000412532.6	protein_coding	protein_coding	protein_coding	protein_coding	5	36	2	1.64415	2.601675	3.5592	0.0342575	4.21089e-4	0.135558	0.0183576
chr1	179871162	179871260	593402	0	-	0.367347	(0.35,0.378]	chr1	71116	16	INTRON	INTRON	TOR1AIP2	ENSG00000169905.13	ENST00000367612.7:ENST00000609928.6:ENST00000482587.5:ENST00000495650.1:ENST00000474318.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	73	2	2.11889	2.6016	3.08431	0.0065853	0.00625927	0.0720609	0.0701901
chr10	97754278	97754377	4505471	0	+	0.444444	(0.44,0.476]	chr10	414823	7	INTRON	INTRON	ZFYVE27	ENSG00000155256.18	ENST00000337540.11:ENST00000370613.7:ENST00000370610.7:ENST00000357540.8:ENST00000393677.8:ENST00000423811.3:ENST00000684270.1:ENST00000359980.5	protein_coding	protein_coding	protein_coding	protein_coding	4	65	2	2.55649	2.60159	2.64669	0.00670547	0.0040295	0.0707084	0.0578376
chr12	111435127	111435227	5227881	0	+	0.55	(0.515,0.57]	chr12	495499	1	SS5_PROX	SS5_PROX:INTRON	SH2B3	ENSG00000111252.11	ENST00000341259.7:ENST00000550925.2:ENST00000538307.1	protein_coding	protein_coding	protein_coding	protein_coding	3	42	2	2.11313	2.601575	3.09002	0.0256725	0.00491099	0.133676	0.0609494
chr3	184318606	184318703	1582325	0	+	0.515464	(0.515,0.57]	chr3	163584	4	INTRON	INTRON	EIF4G1	ENSG00000114867.22	ENST00000352767.7:ENST00000414031.5:ENST00000392537.6:ENST00000444134.5:ENST00000442406.5:ENST00000450424.5:ENST00000421110.5:ENST00000435046.7:ENST00000382330.7:ENST00000413967.5:ENST00000426123.5:ENST00000346169.7:ENST00000350481.9:ENST00000440448.5:ENST00000427141.6:ENST00000427845.5:ENST00000342981.8:ENST00000424196.5:ENST00000456033.5:ENST00000411531.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	42	2	2.11313	2.601575	3.09002	0.0256725	0.00491099	0.133676	0.0609494
chr5	139580185	139580285	2500692	0	+	0.47	(0.44,0.476]	chr5	239026	174	INTRON	INTRON	UBE2D2	ENSG00000131508.16	ENST00000511725.5:ENST00000505007.5:ENST00000398733.8:ENST00000510470.1:ENST00000398734.8:ENST00000505548.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	119	2	2.36073	2.601565	2.8424	0.00108744	6.35745e-4	0.0301337	0.0231636
chr3	49359818	49359916	1693528	0	-	0.397959	(0.378,0.408]	chr3	173668	8	UTR3	UTR3:EXON_MRNA	RHOA	ENSG00000067560.14	ENST00000678200.1:ENST00000422781.6:ENST00000676712.2:ENST00000678921.2:ENST00000445425.6:ENST00000454011.7:ENST00000418115.6:ENST00000679208.1	protein_coding	protein_coding	protein_coding	protein_coding	14	122	2	1.04812	2.6014749999999998	4.15483	0.0588205	6.54278e-5	0.189982	0.00715707
chr19	34456029	34456126	7053407	0	+	0.42268	(0.408,0.44]	chr19	703551	11	INTRON	INTRON	UBA2	ENSG00000126261.13	ENST00000586313.1:ENST00000246548.9:ENST00000439527.6:ENST00000591016.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	101	2	2.41161	2.601425	2.79124	0.00276922	8.34334e-4	0.0469265	0.0263691
chr17	42520426	42520526	6611940	0	+	0.41	(0.408,0.44]	chr17	644201	26	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:INTRON	ATP6V0A1	ENSG00000033627.17	ENST00000393829.6:ENST00000343619.9:ENST00000537728.5:ENST00000264649.10:ENST00000585525.5:ENST00000544137.5:ENST00000586201.5:ENST00000588138.1:ENST00000585828.5:ENST00000588806.1:ENST00000592831.1:ENST00000587797.1:ENST00000587299.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	95	2	2.59487	2.6013599999999997	2.60785	0.00202403	0.00146754	0.04086	0.035104
chr1	111170252	111170351	184032	0	+	0.333333	(0.32,0.35]	chr1	20432	86	INTRON	INTRON	CEPT1	ENSG00000134255.15	ENST00000545121.5:ENST00000498239.5:ENST00000357172.9:ENST00000460443.5:ENST00000478042.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	92	2	1.99785	2.60132	3.20479	0.0215554	3.7902e-4	0.114686	0.0176313
chr6	132772031	132772131	3222549	0	-	0.4	(0.378,0.408]	chr6	299589	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	SLC18B1	ENSG00000146409.12	ENST00000275227.9:ENST00000647932.1:ENST00000650278.1:ENST00000650136.1:ENST00000650298.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	99	2	2.17296	2.601225	3.02949	0.0110512	1.73068e-4	0.0873897	0.0114086
chr13	95096179	95096279	5637801	0	-	0.34	(0.32,0.35]	chr13	537048	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	ABCC4	ENSG00000125257.16	ENST00000645237.2:ENST00000643051.1:ENST00000643842.1:ENST00000646439.1:ENST00000644880.1:ENST00000643816.1:ENST00000536256.3:ENST00000643556.1:ENST00000629385.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	56	2	2.4053	2.601185	2.79707	0.0170923	0.0108284	0.104099	0.0920575
chr15	27124788	27124888	5983691	0	+	0.41	(0.408,0.44]	chr15	569164	976	INTRON	INTRON	GABRG3	ENSG00000182256.13	ENST00000615808.5:ENST00000555083.5	protein_coding	protein_coding	protein_coding	protein_coding	7	101	2	1.9279	2.601165	3.27443	0.00807087	3.21517e-4	0.0806514	0.0165575
chr16	226541	226641	6426161	0	-	0.35	(0.32,0.35]	chr16	617444	54	INTRON	INTRON	LUC7L	ENSG00000007392.17	ENST00000337351.8:ENST00000426094.5:ENST00000397783.5:ENST00000629543.2:ENST00000490762.5:ENST00000293872.13:ENST00000419516.5:ENST00000397780.5:ENST00000418978.5:ENST00000430864.5:ENST00000443357.5:ENST00000494366.5:ENST00000469109.1:ENST00000428363.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	57	2	2.57263	2.601165	2.6297	0.0312297	0.00476699	0.13151	0.0636201
chr11	108193656	108193756	5034895	0	-	0.44	(0.408,0.44]	chr11	474450	3	SS5_PROX	SS5_PROX:INTRON	NPAT	ENSG00000149308.17	ENST00000278612.9:ENST00000610253.5:ENST00000531384.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	49	2	1.94273	2.601105	3.25948	0.0456237	0.00246454	0.149888	0.0459102
chr17	46200391	46200491	6784948	0	-	0.43	(0.408,0.44]	chr17	669254	66	INTRON	INTRON	KANSL1	ENSG00000120071.15	ENST00000574590.6:ENST00000572904.6:ENST00000575318.6:ENST00000648792.1:ENST00000639150.1:ENST00000639375.1:ENST00000638269.1:ENST00000639356.1:ENST00000574655.6:ENST00000639099.1:ENST00000638902.1:ENST00000576739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	49	2	1.94273	2.601105	3.25948	0.0456237	0.00246454	0.149888	0.0459102
chr2	27583475	27583526	717936	0	+	0.431373	(0.408,0.44]	chr2	83347	2	UTR5	UTR5:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ZNF512	ENSG00000243943.10	ENST00000413371.6:ENST00000416005.6:ENST00000556601.5:ENST00000379717.5:ENST00000355467.6:ENST00000494548.1:ENST00000461705.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	49	2	1.94273	2.601105	3.25948	0.0456237	0.00246454	0.149888	0.0459102
chr7	151514702	151514802	3674874	0	-	0.41	(0.408,0.44]	chr7	341207	162	INTRON	INTRON	RHEB	ENSG00000106615.10	ENST00000262187.10:ENST00000472642.5:ENST00000478470.5:ENST00000496004.5:ENST00000470370.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	49	2	1.94273	2.601105	3.25948	0.0456237	0.00246454	0.149888	0.0459102
chr2	148732323	148732423	892631	0	+	0.35	(0.32,0.35]	chr2	98796	396	INTRON	INTRON	EPC2	ENSG00000135999.12	ENST00000457184.5:ENST00000258484.11:ENST00000397424.2	protein_coding	protein_coding	protein_coding	protein_coding	3	56	2	2.30476	2.601095	2.89743	0.0151817	0.0127608	0.108535	0.0926667
chr19	10668927	10669026	7013359	0	+	0.444444	(0.44,0.476]	chr19	696763	19	INTRON	INTRON	ILF3	ENSG00000129351.17	ENST00000449870.5:ENST00000587928.5:ENST00000407004.7:ENST00000589998.5:ENST00000589600.5:ENST00000589283.5:ENST00000590009.5:ENST00000593199.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	74	2	1.892	2.6010549999999997	3.31011	0.00935701	0.00259023	0.0858596	0.0452934
chr4	119440856	119440955	2230566	0	-	0.484848	(0.476,0.515]	chr4	218509	4	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GTF2IP12	ENSG00000283050.3	ENST00000634317.1:ENST00000456547.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	14	208	2	2.51169	2.60103	2.69037	2.65903e-4	5.71574e-5	0.0149989	0.00617842
chr21	34874861	34874961	7447133	0	-	0.41	(0.408,0.44]	chr21	759849	149	INTRON	INTRON	RUNX1	ENSG00000159216.19	ENST00000300305.7:ENST00000675419.1:ENST00000437180.5:ENST00000344691.8:ENST00000482318.5:ENST00000399240.5:ENST00000358356.9:ENST00000399237.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	59	2	1.78881	2.60102	3.41323	0.0370259	0.00129989	0.139194	0.0333764
chr1	12606383	12606482	379428	0	-	0.363636	(0.35,0.378]	chr1	44547	102	INTRON	INTRON	DHRS3	ENSG00000162496.9	ENST00000616661.5:ENST00000464917.5:ENST00000482265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	53	2	2.09331	2.60097	3.10863	0.0315717	0.00470896	0.13151	0.0631419
chr5	43476855	43476952	2614768	0	-	0.360825	(0.35,0.378]	chr5	248558	2	INTRON	INTRON	TMEM267	ENSG00000151881.15	ENST00000397080.8:ENST00000500337.6:ENST00000512085.5:ENST00000511525.1:ENST00000510130.1:ENST00000506860.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	53	2	2.09331	2.60097	3.10863	0.0315717	0.00470896	0.13151	0.0631419
chr16	11691784	11691883	6444679	0	-	0.575758	(0.57,1]	chr16	620787	6	CDS	CDS:EXON_MRNA	TXNDC11	ENSG00000153066.13	ENST00000283033.10:ENST00000356957.7:ENST00000572732.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	20	2	2.53383	2.6009200000000003	2.66801	0.02547	0.0169968	0.12011	0.110899
chr2	75935771	75935871	817517	0	+	0.59	(0.57,1]	chr2	91391	629	INTRON	INTRON	ENSG00000287474	ENSG00000287474.1	ENST00000670606.1	lncRNA	lncRNA	lncRNA	lncRNA	2	20	2	2.53383	2.6009200000000003	2.66801	0.02547	0.0169968	0.12011	0.110899
chr4	2559836	2559936	1912748	0	+	0.62	(0.57,1]	chr4	191976	223	INTRON	INTRON	RNF4:FAM193A	ENSG00000063978.16:ENSG00000125386.16	ENST00000508235.1:ENST00000637812.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	20	2	2.53383	2.6009200000000003	2.66801	0.02547	0.0169968	0.12011	0.110899
chr7	45106964	45107064	3528910	0	-	0.6	(0.57,1]	chr7	329180	13	EXON_MRNA	EXON_MRNA:INTRON	TBRG4	ENSG00000136270.14	ENST00000395655.8:ENST00000361278.7:ENST00000258770.8:ENST00000494076.5:ENST00000495973.5:ENST00000478532.5:ENST00000461363.1:ENST00000477328.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	20	2	2.53383	2.6009200000000003	2.66801	0.02547	0.0169968	0.12011	0.110899
chr11	86049781	86049880	5014650	0	-	0.333333	(0.32,0.35]	chr11	473022	178	INTRON	INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000630913.2:ENST00000528398.5:ENST00000356360.9:ENST00000534412.5:ENST00000531558.1:ENST00000531930.5:ENST00000532041.5:ENST00000525162.5:ENST00000528256.1:ENST00000528411.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	13	231	2	2.3585	2.60091	2.84332	0.00198682	2.00925e-5	0.0404678	0.00347294
chr16	70667234	70667334	6511998	0	-	0.31	(0.28,0.32]	chr16	630830	13	INTRON	INTRON	MTSS2	ENSG00000132613.16	ENST00000338779.11	protein_coding	protein_coding	protein_coding	protein_coding	5	84	2	1.83325	2.6009	3.36855	0.0199548	0.00305882	0.120668	0.0494118
chr16	29456545	29456644	6335118	0	+	0.525253	(0.515,0.57]	chr16	606765	2	EXON_MRNA	EXON_MRNA:INTRON	SLX1B:SLX1B-SULT1A4	ENSG00000181625.17:ENSG00000260280.5	ENST00000330181.9:ENST00000565219.1:ENST00000351581.4:ENST00000344620.10:ENST00000564950.5:ENST00000395400.4	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron	6	81	2	2.5204	2.60086	2.68132	0.00324198	9.8022e-4	0.0524329	0.0285591
chr1	243156955	243157053	667716	0	-	0.346939	(0.32,0.35]	chr1	79242	1	INTRON	INTRON	CEP170	ENSG00000143702.16	ENST00000366544.5:ENST00000366543.5:ENST00000366542.6:ENST00000336415.8:ENST00000490813.5:ENST00000413359.6:ENST00000464936.5:ENST00000492145.1	protein_coding	protein_coding	protein_coding	protein_coding	3	57	2	2.07985	2.6006549999999997	3.12146	0.0303092	0.00630799	0.143025	0.0687526
chr5	178207817	178207909	2559439	0	+	0.532609	(0.515,0.57]	chr5	244646	2	INTRON	INTRON	HNRNPAB	ENSG00000197451.12	ENST00000358344.8:ENST00000506339.5:ENST00000355836.9:ENST00000514633.5:ENST00000515193.5:ENST00000506259.5:ENST00000504898.5	protein_coding	protein_coding	protein_coding	protein_coding	12	152	2	2.43974	2.600615	2.7614899999999998	6.09302e-4	1.3808e-4	0.0223951	0.0107072
chr1	212869553	212869653	309953	0	+	0.56	(0.515,0.57]	chr1	35795	1	SS3_PROX	SS3_PROX:INTRON	FLVCR1	ENSG00000162769.13	ENST00000366971.9:ENST00000419102.1:ENST00000579295.1:ENST00000474693.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	57	2	1.84511	2.6006	3.35609	0.0167182	0.00174131	0.110511	0.0375363
chr1	147158573	147158672	542220	0	-	0.373737	(0.35,0.378]	chr1	63573	36	UTR3	UTR3:EXON_MRNA	PRKAB2	ENSG00000131791.8	ENST00000254101.4	protein_coding	protein_coding	protein_coding	protein_coding	3	55	2	2.39939	2.60059	2.80179	0.0458078	0.00223906	0.149888	0.0435144
chr15	55229605	55229703	6180295	0	-	0.428571	(0.408,0.44]	chr15	589124	5	INTRON	INTRON	RAB27A	ENSG00000069974.16	ENST00000336787.6:ENST00000396307.6:ENST00000564609.5:ENST00000569493.5:ENST00000566877.5:ENST00000567380.5:ENST00000565972.5:ENST00000563262.5	protein_coding	protein_coding	protein_coding	protein_coding	4	66	2	2.21857	2.600585	2.9826	0.0209591	9.23082e-4	0.112046	0.0278392
chr11	14336200	14336300	4917442	0	-	0.47	(0.44,0.476]	chr11	460800	275	INTRON	INTRON	RRAS2	ENSG00000133818.14	ENST00000256196.9:ENST00000537760.5:ENST00000529237.5:ENST00000534746.5:ENST00000526063.5:ENST00000532814.5:ENST00000531807.5:ENST00000532950.5:ENST00000531421.5:ENST00000526717.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	36	2	2.38219	2.600575	2.81896	0.045456	0.0120766	0.149888	0.0962311
chr12	101401329	101401407	5398026	0	-	0.461538	(0.44,0.476]	chr12	514831	3	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	ARL1	ENSG00000120805.14	ENST00000261636.13:ENST00000539055.5:ENST00000536227.5:ENST00000551688.1:ENST00000550597.1:ENST00000551828.5:ENST00000551671.5:ENST00000551092.5:ENST00000549283.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	36	2	2.38219	2.600575	2.81896	0.045456	0.0120766	0.149888	0.0962311
chr15	50447504	50447604	6022451	0	+	0.45	(0.44,0.476]	chr15	573954	30	INTRON	INTRON	USP8	ENSG00000138592.14	ENST00000560297.5:ENST00000396444.7:ENST00000560954.5:ENST00000425032.7:ENST00000307179.9:ENST00000559329.5:ENST00000560885.5:ENST00000560730.5:ENST00000625664.2:ENST00000561211.5:ENST00000558091.5:ENST00000559242.5:ENST00000561330.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:nonsense_mediated_decay:processed_transcript	2	36	2	2.38219	2.600575	2.81896	0.045456	0.0120766	0.149888	0.0962311
chr16	22529949	22530048	6322923	0	+	0.464646	(0.44,0.476]	chr16	605497	16	INTRON	INTRON	NPIPB5	ENSG00000243716.11	ENST00000415654.5:ENST00000415833.6:ENST00000424340.6:ENST00000521555.6:ENST00000517539.5:ENST00000541664.5:ENST00000528249.5:ENST00000543997.1:ENST00000539604.5:ENST00000621622.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	36	2	2.38219	2.600575	2.81896	0.045456	0.0120766	0.149888	0.0962311
chr17	29439466	29439566	6586127	0	+	0.46	(0.44,0.476]	chr17	640377	355	INTRON	INTRON	TAOK1	ENSG00000160551.12	ENST00000261716.8:ENST00000583121.5:ENST00000587277.1:ENST00000536202.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	36	2	2.38219	2.600575	2.81896	0.045456	0.0120766	0.149888	0.0962311
chr17	44721485	44721584	6615985	0	+	0.454545	(0.44,0.476]	chr17	645215	118	INTRON	INTRON	DBF4B	ENSG00000161692.18	ENST00000393547.6:ENST00000528353.5:ENST00000528766.5:ENST00000315005.8:ENST00000526924.5:ENST00000526915.5:ENST00000525140.5:ENST00000531699.5:ENST00000532789.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	36	2	2.38219	2.600575	2.81896	0.045456	0.0120766	0.149888	0.0962311
chr4	56452152	56452252	1962787	0	+	0.46	(0.44,0.476]	chr4	196906	1	SS5_PROX	SS5_PROX:INTRON	PAICS	ENSG00000128050.9	ENST00000514888.5:ENST00000264221.6:ENST00000505164.5:ENST00000399688.7:ENST00000512576.3	protein_coding	protein_coding	protein_coding	protein_coding	2	36	2	2.38219	2.600575	2.81896	0.045456	0.0120766	0.149888	0.0962311
chr9	33942547	33942640	4244762	0	-	0.473118	(0.44,0.476]	chr9	390392	3	INTRON	INTRON	UBAP2	ENSG00000137073.24	ENST00000379238.7:ENST00000683659.1:ENST00000682239.1:ENST00000683140.1:ENST00000682209.1:ENST00000681980.1:ENST00000360802.6:ENST00000683252.1:ENST00000684158.1:ENST00000682914.1:ENST00000683717.1:ENST00000379239.9:ENST00000683084.1:ENST00000684754.1:ENST00000629575.2:ENST00000379225.2:ENST00000684298.1:ENST00000412543.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	36	2	2.38219	2.600575	2.81896	0.045456	0.0120766	0.149888	0.0962311
chr1	224370882	224370982	321924	0	+	0.5	(0.476,0.515]	chr1	37076	2	SS3_PROX	SS3_PROX:INTRON	CNIH4	ENSG00000143771.12	ENST00000366858.7:ENST00000366857.9:ENST00000465271.6:ENST00000366860.9:ENST00000468318.5:ENST00000366856.3:ENST00000477413.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	36	2	2.3223	2.600545	2.87879	0.0519312	0.00999149	0.159306	0.0879541
chr10	125057331	125057430	4713302	0	-	0.494949	(0.476,0.515]	chr10	434897	178	INTRON	INTRON	CTBP2	ENSG00000175029.17	ENST00000337195.9:ENST00000411419.6:ENST00000494626.6:ENST00000531469.5:ENST00000460976.5:ENST00000476817.1:ENST00000530884.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	36	2	2.3223	2.600545	2.87879	0.0519312	0.00999149	0.159306	0.0879541
chr2	71124298	71124379	1154582	0	-	0.506173	(0.476,0.515]	chr2	123389	1	CDS	CDS:UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	MCEE	ENSG00000124370.11	ENST00000413592.5:ENST00000244217.6:ENST00000486135.1:ENST00000494660.6	protein_coding	protein_coding	protein_coding	protein_coding	2	36	2	2.3223	2.600545	2.87879	0.0519312	0.00999149	0.159306	0.0879541
chr22	21781567	21781667	7560519	0	-	0.48	(0.476,0.515]	chr22	773360	82	INTRON	INTRON	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	2	36	2	2.3223	2.600545	2.87879	0.0519312	0.00999149	0.159306	0.0879541
chr3	31582285	31582384	1391893	0	+	0.515152	(0.476,0.515]	chr3	145698	18	INTRON	INTRON	STT3B	ENSG00000163527.10	ENST00000453168.5:ENST00000295770.4:ENST00000423527.5:ENST00000462235.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	36	2	2.3223	2.600545	2.87879	0.0519312	0.00999149	0.159306	0.0879541
chr14	101833788	101833887	5819230	0	+	0.50505	(0.476,0.515]	chr14	551866	16	INTRON	INTRON	PPP2R5C	ENSG00000078304.20	ENST00000694906.1:ENST00000422945.6:ENST00000554442.5:ENST00000328724.9:ENST00000553890.1:ENST00000350249.7:ENST00000557621.5:ENST00000556946.1:ENST00000556307.5:ENST00000553730.5:ENST00000557714.1:ENST00000334743.9:ENST00000445439.7:ENST00000557095.5:ENST00000556493.1:ENST00000553842.1:ENST00000556373.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	95	2	2.17347	2.60051	3.02755	0.010447	1.7047e-4	0.0855102	0.0113543
chr7	75525304	75525404	3559123	0	-	0.52	(0.515,0.57]	chr7	331602	87	INTRON	INTRON	PMS2P3	ENSG00000127957.19	ENST00000693762.1:ENST00000394921.8:ENST00000430602.5:ENST00000418756.5:ENST00000437568.6:ENST00000533167.5:ENST00000691440.1:ENST00000422064.1:ENST00000438326.2	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript	4	50	2	2.17039	2.60038	3.03037	0.00900252	0.00608732	0.0851009	0.0676501
chr1	200582672	200582769	617346	0	-	0.474227	(0.44,0.476]	chr1	72992	10	INTRON	INTRON	KIF14	ENSG00000118193.12	ENST00000614960.4:ENST00000367350.5	protein_coding	protein_coding	protein_coding	protein_coding	2	36	2	2.5364	2.600365	2.66433	0.0309324	0.0194358	0.13151	0.119831
chr18	13097201	13097299	6877674	0	+	0.459184	(0.44,0.476]	chr18	681536	5	INTRON	INTRON	CEP192	ENSG00000101639.19	ENST00000325971.12:ENST00000506447.5:ENST00000513432.5:ENST00000511820.6:ENST00000510237.5:ENST00000589993.5:ENST00000540847.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	36	2	2.5364	2.600365	2.66433	0.0309324	0.0194358	0.13151	0.119831
chr2	176320799	176320899	925732	0	+	0.47	(0.44,0.476]	chr2	101688	161	INTRON	INTRON	MTX2	ENSG00000128654.14	ENST00000420864.5:ENST00000249442.11:ENST00000423461.6:ENST00000443241.5:ENST00000452865.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	36	2	2.5364	2.600365	2.66433	0.0309324	0.0194358	0.13151	0.119831
chr4	82898747	82898840	2180190	0	-	0.473118	(0.44,0.476]	chr4	214424	3	INTRON	INTRON	SEC31A:THAP9-AS1	ENSG00000138674.17:ENSG00000251022.6	ENST00000355196.6:ENST00000503210.5:ENST00000507676.5:ENST00000506495.5:ENST00000507051.1:ENST00000504520.6:ENST00000504792.6:ENST00000512932.5:ENST00000511271.5:ENST00000508772.5:ENST00000513581.5:ENST00000504718.5:ENST00000505028.5:ENST00000507660.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	7	110	2	2.22651	2.60035	2.97419	0.00376161	3.31666e-4	0.0562562	0.0168836
chr1	168244636	168244736	250351	0	+	0.55	(0.515,0.57]	chr1	29769	22	UTR3	UTR3:EXON_MRNA	SFT2D2	ENSG00000213064.10	ENST00000271375.7	protein_coding	protein_coding	protein_coding	protein_coding	2	33	2	2.23241	2.600275	2.96814	0.0581268	0.00756432	0.188651	0.0749063
chr10	73065753	73065852	4647530	0	-	0.313131	(0.28,0.32]	chr10	427530	118	INTRON	INTRON	P4HA1	ENSG00000122884.13	ENST00000394890.7:ENST00000307116.6:ENST00000373008.6:ENST00000440381.5:ENST00000263556.3	protein_coding	protein_coding	protein_coding	protein_coding	17	283	2	2.2399	2.600275	2.96065	3.01235e-4	2.7488e-4	0.0155054	0.0151875
chr12	50507638	50507738	5137176	0	+	0.52	(0.515,0.57]	chr12	484468	20	INTRON	INTRON	DIP2B	ENSG00000066084.13	ENST00000301180.10:ENST00000549620.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	33	2	2.23241	2.600275	2.96814	0.0581268	0.00756432	0.188651	0.0749063
chr12	45727278	45727377	5314867	0	-	0.454545	(0.44,0.476]	chr12	505540	94	EXON_LNCRNA	EXON_LNCRNA	ENSG00000273015	ENSG00000273015.2	ENST00000609803.2	lncRNA	lncRNA	lncRNA	lncRNA	5	78	2	2.14666	2.600195	3.05373	0.0116436	6.56725e-4	0.0889659	0.0232396
chr1	8794584	8794684	373554	0	-	0.49	(0.476,0.515]	chr1	43555	16	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000656437.1:ENST00000659924.1	protein_coding	protein_coding	protein_coding	protein_coding	2	36	2	2.56868	2.60018	2.63168	0.0256676	0.0237106	0.133676	0.118716
chr1	231560132	231560231	337922	0	+	0.494949	(0.476,0.515]	chr1	39328	56	INTRON	INTRON	TSNAX	ENSG00000116918.15	ENST00000413309.3:ENST00000366639.9:ENST00000475168.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	36	2	2.56868	2.60018	2.63168	0.0256676	0.0237106	0.133676	0.118716
chr17	82189608	82189707	6852212	0	-	0.50505	(0.476,0.515]	chr17	679044	8	INTRON	INTRON	CCDC57	ENSG00000176155.21	ENST00000694881.1:ENST00000389641.9:ENST00000694882.1:ENST00000665763.1:ENST00000578910.2:ENST00000392343.3:ENST00000578187.1:ENST00000581625.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	36	2	2.56868	2.60018	2.63168	0.0256676	0.0237106	0.133676	0.118716
chr7	17867407	17867507	3495818	0	-	0.49	(0.476,0.515]	chr7	326448	161	INTRON	INTRON	SNX13	ENSG00000071189.21	ENST00000428135.7:ENST00000611725.4:ENST00000409076.6:ENST00000444712.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	36	2	2.56868	2.60018	2.63168	0.0256676	0.0237106	0.133676	0.118716
chr8	38111627	38111726	3734733	0	+	0.484848	(0.476,0.515]	chr8	346969	4	INTRON	INTRON	ASH2L	ENSG00000129691.16	ENST00000545394.2:ENST00000343823.11:ENST00000517496.5:ENST00000428278.6:ENST00000521652.5:ENST00000524263.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	36	2	2.56868	2.60018	2.63168	0.0256676	0.0237106	0.133676	0.118716
chr11	68313704	68313804	4815946	0	+	0.62	(0.57,1]	chr11	448753	5	INTRON	INTRON	LRP5	ENSG00000162337.12	ENST00000294304.12:ENST00000529993.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	44	2	1.89351	2.6001700000000003	3.30683	0.0255126	1.13407e-4	0.133676	0.00957524
chr7	142948608	142948708	3664041	0	-	0.33	(0.32,0.35]	chr7	340189	16	INTRON	INTRON	KEL	ENSG00000197993.9	ENST00000355265.7:ENST00000479768.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	88	2	1.5852	2.600135	3.61507	0.0351213	6.48785e-4	0.137535	0.0230814
chr2	218579961	218580060	1018304	0	+	0.545455	(0.515,0.57]	chr2	108431	54	INTRON	INTRON	CNOT9	ENSG00000144580.14	ENST00000627282.2:ENST00000542068.5:ENST00000433439.1:ENST00000273064.11:ENST00000432877.5:ENST00000295701.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	42	2	1.9459	2.60001	3.25412	0.0429089	0.00224554	0.148082	0.0435144
chr7	128006736	128006836	3405973	0	+	0.53	(0.515,0.57]	chr7	318188	88	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000486037.1:ENST00000484767.5:ENST00000470723.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	42	2	1.9459	2.60001	3.25412	0.0429089	0.00224554	0.148082	0.0435144
chr8	37898870	37898970	3935939	0	-	0.69	(0.57,1]	chr8	360577	4	SS5_PROX	SS5_PROX:INTRON	RAB11FIP1	ENSG00000156675.16	ENST00000330843.9:ENST00000287263.8:ENST00000522727.5	protein_coding	protein_coding	protein_coding	protein_coding	5	43	2	2.33295	2.599955	2.86696	0.0122896	2.88184e-4	0.091087	0.0150627
chr6	42623451	42623551	2865665	0	+	0.55	(0.515,0.57]	chr6	271081	32	INTRON	INTRON	UBR2	ENSG00000024048.11	ENST00000372899.6:ENST00000372901.2	protein_coding	protein_coding	protein_coding	protein_coding	6	65	2	1.72014	2.599865	3.47959	0.0185015	8.38022e-4	0.108861	0.0263691
chr1	87015803	87015903	154607	0	+	0.38	(0.378,0.408]	chr1	16969	404	INTRON	INTRON	HS2ST1	ENSG00000153936.18	ENST00000370550.10:ENST00000370551.8:ENST00000687893.1:ENST00000693745.1:ENST00000689904.1:ENST00000690674.1:ENST00000591456.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	50	2	2.29798	2.5998	2.90162	0.0147606	0.0113157	0.106702	0.0886121
chr10	121960005	121960093	4709886	0	-	0.386364	(0.378,0.408]	chr10	434565	2	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NSMCE4A	ENSG00000107672.15	ENST00000369023.8:ENST00000489266.5:ENST00000468209.5:ENST00000483541.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	50	2	2.29798	2.5998	2.90162	0.0147606	0.0113157	0.106702	0.0886121
chr8	143584544	143584642	4083162	0	-	0.520408	(0.515,0.57]	chr8	370980	4	INTRON	INTRON	EEF1D	ENSG00000104529.19	ENST00000317198.10:ENST00000532400.1:ENST00000529272.5:ENST00000395119.7:ENST00000533833.5:ENST00000528610.5:ENST00000442189.6:ENST00000618139.4:ENST00000526838.5:ENST00000532741.5:ENST00000531621.5:ENST00000529007.5:ENST00000524624.5:ENST00000530191.6:ENST00000534377.6:ENST00000529516.6:ENST00000419152.7:ENST00000531218.6:ENST00000533494.6:ENST00000534380.6:ENST00000530445.6:ENST00000524397.5:ENST00000528382.1:ENST00000526786.5:ENST00000530616.5:ENST00000530848.5:ENST00000534232.5:ENST00000533749.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	90	2	2.36966	2.5998	2.82994	0.00168661	0.00109329	0.0381778	0.0304174
chr17	60603135	60603232	6644495	0	+	0.350515	(0.35,0.378]	chr17	648912	19	INTRON	INTRON	PPM1D	ENSG00000170836.13	ENST00000305921.8:ENST00000693102.1:ENST00000685212.1:ENST00000693196.1:ENST00000392995.7:ENST00000685582.1:ENST00000688505.1:ENST00000629650.3:ENST00000687355.1:ENST00000686064.1:ENST00000689445.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	63	2	2.07049	2.59977	3.12905	0.0140397	0.00566312	0.102801	0.0653997
chr7	10707712	10707812	3483857	0	-	0.37	(0.35,0.378]	chr7	325772	1458	INTRON	INTRON	MGC4859	ENSG00000283117.1	ENST00000634803.1	lncRNA	lncRNA	lncRNA	lncRNA	4	63	2	2.07049	2.59977	3.12905	0.0140397	0.00566312	0.102801	0.0653997
chr7	76554620	76554720	3340414	0	+	0.52	(0.515,0.57]	chr7	311170	27	INTRON	INTRON	ENSG00000205485	ENSG00000205485.13	ENST00000418663.5:ENST00000450661.1:ENST00000423084.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	4	51	2	1.7492	2.59967	3.45014	0.0382504	0.00116948	0.15832	0.0312127
chr6	122535869	122535969	2948310	0	+	0.34	(0.32,0.35]	chr6	277524	425	INTRON	INTRON	PKIB	ENSG00000135549.16	ENST00000615438.4:ENST00000392491.6:ENST00000608895.5:ENST00000618977.4:ENST00000583007.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	42	2	2.23182	2.59964	2.96746	0.068598	0.00815799	0.184298	0.0810802
chr1	8875507	8875597	374274	0	-	0.444444	(0.44,0.476]	chr1	43650	2	SS5_PROX	SS5_PROX:INTRON	ENO1	ENSG00000074800.16	ENST00000234590.10:ENST00000647408.1:ENST00000646370.2:ENST00000645609.1:ENST00000497492.1:ENST00000646660.1:ENST00000646680.1:ENST00000646906.1:ENST00000646156.1:ENST00000643438.1:ENST00000489867.2:ENST00000486051.5:ENST00000492343.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	166	2	2.46551	2.5995749999999997	2.73364	3.60069e-4	2.19749e-4	0.0169207	0.0135522
chr21	34108249	34108348	7401442	0	+	0.363636	(0.35,0.378]	chr21	753975	21	INTRON	INTRON	MRPS6	ENSG00000243927.6	ENST00000488492.5:ENST00000477091.5:ENST00000399312.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	141	2	2.2578	2.5995600000000003	2.94132	0.0016832	5.84286e-4	0.0370386	0.0219761
chr19	52654963	52655062	7206775	0	-	0.424242	(0.408,0.44]	chr19	731400	2	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	ZNF83:ENSG00000269825	ENSG00000167766.20:ENSG00000269825.2	ENST00000600714.5:ENST00000601257.5:ENST00000594682.6:ENST00000687234.1:ENST00000598536.5:ENST00000595171.5:ENST00000596440.5:ENST00000602232.5:ENST00000598322.2:ENST00000598190.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	59	2	1.83501	2.5993950000000003	3.36378	0.0323448	0.0016048	0.133003	0.0367961
chr1	44640875	44640973	92182	0	+	0.530612	(0.515,0.57]	chr1	12216	21	INTRON	INTRON	RNF220	ENSG00000187147.18	ENST00000355387.6:ENST00000361799.7:ENST00000372247.6:ENST00000440132.2:ENST00000335497.11:ENST00000474064.5:ENST00000471494.5:ENST00000497469.5:ENST00000475378.5:ENST00000484745.5:ENST00000474394.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	68	2	2.17039	2.59929	3.02819	0.00900252	7.81057e-4	0.0851009	0.0257168
chr2	111470387	111470487	1211558	0	-	0.43	(0.408,0.44]	chr2	128917	4	SS3_PROX	SS3_PROX:INTRON	MIR4435-2HG	ENSG00000172965.17	ENST00000645030.2:ENST00000642191.1:ENST00000673798.1:ENST00000645051.2:ENST00000673649.1:ENST00000669658.1:ENST00000669917.1:ENST00000661559.1:ENST00000653687.1:ENST00000667670.1:ENST00000609220.2:ENST00000656760.1:ENST00000609902.6:ENST00000666683.1:ENST00000674070.1:ENST00000662335.1:ENST00000664422.1:ENST00000673775.1:ENST00000674092.1:ENST00000673958.1:ENST00000658936.1:ENST00000662635.1:ENST00000666204.1:ENST00000659458.1:ENST00000664443.1:ENST00000670295.1:ENST00000661655.1:ENST00000666390.1:ENST00000659079.1:ENST00000660442.1:ENST00000664009.1:ENST00000439362.6:ENST00000654473.1:ENST00000664999.1:ENST00000673728.1:ENST00000659791.1:ENST00000666144.1:ENST00000659933.1:ENST00000670715.1:ENST00000653568.1:ENST00000643013.1:ENST00000673866.1:ENST00000443467.6:ENST00000669875.1:ENST00000673653.1:ENST00000673988.1:ENST00000661945.1:ENST00000669515.1:ENST00000431385.6:ENST00000656416.1:ENST00000674037.1:ENST00000432818.5:ENST00000674013.1:ENST00000444301.5:ENST00000673964.1:ENST00000673845.1:ENST00000673756.1:ENST00000673960.1:ENST00000673804.1:ENST00000673632.1:ENST00000453478.2:ENST00000673937.1:ENST00000673654.1:ENST00000409569.2:ENST00000674087.1:ENST00000419736.5:ENST00000673840.1:ENST00000674045.1:ENST00000673821.1:ENST00000643766.1:ENST00000308604.5:ENST00000604981.5:ENST00000673894.1:ENST00000442293.5:ENST00000441075.1:ENST00000673878.1:ENST00000439494.1	lncRNA	lncRNA	lncRNA	lncRNA	7	109	2	2.35743	2.599265	2.8411	0.00206746	6.58235e-4	0.0421756	0.0234118
chr20	35741697	35741768	7336560	0	-	0.676056	(0.57,1]	chr20	747516	2	SS5_PROX	SS5_PROX:INTRON	RBM39	ENSG00000131051.24	ENST00000253363.11:ENST00000639702.1:ENST00000656873.1:ENST00000463004.5:ENST00000361162.10:ENST00000403542.6:ENST00000338163.10:ENST00000528062.7:ENST00000429968.5:ENST00000444878.5:ENST00000665058.1:ENST00000374038.7:ENST00000412738.5:ENST00000455343.5:ENST00000442447.5:ENST00000433027.5:ENST00000453310.5:ENST00000416529.5:ENST00000397370.3:ENST00000463098.5:ENST00000461849.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	32	2	1.63919	2.599195	3.5592	0.05421	4.21089e-4	0.164887	0.0183576
chr20	50522683	50522783	7286037	0	+	0.33	(0.32,0.35]	chr20	741241	117	INTRON	INTRON	PTPN1	ENSG00000196396.10	ENST00000541713.5:ENST00000371621.5	protein_coding	protein_coding	protein_coding	protein_coding	2	42	2	2.56618	2.5991400000000002	2.6321	0.0274185	0.0268	0.136498	0.123349
chr8	119845416	119845514	4040191	0	-	0.326531	(0.32,0.35]	chr8	368442	13	INTRON	INTRON	DSCC1	ENSG00000136982.6	ENST00000313655.5	protein_coding	protein_coding	protein_coding	protein_coding	2	42	2	2.56618	2.5991400000000002	2.6321	0.0274185	0.0268	0.136498	0.123349
chr5	54062758	54062858	2618433	0	-	0.42	(0.408,0.44]	chr5	248837	146	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	137	2	2.57162	2.599125	2.62663	7.7144e-4	3.50541e-4	0.0255407	0.0166929
chrX	71379031	71379131	7678338	0	+	0.4	(0.378,0.408]	chrX	786158	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	TAF1	ENSG00000147133.17	ENST00000683202.1:ENST00000373790.9:ENST00000683352.1:ENST00000423759.6:ENST00000683782.1:ENST00000683715.1:ENST00000683668.1:ENST00000276072.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	13	188	2	2.19849	2.5991049999999998	2.99972	5.56944e-4	1.23884e-4	0.021494	0.010016
chr5	32149873	32149973	2597271	0	-	0.58	(0.57,1]	chr5	246744	56	INTRON	INTRON	GOLPH3	ENSG00000113384.14	ENST00000265070.7:ENST00000503610.5:ENST00000512668.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	49	2	2.58898	2.59907	2.60916	0.00134929	0.00119055	0.0338207	0.0315806
chr9	131428391	131428491	4217313	0	+	0.46	(0.44,0.476]	chr9	386720	338	INTRON	INTRON	PRRC2B	ENSG00000288701.1	ENST00000682525.1:ENST00000684596.1:ENST00000683519.1:ENST00000682501.1	protein_coding	protein_coding	protein_coding	protein_coding	6	94	2	2.59185	2.599025	2.6062	0.00200767	0.00148054	0.0408395	0.0353633
chr7	130132233	130132332	3414223	0	+	0.414141	(0.408,0.44]	chr7	319162	16	UTR3	UTR3:EXON_MRNA	KLHDC10	ENSG00000128607.14	ENST00000335420.10	protein_coding	protein_coding	protein_coding	protein_coding	5	79	2	2.49218	2.59902	2.70586	0.00855168	9.14702e-4	0.0780217	0.027804
chr1	65260915	65261014	135600	0	+	0.323232	(0.32,0.35]	chr1	15341	59	INTRON	INTRON	DNAJC6	ENSG00000116675.16	ENST00000463018.5:ENST00000494710.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	224	2	2.3388	2.59901	2.85922	4.23112e-4	1.82593e-4	0.0184109	0.0122582
chr15	58057811	58057911	6187463	0	-	0.33	(0.32,0.35]	chr15	589787	4	SS5_PROX	SS5_PROX:INTRON	ALDH1A2	ENSG00000128918.15	ENST00000537372.5:ENST00000249750.9:ENST00000347587.7:ENST00000430119.6:ENST00000558231.5:ENST00000558595.5:ENST00000558239.5:ENST00000557967.5:ENST00000558073.5:ENST00000559297.5:ENST00000560122.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	158	2	1.56853	2.59893	3.62933	0.0291621	6.22961e-6	0.128055	0.00175509
chr1	23342913	23343013	399583	0	-	0.23	[0,0.28]	chr1	47894	15	INTRON	INTRON	HNRNPR	ENSG00000125944.21	ENST00000478691.5:ENST00000302271.11:ENST00000374616.7:ENST00000374612.5:ENST00000675048.1:ENST00000606561.5:ENST00000476451.2:ENST00000490652.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	71	2	2.24053	2.59891	2.95729	0.0256186	0.0101824	0.120376	0.089002
chr16	84730970	84731070	6410213	0	+	0.45	(0.44,0.476]	chr16	615272	141	INTRON	INTRON	USP10	ENSG00000103194.16	ENST00000562743.5:ENST00000540269.6:ENST00000563892.5:ENST00000562092.1:ENST00000569511.5:ENST00000219473.12:ENST00000570191.5:ENST00000563048.5:ENST00000562283.5:ENST00000563386.5:ENST00000569038.5:ENST00000570053.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	10	150	2	1.94898	2.598825	3.24867	0.00609692	1.3104e-5	0.0676501	0.00268119
chr9	124723907	124724007	4348741	0	-	0.35	(0.32,0.35]	chr9	399255	1282	INTRON	INTRON	NR6A1	ENSG00000148200.17	ENST00000487099.7:ENST00000373584.7:ENST00000416460.6:ENST00000344523.8	protein_coding	protein_coding	protein_coding	protein_coding	8	140	2	2.08466	2.5988100000000003	3.11296	0.00617675	1.3514e-4	0.0677395	0.0100405
chr7	127713895	127713994	3403026	0	+	0.575758	(0.57,1]	chr7	318124	59	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8	protein_coding	protein_coding	protein_coding	protein_coding	4	32	2	2.16779	2.5987299999999998	3.02967	0.00900694	0.00471306	0.0803518	0.0631419
chr1	160330069	160330168	572184	0	-	0.535354	(0.515,0.57]	chr1	69355	40	INTRON	INTRON	COPA	ENSG00000122218.17	ENST00000241704.8:ENST00000696204.1:ENST00000696203.1:ENST00000649963.1:ENST00000696208.1:ENST00000696207.1:ENST00000649676.1:ENST00000368069.7:ENST00000647693.1:ENST00000649787.1:ENST00000650154.1:ENST00000647799.1:ENST00000648805.1:ENST00000647683.1:ENST00000649231.1:ENST00000648501.1:ENST00000696209.1:ENST00000696210.1:ENST00000696211.1:ENST00000647899.1:ENST00000696212.1:ENST00000696214.1:ENST00000696213.1:ENST00000696215.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	119	2	2.12249	2.5986849999999997	3.07488	0.00132558	1.38584e-4	0.0334725	0.0107072
chr14	21248150	21248250	5834953	0	-	0.37	(0.35,0.378]	chr14	554459	113	INTRON	INTRON	HNRNPC	ENSG00000092199.19	ENST00000336053.10:ENST00000553300.6:ENST00000554969.5:ENST00000556142.5:ENST00000554455.5:ENST00000430246.6:ENST00000553753.5:ENST00000555309.5:ENST00000555914.5:ENST00000557442.5:ENST00000556628.5:ENST00000556513.5:ENST00000555883.5:ENST00000557201.5:ENST00000556897.5:ENST00000420743.6:ENST00000554539.5:ENST00000554383.5:ENST00000555215.5:ENST00000555137.5:ENST00000554891.5:ENST00000556226.5:ENST00000555176.5:ENST00000553614.5:ENST00000557336.1:ENST00000557768.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	136	2	1.97779	2.598585	3.21938	0.00252327	4.98221e-4	0.0465056	0.0206993
chr21	34106856	34106956	7401428	0	+	0.38	(0.378,0.408]	chr21	753975	7	INTRON	INTRON	MRPS6	ENSG00000243927.6	ENST00000488492.5:ENST00000477091.5:ENST00000399312.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	167	2	2.53151	2.5985449999999997	2.66558	6.86788e-4	1.5918e-4	0.024008	0.0108521
chr12	123603717	123603814	5243169	0	+	0.350515	(0.35,0.378]	chr12	498293	11	INTRON	INTRON	DDX55	ENSG00000111364.16	ENST00000542286.5:ENST00000544429.5:ENST00000238146.9:ENST00000545042.1:ENST00000544738.5:ENST00000538744.5:ENST00000540763.5:ENST00000354291.8:ENST00000536079.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	87	2	2.20096	2.59849	2.99602	0.0087123	0.00133795	0.0844834	0.0335491
chr5	154762481	154762581	2527069	0	+	0.49	(0.476,0.515]	chr5	241610	46	INTRON	INTRON	LARP1	ENSG00000155506.19	ENST00000687700.1:ENST00000336314.9:ENST00000690816.1:ENST00000518297.6:ENST00000517616.5:ENST00000518892.1:ENST00000521577.1:ENST00000519931.5:ENST00000524248.5:ENST00000685946.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	49	2	1.79693	2.59848	3.40003	0.0649782	0.00139193	0.179417	0.0341261
chr18	2710108	2710207	6865430	0	+	0.383838	(0.378,0.408]	chr18	680035	18	INTRON	INTRON	SMCHD1	ENSG00000101596.17	ENST00000320876.11:ENST00000688342.1:ENST00000693213.1:ENST00000577880.5:ENST00000584897.5:ENST00000581711.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	69	2	2.04798	2.5984499999999997	3.14892	0.00809949	0.00499984	0.0808864	0.0617433
chr7	23470300	23470395	3503669	0	-	0.431579	(0.408,0.44]	chr7	326928	3	UTR5	UTR5:EXON_MRNA	IGF2BP3	ENSG00000136231.14	ENST00000258729.8:ENST00000421467.6:ENST00000468005.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	138	2	2.38647	2.59842	2.81037	0.00234575	8.65272e-5	0.0434875	0.00783027
chr1	6191052	6191150	366113	0	-	0.520408	(0.515,0.57]	chr1	43018	39	INTRON	INTRON	RPL22	ENSG00000116251.11	ENST00000234875.9:ENST00000480661.1:ENST00000497965.5:ENST00000471204.5:ENST00000465387.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	44	2	2.53845	2.598395	2.65834	0.0187418	0.00632226	0.117523	0.0687526
chr1	201963315	201963415	292420	0	+	0.52	(0.515,0.57]	chr1	33668	12	EXON_LNCRNA	EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TIMM17A	ENSG00000134375.11	ENST00000367287.5:ENST00000478378.5:ENST00000482943.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	44	2	2.53845	2.598395	2.65834	0.0187418	0.00632226	0.117523	0.0687526
chr3	36884848	36884948	1654665	0	-	0.53	(0.515,0.57]	chr3	169802	102	INTRON	INTRON	TRANK1	ENSG00000168016.15	ENST00000645898.2:ENST00000429976.5:ENST00000646897.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	44	2	2.53845	2.598395	2.65834	0.0187418	0.00632226	0.117523	0.0687526
chr1	100102354	100102454	515548	0	-	0.58	(0.57,1]	chr1	60434	138	INTRON	INTRON	SASS6	ENSG00000156876.10	ENST00000462159.1:ENST00000287482.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	56	2	2.49001	2.59834	2.70667	8.49418e-4	7.21202e-4	0.0267232	0.0245208
chr16	74331866	74331966	6523167	0	-	0.33	(0.32,0.35]	chr16	631552	186	INTRON	INTRON	ENSG00000259972	ENSG00000259972.3	ENST00000565313.1:ENST00000561921.1	lncRNA	lncRNA	lncRNA	lncRNA	6	111	2	2.56589	2.598335	2.63078	0.00218887	0.00204522	0.041908	0.0417893
chr18	36174936	36175035	6891907	0	+	0.50505	(0.476,0.515]	chr18	683093	4	UTR3	UTR3:EXON_MRNA	ELP2	ENSG00000134759.14	ENST00000358232.11:ENST00000540766.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	48	2	2.19809	2.598305	2.99852	0.020317	0.0077575	0.121522	0.0757402
chr9	87508001	87508101	4149913	0	+	0.51	(0.476,0.515]	chr9	378547	11	INTRON	INTRON	DAPK1	ENSG00000196730.13	ENST00000358077.9:ENST00000469640.6:ENST00000472284.5:ENST00000469067.5:ENST00000408954.8:ENST00000622514.4:ENST00000496522.5:ENST00000472344.1:ENST00000491893.5:ENST00000489291.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	48	2	2.19809	2.598305	2.99852	0.020317	0.0077575	0.121522	0.0757402
chr16	70545033	70545130	6385361	0	+	0.371134	(0.35,0.378]	chr16	613923	1	INTRON	INTRON	SF3B3	ENSG00000189091.13	ENST00000302516.10:ENST00000572365.1:ENST00000567635.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	71	2	2.28125	2.598205	2.91516	0.0182271	0.0013628	0.107842	0.0339121
chr5	40775603	40775703	2610939	0	-	0.39	(0.378,0.408]	chr5	248260	1	SS3_PROX	SS3_PROX:INTRON	PRKAA1	ENSG00000132356.12	ENST00000397128.7:ENST00000354209.7:ENST00000506652.5:ENST00000509874.5:ENST00000296800.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	83	2	2.18512	2.5981899999999998	3.01126	0.00902136	0.00115997	0.0851259	0.0311664
chr2	28920946	28921044	725447	0	+	0.367347	(0.35,0.378]	chr2	83818	26	INTRON	INTRON	WDR43	ENSG00000163811.12	ENST00000407426.8:ENST00000296126.6	protein_coding	protein_coding	protein_coding	protein_coding	2	39	2	2.39939	2.5979099999999997	2.79643	0.0458078	0.013543	0.149888	0.101363
chr2	69926260	69926360	805620	0	+	0.37	(0.35,0.378]	chr2	89920	41	INTRON	INTRON	MXD1	ENSG00000059728.11	ENST00000435990.5:ENST00000540449.5:ENST00000264444.7:ENST00000409442.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	39	2	2.39939	2.5979099999999997	2.79643	0.0458078	0.013543	0.149888	0.101363
chr6	33650793	33650892	2847574	0	+	0.363636	(0.35,0.378]	chr6	268791	99	INTRON	INTRON	ITPR3	ENSG00000096433.11	ENST00000374316.9:ENST00000605930.3	protein_coding	protein_coding	protein_coding	protein_coding	2	39	2	2.39939	2.5979099999999997	2.79643	0.0458078	0.013543	0.149888	0.101363
chr7	121387195	121387294	3630812	0	-	0.373737	(0.35,0.378]	chr7	337397	38	INTRON	INTRON	FAM3C	ENSG00000196937.11	ENST00000359943.8:ENST00000412653.5:ENST00000426156.1	protein_coding	protein_coding	protein_coding	protein_coding	2	39	2	2.39939	2.5979099999999997	2.79643	0.0458078	0.013543	0.149888	0.101363
chr21	37513724	37513824	7407716	0	+	0.23	[0,0.28]	chr21	754961	13	UTR3	UTR3:EXON_MRNA	DYRK1A	ENSG00000157540.22	ENST00000647188.2:ENST00000647504.1:ENST00000338785.8:ENST00000646548.1	protein_coding	protein_coding	protein_coding	protein_coding	7	159	2	2.39109	2.59785	2.80461	0.00424868	9.57163e-4	0.0573912	0.0284484
chr2	235554631	235554731	1041943	0	+	0.38	(0.378,0.408]	chr2	111222	297	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1:ENST00000402604.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	78	2	1.55037	2.59783	3.64529	0.0365151	4.71767e-4	0.138959	0.0196294
chr2	131109755	131109854	864440	0	+	0.373737	(0.35,0.378]	chr2	97119	13	INTRON	INTRON	PLEKHB2	ENSG00000115762.17	ENST00000403716.5:ENST00000439822.6:ENST00000409158.5:ENST00000234115.10:ENST00000628582.2:ENST00000482225.1:ENST00000693505.1:ENST00000438882.6:ENST00000404460.5:ENST00000409612.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	39	2	2.47065	2.5978149999999998	2.72498	0.0386172	0.0168499	0.142656	0.11068
chr6	167831225	167831325	3034380	0	+	0.37	(0.35,0.378]	chr6	282711	29	INTRON	INTRON	AFDN	ENSG00000130396.21	ENST00000683244.1:ENST00000400825.8:ENST00000351017.9:ENST00000344191.8:ENST00000392112.5:ENST00000392108.7:ENST00000400824.8:ENST00000400822.7:ENST00000447894.6:ENST00000366809.6:ENST00000366806.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	39	2	2.47065	2.5978149999999998	2.72498	0.0386172	0.0168499	0.142656	0.11068
chr9	135942489	135942589	4372371	0	-	0.45	(0.44,0.476]	chr9	402519	2	SS3_PROX	SS3_PROX:INTRON	UBAC1	ENSG00000130560.9	ENST00000371756.4:ENST00000489050.5:ENST00000465873.5:ENST00000471163.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	17	241	2	2.30032	2.5978149999999998	2.89531	1.73348e-4	4.89139e-5	0.0114154	0.00607345
chr12	98540354	98540453	5198875	0	+	0.353535	(0.35,0.378]	chr12	491821	24	INTRON	INTRON	TMPO	ENSG00000120802.14	ENST00000556029.6:ENST00000343315.9:ENST00000393053.6:ENST00000556678.1	protein_coding	protein_coding	protein_coding	protein_coding	6	82	2	1.57247	2.597595	3.62272	0.0350068	5.64719e-4	0.137535	0.021704
chr22	19056088	19056187	7551339	0	-	0.545455	(0.515,0.57]	chr22	771857	71	INTRON	INTRON	DGCR2	ENSG00000070413.20	ENST00000537045.5:ENST00000545799.5:ENST00000263196.12:ENST00000389262.8:ENST00000467659.1:ENST00000608548.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	75	2	1.7492	2.59756	3.44592	0.0382504	8.97344e-5	0.15832	0.00844245
chr16	16084240	16084339	6309121	0	+	0.464646	(0.44,0.476]	chr16	603608	3	INTRON	INTRON	ABCC1	ENSG00000103222.20	ENST00000678422.1:ENST00000677164.1:ENST00000399408.7:ENST00000572882.3:ENST00000399410.8:ENST00000575422.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	48	2	2.33272	2.597515	2.86231	0.0129984	0.012214	0.0991656	0.0910127
chr2	23863467	23863555	1080305	0	-	0.465909	(0.44,0.476]	chr2	115306	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ATAD2B	ENSG00000119778.15	ENST00000238789.10:ENST00000366438.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	48	2	2.33272	2.597515	2.86231	0.0129984	0.012214	0.0991656	0.0910127
chr5	79614377	79614475	2398744	0	+	0.469388	(0.44,0.476]	chr5	231675	4	INTRON	INTRON	TENT2	ENSG00000164329.14	ENST00000505571.5:ENST00000423041.6:ENST00000504233.5:ENST00000453514.6:ENST00000428308.6:ENST00000515807.5:ENST00000296783.7:ENST00000514095.5:ENST00000508620.5:ENST00000503620.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	48	2	2.33272	2.597515	2.86231	0.0129984	0.012214	0.0991656	0.0910127
chr5	138209738	138209837	2731687	0	-	0.464646	(0.44,0.476]	chr5	257262	27	INTRON	INTRON	CDC23	ENSG00000094880.11	ENST00000394886.7:ENST00000482948.5:ENST00000483961.6:ENST00000511383.5:ENST00000394884.7:ENST00000505120.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	48	2	2.33272	2.597515	2.86231	0.0129984	0.012214	0.0991656	0.0910127
chr5	179797678	179797760	2779900	0	-	0.463415	(0.44,0.476]	chr5	262344	2	UTR3	UTR3:EXON_MRNA	MGAT4B	ENSG00000161013.17	ENST00000337755.9:ENST00000518778.5:ENST00000292591.12:ENST00000519836.5:ENST00000520969.5	protein_coding	protein_coding	protein_coding	protein_coding	3	48	2	2.33272	2.597515	2.86231	0.0129984	0.012214	0.0991656	0.0910127
chr6	170362813	170362913	3036926	0	+	0.47	(0.44,0.476]	chr6	283078	41	INTRON	INTRON	FAM120B	ENSG00000112584.14	ENST00000630384.2:ENST00000537664.5:ENST00000476287.4:ENST00000625626.1	protein_coding	protein_coding	protein_coding	protein_coding	10	140	2	2.0432	2.59746	3.15172	0.00226364	1.3147e-4	0.0437013	0.010437
chr1	117867674	117867774	530464	0	-	0.31	(0.28,0.32]	chr1	62558	43	UTR3	UTR3:EXON_MRNA	GDAP2	ENSG00000196505.11	ENST00000369443.10	protein_coding	protein_coding	protein_coding	protein_coding	2	45	2	2.45545	2.5974500000000003	2.73945	0.0438092	0.017681	0.14901	0.11319
chr3	50059131	50059201	1424162	0	+	0.314286	(0.28,0.32]	chr3	150024	1	SS3_PROX	SS3_PROX:INTRON	RBM6	ENSG00000004534.15	ENST00000442092.5:ENST00000443081.5:ENST00000419610.5:ENST00000441115.5:ENST00000422955.5:ENST00000454079.5:ENST00000266022.9:ENST00000434592.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	45	2	2.45545	2.5974500000000003	2.73945	0.0438092	0.017681	0.14901	0.11319
chr11	130233011	130233110	5053036	0	-	0.272727	[0,0.28]	chr11	476930	65	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	ZBTB44	ENSG00000196323.14	ENST00000357899.9:ENST00000527478.6:ENST00000445008.6:ENST00000525842.5:ENST00000397753.5:ENST00000530205.5:ENST00000529982.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	70	2	2.09899	2.59743	3.09587	0.0371453	0.00651565	0.139304	0.0735232
chr2	197825016	197825116	969306	0	+	0.46	(0.44,0.476]	chr2	104858	143	INTRON	INTRON	PLCL1	ENSG00000115896.16	ENST00000428675.6:ENST00000435320.1:ENST00000487695.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	60	2	2.10892	2.597415	3.08591	0.0132897	0.00481262	0.0944742	0.0638089
chr1	15653080	15653178	33845	0	+	0.27551	[0,0.28]	chr1	4124	8	INTRON	INTRON	DDI2	ENSG00000197312.12	ENST00000480945.6:ENST00000320153.10:ENST00000548451.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	87	2	2.05547	2.597365	3.13926	0.0218514	0.00563224	0.11491	0.0678837
chr22	26553226	26553325	7564697	0	-	0.373737	(0.35,0.378]	chr22	774044	27	INTRON	INTRON	TPST2	ENSG00000128294.16	ENST00000338754.9:ENST00000403880.5:ENST00000398110.6:ENST00000442495.5:ENST00000440953.5:ENST00000453117.1:ENST00000450022.1	protein_coding	protein_coding	protein_coding	protein_coding	4	64	2	1.82281	2.59728	3.37175	0.0316938	0.00236696	0.144635	0.043778
chr2	241285982	241286082	1348272	0	-	0.37	(0.35,0.378]	chr2	141648	130	INTRON	INTRON	HDLBP	ENSG00000115677.18	ENST00000310931.10:ENST00000391976.6:ENST00000428482.5:ENST00000430918.5:ENST00000441124.5:ENST00000413241.5:ENST00000423693.5:ENST00000425989.5:ENST00000420451.5:ENST00000417540.5:ENST00000462130.1:ENST00000496569.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	53	2	1.87717	2.597265	3.31736	0.0555068	0.00211072	0.165463	0.0425419
chr8	53989052	53989150	3952964	0	-	0.387755	(0.378,0.408]	chr8	362539	4	INTRON	INTRON	TCEA1	ENSG00000187735.15	ENST00000396401.7:ENST00000521604.7:ENST00000521086.6:ENST00000522635.5:ENST00000522397.5:ENST00000640382.1:ENST00000640041.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	166	2	2.53753	2.59724	2.65695	0.00271682	4.74537e-5	0.0467523	0.00562068
chr10	68417453	68417551	4639206	0	-	0.510204	(0.476,0.515]	chr10	426640	2	INTRON	INTRON	DNA2	ENSG00000138346.15	ENST00000358410.8:ENST00000551118.6:ENST00000399179.6:ENST00000399180.3:ENST00000440722.2:ENST00000550545.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	51	2	2.54157	2.597125	2.65268	0.0201975	0.00697457	0.121243	0.0718189
chr7	140852310	140852410	3663009	0	-	0.49	(0.476,0.515]	chr7	340105	17	INTRON	INTRON	BRAF	ENSG00000157764.14	ENST00000496384.7:ENST00000644969.2:ENST00000646891.1:ENST00000644905.1:ENST00000642228.1:ENST00000288602.11:ENST00000646730.1:ENST00000497784.2:ENST00000642272.1:ENST00000642808.1:ENST00000643790.1:ENST00000469930.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	51	2	2.54157	2.597125	2.65268	0.0201975	0.00697457	0.121243	0.0718189
chr13	95232613	95232713	5639184	0	-	0.41	(0.408,0.44]	chr13	537151	215	INTRON	INTRON	ABCC4	ENSG00000125257.16	ENST00000645237.2:ENST00000643051.1:ENST00000643842.1:ENST00000646439.1:ENST00000643816.1:ENST00000536256.3:ENST00000643556.1:ENST00000629385.1:ENST00000642524.1:ENST00000645532.1:ENST00000644471.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	76	2	2.08773	2.59707	3.10641	0.00555646	0.00404379	0.0648867	0.0578376
chr11	118782378	118782477	5046282	0	-	0.292929	(0.28,0.32]	chr11	475799	8	INTRON	INTRON	DDX6	ENSG00000110367.14	ENST00000534980.7:ENST00000620157.4:ENST00000526070.2:ENST00000525082.1:ENST00000531971.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	61	2	2.51426	2.5970050000000002	2.67975	0.0252505	0.00781326	0.12011	0.0788246
chr5	44818534	44818634	2352098	0	+	0.29	(0.28,0.32]	chr5	226956	22	EXON_LNCRNA	EXON_LNCRNA	MRPS30	ENSG00000112996.11	ENST00000230914.4	protein_coding	processed_transcript	protein_coding	processed_transcript	3	61	2	2.51426	2.5970050000000002	2.67975	0.0252505	0.00781326	0.12011	0.0788246
chr11	86017137	86017236	5014316	0	-	0.50505	(0.476,0.515]	chr11	472995	18	INTRON	INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000630913.2:ENST00000528398.5:ENST00000356360.9:ENST00000534412.5:ENST00000531771.5:ENST00000531558.1:ENST00000531930.5:ENST00000532041.5:ENST00000525162.5:ENST00000528256.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	75	2	2.04194	2.59698	3.15202	0.00499341	0.00455841	0.0646039	0.0595107
chr4	118619302	118619400	2025022	0	+	0.530612	(0.515,0.57]	chr4	201337	8	INTRON	INTRON	ENSG00000260404	ENSG00000260404.4	ENST00000567913.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	5	67	2	2.364	2.59697	2.82994	0.00447856	0.00168661	0.0593175	0.0381778
chr7	105041921	105042021	3374901	0	+	0.33	(0.32,0.35]	chr7	315877	5	INTRON	INTRON	KMT2E	ENSG00000005483.22	ENST00000622386.2:ENST00000257745.9:ENST00000334884.9:ENST00000311117.8:ENST00000478990.5:ENST00000495267.5:ENST00000476671.5:ENST00000667857.1:ENST00000474203.5:ENST00000482560.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	26	421	2	2.43784	2.596915	2.75599	8.85155e-5	3.4653e-5	0.00842626	0.00469168
chr8	47791417	47791516	3943985	0	-	0.434343	(0.408,0.44]	chr8	361569	18	INTRON	INTRON	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7	protein_coding	protein_coding	protein_coding	protein_coding	2	38	2	2.2957	2.596825	2.89795	0.0516458	0.0110735	0.176696	0.0873897
chr7	132974124	132974224	3644805	0	-	0.3	(0.28,0.32]	chr7	338852	1	SS3_PROX	SS3_PROX:INTRON	CHCHD3	ENSG00000106554.13	ENST00000262570.10:ENST00000448878.6:ENST00000496427.5:ENST00000423635.5:ENST00000481152.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	61	2	2.1895	2.596725	3.00395	0.0227063	0.0101329	0.124921	0.0850389
chr1	21755462	21755559	396588	0	-	0.536082	(0.515,0.57]	chr1	47332	20	INTRON	INTRON	USP48	ENSG00000090686.16	ENST00000400301.5:ENST00000308271.14:ENST00000529637.5:ENST00000421625.6:ENST00000527823.5:ENST00000532737.1	protein_coding	protein_coding	protein_coding	protein_coding	25	302	2	2.52705	2.59672	2.66639	3.22814e-5	8.94282e-6	0.00478101	0.00215479
chr20	50906639	50906737	7355629	0	-	0.387755	(0.378,0.408]	chr20	750095	12	INTRON	INTRON	ADNP	ENSG00000101126.18	ENST00000621696.5:ENST00000673732.1:ENST00000396029.8:ENST00000644386.1:ENST00000396032.8:ENST00000349014.8:ENST00000645081.1:ENST00000642364.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	50	2	2.46345	2.5966899999999997	2.72993	0.0188736	0.00827342	0.108861	0.0813266
chr15	68779113	68779210	6214545	0	-	0.412371	(0.408,0.44]	chr15	592987	7	UTR3	UTR3:EXON_MRNA	ANP32A	ENSG00000140350.15	ENST00000465139.6:ENST00000409628.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	80	2	2.45395	2.59668	2.73941	0.00366321	0.002744	0.0535094	0.0484022
chr1	175944991	175945071	589066	0	-	0.325	(0.32,0.35]	chr1	70859	3	UTR3	UTR3:EXON_MRNA	COP1	ENSG00000143207.21	ENST00000367669.8:ENST00000367667.5:ENST00000461830.6:ENST00000367666.5:ENST00000649803.1:ENST00000482305.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	105	2	2.12121	2.5966199999999997	3.07203	0.00650424	0.00109373	0.0735144	0.0304174
chr1	244693315	244693415	348115	0	+	0.44	(0.408,0.44]	chr1	40375	9	INTRON	INTRON	DESI2	ENSG00000121644.19	ENST00000263831.11:ENST00000302550.16	protein_coding	protein_coding	protein_coding	protein_coding	3	49	2	1.88062	2.5965949999999998	3.31257	0.0534548	0.00198621	0.162935	0.0411469
chr18	13027270	13027370	6876938	0	+	0.41	(0.408,0.44]	chr18	681391	77	INTRON	INTRON	CEP192	ENSG00000101639.19	ENST00000325971.12:ENST00000506447.5:ENST00000589596.5:ENST00000513432.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	49	2	1.88062	2.5965949999999998	3.31257	0.0534548	0.00198621	0.162935	0.0411469
chr16	28159012	28159111	6467928	0	-	0.474747	(0.44,0.476]	chr16	624556	21	INTRON	INTRON	XPO6	ENSG00000169180.12	ENST00000304658.10:ENST00000565698.5:ENST00000574435.1:ENST00000569973.1:ENST00000573645.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	78	2	2.07016	2.59657	3.12298	0.0151815	4.66209e-4	0.0994339	0.0195589
chr1	168019144	168019244	249324	0	+	0.45	(0.44,0.476]	chr1	29609	2	SS3_PROX	SS3_PROX:INTRON	DCAF6	ENSG00000143164.16	ENST00000432587.6:ENST00000367843.7:ENST00000470721.5:ENST00000367840.4:ENST00000312263.10:ENST00000460432.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	130	2	2.44579	2.59656	2.74733	9.96884e-4	4.0259e-4	0.0288906	0.0180314
chr9	135951289	135951388	4372468	0	-	0.383838	(0.378,0.408]	chr9	402541	30	INTRON	INTRON	UBAC1	ENSG00000130560.9	ENST00000371756.4:ENST00000478485.1:ENST00000486258.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	112	2	2.42594	2.5965550000000004	2.76717	0.00428028	2.59679e-4	0.0574861	0.014326
chr6	99399685	99399783	3165872	0	-	0.326531	(0.32,0.35]	chr6	295275	22	UTR3	UTR3:EXON_MRNA	PNISR	ENSG00000132424.17	ENST00000681615.1:ENST00000369239.10:ENST00000647811.1:ENST00000481229.2:ENST00000679525.1:ENST00000681611.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	104	2	2.27097	2.596505	2.92204	0.00347642	0.00202818	0.0540643	0.04086
chr16	23970516	23970616	6325107	0	+	0.4	(0.378,0.408]	chr16	605705	63	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000498739.1:ENST00000647422.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	50	2	2.23831	2.59645	2.95459	0.0179575	0.00957623	0.114265	0.0820838
chr6	31817858	31817946	2843799	0	+	0.261364	[0,0.28]	chr6	267896	3	UTR3	UTR3:EXON_MRNA	HSPA1A	ENSG00000204389.10	ENST00000608703.1:ENST00000375651.7	protein_coding	protein_coding	protein_coding	protein_coding	10	185	2	1.64559	2.59645	3.54731	0.0200281	1.08476e-4	0.109608	0.00880907
chr20	32577672	32577772	7326844	0	-	0.38	(0.378,0.408]	chr20	746144	284	INTRON	INTRON	NOL4L	ENSG00000197183.15	ENST00000621426.7:ENST00000201961.6:ENST00000485364.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	175	2	1.72042	2.59644	3.47246	0.00537628	2.59391e-5	0.066464	0.00422093
chr17	40302296	40302394	6610285	0	+	0.367347	(0.35,0.378]	chr17	643837	4	UTR3	UTR3:EXON_MRNA	CDC6	ENSG00000094804.12	ENST00000209728.9	protein_coding	protein_coding	protein_coding	protein_coding	12	202	2	2.56838	2.59642	2.62446	2.95089e-4	2.7105e-4	0.0153633	0.0150944
chr19	15311341	15311441	7147194	0	-	0.45	(0.44,0.476]	chr19	721965	310	INTRON	INTRON	BRD4	ENSG00000141867.19	ENST00000679869.1:ENST00000360016.9:ENST00000594841.5:ENST00000597315.5:ENST00000601941.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	48	2	2.39003	2.59639	2.80275	0.0146513	0.0106488	0.0982604	0.0915714
chr8	67208886	67208986	3962435	0	-	0.41	(0.408,0.44]	chr8	363563	18	INTRON	INTRON	ARFGEF1	ENSG00000066777.9	ENST00000520381.5:ENST00000518789.5:ENST00000262215.8:ENST00000518230.5	protein_coding	protein_coding	protein_coding	protein_coding	4	59	2	1.64062	2.596385	3.55215	0.0557275	7.01039e-4	0.165463	0.0241881
chr6	31755113	31755212	2843646	0	+	0.343434	(0.32,0.35]	chr6	267818	11	INTRON	INTRON	MSH5:MSH5-SAPCD1	ENSG00000204410.16:ENSG00000255152.8	ENST00000375755.8:ENST00000375750.9:ENST00000650702.1:ENST00000493662.6:ENST00000375703.7:ENST00000375740.7:ENST00000423982.6:ENST00000463144.5:ENST00000450148.5:ENST00000468602.5:ENST00000468136.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	13	224	2	2.20577	2.5963399999999996	2.98691	0.00146379	4.13214e-5	0.0346588	0.00519938
chr9	111464419	111464518	4315093	0	-	0.373737	(0.35,0.378]	chr9	396838	125	INTRON	INTRON	ECPAS	ENSG00000136813.15	ENST00000684092.1:ENST00000338205.9:ENST00000259335.8:ENST00000602447.5:ENST00000602978.1	protein_coding	protein_coding	protein_coding	protein_coding	2	41	2	2.30249	2.59626	2.89003	0.0519726	0.0122391	0.176696	0.0910127
chrX	2499810	2499910	7745607	0	-	0.48	(0.476,0.515]	chrX	792975	1	SS5_PROX	SS5_PROX:INTRON	DHRSX:ZBED1	ENSG00000169084.15:ENSG00000214717.12	ENST00000334651.11:ENST00000412516.7:ENST00000444280.6:ENST00000441131.7:ENST00000478825.7:ENST00000430536.7:ENST00000381222.8:ENST00000381223.9:ENST00000652001.1:ENST00000381218.8:ENST00000461691.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	90	2	1.99457	2.59619	3.19781	0.009924	4.3655e-4	0.0877296	0.0191798
chr3	6586047	6586147	1357104	0	+	0.31	(0.28,0.32]	chr3	142522	16	INTRON	INTRON	ENSG00000189229	ENSG00000189229.12	ENST00000433639.1:ENST00000655754.1:ENST00000658468.1:ENST00000669512.1:ENST00000667028.1:ENST00000655541.1:ENST00000668643.1:ENST00000671568.1:ENST00000671036.1:ENST00000669798.1:ENST00000655753.1:ENST00000655856.1:ENST00000658398.1:ENST00000661518.1:ENST00000661279.1:ENST00000655495.1:ENST00000663041.1:ENST00000659827.1:ENST00000667716.1:ENST00000668416.1:ENST00000658133.1:ENST00000342990.4:ENST00000660054.1:ENST00000671370.1	lncRNA	lncRNA	lncRNA	lncRNA	7	138	2	2.37433	2.59611	2.81789	0.00356769	7.16126e-4	0.0532113	0.0244108
chr19	36548920	36549018	7174654	0	-	0.571429	(0.57,1]	chr19	725068	2	INTRON	INTRON	ZNF529	ENSG00000186020.13	ENST00000591340.6:ENST00000334116.7:ENST00000586115.5:ENST00000585983.5:ENST00000585960.5	protein_coding	protein_coding	protein_coding	protein_coding	7	55	2	1.58776	2.596075	3.60439	0.0295652	1.64192e-5	0.142135	0.00324999
chr4	99935993	99936093	2209506	0	-	0.4	(0.378,0.408]	chr4	216403	50	INTRON	INTRON	DNAJB14	ENSG00000164031.17	ENST00000442697.7:ENST00000334223.6:ENST00000398991.3:ENST00000426476.5:ENST00000474664.5:ENST00000471738.1:ENST00000469942.1:ENST00000610281.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	63	2	2.13797	2.59595	3.05393	0.0124882	0.00551532	0.0923444	0.0672816
chr3	49777481	49777581	1694793	0	-	0.48	(0.476,0.515]	chr3	173818	287	INTRON	INTRON	IP6K1	ENSG00000176095.12	ENST00000321599.9:ENST00000395238.5:ENST00000613416.4:ENST00000468463.5:ENST00000460540.1:ENST00000498149.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	59	2	1.52615	2.5959	3.66565	0.0739267	4.18031e-4	0.190914	0.0182827
chr8	129435389	129435489	4059625	0	-	0.35	(0.32,0.35]	chr8	369584	328	INTRON	INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1:ENST00000676273.1:ENST00000667643.1:ENST00000668791.1:ENST00000663716.1:ENST00000663572.1:ENST00000676148.1:ENST00000667962.1:ENST00000674877.1:ENST00000675316.1:ENST00000674656.1:ENST00000446592.7:ENST00000667341.1:ENST00000675186.1:ENST00000652971.1:ENST00000661447.1:ENST00000674863.1:ENST00000675498.1:ENST00000675527.1:ENST00000676108.1:ENST00000657647.1:ENST00000675589.1:ENST00000675913.1:ENST00000675109.1:ENST00000671632.1:ENST00000671311.1:ENST00000676099.1:ENST00000660652.1:ENST00000675522.1:ENST00000675183.1:ENST00000658861.1:ENST00000663991.1:ENST00000675044.1:ENST00000675435.1:ENST00000674639.1:ENST00000676069.1:ENST00000675532.1:ENST00000674762.1:ENST00000523151.6:ENST00000675948.1:ENST00000665364.1:ENST00000657251.1:ENST00000675166.1:ENST00000674883.1:ENST00000675867.1:ENST00000674580.1:ENST00000675393.1:ENST00000520048.1:ENST00000674906.1:ENST00000676030.1:ENST00000670588.1:ENST00000675072.1:ENST00000664936.1:ENST00000652914.1:ENST00000657069.1	lncRNA	lncRNA	lncRNA	lncRNA	3	57	2	2.22429	2.595875	2.96746	0.0226421	0.00815799	0.117557	0.0810802
chr10	96529552	96529649	4673847	0	-	0.278351	[0,0.28]	chr10	430667	10	INTRON	INTRON	TM9SF3	ENSG00000077147.16	ENST00000371142.9:ENST00000649367.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	103	2	2.45788	2.59586	2.73384	0.0246308	0.00202916	0.12011	0.0417095
chr11	66621138	66621238	4810844	0	+	0.46	(0.44,0.476]	chr11	447860	2	SS5_PROX	SS5_PROX:INTRON	RBM14-RBM4:RBM14	ENSG00000248643.5:ENSG00000239306.5	ENST00000412278.2:ENST00000393979.3:ENST00000511114.1:ENST00000310137.5:ENST00000409372.1:ENST00000421355.1:ENST00000443702.1:ENST00000500635.2:ENST00000409738.4:ENST00000461478.1:ENST00000496694.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	21	246	2	1.67451	2.595795	3.51708	0.00276534	4.82786e-6	0.0486755	0.00161993
chr7	50314205	50314305	3316795	0	+	0.52	(0.515,0.57]	chr7	308247	49	INTRON	INTRON	IKZF1	ENSG00000185811.20	ENST00000642219.1:ENST00000645066.1:ENST00000484847.6:ENST00000646110.1:ENST00000331340.8:ENST00000413698.5:ENST00000349824.8:ENST00000343574.9:ENST00000357364.8:ENST00000440768.6:ENST00000346667.8:ENST00000615491.4:ENST00000359197.9:ENST00000439701.2:ENST00000438033.5:ENST00000492782.6:ENST00000462201.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	68	2	1.91916	2.595785	3.27241	0.0231902	1.80226e-4	0.118148	0.0116696
chr1	227048806	227048905	648996	0	-	0.232323	[0,0.28]	chr1	76972	4	INTRON	INTRON	CDC42BPA	ENSG00000143776.20	ENST00000366766.8:ENST00000366769.7:ENST00000334218.9:ENST00000366767.7:ENST00000448940.5:ENST00000442054.5:ENST00000366764.8:ENST00000441725.1	protein_coding	protein_coding	protein_coding	protein_coding	2	51	2	2.38757	2.595765	2.80396	0.0552962	0.0161429	0.165463	0.109464
chrX	53658019	53658119	7821622	0	-	0.37	(0.35,0.378]	chrX	798234	35	INTRON	INTRON	HUWE1	ENSG00000086758.16	ENST00000262854.11:ENST00000342160.7:ENST00000218328.12:ENST00000446750.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	63	2	2.20096	2.5957	2.99044	0.00894806	0.0087123	0.0844834	0.0799922
chr4	463891	463991	2092818	0	-	0.22	[0,0.28]	chr4	206783	191	INTRON	INTRON	ABCA11P:ZNF721	ENSG00000251595.7:ENSG00000182903.16	ENST00000451020.6:ENST00000514396.5:ENST00000507854.1:ENST00000515578.5:ENST00000506646.5:ENST00000507078.1:ENST00000511833.3:ENST00000338977.5:ENST00000505900.1	protein_coding	protein_coding	protein_coding:transcribed_processed_pseudogene	protein_coding:nonsense_mediated_decay:processed_transcript	2	54	2	2.29142	2.5956200000000003	2.89982	0.0592143	0.0158893	0.189982	0.101453
chrX	44946083	44946183	7649331	0	+	0.5	(0.476,0.515]	chrX	782726	717	INTRON	INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000675440.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000621147.5:ENST00000475233.1:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	110	2	2.35049	2.595585	2.84068	0.00217133	6.9061e-4	0.0417893	0.0240212
chr4	55176	55274	1905305	0	+	0.530612	(0.515,0.57]	chr4	190993	13	INTRON	INTRON	ZNF595	ENSG00000272602.6	ENST00000608255.2:ENST00000609518.5:ENST00000509152.3:ENST00000610261.6:ENST00000502981.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	11	136	2	2.24052	2.59556	2.9506	6.90756e-4	9.37882e-5	0.0240212	0.00860621
chr7	158786907	158787006	3689382	0	-	0.434343	(0.408,0.44]	chr7	342393	132	INTRON	INTRON	ESYT2	ENSG00000117868.18	ENST00000251527.10:ENST00000275418.13:ENST00000652148.1:ENST00000483958.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	94	2	2.39349	2.59556	2.79763	0.00467273	5.76635e-4	0.0600108	0.0218153
chr6	16130056	16130156	2825782	0	+	0.5	(0.476,0.515]	chr6	265304	1	SS3_PROX	SS3_PROX:INTRON	MYLIP	ENSG00000007944.15	ENST00000356840.8:ENST00000349606.4	protein_coding	protein_coding	protein_coding	protein_coding	4	59	2	2.05714	2.595515	3.13389	0.0156961	0.00405473	0.101453	0.0578376
chr1	1111541	1111641	358767	0	-	0.38	(0.378,0.408]	chr1	41375	43	INTRON	INTRON	C1orf159	ENSG00000131591.18	ENST00000379339.5:ENST00000379325.7:ENST00000421241.7:ENST00000467751.5:ENST00000477196.5:ENST00000434641.5:ENST00000482816.5:ENST00000462097.5:ENST00000475119.5:ENST00000472741.5:ENST00000480643.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	79	2	1.36527	2.59551	3.82575	0.0587392	3.23711e-4	0.189982	0.0165891
chr14	55278212	55278312	5725862	0	+	0.38	(0.378,0.408]	chr14	543447	1	SS3_PROX	SS3_PROX:INTRON	FBXO34	ENSG00000178974.11	ENST00000681400.1:ENST00000681904.1:ENST00000679934.1:ENST00000681074.1:ENST00000680682.1:ENST00000680658.1:ENST00000313833.5:ENST00000554940.1:ENST00000440021.1:ENST00000555087.1:ENST00000557647.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	38	2	2.13703	2.5954800000000002	3.05393	0.0797592	0.00551532	0.19979	0.0672816
chr6	149544548	149544647	3245556	0	-	0.383838	(0.378,0.408]	chr6	301538	26	INTRON	INTRON	PPIL4	ENSG00000131013.4	ENST00000253329.3	protein_coding	protein_coding	protein_coding	protein_coding	2	38	2	2.13703	2.5954800000000002	3.05393	0.0797592	0.00551532	0.19979	0.0672816
chr1	54389874	54389974	463596	0	-	0.31	(0.28,0.32]	chr1	55784	332	INTRON	INTRON	SSBP3	ENSG00000157216.16	ENST00000610401.5:ENST00000357475.9:ENST00000371319.8:ENST00000417664.7:ENST00000533946.6:ENST00000371320.8:ENST00000525990.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	46	2	2.46018	2.595475	2.73077	0.0375904	0.0220748	0.156054	0.115395
chr1	155170149	155170246	559883	0	-	0.340206	(0.32,0.35]	chr1	66686	4	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	KRTCAP2	ENSG00000163463.13	ENST00000491084.5:ENST00000295682.6:ENST00000497317.5:ENST00000487350.5:ENST00000463527.5:ENST00000490672.2:ENST00000482246.5:ENST00000471891.5:ENST00000461136.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	9	160	2	2.34177	2.595475	2.84918	0.00213698	2.0298e-4	0.0417866	0.0124395
chr10	5701835	5701935	4384514	0	+	0.32	(0.28,0.32]	chr10	404466	17	INTRON	INTRON	TASOR2	ENSG00000108021.21	ENST00000695832.1:ENST00000328090.9:ENST00000695737.1:ENST00000695833.1:ENST00000695834.1:ENST00000695835.1:ENST00000695836.1:ENST00000473789.5:ENST00000477043.5:ENST00000496681.5:ENST00000480839.6:ENST00000645567.1:ENST00000482419.1:ENST00000463468.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	46	2	2.46018	2.595475	2.73077	0.0375904	0.0220748	0.156054	0.115395
chr2	238448588	238448687	1052786	0	+	0.575758	(0.57,1]	chr2	112004	22	UTR3	UTR3:EXON_MRNA:INTRON	ASB1	ENSG00000065802.12	ENST00000264607.9:ENST00000481566.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	41	2	2.23972	2.595475	2.95123	0.00670296	8.39007e-4	0.0707084	0.0263691
chr6	30321156	30321255	3076938	0	-	0.313131	(0.28,0.32]	chr6	286157	10	INTRON	INTRON	HCG18	ENSG00000231074.10	ENST00000665953.1:ENST00000670397.1:ENST00000659132.1:ENST00000659836.1:ENST00000669374.1:ENST00000653541.1:ENST00000670071.1:ENST00000666294.1:ENST00000657247.1:ENST00000654996.1:ENST00000653301.1:ENST00000658695.1:ENST00000664861.1:ENST00000668974.1:ENST00000654915.1:ENST00000687430.1:ENST00000656629.1:ENST00000602550.5:ENST00000687815.1:ENST00000449544.6:ENST00000426882.6:ENST00000438412.6:ENST00000602698.6:ENST00000454129.5:ENST00000444126.5:ENST00000602290.2:ENST00000412685.8:ENST00000602861.6:ENST00000454269.6:ENST00000686575.1:ENST00000687471.1:ENST00000691282.1:ENST00000413358.6:ENST00000602498.1	lncRNA	lncRNA	lncRNA	lncRNA	2	46	2	2.46018	2.595475	2.73077	0.0375904	0.0220748	0.156054	0.115395
chr6	24705448	24705547	3070584	0	-	0.383838	(0.378,0.408]	chr6	285341	7	UTR3	UTR3:EXON_MRNA	C6orf62	ENSG00000112308.13	ENST00000378119.9	protein_coding	protein_coding	protein_coding	protein_coding	18	276	2	2.33279	2.5954	2.85801	3.61067e-4	1.23059e-5	0.0176009	0.00261354
chr22	47689768	47689866	7539942	0	+	0.357143	(0.35,0.378]	chr22	770699	2	INTRON	INTRON	ENSG00000224271	ENSG00000224271.7	ENST00000650947.2:ENST00000664761.1:ENST00000665418.1:ENST00000651071.1:ENST00000650683.1:ENST00000651536.1:ENST00000652499.1:ENST00000652656.1:ENST00000652072.1:ENST00000651445.1:ENST00000423737.5:ENST00000650834.1:ENST00000650660.1:ENST00000651381.1:ENST00000651056.1:ENST00000652611.1:ENST00000652399.1:ENST00000652123.1:ENST00000651311.1:ENST00000651458.1:ENST00000652505.1:ENST00000652702.2:ENST00000652334.1:ENST00000652030.2:ENST00000651403.1:ENST00000652228.1:ENST00000651124.1:ENST00000650972.1:ENST00000651985.1:ENST00000651754.1:ENST00000651637.1:ENST00000650924.1:ENST00000651003.1:ENST00000652168.1:ENST00000651948.2:ENST00000651293.1:ENST00000651939.1:ENST00000650787.1:ENST00000651517.1:ENST00000651662.1:ENST00000652690.1:ENST00000651638.1:ENST00000670853.1:ENST00000652750.1:ENST00000652080.1:ENST00000651294.1:ENST00000652164.1:ENST00000651538.1:ENST00000650775.1:ENST00000651938.2:ENST00000652675.1:ENST00000651983.1:ENST00000438810.1:ENST00000651033.1:ENST00000651584.1	lncRNA	lncRNA	lncRNA	lncRNA	7	117	2	2.23128	2.59537	2.95946	0.00502483	2.74603e-4	0.0619721	0.0147777
chr6	35879132	35879232	3088397	0	-	0.46	(0.44,0.476]	chr6	288860	44	INTRON	INTRON	SRPK1	ENSG00000096063.16	ENST00000373825.7:ENST00000423325.6:ENST00000346162.10:ENST00000361690.7:ENST00000510290.5:ENST00000373821.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	66	2	2.44514	2.5953	2.74546	0.0087381	0.00326603	0.0845538	0.0508595
chr7	105052490	105052590	3375007	0	+	0.27	[0,0.28]	chr7	315877	111	INTRON	INTRON	KMT2E	ENSG00000005483.22	ENST00000622386.2:ENST00000257745.9:ENST00000334884.9:ENST00000311117.8:ENST00000478990.5:ENST00000495267.5:ENST00000476671.5:ENST00000667857.1:ENST00000474203.5:ENST00000482560.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	138	2	2.22889	2.5950699999999998	2.96125	0.0128832	4.64217e-4	0.0926667	0.0195488
chr1	193038551	193038651	612660	0	-	0.37	(0.35,0.378]	chr1	72474	85	INTRON	INTRON	UCHL5	ENSG00000116750.14	ENST00000367455.8:ENST00000367454.6:ENST00000367450.7:ENST00000367451.8:ENST00000367449.5:ENST00000367448.5:ENST00000421683.1	protein_coding	protein_coding	protein_coding	protein_coding	3	54	2	1.9755	2.59503	3.21456	0.0398617	0.00420814	0.161534	0.0572185
chr9	136452064	136452158	4374707	0	-	0.308511	(0.28,0.32]	chr9	402990	8	EXON_MRNA	EXON_MRNA:INTRON	SEC16A	ENSG00000148396.19	ENST00000290037.10:ENST00000313050.11:ENST00000371706.8:ENST00000453963.5:ENST00000277537.10:ENST00000684901.1:ENST00000689049.1:ENST00000688461.1:ENST00000690691.1:ENST00000431893.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	73	2	2.02902	2.595015	3.16101	0.0174423	0.0061861	0.11269	0.0677395
chr1	50814965	50815065	450802	0	-	0.3	(0.28,0.32]	chr1	54261	129	INTRON	INTRON	FAF1	ENSG00000185104.21	ENST00000396153.7:ENST00000487898.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	45	2	2.32871	2.59492	2.86113	0.0581621	0.0122675	0.167723	0.0969406
chr7	77844481	77844580	3344409	0	+	0.30303	(0.28,0.32]	chr7	311490	38	INTRON	INTRON	PHTF2	ENSG00000006576.17	ENST00000422959.7:ENST00000416283.6:ENST00000307305.12:ENST00000424760.5:ENST00000415251.6:ENST00000275575.11:ENST00000450574.5:ENST00000248550.7	protein_coding	protein_coding	protein_coding	protein_coding	2	45	2	2.32871	2.59492	2.86113	0.0581621	0.0122675	0.167723	0.0969406
chr8	67145899	67145999	3777477	0	+	0.29	(0.28,0.32]	chr8	350387	67	INTRON	INTRON	CSPP1	ENSG00000104218.16	ENST00000676113.1:ENST00000675306.2:ENST00000678156.1:ENST00000262210.11:ENST00000678017.1:ENST00000675869.1:ENST00000678542.1:ENST00000677619.1:ENST00000676605.1:ENST00000676471.1:ENST00000677256.1:ENST00000676847.1:ENST00000677009.1:ENST00000676317.1:ENST00000677592.1:ENST00000676573.1:ENST00000678318.1:ENST00000677473.1:ENST00000674993.1:ENST00000679226.1:ENST00000676882.1:ENST00000675955.1:ENST00000677430.1:ENST00000677455.1:ENST00000678616.1:ENST00000678362.1:ENST00000679112.1:ENST00000678645.1:ENST00000676567.1:ENST00000677845.1:ENST00000519163.6:ENST00000676858.1:ENST00000678747.1:ENST00000519668.1:ENST00000676697.1:ENST00000677855.1:ENST00000676695.1:ENST00000676534.1:ENST00000678138.1:ENST00000678807.1:ENST00000677052.1:ENST00000679274.1:ENST00000679042.1:ENST00000678635.1:ENST00000676804.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	45	2	2.32871	2.59492	2.86113	0.0581621	0.0122675	0.167723	0.0969406
chrX	49241615	49241715	7659555	0	+	0.32	(0.28,0.32]	chrX	784105	2	SS3_PROX	SS3_PROX:INTRON	CCDC22	ENSG00000101997.13	ENST00000376227.4:ENST00000496651.5:ENST00000490300.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	45	2	2.32871	2.59492	2.86113	0.0581621	0.0122675	0.167723	0.0969406
chr8	102407976	102408075	4012709	0	-	0.50505	(0.476,0.515]	chr8	367237	460	INTRON	INTRON	UBR5	ENSG00000104517.13	ENST00000520539.6:ENST00000220959.8:ENST00000521922.5	protein_coding	protein_coding	protein_coding	protein_coding	8	107	2	1.94021	2.594905	3.2496	0.00523626	3.39435e-4	0.0656295	0.0170719
chr17	81686118	81686214	6691016	0	+	0.5625	(0.515,0.57]	chr17	654014	5	EXON_MRNA	EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HGS	ENSG00000185359.14	ENST00000677161.1:ENST00000678096.1:ENST00000679191.1:ENST00000676546.1:ENST00000678387.1:ENST00000679170.1:ENST00000677109.1:ENST00000677484.1:ENST00000678115.1:ENST00000677243.1:ENST00000677044.1:ENST00000679336.1:ENST00000678196.1:ENST00000676462.1:ENST00000576393.5:ENST00000576498.5:ENST00000678105.1:ENST00000676478.1:ENST00000329138.9:ENST00000676721.1:ENST00000677209.1:ENST00000677225.1:ENST00000678866.1:ENST00000679275.1:ENST00000678541.1:ENST00000676729.1:ENST00000572392.2:ENST00000677012.1:ENST00000577012.1:ENST00000571518.6:ENST00000678846.1:ENST00000678658.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	50	2	2.22166	2.5949	2.96814	0.00756432	0.00735516	0.0765982	0.0749063
chr19	40460436	40460536	7184529	0	-	0.49	(0.476,0.515]	chr19	726754	15	INTRON	INTRON	BLVRB	ENSG00000090013.11	ENST00000643519.1:ENST00000263368.9:ENST00000595483.5:ENST00000643596.1:ENST00000597870.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	14	152	2	1.77231	2.59489	3.41747	0.00296905	1.45317e-4	0.050094	0.0110154
chr5	95765587	95765685	2431592	0	+	0.428571	(0.408,0.44]	chr5	233672	16	INTRON	INTRON	RHOBTB3	ENSG00000164292.13	ENST00000379982.8	protein_coding	protein_coding	protein_coding	protein_coding	7	109	2	2.32619	2.59488	2.86357	0.00239266	5.90913e-4	0.0450826	0.0225024
chr7	5047441	5047532	3271731	0	+	0.340659	(0.32,0.35]	chr7	304054	7	INTRON	INTRON	RBAK	ENSG00000146587.18	ENST00000353796.7:ENST00000396912.2	protein_coding	protein_coding	protein_coding	protein_coding	4	68	2	1.77409	2.594815	3.41554	0.0414296	0.00153152	0.146067	0.0361484
chr11	9584261	9584360	4730908	0	+	0.434343	(0.408,0.44]	chr11	438113	22	INTRON	INTRON	WEE1	ENSG00000166483.12	ENST00000680141.1:ENST00000450114.7:ENST00000299613.10:ENST00000681684.1:ENST00000524612.5:ENST00000530712.6:ENST00000530175.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	65	2	2.40661	2.5947500000000003	2.78289	0.011475	0.0022785	0.0888882	0.0437013
chr6	119199659	119199759	3204310	0	-	0.42	(0.408,0.44]	chr6	298290	54	INTRON	INTRON	MAN1A1	ENSG00000111885.7	ENST00000368468.4	protein_coding	protein_coding	protein_coding	protein_coding	4	65	2	2.40661	2.5947500000000003	2.78289	0.011475	0.0022785	0.0888882	0.0437013
chr19	10179982	10180082	7134720	0	-	0.43	(0.408,0.44]	chr19	719232	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DNMT1	ENSG00000130816.17	ENST00000340748.8:ENST00000359526.9:ENST00000592705.5:ENST00000679103.1:ENST00000677634.1:ENST00000676820.1:ENST00000677250.1:ENST00000677013.1:ENST00000677685.1:ENST00000677616.1:ENST00000676610.1:ENST00000678804.1:ENST00000679313.1:ENST00000677946.1:ENST00000586988.5:ENST00000588952.5:ENST00000588118.5:ENST00000592342.5:ENST00000592054.5:ENST00000590619.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	65	2	2.45003	2.5947199999999997	2.73941	0.00990006	0.002744	0.0838372	0.0484022
chr20	6023279	6023379	7230722	0	+	0.29	(0.28,0.32]	chr20	734842	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	CRLS1	ENSG00000088766.12	ENST00000452938.5:ENST00000378863.9:ENST00000378868.4:ENST00000489345.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	45	2	2.51488	2.594705	2.67453	0.0380957	0.021289	0.141678	0.123318
chr6	34845333	34845432	2848936	0	+	0.292929	(0.28,0.32]	chr6	269159	86	INTRON	INTRON	UHRF1BP1	ENSG00000065060.18	ENST00000192788.6	protein_coding	protein_coding	protein_coding	protein_coding	2	45	2	2.51488	2.594705	2.67453	0.0380957	0.021289	0.141678	0.123318
chrX	11423049	11423149	7761585	0	-	0.32	(0.28,0.32]	chrX	793522	873	INTRON	INTRON	ARHGAP6	ENSG00000047648.23	ENST00000380736.5:ENST00000337414.9:ENST00000495242.5:ENST00000489330.6:ENST00000380718.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	45	2	2.51488	2.594705	2.67453	0.0380957	0.021289	0.141678	0.123318
chr22	18568798	18568898	7551040	0	-	0.47	(0.44,0.476]	chr22	771829	159	INTRON	INTRON	PI4KAP1	ENSG00000274602.5	ENST00000612500.4:ENST00000611748.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	7	81	2	1.37831	2.59466	3.81101	0.0447298	3.0729e-4	0.163255	0.0161362
chr1	211314058	211314155	306263	0	+	0.298969	(0.28,0.32]	chr1	35318	4	UTR3	UTR3:EXON_MRNA	RCOR3	ENSG00000117625.14	ENST00000367006.8:ENST00000419091.7:ENST00000367005.8:ENST00000486666.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	74	2	1.79721	2.594625	3.39204	0.0408024	0.00188405	0.1451	0.0402736
chr19	15378388	15378488	7147704	0	-	0.4	(0.378,0.408]	chr19	722055	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	AKAP8	ENSG00000105127.10	ENST00000269701.7:ENST00000680461.1:ENST00000681812.1:ENST00000680336.1:ENST00000680245.1:ENST00000681018.1:ENST00000598597.7:ENST00000599883.2:ENST00000537303.5:ENST00000595416.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	38	2	2.45932	2.5946249999999997	2.72993	0.0346754	0.0188736	0.148144	0.108861
chr15	56942085	56942185	6032346	0	+	0.42	(0.408,0.44]	chr15	574663	206	INTRON	INTRON	TCF12	ENSG00000140262.18	ENST00000438423.6:ENST00000267811.9:ENST00000333725.10:ENST00000560190.5:ENST00000559609.5:ENST00000558908.5:ENST00000557843.5:ENST00000557947.5:ENST00000561152.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	59	2	1.81759	2.594605	3.37162	0.0316273	0.00208674	0.144405	0.0411801
chr20	50524682	50524782	7286057	0	+	0.49	(0.476,0.515]	chr20	741241	137	INTRON	INTRON	PTPN1	ENSG00000196396.10	ENST00000541713.5:ENST00000371621.5	protein_coding	protein_coding	protein_coding	protein_coding	5	67	2	1.78917	2.5946	3.40003	0.022887	0.00139193	0.118056	0.0341261
chr2	38300828	38300927	1098564	0	-	0.262626	[0,0.28]	chr2	117813	1	INTRON	INTRON	ATL2	ENSG00000119787.14	ENST00000378954.9:ENST00000406122.5:ENST00000405384.6:ENST00000402054.5:ENST00000419554.6:ENST00000651368.1:ENST00000452935.6:ENST00000629272.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	86	2	2.45531	2.594575	2.73384	0.0246308	0.00415834	0.12011	0.0590857
chr12	54293481	54293581	5330917	0	-	0.41	(0.408,0.44]	chr12	508647	1	SS3_PROX	SS3_PROX:INTRON	NFE2	ENSG00000123405.14	ENST00000435572.7:ENST00000312156.8:ENST00000540264.2:ENST00000553070.5:ENST00000553198.1	protein_coding	protein_coding	protein_coding	protein_coding	6	96	2	2.46587	2.59455	2.72323	0.00280622	0.00114246	0.0488779	0.0307966
chr1	202794491	202794591	620611	0	-	0.37	(0.35,0.378]	chr1	73670	170	INTRON	INTRON	KDM5B	ENSG00000117139.18	ENST00000367265.9:ENST00000648338.1:ENST00000649542.1:ENST00000647757.1:ENST00000367264.7:ENST00000648473.1:ENST00000650569.1:ENST00000648056.1:ENST00000649770.1:ENST00000648469.1:ENST00000650417.1:ENST00000235790.9:ENST00000648738.1:ENST00000648958.1:ENST00000602511.1:ENST00000650368.1:ENST00000649200.1:ENST00000648354.1:ENST00000650493.1:ENST00000470573.5:ENST00000467487.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	39	2	2.32443	2.5944700000000003	2.86451	0.0544216	0.0109111	0.164972	0.0923273
chr12	872936	873035	5057395	0	+	0.353535	(0.35,0.378]	chr12	477488	12	INTRON	INTRON	WNK1	ENSG00000060237.19	ENST00000315939.11:ENST00000340908.9:ENST00000535572.5:ENST00000537687.5:ENST00000530271.6:ENST00000675631.1:ENST00000676347.1:ENST00000545285.5:ENST00000535698.1:ENST00000674810.1:ENST00000574679.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	39	2	2.32443	2.5944700000000003	2.86451	0.0544216	0.0109111	0.164972	0.0923273
chr19	24062739	24062835	7044155	0	+	0.375	(0.35,0.378]	chr19	702365	17	INTRON	INTRON	ENSG00000268362:ZNF254	ENSG00000268362.6:ENSG00000213096.11	ENST00000664647.1:ENST00000613065.4:ENST00000666101.1:ENST00000653003.1:ENST00000666488.1:ENST00000594934.6:ENST00000654353.1:ENST00000662140.1:ENST00000668060.1:ENST00000660137.1:ENST00000652968.1:ENST00000670905.1:ENST00000658858.1:ENST00000654594.1:ENST00000654372.1:ENST00000652837.1:ENST00000654611.1:ENST00000597683.1:ENST00000671141.1:ENST00000653308.1:ENST00000661386.1:ENST00000668656.1:ENST00000663903.1:ENST00000668169.1:ENST00000663458.1:ENST00000662903.1:ENST00000665638.1:ENST00000668701.1:ENST00000655664.1:ENST00000666861.1:ENST00000664627.1:ENST00000661650.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	2	39	2	2.32443	2.5944700000000003	2.86451	0.0544216	0.0109111	0.164972	0.0923273
chr8	55904375	55904474	3754580	0	+	0.363636	(0.35,0.378]	chr8	349249	239	INTRON	INTRON	LYN	ENSG00000254087.8	ENST00000519728.6:ENST00000520220.6	protein_coding	protein_coding	protein_coding	protein_coding	2	39	2	2.32443	2.5944700000000003	2.86451	0.0544216	0.0109111	0.164972	0.0923273
chr19	1589120	1589218	7112488	0	-	0.530612	(0.515,0.57]	chr19	714541	29	INTRON	INTRON	MBD3:ENSG00000267059	ENSG00000071655.18:ENSG00000267059.2	ENST00000434436.8:ENST00000156825.5:ENST00000585937.1:ENST00000585967.5:ENST00000592965.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	52	2	2.20213	2.59445	2.98677	0.00853365	0.00632549	0.0780043	0.0722266
chr19	10109230	10109330	7012214	0	+	0.53	(0.515,0.57]	chr19	696444	2	SS3_PROX	SS3_PROX:INTRON	PPAN	ENSG00000130810.20	ENST00000253107.12:ENST00000393793.5:ENST00000446223.5:ENST00000466025.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	52	2	2.20213	2.59445	2.98677	0.00853365	0.00632549	0.0780043	0.0722266
chr1	204547852	204547947	297746	0	+	0.442105	(0.44,0.476]	chr1	34326	6	INTRON	INTRON	MDM4	ENSG00000198625.14	ENST00000367183.7:ENST00000391947.6:ENST00000454264.6:ENST00000612738.4:ENST00000614459.4:ENST00000616250.4:ENST00000367182.8:ENST00000463049.5:ENST00000367179.7:ENST00000444261.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	36	2	2.29842	2.5944450000000003	2.89047	0.0552483	0.00955699	0.165463	0.0863913
chr16	74950957	74951057	6526946	0	-	0.47	(0.44,0.476]	chr16	632131	1	SS5_PROX	SS5_PROX:INTRON	WDR59	ENSG00000103091.15	ENST00000262144.11:ENST00000616369.4:ENST00000536050.5:ENST00000568462.5:ENST00000568323.5:ENST00000563111.2:ENST00000562331.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	36	2	2.29842	2.5944450000000003	2.89047	0.0552483	0.00955699	0.165463	0.0863913
chr3	33035357	33035455	1650527	0	-	0.459184	(0.44,0.476]	chr3	169225	8	INTRON	INTRON	GLB1	ENSG00000170266.16	ENST00000399402.7:ENST00000307363.10:ENST00000307377.12:ENST00000467571.5:ENST00000482097.5:ENST00000485698.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	36	2	2.29842	2.5944450000000003	2.89047	0.0552483	0.00955699	0.165463	0.0863913
chr6	63670544	63670643	2883638	0	+	0.464646	(0.44,0.476]	chr6	273559	234	INTRON	INTRON	PHF3	ENSG00000118482.12	ENST00000262043.8:ENST00000506783.5:ENST00000481385.6:ENST00000515594.5:ENST00000494284.6:ENST00000509876.5:ENST00000509330.5:ENST00000393387.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	36	2	2.29842	2.5944450000000003	2.89047	0.0552483	0.00955699	0.165463	0.0863913
chr12	53460233	53460330	5142972	0	+	0.505155	(0.476,0.515]	chr12	485403	4	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	PCBP2	ENSG00000197111.16	ENST00000546463.6:ENST00000437231.5:ENST00000447282.5:ENST00000359282.9:ENST00000549863.5:ENST00000359462.9:ENST00000550520.6:ENST00000552296.6:ENST00000551104.5:ENST00000552819.5:ENST00000455667.7:ENST00000439930.7:ENST00000548933.5:ENST00000546652.6:ENST00000562264.5:ENST00000548190.1:ENST00000550585.5:ENST00000547987.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	151	2	2.55638	2.59443	2.63248	3.87508e-4	3.62327e-4	0.0177751	0.0176176
chr7	111330783	111330883	3621790	0	-	0.31	(0.28,0.32]	chr7	337093	3669	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	103	2	2.1076	2.594385	3.08117	0.0133585	0.001245	0.100772	0.0322969
chr6	87228130	87228230	2913991	0	+	0.38	(0.378,0.408]	chr6	275311	43	INTRON	INTRON	ZNF292	ENSG00000188994.13	ENST00000369577.8:ENST00000518845.1:ENST00000339907.8:ENST00000496806.2	protein_coding	protein_coding	protein_coding	protein_coding	4	70	2	2.35527	2.594355	2.83344	0.0121511	0.00244811	0.0963966	0.0445777
chr12	62356174	62356273	5150525	0	+	0.252525	[0,0.28]	chr12	487365	3	INTRON	INTRON	USP15	ENSG00000135655.16	ENST00000353364.7:ENST00000280377.10:ENST00000547317.5:ENST00000549268.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	69	2	2.28885	2.594335	2.89982	0.0181093	0.0158893	0.114853	0.101453
chr8	92874620	92874720	3990852	0	-	0.35	(0.32,0.35]	chr8	365358	882	INTRON	INTRON	FLJ46284	ENSG00000248858.7	ENST00000504861.2	lncRNA	lncRNA	lncRNA	lncRNA	9	153	2	2.13598	2.594335	3.05269	0.00241817	3.33917e-4	0.0454275	0.0169431
chr1	172554269	172554369	254901	0	+	0.35	(0.32,0.35]	chr1	30368	5	INTRON	INTRON	SUCO	ENSG00000094975.14	ENST00000367723.8:ENST00000608151.5:ENST00000616058.4:ENST00000263688.4:ENST00000610051.5:ENST00000608804.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	56	2	2.49929	2.5942499999999997	2.68921	0.0230336	0.00776612	0.118056	0.0787356
chr21	36321300	36321400	7403698	0	+	0.34	(0.32,0.35]	chr21	754279	6	INTRON	INTRON	MORC3	ENSG00000159256.13	ENST00000492336.5:ENST00000400485.6:ENST00000487909.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	56	2	2.49929	2.5942499999999997	2.68921	0.0230336	0.00776612	0.118056	0.0787356
chr3	41202778	41202877	1403057	0	+	0.343434	(0.32,0.35]	chr3	147417	20	INTRON	INTRON	CTNNB1	ENSG00000168036.18	ENST00000643541.1:ENST00000426215.5:ENST00000645210.1:ENST00000646381.1:ENST00000405570.6:ENST00000642248.1:ENST00000433400.6:ENST00000642992.1:ENST00000431914.6:ENST00000642836.1:ENST00000396185.8:ENST00000642986.1:ENST00000644678.1:ENST00000643031.1:ENST00000396183.7:ENST00000645982.1:ENST00000453024.6:ENST00000645900.1:ENST00000647264.1:ENST00000646174.1:ENST00000643992.1:ENST00000642886.1:ENST00000647390.1:ENST00000643052.1:ENST00000488914.2:ENST00000349496.11:ENST00000642426.1:ENST00000646074.1:ENST00000645276.1:ENST00000644138.1:ENST00000646116.1:ENST00000644873.1:ENST00000643865.1:ENST00000644867.1:ENST00000646725.1:ENST00000645493.1:ENST00000646369.1:ENST00000643977.1:ENST00000647413.1:ENST00000644524.1:ENST00000645305.1:ENST00000643297.1:ENST00000450969.6:ENST00000642315.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	56	2	2.49929	2.5942499999999997	2.68921	0.0230336	0.00776612	0.118056	0.0787356
chr22	21858824	21858924	7561298	0	-	0.34	(0.32,0.35]	chr22	773388	506	INTRON	INTRON	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	7	116	2	2.02448	2.59424	3.164	0.00595393	7.36249e-4	0.0698475	0.02495
chr7	150281952	150282052	3673234	0	-	0.44	(0.408,0.44]	chr7	340876	325	INTRON	INTRON	ACTR3C	ENSG00000106526.11	ENST00000478393.5:ENST00000683684.1:ENST00000252071.8	protein_coding	protein_coding	protein_coding	protein_coding	4	58	2	2.03431	2.594225	3.15414	0.0154896	0.00469847	0.108998	0.0600108
chr10	35416741	35416840	4425306	0	+	0.585859	(0.57,1]	chr10	407905	215	INTRON	INTRON	CCNY	ENSG00000108100.18	ENST00000374706.5:ENST00000490012.6:ENST00000493157.6:ENST00000374704.8:ENST00000265375.13:ENST00000339497.7:ENST00000492478.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	20	2	2.52405	2.594215	2.66438	0.0263139	0.0171563	0.133676	0.104099
chr13	112793656	112793756	5547289	0	+	0.59	(0.57,1]	chr13	529931	80	INTRON	INTRON	ATP11A	ENSG00000068650.19	ENST00000375645.8:ENST00000375630.6:ENST00000487903.5:ENST00000466946.5:ENST00000459908.5:ENST00000418678.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	20	2	2.52405	2.594215	2.66438	0.0263139	0.0171563	0.133676	0.104099
chr2	96827082	96827156	830747	0	+	0.608108	(0.57,1]	chr2	92908	1	SS5_PROX	SS5_PROX:INTRON	CNNM3	ENSG00000168763.16	ENST00000377060.7:ENST00000305510.4:ENST00000465224.5:ENST00000494595.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	20	2	2.52405	2.594215	2.66438	0.0263139	0.0171563	0.133676	0.104099
chr4	86950268	86950368	1993948	0	+	0.58	(0.57,1]	chr4	199032	13	INTRON	INTRON	AFF1	ENSG00000172493.23	ENST00000504956.5:ENST00000395146.9:ENST00000507468.5:ENST00000674009.1:ENST00000503477.5:ENST00000511996.5:ENST00000511442.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	20	2	2.52405	2.594215	2.66438	0.0263139	0.0171563	0.133676	0.104099
chr5	139662313	139662412	2501339	0	+	0.59596	(0.57,1]	chr5	239078	23	INTRON	INTRON	CXXC5	ENSG00000171604.12	ENST00000502295.1:ENST00000504944.1:ENST00000302517.8:ENST00000507139.5:ENST00000504844.1:ENST00000502336.5:ENST00000520967.1:ENST00000511048.1:ENST00000512816.1:ENST00000509238.1	protein_coding	protein_coding	protein_coding	protein_coding	2	20	2	2.52405	2.594215	2.66438	0.0263139	0.0171563	0.133676	0.104099
chr5	179839160	179839258	2780064	0	-	0.510204	(0.476,0.515]	chr5	262418	14	UTR3	UTR3:EXON_MRNA:INTRON	MRNIP	ENSG00000161010.16	ENST00000522663.5:ENST00000518235.5:ENST00000520698.5:ENST00000376931.6:ENST00000523267.1:ENST00000523084.5:ENST00000292586.11:ENST00000518219.5:ENST00000521299.5:ENST00000521333.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	74	2	1.52278	2.594215	3.66565	0.0384487	4.18031e-4	0.142348	0.0182827
chr6	163413760	163413860	3256193	0	-	0.69	(0.57,1]	chr6	302624	8	EXON_LNCRNA	EXON_LNCRNA	CAHM	ENSG00000270419.1	ENST00000604200.1	lncRNA	lncRNA	lncRNA	lncRNA	2	20	2	2.52405	2.594215	2.66438	0.0263139	0.0171563	0.133676	0.104099
chr12	111461903	111462001	5411826	0	-	0.357143	(0.35,0.378]	chr12	516815	2	INTRON	INTRON	ATXN2	ENSG00000204842.18	ENST00000642389.2:ENST00000608853.5:ENST00000672613.1:ENST00000673436.1:ENST00000643669.2:ENST00000389154.7:ENST00000616825.4:ENST00000389153.10:ENST00000550104.5:ENST00000483311.6:ENST00000672335.1:ENST00000647445.1:ENST00000482777.5:ENST00000492467.6:ENST00000673557.1:ENST00000673283.1:ENST00000673273.1:ENST00000673449.1:ENST00000535949.5:ENST00000542287.6:ENST00000550844.2:ENST00000643474.1:ENST00000643694.1:ENST00000550889.5:ENST00000645162.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	39	2	2.53856	2.5941799999999997	2.6498	0.0326077	0.0210137	0.133687	0.122348
chr21	38075556	38075656	7463637	0	-	0.47	(0.44,0.476]	chr21	760281	204	INTRON	INTRON	DSCR4	ENSG00000184029.9	ENST00000398948.5:ENST00000328264.7	lncRNA	lncRNA	lncRNA	lncRNA	9	116	2	2.0432	2.59416	3.14512	0.00226364	5.78837e-4	0.0437013	0.0223209
chr1	29053312	29053404	60358	0	+	0.369565	(0.35,0.378]	chr1	7709	1	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000647918.1:ENST00000646800.1:ENST00000644342.1:ENST00000646189.1:ENST00000482464.6:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000646260.1:ENST00000373798.5:ENST00000644600.1:ENST00000649674.1:ENST00000643173.1:ENST00000343067.9:ENST00000644780.1:ENST00000650265.1:ENST00000648181.1:ENST00000643604.1:ENST00000648891.1:ENST00000373797.2:ENST00000349460.9:ENST00000645184.1:ENST00000645111.1:ENST00000643302.1:ENST00000645999.1:ENST00000642643.1:ENST00000636666.1:ENST00000644848.1:ENST00000644470.1:ENST00000646871.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	114	2	1.54568	2.5941	3.64252	0.0122334	8.02255e-4	0.0969406	0.0262199
chr8	140527447	140527547	4075455	0	-	0.41	(0.408,0.44]	chr8	370170	74	UTR3	UTR3:EXON_MRNA	AGO2	ENSG00000123908.12	ENST00000220592.10	protein_coding	protein_coding	protein_coding	protein_coding	6	94	2	1.84301	2.5940700000000003	3.34513	0.0174311	2.26766e-4	0.112689	0.0138494
chr8	18015894	18015994	3708710	0	+	0.53	(0.515,0.57]	chr8	344030	2	INTRON	INTRON	PCM1	ENSG00000078674.19	ENST00000325083.13:ENST00000519253.5:ENST00000524226.5:ENST00000522275.5:ENST00000519802.5:ENST00000518877.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	32	2	2.12971	2.59405	3.05839	0.0757903	0.00485936	0.194427	0.0640618
chr12	418799	418881	5055580	0	+	0.47561	(0.44,0.476]	chr12	477332	3	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	CCDC77	ENSG00000120647.10	ENST00000540180.5:ENST00000422000.5:ENST00000543504.5:ENST00000540344.5:ENST00000412006.6:ENST00000239830.9:ENST00000538160.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	36	2	2.58033	2.594035	2.60774	0.0255874	0.0247511	0.131869	0.120269
chr17	47161390	47161490	6789109	0	-	0.47	(0.44,0.476]	chr17	669610	11	EXON_LNCRNA	EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CDC27:ENSG00000262265	ENSG00000004897.12:ENSG00000262265.2	ENST00000066544.8:ENST00000531206.5:ENST00000533415.5:ENST00000527547.5:ENST00000526866.5:ENST00000525495.6:ENST00000574304.5:ENST00000573550.5:ENST00000570818.5:ENST00000575483.5:ENST00000532893.5:ENST00000528748.5:ENST00000532575.1:ENST00000647948.1:ENST00000574021.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA:processed_transcript	2	36	2	2.58033	2.594035	2.60774	0.0255874	0.0247511	0.131869	0.120269
chr7	158659405	158659504	3688320	0	-	0.474747	(0.44,0.476]	chr7	342172	6	INTRON	INTRON	NCAPG2	ENSG00000146918.20	ENST00000356309.8:ENST00000432615.5:ENST00000409423.5:ENST00000441982.5:ENST00000467785.5:ENST00000409339.3:ENST00000474940.5:ENST00000475918.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	36	2	2.58033	2.594035	2.60774	0.0255874	0.0247511	0.131869	0.120269
chr16	18878215	18878313	6457614	0	-	0.428571	(0.408,0.44]	chr16	622829	11	EXON_MRNA	EXON_MRNA:INTRON	SMG1	ENSG00000157106.18	ENST00000446231.7:ENST00000565324.5:ENST00000561947.5:ENST00000565224.5:ENST00000568239.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	78	2	2.53861	2.594025	2.64944	0.00481947	0.00202413	0.060277	0.0416117
chr19	1439426	1439515	6995407	0	+	0.483146	(0.476,0.515]	chr19	693237	7	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	RPS15	ENSG00000115268.10	ENST00000233609.8:ENST00000586686.6:ENST00000592588.7:ENST00000591032.1:ENST00000592623.5:ENST00000589656.6:ENST00000586656.5:ENST00000591804.6:ENST00000593052.5:ENST00000592700.2:ENST00000586096.3:ENST00000585665.2:ENST00000617694.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	94	2	2.50778	2.594005	2.68023	0.00353671	0.00128608	0.0546236	0.0328018
chr1	171533558	171533656	253707	0	+	0.387755	(0.378,0.408]	chr1	30158	2	INTRON	INTRON	PRRC2C	ENSG00000117523.18	ENST00000647382.2:ENST00000367742.7:ENST00000338920.8:ENST00000426496.6	protein_coding	protein_coding	protein_coding	protein_coding	10	157	2	2.38009	2.593975	2.80786	0.00145972	9.26992e-5	0.0345816	0.00805823
chr12	91561051	91561151	5384827	0	-	0.33	(0.32,0.35]	chr12	513485	538	INTRON	INTRON	ENSG00000289605	ENSG00000289605.1	ENST00000685093.1	lncRNA	lncRNA	lncRNA	lncRNA	3	56	2	2.19668	2.593965	2.99125	0.021398	0.00958447	0.123719	0.0820838
chr16	23861035	23861135	6324009	0	+	0.33	(0.32,0.35]	chr16	605693	233	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000498058.1:ENST00000645517.1:ENST00000498739.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	56	2	2.19668	2.593965	2.99125	0.021398	0.00958447	0.123719	0.0820838
chr4	109518794	109518891	2019431	0	+	0.43299	(0.408,0.44]	chr4	200814	18	INTRON	INTRON	SEC24B	ENSG00000138802.11	ENST00000504968.6:ENST00000399100.6:ENST00000265175.5	protein_coding	protein_coding	protein_coding	protein_coding	5	79	2	1.96534	2.59396	3.2225799999999998	0.0216499	2.79412e-4	0.11491	0.0148832
chr7	30606227	30606325	3301551	0	+	0.295918	(0.28,0.32]	chr7	306544	9	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	GARS1	ENSG00000106105.15	ENST00000675051.1:ENST00000470392.2:ENST00000674643.1:ENST00000675529.1:ENST00000674807.1:ENST00000675810.1:ENST00000676088.1:ENST00000674815.1:ENST00000676403.1:ENST00000485784.2:ENST00000676210.1:ENST00000478124.6:ENST00000389266.8:ENST00000675693.1:ENST00000676259.1:ENST00000675651.1:ENST00000674616.1:ENST00000674737.1:ENST00000675859.1:ENST00000676140.1:ENST00000674969.1:ENST00000676164.1:ENST00000675886.1:ENST00000444666.6:ENST00000675587.1:ENST00000674851.1:ENST00000675863.1:ENST00000674734.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	82	2	2.39347	2.5939	2.79433	0.0504457	8.00952e-4	0.156383	0.0258804
chr9	135951886	135951985	4372474	0	-	0.50505	(0.476,0.515]	chr9	402541	36	INTRON	INTRON	UBAC1	ENSG00000130560.9	ENST00000371756.4:ENST00000478485.1:ENST00000486258.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	122	2	2.28812	2.593785	2.89945	0.00344676	1.1863e-4	0.0517761	0.00930884
chr4	105458744	105458844	2216540	0	-	0.48	(0.476,0.515]	chr4	217286	16	INTRON	INTRON	PPA2	ENSG00000138777.20	ENST00000341695.10:ENST00000348706.9:ENST00000509031.5:ENST00000351450.10:ENST00000354147.7:ENST00000432483.6:ENST00000510015.5:ENST00000509426.5:ENST00000508518.5:ENST00000514209.5:ENST00000506815.5:ENST00000457404.6:ENST00000502833.5:ENST00000504028.5:ENST00000502596.5:ENST00000513649.1:ENST00000499847.6:ENST00000502610.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	60	2	2.48789	2.5937799999999998	2.69967	0.0195838	0.00256502	0.109483	0.0466761
chr16	84734593	84734691	6410257	0	+	0.265306	[0,0.28]	chr16	615290	7	INTRON	INTRON	USP10	ENSG00000103194.16	ENST00000562743.5:ENST00000540269.6:ENST00000563892.5:ENST00000562092.1:ENST00000219473.12:ENST00000570191.5:ENST00000563048.5:ENST00000562283.5:ENST00000563386.5:ENST00000569038.5:ENST00000570053.1:ENST00000566512.1:ENST00000563023.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	51	2	2.33055	2.593725	2.8569	0.062338	0.013822	0.175343	0.10247
chr2	134936140	134936240	872411	0	+	0.26	[0,0.28]	chr2	97663	159	INTRON	INTRON	CCNT2	ENSG00000082258.13	ENST00000419781.5:ENST00000446247.5:ENST00000264157.10:ENST00000452839.5:ENST00000295238.10:ENST00000475094.1:ENST00000417175.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	51	2	2.33055	2.593725	2.8569	0.062338	0.013822	0.175343	0.10247
chrX	53408761	53408861	7820050	0	-	0.28	[0,0.28]	chrX	797734	3	SS5_PROX	SS5_PROX:INTRON	SMC1A	ENSG00000072501.19	ENST00000375340.10:ENST00000322213.9:ENST00000675504.1:ENST00000674590.1:ENST00000675065.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	51	2	2.33055	2.593725	2.8569	0.062338	0.013822	0.175343	0.10247
chr1	150550912	150551011	223158	0	+	0.535354	(0.515,0.57]	chr1	25254	4	EXON_LNCRNA	EXON_LNCRNA:INTRON	ADAMTSL4	ENSG00000143382.16	ENST00000369039.9:ENST00000271643.9:ENST00000369041.9:ENST00000483335.1:ENST00000674043.1:ENST00000674058.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	15	187	2	2.25274	2.5937200000000002	2.9347	3.1503e-4	2.22202e-5	0.0159645	0.00384764
chr3	161221355	161221449	1546190	0	+	0.617021	(0.57,1]	chr3	160814	2	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	NMD3	ENSG00000169251.13	ENST00000468606.5:ENST00000460503.5:ENST00000493066.5:ENST00000473909.5:ENST00000472947.5:ENST00000351193.7:ENST00000463518.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	35	2	2.38391	2.59371	2.80351	0.0104374	0.00172505	0.0902296	0.0374701
chr12	6509216	6509316	5069371	0	+	0.31	(0.28,0.32]	chr12	478657	1	SS3_PROX	SS3_PROX:INTRON	NCAPD2	ENSG00000010292.13	ENST00000541399.1:ENST00000539714.5:ENST00000382457.8:ENST00000539084.5:ENST00000315579.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	152	2	2.49889	2.5936399999999997	2.68839	0.00201131	7.47369e-4	0.04086	0.0250515
chr9	130787953	130788053	4214604	0	+	0.36	(0.35,0.378]	chr9	386427	731	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000393293.4	protein_coding	protein_coding	protein_coding	protein_coding	5	85	2	2.20121	2.5936399999999997	2.98607	0.0104157	9.86191e-4	0.085482	0.0288537
chr2	27357707	27357807	717555	0	+	0.52	(0.515,0.57]	chr2	83194	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GTF3C2-AS2	ENSG00000234072.1	ENST00000447070.1:ENST00000453289.1:ENST00000412749.1	lncRNA	lncRNA	lncRNA	lncRNA	5	37	2	1.28871	2.593635	3.89856	0.0731249	0.0280943	0.189597	0.137011
chr7	152280331	152280430	3679725	0	-	0.424242	(0.408,0.44]	chr7	341617	61	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000684262.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	65	2	2.36185	2.59348	2.82511	0.0133164	0.00189528	0.094512	0.0402736
chr2	61318167	61318267	1129001	0	-	0.27	[0,0.28]	chr2	121379	4	SS3_PROX	SS3_PROX:INTRON	USP34	ENSG00000115464.15	ENST00000398571.7	protein_coding	protein_coding	protein_coding	protein_coding	7	149	2	2.09844	2.593455	3.08847	0.0081387	9.38838e-4	0.0766625	0.0280123
chr8	92785675	92785775	3989962	0	-	0.41	(0.408,0.44]	chr8	365353	3	SS5_PROX	SS5_PROX:INTRON	FLJ46284	ENSG00000248858.7	ENST00000504861.2	lncRNA	lncRNA	lncRNA	lncRNA	4	66	2	2.16746	2.59344	3.01942	0.024436	7.74413e-4	0.12011	0.0256083
chr17	77094410	77094506	6678157	0	+	0.489583	(0.476,0.515]	chr17	652310	12	EXON_LNCRNA	EXON_LNCRNA:INTRON	SNHG20:SEC14L1	ENSG00000234912.12:ENSG00000129657.16	ENST00000564414.5:ENST00000568056.5:ENST00000647734.1:ENST00000434411.6:ENST00000649047.1:ENST00000649712.1:ENST00000650557.1:ENST00000647904.1:ENST00000648984.1:ENST00000392476.6:ENST00000589827.5:ENST00000561721.6:ENST00000561633.5:ENST00000564509.5:ENST00000565256.1:ENST00000566583.5:ENST00000648740.1:ENST00000569632.1:ENST00000430767.8	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	19	278	2	2.44911	2.5934049999999997	2.7377	1.95937e-4	1.26896e-5	0.0128173	0.00265616
chr5	54107612	54107712	2618883	0	-	0.3	(0.28,0.32]	chr5	248841	317	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	93	2	1.81786	2.593205	3.36855	0.0142986	0.00305882	0.104025	0.0494118
chr1	744925	745025	357415	0	-	0.56	(0.515,0.57]	chr1	41161	1	SS3_PROX	SS3_PROX:INTRON	ENSG00000230021:ENSG00000228327	ENSG00000230021.10:ENSG00000228327.4	ENST00000634337.2:ENST00000635509.2:ENST00000506640.2	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene:transcribed_unprocessed_pseudogene	processed_transcript	2	32	2	2.35125	2.59313	2.83501	0.0436431	0.0117686	0.162255	0.0894475
chr19	19093591	19093691	7034413	0	+	0.53	(0.515,0.57]	chr19	701229	291	INTRON	INTRON	SLC25A42	ENSG00000181035.14	ENST00000318596.8:ENST00000597661.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	32	2	2.35125	2.59313	2.83501	0.0436431	0.0117686	0.162255	0.0894475
chr22	17746509	17746609	7547957	0	-	0.52	(0.515,0.57]	chr22	771491	21	INTRON	INTRON	BID	ENSG00000015475.19	ENST00000622694.5:ENST00000317361.11:ENST00000614949.4:ENST00000399765.5:ENST00000399767.6:ENST00000342111.9:ENST00000551952.5:ENST00000550946.5:ENST00000473439.5:ENST00000552886.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	32	2	2.35125	2.59313	2.83501	0.0436431	0.0117686	0.162255	0.0894475
chr22	20567932	20568020	7479975	0	+	0.522727	(0.515,0.57]	chr22	763016	8	INTRON	INTRON	MED15	ENSG00000099917.17	ENST00000433831.5:ENST00000292733.11:ENST00000263205.11:ENST00000406969.5:ENST00000382974.6:ENST00000492381.5:ENST00000478831.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	32	2	2.35125	2.59313	2.83501	0.0436431	0.0117686	0.162255	0.0894475
chr7	156887370	156887470	3687960	0	-	0.54	(0.515,0.57]	chr7	342096	501	INTRON	INTRON	LMBR1	ENSG00000105983.23	ENST00000353442.10:ENST00000415428.5:ENST00000454132.5:ENST00000434503.5:ENST00000430278.5:ENST00000434278.5:ENST00000444719.5:ENST00000461469.5:ENST00000414218.1:ENST00000434453.1:ENST00000498034.5:ENST00000433968.5:ENST00000485985.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	32	2	2.35125	2.59313	2.83501	0.0436431	0.0117686	0.162255	0.0894475
chr10	45868503	45868603	4607616	0	-	0.31	(0.28,0.32]	chr10	424444	50	INTRON	INTRON	PARGP1	ENSG00000239883.9	ENST00000440803.7:ENST00000688192.1:ENST00000686367.1:ENST00000693310.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	4	84	2	2.4721	2.593125	2.71415	0.00906617	0.005045	0.0854289	0.0621586
chr3	186970187	186970287	1586573	0	+	0.38	(0.378,0.408]	chr3	164332	59	INTRON	INTRON	ST6GAL1	ENSG00000073849.16	ENST00000676786.1:ENST00000169298.8:ENST00000457772.6:ENST00000455441.5:ENST00000427315.5:ENST00000677292.1:ENST00000458216.5:ENST00000430309.5:ENST00000417392.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	98	2	2.57022	2.59306	2.6159	0.00194844	0.00179058	0.0400465	0.0392749
chr21	37387600	37387700	7406430	0	+	0.41	(0.408,0.44]	chr21	754850	121	INTRON	INTRON	DYRK1A	ENSG00000157540.22	ENST00000646523.1:ENST00000647425.1:ENST00000647188.2:ENST00000647504.1:ENST00000644942.1:ENST00000338785.8:ENST00000643624.1:ENST00000643551.1:ENST00000426672.6:ENST00000398960.7	protein_coding	protein_coding	protein_coding	protein_coding	6	94	2	2.33039	2.5930549999999997	2.85572	0.00598147	4.26582e-4	0.0674604	0.0184578
chr1	51454035	51454135	453694	0	-	0.29	(0.28,0.32]	chr1	54395	55	INTRON	INTRON	EPS15	ENSG00000085832.17	ENST00000371733.8:ENST00000371730.6	protein_coding	protein_coding	protein_coding	protein_coding	6	114	2	2.04207	2.59295	3.14383	0.0121395	5.83228e-4	0.0910127	0.0219397
chr20	49703079	49703179	7353520	0	-	0.56	(0.515,0.57]	chr20	749846	460	INTRON	INTRON	B4GALT5	ENSG00000158470.5	ENST00000371711.4	protein_coding	protein_coding	protein_coding	protein_coding	10	128	2	2.17767	2.592925	3.00818	0.00149192	6.65395e-5	0.0356249	0.00718589
chr17	78223755	78223854	6682270	0	+	0.50505	(0.476,0.515]	chr17	652767	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	BIRC5	ENSG00000089685.15	ENST00000301633.8:ENST00000350051.8:ENST00000374948.6:ENST00000589892.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	25	336	2	1.75405	2.59289	3.43173	0.00166444	7.92066e-7	0.0377945	5.43864e-4
chr6	167014265	167014364	3033519	0	+	0.464646	(0.44,0.476]	chr6	282656	3	INTRON	INTRON	CEP43	ENSG00000213066.13	ENST00000622353.4:ENST00000366847.9:ENST00000349556.4	protein_coding	protein_coding	protein_coding	protein_coding	18	259	2	2.15011	2.5928	3.03549	6.89848e-4	5.35563e-6	0.0240745	0.00160127
chr4	123112787	123112887	2037542	0	+	0.22	[0,0.28]	chr4	202384	106	INTRON	INTRON	SPATA5	ENSG00000145375.9	ENST00000675612.1:ENST00000274008.5	protein_coding	protein_coding	protein_coding	protein_coding	2	53	2	2.36637	2.5927949999999997	2.81922	0.0500615	0.0197411	0.17488	0.109608
chr16	74983104	74983204	6527276	0	-	0.52	(0.515,0.57]	chr16	632164	41	INTRON	INTRON	WDR59	ENSG00000103091.15	ENST00000262144.11:ENST00000616369.4:ENST00000536050.5:ENST00000568323.5:ENST00000562331.5:ENST00000564859.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	43	2	2.43783	2.592775	2.74772	0.0142192	0.00916404	0.103638	0.0812949
chr3	13317390	13317487	1617525	0	-	0.360825	(0.35,0.378]	chr3	167022	13	UTR3	UTR3:EXON_MRNA	NUP210	ENSG00000132182.13	ENST00000254508.7:ENST00000695490.1:ENST00000695489.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	15	240	2	2.21692	2.592775	2.96863	9.34454e-4	1.94601e-5	0.0280498	0.0033954
chr19	55665135	55665234	7101635	0	+	0.50505	(0.476,0.515]	chr19	712540	10	INTRON	INTRON	U2AF2	ENSG00000063244.13	ENST00000450554.6:ENST00000308924.9:ENST00000592874.1:ENST00000590551.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	60	2	2.17347	2.59272	3.01197	0.010447	0.00633162	0.0855102	0.0722266
chr1	147945889	147945988	212967	0	+	0.484848	(0.476,0.515]	chr1	23655	14	INTRON	INTRON	GPR89B	ENSG00000188092.15	ENST00000478307.5:ENST00000488165.5:ENST00000314163.12:ENST00000468618.6:ENST00000491975.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	48	2	2.05154	2.592715	3.13389	0.0336015	0.00405473	0.134145	0.0578376
chr19	52651604	52651701	7206740	0	-	0.443299	(0.44,0.476]	chr19	731395	13	UTR3	UTR3:EXON_MRNA:INTRON	ZNF83:ENSG00000269825	ENSG00000167766.20:ENSG00000269825.2	ENST00000600714.5:ENST00000601257.5:ENST00000594682.6:ENST00000687234.1:ENST00000598536.5:ENST00000595171.5:ENST00000596440.5:ENST00000602232.5:ENST00000598322.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	108	2	1.65316	2.592715	3.53227	0.0192752	5.02287e-5	0.108861	0.00581045
chr14	21256079	21256178	5835033	0	-	0.383838	(0.378,0.408]	chr14	554465	11	INTRON	INTRON	HNRNPC	ENSG00000092199.19	ENST00000336053.10:ENST00000553300.6:ENST00000554969.5:ENST00000556142.5:ENST00000554455.5:ENST00000430246.6:ENST00000553753.5:ENST00000555309.5:ENST00000555914.5:ENST00000557442.5:ENST00000556628.5:ENST00000556513.5:ENST00000555883.5:ENST00000557201.5:ENST00000556897.5:ENST00000420743.6:ENST00000554539.5:ENST00000554383.5:ENST00000555215.5:ENST00000555137.5:ENST00000554891.5:ENST00000556226.5:ENST00000555176.5:ENST00000553614.5:ENST00000557336.1:ENST00000557768.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	127	2	2.46416	2.59265	2.72114	0.00175593	3.34676e-4	0.0376652	0.01628
chr5	180011561	180011661	2781823	0	-	0.47	(0.44,0.476]	chr5	262650	310	INTRON	INTRON	RNF130	ENSG00000113269.14	ENST00000522208.6:ENST00000521389.6:ENST00000261947.4:ENST00000520911.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	48	2	2.21079	2.59265	2.97451	0.0194581	0.00853825	0.119831	0.0780043
chr1	226176094	226176194	646952	0	-	0.58	(0.57,1]	chr1	76667	97	INTRON	INTRON	ACBD3	ENSG00000182827.9	ENST00000366812.6	protein_coding	protein_coding	protein_coding	protein_coding	6	47	2	2.45016	2.592575	2.73499	0.00237434	0.00107789	0.0438057	0.0300133
chr7	123549580	123549679	3631886	0	-	0.474747	(0.44,0.476]	chr7	337500	29	EXON_MRNA	EXON_MRNA:INTRON	NDUFA5	ENSG00000128609.16	ENST00000355749.7:ENST00000471770.5:ENST00000678090.1:ENST00000679163.1:ENST00000676614.1:ENST00000677251.1:ENST00000676730.1:ENST00000677306.1:ENST00000676516.1:ENST00000677391.1:ENST00000677264.1:ENST00000611607.4:ENST00000618945.4:ENST00000492549.6:ENST00000678032.1:ENST00000679052.1:ENST00000467117.6:ENST00000677134.1:ENST00000378795.9:ENST00000470123.2:ENST00000466896.5:ENST00000678251.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	139	2	2.10962	2.5925599999999998	3.0755	0.00161834	1.9693e-4	0.0369252	0.0128602
chr17	56911804	56911904	6799125	0	-	0.47	(0.44,0.476]	chr17	671280	3	SS5_PROX	SS5_PROX:INTRON	TRIM25	ENSG00000121060.19	ENST00000648772.1:ENST00000682766.1:ENST00000316881.9:ENST00000537230.3:ENST00000572021.6:ENST00000574997.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	65	2	2.24189	2.59255	2.94321	0.0193405	0.00111162	0.108861	0.0305384
chr12	112058202	112058299	5414904	0	-	0.42268	(0.408,0.44]	chr12	517177	33	INTRON	INTRON	NAA25	ENSG00000111300.10	ENST00000261745.9:ENST00000552527.5:ENST00000549711.5:ENST00000551858.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	36	2	2.43988	2.59253	2.74518	0.0398236	0.0152229	0.143072	0.108535
chr5	55407563	55407662	2356109	0	+	0.434343	(0.408,0.44]	chr5	227253	16	INTRON	INTRON	MTREX	ENSG00000039123.16	ENST00000230640.10:ENST00000506750.5:ENST00000518955.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	36	2	2.43988	2.59253	2.74518	0.0398236	0.0152229	0.143072	0.108535
chr19	21399133	21399233	7040841	0	+	0.34	(0.32,0.35]	chr19	702018	3	INTRON	INTRON	ZNF493	ENSG00000196268.12	ENST00000596302.5:ENST00000392288.7:ENST00000355504.4:ENST00000594390.5:ENST00000596815.1:ENST00000339914.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	125	2	2.56236	2.592525	2.62269	0.002892	6.6835e-4	0.0476886	0.0234462
chr14	30894746	30894841	5856534	0	-	0.294737	(0.28,0.32]	chr14	556404	11	UTR3	UTR3:EXON_MRNA	STRN3	ENSG00000196792.12	ENST00000355683.9:ENST00000357479.10	protein_coding	protein_coding	protein_coding	protein_coding	5	84	2	1.72287	2.592485	3.4621	0.0286502	0.00218379	0.139456	0.0417893
chr22	41853041	41853141	7526197	0	+	0.48	(0.476,0.515]	chr22	769353	193	INTRON	INTRON	SREBF2	ENSG00000198911.12	ENST00000612482.4:ENST00000361204.9:ENST00000424354.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	66	2	1.68907	2.59247	3.49587	0.0296007	0.00120011	0.142135	0.0315806
chr7	105121305	105121404	3601202	0	-	0.323232	(0.32,0.35]	chr7	336054	29	INTRON	INTRON	SRPK2	ENSG00000135250.17	ENST00000465072.5:ENST00000393651.8:ENST00000357311.7:ENST00000466917.1:ENST00000485455.1:ENST00000477925.5:ENST00000489828.5:ENST00000474770.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	105	2	1.77253	2.592425	3.41232	0.0271031	1.30505e-4	0.123904	0.00983066
chr2	61459966	61460066	1130446	0	-	0.56	(0.515,0.57]	chr2	121499	388	INTRON	INTRON	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000453133.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	42	2	1.8707	2.59229	3.31388	0.0523213	0.00174704	0.160182	0.0386026
chr11	9575178	9575276	4730803	0	+	0.479592	(0.476,0.515]	chr11	438081	6	UTR5	UTR5:EXON_MRNA:INTRON	WEE1	ENSG00000166483.12	ENST00000680141.1:ENST00000450114.7:ENST00000299613.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	48	2	2.13304	2.5922799999999997	3.05152	0.024866	0.0064848	0.132101	0.0699952
chr15	57042560	57042660	6033352	0	+	0.49	(0.476,0.515]	chr15	574669	408	INTRON	INTRON	TCF12	ENSG00000140262.18	ENST00000438423.6:ENST00000267811.9:ENST00000333725.10:ENST00000560190.5:ENST00000559609.5:ENST00000558908.5:ENST00000557843.5:ENST00000557947.5:ENST00000561152.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	48	2	2.13304	2.5922799999999997	3.05152	0.024866	0.0064848	0.132101	0.0699952
chr22	17037942	17038041	7474355	0	+	0.474747	(0.44,0.476]	chr22	762034	2	INTRON	INTRON	CECR7	ENSG00000237438.7	ENST00000441006.5:ENST00000414401.5:ENST00000609932.5:ENST00000609596.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	4	65	2	2.54944	2.59226	2.63508	0.00591346	0.00501007	0.0694038	0.0618077
chr4	165338651	165338714	2079745	0	+	0.365079	(0.35,0.378]	chr4	205578	1	CDS	CDS:EXON_MRNA	MSMO1	ENSG00000052802.13	ENST00000507013.5:ENST00000261507.11:ENST00000393766.6:ENST00000504317.1	protein_coding	protein_coding	protein_coding	protein_coding	15	184	2	2.06012	2.592235	3.12435	7.66038e-4	5.88628e-4	0.025385	0.0220482
chr3	186788052	186788138	1586144	0	+	0.372093	(0.35,0.378]	chr3	164297	3	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	EIF4A2	ENSG00000156976.17	ENST00000426808.5:ENST00000323963.10:ENST00000440191.6:ENST00000425053.5:ENST00000429589.5:ENST00000485101.5:ENST00000443963.5:ENST00000468362.5:ENST00000492144.5:ENST00000497177.1:ENST00000494445.1:ENST00000461021.1:ENST00000496382.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	23	374	2	2.49579	2.59218	2.68857	9.77935e-5	2.21795e-5	0.00890504	0.00367583
chr18	3606935	3607031	6867431	0	+	0.541667	(0.515,0.57]	chr18	680392	5	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	DLGAP1-AS2	ENSG00000262001.2	ENST00000572856.1:ENST00000692104.1:ENST00000687483.1:ENST00000693339.1:ENST00000689896.1:ENST00000691824.1	lncRNA	lncRNA	lncRNA	lncRNA	4	52	2	2.496	2.592165	2.68833	0.0184931	0.00225531	0.108861	0.0436331
chr3	119442856	119442955	1791772	0	-	0.474747	(0.44,0.476]	chr3	179928	44	INTRON	INTRON	TMEM39A	ENSG00000176142.13	ENST00000319172.10:ENST00000438581.6:ENST00000491685.5:ENST00000486159.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	83	2	2.00861	2.592165	3.17572	0.00427037	0.00380912	0.0573912	0.0562562
chr8	123083201	123083297	3850336	0	+	0.552083	(0.515,0.57]	chr8	354670	5	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	TBC1D31	ENSG00000156787.17	ENST00000520368.5:ENST00000519418.5:ENST00000287380.6:ENST00000522420.5:ENST00000327098.9:ENST00000518099.5:ENST00000521676.5:ENST00000524307.5:ENST00000522276.1:ENST00000518684.1:ENST00000521980.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	52	2	2.496	2.592165	2.68833	0.0184931	0.00225531	0.108861	0.0436331
chr1	35180161	35180258	420464	0	-	0.381443	(0.378,0.408]	chr1	50646	23	EXON_LNCRNA	EXON_LNCRNA:INTRON	SFPQ	ENSG00000116560.12	ENST00000470472.5:ENST00000460428.5:ENST00000468598.5:ENST00000485365.1:ENST00000490668.5	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	12	188	2	2.34248	2.59214	2.8418	0.00173667	2.21195e-5	0.0375363	0.0036704
chr22	15788126	15788221	7472924	0	+	0.305263	(0.28,0.32]	chr22	761926	11	EXON_LNCRNA	EXON_LNCRNA:SS3_PROX:INTRON	DUXAP8	ENSG00000206195.11	ENST00000413768.5:ENST00000437781.5:ENST00000383038.7:ENST00000661115.1:ENST00000603308.2:ENST00000447898.5:ENST00000661156.1	lncRNA	lncRNA	lncRNA	lncRNA	4	74	2	1.83303	2.592055	3.35108	0.0370023	0.00221345	0.139194	0.0435144
chr3	185918836	185918936	1886400	0	-	0.45	(0.44,0.476]	chr3	188604	4	SS3_PROX	SS3_PROX:INTRON	TRA2B	ENSG00000136527.19	ENST00000453386.7:ENST00000492417.5:ENST00000463328.5:ENST00000259043.11:ENST00000414862.5:ENST00000487615.5:ENST00000466832.5:ENST00000456380.5:ENST00000382191.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	67	2	1.60176	2.591975	3.58219	0.0389597	8.57842e-4	0.160861	0.0267428
chr4	24530604	24530697	2118457	0	-	0.301075	(0.28,0.32]	chr4	209191	10	EXON_LNCRNA	EXON_LNCRNA:INTRON	DHX15	ENSG00000109606.13	ENST00000510645.5:ENST00000336812.5:ENST00000508032.5:ENST00000512903.1:ENST00000513036.5:ENST00000508368.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	120	2	2.23223	2.5919749999999997	2.95172	0.0109124	3.7205e-4	0.0873034	0.0173669
chr11	47529565	47529665	4950167	0	-	0.54	(0.515,0.57]	chr11	464246	49	INTRON	INTRON	CELF1	ENSG00000149187.19	ENST00000310513.10:ENST00000687097.1:ENST00000531165.5:ENST00000530151.5:ENST00000525841.5:ENST00000526419.1	protein_coding	protein_coding	protein_coding	protein_coding	5	67	2	2.40178	2.59193	2.78208	0.00382306	0.00209264	0.0542786	0.0424943
chr8	37867652	37867751	3935620	0	-	0.444444	(0.44,0.476]	chr8	360553	42	INTRON	INTRON	RAB11FIP1	ENSG00000156675.16	ENST00000330843.9:ENST00000287263.8:ENST00000522727.5:ENST00000523182.5:ENST00000522774.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	11	159	2	2.45439	2.591895	2.7294	4.49184e-4	2.40491e-4	0.0196044	0.0136674
chr7	2277799	2277899	3467317	0	-	0.57	(0.515,0.57]	chr7	324225	3	SS5_PROX	SS5_PROX:INTRON	SNX8	ENSG00000106266.11	ENST00000222990.8:ENST00000435060.5:ENST00000457286.5:ENST00000435336.5:ENST00000494722.1:ENST00000447136.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	42	2	2.27238	2.5918900000000002	2.9114	0.0161808	0.00826019	0.101453	0.0813266
chr6	110877020	110877120	2938966	0	+	0.33	(0.32,0.35]	chr6	276765	10	INTRON	INTRON	AMD1	ENSG00000123505.19	ENST00000451850.6:ENST00000675380.1:ENST00000368882.8:ENST00000672937.2:ENST00000368885.8:ENST00000368877.9:ENST00000368876.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	67	2	2.02133	2.59185	3.16237	0.017146	0.00550276	0.111072	0.0648867
chr3	152290924	152291024	1535204	0	+	0.34	(0.32,0.35]	chr3	159981	208	INTRON	INTRON	MBNL1	ENSG00000152601.18	ENST00000477171.1:ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000461436.1:ENST00000495875.6:ENST00000324210.10:ENST00000493459.5:ENST00000459747.1:ENST00000460591.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	88	2	2.10434	2.591845	3.07935	0.00724137	0.00423324	0.0729826	0.0595557
chr16	88929646	88929746	6540822	0	-	0.56	(0.515,0.57]	chr16	634096	273	INTRON	INTRON	CBFA2T3	ENSG00000129993.15	ENST00000268679.9:ENST00000327483.9:ENST00000569464.5:ENST00000569443.5:ENST00000563640.1:ENST00000564416.1:ENST00000570046.1	protein_coding	protein_coding	protein_coding	protein_coding	2	31	2	2.43589	2.591805	2.74772	0.0370871	0.0142192	0.139194	0.103638
chr17	31160091	31160191	6591786	0	+	0.52	(0.515,0.57]	chr17	641069	6	INTRON	INTRON	NF1	ENSG00000196712.20	ENST00000696138.1:ENST00000356175.7:ENST00000487476.5:ENST00000691014.1:ENST00000358273.9:ENST00000431387.8:ENST00000579081.5:ENST00000489712.6:ENST00000495910.6:ENST00000490416.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	31	2	2.43589	2.591805	2.74772	0.0370871	0.0142192	0.139194	0.103638
chr17	47659451	47659548	6622674	0	+	0.525773	(0.515,0.57]	chr17	646019	4	INTRON	INTRON	KPNB1	ENSG00000108424.11	ENST00000535458.6:ENST00000583648.6:ENST00000290158.9:ENST00000577918.5:ENST00000540627.5:ENST00000582097.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	31	2	2.43589	2.591805	2.74772	0.0370871	0.0142192	0.139194	0.103638
chr20	50089535	50089634	7353717	0	-	0.545455	(0.515,0.57]	chr20	749863	49	INTRON	INTRON	UBE2V1	ENSG00000244687.13	ENST00000340309.7:ENST00000371677.7:ENST00000415862.6:ENST00000557021.5:ENST00000617119.4:ENST00000625172.3:ENST00000396059.7:ENST00000371674.8:ENST00000371657.9:ENST00000483534.5:ENST00000492371.6:ENST00000486653.5:ENST00000490555.1:ENST00000493090.5:ENST00000467839.5:ENST00000472923.5:ENST00000432266.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	31	2	2.43589	2.591805	2.74772	0.0370871	0.0142192	0.139194	0.103638
chr5	73561688	73561788	2641817	0	-	0.53	(0.515,0.57]	chr5	251074	4	SS3_PROX	SS3_PROX:INTRON	ANKRA2	ENSG00000164331.10	ENST00000296785.8:ENST00000504641.1:ENST00000515804.1:ENST00000506130.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	31	2	2.43589	2.591805	2.74772	0.0370871	0.0142192	0.139194	0.103638
chr8	42522990	42523090	3942392	0	-	0.53	(0.515,0.57]	chr8	361320	205	INTRON	INTRON	SLC20A2	ENSG00000168575.10	ENST00000342228.7:ENST00000520179.5:ENST00000524211.1:ENST00000518717.1:ENST00000518384.1:ENST00000524237.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	31	2	2.43589	2.591805	2.74772	0.0370871	0.0142192	0.139194	0.103638
chr2	61456772	61456871	1130414	0	-	0.414141	(0.408,0.44]	chr2	121499	356	INTRON	INTRON	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000453133.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	58	2	1.9831	2.59172	3.20034	0.018491	0.00398025	0.116694	0.0549214
chr1	6830898	6830997	6099	0	+	0.545455	(0.515,0.57]	chr1	1143	53	INTRON	INTRON	CAMTA1	ENSG00000171735.19	ENST00000303635.12:ENST00000490738.5:ENST00000476163.5:ENST00000473578.5:ENST00000557126.5:ENST00000467404.6:ENST00000461311.1:ENST00000486138.1:ENST00000482934.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	31	2	2.52504	2.59169	2.65834	0.029342	0.0187418	0.128055	0.117523
chr13	113211085	113211184	5548302	0	+	0.535354	(0.515,0.57]	chr13	530119	6	INTRON	INTRON	CUL4A	ENSG00000139842.15	ENST00000375441.7:ENST00000326335.8:ENST00000451881.5:ENST00000617546.4:ENST00000488558.2:ENST00000375440.9:ENST00000474116.5:ENST00000494985.5:ENST00000463426.5:ENST00000498562.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	31	2	2.52504	2.59169	2.65834	0.029342	0.0187418	0.128055	0.117523
chr14	102712958	102713054	5823745	0	+	0.520833	(0.515,0.57]	chr14	552522	16	INTRON	INTRON	RCOR1	ENSG00000089902.10	ENST00000262241.7:ENST00000558495.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	31	2	2.52504	2.59169	2.65834	0.029342	0.0187418	0.128055	0.117523
chr17	32814254	32814354	6756485	0	-	0.55	(0.515,0.57]	chr17	664073	196	INTRON	INTRON	MYO1D	ENSG00000176658.17	ENST00000318217.10:ENST00000394649.8:ENST00000579584.5:ENST00000583621.1	protein_coding	protein_coding	protein_coding	protein_coding	2	31	2	2.52504	2.59169	2.65834	0.029342	0.0187418	0.128055	0.117523
chr19	1430957	1431053	6995340	0	+	0.552083	(0.515,0.57]	chr19	693220	2	INTRON	INTRON	DAZAP1	ENSG00000071626.17	ENST00000336761.10:ENST00000233078.9:ENST00000592522.5:ENST00000587079.5:ENST00000592453.2:ENST00000589484.5:ENST00000585485.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	31	2	2.52504	2.59169	2.65834	0.029342	0.0187418	0.128055	0.117523
chr19	4104322	4104422	7119342	0	-	0.55	(0.515,0.57]	chr19	716167	3	SS5_PROX	SS5_PROX:INTRON	MAP2K2	ENSG00000126934.15	ENST00000262948.10:ENST00000394867.9:ENST00000687128.1:ENST00000602167.5:ENST00000599345.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	31	2	2.52504	2.59169	2.65834	0.029342	0.0187418	0.128055	0.117523
chr19	10147412	10147509	7134359	0	-	0.546392	(0.515,0.57]	chr19	719117	5	INTRON	INTRON	DNMT1	ENSG00000130816.17	ENST00000586667.2:ENST00000340748.8:ENST00000359526.9:ENST00000592705.5:ENST00000679103.1:ENST00000677634.1:ENST00000676820.1:ENST00000677250.1:ENST00000677013.1:ENST00000677685.1:ENST00000677616.1:ENST00000676604.1:ENST00000678024.1:ENST00000676868.1:ENST00000677783.1:ENST00000678694.1:ENST00000679100.1:ENST00000678647.1:ENST00000676610.1:ENST00000678804.1:ENST00000679313.1:ENST00000677946.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	31	2	2.52504	2.59169	2.65834	0.029342	0.0187418	0.128055	0.117523
chr3	14444454	14444545	1369817	0	+	0.527473	(0.515,0.57]	chr3	144331	2	SS3_PROX	SS3_PROX:INTRON	SLC6A6	ENSG00000131389.18	ENST00000613060.4:ENST00000618278.4:ENST00000610642.4:ENST00000649500.1:ENST00000622186.5:ENST00000621751.4:ENST00000622176.4:ENST00000615188.1:ENST00000452775.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	31	2	2.52504	2.59169	2.65834	0.029342	0.0187418	0.128055	0.117523
chr6	157869324	157869423	3016225	0	+	0.535354	(0.515,0.57]	chr6	281360	13	INTRON	INTRON	SNX9	ENSG00000130340.17	ENST00000614703.4:ENST00000614800.4:ENST00000680863.1:ENST00000679814.1:ENST00000680464.1:ENST00000681186.1:ENST00000679732.1:ENST00000681183.1:ENST00000681534.1:ENST00000681651.1:ENST00000680089.1:ENST00000680078.1:ENST00000680974.1:ENST00000680095.1:ENST00000680015.1:ENST00000681138.1:ENST00000392185.8:ENST00000679790.1:ENST00000680495.1:ENST00000679691.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	31	2	2.52504	2.59169	2.65834	0.029342	0.0187418	0.128055	0.117523
chr8	140746449	140746526	4077490	0	-	0.441558	(0.44,0.476]	chr8	370410	1	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	PTK2	ENSG00000169398.20	ENST00000696786.1:ENST00000522684.5:ENST00000395218.3:ENST00000519654.5:ENST00000521059.5:ENST00000517887.5:ENST00000519465.5:ENST00000519993.5:ENST00000340930.7:ENST00000523539.5:ENST00000519419.5:ENST00000524202.5:ENST00000521986.5:ENST00000521250.5:ENST00000521981.5:ENST00000521029.5:ENST00000520151.5:ENST00000523670.5:ENST00000519024.5:ENST00000523746.5:ENST00000510126.2:ENST00000523474.5:ENST00000519899.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	58	2	1.87325	2.59168	3.31011	0.0265709	0.00259023	0.134088	0.0452934
chr22	21783863	21783962	7560542	0	-	0.454545	(0.44,0.476]	chr22	773360	105	INTRON	INTRON	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	8	86	2	1.53197	2.59166	3.65135	0.0211313	6.34922e-4	0.122929	0.023163
chr10	74050529	74050628	4455027	0	+	0.30303	(0.28,0.32]	chr10	411397	70	INTRON	INTRON	VCL	ENSG00000035403.18	ENST00000623461.3:ENST00000372755.7:ENST00000624354.3:ENST00000211998.10:ENST00000478896.2:ENST00000461383.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	83	2	2.55521	2.5916300000000003	2.62805	0.00681001	0.0067419	0.0739405	0.0711884
chr9	107301634	107301734	4183562	0	+	0.45	(0.44,0.476]	chr9	381550	2	SS3_PROX	SS3_PROX:INTRON	RAD23B	ENSG00000119318.13	ENST00000419616.5:ENST00000358015.8:ENST00000416373.6:ENST00000442587.1	protein_coding	protein_coding	protein_coding	protein_coding	7	102	2	2.54812	2.5915999999999997	2.63508	0.00501007	4.00243e-4	0.0618077	0.0179738
chr15	75874258	75874353	6065373	0	+	0.389474	(0.378,0.408]	chr15	577561	3	INTRON	INTRON	UBE2Q2	ENSG00000140367.12	ENST00000569423.5:ENST00000267938.9:ENST00000561723.5:ENST00000561851.5:ENST00000426727.6:ENST00000567921.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	60	2	2.22859	2.59159	2.95459	0.00957623	0.00763308	0.0820838	0.0777238
chr8	29060886	29060986	3726582	0	+	0.44	(0.408,0.44]	chr8	346339	36	INTRON	INTRON	HMBOX1	ENSG00000147421.18	ENST00000522468.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	8	119	2	2.43558	2.5915850000000002	2.74759	0.00102152	7.35362e-4	0.029231300000000002	0.0247453
chr1	155513328	155513428	562397	0	-	0.49	(0.476,0.515]	chr1	67101	305	INTRON	INTRON	ASH1L	ENSG00000116539.14	ENST00000676814.1:ENST00000392403.8:ENST00000368346.7:ENST00000677213.1:ENST00000678117.1:ENST00000679097.1:ENST00000679333.1:ENST00000677042.1:ENST00000678699.1:ENST00000677825.1:ENST00000679133.1:ENST00000548830.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	48	2	1.99197	2.59158	3.19119	0.039572	0.00325748	0.143072	0.0524329
chr3	47474722	47474822	1682847	0	-	0.52	(0.515,0.57]	chr3	171885	20	INTRON	INTRON	SCAP	ENSG00000114650.21	ENST00000265565.10:ENST00000441517.6:ENST00000320017.10:ENST00000416208.5:ENST00000416847.5:ENST00000448217.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	102	2	2.32131	2.5915749999999997	2.86184	0.00139342	3.55958e-4	0.0340865	0.0168968
chr4	75645329	75645429	2161802	0	-	0.38	(0.378,0.408]	chr4	212947	36	UTR3	UTR3:EXON_MRNA	G3BP2	ENSG00000138757.15	ENST00000676666.1:ENST00000678062.1:ENST00000678100.1:ENST00000678122.1:ENST00000677265.1:ENST00000678971.1:ENST00000679281.1:ENST00000677333.1:ENST00000676470.1:ENST00000677620.1:ENST00000677606.1:ENST00000678798.1:ENST00000677583.1:ENST00000678447.1:ENST00000678875.1:ENST00000678244.1:ENST00000676974.1:ENST00000677003.1:ENST00000677889.1:ENST00000678329.1:ENST00000676584.1:ENST00000678552.1:ENST00000677192.1:ENST00000677727.1:ENST00000678265.1:ENST00000676839.1:ENST00000677876.1:ENST00000678123.1:ENST00000678578.1:ENST00000677171.1:ENST00000679329.1:ENST00000677794.1:ENST00000395719.7:ENST00000359707.9:ENST00000677060.1:ENST00000679294.1:ENST00000677201.1:ENST00000677952.1:ENST00000677125.1:ENST00000678273.1:ENST00000357854.7:ENST00000677162.1:ENST00000677566.1:ENST00000677970.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	172	2	1.95483	2.59153	3.22823	0.00166648	1.00572e-4	0.0378391	0.00905982
chr2	177242751	177242851	1275627	0	-	0.4	(0.378,0.408]	chr2	134708	81	INTRON	INTRON	NFE2L2	ENSG00000116044.16	ENST00000397063.8:ENST00000464747.5:ENST00000397062.8:ENST00000446151.6:ENST00000449627.1:ENST00000448782.5:ENST00000430047.1:ENST00000586532.5:ENST00000421929.5:ENST00000423513.5:ENST00000588123.1:ENST00000477534.1:ENST00000462023.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	67	2	2.43657	2.5915150000000002	2.74646	0.0106733	0.00271684	0.0861859	0.0481064
chr22	20529944	20530043	7479574	0	+	0.484848	(0.476,0.515]	chr22	762964	52	INTRON	INTRON	MED15	ENSG00000099917.17	ENST00000445987.5:ENST00000444094.5:ENST00000414658.5:ENST00000486656.5:ENST00000433831.5:ENST00000432052.5:ENST00000292733.11:ENST00000263205.11:ENST00000477824.5:ENST00000406969.5:ENST00000382974.6:ENST00000441501.5:ENST00000438962.1:ENST00000445189.5:ENST00000451058.5:ENST00000473028.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	48	2	2.10874	2.59148	3.07422	0.0285608	0.00506023	0.12666	0.0646039
chrX	73851923	73852023	7838043	0	-	0.35	(0.32,0.35]	chrX	799611	146	EXON_LNCRNA	EXON_LNCRNA	XIST	ENSG00000229807.13	ENST00000429829.6	lncRNA	lncRNA	lncRNA	lncRNA	40	692	2	2.19684	2.59143	2.98602	3.36447e-4	5.42864e-7	0.0170514	3.96157e-4
chr21	44872353	44872453	7469115	0	-	0.48	(0.476,0.515]	chr21	761252	1	SS5_PROX	SS5_PROX:INTRON	PTTG1IP	ENSG00000183255.12	ENST00000397887.7:ENST00000445724.3:ENST00000330938.8:ENST00000494690.5:ENST00000480234.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	119	2	2.56291	2.59139	2.61987	0.00222582	2.71328e-4	0.0421176	0.014624
chr1	173901356	173901456	257080	0	+	0.34	(0.32,0.35]	chr1	30716	154	UTR3	UTR3:EXON_MRNA	ZBTB37	ENSG00000185278.16	ENST00000367701.10	protein_coding	protein_coding	protein_coding	protein_coding	4	69	2	1.72898	2.5912949999999997	3.45361	0.0425433	0.00193809	0.161951	0.0399255
chr7	107484941	107485041	3612235	0	-	0.4	(0.378,0.408]	chr7	336698	41	INTRON	INTRON	COG5	ENSG00000164597.15	ENST00000297135.9:ENST00000347053.8:ENST00000393603.7:ENST00000475638.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	50	2	2.51464	2.591245	2.66785	0.0224639	0.00684341	0.11692	0.0748032
chr7	135632766	135632866	3429105	0	+	0.35	(0.32,0.35]	chr7	319814	19	INTRON	INTRON	NUP205	ENSG00000155561.15	ENST00000285968.11:ENST00000607647.5:ENST00000477620.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	78	2	1.42542	2.59118	3.75694	0.0718205	3.37248e-4	0.187046	0.0163178
chr19	15298545	15298645	7147066	0	-	0.47	(0.44,0.476]	chr19	721965	182	INTRON	INTRON	BRD4	ENSG00000141867.19	ENST00000679869.1:ENST00000360016.9:ENST00000594841.5:ENST00000597315.5:ENST00000601941.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	93	2	2.38636	2.59117	2.79598	0.0047296	5.82325e-4	0.0600445	0.0219289
chr19	578697	578773	6991906	0	+	0.526316	(0.515,0.57]	chr19	692153	2	INTRON	INTRON	BSG	ENSG00000172270.22	ENST00000545507.6:ENST00000346916.9:ENST00000680065.1:ENST00000679472.1:ENST00000680552.1:ENST00000613627.5:ENST00000576925.4:ENST00000573216.5:ENST00000572899.6:ENST00000333511.9:ENST00000353555.9:ENST00000680326.1:ENST00000618006.4:ENST00000614867.2:ENST00000618112.4:ENST00000573784.6:ENST00000574970.2:ENST00000576984.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	13	164	2	2.31954	2.59116	2.86278	5.60625e-4	2.32879e-5	0.0219002	0.00378116
chr11	120438258	120438352	4877232	0	+	0.287234	(0.28,0.32]	chr11	455862	5	INTRON	INTRON	ARHGEF12	ENSG00000196914.9	ENST00000397843.7:ENST00000356641.7:ENST00000532993.5:ENST00000529970.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	85	2	2.17818	2.591065	3.00395	0.0101329	0.00555379	0.0850389	0.0675078
chr1	219198617	219198692	318627	0	+	0.293333	(0.28,0.32]	chr1	36458	2	EXON_LNCRNA	EXON_LNCRNA:INTRON	LYPLAL1	ENSG00000143353.12	ENST00000460522.5:ENST00000366927.3:ENST00000366928.10:ENST00000477938.5:ENST00000463964.5:ENST00000483635.5:ENST00000474379.5:ENST00000469590.5:ENST00000478794.5:ENST00000475724.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	61	2	2.55521	2.591035	2.62686	0.0289217	0.0067419	0.1274	0.0739405
chr3	72424906	72425006	1745704	0	-	0.29	(0.28,0.32]	chr3	177368	444	INTRON	INTRON	RYBP	ENSG00000163602.12	ENST00000477973.5	protein_coding	protein_coding	protein_coding	protein_coding	3	61	2	2.55521	2.591035	2.62686	0.0289217	0.0067419	0.1274	0.0739405
chr1	25356792	25356853	47887	0	+	0.344262	(0.32,0.35]	chr1	5907	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TMEM50A	ENSG00000183726.11	ENST00000498135.5:ENST00000491936.5:ENST00000480937.5:ENST00000374358.5:ENST00000468704.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	104	2	2.18299	2.590985	2.99898	0.00505063	0.00148392	0.0646039	0.034977
chr9	130876733	130876831	4215497	0	+	0.469388	(0.44,0.476]	chr9	386466	13	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000318560.6	protein_coding	protein_coding	protein_coding	protein_coding	3	49	2	2.00609	2.5909050000000002	3.17572	0.0360127	0.00427037	0.152355	0.0573912
chr7	33055875	33055975	3516365	0	-	0.45	(0.44,0.476]	chr7	327910	99	INTRON	INTRON	NT5C3A	ENSG00000122643.23	ENST00000456458.5:ENST00000610140.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	49	2	2.29126	2.590865	2.89047	0.0165638	0.00955699	0.102621	0.0863913
chr9	136826	136925	4226862	0	-	0.464646	(0.44,0.476]	chr9	388550	14	INTRON	INTRON	CBWD1	ENSG00000172785.19	ENST00000356521.9:ENST00000377400.8:ENST00000475990.5:ENST00000619157.4:ENST00000314367.14:ENST00000612045.4:ENST00000475411.5:ENST00000611457.4:ENST00000465014.6:ENST00000613508.4:ENST00000382447.8:ENST00000487575.6:ENST00000495302.5:ENST00000462513.5:ENST00000616944.4:ENST00000613355.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	49	2	2.29126	2.590865	2.89047	0.0165638	0.00955699	0.102621	0.0863913
chr6	17970987	17971086	3068387	0	-	0.292929	(0.28,0.32]	chr6	285105	192	INTRON	INTRON	KIF13A	ENSG00000137177.20	ENST00000378814.9:ENST00000259711.11:ENST00000378826.6:ENST00000378843.6:ENST00000636847.1:ENST00000507576.1:ENST00000505588.1:ENST00000502704.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	61	2	1.91611	2.59081	3.26551	0.0539102	0.0030714	0.164153	0.0509893
chr20	38930410	38930510	7272463	0	+	0.39	(0.378,0.408]	chr20	739054	31	INTRON	INTRON	FAM83D	ENSG00000101447.15	ENST00000619304.4:ENST00000619850.2	protein_coding	protein_coding	protein_coding	protein_coding	5	73	2	2.01071	2.5907999999999998	3.17089	0.0111045	0.00357279	0.0876025	0.0548435
chr9	37121350	37121424	4117662	0	+	0.405405	(0.378,0.408]	chr9	375359	2	SS3_PROX	SS3_PROX:SS5_PROX:INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000322831.6:ENST00000461038.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	81	2	2.27309	2.59072	2.90835	0.00769587	0.00133715	0.0754631	0.0335955
chr19	10257821	10257921	7012353	0	+	0.44	(0.408,0.44]	chr19	696498	2	SS3_PROX	SS3_PROX:INTRON	MRPL4	ENSG00000105364.14	ENST00000592514.5:ENST00000591054.5:ENST00000307422.9:ENST00000590150.5:ENST00000590669.5:ENST00000253099.11:ENST00000393733.6:ENST00000588502.5:ENST00000590702.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	124	2	2.47553	2.590695	2.70586	9.14702e-4	8.63273e-4	0.027804	0.0268312
chr1	113099540	113099625	188369	0	+	0.329412	(0.32,0.35]	chr1	20896	4	INTRON	INTRON	LRIG2	ENSG00000198799.12	ENST00000361127.6:ENST00000466069.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	57	2	2.51061	2.590645	2.67068	0.0364463	0.00406276	0.138959	0.0578984
chr12	132092415	132092515	5250268	0	+	0.33	(0.32,0.35]	chr12	499298	5	INTRON	INTRON	EP400P1	ENSG00000185684.16	ENST00000407361.8:ENST00000446190.5:ENST00000690966.1:ENST00000689047.1:ENST00000454179.7:ENST00000689533.1:ENST00000688036.1:ENST00000688136.1:ENST00000488030.5:ENST00000389560.6:ENST00000689403.1:ENST00000443539.6:ENST00000392352.5:ENST00000539205.5:ENST00000332441.7	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	3	57	2	2.51061	2.590645	2.67068	0.0364463	0.00406276	0.138959	0.0578984
chr6	163417977	163418076	3031735	0	+	0.323232	(0.32,0.35]	chr6	282555	11	INTRON	INTRON	QKI	ENSG00000112531.17	ENST00000361758.8:ENST00000453779.6:ENST00000275262.11:ENST00000392127.6:ENST00000361752.8:ENST00000361195.6:ENST00000424802.7:ENST00000545607.5:ENST00000544436.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	57	2	2.51061	2.590645	2.67068	0.0364463	0.00406276	0.138959	0.0578984
chr10	74052621	74052721	4455048	0	+	0.42	(0.408,0.44]	chr10	411397	91	INTRON	INTRON	VCL	ENSG00000035403.18	ENST00000623461.3:ENST00000372755.7:ENST00000624354.3:ENST00000211998.10:ENST00000478896.2:ENST00000461383.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	36	2	2.36073	2.5905750000000003	2.82042	0.0481658	0.0120121	0.153019	0.0962115
chr21	44041615	44041715	7415327	0	+	0.43	(0.408,0.44]	chr21	755795	33	INTRON	INTRON	TRAPPC10	ENSG00000160218.13	ENST00000291574.9:ENST00000380221.7:ENST00000422875.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	36	2	2.36073	2.5905750000000003	2.82042	0.0481658	0.0120121	0.153019	0.0962115
chr22	37645910	37646010	7510350	0	+	0.43	(0.408,0.44]	chr22	766812	4	SS5_PROX	SS5_PROX:INTRON	SH3BP1	ENSG00000100092.24	ENST00000417536.5:ENST00000649765.2:ENST00000644149.1:ENST00000469947.5:ENST00000495174.5:ENST00000471650.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	36	2	2.36073	2.5905750000000003	2.82042	0.0481658	0.0120121	0.153019	0.0962115
chr3	197880912	197881010	1598645	0	+	0.418367	(0.408,0.44]	chr3	165685	3	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	LRCH3	ENSG00000186001.14	ENST00000438796.6:ENST00000428136.2:ENST00000425562.7:ENST00000441090.6:ENST00000414675.6:ENST00000433298.5:ENST00000476664.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	36	2	2.36073	2.5905750000000003	2.82042	0.0481658	0.0120121	0.153019	0.0962115
chr1	20775517	20775585	389746	0	-	0.323529	(0.32,0.35]	chr1	46562	2	EXON_LNCRNA	EXON_LNCRNA:INTRON	HP1BP3	ENSG00000127483.19	ENST00000438032.6:ENST00000312239.10:ENST00000419948.5:ENST00000424732.5:ENST00000417710.5:ENST00000487117.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	195	2	2.09557	2.59057	3.08557	9.47632e-4	2.85124e-4	0.0282062	0.0154954
chr22	21783563	21783663	7560539	0	-	0.54	(0.515,0.57]	chr22	773360	102	INTRON	INTRON	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	6	77	2	2.54852	2.59051	2.6325	0.00439001	7.08868e-4	0.0585064	0.0242289
chr20	49080491	49080589	7284141	0	+	0.520408	(0.515,0.57]	chr20	740884	15	INTRON	INTRON	CSE1L	ENSG00000124207.17	ENST00000396192.7:ENST00000262982.3	protein_coding	protein_coding	protein_coding	protein_coding	9	101	2	1.9086	2.590505	3.27241	0.00449259	1.80226e-4	0.0593914	0.0116696
chr2	61359161	61359261	1129427	0	-	0.32	(0.28,0.32]	chr2	121448	81	INTRON	INTRON	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000453133.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	117	2	2.47203	2.5904550000000004	2.70888	0.0114089	4.99158e-4	0.0886611	0.020217099999999998
chr20	32154602	32154702	7254772	0	+	0.52	(0.515,0.57]	chr20	736905	1	SS3_PROX	SS3_PROX:INTRON	TM9SF4	ENSG00000101337.16	ENST00000398022.7:ENST00000217315.9	protein_coding	protein_coding	protein_coding	protein_coding	3	42	2	2.03361	2.590455	3.1473	0.0325854	0.00397184	0.145164	0.0549214
chr14	21247851	21247950	5834950	0	-	0.59596	(0.57,1]	chr14	554459	110	INTRON	INTRON	HNRNPC	ENSG00000092199.19	ENST00000336053.10:ENST00000553300.6:ENST00000554969.5:ENST00000556142.5:ENST00000554455.5:ENST00000430246.6:ENST00000553753.5:ENST00000555309.5:ENST00000555914.5:ENST00000557442.5:ENST00000556628.5:ENST00000556513.5:ENST00000555883.5:ENST00000557201.5:ENST00000556897.5:ENST00000420743.6:ENST00000554539.5:ENST00000554383.5:ENST00000555215.5:ENST00000555137.5:ENST00000554891.5:ENST00000556226.5:ENST00000555176.5:ENST00000553614.5:ENST00000557336.1:ENST00000557768.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	63	2	2.53502	2.5904499999999997	2.64588	6.60462e-4	3.49647e-4	0.023462	0.0166791
chr12	116081674	116081774	5423583	0	-	0.43	(0.408,0.44]	chr12	518245	587	INTRON	INTRON	MED13L	ENSG00000123066.9	ENST00000281928.9:ENST00000650226.1:ENST00000648737.1:ENST00000548743.2:ENST00000647567.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	36	2	2.51492	2.5903549999999997	2.66579	0.0329839	0.019342	0.133816	0.119831
chr15	22863058	22863156	5976771	0	+	0.438776	(0.408,0.44]	chr15	568434	19	INTRON	INTRON	NIPA2	ENSG00000140157.16	ENST00000398014.7:ENST00000359727.8:ENST00000674173.1:ENST00000337451.8:ENST00000674289.1:ENST00000674477.1:ENST00000398013.7:ENST00000674330.1:ENST00000539711.2:ENST00000674215.1:ENST00000674227.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	36	2	2.51492	2.5903549999999997	2.66579	0.0329839	0.019342	0.133816	0.119831
chr15	27131086	27131186	5983754	0	+	0.41	(0.408,0.44]	chr15	569164	1039	INTRON	INTRON	GABRG3	ENSG00000182256.13	ENST00000615808.5:ENST00000555083.5	protein_coding	protein_coding	protein_coding	protein_coding	2	36	2	2.51492	2.5903549999999997	2.66579	0.0329839	0.019342	0.133816	0.119831
chr16	74957786	74957882	6527016	0	-	0.427083	(0.408,0.44]	chr16	632142	8	INTRON	INTRON	WDR59	ENSG00000103091.15	ENST00000262144.11:ENST00000616369.4:ENST00000536050.5:ENST00000568462.5:ENST00000568323.5:ENST00000563111.2:ENST00000562331.5:ENST00000564859.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	36	2	2.51492	2.5903549999999997	2.66579	0.0329839	0.019342	0.133816	0.119831
chr16	75019266	75019366	6389621	0	+	0.43	(0.408,0.44]	chr16	614482	165	INTRON	INTRON	ZNRF1	ENSG00000186187.12	ENST00000335325.9:ENST00000320619.10:ENST00000567962.5:ENST00000566250.5:ENST00000564320.1:ENST00000568511.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	36	2	2.51492	2.5903549999999997	2.66579	0.0329839	0.019342	0.133816	0.119831
chr19	47638983	47639083	7086061	0	+	0.42	(0.408,0.44]	chr19	709045	310	INTRON	INTRON	ENSG00000268746	ENSG00000268746.1	ENST00000599924.1	lncRNA	lncRNA	lncRNA	lncRNA	2	36	2	2.51492	2.5903549999999997	2.66579	0.0329839	0.019342	0.133816	0.119831
chr4	128848093	128848189	2044655	0	+	0.4375	(0.408,0.44]	chr4	203016	12	INTRON	INTRON	JADE1	ENSG00000077684.16	ENST00000226319.11:ENST00000511647.5:ENST00000452328.6:ENST00000504089.5:ENST00000512960.5:ENST00000503785.5:ENST00000610919.4:ENST00000510308.5:ENST00000511925.5:ENST00000413543.6:ENST00000611140.4:ENST00000507833.5:ENST00000508997.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	36	2	2.51492	2.5903549999999997	2.66579	0.0329839	0.019342	0.133816	0.119831
chr7	137964275	137964375	3655363	0	-	0.44	(0.408,0.44]	chr7	339370	305	INTRON	INTRON	CREB3L2	ENSG00000182158.16	ENST00000330387.11:ENST00000456390.5:ENST00000452463.5	protein_coding	protein_coding	protein_coding	protein_coding	2	36	2	2.51492	2.5903549999999997	2.66579	0.0329839	0.019342	0.133816	0.119831
chr7	140095711	140095811	3659375	0	-	0.44	(0.408,0.44]	chr7	339657	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	KDM7A	ENSG00000006459.11	ENST00000397560.7:ENST00000472616.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	36	2	2.51492	2.5903549999999997	2.66579	0.0329839	0.019342	0.133816	0.119831
chrX	44890886	44890986	7648779	0	+	0.44	(0.408,0.44]	chrX	782726	165	INTRON	INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000675440.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000621147.5:ENST00000475233.1:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	36	2	2.51492	2.5903549999999997	2.66579	0.0329839	0.019342	0.133816	0.119831
chr7	23383414	23383514	3502790	0	-	0.38	(0.378,0.408]	chr7	326877	204	INTRON	INTRON	IGF2BP3	ENSG00000136231.14	ENST00000258729.8:ENST00000421467.6:ENST00000468263.5:ENST00000492771.5:ENST00000479504.5:ENST00000466809.6:ENST00000491719.5:ENST00000465058.5:ENST00000469723.5:ENST00000474105.5:ENST00000476938.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	67	2	2.35103	2.59035	2.82967	0.014158	0.00189968	0.0959618	0.0402736
chr11	85999851	85999948	5014132	0	-	0.402062	(0.378,0.408]	chr11	472953	26	INTRON	INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000630913.2:ENST00000529760.5:ENST00000528398.5:ENST00000356360.9:ENST00000529016.5:ENST00000530542.1	protein_coding	protein_coding	protein_coding	protein_coding	19	288	2	2.53318	2.590325	2.64747	2.0273e-4	1.86998e-5	0.0129814	0.00330057
chr16	215758	215858	6426051	0	-	0.47	(0.44,0.476]	chr16	617437	61	INTRON	INTRON	LUC7L	ENSG00000007392.17	ENST00000337351.8:ENST00000426094.5:ENST00000397783.5:ENST00000629543.2:ENST00000490762.5:ENST00000293872.13:ENST00000419516.5:ENST00000397780.5:ENST00000418978.5:ENST00000430864.5:ENST00000443357.5:ENST00000494366.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	28	392	2	2.44604	2.5902849999999997	2.73453	2.82558e-5	1.91872e-5	0.0043804	0.00336383
chr15	74786177	74786275	6063255	0	+	0.530612	(0.515,0.57]	chr15	577307	31	INTRON	INTRON	CSK	ENSG00000103653.17	ENST00000220003.14:ENST00000439220.6:ENST00000563894.1:ENST00000567123.1:ENST00000569462.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	57	2	1.68552	2.5902399999999997	3.49496	0.0292028	9.61701e-4	0.141637	0.0282401
chr5	881474	881571	2564508	0	-	0.546392	(0.515,0.57]	chr5	245484	4	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	BRD9	ENSG00000028310.18	ENST00000467963.6:ENST00000495265.5:ENST00000490814.6:ENST00000495794.5:ENST00000489816.5:ENST00000483173.5:ENST00000475706.5:ENST00000466684.5:ENST00000519838.5:ENST00000494422.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	57	2	1.68552	2.5902399999999997	3.49496	0.0292028	9.61701e-4	0.141637	0.0282401
chr7	155775852	155775951	3453234	0	+	0.424242	(0.408,0.44]	chr7	322755	8	UTR3	UTR3:EXON_MRNA	RBM33	ENSG00000184863.11	ENST00000401878.8:ENST00000341148.7	protein_coding	protein_coding	protein_coding	protein_coding	21	293	2	2.24087	2.5902250000000002	2.93958	1.39824e-4	2.40729e-5	0.0101841	0.00403281
chr11	77623569	77623668	4994198	0	-	0.242424	[0,0.28]	chr11	471926	5	INTRON	INTRON	CLNS1A	ENSG00000074201.9	ENST00000525428.6:ENST00000525064.5:ENST00000263309.7:ENST00000532069.5:ENST00000528364.1:ENST00000527133.2:ENST00000525359.1:ENST00000527265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	83	2	2.02929	2.590155	3.15102	0.0189138	0.00767596	0.118303	0.0753665
chr12	123187098	123187198	5443590	0	-	0.5	(0.476,0.515]	chr12	520806	55	INTRON	INTRON	MPHOSPH9	ENSG00000051825.15	ENST00000606320.6:ENST00000541076.6:ENST00000545556.6:ENST00000302373.8:ENST00000539024.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	36	2	2.23335	2.590135	2.94692	0.0634557	0.00794331	0.177047	0.0797304
chr7	141753978	141754078	3440260	0	+	0.51	(0.476,0.515]	chr7	320701	32	INTRON	INTRON	SSBP1	ENSG00000106028.11	ENST00000465582.5	protein_coding	protein_coding	protein_coding	protein_coding	2	36	2	2.23335	2.590135	2.94692	0.0634557	0.00794331	0.177047	0.0797304
chrX	44932884	44932984	7649199	0	+	0.48	(0.476,0.515]	chrX	782726	585	INTRON	INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000675440.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000621147.5:ENST00000475233.1:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	36	2	2.23335	2.590135	2.94692	0.0634557	0.00794331	0.177047	0.0797304
chr16	18153089	18153188	6454165	0	-	0.414141	(0.408,0.44]	chr16	621964	16	INTRON	INTRON	ENSG00000260242	ENSG00000260242.1	ENST00000563866.1	lncRNA	lncRNA	lncRNA	lncRNA	5	73	2	2.15507	2.5900999999999996	3.02513	0.00618525	0.0059965	0.0700606	0.0677395
chr22	19474370	19474468	7554848	0	-	0.530612	(0.515,0.57]	chr22	772386	22	INTRON	INTRON	UFD1	ENSG00000070010.19	ENST00000263202.15:ENST00000399523.5:ENST00000459854.5:ENST00000447868.5:ENST00000421968.6:ENST00000484101.5:ENST00000489406.1:ENST00000494054.1:ENST00000474226.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	50	2	1.75372	2.59008	3.42644	0.0386904	0.00106731	0.14279	0.0300133
chr22	16617714	16617814	7473520	0	+	0.37	(0.35,0.378]	chr22	761986	7	INTRON	INTRON	TPTEP1	ENSG00000100181.22	ENST00000558085.6:ENST00000400593.6:ENST00000426585.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	9	142	2	2.03616	2.58998	3.1438	0.00480774	9.93672e-5	0.0602209	0.00838841
chr15	92961344	92961444	6104327	0	+	0.32	(0.28,0.32]	chr15	581492	43	INTRON	INTRON	CHD2	ENSG00000173575.22	ENST00000626874.2:ENST00000394196.9:ENST00000635856.1:ENST00000625990.3:ENST00000637572.1:ENST00000636881.1:ENST00000628181.1:ENST00000627200.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	94	2	1.9822	2.58997	3.19774	0.00761984	0.00548491	0.0776647	0.0648867
chrX	101049550	101049650	7855259	0	-	0.5	(0.476,0.515]	chrX	800835	55	INTRON	INTRON	TRMT2B:TRMT2B-AS1	ENSG00000188917.15:ENSG00000225839.2	ENST00000545398.5:ENST00000372936.4:ENST00000372939.5:ENST00000372935.5:ENST00000478422.1:ENST00000443801.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA:processed_transcript	4	58	2	2.29359	2.589945	2.8863	0.0111679	0.00584957	0.0877435	0.0689807
chr13	19696083	19696183	5552066	0	-	0.36	(0.35,0.378]	chr13	530672	171	INTRON	INTRON	PSPC1	ENSG00000121390.19	ENST00000471658.5:ENST00000492741.5:ENST00000635562.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	3	52	2	2.34278	2.5899349999999997	2.83709	0.01435	0.0129593	0.0991015	0.0966737
chr19	41283260	41283359	7071240	0	+	0.373737	(0.35,0.378]	chr19	706761	16	INTRON	INTRON	HNRNPUL1	ENSG00000105323.18	ENST00000352456.7:ENST00000595018.5:ENST00000599719.5:ENST00000392006.8:ENST00000378215.8:ENST00000595196.5:ENST00000617774.1:ENST00000602130.5:ENST00000593587.5:ENST00000263367.7:ENST00000599614.5:ENST00000600596.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	52	2	2.34278	2.5899349999999997	2.83709	0.01435	0.0129593	0.0991015	0.0966737
chr10	87280371	87280471	4660760	0	-	0.49	(0.476,0.515]	chr10	429440	338	INTRON	INTRON	NUTM2A-AS1	ENSG00000223482.9	ENST00000692417.1:ENST00000688214.1:ENST00000659257.1:ENST00000671543.1:ENST00000451940.6:ENST00000687947.1:ENST00000663644.1:ENST00000684884.1:ENST00000664664.1:ENST00000446751.6:ENST00000456104.5:ENST00000433530.7:ENST00000688257.1:ENST00000433920.5:ENST00000687925.1:ENST00000666515.2:ENST00000688926.1:ENST00000447424.6:ENST00000690598.1:ENST00000663113.1:ENST00000667520.2:ENST00000693252.1:ENST00000687827.1:ENST00000687141.1	lncRNA	lncRNA	lncRNA	lncRNA	4	64	2	2.49941	2.58982	2.68023	0.00811651	0.00353671	0.0766625	0.0546236
chr8	9031686	9031783	3695854	0	+	0.340206	(0.32,0.35]	chr8	342942	18	UTR3	UTR3:EXON_MRNA:INTRON	ERI1	ENSG00000104626.15	ENST00000519292.5:ENST00000250263.8:ENST00000520332.5:ENST00000518663.1:ENST00000522612.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	143	2	2.44948	2.589775	2.73007	0.00226667	3.84645e-4	0.0425751	0.0177489
chr1	26725209	26725309	51463	0	+	0.44	(0.408,0.44]	chr1	6542	273	INTRON	INTRON	ARID1A	ENSG00000117713.21	ENST00000430799.7:ENST00000324856.13:ENST00000637465.1:ENST00000457599.6	protein_coding	protein_coding	protein_coding	protein_coding	3	49	2	1.81572	2.58975	3.36378	0.0626779	0.0016048	0.175915	0.0367961
chr3	47127362	47127462	1681238	0	-	0.41	(0.408,0.44]	chr3	171624	3	INTRON	INTRON	SETD2	ENSG00000181555.22	ENST00000691544.1:ENST00000638947.2:ENST00000409792.4:ENST00000412450.1	protein_coding	protein_coding	protein_coding	protein_coding	3	49	2	1.81572	2.58975	3.36378	0.0626779	0.0016048	0.175915	0.0367961
chr5	55287902	55287998	2621263	0	-	0.416667	(0.408,0.44]	chr5	248979	17	INTRON	INTRON	DHX29	ENSG00000067248.11	ENST00000251636.10:ENST00000504778.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	89	2	2.38802	2.58963	2.79124	0.00276922	0.00178825	0.0469265	0.0392749
chr1	120286327	120286426	202997	0	+	0.30303	(0.28,0.32]	chr1	22366	79	INTRON	INTRON	ENSG00000274642	ENSG00000274642.1	ENST00000612320.1	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	2	45	2	2.2609	2.58961	2.91832	0.0671429	0.0102484	0.183051	0.089002
chr5	146500567	146500663	2516056	0	+	0.3125	(0.28,0.32]	chr5	240386	2	INTRON	INTRON	TCERG1	ENSG00000113649.13	ENST00000296702.9:ENST00000679501.2:ENST00000394421.7:ENST00000549332.1:ENST00000506524.5:ENST00000505285.5:ENST00000504116.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	45	2	2.2609	2.58961	2.91832	0.0671429	0.0102484	0.183051	0.089002
chr9	132353348	132353448	4367153	0	-	0.31	(0.28,0.32]	chr9	401509	3	SS5_PROX	SS5_PROX:INTRON	SETX	ENSG00000107290.14	ENST00000224140.6	protein_coding	protein_coding	protein_coding	protein_coding	2	45	2	2.2609	2.58961	2.91832	0.0671429	0.0102484	0.183051	0.089002
chr3	152313235	152313335	1535431	0	+	0.56	(0.515,0.57]	chr3	159996	109	INTRON	INTRON	MBNL1	ENSG00000152601.18	ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000495875.6:ENST00000324210.10:ENST00000493459.5:ENST00000459747.1:ENST00000460591.5:ENST00000545754.5:ENST00000357472.7:ENST00000324196.9:ENST00000498502.5:ENST00000463374.5:ENST00000485910.5:ENST00000465907.6:ENST00000492948.5:ENST00000485509.5:ENST00000464596.5	protein_coding	protein_coding	protein_coding	protein_coding	13	164	2	2.47707	2.5896049999999997	2.70214	3.62217e-4	3.86081e-5	0.0176171	0.00501161
chr6	111265880	111265980	2939844	0	+	0.51	(0.476,0.515]	chr6	276920	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	MFSD4B	ENSG00000173214.7	ENST00000672303.1:ENST00000671876.2:ENST00000672750.1:ENST00000672191.1:ENST00000368847.5:ENST00000672554.1:ENST00000673024.1:ENST00000671883.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	58	2	1.80284	2.58958	3.37632	0.033161	0.00195267	0.145899	0.0400465
chr12	120871213	120871313	5435576	0	-	0.22	[0,0.28]	chr12	519663	357	INTRON	INTRON	SPPL3	ENSG00000157837.16	ENST00000353487.7:ENST00000536996.5:ENST00000543608.5:ENST00000543854.5	protein_coding	protein_coding	protein_coding	protein_coding	2	51	2	2.27119	2.5895799999999998	2.90797	0.070351	0.0118539	0.184298	0.0962115
chr14	54972275	54972375	5899486	0	-	0.48	(0.476,0.515]	chr14	560290	45	INTRON	INTRON	WDHD1	ENSG00000198554.12	ENST00000360586.8:ENST00000420358.2:ENST00000567693.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	36	2	2.47949	2.5895799999999998	2.69967	0.0326974	0.0195838	0.145164	0.109483
chr15	80064815	80064915	6071084	0	+	0.49	(0.476,0.515]	chr15	578304	37	INTRON	INTRON	ZFAND6	ENSG00000086666.19	ENST00000613266.4:ENST00000561060.5:ENST00000559157.5:ENST00000261749.11:ENST00000561012.5:ENST00000564367.5:ENST00000558494.5:ENST00000618205.4:ENST00000560470.5	protein_coding	protein_coding	protein_coding	protein_coding	2	36	2	2.47949	2.5895799999999998	2.69967	0.0326974	0.0195838	0.145164	0.109483
chr19	32613260	32613360	7168975	0	-	0.5	(0.476,0.515]	chr19	724362	49	INTRON	INTRON	ANKRD27	ENSG00000105186.16	ENST00000306065.9	protein_coding	protein_coding	protein_coding	protein_coding	2	36	2	2.47949	2.5895799999999998	2.69967	0.0326974	0.0195838	0.145164	0.109483
chr2	15485245	15485343	1072398	0	-	0.22449	[0,0.28]	chr2	114423	15	INTRON	INTRON	NBAS	ENSG00000151779.13	ENST00000281513.10:ENST00000427792.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	51	2	2.27119	2.5895799999999998	2.90797	0.070351	0.0118539	0.184298	0.0962115
chr2	63959657	63959757	1139409	0	-	0.51	(0.476,0.515]	chr2	122003	101	INTRON	INTRON	VPS54	ENSG00000143952.20	ENST00000409558.8:ENST00000272322.9:ENST00000354504.7	protein_coding	protein_coding	protein_coding	protein_coding	2	36	2	2.47949	2.5895799999999998	2.69967	0.0326974	0.0195838	0.145164	0.109483
chr20	59031521	59031620	7359605	0	-	0.484848	(0.476,0.515]	chr20	750560	7	INTRON	INTRON	ATP5F1E	ENSG00000124172.10	ENST00000243997.8:ENST00000395663.1:ENST00000395659.1	protein_coding	protein_coding	protein_coding	protein_coding	2	36	2	2.47949	2.5895799999999998	2.69967	0.0326974	0.0195838	0.145164	0.109483
chr21	39272011	39272109	7465117	0	-	0.214286	[0,0.28]	chr21	760518	12	INTRON	INTRON	BRWD1	ENSG00000185658.14	ENST00000333229.6:ENST00000342449.8:ENST00000380800.7:ENST00000430093.5:ENST00000445245.5:ENST00000445668.5:ENST00000412604.1:ENST00000455867.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	51	2	2.27119	2.5895799999999998	2.90797	0.070351	0.0118539	0.184298	0.0962115
chr5	145657505	145657605	2744856	0	-	0.48	(0.476,0.515]	chr5	258670	1838	INTRON	INTRON	PRELID2	ENSG00000186314.12	ENST00000510259.5	protein_coding	processed_transcript	protein_coding	processed_transcript	2	36	2	2.47949	2.5895799999999998	2.69967	0.0326974	0.0195838	0.145164	0.109483
chr5	181295046	181295097	2563654	0	+	0.490196	(0.476,0.515]	chr5	245343	1	EXON_PSEUDO	EXON_PSEUDO	ENSG00000274525	ENSG00000274525.1	ENST00000622195.1	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	2	36	2	2.47949	2.5895799999999998	2.69967	0.0326974	0.0195838	0.145164	0.109483
chr6	157045437	157045536	3009852	0	+	0.494949	(0.476,0.515]	chr6	281145	82	INTRON	INTRON	ARID1B	ENSG00000049618.24	ENST00000346085.10:ENST00000636930.2:ENST00000647938.1:ENST00000350026.10:ENST00000674298.1:ENST00000674190.1:ENST00000414678.7:ENST00000319584.11:ENST00000452544.2:ENST00000637887.1:ENST00000635849.1:ENST00000637003.1:ENST00000637904.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	36	2	2.47949	2.5895799999999998	2.69967	0.0326974	0.0195838	0.145164	0.109483
chrX	80740555	80740654	7849741	0	-	0.484848	(0.476,0.515]	chrX	800576	41	INTRON	INTRON	BRWD3	ENSG00000165288.11	ENST00000373275.5	protein_coding	protein_coding	protein_coding	protein_coding	2	36	2	2.47949	2.5895799999999998	2.69967	0.0326974	0.0195838	0.145164	0.109483
chr16	9106245	9106344	6285518	0	+	0.313131	(0.28,0.32]	chr16	601929	31	UTR3	UTR3:EXON_MRNA:INTRON	C16orf72	ENSG00000182831.12	ENST00000327827.12:ENST00000574285.2	protein_coding	protein_coding	protein_coding	protein_coding	29	490	2	2.17906	2.589545	3.00003	1.85223e-4	3.37452e-5	0.011871	0.00489482
chr20	62924341	62924441	7362433	0	-	0.36	(0.35,0.378]	chr20	751210	96	INTRON	INTRON	DIDO1	ENSG00000101191.17	ENST00000266070.8:ENST00000395343.6:ENST00000395340.5:ENST00000370371.8:ENST00000370368.5:ENST00000354665.8	protein_coding	protein_coding	protein_coding	protein_coding	7	117	2	2.43849	2.589545	2.7406	0.00430822	3.25081e-4	0.0578073	0.0160177
chr6	157913498	157913597	3016678	0	+	0.333333	(0.32,0.35]	chr6	281411	31	INTRON	INTRON	SNX9	ENSG00000130340.17	ENST00000680863.1:ENST00000679814.1:ENST00000680464.1:ENST00000681186.1:ENST00000679732.1:ENST00000681183.1:ENST00000681534.1:ENST00000681651.1:ENST00000680089.1:ENST00000680078.1:ENST00000680974.1:ENST00000680095.1:ENST00000681138.1:ENST00000392185.8:ENST00000679790.1:ENST00000680495.1:ENST00000679691.1:ENST00000681881.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	67	2	2.18777	2.5895099999999998	2.99125	0.00958447	0.00951422	0.0863913	0.0820838
chr10	823003	823100	4541478	0	-	0.556701	(0.515,0.57]	chr10	419220	18	INTRON	INTRON	LARP4B	ENSG00000107929.16	ENST00000688365.1:ENST00000316157.8:ENST00000690516.1:ENST00000689323.1:ENST00000688042.1:ENST00000690211.1:ENST00000448368.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	59	2	1.44089	2.58949	3.73809	0.0617046	3.11298e-4	0.193423	0.0162055
chr3	42623410	42623510	1406206	0	+	0.32	(0.28,0.32]	chr3	147675	15	INTRON	INTRON	NKTR	ENSG00000114857.19	ENST00000468735.6:ENST00000487466.5:ENST00000429888.5:ENST00000232978.13:ENST00000478488.1:ENST00000465584.5:ENST00000466553.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	19	336	2	2.29889	2.5894700000000004	2.88005	2.14312e-4	1.33646e-4	0.0128514	0.0105393
chr1	156729415	156729515	231674	0	+	0.42	(0.408,0.44]	chr1	27432	2	SS5_PROX	SS5_PROX:INTRON	METTL25B	ENSG00000143303.12	ENST00000368218.8:ENST00000368216.9:ENST00000519086.5:ENST00000524343.1	protein_coding	protein_coding	protein_coding	protein_coding	2	37	2	2.3975	2.58936	2.78122	0.040266	0.015812	0.161534	0.101453
chr12	112052958	112053057	5414849	0	-	0.424242	(0.408,0.44]	chr12	517165	30	INTRON	INTRON	NAA25	ENSG00000111300.10	ENST00000261745.9:ENST00000552527.5:ENST00000549711.5:ENST00000551858.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	37	2	2.3975	2.58936	2.78122	0.040266	0.015812	0.161534	0.101453
chr19	49927393	49927493	7202024	0	-	0.44	(0.408,0.44]	chr19	730675	3	SS5_PROX	SS5_PROX:INTRON	NUP62	ENSG00000213024.12	ENST00000422090.2:ENST00000352066.8:ENST00000597723.5:ENST00000597029.5:ENST00000596217.1:ENST00000595463.5:ENST00000593652.5:ENST00000599567.5:ENST00000596437.5:ENST00000600583.5:ENST00000594673.5:ENST00000599788.1:ENST00000600935.1:ENST00000596680.5:ENST00000601665.5:ENST00000599560.5:ENST00000599186.5:ENST00000597814.1:ENST00000599830.1:ENST00000598301.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	37	2	2.3975	2.58936	2.78122	0.040266	0.015812	0.161534	0.101453
chr6	4791304	4791404	2791011	0	+	0.33	(0.32,0.35]	chr6	263598	141	INTRON	INTRON	CDYL	ENSG00000153046.18	ENST00000328908.9:ENST00000491864.1:ENST00000440139.5:ENST00000483019.1:ENST00000397588.8:ENST00000472453.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	77	2	2.09005	2.589345	3.08864	0.0330483	6.64579e-4	0.133816	0.0233423
chr17	32378394	32378494	6598279	0	+	0.29	(0.28,0.32]	chr17	641948	51	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ZNF207	ENSG00000010244.19	ENST00000394670.9:ENST00000577908.5:ENST00000581531.5:ENST00000584416.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	14	247	2	1.88816	2.589335	3.29051	0.00310592	5.28678e-5	0.0512344	0.0063584
chr5	43298008	43298071	2614276	0	-	0.460317	(0.44,0.476]	chr5	248514	1	CDS	CDS:EXON_MRNA	HMGCS1	ENSG00000112972.15	ENST00000325110.11:ENST00000433297.2	protein_coding	protein_coding	protein_coding	protein_coding	11	150	2	2.33627	2.589335	2.8424	6.35745e-4	3.27769e-4	0.0231636	0.0160995
chr10	914896	914996	4542419	0	-	0.24	[0,0.28]	chr10	419304	115	INTRON	INTRON	LARP4B	ENSG00000107929.16	ENST00000316157.8:ENST00000690516.1:ENST00000476529.5:ENST00000406525.6:ENST00000481118.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	51	2	2.54624	2.5893100000000002	2.63238	0.0388449	0.0259691	0.143072	0.133676
chr9	122285680	122285779	4194319	0	+	0.252525	[0,0.28]	chr9	382685	5	EXON_MRNA	EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MRRF	ENSG00000148187.18	ENST00000297908.7:ENST00000344641.8:ENST00000373723.9:ENST00000373729.5:ENST00000373728.6:ENST00000470366.5:ENST00000373724.1:ENST00000467864.5:ENST00000489572.5:ENST00000394315.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	51	2	2.54624	2.5893100000000002	2.63238	0.0388449	0.0259691	0.143072	0.133676
chr10	27143664	27143761	4586180	0	-	0.319588	(0.28,0.32]	chr10	422765	8	INTRON	INTRON	YME1L1	ENSG00000136758.20	ENST00000376016.8:ENST00000613434.4:ENST00000326799.7:ENST00000491542.6:ENST00000427324.5:ENST00000396296.7	protein_coding	protein_coding	protein_coding	protein_coding	2	45	2	2.57195	2.589255	2.60656	0.0331711	0.0256827	0.133994	0.133676
chr14	49664325	49664425	5886260	0	-	0.32	(0.28,0.32]	chr14	558580	3	SS5_PROX	SS5_PROX:INTRON	POLE2	ENSG00000100479.13	ENST00000216367.10:ENST00000539565.6:ENST00000556584.5:ENST00000554396.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	45	2	2.57195	2.589255	2.60656	0.0331711	0.0256827	0.133994	0.133676
chr17	28066762	28066862	6582762	0	+	0.29	(0.28,0.32]	chr17	639837	48	INTRON	INTRON	NLK	ENSG00000087095.13	ENST00000407008.8:ENST00000496808.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	45	2	2.57195	2.589255	2.60656	0.0331711	0.0256827	0.133994	0.133676
chrX	118356461	118356560	7707211	0	+	0.30303	(0.28,0.32]	chrX	788534	95	INTRON	INTRON	WDR44	ENSG00000131725.14	ENST00000371822.9:ENST00000254029.8:ENST00000371825.7:ENST00000493448.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	45	2	2.57195	2.589255	2.60656	0.0331711	0.0256827	0.133994	0.133676
chr1	246007560	246007660	675706	0	-	0.49	(0.476,0.515]	chr1	79713	191	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000391836.3:ENST00000464398.1:ENST00000453676.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	77	2	2.21025	2.589245	2.96824	0.00913757	9.98194e-4	0.0812335	0.0290732
chr11	66622517	66622615	4810858	0	+	0.387755	(0.378,0.408]	chr11	447861	12	INTRON	INTRON	RBM14-RBM4:RBM14	ENSG00000248643.5:ENSG00000239306.5	ENST00000412278.2:ENST00000393979.3:ENST00000511114.1:ENST00000310137.5:ENST00000409372.1:ENST00000421355.1:ENST00000443702.1:ENST00000500635.2:ENST00000409738.4:ENST00000461478.1:ENST00000496694.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	93	2	2.1245	2.589195	3.05389	0.00724232	6.75567e-4	0.0729826	0.0236067
chr16	85576842	85576942	6415600	0	+	0.58	(0.57,1]	chr16	615470	201	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	6	50	2	2.32017	2.589095	2.85802	0.00488159	3.01883e-4	0.0640618	0.0160895
chrX	24701688	24701785	7631762	0	+	0.474227	(0.44,0.476]	chrX	781599	18	INTRON	INTRON	POLA1	ENSG00000101868.13	ENST00000678847.1:ENST00000672178.1:ENST00000379068.8:ENST00000677890.1:ENST00000379059.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	61	2	2.2193	2.58895	2.9586	0.00896114	0.00758318	0.0800073	0.0773151
chr2	28775251	28775351	724884	0	+	0.5	(0.476,0.515]	chr2	83720	227	INTRON	INTRON	PPP1CB	ENSG00000213639.10	ENST00000455580.5:ENST00000420282.5:ENST00000441461.5:ENST00000427786.1:ENST00000358506.6:ENST00000296122.10:ENST00000395366.3:ENST00000464273.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	59	2	2.41328	2.58894	2.7646	0.0162075	0.00355364	0.101453	0.0547657
chr3	152270876	152270976	1535003	0	+	0.37	(0.35,0.378]	chr3	159981	7	INTRON	INTRON	MBNL1	ENSG00000152601.18	ENST00000477171.1:ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000461436.1:ENST00000495875.6:ENST00000324210.10:ENST00000493459.5:ENST00000459747.1:ENST00000460591.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	52	2	2.2877	2.588865	2.89003	0.0155765	0.0122391	0.109411	0.0910127
chr1	65271020	65271120	135703	0	+	0.29	(0.28,0.32]	chr1	15346	57	INTRON	INTRON	DNAJC6	ENSG00000116675.16	ENST00000463018.5:ENST00000494710.6:ENST00000263441.11:ENST00000395325.7:ENST00000483402.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	62	2	2.25939	2.5888549999999997	2.91832	0.021772	0.0102484	0.11491	0.089002
chr7	133678925	133679025	3422440	0	+	0.29	(0.28,0.32]	chr7	319395	484	INTRON	INTRON	EXOC4	ENSG00000131558.15	ENST00000253861.5:ENST00000479839.6:ENST00000483800.5:ENST00000469115.5:ENST00000489931.5:ENST00000482089.5:ENST00000460346.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	62	2	2.25939	2.5888549999999997	2.91832	0.021772	0.0102484	0.11491	0.089002
chr5	10370519	10370619	2317815	0	+	0.32	(0.28,0.32]	chr5	224612	155	INTRON	INTRON	MARCHF6	ENSG00000145495.16	ENST00000274140.10:ENST00000449913.6:ENST00000502795.5:ENST00000511802.5:ENST00000503788.5:ENST00000640713.1:ENST00000510872.5:ENST00000507863.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	75	2	2.4468	2.588785	2.73077	0.0220748	0.0037095	0.115395	0.0561833
chr11	17204006	17204106	4929041	0	-	0.52	(0.515,0.57]	chr11	461500	3	SS5_PROX	SS5_PROX:INTRON	PIK3C2A	ENSG00000011405.14	ENST00000531428.1:ENST00000691414.1:ENST00000533645.1:ENST00000532035.1:ENST00000503729.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	56	2	2.21273	2.5887000000000002	2.96467	0.0196151	8.94279e-4	0.109486	0.0273458
chr9	130089175	130089275	4211315	0	+	0.4	(0.378,0.408]	chr9	386029	23	INTRON	INTRON	GPR107	ENSG00000148358.20	ENST00000372406.5:ENST00000372410.7:ENST00000347136.11:ENST00000493417.5:ENST00000610997.1:ENST00000462907.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	52	2	2.38873	2.5887000000000002	2.78867	0.0458857	0.00226991	0.149888	0.0437013
chrX	47226110	47226194	7655912	0	+	0.559524	(0.515,0.57]	chrX	783352	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CDK16	ENSG00000102225.17	ENST00000457458.6:ENST00000357227.9:ENST00000517426.5:ENST00000522234.5:ENST00000428400.5:ENST00000518022.5:ENST00000276052.10:ENST00000523344.5:ENST00000523699.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	56	2	2.21273	2.5887000000000002	2.96467	0.0196151	8.94279e-4	0.109486	0.0273458
chr18	1353762	1353862	6941718	0	-	0.27	[0,0.28]	chr18	686588	3	SS3_PROX	SS3_PROX:INTRON	LINC00470	ENSG00000132204.14	ENST00000657423.1:ENST00000657618.1:ENST00000584090.5:ENST00000660947.1:ENST00000669242.1:ENST00000660475.1:ENST00000653775.1:ENST00000661931.1:ENST00000412816.7:ENST00000577867.5:ENST00000584492.5:ENST00000667416.1:ENST00000661852.1:ENST00000657919.1:ENST00000661646.1:ENST00000667776.1:ENST00000654559.1:ENST00000661233.1:ENST00000653213.1:ENST00000659094.1:ENST00000660964.1:ENST00000577403.6:ENST00000660358.1:ENST00000669153.1:ENST00000657121.1:ENST00000655957.1:ENST00000659289.1:ENST00000665133.1:ENST00000671558.1:ENST00000666542.1:ENST00000663512.1:ENST00000582862.6:ENST00000578835.5:ENST00000669312.1:ENST00000581430.5:ENST00000581212.1:ENST00000658090.1:ENST00000667225.1	lncRNA	lncRNA	lncRNA	lncRNA	3	69	2	2.48813	2.588655	2.68918	0.0275571	0.00953591	0.123904	0.0863913
chr3	197752505	197752604	1597352	0	+	0.252525	[0,0.28]	chr3	165493	13	INTRON	INTRON	FYTTD1	ENSG00000122068.13	ENST00000428738.5:ENST00000494309.5:ENST00000415708.6:ENST00000412924.5:ENST00000241502.9:ENST00000418169.5:ENST00000426031.5:ENST00000424384.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	69	2	2.48813	2.588655	2.68918	0.0275571	0.00953591	0.123904	0.0863913
chr11	59798879	59798977	4795587	0	+	0.459184	(0.44,0.476]	chr11	444014	11	INTRON	INTRON	STX3	ENSG00000166900.17	ENST00000641815.1:ENST00000337979.9:ENST00000533637.5:ENST00000633708.1:ENST00000529177.5:ENST00000530221.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	129	2	2.40554	2.588615	2.77169	8.89744e-4	5.0428e-4	0.0274757	0.0202328
chr17	27302806	27302900	6580621	0	+	0.329787	(0.32,0.35]	chr17	639611	5	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	WSB1	ENSG00000109046.15	ENST00000581440.5:ENST00000578312.5:ENST00000583742.1:ENST00000467843.6:ENST00000579733.5:ENST00000583193.5:ENST00000262394.7:ENST00000427287.6:ENST00000581185.5:ENST00000581089.1:ENST00000348811.6:ENST00000582208.1:ENST00000584114.1:ENST00000487603.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	19	281	2	2.25469	2.58853	2.92237	2.57005e-4	1.62553e-4	0.0148796	0.0109774
chr2	241754575	241754630	1056512	0	+	0.309091	(0.28,0.32]	chr2	112678	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	D2HGDH	ENSG00000180902.18	ENST00000403782.5:ENST00000436747.5:ENST00000321264.9:ENST00000400769.6:ENST00000432449.1:ENST00000467427.5:ENST00000486953.5:ENST00000470343.5:ENST00000473126.1:ENST00000468064.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	93	2	1.59898	2.58853	3.57808	0.030453	0.00141407	0.143385	0.0340865
chr11	77793447	77793547	4995704	0	-	0.37	(0.35,0.378]	chr11	472047	284	INTRON	INTRON	RSF1	ENSG00000048649.14	ENST00000308488.11:ENST00000528095.5:ENST00000440064.2:ENST00000467567.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	97	2	1.93774	2.58852	3.2393	0.0149786	2.86552e-4	0.0994339	0.0150568
chr3	99828540	99828640	1462007	0	+	0.45	(0.44,0.476]	chr3	153488	101	INTRON	INTRON	CMSS1	ENSG00000184220.12	ENST00000463526.1:ENST00000421999.8:ENST00000491299.5:ENST00000496116.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	78	2	2.26452	2.58852	2.91252	0.00654074	0.00164027	0.0735539	0.0369207
chr1	211825960	211826060	631360	0	-	0.34	(0.32,0.35]	chr1	74654	324	INTRON	INTRON	LPGAT1	ENSG00000123684.13	ENST00000366997.9:ENST00000366996.1	protein_coding	protein_coding	protein_coding	protein_coding	3	56	2	1.99307	2.588495	3.18392	0.04271	0.00379806	0.148082	0.0562562
chr5	54295312	54295412	2620766	0	-	0.38	(0.378,0.408]	chr5	248862	91	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2:ENST00000505630.5:ENST00000505383.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	81	2	2.47752	2.5884850000000004	2.69945	0.0092831	9.70462e-4	0.0817766	0.0286926
chr1	225407725	225407823	645543	0	-	0.336735	(0.32,0.35]	chr1	76339	5	INTRON	INTRON	LBR	ENSG00000143815.15	ENST00000272163.9:ENST00000338179.6:ENST00000651341.1:ENST00000424022.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	116	2	2.36431	2.5884650000000002	2.81262	0.00311322	0.00127288	0.0498063	0.0331457
chr3	40536786	40536886	1402589	0	+	0.3	(0.28,0.32]	chr3	147394	38	UTR3	UTR3:EXON_MRNA:INTRON	ZNF621	ENSG00000172888.12	ENST00000310898.5:ENST00000339296.10:ENST00000490457.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	74	2	1.86798	2.588455	3.30893	0.0335733	0.00260504	0.134145	0.0470772
chr10	827377	827471	4541525	0	-	0.244681	[0,0.28]	chr10	419229	2	INTRON	INTRON	LARP4B	ENSG00000107929.16	ENST00000688365.1:ENST00000316157.8:ENST00000690516.1:ENST00000689323.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	69	2	2.20073	2.588445	2.97616	0.0235708	0.0128425	0.128907	0.0926667
chr6	57138233	57138332	2878550	0	+	0.464646	(0.44,0.476]	chr6	273283	30	INTRON	INTRON	ZNF451	ENSG00000112200.17	ENST00000357489.7:ENST00000444273.6:ENST00000370706.9:ENST00000491832.6:ENST00000502749.1:ENST00000504603.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	18	258	2	2.49499	2.5884400000000003	2.68189	1.06474e-4	4.89936e-5	0.00924854	0.00572797
chr3	133583501	133583601	1509591	0	+	0.38	(0.378,0.408]	chr3	157876	1	SS3_PROX	SS3_PROX:INTRON	CDV3	ENSG00000091527.17	ENST00000688838.1:ENST00000264993.8:ENST00000431519.6:ENST00000503932.6:ENST00000508481.5:ENST00000420115.6:ENST00000504867.5:ENST00000511392.5:ENST00000507408.5:ENST00000515421.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	53	2	1.81685	2.5884150000000004	3.35998	0.0597868	0.00230615	0.189982	0.0428247
chr17	82207130	82207230	6852400	0	-	0.53	(0.515,0.57]	chr17	679086	48	INTRON	INTRON	CCDC57	ENSG00000176155.21	ENST00000694881.1:ENST00000389641.9:ENST00000694882.1:ENST00000665763.1:ENST00000578910.2:ENST00000392343.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	56	2	2.45585	2.588325	2.7208	0.00797827	0.00306828	0.0798772	0.0494933
chr16	3129067	3129166	6433202	0	-	0.494949	(0.476,0.515]	chr16	619147	28	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	ZNF213-AS1	ENSG00000263072.9	ENST00000674022.1:ENST00000673666.1:ENST00000572691.2:ENST00000664624.1:ENST00000670666.1:ENST00000653667.1:ENST00000668823.1:ENST00000657201.1:ENST00000657996.1:ENST00000576490.2:ENST00000575139.1:ENST00000692817.1:ENST00000668778.1:ENST00000654387.1:ENST00000686529.1:ENST00000659227.1:ENST00000691772.1:ENST00000685085.1:ENST00000570901.3:ENST00000686892.1:ENST00000573414.2:ENST00000654482.1:ENST00000571963.5:ENST00000573447.2:ENST00000571449.2:ENST00000652946.1:ENST00000658602.1:ENST00000653148.1	lncRNA	lncRNA	lncRNA	lncRNA	5	67	2	1.82595	2.58827	3.35059	0.0202339	0.00171515	0.109955	0.0381936
chr9	129090247	129090342	4208988	0	+	0.431579	(0.408,0.44]	chr9	385587	14	UTR3	UTR3:EXON_MRNA	DOLPP1	ENSG00000167130.18	ENST00000372546.9:ENST00000406974.7:ENST00000327812.12	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	79	2	2.39349	2.58819	2.78289	0.00467273	0.0022785	0.0600108	0.0437013
chr10	87866081	87866172	4482950	0	+	0.32967	(0.32,0.35]	chr10	412539	1	INTRON	INTRON	PTEN	ENSG00000171862.12	ENST00000688308.1:ENST00000693560.1:ENST00000371953.8:ENST00000688158.1:ENST00000686459.1:ENST00000487939.1:ENST00000462694.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	42	2	2.48693	2.58807	2.68921	0.0338094	0.0230336	0.146709	0.118056
chr19	4996486	4996586	7003690	0	+	0.49	(0.476,0.515]	chr19	694800	269	INTRON	INTRON	KDM4B	ENSG00000127663.15	ENST00000159111.9:ENST00000611640.4:ENST00000588337.5:ENST00000381759.8	protein_coding	protein_coding	protein_coding	protein_coding	3	48	2	1.92984	2.58807	3.2463	0.0466474	0.00262374	0.151522	0.0470772
chr1	89543732	89543832	157589	0	+	0.53	(0.515,0.57]	chr1	17165	164	INTRON	INTRON	LRRC8B	ENSG00000197147.15	ENST00000330947.7:ENST00000439853.6:ENST00000449440.5:ENST00000640258.1:ENST00000639264.1	protein_coding	protein_coding	protein_coding	protein_coding	7	84	2	2.01561	2.58799	3.16037	0.00518674	4.09074e-4	0.0654085	0.0185763
chr1	50922380	50922480	451877	0	-	0.43	(0.408,0.44]	chr1	54267	640	INTRON	INTRON	FAF1	ENSG00000185104.21	ENST00000396153.7:ENST00000487898.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	67	2	1.58026	2.58795	3.59564	0.0444624	5.73354e-4	0.149888	0.0217398
chr11	240071	240170	4718067	0	+	0.363636	(0.35,0.378]	chr11	435646	6	INTRON	INTRON	PSMD13	ENSG00000185627.19	ENST00000529372.5:ENST00000532097.6:ENST00000431206.6:ENST00000534590.5:ENST00000528906.5:ENST00000525665.5:ENST00000527047.5:ENST00000352303.9:ENST00000382671.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	97	2	1.90784	2.58794	3.26804	0.0165983	2.47065e-4	0.102621	0.0139149
chr15	40794607	40794707	6151686	0	-	0.39	(0.378,0.408]	chr15	585210	139	INTRON	INTRON	DNAJC17	ENSG00000104129.10	ENST00000220496.9:ENST00000559238.5:ENST00000560645.5:ENST00000560065.6:ENST00000561018.5:ENST00000559310.3:ENST00000560301.5:ENST00000627802.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	37	2	2.38873	2.58789	2.78705	0.0458857	0.0135539	0.149888	0.101363
chr19	5104338	5104438	7004784	0	+	0.38	(0.378,0.408]	chr19	694855	215	INTRON	INTRON	KDM4B	ENSG00000127663.15	ENST00000159111.9:ENST00000611640.4:ENST00000381759.8:ENST00000536461.5:ENST00000589104.5:ENST00000588961.1:ENST00000588361.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	37	2	2.38873	2.58789	2.78705	0.0458857	0.0135539	0.149888	0.101363
chr1	112630271	112630371	186433	0	+	0.3	(0.28,0.32]	chr1	20636	100	INTRON	INTRON	CAPZA1	ENSG00000116489.13	ENST00000485542.5:ENST00000476936.5:ENST00000263168.4:ENST00000498626.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	61	2	1.86684	2.587885	3.30893	0.0605813	0.00260504	0.171122	0.0470772
chr15	58056415	58056514	6187449	0	-	0.333333	(0.32,0.35]	chr15	589786	180	INTRON	INTRON	ALDH1A2	ENSG00000128918.15	ENST00000537372.5:ENST00000249750.9:ENST00000347587.7:ENST00000430119.6:ENST00000558231.5:ENST00000558595.5:ENST00000558239.5:ENST00000557967.5:ENST00000558073.5:ENST00000559297.5:ENST00000560122.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	143	2	2.30766	2.587885	2.86811	0.00406148	1.82911e-4	0.0558167	0.01176
chr11	83072444	83072542	4840430	0	+	0.591837	(0.57,1]	chr11	451463	5	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RAB30-DT	ENSG00000246067.9	ENST00000656330.1:ENST00000658004.1:ENST00000527627.5:ENST00000669459.2:ENST00000689041.1:ENST00000526795.1:ENST00000501011.8:ENST00000663168.1:ENST00000533528.1:ENST00000655468.1:ENST00000533708.1:ENST00000534499.1:ENST00000669058.1:ENST00000528156.1:ENST00000530270.2:ENST00000658917.1	lncRNA	lncRNA	lncRNA	lncRNA	3	26	2	2.28103	2.58783	2.89463	0.0151554	0.00788262	0.108535	0.076155
chr22	49606253	49606353	7602143	0	-	0.58	(0.57,1]	chr22	778570	106	INTRON	INTRON	MIR3667HG	ENSG00000188511.13	ENST00000414287.5:ENST00000416411.1:ENST00000689875.1	lncRNA	lncRNA	lncRNA	lncRNA	3	26	2	2.28103	2.58783	2.89463	0.0151554	0.00788262	0.108535	0.076155
chr1	55069802	55069900	464354	0	-	0.397959	(0.378,0.408]	chr1	55917	3	INTRON	INTRON	USP24	ENSG00000162402.14	ENST00000294383.7	protein_coding	protein_coding	protein_coding	protein_coding	2	37	2	2.46373	2.58778	2.71183	0.0382831	0.0170789	0.141795	0.110899
chr12	54298667	54298765	5330973	0	-	0.397959	(0.378,0.408]	chr12	508659	9	INTRON	INTRON	NFE2	ENSG00000123405.14	ENST00000435572.7:ENST00000553070.5	protein_coding	protein_coding	protein_coding	protein_coding	2	37	2	2.46373	2.58778	2.71183	0.0382831	0.0170789	0.141795	0.110899
chr17	30119271	30119371	6587413	0	+	0.38	(0.378,0.408]	chr17	640557	7	INTRON	INTRON	NSRP1	ENSG00000126653.18	ENST00000540900.7:ENST00000584423.5:ENST00000612959.4:ENST00000247026.10:ENST00000577289.6:ENST00000584154.5:ENST00000394826.8:ENST00000479218.6:ENST00000475652.5:ENST00000584317.5:ENST00000583301.5:ENST00000585881.5:ENST00000467446.6:ENST00000580103.6:ENST00000581048.5:ENST00000588614.1:ENST00000589608.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	37	2	2.46373	2.58778	2.71183	0.0382831	0.0170789	0.141795	0.110899
chr6	143175876	143175975	2976338	0	+	0.393939	(0.378,0.408]	chr6	279149	103	INTRON	INTRON	AIG1	ENSG00000146416.19	ENST00000367601.8:ENST00000447498.5:ENST00000646199.1:ENST00000357847.9:ENST00000629020.2:ENST00000275235.8:ENST00000494282.6:ENST00000458219.1:ENST00000470265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	37	2	2.46373	2.58778	2.71183	0.0382831	0.0170789	0.141795	0.110899
chr9	108921567	108921665	4310665	0	-	0.397959	(0.378,0.408]	chr9	396147	9	EXON_MRNA	EXON_MRNA:INTRON	ELP1	ENSG00000070061.16	ENST00000675765.1:ENST00000374647.10:ENST00000675078.1:ENST00000674948.1:ENST00000676121.1:ENST00000676429.1:ENST00000674704.1:ENST00000674938.1:ENST00000675602.1:ENST00000675215.1:ENST00000676044.1:ENST00000675979.1:ENST00000675325.1:ENST00000495759.6:ENST00000675893.1:ENST00000675943.1:ENST00000675535.1:ENST00000674890.1:ENST00000675233.1:ENST00000676086.1:ENST00000674836.1:ENST00000675406.1:ENST00000675748.1:ENST00000675400.1:ENST00000676237.1:ENST00000675825.1:ENST00000676424.1:ENST00000675647.1:ENST00000675877.1:ENST00000676416.1:ENST00000675052.1:ENST00000674535.1:ENST00000537196.1:ENST00000675566.1:ENST00000675507.1:ENST00000675727.1:ENST00000675711.1:ENST00000675458.1:ENST00000675335.1:ENST00000675321.1:ENST00000675938.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	37	2	2.46373	2.58778	2.71183	0.0382831	0.0170789	0.141795	0.110899
chr12	125018813	125018912	5245321	0	+	0.393939	(0.378,0.408]	chr12	498724	58	INTRON	INTRON	BRI3BP	ENSG00000184992.13	ENST00000341446.9:ENST00000671775.2:ENST00000672415.1	protein_coding	protein_coding	protein_coding	protein_coding	3	52	2	1.89621	2.587715	3.27922	0.0488044	0.00312717	0.173377	0.0499153
chrX	41334665	41334740	7645647	0	+	0.693333	(0.57,1]	chrX	782482	2	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	DDX3X	ENSG00000215301.11	ENST00000625837.2:ENST00000626301.2:ENST00000629785.2:ENST00000630255.2:ENST00000630370.2:ENST00000630858.2:ENST00000629496.3:ENST00000610559.5:ENST00000611546.2:ENST00000478993.5:ENST00000457138.7:ENST00000643821.1:ENST00000644876.2:ENST00000399959.7:ENST00000644074.1:ENST00000645338.1:ENST00000646196.1:ENST00000642793.1:ENST00000646940.1:ENST00000644307.1:ENST00000645561.1:ENST00000645080.1:ENST00000642597.1:ENST00000642722.1:ENST00000644109.1:ENST00000644958.1:ENST00000646122.1:ENST00000644513.1:ENST00000645589.1:ENST00000441189.4:ENST00000646822.1:ENST00000631641.2:ENST00000615742.4:ENST00000647219.1:ENST00000480592.6:ENST00000646223.1:ENST00000643963.1:ENST00000646319.1:ENST00000645783.1:ENST00000642624.1:ENST00000542215.5:ENST00000644073.1:ENST00000644677.1:ENST00000615313.5:ENST00000622373.1:ENST00000642322.1:ENST00000622198.5:ENST00000645120.1:ENST00000646107.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	27	2	2.50742	2.587715	2.66801	0.0169968	0.00631173	0.110899	0.0687526
chr8	108240998	108241098	4023197	0	-	0.3	(0.28,0.32]	chr8	367680	10	EXON_MRNA	EXON_MRNA:INTRON	EIF3E	ENSG00000104408.11	ENST00000678042.1:ENST00000678773.1:ENST00000677409.1:ENST00000676892.1:ENST00000523674.2:ENST00000677674.1:ENST00000220849.10:ENST00000678937.1:ENST00000677084.1:ENST00000676706.1:ENST00000518100.6:ENST00000677040.1:ENST00000676698.1:ENST00000522352.6:ENST00000521297.2:ENST00000677501.1:ENST00000519030.6:ENST00000519627.2:ENST00000518345.2:ENST00000522445.6:ENST00000678334.1:ENST00000678023.1:ENST00000678797.1:ENST00000677614.1:ENST00000676642.1:ENST00000677965.1:ENST00000678901.1:ENST00000678243.1:ENST00000676663.1:ENST00000679198.1:ENST00000521614.6:ENST00000678004.1:ENST00000678881.1:ENST00000677590.1:ENST00000677272.1:ENST00000676530.1:ENST00000677746.1:ENST00000676931.1:ENST00000677447.1:ENST00000676548.1:ENST00000676487.1:ENST00000521440.6:ENST00000518442.5:ENST00000522887.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	64	2	2.32871	2.58771	2.84671	0.0581621	0.00216662	0.167723	0.0434015
chr10	73059971	73060071	4647472	0	-	0.33	(0.32,0.35]	chr10	427530	60	INTRON	INTRON	P4HA1	ENSG00000122884.13	ENST00000394890.7:ENST00000307116.6:ENST00000373008.6:ENST00000440381.5:ENST00000263556.3	protein_coding	protein_coding	protein_coding	protein_coding	8	102	2	1.78925	2.587685	3.38612	0.0082586	0.00249604	0.0813266	0.0446195
chr3	172061126	172061226	1559759	0	+	0.35	(0.32,0.35]	chr3	161527	138	INTRON	INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000421757.5:ENST00000469491.5:ENST00000336824.8:ENST00000423424.5:ENST00000416957.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	56	2	1.94202	2.587665	3.23331	0.0486128	0.00315414	0.153946	0.0515261
chr6	80344099	80344198	2910371	0	+	0.515152	(0.476,0.515]	chr6	274876	4	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	BCKDHB	ENSG00000083123.15	ENST00000356489.9:ENST00000320393.9:ENST00000491328.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	94	2	2.45107	2.58764	2.72421	0.00301722	0.00107964	0.0507519	0.0302522
chr7	111414795	111414895	3622634	0	-	0.34	(0.32,0.35]	chr7	337108	220	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000452895.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding	3	56	2	2.04237	2.58757	3.13277	0.0375542	0.00458313	0.140222	0.0622676
chr16	18085893	18085993	6453492	0	-	0.44	(0.408,0.44]	chr16	621960	821	INTRON	INTRON	ENSG00000259929:ENSG00000260242	ENSG00000259929.5:ENSG00000260242.1	ENST00000567304.1:ENST00000563866.1	lncRNA	lncRNA	lncRNA	lncRNA	3	48	2	2.33431	2.5875399999999997	2.84077	0.0132196	0.0129219	0.0990564	0.0940535
chr12	106961170	106961269	5218561	0	+	0.353535	(0.35,0.378]	chr12	493944	14	INTRON	INTRON	TMEM263	ENSG00000151135.10	ENST00000548125.5:ENST00000547242.5:ENST00000551489.5:ENST00000550344.5:ENST00000280756.9:ENST00000547081.1	protein_coding	protein_coding	protein_coding	protein_coding	5	75	2	2.33792	2.587505	2.83709	0.01435	0.0024225	0.0966737	0.0454587
chr2	38750823	38750901	1099880	0	-	0.615385	(0.57,1]	chr2	118016	1	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	SRSF7	ENSG00000115875.19	ENST00000446327.6:ENST00000313117.11:ENST00000425778.5:ENST00000425941.6:ENST00000409276.5:ENST00000431066.5:ENST00000443213.5:ENST00000415527.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	73	2	2.28103	2.5875	2.89397	0.0151554	1.11276e-5	0.108535	0.00263978
chr10	102268014	102268114	4512868	0	+	0.39	(0.378,0.408]	chr10	415698	75	INTRON	INTRON	GBF1	ENSG00000107862.7	ENST00000676513.1:ENST00000676939.1:ENST00000677439.1:ENST00000677240.1:ENST00000677618.1:ENST00000679155.1:ENST00000679280.1:ENST00000678036.1:ENST00000678476.1:ENST00000678504.1:ENST00000677247.1:ENST00000677655.1:ENST00000678351.1:ENST00000679238.1:ENST00000677487.1:ENST00000677506.1:ENST00000678666.1:ENST00000676560.1:ENST00000673650.1:ENST00000674034.1:ENST00000369983.5:ENST00000679003.1:ENST00000678486.1:ENST00000676682.1:ENST00000676807.1:ENST00000676993.1:ENST00000678575.1:ENST00000677522.1:ENST00000678293.1:ENST00000679087.1:ENST00000677683.1:ENST00000676861.1:ENST00000677491.1:ENST00000677461.1:ENST00000677871.1:ENST00000677431.1:ENST00000678222.1:ENST00000678826.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	50	2	2.00398	2.587435	3.17089	0.0393906	0.00357279	0.143072	0.0548435
chr17	36582573	36582670	6602240	0	+	0.350515	(0.35,0.378]	chr17	642583	2	INTRON	INTRON	GGNBP2	ENSG00000278311.5	ENST00000613102.5:ENST00000618837.4:ENST00000619573.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	39	2	2.24535	2.587435	2.92952	0.0647516	0.00881187	0.179192	0.084878
chr3	31582583	31582682	1391896	0	+	0.353535	(0.35,0.378]	chr3	145698	21	INTRON	INTRON	STT3B	ENSG00000163527.10	ENST00000453168.5:ENST00000295770.4:ENST00000423527.5:ENST00000462235.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	39	2	2.24535	2.587435	2.92952	0.0647516	0.00881187	0.179192	0.084878
chr8	63202302	63202402	3773330	0	+	0.37	(0.35,0.378]	chr8	349948	134	INTRON	INTRON	YTHDF3	ENSG00000185728.17	ENST00000617200.1:ENST00000623280.3:ENST00000539294.6:ENST00000621957.4:ENST00000517371.5:ENST00000615676.1:ENST00000621413.4:ENST00000621890.4:ENST00000621820.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	39	2	2.24535	2.587435	2.92952	0.0647516	0.00881187	0.179192	0.084878
chrX	154093585	154093682	7913059	0	-	0.381443	(0.378,0.408]	chrX	805648	9	INTRON	INTRON	MECP2	ENSG00000169057.24	ENST00000303391.11:ENST00000453960.7:ENST00000628176.2:ENST00000407218.5:ENST00000369957.5:ENST00000631210.1:ENST00000496908.5:ENST00000415944.3:ENST00000630151.2:ENST00000676382.1:ENST00000637533.1:ENST00000627864.1:ENST00000637467.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	50	2	2.00398	2.587435	3.17089	0.0393906	0.00357279	0.143072	0.0548435
chr19	12792915	12793015	7022127	0	+	0.6	(0.57,1]	chr19	698184	2	UTR3	UTR3:EXON_MRNA	JUNB	ENSG00000171223.6	ENST00000302754.6	protein_coding	protein_coding	protein_coding	protein_coding	6	49	2	2.46083	2.58737	2.71391	0.00255312	6.82348e-4	0.0466386	0.0239168
chr14	81728620	81728720	5938353	0	-	0.48	(0.476,0.515]	chr14	564368	4	SS3_PROX	SS3_PROX:INTRON	LINC02311	ENSG00000258718.3	ENST00000648079.1:ENST00000556819.1	lncRNA	lncRNA	lncRNA	lncRNA	3	50	2	2.40608	2.5873150000000003	2.76855	0.0425709	0.00244302	0.148082	0.0456956
chr12	122081065	122081165	5239885	0	+	0.31	(0.28,0.32]	chr12	497496	14	INTRON	INTRON	MLXIP	ENSG00000175727.14	ENST00000319080.12	protein_coding	protein_coding	protein_coding	protein_coding	5	100	2	2.25298	2.5872	2.92142	0.00791652	0.00234443	0.0797304	0.0434875
chr4	70910944	70911044	1970591	0	+	0.52	(0.515,0.57]	chr4	197571	80	INTRON	INTRON	MOB1B	ENSG00000173542.9	ENST00000502869.5:ENST00000509041.5:ENST00000309395.7:ENST00000396051.2:ENST00000511449.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	50	2	2.27116	2.587135	2.90311	0.0094233	0.00601759	0.0817766	0.0700813
chr3	47661555	47661647	1683846	0	-	0.358696	(0.35,0.378]	chr3	172001	1	SS3_PROX	SS3_PROX:INTRON	SMARCC1	ENSG00000173473.11	ENST00000254480.10:ENST00000425518.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	104	2	2.49532	2.58703	2.67874	0.00373022	0.00165224	0.0561984	0.0369207
chr4	126565808	126565908	2236367	0	-	0.28	[0,0.28]	chr4	219023	1003	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	8	126	2	1.72637	2.587015	3.44766	0.0130163	0.00294011	0.0992959	0.0483547
chr2	112651262	112651359	852116	0	+	0.371134	(0.35,0.378]	chr2	95574	32	INTRON	INTRON	SLC20A1	ENSG00000144136.11	ENST00000272542.8:ENST00000423633.5:ENST00000498224.5:ENST00000433924.5:ENST00000456264.5:ENST00000413135.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	135	2	1.97779	2.586995	3.1962	0.00252327	5.54078e-4	0.0465056	0.0216641
chr6	157867046	157867146	3016201	0	+	0.42	(0.408,0.44]	chr6	281354	1	SS3_PROX	SS3_PROX:INTRON	SNX9	ENSG00000130340.17	ENST00000614703.4:ENST00000614800.4:ENST00000680863.1:ENST00000679814.1:ENST00000680464.1:ENST00000681186.1:ENST00000679732.1:ENST00000681183.1:ENST00000681534.1:ENST00000681651.1:ENST00000680089.1:ENST00000680078.1:ENST00000680974.1:ENST00000680095.1:ENST00000680015.1:ENST00000681138.1:ENST00000392185.8:ENST00000679790.1:ENST00000680495.1:ENST00000679691.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	65	2	2.26792	2.5869600000000004	2.906	0.0179973	0.00131817	0.106756	0.0333932
chr7	151501367	151501466	3674740	0	-	0.323232	(0.32,0.35]	chr7	341207	28	INTRON	INTRON	RHEB	ENSG00000106615.10	ENST00000262187.10:ENST00000472642.5:ENST00000478470.5:ENST00000496004.5:ENST00000470370.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	116	2	1.66804	2.5869549999999997	3.50587	0.0271264	7.86316e-5	0.123904	0.00738014
chr12	111682490	111682567	5413654	0	-	0.350649	(0.35,0.378]	chr12	517013	3	INTRON	INTRON	BRAP	ENSG00000089234.16	ENST00000419234.9:ENST00000327551.6	protein_coding	protein_coding	protein_coding	protein_coding	2	39	2	2.57049	2.58695	2.60341	0.0275785	0.0262669	0.133676	0.123904
chr22	16616346	16616446	7473506	0	+	0.36	(0.35,0.378]	chr22	761982	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TPTEP1:ENSG00000267338	ENSG00000100181.22:ENSG00000267338.1	ENST00000558085.6:ENST00000400593.6:ENST00000426585.5:ENST00000438850.1	lncRNA	lncRNA	lncRNA:transcribed_unprocessed_pseudogene	lncRNA:processed_transcript	2	39	2	2.57049	2.58695	2.60341	0.0275785	0.0262669	0.133676	0.123904
chr5	66018922	66019022	2371778	0	+	0.37	(0.35,0.378]	chr5	228522	38	INTRON	INTRON	ERBIN	ENSG00000112851.15	ENST00000380943.6:ENST00000416865.6:ENST00000380935.5:ENST00000284037.10:ENST00000380938.6:ENST00000511297.5:ENST00000506030.5:ENST00000508515.1	protein_coding	protein_coding	protein_coding	protein_coding	2	39	2	2.57049	2.58695	2.60341	0.0275785	0.0262669	0.133676	0.123904
chr8	52627140	52627238	3950208	0	-	0.469388	(0.44,0.476]	chr8	362272	20	INTRON	INTRON	RB1CC1	ENSG00000023287.13	ENST00000025008.10:ENST00000435644.6:ENST00000521611.1:ENST00000519912.1:ENST00000522957.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	77	2	2.50105	2.5869350000000004	2.67282	0.00433875	0.00240161	0.0579868	0.0452061
chr1	26706131	26706230	51272	0	+	0.383838	(0.378,0.408]	chr1	6542	82	INTRON	INTRON	ARID1A	ENSG00000117713.21	ENST00000430799.7:ENST00000324856.13:ENST00000637465.1:ENST00000457599.6	protein_coding	protein_coding	protein_coding	protein_coding	8	123	2	2.32375	2.58692	2.85009	0.00134834	6.76594e-4	0.0338207	0.0238119
chr13	37004030	37004127	5468904	0	+	0.515464	(0.515,0.57]	chr13	523995	6	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	EXOSC8	ENSG00000120699.14	ENST00000489088.5:ENST00000470423.2:ENST00000684866.1:ENST00000686701.1:ENST00000488108.6:ENST00000689744.1:ENST00000692143.1:ENST00000464235.6:ENST00000239893.9:ENST00000693100.1:ENST00000685624.1:ENST00000389704.4:ENST00000686729.1:ENST00000692477.1:ENST00000474661.5:ENST00000686472.1:ENST00000490537.6:ENST00000690774.1:ENST00000688436.1:ENST00000692787.1:ENST00000685563.1:ENST00000693733.1:ENST00000687482.1:ENST00000685643.1:ENST00000690673.1:ENST00000488779.6:ENST00000689948.1:ENST00000688064.1:ENST00000692761.1:ENST00000687944.1:ENST00000692588.1:ENST00000691611.1:ENST00000692636.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	51	2	2.41022	2.58688	2.76354	0.0147344	0.00332441	0.0983813	0.0528673
chr6	133980946	133981040	2962037	0	+	0.361702	(0.35,0.378]	chr6	278523	3	INTRON	INTRON	TBPL1	ENSG00000028839.10	ENST00000613034.4:ENST00000416965.5:ENST00000367871.5:ENST00000237264.9:ENST00000367869.1	protein_coding	protein_coding	protein_coding	protein_coding	6	102	2	2.26428	2.586865	2.90945	0.00831504	3.57589e-4	0.0774402	0.0169202
chr2	167928019	167928119	1259083	0	-	0.5	(0.476,0.515]	chr2	133340	269	INTRON	INTRON	B3GALT1-AS1	ENSG00000235335.3	ENST00000430546.2:ENST00000657553.1:ENST00000670221.1:ENST00000436982.2	lncRNA	lncRNA	lncRNA	lncRNA	17	248	2	2.55827	2.5867199999999997	2.61517	1.41912e-4	4.10903e-5	0.010873	0.00519615
chr11	63975094	63975194	4801822	0	+	0.35	(0.32,0.35]	chr11	445185	3	SS5_PROX	SS5_PROX:INTRON	COX8A	ENSG00000176340.4	ENST00000314133.4	protein_coding	protein_coding	protein_coding	protein_coding	5	78	2	1.59364	2.586715	3.57979	0.0413426	0.00118589	0.161557	0.0315652
chr6	17653219	17653318	3065665	0	-	0.434343	(0.408,0.44]	chr6	284824	9	INTRON	INTRON	NUP153	ENSG00000124789.12	ENST00000613258.4:ENST00000537253.5:ENST00000262077.3	protein_coding	protein_coding	protein_coding	protein_coding	13	194	2	2.41126	2.5866350000000002	2.76201	7.3572e-4	3.4952e-5	0.02495	0.00471138
chr2	191679328	191679428	960372	0	+	0.46	(0.44,0.476]	chr2	104281	2	SS5_PROX	SS5_PROX:INTRON	NABP1	ENSG00000173559.15	ENST00000491331.5:ENST00000307834.9:ENST00000674262.1:ENST00000674360.1:ENST00000674406.1:ENST00000674414.1:ENST00000410026.7:ENST00000674172.1:ENST00000674187.1:ENST00000307849.7:ENST00000425611.9:ENST00000462712.5:ENST00000451500.5:ENST00000409510.5:ENST00000435931.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	48	2	2.14573	2.58662	3.02751	0.0238593	0.00715968	0.129075	0.0723634
chr7	135420556	135420656	3648064	0	-	0.32	(0.28,0.32]	chr7	339173	49	INTRON	INTRON	CNOT4	ENSG00000080802.20	ENST00000541284.6:ENST00000451834.5:ENST00000423368.6:ENST00000361528.8:ENST00000414802.5:ENST00000428680.6:ENST00000315544.6	protein_coding	protein_coding	protein_coding	protein_coding	7	134	2	2.47203	2.586595	2.70116	0.0114089	2.6235e-4	0.0886611	0.0143317
chr7	74193574	74193671	3332424	0	+	0.350515	(0.35,0.378]	chr7	310058	10	EXON_MRNA	EXON_MRNA:INTRON	EIF4H	ENSG00000106682.16	ENST00000678438.1:ENST00000677998.1:ENST00000495187.2:ENST00000265753.13:ENST00000353999.6:ENST00000677570.1:ENST00000677681.1:ENST00000678815.1:ENST00000679266.1:ENST00000679287.1:ENST00000678341.1:ENST00000679161.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	148	2	2.30635	2.58652	2.86669	0.00221287	1.61757e-4	0.0419207	0.0109774
chr5	119331476	119331576	2462226	0	+	0.49	(0.476,0.515]	chr5	235848	148	INTRON	INTRON	TNFAIP8	ENSG00000145779.8	ENST00000274456.6:ENST00000388882.5	protein_coding	protein_coding	protein_coding	protein_coding	3	50	2	1.8388	2.58648	3.33416	0.0564473	0.00230489	0.184423	0.0428247
chr3	14472213	14472313	1370108	0	+	0.44	(0.408,0.44]	chr3	144375	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	SLC6A6	ENSG00000131389.18	ENST00000613060.4:ENST00000618278.4:ENST00000610642.4:ENST00000649500.1:ENST00000622186.5:ENST00000452151.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	15	200	2	2.23942	2.586445	2.93347	2.5236e-4	1.59974e-4	0.0141412	0.0115755
chr16	58605104	58605204	6496135	0	-	0.4	(0.378,0.408]	chr16	628638	52	INTRON	INTRON	CNOT1	ENSG00000125107.19	ENST00000317147.10:ENST00000569240.5:ENST00000567188.5:ENST00000441024.6:ENST00000565605.5:ENST00000564557.1:ENST00000569916.1:ENST00000565697.1:ENST00000569020.5:ENST00000568158.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	50	2	1.94681	2.5864	3.22599	0.0457723	0.00288652	0.149888	0.0494641
chr14	50308199	50308299	5889302	0	-	0.53	(0.515,0.57]	chr14	559085	48	INTRON	INTRON	L2HGDH	ENSG00000087299.12	ENST00000261699.8:ENST00000267436.9:ENST00000421284.7:ENST00000555423.5:ENST00000555610.1:ENST00000554191.5:ENST00000556393.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	31	2	2.34087	2.586375	2.83188	0.0469761	0.0108207	0.151917	0.0920575
chr16	74603060	74603160	6525292	0	-	0.52	(0.515,0.57]	chr16	631842	399	INTRON	INTRON	GLG1	ENSG00000090863.12	ENST00000205061.9:ENST00000422840.7:ENST00000447066.6:ENST00000562090.5:ENST00000567951.5:ENST00000627032.2:ENST00000565260.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	31	2	2.34087	2.586375	2.83188	0.0469761	0.0108207	0.151917	0.0920575
chr22	41630226	41630325	7524275	0	+	0.545455	(0.515,0.57]	chr22	769068	16	INTRON	INTRON	XRCC6	ENSG00000196419.13	ENST00000428575.6:ENST00000402580.7:ENST00000360079.8:ENST00000359308.8:ENST00000405878.5:ENST00000405506.2	protein_coding	protein_coding	protein_coding	protein_coding	2	31	2	2.34087	2.586375	2.83188	0.0469761	0.0108207	0.151917	0.0920575
chr9	137454874	137454943	4377317	0	-	0.57971	(0.57,1]	chr9	403589	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NSMF	ENSG00000165802.23	ENST00000371475.9:ENST00000371473.7:ENST00000371474.7:ENST00000437259.5:ENST00000371472.6:ENST00000265663.12	protein_coding	protein_coding	protein_coding	protein_coding	4	31	2	2.07956	2.5863449999999997	3.09313	0.013114	0.00369015	0.0998629	0.0535094
chr11	47517176	47517276	4950041	0	-	0.43	(0.408,0.44]	chr11	464238	24	INTRON	INTRON	CELF1	ENSG00000149187.19	ENST00000310513.10:ENST00000687097.1:ENST00000531165.5:ENST00000532048.5:ENST00000530151.5:ENST00000525841.5:ENST00000528434.5:ENST00000543178.5:ENST00000526419.1:ENST00000528538.5:ENST00000526277.1	protein_coding	protein_coding	protein_coding	protein_coding	3	48	2	2.27464	2.586295	2.89795	0.0158016	0.0110735	0.109464	0.0873897
chr13	29528541	29528641	5567709	0	-	0.41	(0.408,0.44]	chr13	532197	39	INTRON	INTRON	SLC7A1	ENSG00000139514.13	ENST00000380752.10	protein_coding	protein_coding	protein_coding	protein_coding	3	48	2	2.27464	2.586295	2.89795	0.0158016	0.0110735	0.109464	0.0873897
chr1	246321063	246321163	678846	0	-	0.4	(0.378,0.408]	chr1	79737	152	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000453676.5:ENST00000462422.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	50	2	2.05897	2.586285	3.1136	0.0339294	0.00443339	0.134508	0.061054
chr12	20060	20159	5253842	0	-	0.393939	(0.378,0.408]	chr12	499871	12	INTRON	INTRON	WASH8P	ENSG00000226210.3	ENST00000400706.3	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	3	50	2	2.05897	2.586285	3.1136	0.0339294	0.00443339	0.134508	0.061054
chr7	23354273	23354372	3502493	0	-	0.40404	(0.378,0.408]	chr7	326862	23	INTRON	INTRON	IGF2BP3	ENSG00000136231.14	ENST00000258729.8:ENST00000421467.6:ENST00000468263.5:ENST00000492771.5:ENST00000479504.5:ENST00000466809.6:ENST00000491719.5:ENST00000465058.5:ENST00000469723.5:ENST00000474105.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	50	2	2.05897	2.586285	3.1136	0.0339294	0.00443339	0.134508	0.061054
chr16	50302662	50302761	6348968	0	+	0.585859	(0.57,1]	chr16	609453	8	INTRON	INTRON	ADCY7	ENSG00000121281.13	ENST00000394697.7:ENST00000673801.1:ENST00000566433.6:ENST00000673973.1:ENST00000537579.5:ENST00000254235.7:ENST00000567277.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	31	2	1.98953	2.586265	3.183	0.0182848	0.00254356	0.115629	0.0448135
chr5	160105148	160105248	2759657	0	-	0.45	(0.44,0.476]	chr5	260436	107	INTRON	INTRON	PWWP2A	ENSG00000170234.13	ENST00000456329.7:ENST00000523662.1:ENST00000307063.9:ENST00000520662.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	88	2	2.25992	2.58622	2.91252	0.00324123	0.00164027	0.0524329	0.0369207
chr17	82156266	82156364	6851863	0	-	0.346939	(0.32,0.35]	chr17	678982	28	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CCDC57	ENSG00000176155.21	ENST00000694881.1:ENST00000389641.9:ENST00000694882.1:ENST00000665763.1:ENST00000578910.2:ENST00000419322.6:ENST00000327026.7:ENST00000475635.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	118	2	2.18777	2.586185	2.9846	0.00951422	4.60773e-4	0.0863913	0.0198052
chr3	177032451	177032551	1870760	0	-	0.31	(0.28,0.32]	chr3	187287	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TBL1XR1	ENSG00000177565.18	ENST00000636864.1:ENST00000457928.7:ENST00000430069.5:ENST00000637659.1:ENST00000673974.1:ENST00000631253.2:ENST00000352800.10:ENST00000422442.6:ENST00000626758.1:ENST00000636348.1:ENST00000635757.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	83	2	2.14002	2.58612	3.03222	0.0304107	9.72587e-4	0.130461	0.0287313
chr16	343749	343849	6426767	0	-	0.57	(0.515,0.57]	chr16	617500	287	INTRON	INTRON	AXIN1	ENSG00000103126.15	ENST00000262320.8:ENST00000461023.5:ENST00000354866.7:ENST00000481769.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	31	2	2.56306	2.5860250000000002	2.60899	0.0247751	0.0232669	0.131869	0.118148
chr9	4800608	4800707	4094942	0	+	0.363636	(0.35,0.378]	chr9	373155	70	INTRON	INTRON	RCL1	ENSG00000120158.12	ENST00000381750.9:ENST00000381732.3:ENST00000442869.5:ENST00000473230.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	52	2	2.44701	2.58599	2.72497	0.0198266	0.00900997	0.109608	0.0851009
chr19	45110117	45110217	7079208	0	+	0.51	(0.476,0.515]	chr19	708078	13	INTRON	INTRON	PPP1R37	ENSG00000104866.11	ENST00000544069.2:ENST00000221462.9:ENST00000544897.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	107	2	1.82399	2.585945	3.3479	0.00866166	2.07787e-4	0.0842392	0.0131276
chr1	67416334	67416433	477485	0	-	0.383838	(0.378,0.408]	chr1	57471	6	INTRON	INTRON	SERBP1	ENSG00000142864.15	ENST00000370994.8:ENST00000361219.11:ENST00000370995.6:ENST00000370990.5:ENST00000493607.1:ENST00000462814.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	77	2	1.44787	2.5859199999999998	3.72397	0.0496837	3.23378e-4	0.156383	0.0159645
chr3	72446395	72446495	1745919	0	-	0.34	(0.32,0.35]	chr3	177370	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	RYBP	ENSG00000163602.12	ENST00000477973.5	protein_coding	protein_coding	protein_coding	protein_coding	9	151	2	2.35316	2.585835	2.81851	9.81116e-4	8.28744e-4	0.0285804	0.0263691
chr3	14162719	14162818	1619007	0	-	0.313131	(0.28,0.32]	chr3	167323	25	INTRON	INTRON	XPC	ENSG00000154767.15	ENST00000285021.12:ENST00000476581.6:ENST00000477324.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	83	2	2.51426	2.585795	2.65733	0.00781326	0.0061571	0.0788246	0.0676501
chr6	111284004	111284104	2940026	0	+	0.37	(0.35,0.378]	chr6	276924	41	INTRON	INTRON	MFSD4B	ENSG00000173214.7	ENST00000673446.1:ENST00000673245.1:ENST00000666581.2	protein_coding	processed_transcript	protein_coding	processed_transcript	3	52	2	2.23043	2.58577	2.94111	0.0187487	0.0104563	0.117523	0.0855102
chr10	119589624	119589721	4705959	0	-	0.237113	[0,0.28]	chr10	434236	10	INTRON	INTRON	TIAL1	ENSG00000151923.18	ENST00000369093.6:ENST00000436547.7:ENST00000489822.5:ENST00000497671.5:ENST00000470781.5:ENST00000462373.1:ENST00000479729.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	52	2	2.43761	2.585725	2.73384	0.0423864	0.0246308	0.161744	0.12011
chr11	63957123	63957221	4801812	0	+	0.193878	[0,0.28]	chr11	445179	28	UTR3	UTR3:EXON_MRNA	NAA40	ENSG00000110583.13	ENST00000338447.10:ENST00000377793.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	52	2	2.43761	2.585725	2.73384	0.0423864	0.0246308	0.161744	0.12011
chrX	154707240	154707340	7914878	0	-	0.27	[0,0.28]	chrX	806091	68	INTRON	INTRON	GAB3	ENSG00000160219.12	ENST00000496390.5:ENST00000424127.3:ENST00000369575.7:ENST00000369568.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	52	2	2.43761	2.585725	2.73384	0.0423864	0.0246308	0.161744	0.12011
chr1	171498794	171498893	253347	0	+	0.50505	(0.476,0.515]	chr1	30096	127	INTRON	INTRON	PRRC2C	ENSG00000117523.18	ENST00000647382.2:ENST00000367742.7:ENST00000476522.5:ENST00000338920.8:ENST00000467601.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	19	229	2	1.93325	2.585715	3.23818	8.18359e-4	2.54589e-5	0.0261477	0.00416607
chrX	3852135	3852235	7747105	0	-	0.3	(0.28,0.32]	chrX	793099	14	INTRON	INTRON	ENSG00000285756	ENSG00000285756.2	ENST00000648217.1:ENST00000650456.1:ENST00000657698.1	lncRNA	lncRNA	lncRNA	lncRNA	3	63	2	2.36963	2.5856	2.80157	0.0157022	0.0147132	0.106558	0.101453
chr5	65533973	65534073	2633994	0	-	0.48	(0.476,0.515]	chr5	250161	43	INTRON	INTRON	CENPK	ENSG00000123219.13	ENST00000514814.5:ENST00000396679.6:ENST00000242872.7:ENST00000508421.5:ENST00000510693.5:ENST00000506282.6:ENST00000511841.5:ENST00000505960.5:ENST00000509397.5:ENST00000515497.5:ENST00000515873.5:ENST00000510768.5:ENST00000502997.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	59	2	2.09697	2.5855949999999996	3.07422	0.0136924	0.00506023	0.0949306	0.0646039
chr12	122320240	122320338	5440632	0	-	0.316327	(0.28,0.32]	chr12	520344	5	INTRON	INTRON	CLIP1	ENSG00000130779.22	ENST00000361654.8:ENST00000358808.6:ENST00000302528.11:ENST00000545889.6:ENST00000620786.5:ENST00000537178.5:ENST00000648993.1:ENST00000537123.2	protein_coding	protein_coding	protein_coding	protein_coding	4	73	2	1.90249	2.585495	3.2685	0.0261803	0.00432734	0.133676	0.0579331
chr20	3994871	3994971	7309201	0	-	0.31	(0.28,0.32]	chr20	744300	201	INTRON	INTRON	RNF24	ENSG00000101236.17	ENST00000336095.10:ENST00000358395.11:ENST00000545616.2	protein_coding	protein_coding	protein_coding	protein_coding	4	73	2	1.90249	2.585495	3.2685	0.0261803	0.00432734	0.133676	0.0579331
chr17	64500882	64500934	6815813	0	-	0.326923	(0.32,0.35]	chr17	673795	1	EXON_MRNA	EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DDX5	ENSG00000108654.16	ENST00000225792.10:ENST00000678890.1:ENST00000676601.1:ENST00000676575.1:ENST00000676969.1:ENST00000678810.1:ENST00000585317.2:ENST00000678110.1:ENST00000580026.6:ENST00000678757.1:ENST00000676581.1:ENST00000676785.1:ENST00000585111.2:ENST00000577922.6:ENST00000450599.7:ENST00000678814.1:ENST00000677726.1:ENST00000583212.2:ENST00000579461.2:ENST00000540698.6:ENST00000581230.5:ENST00000581693.5:ENST00000582326.2:ENST00000578491.2:ENST00000578804.5:ENST00000578758.5:ENST00000581237.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	22	377	2	2.34158	2.58545	2.82932	2.99118e-4	1.51569e-5	0.0160513	0.00293131
chr14	31017134	31017234	5857781	0	-	0.36	(0.35,0.378]	chr14	556512	20	INTRON	INTRON	STRN3	ENSG00000196792.12	ENST00000355683.9:ENST00000357479.10:ENST00000555358.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	107	2	2.17486	2.58544	2.99602	0.00289708	0.00133795	0.0494641	0.0335491
chr10	69147723	69147823	4444786	0	+	0.54	(0.515,0.57]	chr10	410023	143	INTRON	INTRON	VPS26A	ENSG00000122958.15	ENST00000373382.5:ENST00000395098.5:ENST00000489656.5:ENST00000263559.11:ENST00000497564.5:ENST00000490696.5:ENST00000467852.1:ENST00000489794.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	44	2	2.34087	2.5854049999999997	2.82994	0.0469761	0.00168661	0.151917	0.0381778
chr6	87157649	87157749	2913277	0	+	0.37	(0.35,0.378]	chr6	275276	15	INTRON	INTRON	ZNF292	ENSG00000188994.13	ENST00000392985.3:ENST00000369577.8:ENST00000369578.6:ENST00000518845.1:ENST00000339907.8:ENST00000496806.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	118	2	2.30859	2.5853200000000003	2.86205	0.00276702	7.01936e-4	0.0486894	0.024224
chr20	41050014	41050114	7273718	0	+	0.49	(0.476,0.515]	chr20	739216	202	INTRON	INTRON	TOP1	ENSG00000198900.7	ENST00000361337.3:ENST00000681113.1:ENST00000681058.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	113	2	2.50945	2.585285	2.66112	0.0044598	2.84218e-4	0.0592169	0.0150568
chr7	101949801	101949900	3367691	0	+	0.565657	(0.515,0.57]	chr7	315229	168	INTRON	INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000497815.5:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000558469.5:ENST00000560541.5:ENST00000558836.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	55	2	2.43783	2.585205	2.73258	0.00916404	0.00260192	0.0812949	0.0470772
chr3	172062324	172062424	1559771	0	+	0.55	(0.515,0.57]	chr3	161527	150	INTRON	INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000421757.5:ENST00000469491.5:ENST00000336824.8:ENST00000423424.5:ENST00000416957.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	55	2	2.48902	2.5851699999999997	2.68132	0.00760558	0.00324198	0.0749571	0.0524329
chrX	154767672	154767768	7739335	0	+	0.3125	(0.28,0.32]	chrX	792405	3	SS5_PROX	SS5_PROX:INTRON	DKC1	ENSG00000130826.19	ENST00000620277.4:ENST00000413910.6:ENST00000426673.6:ENST00000696575.1:ENST00000369550.10:ENST00000696579.1:ENST00000696578.1:ENST00000696577.1:ENST00000696576.1:ENST00000696580.1:ENST00000696581.1:ENST00000696582.1:ENST00000696583.1:ENST00000696627.1:ENST00000696628.1:ENST00000696584.1:ENST00000696585.1:ENST00000696586.1:ENST00000696587.1:ENST00000696588.1:ENST00000437719.5:ENST00000412124.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	99	2	1.99988	2.58516	3.17044	0.0228757	5.14622e-4	0.118056	0.0203753
chr19	2136510	2136610	7115396	0	-	0.44	(0.408,0.44]	chr19	715252	1	SS5_PROX	SS5_PROX:INTRON	AP3D1	ENSG00000065000.19	ENST00000643116.3:ENST00000345016.9:ENST00000643010.1:ENST00000591284.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	178	2	2.3863	2.585095	2.78389	3.57398e-4	1.74121e-4	0.0169202	0.0121285
chr7	36433731	36433831	3307463	0	+	0.33	(0.32,0.35]	chr7	307191	50	INTRON	INTRON	ANLN	ENSG00000011426.11	ENST00000396068.6:ENST00000265748.7:ENST00000428612.5:ENST00000457743.1	protein_coding	protein_coding	protein_coding	protein_coding	3	56	2	1.88909	2.58508	3.28107	0.0553737	0.00262488	0.165463	0.0470772
chr3	152358505	152358605	1535886	0	+	0.33	(0.32,0.35]	chr3	160003	229	INTRON	INTRON	MBNL1	ENSG00000152601.18	ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000495875.6:ENST00000324210.10:ENST00000493459.5:ENST00000459747.1:ENST00000460591.5:ENST00000545754.5:ENST00000357472.7:ENST00000324196.9:ENST00000498502.5:ENST00000463374.5:ENST00000485910.5:ENST00000465907.6:ENST00000492948.5:ENST00000485509.5:ENST00000464596.5	protein_coding	protein_coding	protein_coding	protein_coding	6	85	2	1.81892	2.5850400000000002	3.35116	0.0134787	0.00283808	0.101363	0.0473151
chr2	167868440	167868540	1258485	0	-	0.29	(0.28,0.32]	chr2	133328	52	INTRON	INTRON	B3GALT1-AS1	ENSG00000235335.3	ENST00000430546.2:ENST00000657553.1:ENST00000670221.1:ENST00000436982.2	lncRNA	lncRNA	lncRNA	lncRNA	8	151	2	2.40545	2.5850049999999998	2.76456	0.00147147	0.0011814	0.0348192	0.031662
chr6	31756591	31756672	2843661	0	+	0.333333	(0.32,0.35]	chr6	267819	1	EXON_LNCRNA	EXON_LNCRNA:INTRON	MSH5:MSH5-SAPCD1	ENSG00000204410.16:ENSG00000255152.8	ENST00000375755.8:ENST00000375750.9:ENST00000650702.1:ENST00000493662.6:ENST00000375703.7:ENST00000375740.7:ENST00000423982.6:ENST00000463144.5:ENST00000450148.5:ENST00000468602.5:ENST00000468136.5:ENST00000395853.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	135	2	1.85774	2.584905	3.31207	0.0061655	3.78985e-4	0.0712486	0.0180834
chr14	30964908	30965008	5857258	0	-	0.41	(0.408,0.44]	chr14	556508	5	INTRON	INTRON	STRN3	ENSG00000196792.12	ENST00000355683.9:ENST00000357479.10:ENST00000555358.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	162	2	2.52239	2.5848500000000003	2.64731	0.00126655	7.34287e-5	0.0325433	0.00714826
chr1	246872269	246872368	681339	0	-	0.525253	(0.515,0.57]	chr1	79915	41	INTRON	INTRON	AHCTF1	ENSG00000153207.16	ENST00000648844.2:ENST00000326225.3:ENST00000366508.5:ENST00000470300.5:ENST00000483900.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	66	2	2.53705	2.5847749999999996	2.6325	0.00439001	0.00186194	0.0585064	0.039946
chr1	8534024	8534124	370936	0	-	0.43	(0.408,0.44]	chr1	43499	81	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000400907.6:ENST00000656437.1:ENST00000659924.1:ENST00000480342.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	59	2	1.75791	2.584675	3.41144	0.0378795	0.00178336	0.157034	0.0379201
chr6	132784010	132784089	3222676	0	-	0.455696	(0.44,0.476]	chr6	299621	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	SLC18B1	ENSG00000146409.12	ENST00000275227.9:ENST00000647932.1:ENST00000650278.1:ENST00000650136.1:ENST00000650298.1:ENST00000367918.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	58	2	2.30673	2.58452	2.86231	0.012214	0.0055175	0.0910127	0.0672816
chr1	235500398	235500496	664422	0	-	0.489796	(0.476,0.515]	chr1	78647	17	INTRON	INTRON	B3GALNT2	ENSG00000162885.14	ENST00000366600.8:ENST00000675193.1:ENST00000676288.1:ENST00000612859.4:ENST00000313984.3:ENST00000494378.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	64	2	2.31726	2.584515	2.85177	0.015077	0.00169916	0.0994339	0.0381936
chr14	37072088	37072188	5877008	0	-	0.51	(0.476,0.515]	chr14	558013	1967	INTRON	INTRON	SLC25A21	ENSG00000183032.12	ENST00000331299.6:ENST00000555449.5:ENST00000557611.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	37	2	2.28264	2.5844699999999996	2.8863	0.0534132	0.0111679	0.179876	0.0877435
chr16	70570335	70570421	6385642	0	+	0.488372	(0.476,0.515]	chr16	614006	2	SS5_PROX	SS5_PROX:INTRON	SF3B3	ENSG00000189091.13	ENST00000302516.10:ENST00000565990.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	37	2	2.28264	2.5844699999999996	2.8863	0.0534132	0.0111679	0.179876	0.0877435
chr2	61216372	61216470	1127923	0	-	0.479592	(0.476,0.515]	chr2	121157	13	INTRON	INTRON	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000411912.5:ENST00000463046.5:ENST00000476716.5:ENST00000472689.5:ENST00000472706.5:ENST00000490527.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	37	2	2.28264	2.5844699999999996	2.8863	0.0534132	0.0111679	0.179876	0.0877435
chr21	46319557	46319653	7471647	0	-	0.489583	(0.476,0.515]	chr21	761758	2	INTRON	INTRON	C21orf58	ENSG00000160298.18	ENST00000397683.5:ENST00000397682.7:ENST00000291691.12:ENST00000397680.5:ENST00000445935.5:ENST00000475776.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	37	2	2.28264	2.5844699999999996	2.8863	0.0534132	0.0111679	0.179876	0.0877435
chr9	135904406	135904505	4372238	0	-	0.454545	(0.44,0.476]	chr9	402491	210	INTRON	INTRON	CAMSAP1	ENSG00000130559.19	ENST00000389532.9:ENST00000409386.3	protein_coding	protein_coding	protein_coding	protein_coding	3	48	2	1.96602	2.58446	3.2029	0.0426807	0.00308681	0.148082	0.0510391
chr1	111177329	111177427	184105	0	+	0.438776	(0.408,0.44]	chr1	20442	20	INTRON	INTRON	CEPT1	ENSG00000134255.15	ENST00000545121.5:ENST00000498239.5:ENST00000357172.9:ENST00000478042.5:ENST00000473474.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	36	2	2.27698	2.584455	2.89193	0.0583528	0.00950364	0.167723	0.0863579
chr2	60887907	60888006	785680	0	+	0.414141	(0.408,0.44]	chr2	88381	57	INTRON	INTRON	REL	ENSG00000162924.15	ENST00000295025.12:ENST00000394479.4	protein_coding	protein_coding	protein_coding	protein_coding	2	36	2	2.27698	2.584455	2.89193	0.0583528	0.00950364	0.167723	0.0863579
chr20	47642884	47642983	7282428	0	+	0.414141	(0.408,0.44]	chr20	740560	1	INTRON	INTRON	NCOA3	ENSG00000124151.19	ENST00000371998.8:ENST00000372004.7:ENST00000371997.3	protein_coding	protein_coding	protein_coding	protein_coding	2	36	2	2.27698	2.584455	2.89193	0.0583528	0.00950364	0.167723	0.0863579
chr20	56370469	56370569	7358661	0	-	0.41	(0.408,0.44]	chr20	750336	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	AURKA	ENSG00000087586.18	ENST00000395914.5:ENST00000395913.7:ENST00000312783.10:ENST00000395911.5:ENST00000395915.8:ENST00000347343.6:ENST00000371356.6:ENST00000395907.5	protein_coding	protein_coding	protein_coding	protein_coding	2	36	2	2.27698	2.584455	2.89193	0.0583528	0.00950364	0.167723	0.0863579
chr4	99933805	99933905	2209484	0	-	0.43	(0.408,0.44]	chr4	216403	28	INTRON	INTRON	DNAJB14	ENSG00000164031.17	ENST00000442697.7:ENST00000334223.6:ENST00000398991.3:ENST00000426476.5:ENST00000474664.5:ENST00000471738.1:ENST00000469942.1:ENST00000610281.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	36	2	2.27698	2.584455	2.89193	0.0583528	0.00950364	0.167723	0.0863579
chr3	152327518	152327618	1535574	0	+	0.53	(0.515,0.57]	chr3	159996	252	INTRON	INTRON	MBNL1	ENSG00000152601.18	ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000495875.6:ENST00000324210.10:ENST00000493459.5:ENST00000459747.1:ENST00000460591.5:ENST00000545754.5:ENST00000357472.7:ENST00000324196.9:ENST00000498502.5:ENST00000463374.5:ENST00000485910.5:ENST00000465907.6:ENST00000492948.5:ENST00000485509.5:ENST00000464596.5	protein_coding	protein_coding	protein_coding	protein_coding	16	199	2	2.50392	2.5844199999999997	2.66492	1.94962e-4	2.01505e-5	0.0127631	0.00348052
chr11	47506357	47506457	4949929	0	-	0.51	(0.476,0.515]	chr11	464225	1	SS5_PROX	SS5_PROX:INTRON	CELF1	ENSG00000149187.19	ENST00000310513.10:ENST00000687097.1:ENST00000531165.5:ENST00000532048.5:ENST00000530151.5:ENST00000525841.5:ENST00000528434.5:ENST00000543178.5:ENST00000526419.1:ENST00000528538.5:ENST00000526277.1	protein_coding	protein_coding	protein_coding	protein_coding	6	73	2	1.52755	2.58441	3.64127	0.0355377	6.42302e-4	0.151404	0.0231685
chr7	10576170	10576270	3482541	0	-	0.41	(0.408,0.44]	chr7	325772	142	INTRON	INTRON	MGC4859	ENSG00000283117.1	ENST00000634803.1	lncRNA	lncRNA	lncRNA	lncRNA	4	66	2	2.44674	2.58441	2.72208	0.00868283	0.00364449	0.0842798	0.0535094
chr16	22331238	22331336	6321894	0	+	0.459184	(0.44,0.476]	chr16	605284	23	INTRON	INTRON	POLR3E	ENSG00000058600.16	ENST00000615879.4:ENST00000299853.10:ENST00000564209.5:ENST00000418581.6:ENST00000359210.8:ENST00000564750.5:ENST00000563282.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	48	2	2.08277	2.58434	3.08591	0.0309998	0.00481262	0.13151	0.0638089
chr1	6544225	6544325	368015	0	-	0.44	(0.408,0.44]	chr1	43215	19	INTRON	INTRON	NOL9	ENSG00000162408.11	ENST00000377705.6:ENST00000464383.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	67	2	1.44993	2.584335	3.71874	0.0638951	3.17998e-4	0.177824	0.0159645
chr18	13023488	13023587	6876900	0	+	0.363636	(0.35,0.378]	chr18	681391	39	INTRON	INTRON	CEP192	ENSG00000101639.19	ENST00000325971.12:ENST00000506447.5:ENST00000589596.5:ENST00000513432.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	70	2	2.4475	2.584215	2.72093	0.0106974	0.00314173	0.0862205	0.0514466
chr6	149325888	149325988	2994794	0	+	0.42	(0.408,0.44]	chr6	280212	41	INTRON	INTRON	TAB2	ENSG00000055208.19	ENST00000606202.1:ENST00000636456.1:ENST00000637181.2:ENST00000461481.5:ENST00000367456.5:ENST00000606797.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	67	2	1.66104	2.584175	3.50731	0.0349715	8.5918e-4	0.13747500000000001	0.0265787
chr3	196060514	196060604	1897320	0	-	0.611111	(0.57,1]	chr3	189917	4	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	TFRC	ENSG00000072274.13	ENST00000420415.5:ENST00000360110.9:ENST00000392396.7:ENST00000475593.5:ENST00000483983.5:ENST00000465288.5:ENST00000477148.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	11	77	2	1.81255	2.58412	3.35569	0.00436428	1.14916e-5	0.0603562	0.00268333
chr1	145787822	145787920	540293	0	-	0.387755	(0.378,0.408]	chr1	63370	29	INTRON	INTRON	RNF115	ENSG00000265491.5	ENST00000582693.5	protein_coding	protein_coding	protein_coding	protein_coding	2	37	2	2.30961	2.5840750000000003	2.85854	0.055088	0.0107837	0.165463	0.0920575
chr22	22311600	22311700	7482965	0	+	0.45	(0.44,0.476]	chr22	763464	8	INTRON	INTRON	ENSG00000286129	ENSG00000286129.1	ENST00000652112.1	lncRNA	lncRNA	lncRNA	lncRNA	2	36	2	2.20949	2.584045	2.9586	0.0672585	0.00758318	0.183051	0.0773151
chr1	246210625	246210725	677741	0	-	0.49	(0.476,0.515]	chr1	79733	170	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000453676.5:ENST00000462422.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	65	2	2.43242	2.5840300000000003	2.73564	0.0091895	0.00333144	0.0855292	0.0512081
chr1	11082033	11082133	376711	0	-	0.42	(0.408,0.44]	chr1	44015	1	SS5_PROX	SS5_PROX:INTRON	EXOSC10	ENSG00000171824.14	ENST00000304457.11:ENST00000376936.9:ENST00000485606.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	36	2	2.58179	2.584015	2.58624	0.0273686	0.024638	0.131869	0.123904
chr7	4739337	4739437	3270486	0	+	0.42	(0.408,0.44]	chr7	303884	561	INTRON	INTRON	FOXK1	ENSG00000164916.11	ENST00000328914.5	protein_coding	protein_coding	protein_coding	protein_coding	2	36	2	2.58179	2.584015	2.58624	0.0273686	0.024638	0.131869	0.123904
chr1	25806831	25806927	48992	0	+	0.59375	(0.57,1]	chr1	6051	12	INTRON	INTRON	SELENON	ENSG00000162430.18	ENST00000361547.7:ENST00000374315.1:ENST00000494537.2:ENST00000354177.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	26	2	2.38391	2.584	2.78409	0.0116033	0.0104374	0.0902296	0.0889104
chr10	35336310	35336401	4601761	0	-	0.78022	(0.57,1]	chr10	423942	2	EXON_LNCRNA	EXON_LNCRNA	CCNY-AS1	ENSG00000271335.6	ENST00000605499.1	lncRNA	lncRNA	lncRNA	lncRNA	3	26	2	2.38391	2.584	2.78409	0.0116033	0.0104374	0.0902296	0.0889104
chr19	5704778	5704876	7124550	0	-	0.612245	(0.57,1]	chr19	717125	35	INTRON	INTRON	LONP1	ENSG00000196365.12	ENST00000360614.8:ENST00000587552.5:ENST00000540670.6:ENST00000593119.5:ENST00000585374.5:ENST00000590558.5:ENST00000590729.5:ENST00000590206.1:ENST00000588589.5:ENST00000587365.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	26	2	2.38391	2.584	2.78409	0.0116033	0.0104374	0.0902296	0.0889104
chr8	41797011	41797111	3939056	0	-	0.58	(0.57,1]	chr8	361128	1	SS5_PROX	SS5_PROX:INTRON	ANK1	ENSG00000029534.21	ENST00000347528.8:ENST00000265709.13:ENST00000289734.13:ENST00000521407.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	26	2	2.38391	2.584	2.78409	0.0116033	0.0104374	0.0902296	0.0889104
chr7	77605934	77606034	3342715	0	+	0.39	(0.378,0.408]	chr7	311370	6	INTRON	INTRON	PTPN12	ENSG00000127947.16	ENST00000248594.11:ENST00000415482.6:ENST00000435495.6:ENST00000522115.6:ENST00000447995.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	104	2	2.46651	2.5839600000000003	2.70141	0.00411614	6.45662e-4	0.0564981	0.023017
chr2	113719230	113719308	1216437	0	-	0.333333	(0.32,0.35]	chr2	129462	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	SLC35F5	ENSG00000115084.15	ENST00000469702.5:ENST00000245680.7:ENST00000409106.5:ENST00000420066.1:ENST00000459683.5:ENST00000470204.2:ENST00000469314.1:ENST00000447673.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	188	2	2.19105	2.583905	2.97676	0.00203631	9.93199e-5	0.04086	0.00838841
chr4	78810367	78810466	1981725	0	+	0.373737	(0.35,0.378]	chr4	198463	333	INTRON	INTRON	BMP2K	ENSG00000138756.19	ENST00000389010.7:ENST00000502613.3:ENST00000502871.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	179	2	2.48091	2.583845	2.68678	9.95409e-4	1.1382e-4	0.0288906	0.0091402
chr1	20774706	20774805	389737	0	-	0.565657	(0.515,0.57]	chr1	46560	12	UTR5	UTR5:EXON_MRNA:INTRON	HP1BP3	ENSG00000127483.19	ENST00000438032.6:ENST00000312239.10:ENST00000375003.6:ENST00000419948.5:ENST00000424732.5:ENST00000417710.5	protein_coding	protein_coding	protein_coding	protein_coding	14	174	2	2.25463	2.58383	2.91303	5.6442e-4	1.64175e-5	0.021937	0.00305726
chr8	43063109	43063207	3745916	0	+	0.612245	(0.57,1]	chr8	348521	36	INTRON	INTRON	FNTA	ENSG00000168522.13	ENST00000533559.5:ENST00000526755.5:ENST00000302279.8:ENST00000527153.5:ENST00000533383.5:ENST00000533998.5:ENST00000524546.5:ENST00000531266.5:ENST00000533368.1:ENST00000525699.5:ENST00000529687.5:ENST00000533336.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	29	2	2.36411	2.58381	2.80351	0.0408868	0.00172505	0.161534	0.0374701
chr19	49161498	49161596	7089069	0	+	0.530612	(0.515,0.57]	chr19	709755	17	INTRON	INTRON	TRPM4	ENSG00000130529.16	ENST00000598691.5:ENST00000598697.5:ENST00000252826.10:ENST00000595519.5:ENST00000427978.6:ENST00000598502.5:ENST00000596338.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	58	2	1.5060500000000001	2.58378	3.66151	0.0511812	4.49566e-4	0.176696	0.0196044
chr1	17421228	17421328	384797	0	-	0.6	(0.57,1]	chr1	45470	4	SS3_PROX	SS3_PROX:INTRON	RCC2	ENSG00000179051.14	ENST00000375436.9:ENST00000375433.3	protein_coding	protein_coding	protein_coding	protein_coding	3	26	2	2.17026	2.583775	2.99729	0.0220522	0.00538023	0.123836	0.0642754
chr13	41261102	41261190	5578520	0	-	0.477273	(0.476,0.515]	chr13	533287	2	SS3_PROX	SS3_PROX:INTRON	MTRF1	ENSG00000120662.16	ENST00000379480.9:ENST00000379477.5:ENST00000239852.10:ENST00000452359.5:ENST00000497679.6:ENST00000430347.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	48	2	2.06491	2.583775	3.10264	0.0304733	0.00543163	0.143385	0.0645052
chr20	34911807	34911905	7261340	0	+	0.489796	(0.476,0.515]	chr20	737659	25	INTRON	INTRON	ACSS2	ENSG00000131069.20	ENST00000481971.5:ENST00000488172.5:ENST00000481284.5:ENST00000475459.6:ENST00000484354.1:ENST00000480274.1:ENST00000477932.5:ENST00000473172.5:ENST00000493805.6:ENST00000480978.5:ENST00000360596.7:ENST00000467019.5:ENST00000253382.5:ENST00000476922.5:ENST00000464399.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	48	2	2.06491	2.583775	3.10264	0.0304733	0.00543163	0.143385	0.0645052
chr12	48199051	48199150	5131016	0	+	0.383838	(0.378,0.408]	chr12	483786	8	EXON_LNCRNA	EXON_LNCRNA:INTRON	ENSG00000269514	ENSG00000269514.3	ENST00000647575.1:ENST00000595310.1	lncRNA	lncRNA	lncRNA	lncRNA	2	37	2	2.53503	2.58375	2.63247	0.0319942	0.0215745	0.13174	0.123836
chr15	59086085	59086185	6039884	0	+	0.39	(0.378,0.408]	chr15	575035	3	SS5_PROX	SS5_PROX:INTRON	RNF111	ENSG00000157450.16	ENST00000348370.9:ENST00000559209.5:ENST00000557998.5:ENST00000561186.5:ENST00000559077.1:ENST00000560216.5:ENST00000560952.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	37	2	2.53503	2.58375	2.63247	0.0319942	0.0215745	0.13174	0.123836
chr17	30778884	30778984	6590285	0	+	0.38	(0.378,0.408]	chr17	640892	26	INTRON	INTRON	SUZ12P1	ENSG00000264538.7	ENST00000582329.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	2	37	2	2.53503	2.58375	2.63247	0.0319942	0.0215745	0.13174	0.123836
chr2	238189521	238189605	1344104	0	-	0.392857	(0.378,0.408]	chr2	140922	3	SS5_PROX	SS5_PROX:INTRON	ILKAP	ENSG00000132323.9	ENST00000254654.8:ENST00000463129.5:ENST00000612675.4:ENST00000622223.4:ENST00000457149.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	37	2	2.53503	2.58375	2.63247	0.0319942	0.0215745	0.13174	0.123836
chr7	973084	973180	3460394	0	-	0.40625	(0.378,0.408]	chr7	323541	5	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	COX19	ENSG00000240230.6	ENST00000457254.5:ENST00000344111.4:ENST00000466146.1:ENST00000466853.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	37	2	2.53503	2.58375	2.63247	0.0319942	0.0215745	0.13174	0.123836
chr2	55049284	55049370	1121399	0	-	0.488372	(0.476,0.515]	chr2	120171	2	SS5_PROX	SS5_PROX:INTRON	RTN4	ENSG00000115310.19	ENST00000404909.5:ENST00000394611.6:ENST00000317610.11:ENST00000357732.8:ENST00000337526.11:ENST00000438462.1:ENST00000427710.5	protein_coding	protein_coding	protein_coding	protein_coding	6	96	2	2.26789	2.5836699999999997	2.89945	0.0176567	1.1863e-4	0.105233	0.00930884
chr12	70306112	70306210	5167069	0	+	0.357143	(0.35,0.378]	chr12	489415	39	INTRON	INTRON	CNOT2	ENSG00000111596.14	ENST00000547780.5:ENST00000418359.7:ENST00000552319.5:ENST00000550160.5:ENST00000551661.5:ENST00000551132.5:ENST00000548021.5:ENST00000550641.6:ENST00000229195.8:ENST00000552915.5:ENST00000549443.5:ENST00000552483.5:ENST00000552422.5:ENST00000547321.5:ENST00000553020.5:ENST00000548159.5:ENST00000549750.5:ENST00000551043.5:ENST00000548599.5:ENST00000550194.5:ENST00000551873.5:ENST00000547867.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	88	2	1.87195	2.583625	3.2953	0.00738821	0.0031465	0.0769106	0.0500431
chr16	2257974	2258071	6431590	0	-	0.463918	(0.44,0.476]	chr16	618786	24	EXON_MRNA	EXON_MRNA:INTRON	RNPS1	ENSG00000205937.12	ENST00000397086.6:ENST00000566458.5:ENST00000320225.10:ENST00000566397.5:ENST00000565678.5:ENST00000561718.5:ENST00000568631.5:ENST00000569598.6:ENST00000301730.12:ENST00000567147.5:ENST00000565243.2:ENST00000565870.5:ENST00000561518.5:ENST00000564311.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	108	2	1.77578	2.583575	3.39137	0.0105236	1.73175e-4	0.0908969	0.0120833
chr15	30673252	30673351	5992754	0	+	0.454545	(0.44,0.476]	chr15	569767	141	INTRON	INTRON	ENSG00000284906:ENSG00000285035:ENSG00000187951	ENSG00000284906.3:ENSG00000285035.2:ENSG00000187951.11	ENST00000685924.1:ENST00000563110.6:ENST00000566548.5:ENST00000602616.6:ENST00000562954.1	protein_coding	protein_coding	protein_coding:lncRNA:transcribed_unprocessed_pseudogene	protein_coding:nonsense_mediated_decay:lncRNA:processed_transcript	8	118	2	2.54812	2.58354	2.61896	0.0017827	4.00243e-4	0.0379201	0.0179738
chr1	35373311	35373410	69343	0	+	0.323232	(0.32,0.35]	chr1	8759	23	INTRON	INTRON	ZMYM4	ENSG00000146463.12	ENST00000314607.11:ENST00000457946.1	protein_coding	protein_coding	protein_coding	protein_coding	4	75	2	2.30731	2.583525	2.85974	0.0176772	0.00186579	0.10525	0.0399675
chr5	55379894	55379994	2355826	0	+	0.39	(0.378,0.408]	chr5	227229	3	INTRON	INTRON	MTREX	ENSG00000039123.16	ENST00000230640.10:ENST00000506750.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	50	2	2.56408	2.58352	2.60296	0.0267851	0.00566993	0.123349	0.0678837
chr6	42798744	42798843	2866933	0	+	0.393939	(0.378,0.408]	chr6	271294	163	INTRON	INTRON	BICRAL	ENSG00000112624.13	ENST00000614467.4:ENST00000314073.10	protein_coding	protein_coding	protein_coding	protein_coding	3	50	2	2.56408	2.58352	2.60296	0.0267851	0.00566993	0.123349	0.0678837
chr8	102380905	102381005	4012438	0	-	0.4	(0.378,0.408]	chr8	367237	189	INTRON	INTRON	UBR5	ENSG00000104517.13	ENST00000520539.6:ENST00000220959.8:ENST00000521922.5	protein_coding	protein_coding	protein_coding	protein_coding	3	50	2	2.56408	2.58352	2.60296	0.0267851	0.00566993	0.123349	0.0678837
chr17	32872993	32873092	6757075	0	-	0.353535	(0.35,0.378]	chr17	664079	101	INTRON	INTRON	MYO1D	ENSG00000176658.17	ENST00000318217.10:ENST00000579584.5:ENST00000583621.1	protein_coding	protein_coding	protein_coding	protein_coding	3	53	2	1.75561	2.5835	3.41139	0.0739399	0.00143263	0.190914	0.0347139
chr5	139343406	139343506	2499798	0	+	0.36	(0.35,0.378]	chr5	238987	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	PAIP2	ENSG00000120727.13	ENST00000507755.5:ENST00000265192.9:ENST00000510409.1:ENST00000511381.1:ENST00000511706.5:ENST00000507415.1:ENST00000394795.6:ENST00000510080.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	53	2	1.75561	2.5835	3.41139	0.0739399	0.00143263	0.190914	0.0347139
chr1	168249327	168249427	250398	0	+	0.47	(0.44,0.476]	chr1	29769	69	UTR3	UTR3:EXON_MRNA	SFT2D2	ENSG00000213064.10	ENST00000271375.7	protein_coding	protein_coding	protein_coding	protein_coding	2	36	2	2.49112	2.5834200000000003	2.67572	0.0315968	0.0212064	0.144381	0.113017
chr10	18546838	18546934	4569659	0	-	0.46875	(0.44,0.476]	chr10	421476	3	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7:ENST00000493816.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	36	2	2.49112	2.5834200000000003	2.67572	0.0315968	0.0212064	0.144381	0.113017
chr14	102715017	102715117	5823766	0	+	0.47	(0.44,0.476]	chr14	552527	4	SS5_PROX	SS5_PROX:INTRON	RCOR1	ENSG00000089902.10	ENST00000262241.7	protein_coding	protein_coding	protein_coding	protein_coding	2	36	2	2.49112	2.5834200000000003	2.67572	0.0315968	0.0212064	0.144381	0.113017
chr19	1092972	1093066	7111188	0	-	0.457447	(0.44,0.476]	chr19	714271	7	INTRON	INTRON	POLR2E	ENSG00000099817.12	ENST00000615234.5:ENST00000586746.5:ENST00000612655.4:ENST00000589737.5:ENST00000591767.5:ENST00000215587.11:ENST00000586817.5:ENST00000619917.4:ENST00000585838.2:ENST00000614705.4:ENST00000591709.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	36	2	2.49112	2.5834200000000003	2.67572	0.0315968	0.0212064	0.144381	0.113017
chr19	16397951	16398050	7148919	0	-	0.454545	(0.44,0.476]	chr19	722251	21	INTRON	INTRON	EPS15L1	ENSG00000127527.14	ENST00000602022.5:ENST00000455140.7:ENST00000592031.5:ENST00000248070.10:ENST00000535753.6:ENST00000594975.5:ENST00000599790.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	36	2	2.49112	2.5834200000000003	2.67572	0.0315968	0.0212064	0.144381	0.113017
chr6	57133692	57133783	2878503	0	+	0.538462	(0.515,0.57]	chr6	273277	1	INTRON	INTRON	ZNF451	ENSG00000112200.17	ENST00000357489.7:ENST00000444273.6:ENST00000370706.9:ENST00000491832.6:ENST00000502749.1:ENST00000504603.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	55	2	2.38476	2.5834200000000003	2.78208	0.0110593	0.00209264	0.0873897	0.0424943
chr6	75262582	75262680	3140359	0	-	0.459184	(0.44,0.476]	chr6	292669	13	INTRON	INTRON	TMEM30A	ENSG00000112697.17	ENST00000230461.11:ENST00000673730.1:ENST00000674104.1:ENST00000673989.1:ENST00000674151.1:ENST00000370050.9:ENST00000475111.6:ENST00000674038.1:ENST00000518161.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	36	2	2.49112	2.5834200000000003	2.67572	0.0315968	0.0212064	0.144381	0.113017
chr9	137100723	137100816	4222793	0	+	0.473118	(0.44,0.476]	chr9	387926	10	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	MAN1B1	ENSG00000177239.16	ENST00000682881.1:ENST00000683324.1:ENST00000684138.1:ENST00000683135.1:ENST00000542372.2:ENST00000371587.9:ENST00000684366.1:ENST00000684229.1:ENST00000683355.1:ENST00000682117.1:ENST00000683475.1:ENST00000682425.1:ENST00000682210.1:ENST00000684645.1:ENST00000683979.1:ENST00000371589.9:ENST00000535144.6:ENST00000684272.1:ENST00000475449.7:ENST00000684759.1:ENST00000545539.6:ENST00000684144.1:ENST00000683987.1:ENST00000682212.1:ENST00000544448.6:ENST00000684297.1:ENST00000474902.5:ENST00000682964.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	36	2	2.49112	2.5834200000000003	2.67572	0.0315968	0.0212064	0.144381	0.113017
chr6	47616917	47617016	2874978	0	+	0.373737	(0.35,0.378]	chr6	272823	40	INTRON	INTRON	CD2AP	ENSG00000198087.7	ENST00000359314.5	protein_coding	protein_coding	protein_coding	protein_coding	5	85	2	2.4475	2.5834149999999996	2.71933	0.0106974	9.31518e-4	0.0862205	0.0278746
chr21	10434166	10434265	7368336	0	+	0.50505	(0.476,0.515]	chr21	751975	189	INTRON	INTRON	BAGE2	ENSG00000187172.15	ENST00000474011.5:ENST00000470054.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	12	177	2	2.46387	2.58336	2.70285	5.23223e-4	8.9508e-5	0.0210813	0.0079464
chr17	37329972	37330072	6762277	0	-	0.34	(0.32,0.35]	chr17	664951	4	SS5_PROX	SS5_PROX:INTRON	ACACA	ENSG00000278540.5	ENST00000616317.5:ENST00000614428.4:ENST00000613146.4:ENST00000615229.4:ENST00000621960.1:ENST00000617548.1:ENST00000616352.4:ENST00000614789.4:ENST00000614438.1:ENST00000612007.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:non_stop_decay:nonsense_mediated_decay	3	58	2	2.38582	2.583275	2.78073	0.01481	0.0138529	0.106702	0.0953077
chr2	151798596	151798696	1243436	0	-	0.6	(0.57,1]	chr2	132026	63	INTRON	INTRON	ARL5A	ENSG00000162980.17	ENST00000446896.7	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	21	142	2	1.83253	2.583275	3.33402	8.77314e-4	2.3851e-7	0.027155	2.34715e-4
chr1	150371317	150371417	221768	0	+	0.39	(0.378,0.408]	chr1	25051	60	INTRON	INTRON	RPRD2	ENSG00000163125.16	ENST00000492220.1:ENST00000369068.5:ENST00000401000.8:ENST00000369067.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	50	2	1.88729	2.58318	3.27907	0.0532327	0.0023379	0.162538	0.0442989
chr19	21445607	21445704	7158658	0	-	0.391753	(0.378,0.408]	chr19	723687	8	INTRON	INTRON	ENSG00000268119	ENSG00000268119.7	ENST00000596705.5	lncRNA	lncRNA	lncRNA	lncRNA	3	50	2	1.88729	2.58318	3.27907	0.0532327	0.0023379	0.162538	0.0442989
chr6	135216568	135216667	2962527	0	+	0.383838	(0.378,0.408]	chr6	278661	128	INTRON	INTRON	MYB	ENSG00000118513.20	ENST00000341911.10:ENST00000442647.7:ENST00000316528.12:ENST00000616088.4:ENST00000339290.9:ENST00000367812.6:ENST00000463282.6:ENST00000525477.5:ENST00000533837.5:ENST00000367814.8:ENST00000525369.5:ENST00000438901.6:ENST00000525514.5:ENST00000526320.5:ENST00000526889.5:ENST00000529586.5:ENST00000531519.5:ENST00000533808.5:ENST00000528343.5:ENST00000524588.5:ENST00000525002.5:ENST00000525940.5:ENST00000526187.5:ENST00000526565.5:ENST00000528015.5:ENST00000528140.5:ENST00000528345.5:ENST00000528774.5:ENST00000529262.5:ENST00000531634.5:ENST00000531737.5:ENST00000533384.5:ENST00000533624.5:ENST00000534044.5:ENST00000534121.5:ENST00000531845.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	50	2	1.88729	2.58318	3.27907	0.0532327	0.0023379	0.162538	0.0442989
chr7	117083049	117083149	3387289	0	+	0.4	(0.378,0.408]	chr7	317155	60	INTRON	INTRON	ST7:ST7-OT4	ENSG00000004866.22:ENSG00000214188.9	ENST00000393446.6:ENST00000265437.9:ENST00000393451.7:ENST00000438863.5:ENST00000393449.5:ENST00000443979.5:ENST00000323984.8:ENST00000417919.5:ENST00000446490.5:ENST00000471110.5:ENST00000422922.5:ENST00000432298.5:ENST00000449366.5:ENST00000487459.5:ENST00000393443.5:ENST00000467538.5:ENST00000434836.5:ENST00000465133.5:ENST00000477742.5:ENST00000462544.1:ENST00000393444.7:ENST00000393447.8:ENST00000420755.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:nonsense_mediated_decay:lncRNA:processed_transcript	3	50	2	1.88729	2.58318	3.27907	0.0532327	0.0023379	0.162538	0.0442989
chr1	19208776	19208876	386828	0	-	0.36	(0.35,0.378]	chr1	46143	66	INTRON	INTRON	UBR4	ENSG00000127481.15	ENST00000375254.8	protein_coding	protein_coding	protein_coding	protein_coding	5	85	2	2.28182	2.5831350000000004	2.88445	0.00637232	0.00212567	0.0724821	0.041756
chr11	66620259	66620345	4810835	0	+	0.174419	[0,0.28]	chr11	447855	4	INTRON	INTRON	RBM14-RBM4:RBM14	ENSG00000248643.5:ENSG00000239306.5	ENST00000412278.2:ENST00000393979.3:ENST00000511114.1:ENST00000310137.5:ENST00000409372.1:ENST00000421355.1:ENST00000443702.1:ENST00000500635.2:ENST00000409738.4:ENST00000461478.1:ENST00000496694.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	190	2	1.95048	2.58311	3.21574	0.0102858	1.31911e-4	0.0850389	0.00990163
chr6	147771042	147771142	2991709	0	+	0.38	(0.378,0.408]	chr6	280177	336	INTRON	INTRON	ENSG00000227681	ENSG00000227681.5	ENST00000427015.1	lncRNA	lncRNA	lncRNA	lncRNA	3	50	2	2.11103	2.583025	3.05502	0.0266911	0.00689519	0.134419	0.0717484
chr1	28738538	28738638	58359	0	+	0.5	(0.476,0.515]	chr1	7586	2	SS5_PROX	SS5_PROX:INTRON	YTHDF2	ENSG00000198492.16	ENST00000542507.5:ENST00000474884.5:ENST00000373812.8:ENST00000541996.5:ENST00000478283.5:ENST00000496288.5:ENST00000476976.1:ENST00000475796.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	92	2	2.47496	2.583	2.69104	0.00323541	9.94264e-4	0.0507251	0.0290397
chr5	181232083	181232179	2563283	0	+	0.354167	(0.35,0.378]	chr5	245290	14	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	TRIM41	ENSG00000146063.20	ENST00000515499.5:ENST00000315073.10:ENST00000351937.9:ENST00000508930.1:ENST00000503114.1:ENST00000515223.1:ENST00000515834.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	84	2	2.5003	2.58299	2.66568	0.00496487	0.00256148	0.0615009	0.0466761
chr1	245936797	245936897	674996	0	-	0.43	(0.408,0.44]	chr1	79699	61	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000366517.5:ENST00000490107.6:ENST00000493441.5:ENST00000488153.5:ENST00000492487.5:ENST00000391836.3:ENST00000464398.1:ENST00000453676.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	48	2	2.44674	2.5829250000000004	2.71911	0.0189489	0.00868283	0.108861	0.0842798
chr14	96841017	96841117	5811295	0	+	0.44	(0.408,0.44]	chr14	551020	1	SS3_PROX	SS3_PROX:INTRON	VRK1	ENSG00000100749.9	ENST00000553683.2:ENST00000680538.1:ENST00000555351.2:ENST00000681195.1:ENST00000681524.1:ENST00000680084.1:ENST00000679533.1:ENST00000681598.1:ENST00000679727.1:ENST00000679758.1:ENST00000680509.1:ENST00000557222.6:ENST00000679977.1:ENST00000680387.1:ENST00000680335.1:ENST00000680683.1:ENST00000681474.1:ENST00000216639.8:ENST00000681363.1:ENST00000681538.1:ENST00000679736.1:ENST00000681176.1:ENST00000680922.1:ENST00000679903.1:ENST00000557352.2:ENST00000681101.1:ENST00000681419.1:ENST00000680348.1:ENST00000679941.1:ENST00000679452.1:ENST00000680849.1:ENST00000679770.1:ENST00000681493.1:ENST00000681778.1:ENST00000680993.1:ENST00000681355.1:ENST00000681695.1:ENST00000681344.1:ENST00000680007.1:ENST00000679918.1:ENST00000681785.1:ENST00000679816.1:ENST00000680756.1:ENST00000681249.1:ENST00000680526.1:ENST00000679365.1:ENST00000680851.1:ENST00000679506.1:ENST00000679650.1:ENST00000679462.1:ENST00000680724.1:ENST00000680339.1:ENST00000680384.1:ENST00000680222.1:ENST00000681077.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	48	2	2.44674	2.5829250000000004	2.71911	0.0189489	0.00868283	0.108861	0.0842798
chr15	83490251	83490351	6082412	0	+	0.38	(0.378,0.408]	chr15	579044	1	SS3_PROX	SS3_PROX:INTRON	SH3GL3	ENSG00000140600.17	ENST00000492099.1:ENST00000427482.7:ENST00000563901.5:ENST00000324537.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	68	2	2.11194	2.582915	3.05389	0.0292534	6.75567e-4	0.128055	0.0236067
chr4	1221358	1221457	2094720	0	-	0.474747	(0.44,0.476]	chr4	207127	48	INTRON	INTRON	CTBP1	ENSG00000159692.16	ENST00000382952.8:ENST00000290921.10:ENST00000504092.5:ENST00000510739.1:ENST00000505826.5:ENST00000514669.5:ENST00000506180.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	59	2	1.69402	2.58291	3.4718	0.0456129	0.00136358	0.164236	0.0336321
chr6	163503089	163503189	3032596	0	+	0.28	[0,0.28]	chr6	282586	238	INTRON	INTRON	QKI	ENSG00000112531.17	ENST00000361758.8:ENST00000453779.6:ENST00000275262.11:ENST00000392127.6:ENST00000361752.8:ENST00000361195.6:ENST00000424802.7:ENST00000545607.5:ENST00000544436.5:ENST00000537041.5:ENST00000545346.1:ENST00000544823.5:ENST00000537883.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	51	2	2.57033	2.582905	2.59548	0.0346067	0.0305273	0.143385	0.136649
chr16	88932439	88932539	6540850	0	-	0.42	(0.408,0.44]	chr16	634096	301	INTRON	INTRON	CBFA2T3	ENSG00000129993.15	ENST00000268679.9:ENST00000327483.9:ENST00000569464.5:ENST00000569443.5:ENST00000563640.1:ENST00000564416.1:ENST00000570046.1	protein_coding	protein_coding	protein_coding	protein_coding	5	78	2	2.30838	2.582805	2.85723	0.00547703	0.00211413	0.0671198	0.0415897
chr3	47969385	47969485	1686298	0	-	0.41	(0.408,0.44]	chr3	172245	376	INTRON	INTRON	MAP4	ENSG00000047849.22	ENST00000683076.1:ENST00000395734.7:ENST00000426837.6:ENST00000360240.10:ENST00000423088.5:ENST00000633710.1	protein_coding	protein_coding	protein_coding	protein_coding	7	107	2	2.41796	2.582775	2.74759	0.0015483	0.00102152	0.0363194	0.029231300000000002
chr17	21012242	21012329	6742849	0	-	0.448276	(0.44,0.476]	chr17	662028	6	INTRON	INTRON	USP22	ENSG00000124422.12	ENST00000261497.9:ENST00000537526.6:ENST00000455117.6:ENST00000579645.5:ENST00000582335.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	107	2	1.86755	2.5827	3.29785	0.00715715	2.77287e-4	0.0756118	0.0152764
chr17	35632576	35632675	6600000	0	+	0.292929	(0.28,0.32]	chr17	642282	45	INTRON	INTRON	AP2B1	ENSG00000006125.18	ENST00000616784.4:ENST00000621914.4:ENST00000620039.4:ENST00000616681.4:ENST00000621668.4:ENST00000610402.5:ENST00000612035.4:ENST00000614600.4:ENST00000612116.5:ENST00000618940.4:ENST00000619183.1:ENST00000588116.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	60	2	2.33771	2.5827	2.82769	0.0169391	0.0142701	0.103888	0.103838
chr1	120310998	120311098	203244	0	+	0.43	(0.408,0.44]	chr1	22366	326	INTRON	INTRON	ENSG00000274642	ENSG00000274642.1	ENST00000612320.1	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	3	48	2	2.21238	2.5826700000000002	2.95296	0.0193525	0.00929354	0.119831	0.0817766
chr5	139349192	139349292	2499856	0	+	0.42	(0.408,0.44]	chr5	238989	54	INTRON	INTRON	PAIP2	ENSG00000120727.13	ENST00000507755.5:ENST00000265192.9:ENST00000510409.1:ENST00000511381.1:ENST00000511706.5:ENST00000507415.1:ENST00000394795.6:ENST00000510080.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	48	2	2.21238	2.5826700000000002	2.95296	0.0193525	0.00929354	0.119831	0.0817766
chr7	152399948	152400048	3680933	0	-	0.43	(0.408,0.44]	chr7	341660	409	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000682301.1:ENST00000452749.2:ENST00000680867.1:ENST00000683800.1:ENST00000684278.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	48	2	2.21238	2.5826700000000002	2.95296	0.0193525	0.00929354	0.119831	0.0817766
chr1	19190208	19190307	386626	0	-	0.494949	(0.476,0.515]	chr1	46093	23	INTRON	INTRON	UBR4	ENSG00000127481.15	ENST00000375254.8	protein_coding	protein_coding	protein_coding	protein_coding	8	107	2	2.19541	2.582605	2.9698	0.00155426	0.00124841	0.0364504	0.0323336
chr1	244859950	244860046	673059	0	-	0.447917	(0.44,0.476]	chr1	79630	7	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	HNRNPU	ENSG00000153187.20	ENST00000649899.1:ENST00000638230.1:ENST00000640306.1:ENST00000444376.7:ENST00000640218.2:ENST00000639628.2:ENST00000440865.2:ENST00000638952.1:ENST00000638716.1:ENST00000366525.8:ENST00000639880.1:ENST00000283179.14:ENST00000638475.1:ENST00000468690.2:ENST00000476241.2:ENST00000640001.1:ENST00000640056.1:ENST00000638301.1:ENST00000639667.1:ENST00000465881.2:ENST00000638589.1:ENST00000640440.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	21	289	2	2.2391200000000002	2.582585	2.92605	1.41821e-4	2.45905e-5	0.0102869	0.00407401
chr9	130738854	130738954	4214113	0	+	0.49	(0.476,0.515]	chr9	386427	240	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000393293.4	protein_coding	protein_coding	protein_coding	protein_coding	14	200	2	2.07503	2.5825750000000003	3.09012	0.00107969	2.67681e-5	0.0300133	0.00429852
chr3	37306028	37306128	1396392	0	+	0.28	[0,0.28]	chr3	146385	33	INTRON	INTRON	GOLGA4	ENSG00000144674.17	ENST00000435830.6:ENST00000444882.5:ENST00000356847.8:ENST00000450863.6:ENST00000361924.7:ENST00000429018.5:ENST00000437131.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	84	2	2.34586	2.58254	2.81922	0.0197411	0.00631808	0.109608	0.0722266
chr7	10471861	10471961	3481497	0	-	0.39	(0.378,0.408]	chr7	325766	187	INTRON	INTRON	MGC4859	ENSG00000283117.1	ENST00000634803.1	lncRNA	lncRNA	lncRNA	lncRNA	5	69	2	1.60295	2.582515	3.56208	0.0422859	6.94246e-4	0.148082	0.0240761
chr6	10922990	10923090	2812120	0	+	0.38	(0.378,0.408]	chr6	264619	2	SS5_PROX	SS5_PROX:INTRON	SYCP2L	ENSG00000153157.13	ENST00000341041.8:ENST00000283141.11:ENST00000543878.5:ENST00000487561.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	51	2	2.30628	2.5824100000000003	2.85854	0.0163339	0.0107837	0.101571	0.0920575
chr1	67421852	67421949	477543	0	-	0.474227	(0.44,0.476]	chr1	57477	13	INTRON	INTRON	SERBP1	ENSG00000142864.15	ENST00000370994.8:ENST00000361219.11:ENST00000370995.6:ENST00000370990.5:ENST00000493607.1:ENST00000484880.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	14	211	2	2.43725	2.5823400000000003	2.72743	2.66096e-4	8.16302e-5	0.0144386	0.00810741
chr13	102616855	102616955	5532189	0	+	0.31	(0.28,0.32]	chr13	528649	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TPP2	ENSG00000134900.12	ENST00000376052.5:ENST00000651448.1:ENST00000376065.8:ENST00000652308.1:ENST00000651544.1:ENST00000651748.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	152	2	2.19181	2.5823349999999996	2.97286	0.00461581	3.34495e-4	0.0598418	0.0162792
chr8	37885300	37885400	3935803	0	-	0.35	(0.32,0.35]	chr8	360576	73	INTRON	INTRON	RAB11FIP1	ENSG00000156675.16	ENST00000330843.9:ENST00000287263.8:ENST00000522727.5	protein_coding	protein_coding	protein_coding	protein_coding	5	90	2	2.56589	2.58222	2.59855	0.00682041	0.00204522	0.0712518	0.041908
chr16	31185751	31185846	6340616	0	+	0.452632	(0.44,0.476]	chr16	608337	7	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	FUS	ENSG00000089280.19	ENST00000566605.5:ENST00000254108.12:ENST00000380244.7:ENST00000487509.6:ENST00000568685.1:ENST00000570090.1:ENST00000474990.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	22	320	2	2.48615	2.58216	2.67817	4.07447e-5	4.02025e-5	0.00539487	0.00519018
chr10	3070155	3070244	4381552	0	+	0.393258	(0.378,0.408]	chr10	404049	4	INTRON	INTRON	PFKP	ENSG00000067057.18	ENST00000607886.5:ENST00000381125.9:ENST00000381075.7:ENST00000678206.1:ENST00000677351.1:ENST00000678089.1:ENST00000676796.1:ENST00000421751.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	39	2	2.26252	2.58207	2.90162	0.056222	0.0113157	0.18407	0.0886121
chr1	111167963	111168063	184009	0	+	0.43	(0.408,0.44]	chr1	20432	63	INTRON	INTRON	CEPT1	ENSG00000134255.15	ENST00000545121.5:ENST00000498239.5:ENST00000357172.9:ENST00000460443.5:ENST00000478042.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	58	2	2.26617	2.58206	2.89795	0.0110735	0.00649402	0.0873897	0.0734343
chr8	129503056	129503156	4060312	0	-	0.52	(0.515,0.57]	chr8	369642	79	INTRON	INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1:ENST00000676273.1:ENST00000667643.1:ENST00000668791.1:ENST00000663716.1:ENST00000663572.1:ENST00000676148.1:ENST00000667962.1:ENST00000674877.1:ENST00000675316.1:ENST00000674656.1:ENST00000446592.7:ENST00000667341.1:ENST00000675186.1:ENST00000652971.1:ENST00000661447.1:ENST00000674863.1:ENST00000675498.1:ENST00000675527.1:ENST00000676108.1:ENST00000657647.1:ENST00000675589.1:ENST00000675913.1:ENST00000675109.1:ENST00000671632.1:ENST00000671311.1:ENST00000676099.1:ENST00000660652.1:ENST00000675522.1:ENST00000675183.1:ENST00000658861.1:ENST00000663991.1:ENST00000675044.1:ENST00000675435.1:ENST00000674639.1:ENST00000676069.1:ENST00000675532.1:ENST00000674762.1:ENST00000523151.6:ENST00000675948.1:ENST00000665364.1:ENST00000657251.1:ENST00000675166.1:ENST00000674883.1:ENST00000675867.1:ENST00000674580.1:ENST00000675393.1:ENST00000520048.1:ENST00000674906.1:ENST00000676030.1:ENST00000670588.1:ENST00000675072.1:ENST00000664936.1:ENST00000652914.1:ENST00000657069.1	lncRNA	lncRNA	lncRNA	lncRNA	8	105	2	2.5483	2.582055	2.61581	0.00127505	4.26839e-4	0.0331722	0.0189958
chr5	137981757	137981857	2730279	0	-	0.48	(0.476,0.515]	chr5	256955	189	INTRON	INTRON	FAM13B	ENSG00000031003.11	ENST00000689681.1:ENST00000033079.7:ENST00000425075.6:ENST00000420893.6	protein_coding	protein_coding	protein_coding	protein_coding	6	92	2	2.50488	2.581995	2.65911	0.00285353	0.00116074	0.0474836	0.0314098
chr1	52876785	52876884	105254	0	+	0.282828	(0.28,0.32]	chr1	13760	87	INTRON	INTRON	ZYG11A	ENSG00000203995.10	ENST00000371532.5:ENST00000612017.4:ENST00000371528.2	protein_coding	protein_coding	protein_coding	protein_coding	3	60	2	2.38391	2.581975	2.78004	0.0193244	0.0122525	0.108861	0.0969406
chr2	15299145	15299244	1070502	0	-	0.313131	(0.28,0.32]	chr2	114251	60	INTRON	INTRON	NBAS	ENSG00000151779.13	ENST00000281513.10:ENST00000442506.5	protein_coding	protein_coding	protein_coding	protein_coding	3	60	2	2.38391	2.581975	2.78004	0.0193244	0.0122525	0.108861	0.0969406
chr7	65884951	65885050	3322994	0	+	0.292929	(0.28,0.32]	chr7	309012	110	INTRON	INTRON	VKORC1L1	ENSG00000196715.7	ENST00000360768.5:ENST00000648187.1:ENST00000648179.1:ENST00000434382.2	protein_coding	protein_coding	protein_coding	protein_coding	3	60	2	2.38391	2.581975	2.78004	0.0193244	0.0122525	0.108861	0.0969406
chr15	95647473	95647572	6108440	0	+	0.313131	(0.28,0.32]	chr15	581765	86	INTRON	INTRON	ENSG00000275016	ENSG00000275016.5	ENST00000612595.2:ENST00000661571.1:ENST00000614344.5:ENST00000667344.1:ENST00000666682.1:ENST00000663174.1:ENST00000661536.1:ENST00000615194.1:ENST00000667774.1:ENST00000616588.4:ENST00000656202.1:ENST00000666386.1:ENST00000611285.1	lncRNA	lncRNA	lncRNA	lncRNA	3	60	2	2.28998	2.5819	2.87382	0.0166401	0.014868	0.110511	0.0989021
chr7	55955744	55955839	3318557	0	+	0.431579	(0.408,0.44]	chr7	308398	7	UTR3	UTR3:EXON_MRNA:INTRON	NIPSNAP2:MRPS17	ENSG00000146729.10:ENSG00000239789.6	ENST00000446692.5:ENST00000285298.9	protein_coding	protein_coding	protein_coding	protein_coding	4	68	2	2.27464	2.581885	2.88913	0.0158016	0.00185044	0.109464	0.0388609
chr16	604046	604146	6272848	0	+	0.42	(0.408,0.44]	chr16	598730	72	INTRON	INTRON	RAB40C	ENSG00000197562.10	ENST00000535977.5:ENST00000569575.5:ENST00000539661.5:ENST00000566290.5:ENST00000248139.8:ENST00000568586.5:ENST00000538492.5:ENST00000565511.5:ENST00000509637.6:ENST00000563109.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	66	2	2.00961	2.581875	3.15414	0.00931007	0.00469847	0.0855292	0.0600108
chr10	131980568	131980667	4715884	0	-	0.252525	[0,0.28]	chr10	435218	63	INTRON	INTRON	BNIP3	ENSG00000176171.12	ENST00000368636.9:ENST00000540159.4:ENST00000633835.2:ENST00000631806.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	200	2	2.06667	2.58187	3.09707	0.00909913	9.13135e-5	0.0809976	0.00799011
chr16	10386957	10387050	6286283	0	+	0.387097	(0.378,0.408]	chr16	601953	10	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	ATF7IP2	ENSG00000166669.14	ENST00000564797.5:ENST00000396559.5:ENST00000396560.6:ENST00000562527.5:ENST00000561932.5:ENST00000566316.5:ENST00000543967.5:ENST00000562102.6:ENST00000535850.5:ENST00000569900.5:ENST00000569939.5:ENST00000562396.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	126	2	2.35181	2.581795	2.81178	0.00287186	2.02203e-4	0.0474836	0.0124395
chr2	32500409	32500509	732268	0	+	0.53	(0.515,0.57]	chr2	84528	3	SS5_PROX	SS5_PROX:INTRON	BIRC6	ENSG00000115760.15	ENST00000421745.7:ENST00000648282.1	protein_coding	protein_coding	protein_coding	protein_coding	7	84	2	2.28079	2.5817300000000003	2.88267	0.00152842	0.00145207	0.0353936	0.0349828
chr2	15537051	15537149	1072920	0	-	0.418367	(0.408,0.44]	chr2	114453	1	INTRON	INTRON	NBAS	ENSG00000151779.13	ENST00000281513.10	protein_coding	protein_coding	protein_coding	protein_coding	4	65	2	2.21857	2.58169	2.94481	0.0209591	0.00110214	0.112046	0.03038
chr14	21260915	21261014	5835082	0	-	0.454545	(0.44,0.476]	chr14	554465	60	INTRON	INTRON	HNRNPC	ENSG00000092199.19	ENST00000336053.10:ENST00000553300.6:ENST00000554969.5:ENST00000556142.5:ENST00000554455.5:ENST00000430246.6:ENST00000553753.5:ENST00000555309.5:ENST00000555914.5:ENST00000557442.5:ENST00000556628.5:ENST00000556513.5:ENST00000555883.5:ENST00000557201.5:ENST00000556897.5:ENST00000420743.6:ENST00000554539.5:ENST00000554383.5:ENST00000555215.5:ENST00000555137.5:ENST00000554891.5:ENST00000556226.5:ENST00000555176.5:ENST00000553614.5:ENST00000557336.1:ENST00000557768.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	27	378	2	2.33699	2.58164	2.82629	4.71991e-5	1.57395e-5	0.00561066	0.00318411
chr11	3746741	3746841	4894654	0	-	0.52	(0.515,0.57]	chr11	458870	17	INTRON	INTRON	NUP98	ENSG00000110713.17	ENST00000359171.8:ENST00000324932.12:ENST00000650171.1:ENST00000355260.7:ENST00000397004.8:ENST00000397007.8:ENST00000527104.5:ENST00000529379.1:ENST00000397013.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	41	2	2.26012	2.581615	2.90311	0.0160033	0.0094233	0.109464	0.0817766
chr10	68765287	68765387	4442729	0	+	0.42	(0.408,0.44]	chr10	409684	37	INTRON	INTRON	CCAR1	ENSG00000060339.14	ENST00000630771.2:ENST00000543719.5:ENST00000541012.5:ENST00000265872.11:ENST00000539539.5:ENST00000543229.5:ENST00000536012.5:ENST00000543225.5:ENST00000540210.5:ENST00000479143.2:ENST00000543706.1:ENST00000539250.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	49	2	2.51492	2.5816049999999997	2.64829	0.0329839	0.00400062	0.133816	0.057767
chr5	179721340	179721437	2560930	0	+	0.43299	(0.408,0.44]	chr5	244936	9	EXON_MRNA	EXON_MRNA:INTRON	CANX	ENSG00000127022.16	ENST00000681674.1:ENST00000681712.1:ENST00000681903.1:ENST00000680406.1:ENST00000502296.6:ENST00000504734.5:ENST00000452673.6:ENST00000679719.1:ENST00000679523.1:ENST00000679395.1:ENST00000681504.1:ENST00000679642.1:ENST00000681894.1:ENST00000680504.1:ENST00000681265.1:ENST00000680894.1:ENST00000680812.1:ENST00000680614.1:ENST00000680985.1:ENST00000680837.1:ENST00000680827.1:ENST00000681576.1:ENST00000680984.1:ENST00000680042.1:ENST00000681762.1:ENST00000681476.1:ENST00000681072.1:ENST00000247461.9:ENST00000513246.6:ENST00000680618.1:ENST00000502673.6:ENST00000680092.1:ENST00000506654.6:ENST00000514032.5:ENST00000681733.1:ENST00000679471.1:ENST00000679527.1:ENST00000680006.1:ENST00000681398.1:ENST00000681431.1:ENST00000680013.1:ENST00000681076.1:ENST00000681168.1:ENST00000509563.2:ENST00000681342.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	49	2	2.51492	2.5816049999999997	2.64829	0.0329839	0.00400062	0.133816	0.057767
chr9	111913604	111913704	4184619	0	+	0.47	(0.44,0.476]	chr9	381684	159	INTRON	INTRON	UGCG	ENSG00000148154.10	ENST00000374279.4:ENST00000489355.1:ENST00000495085.1:ENST00000490110.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	66	2	2.08453	2.581575	3.07862	0.00689	0.0060153	0.0750118	0.0674604
chr10	68052037	68052137	4637713	0	-	0.31	(0.28,0.32]	chr10	426436	71	INTRON	INTRON	HERC4	ENSG00000148634.16	ENST00000373700.9:ENST00000412272.6:ENST00000395198.7:ENST00000473533.6:ENST00000427635.6:ENST00000513996.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	45	2	2.18975	2.58154	2.97333	0.0776042	0.00857834	0.196285	0.083729
chr8	17956103	17956153	3708072	0	+	0.32	(0.28,0.32]	chr8	343876	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PCM1	ENSG00000078674.19	ENST00000325083.13:ENST00000517730.5:ENST00000519253.5:ENST00000524226.5	protein_coding	protein_coding	protein_coding	protein_coding	2	45	2	2.18975	2.58154	2.97333	0.0776042	0.00857834	0.196285	0.083729
chr17	46157991	46158091	6784519	0	-	0.29	(0.28,0.32]	chr17	669232	7	INTRON	INTRON	KANSL1	ENSG00000120071.15	ENST00000574590.6:ENST00000572904.6:ENST00000432791.7:ENST00000575318.6:ENST00000638275.1:ENST00000262419.10:ENST00000648792.1:ENST00000639531.1:ENST00000639150.1:ENST00000639853.1:ENST00000571698.2:ENST00000639375.1:ENST00000638269.1:ENST00000576248.2:ENST00000639356.1:ENST00000574655.6:ENST00000639099.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	101	2	1.47751	2.581475	3.68544	0.0351404	9.30275e-4	0.149985	0.0279637
chr6	147258418	147258518	2989250	0	+	0.43	(0.408,0.44]	chr6	280013	188	INTRON	INTRON	STXBP5	ENSG00000164506.15	ENST00000321680.11:ENST00000367481.7:ENST00000546097.5:ENST00000367480.7	protein_coding	protein_coding	protein_coding	protein_coding	4	65	2	2.55103	2.581365	2.6117	0.00587353	0.00555224	0.0690758	0.0648867
chr21	38120627	38120720	7464094	0	-	0.473118	(0.44,0.476]	chr21	760309	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DSCR4	ENSG00000184029.9	ENST00000398948.5:ENST00000328264.7:ENST00000482032.1	lncRNA	lncRNA	lncRNA	lncRNA	13	178	2	2.17256	2.581345	2.99013	6.19207e-4	1.12551e-4	0.0223951	0.00953171
chr7	105287237	105287337	3602885	0	-	0.32	(0.28,0.32]	chr7	336144	180	INTRON	INTRON	SRPK2	ENSG00000135250.17	ENST00000393651.8:ENST00000489828.5:ENST00000482897.5:ENST00000460391.5:ENST00000462282.5:ENST00000465112.5:ENST00000482862.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	82	2	2.56765	2.581345	2.59504	0.00835086	0.00582473	0.0774402	0.0687439
chr1	160311204	160311299	571986	0	-	0.547368	(0.515,0.57]	chr1	69324	11	EXON_MRNA	EXON_MRNA:INTRON	COPA	ENSG00000122218.17	ENST00000241704.8:ENST00000696204.1:ENST00000696203.1:ENST00000696202.1:ENST00000649963.1:ENST00000696208.1:ENST00000696207.1:ENST00000696206.1:ENST00000649676.1:ENST00000368069.7:ENST00000647693.1:ENST00000649787.1:ENST00000650154.1:ENST00000647799.1:ENST00000648805.1:ENST00000647683.1:ENST00000649231.1:ENST00000648501.1:ENST00000696209.1:ENST00000696210.1:ENST00000696211.1:ENST00000647899.1:ENST00000696212.1:ENST00000696214.1:ENST00000696213.1:ENST00000696215.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	70	2	1.9072	2.581335	3.25547	0.00558759	0.00261721	0.0678837	0.0455413
chr5	1479297	1479386	2565201	0	-	0.561798	(0.515,0.57]	chr5	245692	3	SS5_PROX	SS5_PROX:INTRON	LPCAT1	ENSG00000153395.10	ENST00000475622.5:ENST00000283415.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	42	2	1.79136	2.581305	3.37125	0.0638444	0.00136343	0.177811	0.0339121
chr1	50593538	50593637	448579	0	-	0.333333	(0.32,0.35]	chr1	54213	84	INTRON	INTRON	FAF1	ENSG00000185104.21	ENST00000396153.7:ENST00000494400.5:ENST00000472808.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	76	2	2.49929	2.581155	2.66302	0.00776612	0.00542632	0.0787356	0.0645052
chr9	109038954	109039047	4311779	0	-	0.451613	(0.44,0.476]	chr9	396312	10	EXON_MRNA	EXON_MRNA:INTRON	TMEM245	ENSG00000106771.13	ENST00000374586.8:ENST00000472207.5:ENST00000413712.6:ENST00000491854.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	58	2	1.61163	2.581155	3.55068	0.0598319	7.06861e-4	0.169278	0.0241881
chr16	74597070	74597170	6525232	0	-	0.48	(0.476,0.515]	chr16	631842	339	INTRON	INTRON	GLG1	ENSG00000090863.12	ENST00000205061.9:ENST00000422840.7:ENST00000447066.6:ENST00000562090.5:ENST00000567951.5:ENST00000627032.2:ENST00000565260.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	65	2	1.82798	2.58107	3.33416	0.0184548	0.00230489	0.116598	0.0428247
chr1	39880578	39880677	428244	0	-	0.464646	(0.44,0.476]	chr1	52034	41	INTRON	INTRON	TRIT1	ENSG00000043514.17	ENST00000316891.10:ENST00000648678.1:ENST00000537440.5:ENST00000372818.5:ENST00000462797.5:ENST00000441669.6:ENST00000495175.6:ENST00000491865.5:ENST00000541099.5:ENST00000492612.6:ENST00000489945.5:ENST00000486825.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	48	2	1.9039	2.580955	3.25801	0.0501498	0.00248185	0.156383	0.0460771
chr2	15525744	15525844	1072806	0	-	0.19	[0,0.28]	chr2	114441	140	INTRON	INTRON	NBAS	ENSG00000151779.13	ENST00000281513.10	protein_coding	protein_coding	protein_coding	protein_coding	9	139	2	1.85489	2.58092	3.30695	0.00635591	0.00469836	0.0723675	0.0600108
chr6	57113293	57113393	2878291	0	+	0.35	(0.32,0.35]	chr6	273249	37	INTRON	INTRON	ZNF451	ENSG00000112200.17	ENST00000515290.5:ENST00000510483.5:ENST00000357489.7:ENST00000370702.5:ENST00000444273.6:ENST00000370711.9:ENST00000370706.9:ENST00000491832.6:ENST00000502749.1:ENST00000504603.1:ENST00000509071.5:ENST00000509251.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	67	2	2.2643	2.580865	2.89743	0.0127608	0.00712852	0.0926667	0.0756118
chr9	130760754	130760854	4214332	0	+	0.5	(0.476,0.515]	chr9	386427	459	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000393293.4	protein_coding	protein_coding	protein_coding	protein_coding	4	57	2	2.16306	2.5807900000000004	2.99852	0.00973468	0.0077575	0.0877284	0.0757402
chr8	17248209	17248309	3707161	0	+	0.38	(0.378,0.408]	chr8	343722	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	VPS37A	ENSG00000155975.10	ENST00000519381.1:ENST00000520140.5:ENST00000518038.1:ENST00000324849.9:ENST00000425020.6:ENST00000521829.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	69	2	2.15574	2.58071	3.00568	0.00811866	0.00519611	0.0766625	0.0654762
chr10	125095500	125095599	4713685	0	-	0.575758	(0.57,1]	chr10	434903	68	INTRON	INTRON	CTBP2	ENSG00000175029.17	ENST00000337195.9:ENST00000411419.6:ENST00000494626.6:ENST00000531469.5:ENST00000460976.5:ENST00000476817.1:ENST00000530884.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	55	2	2.34591	2.5807	2.81549	0.00182871	3.90081e-4	0.0386771	0.0177751
chr6	37822115	37822215	2857056	0	+	0.51	(0.476,0.515]	chr6	270225	17	INTRON	INTRON	ZFAND3	ENSG00000156639.12	ENST00000287218.9:ENST00000373391.6:ENST00000474522.5	protein_coding	protein_coding	protein_coding	protein_coding	4	58	2	2.3346	2.5806649999999998	2.82673	0.0134403	0.00494807	0.0946278	0.0646039
chr11	74188172	74188272	4826690	0	+	0.43	(0.408,0.44]	chr11	450450	163	INTRON	INTRON	PPME1	ENSG00000214517.10	ENST00000542710.3:ENST00000328257.13:ENST00000398427.6:ENST00000544401.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	75	2	1.60905	2.5806	3.55215	0.02971	7.01039e-4	0.129022	0.0241881
chr1	50826555	50826655	450918	0	-	0.31	(0.28,0.32]	chr1	54261	245	INTRON	INTRON	FAF1	ENSG00000185104.21	ENST00000396153.7:ENST00000487898.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	46	2	2.38101	2.5805249999999997	2.78004	0.0456017	0.0193244	0.164236	0.108861
chr1	28510990	28511089	57225	0	+	0.454545	(0.44,0.476]	chr1	7392	2	INTRON	INTRON	RCC1	ENSG00000180198.17	ENST00000398958.6:ENST00000649185.1:ENST00000427469.5:ENST00000683442.1:ENST00000434290.6:ENST00000373833.10:ENST00000419074.5	protein_coding	protein_coding	protein_coding	protein_coding	8	118	2	2.33743	2.58047	2.82351	0.00191049	0.00103188	0.0403772	0.029231300000000002
chr2	135853705	135853802	1233653	0	-	0.329897	(0.32,0.35]	chr2	131287	4	INTRON	INTRON	MCM6	ENSG00000076003.5	ENST00000264156.3:ENST00000492091.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	56	2	2.1362	2.58045	3.0247	0.0291083	0.00671684	0.128029	0.0738715
chr16	7985284	7985384	6440361	0	-	0.47	(0.44,0.476]	chr16	620345	70	INTRON	INTRON	ENSG00000260289	ENSG00000260289.2	ENST00000670665.1:ENST00000654046.1:ENST00000567103.2	lncRNA	lncRNA	lncRNA	lncRNA	4	57	2	2.03266	2.580325	3.12799	0.0155853	0.0050635	0.109411	0.0621733
chr17	49049838	49049936	6625152	0	+	0.316327	(0.28,0.32]	chr17	646681	5	UTR3	UTR3:EXON_MRNA	IGF2BP1	ENSG00000159217.10	ENST00000290341.8	protein_coding	protein_coding	protein_coding	protein_coding	7	125	2	2.26355	2.5803149999999997	2.89708	0.00257346	0.00229405	0.0451443	0.0439319
chr12	120461757	120461844	5433937	0	-	0.321839	(0.32,0.35]	chr12	519494	2	UTR3	UTR3:EXON_MRNA	SRSF9	ENSG00000111786.9	ENST00000229390.8:ENST00000548326.1:ENST00000548792.1:ENST00000603963.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	104	2	2.10207	2.580075	3.05808	0.0089151	7.67153e-4	0.0799896	0.0254532
chr12	79924002	79924102	5376424	0	-	0.38	(0.378,0.408]	chr12	512797	102	INTRON	INTRON	PPP1R12A	ENSG00000058272.19	ENST00000261207.9:ENST00000450142.7:ENST00000437004.6:ENST00000550107.5:ENST00000547330.5:ENST00000550510.5	protein_coding	protein_coding	protein_coding	protein_coding	6	92	2	2.49361	2.58002	2.66643	0.00470023	0.00109695	0.0600108	0.0303708
chr2	86968432	86968530	824687	0	+	0.479592	(0.476,0.515]	chr2	92143	49	INTRON	INTRON	RGPD1	ENSG00000187627.17	ENST00000409776.6:ENST00000398193.8:ENST00000641458.2	protein_coding	protein_coding	protein_coding	protein_coding	12	155	2	1.89142	2.5799849999999998	3.26855	0.00281406	6.60703e-5	0.0489366	0.0071649
chr1	185060979	185061079	275713	0	+	0.54	(0.515,0.57]	chr1	32263	143	INTRON	INTRON	RNF2	ENSG00000121481.11	ENST00000367509.8:ENST00000498201.1:ENST00000367510.8:ENST00000453650.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	57	2	1.48539	2.57996	3.67453	0.0553982	3.27949e-4	0.165463	0.0160995
chr1	84659942	84660040	496462	0	-	0.438776	(0.408,0.44]	chr1	58854	11	INTRON	INTRON	SSX2IP	ENSG00000117155.17	ENST00000342203.8:ENST00000437941.6:ENST00000481102.5:ENST00000476905.6:ENST00000605755.5:ENST00000603677.1:ENST00000460500.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	107	2	2.42404	2.57995	2.73586	0.00413548	2.9686e-4	0.0566868	0.0154293
chr1	32377041	32377141	415011	0	-	0.6	(0.57,1]	chr1	50052	3	SS3_PROX	SS3_PROX:INTRON	BSDC1	ENSG00000160058.19	ENST00000455895.7:ENST00000444377.5:ENST00000341071.11:ENST00000526031.5:ENST00000419121.6:ENST00000446293.6:ENST00000373520.8:ENST00000527513.5:ENST00000527163.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	32	2	1.52865	2.579945	3.63124	0.0730445	2.87208e-4	0.189414	0.0150568
chr11	34054549	34054644	4767676	0	+	0.505263	(0.476,0.515]	chr11	440943	5	INTRON	INTRON	CAPRIN1	ENSG00000135387.21	ENST00000341394.9:ENST00000528856.5:ENST00000389645.7:ENST00000534042.5:ENST00000534825.5:ENST00000532820.5:ENST00000530820.5:ENST00000529307.1:ENST00000526494.5:ENST00000532755.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	114	2	1.93591	2.57992	3.22393	0.0038383	3.84737e-4	0.0562562	0.0182343
chr12	68611855	68611955	5161214	0	+	0.4	(0.378,0.408]	chr12	488573	4	INTRON	INTRON	RAP1B	ENSG00000127314.18	ENST00000460800.5:ENST00000393436.9:ENST00000250559.14:ENST00000425247.6:ENST00000501412.2:ENST00000450214.6:ENST00000463493.5:ENST00000537460.5:ENST00000341355.9:ENST00000538283.5:ENST00000541167.5:ENST00000422358.6:ENST00000489473.6:ENST00000545270.5:ENST00000538980.5:ENST00000543393.5:ENST00000542018.5:ENST00000540209.5:ENST00000378985.7:ENST00000453560.6:ENST00000534899.5:ENST00000542145.5:ENST00000539091.5:ENST00000535492.5:ENST00000540781.5:ENST00000485252.6:ENST00000538877.5:ENST00000541386.5:ENST00000543697.5:ENST00000545720.6:ENST00000541216.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	76	2	1.92269	2.579885	3.23708	0.00836891	0.00365053	0.0822143	0.0535094
chr7	5996330	5996429	3475716	0	-	0.515152	(0.476,0.515]	chr7	325110	3	INTRON	INTRON	PMS2	ENSG00000122512.16	ENST00000265849.12:ENST00000441476.6:ENST00000642292.1:ENST00000642456.1:ENST00000643595.1:ENST00000382321.5:ENST00000644110.1:ENST00000406569.7:ENST00000469652.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	65	2	1.91368	2.5798200000000002	3.24596	0.0135123	0.00322919	0.101363	0.0507087
chr20	63874515	63874615	7300780	0	+	0.49	(0.476,0.515]	chr20	743102	3	INTRON	INTRON	TPD52L2	ENSG00000101150.18	ENST00000611972.4:ENST00000615907.4:ENST00000369927.8:ENST00000346249.9:ENST00000348257.9:ENST00000352482.8:ENST00000351424.8:ENST00000217121.9:ENST00000358548.4	protein_coding	protein_coding	protein_coding	protein_coding	4	64	2	2.26789	2.57977	2.89165	0.0176567	0.00142068	0.105233	0.034662
chr8	129523775	129523874	4060520	0	-	0.353535	(0.35,0.378]	chr8	369648	132	INTRON	INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1:ENST00000676273.1:ENST00000667643.1:ENST00000668791.1:ENST00000663716.1:ENST00000663572.1:ENST00000676148.1:ENST00000667962.1:ENST00000674877.1:ENST00000675316.1:ENST00000674656.1:ENST00000446592.7:ENST00000667341.1:ENST00000675186.1:ENST00000652971.1:ENST00000661447.1:ENST00000674863.1:ENST00000675498.1:ENST00000675527.1:ENST00000676108.1:ENST00000657647.1:ENST00000675589.1:ENST00000675913.1:ENST00000675109.1:ENST00000671632.1:ENST00000671311.1:ENST00000676099.1:ENST00000660652.1:ENST00000675522.1:ENST00000675183.1:ENST00000658861.1:ENST00000663991.1:ENST00000675044.1:ENST00000675435.1:ENST00000674639.1:ENST00000676069.1:ENST00000675532.1:ENST00000674762.1:ENST00000523151.6:ENST00000675948.1:ENST00000665364.1:ENST00000657251.1:ENST00000675166.1:ENST00000674883.1:ENST00000675867.1:ENST00000674580.1:ENST00000675393.1:ENST00000520048.1:ENST00000674906.1:ENST00000676030.1:ENST00000670588.1:ENST00000675072.1:ENST00000664936.1:ENST00000652914.1:ENST00000657069.1	lncRNA	lncRNA	lncRNA	lncRNA	3	54	2	1.90405	2.57977	3.25549	0.0482651	0.00363602	0.171852	0.0535085
chr2	111333715	111333815	1210182	0	-	0.42	(0.408,0.44]	chr2	128869	18	INTRON	INTRON	MIR4435-2HG	ENSG00000172965.17	ENST00000645030.2:ENST00000642191.1:ENST00000673798.1:ENST00000645051.2:ENST00000673649.1:ENST00000673962.1:ENST00000674132.1:ENST00000669658.1:ENST00000669917.1:ENST00000661559.1:ENST00000653687.1:ENST00000667670.1:ENST00000609220.2:ENST00000656760.1:ENST00000609902.6:ENST00000666683.1:ENST00000674070.1:ENST00000662335.1:ENST00000664422.1:ENST00000673775.1:ENST00000662889.1:ENST00000665096.1:ENST00000674092.1:ENST00000673958.1:ENST00000673770.1:ENST00000673961.1:ENST00000658936.1:ENST00000662635.1:ENST00000666204.1:ENST00000659458.1:ENST00000664443.1:ENST00000670295.1:ENST00000661655.1:ENST00000666390.1:ENST00000659079.1:ENST00000660442.1:ENST00000664009.1:ENST00000439362.6:ENST00000654473.1:ENST00000664999.1:ENST00000673728.1:ENST00000659791.1:ENST00000666144.1:ENST00000659933.1:ENST00000670715.1:ENST00000656303.1:ENST00000666367.1:ENST00000666652.1:ENST00000669050.1:ENST00000667218.1:ENST00000656067.1:ENST00000653568.1:ENST00000643013.1:ENST00000673866.1:ENST00000673700.1:ENST00000443467.6:ENST00000451884.6:ENST00000669875.1:ENST00000673653.1:ENST00000673988.1:ENST00000661945.1:ENST00000669515.1:ENST00000431385.6:ENST00000655573.1:ENST00000656416.1:ENST00000662384.1:ENST00000674037.1:ENST00000432818.5:ENST00000674013.1:ENST00000673843.1:ENST00000661707.1:ENST00000444301.5:ENST00000673964.1:ENST00000673959.1:ENST00000673845.1:ENST00000673756.1	lncRNA	lncRNA	lncRNA	lncRNA	6	89	2	1.84516	2.579755	3.31435	0.0193431	1.71418e-4	0.108861	0.0113605
chr3	196048784	196048884	1897193	0	-	0.36	(0.35,0.378]	chr3	189884	212	INTRON	INTRON	TFRC	ENSG00000072274.13	ENST00000426789.5	protein_coding	protein_coding	protein_coding	protein_coding	4	72	2	2.39583	2.5796799999999998	2.76353	0.0107976	0.00343059	0.0920575	0.0517761
chr6	135014797	135014897	3225066	0	-	0.4	(0.378,0.408]	chr6	299837	116	INTRON	INTRON	HBS1L	ENSG00000112339.15	ENST00000367837.10:ENST00000527578.5:ENST00000415177.6:ENST00000367826.6:ENST00000533274.5:ENST00000526100.5:ENST00000529641.5:ENST00000527507.1:ENST00000314674.7:ENST00000524715.5:ENST00000529882.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	126	2	2.3043	2.5796799999999998	2.85506	0.0035117	1.57998e-4	0.0525467	0.0108029
chr17	46557055	46557155	6786504	0	-	0.34	(0.32,0.35]	chr17	669357	44	UTR3	UTR3:EXON_MRNA:INTRON	ARL17A	ENSG00000185829.18	ENST00000445552.6:ENST00000622488.6:ENST00000329240.10:ENST00000573185.5:ENST00000570550.5:ENST00000336125.6	protein_coding	protein_coding	protein_coding	protein_coding	3	56	2	2.07985	2.5796	3.07935	0.0303092	0.00724137	0.143025	0.0729826
chr17	64489237	64489337	6815697	0	-	0.35	(0.32,0.35]	chr17	673761	3	SS3_PROX	SS3_PROX:INTRON	POLG2	ENSG00000256525.8	ENST00000539111.7:ENST00000581355.1:ENST00000671755.1:ENST00000673460.1:ENST00000585104.2:ENST00000577506.5:ENST00000585141.5:ENST00000578687.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	56	2	2.07985	2.5796	3.07935	0.0303092	0.00724137	0.143025	0.0729826
chr11	34068737	34068837	4767822	0	+	0.29	(0.28,0.32]	chr11	440959	50	INTRON	INTRON	CAPRIN1	ENSG00000135387.21	ENST00000341394.9:ENST00000528856.5:ENST00000389645.7:ENST00000534042.5:ENST00000534825.5:ENST00000532820.5:ENST00000530820.5:ENST00000529307.1:ENST00000526494.5:ENST00000532755.5:ENST00000533641.5:ENST00000530008.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	60	2	2.24061	2.57956	2.91851	0.0194267	0.0130672	0.119831	0.093385
chr6	157038868	157038968	3009786	0	+	0.5	(0.476,0.515]	chr6	281145	16	INTRON	INTRON	ARID1B	ENSG00000049618.24	ENST00000346085.10:ENST00000636930.2:ENST00000647938.1:ENST00000350026.10:ENST00000674298.1:ENST00000674190.1:ENST00000414678.7:ENST00000319584.11:ENST00000452544.2:ENST00000637887.1:ENST00000635849.1:ENST00000637003.1:ENST00000637904.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	64	2	2.53671	2.579535	2.62236	0.00624027	0.00517	0.0718843	0.0631506
chr20	5593026	5593126	7312162	0	-	0.32	(0.28,0.32]	chr20	744601	3	SS5_PROX	SS5_PROX:INTRON	GPCPD1	ENSG00000125772.14	ENST00000379019.7:ENST00000481690.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	92	2	1.69688	2.57949	3.4621	0.0219684	0.00218379	0.123836	0.0417893
chr19	5080021	5080116	7004538	0	+	0.642105	(0.57,1]	chr19	694845	10	INTRON	INTRON	KDM4B	ENSG00000127663.15	ENST00000159111.9:ENST00000611640.4:ENST00000381759.8:ENST00000536461.5:ENST00000592175.5:ENST00000589104.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	39	2	1.73563	2.5794300000000003	3.42323	0.017048	8.58388e-4	0.110899	0.0267428
chr15	77409508	77409608	6237528	0	-	0.33	(0.32,0.35]	chr15	595315	439	INTRON	INTRON	PEAK1	ENSG00000173517.11	ENST00000560626.6:ENST00000682557.1:ENST00000558305.5:ENST00000564328.5:ENST00000567808.5:ENST00000567337.5:ENST00000569159.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	41	2	2.37794	2.5793350000000004	2.78073	0.0498601	0.01481	0.156383	0.106702
chr1	65431207	65431302	137294	0	+	0.326316	(0.32,0.35]	chr1	15489	8	INTRON	INTRON	LEPROT:LEPR	ENSG00000213625.9:ENSG00000116678.20	ENST00000475108.5:ENST00000371060.7:ENST00000371059.7:ENST00000349533.11:ENST00000371065.9:ENST00000488747.5:ENST00000613538.1	protein_coding	protein_coding	protein_coding	protein_coding	7	115	2	1.82067	2.57931	3.33795	0.0163349	1.93e-4	0.101571	0.012131
chr1	46351967	46352067	96790	0	+	0.33	(0.32,0.35]	chr1	13008	45	INTRON	INTRON	NSUN4	ENSG00000117481.11	ENST00000307089.7:ENST00000486270.5:ENST00000474844.6:ENST00000469918.5:ENST00000537428.2:ENST00000498008.5:ENST00000495427.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	41	2	2.4458	2.5792450000000002	2.71269	0.0425977	0.0181461	0.148082	0.114853
chr1	154264702	154264802	227998	0	+	0.34	(0.32,0.35]	chr1	26361	13	INTRON	INTRON	UBAP2L	ENSG00000143569.19	ENST00000271877.11:ENST00000428931.6:ENST00000361546.6:ENST00000433615.5:ENST00000428595.1:ENST00000493867.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	41	2	2.4458	2.5792450000000002	2.71269	0.0425977	0.0181461	0.148082	0.114853
chr16	21871379	21871478	6461957	0	-	0.343434	(0.32,0.35]	chr16	623467	52	INTRON	INTRON	NPIPB4	ENSG00000185864.18	ENST00000543449.1:ENST00000538859.1	protein_coding	processed_transcript	protein_coding	processed_transcript	2	41	2	2.4458	2.5792450000000002	2.71269	0.0425977	0.0181461	0.148082	0.114853
chr9	4800009	4800109	4094936	0	+	0.33	(0.32,0.35]	chr9	373155	64	INTRON	INTRON	RCL1	ENSG00000120158.12	ENST00000381750.9:ENST00000381732.3:ENST00000442869.5:ENST00000473230.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	41	2	2.4458	2.5792450000000002	2.71269	0.0425977	0.0181461	0.148082	0.114853
chr16	89488037	89488137	6543577	0	-	0.31	(0.28,0.32]	chr16	634281	564	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	192	2	2.44123	2.579015	2.7168	0.00165244	2.41196e-4	0.0369207	0.0136674
chr22	30905137	30905236	7501218	0	+	0.454545	(0.44,0.476]	chr22	765276	108	INTRON	INTRON	OSBP2	ENSG00000184792.16	ENST00000438716.3:ENST00000407373.5:ENST00000403222.7:ENST00000332585.11:ENST00000446658.6:ENST00000401475.5:ENST00000437268.6:ENST00000535268.5:ENST00000431368.5:ENST00000452656.5	protein_coding	protein_coding	protein_coding	protein_coding	3	49	2	2.33899	2.578975	2.81896	0.0142027	0.0120766	0.0962311	0.0959987
chr17	45160275	45160372	6782308	0	-	0.319588	(0.28,0.32]	chr17	669035	2	EXON_LNCRNA	EXON_LNCRNA:INTRON	HEXIM2-AS1	ENSG00000224505.3	ENST00000589950.1:ENST00000452741.2:ENST00000692869.1:ENST00000693014.1	lncRNA	lncRNA	lncRNA	lncRNA	4	75	2	2.03106	2.5789299999999997	3.1268	0.0208123	0.00508956	0.111549	0.0646039
chr21	37074566	37074665	7404833	0	+	0.40404	(0.378,0.408]	chr21	754521	7	INTRON	INTRON	TTC3	ENSG00000182670.14	ENST00000492275.6:ENST00000418766.6:ENST00000485402.5:ENST00000450533.6:ENST00000438055.5:ENST00000696812.1:ENST00000696811.1:ENST00000463216.6:ENST00000481605.6:ENST00000540756.5:ENST00000494243.5:ENST00000399010.5:ENST00000411496.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	140	2	2.51112	2.57889	2.64666	7.52405e-4	5.0824e-4	0.0251179	0.0202333
chr17	42999383	42999474	6613158	0	+	0.384615	(0.378,0.408]	chr17	644682	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPL27	ENSG00000131469.15	ENST00000589037.5:ENST00000253788.12:ENST00000593262.1:ENST00000588830.1:ENST00000589913.6:ENST00000590864.2:ENST00000586277.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	82	2	2.45465	2.578815	2.70298	0.00381582	0.00325723	0.0542786	0.0524329
chr13	45341630	45341730	5479936	0	+	0.61	(0.57,1]	chr13	524989	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	TPT1-AS1	ENSG00000170919.16	ENST00000517509.5:ENST00000658870.1:ENST00000653307.1:ENST00000661180.1:ENST00000655984.1:ENST00000654229.1:ENST00000519454.6:ENST00000412946.6:ENST00000665586.1:ENST00000520590.5:ENST00000521336.6:ENST00000655666.1:ENST00000669281.1:ENST00000520622.6:ENST00000657761.1:ENST00000668209.1:ENST00000659577.1:ENST00000523506.6:ENST00000661291.1:ENST00000655385.1:ENST00000652823.1:ENST00000524062.5:ENST00000655124.1:ENST00000662212.1:ENST00000522859.5:ENST00000664881.1:ENST00000669627.1:ENST00000520924.5:ENST00000618947.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	4	34	2	2.42282	2.57878	2.73474	0.00879576	0.00241874	0.0790073	0.0454275
chr19	800577	800676	6992126	0	+	0.585859	(0.57,1]	chr19	692237	6	INTRON	INTRON	PTBP1	ENSG00000011304.22	ENST00000635647.1:ENST00000627714.2:ENST00000676227.1:ENST00000677277.1:ENST00000592804.2:ENST00000349038.8:ENST00000590887.5:ENST00000586481.5:ENST00000586944.5:ENST00000356948.11:ENST00000394601.8:ENST00000589575.5:ENST00000587191.3:ENST00000679114.1:ENST00000350092.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	52	2	1.80424	2.57876	3.35328	0.0129439	8.52328e-5	0.0991015	0.00825602
chr3	183984135	183984231	1882279	0	-	0.458333	(0.44,0.476]	chr3	188191	5	UTR3	UTR3:EXON_MRNA:INTRON	ABCC5	ENSG00000114770.17	ENST00000334444.11:ENST00000265586.10:ENST00000437205.5:ENST00000382494.6:ENST00000392579.6:ENST00000443376.5:ENST00000427120.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	167	2	2.27755	2.57872	2.87989	0.00100696	9.75859e-5	0.0292522	0.00889684
chr10	45994429	45994529	4430606	0	+	0.46	(0.44,0.476]	chr10	408492	52	INTRON	INTRON	TIMM23	ENSG00000265354.4	ENST00000580018.4	protein_coding	protein_coding	protein_coding	protein_coding	4	57	2	2.12992	2.578715	3.02751	0.010975	0.00715968	0.092635	0.0723634
chr22	26527050	26527145	7564424	0	-	0.463158	(0.44,0.476]	chr22	773994	4	INTRON	INTRON	TPST2	ENSG00000128294.16	ENST00000338754.9:ENST00000403880.5:ENST00000398110.6	protein_coding	protein_coding	protein_coding	protein_coding	4	57	2	2.12992	2.578715	3.02751	0.010975	0.00715968	0.092635	0.0723634
chr6	17673017	17673116	3065869	0	-	0.454545	(0.44,0.476]	chr6	284852	31	INTRON	INTRON	NUP153	ENSG00000124789.12	ENST00000613258.4:ENST00000537253.5:ENST00000262077.3	protein_coding	protein_coding	protein_coding	protein_coding	4	57	2	2.12992	2.578715	3.02751	0.010975	0.00715968	0.092635	0.0723634
chr16	15700400	15700491	6307402	0	+	0.417582	(0.408,0.44]	chr16	603479	7	UTR3	UTR3:EXON_MRNA:INTRON	NDE1	ENSG00000072864.16	ENST00000396355.5:ENST00000674888.1:ENST00000675171.1:ENST00000675951.1:ENST00000674900.1:ENST00000674588.1:ENST00000674538.1:ENST00000396354.6:ENST00000675926.1:ENST00000674995.1:ENST00000674554.1:ENST00000674581.1:ENST00000577101.6:ENST00000572756.6:ENST00000573694.5:ENST00000576502.5:ENST00000572967.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	93	2	2.48326	2.57859	2.67392	0.00324772	0.00106946	0.0508595	0.0300133
chr17	50750937	50751026	6627308	0	+	0.235955	[0,0.28]	chr17	647264	1	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	LUC7L3	ENSG00000108848.16	ENST00000393227.6:ENST00000505658.6:ENST00000240304.5:ENST00000508482.5:ENST00000509487.1:ENST00000511974.5:ENST00000513969.5:ENST00000503728.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	230	2	2.08597	2.578545	3.07112	0.00186359	5.61931e-4	0.0399675	0.0219303
chr21	9121466	9121566	7426554	0	-	0.23	[0,0.28]	chr21	757579	332	INTRON	INTRON	TEKT4P2	ENSG00000188681.12	ENST00000690061.1:ENST00000689141.1:ENST00000688310.1:ENST00000687537.1:ENST00000690096.1:ENST00000687888.1:ENST00000690389.1:ENST00000684989.1:ENST00000416067.6:ENST00000693307.1:ENST00000692383.1:ENST00000685666.1:ENST00000688451.1:ENST00000691190.1:ENST00000685532.1:ENST00000687488.1:ENST00000690713.1:ENST00000691834.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	5	96	2	1.60593	2.578525	3.55112	0.0433625	0.00205086	0.162255	0.0409264
chr12	49324907	49325000	5132847	0	+	0.419355	(0.408,0.44]	chr12	483901	5	INTRON	INTRON	TROAP	ENSG00000135451.13	ENST00000551245.5:ENST00000257909.8:ENST00000549891.5:ENST00000550346.5:ENST00000546735.5:ENST00000546776.5:ENST00000551192.5:ENST00000547807.5:ENST00000551567.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	123	2	1.76662	2.5785150000000003	3.39041	0.00636414	1.80518e-4	0.0724478	0.0121877
chr1	11025010	11025109	24692	0	+	0.333333	(0.32,0.35]	chr1	2610	18	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	TARDBP	ENSG00000120948.19	ENST00000240185.8:ENST00000614757.4:ENST00000473869.5:ENST00000611136.4:ENST00000477447.6:ENST00000612542.1:ENST00000620505.1:ENST00000611008.4:ENST00000613177.1:ENST00000622108.1:ENST00000496840.1:ENST00000480464.2:ENST00000620028.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	124	2	2.48231	2.5784849999999997	2.67466	0.00182361	0.00132969	0.0386141	0.0335108
chr6	33274211	33274309	2846794	0	+	0.540816	(0.515,0.57]	chr6	268612	11	INTRON	INTRON	RPS18	ENSG00000231500.7	ENST00000439602.7:ENST00000474973.5:ENST00000474626.5:ENST00000476222.5:ENST00000496813.5:ENST00000490191.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	22	281	2	2.57485	2.57845	2.58205	8.59846e-5	1.40603e-5	0.00783027	0.00299006
chr1	247321104	247321203	684351	0	-	0.545455	(0.515,0.57]	chr1	80224	74	INTRON	INTRON	ZNF496	ENSG00000162714.13	ENST00000294753.8:ENST00000682384.1:ENST00000461277.2	protein_coding	protein_coding	protein_coding	protein_coding	6	81	2	2.36534	2.578435	2.79153	0.00404547	6.28135e-4	0.0578376	0.023031
chr8	144887202	144887302	4087394	0	-	0.38	(0.378,0.408]	chr8	372306	3	SS3_PROX	SS3_PROX:INTRON	ZNF250	ENSG00000196150.14	ENST00000528258.5:ENST00000529780.5:ENST00000533543.5:ENST00000292579.11:ENST00000417550.7:ENST00000533221.5:ENST00000533622.5:ENST00000525694.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	80	2	2.13797	2.578415	3.01886	0.0124882	7.99379e-4	0.0923444	0.0258804
chr12	116233052	116233151	5425103	0	-	0.363636	(0.35,0.378]	chr12	518281	5	INTRON	INTRON	MED13L	ENSG00000123066.9	ENST00000281928.9:ENST00000650226.1:ENST00000548743.2:ENST00000647567.1:ENST00000551197.2:ENST00000649627.1:ENST00000648067.1:ENST00000650496.1:ENST00000648593.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	140	2	2.33614	2.57841	2.82068	0.00084924900000000005	8.17323e-4	0.0267232	0.0261265
chr15	68166790	68166889	6057089	0	+	0.393939	(0.378,0.408]	chr15	576602	16	INTRON	INTRON	PIAS1	ENSG00000033800.14	ENST00000249636.11:ENST00000545237.1	protein_coding	protein_coding	protein_coding	protein_coding	4	69	2	2.35527	2.57841	2.80155	0.0121511	0.00278307	0.0963966	0.0469265
chr2	44360978	44361077	1111107	0	-	0.474747	(0.44,0.476]	chr2	119244	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PREPL	ENSG00000138078.16	ENST00000409411.6:ENST00000541738.5:ENST00000409957.5:ENST00000409936.5:ENST00000409272.5:ENST00000410081.5:ENST00000540817.1:ENST00000438314.1:ENST00000477410.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	128	2	2.38498	2.578335	2.77169	8.89744e-4	5.64944e-4	0.0274757	0.0217075
chr1	235230712	235230812	662880	0	-	0.53	(0.515,0.57]	chr1	78505	2	SS5_PROX	SS5_PROX:INTRON	ARID4B	ENSG00000054267.22	ENST00000349213.7:ENST00000366603.6:ENST00000264183.9:ENST00000421364.5:ENST00000491632.5:ENST00000471257.5:ENST00000418304.1:ENST00000466653.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	41	2	2.1885	2.5783199999999997	2.96814	0.0202537	0.00756432	0.121364	0.0749063
chr3	187013406	187013506	1587011	0	+	0.52	(0.515,0.57]	chr3	164349	70	INTRON	INTRON	ST6GAL1	ENSG00000073849.16	ENST00000676786.1:ENST00000169298.8:ENST00000457772.6:ENST00000455441.5:ENST00000427315.5:ENST00000677292.1:ENST00000458216.5:ENST00000430309.5:ENST00000417392.5:ENST00000438590.5:ENST00000448408.5:ENST00000676633.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	41	2	2.1885	2.5783199999999997	2.96814	0.0202537	0.00756432	0.121364	0.0749063
chr11	65497786	65497885	4806121	0	+	0.656566	(0.57,1]	chr11	446569	2	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	MALAT1	ENSG00000251562.9	ENST00000619449.2:ENST00000534336.1:ENST00000688218.1:ENST00000689729.1:ENST00000693503.1:ENST00000692086.1:ENST00000685846.1:ENST00000690116.1	lncRNA	lncRNA	lncRNA	lncRNA	13	96	2	2.09326	2.57829	3.06332	9.08895e-4	6.87247e-6	0.0278396	0.0018635
chr5	82012953	82013053	2403112	0	+	0.47	(0.44,0.476]	chr5	232116	206	INTRON	INTRON	ATG10	ENSG00000152348.16	ENST00000282185.8:ENST00000355178.8:ENST00000458350.7:ENST00000513443.5:ENST00000504770.5:ENST00000513634.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	37	2	2.29425	2.57828	2.86231	0.0518406	0.012214	0.176696	0.0910127
chr4	1725152	1725250	1910169	0	+	0.602041	(0.57,1]	chr4	191575	9	INTRON	INTRON	TACC3	ENSG00000013810.21	ENST00000458173.4:ENST00000651472.1:ENST00000612220.5:ENST00000484651.5:ENST00000313288.9:ENST00000467746.6:ENST00000493975.5:ENST00000652770.1:ENST00000651251.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	26	2	2.02391	2.5782249999999998	3.13254	0.0339274	0.00310655	0.134508	0.0512344
chr11	2948726	2948826	4891536	0	-	0.4	(0.378,0.408]	chr11	458262	1	SS5_PROX	SS5_PROX:INTRON	NAP1L4	ENSG00000205531.13	ENST00000620138.4:ENST00000380542.9:ENST00000469805.5:ENST00000469089.5:ENST00000526115.5:ENST00000492594.6:ENST00000526023.5:ENST00000492685.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	164	2	2.36489	2.5782049999999996	2.79152	4.21948e-4	3.68282e-4	0.0183838	0.0178217
chr18	36145847	36145947	6891592	0	+	0.34	(0.32,0.35]	chr18	683015	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	ELP2	ENSG00000134759.14	ENST00000351393.10:ENST00000442325.6:ENST00000358232.11:ENST00000423854.6:ENST00000539560.5:ENST00000350494.10:ENST00000542824.5:ENST00000540799.1:ENST00000535093.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	57	2	2.4458	2.5781650000000003	2.71053	0.0425977	0.00346747	0.148082	0.0539802
chr7	6433815	6433904	3477847	0	-	0.449438	(0.44,0.476]	chr7	325413	5	INTRON	INTRON	DAGLB	ENSG00000164535.15	ENST00000297056.11:ENST00000425398.6:ENST00000436575.5:ENST00000454738.5:ENST00000432248.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	48	2	2.0776	2.5781099999999997	3.07862	0.0292951	0.0060153	0.141862	0.0674604
chr5	10372114	10372214	2317831	0	+	0.24	[0,0.28]	chr5	224612	171	INTRON	INTRON	MARCHF6	ENSG00000145495.16	ENST00000274140.10:ENST00000449913.6:ENST00000502795.5:ENST00000511802.5:ENST00000503788.5:ENST00000640713.1:ENST00000510872.5:ENST00000507863.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	69	2	2.56073	2.578105	2.59548	0.0346067	0.00743095	0.136649	0.0772645
chr5	131381244	131381344	2485813	0	+	0.36	(0.35,0.378]	chr5	237134	213	INTRON	INTRON	CDC42SE2	ENSG00000158985.14	ENST00000395246.5:ENST00000505065.2:ENST00000503291.5:ENST00000360515.7	protein_coding	protein_coding	protein_coding	protein_coding	4	64	2	2.43108	2.5780250000000002	2.72497	0.0198266	0.00345501	0.109608	0.0539802
chr16	74604159	74604259	6525303	0	-	0.35	(0.32,0.35]	chr16	631842	410	INTRON	INTRON	GLG1	ENSG00000090863.12	ENST00000205061.9:ENST00000422840.7:ENST00000447066.6:ENST00000562090.5:ENST00000567951.5:ENST00000627032.2:ENST00000565260.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	208	2	2.33253	2.578005	2.82348	0.00106015	1.09224e-4	0.0298078	0.00884858
chr1	246152172	246152272	677154	0	-	0.6	(0.57,1]	chr1	79721	559	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000391836.3:ENST00000453676.5:ENST00000462422.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	26	2	2.23711	2.5780000000000003	2.91889	0.0172108	0.00719009	0.104099	0.0756118
chr19	48327022	48327121	7087408	0	+	0.484848	(0.476,0.515]	chr19	709200	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	EMP3	ENSG00000142227.11	ENST00000599704.5:ENST00000596315.5:ENST00000594198.1:ENST00000597529.1:ENST00000270221.11:ENST00000599255.5:ENST00000597279.5:ENST00000593437.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	92	2	2.56291	2.577975	2.59304	0.00222582	0.00158794	0.0421176	0.0367961
chr5	69170576	69170672	2380013	0	+	0.364583	(0.35,0.378]	chr5	229157	19	INTRON	INTRON	CCNB1	ENSG00000134057.15	ENST00000506572.5:ENST00000256442.10:ENST00000508407.5:ENST00000505500.5:ENST00000503507.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	71	2	1.90041	2.57795	3.25549	0.0145936	0.00363602	0.105992	0.0535085
chr17	36512022	36512089	6759408	0	-	0.61194	(0.57,1]	chr17	664532	2	INTRON	INTRON	MYO19	ENSG00000278259.5	ENST00000614623.5:ENST00000610992.4:ENST00000621550.4:ENST00000610930.4:ENST00000612097.1:ENST00000620413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	49	2	2.39221	2.577885	2.76356	0.00352602	5.18582e-4	0.0546236	0.0209322
chr17	82577853	82577953	6693193	0	+	0.54	(0.515,0.57]	chr17	654652	56	INTRON	INTRON	FOXK2	ENSG00000141568.21	ENST00000473637.6:ENST00000335255.10:ENST00000531030.5:ENST00000526383.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	149	2	2.41134	2.577865	2.74439	2.52651e-4	1.405e-4	0.0141489	0.0107792
chr7	121207023	121207123	3395839	0	+	0.25	[0,0.28]	chr7	317781	570	INTRON	INTRON	CPED1	ENSG00000106034.18	ENST00000310396.10:ENST00000450913.6:ENST00000423795.5:ENST00000466055.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	97	2	1.53147	2.5777900000000002	3.62411	0.0533898	0.00157815	0.179876	0.0362091
chr7	4687265	4687365	3269965	0	+	0.46	(0.44,0.476]	chr7	303884	40	INTRON	INTRON	FOXK1	ENSG00000164916.11	ENST00000328914.5	protein_coding	protein_coding	protein_coding	protein_coding	12	175	2	2.19056	2.5777400000000004	2.9649200000000002	0.00147358	3.28585e-5	0.0348596	0.00459178
chr11	66099467	66099567	4808161	0	+	0.53	(0.515,0.57]	chr11	447334	149	INTRON	INTRON	PACS1	ENSG00000175115.13	ENST00000320580.9:ENST00000527224.1:ENST00000533756.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	66	2	2.06758	2.5777349999999997	3.08789	0.0140038	4.83127e-4	0.0959618	0.0199261
chr14	101888495	101888594	5819785	0	+	0.444444	(0.44,0.476]	chr14	551895	46	INTRON	INTRON	PPP2R5C	ENSG00000078304.20	ENST00000694906.1:ENST00000422945.6:ENST00000328724.9:ENST00000350249.7:ENST00000557621.5:ENST00000334743.9:ENST00000445439.7:ENST00000557095.5:ENST00000554137.5:ENST00000556218.5:ENST00000557534.1:ENST00000557716.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	64	2	2.55649	2.577685	2.59888	0.00670547	0.00487719	0.0707084	0.0640618
chr16	29604431	29604531	6471645	0	-	0.28	[0,0.28]	chr16	625301	96	INTRON	INTRON	ENSG00000288632	ENSG00000288632.1	ENST00000675579.1	lncRNA	lncRNA	lncRNA	lncRNA	7	156	2	2.0524	2.57747	3.10254	0.0137657	2.3374e-4	0.0949306	0.0135358
chr1	246056567	246056667	676197	0	-	0.35	(0.32,0.35]	chr1	79717	31	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000391836.3:ENST00000464398.1:ENST00000453676.5:ENST00000462422.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	57	2	1.95271	2.577435	3.20216	0.0431213	0.00480708	0.162255	0.0602209
chr3	196054405	196054492	1897252	0	-	0.183908	[0,0.28]	chr3	189896	5	INTRON	INTRON	TFRC	ENSG00000072274.13	ENST00000426789.5:ENST00000420415.5:ENST00000360110.9:ENST00000392396.7:ENST00000463047.1:ENST00000475593.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	12	260	2	2.50637	2.5774150000000002	2.64846	0.00172097	1.90708e-4	0.0374701	0.01201
chr4	98896161	98896259	2208189	0	-	0.408163	(0.378,0.408]	chr4	216170	2	INTRON	INTRON	EIF4E	ENSG00000151247.13	ENST00000450253.7:ENST00000280892.10:ENST00000515638.5:ENST00000504432.5:ENST00000511644.5:ENST00000505992.1:ENST00000507665.5:ENST00000504472.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	14	197	2	2.34602	2.577335	2.80865	3.37643e-4	1.77021e-4	0.0170719	0.0116105
chr1	13785815	13785914	32022	0	+	0.464646	(0.44,0.476]	chr1	3883	26	INTRON	INTRON	PRDM2	ENSG00000116731.23	ENST00000311066.10:ENST00000376048.9:ENST00000235372.11:ENST00000491134.5:ENST00000413440.5:ENST00000343137.8:ENST00000503842.5:ENST00000505823.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	68	2	2.21079	2.57726	2.94373	0.0194581	0.00143431	0.119831	0.0340925
chr1	29048133	29048233	60305	0	+	0.24	[0,0.28]	chr1	7705	68	INTRON	INTRON	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000647918.1:ENST00000646800.1:ENST00000644342.1:ENST00000646189.1:ENST00000482464.6:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000646260.1:ENST00000373798.5:ENST00000644600.1:ENST00000649674.1:ENST00000643173.1:ENST00000343067.9:ENST00000644780.1:ENST00000650265.1:ENST00000648181.1:ENST00000643604.1:ENST00000648891.1:ENST00000373797.2:ENST00000349460.9:ENST00000645184.1:ENST00000645111.1:ENST00000643302.1:ENST00000645999.1:ENST00000642643.1:ENST00000636666.1:ENST00000644848.1:ENST00000644470.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	242	2	2.35896	2.5772500000000003	2.79554	0.00478185	8.5372e-5	0.0602209	0.00782
chr12	110296314	110296414	5226251	0	+	0.4	(0.378,0.408]	chr12	495242	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ATP2A2	ENSG00000174437.18	ENST00000552636.2:ENST00000308664.10:ENST00000539276.7:ENST00000377685.9:ENST00000548169.2:ENST00000550248.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	81	2	2.39444	2.577205	2.75997	0.0122858	7.19668e-4	0.091087	0.0244856
chr13	25317832	25317876	5457341	0	+	0.181818	[0,0.28]	chr13	522916	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	NUP58	ENSG00000139496.17	ENST00000481980.2:ENST00000490231.6:ENST00000695571.1:ENST00000477876.2:ENST00000695572.1:ENST00000463407.6:ENST00000695573.1:ENST00000381736.8:ENST00000695583.1:ENST00000466694.6:ENST00000381718.8:ENST00000695575.1:ENST00000695574.1:ENST00000495460.2:ENST00000381747.7:ENST00000695576.1:ENST00000394327.2:ENST00000695577.1:ENST00000695584.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	125	2	1.70667	2.577165	3.44766	0.0140108	0.00294011	0.102657	0.0483547
chr3	47679186	47679279	1684032	0	-	0.333333	(0.32,0.35]	chr3	172034	5	INTRON	INTRON	SMARCC1	ENSG00000173473.11	ENST00000254480.10:ENST00000425518.5:ENST00000462198.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	142	2	2.28621	2.57716	2.86811	0.0044232	1.82911e-4	0.0588897	0.01176
chr18	9207961	9208058	6869649	0	+	0.350515	(0.35,0.378]	chr18	680587	31	INTRON	INTRON	ANKRD12	ENSG00000101745.17	ENST00000262126.9:ENST00000540578.6:ENST00000581635.5:ENST00000400020.7:ENST00000581758.1:ENST00000546007.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	63	2	1.6122	2.5770299999999997	3.54186	0.0616849	8.14353e-4	0.174021	0.02604
chr16	21499282	21499381	6461346	0	-	0.50505	(0.476,0.515]	chr16	623371	113	INTRON	INTRON	SMG1P3	ENSG00000180747.15	ENST00000522480.5:ENST00000522841.6:ENST00000437413.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	6	73	2	1.44826	2.576895	3.70553	0.0482164	3.44823e-4	0.153146	0.0165103
chr6	34880476	34880576	3086259	0	-	0.37	(0.35,0.378]	chr6	288714	1	SS3_PROX	SS3_PROX:INTRON	TAF11	ENSG00000064995.19	ENST00000361288.9:ENST00000650109.1:ENST00000693593.1:ENST00000420584.3:ENST00000689560.1:ENST00000685682.1:ENST00000691871.1:ENST00000686190.1:ENST00000687970.1:ENST00000688059.1:ENST00000690161.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	71	2	1.9392	2.57688	3.21456	0.0126486	0.00420814	0.0982897	0.0572185
chr2	178608266	178608366	931823	0	+	0.4	(0.378,0.408]	chr2	102403	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	TTN-AS1	ENSG00000237298.10	ENST00000630096.2:ENST00000659121.1:ENST00000456053.5:ENST00000590773.6:ENST00000592600.6:ENST00000592630.5:ENST00000592750.5:ENST00000653807.1:ENST00000585451.5:ENST00000657023.1:ENST00000626117.2:ENST00000590807.5:ENST00000626954.2:ENST00000625480.2:ENST00000628826.2:ENST00000628296.2:ENST00000626138.2:ENST00000625536.2:ENST00000589907.5:ENST00000610290.4:ENST00000589234.5:ENST00000589830.1:ENST00000671355.1:ENST00000589487.5:ENST00000627527.1	lncRNA	lncRNA	lncRNA	lncRNA	2	38	2	2.36428	2.57687	2.78946	0.0441088	0.0158859	0.162255	0.101453
chr7	73686235	73686335	3331593	0	+	0.4	(0.378,0.408]	chr7	309874	2	SS3_PROX	SS3_PROX:INTRON	BUD23	ENSG00000071462.12	ENST00000464615.1:ENST00000421304.5:ENST00000432522.5:ENST00000421744.5:ENST00000265758.7:ENST00000496153.5:ENST00000478670.5:ENST00000441822.5:ENST00000436944.5:ENST00000428163.5:ENST00000463307.5:ENST00000423497.5:ENST00000430270.5:ENST00000487006.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	38	2	2.36428	2.57687	2.78946	0.0441088	0.0158859	0.162255	0.101453
chr8	38144942	38145035	3935971	0	-	0.387097	(0.378,0.408]	chr8	360586	7	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	STAR	ENSG00000147465.12	ENST00000276449.9:ENST00000520114.1:ENST00000522050.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	38	2	2.36428	2.57687	2.78946	0.0441088	0.0158859	0.162255	0.101453
chr4	1889480	1889580	1910751	0	+	0.48	(0.476,0.515]	chr4	191711	14	INTRON	INTRON	NSD2	ENSG00000109685.19	ENST00000508803.6:ENST00000507820.5:ENST00000508355.5:ENST00000514045.5:ENST00000515806.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	98	2	2.3472	2.576855	2.80651	0.00250121	0.00117711	0.0446195	0.031662
chr20	3999565	3999665	7309248	0	-	0.52	(0.515,0.57]	chr20	744300	248	INTRON	INTRON	RNF24	ENSG00000101236.17	ENST00000336095.10:ENST00000358395.11:ENST00000545616.2	protein_coding	protein_coding	protein_coding	protein_coding	6	75	2	2.16051	2.576835	2.99316	0.0046825	9.21623e-4	0.0631419	0.0278396
chr15	92912101	92912200	6103811	0	+	0.373737	(0.35,0.378]	chr15	581401	31	INTRON	INTRON	ENSG00000279765:CHD2	ENSG00000279765.3:ENSG00000173575.22	ENST00000629685.2:ENST00000630790.1:ENST00000626874.2:ENST00000394196.9:ENST00000635856.1:ENST00000420239.7:ENST00000628375.2:ENST00000625990.3:ENST00000626782.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	12	116	2	1.257	2.576765	3.89653	0.033801200000000003	2.61932e-4	0.146709	0.0149313
chr4	468381	468481	2092863	0	-	0.43	(0.408,0.44]	chr4	206783	236	INTRON	INTRON	ABCA11P:ZNF721	ENSG00000251595.7:ENSG00000182903.16	ENST00000451020.6:ENST00000514396.5:ENST00000507854.1:ENST00000515578.5:ENST00000506646.5:ENST00000507078.1:ENST00000511833.3:ENST00000338977.5:ENST00000505900.1	protein_coding	protein_coding	protein_coding:transcribed_processed_pseudogene	protein_coding:nonsense_mediated_decay:processed_transcript	14	207	2	2.35418	2.576735	2.79929	2.94324e-4	9.03312e-5	0.0153414	0.00846003
chr5	181313228	181313328	2563731	0	+	0.37	(0.35,0.378]	chr5	245352	62	INTRON	INTRON	ENSG00000238035	ENSG00000238035.8	ENST00000499986.8	lncRNA	lncRNA	lncRNA	lncRNA	5	84	2	2.52395	2.576725	2.6295	0.00824736	0.00142732	0.0773378	0.0347139
chr1	45678788	45678888	440510	0	-	0.37	(0.35,0.378]	chr1	53361	172	INTRON	INTRON	GPBP1L1	ENSG00000159592.11	ENST00000290795.7:ENST00000355105.8:ENST00000488278.5:ENST00000480941.1:ENST00000480083.5:ENST00000493083.5:ENST00000460859.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	39	2	2.1617	2.576715	2.99173	0.0771502	0.00713365	0.196285	0.0756118
chr4	55469920	55470018	2149129	0	-	0.367347	(0.35,0.378]	chr4	211494	58	INTRON	INTRON	CLOCK	ENSG00000134852.15	ENST00000513440.6:ENST00000309964.8:ENST00000381322.5:ENST00000506747.5:ENST00000435527.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	39	2	2.1617	2.576715	2.99173	0.0771502	0.00713365	0.196285	0.0756118
chrX	48463770	48463867	7815395	0	-	0.28866000000000003	(0.28,0.32]	chrX	796682	4	INTRON	INTRON	SLC38A5	ENSG00000017483.16	ENST00000595796.5:ENST00000619100.4:ENST00000620913.5:ENST00000497336.1:ENST00000494034.5:ENST00000440085.5:ENST00000441948.5:ENST00000413668.5:ENST00000416711.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	82	2	2.55521	2.57669	2.59817	0.00753816	0.0067419	0.0748659	0.0739405
chr2	173950180	173950280	1268919	0	-	0.37	(0.35,0.378]	chr2	134213	154	INTRON	INTRON	SP3	ENSG00000172845.18	ENST00000650743.1:ENST00000310015.12:ENST00000416195.1:ENST00000418194.7:ENST00000652005.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	62	2	2.02424	2.576645	3.12905	0.0164934	0.00566312	0.110301	0.0653997
chr1	100406022	100406122	173165	0	+	0.38	(0.378,0.408]	chr1	18824	148	INTRON	INTRON	CDC14A	ENSG00000079335.20	ENST00000646665.1:ENST00000644844.1:ENST00000635056.2:ENST00000647005.1:ENST00000647203.1:ENST00000644676.1:ENST00000361544.11:ENST00000370124.8:ENST00000336454.5:ENST00000644813.1:ENST00000455467.6:ENST00000646563.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	80	2	2.35168	2.5766150000000003	2.80155	0.0046563	0.00278307	0.0629753	0.0469265
chr12	69244374	69244474	5163545	0	+	0.47	(0.44,0.476]	chr12	488988	43	INTRON	INTRON	CPSF6	ENSG00000111605.18	ENST00000435070.7:ENST00000550075.5:ENST00000650046.1:ENST00000456847.7:ENST00000266679.8:ENST00000550987.5:ENST00000551516.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	89	2	2.00793	2.576525	3.14512	0.00937685	5.78837e-4	0.0859966	0.0223209
chr12	50155216	50155315	5323054	0	-	0.323232	(0.32,0.35]	chr12	507529	5	INTRON	INTRON	CERS5	ENSG00000139624.14	ENST00000317551.12:ENST00000422340.6:ENST00000551697.5:ENST00000380189.8:ENST00000547787.5:ENST00000438450.6:ENST00000542320.5:ENST00000547800.2:ENST00000549389.5:ENST00000550258.5:ENST00000547455.5:ENST00000546514.1:ENST00000549942.1:ENST00000550899.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	55	2	2.35591	2.57649	2.79707	0.0170923	0.0128129	0.104099	0.0990564
chr17	63759429	63759528	6811835	0	-	0.333333	(0.32,0.35]	chr17	673166	25	INTRON	INTRON	CCDC47	ENSG00000108588.15	ENST00000225726.10:ENST00000403162.7:ENST00000582252.1:ENST00000582331.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	55	2	2.35591	2.57649	2.79707	0.0170923	0.0128129	0.104099	0.0990564
chr1	246452468	246452568	680174	0	-	0.33	(0.32,0.35]	chr1	79777	352	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000490107.6:ENST00000462422.5:ENST00000403792.7:ENST00000470863.1:ENST00000455277.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	55	2	2.30476	2.57644	2.84812	0.0151817	0.0147575	0.108535	0.0983813
chr13	50203222	50203322	5492196	0	+	0.33	(0.32,0.35]	chr13	526049	168	INTRON	INTRON	DLEU1	ENSG00000176124.15	ENST00000467721.5:ENST00000468522.5:ENST00000490577.5:ENST00000491341.5:ENST00000491615.5:ENST00000463474.7:ENST00000468168.5:ENST00000476738.5:ENST00000461527.7:ENST00000486895.5:ENST00000485007.5:ENST00000475913.5:ENST00000484529.5	lncRNA	lncRNA	lncRNA	lncRNA	3	55	2	2.30476	2.57644	2.84812	0.0151817	0.0147575	0.108535	0.0983813
chr1	28421344	28421444	56351	0	+	0.39	(0.378,0.408]	chr1	7273	135	INTRON	INTRON	PHACTR4	ENSG00000204138.13	ENST00000633371.1:ENST00000632202.1:ENST00000632421.1:ENST00000463428.5:ENST00000373839.8:ENST00000493669.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	37	2	2.2259	2.576275	2.92665	0.0662381	0.0086017	0.181924	0.083729
chr1	223800547	223800599	642907	0	-	0.384615	(0.378,0.408]	chr1	75902	1	SS5_PROX	SS5_PROX:INTRON	TP53BP2	ENSG00000143514.17	ENST00000343537.12:ENST00000391878.6:ENST00000483398.5:ENST00000498843.5:ENST00000494100.1:ENST00000464656.1:ENST00000489310.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	37	2	2.2259	2.576275	2.92665	0.0662381	0.0086017	0.181924	0.083729
chr16	31190569	31190655	6340675	0	+	0.406977	(0.378,0.408]	chr16	608358	3	EXON_MRNA	EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	FUS	ENSG00000089280.19	ENST00000566605.5:ENST00000254108.12:ENST00000380244.7:ENST00000487509.6:ENST00000568685.1:ENST00000474990.5:ENST00000569760.5:ENST00000483853.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	37	2	2.2259	2.576275	2.92665	0.0662381	0.0086017	0.181924	0.083729
chr5	37519889	37519989	2341802	0	+	0.4	(0.378,0.408]	chr5	226254	29	INTRON	INTRON	WDR70	ENSG00000082068.9	ENST00000504564.1:ENST00000511906.5:ENST00000265107.9:ENST00000510699.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	37	2	2.2259	2.576275	2.92665	0.0662381	0.0086017	0.181924	0.083729
chr5	78281384	78281484	2651014	0	-	0.38	(0.378,0.408]	chr5	251795	85	INTRON	INTRON	AP3B1	ENSG00000132842.15	ENST00000519295.6:ENST00000255194.11:ENST00000695515.1:ENST00000695454.1:ENST00000695511.1:ENST00000695453.1:ENST00000695455.1:ENST00000695513.1:ENST00000695488.1:ENST00000695450.1:ENST00000695507.1:ENST00000695512.1:ENST00000695510.1:ENST00000695451.1:ENST00000695447.1:ENST00000695505.1:ENST00000519888.6:ENST00000695514.1:ENST00000517940.2:ENST00000517561.2:ENST00000695452.1:ENST00000695449.1:ENST00000695540.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	37	2	2.2259	2.576275	2.92665	0.0662381	0.0086017	0.181924	0.083729
chr5	119075227	119075326	2459803	0	+	0.40404	(0.378,0.408]	chr5	235574	32	INTRON	INTRON	DMXL1	ENSG00000172869.15	ENST00000509902.5:ENST00000539542.6:ENST00000503802.5:ENST00000311085.8:ENST00000510924.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	37	2	2.2259	2.576275	2.92665	0.0662381	0.0086017	0.181924	0.083729
chr9	130701474	130701558	4213790	0	+	0.404762	(0.378,0.408]	chr9	386405	5	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	EXOSC2	ENSG00000130713.17	ENST00000491115.7:ENST00000686102.1:ENST00000691284.1:ENST00000685137.1:ENST00000495699.3:ENST00000688967.1:ENST00000691104.1:ENST00000691926.1:ENST00000693435.1:ENST00000688258.1:ENST00000372358.10:ENST00000546165.6:ENST00000372352.7:ENST00000687420.1:ENST00000693011.1:ENST00000687051.1:ENST00000691425.1:ENST00000693610.1:ENST00000692794.1:ENST00000689890.1:ENST00000688350.1:ENST00000372351.7:ENST00000372350.7:ENST00000685277.1:ENST00000688364.1:ENST00000689662.1:ENST00000430138.7:ENST00000467138.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	37	2	2.2259	2.576275	2.92665	0.0662381	0.0086017	0.181924	0.083729
chr1	45586476	45586575	93222	0	+	0.59596	(0.57,1]	chr1	12558	19	INTRON	INTRON	NASP	ENSG00000132780.17	ENST00000437901.6:ENST00000537798.5:ENST00000437362.6:ENST00000350030.8:ENST00000464190.6:ENST00000527359.5:ENST00000528084.5:ENST00000453748.5:ENST00000525515.5:ENST00000527470.5:ENST00000529333.5:ENST00000531532.5:ENST00000530840.5:ENST00000528238.5:ENST00000534101.1:ENST00000470768.5:ENST00000372052.8:ENST00000351223.7:ENST00000629893.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	51	2	2.52405	2.5762650000000002	2.62848	0.0263139	1.62533e-4	0.133676	0.0116628
chr18	51050994	51051092	6901834	0	+	0.316327	(0.28,0.32]	chr18	683862	13	INTRON	INTRON	SMAD4	ENSG00000141646.15	ENST00000398417.6:ENST00000342988.8:ENST00000592911.5:ENST00000611848.2:ENST00000588745.5:ENST00000592186.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	72	2	2.1076	2.576225	3.04485	0.0133585	0.00894006	0.100772	0.0799922
chr9	133271862	133271962	4369998	0	-	0.32	(0.28,0.32]	chr9	402068	93	INTRON	INTRON	ABO	ENSG00000175164.16	ENST00000679909.1:ENST00000453660.4:ENST00000647353.1:ENST00000611156.4:ENST00000538324.2:ENST00000651471.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	151	2	2.26355	2.576215	2.88888	0.00229405	8.6776e-4	0.0439319	0.0269488
chr17	31130006	31130105	6591484	0	+	0.343434	(0.32,0.35]	chr17	641057	11	INTRON	INTRON	NF1	ENSG00000196712.20	ENST00000696138.1:ENST00000356175.7:ENST00000487476.5:ENST00000691014.1:ENST00000358273.9:ENST00000431387.8:ENST00000579081.5:ENST00000489712.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	41	2	2.30673	2.5762099999999997	2.84569	0.0584434	0.0121137	0.167723	0.0962599
chr7	111230005	111230105	3620782	0	-	0.35	(0.32,0.35]	chr7	337093	2661	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	41	2	2.30673	2.5762099999999997	2.84569	0.0584434	0.0121137	0.167723	0.0962599
chr15	66602327	66602426	6050984	0	+	0.484848	(0.476,0.515]	chr15	576221	197	INTRON	INTRON	LINC01169	ENSG00000259471.1	ENST00000558797.1	lncRNA	lncRNA	lncRNA	lncRNA	10	139	2	2.09985	2.576095	3.05234	0.00221385	1.48283e-4	0.0419348	0.0105822
chr17	31958162	31958262	6595889	0	+	0.55	(0.515,0.57]	chr17	641554	101	INTRON	INTRON	SUZ12	ENSG00000178691.11	ENST00000322652.10:ENST00000580398.1	protein_coding	protein_coding	protein_coding	protein_coding	4	49	2	2.06206	2.57604	3.09002	0.0135396	0.00491099	0.101363	0.0609494
chr8	37869426	37869524	3935638	0	-	0.540816	(0.515,0.57]	chr8	360553	60	INTRON	INTRON	RAB11FIP1	ENSG00000156675.16	ENST00000330843.9:ENST00000287263.8:ENST00000522727.5:ENST00000523182.5:ENST00000522774.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	90	2	2.19642	2.57604	2.95566	0.00442355	2.10815e-4	0.0588897	0.0126882
chr1	21730428	21730524	396327	0	-	0.364583	(0.35,0.378]	chr1	47293	2	INTRON	INTRON	USP48	ENSG00000090686.16	ENST00000400301.5:ENST00000308271.14:ENST00000529637.5:ENST00000526044.5:ENST00000534705.5:ENST00000421625.6:ENST00000374730.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	39	2	2.48657	2.5760199999999998	2.66547	0.032907	0.0233639	0.145164	0.118323
chr1	35405668	35405768	69694	0	+	0.37	(0.35,0.378]	chr1	8855	2	SS5_PROX	SS5_PROX:INTRON	ZMYM4	ENSG00000146463.12	ENST00000314607.11:ENST00000457946.1:ENST00000492456.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	39	2	2.48657	2.5760199999999998	2.66547	0.032907	0.0233639	0.145164	0.118323
chr1	42246340	42246440	431542	0	-	0.37	(0.35,0.378]	chr1	52311	180	INTRON	INTRON	FOXJ3	ENSG00000198815.9	ENST00000372573.5:ENST00000372572.5:ENST00000361776.5:ENST00000545068.5:ENST00000361346.6:ENST00000445886.5	protein_coding	protein_coding	protein_coding	protein_coding	2	39	2	2.48657	2.5760199999999998	2.66547	0.032907	0.0233639	0.145164	0.118323
chr16	85450410	85450510	6414334	0	+	0.37	(0.35,0.378]	chr16	615465	911	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	2	39	2	2.48657	2.5760199999999998	2.66547	0.032907	0.0233639	0.145164	0.118323
chr2	157302127	157302221	896970	0	+	0.351064	(0.35,0.378]	chr2	99314	1	EXON_LNCRNA	EXON_LNCRNA:INTRON	GALNT5	ENSG00000136542.9	ENST00000259056.5:ENST00000463418.5:ENST00000461704.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	39	2	2.48657	2.5760199999999998	2.66547	0.032907	0.0233639	0.145164	0.118323
chr11	68465019	68465119	4817375	0	+	0.52	(0.515,0.57]	chr11	448907	38	INTRON	INTRON	PPP6R3	ENSG00000110075.15	ENST00000530427.5:ENST00000528635.5:ENST00000529907.5:ENST00000533127.5:ENST00000534534.5:ENST00000529344.5:ENST00000524845.5:ENST00000393800.7:ENST00000265637.8:ENST00000524904.5:ENST00000393801.7:ENST00000265636.9:ENST00000529710.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	49	2	2.00468	2.57599	3.1473	0.0166344	0.00397184	0.110511	0.0549214
chr18	3252117	3252217	6866480	0	+	0.34	(0.32,0.35]	chr18	680238	20	INTRON	INTRON	MYL12A	ENSG00000101608.13	ENST00000579226.5:ENST00000217652.8:ENST00000580353.1:ENST00000578611.5:ENST00000583449.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	41	2	2.51061	2.5759499999999997	2.64129	0.0364463	0.0222819	0.138959	0.124303
chr2	26048079	26048179	713239	0	+	0.35	(0.32,0.35]	chr2	82440	54	INTRON	INTRON	RAB10	ENSG00000084733.11	ENST00000264710.5:ENST00000495146.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	41	2	2.51061	2.5759499999999997	2.64129	0.0364463	0.0222819	0.138959	0.124303
chr15	57979021	57979121	6186659	0	-	0.54	(0.515,0.57]	chr15	589736	128	INTRON	INTRON	ALDH1A2	ENSG00000128918.15	ENST00000537372.5:ENST00000249750.9:ENST00000347587.7:ENST00000430119.6:ENST00000558231.5:ENST00000559517.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	42	2	1.94945	2.575925	3.2024	0.0414068	0.00322022	0.161557	0.0507087
chr20	53568530	53568628	7358225	0	-	0.530612	(0.515,0.57]	chr20	750276	16	UTR3	UTR3:EXON_MRNA	ZNF217	ENSG00000171940.14	ENST00000371471.7:ENST00000302342.3	protein_coding	protein_coding	protein_coding	protein_coding	3	42	2	1.94945	2.575925	3.2024	0.0414068	0.00322022	0.161557	0.0507087
chr6	15297231	15297331	2823458	0	+	0.55	(0.515,0.57]	chr6	265190	479	INTRON	INTRON	JARID2	ENSG00000008083.14	ENST00000341776.7:ENST00000397311.4	protein_coding	protein_coding	protein_coding	protein_coding	6	67	2	1.96006	2.57592	3.19178	0.00725161	0.00289534	0.072984	0.0494641
chr17	59839082	59839179	6643725	0	+	0.494845	(0.476,0.515]	chr17	648784	8	EXON_MRNA	EXON_MRNA:INTRON	VMP1	ENSG00000062716.13	ENST00000262291.9:ENST00000592619.5:ENST00000591877.1:ENST00000591782.1:ENST00000588617.1:ENST00000592790.1:ENST00000587470.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	16	232	2	2.10727	2.57582	3.04437	0.00125166	5.18971e-6	0.0323608	0.00156347
chr5	127006134	127006234	2714314	0	-	0.43	(0.408,0.44]	chr5	255278	594	INTRON	INTRON	MARCHF3	ENSG00000173926.6	ENST00000308660.6:ENST00000502289.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	14	176	2	1.56655	2.57578	3.58501	0.00914096	1.16484e-5	0.0855292	0.00270022
chr1	173936538	173936637	587161	0	-	0.393939	(0.378,0.408]	chr1	70649	56	UTR3	UTR3:EXON_MRNA	RC3H1	ENSG00000135870.12	ENST00000367696.7:ENST00000258349.8	protein_coding	protein_coding	protein_coding	protein_coding	2	37	2	2.54849	2.5757250000000003	2.60296	0.0273196	0.0267851	0.136494	0.123349
chr1	245943668	245943768	675065	0	-	0.38	(0.378,0.408]	chr1	79699	130	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000366517.5:ENST00000490107.6:ENST00000493441.5:ENST00000488153.5:ENST00000492487.5:ENST00000391836.3:ENST00000464398.1:ENST00000453676.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	37	2	2.54849	2.5757250000000003	2.60296	0.0273196	0.0267851	0.136494	0.123349
chr16	15867916	15868016	6451743	0	-	0.4	(0.378,0.408]	chr16	621906	4	SS3_PROX	SS3_PROX:INTRON	CEP20	ENSG00000133393.13	ENST00000255759.11:ENST00000573968.5:ENST00000573087.5:ENST00000573396.5:ENST00000575744.5:ENST00000572415.5:ENST00000575073.5:ENST00000573429.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	37	2	2.54849	2.5757250000000003	2.60296	0.0273196	0.0267851	0.136494	0.123349
chrX	118431283	118431383	7707971	0	+	0.38	(0.378,0.408]	chrX	788600	200	INTRON	INTRON	WDR44	ENSG00000131725.14	ENST00000371822.9:ENST00000254029.8:ENST00000371825.7:ENST00000371848.3	protein_coding	protein_coding	protein_coding	protein_coding	2	37	2	2.54849	2.5757250000000003	2.60296	0.0273196	0.0267851	0.136494	0.123349
chr10	3777077	3777176	4543115	0	-	0.353535	(0.35,0.378]	chr10	419496	12	UTR3	UTR3:EXON_MRNA:INTRON	KLF6	ENSG00000067082.15	ENST00000497571.6:ENST00000461124.1:ENST00000542957.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	116	2	2.00273	2.5757149999999998	3.1487	0.00416915	6.87038e-4	0.0591344	0.024008
chr1	153891395	153891494	557450	0	-	0.494949	(0.476,0.515]	chr1	65989	45	INTRON	INTRON	GATAD2B	ENSG00000143614.10	ENST00000368655.5:ENST00000634544.1:ENST00000634408.1:ENST00000634401.1:ENST00000634791.1:ENST00000636014.1:ENST00000637331.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	57	2	2.20789	2.5756949999999996	2.9435	0.00929849	0.00820497	0.0817766	0.081115
chr2	235513033	235513133	1041525	0	+	0.42	(0.408,0.44]	chr2	111217	178	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	95	2	2.42808	2.5756550000000002	2.72323	0.00331055	0.00114246	0.0527031	0.0307966
chr11	67192956	67193056	4813190	0	+	0.36	(0.35,0.378]	chr11	448134	107	INTRON	INTRON	KDM2A	ENSG00000173120.15	ENST00000529006.7:ENST00000398645.6:ENST00000308783.9	protein_coding	protein_coding	protein_coding	protein_coding	6	79	2	1.63783	2.575655	3.51348	0.0250627	0.00136294	0.133086	0.0336321
chr18	13052031	13052128	6877196	0	+	0.57732000000000006	(0.57,1]	chr18	681436	18	INTRON	INTRON	CEP192	ENSG00000101639.19	ENST00000325971.12:ENST00000506447.5:ENST00000589596.5:ENST00000513432.5:ENST00000511820.6:ENST00000510237.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	35	2	2.13445	2.5755850000000002	3.01672	0.0241482	5.94133e-4	0.12011	0.0221865
chr6	4914128	4914228	2792242	0	+	0.39	(0.378,0.408]	chr6	263614	214	INTRON	INTRON	CDYL	ENSG00000153046.18	ENST00000328908.9:ENST00000440139.5:ENST00000397588.8:ENST00000472453.5:ENST00000449732.6:ENST00000343762.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	93	2	1.67942	2.575535	3.47165	0.0336706	7.48917e-5	0.134145	0.00724515
chr19	55403260	55403360	7214037	0	-	0.4	(0.378,0.408]	chr19	732854	11	INTRON	INTRON	UBE2S	ENSG00000108106.14	ENST00000264552.14:ENST00000587845.5:ENST00000589978.1	protein_coding	protein_coding	protein_coding	protein_coding	6	96	2	2.48281	2.575515	2.66822	0.00340454	0.00112898	0.0517761	0.0308465
chr4	109501439	109501538	2019252	0	+	0.363636	(0.35,0.378]	chr4	200784	62	INTRON	INTRON	SEC24B	ENSG00000138802.11	ENST00000504968.6:ENST00000399100.6:ENST00000265175.5	protein_coding	protein_coding	protein_coding	protein_coding	3	52	2	2.04224	2.5754349999999997	3.10863	0.0363073	0.00470896	0.138959	0.0631419
chr9	130859675	130859774	4215323	0	+	0.434343	(0.408,0.44]	chr9	386442	42	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000318560.6	protein_coding	protein_coding	protein_coding	protein_coding	6	88	2	2.32619	2.5754	2.82461	0.00241819	0.00239266	0.0450826	0.0442901
chr7	152328005	152328105	3680209	0	-	0.45	(0.44,0.476]	chr7	341641	123	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000684262.1:ENST00000682301.1:ENST00000452749.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	57	2	2.1762	2.575355	2.97451	0.0092251	0.00853825	0.0855292	0.0780043
chr10	35389622	35389722	4425034	0	+	0.56	(0.515,0.57]	chr10	407899	521	INTRON	INTRON	CCNY	ENSG00000108100.18	ENST00000374706.5:ENST00000490012.6:ENST00000493157.6:ENST00000374704.8:ENST00000265375.13:ENST00000339497.7:ENST00000492478.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	31	2	2.23915	2.575275	2.9114	0.0596178	0.00826019	0.16883600000000001	0.0813266
chr16	12165719	12165819	6293222	0	+	0.54	(0.515,0.57]	chr16	602439	301	INTRON	INTRON	SNX29	ENSG00000048471.14	ENST00000566228.6:ENST00000564791.5	protein_coding	protein_coding	protein_coding	protein_coding	2	31	2	2.23915	2.575275	2.9114	0.0596178	0.00826019	0.16883600000000001	0.0813266
chrX	121243914	121244014	7715629	0	+	0.55	(0.515,0.57]	chrX	789390	577	INTRON	INTRON	ENSG00000286163	ENSG00000286163.1	ENST00000651788.1	lncRNA	lncRNA	lncRNA	lncRNA	2	31	2	2.23915	2.575275	2.9114	0.0596178	0.00826019	0.16883600000000001	0.0813266
chr20	47589456	47589555	7281873	0	+	0.494949	(0.476,0.515]	chr20	740475	58	INTRON	INTRON	NCOA3	ENSG00000124151.19	ENST00000371998.8:ENST00000372004.7:ENST00000371997.3	protein_coding	protein_coding	protein_coding	protein_coding	2	36	2	2.13854	2.575255	3.01197	0.0776563	0.00633162	0.196285	0.0722266
chr19	2165761	2165861	6996187	0	+	0.54	(0.515,0.57]	chr19	693417	11	INTRON	INTRON	DOT1L	ENSG00000104885.19	ENST00000398665.8:ENST00000686010.1:ENST00000452696.5:ENST00000478937.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	95	2	2.41022	2.5752100000000002	2.7402	0.00332441	3.10265e-4	0.0528673	0.0162055
chr15	64640183	64640283	6045887	0	+	0.39	(0.378,0.408]	chr15	575702	168	INTRON	INTRON	ZNF609	ENSG00000180357.10	ENST00000326648.5:ENST00000558680.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	68	2	1.71374	2.575095	3.43645	0.0274158	0.00171162	0.136498	0.037419
chr7	5419761	5419860	3472043	0	-	0.565657	(0.515,0.57]	chr7	324678	125	INTRON	INTRON	TNRC18	ENSG00000182095.15	ENST00000399537.8:ENST00000430969.6:ENST00000399434.2	protein_coding	protein_coding	protein_coding	protein_coding	7	96	2	2.36534	2.575075	2.78481	0.00404547	2.42617e-4	0.0578376	0.0143397
chr6	35914267	35914367	3088758	0	-	0.27	[0,0.28]	chr6	288898	89	INTRON	INTRON	SRPK1	ENSG00000096063.16	ENST00000373825.7:ENST00000423325.6:ENST00000346162.10:ENST00000361690.7:ENST00000510290.5:ENST00000508473.5:ENST00000512445.5:ENST00000513367.1:ENST00000507909.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	69	2	2.09899	2.5750650000000004	3.05114	0.0371453	0.0075493	0.139304	0.0773151
chr9	91882357	91882457	4284586	0	-	0.46	(0.44,0.476]	chr9	393909	1062	INTRON	INTRON	ROR2	ENSG00000169071.15	ENST00000375715.5:ENST00000375708.4:ENST00000550066.5:ENST00000495386.5:ENST00000546883.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	58	2	1.94723	2.575065	3.2029	0.0227424	0.00308681	0.117618	0.0510391
chr17	59044491	59044590	6801290	0	-	0.454545	(0.44,0.476]	chr17	671719	22	INTRON	INTRON	TRIM37	ENSG00000108395.14	ENST00000393066.7:ENST00000577554.5:ENST00000262294.12:ENST00000393065.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	48	2	1.83899	2.5750450000000003	3.3111	0.0589734	0.0020006	0.167915	0.0412555
chr16	2177351	2177448	6277618	0	+	0.515464	(0.515,0.57]	chr16	600237	9	UTR3	UTR3:EXON_MRNA	TRAF7	ENSG00000131653.13	ENST00000326181.11	protein_coding	protein_coding	protein_coding	protein_coding	5	57	2	1.43029	2.574855	3.71942	0.0645632	2.61221e-4	0.179192	0.014326
chr22	39318217	39318308	7589793	0	-	0.384615	(0.378,0.408]	chr22	777099	5	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	RPL3	ENSG00000100316.16	ENST00000216146.9:ENST00000401609.5:ENST00000465618.5:ENST00000402527.5:ENST00000453303.5:ENST00000427905.5:ENST00000420536.1:ENST00000484615.5:ENST00000460589.5:ENST00000461967.1:ENST00000498462.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	100	2	1.81931	2.574785	3.33026	0.00835783	0.00189824	0.0774402	0.0402736
chr17	57996938	57997038	6799946	0	-	0.36	(0.35,0.378]	chr17	671423	22	INTRON	INTRON	ENSG00000266086	ENSG00000266086.3	ENST00000578794.2:ENST00000665125.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	5	71	2	1.97697	2.574705	3.17244	0.0109711	0.00487788	0.092635	0.0607461
chr8	47832523	47832621	3944415	0	-	0.367347	(0.35,0.378]	chr8	361659	2	INTRON	INTRON	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7	protein_coding	protein_coding	protein_coding	protein_coding	5	71	2	1.97697	2.574705	3.17244	0.0109711	0.00487788	0.092635	0.0607461
chr15	29747061	29747161	6124655	0	-	0.47	(0.44,0.476]	chr15	583536	39	INTRON	INTRON	TJP1	ENSG00000104067.17	ENST00000346128.10:ENST00000614355.5:ENST00000400011.6:ENST00000356107.11:ENST00000677774.1:ENST00000545208.6	protein_coding	protein_coding	protein_coding	protein_coding	3	48	2	2.19078	2.5746900000000004	2.9586	0.0226089	0.00758318	0.117489	0.0773151
chr17	75206094	75206194	6674259	0	+	0.46	(0.44,0.476]	chr17	651336	3	SS5_PROX	SS5_PROX:INTRON	NUP85	ENSG00000125450.11	ENST00000583569.5:ENST00000245544.9:ENST00000583948.5:ENST00000579324.5:ENST00000582833.5:ENST00000449421.6:ENST00000581104.5:ENST00000579298.5:ENST00000583548.1:ENST00000577208.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	48	2	2.19078	2.5746900000000004	2.9586	0.0226089	0.00758318	0.117489	0.0773151
chr21	46260029	46260116	7471156	0	-	0.45977	(0.44,0.476]	chr21	761633	6	INTRON	INTRON	MCM3AP	ENSG00000160294.11	ENST00000397708.1:ENST00000291688.6:ENST00000486937.5:ENST00000496607.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	48	2	2.19078	2.5746900000000004	2.9586	0.0226089	0.00758318	0.117489	0.0773151
chr3	14436366	14436466	1369732	0	+	0.45	(0.44,0.476]	chr3	144322	32	INTRON	INTRON	SLC6A6	ENSG00000131389.18	ENST00000613060.4:ENST00000618278.4:ENST00000610642.4:ENST00000649500.1:ENST00000622186.5:ENST00000621751.4:ENST00000613930.4:ENST00000622176.4:ENST00000615188.1:ENST00000452775.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	48	2	2.19078	2.5746900000000004	2.9586	0.0226089	0.00758318	0.117489	0.0773151
chr2	149587517	149587602	1242978	0	-	0.517647	(0.515,0.57]	chr2	131937	6	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MMADHC	ENSG00000168288.13	ENST00000303319.10:ENST00000428879.5:ENST00000422782.2:ENST00000460311.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	31	2	2.46104	2.574685	2.68833	0.032841	0.0184931	0.145164	0.108861
chr5	177290498	177290595	2555296	0	+	0.515464	(0.515,0.57]	chr5	244061	12	INTRON	INTRON	NSD1	ENSG00000165671.22	ENST00000354179.9:ENST00000686993.1:ENST00000439151.7:ENST00000689345.1:ENST00000347982.9:ENST00000687453.1:ENST00000685206.1:ENST00000688613.1:ENST00000508029.6:ENST00000503056.6:ENST00000513736.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	31	2	2.46104	2.574685	2.68833	0.032841	0.0184931	0.145164	0.108861
chr19	7542264	7542362	7009392	0	+	0.428571	(0.408,0.44]	chr19	695737	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PNPLA6	ENSG00000032444.17	ENST00000221249.10:ENST00000545201.6:ENST00000450331.7:ENST00000414982.7:ENST00000600737.6:ENST00000595264.5:ENST00000599311.5:ENST00000595176.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	48	2	2.00228	2.5746700000000002	3.14706	0.0389732	0.00382411	0.143072	0.0562562
chr8	67210083	67210183	3962447	0	-	0.43	(0.408,0.44]	chr8	363563	30	INTRON	INTRON	ARFGEF1	ENSG00000066777.9	ENST00000520381.5:ENST00000518789.5:ENST00000262215.8:ENST00000518230.5	protein_coding	protein_coding	protein_coding	protein_coding	3	48	2	2.00228	2.5746700000000002	3.14706	0.0389732	0.00382411	0.143072	0.0562562
chr3	177090455	177090552	1871366	0	-	0.443299	(0.44,0.476]	chr3	187386	31	INTRON	INTRON	TBL1XR1	ENSG00000177565.18	ENST00000457928.7:ENST00000430069.5:ENST00000673974.1:ENST00000631253.2:ENST00000352800.10:ENST00000422442.6:ENST00000428970.5:ENST00000424913.5:ENST00000437738.5:ENST00000431421.5:ENST00000635794.1:ENST00000630796.2:ENST00000450267.5:ENST00000630833.2:ENST00000431674.5:ENST00000422066.5:ENST00000443315.5:ENST00000627825.2:ENST00000427349.5:ENST00000413084.5:ENST00000637137.1:ENST00000491623.2:ENST00000637544.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	85	2	1.53197	2.574575	3.61718	0.0211313	7.37432e-4	0.122929	0.02495
chr4	38690075	38690172	1948850	0	+	0.319588	(0.28,0.32]	chr4	195088	3	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	KLF3	ENSG00000109787.13	ENST00000514033.1:ENST00000261438.10	protein_coding	protein_coding	protein_coding	protein_coding	4	72	2	1.98806	2.574535	3.16101	0.0199553	0.0061861	0.120668	0.0677395
chr7	50792341	50792441	3532678	0	-	0.38	(0.378,0.408]	chr7	329549	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	GRB10	ENSG00000106070.20	ENST00000335866.7:ENST00000644769.1:ENST00000644879.1:ENST00000402497.6:ENST00000645075.2:ENST00000439044.7:ENST00000644716.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	59	2	2.09402	2.5745199999999997	3.05502	0.0126438	0.00689519	0.0982897	0.0717484
chr12	120860127	120860227	5435465	0	-	0.51	(0.476,0.515]	chr12	519663	246	INTRON	INTRON	SPPL3	ENSG00000157837.16	ENST00000353487.7:ENST00000536996.5:ENST00000543608.5:ENST00000543854.5	protein_coding	protein_coding	protein_coding	protein_coding	2	36	2	2.38442	2.57451	2.7646	0.0417472	0.0162075	0.161736	0.101453
chr3	138258851	138258950	1514682	0	+	0.484848	(0.476,0.515]	chr3	158357	121	INTRON	INTRON	ARMC8	ENSG00000114098.18	ENST00000538260.5:ENST00000481646.5:ENST00000469044.6:ENST00000491704.5:ENST00000461822.5:ENST00000485396.5:ENST00000463485.5:ENST00000460495.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	36	2	2.38442	2.57451	2.7646	0.0417472	0.0162075	0.161736	0.101453
chr9	97635411	97635510	4172620	0	+	0.515152	(0.476,0.515]	chr9	380133	11	INTRON	INTRON	NCBP1	ENSG00000136937.13	ENST00000478100.3:ENST00000375147.8:ENST00000629069.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	36	2	2.38442	2.57451	2.7646	0.0417472	0.0162075	0.161736	0.101453
chr7	128603217	128603317	3408081	0	+	0.37	(0.35,0.378]	chr7	318364	108	INTRON	INTRON	ENSG00000280828:ENSG00000242588	ENSG00000280828.1:ENSG00000242588.6	ENST00000479267.2:ENST00000605862.5	lncRNA	lncRNA	lncRNA:unprocessed_pseudogene	lncRNA:unprocessed_pseudogene	4	62	2	1.97646	2.57445	3.17244	0.0193942	0.00487788	0.119831	0.0607461
chr22	19949367	19949465	7477477	0	+	0.336735	(0.32,0.35]	chr22	762560	15	INTRON	INTRON	COMT	ENSG00000093010.15	ENST00000676678.1:ENST00000403184.5:ENST00000361682.11:ENST00000403710.5:ENST00000407537.5:ENST00000467943.5:ENST00000678868.1:ENST00000678769.1:ENST00000428707.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	91	2	2.22655	2.5742950000000002	2.92204	0.00823133	0.00202818	0.0812969	0.04086
chr4	73201201	73201301	2160250	0	-	0.28	[0,0.28]	chr4	212794	233	INTRON	INTRON	ANKRD17	ENSG00000132466.20	ENST00000358602.9:ENST00000558247.5:ENST00000330838.10:ENST00000509867.6:ENST00000561029.1:ENST00000559367.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	94	2	2.1357	2.57428	3.01286	0.0338175	0.00129799	0.134476	0.0333764
chr4	55542795	55542893	2149869	0	-	0.377551	(0.35,0.378]	chr4	211547	21	INTRON	INTRON	CLOCK	ENSG00000134852.15	ENST00000513440.6:ENST00000381322.5:ENST00000435527.6:ENST00000506923.5:ENST00000509151.5:ENST00000513033.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	84	2	2.03027	2.57425	3.11823	0.0185322	5.25625e-4	0.108861	0.0206013
chr16	18797328	18797424	6456749	0	-	0.416667	(0.408,0.44]	chr16	622554	14	INTRON	INTRON	ARL6IP1	ENSG00000170540.15	ENST00000304414.12:ENST00000563861.5:ENST00000546206.6:ENST00000562819.5:ENST00000562234.2:ENST00000569976.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	58	2	1.81759	2.5741300000000003	3.33067	0.0316273	0.0024459	0.144405	0.0445752
chr17	39441768	39441866	6767065	0	-	0.418367	(0.408,0.44]	chr17	665589	7	INTRON	INTRON	MED1	ENSG00000125686.12	ENST00000394287.7:ENST00000300651.11:ENST00000577831.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	58	2	1.81759	2.5741300000000003	3.33067	0.0316273	0.0024459	0.144405	0.0445752
chr1	109274710	109274805	180147	0	+	0.652632	(0.57,1]	chr1	19786	8	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	CELSR2	ENSG00000143126.8	ENST00000271332.4:ENST00000498157.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	20	2	2.36411	2.5741	2.78409	0.0408868	0.0116033	0.161534	0.0889104
chr11	19235558	19235654	4933976	0	-	0.604167	(0.57,1]	chr11	462169	1	INTRON	INTRON	E2F8	ENSG00000129173.13	ENST00000527884.5:ENST00000250024.9:ENST00000620009.4	protein_coding	protein_coding	protein_coding	protein_coding	2	20	2	2.36411	2.5741	2.78409	0.0408868	0.0116033	0.161534	0.0889104
chr15	42498428	42498528	6009628	0	+	0.61	(0.57,1]	chr15	572143	21	INTRON	INTRON	SNAP23	ENSG00000092531.10	ENST00000568745.5:ENST00000561526.5:ENST00000568227.5:ENST00000568451.5:ENST00000563765.5:ENST00000349777.5:ENST00000249647.8:ENST00000564153.5:ENST00000566141.5:ENST00000567094.5:ENST00000566327.5:ENST00000568331.5:ENST00000563451.1:ENST00000626061.2:ENST00000627440.2:ENST00000566035.5:ENST00000568859.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	20	2	2.36411	2.5741	2.78409	0.0408868	0.0116033	0.161534	0.0889104
chr16	3676774	3676860	6434057	0	-	0.616279	(0.57,1]	chr16	619329	5	EXON_LNCRNA	EXON_LNCRNA:INTRON	TRAP1	ENSG00000126602.11	ENST00000246957.10:ENST00000538171.5:ENST00000575671.5:ENST00000573872.5:ENST00000576335.5:ENST00000574175.1:ENST00000575854.5:ENST00000576788.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	20	2	2.36411	2.5741	2.78409	0.0408868	0.0116033	0.161534	0.0889104
chr17	81402481	81402581	6690211	0	+	0.64	(0.57,1]	chr17	653831	15	EXON_MRNA	EXON_MRNA:INTRON	BAHCC1	ENSG00000266074.10	ENST00000675386.2:ENST00000584436.7:ENST00000307745.8:ENST00000625166.1	protein_coding	protein_coding	protein_coding	protein_coding:TEC	2	20	2	2.36411	2.5741	2.78409	0.0408868	0.0116033	0.161534	0.0889104
chr19	5095864	5095964	7004699	0	+	0.63	(0.57,1]	chr19	694855	130	INTRON	INTRON	KDM4B	ENSG00000127663.15	ENST00000159111.9:ENST00000611640.4:ENST00000381759.8:ENST00000536461.5:ENST00000589104.5:ENST00000588961.1:ENST00000588361.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	20	2	2.36411	2.5741	2.78409	0.0408868	0.0116033	0.161534	0.0889104
chr20	38424203	38424300	7342193	0	-	0.597938	(0.57,1]	chr20	748303	1	INTRON	INTRON	SNHG17	ENSG00000196756.14	ENST00000654008.2:ENST00000658076.1:ENST00000662982.2:ENST00000456953.7:ENST00000654183.2:ENST00000663540.2:ENST00000651115.2:ENST00000667835.1:ENST00000660885.2:ENST00000662213.1:ENST00000665233.2:ENST00000666268.2:ENST00000665735.1:ENST00000660558.2:ENST00000691280.1:ENST00000658488.2:ENST00000688336.1:ENST00000668054.2:ENST00000690441.1:ENST00000655520.2:ENST00000687490.1:ENST00000664626.1:ENST00000658051.1:ENST00000668042.1:ENST00000686971.1:ENST00000663187.1:ENST00000669114.1:ENST00000653343.1:ENST00000666225.1:ENST00000659186.1:ENST00000671309.1:ENST00000669405.1:ENST00000666806.1:ENST00000657868.1:ENST00000663534.1:ENST00000658141.1:ENST00000689917.1:ENST00000664073.2:ENST00000653697.1:ENST00000656320.1:ENST00000686814.1:ENST00000417578.7:ENST00000654853.1:ENST00000665440.1:ENST00000436764.7:ENST00000668482.2:ENST00000671249.1:ENST00000655692.1:ENST00000662568.1:ENST00000659255.1:ENST00000665693.1:ENST00000693250.1:ENST00000691368.1:ENST00000693227.1:ENST00000690361.1:ENST00000670051.1:ENST00000667912.1:ENST00000693665.1:ENST00000665181.1:ENST00000687532.1:ENST00000691386.1:ENST00000693684.1:ENST00000666331.1:ENST00000669480.1:ENST00000658905.1:ENST00000661252.1:ENST00000669137.1:ENST00000688133.1:ENST00000689414.1:ENST00000691314.1:ENST00000669033.1:ENST00000686145.1:ENST00000653938.1:ENST00000663784.1:ENST00000665003.1:ENST00000659400.1:ENST00000653753.1:ENST00000449469.5:ENST00000654389.1:ENST00000657429.1:ENST00000667412.1:ENST00000654092.1:ENST00000653277.1:ENST00000656023.1:ENST00000692262.1:ENST00000414142.5:ENST00000659753.1:ENST00000670958.1:ENST00000657216.2:ENST00000664636.1:ENST00000657843.1:ENST00000660189.1:ENST00000660064.1:ENST00000655198.1:ENST00000423536.6:ENST00000658455.1:ENST00000666419.1:ENST00000413755.5	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	2	20	2	2.36411	2.5741	2.78409	0.0408868	0.0116033	0.161534	0.0889104
chr2	38305002	38305101	1098606	0	-	0.333333	(0.32,0.35]	chr2	117813	43	INTRON	INTRON	ATL2	ENSG00000119787.14	ENST00000378954.9:ENST00000406122.5:ENST00000405384.6:ENST00000402054.5:ENST00000419554.6:ENST00000651368.1:ENST00000452935.6:ENST00000629272.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	76	2	2.09005	2.574065	3.05808	0.0330483	7.67153e-4	0.133816	0.0254532
chr21	46226171	46226268	7470854	0	-	0.56701	(0.515,0.57]	chr21	761544	31	INTRON	INTRON	LSS	ENSG00000160285.15	ENST00000356396.8:ENST00000397728.8:ENST00000457828.6:ENST00000522411.5:ENST00000464357.1:ENST00000450351.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	72	2	2.32836	2.57404	2.81972	0.0126662	5.44499e-4	0.0982897	0.0215237
chr7	112783875	112783969	3624339	0	-	0.319149	(0.28,0.32]	chr7	337164	2	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	TMEM168	ENSG00000146802.13	ENST00000312814.11:ENST00000454074.5:ENST00000447395.5:ENST00000449743.1:ENST00000441474.1	protein_coding	protein_coding	protein_coding	protein_coding	7	135	2	2.15434	2.57402	2.9937	0.00818138	3.00958e-4	0.0768236	0.0155054
chr20	50598010	50598110	7354491	0	-	0.62	(0.57,1]	chr20	750000	3	SS3_PROX	SS3_PROX:INTRON	RIPOR3	ENSG00000042062.13	ENST00000327979.8:ENST00000045083.6:ENST00000462493.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	61	2	2.15639	2.57393	2.99147	9.37449e-4	6.75142e-4	0.027976	0.0237705
chr12	24859542	24859642	5297009	0	-	0.52	(0.515,0.57]	chr12	503853	92	INTRON	INTRON	BCAT1	ENSG00000060982.15	ENST00000261192.12:ENST00000538118.5:ENST00000342945.9:ENST00000539282.5:ENST00000539780.5:ENST00000544418.1:ENST00000612790.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:processed_transcript	6	75	2	1.98329	2.57392	3.16455	0.0105419	3.23741e-4	0.0860389	0.0159645
chr2	157292682	157292782	896870	0	+	0.42	(0.408,0.44]	chr2	99288	62	INTRON	INTRON	GALNT5	ENSG00000136542.9	ENST00000259056.5	protein_coding	protein_coding	protein_coding	protein_coding	4	60	2	2.1226	2.5738649999999996	3.02513	0.012812	0.0059965	0.0926667	0.0700606
chr21	31684377	31684473	7437329	0	-	0.385417	(0.378,0.408]	chr21	758599	5	EXON_MRNA	EXON_MRNA:INTRON	SCAF4	ENSG00000156304.15	ENST00000286835.12:ENST00000399804.5:ENST00000434667.3:ENST00000467731.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	11	158	2	2.48176	2.57382	2.66588	0.00156732	1.43699e-4	0.0360728	0.0104125
chr20	438293	438390	7302979	0	-	0.57732000000000006	(0.57,1]	chr20	743433	30	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	TBC1D20	ENSG00000125875.15	ENST00000680792.1:ENST00000354200.5:ENST00000461304.5:ENST00000681539.1:ENST00000679741.1:ENST00000680990.1:ENST00000681129.1:ENST00000681414.1:ENST00000681441.1:ENST00000680088.1:ENST00000680284.1:ENST00000681777.1:ENST00000681389.1:ENST00000679895.1:ENST00000680491.1:ENST00000679451.1:ENST00000679953.1:ENST00000461188.6:ENST00000680815.1:ENST00000680521.1:ENST00000681193.1:ENST00000681551.1:ENST00000679973.1:ENST00000680911.1:ENST00000679944.1:ENST00000681636.1:ENST00000680106.1:ENST00000494633.1:ENST00000680050.1:ENST00000681742.1:ENST00000680515.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	46	2	2.06823	2.573805	3.07938	0.00680672	4.22401e-4	0.0711884	0.0183838
chr16	1357499	1357599	6274217	0	+	0.61	(0.57,1]	chr16	599243	4	SS3_PROX	SS3_PROX:INTRON	GNPTG	ENSG00000090581.11	ENST00000204679.9:ENST00000526820.5:ENST00000683366.1:ENST00000527876.5:ENST00000527168.6:ENST00000534197.5:ENST00000683887.1:ENST00000529110.2:ENST00000684126.1:ENST00000529957.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	43	2	2.38391	2.573735	2.76356	0.0104374	5.18582e-4	0.0902296	0.0209322
chr1	52545336	52545436	458493	0	-	0.34	(0.32,0.35]	chr1	55111	63	INTRON	INTRON	TUT4	ENSG00000134744.14	ENST00000371544.7:ENST00000257177.9:ENST00000528642.5:ENST00000484723.6:ENST00000473856.5:ENST00000355809.4:ENST00000470626.1:ENST00000524582.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	42	2	2.40308	2.573615	2.74415	0.0417732	0.0198267	0.161736	0.109608
chr5	87366659	87366759	2668448	0	-	0.35	(0.32,0.35]	chr5	252550	474	INTRON	INTRON	CCNH	ENSG00000134480.16	ENST00000645953.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	2	42	2	2.40308	2.573615	2.74415	0.0417732	0.0198267	0.161736	0.109608
chr6	143430837	143430934	3242165	0	-	0.340206	(0.32,0.35]	chr6	301132	18	INTRON	INTRON	ADAT2	ENSG00000189007.16	ENST00000237283.9:ENST00000606514.5	protein_coding	protein_coding	protein_coding	protein_coding	2	42	2	2.40308	2.573615	2.74415	0.0417732	0.0198267	0.161736	0.109608
chr7	139705941	139706041	3658114	0	-	0.51	(0.476,0.515]	chr7	339537	739	INTRON	INTRON	HIPK2	ENSG00000064393.16	ENST00000406875.8:ENST00000428878.6:ENST00000342645.7	protein_coding	protein_coding	protein_coding	protein_coding	4	64	2	2.21677	2.573615	2.93046	0.0207026	0.00118985	0.110999	0.031662
chr18	36153054	36153154	6891667	0	+	0.44	(0.408,0.44]	chr18	683023	63	INTRON	INTRON	ELP2	ENSG00000134759.14	ENST00000351393.10:ENST00000442325.6:ENST00000358232.11:ENST00000423854.6:ENST00000539560.5:ENST00000350494.10:ENST00000542824.5:ENST00000540799.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	59	2	2.42808	2.573595	2.71911	0.0189489	0.00331055	0.108861	0.0527031
chr16	8061422	8061522	6441123	0	-	0.5	(0.476,0.515]	chr16	620351	538	INTRON	INTRON	ENSG00000260289	ENSG00000260289.2	ENST00000670665.1:ENST00000654046.1:ENST00000567103.2	lncRNA	lncRNA	lncRNA	lncRNA	7	105	2	2.37295	2.573575	2.7742	0.00193884	8.54322e-4	0.0409025	0.0267428
chr6	157913101	157913200	3016674	0	+	0.424242	(0.408,0.44]	chr6	281411	27	INTRON	INTRON	SNX9	ENSG00000130340.17	ENST00000680863.1:ENST00000679814.1:ENST00000680464.1:ENST00000681186.1:ENST00000679732.1:ENST00000681183.1:ENST00000681534.1:ENST00000681651.1:ENST00000680089.1:ENST00000680078.1:ENST00000680974.1:ENST00000680095.1:ENST00000681138.1:ENST00000392185.8:ENST00000679790.1:ENST00000680495.1:ENST00000679691.1:ENST00000681881.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	48	2	1.94273	2.57355	3.20437	0.0456237	0.00306596	0.149888	0.0509893
chr9	131413622	131413722	4217165	0	+	0.45	(0.44,0.476]	chr9	386720	190	INTRON	INTRON	PRRC2B	ENSG00000288701.1	ENST00000682525.1:ENST00000684596.1:ENST00000683519.1:ENST00000682501.1	protein_coding	protein_coding	protein_coding	protein_coding	7	80	2	1.33609	2.57355	3.81101	0.0510862	3.0729e-4	0.176696	0.0161362
chr6	11112250	11112350	2812897	0	+	0.54	(0.515,0.57]	chr6	264729	175	INTRON	INTRON	SMIM13	ENSG00000224531.6	ENST00000416247.4:ENST00000376935.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	105	2	1.65052	2.573535	3.49655	0.0109048	4.90491e-5	0.0873034	0.00572797
chr15	50663945	50664045	6173054	0	-	0.4	(0.378,0.408]	chr15	588397	5	INTRON	INTRON	TRPM7:ENSG00000288645	ENSG00000092439.16:ENSG00000288645.1	ENST00000646667.1:ENST00000560955.5:ENST00000676296.1	protein_coding	protein_coding	protein_coding	protein_coding	3	50	2	2.53503	2.573455	2.61188	0.0319942	0.0047055	0.13174	0.0631419
chr12	50402075	50402174	5136344	0	+	0.434343	(0.408,0.44]	chr12	484345	4	INTRON	INTRON	LARP4	ENSG00000161813.23	ENST00000550522.5:ENST00000293618.12:ENST00000429001.7:ENST00000398473.7:ENST00000548174.5:ENST00000548697.5:ENST00000548993.5:ENST00000522085.5:ENST00000518444.5:ENST00000551886.5:ENST00000523389.5:ENST00000518561.5:ENST00000347328.9:ENST00000550260.1:ENST00000517559.5:ENST00000552445.1	protein_coding	protein_coding	protein_coding	protein_coding	3	48	2	2.05947	2.5734250000000003	3.08738	0.0333232	0.00478231	0.134145	0.0636201
chr15	92986868	92986968	6104594	0	+	0.44	(0.408,0.44]	chr15	581558	8	INTRON	INTRON	CHD2	ENSG00000173575.22	ENST00000626874.2:ENST00000394196.9:ENST00000635856.1:ENST00000637572.1:ENST00000636881.1:ENST00000636306.1:ENST00000637789.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	48	2	2.05947	2.5734250000000003	3.08738	0.0333232	0.00478231	0.134145	0.0636201
chr7	72667690	72667790	3552104	0	-	0.43	(0.408,0.44]	chr7	330530	383	INTRON	INTRON	TYW1B	ENSG00000277149.5	ENST00000612372.4:ENST00000620995.5	protein_coding	protein_coding	protein_coding	protein_coding	3	48	2	2.05947	2.5734250000000003	3.08738	0.0333232	0.00478231	0.134145	0.0636201
chrX	19354190	19354290	7629296	0	+	0.43	(0.408,0.44]	chrX	781184	3	SS3_PROX	SS3_PROX:INTRON	PDHA1	ENSG00000131828.14	ENST00000540249.5:ENST00000696704.1:ENST00000696705.1:ENST00000422285.7:ENST00000423505.6:ENST00000355808.10:ENST00000379805.4:ENST00000417819.6:ENST00000479146.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	48	2	2.05947	2.5734250000000003	3.08738	0.0333232	0.00478231	0.134145	0.0636201
chr4	48856543	48856639	1958479	0	+	0.520833	(0.515,0.57]	chr4	196255	7	EXON_MRNA	EXON_MRNA:INTRON	OCIAD1	ENSG00000109180.15	ENST00000509122.5:ENST00000505922.6:ENST00000396448.6:ENST00000381473.7:ENST00000264312.12:ENST00000444354.6:ENST00000506801.5:ENST00000503016.5:ENST00000425583.6:ENST00000508293.5:ENST00000513391.2:ENST00000508329.1:ENST00000502972.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	79	2	2.53705	2.573415	2.60978	0.00186194	0.00151689	0.039946	0.0352794
chr13	52293236	52293334	5598511	0	-	0.418367	(0.408,0.44]	chr13	535227	13	INTRON	INTRON	TPTE2P2	ENSG00000272281.6	ENST00000605924.5:ENST00000403471.6	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	2	36	2	2.49258	2.57339	2.6542	0.0314608	0.0227514	0.144381	0.117618
chr14	60843233	60843333	5737813	0	+	0.44	(0.408,0.44]	chr14	544915	240	INTRON	INTRON	MNAT1	ENSG00000020426.11	ENST00000261245.9:ENST00000539616.6:ENST00000554002.5:ENST00000554641.1:ENST00000557134.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	36	2	2.49258	2.57339	2.6542	0.0314608	0.0227514	0.144381	0.117618
chr15	58672360	58672459	6192734	0	-	0.424242	(0.408,0.44]	chr15	589951	68	INTRON	INTRON	ADAM10	ENSG00000137845.15	ENST00000260408.8:ENST00000402627.5:ENST00000561288.1:ENST00000396136.6:ENST00000559053.1:ENST00000558733.5:ENST00000439637.5:ENST00000497846.5:ENST00000558004.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	36	2	2.49258	2.57339	2.6542	0.0314608	0.0227514	0.144381	0.117618
chr15	74553979	74554079	6062263	0	+	0.42	(0.408,0.44]	chr15	577157	91	INTRON	INTRON	ARID3B	ENSG00000179361.18	ENST00000622429.1:ENST00000346246.10:ENST00000569680.1:ENST00000566147.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	36	2	2.49258	2.57339	2.6542	0.0314608	0.0227514	0.144381	0.117618
chr16	67850157	67850257	6368453	0	+	0.43	(0.408,0.44]	chr16	611903	22	INTRON	INTRON	NUTF2	ENSG00000102898.12	ENST00000568390.5:ENST00000219169.9:ENST00000567105.5:ENST00000568233.5:ENST00000569436.6:ENST00000568396.2:ENST00000570026.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	36	2	2.49258	2.57339	2.6542	0.0314608	0.0227514	0.144381	0.117618
chr2	131092613	131092713	1229085	0	-	0.41	(0.408,0.44]	chr2	130994	96	INTRON	INTRON	FAM168B	ENSG00000152102.18	ENST00000389915.4:ENST00000409185.5	protein_coding	protein_coding	protein_coding	protein_coding	2	36	2	2.49258	2.57339	2.6542	0.0314608	0.0227514	0.144381	0.117618
chr17	5570801	5570900	6715712	0	-	0.353535	(0.35,0.378]	chr17	658470	104	INTRON	INTRON	NLRP1	ENSG00000091592.16	ENST00000544378.6:ENST00000262467.10:ENST00000613500.4:ENST00000572272.6:ENST00000571451.6:ENST00000269280.8:ENST00000619223.4:ENST00000617618.4:ENST00000345221.7:ENST00000354411.7:ENST00000577119.5:ENST00000571307.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	52	2	2.10859	2.573365	3.03814	0.0272722	0.00767003	0.136494	0.075364
chr17	37289217	37289317	6761864	0	-	0.36	(0.35,0.378]	chr17	664933	4	SS5_PROX	SS5_PROX:INTRON	ACACA	ENSG00000278540.5	ENST00000616317.5:ENST00000614428.4:ENST00000612895.4:ENST00000617649.4:ENST00000613146.4:ENST00000615229.4:ENST00000621960.1:ENST00000617548.1:ENST00000616352.4:ENST00000614789.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	52	2	2.10859	2.573365	3.03814	0.0272722	0.00767003	0.136494	0.075364
chr22	20571008	20571107	7480007	0	+	0.484848	(0.476,0.515]	chr22	763022	20	INTRON	INTRON	MED15	ENSG00000099917.17	ENST00000433831.5:ENST00000292733.11:ENST00000263205.11:ENST00000406969.5:ENST00000382974.6:ENST00000492381.5:ENST00000478831.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	48	2	2.26789	2.57334	2.87879	0.0176567	0.00999149	0.105233	0.0879541
chr16	18911449	18911537	6457960	0	-	0.5	(0.476,0.515]	chr16	622894	2	UTR5	UTR5:EXON_MRNA:INTRON	SMG1	ENSG00000157106.18	ENST00000446231.7:ENST00000532700.6:ENST00000569122.1:ENST00000563836.1	protein_coding	protein_coding	protein_coding	protein_coding	3	47	2	2.26034	2.57332	2.8863	0.0166235	0.0111679	0.110511	0.0877435
chr5	57189091	57189190	2358206	0	+	0.494949	(0.476,0.515]	chr5	227562	123	INTRON	INTRON	GPBP1	ENSG00000062194.16	ENST00000424459.7:ENST00000514387.6:ENST00000506184.7:ENST00000511209.5	protein_coding	protein_coding	protein_coding	protein_coding	3	48	2	2.56033	2.57324	2.58615	0.0287634	0.00515536	0.127066	0.0650394
chr19	10660146	10660245	7013270	0	+	0.343434	(0.32,0.35]	chr19	696757	42	INTRON	INTRON	ILF3	ENSG00000129351.17	ENST00000449870.5:ENST00000587928.5:ENST00000407004.7:ENST00000589998.5:ENST00000589600.5:ENST00000589283.5:ENST00000590009.5:ENST00000593199.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	172	2	2.18719	2.5732	2.95921	0.00282307	1.09781e-4	0.0472361	0.0088711
chr7	140468498	140468597	3661517	0	-	0.494949	(0.476,0.515]	chr7	339916	79	INTRON	INTRON	MKRN1	ENSG00000133606.11	ENST00000255977.7:ENST00000475010.5:ENST00000495305.5:ENST00000474576.5:ENST00000480552.5:ENST00000496169.5:ENST00000443720.6:ENST00000471104.5:ENST00000467513.5:ENST00000494939.1:ENST00000498535.1:ENST00000473444.1:ENST00000475180.5:ENST00000481705.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	138	2	2.17861	2.57317	2.96773	0.00544196	3.29949e-5	0.0646078	0.00460692
chr22	32480655	32480753	7507778	0	+	0.520408	(0.515,0.57]	chr22	766228	10	INTRON	INTRON	FBXO7	ENSG00000100225.18	ENST00000420700.5:ENST00000425028.5:ENST00000266087.12:ENST00000492535.1:ENST00000452138.3:ENST00000397426.5:ENST00000444207.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	103	2	2.29223	2.573105	2.85398	0.00290031	1.24373e-4	0.047789	0.00952358
chrX	130163270	130163369	7888015	0	-	0.393939	(0.378,0.408]	chrX	803166	49	INTRON	INTRON	AIFM1	ENSG00000156709.15	ENST00000675050.1:ENST00000676229.1:ENST00000674546.1:ENST00000287295.8:ENST00000675092.1:ENST00000675427.1:ENST00000675857.1:ENST00000346424.6:ENST00000535724.6:ENST00000527892.5:ENST00000416073.7:ENST00000676328.1:ENST00000676436.1:ENST00000674997.1:ENST00000319908.8:ENST00000675240.1:ENST00000674555.1:ENST00000675037.1:ENST00000674722.1:ENST00000675774.1:ENST00000529877.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	59	2	2.14029	2.572985	3.00568	0.0106742	0.00811866	0.0917199	0.0766625
chr21	43918518	43918618	7414326	0	+	0.39	(0.378,0.408]	chr21	755702	17	INTRON	INTRON	AGPAT3	ENSG00000160216.21	ENST00000291572.13:ENST00000448287.5:ENST00000398061.5:ENST00000327505.6:ENST00000445582.5	protein_coding	protein_coding	protein_coding	protein_coding	4	68	2	2.41037	2.5729699999999998	2.73557	0.0100185	0.00360869	0.0880217	0.0533855
chr16	23917040	23917140	6324571	0	+	0.43	(0.408,0.44]	chr16	605701	233	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000498739.1	protein_coding	protein_coding	protein_coding	protein_coding	8	121	2	2.41003	2.572945	2.73586	0.00211327	2.9686e-4	0.0415897	0.0154293
chr9	131401947	131402047	4217048	0	+	0.42	(0.408,0.44]	chr9	386720	73	INTRON	INTRON	PRRC2B	ENSG00000288701.1	ENST00000682525.1:ENST00000684596.1:ENST00000683519.1:ENST00000682501.1	protein_coding	protein_coding	protein_coding	protein_coding	9	130	2	2.03695	2.572935	3.10892	0.00333392	1.71592e-4	0.0528877	0.0120276
chr10	133298926	133299026	4717576	0	-	0.42	(0.408,0.44]	chr10	435493	1	SS5_PROX	SS5_PROX:INTRON	TUBGCP2	ENSG00000130640.15	ENST00000252936.8:ENST00000682123.1:ENST00000683612.1:ENST00000683786.1:ENST00000682515.1:ENST00000682905.1:ENST00000682256.1:ENST00000684478.1:ENST00000682161.1:ENST00000682332.1:ENST00000684487.1:ENST00000683673.1:ENST00000682093.1:ENST00000683014.1:ENST00000682631.1:ENST00000683829.1:ENST00000683060.1:ENST00000683383.1:ENST00000682990.1:ENST00000417178.7:ENST00000482278.5:ENST00000543663.6:ENST00000683704.1:ENST00000683552.1:ENST00000684421.1:ENST00000424450.2:ENST00000470829.2:ENST00000683031.1:ENST00000487796.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	59	2	1.69566	2.572925	3.45019	0.0453922	0.00152664	0.164236	0.0353936
chr4	39719651	39719751	1953207	0	+	0.4	(0.378,0.408]	chr4	195630	209	INTRON	INTRON	UBE2K	ENSG00000078140.14	ENST00000510934.5:ENST00000261427.10:ENST00000438068.6:ENST00000513231.5:ENST00000503368.5:ENST00000445950.2:ENST00000510719.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	80	2	2.47752	2.57287	2.66822	0.0092831	0.00112898	0.0817766	0.0308465
chr11	68313604	68313704	4815945	0	+	0.4	(0.378,0.408]	chr11	448753	4	INTRON	INTRON	LRP5	ENSG00000162337.12	ENST00000294304.12:ENST00000529993.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	50	2	2.04292	2.5728299999999997	3.10274	0.0326035	0.00586642	0.145164	0.0668095
chr7	26197116	26197215	3506199	0	-	0.333333	(0.32,0.35]	chr7	327181	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HNRNPA2B1	ENSG00000122566.22	ENST00000679318.1:ENST00000677339.1:ENST00000678501.1:ENST00000676903.1:ENST00000608362.2:ENST00000677631.1:ENST00000676749.1:ENST00000677574.1:ENST00000679123.1:ENST00000677906.1:ENST00000476233.2:ENST00000677669.1:ENST00000677321.1:ENST00000678277.1:ENST00000677571.1:ENST00000679124.1:ENST00000676932.1:ENST00000678973.1:ENST00000678183.1:ENST00000679021.1:ENST00000678035.1:ENST00000677075.1:ENST00000678075.1:ENST00000678631.1:ENST00000678998.1:ENST00000490912.6:ENST00000354667.8:ENST00000618183.5:ENST00000677839.1:ENST00000677037.1:ENST00000678449.1:ENST00000679001.1:ENST00000678962.1:ENST00000676524.1:ENST00000678935.1:ENST00000678675.1:ENST00000676746.1:ENST00000356674.8:ENST00000678431.1:ENST00000678697.1:ENST00000678779.1:ENST00000676497.1:ENST00000677396.1:ENST00000360787.8:ENST00000679243.1:ENST00000677656.1:ENST00000463181.5:ENST00000678884.1:ENST00000495810.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	24	390	2	2.08022	2.57281	3.0654	4.09716e-4	1.51227e-5	0.0181306	0.0031179
chr8	37896275	37896375	3935913	0	-	0.41	(0.408,0.44]	chr8	360576	183	INTRON	INTRON	RAB11FIP1	ENSG00000156675.16	ENST00000330843.9:ENST00000287263.8:ENST00000522727.5	protein_coding	protein_coding	protein_coding	protein_coding	14	173	2	1.46648	2.572795	3.67911	0.0171196	2.78576e-6	0.104099	0.00107208
chr7	119890704	119890804	3630248	0	-	0.52	(0.515,0.57]	chr7	337335	895	INTRON	INTRON	LINC02476	ENSG00000225546.6	ENST00000660268.1:ENST00000431071.5:ENST00000426413.2	lncRNA	lncRNA	lncRNA	lncRNA	4	51	2	2.15866	2.5727149999999996	2.98677	0.0100547	0.00632549	0.0848452	0.0722266
chr1	75790617	75790700	144661	0	+	0.457831	(0.44,0.476]	chr1	16328	1	SS5_PROX	SS5_PROX:INTRON	RABGGTB	ENSG00000137955.16	ENST00000496055.5:ENST00000485459.5:ENST00000473406.5:ENST00000319942.8:ENST00000470201.5:ENST00000471759.5:ENST00000491266.5:ENST00000461653.5:ENST00000489450.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	21	320	2	2.33216	2.57259	2.81302	1.82513e-4	1.319e-5	0.01176	0.00287408
chr7	4768449	4768549	3270787	0	+	0.6	(0.57,1]	chr7	303926	61	UTR3	UTR3:EXON_MRNA	FOXK1	ENSG00000164916.11	ENST00000328914.5	protein_coding	protein_coding	protein_coding	protein_coding	4	31	2	1.74185	2.57259	3.40333	0.0401765	9.20604e-4	0.143911	0.0278392
chr8	43057307	43057407	3745856	0	+	0.31	(0.28,0.32]	chr8	348513	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	FNTA	ENSG00000168522.13	ENST00000533559.5:ENST00000526755.5:ENST00000302279.8:ENST00000527153.5:ENST00000533383.5:ENST00000533998.5:ENST00000524546.5:ENST00000531266.5:ENST00000533368.1:ENST00000525699.5:ENST00000529687.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	118	2	2.25881	2.5725800000000003	2.88635	0.009974	5.14339e-4	0.0842795	0.0203753
chr7	112454185	112454283	3381817	0	+	0.44898	(0.44,0.476]	chr7	316764	13	INTRON	INTRON	IFRD1	ENSG00000006652.15	ENST00000675578.1:ENST00000621379.4:ENST00000005558.8:ENST00000443101.6:ENST00000445335.1:ENST00000429071.5:ENST00000403825.8:ENST00000674915.1:ENST00000674887.1:ENST00000675041.1:ENST00000675717.1:ENST00000476927.5:ENST00000535603.5:ENST00000440625.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	66	2	1.68545	2.57251	3.45957	0.0322071	0.00106385	0.132543	0.0300133
chr9	131196966	131197049	4216369	0	+	0.325301	(0.32,0.35]	chr9	386662	2	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	NUP214	ENSG00000126883.19	ENST00000695497.1:ENST00000695498.1:ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000531929.5:ENST00000651334.1:ENST00000524578.6:ENST00000453861.6:ENST00000470765.5:ENST00000483497.6:ENST00000465486.6:ENST00000531600.1:ENST00000528114.1:ENST00000525384.1:ENST00000695500.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	99	2	1.50602	2.572495	3.63897	0.0248261	9.34231e-4	0.132101	0.0280484
chr6	136289612	136289712	3231126	0	-	0.53	(0.515,0.57]	chr6	300410	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	BCLAF1	ENSG00000029363.17	ENST00000640069.1:ENST00000531224.6:ENST00000353331.8:ENST00000527536.5:ENST00000527613.5:ENST00000530767.5:ENST00000527759.5:ENST00000534269.5:ENST00000532384.5:ENST00000530429.5:ENST00000628517.2:ENST00000529826.5:ENST00000528229.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	15	177	2	2.08842	2.57242	3.05642	6.41796e-4	2.03434e-5	0.0228958	0.00366606
chr4	99029418	99029517	2003050	0	+	0.383838	(0.378,0.408]	chr4	199816	1	INTRON	INTRON	METAP1	ENSG00000164024.12	ENST00000510209.5:ENST00000296411.11:ENST00000507537.5:ENST00000506238.5:ENST00000503247.5:ENST00000510107.5:ENST00000513199.5:ENST00000506548.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	49	2	2.35527	2.572365	2.78946	0.0158859	0.0121511	0.101453	0.0963966
chr1	162567741	162567840	238380	0	+	0.343434	(0.32,0.35]	chr1	28704	10	INTRON	INTRON	UAP1	ENSG00000117143.14	ENST00000367925.6:ENST00000367926.9	protein_coding	protein_coding	protein_coding	protein_coding	18	313	2	2.52228	2.57235	2.62242	1.38532e-4	1.06665e-4	0.0107072	0.00875175
chr7	73168324	73168423	3331142	0	+	0.383838	(0.378,0.408]	chr7	309730	126	INTRON	INTRON	GTF2IP4	ENSG00000233369.7	ENST00000544802.5	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	3	49	2	2.29798	2.572305	2.84663	0.0147606	0.0133954	0.106702	0.0946278
chr21	39346535	39346631	7465679	0	-	0.302083	(0.28,0.32]	chr21	760601	7	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	HMGN1	ENSG00000205581.11	ENST00000492280.5:ENST00000431390.5:ENST00000486741.5:ENST00000380749.10:ENST00000288344.14:ENST00000652622.1:ENST00000436324.5:ENST00000380748.5:ENST00000419378.5:ENST00000489072.5:ENST00000482192.5:ENST00000380747.5:ENST00000485550.5:ENST00000490032.5:ENST00000443046.5:ENST00000464078.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	18	337	2	2.39575	2.5723000000000003	2.74885	0.00074924500000000005	2.59071e-5	0.0251179	0.00400663
chr18	2699339	2699439	6865311	0	+	0.47	(0.44,0.476]	chr18	679999	9	INTRON	INTRON	SMCHD1	ENSG00000101596.17	ENST00000320876.11:ENST00000688342.1:ENST00000684915.1:ENST00000693213.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	109	2	2.3641200000000002	2.57229	2.78046	0.0028389	6.33326e-4	0.0473151	0.0227457
chr12	68612155	68612255	5161217	0	+	0.33	(0.32,0.35]	chr12	488573	7	INTRON	INTRON	RAP1B	ENSG00000127314.18	ENST00000460800.5:ENST00000393436.9:ENST00000250559.14:ENST00000425247.6:ENST00000501412.2:ENST00000450214.6:ENST00000463493.5:ENST00000537460.5:ENST00000341355.9:ENST00000538283.5:ENST00000541167.5:ENST00000422358.6:ENST00000489473.6:ENST00000545270.5:ENST00000538980.5:ENST00000543393.5:ENST00000542018.5:ENST00000540209.5:ENST00000378985.7:ENST00000453560.6:ENST00000534899.5:ENST00000542145.5:ENST00000539091.5:ENST00000535492.5:ENST00000540781.5:ENST00000485252.6:ENST00000538877.5:ENST00000541386.5:ENST00000543697.5:ENST00000545720.6:ENST00000541216.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	76	2	1.72405	2.572155	3.42026	0.0275418	0.00219805	0.137011	0.0417893
chr16	295776	295873	6426283	0	-	0.587629	(0.57,1]	chr16	617472	17	INTRON	INTRON	AXIN1	ENSG00000103126.15	ENST00000262320.8:ENST00000461023.5:ENST00000354866.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	26	2	2.47993	2.572155	2.66438	0.0171563	0.007207	0.104099	0.0756278
chr22	20535918	20536018	7479634	0	+	0.58	(0.57,1]	chr22	762964	112	INTRON	INTRON	MED15	ENSG00000099917.17	ENST00000445987.5:ENST00000444094.5:ENST00000414658.5:ENST00000486656.5:ENST00000433831.5:ENST00000432052.5:ENST00000292733.11:ENST00000263205.11:ENST00000477824.5:ENST00000406969.5:ENST00000382974.6:ENST00000441501.5:ENST00000438962.1:ENST00000445189.5:ENST00000451058.5:ENST00000473028.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	26	2	2.47993	2.572155	2.66438	0.0171563	0.007207	0.104099	0.0756278
chr1	153808589	153808689	556601	0	-	0.52	(0.515,0.57]	chr1	65923	40	UTR3	UTR3:EXON_MRNA:INTRON	GATAD2B	ENSG00000143614.10	ENST00000637918.1:ENST00000368655.5	protein_coding	protein_coding	protein_coding	protein_coding	3	41	2	2.45585	2.57209	2.68833	0.0184931	0.00797827	0.108861	0.0798772
chr22	20494006	20494102	7557513	0	-	0.552083	(0.515,0.57]	chr22	772824	4	INTRON	INTRON	KLHL22	ENSG00000099910.17	ENST00000328879.9:ENST00000479601.5:ENST00000451553.1:ENST00000444967.5:ENST00000458248.5:ENST00000443285.5:ENST00000494929.5:ENST00000431430.1:ENST00000470335.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	41	2	2.45585	2.57209	2.68833	0.0184931	0.00797827	0.108861	0.0798772
chr16	21866805	21866904	6461911	0	-	0.444444	(0.44,0.476]	chr16	623467	6	INTRON	INTRON	NPIPB4	ENSG00000185864.18	ENST00000543449.1:ENST00000538859.1	protein_coding	processed_transcript	protein_coding	processed_transcript	16	232	2	2.43917	2.572005	2.70484	1.254e-4	9.31723e-5	0.00957656	0.00857086
chr16	2121177	2121277	6431207	0	-	0.52	(0.515,0.57]	chr16	618727	14	INTRON	INTRON	PKD1	ENSG00000008710.20	ENST00000262304.9:ENST00000423118.5	protein_coding	protein_coding	protein_coding	protein_coding	3	41	2	2.01737	2.572	3.12663	0.0352218	0.00374498	0.137535	0.0562234
chr2	172593348	172593448	920282	0	+	0.38	(0.378,0.408]	chr2	101385	3	SS5_PROX	SS5_PROX:INTRON	PDK1	ENSG00000152256.14	ENST00000392571.6:ENST00000410055.5:ENST00000282077.8:ENST00000466437.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	75	2	1.67073	2.571975	3.47322	0.0219426	0.00147803	0.123836	0.0348908
chr11	66636869	66636968	4811006	0	+	0.525253	(0.515,0.57]	chr11	447879	71	INTRON	INTRON	RBM14-RBM4	ENSG00000248643.5	ENST00000412278.2:ENST00000511114.1:ENST00000421355.1:ENST00000500635.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	41	2	2.08547	2.57193	3.05839	0.0289426	0.00485936	0.1274	0.0640618
chr2	131121378	131121478	864559	0	+	0.53	(0.515,0.57]	chr2	97129	4	SS5_PROX	SS5_PROX:INTRON	PLEKHB2	ENSG00000115762.17	ENST00000403716.5:ENST00000439822.6:ENST00000409158.5:ENST00000234115.10:ENST00000628582.2:ENST00000482225.1:ENST00000693505.1:ENST00000438882.6:ENST00000404460.5:ENST00000409612.5:ENST00000409279.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	41	2	2.08547	2.57193	3.05839	0.0289426	0.00485936	0.1274	0.0640618
chr7	150269652	150269752	3673111	0	-	0.53	(0.515,0.57]	chr7	340876	202	INTRON	INTRON	ACTR3C	ENSG00000106526.11	ENST00000478393.5:ENST00000683684.1:ENST00000252071.8	protein_coding	protein_coding	protein_coding	protein_coding	3	41	2	2.08547	2.57193	3.05839	0.0289426	0.00485936	0.1274	0.0640618
chr11	125609820	125609898	4882804	0	+	0.294872	(0.28,0.32]	chr11	456492	4	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	STT3A	ENSG00000134910.14	ENST00000534472.5:ENST00000529196.5:ENST00000392708.9:ENST00000649491.1:ENST00000531491.5:ENST00000526726.1:ENST00000524639.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	121	2	2.03106	2.5719250000000002	3.11279	0.0208123	1.6215e-4	0.111549	0.0109774
chr20	32412592	32412692	7256369	0	+	0.47	(0.44,0.476]	chr20	737076	402	INTRON	INTRON	ASXL1	ENSG00000171456.21	ENST00000651418.1:ENST00000375687.10:ENST00000613218.4:ENST00000644587.1:ENST00000620121.4:ENST00000646985.1:ENST00000643168.1:ENST00000306058.9:ENST00000645688.1:ENST00000470145.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	65	2	1.96805	2.571885	3.17572	0.0109533	0.00427037	0.0925675	0.0573912
chr6	154767493	154767593	3002158	0	+	0.41	(0.408,0.44]	chr6	280737	251	INTRON	INTRON	SCAF8	ENSG00000213079.10	ENST00000367186.7:ENST00000417268.3:ENST00000461219.5:ENST00000367178.8:ENST00000464628.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	129	2	1.80815	2.571885	3.33562	0.0109379	2.6898e-5	0.0873034	0.00408175
chr4	39768760	39768860	1953701	0	+	0.38	(0.378,0.408]	chr4	195650	76	INTRON	INTRON	UBE2K	ENSG00000078140.14	ENST00000510934.5:ENST00000261427.10:ENST00000438068.6:ENST00000513231.5:ENST00000503368.5:ENST00000445950.2:ENST00000510719.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	69	2	1.71619	2.571845	3.4275	0.0300647	0.00126053	0.129153	0.03295
chr19	55006192	55006287	7100219	0	+	0.536842	(0.515,0.57]	chr19	712211	1	EXON_LNCRNA	EXON_LNCRNA	GP6-AS1	ENSG00000267265.6	ENST00000593060.5:ENST00000690314.1:ENST00000586845.1	lncRNA	lncRNA	lncRNA	lncRNA	7	68	2	1.44339	2.5718449999999997	3.7003	0.0352285	3.73715e-4	0.150284	0.0179087
chr21	6989527	6989626	7425915	0	-	0.313131	(0.28,0.32]	chr21	757520	25	INTRON	INTRON	ENSG00000280018	ENSG00000280018.4	ENST00000623165.3	lncRNA	lncRNA	lncRNA	lncRNA	4	72	2	1.94591	2.571825	3.19774	0.0228482	0.00548491	0.125519	0.0648867
chr2	191678516	191678614	960363	0	+	0.714286	(0.57,1]	chr2	104274	5	UTR5	UTR5:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NABP1	ENSG00000173559.15	ENST00000491331.5:ENST00000307834.9:ENST00000674262.1:ENST00000674360.1:ENST00000674406.1:ENST00000674414.1:ENST00000410026.7:ENST00000674172.1:ENST00000674187.1:ENST00000307849.7:ENST00000425611.9:ENST00000462712.5:ENST00000451500.5:ENST00000409510.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	61	2	2.32807	2.57178	2.81549	9.96313e-4	3.90081e-4	0.0288906	0.0177751
chr3	177144120	177144220	1871912	0	-	0.59	(0.57,1]	chr3	187422	80	INTRON	INTRON	TBL1XR1	ENSG00000177565.18	ENST00000457928.7:ENST00000430069.5:ENST00000673974.1:ENST00000352800.10:ENST00000422442.6:ENST00000428970.5:ENST00000424913.5:ENST00000437738.5:ENST00000431421.5:ENST00000635794.1:ENST00000630796.2:ENST00000450267.5:ENST00000630833.2:ENST00000431674.5:ENST00000422066.5:ENST00000443315.5:ENST00000627825.2:ENST00000427349.5:ENST00000413084.5:ENST00000637137.1:ENST00000491623.2:ENST00000637544.1:ENST00000636187.1:ENST00000636912.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	34	2	2.33295	2.57176	2.81057	0.0122896	0.00169295	0.091087	0.0381936
chr13	45176796	45176895	5478841	0	+	0.565657	(0.515,0.57]	chr13	524950	246	INTRON	INTRON	GTF2F2	ENSG00000188342.12	ENST00000340473.8	protein_coding	protein_coding	protein_coding	protein_coding	3	41	2	2.11313	2.5717499999999998	3.03037	0.0256725	0.00608732	0.133676	0.0676501
chr10	926931	927030	4542540	0	-	0.616162	(0.57,1]	chr10	419310	21	INTRON	INTRON	LARP4B	ENSG00000107929.16	ENST00000316157.8:ENST00000690516.1:ENST00000476529.5:ENST00000406525.6:ENST00000481118.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	26	2	2.05026	2.571695	3.09313	0.0321326	0.00369015	0.145026	0.0535094
chr9	97635510	97635610	4172621	0	+	0.49	(0.476,0.515]	chr9	380133	12	INTRON	INTRON	NCBP1	ENSG00000136937.13	ENST00000478100.3:ENST00000375147.8:ENST00000629069.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	49	2	2.41121	2.57163	2.73205	0.0159328	0.0110342	0.109464	0.0873897
chrX	73979353	73979453	7682452	0	+	0.5	(0.476,0.515]	chrX	786638	110	INTRON	INTRON	JPX	ENSG00000225470.8	ENST00000664637.1:ENST00000639185.1:ENST00000655090.1:ENST00000640437.1:ENST00000660546.1:ENST00000667886.1:ENST00000660840.1:ENST00000657179.1:ENST00000670506.1:ENST00000657910.1:ENST00000662120.1:ENST00000671207.1:ENST00000659254.1:ENST00000656624.1:ENST00000667573.1:ENST00000660856.1:ENST00000660836.1:ENST00000668590.1:ENST00000658649.1:ENST00000414209.6:ENST00000654137.1:ENST00000670994.1:ENST00000602772.5:ENST00000655879.1:ENST00000657372.1:ENST00000657096.1:ENST00000602985.6:ENST00000670685.1:ENST00000670503.1:ENST00000663027.1:ENST00000654995.1:ENST00000602895.6:ENST00000654374.1:ENST00000660087.1:ENST00000665032.1:ENST00000671336.1:ENST00000671476.1:ENST00000667057.1:ENST00000670192.1:ENST00000670464.1:ENST00000665345.1:ENST00000661546.1:ENST00000662543.1:ENST00000602938.6:ENST00000664295.1:ENST00000654005.1:ENST00000669149.1:ENST00000659852.1:ENST00000656509.1:ENST00000602294.6:ENST00000667294.1:ENST00000663470.1:ENST00000602920.6:ENST00000671021.1:ENST00000659849.1:ENST00000667937.1:ENST00000661130.1:ENST00000654196.1:ENST00000655994.1:ENST00000659373.1:ENST00000662239.1:ENST00000670805.1:ENST00000656263.1:ENST00000653069.1:ENST00000657638.1:ENST00000653808.1:ENST00000653929.1:ENST00000653885.1:ENST00000659023.1:ENST00000602546.5:ENST00000659622.1:ENST00000671518.1:ENST00000670408.1	lncRNA	lncRNA	lncRNA	lncRNA	5	67	2	1.89682	2.57156	3.2463	0.0158424	0.00262374	0.101453	0.0470772
chr12	110286762	110286862	5226153	0	+	0.34	(0.32,0.35]	chr12	495234	36	INTRON	INTRON	ATP2A2	ENSG00000174437.18	ENST00000552636.2:ENST00000308664.10:ENST00000539276.7:ENST00000377685.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	19	244	2	1.8184	2.57153	3.32466	0.00176827	8.61975e-5	0.0390329	0.00834244
chrX	41342135	41342225	7645736	0	+	0.355556	(0.35,0.378]	chrX	782509	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DDX3X	ENSG00000215301.11	ENST00000625837.2:ENST00000626301.2:ENST00000629785.2:ENST00000630255.2:ENST00000630370.2:ENST00000630858.2:ENST00000629496.3:ENST00000478993.5:ENST00000457138.7:ENST00000644876.2:ENST00000399959.7:ENST00000644074.1:ENST00000645338.1:ENST00000646196.1:ENST00000642793.1:ENST00000646940.1:ENST00000644307.1:ENST00000645561.1:ENST00000645080.1:ENST00000642597.1:ENST00000642722.1:ENST00000644109.1:ENST00000644958.1:ENST00000646122.1:ENST00000644513.1:ENST00000645589.1:ENST00000441189.4:ENST00000646822.1:ENST00000631641.2:ENST00000615742.4:ENST00000646223.1:ENST00000643963.1:ENST00000646319.1:ENST00000642624.1:ENST00000542215.5:ENST00000644073.1:ENST00000644677.1:ENST00000615313.5:ENST00000642322.1:ENST00000622198.5:ENST00000645120.1:ENST00000646107.1:ENST00000646627.1:ENST00000645253.1:ENST00000642589.1:ENST00000645380.1:ENST00000646390.1:ENST00000642424.1:ENST00000642161.1:ENST00000645574.1:ENST00000646679.1:ENST00000642763.1:ENST00000644260.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	85	2	2.36677	2.57151	2.77625	0.0139343	7.04769e-4	0.0957526	0.0241881
chrX	123603249	123603349	7877709	0	-	0.34	(0.32,0.35]	chrX	802388	28	UTR3	UTR3:EXON_MRNA:INTRON	THOC2	ENSG00000125676.20	ENST00000448128.5:ENST00000245838.13:ENST00000441692.5:ENST00000492203.1:ENST00000497887.5:ENST00000618150.4:ENST00000432353.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	77	2	1.59364	2.57145	3.54926	0.0413426	0.00133843	0.161557	0.0335491
chr7	103349562	103349661	3373651	0	+	0.515152	(0.476,0.515]	chr7	315781	9	INTRON	INTRON	PSMC2	ENSG00000161057.13	ENST00000678493.1:ENST00000457587.5:ENST00000679205.1:ENST00000679341.1:ENST00000435765.5:ENST00000679250.1:ENST00000679046.1:ENST00000292644.5:ENST00000677281.1:ENST00000425206.6:ENST00000678488.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	99	2	2.44393	2.571395	2.69886	0.00385209	7.12759e-4	0.0542786	0.0243332
chr17	81582922	81583022	6849048	0	-	0.68	(0.57,1]	chr17	678158	105	INTRON	INTRON	NPLOC4	ENSG00000182446.14	ENST00000331134.11:ENST00000374747.9:ENST00000574897.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	48	2	2.55379	2.571385	2.58898	0.0015786	0.00134929	0.0362091	0.0338207
chr7	100338990	100339089	3364366	0	+	0.313131	(0.28,0.32]	chr7	314636	1	SS5_PROX	SS5_PROX:INTRON	STAG3L5P:STAG3L5P-PVRIG2P-PILRB	ENSG00000242294.6:ENSG00000272752.6	ENST00000473757.5:ENST00000470714.5:ENST00000310771.8:ENST00000483329.6:ENST00000422479.5:ENST00000444874.5:ENST00000488972.6:ENST00000493499.1	lncRNA	retained_intron	lncRNA:transcribed_unprocessed_pseudogene	retained_intron:lncRNA:processed_transcript	6	94	2	1.56174	2.57137	3.581	0.039921	8.63544e-4	0.143115	0.0266494
chr14	102619415	102619515	5822801	0	+	0.33	(0.32,0.35]	chr14	552490	257	INTRON	INTRON	RCOR1	ENSG00000089902.10	ENST00000262241.7	protein_coding	protein_coding	protein_coding	protein_coding	11	191	2	2.39137	2.57123	2.75109	0.00171939	9.09809e-5	0.0374701	0.00797978
chr8	25447923	25448021	3926242	0	-	0.469388	(0.44,0.476]	chr8	359451	13	INTRON	INTRON	KCTD9	ENSG00000104756.16	ENST00000221200.9:ENST00000519665.5:ENST00000523140.5:ENST00000522493.5:ENST00000518067.5:ENST00000518997.5:ENST00000523294.5:ENST00000521458.5:ENST00000524217.1:ENST00000520405.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	97	2	2.22991	2.571215	2.91252	0.00208483	0.00164027	0.0424672	0.0369207
chr6	37296448	37296547	2855704	0	+	0.393939	(0.378,0.408]	chr6	269985	47	INTRON	INTRON	TBC1D22B	ENSG00000065491.8	ENST00000373491.3	protein_coding	protein_coding	protein_coding	protein_coding	8	110	2	1.99801	2.57118	3.14435	0.00408225	6.4029e-4	0.0581373	0.0231685
chr1	15923639	15923737	35433	0	+	0.367347	(0.35,0.378]	chr1	4312	9	INTRON	INTRON	SPEN	ENSG00000065526.12	ENST00000673875.1:ENST00000375759.8	protein_coding	protein_coding	protein_coding	protein_coding	6	101	2	2.54394	2.571105	2.59827	0.0028214	0.0016492	0.0472361	0.0375159
chr19	39351143	39351239	7067282	0	+	0.520833	(0.515,0.57]	chr19	705677	15	EXON_MRNA	EXON_MRNA:INTRON	SAMD4B	ENSG00000179134.16	ENST00000610417.5:ENST00000598913.5:ENST00000314471.10:ENST00000601613.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	66	2	2.22166	2.5710550000000003	2.92045	0.00735516	0.00128922	0.0765982	0.0328334
chr7	152400247	152400347	3680936	0	-	0.44	(0.408,0.44]	chr7	341660	412	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000682301.1:ENST00000452749.2:ENST00000680867.1:ENST00000683800.1:ENST00000684278.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	77	2	2.15938	2.57099	2.9826	0.011260300000000001	9.23082e-4	0.0884004	0.0278392
chr15	63155067	63155164	6198505	0	-	0.484536	(0.476,0.515]	chr15	590969	2	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	RPS27L	ENSG00000185088.14	ENST00000559763.1:ENST00000330964.10:ENST00000482846.1:ENST00000635699.1:ENST00000455271.5:ENST00000462430.5:ENST00000411926.1:ENST00000439025.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	47	2	2.37731	2.570955	2.7646	0.0162075	0.0111793	0.101453	0.0937192
chr7	64688268	64688366	3320100	0	+	0.5	(0.476,0.515]	chr7	308672	15	INTRON	INTRON	ZNF107	ENSG00000196247.13	ENST00000395391.2:ENST00000684016.1:ENST00000620827.6:ENST00000423627.6:ENST00000613690.5:ENST00000344930.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	47	2	2.37731	2.570955	2.7646	0.0162075	0.0111793	0.101453	0.0937192
chr15	85011229	85011329	6089224	0	+	0.35	(0.32,0.35]	chr15	579504	285	INTRON	INTRON	PDE8A	ENSG00000073417.15	ENST00000310298.8:ENST00000557957.5:ENST00000394553.6:ENST00000339708.9:ENST00000478717.5:ENST00000485596.5:ENST00000559742.5:ENST00000559086.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	55	2	2.19668	2.5708900000000003	2.9451	0.021398	0.011051	0.123719	0.0873897
chr14	52641593	52641692	5894513	0	-	0.393939	(0.378,0.408]	chr14	559768	18	UTR3	UTR3:EXON_MRNA	ERO1A	ENSG00000197930.13	ENST00000395686.8	protein_coding	protein_coding	protein_coding	protein_coding	17	255	2	2.00283	2.57088	3.13893	0.00197353	2.78862e-6	0.040321	0.00107234
chr21	37080803	37080902	7404896	0	+	0.292929	(0.28,0.32]	chr21	754521	70	INTRON	INTRON	TTC3	ENSG00000182670.14	ENST00000492275.6:ENST00000418766.6:ENST00000485402.5:ENST00000450533.6:ENST00000438055.5:ENST00000696812.1:ENST00000696811.1:ENST00000463216.6:ENST00000481605.6:ENST00000540756.5:ENST00000494243.5:ENST00000399010.5:ENST00000411496.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	148	2	2.17284	2.57087	2.9689	0.00194987	0.00160875	0.0400465	0.03684
chr4	102819154	102819254	2213276	0	-	0.48	(0.476,0.515]	chr4	216759	63	INTRON	INTRON	UBE2D3	ENSG00000109332.20	ENST00000453744.7:ENST00000394804.6:ENST00000394803.9:ENST00000394801.8:ENST00000343106.9:ENST00000503742.5:ENST00000321805.11:ENST00000350435.11:ENST00000338145.7:ENST00000349311.12:ENST00000504211.5:ENST00000357194.10:ENST00000505207.5:ENST00000507845.5:ENST00000502404.5:ENST00000508635.5:ENST00000505307.5:ENST00000510129.5:ENST00000508476.5:ENST00000502563.5:ENST00000508238.5:ENST00000514755.5:ENST00000508974.5:ENST00000502690.5:ENST00000508818.5:ENST00000503418.5:ENST00000508249.1:ENST00000513098.5:ENST00000503282.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	76	2	2.17347	2.570855	2.96824	0.010447	9.98194e-4	0.0855102	0.0290732
chr3	40534388	40534488	1402565	0	+	0.29	(0.28,0.32]	chr3	147394	14	UTR3	UTR3:EXON_MRNA:INTRON	ZNF621	ENSG00000172888.12	ENST00000310898.5:ENST00000339296.10:ENST00000490457.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	158	2	2.49738	2.57081	2.64424	0.00159565	0.00129443	0.0367961	0.0329538
chr1	52088737	52088835	101587	0	+	0.357143	(0.35,0.378]	chr1	13457	21	UTR3	UTR3:EXON_MRNA	BTF3L4	ENSG00000134717.18	ENST00000313334.13	protein_coding	protein_coding	protein_coding	protein_coding	4	62	2	1.92704	2.5708	3.21456	0.0228255	0.00420814	0.125469	0.0572185
chr1	173894984	173895084	257016	0	+	0.43	(0.408,0.44]	chr1	30716	90	UTR3	UTR3:EXON_MRNA	ZBTB37	ENSG00000185278.16	ENST00000367701.10	protein_coding	protein_coding	protein_coding	protein_coding	3	50	2	1.85305	2.570785	3.28852	0.0543543	0.00287185	0.182243	0.0474836
chr6	4059812	4059912	2790099	0	+	0.46	(0.44,0.476]	chr6	263558	6	INTRON	INTRON	PRPF4B	ENSG00000112739.17	ENST00000480058.5:ENST00000337659.11:ENST00000481109.5:ENST00000463634.6:ENST00000494674.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	130	2	2.23147	2.57069	2.90991	0.00172509	3.20441e-4	0.0374701	0.0159645
chr2	53962956	53963056	1120498	0	-	0.49	(0.476,0.515]	chr2	120102	133	INTRON	INTRON	PSME4	ENSG00000068878.15	ENST00000404125.6:ENST00000389993.7:ENST00000481518.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	14	203	2	2.44788	2.570665	2.69345	5.68762e-4	3.5771e-5	0.0220433	0.00479158
chr1	77969504	77969584	494435	0	-	0.3	(0.28,0.32]	chr1	58561	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	FUBP1	ENSG00000162613.17	ENST00000370768.7:ENST00000294623.8:ENST00000370767.5:ENST00000421641.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	87	2	2.36128	2.57066	2.78004	0.0193244	0.0025684	0.108861	0.0466761
chr16	89889948	89890046	6422605	0	+	0.520408	(0.515,0.57]	chr16	616750	8	UTR3	UTR3:EXON_MRNA:INTRON	TCF25	ENSG00000141002.20	ENST00000640279.1:ENST00000263347.11:ENST00000263346.13:ENST00000561958.5:ENST00000614813.4:ENST00000565196.5:ENST00000564652.5:ENST00000568412.5:ENST00000566751.5:ENST00000562256.5:ENST00000568409.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	58	2	1.44089	2.570595	3.7003	0.0617046	3.73715e-4	0.193423	0.0179087
chr10	60794267	60794364	4435933	0	+	0.298969	(0.28,0.32]	chr10	409203	4	UTR3	UTR3:EXON_MRNA	CDK1	ENSG00000170312.17	ENST00000316629.8:ENST00000395284.8:ENST00000448257.6:ENST00000373809.2	protein_coding	protein_coding	protein_coding	protein_coding	16	238	2	1.76554	2.5704599999999997	3.37538	0.00364706	8.95268e-5	0.0557592	0.00844245
chr16	30954394	30954485	6339974	0	+	0.593407	(0.57,1]	chr16	608084	4	UTR3	UTR3:EXON_MRNA:INTRON	ENSG00000261487:ORAI3	ENSG00000261487.1:ENSG00000175938.7	ENST00000562642.1:ENST00000318663.5:ENST00000566237.1:ENST00000562699.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	14	110	2	2.19433	2.5704599999999997	2.94659	7.47029e-4	3.47145e-6	0.0250452	0.00132312
chr9	32963581	32963680	4242372	0	-	0.434343	(0.408,0.44]	chr9	389930	156	INTRON	INTRON	APTX	ENSG00000137074.20	ENST00000672846.1:ENST00000672519.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	5	77	2	2.3494	2.57032	2.79124	0.00462504	0.00276922	0.062717	0.0469265
chr7	155760816	155760916	3453076	0	+	0.46	(0.44,0.476]	chr7	322730	138	INTRON	INTRON	RBM33	ENSG00000184863.11	ENST00000401878.8:ENST00000392761.3:ENST00000438356.1:ENST00000341148.7	protein_coding	protein_coding	protein_coding	protein_coding	6	87	2	2.25992	2.57027	2.88062	0.00324123	0.001878	0.0524329	0.039073
chr2	241325466	241325566	1053711	0	+	0.4	(0.378,0.408]	chr2	112216	1	SS3_PROX	SS3_PROX:INTRON	SEPTIN2	ENSG00000168385.18	ENST00000391973.6:ENST00000428282.5:ENST00000492978.5:ENST00000360051.7:ENST00000407017.5:ENST00000445030.5:ENST00000428524.5:ENST00000469434.5:ENST00000616972.4:ENST00000495463.5:ENST00000482304.5:ENST00000475474.5:ENST00000401990.5:ENST00000469175.5:ENST00000407971.5:ENST00000457335.5:ENST00000436795.5:ENST00000494824.5:ENST00000411484.5:ENST00000462147.5:ENST00000434955.5:ENST00000466211.5:ENST00000391971.7:ENST00000402092.6:ENST00000484740.1:ENST00000473479.5:ENST00000464128.5:ENST00000441533.5:ENST00000467971.5:ENST00000425899.5:ENST00000443492.5:ENST00000437066.5:ENST00000429791.5:ENST00000420786.5:ENST00000475823.5:ENST00000449239.5:ENST00000366210.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	81	2	2.35103	2.57017	2.78931	0.014158	6.20851e-4	0.0959618	0.0223951
chr12	64677392	64677491	5155667	0	+	0.383838	(0.378,0.408]	chr12	488093	659	INTRON	INTRON	RASSF3	ENSG00000153179.13	ENST00000637125.1:ENST00000542104.6:ENST00000283172.8:ENST00000336061.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	49	2	2.41037	2.57015	2.72993	0.0188736	0.0100185	0.108861	0.0880217
chr2	39100244	39100344	1102130	0	-	0.38	(0.378,0.408]	chr2	118304	19	INTRON	INTRON	SOS1	ENSG00000115904.15	ENST00000692089.1:ENST00000402219.8:ENST00000690876.1:ENST00000395038.6:ENST00000691229.1:ENST00000689668.1:ENST00000690679.1:ENST00000461545.2:ENST00000451331.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	49	2	2.41037	2.57015	2.72993	0.0188736	0.0100185	0.108861	0.0880217
chr7	137985964	137986064	3655580	0	-	0.4	(0.378,0.408]	chr7	339370	522	INTRON	INTRON	CREB3L2	ENSG00000182158.16	ENST00000330387.11:ENST00000456390.5:ENST00000452463.5	protein_coding	protein_coding	protein_coding	protein_coding	3	49	2	2.41037	2.57015	2.72993	0.0188736	0.0100185	0.108861	0.0880217
chr1	8686684	8686784	372472	0	-	0.41	(0.408,0.44]	chr1	43541	299	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000656437.1:ENST00000659924.1:ENST00000480342.5:ENST00000468247.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	48	2	1.88062	2.57005	3.25948	0.0534548	0.00246454	0.162935	0.0459102
chr16	21407259	21407359	6460373	0	-	0.41	(0.408,0.44]	chr16	623167	4	SS3_PROX	SS3_PROX:INTRON	NPIPB3	ENSG00000169246.16	ENST00000504841.6:ENST00000419180.6:ENST00000448012.6:ENST00000542953.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	48	2	1.88062	2.57005	3.25948	0.0534548	0.00246454	0.162935	0.0459102
chr3	186932889	186932988	1586196	0	+	0.434343	(0.408,0.44]	chr3	164314	11	INTRON	INTRON	ST6GAL1	ENSG00000073849.16	ENST00000676786.1:ENST00000463542.1:ENST00000169298.8:ENST00000457772.6:ENST00000455441.5:ENST00000427315.5:ENST00000677292.1:ENST00000468614.1:ENST00000458216.5:ENST00000430309.5:ENST00000417392.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	48	2	1.88062	2.57005	3.25948	0.0534548	0.00246454	0.162935	0.0459102
chr5	69193647	69193746	2380142	0	+	0.434343	(0.408,0.44]	chr5	229200	14	INTRON	INTRON	CENPH	ENSG00000153044.10	ENST00000515001.5:ENST00000283006.7:ENST00000513575.5:ENST00000514753.1:ENST00000502689.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	48	2	1.88062	2.57005	3.25948	0.0534548	0.00246454	0.162935	0.0459102
chr19	40460933	40461033	7184534	0	-	0.37	(0.35,0.378]	chr19	726754	20	INTRON	INTRON	BLVRB	ENSG00000090013.11	ENST00000643519.1:ENST00000263368.9:ENST00000595483.5:ENST00000643596.1:ENST00000597870.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	146	2	2.53498	2.5700000000000003	2.60502	0.00138346	3.28626e-4	0.0338784	0.0161279
chr4	150632212	150632312	2267893	0	-	0.33	(0.32,0.35]	chr4	220713	327	INTRON	INTRON	LRBA	ENSG00000198589.14	ENST00000357115.9:ENST00000651943.2:ENST00000510413.5:ENST00000509835.5:ENST00000651695.1:ENST00000651035.1:ENST00000507224.5:ENST00000513021.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	108	2	2.51487	2.5700000000000003	2.62513	0.00349334	0.00156724	0.0523105	0.0365592
chr3	69051253	69051348	1734712	0	-	0.536842	(0.515,0.57]	chr3	176805	19	INTRON	INTRON	TMF1	ENSG00000144747.17	ENST00000398559.7:ENST00000646304.1:ENST00000646708.1:ENST00000488010.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	75	2	2.41918	2.5699899999999998	2.7208	0.00306828	0.0013845	0.0494933	0.0341261
chr14	100367406	100367499	5968815	0	-	0.473118	(0.44,0.476]	chr14	567112	10	INTRON	INTRON	WARS1	ENSG00000140105.18	ENST00000392882.7:ENST00000358655.8:ENST00000355338.6:ENST00000344102.9:ENST00000557135.5:ENST00000556645.5:ENST00000553395.5:ENST00000556504.5:ENST00000557722.5:ENST00000557297.5:ENST00000556435.5:ENST00000553808.5:ENST00000554331.5:ENST00000555063.5:ENST00000556338.5:ENST00000557239.5:ENST00000556698.5:ENST00000553524.5:ENST00000555410.5:ENST00000556579.5:ENST00000554772.5:ENST00000556660.5:ENST00000556783.5:ENST00000553413.5:ENST00000557094.5:ENST00000553769.6:ENST00000553545.5:ENST00000554820.5:ENST00000557347.5:ENST00000554509.5:ENST00000556209.5:ENST00000554605.5:ENST00000555813.5:ENST00000556695.5:ENST00000556295.5:ENST00000555031.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	59	2	2.46422	2.56997	2.67572	0.0212064	0.00282908	0.113017	0.0491595
chr16	58529048	58529148	6495311	0	-	0.29	(0.28,0.32]	chr16	628410	4	SS3_PROX	SS3_PROX:INTRON	CNOT1	ENSG00000125107.19	ENST00000317147.10:ENST00000563130.5:ENST00000569240.5:ENST00000567188.5:ENST00000570139.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	45	2	2.46018	2.569965	2.67975	0.0375904	0.0252505	0.156054	0.12011
chr18	73245401	73245501	6988427	0	-	0.4	(0.378,0.408]	chr18	691704	443	INTRON	INTRON	LINC02864	ENSG00000263711.6	ENST00000584544.5:ENST00000581011.5:ENST00000581862.6:ENST00000669547.1:ENST00000661525.1:ENST00000583405.5	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	3	49	2	2.23831	2.569965	2.90162	0.0179575	0.0113157	0.114265	0.0886121
chr2	62306434	62306534	790391	0	+	0.39	(0.378,0.408]	chr2	88708	86	INTRON	INTRON	ENSG00000228541	ENSG00000228541.2	ENST00000688476.1:ENST00000689590.1:ENST00000687402.1:ENST00000687773.1	lncRNA	lncRNA	lncRNA	lncRNA	3	49	2	2.23831	2.569965	2.90162	0.0179575	0.0113157	0.114265	0.0886121
chr4	55473186	55473285	2149162	0	-	0.434343	(0.408,0.44]	chr4	211500	20	INTRON	INTRON	CLOCK	ENSG00000134852.15	ENST00000513440.6:ENST00000309964.8:ENST00000381322.5:ENST00000506747.5:ENST00000435527.6:ENST00000508049.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	58	2	1.58763	2.56989	3.55215	0.0639217	7.01039e-4	0.177824	0.0241881
chr15	28213241	28213341	6122929	0	-	0.4	(0.378,0.408]	chr15	583197	1	SS5_PROX	SS5_PROX:INTRON	HERC2	ENSG00000128731.18	ENST00000261609.13	protein_coding	protein_coding	protein_coding	protein_coding	4	59	2	2.18512	2.569855	2.95459	0.00957623	0.00902136	0.0851259	0.0820838
chr15	49184316	49184416	6019250	0	+	0.33	(0.32,0.35]	chr15	573674	134	INTRON	INTRON	GALK2	ENSG00000156958.15	ENST00000559883.5:ENST00000559963.5:ENST00000327171.7:ENST00000560654.5:ENST00000558775.5:ENST00000561074.5:ENST00000559040.1:ENST00000396509.6:ENST00000558956.5:ENST00000559208.5:ENST00000560031.6:ENST00000559095.1:ENST00000560119.5:ENST00000558145.5:ENST00000544523.5:ENST00000560138.5:ENST00000559423.5:ENST00000559454.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	41	2	2.23182	2.56984	2.90786	0.068598	0.00993008	0.184298	0.0877296
chr6	147688013	147688112	2990876	0	+	0.333333	(0.32,0.35]	chr6	280163	115	INTRON	INTRON	ENSG00000227681	ENSG00000227681.5	ENST00000427015.1:ENST00000432506.5:ENST00000442094.5	lncRNA	lncRNA	lncRNA	lncRNA	2	41	2	2.23182	2.56984	2.90786	0.068598	0.00993008	0.184298	0.0877296
chr8	129534057	129534156	4060623	0	-	0.323232	(0.32,0.35]	chr8	369648	235	INTRON	INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1:ENST00000676273.1:ENST00000667643.1:ENST00000668791.1:ENST00000663716.1:ENST00000663572.1:ENST00000676148.1:ENST00000667962.1:ENST00000674877.1:ENST00000675316.1:ENST00000674656.1:ENST00000446592.7:ENST00000667341.1:ENST00000675186.1:ENST00000652971.1:ENST00000661447.1:ENST00000674863.1:ENST00000675498.1:ENST00000675527.1:ENST00000676108.1:ENST00000657647.1:ENST00000675589.1:ENST00000675913.1:ENST00000675109.1:ENST00000671632.1:ENST00000671311.1:ENST00000676099.1:ENST00000660652.1:ENST00000675522.1:ENST00000675183.1:ENST00000658861.1:ENST00000663991.1:ENST00000675044.1:ENST00000675435.1:ENST00000674639.1:ENST00000676069.1:ENST00000675532.1:ENST00000674762.1:ENST00000523151.6:ENST00000675948.1:ENST00000665364.1:ENST00000657251.1:ENST00000675166.1:ENST00000674883.1:ENST00000675867.1:ENST00000674580.1:ENST00000675393.1:ENST00000520048.1:ENST00000674906.1:ENST00000676030.1:ENST00000670588.1:ENST00000675072.1:ENST00000664936.1:ENST00000652914.1:ENST00000657069.1	lncRNA	lncRNA	lncRNA	lncRNA	2	41	2	2.23182	2.56984	2.90786	0.068598	0.00993008	0.184298	0.0877296
chr9	131199515	131199610	4216396	0	+	0.326316	(0.32,0.35]	chr9	386667	1	INTRON	INTRON	NUP214	ENSG00000126883.19	ENST00000695497.1:ENST00000695498.1:ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000651334.1:ENST00000524578.6:ENST00000453861.6:ENST00000483497.6:ENST00000695500.1:ENST00000650694.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	41	2	2.23182	2.56984	2.90786	0.068598	0.00993008	0.184298	0.0877296
chr4	151008806	151008906	2271707	0	-	0.49	(0.476,0.515]	chr4	220921	794	INTRON	INTRON	LRBA	ENSG00000198589.14	ENST00000357115.9:ENST00000651943.2:ENST00000510413.5:ENST00000651035.1:ENST00000507224.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	78	2	1.83961	2.569795	3.29998	0.0314489	1.88247e-4	0.13151	0.011951
chr16	30292055	30292146	6472930	0	-	0.362637	(0.35,0.378]	chr16	625669	3	INTRON	INTRON	SMG1P5	ENSG00000183604.15	ENST00000529428.5:ENST00000411546.4:ENST00000691460.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	2	40	2	2.30249	2.5697900000000002	2.83709	0.0519726	0.01435	0.176696	0.0966737
chr19	9565348	9565446	7132784	0	-	0.397959	(0.378,0.408]	chr19	718804	52	UTR3	UTR3:EXON_MRNA	ZNF121	ENSG00000197961.12	ENST00000320451.7:ENST00000586602.5	protein_coding	protein_coding	protein_coding	protein_coding	16	242	2	2.33607	2.5696399999999997	2.80321	4.4727e-4	2.85797e-5	0.019571	0.00423319
chr1	31309244	31309344	61282	0	+	0.28	[0,0.28]	chr1	7820	117	INTRON	INTRON	ZCCHC17	ENSG00000121766.16	ENST00000618216.4:ENST00000546109.5:ENST00000616393.4:ENST00000616859.4:ENST00000615916.4:ENST00000479629.5:ENST00000373714.5:ENST00000344147.10:ENST00000627541.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	68	2	2.20073	2.5696149999999998	2.9385	0.0235708	0.0142776	0.128907	0.0963703
chr5	10371715	10371815	2317827	0	+	0.31	(0.28,0.32]	chr5	224612	167	INTRON	INTRON	MARCHF6	ENSG00000145495.16	ENST00000274140.10:ENST00000449913.6:ENST00000502795.5:ENST00000511802.5:ENST00000503788.5:ENST00000640713.1:ENST00000510872.5:ENST00000507863.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	115	2	1.47985	2.569595	3.65934	0.0239637	0.00103147	0.129293	0.029231300000000002
chr7	152289174	152289274	3679814	0	-	0.38	(0.378,0.408]	chr7	341623	24	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000684262.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	91	2	2.43777	2.56959	2.70141	0.00411614	0.00144299	0.0564981	0.034834
chr3	179574652	179574745	1567576	0	+	0.322581	(0.32,0.35]	chr3	162195	3	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	ACTL6A	ENSG00000136518.17	ENST00000450518.6:ENST00000392662.5:ENST00000468767.6:ENST00000429709.7:ENST00000487978.5:ENST00000486471.1:ENST00000467383.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	56	2	2.01768	2.5695699999999997	3.12146	0.0361337	0.00630799	0.152563	0.0687526
chr4	74160967	74161066	1972332	0	+	0.333333	(0.32,0.35]	chr4	197723	3	EXON_LNCRNA	EXON_LNCRNA:INTRON	MTHFD2L	ENSG00000163738.19	ENST00000429519.5:ENST00000429335.5:ENST00000433372.5:ENST00000423607.6:ENST00000395759.6:ENST00000325278.7:ENST00000359107.10:ENST00000461101.1:ENST00000484725.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	56	2	2.01768	2.5695699999999997	3.12146	0.0361337	0.00630799	0.152563	0.0687526
chr3	177148905	177149005	1871960	0	-	0.54	(0.515,0.57]	chr3	187422	128	INTRON	INTRON	TBL1XR1	ENSG00000177565.18	ENST00000457928.7:ENST00000430069.5:ENST00000673974.1:ENST00000352800.10:ENST00000422442.6:ENST00000428970.5:ENST00000424913.5:ENST00000437738.5:ENST00000431421.5:ENST00000635794.1:ENST00000630796.2:ENST00000450267.5:ENST00000630833.2:ENST00000431674.5:ENST00000422066.5:ENST00000443315.5:ENST00000627825.2:ENST00000427349.5:ENST00000413084.5:ENST00000637137.1:ENST00000491623.2:ENST00000637544.1:ENST00000636187.1:ENST00000636912.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	62	2	1.64415	2.569555	3.49496	0.0231656	9.61701e-4	0.127036	0.0282401
chr20	6022582	6022681	7230715	0	+	0.484848	(0.476,0.515]	chr20	734840	67	INTRON	INTRON	CRLS1	ENSG00000088766.12	ENST00000452938.5:ENST00000378863.9:ENST00000378868.4:ENST00000489345.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	57	2	1.83961	2.5694999999999997	3.29939	0.0314489	0.00211868	0.13151	0.0425644
chr1	111170152	111170252	184031	0	+	0.34	(0.32,0.35]	chr1	20432	85	INTRON	INTRON	CEPT1	ENSG00000134255.15	ENST00000545121.5:ENST00000498239.5:ENST00000357172.9:ENST00000460443.5:ENST00000478042.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	66	2	1.97654	2.569455	3.16237	0.0199113	0.00550276	0.120668	0.0648867
chr1	155727107	155727205	229904	0	+	0.357143	(0.35,0.378]	chr1	27036	1	SS3_PROX	SS3_PROX:INTRON	DAP3	ENSG00000132676.16	ENST00000471642.6:ENST00000471214.5:ENST00000343043.7:ENST00000368336.10:ENST00000535183.5:ENST00000421487.6:ENST00000470830.5:ENST00000497826.5:ENST00000463575.5:ENST00000479151.5	protein_coding	protein_coding	protein_coding	protein_coding	9	143	2	2.22939	2.56942	2.90945	0.00207197	3.57589e-4	0.0411801	0.0169202
chr17	37085481	37085579	6759751	0	-	0.346939	(0.32,0.35]	chr17	664611	6	UTR3	UTR3:EXON_MRNA	ACACA	ENSG00000278540.5	ENST00000616317.5:ENST00000614428.4:ENST00000612895.4:ENST00000619546.4	protein_coding	protein_coding	protein_coding	protein_coding	2	41	2	2.56618	2.569405	2.57263	0.0312297	0.0274185	0.136498	0.13151
chr5	31507821	31507921	2596760	0	-	0.35	(0.32,0.35]	chr5	246668	28	INTRON	INTRON	DROSHA	ENSG00000113360.17	ENST00000344624.8:ENST00000511367.6:ENST00000513349.5:ENST00000512076.1	protein_coding	protein_coding	protein_coding	protein_coding	2	41	2	2.56618	2.569405	2.57263	0.0312297	0.0274185	0.136498	0.13151
chr9	97003778	97003878	4298891	0	-	0.35	(0.32,0.35]	chr9	395262	305	INTRON	INTRON	MFSD14C	ENSG00000196312.15	ENST00000647176.1:ENST00000645073.1:ENST00000637864.1:ENST00000652726.1:ENST00000637811.1:ENST00000650909.1	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript:transcribed_unprocessed_pseudogene	2	41	2	2.56618	2.569405	2.57263	0.0312297	0.0274185	0.136498	0.13151
chr5	28837740	28837840	2330127	0	+	0.32	(0.28,0.32]	chr5	225135	272	INTRON	INTRON	LINC02109	ENSG00000259786.7	ENST00000658190.1	lncRNA	lncRNA	lncRNA	lncRNA	9	163	2	2.3016	2.569255	2.83691	0.00123259	0.00108506	0.0326215	0.0303448
chr5	57175828	57175923	2358073	0	+	0.315789	(0.28,0.32]	chr5	227559	5	UTR5	UTR5:EXON_MRNA	GPBP1	ENSG00000062194.16	ENST00000424459.7:ENST00000514387.6:ENST00000506184.7	protein_coding	protein_coding	protein_coding	protein_coding	15	251	2	2.09374	2.569185	3.04463	9.32705e-4	1.83067e-4	0.0278746	0.0122816
chr12	122489861	122489961	5441877	0	-	0.32	(0.28,0.32]	chr12	520498	4	SS3_PROX	SS3_PROX:INTRON	ZCCHC8	ENSG00000033030.15	ENST00000672018.1:ENST00000633063.3:ENST00000543897.5:ENST00000536306.5:ENST00000536663.5:ENST00000540586.1	protein_coding	protein_coding	protein_coding	protein_coding	3	60	2	1.96376	2.569145	3.17453	0.0480066	0.00429297	0.153019	0.0599065
chr7	100882611	100882687	3365901	0	+	0.289474	(0.28,0.32]	chr7	315054	3	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SRRT	ENSG00000087087.20	ENST00000611405.5:ENST00000614484.4:ENST00000618262.4:ENST00000618411.4:ENST00000423692.5:ENST00000641476.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	100	2	2.29708	2.5690749999999998	2.84107	0.0195087	6.40806e-4	0.109483	0.0228915
chr1	1555960	1556060	360133	0	-	0.51	(0.476,0.515]	chr1	41847	96	INTRON	INTRON	SSU72	ENSG00000160075.12	ENST00000291386.4:ENST00000378725.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	35	2	2.40608	2.569065	2.73205	0.0425709	0.0159328	0.148082	0.109464
chr1	6623132	6623232	5513	0	+	0.49	(0.476,0.515]	chr1	1079	16	UTR3	UTR3:EXON_MRNA	PHF13	ENSG00000116273.6	ENST00000377648.5	protein_coding	protein_coding	protein_coding	protein_coding	2	35	2	2.40608	2.569065	2.73205	0.0425709	0.0159328	0.148082	0.109464
chr14	37069088	37069188	5876978	0	-	0.51	(0.476,0.515]	chr14	558013	1937	INTRON	INTRON	SLC25A21	ENSG00000183032.12	ENST00000331299.6:ENST00000555449.5:ENST00000557611.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	35	2	2.40608	2.569065	2.73205	0.0425709	0.0159328	0.148082	0.109464
chr19	46885999	46886099	7082485	0	+	0.48	(0.476,0.515]	chr19	708677	244	INTRON	INTRON	ARHGAP35	ENSG00000160007.19	ENST00000672722.1	protein_coding	protein_coding	protein_coding	protein_coding	2	35	2	2.40608	2.569065	2.73205	0.0425709	0.0159328	0.148082	0.109464
chr19	52079555	52079653	7205704	0	-	0.5	(0.476,0.515]	chr19	731297	21	INTRON	INTRON	ZNF432:ZNF841	ENSG00000256087.7:ENSG00000197608.12	ENST00000598446.1:ENST00000594440.6:ENST00000426391.6:ENST00000594295.5:ENST00000389534.8:ENST00000599430.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	35	2	2.40608	2.569065	2.73205	0.0425709	0.0159328	0.148082	0.109464
chr3	9650227	9650327	1359772	0	+	0.49	(0.476,0.515]	chr3	142837	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MTMR14	ENSG00000163719.20	ENST00000353332.9:ENST00000420925.5:ENST00000447144.5:ENST00000296003.9:ENST00000430020.5:ENST00000351233.9:ENST00000416864.5:ENST00000437997.1:ENST00000480578.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	35	2	2.40608	2.569065	2.73205	0.0425709	0.0159328	0.148082	0.109464
chr3	42792656	42792756	1671875	0	-	0.51	(0.476,0.515]	chr3	170894	61	INTRON	INTRON	ENSG00000280571:HIGD1A:ENSG00000235288	ENSG00000280571.2:ENSG00000181061.14:ENSG00000235288.3	ENST00000648550.1:ENST00000431549.4:ENST00000321331.12:ENST00000418900.6:ENST00000470543.1:ENST00000430190.5:ENST00000625589.2:ENST00000452906.3	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:nonsense_mediated_decay:lncRNA:processed_transcript	2	35	2	2.40608	2.569065	2.73205	0.0425709	0.0159328	0.148082	0.109464
chr8	127814032	127814132	3860238	0	+	0.48	(0.476,0.515]	chr8	355386	101	INTRON	INTRON	PVT1	ENSG00000249859.13	ENST00000667305.1:ENST00000690350.1:ENST00000653522.1:ENST00000664214.1:ENST00000664139.1:ENST00000661830.1:ENST00000657289.1:ENST00000504719.7:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000656880.1:ENST00000660200.1:ENST00000669132.1:ENST00000657211.1:ENST00000653845.1:ENST00000517525.2:ENST00000665856.1:ENST00000651587.1:ENST00000692980.1:ENST00000666353.1:ENST00000657183.1:ENST00000654324.1:ENST00000658556.1:ENST00000657693.1:ENST00000666080.1:ENST00000667539.1:ENST00000521951.1:ENST00000524165.6:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000664293.1:ENST00000657297.1:ENST00000662410.1:ENST00000670795.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000654091.1:ENST00000523328.6:ENST00000657356.1:ENST00000523427.2:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000662061.1:ENST00000667204.1:ENST00000656491.1:ENST00000667714.1:ENST00000654105.1:ENST00000665721.1:ENST00000518528.2:ENST00000669416.1:ENST00000660438.1:ENST00000661160.1:ENST00000659326.1:ENST00000665246.1:ENST00000657384.1:ENST00000666842.1:ENST00000517790.2:ENST00000522963.6:ENST00000654369.1:ENST00000661625.1:ENST00000657596.1:ENST00000664995.1:ENST00000656532.1:ENST00000656168.1:ENST00000661988.1:ENST00000657517.1:ENST00000670714.1:ENST00000669951.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000656693.1:ENST00000668123.1:ENST00000666776.1:ENST00000664299.1:ENST00000669272.1:ENST00000659912.1:ENST00000670532.1:ENST00000660896.1:ENST00000667149.1:ENST00000656396.1:ENST00000523068.2	lncRNA	lncRNA	lncRNA	lncRNA	2	35	2	2.40608	2.569065	2.73205	0.0425709	0.0159328	0.148082	0.109464
chr16	23498268	23498368	6464465	0	-	0.52	(0.515,0.57]	chr16	623900	21	INTRON	INTRON	GGA2	ENSG00000103365.15	ENST00000309859.8:ENST00000567468.5:ENST00000570111.5:ENST00000568799.1:ENST00000563494.5:ENST00000569300.5:ENST00000569189.2:ENST00000563047.1:ENST00000562944.5:ENST00000562117.1:ENST00000566547.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	79	2	2.24433	2.5690600000000003	2.89379	0.00725078	2.98479e-4	0.072984	0.0154922
chr16	70161842	70161941	6383938	0	+	0.40404	(0.378,0.408]	chr16	613564	51	UTR3	UTR3:EXON_MRNA	PDPR	ENSG00000090857.14	ENST00000288050.9	protein_coding	protein_coding	protein_coding	protein_coding	3	51	2	2.35103	2.56904	2.78705	0.014158	0.0135539	0.101363	0.0959618
chr19	14515060	14515158	7144758	0	-	0.387755	(0.378,0.408]	chr19	721445	4	UTR3	UTR3:EXON_MRNA	DNAJB1	ENSG00000132002.9	ENST00000594099.6:ENST00000596075.2:ENST00000678009.1:ENST00000677848.1:ENST00000596853.6:ENST00000254322.3:ENST00000676577.1:ENST00000676515.1:ENST00000598692.2:ENST00000677762.1:ENST00000678338.1:ENST00000595139.2:ENST00000598235.2:ENST00000601533.6:ENST00000677204.1:ENST00000679223.1:ENST00000676982.1:ENST00000678098.1	protein_coding	protein_coding	protein_coding	protein_coding	3	51	2	2.35103	2.56904	2.78705	0.014158	0.0135539	0.101363	0.0959618
chr15	87660878	87660978	6256163	0	-	0.5	(0.476,0.515]	chr15	596826	1175	INTRON	INTRON	ENSG00000259560	ENSG00000259560.2	ENST00000665121.1:ENST00000560439.1	lncRNA	lncRNA	lncRNA	lncRNA	4	58	2	1.68092	2.5690150000000003	3.45711	0.0474026	0.00140905	0.169265	0.0340865
chr4	48671458	48671558	2138531	0	-	0.48	(0.476,0.515]	chr4	210994	177	INTRON	INTRON	FRYL	ENSG00000075539.15	ENST00000358350.9:ENST00000503238.6:ENST00000507711.5:ENST00000505759.1:ENST00000502520.5:ENST00000505437.5:ENST00000514783.5:ENST00000509886.5:ENST00000515684.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	35	2	2.48527	2.568975	2.65268	0.03496	0.0201975	0.13747500000000001	0.121243
chr4	86953862	86953962	1993984	0	+	0.51	(0.476,0.515]	chr4	199032	49	INTRON	INTRON	AFF1	ENSG00000172493.23	ENST00000504956.5:ENST00000395146.9:ENST00000507468.5:ENST00000674009.1:ENST00000503477.5:ENST00000511996.5:ENST00000511442.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	35	2	2.48527	2.568975	2.65268	0.03496	0.0201975	0.13747500000000001	0.121243
chr5	141927172	141927268	2505029	0	+	0.479167	(0.476,0.515]	chr5	239701	13	INTRON	INTRON	DELE1	ENSG00000081791.9	ENST00000194118.8:ENST00000432126.7:ENST00000508751.1	protein_coding	protein_coding	protein_coding	protein_coding	2	35	2	2.48527	2.568975	2.65268	0.03496	0.0201975	0.13747500000000001	0.121243
chr5	134961760	134961858	2492281	0	+	0.540816	(0.515,0.57]	chr5	238098	12	UTR3	UTR3:EXON_MRNA:INTRON	PCBD2	ENSG00000132570.15	ENST00000512783.5:ENST00000254908.11:ENST00000504352.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	79	2	2.496	2.568855	2.64171	0.00225531	0.00130576	0.0436331	0.0331539
chr1	3635479	3635572	363538	0	-	0.526882	(0.515,0.57]	chr1	42550	3	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	WRAP73	ENSG00000116213.16	ENST00000378322.7:ENST00000270708.12:ENST00000471223.1:ENST00000424367.5:ENST00000497940.5:ENST00000465916.5:ENST00000419924.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	41	2	1.9459	2.56884	3.19178	0.0429089	0.00289534	0.148082	0.0494641
chr4	82830143	82830240	2179459	0	-	0.515464	(0.515,0.57]	chr4	214261	7	INTRON	INTRON	SEC31A	ENSG00000138674.17	ENST00000395310.7:ENST00000513858.5:ENST00000348405.8:ENST00000503937.5:ENST00000448323.5:ENST00000311785.11:ENST00000509142.5:ENST00000443462.6:ENST00000500777.6:ENST00000505472.5:ENST00000355196.6:ENST00000508502.5:ENST00000264405.9:ENST00000505984.5:ENST00000511338.1:ENST00000514362.5:ENST00000515749.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	41	2	1.9459	2.56884	3.19178	0.0429089	0.00289534	0.148082	0.0494641
chr7	74182357	74182454	3332306	0	+	0.525773	(0.515,0.57]	chr7	310032	26	INTRON	INTRON	EIF4H	ENSG00000106682.16	ENST00000678438.1:ENST00000489484.5:ENST00000677998.1:ENST00000495187.2:ENST00000265753.13:ENST00000353999.6:ENST00000677570.1:ENST00000677681.1:ENST00000678815.1:ENST00000679266.1:ENST00000679287.1:ENST00000479338.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	41	2	1.9459	2.56884	3.19178	0.0429089	0.00289534	0.148082	0.0494641
chr11	75405059	75405156	4831886	0	+	0.350515	(0.35,0.378]	chr11	450864	3	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPS3	ENSG00000149273.15	ENST00000531188.6:ENST00000528439.5:ENST00000530721.5:ENST00000422465.6:ENST00000532872.5:ENST00000278572.10:ENST00000527446.5:ENST00000534440.5:ENST00000526248.5:ENST00000525690.1:ENST00000525933.1:ENST00000530170.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	133	2	2.44765	2.568825	2.69	0.00116381	0.00107271	0.0312127	0.0300133
chr4	126467941	126468041	2235388	0	-	0.28	[0,0.28]	chr4	219023	24	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	5	94	2	1.9865	2.56876	3.15102	0.0129046	0.00767596	0.0990564	0.0753665
chr2	111834692	111834782	1214368	0	-	0.366667	(0.35,0.378]	chr2	129139	2	CDS	CDS:EXON_MRNA	ANAPC1	ENSG00000153107.13	ENST00000427997.5:ENST00000341068.8	protein_coding	protein_coding	protein_coding	protein_coding	4	72	2	2.34278	2.5687499999999996	2.79472	0.0129593	0.00303911	0.0991015	0.0493883
chr9	135934307	135934405	4372285	0	-	0.438776	(0.408,0.44]	chr9	402502	4	INTRON	INTRON	UBAC1	ENSG00000130560.9	ENST00000371756.4:ENST00000489050.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	107	2	1.65543	2.568735	3.48204	0.0193369	6.71132e-5	0.108861	0.00678102
chrX	48913655	48913750	7815642	0	-	0.463158	(0.44,0.476]	chrX	796797	6	UTR3	UTR3:EXON_MRNA	PIM2	ENSG00000102096.9	ENST00000376509.4	protein_coding	protein_coding	protein_coding	protein_coding	17	246	2	2.251	2.5687249999999997	2.88645	2.99867e-4	3.14e-5	0.0155054	0.00467454
chr18	14120593	14120693	6952507	0	-	0.29	(0.28,0.32]	chr18	687741	138	INTRON	INTRON	ZNF519	ENSG00000175322.12	ENST00000592345.5:ENST00000589203.5:ENST00000587419.5:ENST00000592049.5:ENST00000592411.5:ENST00000591393.1:ENST00000590202.3:ENST00000589498.5:ENST00000588435.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	100	2	2.14534	2.5686999999999998	2.99206	0.0117054	0.0017801	0.0962115	0.0379201
chr15	28240848	28240946	6123225	0	-	0.336735	(0.32,0.35]	chr15	583285	17	INTRON	INTRON	HERC2	ENSG00000128731.18	ENST00000261609.13	protein_coding	protein_coding	protein_coding	protein_coding	3	59	2	2.4961	2.568695	2.64129	0.0222819	0.00967886	0.124303	0.0828038
chr21	6990221	6990320	7425922	0	-	0.323232	(0.32,0.35]	chr21	757520	32	INTRON	INTRON	ENSG00000280018	ENSG00000280018.4	ENST00000623165.3	lncRNA	lncRNA	lncRNA	lncRNA	8	126	2	1.74705	2.56869	3.39033	0.0128435	2.63309e-4	0.0990564	0.0149561
chr9	137629332	137629431	4223575	0	+	0.535354	(0.515,0.57]	chr9	388152	89	INTRON	INTRON	EHMT1	ENSG00000181090.21	ENST00000462484.5:ENST00000371394.6:ENST00000630754.2:ENST00000460843.6:ENST00000626216.2:ENST00000637593.1:ENST00000629335.2:ENST00000637335.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	41	2	2.15051	2.5686400000000003	2.98677	0.0238113	0.00632549	0.118889	0.0722266
chr11	47235604	47235701	4787955	0	+	0.402062	(0.378,0.408]	chr11	442882	3	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	DDB2	ENSG00000134574.12	ENST00000256996.9:ENST00000378601.7:ENST00000612309.4:ENST00000617022.4:ENST00000616278.4:ENST00000378600.7:ENST00000378603.7:ENST00000617847.4:ENST00000614394.1:ENST00000620515.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	101	2	2.01851	2.568605	3.1187	0.00559022	7.19674e-4	0.0678837	0.0246343
chr3	185932152	185932252	1886545	0	-	0.33	(0.32,0.35]	chr3	188640	3	SS3_PROX	SS3_PROX:INTRON	TRA2B	ENSG00000136527.19	ENST00000453386.7:ENST00000487615.5:ENST00000456380.5:ENST00000382191.4:ENST00000465245.1:ENST00000485530.5:ENST00000471134.1:ENST00000480461.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	100	2	1.25832	2.56856	3.8788	0.0563972	3.3703e-4	0.184423	0.0170609
chr1	193128438	193128538	284672	0	+	0.51	(0.476,0.515]	chr1	32752	3	SS5_PROX	SS5_PROX:INTRON	CDC73	ENSG00000134371.14	ENST00000649895.1:ENST00000643006.1:ENST00000367435.5:ENST00000650197.1:ENST00000643784.1:ENST00000648071.1:ENST00000635846.1:ENST00000649606.1:ENST00000647662.1:ENST00000482484.1:ENST00000649706.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	57	2	1.80284	2.5685	3.33416	0.033161	0.00230489	0.145899	0.0428247
chr1	175988791	175988886	589511	0	-	0.4	(0.378,0.408]	chr1	70882	5	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	COP1	ENSG00000143207.21	ENST00000367669.8:ENST00000367667.5:ENST00000461830.6:ENST00000367666.5:ENST00000649803.1:ENST00000308769.12	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	129	2	1.69145	2.56848	3.44551	0.0112711	8.68398e-5	0.0884796	0.00783027
chr1	150295948	150296048	221210	0	+	0.5	(0.476,0.515]	chr1	24942	11	INTRON	INTRON	MRPS21	ENSG00000266472.6	ENST00000614145.5:ENST00000581066.2	protein_coding	protein_coding	protein_coding	protein_coding	4	67	2	2.19809	2.56834	2.93859	0.020317	0.00143107	0.121522	0.0340925
chr16	84134555	84134653	6532346	0	-	0.44898	(0.44,0.476]	chr16	632976	29	INTRON	INTRON	HSDL1	ENSG00000103160.12	ENST00000219439.9:ENST00000434463.7:ENST00000568857.5:ENST00000562224.1:ENST00000567294.5:ENST00000564998.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	36	2	2.39604	2.5683350000000003	2.74063	0.0404291	0.0176095	0.161534	0.105143
chr17	80350896	80350992	6683996	0	+	0.229167	[0,0.28]	chr17	653120	1	INTRON	INTRON	RNF213	ENSG00000173821.20	ENST00000582970.6:ENST00000508628.6	protein_coding	protein_coding	protein_coding	protein_coding	2	50	2	2.38757	2.56829	2.74901	0.0552962	0.0188843	0.165463	0.118148
chr2	15344117	15344217	1070959	0	-	0.27	[0,0.28]	chr2	114279	130	INTRON	INTRON	NBAS	ENSG00000151779.13	ENST00000281513.10:ENST00000442506.5	protein_coding	protein_coding	protein_coding	protein_coding	2	50	2	2.38757	2.56829	2.74901	0.0552962	0.0188843	0.165463	0.118148
chr3	197219072	197219172	1902712	0	-	0.43	(0.408,0.44]	chr3	190649	241	INTRON	INTRON	DLG1	ENSG00000075711.21	ENST00000667157.1:ENST00000346964.6:ENST00000656428.1:ENST00000663148.1:ENST00000655488.1:ENST00000357674.9:ENST00000671185.1:ENST00000658701.1:ENST00000667104.1:ENST00000661336.1:ENST00000669565.1:ENST00000670455.1:ENST00000656087.1:ENST00000670366.1:ENST00000653583.1:ENST00000661453.1:ENST00000665728.1:ENST00000664564.1:ENST00000660432.1:ENST00000660898.1:ENST00000657381.1:ENST00000659221.1:ENST00000654737.1:ENST00000669332.1:ENST00000659716.1:ENST00000664991.1:ENST00000419354.5:ENST00000661440.1:ENST00000667971.1:ENST00000670935.1:ENST00000668578.1:ENST00000666007.1:ENST00000661229.1:ENST00000661013.1:ENST00000436682.6:ENST00000662727.1:ENST00000422288.6:ENST00000448528.6:ENST00000656944.1:ENST00000392382.6:ENST00000450955.5:ENST00000658155.1:ENST00000669714.1:ENST00000654733.1:ENST00000469073.2:ENST00000419227.5:ENST00000392381.7:ENST00000471733.5:ENST00000419553.6:ENST00000661808.1:ENST00000453607.5:ENST00000456699.6:ENST00000392380.6:ENST00000485409.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	37	2	2.2957	2.568235	2.84077	0.0516458	0.0132196	0.176696	0.0940535
chr19	40281323	40281421	7183713	0	-	0.44898	(0.44,0.476]	chr19	726536	6	INTRON	INTRON	AKT2	ENSG00000105221.18	ENST00000392038.7:ENST00000424901.5:ENST00000391844.8:ENST00000584288.5:ENST00000579047.5:ENST00000596634.5:ENST00000452077.5:ENST00000578123.5:ENST00000423127.5:ENST00000358335.9:ENST00000456441.5:ENST00000583859.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	162	2	2.46551	2.568115	2.67072	3.60069e-4	3.07975e-4	0.0169207	0.0161519
chr8	31062904	31063003	3728226	0	+	0.494949	(0.476,0.515]	chr8	346535	33	INTRON	INTRON	WRN	ENSG00000165392.11	ENST00000650667.1:ENST00000298139.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	63	2	2.45598	2.568105	2.68023	0.00945755	0.00353671	0.0817766	0.0546236
chr7	50726319	50726411	3532000	0	-	0.521739	(0.515,0.57]	chr7	329484	3	SS3_PROX	SS3_PROX:INTRON	GRB10	ENSG00000106070.20	ENST00000335866.7:ENST00000398812.6:ENST00000401949.6:ENST00000402578.5:ENST00000644769.1:ENST00000403097.6:ENST00000644879.1:ENST00000406641.5:ENST00000402497.6:ENST00000357271.9:ENST00000643299.1:ENST00000407526.6:ENST00000645075.2:ENST00000439044.7:ENST00000644716.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	56	2	1.9888	2.56805	3.1473	0.00963364	0.00397184	0.086971	0.0549214
chr11	86038300	86038400	5014535	0	-	0.37	(0.35,0.378]	chr11	473022	63	INTRON	INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000630913.2:ENST00000528398.5:ENST00000356360.9:ENST00000534412.5:ENST00000531558.1:ENST00000531930.5:ENST00000532041.5:ENST00000525162.5:ENST00000528256.1:ENST00000528411.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	31	440	2	2.34673	2.56801	2.78929	5.59898e-5	3.0905e-5	0.00654893	0.00443703
chr16	18807507	18807605	6456826	0	-	0.336735	(0.32,0.35]	chr16	622573	28	UTR3	UTR3:EXON_MRNA	SMG1	ENSG00000157106.18	ENST00000446231.7	protein_coding	protein_coding	protein_coding	protein_coding	5	76	2	2.05666	2.568005	3.07935	0.00840213	0.00724137	0.0824581	0.0729826
chr7	155762510	155762610	3453093	0	+	0.38	(0.378,0.408]	chr7	322730	155	INTRON	INTRON	RBM33	ENSG00000184863.11	ENST00000401878.8:ENST00000392761.3:ENST00000438356.1:ENST00000341148.7	protein_coding	protein_coding	protein_coding	protein_coding	4	66	2	2.47752	2.567835	2.65815	0.0092831	0.00391167	0.0817766	0.0569957
chr18	13028664	13028763	6876952	0	+	0.555556	(0.515,0.57]	chr18	681391	91	INTRON	INTRON	CEP192	ENSG00000101639.19	ENST00000325971.12:ENST00000506447.5:ENST00000589596.5:ENST00000513432.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	32	2	2.23241	2.56776	2.90311	0.0581268	0.0094233	0.188651	0.0817766
chr18	26090223	26090311	6959739	0	-	0.545455	(0.515,0.57]	chr18	688518	2	SS5_PROX	SS5_PROX:INTRON	SS18	ENSG00000141380.14	ENST00000415083.7:ENST00000542420.6:ENST00000579640.5:ENST00000269138.9:ENST00000269137.11:ENST00000585121.5:ENST00000539244.6:ENST00000585241.5:ENST00000578954.5:ENST00000579061.5:ENST00000577636.5:ENST00000578700.5:ENST00000582792.5:ENST00000577572.5:ENST00000582448.5:ENST00000581570.5:ENST00000580751.5:ENST00000580642.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	32	2	2.23241	2.56776	2.90311	0.0581268	0.0094233	0.188651	0.0817766
chr2	135875275	135875371	1233880	0	-	0.541667	(0.515,0.57]	chr2	131345	21	INTRON	INTRON	MCM6	ENSG00000076003.5	ENST00000264156.3	protein_coding	protein_coding	protein_coding	protein_coding	2	32	2	2.23241	2.56776	2.90311	0.0581268	0.0094233	0.188651	0.0817766
chr22	46269689	46269789	7533213	0	+	0.53	(0.515,0.57]	chr22	770202	4	SS5_PROX	SS5_PROX:INTRON	TTC38	ENSG00000075234.17	ENST00000417709.5:ENST00000381031.8:ENST00000421359.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	32	2	2.23241	2.56776	2.90311	0.0581268	0.0094233	0.188651	0.0817766
chr3	197625120	197625220	1904015	0	-	0.53	(0.515,0.57]	chr3	190768	4	SS3_PROX	SS3_PROX:INTRON	SDHAP4	ENSG00000214135.9	ENST00000685600.1:ENST00000688268.1:ENST00000689716.1:ENST00000689038.1:ENST00000414207.5:ENST00000686003.1:ENST00000418868.6:ENST00000685331.1:ENST00000690701.1:ENST00000685536.1:ENST00000449003.6:ENST00000440535.5:ENST00000454517.1:ENST00000437008.5	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript:transcribed_unprocessed_pseudogene	2	32	2	2.23241	2.56776	2.90311	0.0581268	0.0094233	0.188651	0.0817766
chr1	246885880	246885980	681479	0	-	0.51	(0.476,0.515]	chr1	79934	2	SS3_PROX	SS3_PROX:INTRON	AHCTF1	ENSG00000153207.16	ENST00000648844.2:ENST00000326225.3:ENST00000366508.5:ENST00000470300.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	65	2	1.63962	2.567745	3.49587	0.0346854	0.00120011	0.148144	0.0315806
chr18	264592	264662	6939007	0	-	0.4	(0.378,0.408]	chr18	686317	1	INTRON	INTRON	THOC1	ENSG00000079134.13	ENST00000261600.11:ENST00000579232.5:ENST00000580038.5:ENST00000631280.2:ENST00000582313.5:ENST00000581269.5:ENST00000581116.1:ENST00000578224.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	111	2	2.2403	2.5677399999999997	2.89518	0.00190046	0.00125943	0.0393643	0.03295
chr7	39956716	39956816	3310686	0	+	0.45	(0.44,0.476]	chr7	307478	39	INTRON	INTRON	CDK13	ENSG00000065883.17	ENST00000340829.10:ENST00000181839.10:ENST00000613626.4:ENST00000646039.1:ENST00000643859.1	protein_coding	protein_coding	protein_coding	protein_coding	5	65	2	1.70242	2.567735	3.43305	0.0282713	0.00159668	0.137721	0.0364566
chr9	131493808	131493904	4218003	0	+	0.458333	(0.44,0.476]	chr9	386879	12	INTRON	INTRON	PRRC2B	ENSG00000288701.1	ENST00000684596.1:ENST00000683519.1:ENST00000682501.1:ENST00000682662.1:ENST00000683161.1:ENST00000684112.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	65	2	1.70242	2.567735	3.43305	0.0282713	0.00159668	0.137721	0.0364566
chr2	169614824	169614924	906787	0	+	0.23	[0,0.28]	chr2	100060	1	SS5_PROX	SS5_PROX:INTRON	PPIG	ENSG00000138398.17	ENST00000678088.1:ENST00000677392.1:ENST00000433207.6:ENST00000679324.1:ENST00000414307.6:ENST00000676508.1:ENST00000260970.8:ENST00000678695.1:ENST00000409714.7:ENST00000530152.5:ENST00000677750.1:ENST00000678721.1:ENST00000462903.6:ENST00000676756.1:ENST00000679107.1:ENST00000678499.1:ENST00000678638.1:ENST00000448752.7:ENST00000417938.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	84	2	2.40162	2.56773	2.73384	0.0246308	0.00511828	0.12011	0.064713
chr1	120161523	120161622	533684	0	-	0.484848	(0.476,0.515]	chr1	62774	6	INTRON	INTRON	SEC22B	ENSG00000265808.4	ENST00000578049.4	protein_coding	protein_coding	protein_coding	protein_coding	6	91	2	2.44441	2.5677250000000003	2.69104	0.0036718	9.94264e-4	0.0535094	0.0290397
chr22	18563623	18563722	7550988	0	-	0.40404	(0.378,0.408]	chr22	771829	107	INTRON	INTRON	PI4KAP1	ENSG00000274602.5	ENST00000612500.4:ENST00000611748.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	5	80	2	2.2708	2.56772	2.86464	0.00646593	0.00215581	0.073179	0.0417866
chr12	98525889	98525989	5198722	0	+	0.3	(0.28,0.32]	chr12	491795	90	INTRON	INTRON	TMPO	ENSG00000120802.14	ENST00000548911.1:ENST00000556029.6:ENST00000343315.9:ENST00000266732.8:ENST00000393053.6:ENST00000546828.6:ENST00000261210.9:ENST00000549938.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	62	2	2.33381	2.56769	2.80157	0.0174951	0.0147132	0.106558	0.104863
chr3	12591432	12591523	1616676	0	-	0.461538	(0.44,0.476]	chr3	166901	6	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RAF1	ENSG00000132155.14	ENST00000688543.1:ENST00000685348.1:ENST00000251849.9:ENST00000442415.7:ENST00000690585.1:ENST00000691888.1:ENST00000688444.1:ENST00000692093.1:ENST00000691724.1:ENST00000423275.6:ENST00000687326.1:ENST00000688803.1:ENST00000689876.1:ENST00000686455.1:ENST00000684903.1:ENST00000692830.1:ENST00000693312.1:ENST00000690460.1:ENST00000692773.1:ENST00000688625.1:ENST00000692069.1:ENST00000693664.1:ENST00000686762.1:ENST00000692311.1:ENST00000692558.1:ENST00000691779.1:ENST00000685738.1:ENST00000690397.1:ENST00000687923.1:ENST00000688269.1:ENST00000693705.1:ENST00000689097.1:ENST00000691899.1:ENST00000689914.1:ENST00000690625.1:ENST00000432427.3:ENST00000689389.1:ENST00000687257.1:ENST00000475353.2:ENST00000686409.1:ENST00000685653.1:ENST00000689540.1:ENST00000691396.1:ENST00000687505.1:ENST00000685437.1:ENST00000689418.1:ENST00000688914.1:ENST00000465826.6:ENST00000688326.1:ENST00000494557.2:ENST00000687940.1:ENST00000689481.1:ENST00000693069.1:ENST00000491290.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	47	2	2.27304	2.567675	2.86231	0.0158915	0.012214	0.109464	0.0910127
chr2	151425431	151425529	893366	0	+	0.326531	(0.32,0.35]	chr2	98908	18	INTRON	INTRON	RIF1	ENSG00000080345.18	ENST00000453091.6:ENST00000428287.6:ENST00000444746.7:ENST00000243326.9:ENST00000414861.6:ENST00000430328.6	protein_coding	protein_coding	protein_coding	protein_coding	5	89	2	2.4722	2.56761	2.66302	0.00542632	0.00307237	0.0645052	0.0509893
chr1	113948548	113948648	191989	0	+	0.31	(0.28,0.32]	chr1	21149	67	INTRON	INTRON	HIPK1	ENSG00000163349.22	ENST00000426820.7:ENST00000626993.2:ENST00000369559.8:ENST00000369558.5:ENST00000369561.8:ENST00000369555.6	protein_coding	protein_coding	protein_coding	protein_coding	6	119	2	2.12073	2.5674900000000003	3.01425	0.0157269	2.70987e-4	0.101453	0.0146168
chr19	29978071	29978170	7047914	0	+	0.252525	[0,0.28]	chr19	702669	65	INTRON	INTRON	URI1	ENSG00000105176.18	ENST00000360605.8:ENST00000570564.5:ENST00000574233.5:ENST00000392271.6:ENST00000574110.5:ENST00000574666.5:ENST00000576442.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	50	2	2.33055	2.5672550000000003	2.80396	0.062338	0.0161429	0.175343	0.109464
chr2	53945821	53945921	1120323	0	-	0.22	[0,0.28]	chr2	120090	32	INTRON	INTRON	PSME4	ENSG00000068878.15	ENST00000404125.6:ENST00000389993.7:ENST00000481518.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	50	2	2.33055	2.5672550000000003	2.80396	0.062338	0.0161429	0.175343	0.109464
chr20	32370693	32370790	7255947	0	+	0.268041	[0,0.28]	chr20	737066	12	INTRON	INTRON	ASXL1	ENSG00000171456.21	ENST00000651418.1:ENST00000375687.10:ENST00000613218.4:ENST00000646367.1:ENST00000644587.1:ENST00000620121.4:ENST00000645337.1:ENST00000649901.1:ENST00000646985.1:ENST00000645035.1:ENST00000497249.6:ENST00000643168.1:ENST00000375689.5:ENST00000306058.9:ENST00000555343.2:ENST00000645688.1:ENST00000642676.1:ENST00000470145.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	50	2	2.33055	2.5672550000000003	2.80396	0.062338	0.0161429	0.175343	0.109464
chr11	759557	759621	4720460	0	+	0.359375	(0.35,0.378]	chr11	436406	1	INTRON	INTRON	TALDO1	ENSG00000177156.11	ENST00000528070.5:ENST00000528097.5:ENST00000530440.1:ENST00000319006.8:ENST00000530119.5:ENST00000533796.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	52	2	2.14264	2.5671850000000003	2.99173	0.0274795	0.00713365	0.123904	0.0756118
chr1	12436579	12436679	30375	0	+	0.24	[0,0.28]	chr1	3762	194	INTRON	INTRON	VPS13D	ENSG00000048707.15	ENST00000620676.6:ENST00000613099.4:ENST00000011700.10:ENST00000646411.1:ENST00000543710.5:ENST00000645371.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	50	2	2.44242	2.567145	2.69187	0.0491024	0.0221271	0.155269	0.123903
chr2	15531143	15531243	1072860	0	-	0.36	(0.35,0.378]	chr2	114441	194	INTRON	INTRON	NBAS	ENSG00000151779.13	ENST00000281513.10	protein_coding	protein_coding	protein_coding	protein_coding	7	124	2	1.99351	2.567135	3.14076	0.020841	3.17876e-5	0.111648	0.00449975
chr3	197674818	197674917	1904130	0	-	0.383838	(0.378,0.408]	chr3	190782	61	UTR3	UTR3:EXON_MRNA	RUBCN	ENSG00000145016.16	ENST00000296343.10:ENST00000273582.9:ENST00000413360.5	protein_coding	protein_coding	protein_coding	protein_coding	14	219	2	2.55918	2.5671299999999997	2.57508	2.19066e-4	1.60502e-4	0.0129737	0.0116064
chr16	29921177	29921274	6471974	0	-	0.381443	(0.378,0.408]	chr16	625365	17	UTR3	UTR3:EXON_MRNA:INTRON	KCTD13	ENSG00000174943.11	ENST00000308768.9:ENST00000568000.6:ENST00000566842.5:ENST00000568995.1:ENST00000563264.1:ENST00000566413.1:ENST00000561540.2:ENST00000648037.1:ENST00000567795.3:ENST00000649581.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	60	2	1.90812	2.567055	3.22599	0.0264295	0.00288652	0.122506	0.0494641
chr7	6035225	6035324	3475995	0	-	0.50505	(0.476,0.515]	chr7	325180	58	INTRON	INTRON	EIF2AK1	ENSG00000086232.13	ENST00000199389.11	protein_coding	protein_coding	protein_coding	protein_coding	6	92	2	2.21025	2.567055	2.92386	0.00913757	3.01132e-4	0.0812335	0.0155054
chr11	33735881	33735981	4941334	0	-	0.47	(0.44,0.476]	chr11	462946	1	SS5_PROX	SS5_PROX:INTRON	CD59	ENSG00000085063.17	ENST00000642928.2:ENST00000651785.1:ENST00000395850.9:ENST00000652086.1:ENST00000426650.7:ENST00000533403.6:ENST00000351554.8:ENST00000527577.5:ENST00000643183.1:ENST00000528700.2	protein_coding	protein_coding	protein_coding	protein_coding	3	48	2	2.00609	2.56704	3.12799	0.0360127	0.0050635	0.152355	0.0621733
chr7	152036614	152036714	3449620	0	+	0.42	(0.408,0.44]	chr7	322435	85	INTRON	INTRON	GALNT11	ENSG00000178234.13	ENST00000430044.7:ENST00000482812.1:ENST00000431668.1:ENST00000446096.5:ENST00000447778.5:ENST00000423337.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	64	2	2.26792	2.5670200000000003	2.86612	0.0179973	0.00157924	0.106756	0.0366789
chr6	158563928	158564028	3021637	0	+	0.5	(0.476,0.515]	chr6	281792	33	INTRON	INTRON	TMEM181	ENSG00000146433.10	ENST00000367090.4:ENST00000684151.1	protein_coding	protein_coding	protein_coding	protein_coding	11	157	2	2.23459	2.56702	2.89945	0.00114776	1.1863e-4	0.0308671	0.00930884
chr2	107709911	107710011	1205648	0	-	0.39	(0.378,0.408]	chr2	128526	62	INTRON	INTRON	LINC01885:ENSG00000286769	ENSG00000237880.2:ENSG00000286769.1	ENST00000654481.1:ENST00000669817.1	lncRNA	lncRNA	lncRNA	lncRNA	6	75	2	1.58985	2.566955	3.54406	0.0290335	0.00110718	0.141186	0.0306086
chr19	10357384	10357463	7135664	0	-	0.531646	(0.515,0.57]	chr19	719448	1	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	TYK2	ENSG00000105397.14	ENST00000264818.10:ENST00000525621.6:ENST00000524462.5:ENST00000529412.1:ENST00000529370.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	55	2	2.21273	2.5669399999999998	2.92115	0.0196151	0.00110258	0.109486	0.03038
chr7	16268953	16269050	3286477	0	+	0.360825	(0.35,0.378]	chr7	305233	2	EXON_LNCRNA	EXON_LNCRNA	CRPPA-AS1	ENSG00000229688.8	ENST00000663812.1:ENST00000438573.5:ENST00000655000.1:ENST00000457112.1	lncRNA	lncRNA	lncRNA	lncRNA	4	63	2	1.91706	2.566915	3.21677	0.026412	0.00313804	0.122506	0.0514466
chr3	47754668	47754768	1684804	0	-	0.39	(0.378,0.408]	chr3	172116	83	INTRON	INTRON	SMARCC1	ENSG00000173473.11	ENST00000254480.10:ENST00000425518.5:ENST00000454240.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	73	2	2.46596	2.566905	2.66785	0.0224639	0.00125753	0.11692	0.03295
chr2	181029814	181029913	936464	0	+	0.444444	(0.44,0.476]	chr2	102627	399	INTRON	INTRON	UBE2E3	ENSG00000170035.16	ENST00000602303.5:ENST00000602959.5:ENST00000602479.5:ENST00000392415.6:ENST00000602291.5:ENST00000410062.9:ENST00000602499.5:ENST00000602710.5:ENST00000602762.5:ENST00000602888.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	9	114	2	2.0432	2.566795	3.09039	0.00226364	7.4601e-4	0.0437013	0.0251072
chr10	3120939	3121038	4382082	0	+	0.262626	[0,0.28]	chr10	404146	5	INTRON	INTRON	PFKP	ENSG00000067057.18	ENST00000381125.9:ENST00000381075.7:ENST00000678206.1:ENST00000678089.1:ENST00000676796.1:ENST00000415005.6:ENST00000413079.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	135	2	2.22889	2.56669	2.90449	0.0128832	6.06161e-4	0.0926667	0.0223951
chr1	224972600	224972699	322797	0	+	0.494949	(0.476,0.515]	chr1	37160	29	INTRON	INTRON	DNAH14	ENSG00000185842.16	ENST00000445597.6:ENST00000430092.5:ENST00000400952.7:ENST00000682510.1:ENST00000366849.5:ENST00000439375.6	protein_coding	protein_coding	protein_coding	protein_coding	4	63	2	2.49941	2.566685	2.63396	0.00811651	0.00426634	0.0766625	0.0596808
chr22	19462614	19462713	7554728	0	-	0.444444	(0.44,0.476]	chr22	772371	41	INTRON	INTRON	UFD1	ENSG00000070010.19	ENST00000263202.15:ENST00000399523.5:ENST00000459854.5:ENST00000466373.1:ENST00000447868.5:ENST00000421968.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	76	2	2.53696	2.56664	2.59632	0.00579248	0.00204135	0.0662959	0.041855
chr12	64446617	64446716	5153332	0	+	0.30303	(0.28,0.32]	chr12	487845	11	INTRON	INTRON	XPOT	ENSG00000184575.12	ENST00000332707.10	protein_coding	protein_coding	protein_coding	protein_coding	4	73	2	2.35314	2.5665899999999997	2.78004	0.0193244	0.00539714	0.108861	0.066545000000000007
chr4	68313511	68313609	2154502	0	-	0.306122	(0.28,0.32]	chr4	212203	33	UTR3	UTR3:EXON_MRNA	YTHDC1	ENSG00000083896.13	ENST00000344157.9:ENST00000355665.7:ENST00000579690.5	protein_coding	protein_coding	protein_coding	protein_coding	8	140	2	2.41879	2.56647	2.71415	0.005045	6.86623e-4	0.0621586	0.0238954
chr1	11024119	11024218	24683	0	+	0.323232	(0.32,0.35]	chr1	2610	9	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	TARDBP	ENSG00000120948.19	ENST00000639599.1:ENST00000240185.8:ENST00000614757.4:ENST00000473869.5:ENST00000315091.7:ENST00000611963.4:ENST00000619555.4:ENST00000614494.1:ENST00000611136.4:ENST00000477447.6:ENST00000612542.1:ENST00000620505.1:ENST00000621573.1:ENST00000611008.4:ENST00000613177.1:ENST00000622108.1:ENST00000496840.1:ENST00000617757.1:ENST00000480464.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	66	2	2.18777	2.5664350000000002	2.9451	0.011051	0.00951422	0.0873897	0.0863913
chr7	111327184	111327284	3621754	0	-	0.42	(0.408,0.44]	chr7	337093	3633	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	49	2	1.93243	2.5663850000000004	3.20034	0.0441194	0.00398025	0.162255	0.0549214
chr18	9111457	9111557	6868681	0	+	0.59	(0.57,1]	chr18	680510	61	INTRON	INTRON	NDUFV2	ENSG00000178127.13	ENST00000577703.1:ENST00000318388.11:ENST00000583375.5:ENST00000400033.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	26	2	1.9042	2.5663799999999997	3.22856	0.0476976	0.00205928	0.153019	0.0420839
chr1	65291977	65292077	135913	0	+	0.34	(0.32,0.35]	chr1	15346	267	INTRON	INTRON	DNAJC6	ENSG00000116675.16	ENST00000463018.5:ENST00000494710.6:ENST00000263441.11:ENST00000395325.7:ENST00000483402.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	90	2	2.2643	2.5663299999999998	2.86836	0.00712852	0.00250845	0.0756118	0.0446195
chr17	30776501	30776600	6590261	0	+	0.292929	(0.28,0.32]	chr17	640892	2	INTRON	INTRON	SUZ12P1	ENSG00000264538.7	ENST00000582329.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	16	263	2	1.69626	2.566295	3.43633	0.00853757	8.07823e-6	0.0780043	0.00204092
chr1	205734435	205734535	623732	0	-	0.32	(0.28,0.32]	chr1	74198	32	INTRON	INTRON	NUCKS1	ENSG00000069275.13	ENST00000367142.5	protein_coding	protein_coding	protein_coding	protein_coding	3	60	2	1.86684	2.566175	3.26551	0.0605813	0.0030714	0.171122	0.0509893
chr16	11888442	11888538	6446124	0	-	0.5	(0.476,0.515]	chr16	621098	3	INTRON	INTRON	GSPT1	ENSG00000103342.13	ENST00000434724.7:ENST00000439887.6:ENST00000565267.5:ENST00000563468.5:ENST00000420576.6:ENST00000568849.5	protein_coding	protein_coding	protein_coding	protein_coding	4	57	2	1.88582	2.5660600000000002	3.2463	0.0273268	0.00262374	0.123904	0.0470772
chrX	44896585	44896685	7648836	0	+	0.34	(0.32,0.35]	chrX	782726	222	INTRON	INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000675440.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000621147.5:ENST00000475233.1:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	90	2	1.92705	2.56592	3.20479	0.0267365	3.7902e-4	0.123349	0.0176313
chr8	26310812	26310912	3716289	0	+	0.3	(0.28,0.32]	chr8	345372	58	INTRON	INTRON	PPP2R2A	ENSG00000221914.11	ENST00000380737.8:ENST00000520329.5:ENST00000518254.5:ENST00000524169.5:ENST00000518397.5:ENST00000522535.5:ENST00000665949.1:ENST00000522150.5:ENST00000523473.5:ENST00000521095.5:ENST00000660435.1:ENST00000523925.5:ENST00000524099.5:ENST00000315985.7:ENST00000519636.5:ENST00000522482.5:ENST00000521557.5:ENST00000519439.5:ENST00000521484.5:ENST00000523964.5:ENST00000667651.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	137	2	2.25881	2.565875	2.87294	0.009974	2.13258e-4	0.0842795	0.0128205
chr1	22058996	22059096	42264	0	+	0.5	(0.476,0.515]	chr1	5072	28	INTRON	INTRON	ENSG00000289694:CDC42	ENSG00000289694.1:ENSG00000070831.18	ENST00000695855.1:ENST00000695856.1:ENST00000344548.8:ENST00000400259.5:ENST00000667384.2:ENST00000411827.2:ENST00000695858.1:ENST00000695857.1:ENST00000315554.14:ENST00000695859.1:ENST00000498236.1:ENST00000656825.1:ENST00000651171.1:ENST00000652582.1:ENST00000695860.1:ENST00000695796.1:ENST00000695797.1:ENST00000662562.2:ENST00000695798.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	47	2	2.13304	2.56578	2.99852	0.024866	0.0077575	0.132101	0.0757402
chr17	17189168	17189268	6564559	0	+	0.49	(0.476,0.515]	chr17	638116	44	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	MPRIP	ENSG00000133030.22	ENST00000651222.2:ENST00000395811.9:ENST00000578209.5:ENST00000581989.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	47	2	2.13304	2.56578	2.99852	0.024866	0.0077575	0.132101	0.0757402
chr3	87823523	87823623	1455320	0	+	0.51	(0.476,0.515]	chr3	153149	10	INTRON	INTRON	HTR1F	ENSG00000179097.7	ENST00000319595.7	protein_coding	protein_coding	protein_coding	protein_coding	3	47	2	2.13304	2.56578	2.99852	0.024866	0.0077575	0.132101	0.0757402
chr18	21595663	21595762	6955065	0	-	0.565657	(0.515,0.57]	chr18	688032	18	INTRON	INTRON	ESCO1	ENSG00000141446.11	ENST00000269214.10:ENST00000383276.1:ENST00000580101.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	11	124	2	2.0105	2.565705	3.12091	0.00172406	1.0674e-4	0.038341600000000003	0.00924854
chr5	138468739	138468833	2495857	0	+	0.319149	(0.28,0.32]	chr5	238660	8	UTR3	UTR3:EXON_MRNA	EGR1	ENSG00000120738.8	ENST00000239938.5	protein_coding	protein_coding	protein_coding	protein_coding	16	266	2	1.72752	2.5657	3.40388	0.00490824	2.90839e-5	0.0643744	0.00448686
chr11	28118170	28118269	4752252	0	+	0.323232	(0.32,0.35]	chr11	440072	42	INTRON	INTRON	METTL15	ENSG00000169519.21	ENST00000406787.7:ENST00000403099.5:ENST00000451385.6:ENST00000407364.8:ENST00000532947.2:ENST00000634627.1:ENST00000634973.1:ENST00000303459.10:ENST00000634721.1:ENST00000634762.1:ENST00000437814.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	55	2	2.49929	2.565695	2.6321	0.0268	0.00776612	0.123349	0.0787356
chr11	9287301	9287401	4909156	0	-	0.36	(0.35,0.378]	chr11	460139	2	SS5_PROX	SS5_PROX:INTRON	TMEM41B	ENSG00000166471.11	ENST00000524543.5:ENST00000528080.6:ENST00000299596.8:ENST00000611268.4:ENST00000533867.1:ENST00000527813.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	62	2	1.87586	2.565675	3.25549	0.0268864	0.00363602	0.135275	0.0535085
chr22	21830836	21830936	7561018	0	-	0.39	(0.378,0.408]	chr22	773388	226	INTRON	INTRON	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	3	49	2	2.46345	2.5656499999999998	2.66785	0.0224639	0.00827342	0.11692	0.0813266
chr3	23815507	23815607	1387825	0	+	0.38	(0.378,0.408]	chr3	145385	36	INTRON	INTRON	UBE2E1	ENSG00000170142.12	ENST00000306627.8:ENST00000346855.7:ENST00000495141.5:ENST00000442670.5:ENST00000424381.5:ENST00000467766.5:ENST00000475680.5:ENST00000452012.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	49	2	2.46345	2.5656499999999998	2.66785	0.0224639	0.00827342	0.11692	0.0813266
chr3	185924378	185924477	1886461	0	-	0.393939	(0.378,0.408]	chr3	188623	5	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	TRA2B	ENSG00000136527.19	ENST00000453386.7:ENST00000492417.5:ENST00000463328.5:ENST00000487615.5:ENST00000456380.5:ENST00000382191.4:ENST00000465245.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	49	2	2.46345	2.5656499999999998	2.66785	0.0224639	0.00827342	0.11692	0.0813266
chr4	55608819	55608919	2150421	0	-	0.39	(0.378,0.408]	chr4	211624	3	SS5_PROX	SS5_PROX:INTRON	NMU	ENSG00000109255.11	ENST00000511469.5:ENST00000264218.7:ENST00000505262.5:ENST00000507338.1:ENST00000515325.5:ENST00000509371.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	49	2	2.46345	2.5656499999999998	2.66785	0.0224639	0.00827342	0.11692	0.0813266
chr9	130637877	130637972	4213698	0	+	0.2	[0,0.28]	chr9	386377	10	UTR3	UTR3:EXON_MRNA	FUBP3	ENSG00000107164.16	ENST00000319725.10:ENST00000650723.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	68	2	2.48813	2.56561	2.64309	0.0308646	0.00953591	0.13151	0.0863913
chr4	78854131	78854230	1982171	0	+	0.292929	(0.28,0.32]	chr4	198504	27	INTRON	INTRON	BMP2K	ENSG00000138756.19	ENST00000389010.7:ENST00000502613.3:ENST00000502871.5:ENST00000505725.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	137	2	2.28406	2.5656	2.84714	0.00310758	0.00134241	0.0498063	0.0337085
chr16	29511291	29511391	6470678	0	-	0.3	(0.28,0.32]	chr16	625147	54	INTRON	INTRON	ENSG00000288632	ENSG00000288632.1	ENST00000675579.1	lncRNA	lncRNA	lncRNA	lncRNA	7	135	2	2.33674	2.5655349999999997	2.79433	0.00413289	8.00952e-4	0.0566868	0.0258804
chr17	50862884	50862979	6795318	0	-	0.315789	(0.28,0.32]	chr17	670794	8	UTR3	UTR3:EXON_MRNA	TOB1	ENSG00000141232.5	ENST00000499247.3	protein_coding	protein_coding	protein_coding	protein_coding	11	192	2	1.75557	2.565475	3.37538	0.00819125	8.95268e-5	0.0810802	0.00844245
chr11	45861360	45861460	4783708	0	+	0.38	(0.378,0.408]	chr11	442351	3	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	CRY2	ENSG00000121671.12	ENST00000417225.6:ENST00000616623.4:ENST00000443527.6:ENST00000616080.2:ENST00000473199.5:ENST00000533779.1:ENST00000525110.1:ENST00000495237.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	49	2	2.17608	2.565335	2.95459	0.0218783	0.00957623	0.123836	0.0820838
chr5	87370456	87370556	2668486	0	-	0.39	(0.378,0.408]	chr5	252550	512	INTRON	INTRON	CCNH	ENSG00000134480.16	ENST00000645953.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	3	49	2	2.17608	2.565335	2.95459	0.0218783	0.00957623	0.123836	0.0820838
chr19	21161951	21162051	7040157	0	+	0.44	(0.408,0.44]	chr19	701931	104	INTRON	INTRON	ZNF431	ENSG00000196705.8	ENST00000600692.5:ENST00000599296.5:ENST00000594425.5:ENST00000311048.11:ENST00000598331.1	protein_coding	protein_coding	protein_coding	protein_coding	4	58	2	2.3494	2.56531	2.78122	0.015812	0.00462504	0.101453	0.062717
chr15	64483910	64484010	6044321	0	+	0.37	(0.35,0.378]	chr15	575688	227	INTRON	INTRON	ZNF609	ENSG00000180357.10	ENST00000326648.5:ENST00000416172.1	protein_coding	protein_coding	protein_coding	protein_coding	6	81	2	1.34146	2.56529	3.78912	0.0634598	4.25686e-4	0.19806000000000001	0.0189958
chr1	155914507	155914601	564642	0	-	0.287234	(0.28,0.32]	chr1	67438	3	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	KHDC4	ENSG00000132680.11	ENST00000368321.8:ENST00000368320.7:ENST00000478002.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	190	2	2.36781	2.5652749999999997	2.76274	0.00225787	1.87955e-4	0.0425438	0.011951
chr17	27121308	27121408	6580038	0	+	0.28	[0,0.28]	chr17	639586	245	INTRON	INTRON	ENSG00000285822	ENSG00000285822.1	ENST00000649401.1	lncRNA	lncRNA	lncRNA	lncRNA	11	232	2	2.24628	2.565235	2.88419	0.00144171	5.86058e-4	0.0348221	0.0224488
chr7	152280132	152280232	3679723	0	-	0.44	(0.408,0.44]	chr7	341617	59	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000684262.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	57	2	1.93002	2.5651800000000002	3.20034	0.022095	0.00398025	0.123903	0.0549214
chr1	42832296	42832394	84456	0	+	0.44898	(0.44,0.476]	chr1	11106	8	INTRON	INTRON	ERMAP	ENSG00000164010.15	ENST00000372517.8:ENST00000647120.1:ENST00000487556.6:ENST00000642150.1:ENST00000372514.7:ENST00000328249.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	47	2	2.21079	2.5651450000000002	2.9195	0.0194581	0.0102021	0.119831	0.0850389
chr1	39878506	39878605	428223	0	-	0.313131	(0.28,0.32]	chr1	52034	20	INTRON	INTRON	TRIT1	ENSG00000043514.17	ENST00000316891.10:ENST00000648678.1:ENST00000537440.5:ENST00000372818.5:ENST00000462797.5:ENST00000441669.6:ENST00000495175.6:ENST00000491865.5:ENST00000541099.5:ENST00000492612.6:ENST00000489945.5:ENST00000486825.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	44	2	2.32871	2.56514	2.80157	0.0581621	0.0147132	0.167723	0.106558
chr1	246655213	246655313	350883	0	+	0.33	(0.32,0.35]	chr1	40540	68	INTRON	INTRON	CNST	ENSG00000162852.14	ENST00000366513.9	protein_coding	protein_coding	protein_coding	protein_coding	4	76	2	2.4053	2.565015	2.72473	0.0108284	0.00433316	0.0920575	0.0579683
chr3	12642884	12642984	1617219	0	-	0.32	(0.28,0.32]	chr3	166990	133	INTRON	INTRON	RAF1	ENSG00000132155.14	ENST00000688543.1:ENST00000685348.1:ENST00000251849.9:ENST00000442415.7:ENST00000688444.1:ENST00000692093.1:ENST00000691724.1:ENST00000423275.6:ENST00000687326.1:ENST00000688803.1:ENST00000689876.1:ENST00000686455.1:ENST00000684903.1:ENST00000693312.1:ENST00000690460.1:ENST00000692773.1:ENST00000688625.1:ENST00000693664.1:ENST00000686762.1:ENST00000692311.1:ENST00000692558.1:ENST00000691779.1:ENST00000685738.1:ENST00000690397.1:ENST00000687923.1:ENST00000688269.1:ENST00000693705.1:ENST00000689097.1:ENST00000691899.1:ENST00000689914.1:ENST00000690625.1:ENST00000689389.1:ENST00000687257.1:ENST00000686409.1:ENST00000685653.1:ENST00000689540.1:ENST00000691396.1:ENST00000685437.1:ENST00000689418.1:ENST00000687940.1:ENST00000689481.1:ENST00000491290.2:ENST00000686479.1:ENST00000689033.1:ENST00000692777.1:ENST00000689226.1:ENST00000691718.1:ENST00000692959.1:ENST00000685740.1:ENST00000688753.1:ENST00000688779.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	44	2	2.45545	2.56499	2.67453	0.0438092	0.021289	0.14901	0.123318
chr6	109369615	109369713	3185782	0	-	0.316327	(0.28,0.32]	chr6	296659	2	INTRON	INTRON	CD164	ENSG00000135535.17	ENST00000310786.10:ENST00000413644.6:ENST00000504373.2:ENST00000415861.2:ENST00000324953.9:ENST00000275080.11:ENST00000499860.6:ENST00000512821.5:ENST00000506649.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	44	2	2.45545	2.56499	2.67453	0.0438092	0.021289	0.14901	0.123318
chr7	32874393	32874491	3515447	0	-	0.285714	(0.28,0.32]	chr7	327768	32	INTRON	INTRON	KBTBD2	ENSG00000170852.12	ENST00000304056.9:ENST00000485611.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	44	2	2.45545	2.56499	2.67453	0.0438092	0.021289	0.14901	0.123318
chr19	8483711	8483810	7011167	0	+	0.373737	(0.35,0.378]	chr19	696206	1	INTRON	INTRON	HNRNPM	ENSG00000099783.12	ENST00000348943.7:ENST00000600092.5:ENST00000325495.9:ENST00000600806.5:ENST00000620401.4:ENST00000594907.5:ENST00000597270.1:ENST00000597081.1:ENST00000598603.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	131	2	2.32476	2.56489	2.80502	0.00343673	2.28494e-4	0.0517761	0.0133228
chr7	141753080	141753180	3440251	0	+	0.34	(0.32,0.35]	chr7	320701	23	INTRON	INTRON	SSBP1	ENSG00000106028.11	ENST00000465582.5	protein_coding	protein_coding	protein_coding	protein_coding	10	115	2	1.67614	2.564875	3.45361	0.00872059	0.00193809	0.0845538	0.0399255
chr16	30243973	30244071	6472546	0	-	0.387755	(0.378,0.408]	chr16	625558	34	INTRON	INTRON	NPIPB13	ENSG00000198064.14	ENST00000520915.5:ENST00000568053.5:ENST00000564502.1:ENST00000564219.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	66	2	2.26009	2.56482	2.86955	0.0188651	0.00159247	0.108861	0.0367961
chr1	26881859	26881953	405525	0	-	0.510638	(0.476,0.515]	chr1	48764	9	EXON_LNCRNA	EXON_LNCRNA:INTRON	GPN2:ENSG00000289554	ENSG00000142751.15:ENSG00000289554.1	ENST00000374135.9:ENST00000374133.3:ENST00000477418.2:ENST00000687749.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	2	35	2	2.3223	2.564795	2.80729	0.0519312	0.0126008	0.159306	0.0980703
chr12	69599537	69599625	5165534	0	+	0.477273	(0.476,0.515]	chr12	489279	3	SS3_PROX	SS3_PROX:INTRON	CCT2	ENSG00000166226.13	ENST00000299300.11:ENST00000544368.6:ENST00000550010.5:ENST00000543146.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	35	2	2.3223	2.564795	2.80729	0.0519312	0.0126008	0.159306	0.0980703
chr13	19962822	19962922	5452469	0	+	0.48	(0.476,0.515]	chr13	522434	24	INTRON	INTRON	ZMYM2	ENSG00000121741.17	ENST00000382881.7:ENST00000382874.6:ENST00000610343.5:ENST00000382871.3:ENST00000620447.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	35	2	2.3223	2.564795	2.80729	0.0519312	0.0126008	0.159306	0.0980703
chr5	53942519	53942619	2617229	0	-	0.5	(0.476,0.515]	chr5	248835	305	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	35	2	2.3223	2.564795	2.80729	0.0519312	0.0126008	0.159306	0.0980703
chr19	9651555	9651654	7133263	0	-	0.515152	(0.476,0.515]	chr19	718879	99	UTR3	UTR3:EXON_MRNA	ZNF562	ENSG00000171466.10	ENST00000453372.7:ENST00000293648.8	protein_coding	protein_coding	protein_coding	protein_coding	3	49	2	1.8388	2.56477	3.29074	0.0564473	0.00272563	0.184423	0.0467523
chr15	63668250	63668348	6199199	0	-	0.428571	(0.408,0.44]	chr15	591216	14	INTRON	INTRON	HERC1	ENSG00000103657.14	ENST00000443617.7	protein_coding	protein_coding	protein_coding	protein_coding	5	78	2	2.36185	2.564765	2.76768	0.0133164	6.71664e-4	0.094512	0.0235155
chr6	16130256	16130356	2825784	0	+	0.42	(0.408,0.44]	chr6	265304	3	SS3_PROX	SS3_PROX:INTRON	MYLIP	ENSG00000007944.15	ENST00000356840.8:ENST00000349606.4	protein_coding	protein_coding	protein_coding	protein_coding	15	219	2	2.45883	2.564765	2.6707	3.85784e-4	4.04532e-5	0.0182738	0.00516242
chrX	44904285	44904385	7648913	0	+	0.51	(0.476,0.515]	chrX	782726	299	INTRON	INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000675440.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000621147.5:ENST00000475233.1:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	80	2	1.88327	2.564615	3.24596	0.00672673	0.00322919	0.0738715	0.0507087
chr17	67193272	67193369	6825301	0	-	0.42268	(0.408,0.44]	chr17	674506	26	INTRON	INTRON	HELZ	ENSG00000198265.12	ENST00000358691.10:ENST00000579953.5:ENST00000580168.5:ENST00000417253.7:ENST00000580662.5	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:nonsense_mediated_decay:processed_transcript	6	99	2	1.83501	2.56461	3.29421	0.0323448	3.47956e-5	0.133003	0.00469546
chr4	32157358	32157455	1943026	0	+	0.371134	(0.35,0.378]	chr4	194743	16	INTRON	INTRON	LINC02506	ENSG00000251129.3	ENST00000665582.2:ENST00000667252.2:ENST00000660373.2:ENST00000684849.1:ENST00000686730.1:ENST00000685407.1:ENST00000655951.1	lncRNA	lncRNA	lncRNA	lncRNA	3	52	2	2.53856	2.5645100000000003	2.59046	0.0326077	0.00528327	0.133687	0.0656295
chr7	107057370	107057469	3377292	0	+	0.363636	(0.35,0.378]	chr7	316240	118	INTRON	INTRON	PRKAR2B	ENSG00000005249.13	ENST00000265717.5	protein_coding	protein_coding	protein_coding	protein_coding	3	52	2	2.53856	2.5645100000000003	2.59046	0.0326077	0.00528327	0.133687	0.0656295
chr10	119158752	119158847	4705119	0	-	0.484211	(0.476,0.515]	chr10	434062	3	INTRON	INTRON	SFXN4	ENSG00000183605.17	ENST00000355697.7:ENST00000461438.5:ENST00000369131.8:ENST00000466218.5:ENST00000419372.5:ENST00000462913.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	35	2	2.56033	2.564505	2.56868	0.0287634	0.0256676	0.133676	0.127066
chr16	1644858	1644957	6274848	0	+	0.494949	(0.476,0.515]	chr16	599410	33	INTRON	INTRON	CRAMP1	ENSG00000007545.16	ENST00000397412.8:ENST00000293925.9	protein_coding	protein_coding	protein_coding	protein_coding	2	35	2	2.56033	2.564505	2.56868	0.0287634	0.0256676	0.133676	0.127066
chr19	213063	213160	7108823	0	-	0.484536	(0.476,0.515]	chr19	713694	8	INTRON	INTRON	LINC01002	ENSG00000282508.2	ENST00000631644.1:ENST00000632624.2:ENST00000633109.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	2	35	2	2.56033	2.564505	2.56868	0.0287634	0.0256676	0.133676	0.127066
chr20	62146986	62147086	7297515	0	+	0.5	(0.476,0.515]	chr20	742244	27	INTRON	INTRON	SS18L1	ENSG00000184402.15	ENST00000331758.8:ENST00000450482.5	protein_coding	protein_coding	protein_coding	protein_coding	2	35	2	2.56033	2.564505	2.56868	0.0287634	0.0256676	0.133676	0.127066
chr8	37898570	37898670	3935936	0	-	0.5	(0.476,0.515]	chr8	360577	1	SS5_PROX	SS5_PROX:INTRON	RAB11FIP1	ENSG00000156675.16	ENST00000330843.9:ENST00000287263.8:ENST00000522727.5	protein_coding	protein_coding	protein_coding	protein_coding	10	136	2	1.87075	2.564475	3.2582	0.00621846	4.43501e-5	0.0680637	0.00540124
chr7	130190334	130190433	3638601	0	-	0.464646	(0.44,0.476]	chr7	338389	46	INTRON	INTRON	TMEM209	ENSG00000146842.17	ENST00000397622.7:ENST00000473456.5:ENST00000462753.5	protein_coding	protein_coding	protein_coding	protein_coding	3	49	2	2.38519	2.564455	2.74372	0.0153007	0.012193	0.108569	0.0910127
chr1	100044824	100044924	171671	0	+	0.34	(0.32,0.35]	chr1	18596	12	INTRON	INTRON	ENSG00000283761:MFSD14A	ENSG00000283761.1:ENSG00000156875.14	ENST00000638792.1:ENST00000638968.1:ENST00000639040.1:ENST00000639037.1:ENST00000638779.1:ENST00000639171.1:ENST00000640238.1:ENST00000640357.1:ENST00000370152.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	68	2	2.43956	2.564385	2.68921	0.0230336	0.00352597	0.118056	0.0546236
chr2	55039017	55039117	1121295	0	-	0.35	(0.32,0.35]	chr2	120163	104	INTRON	INTRON	RTN4	ENSG00000115310.19	ENST00000404909.5:ENST00000394611.6:ENST00000317610.11:ENST00000357732.8:ENST00000337526.11:ENST00000357376.7:ENST00000405240.5:ENST00000438462.1:ENST00000427710.5	protein_coding	protein_coding	protein_coding	protein_coding	4	68	2	2.43956	2.564385	2.68921	0.0230336	0.00352597	0.118056	0.0546236
chr14	103423153	103423253	5826004	0	+	0.39	(0.378,0.408]	chr14	552808	53	INTRON	INTRON	MARK3	ENSG00000075413.19	ENST00000678179.1:ENST00000676838.1:ENST00000677348.1:ENST00000677404.1:ENST00000676694.1:ENST00000676938.1:ENST00000678619.1:ENST00000676897.1:ENST00000677214.1:ENST00000677942.1:ENST00000676830.1:ENST00000678999.1:ENST00000677228.1:ENST00000556744.2:ENST00000677104.1:ENST00000679330.1:ENST00000560417.6:ENST00000440884.7:ENST00000676475.1:ENST00000677035.1:ENST00000678022.1:ENST00000677560.1:ENST00000561314.6:ENST00000429436.7:ENST00000677118.1:ENST00000676564.1:ENST00000678169.1:ENST00000678175.1:ENST00000678897.1:ENST00000678278.1:ENST00000676645.1:ENST00000677829.1:ENST00000678302.1:ENST00000677133.1:ENST00000561164.2:ENST00000558223.6:ENST00000559328.6:ENST00000678207.1:ENST00000677360.1:ENST00000676905.1:ENST00000678343.1:ENST00000677347.1:ENST00000678071.1:ENST00000677432.1:ENST00000678237.1:ENST00000677604.1:ENST00000676518.1:ENST00000677051.1:ENST00000677857.1:ENST00000677869.1:ENST00000678423.1:ENST00000560603.6:ENST00000416682.6:ENST00000303622.13:ENST00000216288.11:ENST00000679105.1:ENST00000553942.5:ENST00000335102.9:ENST00000561225.1:ENST00000678091.1:ENST00000561071.5:ENST00000558698.5:ENST00000559268.5:ENST00000560731.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	37	2	2.13703	2.564365	2.9917	0.0797592	0.0068789	0.19979	0.0749442
chr8	86345323	86345422	3789277	0	+	0.383838	(0.378,0.408]	chr8	351308	20	INTRON	INTRON	WWP1	ENSG00000123124.14	ENST00000517970.6:ENST00000523863.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	37	2	2.13703	2.564365	2.9917	0.0797592	0.0068789	0.19979	0.0749442
chr17	67340256	67340354	6825865	0	-	0.326531	(0.32,0.35]	chr17	674562	25	UTR3	UTR3:EXON_MRNA	PSMD12	ENSG00000197170.10	ENST00000356126.8:ENST00000357146.4	protein_coding	protein_coding	protein_coding	protein_coding	3	58	2	1.81328	2.564305	3.31533	0.0615716	0.00323121	0.193423	0.0507087
chr21	38110121	38110221	7463987	0	-	0.33	(0.32,0.35]	chr21	760303	104	INTRON	INTRON	DSCR4	ENSG00000184029.9	ENST00000398948.5:ENST00000328264.7:ENST00000482032.1	lncRNA	lncRNA	lncRNA	lncRNA	7	125	2	2.27939	2.564285	2.84918	0.00844518	2.0298e-4	0.0776969	0.0124395
chr4	147679425	147679524	2258674	0	-	0.545455	(0.515,0.57]	chr4	220435	52	INTRON	INTRON	PRMT9	ENSG00000164169.13	ENST00000322396.7:ENST00000514886.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	65	2	2.496	2.56425	2.6325	0.00439001	0.00225531	0.0585064	0.0436331
chr7	138563486	138563586	3435685	0	+	0.44	(0.408,0.44]	chr7	320015	67	INTRON	INTRON	TRIM24	ENSG00000122779.18	ENST00000343526.9:ENST00000415680.6:ENST00000497516.5:ENST00000493595.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	98	2	2.3372	2.56422	2.79124	0.00276922	0.00122451	0.0469265	0.0324961
chrX	71574892	71574992	7680391	0	+	0.3	(0.28,0.32]	chrX	786485	12	UTR3	UTR3:EXON_MRNA	OGT	ENSG00000147162.14	ENST00000373719.8	protein_coding	protein_coding	protein_coding	protein_coding	19	225	2	1.39739	2.564215	3.73104	0.0138117	6.60164e-5	0.10247	0.0071649
chr7	105381049	105381149	3603827	0	-	0.52	(0.515,0.57]	chr7	336161	741	INTRON	INTRON	SRPK2	ENSG00000135250.17	ENST00000393651.8:ENST00000482897.5:ENST00000460391.5:ENST00000462282.5:ENST00000465112.5:ENST00000482862.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	65	2	2.36534	2.56417	2.763	0.00404547	0.00257143	0.0578376	0.045134
chr4	144140635	144140693	2252082	0	-	0.431034	(0.408,0.44]	chr4	220067	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	GYPA	ENSG00000170180.22	ENST00000641688.3:ENST00000360771.8:ENST00000642295.1:ENST00000324022.14:ENST00000646447.1:ENST00000535709.6:ENST00000508337.1:ENST00000643254.1:ENST00000643148.1:ENST00000642738.1:ENST00000642713.1:ENST00000509346.5:ENST00000514603.1:ENST00000644398.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	73	2	1.9279	2.56412	3.20034	0.00807087	0.00398025	0.0806514	0.0549214
chr7	110775914	110776014	3616236	0	-	0.25	[0,0.28]	chr7	337078	502	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000487733.5:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	50	2	2.27119	2.564045	2.8569	0.070351	0.013822	0.184298	0.10247
chr2	235550732	235550832	1041904	0	+	0.37	(0.35,0.378]	chr2	111222	258	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1:ENST00000402604.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	70	2	2.49643	2.56398	2.63153	0.00752974	0.00562761	0.0773151	0.0653997
chr16	87734336	87734436	6538353	0	-	0.36	(0.35,0.378]	chr16	633530	33	INTRON	INTRON	KLHDC4	ENSG00000104731.14	ENST00000567298.5:ENST00000270583.10:ENST00000347925.9:ENST00000353170.9:ENST00000316853.10:ENST00000566349.5:ENST00000562155.5:ENST00000622456.4:ENST00000562261.1:ENST00000566661.5:ENST00000567513.1:ENST00000564484.5:ENST00000565328.5:ENST00000569747.5:ENST00000564396.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	52	2	2.04358	2.563945	3.08431	0.0329533	0.0065853	0.145171	0.0701901
chr11	34054360	34054454	4767674	0	+	0.382979	(0.378,0.408]	chr11	440943	3	INTRON	INTRON	CAPRIN1	ENSG00000135387.21	ENST00000341394.9:ENST00000528856.5:ENST00000389645.7:ENST00000534042.5:ENST00000534825.5:ENST00000532820.5:ENST00000530820.5:ENST00000529307.1:ENST00000526494.5:ENST00000532755.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	110	2	2.3978	2.563915	2.73003	0.00235448	8.35208e-4	0.0436213	0.0263691
chr11	67295923	67296022	4814173	0	+	0.252525	[0,0.28]	chr11	448332	34	INTRON	INTRON	ANKRD13D	ENSG00000172932.16	ENST00000511455.7:ENST00000308440.11:ENST00000447274.7:ENST00000506531.5:ENST00000504186.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	50	2	2.49527	2.563825	2.63238	0.0436497	0.0259691	0.14882	0.133676
chr14	19064793	19064893	5655044	0	+	0.28	[0,0.28]	chr14	538990	1	SS5_PROX	SS5_PROX:INTRON	DUXAP9	ENSG00000225210.10	ENST00000549484.5:ENST00000547220.5:ENST00000610585.4:ENST00000621361.4:ENST00000620237.1:ENST00000619938.1:ENST00000644980.1:ENST00000619210.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	2	50	2	2.49527	2.563825	2.63238	0.0436497	0.0259691	0.14882	0.133676
chr17	62043275	62043375	6810660	0	-	0.28	[0,0.28]	chr17	672946	73	INTRON	INTRON	MED13	ENSG00000108510.10	ENST00000397786.7	protein_coding	protein_coding	protein_coding	protein_coding	4	87	2	2.54624	2.5638050000000003	2.58137	0.0388449	0.00250515	0.143072	0.0464447
chr3	44443879	44443979	1676381	0	-	0.46	(0.44,0.476]	chr3	171106	123	UTR3	UTR3:EXON_MRNA	ZNF445	ENSG00000185219.18	ENST00000396077.8:ENST00000425708.6	protein_coding	protein_coding	protein_coding	protein_coding	13	177	2	1.96459	2.56377	3.16295	0.00261013	2.29402e-5	0.0455413	0.00373386
chr4	17928215	17928315	2117355	0	-	0.44	(0.408,0.44]	chr4	209129	185	INTRON	INTRON	LCORL	ENSG00000178177.17	ENST00000635767.2:ENST00000326877.8:ENST00000675131.1:ENST00000675143.1:ENST00000637787.1:ENST00000675605.1:ENST00000510451.5:ENST00000510121.5:ENST00000675927.1:ENST00000382224.5:ENST00000382226.5:ENST00000676061.1:ENST00000674942.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	48	2	2.16746	2.563765	2.96007	0.024436	0.00753901	0.12011	0.0773151
chr6	158785983	158786083	3252999	0	-	0.47	(0.44,0.476]	chr6	302361	4	SS3_PROX	SS3_PROX:INTRON	EZR	ENSG00000092820.19	ENST00000337147.11:ENST00000367075.4:ENST00000476189.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	57	2	1.71574	2.56375	3.41176	0.045256	0.00130987	0.149888	0.0333932
chr9	131442506	131442604	4217459	0	+	0.520408	(0.515,0.57]	chr9	386746	31	INTRON	INTRON	PRRC2B	ENSG00000288701.1	ENST00000684596.1:ENST00000683519.1:ENST00000682501.1	protein_coding	protein_coding	protein_coding	protein_coding	6	62	2	1.54678	2.56371	3.58064	0.0324987	6.54693e-4	0.145164	0.0233335
chr19	12545025	12545125	7139893	0	-	0.53	(0.515,0.57]	chr19	720335	31	INTRON	INTRON	ZNF564	ENSG00000249709.8	ENST00000339282.12:ENST00000427105.1:ENST00000596193.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	143	2	2.0105	2.563675	3.11685	0.00172406	3.41795e-5	0.038341600000000003	0.00493498
chr17	46124236	46124336	6784178	0	-	0.31	(0.28,0.32]	chr17	669216	30	INTRON	INTRON	KANSL1	ENSG00000120071.15	ENST00000574590.6:ENST00000572904.6:ENST00000432791.7:ENST00000575318.6:ENST00000638275.1:ENST00000262419.10:ENST00000648792.1:ENST00000639531.1:ENST00000639150.1:ENST00000639853.1:ENST00000571698.2:ENST00000639375.1:ENST00000638269.1:ENST00000576248.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	134	2	2.15434	2.5636	2.97286	0.00818138	3.34495e-4	0.0768236	0.0162792
chr6	136287137	136287236	3231101	0	-	0.50505	(0.476,0.515]	chr6	300408	41	INTRON	INTRON	BCLAF1	ENSG00000029363.17	ENST00000640069.1:ENST00000531224.6:ENST00000353331.8:ENST00000527536.5:ENST00000527613.5:ENST00000530767.5:ENST00000527759.5:ENST00000534269.5:ENST00000532384.5:ENST00000530429.5:ENST00000628517.2:ENST00000529826.5:ENST00000528229.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	17	241	2	2.21172	2.56359	2.91546	5.77734e-4	1.28011e-5	0.0223108	0.00266023
chr10	74033616	74033715	4454857	0	+	0.393939	(0.378,0.408]	chr10	411391	164	INTRON	INTRON	VCL	ENSG00000035403.18	ENST00000623461.3:ENST00000372755.7:ENST00000624354.3:ENST00000211998.10:ENST00000478896.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	37	2	2.45932	2.563585	2.66785	0.0346754	0.0224639	0.148144	0.11692
chr11	74244337	74244437	4827264	0	+	0.38	(0.378,0.408]	chr11	450499	47	INTRON	INTRON	PPME1	ENSG00000214517.10	ENST00000328257.13:ENST00000398427.6:ENST00000543525.3:ENST00000535205.5:ENST00000541340.5:ENST00000538501.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	37	2	2.45932	2.563585	2.66785	0.0346754	0.0224639	0.148144	0.11692
chr19	17268406	17268482	7029465	0	+	0.355263	(0.35,0.378]	chr19	699845	3	SS3_PROX	SS3_PROX:INTRON	BABAM1	ENSG00000105393.16	ENST00000594247.5:ENST00000447614.6:ENST00000359435.8:ENST00000599474.5:ENST00000598188.6:ENST00000601043.5:ENST00000595393.5:ENST00000599057.5:ENST00000601171.5:ENST00000596335.5:ENST00000601436.5:ENST00000448635.2:ENST00000595632.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	162	2	2.46438	2.56348	2.66258	0.00107609	2.38406e-4	0.0301994	0.0136403
chr19	40461033	40461132	7184535	0	-	0.424242	(0.408,0.44]	chr19	726754	21	INTRON	INTRON	BLVRB	ENSG00000090013.11	ENST00000643519.1:ENST00000263368.9:ENST00000595483.5:ENST00000643596.1:ENST00000597870.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	66	2	2.00228	2.56343	3.12458	0.0389732	4.61817e-4	0.143072	0.0194611
chr22	41842450	41842550	7526091	0	+	0.36	(0.35,0.378]	chr22	769353	87	INTRON	INTRON	SREBF2	ENSG00000198911.12	ENST00000612482.4:ENST00000361204.9:ENST00000424354.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	99	2	1.58	2.56342	3.54684	0.0148489	0.00119142	0.106937	0.0315806
chr1	40173468	40173567	80084	0	+	0.292929	(0.28,0.32]	chr1	10405	115	INTRON	INTRON	RLF	ENSG00000117000.9	ENST00000372771.5	protein_coding	protein_coding	protein_coding	protein_coding	4	72	2	2.25298	2.5633999999999997	2.87382	0.014868	0.00791652	0.0989021	0.0797304
chr1	61722912	61723012	468350	0	-	0.26	[0,0.28]	chr1	56576	131	INTRON	INTRON	TM2D1	ENSG00000162604.12	ENST00000606498.5:ENST00000294613.9:ENST00000371180.6:ENST00000488206.5:ENST00000468586.5:ENST00000371178.5:ENST00000494926.5:ENST00000496465.1:ENST00000371177.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	51	2	2.43761	2.563395	2.68918	0.0423864	0.0275571	0.161744	0.123904
chr18	9491520	9491620	6871294	0	+	0.38	(0.378,0.408]	chr18	680716	117	INTRON	INTRON	RALBP1	ENSG00000017797.13	ENST00000019317.8:ENST00000585015.6:ENST00000383432.8:ENST00000609094.2:ENST00000458039.3:ENST00000577221.1	protein_coding	protein_coding	protein_coding	protein_coding	7	104	2	2.53292	2.56336	2.5938	0.00614976	4.51433e-4	0.0676501	0.0192381
chr21	9109395	9109495	7426433	0	-	0.31	(0.28,0.32]	chr21	757579	211	INTRON	INTRON	TEKT4P2	ENSG00000188681.12	ENST00000690061.1:ENST00000689141.1:ENST00000688310.1:ENST00000687537.1:ENST00000690096.1:ENST00000687888.1:ENST00000690389.1:ENST00000684989.1:ENST00000416067.6:ENST00000693307.1:ENST00000692383.1:ENST00000685666.1:ENST00000688451.1:ENST00000691190.1:ENST00000685532.1:ENST00000687488.1:ENST00000690713.1:ENST00000691834.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	4	74	2	1.99988	2.56334	3.1268	0.0228757	0.00508956	0.118056	0.0646039
chr16	2249933	2250031	6431512	0	-	0.510204	(0.476,0.515]	chr16	618769	26	INTRON	INTRON	ECI1	ENSG00000167969.13	ENST00000301729.9:ENST00000562238.5:ENST00000570258.5:ENST00000566379.1:ENST00000563029.5:ENST00000561688.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	65	2	2.32001	2.5632599999999996	2.80651	0.0136217	0.00250121	0.101682	0.0446195
chr3	129181193	129181292	1815303	0	-	0.343434	(0.32,0.35]	chr3	182484	91	INTRON	INTRON	CNBP	ENSG00000169714.17	ENST00000422453.7:ENST00000502976.5:ENST00000451728.6:ENST00000446936.6:ENST00000504813.5:ENST00000500450.6:ENST00000441626.6:ENST00000502372.1:ENST00000512338.1:ENST00000507573.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	102	2	2.4323	2.563255	2.69421	0.00484681	0.00168279	0.0605691	0.0381547
chr14	103407559	103407658	5825843	0	+	0.484848	(0.476,0.515]	chr14	552794	19	INTRON	INTRON	MARK3	ENSG00000075413.19	ENST00000678179.1:ENST00000676838.1:ENST00000677348.1:ENST00000677404.1:ENST00000676694.1:ENST00000676938.1:ENST00000678619.1:ENST00000676897.1:ENST00000677214.1:ENST00000677942.1:ENST00000676830.1:ENST00000678999.1:ENST00000677228.1:ENST00000556744.2:ENST00000677104.1:ENST00000679330.1:ENST00000560417.6:ENST00000440884.7:ENST00000676475.1:ENST00000677035.1:ENST00000678022.1:ENST00000677560.1:ENST00000561314.6:ENST00000429436.7:ENST00000677118.1:ENST00000676564.1:ENST00000678169.1:ENST00000678175.1:ENST00000678897.1:ENST00000678278.1:ENST00000676645.1:ENST00000677829.1:ENST00000678302.1:ENST00000677133.1:ENST00000561164.2:ENST00000558223.6:ENST00000559328.6:ENST00000678207.1:ENST00000677360.1:ENST00000676905.1:ENST00000678343.1:ENST00000677347.1:ENST00000678071.1:ENST00000677432.1:ENST00000678237.1:ENST00000677604.1:ENST00000676518.1:ENST00000677051.1:ENST00000677857.1:ENST00000677869.1:ENST00000678423.1:ENST00000560603.6:ENST00000416682.6:ENST00000303622.13:ENST00000216288.11:ENST00000679105.1:ENST00000553942.5:ENST00000335102.9:ENST00000561225.1:ENST00000678091.1:ENST00000561071.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	88	2	2.54395	2.5632400000000004	2.58253	0.00600101	8.361e-4	0.0674604	0.0263691
chr4	1949791	1949889	1911374	0	+	0.397959	(0.378,0.408]	chr4	191793	11	INTRON	INTRON	NSD2	ENSG00000109685.19	ENST00000508803.6:ENST00000382891.9:ENST00000353275.9:ENST00000382892.6:ENST00000382895.7:ENST00000312087.10:ENST00000677559.1:ENST00000511904.1:ENST00000513726.5:ENST00000482415.6:ENST00000514329.5:ENST00000502425.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	68	2	2.12071	2.563195	3.00568	0.00811866	0.00601933	0.0766625	0.0700813
chr12	132095509	132095609	5250299	0	+	0.29	(0.28,0.32]	chr12	499298	36	INTRON	INTRON	EP400P1	ENSG00000185684.16	ENST00000407361.8:ENST00000446190.5:ENST00000690966.1:ENST00000689047.1:ENST00000454179.7:ENST00000689533.1:ENST00000688036.1:ENST00000688136.1:ENST00000488030.5:ENST00000389560.6:ENST00000689403.1:ENST00000443539.6:ENST00000392352.5:ENST00000539205.5:ENST00000332441.7	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	3	60	2	2.08149	2.56317	3.04485	0.031124	0.00894006	0.143644	0.0799922
chr16	28391481	28391566	6468599	0	-	0.294118	(0.28,0.32]	chr16	624653	1	SS5_PROX	SS5_PROX:INTRON	EIF3CL	ENSG00000205609.13	ENST00000398944.7:ENST00000380876.5	protein_coding	protein_coding	protein_coding	protein_coding	5	83	2	1.4428	2.56317	3.68354	0.0712927	5.5135e-4	0.185716	0.0213455
chr2	175167298	175167382	1272333	0	-	0.452381	(0.44,0.476]	chr2	134483	3	PRIMIRNA	PRIMIRNA:INTRON	ATF2:MIR933	ENSG00000115966.18:ENSG00000215973.1	ENST00000345739.9:ENST00000426833.7:ENST00000264110.7:ENST00000409635.5:ENST00000428760.5:ENST00000392544.5:ENST00000417080.5:ENST00000456655.5:ENST00000421438.5:ENST00000429579.5:ENST00000415955.5:ENST00000409499.5:ENST00000435231.6:ENST00000437522.5:ENST00000409833.5:ENST00000413123.5:ENST00000445349.1:ENST00000401154.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript:primary_miRNA	10	136	2	2.13109	2.56306	2.99503	0.00144871	2.98386e-4	0.0349208	0.0160416
chr17	81584413	81584512	6849063	0	-	0.313131	(0.28,0.32]	chr17	678158	120	INTRON	INTRON	NPLOC4	ENSG00000182446.14	ENST00000331134.11:ENST00000374747.9:ENST00000574897.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	117	2	2.28491	2.56299	2.84107	0.0091216	6.40806e-4	0.0811564	0.0228915
chr7	121047992	121048092	3394232	0	+	0.41	(0.408,0.44]	chr7	317688	6	INTRON	INTRON	CPED1	ENSG00000106034.18	ENST00000340646.9:ENST00000310396.10:ENST00000428526.5:ENST00000495036.5:ENST00000450913.6:ENST00000520801.5:ENST00000521774.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	128	2	2.42752	2.56299	2.69846	0.00127877	4.45372e-4	0.0326395	0.0191142
chr6	37292855	37292954	2855668	0	+	0.333333	(0.32,0.35]	chr6	269985	11	INTRON	INTRON	TBC1D22B	ENSG00000065491.8	ENST00000373491.3	protein_coding	protein_coding	protein_coding	protein_coding	3	55	2	1.94202	2.56297	3.18392	0.0486128	0.00379806	0.153946	0.0562562
chr12	113385683	113385783	5232623	0	+	0.45	(0.44,0.476]	chr12	496319	4	SS5_PROX	SS5_PROX:INTRON	PLBD2	ENSG00000151176.8	ENST00000545182.6:ENST00000280800.5	protein_coding	protein_coding	protein_coding	protein_coding	2	35	2	2.38219	2.562955	2.74372	0.045456	0.0153007	0.149888	0.108569
chr15	34196361	34196461	6131258	0	-	0.45	(0.44,0.476]	chr15	583941	180	INTRON	INTRON	KATNBL1	ENSG00000134152.11	ENST00000256544.8:ENST00000560247.5:ENST00000540594.5:ENST00000560671.5:ENST00000557877.5:ENST00000559462.1:ENST00000560108.5:ENST00000559515.1:ENST00000559464.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	35	2	2.38219	2.562955	2.74372	0.045456	0.0153007	0.149888	0.108569
chr15	52026166	52026263	6029091	0	+	0.453608	(0.44,0.476]	chr15	574421	11	INTRON	INTRON	MAPK6	ENSG00000069956.14	ENST00000560802.1:ENST00000691380.1:ENST00000558063.5:ENST00000560254.1:ENST00000681888.1:ENST00000261845.7:ENST00000680066.1:ENST00000680777.1:ENST00000558100.1:ENST00000680652.1:ENST00000558841.1:ENST00000558891.1:ENST00000560774.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	35	2	2.38219	2.562955	2.74372	0.045456	0.0153007	0.149888	0.108569
chr2	10143364	10143461	690935	0	+	0.463918	(0.44,0.476]	chr2	81101	6	INTRON	INTRON	RRM2	ENSG00000171848.16	ENST00000641498.1:ENST00000646978.1:ENST00000381786.7:ENST00000642996.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	2	35	2	2.38219	2.562955	2.74372	0.045456	0.0153007	0.149888	0.108569
chr2	74059682	74059782	812537	0	+	0.47	(0.44,0.476]	chr2	90858	109	INTRON	INTRON	TET3	ENSG00000187605.16	ENST00000409262.8:ENST00000305799.8:ENST00000475405.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	35	2	2.38219	2.562955	2.74372	0.045456	0.0153007	0.149888	0.108569
chr21	29316820	29316920	7392531	0	+	0.46	(0.44,0.476]	chr21	753185	111	INTRON	INTRON	BACH1	ENSG00000156273.16	ENST00000548219.5:ENST00000550131.5:ENST00000547141.5:ENST00000546469.5:ENST00000286800.8:ENST00000399921.5:ENST00000548467.1:ENST00000451655.5:ENST00000447177.5:ENST00000435072.1	protein_coding	protein_coding	protein_coding	protein_coding	2	35	2	2.38219	2.562955	2.74372	0.045456	0.0153007	0.149888	0.108569
chr22	20801572	20801672	7559099	0	-	0.47	(0.44,0.476]	chr22	773140	2	SS5_PROX	SS5_PROX:INTRON	PI4KA	ENSG00000241973.11	ENST00000255882.11:ENST00000485963.5:ENST00000485950.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	35	2	2.38219	2.562955	2.74372	0.045456	0.0153007	0.149888	0.108569
chr6	13692189	13692289	3059029	0	-	0.45	(0.44,0.476]	chr6	284542	330	INTRON	INTRON	RANBP9	ENSG00000010017.13	ENST00000011619.6	protein_coding	protein_coding	protein_coding	protein_coding	2	35	2	2.38219	2.562955	2.74372	0.045456	0.0153007	0.149888	0.108569
chr8	11828961	11829059	3702796	0	+	0.387755	(0.378,0.408]	chr8	343519	24	INTRON	INTRON	FDFT1	ENSG00000079459.13	ENST00000538689.4:ENST00000615631.4:ENST00000618539.4:ENST00000623368.3:ENST00000446331.6:ENST00000443614.6:ENST00000220584.9:ENST00000525607.5:ENST00000525283.5:ENST00000529464.5:ENST00000525900.5:ENST00000528812.5:ENST00000622850.2:ENST00000530664.5:ENST00000525954.5:ENST00000532266.5:ENST00000528643.5:ENST00000525777.5:ENST00000528729.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	110	2	1.85968	2.562935	3.26619	0.0075228099999999996	3.62021e-4	0.0773151	0.0176126
chr11	75453754	75453849	4990368	0	-	0.336842	(0.32,0.35]	chr11	471572	4	INTRON	INTRON	GDPD5	ENSG00000158555.15	ENST00000336898.8:ENST00000529721.5:ENST00000533784.5:ENST00000527820.5:ENST00000443276.6:ENST00000527322.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	55	2	1.99307	2.56292	3.13277	0.04271	0.00458313	0.148082	0.0622676
chr16	30717376	30717475	6338846	0	+	0.343434	(0.32,0.35]	chr16	607790	5	INTRON	INTRON	SRCAP	ENSG00000080603.17	ENST00000262518.9:ENST00000395059.6:ENST00000483083.3	protein_coding	protein_coding	protein_coding	protein_coding	3	55	2	1.99307	2.56292	3.13277	0.04271	0.00458313	0.148082	0.0622676
chr22	20724594	20724694	7558291	0	-	0.35	(0.32,0.35]	chr22	772994	27	INTRON	INTRON	PI4KA	ENSG00000241973.11	ENST00000255882.11:ENST00000477245.5:ENST00000466772.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	55	2	1.99307	2.56292	3.13277	0.04271	0.00458313	0.148082	0.0622676
chr3	9410819	9410919	1359016	0	+	0.27	[0,0.28]	chr3	142655	125	INTRON	INTRON	SETD5	ENSG00000168137.20	ENST00000402198.7:ENST00000431285.5:ENST00000683012.1:ENST00000463180.5:ENST00000478475.5:ENST00000415650.5:ENST00000682536.1:ENST00000663774.1:ENST00000665872.1:ENST00000666307.1:ENST00000693430.1:ENST00000691925.1:ENST00000684606.1:ENST00000691175.1:ENST00000688835.1:ENST00000683262.1:ENST00000443339.5:ENST00000406341.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	196	2	2.54182	2.5629	2.58398	0.00239612	6.41204e-4	0.0440612	0.0228915
chr1	171538871	171538971	253764	0	+	0.49	(0.476,0.515]	chr1	30174	10	INTRON	INTRON	PRRC2C	ENSG00000117523.18	ENST00000647382.2:ENST00000367742.7:ENST00000338920.8:ENST00000426496.6	protein_coding	protein_coding	protein_coding	protein_coding	3	47	2	2.05154	2.56288	3.07422	0.0336015	0.00506023	0.134145	0.0646039
chr15	67073797	67073896	6051927	0	+	0.50505	(0.476,0.515]	chr15	576256	55	INTRON	INTRON	SMAD3	ENSG00000166949.17	ENST00000559460.5:ENST00000327367.9:ENST00000679624.1	protein_coding	protein_coding	protein_coding	protein_coding	3	47	2	2.05154	2.56288	3.07422	0.0336015	0.00506023	0.134145	0.0646039
chr16	212067	212167	6426014	0	-	0.48	(0.476,0.515]	chr16	617437	24	INTRON	INTRON	LUC7L	ENSG00000007392.17	ENST00000337351.8:ENST00000426094.5:ENST00000397783.5:ENST00000629543.2:ENST00000490762.5:ENST00000293872.13:ENST00000419516.5:ENST00000397780.5:ENST00000418978.5:ENST00000430864.5:ENST00000443357.5:ENST00000494366.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	47	2	2.05154	2.56288	3.07422	0.0336015	0.00506023	0.134145	0.0646039
chr11	63628626	63628725	4962386	0	-	0.454545	(0.44,0.476]	chr11	467121	47	UTR3	UTR3:EXON_MRNA	ATL3	ENSG00000184743.13	ENST00000398868.8	protein_coding	protein_coding	protein_coding	protein_coding	2	35	2	2.46135	2.56284	2.66433	0.0374637	0.0194358	0.140008	0.119831
chr14	30724251	30724350	5676092	0	+	0.464646	(0.44,0.476]	chr14	540758	13	INTRON	INTRON	SCFD1	ENSG00000092108.22	ENST00000678760.1:ENST00000677690.1:ENST00000678124.1:ENST00000678716.1:ENST00000678402.1:ENST00000679153.1:ENST00000678516.1:ENST00000678802.1:ENST00000679096.1:ENST00000679102.1:ENST00000678475.1:ENST00000676509.1:ENST00000676750.1:ENST00000679165.1:ENST00000676658.1:ENST00000678399.1:ENST00000677413.1:ENST00000554437.6:ENST00000676834.1:ENST00000678858.1:ENST00000553693.6:ENST00000676914.1:ENST00000676465.1:ENST00000676812.1:ENST00000678669.1:ENST00000676520.1:ENST00000676876.1:ENST00000677617.1:ENST00000676954.1:ENST00000677456.1:ENST00000678735.1:ENST00000679342.1:ENST00000677176.1:ENST00000557076.6:ENST00000677637.1:ENST00000677974.1:ENST00000458591.7:ENST00000484733.6:ENST00000556768.5:ENST00000544052.6:ENST00000463622.6:ENST00000676674.1:ENST00000677340.1:ENST00000311943.11:ENST00000679075.1:ENST00000678396.1:ENST00000676473.1:ENST00000396629.6:ENST00000678579.1:ENST00000678104.1:ENST00000676817.1:ENST00000677833.1:ENST00000556486.5:ENST00000677334.1:ENST00000677576.1:ENST00000556256.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	35	2	2.46135	2.56284	2.66433	0.0374637	0.0194358	0.140008	0.119831
chr20	32549386	32549485	7326561	0	-	0.444444	(0.44,0.476]	chr20	746144	1	INTRON	INTRON	NOL4L	ENSG00000197183.15	ENST00000621426.7:ENST00000201961.6:ENST00000485364.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	35	2	2.46135	2.56284	2.66433	0.0374637	0.0194358	0.140008	0.119831
chr11	28095779	28095875	4938323	0	-	0.489583	(0.476,0.515]	chr11	462517	6	INTRON	INTRON	KIF18A	ENSG00000121621.7	ENST00000263181.7:ENST00000533466.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	87	2	2.12058	2.562825	3.00507	0.00686728	8.38796e-4	0.071646	0.0263691
chr12	64408677	64408775	5152922	0	+	0.489796	(0.476,0.515]	chr12	487721	30	INTRON	INTRON	XPOT	ENSG00000184575.12	ENST00000332707.10:ENST00000540203.5	protein_coding	protein_coding	protein_coding	protein_coding	3	48	2	1.72558	2.562805	3.40003	0.0767648	0.00139193	0.196164	0.0341261
chr9	131181889	131181988	4216208	0	+	0.313131	(0.28,0.32]	chr9	386630	31	INTRON	INTRON	NUP214	ENSG00000126883.19	ENST00000695497.1:ENST00000695498.1:ENST00000695496.1:ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000525980.5:ENST00000526346.5:ENST00000531929.5:ENST00000651334.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	12	173	2	1.55458	2.562805	3.57103	0.0134111	1.43295e-4	0.101133	0.010957100000000001
chr16	24786439	24786539	6329787	0	+	0.56	(0.515,0.57]	chr16	605958	76	INTRON	INTRON	TNRC6A	ENSG00000090905.19	ENST00000395799.8:ENST00000315183.11:ENST00000491718.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	49	2	1.75372	2.5624849999999997	3.37125	0.0386904	0.00136343	0.14279	0.0339121
chr9	96966073	96966173	4298513	0	-	0.56	(0.515,0.57]	chr9	395256	68	INTRON	INTRON	MFSD14C	ENSG00000196312.15	ENST00000647176.1:ENST00000645073.1:ENST00000637076.1:ENST00000637099.1:ENST00000637864.1:ENST00000652726.1:ENST00000637811.1:ENST00000650909.1	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript:transcribed_unprocessed_pseudogene	4	49	2	1.75372	2.5624849999999997	3.37125	0.0386904	0.00136343	0.14279	0.0339121
chr1	196673262	196673361	286202	0	+	0.383838	(0.378,0.408]	chr1	32898	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CFH:ENSG00000289697	ENSG00000000971.17:ENSG00000289697.1	ENST00000359637.3:ENST00000695968.1:ENST00000696032.1:ENST00000695970.1:ENST00000695971.1:ENST00000695972.1:ENST00000470918.2:ENST00000695969.1:ENST00000695973.1:ENST00000695974.1:ENST00000696033.1:ENST00000695975.1:ENST00000695976.1:ENST00000695981.1:ENST00000695980.1:ENST00000695978.1:ENST00000695979.1:ENST00000696026.1:ENST00000696027.1:ENST00000696028.1:ENST00000696029.1:ENST00000695983.1:ENST00000696025.1:ENST00000696024.1:ENST00000696023.1:ENST00000696019.1:ENST00000696020.1:ENST00000696021.1:ENST00000696022.1:ENST00000696018.1:ENST00000695984.1:ENST00000367429.9:ENST00000696030.1:ENST00000630130.2:ENST00000696031.1:ENST00000496761.2:ENST00000695986.1:ENST00000695987.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	92	2	1.67942	2.562465	3.44551	0.0336706	8.68398e-5	0.134145	0.00783027
chr7	128595317	128595417	3408002	0	+	0.56	(0.515,0.57]	chr7	318364	29	INTRON	INTRON	ENSG00000280828:ENSG00000242588	ENSG00000280828.1:ENSG00000242588.6	ENST00000479267.2:ENST00000605862.5	lncRNA	lncRNA	lncRNA:unprocessed_pseudogene	lncRNA:unprocessed_pseudogene	4	49	2	1.811	2.56244	3.31388	0.0325989	0.00174704	0.133687	0.0386026
chrX	123610393	123610417	7877781	0	-	0.25	[0,0.28]	chrX	802394	1	SS3_PROX	SS3_PROX:INTRON	THOC2	ENSG00000125676.20	ENST00000448128.5:ENST00000245838.13:ENST00000441692.5:ENST00000492203.1:ENST00000497887.5:ENST00000618150.4:ENST00000432353.5:ENST00000455053.5:ENST00000355725.8:ENST00000416618.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	94	2	2.0412	2.5624000000000002	3.0836	0.0106194	0.00940284	0.0914726	0.0817766
chr5	110754640	110754736	2451009	0	+	0.375	(0.35,0.378]	chr5	234748	15	EXON_LNCRNA	EXON_LNCRNA:INTRON	SLC25A46	ENSG00000164209.17	ENST00000508781.5:ENST00000513807.5:ENST00000355943.8:ENST00000447245.6:ENST00000504098.1:ENST00000502462.6:ENST00000513706.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	51	2	2.2877	2.562395	2.83709	0.0155765	0.01435	0.109411	0.0966737
chr7	128585573	128585672	3407904	0	+	0.292929	(0.28,0.32]	chr7	318358	51	INTRON	INTRON	ENSG00000280828:ENSG00000242588	ENSG00000280828.1:ENSG00000242588.6	ENST00000479267.2:ENST00000605862.5	lncRNA	lncRNA	lncRNA:unprocessed_pseudogene	lncRNA:unprocessed_pseudogene	3	60	2	1.81582	2.5623750000000003	3.30893	0.068122	0.00260504	0.184298	0.0470772
chr3	186546757	186546856	1887285	0	-	0.494949	(0.476,0.515]	chr3	188747	8	UTR3	UTR3:EXON_MRNA	TBCCD1	ENSG00000113838.13	ENST00000338733.10:ENST00000424280.5:ENST00000446782.5	protein_coding	protein_coding	protein_coding	protein_coding	5	77	2	2.44441	2.5623199999999997	2.68023	0.0036718	0.00353671	0.0546236	0.0535094
chr6	135208321	135208421	2962444	0	+	0.47	(0.44,0.476]	chr6	278661	45	INTRON	INTRON	MYB	ENSG00000118513.20	ENST00000341911.10:ENST00000442647.7:ENST00000316528.12:ENST00000616088.4:ENST00000339290.9:ENST00000367812.6:ENST00000463282.6:ENST00000525477.5:ENST00000533837.5:ENST00000367814.8:ENST00000525369.5:ENST00000438901.6:ENST00000525514.5:ENST00000526320.5:ENST00000526889.5:ENST00000529586.5:ENST00000531519.5:ENST00000533808.5:ENST00000528343.5:ENST00000524588.5:ENST00000525002.5:ENST00000525940.5:ENST00000526187.5:ENST00000526565.5:ENST00000528015.5:ENST00000528140.5:ENST00000528345.5:ENST00000528774.5:ENST00000529262.5:ENST00000531634.5:ENST00000531737.5:ENST00000533384.5:ENST00000533624.5:ENST00000534044.5:ENST00000534121.5:ENST00000531845.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	134	2	2.46359	2.56231	2.66103	8.8879e-4	4.47456e-4	0.0274708	0.0191768
chr18	36795405	36795505	6964035	0	-	0.49	(0.476,0.515]	chr18	689210	14	UTR3	UTR3:EXON_MRNA:INTRON	TPGS2	ENSG00000134779.15	ENST00000590258.2:ENST00000590652.5:ENST00000614939.4:ENST00000587129.5:ENST00000610723.4:ENST00000590842.5:ENST00000591906.5:ENST00000587382.5:ENST00000334295.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	48	2	2.31726	2.562275	2.80729	0.015077	0.0126008	0.0994339	0.0980703
chr19	15302943	15303043	7147110	0	-	0.5	(0.476,0.515]	chr19	721965	226	INTRON	INTRON	BRD4	ENSG00000141867.19	ENST00000679869.1:ENST00000360016.9:ENST00000594841.5:ENST00000597315.5:ENST00000601941.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	72	2	1.87849	2.562225	3.24596	0.00992862	0.00322919	0.0877296	0.0507087
chr1	113802228	113802327	525846	0	-	0.363636	(0.35,0.378]	chr1	61864	38	INTRON	INTRON	RSBN1	ENSG00000081019.14	ENST00000261441.9:ENST00000612242.4:ENST00000476412.5:ENST00000615321.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	38	2	2.39939	2.562185	2.72498	0.0458078	0.0168499	0.149888	0.11068
chr6	157941121	157941180	3016966	0	+	0.355932	(0.35,0.378]	chr6	281455	1	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SNX9	ENSG00000130340.17	ENST00000680863.1:ENST00000679814.1:ENST00000680464.1:ENST00000681186.1:ENST00000679732.1:ENST00000681183.1:ENST00000681534.1:ENST00000681651.1:ENST00000680089.1:ENST00000680078.1:ENST00000680974.1:ENST00000681138.1:ENST00000392185.8:ENST00000679790.1:ENST00000680495.1:ENST00000679691.1:ENST00000681881.1:ENST00000681469.1:ENST00000680680.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	38	2	2.39939	2.562185	2.72498	0.0458078	0.0168499	0.149888	0.11068
chr7	101982399	101982499	3368018	0	+	0.36	(0.35,0.378]	chr7	315233	224	INTRON	INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000497815.5:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000558469.5:ENST00000560541.5:ENST00000558836.5:ENST00000606749.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	38	2	2.39939	2.562185	2.72498	0.0458078	0.0168499	0.149888	0.11068
chr6	44247295	44247395	2872830	0	+	0.5	(0.476,0.515]	chr6	272576	1	SS5_PROX	SS5_PROX:INTRON	HSP90AB1	ENSG00000096384.20	ENST00000620073.4:ENST00000353801.7:ENST00000371646.10	protein_coding	protein_coding	protein_coding	protein_coding	32	470	2	2.55992	2.562145	2.56437	3.14796e-5	1.49674e-5	0.00449886	0.00311197
chr7	111284093	111284193	3621323	0	-	0.45	(0.44,0.476]	chr7	337093	3202	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	66	2	1.76195	2.56213	3.36231	0.0252608	0.00161678	0.12011	0.0369204
chr7	149619103	149619203	3672567	0	-	0.3	(0.28,0.32]	chr7	340834	551	INTRON	INTRON	ZNF767P	ENSG00000133624.14	ENST00000463567.5:ENST00000472212.5:ENST00000684939.1:ENST00000690388.1:ENST00000486492.5:ENST00000481762.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	3	60	2	2.09794	2.56213	3.02632	0.0340483	0.0071944	0.134863	0.0756118
chr2	38337284	38337384	1098942	0	-	0.45	(0.44,0.476]	chr2	117856	179	INTRON	INTRON	ATL2	ENSG00000119787.14	ENST00000378954.9:ENST00000406122.5:ENST00000405384.6:ENST00000402054.5:ENST00000419554.6:ENST00000651368.1:ENST00000452935.6:ENST00000449130.5:ENST00000443098.5:ENST00000456736.5:ENST00000474535.2:ENST00000472097.1:ENST00000451483.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	57	2	1.66462	2.562095	3.45957	0.0520247	0.00106385	0.159508	0.0300133
chr1	155819220	155819318	564062	0	-	0.540816	(0.515,0.57]	chr1	67348	26	INTRON	INTRON	GON4L	ENSG00000116580.20	ENST00000368331.6:ENST00000615926.4:ENST00000437809.5:ENST00000271883.9:ENST00000361040.9:ENST00000622608.2:ENST00000471341.5:ENST00000467009.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	41	2	2.21273	2.562065	2.9114	0.0196151	0.00826019	0.109486	0.0813266
chr11	105515654	105515741	5030379	0	-	0.54023	(0.515,0.57]	chr11	474026	3	UTR5	UTR5:EXON_MRNA:INTRON	CARD18	ENSG00000255501.3	ENST00000649856.1:ENST00000528811.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	41	2	2.21273	2.562065	2.9114	0.0196151	0.00826019	0.109486	0.0813266
chr5	69370704	69370797	2380911	0	+	0.451613	(0.44,0.476]	chr5	229348	1	UTR5	UTR5:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RAD17	ENSG00000152942.19	ENST00000514066.6:ENST00000361732.6:ENST00000507927.5:ENST00000509734.5:ENST00000354868.10:ENST00000511349.1:ENST00000521422.5:ENST00000504177.5:ENST00000354312.7:ENST00000345306.10:ENST00000616683.4:ENST00000512785.5:ENST00000506564.5:ENST00000305138.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	57	2	1.81283	2.561965	3.3111	0.0343005	0.0020006	0.135641	0.0412555
chr16	18880893	18880989	6457642	0	-	0.427083	(0.408,0.44]	chr16	622833	8	INTRON	INTRON	SMG1	ENSG00000157106.18	ENST00000446231.7:ENST00000565324.5:ENST00000561947.5:ENST00000565224.5	protein_coding	protein_coding	protein_coding	protein_coding	8	106	2	1.89859	2.5619449999999997	3.2253	0.00624957	4.07735e-4	0.0719778	0.0185763
chr17	22092507	22092607	6578588	0	+	0.58	(0.57,1]	chr17	639556	12	INTRON	INTRON	UBBP4	ENSG00000263563.7	ENST00000648259.1:ENST00000688301.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	5	40	2	2.46083	2.56194	2.66305	0.00327879	0.00255312	0.0509077	0.0466386
chr1	167937851	167937951	248500	0	+	0.32	(0.28,0.32]	chr1	29536	2	INTRON	INTRON	DCAF6	ENSG00000143164.16	ENST00000450548.5:ENST00000470919.5:ENST00000432587.6:ENST00000367843.7:ENST00000470721.5:ENST00000367840.4:ENST00000312263.10:ENST00000455334.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	82	2	2.00031	2.561815	3.12332	0.0110488	0.00698537	0.0928193	0.0718189
chr1	88691023	88691123	155836	0	+	0.33	(0.32,0.35]	chr1	17045	60	INTRON	INTRON	PKN2	ENSG00000065243.20	ENST00000316005.11:ENST00000370521.8:ENST00000370513.9	protein_coding	protein_coding	protein_coding	protein_coding	4	67	2	1.8903	2.561805	3.23331	0.0298043	0.00315414	0.129138	0.0515261
chr7	127734097	127734197	3403231	0	+	0.45	(0.44,0.476]	chr7	318134	123	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000468166.5:ENST00000465900.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	105	2	1.92564	2.561745	3.19785	0.00555103	4.51048e-4	0.0675005	0.0196417
chr16	208941	209033	6425982	0	-	0.467391	(0.44,0.476]	chr16	617436	4	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	LUC7L	ENSG00000007392.17	ENST00000337351.8:ENST00000426094.5:ENST00000397783.5:ENST00000629543.2:ENST00000490762.5:ENST00000293872.13:ENST00000464711.5:ENST00000419516.5:ENST00000397780.5:ENST00000418978.5:ENST00000430864.5:ENST00000443357.5:ENST00000494366.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	156	2	1.94282	2.561665	3.18051	0.00464928	2.04793e-5	0.0600108	0.00351769
chr18	8630890	8630990	6868435	0	+	0.52	(0.515,0.57]	chr18	680460	55	INTRON	INTRON	RAB12	ENSG00000206418.5	ENST00000649141.2	protein_coding	protein_coding	protein_coding	protein_coding	5	65	2	2.15866	2.5616649999999996	2.96467	0.0100547	8.94279e-4	0.0848452	0.0273458
chrX	121251411	121251511	7715704	0	+	0.53	(0.515,0.57]	chrX	789390	652	INTRON	INTRON	ENSG00000286163	ENSG00000286163.1	ENST00000651788.1	lncRNA	lncRNA	lncRNA	lncRNA	5	65	2	2.15866	2.5616649999999996	2.96467	0.0100547	8.94279e-4	0.0848452	0.0273458
chr10	102154026	102154126	4512517	0	+	0.45	(0.44,0.476]	chr10	415623	11	INTRON	INTRON	NOLC1	ENSG00000166197.17	ENST00000405356.5:ENST00000605788.6:ENST00000464969.6:ENST00000603946.5:ENST00000488254.6:ENST00000461421.5:ENST00000476468.5:ENST00000370007.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	67	2	2.21079	2.561655	2.91252	0.0194581	0.00164027	0.119831	0.0369207
chr8	140745961	140746060	4077485	0	-	0.343434	(0.32,0.35]	chr8	370408	8	INTRON	INTRON	PTK2	ENSG00000169398.20	ENST00000696786.1:ENST00000522684.5:ENST00000395218.3:ENST00000519654.5:ENST00000521059.5:ENST00000517887.5:ENST00000519465.5:ENST00000519993.5:ENST00000340930.7:ENST00000523539.5:ENST00000519419.5:ENST00000524202.5:ENST00000521986.5:ENST00000521250.5:ENST00000521981.5:ENST00000521029.5:ENST00000520151.5:ENST00000523670.5:ENST00000519024.5:ENST00000523746.5:ENST00000510126.2:ENST00000523474.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	102	2	1.94669	2.561655	3.1766200000000002	0.0154073	4.35341e-4	0.100659	0.0187673
chr10	73743564	73743659	4652084	0	-	0.294737	(0.28,0.32]	chr10	428252	7	EXON_MRNA	EXON_MRNA	ENSG00000279088	ENSG00000279088.1	ENST00000625041.1	TEC	TEC	TEC	TEC	10	187	2	2.31894	2.56158	2.80422	0.0011322700000000001	5.71414e-4	0.0308465	0.0220865
chr19	1799056	1799155	7113311	0	-	0.484848	(0.476,0.515]	chr19	714742	4	UTR3	UTR3:EXON_MRNA:INTRON	ATP8B3	ENSG00000130270.16	ENST00000310127.10:ENST00000531925.5:ENST00000525591.5:ENST00000526092.6:ENST00000533107.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	119	2	2.28812	2.56157	2.83502	0.00344676	1.72457e-4	0.0517761	0.0113919
chr1	151620646	151620746	225806	0	+	0.44	(0.408,0.44]	chr1	25862	58	INTRON	INTRON	SNX27	ENSG00000143376.14	ENST00000642376.1:ENST00000368843.8:ENST00000458013.7:ENST00000368841.7:ENST00000642479.1:ENST00000642349.1:ENST00000643179.1:ENST00000643814.1:ENST00000642582.1:ENST00000644970.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	137	2	2.21565	2.56156	2.90747	9.25633e-4	4.77325e-4	0.0278442	0.0202392
chr19	10655495	10655585	7013223	0	+	0.466667	(0.44,0.476]	chr19	696754	1	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	ILF3	ENSG00000129351.17	ENST00000449870.5:ENST00000587928.5:ENST00000407004.7:ENST00000589998.5:ENST00000589600.5:ENST00000589283.5:ENST00000590009.5:ENST00000593199.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	79	2	2.03266	2.561525	3.09039	0.0155853	7.4601e-4	0.109411	0.0251072
chr10	125065120	125065220	4713380	0	-	0.54	(0.515,0.57]	chr10	434897	256	INTRON	INTRON	CTBP2	ENSG00000175029.17	ENST00000337195.9:ENST00000411419.6:ENST00000494626.6:ENST00000531469.5:ENST00000460976.5:ENST00000476817.1:ENST00000530884.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	65	2	2.31902	2.56151	2.804	0.00493032	0.00215855	0.0646039	0.0417866
chr7	138481195	138481295	3434850	0	+	0.46	(0.44,0.476]	chr7	319959	195	INTRON	INTRON	TRIM24	ENSG00000122779.18	ENST00000343526.9:ENST00000415680.6:ENST00000497516.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	63	2	2.38519	2.5615	2.73781	0.012193	0.00276493	0.0910127	0.04867
chr17	17230337	17230432	6736003	0	-	0.557895	(0.515,0.57]	chr17	660923	10	INTRON	INTRON	FLCN	ENSG00000154803.13	ENST00000285071.9:ENST00000389169.9:ENST00000417064.1:ENST00000389171.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	43	2	2.34087	2.5614749999999997	2.78208	0.0469761	0.00209264	0.151917	0.0424943
chr10	70676093	70676192	4447359	0	+	0.434343	(0.408,0.44]	chr10	410366	7	INTRON	INTRON	ADAMTS14	ENSG00000138316.11	ENST00000373207.2:ENST00000373208.5	protein_coding	protein_coding	protein_coding	protein_coding	5	77	2	2.29777	2.56144	2.82511	0.0067764	0.00189528	0.0711802	0.0402736
chr2	108774636	108774735	847985	0	+	0.282828	(0.28,0.32]	chr2	94899	12	INTRON	INTRON	RANBP2	ENSG00000153201.16	ENST00000283195.11	protein_coding	protein_coding	protein_coding	protein_coding	4	73	2	1.9021	2.56142	3.22074	0.0304779	0.00362783	0.130699	0.055479
chr20	35005294	35005394	7332012	0	-	0.56	(0.515,0.57]	chr20	746882	2	SS5_PROX	SS5_PROX:INTRON	TRPC4AP	ENSG00000100991.12	ENST00000252015.3:ENST00000451813.6	protein_coding	protein_coding	protein_coding	protein_coding	7	89	2	2.261	2.56142	2.86184	0.00333544	3.55958e-4	0.0512081	0.0168968
chr4	70968630	70968730	1971171	0	+	0.5	(0.476,0.515]	chr4	197590	92	INTRON	INTRON	MOB1B	ENSG00000173542.9	ENST00000502869.5:ENST00000509041.5:ENST00000309395.7:ENST00000396051.2:ENST00000511449.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	65	2	2.07116	2.56134	3.05152	0.00731321	0.0064848	0.076234	0.0699952
chr4	73231704	73231804	2160556	0	-	0.42	(0.408,0.44]	chr4	212799	87	INTRON	INTRON	ANKRD17	ENSG00000132466.20	ENST00000358602.9:ENST00000558247.5:ENST00000330838.10:ENST00000561029.1	protein_coding	protein_coding	protein_coding	protein_coding	5	66	2	1.40374	2.5612399999999997	3.71874	0.0721345	3.17998e-4	0.187433	0.0159645
chr2	61214794	61214894	1127907	0	-	0.37	(0.35,0.378]	chr2	121156	1	SS3_PROX	SS3_PROX:INTRON	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000411912.5:ENST00000463046.5:ENST00000476716.5:ENST00000472689.5:ENST00000472706.5:ENST00000490527.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	39	2	2.39746	2.561215	2.72497	0.041314	0.0198266	0.161534	0.109608
chr21	36042185	36042284	7458531	0	-	0.373737	(0.35,0.378]	chr21	759977	4	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	SETD4	ENSG00000185917.14	ENST00000399212.5:ENST00000332131.9:ENST00000481477.5:ENST00000399215.5:ENST00000487297.5:ENST00000469482.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	39	2	2.39746	2.561215	2.72497	0.041314	0.0198266	0.161534	0.109608
chr1	1802132	1802231	361938	0	-	0.323232	(0.32,0.35]	chr1	42263	81	INTRON	INTRON	GNB1	ENSG00000078369.18	ENST00000610897.4:ENST00000615252.4:ENST00000378609.9:ENST00000471354.1:ENST00000439272.6:ENST00000434686.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	55	2	1.88909	2.5612	3.23331	0.0553737	0.00315414	0.165463	0.0515261
chr7	127926561	127926661	3405163	0	+	0.5	(0.476,0.515]	chr7	318161	214	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000465900.5:ENST00000486037.1:ENST00000484767.5:ENST00000492840.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	56	2	2.01953	2.5610850000000003	3.10264	0.0163662	0.00543163	0.109586	0.0645052
chr21	46259853	46259941	7471154	0	-	0.386364	(0.378,0.408]	chr21	761633	4	INTRON	INTRON	MCM3AP	ENSG00000160294.11	ENST00000397708.1:ENST00000291688.6:ENST00000486937.5:ENST00000496607.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	101	2	1.67662	2.561065	3.44551	0.0243251	8.68398e-5	0.12011	0.00783027
chr4	32199895	32199994	1943453	0	+	0.343434	(0.32,0.35]	chr4	194753	73	INTRON	INTRON	LINC02506	ENSG00000251129.3	ENST00000665582.2:ENST00000667252.2:ENST00000660373.2:ENST00000684849.1:ENST00000655951.1	lncRNA	lncRNA	lncRNA	lncRNA	3	55	2	2.04237	2.5610600000000003	3.07975	0.0375542	0.00554235	0.140222	0.0674105
chr1	160335822	160335914	572245	0	-	0.380435	(0.378,0.408]	chr1	69366	1	INTRON	INTRON	COPA	ENSG00000122218.17	ENST00000241704.8:ENST00000696204.1:ENST00000696203.1:ENST00000649963.1:ENST00000696208.1:ENST00000696207.1:ENST00000368069.7:ENST00000647693.1:ENST00000649787.1:ENST00000650154.1:ENST00000647799.1:ENST00000648805.1:ENST00000647683.1:ENST00000649231.1:ENST00000696209.1:ENST00000696210.1:ENST00000696211.1:ENST00000696212.1:ENST00000696214.1:ENST00000696213.1:ENST00000696215.1:ENST00000541366.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	102	2	1.55037	2.56105	3.57173	0.0365151	4.19615e-5	0.138959	0.00524985
chrX	44992485	44992585	7649798	0	+	0.43	(0.408,0.44]	chrX	782744	154	INTRON	INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000675440.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000621147.5:ENST00000475233.1:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	66	2	1.66104	2.56104	3.46104	0.0349715	0.00105552	0.13747500000000001	0.0299229
chr20	63874316	63874415	7300778	0	+	0.444444	(0.44,0.476]	chr20	743102	1	INTRON	INTRON	TPD52L2	ENSG00000101150.18	ENST00000611972.4:ENST00000615907.4:ENST00000369927.8:ENST00000346249.9:ENST00000348257.9:ENST00000352482.8:ENST00000351424.8:ENST00000217121.9:ENST00000358548.4	protein_coding	protein_coding	protein_coding	protein_coding	7	104	2	2.53021	2.5610299999999997	2.59185	0.00200767	8.87528e-4	0.0408395	0.0271952
chr1	67686987	67687087	142286	0	+	0.31	(0.28,0.32]	chr1	15924	4	SS5_PROX	SS5_PROX:INTRON	GADD45A	ENSG00000116717.13	ENST00000370986.9:ENST00000370985.4:ENST00000650283.1:ENST00000648742.1:ENST00000617962.2	protein_coding	protein_coding	protein_coding	protein_coding	2	44	2	2.2609	2.5610150000000003	2.86113	0.0671429	0.0122675	0.183051	0.0969406
chr1	35880031	35880130	70605	0	+	0.373737	(0.35,0.378]	chr1	9024	98	INTRON	INTRON	AGO1	ENSG00000092847.13	ENST00000373206.5	protein_coding	protein_coding	protein_coding	protein_coding	4	69	2	2.28125	2.56091	2.84057	0.0182271	0.00189462	0.107842	0.0402736
chr6	34843935	34844035	2848922	0	+	0.38	(0.378,0.408]	chr6	269159	72	INTRON	INTRON	UHRF1BP1	ENSG00000065060.18	ENST00000192788.6	protein_coding	protein_coding	protein_coding	protein_coding	5	68	2	1.43665	2.56091	3.68517	0.0669652	3.90172e-4	0.183051	0.0177751
chr16	16509115	16509215	6310953	0	+	0.45	(0.44,0.476]	chr16	604098	91	INTRON	INTRON	ENSG00000260126	ENSG00000260126.2	ENST00000567465.2	lncRNA	lncRNA	lncRNA	lncRNA	6	91	2	2.38636	2.560905	2.73545	0.0047296	7.908e-4	0.0600445	0.0258324
chr1	1729858	1729957	361273	0	-	0.545455	(0.515,0.57]	chr1	42112	41	INTRON	INTRON	ENSG00000268575:SLC35E2A	ENSG00000268575.1:ENSG00000215790.8	ENST00000598846.1:ENST00000647043.1	lncRNA	lncRNA	lncRNA:transcribed_unprocessed_pseudogene	lncRNA:processed_transcript	11	141	2	2.20482	2.5609	2.91698	0.00129351	4.94351e-5	0.0333764	0.00608778
chr16	89815776	89815876	6544824	0	-	0.58	(0.57,1]	chr16	634631	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	FANCA	ENSG00000187741.16	ENST00000561667.2:ENST00000389301.8:ENST00000568369.6:ENST00000564475.6:ENST00000696275.1:ENST00000696287.1:ENST00000696286.1:ENST00000696291.1:ENST00000696276.1:ENST00000567205.2:ENST00000567284.7:ENST00000696277.1:ENST00000696292.1:ENST00000563767.2:ENST00000567621.6:ENST00000696288.1:ENST00000696293.1:ENST00000566889.5:ENST00000389302.7:ENST00000696294.1:ENST00000696295.1:ENST00000563673.5:ENST00000543736.5:ENST00000534992.5:ENST00000565582.5:ENST00000696296.1:ENST00000563513.1:ENST00000567883.5:ENST00000567943.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	31	2	2.09207	2.56087	3.02967	0.0121228	0.00471306	0.090965	0.0631419
chr16	18808586	18808685	6456837	0	-	0.323232	(0.32,0.35]	chr16	622573	39	UTR3	UTR3:EXON_MRNA	SMG1	ENSG00000157106.18	ENST00000446231.7:ENST00000565324.5	protein_coding	protein_coding	protein_coding	protein_coding	6	84	2	1.8807	2.560785	3.24087	0.0106415	0.00420518	0.0915714	0.0572185
chr22	19098473	19098572	7551775	0	-	0.393939	(0.378,0.408]	chr22	771903	86	INTRON	INTRON	DGCR2	ENSG00000070413.20	ENST00000537045.5:ENST00000545799.5:ENST00000263196.12:ENST00000389262.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	68	2	1.60295	2.560775	3.5186	0.0422859	8.45009e-4	0.148082	0.0263813
chr1	162590711	162590811	238616	0	+	0.26	[0,0.28]	chr1	28739	2	SS5_PROX	SS5_PROX:INTRON	UAP1	ENSG00000117143.14	ENST00000367925.6:ENST00000367926.9	protein_coding	protein_coding	protein_coding	protein_coding	12	246	2	2.35482	2.560735	2.76665	9.65957e-4	6.3759e-4	0.0282401	0.022847
chr19	2756433	2756513	7116473	0	-	0.2875	(0.28,0.32]	chr19	715452	1	INTRON	INTRON	SGTA	ENSG00000104969.11	ENST00000221566.7:ENST00000678109.1:ENST00000676984.1:ENST00000677513.1:ENST00000676943.1:ENST00000679132.1:ENST00000677731.1:ENST00000679138.1:ENST00000677562.1:ENST00000678595.1:ENST00000677754.1:ENST00000676611.1:ENST00000677149.1:ENST00000591984.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	44	2	2.51488	2.56072	2.60656	0.0380957	0.0256827	0.141678	0.133676
chr22	28691671	28691769	7572979	0	-	0.316327	(0.28,0.32]	chr22	774309	21	INTRON	INTRON	CHEK2	ENSG00000183765.23	ENST00000416671.5:ENST00000348295.7:ENST00000404276.6:ENST00000425190.7:ENST00000402731.6:ENST00000464581.6:ENST00000456369.5:ENST00000434810.5:ENST00000648295.1:ENST00000649563.1:ENST00000405598.5:ENST00000382580.6:ENST00000650281.1:ENST00000417588.5:ENST00000433728.5:ENST00000448511.5:ENST00000403642.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	44	2	2.51488	2.56072	2.60656	0.0380957	0.0256827	0.141678	0.133676
chr3	180922383	180922482	1568702	0	+	0.30303	(0.28,0.32]	chr3	162365	64	INTRON	INTRON	FXR1	ENSG00000114416.18	ENST00000469882.5:ENST00000484790.5:ENST00000465551.5:ENST00000305586.11:ENST00000475315.5:ENST00000491674.1:ENST00000357559.9:ENST00000468861.5:ENST00000491062.5:ENST00000479176.5:ENST00000445140.6:ENST00000472339.5:ENST00000484958.5:ENST00000480918.5:ENST00000484042.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	44	2	2.51488	2.56072	2.60656	0.0380957	0.0256827	0.141678	0.133676
chr10	102163022	102163117	4512628	0	+	0.357895	(0.35,0.378]	chr10	415675	9	UTR3	UTR3:EXON_MRNA:INTRON	NOLC1	ENSG00000166197.17	ENST00000405356.5:ENST00000605788.6:ENST00000603946.5:ENST00000370007.5:ENST00000477977.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	110	2	2.17024	2.560645	2.95105	0.00397513	0.00115843	0.0549214	0.0313803
chr12	124783393	124783490	5445761	0	-	0.28866000000000003	(0.28,0.32]	chr12	521219	7	EXON_MRNA	EXON_MRNA:INTRON	SCARB1	ENSG00000073060.17	ENST00000339570.9:ENST00000261693.11:ENST00000679605.1:ENST00000681686.1:ENST00000680926.1:ENST00000680556.1:ENST00000680982.1:ENST00000680596.1:ENST00000681555.1:ENST00000681788.1:ENST00000415380.6:ENST00000681117.1:ENST00000681499.1:ENST00000545305.1:ENST00000538291.5:ENST00000546215.5:ENST00000535005.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	16	158	2	1.19783	2.560585	3.92334	0.0341429	3.47778e-4	0.146815	0.017378
chr16	70250787	70250885	6510072	0	-	0.5	(0.476,0.515]	chr16	630495	42	UTR3	UTR3:EXON_MRNA	EXOSC6	ENSG00000223496.3	ENST00000435634.3	protein_coding	protein_coding	protein_coding	protein_coding	6	89	2	1.87147	2.560535	3.2496	0.0157856	3.39435e-4	0.109464	0.0170719
chr17	28943305	28943405	6746148	0	-	0.49	(0.476,0.515]	chr17	662925	152	INTRON	INTRON	PHF12	ENSG00000109118.14	ENST00000332830.9:ENST00000577226.5:ENST00000582436.5:ENST00000378879.7:ENST00000268756.7:ENST00000583524.5:ENST00000483934.5:ENST00000584685.1:ENST00000582853.5:ENST00000584236.1:ENST00000583747.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	78	2	1.44561	2.560525	3.67544	0.0359862	5.51624e-4	0.152355	0.0216014
chr4	72568762	72568853	2158740	0	-	0.483516	(0.476,0.515]	chr4	212554	1	UTR5	UTR5:EXON_MRNA	ADAMTS3	ENSG00000156140.10	ENST00000286657.10:ENST00000622135.1	protein_coding	protein_coding	protein_coding	protein_coding	3	47	2	1.92984	2.560515	3.19119	0.0466474	0.00325748	0.151522	0.0524329
chr10	68756632	68756732	4442638	0	+	0.3	(0.28,0.32]	chr10	409665	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	CCAR1	ENSG00000060339.14	ENST00000630771.2:ENST00000543719.5:ENST00000541012.5:ENST00000265872.11:ENST00000539539.5:ENST00000543229.5:ENST00000536012.5:ENST00000543225.5:ENST00000540210.5:ENST00000483264.1:ENST00000479143.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	150	2	2.50071	2.560505	2.6203	0.00418869	4.02303e-4	0.0572071	0.0180218
chr16	23465895	23465995	6464116	0	-	0.39	(0.378,0.408]	chr16	623810	6	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	GGA2	ENSG00000103365.15	ENST00000309859.8:ENST00000567468.5	protein_coding	protein_coding	protein_coding	protein_coding	17	248	2	2.15875	2.560455	2.96216	7.53302e-4	1.75652e-5	0.0251179	0.00319082
chr10	68383597	68383697	4638912	0	-	0.37	(0.35,0.378]	chr10	426567	4	SS5_PROX	SS5_PROX:INTRON	RUFY2	ENSG00000204130.14	ENST00000466493.5:ENST00000602465.6:ENST00000388768.6:ENST00000399200.7:ENST00000454950.6:ENST00000472394.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	38	2	2.32443	2.56043	2.79643	0.0544216	0.013543	0.164972	0.101363
chr22	21590061	21590161	7481928	0	+	0.36	(0.35,0.378]	chr22	763232	213	INTRON	INTRON	UBE2L3	ENSG00000185651.16	ENST00000458578.6:ENST00000545681.2:ENST00000696046.1:ENST00000342192.9:ENST00000496722.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	38	2	2.32443	2.56043	2.79643	0.0544216	0.013543	0.164972	0.101363
chr5	72894299	72894396	2387927	0	+	0.371134	(0.35,0.378]	chr5	230468	2	INTRON	INTRON	TNPO1	ENSG00000083312.19	ENST00000680533.1:ENST00000337273.10:ENST00000680025.1:ENST00000523768.5:ENST00000681711.1:ENST00000679378.1:ENST00000506351.6:ENST00000605210.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	38	2	2.32443	2.56043	2.79643	0.0544216	0.013543	0.164972	0.101363
chr9	93541821	93541921	4158956	0	+	0.37	(0.35,0.378]	chr9	379180	91	INTRON	INTRON	FAM120A	ENSG00000048828.17	ENST00000277165.11:ENST00000427765.1	protein_coding	protein_coding	protein_coding	protein_coding	2	38	2	2.32443	2.56043	2.79643	0.0544216	0.013543	0.164972	0.101363
chr9	96769408	96769508	4297020	0	-	0.36	(0.35,0.378]	chr9	395138	54	INTRON	INTRON	ZNF510	ENSG00000081386.13	ENST00000223428.9:ENST00000375231.5:ENST00000374641.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	38	2	2.32443	2.56043	2.79643	0.0544216	0.013543	0.164972	0.101363
chr16	11776132	11776219	6445488	0	-	0.367816	(0.35,0.378]	chr16	620940	1	SS5_PROX	SS5_PROX:INTRON	ZC3H7A	ENSG00000122299.12	ENST00000396516.6:ENST00000355758.9:ENST00000571198.5:ENST00000576009.1:ENST00000575170.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	51	2	2.39583	2.5604	2.72497	0.0198266	0.0107976	0.109608	0.0920575
chr2	31961571	31961671	1090626	0	-	0.37	(0.35,0.378]	chr2	116908	178	INTRON	INTRON	MEMO1:DPY30	ENSG00000162959.14:ENSG00000162961.14	ENST00000295065.9:ENST00000446765.5:ENST00000404530.6:ENST00000379383.7:ENST00000490459.5:ENST00000426310.6:ENST00000413686.1:ENST00000407893.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	51	2	2.39583	2.5604	2.72497	0.0198266	0.0107976	0.109608	0.0920575
chr15	67176572	67176671	6052970	0	+	0.373737	(0.35,0.378]	chr15	576318	16	INTRON	INTRON	SMAD3	ENSG00000166949.17	ENST00000327367.9:ENST00000679624.1:ENST00000540846.6:ENST00000558894.5:ENST00000439724.7:ENST00000681239.1:ENST00000537194.6:ENST00000558827.1:ENST00000558428.5:ENST00000560402.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	52	2	1.75561	2.5603749999999996	3.36514	0.0739399	0.00173699	0.190914	0.03851
chr5	65564741	65564839	2368638	0	+	0.418367	(0.408,0.44]	chr5	228218	4	INTRON	INTRON	PPWD1	ENSG00000113593.12	ENST00000508982.1:ENST00000535264.5:ENST00000538977.5:ENST00000503435.5:ENST00000515447.5:ENST00000261308.10:ENST00000510930.5:ENST00000511908.5:ENST00000502703.5:ENST00000505380.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	97	2	2.23161	2.56037	2.88913	0.00206564	0.00185044	0.04217	0.0388609
chr2	32458821	32458920	731820	0	+	0.393939	(0.378,0.408]	chr2	84399	45	INTRON	INTRON	BIRC6	ENSG00000115760.15	ENST00000421745.7:ENST00000648282.1	protein_coding	protein_coding	protein_coding	protein_coding	4	66	2	2.21238	2.560365	2.90835	0.0218124	0.00133715	0.11491	0.0335955
chrX	136975025	136975125	7728128	0	+	0.48	(0.476,0.515]	chrX	790798	112	INTRON	INTRON	TM9SF5P	ENSG00000234062.9	ENST00000650669.2:ENST00000687469.1:ENST00000431464.6:ENST00000685550.1:ENST00000685929.1:ENST00000424306.5:ENST00000687978.1:ENST00000688713.1:ENST00000693626.1:ENST00000686432.1:ENST00000693698.1:ENST00000426943.4	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	3	47	2	2.10874	2.560355	3.01197	0.0285608	0.00633162	0.12666	0.0722266
chr17	56913117	56913204	6799140	0	-	0.402299	(0.378,0.408]	chr17	671288	1	SS5_PROX	SS5_PROX:INTRON	TRIM25	ENSG00000121060.19	ENST00000648772.1:ENST00000682766.1:ENST00000316881.9:ENST00000537230.3:ENST00000572021.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	90	2	2.256	2.56032	2.86464	0.00336115	0.00215581	0.0532154	0.0417866
chr10	42809907	42810007	4428306	0	+	0.42	(0.408,0.44]	chr10	408133	73	INTRON	INTRON	BMS1	ENSG00000165733.8	ENST00000374518.6	protein_coding	protein_coding	protein_coding	protein_coding	4	57	2	2.22268	2.560315	2.89795	0.0110735	0.00770925	0.0873897	0.0784002
chr22	20952966	20953064	7480875	0	+	0.571429	(0.57,1]	chr22	763101	33	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	CRKL	ENSG00000099942.13	ENST00000354336.8:ENST00000411769.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	82	2	2.53502	2.5602549999999997	2.58549	6.60462e-4	5.47177e-5	0.023462	0.00606404
chr1	201957755	201957846	292363	0	+	0.340659	(0.32,0.35]	chr1	33665	3	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	TIMM17A	ENSG00000134375.11	ENST00000367287.5:ENST00000478378.5:ENST00000484647.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	126	2	2.52467	2.560245	2.59582	0.00178944	0.00164175	0.0392749	0.0369207
chr12	71662386	71662484	5363580	0	-	0.357143	(0.35,0.378]	chr12	512045	16	INTRON	INTRON	ZFC3H1	ENSG00000133858.17	ENST00000378743.9:ENST00000552994.5:ENST00000550712.1:ENST00000552037.1:ENST00000548100.1:ENST00000549407.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	51	2	2.23043	2.56023	2.89003	0.0187487	0.0122391	0.117523	0.0910127
chr2	61286039	61286136	1128665	0	-	0.360825	(0.35,0.378]	chr2	121318	7	INTRON	INTRON	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000472706.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	38	2	2.47065	2.560225	2.6498	0.0386172	0.0210137	0.142656	0.122348
chr6	20585348	20585448	2828894	0	+	0.37	(0.35,0.378]	chr6	265649	258	INTRON	INTRON	CDKAL1	ENSG00000145996.11	ENST00000274695.8:ENST00000378610.1	protein_coding	protein_coding	protein_coding	protein_coding	2	38	2	2.47065	2.560225	2.6498	0.0386172	0.0210137	0.142656	0.122348
chr17	36523833	36523933	6759537	0	-	0.39	(0.378,0.408]	chr17	664564	75	INTRON	INTRON	MYO19	ENSG00000278259.5	ENST00000614623.5:ENST00000610992.4:ENST00000621550.4:ENST00000610930.4:ENST00000621344.4:ENST00000620640.4:ENST00000616159.4:ENST00000622055.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	50	2	1.97143	2.560175	3.14892	0.0398704	0.00499984	0.161534	0.0617433
chr7	102655677	102655777	3589077	0	-	0.4	(0.378,0.408]	chr7	335089	130	INTRON	INTRON	ENSG00000267645	ENSG00000267645.5	ENST00000476151.5	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	3	50	2	1.97143	2.560175	3.14892	0.0398704	0.00499984	0.161534	0.0617433
chr7	129014279	129014378	3636172	0	-	0.494949	(0.476,0.515]	chr7	338122	88	INTRON	INTRON	TNPO3	ENSG00000064419.14	ENST00000627585.2:ENST00000265388.10:ENST00000471234.5:ENST00000482320.5:ENST00000471166.1	protein_coding	protein_coding	protein_coding	protein_coding	4	56	2	1.96833	2.560175	3.15202	0.0195007	0.00455841	0.119967	0.0595107
chr21	42899422	42899521	7411398	0	+	0.464646	(0.44,0.476]	chr21	755302	20	INTRON	INTRON	NDUFV3	ENSG00000160194.18	ENST00000460259.1:ENST00000340344.4:ENST00000354250.7:ENST00000460740.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	63	2	2.33899	2.5601399999999996	2.78129	0.0142027	0.00229634	0.0959987	0.0439319
chr2	112651554	112651652	852119	0	+	0.44898	(0.44,0.476]	chr2	95574	35	INTRON	INTRON	SLC20A1	ENSG00000144136.11	ENST00000272542.8:ENST00000423633.5:ENST00000498224.5:ENST00000433924.5:ENST00000456264.5:ENST00000413135.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	47	2	2.14573	2.56012	2.97451	0.0238593	0.00853825	0.129075	0.0780043
chr16	595018	595118	6272756	0	+	0.55	(0.515,0.57]	chr16	598723	42	INTRON	INTRON	RAB40C	ENSG00000197562.10	ENST00000535977.5:ENST00000569575.5:ENST00000539661.5:ENST00000566290.5:ENST00000248139.8:ENST00000568586.5:ENST00000538492.5:ENST00000565511.5:ENST00000509637.6:ENST00000563109.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	49	2	1.8661	2.56011	3.25412	0.0274846	0.00224554	0.123904	0.0435144
chr18	2709810	2709909	6865427	0	+	0.323232	(0.32,0.35]	chr18	680035	15	INTRON	INTRON	SMCHD1	ENSG00000101596.17	ENST00000320876.11:ENST00000688342.1:ENST00000693213.1:ENST00000577880.5:ENST00000584897.5:ENST00000581711.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	75	2	1.80487	2.5601	3.31533	0.0210603	0.00323121	0.122559	0.0507087
chr12	57388752	57388852	5338835	0	-	0.33	(0.32,0.35]	chr12	510710	474	INTRON	INTRON	R3HDM2	ENSG00000179912.21	ENST00000402412.6:ENST00000347140.7:ENST00000634871.1:ENST00000448732.1	protein_coding	protein_coding	protein_coding	protein_coding	6	102	2	2.12121	2.560095	2.99898	0.00650424	0.00148392	0.0735144	0.034977
chr7	100035395	100035495	3363295	0	+	0.33	(0.32,0.35]	chr7	314249	13	UTR3	UTR3:EXON_MRNA	ZKSCAN1	ENSG00000106261.17	ENST00000535170.5:ENST00000324306.11:ENST00000620510.1	protein_coding	protein_coding	protein_coding	protein_coding	4	78	2	2.25173	2.5600449999999997	2.86836	0.0180122	0.00250845	0.114436	0.0446195
chr2	23874135	23874235	1080416	0	-	0.43	(0.408,0.44]	chr2	115327	40	INTRON	INTRON	ATAD2B	ENSG00000119778.15	ENST00000238789.10:ENST00000439915.1	protein_coding	protein_coding	protein_coding	protein_coding	4	59	2	2.46587	2.560035	2.6542	0.0227514	0.00280622	0.117618	0.0488779
chr3	136194633	136194712	1824223	0	-	0.417722	(0.408,0.44]	chr3	183522	2	SS5_PROX	SS5_PROX:INTRON	MSL2	ENSG00000174579.4	ENST00000309993.3:ENST00000481989.1:ENST00000491050.1:ENST00000473093.1	protein_coding	protein_coding	protein_coding	protein_coding	4	57	2	1.8749	2.56	3.2451	0.0264246	0.00337792	0.133676	0.0516884
chr12	111580266	111580366	5413042	0	-	0.45	(0.44,0.476]	chr12	516941	155	INTRON	INTRON	ATXN2	ENSG00000204842.18	ENST00000642389.2:ENST00000608853.5:ENST00000672613.1:ENST00000673436.1:ENST00000643669.2:ENST00000616825.4:ENST00000389153.10:ENST00000550104.5:ENST00000483311.6:ENST00000672335.1:ENST00000673557.1:ENST00000673283.1:ENST00000673449.1:ENST00000535949.5:ENST00000542287.6:ENST00000644883.1:ENST00000647305.1:ENST00000671792.1:ENST00000392645.6:ENST00000672105.1:ENST00000549455.1:ENST00000548492.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	13	176	2	1.88802	2.559975	3.23193	0.0037364	1.46355e-5	0.0536178	0.00286673
chr1	35420470	35420569	69849	0	+	0.464646	(0.44,0.476]	chr1	8885	9	UTR3	UTR3:EXON_MRNA	ZMYM4	ENSG00000146463.12	ENST00000314607.11:ENST00000457946.1	protein_coding	protein_coding	protein_coding	protein_coding	5	77	2	2.1762	2.559965	2.94373	0.0092251	0.00143431	0.0855292	0.0340925
chr20	35709902	35709995	7336214	0	-	0.290323	(0.28,0.32]	chr20	747416	2	SS5_PROX	SS5_PROX:INTRON	RBM39	ENSG00000131051.24	ENST00000253363.11:ENST00000639702.1:ENST00000656873.1:ENST00000463004.5:ENST00000361162.10:ENST00000461283.5:ENST00000403542.6:ENST00000338163.10:ENST00000528062.7:ENST00000429968.5:ENST00000444878.5:ENST00000665058.1:ENST00000476806.5:ENST00000495293.5:ENST00000492779.5:ENST00000465158.5:ENST00000448303.5:ENST00000470563.5:ENST00000615771.5:ENST00000471635.5:ENST00000468086.1:ENST00000475651.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	121	2	1.38367	2.559965	3.73626	0.0292345	7.58796e-4	0.141787	0.025219
chr6	44440671	44440770	2873459	0	+	0.373737	(0.35,0.378]	chr6	272707	104	INTRON	INTRON	CDC5L	ENSG00000096401.8	ENST00000371477.4	protein_coding	protein_coding	protein_coding	protein_coding	3	52	2	2.19034	2.55993	2.92952	0.023941	0.00881187	0.119443	0.084878
chr2	15480179	15480278	1072346	0	-	0.464646	(0.44,0.476]	chr2	114416	15	INTRON	INTRON	NBAS	ENSG00000151779.13	ENST00000281513.10:ENST00000427792.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	96	2	2.14532	2.5598	2.97428	0.00311081	0.00125568	0.0512673	0.0323608
chr5	171392180	171392275	2546611	0	+	0.421053	(0.408,0.44]	chr5	243091	5	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NPM1	ENSG00000181163.14	ENST00000517671.5:ENST00000676613.1:ENST00000678186.1:ENST00000678267.1:ENST00000677297.1:ENST00000521672.6:ENST00000679190.1:ENST00000677467.1:ENST00000678280.1:ENST00000676625.1:ENST00000679006.1:ENST00000351986.10:ENST00000676504.1:ENST00000676589.1:ENST00000677357.1:ENST00000679233.1:ENST00000296930.10:ENST00000393820.2:ENST00000521260.2:ENST00000518587.2:ENST00000678774.1:ENST00000521710.2:ENST00000677600.1:ENST00000677741.1:ENST00000677325.1:ENST00000677672.1:ENST00000677907.1:ENST00000677904.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	54	2	2.3975	2.55979	2.72208	0.040266	0.00364449	0.161534	0.0535094
chr12	103774082	103774181	5401120	0	-	0.484848	(0.476,0.515]	chr12	515204	19	UTR3	UTR3:EXON_MRNA:INTRON	NT5DC3	ENSG00000111696.12	ENST00000447799.5:ENST00000392876.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	80	2	1.5371	2.559765	3.58243	0.028567	6.18479e-4	0.126677	0.0223951
chr7	101831968	101832068	3366508	0	+	0.58	(0.57,1]	chr7	315215	126	INTRON	INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000497815.5:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000607092.1:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000558469.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	51	2	2.1026	2.55966	3.01672	0.00326268	5.94133e-4	0.0508595	0.0221865
chr15	40187354	40187454	6001516	0	+	0.5	(0.476,0.515]	chr15	570622	3	SS5_PROX	SS5_PROX:INTRON	BUB1B	ENSG00000156970.13	ENST00000412359.7:ENST00000287598.11:ENST00000559733.5:ENST00000557848.1:ENST00000559772.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	48	2	2.48527	2.559615	2.63396	0.03496	0.00426634	0.13747500000000001	0.0596808
chr21	31664145	31664225	7395747	0	+	0.5	(0.476,0.515]	chr21	753294	3	SS5_PROX	SS5_PROX:INTRON	SOD1	ENSG00000142168.15	ENST00000389995.4:ENST00000270142.11:ENST00000476106.5:ENST00000470944.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	48	2	2.48527	2.559615	2.63396	0.03496	0.00426634	0.13747500000000001	0.0596808
chr4	39906146	39906243	2131474	0	-	0.484536	(0.476,0.515]	chr4	210187	16	INTRON	INTRON	PDS5A	ENSG00000121892.15	ENST00000303538.13:ENST00000503396.5:ENST00000513798.1:ENST00000512643.1:ENST00000503867.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	48	2	2.48527	2.559615	2.63396	0.03496	0.00426634	0.13747500000000001	0.0596808
chr19	46726265	46726363	7195051	0	-	0.561224	(0.515,0.57]	chr19	728888	1	INTRON	INTRON	STRN4	ENSG00000090372.15	ENST00000391910.7:ENST00000263280.11:ENST00000539396.5:ENST00000595357.5:ENST00000594287.6:ENST00000601631.6:ENST00000594357.6:ENST00000600358.7:ENST00000435164.6:ENST00000602223.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	54	2	2.43783	2.5595749999999997	2.68132	0.00916404	0.00324198	0.0812949	0.0524329
chr1	27460308	27460408	406466	0	-	0.39	(0.378,0.408]	chr1	48986	310	INTRON	INTRON	WASF2	ENSG00000158195.11	ENST00000618852.5:ENST00000536657.1	protein_coding	protein_coding	protein_coding	protein_coding	5	79	2	2.17296	2.559545	2.94613	0.0110512	0.00112461	0.0873897	0.0308177
chr1	116532735	116532835	528959	0	-	0.33	(0.32,0.35]	chr1	62423	104	INTRON	INTRON	CD58	ENSG00000116815.16	ENST00000369489.10:ENST00000464088.5:ENST00000457047.6:ENST00000526981.1:ENST00000369487.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	74	2	2.22429	2.55952	2.89475	0.0226421	0.00160352	0.117557	0.0367961
chr3	123927604	123927704	1803822	0	-	0.34	(0.32,0.35]	chr3	181224	115	INTRON	INTRON	CCDC14	ENSG00000175455.16	ENST00000463996.1:ENST00000479903.5:ENST00000409697.8:ENST00000488653.6:ENST00000485727.5:ENST00000495381.5:ENST00000409657.5:ENST00000489746.5:ENST00000433542.7:ENST00000310351.8:ENST00000483247.1:ENST00000419247.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	41	2	2.48693	2.559515	2.6321	0.0338094	0.0268	0.146709	0.123349
chr8	140839985	140840084	4078449	0	-	0.323232	(0.32,0.35]	chr8	370509	91	INTRON	INTRON	PTK2	ENSG00000169398.20	ENST00000696786.1:ENST00000522684.5:ENST00000395218.3:ENST00000519654.5:ENST00000521059.5:ENST00000517887.5:ENST00000519993.5:ENST00000340930.7:ENST00000519419.5:ENST00000524202.5:ENST00000524357.5:ENST00000521791.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	41	2	2.48693	2.559515	2.6321	0.0338094	0.0268	0.146709	0.123349
chr17	59620573	59620673	6641569	0	+	0.59	(0.57,1]	chr17	648526	4	SS5_PROX	SS5_PROX:INTRON	CLTC	ENSG00000141367.12	ENST00000621829.4:ENST00000393043.5:ENST00000269122.8:ENST00000580081.1:ENST00000579456.5:ENST00000584313.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	40	2	2.16779	2.55951	2.95123	0.00900694	8.39007e-4	0.0803518	0.0263691
chr15	41287474	41287570	6004421	0	+	0.354167	(0.35,0.378]	chr15	571257	1	SS3_PROX	SS3_PROX:INTRON	OIP5-AS1	ENSG00000247556.6	ENST00000558945.5:ENST00000500949.6:ENST00000561275.5:ENST00000560706.5:ENST00000559368.5:ENST00000557993.5:ENST00000501665.2	lncRNA	lncRNA	lncRNA	lncRNA	4	62	2	2.28182	2.559455	2.83709	0.01435	0.00637232	0.0966737	0.0724821
chr7	148808970	148809070	3669984	0	-	0.38	(0.378,0.408]	chr7	340541	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	EZH2	ENSG00000106462.12	ENST00000683292.1:ENST00000320356.7:ENST00000492143.5:ENST00000478654.5:ENST00000350995.6:ENST00000460911.5:ENST00000684400.1:ENST00000683744.1:ENST00000684510.1:ENST00000682317.1:ENST00000683293.1:ENST00000682263.1:ENST00000684300.1:ENST00000476773.5:ENST00000483967.5:ENST00000684436.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	50	2	2.26009	2.559315	2.85854	0.0188651	0.0107837	0.108861	0.0920575
chr3	47586248	47586346	1683083	0	-	0.428571	(0.408,0.44]	chr3	171953	11	UTR3	UTR3:EXON_MRNA	SMARCC1	ENSG00000173473.11	ENST00000254480.10	protein_coding	protein_coding	protein_coding	protein_coding	4	59	2	1.6306	2.559265	3.48793	0.0544158	0.00130904	0.182272	0.0331539
chr10	30310874	30310971	4587253	0	-	0.257732	[0,0.28]	chr10	422944	12	UTR3	UTR3:EXON_MRNA	MTPAP	ENSG00000107951.15	ENST00000263063.9	protein_coding	protein_coding	protein_coding	protein_coding	3	68	2	2.02265	2.55926	3.09587	0.0449017	0.00651565	0.149888	0.0735232
chr7	129437556	129437654	3411583	0	+	0.22449	[0,0.28]	chr7	318888	26	INTRON	INTRON	STRIP2	ENSG00000128578.10	ENST00000249344.7:ENST00000435494.2	protein_coding	protein_coding	protein_coding	protein_coding	3	68	2	2.02265	2.55926	3.09587	0.0449017	0.00651565	0.149888	0.0735232
chr4	55397879	55397973	1960607	0	+	0.425532	(0.408,0.44]	chr4	196542	6	INTRON	INTRON	TMEM165	ENSG00000134851.13	ENST00000381334.10:ENST00000506198.5:ENST00000508404.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	39	555	2	2.403	2.55922	2.71544	9.1033e-5	1.27672e-6	0.00849118	6.61338e-4
chrX	134427604	134427703	7724055	0	+	0.434343	(0.408,0.44]	chrX	790147	24	UTR3	UTR3:EXON_MRNA	PHF6	ENSG00000156531.18	ENST00000687496.1:ENST00000685553.1:ENST00000625464.2:ENST00000370803.8:ENST00000332070.7:ENST00000691812.1:ENST00000688598.1:ENST00000693759.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	134	2	2.08282	2.559095	3.03537	0.0051355	5.12176e-5	0.062965	0.00585477
chr17	59154061	59154160	6802390	0	-	0.464646	(0.44,0.476]	chr17	671864	24	INTRON	INTRON	SKA2	ENSG00000182628.13	ENST00000330137.12:ENST00000580541.1:ENST00000578105.1:ENST00000578519.5:ENST00000583927.1:ENST00000581068.5:ENST00000437036.6:ENST00000583380.5:ENST00000583976.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	49	2	1.85146	2.559075	3.26669	0.0545846	0.00305435	0.182529	0.0493883
chr19	38838151	38838223	7180711	0	-	0.472222	(0.44,0.476]	chr19	725852	1	SS5_PROX	SS5_PROX:INTRON	HNRNPL	ENSG00000104824.18	ENST00000221419.10:ENST00000647557.1:ENST00000595443.5:ENST00000388749.7:ENST00000601449.5:ENST00000597731.1:ENST00000595164.5:ENST00000600873.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	49	2	1.85146	2.559075	3.26669	0.0545846	0.00305435	0.182529	0.0493883
chr7	155305378	155305477	3451841	0	+	0.616162	(0.57,1]	chr7	322633	11	INTRON	INTRON	INSIG1	ENSG00000186480.13	ENST00000344756.8:ENST00000340368.9:ENST00000342407.5:ENST00000476756.1	protein_coding	protein_coding	protein_coding	protein_coding	8	60	2	2.26008	2.55905	2.85802	0.0014773	3.01883e-4	0.0353237	0.0160895
chr22	15787648	15787744	7472919	0	+	0.3125	(0.28,0.32]	chr22	761926	6	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	DUXAP8	ENSG00000206195.11	ENST00000413768.5:ENST00000437781.5:ENST00000383038.7:ENST00000661115.1:ENST00000603308.2:ENST00000447898.5:ENST00000661156.1	lncRNA	lncRNA	lncRNA	lncRNA	7	100	2	1.38178	2.5590200000000003	3.73626	0.047484	7.58796e-4	0.169527	0.025219
chr17	37618091	37618191	6764138	0	-	0.29	(0.28,0.32]	chr17	665162	4	SS5_PROX	SS5_PROX:INTRON	DDX52	ENSG00000278053.5	ENST00000617633.5:ENST00000616646.4:ENST00000620209.4:ENST00000614307.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	59	2	2.33771	2.558875	2.78004	0.0193244	0.0142701	0.108861	0.103838
chr6	104778786	104778882	3171666	0	-	0.3125	(0.28,0.32]	chr6	295843	11	INTRON	INTRON	HACE1	ENSG00000085382.12	ENST00000262903.9:ENST00000369127.8:ENST00000416605.6:ENST00000517995.5:ENST00000369125.6:ENST00000518503.5:ENST00000517424.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	59	2	2.33771	2.558875	2.78004	0.0193244	0.0142701	0.108861	0.103838
chr7	40031565	40031665	3311443	0	+	0.3	(0.28,0.32]	chr7	307507	292	INTRON	INTRON	CDK13	ENSG00000065883.17	ENST00000340829.10:ENST00000181839.10:ENST00000613626.4:ENST00000646039.1:ENST00000643859.1:ENST00000484589.2:ENST00000643915.1:ENST00000647453.1:ENST00000645470.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	59	2	2.33771	2.558875	2.78004	0.0193244	0.0142701	0.108861	0.103838
chr7	123717821	123717921	3632349	0	-	0.38	(0.378,0.408]	chr7	337581	82	INTRON	INTRON	WASL	ENSG00000106299.8	ENST00000223023.5	protein_coding	protein_coding	protein_coding	protein_coding	3	49	2	1.94681	2.55885	3.17089	0.0457723	0.00357279	0.149888	0.0548435
chr7	20213212	20213312	3497510	0	-	0.39	(0.378,0.408]	chr7	326599	142	INTRON	INTRON	MACC1	ENSG00000183742.13	ENST00000400331.10:ENST00000332878.8:ENST00000471019.1:ENST00000483317.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	49	2	2.51464	2.5587999999999997	2.60296	0.0267851	0.00684341	0.123349	0.0748032
chr10	77915737	77915837	4654684	0	-	0.39	(0.378,0.408]	chr10	428776	33	INTRON	INTRON	DLG5	ENSG00000151208.17	ENST00000372391.7	protein_coding	protein_coding	protein_coding	protein_coding	3	49	2	2.00398	2.55879	3.1136	0.0393906	0.00443339	0.143072	0.061054
chr10	68426166	68426265	4639297	0	-	0.353535	(0.35,0.378]	chr10	426660	29	INTRON	INTRON	DNA2	ENSG00000138346.15	ENST00000358410.8:ENST00000551118.6:ENST00000399179.6:ENST00000399180.3:ENST00000440722.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	62	2	1.70607	2.5587299999999997	3.41139	0.0482819	0.00143263	0.153283	0.0347139
chr12	132854015	132854104	5450496	0	-	0.382022	(0.378,0.408]	chr12	522178	6	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CHFR	ENSG00000072609.18	ENST00000450056.7:ENST00000266880.11:ENST00000443047.6:ENST00000544268.5:ENST00000315585.11:ENST00000432561.6:ENST00000535527.5:ENST00000511001.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	59	2	2.2708	2.5587150000000003	2.84663	0.0133954	0.00646593	0.0946278	0.073179
chr19	10996844	10996944	7015934	0	+	0.49	(0.476,0.515]	chr19	697241	3	SS5_PROX	SS5_PROX:INTRON	SMARCA4	ENSG00000127616.20	ENST00000644737.1:ENST00000642726.1:ENST00000646484.1:ENST00000643549.1:ENST00000643296.1:ENST00000647230.1:ENST00000642628.1:ENST00000646510.1:ENST00000429416.8:ENST00000344626.10:ENST00000646693.2:ENST00000645460.1:ENST00000541122.6:ENST00000589677.5:ENST00000444061.8:ENST00000590574.6:ENST00000591545.6:ENST00000643995.1:ENST00000644327.1:ENST00000644065.1:ENST00000644963.1:ENST00000643208.1:ENST00000645061.1:ENST00000642350.1:ENST00000644290.1:ENST00000647268.1:ENST00000643857.1:ENST00000644267.1:ENST00000646183.1:ENST00000646746.1:ENST00000643534.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	64	2	1.87147	2.5587150000000003	3.24596	0.0157856	0.00322919	0.109464	0.0507087
chr7	75474003	75474103	3558807	0	-	0.3	(0.28,0.32]	chr7	331545	314	INTRON	INTRON	POM121C	ENSG00000272391.6	ENST00000615331.5:ENST00000398379.2	protein_coding	protein_coding	protein_coding	protein_coding	7	123	2	2.22031	2.558695	2.89708	0.0027867	0.00257346	0.0488769	0.0451443
chr20	50670149	50670249	7355229	0	-	0.46	(0.44,0.476]	chr20	750067	334	INTRON	INTRON	RIPOR3	ENSG00000042062.13	ENST00000327979.8	protein_coding	protein_coding	protein_coding	protein_coding	2	35	2	2.29842	2.5586900000000004	2.81896	0.0552483	0.0120766	0.165463	0.0962311
chr5	131323028	131323127	2485227	0	+	0.464646	(0.44,0.476]	chr5	237120	65	INTRON	INTRON	CDC42SE2	ENSG00000158985.14	ENST00000502840.5:ENST00000511432.5:ENST00000506419.5:ENST00000395246.5:ENST00000505065.2:ENST00000504701.5:ENST00000503291.5:ENST00000360515.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	35	2	2.29842	2.5586900000000004	2.81896	0.0552483	0.0120766	0.165463	0.0962311
chr3	186931594	186931694	1586183	0	+	0.55	(0.515,0.57]	chr3	164313	2	SS5_PROX	SS5_PROX:INTRON	ST6GAL1	ENSG00000073849.16	ENST00000676786.1:ENST00000463542.1:ENST00000169298.8:ENST00000457772.6:ENST00000455441.5:ENST00000427315.5:ENST00000677292.1:ENST00000468614.1:ENST00000458216.5:ENST00000430309.5:ENST00000417392.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	54	2	2.38476	2.5586700000000002	2.73258	0.0110593	0.00260192	0.0873897	0.0470772
chr3	15848583	15848683	1624333	0	-	0.47	(0.44,0.476]	chr3	168034	339	INTRON	INTRON	ANKRD28	ENSG00000206560.12	ENST00000399451.6:ENST00000412318.5:ENST00000439830.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	104	2	2.44562	2.558655	2.67169	0.00140924	0.00135452	0.0340865	0.0339121
chr8	102345980	102346065	4012082	0	-	0.541176	(0.515,0.57]	chr8	367210	2	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	UBR5	ENSG00000104517.13	ENST00000520539.6:ENST00000220959.8:ENST00000521922.5:ENST00000518145.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	42	2	2.43589	2.558605	2.68132	0.0370871	0.00324198	0.139194	0.0524329
chr3	23853079	23853179	1388201	0	+	0.53	(0.515,0.57]	chr3	145385	412	INTRON	INTRON	UBE2E1	ENSG00000170142.12	ENST00000306627.8:ENST00000346855.7:ENST00000495141.5:ENST00000442670.5:ENST00000424381.5:ENST00000467766.5:ENST00000475680.5:ENST00000452012.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	54	2	2.48902	2.558595	2.62817	0.00760558	0.004048	0.0749571	0.0578376
chr11	66653370	66653470	4811184	0	+	0.5	(0.476,0.515]	chr11	447918	11	INTRON	INTRON	RBM4	ENSG00000173933.21	ENST00000396053.9	protein_coding	protein_coding	protein_coding	protein_coding	5	77	2	2.11679	2.55857	3.00035	0.0115627	0.00109036	0.0962115	0.0303873
chr1	28580172	28580266	409406	0	-	0.585106	(0.57,1]	chr1	49297	4	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SNHG12	ENSG00000197989.15	ENST00000648127.1:ENST00000470977.6:ENST00000531126.7:ENST00000461832.2:ENST00000481368.6:ENST00000692541.1:ENST00000693199.1:ENST00000461448.6:ENST00000481220.6:ENST00000464612.5:ENST00000474814.1:ENST00000475441.6:ENST00000488745.5:ENST00000483436.5:ENST00000650259.1:ENST00000650239.1:ENST00000648251.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	5	45	2	2.17026	2.558465	2.94667	0.0220522	1.7758e-4	0.123836	0.0121697
chr10	89742623	89742721	4484989	0	+	0.316327	(0.28,0.32]	chr10	412803	32	INTRON	INTRON	KIF20B	ENSG00000138182.15	ENST00000371728.8:ENST00000260753.8:ENST00000478929.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	111	2	1.92031	2.558435	3.19656	0.0182101	4.54565e-4	0.107833	0.0192381
chr22	45171351	45171425	7529939	0	+	0.445946	(0.44,0.476]	chr22	769879	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NUP50	ENSG00000093000.19	ENST00000347635.9:ENST00000407019.6:ENST00000424634.5:ENST00000497960.5:ENST00000417702.5:ENST00000430547.5:ENST00000434760.5:ENST00000484186.5:ENST00000493456.5:ENST00000396096.6:ENST00000419387.5:ENST00000422489.1:ENST00000486184.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	35	2	2.5364	2.5583650000000002	2.58033	0.0309324	0.0247511	0.131869	0.13151
chr5	180575091	180575190	2562684	0	+	0.454545	(0.44,0.476]	chr5	245145	10	UTR3	UTR3:EXON_MRNA	CNOT6	ENSG00000113300.13	ENST00000261951.9:ENST00000393356.7:ENST00000618123.4	protein_coding	protein_coding	protein_coding	protein_coding	2	35	2	2.5364	2.5583650000000002	2.58033	0.0309324	0.0247511	0.131869	0.13151
chr9	87727114	87727211	4151982	0	+	0.453608	(0.44,0.476]	chr9	378687	17	UTR5	UTR5:EXON_MRNA:SS3_PROX:INTRON	CTSL	ENSG00000135047.16	ENST00000678442.1:ENST00000679149.1:ENST00000679157.1:ENST00000676946.1:ENST00000676531.1:ENST00000677935.1:ENST00000677345.1:ENST00000677821.1:ENST00000678752.1:ENST00000677019.1:ENST00000343150.10:ENST00000678367.1:ENST00000677864.1:ENST00000482054.2:ENST00000342020.6:ENST00000677262.1:ENST00000678649.1:ENST00000679141.1:ENST00000676881.1:ENST00000340342.11:ENST00000495822.2:ENST00000677955.1:ENST00000676769.1:ENST00000679030.1:ENST00000678596.1:ENST00000676961.1:ENST00000676576.1:ENST00000678599.1:ENST00000677638.1:ENST00000677615.1:ENST00000679252.1:ENST00000676466.1:ENST00000677349.1:ENST00000677761.1:ENST00000678654.1:ENST00000676480.1:ENST00000678965.1:ENST00000676909.1:ENST00000679028.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	35	2	2.5364	2.5583650000000002	2.58033	0.0309324	0.0247511	0.131869	0.13151
chr18	32107061	32107161	6887411	0	+	0.35	(0.32,0.35]	chr18	682655	138	INTRON	INTRON	RNF138	ENSG00000134758.14	ENST00000261593.8:ENST00000585103.5:ENST00000578914.1:ENST00000580519.1:ENST00000578107.5:ENST00000583733.1:ENST00000257190.9:ENST00000580499.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	55	2	2.54408	2.558355	2.57263	0.0312297	0.00659077	0.13151	0.0737338
chr7	101920803	101920902	3367400	0	+	0.343434	(0.32,0.35]	chr7	315225	42	INTRON	INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000497815.5:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000558469.5:ENST00000560541.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	55	2	2.54408	2.558355	2.57263	0.0312297	0.00659077	0.13151	0.0737338
chr9	78022816	78022916	4271858	0	-	0.4	(0.378,0.408]	chr9	392880	1001	INTRON	INTRON	GNAQ	ENSG00000156052.11	ENST00000286548.9:ENST00000411677.1	protein_coding	protein_coding	protein_coding	protein_coding	3	49	2	2.11103	2.5583549999999997	3.00568	0.0266911	0.00811866	0.134419	0.0766625
chr1	147945690	147945790	212965	0	+	0.4	(0.378,0.408]	chr1	23655	12	INTRON	INTRON	GPR89B	ENSG00000188092.15	ENST00000478307.5:ENST00000488165.5:ENST00000314163.12:ENST00000468618.6:ENST00000491975.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	59	2	1.8374	2.55831	3.27922	0.0299228	0.00312717	0.142135	0.0499153
chr16	47652618	47652718	6345241	0	+	0.43	(0.408,0.44]	chr16	608988	13	INTRON	INTRON	PHKB	ENSG00000102893.17	ENST00000566044.5:ENST00000299167.12:ENST00000696809.1:ENST00000323584.10:ENST00000568171.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	36	2	2.3975	2.558305	2.71911	0.040266	0.0189489	0.161534	0.108861
chr1	114506353	114506453	527851	0	-	0.33	(0.32,0.35]	chr1	62153	416	INTRON	INTRON	TRIM33	ENSG00000197323.12	ENST00000358465.7:ENST00000369543.6	protein_coding	protein_coding	protein_coding	protein_coding	2	43	2	2.21917	2.5583	2.89743	0.0641245	0.0127608	0.199279	0.0926667
chr16	89776791	89776886	6544395	0	-	0.347368	(0.32,0.35]	chr16	634509	6	INTRON	INTRON	FANCA	ENSG00000187741.16	ENST00000561667.2:ENST00000389301.8:ENST00000568369.6:ENST00000564475.6:ENST00000696275.1:ENST00000696287.1:ENST00000696286.1:ENST00000696274.1:ENST00000567510.2:ENST00000696291.1:ENST00000696276.1:ENST00000567205.2:ENST00000567284.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	43	2	2.21917	2.5583	2.89743	0.0641245	0.0127608	0.199279	0.0926667
chr11	9433369	9433469	4729922	0	+	0.23	[0,0.28]	chr11	437917	4	SS3_PROX	SS3_PROX:INTRON	IPO7	ENSG00000205339.10	ENST00000379719.8	protein_coding	protein_coding	protein_coding	protein_coding	2	50	2	2.54624	2.5582849999999997	2.57033	0.0388449	0.0305273	0.143385	0.143072
chr18	2581206	2581305	6864489	0	+	0.232323	[0,0.28]	chr18	679858	18	INTRON	INTRON	NDC80	ENSG00000080986.13	ENST00000261597.9:ENST00000576274.2	protein_coding	protein_coding	protein_coding	protein_coding	2	50	2	2.54624	2.5582849999999997	2.57033	0.0388449	0.0305273	0.143385	0.143072
chr1	70215935	70216034	142532	0	+	0.555556	(0.515,0.57]	chr1	15965	98	INTRON	INTRON	SRSF11	ENSG00000116754.14	ENST00000370951.5:ENST00000463877.1:ENST00000687381.1:ENST00000370950.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	31	2	2.12971	2.55824	2.98677	0.0757903	0.00632549	0.194427	0.0722266
chr11	118451391	118451491	4872270	0	+	0.55	(0.515,0.57]	chr11	454987	15	INTRON	INTRON	ENSG00000285827:KMT2A	ENSG00000285827.1:ENSG00000118058.24	ENST00000648261.1:ENST00000389506.10:ENST00000534358.8:ENST00000533790.3:ENST00000527869.7:ENST00000649690.2:ENST00000691053.1:ENST00000531904.6:ENST00000649699.1:ENST00000648029.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	31	2	2.12971	2.55824	2.98677	0.0757903	0.00632549	0.194427	0.0722266
chr2	235612817	235612917	1042525	0	+	0.52	(0.515,0.57]	chr2	111222	879	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1:ENST00000402604.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	31	2	2.12971	2.55824	2.98677	0.0757903	0.00632549	0.194427	0.0722266
chr7	107090277	107090377	3377623	0	+	0.52	(0.515,0.57]	chr7	316248	196	INTRON	INTRON	PRKAR2B	ENSG00000005249.13	ENST00000265717.5:ENST00000393613.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	31	2	2.12971	2.55824	2.98677	0.0757903	0.00632549	0.194427	0.0722266
chr7	123730619	123730719	3632477	0	-	0.33	(0.32,0.35]	chr7	337581	210	INTRON	INTRON	WASL	ENSG00000106299.8	ENST00000223023.5	protein_coding	protein_coding	protein_coding	protein_coding	3	56	2	2.4458	2.55824	2.67068	0.0425977	0.00406276	0.148082	0.0578984
chr15	58003688	58003787	6186913	0	-	0.343434	(0.32,0.35]	chr15	589758	82	INTRON	INTRON	ALDH1A2	ENSG00000128918.15	ENST00000537372.5:ENST00000249750.9:ENST00000347587.7:ENST00000430119.6:ENST00000558231.5:ENST00000559517.5:ENST00000559266.5:ENST00000561070.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	75	2	1.95408	2.558225	3.16237	0.0124054	0.00550276	0.0973643	0.0648867
chr7	101219201	101219299	3366218	0	+	0.489796	(0.476,0.515]	chr7	315173	10	EXON_LNCRNA	EXON_LNCRNA:INTRON	ZNHIT1	ENSG00000106400.12	ENST00000305105.3:ENST00000461205.5:ENST00000492315.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	47	2	2.06491	2.5582149999999997	3.05152	0.0304733	0.0064848	0.143385	0.0699952
chr14	101889185	101889283	5819792	0	+	0.377551	(0.35,0.378]	chr14	551895	53	INTRON	INTRON	PPP2R5C	ENSG00000078304.20	ENST00000694906.1:ENST00000422945.6:ENST00000328724.9:ENST00000350249.7:ENST00000557621.5:ENST00000334743.9:ENST00000445439.7:ENST00000557095.5:ENST00000554137.5:ENST00000556218.5:ENST00000557534.1:ENST00000557716.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	10	158	2	2.48676	2.5581899999999997	2.62962	8.95959e-4	3.61706e-4	0.027646	0.0169808
chr17	46113974	46114074	6784074	0	-	0.42	(0.408,0.44]	chr17	669208	189	INTRON	INTRON	KANSL1	ENSG00000120071.15	ENST00000574590.6:ENST00000572904.6:ENST00000432791.7:ENST00000575318.6:ENST00000638275.1:ENST00000262419.10:ENST00000648792.1:ENST00000639531.1:ENST00000639150.1:ENST00000639853.1:ENST00000571698.2:ENST00000639375.1:ENST00000577114.2:ENST00000638269.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	72	2	1.62843	2.55818	3.48793	0.025242	0.00130904	0.133676	0.0331539
chr19	55403460	55403560	7214039	0	-	0.33	(0.32,0.35]	chr19	732854	13	INTRON	INTRON	UBE2S	ENSG00000108106.14	ENST00000264552.14:ENST00000587845.5:ENST00000589978.1	protein_coding	protein_coding	protein_coding	protein_coding	5	76	2	1.46414	2.558005	3.65187	0.065059	5.49434e-4	0.179599	0.0213049
chr16	123545	123645	6425615	0	-	0.31	(0.28,0.32]	chr16	617373	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	NPRL3	ENSG00000103148.17	ENST00000611875.5:ENST00000622194.4:ENST00000621703.4:ENST00000399953.7:ENST00000457916.5:ENST00000483663.5:ENST00000422814.5:ENST00000468260.5:ENST00000456528.5:ENST00000419636.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	72	2	1.68409	2.557975	3.43186	0.0548665	0.00160646	0.165463	0.0367961
chr5	91374821	91374921	2674901	0	-	0.43	(0.408,0.44]	chr5	253096	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ARRDC3	ENSG00000113369.9	ENST00000265138.4:ENST00000505631.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	12	136	2	1.81751	2.557945	3.29838	0.0032692	2.85924e-4	0.0526146	0.0155266
chr12	56644680	56644780	5335803	0	-	0.35	(0.32,0.35]	chr12	510140	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ATP5F1B	ENSG00000110955.9	ENST00000262030.8:ENST00000548474.2:ENST00000547808.5:ENST00000551020.5:ENST00000552959.5:ENST00000553007.2:ENST00000548647.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	55	2	2.07985	2.5579099999999997	3.03597	0.0303092	0.00832487	0.143025	0.0774402
chr5	87304458	87304558	2411154	0	+	0.44	(0.408,0.44]	chr5	232377	348	INTRON	INTRON	RASA1	ENSG00000145715.15	ENST00000274376.11:ENST00000515800.6:ENST00000456692.6:ENST00000506290.1:ENST00000512763.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	50	2	2.45003	2.5579099999999997	2.66579	0.019342	0.00990006	0.119831	0.0838372
chrX	24791332	24791432	7632691	0	+	0.42	(0.408,0.44]	chrX	781731	156	INTRON	INTRON	POLA1	ENSG00000101868.13	ENST00000672178.1:ENST00000379068.8:ENST00000379059.7:ENST00000611764.2:ENST00000480125.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	89	2	2.20979	2.5578950000000003	2.906	0.00496289	0.00131817	0.0615009	0.0333932
chr7	142955326	142955426	3664111	0	-	0.24	[0,0.28]	chr7	340207	4	INTRON	INTRON	KEL	ENSG00000197993.9	ENST00000355265.7:ENST00000479768.6:ENST00000494148.1:ENST00000476829.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	93	2	1.90035	2.55789	3.21543	0.0173564	0.00629013	0.112318	0.0687434
chr16	1850545	1850644	6430132	0	-	0.272727	[0,0.28]	chr16	618357	52	INTRON	INTRON	MEIOB	ENSG00000162039.17	ENST00000325962.9:ENST00000470044.5:ENST00000397344.7:ENST00000496541.6	protein_coding	protein_coding	protein_coding	protein_coding	5	93	2	1.80873	2.55784	3.30695	0.0234525	0.00469836	0.128429	0.0600108
chr4	106320861	106320959	2013360	0	+	0.581633	(0.57,1]	chr4	200504	45	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	AIMP1	ENSG00000164022.18	ENST00000510207.5:ENST00000358008.7:ENST00000684504.1:ENST00000442366.6:ENST00000672341.1:ENST00000394701.6:ENST00000672337.1:ENST00000672003.1:ENST00000671868.1:ENST00000673123.1:ENST00000672911.1:ENST00000672328.1:ENST00000672285.1:ENST00000671960.1:ENST00000673381.2:ENST00000673018.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	66	2	2.40166	2.557785	2.71391	6.82348e-4	3.48732e-4	0.0239168	0.0166455
chr19	18508023	18508123	7152874	0	-	0.55	(0.515,0.57]	chr19	722886	322	INTRON	INTRON	ELL	ENSG00000105656.13	ENST00000262809.9:ENST00000594635.6:ENST00000596915.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	42	2	1.86007	2.5577699999999997	3.25547	0.0526611	0.00261721	0.178401	0.0455413
chr15	27090500	27090600	5983348	0	+	0.41	(0.408,0.44]	chr15	569164	633	INTRON	INTRON	GABRG3	ENSG00000182256.13	ENST00000615808.5:ENST00000555083.5	protein_coding	protein_coding	protein_coding	protein_coding	3	47	2	2.27464	2.5577050000000003	2.84077	0.0158016	0.0132196	0.109464	0.0940535
chr20	32405104	32405203	7256294	0	+	0.414141	(0.408,0.44]	chr20	737076	327	INTRON	INTRON	ASXL1	ENSG00000171456.21	ENST00000651418.1:ENST00000375687.10:ENST00000613218.4:ENST00000644587.1:ENST00000620121.4:ENST00000646985.1:ENST00000643168.1:ENST00000306058.9:ENST00000645688.1:ENST00000470145.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	47	2	2.27464	2.5577050000000003	2.84077	0.0158016	0.0132196	0.109464	0.0940535
chr1	197126390	197126490	613498	0	-	0.43	(0.408,0.44]	chr1	72638	8	INTRON	INTRON	ASPM	ENSG00000066279.19	ENST00000367408.6:ENST00000367409.9:ENST00000680265.1:ENST00000294732.11:ENST00000680710.1:ENST00000681879.1:ENST00000680112.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	76	2	2.46587	2.5576549999999996	2.64944	0.00481947	0.00280622	0.060277	0.0488779
chr5	142112832	142112932	2505562	0	+	0.36	(0.35,0.378]	chr5	239819	34	INTRON	INTRON	NDFIP1	ENSG00000131507.11	ENST00000253814.6:ENST00000509436.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	70	2	1.90041	2.557485	3.21456	0.0145936	0.00420814	0.105992	0.0572185
chr10	30339125	30339225	4587541	0	-	0.37	(0.35,0.378]	chr10	422975	17	INTRON	INTRON	MTPAP	ENSG00000107951.15	ENST00000263063.9:ENST00000488290.5:ENST00000417581.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	73	2	2.23043	2.55744	2.88445	0.0187487	0.00212567	0.117523	0.041756
chr1	40207604	40207704	80431	0	+	0.5	(0.476,0.515]	chr1	10431	46	INTRON	INTRON	RLF	ENSG00000117000.9	ENST00000372771.5	protein_coding	protein_coding	protein_coding	protein_coding	6	91	2	2.5238	2.5574399999999997	2.59108	0.00218334	0.00196853	0.0435144	0.0402283
chr15	52053934	52054034	6029372	0	+	0.37	(0.35,0.378]	chr15	574447	34	INTRON	INTRON	MAPK6	ENSG00000069956.14	ENST00000691380.1:ENST00000681888.1:ENST00000261845.7:ENST00000680066.1:ENST00000680777.1:ENST00000680652.1	protein_coding	protein_coding	protein_coding	protein_coding	5	70	2	1.81955	2.5574250000000003	3.2953	0.0194679	0.0031465	0.11986	0.0500431
chr9	15434335	15434434	4104496	0	+	0.282828	(0.28,0.32]	chr9	373836	3	INTRON	INTRON	SNAPC3	ENSG00000164975.16	ENST00000467062.5:ENST00000610884.4:ENST00000490969.5:ENST00000380821.8:ENST00000421710.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	73	2	1.71442	2.5574149999999998	3.40041	0.0454351	0.00273088	0.164236	0.0467642
chr12	91615920	91616020	5385376	0	-	0.55	(0.515,0.57]	chr12	513485	1087	INTRON	INTRON	ENSG00000289605	ENSG00000289605.1	ENST00000685093.1	lncRNA	lncRNA	lncRNA	lncRNA	2	31	2	2.35125	2.5573949999999996	2.76354	0.0436431	0.0147344	0.162255	0.0983813
chr16	81540382	81540482	6405955	0	+	0.52	(0.515,0.57]	chr16	615031	445	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6	protein_coding	protein_coding	protein_coding	protein_coding	2	31	2	2.35125	2.5573949999999996	2.76354	0.0436431	0.0147344	0.162255	0.0983813
chr4	79985263	79985363	2169665	0	-	0.57	(0.515,0.57]	chr4	213872	4	SS3_PROX	SS3_PROX:INTRON	ANTXR2	ENSG00000163297.18	ENST00000403729.7:ENST00000449651.5:ENST00000679571.1:ENST00000681710.1:ENST00000680913.1:ENST00000681115.1:ENST00000404191.5:ENST00000346652.10:ENST00000307333.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	31	2	2.35125	2.5573949999999996	2.76354	0.0436431	0.0147344	0.162255	0.0983813
chr7	129620401	129620501	3412208	0	+	0.52	(0.515,0.57]	chr7	319009	82	INTRON	INTRON	NRF1	ENSG00000106459.15	ENST00000393232.6:ENST00000477428.5:ENST00000454688.5:ENST00000223190.8:ENST00000311967.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	31	2	2.35125	2.5573949999999996	2.76354	0.0436431	0.0147344	0.162255	0.0983813
chr2	235712011	235712110	1043520	0	+	0.474747	(0.44,0.476]	chr2	111235	24	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1:ENST00000402604.6:ENST00000409538.5:ENST00000614409.4:ENST00000619456.4:ENST00000428334.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	63	2	2.29126	2.557385	2.82351	0.0165638	0.00191049	0.102621	0.0403772
chr8	129502856	129502956	4060310	0	-	0.42	(0.408,0.44]	chr8	369642	77	INTRON	INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1:ENST00000676273.1:ENST00000667643.1:ENST00000668791.1:ENST00000663716.1:ENST00000663572.1:ENST00000676148.1:ENST00000667962.1:ENST00000674877.1:ENST00000675316.1:ENST00000674656.1:ENST00000446592.7:ENST00000667341.1:ENST00000675186.1:ENST00000652971.1:ENST00000661447.1:ENST00000674863.1:ENST00000675498.1:ENST00000675527.1:ENST00000676108.1:ENST00000657647.1:ENST00000675589.1:ENST00000675913.1:ENST00000675109.1:ENST00000671632.1:ENST00000671311.1:ENST00000676099.1:ENST00000660652.1:ENST00000675522.1:ENST00000675183.1:ENST00000658861.1:ENST00000663991.1:ENST00000675044.1:ENST00000675435.1:ENST00000674639.1:ENST00000676069.1:ENST00000675532.1:ENST00000674762.1:ENST00000523151.6:ENST00000675948.1:ENST00000665364.1:ENST00000657251.1:ENST00000675166.1:ENST00000674883.1:ENST00000675867.1:ENST00000674580.1:ENST00000675393.1:ENST00000520048.1:ENST00000674906.1:ENST00000676030.1:ENST00000670588.1:ENST00000675072.1:ENST00000664936.1:ENST00000652914.1:ENST00000657069.1	lncRNA	lncRNA	lncRNA	lncRNA	6	73	2	1.45162	2.55736	3.6631	0.0451203	6.21419e-4	0.163518	0.0229151
chr5	131783327	131783427	2720608	0	-	0.31	(0.28,0.32]	chr5	255730	383	INTRON	INTRON	FNIP1	ENSG00000217128.13	ENST00000510461.6:ENST00000307954.12:ENST00000307968.11:ENST00000511848.1	protein_coding	protein_coding	protein_coding	protein_coding	3	59	2	2.38391	2.55734	2.73077	0.0220748	0.0122525	0.115395	0.0969406
chr3	15838691	15838791	1624234	0	-	0.48	(0.476,0.515]	chr3	168034	240	INTRON	INTRON	ANKRD28	ENSG00000206560.12	ENST00000399451.6:ENST00000412318.5:ENST00000439830.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	132	2	2.41425	2.557325	2.7004	0.00197914	1.70478e-4	0.0404068	0.0113543
chr18	2711201	2711300	6865441	0	+	0.525253	(0.515,0.57]	chr18	680035	29	INTRON	INTRON	SMCHD1	ENSG00000101596.17	ENST00000320876.11:ENST00000688342.1:ENST00000693213.1:ENST00000577880.5:ENST00000584897.5:ENST00000581711.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	15	181	2	2.09072	2.5573	3.02388	0.00104303	7.43802e-6	0.0293983	0.0019418
chr3	196830871	196830969	1596418	0	+	0.387755	(0.378,0.408]	chr3	165382	26	UTR3	UTR3:EXON_MRNA	PAK2	ENSG00000180370.10	ENST00000327134.7	protein_coding	protein_coding	protein_coding	protein_coding	11	168	2	2.39902	2.55729	2.71556	8.46238e-4	1.60582e-4	0.0267232	0.0109124
chr5	181312331	181312431	2563722	0	+	0.55	(0.515,0.57]	chr5	245352	53	INTRON	INTRON	ENSG00000238035	ENSG00000238035.8	ENST00000499986.8	lncRNA	lncRNA	lncRNA	lncRNA	15	182	2	2.23496	2.557265	2.87957	3.51338e-4	3.1816e-5	0.0167276	0.00471653
chr6	20414628	20414728	2827575	0	+	0.41	(0.408,0.44]	chr6	265575	104	INTRON	INTRON	E2F3	ENSG00000112242.16	ENST00000346618.8:ENST00000535432.2	protein_coding	protein_coding	protein_coding	protein_coding	6	87	2	2.35743	2.55725	2.75707	0.00317496	0.00206746	0.0503542	0.0421756
chr8	129498062	129498162	4060262	0	-	0.25	[0,0.28]	chr8	369642	29	INTRON	INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1:ENST00000676273.1:ENST00000667643.1:ENST00000668791.1:ENST00000663716.1:ENST00000663572.1:ENST00000676148.1:ENST00000667962.1:ENST00000674877.1:ENST00000675316.1:ENST00000674656.1:ENST00000446592.7:ENST00000667341.1:ENST00000675186.1:ENST00000652971.1:ENST00000661447.1:ENST00000674863.1:ENST00000675498.1:ENST00000675527.1:ENST00000676108.1:ENST00000657647.1:ENST00000675589.1:ENST00000675913.1:ENST00000675109.1:ENST00000671632.1:ENST00000671311.1:ENST00000676099.1:ENST00000660652.1:ENST00000675522.1:ENST00000675183.1:ENST00000658861.1:ENST00000663991.1:ENST00000675044.1:ENST00000675435.1:ENST00000674639.1:ENST00000676069.1:ENST00000675532.1:ENST00000674762.1:ENST00000523151.6:ENST00000675948.1:ENST00000665364.1:ENST00000657251.1:ENST00000675166.1:ENST00000674883.1:ENST00000675867.1:ENST00000674580.1:ENST00000675393.1:ENST00000520048.1:ENST00000674906.1:ENST00000676030.1:ENST00000670588.1:ENST00000675072.1:ENST00000664936.1:ENST00000652914.1:ENST00000657069.1	lncRNA	lncRNA	lncRNA	lncRNA	5	117	2	1.99345	2.557245	3.12104	0.0211881	0.00141462	0.123133	0.0340865
chr4	1877128	1877227	1910627	0	+	0.292929	(0.28,0.32]	chr4	191707	52	INTRON	INTRON	NSD2	ENSG00000109685.19	ENST00000508803.6:ENST00000507820.5:ENST00000508355.5:ENST00000514045.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	59	2	2.24061	2.5572150000000002	2.87382	0.0194267	0.014868	0.119831	0.0989021
chr8	65604005	65604102	3959406	0	-	0.360825	(0.35,0.378]	chr8	363250	17	UTR3	UTR3:EXON_MRNA	ARMC1	ENSG00000104442.10	ENST00000276569.8:ENST00000458464.3	protein_coding	protein_coding	protein_coding	protein_coding	4	69	2	2.52395	2.557205	2.59046	0.00824736	0.00528327	0.0773378	0.0656295
chr10	73379693	73379778	4649063	0	-	0.4	(0.378,0.408]	chr10	427746	3	SS5_PROX	SS5_PROX:INTRON	ANXA7	ENSG00000138279.16	ENST00000372921.10:ENST00000372919.8	protein_coding	protein_coding	protein_coding	protein_coding	6	95	2	2.51043	2.55703	2.60363	0.00304007	0.00153353	0.0493883	0.0361717
chr20	62931896	62931996	7362510	0	-	0.31	(0.28,0.32]	chr20	751216	27	INTRON	INTRON	DIDO1	ENSG00000101191.17	ENST00000266070.8:ENST00000370371.8	protein_coding	protein_coding	protein_coding	protein_coding	3	60	2	1.76293	2.557005	3.35108	0.0766478	0.00221345	0.196164	0.0435144
chr6	158564228	158564328	3021640	0	+	0.58	(0.57,1]	chr6	281792	36	INTRON	INTRON	TMEM181	ENSG00000146433.10	ENST00000367090.4:ENST00000684151.1	protein_coding	protein_coding	protein_coding	protein_coding	5	40	2	2.52633	2.55683	2.58733	0.00454222	0.0018535	0.0595107	0.039946
chr1	15891651	15891751	35104	0	+	0.47	(0.44,0.476]	chr1	4272	146	INTRON	INTRON	SPEN	ENSG00000065526.12	ENST00000673875.1:ENST00000375759.8:ENST00000438066.1:ENST00000442985.1	protein_coding	protein_coding	protein_coding	protein_coding	7	104	2	2.41628	2.5568150000000003	2.69735	0.00156262	0.00125459	0.0365263	0.0323608
chr22	49584754	49584854	7601927	0	-	0.39	(0.378,0.408]	chr22	778566	1432	INTRON	INTRON	MIR3667HG	ENSG00000188511.13	ENST00000414287.5:ENST00000416411.1	lncRNA	lncRNA	lncRNA	lncRNA	5	79	2	2.31181	2.55668	2.80155	0.00548372	0.00278307	0.0671431	0.0469265
chr1	8622421	8622520	371827	0	-	0.313131	(0.28,0.32]	chr1	43527	74	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000400907.6:ENST00000656437.1:ENST00000659924.1:ENST00000480342.5:ENST00000514428.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	60	2	2.14002	2.556675	2.97333	0.0304107	0.00857834	0.130461	0.083729
chr6	149680657	149680757	3246358	0	-	0.39	(0.378,0.408]	chr6	301628	2	SS3_PROX	SS3_PROX:INTRON	LATS1	ENSG00000131023.13	ENST00000543571.6:ENST00000253339.9:ENST00000441107.5:ENST00000542747.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	49	2	1.88729	2.55664	3.22599	0.0532327	0.00288652	0.162538	0.0494641
chrX	13375610	13375710	7622716	0	+	0.4	(0.378,0.408]	chrX	780367	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	LINC01203	ENSG00000226985.7	ENST00000669963.1:ENST00000661545.1:ENST00000659526.1:ENST00000656410.1:ENST00000661104.1:ENST00000456091.2:ENST00000655502.1:ENST00000671651.1:ENST00000656979.1:ENST00000656271.1:ENST00000661629.1:ENST00000661464.1:ENST00000668192.1:ENST00000665887.1:ENST00000659191.1:ENST00000667868.1:ENST00000653729.1:ENST00000656111.1:ENST00000667532.1:ENST00000660305.1	lncRNA	lncRNA	lncRNA	lncRNA	5	80	2	2.36673	2.5565949999999997	2.74646	0.00539899	0.00271684	0.064414	0.0481064
chr6	166973088	166973188	3264369	0	-	0.46	(0.44,0.476]	chr6	303066	3	SS3_PROX	SS3_PROX:INTRON	ENSG00000227598	ENSG00000227598.1	ENST00000444102.1	lncRNA	lncRNA	lncRNA	lncRNA	4	65	2	2.33272	2.55659	2.78046	0.0129984	0.0028389	0.0991656	0.0473151
chr2	181917900	181918000	937222	0	+	0.42	(0.408,0.44]	chr2	102725	10	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	ITPRID2	ENSG00000138434.17	ENST00000431877.7:ENST00000320370.11:ENST00000409001.5:ENST00000440623.5:ENST00000454579.5:ENST00000416081.5:ENST00000491720.5:ENST00000409136.5:ENST00000491866.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	66	2	1.69979	2.55651	3.41323	0.0310346	0.00129989	0.13151	0.0333764
chr8	140525549	140525649	4075436	0	-	0.48	(0.476,0.515]	chr8	370170	55	UTR3	UTR3:EXON_MRNA	AGO2	ENSG00000123908.12	ENST00000220592.10	protein_coding	protein_coding	protein_coding	protein_coding	4	58	2	2.41328	2.556475	2.69967	0.0195838	0.00355364	0.109483	0.0547657
chr11	130293296	130293395	5053650	0	-	0.393939	(0.378,0.408]	chr11	476969	310	INTRON	INTRON	ZBTB44	ENSG00000196323.14	ENST00000357899.9:ENST00000527478.6:ENST00000445008.6:ENST00000525842.5:ENST00000397753.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	49	2	2.05897	2.55645	3.05393	0.0339294	0.00551532	0.134508	0.0672816
chrX	151406623	151406721	7735206	0	+	0.5	(0.476,0.515]	chrX	791463	17	UTR3	UTR3:EXON_MRNA	VMA21	ENSG00000160131.14	ENST00000330374.7	protein_coding	protein_coding	protein_coding	protein_coding	5	65	2	1.71266	2.5563450000000003	3.40003	0.0293304	0.00139193	0.128055	0.0341261
chr19	1798858	1798957	7113309	0	-	0.575758	(0.57,1]	chr19	714742	2	UTR3	UTR3:EXON_MRNA:INTRON	ATP8B3	ENSG00000130270.16	ENST00000310127.10:ENST00000531925.5:ENST00000525591.5:ENST00000526092.6:ENST00000533107.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	46	2	1.95484	2.556295	3.15775	0.0113205	2.72513e-4	0.0948452	0.0151392
chr12	104349909	104350009	5210660	0	+	0.36	(0.35,0.378]	chr12	493302	16	UTR3	UTR3:EXON_MRNA	TXNRD1	ENSG00000198431.17	ENST00000525566.6:ENST00000503506.6:ENST00000526691.5:ENST00000526390.5:ENST00000527688.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	51	2	2.44701	2.55624	2.66547	0.0233639	0.00900997	0.118323	0.0851009
chr6	87165696	87165795	2913358	0	+	0.272727	[0,0.28]	chr6	275276	96	INTRON	INTRON	ZNF292	ENSG00000188994.13	ENST00000392985.3:ENST00000369577.8:ENST00000369578.6:ENST00000518845.1:ENST00000339907.8:ENST00000496806.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	68	2	2.06132	2.5562300000000002	3.05114	0.0408268	0.0075493	0.1451	0.0773151
chr1	23159968	23160068	398929	0	-	0.29	(0.28,0.32]	chr1	47812	264	INTRON	INTRON	LUZP1	ENSG00000169641.14	ENST00000302291.8:ENST00000314174.5:ENST00000471849.5	protein_coding	protein_coding	protein_coding	protein_coding	4	81	2	2.51426	2.556215	2.59817	0.00781326	0.00753816	0.0788246	0.0748659
chr15	34534273	34534373	6133397	0	-	0.36	(0.35,0.378]	chr15	584352	1	SS3_PROX	SS3_PROX:INTRON	GOLGA8B	ENSG00000215252.12	ENST00000683415.1:ENST00000342314.9:ENST00000569100.5:ENST00000484716.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	12	148	2	1.84774	2.55619	3.26464	0.00306702	4.0384e-4	0.0509893	0.0185763
chr16	23875908	23876007	6324159	0	+	0.474747	(0.44,0.476]	chr16	605697	67	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000645517.1:ENST00000498739.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	76	2	1.98938	2.55618	3.12298	0.0198602	4.66209e-4	0.109608	0.0195589
chr10	96564114	96564212	4674200	0	-	0.479592	(0.476,0.515]	chr10	430715	16	INTRON	INTRON	TM9SF3	ENSG00000077147.16	ENST00000371142.9:ENST00000649367.1:ENST00000443638.1:ENST00000464654.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	35	2	2.23335	2.55607	2.87879	0.0634557	0.00999149	0.177047	0.0879541
chr14	99401055	99401154	5966417	0	-	0.494949	(0.476,0.515]	chr14	566880	4	INTRON	INTRON	SETD3	ENSG00000183576.13	ENST00000331768.10:ENST00000446066.5:ENST00000489770.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	35	2	2.23335	2.55607	2.87879	0.0634557	0.00999149	0.177047	0.0879541
chr17	81575072	81575171	6848969	0	-	0.515152	(0.476,0.515]	chr17	678158	26	INTRON	INTRON	NPLOC4	ENSG00000182446.14	ENST00000331134.11:ENST00000374747.9:ENST00000574897.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	35	2	2.23335	2.55607	2.87879	0.0634557	0.00999149	0.177047	0.0879541
chr18	12350784	12350884	6946868	0	-	0.48	(0.476,0.515]	chr18	687211	3	SS5_PROX	SS5_PROX:INTRON	AFG3L2	ENSG00000141385.12	ENST00000269143.8:ENST00000691970.1:ENST00000691179.1:ENST00000687337.1:ENST00000692988.1:ENST00000692497.1:ENST00000688199.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	35	2	2.23335	2.55607	2.87879	0.0634557	0.00999149	0.177047	0.0879541
chr20	35396987	35397087	7335059	0	-	0.48	(0.476,0.515]	chr20	747197	24	INTRON	INTRON	UQCC1	ENSG00000101019.22	ENST00000374380.6:ENST00000374394.7:ENST00000374384.6:ENST00000359226.6:ENST00000349714.9:ENST00000457259.5:ENST00000374385.10:ENST00000453855.5:ENST00000424405.5:ENST00000443429.5:ENST00000438533.5:ENST00000397554.5:ENST00000491125.5:ENST00000491040.5:ENST00000397553.6:ENST00000495752.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	35	2	2.23335	2.55607	2.87879	0.0634557	0.00999149	0.177047	0.0879541
chr7	152393652	152393752	3680870	0	-	0.49	(0.476,0.515]	chr7	341660	346	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000682301.1:ENST00000452749.2:ENST00000680867.1:ENST00000683800.1:ENST00000684278.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	35	2	2.23335	2.55607	2.87879	0.0634557	0.00999149	0.177047	0.0879541
chr11	663083	663183	4889154	0	-	0.45	(0.44,0.476]	chr11	457709	29	INTRON	INTRON	DEAF1	ENSG00000177030.19	ENST00000382409.4:ENST00000527170.5:ENST00000685854.1:ENST00000683307.1:ENST00000528864.6:ENST00000525626.6:ENST00000682936.1:ENST00000690068.1:ENST00000692634.1:ENST00000687329.1:ENST00000686001.1:ENST00000689835.1:ENST00000525904.5:ENST00000530813.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	65	2	2.08453	2.55602	3.02751	0.00715968	0.00689	0.0750118	0.0723634
chr4	10101813	10101912	2107275	0	-	0.444444	(0.44,0.476]	chr4	208480	23	INTRON	INTRON	WDR1	ENSG00000071127.17	ENST00000499869.7:ENST00000382451.6:ENST00000382452.6:ENST00000502702.5:ENST00000508079.1:ENST00000264785.11:ENST00000505851.5:ENST00000514319.5:ENST00000515018.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	76	2	2.28847	2.55599	2.82351	0.00692113	0.00191049	0.0718189	0.0403772
chr4	23023164	23023263	1928354	0	+	0.353535	(0.35,0.378]	chr4	193937	179	INTRON	INTRON	ENSG00000248837	ENSG00000248837.7	ENST00000659942.1:ENST00000655325.1:ENST00000655182.1:ENST00000660103.1:ENST00000506425.2:ENST00000652324.1:ENST00000653008.1:ENST00000654546.1:ENST00000666412.1:ENST00000511453.5:ENST00000667179.1:ENST00000655768.1:ENST00000661585.1:ENST00000660296.1:ENST00000663529.1:ENST00000653872.1:ENST00000660370.1:ENST00000667156.1:ENST00000658109.1:ENST00000653188.1:ENST00000662431.1:ENST00000654588.1:ENST00000666579.1:ENST00000503017.2:ENST00000665739.1:ENST00000671537.1:ENST00000663348.1	lncRNA	lncRNA	lncRNA	lncRNA	3	51	2	2.17079	2.55595	2.94111	0.0225978	0.0104563	0.124921	0.0855102
chr7	92831390	92831490	3573209	0	-	0.37	(0.35,0.378]	chr7	332810	562	INTRON	INTRON	CDK6	ENSG00000105810.10	ENST00000424848.3:ENST00000265734.8	protein_coding	protein_coding	protein_coding	protein_coding	3	51	2	2.17079	2.55595	2.94111	0.0225978	0.0104563	0.124921	0.0855102
chr22	16801313	16801412	7546413	0	-	0.494949	(0.476,0.515]	chr22	771321	9	INTRON	INTRON	XKR3	ENSG00000172967.8	ENST00000331428.5:ENST00000684488.1	protein_coding	protein_coding	protein_coding	protein_coding	6	72	2	1.43644	2.55594	3.67544	0.047372	5.51624e-4	0.169265	0.0216014
chr20	49047519	49047618	7283797	0	+	0.292929	(0.28,0.32]	chr20	740813	7	INTRON	INTRON	CSE1L	ENSG00000124207.17	ENST00000396192.7:ENST00000262982.3	protein_coding	protein_coding	protein_coding	protein_coding	2	45	2	2.38101	2.5558899999999998	2.73077	0.0456017	0.0220748	0.164236	0.115395
chr7	10726804	10726904	3484048	0	-	0.43	(0.408,0.44]	chr7	325772	1649	INTRON	INTRON	MGC4859	ENSG00000283117.1	ENST00000634803.1	lncRNA	lncRNA	lncRNA	lncRNA	5	76	2	2.53861	2.55578	2.57295	0.00640423	0.00202413	0.0694534	0.0416117
chr17	37282766	37282866	6761796	0	-	0.42	(0.408,0.44]	chr17	664919	1	SS5_PROX	SS5_PROX:INTRON	ACACA	ENSG00000278540.5	ENST00000616317.5:ENST00000614428.4:ENST00000612895.4:ENST00000617649.4:ENST00000613146.4:ENST00000615229.4:ENST00000621960.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	64	2	2.49983	2.555765	2.6117	0.00713527	0.00555224	0.0756118	0.0648867
chr7	111436175	111436275	3622848	0	-	0.29	(0.28,0.32]	chr7	337108	434	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000452895.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding	11	190	2	1.96113	2.555765	3.1504	0.00508116	1.32696e-4	0.0623813	0.00992715
chr12	49385854	49385954	5133132	0	+	0.45	(0.44,0.476]	chr12	483963	142	INTRON	INTRON	SPATS2	ENSG00000123352.18	ENST00000550997.5:ENST00000549538.5:ENST00000549412.5:ENST00000550643.5:ENST00000548654.5:ENST00000548710.5:ENST00000549179.5:ENST00000548377.5:ENST00000549298.5:ENST00000552918.6:ENST00000549375.5:ENST00000553127.5:ENST00000321898.10:ENST00000551540.5:ENST00000548777.5:ENST00000552171.1:ENST00000547865.5:ENST00000548388.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	47	2	2.02558	2.555745	3.08591	0.0363567	0.00481262	0.138959	0.0638089
chr1	61147326	61147426	128045	0	+	0.54	(0.515,0.57]	chr1	14778	144	INTRON	INTRON	NFIA	ENSG00000162599.17	ENST00000371191.5:ENST00000664495.1:ENST00000476646.5:ENST00000407417.7:ENST00000479364.1:ENST00000371189.8:ENST00000670151.1:ENST00000664149.1:ENST00000662015.1:ENST00000403491.8:ENST00000371187.7:ENST00000485903.6:ENST00000371185.6:ENST00000371184.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	49	2	1.63184	2.555715	3.47959	0.0545832	8.38022e-4	0.165292	0.0263691
chr15	28611658	28611758	5988132	0	+	0.55	(0.515,0.57]	chr15	569255	2	SS3_PROX	SS3_PROX:INTRON	HERC2P9	ENSG00000206149.11	ENST00000689985.1:ENST00000688694.1:ENST00000529537.2:ENST00000529624.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	4	54	2	2.53845	2.555715	2.57298	0.00632226	0.00506495	0.0687526	0.0646039
chr16	88578823	88578923	6418346	0	+	0.52	(0.515,0.57]	chr16	615792	7	INTRON	INTRON	ZC3H18	ENSG00000158545.16	ENST00000301011.10:ENST00000452588.6:ENST00000569435.5	protein_coding	protein_coding	protein_coding	protein_coding	4	54	2	2.53845	2.555715	2.57298	0.00632226	0.00506495	0.0687526	0.0646039
chr19	1389904	1390000	6995029	0	+	0.5625	(0.515,0.57]	chr19	693148	11	EXON_MRNA	EXON_MRNA:INTRON	NDUFS7	ENSG00000115286.21	ENST00000546283.5:ENST00000545446.5:ENST00000543289.5:ENST00000539480.5:ENST00000538662.5:ENST00000313408.11:ENST00000436115.6:ENST00000233627.14:ENST00000534853.5:ENST00000546172.7:ENST00000414651.3:ENST00000538929.5:ENST00000622587.4:ENST00000538523.5:ENST00000540530.5:ENST00000535382.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	49	2	1.63184	2.555715	3.47959	0.0545832	8.38022e-4	0.165292	0.0263691
chr2	235606218	235606318	1042459	0	+	0.52	(0.515,0.57]	chr2	111222	813	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1:ENST00000402604.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	54	2	2.53845	2.555715	2.57298	0.00632226	0.00506495	0.0687526	0.0646039
chr5	1809253	1809352	2314616	0	+	0.565657	(0.515,0.57]	chr5	224094	65	INTRON	INTRON	NDUFS6	ENSG00000145494.12	ENST00000274137.10:ENST00000469176.1	protein_coding	protein_coding	protein_coding	protein_coding	4	54	2	2.53845	2.555715	2.57298	0.00632226	0.00506495	0.0687526	0.0646039
chr7	152058304	152058404	3449837	0	+	0.42	(0.408,0.44]	chr7	322435	302	INTRON	INTRON	GALNT11	ENSG00000178234.13	ENST00000430044.7:ENST00000482812.1:ENST00000431668.1:ENST00000446096.5:ENST00000447778.5:ENST00000423337.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	76	2	2.38928	2.5556799999999997	2.72208	0.0039105	0.00364449	0.0569957	0.0535094
chr18	12311153	12311253	6874798	0	+	0.47	(0.44,0.476]	chr18	681092	1	SS5_PROX	SS5_PROX:INTRON	TUBB6	ENSG00000176014.13	ENST00000590693.5:ENST00000590103.5:ENST00000591909.5:ENST00000317702.10:ENST00000417736.2:ENST00000586810.5:ENST00000586653.5:ENST00000590388.5:ENST00000592683.5:ENST00000590967.5:ENST00000591208.1:ENST00000591463.1:ENST00000586691.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	56	2	2.03266	2.55564	3.07862	0.0155853	0.0060153	0.109411	0.0674604
chrX	154712801	154712877	7914934	0	-	0.447368	(0.44,0.476]	chrX	806096	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GAB3	ENSG00000160219.12	ENST00000496390.5:ENST00000424127.3:ENST00000369575.7:ENST00000369568.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	89	2	1.60467	2.55563	3.50659	0.0411383	5.83536e-5	0.1451	0.00625795
chr12	112091164	112091264	5415250	0	-	0.51	(0.476,0.515]	chr12	517241	3	SS3_PROX	SS3_PROX:INTRON	NAA25	ENSG00000111300.10	ENST00000261745.9:ENST00000552527.5:ENST00000549711.5:ENST00000551858.1:ENST00000547133.1:ENST00000548627.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	47	2	1.86492	2.55561	3.2463	0.0550347	0.00262374	0.165463	0.0470772
chr1	117626809	117626907	199133	0	+	0.479592	(0.476,0.515]	chr1	22011	29	UTR3	UTR3:EXON_MRNA	TENT5C	ENSG00000183508.5	ENST00000369448.4	protein_coding	protein_coding	protein_coding	protein_coding	2	35	2	2.47949	2.5555849999999998	2.63168	0.0326974	0.0237106	0.145164	0.118716
chr10	7164210	7164310	4550443	0	-	0.48	(0.476,0.515]	chr10	420134	3	SS3_PROX	SS3_PROX:INTRON	SFMBT2	ENSG00000198879.13	ENST00000397167.6:ENST00000361972.8:ENST00000684547.1:ENST00000683762.1:ENST00000673876.1	protein_coding	protein_coding	protein_coding	protein_coding	2	35	2	2.47949	2.5555849999999998	2.63168	0.0326974	0.0237106	0.145164	0.118716
chr10	7192991	7193090	4550739	0	-	0.484848	(0.476,0.515]	chr10	420164	39	INTRON	INTRON	SFMBT2	ENSG00000198879.13	ENST00000397167.6:ENST00000361972.8:ENST00000684547.1:ENST00000683762.1:ENST00000673876.1:ENST00000682896.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	35	2	2.47949	2.5555849999999998	2.63168	0.0326974	0.0237106	0.145164	0.118716
chr13	50443929	50444029	5494623	0	+	0.48	(0.476,0.515]	chr13	526158	100	INTRON	INTRON	DLEU1	ENSG00000176124.15	ENST00000467721.5:ENST00000468522.5:ENST00000490577.5:ENST00000491341.5:ENST00000491615.5:ENST00000463474.7:ENST00000468168.5:ENST00000476738.5:ENST00000461527.7:ENST00000485007.5:ENST00000475913.5:ENST00000470726.7:ENST00000479420.5:ENST00000474630.6:ENST00000491482.5:ENST00000647700.1:ENST00000484869.6:ENST00000469095.6:ENST00000462427.2:ENST00000470593.5:ENST00000472136.5:ENST00000498557.5:ENST00000460525.6	lncRNA	lncRNA	lncRNA	lncRNA	2	35	2	2.47949	2.5555849999999998	2.63168	0.0326974	0.0237106	0.145164	0.118716
chr14	76340282	76340382	5797402	0	+	0.51	(0.476,0.515]	chr14	549230	290	INTRON	INTRON	ESRRB	ENSG00000119715.15	ENST00000512784.6	protein_coding	protein_coding	protein_coding	protein_coding	2	35	2	2.47949	2.5555849999999998	2.63168	0.0326974	0.0237106	0.145164	0.118716
chr15	28276000	28276099	6123599	0	-	0.494949	(0.476,0.515]	chr15	583381	6	INTRON	INTRON	HERC2	ENSG00000128731.18	ENST00000261609.13:ENST00000564734.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	35	2	2.47949	2.5555849999999998	2.63168	0.0326974	0.0237106	0.145164	0.118716
chr2	108545367	108545467	845955	0	+	0.49	(0.476,0.515]	chr2	94661	104	INTRON	INTRON	LIMS1	ENSG00000169756.17	ENST00000695516.1:ENST00000544547.6:ENST00000695517.1	protein_coding	protein_coding	protein_coding	protein_coding	2	35	2	2.47949	2.5555849999999998	2.63168	0.0326974	0.0237106	0.145164	0.118716
chr3	136747197	136747297	1828410	0	-	0.48	(0.476,0.515]	chr3	183745	1159	INTRON	INTRON	STAG1	ENSG00000118007.13	ENST00000383202.7:ENST00000236698.9:ENST00000434713.6:ENST00000483235.5:ENST00000629124.2:ENST00000487065.5:ENST00000480733.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	35	2	2.47949	2.5555849999999998	2.63168	0.0326974	0.0237106	0.145164	0.118716
chr1	63408697	63408794	132885	0	+	0.340206	(0.32,0.35]	chr1	15075	12	INTRON	INTRON	ALG6	ENSG00000088035.18	ENST00000647818.1:ENST00000603108.6:ENST00000648964.1:ENST00000263440.6:ENST00000650494.1:ENST00000649570.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	42	2	2.31405	2.55556	2.79707	0.0517107	0.0170923	0.176696	0.104099
chr10	68417355	68417453	4639205	0	-	0.326531	(0.32,0.35]	chr10	426640	1	INTRON	INTRON	DNA2	ENSG00000138346.15	ENST00000358410.8:ENST00000551118.6:ENST00000399179.6:ENST00000399180.3:ENST00000440722.2:ENST00000550545.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	42	2	2.31405	2.55556	2.79707	0.0517107	0.0170923	0.176696	0.104099
chr16	69304591	69304690	6379008	0	+	0.323232	(0.32,0.35]	chr16	613048	38	UTR3	UTR3:EXON_MRNA:INTRON	SNTB2:ENSG00000260914	ENSG00000168807.17:ENSG00000260914.3	ENST00000336278.9:ENST00000570054.3	protein_coding	protein_coding	protein_coding	protein_coding	2	42	2	2.31405	2.55556	2.79707	0.0517107	0.0170923	0.176696	0.104099
chr21	9332881	9332981	7367460	0	+	0.35	(0.32,0.35]	chr21	751926	12	INTRON	INTRON	ENSG00000278932	ENSG00000278932.5	ENST00000622961.3:ENST00000686553.1:ENST00000691955.1:ENST00000625153.3:ENST00000692626.1:ENST00000685951.1:ENST00000686510.1:ENST00000692884.1	lncRNA	lncRNA	lncRNA	lncRNA	2	42	2	2.31405	2.55556	2.79707	0.0517107	0.0170923	0.176696	0.104099
chr1	1528262	1528362	2030	0	+	0.58	(0.57,1]	chr1	518	4	SS5_PROX	SS5_PROX:INTRON	ATAD3A	ENSG00000197785.14	ENST00000378756.8:ENST00000672388.1:ENST00000378755.9:ENST00000339113.9:ENST00000536055.6:ENST00000400830.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	51	2	1.80424	2.555535	3.30683	0.0129439	1.13407e-4	0.0991015	0.00957524
chr20	35717105	35717205	7336293	0	-	0.5	(0.476,0.515]	chr20	747445	3	SS3_PROX	SS3_PROX:INTRON	RBM39	ENSG00000131051.24	ENST00000253363.11:ENST00000639702.1:ENST00000656873.1:ENST00000463004.5:ENST00000361162.10:ENST00000461283.5:ENST00000403542.6:ENST00000338163.10:ENST00000528062.7:ENST00000429968.5:ENST00000444878.5:ENST00000665058.1:ENST00000492779.5:ENST00000448303.5:ENST00000615771.5:ENST00000490484.7:ENST00000494274.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	109	2	2.41217	2.5555149999999998	2.69886	0.00385209	4.92648e-4	0.0542786	0.0200992
chr6	110891670	110891768	2939117	0	+	0.418367	(0.408,0.44]	chr6	276780	10	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	AMD1	ENSG00000123505.19	ENST00000451850.6:ENST00000675380.1:ENST00000368882.8:ENST00000672937.2:ENST00000368885.8:ENST00000368877.9:ENST00000368876.2:ENST00000612642.4:ENST00000619590.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	72	2	1.58622	2.555465	3.52471	0.0291748	0.00112428	0.141552	0.0306963
chr8	129470165	129470265	4059976	0	-	0.25	[0,0.28]	chr8	369602	129	INTRON	INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1:ENST00000676273.1:ENST00000667643.1:ENST00000668791.1:ENST00000663716.1:ENST00000663572.1:ENST00000676148.1:ENST00000667962.1:ENST00000674877.1:ENST00000675316.1:ENST00000674656.1:ENST00000446592.7:ENST00000667341.1:ENST00000675186.1:ENST00000652971.1:ENST00000661447.1:ENST00000674863.1:ENST00000675498.1:ENST00000675527.1:ENST00000676108.1:ENST00000657647.1:ENST00000675589.1:ENST00000675913.1:ENST00000675109.1:ENST00000671632.1:ENST00000671311.1:ENST00000676099.1:ENST00000660652.1:ENST00000675522.1:ENST00000675183.1:ENST00000658861.1:ENST00000663991.1:ENST00000675044.1:ENST00000675435.1:ENST00000674639.1:ENST00000676069.1:ENST00000675532.1:ENST00000674762.1:ENST00000523151.6:ENST00000675948.1:ENST00000665364.1:ENST00000657251.1:ENST00000675166.1:ENST00000674883.1:ENST00000675867.1:ENST00000674580.1:ENST00000675393.1:ENST00000520048.1:ENST00000674906.1:ENST00000676030.1:ENST00000670588.1:ENST00000675072.1:ENST00000664936.1:ENST00000652914.1:ENST00000657069.1	lncRNA	lncRNA	lncRNA	lncRNA	5	111	2	2.31716	2.555395	2.79363	0.00702731	0.00466792	0.0754576	0.0600108
chr2	110663679	110663778	1206717	0	-	0.464646	(0.44,0.476]	chr2	128694	13	INTRON	INTRON	BUB1	ENSG00000169679.15	ENST00000302759.11:ENST00000535254.6:ENST00000409311.5:ENST00000466333.5:ENST00000666956.1:ENST00000465029.5:ENST00000477481.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	66	2	1.49356	2.55537	3.61718	0.0537505	7.37432e-4	0.180803	0.02495
chr11	63688470	63688570	4799983	0	+	0.44	(0.408,0.44]	chr11	444936	63	INTRON	INTRON	RTN3	ENSG00000133318.14	ENST00000341307.6:ENST00000356000.7:ENST00000542238.5:ENST00000538995.1:ENST00000339997.8:ENST00000540798.5:ENST00000537981.5:ENST00000377819.10:ENST00000536011.5:ENST00000543123.1:ENST00000543552.5:ENST00000545432.5:ENST00000338850.5:ENST00000354497.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	47	2	2.39162	2.555365	2.71911	0.0189489	0.0105837	0.108861	0.0911864
chr11	66747386	66747484	4811368	0	+	0.418367	(0.408,0.44]	chr11	447930	21	INTRON	INTRON	C11orf80	ENSG00000173715.18	ENST00000534325.5:ENST00000524551.5:ENST00000525908.6:ENST00000540737.7:ENST00000527634.5:ENST00000527368.5:ENST00000531400.6:ENST00000642265.1:ENST00000532565.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	47	2	2.39162	2.555365	2.71911	0.0189489	0.0105837	0.108861	0.0911864
chr7	128995601	128995700	3635982	0	-	0.434343	(0.408,0.44]	chr7	338100	13	INTRON	INTRON	TNPO3	ENSG00000064419.14	ENST00000627585.2:ENST00000265388.10:ENST00000471234.5:ENST00000482320.5:ENST00000471166.1	protein_coding	protein_coding	protein_coding	protein_coding	3	47	2	2.39162	2.555365	2.71911	0.0189489	0.0105837	0.108861	0.0911864
chr1	246061364	246061464	676245	0	-	0.39	(0.378,0.408]	chr1	79717	79	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000391836.3:ENST00000464398.1:ENST00000453676.5:ENST00000462422.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	83	2	1.42554	2.555355	3.68517	0.0425654	3.90172e-4	0.148082	0.0177751
chr17	43121357	43121457	6775831	0	-	0.5	(0.476,0.515]	chr17	667846	4	SS5_PROX	SS5_PROX:INTRON	BRCA1	ENSG00000012048.23	ENST00000471181.7:ENST00000352993.7:ENST00000357654.9:ENST00000468300.5:ENST00000586385.5:ENST00000591534.5:ENST00000591849.5:ENST00000493795.5:ENST00000491747.6:ENST00000461221.5:ENST00000478531.5:ENST00000493919.5:ENST00000354071.7:ENST00000634433.1:ENST00000470026.5:ENST00000652672.1:ENST00000477152.5:ENST00000494123.5:ENST00000492859.5:ENST00000497488.1:ENST00000642945.1:ENST00000476777.5:ENST00000461798.5:ENST00000489037.1:ENST00000644555.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	47	2	2.16377	2.555345	2.94692	0.0243026	0.00794331	0.12011	0.0797304
chr5	81294386	81294486	2662847	0	-	0.51	(0.476,0.515]	chr5	252321	432	INTRON	INTRON	CKMT2-AS1	ENSG00000247572.9	ENST00000663674.1:ENST00000503483.6:ENST00000511495.1:ENST00000512287.1:ENST00000502041.3:ENST00000690798.1:ENST00000670957.1:ENST00000660242.1:ENST00000500148.6:ENST00000669977.1:ENST00000656836.1:ENST00000501927.2:ENST00000505295.1	lncRNA	lncRNA	lncRNA	lncRNA	3	47	2	2.16377	2.555345	2.94692	0.0243026	0.00794331	0.12011	0.0797304
chr7	10733301	10733401	3484113	0	-	0.4	(0.378,0.408]	chr7	325772	1714	INTRON	INTRON	MGC4859	ENSG00000283117.1	ENST00000634803.1	lncRNA	lncRNA	lncRNA	lncRNA	8	120	2	2.37292	2.55533	2.73774	0.00113735	0.00105162	0.0307766	0.0299022
chr7	73205727	73205804	3331541	0	+	0.324675	(0.32,0.35]	chr7	309858	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GTF2IP4	ENSG00000233369.7	ENST00000544802.5	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	10	141	2	1.86015	2.55531	3.25047	0.00474542	5.01598e-4	0.0635285	0.0207034
chr1	8582892	8582992	371429	0	-	0.43	(0.408,0.44]	chr1	43517	250	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000400907.6:ENST00000656437.1:ENST00000659924.1:ENST00000480342.5:ENST00000469251.1:ENST00000514428.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	48	2	2.21857	2.55525	2.89193	0.0209591	0.00950364	0.112046	0.0863579
chr6	43585597	43585695	2871572	0	+	0.397959	(0.378,0.408]	chr6	272265	21	INTRON	INTRON	POLH	ENSG00000170734.12	ENST00000372236.9:ENST00000372226.1:ENST00000443535.1	protein_coding	protein_coding	protein_coding	protein_coding	6	90	2	2.40903	2.5552200000000003	2.70141	0.00411614	0.00165739	0.0564981	0.0376447
chr15	68117065	68117165	6056584	0	+	0.41	(0.408,0.44]	chr15	576567	288	INTRON	INTRON	PIAS1	ENSG00000033800.14	ENST00000564915.5:ENST00000249636.11:ENST00000562190.1:ENST00000545237.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	47	2	2.21238	2.5551649999999997	2.89795	0.0193525	0.0110735	0.119831	0.0873897
chr17	42500778	42500850	6611729	0	+	0.416667	(0.408,0.44]	chr17	644159	2	CDS	CDS:EXON_MRNA	ATP6V0A1	ENSG00000033627.17	ENST00000393829.6:ENST00000343619.9:ENST00000537728.5:ENST00000264649.10:ENST00000585525.5:ENST00000544137.5:ENST00000587510.5:ENST00000586201.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	47	2	2.21238	2.5551649999999997	2.89795	0.0193525	0.0110735	0.119831	0.0873897
chr6	104787613	104787713	3171759	0	-	0.42	(0.408,0.44]	chr6	295866	3	INTRON	INTRON	HACE1	ENSG00000085382.12	ENST00000262903.9:ENST00000416605.6:ENST00000369125.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	47	2	2.21238	2.5551649999999997	2.89795	0.0193525	0.0110735	0.119831	0.0873897
chr2	62390533	62390633	791235	0	+	0.51	(0.476,0.515]	chr2	88716	285	INTRON	INTRON	ENSG00000228541	ENSG00000228541.2	ENST00000689590.1:ENST00000687402.1	lncRNA	lncRNA	lncRNA	lncRNA	3	50	2	2.54157	2.5551250000000003	2.56868	0.0256676	0.00697457	0.133676	0.0718189
chr5	151803437	151803537	2522143	0	+	0.34	(0.32,0.35]	chr5	241368	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	G3BP1	ENSG00000145907.16	ENST00000678070.1:ENST00000678964.1:ENST00000678925.1:ENST00000394123.7:ENST00000676978.1:ENST00000679289.1:ENST00000677493.1:ENST00000676644.1:ENST00000677757.1:ENST00000522761.6:ENST00000676827.1:ENST00000520177.6:ENST00000676634.1:ENST00000678854.1:ENST00000676911.1:ENST00000356245.8:ENST00000678646.1:ENST00000677381.1:ENST00000678904.1:ENST00000678910.1:ENST00000678101.1:ENST00000677105.1:ENST00000678369.1:ENST00000678564.1:ENST00000677923.1:ENST00000677323.1:ENST00000677687.1:ENST00000679193.1:ENST00000678825.1:ENST00000678657.1:ENST00000676507.1:ENST00000678612.1:ENST00000676715.1:ENST00000676899.1:ENST00000677658.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	102	2	2.05211	2.5550949999999997	3.05808	0.0106769	7.67153e-4	0.0861859	0.0254532
chrX	71575692	71575792	7680399	0	+	0.28	[0,0.28]	chrX	786485	20	UTR3	UTR3:EXON_MRNA	OGT	ENSG00000147162.14	ENST00000373719.8	protein_coding	protein_coding	protein_coding	protein_coding	9	178	2	2.46134	2.555055	2.64877	0.00757778	5.05116e-4	0.0749063	0.0202328
chr2	32384370	32384469	731053	0	+	0.30303	(0.28,0.32]	chr2	84286	37	INTRON	INTRON	BIRC6	ENSG00000115760.15	ENST00000421745.7:ENST00000648282.1	protein_coding	protein_coding	protein_coding	protein_coding	3	60	2	2.51488	2.55496	2.59504	0.0380957	0.00582473	0.141678	0.0687439
chr17	81628628	81628728	6849525	0	-	0.37	(0.35,0.378]	chr17	678237	60	INTRON	INTRON	NPLOC4	ENSG00000182446.14	ENST00000331134.11:ENST00000374747.9:ENST00000574897.5:ENST00000625705.1:ENST00000570300.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	38	2	2.24535	2.55493	2.86451	0.0647516	0.0109111	0.179192	0.0923273
chr3	38377391	38377491	1399798	0	+	0.36	(0.35,0.378]	chr3	146858	4	SS5_PROX	SS5_PROX:INTRON	XYLB	ENSG00000093217.11	ENST00000207870.8:ENST00000650590.1:ENST00000424034.5:ENST00000649234.1:ENST00000472721.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	38	2	2.24535	2.55493	2.86451	0.0647516	0.0109111	0.179192	0.0923273
chr5	145745369	145745469	2745735	0	-	0.36	(0.35,0.378]	chr5	258674	407	INTRON	INTRON	PRELID2	ENSG00000186314.12	ENST00000510259.5:ENST00000510594.1:ENST00000515161.1	protein_coding	processed_transcript	protein_coding	processed_transcript	2	38	2	2.24535	2.55493	2.86451	0.0647516	0.0109111	0.179192	0.0923273
chr7	30144877	30144977	3300243	0	+	0.36	(0.35,0.378]	chr7	306448	68	INTRON	INTRON	MTURN	ENSG00000180354.16	ENST00000324453.13:ENST00000409688.1:ENST00000434060.1	protein_coding	protein_coding	protein_coding	protein_coding	2	38	2	2.24535	2.55493	2.86451	0.0647516	0.0109111	0.179192	0.0923273
chr3	172797134	172797234	1563696	0	+	0.45	(0.44,0.476]	chr3	161807	102	INTRON	INTRON	ECT2	ENSG00000114346.14	ENST00000232458.9:ENST00000540509.5:ENST00000392692.8:ENST00000417960.5:ENST00000441497.6	protein_coding	protein_coding	protein_coding	protein_coding	9	130	2	2.47804	2.55491	2.63178	0.00325838	1.35702e-4	0.0508595	0.0100405
chr10	101795085	101795183	4680734	0	-	0.346939	(0.32,0.35]	chr10	431970	7	INTRON	INTRON	OGA	ENSG00000198408.14	ENST00000439817.5:ENST00000361464.8:ENST00000357797.9:ENST00000482611.5:ENST00000479811.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	204	2	2.3904	2.554865	2.71933	0.00290171	4.44114e-5	0.0478075	0.00540591
chr7	10568474	10568574	3482464	0	-	0.38	(0.378,0.408]	chr7	325772	65	INTRON	INTRON	MGC4859	ENSG00000283117.1	ENST00000634803.1	lncRNA	lncRNA	lncRNA	lncRNA	9	138	2	2.34248	2.554825	2.76717	0.00173667	2.59679e-4	0.0375363	0.014326
chr17	81594728	81594826	6849169	0	-	0.530612	(0.515,0.57]	chr17	678168	53	INTRON	INTRON	NPLOC4	ENSG00000182446.14	ENST00000331134.11:ENST00000374747.9:ENST00000574897.5:ENST00000572351.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	17	208	2	2.21668	2.5548200000000003	2.89296	5.18732e-4	5.89405e-6	0.0209322	0.00170648
chr1	113942158	113942258	191925	0	+	0.47	(0.44,0.476]	chr1	21149	3	INTRON	INTRON	HIPK1	ENSG00000163349.22	ENST00000426820.7:ENST00000626993.2:ENST00000369559.8:ENST00000369558.5:ENST00000369561.8:ENST00000369555.6	protein_coding	protein_coding	protein_coding	protein_coding	4	56	2	2.08211	2.55481	3.02751	0.0130715	0.00715968	0.0996047	0.0723634
chr7	75456212	75456312	3558629	0	-	0.39	(0.378,0.408]	chr7	331545	136	INTRON	INTRON	POM121C	ENSG00000272391.6	ENST00000615331.5:ENST00000398379.2	protein_coding	protein_coding	protein_coding	protein_coding	10	125	2	1.84341	2.5548	3.26619	0.00456713	3.62021e-4	0.0622215	0.0176126
chr1	29036423	29036520	60186	0	+	0.443299	(0.44,0.476]	chr1	7697	1	INTRON	INTRON	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000647918.1:ENST00000646800.1:ENST00000644342.1:ENST00000646189.1:ENST00000482464.6:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000646260.1:ENST00000373798.5:ENST00000644600.1:ENST00000649674.1:ENST00000643173.1:ENST00000343067.9:ENST00000644780.1:ENST00000650265.1:ENST00000648181.1:ENST00000643604.1:ENST00000648891.1:ENST00000373797.2:ENST00000349460.9:ENST00000645184.1:ENST00000645111.1:ENST00000643302.1:ENST00000645999.1:ENST00000642643.1:ENST00000636666.1:ENST00000644848.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	57	2	2.30673	2.55474	2.80275	0.0146513	0.0055175	0.0982604	0.0672816
chr15	30667490	30667589	5992696	0	+	0.323232	(0.32,0.35]	chr15	569767	83	INTRON	INTRON	ENSG00000284906:ENSG00000285035:ENSG00000187951	ENSG00000284906.3:ENSG00000285035.2:ENSG00000187951.11	ENST00000685924.1:ENST00000563110.6:ENST00000566548.5:ENST00000602616.6:ENST00000562954.1	protein_coding	protein_coding	protein_coding:lncRNA:transcribed_unprocessed_pseudogene	protein_coding:nonsense_mediated_decay:lncRNA:processed_transcript	7	122	2	2.21988	2.554725	2.88957	0.00573083	4.39424e-4	0.0657377	0.0189185
chr20	62305165	62305253	7298831	0	+	0.511364	(0.476,0.515]	chr20	742521	2	INTRON	INTRON	ADRM1	ENSG00000130706.13	ENST00000491935.5:ENST00000620230.4:ENST00000253003.7:ENST00000462554.2:ENST00000465805.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	36	2	2.28264	2.554685	2.82673	0.0534132	0.0134403	0.179876	0.0946278
chr9	72126805	72126904	4141036	0	+	0.494949	(0.476,0.515]	chr9	377405	116	INTRON	INTRON	GDA	ENSG00000119125.17	ENST00000545168.5	protein_coding	protein_coding	protein_coding	protein_coding	2	36	2	2.28264	2.554685	2.82673	0.0534132	0.0134403	0.179876	0.0946278
chr22	19464502	19464601	7554747	0	-	0.343434	(0.32,0.35]	chr22	772371	60	INTRON	INTRON	UFD1	ENSG00000070010.19	ENST00000263202.15:ENST00000399523.5:ENST00000459854.5:ENST00000466373.1:ENST00000447868.5:ENST00000421968.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	74	2	2.54408	2.55464	2.5652	0.00765724	0.00659077	0.075364	0.0737338
chr2	48319097	48319197	777363	0	+	0.39	(0.378,0.408]	chr2	87463	39	INTRON	INTRON	FOXN2	ENSG00000170802.17	ENST00000413569.5:ENST00000340553.8	protein_coding	protein_coding	protein_coding	protein_coding	2	38	2	2.26252	2.554575	2.84663	0.056222	0.0133954	0.18407	0.0946278
chr20	5605725	5605823	7312292	0	-	0.387755	(0.378,0.408]	chr20	744619	9	INTRON	INTRON	GPCPD1	ENSG00000125772.14	ENST00000379019.7:ENST00000481690.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	16	226	2	2.41359	2.554565	2.69554	3.07621e-4	8.95869e-5	0.0161432	0.0079464
chr2	87621079	87621179	827594	0	+	0.5	(0.476,0.515]	chr2	92489	135	INTRON	INTRON	CYTOR:ENSG00000284879	ENSG00000222041.12:ENSG00000284879.1	ENST00000642796.1:ENST00000644478.1:ENST00000644125.1:ENST00000643276.1:ENST00000646855.1:ENST00000646636.1:ENST00000646578.1:ENST00000644938.1	lncRNA	lncRNA	lncRNA	lncRNA	6	71	2	1.61324	2.554555	3.49587	0.026684	0.00120011	0.134419	0.0315806
chr16	2261094	2261192	6431622	0	-	0.377551	(0.35,0.378]	chr16	618787	25	INTRON	INTRON	RNPS1	ENSG00000205937.12	ENST00000397086.6:ENST00000566458.5:ENST00000320225.10:ENST00000566397.5:ENST00000565678.5:ENST00000561718.5:ENST00000568631.5:ENST00000569598.6:ENST00000301730.12:ENST00000567147.5:ENST00000565870.5:ENST00000561518.5:ENST00000564311.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	38	2	2.53856	2.554525	2.57049	0.0326077	0.0262669	0.133687	0.133676
chr2	208693180	208693280	996329	0	+	0.36	(0.35,0.378]	chr2	106920	358	INTRON	INTRON	PTH2R	ENSG00000144407.10	ENST00000419079.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	2	38	2	2.53856	2.554525	2.57049	0.0326077	0.0262669	0.133687	0.133676
chr12	122146948	122147047	5240573	0	+	0.494949	(0.476,0.515]	chr12	497573	53	UTR3	UTR3:EXON_MRNA	MLXIP	ENSG00000175727.14	ENST00000319080.12	protein_coding	protein_coding	protein_coding	protein_coding	4	58	2	2.09697	2.55447	3.01197	0.0136924	0.00633162	0.0949306	0.0722266
chr1	112933427	112933527	523916	0	-	0.29	(0.28,0.32]	chr1	61690	30	INTRON	INTRON	SLC16A1	ENSG00000155380.13	ENST00000679803.1:ENST00000369626.8:ENST00000443580.6:ENST00000538576.5:ENST00000429288.2:ENST00000458229.6:ENST00000679846.1:ENST00000478835.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	60	2	2.0243	2.55446	3.08462	0.0364967	0.0078976	0.153759	0.076155
chr12	62487477	62487575	5151368	0	+	0.285714	(0.28,0.32]	chr12	487464	29	INTRON	INTRON	MON2	ENSG00000061987.16	ENST00000641654.1:ENST00000546600.5:ENST00000393630.8:ENST00000549378.5:ENST00000547095.5:ENST00000552738.5:ENST00000393629.6:ENST00000552115.5:ENST00000549286.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	60	2	2.0243	2.55446	3.08462	0.0364967	0.0078976	0.153759	0.076155
chr3	172774621	172774720	1563467	0	+	0.444444	(0.44,0.476]	chr3	161783	2	INTRON	INTRON	ECT2	ENSG00000114346.14	ENST00000232458.9:ENST00000540509.5:ENST00000392692.8:ENST00000417960.5:ENST00000441497.6:ENST00000444250.1	protein_coding	protein_coding	protein_coding	protein_coding	4	59	2	2.50105	2.5543950000000004	2.60774	0.0255874	0.00240161	0.120269	0.0452061
chr13	83046618	83046718	5633713	0	-	0.48	(0.476,0.515]	chr13	536804	2677	INTRON	INTRON	ENSG00000286385	ENSG00000286385.1	ENST00000663739.1	lncRNA	lncRNA	lncRNA	lncRNA	3	49	2	2.45598	2.55433	2.65268	0.0201975	0.00945755	0.121243	0.0817766
chr5	149743312	149743412	2517182	0	+	0.49	(0.476,0.515]	chr5	240647	28	INTRON	INTRON	PPARGC1B	ENSG00000155846.17	ENST00000360453.8:ENST00000394320.7:ENST00000461780.1:ENST00000309241.10	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	49	2	2.45598	2.55433	2.65268	0.0201975	0.00945755	0.121243	0.0817766
chr7	77554268	77554367	3342183	0	+	0.373737	(0.35,0.378]	chr7	311312	81	INTRON	INTRON	PTPN12	ENSG00000127947.16	ENST00000248594.11:ENST00000460731.5:ENST00000523952.5:ENST00000433369.6:ENST00000415482.6:ENST00000435495.6:ENST00000418110.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	61	2	2.07049	2.554315	3.03814	0.0140397	0.00767003	0.102801	0.075364
chr7	148823959	148824058	3670149	0	-	0.424242	(0.408,0.44]	chr7	340580	32	INTRON	INTRON	EZH2	ENSG00000106462.12	ENST00000683292.1:ENST00000320356.7:ENST00000492143.5:ENST00000478654.5:ENST00000350995.6:ENST00000460911.5:ENST00000683744.1:ENST00000682317.1:ENST00000682263.1:ENST00000684300.1:ENST00000476773.5:ENST00000483967.5:ENST00000498186.5:ENST00000483012.1:ENST00000682401.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	20	253	2	2.13335	2.554275	2.9752	2.38271e-4	5.92948e-5	0.0136386	0.00675009
chr10	21726655	21726755	4406360	0	+	0.32	(0.28,0.32]	chr10	406560	3	SS5_PROX	SS5_PROX:INTRON	MLLT10	ENSG00000078403.17	ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000651298.1:ENST00000377059.7:ENST00000651382.1:ENST00000438473.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	59	2	2.42868	2.554215	2.67975	0.0252505	0.0105331	0.12011	0.0908969
chr22	38492415	38492515	7587943	0	-	0.29	(0.28,0.32]	chr22	776726	3	SS3_PROX	SS3_PROX:INTRON	DDX17	ENSG00000100201.23	ENST00000403230.3:ENST00000396821.8:ENST00000216019.11:ENST00000475004.6:ENST00000432525.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	59	2	2.42868	2.554215	2.67975	0.0252505	0.0105331	0.12011	0.0908969
chr10	110876170	110876269	4521141	0	+	0.494949	(0.476,0.515]	chr10	417120	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PDCD4	ENSG00000150593.18	ENST00000393104.6:ENST00000467574.5:ENST00000483670.5:ENST00000280154.12:ENST00000444997.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	63	2	2.21677	2.55421	2.89165	0.0207026	0.00142068	0.110999	0.034662
chr2	105346749	105346847	843663	0	+	0.326531	(0.32,0.35]	chr2	94490	15	UTR3	UTR3:EXON_MRNA	C2orf49	ENSG00000135974.10	ENST00000258457.7	protein_coding	protein_coding	protein_coding	protein_coding	5	76	2	1.38564	2.5542	3.72276	0.0793006	3.96144e-4	0.199711	0.0178616
chr11	86056170	86056270	5014714	0	-	0.29	(0.28,0.32]	chr11	473022	242	INTRON	INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000630913.2:ENST00000528398.5:ENST00000356360.9:ENST00000534412.5:ENST00000531558.1:ENST00000531930.5:ENST00000532041.5:ENST00000525162.5:ENST00000528256.1:ENST00000528411.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	156	2	2.04207	2.55412	3.06617	0.0121395	7.36818e-5	0.0910127	0.00714826
chr6	35853071	35853171	3088124	0	-	0.51	(0.476,0.515]	chr6	288820	101	INTRON	INTRON	SRPK1	ENSG00000096063.16	ENST00000373825.7:ENST00000423325.6:ENST00000346162.10:ENST00000361690.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	66	2	1.86182	2.55406	3.2463	0.0178986	0.00262374	0.106365	0.0470772
chr19	49687126	49687226	7090538	0	+	0.53	(0.515,0.57]	chr19	710209	4	SS5_PROX	SS5_PROX:INTRON	PRMT1	ENSG00000126457.22	ENST00000532489.5:ENST00000610806.4:ENST00000391851.8:ENST00000454376.7:ENST00000530361.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	117	2	1.86208	2.55405	3.24602	0.0107937	9.65273e-6	0.0869599	0.00224755
chr19	57832058	57832157	7105848	0	+	0.454545	(0.44,0.476]	chr19	713206	11	INTRON	INTRON	ENSG00000268750:ZNF587B	ENSG00000268750.7:ENSG00000269343.9	ENST00000597134.5:ENST00000651253.2:ENST00000596498.2:ENST00000593873.6:ENST00000603271.1:ENST00000594328.1:ENST00000598031.1:ENST00000442832.8:ENST00000594901.2:ENST00000604231.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	115	2	2.38553	2.5540450000000003	2.72256	0.00111786	9.57032e-4	0.0306954	0.0284484
chr16	218651	218751	6426080	0	-	0.46	(0.44,0.476]	chr16	617437	90	INTRON	INTRON	LUC7L	ENSG00000007392.17	ENST00000337351.8:ENST00000426094.5:ENST00000397783.5:ENST00000629543.2:ENST00000490762.5:ENST00000293872.13:ENST00000419516.5:ENST00000397780.5:ENST00000418978.5:ENST00000430864.5:ENST00000443357.5:ENST00000494366.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	115	2	2.36073	2.55403	2.74733	0.00108744	9.96884e-4	0.0301337	0.0288906
chr15	20418612	20418712	6118033	0	-	0.5	(0.476,0.515]	chr15	582352	95	INTRON	INTRON	HERC2P3	ENSG00000180229.12	ENST00000426501.5:ENST00000428453.5:ENST00000437318.5:ENST00000430598.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	6	86	2	1.96437	2.554	3.14363	0.0124351	4.25082e-4	0.0920366	0.018441
chr19	15301544	15301644	7147096	0	-	0.49	(0.476,0.515]	chr19	721965	212	INTRON	INTRON	BRD4	ENSG00000141867.19	ENST00000679869.1:ENST00000360016.9:ENST00000594841.5:ENST00000597315.5:ENST00000601941.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	103	2	2.51682	2.55395	2.59108	0.00196853	9.59562e-4	0.0402283	0.0284801
chr6	83191823	83191914	3145874	0	-	0.494505	(0.476,0.515]	chr6	293332	1	INTRON	INTRON	PGM3	ENSG00000013375.16	ENST00000513973.6:ENST00000512866.5:ENST00000650640.1:ENST00000616566.5:ENST00000283977.9:ENST00000651425.1:ENST00000650642.1:ENST00000506587.5:ENST00000509219.2:ENST00000652468.1:ENST00000510258.1:ENST00000505470.5:ENST00000507554.1:ENST00000508748.5:ENST00000503094.1:ENST00000515333.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	103	2	2.51682	2.55395	2.59108	0.00196853	9.59562e-4	0.0402283	0.0284801
chr13	99546484	99546584	5527337	0	+	0.31	(0.28,0.32]	chr13	528395	1	SS3_PROX	SS3_PROX:INTRON	TM9SF2	ENSG00000125304.10	ENST00000642475.1:ENST00000376387.5	protein_coding	protein_coding	protein_coding	protein_coding	3	63	2	2.2609	2.5538049999999997	2.84671	0.0671429	0.00216662	0.183051	0.0434015
chr6	87223255	87223352	2913942	0	+	0.525773	(0.515,0.57]	chr6	275310	6	EXON_LNCRNA	EXON_LNCRNA:INTRON	ZNF292	ENSG00000188994.13	ENST00000369577.8:ENST00000369578.6:ENST00000518845.1:ENST00000339907.8:ENST00000496806.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	112	2	2.38109	2.5537549999999998	2.72642	7.31116e-4	6.14845e-4	0.0246497	0.0228683
chr5	157841236	157841336	2758476	0	-	0.52	(0.515,0.57]	chr5	260304	233	INTRON	INTRON	CLINT1	ENSG00000113282.14	ENST00000523094.5:ENST00000411809.7:ENST00000530742.5:ENST00000523908.5	protein_coding	protein_coding	protein_coding	protein_coding	5	65	2	2.3252100000000002	2.5536450000000004	2.78208	0.00525266	0.00209264	0.0633615	0.0424943
chr1	223966441	223966540	643537	0	-	0.30303	(0.28,0.32]	chr1	75994	38	INTRON	INTRON	GTF2IP20	ENSG00000272645.4	ENST00000634905.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	2	44	2	2.53522	2.553585	2.57195	0.0331711	0.0310424	0.143457	0.133994
chr10	74202737	74202837	4456285	0	+	0.3	(0.28,0.32]	chr10	411541	15	INTRON	INTRON	ADK	ENSG00000156110.15	ENST00000672429.1:ENST00000539909.6:ENST00000286621.7:ENST00000478611.2:ENST00000673352.1:ENST00000673310.1:ENST00000672920.1:ENST00000672394.1:ENST00000372734.5:ENST00000673027.1:ENST00000541550.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	44	2	2.53522	2.553585	2.57195	0.0331711	0.0310424	0.143457	0.133994
chr3	10101357	10101453	1362985	0	+	0.385417	(0.378,0.408]	chr3	143645	2	UTR3	UTR3:EXON_MRNA	FANCD2	ENSG00000144554.13	ENST00000675286.1:ENST00000419585.5:ENST00000421731.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	77	1131	2	2.47948	2.55357	2.62766	1.59955e-5	1.20365e-6	0.00321152	6.38418e-4
chr8	128017516	128017616	3862309	0	+	0.43	(0.408,0.44]	chr8	355521	4	INTRON	INTRON	PVT1	ENSG00000249859.13	ENST00000667305.1:ENST00000690350.1:ENST00000653522.1:ENST00000661830.1:ENST00000657289.1:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000657211.1:ENST00000653845.1:ENST00000651587.1:ENST00000692980.1:ENST00000654324.1:ENST00000657693.1:ENST00000666080.1:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000662410.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000657356.1:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000667714.1:ENST00000654105.1:ENST00000664995.1:ENST00000670714.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000668123.1:ENST00000666776.1:ENST00000659912.1:ENST00000670532.1:ENST00000523068.2:ENST00000671088.1:ENST00000663461.1:ENST00000513868.6:ENST00000692433.1:ENST00000523190.7:ENST00000685606.1:ENST00000690788.1:ENST00000685634.1:ENST00000653990.1:ENST00000655783.1:ENST00000656411.1:ENST00000664742.1:ENST00000655099.1:ENST00000662709.1:ENST00000512617.7:ENST00000660122.1:ENST00000666452.1:ENST00000659666.1:ENST00000659892.1:ENST00000521600.5:ENST00000522875.5:ENST00000653497.1:ENST00000668098.1:ENST00000659106.1:ENST00000666147.1:ENST00000658350.1:ENST00000656999.1:ENST00000664610.1:ENST00000671092.1:ENST00000653853.1	lncRNA	lncRNA	lncRNA	lncRNA	3	49	2	2.36185	2.553515	2.74518	0.0152229	0.0133164	0.108535	0.094512
chr5	178610239	178610337	2778857	0	-	0.428571	(0.408,0.44]	chr5	262131	14	INTRON	INTRON	CLK4	ENSG00000113240.14	ENST00000520878.5:ENST00000316308.9:ENST00000522136.5:ENST00000521621.5:ENST00000519132.5:ENST00000519583.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	57	2	2.26617	2.55347	2.84077	0.0132196	0.00649402	0.0940535	0.0734343
chr6	166943352	166943440	3264181	0	-	0.420455	(0.408,0.44]	chr6	303025	4	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	ENSG00000249141:RNASET2	ENSG00000249141.1:ENSG00000026297.17	ENST00000507747.1:ENST00000508775.6:ENST00000683770.1:ENST00000611959.2:ENST00000620173.5:ENST00000682774.1:ENST00000684236.1:ENST00000683968.1:ENST00000682498.1:ENST00000366855.10:ENST00000421787.5:ENST00000476238.6:ENST00000028008.9:ENST00000478180.6:ENST00000467705.6:ENST00000499370.6:ENST00000358165.7:ENST00000496851.6:ENST00000684086.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	57	2	2.26617	2.55347	2.84077	0.0132196	0.00649402	0.0940535	0.0734343
chr10	73493205	73493305	4650127	0	-	0.45	(0.44,0.476]	chr10	427923	133	INTRON	INTRON	PPP3CB	ENSG00000107758.16	ENST00000360663.10:ENST00000394828.6:ENST00000394829.6:ENST00000342558.3	protein_coding	protein_coding	protein_coding	protein_coding	3	47	2	1.9039	2.5534	3.2029	0.0501498	0.00308681	0.156383	0.0510391
chr7	101864242	101864342	3366831	0	+	0.47	(0.44,0.476]	chr7	315215	449	INTRON	INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000497815.5:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000607092.1:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000558469.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	47	2	1.9039	2.5534	3.2029	0.0501498	0.00308681	0.156383	0.0510391
chr6	110883509	110883609	2939031	0	+	0.42	(0.408,0.44]	chr6	276765	75	INTRON	INTRON	AMD1	ENSG00000123505.19	ENST00000451850.6:ENST00000675380.1:ENST00000368882.8:ENST00000672937.2:ENST00000368885.8:ENST00000368877.9:ENST00000368876.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	116	2	2.31152	2.5533099999999997	2.7951	0.00139382	8.18693e-4	0.0341355	0.0264086
chr11	68553644	68553744	4818275	0	+	0.35	(0.32,0.35]	chr11	448966	1	SS3_PROX	SS3_PROX:INTRON	PPP6R3	ENSG00000110075.15	ENST00000529907.5:ENST00000534534.5:ENST00000524845.5:ENST00000393800.7:ENST00000265637.8:ENST00000524904.5:ENST00000393801.7:ENST00000265636.9:ENST00000529710.5:ENST00000527403.6	protein_coding	protein_coding	protein_coding	protein_coding	4	66	2	1.69107	2.553305	3.41554	0.0517392	0.00153152	0.159306	0.0361484
chr6	27852431	27852531	2839162	0	+	0.34	(0.32,0.35]	chr6	266461	4	UTR3	UTR3:EXON_MRNA	H2BC15	ENSG00000233822.6	ENST00000606613.1	protein_coding	protein_coding	protein_coding	protein_coding	4	66	2	1.69107	2.553305	3.41554	0.0517392	0.00153152	0.159306	0.0361484
chr7	152386157	152386257	3680795	0	-	0.37	(0.35,0.378]	chr7	341660	271	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000682301.1:ENST00000452749.2:ENST00000680867.1:ENST00000683800.1:ENST00000684278.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	114	2	2.39484	2.553295	2.71175	0.00186176	0.00138349	0.039946	0.0338784
chr8	141422145	141422240	3878685	0	+	0.652632	(0.57,1]	chr8	356216	9	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	PTP4A3	ENSG00000184489.13	ENST00000520105.5:ENST00000521578.6:ENST00000523147.5:ENST00000329397.6:ENST00000349124.3:ENST00000680615.1:ENST00000681443.1:ENST00000524028.1	protein_coding	protein_coding	protein_coding	protein_coding	21	155	2	1.87106	2.55328	3.2355	9.47117e-4	1.34037e-7	0.0282007	1.73812e-4
chr16	71806185	71806285	6514451	0	-	0.46	(0.44,0.476]	chr16	631209	1	SS5_PROX	SS5_PROX:INTRON	AP1G1	ENSG00000166747.13	ENST00000299980.9:ENST00000569748.5:ENST00000393512.7:ENST00000565009.5:ENST00000568327.5:ENST00000450149.6:ENST00000563259.5:ENST00000563104.5:ENST00000569185.5:ENST00000566161.5:ENST00000567583.1:ENST00000565412.5:ENST00000569975.5:ENST00000570297.5:ENST00000570017.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	47	2	2.08277	2.553215	3.02366	0.0309998	0.00603307	0.13151	0.0700813
chr22	21979635	21979733	7561996	0	-	0.571429	(0.57,1]	chr22	773552	31	INTRON	INTRON	TOP3B	ENSG00000100038.20	ENST00000357179.10:ENST00000457179.5:ENST00000444502.5:ENST00000398793.6:ENST00000424393.5:ENST00000437929.5:ENST00000430142.5:ENST00000456075.5:ENST00000449704.5:ENST00000437103.1:ENST00000434517.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	89	2	2.4254	2.5531249999999996	2.68085	1.71932e-4	1.14119e-4	0.012049	0.0091431
chr11	3755801	3755901	4894745	0	-	0.52	(0.515,0.57]	chr11	458876	20	INTRON	INTRON	NUP98	ENSG00000110713.17	ENST00000359171.8:ENST00000324932.12:ENST00000650171.1:ENST00000355260.7:ENST00000397004.8:ENST00000397007.8:ENST00000527104.5:ENST00000529379.1:ENST00000397013.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	49	2	2.27116	2.5530850000000003	2.83501	0.0117686	0.00601759	0.0894475	0.0700813
chr1	40162036	40162136	79969	0	+	0.45	(0.44,0.476]	chr1	10404	4	SS5_PROX	SS5_PROX:INTRON	RLF	ENSG00000117000.9	ENST00000372771.5	protein_coding	protein_coding	protein_coding	protein_coding	3	47	2	2.49823	2.552985	2.60774	0.0255874	0.00718224	0.120269	0.0756118
chr5	138519466	138519566	2732431	0	-	0.47	(0.44,0.476]	chr5	257409	2	INTRON	INTRON	ETF1	ENSG00000120705.13	ENST00000360541.10:ENST00000499810.6:ENST00000503014.5:ENST00000512198.1:ENST00000572514.5:ENST00000507939.5:ENST00000514005.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	47	2	2.49823	2.552985	2.60774	0.0255874	0.00718224	0.120269	0.0756118
chr10	118691064	118691164	4703770	0	-	0.43	(0.408,0.44]	chr10	433852	4	SS5_PROX	SS5_PROX:INTRON	CACUL1	ENSG00000151893.15	ENST00000544392.5:ENST00000369151.8:ENST00000493518.5:ENST00000489169.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	35	2	2.36073	2.552955	2.74518	0.0481658	0.0152229	0.153019	0.108535
chr11	107849625	107849724	5033718	0	-	0.424242	(0.408,0.44]	chr11	474346	85	INTRON	INTRON	SLC35F2	ENSG00000110660.15	ENST00000525071.5:ENST00000525815.6:ENST00000533664.1:ENST00000375682.8:ENST00000532513.2:ENST00000524991.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	35	2	2.36073	2.552955	2.74518	0.0481658	0.0152229	0.153019	0.108535
chr16	18018938	18019038	6452822	0	-	0.43	(0.408,0.44]	chr16	621960	151	INTRON	INTRON	ENSG00000259929:ENSG00000260242	ENSG00000259929.5:ENSG00000260242.1	ENST00000567304.1:ENST00000563866.1	lncRNA	lncRNA	lncRNA	lncRNA	2	35	2	2.36073	2.552955	2.74518	0.0481658	0.0152229	0.153019	0.108535
chr7	64697959	64698056	3320205	0	+	0.412371	(0.408,0.44]	chr7	308692	7	EXON_LNCRNA	EXON_LNCRNA:INTRON	ZNF107	ENSG00000196247.13	ENST00000395391.2:ENST00000684016.1:ENST00000620827.6:ENST00000423627.6:ENST00000613690.5:ENST00000344930.7:ENST00000682671.1:ENST00000683971.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	35	2	2.36073	2.552955	2.74518	0.0481658	0.0152229	0.153019	0.108535
chr9	77914460	77914560	4270774	0	-	0.43	(0.408,0.44]	chr9	392874	983	INTRON	INTRON	GNAQ	ENSG00000156052.11	ENST00000286548.9:ENST00000411677.1	protein_coding	protein_coding	protein_coding	protein_coding	2	35	2	2.36073	2.552955	2.74518	0.0481658	0.0152229	0.153019	0.108535
chr18	73254297	73254396	6988518	0	-	0.282828	(0.28,0.32]	chr18	691712	13	INTRON	INTRON	LINC02864	ENSG00000263711.6	ENST00000584544.5:ENST00000581011.5:ENST00000581862.6:ENST00000669547.1:ENST00000661525.1:ENST00000583405.5:ENST00000582571.2:ENST00000667943.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	11	199	2	2.3722	2.55294	2.73368	7.86049e-4	5.8906e-4	0.0258544	0.0220627
chrX	73972769	73972869	7682386	0	+	0.3	(0.28,0.32]	chrX	786638	44	INTRON	INTRON	JPX	ENSG00000225470.8	ENST00000664637.1:ENST00000639185.1:ENST00000655090.1:ENST00000640437.1:ENST00000660546.1:ENST00000667886.1:ENST00000660840.1:ENST00000657179.1:ENST00000670506.1:ENST00000657910.1:ENST00000662120.1:ENST00000671207.1:ENST00000659254.1:ENST00000656624.1:ENST00000667573.1:ENST00000660856.1:ENST00000660836.1:ENST00000668590.1:ENST00000658649.1:ENST00000414209.6:ENST00000654137.1:ENST00000670994.1:ENST00000602772.5:ENST00000655879.1:ENST00000657372.1:ENST00000657096.1:ENST00000602985.6:ENST00000670685.1:ENST00000670503.1:ENST00000663027.1:ENST00000654995.1:ENST00000602895.6:ENST00000654374.1:ENST00000660087.1:ENST00000665032.1:ENST00000671336.1:ENST00000671476.1:ENST00000667057.1:ENST00000670192.1:ENST00000670464.1:ENST00000665345.1:ENST00000661546.1:ENST00000662543.1:ENST00000602938.6:ENST00000664295.1:ENST00000654005.1:ENST00000669149.1:ENST00000659852.1:ENST00000656509.1:ENST00000602294.6:ENST00000667294.1:ENST00000663470.1:ENST00000602920.6:ENST00000671021.1:ENST00000659849.1:ENST00000667937.1:ENST00000661130.1:ENST00000654196.1:ENST00000655994.1:ENST00000659373.1:ENST00000662239.1:ENST00000670805.1:ENST00000656263.1:ENST00000653069.1:ENST00000657638.1:ENST00000653808.1:ENST00000653929.1:ENST00000653885.1:ENST00000659023.1:ENST00000602546.5:ENST00000659622.1:ENST00000671518.1:ENST00000670408.1	lncRNA	lncRNA	lncRNA	lncRNA	4	80	2	2.47203	2.55291	2.63379	0.0114089	0.00503861	0.0886611	0.0646039
chr1	155723006	155723104	229857	0	+	0.357143	(0.35,0.378]	chr1	27020	10	INTRON	INTRON	DAP3	ENSG00000132676.16	ENST00000471642.6:ENST00000471214.5:ENST00000343043.7:ENST00000368336.10:ENST00000535183.5:ENST00000421487.6:ENST00000496863.5:ENST00000462002.5:ENST00000470830.5:ENST00000497826.5:ENST00000463575.5:ENST00000471523.1:ENST00000479151.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	61	2	2.11531	2.5528750000000002	2.99044	0.0119629	0.00894806	0.0962115	0.0799922
chr10	38104498	38104597	4427554	0	+	0.434343	(0.408,0.44]	chr10	408039	75	INTRON	INTRON	ZNF37A	ENSG00000075407.19	ENST00000638053.1:ENST00000351773.7:ENST00000685332.1:ENST00000361085.9:ENST00000479469.5:ENST00000477790.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	35	2	2.43988	2.552835	2.66579	0.0398236	0.019342	0.143072	0.119831
chr10	74412176	74412276	4458385	0	+	0.41	(0.408,0.44]	chr10	411580	132	INTRON	INTRON	ADK	ENSG00000156110.15	ENST00000672429.1:ENST00000539909.6:ENST00000286621.7:ENST00000673352.1:ENST00000673310.1:ENST00000672920.1:ENST00000672394.1:ENST00000372734.5:ENST00000673027.1:ENST00000541550.6:ENST00000672604.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	35	2	2.43988	2.552835	2.66579	0.0398236	0.019342	0.143072	0.119831
chr15	90760782	90760876	6101355	0	+	0.414894	(0.408,0.44]	chr15	580888	3	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	BLM	ENSG00000197299.13	ENST00000355112.8:ENST00000648453.1:ENST00000681142.1:ENST00000560509.5:ENST00000559724.5:ENST00000680772.1:ENST00000558599.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	35	2	2.43988	2.552835	2.66579	0.0398236	0.019342	0.143072	0.119831
chr2	39104542	39104642	1102173	0	-	0.41	(0.408,0.44]	chr2	118304	62	INTRON	INTRON	SOS1	ENSG00000115904.15	ENST00000692089.1:ENST00000402219.8:ENST00000690876.1:ENST00000395038.6:ENST00000691229.1:ENST00000689668.1:ENST00000690679.1:ENST00000461545.2:ENST00000451331.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	35	2	2.43988	2.552835	2.66579	0.0398236	0.019342	0.143072	0.119831
chr2	62364641	62364741	790976	0	+	0.44	(0.408,0.44]	chr2	88716	26	INTRON	INTRON	ENSG00000228541	ENSG00000228541.2	ENST00000689590.1:ENST00000687402.1	lncRNA	lncRNA	lncRNA	lncRNA	2	35	2	2.43988	2.552835	2.66579	0.0398236	0.019342	0.143072	0.119831
chr6	15028257	15028356	3063215	0	-	0.434343	(0.408,0.44]	chr6	284657	64	INTRON	INTRON	ENSG00000234261	ENSG00000234261.5	ENST00000653525.1:ENST00000656468.1:ENST00000656344.1:ENST00000437648.1	lncRNA	lncRNA	lncRNA	lncRNA	2	35	2	2.43988	2.552835	2.66579	0.0398236	0.019342	0.143072	0.119831
chr7	2168226	2168326	3466284	0	-	0.42	(0.408,0.44]	chr7	324054	186	INTRON	INTRON	MAD1L1	ENSG00000002822.16	ENST00000406869.5:ENST00000399654.6:ENST00000402746.5:ENST00000265854.12:ENST00000464742.5:ENST00000491858.5:ENST00000459731.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	35	2	2.43988	2.552835	2.66579	0.0398236	0.019342	0.143072	0.119831
chr11	3369502	3369602	4893756	0	-	0.34	(0.32,0.35]	chr11	458681	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	ZNF195	ENSG00000005801.18	ENST00000528796.5:ENST00000399602.9:ENST00000354599.10:ENST00000343338.11:ENST00000620374.4:ENST00000649622.1:ENST00000429541.6:ENST00000005082.13:ENST00000526601.5:ENST00000438262.6:ENST00000528410.5:ENST00000528218.5:ENST00000529789.5:ENST00000525313.6:ENST00000533036.5:ENST00000529228.5:ENST00000529678.5:ENST00000427810.6:ENST00000534569.5:ENST00000524857.5:ENST00000530643.5:ENST00000618467.4:ENST00000330692.11:ENST00000525502.5:ENST00000526501.5:ENST00000532539.1:ENST00000529085.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	66	2	1.64769	2.552705	3.45772	0.0578603	0.00128487	0.167723	0.0333518
chr17	30141414	30141514	6587636	0	+	0.34	(0.32,0.35]	chr17	640563	133	INTRON	INTRON	NSRP1	ENSG00000126653.18	ENST00000540900.7:ENST00000612959.4:ENST00000247026.10:ENST00000577289.6:ENST00000584154.5:ENST00000394826.8:ENST00000475652.5:ENST00000584317.5:ENST00000583301.5:ENST00000585881.5:ENST00000467446.6:ENST00000580103.6:ENST00000581048.5:ENST00000588614.1:ENST00000589608.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	66	2	1.64769	2.552705	3.45772	0.0578603	0.00128487	0.167723	0.0333518
chr16	47558513	47558613	6344282	0	+	0.42	(0.408,0.44]	chr16	608890	105	INTRON	INTRON	PHKB	ENSG00000102893.17	ENST00000566044.5:ENST00000299167.12:ENST00000696809.1:ENST00000323584.10:ENST00000567402.5:ENST00000570047.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	102	2	1.62843	2.55267	3.47691	0.025242	1.1563e-4	0.133676	0.00969484
chr10	68524662	68524761	4640256	0	-	0.454545	(0.44,0.476]	chr10	426805	66	INTRON	INTRON	SLC25A16	ENSG00000122912.15	ENST00000609923.6:ENST00000493963.5:ENST00000491102.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	65	2	1.64563	2.5526	3.45957	0.0363922	0.00106385	0.138959	0.0300133
chr12	53176335	53176433	5327529	0	-	0.469388	(0.44,0.476]	chr12	508232	22	INTRON	INTRON	CSAD	ENSG00000139631.20	ENST00000444623.6:ENST00000267085.8:ENST00000379850.7:ENST00000379846.5:ENST00000453446.6:ENST00000437073.5:ENST00000424990.5	protein_coding	protein_coding	protein_coding	protein_coding	3	47	2	2.0776	2.552555	3.02751	0.0292951	0.00715968	0.141862	0.0723634
chr12	91460639	91460739	5383822	0	-	0.45	(0.44,0.476]	chr12	513479	609	INTRON	INTRON	ENSG00000289605	ENSG00000289605.1	ENST00000685093.1	lncRNA	lncRNA	lncRNA	lncRNA	3	47	2	2.0776	2.552555	3.02751	0.0292951	0.00715968	0.141862	0.0723634
chr6	20416427	20416527	2827593	0	+	0.34	(0.32,0.35]	chr6	265575	122	INTRON	INTRON	E2F3	ENSG00000112242.16	ENST00000346618.8:ENST00000535432.2	protein_coding	protein_coding	protein_coding	protein_coding	8	142	2	2.45752	2.552515	2.64751	0.00149527	9.50582e-4	0.0356978	0.0282103
chr15	34388152	34388252	6132760	0	-	0.49	(0.476,0.515]	chr15	584234	2	SS3_PROX	SS3_PROX:INTRON	GOLGA8A	ENSG00000175265.18	ENST00000359187.5:ENST00000473125.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	71	2	1.77073	2.5524449999999996	3.33416	0.0151174	0.00230489	0.108513	0.0428247
chr2	175153754	175153854	1272197	0	-	0.51	(0.476,0.515]	chr2	134482	22	INTRON	INTRON	ATF2	ENSG00000115966.18	ENST00000345739.9:ENST00000426833.7:ENST00000264110.7:ENST00000409635.5:ENST00000428760.5:ENST00000392544.5:ENST00000417080.5:ENST00000456655.5:ENST00000421438.5:ENST00000429579.5:ENST00000415955.5:ENST00000409499.5:ENST00000435231.6:ENST00000437522.5:ENST00000409833.5:ENST00000413123.5:ENST00000445349.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	85	2	1.72827	2.552295	3.37632	0.00969651	0.00195267	0.0874888	0.0400465
chr11	3721515	3721610	4894397	0	-	0.463158	(0.44,0.476]	chr11	458840	3	INTRON	INTRON	NUP98	ENSG00000110713.17	ENST00000359171.8:ENST00000324932.12:ENST00000650171.1:ENST00000355260.7:ENST00000397004.8:ENST00000397007.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	56	2	2.12992	2.552215	2.97451	0.010975	0.00853825	0.092635	0.0780043
chr5	138172522	138172619	2731372	0	-	0.443299	(0.44,0.476]	chr5	257180	4	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	BRD8	ENSG00000112983.18	ENST00000254900.10:ENST00000402931.5:ENST00000230901.9:ENST00000454473.5:ENST00000418329.5:ENST00000441656.5:ENST00000411594.6:ENST00000512140.5:ENST00000428808.5:ENST00000432618.5:ENST00000425764.5:ENST00000450756.5:ENST00000515254.1:ENST00000430331.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	56	2	2.12992	2.552215	2.97451	0.010975	0.00853825	0.092635	0.0780043
chrX	13340499	13340599	7622360	0	+	0.45	(0.44,0.476]	chrX	780348	4	SS5_PROX	SS5_PROX:INTRON	LINC01203	ENSG00000226985.7	ENST00000669963.1:ENST00000661545.1:ENST00000659526.1:ENST00000656410.1:ENST00000661104.1:ENST00000456091.2:ENST00000655502.1:ENST00000671651.1:ENST00000656979.1:ENST00000656271.1:ENST00000661629.1:ENST00000661464.1:ENST00000419566.5:ENST00000668192.1:ENST00000665887.1:ENST00000659191.1:ENST00000667868.1:ENST00000653729.1:ENST00000656111.1	lncRNA	lncRNA	lncRNA	lncRNA	4	56	2	2.12992	2.552215	2.97451	0.010975	0.00853825	0.092635	0.0780043
chr1	10500499	10500599	23232	0	+	0.38	(0.378,0.408]	chr1	2503	48	INTRON	INTRON	PEX14	ENSG00000142655.13	ENST00000472851.1:ENST00000356607.9:ENST00000491661.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	49	2	1.8252	2.552135	3.27907	0.0619563	0.0023379	0.174514	0.0442989
chr11	74232801	74232901	4827145	0	+	0.36	(0.35,0.378]	chr11	450488	14	INTRON	INTRON	PPME1	ENSG00000214517.10	ENST00000328257.13:ENST00000398427.6:ENST00000543525.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	62	2	1.83633	2.552135	3.26794	0.0335602	0.00257067	0.134145	0.0466761
chr2	44441887	44441986	766139	0	+	0.373737	(0.35,0.378]	chr2	86775	409	INTRON	INTRON	CAMKMT	ENSG00000143919.15	ENST00000378494.8:ENST00000402247.5:ENST00000407131.5:ENST00000403853.7:ENST00000428993.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	62	2	1.83633	2.552135	3.26794	0.0335602	0.00257067	0.134145	0.0466761
chr8	65620077	65620176	3959571	0	-	0.383838	(0.378,0.408]	chr8	363270	63	INTRON	INTRON	ARMC1	ENSG00000104442.10	ENST00000276569.8:ENST00000458464.3:ENST00000528721.5:ENST00000518908.5:ENST00000523384.1:ENST00000519352.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	49	2	1.8252	2.552135	3.27907	0.0619563	0.0023379	0.174514	0.0442989
chr4	25800988	25801087	2119999	0	-	0.575758	(0.57,1]	chr4	209416	101	INTRON	INTRON	SEL1L3	ENSG00000091490.11	ENST00000264868.9:ENST00000399878.8:ENST00000502949.5	protein_coding	protein_coding	protein_coding	protein_coding	4	31	2	2.32017	2.55213	2.78409	0.0116033	0.00488159	0.0889104	0.0640618
chr12	132995547	132995647	5252186	0	+	0.34	(0.32,0.35]	chr12	499627	74	INTRON	INTRON	ZNF26	ENSG00000198393.8	ENST00000537956.1:ENST00000328654.10:ENST00000545101.1:ENST00000540238.5:ENST00000544181.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	55	2	2.1362	2.55183	2.96746	0.0291083	0.00815799	0.128029	0.0810802
chr15	56956775	56956875	6032493	0	+	0.23	[0,0.28]	chr15	574663	353	INTRON	INTRON	TCF12	ENSG00000140262.18	ENST00000438423.6:ENST00000267811.9:ENST00000333725.10:ENST00000560190.5:ENST00000559609.5:ENST00000558908.5:ENST00000557843.5:ENST00000557947.5:ENST00000561152.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	127	2	1.99083	2.551825	3.11282	0.0167575	8.44203e-4	0.103184	0.0263813
chr9	128991120	128991218	4208315	0	+	0.418367	(0.408,0.44]	chr9	385371	5	INTRON	INTRON	NUP188	ENSG00000095319.14	ENST00000372577.2:ENST00000477069.5:ENST00000491502.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	87	2	1.94531	2.55165	3.15799	0.0136489	3.8998e-4	0.0949306	0.0177751
chr20	63884018	63884118	7300877	0	+	0.4	(0.378,0.408]	chr20	743114	8	INTRON	INTRON	TPD52L2	ENSG00000101150.18	ENST00000611972.4:ENST00000615907.4:ENST00000369927.8:ENST00000346249.9:ENST00000348257.9:ENST00000352482.8:ENST00000351424.8:ENST00000217121.9:ENST00000358548.4	protein_coding	protein_coding	protein_coding	protein_coding	9	137	2	2.50675	2.5515749999999997	2.5964	0.00144847	3.17768e-4	0.034341000000000003	0.0159645
chr1	202005974	202006060	292756	0	+	0.453488	(0.44,0.476]	chr1	33752	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	RNPEP	ENSG00000176393.11	ENST00000295640.9:ENST00000367286.7:ENST00000471105.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	76	2	2.32184	2.551565	2.78129	0.00609071	0.00229634	0.0676501	0.0439319
chr10	73010768	73010868	4646972	0	-	0.51	(0.476,0.515]	chr10	427477	4	SS5_PROX	SS5_PROX:INTRON	P4HA1	ENSG00000122884.13	ENST00000394890.7:ENST00000307116.6:ENST00000373008.6:ENST00000440381.5:ENST00000263556.3:ENST00000464310.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	17	242	2	2.33609	2.551555	2.76702	3.70796e-4	2.18389e-5	0.0178698	0.00364027
chr1	16345767	16345867	382553	0	-	0.53	(0.515,0.57]	chr1	44888	300	INTRON	INTRON	FBXO42	ENSG00000037637.11	ENST00000375592.8	protein_coding	protein_coding	protein_coding	protein_coding	8	101	2	2.35275	2.5514900000000003	2.75023	0.00219906	2.30309e-4	0.0417893	0.0133889
chr19	55013025	55013125	7100288	0	+	0.29	(0.28,0.32]	chr19	712212	56	INTRON	INTRON	GP6-AS1	ENSG00000267265.6	ENST00000593060.5:ENST00000586845.1	lncRNA	lncRNA	lncRNA	lncRNA	11	200	2	2.20536	2.551435	2.89751	0.00137274	3.70807e-4	0.0340241	0.0178698
chr12	102156175	102156275	5205227	0	+	0.44	(0.408,0.44]	chr12	492839	10	INTRON	INTRON	PARPBP	ENSG00000185480.12	ENST00000327680.7:ENST00000541394.5:ENST00000543784.5:ENST00000392911.6:ENST00000457614.6:ENST00000417507.6:ENST00000412715.3:ENST00000535811.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	74	2	1.64167	2.551355	3.46104	0.0266976	0.00105552	0.123349	0.0299229
chr2	238432712	238432812	1052621	0	+	0.4	(0.378,0.408]	chr2	111975	52	INTRON	INTRON	ASB1	ENSG00000065802.12	ENST00000463352.5:ENST00000469885.1:ENST00000264607.9:ENST00000409297.1:ENST00000438264.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	69	2	2.256	2.5513149999999998	2.84663	0.0133954	0.00336115	0.0946278	0.0532154
chr17	4551379	4551479	6712521	0	-	0.58	(0.57,1]	chr17	657817	1	SS5_PROX	SS5_PROX:INTRON	MYBBP1A	ENSG00000132382.15	ENST00000381556.6:ENST00000573116.5:ENST00000254718.9	protein_coding	protein_coding	protein_coding	protein_coding	3	26	2	1.91937	2.551185	3.183	0.0468438	0.00254356	0.167716	0.0448135
chr10	28566922	28567022	4414143	0	+	0.35	(0.32,0.35]	chr10	407148	285	INTRON	INTRON	WAC	ENSG00000095787.24	ENST00000680735.1:ENST00000375664.8:ENST00000428935.6:ENST00000651598.1:ENST00000628285.3:ENST00000681112.1:ENST00000679570.1:ENST00000375646.5:ENST00000354911.9:ENST00000347934.8:ENST00000420266.6:ENST00000651885.1:ENST00000651441.1:ENST00000679398.1:ENST00000424454.5:ENST00000442148.6:ENST00000448193.5:ENST00000414108.6:ENST00000679428.1:ENST00000439676.5:ENST00000345541.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	107	2	1.7162	2.55116	3.38612	0.00891437	0.00249604	0.0849778	0.0446195
chr2	161360290	161360390	901631	0	+	0.49	(0.476,0.515]	chr2	99704	411	INTRON	INTRON	PSMD14	ENSG00000115233.12	ENST00000409682.8:ENST00000437630.1	protein_coding	protein_coding	protein_coding	protein_coding	5	75	2	2.09697	2.55102	3.00507	0.0136924	8.38796e-4	0.0949306	0.0263691
chr1	21054	21153	352180	0	-	0.545455	(0.515,0.57]	chr1	40757	23	INTRON	INTRON	WASH7P	ENSG00000227232.5	ENST00000488147.1	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	4	54	2	2.51561	2.5509250000000003	2.58624	0.00635044	0.00526399	0.0723103	0.0633874
chr3	39384515	39384601	1401625	0	+	0.476744	(0.476,0.515]	chr3	147140	2	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	SLC25A38	ENSG00000144659.13	ENST00000650617.1:ENST00000431510.1:ENST00000645630.1:ENST00000648579.1:ENST00000642683.1:ENST00000645280.1:ENST00000643672.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	51	2	2.47949	2.5509250000000003	2.62236	0.0326974	0.00517	0.145164	0.0631506
chr7	152159564	152159663	3678464	0	-	0.323232	(0.32,0.35]	chr7	341420	6	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	KMT2C	ENSG00000055609.21	ENST00000360104.8:ENST00000262189.11:ENST00000418061.2:ENST00000680877.1:ENST00000424877.6:ENST00000679560.1:ENST00000683120.1:ENST00000681923.1:ENST00000679393.1:ENST00000683200.1:ENST00000680029.1:ENST00000683178.1:ENST00000683502.1:ENST00000684261.1:ENST00000682283.1:ENST00000473186.5:ENST00000684649.1:ENST00000679882.1:ENST00000683886.1:ENST00000683397.1:ENST00000684307.1:ENST00000683625.1:ENST00000684398.1:ENST00000683670.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	221	2	2.40561	2.5509	2.69619	0.00105841	7.74113e-5	0.0297709	0.00735438
chr17	59627045	59627145	6641634	0	+	0.49	(0.476,0.515]	chr17	648527	65	INTRON	INTRON	CLTC	ENSG00000141367.12	ENST00000621829.4:ENST00000393043.5:ENST00000269122.8:ENST00000580081.1:ENST00000579456.5:ENST00000584313.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	86	2	2.4029	2.55088	2.69886	0.00385209	0.0016811	0.0542786	0.0381232
chr3	177177801	177177901	1872252	0	-	0.37	(0.35,0.378]	chr3	187438	65	INTRON	INTRON	TBL1XR1	ENSG00000177565.18	ENST00000457928.7:ENST00000430069.5:ENST00000673974.1:ENST00000352800.10:ENST00000422442.6:ENST00000428970.5:ENST00000424913.5:ENST00000437738.5:ENST00000431421.5:ENST00000635794.1:ENST00000630796.2:ENST00000450267.5:ENST00000630833.2:ENST00000431674.5:ENST00000422066.5:ENST00000443315.5:ENST00000627825.2:ENST00000427349.5:ENST00000413084.5:ENST00000637137.1:ENST00000491623.2:ENST00000637544.1:ENST00000636187.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	105	2	1.97729	2.55082	3.12435	0.00688871	7.66038e-4	0.0750118	0.025385
chr12	110288546	110288645	5226171	0	+	0.484848	(0.476,0.515]	chr12	495234	54	INTRON	INTRON	ATP2A2	ENSG00000174437.18	ENST00000552636.2:ENST00000308664.10:ENST00000539276.7:ENST00000377685.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	95	2	2.1318	2.5508	2.9698	0.00333541	0.00124841	0.0528877	0.0323336
chr1	230118428	230118528	334591	0	+	0.52	(0.515,0.57]	chr1	38930	265	INTRON	INTRON	GALNT2	ENSG00000143641.10	ENST00000494106.1:ENST00000366672.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	43	2	2.53845	2.550755	2.56306	0.0247751	0.00632226	0.131869	0.0687526
chr18	36145690	36145768	6891590	0	+	0.358974	(0.35,0.378]	chr18	683014	3	SS3_PROX	SS3_PROX:INTRON	ELP2	ENSG00000134759.14	ENST00000351393.10:ENST00000442325.6:ENST00000358232.11:ENST00000423854.6:ENST00000539560.5:ENST00000350494.10:ENST00000542824.5:ENST00000540799.1:ENST00000535093.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	114	2	2.0239	2.550655	3.07741	0.0110441	1.44425e-4	0.0873897	0.010445
chr20	50582391	50582491	7286643	0	+	0.44	(0.408,0.44]	chr20	741287	3	SS3_PROX	SS3_PROX:INTRON	PTPN1	ENSG00000196396.10	ENST00000541713.5:ENST00000371621.5	protein_coding	protein_coding	protein_coding	protein_coding	5	79	2	2.03431	2.5506450000000003	3.06698	0.0154896	8.51999e-4	0.108998	0.0267428
chr11	78130345	78130444	4998248	0	-	0.414141	(0.408,0.44]	chr11	472379	7	INTRON	INTRON	ALG8	ENSG00000159063.14	ENST00000679559.1:ENST00000680398.1:ENST00000681221.1:ENST00000527099.2:ENST00000681489.1:ENST00000525783.6:ENST00000529139.6:ENST00000680761.1:ENST00000525870.6:ENST00000680866.1:ENST00000680223.1:ENST00000526737.6:ENST00000681575.1:ENST00000299626.10:ENST00000680467.1:ENST00000679497.1:ENST00000681351.1:ENST00000679697.1:ENST00000680580.1:ENST00000526849.6:ENST00000680256.1:ENST00000680797.1:ENST00000681723.1:ENST00000680142.1:ENST00000679685.1:ENST00000681384.1:ENST00000679874.1:ENST00000679444.1:ENST00000680459.1:ENST00000681699.1:ENST00000679986.1:ENST00000680063.1:ENST00000530608.6:ENST00000681765.1:ENST00000681225.1:ENST00000681417.1:ENST00000530910.6:ENST00000680329.1:ENST00000376156.7:ENST00000679648.1:ENST00000680101.1:ENST00000680829.1:ENST00000525761.3:ENST00000532440.6:ENST00000680996.1:ENST00000532306.6:ENST00000680399.1:ENST00000679539.1:ENST00000615266.5:ENST00000681957.1:ENST00000532552.2:ENST00000680643.1:ENST00000530454.6:ENST00000525755.6:ENST00000532050.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	63	2	2.36185	2.55063	2.73941	0.0133164	0.002744	0.094512	0.0484022
chr11	9313529	9313626	4909427	0	-	0.381443	(0.378,0.408]	chr11	460164	20	INTRON	INTRON	TMEM41B	ENSG00000166471.11	ENST00000524543.5:ENST00000528080.6:ENST00000299596.8:ENST00000611268.4:ENST00000527813.5:ENST00000533723.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	58	2	2.04622	2.55062	3.05502	0.0149927	0.00689519	0.107704	0.0717484
chr5	69113139	69113227	2379777	0	+	0.386364	(0.378,0.408]	chr5	229083	1	CDS	CDS:EXON_MRNA	SLC30A5	ENSG00000145740.20	ENST00000396591.8:ENST00000507354.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	58	2	2.04622	2.55062	3.05502	0.0149927	0.00689519	0.107704	0.0717484
chr5	78207255	78207355	2650264	0	-	0.4	(0.378,0.408]	chr5	251746	252	INTRON	INTRON	AP3B1	ENSG00000132842.15	ENST00000519295.6:ENST00000255194.11:ENST00000695515.1:ENST00000695454.1:ENST00000695511.1:ENST00000695453.1:ENST00000695455.1:ENST00000695513.1:ENST00000695488.1:ENST00000695450.1:ENST00000695507.1:ENST00000695512.1:ENST00000695510.1:ENST00000695451.1:ENST00000695447.1:ENST00000695505.1:ENST00000519888.6:ENST00000695514.1:ENST00000517940.2:ENST00000517561.2:ENST00000695452.1:ENST00000695449.1:ENST00000695540.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	68	2	1.94681	2.55048	3.15415	0.0457723	4.11608e-4	0.149888	0.0181365
chr3	49996343	49996443	1423523	0	+	0.35	(0.32,0.35]	chr3	149988	143	INTRON	INTRON	RBM6	ENSG00000004534.15	ENST00000442092.5:ENST00000443081.5:ENST00000419610.5:ENST00000441115.5:ENST00000422955.5:ENST00000454079.5:ENST00000266022.9:ENST00000425608.5:ENST00000434592.5:ENST00000464013.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	65	2	2.06478	2.550375	3.03597	0.0147778	0.00832487	0.106702	0.0774402
chr1	212863027	212863125	309884	0	+	0.285714	(0.28,0.32]	chr1	35783	35	INTRON	INTRON	FLVCR1	ENSG00000162769.13	ENST00000366971.9:ENST00000419102.1	protein_coding	protein_coding	protein_coding	protein_coding	4	71	2	2.18212	2.550315	2.91851	0.0130672	0.010265700000000001	0.093385	0.089002
chr11	134255853	134255950	4886832	0	+	0.402062	(0.378,0.408]	chr11	457083	18	INTRON	INTRON	ACAD8	ENSG00000151498.12	ENST00000526026.5:ENST00000524426.5:ENST00000534433.5:ENST00000374752.6:ENST00000525961.1:ENST00000281182.9:ENST00000530533.5:ENST00000533387.5:ENST00000534240.5:ENST00000527082.5:ENST00000524547.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	36	2	2.38873	2.55028	2.71183	0.0458857	0.0170789	0.149888	0.110899
chr17	2639491	2639588	6547900	0	+	0.391753	(0.378,0.408]	chr17	635237	3	EXON_MRNA	EXON_MRNA:INTRON	PAFAH1B1:ENSG00000279432	ENSG00000007168.14:ENSG00000279432.1	ENST00000576586.5:ENST00000397195.10:ENST00000676201.1:ENST00000575477.5:ENST00000675621.1:ENST00000676353.1:ENST00000674717.1:ENST00000675202.1:ENST00000675764.1:ENST00000674608.1:ENST00000676077.1:ENST00000676098.1:ENST00000572915.6:ENST00000570400.1:ENST00000675430.1:ENST00000675331.1:ENST00000676188.1:ENST00000574816.5:ENST00000675390.1:ENST00000676456.1:ENST00000622996.1	protein_coding	protein_coding	protein_coding:TEC	protein_coding:retained_intron:nonsense_mediated_decay:TEC:processed_transcript	2	36	2	2.38873	2.55028	2.71183	0.0458857	0.0170789	0.149888	0.110899
chr17	35613082	35613182	6599799	0	+	0.4	(0.378,0.408]	chr17	642258	43	INTRON	INTRON	AP2B1	ENSG00000006125.18	ENST00000616784.4:ENST00000621914.4:ENST00000620039.4:ENST00000616681.4:ENST00000621668.4:ENST00000610402.5:ENST00000612035.4:ENST00000614600.4:ENST00000612116.5:ENST00000618940.4:ENST00000591561.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	36	2	2.38873	2.55028	2.71183	0.0458857	0.0170789	0.149888	0.110899
chr2	11336899	11336999	1068600	0	-	0.4	(0.378,0.408]	chr2	114093	488	INTRON	INTRON	ROCK2	ENSG00000134318.15	ENST00000315872.11:ENST00000261535.7:ENST00000462366.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	36	2	2.38873	2.55028	2.71183	0.0458857	0.0170789	0.149888	0.110899
chr9	78317175	78317275	4148123	0	+	0.4	(0.378,0.408]	chr9	378285	1	SS3_PROX	SS3_PROX:INTRON	PSAT1	ENSG00000135069.14	ENST00000376588.4:ENST00000347159.6	protein_coding	protein_coding	protein_coding	protein_coding	2	36	2	2.38873	2.55028	2.71183	0.0458857	0.0170789	0.149888	0.110899
chr10	91954567	91954664	4489040	0	+	0.515464	(0.515,0.57]	chr10	413318	3	INTRON	INTRON	BTAF1	ENSG00000095564.15	ENST00000265990.12	protein_coding	protein_coding	protein_coding	protein_coding	5	55	2	1.79385	2.55025	3.30665	0.0201222	0.00213226	0.121243	0.041756
chr7	128324994	128325094	3635064	0	-	0.29	(0.28,0.32]	chr7	337864	3	SS3_PROX	SS3_PROX:INTRON	RBM28	ENSG00000106344.8	ENST00000223073.6:ENST00000415472.6:ENST00000487602.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	185	2	2.11286	2.550195	2.98753	0.00161352	5.61873e-4	0.0369204	0.0219303
chr12	122523472	122523567	5442227	0	-	0.515789	(0.515,0.57]	chr12	520597	7	EXON_MRNA	EXON_MRNA:INTRON	RSRC2	ENSG00000111011.18	ENST00000331738.12:ENST00000532695.5:ENST00000433877.6:ENST00000527173.6:ENST00000525335.6:ENST00000344591.8:ENST00000527399.3:ENST00000527796.6:ENST00000526560.6:ENST00000527461.5:ENST00000525387.5:ENST00000528279.1:ENST00000525570.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	137	2	2.49552	2.550185	2.60485	3.26431e-4	2.42252e-4	0.0166589	0.0137115
chr2	151473363	151473463	893875	0	+	0.54	(0.515,0.57]	chr2	99048	31	INTRON	INTRON	RIF1	ENSG00000080345.18	ENST00000453091.6:ENST00000428287.6:ENST00000444746.7:ENST00000243326.9:ENST00000430328.6:ENST00000454583.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	82	2	1.82788	2.5501449999999997	3.27241	0.0123396	1.80226e-4	0.0914341	0.0116696
chr1	51734587	51734687	100574	0	+	0.31	(0.28,0.32]	chr1	13276	41	INTRON	INTRON	OSBPL9	ENSG00000117859.19	ENST00000371714.5:ENST00000428468.6:ENST00000447887.5:ENST00000495776.5:ENST00000435274.6:ENST00000453295.5:ENST00000489990.5:ENST00000484890.5:ENST00000532975.5:ENST00000534040.5:ENST00000527631.5:ENST00000531828.5:ENST00000361556.9:ENST00000473207.6:ENST00000533884.5:ENST00000481937.5:ENST00000526917.5:ENST00000462759.5:ENST00000486942.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	71	2	1.90249	2.550115	3.19774	0.0261803	0.00548491	0.133676	0.0648867
chr22	19477574	19477672	7554883	0	-	0.316327	(0.28,0.32]	chr22	772398	16	INTRON	INTRON	UFD1	ENSG00000070010.19	ENST00000263202.15:ENST00000399523.5:ENST00000459854.5:ENST00000447868.5:ENST00000421968.6:ENST00000484101.5:ENST00000489406.1:ENST00000494054.1:ENST00000474226.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	81	2	2.4721	2.550075	2.62805	0.00906617	0.00681001	0.0854289	0.0711884
chr19	46383010	46383110	7081680	0	+	0.37	(0.35,0.378]	chr19	708541	16	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	PPP5C	ENSG00000011485.15	ENST00000012443.9:ENST00000478046.5:ENST00000391919.1:ENST00000527193.1:ENST00000487483.6:ENST00000532058.1:ENST00000486994.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	190	2	2.30968	2.55007	2.79046	6.21878e-4	2.12609e-4	0.0223951	0.0132903
chr9	5805697	5805785	4230951	0	-	0.420455	(0.408,0.44]	chr9	388931	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	ERMP1	ENSG00000099219.15	ENST00000688202.1:ENST00000689364.1:ENST00000690284.1:ENST00000689268.1:ENST00000487088.6:ENST00000689030.1:ENST00000688887.1:ENST00000693487.1:ENST00000462592.5:ENST00000689671.1:ENST00000686418.1:ENST00000692974.1:ENST00000691560.1:ENST00000684950.1:ENST00000214893.10:ENST00000685462.1:ENST00000339450.10:ENST00000690648.1:ENST00000689742.1:ENST00000688899.1:ENST00000691251.1:ENST00000689259.1:ENST00000690037.1:ENST00000693638.1:ENST00000489219.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	49	2	2.36073	2.55007	2.73941	0.0481658	0.002744	0.153019	0.0484022
chr8	58600608	58600696	3955318	0	-	0.261364	[0,0.28]	chr8	362848	2	INTRON	INTRON	NSMAF	ENSG00000035681.9	ENST00000038176.8:ENST00000649465.1:ENST00000427130.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	115	2	2.5043	2.55	2.5957	0.00656974	0.00511937	0.0736092	0.0628102
chr14	102638909	102639009	5822996	0	+	0.46	(0.44,0.476]	chr14	552490	452	INTRON	INTRON	RCOR1	ENSG00000089902.10	ENST00000262241.7	protein_coding	protein_coding	protein_coding	protein_coding	2	35	2	2.20949	2.54998	2.89047	0.0672585	0.00955699	0.183051	0.0863913
chr15	41355838	41355938	6005008	0	+	0.47	(0.44,0.476]	chr15	571320	4	SS3_PROX	SS3_PROX:INTRON	NUSAP1	ENSG00000137804.14	ENST00000668273.1:ENST00000260359.10:ENST00000558123.5:ENST00000414849.6:ENST00000450592.6:ENST00000559596.6:ENST00000560747.5:ENST00000560177.5:ENST00000557840.5:ENST00000560898.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	35	2	2.20949	2.54998	2.89047	0.0672585	0.00955699	0.183051	0.0863913
chr3	150757647	150757746	1841944	0	-	0.444444	(0.44,0.476]	chr3	185277	146	INTRON	INTRON	SIAH2	ENSG00000181788.4	ENST00000312960.4:ENST00000482706.1	protein_coding	protein_coding	protein_coding	protein_coding	2	35	2	2.20949	2.54998	2.89047	0.0672585	0.00955699	0.183051	0.0863913
chr5	98866040	98866137	2683399	0	-	0.329897	(0.32,0.35]	chr5	253792	21	INTRON	INTRON	CHD1	ENSG00000153922.11	ENST00000614616.5:ENST00000284049.7:ENST00000514344.5:ENST00000512844.5:ENST00000505657.1:ENST00000511067.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	54	2	2.25173	2.549925	2.84812	0.0180122	0.0147575	0.114436	0.0983813
chr7	50786978	50787078	3532624	0	-	0.34	(0.32,0.35]	chr7	329547	42	INTRON	INTRON	GRB10	ENSG00000106070.20	ENST00000335866.7:ENST00000644769.1:ENST00000644879.1:ENST00000402497.6:ENST00000645075.2:ENST00000439044.7:ENST00000644716.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	54	2	2.25173	2.549925	2.84812	0.0180122	0.0147575	0.114436	0.0983813
chr6	87184447	87184547	2913547	0	+	0.36	(0.35,0.378]	chr6	275281	142	INTRON	INTRON	ZNF292	ENSG00000188994.13	ENST00000369577.8:ENST00000369578.6:ENST00000518845.1:ENST00000339907.8:ENST00000496806.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	115	2	2.29482	2.54992	2.80502	0.00743782	2.28494e-4	0.0746192	0.0133228
chr2	84983442	84983542	820386	0	+	0.38	(0.378,0.408]	chr2	91419	108	INTRON	INTRON	KCMF1	ENSG00000176407.18	ENST00000456682.1:ENST00000409785.9:ENST00000428691.5:ENST00000453448.1	protein_coding	protein_coding	protein_coding	protein_coding	4	58	2	1.99678	2.54976	3.10274	0.0177959	0.00586642	0.113452	0.0668095
chr1	16342574	16342674	382521	0	-	0.32	(0.28,0.32]	chr1	44888	268	INTRON	INTRON	FBXO42	ENSG00000037637.11	ENST00000375592.8	protein_coding	protein_coding	protein_coding	protein_coding	5	96	2	2.53648	2.549695	2.56291	0.00925866	0.00227849	0.0817766	0.0437013
chr7	156682180	156682280	3685880	0	-	0.3	(0.28,0.32]	chr7	341973	45	UTR3	UTR3:EXON_MRNA	LMBR1	ENSG00000105983.23	ENST00000353442.10:ENST00000448926.5:ENST00000415428.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	96	2	2.38504	2.549595	2.71415	0.005045	0.00475871	0.0636201	0.0621586
chr12	123399803	123399902	5242738	0	+	0.474747	(0.44,0.476]	chr12	498205	30	INTRON	INTRON	KMT5A	ENSG00000183955.14	ENST00000402868.8:ENST00000437519.5:ENST00000461103.5:ENST00000437502.1:ENST00000485469.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	113	2	2.06568	2.5495900000000002	3.0335	0.00202294	9.65686e-4	0.0416117	0.0282401
chr19	14418828	14418928	7144545	0	-	0.59	(0.57,1]	chr19	721388	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	DDX39A	ENSG00000123136.15	ENST00000242776.9:ENST00000589318.5:ENST00000324340.13:ENST00000588542.5:ENST00000454233.6:ENST00000589675.5:ENST00000590260.5:ENST00000586558.5:ENST00000590239.5:ENST00000586993.5:ENST00000592632.5:ENST00000593008.1:ENST00000591275.5:ENST00000590696.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	28	2	2.36411	2.54955	2.73499	0.0408868	0.00237434	0.161534	0.0438057
chr16	11910506	11910606	6446357	0	-	0.35	(0.32,0.35]	chr16	621130	65	INTRON	INTRON	GSPT1	ENSG00000103342.13	ENST00000434724.7:ENST00000439887.6:ENST00000420576.6:ENST00000568849.5:ENST00000562169.1	protein_coding	protein_coding	protein_coding	protein_coding	6	106	2	2.36223	2.5495099999999997	2.73679	0.00625472	9.3145e-4	0.0684171	0.0278746
chr5	65932701	65932801	2370905	0	+	0.28	[0,0.28]	chr5	228472	55	INTRON	INTRON	ERBIN	ENSG00000112851.15	ENST00000380943.6:ENST00000507490.1:ENST00000416865.6:ENST00000380935.5:ENST00000284037.10:ENST00000380938.6:ENST00000511297.5:ENST00000506030.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	113	2	2.27384	2.549495	2.82515	0.0233847	8.72498e-4	0.11839	0.0268436
chr7	5527651	5527747	3472954	0	-	0.385417	(0.378,0.408]	chr7	324751	14	UTR3	UTR3:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ACTB	ENSG00000075624.17	ENST00000674681.1:ENST00000676319.1:ENST00000676189.1:ENST00000473257.3:ENST00000676397.1:ENST00000642480.2:ENST00000646664.1:ENST00000464611.1:ENST00000675515.1:ENST00000477812.2:ENST00000425660.5:ENST00000462494.5:ENST00000493945.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	49	658	2	1.86932	2.5494700000000003	3.22962	3.45421e-4	5.60295e-7	0.016534	4.41244e-4
chr16	23894852	23894952	6324349	0	+	0.32	(0.28,0.32]	chr16	605701	11	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000498739.1	protein_coding	protein_coding	protein_coding	protein_coding	7	122	2	2.12972	2.54931	2.9689	0.00413957	0.00194987	0.0588921	0.0400465
chr4	70913042	70913142	1970612	0	+	0.4	(0.378,0.408]	chr4	197571	101	INTRON	INTRON	MOB1B	ENSG00000173542.9	ENST00000502869.5:ENST00000509041.5:ENST00000309395.7:ENST00000396051.2:ENST00000511449.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	13	171	2	2.22703	2.5492850000000002	2.87154	6.11179e-4	3.63301e-4	0.0227393	0.0170509
chr7	22618620	22618720	3499557	0	-	0.3	(0.28,0.32]	chr7	326644	455	INTRON	INTRON	STEAP1B	ENSG00000105889.16	ENST00000439708.1:ENST00000442252.1:ENST00000650428.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	72	2	1.83303	2.54927	3.26551	0.0370023	0.0030714	0.139194	0.0509893
chr2	85627959	85628058	822135	0	+	0.292929	(0.28,0.32]	chr2	91667	19	INTRON	INTRON	USP39	ENSG00000168883.20	ENST00000459775.5:ENST00000450066.6:ENST00000613444.4:ENST00000409025.5:ENST00000409470.5:ENST00000323701.11:ENST00000409766.7:ENST00000493829.5:ENST00000467885.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	59	2	2.13651	2.54919	2.96187	0.0265696	0.0114995	0.134088	0.0889104
chr16	89647578	89647678	6543678	0	-	0.68	(0.57,1]	chr16	634306	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS3_PROX:INTRON	CHMP1A	ENSG00000131165.16	ENST00000675909.1:ENST00000397901.8:ENST00000676355.1:ENST00000675161.1:ENST00000676402.1:ENST00000675016.1:ENST00000551981.6:ENST00000675309.1:ENST00000547687.2:ENST00000675952.1:ENST00000676342.1:ENST00000535997.7:ENST00000674799.1:ENST00000675536.1:ENST00000549328.2:ENST00000675778.1:ENST00000676118.1:ENST00000675076.1:ENST00000549139.5:ENST00000550102.5:ENST00000548650.1:ENST00000547614.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	47	2	2.44356	2.54913	2.6547	0.00346848	0.00109465	0.0539802	0.0304174
chr12	132824818	132824918	5450182	0	-	0.59	(0.57,1]	chr12	522113	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	GOLGA3:CHFR	ENSG00000090615.16:ENSG00000072609.18	ENST00000204726.9:ENST00000450791.8:ENST00000688114.1:ENST00000691696.1:ENST00000691636.1:ENST00000690897.1:ENST00000456883.7:ENST00000545875.4:ENST00000688251.1:ENST00000686751.1:ENST00000685580.1:ENST00000687165.1:ENST00000692384.1:ENST00000685120.1:ENST00000689813.1:ENST00000693112.1:ENST00000685450.1:ENST00000534967.2:ENST00000537317.2:ENST00000690178.1:ENST00000652603.2:ENST00000541341.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	67	2	2.54416	2.548975	2.55379	0.0015786	1.36951e-4	0.0362091	0.0100796
chr1	23779941	23780041	44795	0	+	0.38	(0.378,0.408]	chr1	5452	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	PITHD1	ENSG00000057757.10	ENST00000246151.9:ENST00000415372.1	protein_coding	protein_coding	protein_coding	protein_coding	3	49	2	2.04292	2.5489699999999997	3.05502	0.0326035	0.00689519	0.145164	0.0717484
chr12	11033488	11033587	5268124	0	-	0.393939	(0.378,0.408]	chr12	502233	22	INTRON	INTRON	ENSG00000275778:PRH1	ENSG00000275778.2:ENSG00000231887.8	ENST00000536668.2:ENST00000535024.6:ENST00000539853.5:ENST00000541977.5:ENST00000536086.2:ENST00000534923.1:ENST00000541456.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	49	2	2.04292	2.5489699999999997	3.05502	0.0326035	0.00689519	0.145164	0.0717484
chr16	8028523	8028623	6440794	0	-	0.39	(0.378,0.408]	chr16	620351	209	INTRON	INTRON	ENSG00000260289	ENSG00000260289.2	ENST00000670665.1:ENST00000654046.1:ENST00000567103.2	lncRNA	lncRNA	lncRNA	lncRNA	3	49	2	2.04292	2.5489699999999997	3.05502	0.0326035	0.00689519	0.145164	0.0717484
chr1	31906517	31906614	414104	0	-	0.278351	[0,0.28]	chr1	49867	2	UTR3	UTR3:EXON_MRNA:INTRON	ENSG00000269967:PTP4A2	ENSG00000269967.1:ENSG00000184007.22	ENST00000602889.1:ENST00000647444.2:ENST00000602725.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	9	196	2	2.38278	2.548905	2.71503	0.00282055	6.30678e-4	0.0472361	0.0226622
chr11	96266492	96266592	5023601	0	-	0.52	(0.515,0.57]	chr11	473809	1726	INTRON	INTRON	MAML2	ENSG00000184384.14	ENST00000524717.6	protein_coding	protein_coding	protein_coding	protein_coding	4	49	2	1.56681	2.54883	3.53085	0.064862	6.59951e-4	0.179394	0.0232396
chr1	212761390	212761490	634476	0	-	0.43	(0.408,0.44]	chr1	74949	214	INTRON	INTRON	NSL1	ENSG00000117697.15	ENST00000366977.8:ENST00000366978.5:ENST00000366976.3:ENST00000626725.1	protein_coding	protein_coding	protein_coding	protein_coding	7	104	2	2.47605	2.5487599999999997	2.62147	0.00180223	0.00116417	0.0382461	0.0314524
chr6	35632827	35632926	3086956	0	-	0.393939	(0.378,0.408]	chr6	288775	122	INTRON	INTRON	FKBP5	ENSG00000096060.15	ENST00000536438.5:ENST00000539068.5:ENST00000357266.9:ENST00000542713.1	protein_coding	protein_coding	protein_coding	protein_coding	4	65	2	2.35103	2.5487450000000003	2.74646	0.014158	0.00271684	0.0959618	0.0481064
chr20	49641065	49641165	7352893	0	-	0.44	(0.408,0.44]	chr20	749821	4	SS3_PROX	SS3_PROX:INTRON	B4GALT5	ENSG00000158470.5	ENST00000371711.4	protein_coding	protein_coding	protein_coding	protein_coding	2	35	2	2.27698	2.5487	2.82042	0.0583528	0.0120121	0.167723	0.0962115
chr5	53903042	53903142	2616833	0	-	0.45	(0.44,0.476]	chr5	248833	153	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	75	2	2.38763	2.548615	2.7096	0.00394089	0.00376205	0.0573041	0.0539118
chr9	91354087	91354187	4281146	0	-	0.52	(0.515,0.57]	chr9	393807	105	INTRON	INTRON	AUH	ENSG00000148090.12	ENST00000303617.5:ENST00000375731.9:ENST00000478465.5:ENST00000475023.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	89	2	2.40178	2.5486	2.69542	0.00382306	3.15632e-4	0.0542786	0.0159645
chr2	151447468	151447566	893600	0	+	0.255102	[0,0.28]	chr2	98976	5	INTRON	INTRON	RIF1	ENSG00000080345.18	ENST00000453091.6:ENST00000428287.6:ENST00000444746.7:ENST00000243326.9:ENST00000414861.6:ENST00000430328.6	protein_coding	protein_coding	protein_coding	protein_coding	4	91	2	2.33825	2.54856	2.75887	0.0195228	0.00360252	0.109483	0.0552588
chr1	21683018	21683117	395829	0	-	0.50505	(0.476,0.515]	chr1	47200	18	INTRON	INTRON	USP48	ENSG00000090686.16	ENST00000400301.5:ENST00000308271.14:ENST00000374732.7:ENST00000529637.5	protein_coding	protein_coding	protein_coding	protein_coding	3	48	2	2.365	2.548525	2.73205	0.0159328	0.0128901	0.109464	0.0926667
chr7	139366999	139367099	3437659	0	+	0.58	(0.57,1]	chr7	320318	63	INTRON	INTRON	LUC7L2:FMC1-LUC7L2	ENSG00000146963.18:ENSG00000269955.2	ENST00000541170.7:ENST00000541515.3:ENST00000608368.5:ENST00000619796.4:ENST00000354926.9:ENST00000435096.1:ENST00000456182.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	17	114	2	2.05825	2.548515	3.03878	3.42122e-4	8.84405e-6	0.0164987	0.0022851
chr1	51774291	51774388	100994	0	+	0.195876	[0,0.28]	chr1	13363	12	INTRON	INTRON	OSBPL9	ENSG00000117859.19	ENST00000371714.5:ENST00000428468.6:ENST00000447887.5:ENST00000495776.5:ENST00000435274.6:ENST00000453295.5:ENST00000489990.5:ENST00000531828.5:ENST00000361556.9:ENST00000462759.5:ENST00000486942.5:ENST00000528603.5:ENST00000475697.5:ENST00000531061.1:ENST00000531819.5:ENST00000533825.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	110	2	2.37401	2.5485100000000003	2.72301	0.00593154	0.00568456	0.0678837	0.0674604
chr2	55685448	55685548	1125685	0	-	0.46	(0.44,0.476]	chr2	120827	4	SS3_PROX	SS3_PROX:INTRON	PNPT1	ENSG00000138035.15	ENST00000447944.7:ENST00000415374.5:ENST00000260604.8:ENST00000429805.1:ENST00000625249.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	36	2	2.29425	2.5484999999999998	2.80275	0.0518406	0.0146513	0.176696	0.0982604
chr8	31063003	31063101	3728227	0	+	0.418367	(0.408,0.44]	chr8	346535	34	INTRON	INTRON	WRN	ENSG00000165392.11	ENST00000650667.1:ENST00000298139.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	120	2	2.53189	2.548445	2.565	0.00103673	8.78846e-4	0.0292734	0.0269932
chr12	123408188	123408285	5242825	0	+	0.453608	(0.44,0.476]	chr12	498222	6	UTR3	UTR3:EXON_MRNA	KMT5A	ENSG00000183955.14	ENST00000402868.8:ENST00000437519.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	147	2	2.52598	2.548425	2.57087	5.18452e-4	4.52247e-4	0.0209322	0.0192381
chr3	197884560	197884659	1598683	0	+	0.535354	(0.515,0.57]	chr3	165690	10	UTR3	UTR3:EXON_MRNA	LRCH3	ENSG00000186001.14	ENST00000438796.6:ENST00000425562.7	protein_coding	protein_coding	protein_coding	protein_coding	3	41	2	1.94945	2.548375	3.1473	0.0414068	0.00397184	0.161557	0.0549214
chr6	42063725	42063815	2864805	0	+	0.533333	(0.515,0.57]	chr6	270972	7	EXON_LNCRNA	EXON_LNCRNA:INTRON	TAF8	ENSG00000137413.17	ENST00000686935.1:ENST00000372982.8:ENST00000456846.6:ENST00000494547.5:ENST00000372977.8:ENST00000688562.1:ENST00000686229.1:ENST00000691805.1:ENST00000687601.1:ENST00000688007.1:ENST00000689833.1:ENST00000482926.1:ENST00000687266.1:ENST00000465926.5:ENST00000684962.1:ENST00000685500.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	41	2	1.94945	2.548375	3.1473	0.0414068	0.00397184	0.161557	0.0549214
chr3	194481304	194481403	1891144	0	-	0.323232	(0.32,0.35]	chr3	189246	132	INTRON	INTRON	ATP13A3	ENSG00000133657.17	ENST00000687055.1:ENST00000645538.1:ENST00000645319.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	88	2	2.37199	2.5483599999999997	2.72473	0.00465833	0.00433316	0.0629753	0.0579683
chr12	32684472	32684572	5109796	0	+	0.43	(0.408,0.44]	chr12	482431	41	INTRON	INTRON	DNM1L	ENSG00000087470.19	ENST00000414834.6:ENST00000452533.6:ENST00000358214.9:ENST00000553257.6:ENST00000549701.6:ENST00000548671.5:ENST00000266481.10:ENST00000551076.5:ENST00000550011.5:ENST00000546649.5:ENST00000547312.5:ENST00000413295.6:ENST00000434676.6:ENST00000547932.5:ENST00000550154.5:ENST00000551476.5:ENST00000551643.5:ENST00000381000.8:ENST00000548750.5:ENST00000549926.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	35	2	2.51492	2.548355	2.58179	0.0329839	0.024638	0.133816	0.131869
chr5	139195940	139196040	2735437	0	-	0.43	(0.408,0.44]	chr5	257605	1	SS5_PROX	SS5_PROX:INTRON	SIL1	ENSG00000120725.13	ENST00000394817.7:ENST00000265195.9:ENST00000509534.5:ENST00000508639.5:ENST00000507002.5:ENST00000505830.5:ENST00000504666.5:ENST00000509400.5:ENST00000440765.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	35	2	2.51492	2.548355	2.58179	0.0329839	0.024638	0.133816	0.131869
chr7	141605345	141605444	3439574	0	+	0.434343	(0.408,0.44]	chr7	320587	37	INTRON	INTRON	AGK	ENSG00000006530.18	ENST00000629555.2:ENST00000473247.5:ENST00000649365.1:ENST00000649014.1:ENST00000650365.1:ENST00000648489.1:ENST00000649286.2:ENST00000648690.1:ENST00000649790.1:ENST00000473884.5:ENST00000649914.1:ENST00000647568.1:ENST00000648395.1:ENST00000648068.1:ENST00000650547.1:ENST00000650006.1:ENST00000649538.1:ENST00000494688.1:ENST00000465241.5:ENST00000647898.1:ENST00000496273.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	35	2	2.51492	2.548355	2.58179	0.0329839	0.024638	0.133816	0.131869
chr1	112651704	112651803	186651	0	+	0.292929	(0.28,0.32]	chr1	20651	18	INTRON	INTRON	CAPZA1	ENSG00000116489.13	ENST00000476936.5:ENST00000263168.4:ENST00000498626.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	212	2	2.18631	2.548335	2.91036	0.00111927	3.49042e-4	0.030733	0.017404
chr11	14470652	14470750	4918023	0	-	0.408163	(0.378,0.408]	chr11	460895	7	INTRON	INTRON	COPB1	ENSG00000129083.13	ENST00000249923.7:ENST00000439561.7	protein_coding	protein_coding	protein_coding	protein_coding	2	36	2	2.30961	2.54833	2.78705	0.055088	0.0135539	0.165463	0.101363
chr4	177344524	177344624	2083590	0	+	0.39	(0.378,0.408]	chr4	205931	25	INTRON	INTRON	NEIL3	ENSG00000109674.4	ENST00000264596.4:ENST00000513321.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	36	2	2.30961	2.54833	2.78705	0.055088	0.0135539	0.165463	0.101363
chr7	75427949	75428048	3558342	0	-	0.383838	(0.378,0.408]	chr7	331515	11	INTRON	INTRON	POM121C	ENSG00000272391.6	ENST00000615331.5:ENST00000607367.5:ENST00000473168.1:ENST00000439629.2:ENST00000479864.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	36	2	2.30961	2.54833	2.78705	0.055088	0.0135539	0.165463	0.101363
chr16	84728777	84728877	6410191	0	+	0.45	(0.44,0.476]	chr16	615272	119	INTRON	INTRON	USP10	ENSG00000103194.16	ENST00000562743.5:ENST00000540269.6:ENST00000563892.5:ENST00000562092.1:ENST00000569511.5:ENST00000219473.12:ENST00000570191.5:ENST00000563048.5:ENST00000562283.5:ENST00000563386.5:ENST00000569038.5:ENST00000570053.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	89	2	1.34727	2.54826	3.74925	0.0344229	4.08974e-4	0.147767	0.0185763
chr14	81220606	81220694	5935899	0	-	0.465909	(0.44,0.476]	chr14	564170	2	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	GTF2A1	ENSG00000165417.12	ENST00000553612.6:ENST00000298173.7:ENST00000434192.2:ENST00000556268.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	47	2	2.13779	2.5481949999999998	2.9586	0.0264596	0.00758318	0.122506	0.0773151
chr1	246203026	246203126	677665	0	-	0.49	(0.476,0.515]	chr1	79733	94	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000453676.5:ENST00000462422.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	47	2	1.79693	2.5481599999999998	3.29939	0.0649782	0.00211868	0.179417	0.0425644
chr1	224189947	224190040	321741	0	+	0.397849	(0.378,0.408]	chr1	37037	5	CDS	CDS:EXON_MRNA:EXON_LNCRNA	DEGS1	ENSG00000143753.13	ENST00000415210.5:ENST00000323699.9:ENST00000391877.3:ENST00000465848.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	36	2	2.46373	2.5481	2.63247	0.0382831	0.0215745	0.141795	0.123836
chr1	246053469	246053569	676166	0	-	0.39	(0.378,0.408]	chr1	79716	4	SS3_PROX	SS3_PROX:INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000391836.3:ENST00000464398.1:ENST00000453676.5:ENST00000462422.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	36	2	2.46373	2.5481	2.63247	0.0382831	0.0215745	0.141795	0.123836
chr15	30690491	30690591	5992928	0	+	0.38	(0.378,0.408]	chr15	569773	50	INTRON	INTRON	ENSG00000284906:ENSG00000285035:ENSG00000187951	ENSG00000284906.3:ENSG00000285035.2:ENSG00000187951.11	ENST00000685924.1:ENST00000566548.5:ENST00000602616.6:ENST00000562954.1	protein_coding	protein_coding	protein_coding:lncRNA:transcribed_unprocessed_pseudogene	protein_coding:lncRNA:processed_transcript	2	36	2	2.46373	2.5481	2.63247	0.0382831	0.0215745	0.141795	0.123836
chr6	18186996	18187094	2827061	0	+	0.387755	(0.378,0.408]	chr6	265485	8	INTRON	INTRON	KDM1B	ENSG00000165097.16	ENST00000546309.6:ENST00000650836.2:ENST00000449850.2:ENST00000297792.9	protein_coding	protein_coding	protein_coding	protein_coding	2	36	2	2.46373	2.5481	2.63247	0.0382831	0.0215745	0.141795	0.123836
chr8	55971590	55971690	3755266	0	+	0.38	(0.378,0.408]	chr8	349311	14	INTRON	INTRON	LYN	ENSG00000254087.8	ENST00000519728.6:ENST00000520220.6:ENST00000420292.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	36	2	2.46373	2.5481	2.63247	0.0382831	0.0215745	0.141795	0.123836
chr16	18161158	18161258	6454246	0	-	0.49	(0.476,0.515]	chr16	621964	97	INTRON	INTRON	ENSG00000260242	ENSG00000260242.1	ENST00000563866.1	lncRNA	lncRNA	lncRNA	lncRNA	16	233	2	2.51332	2.5480650000000002	2.58281	1.85131e-4	1.03132e-4	0.0118667	0.00915599
chr3	49766100	49766199	1694679	0	-	0.494949	(0.476,0.515]	chr3	173818	173	INTRON	INTRON	IP6K1	ENSG00000176095.12	ENST00000321599.9:ENST00000395238.5:ENST00000613416.4:ENST00000468463.5:ENST00000460540.1:ENST00000498149.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	47	2	1.99341	2.548025	3.10264	0.037389	0.00543163	0.155878	0.0645052
chr16	16601980	16602080	6311882	0	+	0.54	(0.515,0.57]	chr16	604098	1020	INTRON	INTRON	ENSG00000260126	ENSG00000260126.2	ENST00000567465.2	lncRNA	lncRNA	lncRNA	lncRNA	4	59	2	2.03361	2.548	3.06239	0.0325854	6.62949e-4	0.145164	0.0234815
chr6	132795103	132795202	3222794	0	-	0.30303	(0.28,0.32]	chr6	299650	39	INTRON	INTRON	SLC18B1	ENSG00000146409.12	ENST00000275227.9:ENST00000647932.1:ENST00000650278.1:ENST00000650136.1:ENST00000650298.1:ENST00000367918.1:ENST00000460518.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	82	2	2.09198	2.547965	3.00395	0.0101329	0.00780964	0.0850389	0.0788246
chr9	4996904	4997004	4095939	0	+	0.38	(0.378,0.408]	chr9	373235	105	INTRON	INTRON	JAK2	ENSG00000096968.14	ENST00000636127.1:ENST00000476574.5:ENST00000381652.4	protein_coding	protein_coding	protein_coding	protein_coding	8	124	2	2.1782	2.5479149999999997	2.91763	0.00587071	1.09828e-4	0.0668474	0.0088711
chr6	156998223	156998323	3009375	0	+	0.6	(0.57,1]	chr6	281130	127	INTRON	INTRON	ARID1B	ENSG00000049618.24	ENST00000346085.10:ENST00000636930.2:ENST00000647938.1:ENST00000350026.10:ENST00000674298.1:ENST00000674190.1:ENST00000414678.7:ENST00000319584.11:ENST00000452544.2:ENST00000637887.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	40	2	2.1643	2.5479000000000003	2.9315	0.00941704	9.1984e-4	0.0861183	0.0278396
chr19	36079056	36079155	7056856	0	+	0.454545	(0.44,0.476]	chr19	704420	27	INTRON	INTRON	WDR62	ENSG00000075702.19	ENST00000680489.1:ENST00000401500.7:ENST00000680564.1:ENST00000680590.1:ENST00000679682.1:ENST00000679714.1:ENST00000680403.1:ENST00000680359.1:ENST00000644764.2:ENST00000679757.1:ENST00000680806.1:ENST00000679858.1:ENST00000681625.1:ENST00000587391.6:ENST00000270301.12	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	56	2	2.1762	2.5478500000000004	2.9195	0.0102021	0.0092251	0.0855292	0.0850389
chr3	196075058	196075158	1897486	0	-	0.33	(0.32,0.35]	chr3	189980	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	TFRC	ENSG00000072274.13	ENST00000420415.5:ENST00000360110.9:ENST00000392396.7:ENST00000421258.1:ENST00000464011.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	105	2	1.50185	2.5477849999999997	3.59372	0.0589483	4.81573e-5	0.167915	0.00566695
chr11	28070817	28070916	4938064	0	-	0.434343	(0.408,0.44]	chr11	462472	10	INTRON	INTRON	KIF18A	ENSG00000121621.7	ENST00000263181.7	protein_coding	protein_coding	protein_coding	protein_coding	8	116	2	2.52768	2.54772	2.56776	0.00227507	4.47322e-4	0.0426265	0.0191768
chr21	14508512	14508612	7427821	0	-	0.4	(0.378,0.408]	chr21	757738	74	INTRON	INTRON	SAMSN1	ENSG00000155307.19	ENST00000647101.1:ENST00000644288.1:ENST00000400564.5:ENST00000400566.6:ENST00000285670.7:ENST00000619120.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	133	2	1.30019	2.547705	3.79522	0.0402833	1.07161e-5	0.144285	0.00239957
chr7	152421034	152421134	3681144	0	-	0.34	(0.32,0.35]	chr7	341660	620	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000682301.1:ENST00000452749.2:ENST00000680867.1:ENST00000683800.1:ENST00000684278.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	66	2	1.55682	2.5476799999999997	3.53854	0.0724487	9.09596e-4	0.188101	0.0277043
chr11	63629805	63629905	4962398	0	-	0.35	(0.32,0.35]	chr11	467124	4	SS3_PROX	SS3_PROX:INTRON	ATL3	ENSG00000184743.13	ENST00000398868.8:ENST00000538786.1	protein_coding	protein_coding	protein_coding	protein_coding	6	101	2	2.4323	2.54766	2.66302	0.00542632	0.00168279	0.0645052	0.0381547
chr15	50604128	50604219	6172436	0	-	0.285714	(0.28,0.32]	chr15	588283	3	UTR3	UTR3:EXON_MRNA:INTRON	TRPM7	ENSG00000092439.16	ENST00000646667.1:ENST00000560955.5:ENST00000560638.1	protein_coding	protein_coding	protein_coding	protein_coding	5	96	2	2.50462	2.547575	2.5905300000000002	0.0102735	0.0020216	0.0850389	0.0416117
chr16	85577841	85577941	6415610	0	+	0.58	(0.57,1]	chr16	615470	211	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	9	66	2	2.27963	2.54756	2.81549	7.30023e-4	3.90081e-4	0.0248722	0.0177751
chr22	19894563	19894658	7555836	0	-	0.484211	(0.476,0.515]	chr22	772498	8	UTR3	UTR3:EXON_MRNA:INTRON	TXNRD2	ENSG00000184470.21	ENST00000400518.5:ENST00000542719.6:ENST00000494454.5:ENST00000474308.5:ENST00000400525.6:ENST00000400521.7:ENST00000400519.6:ENST00000634537.1:ENST00000635155.1:ENST00000491939.6:ENST00000334363.14	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:non_stop_decay:nonsense_mediated_decay:processed_transcript	11	154	2	2.15941	2.547525	2.93564	0.00126395	1.45166e-4	0.0329641	0.0110154
chr11	18611276	18611376	4933607	0	-	0.35	(0.32,0.35]	chr11	462094	4	SS5_PROX	SS5_PROX:INTRON	SPTY2D1	ENSG00000179119.15	ENST00000336349.6	protein_coding	protein_coding	protein_coding	protein_coding	3	54	2	2.4053	2.547255	2.68921	0.0230336	0.0108284	0.118056	0.0920575
chr19	29962049	29962148	7047752	0	+	0.444444	(0.44,0.476]	chr19	702663	36	INTRON	INTRON	URI1	ENSG00000105176.18	ENST00000360605.8:ENST00000570564.5:ENST00000574233.5:ENST00000392271.6:ENST00000574110.5:ENST00000574666.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	131	2	2.50297	2.547185	2.5914	0.00135188	3.14221e-4	0.0336321	0.0159645
chr4	169697279	169697370	2080653	0	+	0.395604	(0.378,0.408]	chr4	205659	2	CDS	CDS:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CLCN3	ENSG00000109572.15	ENST00000347613.8:ENST00000360642.7:ENST00000513761.6:ENST00000613795.4:ENST00000507875.5:ENST00000515420.1	protein_coding	protein_coding	protein_coding	protein_coding	6	94	2	2.30499	2.5471500000000002	2.78931	0.00683258	6.20851e-4	0.0713163	0.0223951
chr1	8808833	8808932	373699	0	-	0.535354	(0.515,0.57]	chr1	43563	19	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000656437.1:ENST00000659924.1	protein_coding	protein_coding	protein_coding	protein_coding	2	30	2	2.43589	2.547115	2.65834	0.0370871	0.0187418	0.139194	0.117523
chr1	19483689	19483789	388891	0	-	0.57	(0.515,0.57]	chr1	46395	1	SS5_PROX	SS5_PROX:INTRON	CAPZB	ENSG00000077549.19	ENST00000264202.8:ENST00000264203.7:ENST00000375142.5:ENST00000482808.2:ENST00000674449.1:ENST00000674390.1:ENST00000375144.6:ENST00000674432.1:ENST00000433834.5:ENST00000459967.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	30	2	2.43589	2.547115	2.65834	0.0370871	0.0187418	0.139194	0.117523
chr1	95138274	95138367	166775	0	+	0.516129	(0.515,0.57]	chr1	18101	1	EXON_LNCRNA	EXON_LNCRNA:INTRON	TLCD4:TLCD4-RWDD3:ENSG00000231992	ENSG00000152078.10:ENSG00000271092.5:ENSG00000231992.1	ENST00000370203.9:ENST00000456991.5:ENST00000604534.5:ENST00000455656.1:ENST00000434207.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	2	30	2	2.43589	2.547115	2.65834	0.0370871	0.0187418	0.139194	0.117523
chr10	73778135	73778231	4454111	0	+	0.53125	(0.515,0.57]	chr10	411177	21	INTRON	INTRON	FUT11	ENSG00000196968.11	ENST00000489264.2	protein_coding	processed_transcript	protein_coding	processed_transcript	2	30	2	2.43589	2.547115	2.65834	0.0370871	0.0187418	0.139194	0.117523
chr16	29612004	29612103	6471721	0	-	0.525253	(0.515,0.57]	chr16	625301	172	INTRON	INTRON	ENSG00000288632	ENSG00000288632.1	ENST00000675579.1	lncRNA	lncRNA	lncRNA	lncRNA	2	30	2	2.43589	2.547115	2.65834	0.0370871	0.0187418	0.139194	0.117523
chr22	31427582	31427682	7503297	0	+	0.54	(0.515,0.57]	chr22	765634	4	SS5_PROX	SS5_PROX:INTRON	DRG1	ENSG00000185721.13	ENST00000331457.9:ENST00000469673.1:ENST00000548143.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	30	2	2.43589	2.547115	2.65834	0.0370871	0.0187418	0.139194	0.117523
chr3	138949011	138949111	1515371	0	+	0.55	(0.515,0.57]	chr3	158473	1	SS3_PROX	SS3_PROX:INTRON	FOXL2NB	ENSG00000206262.9	ENST00000383165.4:ENST00000470680.5:ENST00000498709.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	30	2	2.43589	2.547115	2.65834	0.0370871	0.0187418	0.139194	0.117523
chr2	113239029	113239129	853082	0	+	0.49	(0.476,0.515]	chr2	95731	16	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	PAX8-AS1	ENSG00000189223.15	ENST00000456685.5:ENST00000556070.6:ENST00000623306.3:ENST00000451179.6:ENST00000653055.1:ENST00000437551.6:ENST00000665814.1:ENST00000669027.1:ENST00000617509.4:ENST00000616073.5:ENST00000422956.6:ENST00000661674.1:ENST00000617278.2:ENST00000654203.1:ENST00000663248.1:ENST00000333145.9:ENST00000665717.1:ENST00000624706.3:ENST00000445745.6:ENST00000436293.6:ENST00000661255.1:ENST00000555766.1:ENST00000613966.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	10	119	2	1.67675	2.54711	3.41747	0.00953323	1.45317e-4	0.0863913	0.0110154
chrX	2471535	2471635	7745322	0	-	0.38	(0.378,0.408]	chrX	792966	459	INTRON	INTRON	DHRSX	ENSG00000169084.15	ENST00000334651.11:ENST00000412516.7:ENST00000444280.6:ENST00000441131.7:ENST00000478825.7:ENST00000430536.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	37	2	2.36428	2.547105	2.72993	0.0441088	0.0188736	0.162255	0.108861
chr2	106093756	106093846	1201318	0	-	0.322222	(0.32,0.35]	chr2	128363	6	UTR3	UTR3:EXON_MRNA	UXS1	ENSG00000115652.15	ENST00000497604.1:ENST00000283148.12:ENST00000409501.7:ENST00000409032.5:ENST00000473338.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	54	2	2.19668	2.5470550000000003	2.89743	0.021398	0.0127608	0.123719	0.0926667
chrX	114019970	114020070	7868240	0	-	0.34	(0.32,0.35]	chrX	801551	281	INTRON	INTRON	XACT	ENSG00000241743.4	ENST00000468762.3:ENST00000649506.1	lncRNA	lncRNA	lncRNA	lncRNA	3	54	2	2.19668	2.5470550000000003	2.89743	0.021398	0.0127608	0.123719	0.0926667
chr10	70162110	70162189	4640807	0	-	0.468354	(0.44,0.476]	chr10	426902	2	SS3_PROX	SS3_PROX:INTRON	SAR1A	ENSG00000079332.15	ENST00000373242.6:ENST00000373241.9:ENST00000373238.5:ENST00000373239.2	protein_coding	protein_coding	protein_coding	protein_coding	6	71	2	1.58453	2.547035	3.50954	0.0293513	0.00116647	0.142102	0.0312127
chr1	47290679	47290778	445869	0	-	0.363636	(0.35,0.378]	chr1	54033	7	INTRON	INTRON	STIL	ENSG00000123473.17	ENST00000360380.7:ENST00000371877.8:ENST00000337817.10:ENST00000683977.1:ENST00000682977.1:ENST00000396221.6:ENST00000447475.7:ENST00000436811.2:ENST00000682165.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	139	2	1.85187	2.54703	3.24219	0.00366829	4.4837e-4	0.056059199999999997	0.0196044
chr3	25737146	25737239	1642367	0	-	0.387097	(0.378,0.408]	chr3	168640	9	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	NGLY1	ENSG00000151092.18	ENST00000280700.10:ENST00000428257.5:ENST00000675217.1:ENST00000676225.1:ENST00000493324.5:ENST00000396649.7:ENST00000675178.1:ENST00000675680.1:ENST00000308710.9:ENST00000280699.13:ENST00000674841.1:ENST00000675234.1:ENST00000463611.2:ENST00000417874.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	66	2	2.46345	2.54701	2.63057	0.00827342	0.0053733	0.0813266	0.0642754
chr21	10416209	10416308	7368156	0	+	0.373737	(0.35,0.378]	chr21	751975	9	INTRON	INTRON	BAGE2	ENSG00000187172.15	ENST00000474011.5:ENST00000470054.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	3	51	2	1.87717	2.54697	3.21677	0.0555068	0.00313804	0.165463	0.0514466
chr1	229546113	229546211	653644	0	-	0.428571	(0.408,0.44]	chr1	77476	34	INTRON	INTRON	ABCB10	ENSG00000135776.5	ENST00000344517.5	protein_coding	protein_coding	protein_coding	protein_coding	10	144	2	2.42752	2.5469150000000003	2.66631	6.35449e-4	4.45372e-4	0.0231636	0.0191142
chrX	71381242	71381342	7678362	0	+	0.36	(0.35,0.378]	chrX	786165	1	SS3_PROX	SS3_PROX:INTRON	TAF1	ENSG00000147133.17	ENST00000683202.1:ENST00000373790.9:ENST00000423759.6:ENST00000683782.1:ENST00000683715.1:ENST00000683668.1:ENST00000276072.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	108	2	2.10773	2.5469	2.98607	0.00514472	9.86191e-4	0.062965	0.0288537
chr1	42957536	42957636	433135	0	-	0.39	(0.378,0.408]	chr1	52506	28	INTRON	INTRON	SLC2A1	ENSG00000117394.24	ENST00000426263.10:ENST00000630287.2:ENST00000675112.1:ENST00000674765.1:ENST00000625233.2:ENST00000372500.4:ENST00000415851.6:ENST00000630821.1:ENST00000460369.3:ENST00000676097.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	109	2	1.59634	2.5468349999999997	3.49733	0.0244222	6.46714e-5	0.12011	0.00666922
chr1	246307305	246307404	678708	0	-	0.353535	(0.35,0.378]	chr1	79737	14	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000453676.5:ENST00000462422.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	51	2	2.04224	2.5468	3.05136	0.0363073	0.00578894	0.138959	0.0684334
chr21	15048267	15048367	7432095	0	-	0.36	(0.35,0.378]	chr21	757990	43	INTRON	INTRON	NRIP1	ENSG00000180530.11	ENST00000400202.5:ENST00000318948.7:ENST00000400199.5:ENST00000638122.1:ENST00000637963.1:ENST00000637630.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	51	2	2.04224	2.5468	3.05136	0.0363073	0.00578894	0.138959	0.0684334
chr2	47162754	47162847	1114753	0	-	0.494624	(0.476,0.515]	chr2	119554	2	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	CALM2	ENSG00000143933.20	ENST00000272298.12:ENST00000652974.1:ENST00000460218.5:ENST00000655450.1:ENST00000432899.5:ENST00000456319.6:ENST00000656538.1:ENST00000668667.1:ENST00000670593.1:ENST00000655728.1:ENST00000482532.5:ENST00000409563.5:ENST00000484408.5:ENST00000489742.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	56	2	1.80284	2.54679	3.29074	0.033161	0.00272563	0.145899	0.0467523
chr11	66366763	66366863	4968292	0	-	0.48	(0.476,0.515]	chr11	468511	2	SS3_PROX	SS3_PROX:INTRON	SLC29A2	ENSG00000174669.12	ENST00000311161.11:ENST00000357440.7:ENST00000544554.5:ENST00000540386.5:ENST00000619145.4:ENST00000546034.1:ENST00000541567.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	63	2	2.43242	2.54677	2.66112	0.0091895	0.0044598	0.0855292	0.0592169
chr16	22495506	22495606	6322560	0	+	0.56	(0.515,0.57]	chr16	605439	33	INTRON	INTRON	NPIPB5	ENSG00000243716.11	ENST00000415654.5:ENST00000415833.6:ENST00000546168.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	44	2	2.46104	2.54677	2.6325	0.032841	0.00439001	0.145164	0.0585064
chr4	55411688	55411763	1960748	0	+	0.36	(0.35,0.378]	chr4	196556	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	TMEM165	ENSG00000134851.13	ENST00000381334.10:ENST00000506198.5:ENST00000508404.5:ENST00000511710.1:ENST00000502797.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	134	2	2.12458	2.546755	2.96893	0.00149997	0.00119771	0.0351802	0.0318521
chr14	102018177	102018263	5820819	0	+	0.383721	(0.378,0.408]	chr14	552164	3	SS3_PROX	SS3_PROX:INTRON	DYNC1H1	ENSG00000197102.14	ENST00000360184.10:ENST00000684561.1:ENST00000680313.1:ENST00000679720.1:ENST00000680715.1:ENST00000681283.1:ENST00000681822.1:ENST00000679910.1:ENST00000681574.1:ENST00000645039.2:ENST00000645149.2:ENST00000680200.1:ENST00000680120.1:ENST00000644881.2:ENST00000681066.1:ENST00000680423.1:ENST00000681536.1:ENST00000679486.1:ENST00000681010.1:ENST00000679629.1:ENST00000681123.1:ENST00000680874.1:ENST00000680137.1:ENST00000643508.2:ENST00000680808.1:ENST00000681311.1:ENST00000647366.1:ENST00000643279.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	50	2	2.30628	2.546665	2.78705	0.0163339	0.0135539	0.101571	0.101363
chr2	181918298	181918398	937226	0	+	0.4	(0.378,0.408]	chr2	102725	14	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	ITPRID2	ENSG00000138434.17	ENST00000431877.7:ENST00000320370.11:ENST00000409001.5:ENST00000440623.5:ENST00000454579.5:ENST00000416081.5:ENST00000491720.5:ENST00000409136.5:ENST00000491866.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	50	2	2.30628	2.546665	2.78705	0.0163339	0.0135539	0.101571	0.101363
chr10	124776876	124776976	4712397	0	-	0.28	[0,0.28]	chr10	434817	17	INTRON	INTRON	EEF1AKMT2	ENSG00000203791.15	ENST00000652548.1:ENST00000466270.5:ENST00000368836.7:ENST00000464099.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	91	2	2.27384	2.54657	2.8193	0.0233847	0.00285248	0.11839	0.0494641
chr17	70125868	70125968	6828707	0	-	0.45	(0.44,0.476]	chr17	675009	527	INTRON	INTRON	ENSG00000230258	ENSG00000230258.6	ENST00000435112.5	lncRNA	lncRNA	lncRNA	lncRNA	19	264	2	2.54437	2.5465299999999997	2.54869	2.26813e-4	2.73227e-5	0.0138494	0.00413598
chr4	145097144	145097244	2254753	0	-	0.42	(0.408,0.44]	chr4	220127	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ANAPC10	ENSG00000164162.14	ENST00000641499.1:ENST00000506851.5:ENST00000613466.4:ENST00000507656.6:ENST00000502651.5:ENST00000309439.9:ENST00000451299.6:ENST00000510270.5:ENST00000511466.5:ENST00000514390.5:ENST00000513054.5:ENST00000502562.5:ENST00000512680.5:ENST00000508087.5:ENST00000504721.5:ENST00000514704.5:ENST00000507134.5:ENST00000502847.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	63	2	2.26792	2.5465150000000003	2.82511	0.0179973	0.00189528	0.106756	0.0402736
chrX	9527789	9527889	7619282	0	+	0.51	(0.476,0.515]	chrX	779944	256	INTRON	INTRON	TBL1X	ENSG00000101849.18	ENST00000407597.7:ENST00000380961.5:ENST00000424279.6:ENST00000645353.2:ENST00000422314.5	protein_coding	protein_coding	protein_coding	protein_coding	6	90	2	2.53419	2.5465150000000003	2.55884	0.00251905	0.00186081	0.0446195	0.039946
chr14	73749321	73749421	5920498	0	-	0.45	(0.44,0.476]	chr14	562351	87	INTRON	INTRON	MIDEAS	ENSG00000156030.14	ENST00000394071.6:ENST00000423556.7:ENST00000286523.9:ENST00000421708.1:ENST00000486739.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	57	2	1.94723	2.54641	3.14559	0.0227424	0.00384923	0.117618	0.0562562
chr17	61833438	61833538	6808633	0	-	0.47	(0.44,0.476]	chr17	672605	243	INTRON	INTRON	BRIP1	ENSG00000136492.10	ENST00000259008.7:ENST00000682755.1:ENST00000682453.1:ENST00000683039.1:ENST00000682989.1:ENST00000682589.1:ENST00000683235.1:ENST00000682477.1:ENST00000684584.1:ENST00000577598.5:ENST00000682066.1:ENST00000584322.2:ENST00000683381.1:ENST00000579028.2:ENST00000682611.1:ENST00000683692.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	57	2	1.94723	2.54641	3.14559	0.0227424	0.00384923	0.117618	0.0562562
chr1	227022368	227022466	648720	0	-	0.387755	(0.378,0.408]	chr1	76912	50	INTRON	INTRON	CDC42BPA	ENSG00000143776.20	ENST00000366766.8:ENST00000366769.7:ENST00000334218.9:ENST00000366767.7:ENST00000448940.5:ENST00000442054.5:ENST00000366764.8:ENST00000429440.5	protein_coding	protein_coding	protein_coding	protein_coding	4	59	2	1.53052	2.5463	3.56208	0.0744544	6.94246e-4	0.192012	0.0240761
chr9	97508185	97508285	4171653	0	+	0.54	(0.515,0.57]	chr9	380069	60	INTRON	INTRON	TMOD1	ENSG00000136842.14	ENST00000395211.6:ENST00000259365.9	protein_coding	protein_coding	protein_coding	protein_coding	4	55	2	2.08547	2.5462	3.00693	0.0289426	7.26845e-4	0.1274	0.0245647
chr19	1391465	1391565	6995046	0	+	0.43	(0.408,0.44]	chr19	693153	3	SS5_PROX	SS5_PROX:INTRON	NDUFS7	ENSG00000115286.21	ENST00000546283.5:ENST00000545446.5:ENST00000543289.5:ENST00000539480.5:ENST00000538662.5:ENST00000313408.11:ENST00000436115.6:ENST00000233627.14:ENST00000534853.5:ENST00000546172.7:ENST00000414651.3:ENST00000538929.5:ENST00000622587.4:ENST00000538523.5:ENST00000540530.5:ENST00000535382.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	156	2	1.85874	2.546175	3.23361	0.00680022	1.44305e-5	0.071184	0.00284474
chr2	144389374	144389462	1240467	0	-	0.329545	(0.32,0.35]	chr2	131636	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	ZEB2	ENSG00000169554.23	ENST00000639389.1:ENST00000636471.1:ENST00000627532.3:ENST00000638128.1:ENST00000637304.1:ENST00000636179.1:ENST00000636820.1:ENST00000637045.1:ENST00000636413.1:ENST00000638007.1:ENST00000638087.1:ENST00000419938.5:ENST00000409487.7:ENST00000440875.6:ENST00000636732.2:ENST00000636026.2:ENST00000647488.1:ENST00000675069.1:ENST00000689298.1:ENST00000539609.7:ENST00000558170.6:ENST00000303660.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	41	2	2.40308	2.546145	2.68921	0.0417732	0.0230336	0.161736	0.118056
chr2	152754403	152754502	894616	0	+	0.343434	(0.32,0.35]	chr2	99130	172	INTRON	INTRON	ARL6IP6	ENSG00000177917.12	ENST00000690727.1:ENST00000685752.1:ENST00000688293.1:ENST00000686839.1:ENST00000689155.1:ENST00000691702.1:ENST00000691523.1:ENST00000688012.1:ENST00000687504.1:ENST00000455875.6:ENST00000692399.1:ENST00000425034.6:ENST00000686080.1:ENST00000326446.10:ENST00000463690.2:ENST00000688130.1:ENST00000495469.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	41	2	2.40308	2.546145	2.68921	0.0417732	0.0230336	0.161736	0.118056
chr20	17967291	17967390	7320557	0	-	0.333333	(0.32,0.35]	chr20	745337	45	INTRON	INTRON	SNX5	ENSG00000089006.17	ENST00000377768.7:ENST00000490175.5:ENST00000377759.9:ENST00000431277.5:ENST00000419004.2:ENST00000474883.5:ENST00000469704.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	41	2	2.40308	2.546145	2.68921	0.0417732	0.0230336	0.161736	0.118056
chr19	49924801	49924900	7201998	0	-	0.59596	(0.57,1]	chr19	730674	58	INTRON	INTRON	NUP62	ENSG00000213024.12	ENST00000422090.2:ENST00000352066.8:ENST00000597723.5:ENST00000597029.5:ENST00000596217.1:ENST00000595463.5:ENST00000593652.5:ENST00000599567.5:ENST00000596437.5:ENST00000600583.5:ENST00000594673.5:ENST00000599788.1:ENST00000600935.1:ENST00000596680.5:ENST00000601665.5:ENST00000599560.5:ENST00000599186.5:ENST00000597814.1:ENST00000599830.1:ENST00000598301.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	26	2	1.77365	2.54612	3.31859	0.0670385	0.00137292	0.183051	0.0340241
chr19	23794347	23794447	7042749	0	+	0.34	(0.32,0.35]	chr19	702227	70	INTRON	INTRON	RPSAP58	ENSG00000288920.1	ENST00000471224.5:ENST00000692590.1:ENST00000475499.2:ENST00000686829.1:ENST00000689525.1:ENST00000691397.1:ENST00000688405.1:ENST00000687994.1:ENST00000484897.4:ENST00000685490.1:ENST00000462186.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	78	2	2.19668	2.546065	2.89545	0.021398	0.0022546	0.123719	0.0425438
chr21	39192648	39192747	7464285	0	-	0.323232	(0.32,0.35]	chr21	760356	54	UTR3	UTR3:EXON_MRNA:INTRON	BRWD1	ENSG00000185658.14	ENST00000333229.6:ENST00000342449.8:ENST00000446924.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	88	2	2.1298	2.5460599999999998	2.96232	0.0141189	0.00118924	0.0959618	0.031662
chr7	97871971	97872068	3579393	0	-	0.494845	(0.476,0.515]	chr7	333304	4	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ASNS:ENSG00000284707	ENSG00000070669.17:ENSG00000284707.2	ENST00000394308.8:ENST00000641784.1:ENST00000641390.1:ENST00000175506.8:ENST00000394309.7:ENST00000437628.5:ENST00000641315.1:ENST00000422745.5:ENST00000455086.5:ENST00000444334.5:ENST00000442734.5:ENST00000453600.5:ENST00000451771.5:ENST00000414884.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	6	98	2	1.79187	2.546045	3.30022	0.0362169	3.42965e-5	0.138959	0.0046762
chr15	49171375	49171475	6019120	0	+	0.43	(0.408,0.44]	chr15	573674	4	INTRON	INTRON	GALK2	ENSG00000156958.15	ENST00000559883.5:ENST00000559963.5:ENST00000327171.7:ENST00000560654.5:ENST00000558775.5:ENST00000561074.5:ENST00000559040.1:ENST00000396509.6:ENST00000558956.5:ENST00000559208.5:ENST00000560031.6:ENST00000559095.1:ENST00000560119.5:ENST00000558145.5:ENST00000544523.5:ENST00000560138.5:ENST00000559423.5:ENST00000559454.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	66	2	2.19398	2.545965	2.89795	0.0110735	0.0043348	0.0873897	0.0600652
chr18	31899939	31900036	6960956	0	-	0.525773	(0.515,0.57]	chr18	688734	17	INTRON	INTRON	TRAPPC8	ENSG00000153339.15	ENST00000283351.10:ENST00000580104.5:ENST00000582539.5:ENST00000582513.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	40	2	2.32836	2.54595	2.76354	0.0147344	0.0126662	0.0983813	0.0982897
chr1	12003073	12003170	26682	0	+	0.402062	(0.378,0.408]	chr1	3133	11	EXON_MRNA	EXON_MRNA:INTRON	MFN2	ENSG00000116688.18	ENST00000444836.5:ENST00000674817.1:ENST00000675053.1:ENST00000675298.1:ENST00000675817.1:ENST00000675194.1:ENST00000674548.1:ENST00000675959.1:ENST00000675872.1:ENST00000676426.1:ENST00000674658.1:ENST00000674910.1:ENST00000675231.1:ENST00000235329.10:ENST00000676293.1:ENST00000675919.1:ENST00000675987.1:ENST00000675512.1:ENST00000675113.1:ENST00000675483.1:ENST00000675528.1:ENST00000675404.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	78	2	2.39048	2.545945	2.70141	0.00411614	0.00395852	0.057511	0.0564981
chr9	135953079	135953179	4372486	0	-	0.6	(0.57,1]	chr9	402541	48	INTRON	INTRON	UBAC1	ENSG00000130560.9	ENST00000371756.4:ENST00000478485.1:ENST00000486258.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	35	2	1.52818	2.545935	3.56369	0.0508101	4.26536e-4	0.175989	0.0189958
chr2	53888404	53888489	1119703	0	-	0.294118	(0.28,0.32]	chr2	119896	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PSME4	ENSG00000068878.15	ENST00000404125.6:ENST00000389993.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	71	2	2.21798	2.5458999999999996	2.87382	0.014868	0.00901091	0.0989021	0.0851009
chr1	75792506	75792606	144688	0	+	0.32	(0.28,0.32]	chr1	16344	2	SS5_PROX	SS5_PROX:INTRON	RABGGTB	ENSG00000137955.16	ENST00000496055.5:ENST00000319942.8:ENST00000471759.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	92	2	1.38068	2.5458749999999997	3.71107	0.0590236	8.39788e-4	0.189982	0.0266487
chr2	151449630	151449728	893622	0	+	0.316327	(0.28,0.32]	chr2	98976	27	INTRON	INTRON	RIF1	ENSG00000080345.18	ENST00000453091.6:ENST00000428287.6:ENST00000444746.7:ENST00000243326.9:ENST00000414861.6:ENST00000430328.6	protein_coding	protein_coding	protein_coding	protein_coding	5	81	2	1.96841	2.545865	3.12332	0.0124199	0.00698537	0.0973643	0.0718189
chr19	47141222	47141321	7083973	0	+	0.525253	(0.515,0.57]	chr19	708741	53	INTRON	INTRON	SAE1	ENSG00000142230.13	ENST00000594144.5:ENST00000594526.5:ENST00000597808.5:ENST00000413379.7:ENST00000600706.5:ENST00000270225.12:ENST00000598840.5:ENST00000414294.6:ENST00000600753.1:ENST00000660039.1:ENST00000664120.1:ENST00000596995.1:ENST00000392776.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	40	2	2.1885	2.5458049999999997	2.90311	0.0202537	0.0094233	0.121364	0.0817766
chr4	73170888	73170987	2159946	0	-	0.535354	(0.515,0.57]	chr4	212788	14	INTRON	INTRON	ANKRD17	ENSG00000132466.20	ENST00000358602.9:ENST00000558247.5:ENST00000330838.10:ENST00000509867.6:ENST00000561029.1:ENST00000559367.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	40	2	2.1885	2.5458049999999997	2.90311	0.0202537	0.0094233	0.121364	0.0817766
chr12	116147905	116148005	5424248	0	-	0.58	(0.57,1]	chr12	518263	360	INTRON	INTRON	MED13L	ENSG00000123066.9	ENST00000281928.9:ENST00000650226.1:ENST00000548743.2:ENST00000647567.1:ENST00000551197.2	protein_coding	protein_coding	protein_coding	protein_coding	5	40	2	2.01216	2.54577	3.07938	0.0163389	4.22401e-4	0.101571	0.0183838
chr6	124968097	124968196	2951528	0	+	0.363636	(0.35,0.378]	chr6	277668	43	INTRON	INTRON	RNF217	ENSG00000146373.17	ENST00000521654.7:ENST00000560949.5:ENST00000519971.1:ENST00000519565.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	11	160	2	2.33522	2.5457650000000003	2.75631	0.00113582	3.78218e-4	0.0307499	0.0176313
chr19	35540933	35541032	7172447	0	-	0.464646	(0.44,0.476]	chr19	724801	3	EXON_LNCRNA	EXON_LNCRNA	TMEM147-AS1	ENSG00000236144.9	ENST00000589137.5:ENST00000444728.3:ENST00000590717.2:ENST00000660248.1:ENST00000670097.1:ENST00000667891.1:ENST00000660839.1	lncRNA	lncRNA	lncRNA	lncRNA	8	122	2	2.32451	2.54576	2.76701	0.00241361	3.70668e-4	0.0453973	0.0178698
chr10	21551921	21552021	4404587	0	+	0.5	(0.476,0.515]	chr10	406431	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	MLLT10	ENSG00000078403.17	ENST00000651097.1:ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000377100.8:ENST00000377091.7:ENST00000650772.1:ENST00000651298.1:ENST00000652497.1:ENST00000495130.5:ENST00000377059.7:ENST00000621220.4:ENST00000476557.5:ENST00000462999.5:ENST00000430455.2:ENST00000479634.1:ENST00000480415.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	56	2	1.69138	2.545705	3.40003	0.0481165	0.00139193	0.153019	0.0341261
chr2	69939077	69939176	805753	0	+	0.373737	(0.35,0.378]	chr2	89939	9	UTR3	UTR3:EXON_MRNA:INTRON	MXD1	ENSG00000059728.11	ENST00000540449.5:ENST00000264444.7:ENST00000465446.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	157	2	2.3558500000000002	2.5457	2.73555	7.36654e-4	5.41138e-4	0.0247853	0.0215026
chr4	82844854	82844931	2179612	0	-	0.285714	(0.28,0.32]	chr4	214279	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SEC31A	ENSG00000138674.17	ENST00000395310.7:ENST00000513858.5:ENST00000348405.8:ENST00000448323.5:ENST00000311785.11:ENST00000509142.5:ENST00000443462.6:ENST00000500777.6:ENST00000505472.5:ENST00000355196.6:ENST00000508502.5:ENST00000264405.9:ENST00000505984.5:ENST00000511338.1:ENST00000508479.5	protein_coding	protein_coding	protein_coding	protein_coding	6	97	2	2.26355	2.54562	2.82769	0.0169391	0.00229405	0.103888	0.0439319
chr20	32403506	32403606	7256278	0	+	0.52	(0.515,0.57]	chr20	737076	311	INTRON	INTRON	ASXL1	ENSG00000171456.21	ENST00000651418.1:ENST00000375687.10:ENST00000613218.4:ENST00000644587.1:ENST00000620121.4:ENST00000646985.1:ENST00000643168.1:ENST00000306058.9:ENST00000645688.1:ENST00000470145.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	107	2	2.35777	2.5456149999999997	2.73346	8.38802e-4	5.59179e-4	0.0266487	0.0215535
chr1	27425967	27426067	406121	0	-	0.36	(0.35,0.378]	chr1	48978	65	INTRON	INTRON	WASF2	ENSG00000158195.11	ENST00000618852.5:ENST00000536657.1	protein_coding	protein_coding	protein_coding	protein_coding	2	38	2	2.1617	2.54561	2.92952	0.0771502	0.00881187	0.196285	0.084878
chr12	55925483	55925582	5333214	0	-	0.373737	(0.35,0.378]	chr12	509228	108	INTRON	INTRON	PYM1	ENSG00000170473.17	ENST00000408946.7:ENST00000398213.4:ENST00000302533.6:ENST00000557259.5:ENST00000547925.1:ENST00000549939.1:ENST00000454792.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	38	2	2.1617	2.54561	2.92952	0.0771502	0.00881187	0.196285	0.084878
chr12	79874237	79874337	5375925	0	-	0.36	(0.35,0.378]	chr12	512793	9	INTRON	INTRON	PPP1R12A	ENSG00000058272.19	ENST00000261207.9:ENST00000450142.7:ENST00000437004.6:ENST00000546369.5:ENST00000550107.5:ENST00000547330.5:ENST00000550510.5	protein_coding	protein_coding	protein_coding	protein_coding	2	38	2	2.1617	2.54561	2.92952	0.0771502	0.00881187	0.196285	0.084878
chr3	119443054	119443153	1791774	0	-	0.363636	(0.35,0.378]	chr3	179928	46	INTRON	INTRON	TMEM39A	ENSG00000176142.13	ENST00000319172.10:ENST00000438581.6:ENST00000491685.5:ENST00000486159.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	38	2	2.1617	2.54561	2.92952	0.0771502	0.00881187	0.196285	0.084878
chr7	22855742	22855835	3288698	0	+	0.55914	(0.515,0.57]	chr7	305426	4	INTRON	INTRON	SNHG26	ENSG00000228649.10	ENST00000415611.8:ENST00000667557.1:ENST00000422542.4:ENST00000656301.1:ENST00000661147.1:ENST00000656687.2:ENST00000662021.1:ENST00000691516.1:ENST00000685098.1:ENST00000689892.1:ENST00000663057.1:ENST00000657608.1:ENST00000688000.1:ENST00000690219.1:ENST00000658124.1:ENST00000661582.1:ENST00000671680.1	lncRNA	lncRNA	lncRNA	lncRNA	6	85	2	2.32836	2.545515	2.76267	0.0126662	2.74246e-4	0.0982897	0.0151711
chr16	1862616	1862714	6430260	0	-	0.510204	(0.476,0.515]	chr16	618392	1	INTRON	INTRON	MEIOB	ENSG00000162039.17	ENST00000325962.9:ENST00000470044.5:ENST00000397344.7:ENST00000496541.6:ENST00000460494.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	13	173	2	2.20676	2.5455050000000004	2.88425	5.17055e-4	1.92034e-4	0.0203753	0.012709
chr6	47600041	47600140	2874803	0	+	0.272727	[0,0.28]	chr6	272798	2	INTRON	INTRON	CD2AP	ENSG00000198087.7	ENST00000359314.5	protein_coding	protein_coding	protein_coding	protein_coding	3	68	2	2.49527	2.545485	2.5957	0.0436497	0.00656974	0.14882	0.0736092
chr2	113897532	113897631	854318	0	+	0.494949	(0.476,0.515]	chr2	95895	64	INTRON	INTRON	ACTR3	ENSG00000115091.12	ENST00000443297.5:ENST00000263238.7:ENST00000415792.5:ENST00000446821.5:ENST00000535589.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	77	2	1.48441	2.54534	3.60627	0.0315624	7.49088e-4	0.144381	0.0251179
chr1	41161532	41161632	430017	0	-	0.3	(0.28,0.32]	chr1	52243	1	SS3_PROX	SS3_PROX:INTRON	SCMH1	ENSG00000010803.17	ENST00000695335.1:ENST00000372596.5:ENST00000372597.5:ENST00000337495.9:ENST00000372595.5:ENST00000695336.1	protein_coding	protein_coding	protein_coding	protein_coding	8	147	2	2.32608	2.5453200000000002	2.76456	0.00172054	0.00147147	0.0383014	0.0348192
chr1	40747805	40747905	82930	0	+	0.34	(0.32,0.35]	chr1	10756	2	SS5_PROX	SS5_PROX:INTRON	NFYC	ENSG00000066136.21	ENST00000467203.5:ENST00000424419.6:ENST00000427410.6:ENST00000447388.8:ENST00000425457.6:ENST00000453631.5:ENST00000456393.6:ENST00000372654.5:ENST00000372653.5:ENST00000372669.8:ENST00000372652.5:ENST00000372651.5:ENST00000531464.5:ENST00000440226.7:ENST00000525290.5:ENST00000416859.6:ENST00000530965.5:ENST00000308733.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	40	2	2.37794	2.545315	2.71269	0.0498601	0.0181461	0.156383	0.114853
chr2	61369820	61369920	1129534	0	-	0.34	(0.32,0.35]	chr2	121449	1	SS5_PROX	SS5_PROX:INTRON	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000453133.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	40	2	2.37794	2.545315	2.71269	0.0498601	0.0181461	0.156383	0.114853
chr4	1944375	1944474	1911319	0	+	0.343434	(0.32,0.35]	chr4	191792	21	UTR3	UTR3:EXON_MRNA:INTRON	NSD2	ENSG00000109685.19	ENST00000508803.6:ENST00000398261.6:ENST00000382891.9:ENST00000353275.9:ENST00000382892.6:ENST00000382895.7:ENST00000312087.10:ENST00000503128.5:ENST00000677559.1:ENST00000678714.1:ENST00000511904.1:ENST00000513726.5:ENST00000482415.6:ENST00000514329.5:ENST00000502425.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	40	2	2.37794	2.545315	2.71269	0.0498601	0.0181461	0.156383	0.114853
chr7	121272428	121272527	3396501	0	+	0.474747	(0.44,0.476]	chr7	317818	6	INTRON	INTRON	CPED1	ENSG00000106034.18	ENST00000310396.10	protein_coding	protein_coding	protein_coding	protein_coding	6	90	2	2.38636	2.545285	2.70421	0.0047296	9.23275e-4	0.0600445	0.0278392
chr21	42877643	42877737	7467893	0	-	0.308511	(0.28,0.32]	chr21	760985	5	INTRON	INTRON	WDR4	ENSG00000160193.12	ENST00000330317.6:ENST00000476326.5:ENST00000398208.3:ENST00000492742.5:ENST00000479429.5:ENST00000463902.5:ENST00000470658.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	59	2	1.96376	2.54528	3.1268	0.0480066	0.00508956	0.153019	0.0646039
chr10	124400739	124400839	4710642	0	-	0.24	[0,0.28]	chr10	434684	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	OAT	ENSG00000065154.12	ENST00000539214.5:ENST00000368845.6:ENST00000471127.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	71	2	2.27119	2.545245	2.8193	0.070351	0.00285248	0.184298	0.0494641
chr10	31901183	31901283	4590044	0	-	0.41	(0.408,0.44]	chr10	423163	392	INTRON	INTRON	ARHGAP12	ENSG00000165322.18	ENST00000344936.7:ENST00000375245.8:ENST00000396144.8:ENST00000375250.9:ENST00000311380.8	protein_coding	protein_coding	protein_coding	protein_coding	6	94	2	2.21857	2.545235	2.8719	0.0209591	1.3686e-4	0.112046	0.0100759
chr6	161061324	161061424	3025191	0	+	0.36	(0.35,0.378]	chr6	282325	110	INTRON	INTRON	MAP3K4	ENSG00000085511.20	ENST00000366919.6:ENST00000392142.9:ENST00000542952.5:ENST00000366920.6:ENST00000348824.11:ENST00000544041.5:ENST00000490904.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	61	2	1.87586	2.54521	3.21456	0.0268864	0.00420814	0.135275	0.0572185
chr7	92572693	92572792	3570740	0	-	0.383838	(0.378,0.408]	chr7	332720	24	INTRON	INTRON	FAM133B	ENSG00000234545.8	ENST00000445716.6:ENST00000438306.5:ENST00000415397.6:ENST00000481407.5:ENST00000427372.5:ENST00000494079.1:ENST00000468931.1:ENST00000490747.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	130	2	2.2403	2.5451949999999997	2.85009	0.00125943	6.76594e-4	0.03295	0.0238119
chr5	149513709	149513806	2750696	0	-	0.494845	(0.476,0.515]	chr5	259043	1	INTRON	INTRON	CSNK1A1	ENSG00000113712.19	ENST00000261798.10:ENST00000377843.8:ENST00000657001.1:ENST00000515768.6:ENST00000606719.6:ENST00000657462.1:ENST00000661952.1:ENST00000504676.5:ENST00000515435.5:ENST00000662268.1:ENST00000657706.1:ENST00000606299.2:ENST00000670598.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	10	142	2	2.3919	2.54514	2.69838	5.51001e-4	5.07516e-4	0.0213455	0.020816
chr7	102555169	102555269	3588701	0	-	0.38	(0.378,0.408]	chr7	335032	94	INTRON	INTRON	POLR2J3	ENSG00000168255.20	ENST00000489144.5:ENST00000464525.5:ENST00000379340.9:ENST00000486319.5:ENST00000503564.5:ENST00000511773.5:ENST00000513506.6:ENST00000508848.5:ENST00000504677.5:ENST00000506060.5:ENST00000502415.5:ENST00000507355.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	14	209	2	2.36232	2.545105	2.72789	2.94476e-4	1.51521e-4	0.0153477	0.0112706
chr12	131930824	131930919	5250017	0	+	0.526316	(0.515,0.57]	chr12	499248	3	INTRON	INTRON	PUS1	ENSG00000177192.14	ENST00000443358.6:ENST00000322060.9:ENST00000376649.8:ENST00000542167.2:ENST00000538037.5:ENST00000544662.1:ENST00000456665.6:ENST00000544213.5:ENST00000535067.5:ENST00000537484.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	12	144	2	2.28716	2.5451	2.80304	4.69948e-4	1.68851e-4	0.0200794	0.0112811
chr4	82425858	82425958	2177583	0	-	0.27	[0,0.28]	chr4	214167	34	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HNRNPDL	ENSG00000152795.18	ENST00000621267.4:ENST00000614627.4:ENST00000295470.10:ENST00000507721.5:ENST00000502762.4:ENST00000349655.8:ENST00000602300.5:ENST00000630114.2:ENST00000630827.1:ENST00000514511.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	174	2	2.30938	2.54509	2.7808	0.00572322	4.59647e-4	0.0657377	0.0194314
chr20	32383236	32383336	7256075	0	+	0.34	(0.32,0.35]	chr20	737076	108	INTRON	INTRON	ASXL1	ENSG00000171456.21	ENST00000651418.1:ENST00000375687.10:ENST00000613218.4:ENST00000644587.1:ENST00000620121.4:ENST00000646985.1:ENST00000643168.1:ENST00000306058.9:ENST00000645688.1:ENST00000470145.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	135	2	2.52771	2.545035	2.56236	0.002892	5.57285e-4	0.0476886	0.021494
chr6	2963094	2963194	3047645	0	-	0.36	(0.35,0.378]	chr6	283590	3	SS5_PROX	SS5_PROX:INTRON	SERPINB6	ENSG00000124570.21	ENST00000643098.1:ENST00000380546.7:ENST00000380539.7:ENST00000380529.5:ENST00000649845.1:ENST00000644178.1:ENST00000612421.3:ENST00000616722.4:ENST00000642543.1:ENST00000644388.1:ENST00000380520.6:ENST00000645580.1:ENST00000644693.1:ENST00000644828.1:ENST00000646775.1:ENST00000645421.1:ENST00000643227.1:ENST00000646688.1:ENST00000644777.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	82	2	2.35838	2.54501	2.73164	0.00468156	0.00387645	0.0631419	0.0543578
chr16	87830316	87830414	6538691	0	-	0.418367	(0.408,0.44]	chr16	633592	4	UTR3	UTR3:EXON_MRNA	SLC7A5	ENSG00000103257.9	ENST00000261622.5:ENST00000565644.5	protein_coding	protein_coding	protein_coding	protein_coding	5	76	2	1.96534	2.54496	3.12458	0.0216499	4.61817e-4	0.11491	0.0194611
chr2	169619708	169619808	906836	0	+	0.34	(0.32,0.35]	chr2	100061	46	INTRON	INTRON	PPIG	ENSG00000138398.17	ENST00000678088.1:ENST00000677392.1:ENST00000433207.6:ENST00000679324.1:ENST00000414307.6:ENST00000676508.1:ENST00000260970.8:ENST00000678695.1:ENST00000409714.7:ENST00000530152.5:ENST00000677750.1:ENST00000678721.1:ENST00000462903.6:ENST00000676756.1:ENST00000679107.1:ENST00000678499.1:ENST00000678638.1:ENST00000448752.7:ENST00000417938.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	76	2	1.94202	2.544955	3.14789	0.0486128	5.00642e-4	0.153946	0.020217099999999998
chr14	61062467	61062567	5739927	0	+	0.38	(0.378,0.408]	chr14	545047	91	INTRON	INTRON	SLC38A6	ENSG00000139974.16	ENST00000354886.6:ENST00000525723.6:ENST00000491344.7:ENST00000451406.5:ENST00000529345.6:ENST00000526539.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	50	2	1.89621	2.5449450000000002	3.19368	0.0488044	0.00426861	0.173377	0.0573912
chr5	179664774	179664864	2560471	0	+	0.388889	(0.378,0.408]	chr5	244842	6	EXON_LNCRNA	EXON_LNCRNA	ENSG00000250999	ENSG00000250999.2	ENST00000661598.1	lncRNA	lncRNA	lncRNA	lncRNA	3	50	2	1.89621	2.5449450000000002	3.19368	0.0488044	0.00426861	0.173377	0.0573912
chrX	119789214	119789310	7873949	0	-	0.4375	(0.408,0.44]	chrX	801867	19	INTRON	INTRON	RPL39	ENSG00000198918.8	ENST00000361575.4:ENST00000468844.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	64	2	2.42404	2.544915	2.66579	0.019342	0.00413548	0.119831	0.0566868
chr1	23087206	23087305	398194	0	-	0.424242	(0.408,0.44]	chr1	47782	33	UTR3	UTR3:EXON_MRNA	LUZP1	ENSG00000169641.14	ENST00000302291.8	protein_coding	protein_coding	protein_coding	protein_coding	3	47	2	1.94273	2.5448950000000004	3.14706	0.0456237	0.00382411	0.149888	0.0562562
chr1	201865169	201865266	292131	0	+	0.412371	(0.408,0.44]	chr1	33597	12	INTRON	INTRON	IPO9	ENSG00000198700.10	ENST00000361565.9	protein_coding	protein_coding	protein_coding	protein_coding	3	47	2	1.94273	2.5448950000000004	3.14706	0.0456237	0.00382411	0.149888	0.0562562
chr17	31325519	31325619	6593502	0	+	0.41	(0.408,0.44]	chr17	641294	3	SS3_PROX	SS3_PROX:INTRON	NF1	ENSG00000196712.20	ENST00000696138.1:ENST00000356175.7:ENST00000691014.1:ENST00000358273.9:ENST00000579081.5:ENST00000456735.6:ENST00000493220.5:ENST00000687863.1:ENST00000581113.7:ENST00000687027.1:ENST00000693617.1:ENST00000684826.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	47	2	1.94273	2.5448950000000004	3.14706	0.0456237	0.00382411	0.149888	0.0562562
chr21	36354837	36354935	7404048	0	+	0.408163	(0.378,0.408]	chr21	754328	51	INTRON	INTRON	MORC3	ENSG00000159256.13	ENST00000400485.6:ENST00000487909.5:ENST00000485299.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	65	2	2.26009	2.54488	2.82967	0.0188651	0.00189968	0.108861	0.0402736
chr17	27557945	27558045	6581784	0	+	0.43	(0.408,0.44]	chr17	639674	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	KSR1	ENSG00000141068.15	ENST00000644974.2:ENST00000583370.5:ENST00000398988.7:ENST00000268763.10:ENST00000509603.6:ENST00000582311.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	56	2	2.08376	2.544855	3.00595	0.0129886	0.00781452	0.0991656	0.0759016
chr20	47519711	47519811	7281175	0	+	0.45	(0.44,0.476]	chr20	740469	173	INTRON	INTRON	NCOA3	ENSG00000124151.19	ENST00000371998.8:ENST00000372004.7:ENST00000371997.3	protein_coding	protein_coding	protein_coding	protein_coding	8	105	2	2.20903	2.544825	2.88062	0.001878	0.00143587	0.039073	0.0347139
chr15	75933649	75933741	6065967	0	+	0.217391	[0,0.28]	chr15	577667	7	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	FBXO22	ENSG00000167196.14	ENST00000308275.8:ENST00000569022.1:ENST00000561885.1:ENST00000564220.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	95	2	1.71434	2.54482	3.3753	0.0379383	0.00242466	0.141416	0.0454587
chr6	27129806	27129904	3072336	0	-	0.377551	(0.35,0.378]	chr6	285574	30	INTRON	INTRON	H2BC11	ENSG00000124635.9	ENST00000607124.1:ENST00000606923.1	protein_coding	protein_coding	protein_coding	protein_coding	40	592	2	2.43444	2.5448199999999996	2.6552	3.2525e-5	1.3308e-5	0.00481261	0.0027105
chr4	10113142	10113241	2107391	0	-	0.474747	(0.44,0.476]	chr4	208496	44	INTRON	INTRON	WDR1	ENSG00000071127.17	ENST00000499869.7:ENST00000382451.6:ENST00000382452.6:ENST00000502702.5:ENST00000508079.1:ENST00000505851.5:ENST00000514319.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	151	2	2.50256	2.544775	2.58699	0.00102082	2.82807e-4	0.0294041	0.015495
chr2	131266271	131266371	866043	0	+	0.44	(0.408,0.44]	chr2	97278	11	INTRON	INTRON	PLEKHB2	ENSG00000115762.17	ENST00000404460.5	protein_coding	protein_coding	protein_coding	protein_coding	4	56	2	1.9831	2.544755	3.10641	0.018491	0.00555646	0.116694	0.0648867
chr11	76020575	76020675	4834251	0	+	0.37	(0.35,0.378]	chr11	451001	32	INTRON	INTRON	UVRAG	ENSG00000198382.9	ENST00000356136.8:ENST00000528420.5:ENST00000533454.5:ENST00000531818.5:ENST00000532130.1	protein_coding	protein_coding	protein_coding	protein_coding	7	104	2	2.09348	2.54475	2.99602	0.00418185	0.00133795	0.0591344	0.0335491
chr12	121310394	121310452	5436743	0	-	0.37931	(0.378,0.408]	chr12	519846	1	SS3_PROX	SS3_PROX:INTRON	ANAPC5	ENSG00000089053.13	ENST00000261819.8:ENST00000535641.5:ENST00000541887.5:ENST00000534976.5:ENST00000441917.6:ENST00000539079.5:ENST00000544314.5:ENST00000535482.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	89	2	2.28793	2.54474	2.80155	0.00291235	0.00278307	0.0494641	0.0469265
chr3	172051241	172051341	1559660	0	+	0.29	(0.28,0.32]	chr3	161527	39	INTRON	INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000421757.5:ENST00000469491.5:ENST00000336824.8:ENST00000423424.5:ENST00000416957.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	60	2	2.45545	2.54462	2.63379	0.0438092	0.00503861	0.14901	0.0646039
chr1	174256177	174256276	258082	0	+	0.323232	(0.32,0.35]	chr1	30773	32	INTRON	INTRON	RABGAP1L	ENSG00000152061.24	ENST00000357444.10:ENST00000251507.8:ENST00000681986.1:ENST00000457696.1	protein_coding	protein_coding	protein_coding	protein_coding	6	109	2	2.37199	2.544615	2.71724	0.00465833	0.00152305	0.0629753	0.0353936
chr8	140620685	140620785	4076417	0	-	0.5	(0.476,0.515]	chr8	370285	149	INTRON	INTRON	AGO2	ENSG00000123908.12	ENST00000220592.10:ENST00000519980.5:ENST00000523609.5:ENST00000517293.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	59	2	2.21025	2.54452	2.87879	0.00999149	0.00913757	0.0879541	0.0812335
chr7	148859503	148859603	3670515	0	-	0.32	(0.28,0.32]	chr7	340628	118	INTRON	INTRON	EZH2	ENSG00000106462.12	ENST00000683292.1:ENST00000320356.7:ENST00000492143.5:ENST00000478654.5:ENST00000350995.6:ENST00000460911.5:ENST00000683744.1:ENST00000682317.1:ENST00000682263.1:ENST00000684300.1:ENST00000476773.5:ENST00000483967.5:ENST00000498186.5:ENST00000483012.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	132	2	2.50071	2.54442	2.58813	0.00418869	9.04617e-4	0.0572071	0.0276086
chr1	1473485	1473585	1582	0	+	0.51	(0.476,0.515]	chr1	364	10	INTRON	INTRON	ATAD3B	ENSG00000160072.20	ENST00000673477.1:ENST00000308647.8	protein_coding	protein_coding	protein_coding	protein_coding	14	194	2	2.18764	2.5443949999999997	2.90115	8.25991e-4	5.03736e-5	0.0265898	0.00582173
chr11	5428253	5428353	4897502	0	-	0.26	[0,0.28]	chr11	459187	810	INTRON	INTRON	HBG2:ENSG00000239920:HBE1:OR51B5	ENSG00000196565.15:ENSG00000239920.2:ENSG00000213931.7:ENSG00000167355.8	ENST00000380252.6:ENST00000380259.7:ENST00000292896.3:ENST00000380237.5:ENST00000420726.6:ENST00000420465.6:ENST00000415970.6:ENST00000418729.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:nonsense_mediated_decay:processed_transcript	7	140	2	2.24991	2.54438	2.83885	0.00399044	0.0029439	0.0550443	0.0497585
chr3	37283457	37283555	1396159	0	+	0.326531	(0.32,0.35]	chr3	146339	8	INTRON	INTRON	GOLGA4	ENSG00000144674.17	ENST00000435830.6:ENST00000444882.5:ENST00000356847.8:ENST00000450863.6:ENST00000361924.7:ENST00000429018.5:ENST00000419177.3:ENST00000437131.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	102	2	2.12641	2.544365	2.96232	0.00815266	0.00118924	0.0766625	0.031662
chr1	205199587	205199687	623026	0	-	0.54	(0.515,0.57]	chr1	74098	114	INTRON	INTRON	DSTYK	ENSG00000133059.17	ENST00000367162.8:ENST00000367161.7	protein_coding	protein_coding	protein_coding	protein_coding	2	30	2	2.34087	2.544295	2.74772	0.0469761	0.0142192	0.151917	0.103638
chr6	157902843	157902942	3016566	0	+	0.535354	(0.515,0.57]	chr6	281399	4	INTRON	INTRON	SNX9	ENSG00000130340.17	ENST00000680863.1:ENST00000679814.1:ENST00000680464.1:ENST00000681186.1:ENST00000679732.1:ENST00000681183.1:ENST00000681534.1:ENST00000681651.1:ENST00000680089.1:ENST00000680078.1:ENST00000680974.1:ENST00000680095.1:ENST00000680015.1:ENST00000681138.1:ENST00000392185.8:ENST00000679790.1:ENST00000680495.1:ENST00000679691.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	30	2	2.34087	2.544295	2.74772	0.0469761	0.0142192	0.151917	0.103638
chr8	60276799	60276899	3956857	0	-	0.52	(0.515,0.57]	chr8	362985	104	INTRON	INTRON	CA8	ENSG00000178538.10	ENST00000317995.5:ENST00000524872.5:ENST00000529918.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	30	2	2.34087	2.544295	2.74772	0.0469761	0.0142192	0.151917	0.103638
chr7	129048680	129048780	3636519	0	-	0.29	(0.28,0.32]	chr7	338148	66	INTRON	INTRON	TNPO3	ENSG00000064419.14	ENST00000627585.2:ENST00000265388.10:ENST00000471234.5:ENST00000482320.5:ENST00000471166.1	protein_coding	protein_coding	protein_coding	protein_coding	7	98	2	1.56729	2.544275	3.52126	0.0260617	0.00175369	0.133676	0.0376491
chr19	2205933	2206031	6996600	0	+	0.55102	(0.515,0.57]	chr19	693473	28	INTRON	INTRON	DOT1L	ENSG00000104885.19	ENST00000398665.8:ENST00000686010.1	protein_coding	protein_coding	protein_coding	protein_coding	7	88	2	2.38494	2.5442299999999998	2.70352	0.00164178	9.70997e-4	0.0373835	0.0283239
chr2	96633175	96633270	1181146	0	-	0.484211	(0.476,0.515]	chr2	126519	13	INTRON	INTRON	KANSL3	ENSG00000114982.19	ENST00000354204.10:ENST00000431828.6:ENST00000487070.5:ENST00000420155.5:ENST00000670907.1:ENST00000666923.1:ENST00000597150.5:ENST00000444759.5:ENST00000452268.5:ENST00000425656.5:ENST00000448075.1:ENST00000451819.5:ENST00000416138.1:ENST00000418735.1:ENST00000475820.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	12	163	2	2.22145	2.54408	2.86671	6.42814e-4	2.11053e-4	0.0229288	0.0132122
chr12	76466879	76466979	5371447	0	-	0.52	(0.515,0.57]	chr12	512479	66	INTRON	INTRON	OSBPL8	ENSG00000091039.17	ENST00000261183.8:ENST00000393249.6:ENST00000611266.4:ENST00000393250.8:ENST00000547540.5:ENST00000548341.5:ENST00000553139.5:ENST00000549570.5:ENST00000550628.5:ENST00000549646.5:ENST00000551927.5:ENST00000547544.5	protein_coding	protein_coding	protein_coding	protein_coding	2	30	2	2.52504	2.5440500000000004	2.56306	0.029342	0.0247751	0.131869	0.128055
chr14	73089370	73089470	5784396	0	+	0.54	(0.515,0.57]	chr14	547856	5	INTRON	INTRON	RBM25	ENSG00000119707.14	ENST00000527432.5:ENST00000531500.5:ENST00000261973.12:ENST00000532683.5:ENST00000525321.5:ENST00000526754.5:ENST00000528081.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	30	2	2.52504	2.5440500000000004	2.56306	0.029342	0.0247751	0.131869	0.128055
chr2	233252342	233252442	1039357	0	+	0.55	(0.515,0.57]	chr2	110864	4	SS5_PROX	SS5_PROX:INTRON	ATG16L1	ENSG00000085978.22	ENST00000431917.5:ENST00000347464.9:ENST00000444735.5:ENST00000373525.9:ENST00000392021.7:ENST00000392017.9:ENST00000419681.5:ENST00000479942.5:ENST00000485623.5:ENST00000474148.5:ENST00000417017.5:ENST00000392020.8:ENST00000392018.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	30	2	2.52504	2.5440500000000004	2.56306	0.029342	0.0247751	0.131869	0.128055
chr6	35379116	35379216	2852344	0	+	0.52	(0.515,0.57]	chr6	269491	316	INTRON	INTRON	PPARD	ENSG00000112033.14	ENST00000418635.6:ENST00000448077.6:ENST00000360694.8:ENST00000311565.4:ENST00000337400.6	protein_coding	protein_coding	protein_coding	protein_coding	2	30	2	2.52504	2.5440500000000004	2.56306	0.029342	0.0247751	0.131869	0.128055
chr9	6937803	6937903	4101963	0	+	0.52	(0.515,0.57]	chr9	373695	118	INTRON	INTRON	KDM4C	ENSG00000107077.19	ENST00000536108.5:ENST00000438023.5:ENST00000381306.7:ENST00000381309.8:ENST00000543771.5:ENST00000496464.1:ENST00000428870.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	30	2	2.52504	2.5440500000000004	2.56306	0.029342	0.0247751	0.131869	0.128055
chr18	9920410	9920510	6873405	0	+	0.53	(0.515,0.57]	chr18	680866	42	INTRON	INTRON	VAPA	ENSG00000101558.14	ENST00000400000.7:ENST00000577901.5:ENST00000340541.4:ENST00000585042.5:ENST00000578314.1:ENST00000584796.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	25	294	2	2.40215	2.5439999999999996	2.68585	2.7365e-5	2.0404e-5	0.00413983	0.00366937
chr21	10331524	10331623	7427335	0	-	0.464646	(0.44,0.476]	chr21	757671	21	INTRON	INTRON	ENSG00000277693	ENSG00000277693.2	ENST00000622592.1:ENST00000616952.1	lncRNA	lncRNA	lncRNA	lncRNA	8	107	2	1.60853	2.5438650000000003	3.4792	0.020211	1.09781e-4	0.121301	0.00942675
chr10	89710165	89710263	4484641	0	+	0.377551	(0.35,0.378]	chr10	412714	1	SS5_PROX	SS5_PROX:INTRON	KIF20B	ENSG00000138182.15	ENST00000371728.8:ENST00000260753.8:ENST00000447580.1	protein_coding	protein_coding	protein_coding	protein_coding	4	68	2	2.36677	2.54385	2.72093	0.0139343	0.00314173	0.0957526	0.0514466
chr1	109379081	109379181	520831	0	-	0.47	(0.44,0.476]	chr1	61195	91	INTRON	INTRON	SORT1	ENSG00000134243.12	ENST00000538502.5:ENST00000256637.8:ENST00000493736.5:ENST00000482236.5:ENST00000633956.1:ENST00000471996.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	144	2	2.19987	2.543775	2.88768	7.15015e-4	5.10179e-4	0.0244034	0.020816
chr14	30960495	30960594	5857213	0	-	0.383838	(0.378,0.408]	chr14	556504	39	INTRON	INTRON	STRN3	ENSG00000196792.12	ENST00000355683.9:ENST00000357479.10:ENST00000555358.5:ENST00000555152.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	78	2	2.51733	2.543775	2.57022	0.00808319	0.00179058	0.0766625	0.0392749
chrX	123603050	123603150	7877707	0	-	0.28	[0,0.28]	chrX	802388	26	UTR3	UTR3:EXON_MRNA:INTRON	THOC2	ENSG00000125676.20	ENST00000448128.5:ENST00000245838.13:ENST00000441692.5:ENST00000492203.1:ENST00000497887.5:ENST00000618150.4:ENST00000432353.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	81	2	2.22743	2.543755	2.86008	0.0177015	0.0097118	0.105304	0.0875962
chr4	110128008	110128108	2227028	0	-	0.4	(0.378,0.408]	chr4	218024	220	INTRON	INTRON	ELOVL6	ENSG00000170522.10	ENST00000394607.7:ENST00000302274.8:ENST00000514184.5:ENST00000506625.5:ENST00000506461.1:ENST00000503885.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	10	124	2	1.7981	2.543735	3.28937	0.00563164	3.2389e-4	0.0678837	0.0165891
chr2	38567698	38567793	1099411	0	-	0.347368	(0.32,0.35]	chr2	117896	1	SS5_PROX	SS5_PROX:INTRON	HNRNPLL	ENSG00000143889.16	ENST00000449105.8:ENST00000409636.5:ENST00000358367.8:ENST00000608859.5:ENST00000378915.7:ENST00000272249.7:ENST00000409328.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	40	2	2.30673	2.54373	2.78073	0.0584434	0.01481	0.167723	0.106702
chr17	36568276	36568375	6602093	0	+	0.434343	(0.408,0.44]	chr17	642571	1	INTRON	INTRON	GGNBP2	ENSG00000278311.5	ENST00000613102.5:ENST00000617860.4:ENST00000618837.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	87	2	2.04842	2.5436199999999998	3.03882	0.00797555	9.66897e-4	0.0798772	0.0282401
chrX	109733226	109733314	7861700	0	-	0.772727	(0.57,1]	chrX	801458	2	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	ACSL4	ENSG00000068366.21	ENST00000469796.7:ENST00000672401.1:ENST00000348502.10:ENST00000340800.7:ENST00000684030.1:ENST00000682031.1:ENST00000671846.1:ENST00000502391.6:ENST00000684414.1:ENST00000508092.5:ENST00000504383.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	9	68	2	2.30813	2.54358	2.77903	0.00113374	1.5244e-4	0.0308663	0.0112857
chr15	40188852	40188952	6001531	0	+	0.34	(0.32,0.35]	chr15	570623	14	INTRON	INTRON	BUB1B	ENSG00000156970.13	ENST00000412359.7:ENST00000287598.11:ENST00000559733.5:ENST00000557848.1:ENST00000559772.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	40	2	2.4458	2.543545	2.64129	0.0425977	0.0222819	0.148082	0.124303
chr6	119184614	119184714	3204157	0	-	0.34	(0.32,0.35]	chr6	298272	38	INTRON	INTRON	MAN1A1	ENSG00000111885.7	ENST00000368468.4	protein_coding	protein_coding	protein_coding	protein_coding	2	40	2	2.4458	2.543545	2.64129	0.0425977	0.0222819	0.148082	0.124303
chr1	155690742	155690842	229529	0	+	0.49	(0.476,0.515]	chr1	26994	11	INTRON	INTRON	DAP3	ENSG00000132676.16	ENST00000471642.6:ENST00000471214.5:ENST00000343043.7:ENST00000368336.10:ENST00000535183.5:ENST00000421487.6:ENST00000496863.5:ENST00000465375.5:ENST00000462002.5:ENST00000470830.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	46	2	2.26034	2.543535	2.82673	0.0166235	0.0134403	0.110511	0.0946278
chr22	47707679	47707776	7540123	0	+	0.298969	(0.28,0.32]	chr22	770713	2	INTRON	INTRON	ENSG00000224271	ENSG00000224271.7	ENST00000664761.1:ENST00000651071.1:ENST00000650683.1:ENST00000651536.1:ENST00000652499.1:ENST00000652656.1:ENST00000652072.1:ENST00000651445.1:ENST00000423737.5:ENST00000650660.1:ENST00000651056.1:ENST00000652611.1:ENST00000652399.1:ENST00000652123.1:ENST00000651311.1:ENST00000651458.1:ENST00000652505.1:ENST00000652702.2:ENST00000652334.1:ENST00000652030.2:ENST00000651403.1:ENST00000652228.1:ENST00000651124.1:ENST00000650972.1:ENST00000651985.1:ENST00000651637.1:ENST00000650924.1:ENST00000651003.1:ENST00000652168.1:ENST00000651948.2:ENST00000651293.1:ENST00000651939.1:ENST00000650787.1:ENST00000651517.1:ENST00000651662.1:ENST00000652690.1:ENST00000651638.1:ENST00000670853.1:ENST00000652750.1:ENST00000652080.1:ENST00000651294.1:ENST00000652164.1:ENST00000651538.1:ENST00000650775.1:ENST00000651983.1:ENST00000651033.1:ENST00000651584.1:ENST00000650884.1:ENST00000651270.1	lncRNA	lncRNA	lncRNA	lncRNA	2	44	2	2.46018	2.54352	2.62686	0.0375904	0.0289217	0.156054	0.1274
chr6	15342021	15342121	2823907	0	+	0.3	(0.28,0.32]	chr6	265192	271	INTRON	INTRON	JARID2	ENSG00000008083.14	ENST00000341776.7:ENST00000397311.4	protein_coding	protein_coding	protein_coding	protein_coding	2	44	2	2.46018	2.54352	2.62686	0.0375904	0.0289217	0.156054	0.1274
chr4	78810167	78810267	1981723	0	+	0.44	(0.408,0.44]	chr4	198463	331	INTRON	INTRON	BMP2K	ENSG00000138756.19	ENST00000389010.7:ENST00000502613.3:ENST00000502871.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	104	2	2.42404	2.543375	2.66271	0.00413548	4.42751e-4	0.0566868	0.0190383
chr4	82889995	82890094	2180098	0	-	0.515152	(0.476,0.515]	chr4	214408	77	INTRON	INTRON	SEC31A	ENSG00000138674.17	ENST00000395310.7:ENST00000513858.5:ENST00000348405.8:ENST00000448323.5:ENST00000311785.11:ENST00000509142.5:ENST00000443462.6:ENST00000355196.6:ENST00000508502.5:ENST00000505984.5:ENST00000508479.5:ENST00000436790.6:ENST00000503058.5:ENST00000507816.5:ENST00000514326.5:ENST00000513323.5:ENST00000511975.5:ENST00000507340.5:ENST00000507867.5:ENST00000506497.5:ENST00000510310.1:ENST00000503210.5:ENST00000505434.5:ENST00000507676.5:ENST00000506495.5:ENST00000507051.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	90	2	2.5238	2.543355	2.56291	0.00222582	0.00218334	0.0435144	0.0421176
chr20	63914579	63914678	7301154	0	+	0.545455	(0.515,0.57]	chr20	743137	56	INTRON	INTRON	DNAJC5	ENSG00000101152.11	ENST00000360864.9:ENST00000470551.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	77	2	2.3252100000000002	2.5433500000000002	2.7614899999999998	0.00525266	6.09302e-4	0.0633615	0.0223951
chr6	20425624	20425724	2827685	0	+	0.62	(0.57,1]	chr6	265575	214	INTRON	INTRON	E2F3	ENSG00000112242.16	ENST00000346618.8:ENST00000535432.2	protein_coding	protein_coding	protein_coding	protein_coding	4	31	2	2.16779	2.54334	2.91889	0.00900694	0.00719009	0.0803518	0.0756118
chr8	104495862	104495955	4013784	0	-	0.451613	(0.44,0.476]	chr8	367413	8	EXON_LNCRNA	EXON_LNCRNA:INTRON	LRP12	ENSG00000147650.12	ENST00000424843.6:ENST00000276654.10:ENST00000518375.1:ENST00000523007.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	95	2	2.17407	2.543295	2.91252	0.00272014	0.00164027	0.0481508	0.0369207
chr19	19445815	19445915	7035749	0	+	0.33	(0.32,0.35]	chr19	701448	92	INTRON	INTRON	GATAD2A	ENSG00000167491.18	ENST00000494516.6:ENST00000360315.7:ENST00000609040.5:ENST00000417582.6:ENST00000683918.1:ENST00000432704.5:ENST00000404158.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	88	2	1.99785	2.5432449999999998	3.08864	0.0215554	6.64579e-4	0.114686	0.0233423
chr10	22570836	22570935	4579054	0	-	0.363636	(0.35,0.378]	chr10	421992	14	INTRON	INTRON	PIP4K2A	ENSG00000150867.14	ENST00000376573.9:ENST00000323883.11:ENST00000545335.5:ENST00000604912.1:ENST00000422321.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	68	2	2.4077	2.54322	2.67874	0.0122026	0.00373022	0.0910127	0.0561984
chr3	38372055	38372154	1399737	0	+	0.454545	(0.44,0.476]	chr3	146824	15	INTRON	INTRON	XYLB	ENSG00000093217.11	ENST00000207870.8:ENST00000650590.1:ENST00000424034.5:ENST00000649234.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	95	2	2.02421	2.543215	3.06222	0.00536295	8.483e-4	0.0663076	0.0267232
chr21	46199556	46199656	7470570	0	-	0.36	(0.35,0.378]	chr21	761464	29	INTRON	INTRON	LSS	ENSG00000160285.15	ENST00000356396.8:ENST00000397728.8:ENST00000457828.6:ENST00000522411.5	protein_coding	protein_coding	protein_coding	protein_coding	5	82	2	2.06612	2.543195	3.02027	0.0164908	8.40802e-4	0.102419	0.0263691
chr6	26216643	26216688	3071045	0	-	0.377778	(0.35,0.378]	chr6	285451	1	UTR5	UTR5:EXON_MRNA	H2BC8	ENSG00000273802.3	ENST00000541790.4	protein_coding	protein_coding	protein_coding	protein_coding	11	178	2	2.29589	2.5431749999999997	2.79046	0.0010079	2.12609e-4	0.0292743	0.0132903
chr1	93336379	93336478	509318	0	-	0.353535	(0.35,0.378]	chr1	60007	31	INTRON	INTRON	CCDC18-AS1	ENSG00000223745.8	ENST00000413606.5:ENST00000457025.5:ENST00000451302.6:ENST00000668257.1:ENST00000455474.5:ENST00000447577.5:ENST00000429859.5:ENST00000661111.1:ENST00000450843.5:ENST00000440778.5:ENST00000659026.1:ENST00000669506.1:ENST00000657560.1:ENST00000421202.6:ENST00000436200.2:ENST00000670231.1:ENST00000432741.5:ENST00000411670.5:ENST00000452347.6	lncRNA	lncRNA	lncRNA	lncRNA	7	113	2	2.25522	2.54312	2.83102	0.00456563	5.35542e-4	0.0595107	0.0209215
chr14	102980472	102980572	5971276	0	-	0.31	(0.28,0.32]	chr14	567546	3	SS5_PROX	SS5_PROX:INTRON	CDC42BPB	ENSG00000198752.11	ENST00000361246.7	protein_coding	protein_coding	protein_coding	protein_coding	3	59	2	2.51426	2.543105	2.57195	0.0331711	0.00781326	0.133994	0.0788246
chr4	82829558	82829655	2179453	0	-	0.298969	(0.28,0.32]	chr4	214261	1	INTRON	INTRON	SEC31A	ENSG00000138674.17	ENST00000395310.7:ENST00000513858.5:ENST00000348405.8:ENST00000503937.5:ENST00000448323.5:ENST00000311785.11:ENST00000509142.5:ENST00000443462.6:ENST00000500777.6:ENST00000505472.5:ENST00000355196.6:ENST00000508502.5:ENST00000264405.9:ENST00000505984.5:ENST00000511338.1:ENST00000514362.5:ENST00000515749.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	59	2	2.51426	2.543105	2.57195	0.0331711	0.00781326	0.133994	0.0788246
chr22	21425536	21425636	7481254	0	+	0.52	(0.515,0.57]	chr22	763209	44	INTRON	INTRON	HIC2	ENSG00000169635.10	ENST00000407464.7:ENST00000407598.2	protein_coding	protein_coding	protein_coding	protein_coding	5	64	2	2.36534	2.54307	2.7208	0.00404547	0.00306828	0.0578376	0.0494933
chr6	157824142	157824241	3015770	0	+	0.434343	(0.408,0.44]	chr6	281347	3	INTRON	INTRON	SNX9	ENSG00000130340.17	ENST00000614703.4:ENST00000614800.4:ENST00000680863.1:ENST00000679814.1:ENST00000680464.1:ENST00000681186.1:ENST00000679732.1:ENST00000681183.1:ENST00000681534.1:ENST00000681651.1:ENST00000680089.1:ENST00000680078.1:ENST00000680974.1:ENST00000680095.1:ENST00000680015.1:ENST00000681138.1:ENST00000392185.8:ENST00000679790.1:ENST00000680495.1:ENST00000679691.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	47	2	2.49983	2.543035	2.58624	0.0273686	0.00713527	0.123904	0.0756118
chr2	135783478	135783577	876365	0	+	0.414141	(0.408,0.44]	chr2	98125	7	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	UBXN4	ENSG00000144224.17	ENST00000272638.14:ENST00000490163.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	15	213	2	2.2989	2.5429950000000003	2.78709	2.95812e-4	9.68791e-5	0.0153895	0.00884747
chr1	155472090	155472190	561984	0	-	0.46	(0.44,0.476]	chr1	67095	91	INTRON	INTRON	ASH1L	ENSG00000116539.14	ENST00000676814.1:ENST00000392403.8:ENST00000368346.7:ENST00000677213.1:ENST00000678117.1:ENST00000679097.1:ENST00000679333.1:ENST00000677042.1:ENST00000678699.1:ENST00000677825.1:ENST00000679133.1:ENST00000548830.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	47	2	2.5364	2.54292	2.54944	0.0309324	0.00591346	0.13151	0.0694038
chr1	28737929	28738005	58352	0	+	0.486842	(0.476,0.515]	chr1	7582	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	YTHDF2	ENSG00000198492.16	ENST00000542507.5:ENST00000474884.5:ENST00000373812.8:ENST00000541996.5:ENST00000478283.5:ENST00000496288.5:ENST00000476976.1:ENST00000475796.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	62	2	2.31726	2.542905	2.76855	0.015077	0.00244302	0.0994339	0.0456956
chr8	123073631	123073731	3850235	0	+	0.44	(0.408,0.44]	chr8	354654	2	SS5_PROX	SS5_PROX:INTRON	TBC1D31	ENSG00000156787.17	ENST00000520368.5:ENST00000519418.5:ENST00000287380.6:ENST00000522420.5:ENST00000327098.9:ENST00000518099.5:ENST00000521676.5:ENST00000524307.5:ENST00000522276.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	115	2	2.38723	2.542845	2.69846	0.00127877	9.47391e-4	0.0326395	0.0282007
chr17	27097312	27097412	6579798	0	+	0.49	(0.476,0.515]	chr17	639586	5	INTRON	INTRON	ENSG00000285822	ENSG00000285822.1	ENST00000649401.1	lncRNA	lncRNA	lncRNA	lncRNA	4	62	2	2.49941	2.54278	2.58615	0.00811651	0.00515536	0.0766625	0.0650394
chr14	103468586	103468686	5826489	0	+	0.49	(0.476,0.515]	chr14	552896	4	SS5_PROX	SS5_PROX:INTRON	MARK3	ENSG00000075413.19	ENST00000678179.1:ENST00000676838.1:ENST00000677348.1:ENST00000677404.1:ENST00000676694.1:ENST00000676938.1:ENST00000678619.1:ENST00000676897.1:ENST00000677214.1:ENST00000677942.1:ENST00000676830.1:ENST00000678999.1:ENST00000677228.1:ENST00000556744.2:ENST00000677104.1:ENST00000679330.1:ENST00000560417.6:ENST00000440884.7:ENST00000676475.1:ENST00000677035.1:ENST00000678022.1:ENST00000677560.1:ENST00000561314.6:ENST00000429436.7:ENST00000677118.1:ENST00000676564.1:ENST00000678169.1:ENST00000678175.1:ENST00000678897.1:ENST00000678278.1:ENST00000676645.1:ENST00000677829.1:ENST00000678302.1:ENST00000677133.1:ENST00000678207.1:ENST00000677360.1:ENST00000676905.1:ENST00000678343.1:ENST00000677347.1:ENST00000678071.1:ENST00000677432.1:ENST00000678237.1:ENST00000677604.1:ENST00000676518.1:ENST00000677051.1:ENST00000677857.1:ENST00000677869.1:ENST00000416682.6:ENST00000303622.13:ENST00000216288.11:ENST00000679105.1:ENST00000553942.5:ENST00000335102.9:ENST00000678091.1:ENST00000561071.5:ENST00000676745.1:ENST00000554627.5:ENST00000558953.1:ENST00000559274.1:ENST00000677410.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	35	2	2.13854	2.5427299999999997	2.94692	0.0776563	0.00794331	0.196285	0.0797304
chr4	159135596	159135696	2073825	0	+	0.48	(0.476,0.515]	chr4	205172	310	INTRON	INTRON	RAPGEF2	ENSG00000109756.10	ENST00000644474.1:ENST00000691494.1:ENST00000505478.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	35	2	2.13854	2.5427299999999997	2.94692	0.0776563	0.00794331	0.196285	0.0797304
chr7	100118481	100118567	3585529	0	-	0.488372	(0.476,0.515]	chr7	334231	2	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	TAF6:ENSG00000242798	ENSG00000106290.16:ENSG00000242798.1	ENST00000692927.1:ENST00000691370.1:ENST00000452438.7:ENST00000688343.1:ENST00000691010.1:ENST00000684938.1:ENST00000685280.1:ENST00000686172.1:ENST00000690602.1:ENST00000688640.1:ENST00000693225.1:ENST00000691681.1:ENST00000687969.1:ENST00000684951.1:ENST00000692466.1:ENST00000687410.1:ENST00000687151.1:ENST00000685713.1:ENST00000690291.1:ENST00000692175.1:ENST00000686141.1:ENST00000688091.1:ENST00000460673.3:ENST00000686777.1:ENST00000687672.1:ENST00000689866.1:ENST00000689754.1:ENST00000687447.1:ENST00000692408.1:ENST00000690206.1:ENST00000688086.1:ENST00000690367.1:ENST00000688962.1:ENST00000687216.1:ENST00000691413.1:ENST00000686580.1:ENST00000686096.1:ENST00000689284.1:ENST00000689684.1:ENST00000688498.1:ENST00000421980.5:ENST00000453269.7:ENST00000452041.5:ENST00000344095.8:ENST00000493322.6:ENST00000523306.6:ENST00000687768.1:ENST00000685258.1:ENST00000690962.1:ENST00000689536.1:ENST00000440225.6:ENST00000691534.1:ENST00000451699.6:ENST00000692029.1:ENST00000487288.2:ENST00000685054.1:ENST00000437822.6:ENST00000687641.1:ENST00000449571.5:ENST00000417349.5:ENST00000520135.6:ENST00000431404.2:ENST00000494221.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA	2	35	2	2.13854	2.5427299999999997	2.94692	0.0776563	0.00794331	0.196285	0.0797304
chr6	57049975	57050074	2877961	0	+	0.414141	(0.408,0.44]	chr6	273197	22	INTRON	INTRON	KIAA1586	ENSG00000168116.14	ENST00000545356.5:ENST00000370733.5:ENST00000488682.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	86	2	2.22819	2.54271	2.85723	0.00373083	0.00211413	0.0561984	0.0415897
chr1	226974061	226974160	328904	0	+	0.545455	(0.515,0.57]	chr1	37923	80	INTRON	INTRON	COQ8A	ENSG00000163050.18	ENST00000366778.5:ENST00000366777.4:ENST00000478406.5:ENST00000489044.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	48	2	2.11724	2.54269	2.96814	0.0110335	0.00756432	0.0927187	0.0749063
chr7	5209919	5210019	3272159	0	+	0.56	(0.515,0.57]	chr7	304097	99	INTRON	INTRON	WIPI2	ENSG00000157954.15	ENST00000401525.7:ENST00000288828.9:ENST00000404704.7:ENST00000466014.5:ENST00000485854.5:ENST00000382384.6:ENST00000496867.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	61	2	1.54678	2.54261	3.53844	0.0324987	7.92613e-4	0.145164	0.0259663
chr11	63899203	63899299	4801483	0	+	0.395833	(0.378,0.408]	chr11	445082	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	MARK2	ENSG00000072518.22	ENST00000377810.8:ENST00000361128.9:ENST00000508192.5:ENST00000350490.11:ENST00000402010.8:ENST00000502399.7:ENST00000425897.3:ENST00000679216.1:ENST00000513765.7:ENST00000543220.5:ENST00000677688.1:ENST00000509502.6:ENST00000408948.7:ENST00000679213.1:ENST00000676602.1:ENST00000678482.1:ENST00000678662.1:ENST00000679321.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	48	2	2.35527	2.5426	2.72993	0.0188736	0.0121511	0.108861	0.0963966
chr3	100743751	100743849	1468290	0	+	0.408163	(0.378,0.408]	chr3	153890	14	EXON_MRNA	EXON_MRNA:INTRON	TFG	ENSG00000114354.15	ENST00000675047.1:ENST00000490574.6:ENST00000675543.1:ENST00000676308.1:ENST00000675499.1:ENST00000674699.1:ENST00000418917.7:ENST00000675553.1:ENST00000620299.5:ENST00000675246.1:ENST00000675692.1:ENST00000676276.1:ENST00000676054.1:ENST00000675890.1:ENST00000675011.1:ENST00000675586.1:ENST00000674645.1:ENST00000675958.1:ENST00000674798.1:ENST00000676010.1:ENST00000675591.1:ENST00000675420.1:ENST00000674615.1:ENST00000676431.1:ENST00000674758.1:ENST00000240851.9:ENST00000675243.1:ENST00000676111.1:ENST00000476228.5:ENST00000463568.6:ENST00000676395.1:ENST00000487505.6:ENST00000615993.2:ENST00000676455.1:ENST00000481203.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	48	2	2.35527	2.5426	2.72993	0.0188736	0.0121511	0.108861	0.0963966
chr18	796107	796206	6940544	0	-	0.343434	(0.32,0.35]	chr18	686525	78	INTRON	INTRON	YES1	ENSG00000176105.14	ENST00000584307.5:ENST00000314574.5:ENST00000577611.1:ENST00000581960.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	54	2	2.45306	2.54258	2.6321	0.0268	0.00916394	0.123349	0.0855292
chr5	73503836	73503936	2389604	0	+	0.34	(0.32,0.35]	chr5	230679	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	BTF3	ENSG00000145741.17	ENST00000676862.1:ENST00000335895.12:ENST00000678135.1:ENST00000380591.8:ENST00000514360.5:ENST00000679077.1:ENST00000677654.1:ENST00000508901.1:ENST00000507081.6:ENST00000676856.1:ENST00000514505.7:ENST00000509708.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	54	2	2.45306	2.54258	2.6321	0.0268	0.00916394	0.123349	0.0855292
chr1	172554069	172554169	254899	0	+	0.29	(0.28,0.32]	chr1	30368	3	INTRON	INTRON	SUCO	ENSG00000094975.14	ENST00000367723.8:ENST00000608151.5:ENST00000616058.4:ENST00000263688.4:ENST00000610051.5:ENST00000608804.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	117	2	2.09145	2.5425750000000003	2.9937	0.0172565	3.00958e-4	0.104099	0.0155054
chr8	90447130	90447230	3794571	0	+	0.37	(0.35,0.378]	chr8	351804	159	INTRON	INTRON	LINC00534	ENSG00000253394.7	ENST00000655523.1:ENST00000658299.1:ENST00000663329.1:ENST00000658342.1:ENST00000655219.1:ENST00000662692.1:ENST00000667296.1:ENST00000667565.1:ENST00000653734.1:ENST00000654785.1:ENST00000524361.5:ENST00000668745.1:ENST00000671657.1:ENST00000655123.1:ENST00000670903.1	lncRNA	lncRNA	lncRNA	lncRNA	3	51	2	2.09331	2.5425199999999997	2.99173	0.0315717	0.00713365	0.13151	0.0756118
chr4	3180883	3180972	1918161	0	+	0.550562	(0.515,0.57]	chr4	192698	2	SS5_PROX	SS5_PROX:INTRON	HTT	ENSG00000197386.14	ENST00000680956.1:ENST00000680360.1:ENST00000681528.1:ENST00000680239.1:ENST00000355072.11:ENST00000680291.1:ENST00000510626.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	48	2	1.88259	2.5424949999999997	3.2024	0.0251849	0.00322022	0.133519	0.0507087
chr7	74702212	74702310	3335699	0	+	0.397959	(0.378,0.408]	chr7	310373	12	INTRON	INTRON	GTF2I	ENSG00000263001.8	ENST00000650807.1:ENST00000690345.1:ENST00000573035.6:ENST00000614986.4:ENST00000620879.4:ENST00000621734.4:ENST00000443166.5	protein_coding	protein_coding	protein_coding	protein_coding	3	48	2	2.23831	2.54247	2.84663	0.0179575	0.0133954	0.114265	0.0946278
chr7	140476434	140476534	3661606	0	-	0.39	(0.378,0.408]	chr7	339948	7	INTRON	INTRON	MKRN1	ENSG00000133606.11	ENST00000255977.7:ENST00000475010.5:ENST00000495305.5:ENST00000474576.5:ENST00000480552.5:ENST00000496169.5:ENST00000443720.6:ENST00000471104.5:ENST00000467513.5:ENST00000494939.1:ENST00000498535.1:ENST00000473444.1:ENST00000475180.5:ENST00000481705.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	48	2	2.23831	2.54247	2.84663	0.0179575	0.0133954	0.114265	0.0946278
chr17	57454731	57454830	6634743	0	+	0.484848	(0.476,0.515]	chr17	648057	96	INTRON	INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000674961.1:ENST00000582453.5:ENST00000675656.1:ENST00000322684.7:ENST00000442934.6:ENST00000579180.2:ENST00000579205.5:ENST00000579505.5:ENST00000582772.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	48	2	1.8388	2.54238	3.24596	0.0564473	0.00322919	0.184423	0.0507087
chr15	83038027	83038127	6249145	0	-	0.46	(0.44,0.476]	chr15	596398	73	INTRON	INTRON	BTBD1	ENSG00000064726.10	ENST00000261721.9:ENST00000379403.2:ENST00000559652.5:ENST00000560015.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	47	2	2.00609	2.5423549999999997	3.07862	0.0360127	0.0060153	0.152355	0.0674604
chr19	330480	330580	7109470	0	-	0.46	(0.44,0.476]	chr19	713814	1	SS3_PROX	SS3_PROX:INTRON	MIER2	ENSG00000105556.12	ENST00000264819.7:ENST00000635755.1:ENST00000586994.7:ENST00000621180.4:ENST00000592722.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	47	2	2.00609	2.5423549999999997	3.07862	0.0360127	0.0060153	0.152355	0.0674604
chr7	102652780	102652880	3589048	0	-	0.47	(0.44,0.476]	chr7	335089	101	INTRON	INTRON	ENSG00000267645	ENSG00000267645.5	ENST00000476151.5	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	22	311	2	2.19455	2.5423549999999997	2.89016	2.23629e-4	1.41472e-5	0.0131578	0.00299745
chr5	171397761	171397860	2546669	0	+	0.434343	(0.408,0.44]	chr5	243099	44	INTRON	INTRON	NPM1	ENSG00000181163.14	ENST00000517671.5:ENST00000676613.1:ENST00000678186.1:ENST00000678267.1:ENST00000677297.1:ENST00000521672.6:ENST00000679190.1:ENST00000677467.1:ENST00000678280.1:ENST00000676625.1:ENST00000679006.1:ENST00000351986.10:ENST00000676504.1:ENST00000676589.1:ENST00000677357.1:ENST00000679233.1:ENST00000296930.10:ENST00000393820.2:ENST00000521260.2:ENST00000518587.2:ENST00000678774.1:ENST00000677600.1:ENST00000677741.1:ENST00000677325.1:ENST00000677672.1:ENST00000677907.1:ENST00000677904.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	14	186	2	1.91998	2.54231	3.16464	0.00273871	2.26292e-5	0.0468915	0.00371897
chr19	11611237	11611337	7018156	0	+	0.37	(0.35,0.378]	chr19	697694	65	INTRON	INTRON	ZNF627	ENSG00000198551.10	ENST00000585493.5:ENST00000587939.5:ENST00000361113.10:ENST00000588174.1	protein_coding	protein_coding	protein_coding	protein_coding	2	39	2	2.30249	2.542305	2.78212	0.0519726	0.0168532	0.176696	0.103549
chr7	73173216	73173316	3331191	0	+	0.51	(0.476,0.515]	chr7	309730	175	INTRON	INTRON	GTF2IP4	ENSG00000233369.7	ENST00000544802.5	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	3	46	2	2.32001	2.542305	2.7646	0.0162075	0.0136217	0.101682	0.101453
chr1	37876510	37876608	425459	0	-	0.408163	(0.378,0.408]	chr1	51568	4	INTRON	INTRON	INPP5B	ENSG00000204084.13	ENST00000373023.6:ENST00000373024.8:ENST00000458109.6:ENST00000373027.5:ENST00000373026.5	protein_coding	protein_coding	protein_coding	protein_coding	2	36	2	2.2259	2.5422200000000004	2.85854	0.0662381	0.0107837	0.181924	0.0920575
chr1	100906051	100906151	174437	0	+	0.38	(0.378,0.408]	chr1	18928	90	INTRON	INTRON	SLC30A7	ENSG00000162695.12	ENST00000370112.8:ENST00000357650.9	protein_coding	protein_coding	protein_coding	protein_coding	2	36	2	2.2259	2.5422200000000004	2.85854	0.0662381	0.0107837	0.181924	0.0920575
chr10	28615573	28615672	4414645	0	+	0.393939	(0.378,0.408]	chr10	407198	1	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	WAC	ENSG00000095787.24	ENST00000680735.1:ENST00000375664.8:ENST00000628285.3:ENST00000681112.1:ENST00000679570.1:ENST00000375646.5:ENST00000354911.9:ENST00000347934.8:ENST00000420266.6:ENST00000679398.1:ENST00000442148.6:ENST00000414108.6:ENST00000679428.1:ENST00000439676.5:ENST00000345541.6:ENST00000480474.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	36	2	2.2259	2.5422200000000004	2.85854	0.0662381	0.0107837	0.181924	0.0920575
chr17	62543530	62543630	6653535	0	+	0.39	(0.378,0.408]	chr17	649352	68	INTRON	INTRON	TLK2	ENSG00000146872.19	ENST00000582809.5:ENST00000684213.1:ENST00000583843.5:ENST00000582195.6:ENST00000682085.1:ENST00000580705.5:ENST00000346027.10:ENST00000326270.13:ENST00000682203.1:ENST00000343388.11:ENST00000683536.1:ENST00000684440.1:ENST00000684772.1:ENST00000682274.1:ENST00000682827.1:ENST00000682075.1:ENST00000683104.1:ENST00000684012.1:ENST00000581041.5:ENST00000684553.1:ENST00000683737.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	36	2	2.2259	2.5422200000000004	2.85854	0.0662381	0.0107837	0.181924	0.0920575
chr8	140630617	140630716	4076517	0	-	0.40404	(0.378,0.408]	chr8	370289	34	INTRON	INTRON	AGO2	ENSG00000123908.12	ENST00000220592.10:ENST00000519980.5:ENST00000523609.5:ENST00000517293.5:ENST00000518019.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	36	2	2.2259	2.5422200000000004	2.85854	0.0662381	0.0107837	0.181924	0.0920575
chr11	496607	496703	4888764	0	-	0.479167	(0.476,0.515]	chr11	457575	12	INTRON	INTRON	RNH1	ENSG00000023191.17	ENST00000534797.5:ENST00000397614.5:ENST00000397604.7:ENST00000354420.7:ENST00000397615.6:ENST00000525522.5:ENST00000525701.5:ENST00000529768.5:ENST00000533410.5:ENST00000438658.6:ENST00000356187.9:ENST00000524464.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	46	2	2.19809	2.542195	2.8863	0.020317	0.0111679	0.121522	0.0877435
chr3	9995728	9995828	1362059	0	+	0.48	(0.476,0.515]	chr3	143402	15	INTRON	INTRON	EMC3-AS1	ENSG00000180385.9	ENST00000692142.1:ENST00000366264.6:ENST00000693066.1:ENST00000326237.3:ENST00000440568.1:ENST00000424904.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	3	46	2	2.19809	2.542195	2.8863	0.020317	0.0111679	0.121522	0.0877435
chr7	75736000	75736100	3561222	0	-	0.4	(0.378,0.408]	chr7	331788	18	INTRON	INTRON	HIP1	ENSG00000127946.17	ENST00000336926.11:ENST00000434438.6:ENST00000485723.1:ENST00000479835.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	67	2	1.48005	2.54217	3.60429	0.0596711	5.71664e-4	0.168954	0.0217398
chr2	3447038	3447136	686423	0	+	0.479592	(0.476,0.515]	chr2	80501	28	INTRON	INTRON	TRAPPC12	ENSG00000171853.16	ENST00000382110.6:ENST00000324266.10:ENST00000441983.5:ENST00000417243.5:ENST00000469147.5:ENST00000441099.5:ENST00000433382.5:ENST00000462983.5:ENST00000479897.5:ENST00000415624.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	64	2	1.58842	2.542145	3.49587	0.0406588	0.00120011	0.161534	0.0315806
chr16	46619867	46619967	6478105	0	-	0.51	(0.476,0.515]	chr16	626611	11	INTRON	INTRON	SHCBP1	ENSG00000171241.9	ENST00000303383.8:ENST00000566016.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	35	2	2.38442	2.542045	2.69967	0.0417472	0.0195838	0.161736	0.109483
chr7	138497790	138497890	3435016	0	+	0.5	(0.476,0.515]	chr7	319959	361	INTRON	INTRON	TRIM24	ENSG00000122779.18	ENST00000343526.9:ENST00000415680.6:ENST00000497516.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	35	2	2.38442	2.542045	2.69967	0.0417472	0.0195838	0.161736	0.109483
chr9	122820919	122821019	4337914	0	-	0.48	(0.476,0.515]	chr9	398660	1	SS3_PROX	SS3_PROX:INTRON	PDCL	ENSG00000136940.14	ENST00000436632.5:ENST00000259467.9:ENST00000394285.3	protein_coding	protein_coding	protein_coding	protein_coding	2	35	2	2.38442	2.542045	2.69967	0.0417472	0.0195838	0.161736	0.109483
chr22	19416652	19416751	7554274	0	-	0.242424	[0,0.28]	chr22	772317	55	INTRON	INTRON	HIRA:C22orf39	ENSG00000100084.14:ENSG00000242259.9	ENST00000263208.5:ENST00000340170.8:ENST00000509549.5:ENST00000464189.5:ENST00000452818.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	92	2	1.90035	2.5419650000000003	3.18358	0.0173564	0.00694532	0.112318	0.0718189
chr9	112050155	112050255	4315512	0	-	0.4	(0.378,0.408]	chr9	396891	76	INTRON	INTRON	SUSD1	ENSG00000106868.17	ENST00000374270.8:ENST00000374263.7:ENST00000355396.7:ENST00000374264.6:ENST00000475283.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	107	2	2.49361	2.54193	2.59025	0.00217503	0.00109695	0.0417893	0.0303708
chr21	43869845	43869945	7413836	0	+	0.44	(0.408,0.44]	chr21	755688	21	INTRON	INTRON	AGPAT3	ENSG00000160216.21	ENST00000291572.13:ENST00000448287.5	protein_coding	protein_coding	protein_coding	protein_coding	5	78	2	2.48326	2.5418700000000003	2.60048	0.00484324	0.00324772	0.0640618	0.0508595
chr1	229538657	229538756	653566	0	-	0.393939	(0.378,0.408]	chr1	77458	36	INTRON	INTRON	ABCB10	ENSG00000135776.5	ENST00000344517.5	protein_coding	protein_coding	protein_coding	protein_coding	2	36	2	2.53503	2.54176	2.54849	0.0319942	0.0273196	0.136494	0.13174
chr22	20005467	20005567	7556713	0	-	0.38	(0.378,0.408]	chr22	772675	143	INTRON	INTRON	ARVCF	ENSG00000099889.14	ENST00000263207.8:ENST00000467828.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	36	2	2.53503	2.54176	2.54849	0.0319942	0.0273196	0.136494	0.13174
chr5	32389574	32389674	2598765	0	-	0.4	(0.378,0.408]	chr5	246906	5	INTRON	INTRON	ZFR	ENSG00000056097.16	ENST00000265069.13:ENST00000507465.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	36	2	2.53503	2.54176	2.54849	0.0319942	0.0273196	0.136494	0.13174
chr5	146166249	146166348	2747246	0	-	0.383838	(0.378,0.408]	chr5	258874	14	INTRON	INTRON	LARS1	ENSG00000133706.19	ENST00000674174.1:ENST00000674170.1:ENST00000674479.1:ENST00000674309.1:ENST00000674218.1:ENST00000674467.1:ENST00000674290.1:ENST00000674447.1:ENST00000674270.1:ENST00000674383.1:ENST00000674191.1:ENST00000674158.1:ENST00000394434.7:ENST00000674398.1:ENST00000674277.1:ENST00000274562.13:ENST00000510191.5:ENST00000674310.1:ENST00000512412.2:ENST00000674417.1:ENST00000674450.1:ENST00000674412.1:ENST00000618084.2:ENST00000511505.5:ENST00000505223.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	36	2	2.53503	2.54176	2.54849	0.0319942	0.0273196	0.136494	0.13174
chr7	40059279	40059379	3311723	0	+	0.4	(0.378,0.408]	chr7	307520	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	CDK13	ENSG00000065883.17	ENST00000340829.10:ENST00000181839.10:ENST00000613626.4:ENST00000646039.1:ENST00000643859.1:ENST00000484589.2:ENST00000643915.1:ENST00000645470.1:ENST00000642592.1:ENST00000478563.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	36	2	2.53503	2.54176	2.54849	0.0319942	0.0273196	0.136494	0.13174
chr8	102842660	102842757	4013019	0	-	0.402062	(0.378,0.408]	chr8	367320	25	INTRON	INTRON	AZIN1	ENSG00000155096.15	ENST00000681985.1:ENST00000684566.1:ENST00000682725.1:ENST00000337198.10:ENST00000684459.1:ENST00000683787.1:ENST00000682014.1:ENST00000682969.1:ENST00000684721.1:ENST00000683965.1:ENST00000347770.8:ENST00000521536.6:ENST00000520402.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	36	2	2.53503	2.54176	2.54849	0.0319942	0.0273196	0.136494	0.13174
chr12	32737764	32737864	5110357	0	+	0.33	(0.32,0.35]	chr12	482535	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	DNM1L	ENSG00000087470.19	ENST00000414834.6:ENST00000452533.6:ENST00000358214.9:ENST00000553257.6:ENST00000549701.6:ENST00000266481.10:ENST00000546649.5:ENST00000547312.5:ENST00000381000.8:ENST00000546757.5:ENST00000550093.5:ENST00000547078.5:ENST00000552743.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	74	2	1.80487	2.541725	3.27858	0.0210603	0.00368368	0.122559	0.0535094
chr12	93402965	93403065	5189197	0	+	0.34	(0.32,0.35]	chr12	490816	37	UTR3	UTR3:EXON_MRNA	NUDT4	ENSG00000173598.14	ENST00000337179.9:ENST00000415493.7	protein_coding	protein_coding	protein_coding	protein_coding	5	74	2	1.80487	2.541725	3.27858	0.0210603	0.00368368	0.122559	0.0535094
chr1	26722213	26722313	51433	0	+	0.41	(0.408,0.44]	chr1	6542	243	INTRON	INTRON	ARID1A	ENSG00000117713.21	ENST00000430799.7:ENST00000324856.13:ENST00000637465.1:ENST00000457599.6	protein_coding	protein_coding	protein_coding	protein_coding	7	96	2	1.96132	2.541515	3.12171	0.00701866	6.63666e-4	0.0754576	0.0234815
chr21	33544252	33544350	7397435	0	+	0.346939	(0.32,0.35]	chr21	753504	7	INTRON	INTRON	SON	ENSG00000159140.22	ENST00000356577.10:ENST00000381692.6:ENST00000475072.1:ENST00000695559.1:ENST00000455528.5:ENST00000300278.8:ENST00000381679.8:ENST00000492229.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	100	2	2.24224	2.5415	2.84076	0.00393422	0.0027933	0.0572563	0.0469265
chr20	5100219	5100314	7311389	0	-	0.305263	(0.28,0.32]	chr20	744433	5	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	TMEM230	ENSG00000089063.15	ENST00000615008.4:ENST00000612323.4:ENST00000202834.11:ENST00000379283.6:ENST00000379279.6:ENST00000379299.6:ENST00000379286.6:ENST00000492419.1:ENST00000379277.6:ENST00000342308.10	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	72	2	1.71442	2.5414849999999998	3.36855	0.0454351	0.00305882	0.164236	0.0494118
chr5	90696436	90696536	2421810	0	+	0.36	(0.35,0.378]	chr5	232960	1	SS3_PROX	SS3_PROX:INTRON	ADGRV1	ENSG00000164199.18	ENST00000405460.9:ENST00000640403.1:ENST00000639473.1:ENST00000639431.1:ENST00000640779.1:ENST00000640012.1:ENST00000640374.1:ENST00000509621.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	51	2	2.53856	2.541385	2.54421	0.0326077	0.00630238	0.133687	0.0722266
chr16	18118972	18119072	6453823	0	-	0.51	(0.476,0.515]	chr16	621960	1152	INTRON	INTRON	ENSG00000259929:ENSG00000260242	ENSG00000259929.5:ENSG00000260242.1	ENST00000567304.1:ENST00000563866.1	lncRNA	lncRNA	lncRNA	lncRNA	6	85	2	2.14389	2.54124	2.93859	0.00540862	0.00143107	0.066545000000000007	0.0340925
chr16	21900278	21900373	6462272	0	-	0.484211	(0.476,0.515]	chr16	623555	8	INTRON	INTRON	SMG1P4	ENSG00000185710.9	ENST00000523028.5	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	6	85	2	2.14389	2.54124	2.93859	0.00540862	0.00143107	0.066545000000000007	0.0340925
chr5	87366959	87367059	2668451	0	-	0.48	(0.476,0.515]	chr5	252550	477	INTRON	INTRON	CCNH	ENSG00000134480.16	ENST00000645953.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	14	203	2	2.5355	2.5410500000000003	2.5466	2.291e-4	1.61877e-4	0.0133403	0.0116382
chr21	46204438	46204537	7470619	0	-	0.474747	(0.44,0.476]	chr21	761464	78	INTRON	INTRON	LSS	ENSG00000160285.15	ENST00000356396.8:ENST00000397728.8:ENST00000457828.6:ENST00000522411.5	protein_coding	protein_coding	protein_coding	protein_coding	7	97	2	1.78423	2.5410399999999997	3.29785	0.0143065	2.77287e-4	0.104058	0.0152764
chr15	84715824	84715924	6252026	0	-	0.54	(0.515,0.57]	chr15	596690	4	SS5_PROX	SS5_PROX:INTRON	SEC11A	ENSG00000140612.14	ENST00000559729.5:ENST00000268220.12:ENST00000560266.5:ENST00000558134.5:ENST00000558217.5:ENST00000455959.7:ENST00000560409.5:ENST00000558196.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	64	2	2.31902	2.54101	2.763	0.00493032	0.00257143	0.0646039	0.045134
chr12	11118911	11119011	5268984	0	-	0.48	(0.476,0.515]	chr12	502251	568	INTRON	INTRON	ENSG00000275778:PRH1	ENSG00000275778.2:ENSG00000231887.8	ENST00000536668.2:ENST00000535024.6:ENST00000541977.5:ENST00000546265.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	75	2	2.20789	2.540975	2.87406	0.00820497	0.00188729	0.081115	0.0391691
chr17	82582040	82582140	6693235	0	+	0.29	(0.28,0.32]	chr17	654652	98	INTRON	INTRON	FOXK2	ENSG00000141568.21	ENST00000473637.6:ENST00000335255.10:ENST00000531030.5:ENST00000526383.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	80	2	2.51426	2.5409550000000003	2.56765	0.00835086	0.00781326	0.0788246	0.0774402
chr10	130178446	130178545	4536759	0	+	0.525253	(0.515,0.57]	chr10	418830	30	INTRON	INTRON	GLRX3	ENSG00000108010.12	ENST00000331244.10:ENST00000481034.1:ENST00000368644.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	40	2	2.39351	2.54092	2.68833	0.0184931	0.0100431	0.108861	0.0881096
chr7	130169100	130169200	3638381	0	-	0.53	(0.515,0.57]	chr7	338345	22	INTRON	INTRON	TMEM209	ENSG00000146842.17	ENST00000397622.7:ENST00000473456.5:ENST00000462753.5	protein_coding	protein_coding	protein_coding	protein_coding	3	40	2	2.39351	2.54092	2.68833	0.0184931	0.0100431	0.108861	0.0881096
chr16	16502518	16502618	6310887	0	+	0.32	(0.28,0.32]	chr16	604098	25	INTRON	INTRON	ENSG00000260126	ENSG00000260126.2	ENST00000567465.2	lncRNA	lncRNA	lncRNA	lncRNA	3	60	2	2.22069	2.5409100000000002	2.86113	0.0243177	0.0122675	0.12011	0.0969406
chr22	23203249	23203349	7483434	0	+	0.47	(0.44,0.476]	chr22	763541	35	INTRON	INTRON	BCR	ENSG00000186716.21	ENST00000479188.5:ENST00000359540.7:ENST00000305877.13:ENST00000463770.5:ENST00000487679.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	115	2	2.19954	2.5408999999999997	2.88226	0.00305209	3.71378e-4	0.0493883	0.0173619
chr1	32845531	32845628	66852	0	+	0.371134	(0.35,0.378]	chr1	8573	25	INTRON	INTRON	S100PBP	ENSG00000116497.18	ENST00000373476.5:ENST00000373475.10	protein_coding	protein_coding	protein_coding	protein_coding	3	51	2	2.04358	2.54086	3.03814	0.0329533	0.00767003	0.145171	0.075364
chr8	29052479	29052578	3726496	0	+	0.232323	[0,0.28]	chr8	346333	10	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	HMBOX1	ENSG00000147421.18	ENST00000287701.15:ENST00000397358.7:ENST00000522468.1:ENST00000561377.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	110	2	2.28786	2.540745	2.79363	0.00782185	0.00466792	0.0788675	0.0600108
chr16	88603542	88603642	6418597	0	+	0.52	(0.515,0.57]	chr16	615820	32	INTRON	INTRON	ZC3H18	ENSG00000158545.16	ENST00000301011.10:ENST00000452588.6:ENST00000567085.1:ENST00000568072.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	49	2	1.67758	2.54073	3.40388	0.0471728	0.00142538	0.168737	0.0340865
chrX	123610699	123610793	7877785	0	-	0.319149	(0.28,0.32]	chrX	802395	4	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	THOC2	ENSG00000125676.20	ENST00000448128.5:ENST00000245838.13:ENST00000441692.5:ENST00000492203.1:ENST00000497887.5:ENST00000618150.4:ENST00000432353.5:ENST00000455053.5:ENST00000355725.8:ENST00000416618.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	59	2	1.81582	2.5406649999999997	3.26551	0.068122	0.0030714	0.184298	0.0509893
chr1	51618020	51618120	99401	0	+	0.55	(0.515,0.57]	chr1	13244	4	INTRON	INTRON	OSBPL9	ENSG00000117859.19	ENST00000371714.5:ENST00000428468.6:ENST00000447887.5:ENST00000495776.5:ENST00000435274.6:ENST00000453295.5:ENST00000489990.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	40	2	2.11313	2.540635	2.96814	0.0256725	0.00756432	0.133676	0.0749063
chr21	46419595	46419693	7422211	0	+	0.520408	(0.515,0.57]	chr21	756880	9	INTRON	INTRON	PCNT	ENSG00000160299.18	ENST00000695558.1:ENST00000359568.10:ENST00000480896.5:ENST00000695527.1:ENST00000695528.1:ENST00000695529.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	40	2	2.11313	2.540635	2.96814	0.0256725	0.00756432	0.133676	0.0749063
chr7	149013052	149013149	3670891	0	-	0.556701	(0.515,0.57]	chr7	340676	3	INTRON	INTRON	PDIA4	ENSG00000155660.11	ENST00000652332.1:ENST00000286091.9	protein_coding	protein_coding	protein_coding	protein_coding	3	40	2	2.11313	2.540635	2.96814	0.0256725	0.00756432	0.133676	0.0749063
chr13	52507918	52508018	5504474	0	+	0.46	(0.44,0.476]	chr13	526725	32	INTRON	INTRON	TPTE2P3	ENSG00000244471.6	ENST00000418237.6:ENST00000441562.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	3	47	2	2.19078	2.5406250000000004	2.89047	0.0226089	0.00955699	0.117489	0.0863913
chr6	16268416	16268516	2826274	0	+	0.46	(0.44,0.476]	chr6	265366	99	INTRON	INTRON	GMPR	ENSG00000137198.10	ENST00000259727.5:ENST00000543191.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	47	2	2.19078	2.5406250000000004	2.89047	0.0226089	0.00955699	0.117489	0.0863913
chr7	72980117	72980217	3553916	0	-	0.51	(0.476,0.515]	chr7	330643	1	SS3_PROX	SS3_PROX:INTRON	STAG3L3	ENSG00000174353.17	ENST00000436857.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	9	112	2	1.69492	2.54059	3.38626	0.0127656	1.1754e-4	0.0926667	0.00930356
chr20	57399227	57399327	7288849	0	+	0.56	(0.515,0.57]	chr20	741605	55	INTRON	INTRON	RBM38	ENSG00000132819.17	ENST00000356208.10:ENST00000440234.6:ENST00000342690.4:ENST00000344785.10:ENST00000371219.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	73	2	2.27709	2.540545	2.804	0.00275782	0.00215855	0.0486216	0.0417866
chr2	61384629	61384728	1129685	0	-	0.353535	(0.35,0.378]	chr2	121474	9	INTRON	INTRON	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000453133.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	145	2	1.97395	2.54052	3.10709	0.00872531	3.91305e-5	0.0788605	0.00505936
chr2	240013221	240013320	1345608	0	-	0.292929	(0.28,0.32]	chr2	141095	8	UTR3	UTR3:EXON_MRNA:INTRON	NDUFA10	ENSG00000130414.13	ENST00000679183.1:ENST00000677057.1:ENST00000676782.1:ENST00000677407.1:ENST00000676929.1:ENST00000678455.1:ENST00000252711.7:ENST00000677692.1:ENST00000476216.6:ENST00000677395.1:ENST00000678188.1:ENST00000677979.1:ENST00000678914.1:ENST00000678562.1:ENST00000678832.1:ENST00000677155.1:ENST00000677764.1:ENST00000677294.1:ENST00000678468.1:ENST00000678158.1:ENST00000676491.1:ENST00000677114.1:ENST00000404554.5:ENST00000620965.5:ENST00000485344.6:ENST00000679308.1:ENST00000677567.1:ENST00000679158.1:ENST00000443626.5:ENST00000444548.6:ENST00000448880.6:ENST00000677490.1:ENST00000307300.8:ENST00000678898.1:ENST00000677368.1:ENST00000677263.1:ENST00000678289.1:ENST00000676784.1:ENST00000414580.2:ENST00000679332.1:ENST00000678737.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	109	2	2.25951	2.5405100000000003	2.82151	0.00397414	0.00341865	0.0577209	0.0517761
chrX	134771550	134771648	7893238	0	-	0.397959	(0.378,0.408]	chrX	803513	3	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PABIR2	ENSG00000156504.17	ENST00000343004.10:ENST00000370790.5:ENST00000298090.10:ENST00000478384.5:ENST00000486347.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	132	2	1.53914	2.540505	3.54187	0.014213	9.09909e-5	0.103638	0.00848955
chr6	38684173	38684273	3090087	0	-	0.28	[0,0.28]	chr6	289116	4	SS5_PROX	SS5_PROX:INTRON	GLO1	ENSG00000124767.7	ENST00000373365.5	protein_coding	protein_coding	protein_coding	protein_coding	2	50	2	2.43761	2.54035	2.64309	0.0423864	0.0308646	0.161744	0.13151
chr3	25741049	25741148	1642412	0	-	0.434343	(0.408,0.44]	chr3	168658	2	INTRON	INTRON	NGLY1	ENSG00000151092.18	ENST00000280700.10:ENST00000428257.5:ENST00000675217.1:ENST00000676225.1:ENST00000493324.5:ENST00000396649.7:ENST00000675178.1:ENST00000675680.1:ENST00000308710.9:ENST00000280699.13:ENST00000674841.1:ENST00000675234.1:ENST00000463611.2:ENST00000417874.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	104	2	2.35743	2.54033	2.72323	0.00206746	0.00114246	0.0421756	0.0307966
chr3	138765653	138765753	1830806	0	-	0.43	(0.408,0.44]	chr3	184051	59	INTRON	INTRON	PIK3CB	ENSG00000051382.9	ENST00000674063.1:ENST00000477593.5:ENST00000462898.5:ENST00000483968.5:ENST00000465581.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	76	2	2.29777	2.54033	2.78289	0.0067764	0.0022785	0.0711802	0.0437013
chr17	50751026	50751116	6627309	0	+	0.322222	(0.32,0.35]	chr17	647264	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	LUC7L3	ENSG00000108848.16	ENST00000393227.6:ENST00000505658.6:ENST00000240304.5:ENST00000511974.5:ENST00000513969.5:ENST00000503728.1:ENST00000503798.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	40	663	2	2.0317	2.540295	3.04889	7.20263e-4	4.34113e-7	0.024652	3.44945e-4
chr12	132098005	132098105	5250324	0	+	0.33	(0.32,0.35]	chr12	499298	61	INTRON	INTRON	EP400P1	ENSG00000185684.16	ENST00000407361.8:ENST00000446190.5:ENST00000690966.1:ENST00000689047.1:ENST00000454179.7:ENST00000689533.1:ENST00000688036.1:ENST00000688136.1:ENST00000488030.5:ENST00000389560.6:ENST00000689403.1:ENST00000443539.6:ENST00000392352.5:ENST00000539205.5:ENST00000332441.7	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	5	74	2	1.9182	2.540285	3.16237	0.0141462	0.00550276	0.103512	0.0648867
chr9	77212668	77212768	4145275	0	+	0.33	(0.32,0.35]	chr9	377777	3	SS3_PROX	SS3_PROX:INTRON	VPS13A	ENSG00000197969.14	ENST00000376636.7:ENST00000360280.8:ENST00000643348.1:ENST00000645632.1	protein_coding	protein_coding	protein_coding	protein_coding	5	74	2	1.9182	2.540285	3.16237	0.0141462	0.00550276	0.103512	0.0648867
chr5	6630881	6630979	2566757	0	-	0.520408	(0.515,0.57]	chr5	245964	49	INTRON	INTRON	NSUN2	ENSG00000037474.15	ENST00000264670.11:ENST00000504374.5:ENST00000506139.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	59	2	2.09379	2.54028	2.98677	0.00680216	0.00632549	0.0722266	0.071184
chr13	19725152	19725251	5552362	0	-	0.393939	(0.378,0.408]	chr13	530696	152	INTRON	INTRON	PSPC1	ENSG00000121390.19	ENST00000471658.5:ENST00000492741.5:ENST00000635562.1:ENST00000338910.9:ENST00000619300.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	178	2	2.48735	2.540235	2.59312	8.76888e-4	1.09321e-4	0.0271443	0.00884858
chr16	29612303	29612402	6471724	0	-	0.40404	(0.378,0.408]	chr16	625301	175	INTRON	INTRON	ENSG00000288632	ENSG00000288632.1	ENST00000675579.1	lncRNA	lncRNA	lncRNA	lncRNA	4	59	2	1.72045	2.540215	3.35998	0.0424671	0.00230615	0.161763	0.0428247
chr15	49136949	49137049	6167631	0	-	0.33	(0.32,0.35]	chr15	587869	4	SS5_PROX	SS5_PROX:INTRON	COPS2	ENSG00000166200.15	ENST00000388901.10:ENST00000299259.10:ENST00000542928.5:ENST00000558843.5:ENST00000561248.1:ENST00000559016.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	76	2	2.18299	2.54021	2.89743	0.0127608	0.00505063	0.0926667	0.0646039
chr6	135207427	135207526	2962435	0	+	0.363636	(0.35,0.378]	chr6	278661	36	INTRON	INTRON	MYB	ENSG00000118513.20	ENST00000341911.10:ENST00000442647.7:ENST00000316528.12:ENST00000616088.4:ENST00000339290.9:ENST00000367812.6:ENST00000463282.6:ENST00000525477.5:ENST00000533837.5:ENST00000367814.8:ENST00000525369.5:ENST00000438901.6:ENST00000525514.5:ENST00000526320.5:ENST00000526889.5:ENST00000529586.5:ENST00000531519.5:ENST00000533808.5:ENST00000528343.5:ENST00000524588.5:ENST00000525002.5:ENST00000525940.5:ENST00000526187.5:ENST00000526565.5:ENST00000528015.5:ENST00000528140.5:ENST00000528345.5:ENST00000528774.5:ENST00000529262.5:ENST00000531634.5:ENST00000531737.5:ENST00000533384.5:ENST00000533624.5:ENST00000534044.5:ENST00000534121.5:ENST00000531845.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	138	2	2.02753	2.54016	3.05279	0.00372465	2.81254e-4	0.0561984	0.015437
chrX	24778152	24778252	7632559	0	+	0.34	(0.32,0.35]	chrX	781731	24	INTRON	INTRON	POLA1	ENSG00000101868.13	ENST00000672178.1:ENST00000379068.8:ENST00000379059.7:ENST00000611764.2:ENST00000480125.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	66	2	1.72898	2.54007	3.35116	0.0425433	0.00283808	0.161951	0.0473151
chr16	11697327	11697426	6444736	0	-	0.424242	(0.408,0.44]	chr16	620790	49	INTRON	INTRON	TXNDC11	ENSG00000153066.13	ENST00000283033.10:ENST00000356957.7:ENST00000575591.1:ENST00000576969.5:ENST00000571882.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	35	2	2.18807	2.54	2.89193	0.0708044	0.00950364	0.184528	0.0863579
chr7	72886945	72887044	3329865	0	+	0.424242	(0.408,0.44]	chr7	309555	67	INTRON	INTRON	POM121	ENSG00000196313.13	ENST00000627934.3:ENST00000395270.5	protein_coding	protein_coding	protein_coding	protein_coding	2	35	2	2.18807	2.54	2.89193	0.0708044	0.00950364	0.184528	0.0863579
chr17	16439010	16439060	6562644	0	+	0.52	(0.515,0.57]	chr17	637913	1	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SNHG29	ENSG00000175061.19	ENST00000475947.7:ENST00000584177.5:ENST00000487066.6:ENST00000580180.6:ENST00000660020.1:ENST00000665646.1:ENST00000481898.6:ENST00000660419.1:ENST00000668333.1:ENST00000667979.2:ENST00000663781.1:ENST00000664939.1:ENST00000491009.6:ENST00000583400.7:ENST00000654778.1:ENST00000497774.6:ENST00000669136.1:ENST00000659884.1:ENST00000582911.6:ENST00000666215.2:ENST00000580770.5:ENST00000581718.6:ENST00000579473.6:ENST00000581361.5:ENST00000692724.1:ENST00000689691.1:ENST00000686699.1:ENST00000483140.7:ENST00000477249.7:ENST00000484836.2:ENST00000655540.1:ENST00000475953.6:ENST00000470491.7:ENST00000480811.6:ENST00000662869.1:ENST00000671170.1:ENST00000658116.2:ENST00000685971.1:ENST00000689483.1:ENST00000688805.1:ENST00000692720.1:ENST00000653954.1:ENST00000584926.5:ENST00000654561.1:ENST00000584141.5:ENST00000492250.5:ENST00000654356.1:ENST00000578757.5:ENST00000578380.6	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	46	564	2	2.22575	2.539985	2.85422	3.29809e-5	6.65573e-7	0.00460627	4.84343e-4
chr21	39291016	39291116	7465313	0	-	0.55	(0.515,0.57]	chr21	760548	104	INTRON	INTRON	BRWD1	ENSG00000185658.14	ENST00000333229.6:ENST00000342449.8:ENST00000380800.7	protein_coding	protein_coding	protein_coding	protein_coding	7	82	2	1.64356	2.53977	3.43598	0.024299	7.05043e-5	0.12011	0.00694412
chr16	2266191	2266274	6431685	0	-	0.445783	(0.44,0.476]	chr16	618818	2	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	RNPS1	ENSG00000205937.12	ENST00000397086.6:ENST00000566458.5:ENST00000320225.10:ENST00000565678.5:ENST00000561718.5:ENST00000568631.5:ENST00000569598.6:ENST00000301730.12:ENST00000567147.5:ENST00000561518.5:ENST00000564311.5:ENST00000570051.5:ENST00000564601.5:ENST00000564764.5:ENST00000566180.5:ENST00000562690.5:ENST00000569709.5:ENST00000565333.5:ENST00000565589.5:ENST00000564822.1:ENST00000566783.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	146	2	2.52598	2.539755	2.55353	5.66455e-4	4.52247e-4	0.0219934	0.0192381
chr15	38268936	38269036	5998512	0	+	0.54	(0.515,0.57]	chr15	570204	3	INTRON	INTRON	SPRED1	ENSG00000166068.13	ENST00000299084.9:ENST00000561205.1:ENST00000561317.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	58	2	2.02107	2.53973	3.05839	0.00910188	0.00485936	0.0809976	0.0640618
chr15	22543638	22543733	5975012	0	+	0.189474	[0,0.28]	chr15	568121	1	INTRON	INTRON	HERC2P2	ENSG00000276550.5	ENST00000613386.4:ENST00000619021.4	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	2	49	2	2.38757	2.53972	2.69187	0.0552962	0.0221271	0.165463	0.123903
chr22	20396017	20396116	7479093	0	+	0.444444	(0.44,0.476]	chr22	762912	2	INTRON	INTRON	ZNF74	ENSG00000185252.19	ENST00000611540.4:ENST00000403682.7:ENST00000400451.7:ENST00000357502.5:ENST00000493734.5:ENST00000420626.1:ENST00000437275.5:ENST00000405993.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	114	2	2.28367	2.53966	2.79565	0.00160306	7.94781e-4	0.0367961	0.0260201
chr6	18263742	18263842	3069243	0	-	0.42	(0.408,0.44]	chr6	285216	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	DEK	ENSG00000124795.17	ENST00000652689.1:ENST00000651624.1:ENST00000515770.2:ENST00000651992.1:ENST00000507591.2:ENST00000505224.5:ENST00000244776.11:ENST00000652576.1:ENST00000503715.5:ENST00000515742.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	136	2	2.33163	2.53961	2.74759	0.00102152	4.88329e-4	0.029231300000000002	0.0199693
chr1	204550476	204550575	297773	0	+	0.181818	[0,0.28]	chr1	34331	9	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	MDM4	ENSG00000198625.14	ENST00000367183.7:ENST00000391947.6:ENST00000454264.6:ENST00000612738.4:ENST00000614459.4:ENST00000616250.4:ENST00000367182.8:ENST00000463049.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	15	283	2	2.03475	2.53952	3.04429	0.00167265	2.89095e-4	0.0379649	0.0156667
chr5	126946194	126946294	2713714	0	-	0.48	(0.476,0.515]	chr5	255274	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	MARCHF3	ENSG00000173926.6	ENST00000308660.6:ENST00000502289.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	90	2	2.48789	2.539485	2.59108	0.00256502	0.00196853	0.0466761	0.0402283
chr18	45984132	45984232	6964394	0	-	0.35	(0.32,0.35]	chr18	689276	7	UTR3	UTR3:EXON_MRNA	PSTPIP2	ENSG00000152229.18	ENST00000409746.5:ENST00000589328.5	protein_coding	protein_coding	protein_coding	protein_coding	11	196	2	2.53063	2.539475	2.54832	0.00105397	3.68246e-4	0.0299229	0.0178217
chr1	155692341	155692441	229545	0	+	0.44	(0.408,0.44]	chr1	26994	27	INTRON	INTRON	DAP3	ENSG00000132676.16	ENST00000471642.6:ENST00000471214.5:ENST00000343043.7:ENST00000368336.10:ENST00000535183.5:ENST00000421487.6:ENST00000496863.5:ENST00000465375.5:ENST00000462002.5:ENST00000470830.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	35	2	2.49258	2.53941	2.58624	0.0314608	0.0273686	0.144381	0.123904
chr7	127820156	127820255	3404092	0	+	0.424242	(0.408,0.44]	chr7	318140	122	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000468166.5:ENST00000465900.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	35	2	2.49258	2.53941	2.58624	0.0314608	0.0273686	0.144381	0.123904
chr17	32354608	32354707	6598025	0	+	0.535354	(0.515,0.57]	chr17	641893	23	INTRON	INTRON	ZNF207	ENSG00000010244.19	ENST00000321233.10:ENST00000394673.6:ENST00000394670.9:ENST00000579634.5:ENST00000580759.5:ENST00000342555.10:ENST00000577908.5:ENST00000394679.9:ENST00000582165.1:ENST00000577324.1:ENST00000578918.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	124	2	2.5304	2.5393499999999998	2.5483	4.26839e-4	3.73969e-4	0.0189958	0.0174448
chr3	49361824	49361919	1693551	0	-	0.431579	(0.408,0.44]	chr3	173674	9	UTR3	UTR3:EXON_MRNA:INTRON	RHOA	ENSG00000067560.14	ENST00000678200.1:ENST00000422781.6:ENST00000676712.2:ENST00000678921.2:ENST00000445425.6:ENST00000454011.7:ENST00000418115.6:ENST00000679208.1	protein_coding	protein_coding	protein_coding	protein_coding	6	71	2	1.62843	2.53931	3.45019	0.025242	0.00152664	0.133676	0.0353936
chr10	28562828	28562928	4414102	0	+	0.3	(0.28,0.32]	chr10	407148	244	INTRON	INTRON	WAC	ENSG00000095787.24	ENST00000680735.1:ENST00000375664.8:ENST00000428935.6:ENST00000651598.1:ENST00000628285.3:ENST00000681112.1:ENST00000679570.1:ENST00000375646.5:ENST00000354911.9:ENST00000347934.8:ENST00000420266.6:ENST00000651885.1:ENST00000651441.1:ENST00000679398.1:ENST00000424454.5:ENST00000442148.6:ENST00000448193.5:ENST00000414108.6:ENST00000679428.1:ENST00000439676.5:ENST00000345541.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	114	2	2.36963	2.539255	2.70888	0.0157022	4.99158e-4	0.101453	0.020217099999999998
chr1	19203408	19203507	386774	0	-	0.484848	(0.476,0.515]	chr1	46143	12	INTRON	INTRON	UBR4	ENSG00000127481.15	ENST00000375254.8	protein_coding	protein_coding	protein_coding	protein_coding	6	71	2	1.87849	2.53912	3.19975	0.00992862	0.00383299	0.0877296	0.0542786
chr11	32908305	32908405	4764866	0	+	0.39	(0.378,0.408]	chr11	440609	146	INTRON	INTRON	QSER1	ENSG00000060749.16	ENST00000650167.2:ENST00000399302.7:ENST00000527250.5	protein_coding	protein_coding	protein_coding	protein_coding	3	48	2	2.41037	2.53911	2.66785	0.0224639	0.0100185	0.11692	0.0880217
chr18	2715273	2715372	6865482	0	+	0.282828	(0.28,0.32]	chr18	680035	70	INTRON	INTRON	SMCHD1	ENSG00000101596.17	ENST00000320876.11:ENST00000688342.1:ENST00000693213.1:ENST00000577880.5:ENST00000584897.5:ENST00000581711.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	109	2	2.2058	2.539065	2.87233	0.00496409	0.0028269	0.0646039	0.0472361
chr17	82644916	82645015	6853658	0	-	0.515152	(0.476,0.515]	chr17	679390	5	INTRON	INTRON	WDR45B	ENSG00000141580.16	ENST00000392325.9:ENST00000572583.5:ENST00000573616.5:ENST00000571817.5:ENST00000574828.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	56	2	2.25138	2.5390550000000003	2.82673	0.0134403	0.00692374	0.0946278	0.0753208
chr1	16453094	16453191	36216	0	+	0.402062	(0.378,0.408]	chr1	4424	7	INTRON	INTRON	NECAP2	ENSG00000157191.20	ENST00000504551.6:ENST00000337132.10:ENST00000457722.6:ENST00000443980.6:ENST00000492095.5:ENST00000459640.5:ENST00000496239.5:ENST00000513161.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	48	2	2.17608	2.53885	2.90162	0.0218783	0.0113157	0.123836	0.0886121
chr16	84995621	84995721	6534012	0	-	0.4	(0.378,0.408]	chr16	633146	3	SS5_PROX	SS5_PROX:INTRON	ZDHHC7	ENSG00000153786.13	ENST00000313732.9:ENST00000344861.9:ENST00000564466.5:ENST00000569017.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	48	2	2.17608	2.53885	2.90162	0.0218783	0.0113157	0.123836	0.0886121
chr7	131482348	131482447	3418013	0	+	0.353535	(0.35,0.378]	chr7	319290	33	INTRON	INTRON	MKLN1	ENSG00000128585.18	ENST00000421797.6:ENST00000352689.11:ENST00000458153.5:ENST00000498778.5:ENST00000468830.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	52	2	2.28125	2.53884	2.79643	0.0182271	0.013543	0.107842	0.101363
chr18	59336684	59336782	6980809	0	-	0.469388	(0.44,0.476]	chr18	690731	31	INTRON	INTRON	LMAN1	ENSG00000074695.6	ENST00000251047.6	protein_coding	protein_coding	protein_coding	protein_coding	14	198	2	2.50497	2.53878	2.57259	3.05687e-4	1.17823e-4	0.0161362	0.00930884
chr19	19429089	19429188	7035581	0	+	0.575758	(0.57,1]	chr19	701439	7	INTRON	INTRON	GATAD2A	ENSG00000167491.18	ENST00000494516.6:ENST00000360315.7:ENST00000609040.5:ENST00000417582.6:ENST00000683918.1:ENST00000448576.6:ENST00000432704.5:ENST00000404158.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	33	2	2.42282	2.53876	2.6547	0.00879576	0.00346848	0.0790073	0.0539802
chr1	150608560	150608660	551169	0	-	0.33	(0.32,0.35]	chr1	64776	69	INTRON	INTRON	ENSA	ENSG00000143420.19	ENST00000369016.8	protein_coding	protein_coding	protein_coding	protein_coding	2	40	2	2.23182	2.538755	2.84569	0.068598	0.0121137	0.184298	0.0962599
chr4	25416031	25416129	1934373	0	+	0.336735	(0.32,0.35]	chr4	194292	6	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ANAPC4	ENSG00000053900.11	ENST00000315368.8:ENST00000510092.5:ENST00000504256.5:ENST00000515848.1:ENST00000506973.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	40	2	2.23182	2.538755	2.84569	0.068598	0.0121137	0.184298	0.0962599
chr5	54138291	54138391	2619192	0	-	0.33	(0.32,0.35]	chr5	248848	245	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2:ENST00000505630.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	40	2	2.23182	2.538755	2.84569	0.068598	0.0121137	0.184298	0.0962599
chr5	109393751	109393851	2702210	0	-	0.35	(0.32,0.35]	chr5	254366	26	INTRON	INTRON	PJA2	ENSG00000198961.10	ENST00000361189.7:ENST00000511624.1:ENST00000512822.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	40	2	2.23182	2.538755	2.84569	0.068598	0.0121137	0.184298	0.0962599
chr1	168244037	168244137	250345	0	+	0.55	(0.515,0.57]	chr1	29769	16	UTR3	UTR3:EXON_MRNA	SFT2D2	ENSG00000213064.10	ENST00000271375.7	protein_coding	protein_coding	protein_coding	protein_coding	3	41	2	2.32967	2.538695	2.74772	0.0142192	0.0133671	0.103638	0.0946278
chr11	893819	893919	4890299	0	-	0.56	(0.515,0.57]	chr11	457999	3	SS3_PROX	SS3_PROX:INTRON	CHID1	ENSG00000177830.18	ENST00000323578.13:ENST00000449825.5:ENST00000454838.6:ENST00000429789.6:ENST00000528581.5:ENST00000436108.6:ENST00000526714.5:ENST00000524832.5:ENST00000531859.5:ENST00000534254.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	41	2	2.32967	2.538695	2.74772	0.0142192	0.0133671	0.103638	0.0946278
chr18	1406386	1406486	6942256	0	-	0.53	(0.515,0.57]	chr18	686627	144	INTRON	INTRON	LINC00470	ENSG00000132204.14	ENST00000657423.1:ENST00000657618.1:ENST00000669242.1:ENST00000660475.1:ENST00000653775.1:ENST00000661931.1:ENST00000412816.7:ENST00000667416.1:ENST00000661852.1:ENST00000661646.1:ENST00000667776.1:ENST00000654559.1:ENST00000661233.1:ENST00000653213.1:ENST00000659094.1:ENST00000660964.1:ENST00000577403.6:ENST00000669153.1:ENST00000657121.1:ENST00000655957.1:ENST00000659289.1:ENST00000665133.1:ENST00000671558.1:ENST00000666542.1:ENST00000669312.1:ENST00000581430.5:ENST00000658090.1:ENST00000667225.1:ENST00000582570.1	lncRNA	lncRNA	lncRNA	lncRNA	3	41	2	2.32967	2.538695	2.74772	0.0142192	0.0133671	0.103638	0.0946278
chr16	29610310	29610409	6471704	0	-	0.575758	(0.57,1]	chr16	625301	155	INTRON	INTRON	ENSG00000288632	ENSG00000288632.1	ENST00000675579.1	lncRNA	lncRNA	lncRNA	lncRNA	4	33	2	2.50742	2.53869	2.56996	0.00631173	0.00499145	0.0687526	0.0646039
chr12	93717462	93717562	5190300	0	+	0.29	(0.28,0.32]	chr12	490910	380	INTRON	INTRON	CRADD	ENSG00000169372.13	ENST00000332896.8:ENST00000549615.5:ENST00000552983.5:ENST00000552033.5:ENST00000551065.5:ENST00000548483.5:ENST00000542893.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	45	2	2.29724	2.53864	2.78004	0.0554156	0.0193244	0.18407	0.108861
chr6	17660953	17661052	3065743	0	-	0.414141	(0.408,0.44]	chr6	284824	87	INTRON	INTRON	NUP153	ENSG00000124789.12	ENST00000613258.4:ENST00000537253.5:ENST00000262077.3	protein_coding	protein_coding	protein_coding	protein_coding	8	115	2	2.48237	2.53862	2.59487	0.00202403	5.72623e-4	0.04086	0.0217398
chr17	41912019	41912119	6770245	0	-	0.53	(0.515,0.57]	chr17	666563	2	SS5_PROX	SS5_PROX:INTRON	ACLY	ENSG00000131473.17	ENST00000590151.5:ENST00000352035.7:ENST00000353196.5:ENST00000537919.5:ENST00000393896.6:ENST00000590770.5:ENST00000590735.1:ENST00000592970.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	103	2	2.05789	2.538605	3.01932	0.00786509	4.42021e-5	0.076155	0.0053901
chr16	81466202	81466302	6405211	0	+	0.45	(0.44,0.476]	chr16	615026	203	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8	protein_coding	protein_coding	protein_coding	protein_coding	7	110	2	2.34775	2.538575	2.7294	0.00466011	4.49184e-4	0.0629753	0.0196044
chr5	79635661	79635760	2398964	0	+	0.484848	(0.476,0.515]	chr5	231707	118	INTRON	INTRON	TENT2	ENSG00000164329.14	ENST00000423041.6:ENST00000504233.5:ENST00000453514.6:ENST00000428308.6:ENST00000296783.7	protein_coding	protein_coding	protein_coding	protein_coding	4	63	2	2.10874	2.5384900000000004	2.96824	0.0285608	9.98194e-4	0.12666	0.0290732
chr13	37004127	37004224	5468905	0	+	0.505155	(0.476,0.515]	chr13	523995	7	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	EXOSC8	ENSG00000120699.14	ENST00000489088.5:ENST00000470423.2:ENST00000684866.1:ENST00000686701.1:ENST00000488108.6:ENST00000689744.1:ENST00000692143.1:ENST00000464235.6:ENST00000239893.9:ENST00000693100.1:ENST00000685624.1:ENST00000389704.4:ENST00000686729.1:ENST00000692477.1:ENST00000474661.5:ENST00000686472.1:ENST00000490537.6:ENST00000690774.1:ENST00000688436.1:ENST00000692787.1:ENST00000685563.1:ENST00000693733.1:ENST00000687482.1:ENST00000685643.1:ENST00000690673.1:ENST00000488779.6:ENST00000689948.1:ENST00000688064.1:ENST00000692761.1:ENST00000687944.1:ENST00000692588.1:ENST00000691611.1:ENST00000692636.1:ENST00000495092.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	46	2	2.37731	2.53849	2.69967	0.0195838	0.0111793	0.109483	0.0937192
chr7	72950982	72951078	3553765	0	-	0.583333	(0.57,1]	chr7	330613	4	INTRON	INTRON	NSUN5P2	ENSG00000106133.18	ENST00000602348.5:ENST00000444583.6:ENST00000388955.8:ENST00000485741.6:ENST00000457352.4	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	11	83	2	2.44335	2.5384700000000002	2.63359	5.18145e-4	7.53662e-5	0.0204059	0.00777227
chr13	95294356	95294456	5639809	0	-	0.42	(0.408,0.44]	chr13	537181	246	INTRON	INTRON	ABCC4	ENSG00000125257.16	ENST00000645237.2:ENST00000643051.1:ENST00000643842.1:ENST00000646439.1:ENST00000643816.1:ENST00000536256.3:ENST00000643556.1:ENST00000629385.1:ENST00000642524.1:ENST00000645532.1:ENST00000644471.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	36	2	2.2957	2.5384599999999997	2.78122	0.0516458	0.015812	0.176696	0.101453
chr17	80662989	80663089	6685969	0	+	0.43	(0.408,0.44]	chr17	653415	188	INTRON	INTRON	RPTOR	ENSG00000141564.15	ENST00000574767.5:ENST00000577161.5:ENST00000306801.8:ENST00000649732.1:ENST00000570891.5:ENST00000544334.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	36	2	2.2957	2.5384599999999997	2.78122	0.0516458	0.015812	0.176696	0.101453
chr17	70087978	70088078	6828328	0	-	0.37	(0.35,0.378]	chr17	675009	148	INTRON	INTRON	ENSG00000230258	ENSG00000230258.6	ENST00000435112.5	lncRNA	lncRNA	lncRNA	lncRNA	3	55	2	2.1617	2.53843	2.91516	0.0771502	0.0013628	0.196285	0.0339121
chr1	50917881	50917981	451832	0	-	0.35	(0.32,0.35]	chr1	54267	595	INTRON	INTRON	FAF1	ENSG00000185104.21	ENST00000396153.7:ENST00000487898.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	40	2	2.51061	2.538395	2.56618	0.0364463	0.0274185	0.138959	0.136498
chr10	47529085	47529185	4609234	0	-	0.33	(0.32,0.35]	chr10	424641	52	INTRON	INTRON	ENSG00000254929	ENSG00000254929.6	ENST00000605970.5:ENST00000431840.2	lncRNA	lncRNA	lncRNA	lncRNA	2	40	2	2.51061	2.538395	2.56618	0.0364463	0.0274185	0.138959	0.136498
chr11	3708653	3708753	4894263	0	-	0.34	(0.32,0.35]	chr11	458814	10	INTRON	INTRON	NUP98	ENSG00000110713.17	ENST00000359171.8:ENST00000324932.12:ENST00000650171.1:ENST00000355260.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	40	2	2.51061	2.538395	2.56618	0.0364463	0.0274185	0.138959	0.136498
chr14	23008120	23008219	5842243	0	-	0.343434	(0.32,0.35]	chr14	555459	11	INTRON	INTRON	C14orf93	ENSG00000100802.15	ENST00000299088.11:ENST00000341470.8:ENST00000397379.7:ENST00000397382.8:ENST00000397377.5:ENST00000397376.6:ENST00000553675.5:ENST00000553931.5:ENST00000554536.5:ENST00000555575.5:ENST00000556812.5:ENST00000553958.5:ENST00000555098.5:ENST00000555998.5:ENST00000556419.5:ENST00000554179.5:ENST00000553606.5:ENST00000557513.5:ENST00000553316.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	40	2	2.51061	2.538395	2.56618	0.0364463	0.0274185	0.138959	0.136498
chr15	41052648	41052745	6152582	0	-	0.340206	(0.32,0.35]	chr15	585325	22	INTRON	INTRON	INO80	ENSG00000128908.18	ENST00000648947.1:ENST00000401393.7:ENST00000558357.6:ENST00000559995.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	40	2	2.51061	2.538395	2.56618	0.0364463	0.0274185	0.138959	0.136498
chr15	67123715	67123815	6052428	0	+	0.35	(0.32,0.35]	chr15	576266	243	INTRON	INTRON	SMAD3	ENSG00000166949.17	ENST00000559460.5:ENST00000327367.9:ENST00000679624.1:ENST00000559937.1:ENST00000559092.1:ENST00000560175.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	40	2	2.51061	2.538395	2.56618	0.0364463	0.0274185	0.138959	0.136498
chr7	101999198	101999298	3368186	0	+	0.34	(0.32,0.35]	chr7	315233	392	INTRON	INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000497815.5:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000558469.5:ENST00000560541.5:ENST00000558836.5:ENST00000606749.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	40	2	2.51061	2.538395	2.56618	0.0364463	0.0274185	0.138959	0.136498
chr15	85003134	85003234	6089143	0	+	0.45	(0.44,0.476]	chr15	579504	204	INTRON	INTRON	PDE8A	ENSG00000073417.15	ENST00000310298.8:ENST00000557957.5:ENST00000394553.6:ENST00000339708.9:ENST00000478717.5:ENST00000485596.5:ENST00000559742.5:ENST00000559086.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	62	2	2.42996	2.538325	2.64669	0.0104804	0.0040295	0.0855777	0.0578376
chr1	235271246	235271345	663293	0	-	0.525253	(0.515,0.57]	chr1	78552	101	INTRON	INTRON	ARID4B	ENSG00000054267.22	ENST00000349213.7:ENST00000366603.6:ENST00000264183.9:ENST00000421364.5:ENST00000491632.5:ENST00000418304.1:ENST00000466653.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	61	2	1.82113	2.5383	3.25547	0.0118311	0.00261721	0.0962115	0.0455413
chr12	6586057	6586153	5259423	0	-	0.510417	(0.476,0.515]	chr12	500731	21	INTRON	INTRON	CHD4	ENSG00000111642.16	ENST00000645022.1:ENST00000544040.7:ENST00000544484.6:ENST00000357008.7:ENST00000642810.1:ENST00000642637.1:ENST00000643335.1:ENST00000643815.1:ENST00000646806.1:ENST00000644137.1:ENST00000642879.1:ENST00000645645.1:ENST00000642594.1:ENST00000646360.1:ENST00000646268.1:ENST00000645095.1:ENST00000644352.1:ENST00000647483.1:ENST00000646608.1:ENST00000643538.1:ENST00000645005.1:ENST00000644801.1:ENST00000644289.1:ENST00000646366.1:ENST00000644356.1:ENST00000540960.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	46	2	2.13304	2.53827	2.9435	0.024866	0.00929849	0.132101	0.0817766
chr6	124964124	124964223	2951488	0	+	0.464646	(0.44,0.476]	chr6	277668	3	INTRON	INTRON	RNF217	ENSG00000146373.17	ENST00000521654.7:ENST00000560949.5:ENST00000519971.1:ENST00000519565.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	112	2	1.68502	2.538195	3.39137	0.0115528	1.73175e-4	0.0962115	0.0120833
chr14	60943029	60943129	5738813	0	+	0.46	(0.44,0.476]	chr14	544921	628	INTRON	INTRON	MNAT1	ENSG00000020426.11	ENST00000261245.9:ENST00000539616.6:ENST00000554002.5:ENST00000557134.1	protein_coding	protein_coding	protein_coding	protein_coding	4	56	2	1.66462	2.53819	3.41176	0.0520247	0.00130987	0.159508	0.0333932
chr19	28724418	28724518	7168351	0	-	0.45	(0.44,0.476]	chr19	724254	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ENSG00000283403:ENSG00000283269	ENSG00000283403.1:ENSG00000283269.1	ENST00000592347.5:ENST00000636857.1:ENST00000586528.1	lncRNA	lncRNA	lncRNA:transcribed_unprocessed_pseudogene	lncRNA:processed_transcript:transcribed_unprocessed_pseudogene	4	56	2	1.66462	2.53819	3.41176	0.0520247	0.00130987	0.159508	0.0333932
chr1	114707652	114707751	528085	0	-	0.313131	(0.28,0.32]	chr1	62198	33	UTR3	UTR3:EXON_MRNA	NRAS	ENSG00000213281.5	ENST00000369535.5	protein_coding	protein_coding	protein_coding	protein_coding	5	81	2	2.03152	2.538185	3.04485	0.00983556	0.00894006	0.0877296	0.0799922
chr21	6327659	6327758	7364850	0	+	0.414141	(0.408,0.44]	chr21	751664	32	INTRON	INTRON	ENSG00000278903	ENSG00000278903.4	ENST00000688458.1:ENST00000689306.1:ENST00000692898.1:ENST00000624576.3:ENST00000623738.3:ENST00000692237.1:ENST00000692046.1:ENST00000689354.1:ENST00000624165.1	lncRNA	lncRNA	lncRNA	lncRNA	32	420	2	2.11415	2.5381400000000003	2.96213	1.26949e-4	7.00085e-6	0.00966059	0.00198457
chr16	21965605	21965705	6319669	0	+	0.3	(0.28,0.32]	chr16	604991	1	SS5_PROX	SS5_PROX:INTRON	UQCRC2	ENSG00000140740.11	ENST00000268379.9:ENST00000561553.5:ENST00000563898.5:ENST00000563711.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	79	2	2.29708	2.538125	2.77917	0.0195087	0.00285651	0.109483	0.0494641
chr1	227191088	227191188	650441	0	-	0.53	(0.515,0.57]	chr1	77078	301	INTRON	INTRON	CDC42BPA	ENSG00000143776.20	ENST00000366766.8:ENST00000366769.7:ENST00000334218.9:ENST00000366767.7:ENST00000366764.8	protein_coding	protein_coding	protein_coding	protein_coding	4	51	2	2.24433	2.538105	2.83188	0.0108207	0.00725078	0.0920575	0.072984
chr7	66952031	66952130	3326545	0	+	0.292929	(0.28,0.32]	chr7	309365	5	INTRON	INTRON	TMEM248	ENSG00000106609.16	ENST00000341567.8:ENST00000433271.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	71	2	1.64432	2.53809	3.43186	0.0606133	0.00160646	0.171142	0.0367961
chr3	39407342	39407422	1401785	0	+	0.3375	(0.32,0.35]	chr3	147205	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPSA	ENSG00000168028.14	ENST00000477325.1:ENST00000475346.1:ENST00000487876.1:ENST00000301821.11:ENST00000458478.5:ENST00000443003.2:ENST00000444512.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	111	2	1.59364	2.538085	3.48253	0.0413426	1.69478e-4	0.161557	0.0119596
chr11	46793723	46793821	4948221	0	-	0.489796	(0.476,0.515]	chr11	463781	28	INTRON	INTRON	CKAP5	ENSG00000175216.15	ENST00000529230.6:ENST00000312055.9:ENST00000354558.7	protein_coding	protein_coding	protein_coding	protein_coding	3	47	2	1.72558	2.5380849999999997	3.35059	0.0767648	0.00171515	0.196164	0.0381936
chr14	31172522	31172622	5858655	0	-	0.5	(0.476,0.515]	chr14	556698	4	SS3_PROX	SS3_PROX:INTRON	HECTD1	ENSG00000092148.14	ENST00000399332.6:ENST00000553700.5:ENST00000693685.1:ENST00000692835.1:ENST00000554882.6:ENST00000611816.5:ENST00000688933.1:ENST00000691390.1:ENST00000553957.6:ENST00000687002.1:ENST00000554471.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	63	2	2.37731	2.5380849999999997	2.69886	0.0111793	0.00385209	0.0937192	0.0542786
chr17	32775074	32775170	6756087	0	-	0.489583	(0.476,0.515]	chr17	664042	19	INTRON	INTRON	MYO1D	ENSG00000176658.17	ENST00000318217.10:ENST00000394649.8:ENST00000579584.5:ENST00000583621.1	protein_coding	protein_coding	protein_coding	protein_coding	3	47	2	1.72558	2.5380849999999997	3.35059	0.0767648	0.00171515	0.196164	0.0381936
chr22	18551482	18551580	7550865	0	-	0.510204	(0.476,0.515]	chr22	771823	23	INTRON	INTRON	PI4KAP1	ENSG00000274602.5	ENST00000652586.1:ENST00000612500.4:ENST00000611748.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	3	47	2	1.72558	2.5380849999999997	3.35059	0.0767648	0.00171515	0.196164	0.0381936
chr11	31495909	31496008	4939104	0	-	0.262626	[0,0.28]	chr11	462601	73	INTRON	INTRON	IMMP1L	ENSG00000148950.11	ENST00000532287.6:ENST00000534812.5:ENST00000526776.5:ENST00000278200.5:ENST00000648582.1:ENST00000533642.1:ENST00000527184.5:ENST00000528161.5:ENST00000532624.5:ENST00000529749.5:ENST00000530023.5:ENST00000531693.1:ENST00000532668.1:ENST00000533921.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	92	2	1.95835	2.538025	3.1177	0.014237	0.00849154	0.103751	0.0778788
chr10	48044413	48044512	4609571	0	-	0.464646	(0.44,0.476]	chr10	424706	50	INTRON	INTRON	ENSG00000289444	ENSG00000289444.1	ENST00000687180.1	lncRNA	lncRNA	lncRNA	lncRNA	3	46	2	2.27304	2.537895	2.80275	0.0158915	0.0146513	0.109464	0.0982604
chr3	28271059	28271159	1390842	0	+	0.45	(0.44,0.476]	chr3	145643	73	INTRON	INTRON	CMC1	ENSG00000187118.14	ENST00000477739.1:ENST00000423894.5:ENST00000466830.6:ENST00000334841.10:ENST00000418849.2:ENST00000396610.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	46	2	2.27304	2.537895	2.80275	0.0158915	0.0146513	0.109464	0.0982604
chr17	27100212	27100312	6579827	0	+	0.41	(0.408,0.44]	chr17	639586	34	INTRON	INTRON	ENSG00000285822	ENSG00000285822.1	ENST00000649401.1	lncRNA	lncRNA	lncRNA	lncRNA	5	64	2	1.70409	2.537855	3.37162	0.028108	0.00208674	0.137011	0.0411801
chr17	47215714	47215814	6621415	0	+	0.25	[0,0.28]	chr17	645806	14	INTRON	INTRON	MYL4	ENSG00000198336.9	ENST00000571981.5:ENST00000572316.5:ENST00000354968.5:ENST00000570772.5:ENST00000536623.6:ENST00000576874.5:ENST00000573747.6:ENST00000393450.5:ENST00000572303.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	109	2	2.40162	2.5377799999999997	2.67394	0.00697944	0.00511828	0.0718189	0.064713
chr17	59838112	59838203	6643714	0	+	0.318681	(0.28,0.32]	chr17	648782	3	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	VMP1	ENSG00000062716.13	ENST00000262291.9:ENST00000592619.5:ENST00000591877.1:ENST00000591782.1:ENST00000588617.1:ENST00000592790.1:ENST00000587470.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	44	809	2	2.12373	2.53776	2.95179	6.40079e-4	9.03557e-7	0.0231685	5.38473e-4
chr10	21696145	21696243	4406051	0	+	0.234694	[0,0.28]	chr10	406536	3	EXON_LNCRNA	EXON_LNCRNA:INTRON	MLLT10:ENSG00000289528	ENSG00000078403.17:ENSG00000289528.1	ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000651298.1:ENST00000377059.7:ENST00000651382.1:ENST00000438473.6:ENST00000420525.1:ENST00000690578.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA	2	49	2	2.27119	2.537575	2.80396	0.070351	0.0161429	0.184298	0.109464
chr20	49063844	49063941	7283963	0	+	0.237113	[0,0.28]	chr20	740826	1	INTRON	INTRON	CSE1L	ENSG00000124207.17	ENST00000396192.7:ENST00000262982.3	protein_coding	protein_coding	protein_coding	protein_coding	2	49	2	2.27119	2.537575	2.80396	0.070351	0.0161429	0.184298	0.109464
chr10	73046524	73046624	4647335	0	-	0.34	(0.32,0.35]	chr10	427513	2	SS5_PROX	SS5_PROX:INTRON	P4HA1	ENSG00000122884.13	ENST00000394890.7:ENST00000307116.6:ENST00000373008.6:ENST00000440381.5:ENST00000263556.3	protein_coding	protein_coding	protein_coding	protein_coding	11	186	2	2.45496	2.5375449999999997	2.62013	0.00129351	1.94812e-4	0.0329329	0.0122224
chr20	49687587	49687687	7353365	0	-	0.36	(0.35,0.378]	chr20	749846	305	INTRON	INTRON	B4GALT5	ENSG00000158470.5	ENST00000371711.4	protein_coding	protein_coding	protein_coding	protein_coding	5	69	2	1.81955	2.5375199999999998	3.25549	0.0194679	0.00363602	0.11986	0.0535085
chr12	122219180	122219274	5439645	0	-	0.425532	(0.408,0.44]	chr12	520180	4	INTRON	INTRON	DIABLO	ENSG00000184047.20	ENST00000443649.9:ENST00000650715.1:ENST00000464942.7:ENST00000353548.11:ENST00000644227.1:ENST00000644509.1:ENST00000342392.3:ENST00000645569.1:ENST00000267169.11:ENST00000540535.6:ENST00000642640.1:ENST00000541273.6:ENST00000541656.6:ENST00000446652.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	72	2	1.39614	2.5374999999999996	3.67886	0.0567929	3.86173e-4	0.167723	0.017761
chr1	162591386	162591480	238623	0	+	0.265957	[0,0.28]	chr1	28740	5	INTRON	INTRON	UAP1	ENSG00000117143.14	ENST00000367925.6:ENST00000367926.9	protein_coding	protein_coding	protein_coding	protein_coding	2	49	2	2.44242	2.5374	2.63238	0.0491024	0.0259691	0.155269	0.133676
chr1	179213048	179213148	592913	0	-	0.16	[0,0.28]	chr1	71074	701	INTRON	INTRON	ABL2	ENSG00000143322.21	ENST00000502732.6:ENST00000367623.8:ENST00000507173.5:ENST00000511413.5:ENST00000668691.1:ENST00000392043.4:ENST00000660584.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	49	2	2.44242	2.5374	2.63238	0.0491024	0.0259691	0.155269	0.133676
chr2	55613775	55613875	1125083	0	-	0.24	[0,0.28]	chr2	120677	93	INTRON	INTRON	PPP4R3B	ENSG00000275052.5	ENST00000616407.2:ENST00000611717.4:ENST00000616288.4:ENST00000470801.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	49	2	2.44242	2.5374	2.63238	0.0491024	0.0259691	0.155269	0.133676
chr2	131142438	131142536	864778	0	+	0.27551	[0,0.28]	chr2	97160	18	INTRON	INTRON	PLEKHB2	ENSG00000115762.17	ENST00000403716.5:ENST00000439822.6:ENST00000409158.5:ENST00000234115.10:ENST00000628582.2:ENST00000693505.1:ENST00000438882.6:ENST00000404460.5:ENST00000409612.5:ENST00000409279.1	protein_coding	protein_coding	protein_coding	protein_coding	2	49	2	2.44242	2.5374	2.63238	0.0491024	0.0259691	0.155269	0.133676
chr5	154798796	154798896	2527447	0	+	0.33	(0.32,0.35]	chr5	241658	15	EXON_MRNA	EXON_MRNA:INTRON	LARP1	ENSG00000155506.19	ENST00000687700.1:ENST00000336314.9:ENST00000690816.1:ENST00000518297.6:ENST00000524248.5:ENST00000685946.1:ENST00000523163.5:ENST00000518595.1:ENST00000518742.1:ENST00000685355.1:ENST00000688232.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	54	2	1.94202	2.537395	3.13277	0.0486128	0.00458313	0.153946	0.0622676
chr19	1798957	1799056	7113310	0	-	0.474747	(0.44,0.476]	chr19	714742	3	UTR3	UTR3:EXON_MRNA:INTRON	ATP8B3	ENSG00000130270.16	ENST00000310127.10:ENST00000531925.5:ENST00000525591.5:ENST00000526092.6:ENST00000533107.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	86	2	1.76195	2.53735	3.31275	0.0252608	1.73222e-4	0.12011	0.0114086
chr3	42621916	42622016	1406191	0	+	0.36	(0.35,0.378]	chr3	147674	4	SS5_PROX	SS5_PROX:INTRON	NKTR	ENSG00000114857.19	ENST00000468735.6:ENST00000487466.5:ENST00000429888.5:ENST00000232978.13:ENST00000478488.1:ENST00000465584.5:ENST00000466553.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	28	424	2	1.91493	2.537345	3.15976	0.00147913	5.44548e-7	0.0349143	3.96157e-4
chr14	101886426	101886525	5819764	0	+	0.343434	(0.32,0.35]	chr14	551895	25	INTRON	INTRON	PPP2R5C	ENSG00000078304.20	ENST00000694906.1:ENST00000422945.6:ENST00000328724.9:ENST00000350249.7:ENST00000557621.5:ENST00000334743.9:ENST00000445439.7:ENST00000557095.5:ENST00000554137.5:ENST00000556218.5:ENST00000557534.1:ENST00000557716.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	65	2	2.22655	2.537335	2.84812	0.0147575	0.00823133	0.0983813	0.0812969
chr1	21732700	21732768	396351	0	-	0.279412	[0,0.28]	chr1	47297	1	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	USP48	ENSG00000090686.16	ENST00000400301.5:ENST00000308271.14:ENST00000529637.5:ENST00000526044.5:ENST00000534705.5:ENST00000421625.6:ENST00000374730.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	80	2	2.09841	2.537285	2.97616	0.0151026	0.0128425	0.108435	0.0926667
chr5	890854	890954	2564615	0	-	0.35	(0.32,0.35]	chr5	245525	3	SS5_PROX	SS5_PROX:INTRON	BRD9	ENSG00000028310.18	ENST00000467963.6:ENST00000495265.5:ENST00000490814.6:ENST00000489816.5:ENST00000483173.5:ENST00000466684.5:ENST00000489093.1:ENST00000487688.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	88	2	2.25069	2.5372700000000004	2.82385	0.00934678	0.00217392	0.0817766	0.043502
chr1	182844933	182845033	273033	0	+	0.43	(0.408,0.44]	chr1	31871	11	INTRON	INTRON	DHX9	ENSG00000135829.17	ENST00000367549.4:ENST00000483416.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	47	2	2.11447	2.53727	2.96007	0.0285207	0.00753901	0.12666	0.0773151
chr21	21157267	21157367	7380582	0	+	0.38	(0.378,0.408]	chr21	752602	1583	INTRON	INTRON	NCAM2	ENSG00000154654.15	ENST00000400546.6	protein_coding	protein_coding	protein_coding	protein_coding	4	58	2	1.8374	2.53724	3.23708	0.0299228	0.00365053	0.142135	0.0535094
chr3	152306044	152306144	1535359	0	+	0.44	(0.408,0.44]	chr3	159996	37	INTRON	INTRON	MBNL1	ENSG00000152601.18	ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000495875.6:ENST00000324210.10:ENST00000493459.5:ENST00000459747.1:ENST00000460591.5:ENST00000545754.5:ENST00000357472.7:ENST00000324196.9:ENST00000498502.5:ENST00000463374.5:ENST00000485910.5:ENST00000465907.6:ENST00000492948.5:ENST00000485509.5:ENST00000464596.5	protein_coding	protein_coding	protein_coding	protein_coding	6	71	2	1.78592	2.53722	3.28852	0.0142075	0.00287185	0.103638	0.0474836
chr12	28203047	28203147	5100396	0	+	0.49	(0.476,0.515]	chr12	481904	36	INTRON	INTRON	CCDC91	ENSG00000123106.11	ENST00000540794.5:ENST00000538586.5:ENST00000536154.5:ENST00000535520.5:ENST00000539107.5:ENST00000544649.5:ENST00000545336.5:ENST00000536442.6:ENST00000544780.5:ENST00000543534.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	74	2	2.41328	2.5372	2.66112	0.0044598	0.00355364	0.0592169	0.0547657
chr1	15905526	15905625	35243	0	+	0.333333	(0.32,0.35]	chr1	4272	285	INTRON	INTRON	SPEN	ENSG00000065526.12	ENST00000673875.1:ENST00000375759.8:ENST00000438066.1:ENST00000442985.1	protein_coding	protein_coding	protein_coding	protein_coding	3	55	2	1.95271	2.537085	3.12146	0.0431213	0.00630799	0.162255	0.0687526
chr12	121802690	121802784	5439502	0	-	0.382979	(0.378,0.408]	chr12	520142	13	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	RHOF:LINC01089	ENSG00000139725.8:ENSG00000212694.8	ENST00000541657.5:ENST00000545544.1:ENST00000429892.5:ENST00000542933.5:ENST00000428029.6:ENST00000541694.5:ENST00000535643.5:ENST00000536662.5:ENST00000545885.5:ENST00000538335.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA:processed_transcript	3	49	2	1.97143	2.537085	3.10274	0.0398704	0.00586642	0.161534	0.0668095
chr21	39251089	39251189	7464900	0	-	0.35	(0.32,0.35]	chr21	760482	2	SS3_PROX	SS3_PROX:INTRON	BRWD1	ENSG00000185658.14	ENST00000333229.6:ENST00000342449.8:ENST00000446924.5:ENST00000380800.7:ENST00000430093.5:ENST00000445245.5:ENST00000445668.5:ENST00000412604.1:ENST00000455867.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	55	2	1.95271	2.537085	3.12146	0.0431213	0.00630799	0.162255	0.0687526
chr18	80126522	80126621	6938263	0	+	0.333333	(0.32,0.35]	chr18	686196	85	INTRON	INTRON	ADNP2	ENSG00000101544.9	ENST00000262198.9:ENST00000560752.5:ENST00000559951.5:ENST00000560561.1:ENST00000561195.1	protein_coding	protein_coding	protein_coding	protein_coding	4	65	2	1.83315	2.53701	3.24087	0.0313348	0.00420518	0.144381	0.0572185
chr15	52031867	52031967	6029149	0	+	0.4	(0.378,0.408]	chr15	574427	36	INTRON	INTRON	MAPK6	ENSG00000069956.14	ENST00000560802.1:ENST00000691380.1:ENST00000558063.5:ENST00000560254.1:ENST00000681888.1:ENST00000261845.7:ENST00000680066.1:ENST00000680777.1:ENST00000558100.1:ENST00000680652.1:ENST00000558841.1:ENST00000558891.1:ENST00000560774.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	94	2	2.17296	2.53699	2.90102	0.0110512	3.47934e-4	0.0873897	0.0166215
chr17	36526957	36527050	6759570	0	-	0.451613	(0.44,0.476]	chr17	664570	13	INTRON	INTRON	MYO19	ENSG00000278259.5	ENST00000614623.5:ENST00000610992.4:ENST00000621550.4:ENST00000610930.4:ENST00000621344.4:ENST00000620640.4:ENST00000616159.4:ENST00000622055.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	59	2	2.18344	2.536955	2.89047	0.0102102	0.00955699	0.0863913	0.0850389
chr15	92924752	92924852	6103941	0	+	0.36	(0.35,0.378]	chr15	581415	2	SS5_PROX	SS5_PROX:INTRON	ENSG00000279765:CHD2	ENSG00000279765.3:ENSG00000173575.22	ENST00000629685.2:ENST00000630790.1:ENST00000626874.2:ENST00000394196.9:ENST00000635856.1:ENST00000420239.7:ENST00000628375.2:ENST00000625990.3:ENST00000626782.2:ENST00000629136.1:ENST00000637572.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	96	2	2.4475	2.53695	2.6264	0.0106974	5.94723e-4	0.0862205	0.0221865
chr4	82832670	82832770	2179486	0	-	0.31	(0.28,0.32]	chr4	214267	13	INTRON	INTRON	SEC31A	ENSG00000138674.17	ENST00000395310.7:ENST00000513858.5:ENST00000348405.8:ENST00000503937.5:ENST00000448323.5:ENST00000311785.11:ENST00000509142.5:ENST00000443462.6:ENST00000500777.6:ENST00000505472.5:ENST00000355196.6:ENST00000508502.5:ENST00000264405.9:ENST00000505984.5:ENST00000511338.1:ENST00000515749.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	70	2	2.02902	2.5369349999999997	3.04485	0.0174423	0.00894006	0.11269	0.0799922
chr2	113709004	113709104	1216332	0	-	0.36	(0.35,0.378]	chr2	129449	24	UTR3	UTR3:EXON_MRNA:INTRON	SLC35F5	ENSG00000115084.15	ENST00000469702.5:ENST00000245680.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	78	2	1.3743	2.53679	3.69928	0.0623871	3.94786e-4	0.175402	0.0178567
chr15	59014147	59014247	6039148	0	+	0.45	(0.44,0.476]	chr15	574979	96	INTRON	INTRON	RNF111	ENSG00000157450.16	ENST00000559757.1:ENST00000348370.9:ENST00000559160.1:ENST00000559209.5:ENST00000557998.5	protein_coding	protein_coding	protein_coding	protein_coding	5	64	2	1.60176	2.5367800000000003	3.4718	0.0389597	0.00136358	0.160861	0.0336321
chr8	100703656	100703756	4005388	0	-	0.38	(0.378,0.408]	chr8	366565	4	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	PABPC1	ENSG00000070756.17	ENST00000518293.5:ENST00000677140.1:ENST00000677787.1:ENST00000678709.1:ENST00000676662.1:ENST00000677765.1:ENST00000677892.1:ENST00000522720.2:ENST00000520804.2:ENST00000521865.6:ENST00000677478.1:ENST00000677380.1:ENST00000520142.2:ENST00000677775.1:ENST00000678954.1:ENST00000676655.1:ENST00000676976.1:ENST00000678290.1:ENST00000318607.10:ENST00000520868.5:ENST00000679197.1:ENST00000519100.6:ENST00000519004.5:ENST00000677285.1:ENST00000522387.5:ENST00000523636.5:ENST00000517990.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	12	180	2	2.32331	2.5367100000000002	2.75011	0.00189565	4.04646e-5	0.0393001	0.00516254
chr9	120442731	120442830	4332482	0	-	0.474747	(0.44,0.476]	chr9	398006	29	EXON_MRNA	EXON_MRNA:INTRON	CDK5RAP2	ENSG00000136861.19	ENST00000349780.9:ENST00000360190.8:ENST00000687279.1:ENST00000687633.1:ENST00000684780.1:ENST00000687311.1:ENST00000479584.2:ENST00000690814.1:ENST00000686842.1:ENST00000693714.1:ENST00000693386.1:ENST00000692746.1:ENST00000686376.1:ENST00000692155.1:ENST00000690646.1:ENST00000693433.1:ENST00000688923.1:ENST00000473282.6:ENST00000480112.5:ENST00000685866.1:ENST00000689688.1:ENST00000416449.6:ENST00000691504.1:ENST00000425647.1:ENST00000360822.8:ENST00000693728.1:ENST00000483412.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	48	2	1.85146	2.53669	3.22192	0.0545846	0.00360821	0.182529	0.0533855
chr7	152280530	152280629	3679727	0	-	0.454545	(0.44,0.476]	chr7	341617	63	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000684262.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	90	2	2.2193	2.5366850000000003	2.85407	0.00896114	4.30929e-4	0.0800073	0.018618
chr1	1800247	1800347	361919	0	-	0.32	(0.28,0.32]	chr1	42263	62	INTRON	INTRON	GNB1	ENSG00000078369.18	ENST00000610897.4:ENST00000615252.4:ENST00000378609.9:ENST00000471354.1:ENST00000439272.6:ENST00000434686.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	115	2	2.23223	2.53665	2.84107	0.0109124	6.40806e-4	0.0873034	0.0228915
chr6	26133980	26134080	2837092	0	+	0.42	(0.408,0.44]	chr6	266010	89	INTRON	INTRON	H2AC6	ENSG00000180573.10	ENST00000314088.6:ENST00000602637.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	17	209	2	2.03012	2.53657	3.04302	6.05657e-4	8.76557e-5	0.0223951	0.0084151
chr1	26762819	26762872	51849	0	+	0.45283	(0.44,0.476]	chr1	6586	1	SS3_PROX	SS3_PROX:INTRON	ARID1A	ENSG00000117713.21	ENST00000430799.7:ENST00000324856.13:ENST00000457599.6:ENST00000374152.7:ENST00000636219.1:ENST00000636958.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	46	2	2.21079	2.53655	2.86231	0.0194581	0.012214	0.119831	0.0910127
chr10	133413412	133413511	4540413	0	+	0.464646	(0.44,0.476]	chr10	419095	103	INTRON	INTRON	MTG1	ENSG00000148824.19	ENST00000477902.6:ENST00000317502.11:ENST00000432508.3:ENST00000460848.5:ENST00000473735.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	46	2	2.21079	2.53655	2.86231	0.0194581	0.012214	0.119831	0.0910127
chr12	26937235	26937314	5298730	0	-	0.518987	(0.515,0.57]	chr12	504055	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	INTS13	ENSG00000064102.15	ENST00000261191.12:ENST00000544548.5:ENST00000538727.5:ENST00000537336.1	protein_coding	protein_coding	protein_coding	protein_coding	4	48	2	1.81744	2.536455	3.25547	0.031028	0.00261721	0.143457	0.0455413
chr3	4980795	4980891	1353521	0	+	0.427083	(0.408,0.44]	chr3	142333	4	SS5_PROX	SS5_PROX:INTRON	BHLHE40	ENSG00000134107.5	ENST00000256495.4:ENST00000467610.1:ENST00000460806.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	94	2	2.48667	2.536455	2.58624	0.0273686	3.18514e-4	0.123904	0.0159645
chr3	172044317	172044417	1559590	0	+	0.29	(0.28,0.32]	chr3	161523	33	INTRON	INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000421757.5:ENST00000469491.5:ENST00000336824.8:ENST00000423424.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	61	2	2.32871	2.536445	2.74418	0.0581621	0.00328589	0.167723	0.0527031
chr7	121150842	121150942	3395277	0	+	0.57	(0.515,0.57]	chr7	317781	8	INTRON	INTRON	CPED1	ENSG00000106034.18	ENST00000310396.10:ENST00000450913.6:ENST00000423795.5:ENST00000466055.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	116	2	2.08725	2.53644	2.98563	0.00190567	1.77567e-4	0.0394579	0.0116289
chr6	7132457	7132556	2798610	0	+	0.454545	(0.44,0.476]	chr6	263723	234	INTRON	INTRON	RREB1	ENSG00000124782.21	ENST00000379933.7:ENST00000491191.5:ENST00000471433.5:ENST00000379938.7:ENST00000467782.5:ENST00000349384.10:ENST00000334984.10:ENST00000475946.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	130	2	2.52598	2.5364250000000004	2.54687	0.0011	4.52247e-4	0.030486	0.0192381
chr22	16798272	16798372	7546382	0	-	0.41	(0.408,0.44]	chr22	771315	135	INTRON	INTRON	XKR3	ENSG00000172967.8	ENST00000331428.5:ENST00000684488.1	protein_coding	protein_coding	protein_coding	protein_coding	7	97	2	1.82275	2.53641	3.25007	0.0123226	3.61891e-4	0.097243	0.0176126
chr4	78807272	78807371	1981694	0	+	0.333333	(0.32,0.35]	chr4	198463	302	INTRON	INTRON	BMP2K	ENSG00000138756.19	ENST00000389010.7:ENST00000502613.3:ENST00000502871.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	54	2	1.99307	2.53641	3.07975	0.04271	0.00554235	0.148082	0.0674105
chr2	230714957	230715057	1030180	0	+	0.3	(0.28,0.32]	chr2	110002	5	INTRON	INTRON	CAB39	ENSG00000135932.12	ENST00000258418.10:ENST00000409788.7:ENST00000410084.7	protein_coding	protein_coding	protein_coding	protein_coding	4	70	2	2.06884	2.5363949999999997	3.00395	0.0152581	0.0101329	0.108569	0.0850389
chr9	130756354	130756454	4214288	0	+	0.35	(0.32,0.35]	chr9	386427	415	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000393293.4	protein_coding	protein_coding	protein_coding	protein_coding	5	89	2	2.36223	2.53638	2.71053	0.00625472	0.00346747	0.0684171	0.0539802
chr6	34389963	34390063	3084747	0	-	0.46	(0.44,0.476]	chr6	288633	476	INTRON	INTRON	NUDT3:RPS10-NUDT3	ENSG00000272325.2:ENSG00000270800.3	ENST00000607016.2:ENST00000639725.1:ENST00000639877.1:ENST00000605528.2	protein_coding	protein_coding	protein_coding	protein_coding	7	95	2	1.75999	2.53637	3.31275	0.0176116	1.73222e-4	0.105143	0.0114086
chr10	119574574	119574673	4705788	0	-	0.212121	[0,0.28]	chr10	434177	29	UTR3	UTR3:EXON_MRNA	TIAL1	ENSG00000151923.18	ENST00000369093.6:ENST00000436547.7	protein_coding	protein_coding	protein_coding	protein_coding	5	109	2	2.37401	2.53635	2.69869	0.00643225	0.00568456	0.0697113	0.0678837
chr9	137620568	137620667	4223487	0	+	0.545455	(0.515,0.57]	chr9	388152	1	INTRON	INTRON	EHMT1	ENSG00000181090.21	ENST00000462484.5:ENST00000371394.6:ENST00000630754.2:ENST00000460843.6:ENST00000626216.2:ENST00000637593.1:ENST00000629335.2:ENST00000637335.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	40	2	1.9459	2.536265	3.12663	0.0429089	0.00374498	0.148082	0.0562234
chr18	687942	688032	6939519	0	-	0.444444	(0.44,0.476]	chr18	686404	4	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:INTRON	ENOSF1	ENSG00000132199.20	ENST00000647584.2:ENST00000383578.7:ENST00000584259.6:ENST00000340116.12:ENST00000581475.5:ENST00000580982.5:ENST00000585128.6:ENST00000583973.5:ENST00000584453.5:ENST00000578651.5:ENST00000577334.5:ENST00000585004.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	13	178	2	2.15961	2.5362349999999996	2.91286	9.92499e-4	1.07786e-4	0.028873	0.00878438
chr5	78135274	78135373	2649537	0	-	0.212121	[0,0.28]	chr5	251700	56	INTRON	INTRON	AP3B1	ENSG00000132842.15	ENST00000519295.6:ENST00000255194.11:ENST00000695515.1:ENST00000695454.1:ENST00000695511.1:ENST00000695453.1:ENST00000695455.1:ENST00000695513.1:ENST00000695488.1:ENST00000695450.1:ENST00000695507.1:ENST00000695512.1:ENST00000695510.1:ENST00000695451.1:ENST00000695447.1:ENST00000695505.1:ENST00000519888.6:ENST00000695514.1:ENST00000517940.2:ENST00000517561.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	68	2	2.44242	2.536135	2.62985	0.0491024	0.00581422	0.155269	0.068681
chr1	37579346	37579446	424410	0	-	0.53	(0.515,0.57]	chr1	51337	24	INTRON	INTRON	GNL2	ENSG00000134697.13	ENST00000373062.8:ENST00000538069.2:ENST00000469191.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	40	2	2.08547	2.53612	2.98677	0.0289426	0.00632549	0.1274	0.0722266
chr1	113124598	113124698	188633	0	+	0.4	(0.378,0.408]	chr1	20954	6	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	LRIG2	ENSG00000198799.12	ENST00000361127.6:ENST00000492207.5:ENST00000466161.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	134	2	1.51347	2.53604	3.55861	0.0322039	6.83866e-6	0.132543	0.00186153
chr18	807419	807519	6940658	0	-	0.53	(0.515,0.57]	chr18	686527	94	INTRON	INTRON	YES1	ENSG00000176105.14	ENST00000584307.5:ENST00000314574.5:ENST00000577611.1:ENST00000581960.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	132	2	1.59202	2.536015	3.48001	0.0104228	1.20433e-5	0.0902296	0.00276023
chr1	25446761	25446832	48105	0	+	0.43662	(0.408,0.44]	chr1	5922	1	CDS	CDS:EXON_MRNA	MACO1	ENSG00000204178.11	ENST00000399766.7:ENST00000374343.5:ENST00000647928.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	103	2	2.50424	2.5359999999999996	2.56776	0.00227507	0.00101099	0.0426265	0.0293364
chr9	130773354	130773454	4214458	0	+	0.34	(0.32,0.35]	chr9	386427	585	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000393293.4	protein_coding	protein_coding	protein_coding	protein_coding	5	93	2	1.93031	2.53593	3.14155	0.0231421	8.11889e-4	0.126939	0.0263656
chr2	111879654	111879745	1214841	0	-	0.472527	(0.44,0.476]	chr2	129231	3	INTRON	INTRON	ANAPC1	ENSG00000153107.13	ENST00000341068.8:ENST00000451367.3:ENST00000628342.1:ENST00000489177.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	35	2	2.39604	2.53588	2.67572	0.0404291	0.0212064	0.161534	0.113017
chr6	83037917	83038016	3145252	0	-	0.464646	(0.44,0.476]	chr6	293195	20	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	UBE3D	ENSG00000118420.17	ENST00000369747.8:ENST00000237186.10:ENST00000509102.5:ENST00000430071.6:ENST00000369746.2:ENST00000505226.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	35	2	2.39604	2.53588	2.67572	0.0404291	0.0212064	0.161534	0.113017
chr7	100327348	100327442	3586684	0	-	0.457447	(0.44,0.476]	chr7	334342	2	EXON_LNCRNA	EXON_LNCRNA:INTRON	PMS2P1	ENSG00000078319.11	ENST00000685724.1:ENST00000692351.1:ENST00000685541.1:ENST00000676200.2:ENST00000675162.2:ENST00000686838.1:ENST00000676241.1:ENST00000674981.1:ENST00000691424.1:ENST00000689817.1:ENST00000675610.2:ENST00000685901.1:ENST00000687177.1:ENST00000686797.1:ENST00000686203.1:ENST00000687616.1:ENST00000689267.1:ENST00000691905.1:ENST00000688544.1:ENST00000692261.1:ENST00000693192.1:ENST00000693215.1:ENST00000691707.1:ENST00000691275.1:ENST00000692687.1:ENST00000689609.1:ENST00000685852.1:ENST00000691910.1:ENST00000676204.1:ENST00000689000.1:ENST00000693042.1:ENST00000690446.1:ENST00000676274.2:ENST00000685473.1:ENST00000693010.1:ENST00000687801.1:ENST00000689447.1:ENST00000674842.2:ENST00000688104.1:ENST00000686890.1:ENST00000675639.2:ENST00000693302.1:ENST00000676155.2:ENST00000691428.1:ENST00000691046.1:ENST00000691816.1:ENST00000685670.1:ENST00000693490.1:ENST00000685700.1:ENST00000692947.1:ENST00000689907.1:ENST00000691110.1:ENST00000685499.1:ENST00000689019.1:ENST00000689719.1:ENST00000690988.1:ENST00000676256.1:ENST00000687713.1:ENST00000691247.1:ENST00000685805.1:ENST00000685342.1:ENST00000691107.1:ENST00000674972.2:ENST00000431037.4:ENST00000686569.1:ENST00000692675.1:ENST00000686594.1:ENST00000692231.1:ENST00000690914.1:ENST00000685607.1:ENST00000687053.1:ENST00000689538.1:ENST00000691660.1:ENST00000675620.2:ENST00000687026.1:ENST00000692752.1:ENST00000675640.2:ENST00000686825.1:ENST00000691842.1:ENST00000676269.2	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript:transcribed_unprocessed_pseudogene	2	35	2	2.39604	2.53588	2.67572	0.0404291	0.0212064	0.161534	0.113017
chr9	92312236	92312332	4287519	0	-	0.46875	(0.44,0.476]	chr9	394338	6	INTRON	INTRON	NOL8	ENSG00000198000.12	ENST00000442668.7:ENST00000358855.8:ENST00000545444.5:ENST00000536593.5:ENST00000545558.5:ENST00000360868.7:ENST00000544867.5:ENST00000542053.5:ENST00000535387.5:ENST00000432670.6:ENST00000434228.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	35	2	2.39604	2.53588	2.67572	0.0404291	0.0212064	0.161534	0.113017
chr6	37850999	37851099	2857345	0	+	0.47	(0.44,0.476]	chr6	270225	306	INTRON	INTRON	ZFAND3	ENSG00000156639.12	ENST00000287218.9:ENST00000373391.6:ENST00000474522.5	protein_coding	protein_coding	protein_coding	protein_coding	11	144	2	2.25255	2.5358799999999997	2.81921	7.10539e-4	5.31754e-4	0.0243894	0.020805
chr1	109376284	109376384	520803	0	-	0.44	(0.408,0.44]	chr1	61195	63	INTRON	INTRON	SORT1	ENSG00000134243.12	ENST00000538502.5:ENST00000256637.8:ENST00000493736.5:ENST00000482236.5:ENST00000633956.1:ENST00000471996.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	75	2	2.53313	2.53587	2.53861	0.00739595	0.00202413	0.074277	0.0416117
chr4	1730686	1730786	1910226	0	+	0.6	(0.57,1]	chr4	191582	4	SS3_PROX	SS3_PROX:INTRON	TACC3	ENSG00000013810.21	ENST00000651472.1:ENST00000612220.5:ENST00000484651.5:ENST00000313288.9:ENST00000652770.1:ENST00000651251.1:ENST00000650779.1:ENST00000470136.2:ENST00000651817.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	13	95	2	2.33715	2.5358549999999997	2.73456	3.0658e-4	3.54832e-5	0.0161362	0.00476468
chr7	72901588	72901688	3330014	0	+	0.49	(0.476,0.515]	chr7	309565	101	INTRON	INTRON	POM121	ENSG00000196313.13	ENST00000627934.3:ENST00000395270.5	protein_coding	protein_coding	protein_coding	protein_coding	6	86	2	2.48917	2.53585	2.58253	0.00600101	0.00110233	0.0674604	0.03038
chr1	15618208	15618308	33485	0	+	0.34	(0.32,0.35]	chr1	4077	4	SS5_PROX	SS5_PROX:INTRON	DDI2	ENSG00000197312.12	ENST00000480945.6:ENST00000486680.1:ENST00000546927.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	67	2	2.43956	2.53583	2.6321	0.0268	0.00352597	0.123349	0.0546236
chr2	47885233	47885333	1115911	0	-	0.45	(0.44,0.476]	chr2	119690	190	INTRON	INTRON	FBXO11	ENSG00000138081.22	ENST00000684712.1:ENST00000682451.1:ENST00000403359.8:ENST00000402508.5:ENST00000683894.1:ENST00000681999.1:ENST00000682975.1:ENST00000684085.1:ENST00000492225.5:ENST00000424163.2:ENST00000480038.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	87	2	2.20714	2.53583	2.86452	0.00493236	0.00159222	0.061186	0.0367961
chr5	134777976	134778059	2490573	0	+	0.337349	(0.32,0.35]	chr5	237904	2	SS5_PROX	SS5_PROX:INTRON	DDX46	ENSG00000145833.16	ENST00000628477.2:ENST00000452510.7:ENST00000507392.5:ENST00000354283.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	137	2	1.69462	2.5358099999999997	3.377	0.0249051	2.97389e-5	0.12011	0.00433808
chr7	112460090	112460185	3381884	0	+	0.263158	[0,0.28]	chr7	316789	7	INTRON	INTRON	IFRD1	ENSG00000006652.15	ENST00000675578.1:ENST00000621379.4:ENST00000005558.8:ENST00000403825.8:ENST00000674915.1:ENST00000674887.1:ENST00000675041.1:ENST00000675717.1:ENST00000535603.5:ENST00000466459.5:ENST00000486688.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	122	2	1.70667	2.53578	3.36489	0.0140108	0.00388509	0.102657	0.0544269
chr6	3000767	3000867	2787855	0	+	0.54	(0.515,0.57]	chr6	263215	4	SS5_PROX	SS5_PROX:INTRON	NQO2	ENSG00000124588.22	ENST00000426637.5:ENST00000380472.7:ENST00000380455.11:ENST00000397717.7:ENST00000338130.7:ENST00000380441.5:ENST00000380454.8:ENST00000380430.6	protein_coding	protein_coding	protein_coding	protein_coding	9	111	2	2.32131	2.5357700000000003	2.75023	0.00139342	2.30309e-4	0.0340865	0.0133889
chr14	23069917	23070017	5842720	0	-	0.48	(0.476,0.515]	chr14	555610	3	SS3_PROX	SS3_PROX:INTRON	ACIN1	ENSG00000100813.15	ENST00000605057.6:ENST00000557515.5:ENST00000262710.5:ENST00000457657.5:ENST00000357481.6:ENST00000338631.10:ENST00000397341.7:ENST00000555053.5:ENST00000555566.1:ENST00000553721.5:ENST00000557432.2:ENST00000555352.2:ENST00000553501.1:ENST00000554979.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	47	2	2.48527	2.53571	2.58615	0.03496	0.00515536	0.13747500000000001	0.0650394
chr1	23072597	23072697	44306	0	+	0.46	(0.44,0.476]	chr1	5311	4	SS5_PROX	SS5_PROX:INTRON	KDM1A	ENSG00000004487.18	ENST00000692214.1:ENST00000686934.1:ENST00000689853.1:ENST00000465864.2:ENST00000691256.1:ENST00000688122.1:ENST00000692056.1:ENST00000692853.1:ENST00000689366.1:ENST00000686270.1:ENST00000685102.1:ENST00000690627.1:ENST00000686771.1:ENST00000692209.1:ENST00000686339.1:ENST00000691813.1:ENST00000693156.1:ENST00000688235.1:ENST00000692975.1:ENST00000687202.1:ENST00000691682.1:ENST00000691404.1:ENST00000691694.1:ENST00000688680.1:ENST00000356634.7:ENST00000400181.9:ENST00000689677.1:ENST00000686793.1:ENST00000689971.1:ENST00000688943.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	125	2	2.42581	2.5356899999999998	2.64557	0.00158432	4.50427e-4	0.0363089	0.0192381
chr1	204555141	204555241	297820	0	+	0.52	(0.515,0.57]	chr1	34331	56	UTR3	UTR3:EXON_MRNA	MDM4	ENSG00000198625.14	ENST00000367183.7:ENST00000391947.6:ENST00000454264.6:ENST00000612738.4:ENST00000614459.4:ENST00000616250.4:ENST00000367182.8	protein_coding	protein_coding	protein_coding	protein_coding	9	111	2	2.42476	2.5356899999999998	2.64662	6.76573e-4	5.1273e-4	0.0236287	0.0208667
chr22	19489462	19489562	7476931	0	+	0.35	(0.32,0.35]	chr22	762407	51	INTRON	INTRON	CDC45	ENSG00000093009.11	ENST00000407835.6:ENST00000437685.6:ENST00000483431.5:ENST00000438587.6:ENST00000672837.1:ENST00000263201.7:ENST00000404724.7:ENST00000487669.5:ENST00000428937.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	101	2	2.02327	2.53568	3.04809	0.00956045	0.00120984	0.0863913	0.0317954
chr12	124783781	124783878	5445765	0	-	0.268041	[0,0.28]	chr12	521219	11	EXON_MRNA	EXON_MRNA:INTRON	SCARB1	ENSG00000073060.17	ENST00000339570.9:ENST00000261693.11:ENST00000679605.1:ENST00000681686.1:ENST00000680926.1:ENST00000680556.1:ENST00000680982.1:ENST00000680596.1:ENST00000681555.1:ENST00000681788.1:ENST00000415380.6:ENST00000681117.1:ENST00000681499.1:ENST00000545305.1:ENST00000538291.5:ENST00000546215.5:ENST00000535005.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	153	2	2.28734	2.53564	2.78394	0.00414216	0.00181034	0.0589205	0.0384016
chr1	26706430	26706530	51275	0	+	0.46	(0.44,0.476]	chr1	6542	85	INTRON	INTRON	ARID1A	ENSG00000117713.21	ENST00000430799.7:ENST00000324856.13:ENST00000637465.1:ENST00000457599.6	protein_coding	protein_coding	protein_coding	protein_coding	9	131	2	2.33785	2.5356199999999998	2.73339	0.00284182	1.37991e-4	0.0473478	0.0101125
chr11	63843822	63843921	4800917	0	+	0.424242	(0.408,0.44]	chr11	445032	39	INTRON	INTRON	MARK2	ENSG00000072518.22	ENST00000377810.8:ENST00000361128.9:ENST00000508192.5:ENST00000350490.11:ENST00000402010.8:ENST00000502399.7:ENST00000425897.3:ENST00000679216.1:ENST00000513765.7	protein_coding	protein_coding	protein_coding	protein_coding	4	58	2	2.04611	2.5356199999999998	3.02513	0.016628	0.0059965	0.102621	0.0700606
chr18	73251374	73251464	6988488	0	-	0.211111	[0,0.28]	chr18	691708	3	INTRON	INTRON	LINC02864	ENSG00000263711.6	ENST00000584544.5:ENST00000581011.5:ENST00000581862.6:ENST00000669547.1:ENST00000661525.1:ENST00000583405.5:ENST00000582571.2	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	3	67	2	2.52489	2.535565	2.54624	0.0388449	0.0084136	0.143072	0.082518
chr7	158747395	158747494	3688979	0	-	0.282828	(0.28,0.32]	chr7	342335	33	INTRON	INTRON	ESYT2	ENSG00000117868.18	ENST00000251527.10:ENST00000275418.13:ENST00000652148.1	protein_coding	protein_coding	protein_coding	protein_coding	5	95	2	2.38504	2.53553	2.68602	0.0055712	0.00475871	0.0649112	0.0636201
chr1	11082133	11082233	376712	0	-	0.55	(0.515,0.57]	chr1	44015	2	SS5_PROX	SS5_PROX:INTRON	EXOSC10	ENSG00000171824.14	ENST00000304457.11:ENST00000376936.9:ENST00000485606.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	30	2	2.23915	2.535515	2.83188	0.0596178	0.0108207	0.16883600000000001	0.0920575
chr1	215569251	215569350	314194	0	+	0.525253	(0.515,0.57]	chr1	36190	11	INTRON	INTRON	KCTD3	ENSG00000136636.13	ENST00000259154.9	protein_coding	protein_coding	protein_coding	protein_coding	2	30	2	2.23915	2.535515	2.83188	0.0596178	0.0108207	0.16883600000000001	0.0920575
chr3	48051296	48051396	1687124	0	-	0.52	(0.515,0.57]	chr3	172280	350	INTRON	INTRON	MAP4	ENSG00000047849.22	ENST00000395734.7:ENST00000426837.6:ENST00000360240.10:ENST00000423088.5:ENST00000439356.2:ENST00000468075.2	protein_coding	protein_coding	protein_coding	protein_coding	2	30	2	2.23915	2.535515	2.83188	0.0596178	0.0108207	0.16883600000000001	0.0920575
chr5	179826317	179826416	2561712	0	+	0.525253	(0.515,0.57]	chr5	245049	7	INTRON	INTRON	SQSTM1	ENSG00000161011.20	ENST00000389805.9:ENST00000510187.5:ENST00000360718.5:ENST00000466342.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	30	2	2.23915	2.535515	2.83188	0.0596178	0.0108207	0.16883600000000001	0.0920575
chr19	11827740	11827840	7019037	0	+	0.4	(0.378,0.408]	chr19	697804	1	SS5_PROX	SS5_PROX:INTRON	ZNF440	ENSG00000171295.13	ENST00000304060.10:ENST00000457526.1:ENST00000427505.5:ENST00000588954.5	protein_coding	protein_coding	protein_coding	protein_coding	3	49	2	2.21238	2.53546	2.85854	0.0218124	0.0107837	0.11491	0.0920575
chr3	195372435	195372535	1895205	0	-	0.53	(0.515,0.57]	chr3	189674	143	INTRON	INTRON	ACAP2	ENSG00000114331.16	ENST00000326793.11:ENST00000635383.1:ENST00000480906.5:ENST00000481463.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	54	2	2.39351	2.5354200000000002	2.67733	0.0100431	0.00366712	0.0881096	0.0535094
chr4	1893629	1893729	1910796	0	+	0.52	(0.515,0.57]	chr4	191723	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	NSD2	ENSG00000109685.19	ENST00000508803.6:ENST00000507820.5:ENST00000508355.5:ENST00000514045.5:ENST00000515806.1:ENST00000398261.6:ENST00000382891.9:ENST00000353275.9:ENST00000382892.6:ENST00000382895.7:ENST00000312087.10:ENST00000420906.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	54	2	2.39351	2.5354200000000002	2.67733	0.0100431	0.00366712	0.0881096	0.0535094
chr22	40044816	40044907	7516846	0	+	0.56044	(0.515,0.57]	chr22	768078	1	UTR5	UTR5:EXON_MRNA	TNRC6B	ENSG00000100354.21	ENST00000301923.13:ENST00000441751.5	protein_coding	protein_coding	protein_coding	protein_coding	13	155	2	2.50162	2.5353849999999998	2.56915	3.80744e-4	9.25945e-5	0.0181283	0.00805483
chr1	11909807	11909867	378957	0	-	0.316667	(0.28,0.32]	chr1	44497	1	EXON_SMALL	EXON_SMALL	RNU5E-4P	ENSG00000201801.1	ENST00000364931.1	snRNA	snRNA	snRNA	snRNA	167	2998	2	2.37345	2.535285	2.69712	5.77876e-5	1.23707e-6	0.00664874	6.48319e-4
chr6	17672522	17672621	3065864	0	-	0.474747	(0.44,0.476]	chr6	284852	26	INTRON	INTRON	NUP153	ENSG00000124789.12	ENST00000613258.4:ENST00000537253.5:ENST00000262077.3	protein_coding	protein_coding	protein_coding	protein_coding	14	198	2	2.4676	2.5352449999999997	2.60289	5.32996e-4	6.32123e-5	0.0213454	0.00658818
chr10	21569381	21569481	4404766	0	+	0.48	(0.476,0.515]	chr10	406446	112	INTRON	INTRON	MLLT10	ENSG00000078403.17	ENST00000651097.1:ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000650772.1:ENST00000651298.1:ENST00000495130.5:ENST00000377059.7:ENST00000476557.5:ENST00000462999.5:ENST00000430455.2:ENST00000479634.1:ENST00000480415.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	70	2	1.61324	2.535175	3.45711	0.026684	0.00140905	0.134419	0.0340865
chr2	26115785	26115884	713919	0	+	0.333333	(0.32,0.35]	chr2	82453	55	INTRON	INTRON	RAB10	ENSG00000084733.11	ENST00000264710.5:ENST00000495146.5:ENST00000473035.1:ENST00000462003.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	67	2	1.61669	2.53515	3.45361	0.0578816	0.00193809	0.188651	0.0399255
chr19	16081726	16081819	7026025	0	+	0.473118	(0.44,0.476]	chr19	699188	8	EXON_MRNA	EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TPM4	ENSG00000167460.17	ENST00000646974.2:ENST00000586499.6:ENST00000647464.2:ENST00000668959.1:ENST00000590180.3:ENST00000655004.1:ENST00000642789.1:ENST00000653979.1:ENST00000645471.1:ENST00000659595.1:ENST00000647037.1:ENST00000587201.6:ENST00000643579.2:ENST00000586193.6:ENST00000643494.1:ENST00000670382.1:ENST00000300933.9:ENST00000646575.1:ENST00000586833.7:ENST00000642221.1:ENST00000658224.1:ENST00000344824.11:ENST00000588410.2:ENST00000657915.1:ENST00000588483.2:ENST00000592138.6:ENST00000664983.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	75	2	1.94723	2.535105	3.12298	0.0227424	4.66209e-4	0.117618	0.0195589
chr22	49481096	49481196	7600890	0	-	0.48	(0.476,0.515]	chr22	778566	395	INTRON	INTRON	MIR3667HG	ENSG00000188511.13	ENST00000414287.5:ENST00000416411.1	lncRNA	lncRNA	lncRNA	lncRNA	3	47	2	1.91817	2.535095	3.15202	0.0459211	0.00455841	0.164984	0.0595107
chr8	116735745	116735844	4034030	0	-	0.474747	(0.44,0.476]	chr8	368072	10	INTRON	INTRON	EIF3H	ENSG00000147677.12	ENST00000521861.6:ENST00000276682.8:ENST00000518949.5:ENST00000518995.5:ENST00000522800.5:ENST00000518034.5:ENST00000517974.1:ENST00000522453.1:ENST00000519046.5:ENST00000520813.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	86	2	2.00793	2.535075	3.06222	0.00937685	8.483e-4	0.0859966	0.0267232
chr2	47885532	47885632	1115914	0	-	0.39	(0.378,0.408]	chr2	119690	193	INTRON	INTRON	FBXO11	ENSG00000138081.22	ENST00000684712.1:ENST00000682451.1:ENST00000403359.8:ENST00000402508.5:ENST00000683894.1:ENST00000681999.1:ENST00000682975.1:ENST00000684085.1:ENST00000492225.5:ENST00000424163.2:ENST00000480038.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	95	2	2.06535	2.535025	3.0047	0.0159849	1.9857e-4	0.101453	0.0122787
chr1	93090191	93090291	162648	0	+	0.53	(0.515,0.57]	chr1	17567	88	INTRON	INTRON	MTF2	ENSG00000143033.18	ENST00000540243.5:ENST00000545708.5:ENST00000474314.6:ENST00000370298.9:ENST00000473430.5:ENST00000494963.5:ENST00000471953.5:ENST00000370303.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	30	2	2.46104	2.535015	2.60899	0.032841	0.0232669	0.145164	0.118148
chr6	43637838	43637937	2872024	0	+	0.545455	(0.515,0.57]	chr6	272333	8	INTRON	INTRON	MAD2L1BP	ENSG00000124688.14	ENST00000451025.6:ENST00000372171.5	protein_coding	protein_coding	protein_coding	protein_coding	2	30	2	2.46104	2.535015	2.60899	0.032841	0.0232669	0.145164	0.118148
chr14	55067211	55067311	5725534	0	+	0.22	[0,0.28]	chr14	543395	27	UTR3	UTR3:EXON_MRNA:INTRON	MAPK1IP1L	ENSG00000168175.15	ENST00000395468.9:ENST00000622254.1	protein_coding	protein_coding	protein_coding	protein_coding	4	80	2	1.91898	2.535	3.15102	0.0266433	0.00767596	0.134413	0.0753665
chr18	749114	749214	6940068	0	-	0.42	(0.408,0.44]	chr18	686497	7	INTRON	INTRON	YES1	ENSG00000176105.14	ENST00000584307.5:ENST00000314574.5:ENST00000577961.5	protein_coding	protein_coding	protein_coding	protein_coding	6	86	2	1.87932	2.5349850000000003	3.19065	0.0172104	3.2984e-4	0.104099	0.0161352
chr7	149614803	149614903	3672524	0	-	0.4	(0.378,0.408]	chr7	340834	508	INTRON	INTRON	ZNF767P	ENSG00000133624.14	ENST00000463567.5:ENST00000472212.5:ENST00000684939.1:ENST00000690388.1:ENST00000486492.5:ENST00000481762.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	7	107	2	2.37969	2.53496	2.69023	0.00190547	0.00140735	0.0403738	0.0340865
chr16	21180230	21180326	6318908	0	+	0.46875	(0.44,0.476]	chr16	604897	8	UTR3	UTR3:EXON_MRNA	LDAF1	ENSG00000011638.11	ENST00000233047.9:ENST00000261388.7:ENST00000573688.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	13	181	2	2.33627	2.534955	2.73364	3.27769e-4	2.19749e-4	0.0160995	0.0135522
chr14	21254046	21254146	5835012	0	-	0.38	(0.378,0.408]	chr14	554460	1	SS5_PROX	SS5_PROX:INTRON	HNRNPC	ENSG00000092199.19	ENST00000336053.10:ENST00000553300.6:ENST00000554969.5:ENST00000556142.5:ENST00000554455.5:ENST00000430246.6:ENST00000553753.5:ENST00000555309.5:ENST00000555914.5:ENST00000557442.5:ENST00000556628.5:ENST00000556513.5:ENST00000555883.5:ENST00000557201.5:ENST00000556897.5:ENST00000420743.6:ENST00000554539.5:ENST00000554383.5:ENST00000555215.5:ENST00000555137.5:ENST00000554891.5:ENST00000556226.5:ENST00000555176.5:ENST00000553614.5:ENST00000557336.1:ENST00000557768.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	15	199	2	1.6416	2.5347999999999997	3.428	0.0087509	4.20157e-6	0.0788605	0.00136728
chr21	37448649	37448748	7407048	0	+	0.363636	(0.35,0.378]	chr21	754891	179	INTRON	INTRON	DYRK1A	ENSG00000157540.22	ENST00000646523.1:ENST00000647425.1:ENST00000647188.2:ENST00000647504.1:ENST00000644942.1:ENST00000338785.8:ENST00000643624.1:ENST00000643551.1:ENST00000426672.6:ENST00000398960.7:ENST00000646548.1:ENST00000645424.1:ENST00000643854.1:ENST00000455097.6:ENST00000642309.1:ENST00000645774.1:ENST00000398956.2	protein_coding	protein_coding	protein_coding	protein_coding	6	93	2	2.33792	2.53478	2.73164	0.00387645	0.0024225	0.0543578	0.0454587
chr10	68339655	68339755	4440843	0	+	0.43	(0.408,0.44]	chr10	409499	1	SS5_PROX	SS5_PROX:INTRON	HNRNPH3	ENSG00000096746.18	ENST00000469172.5:ENST00000265866.12:ENST00000480987.5:ENST00000354695.5:ENST00000481819.5:ENST00000491200.5:ENST00000490442.5:ENST00000478698.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	169	2	2.47849	2.53476	2.59103	0.00155132	6.80517e-5	0.0358745	0.00684225
chr10	125158134	125158234	4714319	0	-	0.31	(0.28,0.32]	chr10	434934	1	SS5_PROX	SS5_PROX:INTRON	CTBP2	ENSG00000175029.17	ENST00000337195.9:ENST00000411419.6:ENST00000494626.6:ENST00000531469.5:ENST00000460976.5:ENST00000476817.1:ENST00000530884.1:ENST00000467395.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	70	2	2.1076	2.534735	2.96187	0.0133585	0.0114995	0.100772	0.0889104
chr15	43481720	43481820	6161734	0	-	0.56	(0.515,0.57]	chr15	586788	3	INTRON	INTRON	TP53BP1	ENSG00000067369.14	ENST00000382044.9:ENST00000263801.7:ENST00000382039.7:ENST00000450115.6:ENST00000572085.5:ENST00000413546.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	55	2	1.53845	2.53465	3.53085	0.0475376	6.59951e-4	0.153019	0.0232396
chr19	48481441	48481538	7087719	0	+	0.391753	(0.378,0.408]	chr19	709311	24	UTR3	UTR3:EXON_MRNA	CYTH2	ENSG00000105443.16	ENST00000427476.4:ENST00000452733.7	protein_coding	protein_coding	protein_coding	protein_coding	6	89	2	1.9808	2.534445	3.08809	0.0123757	5.71831e-4	0.0916369	0.0217398
chr16	20779696	20779796	6317743	0	+	0.36	(0.35,0.378]	chr16	604610	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	ACSM3	ENSG00000005187.12	ENST00000289416.10:ENST00000440284.6:ENST00000562251.5	protein_coding	protein_coding	protein_coding	protein_coding	4	68	2	2.19034	2.534345	2.87835	0.023941	0.00160563	0.119443	0.0367961
chr2	61318591	61318672	1129006	0	-	0.358025	(0.35,0.378]	chr2	121380	5	INTRON	INTRON	USP34	ENSG00000115464.15	ENST00000398571.7	protein_coding	protein_coding	protein_coding	protein_coding	4	68	2	2.19034	2.534345	2.87835	0.023941	0.00160563	0.119443	0.0367961
chr4	102822943	102823043	2213314	0	-	0.37	(0.35,0.378]	chr4	216759	101	INTRON	INTRON	UBE2D3	ENSG00000109332.20	ENST00000453744.7:ENST00000394804.6:ENST00000394803.9:ENST00000394801.8:ENST00000343106.9:ENST00000503742.5:ENST00000321805.11:ENST00000350435.11:ENST00000338145.7:ENST00000349311.12:ENST00000504211.5:ENST00000357194.10:ENST00000505207.5:ENST00000507845.5:ENST00000502404.5:ENST00000508635.5:ENST00000505307.5:ENST00000510129.5:ENST00000508476.5:ENST00000502563.5:ENST00000508238.5:ENST00000514755.5:ENST00000508974.5:ENST00000502690.5:ENST00000508818.5:ENST00000503418.5:ENST00000508249.1:ENST00000513098.5:ENST00000503282.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	12	179	2	2.35022	2.534325	2.71843	5.87837e-4	3.47139e-4	0.0224695	0.0166033
chr5	171395273	171395372	2546644	0	+	0.454545	(0.44,0.476]	chr5	243099	19	INTRON	INTRON	NPM1	ENSG00000181163.14	ENST00000517671.5:ENST00000676613.1:ENST00000678186.1:ENST00000678267.1:ENST00000677297.1:ENST00000521672.6:ENST00000679190.1:ENST00000677467.1:ENST00000678280.1:ENST00000676625.1:ENST00000679006.1:ENST00000351986.10:ENST00000676504.1:ENST00000676589.1:ENST00000677357.1:ENST00000679233.1:ENST00000296930.10:ENST00000393820.2:ENST00000521260.2:ENST00000518587.2:ENST00000678774.1:ENST00000677600.1:ENST00000677741.1:ENST00000677325.1:ENST00000677672.1:ENST00000677907.1:ENST00000677904.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	19	257	2	2.15261	2.53428	2.91595	4.91517e-4	2.22868e-5	0.0205704	0.00368183
chr19	28517520	28517620	7166270	0	-	0.44	(0.408,0.44]	chr19	724189	493	INTRON	INTRON	ENSG00000283403:ENSG00000267243	ENSG00000283403.1:ENSG00000267243.6	ENST00000592347.5:ENST00000593065.5	lncRNA	lncRNA	lncRNA	lncRNA	7	95	2	2.08773	2.5342599999999997	2.98079	0.00404379	0.00124935	0.0578376	0.0323434
chr7	87849680	87849780	3566105	0	-	0.41	(0.408,0.44]	chr7	332305	4	SS5_PROX	SS5_PROX:INTRON	SLC25A40	ENSG00000075303.13	ENST00000341119.10:ENST00000429674.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	57	2	2.3494	2.534255	2.71911	0.0189489	0.00462504	0.108861	0.062717
chrX	154078904	154079004	7912910	0	-	0.29	(0.28,0.32]	chrX	805637	54	INTRON	INTRON	MECP2	ENSG00000169057.24	ENST00000303391.11:ENST00000453960.7:ENST00000628176.2:ENST00000407218.5:ENST00000369957.5:ENST00000631210.1:ENST00000496908.5:ENST00000415944.3:ENST00000630151.2:ENST00000676382.1:ENST00000611468.2:ENST00000637533.1:ENST00000675526.1:ENST00000637791.1:ENST00000675841.1:ENST00000674996.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	58	2	2.33771	2.53424	2.73077	0.0220748	0.0142701	0.115395	0.103838
chr7	96230017	96230117	3575333	0	-	0.3	(0.28,0.32]	chr7	333059	99	INTRON	INTRON	SLC25A13	ENSG00000004864.14	ENST00000265631.10:ENST00000416240.6:ENST00000472162.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	58	2	2.24061	2.5341500000000003	2.82769	0.0194267	0.0169391	0.119831	0.103888
chr11	65428864	65428964	4805831	0	+	0.3	(0.28,0.32]	chr11	446554	62	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	77	1217	2	2.08418	2.53415	2.98412	1.09903e-4	5.71762e-6	0.00887501	0.00177762
chr6	17604006	17604106	2826652	0	+	0.32	(0.28,0.32]	chr6	265421	9	INTRON	INTRON	FAM8A1	ENSG00000137414.7	ENST00000259963.4:ENST00000688732.1:ENST00000690940.1:ENST00000691422.1:ENST00000692803.1:ENST00000685064.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	43	2	2.32871	2.5340800000000003	2.73945	0.0581621	0.017681	0.167723	0.11319
chrX	124486708	124486808	7880206	0	-	0.31	(0.28,0.32]	chrX	802674	1	SS5_PROX	SS5_PROX:INTRON	TENM1	ENSG00000009694.13	ENST00000371130.7:ENST00000422452.2:ENST00000461429.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	43	2	2.32871	2.5340800000000003	2.73945	0.0581621	0.017681	0.167723	0.11319
chr1	213138981	213139081	311584	0	+	0.38	(0.378,0.408]	chr1	35945	87	INTRON	INTRON	RPS6KC1	ENSG00000136643.12	ENST00000615329.4:ENST00000543354.5:ENST00000614059.4:ENST00000543470.5:ENST00000366960.8:ENST00000366959.4:ENST00000490299.5:ENST00000468069.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	60	2	2.46509	2.5340249999999997	2.60296	0.0267851	0.00287152	0.123349	0.0494641
chr5	6714783	6714867	2315848	0	+	0.47619	(0.44,0.476]	chr5	224264	2	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	TENT4A	ENSG00000112941.14	ENST00000230859.8:ENST00000515721.1:ENST00000631941.2	protein_coding	protein_coding	protein_coding	protein_coding	9	130	2	2.4345	2.5339549999999997	2.63341	0.00185115	2.47449e-4	0.0388609	0.013927
chr16	81685698	81685798	6407426	0	+	0.37	(0.35,0.378]	chr16	615099	67	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5:ENST00000398040.8	protein_coding	protein_coding	protein_coding	protein_coding	3	50	2	2.34278	2.533875	2.72497	0.0198266	0.0129593	0.109608	0.0991015
chr7	96277266	96277338	3575807	0	-	0.375	(0.35,0.378]	chr7	333068	2	CDS	CDS:EXON_MRNA	SLC25A13	ENSG00000004864.14	ENST00000265631.10:ENST00000416240.6:ENST00000472162.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	50	2	2.34278	2.533875	2.72497	0.0198266	0.0129593	0.109608	0.0991015
chr1	28994140	28994239	59756	0	+	0.414141	(0.408,0.44]	chr1	7643	2	INTRON	INTRON	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000647918.1:ENST00000646800.1:ENST00000644342.1:ENST00000646189.1:ENST00000482464.6:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000646260.1:ENST00000373798.5:ENST00000644600.1:ENST00000649674.1:ENST00000643173.1:ENST00000343067.9:ENST00000644780.1:ENST00000650265.1:ENST00000648181.1:ENST00000643604.1:ENST00000648891.1:ENST00000373797.2:ENST00000349460.9:ENST00000645184.1:ENST00000645111.1:ENST00000643302.1:ENST00000645999.1:ENST00000642643.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	76	2	2.36185	2.533855	2.70586	0.0133164	9.14702e-4	0.094512	0.027804
chr19	17270531	17270625	7029491	0	+	0.542553	(0.515,0.57]	chr19	699856	11	INTRON	INTRON	BABAM1	ENSG00000105393.16	ENST00000594247.5:ENST00000447614.6:ENST00000359435.8:ENST00000599474.5:ENST00000598188.6:ENST00000601043.5:ENST00000595393.5:ENST00000599057.5:ENST00000601171.5:ENST00000596335.5:ENST00000601436.5:ENST00000448635.2:ENST00000595632.5:ENST00000601938.5:ENST00000602066.5:ENST00000598567.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	48	2	1.75372	2.5338000000000003	3.31388	0.0386904	0.00174704	0.14279	0.0386026
chr16	15685189	15685288	6307239	0	+	0.373737	(0.35,0.378]	chr16	603439	69	INTRON	INTRON	NDE1	ENSG00000072864.16	ENST00000396355.5:ENST00000674888.1:ENST00000675171.1:ENST00000675951.1:ENST00000674900.1:ENST00000674588.1:ENST00000674538.1:ENST00000396354.6:ENST00000675926.1:ENST00000573203.5:ENST00000674995.1:ENST00000674554.1:ENST00000674581.1:ENST00000577101.6:ENST00000572756.6:ENST00000574163.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	50	2	2.23043	2.53376	2.83709	0.0187487	0.01435	0.117523	0.0966737
chr6	17685907	17686007	3066003	0	-	0.48	(0.476,0.515]	chr6	284866	98	INTRON	INTRON	NUP153	ENSG00000124789.12	ENST00000613258.4:ENST00000537253.5:ENST00000262077.3	protein_coding	protein_coding	protein_coding	protein_coding	4	55	2	2.06898	2.53375	2.99852	0.0137491	0.0077575	0.10247	0.0757402
chr4	39045995	39046094	1949778	0	+	0.333333	(0.32,0.35]	chr4	195194	5	INTRON	INTRON	KLHL5	ENSG00000109790.18	ENST00000261425.7:ENST00000508137.6	protein_coding	protein_coding	protein_coding	protein_coding	3	54	2	1.83416	2.533735	3.23331	0.0631198	0.00315414	0.176946	0.0515261
chr1	244854152	244854251	672987	0	-	0.323232	(0.32,0.35]	chr1	79601	40	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	HNRNPU	ENSG00000153187.20	ENST00000475997.6:ENST00000366527.4:ENST00000649899.1:ENST00000638230.1:ENST00000640306.1:ENST00000489705.2:ENST00000640264.1:ENST00000444376.7:ENST00000640218.2:ENST00000639628.2:ENST00000440865.2:ENST00000638952.1:ENST00000638716.1:ENST00000366525.8:ENST00000639880.1:ENST00000283179.14:ENST00000638475.1:ENST00000639824.1:ENST00000468690.2:ENST00000476241.2:ENST00000640001.1:ENST00000640056.1:ENST00000639064.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	51	792	2	2.14992	2.5337199999999998	2.91752	8.39971e-5	6.3872e-6	0.00774459	0.00191413
chr10	42551246	42551345	4603840	0	-	0.535354	(0.515,0.57]	chr10	424117	8	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	ZNF37BP	ENSG00000234420.8	ENST00000452075.7:ENST00000692055.1:ENST00000689225.1:ENST00000686311.1:ENST00000686673.1:ENST00000688789.1:ENST00000690905.1:ENST00000435805.7:ENST00000687308.1:ENST00000692559.1:ENST00000690442.1:ENST00000473592.1:ENST00000691808.1:ENST00000692594.1:ENST00000691366.1:ENST00000689409.1:ENST00000685241.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	2	31	2	2.23241	2.53371	2.83501	0.0581268	0.0117686	0.188651	0.0894475
chr12	98516917	98517017	5198632	0	+	0.56	(0.515,0.57]	chr12	491794	4	SS5_PROX	SS5_PROX:INTRON	TMPO	ENSG00000120802.14	ENST00000548911.1:ENST00000556029.6:ENST00000343315.9:ENST00000266732.8:ENST00000393053.6:ENST00000546828.6:ENST00000261210.9:ENST00000549938.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	31	2	2.23241	2.53371	2.83501	0.0581268	0.0117686	0.188651	0.0894475
chr8	100710998	100711093	4005474	0	-	0.568421	(0.515,0.57]	chr8	366598	9	INTRON	INTRON	PABPC1	ENSG00000070756.17	ENST00000677140.1:ENST00000677787.1:ENST00000678709.1:ENST00000676662.1:ENST00000677765.1:ENST00000677892.1:ENST00000522720.2:ENST00000520804.2:ENST00000521865.6:ENST00000677478.1:ENST00000677380.1:ENST00000520142.2:ENST00000677775.1:ENST00000678954.1:ENST00000676655.1:ENST00000676976.1:ENST00000678290.1:ENST00000318607.10:ENST00000679197.1:ENST00000519100.6:ENST00000519004.5:ENST00000522387.5:ENST00000523636.5:ENST00000522658.6:ENST00000678822.1:ENST00000523555.6:ENST00000610907.2:ENST00000517403.5:ENST00000519596.5:ENST00000519622.5:ENST00000517921.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	31	2	2.23241	2.53371	2.83501	0.0581268	0.0117686	0.188651	0.0894475
chr8	143826628	143826728	4084050	0	-	0.55	(0.515,0.57]	chr8	371337	2	SS5_PROX	SS5_PROX:INTRON	PUF60	ENSG00000179950.14	ENST00000526683.6:ENST00000349157.10:ENST00000456095.6:ENST00000313352.11:ENST00000453551.6:ENST00000527197.5:ENST00000526459.5:ENST00000527744.5:ENST00000531951.5:ENST00000529999.5:ENST00000531897.5:ENST00000533162.1:ENST00000532127.5:ENST00000526151.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	31	2	2.23241	2.53371	2.83501	0.0581268	0.0117686	0.188651	0.0894475
chr6	33407006	33407090	2847107	0	+	0.285714	(0.28,0.32]	chr6	268694	2	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	KIFC1	ENSG00000237649.8	ENST00000428849.7:ENST00000494554.2	protein_coding	protein_coding	protein_coding	protein_coding	4	79	2	2.22069	2.5336999999999996	2.84671	0.0243177	0.00216662	0.12011	0.0434015
chr6	140415286	140415386	2970609	0	+	0.43	(0.408,0.44]	chr6	279019	998	INTRON	INTRON	ENSG00000288714	ENSG00000288714.1	ENST00000684511.1	lncRNA	lncRNA	lncRNA	lncRNA	4	57	2	1.69566	2.53364	3.37162	0.0453922	0.00208674	0.164236	0.0411801
chr13	20025357	20025453	5453103	0	+	0.416667	(0.408,0.44]	chr13	522479	11	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	ZMYM2	ENSG00000121741.17	ENST00000382874.6:ENST00000610343.5:ENST00000382871.3:ENST00000382883.7:ENST00000468677.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	22	308	2	2.48034	2.53357	2.5868	1.8103e-4	1.61097e-5	0.0122079	0.00303526
chr2	235551632	235551732	1041913	0	+	0.46	(0.44,0.476]	chr2	111222	267	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1:ENST00000402604.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	71	2	1.44993	2.533555	3.61718	0.045367	7.37432e-4	0.164236	0.02495
chr8	129394974	129395073	4059219	0	-	0.333333	(0.32,0.35]	chr8	369574	47	INTRON	INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1:ENST00000676273.1:ENST00000667643.1:ENST00000668791.1:ENST00000663716.1:ENST00000663572.1:ENST00000676148.1:ENST00000667962.1:ENST00000674877.1:ENST00000675316.1:ENST00000674656.1:ENST00000446592.7:ENST00000667341.1:ENST00000675186.1:ENST00000652971.1:ENST00000661447.1:ENST00000674863.1:ENST00000675498.1:ENST00000675527.1:ENST00000676108.1:ENST00000657647.1:ENST00000675589.1:ENST00000675913.1:ENST00000675109.1:ENST00000671632.1:ENST00000671311.1:ENST00000676099.1:ENST00000660652.1:ENST00000675522.1:ENST00000675183.1:ENST00000658861.1:ENST00000663991.1:ENST00000675044.1:ENST00000675435.1:ENST00000674639.1:ENST00000676069.1:ENST00000675532.1:ENST00000674762.1:ENST00000523151.6:ENST00000675948.1:ENST00000665364.1:ENST00000657251.1:ENST00000675166.1:ENST00000674883.1:ENST00000675867.1:ENST00000674580.1:ENST00000675393.1:ENST00000520048.1:ENST00000674906.1:ENST00000676030.1:ENST00000670588.1:ENST00000675072.1:ENST00000664936.1:ENST00000652914.1	lncRNA	lncRNA	lncRNA	lncRNA	3	54	2	2.04237	2.533535	3.0247	0.0375542	0.00671684	0.140222	0.0738715
chr2	69846944	69847042	804927	0	+	0.438776	(0.408,0.44]	chr2	89817	24	INTRON	INTRON	GMCL1	ENSG00000087338.5	ENST00000282570.4:ENST00000471404.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	76	2	2.17784	2.533485	2.88913	0.00916282	0.00185044	0.0855292	0.0388609
chr20	47216985	47217084	7348094	0	-	0.515152	(0.476,0.515]	chr20	749229	39	INTRON	INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000467200.6:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4	protein_coding	protein_coding	protein_coding	protein_coding	6	70	2	1.57103	2.53345	3.49587	0.0307896	0.00120011	0.143385	0.0315806
chr2	168872429	168872522	1259603	0	-	0.419355	(0.408,0.44]	chr2	133369	5	INTRON	INTRON	SPC25	ENSG00000152253.9	ENST00000479309.6:ENST00000282074.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	64	2	2.00961	2.53333	3.05705	0.00931007	0.00658331	0.0855292	0.0701901
chr4	126546214	126546314	2236171	0	-	0.43	(0.408,0.44]	chr4	219023	807	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	5	64	2	2.00961	2.53333	3.05705	0.00931007	0.00658331	0.0855292	0.0701901
chr13	79383906	79384006	5626186	0	-	0.41	(0.408,0.44]	chr13	536667	46	INTRON	INTRON	RBM26	ENSG00000139746.16	ENST00000438737.3:ENST00000438724.5:ENST00000622611.4:ENST00000267229.11:ENST00000472143.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	62	2	2.36073	2.533295	2.70586	0.0481658	9.14702e-4	0.153019	0.027804
chrX	110009159	110009259	7700098	0	+	0.45	(0.44,0.476]	chrX	788130	46	INTRON	INTRON	TMEM164	ENSG00000157600.12	ENST00000372072.7:ENST00000471255.5:ENST00000372073.5:ENST00000372068.7:ENST00000288381.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	56	2	1.75627	2.53319	3.31011	0.0380723	0.00259023	0.157702	0.0452934
chr3	44763475	44763574	1412235	0	+	0.515152	(0.476,0.515]	chr3	148150	12	INTRON	INTRON	KIF15	ENSG00000163808.17	ENST00000438321.5:ENST00000326047.9:ENST00000481166.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	46	2	1.99197	2.533095	3.07422	0.039572	0.00506023	0.143072	0.0646039
chr22	23187313	23187412	7483271	0	+	0.525253	(0.515,0.57]	chr22	763531	47	INTRON	INTRON	BCR	ENSG00000186716.21	ENST00000479188.5:ENST00000359540.7:ENST00000305877.13	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	53	2	2.38476	2.5330399999999997	2.68132	0.0110593	0.00324198	0.0873897	0.0524329
chr16	85603416	85603515	6415866	0	+	0.515152	(0.476,0.515]	chr16	615470	467	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	9	128	2	2.31315	2.533005	2.75286	0.00112683	7.3224e-4	0.030721	0.0246502
chr12	6596437	6596537	5259548	0	-	0.53	(0.515,0.57]	chr12	500793	3	SS3_PROX	SS3_PROX:INTRON	CHD4	ENSG00000111642.16	ENST00000645022.1:ENST00000544040.7:ENST00000544484.6:ENST00000357008.7:ENST00000642810.1:ENST00000643335.1:ENST00000643815.1:ENST00000646806.1:ENST00000644137.1:ENST00000642879.1:ENST00000645645.1:ENST00000642594.1:ENST00000646268.1:ENST00000645095.1:ENST00000646608.1:ENST00000645005.1:ENST00000644801.1:ENST00000644289.1:ENST00000646366.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	53	2	2.43783	2.533	2.62817	0.00916404	0.004048	0.0812949	0.0578376
chr17	78814952	78815052	6846130	0	-	0.52	(0.515,0.57]	chr17	677413	4	SS3_PROX	SS3_PROX:INTRON	USP36	ENSG00000055483.20	ENST00000589225.5:ENST00000592231.6:ENST00000449938.7:ENST00000542802.7:ENST00000693020.1:ENST00000312010.10:ENST00000588086.6:ENST00000588467.5:ENST00000586066.3:ENST00000590312.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	53	2	2.43783	2.533	2.62817	0.00916404	0.004048	0.0812949	0.0578376
chr7	127787786	127787886	3403768	0	+	0.44	(0.408,0.44]	chr7	318134	660	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000468166.5:ENST00000465900.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	47	2	2.51492	2.532975	2.55103	0.0329839	0.00587353	0.133816	0.0690758
chr17	22097503	22097603	6578638	0	+	0.2	[0,0.28]	chr17	639556	62	INTRON	INTRON	UBBP4	ENSG00000263563.7	ENST00000648259.1:ENST00000688301.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	9	129	2	1.53984	2.53289	3.52594	0.0214158	0.00224145	0.123819	0.0423923
chr12	45765193	45765293	5123071	0	+	0.45	(0.44,0.476]	chr12	483303	93	INTRON	INTRON	ARID2	ENSG00000189079.17	ENST00000334344.11:ENST00000426776.5:ENST00000422737.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	46	2	2.39003	2.5328749999999998	2.67572	0.0212064	0.0106488	0.113017	0.0915714
chr1	246871775	246871874	681334	0	-	0.333333	(0.32,0.35]	chr1	79915	36	INTRON	INTRON	AHCTF1	ENSG00000153207.16	ENST00000648844.2:ENST00000326225.3:ENST00000366508.5:ENST00000470300.5:ENST00000483900.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	130	2	1.90165	2.532825	3.164	0.00508454	7.36249e-4	0.0646039	0.02495
chr9	124859882	124859982	4349239	0	-	0.53	(0.515,0.57]	chr9	399277	3	SS5_PROX	SS5_PROX:INTRON	RPL35	ENSG00000136942.15	ENST00000373570.8:ENST00000348462.6:ENST00000487431.1:ENST00000493018.5:ENST00000629845.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	67	2	2.45585	2.5328150000000003	2.60978	0.00797827	0.00151689	0.0798772	0.0352794
chr5	131200786	131200884	2484397	0	+	0.22449	[0,0.28]	chr5	237094	13	UTR3	UTR3:EXON_MRNA	LYRM7	ENSG00000186687.16	ENST00000379380.9	protein_coding	protein_coding	protein_coding	protein_coding	2	49	2	2.49527	2.5328	2.57033	0.0436497	0.0305273	0.14882	0.143385
chr2	71373446	71373544	807439	0	+	0.540816	(0.515,0.57]	chr2	90193	31	INTRON	INTRON	ZNF638	ENSG00000075292.19	ENST00000410075.5:ENST00000409544.5:ENST00000264447.9:ENST00000601581.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	21	252	2	2.45026	2.53278	2.6153	4.75924e-5	3.28639e-5	0.00563287	0.00483774
chr1	84672799	84672898	496599	0	-	0.535354	(0.515,0.57]	chr1	58890	11	INTRON	INTRON	SSX2IP	ENSG00000117155.17	ENST00000342203.8:ENST00000437941.6:ENST00000481102.5:ENST00000476905.6:ENST00000605755.5:ENST00000603677.1:ENST00000422026.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	55	2	1.63907	2.532755	3.42644	0.0350277	0.00106731	0.137535	0.0300133
chr1	202941201	202941294	621264	0	-	0.397849	(0.378,0.408]	chr1	73774	5	UTR3	UTR3:EXON_MRNA	ADIPOR1	ENSG00000159346.13	ENST00000495562.5:ENST00000340990.10	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	66	2	2.0102	2.53261	3.05502	0.00940766	0.00689519	0.0861183	0.0717484
chr1	1657998	1658081	360608	0	-	0.578313	(0.57,1]	chr1	41965	1	INTRON	INTRON	CDK11B	ENSG00000248333.9	ENST00000341832.11:ENST00000407249.7:ENST00000340677.9:ENST00000611150.3:ENST00000615951.4:ENST00000626918.2:ENST00000629289.2:ENST00000629312.2:ENST00000341028.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	25	2	2.28103	2.53256	2.78409	0.0151554	0.0116033	0.108535	0.0889104
chr19	28520317	28520417	7166298	0	-	0.51	(0.476,0.515]	chr19	724189	521	INTRON	INTRON	ENSG00000283403:ENSG00000267243	ENSG00000283403.1:ENSG00000267243.6	ENST00000592347.5:ENST00000593065.5	lncRNA	lncRNA	lncRNA	lncRNA	5	74	2	2.17347	2.53256	2.89165	0.010447	0.00142068	0.0855102	0.034662
chr1	151696803	151696903	226591	0	+	0.5	(0.476,0.515]	chr1	25935	25	UTR3	UTR3:EXON_MRNA	SNX27	ENSG00000143376.14	ENST00000368843.8:ENST00000458013.7	protein_coding	protein_coding	protein_coding	protein_coding	4	56	2	1.52615	2.5325499999999996	3.53895	0.0739267	0.00075485700000000005	0.190914	0.0251966
chr19	23771725	23771824	7042516	0	+	0.444444	(0.44,0.476]	chr19	702194	82	INTRON	INTRON	RPSAP58	ENSG00000288920.1	ENST00000471224.5:ENST00000692590.1:ENST00000475499.2:ENST00000686829.1:ENST00000689525.1:ENST00000691397.1:ENST00000688405.1:ENST00000692739.1:ENST00000687994.1:ENST00000484897.4:ENST00000685013.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	62	2	2.51554	2.53249	2.54944	0.00777207	0.00591346	0.0757731	0.0694038
chr10	35127567	35127667	4422710	0	+	0.6	(0.57,1]	chr10	407753	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	CREM	ENSG00000095794.20	ENST00000474362.5:ENST00000374721.7:ENST00000496626.5:ENST00000685392.1:ENST00000482646.5:ENST00000489388.5:ENST00000374726.7:ENST00000461968.5:ENST00000490460.5:ENST00000466251.5:ENST00000482633.5:ENST00000495960.5:ENST00000686585.1:ENST00000429130.7:ENST00000469949.6:ENST00000460270.5:ENST00000496019.5:ENST00000354759.7:ENST00000489321.5:ENST00000374728.7:ENST00000427847.6:ENST00000345491.7:ENST00000487132.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	25	2	2.17026	2.532445	2.89463	0.0220522	0.00788262	0.123836	0.076155
chr2	111484640	111484740	1211707	0	-	0.6	(0.57,1]	chr2	128939	42	INTRON	INTRON	MIR4435-2HG	ENSG00000172965.17	ENST00000645030.2:ENST00000642191.1:ENST00000673798.1:ENST00000645051.2:ENST00000673649.1:ENST00000669658.1:ENST00000669917.1:ENST00000661559.1:ENST00000653687.1:ENST00000667670.1:ENST00000609220.2:ENST00000656760.1:ENST00000609902.6:ENST00000666683.1:ENST00000674070.1:ENST00000662335.1:ENST00000664422.1:ENST00000673775.1:ENST00000674092.1:ENST00000673958.1:ENST00000658936.1:ENST00000662635.1:ENST00000666204.1:ENST00000659458.1:ENST00000664443.1:ENST00000670295.1:ENST00000661655.1:ENST00000666390.1:ENST00000659079.1:ENST00000660442.1:ENST00000664009.1:ENST00000439362.6:ENST00000654473.1:ENST00000664999.1:ENST00000673728.1:ENST00000659791.1:ENST00000666144.1:ENST00000659933.1:ENST00000670715.1:ENST00000653568.1:ENST00000643013.1:ENST00000673866.1:ENST00000443467.6:ENST00000669875.1:ENST00000673653.1:ENST00000673988.1:ENST00000661945.1:ENST00000669515.1:ENST00000431385.6:ENST00000656416.1:ENST00000674037.1:ENST00000432818.5:ENST00000674013.1:ENST00000444301.5:ENST00000673964.1:ENST00000673845.1:ENST00000673756.1:ENST00000673960.1:ENST00000673804.1:ENST00000673632.1:ENST00000453478.2:ENST00000673937.1:ENST00000673654.1:ENST00000409569.2:ENST00000674087.1:ENST00000419736.5:ENST00000673840.1:ENST00000674045.1:ENST00000643766.1:ENST00000308604.5:ENST00000604981.5:ENST00000673894.1:ENST00000441075.1:ENST00000673878.1	lncRNA	lncRNA	lncRNA	lncRNA	3	25	2	2.17026	2.532445	2.89463	0.0220522	0.00788262	0.123836	0.076155
chr4	2507884	2507983	1912222	0	+	0.626263	(0.57,1]	chr4	191953	68	INTRON	INTRON	RNF4	ENSG00000063978.16	ENST00000541204.5:ENST00000502316.5:ENST00000509388.5:ENST00000507247.5:ENST00000314289.13:ENST00000511843.5:ENST00000509258.5:ENST00000513284.5:ENST00000511859.5:ENST00000513643.5:ENST00000506706.5:ENST00000511600.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	25	2	2.17026	2.532445	2.89463	0.0220522	0.00788262	0.123836	0.076155
chr4	120066796	120066858	2230832	0	-	0.564516	(0.515,0.57]	chr4	218570	2	UTR5	UTR5:EXON_MRNA	MAD2L1	ENSG00000164109.14	ENST00000296509.11:ENST00000333047.9:ENST00000504707.1:ENST00000511295.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	40	2	2.45585	2.53242	2.60899	0.0232669	0.00797827	0.118148	0.0798772
chr1	21118921	21119021	393050	0	-	0.17	[0,0.28]	chr1	46836	59	INTRON	INTRON	EIF4G3	ENSG00000075151.24	ENST00000374935.7:ENST00000602326.6:ENST00000685872.1:ENST00000686579.1:ENST00000688741.1:ENST00000400422.6:ENST00000634879.2:ENST00000693470.1:ENST00000685814.1:ENST00000356916.7:ENST00000682284.1:ENST00000438975.5:ENST00000411888.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	66	2	2.33097	2.532405	2.73384	0.0246308	0.0158969	0.12011	0.109464
chr5	38969300	38969397	2604585	0	-	0.206186	[0,0.28]	chr5	247841	9	INTRON	INTRON	RICTOR	ENSG00000164327.13	ENST00000357387.8:ENST00000511516.5:ENST00000296782.9:ENST00000509567.5:ENST00000515846.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	66	2	2.24546	2.53234	2.81922	0.0206502	0.0197411	0.122348	0.109608
chr1	28738338	28738438	58357	0	+	0.33	(0.32,0.35]	chr1	7585	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	YTHDF2	ENSG00000198492.16	ENST00000542507.5:ENST00000474884.5:ENST00000373812.8:ENST00000541996.5:ENST00000478283.5:ENST00000496288.5:ENST00000476976.1:ENST00000475796.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	73	2	2.49929	2.5322449999999996	2.5652	0.00776612	0.00765724	0.0787356	0.075364
chr7	150280352	150280452	3673218	0	-	0.33	(0.32,0.35]	chr7	340876	309	INTRON	INTRON	ACTR3C	ENSG00000106526.11	ENST00000478393.5:ENST00000683684.1:ENST00000252071.8	protein_coding	protein_coding	protein_coding	protein_coding	4	73	2	2.49929	2.5322449999999996	2.5652	0.00776612	0.00765724	0.0787356	0.075364
chr12	123215034	123215134	5443878	0	-	0.48	(0.476,0.515]	chr12	520843	2	SS3_PROX	SS3_PROX:INTRON	MPHOSPH9	ENSG00000051825.15	ENST00000606320.6:ENST00000541076.6:ENST00000545556.6:ENST00000302373.8:ENST00000539024.5:ENST00000539336.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	56	2	1.93059	2.53224	3.13389	0.023762	0.00405473	0.118822	0.0578376
chr19	57791311	57791411	7105431	0	+	0.5	(0.476,0.515]	chr19	713175	4	SS3_PROX	SS3_PROX:INTRON	ZNF586	ENSG00000083828.16	ENST00000651718.1:ENST00000598885.5:ENST00000598183.1:ENST00000599802.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	56	2	1.93059	2.53224	3.13389	0.023762	0.00405473	0.118822	0.0578376
chr7	72881776	72881875	3329813	0	+	0.484848	(0.476,0.515]	chr7	309555	15	INTRON	INTRON	POM121	ENSG00000196313.13	ENST00000627934.3:ENST00000395270.5	protein_coding	protein_coding	protein_coding	protein_coding	4	56	2	1.93059	2.53224	3.13389	0.023762	0.00405473	0.118822	0.0578376
chr16	16554598	16554698	6311408	0	+	0.36	(0.35,0.378]	chr16	604098	546	INTRON	INTRON	ENSG00000260126	ENSG00000260126.2	ENST00000567465.2	lncRNA	lncRNA	lncRNA	lncRNA	4	62	2	1.95579	2.53221	3.10863	0.0234538	0.00470896	0.11867	0.0631419
chr1	161167509	161167586	234069	0	+	0.25974	[0,0.28]	chr1	28062	1	SSB_ADJ	SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PPOX	ENSG00000143224.18	ENST00000652729.1:ENST00000352210.9:ENST00000367999.9:ENST00000497522.5:ENST00000470607.5:ENST00000479246.5:ENST00000651150.1:ENST00000539753.5:ENST00000652182.1:ENST00000652473.1:ENST00000544598.5:ENST00000495483.5:ENST00000468968.6:ENST00000535223.5:ENST00000490768.1:ENST00000462866.5:ENST00000652103.1:ENST00000650741.1:ENST00000652297.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	257	2	1.89178	2.53215	3.17252	0.00726403	6.07261e-5	0.0730904	0.00644153
chrX	54567289	54567388	7664986	0	+	0.454545	(0.44,0.476]	chrX	784798	1	INTRON	INTRON	GNL3L	ENSG00000130119.17	ENST00000674498.1	protein_coding	protein_coding	protein_coding	protein_coding	8	114	2	2.15426	2.532085	2.90991	0.00372059	3.20441e-4	0.0535094	0.0159645
chr15	43418310	43418410	6161074	0	-	0.51	(0.476,0.515]	chr15	586686	12	INTRON	INTRON	TP53BP1	ENSG00000067369.14	ENST00000382044.9:ENST00000263801.7:ENST00000382039.7:ENST00000411772.5:ENST00000450115.6:ENST00000434561.1:ENST00000572085.5:ENST00000571145.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	46	2	2.43242	2.53205	2.63168	0.0237106	0.0091895	0.118716	0.0855292
chr3	156551997	156552094	1844482	0	-	0.505155	(0.476,0.515]	chr3	185593	6	INTRON	INTRON	SSR3	ENSG00000114850.7	ENST00000265044.7:ENST00000467789.5:ENST00000476217.5:ENST00000463503.5:ENST00000496050.1:ENST00000467733.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	46	2	2.43242	2.53205	2.63168	0.0237106	0.0091895	0.118716	0.0855292
chr5	10429392	10429492	2318438	0	+	0.48	(0.476,0.515]	chr5	224756	1	SS3_PROX	SS3_PROX:INTRON	MARCHF6	ENSG00000145495.16	ENST00000274140.10:ENST00000449913.6:ENST00000511802.5:ENST00000503788.5:ENST00000510792.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	46	2	2.43242	2.53205	2.63168	0.0237106	0.0091895	0.118716	0.0855292
chr7	10728603	10728703	3484066	0	-	0.29	(0.28,0.32]	chr7	325772	1667	INTRON	INTRON	MGC4859	ENSG00000283117.1	ENST00000634803.1	lncRNA	lncRNA	lncRNA	lncRNA	6	89	2	1.72809	2.532025	3.33596	0.0197186	0.00342993	0.120131	0.0517761
chr19	5082504	5082604	7004565	0	+	0.62	(0.57,1]	chr19	694853	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	KDM4B	ENSG00000127663.15	ENST00000159111.9:ENST00000611640.4:ENST00000381759.8:ENST00000536461.5:ENST00000589104.5:ENST00000588961.1:ENST00000588361.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	54	2	2.161	2.5320150000000003	2.9030300000000002	0.00462668	2.31233e-4	0.062717	0.0139514
chr11	68318296	68318396	4815992	0	+	0.53	(0.515,0.57]	chr11	448753	51	INTRON	INTRON	LRP5	ENSG00000162337.12	ENST00000294304.12:ENST00000529993.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	40	2	2.03361	2.53199	3.03037	0.0325854	0.00608732	0.145164	0.0676501
chr1	179955841	179955940	267446	0	+	0.373737	(0.35,0.378]	chr1	31297	3	INTRON	INTRON	CEP350	ENSG00000135837.16	ENST00000491495.2:ENST00000367607.8	protein_coding	protein_coding	protein_coding	protein_coding	4	61	2	2.28182	2.5319700000000003	2.78212	0.0168532	0.00637232	0.103549	0.0724821
chr4	70979209	70979291	1971279	0	+	0.390244	(0.378,0.408]	chr4	197604	2	CDS	CDS:EXON_MRNA:INTRON	MOB1B	ENSG00000173542.9	ENST00000309395.7:ENST00000396051.2:ENST00000511449.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	21	246	2	1.84333	2.531935	3.22054	0.00113297	3.60996e-5	0.0308572	0.00508987
chr4	76147559	76147640	2164442	0	-	0.506173	(0.476,0.515]	chr4	213503	2	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	NUP54	ENSG00000138750.16	ENST00000695546.1:ENST00000695547.1:ENST00000695552.1:ENST00000507257.6:ENST00000264883.8:ENST00000515460.6:ENST00000695554.1:ENST00000695553.1:ENST00000695551.1:ENST00000695556.1:ENST00000695549.1:ENST00000695550.1:ENST00000695555.1:ENST00000514987.6:ENST00000502850.5:ENST00000508465.6:ENST00000512151.5:ENST00000504173.1:ENST00000695557.1:ENST00000514307.5:ENST00000508583.6:ENST00000506098.5:ENST00000510884.5:ENST00000513352.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	46	2	1.92984	2.531865	3.13389	0.0466474	0.00405473	0.151522	0.0578376
chr11	113798360	113798458	5043672	0	-	0.469388	(0.44,0.476]	chr11	475216	6	UTR3	UTR3:EXON_MRNA	USP28	ENSG00000048028.11	ENST00000003302.8:ENST00000544967.5	protein_coding	protein_coding	protein_coding	protein_coding	10	134	2	1.94961	2.53186	3.11411	0.00356879	1.6068e-4	0.0548435	0.0116076
chr17	70021778	70021878	6827661	0	-	0.38	(0.378,0.408]	chr17	674990	3	SS5_PROX	SS5_PROX:INTRON	ENSG00000230258	ENSG00000230258.6	ENST00000435112.5:ENST00000587325.1	lncRNA	lncRNA	lncRNA	lncRNA	2	36	2	2.13703	2.53184	2.92665	0.0797592	0.0086017	0.19979	0.083729
chr5	112767590	112767690	2452189	0	+	0.4	(0.378,0.408]	chr5	234931	2	SS5_PROX	SS5_PROX:INTRON	APC	ENSG00000134982.17	ENST00000507379.5:ENST00000257430.9:ENST00000508624.5:ENST00000508376.6:ENST00000512211.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	36	2	2.13703	2.53184	2.92665	0.0797592	0.0086017	0.19979	0.083729
chr6	36510974	36511073	3089011	0	-	0.40404	(0.378,0.408]	chr6	288948	30	INTRON	INTRON	STK38	ENSG00000112079.9	ENST00000229812.8	protein_coding	protein_coding	protein_coding	protein_coding	2	36	2	2.13703	2.53184	2.92665	0.0797592	0.0086017	0.19979	0.083729
chr18	26072622	26072721	6959547	0	-	0.494949	(0.476,0.515]	chr18	688461	37	INTRON	INTRON	SS18	ENSG00000141380.14	ENST00000415083.7:ENST00000542420.6:ENST00000579640.5:ENST00000269138.9:ENST00000269137.11:ENST00000585121.5:ENST00000539244.6:ENST00000585241.5:ENST00000578954.5:ENST00000579061.5:ENST00000577636.5:ENST00000584083.5:ENST00000578700.5:ENST00000582792.5:ENST00000581021.5:ENST00000577572.5:ENST00000582448.5:ENST00000581570.5:ENST00000577751.5:ENST00000580003.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	46	2	2.05154	2.531755	3.01197	0.0336015	0.00633162	0.134145	0.0722266
chr3	184324447	184324529	1582403	0	+	0.512195	(0.476,0.515]	chr3	163637	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	EIF4G1	ENSG00000114867.22	ENST00000352767.7:ENST00000414031.5:ENST00000392537.6:ENST00000442406.5:ENST00000435046.7:ENST00000382330.7:ENST00000413967.5:ENST00000426123.5:ENST00000346169.7:ENST00000350481.9:ENST00000427845.5:ENST00000342981.8:ENST00000424196.5:ENST00000411531.5:ENST00000444861.5:ENST00000441154.5:ENST00000434061.6:ENST00000676453.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	46	2	2.05154	2.531755	3.01197	0.0336015	0.00633162	0.134145	0.0722266
chr5	54060067	54060167	2618406	0	-	0.39	(0.378,0.408]	chr5	248837	119	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	195	2	2.45149	2.5316650000000003	2.61184	4.40819e-4	1.60611e-4	0.0193526	0.0109124
chr1	213170948	213171047	311905	0	+	0.30303	(0.28,0.32]	chr1	35951	26	INTRON	INTRON	RPS6KC1	ENSG00000136643.12	ENST00000615329.4:ENST00000543354.5:ENST00000614059.4:ENST00000543470.5:ENST00000366960.8:ENST00000366959.4:ENST00000490299.5:ENST00000468069.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	58	2	2.1895	2.5316599999999996	2.87382	0.0227063	0.014868	0.124921	0.0989021
chr1	224385145	224385244	644927	0	-	0.333333	(0.32,0.35]	chr1	76214	1	UTR3	UTR3:EXON_MRNA	WDR26	ENSG00000162923.17	ENST00000414423.9:ENST00000678917.1:ENST00000651911.2:ENST00000678879.1	protein_coding	protein_coding	protein_coding	protein_coding	10	140	2	1.99104	2.531535	3.07203	0.00257185	0.00109373	0.0466958	0.0304174
chrX	136911068	136911166	7727476	0	+	0.397959	(0.378,0.408]	chrX	790754	9	INTRON	INTRON	TM9SF5P	ENSG00000234062.9	ENST00000650669.2:ENST00000687469.1:ENST00000431464.6:ENST00000685550.1:ENST00000685929.1:ENST00000424306.5:ENST00000687978.1:ENST00000688713.1:ENST00000693626.1:ENST00000686432.1:ENST00000693698.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	3	50	2	2.35103	2.5314300000000003	2.71183	0.0170789	0.014158	0.110899	0.0959618
chr1	35735498	35735598	422530	0	-	0.52	(0.515,0.57]	chr1	50898	35	UTR3	UTR3:EXON_MRNA:INTRON	CLSPN	ENSG00000092853.14	ENST00000251195.9:ENST00000318121.8	protein_coding	protein_coding	protein_coding	protein_coding	12	146	2	2.39558	2.531395	2.66721	3.70168e-4	2.50973e-4	0.0173218	0.0146528
chr1	180984176	180984276	595955	0	-	0.39	(0.378,0.408]	chr1	71221	1	SS5_PROX	SS5_PROX:INTRON	STX6	ENSG00000135823.14	ENST00000542060.5:ENST00000258301.6:ENST00000469135.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	59	2	1.94906	2.53133	3.1136	0.023282	0.00443339	0.118176	0.061054
chr7	111354078	111354178	3622023	0	-	0.28	[0,0.28]	chr7	337093	3902	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	109	2	2.15711	2.5312799999999998	2.90545	0.0161128	0.00202423	0.101453	0.0416117
chr17	66307925	66308025	6662350	0	+	0.37	(0.35,0.378]	chr17	650320	14	INTRON	INTRON	PRKCA	ENSG00000154229.12	ENST00000413366.8:ENST00000578063.5:ENST00000583361.1:ENST00000284384.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	61	2	1.56287	2.53127	3.49967	0.0697648	9.80974e-4	0.184298	0.0287765
chr7	155762411	155762510	3453092	0	+	0.353535	(0.35,0.378]	chr7	322730	154	INTRON	INTRON	RBM33	ENSG00000184863.11	ENST00000401878.8:ENST00000392761.3:ENST00000438356.1:ENST00000341148.7	protein_coding	protein_coding	protein_coding	protein_coding	4	61	2	1.56287	2.53127	3.49967	0.0697648	9.80974e-4	0.184298	0.0287765
chr19	4999282	4999382	7003718	0	+	0.57	(0.515,0.57]	chr19	694800	297	INTRON	INTRON	KDM4B	ENSG00000127663.15	ENST00000159111.9:ENST00000611640.4:ENST00000588337.5:ENST00000381759.8	protein_coding	protein_coding	protein_coding	protein_coding	3	41	2	1.86007	2.5312349999999997	3.2024	0.0526611	0.00322022	0.178401	0.0507087
chr22	35401105	35401187	7508904	0	+	0.536585	(0.515,0.57]	chr22	766443	1	SS3_PROX	SS3_PROX:INTRON	MCM5	ENSG00000100297.16	ENST00000451351.5:ENST00000382011.9:ENST00000216122.9:ENST00000417343.1:ENST00000416905.1:ENST00000444778.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	41	2	1.86007	2.5312349999999997	3.2024	0.0526611	0.00322022	0.178401	0.0507087
chr5	90701883	90701981	2421866	0	+	0.295918	(0.28,0.32]	chr5	232965	44	INTRON	INTRON	ADGRV1	ENSG00000164199.18	ENST00000405460.9:ENST00000640403.1:ENST00000639473.1:ENST00000639431.1:ENST00000640779.1:ENST00000640012.1:ENST00000640374.1:ENST00000509621.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	43	2	2.2609	2.5312349999999997	2.80157	0.0671429	0.0147132	0.183051	0.106558
chr7	99418121	99418217	3361832	0	+	0.520833	(0.515,0.57]	chr7	313957	1	INTRON	INTRON	BUD31	ENSG00000106245.11	ENST00000403633.6:ENST00000222969.10:ENST00000456893.6:ENST00000431419.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	41	2	1.86007	2.5312349999999997	3.2024	0.0526611	0.00322022	0.178401	0.0507087
chr6	16258920	16259020	2826179	0	+	0.54	(0.515,0.57]	chr6	265366	4	INTRON	INTRON	GMPR	ENSG00000137198.10	ENST00000259727.5:ENST00000543191.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	87	2	2.45261	2.5311950000000003	2.60978	0.00151689	0.00116897	0.0352794	0.0315666
chr1	19207583	19207683	386816	0	-	0.39	(0.378,0.408]	chr1	46143	54	INTRON	INTRON	UBR4	ENSG00000127481.15	ENST00000375254.8	protein_coding	protein_coding	protein_coding	protein_coding	2	36	2	2.45932	2.5311399999999997	2.60296	0.0346754	0.0267851	0.148144	0.123349
chr16	85064654	85064751	6411213	0	+	0.402062	(0.378,0.408]	chr16	615379	6	INTRON	INTRON	KIAA0513	ENSG00000135709.14	ENST00000538274.6:ENST00000567328.6:ENST00000683363.1:ENST00000566428.5	protein_coding	protein_coding	protein_coding	protein_coding	2	36	2	2.45932	2.5311399999999997	2.60296	0.0346754	0.0267851	0.148144	0.123349
chr9	77987826	77987926	4271508	0	-	0.39	(0.378,0.408]	chr9	392880	651	INTRON	INTRON	GNAQ	ENSG00000156052.11	ENST00000286548.9:ENST00000411677.1	protein_coding	protein_coding	protein_coding	protein_coding	2	36	2	2.45932	2.5311399999999997	2.60296	0.0346754	0.0267851	0.148144	0.123349
chr1	150554996	150555065	223207	0	+	0.492754	(0.476,0.515]	chr1	25280	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ADAMTSL4	ENSG00000143382.16	ENST00000369039.9:ENST00000271643.9:ENST00000369041.9:ENST00000674043.1:ENST00000674058.1:ENST00000369038.6	protein_coding	protein_coding	protein_coding	protein_coding	7	102	2	2.3399	2.53109	2.72228	0.00275491	8.52725e-4	0.0469265	0.0264928
chr12	121337190	121337290	5437029	0	-	0.38	(0.378,0.408]	chr12	519903	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ANAPC5	ENSG00000089053.13	ENST00000261819.8:ENST00000541887.5:ENST00000534976.5:ENST00000441917.6:ENST00000539079.5:ENST00000545218.5:ENST00000535472.5:ENST00000538223.1:ENST00000539612.5:ENST00000541652.5:ENST00000544442.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	58	2	1.63458	2.53104	3.4275	0.0573057	0.00126053	0.167723	0.03295
chr1	21717947	21718046	396194	0	-	0.30303	(0.28,0.32]	chr1	47259	21	INTRON	INTRON	USP48	ENSG00000090686.16	ENST00000400301.5:ENST00000308271.14:ENST00000374732.7:ENST00000529637.5:ENST00000471752.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	43	2	2.45545	2.531005	2.60656	0.0438092	0.0256827	0.14901	0.133676
chr16	21434650	21434750	6460661	0	-	0.4	(0.378,0.408]	chr16	623222	32	INTRON	INTRON	NPIPB3	ENSG00000169246.16	ENST00000521589.5:ENST00000545358.5:ENST00000543368.1:ENST00000544154.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	13	145	2	1.18618	2.53096	3.87574	0.048354	6.39928e-6	0.15348	0.00178345
chr3	47765037	47765137	1684908	0	-	0.53	(0.515,0.57]	chr3	172116	187	INTRON	INTRON	SMARCC1	ENSG00000173473.11	ENST00000254480.10:ENST00000425518.5:ENST00000454240.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	40	2	2.15051	2.530955	2.9114	0.0238113	0.00826019	0.118889	0.0813266
chr7	107497039	107497139	3612356	0	-	0.5	(0.476,0.515]	chr7	336698	162	INTRON	INTRON	COG5	ENSG00000164597.15	ENST00000297135.9:ENST00000347053.8:ENST00000393603.7:ENST00000475638.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	116	2	2.41425	2.53094	2.64763	0.00197914	4.86633e-4	0.0404068	0.0199652
chr5	32593772	32593871	2334836	0	+	0.545455	(0.515,0.57]	chr5	225364	17	INTRON	INTRON	SUB1	ENSG00000113387.12	ENST00000506237.5:ENST00000512913.5:ENST00000513013.5:ENST00000265073.9:ENST00000511615.5:ENST00000515355.5:ENST00000502897.5:ENST00000504789.5:ENST00000504016.1:ENST00000511175.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	58	2	2.03361	2.5309	3.02819	0.0325854	7.81057e-4	0.145164	0.0257168
chr17	30748138	30748237	6589969	0	+	0.333333	(0.32,0.35]	chr17	640860	44	INTRON	INTRON	SUZ12P1	ENSG00000264538.7	ENST00000578070.5:ENST00000579526.5:ENST00000690405.1:ENST00000497969.6:ENST00000578195.6:ENST00000582557.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	4	78	2	2.13945	2.530745	2.92204	0.0254517	0.00202818	0.133676	0.04086
chr11	9201616	9201716	4908428	0	-	0.42	(0.408,0.44]	chr11	460086	76	INTRON	INTRON	DENND5A	ENSG00000184014.9	ENST00000328194.8:ENST00000681203.1:ENST00000530780.2:ENST00000679999.1:ENST00000680470.1:ENST00000680599.1:ENST00000680554.1:ENST00000679745.1:ENST00000680252.1:ENST00000681425.1:ENST00000681158.1:ENST00000679460.1:ENST00000679568.1:ENST00000679446.1:ENST00000680294.1:ENST00000680742.1:ENST00000680885.1:ENST00000680576.1:ENST00000530044.5:ENST00000526707.5:ENST00000681173.1:ENST00000530867.2:ENST00000681915.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	75	2	2.19524	2.5306800000000003	2.86612	0.00990486	0.00157924	0.0838372	0.0366789
chr20	49284887	49284986	7284670	0	+	0.444444	(0.44,0.476]	chr20	741065	27	INTRON	INTRON	ZFAS1	ENSG00000177410.13	ENST00000371743.8:ENST00000417721.5:ENST00000441722.5:ENST00000450535.5:ENST00000458653.5:ENST00000428008.6:ENST00000620594.2:ENST00000652916.1:ENST00000326677.9:ENST00000659056.1	lncRNA	lncRNA	lncRNA	lncRNA	20	291	2	2.31895	2.530675	2.7424	1.98081e-4	2.68863e-5	0.0122787	0.00430583
chr1	35875366	35875465	70558	0	+	0.363636	(0.35,0.378]	chr1	9024	51	INTRON	INTRON	AGO1	ENSG00000092847.13	ENST00000373206.5	protein_coding	protein_coding	protein_coding	protein_coding	7	103	2	2.0653	2.53066	2.99602	0.00473276	0.00133795	0.0633849	0.0335491
chr12	31980079	31980178	5106811	0	+	0.353535	(0.35,0.378]	chr12	482333	94	INTRON	INTRON	RESF1	ENSG00000174718.12	ENST00000541981.5:ENST00000540924.5:ENST00000312561.9:ENST00000535596.5:ENST00000397578.7:ENST00000381054.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	50	2	2.39583	2.53065	2.66547	0.0233639	0.0107976	0.118323	0.0920575
chr2	214807211	214807311	1326164	0	-	0.36	(0.35,0.378]	chr2	138639	97	INTRON	INTRON	BARD1	ENSG00000138376.11	ENST00000260947.9:ENST00000617164.5:ENST00000619009.5:ENST00000613374.5:ENST00000613706.5:ENST00000421162.2:ENST00000613192.2:ENST00000620057.4:ENST00000455743.5:ENST00000471787.1:ENST00000479904.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	51	2	2.47065	2.530555	2.59046	0.0386172	0.00528327	0.142656	0.0656295
chr6	36598526	36598626	2854458	0	+	0.47	(0.44,0.476]	chr6	269783	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SRSF3	ENSG00000112081.17	ENST00000613941.4:ENST00000373715.11:ENST00000339436.11:ENST00000477442.6:ENST00000620941.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	192	2	1.8585	2.5305400000000002	3.20258	0.00415914	1.431e-5	0.0590902	0.00302082
chr15	63223073	63223173	6041089	0	+	0.36	(0.35,0.378]	chr15	575235	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	RAB8B	ENSG00000166128.13	ENST00000558990.5:ENST00000558119.5:ENST00000559927.1:ENST00000321437.9:ENST00000559006.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	81	2	2.5003	2.530505	2.56071	0.00725312	0.00256148	0.072984	0.0466761
chr5	28827743	28827843	2330027	0	+	0.36	(0.35,0.378]	chr5	225135	172	INTRON	INTRON	LINC02109	ENSG00000259786.7	ENST00000658190.1	lncRNA	lncRNA	lncRNA	lncRNA	5	81	2	2.5003	2.530505	2.56071	0.00725312	0.00256148	0.072984	0.0466761
chr7	129952202	129952302	3637969	0	-	0.55	(0.515,0.57]	chr7	338243	3	SS5_PROX	SS5_PROX:INTRON	UBE2H	ENSG00000186591.13	ENST00000355621.8:ENST00000473814.6:ENST00000472396.5:ENST00000480245.5:ENST00000490974.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	82	2	2.34011	2.530455	2.7208	0.00306828	0.00106662	0.0494933	0.0300133
chr16	88626126	88626221	6418834	0	+	0.473684	(0.44,0.476]	chr16	615849	10	EXON_MRNA	EXON_MRNA:INTRON	ZC3H18	ENSG00000158545.16	ENST00000301011.10:ENST00000452588.6:ENST00000564161.1:ENST00000564341.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	47	2	2.24189	2.530425	2.81896	0.0193405	0.0120766	0.108861	0.0962311
chr8	123337032	123337124	4042018	0	-	0.456522	(0.44,0.476]	chr8	368674	1	INTRON	INTRON	ATAD2	ENSG00000156802.13	ENST00000287394.10:ENST00000517666.5:ENST00000521903.5:ENST00000519124.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	134	2	1.92339	2.530425	3.13746	0.00506144	8.94727e-5	0.0621733	0.0079464
chr20	35729851	35729951	7336426	0	-	0.36	(0.35,0.378]	chr20	747470	3	SS3_PROX	SS3_PROX:INTRON	RBM39	ENSG00000131051.24	ENST00000253363.11:ENST00000639702.1:ENST00000656873.1:ENST00000463004.5:ENST00000361162.10:ENST00000461283.5:ENST00000403542.6:ENST00000338163.10:ENST00000528062.7:ENST00000429968.5:ENST00000444878.5:ENST00000665058.1:ENST00000492779.5:ENST00000374038.7:ENST00000412738.5:ENST00000434927.5:ENST00000425184.5:ENST00000481037.5:ENST00000455343.5:ENST00000416108.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	50	2	2.17079	2.53041	2.89003	0.0225978	0.0122391	0.124921	0.0910127
chr7	132924955	132925055	3644312	0	-	0.37	(0.35,0.378]	chr7	338848	376	INTRON	INTRON	CHCHD3	ENSG00000106554.13	ENST00000262570.10:ENST00000448878.6:ENST00000496427.5:ENST00000423635.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	50	2	2.17079	2.53041	2.89003	0.0225978	0.0122391	0.124921	0.0910127
chr3	136181107	136181207	1824087	0	-	0.36	(0.35,0.378]	chr3	183518	280	INTRON	INTRON	MSL2	ENSG00000174579.4	ENST00000309993.3:ENST00000434835.2:ENST00000481989.1:ENST00000491050.1:ENST00000473093.1	protein_coding	protein_coding	protein_coding	protein_coding	4	60	2	1.97646	2.530385	3.08431	0.0193942	0.0065853	0.119831	0.0701901
chr12	68809492	68809592	5162983	0	+	0.31	(0.28,0.32]	chr12	488874	2	SS5_PROX	SS5_PROX:INTRON	MDM2	ENSG00000135679.27	ENST00000258149.11:ENST00000393412.7:ENST00000311420.13:ENST00000493419.1:ENST00000393417.8:ENST00000258148.11:ENST00000539479.6:ENST00000523991.5:ENST00000543323.5:ENST00000393415.7:ENST00000393416.7:ENST00000481186.6:ENST00000545204.2:ENST00000544561.6:ENST00000665020.1:ENST00000666617.1:ENST00000671567.1:ENST00000393410.5:ENST00000496959.5:ENST00000299252.8:ENST00000360430.6:ENST00000517852.5:ENST00000546048.5:ENST00000540352.5:ENST00000542502.5:ENST00000537182.5:ENST00000536089.5:ENST00000393413.7:ENST00000350057.9:ENST00000348801.7:ENST00000478070.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	44	2	2.38101	2.53038	2.67975	0.0456017	0.0252505	0.164236	0.12011
chr20	2464497	2464596	7305750	0	-	0.282828	(0.28,0.32]	chr20	743792	7	EXON_MRNA	EXON_MRNA:INTRON	SNRPB	ENSG00000125835.20	ENST00000438552.6:ENST00000381342.7:ENST00000688775.1:ENST00000689440.1:ENST00000689611.1:ENST00000474384.2:ENST00000688450.1:ENST00000693393.1:ENST00000688423.1:ENST00000690623.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	44	2	2.38101	2.53038	2.67975	0.0456017	0.0252505	0.164236	0.12011
chr3	160405877	160405976	1544660	0	+	0.292929	(0.28,0.32]	chr3	160690	8	INTRON	INTRON	SMC4	ENSG00000113810.16	ENST00000472282.5:ENST00000472991.5:ENST00000357388.8:ENST00000469762.5:ENST00000468653.5:ENST00000467468.5:ENST00000469858.5:ENST00000489573.5:ENST00000462787.5:ENST00000344722.5:ENST00000470240.5:ENST00000497984.5:ENST00000487747.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	44	2	2.38101	2.53038	2.67975	0.0456017	0.0252505	0.164236	0.12011
chr7	111277895	111277994	3621261	0	-	0.333333	(0.32,0.35]	chr7	337093	3140	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	65	2	1.73318	2.53024	3.3273	0.0462868	0.00218894	0.150684	0.0435144
chr1	28229730	28229830	409331	0	-	0.39	(0.378,0.408]	chr1	49279	2	SS5_PROX	SS5_PROX:INTRON	DNAJC8	ENSG00000126698.11	ENST00000263697.6:ENST00000489277.5:ENST00000482674.5:ENST00000488868.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	48	2	1.94681	2.530205	3.1136	0.0457723	0.00443339	0.149888	0.061054
chr17	67174735	67174834	6825108	0	-	0.393939	(0.378,0.408]	chr17	674474	66	INTRON	INTRON	HELZ	ENSG00000198265.12	ENST00000358691.10:ENST00000579953.5:ENST00000580168.5:ENST00000417253.7:ENST00000578783.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:nonsense_mediated_decay	3	48	2	1.94681	2.530205	3.1136	0.0457723	0.00443339	0.149888	0.061054
chr6	35644742	35644842	3087078	0	-	0.4	(0.378,0.408]	chr6	288789	15	INTRON	INTRON	FKBP5	ENSG00000096060.15	ENST00000536438.5:ENST00000539068.5:ENST00000357266.9:ENST00000542713.1	protein_coding	protein_coding	protein_coding	protein_coding	3	48	2	1.94681	2.530205	3.1136	0.0457723	0.00443339	0.149888	0.061054
chr7	105542849	105542949	3375796	0	+	0.41	(0.408,0.44]	chr7	316063	2	SS5_PROX	SS5_PROX:INTRON	RINT1	ENSG00000135249.8	ENST00000467392.5:ENST00000493041.5:ENST00000257700.7:ENST00000497979.5:ENST00000493258.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	47	2	1.74775	2.53016	3.31257	0.0735403	0.00198621	0.190238	0.0411469
chr19	49804707	49804791	7091237	0	+	0.428571	(0.408,0.44]	chr19	710410	3	INTRON	INTRON	AP2A1	ENSG00000196961.13	ENST00000354293.10:ENST00000359032.9:ENST00000597774.5:ENST00000594838.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	77	2	1.49971	2.53014	3.56057	0.0298505	9.67143e-4	0.142135	0.0282401
chr21	39297723	39297822	7465383	0	-	0.363636	(0.35,0.378]	chr21	760563	14	UTR3	UTR3:EXON_MRNA:INTRON	BRWD1	ENSG00000185658.14	ENST00000333229.6:ENST00000342449.8:ENST00000380800.7:ENST00000341322.4	protein_coding	protein_coding	protein_coding	protein_coding	8	128	2	2.25522	2.53012	2.80502	0.00456563	2.28494e-4	0.0595107	0.0133228
chr2	241333833	241333932	1053798	0	+	0.444444	(0.44,0.476]	chr2	112223	74	INTRON	INTRON	SEPTIN2	ENSG00000168385.18	ENST00000391973.6:ENST00000428282.5:ENST00000492978.5:ENST00000360051.7:ENST00000407017.5:ENST00000445030.5:ENST00000428524.5:ENST00000469434.5:ENST00000616972.4:ENST00000495463.5:ENST00000482304.5:ENST00000475474.5:ENST00000401990.5:ENST00000469175.5:ENST00000407971.5:ENST00000457335.5:ENST00000436795.5:ENST00000494824.5:ENST00000411484.5:ENST00000462147.5:ENST00000434955.5:ENST00000466211.5:ENST00000391971.7:ENST00000402092.6:ENST00000484740.1:ENST00000473479.5:ENST00000464128.5:ENST00000441533.5:ENST00000467971.5:ENST00000425899.5:ENST00000443492.5:ENST00000437066.5:ENST00000420786.5:ENST00000475823.5:ENST00000449239.5:ENST00000366210.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	47	2	2.46135	2.530115	2.59888	0.0374637	0.00487719	0.140008	0.0640618
chr7	152136735	152136831	3678211	0	-	0.458333	(0.44,0.476]	chr7	341365	20	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	KMT2C	ENSG00000055609.21	ENST00000360104.8:ENST00000262189.11:ENST00000418061.2:ENST00000680877.1:ENST00000424877.6:ENST00000679560.1:ENST00000682040.1:ENST00000683640.1:ENST00000682116.1:ENST00000683120.1:ENST00000682824.1:ENST00000681923.1:ENST00000679393.1:ENST00000683200.1:ENST00000684768.1:ENST00000680029.1:ENST00000683337.1:ENST00000682629.1:ENST00000683178.1:ENST00000682137.1:ENST00000683502.1:ENST00000684261.1:ENST00000684685.1:ENST00000682283.1:ENST00000473186.5:ENST00000684649.1:ENST00000679882.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	75	2	1.90381	2.5301	3.15639	0.0260626	3.93757e-4	0.122153	0.0178567
chr18	9574769	9574869	6945906	0	-	0.45	(0.44,0.476]	chr18	686985	37	INTRON	INTRON	PPP4R1	ENSG00000154845.16	ENST00000400555.7:ENST00000400556.8:ENST00000285124.12	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	55	2	2.03266	2.5300849999999997	3.02751	0.0155853	0.00715968	0.109411	0.0723634
chr5	180861014	180861114	2783557	0	-	0.69	(0.57,1]	chr5	262841	4	SS5_PROX	SS5_PROX:INTRON	ZFP62	ENSG00000196670.14	ENST00000506377.5:ENST00000502412.2:ENST00000512132.5:ENST00000506439.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	30	2	1.92756	2.53005	3.13254	0.0220439	0.00310655	0.115395	0.0512344
chr16	89890921	89891018	6422615	0	+	0.443299	(0.44,0.476]	chr16	616751	4	INTRON	INTRON	TCF25	ENSG00000141002.20	ENST00000640279.1:ENST00000263347.11:ENST00000263346.13:ENST00000561958.5:ENST00000565196.5:ENST00000564652.5:ENST00000568412.5:ENST00000566751.5:ENST00000562256.5:ENST00000568409.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	55	2	1.98146	2.53004	3.07862	0.0186013	0.0060153	0.117264	0.0674604
chr3	87858409	87858509	1455669	0	+	0.38	(0.378,0.408]	chr3	153149	359	INTRON	INTRON	HTR1F	ENSG00000179097.7	ENST00000319595.7	protein_coding	protein_coding	protein_coding	protein_coding	6	90	2	2.1516	2.5299750000000003	2.90835	0.0065185	0.00133715	0.0699952	0.0335955
chr20	17966106	17966205	7320545	0	-	0.474747	(0.44,0.476]	chr20	745337	33	INTRON	INTRON	SNX5	ENSG00000089006.17	ENST00000377768.7:ENST00000490175.5:ENST00000377759.9:ENST00000431277.5:ENST00000419004.2:ENST00000474883.5:ENST00000469704.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	102	2	2.12263	2.5298350000000003	2.93704	0.00692375	2.76819e-4	0.0718189	0.0148174
chr6	36031355	36031455	2853090	0	+	0.34	(0.32,0.35]	chr6	269622	18	INTRON	INTRON	MAPK14	ENSG00000112062.11	ENST00000622903.4:ENST00000229795.7:ENST00000468133.5:ENST00000229794.9:ENST00000310795.8:ENST00000491957.5:ENST00000496250.5:ENST00000474429.5:ENST00000472333.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	40	2	2.48693	2.52978	2.57263	0.0338094	0.0312297	0.146709	0.13151
chr11	2981401	2981501	4891888	0	-	0.39	(0.378,0.408]	chr11	458354	3	SS5_PROX	SS5_PROX:INTRON	NAP1L4	ENSG00000205531.13	ENST00000620138.4:ENST00000380542.9:ENST00000526115.5:ENST00000532325.6:ENST00000448187.5:ENST00000399614.6:ENST00000430811.5:ENST00000529361.5:ENST00000528968.5:ENST00000530064.5:ENST00000526842.5:ENST00000531291.5:ENST00000455338.6:ENST00000534372.1	protein_coding	protein_coding	protein_coding	protein_coding	15	212	2	2.45594	2.529555	2.60317	4.9423e-4	8.86275e-5	0.0206664	0.00792076
chr20	38927425	38927524	7272433	0	+	0.343434	(0.32,0.35]	chr20	739054	1	INTRON	INTRON	FAM83D	ENSG00000101447.15	ENST00000619304.4:ENST00000619850.2	protein_coding	protein_coding	protein_coding	protein_coding	7	123	2	2.18299	2.5295050000000003	2.87602	0.00505063	7.58835e-4	0.0646039	0.025219
chr3	6605642	6605742	1357300	0	+	0.32	(0.28,0.32]	chr3	142522	212	INTRON	INTRON	ENSG00000189229	ENSG00000189229.12	ENST00000433639.1:ENST00000655754.1:ENST00000658468.1:ENST00000669512.1:ENST00000667028.1:ENST00000655541.1:ENST00000668643.1:ENST00000671568.1:ENST00000671036.1:ENST00000669798.1:ENST00000655753.1:ENST00000655856.1:ENST00000658398.1:ENST00000661518.1:ENST00000661279.1:ENST00000655495.1:ENST00000663041.1:ENST00000659827.1:ENST00000667716.1:ENST00000668416.1:ENST00000658133.1:ENST00000342990.4:ENST00000660054.1:ENST00000671370.1	lncRNA	lncRNA	lncRNA	lncRNA	5	80	2	1.72287	2.529415	3.33596	0.0286502	0.00342993	0.139456	0.0517761
chr2	111484441	111484541	1211705	0	-	0.5	(0.476,0.515]	chr2	128939	40	INTRON	INTRON	MIR4435-2HG	ENSG00000172965.17	ENST00000645030.2:ENST00000642191.1:ENST00000673798.1:ENST00000645051.2:ENST00000673649.1:ENST00000669658.1:ENST00000669917.1:ENST00000661559.1:ENST00000653687.1:ENST00000667670.1:ENST00000609220.2:ENST00000656760.1:ENST00000609902.6:ENST00000666683.1:ENST00000674070.1:ENST00000662335.1:ENST00000664422.1:ENST00000673775.1:ENST00000674092.1:ENST00000673958.1:ENST00000658936.1:ENST00000662635.1:ENST00000666204.1:ENST00000659458.1:ENST00000664443.1:ENST00000670295.1:ENST00000661655.1:ENST00000666390.1:ENST00000659079.1:ENST00000660442.1:ENST00000664009.1:ENST00000439362.6:ENST00000654473.1:ENST00000664999.1:ENST00000673728.1:ENST00000659791.1:ENST00000666144.1:ENST00000659933.1:ENST00000670715.1:ENST00000653568.1:ENST00000643013.1:ENST00000673866.1:ENST00000443467.6:ENST00000669875.1:ENST00000673653.1:ENST00000673988.1:ENST00000661945.1:ENST00000669515.1:ENST00000431385.6:ENST00000656416.1:ENST00000674037.1:ENST00000432818.5:ENST00000674013.1:ENST00000444301.5:ENST00000673964.1:ENST00000673845.1:ENST00000673756.1:ENST00000673960.1:ENST00000673804.1:ENST00000673632.1:ENST00000453478.2:ENST00000673937.1:ENST00000673654.1:ENST00000409569.2:ENST00000674087.1:ENST00000419736.5:ENST00000673840.1:ENST00000674045.1:ENST00000643766.1:ENST00000308604.5:ENST00000604981.5:ENST00000673894.1:ENST00000441075.1:ENST00000673878.1	lncRNA	lncRNA	lncRNA	lncRNA	2	34	2	2.40608	2.52938	2.65268	0.0425709	0.0201975	0.148082	0.121243
chr6	75615166	75615266	2905075	0	+	0.51	(0.476,0.515]	chr6	274477	122	INTRON	INTRON	SENP6	ENSG00000112701.18	ENST00000370010.6:ENST00000447266.7:ENST00000327284.12:ENST00000493959.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	34	2	2.40608	2.52938	2.65268	0.0425709	0.0201975	0.148082	0.121243
chr15	63684961	63685061	6199371	0	-	0.45	(0.44,0.476]	chr15	591250	38	INTRON	INTRON	HERC1	ENSG00000103657.14	ENST00000443617.7	protein_coding	protein_coding	protein_coding	protein_coding	7	98	2	2.15426	2.52933	2.9044	0.00372059	0.00132926	0.0535094	0.0335085
chr3	177178399	177178499	1872258	0	-	0.33	(0.32,0.35]	chr3	187438	71	INTRON	INTRON	TBL1XR1	ENSG00000177565.18	ENST00000457928.7:ENST00000430069.5:ENST00000673974.1:ENST00000352800.10:ENST00000422442.6:ENST00000428970.5:ENST00000424913.5:ENST00000437738.5:ENST00000431421.5:ENST00000635794.1:ENST00000630796.2:ENST00000450267.5:ENST00000630833.2:ENST00000431674.5:ENST00000422066.5:ENST00000443315.5:ENST00000627825.2:ENST00000427349.5:ENST00000413084.5:ENST00000637137.1:ENST00000491623.2:ENST00000637544.1:ENST00000636187.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	112	2	2.36431	2.52926	2.69421	0.00484681	0.00127288	0.0605691	0.0331457
chr4	119420586	119420680	2230358	0	-	0.351064	(0.35,0.378]	chr4	218481	2	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	GTF2IP12	ENSG00000283050.3	ENST00000651444.1:ENST00000634317.1:ENST00000652280.1	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript	6	98	2	2.49218	2.52926	2.56634	0.00348124	0.00190773	0.0521496	0.0403772
chr7	6031929	6032028	3475962	0	-	0.515152	(0.476,0.515]	chr7	325180	25	INTRON	INTRON	EIF2AK1	ENSG00000086232.13	ENST00000199389.11	protein_coding	protein_coding	protein_coding	protein_coding	6	86	2	2.51682	2.529195	2.54157	0.00697457	9.59562e-4	0.0718189	0.0284801
chr13	50564113	50564213	5495834	0	+	0.32	(0.28,0.32]	chr13	526202	304	INTRON	INTRON	DLEU1	ENSG00000176124.15	ENST00000470726.7:ENST00000479420.5:ENST00000647700.1:ENST00000484869.6	lncRNA	lncRNA	lncRNA	lncRNA	3	59	2	2.14002	2.5291699999999997	2.91832	0.0304107	0.0102484	0.130461	0.089002
chr1	19911245	19911345	41036	0	+	0.4	(0.378,0.408]	chr1	4832	36	UTR3	UTR3:EXON_MRNA	OTUD3	ENSG00000169914.6	ENST00000375120.4	protein_coding	protein_coding	protein_coding	protein_coding	7	106	2	2.52074	2.529135	2.53753	0.00271682	9.57797e-4	0.0467523	0.0284518
chr17	32178296	32178395	6597186	0	+	0.565657	(0.515,0.57]	chr17	641762	17	INTRON	INTRON	RHOT1	ENSG00000126858.19	ENST00000333942.10:ENST00000358365.7:ENST00000583994.5:ENST00000545287.7:ENST00000354266.7:ENST00000581031.5:ENST00000581094.5:ENST00000578205.5:ENST00000580976.1:ENST00000394692.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	64	2	1.97035	2.52912	3.08789	0.0195832	4.83127e-4	0.109483	0.0199261
chr19	5096562	5096662	7004706	0	+	0.67	(0.57,1]	chr19	694855	137	INTRON	INTRON	KDM4B	ENSG00000127663.15	ENST00000159111.9:ENST00000611640.4:ENST00000381759.8:ENST00000536461.5:ENST00000589104.5:ENST00000588961.1:ENST00000588361.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	30	2	1.79063	2.529115	3.2676	0.0356001	0.00176203	0.15159	0.0376652
chr11	68509751	68509850	4817824	0	+	0.494949	(0.476,0.515]	chr11	448913	41	INTRON	INTRON	PPP6R3	ENSG00000110075.15	ENST00000530427.5:ENST00000528635.5:ENST00000529907.5:ENST00000533127.5:ENST00000534534.5:ENST00000529344.5:ENST00000524845.5:ENST00000393800.7:ENST00000265637.8:ENST00000524904.5:ENST00000393801.7:ENST00000265636.9:ENST00000529710.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	56	2	2.29359	2.529095	2.7646	0.0162075	0.00584957	0.101453	0.0689807
chr17	22163551	22163651	6579299	0	+	0.4	(0.378,0.408]	chr17	639556	723	INTRON	INTRON	UBBP4	ENSG00000263563.7	ENST00000648259.1:ENST00000688301.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	3	48	2	1.88729	2.52909	3.17089	0.0532327	0.00357279	0.162538	0.0548435
chr7	92244986	92245084	3570160	0	-	0.397959	(0.378,0.408]	chr7	332585	30	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	ENSG00000289027:KRIT1	ENSG00000289027.1:ENSG00000001631.17	ENST00000692281.1:ENST00000394507.5:ENST00000692807.1:ENST00000340022.6:ENST00000394505.7:ENST00000458177.7:ENST00000684808.1:ENST00000444960.6:ENST00000691239.1:ENST00000686094.1:ENST00000686527.1:ENST00000690529.1:ENST00000689411.1:ENST00000688665.1:ENST00000692157.1:ENST00000686043.1:ENST00000690720.1:ENST00000692690.1:ENST00000690908.1:ENST00000691827.1:ENST00000690751.1:ENST00000425073.2:ENST00000687876.1:ENST00000690904.1:ENST00000688781.1:ENST00000686785.1:ENST00000689556.1:ENST00000688314.1:ENST00000688404.1:ENST00000690292.1:ENST00000687135.1:ENST00000454017.6:ENST00000692361.1:ENST00000689778.1:ENST00000686619.1:ENST00000688766.1:ENST00000685431.1:ENST00000689539.1:ENST00000412043.6:ENST00000394503.6:ENST00000433016.6:ENST00000445516.2:ENST00000686233.1:ENST00000692205.1:ENST00000687627.1:ENST00000688196.1:ENST00000692000.1:ENST00000692428.1:ENST00000685285.1:ENST00000691622.1:ENST00000430102.6:ENST00000440209.5:ENST00000691222.1:ENST00000687517.1:ENST00000422347.6:ENST00000689789.1:ENST00000489087.2:ENST00000691890.1:ENST00000413688.6:ENST00000425919.6:ENST00000452773.6:ENST00000466166.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	48	2	1.88729	2.52909	3.17089	0.0532327	0.00357279	0.162538	0.0548435
chr8	31141875	31141958	3729039	0	+	0.385542	(0.378,0.408]	chr8	346663	1	SS5_PROX	SS5_PROX:INTRON	WRN	ENSG00000165392.11	ENST00000650667.1:ENST00000298139.7:ENST00000521620.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	48	2	1.88729	2.52909	3.17089	0.0532327	0.00357279	0.162538	0.0548435
chr1	193067148	193067247	284337	0	+	0.383838	(0.378,0.408]	chr1	32673	66	INTRON	INTRON	RO60	ENSG00000116747.13	ENST00000432079.5:ENST00000400968.7:ENST00000415442.2:ENST00000460715.2:ENST00000506303.1:ENST00000367446.7:ENST00000367443.5:ENST00000367444.7:ENST00000367445.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	48	2	2.00398	2.528955	3.05393	0.0393906	0.00551532	0.143072	0.0672816
chr14	37156981	37157081	5877857	0	-	0.39	(0.378,0.408]	chr14	558013	2816	INTRON	INTRON	SLC25A21	ENSG00000183032.12	ENST00000331299.6:ENST00000555449.5:ENST00000557611.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	48	2	2.00398	2.528955	3.05393	0.0393906	0.00551532	0.143072	0.0672816
chr20	17943681	17943778	7320300	0	-	0.381443	(0.378,0.408]	chr20	745269	6	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SNX5	ENSG00000089006.17	ENST00000377768.7:ENST00000490175.5:ENST00000483485.5:ENST00000377759.9:ENST00000606570.1:ENST00000491090.5:ENST00000476648.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	48	2	2.00398	2.528955	3.05393	0.0393906	0.00551532	0.143072	0.0672816
chr1	244653453	244653552	347713	0	+	0.575758	(0.57,1]	chr1	40348	2	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	DESI2	ENSG00000121644.19	ENST00000263831.11:ENST00000302550.16:ENST00000484738.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	19	2	2.52405	2.52894	2.53383	0.0263139	0.02547	0.133676	0.12011
chr10	125103551	125103650	4713766	0	-	0.575758	(0.57,1]	chr10	434907	24	INTRON	INTRON	CTBP2	ENSG00000175029.17	ENST00000337195.9:ENST00000411419.6:ENST00000494626.6:ENST00000531469.5:ENST00000460976.5:ENST00000476817.1:ENST00000530884.1:ENST00000530930.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	19	2	2.52405	2.52894	2.53383	0.0263139	0.02547	0.133676	0.12011
chr11	90217746	90217843	5016492	0	-	0.587629	(0.57,1]	chr11	473226	1	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	CHORDC1	ENSG00000110172.12	ENST00000320585.11:ENST00000457199.6:ENST00000533724.5:ENST00000525317.5:ENST00000533772.5:ENST00000530765.5:ENST00000533062.5:ENST00000529402.1:ENST00000533739.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	19	2	2.52405	2.52894	2.53383	0.0263139	0.02547	0.133676	0.12011
chr16	3134308	3134408	6433257	0	-	0.66	(0.57,1]	chr16	619153	4	SS5_PROX	SS5_PROX:INTRON	ZNF213-AS1	ENSG00000263072.9	ENST00000674022.1:ENST00000673666.1:ENST00000572691.2:ENST00000664624.1:ENST00000657201.1:ENST00000657996.1:ENST00000576490.2:ENST00000692817.1:ENST00000686529.1:ENST00000691772.1:ENST00000685085.1:ENST00000686892.1:ENST00000571963.5:ENST00000573447.2:ENST00000571449.2:ENST00000652946.1:ENST00000658602.1:ENST00000575089.2	lncRNA	lncRNA	lncRNA	lncRNA	2	19	2	2.52405	2.52894	2.53383	0.0263139	0.02547	0.133676	0.12011
chr19	1219872	1219913	6994340	0	+	0.634146	(0.57,1]	chr19	692911	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	STK11	ENSG00000118046.17	ENST00000326873.12:ENST00000652231.1:ENST00000589152.5:ENST00000585851.1:ENST00000586358.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	19	2	2.52405	2.52894	2.53383	0.0263139	0.02547	0.133676	0.12011
chr3	25664028	25664128	1642161	0	-	0.6	(0.57,1]	chr3	168599	4	SS5_PROX	SS5_PROX:INTRON	TOP2B	ENSG00000077097.16	ENST00000264331.9:ENST00000435706.6:ENST00000424225.1	protein_coding	protein_coding	protein_coding	protein_coding	2	19	2	2.52405	2.52894	2.53383	0.0263139	0.02547	0.133676	0.12011
chr5	876807	876902	2564457	0	-	0.578947	(0.57,1]	chr5	245470	2	INTRON	INTRON	BRD9	ENSG00000028310.18	ENST00000493082.5:ENST00000467963.6:ENST00000495265.5:ENST00000490814.6:ENST00000495794.5:ENST00000483234.5:ENST00000489816.5:ENST00000483173.5:ENST00000519112.5:ENST00000518251.1:ENST00000475706.5:ENST00000466684.5:ENST00000519838.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	19	2	2.52405	2.52894	2.53383	0.0263139	0.02547	0.133676	0.12011
chr6	10923906	10923995	2812130	0	+	0.58427	(0.57,1]	chr6	264620	8	INTRON	INTRON	SYCP2L	ENSG00000153157.13	ENST00000341041.8:ENST00000283141.11:ENST00000543878.5:ENST00000487561.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	19	2	2.52405	2.52894	2.53383	0.0263139	0.02547	0.133676	0.12011
chr2	28753874	28753974	724670	0	+	0.51	(0.476,0.515]	chr2	83720	13	INTRON	INTRON	PPP1CB	ENSG00000213639.10	ENST00000455580.5:ENST00000420282.5:ENST00000441461.5:ENST00000427786.1:ENST00000358506.6:ENST00000296122.10:ENST00000395366.3:ENST00000464273.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	86	2	1.91368	2.52889	3.1441	0.0135123	5.63876e-4	0.101363	0.0219303
chr6	154776133	154776231	3002245	0	+	0.357143	(0.35,0.378]	chr6	280743	17	INTRON	INTRON	SCAF8	ENSG00000213079.10	ENST00000367186.7:ENST00000417268.3:ENST00000461219.5:ENST00000367178.8:ENST00000464628.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	81	2	2.52395	2.5288250000000003	2.5337	0.00824736	0.0022093	0.0773378	0.0435144
chr7	119679161	119679261	3628128	0	-	0.35	(0.32,0.35]	chr7	337315	1787	INTRON	INTRON	LINC02476	ENSG00000225546.6	ENST00000660268.1	lncRNA	lncRNA	lncRNA	lncRNA	4	72	2	2.3471	2.528815	2.71053	0.0156413	0.00346747	0.101393	0.0539802
chr6	7155486	7155585	2798842	0	+	0.555556	(0.515,0.57]	chr6	263733	143	INTRON	INTRON	RREB1	ENSG00000124782.21	ENST00000379933.7:ENST00000491191.5:ENST00000471433.5:ENST00000379938.7:ENST00000467782.5:ENST00000349384.10:ENST00000334984.10:ENST00000475946.5:ENST00000483150.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	61	2	1.33814	2.5287800000000002	3.71942	0.063703	2.61221e-4	0.177689	0.014326
chr6	143443861	143443960	3242301	0	-	0.414141	(0.408,0.44]	chr6	301155	20	INTRON	INTRON	ADAT2	ENSG00000189007.16	ENST00000237283.9	protein_coding	protein_coding	protein_coding	protein_coding	5	75	2	2.26617	2.528705	2.79124	0.00649402	0.00276922	0.0734343	0.0469265
chr1	174247032	174247130	257988	0	+	0.387755	(0.378,0.408]	chr1	30761	8	INTRON	INTRON	RABGAP1L	ENSG00000152061.24	ENST00000357444.10:ENST00000251507.8:ENST00000681986.1:ENST00000457696.1	protein_coding	protein_coding	protein_coding	protein_coding	4	65	2	2.46345	2.528625	2.5938	0.00827342	0.00614976	0.0813266	0.0676501
chr6	110993784	110993884	2939421	0	+	0.39	(0.378,0.408]	chr6	276859	16	INTRON	INTRON	RPF2	ENSG00000197498.13	ENST00000368864.8:ENST00000441448.7:ENST00000607388.1:ENST00000425871.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	65	2	2.46345	2.528625	2.5938	0.00827342	0.00614976	0.0813266	0.0676501
chr16	28733071	28733165	6334136	0	+	0.446809	(0.44,0.476]	chr16	606469	5	INTRON	INTRON	EIF3C	ENSG00000184110.15	ENST00000566501.5:ENST00000395587.5:ENST00000331666.11:ENST00000564243.5:ENST00000566866.5:ENST00000565932.5:ENST00000569005.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	89	2	2.41757	2.528595	2.63962	0.00417342	0.00126329	0.057064	0.0329641
chr12	57361369	57361469	5338561	0	-	0.38	(0.378,0.408]	chr12	510710	200	INTRON	INTRON	R3HDM2	ENSG00000179912.21	ENST00000402412.6:ENST00000347140.7:ENST00000634871.1:ENST00000448732.1	protein_coding	protein_coding	protein_coding	protein_coding	9	130	2	2.46688	2.5285650000000004	2.59025	0.00217503	3.71946e-4	0.0417893	0.0173669
chr2	144439097	144439197	1240987	0	-	0.38	(0.378,0.408]	chr2	131703	82	INTRON	INTRON	ZEB2	ENSG00000169554.23	ENST00000636471.1:ENST00000627532.3:ENST00000638128.1:ENST00000637304.1:ENST00000636179.1:ENST00000636820.1:ENST00000637045.1:ENST00000419938.5:ENST00000409487.7:ENST00000440875.6:ENST00000636732.2:ENST00000636026.2:ENST00000675069.1:ENST00000689298.1:ENST00000539609.7:ENST00000558170.6:ENST00000303660.8:ENST00000427902.5:ENST00000637267.2:ENST00000392861.6:ENST00000431672.4:ENST00000409211.5:ENST00000465308.5:ENST00000434448.5:ENST00000472146.5:ENST00000461784.3:ENST00000476394.5:ENST00000637591.2:ENST00000479735.1:ENST00000453352.5:ENST00000435831.5:ENST00000444559.5:ENST00000630572.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	77	2	2.50099	2.52853	2.55607	0.00704647	0.00245021	0.0718189	0.0457892
chr22	19508991	19509091	7477139	0	+	0.27	[0,0.28]	chr22	762457	3	SS5_PROX	SS5_PROX:INTRON	CDC45	ENSG00000093009.11	ENST00000407835.6:ENST00000437685.6:ENST00000438587.6:ENST00000672837.1:ENST00000263201.7:ENST00000404724.7:ENST00000471470.1:ENST00000671972.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	111	2	2.13176	2.52851	2.92526	0.0135097	0.00293591	0.101363	0.0483234
chr18	3607126	3607222	6867433	0	+	0.291667	(0.28,0.32]	chr18	680392	7	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	DLGAP1-AS2	ENSG00000262001.2	ENST00000572856.1:ENST00000692104.1:ENST00000687483.1:ENST00000693339.1:ENST00000689896.1:ENST00000691824.1	lncRNA	lncRNA	lncRNA	lncRNA	13	228	2	2.52448	2.528385	2.53229	0.00187849	1.33969e-4	0.0390734	0.00998237
chr1	19197433	19197501	386704	0	-	0.470588	(0.44,0.476]	chr1	46114	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	UBR4	ENSG00000127481.15	ENST00000375254.8	protein_coding	protein_coding	protein_coding	protein_coding	6	90	2	2.14666	2.528285	2.90991	0.0116436	3.20441e-4	0.0889659	0.0159645
chr3	143024294	143024383	1529319	0	+	0.303371	(0.28,0.32]	chr3	159391	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	U2SURP	ENSG00000163714.18	ENST00000488497.7:ENST00000473835.7:ENST00000493598.6:ENST00000463563.6:ENST00000488587.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	114	2	2.36049	2.5282549999999997	2.69602	0.00700135	0.00126382	0.0718189	0.0329641
chr7	151518731	151518831	3674915	0	-	0.47	(0.44,0.476]	chr7	341212	3	SS5_PROX	SS5_PROX:INTRON	RHEB	ENSG00000106615.10	ENST00000262187.10:ENST00000472642.5:ENST00000478470.5:ENST00000496004.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	76	2	2.08211	2.528195	2.97428	0.0130715	0.00125568	0.0996047	0.0323608
chrX	154708337	154708437	7914889	0	-	0.36	(0.35,0.378]	chrX	806091	79	INTRON	INTRON	GAB3	ENSG00000160219.12	ENST00000496390.5:ENST00000424127.3:ENST00000369575.7:ENST00000369568.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	132	2	2.33792	2.528175	2.71843	0.0024225	5.87837e-4	0.0454587	0.0224695
chr6	15285039	15285139	2823336	0	+	0.27	[0,0.28]	chr6	265190	357	INTRON	INTRON	JARID2	ENSG00000008083.14	ENST00000341776.7:ENST00000397311.4	protein_coding	protein_coding	protein_coding	protein_coding	7	139	2	1.63983	2.528165	3.4165	0.0354096	2.07442e-4	0.137535	0.012556
chr13	110878638	110878738	5650268	0	-	0.26	[0,0.28]	chr13	538327	2	UTR3	UTR3:EXON_MRNA	ANKRD10	ENSG00000088448.14	ENST00000267339.6	protein_coding	protein_coding	protein_coding	protein_coding	3	67	2	2.09899	2.52814	2.95729	0.0371453	0.0101824	0.139304	0.089002
chr3	141883755	141883855	1526146	0	+	0.4	(0.378,0.408]	chr3	159005	58	INTRON	INTRON	ATP1B3	ENSG00000069849.11	ENST00000475483.5:ENST00000465172.5:ENST00000286371.8:ENST00000466678.5:ENST00000462082.1:ENST00000495216.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	157	2	2.10194	2.528125	2.95431	9.54322e-4	4.09829e-4	0.0283984	0.0185932
chr21	43100707	43100801	7468274	0	-	0.37234	(0.35,0.378]	chr21	761116	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	U2AF1	ENSG00000160201.12	ENST00000291552.9:ENST00000380276.6:ENST00000464750.5:ENST00000475639.5:ENST00000459639.5:ENST00000486519.5:ENST00000463599.5:ENST00000496462.1:ENST00000468039.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	60	2	1.92704	2.528045	3.12905	0.0228255	0.00566312	0.125469	0.0653997
chr5	66158418	66158516	2372632	0	+	0.357143	(0.35,0.378]	chr5	228660	8	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SREK1	ENSG00000153914.16	ENST00000521691.5:ENST00000334121.11:ENST00000520953.5:ENST00000522912.5:ENST00000524111.5:ENST00000380918.7:ENST00000284041.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	16	242	2	2.51709	2.52801	2.53893	4.68983e-4	6.83631e-5	0.0200452	0.00684369
chr1	84680587	84680687	496678	0	-	0.26	[0,0.28]	chr1	58895	2	SS3_PROX	SS3_PROX:INTRON	SSX2IP	ENSG00000117155.17	ENST00000342203.8:ENST00000437941.6:ENST00000481102.5:ENST00000476905.6:ENST00000605755.5:ENST00000603677.1:ENST00000422026.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	67	2	2.49527	2.528	2.56073	0.0436497	0.00743095	0.14882	0.0772645
chr12	89619598	89619698	5381058	0	-	0.27	[0,0.28]	chr12	513371	2	SS5_PROX	SS5_PROX:INTRON	ATP2B1	ENSG00000070961.16	ENST00000428670.8:ENST00000359142.7:ENST00000261173.6:ENST00000393164.6	protein_coding	protein_coding	protein_coding	protein_coding	3	67	2	2.49527	2.528	2.56073	0.0436497	0.00743095	0.14882	0.0772645
chr3	170094643	170094742	1860941	0	-	0.323232	(0.32,0.35]	chr3	186581	72	UTR3	UTR3:EXON_MRNA:INTRON	PHC3	ENSG00000173889.16	ENST00000484068.5:ENST00000495893.7	protein_coding	protein_coding	protein_coding	protein_coding	5	89	2	2.2664	2.527965	2.78953	0.0199969	7.22336e-4	0.109608	0.0245475
chr16	2754740	2754840	6279837	0	+	0.35	(0.32,0.35]	chr16	600760	7	INTRON	INTRON	SRRM2	ENSG00000167978.17	ENST00000576924.5:ENST00000301740.13:ENST00000575009.5:ENST00000576894.5:ENST00000575701.4:ENST00000630499.2:ENST00000576415.5:ENST00000571378.5:ENST00000574340.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	64	2	1.97654	2.527945	3.07935	0.0199113	0.00724137	0.120668	0.0729826
chr5	627575	627675	2313532	0	+	0.34	(0.32,0.35]	chr5	223852	26	INTRON	INTRON	CEP72	ENSG00000112877.8	ENST00000264935.6	protein_coding	protein_coding	protein_coding	protein_coding	4	64	2	1.97654	2.527945	3.07935	0.0199113	0.00724137	0.120668	0.0729826
chr5	53988113	53988213	2617685	0	-	0.35	(0.32,0.35]	chr5	248835	761	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	64	2	1.97654	2.527945	3.07935	0.0199113	0.00724137	0.120668	0.0729826
chr18	26299099	26299198	6885224	0	+	0.515152	(0.476,0.515]	chr18	682484	34	INTRON	INTRON	TAF4B	ENSG00000141384.13	ENST00000269142.10:ENST00000578121.5:ENST00000418698.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	46	2	2.10874	2.52783	2.94692	0.0285608	0.00794331	0.12666	0.0797304
chr1	246016159	246016259	675792	0	-	0.49	(0.476,0.515]	chr1	79713	277	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000391836.3:ENST00000464398.1:ENST00000453676.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	63	2	2.32001	2.527825	2.73564	0.0136217	0.00333144	0.101682	0.0512081
chr13	20021311	20021410	5453062	0	+	0.252525	[0,0.28]	chr13	522478	13	INTRON	INTRON	ZMYM2	ENSG00000121741.17	ENST00000382874.6:ENST00000610343.5:ENST00000382871.3	protein_coding	protein_coding	protein_coding	protein_coding	7	150	2	2.44525	2.5278150000000004	2.61038	0.0062932	0.00102823	0.0687526	0.0294094
chr19	1626393	1626486	7112849	0	-	0.44086	(0.44,0.476]	chr19	714635	3	INTRON	INTRON	TCF3	ENSG00000071564.17	ENST00000344749.9:ENST00000611869.5:ENST00000262965.12:ENST00000588136.7:ENST00000453954.6:ENST00000395423.7:ENST00000587235.6	protein_coding	protein_coding	protein_coding	protein_coding	6	89	2	2.36262	2.5277950000000002	2.69297	0.00333494	0.00255041	0.0528877	0.0449067
chr1	23038716	23038815	43951	0	+	0.383838	(0.378,0.408]	chr1	5258	77	INTRON	INTRON	KDM1A	ENSG00000004487.18	ENST00000692214.1:ENST00000686934.1:ENST00000689853.1:ENST00000465864.2:ENST00000691256.1:ENST00000688122.1:ENST00000692056.1:ENST00000692853.1:ENST00000689366.1:ENST00000686270.1:ENST00000685102.1:ENST00000690627.1:ENST00000686771.1:ENST00000692209.1:ENST00000686339.1:ENST00000691813.1:ENST00000693156.1:ENST00000688235.1:ENST00000692975.1:ENST00000687202.1:ENST00000691682.1:ENST00000691404.1:ENST00000691694.1:ENST00000688680.1:ENST00000356634.7:ENST00000400181.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	51	2	2.2259	2.527785	2.82967	0.0662381	0.00189968	0.181924	0.0402736
chr14	69386654	69386730	5916186	0	-	0.302632	(0.28,0.32]	chr14	562057	1	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	ERH	ENSG00000100632.11	ENST00000557016.6:ENST00000216520.6:ENST00000557697.1:ENST00000555373.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	58	2	2.42868	2.5277700000000003	2.62686	0.0289217	0.0105331	0.1274	0.0908969
chr16	58563551	58563650	6495699	0	-	0.292929	(0.28,0.32]	chr16	628558	28	INTRON	INTRON	CNOT1	ENSG00000125107.19	ENST00000317147.10:ENST00000569240.5:ENST00000567188.5:ENST00000441024.6:ENST00000569882.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	58	2	2.42868	2.5277700000000003	2.62686	0.0289217	0.0105331	0.1274	0.0908969
chr8	47713251	47713346	3751775	0	+	0.421053	(0.408,0.44]	chr8	348901	5	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SPIDR	ENSG00000164808.17	ENST00000541342.2:ENST00000518074.5:ENST00000297423.9:ENST00000524126.5:ENST00000524141.5:ENST00000522117.5:ENST00000521214.5:ENST00000519401.5:ENST00000519141.5:ENST00000517693.5:ENST00000519362.5:ENST00000522321.5:ENST00000518692.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	56	2	1.69172	2.52775	3.36378	0.0486032	0.0016048	0.153946	0.0367961
chr16	29514686	29514785	6470712	0	-	0.464646	(0.44,0.476]	chr16	625147	88	INTRON	INTRON	ENSG00000288632	ENSG00000288632.1	ENST00000675579.1	lncRNA	lncRNA	lncRNA	lncRNA	25	272	2	1.61972	2.5277250000000002	3.43573	0.0039884	3.66981e-6	0.0550271	0.00125059
chr5	171394278	171394377	2546634	0	+	0.484848	(0.476,0.515]	chr5	243099	9	INTRON	INTRON	NPM1	ENSG00000181163.14	ENST00000517671.5:ENST00000676613.1:ENST00000678186.1:ENST00000678267.1:ENST00000677297.1:ENST00000521672.6:ENST00000679190.1:ENST00000677467.1:ENST00000678280.1:ENST00000676625.1:ENST00000679006.1:ENST00000351986.10:ENST00000676504.1:ENST00000676589.1:ENST00000677357.1:ENST00000679233.1:ENST00000296930.10:ENST00000393820.2:ENST00000521260.2:ENST00000518587.2:ENST00000678774.1:ENST00000677600.1:ENST00000677741.1:ENST00000677325.1:ENST00000677672.1:ENST00000677907.1:ENST00000677904.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	132	2	2.18874	2.5277250000000002	2.86671	0.00255859	2.11053e-4	0.0466761	0.0132122
chr10	17656966	17657066	4399394	0	+	0.51	(0.476,0.515]	chr10	406150	122	INTRON	INTRON	STAM	ENSG00000136738.15	ENST00000377524.8:ENST00000377500.1:ENST00000445846.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	62	2	2.16377	2.52771	2.89165	0.0243026	0.00142068	0.12011	0.034662
chr10	28548550	28548650	4413959	0	+	0.23	[0,0.28]	chr10	407148	101	INTRON	INTRON	WAC	ENSG00000095787.24	ENST00000680735.1:ENST00000375664.8:ENST00000428935.6:ENST00000651598.1:ENST00000628285.3:ENST00000681112.1:ENST00000679570.1:ENST00000375646.5:ENST00000354911.9:ENST00000347934.8:ENST00000420266.6:ENST00000651885.1:ENST00000651441.1:ENST00000679398.1:ENST00000424454.5:ENST00000442148.6:ENST00000448193.5:ENST00000414108.6:ENST00000679428.1:ENST00000439676.5:ENST00000345541.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	143	2	1.33936	2.527695	3.71603	0.0334161	0.0011243	0.146709	0.0306963
chr9	128231785	128231885	4203347	0	+	0.54	(0.515,0.57]	chr9	384065	4	SS3_PROX	SS3_PROX:INTRON	DNM1	ENSG00000106976.21	ENST00000372923.8:ENST00000341179.11:ENST00000475805.5:ENST00000393594.7:ENST00000628346.2:ENST00000486160.3:ENST00000627543.2:ENST00000627061.2:ENST00000634267.2:ENST00000637999.1:ENST00000441149.6:ENST00000482638.6:ENST00000637317.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	75	2	2.32281	2.527695	2.73258	0.00260192	0.00252428	0.0470772	0.0446656
chr18	164439	164536	6854885	0	+	0.463918	(0.44,0.476]	chr18	679502	6	INTRON	INTRON	USP14	ENSG00000101557.15	ENST00000582707.5:ENST00000400266.7:ENST00000261601.8:ENST00000578942.5:ENST00000383589.6:ENST00000583119.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	62	2	2.19078	2.5276500000000004	2.86452	0.0226089	0.00159222	0.117489	0.0367961
chr5	150022768	150022868	2518886	0	+	0.43	(0.408,0.44]	chr5	240788	37	INTRON	INTRON	HMGXB3	ENSG00000113716.13	ENST00000613459.4:ENST00000503427.5:ENST00000502717.6	protein_coding	protein_coding	protein_coding	protein_coding	12	136	2	1.96068	2.52764	3.0946	0.0015599	7.51561e-4	0.0365263	0.0251179
chr21	43801675	43801773	7413744	0	+	0.591837	(0.57,1]	chr21	755659	4	INTRON	INTRON	RRP1	ENSG00000160214.13	ENST00000497547.2:ENST00000467112.5:ENST00000471909.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	53	2	2.34135	2.52763	2.71391	0.00191867	6.82348e-4	0.0405205	0.0239168
chr19	5977367	5977463	7125605	0	-	0.604167	(0.57,1]	chr19	717399	4	INTRON	INTRON	RANBP3	ENSG00000031823.14	ENST00000340578.10:ENST00000439268.6:ENST00000592771.5:ENST00000591092.5:ENST00000034275.12:ENST00000587479.2:ENST00000592621.5:ENST00000590623.5:ENST00000591736.5:ENST00000590953.5:ENST00000588879.5:ENST00000587159.5:ENST00000586117.5:ENST00000589353.5:ENST00000587463.5:ENST00000588010.5:ENST00000591124.5:ENST00000585339.5:ENST00000592133.5:ENST00000591881.5:ENST00000589886.5:ENST00000587263.5:ENST00000587956.5:ENST00000591333.5:ENST00000592266.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	39	2	2.32017	2.52758	2.73499	0.00488159	0.00237434	0.0640618	0.0438057
chr21	45109542	45109642	7418202	0	+	0.58	(0.57,1]	chr21	756262	344	INTRON	INTRON	ADARB1	ENSG00000197381.17	ENST00000462214.5:ENST00000460734.5:ENST00000348831.9:ENST00000389861.7:ENST00000389863.8:ENST00000492414.5:ENST00000496664.5:ENST00000437626.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	39	2	2.32017	2.52758	2.73499	0.00488159	0.00237434	0.0640618	0.0438057
chr4	39771447	39771546	1953728	0	+	0.666667	(0.57,1]	chr4	195650	103	INTRON	INTRON	UBE2K	ENSG00000078140.14	ENST00000510934.5:ENST00000261427.10:ENST00000438068.6:ENST00000513231.5:ENST00000503368.5:ENST00000445950.2:ENST00000510719.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	39	2	2.32017	2.52758	2.73499	0.00488159	0.00237434	0.0640618	0.0438057
chr5	136483852	136483952	2493580	0	+	0.44	(0.408,0.44]	chr5	238200	166	INTRON	INTRON	ENSG00000249803	ENSG00000249803.6	ENST00000653158.1:ENST00000446720.3:ENST00000665110.1:ENST00000511165.6:ENST00000666378.1:ENST00000657590.1:ENST00000658501.1:ENST00000660537.1:ENST00000659712.1	lncRNA	lncRNA	lncRNA	lncRNA	4	62	2	2.31565	2.52753	2.73941	0.0154718	0.002744	0.100909	0.0484022
chr2	96621156	96621256	1181019	0	-	0.3	(0.28,0.32]	chr2	126496	10	INTRON	INTRON	KANSL3	ENSG00000114982.19	ENST00000354204.10:ENST00000431828.6:ENST00000487070.5:ENST00000447759.5:ENST00000420155.5:ENST00000670907.1:ENST00000666923.1:ENST00000597150.5:ENST00000444759.5:ENST00000452268.5:ENST00000425656.5:ENST00000448075.1:ENST00000451819.5:ENST00000416138.1:ENST00000418735.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	58	2	2.13651	2.52751	2.91851	0.0265696	0.0130672	0.134088	0.093385
chr2	20265252	20265352	1075911	0	-	0.3	(0.28,0.32]	chr2	114960	14	INTRON	INTRON	PUM2	ENSG00000055917.16	ENST00000338086.9:ENST00000361078.7:ENST00000440577.5	protein_coding	protein_coding	protein_coding	protein_coding	6	108	2	2.25951	2.52746	2.79541	0.00397414	0.00376367	0.0577209	0.0539127
chr7	30571606	30571705	3513197	0	-	0.242424	[0,0.28]	chr7	327575	19	INTRON	INTRON	GARS1-DT	ENSG00000196295.13	ENST00000426529.6:ENST00000578245.5:ENST00000584621.5:ENST00000656284.1:ENST00000660767.1:ENST00000582145.5:ENST00000584199.5:ENST00000667338.1:ENST00000584108.5:ENST00000614950.4:ENST00000581794.6:ENST00000581665.6:ENST00000663944.1:ENST00000579024.5:ENST00000663462.1:ENST00000584372.5:ENST00000582733.5	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	3	66	2	2.41169	2.52739	2.64309	0.0308646	0.0122872	0.13151	0.0970106
chr2	75935671	75935771	817516	0	+	0.24	[0,0.28]	chr2	91391	628	INTRON	INTRON	ENSG00000287474	ENSG00000287474.1	ENST00000670606.1	lncRNA	lncRNA	lncRNA	lncRNA	4	90	2	2.45904	2.52737	2.5957	0.0137145	0.00656974	0.0949306	0.0736092
chr7	148718487	148718587	3443883	0	+	0.33	(0.32,0.35]	chr7	321168	180	INTRON	INTRON	CUL1	ENSG00000055130.18	ENST00000409469.5:ENST00000662716.1:ENST00000665936.1:ENST00000663044.1:ENST00000602748.5:ENST00000663835.1:ENST00000655324.1:ENST00000662132.1:ENST00000325222.9:ENST00000656001.1:ENST00000666124.1:ENST00000671421.1:ENST00000671397.1:ENST00000662670.1:ENST00000660240.1:ENST00000662975.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	54	2	2.51061	2.527345	2.54408	0.0364463	0.00659077	0.138959	0.0737338
chr4	118614725	118614824	2024975	0	+	0.252525	[0,0.28]	chr4	201331	54	INTRON	INTRON	ENSG00000260404	ENSG00000260404.4	ENST00000567913.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	3	66	2	2.15457	2.527195	2.89982	0.0269306	0.0158893	0.135288	0.101453
chr1	23326528	23326627	399410	0	-	0.515152	(0.476,0.515]	chr1	47865	24	INTRON	INTRON	HNRNPR	ENSG00000125944.21	ENST00000478691.5:ENST00000302271.11:ENST00000374616.7:ENST00000374612.5:ENST00000675048.1:ENST00000606561.5:ENST00000427764.3:ENST00000463552.5:ENST00000470941.5:ENST00000476451.2	protein_coding	protein_coding	protein_coding	protein_coding	2	34	2	2.3223	2.5271749999999997	2.73205	0.0519312	0.0159328	0.159306	0.109464
chr1	31047726	31047826	412716	0	-	0.49	(0.476,0.515]	chr1	49733	185	INTRON	INTRON	PUM1	ENSG00000134644.16	ENST00000426105.7:ENST00000373747.7:ENST00000257075.9:ENST00000424085.6:ENST00000525843.5:ENST00000440538.6:ENST00000373741.8:ENST00000373742.6:ENST00000526215.5:ENST00000525948.5:ENST00000480602.1:ENST00000524516.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	34	2	2.3223	2.5271749999999997	2.73205	0.0519312	0.0159328	0.159306	0.109464
chr11	36111592	36111692	4773311	0	+	0.48	(0.476,0.515]	chr11	441432	11	INTRON	INTRON	LDLRAD3	ENSG00000179241.13	ENST00000528989.5:ENST00000524419.5:ENST00000315571.6:ENST00000532490.1:ENST00000534091.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	34	2	2.3223	2.5271749999999997	2.73205	0.0519312	0.0159328	0.159306	0.109464
chr14	103691268	103691367	5828287	0	+	0.50505	(0.476,0.515]	chr14	553132	33	INTRON	INTRON	KLC1	ENSG00000126214.22	ENST00000348520.10:ENST00000334553.11:ENST00000555836.5:ENST00000347839.10:ENST00000452929.6:ENST00000554280.5:ENST00000557450.5:ENST00000554228.5:ENST00000634686.1:ENST00000246489.11:ENST00000537046.6:ENST00000535194.2:ENST00000538504.6:ENST00000557143.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	34	2	2.3223	2.5271749999999997	2.73205	0.0519312	0.0159328	0.159306	0.109464
chr2	161360190	161360290	901630	0	+	0.49	(0.476,0.515]	chr2	99704	410	INTRON	INTRON	PSMD14	ENSG00000115233.12	ENST00000409682.8:ENST00000437630.1	protein_coding	protein_coding	protein_coding	protein_coding	2	34	2	2.3223	2.5271749999999997	2.73205	0.0519312	0.0159328	0.159306	0.109464
chr5	139600935	139601034	2500903	0	+	0.484848	(0.476,0.515]	chr5	239037	1	INTRON	INTRON	UBE2D2	ENSG00000131508.16	ENST00000511725.5:ENST00000505007.5:ENST00000398733.8:ENST00000510470.1:ENST00000398734.8:ENST00000505548.5:ENST00000253815.3:ENST00000511691.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	34	2	2.3223	2.5271749999999997	2.73205	0.0519312	0.0159328	0.159306	0.109464
chr5	142141323	142141420	2505855	0	+	0.494845	(0.476,0.515]	chr5	239851	3	INTRON	INTRON	NDFIP1	ENSG00000131507.11	ENST00000253814.6	protein_coding	protein_coding	protein_coding	protein_coding	2	34	2	2.3223	2.5271749999999997	2.73205	0.0519312	0.0159328	0.159306	0.109464
chr8	61706193	61706293	3959032	0	-	0.51	(0.476,0.515]	chr8	363195	165	INTRON	INTRON	ASPH	ENSG00000198363.18	ENST00000379454.9:ENST00000445642.6:ENST00000356457.9:ENST00000519234.5:ENST00000518068.5:ENST00000517856.5:ENST00000379449.10	protein_coding	protein_coding	protein_coding	protein_coding	2	34	2	2.3223	2.5271749999999997	2.73205	0.0519312	0.0159328	0.159306	0.109464
chr8	29058492	29058592	3726558	0	+	0.48	(0.476,0.515]	chr8	346339	12	INTRON	INTRON	HMBOX1	ENSG00000147421.18	ENST00000522468.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	14	190	2	2.00746	2.527165	3.04687	0.00205968	1.97208e-5	0.0410051	0.00342281
chr11	47766303	47766391	4951407	0	-	0.272727	[0,0.28]	chr11	464452	6	INTRON	INTRON	FNBP4	ENSG00000109920.13	ENST00000263773.10:ENST00000534003.5:ENST00000540172.2:ENST00000542975.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	109	2	2.20536	2.52698	2.8486	0.0138742	0.00254189	0.0954405	0.0465056
chr10	67887016	67887116	4440423	0	+	0.48	(0.476,0.515]	chr10	409423	2	SS3_PROX	SS3_PROX:INTRON	SIRT1	ENSG00000096717.12	ENST00000212015.11:ENST00000432464.5:ENST00000497639.5:ENST00000473922.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	34	2	2.48527	2.526975	2.56868	0.03496	0.0256676	0.13747500000000001	0.133676
chr11	119131244	119131340	4874812	0	+	0.510417	(0.476,0.515]	chr11	455642	4	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HINFP	ENSG00000172273.13	ENST00000350777.7:ENST00000529354.1:ENST00000531360.5:ENST00000527354.5:ENST00000527410.3:ENST00000531022.5:ENST00000529610.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	34	2	2.48527	2.526975	2.56868	0.03496	0.0256676	0.13747500000000001	0.133676
chr14	103726931	103727021	5828642	0	+	0.5	(0.476,0.515]	chr14	553166	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	ZFYVE21	ENSG00000100711.14	ENST00000216602.10:ENST00000554255.5:ENST00000311141.7:ENST00000553512.5:ENST00000554630.5:ENST00000556610.5:ENST00000555501.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	34	2	2.48527	2.526975	2.56868	0.03496	0.0256676	0.13747500000000001	0.133676
chr19	15389549	15389649	7147818	0	-	0.49	(0.476,0.515]	chr19	722074	71	INTRON	INTRON	AKAP8L	ENSG00000011243.19	ENST00000594594.6:ENST00000679638.1:ENST00000595465.6:ENST00000599137.6:ENST00000397410.10:ENST00000609519.5:ENST00000593845.5:ENST00000680649.1:ENST00000596213.6:ENST00000681170.1:ENST00000680703.1:ENST00000680017.1:ENST00000595879.6:ENST00000680303.1:ENST00000679634.1:ENST00000681744.1:ENST00000680803.1:ENST00000681459.1:ENST00000680323.1:ENST00000680774.1:ENST00000680302.1:ENST00000680103.1:ENST00000680642.1:ENST00000681405.1:ENST00000680957.1:ENST00000680865.1:ENST00000680363.1:ENST00000595087.6:ENST00000600065.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	34	2	2.48527	2.526975	2.56868	0.03496	0.0256676	0.13747500000000001	0.133676
chr20	47529506	47529606	7281273	0	+	0.51	(0.476,0.515]	chr20	740469	271	INTRON	INTRON	NCOA3	ENSG00000124151.19	ENST00000371998.8:ENST00000372004.7:ENST00000371997.3	protein_coding	protein_coding	protein_coding	protein_coding	2	34	2	2.48527	2.526975	2.56868	0.03496	0.0256676	0.13747500000000001	0.133676
chr7	101886124	101886224	3367050	0	+	0.49	(0.476,0.515]	chr7	315215	668	INTRON	INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000497815.5:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000607092.1:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000558469.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	34	2	2.48527	2.526975	2.56868	0.03496	0.0256676	0.13747500000000001	0.133676
chr8	60560217	60560316	3758235	0	+	0.484848	(0.476,0.515]	chr8	349501	9	INTRON	INTRON	RAB2A	ENSG00000104388.15	ENST00000531289.5:ENST00000262646.12:ENST00000529579.5:ENST00000466595.5:ENST00000429861.5:ENST00000531098.1:ENST00000534260.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	34	2	2.48527	2.526975	2.56868	0.03496	0.0256676	0.13747500000000001	0.133676
chr9	91901485	91901585	4284780	0	-	0.49	(0.476,0.515]	chr9	393921	144	INTRON	INTRON	ROR2	ENSG00000169071.15	ENST00000375715.5:ENST00000375708.4:ENST00000495386.5:ENST00000546883.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	34	2	2.48527	2.526975	2.56868	0.03496	0.0256676	0.13747500000000001	0.133676
chr22	19054699	19054798	7551325	0	-	0.414141	(0.408,0.44]	chr22	771857	57	INTRON	INTRON	DGCR2	ENSG00000070413.20	ENST00000537045.5:ENST00000545799.5:ENST00000263196.12:ENST00000389262.8:ENST00000467659.1:ENST00000608548.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	97	2	2.03451	2.526965	3.01942	0.00626591	7.74413e-4	0.0685243	0.0256083
chr19	47161161	47161261	7084185	0	+	0.43	(0.408,0.44]	chr19	708792	36	INTRON	INTRON	SAE1	ENSG00000142230.13	ENST00000594144.5:ENST00000413379.7:ENST00000600706.5:ENST00000270225.12:ENST00000598840.5:ENST00000414294.6:ENST00000660039.1:ENST00000664120.1:ENST00000596995.1:ENST00000392776.3:ENST00000659110.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	56	2	1.64062	2.526925	3.41323	0.0557275	0.00129989	0.165463	0.0333764
chr9	37146276	37146373	4117916	0	+	0.381443	(0.378,0.408]	chr9	375376	9	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000322831.6:ENST00000461038.5:ENST00000488607.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	106	2	2.45465	2.52692	2.59919	0.00381582	6.41208e-4	0.0542786	0.0228915
chr11	31454380	31454478	4938679	0	-	0.428571	(0.408,0.44]	chr11	462559	9	INTRON	INTRON	IMMP1L	ENSG00000148950.11	ENST00000532287.6:ENST00000534812.5:ENST00000526776.5:ENST00000531331.1:ENST00000278200.5:ENST00000648582.1:ENST00000533642.1:ENST00000527184.5:ENST00000528161.5:ENST00000532624.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	56	2	1.74108	2.526825	3.31257	0.0424099	0.00198621	0.148082	0.0411469
chr2	216116237	216116337	1014412	0	+	0.33	(0.32,0.35]	chr2	107944	2	SS3_PROX	SS3_PROX:INTRON	XRCC5	ENSG00000079246.16	ENST00000392133.7:ENST00000429133.5:ENST00000476360.1:ENST00000392132.7:ENST00000417391.1:ENST00000451695.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	54	2	2.01768	2.5268249999999997	3.03597	0.0361337	0.00832487	0.152563	0.0774402
chr19	11152930	11153029	7136950	0	-	0.585859	(0.57,1]	chr19	719808	32	INTRON	INTRON	SPC24	ENSG00000161888.12	ENST00000585567.5:ENST00000592540.6:ENST00000591396.5:ENST00000592967.5:ENST00000423327.2:ENST00000586708.1:ENST00000585486.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	25	2	2.02391	2.52679	3.02967	0.0339274	0.00471306	0.134508	0.0631419
chr1	207330014	207330113	303352	0	+	0.333333	(0.32,0.35]	chr1	34907	26	INTRON	INTRON	CD55	ENSG00000196352.18	ENST00000695822.1:ENST00000695823.1:ENST00000695826.1:ENST00000695825.1:ENST00000695824.1:ENST00000367063.6:ENST00000695827.1:ENST00000695828.1:ENST00000645323.1:ENST00000391921.9:ENST00000695829.1:ENST00000367064.9:ENST00000314754.12:ENST00000644836.1:ENST00000343420.6:ENST00000476590.1:ENST00000465534.5:ENST00000488171.6:ENST00000618707.2:ENST00000635614.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	72	2	2.2664	2.5267299999999997	2.78706	0.0199969	0.00253645	0.109608	0.0465056
chr20	63876573	63876672	7300801	0	+	0.424242	(0.408,0.44]	chr20	743108	3	INTRON	INTRON	TPD52L2	ENSG00000101150.18	ENST00000611972.4:ENST00000615907.4:ENST00000369927.8:ENST00000346249.9:ENST00000348257.9:ENST00000352482.8:ENST00000351424.8:ENST00000217121.9:ENST00000358548.4	protein_coding	protein_coding	protein_coding	protein_coding	3	46	2	2.33431	2.52671	2.71911	0.0189489	0.0129219	0.108861	0.0990564
chr3	168085551	168085651	1854836	0	-	0.43	(0.408,0.44]	chr3	186419	368	INTRON	INTRON	GOLIM4	ENSG00000173905.9	ENST00000470487.6:ENST00000309027.4	protein_coding	protein_coding	protein_coding	protein_coding	3	46	2	2.33431	2.52671	2.71911	0.0189489	0.0129219	0.108861	0.0990564
chr9	72134486	72134586	4141113	0	+	0.49	(0.476,0.515]	chr9	377405	193	INTRON	INTRON	GDA	ENSG00000119125.17	ENST00000545168.5	protein_coding	protein_coding	protein_coding	protein_coding	4	59	2	2.24612	2.5267049999999998	2.80729	0.0126008	0.00799949	0.0980703	0.0766625
chr16	22442830	22442930	6321995	0	+	0.47	(0.44,0.476]	chr16	605299	47	INTRON	INTRON	SMG1P1	ENSG00000237296.10	ENST00000446662.5:ENST00000381231.5:ENST00000309865.11:ENST00000691795.1:ENST00000308347.10:ENST00000687936.1:ENST00000691423.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	7	102	2	2.41757	2.526685	2.6358	0.00417342	5.12141e-4	0.057064	0.0203407
chr17	78109577	78109676	6844283	0	-	0.575758	(0.57,1]	chr17	677097	23	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TMC6	ENSG00000141524.18	ENST00000590602.6:ENST00000589217.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	25	2	2.13445	2.52667	2.91889	0.0241482	0.00719009	0.12011	0.0756118
chr6	13646119	13646218	3058564	0	-	0.575758	(0.57,1]	chr6	284524	10	INTRON	INTRON	RANBP9	ENSG00000010017.13	ENST00000011619.6	protein_coding	protein_coding	protein_coding	protein_coding	3	25	2	2.13445	2.52667	2.91889	0.0241482	0.00719009	0.12011	0.0756118
chr20	17961424	17961519	7320495	0	-	0.368421	(0.35,0.378]	chr20	745331	4	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	SNX5	ENSG00000089006.17	ENST00000377768.7:ENST00000490175.5:ENST00000483485.5:ENST00000377759.9:ENST00000431277.5:ENST00000419004.2:ENST00000474883.5:ENST00000475716.5:ENST00000469704.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	61	2	1.83633	2.52655	3.21677	0.0335602	0.00313804	0.134145	0.0514466
chr1	39859215	39859315	428028	0	-	0.39	(0.378,0.408]	chr1	52020	14	INTRON	INTRON	TRIT1	ENSG00000043514.17	ENST00000316891.10:ENST00000648678.1:ENST00000537440.5:ENST00000372818.5:ENST00000462797.5:ENST00000441669.6:ENST00000495175.6:ENST00000491865.5:ENST00000541099.5:ENST00000492612.6:ENST00000489945.5:ENST00000486825.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	93	2	2.48281	2.526515	2.57022	0.00340454	0.00179058	0.0517761	0.0392749
chr6	17608194	17608266	2826699	0	+	0.388889	(0.378,0.408]	chr6	265437	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	FAM8A1	ENSG00000137414.7	ENST00000259963.4:ENST00000688732.1:ENST00000690940.1:ENST00000691422.1:ENST00000685064.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	83	2	1.99801	2.526515	3.05502	0.00689519	0.00408225	0.0717484	0.0581373
chr7	50319700	50319799	3316852	0	+	0.474747	(0.44,0.476]	chr7	308256	2	INTRON	INTRON	IKZF1	ENSG00000185811.20	ENST00000642219.1:ENST00000645066.1:ENST00000484847.6:ENST00000646110.1:ENST00000331340.8:ENST00000413698.5:ENST00000349824.8:ENST00000343574.9:ENST00000357364.8:ENST00000440768.6:ENST00000346667.8:ENST00000615491.4:ENST00000359197.9:ENST00000439701.2:ENST00000438033.5:ENST00000492782.6:ENST00000462201.1:ENST00000641948.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	46	2	2.44514	2.52644	2.60774	0.0255874	0.0087381	0.120269	0.0845538
chr7	157383274	157383373	3455780	0	+	0.454545	(0.44,0.476]	chr7	323107	5	INTRON	INTRON	DNAJB6	ENSG00000105993.15	ENST00000429029.6:ENST00000262177.9:ENST00000417758.5:ENST00000459889.5:ENST00000443280.5:ENST00000634080.1:ENST00000468928.5:ENST00000465908.5:ENST00000487480.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	46	2	2.44514	2.52644	2.60774	0.0255874	0.0087381	0.120269	0.0845538
chr1	32833335	32833434	66724	0	+	0.393939	(0.378,0.408]	chr1	8559	29	INTRON	INTRON	S100PBP	ENSG00000116497.18	ENST00000373476.5:ENST00000531123.5:ENST00000356689.7:ENST00000373475.10	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	64	2	2.30628	2.52637	2.74646	0.0163339	0.00271684	0.101571	0.0481064
chr1	61143327	61143427	128005	0	+	0.4	(0.378,0.408]	chr1	14778	104	INTRON	INTRON	NFIA	ENSG00000162599.17	ENST00000371191.5:ENST00000664495.1:ENST00000476646.5:ENST00000407417.7:ENST00000479364.1:ENST00000371189.8:ENST00000670151.1:ENST00000664149.1:ENST00000662015.1:ENST00000403491.8:ENST00000371187.7:ENST00000485903.6:ENST00000371185.6:ENST00000371184.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	64	2	2.30628	2.52637	2.74646	0.0163339	0.00271684	0.101571	0.0481064
chr4	32009215	32009314	1941540	0	+	0.30303	(0.28,0.32]	chr4	194727	110	INTRON	INTRON	LINC02506	ENSG00000251129.3	ENST00000662669.1:ENST00000665582.2:ENST00000667252.2:ENST00000660373.2:ENST00000684849.1:ENST00000513211.2:ENST00000659613.1:ENST00000657576.1:ENST00000686730.1:ENST00000685407.1:ENST00000685455.1:ENST00000655951.1	lncRNA	lncRNA	lncRNA	lncRNA	5	80	2	1.68411	2.5263299999999997	3.36855	0.0323543	0.00305882	0.145026	0.0494118
chr2	175084557	175084657	1271485	0	-	0.36	(0.35,0.378]	chr2	134392	34	INTRON	INTRON	ATF2	ENSG00000115966.18	ENST00000345739.9:ENST00000426833.7:ENST00000264110.7:ENST00000409437.5:ENST00000409635.5:ENST00000435004.6:ENST00000428760.5:ENST00000392544.5:ENST00000417080.5:ENST00000456655.5:ENST00000421438.5:ENST00000429579.5:ENST00000415955.5:ENST00000409499.5:ENST00000478905.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	122	2	2.08349	2.52621	2.96893	0.00201332	0.00149997	0.0415004	0.0351802
chr3	51497280	51497379	1697254	0	-	0.535354	(0.515,0.57]	chr3	174430	1	INTRON	INTRON	DCAF1	ENSG00000145041.16	ENST00000504652.5:ENST00000423656.5:ENST00000684031.1	protein_coding	protein_coding	protein_coding	protein_coding	3	42	2	2.48902	2.52604	2.56306	0.0247751	0.00760558	0.131869	0.0749571
chr10	74258918	74259018	4456848	0	+	0.39	(0.378,0.408]	chr10	411553	155	INTRON	INTRON	ADK	ENSG00000156110.15	ENST00000672429.1:ENST00000539909.6:ENST00000286621.7:ENST00000673352.1:ENST00000673310.1:ENST00000672920.1:ENST00000672394.1:ENST00000372734.5:ENST00000673027.1:ENST00000541550.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	37	2	2.26252	2.52599	2.78946	0.056222	0.0158859	0.18407	0.101453
chr19	9146366	9146466	7011298	0	+	0.26	[0,0.28]	chr19	696234	54	INTRON	INTRON	ZNF317	ENSG00000130803.15	ENST00000247956.11:ENST00000360385.7:ENST00000591278.5:ENST00000419608.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	49	2	2.5055	2.5258700000000003	2.54624	0.0388449	0.0359431	0.152322	0.143072
chr3	28282127	28282227	1390953	0	+	0.24	[0,0.28]	chr3	145643	184	INTRON	INTRON	CMC1	ENSG00000187118.14	ENST00000477739.1:ENST00000423894.5:ENST00000466830.6:ENST00000334841.10:ENST00000418849.2:ENST00000396610.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	49	2	2.5055	2.5258700000000003	2.54624	0.0388449	0.0359431	0.152322	0.143072
chr7	128990901	128991000	3635933	0	-	0.242424	[0,0.28]	chr7	338088	3	INTRON	INTRON	TNPO3	ENSG00000064419.14	ENST00000627585.2:ENST00000265388.10:ENST00000471234.5:ENST00000482320.5:ENST00000471166.1	protein_coding	protein_coding	protein_coding	protein_coding	2	49	2	2.5055	2.5258700000000003	2.54624	0.0388449	0.0359431	0.152322	0.143072
chr20	63886342	63886442	7300901	0	+	0.5	(0.476,0.515]	chr20	743119	3	SS5_PROX	SS5_PROX:INTRON	TPD52L2	ENSG00000101150.18	ENST00000611972.4:ENST00000615907.4:ENST00000369927.8:ENST00000346249.9:ENST00000348257.9:ENST00000352482.8:ENST00000351424.8:ENST00000217121.9:ENST00000358548.4	protein_coding	protein_coding	protein_coding	protein_coding	7	94	2	1.87544	2.52586	3.17628	0.0113658	3.6008e-4	0.0886611	0.0169207
chr16	3710184	3710284	6434403	0	-	0.43	(0.408,0.44]	chr16	619377	4	SS5_PROX	SS5_PROX:INTRON	TRAP1	ENSG00000126602.11	ENST00000246957.10:ENST00000538171.5:ENST00000571804.5:ENST00000574941.5:ENST00000576106.5:ENST00000571011.1:ENST00000570403.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	35	2	2.3975	2.52585	2.6542	0.040266	0.0227514	0.161534	0.117618
chr7	23406303	23406403	3503021	0	-	0.44	(0.408,0.44]	chr7	326892	8	INTRON	INTRON	IGF2BP3	ENSG00000136231.14	ENST00000258729.8:ENST00000421467.6:ENST00000468263.5:ENST00000479504.5:ENST00000466809.6:ENST00000491719.5:ENST00000465058.5:ENST00000469723.5:ENST00000476938.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	35	2	2.3975	2.52585	2.6542	0.040266	0.0227514	0.161534	0.117618
chr20	47251631	47251731	7348449	0	-	0.34	(0.32,0.35]	chr20	749282	18	INTRON	INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000467200.6:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000468376.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	73	2	2.45306	2.525805	2.59855	0.00916394	0.00682041	0.0855292	0.0712518
chr9	93545743	93545841	4158996	0	+	0.357143	(0.35,0.378]	chr9	379186	19	INTRON	INTRON	FAM120A	ENSG00000048828.17	ENST00000277165.11:ENST00000427765.1	protein_coding	protein_coding	protein_coding	protein_coding	5	69	2	1.64283	2.52567	3.40851	0.034896	0.00205747	0.148998	0.0409869
chr10	28537915	28537949	4413851	0	+	0.382353	(0.378,0.408]	chr10	407144	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	WAC	ENSG00000095787.24	ENST00000680735.1:ENST00000375664.8:ENST00000428935.6:ENST00000651598.1:ENST00000628285.3:ENST00000681112.1:ENST00000679570.1:ENST00000375646.5:ENST00000354911.9:ENST00000347934.8:ENST00000420266.6:ENST00000651885.1:ENST00000651441.1:ENST00000679398.1:ENST00000424454.5:ENST00000442148.6:ENST00000448193.5:ENST00000414108.6:ENST00000679428.1:ENST00000439676.5:ENST00000345541.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	48	2	1.8252	2.525595	3.22599	0.0619563	0.00288652	0.174514	0.0494641
chr14	73275400	73275498	5917454	0	-	0.408163	(0.378,0.408]	chr14	562180	4	UTR3	UTR3:EXON_MRNA	NUMB	ENSG00000133961.21	ENST00000554546.5:ENST00000535282.5:ENST00000359560.7:ENST00000355058.7:ENST00000544991.7:ENST00000555238.6:ENST00000557597.5:ENST00000356296.8:ENST00000556772.5	protein_coding	protein_coding	protein_coding	protein_coding	3	48	2	1.8252	2.525595	3.22599	0.0619563	0.00288652	0.174514	0.0494641
chr14	102692705	102692805	5823535	0	+	0.38	(0.378,0.408]	chr14	552496	104	INTRON	INTRON	RCOR1	ENSG00000089902.10	ENST00000262241.7	protein_coding	protein_coding	protein_coding	protein_coding	3	48	2	1.8252	2.525595	3.22599	0.0619563	0.00288652	0.174514	0.0494641
chr2	159712018	159712115	1252954	0	-	0.402062	(0.378,0.408]	chr2	132761	1	SS5_PROX	SS5_PROX:INTRON	ENSG00000226266	ENSG00000226266.7	ENST00000453016.5:ENST00000607836.1:ENST00000693353.1	lncRNA	lncRNA	lncRNA	lncRNA	3	48	2	1.8252	2.525595	3.22599	0.0619563	0.00288652	0.174514	0.0494641
chr11	86011136	86011236	5014253	0	-	0.28	[0,0.28]	chr11	472980	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000630913.2:ENST00000528398.5:ENST00000356360.9:ENST00000534412.5:ENST00000531771.5:ENST00000531558.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	151	2	2.31936	2.5255549999999998	2.73175	0.00962163	5.82315e-4	0.0823918	0.0219289
chr16	71923880	71923935	6386908	0	+	0.4	(0.378,0.408]	chr16	614130	1	SS3_PROX	SS3_PROX:SS5_PROX:INTRON	IST1	ENSG00000182149.21	ENST00000544564.5:ENST00000541571.6:ENST00000535424.5:ENST00000606369.5:ENST00000378799.11:ENST00000538565.5:ENST00000329908.12:ENST00000538850.5:ENST00000378798.9:ENST00000439924.6:ENST00000456820.2:ENST00000536027.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	90	2	2.47752	2.5255150000000004	2.57351	0.0092831	7.32287e-4	0.0817766	0.0246502
chr1	52863000	52863096	105112	0	+	0.28125	(0.28,0.32]	chr1	13740	18	INTRON	INTRON	ZYG11A	ENSG00000203995.10	ENST00000371532.5:ENST00000612017.4:ENST00000371528.2	protein_coding	protein_coding	protein_coding	protein_coding	2	43	2	2.18975	2.52544	2.86113	0.0776042	0.0122675	0.196285	0.0969406
chr11	46034074	46034174	4944362	0	-	0.31	(0.28,0.32]	chr11	463333	71	INTRON	INTRON	PHF21A	ENSG00000135365.17	ENST00000676320.1:ENST00000323180.10:ENST00000530587.6:ENST00000693049.1:ENST00000690620.1:ENST00000418153.6:ENST00000525676.6:ENST00000689695.1:ENST00000685188.1:ENST00000532883.5:ENST00000524497.5:ENST00000531959.5:ENST00000687985.1:ENST00000693122.1:ENST00000529734.5:ENST00000529782.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	43	2	2.18975	2.52544	2.86113	0.0776042	0.0122675	0.196285	0.0969406
chr4	144013053	144013153	2251687	0	-	0.31	(0.28,0.32]	chr4	219991	3	SS3_PROX	SS3_PROX:INTRON	GYPB	ENSG00000250361.9	ENST00000502664.6:ENST00000506679.5:ENST00000429670.3:ENST00000507009.5:ENST00000513128.5:ENST00000505583.5:ENST00000506516.6:ENST00000513557.5:ENST00000513677.5:ENST00000511198.5:ENST00000504951.6:ENST00000510196.6:ENST00000503255.5:ENST00000638448.1:ENST00000508618.5:ENST00000508841.1:ENST00000642935.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	43	2	2.18975	2.52544	2.86113	0.0776042	0.0122675	0.196285	0.0969406
chr5	131479112	131479212	2717589	0	-	0.3	(0.28,0.32]	chr5	255518	2	SS5_PROX	SS5_PROX:INTRON	RAPGEF6	ENSG00000158987.22	ENST00000509018.6:ENST00000671916.1:ENST00000507093.5:ENST00000296859.10:ENST00000627212.2:ENST00000512052.5:ENST00000308008.10:ENST00000515170.5:ENST00000510071.5:ENST00000514179.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	43	2	2.18975	2.52544	2.86113	0.0776042	0.0122675	0.196285	0.0969406
chr5	151789063	151789163	2521972	0	+	0.3	(0.28,0.32]	chr5	241305	2	SS3_PROX	SS3_PROX:INTRON	G3BP1	ENSG00000145907.16	ENST00000523519.5:ENST00000520578.6:ENST00000678070.1:ENST00000678964.1:ENST00000678925.1:ENST00000394123.7:ENST00000676978.1:ENST00000679289.1:ENST00000677493.1:ENST00000676644.1:ENST00000677757.1:ENST00000522761.6:ENST00000677909.1:ENST00000676827.1:ENST00000520177.6:ENST00000676634.1:ENST00000678854.1:ENST00000677602.1:ENST00000519832.1:ENST00000676911.1:ENST00000356245.8:ENST00000678646.1:ENST00000677381.1:ENST00000678904.1:ENST00000678910.1:ENST00000678101.1:ENST00000677105.1:ENST00000676813.1:ENST00000522367.6:ENST00000517947.5:ENST00000507878.7:ENST00000678369.1:ENST00000677433.1:ENST00000678564.1:ENST00000677252.1:ENST00000677923.1:ENST00000677323.1:ENST00000522666.1:ENST00000679057.1:ENST00000677146.1:ENST00000677126.1:ENST00000678027.1:ENST00000678209.1:ENST00000678153.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	43	2	2.18975	2.52544	2.86113	0.0776042	0.0122675	0.196285	0.0969406
chr10	74033516	74033616	4454856	0	+	0.41	(0.408,0.44]	chr10	411391	163	INTRON	INTRON	VCL	ENSG00000035403.18	ENST00000623461.3:ENST00000372755.7:ENST00000624354.3:ENST00000211998.10:ENST00000478896.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	62	2	2.26792	2.525405	2.78289	0.0179973	0.0022785	0.106756	0.0437013
chr12	50987060	50987157	5324365	0	-	0.484536	(0.476,0.515]	chr12	507639	12	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	SLC11A2	ENSG00000110911.17	ENST00000551215.5:ENST00000547688.7:ENST00000644495.1:ENST00000643884.1:ENST00000546636.5:ENST00000547198.5:ENST00000646264.1:ENST00000394904.9:ENST00000262052.9:ENST00000550782.5:ENST00000643123.1:ENST00000646740.1:ENST00000642227.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	84	2	2.2792	2.5253550000000002	2.77151	0.00299196	0.00288481	0.0503888	0.0475859
chr1	6190757	6190855	366110	0	-	0.397959	(0.378,0.408]	chr1	43018	36	INTRON	INTRON	RPL22	ENSG00000116251.11	ENST00000234875.9:ENST00000480661.1:ENST00000497965.5:ENST00000471204.5:ENST00000465387.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	48	2	2.05897	2.525335	2.9917	0.0339294	0.0068789	0.134508	0.0749442
chr5	36901878	36901978	2338681	0	+	0.39	(0.378,0.408]	chr5	225949	155	INTRON	INTRON	NIPBL	ENSG00000164190.19	ENST00000282516.13:ENST00000448238.2:ENST00000652901.1	protein_coding	protein_coding	protein_coding	protein_coding	3	48	2	2.05897	2.525335	2.9917	0.0339294	0.0068789	0.134508	0.0749442
chr7	73004887	73004981	3554172	0	-	0.574468	(0.57,1]	chr7	330671	8	INTRON	INTRON	STAG3L3	ENSG00000174353.17	ENST00000436857.5:ENST00000428423.5:ENST00000448173.5:ENST00000423834.6:ENST00000569650.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	6	38	2	1.64729	2.52531	3.40333	0.0231375	9.20604e-4	0.118148	0.0278392
chr3	42626699	42626799	1406239	0	+	0.23	[0,0.28]	chr3	147676	1	SS3_PROX	SS3_PROX:INTRON	NKTR	ENSG00000114857.19	ENST00000468735.6:ENST00000487466.5:ENST00000429888.5:ENST00000232978.13:ENST00000478488.1:ENST00000465584.5:ENST00000466553.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	20	310	2	1.83099	2.5252299999999996	3.21947	0.00237989	2.95491e-4	0.0449397	0.0159632
chr1	32328274	32328372	65086	0	+	0.428571	(0.408,0.44]	chr1	8345	2	INTRON	INTRON	HDAC1	ENSG00000116478.12	ENST00000373548.8:ENST00000428704.1:ENST00000490081.5:ENST00000482310.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	29	387	2	2.27924	2.5251799999999998	2.77112	5.49706e-5	2.39889e-5	0.00608932	0.00402226
chr10	45859389	45859489	4607523	0	-	0.29	(0.28,0.32]	chr10	424439	41	INTRON	INTRON	PARGP1	ENSG00000239883.9	ENST00000440803.7:ENST00000610690.1	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript	2	43	2	2.51488	2.52505	2.53522	0.0380957	0.0310424	0.143457	0.141678
chr15	92992159	92992259	6104652	0	+	0.47	(0.44,0.476]	chr15	581571	4	SS5_PROX	SS5_PROX:INTRON	CHD2	ENSG00000173575.22	ENST00000626874.2:ENST00000394196.9:ENST00000635856.1:ENST00000637572.1:ENST00000636881.1:ENST00000636306.1:ENST00000637789.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	56	2	1.49942	2.52505	3.55068	0.0792118	7.06861e-4	0.199574	0.0241881
chr16	18035027	18035127	6452983	0	-	0.3	(0.28,0.32]	chr16	621960	312	INTRON	INTRON	ENSG00000259929:ENSG00000260242	ENSG00000259929.5:ENSG00000260242.1	ENST00000567304.1:ENST00000563866.1	lncRNA	lncRNA	lncRNA	lncRNA	2	43	2	2.51488	2.52505	2.53522	0.0380957	0.0310424	0.143457	0.141678
chr2	119772518	119772618	856121	0	+	0.39	(0.378,0.408]	chr2	96170	5	INTRON	INTRON	PTPN4	ENSG00000088179.9	ENST00000263708.7:ENST00000460162.1:ENST00000420482.5:ENST00000460289.5:ENST00000488279.6:ENST00000485247.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	48	2	2.51464	2.524835	2.53503	0.0319942	0.00684341	0.13174	0.0748032
chrX	119595330	119595429	7873007	0	-	0.40404	(0.378,0.408]	chrX	801774	23	INTRON	INTRON	NKRF	ENSG00000186416.18	ENST00000304449.8:ENST00000542113.3:ENST00000688521.1	protein_coding	protein_coding	protein_coding	protein_coding	3	48	2	2.51464	2.524835	2.53503	0.0319942	0.00684341	0.13174	0.0748032
chr15	64467230	64467330	6044154	0	+	0.35	(0.32,0.35]	chr15	575688	60	INTRON	INTRON	ZNF609	ENSG00000180357.10	ENST00000326648.5:ENST00000416172.1	protein_coding	protein_coding	protein_coding	protein_coding	7	111	2	1.61334	2.5248150000000003	3.43629	0.0322135	1.14798e-4	0.132553	0.00917224
chr15	55261516	55261615	6180620	0	-	0.464646	(0.44,0.476]	chr15	589160	11	INTRON	INTRON	RAB27A	ENSG00000069974.16	ENST00000336787.6:ENST00000396307.6:ENST00000564609.5:ENST00000569493.5:ENST00000567380.5:ENST00000565972.5:ENST00000563262.5:ENST00000568803.1:ENST00000567639.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	46	2	1.9039	2.524745	3.14559	0.0501498	0.00384923	0.156383	0.0562562
chr17	57267454	57267553	6632856	0	+	0.636364	(0.57,1]	chr17	648000	40	EXON_MRNA	EXON_MRNA:INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000581776.5:ENST00000581523.5:ENST00000674961.1:ENST00000582453.5:ENST00000675656.1:ENST00000322684.7:ENST00000579590.5:ENST00000579531.5:ENST00000676073.1:ENST00000579483.1:ENST00000675822.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	42	2	1.79063	2.52473	3.25883	0.0356001	1.51392e-4	0.15159	0.0112689
chr3	185684766	185684865	1884938	0	-	0.434343	(0.408,0.44]	chr3	188536	85	INTRON	INTRON	IGF2BP2	ENSG00000073792.16	ENST00000382199.7:ENST00000346192.7:ENST00000457616.6:ENST00000421047.3:ENST00000494906.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	103	2	2.32619	2.52471	2.72323	0.00239266	0.00114246	0.0450826	0.0307966
chr1	58675880	58675980	467584	0	-	0.36	(0.35,0.378]	chr1	56452	3	SS3_PROX	SS3_PROX:INTRON	MYSM1	ENSG00000162601.11	ENST00000655340.1:ENST00000493821.6:ENST00000472487.6:ENST00000665648.1:ENST00000659812.1:ENST00000659108.1:ENST00000401044.7:ENST00000660611.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	37	2	2.32443	2.524705	2.72498	0.0544216	0.0168499	0.164972	0.11068
chr15	30628923	30629022	5992292	0	+	0.373737	(0.35,0.378]	chr15	569689	16	INTRON	INTRON	ENSG00000284906:ARHGAP11B	ENSG00000284906.3:ENSG00000285077.3	ENST00000564902.5:ENST00000646747.1:ENST00000689358.1:ENST00000428041.4:ENST00000693711.1:ENST00000685924.1:ENST00000563110.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	37	2	2.32443	2.524705	2.72498	0.0544216	0.0168499	0.164972	0.11068
chr9	124951106	124951206	4350035	0	-	0.36	(0.35,0.378]	chr9	399421	86	UTR3	UTR3:EXON_MRNA	SCAI	ENSG00000173611.18	ENST00000336505.11	protein_coding	protein_coding	protein_coding	protein_coding	2	37	2	2.32443	2.524705	2.72498	0.0544216	0.0168499	0.164972	0.11068
chr19	11146430	11146517	7136875	0	-	0.425287	(0.408,0.44]	chr19	719785	1	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	SPC24	ENSG00000161888.12	ENST00000585567.5:ENST00000592540.6:ENST00000591396.5:ENST00000592967.5	protein_coding	protein_coding	protein_coding	protein_coding	27	362	2	2.06318	2.52469	2.9862	4.85682e-4	2.91626e-6	0.0203841	0.00109445
chr7	2365816	2365916	3269739	0	+	0.51	(0.476,0.515]	chr7	303826	1	SS3_PROX	SS3_PROX:INTRON	EIF3B	ENSG00000106263.19	ENST00000431643.5:ENST00000360876.9:ENST00000397011.2:ENST00000463229.2:ENST00000468250.2:ENST00000463026.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	55	2	2.16306	2.52468	2.8863	0.0111679	0.00973468	0.0877435	0.0877284
chrX	123984782	123984882	7716983	0	+	0.49	(0.476,0.515]	chrX	789462	210	INTRON	INTRON	STAG2	ENSG00000101972.20	ENST00000394477.5:ENST00000218089.13:ENST00000455404.5:ENST00000483575.5:ENST00000687810.1:ENST00000687071.1:ENST00000469481.1:ENST00000458700.5:ENST00000371160.5:ENST00000435103.5:ENST00000687852.1:ENST00000371145.8:ENST00000692982.1:ENST00000371157.7:ENST00000691035.1:ENST00000686802.1:ENST00000691383.1:ENST00000686127.1:ENST00000371144.7:ENST00000458176.5:ENST00000466748.5:ENST00000471107.1:ENST00000428941.5:ENST00000435215.5:ENST00000394478.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	55	2	2.16306	2.52468	2.8863	0.0111679	0.00973468	0.0877435	0.0877284
chr1	223962872	223962971	643501	0	-	0.474747	(0.44,0.476]	chr1	75994	2	INTRON	INTRON	GTF2IP20	ENSG00000272645.4	ENST00000634905.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	5	66	2	1.90375	2.52467	3.14559	0.0156406	0.00384923	0.101393	0.0562562
chr1	219196445	219196545	318605	0	+	0.35	(0.32,0.35]	chr1	36457	28	INTRON	INTRON	LYPLAL1	ENSG00000143353.12	ENST00000460522.5:ENST00000366927.3:ENST00000366928.10:ENST00000477938.5:ENST00000463964.5:ENST00000483635.5:ENST00000474379.5:ENST00000469590.5:ENST00000478794.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	145	2	2.35316	2.524635	2.69611	0.00166606	8.28744e-4	0.0369207	0.0263691
chr1	47297136	47297235	445935	0	-	0.474747	(0.44,0.476]	chr1	54045	9	INTRON	INTRON	STIL	ENSG00000123473.17	ENST00000360380.7:ENST00000371877.8:ENST00000337817.10:ENST00000682977.1:ENST00000396221.6:ENST00000447475.7:ENST00000436811.2:ENST00000682165.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	46	2	2.02558	2.52462	3.02366	0.0363567	0.00603307	0.138959	0.0700813
chr14	105227043	105227137	5973605	0	-	0.446809	(0.44,0.476]	chr14	568006	4	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	BRF1	ENSG00000185024.18	ENST00000547530.7:ENST00000379937.6:ENST00000392557.8:ENST00000446501.6:ENST00000551787.5:ENST00000619151.4:ENST00000327359.7:ENST00000440513.7:ENST00000547562.5:ENST00000549655.5:ENST00000552127.5:ENST00000546417.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	46	2	2.02558	2.52462	3.02366	0.0363567	0.00603307	0.138959	0.0700813
chr20	4012247	4012347	7309375	0	-	0.46	(0.44,0.476]	chr20	744300	375	INTRON	INTRON	RNF24	ENSG00000101236.17	ENST00000336095.10:ENST00000358395.11:ENST00000545616.2	protein_coding	protein_coding	protein_coding	protein_coding	3	46	2	2.02558	2.52462	3.02366	0.0363567	0.00603307	0.138959	0.0700813
chr6	27838339	27838375	3072815	0	-	0.361111	(0.35,0.378]	chr6	285658	1	UTR5	UTR5:EXON_MRNA	H2AC15	ENSG00000275221.2	ENST00000618958.2	protein_coding	protein_coding	protein_coding	protein_coding	2	37	2	2.39939	2.5245949999999997	2.6498	0.0458078	0.0210137	0.149888	0.122348
chr4	15605338	15605434	2114352	0	-	0.322917	(0.32,0.35]	chr4	208813	11	UTR3	UTR3:EXON_MRNA	FBXL5	ENSG00000118564.15	ENST00000341285.8:ENST00000412094.6:ENST00000511441.5:ENST00000513163.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	53	2	2.30476	2.5244549999999997	2.74415	0.0198267	0.0151817	0.109608	0.108535
chr8	15760434	15760533	3706356	0	+	0.343434	(0.32,0.35]	chr8	343623	22	INTRON	INTRON	TUSC3	ENSG00000104723.21	ENST00000382020.8:ENST00000515859.5:ENST00000506802.5:ENST00000503731.6:ENST00000510836.5:ENST00000508446.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	53	2	2.30476	2.5244549999999997	2.74415	0.0198267	0.0151817	0.109608	0.108535
chr9	131420608	131420707	4217235	0	+	0.515152	(0.476,0.515]	chr9	386720	260	INTRON	INTRON	PRRC2B	ENSG00000288701.1	ENST00000682525.1:ENST00000684596.1:ENST00000683519.1:ENST00000682501.1	protein_coding	protein_coding	protein_coding	protein_coding	7	101	2	2.50488	2.5244150000000003	2.54395	0.00285353	8.361e-4	0.0474836	0.0263691
chr3	8878268	8878368	1609789	0	-	0.33	(0.32,0.35]	chr3	166131	13	UTR3	UTR3:EXON_MRNA:INTRON	RAD18	ENSG00000070950.10	ENST00000427329.5:ENST00000264926.7	protein_coding	protein_coding	protein_coding	protein_coding	3	53	2	2.25173	2.5244	2.79707	0.0180122	0.0170923	0.114436	0.104099
chr18	802228	802328	6940606	0	-	0.41	(0.408,0.44]	chr18	686527	42	INTRON	INTRON	YES1	ENSG00000176105.14	ENST00000584307.5:ENST00000314574.5:ENST00000577611.1:ENST00000581960.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	167	2	2.17687	2.524385	2.8719	0.00120932	1.3686e-4	0.0317954	0.0100759
chr5	34184448	34184546	2599929	0	-	0.591837	(0.57,1]	chr5	247053	12	INTRON	INTRON	GUSBP18	ENSG00000215158.9	ENST00000514048.5:ENST00000507274.1:ENST00000508395.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	14	98	2	2.35315	2.5239399999999996	2.69473	1.10951e-4	1.05085e-4	0.00920724	0.00895084
chr9	131174618	131174718	4216133	0	+	0.53	(0.515,0.57]	chr9	386618	3	SS5_PROX	SS5_PROX:INTRON	NUP214	ENSG00000126883.19	ENST00000695497.1:ENST00000695498.1:ENST00000695496.1:ENST00000695495.1:ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000525980.5:ENST00000526346.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	114	2	1.88214	2.52383	3.16552	0.00447641	8.25408e-5	0.0610799	0.00812487
chr2	39110539	39110639	1102233	0	-	0.27	[0,0.28]	chr2	118304	122	INTRON	INTRON	SOS1	ENSG00000115904.15	ENST00000692089.1:ENST00000402219.8:ENST00000690876.1:ENST00000395038.6:ENST00000691229.1:ENST00000689668.1:ENST00000690679.1:ENST00000461545.2:ENST00000451331.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	110	2	2.30641	2.5238	2.74119	0.0213596	0.00126858	0.113755	0.0330485
chr17	75153382	75153477	6836080	0	-	0.610526	(0.57,1]	chr17	675492	6	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	JPT1	ENSG00000189159.16	ENST00000409753.8:ENST00000476258.5:ENST00000304834.11:ENST00000356033.8:ENST00000470924.5:ENST00000481647.5:ENST00000580380.1:ENST00000581874.1:ENST00000584079.5:ENST00000465454.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	25	2	2.05026	2.523775	2.99729	0.0321326	0.00538023	0.145026	0.0642754
chr19	3411678	3411777	7000078	0	+	0.575758	(0.57,1]	chr19	694177	1	INTRON	INTRON	NFIC	ENSG00000141905.19	ENST00000641145.1:ENST00000589123.5:ENST00000395111.7:ENST00000586919.5:ENST00000341919.7:ENST00000443272.3:ENST00000590282.5:ENST00000588839.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	25	2	2.05026	2.523775	2.99729	0.0321326	0.00538023	0.145026	0.0642754
chr2	238448391	238448489	1052784	0	+	0.571429	(0.57,1]	chr2	112004	20	UTR3	UTR3:EXON_MRNA:INTRON	ASB1	ENSG00000065802.12	ENST00000264607.9:ENST00000481566.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	25	2	2.05026	2.523775	2.99729	0.0321326	0.00538023	0.145026	0.0642754
chr22	20942625	20942725	7480770	0	+	0.52	(0.515,0.57]	chr22	763096	80	INTRON	INTRON	CRKL	ENSG00000099942.13	ENST00000354336.8:ENST00000411769.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	55	2	1.37301	2.52377	3.67453	0.0752392	3.27949e-4	0.193891	0.0160995
chr19	17234603	17234702	7151119	0	-	0.525253	(0.515,0.57]	chr19	722556	16	INTRON	INTRON	NR2F6	ENSG00000160113.6	ENST00000291442.4	protein_coding	protein_coding	protein_coding	protein_coding	5	54	2	1.84511	2.523755	3.2024	0.0167182	0.00322022	0.110511	0.0507087
chr8	47868851	47868950	3944804	0	-	0.535354	(0.515,0.57]	chr8	361767	37	INTRON	INTRON	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7	protein_coding	protein_coding	protein_coding	protein_coding	3	43	2	2.46104	2.5236400000000003	2.58624	0.032841	0.00526399	0.145164	0.0633874
chr12	98733258	98733356	5200038	0	+	0.510204	(0.476,0.515]	chr12	492034	8	UTR3	UTR3:EXON_MRNA	APAF1	ENSG00000120868.14	ENST00000551964.6:ENST00000359972.6:ENST00000333991.5:ENST00000357310.5:ENST00000550527.5	protein_coding	protein_coding	protein_coding	protein_coding	2	35	2	2.28264	2.52362	2.7646	0.0534132	0.0162075	0.179876	0.101453
chr16	85549668	85549768	6415327	0	+	0.5	(0.476,0.515]	chr16	615465	1904	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	2	35	2	2.28264	2.52362	2.7646	0.0534132	0.0162075	0.179876	0.101453
chr5	145681104	145681204	2745092	0	-	0.49	(0.476,0.515]	chr5	258670	2074	INTRON	INTRON	PRELID2	ENSG00000186314.12	ENST00000510259.5	protein_coding	processed_transcript	protein_coding	processed_transcript	2	35	2	2.28264	2.52362	2.7646	0.0534132	0.0162075	0.179876	0.101453
chr1	747318	747417	357440	0	-	0.373737	(0.35,0.378]	chr1	41168	1	INTRON	INTRON	ENSG00000230021:ENSG00000228327	ENSG00000230021.10:ENSG00000228327.4	ENST00000634337.2:ENST00000635509.2:ENST00000506640.2	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene:transcribed_unprocessed_pseudogene	processed_transcript	5	81	2	1.99351	2.52359	3.05367	0.020841	7.17897e-4	0.111648	0.0244389
chr5	138015222	138015321	2730621	0	-	0.373737	(0.35,0.378]	chr5	256991	29	INTRON	INTRON	FAM13B	ENSG00000031003.11	ENST00000689681.1:ENST00000033079.7:ENST00000425075.6:ENST00000420893.6:ENST00000514310.5	protein_coding	protein_coding	protein_coding	protein_coding	5	81	2	1.99351	2.52359	3.05367	0.020841	7.17897e-4	0.111648	0.0244389
chr3	47829726	47829818	1420245	0	+	0.380435	(0.378,0.408]	chr3	149234	2	INTRON	INTRON	DHX30	ENSG00000132153.15	ENST00000395745.6:ENST00000445061.6:ENST00000441384.5:ENST00000348968.8:ENST00000446256.6:ENST00000619982.4:ENST00000457607.1:ENST00000470959.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	49	2	2.26009	2.52357	2.78705	0.0188651	0.0135539	0.108861	0.101363
chr19	5703299	5703398	7124535	0	-	0.626263	(0.57,1]	chr19	717125	20	INTRON	INTRON	LONP1	ENSG00000196365.12	ENST00000360614.8:ENST00000587552.5:ENST00000540670.6:ENST00000593119.5:ENST00000585374.5:ENST00000590558.5:ENST00000590729.5:ENST00000590206.1:ENST00000588589.5:ENST00000587365.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	33	2	2.38391	2.52348	2.66305	0.0104374	0.00327879	0.0902296	0.0509077
chr4	2647032	2647132	1913630	0	+	0.63	(0.57,1]	chr4	192016	2	SS5_PROX	SS5_PROX:INTRON	FAM193A	ENSG00000125386.16	ENST00000637812.2:ENST00000324666.9:ENST00000382839.7:ENST00000512465.5:ENST00000545951.5:ENST00000502458.5:ENST00000513898.5:ENST00000505311.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	33	2	2.38391	2.52348	2.66305	0.0104374	0.00327879	0.0902296	0.0509077
chr6	85636866	85636966	3151386	0	-	0.33	(0.32,0.35]	chr6	293891	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ENSG00000271793:SYNCRIP	ENSG00000271793.2:ENSG00000135316.19	ENST00000682083.1:ENST00000683074.1:ENST00000681965.1:ENST00000682504.1:ENST00000682106.1:ENST00000683364.1:ENST00000683436.1:ENST00000684220.1:ENST00000683909.1:ENST00000684462.1:ENST00000616122.5:ENST00000678528.1:ENST00000676637.1:ENST00000677771.1:ENST00000355238.11:ENST00000678878.1:ENST00000677481.1:ENST00000677646.1:ENST00000676630.1:ENST00000678618.1:ENST00000676542.1:ENST00000677059.1:ENST00000444272.2:ENST00000678899.1:ENST00000369622.8:ENST00000678355.1:ENST00000676688.1:ENST00000677514.1:ENST00000678816.1:ENST00000678930.1:ENST00000678589.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	90	2	1.91414	2.523455	3.13277	0.011737	0.00458313	0.0894475	0.0622676
chr10	35136785	35136884	4422803	0	+	0.40404	(0.378,0.408]	chr10	407755	89	INTRON	INTRON	CREM	ENSG00000095794.20	ENST00000474362.5:ENST00000374721.7:ENST00000496626.5:ENST00000685392.1:ENST00000482646.5:ENST00000489388.5:ENST00000374726.7:ENST00000461968.5:ENST00000490460.5:ENST00000466251.5:ENST00000482633.5:ENST00000495960.5:ENST00000686585.1:ENST00000429130.7:ENST00000469949.6:ENST00000460270.5:ENST00000496019.5:ENST00000354759.7:ENST00000489321.5:ENST00000374728.7:ENST00000427847.6:ENST00000345491.7:ENST00000487132.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	49	2	2.38873	2.52344	2.65815	0.0458857	0.00391167	0.149888	0.0569957
chr1	20768754	20768853	389675	0	-	0.454545	(0.44,0.476]	chr1	46549	7	INTRON	INTRON	HP1BP3	ENSG00000127483.19	ENST00000438032.6:ENST00000312239.10:ENST00000375003.6:ENST00000419948.5:ENST00000424732.5	protein_coding	protein_coding	protein_coding	protein_coding	5	63	2	1.96805	2.523335	3.07862	0.0109533	0.0060153	0.0925675	0.0674604
chr1	100115047	100115146	515679	0	-	0.242424	[0,0.28]	chr1	60466	42	INTRON	INTRON	SASS6	ENSG00000156876.10	ENST00000462159.1:ENST00000287482.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	80	2	2.22743	2.523325	2.81922	0.0197411	0.0097118	0.109608	0.0875962
chr10	11884656	11884756	4556429	0	-	0.37	(0.35,0.378]	chr10	420498	100	INTRON	INTRON	PROSER2-AS1	ENSG00000225778.5	ENST00000445498.5	lncRNA	lncRNA	lncRNA	lncRNA	33	490	2	2.22202	2.5233100000000004	2.8246000000000002	1.8567e-4	8.72516e-6	0.0124044	0.00212305
chr5	54046506	54046606	2618269	0	-	0.26	[0,0.28]	chr5	248835	1345	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	131	2	2.4652	2.523285	2.58137	0.00587222	0.00250515	0.0668557	0.0464447
chr22	29286125	29286224	7496245	0	+	0.525253	(0.515,0.57]	chr22	764824	32	INTRON	INTRON	EWSR1	ENSG00000182944.18	ENST00000629659.2:ENST00000332050.10:ENST00000397938.7:ENST00000406548.5:ENST00000437155.6:ENST00000415761.5:ENST00000331029.11:ENST00000483415.5:ENST00000414183.6:ENST00000333395.10:ENST00000332035.10:ENST00000455726.5:ENST00000479135.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	103	2	1.98329	2.52328	3.06327	0.0105419	3.32143e-5	0.0860389	0.00461719
chr1	16277832	16277931	381869	0	-	0.444444	(0.44,0.476]	chr1	44869	207	INTRON	INTRON	FBXO42	ENSG00000037637.11	ENST00000375592.8	protein_coding	protein_coding	protein_coding	protein_coding	2	34	2	2.38219	2.52326	2.66433	0.045456	0.0194358	0.149888	0.119831
chr3	20131146	20131245	1377347	0	+	0.464646	(0.44,0.476]	chr3	145151	32	INTRON	INTRON	KAT2B	ENSG00000114166.8	ENST00000263754.5:ENST00000468111.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	34	2	2.38219	2.52326	2.66433	0.045456	0.0194358	0.149888	0.119831
chr4	25763538	25763637	2119612	0	-	0.454545	(0.44,0.476]	chr4	209358	37	INTRON	INTRON	SEL1L3	ENSG00000091490.11	ENST00000264868.9:ENST00000399878.8:ENST00000502949.5:ENST00000510448.5:ENST00000507618.1	protein_coding	protein_coding	protein_coding	protein_coding	2	34	2	2.38219	2.52326	2.66433	0.045456	0.0194358	0.149888	0.119831
chr4	32157067	32157164	1943023	0	+	0.443299	(0.44,0.476]	chr4	194743	13	INTRON	INTRON	LINC02506	ENSG00000251129.3	ENST00000665582.2:ENST00000667252.2:ENST00000660373.2:ENST00000684849.1:ENST00000686730.1:ENST00000685407.1:ENST00000655951.1	lncRNA	lncRNA	lncRNA	lncRNA	2	34	2	2.38219	2.52326	2.66433	0.045456	0.0194358	0.149888	0.119831
chr7	4713451	4713551	3270227	0	+	0.45	(0.44,0.476]	chr7	303884	302	INTRON	INTRON	FOXK1	ENSG00000164916.11	ENST00000328914.5	protein_coding	protein_coding	protein_coding	protein_coding	2	34	2	2.38219	2.52326	2.66433	0.045456	0.0194358	0.149888	0.119831
chr3	141902727	141902825	1526337	0	+	0.428571	(0.408,0.44]	chr3	159012	1	INTRON	INTRON	ATP1B3	ENSG00000069849.11	ENST00000475483.5:ENST00000465172.5:ENST00000286371.8:ENST00000466678.5:ENST00000462082.1:ENST00000495216.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	56	2	1.75791	2.523215	3.28852	0.0378795	0.00287185	0.157034	0.0474836
chr17	31945929	31946028	6595766	0	+	0.343434	(0.32,0.35]	chr17	641548	51	INTRON	INTRON	SUZ12	ENSG00000178691.11	ENST00000322652.10:ENST00000580398.1	protein_coding	protein_coding	protein_coding	protein_coding	5	90	2	2.18092	2.52306	2.8652	0.0256608	4.9686e-4	0.120491	0.0201536
chr2	107704219	107704319	1205591	0	-	0.42	(0.408,0.44]	chr2	128526	5	INTRON	INTRON	LINC01885:ENSG00000286769	ENSG00000237880.2:ENSG00000286769.1	ENST00000654481.1:ENST00000669817.1	lncRNA	lncRNA	lncRNA	lncRNA	10	149	2	2.3372	2.5230550000000003	2.70891	0.00122451	2.61047e-4	0.0324961	0.0149055
chr16	23908545	23908644	6324486	0	+	0.626263	(0.57,1]	chr16	605701	148	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000498739.1	protein_coding	protein_coding	protein_coding	protein_coding	14	75	2	1.25509	2.5229749999999997	3.79086	0.0271267	3.99829e-6	0.123904	0.00131958
chr11	95819600	95819698	4853831	0	+	0.418367	(0.408,0.44]	chr11	452725	3	INTRON	INTRON	CEP57	ENSG00000166037.11	ENST00000537677.5:ENST00000325486.9:ENST00000325542.10:ENST00000539855.5:ENST00000540830.5:ENST00000538658.5:ENST00000541150.5:ENST00000537093.5:ENST00000535224.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	46	2	2.39162	2.52291	2.6542	0.0227514	0.0105837	0.117618	0.0911864
chr16	28208086	28208186	6468427	0	-	0.43	(0.408,0.44]	chr16	624597	267	INTRON	INTRON	XPO6	ENSG00000169180.12	ENST00000304658.10:ENST00000565698.5:ENST00000569951.1:ENST00000566073.1	protein_coding	protein_coding	protein_coding	protein_coding	3	46	2	2.39162	2.52291	2.6542	0.0227514	0.0105837	0.117618	0.0911864
chr19	2786848	2786948	6997455	0	+	0.55	(0.515,0.57]	chr19	693772	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	THOP1	ENSG00000172009.15	ENST00000307741.11:ENST00000585673.5:ENST00000585338.1:ENST00000586780.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	48	2	1.91916	2.522895	3.12663	0.0231902	0.00374498	0.118148	0.0562234
chr11	120487953	120488052	4877771	0	+	0.363636	(0.35,0.378]	chr11	456003	30	UTR3	UTR3:EXON_MRNA	ARHGEF12	ENSG00000196914.9	ENST00000397843.7:ENST00000532993.5	protein_coding	protein_coding	protein_coding	protein_coding	5	81	2	2.4475	2.5228849999999996	2.59827	0.0106974	0.0016492	0.0862205	0.0375159
chr2	176316716	176316815	925691	0	+	0.292929	(0.28,0.32]	chr2	101688	120	INTRON	INTRON	MTX2	ENSG00000128654.14	ENST00000420864.5:ENST00000249442.11:ENST00000423461.6:ENST00000443241.5:ENST00000452865.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	70	2	2.21798	2.5228349999999997	2.82769	0.0169391	0.00901091	0.103888	0.0851009
chr11	2967523	2967622	4891741	0	-	0.525253	(0.515,0.57]	chr11	458317	24	INTRON	INTRON	NAP1L4	ENSG00000205531.13	ENST00000620138.4:ENST00000380542.9:ENST00000526115.5:ENST00000492685.5:ENST00000532325.6:ENST00000448187.5:ENST00000399614.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	40	2	1.79136	2.5227399999999998	3.25412	0.0638444	0.00224554	0.177811	0.0435144
chr17	39922077	39922171	6767477	0	-	0.521277	(0.515,0.57]	chr17	665677	12	UTR3	UTR3:EXON_MRNA	ORMDL3	ENSG00000172057.10	ENST00000579695.5:ENST00000304046.7:ENST00000581284.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	40	2	1.79136	2.5227399999999998	3.25412	0.0638444	0.00224554	0.177811	0.0435144
chr17	28721574	28721667	6584857	0	+	0.483871	(0.476,0.515]	chr17	640195	3	INTRON	INTRON	RPL23A	ENSG00000198242.14	ENST00000422514.7:ENST00000496182.5:ENST00000394938.8:ENST00000394935.7:ENST00000355731.8:ENST00000472628.1:ENST00000578181.1	protein_coding	protein_coding	protein_coding	protein_coding	10	140	2	1.58148	2.52273	3.46398	0.0175606	2.13441e-5	0.11319	0.00377331
chr18	36131752	36131850	6891433	0	+	0.367347	(0.35,0.378]	chr18	682952	13	INTRON	INTRON	ELP2	ENSG00000134759.14	ENST00000543127.5:ENST00000544267.5:ENST00000351393.10:ENST00000541190.5:ENST00000545632.5:ENST00000442325.6:ENST00000358232.11:ENST00000423854.6:ENST00000539560.5:ENST00000535488.5:ENST00000540135.5:ENST00000542430.5:ENST00000350494.10:ENST00000542824.5:ENST00000540799.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	52	2	2.32443	2.5226800000000003	2.72093	0.0544216	0.00314173	0.164972	0.0514466
chr11	756794	756891	4720431	0	+	0.453608	(0.44,0.476]	chr11	436400	4	INTRON	INTRON	TALDO1	ENSG00000177156.11	ENST00000528070.5:ENST00000528097.5:ENST00000530440.1:ENST00000319006.8:ENST00000530119.5:ENST00000533796.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	76	2	1.5358	2.5226699999999997	3.50954	0.0263135	0.00116647	0.133676	0.0312127
chr17	29411496	29411596	6585847	0	+	0.5	(0.476,0.515]	chr17	640377	75	INTRON	INTRON	TAOK1	ENSG00000160551.12	ENST00000261716.8:ENST00000583121.5:ENST00000587277.1:ENST00000536202.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	104	2	2.21025	2.522635	2.83502	0.00913757	1.72457e-4	0.0812335	0.0113919
chr9	93452988	93453088	4158058	0	+	0.41	(0.408,0.44]	chr9	379127	2	INTRON	INTRON	FAM120A	ENSG00000048828.17	ENST00000277165.11:ENST00000375389.7:ENST00000446420.2	protein_coding	protein_coding	protein_coding	protein_coding	3	46	2	2.14732	2.522635	2.89795	0.0237354	0.0110735	0.129075	0.0873897
chr17	1377538	1377638	6699382	0	-	0.51	(0.476,0.515]	chr17	655552	74	INTRON	INTRON	YWHAE	ENSG00000108953.17	ENST00000264335.13:ENST00000571732.5:ENST00000573026.1:ENST00000573196.5:ENST00000575977.1:ENST00000469398.5:ENST00000486241.1:ENST00000489287.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	61	2	2.365	2.522615	2.68023	0.0128901	0.00353671	0.0926667	0.0546236
chr15	92914576	92914675	6103836	0	+	0.323232	(0.32,0.35]	chr15	581401	56	INTRON	INTRON	ENSG00000279765:CHD2	ENSG00000279765.3:ENSG00000173575.22	ENST00000629685.2:ENST00000630790.1:ENST00000626874.2:ENST00000394196.9:ENST00000635856.1:ENST00000420239.7:ENST00000628375.2:ENST00000625990.3:ENST00000626782.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	111	2	2.32039	2.5225600000000004	2.72473	0.00433316	0.00157464	0.0579683	0.036631
chr2	28754873	28754973	724680	0	+	0.35	(0.32,0.35]	chr2	83720	23	INTRON	INTRON	PPP1CB	ENSG00000213639.10	ENST00000455580.5:ENST00000420282.5:ENST00000441461.5:ENST00000427786.1:ENST00000358506.6:ENST00000296122.10:ENST00000395366.3:ENST00000464273.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	53	2	2.35591	2.5225600000000004	2.68921	0.0230336	0.0128129	0.118056	0.0990564
chr17	32373708	32373807	6598232	0	+	0.272727	[0,0.28]	chr17	641948	4	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	ZNF207	ENSG00000010244.19	ENST00000394670.9:ENST00000577908.5:ENST00000581531.5:ENST00000579810.2:ENST00000584416.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	150	2	2.24051	2.52256	2.80461	0.00730565	9.57163e-4	0.0734898	0.0284484
chr2	235502542	235502642	1041420	0	+	0.41	(0.408,0.44]	chr2	111217	73	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	117	2	2.43321	2.5225049999999998	2.6118	0.0019051	5.80745e-4	0.0394485	0.0218949
chr13	95228426	95228526	5639142	0	-	0.5	(0.476,0.515]	chr13	537151	173	INTRON	INTRON	ABCC4	ENSG00000125257.16	ENST00000645237.2:ENST00000643051.1:ENST00000643842.1:ENST00000646439.1:ENST00000643816.1:ENST00000536256.3:ENST00000643556.1:ENST00000629385.1:ENST00000642524.1:ENST00000645532.1:ENST00000644471.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	46	2	1.99341	2.522465	3.05152	0.037389	0.0064848	0.155878	0.0699952
chr10	73031267	73031366	4647180	0	-	0.474747	(0.44,0.476]	chr10	427500	5	INTRON	INTRON	P4HA1	ENSG00000122884.13	ENST00000394890.7:ENST00000307116.6:ENST00000373008.6:ENST00000440381.5:ENST00000263556.3	protein_coding	protein_coding	protein_coding	protein_coding	8	113	2	2.48067	2.52245	2.56423	0.00226303	5.78772e-4	0.0425438	0.0218339
chr6	135051147	135051243	3225439	0	-	0.53125	(0.515,0.57]	chr6	299871	1	INTRON	INTRON	HBS1L	ENSG00000112339.15	ENST00000367837.10:ENST00000415177.6:ENST00000367826.6:ENST00000314674.7:ENST00000524715.5:ENST00000529882.5:ENST00000367822.9:ENST00000367820.6:ENST00000525067.1	protein_coding	protein_coding	protein_coding	protein_coding	3	40	2	2.21273	2.5223050000000002	2.83188	0.0196151	0.0108207	0.109486	0.0920575
chr19	45519562	45519659	7080321	0	+	0.525773	(0.515,0.57]	chr19	708221	11	INTRON	INTRON	VASP	ENSG00000125753.14	ENST00000245932.11:ENST00000592139.1:ENST00000590603.1:ENST00000586014.5:ENST00000586619.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	110	2	2.16572	2.522255	2.87879	0.0029374	1.06927e-4	0.0483262	0.00876441
chr5	140418738	140418838	2502995	0	+	0.52	(0.515,0.57]	chr5	239166	161	INTRON	INTRON	ANKHD1	ENSG00000131503.21	ENST00000297183.10:ENST00000616482.4:ENST00000360839.7:ENST00000421134.5:ENST00000394723.7:ENST00000511151.5:ENST00000394722.7	protein_coding	protein_coding	protein_coding	protein_coding	5	55	2	1.5060500000000001	2.522245	3.53844	0.0511812	7.92613e-4	0.176696	0.0259663
chr22	49625707	49625798	7602343	0	-	0.461538	(0.44,0.476]	chr22	778588	4	INTRON	INTRON	MIR3667HG	ENSG00000188511.13	ENST00000414287.5:ENST00000416411.1:ENST00000689875.1:ENST00000400023.5:ENST00000405854.5:ENST00000444628.2	lncRNA	lncRNA	lncRNA	lncRNA	7	76	2	1.57262	2.52221	3.4718	0.0230575	0.00136358	0.126603	0.0336321
chr11	112090678	112090778	4865527	0	+	0.43	(0.408,0.44]	chr11	454026	2	SS3_PROX	SS3_PROX:INTRON	SDHD	ENSG00000204370.13	ENST00000528182.5:ENST00000528021.6:ENST00000375549.8:ENST00000528048.5:ENST00000525291.5:ENST00000526592.5:ENST00000530923.5:ENST00000534010.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	77	2	2.03431	2.522205	3.0101	0.0154896	0.00109848	0.108998	0.0304585
chr3	47733355	47733454	1684587	0	-	0.494949	(0.476,0.515]	chr3	172094	39	INTRON	INTRON	SMARCC1	ENSG00000173473.11	ENST00000254480.10:ENST00000425518.5:ENST00000485833.1:ENST00000454240.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	72	2	1.69382	2.522205	3.35059	0.0219532	0.00171515	0.115201	0.0381936
chr10	74015932	74016031	4454679	0	+	0.414141	(0.408,0.44]	chr10	411385	172	INTRON	INTRON	VCL	ENSG00000035403.18	ENST00000623461.3:ENST00000372755.7:ENST00000624354.3:ENST00000211998.10:ENST00000478896.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	103	2	1.97721	2.522195	3.06718	0.0121661	1.33986e-4	0.0910127	0.00998237
chr1	22063652	22063748	42312	0	+	0.28125	(0.28,0.32]	chr1	5077	17	UTR5	UTR5:EXON_MRNA:SS3_PROX:INTRON	ENSG00000289694:CDC42:CDC42-IT1	ENSG00000289694.1:ENSG00000070831.18:ENSG00000230068.2	ENST00000695855.1:ENST00000695856.1:ENST00000344548.8:ENST00000400259.5:ENST00000667384.2:ENST00000411827.2:ENST00000695858.1:ENST00000695857.1:ENST00000315554.14:ENST00000695859.1:ENST00000498236.1:ENST00000656825.1:ENST00000651171.1:ENST00000652582.1:ENST00000695860.1:ENST00000695796.1:ENST00000695797.1:ENST00000662562.2:ENST00000695798.1:ENST00000431803.2:ENST00000695799.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:nonsense_mediated_decay:lncRNA	5	94	2	2.47671	2.52218	2.56765	0.00835086	0.00327955	0.0774402	0.0527031
chr19	11092703	11092802	7016845	0	+	0.484848	(0.476,0.515]	chr19	697422	14	INTRON	INTRON	LDLR	ENSG00000130164.14	ENST00000557933.5:ENST00000558518.6:ENST00000545707.5:ENST00000535915.5:ENST00000455727.6:ENST00000557958.1:ENST00000560502.5:ENST00000558013.5:ENST00000252444.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	11	160	2	2.44393	2.5221299999999998	2.60033	7.12759e-4	2.517e-4	0.0243332	0.0146779
chr1	29061683	29061783	60446	0	+	0.44	(0.408,0.44]	chr1	7726	8	INTRON	INTRON	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000647918.1:ENST00000646800.1:ENST00000644342.1:ENST00000646189.1:ENST00000482464.6:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000646260.1:ENST00000373798.5:ENST00000644600.1:ENST00000649674.1:ENST00000643173.1:ENST00000343067.9:ENST00000644780.1:ENST00000650265.1:ENST00000648181.1:ENST00000643604.1:ENST00000648891.1:ENST00000373797.2:ENST00000349460.9:ENST00000645184.1:ENST00000645111.1:ENST00000643302.1:ENST00000642643.1:ENST00000636666.1:ENST00000644848.1:ENST00000644470.1:ENST00000646871.1:ENST00000488277.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	12	171	2	2.38209	2.52212	2.66215	0.0013549	6.68072e-5	0.0336321	0.00677892
chrX	44945983	44946083	7649330	0	+	0.32	(0.28,0.32]	chrX	782726	716	INTRON	INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000675440.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000621147.5:ENST00000475233.1:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	58	2	2.4721	2.522025	2.57195	0.0331711	0.00906617	0.133994	0.0854289
chr19	10807220	10807314	7014687	0	+	0.457447	(0.44,0.476]	chr19	697017	9	INTRON	INTRON	DNM2	ENSG00000079805.19	ENST00000355667.11:ENST00000389253.9:ENST00000585892.5:ENST00000359692.10:ENST00000408974.8:ENST00000587830.2:ENST00000681972.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	17	220	2	2.24995	2.52194	2.79393	1.91161e-4	1.57972e-4	0.0120333	0.0114628
chr7	157205200	157205300	3454615	0	+	0.42	(0.408,0.44]	chr7	322965	30	INTRON	INTRON	UBE3C	ENSG00000009335.18	ENST00000348165.10	protein_coding	protein_coding	protein_coding	protein_coding	4	62	2	2.21857	2.52184	2.82511	0.0209591	0.00189528	0.112046	0.0402736
chr3	138776204	138776304	1830913	0	-	0.25	[0,0.28]	chr3	184056	57	INTRON	INTRON	PIK3CB	ENSG00000051382.9	ENST00000674063.1:ENST00000477593.5:ENST00000462898.5:ENST00000483968.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	67	2	2.1357	2.5218350000000003	2.90797	0.0338175	0.0118539	0.134476	0.0962115
chr3	57596076	57596176	1706277	0	-	0.52	(0.515,0.57]	chr3	175950	113	INTRON	INTRON	ARF4	ENSG00000168374.11	ENST00000303436.11:ENST00000496292.5:ENST00000489843.1:ENST00000486310.5:ENST00000483848.5:ENST00000463880.1:ENST00000493378.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	88	2	2.46665	2.5218100000000003	2.57697	0.00153959	0.00127844	0.0362709	0.0326395
chr3	49037913	49038012	1691670	0	-	0.373737	(0.35,0.378]	chr3	173130	42	INTRON	INTRON	QRICH1	ENSG00000198218.11	ENST00000395443.7:ENST00000357496.6:ENST00000424300.5:ENST00000489642.5:ENST00000498440.5:ENST00000479449.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	68	2	2.44701	2.5217850000000004	2.59656	0.00900997	0.00638551	0.0851009	0.0693551
chr22	28579756	28579856	7571933	0	-	0.48	(0.476,0.515]	chr22	774287	1368	INTRON	INTRON	TTC28	ENSG00000100154.15	ENST00000397906.7	protein_coding	protein_coding	protein_coding	protein_coding	3	46	2	1.79693	2.521615	3.2463	0.0649782	0.00262374	0.179417	0.0470772
chr4	169597699	169597799	2297013	0	-	0.51	(0.476,0.515]	chr4	222273	65	INTRON	INTRON	NEK1	ENSG00000137601.18	ENST00000687054.1:ENST00000507142.6:ENST00000686697.1:ENST00000688934.1:ENST00000685111.1:ENST00000687528.1:ENST00000687643.1:ENST00000439128.6:ENST00000511633.5:ENST00000510533.5:ENST00000512193.5:ENST00000693604.1:ENST00000692450.1:ENST00000687219.1:ENST00000693085.1:ENST00000509912.5:ENST00000690631.1:ENST00000688487.1:ENST00000688653.1:ENST00000692868.1:ENST00000692218.1:ENST00000505119.2:ENST00000510108.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	46	2	1.79693	2.521615	3.2463	0.0649782	0.00262374	0.179417	0.0470772
chr20	5547074	5547171	7311681	0	-	0.412371	(0.408,0.44]	chr20	744503	28	UTR3	UTR3:EXON_MRNA	GPCPD1	ENSG00000125772.14	ENST00000379019.7:ENST00000481038.5:ENST00000418646.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	14	144	2	1.4847	2.52161	3.55852	0.0115927	7.50862e-5	0.0962115	0.00777227
chr12	42347203	42347303	5118431	0	+	0.37	(0.35,0.378]	chr12	482925	29	INTRON	INTRON	PPHLN1	ENSG00000134283.18	ENST00000549190.5:ENST00000337898.10:ENST00000395580.7:ENST00000610488.4:ENST00000619544.4:ENST00000613154.4:ENST00000549774.5:ENST00000551723.5:ENST00000552429.5:ENST00000395568.6:ENST00000256678.12:ENST00000358314.12:ENST00000449194.6:ENST00000552761.5:ENST00000551406.5:ENST00000317560.13:ENST00000432191.6:ENST00000552202.5:ENST00000550535.5:ENST00000546750.5:ENST00000547847.1:ENST00000551658.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	67	2	2.28125	2.521585	2.76192	0.0182271	0.00265021	0.107842	0.0474328
chr5	177148400	177148500	2553846	0	+	0.55	(0.515,0.57]	chr5	243927	111	INTRON	INTRON	NSD1	ENSG00000165671.22	ENST00000508896.6:ENST00000689549.1:ENST00000354179.9:ENST00000686993.1:ENST00000689326.1:ENST00000439151.7:ENST00000510954.6:ENST00000689345.1:ENST00000347982.9:ENST00000687453.1:ENST00000685206.1:ENST00000638627.3:ENST00000644863.2:ENST00000688613.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	41	2	2.38476	2.52155	2.65834	0.0187418	0.0110593	0.117523	0.0873897
chr15	76227230	76227326	6227481	0	-	0.479167	(0.476,0.515]	chr15	594882	1	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:SS5_PROX:INTRON	ETFA	ENSG00000140374.17	ENST00000690610.1:ENST00000557943.6:ENST00000692691.1:ENST00000688389.1:ENST00000687293.1:ENST00000691695.1:ENST00000685863.1:ENST00000689730.1:ENST00000687975.1:ENST00000693064.1:ENST00000688908.1:ENST00000691021.1:ENST00000433983.6:ENST00000557975.5:ENST00000267950.12:ENST00000685548.1:ENST00000565910.6:ENST00000688154.1:ENST00000560179.2:ENST00000560595.6:ENST00000560726.5:ENST00000559602.5:ENST00000560044.6:ENST00000559973.5:ENST00000559386.2:ENST00000560899.5:ENST00000685118.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	77	2	1.37743	2.52154	3.66565	0.0477443	4.18031e-4	0.153019	0.0182827
chr6	87179153	87179253	2913494	0	+	0.52	(0.515,0.57]	chr6	275281	89	INTRON	INTRON	ZNF292	ENSG00000188994.13	ENST00000369577.8:ENST00000369578.6:ENST00000518845.1:ENST00000339907.8:ENST00000496806.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	145	2	2.40081	2.521515	2.64222	5.52433e-4	1.00702e-4	0.0216254	0.00847812
chr3	47162027	47162127	1681585	0	-	0.36	(0.35,0.378]	chr3	171624	350	INTRON	INTRON	SETD2	ENSG00000181555.22	ENST00000691544.1:ENST00000638947.2:ENST00000409792.4:ENST00000412450.1	protein_coding	protein_coding	protein_coding	protein_coding	4	67	2	2.4077	2.521485	2.63527	0.0122026	0.00443588	0.0910127	0.061054
chr1	241852597	241852684	344416	0	+	0.436782	(0.408,0.44]	chr1	40096	2	SS5_PROX	SS5_PROX:INTRON	EXO1	ENSG00000174371.17	ENST00000366548.8:ENST00000423131.5:ENST00000523590.5:ENST00000348581.9:ENST00000518483.5:ENST00000437497.5:ENST00000450748.1:ENST00000493702.5:ENST00000469419.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	61	2	2.29777	2.5214749999999997	2.74518	0.0152229	0.0067764	0.108535	0.0711802
chr7	23464873	23464973	3503611	0	-	0.32	(0.28,0.32]	chr7	326910	337	INTRON	INTRON	IGF2BP3	ENSG00000136231.14	ENST00000258729.8:ENST00000421467.6:ENST00000468263.5:ENST00000491719.5:ENST00000476938.5:ENST00000468005.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	58	2	1.91611	2.521455	3.1268	0.0539102	0.00508956	0.164153	0.0646039
chr1	110343360	110343458	182384	0	+	0.316327	(0.28,0.32]	chr1	20236	7	INTRON	INTRON	RBM15	ENSG00000162775.17	ENST00000652747.1:ENST00000618772.4:ENST00000487146.8:ENST00000369784.9:ENST00000650953.2:ENST00000654015.1:ENST00000617047.1	protein_coding	protein_coding	protein_coding	protein_coding	8	134	2	1.6518	2.52142	3.39104	0.0193817	3.29346e-4	0.119831	0.0167902
chr3	141881557	141881657	1526124	0	+	0.36	(0.35,0.378]	chr3	159005	36	INTRON	INTRON	ATP1B3	ENSG00000069849.11	ENST00000475483.5:ENST00000465172.5:ENST00000286371.8:ENST00000466678.5:ENST00000462082.1:ENST00000495216.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	92	2	2.24809	2.5214049999999997	2.79472	0.00361961	0.00303911	0.0554656	0.0493883
chr14	21256968	21257066	5835042	0	-	0.397959	(0.378,0.408]	chr14	554465	20	INTRON	INTRON	HNRNPC	ENSG00000092199.19	ENST00000336053.10:ENST00000553300.6:ENST00000554969.5:ENST00000556142.5:ENST00000554455.5:ENST00000430246.6:ENST00000553753.5:ENST00000555309.5:ENST00000555914.5:ENST00000557442.5:ENST00000556628.5:ENST00000556513.5:ENST00000555883.5:ENST00000557201.5:ENST00000556897.5:ENST00000420743.6:ENST00000554539.5:ENST00000554383.5:ENST00000555215.5:ENST00000555137.5:ENST00000554891.5:ENST00000556226.5:ENST00000555176.5:ENST00000553614.5:ENST00000557336.1:ENST00000557768.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	163	2	2.38009	2.521375	2.66266	0.00145972	1.18377e-4	0.0345816	0.00930884
chr21	37081985	37082083	7404908	0	+	0.540816	(0.515,0.57]	chr21	754522	5	UTR5	UTR5:EXON_MRNA:INTRON	TTC3	ENSG00000182670.14	ENST00000492275.6:ENST00000418766.6:ENST00000485402.5:ENST00000450533.6:ENST00000438055.5:ENST00000696812.1:ENST00000696811.1:ENST00000463216.6:ENST00000481605.6:ENST00000540756.5:ENST00000494243.5:ENST00000399010.5:ENST00000411496.2:ENST00000399017.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	63	2	2.41022	2.5213599999999996	2.6325	0.00439001	0.00332441	0.0585064	0.0528673
chr6	31741486	31741586	2843492	0	+	0.52	(0.515,0.57]	chr6	267765	2	SS5_PROX	SS5_PROX:INTRON	MSH5:MSH5-SAPCD1	ENSG00000204410.16:ENSG00000255152.8	ENST00000652715.1:ENST00000375755.8:ENST00000425703.5:ENST00000375750.9:ENST00000482280.1:ENST00000463094.5:ENST00000650702.1:ENST00000493662.6:ENST00000375703.7:ENST00000375740.7:ENST00000423982.6:ENST00000463144.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	63	2	2.41022	2.5213599999999996	2.6325	0.00439001	0.00332441	0.0585064	0.0528673
chr1	27449516	27449616	406358	0	-	0.51	(0.476,0.515]	chr1	48986	202	INTRON	INTRON	WASF2	ENSG00000158195.11	ENST00000618852.5:ENST00000536657.1	protein_coding	protein_coding	protein_coding	protein_coding	3	46	2	2.16377	2.52128	2.87879	0.0243026	0.00999149	0.12011	0.0879541
chr17	78794957	78795056	6845915	0	-	0.484848	(0.476,0.515]	chr17	677357	25	INTRON	INTRON	USP36	ENSG00000055483.20	ENST00000588130.5:ENST00000587010.5:ENST00000591052.5:ENST00000589225.5:ENST00000587379.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	46	2	2.16377	2.52128	2.87879	0.0243026	0.00999149	0.12011	0.0879541
chr19	7935950	7936048	7130248	0	-	0.479592	(0.476,0.515]	chr19	718334	3	INTRON	INTRON	TIMM44	ENSG00000104980.8	ENST00000270538.8:ENST00000595831.5:ENST00000595876.5:ENST00000597926.1:ENST00000600748.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	89	2	2.17347	2.521275	2.86908	0.010447	4.03011e-4	0.0855102	0.0180338
chr7	107209728	107209827	3609465	0	-	0.464646	(0.44,0.476]	chr7	336605	20	UTR3	UTR3:EXON_MRNA:INTRON	COG5	ENSG00000164597.15	ENST00000297135.9:ENST00000347053.8:ENST00000393603.7	protein_coding	protein_coding	protein_coding	protein_coding	4	62	2	2.13779	2.521095	2.9044	0.0264596	0.00132926	0.122506	0.0335085
chr15	77131904	77132004	6234737	0	-	0.47	(0.44,0.476]	chr15	595257	162	INTRON	INTRON	PEAK1	ENSG00000173517.11	ENST00000560626.6:ENST00000682557.1:ENST00000312493.5	protein_coding	protein_coding	protein_coding	protein_coding	2	34	2	2.29842	2.52107	2.74372	0.0552483	0.0153007	0.165463	0.108569
chr16	69660797	69660897	6380967	0	+	0.46	(0.44,0.476]	chr16	613211	5	INTRON	INTRON	NFAT5	ENSG00000102908.22	ENST00000426654.6:ENST00000349945.7:ENST00000354436.6:ENST00000627621.3:ENST00000650987.1:ENST00000567990.5:ENST00000567239.5:ENST00000393742.7:ENST00000565301.2:ENST00000566899.6:ENST00000563474.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	34	2	2.29842	2.52107	2.74372	0.0552483	0.0153007	0.165463	0.108569
chr2	105748585	105748685	843726	0	+	0.47	(0.44,0.476]	chr2	94498	23	INTRON	INTRON	NCK2	ENSG00000071051.14	ENST00000233154.9:ENST00000451463.6:ENST00000393348.6	protein_coding	protein_coding	protein_coding	protein_coding	2	34	2	2.29842	2.52107	2.74372	0.0552483	0.0153007	0.165463	0.108569
chr4	87139556	87139655	1995873	0	+	0.444444	(0.44,0.476]	chr4	199151	40	UTR3	UTR3:EXON_MRNA	AFF1	ENSG00000172493.23	ENST00000395146.9:ENST00000544085.6:ENST00000307808.10	protein_coding	protein_coding	protein_coding	protein_coding	2	34	2	2.29842	2.52107	2.74372	0.0552483	0.0153007	0.165463	0.108569
chr15	63553114	63553214	6042401	0	+	0.32	(0.28,0.32]	chr15	575406	80	INTRON	INTRON	USP3	ENSG00000140455.17	ENST00000540797.5:ENST00000380324.8:ENST00000561442.5:ENST00000560070.5:ENST00000557884.5:ENST00000558157.5:ENST00000561326.5:ENST00000559873.5:ENST00000559192.5:ENST00000559771.5:ENST00000268049.11:ENST00000558285.5:ENST00000559257.5:ENST00000538686.6:ENST00000559711.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	78	2	2.33381	2.5210600000000003	2.70831	0.0174951	0.00378444	0.104863	0.0562562
chr6	8081724	8081823	3054648	0	-	0.252525	[0,0.28]	chr6	284122	13	INTRON	INTRON	EEF1E1	ENSG00000124802.12	ENST00000429723.6:ENST00000502429.5:ENST00000379715.10	protein_coding	protein_coding	protein_coding	protein_coding	4	79	2	1.99345	2.52106	3.04867	0.0211881	0.0104221	0.123133	0.085482
chr16	89412763	89412863	6542817	0	-	0.42	(0.408,0.44]	chr16	634259	2	SS3_PROX	SS3_PROX:INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000647238.1:ENST00000644045.1:ENST00000643147.1:ENST00000644139.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	63	2	2.05947	2.5210350000000004	2.9826	0.0333232	9.23082e-4	0.134145	0.0278392
chr1	1672029	1672129	360751	0	-	0.38	(0.378,0.408]	chr1	41996	4	SS3_PROX	SS3_PROX:INTRON	SLC35E2B	ENSG00000189339.12	ENST00000614300.4:ENST00000617444.5:ENST00000611123.1:ENST00000481276.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	64	2	2.21238	2.521025	2.82967	0.0218124	0.00189968	0.11491	0.0402736
chr17	57996541	57996640	6799942	0	-	0.343434	(0.32,0.35]	chr17	671423	18	INTRON	INTRON	ENSG00000266086	ENSG00000266086.3	ENST00000578794.2:ENST00000665125.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	9	145	2	2.09272	2.52101	2.9493	0.00295812	5.42962e-4	0.0499765	0.0215026
chr1	215583439	215583537	314346	0	+	0.479592	(0.476,0.515]	chr1	36233	24	INTRON	INTRON	KCTD3	ENSG00000136636.13	ENST00000259154.9	protein_coding	protein_coding	protein_coding	protein_coding	4	55	2	1.69138	2.520985	3.35059	0.0481165	0.00171515	0.153019	0.0381936
chr5	131777337	131777436	2720548	0	-	0.393939	(0.378,0.408]	chr5	255730	323	INTRON	INTRON	FNIP1	ENSG00000217128.13	ENST00000510461.6:ENST00000307954.12:ENST00000307968.11:ENST00000511848.1	protein_coding	protein_coding	protein_coding	protein_coding	4	65	2	2.05897	2.52096	2.98295	0.0339294	9.47389e-4	0.134508	0.0282007
chrX	24058539	24058634	7630771	0	+	0.463158	(0.44,0.476]	chrX	781449	4	INTRON	INTRON	EIF2S3	ENSG00000130741.11	ENST00000487075.1:ENST00000253039.9:ENST00000423068.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	46	2	1.83899	2.520945	3.2029	0.0589734	0.00308681	0.167915	0.0510391
chr11	66655268	66655368	4811203	0	+	0.5	(0.476,0.515]	chr11	447918	30	INTRON	INTRON	RBM4	ENSG00000173933.21	ENST00000396053.9	protein_coding	protein_coding	protein_coding	protein_coding	4	55	2	1.7425	2.5209449999999998	3.29939	0.0417334	0.00211868	0.147007	0.0425644
chr2	167913752	167913852	1258940	0	-	0.39	(0.378,0.408]	chr2	133340	126	INTRON	INTRON	B3GALT1-AS1	ENSG00000235335.3	ENST00000430546.2:ENST00000657553.1:ENST00000670221.1:ENST00000436982.2	lncRNA	lncRNA	lncRNA	lncRNA	8	107	2	1.59634	2.520925	3.44551	0.0244222	8.68398e-5	0.12011	0.00783027
chr1	45618141	45618236	93571	0	+	0.368421	(0.35,0.378]	chr1	12658	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	NASP	ENSG00000132780.17	ENST00000537798.5:ENST00000350030.8:ENST00000372052.8:ENST00000351223.7:ENST00000530073.5:ENST00000481782.1:ENST00000531612.5:ENST00000534450.1:ENST00000472408.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	37	2	2.24535	2.52089	2.79643	0.0647516	0.013543	0.179192	0.101363
chr16	87747284	87747383	6538485	0	-	0.353535	(0.35,0.378]	chr16	633538	44	INTRON	INTRON	KLHDC4	ENSG00000104731.14	ENST00000567298.5:ENST00000270583.10:ENST00000347925.9:ENST00000353170.9:ENST00000316853.10:ENST00000562155.5:ENST00000622456.4:ENST00000562261.1:ENST00000566661.5:ENST00000564484.5:ENST00000565328.5:ENST00000569747.5:ENST00000564396.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	81	2	2.20121	2.52089	2.84057	0.0104157	0.00189462	0.085482	0.0402736
chr2	24659664	24659764	710948	0	+	0.37	(0.35,0.378]	chr2	82237	5	INTRON	INTRON	NCOA1	ENSG00000084676.16	ENST00000348332.8:ENST00000406961.5:ENST00000405141.5:ENST00000407230.5:ENST00000288599.9:ENST00000395856.3	protein_coding	protein_coding	protein_coding	protein_coding	2	37	2	2.24535	2.52089	2.79643	0.0647516	0.013543	0.179192	0.101363
chr4	23186010	23186108	1930001	0	+	0.367347	(0.35,0.378]	chr4	194012	2	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	ENSG00000248837	ENSG00000248837.7	ENST00000661585.1:ENST00000663348.1	lncRNA	lncRNA	lncRNA	lncRNA	2	37	2	2.24535	2.52089	2.79643	0.0647516	0.013543	0.179192	0.101363
chr5	44826655	44826752	2352123	0	+	0.371134	(0.35,0.378]	chr5	226957	7	EXON_LNCRNA	EXON_LNCRNA	ENSG00000272335	ENSG00000272335.1	ENST00000607056.1	lncRNA	lncRNA	lncRNA	lncRNA	2	37	2	2.24535	2.52089	2.79643	0.0647516	0.013543	0.179192	0.101363
chr6	88810516	88810616	3157598	0	-	0.36	(0.35,0.378]	chr6	294197	85	INTRON	INTRON	RNGTT	ENSG00000111880.16	ENST00000369485.9:ENST00000369475.7:ENST00000627296.1:ENST00000538899.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	37	2	2.24535	2.52089	2.79643	0.0647516	0.013543	0.179192	0.101363
chr15	55265590	55265689	6180661	0	-	0.383838	(0.378,0.408]	chr15	589160	52	INTRON	INTRON	RAB27A	ENSG00000069974.16	ENST00000336787.6:ENST00000396307.6:ENST00000564609.5:ENST00000569493.5:ENST00000567380.5:ENST00000565972.5:ENST00000563262.5:ENST00000568803.1:ENST00000567639.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	58	2	2.31181	2.52087	2.72993	0.0188736	0.00548372	0.108861	0.0671431
chr1	93096969	93097069	162716	0	+	0.46	(0.44,0.476]	chr1	17567	156	INTRON	INTRON	MTF2	ENSG00000143033.18	ENST00000540243.5:ENST00000545708.5:ENST00000474314.6:ENST00000370298.9:ENST00000473430.5:ENST00000494963.5:ENST00000471953.5:ENST00000370303.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	34	2	2.46135	2.5208399999999997	2.58033	0.0374637	0.0247511	0.140008	0.131869
chr1	243067524	243067624	667028	0	-	0.46	(0.44,0.476]	chr1	79136	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	LINC01347	ENSG00000214837.8	ENST00000627498.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	2	34	2	2.46135	2.5208399999999997	2.58033	0.0374637	0.0247511	0.140008	0.131869
chr12	56619822	56619922	5335549	0	-	0.46	(0.44,0.476]	chr12	510086	19	INTRON	INTRON	BAZ2A	ENSG00000076108.12	ENST00000379441.7:ENST00000549884.6:ENST00000551812.5:ENST00000551959.1:ENST00000546695.5:ENST00000549506.5:ENST00000550730.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	34	2	2.46135	2.5208399999999997	2.58033	0.0374637	0.0247511	0.140008	0.131869
chr12	64637826	64637926	5155271	0	+	0.47	(0.44,0.476]	chr12	488093	263	INTRON	INTRON	RASSF3	ENSG00000153179.13	ENST00000637125.1:ENST00000542104.6:ENST00000283172.8:ENST00000336061.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	34	2	2.46135	2.5208399999999997	2.58033	0.0374637	0.0247511	0.140008	0.131869
chr4	77896349	77896449	1980206	0	+	0.45	(0.44,0.476]	chr4	198347	17	INTRON	INTRON	MRPL1	ENSG00000169288.18	ENST00000315567.13:ENST00000502384.3:ENST00000506674.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	34	2	2.46135	2.5208399999999997	2.58033	0.0374637	0.0247511	0.140008	0.131869
chr22	31487724	31487823	7578380	0	-	0.464646	(0.44,0.476]	chr22	775510	155	INTRON	INTRON	EIF4ENIF1	ENSG00000184708.18	ENST00000344710.9:ENST00000330125.10:ENST00000397525.5:ENST00000397523.5:ENST00000423097.5:ENST00000397520.1:ENST00000397518.5	protein_coding	protein_coding	protein_coding	protein_coding	4	62	2	2.44514	2.52073	2.59632	0.0087381	0.00579248	0.0845538	0.0662959
chr8	128006790	128006889	3862200	0	+	0.313131	(0.28,0.32]	chr8	355509	76	INTRON	INTRON	PVT1	ENSG00000249859.13	ENST00000667305.1:ENST00000690350.1:ENST00000653522.1:ENST00000661830.1:ENST00000657289.1:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000657211.1:ENST00000653845.1:ENST00000651587.1:ENST00000692980.1:ENST00000654324.1:ENST00000657693.1:ENST00000666080.1:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000662410.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000657356.1:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000667714.1:ENST00000654105.1:ENST00000660438.1:ENST00000664995.1:ENST00000670714.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000668123.1:ENST00000666776.1:ENST00000659912.1:ENST00000670532.1:ENST00000523068.2:ENST00000671088.1:ENST00000670204.1:ENST00000663461.1:ENST00000513868.6:ENST00000692433.1:ENST00000523190.7:ENST00000685606.1:ENST00000690788.1:ENST00000685634.1:ENST00000653990.1:ENST00000655783.1:ENST00000656411.1:ENST00000664742.1:ENST00000655099.1:ENST00000662709.1:ENST00000512617.7:ENST00000660122.1:ENST00000666452.1:ENST00000659666.1:ENST00000659892.1:ENST00000521600.5:ENST00000522875.5:ENST00000653497.1:ENST00000668098.1:ENST00000659106.1:ENST00000666147.1:ENST00000658350.1:ENST00000656999.1:ENST00000664610.1:ENST00000671092.1	lncRNA	lncRNA	lncRNA	lncRNA	3	58	2	1.86684	2.520685	3.17453	0.0605813	0.00429297	0.171122	0.0599065
chr17	56954805	56954904	6799324	0	-	0.353535	(0.35,0.378]	chr17	671328	27	INTRON	INTRON	COIL	ENSG00000121058.5	ENST00000240316.5:ENST00000573008.1	protein_coding	protein_coding	protein_coding	protein_coding	2	37	2	2.47065	2.52057	2.57049	0.0386172	0.0262669	0.142656	0.133676
chr19	4986902	4987002	7003594	0	+	0.37	(0.35,0.378]	chr19	694800	173	INTRON	INTRON	KDM4B	ENSG00000127663.15	ENST00000159111.9:ENST00000611640.4:ENST00000588337.5:ENST00000381759.8	protein_coding	protein_coding	protein_coding	protein_coding	2	37	2	2.47065	2.52057	2.57049	0.0386172	0.0262669	0.142656	0.133676
chr21	46310456	46310556	7471547	0	-	0.36	(0.35,0.378]	chr21	761728	75	INTRON	INTRON	C21orf58	ENSG00000160298.18	ENST00000491666.5:ENST00000397683.5:ENST00000417060.5:ENST00000397682.7:ENST00000291691.12:ENST00000397680.5:ENST00000397679.5:ENST00000472607.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	37	2	2.47065	2.52057	2.57049	0.0386172	0.0262669	0.142656	0.133676
chr3	185792771	185792871	1886026	0	-	0.36	(0.35,0.378]	chr3	188573	941	INTRON	INTRON	IGF2BP2	ENSG00000073792.16	ENST00000382199.7:ENST00000346192.7:ENST00000457616.6:ENST00000421047.3:ENST00000461957.5:ENST00000493302.5:ENST00000466476.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	37	2	2.47065	2.52057	2.57049	0.0386172	0.0262669	0.142656	0.133676
chr7	158783629	158783728	3689349	0	-	0.525253	(0.515,0.57]	chr7	342393	99	INTRON	INTRON	ESYT2	ENSG00000117868.18	ENST00000251527.10:ENST00000275418.13:ENST00000652148.1:ENST00000483958.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	30	2	2.12971	2.520555	2.9114	0.0757903	0.00826019	0.194427	0.0813266
chr16	23421787	23421885	6463768	0	-	0.418367	(0.408,0.44]	chr16	623765	26	INTRON	INTRON	COG7	ENSG00000168434.13	ENST00000307149.10	protein_coding	protein_coding	protein_coding	protein_coding	6	70	2	1.66945	2.520535	3.37162	0.0218479	0.00208674	0.123836	0.0411801
chr20	17967954	17968044	7320564	0	-	0.477778	(0.476,0.515]	chr20	745338	4	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	SNX5	ENSG00000089006.17	ENST00000377768.7:ENST00000490175.5:ENST00000377759.9:ENST00000431277.5:ENST00000419004.2:ENST00000474883.5:ENST00000469704.1:ENST00000606602.1:ENST00000606557.1:ENST00000481323.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	101	2	2.28812	2.52049	2.75286	0.00344676	7.3224e-4	0.0517761	0.0246502
chr5	132880859	132880958	2724409	0	-	0.353535	(0.35,0.378]	chr5	256225	56	UTR3	UTR3:EXON_MRNA	AFF4	ENSG00000072364.13	ENST00000265343.10	protein_coding	protein_coding	protein_coding	protein_coding	3	50	2	1.87717	2.52044	3.16371	0.0555068	0.00383956	0.165463	0.0562562
chr16	16552699	16552799	6311389	0	+	0.38	(0.378,0.408]	chr16	604098	527	INTRON	INTRON	ENSG00000260126	ENSG00000260126.2	ENST00000567465.2	lncRNA	lncRNA	lncRNA	lncRNA	8	107	2	1.64906	2.52041	3.39176	0.0203406	1.17224e-4	0.110499	0.00929802
chr11	31490234	31490333	4939047	0	-	0.535354	(0.515,0.57]	chr11	462601	16	INTRON	INTRON	IMMP1L	ENSG00000148950.11	ENST00000532287.6:ENST00000534812.5:ENST00000526776.5:ENST00000278200.5:ENST00000648582.1:ENST00000533642.1:ENST00000527184.5:ENST00000528161.5:ENST00000532624.5:ENST00000529749.5:ENST00000530023.5:ENST00000531693.1:ENST00000532668.1:ENST00000533921.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	40	2	2.51561	2.520325	2.52504	0.029342	0.00635044	0.128055	0.0723103
chr22	49511283	49511383	7601192	0	-	0.37	(0.35,0.378]	chr22	778566	697	INTRON	INTRON	MIR3667HG	ENSG00000188511.13	ENST00000414287.5:ENST00000416411.1	lncRNA	lncRNA	lncRNA	lncRNA	3	50	2	1.98929	2.5203249999999997	3.05136	0.0417909	0.00578894	0.147075	0.0684334
chr15	84775088	84775188	6088586	0	+	0.48	(0.476,0.515]	chr15	579441	99	INTRON	INTRON	ZNF592	ENSG00000166716.10	ENST00000560079.7	protein_coding	protein_coding	protein_coding	protein_coding	2	34	2	2.23335	2.52032	2.80729	0.0634557	0.0126008	0.177047	0.0980703
chr19	18849546	18849574	7033500	0	+	0.5	(0.476,0.515]	chr19	700990	1	SS5_PROX	SS5_PROX:INTRON	UPF1	ENSG00000005007.13	ENST00000262803.10:ENST00000599848.5:ENST00000601981.5:ENST00000594504.5:ENST00000600868.5:ENST00000600012.5:ENST00000598209.5:ENST00000600310.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	34	2	2.23335	2.52032	2.80729	0.0634557	0.0126008	0.177047	0.0980703
chr2	32404805	32404905	731262	0	+	0.49	(0.476,0.515]	chr2	84313	28	INTRON	INTRON	BIRC6	ENSG00000115760.15	ENST00000421745.7:ENST00000648282.1	protein_coding	protein_coding	protein_coding	protein_coding	2	34	2	2.23335	2.52032	2.80729	0.0634557	0.0126008	0.177047	0.0980703
chr2	62340715	62340815	790734	0	+	0.51	(0.476,0.515]	chr2	88708	429	INTRON	INTRON	ENSG00000228541	ENSG00000228541.2	ENST00000688476.1:ENST00000689590.1:ENST00000687402.1:ENST00000687773.1	lncRNA	lncRNA	lncRNA	lncRNA	2	34	2	2.23335	2.52032	2.80729	0.0634557	0.0126008	0.177047	0.0980703
chr5	126781456	126781555	2479218	0	+	0.494949	(0.476,0.515]	chr5	236699	32	INTRON	INTRON	LMNB1	ENSG00000113368.12	ENST00000460265.5:ENST00000261366.10:ENST00000504788.5:ENST00000472034.5:ENST00000492190.5:ENST00000395354.1:ENST00000463908.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	34	2	2.23335	2.52032	2.80729	0.0634557	0.0126008	0.177047	0.0980703
chr7	132909269	132909369	3644155	0	-	0.49	(0.476,0.515]	chr7	338848	219	INTRON	INTRON	CHCHD3	ENSG00000106554.13	ENST00000262570.10:ENST00000448878.6:ENST00000496427.5:ENST00000423635.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	34	2	2.23335	2.52032	2.80729	0.0634557	0.0126008	0.177047	0.0980703
chr22	18567305	18567405	7551025	0	-	0.51	(0.476,0.515]	chr22	771829	144	INTRON	INTRON	PI4KAP1	ENSG00000274602.5	ENST00000612500.4:ENST00000611748.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	6	84	2	1.89682	2.520225	3.14363	0.0158424	4.25082e-4	0.101453	0.018441
chr21	34097651	34097750	7401335	0	+	0.353535	(0.35,0.378]	chr21	753974	4	UTR3	UTR3:EXON_MRNA:INTRON	MRPS6:SLC5A3	ENSG00000243927.6:ENSG00000198743.7	ENST00000488492.5:ENST00000477091.5:ENST00000399312.3:ENST00000381151.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	83	2	2.23651	2.5202	2.80389	0.020879	6.14024e-4	0.111766	0.0223951
chr14	96556913	96557011	5810743	0	+	0.428571	(0.408,0.44]	chr14	550973	1	INTRON	INTRON	PAPOLA	ENSG00000090060.19	ENST00000216277.13:ENST00000553689.5:ENST00000392990.6:ENST00000555626.5:ENST00000556459.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	47	2	2.43988	2.52018	2.60048	0.0398236	0.00484324	0.143072	0.0640618
chr2	127794770	127794870	1225721	0	-	0.42	(0.408,0.44]	chr2	130519	234	INTRON	INTRON	WDR33	ENSG00000136709.12	ENST00000322313.9:ENST00000436787.5:ENST00000393006.5:ENST00000409658.7:ENST00000408998.1	protein_coding	protein_coding	protein_coding	protein_coding	3	47	2	2.43988	2.52018	2.60048	0.0398236	0.00484324	0.143072	0.0640618
chr9	125139033	125139133	4351935	0	-	0.44	(0.408,0.44]	chr9	399530	726	INTRON	INTRON	SCAI	ENSG00000173611.18	ENST00000336505.11:ENST00000373549.8:ENST00000477186.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	47	2	2.43988	2.52018	2.60048	0.0398236	0.00484324	0.143072	0.0640618
chr8	129478346	129478446	4060058	0	-	0.48	(0.476,0.515]	chr8	369602	211	INTRON	INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1:ENST00000676273.1:ENST00000667643.1:ENST00000668791.1:ENST00000663716.1:ENST00000663572.1:ENST00000676148.1:ENST00000667962.1:ENST00000674877.1:ENST00000675316.1:ENST00000674656.1:ENST00000446592.7:ENST00000667341.1:ENST00000675186.1:ENST00000652971.1:ENST00000661447.1:ENST00000674863.1:ENST00000675498.1:ENST00000675527.1:ENST00000676108.1:ENST00000657647.1:ENST00000675589.1:ENST00000675913.1:ENST00000675109.1:ENST00000671632.1:ENST00000671311.1:ENST00000676099.1:ENST00000660652.1:ENST00000675522.1:ENST00000675183.1:ENST00000658861.1:ENST00000663991.1:ENST00000675044.1:ENST00000675435.1:ENST00000674639.1:ENST00000676069.1:ENST00000675532.1:ENST00000674762.1:ENST00000523151.6:ENST00000675948.1:ENST00000665364.1:ENST00000657251.1:ENST00000675166.1:ENST00000674883.1:ENST00000675867.1:ENST00000674580.1:ENST00000675393.1:ENST00000520048.1:ENST00000674906.1:ENST00000676030.1:ENST00000670588.1:ENST00000675072.1:ENST00000664936.1:ENST00000652914.1:ENST00000657069.1	lncRNA	lncRNA	lncRNA	lncRNA	7	104	2	2.48789	2.520125	2.55236	0.00256502	0.00104106	0.0466761	0.0293739
chr15	80060423	80060502	6071039	0	+	0.265823	[0,0.28]	chr15	578301	1	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	ZFAND6	ENSG00000086666.19	ENST00000613266.4:ENST00000561060.5:ENST00000559157.5:ENST00000261749.11:ENST00000561012.5:ENST00000564367.5:ENST00000558494.5:ENST00000618205.4:ENST00000560470.5	protein_coding	protein_coding	protein_coding	protein_coding	5	108	2	2.10718	2.52012	2.93306	0.0187468	0.00180892	0.108861	0.039365700000000003
chr6	157917858	157917957	3016722	0	+	0.40404	(0.378,0.408]	chr6	281411	75	INTRON	INTRON	SNX9	ENSG00000130340.17	ENST00000680863.1:ENST00000679814.1:ENST00000680464.1:ENST00000681186.1:ENST00000679732.1:ENST00000681183.1:ENST00000681534.1:ENST00000681651.1:ENST00000680089.1:ENST00000680078.1:ENST00000680974.1:ENST00000680095.1:ENST00000681138.1:ENST00000392185.8:ENST00000679790.1:ENST00000680495.1:ENST00000679691.1:ENST00000681881.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	77	2	2.43657	2.5201000000000002	2.60363	0.0106733	0.00153353	0.0861859	0.0361717
chr17	82916415	82916513	6695895	0	+	0.561224	(0.515,0.57]	chr17	655036	24	INTRON	INTRON	TBCD	ENSG00000141556.22	ENST00000682479.1:ENST00000682722.1:ENST00000684464.1:ENST00000684544.1:ENST00000681983.1:ENST00000684361.1:ENST00000683184.1:ENST00000683282.1:ENST00000684408.1:ENST00000355528.9:ENST00000683444.1:ENST00000684776.1:ENST00000683041.1:ENST00000684760.1:ENST00000684349.1:ENST00000682213.1:ENST00000539345.6:ENST00000684000.1:ENST00000684188.1:ENST00000684429.1:ENST00000682610.1:ENST00000683821.1:ENST00000682654.1:ENST00000576160.6:ENST00000571712.5:ENST00000576996.5:ENST00000683584.1:ENST00000682099.1:ENST00000684559.1:ENST00000576760.5:ENST00000683839.1:ENST00000574975.5:ENST00000572953.5:ENST00000571796.5:ENST00000682315.1:ENST00000574422.1:ENST00000576677.6:ENST00000571618.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	114	2	1.85278	2.520045	3.18731	0.00514125	7.269e-5	0.064995	0.00767614
chr15	41300937	41301037	6004558	0	+	0.48	(0.476,0.515]	chr15	571273	30	EXON_LNCRNA	EXON_LNCRNA:INTRON	OIP5-AS1	ENSG00000247556.6	ENST00000500949.6:ENST00000501665.2	lncRNA	lncRNA	lncRNA	lncRNA	26	320	2	1.95551	2.520035	3.08456	4.67352e-4	8.33318e-6	0.0195867	0.00219713
chr16	30299568	30299668	6473010	0	-	0.56	(0.515,0.57]	chr16	625692	3	SS5_PROX	SS5_PROX:INTRON	SMG1P5	ENSG00000183604.15	ENST00000529428.5:ENST00000411546.4:ENST00000691460.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	5	63	2	2.45375	2.5199949999999998	2.58624	0.00526399	0.00273605	0.0633874	0.0483437
chr11	67298181	67298279	4814196	0	+	0.5	(0.476,0.515]	chr11	448333	4	EXON_MRNA	EXON_MRNA:INTRON	ANKRD13D	ENSG00000172932.16	ENST00000511455.7:ENST00000308440.11:ENST00000447274.7:ENST00000506531.5:ENST00000504186.5:ENST00000508417.5:ENST00000512231.5:ENST00000513750.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	34	2	2.47949	2.5199100000000003	2.56033	0.0326974	0.0287634	0.145164	0.127066
chr16	24126573	24126673	6326677	0	+	0.48	(0.476,0.515]	chr16	605753	22	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1	protein_coding	protein_coding	protein_coding	protein_coding	2	34	2	2.47949	2.5199100000000003	2.56033	0.0326974	0.0287634	0.145164	0.127066
chr17	77340103	77340203	6680035	0	+	0.48	(0.476,0.515]	chr17	652501	159	INTRON	INTRON	SEPTIN9	ENSG00000184640.20	ENST00000589070.1:ENST00000591833.5:ENST00000591198.5:ENST00000427177.6:ENST00000590576.5:ENST00000431235.6:ENST00000449803.6:ENST00000587237.1:ENST00000329047.13:ENST00000588575.1:ENST00000590595.1:ENST00000590294.6:ENST00000591934.1:ENST00000588690.6:ENST00000592098.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	34	2	2.47949	2.5199100000000003	2.56033	0.0326974	0.0287634	0.145164	0.127066
chr2	26066872	26066972	713427	0	+	0.49	(0.476,0.515]	chr2	82440	242	INTRON	INTRON	RAB10	ENSG00000084733.11	ENST00000264710.5:ENST00000495146.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	34	2	2.47949	2.5199100000000003	2.56033	0.0326974	0.0287634	0.145164	0.127066
chr2	241133899	241133996	1347450	0	-	0.484536	(0.476,0.515]	chr2	141421	10	EXON_MRNA	EXON_MRNA:INTRON	PASK	ENSG00000115687.14	ENST00000234040.9:ENST00000544142.5:ENST00000405260.5:ENST00000358649.8:ENST00000403638.7:ENST00000493544.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	34	2	2.47949	2.5199100000000003	2.56033	0.0326974	0.0287634	0.145164	0.127066
chr7	100341623	100341721	3364393	0	+	0.479592	(0.476,0.515]	chr7	314641	4	INTRON	INTRON	STAG3L5P:STAG3L5P-PVRIG2P-PILRB	ENSG00000242294.6:ENSG00000272752.6	ENST00000473757.5:ENST00000470714.5:ENST00000310771.8:ENST00000483329.6:ENST00000444874.5:ENST00000488972.6:ENST00000493499.1	lncRNA	retained_intron	lncRNA:transcribed_unprocessed_pseudogene	retained_intron:lncRNA:processed_transcript	2	34	2	2.47949	2.5199100000000003	2.56033	0.0326974	0.0287634	0.145164	0.127066
chr8	125185394	125185494	3854427	0	+	0.48	(0.476,0.515]	chr8	355249	27	INTRON	INTRON	NSMCE2	ENSG00000156831.8	ENST00000517532.5:ENST00000287437.8:ENST00000522563.5:ENST00000517315.1	protein_coding	protein_coding	protein_coding	protein_coding	2	34	2	2.47949	2.5199100000000003	2.56033	0.0326974	0.0287634	0.145164	0.127066
chr7	87896376	87896473	3346880	0	+	0.28866000000000003	(0.28,0.32]	chr7	311870	3	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	DBF4	ENSG00000006634.8	ENST00000413643.5:ENST00000265728.6:ENST00000431138.5:ENST00000430279.5:ENST00000498144.5:ENST00000498726.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	130	2	2.08803	2.519875	2.95172	0.0103533	3.7205e-4	0.085045	0.0173669
chr17	47679074	47679168	6622900	0	+	0.404255	(0.378,0.408]	chr17	646108	8	EXON_MRNA	EXON_MRNA:INTRON	KPNB1	ENSG00000108424.11	ENST00000535458.6:ENST00000583648.6:ENST00000290158.9:ENST00000540627.5:ENST00000582097.5:ENST00000677341.1:ENST00000580573.2:ENST00000580158.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	77	2	2.2708	2.5198650000000002	2.76893	0.00646593	0.00316735	0.073179	0.0503085
chr20	49673294	49673394	7353222	0	-	0.53	(0.515,0.57]	chr20	749846	162	INTRON	INTRON	B4GALT5	ENSG00000158470.5	ENST00000371711.4	protein_coding	protein_coding	protein_coding	protein_coding	6	76	2	2.496	2.51986	2.54372	0.00225531	0.00205444	0.0436331	0.0409693
chr17	82256473	82256572	6852657	0	-	0.424242	(0.408,0.44]	chr17	679151	5	INTRON	INTRON	CSNK1D	ENSG00000141551.15	ENST00000398519.9:ENST00000314028.11:ENST00000581241.5:ENST00000392334.6:ENST00000403276.7:ENST00000582844.5:ENST00000580446.1:ENST00000581660.5:ENST00000578194.5:ENST00000579316.5:ENST00000584472.5:ENST00000580061.5:ENST00000585026.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	124	2	1.92413	2.51983	3.11553	0.00687924	1.01454e-4	0.0717484	0.00850967
chr1	161117151	161117251	573826	0	-	0.55	(0.515,0.57]	chr1	69586	144	INTRON	INTRON	PFDN2	ENSG00000143256.5	ENST00000468311.1:ENST00000368010.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	30	2	2.35125	2.51979	2.68833	0.0436431	0.0184931	0.162255	0.108861
chr3	49966797	49966897	1423223	0	+	0.53	(0.515,0.57]	chr3	149964	2	SS3_PROX	SS3_PROX:INTRON	RBM6	ENSG00000004534.15	ENST00000442092.5:ENST00000443081.5:ENST00000419610.5:ENST00000441115.5:ENST00000422955.5:ENST00000454079.5:ENST00000266022.9:ENST00000425608.5:ENST00000434592.5:ENST00000433811.1:ENST00000491874.5:ENST00000488807.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	30	2	2.35125	2.51979	2.68833	0.0436431	0.0184931	0.162255	0.108861
chr8	38902569	38902668	3737548	0	+	0.40404	(0.378,0.408]	chr8	347382	1	INTRON	INTRON	PLEKHA2	ENSG00000169499.15	ENST00000521746.5:ENST00000616927.4:ENST00000519640.5:ENST00000617275.5:ENST00000616834.1	protein_coding	protein_coding	protein_coding	protein_coding	3	48	2	1.76032	2.519695	3.27907	0.0721577	0.0023379	0.187433	0.0442989
chr6	57117269	57117368	2878331	0	+	0.343434	(0.32,0.35]	chr6	273249	77	INTRON	INTRON	ZNF451	ENSG00000112200.17	ENST00000515290.5:ENST00000510483.5:ENST00000357489.7:ENST00000370702.5:ENST00000444273.6:ENST00000370711.9:ENST00000370706.9:ENST00000491832.6:ENST00000502749.1:ENST00000504603.1:ENST00000509071.5:ENST00000509251.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	73	2	1.72405	2.5196899999999998	3.31533	0.0275418	0.00323121	0.137011	0.0507087
chr16	16538204	16538304	6311244	0	+	0.45	(0.44,0.476]	chr16	604098	382	INTRON	INTRON	ENSG00000260126	ENSG00000260126.2	ENST00000567465.2	lncRNA	lncRNA	lncRNA	lncRNA	14	200	2	2.46089	2.5196750000000003	2.57846	0.00025962100000000003	1.86806e-4	0.0148796	0.0119273
chr22	23191092	23191191	7483309	0	+	0.515152	(0.476,0.515]	chr22	763531	85	INTRON	INTRON	BCR	ENSG00000186716.21	ENST00000479188.5:ENST00000359540.7:ENST00000305877.13	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	87	2	2.31424	2.519655	2.72507	0.00308038	0.0029369	0.0496505	0.0496438
chr7	1569427	1569515	3462720	0	-	0.556818	(0.515,0.57]	chr7	323952	2	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PSMG3	ENSG00000157778.9	ENST00000288607.3:ENST00000404674.7:ENST00000252329.3	protein_coding	protein_coding	protein_coding	protein_coding	9	107	2	1.87376	2.51964	3.16552	0.00649501	8.25408e-5	0.0734388	0.00812487
chr21	32758679	32758779	7440342	0	-	0.27	[0,0.28]	chr21	759263	2	SS5_PROX	SS5_PROX:INTRON	PAXBP1	ENSG00000159086.15	ENST00000331923.9:ENST00000443785.5:ENST00000290178.4:ENST00000472588.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	119	2	1.53862	2.51947	3.50032	0.0254957	0.00245166	0.133676	0.0446188
chr21	43896177	43896276	7414100	0	+	0.434343	(0.408,0.44]	chr21	755692	132	INTRON	INTRON	AGPAT3	ENSG00000160216.21	ENST00000291572.13:ENST00000448287.5:ENST00000398061.5	protein_coding	protein_coding	protein_coding	protein_coding	3	47	2	1.93243	2.51942	3.10641	0.0441194	0.00555646	0.162255	0.0648867
chr3	15837092	15837192	1624218	0	-	0.34	(0.32,0.35]	chr3	168034	224	INTRON	INTRON	ANKRD28	ENSG00000206560.12	ENST00000399451.6:ENST00000412318.5:ENST00000439830.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	99	2	1.89094	2.519415	3.14789	0.0185636	5.00642e-4	0.108861	0.020217099999999998
chr2	112529591	112529691	851464	0	+	0.31	(0.28,0.32]	chr2	95416	9	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TTL	ENSG00000114999.8	ENST00000233336.7:ENST00000460450.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	75	2	2.17756	2.5193450000000004	2.86113	0.0130851	0.0122675	0.0969406	0.0934394
chr1	35303980	35304080	68641	0	+	0.38	(0.378,0.408]	chr1	8723	76	INTRON	INTRON	ZMYM4	ENSG00000146463.12	ENST00000314607.11:ENST00000441447.1	protein_coding	protein_coding	protein_coding	protein_coding	3	48	2	2.11194	2.519295	2.92665	0.0292534	0.0086017	0.128055	0.083729
chr22	36518462	36518562	7585711	0	-	0.38	(0.378,0.408]	chr22	776307	3	SS5_PROX	SS5_PROX:INTRON	EIF3D	ENSG00000100353.18	ENST00000216190.13:ENST00000405442.5:ENST00000458572.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	48	2	2.11194	2.519295	2.92665	0.0292534	0.0086017	0.128055	0.083729
chr17	47145174	47145273	6788935	0	-	0.444444	(0.44,0.476]	chr17	669573	8	INTRON	INTRON	CDC27	ENSG00000004897.12	ENST00000066544.8:ENST00000531206.5:ENST00000533415.5:ENST00000527547.5:ENST00000526866.5:ENST00000525495.6:ENST00000574304.5:ENST00000575830.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	126	2	2.47804	2.51914	2.56024	0.00325838	2.08065e-4	0.0508595	0.0125875
chr22	12606036	12606136	7472676	0	+	0.27	[0,0.28]	chr22	761880	9	INTRON	INTRON	FRG1GP	ENSG00000283023.1	ENST00000634617.1	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	3	67	2	2.44242	2.5190599999999996	2.5957	0.0491024	0.00656974	0.155269	0.0736092
chr7	12393778	12393878	3485340	0	-	0.3	(0.28,0.32]	chr7	325968	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	VWDE	ENSG00000146530.15	ENST00000275358.8:ENST00000452576.6:ENST00000521169.5:ENST00000326715.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	109	2	2.50162	2.51905	2.53648	0.00925866	0.0013622	0.0817766	0.0339121
chr7	72952795	72952825	3553784	0	-	0.2	[0,0.28]	chr7	330619	1	INTRON	INTRON	NSUN5P2	ENSG00000106133.18	ENST00000602348.5:ENST00000444583.6:ENST00000388955.8:ENST00000485741.6:ENST00000457352.4	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	7	138	2	1.66126	2.51905	3.37684	0.0332828	2.5121e-4	0.134145	0.0140934
chr6	147681238	147681337	2990808	0	+	0.353535	(0.35,0.378]	chr6	280163	47	INTRON	INTRON	ENSG00000227681	ENSG00000227681.5	ENST00000427015.1:ENST00000432506.5:ENST00000442094.5	lncRNA	lncRNA	lncRNA	lncRNA	4	60	2	2.20096	2.519025	2.83709	0.01435	0.0087123	0.0966737	0.0844834
chr17	37449564	37449664	6604063	0	+	0.37	(0.35,0.378]	chr17	642800	44	INTRON	INTRON	TADA2A	ENSG00000276234.5	ENST00000615182.5:ENST00000620628.4:ENST00000614122.4:ENST00000620367.4:ENST00000612272.4:ENST00000615328.4:ENST00000620086.4:ENST00000619777.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	67	2	2.4475	2.51898	2.59046	0.0106974	0.00528327	0.0862205	0.0656295
chr15	63546525	63546625	6042335	0	+	0.26	[0,0.28]	chr15	575406	14	INTRON	INTRON	USP3	ENSG00000140455.17	ENST00000540797.5:ENST00000380324.8:ENST00000561442.5:ENST00000560070.5:ENST00000557884.5:ENST00000558157.5:ENST00000561326.5:ENST00000559873.5:ENST00000559192.5:ENST00000559771.5:ENST00000268049.11:ENST00000558285.5:ENST00000559257.5:ENST00000538686.6:ENST00000559711.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	66	2	1.94204	2.518955	3.09587	0.0544139	0.00651565	0.164972	0.0735232
chr4	152496109	152496209	2274690	0	-	0.46	(0.44,0.476]	chr4	221124	63	INTRON	INTRON	FBXW7	ENSG00000109670.16	ENST00000281708.10:ENST00000603548.6:ENST00000604872.6:ENST00000647166.1:ENST00000643834.1:ENST00000642901.1	protein_coding	protein_coding	protein_coding	protein_coding	4	55	2	1.81595	2.518935	3.22192	0.0317953	0.00360821	0.14477	0.0533855
chr14	90803097	90803197	5951613	0	-	0.49	(0.476,0.515]	chr14	565050	164	INTRON	INTRON	TTC7B	ENSG00000165914.15	ENST00000328459.11:ENST00000553948.1	protein_coding	protein_coding	protein_coding	protein_coding	7	98	2	2.22708	2.51892	2.81076	0.00263694	0.00203568	0.0458452	0.0417667
chr22	16785507	16785607	7546254	0	-	0.34	(0.32,0.35]	chr22	771315	7	INTRON	INTRON	XKR3	ENSG00000172967.8	ENST00000331428.5:ENST00000684488.1	protein_coding	protein_coding	protein_coding	protein_coding	8	136	2	2.34962	2.518845	2.68807	0.00342953	4.78715e-4	0.0517761	0.0198328
chr7	16643826	16643925	3495010	0	-	0.484848	(0.476,0.515]	chr7	326342	70	INTRON	INTRON	ANKMY2	ENSG00000106524.9	ENST00000306999.7:ENST00000447802.3:ENST00000628652.1:ENST00000453623.5:ENST00000421746.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	74	2	2.41121	2.5188300000000003	2.62645	0.0110342	0.00135678	0.0873897	0.0339121
chr4	126726444	126726544	2237975	0	-	0.41	(0.408,0.44]	chr4	219029	278	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	8	118	2	2.2644	2.51881	2.77322	0.00768371	1.08448e-4	0.0753803	0.00880907
chr5	36896684	36896784	2338629	0	+	0.45	(0.44,0.476]	chr5	225949	103	INTRON	INTRON	NIPBL	ENSG00000164190.19	ENST00000282516.13:ENST00000448238.2:ENST00000652901.1	protein_coding	protein_coding	protein_coding	protein_coding	8	118	2	2.38634	2.518725	2.65111	0.0018045	6.64549e-4	0.039301	0.0234958
chr17	21615527	21615627	6578308	0	+	0.33	(0.32,0.35]	chr17	639543	6	INTRON	INTRON	ENSG00000260157	ENSG00000260157.3	ENST00000618784.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	3	53	2	2.4053	2.5187	2.6321	0.0268	0.0108284	0.123349	0.0920575
chr8	105321551	105321651	3837270	0	+	0.33	(0.32,0.35]	chr8	354033	14	INTRON	INTRON	ZFPM2	ENSG00000169946.14	ENST00000518180.1:ENST00000407775.7:ENST00000520492.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	53	2	2.4053	2.5187	2.6321	0.0268	0.0108284	0.123349	0.0920575
chr17	32145422	32145521	6596848	0	+	0.353535	(0.35,0.378]	chr17	641728	23	INTRON	INTRON	RHOT1	ENSG00000126858.19	ENST00000333942.10:ENST00000358365.7:ENST00000583994.5:ENST00000545287.7:ENST00000354266.7:ENST00000581031.5:ENST00000581094.5:ENST00000578205.5:ENST00000580976.1:ENST00000394692.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	60	2	1.82281	2.518685	3.21456	0.0316938	0.00420814	0.144635	0.0572185
chr6	15493833	15493933	2825430	0	+	0.34	(0.32,0.35]	chr6	265224	59	INTRON	INTRON	JARID2	ENSG00000008083.14	ENST00000341776.7:ENST00000397311.4	protein_coding	protein_coding	protein_coding	protein_coding	4	73	2	2.04237	2.5186599999999997	2.99495	0.0375542	0.00102621	0.140222	0.0294094
chr6	147343267	147343367	2990117	0	+	0.28	[0,0.28]	chr6	280116	35	INTRON	INTRON	STXBP5	ENSG00000164506.15	ENST00000321680.11:ENST00000367481.7:ENST00000367480.7:ENST00000367475.6:ENST00000392291.2	protein_coding	protein_coding	protein_coding	protein_coding	4	96	2	2.15457	2.5186349999999997	2.8827	0.0269306	0.00341901	0.135288	0.0517761
chr6	43770408	43770507	2872060	0	+	0.444444	(0.44,0.476]	chr6	272340	3	UTR5	UTR5:EXON_MRNA	VEGFA	ENSG00000112715.26	ENST00000476772.5:ENST00000672860.3:ENST00000372067.8:ENST00000425836.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	123	1492	2	2.27251	2.518625	2.76474	6.79712e-6	2.2979e-6	0.00185125	0.00105402
chr11	3385368	3385468	4722883	0	+	0.32	(0.28,0.32]	chr11	436985	4	SS5_PROX	SS5_PROX:INTRON	TSSC2	ENSG00000223756.8	ENST00000685598.1:ENST00000691197.1:ENST00000533775.6:ENST00000690471.1:ENST00000529482.5:ENST00000693396.1:ENST00000685130.1:ENST00000526284.5:ENST00000526488.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	13	208	2	1.81434	2.5185649999999997	3.22279	0.00666588	8.95937e-5	0.0704742	0.0079464
chrX	155927748	155927848	7741266	0	+	0.29	(0.28,0.32]	chrX	792648	75	INTRON	INTRON	VAMP7	ENSG00000124333.16	ENST00000286448.12:ENST00000479687.6:ENST00000488344.6:ENST00000463317.6:ENST00000262640.11:ENST00000460621.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	60	2	2.32871	2.51851	2.70831	0.0581621	0.00378444	0.167723	0.0562562
chr2	26050078	26050178	713259	0	+	0.37	(0.35,0.378]	chr2	82440	74	INTRON	INTRON	RAB10	ENSG00000084733.11	ENST00000264710.5:ENST00000495146.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	97	2	2.23309	2.51849	2.80389	0.00930277	6.14024e-4	0.0817766	0.0223951
chr6	143435066	143435163	3242210	0	-	0.402062	(0.378,0.408]	chr6	301144	7	INTRON	INTRON	ADAT2	ENSG00000189007.16	ENST00000237283.9:ENST00000606514.5	protein_coding	protein_coding	protein_coding	protein_coding	4	58	2	1.86598	2.518435	3.17089	0.0300232	0.00357279	0.129138	0.0548435
chr7	107580772	107580864	3378905	0	+	0.434783	(0.408,0.44]	chr7	316435	1	CDS_START	CDS_START:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	DUS4L-BCAP29:BCAP29	ENSG00000288558.2:ENSG00000075790.12	ENST00000673689.1:ENST00000673720.1:ENST00000673780.1:ENST00000673709.1:ENST00000673970.1:ENST00000674049.1:ENST00000673992.1:ENST00000673665.1:ENST00000674062.1:ENST00000673784.1:ENST00000673757.1:ENST00000005259.9:ENST00000465919.5:ENST00000486326.5:ENST00000466094.5:ENST00000494086.5:ENST00000482371.5:ENST00000445771.6:ENST00000442065.5:ENST00000479917.5:ENST00000421217.5:ENST00000457837.5:ENST00000379117.6:ENST00000473124.1:ENST00000379119.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	55	2	2.08376	2.51836	2.95296	0.0129886	0.00929354	0.0991656	0.0817766
chr5	32355195	32355289	2598410	0	-	0.37234	(0.35,0.378]	chr5	246861	10	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ZFR	ENSG00000056097.16	ENST00000265069.13:ENST00000514356.5:ENST00000502988.5:ENST00000510369.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	81	2	2.24196	2.5183400000000002	2.79472	0.00744693	0.00303911	0.0772645	0.0493883
chr6	111007239	111007338	2939557	0	+	0.282828	(0.28,0.32]	chr6	276871	71	INTRON	INTRON	RPF2	ENSG00000197498.13	ENST00000368864.8:ENST00000441448.7:ENST00000607388.1:ENST00000425871.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	58	2	1.81582	2.51828	3.22074	0.068122	0.00362783	0.184298	0.055479
chr3	197950691	197950759	1598729	0	+	0.411765	(0.408,0.44]	chr3	165694	3	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPL35A	ENSG00000182899.17	ENST00000647248.2:ENST00000448864.6:ENST00000485439.5:ENST00000642387.1:ENST00000642148.1:ENST00000329092.12:ENST00000496582.5:ENST00000429437.5:ENST00000442341.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	55	2	1.93002	2.518215	3.10641	0.022095	0.00555646	0.123903	0.0648867
chr16	23862132	23862232	6324020	0	+	0.42	(0.408,0.44]	chr16	605693	244	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000498058.1:ENST00000645517.1:ENST00000498739.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	71	2	1.31757	2.518155	3.71874	0.0705974	3.17998e-4	0.184528	0.0159645
chr17	67211812	67211911	6825491	0	-	0.474747	(0.44,0.476]	chr17	674529	80	INTRON	INTRON	HELZ	ENSG00000198265.12	ENST00000358691.10:ENST00000579953.5:ENST00000580168.5:ENST00000417253.7:ENST00000580662.5:ENST00000584641.5:ENST00000581159.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:non_stop_decay:nonsense_mediated_decay:processed_transcript	3	48	2	2.29842	2.518115	2.73781	0.0552483	0.00276493	0.165463	0.04867
chr15	84681631	84681731	6251679	0	-	0.32	(0.28,0.32]	chr15	596666	4	INTRON	INTRON	SEC11A	ENSG00000140612.14	ENST00000559729.5:ENST00000268220.12:ENST00000560266.5:ENST00000558134.5:ENST00000558217.5:ENST00000455959.7:ENST00000560409.5:ENST00000558196.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	58	2	2.00989	2.5181050000000003	3.02632	0.0427801	0.0071944	0.148082	0.0756118
chr15	85004933	85005033	6089161	0	+	0.3	(0.28,0.32]	chr15	579504	222	INTRON	INTRON	PDE8A	ENSG00000073417.15	ENST00000310298.8:ENST00000557957.5:ENST00000394553.6:ENST00000339708.9:ENST00000478717.5:ENST00000485596.5:ENST00000559742.5:ENST00000559086.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	58	2	2.00989	2.5181050000000003	3.02632	0.0427801	0.0071944	0.148082	0.0756118
chr16	71805986	71806085	6514449	0	-	0.292929	(0.28,0.32]	chr16	631208	162	INTRON	INTRON	AP1G1	ENSG00000166747.13	ENST00000299980.9:ENST00000569748.5:ENST00000393512.7:ENST00000565009.5:ENST00000568327.5:ENST00000450149.6:ENST00000563259.5:ENST00000563104.5:ENST00000569185.5:ENST00000566161.5:ENST00000567583.1:ENST00000565412.5:ENST00000569975.5:ENST00000570297.5:ENST00000570017.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	58	2	2.00989	2.5181050000000003	3.02632	0.0427801	0.0071944	0.148082	0.0756118
chr19	17060167	17060242	7150919	0	-	0.32	(0.28,0.32]	chr19	722521	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	HAUS8	ENSG00000131351.15	ENST00000253669.10:ENST00000448593.6:ENST00000593360.1:ENST00000598517.5:ENST00000601564.5:ENST00000595958.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	58	2	2.00989	2.5181050000000003	3.02632	0.0427801	0.0071944	0.148082	0.0756118
chr16	2069076	2069176	6277128	0	+	0.59	(0.57,1]	chr16	600043	3	SS5_PROX	SS5_PROX:INTRON	TSC2	ENSG00000103197.18	ENST00000643946.1:ENST00000643088.1:ENST00000382538.10:ENST00000644135.1:ENST00000219476.9:ENST00000642936.1:ENST00000401874.7:ENST00000644335.1:ENST00000646388.1:ENST00000643298.1:ENST00000439673.6:ENST00000350773.9:ENST00000439117.6:ENST00000644329.1:ENST00000642797.1:ENST00000644043.1:ENST00000642561.1:ENST00000568454.6:ENST00000644399.1:ENST00000646634.1:ENST00000644847.1:ENST00000568566.5:ENST00000642365.1:ENST00000488675.5:ENST00000562474.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	25	2	2.23711	2.518	2.79889	0.0172108	0.0110274	0.104099	0.0927187
chr16	85508486	85508586	6414915	0	+	0.68	(0.57,1]	chr16	615465	1492	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	3	25	2	2.23711	2.518	2.79889	0.0172108	0.0110274	0.104099	0.0927187
chr20	438196	438293	7302978	0	-	0.57732000000000006	(0.57,1]	chr20	743433	29	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	TBC1D20	ENSG00000125875.15	ENST00000680792.1:ENST00000354200.5:ENST00000461304.5:ENST00000681539.1:ENST00000679741.1:ENST00000680990.1:ENST00000681129.1:ENST00000681414.1:ENST00000681441.1:ENST00000680088.1:ENST00000680284.1:ENST00000681777.1:ENST00000681389.1:ENST00000679895.1:ENST00000680491.1:ENST00000679451.1:ENST00000679953.1:ENST00000461188.6:ENST00000680815.1:ENST00000680521.1:ENST00000681193.1:ENST00000681551.1:ENST00000679973.1:ENST00000680911.1:ENST00000679944.1:ENST00000681636.1:ENST00000680106.1:ENST00000494633.1:ENST00000680050.1:ENST00000681742.1:ENST00000680515.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	25	2	2.23711	2.518	2.79889	0.0172108	0.0110274	0.104099	0.0927187
chr2	47898600	47898700	1116045	0	-	0.33	(0.32,0.35]	chr2	119695	3	SS5_PROX	SS5_PROX:INTRON	FBXO11	ENSG00000138081.22	ENST00000684712.1:ENST00000682451.1:ENST00000403359.8:ENST00000683894.1:ENST00000681999.1:ENST00000682975.1:ENST00000684085.1:ENST00000492225.5:ENST00000424163.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	64	2	2.18777	2.517945	2.84812	0.0147575	0.00951422	0.0983813	0.0863913
chr21	44862623	44862722	7469013	0	-	0.353535	(0.35,0.378]	chr21	761242	8	INTRON	INTRON	PTTG1IP	ENSG00000183255.12	ENST00000397887.7:ENST00000445724.3:ENST00000330938.8:ENST00000474737.5:ENST00000494690.5:ENST00000480234.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	112	2	2.12264	2.517905	2.91317	0.0023865	0.00189062	0.0450097	0.0392053
chr8	116737986	116738086	4034054	0	-	0.42	(0.408,0.44]	chr8	368079	3	INTRON	INTRON	EIF3H	ENSG00000147677.12	ENST00000521861.6:ENST00000276682.8:ENST00000518949.5:ENST00000518995.5:ENST00000522800.5:ENST00000518034.5:ENST00000517974.1:ENST00000522453.1:ENST00000519046.5:ENST00000520813.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	85	2	1.84516	2.517905	3.19065	0.0193431	3.2984e-4	0.108861	0.0161352
chr17	30127923	30128023	6587500	0	+	0.51	(0.476,0.515]	chr17	640561	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:INTRON	NSRP1	ENSG00000126653.18	ENST00000540900.7:ENST00000584423.5:ENST00000612959.4:ENST00000247026.10:ENST00000577289.6:ENST00000584154.5:ENST00000394826.8:ENST00000479218.6:ENST00000475652.5:ENST00000584317.5:ENST00000583301.5:ENST00000585881.5:ENST00000467446.6:ENST00000580103.6:ENST00000581048.5:ENST00000588614.1:ENST00000589608.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	73	2	2.41328	2.51782	2.62236	0.00517	0.00355364	0.0631506	0.0547657
chr13	28191897	28191997	5461366	0	+	0.51	(0.476,0.515]	chr13	523255	136	INTRON	INTRON	PAN3	ENSG00000152520.14	ENST00000503791.5:ENST00000380958.8:ENST00000399613.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	73	2	2.37448	2.5178000000000003	2.66112	0.0044598	0.00419067	0.0592169	0.0591344
chr4	32009115	32009215	1941539	0	+	0.39	(0.378,0.408]	chr4	194727	109	INTRON	INTRON	LINC02506	ENSG00000251129.3	ENST00000662669.1:ENST00000665582.2:ENST00000667252.2:ENST00000660373.2:ENST00000684849.1:ENST00000513211.2:ENST00000659613.1:ENST00000657576.1:ENST00000686730.1:ENST00000685407.1:ENST00000685455.1:ENST00000655951.1	lncRNA	lncRNA	lncRNA	lncRNA	13	192	2	2.37259	2.517625	2.66266	6.6264e-4	1.18377e-4	0.0234815	0.00930884
chr1	65568385	65568484	138671	0	+	0.343434	(0.32,0.35]	chr1	15506	24	INTRON	INTRON	LEPR	ENSG00000116678.20	ENST00000371060.7:ENST00000371059.7:ENST00000349533.11:ENST00000616738.4:ENST00000344610.12:ENST00000462765.5:ENST00000371058.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	40	2	2.40308	2.51759	2.6321	0.0417732	0.0268	0.161736	0.123349
chr3	179574559	179574652	1567575	0	+	0.322581	(0.32,0.35]	chr3	162195	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	ACTL6A	ENSG00000136518.17	ENST00000450518.6:ENST00000392662.5:ENST00000468767.6:ENST00000429709.7:ENST00000494843.5:ENST00000487978.5:ENST00000486471.1:ENST00000467383.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	40	2	2.40308	2.51759	2.6321	0.0417732	0.0268	0.161736	0.123349
chr4	898857	898956	2093951	0	-	0.414141	(0.408,0.44]	chr4	206956	3	INTRON	INTRON	GAK	ENSG00000178950.18	ENST00000314167.9:ENST00000511163.5:ENST00000505819.5:ENST00000507580.5:ENST00000502656.5:ENST00000507991.1:ENST00000512325.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	63	2	1.92871	2.51756	3.10641	0.0127189	0.00555646	0.0986242	0.0648867
chr1	204554645	204554744	297815	0	+	0.434343	(0.408,0.44]	chr1	34331	51	UTR3	UTR3:EXON_MRNA	MDM4	ENSG00000198625.14	ENST00000367183.7:ENST00000391947.6:ENST00000454264.6:ENST00000612738.4:ENST00000614459.4:ENST00000616250.4:ENST00000367182.8	protein_coding	protein_coding	protein_coding	protein_coding	5	75	2	2.17784	2.517535	2.85723	0.00916282	0.00211413	0.0855292	0.0415897
chr2	47792615	47792714	777134	0	+	0.535354	(0.515,0.57]	chr2	87419	11	INTRON	INTRON	MSH6	ENSG00000116062.18	ENST00000652107.1:ENST00000445503.5:ENST00000614496.4:ENST00000456246.1:ENST00000234420.11:ENST00000673922.1:ENST00000673637.1:ENST00000540021.6:ENST00000455383.5:ENST00000538136.1:ENST00000420813.5:ENST00000411819.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	47	2	2.00468	2.517525	3.03037	0.0166344	0.00608732	0.110511	0.0676501
chr2	113725457	113725537	1216503	0	-	0.375	(0.35,0.378]	chr2	129479	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SLC35F5	ENSG00000115084.15	ENST00000245680.7:ENST00000409106.5:ENST00000459683.5:ENST00000470204.2:ENST00000447673.1:ENST00000485214.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	50	2	2.49643	2.5174950000000003	2.53856	0.0326077	0.00752974	0.133687	0.0773151
chr1	174877424	174877494	264328	0	+	0.557143	(0.515,0.57]	chr1	30906	1	UTR3	UTR3:UTR5:EXON_MRNA:INTRON	RABGAP1L	ENSG00000152061.24	ENST00000251507.8:ENST00000681986.1:ENST00000529145.6:ENST00000325589.9:ENST00000469553.6:ENST00000367687.5:ENST00000347255.6:ENST00000489615.5:ENST00000478442.5:ENST00000465412.5:ENST00000486220.5:ENST00000392064.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	47	2	1.94493	2.517475	3.09002	0.0204583	0.00491099	0.122204	0.0609494
chr19	21729388	21729488	7158916	0	-	0.39	(0.378,0.408]	chr19	723706	10	INTRON	INTRON	ZNF100	ENSG00000197020.12	ENST00000358296.11:ENST00000305570.10:ENST00000594401.1	protein_coding	protein_coding	protein_coding	protein_coding	4	66	2	1.94681	2.5174499999999997	3.08809	0.0457723	5.71831e-4	0.149888	0.0217398
chr1	179169473	179169573	592477	0	-	0.47	(0.44,0.476]	chr1	71074	265	INTRON	INTRON	ABL2	ENSG00000143322.21	ENST00000502732.6:ENST00000367623.8:ENST00000507173.5:ENST00000511413.5:ENST00000668691.1:ENST00000392043.4:ENST00000660584.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	35	2	2.29425	2.5174399999999997	2.74063	0.0518406	0.0176095	0.176696	0.105143
chr16	2066650	2066750	6277101	0	+	0.46	(0.44,0.476]	chr16	600036	2	SS5_PROX	SS5_PROX:INTRON	TSC2	ENSG00000103197.18	ENST00000643946.1:ENST00000643088.1:ENST00000382538.10:ENST00000644135.1:ENST00000219476.9:ENST00000642936.1:ENST00000401874.7:ENST00000644335.1:ENST00000646388.1:ENST00000643298.1:ENST00000439673.6:ENST00000350773.9:ENST00000439117.6:ENST00000644329.1:ENST00000642797.1:ENST00000644043.1:ENST00000642561.1:ENST00000568454.6:ENST00000644399.1:ENST00000646634.1:ENST00000644847.1:ENST00000568566.5:ENST00000642365.1:ENST00000488675.5:ENST00000562474.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	35	2	2.29425	2.5174399999999997	2.74063	0.0518406	0.0176095	0.176696	0.105143
chrX	16739621	16739720	7626013	0	+	0.474747	(0.44,0.476]	chrX	780887	30	INTRON	INTRON	SYAP1	ENSG00000169895.6	ENST00000380155.4	protein_coding	protein_coding	protein_coding	protein_coding	2	35	2	2.29425	2.5174399999999997	2.74063	0.0518406	0.0176095	0.176696	0.105143
chr6	132791856	132791955	3222761	0	-	0.414141	(0.408,0.44]	chr6	299650	6	INTRON	INTRON	SLC18B1	ENSG00000146409.12	ENST00000275227.9:ENST00000647932.1:ENST00000650278.1:ENST00000650136.1:ENST00000650298.1:ENST00000367918.1:ENST00000460518.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	65	2	2.19398	2.517375	2.84077	0.0132196	0.0043348	0.0940535	0.0600652
chr9	94439028	94439125	4162811	0	+	0.525773	(0.515,0.57]	chr9	379503	1	INTRON	INTRON	MFSD14B	ENSG00000148110.17	ENST00000375344.8	protein_coding	protein_coding	protein_coding	protein_coding	6	72	2	2.31394	2.51737	2.7208	0.00306828	0.00231716	0.0494933	0.0442594
chr11	27450732	27450832	4937202	0	-	0.47	(0.44,0.476]	chr11	462402	375	INTRON	INTRON	LGR4	ENSG00000205213.14	ENST00000379214.9:ENST00000389858.4:ENST00000480977.2	protein_coding	protein_coding	protein_coding	protein_coding	3	46	2	2.49823	2.517315	2.5364	0.0309324	0.00718224	0.13151	0.0756118
chr15	40180638	40180737	6001446	0	+	0.464646	(0.44,0.476]	chr15	570603	36	INTRON	INTRON	BUB1B	ENSG00000156970.13	ENST00000412359.7:ENST00000287598.11	protein_coding	protein_coding	protein_coding	protein_coding	3	46	2	2.49823	2.517315	2.5364	0.0309324	0.00718224	0.13151	0.0756118
chr9	5805121	5805217	4230945	0	-	0.354167	(0.35,0.378]	chr9	388927	2	CDS	CDS:UTR3:EXON_MRNA:SS5_PROX:INTRON	ERMP1	ENSG00000099219.15	ENST00000688202.1:ENST00000689364.1:ENST00000690284.1:ENST00000689268.1:ENST00000487088.6:ENST00000689030.1:ENST00000688887.1:ENST00000693487.1:ENST00000462592.5:ENST00000689671.1:ENST00000686418.1:ENST00000692974.1:ENST00000691560.1:ENST00000684950.1:ENST00000214893.10:ENST00000685462.1:ENST00000339450.10:ENST00000690648.1:ENST00000689742.1:ENST00000688899.1:ENST00000691251.1:ENST00000689259.1:ENST00000690037.1:ENST00000693638.1:ENST00000489219.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	62	2	2.43108	2.517245	2.60341	0.0275785	0.00345501	0.123904	0.0539802
chr17	27098912	27099012	6579814	0	+	0.26	[0,0.28]	chr17	639586	21	INTRON	INTRON	ENSG00000285822	ENSG00000285822.1	ENST00000649401.1	lncRNA	lncRNA	lncRNA	lncRNA	8	166	2	2.49162	2.516995	2.54237	0.00447054	9.9577e-4	0.0593175	0.0290732
chr16	30280342	30280442	6472801	0	-	0.36	(0.35,0.378]	chr16	625632	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SMG1P5	ENSG00000183604.15	ENST00000529428.5	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	3	50	2	2.04224	2.516985	2.99173	0.0363073	0.00713365	0.138959	0.0756118
chr1	218333588	218333687	317653	0	+	0.494949	(0.476,0.515]	chr1	36404	26	UTR3	UTR3:EXON_MRNA	RRP15	ENSG00000067533.6	ENST00000366932.4	protein_coding	protein_coding	protein_coding	protein_coding	4	55	2	1.74317	2.5169550000000003	3.29074	0.0396373	0.00272563	0.161534	0.0467523
chr6	31534606	31534701	3078763	0	-	0.6	(0.57,1]	chr6	286741	2	EXON_MRNA	EXON_MRNA:INTRON	DDX39B	ENSG00000198563.14	ENST00000458640.5:ENST00000462256.5:ENST00000376177.6:ENST00000484566.5:ENST00000396172.6:ENST00000482195.5:ENST00000431908.5:ENST00000481456.1:ENST00000427214.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	79	549	2	2.44093	2.516845	2.59276	4.30283e-7	1.21603e-7	3.43012e-4	1.67111e-4
chrX	48575744	48575821	7658510	0	+	0.649351	(0.57,1]	chrX	783796	2	EXON_LNCRNA	EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RBM3	ENSG00000102317.18	ENST00000472897.5:ENST00000376759.8:ENST00000488216.5:ENST00000466764.5:ENST00000490127.5:ENST00000489344.5:ENST00000491240.5:ENST00000485213.1:ENST00000376755.1:ENST00000491236.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	14	98	2	2.40511	2.516795	2.62848	1.62533e-4	7.6051e-5	0.0116628	0.00731806
chr2	69320666	69320765	1146620	0	-	0.555556	(0.515,0.57]	chr2	122417	10	UTR3	UTR3:EXON_MRNA	GFPT1	ENSG00000198380.13	ENST00000361060.5:ENST00000357308.9	protein_coding	protein_coding	protein_coding	protein_coding	12	115	2	1.9377	2.51675	3.0958	0.001519	5.63557e-4	0.0360297	0.0219303
chr1	212868370	212868468	309941	0	+	0.316327	(0.28,0.32]	chr1	35794	35	INTRON	INTRON	FLVCR1	ENSG00000162769.13	ENST00000366971.9:ENST00000419102.1:ENST00000579295.1:ENST00000474693.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	183	2	1.82841	2.51672	3.20503	0.00859355	9.8739e-5	0.0783933	0.00835981
chr7	127850021	127850121	3404392	0	+	0.34	(0.32,0.35]	chr7	318146	52	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000468166.5:ENST00000465900.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	54	2	2.4458	2.516665	2.58753	0.0425977	0.00560122	0.148082	0.0678837
chr7	129037656	129037756	3636408	0	-	0.5	(0.476,0.515]	chr7	338142	191	INTRON	INTRON	TNPO3	ENSG00000064419.14	ENST00000627585.2:ENST00000265388.10:ENST00000471234.5:ENST00000482320.5:ENST00000471166.1	protein_coding	protein_coding	protein_coding	protein_coding	6	93	2	1.88582	2.51665	3.14748	0.0273268	8.58189e-5	0.123904	0.00783027
chr22	21864322	21864422	7561353	0	-	0.48	(0.476,0.515]	chr22	773388	561	INTRON	INTRON	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	6	90	2	2.3346	2.5165699999999998	2.69854	0.00494807	0.00121528	0.0646039	0.031919
chr12	98521503	98521602	5198678	0	+	0.242424	[0,0.28]	chr12	491795	46	INTRON	INTRON	TMPO	ENSG00000120802.14	ENST00000548911.1:ENST00000556029.6:ENST00000343315.9:ENST00000266732.8:ENST00000393053.6:ENST00000546828.6:ENST00000261210.9:ENST00000549938.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	49	2	2.43761	2.516545	2.59548	0.0423864	0.0346067	0.161744	0.136649
chr14	73122201	73122301	5784741	0	+	0.27	[0,0.28]	chr14	547921	25	UTR3	UTR3:EXON_MRNA	RBM25	ENSG00000119707.14	ENST00000261973.12	protein_coding	protein_coding	protein_coding	protein_coding	2	49	2	2.43761	2.516545	2.59548	0.0423864	0.0346067	0.161744	0.136649
chr7	64813758	64813858	3320538	0	+	0.42	(0.408,0.44]	chr7	308704	3	SS3_PROX	SS3_PROX:INTRON	ZNF138	ENSG00000197008.10	ENST00000359735.7:ENST00000440155.6:ENST00000494380.5:ENST00000307355.12:ENST00000437743.1:ENST00000440598.2:ENST00000430838.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	46	2	2.44674	2.51649	2.58624	0.0273686	0.00868283	0.123904	0.0842798
chr20	32430150	32430247	7256548	0	+	0.319588	(0.28,0.32]	chr20	737088	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	ASXL1	ENSG00000171456.21	ENST00000651418.1:ENST00000375687.10:ENST00000613218.4:ENST00000620121.4:ENST00000646985.1:ENST00000306058.9:ENST00000647223.1:ENST00000619344.4:ENST00000555564.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	69	2	2.02902	2.5164850000000003	3.00395	0.0174423	0.0101329	0.11269	0.0850389
chr6	87549542	87549642	3152225	0	-	0.31	(0.28,0.32]	chr6	294041	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	RARS2	ENSG00000146282.19	ENST00000691533.1:ENST00000493269.2:ENST00000685069.1:ENST00000691725.1:ENST00000369536.10:ENST00000693431.1:ENST00000685408.1:ENST00000693327.1:ENST00000691205.1:ENST00000689174.1:ENST00000692684.1:ENST00000686988.1:ENST00000690622.1:ENST00000689206.1:ENST00000688532.1:ENST00000686154.1:ENST00000686407.1:ENST00000685701.1:ENST00000689561.1:ENST00000691238.1:ENST00000685336.1:ENST00000686284.1:ENST00000687586.1:ENST00000685376.1:ENST00000685881.1:ENST00000691815.1:ENST00000687090.1:ENST00000451155.2:ENST00000687437.1:ENST00000692394.1:ENST00000687729.1:ENST00000693605.1:ENST00000687909.1:ENST00000688391.1:ENST00000690884.1:ENST00000692843.1:ENST00000684790.1:ENST00000692270.1:ENST00000685219.1:ENST00000689952.1:ENST00000687579.1:ENST00000686857.1:ENST00000690205.1:ENST00000690705.1:ENST00000686142.1:ENST00000688106.1:ENST00000686196.1:ENST00000687078.1:ENST00000690555.1:ENST00000693524.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	69	2	2.02902	2.5164850000000003	3.00395	0.0174423	0.0101329	0.11269	0.0850389
chr3	14404145	14404244	1369407	0	+	0.373737	(0.35,0.378]	chr3	144308	9	INTRON	INTRON	SLC6A6	ENSG00000131389.18	ENST00000613060.4:ENST00000618278.4:ENST00000610642.4:ENST00000622810.4:ENST00000649500.1:ENST00000622186.5:ENST00000621751.4:ENST00000613930.4:ENST00000622176.4:ENST00000615188.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	62	2	1.58862	2.516485	3.44435	0.0615516	0.00179102	0.193423	0.0380316
chr22	12610123	12610223	7472717	0	+	0.43	(0.408,0.44]	chr22	761880	50	INTRON	INTRON	FRG1GP	ENSG00000283023.1	ENST00000634617.1	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	4	62	2	2.49983	2.51648	2.53313	0.00739595	0.00713527	0.0756118	0.074277
chrX	151973975	151974069	7908634	0	-	0.585106	(0.57,1]	chrX	804816	15	INTRON	INTRON	GABRE	ENSG00000102287.19	ENST00000370328.4:ENST00000441219.5:ENST00000417300.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	53	2	2.06823	2.51647	2.96471	0.00680672	1.58729e-4	0.0711884	0.0108333
chr6	157902644	157902743	3016564	0	+	0.414141	(0.408,0.44]	chr6	281399	2	INTRON	INTRON	SNX9	ENSG00000130340.17	ENST00000680863.1:ENST00000679814.1:ENST00000680464.1:ENST00000681186.1:ENST00000679732.1:ENST00000681183.1:ENST00000681534.1:ENST00000681651.1:ENST00000680089.1:ENST00000680078.1:ENST00000680974.1:ENST00000680095.1:ENST00000680015.1:ENST00000681138.1:ENST00000392185.8:ENST00000679790.1:ENST00000680495.1:ENST00000679691.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	117	2	2.18269	2.516395	2.8501	0.0055386	1.55358e-4	0.0648867	0.0106835
chr17	61789010	61789109	6808182	0	-	0.484848	(0.476,0.515]	chr17	672569	42	INTRON	INTRON	BRIP1	ENSG00000136492.10	ENST00000259008.7:ENST00000682755.1:ENST00000682453.1:ENST00000683039.1:ENST00000682989.1:ENST00000682589.1:ENST00000683235.1:ENST00000682477.1:ENST00000684584.1:ENST00000577598.5:ENST00000682066.1:ENST00000584322.2:ENST00000683381.1:ENST00000579028.2:ENST00000682611.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	87	2	1.78315	2.516375	3.2496	0.0215899	3.39435e-4	0.123836	0.0170719
chr1	52534786	52534886	458385	0	-	0.53	(0.515,0.57]	chr1	55100	4	SS5_PROX	SS5_PROX:INTRON	TUT4	ENSG00000134744.14	ENST00000371544.7:ENST00000257177.9:ENST00000528642.5:ENST00000484723.6:ENST00000473856.5:ENST00000355809.4:ENST00000470626.1:ENST00000524582.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	54	2	1.94248	2.51625	3.09002	0.0115668	0.00491099	0.0962115	0.0609494
chr18	8618443	8618543	6868310	0	+	0.37	(0.35,0.378]	chr18	680454	81	INTRON	INTRON	RAB12	ENSG00000206418.5	ENST00000649141.2	protein_coding	protein_coding	protein_coding	protein_coding	7	111	2	2.36666	2.51621	2.66576	0.00212276	0.00168985	0.0426185	0.037084
chr1	8692972	8693072	372535	0	-	0.3	(0.28,0.32]	chr1	43541	362	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000656437.1:ENST00000659924.1:ENST00000480342.5:ENST00000468247.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	43	2	2.46018	2.516065	2.57195	0.0375904	0.0331711	0.156054	0.133994
chr1	35880627	35880726	70611	0	+	0.40404	(0.378,0.408]	chr1	9024	104	INTRON	INTRON	AGO1	ENSG00000092847.13	ENST00000373206.5	protein_coding	protein_coding	protein_coding	protein_coding	2	36	2	2.36428	2.516065	2.66785	0.0441088	0.0224639	0.162255	0.11692
chr4	150731161	150731261	2268887	0	-	0.4	(0.378,0.408]	chr4	220726	471	INTRON	INTRON	LRBA	ENSG00000198589.14	ENST00000357115.9:ENST00000651943.2:ENST00000510413.5:ENST00000509835.5:ENST00000651695.1:ENST00000651035.1:ENST00000507224.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	36	2	2.36428	2.516065	2.66785	0.0441088	0.0224639	0.162255	0.11692
chr5	132625862	132625961	2487407	0	+	0.383838	(0.378,0.408]	chr5	237405	72	INTRON	INTRON	RAD50	ENSG00000113522.14	ENST00000533482.5:ENST00000378823.8:ENST00000651249.1:ENST00000455677.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	36	2	2.36428	2.516065	2.66785	0.0441088	0.0224639	0.162255	0.11692
chr6	4853302	4853402	2791632	0	+	0.4	(0.378,0.408]	chr6	263602	166	INTRON	INTRON	CDYL	ENSG00000153046.18	ENST00000328908.9:ENST00000491864.1:ENST00000440139.5:ENST00000483019.1:ENST00000397588.8:ENST00000472453.5:ENST00000449732.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	36	2	2.36428	2.516065	2.66785	0.0441088	0.0224639	0.162255	0.11692
chr8	129447929	129448028	4059752	0	-	0.282828	(0.28,0.32]	chr8	369596	38	INTRON	INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1:ENST00000676273.1:ENST00000667643.1:ENST00000668791.1:ENST00000663716.1:ENST00000663572.1:ENST00000676148.1:ENST00000667962.1:ENST00000674877.1:ENST00000675316.1:ENST00000674656.1:ENST00000446592.7:ENST00000667341.1:ENST00000675186.1:ENST00000652971.1:ENST00000661447.1:ENST00000674863.1:ENST00000675498.1:ENST00000675527.1:ENST00000676108.1:ENST00000657647.1:ENST00000675589.1:ENST00000675913.1:ENST00000675109.1:ENST00000671632.1:ENST00000671311.1:ENST00000676099.1:ENST00000660652.1:ENST00000675522.1:ENST00000675183.1:ENST00000658861.1:ENST00000663991.1:ENST00000675044.1:ENST00000675435.1:ENST00000674639.1:ENST00000676069.1:ENST00000675532.1:ENST00000674762.1:ENST00000523151.6:ENST00000675948.1:ENST00000665364.1:ENST00000657251.1:ENST00000675166.1:ENST00000674883.1:ENST00000675867.1:ENST00000674580.1:ENST00000675393.1:ENST00000520048.1:ENST00000674906.1:ENST00000676030.1:ENST00000670588.1:ENST00000675072.1:ENST00000664936.1:ENST00000652914.1:ENST00000657069.1	lncRNA	lncRNA	lncRNA	lncRNA	2	43	2	2.46018	2.516065	2.57195	0.0375904	0.0331711	0.156054	0.133994
chr16	88718087	88718181	6539488	0	-	0.457447	(0.44,0.476]	chr16	633839	4	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	PIEZO1	ENSG00000103335.22	ENST00000301015.14:ENST00000419505.5:ENST00000484567.6:ENST00000495568.7:ENST00000466823.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	143	2	2.37109	2.51606	2.66103	8.72523e-4	4.47456e-4	0.0270796	0.0191768
chr20	3989080	3989179	7309143	0	-	0.313131	(0.28,0.32]	chr20	744300	143	INTRON	INTRON	RNF24	ENSG00000101236.17	ENST00000336095.10:ENST00000358395.11:ENST00000545616.2	protein_coding	protein_coding	protein_coding	protein_coding	5	94	2	1.99988	2.51605	3.03222	0.0228757	9.72587e-4	0.118056	0.0287313
chr11	34070528	34070628	4767840	0	+	0.46	(0.44,0.476]	chr11	440959	68	INTRON	INTRON	CAPRIN1	ENSG00000135387.21	ENST00000341394.9:ENST00000528856.5:ENST00000389645.7:ENST00000534042.5:ENST00000534825.5:ENST00000532820.5:ENST00000530820.5:ENST00000529307.1:ENST00000526494.5:ENST00000532755.5:ENST00000533641.5:ENST00000530008.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	61	2	2.33899	2.51598	2.69297	0.0142027	0.00333494	0.0959987	0.0528877
chr1	211300182	211300281	306115	0	+	0.50505	(0.476,0.515]	chr1	35296	41	INTRON	INTRON	RCOR3	ENSG00000117625.14	ENST00000367006.8:ENST00000419091.7:ENST00000452621.6:ENST00000528926.5:ENST00000367005.8:ENST00000534460.5:ENST00000529763.5:ENST00000485186.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	63	2	1.63187	2.51595	3.40003	0.037661	0.00139193	0.14058	0.0341261
chr3	47854150	47854249	1685121	0	-	0.474747	(0.44,0.476]	chr3	172143	4	INTRON	INTRON	MAP4	ENSG00000047849.22	ENST00000429422.5:ENST00000683076.1:ENST00000395734.7:ENST00000426837.6:ENST00000360240.10:ENST00000420772.6:ENST00000335271.9	protein_coding	protein_coding	protein_coding	protein_coding	4	61	2	2.38519	2.51594	2.64669	0.012193	0.0040295	0.0910127	0.0578376
chr10	74324144	74324244	4457501	0	+	0.42	(0.408,0.44]	chr10	411559	90	INTRON	INTRON	ADK	ENSG00000156110.15	ENST00000672429.1:ENST00000539909.6:ENST00000286621.7:ENST00000673352.1:ENST00000673310.1:ENST00000672920.1:ENST00000672394.1:ENST00000372734.5:ENST00000673027.1:ENST00000541550.6:ENST00000672604.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	49	2	2.45003	2.51591	2.58179	0.024638	0.00990006	0.131869	0.0838372
chr7	111263798	111263898	3621120	0	-	0.39	(0.378,0.408]	chr7	337093	2999	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	57	2	2.18512	2.5158750000000003	2.84663	0.0133954	0.00902136	0.0946278	0.0851259
chr1	154232997	154233097	227651	0	+	0.46	(0.44,0.476]	chr1	26249	39	INTRON	INTRON	UBAP2L	ENSG00000143569.19	ENST00000343815.10:ENST00000271877.11:ENST00000613315.4:ENST00000441890.5:ENST00000412596.5:ENST00000368504.5:ENST00000428931.6:ENST00000437652.5:ENST00000456325.5:ENST00000361546.6	protein_coding	protein_coding	protein_coding	protein_coding	5	67	2	2.35576	2.51574	2.67572	0.0212064	0.00208591	0.113017	0.0424672
chr6	34381964	34382064	3084667	0	-	0.62	(0.57,1]	chr6	288633	396	INTRON	INTRON	NUDT3:RPS10-NUDT3	ENSG00000272325.2:ENSG00000270800.3	ENST00000607016.2:ENST00000639725.1:ENST00000639877.1:ENST00000605528.2	protein_coding	protein_coding	protein_coding	protein_coding	3	26	2	2.50742	2.5157350000000003	2.52405	0.0263139	0.00631173	0.133676	0.0687526
chr3	121491302	121491400	1797897	0	-	0.367347	(0.35,0.378]	chr3	180500	5	INTRON	INTRON	POLQ	ENSG00000051341.15	ENST00000264233.6	protein_coding	protein_coding	protein_coding	protein_coding	5	70	2	1.71411	2.515735	3.31736	0.0310697	0.00211072	0.13151	0.0425419
chr7	26199665	26199760	3506230	0	-	0.431579	(0.408,0.44]	chr7	327192	6	UTR5	UTR5:EXON_MRNA:INTRON	HNRNPA2B1	ENSG00000122566.22	ENST00000679318.1:ENST00000677339.1:ENST00000678501.1:ENST00000676903.1:ENST00000608362.2:ENST00000677631.1:ENST00000676749.1:ENST00000677574.1:ENST00000679123.1:ENST00000677906.1:ENST00000476233.2:ENST00000677669.1:ENST00000677321.1:ENST00000678277.1:ENST00000677571.1:ENST00000679124.1:ENST00000676932.1:ENST00000678973.1:ENST00000678183.1:ENST00000679021.1:ENST00000678035.1:ENST00000677075.1:ENST00000678075.1:ENST00000678631.1:ENST00000678998.1:ENST00000490912.6:ENST00000354667.8:ENST00000618183.5:ENST00000677839.1:ENST00000677037.1:ENST00000678449.1:ENST00000679001.1:ENST00000678962.1:ENST00000676524.1:ENST00000678935.1:ENST00000678675.1:ENST00000676746.1:ENST00000356674.8:ENST00000678431.1:ENST00000678697.1:ENST00000678779.1:ENST00000676497.1:ENST00000677396.1:ENST00000360787.8:ENST00000679243.1:ENST00000677656.1:ENST00000463181.5:ENST00000678884.1:ENST00000495810.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	27	384	2	2.5044	2.515685	2.52697	4.867e-5	3.07034e-5	0.00605189	0.0044240700000000004
chr5	141592143	141592243	2739920	0	-	0.49	(0.476,0.515]	chr5	258168	35	INTRON	INTRON	DIAPH1	ENSG00000131504.18	ENST00000647433.1:ENST00000389054.8:ENST00000518047.5:ENST00000523100.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	63	2	1.53534	2.515605	3.49587	0.0476737	0.00120011	0.170116	0.0315806
chr6	143195991	143196091	2976544	0	+	0.5	(0.476,0.515]	chr6	279161	55	INTRON	INTRON	AIG1	ENSG00000146416.19	ENST00000367601.8:ENST00000447498.5:ENST00000646199.1:ENST00000357847.9:ENST00000275235.8:ENST00000458219.1	protein_coding	protein_coding	protein_coding	protein_coding	5	63	2	1.53534	2.515605	3.49587	0.0476737	0.00120011	0.170116	0.0315806
chr8	17992591	17992688	3708466	0	+	0.391753	(0.378,0.408]	chr8	343984	5	INTRON	INTRON	PCM1	ENSG00000078674.19	ENST00000325083.13:ENST00000519253.5:ENST00000524226.5:ENST00000522275.5	protein_coding	protein_coding	protein_coding	protein_coding	6	88	2	2.04798	2.515545	2.98311	0.00809949	0.0013103	0.0808864	0.0331539
chr19	38842143	38842235	7180758	0	-	0.369565	(0.35,0.378]	chr19	725865	6	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	HNRNPL	ENSG00000104824.18	ENST00000221419.10:ENST00000647557.1:ENST00000388749.7:ENST00000601449.5:ENST00000597731.1:ENST00000600873.5:ENST00000598985.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	19	282	2	2.20661	2.5155000000000003	2.82439	2.95414e-4	6.62773e-5	0.0153769	0.00717086
chr9	130748054	130748154	4214205	0	+	0.38	(0.378,0.408]	chr9	386427	332	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000393293.4	protein_coding	protein_coding	protein_coding	protein_coding	21	308	2	2.41359	2.51549	2.61739	8.95869e-5	7.15477e-5	0.0079464	0.00761173
chr1	99752999	99753099	515201	0	-	0.49	(0.476,0.515]	chr1	60409	36	INTRON	INTRON	FRRS1	ENSG00000156869.14	ENST00000646001.2:ENST00000287474.9:ENST00000370176.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	55	2	1.83961	2.5154	3.19119	0.0314489	0.00325748	0.13151	0.0524329
chr6	149648168	149648268	3246119	0	-	0.5	(0.476,0.515]	chr6	301603	3	SS5_PROX	SS5_PROX:INTRON	KATNA1	ENSG00000186625.14	ENST00000335643.12:ENST00000367411.7:ENST00000470620.1:ENST00000444282.5:ENST00000420200.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	55	2	1.83961	2.5154	3.19119	0.0314489	0.00325748	0.13151	0.0524329
chr7	140918668	140918768	3663673	0	-	0.3	(0.28,0.32]	chr7	340105	681	INTRON	INTRON	BRAF	ENSG00000157764.14	ENST00000496384.7:ENST00000644969.2:ENST00000646891.1:ENST00000644905.1:ENST00000642228.1:ENST00000288602.11:ENST00000646730.1:ENST00000497784.2:ENST00000642272.1:ENST00000642808.1:ENST00000643790.1:ENST00000469930.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	69	2	2.06884	2.5153549999999996	2.96187	0.0152581	0.0114995	0.108569	0.0889104
chr11	123061119	123061144	5047167	0	-	0.44	(0.408,0.44]	chr11	476153	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	HSPA8	ENSG00000109971.14	ENST00000453788.6:ENST00000533540.5:ENST00000534624.6:ENST00000532636.5:ENST00000227378.7:ENST00000526110.5:ENST00000533238.5:ENST00000527983.5:ENST00000528292.5:ENST00000532780.5:ENST00000525463.5:ENST00000532167.5:ENST00000525624.5:ENST00000534567.5:ENST00000527387.5:ENST00000532182.5:ENST00000524590.5:ENST00000530391.1:ENST00000531063.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	102	2	2.35743	2.51534	2.67325	0.00206746	0.00143252	0.0421756	0.0340925
chr12	56722656	56722755	5336204	0	-	0.484848	(0.476,0.515]	chr12	510231	8	INTRON	INTRON	NACA:ENSG00000285625	ENSG00000196531.14:ENSG00000285625.1	ENST00000678066.1:ENST00000679092.1:ENST00000546862.6:ENST00000678416.1:ENST00000678047.1:ENST00000454682.6:ENST00000550952.6:ENST00000550920.6:ENST00000678376.1:ENST00000356769.7:ENST00000393891.8:ENST00000552540.5:ENST00000548563.5:ENST00000546392.6:ENST00000547914.5:ENST00000549259.5:ENST00000551775.5:ENST00000552055.5:ENST00000549855.5:ENST00000551793.5:ENST00000551520.1:ENST00000548084.1:ENST00000647707.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	13	178	2	2.23879	2.515225	2.79166	5.83195e-4	1.5271e-4	0.0219397	0.0112857
chr15	84716024	84716075	6252028	0	-	0.529412	(0.515,0.57]	chr15	596692	1	CDS_START	CDS_START:CDS:UTR5:EXON_MRNA	SEC11A	ENSG00000140612.14	ENST00000559729.5:ENST00000268220.12:ENST00000560266.5:ENST00000558134.5:ENST00000558217.5:ENST00000455959.7:ENST00000560409.5:ENST00000558196.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	105	2	2.0031	2.515215	3.02733	0.00357298	1.80662e-4	0.0548435	0.0121878
chr19	1217175	1217268	6994308	0	+	0.419355	(0.408,0.44]	chr19	692897	4	INTRON	INTRON	STK11	ENSG00000118046.17	ENST00000585748.2:ENST00000326873.12:ENST00000652231.1:ENST00000593219.5:ENST00000589152.5:ENST00000585851.1:ENST00000586358.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	46	2	1.94273	2.5150550000000003	3.08738	0.0456237	0.00478231	0.149888	0.0636201
chr3	138812137	138812237	1831274	0	-	0.42	(0.408,0.44]	chr3	184062	152	INTRON	INTRON	PIK3CB	ENSG00000051382.9	ENST00000674063.1:ENST00000477593.5:ENST00000462898.5:ENST00000483968.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	46	2	1.94273	2.5150550000000003	3.08738	0.0456237	0.00478231	0.149888	0.0636201
chr15	59675523	59675622	6194649	0	-	0.535354	(0.515,0.57]	chr15	590213	24	INTRON	INTRON	BNIP2	ENSG00000140299.13	ENST00000267859.8:ENST00000607373.6:ENST00000612191.4:ENST00000439052.5:ENST00000415213.7:ENST00000448414.5:ENST00000464390.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	47	2	1.88259	2.514945	3.1473	0.0251849	0.00397184	0.133519	0.0549214
chr12	51163711	51163811	5325781	0	-	0.34	(0.32,0.35]	chr12	507890	382	INTRON	INTRON	TFCP2	ENSG00000135457.11	ENST00000257915.10:ENST00000685804.1:ENST00000549867.5:ENST00000548115.5:ENST00000548108.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	102	2	1.84365	2.5148800000000002	3.18611	0.0184323	6.68157e-4	0.116493	0.0235847
chr17	46167140	46167240	6784611	0	-	0.27	[0,0.28]	chr17	669232	99	INTRON	INTRON	KANSL1	ENSG00000120071.15	ENST00000574590.6:ENST00000572904.6:ENST00000432791.7:ENST00000575318.6:ENST00000638275.1:ENST00000262419.10:ENST00000648792.1:ENST00000639531.1:ENST00000639150.1:ENST00000639853.1:ENST00000571698.2:ENST00000639375.1:ENST00000638269.1:ENST00000576248.2:ENST00000639356.1:ENST00000574655.6:ENST00000639099.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	101	2	1.50357	2.514755	3.52594	0.0436989	0.00224145	0.162255	0.0423923
chr14	74890252	74890352	5789864	0	+	0.48	(0.476,0.515]	chr14	548579	3	SS5_PROX	SS5_PROX:INTRON	DLST	ENSG00000119689.15	ENST00000556460.5:ENST00000555492.5:ENST00000554612.5:ENST00000334220.9:ENST00000238671.11:ENST00000556582.5:ENST00000555071.5:ENST00000555190.5:ENST00000555459.5:ENST00000555089.5:ENST00000626051.1:ENST00000554806.5:ENST00000555988.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	73	2	2.48789	2.51473	2.54157	0.00697457	0.00256502	0.0718189	0.0466761
chr2	169603641	169603694	906664	0	+	0.377358	(0.35,0.378]	chr2	100024	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	PPIG	ENSG00000138398.17	ENST00000678088.1:ENST00000677392.1:ENST00000433207.6:ENST00000679324.1:ENST00000414307.6:ENST00000676508.1:ENST00000260970.8:ENST00000678695.1:ENST00000409714.7:ENST00000530152.5:ENST00000677750.1:ENST00000676557.1:ENST00000678721.1:ENST00000462903.6:ENST00000676756.1:ENST00000679107.1:ENST00000678499.1:ENST00000678638.1:ENST00000448752.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	68	2	1.90041	2.51473	3.12905	0.0145936	0.00566312	0.105992	0.0653997
chr15	92909626	92909725	6103786	0	+	0.545455	(0.515,0.57]	chr15	581401	6	INTRON	INTRON	ENSG00000279765:CHD2	ENSG00000279765.3:ENSG00000173575.22	ENST00000629685.2:ENST00000630790.1:ENST00000626874.2:ENST00000394196.9:ENST00000635856.1:ENST00000420239.7:ENST00000628375.2:ENST00000625990.3:ENST00000626782.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	74	2	1.88214	2.51472	3.1473	0.00447641	0.00397184	0.0610799	0.0549214
chr6	147213463	147213563	2988798	0	+	0.38	(0.378,0.408]	chr6	280001	70	INTRON	INTRON	STXBP5	ENSG00000164506.15	ENST00000321680.11:ENST00000367481.7:ENST00000546097.5:ENST00000367480.7	protein_coding	protein_coding	protein_coding	protein_coding	9	128	2	1.9515	2.51467	3.07784	0.00641948	1.31892e-4	0.0695904	0.00990163
chr1	110372413	110372511	182676	0	+	0.346939	(0.32,0.35]	chr1	20258	24	EXON_LNCRNA	EXON_LNCRNA:INTRON	LAMTOR5-AS1:ENSG00000273373	ENSG00000224699.10:ENSG00000273373.1	ENST00000626572.2:ENST00000609909.1	lncRNA	lncRNA	lncRNA	lncRNA	5	87	2	2.3471	2.51457	2.68204	0.0156413	0.00120582	0.101393	0.0320487
chr1	167977910	167978010	248905	0	+	0.3	(0.28,0.32]	chr1	29564	25	INTRON	INTRON	DCAF6	ENSG00000143164.16	ENST00000450548.5:ENST00000470919.5:ENST00000432587.6:ENST00000367843.7:ENST00000470721.5:ENST00000367840.4:ENST00000312263.10:ENST00000455334.5:ENST00000491067.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	58	2	2.51426	2.51457	2.51488	0.0380957	0.00781326	0.141678	0.0788246
chr7	127909407	127909507	3404991	0	+	0.33	(0.32,0.35]	chr7	318161	42	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000465900.5:ENST00000486037.1:ENST00000484767.5:ENST00000492840.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	87	2	2.3471	2.51457	2.68204	0.0156413	0.00120582	0.101393	0.0320487
chr16	10402688	10402788	6286444	0	+	0.46	(0.44,0.476]	chr16	601961	98	INTRON	INTRON	ATF7IP2	ENSG00000166669.14	ENST00000564797.5:ENST00000396559.5:ENST00000396560.6:ENST00000562527.5:ENST00000561932.5:ENST00000543967.5:ENST00000562102.6:ENST00000535850.5:ENST00000569900.5:ENST00000569939.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	94	2	2.28367	2.514565	2.74546	0.00326603	0.00160306	0.0508595	0.0367961
chr5	72883732	72883829	2387813	0	+	0.494845	(0.476,0.515]	chr5	230432	1	INTRON	INTRON	TNPO1	ENSG00000083312.19	ENST00000680533.1:ENST00000337273.10:ENST00000680025.1:ENST00000523768.5:ENST00000681711.1:ENST00000679378.1:ENST00000506351.6:ENST00000505082.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	62	2	1.78315	2.514555	3.24596	0.0215899	0.00322919	0.123836	0.0507087
chrX	300806	300904	7605466	0	+	0.530612	(0.515,0.57]	chrX	779420	16	UTR3	UTR3:EXON_MRNA	PLCXD1	ENSG00000182378.15	ENST00000399012.6:ENST00000381657.8	protein_coding	protein_coding	protein_coding	protein_coding	11	121	2	1.90231	2.51454	3.12677	0.00351814	7.69212e-5	0.0526339	0.00735438
chr3	44779188	44779288	1412397	0	+	0.45	(0.44,0.476]	chr3	148169	6	INTRON	INTRON	KIF15	ENSG00000163808.17	ENST00000438321.5:ENST00000326047.9:ENST00000481166.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	61	2	2.29126	2.514535	2.73781	0.0165638	0.00276493	0.102621	0.04867
chr1	20743318	20743417	389414	0	-	0.373737	(0.35,0.378]	chr1	46510	32	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	HP1BP3	ENSG00000127483.19	ENST00000438032.6:ENST00000312239.10:ENST00000375003.6:ENST00000488722.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	33	490	2	2.29597	2.514525	2.73308	5.68975e-5	2.36642e-5	0.00616917	0.00397981
chr10	72709939	72710037	4450264	0	+	0.418367	(0.408,0.44]	chr10	410733	12	INTRON	INTRON	MCU	ENSG00000156026.15	ENST00000373053.8:ENST00000357157.10:ENST00000604679.5:ENST00000604372.5:ENST00000603649.5:ENST00000605597.5:ENST00000536019.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	55	2	1.8749	2.51452	3.15414	0.0264246	0.00469847	0.133676	0.0600108
chr20	47355929	47356020	7349511	0	-	0.417582	(0.408,0.44]	chr20	749370	4	SS3_PROX	SS3_PROX:SS5_PROX:INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000458360.6:ENST00000262975.8:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000435836.5	protein_coding	protein_coding	protein_coding	protein_coding	4	55	2	1.8749	2.51452	3.15414	0.0264246	0.00469847	0.133676	0.0600108
chr16	74367312	74367405	6523541	0	-	0.430108	(0.408,0.44]	chr16	631627	4	EXON_MRNA	EXON_MRNA:INTRON	PDPR2P	ENSG00000214331.8	ENST00000566802.5:ENST00000429810.2:ENST00000568371.1	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron	8	115	2	2.26135	2.5145150000000003	2.76768	0.00236769	6.71664e-4	0.0437837	0.0235155
chr22	31619330	31619424	7578480	0	-	0.446809	(0.44,0.476]	chr22	775532	10	UTR3	UTR3:EXON_MRNA	PISD	ENSG00000241878.12	ENST00000460723.5:ENST00000439502.7:ENST00000382151.6:ENST00000437808.5:ENST00000266095.9:ENST00000473770.5:ENST00000397500.5:ENST00000435900.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	46	2	1.77101	2.51451	3.25801	0.0693975	0.00248185	0.184298	0.0460771
chr3	6541014	6541114	1356651	0	+	0.58	(0.57,1]	chr3	142508	279	INTRON	INTRON	ENSG00000189229	ENSG00000189229.12	ENST00000660158.1:ENST00000433639.1:ENST00000655754.1:ENST00000653839.1:ENST00000662846.1:ENST00000659876.1:ENST00000414438.2:ENST00000658468.1:ENST00000414603.1:ENST00000669512.1:ENST00000667028.1:ENST00000655541.1:ENST00000668643.1:ENST00000671568.1:ENST00000671036.1:ENST00000669798.1:ENST00000655753.1:ENST00000655856.1:ENST00000658398.1:ENST00000661518.1:ENST00000661279.1:ENST00000655495.1:ENST00000663041.1:ENST00000659827.1:ENST00000667716.1:ENST00000662508.1:ENST00000668416.1:ENST00000658133.1:ENST00000659651.1:ENST00000342990.4:ENST00000660054.1:ENST00000671370.1	lncRNA	lncRNA	lncRNA	lncRNA	5	34	2	1.46969	2.5144450000000003	3.5592	0.0586892	4.21089e-4	0.167915	0.0183576
chr17	63770780	63770880	6811956	0	-	0.46	(0.44,0.476]	chr17	673194	42	INTRON	INTRON	CCDC47	ENSG00000108588.15	ENST00000225726.10:ENST00000403162.7:ENST00000582252.1:ENST00000584112.1:ENST00000580986.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	61	2	2.42996	2.51442	2.59888	0.0104804	0.00487719	0.0855777	0.0640618
chr16	16515513	16515613	6311017	0	+	0.52	(0.515,0.57]	chr16	604098	155	INTRON	INTRON	ENSG00000260126	ENSG00000260126.2	ENST00000567465.2	lncRNA	lncRNA	lncRNA	lncRNA	13	136	2	1.82353	2.5144	3.20527	0.00333348	4.73488e-5	0.0512081	0.00562068
chr19	1588529	1588627	7112482	0	-	0.520408	(0.515,0.57]	chr19	714541	23	INTRON	INTRON	MBD3:ENSG00000267059	ENSG00000071655.18:ENSG00000267059.2	ENST00000434436.8:ENST00000156825.5:ENST00000585937.1:ENST00000585967.5:ENST00000592965.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	44	2	2.35125	2.51429	2.67733	0.0436431	0.00366712	0.162255	0.0535094
chr1	15939520	15939614	35599	0	+	0.648936	(0.57,1]	chr1	4337	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	SPEN	ENSG00000065526.12	ENST00000375759.8:ENST00000487496.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	19	2	2.36411	2.514245	2.66438	0.0408868	0.0171563	0.161534	0.104099
chr1	16954036	16954129	38467	0	+	0.612903	(0.57,1]	chr1	4553	7	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	CROCC	ENSG00000058453.17	ENST00000375541.10:ENST00000445545.6:ENST00000467938.5:ENST00000494191.6:ENST00000497654.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	19	2	2.36411	2.514245	2.66438	0.0408868	0.0171563	0.161534	0.104099
chr10	1130716	1130814	4380161	0	+	0.581633	(0.57,1]	chr10	404001	15	UTR3	UTR3:EXON_MRNA	WDR37	ENSG00000047056.17	ENST00000358220.5:ENST00000263150.9:ENST00000650072.1	protein_coding	protein_coding	protein_coding	protein_coding	2	19	2	2.36411	2.514245	2.66438	0.0408868	0.0171563	0.161534	0.104099
chr10	125060826	125060926	4713337	0	-	0.64	(0.57,1]	chr10	434897	213	INTRON	INTRON	CTBP2	ENSG00000175029.17	ENST00000337195.9:ENST00000411419.6:ENST00000494626.6:ENST00000531469.5:ENST00000460976.5:ENST00000476817.1:ENST00000530884.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	19	2	2.36411	2.514245	2.66438	0.0408868	0.0171563	0.161534	0.104099
chr16	16019718	16019818	6308463	0	+	0.58	(0.57,1]	chr16	603534	27	INTRON	INTRON	ABCC1	ENSG00000103222.20	ENST00000574224.2:ENST00000678422.1:ENST00000677164.1:ENST00000399408.7:ENST00000572882.3:ENST00000399410.8:ENST00000679043.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	19	2	2.36411	2.514245	2.66438	0.0408868	0.0171563	0.161534	0.104099
chr22	19095379	19095479	7551744	0	-	0.58	(0.57,1]	chr22	771903	55	INTRON	INTRON	DGCR2	ENSG00000070413.20	ENST00000537045.5:ENST00000545799.5:ENST00000263196.12:ENST00000389262.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	19	2	2.36411	2.514245	2.66438	0.0408868	0.0171563	0.161534	0.104099
chr7	151516494	151516593	3674892	0	-	0.606061	(0.57,1]	chr7	341207	180	INTRON	INTRON	RHEB	ENSG00000106615.10	ENST00000262187.10:ENST00000472642.5:ENST00000478470.5:ENST00000496004.5:ENST00000470370.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	19	2	2.36411	2.514245	2.66438	0.0408868	0.0171563	0.161534	0.104099
chrX	40096535	40096612	7804840	0	-	0.636364	(0.57,1]	chrX	795804	2	UTR5	UTR5:EXON_MRNA:INTRON	BCOR	ENSG00000183337.18	ENST00000378455.8:ENST00000397354.7:ENST00000342274.8:ENST00000615339.2:ENST00000680831.1:ENST00000378444.9:ENST00000672922.2:ENST00000673391.1:ENST00000406200.4:ENST00000412952.1	protein_coding	protein_coding	protein_coding	protein_coding	2	19	2	2.36411	2.514245	2.66438	0.0408868	0.0171563	0.161534	0.104099
chr16	75035364	75035463	6389782	0	+	0.444444	(0.44,0.476]	chr16	614482	326	INTRON	INTRON	ZNRF1	ENSG00000186187.12	ENST00000335325.9:ENST00000320619.10:ENST00000567962.5:ENST00000566250.5:ENST00000564320.1:ENST00000568511.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	34	2	2.20949	2.514225	2.81896	0.0672585	0.0120766	0.183051	0.0962311
chr4	42063720	42063819	1956486	0	+	0.444444	(0.44,0.476]	chr4	195973	2	INTRON	INTRON	SLC30A9	ENSG00000014824.14	ENST00000513699.5:ENST00000264451.12:ENST00000509683.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	34	2	2.20949	2.514225	2.81896	0.0672585	0.0120766	0.183051	0.0962311
chr5	38943565	38943660	2604292	0	-	0.473684	(0.44,0.476]	chr5	247711	2	INTRON	INTRON	RICTOR	ENSG00000164327.13	ENST00000357387.8:ENST00000511516.5:ENST00000296782.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	34	2	2.20949	2.514225	2.81896	0.0672585	0.0120766	0.183051	0.0962311
chrX	47636174	47636267	7814562	0	-	0.451613	(0.44,0.476]	chrX	796450	8	UTR3	UTR3:EXON_MRNA	ELK1	ENSG00000126767.18	ENST00000376983.8:ENST00000247161.7	protein_coding	protein_coding	protein_coding	protein_coding	2	34	2	2.20949	2.514225	2.81896	0.0672585	0.0120766	0.183051	0.0962311
chr11	12987473	12987565	4916054	0	-	0.445652	(0.44,0.476]	chr11	460682	10	INTRON	INTRON	LINC00958	ENSG00000251381.8	ENST00000658243.1:ENST00000527945.2:ENST00000671253.1:ENST00000653758.1:ENST00000662291.1:ENST00000671577.1:ENST00000663902.1:ENST00000653958.1:ENST00000526388.2:ENST00000504230.2:ENST00000531402.6:ENST00000534477.6:ENST00000532541.6:ENST00000653981.1	lncRNA	lncRNA	lncRNA	lncRNA	6	89	2	2.46422	2.5142249999999997	2.56423	0.00282908	0.00226303	0.0491595	0.0425438
chr11	33136512	33136612	4940725	0	-	0.27	[0,0.28]	chr11	462863	3	SS3_PROX	SS3_PROX:INTRON	CSTF3	ENSG00000176102.13	ENST00000323959.9:ENST00000524827.6:ENST00000526480.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	108	2	2.25796	2.514215	2.77047	0.00871258	0.00505301	0.0844834	0.0621733
chr1	6582991	6583087	5342	0	+	0.489583	(0.476,0.515]	chr1	1034	3	INTRON	INTRON	ZBTB48	ENSG00000204859.13	ENST00000377674.9:ENST00000488936.1	protein_coding	protein_coding	protein_coding	protein_coding	6	84	2	2.06011	2.514175	2.96824	0.00869033	9.98194e-4	0.0788605	0.0290732
chr3	69748157	69748256	1448455	0	+	0.292929	(0.28,0.32]	chr3	152745	81	INTRON	INTRON	MITF	ENSG00000187098.18	ENST00000687384.1:ENST00000693031.1:ENST00000352241.9:ENST00000461511.1:ENST00000642352.1:ENST00000495741.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	107	2	2.23291	2.51416	2.79541	0.00444008	0.00376367	0.0610799	0.0539127
chr18	12952700	12952798	6876204	0	+	0.44898	(0.44,0.476]	chr18	681277	4	INTRON	INTRON	SEH1L	ENSG00000085415.16	ENST00000592170.5:ENST00000262124.15:ENST00000399892.7:ENST00000585730.5:ENST00000589446.5:ENST00000587761.1:ENST00000588251.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	46	2	2.13779	2.5141299999999998	2.89047	0.0264596	0.00955699	0.122506	0.0863913
chr7	105299872	105299971	3603014	0	-	0.30303	(0.28,0.32]	chr7	336154	12	INTRON	INTRON	SRPK2	ENSG00000135250.17	ENST00000393651.8:ENST00000482897.5:ENST00000460391.5:ENST00000462282.5:ENST00000465112.5:ENST00000482862.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	58	2	2.0243	2.514125	3.00395	0.0364967	0.0101329	0.153759	0.0850389
chr16	30195727	30195824	6337016	0	+	0.57732000000000006	(0.57,1]	chr16	607295	1	INTRON	INTRON	SLX1A	ENSG00000132207.18	ENST00000251303.11:ENST00000565081.1:ENST00000345535.8:ENST00000563995.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	89	2	2.28472	2.514085	2.74345	7.1544e-4	3.44745e-5	0.0244077	0.00495154
chr19	3440372	3440472	7000372	0	+	0.51	(0.476,0.515]	chr19	694202	48	INTRON	INTRON	NFIC	ENSG00000141905.19	ENST00000641145.1:ENST00000589123.5:ENST00000395111.7:ENST00000586919.5:ENST00000341919.7:ENST00000443272.3:ENST00000590282.5:ENST00000589537.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	56	2	2.01618	2.514075	3.01197	0.0180082	0.00633162	0.106756	0.0722266
chr14	102596524	102596624	5822572	0	+	0.39	(0.378,0.408]	chr14	552490	28	INTRON	INTRON	RCOR1	ENSG00000089902.10	ENST00000262241.7	protein_coding	protein_coding	protein_coding	protein_coding	7	105	2	2.43777	2.51401	2.59025	0.00217503	0.00144299	0.0417893	0.034834
chr10	63329496	63329596	4634025	0	-	0.31	(0.28,0.32]	chr10	426226	604	INTRON	INTRON	JMJD1C	ENSG00000171988.20	ENST00000399262.7:ENST00000633035.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	44	2	2.29724	2.514005	2.73077	0.0554156	0.0220748	0.18407	0.115395
chr16	18830769	18830869	6457076	0	-	0.32	(0.28,0.32]	chr16	622630	4	SS3_PROX	SS3_PROX:INTRON	SMG1	ENSG00000157106.18	ENST00000446231.7:ENST00000565324.5	protein_coding	protein_coding	protein_coding	protein_coding	2	44	2	2.29724	2.514005	2.73077	0.0554156	0.0220748	0.18407	0.115395
chr10	68607229	68607328	4441356	0	+	0.393939	(0.378,0.408]	chr10	409530	58	INTRON	INTRON	TET1	ENSG00000138336.9	ENST00000373644.5	protein_coding	protein_coding	protein_coding	protein_coding	3	47	2	2.29798	2.513955	2.72993	0.0188736	0.0147606	0.108861	0.106702
chr15	68167682	68167781	6057098	0	+	0.393939	(0.378,0.408]	chr15	576602	25	INTRON	INTRON	PIAS1	ENSG00000033800.14	ENST00000249636.11:ENST00000545237.1	protein_coding	protein_coding	protein_coding	protein_coding	3	47	2	2.29798	2.513955	2.72993	0.0188736	0.0147606	0.108861	0.106702
chr19	38306169	38306250	7180031	0	-	0.407407	(0.378,0.408]	chr19	725617	3	INTRON	INTRON	YIF1B	ENSG00000167645.17	ENST00000339413.11:ENST00000592694.5:ENST00000337679.12:ENST00000392124.7:ENST00000586319.5:ENST00000592246.5:ENST00000591784.5:ENST00000329420.12:ENST00000589151.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	47	2	2.29798	2.513955	2.72993	0.0188736	0.0147606	0.108861	0.106702
chr4	15674991	15675091	2115066	0	-	0.38	(0.378,0.408]	chr4	208898	147	INTRON	INTRON	FBXL5	ENSG00000118564.15	ENST00000510802.5:ENST00000507899.1:ENST00000515679.1:ENST00000514541.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	47	2	2.29798	2.513955	2.72993	0.0188736	0.0147606	0.108861	0.106702
chrY	11190385	11190485	7929916	0	-	0.38	(0.378,0.408]	chrY	807176	269	INTRON	INTRON	ENSG00000278212	ENSG00000278212.3	ENST00000652671.1:ENST00000651211.2:ENST00000687423.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	3	47	2	2.29798	2.513955	2.72993	0.0188736	0.0147606	0.108861	0.106702
chr20	41581636	41581736	7344177	0	-	0.39	(0.378,0.408]	chr20	748566	171	INTRON	INTRON	CHD6	ENSG00000124177.16	ENST00000373233.8:ENST00000373222.3:ENST00000482596.1:ENST00000440647.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	47	2	2.23831	2.513885	2.78946	0.0179575	0.0158859	0.114265	0.101453
chr10	68615322	68615421	4441437	0	+	0.424242	(0.408,0.44]	chr10	409530	139	INTRON	INTRON	TET1	ENSG00000138336.9	ENST00000373644.5	protein_coding	protein_coding	protein_coding	protein_coding	3	46	2	1.88062	2.51384	3.14706	0.0534548	0.00382411	0.162935	0.0562562
chr6	33401113	33401213	2847036	0	+	0.42	(0.408,0.44]	chr6	268663	2	INTRON	INTRON	KIFC1	ENSG00000237649.8	ENST00000428849.7:ENST00000450504.1:ENST00000486695.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	46	2	1.88062	2.51384	3.14706	0.0534548	0.00382411	0.162935	0.0562562
chr11	28128958	28129057	4752364	0	+	0.323232	(0.32,0.35]	chr11	440090	32	INTRON	INTRON	METTL15	ENSG00000169519.21	ENST00000406787.7:ENST00000451385.6:ENST00000407364.8:ENST00000532947.2:ENST00000634627.1:ENST00000634973.1:ENST00000303459.10:ENST00000634721.1:ENST00000634762.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	86	2	2.06533	2.5138249999999998	2.96232	0.0174225	0.00118924	0.10453	0.031662
chr17	36528502	36528602	6759587	0	-	0.43	(0.408,0.44]	chr17	664579	3	SS3_PROX	SS3_PROX:INTRON	MYO19	ENSG00000278259.5	ENST00000614623.5:ENST00000610992.4:ENST00000621550.4:ENST00000610930.4:ENST00000621344.4:ENST00000620640.4:ENST00000616159.4:ENST00000622055.4:ENST00000616207.4:ENST00000613551.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	48	2	2.36185	2.51382	2.66579	0.019342	0.0133164	0.119831	0.094512
chr14	76206847	76206947	5796531	0	+	0.28	[0,0.28]	chr14	549192	51	UTR3	UTR3:EXON_MRNA:INTRON	GPATCH2L	ENSG00000089916.18	ENST00000261530.12:ENST00000621494.1:ENST00000556675.2:ENST00000556372.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	66	2	2.02265	2.513815	3.00498	0.0449017	0.00876063	0.149888	0.0846118
chr1	227066365	227066464	649175	0	-	0.343434	(0.32,0.35]	chr1	76984	66	INTRON	INTRON	CDC42BPA	ENSG00000143776.20	ENST00000366766.8:ENST00000366769.7:ENST00000334218.9:ENST00000366767.7:ENST00000448940.5:ENST00000442054.5:ENST00000366764.8:ENST00000441725.1:ENST00000684580.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	11	183	2	2.48574	2.51381	2.54188	0.00112443	3.02201e-4	0.0306963	0.0155054
chr20	63206197	63206297	7362681	0	-	0.5	(0.476,0.515]	chr20	751230	20	INTRON	INTRON	YTHDF1	ENSG00000149658.18	ENST00000370339.8:ENST00000370334.4	protein_coding	protein_coding	protein_coding	protein_coding	5	62	2	1.73688	2.51381	3.29074	0.0252731	0.00272563	0.133676	0.0467523
chr21	34104973	34105072	7401409	0	+	0.333333	(0.32,0.35]	chr21	753974	78	UTR3	UTR3:EXON_MRNA:INTRON	MRPS6:SLC5A3	ENSG00000243927.6:ENSG00000198743.7	ENST00000488492.5:ENST00000477091.5:ENST00000399312.3:ENST00000381151.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	145	2	2.44201	2.51377	2.58553	0.00263388	5.20021e-4	0.045806	0.0204523
chr1	154181704	154181802	558476	0	-	0.510204	(0.476,0.515]	chr1	66272	37	INTRON	INTRON	TPM3	ENSG00000143549.21	ENST00000611659.4:ENST00000368533.8:ENST00000469717.5:ENST00000330188.13:ENST00000341485.10:ENST00000341372.8:ENST00000328159.9:ENST00000509409.5:ENST00000651873.1:ENST00000271850.11:ENST00000368531.6:ENST00000323144.12:ENST00000651641.1:ENST00000368530.7:ENST00000509601.1:ENST00000651644.1:ENST00000368527.7:ENST00000473036.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	61	2	2.21677	2.5137650000000002	2.81076	0.0207026	0.00203568	0.110999	0.0417667
chr1	185081856	185081956	275922	0	+	0.45	(0.44,0.476]	chr1	32263	352	INTRON	INTRON	RNF2	ENSG00000121481.11	ENST00000367509.8:ENST00000498201.1:ENST00000367510.8:ENST00000453650.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	34	2	2.49112	2.51376	2.5364	0.0315968	0.0309324	0.144381	0.13151
chr1	246555178	246555277	680874	0	-	0.464646	(0.44,0.476]	chr1	79810	35	INTRON	INTRON	TFB2M	ENSG00000162851.8	ENST00000366514.5	protein_coding	protein_coding	protein_coding	protein_coding	2	34	2	2.49112	2.51376	2.5364	0.0315968	0.0309324	0.144381	0.13151
chr14	64387118	64387214	5909375	0	-	0.458333	(0.44,0.476]	chr14	561280	9	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	TEX21P	ENSG00000234911.3	ENST00000641479.1:ENST00000689962.1:ENST00000688414.1	transcribed_unitary_pseudogene	processed_transcript	transcribed_unitary_pseudogene	processed_transcript	2	34	2	2.49112	2.51376	2.5364	0.0315968	0.0309324	0.144381	0.13151
chr15	28169090	28169187	6122460	0	-	0.443299	(0.44,0.476]	chr15	583081	1	SS5_PROX	SS5_PROX:INTRON	HERC2	ENSG00000128731.18	ENST00000261609.13:ENST00000650509.1:ENST00000569772.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	34	2	2.49112	2.51376	2.5364	0.0315968	0.0309324	0.144381	0.13151
chr6	43004748	43004847	2868164	0	+	0.454545	(0.44,0.476]	chr6	271466	147	INTRON	INTRON	PPP2R5D	ENSG00000112640.16	ENST00000394110.7:ENST00000472118.5:ENST00000485511.6:ENST00000230402.10:ENST00000461010.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	34	2	2.49112	2.51376	2.5364	0.0315968	0.0309324	0.144381	0.13151
chr8	100927335	100927435	4005721	0	-	0.47	(0.44,0.476]	chr8	366658	19	INTRON	INTRON	YWHAZ	ENSG00000164924.18	ENST00000395958.6:ENST00000395957.6:ENST00000457309.2:ENST00000395956.7:ENST00000353245.7:ENST00000521309.5:ENST00000522542.5:ENST00000522819.5:ENST00000395953.6:ENST00000395948.6:ENST00000395951.7:ENST00000419477.6:ENST00000521607.5:ENST00000480304.5:ENST00000518736.5:ENST00000517727.5:ENST00000521328.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	34	2	2.49112	2.51376	2.5364	0.0315968	0.0309324	0.144381	0.13151
chr7	140344915	140345015	3660731	0	-	0.44	(0.408,0.44]	chr7	339791	3	SS5_PROX	SS5_PROX:INTRON	SLC37A3	ENSG00000157800.18	ENST00000477571.5:ENST00000326232.14:ENST00000447932.6:ENST00000340308.7:ENST00000498469.5:ENST00000491357.5:ENST00000492027.5:ENST00000477006.1:ENST00000460560.5:ENST00000485734.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	56	2	2.30838	2.513745	2.71911	0.0189489	0.00547703	0.108861	0.0671198
chr16	16506516	16506616	6310927	0	+	0.37	(0.35,0.378]	chr16	604098	65	INTRON	INTRON	ENSG00000260126	ENSG00000260126.2	ENST00000567465.2	lncRNA	lncRNA	lncRNA	lncRNA	2	38	2	2.30249	2.51373	2.72497	0.0519726	0.0198266	0.176696	0.109608
chr1	16622615	16622709	383593	0	-	0.5	(0.476,0.515]	chr1	45168	1	INTRON	INTRON	CROCCP2	ENSG00000215908.10	ENST00000639481.1:ENST00000639594.1:ENST00000640476.1:ENST00000639456.1:ENST00000412962.4	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	8	116	2	2.43435	2.513695	2.59304	0.00158794	9.94276e-4	0.0367961	0.0288906
chr1	227253363	227253463	651068	0	-	0.48	(0.476,0.515]	chr1	77102	336	INTRON	INTRON	CDC42BPA	ENSG00000143776.20	ENST00000366766.8:ENST00000366769.7:ENST00000334218.9:ENST00000366767.7:ENST00000366764.8:ENST00000478573.6:ENST00000682551.1:ENST00000462553.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	116	2	2.43435	2.513695	2.59304	0.00158794	9.94276e-4	0.0367961	0.0288906
chr2	38600694	38600790	1099758	0	-	0.479167	(0.476,0.515]	chr2	117962	8	INTRON	INTRON	HNRNPLL	ENSG00000143889.16	ENST00000449105.8:ENST00000409636.5:ENST00000358367.8:ENST00000608859.5:ENST00000378915.7:ENST00000409328.5:ENST00000410076.5:ENST00000498516.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	160	2	1.86012	2.51361	3.1671	0.00510771	2.2846e-5	0.0626805	0.00373083
chr17	78207109	78207208	6682159	0	+	0.626263	(0.57,1]	chr17	652736	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	AFMID	ENSG00000183077.16	ENST00000409257.10:ENST00000327898.9:ENST00000591952.5:ENST00000588800.5:ENST00000588199.5:ENST00000587750.5:ENST00000589664.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	27	2	2.36411	2.51358	2.66305	0.0408868	0.00327879	0.161534	0.0509077
chr15	92923721	92923820	6103929	0	+	0.525253	(0.515,0.57]	chr15	581409	19	INTRON	INTRON	ENSG00000279765:CHD2	ENSG00000279765.3:ENSG00000173575.22	ENST00000629685.2:ENST00000630790.1:ENST00000626874.2:ENST00000394196.9:ENST00000635856.1:ENST00000420239.7:ENST00000628375.2:ENST00000625990.3:ENST00000626782.2:ENST00000629136.1:ENST00000636861.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	87	2	1.98329	2.51352	3.04375	0.0105419	1.26526e-4	0.0860389	0.00962985
chr10	50330214	50330314	4617740	0	-	0.46	(0.44,0.476]	chr10	425400	25	INTRON	INTRON	SGMS1	ENSG00000198964.14	ENST00000429490.5:ENST00000361781.7:ENST00000602619.1:ENST00000361543.3:ENST00000626236.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	95	2	2.00922	2.5135199999999998	3.01782	0.0068301	7.8136e-4	0.0713163	0.0257169
chr17	82633118	82633217	6853539	0	-	0.464646	(0.44,0.476]	chr17	679380	17	INTRON	INTRON	WDR45B	ENSG00000141580.16	ENST00000392325.9:ENST00000572583.5:ENST00000571835.5:ENST00000573616.5:ENST00000571817.5:ENST00000574828.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	64	2	1.9039	2.51344	3.12298	0.0501498	4.66209e-4	0.156383	0.0195589
chr11	28114699	28114798	4752217	0	+	0.464646	(0.44,0.476]	chr11	440072	7	INTRON	INTRON	METTL15	ENSG00000169519.21	ENST00000406787.7:ENST00000403099.5:ENST00000451385.6:ENST00000407364.8:ENST00000532947.2:ENST00000634627.1:ENST00000634973.1:ENST00000303459.10:ENST00000634721.1:ENST00000634762.1:ENST00000437814.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	55	2	1.71574	2.51342	3.3111	0.045256	0.0020006	0.149888	0.0412555
chr1	100117624	100117723	515705	0	-	0.323232	(0.32,0.35]	chr1	60466	68	INTRON	INTRON	SASS6	ENSG00000156876.10	ENST00000462159.1:ENST00000287482.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	100	2	2.4961	2.5133650000000003	2.53063	0.00967886	0.00105397	0.0828038	0.0299229
chr1	151208840	151208939	224972	0	+	0.535354	(0.515,0.57]	chr1	25634	93	INTRON	INTRON	PIP5K1A	ENSG00000143398.20	ENST00000447555.5:ENST00000349792.9:ENST00000368888.9:ENST00000409426.5:ENST00000368890.8:ENST00000441902.6:ENST00000424999.1:ENST00000454769.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	63	2	2.01978	2.513355	3.00693	0.0165522	7.26845e-4	0.102621	0.0245647
chr5	32153968	32154068	2597312	0	-	0.36	(0.35,0.378]	chr5	246744	97	INTRON	INTRON	GOLPH3	ENSG00000113384.14	ENST00000265070.7:ENST00000503610.5:ENST00000512668.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	70	2	1.87717	2.51332	3.14947	0.0555068	4.50721e-4	0.165463	0.0192381
chr21	36322793	36322893	7403713	0	+	0.35	(0.32,0.35]	chr21	754279	21	INTRON	INTRON	MORC3	ENSG00000159256.13	ENST00000492336.5:ENST00000400485.6:ENST00000487909.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	54	2	2.18092	2.513305	2.84569	0.0256608	0.0121137	0.120491	0.0962599
chr1	36292097	36292197	73615	0	+	0.43	(0.408,0.44]	chr1	9404	1	SS3_PROX	SS3_PROX:INTRON	THRAP3	ENSG00000054118.15	ENST00000469141.6:ENST00000648638.1:ENST00000354618.10:ENST00000466743.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	34	2	2.36073	2.51326	2.66579	0.0481658	0.019342	0.153019	0.119831
chr1	90996961	90997061	502277	0	-	0.42	(0.408,0.44]	chr1	59504	142	INTRON	INTRON	ZNF644	ENSG00000122482.22	ENST00000370440.5:ENST00000337393.10:ENST00000347275.9:ENST00000361321.5:ENST00000467231.5:ENST00000498303.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	34	2	2.36073	2.51326	2.66579	0.0481658	0.019342	0.153019	0.119831
chr19	45633730	45633821	7192771	0	-	0.43956	(0.408,0.44]	chr19	728354	2	INTRON	INTRON	EML2	ENSG00000125746.18	ENST00000589876.5:ENST00000587152.6:ENST00000245925.8:ENST00000586195.5:ENST00000588308.5:ENST00000536630.5:ENST00000399594.7:ENST00000588000.5:ENST00000588610.5:ENST00000586770.5:ENST00000587804.1:ENST00000588889.5:ENST00000591721.5:ENST00000593255.5:ENST00000590043.5:ENST00000590018.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	34	2	2.36073	2.51326	2.66579	0.0481658	0.019342	0.153019	0.119831
chr21	39180536	39180636	7464166	0	-	0.44	(0.408,0.44]	chr21	760339	1	SS3_PROX	SS3_PROX:INTRON	PSMG1	ENSG00000183527.12	ENST00000331573.8:ENST00000411828.5:ENST00000380900.2:ENST00000431628.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	34	2	2.36073	2.51326	2.66579	0.0481658	0.019342	0.153019	0.119831
chr5	139169159	139169259	2735168	0	-	0.43	(0.408,0.44]	chr5	257600	138	INTRON	INTRON	SIL1	ENSG00000120725.13	ENST00000394817.7:ENST00000265195.9:ENST00000509534.5:ENST00000508639.5:ENST00000507002.5:ENST00000505830.5:ENST00000504666.5:ENST00000509400.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	34	2	2.36073	2.51326	2.66579	0.0481658	0.019342	0.153019	0.119831
chr7	151467025	151467118	3674386	0	-	0.419355	(0.408,0.44]	chr7	341164	12	UTR3	UTR3:EXON_MRNA	RHEB	ENSG00000106615.10	ENST00000262187.10:ENST00000472642.5:ENST00000478470.5:ENST00000496004.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	34	2	2.36073	2.51326	2.66579	0.0481658	0.019342	0.153019	0.119831
chr9	100030053	100030153	4307954	0	-	0.42	(0.408,0.44]	chr9	395794	33	INTRON	INTRON	ERP44	ENSG00000023318.9	ENST00000262455.7:ENST00000685319.1:ENST00000691188.1:ENST00000687025.1:ENST00000687093.1:ENST00000690739.1:ENST00000687017.1:ENST00000690317.1:ENST00000691823.1:ENST00000686275.1:ENST00000689406.1:ENST00000684842.1:ENST00000688230.1:ENST00000685432.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	34	2	2.36073	2.51326	2.66579	0.0481658	0.019342	0.153019	0.119831
chr16	89483444	89483544	6543531	0	-	0.39	(0.378,0.408]	chr16	634281	518	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	14	203	2	2.48852	2.513245	2.53797	5.39879e-4	1.0143e-4	0.0215026	0.00850967
chr7	156885270	156885370	3687939	0	-	0.5	(0.476,0.515]	chr7	342096	480	INTRON	INTRON	LMBR1	ENSG00000105983.23	ENST00000353442.10:ENST00000415428.5:ENST00000454132.5:ENST00000434503.5:ENST00000430278.5:ENST00000434278.5:ENST00000444719.5:ENST00000461469.5:ENST00000414218.1:ENST00000434453.1:ENST00000498034.5:ENST00000433968.5:ENST00000485985.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	13	182	2	2.44068	2.513235	2.58579	2.72561e-4	2.65088e-4	0.0151394	0.0144158
chr16	70064570	70064670	6509709	0	-	0.38	(0.378,0.408]	chr16	630377	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	PDXDC2P-NPIPB14P:PDXDC2P	ENSG00000196696.13:ENSG00000255185.6	ENST00000531894.5:ENST00000530079.5:ENST00000529089.1:ENST00000534700.6:ENST00000533264.5:ENST00000534580.5:ENST00000527016.1:ENST00000525173.1	lncRNA	lncRNA	lncRNA:transcribed_unprocessed_pseudogene	lncRNA:processed_transcript:transcribed_unprocessed_pseudogene	3	48	2	1.97143	2.513225	3.05502	0.0398704	0.00689519	0.161534	0.0717484
chr11	61304435	61304535	4956190	0	-	0.38	(0.378,0.408]	chr11	465676	4	SS3_PROX	SS3_PROX:INTRON	DDB1	ENSG00000167986.15	ENST00000301764.12:ENST00000680367.1:ENST00000681803.1:ENST00000680717.1:ENST00000679712.1:ENST00000680357.1:ENST00000680075.1:ENST00000679588.1:ENST00000680602.1:ENST00000680881.1:ENST00000681188.1:ENST00000535283.6:ENST00000680452.1:ENST00000681935.1:ENST00000680250.1:ENST00000680959.1:ENST00000540166.5:ENST00000679855.1:ENST00000539332.2:ENST00000681368.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	65	2	1.9714	2.51321	3.05502	0.0109363	0.00689519	0.0924799	0.0717484
chr2	169620107	169620207	906840	0	+	0.4	(0.378,0.408]	chr2	100061	50	INTRON	INTRON	PPIG	ENSG00000138398.17	ENST00000678088.1:ENST00000677392.1:ENST00000433207.6:ENST00000679324.1:ENST00000414307.6:ENST00000676508.1:ENST00000260970.8:ENST00000678695.1:ENST00000409714.7:ENST00000530152.5:ENST00000677750.1:ENST00000678721.1:ENST00000462903.6:ENST00000676756.1:ENST00000679107.1:ENST00000678499.1:ENST00000678638.1:ENST00000448752.7:ENST00000417938.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	65	2	1.9714	2.51321	3.05502	0.0109363	0.00689519	0.0924799	0.0717484
chr13	95157905	95158004	5638420	0	-	0.535354	(0.515,0.57]	chr13	537060	91	INTRON	INTRON	ABCC4	ENSG00000125257.16	ENST00000645237.2:ENST00000643051.1:ENST00000643842.1:ENST00000646439.1:ENST00000643816.1:ENST00000536256.3:ENST00000643556.1:ENST00000629385.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	63	2	2.24433	2.513205	2.78208	0.00725078	0.00209264	0.072984	0.0424943
chr12	131739825	131739925	5249381	0	+	0.43	(0.408,0.44]	chr12	499173	110	INTRON	INTRON	SFSWAP	ENSG00000061936.10	ENST00000261674.9:ENST00000538548.5:ENST00000535236.5:ENST00000541286.5:ENST00000535202.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	63	2	1.6546400000000001	2.5131300000000003	3.37162	0.0329965	0.00208674	0.145298	0.0411801
chr14	103452879	103452978	5826316	0	+	0.363636	(0.35,0.378]	chr14	552855	5	INTRON	INTRON	MARK3	ENSG00000075413.19	ENST00000678179.1:ENST00000676838.1:ENST00000677348.1:ENST00000677404.1:ENST00000676694.1:ENST00000676938.1:ENST00000678619.1:ENST00000676897.1:ENST00000677214.1:ENST00000677942.1:ENST00000676830.1:ENST00000678999.1:ENST00000677228.1:ENST00000556744.2:ENST00000677104.1:ENST00000679330.1:ENST00000560417.6:ENST00000440884.7:ENST00000676475.1:ENST00000677035.1:ENST00000678022.1:ENST00000677560.1:ENST00000561314.6:ENST00000429436.7:ENST00000677118.1:ENST00000676564.1:ENST00000678169.1:ENST00000678175.1:ENST00000678897.1:ENST00000678278.1:ENST00000676645.1:ENST00000677829.1:ENST00000678302.1:ENST00000677133.1:ENST00000561164.2:ENST00000558223.6:ENST00000559328.6:ENST00000678207.1:ENST00000677360.1:ENST00000676905.1:ENST00000678343.1:ENST00000677347.1:ENST00000678071.1:ENST00000677432.1:ENST00000678237.1:ENST00000677604.1:ENST00000676518.1:ENST00000677051.1:ENST00000677857.1:ENST00000677869.1:ENST00000678423.1:ENST00000560603.6:ENST00000416682.6:ENST00000303622.13:ENST00000216288.11:ENST00000679105.1:ENST00000553942.5:ENST00000335102.9:ENST00000678091.1:ENST00000561071.5:ENST00000558698.5:ENST00000559268.5:ENST00000560731.5:ENST00000676745.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	37	2	2.1617	2.5131050000000004	2.86451	0.0771502	0.0109111	0.196285	0.0923273
chr9	108919449	108919549	4310641	0	-	0.36	(0.35,0.378]	chr9	396141	1	SS3_PROX	SS3_PROX:INTRON	ELP1	ENSG00000070061.16	ENST00000675765.1:ENST00000374647.10:ENST00000675078.1:ENST00000674948.1:ENST00000676121.1:ENST00000676429.1:ENST00000674704.1:ENST00000674938.1:ENST00000675602.1:ENST00000675215.1:ENST00000676044.1:ENST00000675979.1:ENST00000675325.1:ENST00000495759.6:ENST00000675893.1:ENST00000675943.1:ENST00000675535.1:ENST00000674890.1:ENST00000675233.1:ENST00000676086.1:ENST00000674836.1:ENST00000675406.1:ENST00000675748.1:ENST00000675400.1:ENST00000676237.1:ENST00000675825.1:ENST00000676424.1:ENST00000675647.1:ENST00000675877.1:ENST00000676416.1:ENST00000675052.1:ENST00000674535.1:ENST00000537196.1:ENST00000675566.1:ENST00000675507.1:ENST00000675727.1:ENST00000675711.1:ENST00000675458.1:ENST00000675335.1:ENST00000675321.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	37	2	2.1617	2.5131050000000004	2.86451	0.0771502	0.0109111	0.196285	0.0923273
chr20	47269420	47269520	7348628	0	-	0.33	(0.32,0.35]	chr20	749288	66	INTRON	INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000467200.6:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000468376.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	100	2	1.95408	2.513055	3.07203	0.0124054	0.00109373	0.0973643	0.0304174
chr17	82121523	82121622	6851507	0	-	0.535354	(0.515,0.57]	chr17	678956	74	INTRON	INTRON	CCDC57	ENSG00000176155.21	ENST00000694881.1:ENST00000389641.9:ENST00000694882.1:ENST00000665763.1:ENST00000578910.2:ENST00000392345.6:ENST00000583593.2:ENST00000419322.6:ENST00000392346.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	53	2	2.39351	2.5130049999999997	2.6325	0.0100431	0.00439001	0.0881096	0.0585064
chr19	46783596	46783696	7195372	0	-	0.46	(0.44,0.476]	chr19	728993	1	SS5_PROX	SS5_PROX:INTRON	SLC1A5	ENSG00000105281.12	ENST00000542575.6:ENST00000594991.5:ENST00000434726.6:ENST00000412532.6:ENST00000593713.1:ENST00000598022.1	protein_coding	protein_coding	protein_coding	protein_coding	6	88	2	2.38636	2.51299	2.63962	0.0047296	0.00126329	0.0600445	0.0329641
chr1	160326314	160326413	572146	0	-	0.474747	(0.44,0.476]	chr1	69355	2	INTRON	INTRON	COPA	ENSG00000122218.17	ENST00000241704.8:ENST00000696204.1:ENST00000696203.1:ENST00000649963.1:ENST00000696208.1:ENST00000696207.1:ENST00000649676.1:ENST00000368069.7:ENST00000647693.1:ENST00000649787.1:ENST00000650154.1:ENST00000647799.1:ENST00000648805.1:ENST00000647683.1:ENST00000649231.1:ENST00000648501.1:ENST00000696209.1:ENST00000696210.1:ENST00000696211.1:ENST00000647899.1:ENST00000696212.1:ENST00000696214.1:ENST00000696213.1:ENST00000696215.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	168	2	1.98093	2.51293	3.04493	0.00392739	1.94955e-5	0.0548259	0.00339846
chr17	32869212	32869311	6757037	0	-	0.353535	(0.35,0.378]	chr17	664079	63	INTRON	INTRON	MYO1D	ENSG00000176658.17	ENST00000318217.10:ENST00000579584.5:ENST00000583621.1	protein_coding	protein_coding	protein_coding	protein_coding	7	84	2	1.28976	2.512925	3.73609	0.0648731	3.31057e-4	0.179414	0.0161599
chr2	235540235	235540335	1041799	0	+	0.5	(0.476,0.515]	chr2	111222	153	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1:ENST00000402604.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	142	2	2.07345	2.5129149999999996	2.95238	0.00282986	1.32392e-4	0.0491645	0.0104812
chr7	105348758	105348858	3603504	0	-	0.21	[0,0.28]	chr7	336161	418	INTRON	INTRON	SRPK2	ENSG00000135250.17	ENST00000393651.8:ENST00000482897.5:ENST00000460391.5:ENST00000462282.5:ENST00000465112.5:ENST00000482862.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	89	2	2.20642	2.51286	2.8193	0.0280845	0.00285248	0.125065	0.0494641
chr14	105242704	105242803	5973765	0	-	0.343434	(0.32,0.35]	chr14	568020	2	INTRON	INTRON	BRF1	ENSG00000185024.18	ENST00000547530.7:ENST00000379937.6:ENST00000392557.8:ENST00000446501.6:ENST00000551787.5:ENST00000619151.4:ENST00000327359.7:ENST00000440513.7:ENST00000552127.5:ENST00000546417.5:ENST00000550208.1:ENST00000550375.1	protein_coding	protein_coding	protein_coding	protein_coding	3	53	2	2.45306	2.512845	2.57263	0.0312297	0.00916394	0.13151	0.0855292
chr2	111461615	111461714	1211468	0	-	0.40404	(0.378,0.408]	chr2	128909	139	INTRON	INTRON	MIR4435-2HG	ENSG00000172965.17	ENST00000645030.2:ENST00000642191.1:ENST00000673798.1:ENST00000645051.2:ENST00000673649.1:ENST00000669658.1:ENST00000669917.1:ENST00000661559.1:ENST00000653687.1:ENST00000667670.1:ENST00000609220.2:ENST00000656760.1:ENST00000609902.6:ENST00000666683.1:ENST00000674070.1:ENST00000662335.1:ENST00000664422.1:ENST00000673775.1:ENST00000674092.1:ENST00000673958.1:ENST00000658936.1:ENST00000662635.1:ENST00000666204.1:ENST00000659458.1:ENST00000664443.1:ENST00000670295.1:ENST00000661655.1:ENST00000666390.1:ENST00000659079.1:ENST00000660442.1:ENST00000664009.1:ENST00000439362.6:ENST00000654473.1:ENST00000664999.1:ENST00000673728.1:ENST00000659791.1:ENST00000666144.1:ENST00000659933.1:ENST00000670715.1:ENST00000653568.1:ENST00000643013.1:ENST00000673866.1:ENST00000443467.6:ENST00000669875.1:ENST00000673653.1:ENST00000673988.1:ENST00000661945.1:ENST00000669515.1:ENST00000431385.6:ENST00000656416.1:ENST00000674037.1:ENST00000432818.5:ENST00000674013.1:ENST00000444301.5:ENST00000673964.1:ENST00000673845.1:ENST00000673756.1:ENST00000673960.1:ENST00000673804.1:ENST00000673632.1:ENST00000453478.2:ENST00000673937.1:ENST00000673654.1:ENST00000409569.2:ENST00000674087.1:ENST00000419736.5:ENST00000673840.1:ENST00000674045.1:ENST00000673821.1:ENST00000643766.1:ENST00000308604.5:ENST00000674026.1:ENST00000604981.5:ENST00000673894.1:ENST00000442293.5:ENST00000441075.1	lncRNA	lncRNA	lncRNA	lncRNA	7	106	2	2.28793	2.512835	2.73774	0.00291235	0.00113735	0.0494641	0.0307766
chr6	24777560	24777648	2836486	0	+	0.284091	(0.28,0.32]	chr6	265895	4	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	GMNN	ENSG00000112312.10	ENST00000356509.7:ENST00000230056.8:ENST00000468943.1:ENST00000620958.4:ENST00000378054.6:ENST00000476555.5:ENST00000378059.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	79	2	1.72287	2.51275	3.30263	0.0286502	0.0038504	0.139456	0.0542786
chr3	43703781	43703880	1410308	0	+	0.434343	(0.408,0.44]	chr3	147937	8	INTRON	INTRON	ABHD5	ENSG00000011198.10	ENST00000643520.1:ENST00000458276.7:ENST00000649763.1:ENST00000643140.1:ENST00000643500.1:ENST00000644371.2:ENST00000013894.3:ENST00000646378.1:ENST00000643477.1:ENST00000646799.1:ENST00000454293.2:ENST00000642351.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	76	2	1.74108	2.512745	3.28441	0.0424099	2.01433e-4	0.148082	0.0124157
chr17	49710423	49710515	6793605	0	-	0.347826	(0.32,0.35]	chr17	670370	2	UTR3	UTR3:EXON_MRNA	FAM117A	ENSG00000121104.8	ENST00000240364.7	protein_coding	protein_coding	protein_coding	protein_coding	9	152	2	1.98047	2.5126850000000003	3.0449	0.00919797	6.69583e-5	0.0815812	0.0067809
chr10	118310259	118310358	4703261	0	-	0.414141	(0.408,0.44]	chr10	433794	125	UTR3	UTR3:EXON_MRNA	FAM204A	ENSG00000165669.14	ENST00000369183.9	protein_coding	protein_coding	protein_coding	protein_coding	8	114	2	2.11768	2.512575	2.90747	0.00352982	4.77325e-4	0.0546236	0.0202392
chr9	20877	20976	4226139	0	-	0.515152	(0.476,0.515]	chr9	388479	20	INTRON	INTRON	WASHC1	ENSG00000181404.18	ENST00000442898.5:ENST00000696149.1:ENST00000696150.1:ENST00000696151.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	101	2	1.85394	2.5125699999999997	3.1712	0.00763096	4.95874e-4	0.0777238	0.0206925
chr5	171985528	171985627	2772530	0	-	0.353535	(0.35,0.378]	chr5	260958	79	INTRON	INTRON	FBXW11	ENSG00000072803.18	ENST00000296933.10:ENST00000517395.6:ENST00000265094.9:ENST00000393802.6:ENST00000523843.5:ENST00000519693.5:ENST00000520376.1:ENST00000522507.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	37	2	2.48657	2.512565	2.53856	0.032907	0.0326077	0.145164	0.133687
chr8	23558308	23558408	3715393	0	+	0.51	(0.476,0.515]	chr8	345227	147	INTRON	INTRON	SLC25A37	ENSG00000147454.14	ENST00000519973.6:ENST00000290075.10:ENST00000417331.6:ENST00000518881.5:ENST00000520654.1:ENST00000523930.1:ENST00000523883.5:ENST00000517923.1:ENST00000520949.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	141	2	2.12347	2.51253	2.90159	0.00222235	1.74832e-4	0.0435144	0.01216
chr8	60523152	60523252	3757862	0	+	0.48	(0.476,0.515]	chr8	349495	55	INTRON	INTRON	RAB2A	ENSG00000104388.15	ENST00000531289.5:ENST00000262646.12:ENST00000481569.1:ENST00000529579.5:ENST00000466595.5:ENST00000429861.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	46	2	1.72558	2.512485	3.29939	0.0767648	0.00211868	0.196164	0.0425644
chr17	39381387	39381487	6766450	0	-	0.5	(0.476,0.515]	chr17	665497	378	INTRON	INTRON	FBXL20	ENSG00000108306.13	ENST00000264658.11:ENST00000583610.5:ENST00000394294.7:ENST00000577399.5:ENST00000647139.1	protein_coding	protein_coding	protein_coding	protein_coding	3	45	2	2.26034	2.51247	2.7646	0.0166235	0.0162075	0.110511	0.101453
chr11	119003312	119003411	4874027	0	+	0.484848	(0.476,0.515]	chr11	455385	11	INTRON	INTRON	CENATAC	ENSG00000186166.9	ENST00000334418.6:ENST00000524670.5:ENST00000526463.5:ENST00000532132.5:ENST00000580556.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	45	2	2.19809	2.51241	2.82673	0.020317	0.0134403	0.121522	0.0946278
chr6	96831668	96831768	3163185	0	-	0.48	(0.476,0.515]	chr6	294999	314	INTRON	INTRON	GPR63	ENSG00000112218.9	ENST00000229955.4	protein_coding	protein_coding	protein_coding	protein_coding	3	45	2	2.19809	2.51241	2.82673	0.020317	0.0134403	0.121522	0.0946278
chr5	139650002	139650100	2501215	0	+	0.530612	(0.515,0.57]	chr5	239070	6	INTRON	INTRON	CXXC5	ENSG00000171604.12	ENST00000502295.1:ENST00000504944.1:ENST00000302517.8:ENST00000507139.5:ENST00000504844.1:ENST00000502336.5:ENST00000520967.1:ENST00000511048.1	protein_coding	protein_coding	protein_coding	protein_coding	7	86	2	2.22907	2.512395	2.79572	0.00383939	5.08572e-4	0.0542786	0.0202333
chr19	1435202	1435299	6995386	0	+	0.226804	[0,0.28]	chr19	693229	4	UTR3	UTR3:EXON_MRNA	DAZAP1	ENSG00000071626.17	ENST00000336761.10:ENST00000233078.9:ENST00000592522.5:ENST00000587079.5:ENST00000589484.5:ENST00000585485.2:ENST00000589874.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	190	2	2.3261	2.512345	2.69859	0.00538874	3.64217e-4	0.0643592	0.0170759
chr7	56059640	56059740	3319114	0	+	0.4	(0.378,0.408]	chr7	308509	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	CCT6A	ENSG00000146731.11	ENST00000335503.3:ENST00000275603.9:ENST00000492618.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	117	2	2.07081	2.5122999999999998	2.95379	0.00563808	2.62263e-4	0.0653997	0.0143317
chr4	102823142	102823242	2213316	0	-	0.28	[0,0.28]	chr4	216759	103	INTRON	INTRON	UBE2D3	ENSG00000109332.20	ENST00000453744.7:ENST00000394804.6:ENST00000394803.9:ENST00000394801.8:ENST00000343106.9:ENST00000503742.5:ENST00000321805.11:ENST00000350435.11:ENST00000338145.7:ENST00000349311.12:ENST00000504211.5:ENST00000357194.10:ENST00000505207.5:ENST00000507845.5:ENST00000502404.5:ENST00000508635.5:ENST00000505307.5:ENST00000510129.5:ENST00000508476.5:ENST00000502563.5:ENST00000508238.5:ENST00000514755.5:ENST00000508974.5:ENST00000502690.5:ENST00000508818.5:ENST00000503418.5:ENST00000508249.1:ENST00000513098.5:ENST00000503282.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	82	2	2.42871	2.512095	2.59548	0.0346067	0.00461175	0.136649	0.0626113
chr1	151074257	151074357	224188	0	+	0.49	(0.476,0.515]	chr1	25532	7	INTRON	INTRON	GABPB2	ENSG00000143458.12	ENST00000462520.5:ENST00000368918.8:ENST00000489549.5:ENST00000486076.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	46	2	2.21677	2.51203	2.80729	0.0207026	0.0126008	0.110999	0.0980703
chr1	174161356	174161456	257122	0	+	0.5	(0.476,0.515]	chr1	30720	13	INTRON	INTRON	RABGAP1L	ENSG00000152061.24	ENST00000357444.10:ENST00000251507.8:ENST00000681986.1:ENST00000635248.1:ENST00000457696.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	46	2	2.21677	2.51203	2.80729	0.0207026	0.0126008	0.110999	0.0980703
chr1	226306247	226306346	647829	0	-	0.50505	(0.476,0.515]	chr1	76752	47	INTRON	INTRON	LIN9	ENSG00000183814.16	ENST00000460719.5:ENST00000366808.6:ENST00000328205.9:ENST00000681046.1:ENST00000481685.1:ENST00000359525.2	protein_coding	protein_coding	protein_coding	protein_coding	3	46	2	2.21677	2.51203	2.80729	0.0207026	0.0126008	0.110999	0.0980703
chr16	74366044	74366143	6523528	0	-	0.494949	(0.476,0.515]	chr16	631626	48	INTRON	INTRON	PDPR2P	ENSG00000214331.8	ENST00000566802.5:ENST00000429810.2	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron	3	46	2	2.21677	2.51203	2.80729	0.0207026	0.0126008	0.110999	0.0980703
chr17	77404188	77404287	6680686	0	+	0.464646	(0.44,0.476]	chr17	652533	11	INTRON	INTRON	SEPTIN9	ENSG00000184640.20	ENST00000591198.5:ENST00000427177.6:ENST00000431235.6:ENST00000449803.6:ENST00000329047.13:ENST00000588575.1:ENST00000590294.6:ENST00000588690.6:ENST00000423034.6:ENST00000590059.5:ENST00000427674.6:ENST00000592420.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	88	2	1.75023	2.51186	3.27349	0.0240995	3.12677e-4	0.129929	0.0162569
chr3	12590085	12590174	1616661	0	-	0.359551	(0.35,0.378]	chr3	166899	1	UTR3	UTR3:EXON_MRNA:INTRON	RAF1	ENSG00000132155.14	ENST00000688543.1:ENST00000685348.1:ENST00000251849.9:ENST00000442415.7:ENST00000690585.1:ENST00000691888.1:ENST00000688444.1:ENST00000692093.1:ENST00000691724.1:ENST00000423275.6:ENST00000687326.1:ENST00000688803.1:ENST00000460610.2:ENST00000689876.1:ENST00000686455.1:ENST00000684903.1:ENST00000692830.1:ENST00000693312.1:ENST00000690460.1:ENST00000692773.1:ENST00000688625.1:ENST00000692069.1:ENST00000693664.1:ENST00000686762.1:ENST00000692311.1:ENST00000692558.1:ENST00000691779.1:ENST00000685738.1:ENST00000690397.1:ENST00000687923.1:ENST00000688269.1:ENST00000693705.1:ENST00000689097.1:ENST00000691899.1:ENST00000689914.1:ENST00000690625.1:ENST00000432427.3:ENST00000689389.1:ENST00000687257.1:ENST00000475353.2:ENST00000686409.1:ENST00000685653.1:ENST00000689540.1:ENST00000691396.1:ENST00000687505.1:ENST00000685437.1:ENST00000689418.1:ENST00000688914.1:ENST00000465826.6:ENST00000688326.1:ENST00000494557.2:ENST00000687940.1:ENST00000689481.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	106	2	1.33846	2.51185	3.68524	0.0687435	2.39681e-5	0.184298	0.00383194
chr1	28741536	28741628	58392	0	+	0.532609	(0.515,0.57]	chr1	7597	8	INTRON	INTRON	YTHDF2	ENSG00000198492.16	ENST00000542507.5:ENST00000474884.5:ENST00000373812.8:ENST00000541996.5:ENST00000478283.5:ENST00000496288.5:ENST00000476976.1:ENST00000475796.5:ENST00000468863.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	39	2	2.26012	2.51183	2.76354	0.0160033	0.0147344	0.109464	0.0983813
chr11	77774375	77774475	4995513	0	-	0.52	(0.515,0.57]	chr11	472047	93	INTRON	INTRON	RSF1	ENSG00000048649.14	ENST00000308488.11:ENST00000528095.5:ENST00000440064.2:ENST00000467567.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	39	2	2.26012	2.51183	2.76354	0.0160033	0.0147344	0.109464	0.0983813
chr12	22523025	22523125	5285206	0	-	0.54	(0.515,0.57]	chr12	503595	2	SS5_PROX	SS5_PROX:INTRON	C2CD5	ENSG00000111731.13	ENST00000333957.8:ENST00000446597.6:ENST00000536386.5:ENST00000396028.6:ENST00000542676.5:ENST00000545552.5:ENST00000541310.5:ENST00000542683.1:ENST00000540703.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	39	2	2.26012	2.51183	2.76354	0.0160033	0.0147344	0.109464	0.0983813
chr17	81684712	81684812	6690996	0	+	0.55	(0.515,0.57]	chr17	654001	1	SS3_ADJ	SS3_ADJ:SS3_PROX:SS5_PROX:INTRON	HGS	ENSG00000185359.14	ENST00000677161.1:ENST00000678096.1:ENST00000679191.1:ENST00000676546.1:ENST00000678387.1:ENST00000679170.1:ENST00000677109.1:ENST00000677484.1:ENST00000678115.1:ENST00000677243.1:ENST00000677044.1:ENST00000679336.1:ENST00000678196.1:ENST00000676462.1:ENST00000576393.5:ENST00000576498.5:ENST00000678105.1:ENST00000676478.1:ENST00000329138.9:ENST00000676721.1:ENST00000677209.1:ENST00000677225.1:ENST00000678866.1:ENST00000679275.1:ENST00000678541.1:ENST00000676729.1:ENST00000572392.2:ENST00000677012.1:ENST00000577012.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	60	2	1.82113	2.511765	3.2024	0.0118311	0.00322022	0.0962115	0.0507087
chr20	48938799	48938899	7282746	0	+	0.55	(0.515,0.57]	chr20	740596	164	INTRON	INTRON	ARFGEF2	ENSG00000124198.10	ENST00000371917.5:ENST00000681399.1:ENST00000679436.1:ENST00000681885.1:ENST00000681021.1:ENST00000680871.1:ENST00000681656.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	39	2	2.1885	2.511755	2.83501	0.0202537	0.0117686	0.121364	0.0894475
chr7	158694480	158694576	3688695	0	-	0.5625	(0.515,0.57]	chr7	342273	6	INTRON	INTRON	NCAPG2	ENSG00000146918.20	ENST00000356309.8:ENST00000432615.5:ENST00000409423.5:ENST00000409339.3:ENST00000621338.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	39	2	2.1885	2.511755	2.83501	0.0202537	0.0117686	0.121364	0.0894475
chr9	111472096	111472196	4315170	0	-	0.47	(0.44,0.476]	chr9	396838	202	INTRON	INTRON	ECPAS	ENSG00000136813.15	ENST00000684092.1:ENST00000338205.9:ENST00000259335.8:ENST00000602447.5:ENST00000602978.1	protein_coding	protein_coding	protein_coding	protein_coding	4	55	2	1.61163	2.511695	3.41176	0.0598319	0.00130987	0.169278	0.0333932
chr1	65261611	65261710	135607	0	+	0.363636	(0.35,0.378]	chr1	15341	66	INTRON	INTRON	DNAJC6	ENSG00000116675.16	ENST00000463018.5:ENST00000494710.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	60	2	1.76773	2.51161	3.25549	0.0373863	0.00363602	0.155878	0.0535085
chr1	160329871	160329970	572182	0	-	0.474747	(0.44,0.476]	chr1	69355	38	INTRON	INTRON	COPA	ENSG00000122218.17	ENST00000241704.8:ENST00000696204.1:ENST00000696203.1:ENST00000649963.1:ENST00000696208.1:ENST00000696207.1:ENST00000649676.1:ENST00000368069.7:ENST00000647693.1:ENST00000649787.1:ENST00000650154.1:ENST00000647799.1:ENST00000648805.1:ENST00000647683.1:ENST00000649231.1:ENST00000648501.1:ENST00000696209.1:ENST00000696210.1:ENST00000696211.1:ENST00000647899.1:ENST00000696212.1:ENST00000696214.1:ENST00000696213.1:ENST00000696215.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	61	2	2.24189	2.51159	2.78129	0.0193405	0.00229634	0.108861	0.0439319
chr4	143533473	143533570	2055685	0	+	0.391753	(0.378,0.408]	chr4	203872	26	INTRON	INTRON	SMARCA5	ENSG00000153147.6	ENST00000283131.4	protein_coding	protein_coding	protein_coding	protein_coding	3	47	2	2.35527	2.5115600000000002	2.66785	0.0224639	0.0121511	0.11692	0.0963966
chr1	180984476	180984576	595958	0	-	0.47	(0.44,0.476]	chr1	71221	4	SS5_PROX	SS5_PROX:INTRON	STX6	ENSG00000135823.14	ENST00000542060.5:ENST00000258301.6:ENST00000469135.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	55	2	1.7651	2.511555	3.25801	0.039388	0.00248185	0.143072	0.0460771
chr17	30122666	30122765	6587447	0	+	0.464646	(0.44,0.476]	chr17	640557	41	INTRON	INTRON	NSRP1	ENSG00000126653.18	ENST00000540900.7:ENST00000584423.5:ENST00000612959.4:ENST00000247026.10:ENST00000577289.6:ENST00000584154.5:ENST00000394826.8:ENST00000479218.6:ENST00000475652.5:ENST00000584317.5:ENST00000583301.5:ENST00000585881.5:ENST00000467446.6:ENST00000580103.6:ENST00000581048.5:ENST00000588614.1:ENST00000589608.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	66	2	1.93713	2.51152	3.08591	0.0138947	0.00481262	0.0955491	0.0638089
chr10	21552518	21552616	4404593	0	+	0.520408	(0.515,0.57]	chr10	406433	2	INTRON	INTRON	MLLT10	ENSG00000078403.17	ENST00000651097.1:ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000377100.8:ENST00000377091.7:ENST00000650772.1:ENST00000651298.1:ENST00000652497.1:ENST00000495130.5:ENST00000377059.7:ENST00000621220.4:ENST00000476557.5:ENST00000462999.5:ENST00000430455.2:ENST00000479634.1:ENST00000480415.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	86	2	2.4745	2.51151	2.54852	0.00279583	7.08868e-4	0.0469265	0.0242289
chr18	9487126	9487226	6871250	0	+	0.29	(0.28,0.32]	chr18	680716	73	INTRON	INTRON	RALBP1	ENSG00000017797.13	ENST00000019317.8:ENST00000585015.6:ENST00000383432.8:ENST00000609094.2:ENST00000458039.3:ENST00000577221.1	protein_coding	protein_coding	protein_coding	protein_coding	5	80	2	1.40698	2.5114900000000002	3.616	0.0778529	7.42427e-4	0.196685	0.024913
chr8	22446957	22447057	3713378	0	+	0.46	(0.44,0.476]	chr8	344875	51	INTRON	INTRON	PPP3CC	ENSG00000120910.15	ENST00000518852.5:ENST00000240139.10:ENST00000289963.12:ENST00000397775.7:ENST00000522000.1	protein_coding	protein_coding	protein_coding	protein_coding	4	55	2	1.75627	2.51148	3.26669	0.0380723	0.00305435	0.157702	0.0493883
chr21	46195475	46195575	7470527	0	-	0.53	(0.515,0.57]	chr21	761455	4	SS5_PROX	SS5_PROX:INTRON	LSS	ENSG00000160285.15	ENST00000356396.8:ENST00000397728.8:ENST00000457828.6:ENST00000522411.5	protein_coding	protein_coding	protein_coding	protein_coding	8	102	2	2.45375	2.51145	2.56915	0.00273605	3.80744e-4	0.0483437	0.0181283
chr21	43937538	43937638	7414517	0	+	0.45	(0.44,0.476]	chr21	755706	117	INTRON	INTRON	AGPAT3	ENSG00000160216.21	ENST00000291572.13:ENST00000448287.5:ENST00000398061.5:ENST00000327505.6:ENST00000445582.5:ENST00000398063.6	protein_coding	protein_coding	protein_coding	protein_coding	5	73	2	2.42643	2.511375	2.59632	0.00579248	0.0033369	0.0662959	0.0528877
chr1	180480984	180481084	595617	0	-	0.4	(0.378,0.408]	chr1	71198	504	INTRON	INTRON	ACBD6	ENSG00000230124.8	ENST00000645415.1:ENST00000642319.1:ENST00000367595.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	47	2	2.17608	2.511355	2.84663	0.0218783	0.0133954	0.123836	0.0946278
chr13	37003739	37003836	5468901	0	+	0.391753	(0.378,0.408]	chr13	523995	3	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	EXOSC8	ENSG00000120699.14	ENST00000489088.5:ENST00000470423.2:ENST00000684866.1:ENST00000686701.1:ENST00000488108.6:ENST00000689744.1:ENST00000692143.1:ENST00000464235.6:ENST00000239893.9:ENST00000693100.1:ENST00000685624.1:ENST00000389704.4:ENST00000686729.1:ENST00000692477.1:ENST00000474661.5:ENST00000686472.1:ENST00000490537.6:ENST00000690774.1:ENST00000688436.1:ENST00000692787.1:ENST00000685563.1:ENST00000693733.1:ENST00000687482.1:ENST00000685643.1:ENST00000690673.1:ENST00000488779.6:ENST00000689948.1:ENST00000688064.1:ENST00000692761.1:ENST00000687944.1:ENST00000692588.1:ENST00000691611.1:ENST00000692636.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	47	2	2.17608	2.511355	2.84663	0.0218783	0.0133954	0.123836	0.0946278
chr17	60604748	60604848	6644512	0	+	0.27	[0,0.28]	chr17	648914	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	PPM1D	ENSG00000170836.13	ENST00000305921.8:ENST00000693102.1:ENST00000685212.1:ENST00000693196.1:ENST00000392995.7:ENST00000685582.1:ENST00000688505.1:ENST00000629650.3:ENST00000687355.1:ENST00000686064.1:ENST00000689445.1:ENST00000590418.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	65	2	2.28885	2.511345	2.73384	0.0246308	0.0181093	0.12011	0.114853
chr11	86063557	86063657	5014788	0	-	0.32	(0.28,0.32]	chr11	473022	316	INTRON	INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000630913.2:ENST00000528398.5:ENST00000356360.9:ENST00000534412.5:ENST00000531558.1:ENST00000531930.5:ENST00000532041.5:ENST00000525162.5:ENST00000528256.1:ENST00000528411.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	19	330	2	2.4119	2.511335	2.61077	3.53178e-4	1.30658e-4	0.0174707	0.00983914
chr7	127911302	127911402	3405010	0	+	0.26	[0,0.28]	chr7	318161	61	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000465900.5:ENST00000486037.1:ENST00000484767.5:ENST00000492840.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	65	2	2.24546	2.51131	2.77716	0.022039	0.0206502	0.122348	0.115395
chr1	21126611	21126711	393127	0	-	0.36	(0.35,0.378]	chr1	46836	136	INTRON	INTRON	EIF4G3	ENSG00000075151.24	ENST00000374935.7:ENST00000602326.6:ENST00000685872.1:ENST00000686579.1:ENST00000688741.1:ENST00000400422.6:ENST00000634879.2:ENST00000693470.1:ENST00000685814.1:ENST00000356916.7:ENST00000682284.1:ENST00000438975.5:ENST00000411888.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	61	2	1.65083	2.51129	3.37175	0.0521072	0.00236696	0.177022	0.043778
chr19	11114642	11114737	7017083	0	+	0.515789	(0.515,0.57]	chr19	697473	5	INTRON	INTRON	LDLR	ENSG00000130164.14	ENST00000557933.5:ENST00000558518.6:ENST00000545707.5:ENST00000535915.5:ENST00000455727.6:ENST00000558013.5:ENST00000252444.9:ENST00000559340.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	72	2	2.05789	2.51128	2.96467	0.00786509	8.94279e-4	0.076155	0.0273458
chr9	93473473	93473573	4158264	0	+	0.54	(0.515,0.57]	chr9	379133	17	INTRON	INTRON	FAM120A	ENSG00000048828.17	ENST00000277165.11:ENST00000375389.7:ENST00000446420.2	protein_coding	protein_coding	protein_coding	protein_coding	7	80	2	1.86218	2.511275	3.16037	0.0100169	4.09074e-4	0.0880217	0.0185763
chr10	48328362	48328462	4431206	0	+	0.42	(0.408,0.44]	chr10	408569	20	INTRON	INTRON	MAPK8	ENSG00000107643.17	ENST00000395611.7:ENST00000432379.5:ENST00000374189.6:ENST00000429041.6:ENST00000374179.8:ENST00000426557.5:ENST00000476134.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	94	2	1.9279	2.51125	3.0946	0.00807087	7.51561e-4	0.0806514	0.0251179
chr21	38110321	38110421	7463989	0	-	0.25	[0,0.28]	chr21	760303	106	INTRON	INTRON	DSCR4	ENSG00000184029.9	ENST00000398948.5:ENST00000328264.7:ENST00000482032.1	lncRNA	lncRNA	lncRNA	lncRNA	2	48	2	2.33055	2.51121	2.69187	0.062338	0.0221271	0.175343	0.123903
chr3	142159624	142159724	1835474	0	-	0.24	[0,0.28]	chr3	184380	22	UTR3	UTR3:EXON_MRNA	GK5	ENSG00000175066.16	ENST00000392993.7	protein_coding	protein_coding	protein_coding	protein_coding	2	48	2	2.33055	2.51121	2.69187	0.062338	0.0221271	0.175343	0.123903
chr11	28116484	28116583	4752235	0	+	0.434343	(0.408,0.44]	chr11	440072	25	INTRON	INTRON	METTL15	ENSG00000169519.21	ENST00000406787.7:ENST00000403099.5:ENST00000451385.6:ENST00000407364.8:ENST00000532947.2:ENST00000634627.1:ENST00000634973.1:ENST00000303459.10:ENST00000634721.1:ENST00000634762.1:ENST00000437814.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	133	2	2.27481	2.5112	2.74759	0.00102152	6.70606e-4	0.029231300000000002	0.0235103
chr16	1372209	1372307	6427542	0	-	0.438776	(0.408,0.44]	chr16	617816	2	INTRON	INTRON	UNKL	ENSG00000059145.19	ENST00000389221.9:ENST00000248104.11:ENST00000403703.5:ENST00000674376.1:ENST00000397464.5:ENST00000508903.7:ENST00000402641.6:ENST00000513783.1:ENST00000515195.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	12	162	2	1.78867	2.51114	3.23361	0.00725228	1.44305e-5	0.072984	0.00284474
chr1	161785187	161785286	236040	0	+	0.414141	(0.408,0.44]	chr1	28540	7	INTRON	INTRON	ATF6	ENSG00000118217.7	ENST00000680688.1:ENST00000679853.1:ENST00000681738.1:ENST00000681801.1:ENST00000681779.1:ENST00000367942.4:ENST00000681001.1:ENST00000679886.1:ENST00000681169.1:ENST00000681492.1:ENST00000680481.1:ENST00000680180.1:ENST00000681187.1:ENST00000680462.1:ENST00000680633.1:ENST00000681557.1:ENST00000681912.1:ENST00000679833.1:ENST00000681541.1:ENST00000681036.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	34	2	2.27698	2.5110799999999998	2.74518	0.0583528	0.0152229	0.167723	0.108535
chr15	42833971	42834070	6158133	0	-	0.424242	(0.408,0.44]	chr15	586271	35	INTRON	INTRON	TTBK2	ENSG00000128881.18	ENST00000267890.11:ENST00000567840.5:ENST00000567274.5:ENST00000564431.5:ENST00000562880.5:ENST00000566931.1	protein_coding	protein_coding	protein_coding	protein_coding	2	34	2	2.27698	2.5110799999999998	2.74518	0.0583528	0.0152229	0.167723	0.108535
chr2	175944579	175944679	1272620	0	-	0.44	(0.408,0.44]	chr2	134544	31	INTRON	INTRON	LNPK	ENSG00000144320.14	ENST00000272748.9:ENST00000544803.5:ENST00000409660.5:ENST00000431754.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	34	2	2.27698	2.5110799999999998	2.74518	0.0583528	0.0152229	0.167723	0.108535
chr16	23868813	23868913	6324087	0	+	0.39	(0.378,0.408]	chr16	605694	3	SS3_PROX	SS3_PROX:INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000498058.1:ENST00000645517.1:ENST00000498739.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	88	2	2.46596	2.511015	2.55607	0.00704647	0.00125753	0.0718189	0.03295
chr10	69193452	69193547	4445206	0	+	0.452632	(0.44,0.476]	chr10	410110	3	INTRON	INTRON	SUPV3L1	ENSG00000156502.14	ENST00000359655.9:ENST00000483572.5:ENST00000422378.1:ENST00000478227.5:ENST00000486661.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	142	2	2.34769	2.510965	2.67424	0.00155283	1.95461e-4	0.0358949	0.0122528
chrX	151972372	151972468	7908617	0	-	0.510417	(0.476,0.515]	chrX	804815	12	EXON_MRNA	EXON_MRNA:INTRON	GABRE	ENSG00000102287.19	ENST00000370328.4:ENST00000441219.5:ENST00000491339.1:ENST00000417300.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	31	420	2	2.07676	2.510955	2.94515	2.18271e-4	3.91939e-6	0.0129685	0.00142759
chr17	81615777	81615877	6849395	0	-	0.43	(0.408,0.44]	chr17	678231	15	INTRON	INTRON	NPLOC4	ENSG00000182446.14	ENST00000331134.11:ENST00000374747.9:ENST00000574897.5:ENST00000625705.1:ENST00000570300.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	34	2	2.43988	2.510835	2.58179	0.0398236	0.024638	0.143072	0.131869
chr16	30726453	30726549	6338944	0	+	0.40625	(0.378,0.408]	chr16	607822	3	INTRON	INTRON	SRCAP	ENSG00000080603.17	ENST00000262518.9:ENST00000395059.6	protein_coding	protein_coding	protein_coding	protein_coding	2	35	2	2.30961	2.51072	2.71183	0.055088	0.0170789	0.165463	0.110899
chr16	70404985	70405085	6511123	0	-	0.4	(0.378,0.408]	chr16	630689	35	INTRON	INTRON	ST3GAL2	ENSG00000157350.13	ENST00000342907.3:ENST00000566097.1:ENST00000561708.1:ENST00000567586.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	35	2	2.30961	2.51072	2.71183	0.055088	0.0170789	0.165463	0.110899
chr19	41345461	41345558	7185419	0	-	0.381443	(0.378,0.408]	chr19	726898	2	INTRON	INTRON	TGFB1	ENSG00000105329.11	ENST00000221930.6:ENST00000600196.2:ENST00000677934.1:ENST00000597453.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	35	2	2.30961	2.51072	2.71183	0.055088	0.0170789	0.165463	0.110899
chr2	58075188	58075288	784251	0	+	0.4	(0.378,0.408]	chr2	88182	163	INTRON	INTRON	VRK2	ENSG00000028116.18	ENST00000648897.1:ENST00000417641.6:ENST00000435505.6:ENST00000412104.6:ENST00000432057.2:ENST00000440705.6:ENST00000340157.9:ENST00000428021.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	35	2	2.30961	2.51072	2.71183	0.055088	0.0170789	0.165463	0.110899
chr5	134813738	134813838	2490951	0	+	0.38	(0.378,0.408]	chr5	237984	15	INTRON	INTRON	DDX46	ENSG00000145833.16	ENST00000452510.7:ENST00000507392.5:ENST00000354283.8:ENST00000503946.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	35	2	2.30961	2.51072	2.71183	0.055088	0.0170789	0.165463	0.110899
chr6	38089772	38089872	2859739	0	+	0.38	(0.378,0.408]	chr6	270257	10	INTRON	INTRON	ZFAND3	ENSG00000156639.12	ENST00000287218.9:ENST00000373391.6:ENST00000474522.5:ENST00000373389.5:ENST00000440482.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	35	2	2.30961	2.51072	2.71183	0.055088	0.0170789	0.165463	0.110899
chr8	67075323	67075423	3776733	0	+	0.39	(0.378,0.408]	chr8	350243	4	SS5_PROX	SS5_PROX:INTRON	CSPP1	ENSG00000104218.16	ENST00000676113.1:ENST00000675306.2:ENST00000678156.1:ENST00000262210.11:ENST00000678017.1:ENST00000675869.1:ENST00000521919.6:ENST00000678542.1:ENST00000677619.1:ENST00000676605.1:ENST00000676471.1:ENST00000677256.1:ENST00000676847.1:ENST00000677009.1:ENST00000675820.1:ENST00000676317.1:ENST00000677592.1:ENST00000676573.1:ENST00000678318.1:ENST00000677473.1:ENST00000674993.1:ENST00000678553.1:ENST00000678927.1:ENST00000678204.1:ENST00000679226.1:ENST00000676882.1:ENST00000675955.1:ENST00000678728.1:ENST00000677430.1:ENST00000677455.1:ENST00000677071.1:ENST00000678616.1:ENST00000678362.1:ENST00000679112.1:ENST00000678645.1:ENST00000676567.1:ENST00000677845.1:ENST00000519701.5:ENST00000519163.6:ENST00000676858.1:ENST00000678747.1:ENST00000678821.1:ENST00000678744.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	35	2	2.30961	2.51072	2.71183	0.055088	0.0170789	0.165463	0.110899
chr9	131188158	131188257	4216272	0	+	0.383838	(0.378,0.408]	chr9	386635	4	INTRON	INTRON	NUP214	ENSG00000126883.19	ENST00000695497.1:ENST00000695498.1:ENST00000695496.1:ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000525980.5:ENST00000526346.5:ENST00000531929.5:ENST00000651334.1:ENST00000524578.6:ENST00000453861.6:ENST00000470765.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	35	2	2.30961	2.51072	2.71183	0.055088	0.0170789	0.165463	0.110899
chr5	131731438	131731538	2720087	0	-	0.5	(0.476,0.515]	chr5	255723	4	SS3_PROX	SS3_PROX:INTRON	FNIP1	ENSG00000217128.13	ENST00000510461.6:ENST00000307954.12:ENST00000307968.11:ENST00000511848.1	protein_coding	protein_coding	protein_coding	protein_coding	15	212	2	2.47436	2.5106450000000002	2.54693	2.17256e-4	1.51545e-4	0.0129235	0.0112706
chr11	83082795	83082894	4840536	0	+	0.555556	(0.515,0.57]	chr11	451472	6	INTRON	INTRON	RAB30-DT	ENSG00000246067.9	ENST00000658004.1:ENST00000527627.5:ENST00000533528.1:ENST00000658917.1:ENST00000669005.1:ENST00000665456.1	lncRNA	lncRNA	lncRNA	lncRNA	3	40	2	1.7074	2.51064	3.31388	0.0779432	0.00174704	0.196685	0.0386026
chr11	32594913	32595013	4764588	0	+	0.36	(0.35,0.378]	chr11	440577	1	CDS	CDS:UTR3:EXON_MRNA	EIF3M	ENSG00000149100.13	ENST00000531921.5:ENST00000531120.6:ENST00000525782.5:ENST00000524896.5:ENST00000323213.9:ENST00000524711.5:ENST00000526267.1:ENST00000525054.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	200	2	2.38509	2.510625	2.63616	0.00100188	9.40055e-5	0.0288997	0.00813008
chr20	50908704	50908802	7355650	0	-	0.459184	(0.44,0.476]	chr20	750095	33	INTRON	INTRON	ADNP	ENSG00000101126.18	ENST00000621696.5:ENST00000673732.1:ENST00000396029.8:ENST00000644386.1:ENST00000396032.8:ENST00000349014.8:ENST00000645081.1:ENST00000642364.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	109	2	1.82337	2.51061	3.19785	0.0063815	4.51048e-4	0.0725747	0.0196417
chr12	53514843	53514943	5327881	0	-	0.4	(0.378,0.408]	chr12	508327	29	UTR3	UTR3:EXON_MRNA:INTRON	ATF7	ENSG00000170653.19	ENST00000548446.6:ENST00000420353.7:ENST00000456903.8	protein_coding	protein_coding	protein_coding	protein_coding	2	35	2	2.38873	2.5106	2.63247	0.0458857	0.0215745	0.149888	0.123836
chr13	51967750	51967846	5596470	0	-	0.385417	(0.378,0.408]	chr13	534953	24	INTRON	INTRON	ATP7B	ENSG00000123191.16	ENST00000242839.10:ENST00000344297.9:ENST00000674147.1:ENST00000448424.7:ENST00000634620.1:ENST00000400370.8:ENST00000634844.1:ENST00000673772.1:ENST00000634308.1:ENST00000418097.7:ENST00000400366.6:ENST00000635406.1:ENST00000482841.6:ENST00000483772.2:ENST00000673864.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	35	2	2.38873	2.5106	2.63247	0.0458857	0.0215745	0.149888	0.123836
chr22	29969476	29969575	7498391	0	+	0.40404	(0.378,0.408]	chr22	765027	120	INTRON	INTRON	MTMR3	ENSG00000100330.16	ENST00000333027.7:ENST00000401950.7:ENST00000495098.5:ENST00000445401.5:ENST00000323630.9:ENST00000351488.7:ENST00000415511.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	35	2	2.38873	2.5106	2.63247	0.0458857	0.0215745	0.149888	0.123836
chr7	23373245	23373344	3502688	0	-	0.383838	(0.378,0.408]	chr7	326877	102	INTRON	INTRON	IGF2BP3	ENSG00000136231.14	ENST00000258729.8:ENST00000421467.6:ENST00000468263.5:ENST00000492771.5:ENST00000479504.5:ENST00000466809.6:ENST00000491719.5:ENST00000465058.5:ENST00000469723.5:ENST00000474105.5:ENST00000476938.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	35	2	2.38873	2.5106	2.63247	0.0458857	0.0215745	0.149888	0.123836
chr8	66675723	66675822	3774972	0	+	0.383838	(0.378,0.408]	chr8	350072	77	INTRON	INTRON	C8orf44	ENSG00000288596.2	ENST00000521113.1:ENST00000661636.1:ENST00000521889.5	lncRNA	lncRNA	lncRNA	lncRNA	2	35	2	2.38873	2.5106	2.63247	0.0458857	0.0215745	0.149888	0.123836
chr9	26946496	26946596	4238066	0	-	0.38	(0.378,0.408]	chr9	389653	2	SS5_PROX	SS5_PROX:INTRON	PLAA	ENSG00000137055.15	ENST00000397292.8:ENST00000520884.5:ENST00000523212.1	protein_coding	protein_coding	protein_coding	protein_coding	2	35	2	2.38873	2.5106	2.63247	0.0458857	0.0215745	0.149888	0.123836
chr3	138793567	138793666	1831087	0	-	0.434343	(0.408,0.44]	chr3	184056	231	INTRON	INTRON	PIK3CB	ENSG00000051382.9	ENST00000674063.1:ENST00000477593.5:ENST00000462898.5:ENST00000483968.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	86	2	2.15507	2.510595	2.86612	0.00618525	0.00157924	0.0677395	0.0366789
chr7	66702375	66702475	3325091	0	+	0.4	(0.378,0.408]	chr7	309221	168	INTRON	INTRON	RABGEF1	ENSG00000154710.18	ENST00000607882.5	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	5	76	2	2.39048	2.5105250000000003	2.63057	0.0053733	0.00395852	0.0642754	0.057511
chr9	112247532	112247632	4317093	0	-	0.37	(0.35,0.378]	chr9	397042	48	INTRON	INTRON	PTBP3	ENSG00000119314.16	ENST00000334318.10:ENST00000458258.5:ENST00000374257.6:ENST00000374255.6:ENST00000343327.6	protein_coding	protein_coding	protein_coding	protein_coding	6	93	2	1.64329	2.5104499999999996	3.37761	0.0384351	1.38324e-4	0.142316	0.0101276
chr19	58271122	58271221	7217684	0	-	0.515152	(0.476,0.515]	chr19	733257	111	INTRON	INTRON	ZNF8-DT	ENSG00000268516.3	ENST00000597230.3	lncRNA	lncRNA	lncRNA	lncRNA	3	46	2	1.91817	2.510405	3.10264	0.0459211	0.00543163	0.164984	0.0645052
chr2	200940747	200940847	1310656	0	-	0.5	(0.476,0.515]	chr2	137180	1	SS5_PROX	SS5_PROX:INTRON	ORC2	ENSG00000115942.9	ENST00000234296.7:ENST00000474877.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	46	2	1.91817	2.510405	3.10264	0.0459211	0.00543163	0.164984	0.0645052
chr2	182991665	182991764	1285553	0	-	0.282828	(0.28,0.32]	chr2	135394	21	INTRON	INTRON	NCKAP1	ENSG00000061676.15	ENST00000361354.9:ENST00000360982.2	protein_coding	protein_coding	protein_coding	protein_coding	3	57	2	2.28998	2.510375	2.73077	0.0220748	0.0166401	0.115395	0.110511
chr7	119751979	119752077	3628858	0	-	0.459184	(0.44,0.476]	chr7	337320	13	EXON_LNCRNA	EXON_LNCRNA:INTRON	LINC02476	ENSG00000225546.6	ENST00000660268.1:ENST00000431071.5:ENST00000426413.2	lncRNA	lncRNA	lncRNA	lncRNA	19	260	2	2.00932	2.510345	3.01137	8.10562e-4	1.43991e-5	0.0259609	0.00303221
chr16	337456	337556	6426704	0	-	0.43	(0.408,0.44]	chr16	617500	224	INTRON	INTRON	AXIN1	ENSG00000103126.15	ENST00000262320.8:ENST00000461023.5:ENST00000354866.7:ENST00000481769.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	74	2	1.96534	2.510335	3.05533	0.0216499	6.50769e-4	0.11491	0.0231135
chr2	169631336	169631423	906954	0	+	0.287356	(0.28,0.32]	chr2	100065	5	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PPIG	ENSG00000138398.17	ENST00000678088.1:ENST00000677392.1:ENST00000433207.6:ENST00000679324.1:ENST00000414307.6:ENST00000676508.1:ENST00000260970.8:ENST00000678695.1:ENST00000409714.7:ENST00000677750.1:ENST00000678721.1:ENST00000462903.6:ENST00000676756.1:ENST00000679107.1:ENST00000678499.1:ENST00000678638.1:ENST00000448752.7:ENST00000482772.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	57	2	2.24061	2.510325	2.78004	0.0194267	0.0193244	0.119831	0.108861
chr6	30314482	30314582	3076871	0	-	0.3	(0.28,0.32]	chr6	286151	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	HCG18	ENSG00000231074.10	ENST00000665953.1:ENST00000670397.1:ENST00000659132.1:ENST00000659836.1:ENST00000669374.1:ENST00000653541.1:ENST00000670071.1:ENST00000666294.1:ENST00000657247.1:ENST00000654996.1:ENST00000653301.1:ENST00000658695.1:ENST00000664861.1:ENST00000668974.1:ENST00000654915.1:ENST00000660593.1:ENST00000687430.1:ENST00000656629.1:ENST00000602550.5:ENST00000687815.1:ENST00000449544.6:ENST00000426882.6:ENST00000438412.6:ENST00000602698.6:ENST00000454129.5:ENST00000444126.5:ENST00000602290.2:ENST00000412685.8:ENST00000602861.6:ENST00000454269.6:ENST00000686575.1:ENST00000687471.1:ENST00000691282.1:ENST00000413358.6:ENST00000602498.1	lncRNA	lncRNA	lncRNA	lncRNA	3	57	2	2.24061	2.510325	2.78004	0.0194267	0.0193244	0.119831	0.108861
chr7	158643788	158643888	3688149	0	-	0.57	(0.515,0.57]	chr7	342114	1	SS5_PROX	SS5_PROX:INTRON	NCAPG2	ENSG00000146918.20	ENST00000356309.8:ENST00000432615.5:ENST00000409423.5:ENST00000441982.5:ENST00000467785.5:ENST00000409339.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	87	2	2.3252100000000002	2.5103150000000003	2.69542	0.00525266	3.15632e-4	0.0633615	0.0159645
chr8	108212719	108212818	4022894	0	-	0.535354	(0.515,0.57]	chr8	367615	89	INTRON	INTRON	EIF3E	ENSG00000104408.11	ENST00000678042.1:ENST00000678773.1:ENST00000677409.1:ENST00000676892.1:ENST00000523674.2:ENST00000677674.1:ENST00000220849.10:ENST00000678937.1:ENST00000677084.1:ENST00000676706.1:ENST00000518100.6:ENST00000677040.1:ENST00000676698.1:ENST00000522352.6:ENST00000521297.2:ENST00000677501.1:ENST00000519030.6:ENST00000519627.2:ENST00000518345.2:ENST00000522445.6:ENST00000678334.1:ENST00000678023.1:ENST00000678797.1:ENST00000677614.1:ENST00000676642.1:ENST00000677965.1:ENST00000678901.1:ENST00000678243.1:ENST00000676663.1:ENST00000679198.1:ENST00000677524.1:ENST00000521614.6:ENST00000678004.1:ENST00000678881.1:ENST00000677590.1:ENST00000677272.1:ENST00000677317.1:ENST00000676530.1:ENST00000677696.1:ENST00000519517.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	87	2	2.3252100000000002	2.5103150000000003	2.69542	0.00525266	3.15632e-4	0.0633615	0.0159645
chr16	89363876	89363976	6542319	0	-	0.46	(0.44,0.476]	chr16	634225	18	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000647238.1:ENST00000644045.1:ENST00000643147.1:ENST00000644139.1:ENST00000568512.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	73	2	2.34775	2.510285	2.67282	0.00466011	0.00433875	0.0629753	0.0579868
chr10	110133910	110134007	4519678	0	+	0.278351	[0,0.28]	chr10	416871	4	UTR3	UTR3:EXON_MRNA	ADD3	ENSG00000148700.15	ENST00000360162.7:ENST00000277900.12:ENST00000356080.9	protein_coding	protein_coding	protein_coding	protein_coding	2	48	2	2.27119	2.5101	2.74901	0.070351	0.0188843	0.184298	0.118148
chr18	73251559	73251654	6988490	0	-	0.221053	[0,0.28]	chr18	691709	2	EXON_LNCRNA	EXON_LNCRNA:INTRON	LINC02864	ENSG00000263711.6	ENST00000584544.5:ENST00000581011.5:ENST00000581862.6:ENST00000669547.1:ENST00000661525.1:ENST00000583405.5:ENST00000582571.2:ENST00000667943.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	2	48	2	2.27119	2.5101	2.74901	0.070351	0.0188843	0.184298	0.118148
chr17	42298165	42298264	6611124	0	+	0.484848	(0.476,0.515]	chr17	643999	20	INTRON	INTRON	STAT5A	ENSG00000126561.18	ENST00000345506.8:ENST00000546010.6:ENST00000677893.1:ENST00000676631.1:ENST00000590726.7:ENST00000678903.1:ENST00000590949.6:ENST00000676585.1:ENST00000588868.5:ENST00000677301.1	protein_coding	protein_coding	protein_coding	protein_coding	6	87	2	2.3399	2.510065	2.68023	0.00353671	0.00275491	0.0546236	0.0469265
chr12	113821557	113821656	5420815	0	-	0.555556	(0.515,0.57]	chr12	517982	30	INTRON	INTRON	RBM19	ENSG00000122965.11	ENST00000545145.6	protein_coding	protein_coding	protein_coding	protein_coding	3	40	2	2.27238	2.51005	2.74772	0.0161808	0.0142192	0.103638	0.101453
chr3	155931164	155931264	1537747	0	+	0.44	(0.408,0.44]	chr3	160158	54	INTRON	INTRON	GMPS	ENSG00000163655.16	ENST00000496455.7:ENST00000295920.7	protein_coding	protein_coding	protein_coding	protein_coding	3	46	2	1.81572	2.510045	3.20437	0.0626779	0.00306596	0.175915	0.0509893
chr18	9937066	9937166	6873580	0	+	0.34	(0.32,0.35]	chr18	680890	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	VAPA	ENSG00000101558.14	ENST00000400000.7:ENST00000340541.4:ENST00000584796.5:ENST00000583879.5:ENST00000583475.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	15	254	2	2.1554	2.5099850000000004	2.86457	0.00323492	1.19851e-5	0.0507251	0.00256782
chr11	76476935	76477035	4835824	0	+	0.27	[0,0.28]	chr11	451075	37	INTRON	INTRON	EMSY	ENSG00000158636.17	ENST00000427574.6:ENST00000695367.1:ENST00000334736.7:ENST00000524490.5:ENST00000533972.5:ENST00000525038.5:ENST00000524767.5:ENST00000525919.5:ENST00000533248.5:ENST00000529032.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	48	2	2.38757	2.509975	2.63238	0.0552962	0.0259691	0.165463	0.133676
chr1	28888901	28889000	58697	0	+	0.545455	(0.515,0.57]	chr1	7613	13	INTRON	INTRON	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000647918.1:ENST00000646800.1:ENST00000644342.1:ENST00000646189.1:ENST00000482464.6:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	47	2	1.81744	2.50992	3.2024	0.031028	0.00322022	0.143457	0.0507087
chr7	87177553	87177652	3345887	0	+	0.343434	(0.32,0.35]	chr7	311675	25	INTRON	INTRON	DMTF1	ENSG00000135164.19	ENST00000413276.6:ENST00000447863.5:ENST00000579677.5:ENST00000425406.5:ENST00000547146.6:ENST00000579850.5:ENST00000331242.12:ENST00000430405.7:ENST00000432937.6:ENST00000584619.5:ENST00000394703.9:ENST00000412139.6:ENST00000425705.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	64	2	1.64769	2.509895	3.3721	0.0578603	0.00182912	0.167723	0.0396683
chr17	81210517	81210617	6847459	0	-	0.5	(0.476,0.515]	chr17	677847	11	INTRON	INTRON	CEP131	ENSG00000141577.14	ENST00000374782.7:ENST00000269392.8:ENST00000450824.7:ENST00000575907.5	protein_coding	protein_coding	protein_coding	protein_coding	3	45	2	2.32001	2.5098399999999996	2.69967	0.0195838	0.0136217	0.109483	0.101682
chr2	170929941	170930041	916398	0	+	0.49	(0.476,0.515]	chr2	100862	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	GORASP2	ENSG00000115806.13	ENST00000471559.5:ENST00000444801.5:ENST00000234160.5:ENST00000493692.5:ENST00000497674.5:ENST00000455067.5:ENST00000454751.5:ENST00000442798.5:ENST00000497928.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	45	2	2.32001	2.5098399999999996	2.69967	0.0195838	0.0136217	0.109483	0.101682
chr15	30651514	30651613	5992533	0	+	0.464646	(0.44,0.476]	chr15	569759	21	INTRON	INTRON	ENSG00000284906:ENSG00000285035	ENSG00000284906.3:ENSG00000285035.2	ENST00000685924.1:ENST00000563110.6:ENST00000642399.2:ENST00000566548.5	protein_coding	protein_coding	protein_coding:transcribed_unprocessed_pseudogene	protein_coding:nonsense_mediated_decay:processed_transcript:transcribed_unprocessed_pseudogene	14	189	2	2.39802	2.509835	2.62165	3.987e-4	1.62146e-4	0.0185763	0.0109774
chr6	13699784	13699884	3059106	0	-	0.45	(0.44,0.476]	chr6	284548	25	INTRON	INTRON	RANBP9	ENSG00000010017.13	ENST00000011619.6	protein_coding	protein_coding	protein_coding	protein_coding	5	64	2	2.15726	2.509785	2.86231	0.012214	0.00508124	0.0910127	0.0646039
chr3	179258149	179258248	1878239	0	-	0.434343	(0.408,0.44]	chr3	187618	67	INTRON	INTRON	KCNMB3	ENSG00000171121.17	ENST00000485523.5:ENST00000497599.5:ENST00000392686.6:ENST00000349697.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	46	2	2.05947	2.50977	2.96007	0.0333232	0.00753901	0.134145	0.0773151
chr2	108779102	108779200	848032	0	+	0.346939	(0.32,0.35]	chr2	94911	15	INTRON	INTRON	RANBP2	ENSG00000153201.16	ENST00000283195.11	protein_coding	protein_coding	protein_coding	protein_coding	2	39	2	2.30673	2.50971	2.71269	0.0584434	0.0181461	0.167723	0.114853
chr5	255373	255465	2312597	0	+	0.336957	(0.32,0.35]	chr5	223695	5	INTRON	INTRON	SDHA	ENSG00000073578.18	ENST00000504309.5:ENST00000510361.5:ENST00000264932.11:ENST00000514027.5:ENST00000515752.5:ENST00000511810.5:ENST00000515815.5:ENST00000509082.1:ENST00000503674.5:ENST00000509564.1:ENST00000507522.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	39	2	2.30673	2.50971	2.71269	0.0584434	0.0181461	0.167723	0.114853
chr16	21499481	21499581	6461348	0	-	0.33	(0.32,0.35]	chr16	623371	115	INTRON	INTRON	SMG1P3	ENSG00000180747.15	ENST00000522480.5:ENST00000522841.6:ENST00000437413.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	2	39	2	2.37794	2.509615	2.64129	0.0498601	0.0222819	0.156383	0.124303
chr6	140213666	140213766	2968592	0	+	0.33	(0.32,0.35]	chr6	279015	646	INTRON	INTRON	ENSG00000288714	ENSG00000288714.1	ENST00000683950.1	lncRNA	lncRNA	lncRNA	lncRNA	2	39	2	2.37794	2.509615	2.64129	0.0498601	0.0222819	0.156383	0.124303
chr7	158785913	158786013	3689372	0	-	0.35	(0.32,0.35]	chr7	342393	122	INTRON	INTRON	ESYT2	ENSG00000117868.18	ENST00000251527.10:ENST00000275418.13:ENST00000652148.1:ENST00000483958.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	39	2	2.37794	2.509615	2.64129	0.0498601	0.0222819	0.156383	0.124303
chr21	6657419	6657519	7425746	0	-	0.36	(0.35,0.378]	chr21	757494	192	INTRON	INTRON	ENSG00000280145	ENSG00000280145.3	ENST00000625185.3:ENST00000623106.3:ENST00000624846.3:ENST00000623313.1:ENST00000624965.1	lncRNA	lncRNA	lncRNA	lncRNA	4	60	2	1.56287	2.50954	3.45621	0.0697648	0.0011842	0.184298	0.031662
chr7	156880072	156880172	3687887	0	-	0.36	(0.35,0.378]	chr7	342096	428	INTRON	INTRON	LMBR1	ENSG00000105983.23	ENST00000353442.10:ENST00000415428.5:ENST00000454132.5:ENST00000434503.5:ENST00000430278.5:ENST00000434278.5:ENST00000444719.5:ENST00000461469.5:ENST00000414218.1:ENST00000434453.1:ENST00000498034.5:ENST00000433968.5:ENST00000485985.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	60	2	1.56287	2.50954	3.45621	0.0697648	0.0011842	0.184298	0.031662
chr8	31077184	31077284	3728374	0	+	0.37	(0.35,0.378]	chr8	346564	5	INTRON	INTRON	WRN	ENSG00000165392.11	ENST00000650667.1:ENST00000298139.7:ENST00000651642.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	110	2	2.44961	2.509375	2.56914	0.00254279	0.0014359	0.0448135	0.0347139
chr20	57392151	57392229	7288772	0	+	0.602564	(0.57,1]	chr20	741589	4	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RBM38	ENSG00000132819.17	ENST00000356208.10:ENST00000440234.6:ENST00000342690.4:ENST00000344785.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	44	2	2.2837	2.5093449999999997	2.73499	0.00256797	0.00237434	0.0466761	0.0438057
chr3	177031069	177031167	1870744	0	-	0.387755	(0.378,0.408]	chr3	187282	34	INTRON	INTRON	TBL1XR1	ENSG00000177565.18	ENST00000636864.1:ENST00000457928.7:ENST00000430069.5:ENST00000637659.1:ENST00000673974.1:ENST00000631253.2:ENST00000352800.10:ENST00000422442.6:ENST00000626758.1:ENST00000636348.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	11	163	2	2.24395	2.5093199999999998	2.77469	0.0027044	5.92549e-5	0.0467523	0.00631599
chr18	11852597	11852694	6874221	0	+	0.28866000000000003	(0.28,0.32]	chr18	681005	6	UTR3	UTR3:EXON_MRNA	CHMP1B	ENSG00000255112.3	ENST00000526991.3	protein_coding	protein_coding	protein_coding	protein_coding	6	113	2	2.17756	2.509315	2.84107	0.0130851	6.40806e-4	0.0934394	0.0228915
chr1	50851832	50851932	451171	0	-	0.28	[0,0.28]	chr1	54261	498	INTRON	INTRON	FAF1	ENSG00000185104.21	ENST00000396153.7:ENST00000487898.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	66	2	2.06132	2.509305	2.95729	0.0408268	0.0101824	0.1451	0.089002
chr16	1368846	1368944	6427505	0	-	0.326531	(0.32,0.35]	chr16	617799	6	INTRON	INTRON	UNKL	ENSG00000059145.19	ENST00000389221.9:ENST00000248104.11:ENST00000403703.5:ENST00000674376.1:ENST00000397464.5:ENST00000508903.7:ENST00000402641.6:ENST00000513783.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	64	2	1.60297	2.509255	3.41554	0.0647328	0.00153152	0.179192	0.0361484
chr22	21825138	21825238	7560961	0	-	0.53	(0.515,0.57]	chr22	773388	169	INTRON	INTRON	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	9	110	2	2.43927	2.509195	2.57912	7.64103e-4	6.01485e-4	0.0253443	0.0223465
chr12	121796542	121796642	5439435	0	-	0.6	(0.57,1]	chr12	520127	3	SS3_PROX	SS3_PROX:INTRON	RHOF:LINC01089	ENSG00000139725.8:ENSG00000212694.8	ENST00000546227.5:ENST00000541657.5:ENST00000545544.1:ENST00000429892.5:ENST00000542933.5:ENST00000537157.5:ENST00000428029.6:ENST00000541694.5:ENST00000543167.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA:processed_transcript	7	49	2	2.00153	2.509125	3.01672	0.00529543	5.94133e-4	0.063668	0.0221865
chr16	29585301	29585401	6471453	0	-	0.45	(0.44,0.476]	chr16	625297	156	INTRON	INTRON	ENSG00000288632:SMG1P2	ENSG00000288632.1:ENSG00000205534.6	ENST00000675579.1:ENST00000566127.1	lncRNA	lncRNA	lncRNA:transcribed_unprocessed_pseudogene	lncRNA:transcribed_unprocessed_pseudogene	6	85	2	2.50256	2.5090500000000002	2.51554	0.00777207	0.00102082	0.0757731	0.0294041
chr2	53960161	53960261	1120470	0	-	0.5	(0.476,0.515]	chr2	120102	105	INTRON	INTRON	PSME4	ENSG00000068878.15	ENST00000404125.6:ENST00000389993.7:ENST00000481518.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	54	2	2.01953	2.5090250000000003	2.99852	0.0163662	0.0077575	0.109586	0.0757402
chr10	68967896	68967992	4443610	0	+	0.479167	(0.476,0.515]	chr10	409857	3	INTRON	INTRON	DDX21	ENSG00000165732.14	ENST00000685106.1:ENST00000687162.1:ENST00000684824.1:ENST00000354185.9:ENST00000686528.1:ENST00000690650.1:ENST00000690316.1:ENST00000620315.2:ENST00000685513.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	75	2	1.48441	2.5090149999999998	3.53362	0.0315624	0.00102391	0.144381	0.029231300000000002
chr9	83666531	83666629	4272662	0	-	0.357143	(0.35,0.378]	chr9	392949	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	UBQLN1	ENSG00000135018.14	ENST00000376395.9:ENST00000533705.5:ENST00000257468.11:ENST00000526134.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	113	2	2.25449	2.50901	2.76353	0.00343059	0.00124584	0.0517761	0.0328543
chr3	196047190	196047290	1897177	0	-	0.37	(0.35,0.378]	chr3	189884	196	INTRON	INTRON	TFRC	ENSG00000072274.13	ENST00000426789.5	protein_coding	protein_coding	protein_coding	protein_coding	3	53	2	2.4475	2.5089949999999996	2.57049	0.0262669	0.0106974	0.133676	0.0862205
chr1	32674674	32674773	66079	0	+	0.313131	(0.28,0.32]	chr1	8465	7	INTRON	INTRON	RBBP4	ENSG00000162521.19	ENST00000414241.7:ENST00000373493.10:ENST00000492348.6:ENST00000373485.5:ENST00000458695.6:ENST00000463378.5:ENST00000460669.5:ENST00000482190.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	120	2	1.84751	2.508975	3.17044	0.0162455	5.14622e-4	0.101453	0.0203753
chr10	30435533	30435628	4415838	0	+	0.421053	(0.408,0.44]	chr10	407284	4	INTRON	INTRON	MAP3K8	ENSG00000107968.10	ENST00000542547.5:ENST00000415139.5:ENST00000263056.6:ENST00000375322.2:ENST00000413724.5	protein_coding	protein_coding	protein_coding	protein_coding	4	55	2	1.81759	2.508965	3.20034	0.0316273	0.00398025	0.144405	0.0549214
chr1	110039723	110039823	181952	0	+	0.55	(0.515,0.57]	chr1	20133	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	STRIP1	ENSG00000143093.15	ENST00000369796.5:ENST00000369795.8:ENST00000485775.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	63	2	2.28534	2.50896	2.73258	0.0061678	0.00260192	0.067653	0.0470772
chr19	1225485	1225582	6994404	0	+	0.56701	(0.515,0.57]	chr19	692934	19	UTR3	UTR3:EXON_MRNA:INTRON	STK11	ENSG00000118046.17	ENST00000326873.12:ENST00000589152.5:ENST00000585465.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	63	2	2.28534	2.50896	2.73258	0.0061678	0.00260192	0.067653	0.0470772
chr15	63791445	63791545	6200480	0	-	0.35	(0.32,0.35]	chr15	591445	105	INTRON	INTRON	HERC1	ENSG00000103657.14	ENST00000443617.7:ENST00000561400.1:ENST00000559886.1:ENST00000558532.1:ENST00000560462.1:ENST00000560316.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	53	2	1.99307	2.5088850000000003	3.0247	0.04271	0.00671684	0.148082	0.0738715
chr3	6570678	6570777	1356949	0	+	0.494949	(0.476,0.515]	chr3	142512	120	INTRON	INTRON	ENSG00000189229	ENSG00000189229.12	ENST00000433639.1:ENST00000655754.1:ENST00000653839.1:ENST00000662846.1:ENST00000414438.2:ENST00000658468.1:ENST00000669512.1:ENST00000667028.1:ENST00000655541.1:ENST00000668643.1:ENST00000671568.1:ENST00000671036.1:ENST00000669798.1:ENST00000655753.1:ENST00000655856.1:ENST00000658398.1:ENST00000661518.1:ENST00000661279.1:ENST00000655495.1:ENST00000663041.1:ENST00000659827.1:ENST00000667716.1:ENST00000662508.1:ENST00000668416.1:ENST00000658133.1:ENST00000342990.4:ENST00000660054.1:ENST00000671370.1	lncRNA	lncRNA	lncRNA	lncRNA	3	47	2	2.365	2.50884	2.65268	0.0201975	0.0128901	0.121243	0.0926667
chrX	136852067	136852167	7897392	0	-	0.5	(0.476,0.515]	chrX	804139	31	INTRON	INTRON	RBMX	ENSG00000147274.14	ENST00000561733.5	protein_coding	processed_transcript	protein_coding	processed_transcript	3	47	2	2.365	2.50884	2.65268	0.0201975	0.0128901	0.121243	0.0926667
chr10	63347679	63347779	4634207	0	-	0.51	(0.476,0.515]	chr10	426226	786	INTRON	INTRON	JMJD1C	ENSG00000171988.20	ENST00000399262.7:ENST00000633035.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	58	2	2.21025	2.50877	2.80729	0.0126008	0.00913757	0.0980703	0.0812335
chrX	48463576	48463673	7815393	0	-	0.463918	(0.44,0.476]	chrX	796682	2	INTRON	INTRON	SLC38A5	ENSG00000017483.16	ENST00000595796.5:ENST00000619100.4:ENST00000620913.5:ENST00000497336.1:ENST00000494034.5:ENST00000440085.5:ENST00000441948.5:ENST00000413668.5:ENST00000416711.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	85	2	1.92704	2.508715	3.09039	0.0128054	7.4601e-4	0.0990564	0.0251072
chr1	109378982	109379081	520830	0	-	0.50505	(0.476,0.515]	chr1	61195	90	INTRON	INTRON	SORT1	ENSG00000134243.12	ENST00000538502.5:ENST00000256637.8:ENST00000493736.5:ENST00000482236.5:ENST00000633956.1:ENST00000471996.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	34	2	2.13854	2.5086649999999997	2.87879	0.0776563	0.00999149	0.196285	0.0879541
chr17	59821958	59822057	6643550	0	+	0.484848	(0.476,0.515]	chr17	648772	38	INTRON	INTRON	VMP1	ENSG00000062716.13	ENST00000262291.9:ENST00000592619.5:ENST00000591877.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	34	2	2.13854	2.5086649999999997	2.87879	0.0776563	0.00999149	0.196285	0.0879541
chr7	6704159	6704235	3478533	0	-	0.486842	(0.476,0.515]	chr7	325502	1	EXON_LNCRNA	EXON_LNCRNA:INTRON	ZNF12	ENSG00000164631.19	ENST00000405858.6:ENST00000342651.9:ENST00000394917.3:ENST00000491565.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	34	2	2.13854	2.5086649999999997	2.87879	0.0776563	0.00999149	0.196285	0.0879541
chr8	102649745	102649842	4012768	0	-	0.309278	(0.28,0.32]	chr8	367242	11	UTR3	UTR3:EXON_MRNA	KLF10	ENSG00000155090.15	ENST00000285407.11:ENST00000395884.3	protein_coding	protein_coding	protein_coding	protein_coding	3	57	2	2.1895	2.5085949999999997	2.82769	0.0227063	0.0169391	0.124921	0.103888
chr14	30570736	30570836	5674501	0	+	0.45	(0.44,0.476]	chr14	540499	95	INTRON	INTRON	G2E3	ENSG00000092140.16	ENST00000206595.11:ENST00000438909.6:ENST00000544007.5:ENST00000550944.5:ENST00000552488.1:ENST00000648008.1:ENST00000553504.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	62	2	1.84134	2.50853	3.17572	0.0175428	0.00427037	0.11319	0.0573912
chr6	151002444	151002543	2999250	0	+	0.575758	(0.57,1]	chr6	280599	169	INTRON	INTRON	MTHFD1L	ENSG00000120254.16	ENST00000611279.4:ENST00000367321.8:ENST00000618312.4:ENST00000478643.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	53	2	1.80787	2.50852	3.20917	0.0086124	2.02775e-4	0.0838082	0.0129814
chr2	69894793	69894893	805288	0	+	0.56	(0.515,0.57]	chr2	89869	3	SS3_PROX	SS3_PROX:INTRON	SNRNP27	ENSG00000124380.11	ENST00000244227.8:ENST00000409116.5:ENST00000450162.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	39	2	2.32836	2.5083450000000003	2.68833	0.0184931	0.0126662	0.108861	0.0982897
chr7	116913610	116913707	3385887	0	+	0.515464	(0.515,0.57]	chr7	317087	11	INTRON	INTRON	CAPZA2	ENSG00000198898.15	ENST00000361183.8:ENST00000449080.5:ENST00000426421.5:ENST00000465607.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	39	2	2.32836	2.5083450000000003	2.68833	0.0184931	0.0126662	0.108861	0.0982897
chr12	102153270	102153368	5205195	0	+	0.459184	(0.44,0.476]	chr12	492829	11	INTRON	INTRON	PARPBP	ENSG00000185480.12	ENST00000327680.7:ENST00000541394.5:ENST00000543784.5:ENST00000392911.6:ENST00000541668.5:ENST00000457614.6:ENST00000417507.6:ENST00000412715.3:ENST00000535811.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	92	2	2.22103	2.50834	2.79565	0.00776319	7.94781e-4	0.0787356	0.0260201
chr20	47302816	47302915	7348970	0	-	0.444444	(0.44,0.476]	chr20	749336	35	INTRON	INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000468376.2:ENST00000435836.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	75	2	2.41757	2.508225	2.59888	0.00487719	0.00417342	0.0640618	0.057064
chrX	48255732	48255832	7658165	0	+	0.45	(0.44,0.476]	chrX	783659	3	SS5_PROX	SS5_PROX:INTRON	SSX1	ENSG00000126752.8	ENST00000376919.4	protein_coding	protein_coding	protein_coding	protein_coding	5	63	2	1.60467	2.508215	3.41176	0.0411383	0.00130987	0.1451	0.0333932
chr2	15466729	15466828	1072205	0	-	0.434343	(0.408,0.44]	chr2	114378	46	INTRON	INTRON	NBAS	ENSG00000151779.13	ENST00000281513.10	protein_coding	protein_coding	protein_coding	protein_coding	3	48	2	2.27698	2.5081949999999997	2.73941	0.0583528	0.002744	0.167723	0.0484022
chr7	72923414	72923513	3330234	0	+	0.515152	(0.476,0.515]	chr7	309573	33	INTRON	INTRON	POM121	ENSG00000196313.13	ENST00000627934.3:ENST00000395270.5	protein_coding	protein_coding	protein_coding	protein_coding	6	69	2	1.48272	2.50817	3.53362	0.0410274	0.00102391	0.161534	0.029231300000000002
chr10	68763289	68763389	4442709	0	+	0.46	(0.44,0.476]	chr10	409684	17	INTRON	INTRON	CCAR1	ENSG00000060339.14	ENST00000630771.2:ENST00000543719.5:ENST00000541012.5:ENST00000265872.11:ENST00000539539.5:ENST00000543229.5:ENST00000536012.5:ENST00000543225.5:ENST00000540210.5:ENST00000479143.2:ENST00000543706.1:ENST00000539250.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	73	2	2.30673	2.508165	2.7096	0.0055175	0.00376205	0.0672816	0.0539118
chr1	110040134	110040209	181957	0	+	0.32	(0.28,0.32]	chr1	20138	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	STRIP1	ENSG00000143093.15	ENST00000369796.5:ENST00000369795.8:ENST00000485775.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	58	2	2.09794	2.50813	2.91832	0.0340483	0.0102484	0.134863	0.089002
chr4	128814968	128815067	2044318	0	+	0.282828	(0.28,0.32]	chr4	202988	26	INTRON	INTRON	JADE1	ENSG00000077684.16	ENST00000226319.11:ENST00000511647.5:ENST00000452328.6:ENST00000504089.5:ENST00000512960.5:ENST00000503785.5:ENST00000514740.1:ENST00000610919.4:ENST00000510308.5:ENST00000511925.5:ENST00000413543.6:ENST00000611140.4:ENST00000507833.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	58	2	2.09794	2.50813	2.91832	0.0340483	0.0102484	0.134863	0.089002
chr17	75208720	75208820	6674289	0	+	0.36	(0.35,0.378]	chr17	651347	1	SS5_PROX	SS5_PROX:INTRON	NUP85	ENSG00000125450.11	ENST00000583569.5:ENST00000245544.9:ENST00000583948.5:ENST00000579324.5:ENST00000449421.6:ENST00000581104.5:ENST00000579298.5:ENST00000583548.1:ENST00000577208.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	80	2	2.10109	2.508125	2.91516	0.014685	0.0013628	0.0983813	0.0339121
chr6	147706167	147706267	2991058	0	+	0.37	(0.35,0.378]	chr6	280167	133	INTRON	INTRON	ENSG00000227681	ENSG00000227681.5	ENST00000427015.1:ENST00000432506.5:ENST00000442094.5:ENST00000434985.1	lncRNA	lncRNA	lncRNA	lncRNA	5	80	2	2.10109	2.508125	2.91516	0.014685	0.0013628	0.0983813	0.0339121
chr17	36504499	36504595	6759321	0	-	0.5625	(0.515,0.57]	chr17	664497	6	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	MYO19	ENSG00000278259.5	ENST00000614623.5:ENST00000610992.4:ENST00000621550.4:ENST00000610930.4:ENST00000611622.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	39	2	2.11313	2.50812	2.90311	0.0256725	0.0094233	0.133676	0.0817766
chr3	17715749	17715849	1630165	0	-	0.52	(0.515,0.57]	chr3	168275	135	INTRON	INTRON	TBC1D5	ENSG00000131374.15	ENST00000253692.11:ENST00000696125.1:ENST00000414318.2:ENST00000429383.8:ENST00000415814.6:ENST00000452492.6:ENST00000412981.5:ENST00000428355.5:ENST00000425944.5:ENST00000430169.5:ENST00000445294.5:ENST00000414349.5:ENST00000443499.6:ENST00000444756.5:ENST00000497531.5:ENST00000443386.5:ENST00000446863.5:ENST00000444471.5:ENST00000481396.5:ENST00000423331.6:ENST00000485432.1:ENST00000471679.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	39	2	2.11313	2.50812	2.90311	0.0256725	0.0094233	0.133676	0.0817766
chr7	2007612	2007712	3464670	0	-	0.57	(0.515,0.57]	chr7	324016	51	INTRON	INTRON	MAD1L1	ENSG00000002822.16	ENST00000406869.5:ENST00000399654.6:ENST00000402746.5:ENST00000265854.12:ENST00000438959.5:ENST00000444373.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	39	2	2.11313	2.50812	2.90311	0.0256725	0.0094233	0.133676	0.0817766
chr1	149807336	149807435	549362	0	-	0.515152	(0.476,0.515]	chr1	64486	14	INTRON	INTRON	H2BC18	ENSG00000203814.7	ENST00000545683.1:ENST00000420462.1:ENST00000469483.1:ENST00000620458.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	34	2	2.38442	2.50805	2.63168	0.0417472	0.0237106	0.161736	0.118716
chr16	3714433	3714533	6434447	0	-	0.51	(0.476,0.515]	chr16	619383	36	INTRON	INTRON	TRAP1	ENSG00000126602.11	ENST00000246957.10:ENST00000538171.5:ENST00000571804.5:ENST00000574941.5:ENST00000576106.5:ENST00000571011.1:ENST00000570403.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	34	2	2.38442	2.50805	2.63168	0.0417472	0.0237106	0.161736	0.118716
chr17	28622095	28622192	6744905	0	-	0.484536	(0.476,0.515]	chr17	662582	2	INTRON	INTRON	KIAA0100	ENSG00000007202.15	ENST00000528896.7:ENST00000544884.5:ENST00000389003.7	protein_coding	protein_coding	protein_coding	protein_coding	2	34	2	2.38442	2.50805	2.63168	0.0417472	0.0237106	0.161736	0.118716
chr22	47889054	47889154	7541959	0	+	0.48	(0.476,0.515]	chr22	770801	245	INTRON	INTRON	ENSG00000224271	ENSG00000224271.7	ENST00000664761.1:ENST00000650683.1:ENST00000651536.1:ENST00000651445.1:ENST00000650660.1:ENST00000651403.1:ENST00000652228.1:ENST00000651124.1:ENST00000651003.1:ENST00000651939.1:ENST00000652080.1:ENST00000651033.1:ENST00000651584.1	lncRNA	lncRNA	lncRNA	lncRNA	2	34	2	2.38442	2.50805	2.63168	0.0417472	0.0237106	0.161736	0.118716
chr3	38243178	38243278	1399342	0	+	0.5	(0.476,0.515]	chr3	146734	4	SS5_PROX	SS5_PROX:INTRON	OXSR1	ENSG00000172939.9	ENST00000446845.5:ENST00000311806.8:ENST00000467900.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	34	2	2.38442	2.50805	2.63168	0.0417472	0.0237106	0.161736	0.118716
chrX	286181	286278	7605313	0	+	0.494845	(0.476,0.515]	chrX	779390	15	INTRON	INTRON	PLCXD1	ENSG00000182378.15	ENST00000399012.6:ENST00000484611.7:ENST00000430923.7:ENST00000445062.6:ENST00000429181.6:ENST00000381657.8:ENST00000443019.6:ENST00000415337.6:ENST00000447472.6:ENST00000448477.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	34	2	2.38442	2.50805	2.63168	0.0417472	0.0237106	0.161736	0.118716
chr5	171389550	171389633	2546581	0	+	0.337349	(0.32,0.35]	chr5	243081	1	SS3_PROX	SS3_PROX:INTRON	NPM1	ENSG00000181163.14	ENST00000517671.5:ENST00000676613.1:ENST00000678186.1:ENST00000678267.1:ENST00000677297.1:ENST00000521672.6:ENST00000679190.1:ENST00000677467.1:ENST00000678280.1:ENST00000676625.1:ENST00000679006.1:ENST00000351986.10:ENST00000676504.1:ENST00000676589.1:ENST00000677357.1:ENST00000679233.1:ENST00000296930.10:ENST00000393820.2:ENST00000521260.2:ENST00000518587.2:ENST00000678774.1:ENST00000521710.2:ENST00000523339.1:ENST00000677600.1:ENST00000677741.1:ENST00000523622.1:ENST00000677325.1:ENST00000677672.1:ENST00000677907.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	141	2	2.27097	2.50802	2.74507	0.00347642	6.0554e-4	0.0540643	0.0226059
chr11	73982420	73982520	4985940	0	-	0.58	(0.57,1]	chr11	470969	3	SS5_PROX	SS5_PROX:INTRON	UCP2	ENSG00000175567.11	ENST00000663595.2:ENST00000310473.9:ENST00000536983.5:ENST00000543714.5:ENST00000542615.5:ENST00000541027.5:ENST00000539330.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	33	2	2.28103	2.5080099999999996	2.73499	0.0151554	0.00237434	0.108535	0.0438057
chr1	246143480	246143580	677067	0	-	0.5	(0.476,0.515]	chr1	79721	472	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000391836.3:ENST00000453676.5:ENST00000462422.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	75	2	1.44561	2.508005	3.5704	0.0359862	8.75056e-4	0.152355	0.0270926
chr15	84699690	84699790	6251863	0	-	0.5	(0.476,0.515]	chr15	596683	72	INTRON	INTRON	SEC11A	ENSG00000140612.14	ENST00000559729.5:ENST00000268220.12:ENST00000560266.5:ENST00000558134.5:ENST00000558217.5:ENST00000455959.7:ENST00000560409.5:ENST00000558196.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	74	2	1.83961	2.5079450000000003	3.17628	0.0314489	3.6008e-4	0.13151	0.0169207
chr11	756599	756696	4720429	0	+	0.515464	(0.515,0.57]	chr11	436400	2	INTRON	INTRON	TALDO1	ENSG00000177156.11	ENST00000528070.5:ENST00000528097.5:ENST00000530440.1:ENST00000319006.8:ENST00000530119.5:ENST00000533796.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	70	2	1.52078	2.50787	3.49496	0.0211248	9.61701e-4	0.122921	0.0282401
chr1	77719810	77719906	493730	0	-	0.5	(0.476,0.515]	chr1	58381	8	INTRON	INTRON	USP33	ENSG00000077254.14	ENST00000370794.7:ENST00000370793.5:ENST00000357428.5:ENST00000481579.5:ENST00000370792.7:ENST00000527390.1:ENST00000461986.5:ENST00000531637.5:ENST00000462192.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	121	2	2.24144	2.5078199999999997	2.7742	0.00122866	8.54322e-4	0.0325799	0.0267428
chr20	4014144	4014244	7309394	0	-	0.47	(0.44,0.476]	chr20	744300	394	INTRON	INTRON	RNF24	ENSG00000101236.17	ENST00000336095.10:ENST00000358395.11:ENST00000545616.2	protein_coding	protein_coding	protein_coding	protein_coding	7	101	2	2.35446	2.507745	2.66103	0.00536475	4.47456e-4	0.0642754	0.0191768
chr16	74599965	74600065	6525261	0	-	0.48	(0.476,0.515]	chr16	631842	368	INTRON	INTRON	GLG1	ENSG00000090863.12	ENST00000205061.9:ENST00000422840.7:ENST00000447066.6:ENST00000562090.5:ENST00000567951.5:ENST00000627032.2:ENST00000565260.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	154	2	2.18396	2.50765	2.83134	0.00209955	7.77209e-5	0.0413691	0.00735438
chr19	11090115	11090211	7016818	0	+	0.635417	(0.57,1]	chr19	697418	1	INTRON	INTRON	LDLR	ENSG00000130164.14	ENST00000557933.5:ENST00000558518.6:ENST00000545707.5:ENST00000535915.5:ENST00000455727.6:ENST00000557958.1:ENST00000560502.5:ENST00000558013.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	41	2	1.53189	2.50763	3.48337	0.0259412	6.20854e-4	0.121677	0.0223951
chr15	25406766	25406866	6121509	0	-	0.34	(0.32,0.35]	chr15	582898	3	SS5_PROX	SS5_PROX:INTRON	UBE3A	ENSG00000114062.22	ENST00000648336.2:ENST00000438097.6:ENST00000635914.1:ENST00000638155.1:ENST00000637886.1:ENST00000638011.1:ENST00000649550.1:ENST00000650110.1:ENST00000630424.2:ENST00000566215.5:ENST00000428984.6:ENST00000675177.1:ENST00000675593.1:ENST00000625778.3:ENST00000675000.1:ENST00000626793.2:ENST00000628733.2:ENST00000630907.2:ENST00000675038.1:ENST00000630607.2:ENST00000629886.2:ENST00000628267.2:ENST00000629252.2:ENST00000628890.1:ENST00000625681.2:ENST00000626589.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	76	2	2.27097	2.50756	2.74415	0.0198267	0.00347642	0.109608	0.0540643
chr14	35026511	35026609	5691493	0	+	0.428571	(0.408,0.44]	chr14	541316	31	INTRON	INTRON	SRP54	ENSG00000100883.13	ENST00000556994.5:ENST00000678836.1:ENST00000546080.6:ENST00000555746.6:ENST00000678963.1:ENST00000678477.1:ENST00000677621.1:ENST00000678519.1:ENST00000678627.1:ENST00000216774.11:ENST00000555557.5:ENST00000678274.1:ENST00000677647.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	64	2	2.18807	2.5075200000000004	2.82697	0.0708044	4.95662e-4	0.184528	0.0201536
chr8	102392393	102392492	4012553	0	-	0.272727	[0,0.28]	chr8	367237	304	INTRON	INTRON	UBR5	ENSG00000104517.13	ENST00000520539.6:ENST00000220959.8:ENST00000521922.5	protein_coding	protein_coding	protein_coding	protein_coding	3	65	2	2.3719	2.507495	2.64309	0.0308646	0.0139689	0.13151	0.10247
chr22	38502376	38502475	7588054	0	-	0.393939	(0.378,0.408]	chr22	776771	7	INTRON	INTRON	DDX17	ENSG00000100201.23	ENST00000403230.3:ENST00000396821.8:ENST00000216019.11:ENST00000432525.5:ENST00000467279.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	12	180	2	2.38854	2.507455	2.62637	5.74431e-4	2.62853e-4	0.0217621	0.0149561
chr8	92843634	92843734	3990542	0	-	0.29	(0.28,0.32]	chr8	365358	572	INTRON	INTRON	FLJ46284	ENSG00000248858.7	ENST00000504861.2	lncRNA	lncRNA	lncRNA	lncRNA	7	96	2	1.6789	2.5074300000000003	3.33596	0.017572	0.00342993	0.11319	0.0517761
chr13	59741646	59741746	5600119	0	-	0.43	(0.408,0.44]	chr13	535387	456	INTRON	INTRON	DIAPH3	ENSG00000139734.19	ENST00000400324.9:ENST00000649952.1:ENST00000377908.6:ENST00000400319.5:ENST00000400320.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	35	2	2.2957	2.5074050000000003	2.71911	0.0516458	0.0189489	0.176696	0.108861
chr5	143363508	143363608	2742128	0	-	0.44	(0.408,0.44]	chr5	258577	490	INTRON	INTRON	NR3C1	ENSG00000113580.15	ENST00000343796.6:ENST00000394464.7:ENST00000415690.6:ENST00000424646.6:ENST00000504572.5:ENST00000394466.6:ENST00000231509.7:ENST00000652686.1:ENST00000503201.1:ENST00000504336.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	35	2	2.2957	2.5074050000000003	2.71911	0.0516458	0.0189489	0.176696	0.108861
chr17	1374239	1374339	6699349	0	-	0.52	(0.515,0.57]	chr17	655552	41	INTRON	INTRON	YWHAE	ENSG00000108953.17	ENST00000264335.13:ENST00000571732.5:ENST00000573026.1:ENST00000573196.5:ENST00000575977.1:ENST00000469398.5:ENST00000486241.1:ENST00000489287.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	63	2	2.43783	2.5074	2.57697	0.00916404	0.00153959	0.0812949	0.0362709
chr10	7387945	7388045	4552708	0	-	0.43	(0.408,0.44]	chr10	420261	56	INTRON	INTRON	SFMBT2	ENSG00000198879.13	ENST00000397167.6:ENST00000361972.8:ENST00000684547.1:ENST00000683762.1:ENST00000673876.1:ENST00000682896.1:ENST00000379713.8:ENST00000682101.1:ENST00000379711.2:ENST00000682043.1:ENST00000682180.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	46	2	2.49983	2.507375	2.51492	0.0329839	0.00713527	0.133816	0.0756118
chr17	29400448	29400547	6585736	0	+	0.414141	(0.408,0.44]	chr17	640373	91	INTRON	INTRON	ENSG00000266111:TAOK1	ENSG00000266111.2:ENSG00000160551.12	ENST00000584958.2:ENST00000261716.8:ENST00000583121.5:ENST00000587277.1:ENST00000536202.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	3	46	2	2.49983	2.507375	2.51492	0.0329839	0.00713527	0.133816	0.0756118
chr2	98456481	98456581	832995	0	+	0.43	(0.408,0.44]	chr2	93413	110	INTRON	INTRON	INPP4A	ENSG00000040933.16	ENST00000409016.8:ENST00000409851.8:ENST00000074304.9:ENST00000409463.5:ENST00000409540.7	protein_coding	protein_coding	protein_coding	protein_coding	3	46	2	2.49983	2.507375	2.51492	0.0329839	0.00713527	0.133816	0.0756118
chrX	44923984	44924084	7649110	0	+	0.41	(0.408,0.44]	chrX	782726	496	INTRON	INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000675440.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000621147.5:ENST00000475233.1:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	46	2	2.49983	2.507375	2.51492	0.0329839	0.00713527	0.133816	0.0756118
chr5	104289175	104289275	2443307	0	+	0.5	(0.476,0.515]	chr5	234410	1839	INTRON	INTRON	LINC02163	ENSG00000251026.2	ENST00000662211.1:ENST00000666145.1	lncRNA	lncRNA	lncRNA	lncRNA	5	73	2	2.24612	2.507335	2.76855	0.00799949	0.00244302	0.0766625	0.0456956
chr15	90875381	90875481	6102003	0	+	0.49	(0.476,0.515]	chr15	581004	4	SS3_PROX	SS3_PROX:INTRON	FURIN	ENSG00000140564.13	ENST00000268171.8:ENST00000610579.4:ENST00000680053.1:ENST00000618099.4	protein_coding	protein_coding	protein_coding	protein_coding	5	63	2	2.07116	2.5073299999999996	2.9435	0.00929849	0.00731321	0.0817766	0.076234
chr2	31867389	31867486	1089672	0	-	0.350515	(0.35,0.378]	chr2	116850	25	UTR3	UTR3:EXON_MRNA	MEMO1	ENSG00000162959.14	ENST00000295065.9	protein_coding	protein_coding	protein_coding	protein_coding	4	59	2	1.97646	2.5073	3.03814	0.0193942	0.00767003	0.119831	0.075364
chr10	77990153	77990253	4654956	0	-	0.36	(0.35,0.378]	chr10	428829	36	INTRON	INTRON	POLR3A	ENSG00000148606.14	ENST00000372371.8	protein_coding	protein_coding	protein_coding	protein_coding	5	68	2	1.64283	2.5072900000000002	3.37175	0.034896	0.00236696	0.148998	0.043778
chr5	77773104	77773204	2647202	0	-	0.36	(0.35,0.378]	chr5	251578	579	INTRON	INTRON	TBCA	ENSG00000171530.15	ENST00000380377.9:ENST00000306388.10:ENST00000520361.5:ENST00000651106.1:ENST00000518338.6:ENST00000522370.1:ENST00000520039.1	protein_coding	protein_coding	protein_coding	protein_coding	5	68	2	1.64283	2.5072900000000002	3.37175	0.034896	0.00236696	0.148998	0.043778
chr20	47238081	47238177	7348311	0	-	0.322917	(0.32,0.35]	chr20	749266	9	EXON_LNCRNA	EXON_LNCRNA:INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000467200.6:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000468376.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	150	2	2.43005	2.507275	2.5845	0.00245997	4.12988e-4	0.0446195	0.0181365
chr1	40729768	40729868	82746	0	+	0.49	(0.476,0.515]	chr1	10736	56	INTRON	INTRON	NFYC	ENSG00000066136.21	ENST00000467203.5:ENST00000424419.6:ENST00000427410.6:ENST00000447388.8:ENST00000425457.6:ENST00000453631.5:ENST00000456393.6:ENST00000372654.5:ENST00000534399.5:ENST00000372653.5:ENST00000372669.8:ENST00000372652.5:ENST00000372651.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	57	2	2.13573	2.50726	2.87879	0.0119549	0.00999149	0.0899583	0.0879541
chr1	40198245	40198344	80336	0	+	0.474747	(0.44,0.476]	chr1	10425	21	INTRON	INTRON	RLF	ENSG00000117000.9	ENST00000372771.5	protein_coding	protein_coding	protein_coding	protein_coding	9	122	2	1.94898	2.507255	3.06553	0.00609692	1.35514e-4	0.0676501	0.0100405
chr7	111205111	111205211	3620533	0	-	0.45	(0.44,0.476]	chr7	337093	2412	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	61	2	2.19078	2.5071450000000004	2.82351	0.0226089	0.00191049	0.117489	0.0403772
chr12	104291404	104291504	5210054	0	+	0.46	(0.44,0.476]	chr12	493209	3	SS5_PROX	SS5_PROX:INTRON	TXNRD1	ENSG00000198431.17	ENST00000525566.6:ENST00000526266.5:ENST00000503506.6:ENST00000526691.5:ENST00000531691.5:ENST00000526390.5:ENST00000531689.5:ENST00000529546.5:ENST00000529751.1:ENST00000528079.6:ENST00000526580.5:ENST00000529784.5:ENST00000524698.5:ENST00000527688.5:ENST00000527335.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	61	2	2.49823	2.506885	2.51554	0.00777207	0.00718224	0.0757731	0.0756118
chr19	1650869	1650949	7113100	0	-	0.6125	(0.57,1]	chr19	714664	2	SS5_PROX	SS5_PROX:INTRON	TCF3	ENSG00000071564.17	ENST00000344749.9:ENST00000262965.12:ENST00000588136.7:ENST00000453954.6:ENST00000395423.7:ENST00000586318.1	protein_coding	protein_coding	protein_coding	protein_coding	3	25	2	2.47993	2.5068799999999998	2.53383	0.02547	0.007207	0.12011	0.0756278
chr4	77067204	77067304	2165861	0	-	0.38	(0.378,0.408]	chr4	213634	4	INTRON	INTRON	CCNI	ENSG00000118816.11	ENST00000237654.9:ENST00000511943.5:ENST00000505609.5:ENST00000513774.1:ENST00000507788.2:ENST00000515790.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	72	2	1.82004	2.50686	3.19368	0.012605	0.00426861	0.0980801	0.0573912
chr6	10892278	10892377	2811793	0	+	0.444444	(0.44,0.476]	chr6	264548	3	INTRON	INTRON	SYCP2L	ENSG00000153157.13	ENST00000341041.8:ENST00000283141.11:ENST00000543878.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	45	2	2.27304	2.5068349999999997	2.74063	0.0176095	0.0158915	0.109464	0.105143
chr5	87392180	87392278	2668705	0	-	0.377551	(0.35,0.378]	chr5	252554	8	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	CCNH	ENSG00000134480.16	ENST00000645953.1:ENST00000646883.1:ENST00000505587.5	protein_coding	retained_intron	protein_coding	retained_intron:nonsense_mediated_decay	3	50	2	1.9755	2.50682	3.03814	0.0398617	0.00767003	0.161534	0.075364
chrX	74588949	74589049	7841688	0	-	0.39	(0.378,0.408]	chrX	799768	61	UTR3	UTR3:EXON_MRNA	RLIM	ENSG00000131263.13	ENST00000332687.11	protein_coding	protein_coding	protein_coding	protein_coding	3	47	2	2.41037	2.506665	2.60296	0.0267851	0.0100185	0.123349	0.0880217
chr20	38067151	38067250	7269218	0	+	0.454545	(0.44,0.476]	chr20	738712	5	INTRON	INTRON	RPRD1B	ENSG00000101413.12	ENST00000462548.6:ENST00000373433.9:ENST00000449186.2:ENST00000618318.1:ENST00000614670.1:ENST00000622494.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	73	2	2.10892	2.50666	2.9044	0.0132897	0.00132926	0.0944742	0.0335085
chr4	39869862	39869962	2131098	0	-	0.47	(0.44,0.476]	chr4	210127	4	SS3_PROX	SS3_PROX:INTRON	PDS5A	ENSG00000121892.15	ENST00000303538.13:ENST00000507020.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	73	2	2.10892	2.50666	2.9044	0.0132897	0.00132926	0.0944742	0.0335085
chrX	151970814	151970902	7908599	0	-	0.488636	(0.476,0.515]	chrX	804810	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GABRE	ENSG00000102287.19	ENST00000370328.4:ENST00000441219.5:ENST00000491339.1:ENST00000417300.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	18	236	2	2.0007	2.5066550000000003	3.01261	0.00123863	1.19238e-5	0.0322669	0.0025558
chr12	24844413	24844513	5296857	0	-	0.25	[0,0.28]	chr12	503847	18	INTRON	INTRON	BCAT1	ENSG00000060982.15	ENST00000261192.12:ENST00000538118.5:ENST00000342945.9:ENST00000539282.5:ENST00000539780.5:ENST00000544418.1:ENST00000612790.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:processed_transcript	2	48	2	2.20927	2.506615	2.80396	0.0794763	0.0161429	0.19979	0.109464
chr8	129538149	129538249	4060664	0	-	0.31	(0.28,0.32]	chr8	369648	276	INTRON	INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1:ENST00000676273.1:ENST00000667643.1:ENST00000668791.1:ENST00000663716.1:ENST00000663572.1:ENST00000676148.1:ENST00000667962.1:ENST00000674877.1:ENST00000675316.1:ENST00000674656.1:ENST00000446592.7:ENST00000667341.1:ENST00000675186.1:ENST00000652971.1:ENST00000661447.1:ENST00000674863.1:ENST00000675498.1:ENST00000675527.1:ENST00000676108.1:ENST00000657647.1:ENST00000675589.1:ENST00000675913.1:ENST00000675109.1:ENST00000671632.1:ENST00000671311.1:ENST00000676099.1:ENST00000660652.1:ENST00000675522.1:ENST00000675183.1:ENST00000658861.1:ENST00000663991.1:ENST00000675044.1:ENST00000675435.1:ENST00000674639.1:ENST00000676069.1:ENST00000675532.1:ENST00000674762.1:ENST00000523151.6:ENST00000675948.1:ENST00000665364.1:ENST00000657251.1:ENST00000675166.1:ENST00000674883.1:ENST00000675867.1:ENST00000674580.1:ENST00000675393.1:ENST00000520048.1:ENST00000674906.1:ENST00000676030.1:ENST00000670588.1:ENST00000675072.1:ENST00000664936.1:ENST00000652914.1:ENST00000657069.1	lncRNA	lncRNA	lncRNA	lncRNA	9	157	2	1.73843	2.506615	3.2748	0.0179591	6.71944e-5	0.1067	0.00678102
chr4	139063740	139063839	2246199	0	-	0.40404	(0.378,0.408]	chr4	219542	13	INTRON	INTRON	ELF2	ENSG00000109381.21	ENST00000394235.6:ENST00000686138.1:ENST00000379550.5:ENST00000358635.7:ENST00000379549.7:ENST00000510408.5:ENST00000512627.1:ENST00000514577.5:ENST00000504314.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	76	2	2.31181	2.5066100000000002	2.70141	0.00548372	0.00411614	0.0671431	0.0564981
chr2	55413035	55413135	1124330	0	-	0.46	(0.44,0.476]	chr2	120584	65	INTRON	INTRON	CCDC88A	ENSG00000115355.18	ENST00000263630.13:ENST00000436346.7:ENST00000336838.10:ENST00000642200.1:ENST00000413716.7:ENST00000643413.1:ENST00000647401.1:ENST00000645311.1:ENST00000646796.1:ENST00000645571.1:ENST00000645477.1:ENST00000645072.1:ENST00000644890.1:ENST00000644630.1:ENST00000647098.1:ENST00000642890.1:ENST00000647517.1:ENST00000645031.1:ENST00000645529.1:ENST00000644033.1:ENST00000644193.1:ENST00000647341.1:ENST00000644127.1:ENST00000644157.1:ENST00000471947.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	69	2	1.74644	2.506565	3.26669	0.0165016	0.00305435	0.110334	0.0493883
chr17	82571126	82571223	6693124	0	+	0.443299	(0.44,0.476]	chr17	654646	26	INTRON	INTRON	FOXK2	ENSG00000141568.21	ENST00000473637.6:ENST00000335255.10:ENST00000527313.6:ENST00000570585.1:ENST00000531030.5:ENST00000526383.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	56	2	1.98938	2.50652	3.02366	0.0198602	0.00603307	0.109608	0.0700813
chr7	152369268	152369368	3680626	0	-	0.4	(0.378,0.408]	chr7	341660	102	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000682301.1:ENST00000452749.2:ENST00000680867.1:ENST00000683800.1:ENST00000684278.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	138	2	2.06872	2.5064849999999996	2.94425	0.00895678	3.98376e-5	0.0800073	0.00512515
chr15	32637944	32638044	5995712	0	+	0.24	[0,0.28]	chr15	570017	2	UTR3	UTR3:EXON_MRNA	ARHGAP11A	ENSG00000198826.11	ENST00000565905.5:ENST00000361627.8	protein_coding	protein_coding	protein_coding	protein_coding	5	90	2	1.67675	2.50648	3.33621	0.0352695	0.00427056	0.150332	0.0573912
chr10	50584956	50585056	4620300	0	-	0.39	(0.378,0.408]	chr10	425452	647	INTRON	INTRON	SGMS1	ENSG00000198964.14	ENST00000429490.5:ENST00000361781.7:ENST00000619438.4:ENST00000609445.5:ENST00000608287.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	35	2	2.2259	2.506475	2.78705	0.0662381	0.0135539	0.181924	0.101363
chr17	36575359	36575458	6602164	0	+	0.393939	(0.378,0.408]	chr17	642571	72	INTRON	INTRON	GGNBP2	ENSG00000278311.5	ENST00000613102.5:ENST00000617860.4:ENST00000618837.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	35	2	2.2259	2.506475	2.78705	0.0662381	0.0135539	0.181924	0.101363
chr19	8460669	8460769	7010921	0	+	0.38	(0.378,0.408]	chr19	696143	47	INTRON	INTRON	HNRNPM	ENSG00000099783.12	ENST00000348943.7:ENST00000597813.5:ENST00000600092.5:ENST00000325495.9:ENST00000600806.5:ENST00000620401.4:ENST00000594907.5:ENST00000596984.5:ENST00000601645.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	35	2	2.2259	2.506475	2.78705	0.0662381	0.0135539	0.181924	0.101363
chr3	155842525	155842619	1844227	0	-	0.308511	(0.28,0.32]	chr3	185553	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	SLC33A1	ENSG00000169359.16	ENST00000643144.2:ENST00000359479.7:ENST00000468581.2:ENST00000646424.1:ENST00000644094.1:ENST00000642438.1:ENST00000644855.1:ENST00000475842.5:ENST00000496772.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	82	2	2.23291	2.506475	2.78004	0.0193244	0.00444008	0.108861	0.0610799
chr7	91947232	91947331	3351077	0	+	0.393939	(0.378,0.408]	chr7	312180	57	INTRON	INTRON	AKAP9	ENSG00000127914.19	ENST00000680534.1:ENST00000680513.1:ENST00000680072.1:ENST00000679821.1:ENST00000679554.1:ENST00000356239.8:ENST00000679521.1:ENST00000680181.1:ENST00000681722.1:ENST00000680766.1:ENST00000679448.1:ENST00000681412.1:ENST00000680047.1:ENST00000679474.1:ENST00000680952.1:ENST00000679457.1:ENST00000679722.1:ENST00000680074.1:ENST00000493453.1:ENST00000394564.5:ENST00000674381.2:ENST00000359028.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	35	2	2.2259	2.506475	2.78705	0.0662381	0.0135539	0.181924	0.101363
chr10	11542545	11542645	4555372	0	-	0.52	(0.515,0.57]	chr10	420447	104	INTRON	INTRON	USP6NL	ENSG00000148429.15	ENST00000609104.6:ENST00000379237.6	protein_coding	protein_coding	protein_coding	protein_coding	4	52	2	2.38476	2.506465	2.62817	0.0110593	0.004048	0.0873897	0.0578376
chr15	22580618	22580717	5975415	0	+	0.252525	[0,0.28]	chr15	568243	5	INTRON	INTRON	HERC2P2	ENSG00000276550.5	ENST00000619021.4:ENST00000690192.1:ENST00000614571.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	2	48	2	2.44242	2.506375	2.57033	0.0491024	0.0305273	0.155269	0.143385
chr6	47605864	47605964	2874862	0	+	0.27	[0,0.28]	chr6	272799	3	SS3_PROX	SS3_PROX:INTRON	CD2AP	ENSG00000198087.7	ENST00000359314.5	protein_coding	protein_coding	protein_coding	protein_coding	2	48	2	2.44242	2.506375	2.57033	0.0491024	0.0305273	0.155269	0.143385
chr11	68268678	68268778	4973294	0	-	0.39	(0.378,0.408]	chr11	469554	4	SS3_PROX	SS3_PROX:INTRON	C11orf24	ENSG00000171067.11	ENST00000304271.11:ENST00000533310.5:ENST00000530166.5:ENST00000527280.1:ENST00000529590.5:ENST00000532534.5:ENST00000532969.1:ENST00000529339.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	49	2	2.30961	2.506295	2.70298	0.055088	0.00325723	0.165463	0.0524329
chr16	22284094	22284193	6321475	0	+	0.323232	(0.32,0.35]	chr16	605178	2	UTR3	UTR3:EXON_MRNA	EEF2K	ENSG00000103319.12	ENST00000263026.10	protein_coding	protein_coding	protein_coding	protein_coding	4	63	2	2.02133	2.50629	2.99125	0.017146	0.00958447	0.111072	0.0820838
chr10	7802954	7803054	4387673	0	+	0.35	(0.32,0.35]	chr10	405068	1	SS5_PROX	SS5_PROX:INTRON	ATP5F1C	ENSG00000165629.20	ENST00000493053.5:ENST00000335698.4:ENST00000356708.12:ENST00000465936.5:ENST00000473809.5:ENST00000480528.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	39	2	2.23182	2.506275	2.78073	0.068598	0.01481	0.184298	0.106702
chr14	45204108	45204208	5884784	0	-	0.33	(0.32,0.35]	chr14	558335	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	MIS18BP1	ENSG00000129534.14	ENST00000310806.9:ENST00000470424.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	39	2	2.23182	2.506275	2.78073	0.068598	0.01481	0.184298	0.106702
chr2	3333722	3333822	1059290	0	-	0.35	(0.32,0.35]	chr2	112902	133	INTRON	INTRON	EIPR1	ENSG00000032389.13	ENST00000398659.8:ENST00000382125.9:ENST00000455162.5:ENST00000441271.1:ENST00000463662.5:ENST00000435721.5:ENST00000443925.6:ENST00000406835.6:ENST00000444776.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	39	2	2.23182	2.506275	2.78073	0.068598	0.01481	0.184298	0.106702
chr6	111473927	111474026	3192271	0	-	0.373737	(0.35,0.378]	chr6	297359	14	INTRON	INTRON	REV3L	ENSG00000009413.16	ENST00000422377.5:ENST00000434009.5:ENST00000368802.8:ENST00000435970.5:ENST00000358835.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	49	2	2.23043	2.506275	2.78212	0.0187487	0.0168532	0.117523	0.103549
chrX	121219626	121219726	7715386	0	+	0.33	(0.32,0.35]	chrX	789390	334	INTRON	INTRON	ENSG00000286163	ENSG00000286163.1	ENST00000651788.1	lncRNA	lncRNA	lncRNA	lncRNA	2	39	2	2.23182	2.506275	2.78073	0.068598	0.01481	0.184298	0.106702
chr11	3784638	3784738	4895046	0	-	0.51	(0.476,0.515]	chr11	458931	21	INTRON	INTRON	NUP98	ENSG00000110713.17	ENST00000359171.8:ENST00000324932.12:ENST00000650171.1:ENST00000355260.7:ENST00000397004.8:ENST00000397007.8:ENST00000532475.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	54	2	2.06898	2.50624	2.9435	0.0137491	0.00929849	0.10247	0.0817766
chr16	89644630	89644729	6543643	0	-	0.575758	(0.57,1]	chr16	634293	5	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	CHMP1A	ENSG00000131165.16	ENST00000676275.1:ENST00000675909.1:ENST00000397901.8:ENST00000676355.1:ENST00000675161.1:ENST00000676402.1:ENST00000675016.1:ENST00000551981.6:ENST00000675309.1:ENST00000547687.2:ENST00000675760.1:ENST00000675952.1:ENST00000676342.1:ENST00000535997.7:ENST00000674799.1:ENST00000675536.1:ENST00000549328.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	48	2	1.52818	2.506235	3.48429	0.0508101	3.68893e-5	0.175989	0.00515993
chr14	23324488	23324583	5656989	0	+	0.505263	(0.476,0.515]	chr14	539473	3	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	BCL2L2-PABPN1:PABPN1	ENSG00000258643.6:ENSG00000100836.11	ENST00000678502.1:ENST00000553781.5:ENST00000557008.2:ENST00000216727.9:ENST00000397276.6:ENST00000556821.5:ENST00000553960.1:ENST00000555295.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	28	379	2	2.49817	2.506205	2.51424	7.25771e-5	1.6157e-5	0.00767614	0.00303754
chr5	146480849	146480949	2515853	0	+	0.26	[0,0.28]	chr5	240356	3	SS3_PROX	SS3_PROX:INTRON	TCERG1	ENSG00000113649.13	ENST00000296702.9:ENST00000679501.2:ENST00000394421.7:ENST00000549332.1:ENST00000515203.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	181	2	2.03527	2.50612	2.97697	0.00499569	8.33759e-4	0.0646039	0.0266389
chr1	173950123	173950221	587305	0	-	0.408163	(0.378,0.408]	chr1	70681	22	INTRON	INTRON	RC3H1	ENSG00000135870.12	ENST00000367696.7:ENST00000258349.8:ENST00000367694.2	protein_coding	protein_coding	protein_coding	protein_coding	2	35	2	2.46373	2.50611	2.54849	0.0382831	0.0273196	0.141795	0.136494
chr2	86721607	86721707	823490	0	+	0.38	(0.378,0.408]	chr2	92028	4	INTRON	INTRON	RMND5A	ENSG00000153561.13	ENST00000283632.5	protein_coding	protein_coding	protein_coding	protein_coding	2	35	2	2.46373	2.50611	2.54849	0.0382831	0.0273196	0.141795	0.136494
chr6	37295350	37295450	2855693	0	+	0.39	(0.378,0.408]	chr6	269985	36	INTRON	INTRON	TBC1D22B	ENSG00000065491.8	ENST00000373491.3	protein_coding	protein_coding	protein_coding	protein_coding	2	35	2	2.46373	2.50611	2.54849	0.0382831	0.0273196	0.141795	0.136494
chr9	124365508	124365608	4346151	0	-	0.39	(0.378,0.408]	chr9	399153	82	INTRON	INTRON	PSMB7	ENSG00000136930.13	ENST00000259457.8:ENST00000498485.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	35	2	2.46373	2.50611	2.54849	0.0382831	0.0273196	0.141795	0.136494
chr2	61338252	61338352	1129206	0	-	0.49	(0.476,0.515]	chr2	121404	39	INTRON	INTRON	USP34	ENSG00000115464.15	ENST00000398571.7	protein_coding	protein_coding	protein_coding	protein_coding	4	54	2	1.86014	2.50608	3.15202	0.0277606	0.00455841	0.137011	0.0595107
chr17	78207405	78207504	6682162	0	+	0.50505	(0.476,0.515]	chr17	652736	5	UTR3	UTR3:EXON_MRNA	AFMID	ENSG00000183077.16	ENST00000409257.10:ENST00000327898.9	protein_coding	protein_coding	protein_coding	protein_coding	7	75	2	1.40573	2.506	3.60627	0.0410362	7.49088e-4	0.161534	0.0251179
chr17	82560574	82560673	6693015	0	+	0.343434	(0.32,0.35]	chr17	654633	7	INTRON	INTRON	FOXK2	ENSG00000141568.21	ENST00000473637.6:ENST00000335255.10:ENST00000527313.6:ENST00000570585.1:ENST00000531030.5:ENST00000526383.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	39	2	2.4458	2.50599	2.56618	0.0425977	0.0274185	0.148082	0.136498
chr2	127744848	127744948	1225211	0	-	0.35	(0.32,0.35]	chr2	130486	64	INTRON	INTRON	WDR33	ENSG00000136709.12	ENST00000322313.9:ENST00000436787.5:ENST00000393006.5	protein_coding	protein_coding	protein_coding	protein_coding	2	39	2	2.4458	2.50599	2.56618	0.0425977	0.0274185	0.148082	0.136498
chr3	177171716	177171816	1872191	0	-	0.35	(0.32,0.35]	chr3	187438	4	INTRON	INTRON	TBL1XR1	ENSG00000177565.18	ENST00000457928.7:ENST00000430069.5:ENST00000673974.1:ENST00000352800.10:ENST00000422442.6:ENST00000428970.5:ENST00000424913.5:ENST00000437738.5:ENST00000431421.5:ENST00000635794.1:ENST00000630796.2:ENST00000450267.5:ENST00000630833.2:ENST00000431674.5:ENST00000422066.5:ENST00000443315.5:ENST00000627825.2:ENST00000427349.5:ENST00000413084.5:ENST00000637137.1:ENST00000491623.2:ENST00000637544.1:ENST00000636187.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	39	2	2.4458	2.50599	2.56618	0.0425977	0.0274185	0.148082	0.136498
chr7	23430968	23431068	3503271	0	-	0.33	(0.32,0.35]	chr7	326907	4	SS5_PROX	SS5_PROX:INTRON	IGF2BP3	ENSG00000136231.14	ENST00000258729.8:ENST00000421467.6:ENST00000468263.5:ENST00000479504.5:ENST00000466809.6:ENST00000491719.5:ENST00000465058.5:ENST00000469723.5:ENST00000476938.5:ENST00000468005.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	39	2	2.4458	2.50599	2.56618	0.0425977	0.0274185	0.148082	0.136498
chr8	11806176	11806274	3702556	0	+	0.479592	(0.476,0.515]	chr8	343487	23	INTRON	INTRON	FDFT1	ENSG00000079459.13	ENST00000538689.4:ENST00000615631.4:ENST00000618539.4:ENST00000530337.5:ENST00000623368.3:ENST00000446331.6:ENST00000443614.6:ENST00000220584.9:ENST00000525607.5:ENST00000525283.5:ENST00000529464.5:ENST00000525900.5:ENST00000528812.5:ENST00000622850.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	19	222	2	2.07634	2.5059899999999997	2.93564	3.47849e-4	1.45166e-4	0.0166215	0.0110154
chr15	82420475	82420575	6076200	0	+	0.29	(0.28,0.32]	chr15	578790	4	SS5_PROX	SS5_PROX:INTRON	ENSG00000278202	ENSG00000278202.1	ENST00000613086.1	lncRNA	lncRNA	lncRNA	lncRNA	4	71	2	2.38504	2.5059500000000003	2.62686	0.0289217	0.00475871	0.1274	0.0636201
chr6	109141175	109141273	2935855	0	+	0.387755	(0.378,0.408]	chr6	276380	1	INTRON	INTRON	CEP57L1	ENSG00000183137.15	ENST00000521277.5:ENST00000407272.5:ENST00000519286.5:ENST00000518329.5:ENST00000522461.5:ENST00000518853.5:ENST00000521522.5:ENST00000524064.5:ENST00000522608.5:ENST00000517392.6:ENST00000519407.5:ENST00000521503.5:ENST00000519095.5:ENST00000520610.5:ENST00000368968.6:ENST00000522490.5:ENST00000523209.5:ENST00000368970.6:ENST00000520883.5:ENST00000520761.1:ENST00000523787.5:ENST00000359793.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	92	2	2.13797	2.50593	2.87389	0.0124882	4.01435e-4	0.0923444	0.0179994
chr18	9945458	9945558	6873665	0	+	0.5	(0.476,0.515]	chr18	680897	4	SS5_PROX	SS5_PROX:INTRON	VAPA	ENSG00000101558.14	ENST00000400000.7:ENST00000340541.4:ENST00000584796.5:ENST00000583879.5:ENST00000583475.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	101	2	2.21313	2.505845	2.79856	0.00401502	7.60949e-4	0.0578059	0.0252625
chr21	37374993	37375093	7406303	0	+	0.45	(0.44,0.476]	chr21	754846	65	INTRON	INTRON	DYRK1A	ENSG00000157540.22	ENST00000646523.1:ENST00000647425.1:ENST00000647188.2:ENST00000647504.1:ENST00000644942.1:ENST00000338785.8:ENST00000643624.1:ENST00000643551.1:ENST00000426672.6	protein_coding	protein_coding	protein_coding	protein_coding	9	109	2	1.71377	2.50581	3.29785	0.0102504	2.77287e-4	0.089002	0.0152764
chr7	151514304	151514404	3674870	0	-	0.36	(0.35,0.378]	chr7	341207	158	INTRON	INTRON	RHEB	ENSG00000106615.10	ENST00000262187.10:ENST00000472642.5:ENST00000478470.5:ENST00000496004.5:ENST00000470370.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	91	2	2.24809	2.50581	2.76353	0.00361961	0.00343059	0.0554656	0.0517761
chr1	20755867	20755966	389544	0	-	0.353535	(0.35,0.378]	chr1	46531	56	INTRON	INTRON	HP1BP3	ENSG00000127483.19	ENST00000438032.6:ENST00000312239.10:ENST00000375003.6:ENST00000419948.5	protein_coding	protein_coding	protein_coding	protein_coding	4	59	2	2.07049	2.5058	2.94111	0.0140397	0.0104563	0.102801	0.0855102
chr7	158820449	158820549	3689723	0	-	0.36	(0.35,0.378]	chr7	342421	210	INTRON	INTRON	ESYT2	ENSG00000117868.18	ENST00000251527.10:ENST00000275418.13:ENST00000652148.1:ENST00000483958.5:ENST00000497111.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	59	2	2.07049	2.5058	2.94111	0.0140397	0.0104563	0.102801	0.0855102
chr22	19451036	19451134	7554605	0	-	0.489796	(0.476,0.515]	chr22	772345	4	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	UFD1	ENSG00000070010.19	ENST00000263202.15:ENST00000399523.5:ENST00000459854.5:ENST00000466373.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	70	917	2	2.38309	2.50577	2.62845	6.42721e-6	6.35881e-6	0.00192111	0.00177825
chr20	63195919	63196018	7362576	0	-	0.383838	(0.378,0.408]	chr20	751220	6	UTR3	UTR3:EXON_MRNA	YTHDF1	ENSG00000149658.18	ENST00000370339.8	protein_coding	protein_coding	protein_coding	protein_coding	9	90	2	1.2437	2.50572	3.76774	0.049286	4.21442e-4	0.174117	0.0189827
chr20	49711075	49711175	7353600	0	-	0.31	(0.28,0.32]	chr20	749846	540	INTRON	INTRON	B4GALT5	ENSG00000158470.5	ENST00000371711.4	protein_coding	protein_coding	protein_coding	protein_coding	5	94	2	2.23223	2.5057	2.77917	0.0109124	0.00285651	0.0873034	0.0494641
chr22	21425636	21425735	7481255	0	+	0.464646	(0.44,0.476]	chr22	763209	45	INTRON	INTRON	HIC2	ENSG00000169635.10	ENST00000407464.7:ENST00000407598.2	protein_coding	protein_coding	protein_coding	protein_coding	12	161	2	2.03685	2.5056950000000002	2.97454	0.00232626	7.44944e-5	0.0431842	0.00720956
chr2	235641410	235641509	1042811	0	+	0.454545	(0.44,0.476]	chr2	111222	1165	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1:ENST00000402604.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	73	2	2.03034	2.50567	2.981	0.0173569	9.31193e-4	0.104189	0.0278746
chr17	16217393	16217461	6561004	0	+	0.573529	(0.57,1]	chr17	637722	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PIGL	ENSG00000108474.17	ENST00000607144.4:ENST00000581006.5:ENST00000225609.10:ENST00000395844.8:ENST00000498772.6:ENST00000584797.5:ENST00000470116.2:ENST00000585034.5:ENST00000477745.5:ENST00000489009.1:ENST00000463810.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	37	2	1.58776	2.5054950000000002	3.42323	0.0295652	8.58388e-4	0.142135	0.0267428
chr10	125121956	125122056	4713952	0	-	0.57	(0.515,0.57]	chr10	434913	105	INTRON	INTRON	CTBP2	ENSG00000175029.17	ENST00000337195.9:ENST00000411419.6:ENST00000494626.6:ENST00000531469.5:ENST00000460976.5:ENST00000476817.1:ENST00000530884.1:ENST00000530930.1:ENST00000467395.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	52	2	2.32967	2.505495	2.68132	0.0133671	0.00324198	0.0946278	0.0524329
chrX	66016360	66016460	7672616	0	+	0.45	(0.44,0.476]	chrX	785237	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	MIR223HG	ENSG00000274536.8	ENST00000618234.5:ENST00000621933.2:ENST00000691658.1:ENST00000658749.1	lncRNA	lncRNA	lncRNA	lncRNA	14	163	2	1.85922	2.50547	3.15172	0.0022007	1.3147e-4	0.0435144	0.010437
chr3	41200581	41200681	1403035	0	+	0.4	(0.378,0.408]	chr3	147416	2	SS5_PROX	SS5_PROX:INTRON	CTNNB1	ENSG00000168036.18	ENST00000643541.1:ENST00000426215.5:ENST00000645210.1:ENST00000646381.1:ENST00000405570.6:ENST00000642248.1:ENST00000433400.6:ENST00000642992.1:ENST00000431914.6:ENST00000642836.1:ENST00000396185.8:ENST00000642986.1:ENST00000644678.1:ENST00000643031.1:ENST00000396183.7:ENST00000645982.1:ENST00000453024.6:ENST00000645900.1:ENST00000647264.1:ENST00000646174.1:ENST00000643992.1:ENST00000642886.1:ENST00000647390.1:ENST00000643052.1:ENST00000488914.2:ENST00000349496.11:ENST00000642426.1:ENST00000646074.1:ENST00000645276.1:ENST00000644138.1:ENST00000646116.1:ENST00000644873.1:ENST00000643865.1:ENST00000644867.1:ENST00000646725.1:ENST00000645493.1:ENST00000646369.1:ENST00000643977.1:ENST00000647413.1:ENST00000644524.1:ENST00000645305.1:ENST00000643297.1:ENST00000450969.6:ENST00000642315.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	157	2	2.13567	2.50543	2.87519	0.00145781	2.39791e-4	0.0349875	0.0142214
chr12	76066570	76066670	5370037	0	-	0.3	(0.28,0.32]	chr12	512308	51	INTRON	INTRON	NAP1L1	ENSG00000187109.15	ENST00000618691.5:ENST00000552056.5:ENST00000393263.7:ENST00000431879.7:ENST00000552147.5:ENST00000547773.5:ENST00000544816.5:ENST00000542344.5:ENST00000535020.6:ENST00000549596.5:ENST00000552342.5:ENST00000547529.6:ENST00000548044.5:ENST00000550934.5:ENST00000551992.5:ENST00000548273.5:ENST00000551600.5:ENST00000547704.5:ENST00000551524.5:ENST00000549988.5:ENST00000547479.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	57	2	2.38391	2.5053850000000004	2.62686	0.0289217	0.0122525	0.1274	0.0969406
chr1	162577866	162577963	238483	0	+	0.43299	(0.408,0.44]	chr1	28710	5	INTRON	INTRON	UAP1	ENSG00000117143.14	ENST00000367925.6:ENST00000367926.9	protein_coding	protein_coding	protein_coding	protein_coding	5	75	2	2.36228	2.5052849999999998	2.64829	0.00528443	0.00400062	0.0635846	0.057767
chr9	137624252	137624352	4223524	0	+	0.44	(0.408,0.44]	chr9	388152	38	INTRON	INTRON	EHMT1	ENSG00000181090.21	ENST00000462484.5:ENST00000371394.6:ENST00000630754.2:ENST00000460843.6:ENST00000626216.2:ENST00000637593.1:ENST00000629335.2:ENST00000637335.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	56	2	1.92319	2.5052849999999998	3.08738	0.0247322	0.00478231	0.12011	0.0636201
chr7	139370686	139370786	3437696	0	+	0.53	(0.515,0.57]	chr7	320318	100	INTRON	INTRON	LUC7L2:FMC1-LUC7L2	ENSG00000146963.18:ENSG00000269955.2	ENST00000541170.7:ENST00000541515.3:ENST00000608368.5:ENST00000619796.4:ENST00000354926.9:ENST00000435096.1:ENST00000456182.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	113	2	2.30697	2.5052450000000004	2.70352	9.70997e-4	4.71195e-4	0.0283239	0.0196294
chr7	12401262	12401362	3485415	0	-	0.35	(0.32,0.35]	chr7	325970	71	INTRON	INTRON	VWDE	ENSG00000146530.15	ENST00000275358.8:ENST00000452576.6:ENST00000521169.5:ENST00000326715.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	86	2	2.22655	2.50523	2.78391	0.00823133	0.00347285	0.0812969	0.052042
chr10	47529185	47529285	4609235	0	-	0.22	[0,0.28]	chr10	424641	53	INTRON	INTRON	ENSG00000254929	ENSG00000254929.6	ENST00000605970.5:ENST00000431840.2	lncRNA	lncRNA	lncRNA	lncRNA	3	67	2	2.20642	2.50519	2.80396	0.0280845	0.0161429	0.125065	0.109464
chr12	66152323	66152376	5352687	0	-	0.45283	(0.44,0.476]	chr12	511458	2	CDS	CDS:UTR3:UTR5:EXON_MRNA:INTRON	TMBIM4	ENSG00000155957.19	ENST00000358230.8:ENST00000544599.5:ENST00000398033.8:ENST00000633367.1:ENST00000286424.12:ENST00000545407.5:ENST00000542724.5:ENST00000545504.1:ENST00000534930.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	48	2	2.42996	2.5051449999999997	2.58033	0.0247511	0.0104804	0.131869	0.0855777
chr1	153877126	153877226	557307	0	-	0.43	(0.408,0.44]	chr1	65983	484	INTRON	INTRON	GATAD2B	ENSG00000143614.10	ENST00000368655.5:ENST00000634544.1:ENST00000634408.1:ENST00000634401.1:ENST00000634791.1:ENST00000636014.1:ENST00000637331.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	61	2	2.31565	2.50511	2.69457	0.0154718	0.00331036	0.100909	0.0527031
chr7	64923480	64923575	3321293	0	+	0.505263	(0.476,0.515]	chr7	308799	2	EXON_LNCRNA	EXON_LNCRNA:INTRON	ZNF273	ENSG00000198039.12	ENST00000527278.5:ENST00000489672.5:ENST00000476120.2:ENST00000395375.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	100	2	2.4132	2.5049599999999996	2.59672	0.00417094	6.3664e-4	0.0570595	0.0228285
chr2	31997089	31997189	1090982	0	-	0.33	(0.32,0.35]	chr2	116913	339	INTRON	INTRON	MEMO1:DPY30	ENSG00000162959.14:ENSG00000162961.14	ENST00000295065.9:ENST00000446765.5:ENST00000404530.6:ENST00000490459.5:ENST00000426310.6:ENST00000413686.1:ENST00000407893.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	53	2	2.49929	2.50495	2.51061	0.0364463	0.00776612	0.138959	0.0787356
chr7	105300170	105300269	3603017	0	-	0.494949	(0.476,0.515]	chr7	336154	15	INTRON	INTRON	SRPK2	ENSG00000135250.17	ENST00000393651.8:ENST00000482897.5:ENST00000460391.5:ENST00000462282.5:ENST00000465112.5:ENST00000482862.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	112	2	2.22708	2.504945	2.78281	0.00263694	6.29551e-4	0.0458452	0.0226349
chr10	68023052	68023152	4637414	0	-	0.35	(0.32,0.35]	chr10	426398	85	INTRON	INTRON	HERC4	ENSG00000148634.16	ENST00000277817.10:ENST00000373700.9:ENST00000412272.6:ENST00000395198.7:ENST00000473533.6:ENST00000427635.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	53	2	2.04237	2.504915	2.96746	0.0375542	0.00815799	0.140222	0.0810802
chr5	10387664	10387762	2317991	0	+	0.428571	(0.408,0.44]	chr5	224637	2	INTRON	INTRON	MARCHF6	ENSG00000145495.16	ENST00000274140.10:ENST00000449913.6:ENST00000502795.5:ENST00000511802.5:ENST00000503788.5:ENST00000640713.1:ENST00000510872.5:ENST00000507863.1:ENST00000506131.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	27	330	2	2.06065	2.504855	2.94906	2.14499e-4	2.2704e-5	0.0128548	0.00389234
chr14	96868194	96868294	5811588	0	+	0.38	(0.378,0.408]	chr14	551089	34	EXON_MRNA	EXON_MRNA:INTRON	VRK1	ENSG00000100749.9	ENST00000553683.2:ENST00000680538.1:ENST00000681195.1:ENST00000681524.1:ENST00000680084.1:ENST00000679533.1:ENST00000681598.1:ENST00000679727.1:ENST00000679758.1:ENST00000679977.1:ENST00000680387.1:ENST00000680335.1:ENST00000680683.1:ENST00000681474.1:ENST00000216639.8:ENST00000681363.1:ENST00000681538.1:ENST00000680922.1:ENST00000679903.1:ENST00000681101.1:ENST00000681419.1:ENST00000679941.1:ENST00000680849.1:ENST00000679770.1:ENST00000681493.1:ENST00000681778.1:ENST00000680993.1:ENST00000681355.1:ENST00000681695.1:ENST00000681344.1:ENST00000680007.1:ENST00000679918.1:ENST00000679816.1:ENST00000680756.1:ENST00000681249.1:ENST00000680526.1:ENST00000679365.1:ENST00000680851.1:ENST00000679506.1:ENST00000679650.1:ENST00000679462.1:ENST00000680724.1:ENST00000681061.1:ENST00000681677.1:ENST00000679843.1:ENST00000555067.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	66	2	1.67942	2.5048399999999997	3.33026	0.0336706	0.00189824	0.134145	0.0402736
chr15	59095093	59095190	6039977	0	+	0.309278	(0.28,0.32]	chr15	575063	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	RNF111	ENSG00000157450.16	ENST00000348370.9:ENST00000559209.5:ENST00000557998.5:ENST00000561186.5:ENST00000560952.1:ENST00000560080.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	58	2	1.96475	2.5048	3.04485	0.0428385	0.00894006	0.162255	0.0799922
chr18	9945654	9945751	6873667	0	+	0.309278	(0.28,0.32]	chr18	680898	2	INTRON	INTRON	VAPA	ENSG00000101558.14	ENST00000400000.7:ENST00000340541.4:ENST00000584796.5:ENST00000583879.5:ENST00000583475.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	107	2	1.78733	2.504775	3.22222	0.0276087	4.01934e-4	0.123904	0.0180102
chr10	48428816	48428914	4432224	0	+	0.44898	(0.44,0.476]	chr10	408626	13	INTRON	INTRON	MAPK8	ENSG00000107643.17	ENST00000395611.7:ENST00000374189.6:ENST00000374179.8:ENST00000360332.7:ENST00000374182.7:ENST00000374176.8:ENST00000469879.6:ENST00000469110.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	46	2	1.93084	2.50473	3.07862	0.0443175	0.0060153	0.162302	0.0674604
chr4	143168	143267	1905832	0	+	0.464646	(0.44,0.476]	chr4	191032	113	INTRON	INTRON	ZNF718	ENSG00000250312.8	ENST00000642529.1:ENST00000510175.6:ENST00000609714.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	46	2	1.93084	2.50473	3.07862	0.0443175	0.0060153	0.162302	0.0674604
chr7	157215275	157215374	3454719	0	+	0.353535	(0.35,0.378]	chr7	322975	70	INTRON	INTRON	UBE3C	ENSG00000009335.18	ENST00000348165.10:ENST00000469336.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	80	2	1.95579	2.50473	3.05367	0.0234538	7.17897e-4	0.11867	0.0244389
chr7	121213920	121214020	3395908	0	+	0.37	(0.35,0.378]	chr7	317781	639	INTRON	INTRON	CPED1	ENSG00000106034.18	ENST00000310396.10:ENST00000450913.6:ENST00000423795.5:ENST00000466055.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	80	2	2.1686	2.504585	2.84057	0.0116706	0.00189462	0.0891208	0.0402736
chr1	25817162	25817258	49110	0	+	0.489583	(0.476,0.515]	chr1	6099	16	UTR3	UTR3:EXON_MRNA	SELENON	ENSG00000162430.18	ENST00000361547.7:ENST00000374315.1	protein_coding	protein_coding	protein_coding	protein_coding	6	92	2	2.16306	2.50457	2.84608	0.00973468	6.05245e-4	0.0877284	0.0226059
chr17	21627075	21627174	6578424	0	+	0.515152	(0.476,0.515]	chr17	639543	122	INTRON	INTRON	ENSG00000260157	ENSG00000260157.3	ENST00000618784.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	4	58	2	2.48527	2.5045349999999997	2.5238	0.03496	0.00218334	0.13747500000000001	0.0435144
chr19	36229714	36229813	7057572	0	+	0.464646	(0.44,0.476]	chr19	704670	5	INTRON	INTRON	ZNF146	ENSG00000167635.12	ENST00000456324.5:ENST00000591063.5:ENST00000443387.3:ENST00000586094.5:ENST00000587285.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	103	2	2.12136	2.5045200000000003	2.88768	0.00591413	5.10179e-4	0.0694038	0.020816
chr17	80360793	80360881	6684103	0	+	0.409091	(0.408,0.44]	chr17	653156	2	INTRON	INTRON	RNF213	ENSG00000173821.20	ENST00000582970.6:ENST00000508628.6:ENST00000558116.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	47	2	2.36073	2.50451	2.64829	0.0481658	0.00400062	0.153019	0.057767
chr8	39087156	39087256	3739213	0	+	0.44	(0.408,0.44]	chr8	347580	37	INTRON	INTRON	ADAM9	ENSG00000168615.13	ENST00000678474.1:ENST00000676765.1:ENST00000676936.1:ENST00000677908.1:ENST00000677004.1:ENST00000677165.1:ENST00000481058.2:ENST00000676643.1:ENST00000676669.1:ENST00000679268.1:ENST00000677582.1:ENST00000676617.1:ENST00000677137.1:ENST00000678540.1:ENST00000677359.1:ENST00000678730.1:ENST00000487273.7:ENST00000678253.1:ENST00000676489.1:ENST00000379917.7:ENST00000468065.5:ENST00000481873.7:ENST00000676919.1:ENST00000678863.1:ENST00000484143.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	47	2	2.36073	2.50451	2.64829	0.0481658	0.00400062	0.153019	0.057767
chr2	112656521	112656621	852172	0	+	0.26	[0,0.28]	chr2	95585	32	INTRON	INTRON	SLC20A1	ENSG00000144136.11	ENST00000272542.8:ENST00000498224.5:ENST00000433924.5:ENST00000456264.5:ENST00000413135.1:ENST00000480984.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	100	2	1.53476	2.504495	3.47423	0.0398264	0.00268371	0.161534	0.0464781
chr2	169834049	169834149	908209	0	+	0.51	(0.476,0.515]	chr2	100222	56	INTRON	INTRON	UBR3	ENSG00000144357.18	ENST00000272793.11	protein_coding	protein_coding	protein_coding	protein_coding	3	45	2	2.37731	2.504495	2.63168	0.0237106	0.0111793	0.118716	0.0937192
chr3	48964320	48964418	1421915	0	+	0.489796	(0.476,0.515]	chr3	149504	23	INTRON	INTRON	ARIH2	ENSG00000177479.20	ENST00000478224.5:ENST00000430423.5:ENST00000498314.5:ENST00000474618.5:ENST00000449376.5:ENST00000490095.5:ENST00000356401.9:ENST00000495761.5:ENST00000483333.5:ENST00000482427.5:ENST00000488963.5:ENST00000486316.5:ENST00000474936.6:ENST00000484999.5:ENST00000452385.5:ENST00000472640.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	45	2	2.37731	2.504495	2.63168	0.0237106	0.0111793	0.118716	0.0937192
chr9	98789406	98789504	4302178	0	-	0.255102	[0,0.28]	chr9	395648	42	INTRON	INTRON	ANKS6	ENSG00000165138.18	ENST00000375019.6:ENST00000353234.5:ENST00000634393.1:ENST00000466120.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	100	2	1.53476	2.504495	3.47423	0.0398264	0.00268371	0.161534	0.0464781
chr2	200980672	200980772	1310967	0	-	0.47	(0.44,0.476]	chr2	137226	71	UTR3	UTR3:EXON_MRNA	FAM126B	ENSG00000155744.10	ENST00000681958.1:ENST00000418596.7:ENST00000286181.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	54	2	1.98146	2.504485	3.02751	0.0186013	0.00715968	0.117264	0.0723634
chr21	32740699	32740798	7440145	0	-	0.323232	(0.32,0.35]	chr21	759205	20	INTRON	INTRON	PAXBP1	ENSG00000159086.15	ENST00000331923.9:ENST00000466846.5:ENST00000443785.5:ENST00000497873.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	53	2	2.01768	2.5044649999999997	2.99125	0.0361337	0.00958447	0.152563	0.0820838
chr11	83159171	83159268	4840814	0	+	0.298969	(0.28,0.32]	chr11	451494	4	INTRON	INTRON	PCF11	ENSG00000165494.12	ENST00000298281.8:ENST00000530660.5:ENST00000690938.1:ENST00000530304.5:ENST00000533018.1	protein_coding	protein_coding	protein_coding	protein_coding	7	131	2	2.33737	2.5044500000000003	2.67153	0.00436402	0.00256382	0.060356	0.0450785
chr14	73092743	73092842	5784430	0	+	0.555556	(0.515,0.57]	chr14	547856	39	INTRON	INTRON	RBM25	ENSG00000119707.14	ENST00000527432.5:ENST00000531500.5:ENST00000261973.12:ENST00000532683.5:ENST00000525321.5:ENST00000526754.5:ENST00000528081.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	40	2	2.43589	2.504435	2.57298	0.0370871	0.00506495	0.139194	0.0646039
chr2	101297174	101297273	1199434	0	-	0.393939	(0.378,0.408]	chr2	128179	16	INTRON	INTRON	RNF149	ENSG00000163162.9	ENST00000424632.5:ENST00000295317.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	80	2	1.85968	2.5042999999999997	3.14892	0.0075228099999999996	0.00499984	0.0773151	0.0617433
chr15	85051703	85051802	6089629	0	+	0.434343	(0.408,0.44]	chr15	579504	690	INTRON	INTRON	PDE8A	ENSG00000073417.15	ENST00000310298.8:ENST00000557957.5:ENST00000394553.6:ENST00000339708.9:ENST00000478717.5:ENST00000485596.5:ENST00000559742.5:ENST00000559086.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	34	2	2.18807	2.504245	2.82042	0.0708044	0.0120121	0.184528	0.0962115
chr16	70004058	70004158	6509081	0	-	0.45	(0.44,0.476]	chr16	630286	72	INTRON	INTRON	PDXDC2P-NPIPB14P	ENSG00000196696.13	ENST00000531894.5:ENST00000530079.5:ENST00000525331.6:ENST00000526478.5:ENST00000529089.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	3	45	2	2.33272	2.50422	2.67572	0.0212064	0.0129984	0.113017	0.0991656
chr7	155709375	155709475	3452553	0	+	0.46	(0.44,0.476]	chr7	322690	16	INTRON	INTRON	RBM33	ENSG00000184863.11	ENST00000401878.8:ENST00000307403.6:ENST00000440108.5:ENST00000392761.3:ENST00000486747.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	45	2	2.33272	2.50422	2.67572	0.0212064	0.0129984	0.113017	0.0991656
chr1	44751357	44751455	92428	0	+	0.540816	(0.515,0.57]	chr1	12274	4	INTRON	INTRON	KIF2C	ENSG00000142945.13	ENST00000452259.5:ENST00000493027.5:ENST00000372224.9:ENST00000455186.5:ENST00000372217.5:ENST00000480574.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	99	2	1.69818	2.50419	3.3102	0.00800724	1.88344e-4	0.0801591	0.012549
chr10	73081994	73082094	4647697	0	-	0.37	(0.35,0.378]	chr10	427555	67	INTRON	INTRON	P4HA1	ENSG00000122884.13	ENST00000394890.7:ENST00000307116.6:ENST00000373008.6:ENST00000440381.5:ENST00000263556.3	protein_coding	protein_coding	protein_coding	protein_coding	3	49	2	2.34278	2.504125	2.66547	0.0233639	0.0129593	0.118323	0.0991015
chr4	169629334	169629434	2079963	0	+	0.37	(0.35,0.378]	chr4	205601	79	INTRON	INTRON	CLCN3	ENSG00000109572.15	ENST00000511092.5:ENST00000347613.8:ENST00000360642.7:ENST00000512813.5:ENST00000513761.6	protein_coding	protein_coding	protein_coding	protein_coding	3	49	2	2.34278	2.504125	2.66547	0.0233639	0.0129593	0.118323	0.0991015
chr8	140748830	140748928	4077517	0	-	0.367347	(0.35,0.378]	chr8	370415	16	INTRON	INTRON	PTK2	ENSG00000169398.20	ENST00000696786.1:ENST00000522684.5:ENST00000395218.3:ENST00000519654.5:ENST00000521059.5:ENST00000517887.5:ENST00000519465.5:ENST00000519993.5:ENST00000340930.7:ENST00000523539.5:ENST00000519419.5:ENST00000524202.5:ENST00000521986.5:ENST00000521250.5:ENST00000521981.5:ENST00000521029.5:ENST00000520151.5:ENST00000523670.5:ENST00000519024.5:ENST00000523746.5:ENST00000523474.5:ENST00000519899.5:ENST00000519361.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	49	2	2.34278	2.504125	2.66547	0.0233639	0.0129593	0.118323	0.0991015
chr17	66400114	66400214	6663273	0	+	0.45	(0.44,0.476]	chr17	650326	359	INTRON	INTRON	PRKCA	ENSG00000154229.12	ENST00000413366.8:ENST00000578063.5:ENST00000284384.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	45	2	2.14573	2.5040199999999997	2.86231	0.0238593	0.012214	0.129075	0.0910127
chrX	73956799	73956899	7682223	0	+	0.47	(0.44,0.476]	chrX	786624	74	INTRON	INTRON	JPX	ENSG00000225470.8	ENST00000664637.1:ENST00000639185.1:ENST00000655090.1:ENST00000640437.1:ENST00000660546.1:ENST00000667886.1:ENST00000660840.1:ENST00000657179.1:ENST00000670506.1:ENST00000657910.1:ENST00000662120.1:ENST00000671207.1:ENST00000659254.1:ENST00000656624.1:ENST00000667573.1:ENST00000660856.1:ENST00000660836.1:ENST00000668590.1:ENST00000658649.1:ENST00000414209.6:ENST00000654137.1:ENST00000670994.1:ENST00000653479.1:ENST00000602772.5:ENST00000655879.1:ENST00000657372.1:ENST00000657096.1:ENST00000602985.6:ENST00000670685.1:ENST00000670503.1:ENST00000663027.1:ENST00000654995.1:ENST00000602895.6:ENST00000654374.1:ENST00000660087.1:ENST00000665032.1:ENST00000671336.1:ENST00000671476.1:ENST00000667057.1:ENST00000670192.1:ENST00000670464.1:ENST00000665345.1:ENST00000661546.1:ENST00000662543.1:ENST00000602938.6:ENST00000664295.1:ENST00000654005.1:ENST00000669149.1:ENST00000659852.1:ENST00000656509.1:ENST00000602294.6:ENST00000667294.1:ENST00000663470.1:ENST00000602920.6:ENST00000671021.1:ENST00000659849.1:ENST00000667937.1:ENST00000661130.1:ENST00000654196.1:ENST00000655994.1:ENST00000659373.1:ENST00000662239.1:ENST00000670805.1:ENST00000656263.1:ENST00000653069.1:ENST00000657638.1:ENST00000653808.1:ENST00000653929.1:ENST00000653885.1:ENST00000659023.1:ENST00000602546.5:ENST00000664328.1:ENST00000659622.1:ENST00000671518.1:ENST00000670408.1	lncRNA	lncRNA	lncRNA	lncRNA	3	45	2	2.14573	2.5040199999999997	2.86231	0.0238593	0.012214	0.129075	0.0910127
chr7	128749403	128749502	3408481	0	+	0.383838	(0.378,0.408]	chr7	318435	2	INTRON	INTRON	CALU	ENSG00000128595.17	ENST00000535011.6:ENST00000542996.6:ENST00000249364.9:ENST00000449187.6:ENST00000479257.5	protein_coding	protein_coding	protein_coding	protein_coding	8	116	2	2.44367	2.5039	2.56413	0.0024299	7.28566e-4	0.0444645	0.0245975
chr16	84725489	84725588	6410158	0	+	0.484848	(0.476,0.515]	chr16	615272	86	INTRON	INTRON	USP10	ENSG00000103194.16	ENST00000562743.5:ENST00000540269.6:ENST00000563892.5:ENST00000562092.1:ENST00000569511.5:ENST00000219473.12:ENST00000570191.5:ENST00000563048.5:ENST00000562283.5:ENST00000563386.5:ENST00000569038.5:ENST00000570053.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	87	2	2.34867	2.50389	2.65911	0.00539703	0.00116074	0.0644048	0.0314098
chr19	5650777	5650877	7005584	0	+	0.6	(0.57,1]	chr19	694989	4	SS3_PROX	SS3_PROX:INTRON	SAFB	ENSG00000160633.13	ENST00000589863.5:ENST00000588852.2:ENST00000292123.9:ENST00000592224.5:ENST00000586934.5:ENST00000454510.5:ENST00000592707.5:ENST00000592396.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	35	2	2.22366	2.503875	2.78409	0.0116033	0.00344378	0.0889104	0.0539802
chr1	243306736	243306830	345380	0	+	0.382979	(0.378,0.408]	chr1	40233	3	INTRON	INTRON	SDCCAG8	ENSG00000054282.16	ENST00000366541.8:ENST00000435549.1	protein_coding	protein_coding	protein_coding	protein_coding	7	78	2	1.49864	2.5038549999999997	3.50907	0.0302065	0.00127828	0.142764	0.0326395
chr7	97170612	97170712	3357490	0	+	0.34	(0.32,0.35]	chr7	313218	274	INTRON	INTRON	SDHAF3	ENSG00000196636.8	ENST00000432641.3:ENST00000360382.4:ENST00000479853.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	54	2	2.37794	2.50382	2.6297	0.0498601	0.00476699	0.156383	0.0636201
chr19	32583208	32583304	7049620	0	+	0.395833	(0.378,0.408]	chr19	702935	6	INTRON	INTRON	PDCD5	ENSG00000105185.12	ENST00000590247.7:ENST00000419343.7:ENST00000221784.8:ENST00000592786.5:ENST00000379316.3:ENST00000586035.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	85	2	1.64762	2.5038	3.35998	0.0136375	0.00230615	0.101785	0.0428247
chr1	6191642	6191740	366119	0	-	0.479592	(0.476,0.515]	chr1	43018	45	INTRON	INTRON	RPL22	ENSG00000116251.11	ENST00000234875.9:ENST00000480661.1:ENST00000497965.5:ENST00000471204.5:ENST00000465387.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	74	2	2.06898	2.5037849999999997	2.93859	0.0137491	0.00143107	0.10247	0.0340925
chr16	16635286	16635386	6312217	0	+	0.51	(0.476,0.515]	chr16	604106	14	INTRON	INTRON	ENSG00000260126	ENSG00000260126.2	ENST00000567465.2	lncRNA	lncRNA	lncRNA	lncRNA	12	171	2	2.35049	2.50378	2.65707	6.9061e-4	1.83793e-4	0.0240212	0.0123171
chr1	51859813	51859913	455107	0	-	0.42	(0.408,0.44]	chr1	54627	189	INTRON	INTRON	NRDC	ENSG00000078618.23	ENST00000354831.11:ENST00000539524.5:ENST00000352171.12:ENST00000491410.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	34	2	2.49258	2.50375	2.51492	0.0329839	0.0314608	0.144381	0.133816
chr1	224192131	224192231	321765	0	+	0.44	(0.408,0.44]	chr1	37047	4	SS3_PROX	SS3_PROX:INTRON	DEGS1	ENSG00000143753.13	ENST00000415210.5:ENST00000323699.9:ENST00000391877.3:ENST00000498813.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	34	2	2.49258	2.50375	2.51492	0.0329839	0.0314608	0.144381	0.133816
chr6	157833700	157833800	3015867	0	+	0.41	(0.408,0.44]	chr6	281353	36	INTRON	INTRON	SNX9	ENSG00000130340.17	ENST00000614703.4:ENST00000614800.4:ENST00000680863.1:ENST00000679814.1:ENST00000680464.1:ENST00000681186.1:ENST00000679732.1:ENST00000681183.1:ENST00000681534.1:ENST00000681651.1:ENST00000680089.1:ENST00000680078.1:ENST00000680974.1:ENST00000680095.1:ENST00000680015.1:ENST00000681138.1:ENST00000392185.8:ENST00000679790.1:ENST00000680495.1:ENST00000679691.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	34	2	2.49258	2.50375	2.51492	0.0329839	0.0314608	0.144381	0.133816
chrY	11206154	11206254	7930074	0	-	0.41	(0.408,0.44]	chrY	807176	427	INTRON	INTRON	ENSG00000278212	ENSG00000278212.3	ENST00000652671.1:ENST00000651211.2:ENST00000687423.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	2	34	2	2.49258	2.50375	2.51492	0.0329839	0.0314608	0.144381	0.133816
chr16	3460535	3460633	6281868	0	+	0.540816	(0.515,0.57]	chr16	601237	20	INTRON	INTRON	NAA60	ENSG00000122390.19	ENST00000572757.5:ENST00000573593.5:ENST00000570372.5:ENST00000575936.5:ENST00000407558.9:ENST00000424546.6:ENST00000575733.5:ENST00000649205.1:ENST00000572169.6:ENST00000573580.5:ENST00000574950.5:ENST00000649360.1:ENST00000574328.5:ENST00000421765.7:ENST00000360862.9:ENST00000414063.6:ENST00000577013.6:ENST00000572584.2:ENST00000571107.5:ENST00000572739.5:ENST00000576787.5:ENST00000571696.6:ENST00000573345.5:ENST00000575076.5:ENST00000576916.5:ENST00000572942.5:ENST00000570551.5:ENST00000574380.5:ENST00000572131.5:ENST00000648681.1:ENST00000570819.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	48	2	2.31902	2.5036750000000003	2.68833	0.0184931	0.00493032	0.108861	0.0646039
chr1	50894287	50894387	451596	0	-	0.37	(0.35,0.378]	chr1	54267	359	INTRON	INTRON	FAF1	ENSG00000185104.21	ENST00000396153.7:ENST00000487898.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	111	2	2.34722	2.503645	2.66007	0.00312988	0.00123668	0.0499376	0.0326427
chr3	152344021	152344121	1535741	0	+	0.36	(0.35,0.378]	chr3	160003	84	INTRON	INTRON	MBNL1	ENSG00000152601.18	ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000495875.6:ENST00000324210.10:ENST00000493459.5:ENST00000459747.1:ENST00000460591.5:ENST00000545754.5:ENST00000357472.7:ENST00000324196.9:ENST00000498502.5:ENST00000463374.5:ENST00000485910.5:ENST00000465907.6:ENST00000492948.5:ENST00000485509.5:ENST00000464596.5	protein_coding	protein_coding	protein_coding	protein_coding	3	52	2	2.24535	2.503635	2.76192	0.0647516	0.00265021	0.179192	0.0474328
chr17	48997384	48997474	6624602	0	+	0.566667	(0.515,0.57]	chr17	646582	1	UTR5	UTR5:EXON_MRNA	IGF2BP1	ENSG00000159217.10	ENST00000290341.8	protein_coding	protein_coding	protein_coding	protein_coding	13	156	2	2.30697	2.5036300000000002	2.70029	4.71195e-4	9.80062e-5	0.0196294	0.00892206
chr22	50404594	50404694	7544807	0	+	0.47	(0.44,0.476]	chr22	771041	101	INTRON	INTRON	PPP6R2	ENSG00000100239.16	ENST00000359139.7:ENST00000395741.7:ENST00000612753.5:ENST00000395744.7:ENST00000216061.9	protein_coding	protein_coding	protein_coding	protein_coding	4	54	2	2.03266	2.503585	2.97451	0.0155853	0.00853825	0.109411	0.0780043
chr6	15463550	15463650	2825125	0	+	0.47	(0.44,0.476]	chr6	265210	110	INTRON	INTRON	JARID2	ENSG00000008083.14	ENST00000341776.7:ENST00000397311.4	protein_coding	protein_coding	protein_coding	protein_coding	4	54	2	2.03266	2.503585	2.97451	0.0155853	0.00853825	0.109411	0.0780043
chr7	105305736	105305835	3603073	0	-	0.363636	(0.35,0.378]	chr7	336154	71	INTRON	INTRON	SRPK2	ENSG00000135250.17	ENST00000393651.8:ENST00000482897.5:ENST00000460391.5:ENST00000462282.5:ENST00000465112.5:ENST00000482862.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	50	2	2.14264	2.503575	2.86451	0.0274795	0.0109111	0.123904	0.0923273
chr10	37840908	37841008	4602432	0	-	0.43	(0.408,0.44]	chr10	423985	24	INTRON	INTRON	ZNF248	ENSG00000198105.16	ENST00000615949.6:ENST00000485560.5:ENST00000395867.8:ENST00000357328.8:ENST00000611278.4:ENST00000374648.7:ENST00000395873.7:ENST00000395874.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	61	2	2.40661	2.503545	2.60048	0.011475	0.00484324	0.0888882	0.0640618
chr2	167919539	167919639	1258998	0	-	0.41	(0.408,0.44]	chr2	133340	184	INTRON	INTRON	B3GALT1-AS1	ENSG00000235335.3	ENST00000430546.2:ENST00000657553.1:ENST00000670221.1:ENST00000436982.2	lncRNA	lncRNA	lncRNA	lncRNA	15	199	2	2.15188	2.50352	2.85516	5.37633e-4	1.17416e-4	0.0209765	0.0098177
chr3	12607617	12607717	1616852	0	-	0.47	(0.44,0.476]	chr3	166943	3	SS5_PROX	SS5_PROX:INTRON	RAF1	ENSG00000132155.14	ENST00000688543.1:ENST00000685348.1:ENST00000251849.9:ENST00000442415.7:ENST00000688444.1:ENST00000692093.1:ENST00000691724.1:ENST00000423275.6:ENST00000687326.1:ENST00000688803.1:ENST00000689876.1:ENST00000686455.1:ENST00000684903.1:ENST00000692830.1:ENST00000693312.1:ENST00000690460.1:ENST00000692773.1:ENST00000688625.1:ENST00000693664.1:ENST00000686762.1:ENST00000692311.1:ENST00000692558.1:ENST00000691779.1:ENST00000685738.1:ENST00000690397.1:ENST00000687923.1:ENST00000688269.1:ENST00000693705.1:ENST00000689097.1:ENST00000691899.1:ENST00000689914.1:ENST00000690625.1:ENST00000689389.1:ENST00000687257.1:ENST00000686409.1:ENST00000685653.1:ENST00000689540.1:ENST00000691396.1:ENST00000685437.1:ENST00000689418.1:ENST00000465826.6:ENST00000687940.1:ENST00000689481.1:ENST00000693069.1:ENST00000491290.2:ENST00000686479.1:ENST00000691268.1:ENST00000689033.1:ENST00000685959.1:ENST00000416093.2:ENST00000692777.1:ENST00000689226.1:ENST00000687348.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	54	2	1.92837	2.503495	3.07862	0.0222222	0.0060153	0.124303	0.0674604
chr4	25159960	25160058	2119434	0	-	0.520408	(0.515,0.57]	chr4	209329	3	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SEPSECS	ENSG00000109618.13	ENST00000382103.7:ENST00000681948.1:ENST00000680824.1:ENST00000680581.1:ENST00000681341.1:ENST00000358971.7:ENST00000514585.5:ENST00000681640.1:ENST00000681166.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	53	2	2.08547	2.50331	2.92115	0.0289426	0.00110258	0.1274	0.03038
chr1	1272280	1272352	359184	0	-	0.347222	(0.32,0.35]	chr1	41487	3	INTRON	INTRON	UBE2J2	ENSG00000160087.21	ENST00000450390.6:ENST00000349431.11:ENST00000347370.6:ENST00000400929.6:ENST00000464036.5:ENST00000360466.6:ENST00000400930.8:ENST00000473215.5:ENST00000435198.5:ENST00000509720.5:ENST00000491779.5:ENST00000466752.5:ENST00000503294.5:ENST00000477894.5:ENST00000422076.5:ENST00000502382.1:ENST00000461142.3:ENST00000488418.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	103	2	2.44057	2.5032300000000003	2.56589	0.00466047	0.00204522	0.0600108	0.041908
chr7	110877493	110877593	3617252	0	-	0.42	(0.408,0.44]	chr7	337078	1518	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000487733.5:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	46	2	2.11447	2.5031999999999996	2.89193	0.0285207	0.00950364	0.12666	0.0863579
chr7	150281852	150281952	3673233	0	-	0.5	(0.476,0.515]	chr7	340876	324	INTRON	INTRON	ACTR3C	ENSG00000106526.11	ENST00000478393.5:ENST00000683684.1:ENST00000252071.8	protein_coding	protein_coding	protein_coding	protein_coding	6	87	2	2.31529	2.503165	2.69104	0.00614783	9.94264e-4	0.0676501	0.0290397
chr16	24543477	24543576	6327694	0	+	0.575758	(0.57,1]	chr16	605824	23	INTRON	INTRON	RBBP6	ENSG00000122257.20	ENST00000564314.5:ENST00000567686.5:ENST00000568015.5:ENST00000319715.10:ENST00000452655.6:ENST00000381039.7:ENST00000646282.1:ENST00000348022.6	protein_coding	protein_coding	protein_coding	protein_coding	5	39	2	2.43624	2.5031	2.56996	0.00499145	0.00279586	0.0646039	0.0469265
chr8	26346228	26346327	3716649	0	+	0.484848	(0.476,0.515]	chr8	345395	59	INTRON	INTRON	PPP2R2A	ENSG00000221914.11	ENST00000380737.8:ENST00000520329.5:ENST00000518254.5:ENST00000524169.5:ENST00000518397.5:ENST00000522535.5:ENST00000665949.1:ENST00000521095.5:ENST00000660435.1:ENST00000523925.5:ENST00000524099.5:ENST00000315985.7:ENST00000519636.5:ENST00000522482.5:ENST00000521557.5:ENST00000519439.5:ENST00000521484.5:ENST00000523964.5:ENST00000667651.1:ENST00000657943.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	56	2	2.37448	2.5030799999999997	2.63168	0.0237106	0.00419067	0.118716	0.0591344
chr7	75233604	75233703	3557771	0	-	0.555556	(0.515,0.57]	chr7	331396	160	INTRON	INTRON	GTF2IP1	ENSG00000277053.4	ENST00000622829.4:ENST00000616377.4	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	4	48	2	1.60221	2.503045	3.40388	0.0581855	0.00142538	0.188704	0.0340865
chr7	128319979	128320078	3635008	0	-	0.525253	(0.515,0.57]	chr7	337845	15	INTRON	INTRON	RBM28	ENSG00000106344.8	ENST00000223073.6:ENST00000481788.1:ENST00000415472.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	48	2	1.60221	2.503045	3.40388	0.0581855	0.00142538	0.188704	0.0340865
chr14	21265612	21265709	5835130	0	-	0.556701	(0.515,0.57]	chr14	554469	2	INTRON	INTRON	HNRNPC	ENSG00000092199.19	ENST00000336053.10:ENST00000553300.6:ENST00000554969.5:ENST00000556142.5:ENST00000554455.5:ENST00000553753.5:ENST00000555309.5:ENST00000555914.5:ENST00000557442.5:ENST00000556628.5:ENST00000556513.5:ENST00000555883.5:ENST00000557201.5:ENST00000420743.6:ENST00000554539.5:ENST00000554383.5:ENST00000555215.5:ENST00000555137.5:ENST00000554891.5:ENST00000556226.5:ENST00000555176.5:ENST00000553614.5:ENST00000557336.1:ENST00000557768.1:ENST00000557033.1:ENST00000555127.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	152	2	2.31075	2.50298	2.69521	0.00124389	6.03496e-5	0.0328153	0.00682472
chr10	927630	927730	4542547	0	-	0.34	(0.32,0.35]	chr10	419310	28	INTRON	INTRON	LARP4B	ENSG00000107929.16	ENST00000316157.8:ENST00000690516.1:ENST00000476529.5:ENST00000406525.6:ENST00000481118.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	72	2	1.76503	2.5029500000000002	3.24087	0.0240772	0.00420518	0.129859	0.0572185
chr11	66644843	66644943	4811094	0	+	0.37	(0.35,0.378]	chr11	447902	1	SS5_PROX	SS5_PROX:INTRON	RBM14-RBM4:RBM4	ENSG00000248643.5:ENSG00000173933.21	ENST00000412278.2:ENST00000500635.2:ENST00000396053.9:ENST00000408993.6:ENST00000578778.5:ENST00000398692.8:ENST00000310092.12:ENST00000528039.5:ENST00000506523.6:ENST00000530235.1:ENST00000409406.1:ENST00000515838.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	60	2	1.71046	2.50288	3.2953	0.0441269	0.0031465	0.162255	0.0500431
chr21	36375582	36375677	7404268	0	+	0.4	(0.378,0.408]	chr21	754378	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	MORC3	ENSG00000159256.13	ENST00000400485.6:ENST00000487909.5:ENST00000546482.5:ENST00000549948.5:ENST00000551788.5:ENST00000551367.5:ENST00000552581.5:ENST00000547657.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	11	156	2	1.95186	2.50286	3.05386	0.00480217	4.83737e-5	0.0602209	0.00567485
chr10	45758618	45758716	4430013	0	+	0.520408	(0.515,0.57]	chr10	408373	11	INTRON	INTRON	WASHC2C	ENSG00000172661.20	ENST00000359860.7:ENST00000374362.6:ENST00000540872.6:ENST00000537517.6:ENST00000623400.4	protein_coding	protein_coding	protein_coding	protein_coding	4	53	2	2.32836	2.5028449999999998	2.67733	0.0126662	0.00366712	0.0982897	0.0535094
chr16	4473892	4473992	6437616	0	-	0.53	(0.515,0.57]	chr16	619910	4	SS5_PROX	SS5_PROX:INTRON	NMRAL1	ENSG00000153406.14	ENST00000574733.5:ENST00000283429.11:ENST00000404295.7:ENST00000574425.5:ENST00000571291.5:ENST00000573520.5:ENST00000573571.1:ENST00000575002.5:ENST00000575557.5:ENST00000576935.5:ENST00000575995.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	10	121	2	2.47855	2.5028449999999998	2.52714	5.02001e-4	4.78859e-4	0.0202992	0.020217099999999998
chr16	28956837	28956935	6334864	0	+	0.44898	(0.44,0.476]	chr16	606675	1	INTRON	INTRON	NFATC2IP	ENSG00000176953.13	ENST00000564978.5:ENST00000320805.9:ENST00000562977.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	100	2	2.44812	2.5027299999999997	2.55734	0.00368597	7.72402e-4	0.0535094	0.0255867
chr7	123720321	123720421	3632374	0	-	0.28	[0,0.28]	chr7	337581	107	INTRON	INTRON	WASL	ENSG00000106299.8	ENST00000223023.5	protein_coding	protein_coding	protein_coding	protein_coding	4	78	2	2.02929	2.502725	2.97616	0.0189138	0.0128425	0.118303	0.0926667
chr5	132958272	132958372	2725217	0	-	0.47	(0.44,0.476]	chr5	256349	207	INTRON	INTRON	AFF4	ENSG00000072364.13	ENST00000265343.10:ENST00000378595.7:ENST00000491831.5:ENST00000465484.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	55	2	1.49942	2.50263	3.50584	0.0792118	8.66138e-4	0.199574	0.0266729
chr8	11864275	11864375	3908822	0	-	0.45	(0.44,0.476]	chr8	358218	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	CTSB	ENSG00000164733.22	ENST00000677671.1:ENST00000678092.1:ENST00000679128.1:ENST00000677873.1:ENST00000676691.1:ENST00000678598.1:ENST00000353047.11:ENST00000677650.1:ENST00000526481.7:ENST00000676825.1:ENST00000678242.1:ENST00000677366.1:ENST00000677544.1:ENST00000530640.7:ENST00000677418.1:ENST00000677047.1:ENST00000676502.1:ENST00000531089.6:ENST00000678629.1:ENST00000678145.1:ENST00000678929.1:ENST00000677819.1:ENST00000677415.1:ENST00000678357.1:ENST00000676755.1:ENST00000679051.1:ENST00000453527.7:ENST00000678067.1:ENST00000679140.1:ENST00000677082.1:ENST00000533455.6:ENST00000531551.5:ENST00000534382.6:ENST00000679214.1:ENST00000531502.6:ENST00000534510.6:ENST00000677865.1:ENST00000533572.6:ENST00000345125.8:ENST00000526645.6:ENST00000534149.6:ENST00000505496.7:ENST00000532392.2:ENST00000676843.1:ENST00000524500.6:ENST00000525076.6:ENST00000527215.7:ENST00000528965.2:ENST00000532656.7:ENST00000526195.6:ENST00000678615.1:ENST00000527243.6:ENST00000530296.6:ENST00000534636.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	83	2	2.15726	2.50263	2.848	0.00508124	0.00215274	0.0646039	0.0417866
chr4	70821555	70821652	2155630	0	-	0.412371	(0.408,0.44]	chr4	212358	3	INTRON	INTRON	GRSF1	ENSG00000132463.15	ENST00000254799.11:ENST00000505068.5:ENST00000499044.6:ENST00000502323.5:ENST00000514161.5:ENST00000506453.1:ENST00000508091.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	64	2	1.88062	2.5026	3.12458	0.0534548	4.61817e-4	0.162935	0.0194611
chr9	130598467	130598566	4213282	0	+	0.393939	(0.378,0.408]	chr9	386274	25	INTRON	INTRON	FUBP3	ENSG00000107164.16	ENST00000319725.10:ENST00000650723.1:ENST00000465949.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	64	2	2.05897	2.5025500000000003	2.94613	0.0339294	0.00112461	0.134508	0.0308177
chr6	15261955	15262055	2823105	0	+	0.52	(0.515,0.57]	chr6	265190	126	INTRON	INTRON	JARID2	ENSG00000008083.14	ENST00000341776.7:ENST00000397311.4	protein_coding	protein_coding	protein_coding	protein_coding	6	72	2	2.12882	2.5025399999999998	2.87626	0.005888	0.00136224	0.0670089	0.0339121
chr2	177249036	177249135	1275690	0	-	0.525253	(0.515,0.57]	chr2	134708	144	INTRON	INTRON	NFE2L2	ENSG00000116044.16	ENST00000397063.8:ENST00000464747.5:ENST00000397062.8:ENST00000446151.6:ENST00000449627.1:ENST00000448782.5:ENST00000430047.1:ENST00000586532.5:ENST00000421929.5:ENST00000423513.5:ENST00000588123.1:ENST00000477534.1:ENST00000462023.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	52	2	2.27238	2.5024800000000003	2.73258	0.0161808	0.00260192	0.101453	0.0470772
chr1	32386278	32386349	415112	0	-	0.380282	(0.378,0.408]	chr1	50083	1	SS5_PROX	SS5_PROX:INTRON	BSDC1	ENSG00000160058.19	ENST00000455895.7:ENST00000444377.5:ENST00000341071.11:ENST00000526031.5:ENST00000419121.6:ENST00000446293.6:ENST00000373520.8:ENST00000527513.5:ENST00000527163.5:ENST00000530485.1:ENST00000474414.5:ENST00000530876.5:ENST00000530753.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	173	2	2.43387	2.50244	2.57101	5.80887e-4	2.83933e-4	0.0223753	0.0150568
chr6	36916444	36916509	2855116	0	+	0.446154	(0.44,0.476]	chr6	269899	1	CDS	CDS:EXON_MRNA	C6orf89	ENSG00000198663.17	ENST00000359359.6:ENST00000355190.7:ENST00000373685.1:ENST00000480824.7	protein_coding	protein_coding	protein_coding	protein_coding	6	70	2	1.92621	2.502415	3.07862	0.00813281	0.0060153	0.0810802	0.0674604
chr15	44712520	44712616	6015673	0	+	0.489583	(0.476,0.515]	chr15	573062	1	INTRON	INTRON	B2M	ENSG00000166710.23	ENST00000695792.1:ENST00000559720.5:ENST00000561424.5:ENST00000559916.1:ENST00000648006.3:ENST00000349264.10:ENST00000557901.5:ENST00000559907.5:ENST00000560681.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	55	2	1.93059	2.502405	3.07422	0.023762	0.00506023	0.118822	0.0646039
chr5	154861928	154862025	2527709	0	+	0.515464	(0.515,0.57]	chr5	241732	17	INTRON	INTRON	CNOT8	ENSG00000155508.14	ENST00000521174.5:ENST00000523698.5:ENST00000517876.5:ENST00000520472.5:ENST00000519211.5:ENST00000522458.5:ENST00000403027.6:ENST00000521450.5:ENST00000519903.5:ENST00000517568.5:ENST00000524105.5:ENST00000519430.5:ENST00000285896.11:ENST00000521583.5:ENST00000520671.5:ENST00000518028.5:ENST00000519404.5:ENST00000521729.5:ENST00000519394.5:ENST00000518775.5:ENST00000522644.5:ENST00000521402.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	52	2	2.48902	2.5023150000000003	2.51561	0.00760558	0.00635044	0.0749571	0.0723103
chr19	17581919	17582015	7031176	0	+	0.541667	(0.515,0.57]	chr19	700288	6	UTR3	UTR3:EXON_MRNA	COLGALT1	ENSG00000130309.12	ENST00000252599.9:ENST00000690947.1:ENST00000690106.1:ENST00000690841.1:ENST00000593832.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	42	477	2	1.8974	2.502275	3.10715	2.76035e-4	2.49689e-7	0.0147997	2.66331e-4
chrX	18921389	18921488	7771384	0	-	0.434343	(0.408,0.44]	chrX	794309	8	INTRON	INTRON	PHKA2	ENSG00000044446.12	ENST00000379942.5	protein_coding	protein_coding	protein_coding	protein_coding	4	55	2	1.64062	2.5022	3.36378	0.0557275	0.0016048	0.165463	0.0367961
chr15	56951579	56951679	6032441	0	+	0.32	(0.28,0.32]	chr15	574663	301	INTRON	INTRON	TCF12	ENSG00000140262.18	ENST00000438423.6:ENST00000267811.9:ENST00000333725.10:ENST00000560190.5:ENST00000559609.5:ENST00000558908.5:ENST00000557843.5:ENST00000557947.5:ENST00000561152.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	72	2	2.03106	2.502195	2.97333	0.0208123	0.00857834	0.111549	0.083729
chr20	62146786	62146886	7297513	0	+	0.54	(0.515,0.57]	chr20	742244	25	INTRON	INTRON	SS18L1	ENSG00000184402.15	ENST00000331758.8:ENST00000450482.5	protein_coding	protein_coding	protein_coding	protein_coding	3	39	2	1.9459	2.502145	3.05839	0.0429089	0.00485936	0.148082	0.0640618
chr3	47102746	47102845	1680981	0	-	0.373737	(0.35,0.378]	chr3	171580	8	INTRON	INTRON	SETD2	ENSG00000181555.22	ENST00000691544.1:ENST00000638947.2:ENST00000686876.1:ENST00000431180.5:ENST00000409792.4:ENST00000330022.11:ENST00000686773.1:ENST00000685005.1:ENST00000690461.1:ENST00000685505.1:ENST00000692883.1:ENST00000693321.1:ENST00000688290.1:ENST00000691902.1:ENST00000690157.1:ENST00000692362.1:ENST00000445387.5:ENST00000685399.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	120	2	2.06294	2.50213	2.94132	0.00222761	0.0016832	0.0435144	0.0370386
chr7	87878824	87878923	3346697	0	+	0.353535	(0.35,0.378]	chr7	311845	2	INTRON	INTRON	DBF4	ENSG00000006634.8	ENST00000413643.5:ENST00000265728.6:ENST00000431138.5:ENST00000486925.1:ENST00000430279.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	68	2	2.01378	2.50211	2.99044	0.00952336	0.00894806	0.0863913	0.0799922
chr3	172066818	172066918	1559816	0	+	0.29	(0.28,0.32]	chr3	161527	195	INTRON	INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000421757.5:ENST00000469491.5:ENST00000336824.8:ENST00000423424.5:ENST00000416957.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	94	2	2.33381	2.50209	2.67037	0.0174951	0.00141946	0.104863	0.034662
chr15	55189001	55189099	6179933	0	-	0.55102	(0.515,0.57]	chr15	589063	23	INTRON	INTRON	RSL24D1	ENSG00000137876.11	ENST00000260443.9:ENST00000569386.2:ENST00000677172.1:ENST00000677147.1:ENST00000562895.2:ENST00000677989.1:ENST00000677730.1:ENST00000677092.1:ENST00000562993.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	39	2	2.01737	2.50207	2.98677	0.0352218	0.00632549	0.137535	0.0722266
chr19	21763505	21763604	7159265	0	-	0.555556	(0.515,0.57]	chr19	723737	96	INTRON	INTRON	ZNF100	ENSG00000197020.12	ENST00000358296.11:ENST00000598026.1:ENST00000596452.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	39	2	2.01737	2.50207	2.98677	0.0352218	0.00632549	0.137535	0.0722266
chr9	112504305	112504405	4185963	0	+	0.53	(0.515,0.57]	chr9	381813	168	INTRON	INTRON	KIAA1958	ENSG00000165185.15	ENST00000337530.11:ENST00000536272.5:ENST00000374244.3	protein_coding	protein_coding	protein_coding	protein_coding	3	39	2	2.01737	2.50207	2.98677	0.0352218	0.00632549	0.137535	0.0722266
chr1	96724492	96724592	167968	0	+	0.51	(0.476,0.515]	chr1	18215	5	INTRON	INTRON	PTBP2	ENSG00000117569.19	ENST00000482253.5:ENST00000675735.1:ENST00000609116.5:ENST00000674951.1:ENST00000675080.1:ENST00000426398.3:ENST00000460706.5:ENST00000370197.5:ENST00000370198.5:ENST00000476419.5:ENST00000676292.1:ENST00000676096.1:ENST00000675365.1:ENST00000674579.1:ENST00000675401.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	56	2	2.05714	2.50203	2.94692	0.0156961	0.00794331	0.101453	0.0797304
chr3	8897996	8898095	1609990	0	-	0.50505	(0.476,0.515]	chr3	166142	72	INTRON	INTRON	RAD18	ENSG00000070950.10	ENST00000427329.5:ENST00000264926.7:ENST00000415439.5:ENST00000473069.1:ENST00000429790.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	45	2	1.92984	2.50203	3.07422	0.0466474	0.00506023	0.151522	0.0646039
chr5	34180292	34180391	2599887	0	-	0.50505	(0.476,0.515]	chr5	247047	8	INTRON	INTRON	GUSBP18	ENSG00000215158.9	ENST00000514048.5:ENST00000507274.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	3	45	2	1.92984	2.50203	3.07422	0.0466474	0.00506023	0.151522	0.0646039
chr12	112229101	112229197	5416171	0	-	0.489583	(0.476,0.515]	chr12	517453	3	SS3_PROX	SS3_PROX:INTRON	HECTD4	ENSG00000173064.14	ENST00000550722.5:ENST00000377560.9:ENST00000682272.1:ENST00000547519.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	45	2	1.99197	2.50197	3.01197	0.039572	0.00633162	0.143072	0.0722266
chr16	29550117	29550212	6471093	0	-	0.410526	(0.408,0.44]	chr16	625241	10	INTRON	INTRON	ENSG00000288632:SMG1P2	ENSG00000288632.1:ENSG00000205534.6	ENST00000675579.1:ENST00000566127.1	lncRNA	lncRNA	lncRNA:transcribed_unprocessed_pseudogene	lncRNA:transcribed_unprocessed_pseudogene	4	55	2	2.22268	2.50195	2.78122	0.015812	0.00770925	0.101453	0.0784002
chr10	125057131	125057231	4713300	0	-	0.47	(0.44,0.476]	chr10	434897	176	INTRON	INTRON	CTBP2	ENSG00000175029.17	ENST00000337195.9:ENST00000411419.6:ENST00000494626.6:ENST00000531469.5:ENST00000460976.5:ENST00000476817.1:ENST00000530884.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	34	2	2.39604	2.5018900000000004	2.60774	0.0404291	0.0255874	0.161534	0.120269
chr19	16641956	16642053	7150601	0	-	0.443299	(0.44,0.476]	chr19	722442	1	INTRON	INTRON	SMIM7	ENSG00000214046.9	ENST00000465250.6:ENST00000481671.6:ENST00000594662.5:ENST00000597781.5:ENST00000598278.5:ENST00000593409.5	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	2	34	2	2.39604	2.5018900000000004	2.60774	0.0404291	0.0255874	0.161534	0.120269
chr5	133078895	133078994	2488278	0	+	0.474747	(0.44,0.476]	chr5	237508	16	INTRON	INTRON	HSPA4	ENSG00000170606.16	ENST00000304858.7:ENST00000504328.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	34	2	2.39604	2.5018900000000004	2.60774	0.0404291	0.0255874	0.161534	0.120269
chr7	128309604	128309703	3634899	0	-	0.454545	(0.44,0.476]	chr7	337817	121	UTR3	UTR3:EXON_MRNA	RBM28	ENSG00000106344.8	ENST00000223073.6	protein_coding	protein_coding	protein_coding	protein_coding	10	142	2	2.50024	2.501875	2.50351	7.41088e-4	5.11411e-4	0.0250148	0.0203232
chr10	92509849	92509949	4664757	0	-	0.41	(0.408,0.44]	chr10	429845	4	SS5_PROX	SS5_PROX:INTRON	IDE	ENSG00000119912.18	ENST00000265986.11:ENST00000679312.1:ENST00000650060.1:ENST00000679089.1:ENST00000677569.1:ENST00000677096.1:ENST00000679222.1:ENST00000676540.1:ENST00000678026.1:ENST00000676626.1:ENST00000679069.1:ENST00000678977.1:ENST00000679232.1:ENST00000678844.1:ENST00000679174.1:ENST00000678673.1:ENST00000676816.1:ENST00000678715.1:ENST00000678458.1:ENST00000677079.1:ENST00000677434.1:ENST00000678248.1:ENST00000478361.6:ENST00000677978.1:ENST00000677196.1:ENST00000677953.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	56	2	2.3494	2.5018000000000002	2.6542	0.0227514	0.00462504	0.117618	0.062717
chr11	67607224	67607298	4815471	0	+	0.594595	(0.57,1]	chr11	448555	3	EXON_MRNA	EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NDUFV1	ENSG00000167792.13	ENST00000647561.1:ENST00000532303.5:ENST00000532244.5:ENST00000528328.1:ENST00000322776.11:ENST00000529927.5:ENST00000415352.6:ENST00000532343.5:ENST00000524838.5:ENST00000524876.5:ENST00000528548.5:ENST00000529867.5:ENST00000533075.5:ENST00000534139.5:ENST00000525086.5:ENST00000530014.5:ENST00000530103.5:ENST00000532260.1:ENST00000530638.1:ENST00000526138.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	60	2	2.34135	2.501765	2.66218	0.00191867	3.14338e-4	0.0405205	0.0163194
chr19	16077705	16077780	7025978	0	+	0.373333	(0.35,0.378]	chr19	699174	2	SS3_PROX	SS3_PROX:INTRON	TPM4	ENSG00000167460.17	ENST00000646974.2:ENST00000586499.6:ENST00000647464.2:ENST00000668959.1:ENST00000590180.3:ENST00000655004.1:ENST00000642789.1:ENST00000653979.1:ENST00000645471.1:ENST00000659595.1:ENST00000647037.1:ENST00000587201.6:ENST00000643579.2:ENST00000586193.6:ENST00000643494.1:ENST00000670382.1:ENST00000300933.9:ENST00000646575.1:ENST00000586833.7:ENST00000642221.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	116	2	2.01724	2.501655	2.98607	0.00520179	9.86191e-4	0.0633615	0.0288537
chr1	70207474	70207573	142447	0	+	0.323232	(0.32,0.35]	chr1	15965	13	INTRON	INTRON	SRSF11	ENSG00000116754.14	ENST00000370951.5:ENST00000463877.1:ENST00000687381.1:ENST00000370950.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	40	2	2.31405	2.50163	2.68921	0.0517107	0.0230336	0.176696	0.118056
chr14	37023392	37023492	5876521	0	-	0.35	(0.32,0.35]	chr14	558013	1480	INTRON	INTRON	SLC25A21	ENSG00000183032.12	ENST00000331299.6:ENST00000555449.5:ENST00000557611.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	40	2	2.31405	2.50163	2.68921	0.0517107	0.0230336	0.176696	0.118056
chr2	28905632	28905714	725287	0	+	0.341463	(0.32,0.35]	chr2	83791	2	INTRON	INTRON	WDR43	ENSG00000163811.12	ENST00000407426.8:ENST00000440983.1:ENST00000296126.6	protein_coding	protein_coding	protein_coding	protein_coding	2	40	2	2.31405	2.50163	2.68921	0.0517107	0.0230336	0.176696	0.118056
chr1	42282069	42282169	431903	0	-	0.31	(0.28,0.32]	chr1	52324	30	INTRON	INTRON	FOXJ3	ENSG00000198815.9	ENST00000372573.5:ENST00000372572.5:ENST00000361776.5:ENST00000545068.5:ENST00000361346.6:ENST00000445886.5	protein_coding	protein_coding	protein_coding	protein_coding	2	42	2	2.32871	2.50162	2.67453	0.0581621	0.021289	0.167723	0.123318
chr1	145777541	145777641	540189	0	-	0.31	(0.28,0.32]	chr1	63364	38	INTRON	INTRON	RNF115	ENSG00000265491.5	ENST00000582693.5	protein_coding	protein_coding	protein_coding	protein_coding	2	42	2	2.32871	2.50162	2.67453	0.0581621	0.021289	0.167723	0.123318
chr17	22094405	22094505	6578607	0	+	0.31	(0.28,0.32]	chr17	639556	31	INTRON	INTRON	UBBP4	ENSG00000263563.7	ENST00000648259.1:ENST00000688301.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	2	42	2	2.32871	2.50162	2.67453	0.0581621	0.021289	0.167723	0.123318
chr17	82636311	82636411	6853571	0	-	0.37	(0.35,0.378]	chr17	679381	4	SS5_PROX	SS5_PROX:INTRON	WDR45B	ENSG00000141580.16	ENST00000392325.9:ENST00000572583.5:ENST00000571835.5:ENST00000573616.5:ENST00000571817.5:ENST00000574828.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	51	2	2.32443	2.501585	2.67874	0.0544216	0.00373022	0.164972	0.0561984
chr18	57607223	57607314	6980557	0	-	0.428571	(0.408,0.44]	chr18	690670	2	CDS	CDS:UTR3:EXON_MRNA	NARS1	ENSG00000134440.12	ENST00000256854.10:ENST00000586807.5:ENST00000411676.6:ENST00000540592.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	102	2	2.11401	2.50157	2.88913	0.00230448	0.00185044	0.0440636	0.0388609
chr14	30728823	30728922	5676138	0	+	0.484848	(0.476,0.515]	chr14	540758	59	INTRON	INTRON	SCFD1	ENSG00000092108.22	ENST00000678760.1:ENST00000677690.1:ENST00000678124.1:ENST00000678716.1:ENST00000678402.1:ENST00000679153.1:ENST00000678516.1:ENST00000678802.1:ENST00000679096.1:ENST00000679102.1:ENST00000678475.1:ENST00000676509.1:ENST00000676750.1:ENST00000679165.1:ENST00000676658.1:ENST00000678399.1:ENST00000677413.1:ENST00000554437.6:ENST00000676834.1:ENST00000678858.1:ENST00000553693.6:ENST00000676914.1:ENST00000676465.1:ENST00000676812.1:ENST00000678669.1:ENST00000676520.1:ENST00000676876.1:ENST00000677617.1:ENST00000676954.1:ENST00000677456.1:ENST00000678735.1:ENST00000679342.1:ENST00000677176.1:ENST00000557076.6:ENST00000677637.1:ENST00000677974.1:ENST00000458591.7:ENST00000484733.6:ENST00000556768.5:ENST00000544052.6:ENST00000463622.6:ENST00000676674.1:ENST00000677340.1:ENST00000311943.11:ENST00000679075.1:ENST00000678396.1:ENST00000676473.1:ENST00000396629.6:ENST00000678579.1:ENST00000678104.1:ENST00000676817.1:ENST00000677833.1:ENST00000556486.5:ENST00000677334.1:ENST00000677576.1:ENST00000556256.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	54	2	2.11679	2.501545	2.8863	0.0115627	0.0111679	0.0962115	0.0877435
chr6	35366629	35366729	2852219	0	+	0.5	(0.476,0.515]	chr6	269491	191	INTRON	INTRON	PPARD	ENSG00000112033.14	ENST00000418635.6:ENST00000448077.6:ENST00000360694.8:ENST00000311565.4:ENST00000337400.6	protein_coding	protein_coding	protein_coding	protein_coding	4	54	2	2.11679	2.501545	2.8863	0.0115627	0.0111679	0.0962115	0.0877435
chr8	81711323	81711422	3979467	0	-	0.555556	(0.515,0.57]	chr8	364623	21	INTRON	INTRON	ZFAND1	ENSG00000104231.11	ENST00000524305.5:ENST00000220669.10:ENST00000523096.5:ENST00000522520.5:ENST00000522032.1:ENST00000519464.5:ENST00000521895.5:ENST00000521287.5:ENST00000523431.5:ENST00000520635.5:ENST00000519523.5:ENST00000517588.5:ENST00000520604.5:ENST00000523361.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	56	2	1.94449	2.50144	3.05839	0.0122196	0.00485936	0.0910127	0.0640618
chr12	24867936	24868036	5297093	0	-	0.46	(0.44,0.476]	chr12	503853	176	INTRON	INTRON	BCAT1	ENSG00000060982.15	ENST00000261192.12:ENST00000538118.5:ENST00000342945.9:ENST00000539282.5:ENST00000539780.5:ENST00000544418.1:ENST00000612790.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:processed_transcript	9	131	2	2.12263	2.50142	2.88021	0.00692375	5.62841e-5	0.0718189	0.00613846
chr7	105046308	105046408	3374945	0	+	0.33	(0.32,0.35]	chr7	315877	49	INTRON	INTRON	KMT2E	ENSG00000005483.22	ENST00000622386.2:ENST00000257745.9:ENST00000334884.9:ENST00000311117.8:ENST00000478990.5:ENST00000495267.5:ENST00000476671.5:ENST00000667857.1:ENST00000474203.5:ENST00000482560.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	121	2	2.27791	2.5013199999999998	2.72473	0.00433316	0.00121437	0.0579683	0.032255
chr22	38367398	38367498	7587522	0	-	0.5	(0.476,0.515]	chr22	776668	39	INTRON	INTRON	TPTEP2	ENSG00000244627.5	ENST00000428294.5:ENST00000407491.6:ENST00000443042.5:ENST00000457665.5:ENST00000381645.7:ENST00000443658.5:ENST00000381646.6	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	4	54	2	1.80284	2.501295	3.19975	0.033161	0.00383299	0.145899	0.0542786
chr4	39860022	39860122	2130990	0	-	0.37	(0.35,0.378]	chr4	210094	100	INTRON	INTRON	PDS5A	ENSG00000121892.15	ENST00000303538.13	protein_coding	protein_coding	protein_coding	protein_coding	6	92	2	2.05151	2.50128	2.95105	0.00998861	0.00115843	0.0843858	0.0313803
chr20	35720845	35720943	7336331	0	-	0.479592	(0.476,0.515]	chr20	747446	37	INTRON	INTRON	RBM39	ENSG00000131051.24	ENST00000253363.11:ENST00000639702.1:ENST00000656873.1:ENST00000463004.5:ENST00000361162.10:ENST00000461283.5:ENST00000403542.6:ENST00000338163.10:ENST00000528062.7:ENST00000429968.5:ENST00000444878.5:ENST00000665058.1:ENST00000492779.5:ENST00000448303.5:ENST00000615771.5:ENST00000490484.7:ENST00000494274.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	47	2	2.3223	2.501265	2.68023	0.0519312	0.00353671	0.159306	0.0546236
chr8	102381205	102381305	4012441	0	-	0.49	(0.476,0.515]	chr8	367237	192	INTRON	INTRON	UBR5	ENSG00000104517.13	ENST00000520539.6:ENST00000220959.8:ENST00000521922.5	protein_coding	protein_coding	protein_coding	protein_coding	3	47	2	2.3223	2.501265	2.68023	0.0519312	0.00353671	0.159306	0.0546236
chr8	108223268	108223365	4023006	0	-	0.402062	(0.378,0.408]	chr8	367643	13	INTRON	INTRON	EIF3E	ENSG00000104408.11	ENST00000678042.1:ENST00000678773.1:ENST00000677409.1:ENST00000676892.1:ENST00000523674.2:ENST00000677674.1:ENST00000220849.10:ENST00000678937.1:ENST00000677084.1:ENST00000676706.1:ENST00000518100.6:ENST00000677040.1:ENST00000676698.1:ENST00000522352.6:ENST00000521297.2:ENST00000677501.1:ENST00000519030.6:ENST00000519627.2:ENST00000518345.2:ENST00000522445.6:ENST00000678334.1:ENST00000678023.1:ENST00000678797.1:ENST00000677614.1:ENST00000676642.1:ENST00000677965.1:ENST00000678901.1:ENST00000678243.1:ENST00000676663.1:ENST00000679198.1:ENST00000521614.6:ENST00000678004.1:ENST00000678881.1:ENST00000677590.1:ENST00000677272.1:ENST00000676530.1:ENST00000677696.1:ENST00000519517.5:ENST00000519413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	56	2	1.99678	2.50123	3.00568	0.0177959	0.00811866	0.113452	0.0766625
chr8	92783675	92783775	3989942	0	-	0.53	(0.515,0.57]	chr8	365352	182	INTRON	INTRON	FLJ46284	ENSG00000248858.7	ENST00000504861.2	lncRNA	lncRNA	lncRNA	lncRNA	8	86	2	1.87376	2.501105	3.12845	0.00649501	4.79786e-4	0.0734388	0.0203136
chr7	123735319	123735418	3632524	0	-	0.292929	(0.28,0.32]	chr7	337581	257	INTRON	INTRON	WASL	ENSG00000106299.8	ENST00000223023.5	protein_coding	protein_coding	protein_coding	protein_coding	10	169	2	2.31374	2.501065	2.68839	0.00201131	7.97152e-4	0.04086	0.0258804
chr22	21839432	21839532	7561104	0	-	0.48	(0.476,0.515]	chr22	773388	312	INTRON	INTRON	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	14	194	2	2.41568	2.5010399999999997	2.5864	4.48739e-4	1.10067e-4	0.0196044	0.00888683
chr22	41942311	41942411	7592199	0	-	0.55	(0.515,0.57]	chr22	777596	22	INTRON	INTRON	CENPM	ENSG00000100162.15	ENST00000215980.10:ENST00000402338.5:ENST00000404067.5:ENST00000407253.7:ENST00000402420.1	protein_coding	protein_coding	protein_coding	protein_coding	4	53	2	2.4386	2.50083	2.56306	0.0247751	0.00326739	0.131869	0.0508595
chr1	54330140	54330239	462996	0	-	0.464646	(0.44,0.476]	chr1	55776	38	INTRON	INTRON	SSBP3	ENSG00000157216.16	ENST00000610401.5:ENST00000357475.9:ENST00000371319.8:ENST00000417664.7:ENST00000533946.6:ENST00000326956.12:ENST00000371320.8:ENST00000525990.1:ENST00000528787.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	61	2	2.44514	2.5008150000000002	2.55649	0.0087381	0.00670547	0.0845538	0.0707084
chr6	119339868	119339967	3205717	0	-	0.454545	(0.44,0.476]	chr6	298328	325	INTRON	INTRON	MAN1A1	ENSG00000111885.7	ENST00000368468.4	protein_coding	protein_coding	protein_coding	protein_coding	4	54	2	2.08211	2.500805	2.9195	0.0130715	0.0102021	0.0996047	0.0850389
chr7	107399120	107399220	3611375	0	-	0.46	(0.44,0.476]	chr7	336688	260	INTRON	INTRON	COG5	ENSG00000164597.15	ENST00000297135.9:ENST00000347053.8:ENST00000393603.7:ENST00000484237.5:ENST00000475638.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	54	2	2.08211	2.500805	2.9195	0.0130715	0.0102021	0.0996047	0.0850389
chr8	90329154	90329254	3793385	0	+	0.42	(0.408,0.44]	chr8	351786	820	INTRON	INTRON	LINC00534	ENSG00000253394.7	ENST00000662145.1:ENST00000655523.1:ENST00000517400.6:ENST00000658299.1:ENST00000663329.1:ENST00000658342.1:ENST00000523283.6:ENST00000655219.1:ENST00000662692.1:ENST00000667296.1:ENST00000667565.1:ENST00000523406.2:ENST00000659030.1:ENST00000653734.1:ENST00000654785.1:ENST00000524361.5:ENST00000668745.1:ENST00000666641.2:ENST00000661519.1:ENST00000671657.1:ENST00000655123.1:ENST00000663098.1:ENST00000670903.1:ENST00000654946.1	lncRNA	lncRNA	lncRNA	lncRNA	6	88	2	2.2644	2.50075	2.7371	0.00768371	7.83328e-4	0.0753803	0.0257505
chr6	7197714	7197814	2799269	0	+	0.5	(0.476,0.515]	chr6	263761	80	INTRON	INTRON	RREB1	ENSG00000124782.21	ENST00000379933.7:ENST00000471433.5:ENST00000379938.7:ENST00000349384.10:ENST00000334984.10:ENST00000475946.5:ENST00000483150.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	101	2	2.17892	2.500715	2.82251	0.0046578	6.78359e-4	0.0629753	0.023827
chr20	38421955	38422050	7342169	0	-	0.473684	(0.44,0.476]	chr20	748299	11	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	SNHG17	ENSG00000196756.14	ENST00000654008.2:ENST00000658076.1:ENST00000662982.2:ENST00000667188.1:ENST00000456953.7:ENST00000654183.2:ENST00000663540.2:ENST00000651115.2:ENST00000667835.1:ENST00000660885.2:ENST00000662213.1:ENST00000665233.2:ENST00000666268.2:ENST00000665735.1:ENST00000660558.2:ENST00000691280.1:ENST00000658488.2:ENST00000688336.1:ENST00000668054.2:ENST00000690441.1:ENST00000655520.2:ENST00000687490.1:ENST00000664626.1:ENST00000658051.1:ENST00000668042.1:ENST00000686971.1:ENST00000663187.1:ENST00000669114.1:ENST00000653343.1:ENST00000666225.1:ENST00000659186.1:ENST00000671309.1:ENST00000669405.1:ENST00000666806.1:ENST00000657665.1:ENST00000667282.1:ENST00000655311.1:ENST00000657868.1:ENST00000663534.1:ENST00000658141.1:ENST00000689917.1:ENST00000664073.2:ENST00000653697.1:ENST00000656320.1:ENST00000686814.1:ENST00000417578.7:ENST00000654853.1:ENST00000665440.1:ENST00000659102.1:ENST00000436764.7:ENST00000668482.2:ENST00000671249.1:ENST00000655692.1:ENST00000662568.1:ENST00000659255.1:ENST00000665693.1:ENST00000693250.1:ENST00000691368.1:ENST00000693227.1:ENST00000690361.1:ENST00000670051.1:ENST00000667912.1:ENST00000693665.1:ENST00000665181.1:ENST00000687532.1:ENST00000691386.1:ENST00000693684.1:ENST00000666331.1:ENST00000669480.1:ENST00000658905.1:ENST00000661252.1:ENST00000669137.1:ENST00000688133.1:ENST00000689414.1:ENST00000691314.1:ENST00000669033.1:ENST00000686145.1:ENST00000653938.1:ENST00000663784.1:ENST00000665003.1:ENST00000659400.1:ENST00000653753.1:ENST00000449469.5:ENST00000654389.1:ENST00000657429.1:ENST00000667412.1:ENST00000654092.1:ENST00000653277.1:ENST00000663955.1:ENST00000664964.1:ENST00000658324.1:ENST00000656023.1:ENST00000692262.1:ENST00000414142.5:ENST00000659753.1:ENST00000670958.1:ENST00000657216.2:ENST00000664636.1:ENST00000657843.1:ENST00000660189.1:ENST00000660064.1:ENST00000655198.1:ENST00000662572.1:ENST00000423536.6:ENST00000658455.1:ENST00000666419.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	4	54	2	1.87325	2.50062	3.12799	0.0265709	0.0050635	0.134088	0.0621733
chr22	41284800	41284900	7591140	0	-	0.45	(0.44,0.476]	chr22	777375	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	RANGAP1	ENSG00000100401.20	ENST00000356244.8:ENST00000405486.5:ENST00000422838.1	protein_coding	protein_coding	protein_coding	protein_coding	4	54	2	1.87325	2.50062	3.12799	0.0265709	0.0050635	0.134088	0.0621733
chr15	28239863	28239961	6123215	0	-	0.408163	(0.378,0.408]	chr15	583285	7	INTRON	INTRON	HERC2	ENSG00000128731.18	ENST00000261609.13	protein_coding	protein_coding	protein_coding	protein_coding	4	63	2	2.21238	2.500525	2.78867	0.0218124	0.00226991	0.11491	0.0437013
chr20	47213323	47213422	7348057	0	-	0.333333	(0.32,0.35]	chr20	749229	2	INTRON	INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000467200.6:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4	protein_coding	protein_coding	protein_coding	protein_coding	5	73	2	1.54741	2.50051	3.45361	0.0473733	0.00193809	0.169265	0.0399255
chr16	3134700	3134796	6433261	0	-	0.604167	(0.57,1]	chr16	619155	3	EXON_LNCRNA	EXON_LNCRNA:INTRON	ZNF213-AS1	ENSG00000263072.9	ENST00000674022.1:ENST00000673666.1:ENST00000572691.2:ENST00000664624.1:ENST00000657201.1:ENST00000657996.1:ENST00000576490.2:ENST00000692817.1:ENST00000686529.1:ENST00000691772.1:ENST00000685085.1:ENST00000686892.1:ENST00000571963.5:ENST00000573447.2:ENST00000571449.2:ENST00000652946.1:ENST00000658602.1:ENST00000575089.2	lncRNA	lncRNA	lncRNA	lncRNA	3	25	2	2.33295	2.50048	2.66801	0.0169968	0.0122896	0.110899	0.091087
chr19	898439	898539	7110780	0	-	0.6	(0.57,1]	chr19	714142	5	INTRON	INTRON	R3HDM4	ENSG00000198858.10	ENST00000589428.5:ENST00000361574.10:ENST00000587975.2:ENST00000591829.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	25	2	2.33295	2.50048	2.66801	0.0169968	0.0122896	0.110899	0.091087
chr12	104317452	104317548	5210320	0	+	0.385417	(0.378,0.408]	chr12	493238	12	INTRON	INTRON	TXNRD1	ENSG00000198431.17	ENST00000525566.6:ENST00000503506.6:ENST00000526691.5:ENST00000526390.5:ENST00000529546.5:ENST00000529751.1:ENST00000526580.5:ENST00000524698.5:ENST00000527688.5:ENST00000527335.5:ENST00000526950.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	47	2	1.88729	2.500445	3.1136	0.0532327	0.00443339	0.162538	0.061054
chr16	72520118	72520217	6517859	0	-	0.40404	(0.378,0.408]	chr16	631338	12	INTRON	INTRON	LINC01572	ENSG00000261008.8	ENST00000624829.4:ENST00000561611.2:ENST00000656218.1:ENST00000666555.2:ENST00000664155.1:ENST00000657725.1:ENST00000563770.5:ENST00000668081.1:ENST00000570152.2	lncRNA	lncRNA	lncRNA	lncRNA	3	47	2	1.88729	2.500445	3.1136	0.0532327	0.00443339	0.162538	0.061054
chr17	1391834	1391934	6699525	0	-	0.52	(0.515,0.57]	chr17	655552	217	INTRON	INTRON	YWHAE	ENSG00000108953.17	ENST00000264335.13:ENST00000571732.5:ENST00000573026.1:ENST00000573196.5:ENST00000575977.1:ENST00000469398.5:ENST00000486241.1:ENST00000489287.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	41	2	2.43783	2.500445	2.56306	0.0247751	0.00916404	0.131869	0.0812949
chr10	72402138	72402238	4644672	0	-	0.36	(0.35,0.378]	chr10	427373	222	INTRON	INTRON	MICU1	ENSG00000107745.20	ENST00000361114.10:ENST00000476605.7:ENST00000642044.1:ENST00000635239.1:ENST00000418483.6:ENST00000398763.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	37	2	2.39746	2.500435	2.60341	0.041314	0.0275785	0.161534	0.123904
chr11	68492167	68492267	4817647	0	+	0.46	(0.44,0.476]	chr11	448907	310	INTRON	INTRON	PPP6R3	ENSG00000110075.15	ENST00000530427.5:ENST00000528635.5:ENST00000529907.5:ENST00000533127.5:ENST00000534534.5:ENST00000529344.5:ENST00000524845.5:ENST00000393800.7:ENST00000265637.8:ENST00000524904.5:ENST00000393801.7:ENST00000265636.9:ENST00000529710.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	87	2	1.52906	2.50043	3.4718	0.017448	0.00136358	0.112716	0.0336321
chr7	111330883	111330983	3621791	0	-	0.34	(0.32,0.35]	chr7	337093	3670	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	83	2	1.5852	2.50037	3.41554	0.0351213	0.00153152	0.137535	0.0361484
chrX	130407973	130408070	7722660	0	+	0.402062	(0.378,0.408]	chrX	789987	37	INTRON	INTRON	RBMX2	ENSG00000134597.17	ENST00000305536.11:ENST00000469953.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	47	2	1.94681	2.5003699999999998	3.05393	0.0457723	0.00551532	0.149888	0.0672816
chr17	16043474	16043573	6733455	0	-	0.383838	(0.378,0.408]	chr17	660500	26	INTRON	INTRON	NCOR1	ENSG00000141027.22	ENST00000268712.8:ENST00000395851.5:ENST00000470782.5:ENST00000464381.5:ENST00000395849.6:ENST00000579573.2:ENST00000580554.1:ENST00000579606.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	57	2	2.2708	2.500365	2.72993	0.0188736	0.00646593	0.108861	0.073179
chr12	122139635	122139734	5240494	0	+	0.515152	(0.476,0.515]	chr12	497560	3	INTRON	INTRON	MLXIP	ENSG00000175727.14	ENST00000319080.12:ENST00000538698.5:ENST00000542417.1	protein_coding	protein_coding	protein_coding	protein_coding	7	77	2	1.50655	2.50033	3.49411	0.0316424	9.23453e-4	0.13151	0.0278392
chr1	171584741	171584841	254240	0	+	0.38	(0.378,0.408]	chr1	30257	2	SS5_PROX	SS5_PROX:INTRON	PRRC2C	ENSG00000117523.18	ENST00000647382.2:ENST00000367742.7:ENST00000338920.8:ENST00000426496.6:ENST00000495585.1:ENST00000644916.1	protein_coding	protein_coding	protein_coding	protein_coding	4	63	2	2.43657	2.500325	2.56408	0.0106733	0.00566993	0.0861859	0.0678837
chr6	161005743	161005842	3024630	0	+	0.383838	(0.378,0.408]	chr6	282304	133	INTRON	INTRON	MAP3K4	ENSG00000085511.20	ENST00000366919.6:ENST00000392142.9:ENST00000542952.5:ENST00000366920.6:ENST00000348824.11:ENST00000544041.5:ENST00000490904.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	63	2	2.43657	2.500325	2.56408	0.0106733	0.00566993	0.0861859	0.0678837
chr6	147783337	147783437	2991832	0	+	0.43	(0.408,0.44]	chr6	280177	459	INTRON	INTRON	ENSG00000227681	ENSG00000227681.5	ENST00000427015.1	lncRNA	lncRNA	lncRNA	lncRNA	6	84	2	1.94531	2.5003200000000003	3.05533	0.0136489	6.50769e-4	0.0949306	0.0231135
chr10	101789999	101790098	4680675	0	-	0.333333	(0.32,0.35]	chr10	431944	21	INTRON	INTRON	OGA	ENSG00000198408.14	ENST00000439817.5:ENST00000361464.8:ENST00000357797.9:ENST00000482611.5:ENST00000494347.5:ENST00000479811.5:ENST00000461645.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	159	2	1.64889	2.50031	3.35173	0.00719657	3.15473e-4	0.0756137	0.0163709
chr16	29518979	29519079	6470755	0	-	0.39	(0.378,0.408]	chr16	625147	131	INTRON	INTRON	ENSG00000288632	ENSG00000288632.1	ENST00000675579.1	lncRNA	lncRNA	lncRNA	lncRNA	4	56	2	1.94559	2.500305	3.05502	0.0211434	0.00689519	0.122929	0.0717484
chr15	92932660	92932759	6104021	0	+	0.40404	(0.378,0.408]	chr15	581428	32	INTRON	INTRON	ENSG00000279765:CHD2	ENSG00000279765.3:ENSG00000173575.22	ENST00000630790.1:ENST00000626874.2:ENST00000394196.9:ENST00000635856.1:ENST00000420239.7:ENST00000628375.2:ENST00000625990.3:ENST00000626782.2:ENST00000629136.1:ENST00000637572.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	78	2	1.64059	2.500285	3.35998	0.0181131	0.00230615	0.114853	0.0428247
chr11	66066292	66066389	4807832	0	+	0.42268	(0.408,0.44]	chr11	447316	18	EXON_MRNA	EXON_MRNA:INTRON	SF3B2	ENSG00000087365.16	ENST00000528302.5:ENST00000322535.11:ENST00000530981.1:ENST00000534765.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	55	2	1.74108	2.50028	3.25948	0.0424099	0.00246454	0.148082	0.0459102
chr3	10145813	10145913	1363154	0	+	0.41	(0.408,0.44]	chr3	143671	24	INTRON	INTRON	VHL	ENSG00000134086.9	ENST00000696153.1:ENST00000256474.3:ENST00000696142.1:ENST00000345392.2:ENST00000696143.1:ENST00000477538.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	93	2	2.17577	2.50019	2.82461	0.00269594	0.00241819	0.0479115	0.0442901
chr16	90158055	90158155	6424457	0	+	0.47	(0.44,0.476]	chr16	617211	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	FAM157C	ENSG00000260528.6	ENST00000568070.1:ENST00000570230.1	lncRNA	lncRNA	lncRNA	lncRNA	8	113	2	2.26491	2.5001800000000003	2.73545	0.00227712	7.908e-4	0.0426265	0.0258324
chr1	108748080	108748180	178256	0	+	0.29	(0.28,0.32]	chr1	19373	9	INTRON	INTRON	STXBP3	ENSG00000116266.11	ENST00000370008.4:ENST00000483586.5:ENST00000469338.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	42	2	2.2609	2.500175	2.73945	0.0671429	0.017681	0.183051	0.11319
chr1	113945453	113945553	191958	0	+	0.31	(0.28,0.32]	chr1	21149	36	INTRON	INTRON	HIPK1	ENSG00000163349.22	ENST00000426820.7:ENST00000626993.2:ENST00000369559.8:ENST00000369558.5:ENST00000369561.8:ENST00000369555.6	protein_coding	protein_coding	protein_coding	protein_coding	2	42	2	2.2609	2.500175	2.73945	0.0671429	0.017681	0.183051	0.11319
chr12	45245368	45245468	5120307	0	+	0.3	(0.28,0.32]	chr12	483127	167	INTRON	INTRON	ANO6	ENSG00000177119.17	ENST00000426898.2:ENST00000425752.6:ENST00000423947.7:ENST00000320560.13:ENST00000680498.1:ENST00000550630.5:ENST00000680201.1:ENST00000681156.1:ENST00000679761.1:ENST00000680371.1:ENST00000681817.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	42	2	2.2609	2.500175	2.73945	0.0671429	0.017681	0.183051	0.11319
chr15	28613958	28614057	5988156	0	+	0.292929	(0.28,0.32]	chr15	569260	14	INTRON	INTRON	HERC2P9	ENSG00000206149.11	ENST00000689985.1:ENST00000688694.1:ENST00000529537.2:ENST00000529624.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	2	42	2	2.2609	2.500175	2.73945	0.0671429	0.017681	0.183051	0.11319
chr2	26124551	26124650	714007	0	+	0.282828	(0.28,0.32]	chr2	82453	143	INTRON	INTRON	RAB10	ENSG00000084733.11	ENST00000264710.5:ENST00000495146.5:ENST00000473035.1:ENST00000462003.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	42	2	2.2609	2.500175	2.73945	0.0671429	0.017681	0.183051	0.11319
chrX	73980351	73980451	7682462	0	+	0.31	(0.28,0.32]	chrX	786638	120	INTRON	INTRON	JPX	ENSG00000225470.8	ENST00000664637.1:ENST00000639185.1:ENST00000655090.1:ENST00000640437.1:ENST00000660546.1:ENST00000667886.1:ENST00000660840.1:ENST00000657179.1:ENST00000670506.1:ENST00000657910.1:ENST00000662120.1:ENST00000671207.1:ENST00000659254.1:ENST00000656624.1:ENST00000667573.1:ENST00000660856.1:ENST00000660836.1:ENST00000668590.1:ENST00000658649.1:ENST00000414209.6:ENST00000654137.1:ENST00000670994.1:ENST00000602772.5:ENST00000655879.1:ENST00000657372.1:ENST00000657096.1:ENST00000602985.6:ENST00000670685.1:ENST00000670503.1:ENST00000663027.1:ENST00000654995.1:ENST00000602895.6:ENST00000654374.1:ENST00000660087.1:ENST00000665032.1:ENST00000671336.1:ENST00000671476.1:ENST00000667057.1:ENST00000670192.1:ENST00000670464.1:ENST00000665345.1:ENST00000661546.1:ENST00000662543.1:ENST00000602938.6:ENST00000664295.1:ENST00000654005.1:ENST00000669149.1:ENST00000659852.1:ENST00000656509.1:ENST00000602294.6:ENST00000667294.1:ENST00000663470.1:ENST00000602920.6:ENST00000671021.1:ENST00000659849.1:ENST00000667937.1:ENST00000661130.1:ENST00000654196.1:ENST00000655994.1:ENST00000659373.1:ENST00000662239.1:ENST00000670805.1:ENST00000656263.1:ENST00000653069.1:ENST00000657638.1:ENST00000653808.1:ENST00000653929.1:ENST00000653885.1:ENST00000659023.1:ENST00000602546.5:ENST00000659622.1:ENST00000671518.1:ENST00000670408.1	lncRNA	lncRNA	lncRNA	lncRNA	2	42	2	2.2609	2.500175	2.73945	0.0671429	0.017681	0.183051	0.11319
chr22	49652126	49652226	7602609	0	-	0.45	(0.44,0.476]	chr22	778594	247	INTRON	INTRON	MIR3667HG	ENSG00000188511.13	ENST00000414287.5:ENST00000416411.1:ENST00000689875.1:ENST00000400023.5:ENST00000405854.5	lncRNA	lncRNA	lncRNA	lncRNA	7	100	2	2.23425	2.50014	2.76603	0.00441123	6.78182e-4	0.0587529	0.0236375
chr16	70268795	70268895	6510279	0	-	0.44	(0.408,0.44]	chr16	630566	4	SS3_PROX	SS3_PROX:INTRON	AARS1	ENSG00000090861.17	ENST00000674963.1:ENST00000675643.1:ENST00000675917.1:ENST00000674691.1:ENST00000261772.13:ENST00000675569.1:ENST00000676209.1:ENST00000676211.1:ENST00000676040.1:ENST00000675953.1:ENST00000675691.1:ENST00000676004.1:ENST00000675270.1:ENST00000675403.1:ENST00000676212.1:ENST00000675045.1:ENST00000675035.1:ENST00000676168.1:ENST00000674652.1:ENST00000675133.1:ENST00000675120.1:ENST00000674811.1:ENST00000674512.1:ENST00000675853.1:ENST00000565361.3:ENST00000676247.1:ENST00000674848.1:ENST00000674962.1:ENST00000675371.1:ENST00000675986.1:ENST00000674768.1:ENST00000675297.1:ENST00000675751.1:ENST00000564359.6:ENST00000675338.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	69	2	1.66945	2.50006	3.33067	0.0218479	0.0024459	0.123836	0.0445752
chr12	49006281	49006381	5320206	0	-	0.52	(0.515,0.57]	chr12	506658	4	SS3_PROX	SS3_PROX:INTRON	PRKAG1	ENSG00000181929.13	ENST00000548065.7:ENST00000316299.9:ENST00000547306.5:ENST00000546531.5:ENST00000552212.5:ENST00000551696.5:ENST00000550125.5:ENST00000548950.5:ENST00000549726.5:ENST00000551121.5:ENST00000550448.5:ENST00000552463.5:ENST00000548857.5:ENST00000548605.5:ENST00000547082.1:ENST00000547125.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	60	2	1.52049	2.50004	3.47959	0.0366813	8.38022e-4	0.138959	0.0263691
chr1	100039903	100040002	171621	0	+	0.313131	(0.28,0.32]	chr1	18589	12	INTRON	INTRON	ENSG00000283761:MFSD14A	ENSG00000283761.1:ENSG00000156875.14	ENST00000638792.1:ENST00000638968.1:ENST00000639040.1:ENST00000639037.1:ENST00000638779.1:ENST00000639171.1:ENST00000640238.1:ENST00000640357.1:ENST00000370152.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	42	2	2.39347	2.5000150000000003	2.60656	0.0504457	0.0256827	0.156383	0.133676
chr2	237998590	237998690	1050865	0	+	0.32	(0.28,0.32]	chr2	111745	34	INTRON	INTRON	UBE2F	ENSG00000184182.19	ENST00000440223.5:ENST00000441728.6:ENST00000414443.5:ENST00000272930.9:ENST00000409633.5:ENST00000416292.5:ENST00000448502.5:ENST00000433568.5:ENST00000455999.5:ENST00000417231.5:ENST00000445676.5:ENST00000439338.5:ENST00000439780.5:ENST00000454786.5:ENST00000433241.5:ENST00000409953.5:ENST00000409332.5:ENST00000612130.4:ENST00000434655.5:ENST00000434137.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	42	2	2.39347	2.5000150000000003	2.60656	0.0504457	0.0256827	0.156383	0.133676
chr4	102802196	102802287	2213097	0	-	0.307692	(0.28,0.32]	chr4	216738	8	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	UBE2D3	ENSG00000109332.20	ENST00000453744.7:ENST00000394804.6:ENST00000618836.4:ENST00000394803.9:ENST00000394801.8:ENST00000343106.9:ENST00000508474.5:ENST00000503742.5:ENST00000321805.11:ENST00000350435.11:ENST00000338145.7:ENST00000349311.12:ENST00000504211.5:ENST00000505009.5:ENST00000357194.10:ENST00000505207.5:ENST00000507845.5:ENST00000502404.5:ENST00000508635.5:ENST00000505307.5:ENST00000510129.5:ENST00000508476.5:ENST00000502563.5:ENST00000508238.5:ENST00000514755.5:ENST00000508974.5:ENST00000502690.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	42	2	2.39347	2.5000150000000003	2.60656	0.0504457	0.0256827	0.156383	0.133676
chr5	134210812	134210912	2726539	0	-	0.31	(0.28,0.32]	chr5	256558	43	INTRON	INTRON	PPP2CA	ENSG00000113575.10	ENST00000481195.6:ENST00000522385.1:ENST00000523082.1:ENST00000231504.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	42	2	2.39347	2.5000150000000003	2.60656	0.0504457	0.0256827	0.156383	0.133676
chr16	21496789	21496889	6461321	0	-	0.5	(0.476,0.515]	chr16	623371	88	INTRON	INTRON	SMG1P3	ENSG00000180747.15	ENST00000522480.5:ENST00000522841.6:ENST00000437413.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	3	46	2	2.26789	2.4999700000000002	2.73205	0.0176567	0.0159328	0.109464	0.105233
chr3	28287213	28287312	1391004	0	+	0.363636	(0.35,0.378]	chr3	145643	235	INTRON	INTRON	CMC1	ENSG00000187118.14	ENST00000477739.1:ENST00000423894.5:ENST00000466830.6:ENST00000334841.10:ENST00000418849.2:ENST00000396610.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	76	2	1.91549	2.4999	3.08431	0.00887698	0.0065853	0.0849778	0.0701901
chr1	32684918	32685018	66186	0	+	0.38	(0.378,0.408]	chr1	8474	45	UTR3	UTR3:EXON_MRNA	RBBP4	ENSG00000162521.19	ENST00000373493.10	protein_coding	protein_coding	protein_coding	protein_coding	4	57	2	1.72045	2.499835	3.27922	0.0424671	0.00312717	0.161763	0.0499153
chr5	88211674	88211774	2669163	0	-	0.51	(0.476,0.515]	chr5	252658	41	INTRON	INTRON	TMEM161B	ENSG00000164180.14	ENST00000514135.5:ENST00000296595.11:ENST00000511087.5:ENST00000510089.5:ENST00000506536.5:ENST00000511218.5:ENST00000512429.5:ENST00000507872.1:ENST00000509387.5:ENST00000503755.5:ENST00000513487.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	61	2	2.37731	2.499835	2.62236	0.0111793	0.00517	0.0937192	0.0631506
chr17	42581012	42581112	6773357	0	-	0.32	(0.28,0.32]	chr17	667167	16	UTR3	UTR3:EXON_MRNA	RETREG3	ENSG00000141699.11	ENST00000589797.5:ENST00000309428.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	77	2	2.40458	2.49981	2.59504	0.0141047	0.00582473	0.0959618	0.0687439
chr7	128538628	128538728	3407430	0	+	0.44	(0.408,0.44]	chr7	318333	45	INTRON	INTRON	ENSG00000280828	ENSG00000280828.1	ENST00000479267.2	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	21	293	2	2.20395	2.4997749999999996	2.7956	6.53484e-4	5.92166e-6	0.0233335	0.00170648
chr9	15463190	15463290	4104796	0	+	0.4	(0.378,0.408]	chr9	373881	2	SS5_PROX	SS5_PROX:INTRON	SNAPC3	ENSG00000164975.16	ENST00000467062.5:ENST00000610884.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	48	2	2.21238	2.499715	2.78705	0.0218124	0.0135539	0.11491	0.101363
chr13	106543704	106543801	5648686	0	-	0.360825	(0.35,0.378]	chr13	538141	22	UTR3	UTR3:EXON_MRNA	ARGLU1	ENSG00000134884.15	ENST00000400198.8:ENST00000472226.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	16	214	2	2.10285	2.49966	2.89647	5.43339e-4	2.42828e-4	0.0211605	0.0143498
chr3	37079375	37079474	1655644	0	-	0.353535	(0.35,0.378]	chr3	169908	39	INTRON	INTRON	LRRFIP2	ENSG00000093167.18	ENST00000336686.9:ENST00000354379.8:ENST00000421276.6:ENST00000396428.6:ENST00000440230.5:ENST00000440742.2:ENST00000416425.5	protein_coding	protein_coding	protein_coding	protein_coding	3	49	2	2.39583	2.49962	2.60341	0.0275785	0.0107976	0.123904	0.0920575
chr11	62829957	62830057	4961712	0	-	0.55	(0.515,0.57]	chr11	467012	2	SS5_PROX	SS5_PROX:INTRON	STX5	ENSG00000162236.13	ENST00000294179.8:ENST00000377897.8:ENST00000394690.5:ENST00000492066.5:ENST00000491231.5:ENST00000488303.5:ENST00000486437.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	29	2	2.34087	2.499605	2.65834	0.0469761	0.0187418	0.151917	0.117523
chr16	74977911	74978011	6527223	0	-	0.56	(0.515,0.57]	chr16	632160	117	INTRON	INTRON	WDR59	ENSG00000103091.15	ENST00000262144.11:ENST00000616369.4:ENST00000536050.5:ENST00000568323.5:ENST00000563111.2:ENST00000562331.5:ENST00000564859.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	29	2	2.34087	2.499605	2.65834	0.0469761	0.0187418	0.151917	0.117523
chr2	30238897	30238997	725962	0	+	0.53	(0.515,0.57]	chr2	83940	40	INTRON	INTRON	LBH	ENSG00000213626.13	ENST00000395323.9:ENST00000412933.5:ENST00000404397.5:ENST00000406087.5:ENST00000464412.5:ENST00000401506.1:ENST00000467242.1:ENST00000407930.2:ENST00000484150.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	29	2	2.34087	2.499605	2.65834	0.0469761	0.0187418	0.151917	0.117523
chr6	107029448	107029524	2931534	0	+	0.539474	(0.515,0.57]	chr6	276187	3	INTRON	INTRON	MTRES1	ENSG00000130349.10	ENST00000311381.8:ENST00000405204.6:ENST00000625458.1	protein_coding	protein_coding	protein_coding	protein_coding	2	29	2	2.34087	2.499605	2.65834	0.0469761	0.0187418	0.151917	0.117523
chrX	47203896	47203996	7655680	0	+	0.55	(0.515,0.57]	chrX	783250	2	SS5_PROX	SS5_PROX:INTRON	UBA1	ENSG00000130985.17	ENST00000377351.8:ENST00000335972.11:ENST00000490869.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	29	2	2.34087	2.499605	2.65834	0.0469761	0.0187418	0.151917	0.117523
chr11	125611519	125611619	4882823	0	+	0.43	(0.408,0.44]	chr11	456498	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	STT3A	ENSG00000134910.14	ENST00000529196.5:ENST00000392708.9:ENST00000649491.1:ENST00000531491.5:ENST00000526726.1:ENST00000524639.5:ENST00000531599.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	73	2	2.46587	2.4995	2.53313	0.00739595	0.00280622	0.074277	0.0488779
chr14	58325388	58325486	5731469	0	+	0.489796	(0.476,0.515]	chr14	544180	14	INTRON	INTRON	ARID4A	ENSG00000032219.19	ENST00000348476.7:ENST00000355431.8:ENST00000395168.7:ENST00000445108.5:ENST00000431317.6	protein_coding	protein_coding	protein_coding	protein_coding	4	60	2	2.365	2.49948	2.63396	0.0128901	0.00426634	0.0926667	0.0596808
chr16	30727411	30727507	6338954	0	+	0.541667	(0.515,0.57]	chr16	607822	13	INTRON	INTRON	SRCAP	ENSG00000080603.17	ENST00000262518.9:ENST00000395059.6	protein_coding	protein_coding	protein_coding	protein_coding	2	29	2	2.43589	2.4994750000000003	2.56306	0.0370871	0.0247751	0.139194	0.131869
chr18	23459675	23459775	6883585	0	+	0.55	(0.515,0.57]	chr18	682165	58	INTRON	INTRON	RIOK3	ENSG00000101782.15	ENST00000339486.8:ENST00000581585.5:ENST00000584960.1:ENST00000584052.5:ENST00000581302.5:ENST00000577501.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	29	2	2.43589	2.4994750000000003	2.56306	0.0370871	0.0247751	0.139194	0.131869
chr19	2186129	2186229	6996392	0	+	0.56	(0.515,0.57]	chr19	693428	2	SS5_PROX	SS5_PROX:INTRON	DOT1L	ENSG00000104885.19	ENST00000398665.8:ENST00000686010.1:ENST00000452696.5:ENST00000478937.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	29	2	2.43589	2.4994750000000003	2.56306	0.0370871	0.0247751	0.139194	0.131869
chr2	99412038	99412134	1189077	0	-	0.541667	(0.515,0.57]	chr2	127624	8	INTRON	INTRON	REV1	ENSG00000135945.10	ENST00000393445.7:ENST00000258428.8:ENST00000413697.5:ENST00000482595.5:ENST00000465835.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	29	2	2.43589	2.4994750000000003	2.56306	0.0370871	0.0247751	0.139194	0.131869
chr7	101950100	101950200	3367694	0	+	0.53	(0.515,0.57]	chr7	315229	171	INTRON	INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000497815.5:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000558469.5:ENST00000560541.5:ENST00000558836.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	29	2	2.43589	2.4994750000000003	2.56306	0.0370871	0.0247751	0.139194	0.131869
chr7	105330664	105330763	3603323	0	-	0.525253	(0.515,0.57]	chr7	336161	237	INTRON	INTRON	SRPK2	ENSG00000135250.17	ENST00000393651.8:ENST00000482897.5:ENST00000460391.5:ENST00000462282.5:ENST00000465112.5:ENST00000482862.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	29	2	2.43589	2.4994750000000003	2.56306	0.0370871	0.0247751	0.139194	0.131869
chr3	182949331	182949431	1879618	0	-	0.38	(0.378,0.408]	chr3	187800	13	INTRON	INTRON	DCUN1D1	ENSG00000043093.15	ENST00000292782.9:ENST00000632685.1:ENST00000460412.6:ENST00000469954.5:ENST00000492563.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	48	2	1.89621	2.499475	3.10274	0.0488044	0.00586642	0.173377	0.0668095
chr1	100285919	100286016	172472	0	+	0.43299	(0.408,0.44]	chr1	18768	2	INTRON	INTRON	RTCA	ENSG00000137996.13	ENST00000370128.9:ENST00000260563.4	protein_coding	protein_coding	protein_coding	protein_coding	7	95	2	2.38723	2.499465	2.6117	0.00555224	9.47391e-4	0.0648867	0.0282007
chr22	22551589	22551678	7562387	0	-	0.314607	(0.28,0.32]	chr22	773608	1	INTRON	INTRON	PRAME	ENSG00000185686.18	ENST00000492657.5:ENST00000398743.6:ENST00000405655.8:ENST00000543184.5:ENST00000398741.5:ENST00000402697.5:ENST00000439106.5:ENST00000438888.5:ENST00000420709.5:ENST00000476336.5:ENST00000485532.1:ENST00000406503.1:ENST00000442481.5:ENST00000403441.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	148	2	1.71643	2.49946	3.28249	0.00963226	5.32738e-4	0.086971	0.0213425
chr11	28071016	28071115	4938066	0	-	0.434343	(0.408,0.44]	chr11	462472	12	INTRON	INTRON	KIF18A	ENSG00000121621.7	ENST00000263181.7	protein_coding	protein_coding	protein_coding	protein_coding	5	73	2	2.3494	2.4994199999999998	2.64944	0.00481947	0.00462504	0.062717	0.060277
chr21	34075340	34075440	7401110	0	+	0.32	(0.28,0.32]	chr21	753967	12	INTRON	INTRON	MRPS6:SLC5A3	ENSG00000243927.6:ENSG00000198743.7	ENST00000488492.5:ENST00000477091.5:ENST00000399312.3:ENST00000381151.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	163	2	2.46421	2.4994199999999998	2.53463	0.00248809	6.24568e-4	0.0446195	0.0224805
chr11	86008278	86008376	5014223	0	-	0.479592	(0.476,0.515]	chr11	472976	3	INTRON	INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000630913.2:ENST00000528398.5:ENST00000356360.9:ENST00000534412.5:ENST00000531771.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	45	2	1.86492	2.499405	3.13389	0.0550347	0.00405473	0.165463	0.0578376
chr7	137879575	137879675	3654503	0	-	0.49	(0.476,0.515]	chr7	339295	47	UTR3	UTR3:EXON_MRNA	CREB3L2	ENSG00000182158.16	ENST00000330387.11	protein_coding	protein_coding	protein_coding	protein_coding	3	45	2	1.86492	2.499405	3.13389	0.0550347	0.00405473	0.165463	0.0578376
chr6	122482482	122482580	2947775	0	+	0.295918	(0.28,0.32]	chr6	277519	47	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	PKIB:ENSG00000279114	ENSG00000135549.16:ENSG00000279114.1	ENST00000615438.4:ENST00000624363.1:ENST00000392491.6:ENST00000607474.5:ENST00000608895.5:ENST00000618977.4:ENST00000583007.2	protein_coding	protein_coding	protein_coding:TEC	protein_coding:TEC:processed_transcript	3	59	2	1.83771	2.4993600000000002	3.16101	0.0591725	0.0061861	0.189982	0.0677395
chr11	86001458	86001558	5014151	0	-	0.43	(0.408,0.44]	chr11	472963	3	SS3_PROX	SS3_PROX:INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000630913.2:ENST00000528398.5:ENST00000356360.9:ENST00000534412.5:ENST00000533350.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	95	2	1.62689	2.499255	3.37162	0.00962857	0.00208674	0.086971	0.0411801
chr1	12318837	12318916	29147	0	+	0.379747	(0.378,0.408]	chr1	3546	1	INTRON	INTRON	VPS13D	ENSG00000048707.15	ENST00000620676.6:ENST00000613099.4:ENST00000011700.10:ENST00000646917.1:ENST00000460333.5:ENST00000487188.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	47	2	2.46345	2.49924	2.53503	0.0319942	0.00827342	0.13174	0.0813266
chr1	160248621	160248721	571472	0	-	0.49	(0.476,0.515]	chr1	69176	42	INTRON	INTRON	DCAF8	ENSG00000132716.19	ENST00000326837.6:ENST00000368073.7:ENST00000368074.6:ENST00000461888.5:ENST00000475733.5:ENST00000610139.5:ENST00000447377.5:ENST00000495887.1:ENST00000440682.5:ENST00000407642.6:ENST00000419626.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	45	2	2.05154	2.49923	2.94692	0.0336015	0.00794331	0.134145	0.0797304
chr8	127924660	127924759	3861361	0	+	0.515152	(0.476,0.515]	chr8	355450	76	INTRON	INTRON	PVT1	ENSG00000249859.13	ENST00000667305.1:ENST00000690350.1:ENST00000653522.1:ENST00000664214.1:ENST00000664139.1:ENST00000661830.1:ENST00000657289.1:ENST00000504719.7:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000656880.1:ENST00000660200.1:ENST00000669132.1:ENST00000657211.1:ENST00000653845.1:ENST00000517525.2:ENST00000665856.1:ENST00000651587.1:ENST00000692980.1:ENST00000666353.1:ENST00000657183.1:ENST00000654324.1:ENST00000658556.1:ENST00000657693.1:ENST00000666080.1:ENST00000667539.1:ENST00000521951.1:ENST00000524165.6:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000664293.1:ENST00000657297.1:ENST00000662410.1:ENST00000670795.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000654091.1:ENST00000523328.6:ENST00000657356.1:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000662061.1:ENST00000667204.1:ENST00000656491.1:ENST00000667714.1:ENST00000654105.1:ENST00000665721.1:ENST00000518528.2:ENST00000669416.1:ENST00000660438.1:ENST00000661160.1:ENST00000659326.1:ENST00000665246.1:ENST00000657384.1:ENST00000666842.1:ENST00000517790.2:ENST00000522963.6:ENST00000654369.1:ENST00000661625.1:ENST00000657596.1:ENST00000664995.1:ENST00000656532.1:ENST00000661988.1:ENST00000670714.1:ENST00000669951.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000656693.1:ENST00000668123.1:ENST00000666776.1:ENST00000664299.1:ENST00000669272.1:ENST00000659912.1:ENST00000670532.1:ENST00000660896.1:ENST00000667149.1:ENST00000656396.1:ENST00000523068.2:ENST00000521122.2:ENST00000520913.2:ENST00000519481.6:ENST00000651568.1:ENST00000669082.1:ENST00000665166.1:ENST00000656948.1:ENST00000671088.1:ENST00000664924.1:ENST00000670204.1:ENST00000652695.1:ENST00000670602.1:ENST00000651664.1:ENST00000517838.6:ENST00000663461.1:ENST00000513868.6:ENST00000670626.1:ENST00000653406.1:ENST00000658242.1:ENST00000669407.1	lncRNA	lncRNA	lncRNA	lncRNA	3	45	2	2.05154	2.49923	2.94692	0.0336015	0.00794331	0.134145	0.0797304
chr4	150972333	150972433	2271342	0	-	0.22	[0,0.28]	chr4	220921	429	INTRON	INTRON	LRBA	ENSG00000198589.14	ENST00000357115.9:ENST00000651943.2:ENST00000510413.5:ENST00000651035.1:ENST00000507224.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	78	2	2.09841	2.4991149999999998	2.89982	0.0158893	0.0151026	0.108435	0.101453
chr1	96793624	96793723	168671	0	+	0.373737	(0.35,0.378]	chr1	18249	80	INTRON	INTRON	PTBP2	ENSG00000117569.19	ENST00000482253.5:ENST00000675735.1:ENST00000609116.5:ENST00000674951.1:ENST00000675080.1:ENST00000426398.3:ENST00000370197.5:ENST00000370198.5:ENST00000476419.5:ENST00000676292.1:ENST00000676096.1:ENST00000675365.1:ENST00000674579.1:ENST00000675401.1:ENST00000459735.5:ENST00000476783.5:ENST00000492905.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	66	2	2.4077	2.49908	2.59046	0.0122026	0.00528327	0.0910127	0.0656295
chrX	40075680	40075771	7804628	0	-	0.582418	(0.57,1]	chrX	795785	1	INTRON	INTRON	BCOR	ENSG00000183337.18	ENST00000413905.6:ENST00000378455.8:ENST00000397354.7:ENST00000342274.8:ENST00000615339.2:ENST00000680831.1:ENST00000378444.9:ENST00000679513.1:ENST00000672922.2:ENST00000442018.6:ENST00000673391.1:ENST00000427012.3:ENST00000406200.4:ENST00000490976.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	40	2	1.89351	2.49897	3.10443	0.0255126	3.67483e-4	0.133676	0.017788000000000002
chr3	45676621	45676721	1416935	0	+	0.36	(0.35,0.378]	chr3	148642	3	SS3_PROX	SS3_PROX:INTRON	LIMD1	ENSG00000144791.10	ENST00000273317.5	protein_coding	protein_coding	protein_coding	protein_coding	13	194	2	2.43707	2.498965	2.56086	6.78405e-4	2.09302e-4	0.023827	0.0126312
chr7	43653273	43653372	3525611	0	-	0.40404	(0.378,0.408]	chr7	328755	22	INTRON	INTRON	COA1	ENSG00000106603.20	ENST00000415076.6:ENST00000446330.6:ENST00000446564.5:ENST00000438444.5:ENST00000223336.11:ENST00000310564.10:ENST00000415798.5:ENST00000431651.5:ENST00000451651.5:ENST00000418140.5:ENST00000448704.5:ENST00000470156.1:ENST00000457939.1:ENST00000420441.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	10	138	2	1.83778	2.49895	3.16012	0.00609624	1.44288e-4	0.0706177	0.0109794
chr5	134920360	134920460	2491866	0	+	0.35	(0.32,0.35]	chr5	238088	95	INTRON	INTRON	PCBD2	ENSG00000132570.15	ENST00000512783.5:ENST00000254908.11:ENST00000504352.1:ENST00000510013.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	64	2	1.81388	2.4989	3.18392	0.0371014	0.00379806	0.139201	0.0562562
chr10	87878058	87878158	4483071	0	+	0.46	(0.44,0.476]	chr10	412544	4	SS3_PROX	SS3_PROX:INTRON	PTEN	ENSG00000171862.12	ENST00000688308.1:ENST00000693560.1:ENST00000371953.8:ENST00000688158.1:ENST00000686459.1:ENST00000462694.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	84	2	2.09333	2.498865	2.9044	0.00776307	0.00132926	0.0757646	0.0335085
chr12	67288134	67288234	5160688	0	+	0.45	(0.44,0.476]	chr12	488472	57	INTRON	INTRON	CAND1	ENSG00000111530.13	ENST00000545606.6:ENST00000539434.1:ENST00000540525.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	84	2	2.09333	2.498865	2.9044	0.00776307	0.00132926	0.0757646	0.0335085
chr17	41983927	41984024	6770519	0	-	0.350515	(0.35,0.378]	chr17	666611	4	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	DNAJC7	ENSG00000168259.17	ENST00000316603.12:ENST00000457167.9:ENST00000586335.2:ENST00000674306.1:ENST00000426588.7:ENST00000674355.1:ENST00000674504.1:ENST00000590197.2:ENST00000674472.1:ENST00000674233.1:ENST00000674166.1:ENST00000674179.1:ENST00000674481.1:ENST00000674249.1:ENST00000585866.6:ENST00000589576.6:ENST00000674214.1:ENST00000588814.5:ENST00000590774.6:ENST00000674303.1:ENST00000674453.1:ENST00000674252.1:ENST00000674287.1:ENST00000674497.1:ENST00000674411.1:ENST00000585693.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	64	2	2.39939	2.49883	2.59827	0.0458078	0.0016492	0.149888	0.0375159
chr1	32846703	32846801	66864	0	+	0.326531	(0.32,0.35]	chr1	8573	37	INTRON	INTRON	S100PBP	ENSG00000116497.18	ENST00000373476.5:ENST00000373475.10	protein_coding	protein_coding	protein_coding	protein_coding	2	39	2	2.48693	2.49877	2.51061	0.0364463	0.0338094	0.146709	0.138959
chr2	32192035	32192135	730045	0	+	0.35	(0.32,0.35]	chr2	84181	3	SS3_PROX	SS3_PROX:INTRON	SLC30A6	ENSG00000152683.14	ENST00000357055.7:ENST00000435660.5:ENST00000282587.9:ENST00000449777.5:ENST00000454324.5:ENST00000379343.6:ENST00000440718.5:ENST00000406369.2:ENST00000457724.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	39	2	2.48693	2.49877	2.51061	0.0364463	0.0338094	0.146709	0.138959
chr20	1385369	1385469	7305298	0	-	0.35	(0.32,0.35]	chr20	743696	73	INTRON	INTRON	FKBP1A	ENSG00000088832.18	ENST00000677937.1:ENST00000439640.5:ENST00000618612.5:ENST00000400137.9:ENST00000678136.1:ENST00000677335.1:ENST00000381719.8:ENST00000678408.1:ENST00000381724.8:ENST00000381715.4:ENST00000678325.1:ENST00000612074.5:ENST00000677078.1:ENST00000677533.1:ENST00000679195.1:ENST00000614856.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	39	2	2.48693	2.49877	2.51061	0.0364463	0.0338094	0.146709	0.138959
chr7	111416193	111416293	3622648	0	-	0.35	(0.32,0.35]	chr7	337108	234	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000452895.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding	2	39	2	2.48693	2.49877	2.51061	0.0364463	0.0338094	0.146709	0.138959
chr13	25307325	25307418	5457222	0	+	0.505376	(0.476,0.515]	chr13	522873	2	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	NUP58	ENSG00000139496.17	ENST00000481980.2:ENST00000490231.6:ENST00000695571.1:ENST00000477876.2:ENST00000695572.1:ENST00000463407.6:ENST00000695573.1:ENST00000381736.8:ENST00000695583.1:ENST00000465068.5:ENST00000460326.5:ENST00000480187.5:ENST00000466694.6:ENST00000381718.8:ENST00000695575.1:ENST00000695574.1:ENST00000495460.2:ENST00000381747.7:ENST00000695576.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	60	2	2.31726	2.498745	2.68023	0.015077	0.00353671	0.0994339	0.0546236
chr4	1937054	1937154	1911240	0	+	0.48	(0.476,0.515]	chr4	191777	14	INTRON	INTRON	NSD2	ENSG00000109685.19	ENST00000508803.6:ENST00000514045.5:ENST00000398261.6:ENST00000382891.9:ENST00000353275.9:ENST00000382892.6:ENST00000382895.7:ENST00000312087.10:ENST00000420906.6:ENST00000503128.5:ENST00000677559.1:ENST00000512700.2:ENST00000678714.1:ENST00000511904.1:ENST00000513726.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	10	130	2	1.71811	2.498735	3.27936	0.0116533	3.89817e-5	0.0890315	0.00504677
chrX	24076124	24076221	7630957	0	+	0.28866000000000003	(0.28,0.32]	chrX	781493	24	INTRON	INTRON	EIF2S3	ENSG00000130741.11	ENST00000253039.9:ENST00000457332.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	27	462	2	2.26901	2.4987000000000004	2.72839	1.53018e-4	8.83397e-5	0.0106628	0.00842626
chr10	91815950	91816047	4488205	0	+	0.536082	(0.515,0.57]	chr10	413147	24	INTRON	INTRON	TNKS2	ENSG00000107854.6	ENST00000371627.5	protein_coding	protein_coding	protein_coding	protein_coding	3	39	2	1.8707	2.498665	3.12663	0.0523213	0.00374498	0.160182	0.0562234
chr22	38354298	38354398	7587389	0	-	0.52	(0.515,0.57]	chr22	776655	29	INTRON	INTRON	TPTEP2	ENSG00000244627.5	ENST00000428294.5:ENST00000407491.6:ENST00000443042.5:ENST00000457665.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	3	39	2	1.8707	2.498665	3.12663	0.0523213	0.00374498	0.160182	0.0562234
chr3	197152582	197152682	1902043	0	-	0.53	(0.515,0.57]	chr3	190624	24	INTRON	INTRON	DLG1	ENSG00000075711.21	ENST00000667157.1:ENST00000346964.6:ENST00000656428.1:ENST00000663148.1:ENST00000655488.1:ENST00000357674.9:ENST00000671185.1:ENST00000658701.1:ENST00000667104.1:ENST00000661336.1:ENST00000669565.1:ENST00000670455.1:ENST00000656087.1:ENST00000670366.1:ENST00000653583.1:ENST00000653795.1:ENST00000671246.1:ENST00000661453.1:ENST00000665728.1:ENST00000664564.1:ENST00000653331.1:ENST00000660432.1:ENST00000660898.1:ENST00000657381.1:ENST00000659221.1:ENST00000654737.1:ENST00000669332.1:ENST00000659716.1:ENST00000660553.1:ENST00000664991.1:ENST00000419354.5:ENST00000661440.1:ENST00000667971.1:ENST00000670935.1:ENST00000668578.1:ENST00000666007.1:ENST00000661229.1:ENST00000660237.1:ENST00000657098.1:ENST00000661013.1:ENST00000436682.6:ENST00000452595.5:ENST00000662727.1:ENST00000422288.6:ENST00000448528.6:ENST00000443183.5:ENST00000656944.1:ENST00000392382.6:ENST00000450955.5:ENST00000658155.1:ENST00000669714.1:ENST00000654733.1:ENST00000469073.2:ENST00000419227.5:ENST00000392381.7:ENST00000471733.5:ENST00000419553.6:ENST00000447466.1:ENST00000661808.1:ENST00000453607.5:ENST00000456699.6:ENST00000392380.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	39	2	1.8707	2.498665	3.12663	0.0523213	0.00374498	0.160182	0.0562234
chr3	33811877	33811971	1394515	0	+	0.255319	[0,0.28]	chr3	146030	3	SS3_PROX	SS3_PROX:INTRON	PDCD6IP	ENSG00000170248.15	ENST00000457054.6:ENST00000648706.1:ENST00000435909.5:ENST00000430877.5:ENST00000413073.1:ENST00000307296.8:ENST00000477798.5:ENST00000498147.5:ENST00000484478.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	106	2	2.48142	2.49863	2.51584	0.0115397	0.00375221	0.0889104	0.0562562
chr16	10463820	10463920	6287066	0	+	0.45	(0.44,0.476]	chr16	602017	59	INTRON	INTRON	ATF7IP2	ENSG00000166669.14	ENST00000396559.5:ENST00000396560.6:ENST00000543967.5:ENST00000562102.6:ENST00000535850.5:ENST00000568027.5:ENST00000324570.9:ENST00000356427.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	45	2	2.0776	2.49855	2.9195	0.0292951	0.0102021	0.141862	0.0850389
chr2	173934069	173934169	1268757	0	-	0.46	(0.44,0.476]	chr2	134208	3	SS5_PROX	SS5_PROX:INTRON	SP3	ENSG00000172845.18	ENST00000650743.1:ENST00000310015.12:ENST00000416195.1:ENST00000418194.7:ENST00000652005.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	45	2	2.0776	2.49855	2.9195	0.0292951	0.0102021	0.141862	0.0850389
chr3	50089637	50089718	1424487	0	+	0.45679	(0.44,0.476]	chr3	150097	2	INTRON	INTRON	RBM6:RBM5	ENSG00000004534.15:ENSG00000003756.17	ENST00000434592.5:ENST00000347869.8:ENST00000404526.6:ENST00000469838.5:ENST00000433556.6:ENST00000441305.5:ENST00000438369.5:ENST00000464087.6:ENST00000492472.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	45	2	2.0776	2.49855	2.9195	0.0292951	0.0102021	0.141862	0.0850389
chr16	47603630	47603730	6344741	0	+	0.54	(0.515,0.57]	chr16	608939	57	INTRON	INTRON	PHKB	ENSG00000102893.17	ENST00000566044.5:ENST00000299167.12:ENST00000696809.1:ENST00000323584.10:ENST00000568439.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	111	2	1.99393	2.49844	3.00295	0.00258891	2.06595e-4	0.0469725	0.0131276
chr1	1481136	1481236	1663	0	+	0.52	(0.515,0.57]	chr1	384	2	SS5_PROX	SS5_PROX:INTRON	ATAD3B	ENSG00000160072.20	ENST00000673477.1:ENST00000308647.8:ENST00000472194.6:ENST00000378736.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	39	2	2.08547	2.4984349999999997	2.9114	0.0289426	0.00826019	0.1274	0.0813266
chr1	22057399	22057499	42248	0	+	0.55	(0.515,0.57]	chr1	5072	12	INTRON	INTRON	ENSG00000289694:CDC42	ENSG00000289694.1:ENSG00000070831.18	ENST00000695855.1:ENST00000695856.1:ENST00000344548.8:ENST00000400259.5:ENST00000667384.2:ENST00000411827.2:ENST00000695858.1:ENST00000695857.1:ENST00000315554.14:ENST00000695859.1:ENST00000498236.1:ENST00000656825.1:ENST00000651171.1:ENST00000652582.1:ENST00000695860.1:ENST00000695796.1:ENST00000695797.1:ENST00000662562.2:ENST00000695798.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	39	2	2.08547	2.4984349999999997	2.9114	0.0289426	0.00826019	0.1274	0.0813266
chr7	72918208	72918308	3330181	0	+	0.54	(0.515,0.57]	chr7	309571	40	INTRON	INTRON	POM121	ENSG00000196313.13	ENST00000627934.3:ENST00000395270.5	protein_coding	protein_coding	protein_coding	protein_coding	3	39	2	2.08547	2.4984349999999997	2.9114	0.0289426	0.00826019	0.1274	0.0813266
chr19	215050	215150	7108844	0	-	0.26	[0,0.28]	chr19	713698	2	INTRON	INTRON	LINC01002	ENSG00000282508.2	ENST00000631644.1:ENST00000632624.2:ENST00000633109.1:ENST00000633295.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	6	103	2	1.55075	2.49843	3.44611	0.045475	0.00185186	0.149888	0.039946
chr3	185797667	185797767	1886075	0	-	0.49	(0.476,0.515]	chr3	188573	990	INTRON	INTRON	IGF2BP2	ENSG00000073792.16	ENST00000382199.7:ENST00000346192.7:ENST00000457616.6:ENST00000421047.3:ENST00000461957.5:ENST00000493302.5:ENST00000466476.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	72	2	2.37448	2.4984200000000003	2.62236	0.00517	0.00419067	0.0631506	0.0591344
chr7	32873518	32873616	3515438	0	-	0.489796	(0.476,0.515]	chr7	327768	23	INTRON	INTRON	KBTBD2	ENSG00000170852.12	ENST00000304056.9:ENST00000485611.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	72	2	2.37448	2.4984200000000003	2.62236	0.00517	0.00419067	0.0631506	0.0591344
chrX	123703805	123703905	7878764	0	-	0.48	(0.476,0.515]	chrX	802581	3	SS3_PROX	SS3_PROX:INTRON	THOC2	ENSG00000125676.20	ENST00000245838.13:ENST00000355725.8:ENST00000433883.1:ENST00000419789.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	72	2	2.37448	2.4984200000000003	2.62236	0.00517	0.00419067	0.0631506	0.0591344
chr12	6501221	6501321	5069291	0	+	0.41	(0.408,0.44]	chr12	478656	56	INTRON	INTRON	NCAPD2	ENSG00000010292.13	ENST00000541399.1:ENST00000539714.5:ENST00000382457.8:ENST00000539084.5:ENST00000315579.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	10	92	2	1.36707	2.498395	3.62972	0.027567	7.19047e-4	0.137011	0.0246202
chr12	122131033	122131133	5240393	0	+	0.41	(0.408,0.44]	chr12	497522	1	SS5_PROX	SS5_PROX:INTRON	MLXIP	ENSG00000175727.14	ENST00000319080.12:ENST00000539861.5:ENST00000538061.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	70	2	1.31757	2.498215	3.67886	0.0705974	3.86173e-4	0.184528	0.017761
chr1	113077139	113077239	188133	0	+	0.47	(0.44,0.476]	chr1	20854	31	INTRON	INTRON	LRIG2	ENSG00000198799.12	ENST00000361127.6	protein_coding	protein_coding	protein_coding	protein_coding	11	150	2	2.47133	2.498205	2.52508	0.00121905	2.17467e-4	0.0319984	0.0129301
chr5	179822297	179822388	2561664	0	+	0.494505	(0.476,0.515]	chr5	245028	2	INTRON	INTRON	SQSTM1	ENSG00000161011.20	ENST00000514093.5:ENST00000422245.5:ENST00000481335.5:ENST00000464493.5:ENST00000508284.5:ENST00000389805.9:ENST00000504627.1:ENST00000453046.5:ENST00000510187.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	11	138	2	1.9538	2.498125	3.04245	0.00264114	2.24944e-4	0.0473326	0.013767
chr7	65891043	65891143	3323055	0	+	0.38	(0.378,0.408]	chr7	309012	171	INTRON	INTRON	VKORC1L1	ENSG00000196715.7	ENST00000360768.5:ENST00000648187.1:ENST00000648179.1:ENST00000434382.2	protein_coding	protein_coding	protein_coding	protein_coding	5	76	2	1.90812	2.498105	3.08809	0.0264295	5.71831e-4	0.122506	0.0217398
chr11	118457575	118457675	4872332	0	+	0.4	(0.378,0.408]	chr11	454987	77	INTRON	INTRON	ENSG00000285827:KMT2A	ENSG00000285827.1:ENSG00000118058.24	ENST00000648261.1:ENST00000389506.10:ENST00000534358.8:ENST00000533790.3:ENST00000527869.7:ENST00000649690.2:ENST00000691053.1:ENST00000531904.6:ENST00000649699.1:ENST00000648029.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	47	2	1.8252	2.498045	3.17089	0.0619563	0.00357279	0.174514	0.0548435
chr5	104240382	104240482	2442819	0	+	0.28	[0,0.28]	chr5	234410	1351	INTRON	INTRON	LINC02163	ENSG00000251026.2	ENST00000662211.1:ENST00000666145.1	lncRNA	lncRNA	lncRNA	lncRNA	3	65	2	2.05756	2.49803	2.9385	0.0352544	0.0142776	0.150301	0.0963703
chr13	19766475	19766574	5552780	0	-	0.494949	(0.476,0.515]	chr13	530722	67	INTRON	INTRON	PSPC1	ENSG00000121390.19	ENST00000471658.5:ENST00000492741.5:ENST00000338910.9:ENST00000619300.4:ENST00000427943.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	73	2	1.88582	2.498015	3.11021	0.0273268	5.02606e-4	0.123904	0.020217099999999998
chr1	52443598	52443698	457440	0	-	0.53	(0.515,0.57]	chr1	54961	49	INTRON	INTRON	TUT4	ENSG00000134744.14	ENST00000371544.7:ENST00000257177.9:ENST00000531722.5:ENST00000474453.6:ENST00000469810.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	30	2	2.23241	2.497975	2.76354	0.0581268	0.0147344	0.188651	0.0983813
chr17	75936272	75936371	6839417	0	-	0.555556	(0.515,0.57]	chr17	676274	2	INTRON	INTRON	FBF1	ENSG00000188878.20	ENST00000636174.2:ENST00000586717.5:ENST00000585990.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	30	2	2.23241	2.497975	2.76354	0.0581268	0.0147344	0.188651	0.0983813
chr21	39403928	39404027	7410234	0	+	0.525253	(0.515,0.57]	chr21	755183	62	INTRON	INTRON	GET1	ENSG00000182093.16	ENST00000415847.3:ENST00000623703.3:ENST00000647911.1:ENST00000649100.1:ENST00000649499.1:ENST00000650208.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	30	2	2.23241	2.497975	2.76354	0.0581268	0.0147344	0.188651	0.0983813
chr7	26202416	26202512	3292368	0	+	0.510417	(0.476,0.515]	chr7	305837	8	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	CBX3	ENSG00000122565.19	ENST00000337620.8:ENST00000396386.7:ENST00000456948.5:ENST00000409747.5:ENST00000497498.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	98	2	1.45695	2.49795	3.53895	0.0221052	0.00075485700000000005	0.115552	0.0251966
chr21	6258744	6258844	7425226	0	-	0.33	(0.32,0.35]	chr21	757453	35	INTRON	INTRON	ENSG00000275496	ENSG00000275496.4	ENST00000621924.4:ENST00000617746.4:ENST00000624446.1:ENST00000623405.3:ENST00000623575.3:ENST00000623506.1	lncRNA	lncRNA	lncRNA	lncRNA	3	52	2	2.25173	2.49794	2.74415	0.0198267	0.0180122	0.114436	0.109608
chr5	28876829	28876929	2330518	0	+	0.34	(0.32,0.35]	chr5	225135	663	INTRON	INTRON	LINC02109	ENSG00000259786.7	ENST00000658190.1	lncRNA	lncRNA	lncRNA	lncRNA	3	52	2	2.25173	2.49794	2.74415	0.0198267	0.0180122	0.114436	0.109608
chr15	58899116	58899204	6193777	0	-	0.261364	[0,0.28]	chr15	590077	4	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SLTM	ENSG00000137776.17	ENST00000380516.7:ENST00000492526.5:ENST00000557924.5:ENST00000558756.5:ENST00000249736.11:ENST00000559305.5:ENST00000480144.5:ENST00000628684.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	65	2	1.89998	2.497925	3.09587	0.0599553	0.00651565	0.169548	0.0735232
chr18	21585137	21585236	6954958	0	-	0.252525	[0,0.28]	chr18	688028	3	INTRON	INTRON	ESCO1	ENSG00000141446.11	ENST00000269214.10:ENST00000383276.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	65	2	1.89998	2.497925	3.09587	0.0599553	0.00651565	0.169548	0.0735232
chrX	16692466	16692553	7769337	0	-	0.390805	(0.378,0.408]	chrX	794018	5	INTRON	INTRON	CTPS2	ENSG00000047230.15	ENST00000359276.9:ENST00000443824.5:ENST00000380241.7	protein_coding	protein_coding	protein_coding	protein_coding	3	47	2	2.00398	2.49784	2.9917	0.0393906	0.0068789	0.143072	0.0749442
chrX	139919224	139919323	7905767	0	-	0.40404	(0.378,0.408]	chrX	804457	871	INTRON	INTRON	ATP11C	ENSG00000101974.15	ENST00000370557.5:ENST00000682941.1:ENST00000485626.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	47	2	2.00398	2.49784	2.9917	0.0393906	0.0068789	0.143072	0.0749442
chr1	17422002	17422102	384805	0	-	0.3	(0.28,0.32]	chr1	45472	4	SS5_PROX	SS5_PROX:INTRON	RCC2	ENSG00000179051.14	ENST00000375436.9:ENST00000375433.3	protein_coding	protein_coding	protein_coding	protein_coding	12	205	2	1.78609	2.497805	3.20952	0.0100994	3.21422e-5	0.0850389	0.00452387
chr20	50095789	50095885	7353781	0	-	0.34375	(0.32,0.35]	chr20	749867	1	EXON_LNCRNA	EXON_LNCRNA:SS3_PROX:INTRON	UBE2V1	ENSG00000244687.13	ENST00000340309.7:ENST00000371677.7:ENST00000415862.6:ENST00000557021.5:ENST00000617119.4:ENST00000625172.3:ENST00000396059.7:ENST00000371674.8:ENST00000371657.9:ENST00000483534.5:ENST00000492371.6:ENST00000486653.5:ENST00000490555.1:ENST00000493090.5:ENST00000467839.5:ENST00000472923.5:ENST00000432266.5:ENST00000470565.5:ENST00000490289.5:ENST00000462217.5:ENST00000461960.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	97	2	2.18299	2.497805	2.81262	0.00505063	0.00311322	0.0646039	0.0498063
chr22	29293880	29293976	7496329	0	+	0.489583	(0.476,0.515]	chr22	764849	9	INTRON	INTRON	EWSR1	ENSG00000182944.18	ENST00000629659.2:ENST00000332050.10:ENST00000397938.7:ENST00000406548.5:ENST00000331029.11:ENST00000414183.6:ENST00000332035.10:ENST00000479135.5:ENST00000469669.5:ENST00000483629.5:ENST00000360091.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	69	2	1.84346	2.49774	3.15202	0.0114152	0.00455841	0.095586	0.0595107
chr12	132650563	132650657	5448778	0	-	0.446809	(0.44,0.476]	chr12	521744	4	EXON_LNCRNA	EXON_LNCRNA:INTRON	POLE	ENSG00000177084.18	ENST00000320574.10:ENST00000672742.1:ENST00000672002.1:ENST00000537064.5:ENST00000535270.5:ENST00000536445.5:ENST00000503265.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	92	2	2.1762	2.497705	2.81921	0.0092251	7.10539e-4	0.0855292	0.0243894
chr18	36139613	36139661	6891521	0	+	0.25	[0,0.28]	chr18	682984	1	SS3_ADJ	SS3_ADJ:SS5_ADJ:SS3_PROX:SS5_PROX:INTRON	ELP2	ENSG00000134759.14	ENST00000543127.5:ENST00000544267.5:ENST00000351393.10:ENST00000545632.5:ENST00000442325.6:ENST00000358232.11:ENST00000423854.6:ENST00000539560.5:ENST00000540135.5:ENST00000542430.5:ENST00000350494.10:ENST00000542824.5:ENST00000540799.1:ENST00000543439.5:ENST00000540730.5:ENST00000540323.5:ENST00000536373.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	124	2	2.45904	2.4975899999999998	2.53614	0.0137145	0.00143852	0.0949306	0.034757
chr12	56687810	56687903	5336079	0	-	0.612903	(0.57,1]	chr12	510200	7	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	PTGES3	ENSG00000110958.16	ENST00000537473.2:ENST00000614328.4:ENST00000262033.11:ENST00000414274.7:ENST00000436399.6:ENST00000448157.6:ENST00000456859.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	52	2	2.34591	2.49747	2.64903	0.00182871	9.85026e-4	0.0386771	0.0288488
chr5	139313294	139313392	2499579	0	+	0.316327	(0.28,0.32]	chr5	238922	34	EXON_MRNA	EXON_MRNA:INTRON	MATR3	ENSG00000280987.4:ENSG00000015479.20	ENST00000509990.5:ENST00000506147.5:ENST00000512107.5:ENST00000361059.7:ENST00000394800.6:ENST00000502929.5:ENST00000504203.5:ENST00000509644.5:ENST00000512876.5:ENST00000513678.5:ENST00000513121.1:ENST00000504045.5:ENST00000504311.5:ENST00000502499.5:ENST00000510056.5:ENST00000511249.5:ENST00000394805.8:ENST00000507860.1:ENST00000509918.5:ENST00000503811.5:ENST00000511978.5:ENST00000618441.5:ENST00000514528.5:ENST00000504643.5:ENST00000515833.2:ENST00000514402.1:ENST00000505625.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	21	300	2	1.92707	2.4974100000000004	3.06775	0.00107597	1.63418e-4	0.0300133	0.0116917
chr11	62593590	62593685	4959793	0	-	0.557895	(0.515,0.57]	chr11	466322	5	UTR3	UTR3:EXON_MRNA	MTA2	ENSG00000149480.7	ENST00000278823.7:ENST00000524902.5	protein_coding	protein_coding	protein_coding	protein_coding	4	52	2	2.21273	2.497405	2.78208	0.0196151	0.00209264	0.109486	0.0424943
chr3	185921598	185921687	1886431	0	-	0.539326	(0.515,0.57]	chr3	188617	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TRA2B	ENSG00000136527.19	ENST00000453386.7:ENST00000492417.5:ENST00000463328.5:ENST00000259043.11:ENST00000414862.5:ENST00000487615.5:ENST00000466832.5:ENST00000456380.5:ENST00000382191.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	52	2	2.21273	2.497405	2.78208	0.0196151	0.00209264	0.109486	0.0424943
chr21	39303866	39303966	7465445	0	-	0.58	(0.57,1]	chr21	760568	49	INTRON	INTRON	BRWD1	ENSG00000185658.14	ENST00000333229.6:ENST00000342449.8:ENST00000380800.7:ENST00000341322.4:ENST00000470108.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	31	2	2.46083	2.49733	2.53383	0.02547	0.00255312	0.12011	0.0466386
chr10	68945252	68945352	4443468	0	+	0.38	(0.378,0.408]	chr10	409813	16	INTRON	INTRON	DDX50	ENSG00000107625.14	ENST00000373585.8:ENST00000466265.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	35	2	2.45932	2.497175	2.53503	0.0346754	0.0319942	0.148144	0.13174
chr19	46002408	46002507	7080904	0	+	0.393939	(0.378,0.408]	chr19	708417	57	INTRON	INTRON	CCDC61	ENSG00000104983.8	ENST00000536603.5:ENST00000595358.5:ENST00000596161.5:ENST00000594672.5:ENST00000596687.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	35	2	2.45932	2.497175	2.53503	0.0346754	0.0319942	0.148144	0.13174
chr15	42526769	42526868	6009923	0	+	0.30303	(0.28,0.32]	chr15	572178	47	INTRON	INTRON	SNAP23	ENSG00000092531.10	ENST00000561526.5:ENST00000568451.5:ENST00000563765.5:ENST00000349777.5:ENST00000249647.8:ENST00000564153.5:ENST00000566327.5:ENST00000568331.5:ENST00000566035.5:ENST00000568859.5:ENST00000568514.5:ENST00000397138.5:ENST00000563873.5:ENST00000563830.2:ENST00000568841.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	77	2	2.18092	2.4971300000000003	2.81334	0.0271832	0.00248627	0.123904	0.0461207
chr10	125079101	125079201	4713520	0	-	0.47	(0.44,0.476]	chr10	434897	396	INTRON	INTRON	CTBP2	ENSG00000175029.17	ENST00000337195.9:ENST00000411419.6:ENST00000494626.6:ENST00000531469.5:ENST00000460976.5:ENST00000476817.1:ENST00000530884.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	14	195	2	2.45704	2.4971	2.53716	3.74617e-4	1.46183e-4	0.017947	0.0105179
chr20	38074710	38074810	7269295	0	+	0.29	(0.28,0.32]	chr20	738717	42	INTRON	INTRON	RPRD1B	ENSG00000101413.12	ENST00000462548.6:ENST00000373433.9:ENST00000449186.2:ENST00000618318.1:ENST00000614670.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	78	2	1.76061	2.49708	3.23355	0.0253826	0.004869	0.133676	0.0607461
chr19	20154128	20154227	7156042	0	-	0.50505	(0.476,0.515]	chr19	723569	37	INTRON	INTRON	ENSG00000267383	ENSG00000267383.8	ENST00000593655.5:ENST00000586657.1	lncRNA	lncRNA	lncRNA	lncRNA	8	111	2	2.41121	2.49701	2.58281	0.0110342	1.85131e-4	0.0873897	0.0118667
chr4	48139422	48139522	2135377	0	-	0.34	(0.32,0.35]	chr4	210518	4	SS3_PROX	SS3_PROX:INTRON	TEC	ENSG00000135605.13	ENST00000381501.8:ENST00000505452.5:ENST00000515146.1:ENST00000511150.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	52	2	2.30476	2.496985	2.68921	0.0230336	0.0151817	0.118056	0.108535
chr1	213137183	213137283	311566	0	+	0.41	(0.408,0.44]	chr1	35945	69	INTRON	INTRON	RPS6KC1	ENSG00000136643.12	ENST00000615329.4:ENST00000543354.5:ENST00000614059.4:ENST00000543470.5:ENST00000366960.8:ENST00000366959.4:ENST00000490299.5:ENST00000468069.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	45	2	2.27464	2.496875	2.71911	0.0189489	0.0158016	0.109464	0.108861
chr12	121214759	121214859	5236730	0	+	0.44	(0.408,0.44]	chr12	497064	20	EXON_MRNA	EXON_MRNA:INTRON	P2RX4	ENSG00000135124.16	ENST00000359949.11:ENST00000543430.5:ENST00000337233.9:ENST00000543984.5:ENST00000499638.6:ENST00000543318.5:ENST00000540930.5:ENST00000538701.5:ENST00000542067.5:ENST00000541187.5:ENST00000538417.2:ENST00000314442.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	45	2	2.27464	2.496875	2.71911	0.0189489	0.0158016	0.109464	0.108861
chr5	177325575	177325675	2777338	0	-	0.42	(0.408,0.44]	chr5	261667	74	INTRON	INTRON	LMAN2	ENSG00000169223.16	ENST00000694903.1	protein_coding	processed_transcript	protein_coding	processed_transcript	3	45	2	2.27464	2.496875	2.71911	0.0189489	0.0158016	0.109464	0.108861
chr3	125315652	125315751	1806511	0	-	0.414141	(0.408,0.44]	chr3	181450	2	INTRON	INTRON	ZNF148	ENSG00000163848.20	ENST00000360647.9:ENST00000468369.5:ENST00000484491.5:ENST00000492394.5:ENST00000485866.5:ENST00000465763.5:ENST00000495019.5:ENST00000471196.1	protein_coding	protein_coding	protein_coding	protein_coding	4	55	2	1.53263	2.496835	3.46104	0.0733439	0.00105552	0.190051	0.0299229
chr12	132087154	132087249	5250211	0	+	0.315789	(0.28,0.32]	chr12	499285	15	INTRON	INTRON	EP400P1	ENSG00000185684.16	ENST00000407361.8:ENST00000446190.5:ENST00000690966.1:ENST00000689047.1:ENST00000454179.7:ENST00000689533.1:ENST00000688036.1:ENST00000688136.1:ENST00000488030.5:ENST00000389560.6:ENST00000689403.1:ENST00000443539.6:ENST00000392352.5:ENST00000613241.1:ENST00000539205.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	7	128	2	2.38564	2.496805	2.60797	0.00277183	0.00230684	0.0469265	0.0440898
chr12	132113075	132113173	5250478	0	+	0.428571	(0.408,0.44]	chr12	499315	29	INTRON	INTRON	EP400P1	ENSG00000185684.16	ENST00000446190.5:ENST00000488030.5:ENST00000332441.7:ENST00000641289.3	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	3	45	2	2.21238	2.4968	2.78122	0.0193525	0.015812	0.119831	0.101453
chr22	21818641	21818741	7560896	0	-	0.43	(0.408,0.44]	chr22	773388	104	INTRON	INTRON	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	3	45	2	2.21238	2.4968	2.78122	0.0193525	0.015812	0.119831	0.101453
chr4	73188219	73188319	2160120	0	-	0.29	(0.28,0.32]	chr4	212794	103	INTRON	INTRON	ANKRD17	ENSG00000132466.20	ENST00000358602.9:ENST00000558247.5:ENST00000330838.10:ENST00000509867.6:ENST00000561029.1:ENST00000559367.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	57	2	1.91611	2.496775	3.07744	0.0539102	0.00604536	0.164153	0.0700813
chr7	120991347	120991445	3393662	0	+	0.295918	(0.28,0.32]	chr7	317668	11	INTRON	INTRON	CPED1	ENSG00000106034.18	ENST00000340646.9:ENST00000310396.10:ENST00000428526.5:ENST00000495036.5:ENST00000450913.6:ENST00000520801.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	57	2	1.91611	2.496775	3.07744	0.0539102	0.00604536	0.164153	0.0700813
chr4	126726345	126726444	2237974	0	-	0.333333	(0.32,0.35]	chr4	219029	277	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	7	92	2	2.00211	2.49668	2.99125	0.00958447	0.00445465	0.0820838	0.0610799
chr1	77969264	77969344	494432	0	-	0.2625	[0,0.28]	chr1	58560	2	SS3_PROX	SS3_PROX:INTRON	FUBP1	ENSG00000162613.17	ENST00000370768.7:ENST00000294623.8:ENST00000370767.5:ENST00000421641.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	122	2	2.39627	2.496665	2.59706	0.00894925	0.00264102	0.0799922	0.0473326
chr3	156553254	156553354	1844495	0	-	0.3	(0.28,0.32]	chr3	185594	2	SS5_PROX	SS5_PROX:INTRON	SSR3	ENSG00000114850.7	ENST00000265044.7:ENST00000467789.5:ENST00000476217.5:ENST00000463503.5:ENST00000496050.1:ENST00000467733.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	11	180	2	2.22866	2.49661	2.76456	0.00147147	9.02186e-4	0.0348192	0.0275447
chr3	19953551	19953651	1376100	0	+	0.5	(0.476,0.515]	chr3	145051	3	INTRON	INTRON	RAB5A	ENSG00000144566.11	ENST00000273047.9:ENST00000412966.5:ENST00000446547.5:ENST00000422242.1:ENST00000469122.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	62	2	1.99457	2.4965450000000002	2.99852	0.009924	0.0077575	0.0877296	0.0757402
chr15	69454107	69454203	6059125	0	+	0.614583	(0.57,1]	chr15	576838	5	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	RPLP1	ENSG00000137818.12	ENST00000357790.5:ENST00000260379.11:ENST00000487304.6:ENST00000560274.1:ENST00000488122.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	40	2	2.38391	2.496535	2.60916	0.0104374	0.00119055	0.0902296	0.0315806
chr14	102647605	102647705	5823083	0	+	0.3	(0.28,0.32]	chr14	552490	539	INTRON	INTRON	RCOR1	ENSG00000089902.10	ENST00000262241.7	protein_coding	protein_coding	protein_coding	protein_coding	4	69	2	1.68409	2.4965100000000002	3.30893	0.0548665	0.00260504	0.165463	0.0470772
chr2	126681165	126681264	862260	0	+	0.30303	(0.28,0.32]	chr2	96617	24	INTRON	INTRON	GYPC	ENSG00000136732.16	ENST00000259254.9:ENST00000409836.3:ENST00000356887.12	protein_coding	protein_coding	protein_coding	protein_coding	4	69	2	1.68409	2.4965100000000002	3.30893	0.0548665	0.00260504	0.165463	0.0470772
chr10	130176574	130176673	4536740	0	+	0.40404	(0.378,0.408]	chr10	418830	11	INTRON	INTRON	GLRX3	ENSG00000108010.12	ENST00000331244.10:ENST00000481034.1:ENST00000368644.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	64	2	1.71374	2.49648	3.27922	0.0274158	0.00312717	0.136498	0.0499153
chr4	139165475	139165575	2247230	0	-	0.51	(0.476,0.515]	chr4	219601	256	INTRON	INTRON	ELF2	ENSG00000109381.21	ENST00000394235.6:ENST00000686138.1:ENST00000511184.5:ENST00000511006.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	60	2	2.26789	2.49648	2.72507	0.0176567	0.0029369	0.105233	0.0496505
chr16	57185734	57185830	6493106	0	-	0.666667	(0.57,1]	chr16	627988	3	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	PSME3IP1	ENSG00000172775.17	ENST00000309137.13:ENST00000566077.5:ENST00000567439.5:ENST00000564108.5:ENST00000562324.5:ENST00000567044.5:ENST00000565458.5:ENST00000562406.5:ENST00000566584.5:ENST00000568671.5:ENST00000565760.5:ENST00000566481.5:ENST00000570184.1:ENST00000566681.1:ENST00000565353.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	32	2	2.42282	2.49639	2.56996	0.00879576	0.00499145	0.0790073	0.0646039
chr3	194454492	194454592	1890868	0	-	0.52	(0.515,0.57]	chr3	189209	1	SS3_PROX	SS3_PROX:INTRON	ATP13A3	ENSG00000133657.17	ENST00000687055.1:ENST00000645538.1:ENST00000645319.2:ENST00000690810.1:ENST00000642744.2:ENST00000439040.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	47	2	1.8661	2.496365	3.12663	0.0274846	0.00374498	0.123904	0.0562234
chr2	240013909	240014008	1345615	0	-	0.535354	(0.515,0.57]	chr2	141095	15	UTR3	UTR3:EXON_MRNA:INTRON	NDUFA10	ENSG00000130414.13	ENST00000679183.1:ENST00000677057.1:ENST00000676782.1:ENST00000677407.1:ENST00000676929.1:ENST00000678455.1:ENST00000252711.7:ENST00000677692.1:ENST00000476216.6:ENST00000677395.1:ENST00000678188.1:ENST00000677979.1:ENST00000678914.1:ENST00000678562.1:ENST00000678832.1:ENST00000677155.1:ENST00000677764.1:ENST00000677294.1:ENST00000678468.1:ENST00000678158.1:ENST00000676491.1:ENST00000677114.1:ENST00000404554.5:ENST00000620965.5:ENST00000485344.6:ENST00000679308.1:ENST00000677567.1:ENST00000679158.1:ENST00000443626.5:ENST00000444548.6:ENST00000448880.6:ENST00000677490.1:ENST00000307300.8:ENST00000678898.1:ENST00000677368.1:ENST00000677263.1:ENST00000678289.1:ENST00000676784.1:ENST00000414580.2:ENST00000679332.1:ENST00000678737.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	71	2	1.94449	2.496235	3.04798	0.0122196	5.9198e-4	0.0910127	0.0221485
chr7	131481456	131481555	3418004	0	+	0.393939	(0.378,0.408]	chr7	319290	24	INTRON	INTRON	MKLN1	ENSG00000128585.18	ENST00000421797.6:ENST00000352689.11:ENST00000458153.5:ENST00000498778.5:ENST00000468830.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	36	2	2.26252	2.496225	2.72993	0.056222	0.0188736	0.18407	0.108861
chr9	129822209	129822301	4360242	0	-	0.391304	(0.378,0.408]	chr9	400899	10	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	TOR1A	ENSG00000136827.12	ENST00000351698.5:ENST00000651202.1:ENST00000473604.2:ENST00000473084.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	36	2	2.26252	2.496225	2.72993	0.056222	0.0188736	0.18407	0.108861
chr1	120850627	120850722	536768	0	-	0.463158	(0.44,0.476]	chr1	63056	11	EXON_LNCRNA	EXON_LNCRNA	ENSG00000287979	ENSG00000287979.1	ENST00000664186.1	lncRNA	lncRNA	lncRNA	lncRNA	3	50	2	2.39604	2.49618	2.59632	0.0404291	0.00579248	0.161534	0.0662959
chr9	33023614	33023713	4243004	0	-	0.414141	(0.408,0.44]	chr9	390013	31	INTRON	INTRON	APTX	ENSG00000137074.20	ENST00000673360.1:ENST00000436040.7:ENST00000673487.1:ENST00000467331.6:ENST00000482687.6:ENST00000485479.6:ENST00000460940.6:ENST00000673248.1:ENST00000495360.6:ENST00000468275.6:ENST00000473270.1:ENST00000489583.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	74	2	2.29777	2.4961700000000002	2.69457	0.0067764	0.00331036	0.0711802	0.0527031
chr17	32374406	32374505	6598239	0	+	0.616162	(0.57,1]	chr17	641948	11	UTR3	UTR3:EXON_MRNA:INTRON	ZNF207	ENSG00000010244.19	ENST00000394670.9:ENST00000577908.5:ENST00000581531.5:ENST00000579810.2:ENST00000584416.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	79	2	2.44817	2.4961650000000004	2.54416	4.98378e-4	1.36951e-4	0.0206993	0.0100796
chr22	24021692	24021792	7485264	0	+	0.48	(0.476,0.515]	chr22	763741	96	INTRON	INTRON	CABIN1	ENSG00000099991.18	ENST00000454754.5:ENST00000263119.10:ENST00000617531.4:ENST00000405822.6:ENST00000445422.5:ENST00000398319.6	protein_coding	protein_coding	protein_coding	protein_coding	3	46	2	2.40608	2.496115	2.58615	0.0425709	0.00515536	0.148082	0.0650394
chr6	110885406	110885506	2939050	0	+	0.46	(0.44,0.476]	chr6	276765	94	INTRON	INTRON	AMD1	ENSG00000123505.19	ENST00000451850.6:ENST00000675380.1:ENST00000368882.8:ENST00000672937.2:ENST00000368885.8:ENST00000368877.9:ENST00000368876.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	54	2	2.12992	2.4961149999999996	2.86231	0.012214	0.010975	0.092635	0.0910127
chr9	37135736	37135836	4117810	0	+	0.32	(0.28,0.32]	chr9	375372	84	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000322831.6:ENST00000461038.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	87	2	1.75863	2.49609	3.23355	0.0177071	0.004869	0.11319	0.0607461
chr14	49824484	49824582	5886966	0	-	0.387755	(0.378,0.408]	chr14	558728	37	INTRON	INTRON	NEMF	ENSG00000165525.18	ENST00000298310.10:ENST00000556925.5:ENST00000555970.5:ENST00000555411.1:ENST00000557380.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	63	2	2.47752	2.49608	2.51464	0.0092831	0.00684341	0.0817766	0.0748032
chr2	20329252	20329350	1076569	0	-	0.459184	(0.44,0.476]	chr2	115035	15	INTRON	INTRON	PUM2	ENSG00000055917.16	ENST00000361078.7:ENST00000442400.5:ENST00000420234.5:ENST00000429419.6:ENST00000432105.5:ENST00000446940.5:ENST00000424110.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	65	2	1.77101	2.4959949999999997	3.22098	0.0693975	2.82213e-4	0.184298	0.0149966
chr7	119777994	119778094	3629119	0	-	0.25	[0,0.28]	chr7	337323	255	INTRON	INTRON	LINC02476	ENSG00000225546.6	ENST00000660268.1:ENST00000431071.5:ENST00000426413.2	lncRNA	lncRNA	lncRNA	lncRNA	9	160	2	1.66646	2.49599	3.32552	0.0162471	6.27433e-4	0.109464	0.023031
chr1	54349535	54349635	463191	0	-	0.49	(0.476,0.515]	chr1	55780	138	INTRON	INTRON	SSBP3	ENSG00000157216.16	ENST00000610401.5:ENST00000357475.9:ENST00000371319.8:ENST00000417664.7:ENST00000533946.6:ENST00000326956.12:ENST00000371320.8:ENST00000525990.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	45	2	1.99341	2.495965	2.99852	0.037389	0.0077575	0.155878	0.0757402
chr19	14403982	14404082	7024309	0	+	0.51	(0.476,0.515]	chr19	698801	2	SS3_PROX	SS3_PROX:INTRON	ADGRE5	ENSG00000123146.20	ENST00000358600.7:ENST00000357355.7:ENST00000242786.6	protein_coding	protein_coding	protein_coding	protein_coding	3	45	2	1.99341	2.495965	2.99852	0.037389	0.0077575	0.155878	0.0757402
chr20	4010849	4010949	7309361	0	-	0.49	(0.476,0.515]	chr20	744300	361	INTRON	INTRON	RNF24	ENSG00000101236.17	ENST00000336095.10:ENST00000358395.11:ENST00000545616.2	protein_coding	protein_coding	protein_coding	protein_coding	3	45	2	1.99341	2.495965	2.99852	0.037389	0.0077575	0.155878	0.0757402
chr17	44063000	44063100	6778358	0	-	0.57	(0.515,0.57]	chr17	668123	224	INTRON	INTRON	LSM12	ENSG00000161654.10	ENST00000591247.6:ENST00000293406.8:ENST00000585388.2	protein_coding	protein_coding	protein_coding	protein_coding	7	89	2	1.9888	2.495875	3.00295	0.00963364	2.06595e-4	0.086971	0.0131276
chr12	76069787	76069885	5370073	0	-	0.234694	[0,0.28]	chr12	512322	4	INTRON	INTRON	NAP1L1	ENSG00000187109.15	ENST00000618691.5:ENST00000393263.7:ENST00000431879.7:ENST00000547773.5:ENST00000544816.5:ENST00000542344.5:ENST00000535020.6:ENST00000549596.5:ENST00000552342.5:ENST00000548044.5:ENST00000550934.5:ENST00000551992.5:ENST00000548273.5:ENST00000551600.5:ENST00000547704.5:ENST00000549988.5:ENST00000547479.5:ENST00000549479.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	12	217	2	1.89461	2.49577	3.09693	0.00443397	5.03402e-4	0.061054	0.0207704
chr10	21702604	21702704	4406116	0	+	0.29	(0.28,0.32]	chr10	406537	56	INTRON	INTRON	MLLT10	ENSG00000078403.17	ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000651298.1:ENST00000377059.7:ENST00000651382.1:ENST00000438473.6:ENST00000420525.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	42	2	2.18975	2.49566	2.80157	0.0776042	0.0147132	0.196285	0.106558
chr2	134931256	134931355	872362	0	+	0.30303	(0.28,0.32]	chr2	97663	110	INTRON	INTRON	CCNT2	ENSG00000082258.13	ENST00000419781.5:ENST00000446247.5:ENST00000264157.10:ENST00000452839.5:ENST00000295238.10:ENST00000475094.1:ENST00000417175.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	42	2	2.18975	2.49566	2.80157	0.0776042	0.0147132	0.196285	0.106558
chr9	37273671	37273771	4119194	0	+	0.3	(0.28,0.32]	chr9	375389	868	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000461038.5:ENST00000488607.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	42	2	2.18975	2.49566	2.80157	0.0776042	0.0147132	0.196285	0.106558
chr10	99753342	99753440	4507626	0	+	0.377551	(0.35,0.378]	chr10	415033	26	INTRON	INTRON	CUTC	ENSG00000119929.13	ENST00000370476.10:ENST00000471520.5:ENST00000370472.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	68	2	1.44934	2.4956	3.54186	0.0658369	8.14353e-4	0.181518	0.02604
chr17	16431283	16431383	6562574	0	+	0.43	(0.408,0.44]	chr17	637885	1	SS3_PROX	SS3_PROX:INTRON	TRPV2	ENSG00000187688.15	ENST00000338560.12:ENST00000583241.1:ENST00000577277.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	73	2	2.04611	2.49546	2.94481	0.016628	0.00110214	0.102621	0.03038
chr17	32374007	32374107	6598235	0	+	0.51	(0.476,0.515]	chr17	641948	7	UTR3	UTR3:EXON_MRNA:INTRON	ZNF207	ENSG00000010244.19	ENST00000394670.9:ENST00000577908.5:ENST00000581531.5:ENST00000579810.2:ENST00000584416.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	34	457	2	2.40254	2.49546	2.58838	2.45661e-5	2.39741e-5	0.00407193	0.00383194
chr1	52866202	52866302	105145	0	+	0.42	(0.408,0.44]	chr1	13747	3	SS3_PROX	SS3_PROX:INTRON	ZYG11A	ENSG00000203995.10	ENST00000371532.5:ENST00000612017.4:ENST00000371528.2	protein_coding	protein_coding	protein_coding	protein_coding	3	46	2	2.43988	2.4954549999999998	2.55103	0.0398236	0.00587353	0.143072	0.0690758
chr12	6505918	6506018	5069338	0	+	0.44	(0.408,0.44]	chr12	478656	103	INTRON	INTRON	NCAPD2	ENSG00000010292.13	ENST00000541399.1:ENST00000539714.5:ENST00000382457.8:ENST00000539084.5:ENST00000315579.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	46	2	2.43988	2.4954549999999998	2.55103	0.0398236	0.00587353	0.143072	0.0690758
chr7	43633608	43633708	3525404	0	-	0.44	(0.408,0.44]	chr7	328719	2	SS3_PROX	SS3_PROX:INTRON	COA1	ENSG00000106603.20	ENST00000415076.6:ENST00000446330.6:ENST00000446564.5:ENST00000438444.5	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	3	46	2	2.43988	2.4954549999999998	2.55103	0.0398236	0.00587353	0.143072	0.0690758
chr3	14478265	14478365	1370171	0	+	0.29	(0.28,0.32]	chr3	144386	4	SS3_PROX	SS3_PROX:INTRON	SLC6A6	ENSG00000131389.18	ENST00000613060.4:ENST00000618278.4:ENST00000610642.4:ENST00000649500.1:ENST00000622186.5:ENST00000452151.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	68	2	2.02902	2.495445	2.96187	0.0174423	0.0114995	0.11269	0.0889104
chr5	54039907	54040007	2618203	0	-	0.31	(0.28,0.32]	chr5	248835	1279	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	68	2	2.02902	2.495445	2.96187	0.0174423	0.0114995	0.11269	0.0889104
chr1	6548770	6548870	368063	0	-	0.51	(0.476,0.515]	chr1	43225	32	INTRON	INTRON	NOL9	ENSG00000162408.11	ENST00000377705.6	protein_coding	protein_coding	protein_coding	protein_coding	4	54	2	1.69138	2.4953849999999997	3.29939	0.0481165	0.00211868	0.153019	0.0425644
chr1	176039485	176039585	590020	0	-	0.3	(0.28,0.32]	chr1	70892	114	INTRON	INTRON	COP1	ENSG00000143207.21	ENST00000367669.8:ENST00000367667.5:ENST00000461830.6:ENST00000367666.5:ENST00000649803.1:ENST00000308769.12	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	42	2	2.45545	2.495335	2.53522	0.0438092	0.0310424	0.14901	0.143457
chr14	96533532	96533628	5810489	0	+	0.40625	(0.378,0.408]	chr14	550920	10	UTR3	UTR3:EXON_MRNA:INTRON	PAPOLA	ENSG00000090060.19	ENST00000618976.2:ENST00000216277.13:ENST00000553689.5:ENST00000557320.5:ENST00000392990.6:ENST00000555626.5:ENST00000553461.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	91	2	2.45465	2.495335	2.53602	0.00381582	0.0020933	0.0542786	0.0424943
chr14	96867198	96867298	5811578	0	+	0.32	(0.28,0.32]	chr14	551089	24	EXON_MRNA	EXON_MRNA:INTRON	VRK1	ENSG00000100749.9	ENST00000553683.2:ENST00000680538.1:ENST00000681195.1:ENST00000681524.1:ENST00000680084.1:ENST00000679533.1:ENST00000681598.1:ENST00000679727.1:ENST00000679758.1:ENST00000679977.1:ENST00000680387.1:ENST00000680335.1:ENST00000680683.1:ENST00000681474.1:ENST00000216639.8:ENST00000681363.1:ENST00000681538.1:ENST00000680922.1:ENST00000679903.1:ENST00000681101.1:ENST00000681419.1:ENST00000679941.1:ENST00000680849.1:ENST00000679770.1:ENST00000681493.1:ENST00000681778.1:ENST00000680993.1:ENST00000681355.1:ENST00000681695.1:ENST00000681344.1:ENST00000680007.1:ENST00000679918.1:ENST00000679816.1:ENST00000680756.1:ENST00000681249.1:ENST00000680526.1:ENST00000679365.1:ENST00000680851.1:ENST00000679506.1:ENST00000679650.1:ENST00000679462.1:ENST00000680724.1:ENST00000681061.1:ENST00000681677.1:ENST00000679843.1:ENST00000555067.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	42	2	2.45545	2.495335	2.53522	0.0438092	0.0310424	0.14901	0.143457
chr16	9101485	9101584	6285470	0	+	0.282828	(0.28,0.32]	chr16	601924	81	INTRON	INTRON	C16orf72	ENSG00000182831.12	ENST00000327827.12:ENST00000574285.2	protein_coding	protein_coding	protein_coding	protein_coding	2	42	2	2.45545	2.495335	2.53522	0.0438092	0.0310424	0.14901	0.143457
chr19	16566158	16566251	7149865	0	-	0.301075	(0.28,0.32]	chr19	722377	11	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	SLC35E1	ENSG00000127526.15	ENST00000595753.6:ENST00000409648.8:ENST00000436553.6:ENST00000470077.1:ENST00000488894.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	42	2	2.45545	2.495335	2.53522	0.0438092	0.0310424	0.14901	0.143457
chr6	143441977	143442076	3242282	0	-	0.353535	(0.35,0.378]	chr6	301155	1	INTRON	INTRON	ADAT2	ENSG00000189007.16	ENST00000237283.9	protein_coding	protein_coding	protein_coding	protein_coding	13	198	2	2.24295	2.495335	2.74772	0.00139175	7.87269e-5	0.034071	0.00738627
chr7	17918520	17918620	3496347	0	-	0.29	(0.28,0.32]	chr7	326520	108	INTRON	INTRON	SNX13	ENSG00000071189.21	ENST00000428135.7:ENST00000611725.4:ENST00000409076.6:ENST00000444712.5:ENST00000482558.5:ENST00000409604.1:ENST00000475800.5:ENST00000474067.5:ENST00000471744.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	42	2	2.45545	2.495335	2.53522	0.0438092	0.0310424	0.14901	0.143457
chr19	5652714	5652814	7005604	0	+	0.33	(0.32,0.35]	chr19	694995	2	SS3_PROX	SS3_PROX:INTRON	SAFB	ENSG00000160633.13	ENST00000589863.5:ENST00000588852.2:ENST00000292123.9:ENST00000592224.5:ENST00000586934.5:ENST00000454510.5:ENST00000592707.5:ENST00000592396.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	105	2	1.96288	2.495295	3.02771	0.0239991	2.14325e-4	0.119664	0.0128514
chr6	10723341	10723441	2810580	0	+	0.56	(0.515,0.57]	chr6	264431	1	SS5_PROX	SS5_PROX:INTRON	TMEM14C	ENSG00000111843.14	ENST00000541412.5:ENST00000229563.6:ENST00000466421.5:ENST00000467415.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	49	2	2.15866	2.4952699999999997	2.83188	0.0108207	0.0100547	0.0920575	0.0848452
chr6	166984261	166984361	3264481	0	-	0.54	(0.515,0.57]	chr6	303067	111	INTRON	INTRON	ENSG00000227598	ENSG00000227598.1	ENST00000444102.1	lncRNA	lncRNA	lncRNA	lncRNA	6	72	2	1.89462	2.49521	3.0958	0.0139002	5.63557e-4	0.10247	0.0219303
chr5	131642505	131642604	2719182	0	-	0.393939	(0.378,0.408]	chr5	255631	9	UTR3	UTR3:EXON_MRNA	FNIP1	ENSG00000217128.13	ENST00000510461.6:ENST00000307954.12:ENST00000307968.11	protein_coding	protein_coding	protein_coding	protein_coding	11	155	2	2.21619	2.49519	2.77419	9.55992e-4	4.01914e-4	0.0284395	0.0185763
chr17	28555889	28555981	6744187	0	-	0.532609	(0.515,0.57]	chr17	662290	10	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	PIGS	ENSG00000087111.21	ENST00000268758.13:ENST00000395346.6:ENST00000308360.8:ENST00000492429.2:ENST00000487231.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	71	2	1.86362	2.4951749999999997	3.12673	0.0164561	3.95089e-4	0.102235	0.0178567
chr11	32894432	32894532	4764727	0	+	0.34	(0.32,0.35]	chr11	440609	7	INTRON	INTRON	QSER1	ENSG00000060749.16	ENST00000650167.2:ENST00000399302.7:ENST00000527250.5	protein_coding	protein_coding	protein_coding	protein_coding	4	64	2	2.3011	2.495155	2.68921	0.0230336	0.00617969	0.118056	0.0713552
chr21	33557833	33557927	7397578	0	+	0.340426	(0.32,0.35]	chr21	753527	4	UTR3	UTR3:EXON_MRNA:INTRON	SON	ENSG00000159140.22	ENST00000356577.10:ENST00000381692.6:ENST00000695559.1:ENST00000455528.5:ENST00000300278.8:ENST00000381679.8:ENST00000436227.5:ENST00000421541.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	64	2	2.3011	2.495155	2.68921	0.0230336	0.00617969	0.118056	0.0713552
chr3	194425163	194425241	1890552	0	-	0.333333	(0.32,0.35]	chr3	189115	4	SS5_PROX	SS5_PROX:INTRON	ATP13A3	ENSG00000133657.17	ENST00000687055.1:ENST00000645538.1:ENST00000645319.2:ENST00000690810.1:ENST00000429136.7:ENST00000645621.1:ENST00000685123.1:ENST00000642744.2:ENST00000439040.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	64	2	2.3011	2.495155	2.68921	0.0230336	0.00617969	0.118056	0.0713552
chr3	9990028	9990125	1362000	0	+	0.525773	(0.515,0.57]	chr3	143392	9	INTRON	INTRON	EMC3-AS1	ENSG00000180385.9	ENST00000692142.1:ENST00000366264.6:ENST00000693066.1:ENST00000326237.3:ENST00000440568.1:ENST00000438698.1:ENST00000424904.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	5	64	2	2.4745	2.495055	2.51561	0.00635044	0.00279583	0.0723103	0.0469265
chr4	151002311	151002411	2271642	0	-	0.52	(0.515,0.57]	chr4	220921	729	INTRON	INTRON	LRBA	ENSG00000198589.14	ENST00000357115.9:ENST00000651943.2:ENST00000510413.5:ENST00000651035.1:ENST00000507224.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	62	2	2.11384	2.49505	2.87626	0.0118599	0.00136224	0.0899583	0.0339121
chr19	18908397	18908495	7153257	0	-	0.520408	(0.515,0.57]	chr19	722984	9	INTRON	INTRON	COPE	ENSG00000105669.14	ENST00000262812.9:ENST00000349893.8:ENST00000600932.5:ENST00000598969.5:ENST00000351079.8:ENST00000593827.1:ENST00000597026.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	97	2	2.41082	2.4949700000000004	2.57912	0.00167359	6.01485e-4	0.0370386	0.0223465
chr2	10186310	10186410	691367	0	+	0.45	(0.44,0.476]	chr2	81109	302	INTRON	INTRON	RRM2	ENSG00000171848.16	ENST00000641498.1:ENST00000381786.7	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	3	45	2	1.9039	2.494905	3.08591	0.0501498	0.00481262	0.156383	0.0638089
chr2	235503042	235503142	1041425	0	+	0.46	(0.44,0.476]	chr2	111217	78	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	45	2	1.9039	2.494905	3.08591	0.0501498	0.00481262	0.156383	0.0638089
chr7	39959415	39959515	3310713	0	+	0.51	(0.476,0.515]	chr7	307478	66	INTRON	INTRON	CDK13	ENSG00000065883.17	ENST00000340829.10:ENST00000181839.10:ENST00000613626.4:ENST00000646039.1:ENST00000643859.1	protein_coding	protein_coding	protein_coding	protein_coding	4	54	2	2.16306	2.494895	2.82673	0.0134403	0.00973468	0.0946278	0.0877284
chr8	11863376	11863476	3908813	0	-	0.5	(0.476,0.515]	chr8	358216	5	INTRON	INTRON	CTSB	ENSG00000164733.22	ENST00000677671.1:ENST00000678092.1:ENST00000679128.1:ENST00000677873.1:ENST00000676691.1:ENST00000678598.1:ENST00000353047.11:ENST00000677650.1:ENST00000526481.7:ENST00000676825.1:ENST00000678242.1:ENST00000677366.1:ENST00000677544.1:ENST00000530640.7:ENST00000677418.1:ENST00000677047.1:ENST00000676502.1:ENST00000531089.6:ENST00000678629.1:ENST00000678145.1:ENST00000678929.1:ENST00000677819.1:ENST00000677415.1:ENST00000678357.1:ENST00000676755.1:ENST00000679051.1:ENST00000453527.7:ENST00000678067.1:ENST00000679140.1:ENST00000677082.1:ENST00000533455.6:ENST00000531551.5:ENST00000534382.6:ENST00000679214.1:ENST00000531502.6:ENST00000534510.6:ENST00000677865.1:ENST00000533572.6:ENST00000345125.8:ENST00000526645.6:ENST00000534149.6:ENST00000505496.7:ENST00000532392.2:ENST00000676843.1:ENST00000524500.6:ENST00000525076.6:ENST00000527215.7:ENST00000528965.2:ENST00000532656.7:ENST00000526195.6:ENST00000678615.1:ENST00000527243.6:ENST00000530296.6:ENST00000534636.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	62	2	1.58972	2.494875	3.40003	0.0427022	0.00139193	0.148082	0.0341261
chr1	92710336	92710436	507420	0	-	0.46	(0.44,0.476]	chr1	59878	52	INTRON	INTRON	EVI5	ENSG00000067208.16	ENST00000370331.5:ENST00000540033.2:ENST00000684568.2:ENST00000474806.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	55	2	1.90381	2.49486	3.08591	0.0260626	0.00481262	0.122153	0.0638089
chr18	21625420	21625518	6879288	0	+	0.44898	(0.44,0.476]	chr18	681851	11	INTRON	INTRON	SNRPD1	ENSG00000167088.11	ENST00000300413.10:ENST00000579618.1:ENST00000582475.1	protein_coding	protein_coding	protein_coding	protein_coding	4	55	2	1.90381	2.49486	3.08591	0.0260626	0.00481262	0.122153	0.0638089
chr17	46568465	46568565	6786620	0	-	0.45	(0.44,0.476]	chr17	669366	93	INTRON	INTRON	ARL17A	ENSG00000185829.18	ENST00000445552.6:ENST00000622488.6:ENST00000329240.10:ENST00000573185.5:ENST00000570550.5:ENST00000336125.6	protein_coding	protein_coding	protein_coding	protein_coding	3	45	2	1.96602	2.49484	3.02366	0.0426807	0.00603307	0.148082	0.0700813
chr6	160034713	160034809	3023634	0	+	0.447917	(0.44,0.476]	chr6	282063	3	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	IGF2R	ENSG00000197081.16	ENST00000676781.1:ENST00000677704.1:ENST00000356956.6:ENST00000649737.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	45	2	1.96602	2.49484	3.02366	0.0426807	0.00603307	0.148082	0.0700813
chr3	123956661	123956739	1804130	0	-	0.397436	(0.378,0.408]	chr3	181275	4	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CCDC14	ENSG00000175455.16	ENST00000463996.1:ENST00000409697.8:ENST00000488653.6:ENST00000485727.5:ENST00000495381.5:ENST00000409657.5:ENST00000489746.5:ENST00000433542.7:ENST00000310351.8:ENST00000483247.1:ENST00000435910.5:ENST00000477268.5:ENST00000438440.2:ENST00000417438.1:ENST00000478956.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	133	2	2.25517	2.494835	2.7345	0.00430492	1.43672e-4	0.0577899	0.010412
chr2	219215706	219215795	1331123	0	-	0.47191	(0.44,0.476]	chr2	139474	8	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	ABCB6	ENSG00000115657.14	ENST00000295750.5:ENST00000265316.9:ENST00000497882.5:ENST00000448398.5:ENST00000492953.5:ENST00000417678.5:ENST00000452545.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	65	2	1.90375	2.4948300000000003	3.08591	0.0156406	0.00481262	0.101393	0.0638089
chr10	18675216	18675314	4404238	0	+	0.346939	(0.32,0.35]	chr10	406395	1	UTR3	UTR3:EXON_MRNA	ARL5B	ENSG00000165997.5	ENST00000377275.4	protein_coding	protein_coding	protein_coding	protein_coding	5	72	2	1.63843	2.494795	3.35116	0.0360919	0.00283808	0.152563	0.0473151
chr1	153813752	153813852	556661	0	-	0.48	(0.476,0.515]	chr1	65943	3	SS3_PROX	SS3_PROX:INTRON	GATAD2B	ENSG00000143614.10	ENST00000368655.5:ENST00000634544.1:ENST00000634408.1:ENST00000634564.1	protein_coding	protein_coding	protein_coding	protein_coding	6	68	2	1.61324	2.49478	3.37632	0.026684	0.00195267	0.134419	0.0400465
chr3	156554281	156554369	1844510	0	-	0.420455	(0.408,0.44]	chr3	185605	1	SS5_PROX	SS5_PROX:INTRON	SSR3	ENSG00000114850.7	ENST00000265044.7:ENST00000467789.5:ENST00000476217.5:ENST00000463503.5:ENST00000467733.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	46	2	1.93243	2.49474	3.05705	0.0441194	0.00658331	0.162255	0.0701901
chr1	41231974	41232073	430727	0	-	0.373737	(0.35,0.378]	chr1	52255	454	INTRON	INTRON	SCMH1	ENSG00000010803.17	ENST00000695335.1:ENST00000372596.5:ENST00000372597.5:ENST00000337495.9:ENST00000488592.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	75	2	1.47599	2.494735	3.51348	0.0425671	0.00136294	0.162011	0.0336321
chr3	177028517	177028615	1870718	0	-	0.306122	(0.28,0.32]	chr3	187282	8	INTRON	INTRON	TBL1XR1	ENSG00000177565.18	ENST00000636864.1:ENST00000457928.7:ENST00000430069.5:ENST00000637659.1:ENST00000673974.1:ENST00000631253.2:ENST00000352800.10:ENST00000422442.6:ENST00000626758.1:ENST00000636348.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	159	2	2.4323	2.494495	2.55669	0.00540168	3.33677e-4	0.0644179	0.0162507
chr22	47704088	47704188	7540087	0	+	0.5	(0.476,0.515]	chr22	770710	1	SS3_PROX	SS3_PROX:INTRON	ENSG00000224271	ENSG00000224271.7	ENST00000664761.1:ENST00000651071.1:ENST00000650683.1:ENST00000651536.1:ENST00000652499.1:ENST00000652656.1:ENST00000652072.1:ENST00000651445.1:ENST00000423737.5:ENST00000650834.1:ENST00000650660.1:ENST00000651056.1:ENST00000652611.1:ENST00000652399.1:ENST00000652123.1:ENST00000651311.1:ENST00000651458.1:ENST00000652505.1:ENST00000652702.2:ENST00000652334.1:ENST00000652030.2:ENST00000651403.1:ENST00000652228.1:ENST00000651124.1:ENST00000650972.1:ENST00000651985.1:ENST00000651754.1:ENST00000651637.1:ENST00000650924.1:ENST00000651003.1:ENST00000652168.1:ENST00000651948.2:ENST00000651293.1:ENST00000651939.1:ENST00000650787.1:ENST00000651517.1:ENST00000651662.1:ENST00000652690.1:ENST00000651638.1:ENST00000670853.1:ENST00000652750.1:ENST00000652080.1:ENST00000651294.1:ENST00000652164.1:ENST00000651538.1:ENST00000650775.1:ENST00000651983.1:ENST00000651033.1:ENST00000651584.1:ENST00000650884.1:ENST00000651270.1	lncRNA	lncRNA	lncRNA	lncRNA	4	54	2	1.7425	2.4944	3.2463	0.0417334	0.00262374	0.147007	0.0470772
chr5	32171746	32171846	2597490	0	-	0.48	(0.476,0.515]	chr5	246744	275	INTRON	INTRON	GOLPH3	ENSG00000113384.14	ENST00000265070.7:ENST00000503610.5:ENST00000512668.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	54	2	1.7425	2.4944	3.2463	0.0417334	0.00262374	0.147007	0.0470772
chr14	101870047	101870147	5819596	0	+	0.26	[0,0.28]	chr14	551879	128	INTRON	INTRON	PPP2R5C	ENSG00000078304.20	ENST00000694906.1:ENST00000422945.6:ENST00000328724.9:ENST00000350249.7:ENST00000557621.5:ENST00000556307.5:ENST00000553730.5:ENST00000334743.9:ENST00000445439.7:ENST00000557095.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	204	2	2.39068	2.49432	2.59796	0.00192125	0.00102853	0.0396425	0.0294094
chr19	10676563	10676662	7013442	0	+	0.434343	(0.408,0.44]	chr19	696780	47	INTRON	INTRON	ILF3	ENSG00000129351.17	ENST00000449870.5:ENST00000587928.5:ENST00000407004.7:ENST00000589998.5:ENST00000589600.5:ENST00000590009.5:ENST00000587505.5:ENST00000589052.5:ENST00000250241.12:ENST00000590261.5:ENST00000588657.5:ENST00000592763.5:ENST00000587840.5:ENST00000589416.5:ENST00000585835.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	73	2	2.45003	2.49432	2.53861	0.00990006	0.00202413	0.0838372	0.0416117
chr16	29610111	29610210	6471702	0	-	0.494949	(0.476,0.515]	chr16	625301	153	INTRON	INTRON	ENSG00000288632	ENSG00000288632.1	ENST00000675579.1	lncRNA	lncRNA	lncRNA	lncRNA	13	169	2	2.00746	2.4942900000000003	2.98112	0.00205968	7.29071e-5	0.0410051	0.0071219
chr19	46610590	46610686	7081911	0	+	0.572917	(0.57,1]	chr19	708624	16	UTR3	UTR3:EXON_MRNA	CALM3	ENSG00000160014.17	ENST00000291295.14:ENST00000486500.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	68	2	1.65102	2.494225	3.33743	0.0121756	1.25642e-5	0.0910127	0.00264458
chr19	10181462	10181540	7134743	0	-	0.320513	(0.32,0.35]	chr19	719251	2	INTRON	INTRON	DNMT1	ENSG00000130816.17	ENST00000340748.8:ENST00000359526.9:ENST00000592705.5:ENST00000679103.1:ENST00000677634.1:ENST00000676820.1:ENST00000677250.1:ENST00000677013.1:ENST00000677685.1:ENST00000676610.1:ENST00000678804.1:ENST00000679313.1:ENST00000677946.1:ENST00000586988.5:ENST00000588952.5:ENST00000588118.5:ENST00000592342.5:ENST00000592054.5:ENST00000586800.5:ENST00000586086.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	55	2	2.3471	2.4941950000000004	2.64129	0.0222819	0.0156413	0.124303	0.101393
chr12	132769849	132769944	5449592	0	-	0.357895	(0.35,0.378]	chr12	521960	11	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	GOLGA3	ENSG00000090615.16	ENST00000204726.9:ENST00000450791.8:ENST00000693666.1:ENST00000690057.1:ENST00000688114.1:ENST00000687190.1:ENST00000690511.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	27	400	2	2.40791	2.49419	2.58047	2.26633e-4	1.2982e-5	0.0138494	0.00266543
chr2	177239659	177239758	1275596	0	-	0.282828	(0.28,0.32]	chr2	134708	50	INTRON	INTRON	NFE2L2	ENSG00000116044.16	ENST00000397063.8:ENST00000464747.5:ENST00000397062.8:ENST00000446151.6:ENST00000449627.1:ENST00000448782.5:ENST00000430047.1:ENST00000586532.5:ENST00000421929.5:ENST00000423513.5:ENST00000588123.1:ENST00000477534.1:ENST00000462023.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	129	2	1.89468	2.494145	3.09361	0.019774	1.79432e-4	0.109608	0.0116696
chr5	104163594	104163694	2442051	0	+	0.26	[0,0.28]	chr5	234410	583	INTRON	INTRON	LINC02163	ENSG00000251026.2	ENST00000662211.1:ENST00000666145.1	lncRNA	lncRNA	lncRNA	lncRNA	5	89	2	1.87045	2.494075	3.1177	0.0191786	0.00849154	0.119771	0.0778788
chr1	36396919	36397018	423693	0	-	0.414141	(0.408,0.44]	chr1	51169	24	INTRON	INTRON	LSM10	ENSG00000181817.6	ENST00000476041.1:ENST00000315732.3:ENST00000489912.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	45	2	2.14732	2.494045	2.84077	0.0237354	0.0132196	0.129075	0.0940535
chrX	138984217	138984317	7901405	0	-	0.43	(0.408,0.44]	chrX	804239	1192	INTRON	INTRON	FGF13	ENSG00000129682.16	ENST00000441825.8:ENST00000626909.2:ENST00000436198.5:ENST00000455663.5:ENST00000448673.1:ENST00000421460.1	protein_coding	protein_coding	protein_coding	protein_coding	3	45	2	2.14732	2.494045	2.84077	0.0237354	0.0132196	0.129075	0.0940535
chr1	225781104	225781203	327275	0	+	0.343434	(0.32,0.35]	chr1	37651	27	INTRON	INTRON	SRP9	ENSG00000143742.14	ENST00000626563.2:ENST00000619790.4:ENST00000304786.12:ENST00000650651.1:ENST00000366839.8:ENST00000651465.1:ENST00000651761.1:ENST00000651653.1:ENST00000366838.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	52	2	2.35591	2.494005	2.6321	0.0268	0.0128129	0.123349	0.0990564
chr1	12606183	12606283	379426	0	-	0.36	(0.35,0.378]	chr1	44547	100	INTRON	INTRON	DHRS3	ENSG00000162496.9	ENST00000616661.5:ENST00000464917.5:ENST00000482265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	92	2	1.9392	2.493965	3.04873	0.0126486	0.00106752	0.0982897	0.0299955
chr11	5367695	5367795	4896896	0	-	0.43	(0.408,0.44]	chr11	459187	204	INTRON	INTRON	HBG2:ENSG00000239920:HBE1:OR51B5	ENSG00000196565.15:ENSG00000239920.2:ENSG00000213931.7:ENSG00000167355.8	ENST00000380252.6:ENST00000380259.7:ENST00000292896.3:ENST00000380237.5:ENST00000420726.6:ENST00000420465.6:ENST00000415970.6:ENST00000418729.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:nonsense_mediated_decay:processed_transcript	3	46	2	2.16746	2.4939400000000003	2.82042	0.024436	0.0120121	0.12011	0.0962115
chr15	50453846	50453945	6022516	0	+	0.414141	(0.408,0.44]	chr15	573961	40	INTRON	INTRON	USP8	ENSG00000138592.14	ENST00000396444.7:ENST00000560954.5:ENST00000425032.7:ENST00000307179.9:ENST00000559329.5:ENST00000560885.5:ENST00000560730.5:ENST00000625664.2:ENST00000561211.5:ENST00000558091.5:ENST00000559242.5:ENST00000561330.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:nonsense_mediated_decay:processed_transcript	3	46	2	2.16746	2.4939400000000003	2.82042	0.024436	0.0120121	0.12011	0.0962115
chr19	1591584	1591684	7112513	0	-	0.62	(0.57,1]	chr19	714542	2	SS5_PROX	SS5_PROX:INTRON	MBD3:ENSG00000267059	ENSG00000071655.18:ENSG00000267059.2	ENST00000434436.8:ENST00000156825.5:ENST00000585937.1:ENST00000585967.5:ENST00000592965.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	73	2	1.96816	2.493935	3.01971	0.00403305	3.02803e-5	0.0578376	0.00456454
chr6	31531574	31531659	3078729	0	-	0.447059	(0.44,0.476]	chr6	286733	3	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	DDX39B	ENSG00000198563.14	ENST00000458640.5:ENST00000462256.5:ENST00000376177.6:ENST00000484566.5:ENST00000474961.5:ENST00000396172.6:ENST00000417023.5:ENST00000478365.1:ENST00000482195.5:ENST00000431908.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	18	246	2	2.14849	2.493925	2.83936	8.44064e-4	1.29197e-5	0.0267232	0.00266147
chr15	58708479	58708579	6193102	0	-	0.45	(0.44,0.476]	chr15	589982	7	INTRON	INTRON	ADAM10	ENSG00000137845.15	ENST00000260408.8:ENST00000402627.5:ENST00000561288.1:ENST00000559053.1:ENST00000558733.5:ENST00000439637.5:ENST00000497846.5:ENST00000558004.1:ENST00000560608.5:ENST00000561149.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	83	2	1.79873	2.49389	3.18905	0.0223888	3.33091e-4	0.116918	0.0162254
chr4	39726338	39726438	1953274	0	+	0.4	(0.378,0.408]	chr4	195630	276	INTRON	INTRON	UBE2K	ENSG00000078140.14	ENST00000510934.5:ENST00000261427.10:ENST00000438068.6:ENST00000513231.5:ENST00000503368.5:ENST00000445950.2:ENST00000510719.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	29	392	2	2.21719	2.4938000000000002	2.77041	9.09359e-5	2.83877e-5	0.00797978	0.00439888
chr16	21446477	21446577	6460780	0	-	0.36	(0.35,0.378]	chr16	623226	59	INTRON	INTRON	NPIPB3	ENSG00000169246.16	ENST00000545358.5:ENST00000543368.1:ENST00000544154.1	protein_coding	retained_intron	protein_coding	retained_intron:processed_transcript	6	91	2	1.74826	2.49378	3.2393	0.0279529	2.86552e-4	0.124524	0.0150568
chr2	87478121	87478175	826151	0	+	0.481481	(0.476,0.515]	chr2	92424	1	EXON_LNCRNA	EXON_LNCRNA:INTRON	CYTOR:ENSG00000284879	ENSG00000222041.12:ENSG00000284879.1	ENST00000642796.1:ENST00000643589.1:ENST00000642451.1:ENST00000646386.1:ENST00000644478.1:ENST00000409139.6:ENST00000331944.10:ENST00000644125.1:ENST00000643743.1:ENST00000644577.1:ENST00000643276.1:ENST00000409898.2:ENST00000419680.6:ENST00000644976.1:ENST00000643070.1:ENST00000646855.1:ENST00000414584.1:ENST00000455131.5:ENST00000646636.1:ENST00000642293.1:ENST00000423846.5:ENST00000644040.1:ENST00000645138.1:ENST00000437561.2:ENST00000629257.1:ENST00000414030.6	lncRNA	lncRNA	lncRNA	lncRNA	3	45	2	2.10874	2.493765	2.87879	0.0285608	0.00999149	0.12666	0.0879541
chr9	130761554	130761654	4214340	0	+	0.46	(0.44,0.476]	chr9	386427	467	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000393293.4	protein_coding	protein_coding	protein_coding	protein_coding	14	205	2	2.17311	2.49376	2.81441	0.00116292	4.86591e-5	0.0314524	0.00605189
chr1	27471099	27471199	406574	0	-	0.49	(0.476,0.515]	chr1	48986	418	INTRON	INTRON	WASF2	ENSG00000158195.11	ENST00000618852.5:ENST00000536657.1	protein_coding	protein_coding	protein_coding	protein_coding	5	72	2	2.13573	2.4937500000000004	2.85177	0.0119549	0.00169916	0.0899583	0.0381936
chr17	60383185	60383285	6805786	0	-	0.41	(0.408,0.44]	chr17	672366	372	INTRON	INTRON	USP32	ENSG00000170832.13	ENST00000300896.9:ENST00000590133.5:ENST00000589335.5:ENST00000393003.7:ENST00000588898.1:ENST00000589761.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	100	2	2.4473	2.4937199999999997	2.54014	0.00255945	0.0013419	0.0450085	0.0336974
chr11	9461076	9461176	4730090	0	+	0.65	(0.57,1]	chr11	437969	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ZNF143	ENSG00000166478.10	ENST00000531943.5:ENST00000396604.5:ENST00000530463.5:ENST00000533542.5:ENST00000532577.5:ENST00000396597.7:ENST00000438144.6:ENST00000396602.7:ENST00000496276.5:ENST00000526657.5:ENST00000299606.6:ENST00000534265.5:ENST00000412390.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	32	2	2.47993	2.493675	2.50742	0.007207	0.00631173	0.0756278	0.0687526
chr3	152294216	152294315	1535237	0	+	0.30303	(0.28,0.32]	chr3	159981	241	INTRON	INTRON	MBNL1	ENSG00000152601.18	ENST00000477171.1:ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000461436.1:ENST00000495875.6:ENST00000324210.10:ENST00000493459.5:ENST00000459747.1:ENST00000460591.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	146	2	2.27847	2.493675	2.70888	0.00516929	4.99158e-4	0.0631506	0.020217099999999998
chr8	129555821	129555916	4060844	0	-	0.421053	(0.408,0.44]	chr8	369668	5	INTRON	INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1:ENST00000676273.1:ENST00000667643.1:ENST00000668791.1:ENST00000663716.1:ENST00000663572.1:ENST00000676148.1:ENST00000667962.1:ENST00000674877.1:ENST00000675316.1:ENST00000674656.1:ENST00000446592.7:ENST00000667341.1:ENST00000675186.1:ENST00000652971.1:ENST00000661447.1:ENST00000674863.1:ENST00000675498.1:ENST00000675527.1:ENST00000676108.1:ENST00000657647.1:ENST00000675589.1:ENST00000675913.1:ENST00000675109.1:ENST00000671632.1:ENST00000671311.1:ENST00000676099.1:ENST00000660652.1:ENST00000675522.1:ENST00000675183.1:ENST00000675044.1:ENST00000675435.1:ENST00000674639.1:ENST00000676069.1:ENST00000675532.1:ENST00000674762.1:ENST00000523151.6:ENST00000675948.1:ENST00000665364.1:ENST00000657251.1:ENST00000675166.1:ENST00000674883.1:ENST00000675867.1:ENST00000674580.1:ENST00000675393.1:ENST00000520048.1:ENST00000674906.1:ENST00000676030.1:ENST00000670588.1:ENST00000675072.1:ENST00000664936.1:ENST00000652914.1:ENST00000657069.1:ENST00000674882.1	lncRNA	lncRNA	lncRNA	lncRNA	21	290	2	2.46935	2.4936749999999996	2.518	1.49217e-4	4.18298e-5	0.0111867	0.00524005
chr12	110313707	110313806	5226427	0	+	0.474747	(0.44,0.476]	chr12	495250	166	INTRON	INTRON	ATP2A2	ENSG00000174437.18	ENST00000308664.10:ENST00000539276.7:ENST00000377685.9:ENST00000548169.2:ENST00000550248.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	100	2	1.95383	2.493665	3.0335	0.00489311	9.65686e-4	0.0641889	0.0282401
chr1	19210859	19210959	38683	0	+	0.42	(0.408,0.44]	chr1	4631	3	SS5_PROX	SS5_PROX:INTRON	EMC1-AS1	ENSG00000230424.2	ENST00000437898.2:ENST00000690421.1	lncRNA	lncRNA	lncRNA	lncRNA	4	54	2	2.03431	2.4936350000000003	2.95296	0.0154896	0.00929354	0.108998	0.0817766
chr9	130819353	130819453	4214918	0	+	0.29	(0.28,0.32]	chr9	386427	1045	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000393293.4	protein_coding	protein_coding	protein_coding	protein_coding	3	58	2	1.90263	2.493625	3.08462	0.0503272	0.0078976	0.17488	0.076155
chr1	171505671	171505771	253416	0	+	0.33	(0.32,0.35]	chr1	30096	196	INTRON	INTRON	PRRC2C	ENSG00000117523.18	ENST00000647382.2:ENST00000367742.7:ENST00000476522.5:ENST00000338920.8:ENST00000467601.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	130	2	2.44832	2.493565	2.53881	0.00317745	8.3807e-4	0.0503705	0.0263691
chr4	68313707	68313804	2154504	0	-	0.28866000000000003	(0.28,0.32]	chr4	212203	35	UTR3	UTR3:EXON_MRNA	YTHDC1	ENSG00000083896.13	ENST00000344157.9:ENST00000355665.7:ENST00000579690.5	protein_coding	protein_coding	protein_coding	protein_coding	16	283	2	2.08204	2.493525	2.90501	0.00252683	2.81027e-5	0.0446992	0.00419712
chr22	38395614	38395713	7587814	0	-	0.383838	(0.378,0.408]	chr22	776703	69	INTRON	INTRON	TPTEP2	ENSG00000244627.5	ENST00000428294.5:ENST00000407491.6:ENST00000443042.5:ENST00000457665.5:ENST00000381645.7:ENST00000443658.5:ENST00000455209.5:ENST00000454577.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	4	56	2	2.14029	2.49346	2.84663	0.0133954	0.0106742	0.0946278	0.0917199
chr7	148708112	148708211	3443779	0	+	0.40404	(0.378,0.408]	chr7	321168	76	INTRON	INTRON	CUL1	ENSG00000055130.18	ENST00000409469.5:ENST00000662716.1:ENST00000665936.1:ENST00000663044.1:ENST00000602748.5:ENST00000663835.1:ENST00000655324.1:ENST00000662132.1:ENST00000325222.9:ENST00000656001.1:ENST00000666124.1:ENST00000671421.1:ENST00000671397.1:ENST00000662670.1:ENST00000660240.1:ENST00000662975.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	56	2	2.14029	2.49346	2.84663	0.0133954	0.0106742	0.0946278	0.0917199
chr1	42281969	42282069	431902	0	-	0.52	(0.515,0.57]	chr1	52324	29	INTRON	INTRON	FOXJ3	ENSG00000198815.9	ENST00000372573.5:ENST00000372572.5:ENST00000361776.5:ENST00000545068.5:ENST00000361346.6:ENST00000445886.5	protein_coding	protein_coding	protein_coding	protein_coding	2	29	2	2.23915	2.493435	2.74772	0.0596178	0.0142192	0.16883600000000001	0.103638
chr1	156769834	156769933	231960	0	+	0.565657	(0.515,0.57]	chr1	27482	12	INTRON	INTRON	PRCC	ENSG00000143294.15	ENST00000491853.5:ENST00000271526.9:ENST00000473387.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	29	2	2.23915	2.493435	2.74772	0.0596178	0.0142192	0.16883600000000001	0.103638
chr10	70694035	70694135	4447539	0	+	0.54	(0.515,0.57]	chr10	410366	187	INTRON	INTRON	ADAMTS14	ENSG00000138316.11	ENST00000373207.2:ENST00000373208.5	protein_coding	protein_coding	protein_coding	protein_coding	2	29	2	2.23915	2.493435	2.74772	0.0596178	0.0142192	0.16883600000000001	0.103638
chr16	74417558	74417658	6523657	0	-	0.55	(0.515,0.57]	chr16	631680	1	SS5_PROX	SS5_PROX:INTRON	CLEC18B	ENSG00000140839.13	ENST00000682950.1:ENST00000339953.9:ENST00000425714.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	29	2	2.23915	2.493435	2.74772	0.0596178	0.0142192	0.16883600000000001	0.103638
chr17	44879816	44879895	6781348	0	-	0.544304	(0.515,0.57]	chr17	668837	2	SS3_PROX	SS3_PROX:INTRON	EFTUD2	ENSG00000108883.13	ENST00000426333.7:ENST00000592576.5:ENST00000591382.5:ENST00000402521.7:ENST00000593200.5:ENST00000588374.1:ENST00000589475.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	29	2	2.23915	2.493435	2.74772	0.0596178	0.0142192	0.16883600000000001	0.103638
chr17	66418711	66418811	6663459	0	+	0.52	(0.515,0.57]	chr17	650326	545	INTRON	INTRON	PRKCA	ENSG00000154229.12	ENST00000413366.8:ENST00000578063.5:ENST00000284384.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	29	2	2.23915	2.493435	2.74772	0.0596178	0.0142192	0.16883600000000001	0.103638
chr7	32888489	32888588	3515591	0	-	0.30303	(0.28,0.32]	chr7	327782	82	INTRON	INTRON	KBTBD2	ENSG00000170852.12	ENST00000304056.9:ENST00000485611.5:ENST00000452926.1:ENST00000453627.1:ENST00000423022.1:ENST00000424468.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	77	2	2.14002	2.493365	2.84671	0.0304107	0.00216662	0.130461	0.0434015
chr20	38927723	38927823	7272436	0	+	0.64	(0.57,1]	chr20	739054	4	INTRON	INTRON	FAM83D	ENSG00000101447.15	ENST00000619304.4:ENST00000619850.2	protein_coding	protein_coding	protein_coding	protein_coding	4	29	2	1.89351	2.4933199999999998	3.09313	0.0255126	0.00369015	0.133676	0.0535094
chrX	123972293	123972393	7716858	0	+	0.61	(0.57,1]	chrX	789462	85	INTRON	INTRON	STAG2	ENSG00000101972.20	ENST00000394477.5:ENST00000218089.13:ENST00000455404.5:ENST00000483575.5:ENST00000687810.1:ENST00000687071.1:ENST00000469481.1:ENST00000458700.5:ENST00000371160.5:ENST00000435103.5:ENST00000687852.1:ENST00000371145.8:ENST00000692982.1:ENST00000371157.7:ENST00000691035.1:ENST00000686802.1:ENST00000691383.1:ENST00000686127.1:ENST00000371144.7:ENST00000458176.5:ENST00000466748.5:ENST00000471107.1:ENST00000428941.5:ENST00000435215.5:ENST00000394478.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	29	2	1.89351	2.4933199999999998	3.09313	0.0255126	0.00369015	0.133676	0.0535094
chr10	73718665	73718763	4651948	0	-	0.387755	(0.378,0.408]	chr10	428203	1	SS5_PROX	SS5_PROX:INTRON	BMS1P4	ENSG00000271816.1:ENSG00000242338.6	ENST00000580790.1:ENST00000584747.5:ENST00000441263.1	lncRNA	lncRNA	lncRNA:transcribed_unprocessed_pseudogene	lncRNA:processed_transcript:transcribed_unprocessed_pseudogene	5	64	2	1.93153	2.4932749999999997	3.05502	0.0127237	0.00689519	0.0986314	0.0717484
chr3	72446195	72446295	1745917	0	-	0.39	(0.378,0.408]	chr3	177369	3	SS5_PROX	SS5_PROX:INTRON	RYBP	ENSG00000163602.12	ENST00000477973.5	protein_coding	protein_coding	protein_coding	protein_coding	3	47	2	1.76032	2.493155	3.22599	0.0721577	0.00288652	0.187433	0.0494641
chr12	62322207	62322306	5150177	0	+	0.494949	(0.476,0.515]	chr12	487327	2	INTRON	INTRON	USP15	ENSG00000135655.16	ENST00000353364.7:ENST00000550632.5:ENST00000312635.10:ENST00000280377.10:ENST00000549237.5:ENST00000546694.1:ENST00000552997.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	100	2	1.76217	2.49305	3.22393	0.0111778	3.84737e-4	0.0937192	0.0182343
chr17	74206667	74206763	6672404	0	+	0.34375	(0.32,0.35]	chr17	651050	5	INTRON	INTRON	RPL38	ENSG00000172809.13	ENST00000439590.6:ENST00000311111.11:ENST00000584577.5:ENST00000534490.5:ENST00000533498.1	protein_coding	protein_coding	protein_coding	protein_coding	9	110	2	1.52838	2.49305	3.45772	0.0232351	0.00128487	0.118148	0.0333518
chr1	202499389	202499487	294295	0	+	0.530612	(0.515,0.57]	chr1	33880	22	INTRON	INTRON	PPP1R12B	ENSG00000077157.22	ENST00000391959.5:ENST00000608999.6:ENST00000498070.5:ENST00000290419.9:ENST00000491336.5:ENST00000466273.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	29	2	2.46104	2.49304	2.52504	0.032841	0.029342	0.145164	0.128055
chr10	123138228	123138328	4533141	0	+	0.55	(0.515,0.57]	chr10	418403	6	UTR3	UTR3:EXON_MRNA	HMX3	ENSG00000188620.11	ENST00000357878.7	protein_coding	protein_coding	protein_coding	protein_coding	2	29	2	2.46104	2.49304	2.52504	0.032841	0.029342	0.145164	0.128055
chr19	939227	939326	6992622	0	+	0.535354	(0.515,0.57]	chr19	692392	61	INTRON	INTRON	ARID3A	ENSG00000116017.11	ENST00000263620.8:ENST00000587532.5:ENST00000457152.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	29	2	2.46104	2.49304	2.52504	0.032841	0.029342	0.145164	0.128055
chr2	31962171	31962271	1090632	0	-	0.52	(0.515,0.57]	chr2	116908	184	INTRON	INTRON	MEMO1:DPY30	ENSG00000162959.14:ENSG00000162961.14	ENST00000295065.9:ENST00000446765.5:ENST00000404530.6:ENST00000379383.7:ENST00000490459.5:ENST00000426310.6:ENST00000413686.1:ENST00000407893.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	29	2	2.46104	2.49304	2.52504	0.032841	0.029342	0.145164	0.128055
chr22	21678106	21678206	7482573	0	+	0.54	(0.515,0.57]	chr22	763345	26	INTRON	INTRON	PPIL2	ENSG00000100023.20	ENST00000679795.1:ENST00000679540.1:ENST00000679580.1:ENST00000681286.1:ENST00000680061.1:ENST00000681338.1:ENST00000681956.1:ENST00000679827.1:ENST00000679534.1:ENST00000679479.1:ENST00000680393.1:ENST00000680463.1:ENST00000680426.1:ENST00000335025.12:ENST00000498109.2:ENST00000496819.2:ENST00000398831.8:ENST00000681394.1:ENST00000679477.1:ENST00000626352.2:ENST00000417788.5:ENST00000458567.5:ENST00000681791.1:ENST00000679692.1:ENST00000680962.1:ENST00000679857.1:ENST00000679586.1:ENST00000680094.1:ENST00000484439.5:ENST00000680434.1:ENST00000680109.1:ENST00000406385.1:ENST00000680022.1:ENST00000681137.1:ENST00000680860.1:ENST00000680183.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	29	2	2.46104	2.49304	2.52504	0.032841	0.029342	0.145164	0.128055
chr7	102420036	102420135	3371647	0	+	0.535354	(0.515,0.57]	chr7	315478	122	INTRON	INTRON	PRKRIP1	ENSG00000128563.13	ENST00000469763.5:ENST00000482549.5:ENST00000496391.5:ENST00000482465.5:ENST00000462601.5:ENST00000397912.3:ENST00000468316.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	29	2	2.46104	2.49304	2.52504	0.032841	0.029342	0.145164	0.128055
chr9	33010407	33010507	4242869	0	-	0.57	(0.515,0.57]	chr9	390001	89	INTRON	INTRON	APTX	ENSG00000137074.20	ENST00000673360.1:ENST00000436040.7:ENST00000673487.1:ENST00000467331.6:ENST00000482687.6:ENST00000485479.6:ENST00000460940.6:ENST00000673248.1:ENST00000495360.6:ENST00000672281.1:ENST00000468275.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	29	2	2.46104	2.49304	2.52504	0.032841	0.029342	0.145164	0.128055
chr1	23332517	23332617	399470	0	-	0.46	(0.44,0.476]	chr1	47865	84	INTRON	INTRON	HNRNPR	ENSG00000125944.21	ENST00000478691.5:ENST00000302271.11:ENST00000374616.7:ENST00000374612.5:ENST00000675048.1:ENST00000606561.5:ENST00000427764.3:ENST00000463552.5:ENST00000470941.5:ENST00000476451.2	protein_coding	protein_coding	protein_coding	protein_coding	5	74	2	1.7651	2.4930399999999997	3.22098	0.039388	2.82213e-4	0.143072	0.0149966
chr3	49362014	49362109	1693553	0	-	0.463158	(0.44,0.476]	chr3	173674	11	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	RHOA	ENSG00000067560.14	ENST00000678200.1:ENST00000422781.6:ENST00000676712.2:ENST00000678921.2:ENST00000445425.6:ENST00000454011.7:ENST00000418115.6:ENST00000679208.1	protein_coding	protein_coding	protein_coding	protein_coding	5	74	2	1.7651	2.4930399999999997	3.22098	0.039388	2.82213e-4	0.143072	0.0149966
chr8	37896574	37896674	3935916	0	-	0.34	(0.32,0.35]	chr8	360576	186	INTRON	INTRON	RAB11FIP1	ENSG00000156675.16	ENST00000330843.9:ENST00000287263.8:ENST00000522727.5	protein_coding	protein_coding	protein_coding	protein_coding	15	218	2	2.07754	2.4929699999999997	2.9084	8.56553e-4	2.75433e-4	0.0265787	0.0152132
chr7	139285869	139285968	3437147	0	+	0.363636	(0.35,0.378]	chr7	320271	9	INTRON	INTRON	UBN2	ENSG00000157741.15	ENST00000473989.8	protein_coding	protein_coding	protein_coding	protein_coding	4	60	2	1.87726	2.4929449999999997	3.10863	0.0297629	0.00470896	0.12908	0.0631419
chr4	39707873	39707973	1953089	0	+	0.42	(0.408,0.44]	chr4	195630	91	INTRON	INTRON	UBE2K	ENSG00000078140.14	ENST00000510934.5:ENST00000261427.10:ENST00000438068.6:ENST00000513231.5:ENST00000503368.5:ENST00000445950.2:ENST00000510719.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	100	2	2.45395	2.49292	2.53189	0.00366321	8.78846e-4	0.0535094	0.0269932
chrX	154706841	154706941	7914874	0	-	0.4	(0.378,0.408]	chrX	806091	64	INTRON	INTRON	GAB3	ENSG00000160219.12	ENST00000496390.5:ENST00000424127.3:ENST00000369575.7:ENST00000369568.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	64	2	2.35527	2.49292	2.63057	0.0121511	0.0053733	0.0963966	0.0642754
chr11	9575276	9575375	4730804	0	+	0.363636	(0.35,0.378]	chr11	438081	7	UTR5	UTR5:EXON_MRNA:INTRON	WEE1	ENSG00000166483.12	ENST00000680141.1:ENST00000450114.7:ENST00000299613.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	49	2	1.87717	2.4928999999999997	3.10863	0.0555068	0.00470896	0.165463	0.0631419
chr14	75134493	75134591	5924359	0	-	0.438776	(0.408,0.44]	chr14	563168	32	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TMED10	ENSG00000170348.9	ENST00000303575.9:ENST00000556969.5:ENST00000557670.5:ENST00000555036.1:ENST00000555873.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	62	2	1.92871	2.49288	3.05705	0.0127189	0.00658331	0.0986242	0.0701901
chr6	107447292	107447392	3181791	0	-	0.43	(0.408,0.44]	chr6	296346	1126	INTRON	INTRON	PDSS2	ENSG00000164494.12	ENST00000369037.9:ENST00000369031.4	protein_coding	protein_coding	protein_coding	protein_coding	6	72	2	2.08773	2.49284	2.89795	0.0110735	0.00404379	0.0873897	0.0578376
chr4	39926513	39926593	2131689	0	-	0.225	[0,0.28]	chr4	210231	2	SS5_PROX	SS5_PROX:INTRON	PDS5A	ENSG00000121892.15	ENST00000303538.13:ENST00000503396.5:ENST00000513798.1	protein_coding	protein_coding	protein_coding	protein_coding	10	193	2	1.58065	2.49281	3.40497	0.0286184	4.8568e-5	0.126904	0.00568992
chr8	21931109	21931208	3711032	0	+	0.464646	(0.44,0.476]	chr8	344395	91	INTRON	INTRON	XPO7	ENSG00000130227.17	ENST00000252512.14:ENST00000521303.5:ENST00000519769.5:ENST00000518017.1:ENST00000520754.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	46	2	2.24189	2.492805	2.74372	0.0193405	0.0153007	0.108861	0.108569
chr8	94439043	94439143	3993092	0	-	0.47	(0.44,0.476]	chr8	365531	22	INTRON	INTRON	RAD54B	ENSG00000197275.14	ENST00000336148.10:ENST00000463267.5:ENST00000518998.5:ENST00000523839.5:ENST00000297592.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	46	2	2.24189	2.492805	2.74372	0.0193405	0.0153007	0.108861	0.108569
chr9	5046013	5046112	4096434	0	+	0.363636	(0.35,0.378]	chr9	373255	11	INTRON	INTRON	JAK2	ENSG00000096968.14	ENST00000636127.1:ENST00000381652.4	protein_coding	protein_coding	protein_coding	protein_coding	3	49	2	2.44701	2.492785	2.53856	0.0326077	0.00900997	0.133687	0.0851009
chr7	92204198	92204298	3569717	0	-	0.43	(0.408,0.44]	chr7	332509	2	PRIMIRNA	PRIMIRNA:INTRON	ENSG00000289027:KRIT1:MIR1285-1	ENSG00000289027.1:ENSG00000001631.17:ENSG00000221520.1	ENST00000692281.1:ENST00000693096.1:ENST00000688180.1:ENST00000394507.5:ENST00000692807.1:ENST00000340022.6:ENST00000394505.7:ENST00000486261.5:ENST00000458177.7:ENST00000684808.1:ENST00000444960.6:ENST00000691239.1:ENST00000686094.1:ENST00000686527.1:ENST00000690529.1:ENST00000689411.1:ENST00000688665.1:ENST00000692157.1:ENST00000686043.1:ENST00000690720.1:ENST00000692690.1:ENST00000690908.1:ENST00000691827.1:ENST00000690751.1:ENST00000425073.2:ENST00000687876.1:ENST00000690904.1:ENST00000688781.1:ENST00000686785.1:ENST00000689556.1:ENST00000688314.1:ENST00000688404.1:ENST00000690292.1:ENST00000687135.1:ENST00000689082.1:ENST00000686149.1:ENST00000475770.6:ENST00000454017.6:ENST00000692361.1:ENST00000689778.1:ENST00000686619.1:ENST00000688766.1:ENST00000688580.1:ENST00000693563.1:ENST00000685431.1:ENST00000689539.1:ENST00000412043.6:ENST00000394503.6:ENST00000433016.6:ENST00000445516.2:ENST00000686233.1:ENST00000408593.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:primary_miRNA	14	179	2	1.85466	2.49269	3.13072	0.00271117	5.33669e-5	0.0480892	0.00640949
chr7	158659007	158659106	3688316	0	-	0.434343	(0.408,0.44]	chr7	342172	2	INTRON	INTRON	NCAPG2	ENSG00000146918.20	ENST00000356309.8:ENST00000432615.5:ENST00000409423.5:ENST00000441982.5:ENST00000467785.5:ENST00000409339.3:ENST00000474940.5:ENST00000475918.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	93	2	1.64167	2.49268	3.34369	0.0266976	1.46092e-4	0.123349	0.0105174
chr2	235540835	235540935	1041805	0	+	0.43	(0.408,0.44]	chr2	111222	159	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1:ENST00000402604.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	62	2	1.6546400000000001	2.492655	3.33067	0.0329965	0.0024459	0.145298	0.0445752
chr7	107199073	107199171	3378672	0	+	0.428571	(0.408,0.44]	chr7	316368	21	INTRON	INTRON	HBP1	ENSG00000105856.14	ENST00000468410.5:ENST00000222574.9:ENST00000485846.5:ENST00000463202.5:ENST00000461963.1:ENST00000607681.1:ENST00000463790.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	83	2	2.22819	2.49263	2.75707	0.00373083	0.00317496	0.0561984	0.0503542
chr16	84736954	84737053	6410281	0	+	0.545455	(0.515,0.57]	chr16	615290	31	INTRON	INTRON	USP10	ENSG00000103194.16	ENST00000562743.5:ENST00000540269.6:ENST00000563892.5:ENST00000562092.1:ENST00000219473.12:ENST00000570191.5:ENST00000563048.5:ENST00000562283.5:ENST00000563386.5:ENST00000569038.5:ENST00000570053.1:ENST00000566512.1:ENST00000563023.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	62	2	2.48902	2.4925100000000002	2.496	0.00760558	0.00225531	0.0749571	0.0436331
chr9	124745439	124745539	4348957	0	-	0.54	(0.515,0.57]	chr9	399261	117	INTRON	INTRON	NR6A1	ENSG00000148200.17	ENST00000487099.7:ENST00000373584.7:ENST00000416460.6:ENST00000344523.8	protein_coding	protein_coding	protein_coding	protein_coding	5	53	2	1.89462	2.49232	3.09002	0.0139002	0.00491099	0.10247	0.0609494
chr5	157853531	157853631	2758599	0	-	0.45	(0.44,0.476]	chr5	260304	356	INTRON	INTRON	CLINT1	ENSG00000113282.14	ENST00000523094.5:ENST00000411809.7:ENST00000530742.5:ENST00000523908.5	protein_coding	protein_coding	protein_coding	protein_coding	3	45	2	1.83899	2.4922899999999997	3.14559	0.0589734	0.00384923	0.167915	0.0562562
chr10	35337607	35337707	4424513	0	+	0.5	(0.476,0.515]	chr10	407898	4	SS5_PROX	SS5_PROX:INTRON	CCNY	ENSG00000108100.18	ENST00000374706.5:ENST00000490012.6:ENST00000493157.6:ENST00000374704.8:ENST00000265375.13:ENST00000339497.7:ENST00000492478.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	82	2	2.14389	2.492285	2.84068	0.00540862	0.00217133	0.066545000000000007	0.0417893
chr6	85618317	85618417	3151196	0	-	0.48	(0.476,0.515]	chr6	293868	1	SS5_PROX	SS5_PROX:INTRON	ENSG00000271793:SYNCRIP	ENSG00000271793.2:ENSG00000135316.19	ENST00000682083.1:ENST00000683074.1:ENST00000681965.1:ENST00000682504.1:ENST00000682106.1:ENST00000683364.1:ENST00000683436.1:ENST00000684220.1:ENST00000683909.1:ENST00000684462.1:ENST00000616122.5:ENST00000678528.1:ENST00000676637.1:ENST00000677771.1:ENST00000355238.11:ENST00000678878.1:ENST00000677481.1:ENST00000677646.1:ENST00000676630.1:ENST00000678618.1:ENST00000676542.1:ENST00000677059.1:ENST00000444272.2:ENST00000678899.1:ENST00000369622.8:ENST00000678355.1:ENST00000676688.1:ENST00000677514.1:ENST00000678816.1:ENST00000678930.1:ENST00000678589.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	13	175	2	2.23879	2.492255	2.74572	5.83195e-4	1.96887e-4	0.0219397	0.0128602
chr2	167919140	167919240	1258994	0	-	0.42	(0.408,0.44]	chr2	133340	180	INTRON	INTRON	B3GALT1-AS1	ENSG00000235335.3	ENST00000430546.2:ENST00000657553.1:ENST00000670221.1:ENST00000436982.2	lncRNA	lncRNA	lncRNA	lncRNA	5	73	2	2.15938	2.492245	2.82511	0.011260300000000001	0.00189528	0.0884004	0.0402736
chr19	13760521	13760615	7023239	0	+	0.404255	(0.378,0.408]	chr19	698458	9	INTRON	INTRON	YJU2B	ENSG00000104957.14	ENST00000586600.5:ENST00000593174.5:ENST00000221554.13:ENST00000586666.5:ENST00000587019.5:ENST00000585844.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	75	2	2.42827	2.4921699999999998	2.55607	0.00704647	0.00336942	0.0718189	0.0532965
chr14	101789580	101789680	5818774	0	+	0.33	(0.32,0.35]	chr14	551827	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	PPP2R5C	ENSG00000078304.20	ENST00000694906.1:ENST00000422945.6:ENST00000554442.5:ENST00000556068.5:ENST00000328724.9:ENST00000554504.1:ENST00000553890.1:ENST00000553554.1:ENST00000556086.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	122	2	2.35316	2.492155	2.63115	0.00608073	8.28744e-4	0.0676501	0.0263691
chr1	223791117	223791214	642805	0	-	0.474227	(0.44,0.476]	chr1	75870	16	INTRON	INTRON	TP53BP2	ENSG00000143514.17	ENST00000343537.12:ENST00000391878.6:ENST00000483398.5:ENST00000498843.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	45	2	2.02558	2.49209	2.9586	0.0363567	0.00758318	0.138959	0.0773151
chr9	36468229	36468329	4250526	0	-	0.35	(0.32,0.35]	chr9	391466	432	INTRON	INTRON	RNF38	ENSG00000137075.18	ENST00000488058.1	protein_coding	processed_transcript	protein_coding	processed_transcript	4	71	2	2.45306	2.492065	2.53107	0.00916394	0.00860484	0.0855292	0.0784134
chr9	111416852	111416940	4314601	0	-	0.443182	(0.44,0.476]	chr9	396754	1	INTRON	INTRON	ECPAS	ENSG00000136813.15	ENST00000684092.1:ENST00000338205.9:ENST00000259335.8:ENST00000602447.5	protein_coding	protein_coding	protein_coding	protein_coding	4	60	2	2.38519	2.492035	2.59888	0.012193	0.00487719	0.0910127	0.0640618
chr10	68332735	68332834	4440765	0	+	0.646465	(0.57,1]	chr10	409480	1	INTRON	INTRON	HNRNPH3	ENSG00000096746.18	ENST00000469172.5:ENST00000461310.5:ENST00000265866.12:ENST00000480987.5:ENST00000486854.5:ENST00000467249.1:ENST00000354695.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	43	2	1.42019	2.49194	3.56369	0.0315411	4.26536e-4	0.144381	0.0189958
chr1	246923358	246923457	681877	0	-	0.333333	(0.32,0.35]	chr1	80043	46	INTRON	INTRON	AHCTF1	ENSG00000153207.16	ENST00000648844.2:ENST00000326225.3:ENST00000366508.5	protein_coding	protein_coding	protein_coding	protein_coding	13	208	2	2.22181	2.491905	2.762	7.98677e-4	2.99124e-4	0.0258804	0.0160513
chr22	42089828	42089928	7592441	0	-	0.54	(0.515,0.57]	chr22	777678	3	EXON_LNCRNA	EXON_LNCRNA:INTRON	NDUFA6:ENSG00000270083	ENSG00000184983.11:ENSG00000270083.1	ENST00000498737.8:ENST00000617763.1:ENST00000602718.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	3	43	2	2.35125	2.491875	2.6325	0.0436431	0.00439001	0.162255	0.0585064
chr1	31023496	31023596	412471	0	-	0.41	(0.408,0.44]	chr1	49725	160	INTRON	INTRON	PUM1	ENSG00000134644.16	ENST00000426105.7:ENST00000373747.7:ENST00000257075.9:ENST00000424085.6:ENST00000525843.5:ENST00000440538.6:ENST00000373741.8:ENST00000373742.6:ENST00000526215.5:ENST00000525948.5:ENST00000480602.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	34	2	2.3975	2.49187	2.58624	0.040266	0.0273686	0.161534	0.123904
chr16	70477182	70477269	6385094	0	+	0.436782	(0.408,0.44]	chr16	613838	5	INTRON	INTRON	FCSK	ENSG00000157353.17	ENST00000288078.11:ENST00000378912.6:ENST00000464499.5:ENST00000571514.5:ENST00000498702.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	34	2	2.3975	2.49187	2.58624	0.040266	0.0273686	0.161534	0.123904
chr17	29511480	29511578	6586862	0	+	0.438776	(0.408,0.44]	chr17	640460	6	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	TAOK1	ENSG00000160551.12	ENST00000261716.8:ENST00000536202.1:ENST00000577583.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	34	2	2.3975	2.49187	2.58624	0.040266	0.0273686	0.161534	0.123904
chr2	73053132	73053230	1155781	0	-	0.428571	(0.408,0.44]	chr2	123513	29	INTRON	INTRON	SFXN5	ENSG00000144040.13	ENST00000272433.7:ENST00000461352.5:ENST00000474528.5:ENST00000411783.5:ENST00000410065.5:ENST00000416579.5:ENST00000450185.5:ENST00000442582.1:ENST00000487508.5:ENST00000497144.5:ENST00000479293.5:ENST00000485057.5:ENST00000475630.5:ENST00000472259.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	34	2	2.3975	2.49187	2.58624	0.040266	0.0273686	0.161534	0.123904
chr5	141615701	141615801	2740156	0	-	0.41	(0.408,0.44]	chr5	258168	271	INTRON	INTRON	DIAPH1	ENSG00000131504.18	ENST00000647433.1:ENST00000389054.8:ENST00000518047.5:ENST00000523100.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	34	2	2.3975	2.49187	2.58624	0.040266	0.0273686	0.161534	0.123904
chr8	123451915	123452015	3851745	0	+	0.44	(0.408,0.44]	chr8	354887	33	INTRON	INTRON	NTAQ1	ENSG00000156795.8	ENST00000650311.1:ENST00000523551.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	34	2	2.3975	2.49187	2.58624	0.040266	0.0273686	0.161534	0.123904
chr16	1616983	1617082	6274566	0	+	0.484848	(0.476,0.515]	chr16	599386	16	INTRON	INTRON	CRAMP1	ENSG00000007545.16	ENST00000397412.8:ENST00000293925.9	protein_coding	protein_coding	protein_coding	protein_coding	4	54	2	1.58335	2.49169	3.40003	0.0640461	0.00139193	0.177882	0.0341261
chr17	46180326	46180426	6784744	0	-	0.5	(0.476,0.515]	chr17	669245	77	INTRON	INTRON	KANSL1	ENSG00000120071.15	ENST00000574590.6:ENST00000572904.6:ENST00000432791.7:ENST00000575318.6:ENST00000638275.1:ENST00000262419.10:ENST00000648792.1:ENST00000639150.1:ENST00000571698.2:ENST00000639375.1:ENST00000638269.1:ENST00000639356.1:ENST00000574655.6:ENST00000639099.1:ENST00000638902.1:ENST00000576739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	54	2	1.58335	2.49169	3.40003	0.0640461	0.00139193	0.177882	0.0341261
chr7	129938327	129938427	3637827	0	-	0.5	(0.476,0.515]	chr7	338230	7	INTRON	INTRON	UBE2H	ENSG00000186591.13	ENST00000355621.8:ENST00000473814.6:ENST00000496698.5:ENST00000472396.5:ENST00000480245.5:ENST00000490974.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	54	2	1.58335	2.49169	3.40003	0.0640461	0.00139193	0.177882	0.0341261
chr6	4852702	4852802	2791626	0	+	0.31	(0.28,0.32]	chr6	263602	160	INTRON	INTRON	CDYL	ENSG00000153046.18	ENST00000328908.9:ENST00000491864.1:ENST00000440139.5:ENST00000483019.1:ENST00000397588.8:ENST00000472453.5:ENST00000449732.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	92	2	2.4468	2.4916400000000003	2.53648	0.00925866	0.0037095	0.0817766	0.0561833
chr19	55655553	55655653	7101518	0	+	0.62	(0.57,1]	chr19	712493	4	SS5_PROX	SS5_PROX:INTRON	U2AF2	ENSG00000063244.13	ENST00000450554.6:ENST00000308924.9:ENST00000588850.5:ENST00000587196.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	38	2	2.32017	2.49161	2.66305	0.00488159	0.00327879	0.0640618	0.0509077
chr1	65059039	65059139	475480	0	-	0.31	(0.28,0.32]	chr1	57245	8	INTRON	INTRON	JAK1	ENSG00000162434.13	ENST00000672434.1:ENST00000671954.1:ENST00000673502.1:ENST00000672751.1:ENST00000672099.1	protein_coding	protein_coding	protein_coding	protein_coding	3	57	2	2.00989	2.4916099999999997	2.97333	0.0427801	0.00857834	0.148082	0.083729
chr17	81609612	81609709	6849327	0	-	0.309278	(0.28,0.32]	chr17	678209	3	INTRON	INTRON	NPLOC4	ENSG00000182446.14	ENST00000331134.11:ENST00000374747.9:ENST00000574897.5:ENST00000570324.1:ENST00000574344.5:ENST00000625705.1:ENST00000570300.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	57	2	2.00989	2.4916099999999997	2.97333	0.0427801	0.00857834	0.148082	0.083729
chr8	92782875	92782975	3989934	0	-	0.37	(0.35,0.378]	chr8	365352	174	INTRON	INTRON	FLJ46284	ENSG00000248858.7	ENST00000504861.2	lncRNA	lncRNA	lncRNA	lncRNA	4	66	2	2.14264	2.491605	2.84057	0.0274795	0.00189462	0.123904	0.0402736
chr21	29304698	29304798	7392409	0	+	0.52	(0.515,0.57]	chr21	753180	1	SS3_PROX	SS3_PROX:INTRON	BACH1	ENSG00000156273.16	ENST00000548219.5:ENST00000550131.5:ENST00000547141.5:ENST00000546469.5:ENST00000286800.8:ENST00000399921.5:ENST00000548467.1:ENST00000451655.5:ENST00000447177.5	protein_coding	protein_coding	protein_coding	protein_coding	3	39	2	1.79136	2.4915700000000003	3.19178	0.0638444	0.00289534	0.177811	0.0494641
chr17	17231197	17231293	6736012	0	-	0.364583	(0.35,0.378]	chr17	660923	19	INTRON	INTRON	FLCN	ENSG00000154803.13	ENST00000285071.9:ENST00000389169.9:ENST00000417064.1:ENST00000389171.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	59	2	2.20096	2.4915399999999996	2.78212	0.0168532	0.0087123	0.103549	0.0844834
chr12	119676036	119676136	5234919	0	+	0.55	(0.515,0.57]	chr12	496708	1	SS3_PROX	SS3_PROX:INTRON	PRKAB1	ENSG00000111725.11	ENST00000541640.5:ENST00000229328.10:ENST00000540121.5:ENST00000545223.1:ENST00000545870.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	86	2	1.81744	2.49148	3.16552	0.031028	8.25408e-5	0.143457	0.00812487
chr4	25258146	25258244	1933144	0	+	0.306122	(0.28,0.32]	chr4	194068	11	INTRON	INTRON	PI4K2B	ENSG00000038210.14	ENST00000512921.4:ENST00000264864.8	protein_coding	protein_coding	protein_coding	protein_coding	4	69	2	1.71442	2.49146	3.2685	0.0454351	0.00432734	0.164236	0.0579331
chr8	90318961	90319061	3793283	0	+	0.22	[0,0.28]	chr8	351786	718	INTRON	INTRON	LINC00534	ENSG00000253394.7	ENST00000662145.1:ENST00000655523.1:ENST00000517400.6:ENST00000658299.1:ENST00000663329.1:ENST00000658342.1:ENST00000523283.6:ENST00000655219.1:ENST00000662692.1:ENST00000667296.1:ENST00000667565.1:ENST00000523406.2:ENST00000659030.1:ENST00000653734.1:ENST00000654785.1:ENST00000524361.5:ENST00000668745.1:ENST00000666641.2:ENST00000661519.1:ENST00000671657.1:ENST00000655123.1:ENST00000663098.1:ENST00000670903.1:ENST00000654946.1	lncRNA	lncRNA	lncRNA	lncRNA	6	99	2	1.73604	2.491315	3.24659	0.0209881	0.00570201	0.122348	0.0656459
chr16	23897351	23897451	6324374	0	+	0.35	(0.32,0.35]	chr16	605701	36	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000498739.1	protein_coding	protein_coding	protein_coding	protein_coding	13	207	2	2.39392	2.4912400000000003	2.58856	6.96512e-4	3.10648e-4	0.024224	0.0158045
chr7	105060366	105060466	3375086	0	+	0.33	(0.32,0.35]	chr7	315877	190	INTRON	INTRON	KMT2E	ENSG00000005483.22	ENST00000622386.2:ENST00000257745.9:ENST00000334884.9:ENST00000311117.8:ENST00000478990.5:ENST00000495267.5:ENST00000476671.5:ENST00000667857.1:ENST00000474203.5:ENST00000482560.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	16	261	2	1.90502	2.4912349999999996	3.07745	0.00457332	6.73684e-6	0.0595107	0.00183852
chr7	127922173	127922273	3405119	0	+	0.38	(0.378,0.408]	chr7	318161	170	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000465900.5:ENST00000486037.1:ENST00000484767.5:ENST00000492840.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	75	2	2.46509	2.4912099999999997	2.51733	0.00808319	0.00287152	0.0766625	0.0494641
chr7	135632467	135632567	3429102	0	+	0.49	(0.476,0.515]	chr7	319814	16	INTRON	INTRON	NUP205	ENSG00000155561.15	ENST00000285968.11:ENST00000607647.5:ENST00000477620.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	157	2	2.13632	2.4912	2.84608	6.05245e-4	5.98603e-4	0.0226059	0.0222977
chr1	88724898	88724998	156175	0	+	0.53	(0.515,0.57]	chr1	17045	399	INTRON	INTRON	PKN2	ENSG00000065243.20	ENST00000316005.11:ENST00000370521.8:ENST00000370513.9	protein_coding	protein_coding	protein_coding	protein_coding	3	39	2	2.15051	2.4911950000000003	2.83188	0.0238113	0.0108207	0.118889	0.0920575
chr4	455309	455409	2092732	0	-	0.56	(0.515,0.57]	chr4	206783	105	INTRON	INTRON	ABCA11P:ZNF721	ENSG00000251595.7:ENSG00000182903.16	ENST00000451020.6:ENST00000514396.5:ENST00000507854.1:ENST00000515578.5:ENST00000506646.5:ENST00000507078.1:ENST00000511833.3:ENST00000338977.5:ENST00000505900.1	protein_coding	protein_coding	protein_coding:transcribed_processed_pseudogene	protein_coding:nonsense_mediated_decay:processed_transcript	3	39	2	2.15051	2.4911950000000003	2.83188	0.0238113	0.0108207	0.118889	0.0920575
chr10	67885499	67885599	4440407	0	+	0.41	(0.408,0.44]	chr10	409421	1	SS5_PROX	SS5_PROX:INTRON	SIRT1	ENSG00000096717.12	ENST00000212015.11:ENST00000432464.5:ENST00000497639.5:ENST00000473922.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	131	2	1.68814	2.491175	3.29421	0.0135006	3.47956e-5	0.0949306	0.00469546
chr2	31993090	31993190	1090942	0	-	0.49	(0.476,0.515]	chr2	116913	299	INTRON	INTRON	MEMO1:DPY30	ENSG00000162959.14:ENSG00000162961.14	ENST00000295065.9:ENST00000446765.5:ENST00000404530.6:ENST00000490459.5:ENST00000426310.6:ENST00000413686.1:ENST00000407893.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	34	2	2.28264	2.491155	2.69967	0.0534132	0.0195838	0.179876	0.109483
chr6	170662412	170662512	3038077	0	+	0.48	(0.476,0.515]	chr6	283181	238	INTRON	INTRON	ENSG00000230423	ENSG00000230423.3	ENST00000656791.1:ENST00000426839.2	lncRNA	lncRNA	lncRNA	lncRNA	2	34	2	2.28264	2.491155	2.69967	0.0534132	0.0195838	0.179876	0.109483
chr1	230127326	230127426	334680	0	+	0.36	(0.35,0.378]	chr1	38930	354	INTRON	INTRON	GALNT2	ENSG00000143641.10	ENST00000494106.1:ENST00000366672.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	59	2	1.76773	2.491145	3.21456	0.0373863	0.00420814	0.155878	0.0572185
chr7	155777137	155777236	3453247	0	+	0.414141	(0.408,0.44]	chr7	322755	21	UTR3	UTR3:EXON_MRNA	RBM33	ENSG00000184863.11	ENST00000401878.8:ENST00000341148.7	protein_coding	protein_coding	protein_coding	protein_coding	17	235	2	2.3998	2.4911399999999997	2.58248	3.78714e-4	4.9625e-5	0.018083	0.00577648
chr18	3448697	3448797	6867083	0	+	0.46	(0.44,0.476]	chr18	680316	1	SS5_PROX	SS5_PROX:INTRON	TGIF1	ENSG00000177426.22	ENST00000552383.5:ENST00000401449.5:ENST00000550958.5:ENST00000548489.6:ENST00000618001.4:ENST00000549780.5	protein_coding	protein_coding	protein_coding	protein_coding	5	73	2	1.85904	2.49101	3.12298	0.029889	4.66209e-4	0.129138	0.0195589
chr5	53946718	53946818	2617271	0	-	0.46	(0.44,0.476]	chr5	248835	347	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	73	2	1.85904	2.49101	3.12298	0.029889	4.66209e-4	0.129138	0.0195589
chr8	140692613	140692713	4076933	0	-	0.34	(0.32,0.35]	chr8	370348	51	INTRON	INTRON	PTK2	ENSG00000169398.20	ENST00000696786.1:ENST00000522684.5:ENST00000395218.3:ENST00000519654.5:ENST00000521059.5:ENST00000517887.5:ENST00000519465.5:ENST00000519993.5:ENST00000340930.7:ENST00000523539.5:ENST00000519419.5:ENST00000524202.5:ENST00000430260.6:ENST00000521986.5:ENST00000521985.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	53	2	2.1362	2.490945	2.84569	0.0291083	0.0121137	0.128029	0.0962599
chr7	121285177	121285277	3396629	0	+	0.59	(0.57,1]	chr7	317818	134	INTRON	INTRON	CPED1	ENSG00000106034.18	ENST00000310396.10	protein_coding	protein_coding	protein_coding	protein_coding	4	34	2	2.05026	2.49088	2.9315	0.0321326	9.1984e-4	0.145026	0.0278396
chr16	11759945	11760041	6445305	0	-	0.447917	(0.44,0.476]	chr16	620869	2	INTRON	INTRON	ZC3H7A	ENSG00000122299.12	ENST00000396516.6:ENST00000571405.5:ENST00000355758.9:ENST00000570862.1:ENST00000571198.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	62	2	1.54868	2.4908650000000003	3.43305	0.0457575	0.00159668	0.164677	0.0364566
chr2	235608118	235608218	1042478	0	+	0.54	(0.515,0.57]	chr2	111222	832	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1:ENST00000402604.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	96	2	1.97876	2.490855	3.00295	0.00610685	2.06595e-4	0.0706941	0.0131276
chr3	38180507	38180607	1398694	0	+	0.41	(0.408,0.44]	chr3	146661	142	INTRON	INTRON	OXSR1	ENSG00000172939.9	ENST00000492714.1:ENST00000446845.5:ENST00000311806.8:ENST00000426620.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	54	2	2.08376	2.490855	2.89795	0.0129886	0.0110735	0.0991656	0.0873897
chr15	55255825	55255925	6180562	0	-	0.46	(0.44,0.476]	chr15	589154	69	INTRON	INTRON	RAB27A	ENSG00000069974.16	ENST00000336787.6:ENST00000396307.6:ENST00000564609.5:ENST00000569493.5:ENST00000567380.5:ENST00000565972.5:ENST00000563262.5:ENST00000568803.1:ENST00000567639.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	45	2	2.44514	2.49077	2.5364	0.0309324	0.0087381	0.13151	0.0845538
chr19	10665891	10665991	7013328	0	+	0.47	(0.44,0.476]	chr19	696757	100	INTRON	INTRON	ILF3	ENSG00000129351.17	ENST00000449870.5:ENST00000587928.5:ENST00000407004.7:ENST00000589998.5:ENST00000589600.5:ENST00000589283.5:ENST00000590009.5:ENST00000593199.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	45	2	2.44514	2.49077	2.5364	0.0309324	0.0087381	0.13151	0.0845538
chr19	34459024	34459124	7053439	0	+	0.47	(0.44,0.476]	chr19	703557	1	SS5_PROX	SS5_PROX:INTRON	UBA2	ENSG00000126261.13	ENST00000586313.1:ENST00000246548.9:ENST00000439527.6:ENST00000591016.1:ENST00000592791.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	45	2	2.44514	2.49077	2.5364	0.0309324	0.0087381	0.13151	0.0845538
chr7	111273296	111273396	3621215	0	-	0.47	(0.44,0.476]	chr7	337093	3094	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	45	2	2.44514	2.49077	2.5364	0.0309324	0.0087381	0.13151	0.0845538
chr10	24651493	24651593	4581220	0	-	0.39	(0.378,0.408]	chr10	422181	160	INTRON	INTRON	ARHGAP21	ENSG00000107863.20	ENST00000612832.4:ENST00000396432.7:ENST00000680286.1:ENST00000376410.7:ENST00000446003.5:ENST00000476499.1:ENST00000416305.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	63	2	2.11194	2.490745	2.86955	0.0292534	0.00159247	0.128055	0.0367961
chr11	118443175	118443274	4872186	0	+	0.424242	(0.408,0.44]	chr11	454982	37	INTRON	INTRON	ENSG00000285827:KMT2A	ENSG00000285827.1:ENSG00000118058.24	ENST00000649464.1:ENST00000648261.1:ENST00000529852.3:ENST00000649666.2:ENST00000389506.10:ENST00000534358.8:ENST00000533790.3:ENST00000527869.7:ENST00000649690.2:ENST00000532204.6:ENST00000691053.1:ENST00000531904.6:ENST00000649699.1:ENST00000648029.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	47	2	2.31565	2.49072	2.66579	0.019342	0.0154718	0.119831	0.100909
chr17	35817317	35817417	6601163	0	+	0.36	(0.35,0.378]	chr17	642406	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TAF15	ENSG00000270647.7	ENST00000605844.6:ENST00000603777.6:ENST00000604694.2:ENST00000689923.1:ENST00000603393.6:ENST00000685897.1:ENST00000603427.6:ENST00000604879.6:ENST00000605649.6:ENST00000604360.6:ENST00000604841.5:ENST00000605197.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	49	2	1.81767	2.49069	3.16371	0.0640429	0.00383956	0.177882	0.0562562
chr10	42350640	42350740	4603280	0	-	0.36	(0.35,0.378]	chr10	424077	97	INTRON	INTRON	ENSG00000215146	ENSG00000215146.5	ENST00000609841.1:ENST00000650175.1:ENST00000423987.2:ENST00000609034.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	4	68	2	2.41088	2.490685	2.57049	0.0262669	0.0047981	0.133676	0.0602209
chr5	6625969	6626069	2566707	0	-	0.35	(0.32,0.35]	chr5	245963	3	SS3_PROX	SS3_PROX:INTRON	NSUN2	ENSG00000037474.15	ENST00000264670.11:ENST00000504374.5:ENST00000506139.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	85	2	2.22655	2.49059	2.75463	0.00823133	0.00387748	0.0812969	0.0543578
chr9	123213908	123214007	4339933	0	-	0.353535	(0.35,0.378]	chr9	398957	1	INTRON	INTRON	STRBP	ENSG00000165209.19	ENST00000348403.10:ENST00000360998.3:ENST00000407982.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	95	2	2.23309	2.4905799999999996	2.74807	0.00930277	8.09805e-4	0.0817766	0.0259453
chr2	53915382	53915481	1119997	0	-	0.454545	(0.44,0.476]	chr2	119993	49	INTRON	INTRON	PSME4	ENSG00000068878.15	ENST00000404125.6:ENST00000389993.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	46	2	2.38219	2.490535	2.59888	0.045456	0.00487719	0.149888	0.0640618
chr9	15494913	15495012	4235922	0	-	0.363636	(0.35,0.378]	chr9	389324	23	INTRON	INTRON	PSIP1	ENSG00000164985.15	ENST00000380738.8:ENST00000380733.9:ENST00000380716.8:ENST00000380715.5:ENST00000397519.6:ENST00000487363.5:ENST00000463712.6:ENST00000488797.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	49	2	1.98929	2.49051	2.99173	0.0417909	0.00713365	0.147075	0.0756118
chr6	44137695	44137789	2872437	0	+	0.5	(0.476,0.515]	chr6	272407	9	INTRON	INTRON	TMEM63B	ENSG00000137216.19	ENST00000259746.13:ENST00000323267.11:ENST00000532634.5:ENST00000534326.5:ENST00000525294.5:ENST00000371893.6:ENST00000497371.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	152	2	2.47132	2.49045	2.50958	6.83662e-4	3.53487e-4	0.0239468	0.016825
chr1	145780139	145780239	540215	0	-	0.54	(0.515,0.57]	chr1	63364	64	INTRON	INTRON	RNF115	ENSG00000265491.5	ENST00000582693.5	protein_coding	protein_coding	protein_coding	protein_coding	3	39	2	2.45585	2.4904450000000002	2.52504	0.029342	0.00797827	0.128055	0.0798772
chr13	41323590	41323690	5474342	0	+	0.56	(0.515,0.57]	chr13	524452	4	SS5_PROX	SS5_PROX:INTRON	NAA16	ENSG00000172766.19	ENST00000379406.8:ENST00000403412.7:ENST00000476980.5:ENST00000464857.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	39	2	2.45585	2.4904450000000002	2.52504	0.029342	0.00797827	0.128055	0.0798772
chr16	88878769	88878869	6540300	0	-	0.53	(0.515,0.57]	chr16	634032	1	SS5_PROX	SS5_PROX:INTRON	CBFA2T3	ENSG00000129993.15	ENST00000268679.9:ENST00000327483.9:ENST00000563856.1:ENST00000563920.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	59	2	1.44237	2.490405	3.53844	0.0456196	7.92613e-4	0.164236	0.0259663
chr13	79396804	79396904	5626315	0	-	0.34	(0.32,0.35]	chr13	536667	175	INTRON	INTRON	RBM26	ENSG00000139746.16	ENST00000438737.3:ENST00000438724.5:ENST00000622611.4:ENST00000267229.11:ENST00000472143.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	131	2	2.41492	2.49037	2.56582	0.00513727	4.56098e-4	0.062965	0.0192963
chr5	32428377	32428477	2599165	0	-	0.46	(0.44,0.476]	chr5	246966	79	INTRON	INTRON	ZFR	ENSG00000056097.16	ENST00000265069.13:ENST00000505366.1:ENST00000505204.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	45	2	2.00609	2.4903	2.97451	0.0360127	0.00853825	0.152355	0.0780043
chr1	23331918	23332018	399464	0	-	0.56	(0.515,0.57]	chr1	47865	78	INTRON	INTRON	HNRNPR	ENSG00000125944.21	ENST00000478691.5:ENST00000302271.11:ENST00000374616.7:ENST00000374612.5:ENST00000675048.1:ENST00000606561.5:ENST00000427764.3:ENST00000463552.5:ENST00000470941.5:ENST00000476451.2	protein_coding	protein_coding	protein_coding	protein_coding	16	164	2	1.77892	2.490235	3.20155	0.00246297	2.00085e-5	0.0459102	0.00362289
chr1	150929366	150929466	223384	0	+	0.42	(0.408,0.44]	chr1	25355	10	INTRON	INTRON	SETDB1	ENSG00000143379.13	ENST00000487584.6:ENST00000525956.5:ENST00000692314.1:ENST00000690229.1:ENST00000271640.9:ENST00000448029.5:ENST00000368962.6:ENST00000692827.1:ENST00000534805.5:ENST00000368969.8:ENST00000459773.1:ENST00000368963.5:ENST00000498193.5:ENST00000368964.3:ENST00000423081.1:ENST00000481219.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	84	2	2.4473	2.490215	2.53313	0.00739595	0.0013419	0.074277	0.0336974
chr2	75945168	75945268	817611	0	+	0.42	(0.408,0.44]	chr2	91391	723	INTRON	INTRON	ENSG00000287474	ENSG00000287474.1	ENST00000670606.1	lncRNA	lncRNA	lncRNA	lncRNA	7	93	2	1.85866	2.4901850000000003	3.12171	0.0106944	6.63666e-4	0.091856	0.0234815
chr12	122565876	122565975	5240987	0	+	0.212121	[0,0.28]	chr12	497679	28	INTRON	INTRON	KNTC1	ENSG00000184445.12	ENST00000450485.6:ENST00000333479.12	protein_coding	protein_coding	protein_coding	protein_coding	5	110	2	1.99345	2.49014	2.98683	0.0211881	0.00234564	0.123133	0.0434875
chr1	47217563	47217661	445295	0	-	0.438776	(0.408,0.44]	chr1	53935	14	UTR3	UTR3:EXON_MRNA	TAL1	ENSG00000162367.12	ENST00000371884.6:ENST00000691006.1:ENST00000294339.3	protein_coding	protein_coding	protein_coding	protein_coding	5	73	2	2.40661	2.49013	2.57365	0.011475	0.00172241	0.0888882	0.0383099
chr8	140748438	140748536	4077513	0	-	0.479592	(0.476,0.515]	chr8	370415	12	INTRON	INTRON	PTK2	ENSG00000169398.20	ENST00000696786.1:ENST00000522684.5:ENST00000395218.3:ENST00000519654.5:ENST00000521059.5:ENST00000517887.5:ENST00000519465.5:ENST00000519993.5:ENST00000340930.7:ENST00000523539.5:ENST00000519419.5:ENST00000524202.5:ENST00000521986.5:ENST00000521250.5:ENST00000521981.5:ENST00000521029.5:ENST00000520151.5:ENST00000523670.5:ENST00000519024.5:ENST00000523746.5:ENST00000523474.5:ENST00000519899.5:ENST00000519361.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	69	2	1.486	2.490055	3.49411	0.0430512	9.23453e-4	0.148082	0.0278392
chr11	130141132	130141223	4886449	0	+	0.615385	(0.57,1]	chr11	457017	8	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	APLP2	ENSG00000084234.18	ENST00000650012.1:ENST00000533616.5:ENST00000338167.10:ENST00000528499.5:ENST00000263574.9:ENST00000345598.9:ENST00000278756.7:ENST00000533860.5:ENST00000530493.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	44	2	1.49662	2.489995	3.48337	0.0229916	6.20854e-4	0.118056	0.0223951
chr20	5582107	5582205	7312050	0	-	0.561224	(0.515,0.57]	chr20	744590	16	INTRON	INTRON	GPCPD1	ENSG00000125772.14	ENST00000379019.7:ENST00000481038.5:ENST00000481690.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	39	2	1.94945	2.48991	3.03037	0.0414068	0.00608732	0.161557	0.0676501
chr3	138832497	138832597	1831478	0	-	0.57	(0.515,0.57]	chr3	184062	356	INTRON	INTRON	PIK3CB	ENSG00000051382.9	ENST00000674063.1:ENST00000477593.5:ENST00000462898.5:ENST00000483968.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	39	2	1.94945	2.48991	3.03037	0.0414068	0.00608732	0.161557	0.0676501
chr20	17946306	17946403	7320327	0	-	0.443299	(0.44,0.476]	chr20	745270	9	INTRON	INTRON	SNX5	ENSG00000089006.17	ENST00000377768.7:ENST00000490175.5:ENST00000483485.5:ENST00000377759.9:ENST00000491090.5:ENST00000476648.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	110	2	2.36073	2.489845	2.61896	0.0017827	0.00108744	0.0379201	0.0301337
chr6	35884924	35885024	3088455	0	-	0.35	(0.32,0.35]	chr6	288860	102	INTRON	INTRON	SRPK1	ENSG00000096063.16	ENST00000373825.7:ENST00000423325.6:ENST00000346162.10:ENST00000361690.7:ENST00000510290.5:ENST00000373821.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	97	2	1.80306	2.48984	3.1766200000000002	0.0246393	4.35341e-4	0.12011	0.0187673
chr17	81563568	81563656	6848841	0	-	0.409091	(0.408,0.44]	chr17	678119	1	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:SS5_PROX:INTRON	NPLOC4	ENSG00000182446.14	ENST00000331134.11:ENST00000572760.5:ENST00000572346.5:ENST00000573519.5:ENST00000573876.1:ENST00000571714.5:ENST00000572824.1:ENST00000573212.5:ENST00000576713.6:ENST00000374747.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	12	169	2	2.15055	2.4897799999999997	2.82901	0.00257687	3.9329e-5	0.0451926	0.00508236
chr3	179256268	179256367	1878220	0	-	0.474747	(0.44,0.476]	chr3	187618	48	INTRON	INTRON	KCNMB3	ENSG00000171121.17	ENST00000485523.5:ENST00000497599.5:ENST00000392686.6:ENST00000349697.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	46	2	1.85146	2.489725	3.12799	0.0545846	0.0050635	0.182529	0.0621733
chr20	56404605	56404702	7287431	0	+	0.350515	(0.35,0.378]	chr20	741418	10	UTR3	UTR3:EXON_MRNA	CSTF1	ENSG00000101138.12	ENST00000217109.9	protein_coding	protein_coding	protein_coding	protein_coding	5	79	2	2.10109	2.48972	2.87835	0.014685	0.00160563	0.0983813	0.0367961
chr1	167942334	167942433	248545	0	+	0.393939	(0.378,0.408]	chr1	29536	47	INTRON	INTRON	DCAF6	ENSG00000143164.16	ENST00000450548.5:ENST00000470919.5:ENST00000432587.6:ENST00000367843.7:ENST00000470721.5:ENST00000367840.4:ENST00000312263.10:ENST00000455334.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	66	2	2.18994	2.4897	2.78946	0.0158859	0.00448961	0.101453	0.0612035
chr4	78788103	78788203	1981502	0	+	0.38	(0.378,0.408]	chr4	198463	110	INTRON	INTRON	BMP2K	ENSG00000138756.19	ENST00000389010.7:ENST00000502613.3:ENST00000502871.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	133	2	2.38009	2.48964	2.59919	0.00145972	6.41208e-4	0.0345816	0.0228915
chr1	35435797	35435897	420637	0	-	0.49	(0.476,0.515]	chr1	50703	2	SS3_PROX	SS3_PROX:INTRON	KIAA0319L	ENSG00000142687.18	ENST00000325722.8:ENST00000373266.8:ENST00000426982.6:ENST00000461312.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	91	2	1.97876	2.489555	3.00035	0.00655939	0.00109036	0.0735539	0.0303873
chr12	111571975	111572075	5412959	0	-	0.34	(0.32,0.35]	chr12	516941	72	INTRON	INTRON	ATXN2	ENSG00000204842.18	ENST00000642389.2:ENST00000608853.5:ENST00000672613.1:ENST00000673436.1:ENST00000643669.2:ENST00000616825.4:ENST00000389153.10:ENST00000550104.5:ENST00000483311.6:ENST00000672335.1:ENST00000673557.1:ENST00000673283.1:ENST00000673449.1:ENST00000535949.5:ENST00000542287.6:ENST00000644883.1:ENST00000647305.1:ENST00000671792.1:ENST00000392645.6:ENST00000672105.1:ENST00000549455.1:ENST00000548492.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	97	2	2.3805	2.489525	2.59855	0.00682041	0.0021364	0.0712518	0.0428801
chr18	2710009	2710108	6865429	0	+	0.282828	(0.28,0.32]	chr18	680035	17	INTRON	INTRON	SMCHD1	ENSG00000101596.17	ENST00000320876.11:ENST00000688342.1:ENST00000693213.1:ENST00000577880.5:ENST00000584897.5:ENST00000581711.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	97	2	1.85559	2.489455	3.12332	0.00894463	0.00698537	0.0849778	0.0718189
chr1	21758782	21758882	396626	0	-	0.34	(0.32,0.35]	chr1	47345	6	INTRON	INTRON	USP48	ENSG00000090686.16	ENST00000400301.5:ENST00000308271.14:ENST00000529637.5:ENST00000421625.6:ENST00000527823.5:ENST00000532737.1:ENST00000489108.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	65	2	2.40617	2.4894	2.57263	0.0312297	0.0040507	0.13151	0.0578376
chr7	4691463	4691563	3270007	0	+	0.51	(0.476,0.515]	chr7	303884	82	INTRON	INTRON	FOXK1	ENSG00000164916.11	ENST00000328914.5	protein_coding	protein_coding	protein_coding	protein_coding	5	72	2	2.21025	2.4894	2.76855	0.00913757	0.00244302	0.0812335	0.0456956
chr12	111439090	111439189	5227921	0	+	0.434343	(0.408,0.44]	chr12	495500	37	INTRON	INTRON	SH2B3	ENSG00000111252.11	ENST00000341259.7:ENST00000550925.2:ENST00000538307.1	protein_coding	protein_coding	protein_coding	protein_coding	5	64	2	1.7743	2.489335	3.20437	0.0244755	0.00306596	0.12011	0.0509893
chr12	132760120	132760220	5449564	0	-	0.39	(0.378,0.408]	chr12	521956	51	EXON_MRNA	EXON_MRNA:INTRON	ANKLE2	ENSG00000176915.15	ENST00000357997.10:ENST00000539605.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	105	2	2.37499	2.4893099999999997	2.60363	0.00259953	0.00153353	0.0454353	0.0361717
chr14	73119805	73119904	5784717	0	+	0.30303	(0.28,0.32]	chr14	547921	1	UTR3	UTR3:EXON_MRNA	RBM25	ENSG00000119707.14	ENST00000527432.5:ENST00000261973.12:ENST00000532683.5:ENST00000528081.5:ENST00000527449.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	117	2	2.03307	2.48921	2.94535	0.0062039	0.00213731	0.0716199	0.0417866
chr1	65284493	65284592	135838	0	+	0.535354	(0.515,0.57]	chr1	15346	192	INTRON	INTRON	DNAJC6	ENSG00000116675.16	ENST00000463018.5:ENST00000494710.6:ENST00000263441.11:ENST00000395325.7:ENST00000483402.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	65	2	1.88259	2.489195	3.0958	0.0251849	5.63557e-4	0.133519	0.0219303
chr17	78824479	78824579	6846234	0	-	0.5	(0.476,0.515]	chr17	677447	9	INTRON	INTRON	USP36	ENSG00000055483.20	ENST00000589225.5:ENST00000592231.6:ENST00000449938.7:ENST00000542802.7:ENST00000693020.1:ENST00000312010.10:ENST00000588086.6:ENST00000586066.3:ENST00000589424.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	82	2	2.2792	2.4890299999999996	2.69886	0.00385209	0.00299196	0.0542786	0.0503888
chr11	68487576	68487676	4817601	0	+	0.19	[0,0.28]	chr11	448907	264	INTRON	INTRON	PPP6R3	ENSG00000110075.15	ENST00000530427.5:ENST00000528635.5:ENST00000529907.5:ENST00000533127.5:ENST00000534534.5:ENST00000529344.5:ENST00000524845.5:ENST00000393800.7:ENST00000265637.8:ENST00000524904.5:ENST00000393801.7:ENST00000265636.9:ENST00000529710.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	64	2	2.28885	2.489015	2.68918	0.0275571	0.0181093	0.123904	0.114853
chr5	146211404	146211503	2514192	0	+	0.212121	[0,0.28]	chr5	240152	72	INTRON	INTRON	ENSG00000275740:RBM27	ENSG00000275740.1:ENSG00000091009.8	ENST00000506502.2:ENST00000265271.7	protein_coding	protein_coding	protein_coding	protein_coding	3	64	2	2.28885	2.489015	2.68918	0.0275571	0.0181093	0.123904	0.114853
chr4	94493264	94493364	1998798	0	+	0.35	(0.32,0.35]	chr4	199554	38	INTRON	INTRON	PDLIM5	ENSG00000163110.15	ENST00000437932.5:ENST00000615540.4:ENST00000318007.9:ENST00000380180.7:ENST00000514830.5:ENST00000509333.5:ENST00000503974.5:ENST00000317968.9:ENST00000627587.2:ENST00000542407.5:ENST00000514743.5:ENST00000508216.5:ENST00000511767.3:ENST00000510099.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	52	2	2.4053	2.4889650000000003	2.57263	0.0312297	0.0108284	0.13151	0.0920575
chr1	8781312	8781412	373421	0	-	0.46	(0.44,0.476]	chr1	43549	276	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000656437.1:ENST00000659924.1	protein_coding	protein_coding	protein_coding	protein_coding	5	73	2	2.12992	2.4889599999999996	2.848	0.010975	0.00215274	0.092635	0.0417866
chr18	46919273	46919368	6966767	0	-	0.536842	(0.515,0.57]	chr18	689560	14	INTRON	INTRON	PIAS2	ENSG00000078043.16	ENST00000592011.5:ENST00000589917.1:ENST00000587810.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	67	2	2.36888	2.4889349999999997	2.60899	0.0232669	9.15531e-4	0.118148	0.027822
chr7	127972378	127972478	3405625	0	+	0.45	(0.44,0.476]	chr7	318177	228	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000486037.1:ENST00000484767.5:ENST00000492840.1:ENST00000470723.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	68	2	1.66775	2.48893	3.31011	0.0219883	0.00259023	0.123836	0.0452934
chr21	39346439	39346535	7465678	0	-	0.239583	[0,0.28]	chr21	760601	6	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	HMGN1	ENSG00000205581.11	ENST00000492280.5:ENST00000431390.5:ENST00000486741.5:ENST00000380749.10:ENST00000288344.14:ENST00000652622.1:ENST00000436324.5:ENST00000380748.5:ENST00000419378.5:ENST00000489072.5:ENST00000482192.5:ENST00000380747.5:ENST00000485550.5:ENST00000490032.5:ENST00000443046.5:ENST00000464078.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	139	2	1.28404	2.4888149999999998	3.69359	0.04021	0.00122246	0.161534	0.0320622
chr5	53946418	53946518	2617268	0	-	0.34	(0.32,0.35]	chr5	248835	344	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	194	2	2.36083	2.48873	2.61663	6.0935e-4	5.29833e-4	0.0226786	0.0207315
chr8	25454520	25454619	3926312	0	-	0.333333	(0.32,0.35]	chr8	359463	26	INTRON	INTRON	KCTD9	ENSG00000104756.16	ENST00000221200.9:ENST00000519665.5:ENST00000523140.5:ENST00000522493.5:ENST00000518067.5:ENST00000518997.5:ENST00000523294.5:ENST00000521458.5:ENST00000524217.1:ENST00000517914.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	54	2	2.30673	2.488705	2.67068	0.0584434	0.00406276	0.167723	0.0578984
chr16	70524488	70524549	6385139	0	+	0.377049	(0.35,0.378]	chr16	613855	2	SS3_PROX	SS3_PROX:SS5_PROX:INTRON	SF3B3	ENSG00000189091.13	ENST00000566095.6:ENST00000577085.1:ENST00000302516.10:ENST00000567654.1	protein_coding	protein_coding	protein_coding	protein_coding	6	102	2	2.11531	2.48868	2.86205	0.0119629	7.01936e-4	0.0962115	0.024224
chr1	54400161	54400261	463699	0	-	0.37	(0.35,0.378]	chr1	55784	435	INTRON	INTRON	SSBP3	ENSG00000157216.16	ENST00000610401.5:ENST00000357475.9:ENST00000371319.8:ENST00000417664.7:ENST00000533946.6:ENST00000371320.8:ENST00000525990.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	59	2	1.6122	2.48867	3.36514	0.0616849	0.00173699	0.174021	0.03851
chr12	6497923	6498023	5069258	0	+	0.47	(0.44,0.476]	chr12	478656	23	INTRON	INTRON	NCAPD2	ENSG00000010292.13	ENST00000541399.1:ENST00000539714.5:ENST00000382457.8:ENST00000539084.5:ENST00000315579.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	11	149	2	1.77947	2.488665	3.19786	0.00926895	1.82961e-5	0.0817766	0.00327543
chr4	1994509	1994608	2095905	0	-	0.525253	(0.515,0.57]	chr4	207403	20	INTRON	INTRON	NELFA	ENSG00000185049.16	ENST00000542778.5:ENST00000382882.9:ENST00000333877.8:ENST00000431323.6:ENST00000455762.5:ENST00000421397.5:ENST00000411649.3:ENST00000443203.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	62	2	1.97035	2.48864	3.00693	0.0195832	7.26845e-4	0.109483	0.0245647
chr7	64921587	64921687	3321274	0	+	0.34	(0.32,0.35]	chr7	308796	29	INTRON	INTRON	ZNF273	ENSG00000198039.12	ENST00000527278.5:ENST00000489672.5:ENST00000476120.2:ENST00000395375.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	52	2	2.07985	2.48864	2.89743	0.0303092	0.0127608	0.143025	0.0926667
chr1	26927364	26927464	52813	0	+	0.42	(0.408,0.44]	chr1	6762	28	INTRON	INTRON	NUDC	ENSG00000090273.14	ENST00000435827.6:ENST00000321265.10:ENST00000452707.1	protein_coding	protein_coding	protein_coding	protein_coding	3	45	2	2.07919	2.48857	2.89795	0.0291499	0.0110735	0.14147	0.0873897
chr1	52351882	52351981	456558	0	-	0.414141	(0.408,0.44]	chr1	54728	14	UTR3	UTR3:EXON_MRNA:INTRON	CC2D1B	ENSG00000154222.15	ENST00000470844.5:ENST00000371586.6:ENST00000284376.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	45	2	2.07919	2.48857	2.89795	0.0291499	0.0110735	0.14147	0.0873897
chr5	179772034	179772131	2561439	0	+	0.412371	(0.408,0.44]	chr5	244983	4	INTRON	INTRON	MAML1	ENSG00000161021.13	ENST00000292599.4:ENST00000507385.1:ENST00000511027.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	45	2	2.07919	2.48857	2.89795	0.0291499	0.0110735	0.14147	0.0873897
chr5	143362010	143362110	2742113	0	-	0.3	(0.28,0.32]	chr5	258577	475	INTRON	INTRON	NR3C1	ENSG00000113580.15	ENST00000343796.6:ENST00000394464.7:ENST00000415690.6:ENST00000424646.6:ENST00000504572.5:ENST00000394466.6:ENST00000231509.7:ENST00000652686.1:ENST00000503201.1:ENST00000504336.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	43	2	2.29724	2.488495	2.67975	0.0554156	0.0252505	0.18407	0.12011
chr6	140636179	140636279	2972821	0	+	0.32	(0.28,0.32]	chr6	279037	255	INTRON	INTRON	ENSG00000288714	ENSG00000288714.1	ENST00000684511.1	lncRNA	lncRNA	lncRNA	lncRNA	2	43	2	2.29724	2.488495	2.67975	0.0554156	0.0252505	0.18407	0.12011
chr2	167902778	167902878	1258830	0	-	0.56	(0.515,0.57]	chr2	133340	16	INTRON	INTRON	B3GALT1-AS1	ENSG00000235335.3	ENST00000430546.2:ENST00000657553.1:ENST00000670221.1:ENST00000436982.2	lncRNA	lncRNA	lncRNA	lncRNA	5	62	2	2.24433	2.488455	2.73258	0.00725078	0.00260192	0.072984	0.0470772
chr15	92961844	92961943	6104332	0	+	0.353535	(0.35,0.378]	chr15	581492	48	INTRON	INTRON	CHD2	ENSG00000173575.22	ENST00000626874.2:ENST00000394196.9:ENST00000635856.1:ENST00000625990.3:ENST00000637572.1:ENST00000636881.1:ENST00000628181.1:ENST00000627200.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	67	2	1.64283	2.48843	3.33403	0.034896	0.00272701	0.148998	0.0467523
chr17	57992570	57992669	6799902	0	-	0.414141	(0.408,0.44]	chr17	671422	29	EXON_LNCRNA	EXON_LNCRNA:INTRON	ENSG00000266086:ENSG00000264112	ENSG00000266086.3:ENSG00000264112.1	ENST00000578794.2:ENST00000665125.1:ENST00000577267.1:ENST00000585065.1	protein_coding	nonsense_mediated_decay	protein_coding:lncRNA	nonsense_mediated_decay:lncRNA:processed_transcript	7	92	2	2.02591	2.488395	2.95088	0.00531945	0.00142252	0.0660391	0.0340865
chr17	37354921	37355021	6762531	0	-	0.42	(0.408,0.44]	chr17	664970	92	INTRON	INTRON	ACACA	ENSG00000278540.5	ENST00000616317.5:ENST00000614428.4:ENST00000613146.4:ENST00000615229.4:ENST00000621960.1:ENST00000617548.1:ENST00000616352.4:ENST00000614789.4:ENST00000612007.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:non_stop_decay:nonsense_mediated_decay	4	57	2	2.08486	2.4883949999999997	2.89193	0.0145898	0.00950364	0.0981689	0.0863579
chr4	139125729	139125829	2246830	0	-	0.38	(0.378,0.408]	chr4	219588	4	SS3_PROX	SS3_PROX:INTRON	ELF2	ENSG00000109381.21	ENST00000394235.6:ENST00000686138.1:ENST00000379550.5:ENST00000511184.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	83	2	2.07507	2.488345	2.90162	0.0113157	0.00284959	0.0886121	0.0494641
chr16	71923935	71923990	6386909	0	+	0.4	(0.378,0.408]	chr16	614130	2	SS3_PROX	SS3_PROX:INTRON	IST1	ENSG00000182149.21	ENST00000544564.5:ENST00000541571.6:ENST00000535424.5:ENST00000606369.5:ENST00000378799.11:ENST00000538565.5:ENST00000329908.12:ENST00000538850.5:ENST00000378798.9:ENST00000439924.6:ENST00000456820.2:ENST00000536027.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	77	2	2.2467	2.488315	2.72993	0.0188736	0.00196896	0.108861	0.0411469
chr5	139562807	139562907	2500518	0	+	0.39	(0.378,0.408]	chr5	239025	4	SS5_PROX	SS5_PROX:INTRON	UBE2D2	ENSG00000131508.16	ENST00000511725.5:ENST00000505007.5:ENST00000398733.8:ENST00000510470.1:ENST00000398734.8:ENST00000505548.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	64	2	1.6165	2.4882400000000002	3.35998	0.0374185	0.00230615	0.155878	0.0428247
chr12	56643178	56643240	5335784	0	-	0.370968	(0.35,0.378]	chr12	510129	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ATP5F1B	ENSG00000110955.9	ENST00000262030.8:ENST00000548474.2:ENST00000547808.5:ENST00000547250.5:ENST00000551020.5:ENST00000552959.5:ENST00000551570.5:ENST00000553007.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	144	2	2.24466	2.48815	2.73164	0.00387645	4.6808e-4	0.0543578	0.0196039
chr17	75385189	75385289	6837593	0	-	0.49	(0.476,0.515]	chr17	675716	520	INTRON	INTRON	GRB2	ENSG00000177885.15	ENST00000316615.9:ENST00000316804.10:ENST00000392562.5:ENST00000392564.5:ENST00000392563.5:ENST00000648046.1:ENST00000578961.5:ENST00000582582.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	62	2	1.48023	2.48805	3.49587	0.0559072	0.00120011	0.18407	0.0315806
chr3	128648355	128648454	1813988	0	-	0.494949	(0.476,0.515]	chr3	182332	30	INTRON	INTRON	RPN1	ENSG00000163902.12	ENST00000296255.8:ENST00000497289.5:ENST00000495462.5:ENST00000476931.1:ENST00000497415.1:ENST00000481168.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	62	2	1.48023	2.48805	3.49587	0.0559072	0.00120011	0.18407	0.0315806
chr3	9415832	9415932	1359067	0	+	0.51	(0.476,0.515]	chr3	142658	1	SS5_PROX	SS5_PROX:INTRON	SETD5	ENSG00000168137.20	ENST00000402198.7:ENST00000431285.5:ENST00000683012.1:ENST00000463180.5:ENST00000478475.5:ENST00000415650.5:ENST00000682536.1:ENST00000663774.1:ENST00000665872.1:ENST00000666307.1:ENST00000693430.1:ENST00000691925.1:ENST00000684606.1:ENST00000691175.1:ENST00000688835.1:ENST00000683262.1:ENST00000443339.5:ENST00000406341.5:ENST00000670063.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	16	212	2	2.25101	2.488	2.72499	3.05285e-4	1.25174e-4	0.0155972	0.0100786
chr6	30614248	30614348	3077339	0	-	0.31	(0.28,0.32]	chr6	286289	3	SS5_PROX	SS5_PROX:INTRON	PPP1R10	ENSG00000204569.10	ENST00000376511.7:ENST00000484449.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	79	2	2.28998	2.488	2.68602	0.0166401	0.0055712	0.110511	0.0649112
chr11	85981644	85981744	5013943	0	-	0.34	(0.32,0.35]	chr11	472929	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000530692.5:ENST00000630913.2:ENST00000529760.5:ENST00000528398.5:ENST00000532603.5:ENST00000356360.9:ENST00000529016.5:ENST00000526961.5:ENST00000530542.1:ENST00000534375.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	117	2	2.00211	2.48795	2.97379	0.00445465	0.00164543	0.0610799	0.0369207
chr16	397994	398086	6272027	0	+	0.630435	(0.57,1]	chr16	598470	2	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS3_PROX:SS5_PROX:INTRON	NME4	ENSG00000103202.13	ENST00000397722.5:ENST00000454619.5:ENST00000620944.4:ENST00000621774.4:ENST00000219479.7:ENST00000448828.5:ENST00000444498.5:ENST00000460297.1:ENST00000382940.8:ENST00000433358.5:ENST00000450036.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	47	2	2.1643	2.48793	2.81156	0.00941704	3.95149e-4	0.0861183	0.0185763
chr11	61808289	61808386	4957440	0	-	0.484536	(0.476,0.515]	chr11	465975	12	INTRON	INTRON	FADS1	ENSG00000149485.19	ENST00000350997.12:ENST00000433932.5:ENST00000542506.5:ENST00000496123.6:ENST00000539999.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	56	2	2.09697	2.4878799999999996	2.87879	0.0136924	0.00999149	0.0949306	0.0879541
chr8	99886382	99886482	4002044	0	-	0.35	(0.32,0.35]	chr8	366178	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	COX6C	ENSG00000164919.11	ENST00000522934.5:ENST00000520517.5:ENST00000520468.7:ENST00000297564.6:ENST00000517682.6:ENST00000520271.5:ENST00000524245.5:ENST00000522940.5:ENST00000518171.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	39	2	2.40308	2.487855	2.57263	0.0417732	0.0312297	0.161736	0.13151
chr10	69136542	69136641	4444674	0	+	0.424242	(0.408,0.44]	chr10	410023	31	INTRON	INTRON	VPS26A	ENSG00000122958.15	ENST00000373382.5:ENST00000395098.5:ENST00000489656.5:ENST00000263559.11:ENST00000497564.5:ENST00000490696.5:ENST00000467852.1:ENST00000489794.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	62	2	1.96973	2.48784	3.00595	0.0108773	0.00781452	0.0923273	0.0759016
chr9	131170584	131170683	4216092	0	+	0.30303	(0.28,0.32]	chr9	386613	61	INTRON	INTRON	NUP214	ENSG00000126883.19	ENST00000695497.1:ENST00000695498.1:ENST00000695496.1:ENST00000695495.1:ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000525980.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	88	2	1.39438	2.4876899999999997	3.581	0.0635439	8.63544e-4	0.177272	0.0266494
chr12	103805821	103805921	5401454	0	-	0.38	(0.378,0.408]	chr12	515268	1	SS5_PROX	SS5_PROX:INTRON	NT5DC3	ENSG00000111696.12	ENST00000392876.8	protein_coding	protein_coding	protein_coding	protein_coding	6	86	2	1.82119	2.48767	3.15415	0.0214651	4.11608e-4	0.114274	0.0181365
chrX	132027855	132027955	7723001	0	+	0.49	(0.476,0.515]	chrX	790023	38	INTRON	INTRON	STK26	ENSG00000134602.16	ENST00000354719.10:ENST00000394334.7:ENST00000481105.5:ENST00000394335.6:ENST00000496850.1	protein_coding	protein_coding	protein_coding	protein_coding	6	84	2	2.20678	2.487665	2.76855	0.00484957	0.00244302	0.0605773	0.0456956
chr9	133373538	133373638	4370423	0	-	0.43	(0.408,0.44]	chr9	402198	56	INTRON	INTRON	SURF4	ENSG00000148248.14	ENST00000545297.5:ENST00000613129.4:ENST00000618229.4:ENST00000371989.8:ENST00000485435.6:ENST00000467910.5:ENST00000371991.3:ENST00000371982.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	168	2	2.31964	2.487655	2.65567	7.98147e-4	2.17278e-4	0.0261178	0.0129235
chr10	119043853	119043953	4704532	0	-	0.52	(0.515,0.57]	chr10	433928	4	SS5_PROX	SS5_PROX:INTRON	EIF3A	ENSG00000107581.13	ENST00000369144.8:ENST00000541549.2	protein_coding	protein_coding	protein_coding	protein_coding	4	46	2	1.94493	2.48765	3.03037	0.0204583	0.00608732	0.122204	0.0676501
chr3	153163644	153163743	1537055	0	+	0.282828	(0.28,0.32]	chr3	160077	5	UTR3	UTR3:EXON_MRNA	RAP2B	ENSG00000181467.5	ENST00000323534.5	protein_coding	protein_coding	protein_coding	protein_coding	25	399	2	1.4647	2.48761	3.51052	0.0143358	5.08997e-7	0.0966737	3.81019e-4
chr19	537247	537347	6991774	0	+	0.65	(0.57,1]	chr19	692122	1	SS5_PROX	SS5_PROX:INTRON	CDC34	ENSG00000099804.9	ENST00000215574.9:ENST00000586283.6:ENST00000607527.5:ENST00000606065.3:ENST00000606400.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	33	2	2.02391	2.48757	2.95123	0.0339274	8.39007e-4	0.134508	0.0263691
chr7	11070056	11070156	3283573	0	+	0.35	(0.32,0.35]	chr7	304989	71	INTRON	INTRON	PHF14	ENSG00000106443.17	ENST00000642461.1:ENST00000634607.2:ENST00000403050.7:ENST00000521747.5:ENST00000423760.6:ENST00000481418.5:ENST00000470665.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	63	2	1.60297	2.4875350000000003	3.3721	0.0647328	0.00182912	0.179192	0.0396683
chr1	23082420	23082485	44414	0	+	0.307692	(0.28,0.32]	chr1	5336	2	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	KDM1A	ENSG00000004487.18	ENST00000692214.1:ENST00000686934.1:ENST00000689853.1:ENST00000465864.2:ENST00000691256.1:ENST00000688122.1:ENST00000692056.1:ENST00000692853.1:ENST00000689366.1:ENST00000686270.1:ENST00000685102.1:ENST00000690627.1:ENST00000686771.1:ENST00000692209.1:ENST00000686339.1:ENST00000691813.1:ENST00000693156.1:ENST00000688235.1:ENST00000692975.1:ENST00000687202.1:ENST00000691682.1:ENST00000691404.1:ENST00000356634.7:ENST00000400181.9:ENST00000689677.1:ENST00000686793.1:ENST00000689971.1:ENST00000688943.1:ENST00000690391.1:ENST00000494920.1:ENST00000685243.1:ENST00000690907.1:ENST00000602503.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	42	2	2.46018	2.4875299999999996	2.51488	0.0380957	0.0375904	0.156054	0.141678
chr11	5450404	5450504	4897725	0	-	0.32	(0.28,0.32]	chr11	459193	90	INTRON	INTRON	HBG2:ENSG00000239920:HBE1:OR51B5	ENSG00000196565.15:ENSG00000239920.2:ENSG00000213931.7:ENSG00000167355.8	ENST00000380252.6:ENST00000380259.7:ENST00000292896.3:ENST00000380237.5:ENST00000420726.6:ENST00000420465.6:ENST00000415970.6:ENST00000418729.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:nonsense_mediated_decay:processed_transcript	2	42	2	2.46018	2.4875299999999996	2.51488	0.0380957	0.0375904	0.156054	0.141678
chr3	47657307	47657406	1683803	0	-	0.292929	(0.28,0.32]	chr3	171996	182	INTRON	INTRON	SMARCC1	ENSG00000173473.11	ENST00000254480.10:ENST00000425518.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	42	2	2.46018	2.4875299999999996	2.51488	0.0380957	0.0375904	0.156054	0.141678
chr5	104256580	104256680	2442981	0	+	0.3	(0.28,0.32]	chr5	234410	1513	INTRON	INTRON	LINC02163	ENSG00000251026.2	ENST00000662211.1:ENST00000666145.1	lncRNA	lncRNA	lncRNA	lncRNA	2	42	2	2.46018	2.4875299999999996	2.51488	0.0380957	0.0375904	0.156054	0.141678
chr1	150928059	150928144	223370	0	+	0.482353	(0.476,0.515]	chr1	25353	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	SETDB1	ENSG00000143379.13	ENST00000487584.6:ENST00000525956.5:ENST00000692314.1:ENST00000463774.1:ENST00000690229.1:ENST00000271640.9:ENST00000448029.5:ENST00000368962.6:ENST00000692827.1:ENST00000534805.5:ENST00000368969.8:ENST00000459773.1:ENST00000368963.5:ENST00000498193.5:ENST00000368964.3:ENST00000423081.1:ENST00000481219.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	33	2	2.3223	2.48749	2.65268	0.0519312	0.0201975	0.159306	0.121243
chr6	30918626	30918726	2842311	0	+	0.49	(0.476,0.515]	chr6	267321	4	SS3_PROX	SS3_PROX:INTRON	VARS2	ENSG00000137411.19	ENST00000321897.9:ENST00000672801.1:ENST00000625423.2:ENST00000676266.1:ENST00000541562.6	protein_coding	protein_coding	protein_coding	protein_coding	2	33	2	2.3223	2.48749	2.65268	0.0519312	0.0201975	0.159306	0.121243
chr6	31801886	31801985	3079883	0	-	0.50505	(0.476,0.515]	chr6	287264	30	INTRON	INTRON	LSM2	ENSG00000204392.11	ENST00000375661.6:ENST00000477182.5:ENST00000470086.5:ENST00000470083.5:ENST00000493387.5:ENST00000491421.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	33	2	2.3223	2.48749	2.65268	0.0519312	0.0201975	0.159306	0.121243
chr7	72919490	72919585	3330194	0	+	0.473684	(0.44,0.476]	chr7	309572	4	EXON_LNCRNA	EXON_LNCRNA:INTRON	POM121:ENSG00000289042	ENSG00000196313.13:ENSG00000289042.1	ENST00000627934.3:ENST00000395270.5:ENST00000689827.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	7	92	2	1.85696	2.487485	3.11801	0.0107727	6.56773e-4	0.0920575	0.0233791
chr22	38491655	38491755	7587935	0	-	0.43	(0.408,0.44]	chr22	776723	23	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	DDX17	ENSG00000100201.23	ENST00000403230.3:ENST00000396821.8:ENST00000216019.11:ENST00000475004.6:ENST00000432525.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	13	137	2	1.24808	2.487455	3.72683	0.0337486	2.97699e-5	0.146709	0.00452621
chr10	1202288	1202387	4380608	0	+	0.484848	(0.476,0.515]	chr10	404019	8	EXON_LNCRNA	EXON_LNCRNA:INTRON	LINC00200	ENSG00000229205.5	ENST00000655745.1:ENST00000666348.1	lncRNA	lncRNA	lncRNA	lncRNA	2	33	2	2.40608	2.48738	2.56868	0.0425709	0.0256676	0.148082	0.133676
chr10	6093359	6093459	4385733	0	+	0.48	(0.476,0.515]	chr10	404761	30	INTRON	INTRON	RBM17	ENSG00000134453.16	ENST00000379888.9:ENST00000437845.6:ENST00000432931.5:ENST00000446108.5	protein_coding	protein_coding	protein_coding	protein_coding	2	33	2	2.40608	2.48738	2.56868	0.0425709	0.0256676	0.148082	0.133676
chr5	36224346	36224445	2601575	0	-	0.50505	(0.476,0.515]	chr5	247293	43	INTRON	INTRON	NADK2	ENSG00000152620.13	ENST00000381937.9:ENST00000397338.5:ENST00000282512.7:ENST00000506945.5:ENST00000514504.5:ENST00000617628.4:ENST00000511088.1	protein_coding	protein_coding	protein_coding	protein_coding	2	33	2	2.40608	2.48738	2.56868	0.0425709	0.0256676	0.148082	0.133676
chr7	152085799	152085899	3450117	0	+	0.48	(0.476,0.515]	chr7	322451	60	INTRON	INTRON	GALNT11	ENSG00000178234.13	ENST00000430044.7:ENST00000482812.1:ENST00000431668.1:ENST00000446096.5:ENST00000447778.5:ENST00000423337.5:ENST00000434507.5:ENST00000415421.5:ENST00000422997.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	33	2	2.40608	2.48738	2.56868	0.0425709	0.0256676	0.148082	0.133676
chr9	137176882	137176977	4375712	0	-	0.484211	(0.476,0.515]	chr9	403310	12	EXON_MRNA	EXON_MRNA:INTRON	ANAPC2	ENSG00000176248.9	ENST00000323927.3:ENST00000487917.1:ENST00000483432.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	33	2	2.40608	2.48738	2.56868	0.0425709	0.0256676	0.148082	0.133676
chrX	123987080	123987180	7717006	0	+	0.51	(0.476,0.515]	chrX	789462	233	INTRON	INTRON	STAG2	ENSG00000101972.20	ENST00000394477.5:ENST00000218089.13:ENST00000455404.5:ENST00000483575.5:ENST00000687810.1:ENST00000687071.1:ENST00000469481.1:ENST00000458700.5:ENST00000371160.5:ENST00000435103.5:ENST00000687852.1:ENST00000371145.8:ENST00000692982.1:ENST00000371157.7:ENST00000691035.1:ENST00000686802.1:ENST00000691383.1:ENST00000686127.1:ENST00000371144.7:ENST00000458176.5:ENST00000466748.5:ENST00000471107.1:ENST00000428941.5:ENST00000435215.5:ENST00000394478.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	33	2	2.40608	2.48738	2.56868	0.0425709	0.0256676	0.148082	0.133676
chr1	156237021	156237111	231144	0	+	0.355556	(0.35,0.378]	chr1	27298	7	EXON_MRNA	EXON_MRNA:INTRON	PMF1	ENSG00000160783.19	ENST00000368279.7:ENST00000368273.8:ENST00000368277.3:ENST00000606952.5:ENST00000497069.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	51	2	2.32464	2.4872199999999998	2.6498	0.0210137	0.0159285	0.122348	0.101453
chr11	34081441	34081539	4767955	0	+	0.530612	(0.515,0.57]	chr11	440984	13	INTRON	INTRON	CAPRIN1	ENSG00000135387.21	ENST00000341394.9:ENST00000528856.5:ENST00000389645.7:ENST00000532820.5:ENST00000530820.5:ENST00000529307.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	86	2	1.77301	2.48721	3.20141	0.0109049	2.65803e-4	0.0873034	0.0144243
chr17	62007224	62007322	6810289	0	-	0.316327	(0.28,0.32]	chr17	672912	37	EXON_MRNA	EXON_MRNA:INTRON	MED13:ENSG00000279133	ENSG00000108510.10:ENSG00000279133.1	ENST00000397786.7:ENST00000624147.1	protein_coding	protein_coding	protein_coding:TEC	protein_coding:TEC	7	127	2	2.08803	2.48719	2.88635	0.0103533	5.14339e-4	0.085045	0.0203753
chr7	119891803	119891903	3630259	0	-	0.31	(0.28,0.32]	chr7	337335	906	INTRON	INTRON	LINC02476	ENSG00000225546.6	ENST00000660268.1:ENST00000431071.5:ENST00000426413.2	lncRNA	lncRNA	lncRNA	lncRNA	15	237	2	1.98918	2.48716	2.98514	0.00159908	2.44381e-4	0.0367961	0.0144094
chr1	207331759	207331852	303370	0	+	0.365591	(0.35,0.378]	chr1	34911	6	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	CD55	ENSG00000196352.18	ENST00000695822.1:ENST00000695823.1:ENST00000695826.1:ENST00000695825.1:ENST00000695824.1:ENST00000367063.6:ENST00000695827.1:ENST00000695828.1:ENST00000645323.1:ENST00000391921.9:ENST00000695829.1:ENST00000367064.9:ENST00000314754.12:ENST00000644836.1:ENST00000343420.6:ENST00000476590.1:ENST00000465534.5:ENST00000488171.6:ENST00000618707.2:ENST00000635614.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	36	2	2.32443	2.487115	2.6498	0.0544216	0.0210137	0.164972	0.122348
chr13	110907721	110907821	5650576	0	-	0.36	(0.35,0.378]	chr13	538387	12	INTRON	INTRON	ANKRD10	ENSG00000088448.14	ENST00000267339.6:ENST00000489973.6:ENST00000310847.8:ENST00000465753.1:ENST00000494859.5:ENST00000460846.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	36	2	2.32443	2.487115	2.6498	0.0544216	0.0210137	0.164972	0.122348
chr19	3575086	3575164	7001041	0	+	0.371795	(0.35,0.378]	chr19	694326	1	SS3_PROX	SS3_PROX:INTRON	HMG20B	ENSG00000064961.19	ENST00000416526.5:ENST00000333651.11:ENST00000417382.5:ENST00000453933.5:ENST00000488973.6:ENST00000435022.5:ENST00000262949.7:ENST00000486028.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	36	2	2.32443	2.487115	2.6498	0.0544216	0.0210137	0.164972	0.122348
chr7	135481590	135481690	3648676	0	-	0.37	(0.35,0.378]	chr7	339187	428	INTRON	INTRON	CNOT4	ENSG00000080802.20	ENST00000541284.6:ENST00000451834.5:ENST00000423368.6:ENST00000361528.8:ENST00000428680.6:ENST00000315544.6:ENST00000491203.5:ENST00000498534.5:ENST00000465721.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	36	2	2.32443	2.487115	2.6498	0.0544216	0.0210137	0.164972	0.122348
chr19	5706859	5706959	7124572	0	-	0.59	(0.57,1]	chr19	717132	4	SS5_PROX	SS5_PROX:INTRON	LONP1	ENSG00000196365.12	ENST00000360614.8:ENST00000587552.5:ENST00000540670.6:ENST00000593119.5:ENST00000585374.5:ENST00000590558.5:ENST00000590729.5:ENST00000590206.1:ENST00000588589.5:ENST00000587365.1:ENST00000591321.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	29	2	2.07956	2.487095	2.89463	0.013114	0.00788262	0.0998629	0.076155
chr1	54380587	54380686	463503	0	-	0.606061	(0.57,1]	chr1	55784	239	INTRON	INTRON	SSBP3	ENSG00000157216.16	ENST00000610401.5:ENST00000357475.9:ENST00000371319.8:ENST00000417664.7:ENST00000533946.6:ENST00000371320.8:ENST00000525990.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	48	2	1.86974	2.487085	3.10443	0.00983148	3.67483e-4	0.0877296	0.017788000000000002
chr21	34117498	34117598	7401535	0	+	0.5	(0.476,0.515]	chr21	753975	114	INTRON	INTRON	MRPS6	ENSG00000243927.6	ENST00000488492.5:ENST00000477091.5:ENST00000399312.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	66	2	2.34237	2.487025	2.63168	0.0237106	0.00223831	0.118716	0.0435144
chr1	212745598	212745698	634318	0	-	0.37	(0.35,0.378]	chr1	74949	56	INTRON	INTRON	NSL1	ENSG00000117697.15	ENST00000366977.8:ENST00000366978.5:ENST00000366976.3:ENST00000626725.1	protein_coding	protein_coding	protein_coding	protein_coding	4	59	2	1.70607	2.487005	3.26794	0.0482819	0.00257067	0.153283	0.0466761
chr1	54334007	54334106	463035	0	-	0.484848	(0.476,0.515]	chr1	55776	77	INTRON	INTRON	SSBP3	ENSG00000157216.16	ENST00000610401.5:ENST00000357475.9:ENST00000371319.8:ENST00000417664.7:ENST00000533946.6:ENST00000326956.12:ENST00000371320.8:ENST00000525990.1:ENST00000528787.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	60	2	2.43242	2.4869950000000003	2.54157	0.0091895	0.00697457	0.0855292	0.0718189
chr4	118619204	118619302	2025021	0	+	0.44898	(0.44,0.476]	chr4	201337	7	INTRON	INTRON	ENSG00000260404	ENSG00000260404.4	ENST00000567913.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	4	54	2	1.61163	2.48697	3.36231	0.0598319	0.00161678	0.169278	0.0369204
chr15	64298820	64298920	6204253	0	-	0.46	(0.44,0.476]	chr15	591743	326	INTRON	INTRON	CSNK1G1:ENSG00000259316	ENSG00000169118.18:ENSG00000259316.12	ENST00000303052.13:ENST00000607537.6:ENST00000561349.6:ENST00000635142.1:ENST00000634654.1:ENST00000634811.1:ENST00000606225.1:ENST00000606793.3:ENST00000634251.1:ENST00000634847.3:ENST00000635324.1:ENST00000635270.1:ENST00000635529.1:ENST00000634318.1:ENST00000635514.1:ENST00000635359.1:ENST00000635160.1:ENST00000635704.1:ENST00000634529.1:ENST00000635511.1:ENST00000635605.1:ENST00000635593.1:ENST00000634259.2:ENST00000560278.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	45	2	1.77101	2.486955	3.2029	0.0693975	0.00308681	0.184298	0.0510391
chrX	45063132	45063228	7650522	0	+	0.260417	[0,0.28]	chrX	782805	5	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000675440.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000621147.5:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1:ENST00000675525.1:ENST00000414389.5:ENST00000675546.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	64	2	2.15457	2.486895	2.81922	0.0269306	0.0197411	0.135288	0.109608
chr22	20569427	20569526	7479991	0	+	0.636364	(0.57,1]	chr22	763022	4	INTRON	INTRON	MED15	ENSG00000099917.17	ENST00000433831.5:ENST00000292733.11:ENST00000263205.11:ENST00000406969.5:ENST00000382974.6:ENST00000492381.5:ENST00000478831.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	29	2	1.79063	2.486815	3.183	0.0356001	0.00254356	0.15159	0.0448135
chr1	44216360	44216457	89749	0	+	0.474227	(0.44,0.476]	chr1	12113	16	EXON_LNCRNA	EXON_LNCRNA:INTRON	DMAP1	ENSG00000178028.14	ENST00000361745.10:ENST00000446292.5:ENST00000372289.7:ENST00000440641.5:ENST00000437511.5:ENST00000471829.5:ENST00000487922.5:ENST00000315913.9:ENST00000372290.4:ENST00000488433.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	45	2	2.08277	2.4866200000000003	2.89047	0.0309998	0.00955699	0.13151	0.0863913
chr18	799832	799932	6940582	0	-	0.38	(0.378,0.408]	chr18	686527	18	INTRON	INTRON	YES1	ENSG00000176105.14	ENST00000584307.5:ENST00000314574.5:ENST00000577611.1:ENST00000581960.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	134	2	2.45247	2.486605	2.52074	0.00103728	9.57797e-4	0.029284	0.0284518
chr7	151517690	151517790	3674904	0	-	0.33	(0.32,0.35]	chr7	341208	4	SS5_PROX	SS5_PROX:INTRON	RHEB	ENSG00000106615.10	ENST00000262187.10:ENST00000472642.5:ENST00000478470.5:ENST00000496004.5:ENST00000470370.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	108	2	1.5852	2.48658	3.38796	0.0351213	1.48523e-4	0.137535	0.0105885
chr10	5689245	5689344	4384385	0	+	0.434343	(0.408,0.44]	chr10	404456	37	INTRON	INTRON	TASOR2	ENSG00000108021.21	ENST00000695832.1:ENST00000328090.9:ENST00000695737.1:ENST00000695833.1:ENST00000695834.1:ENST00000695835.1:ENST00000695836.1:ENST00000473789.5:ENST00000477043.5:ENST00000496681.5:ENST00000480839.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	110	2	1.27107	2.486475	3.70188	0.056267	1.79949e-5	0.166399	0.00323573
chr21	34093166	34093266	7401289	0	+	0.31	(0.28,0.32]	chr21	753967	191	INTRON	INTRON	MRPS6:SLC5A3	ENSG00000243927.6:ENSG00000198743.7	ENST00000488492.5:ENST00000477091.5:ENST00000399312.3:ENST00000381151.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	57	2	2.05458	2.48645	2.91832	0.0381508	0.0102484	0.141764	0.089002
chr22	26527145	26527240	7564425	0	-	0.305263	(0.28,0.32]	chr22	773994	5	INTRON	INTRON	TPST2	ENSG00000128294.16	ENST00000338754.9:ENST00000403880.5:ENST00000398110.6	protein_coding	protein_coding	protein_coding	protein_coding	3	57	2	2.05458	2.48645	2.91832	0.0381508	0.0102484	0.141764	0.089002
chr7	87160457	87160557	3345703	0	+	0.59	(0.57,1]	chr7	311631	46	INTRON	INTRON	DMTF1	ENSG00000135164.19	ENST00000413276.6:ENST00000447863.5:ENST00000579677.5:ENST00000425406.5:ENST00000446796.6:ENST00000420131.5:ENST00000414630.6:ENST00000547146.6:ENST00000579850.5:ENST00000453049.5:ENST00000331242.12:ENST00000430405.7:ENST00000449088.7:ENST00000448598.5:ENST00000428819.5:ENST00000432937.6:ENST00000584619.5:ENST00000432366.6:ENST00000423590.6:ENST00000394703.9:ENST00000584457.5:ENST00000580710.5:ENST00000579592.5:ENST00000434534.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	52	2	2.161	2.48628	2.81156	0.00462668	3.95149e-4	0.062717	0.0185763
chr5	150025552	150025645	2518915	0	+	0.376344	(0.35,0.378]	chr5	240794	5	INTRON	INTRON	HMGXB3	ENSG00000113716.13	ENST00000613459.4:ENST00000503427.5:ENST00000502717.6	protein_coding	protein_coding	protein_coding	protein_coding	3	49	2	1.75561	2.4861899999999997	3.21677	0.0739399	0.00313804	0.190914	0.0514466
chr4	39925136	39925235	2131674	0	-	0.313131	(0.28,0.32]	chr4	210224	20	INTRON	INTRON	PDS5A	ENSG00000121892.15	ENST00000303538.13:ENST00000503396.5:ENST00000513798.1	protein_coding	protein_coding	protein_coding	protein_coding	5	78	2	1.96841	2.48618	3.00395	0.0124199	0.0101329	0.0973643	0.0850389
chr21	9114383	9114483	7426483	0	-	0.34	(0.32,0.35]	chr21	757579	261	INTRON	INTRON	TEKT4P2	ENSG00000188681.12	ENST00000690061.1:ENST00000689141.1:ENST00000688310.1:ENST00000687537.1:ENST00000690096.1:ENST00000687888.1:ENST00000690389.1:ENST00000684989.1:ENST00000416067.6:ENST00000693307.1:ENST00000692383.1:ENST00000685666.1:ENST00000688451.1:ENST00000691190.1:ENST00000685532.1:ENST00000687488.1:ENST00000690713.1:ENST00000691834.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	4	63	2	1.69107	2.4860700000000002	3.28107	0.0517392	0.00262488	0.159306	0.0470772
chr5	65948786	65948886	2371066	0	+	0.58	(0.57,1]	chr5	228472	216	INTRON	INTRON	ERBIN	ENSG00000112851.15	ENST00000380943.6:ENST00000507490.1:ENST00000416865.6:ENST00000380935.5:ENST00000284037.10:ENST00000380938.6:ENST00000511297.5:ENST00000506030.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	33	2	1.87901	2.48607	3.09313	0.0152867	0.00369015	0.108569	0.0535094
chr10	6166109	6166208	4386206	0	+	0.535354	(0.515,0.57]	chr10	404834	17	INTRON	INTRON	PFKFB3	ENSG00000170525.21	ENST00000379789.8:ENST00000536985.6:ENST00000639949.1	protein_coding	protein_coding	protein_coding	protein_coding	8	98	2	2.34988	2.48606	2.62224	0.00194926	5.82626e-4	0.0410995	0.0223753
chr7	26991054	26991154	3509519	0	-	0.51	(0.476,0.515]	chr7	327303	967	INTRON	INTRON	SKAP2	ENSG00000005020.13	ENST00000432747.1	protein_coding	protein_coding	protein_coding	protein_coding	6	84	2	1.82798	2.48604	3.1441	0.0184548	5.63876e-4	0.116598	0.0219303
chr18	12968369	12968468	6876364	0	+	0.454545	(0.44,0.476]	chr18	681295	35	INTRON	INTRON	SEH1L	ENSG00000085415.16	ENST00000262124.15:ENST00000399892.7:ENST00000585730.5:ENST00000589446.5:ENST00000587761.1:ENST00000588251.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	101	2	1.83459	2.4860249999999997	3.13746	0.0198542	8.94727e-5	0.109608	0.0079464
chr5	134170550	134170650	2726291	0	-	0.4	(0.378,0.408]	chr5	256495	2	SS5_PROX	SS5_PROX:INTRON	SKP1	ENSG00000113558.19	ENST00000353411.11:ENST00000522552.5:ENST00000521216.5:ENST00000517625.5:ENST00000523966.5:ENST00000522855.5:ENST00000328392.10:ENST00000519054.5:ENST00000519321.5:ENST00000520417.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	65	2	1.64169	2.485975	3.33026	0.0377255	0.00189824	0.14078	0.0402736
chrX	73957097	73957196	7682226	0	+	0.40404	(0.378,0.408]	chrX	786624	77	INTRON	INTRON	JPX	ENSG00000225470.8	ENST00000664637.1:ENST00000639185.1:ENST00000655090.1:ENST00000640437.1:ENST00000660546.1:ENST00000667886.1:ENST00000660840.1:ENST00000657179.1:ENST00000670506.1:ENST00000657910.1:ENST00000662120.1:ENST00000671207.1:ENST00000659254.1:ENST00000656624.1:ENST00000667573.1:ENST00000660856.1:ENST00000660836.1:ENST00000668590.1:ENST00000658649.1:ENST00000414209.6:ENST00000654137.1:ENST00000670994.1:ENST00000653479.1:ENST00000602772.5:ENST00000655879.1:ENST00000657372.1:ENST00000657096.1:ENST00000602985.6:ENST00000670685.1:ENST00000670503.1:ENST00000663027.1:ENST00000654995.1:ENST00000602895.6:ENST00000654374.1:ENST00000660087.1:ENST00000665032.1:ENST00000671336.1:ENST00000671476.1:ENST00000667057.1:ENST00000670192.1:ENST00000670464.1:ENST00000665345.1:ENST00000661546.1:ENST00000662543.1:ENST00000602938.6:ENST00000664295.1:ENST00000654005.1:ENST00000669149.1:ENST00000659852.1:ENST00000656509.1:ENST00000602294.6:ENST00000667294.1:ENST00000663470.1:ENST00000602920.6:ENST00000671021.1:ENST00000659849.1:ENST00000667937.1:ENST00000661130.1:ENST00000654196.1:ENST00000655994.1:ENST00000659373.1:ENST00000662239.1:ENST00000670805.1:ENST00000656263.1:ENST00000653069.1:ENST00000657638.1:ENST00000653808.1:ENST00000653929.1:ENST00000653885.1:ENST00000659023.1:ENST00000602546.5:ENST00000664328.1:ENST00000659622.1:ENST00000671518.1:ENST00000670408.1	lncRNA	lncRNA	lncRNA	lncRNA	5	65	2	1.64169	2.485975	3.33026	0.0377255	0.00189824	0.14078	0.0402736
chr15	22575453	22575533	5975356	0	+	0.5	(0.476,0.515]	chr15	568219	4	INTRON	INTRON	HERC2P2	ENSG00000276550.5	ENST00000613386.4:ENST00000619021.4:ENST00000618651.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	12	168	2	2.08404	2.48597	2.8879	0.00332119	2.74912e-5	0.0512081	0.00414488
chr17	47669088	47669177	6622781	0	+	0.494382	(0.476,0.515]	chr17	646053	3	INTRON	INTRON	KPNB1	ENSG00000108424.11	ENST00000535458.6:ENST00000583648.6:ENST00000290158.9:ENST00000540627.5:ENST00000582097.5:ENST00000583013.1	protein_coding	protein_coding	protein_coding	protein_coding	16	217	2	2.37023	2.48597	2.60171	1.96149e-4	1.60281e-4	0.0122528	0.0115929
chr7	111466648	111466748	3623153	0	-	0.39	(0.378,0.408]	chr7	337108	739	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000452895.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding	3	48	2	2.26009	2.48596	2.71183	0.0188651	0.0170789	0.110899	0.108861
chr10	21605533	21605633	4405132	0	+	0.51	(0.476,0.515]	chr10	406466	97	INTRON	INTRON	MLLT10	ENSG00000078403.17	ENST00000651097.1:ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000650772.1:ENST00000651298.1:ENST00000495130.5:ENST00000377059.7:ENST00000652258.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	45	2	1.72558	2.4859400000000003	3.2463	0.0767648	0.00262374	0.196164	0.0470772
chr12	48710566	48710665	5319510	0	-	0.373737	(0.35,0.378]	chr12	506424	43	INTRON	INTRON	CCNT1	ENSG00000129315.11	ENST00000618666.4:ENST00000261900.8:ENST00000417344.2:ENST00000640148.1:ENST00000550457.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	49	2	2.04224	2.48588	2.92952	0.0363073	0.00881187	0.138959	0.084878
chr19	21762810	21762909	7159258	0	-	0.40404	(0.378,0.408]	chr19	723737	89	INTRON	INTRON	ZNF100	ENSG00000197020.12	ENST00000358296.11:ENST00000598026.1:ENST00000596452.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	75	2	2.10212	2.485835	2.86955	0.0141232	0.00159247	0.0959618	0.0367961
chrX	118509259	118509359	7708306	0	+	0.51	(0.476,0.515]	chrX	788656	128	INTRON	INTRON	DOCK11	ENSG00000147251.16	ENST00000276202.9:ENST00000276204.10	protein_coding	protein_coding	protein_coding	protein_coding	4	54	2	1.68092	2.48583	3.29074	0.0474026	0.00272563	0.169265	0.0467523
chr1	155847395	155847495	564352	0	-	0.45	(0.44,0.476]	chr1	67384	141	INTRON	INTRON	GON4L	ENSG00000116580.20	ENST00000368331.6:ENST00000615926.4:ENST00000437809.5:ENST00000271883.9:ENST00000361040.9:ENST00000622608.2:ENST00000471341.5:ENST00000468867.1:ENST00000488251.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	60	2	2.47339	2.48581	2.49823	0.0090196	0.00718224	0.080367	0.0756118
chr15	58914864	58914962	6193940	0	-	0.418367	(0.408,0.44]	chr15	590101	7	INTRON	INTRON	SLTM	ENSG00000137776.17	ENST00000380516.7:ENST00000492526.5:ENST00000557924.5:ENST00000558756.5:ENST00000249736.11:ENST00000559305.5:ENST00000480144.5:ENST00000628684.2:ENST00000559880.5:ENST00000558486.5:ENST00000560682.5:ENST00000557950.5:ENST00000559261.1:ENST00000560012.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	47	2	2.27698	2.4857750000000003	2.69457	0.0583528	0.00331036	0.167723	0.0527031
chrX	44885186	44885286	7648722	0	+	0.43	(0.408,0.44]	chrX	782726	108	INTRON	INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000675440.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000621147.5:ENST00000475233.1:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	17	233	2	2.36283	2.48569	2.60855	6.39428e-4	3.00579e-5	0.0231685	0.00436729
chr16	595118	595218	6272757	0	+	0.58	(0.57,1]	chr16	598723	43	INTRON	INTRON	RAB40C	ENSG00000197562.10	ENST00000535977.5:ENST00000569575.5:ENST00000539661.5:ENST00000566290.5:ENST00000248139.8:ENST00000568586.5:ENST00000538492.5:ENST00000565511.5:ENST00000509637.6:ENST00000563109.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	32	2	2.38391	2.48562	2.58733	0.0104374	0.00454222	0.0902296	0.0595107
chr6	13646713	13646812	3058570	0	-	0.323232	(0.32,0.35]	chr6	284524	16	INTRON	INTRON	RANBP9	ENSG00000010017.13	ENST00000011619.6	protein_coding	protein_coding	protein_coding	protein_coding	8	95	2	1.69257	2.485575	3.27858	0.0122626	0.00368368	0.0969406	0.0535094
chr16	71906261	71906361	6386714	0	+	0.5	(0.476,0.515]	chr16	614084	22	INTRON	INTRON	IST1	ENSG00000182149.21	ENST00000568581.5:ENST00000540296.5:ENST00000544564.5:ENST00000541571.6:ENST00000538104.5:ENST00000535424.5:ENST00000606369.5:ENST00000537613.5:ENST00000424485.6:ENST00000566536.5:ENST00000378799.11:ENST00000538565.5:ENST00000329908.12:ENST00000538850.5:ENST00000541918.5:ENST00000378798.9:ENST00000534994.5:ENST00000539186.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	99	2	2.34867	2.4855349999999996	2.6224	0.00539703	5.5634e-4	0.0644048	0.0214853
chr1	44641170	44641268	92185	0	+	0.510204	(0.476,0.515]	chr1	12216	24	INTRON	INTRON	RNF220	ENSG00000187147.18	ENST00000355387.6:ENST00000361799.7:ENST00000372247.6:ENST00000440132.2:ENST00000335497.11:ENST00000474064.5:ENST00000471494.5:ENST00000497469.5:ENST00000475378.5:ENST00000484745.5:ENST00000474394.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	45	2	2.16377	2.48553	2.80729	0.0243026	0.0126008	0.12011	0.0980703
chr16	3715627	3715726	6434459	0	-	0.515152	(0.476,0.515]	chr16	619383	48	INTRON	INTRON	TRAP1	ENSG00000126602.11	ENST00000246957.10:ENST00000538171.5:ENST00000571804.5:ENST00000574941.5:ENST00000576106.5:ENST00000571011.1:ENST00000570403.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	45	2	2.16377	2.48553	2.80729	0.0243026	0.0126008	0.12011	0.0980703
chr13	110905666	110905733	5650555	0	-	0.328358	(0.32,0.35]	chr13	538381	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ANKRD10	ENSG00000088448.14	ENST00000267339.6:ENST00000489973.6:ENST00000310847.8:ENST00000465753.1:ENST00000494859.5:ENST00000464579.1:ENST00000463156.1:ENST00000460846.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	18	284	2	2.46541	2.48545	2.50549	4.56857e-4	8.93187e-5	0.0197007	0.00794582
chr9	88397608	88397708	4152138	0	+	0.5	(0.476,0.515]	chr9	378721	78	INTRON	INTRON	SPIN1	ENSG00000106723.17	ENST00000485804.5:ENST00000469017.6:ENST00000375859.4:ENST00000462844.5:ENST00000485565.6:ENST00000483785.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	45	2	2.48527	2.4853899999999998	2.48551	0.03496	0.00756632	0.13747500000000001	0.0773151
chr5	157855930	157856030	2758623	0	-	0.34	(0.32,0.35]	chr5	260304	380	INTRON	INTRON	CLINT1	ENSG00000113282.14	ENST00000523094.5:ENST00000411809.7:ENST00000530742.5:ENST00000523908.5	protein_coding	protein_coding	protein_coding	protein_coding	4	63	2	2.22655	2.48535	2.74415	0.0198267	0.00823133	0.109608	0.0812969
chr17	70047914	70048013	6827924	0	-	0.393939	(0.378,0.408]	chr17	674995	254	INTRON	INTRON	ENSG00000230258	ENSG00000230258.6	ENST00000435112.5:ENST00000587325.1	lncRNA	lncRNA	lncRNA	lncRNA	7	104	2	2.27309	2.485325	2.69756	0.00769587	3.80456e-4	0.0754631	0.0176313
chr21	39266115	39266215	7465056	0	-	0.38	(0.378,0.408]	chr21	760508	7	INTRON	INTRON	BRWD1	ENSG00000185658.14	ENST00000333229.6:ENST00000342449.8:ENST00000380800.7:ENST00000430093.5:ENST00000445245.5:ENST00000445668.5:ENST00000412604.1:ENST00000455867.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	104	2	2.27309	2.485325	2.69756	0.00769587	3.80456e-4	0.0754631	0.0176313
chr1	173862768	173862867	587039	0	-	0.535354	(0.515,0.57]	chr1	70634	31	INTRON	INTRON	GAS5	ENSG00000234741.9	ENST00000651080.1	lncRNA	lncRNA	lncRNA	lncRNA	4	54	2	2.46104	2.485285	2.50953	0.032841	0.0023952	0.145164	0.0440612
chr10	32031949	32032034	4590570	0	-	0.482353	(0.476,0.515]	chr10	423248	3	INTRON	INTRON	KIF5B	ENSG00000170759.11	ENST00000302418.5	protein_coding	protein_coding	protein_coding	protein_coding	6	68	2	1.77073	2.48524	3.19975	0.0151174	0.00383299	0.108513	0.0542786
chr17	49756919	49757019	6794084	0	-	0.4	(0.378,0.408]	chr17	670428	98	INTRON	INTRON	FAM117A	ENSG00000121104.8	ENST00000240364.7:ENST00000513602.5:ENST00000503855.5:ENST00000514018.5:ENST00000505159.5:ENST00000506156.1:ENST00000509347.5:ENST00000503720.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	47	2	2.11194	2.48524	2.85854	0.0292534	0.0107837	0.128055	0.0920575
chr17	27312209	27312269	6580726	0	+	0.55	(0.515,0.57]	chr17	639647	1	CDS	CDS:EXON_MRNA	WSB1	ENSG00000109046.15	ENST00000467843.6:ENST00000262394.7:ENST00000348811.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	19	198	2	2.13716	2.4852100000000004	2.83326	2.06346e-4	8.26788e-5	0.0124958	0.00812487
chr3	37259062	37259162	1395912	0	+	0.33	(0.32,0.35]	chr3	146319	72	INTRON	INTRON	GOLGA4	ENSG00000144674.17	ENST00000435830.6:ENST00000444882.5:ENST00000356847.8:ENST00000450863.6:ENST00000361924.7:ENST00000429018.5:ENST00000431105.1:ENST00000419177.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	147	2	2.33514	2.48521	2.63528	0.00690847	1.78686e-4	0.0718189	0.0116621
chr4	70825826	70825925	2155677	0	-	0.585859	(0.57,1]	chr4	212369	5	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GRSF1	ENSG00000132463.15	ENST00000254799.11:ENST00000505068.5:ENST00000499044.6:ENST00000502323.5:ENST00000514161.5:ENST00000506453.1:ENST00000508091.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	29	2	1.74185	2.4852049999999997	3.22856	0.0401765	0.00205928	0.143911	0.0420839
chr1	185079459	185079559	275898	0	+	0.37	(0.35,0.378]	chr1	32263	328	INTRON	INTRON	RNF2	ENSG00000121481.11	ENST00000367509.8:ENST00000498201.1:ENST00000367510.8:ENST00000453650.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	36	2	2.24535	2.4851650000000003	2.72498	0.0647516	0.0168499	0.179192	0.11068
chr11	31679990	31680090	4762526	0	+	0.37	(0.35,0.378]	chr11	440407	157	INTRON	INTRON	ELP4	ENSG00000109911.19	ENST00000639878.1:ENST00000379163.10:ENST00000350638.10:ENST00000638347.1:ENST00000640961.2:ENST00000640081.1:ENST00000640342.1:ENST00000640231.1:ENST00000638917.1:ENST00000395934.2:ENST00000640954.1:ENST00000638184.1:ENST00000638984.1:ENST00000640790.1:ENST00000639097.1:ENST00000638828.1:ENST00000639182.1:ENST00000638317.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	36	2	2.24535	2.4851650000000003	2.72498	0.0647516	0.0168499	0.179192	0.11068
chr17	66442008	66442108	6663692	0	+	0.36	(0.35,0.378]	chr17	650326	778	INTRON	INTRON	PRKCA	ENSG00000154229.12	ENST00000413366.8:ENST00000578063.5:ENST00000284384.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	36	2	2.24535	2.4851650000000003	2.72498	0.0647516	0.0168499	0.179192	0.11068
chr7	92831990	92832090	3573215	0	-	0.37	(0.35,0.378]	chr7	332810	568	INTRON	INTRON	CDK6	ENSG00000105810.10	ENST00000424848.3:ENST00000265734.8	protein_coding	protein_coding	protein_coding	protein_coding	2	36	2	2.24535	2.4851650000000003	2.72498	0.0647516	0.0168499	0.179192	0.11068
chr17	65028002	65028102	6818134	0	-	0.59	(0.57,1]	chr17	674129	93	INTRON	INTRON	GNA13	ENSG00000120063.10	ENST00000439174.7:ENST00000541118.1	protein_coding	protein_coding	protein_coding	protein_coding	4	29	2	1.83769	2.485115	3.13254	0.0297587	0.00310655	0.12908	0.0512344
chr9	92516057	92516157	4156347	0	+	0.61	(0.57,1]	chr9	379002	1358	INTRON	INTRON	CENPP	ENSG00000188312.14	ENST00000375587.8	protein_coding	protein_coding	protein_coding	protein_coding	4	29	2	1.83769	2.485115	3.13254	0.0297587	0.00310655	0.12908	0.0512344
chr7	101829470	101829570	3366483	0	+	0.59	(0.57,1]	chr7	315215	101	INTRON	INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000497815.5:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000607092.1:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000558469.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	47	2	1.52818	2.485055	3.44193	0.0508101	4.86135e-5	0.175989	0.00605189
chr7	72994958	72995058	3554066	0	-	0.39	(0.378,0.408]	chr7	330646	116	INTRON	INTRON	STAG3L3	ENSG00000174353.17	ENST00000436857.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	13	187	2	2.46715	2.485035	2.50292	5.01571e-4	2.33643e-4	0.0207034	0.0135358
chrX	66212540	66212640	7673189	0	+	0.33	(0.32,0.35]	chrX	785355	39	INTRON	INTRON	HEPH	ENSG00000089472.18	ENST00000519389.6:ENST00000683049.1:ENST00000458621.6:ENST00000684042.1:ENST00000343002.7:ENST00000336279.9:ENST00000441993.7:ENST00000419594.6:ENST00000682362.1:ENST00000425114.2:ENST00000682927.1:ENST00000683420.1:ENST00000684071.1:ENST00000684625.1:ENST00000684603.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	64	2	1.8903	2.4850250000000003	3.07975	0.0298043	0.00554235	0.129138	0.0674105
chr7	127348642	127348741	3633799	0	-	0.363636	(0.35,0.378]	chr7	337745	2	INTRON	INTRON	ZNF800	ENSG00000048405.11	ENST00000485577.1	protein_coding	processed_transcript	protein_coding	processed_transcript	2	36	2	2.39939	2.48494	2.57049	0.0458078	0.0262669	0.149888	0.133676
chr15	76291730	76291830	6228151	0	-	0.3	(0.28,0.32]	chr15	594946	34	INTRON	INTRON	ETFA	ENSG00000140374.17	ENST00000690610.1:ENST00000557943.6:ENST00000692691.1:ENST00000688389.1:ENST00000687293.1:ENST00000691695.1:ENST00000685863.1:ENST00000689730.1:ENST00000687975.1:ENST00000693064.1:ENST00000688908.1:ENST00000691021.1:ENST00000433983.6:ENST00000267950.12:ENST00000685548.1:ENST00000565910.6:ENST00000688154.1:ENST00000560595.6:ENST00000560726.5:ENST00000559602.5:ENST00000560044.6:ENST00000559973.5:ENST00000559386.2:ENST00000560899.5:ENST00000685118.1:ENST00000688637.1:ENST00000559075.5:ENST00000689739.1:ENST00000691071.1:ENST00000559758.5:ENST00000560345.5:ENST00000560309.5:ENST00000561092.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	56	2	2.28998	2.484865	2.67975	0.0252505	0.0166401	0.12011	0.110511
chr2	113893164	113893263	854274	0	+	0.313131	(0.28,0.32]	chr2	95895	20	INTRON	INTRON	ACTR3	ENSG00000115091.12	ENST00000443297.5:ENST00000263238.7:ENST00000415792.5:ENST00000446821.5:ENST00000535589.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	57	2	2.45545	2.484855	2.51426	0.0438092	0.00781326	0.14901	0.0788246
chr7	36433831	36433930	3307464	0	+	0.282828	(0.28,0.32]	chr7	307191	51	INTRON	INTRON	ANLN	ENSG00000011426.11	ENST00000396068.6:ENST00000265748.7:ENST00000428612.5:ENST00000457743.1	protein_coding	protein_coding	protein_coding	protein_coding	3	57	2	2.45545	2.484855	2.51426	0.0438092	0.00781326	0.14901	0.0788246
chr11	62578460	62578560	4959648	0	-	0.51	(0.476,0.515]	chr11	466287	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	TUT1	ENSG00000149016.16	ENST00000308436.11:ENST00000476907.6	protein_coding	protein_coding	protein_coding	protein_coding	3	45	2	1.91817	2.484845	3.05152	0.0459211	0.0064848	0.164984	0.0699952
chr2	135061805	135061902	872764	0	+	0.350515	(0.35,0.378]	chr2	97739	14	EXON_LNCRNA	EXON_LNCRNA:INTRON	RAB3GAP1	ENSG00000115839.19	ENST00000539493.3:ENST00000688088.1:ENST00000693554.1:ENST00000690785.1:ENST00000689880.1:ENST00000264158.13:ENST00000686403.1:ENST00000690208.1:ENST00000691478.1:ENST00000686114.1:ENST00000685967.1:ENST00000442034.5:ENST00000687199.1:ENST00000691339.1:ENST00000688182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	61	2	2.43108	2.48482	2.53856	0.0326077	0.00345501	0.133687	0.0539802
chr12	45760399	45760499	5123023	0	+	0.3	(0.28,0.32]	chr12	483303	45	INTRON	INTRON	ARID2	ENSG00000189079.17	ENST00000334344.11:ENST00000426776.5:ENST00000422737.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	56	2	2.1895	2.48477	2.78004	0.0227063	0.0193244	0.124921	0.108861
chr15	42872010	42872110	6158515	0	-	0.3	(0.28,0.32]	chr15	586287	141	INTRON	INTRON	TTBK2	ENSG00000128881.18	ENST00000267890.11:ENST00000567840.5:ENST00000567274.5:ENST00000564431.5:ENST00000562880.5:ENST00000566931.1:ENST00000567485.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	56	2	2.1895	2.48477	2.78004	0.0227063	0.0193244	0.124921	0.108861
chr7	111414395	111414495	3622630	0	-	0.29	(0.28,0.32]	chr7	337108	216	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000452895.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding	5	94	2	2.33573	2.4847599999999996	2.63379	0.00764237	0.00503861	0.0752681	0.0646039
chr1	47269035	47269134	445644	0	-	0.444444	(0.44,0.476]	chr1	53995	56	INTRON	INTRON	STIL	ENSG00000123473.17	ENST00000360380.7:ENST00000371877.8:ENST00000337817.10:ENST00000682940.1:ENST00000683977.1:ENST00000682977.1:ENST00000396221.6:ENST00000684618.1:ENST00000447475.7:ENST00000418131.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	17	233	2	2.43917	2.4847349999999997	2.5303	1.75579e-4	1.254e-4	0.01216	0.00957656
chr7	121245637	121245737	3396227	0	+	0.42	(0.408,0.44]	chr7	317793	9	INTRON	INTRON	CPED1	ENSG00000106034.18	ENST00000310396.10:ENST00000450913.6:ENST00000423795.5:ENST00000466055.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	15	197	2	2.05945	2.4846	2.90975	9.09614e-4	8.63194e-5	0.0277043	0.00834955
chr12	11031235	11031335	5268101	0	-	0.33	(0.32,0.35]	chr12	502231	1	CDS_START	CDS_START:CDS:EXON_MRNA:INTRON	ENSG00000275778:PRH1:TAS2R31	ENSG00000275778.2:ENSG00000231887.8:ENSG00000256436.1	ENST00000536668.2:ENST00000535024.6:ENST00000539853.5:ENST00000541977.5:ENST00000536086.2:ENST00000534923.1:ENST00000541456.1:ENST00000390675.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	72	2	1.94202	2.48444	3.02686	0.0486128	8.86699e-4	0.153946	0.0271952
chr19	53875950	53876047	7098498	0	+	0.42268	(0.408,0.44]	chr19	711790	16	UTR3	UTR3:EXON_MRNA	MYADM	ENSG00000179820.16	ENST00000391770.9:ENST00000391771.1:ENST00000391769.2	protein_coding	protein_coding	protein_coding	protein_coding	6	83	2	2.04842	2.484375	2.92033	0.00797555	0.00162151	0.0798772	0.0367655
chr14	101888397	101888495	5819784	0	+	0.571429	(0.57,1]	chr14	551895	45	INTRON	INTRON	PPP2R5C	ENSG00000078304.20	ENST00000694906.1:ENST00000422945.6:ENST00000328724.9:ENST00000350249.7:ENST00000557621.5:ENST00000334743.9:ENST00000445439.7:ENST00000557095.5:ENST00000554137.5:ENST00000556218.5:ENST00000557534.1:ENST00000557716.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	65	2	2.36923	2.484305	2.59938	7.89579e-4	4.6166e-4	0.0259532	0.0194611
chr6	30323728	30323826	3076964	0	-	0.306122	(0.28,0.32]	chr6	286157	36	INTRON	INTRON	HCG18	ENSG00000231074.10	ENST00000665953.1:ENST00000670397.1:ENST00000659132.1:ENST00000659836.1:ENST00000669374.1:ENST00000653541.1:ENST00000670071.1:ENST00000666294.1:ENST00000657247.1:ENST00000654996.1:ENST00000653301.1:ENST00000658695.1:ENST00000664861.1:ENST00000668974.1:ENST00000654915.1:ENST00000687430.1:ENST00000656629.1:ENST00000602550.5:ENST00000687815.1:ENST00000449544.6:ENST00000426882.6:ENST00000438412.6:ENST00000602698.6:ENST00000454129.5:ENST00000444126.5:ENST00000602290.2:ENST00000412685.8:ENST00000602861.6:ENST00000454269.6:ENST00000686575.1:ENST00000687471.1:ENST00000691282.1:ENST00000413358.6:ENST00000602498.1	lncRNA	lncRNA	lncRNA	lncRNA	4	76	2	2.29708	2.484305	2.67153	0.0195087	0.00436402	0.109483	0.060356
chr2	235566228	235566328	1042059	0	+	0.5	(0.476,0.515]	chr2	111222	413	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1:ENST00000402604.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	92	2	1.77073	2.48427	3.19781	0.0151174	4.3655e-4	0.108513	0.0191798
chr7	10742397	10742497	3484204	0	-	0.59	(0.57,1]	chr7	325772	1805	INTRON	INTRON	MGC4859	ENSG00000283117.1	ENST00000634803.1	lncRNA	lncRNA	lncRNA	lncRNA	5	38	2	2.46083	2.484125	2.50742	0.00631173	0.00255312	0.0687526	0.0466386
chr1	1882565	1882665	362756	0	-	0.39	(0.378,0.408]	chr1	42311	425	INTRON	INTRON	GNB1	ENSG00000078369.18	ENST00000610897.4:ENST00000615252.4:ENST00000378609.9:ENST00000439272.6:ENST00000434686.6:ENST00000472614.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	46	2	2.23831	2.48412	2.72993	0.0188736	0.0179575	0.114265	0.108861
chr15	44465681	44465781	6014733	0	+	0.4	(0.378,0.408]	chr15	572922	61	INTRON	INTRON	CTDSPL2	ENSG00000137770.14	ENST00000558791.5:ENST00000260327.9:ENST00000560834.1:ENST00000558966.5:ENST00000559793.5:ENST00000558968.1:ENST00000558373.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	46	2	2.23831	2.48412	2.72993	0.0188736	0.0179575	0.114265	0.108861
chr21	18637179	18637279	7434174	0	-	0.37	(0.35,0.378]	chr21	758112	245	INTRON	INTRON	MIR548XHG	ENSG00000224141.6	ENST00000671206.1:ENST00000437492.6:ENST00000355189.7:ENST00000653218.1:ENST00000656413.1:ENST00000414582.1	lncRNA	lncRNA	lncRNA	lncRNA	3	56	2	2.30249	2.4840850000000003	2.66568	0.0519726	0.00496487	0.176696	0.0615009
chr7	44846588	44846686	3528669	0	-	0.27551	[0,0.28]	chr7	329123	29	INTRON	INTRON	H2AZ2	ENSG00000105968.19	ENST00000222690.10:ENST00000437072.5:ENST00000308153.9:ENST00000350771.7:ENST00000349299.7:ENST00000381124.9:ENST00000521529.5:ENST00000446531.1	protein_coding	protein_coding	protein_coding	protein_coding	4	87	2	2.33825	2.48405	2.62985	0.0195228	0.00581422	0.109483	0.068681
chr6	147688610	147688710	2990882	0	+	0.44	(0.408,0.44]	chr6	280163	121	INTRON	INTRON	ENSG00000227681	ENSG00000227681.5	ENST00000427015.1:ENST00000432506.5:ENST00000442094.5	lncRNA	lncRNA	lncRNA	lncRNA	3	45	2	1.88062	2.484	3.08738	0.0534548	0.00478231	0.162935	0.0636201
chr7	22857370	22857468	3288717	0	+	0.428571	(0.408,0.44]	chr7	305434	4	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	SNHG26	ENSG00000228649.10	ENST00000415611.8:ENST00000667557.1:ENST00000422542.4:ENST00000656301.1:ENST00000661147.1:ENST00000656687.2:ENST00000662021.1:ENST00000691516.1:ENST00000685098.1:ENST00000689892.1:ENST00000663057.1:ENST00000657608.1:ENST00000688000.1:ENST00000690219.1:ENST00000658124.1:ENST00000661582.1	lncRNA	lncRNA	lncRNA	lncRNA	8	81	2	1.20916	2.48399	3.75882	0.0631681	4.04678e-4	0.197212	0.0185763
chr13	51931260	51931359	5596082	0	-	0.363636	(0.35,0.378]	chr13	534869	3	INTRON	INTRON	ATP7B	ENSG00000123191.16	ENST00000634519.1	protein_coding	processed_transcript	protein_coding	processed_transcript	2	37	2	2.30249	2.48398	2.66547	0.0519726	0.0233639	0.176696	0.118323
chr14	74100454	74100554	5787449	0	+	0.37	(0.35,0.378]	chr14	548340	22	INTRON	INTRON	LIN52	ENSG00000205659.12	ENST00000555028.7:ENST00000554938.2:ENST00000553404.5:ENST00000554076.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	37	2	2.30249	2.48398	2.66547	0.0519726	0.0233639	0.176696	0.118323
chr15	92992358	92992458	6104654	0	+	0.36	(0.35,0.378]	chr15	581573	1	SS3_PROX	SS3_PROX:INTRON	CHD2	ENSG00000173575.22	ENST00000626874.2:ENST00000394196.9:ENST00000635856.1:ENST00000637572.1:ENST00000636881.1:ENST00000636306.1:ENST00000637789.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	75	2	1.88357	2.48394	3.08431	0.0100866	0.0065853	0.0884696	0.0701901
chr1	77592554	77592654	492556	0	-	0.44	(0.408,0.44]	chr1	58292	75	INTRON	INTRON	ZZZ3	ENSG00000036549.13	ENST00000370801.8:ENST00000481346.5:ENST00000476275.5:ENST00000370798.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	45	2	1.94273	2.48393	3.02513	0.0456237	0.0059965	0.149888	0.0700606
chr3	42630674	42630773	1406282	0	+	0.414141	(0.408,0.44]	chr3	147682	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NKTR	ENSG00000114857.19	ENST00000468735.6:ENST00000429888.5:ENST00000232978.13:ENST00000465584.5:ENST00000466553.1:ENST00000498730.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	45	2	1.94273	2.48393	3.02513	0.0456237	0.0059965	0.149888	0.0700606
chr8	54046865	54046965	3953318	0	-	0.26	[0,0.28]	chr8	362580	6	UTR3	UTR3:EXON_MRNA	LYPLA1	ENSG00000120992.18	ENST00000316963.8:ENST00000618914.4:ENST00000618741.1	protein_coding	protein_coding	protein_coding	protein_coding	4	77	2	2.02929	2.483895	2.9385	0.0189138	0.0142776	0.118303	0.0963703
chr2	3578649	3578746	686935	0	+	0.329897	(0.32,0.35]	chr2	80601	10	EXON_MRNA	EXON_MRNA:INTRON	RPS7	ENSG00000171863.15	ENST00000645674.2:ENST00000646909.1:ENST00000647131.1:ENST00000462576.5:ENST00000403564.5:ENST00000407445.8:ENST00000481006.1:ENST00000406376.1:ENST00000645540.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	72	2	2.30476	2.4838899999999997	2.66302	0.0151817	0.00542632	0.108535	0.0645052
chr6	73521012	73521110	3139457	0	-	0.540816	(0.515,0.57]	chr6	292540	11	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	EEF1A1	ENSG00000156508.19	ENST00000676547.1:ENST00000309268.11:ENST00000610520.5:ENST00000316292.13:ENST00000356303.7:ENST00000331523.7:ENST00000490569.6:ENST00000678515.1:ENST00000678702.1:ENST00000677236.1:ENST00000455918.2:ENST00000491404.2:ENST00000488500.2:ENST00000495333.6:ENST00000678703.1:ENST00000678143.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	174	1892	2	2.13143	2.4838899999999997	2.83635	9.74734e-6	1.29769e-7	0.00226635	1.72161e-4
chr17	22098202	22098302	6578645	0	+	0.34	(0.32,0.35]	chr17	639556	69	INTRON	INTRON	UBBP4	ENSG00000263563.7	ENST00000648259.1:ENST00000688301.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	4	70	2	2.42352	2.4838	2.54408	0.0122807	0.00659077	0.091087	0.0737338
chr7	26199283	26199378	3506226	0	-	0.378947	(0.378,0.408]	chr7	327192	2	UTR5	UTR5:EXON_MRNA:INTRON	HNRNPA2B1	ENSG00000122566.22	ENST00000679318.1:ENST00000677339.1:ENST00000678501.1:ENST00000676903.1:ENST00000608362.2:ENST00000677631.1:ENST00000676749.1:ENST00000677574.1:ENST00000679123.1:ENST00000677906.1:ENST00000476233.2:ENST00000677669.1:ENST00000677321.1:ENST00000678277.1:ENST00000677571.1:ENST00000679124.1:ENST00000676932.1:ENST00000678973.1:ENST00000678183.1:ENST00000679021.1:ENST00000678035.1:ENST00000677075.1:ENST00000678075.1:ENST00000678631.1:ENST00000678998.1:ENST00000490912.6:ENST00000354667.8:ENST00000618183.5:ENST00000677839.1:ENST00000677037.1:ENST00000678449.1:ENST00000679001.1:ENST00000678962.1:ENST00000676524.1:ENST00000678935.1:ENST00000678675.1:ENST00000676746.1:ENST00000356674.8:ENST00000678431.1:ENST00000678697.1:ENST00000678779.1:ENST00000676497.1:ENST00000677396.1:ENST00000360787.8:ENST00000679243.1:ENST00000677656.1:ENST00000463181.5:ENST00000678884.1:ENST00000495810.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	119	2	1.67817	2.48377	3.28937	0.00957714	3.2389e-4	0.0865341	0.0165891
chr4	57006415	57006515	1964217	0	+	0.48	(0.476,0.515]	chr4	197147	2	SS3_PROX	SS3_PROX:INTRON	POLR2B	ENSG00000047315.17	ENST00000381227.5:ENST00000431623.6:ENST00000441246.6:ENST00000314595.6	protein_coding	protein_coding	protein_coding	protein_coding	5	73	2	2.38129	2.48372	2.58615	0.00515536	0.00474233	0.0650394	0.0600445
chr7	152059203	152059303	3449846	0	+	0.47	(0.44,0.476]	chr7	322435	311	INTRON	INTRON	GALNT11	ENSG00000178234.13	ENST00000430044.7:ENST00000482812.1:ENST00000431668.1:ENST00000446096.5:ENST00000447778.5:ENST00000423337.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	10	137	2	1.99288	2.4837100000000003	2.97454	0.00506305	7.44944e-5	0.0621733	0.00720956
chr17	50723427	50723525	6627005	0	+	0.265306	[0,0.28]	chr17	647179	8	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	LUC7L3:ENSG00000278963	ENSG00000108848.16:ENSG00000278963.1	ENST00000625349.2:ENST00000508045.5:ENST00000508218.5:ENST00000509335.5:ENST00000506686.5:ENST00000393227.6:ENST00000504563.6:ENST00000505658.6:ENST00000240304.5:ENST00000508482.5:ENST00000505619.5:ENST00000510984.5:ENST00000507200.5:ENST00000623774.1	protein_coding	protein_coding	protein_coding:TEC	protein_coding:retained_intron:nonsense_mediated_decay:TEC	3	64	2	2.3719	2.48369	2.59548	0.0346067	0.0139689	0.136649	0.10247
chr1	25903150	25903248	404593	0	-	0.326531	(0.32,0.35]	chr1	48552	16	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	STMN1	ENSG00000117632.23	ENST00000426559.6:ENST00000455785.7:ENST00000399728.5:ENST00000465604.1:ENST00000357865.6:ENST00000374291.5:ENST00000485226.1:ENST00000446334.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	71	2	1.80487	2.48362	3.16237	0.0210603	0.00550276	0.122559	0.0648867
chr10	28581500	28581599	4414289	0	+	0.393939	(0.378,0.408]	chr10	407148	431	INTRON	INTRON	WAC	ENSG00000095787.24	ENST00000680735.1:ENST00000375664.8:ENST00000428935.6:ENST00000651598.1:ENST00000628285.3:ENST00000681112.1:ENST00000679570.1:ENST00000375646.5:ENST00000354911.9:ENST00000347934.8:ENST00000420266.6:ENST00000651885.1:ENST00000651441.1:ENST00000679398.1:ENST00000424454.5:ENST00000442148.6:ENST00000448193.5:ENST00000414108.6:ENST00000679428.1:ENST00000439676.5:ENST00000345541.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	35	2	2.36428	2.48362	2.60296	0.0441088	0.0267851	0.162255	0.123349
chr16	67567890	67567981	6367661	0	+	0.406593	(0.378,0.408]	chr16	611809	1	UTR5	UTR5:EXON_MRNA:INTRON	CTCF	ENSG00000102974.16	ENST00000646076.1:ENST00000644852.1:ENST00000264010.10:ENST00000401394.6:ENST00000646771.1:ENST00000642847.1	protein_coding	protein_coding	protein_coding	protein_coding	2	35	2	2.36428	2.48362	2.60296	0.0441088	0.0267851	0.162255	0.123349
chr3	198212110	198212210	1600288	0	+	0.38	(0.378,0.408]	chr3	165919	3	SS5_PROX	SS5_PROX:INTRON	FAM157A	ENSG00000236438.7	ENST00000634862.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	2	35	2	2.36428	2.48362	2.60296	0.0441088	0.0267851	0.162255	0.123349
chr21	44052776	44052876	7415439	0	+	0.34	(0.32,0.35]	chr21	755800	3	SS5_PROX	SS5_PROX:INTRON	TRAPPC10	ENSG00000160218.13	ENST00000291574.9:ENST00000380221.7:ENST00000422875.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	165	2	2.14374	2.48361	2.82348	0.0048878	1.09224e-4	0.0608499	0.00884858
chr11	130301986	130302086	5053737	0	-	0.42	(0.408,0.44]	chr11	476969	397	INTRON	INTRON	ZBTB44	ENSG00000196323.14	ENST00000357899.9:ENST00000527478.6:ENST00000445008.6:ENST00000525842.5:ENST00000397753.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	55	2	1.87977	2.483575	3.08738	0.0282738	0.00478231	0.125825	0.0636201
chr3	119499242	119499342	1485387	0	+	0.43	(0.408,0.44]	chr3	155155	3	SS5_PROX	SS5_PROX:INTRON	TIMMDC1	ENSG00000113845.10	ENST00000494664.6:ENST00000493694.1:ENST00000264244.7:ENST00000486418.5:ENST00000492164.5:ENST00000466984.1:ENST00000463927.6:ENST00000498399.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	55	2	1.87977	2.483575	3.08738	0.0282738	0.00478231	0.125825	0.0636201
chr16	24747037	24747136	6329387	0	+	0.353535	(0.35,0.378]	chr16	605933	164	INTRON	INTRON	TNRC6A	ENSG00000090905.19	ENST00000566108.2:ENST00000395799.8:ENST00000315183.11:ENST00000562829.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	58	2	1.97646	2.48345	2.99044	0.0193942	0.00894806	0.119831	0.0799922
chr8	25447336	25447434	3926236	0	-	0.459184	(0.44,0.476]	chr8	359451	7	INTRON	INTRON	KCTD9	ENSG00000104756.16	ENST00000221200.9:ENST00000519665.5:ENST00000523140.5:ENST00000522493.5:ENST00000518067.5:ENST00000518997.5:ENST00000523294.5:ENST00000521458.5:ENST00000524217.1:ENST00000520405.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	110	2	2.15225	2.483435	2.81462	0.00247064	0.00129761	0.0446195	0.0333764
chr11	70416663	70416739	4821804	0	+	0.5	(0.476,0.515]	chr11	449629	3	SS3_PROX	SS3_PROX:INTRON	CTTN	ENSG00000085733.16	ENST00000346329.7:ENST00000301843.13:ENST00000376561.7:ENST00000415461.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	53	2	1.96833	2.483425	2.99852	0.0195007	0.0077575	0.119967	0.0757402
chr20	34044306	34044405	7258445	0	+	0.444444	(0.44,0.476]	chr20	737334	107	INTRON	INTRON	RALY	ENSG00000125970.12	ENST00000375114.7:ENST00000448364.5:ENST00000413297.5:ENST00000246194.8:ENST00000333552.9:ENST00000442805.1	protein_coding	protein_coding	protein_coding	protein_coding	6	88	2	2.34775	2.483355	2.61896	0.00466011	0.0017827	0.0629753	0.0379201
chr3	141882556	141882656	1526134	0	+	0.4	(0.378,0.408]	chr3	159005	46	INTRON	INTRON	ATP1B3	ENSG00000069849.11	ENST00000475483.5:ENST00000465172.5:ENST00000286371.8:ENST00000466678.5:ENST00000462082.1:ENST00000495216.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	63	2	2.41037	2.48322	2.55607	0.0100185	0.00704647	0.0880217	0.0718189
chr20	17965415	17965514	7320538	0	-	0.444444	(0.44,0.476]	chr20	745337	26	INTRON	INTRON	SNX5	ENSG00000089006.17	ENST00000377768.7:ENST00000490175.5:ENST00000377759.9:ENST00000431277.5:ENST00000419004.2:ENST00000474883.5:ENST00000469704.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	62	2	2.04674	2.48312	2.9195	0.0102021	0.00803423	0.0850389	0.0803474
chr7	157342955	157343055	3455360	0	+	0.4	(0.378,0.408]	chr7	323052	25	INTRON	INTRON	DNAJB6	ENSG00000105993.15	ENST00000441561.5:ENST00000429029.6:ENST00000262177.9:ENST00000486083.6:ENST00000417758.5:ENST00000459889.5:ENST00000443280.5:ENST00000488001.5:ENST00000441291.5:ENST00000437030.5:ENST00000412557.5:ENST00000453383.5:ENST00000439402.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	77	2	1.42205	2.4830550000000002	3.54406	0.0390695	0.00110718	0.161228	0.0306086
chr9	120762262	120762362	4335146	0	-	0.46	(0.44,0.476]	chr9	398218	54	UTR3	UTR3:EXON_MRNA:INTRON	FBXW2	ENSG00000119402.18	ENST00000493559.1:ENST00000684405.1:ENST00000684001.1:ENST00000684047.1:ENST00000608872.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	170	2	1.78267	2.48299	3.18331	0.00473782	3.73958e-5	0.0634475	0.00522012
chr15	85037012	85037112	6089482	0	+	0.4	(0.378,0.408]	chr15	579504	543	INTRON	INTRON	PDE8A	ENSG00000073417.15	ENST00000310298.8:ENST00000557957.5:ENST00000394553.6:ENST00000339708.9:ENST00000478717.5:ENST00000485596.5:ENST00000559742.5:ENST00000559086.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	46	2	2.29798	2.482915	2.66785	0.0224639	0.0147606	0.11692	0.106702
chr7	40055844	40055944	3311688	0	+	0.39	(0.378,0.408]	chr7	307518	68	INTRON	INTRON	CDK13	ENSG00000065883.17	ENST00000340829.10:ENST00000181839.10:ENST00000613626.4:ENST00000646039.1:ENST00000643859.1:ENST00000484589.2:ENST00000643915.1:ENST00000645470.1:ENST00000642592.1	protein_coding	protein_coding	protein_coding	protein_coding	3	46	2	2.29798	2.482915	2.66785	0.0224639	0.0147606	0.11692	0.106702
chr1	207353011	207353110	303591	0	+	0.434343	(0.408,0.44]	chr1	34932	51	INTRON	INTRON	CD55	ENSG00000196352.18	ENST00000695822.1:ENST00000695823.1:ENST00000695826.1:ENST00000695825.1:ENST00000695827.1:ENST00000645323.1:ENST00000391921.9:ENST00000367064.9:ENST00000314754.12:ENST00000644836.1:ENST00000476590.1:ENST00000465534.5:ENST00000618707.2:ENST00000635614.2:ENST00000695831.1:ENST00000634386.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	16	194	2	2.06517	2.482875	2.90058	5.85537e-4	1.90873e-4	0.0220073	0.0126443
chr2	71420130	71420230	807932	0	+	0.47	(0.44,0.476]	chr2	90291	11	INTRON	INTRON	ZNF638	ENSG00000075292.19	ENST00000409544.5:ENST00000264447.9:ENST00000487638.5:ENST00000494241.5:ENST00000409407.4:ENST00000483421.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	57	2	2.14666	2.4828099999999997	2.81896	0.0120766	0.0116436	0.0962311	0.0889659
chr11	2977783	2977883	4891848	0	-	0.26	[0,0.28]	chr11	458341	1	SS5_PROX	SS5_PROX:INTRON	NAP1L4	ENSG00000205531.13	ENST00000620138.4:ENST00000380542.9:ENST00000526115.5:ENST00000532325.6:ENST00000448187.5:ENST00000399614.6:ENST00000430811.5:ENST00000529361.5:ENST00000528968.5:ENST00000530064.5:ENST00000526842.5:ENST00000531291.5:ENST00000455338.6:ENST00000534372.1	protein_coding	protein_coding	protein_coding	protein_coding	6	122	2	2.47785	2.482785	2.48772	0.0125761	0.00186048	0.0926667	0.039946
chr18	2987962	2988062	6944848	0	-	0.39	(0.378,0.408]	chr18	686840	52	INTRON	INTRON	LPIN2	ENSG00000101577.10	ENST00000261596.8:ENST00000677752.1	protein_coding	protein_coding	protein_coding	protein_coding	3	46	2	2.17608	2.48277	2.78946	0.0218783	0.0158859	0.123836	0.101453
chr20	62908815	62908911	7362273	0	-	0.40625	(0.378,0.408]	chr20	751190	11	INTRON	INTRON	DIDO1	ENSG00000101191.17	ENST00000266070.8:ENST00000395343.6:ENST00000395340.5:ENST00000370371.8:ENST00000370368.5:ENST00000354665.8:ENST00000370366.1	protein_coding	protein_coding	protein_coding	protein_coding	3	46	2	2.17608	2.48277	2.78946	0.0218783	0.0158859	0.123836	0.101453
chr5	141588650	141588750	2739885	0	-	0.38	(0.378,0.408]	chr5	258167	4	SS3_PROX	SS3_PROX:INTRON	DIAPH1	ENSG00000131504.18	ENST00000647433.1:ENST00000389054.8:ENST00000518047.5:ENST00000523100.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	46	2	2.17608	2.48277	2.78946	0.0218783	0.0158859	0.123836	0.101453
chr12	64441797	64441897	5153283	0	+	0.47	(0.44,0.476]	chr12	487839	21	INTRON	INTRON	XPOT	ENSG00000184575.12	ENST00000332707.10	protein_coding	protein_coding	protein_coding	protein_coding	6	82	2	2.29258	2.4827000000000004	2.67282	0.00433875	0.00279559	0.0579868	0.0488779
chr19	34431360	34431460	7053148	0	+	0.5	(0.476,0.515]	chr19	703493	1	SS3_PROX	SS3_PROX:INTRON	UBA2	ENSG00000126261.13	ENST00000607361.5:ENST00000586313.1:ENST00000590048.6:ENST00000246548.9:ENST00000592841.5:ENST00000439527.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	33	2	2.23335	2.4827000000000004	2.73205	0.0634557	0.0159328	0.177047	0.109464
chr18	57604303	57604399	6980524	0	-	0.510417	(0.476,0.515]	chr18	690659	10	INTRON	INTRON	NARS1	ENSG00000134440.12	ENST00000256854.10:ENST00000589314.1:ENST00000586807.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	61	2	1.91368	2.4826	3.05152	0.0135123	0.0064848	0.101363	0.0699952
chr12	121314093	121314193	5436781	0	-	0.52	(0.515,0.57]	chr12	519847	37	INTRON	INTRON	ANAPC5	ENSG00000089053.13	ENST00000261819.8:ENST00000535641.5:ENST00000541887.5:ENST00000534976.5:ENST00000441917.6:ENST00000539079.5:ENST00000544314.5:ENST00000535482.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	46	2	2.06206	2.482585	2.90311	0.0135396	0.0094233	0.101363	0.0817766
chr7	7183419	7183519	3274598	0	+	0.44	(0.408,0.44]	chr7	304569	2	INTRON	INTRON	C1GALT1	ENSG00000106392.11	ENST00000429911.5:ENST00000436587.7:ENST00000467716.1:ENST00000476068.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	69	2	1.85866	2.482535	3.10641	0.0106944	0.00555646	0.091856	0.0648867
chr7	102644089	102644189	3588961	0	-	0.51	(0.476,0.515]	chr7	335089	14	INTRON	INTRON	ENSG00000267645	ENSG00000267645.5	ENST00000476151.5	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	23	310	2	2.30294	2.48252	2.6621	2.33596e-4	1.60059e-5	0.0139888	0.00301954
chr8	144407622	144407721	4085930	0	-	0.454545	(0.44,0.476]	chr8	371910	56	INTRON	INTRON	CPSF1	ENSG00000071894.17	ENST00000616140.2:ENST00000620219.4:ENST00000531042.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	101	2	1.80864	2.4825150000000002	3.15639	0.0107599	3.93757e-4	0.0867043	0.0178567
chr11	43396135	43396230	4776926	0	+	0.294737	(0.28,0.32]	chr11	441715	1	EXON_LNCRNA	EXON_LNCRNA:SS3_PROX:INTRON	TTC17	ENSG00000052841.15	ENST00000039989.9:ENST00000299240.10:ENST00000526774.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	76	2	2.22069	2.4824349999999997	2.74418	0.0243177	0.00328589	0.12011	0.0527031
chr14	101968137	101968236	5820256	0	+	0.50505	(0.476,0.515]	chr14	551975	28	INTRON	INTRON	DYNC1H1	ENSG00000197102.14	ENST00000360184.10:ENST00000684561.1:ENST00000680313.1:ENST00000679720.1:ENST00000680715.1:ENST00000681283.1:ENST00000681822.1:ENST00000679910.1:ENST00000681574.1:ENST00000645039.2:ENST00000645149.2:ENST00000680200.1:ENST00000680120.1:ENST00000644881.2:ENST00000681066.1:ENST00000680423.1:ENST00000681536.1:ENST00000679486.1:ENST00000681010.1:ENST00000679629.1:ENST00000681123.1:ENST00000680874.1:ENST00000680137.1:ENST00000643508.2:ENST00000680808.1:ENST00000681311.1:ENST00000681859.1:ENST00000643684.1:ENST00000643958.2:ENST00000680001.1:ENST00000681668.1:ENST00000645114.2:ENST00000681751.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	33	2	2.47949	2.48238	2.48527	0.03496	0.0326974	0.145164	0.13747500000000001
chr15	28310267	28310367	6123948	0	-	0.49	(0.476,0.515]	chr15	583407	104	INTRON	INTRON	HERC2	ENSG00000128731.18	ENST00000261609.13:ENST00000564734.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	33	2	2.47949	2.48238	2.48527	0.03496	0.0326974	0.145164	0.13747500000000001
chr15	90232540	90232634	6258295	0	-	0.489362	(0.476,0.515]	chr15	597220	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CIB1	ENSG00000185043.13	ENST00000328649.11:ENST00000695870.1:ENST00000612800.1:ENST00000650306.1:ENST00000695872.1:ENST00000695873.1:ENST00000695874.1:ENST00000695875.1:ENST00000695876.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	33	2	2.47949	2.48238	2.48527	0.03496	0.0326974	0.145164	0.13747500000000001
chr16	30936746	30936846	6339784	0	+	0.5	(0.476,0.515]	chr16	608046	58	INTRON	INTRON	FBXL19	ENSG00000099364.18	ENST00000471231.6:ENST00000338343.10:ENST00000562319.7:ENST00000565690.5:ENST00000427128.5	protein_coding	protein_coding	protein_coding	protein_coding	2	33	2	2.47949	2.48238	2.48527	0.03496	0.0326974	0.145164	0.13747500000000001
chr17	75213319	75213419	6674340	0	+	0.5	(0.476,0.515]	chr17	651366	2	SS5_PROX	SS5_PROX:INTRON	NUP85	ENSG00000125450.11	ENST00000583569.5:ENST00000245544.9:ENST00000583948.5:ENST00000579324.5:ENST00000449421.6:ENST00000581104.5:ENST00000579298.5:ENST00000583548.1:ENST00000577208.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	33	2	2.47949	2.48238	2.48527	0.03496	0.0326974	0.145164	0.13747500000000001
chr8	144384420	144384519	3882183	0	+	0.515152	(0.476,0.515]	chr8	356996	8	INTRON	INTRON	ADCK5	ENSG00000173137.12	ENST00000534714.5:ENST00000526231.6:ENST00000533715.2:ENST00000529654.5:ENST00000308860.11:ENST00000532190.2:ENST00000526833.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	33	2	2.47949	2.48238	2.48527	0.03496	0.0326974	0.145164	0.13747500000000001
chr9	136918278	136918375	4222514	0	+	0.505155	(0.476,0.515]	chr9	387839	13	INTRON	INTRON	TRAF2	ENSG00000127191.18	ENST00000247668.7:ENST00000482854.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	33	2	2.47949	2.48238	2.48527	0.03496	0.0326974	0.145164	0.13747500000000001
chr12	120900378	120900478	5435868	0	-	0.52	(0.515,0.57]	chr12	519663	649	INTRON	INTRON	SPPL3	ENSG00000157837.16	ENST00000353487.7:ENST00000536996.5:ENST00000543608.5:ENST00000543854.5	protein_coding	protein_coding	protein_coding	protein_coding	4	46	2	1.81744	2.48237	3.1473	0.031028	0.00397184	0.143457	0.0549214
chr16	9096195	9096295	6285417	0	+	0.41	(0.408,0.44]	chr16	601924	28	INTRON	INTRON	C16orf72	ENSG00000182831.12	ENST00000327827.12:ENST00000574285.2	protein_coding	protein_coding	protein_coding	protein_coding	6	85	2	1.84301	2.48236	3.12171	0.0174311	6.63666e-4	0.112689	0.0234815
chr9	135949996	135950095	4372455	0	-	0.616162	(0.57,1]	chr9	402541	17	INTRON	INTRON	UBAC1	ENSG00000130560.9	ENST00000371756.4:ENST00000478485.1:ENST00000486258.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	43	2	2.161	2.4822550000000003	2.80351	0.00462668	0.00172505	0.062717	0.0374701
chr6	147218459	147218559	2988848	0	+	0.39	(0.378,0.408]	chr6	280001	120	INTRON	INTRON	STXBP5	ENSG00000164506.15	ENST00000321680.11:ENST00000367481.7:ENST00000546097.5:ENST00000367480.7	protein_coding	protein_coding	protein_coding	protein_coding	18	256	2	2.35866	2.48219	2.60572	1.63707e-4	1.35046e-4	0.0110169	0.010622
chr7	138505407	138505507	3435093	0	+	0.36	(0.35,0.378]	chr7	319965	6	INTRON	INTRON	TRIM24	ENSG00000122779.18	ENST00000343526.9:ENST00000415680.6:ENST00000497516.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	108	2	2.41088	2.48207	2.55326	0.0047981	8.63206e-4	0.0602209	0.0266494
chr10	21569880	21569979	4404771	0	+	0.464646	(0.44,0.476]	chr10	406446	117	INTRON	INTRON	MLLT10	ENSG00000078403.17	ENST00000651097.1:ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000650772.1:ENST00000651298.1:ENST00000495130.5:ENST00000377059.7:ENST00000476557.5:ENST00000462999.5:ENST00000430455.2:ENST00000479634.1:ENST00000480415.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	13	175	2	2.44589	2.4820599999999997	2.51823	6.77243e-4	1.69827e-4	0.0238226	0.0113232
chr15	90874982	90875081	6101999	0	+	0.383838	(0.378,0.408]	chr15	581003	15	INTRON	INTRON	FURIN	ENSG00000140564.13	ENST00000268171.8:ENST00000610579.4:ENST00000680053.1:ENST00000618099.4	protein_coding	protein_coding	protein_coding	protein_coding	13	182	2	2.29867	2.4820349999999998	2.6654	4.26082e-4	3.5967e-4	0.0184573	0.0175552
chr19	23795744	23795844	7042763	0	+	0.4	(0.378,0.408]	chr19	702227	84	INTRON	INTRON	RPSAP58	ENSG00000288920.1	ENST00000471224.5:ENST00000692590.1:ENST00000475499.2:ENST00000686829.1:ENST00000689525.1:ENST00000691397.1:ENST00000688405.1:ENST00000687994.1:ENST00000484897.4:ENST00000685490.1:ENST00000462186.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	64	2	1.5653	2.48201	3.39872	0.043739	0.0019852	0.162255	0.0404516
chr22	21762645	21762745	7560325	0	-	0.31	(0.28,0.32]	chr22	773344	31	UTR3	UTR3:EXON_MRNA	MAPK1	ENSG00000100030.15	ENST00000215832.11	protein_coding	protein_coding	protein_coding	protein_coding	43	746	2	2.37458	2.482	2.58942	1.84263e-4	1.14986e-5	0.0123223	0.00250519
chr3	37245821	37245921	1395777	0	+	0.43	(0.408,0.44]	chr3	146306	4	SS5_PROX	SS5_PROX:INTRON	GOLGA4	ENSG00000144674.17	ENST00000435830.6:ENST00000444882.5:ENST00000356847.8:ENST00000450863.6:ENST00000361924.7:ENST00000429018.5:ENST00000431105.1:ENST00000419177.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	101	2	2.26792	2.4819250000000004	2.69593	0.0179973	1.71843e-4	0.106756	0.0113605
chr16	7964238	7964338	6440150	0	-	0.43	(0.408,0.44]	chr16	620339	695	INTRON	INTRON	ENSG00000260289	ENSG00000260289.2	ENST00000670665.1:ENST00000654046.1:ENST00000567103.2	lncRNA	lncRNA	lncRNA	lncRNA	3	46	2	2.21857	2.481875	2.74518	0.0209591	0.0152229	0.112046	0.108535
chr6	27129119	27129217	3072329	0	-	0.387755	(0.378,0.408]	chr6	285574	23	INTRON	INTRON	H2BC11	ENSG00000124635.9	ENST00000607124.1:ENST00000606923.1	protein_coding	protein_coding	protein_coding	protein_coding	11	126	2	1.74499	2.4818350000000002	3.21868	0.00577956	4.53506e-4	0.0684334	0.0196892
chr14	88563893	88563993	5802569	0	+	0.33	(0.32,0.35]	chr14	549654	2	SS5_PROX	SS5_PROX:INTRON	ZC3H14	ENSG00000100722.20	ENST00000302216.12:ENST00000554602.5:ENST00000649731.1:ENST00000553495.5:ENST00000556945.5:ENST00000556158.5:ENST00000557607.5:ENST00000555799.5:ENST00000251038.10:ENST00000555755.5:ENST00000393514.9:ENST00000336693.8:ENST00000557693.5:ENST00000555120.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	52	2	2.45306	2.481835	2.51061	0.0364463	0.00916394	0.138959	0.0855292
chr9	37587343	37587440	4251742	0	-	0.474227	(0.44,0.476]	chr9	391572	8	INTRON	INTRON	TOMM5	ENSG00000175768.13	ENST00000540941.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	5	76	2	1.87325	2.48182	3.09039	0.0265709	7.4601e-4	0.134088	0.0251072
chr7	5200556	5200656	3272065	0	+	0.55	(0.515,0.57]	chr7	304097	5	INTRON	INTRON	WIPI2	ENSG00000157954.15	ENST00000401525.7:ENST00000288828.9:ENST00000404704.7:ENST00000466014.5:ENST00000485854.5:ENST00000382384.6:ENST00000496867.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	74	2	2.20213	2.48181	2.7614899999999998	0.00853365	6.09302e-4	0.0780043	0.0223951
chr8	127997325	127997419	3862103	0	+	0.574468	(0.57,1]	chr8	355504	4	EXON_LNCRNA	EXON_LNCRNA:INTRON	PVT1	ENSG00000249859.13	ENST00000667305.1:ENST00000690350.1:ENST00000653522.1:ENST00000661830.1:ENST00000657289.1:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000657211.1:ENST00000653845.1:ENST00000651587.1:ENST00000692980.1:ENST00000654324.1:ENST00000657693.1:ENST00000666080.1:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000662410.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000654091.1:ENST00000657356.1:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000667714.1:ENST00000654105.1:ENST00000660438.1:ENST00000664995.1:ENST00000670714.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000668123.1:ENST00000666776.1:ENST00000659912.1:ENST00000670532.1:ENST00000523068.2:ENST00000671088.1:ENST00000670204.1:ENST00000663461.1:ENST00000513868.6:ENST00000692433.1:ENST00000523190.7:ENST00000685606.1:ENST00000690788.1:ENST00000685634.1:ENST00000653990.1:ENST00000655783.1:ENST00000656411.1:ENST00000664742.1:ENST00000655099.1:ENST00000662709.1:ENST00000512617.7:ENST00000660122.1:ENST00000666452.1:ENST00000659666.1:ENST00000659892.1:ENST00000521600.5:ENST00000522875.5:ENST00000653497.1:ENST00000668098.1:ENST00000659106.1:ENST00000658840.1:ENST00000666147.1	lncRNA	lncRNA	lncRNA	lncRNA	5	38	2	2.01216	2.481695	2.95123	0.0163389	8.39007e-4	0.101571	0.0263691
chr17	47675368	47675454	6622855	0	+	0.395349	(0.378,0.408]	chr17	646091	2	INTRON	INTRON	KPNB1	ENSG00000108424.11	ENST00000535458.6:ENST00000583648.6:ENST00000290158.9:ENST00000540627.5:ENST00000582097.5:ENST00000677341.1:ENST00000579901.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	9	125	2	2.04984	2.48168	2.91352	0.00321033	4.99779e-4	0.0522684	0.0206993
chr7	123734519	123734619	3632516	0	-	0.27	[0,0.28]	chr7	337581	249	INTRON	INTRON	WASL	ENSG00000106299.8	ENST00000223023.5	protein_coding	protein_coding	protein_coding	protein_coding	9	190	2	1.80301	2.4816149999999997	3.16022	0.0217271	6.49401e-5	0.11491	0.00668837
chr7	42927873	42927959	3523487	0	-	0.406977	(0.378,0.408]	chr7	328591	4	SS3_PROX	SS3_PROX:INTRON	ENSG00000256646:PSMA2	ENSG00000256646.8:ENSG00000106588.12	ENST00000442788.5:ENST00000677234.1:ENST00000677660.1:ENST00000676779.1:ENST00000431882.4:ENST00000677768.1:ENST00000433579.1:ENST00000677581.1:ENST00000223321.9:ENST00000457444.6:ENST00000436986.5:ENST00000678407.1:ENST00000677578.1:ENST00000677139.1:ENST00000445517.1:ENST00000411875.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	56	2	1.58349	2.481595	3.3797	0.0653091	0.00154501	0.180158	0.0362716
chr19	21173660	21173759	7040278	0	+	0.494949	(0.476,0.515]	chr19	701950	34	INTRON	INTRON	ZNF431	ENSG00000196705.8	ENST00000600692.5:ENST00000599296.5:ENST00000594425.5:ENST00000311048.11:ENST00000598331.1	protein_coding	protein_coding	protein_coding	protein_coding	4	55	2	2.01618	2.48155	2.94692	0.0180082	0.00794331	0.106756	0.0797304
chr9	130864334	130864434	4215370	0	+	0.49	(0.476,0.515]	chr9	386448	9	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000318560.6	protein_coding	protein_coding	protein_coding	protein_coding	4	55	2	2.01618	2.48155	2.94692	0.0180082	0.00794331	0.106756	0.0797304
chr22	49651127	49651227	7602599	0	-	0.47	(0.44,0.476]	chr22	778594	237	INTRON	INTRON	MIR3667HG	ENSG00000188511.13	ENST00000414287.5:ENST00000416411.1:ENST00000689875.1:ENST00000400023.5:ENST00000405854.5	lncRNA	lncRNA	lncRNA	lncRNA	5	61	2	1.65297	2.48154	3.31011	0.0331814	0.00259023	0.145918	0.0452934
chr7	139108223	139108323	3656406	0	-	0.46	(0.44,0.476]	chr7	339450	181	INTRON	INTRON	ZC3HAV1	ENSG00000105939.14	ENST00000242351.10:ENST00000464606.5:ENST00000680309.1:ENST00000471652.1	protein_coding	protein_coding	protein_coding	protein_coding	5	61	2	1.65297	2.48154	3.31011	0.0331814	0.00259023	0.145918	0.0452934
chr13	32521998	32522089	5572682	0	-	0.274725	[0,0.28]	chr13	532561	7	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	N4BP2L2	ENSG00000244754.9	ENST00000357505.10:ENST00000399396.7:ENST00000504114.5:ENST00000509076.1:ENST00000446957.6:ENST00000674456.1:ENST00000674161.1:ENST00000674422.1:ENST00000674272.1:ENST00000674452.1:ENST00000674384.1:ENST00000505213.5:ENST00000674219.1:ENST00000267068.5:ENST00000674349.1:ENST00000674428.1:ENST00000503814.2:ENST00000674465.1:ENST00000674421.1:ENST00000674180.1:ENST00000674297.1:ENST00000674293.1:ENST00000674480.1:ENST00000674377.1:ENST00000674437.1:ENST00000674327.1:ENST00000674399.1:ENST00000674196.1:ENST00000674163.1:ENST00000511143.5:ENST00000674484.1:ENST00000475731.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	47	2	2.27119	2.4815300000000002	2.69187	0.070351	0.0221271	0.184298	0.123903
chr2	25830610	25830710	1085057	0	-	0.23	[0,0.28]	chr2	115943	4	SS5_PROX	SS5_PROX:INTRON	ASXL2	ENSG00000143970.18	ENST00000435504.9:ENST00000336112.9:ENST00000497092.1	protein_coding	protein_coding	protein_coding	protein_coding	2	47	2	2.27119	2.4815300000000002	2.69187	0.070351	0.0221271	0.184298	0.123903
chr8	108248215	108248314	4023273	0	-	0.454545	(0.44,0.476]	chr8	367690	49	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	EIF3E	ENSG00000104408.11	ENST00000678042.1:ENST00000678773.1:ENST00000677409.1:ENST00000676892.1:ENST00000523674.2:ENST00000677674.1:ENST00000220849.10:ENST00000678937.1:ENST00000677084.1:ENST00000676706.1:ENST00000518100.6:ENST00000677040.1:ENST00000676698.1:ENST00000522352.6:ENST00000521297.2:ENST00000519030.6:ENST00000519627.2:ENST00000518345.2:ENST00000522445.6:ENST00000678334.1:ENST00000678023.1:ENST00000678797.1:ENST00000677614.1:ENST00000676642.1:ENST00000677965.1:ENST00000678901.1:ENST00000678243.1:ENST00000676663.1:ENST00000679198.1:ENST00000678004.1:ENST00000678881.1:ENST00000677590.1:ENST00000677272.1:ENST00000677746.1:ENST00000677447.1:ENST00000676548.1:ENST00000676487.1:ENST00000521440.6:ENST00000518442.5:ENST00000522887.1:ENST00000518634.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	129	2	1.77947	2.481485	3.1835	0.00926895	6.82077e-5	0.0817766	0.00684369
chr1	1788373	1788470	361796	0	-	0.608247	(0.57,1]	chr1	42248	5	EXON_MRNA	EXON_MRNA:INTRON	GNB1	ENSG00000078369.18	ENST00000610897.4:ENST00000615252.4:ENST00000378609.9:ENST00000461893.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	38	2	2.30825	2.481475	2.6547	0.00499769	0.00346848	0.0617433	0.0539802
chr1	8363632	8363709	369213	0	-	0.337662	(0.32,0.35]	chr1	43422	2	SS5_PROX	SS5_PROX:INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000377464.5:ENST00000400907.6:ENST00000476556.5:ENST00000656437.1	protein_coding	protein_coding	protein_coding	protein_coding	3	52	2	2.01768	2.48139	2.9451	0.0361337	0.011051	0.152563	0.0873897
chr7	73488494	73488593	3554757	0	-	0.515152	(0.476,0.515]	chr7	330783	96	INTRON	INTRON	BAZ1B	ENSG00000009954.11	ENST00000339594.9:ENST00000404251.1	protein_coding	protein_coding	protein_coding	protein_coding	4	53	2	1.86014	2.48139	3.10264	0.0277606	0.00543163	0.137011	0.0645052
chr22	20005767	20005866	7556716	0	-	0.414141	(0.408,0.44]	chr22	772675	146	INTRON	INTRON	ARVCF	ENSG00000099889.14	ENST00000263207.8:ENST00000467828.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	74	2	2.36228	2.48138	2.60048	0.00528443	0.00484324	0.0640618	0.0635846
chr8	31094481	31094580	3728557	0	+	0.424242	(0.408,0.44]	chr8	346610	22	INTRON	INTRON	WRN	ENSG00000165392.11	ENST00000650667.1:ENST00000298139.7:ENST00000521620.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	74	2	2.36228	2.48138	2.60048	0.00528443	0.00484324	0.0640618	0.0635846
chr12	770070	770170	5056352	0	+	0.47	(0.44,0.476]	chr12	477423	154	INTRON	INTRON	WNK1	ENSG00000060237.19	ENST00000315939.11:ENST00000340908.9:ENST00000535572.5:ENST00000537687.5:ENST00000530271.6:ENST00000447667.2	protein_coding	protein_coding	protein_coding	protein_coding	2	33	2	2.29842	2.481375	2.66433	0.0552483	0.0194358	0.165463	0.119831
chr19	3436401	3436501	7000332	0	+	0.47	(0.44,0.476]	chr19	694202	8	INTRON	INTRON	NFIC	ENSG00000141905.19	ENST00000641145.1:ENST00000589123.5:ENST00000395111.7:ENST00000586919.5:ENST00000341919.7:ENST00000443272.3:ENST00000590282.5:ENST00000589537.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	33	2	2.29842	2.481375	2.66433	0.0552483	0.0194358	0.165463	0.119831
chr19	3962863	3962956	7118971	0	-	0.462366	(0.44,0.476]	chr19	716025	12	INTRON	INTRON	DAPK3	ENSG00000167657.14	ENST00000545797.7:ENST00000301264.7	protein_coding	protein_coding	protein_coding	protein_coding	2	33	2	2.29842	2.481375	2.66433	0.0552483	0.0194358	0.165463	0.119831
chr19	4383677	4383776	7119959	0	-	0.474747	(0.44,0.476]	chr19	716283	35	INTRON	INTRON	SH3GL1	ENSG00000141985.9	ENST00000269886.7:ENST00000598564.5:ENST00000417295.6:ENST00000593591.5:ENST00000598219.1	protein_coding	protein_coding	protein_coding	protein_coding	2	33	2	2.29842	2.481375	2.66433	0.0552483	0.0194358	0.165463	0.119831
chr2	167914251	167914351	1258945	0	-	0.47	(0.44,0.476]	chr2	133340	131	INTRON	INTRON	B3GALT1-AS1	ENSG00000235335.3	ENST00000430546.2:ENST00000657553.1:ENST00000670221.1:ENST00000436982.2	lncRNA	lncRNA	lncRNA	lncRNA	2	33	2	2.29842	2.481375	2.66433	0.0552483	0.0194358	0.165463	0.119831
chr3	48977619	48977716	1422068	0	+	0.474227	(0.44,0.476]	chr3	149556	23	INTRON	INTRON	ARIH2	ENSG00000177479.20	ENST00000449376.5:ENST00000490095.5:ENST00000356401.9:ENST00000452385.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	33	2	2.29842	2.481375	2.66433	0.0552483	0.0194358	0.165463	0.119831
chr5	10389535	10389634	2318010	0	+	0.454545	(0.44,0.476]	chr5	224637	21	INTRON	INTRON	MARCHF6	ENSG00000145495.16	ENST00000274140.10:ENST00000449913.6:ENST00000502795.5:ENST00000511802.5:ENST00000503788.5:ENST00000640713.1:ENST00000510872.5:ENST00000507863.1:ENST00000506131.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	33	2	2.29842	2.481375	2.66433	0.0552483	0.0194358	0.165463	0.119831
chr7	75712269	75712368	3560984	0	-	0.464646	(0.44,0.476]	chr7	331784	572	INTRON	INTRON	HIP1	ENSG00000127946.17	ENST00000336926.11:ENST00000434438.6:ENST00000485723.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	33	2	2.29842	2.481375	2.66433	0.0552483	0.0194358	0.165463	0.119831
chrX	154791630	154791699	7915468	0	-	0.434783	(0.408,0.44]	chrX	806161	1	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	MPP1	ENSG00000130830.15	ENST00000369534.8:ENST00000413259.7:ENST00000439370.5:ENST00000393531.5:ENST00000453245.5:ENST00000494170.1:ENST00000462825.5:ENST00000393529.5:ENST00000475943.5:ENST00000428488.1:ENST00000417435.5:ENST00000488694.1:ENST00000369531.1:ENST00000471821.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	21	287	2	2.34274	2.481305	2.61987	3.06708e-4	2.079e-5	0.0161362	0.00353137
chr1	32839730	32839828	66792	0	+	0.44898	(0.44,0.476]	chr1	8569	27	INTRON	INTRON	S100PBP	ENSG00000116497.18	ENST00000373476.5:ENST00000531123.5:ENST00000373475.10	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	33	2	2.38219	2.48126	2.58033	0.045456	0.0247511	0.149888	0.131869
chr10	70673863	70673959	4447336	0	+	0.447917	(0.44,0.476]	chr10	410360	6	INTRON	INTRON	ADAMTS14	ENSG00000138316.11	ENST00000373207.2:ENST00000373208.5	protein_coding	protein_coding	protein_coding	protein_coding	2	33	2	2.38219	2.48126	2.58033	0.045456	0.0247511	0.149888	0.131869
chr12	121903107	121903207	5238327	0	+	0.46	(0.44,0.476]	chr12	497287	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	PSMD9	ENSG00000110801.14	ENST00000537407.5:ENST00000540962.5:ENST00000261817.6:ENST00000542602.1:ENST00000541212.6:ENST00000543699.5:ENST00000535293.5:ENST00000544724.5:ENST00000544254.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	33	2	2.38219	2.48126	2.58033	0.045456	0.0247511	0.149888	0.131869
chr13	98572394	98572494	5643746	0	-	0.46	(0.44,0.476]	chr13	537505	505	INTRON	INTRON	STK24	ENSG00000102572.15	ENST00000539966.6:ENST00000397517.6:ENST00000491878.5:ENST00000481288.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	33	2	2.38219	2.48126	2.58033	0.045456	0.0247511	0.149888	0.131869
chr15	43360588	43360685	6160794	0	-	0.463918	(0.44,0.476]	chr15	586603	26	UTR3	UTR3:EXON_MRNA	ZSCAN29	ENSG00000140265.14	ENST00000396976.6:ENST00000684362.1	protein_coding	protein_coding	protein_coding	protein_coding	2	33	2	2.38219	2.48126	2.58033	0.045456	0.0247511	0.149888	0.131869
chr2	23985231	23985331	707536	0	+	0.46	(0.44,0.476]	chr2	81968	4	SS5_PROX	SS5_PROX:INTRON	UBXN2A	ENSG00000173960.14	ENST00000446425.2:ENST00000404924.5:ENST00000309033.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	33	2	2.38219	2.48126	2.58033	0.045456	0.0247511	0.149888	0.131869
chr3	72414212	72414311	1745597	0	-	0.30303	(0.28,0.32]	chr3	177368	337	INTRON	INTRON	RYBP	ENSG00000163602.12	ENST00000477973.5	protein_coding	protein_coding	protein_coding	protein_coding	3	58	2	2.32871	2.48125	2.63379	0.0581621	0.00503861	0.167723	0.0646039
chr12	91589135	91589235	5385108	0	-	0.41	(0.408,0.44]	chr12	513485	819	INTRON	INTRON	ENSG00000289605	ENSG00000289605.1	ENST00000685093.1	lncRNA	lncRNA	lncRNA	lncRNA	4	60	2	2.26792	2.4812450000000004	2.69457	0.0179973	0.00331036	0.106756	0.0527031
chr9	136810512	136810612	4221768	0	+	0.41	(0.408,0.44]	chr9	387668	18	INTRON	INTRON	RABL6	ENSG00000196642.19	ENST00000371671.9:ENST00000311502.12:ENST00000484471.6:ENST00000371663.10:ENST00000357466.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	60	2	2.26792	2.4812450000000004	2.69457	0.0179973	0.00331036	0.106756	0.0527031
chr10	68064493	68064592	4637838	0	-	0.414141	(0.408,0.44]	chr10	426436	196	INTRON	INTRON	HERC4	ENSG00000148634.16	ENST00000373700.9:ENST00000412272.6:ENST00000395198.7:ENST00000473533.6:ENST00000427635.6:ENST00000513996.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	45	2	2.00228	2.481175	2.96007	0.0389732	0.00753901	0.143072	0.0773151
chr3	172046413	172046512	1559611	0	+	0.414141	(0.408,0.44]	chr3	161523	54	INTRON	INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000421757.5:ENST00000469491.5:ENST00000336824.8:ENST00000423424.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	45	2	2.00228	2.481175	2.96007	0.0389732	0.00753901	0.143072	0.0773151
chr4	1906654	1906753	1910930	0	+	0.424242	(0.408,0.44]	chr4	191747	19	INTRON	INTRON	NSD2	ENSG00000109685.19	ENST00000508803.6:ENST00000508355.5:ENST00000514045.5:ENST00000398261.6:ENST00000382891.9:ENST00000353275.9:ENST00000382892.6:ENST00000382895.7:ENST00000312087.10:ENST00000420906.6:ENST00000503128.5:ENST00000509115.5:ENST00000677559.1:ENST00000512700.2:ENST00000678714.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	45	2	2.00228	2.481175	2.96007	0.0389732	0.00753901	0.143072	0.0773151
chr17	21010650	21010750	6742831	0	-	0.28	[0,0.28]	chr17	662023	1	SS5_PROX	SS5_PROX:INTRON	USP22	ENSG00000124422.12	ENST00000261497.9:ENST00000537526.6:ENST00000455117.6:ENST00000579645.5:ENST00000478443.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	168	2	1.82309	2.48116	3.13923	0.0072459	0.00131862	0.0756327	0.0331539
chr19	43587648	43587747	7187433	0	-	0.535354	(0.515,0.57]	chr19	727431	34	UTR3	UTR3:EXON_MRNA:INTRON	IRGQ	ENSG00000167378.10	ENST00000422989.6:ENST00000602269.2:ENST00000601520.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	63	2	2.00468	2.48097	2.9572600000000002	0.0166344	0.00108918	0.110511	0.0303873
chr2	15516748	15516848	1072716	0	-	0.33	(0.32,0.35]	chr2	114441	50	INTRON	INTRON	NBAS	ENSG00000151779.13	ENST00000281513.10	protein_coding	protein_coding	protein_coding	protein_coding	6	79	2	1.72098	2.480925	3.24087	0.0192903	0.00420518	0.119831	0.0572185
chrX	139916226	139916326	7905737	0	-	0.28	[0,0.28]	chrX	804457	841	INTRON	INTRON	ATP11C	ENSG00000101974.15	ENST00000370557.5:ENST00000682941.1:ENST00000485626.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	48	2	2.36637	2.480925	2.59548	0.0500615	0.0346067	0.17488	0.136649
chr2	96368671	96368771	830549	0	+	0.43	(0.408,0.44]	chr2	92878	3	SS3_PROX	SS3_PROX:INTRON	NCAPH	ENSG00000121152.10	ENST00000240423.9:ENST00000427946.5:ENST00000455200.5:ENST00000435349.1	protein_coding	protein_coding	protein_coding	protein_coding	3	45	2	2.44674	2.48083	2.51492	0.0329839	0.00868283	0.133816	0.0842798
chr8	102835568	102835661	4012942	0	-	0.462366	(0.44,0.476]	chr8	367300	2	INTRON	INTRON	AZIN1	ENSG00000155096.15	ENST00000681985.1:ENST00000684566.1:ENST00000682725.1:ENST00000337198.10:ENST00000684459.1:ENST00000683787.1:ENST00000682014.1:ENST00000682969.1:ENST00000684721.1:ENST00000683965.1:ENST00000347770.8:ENST00000521536.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	54	2	2.22103	2.48083	2.74063	0.0176095	0.00776319	0.105143	0.0787356
chr1	234606938	234607037	661464	0	-	0.252525	[0,0.28]	chr1	78268	28	UTR3	UTR3:EXON_MRNA	IRF2BP2	ENSG00000168264.11	ENST00000366609.4:ENST00000366610.7	protein_coding	protein_coding	protein_coding	protein_coding	12	233	2	2.30965	2.48082	2.65199	0.00154741	7.98946e-4	0.035796	0.0258804
chr1	225993599	225993696	646401	0	-	0.298969	(0.28,0.32]	chr1	76601	2	INTRON	INTRON	SDE2	ENSG00000143751.10	ENST00000272091.8	protein_coding	protein_coding	protein_coding	protein_coding	9	140	2	1.68939	2.4808	3.27221	0.0172148	3.15212e-4	0.104099	0.0159645
chr5	65933900	65934000	2370917	0	+	0.48	(0.476,0.515]	chr5	228472	67	INTRON	INTRON	ERBIN	ENSG00000112851.15	ENST00000380943.6:ENST00000507490.1:ENST00000416865.6:ENST00000380935.5:ENST00000284037.10:ENST00000380938.6:ENST00000511297.5:ENST00000506030.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	14	184	2	1.88424	2.48079	3.07734	0.00370373	1.61201e-5	0.0535094	0.00303526
chr10	11993988	11994087	4557288	0	-	0.313131	(0.28,0.32]	chr10	420588	145	INTRON	INTRON	UPF2	ENSG00000151461.20	ENST00000357604.10:ENST00000356352.6:ENST00000397053.6	protein_coding	protein_coding	protein_coding	protein_coding	6	86	2	1.52982	2.4806999999999997	3.43158	0.0379288	0.00244075	0.157212	0.0445752
chr10	73748667	73748764	4453780	0	+	0.474227	(0.44,0.476]	chr10	411062	13	INTRON	INTRON	SEC24C	ENSG00000176986.16	ENST00000345254.9:ENST00000465076.5:ENST00000339365.2:ENST00000635550.1:ENST00000477008.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	60	2	2.13779	2.48065	2.82351	0.0264596	0.00191049	0.122506	0.0403772
chr22	19118034	19118133	7551971	0	-	0.545455	(0.515,0.57]	chr22	771903	282	INTRON	INTRON	DGCR2	ENSG00000070413.20	ENST00000537045.5:ENST00000545799.5:ENST00000263196.12:ENST00000389262.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	52	2	2.32836	2.48043	2.6325	0.0126662	0.00439001	0.0982897	0.0585064
chr3	52683305	52683400	1700748	0	-	0.452632	(0.44,0.476]	chr3	175065	7	INTRON	INTRON	PBRM1	ENSG00000163939.18	ENST00000394830.7:ENST00000431678.5:ENST00000420148.5:ENST00000449505.5:ENST00000450271.5:ENST00000439181.5:ENST00000458294.5:ENST00000424867.1	protein_coding	protein_coding	protein_coding	protein_coding	4	60	2	2.44514	2.48034	2.51554	0.0087381	0.00777207	0.0845538	0.0757731
chr17	50395876	50395973	6795138	0	-	0.453608	(0.44,0.476]	chr17	670759	5	INTRON	INTRON	LRRC59	ENSG00000108829.10	ENST00000225972.8	protein_coding	protein_coding	protein_coding	protein_coding	4	56	2	2.07016	2.480315	2.89047	0.0151815	0.00955699	0.0994339	0.0863913
chr6	161087287	161087387	3025462	0	+	0.37	(0.35,0.378]	chr6	282368	2	SS3_PROX	SS3_PROX:INTRON	MAP3K4	ENSG00000085511.20	ENST00000366919.6:ENST00000392142.9:ENST00000366920.6:ENST00000348824.11:ENST00000544041.5:ENST00000490904.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	58	2	2.07049	2.48026	2.89003	0.0140397	0.0122391	0.102801	0.0910127
chr16	2754442	2754542	6279834	0	+	0.54	(0.515,0.57]	chr16	600760	4	INTRON	INTRON	SRRM2	ENSG00000167978.17	ENST00000576924.5:ENST00000301740.13:ENST00000575009.5:ENST00000576894.5:ENST00000575701.4:ENST00000630499.2:ENST00000576415.5:ENST00000571378.5:ENST00000574340.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	104	2	1.83953	2.48022	3.12091	0.00755489	1.0674e-4	0.0773151	0.00924854
chr8	100704054	100704135	4005392	0	-	0.271605	[0,0.28]	chr8	366566	1	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	PABPC1	ENSG00000070756.17	ENST00000518293.5:ENST00000677140.1:ENST00000677787.1:ENST00000678709.1:ENST00000676662.1:ENST00000677765.1:ENST00000677892.1:ENST00000522720.2:ENST00000520804.2:ENST00000521865.6:ENST00000677478.1:ENST00000677380.1:ENST00000520142.2:ENST00000677775.1:ENST00000678954.1:ENST00000676655.1:ENST00000676976.1:ENST00000678290.1:ENST00000318607.10:ENST00000520868.5:ENST00000679197.1:ENST00000519100.6:ENST00000519004.5:ENST00000677285.1:ENST00000522387.5:ENST00000523636.5:ENST00000517990.5:ENST00000522658.6:ENST00000678822.1:ENST00000523555.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	202	2	2.37629	2.4802049999999998	2.58412	0.00202946	0.00110115	0.04086	0.03038
chr1	184864570	184864670	601948	0	-	0.28	[0,0.28]	chr1	71742	323	INTRON	INTRON	NIBAN1	ENSG00000135842.17	ENST00000367511.4:ENST00000487074.5:ENST00000461167.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	66	2	2.33055	2.4802	2.62985	0.062338	0.00581422	0.175343	0.068681
chr4	75643936	75644036	2161788	0	-	0.39	(0.378,0.408]	chr4	212947	22	UTR3	UTR3:EXON_MRNA	G3BP2	ENSG00000138757.15	ENST00000676666.1:ENST00000678062.1:ENST00000678100.1:ENST00000678122.1:ENST00000677265.1:ENST00000678971.1:ENST00000679281.1:ENST00000677333.1:ENST00000676470.1:ENST00000677620.1:ENST00000677606.1:ENST00000678798.1:ENST00000677583.1:ENST00000678447.1:ENST00000678875.1:ENST00000678244.1:ENST00000676974.1:ENST00000677003.1:ENST00000677889.1:ENST00000678329.1:ENST00000676584.1:ENST00000678552.1:ENST00000677192.1:ENST00000677727.1:ENST00000678265.1:ENST00000676839.1:ENST00000677876.1:ENST00000678123.1:ENST00000678578.1:ENST00000677171.1:ENST00000679329.1:ENST00000677794.1:ENST00000395719.7:ENST00000359707.9:ENST00000677060.1:ENST00000679294.1:ENST00000677201.1:ENST00000677952.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	77	2	1.38218	2.480195	3.57821	0.0444424	9.60401e-4	0.162728	0.0282401
chr16	85800783	85800883	6416650	0	+	0.54	(0.515,0.57]	chr16	615580	2	SS3_PROX	SS3_PROX:INTRON	COX4I1	ENSG00000131143.10	ENST00000565078.5:ENST00000570123.5:ENST00000568339.5:ENST00000566115.5:ENST00000567241.5:ENST00000568794.5:ENST00000562336.5:ENST00000253452.8:ENST00000563774.1:ENST00000561569.5:ENST00000567266.5:ENST00000566405.5:ENST00000564544.1:ENST00000566617.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	29	2	2.35125	2.48012	2.60899	0.0436431	0.0232669	0.162255	0.118148
chr17	48628344	48628443	6791553	0	-	0.545455	(0.515,0.57]	chr17	670064	21	INTRON	INTRON	HOXB7	ENSG00000260027.5	ENST00000567101.2	protein_coding	processed_transcript	protein_coding	processed_transcript	2	29	2	2.35125	2.48012	2.60899	0.0436431	0.0232669	0.162255	0.118148
chr5	154437626	154437724	2755989	0	-	0.530612	(0.515,0.57]	chr5	259913	9	INTRON	INTRON	SAP30L-AS1	ENSG00000245275.8	ENST00000658072.1:ENST00000519727.5:ENST00000652933.1:ENST00000524264.6:ENST00000652895.1:ENST00000501280.4	lncRNA	lncRNA	lncRNA	lncRNA	2	29	2	2.35125	2.48012	2.60899	0.0436431	0.0232669	0.162255	0.118148
chr7	5602059	5602159	3272512	0	+	0.53	(0.515,0.57]	chr7	304171	68	INTRON	INTRON	FSCN1	ENSG00000075618.18	ENST00000382361.8:ENST00000444748.5:ENST00000447103.5:ENST00000405801.2	protein_coding	protein_coding	protein_coding	protein_coding	2	29	2	2.35125	2.48012	2.60899	0.0436431	0.0232669	0.162255	0.118148
chr9	97515364	97515464	4171725	0	+	0.52	(0.515,0.57]	chr9	380069	132	INTRON	INTRON	TMOD1	ENSG00000136842.14	ENST00000395211.6:ENST00000259365.9	protein_coding	protein_coding	protein_coding	protein_coding	2	29	2	2.35125	2.48012	2.60899	0.0436431	0.0232669	0.162255	0.118148
chr11	47170730	47170827	4948844	0	-	0.484536	(0.476,0.515]	chr11	463893	13	INTRON	INTRON	ARFGAP2	ENSG00000149182.15	ENST00000426335.6:ENST00000627920.2:ENST00000524782.6:ENST00000395449.7:ENST00000533243.5:ENST00000527776.5:ENST00000526342.5:ENST00000527927.5:ENST00000532478.5:ENST00000532438.5:ENST00000529455.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	54	2	1.88582	2.48002	3.07422	0.0273268	0.00506023	0.123904	0.0646039
chr10	124757736	124757835	4712200	0	-	0.353535	(0.35,0.378]	chr10	434793	16	UTR3	UTR3:EXON_MRNA:INTRON	EEF1AKMT2	ENSG00000203791.15	ENST00000495711.2:ENST00000652548.1:ENST00000466270.5:ENST00000368836.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	65	2	2.28125	2.4799949999999997	2.67874	0.0182271	0.00373022	0.107842	0.0561984
chr5	179827106	179827205	2561720	0	+	0.555556	(0.515,0.57]	chr5	245049	15	INTRON	INTRON	SQSTM1	ENSG00000161011.20	ENST00000389805.9:ENST00000510187.5:ENST00000360718.5:ENST00000466342.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	92	2	1.96678	2.47997	2.99316	0.00296583	9.21623e-4	0.0500431	0.0278396
chr14	34457896	34457996	5866094	0	-	0.48	(0.476,0.515]	chr14	557089	222	INTRON	INTRON	EGLN3:SPTSSA	ENSG00000129521.15:ENSG00000165389.7	ENST00000551935.5:ENST00000298130.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	60	2	2.37731	2.47992	2.58253	0.0111793	0.00600101	0.0937192	0.0674604
chr7	99413759	99413858	3361782	0	+	0.50505	(0.476,0.515]	chr7	313940	14	INTRON	INTRON	BUD31	ENSG00000106245.11	ENST00000403633.6:ENST00000427499.5:ENST00000222969.10:ENST00000496696.5:ENST00000471813.1:ENST00000456893.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	60	2	2.37731	2.47992	2.58253	0.0111793	0.00600101	0.0937192	0.0674604
chr16	29521476	29521575	6470780	0	-	0.484848	(0.476,0.515]	chr16	625147	156	INTRON	INTRON	ENSG00000288632	ENSG00000288632.1	ENST00000675579.1	lncRNA	lncRNA	lncRNA	lncRNA	3	44	2	2.13304	2.479885	2.82673	0.024866	0.0134403	0.132101	0.0946278
chr2	238022172	238022271	1051105	0	+	0.515152	(0.476,0.515]	chr2	111758	52	INTRON	INTRON	UBE2F	ENSG00000184182.19	ENST00000440223.5:ENST00000441728.6:ENST00000414443.5:ENST00000272930.9:ENST00000409633.5:ENST00000416292.5:ENST00000448502.5:ENST00000455999.5:ENST00000417231.5:ENST00000445676.5:ENST00000439338.5:ENST00000439780.5:ENST00000454786.5:ENST00000433241.5:ENST00000409953.5:ENST00000409332.5:ENST00000612130.4:ENST00000434655.5:ENST00000434137.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	44	2	2.13304	2.479885	2.82673	0.024866	0.0134403	0.132101	0.0946278
chr12	124783005	124783102	5445757	0	-	0.546392	(0.515,0.57]	chr12	521219	3	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	SCARB1	ENSG00000073060.17	ENST00000339570.9:ENST00000261693.11:ENST00000679605.1:ENST00000681686.1:ENST00000680926.1:ENST00000680556.1:ENST00000680982.1:ENST00000680596.1:ENST00000681555.1:ENST00000681788.1:ENST00000415380.6:ENST00000681117.1:ENST00000681499.1:ENST00000545305.1:ENST00000538291.5:ENST00000546215.5:ENST00000535005.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	29	328	2	2.46891	2.47981	2.49071	5.21089e-5	1.00014e-5	0.00628247	0.0022993
chr6	4054058	4054156	2790037	0	+	0.438776	(0.408,0.44]	chr6	263541	8	INTRON	INTRON	PRPF4B	ENSG00000112739.17	ENST00000480058.5:ENST00000337659.11:ENST00000481109.5:ENST00000463634.6:ENST00000466185.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	73	2	1.83501	2.479795	3.12458	0.0323448	4.61817e-4	0.133003	0.0194611
chr4	39899625	39899725	2131406	0	-	0.47	(0.44,0.476]	chr4	210169	4	INTRON	INTRON	PDS5A	ENSG00000121892.15	ENST00000303538.13:ENST00000503396.5	protein_coding	protein_coding	protein_coding	protein_coding	3	45	2	2.46135	2.47979	2.49823	0.0374637	0.00718224	0.140008	0.0756118
chrX	20208488	20208587	7772818	0	-	0.464646	(0.44,0.476]	chrX	794551	40	INTRON	INTRON	RPS6KA3	ENSG00000177189.14	ENST00000379565.9:ENST00000643085.1:ENST00000645270.1:ENST00000643402.1:ENST00000644368.1:ENST00000647265.1:ENST00000645268.1:ENST00000457145.6:ENST00000643073.1:ENST00000646610.1:ENST00000643337.1:ENST00000642835.1:ENST00000644893.1:ENST00000474266.1:ENST00000438357.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	45	2	2.46135	2.47979	2.49823	0.0374637	0.00718224	0.140008	0.0756118
chr20	38434103	38434203	7342306	0	-	0.51	(0.476,0.515]	chr20	748331	2	SS5_PROX	SS5_PROX:INTRON	SNHG17	ENSG00000196756.14	ENST00000654008.2:ENST00000658076.1:ENST00000662982.2:ENST00000456953.7:ENST00000654183.2:ENST00000663540.2:ENST00000651115.2:ENST00000660885.2:ENST00000662213.1:ENST00000665233.2:ENST00000666268.2:ENST00000665735.1:ENST00000660558.2:ENST00000691280.1:ENST00000658488.2:ENST00000688336.1:ENST00000668054.2:ENST00000690441.1:ENST00000655520.2:ENST00000687490.1:ENST00000664626.1:ENST00000658051.1:ENST00000668042.1:ENST00000686971.1:ENST00000657868.1:ENST00000689917.1:ENST00000664073.2:ENST00000653697.1:ENST00000656320.1:ENST00000686814.1:ENST00000417578.7:ENST00000436764.7:ENST00000668482.2:ENST00000671249.1:ENST00000693250.1:ENST00000691368.1:ENST00000693227.1:ENST00000690361.1:ENST00000670051.1:ENST00000667912.1:ENST00000693665.1:ENST00000665181.1:ENST00000687532.1:ENST00000691386.1:ENST00000693684.1:ENST00000666331.1:ENST00000669480.1:ENST00000658905.1:ENST00000661252.1:ENST00000669137.1:ENST00000688133.1:ENST00000689414.1:ENST00000691314.1:ENST00000669033.1:ENST00000686145.1:ENST00000656023.1:ENST00000692262.1:ENST00000414142.5:ENST00000670958.1:ENST00000657216.2:ENST00000664636.1:ENST00000657843.1:ENST00000666419.1:ENST00000413755.5:ENST00000424235.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	7	113	2	1.63962	2.479785	3.31995	0.0346854	4.9394e-5	0.148144	0.00608708
chr6	31806074	31806142	3079926	0	-	0.441176	(0.44,0.476]	chr6	287271	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	LSM2	ENSG00000204392.11	ENST00000375661.6:ENST00000477182.5:ENST00000470086.5:ENST00000470083.5:ENST00000493387.5:ENST00000491421.5:ENST00000475835.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	68	2	1.44993	2.479735	3.50954	0.045367	0.00116647	0.164236	0.0312127
chr12	120464943	120465034	5433974	0	-	0.417582	(0.408,0.44]	chr12	519506	1	SS3_PROX	SS3_PROX:INTRON	SRSF9	ENSG00000111786.9	ENST00000229390.8:ENST00000603963.1:ENST00000550458.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	46	2	1.85305	2.47973	3.10641	0.0543543	0.00555646	0.182243	0.0648867
chr17	81564266	81564361	6848849	0	-	0.421053	(0.408,0.44]	chr17	678121	4	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	NPLOC4	ENSG00000182446.14	ENST00000331134.11:ENST00000572760.5:ENST00000572346.5:ENST00000573519.5:ENST00000573876.1:ENST00000571714.5:ENST00000572824.1:ENST00000573212.5:ENST00000576713.6:ENST00000374747.9:ENST00000576940.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	46	2	1.85305	2.47973	3.10641	0.0543543	0.00555646	0.182243	0.0648867
chr22	21785859	21785959	7560562	0	-	0.51	(0.476,0.515]	chr22	773360	125	INTRON	INTRON	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	8	109	2	2.39638	2.479645	2.56291	0.00222582	9.14515e-4	0.0421176	0.027804
chr2	131090025	131090124	1229059	0	-	0.606061	(0.57,1]	chr2	130994	70	INTRON	INTRON	FAM168B	ENSG00000152102.18	ENST00000389915.4:ENST00000409185.5	protein_coding	protein_coding	protein_coding	protein_coding	8	57	2	2.19706	2.4795800000000003	2.7621000000000002	0.00202095	5.29607e-4	0.04086	0.0207276
chr4	138211489	138211589	2245519	0	-	0.38	(0.378,0.408]	chr4	219484	259	INTRON	INTRON	SLC7A11	ENSG00000151012.13	ENST00000280612.9:ENST00000509248.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	75	2	2.30961	2.47941	2.64921	0.055088	4.93004e-4	0.165463	0.0200992
chr15	80063524	80063623	6071071	0	+	0.414141	(0.408,0.44]	chr15	578304	24	INTRON	INTRON	ZFAND6	ENSG00000086666.19	ENST00000613266.4:ENST00000561060.5:ENST00000559157.5:ENST00000261749.11:ENST00000561012.5:ENST00000564367.5:ENST00000558494.5:ENST00000618205.4:ENST00000560470.5	protein_coding	protein_coding	protein_coding	protein_coding	7	92	2	1.70477	2.4793	3.2538299999999998	0.0215835	2.37059e-4	0.114814	0.0136195
chr16	23887775	23887875	6324278	0	+	0.45	(0.44,0.476]	chr16	605697	186	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000645517.1:ENST00000498739.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	86	2	2.2543	2.479255	2.70421	0.00787184	9.23275e-4	0.076155	0.0278392
chr17	82468263	82468341	6692361	0	+	0.448718	(0.44,0.476]	chr17	654562	1	SS3_PROX	SS3_PROX:INTRON	NARF	ENSG00000141562.19	ENST00000579198.5:ENST00000390006.8:ENST00000583181.5:ENST00000584192.5:ENST00000580296.5:ENST00000345415.11:ENST00000581202.5:ENST00000374611.9:ENST00000457415.7:ENST00000581795.5:ENST00000584411.5:ENST00000577812.5:ENST00000581743.5:ENST00000577432.5:ENST00000582907.5:ENST00000309794.16:ENST00000578082.5:ENST00000580748.1:ENST00000577410.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	19	258	2	2.31116	2.47925	2.64734	5.8568e-4	1.72195e-5	0.0224393	0.0031587
chr20	63196411	63196510	7362581	0	-	0.282828	(0.28,0.32]	chr20	751220	11	UTR3	UTR3:EXON_MRNA	YTHDF1	ENSG00000149658.18	ENST00000370339.8:ENST00000370334.4	protein_coding	protein_coding	protein_coding	protein_coding	5	77	2	1.79739	2.4792	3.16101	0.0224995	0.0061861	0.124921	0.0677395
chr13	51963489	51963587	5596425	0	-	0.469388	(0.44,0.476]	chr13	534946	12	INTRON	INTRON	ATP7B	ENSG00000123191.16	ENST00000242839.10:ENST00000344297.9:ENST00000674147.1:ENST00000448424.7:ENST00000634620.1:ENST00000634296.1:ENST00000400370.8:ENST00000634844.1:ENST00000673772.1:ENST00000634308.1:ENST00000418097.7:ENST00000400366.6:ENST00000635406.1:ENST00000482841.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	45	2	1.93084	2.4791749999999997	3.02751	0.0443175	0.00715968	0.162302	0.0723634
chr6	143504082	143504167	3242470	0	-	0.447059	(0.44,0.476]	chr6	301189	3	CDS	CDS:EXON_MRNA:INTRON	FUCA2	ENSG00000001036.14	ENST00000002165.11:ENST00000367585.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	45	2	1.93084	2.4791749999999997	3.02751	0.0443175	0.00715968	0.162302	0.0723634
chr7	97127891	97127991	3357060	0	+	0.46	(0.44,0.476]	chr7	313205	96	INTRON	INTRON	SDHAF3	ENSG00000196636.8	ENST00000432641.3:ENST00000489852.1:ENST00000360382.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	45	2	1.93084	2.4791749999999997	3.02751	0.0443175	0.00715968	0.162302	0.0723634
chr7	44830850	44830944	3528506	0	-	0.521277	(0.515,0.57]	chr7	329101	3	INTRON	INTRON	H2AZ2	ENSG00000105968.19	ENST00000222690.10:ENST00000437072.5	protein_coding	protein_coding	protein_coding	protein_coding	4	47	2	1.60221	2.4791499999999997	3.35609	0.0581855	0.00174131	0.188704	0.0375363
chr11	11893005	11893104	4736071	0	+	0.222222	[0,0.28]	chr11	438627	5	INTRON	INTRON	USP47	ENSG00000170242.19	ENST00000339865.9:ENST00000527733.7:ENST00000399455.2	protein_coding	protein_coding	protein_coding	protein_coding	2	47	2	2.20927	2.47914	2.74901	0.0794763	0.0188843	0.19979	0.118148
chr17	82571223	82571323	6693125	0	+	0.28	[0,0.28]	chr17	654647	1	SS3_PROX	SS3_PROX:INTRON	FOXK2	ENSG00000141568.21	ENST00000473637.6:ENST00000335255.10:ENST00000527313.6:ENST00000570585.1:ENST00000531030.5:ENST00000526383.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	47	2	2.20927	2.47914	2.74901	0.0794763	0.0188843	0.19979	0.118148
chr8	52674774	52674873	3950703	0	-	0.232323	[0,0.28]	chr8	362355	1	INTRON	INTRON	RB1CC1	ENSG00000023287.13	ENST00000025008.10:ENST00000435644.6:ENST00000521611.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	47	2	2.20927	2.47914	2.74901	0.0794763	0.0188843	0.19979	0.118148
chr16	22500277	22500377	6322608	0	+	0.39	(0.378,0.408]	chr16	605439	81	INTRON	INTRON	NPIPB5	ENSG00000243716.11	ENST00000415654.5:ENST00000415833.6:ENST00000546168.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	46	2	2.35527	2.479115	2.60296	0.0267851	0.0121511	0.123349	0.0963966
chr3	120086763	120086863	1795382	0	-	0.39	(0.378,0.408]	chr3	180290	5	INTRON	INTRON	GSK3B	ENSG00000082701.17	ENST00000264235.13:ENST00000316626.6:ENST00000678439.1:ENST00000650344.2:ENST00000677788.1:ENST00000678245.1:ENST00000677169.1:ENST00000677128.1:ENST00000677530.1:ENST00000677034.1:ENST00000676743.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	46	2	2.35527	2.479115	2.60296	0.0267851	0.0121511	0.123349	0.0963966
chr7	151501068	151501168	3674737	0	-	0.3	(0.28,0.32]	chr7	341207	25	INTRON	INTRON	RHEB	ENSG00000106615.10	ENST00000262187.10:ENST00000472642.5:ENST00000478470.5:ENST00000496004.5:ENST00000470370.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	80	2	2.17818	2.47911	2.78004	0.0193244	0.00555379	0.108861	0.0675078
chr11	3362073	3362167	4893674	0	-	0.351064	(0.35,0.378]	chr11	458668	1	EXON_MRNA	EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ZNF195	ENSG00000005801.18	ENST00000528796.5:ENST00000399602.9:ENST00000354599.10:ENST00000343338.11:ENST00000620374.4:ENST00000649622.1:ENST00000429541.6:ENST00000005082.13:ENST00000526601.5:ENST00000438262.6:ENST00000528410.5:ENST00000528218.5:ENST00000529789.5:ENST00000525313.6:ENST00000533036.5:ENST00000529228.5:ENST00000526540.5:ENST00000529678.5:ENST00000526598.1:ENST00000528636.1:ENST00000427810.6:ENST00000534569.5:ENST00000524857.5:ENST00000530643.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	36	2	2.1617	2.4790650000000003	2.79643	0.0771502	0.013543	0.196285	0.101363
chr16	67792549	67792649	6505543	0	-	0.36	(0.35,0.378]	chr16	629654	201	INTRON	INTRON	RANBP10	ENSG00000141084.12	ENST00000317506.8:ENST00000448631.6:ENST00000602506.5:ENST00000602677.5:ENST00000602525.5:ENST00000602638.5:ENST00000602815.5:ENST00000602887.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	36	2	2.1617	2.4790650000000003	2.79643	0.0771502	0.013543	0.196285	0.101363
chr16	70149249	70149348	6383809	0	+	0.373737	(0.35,0.378]	chr16	613553	3	INTRON	INTRON	PDPR	ENSG00000090857.14	ENST00000288050.9:ENST00000568530.5:ENST00000398122.7:ENST00000565186.5:ENST00000562100.5:ENST00000569042.5:ENST00000567046.5:ENST00000563930.5:ENST00000564563.1:ENST00000567896.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	36	2	2.1617	2.4790650000000003	2.79643	0.0771502	0.013543	0.196285	0.101363
chr7	152144312	152144412	3678292	0	-	0.36	(0.35,0.378]	chr7	341377	2	SS5_PROX	SS5_PROX:INTRON	KMT2C	ENSG00000055609.21	ENST00000360104.8:ENST00000262189.11:ENST00000418061.2:ENST00000680877.1:ENST00000424877.6:ENST00000679560.1:ENST00000682040.1:ENST00000683640.1:ENST00000682116.1:ENST00000683120.1:ENST00000681923.1:ENST00000679393.1:ENST00000683200.1:ENST00000684768.1:ENST00000680029.1:ENST00000683337.1:ENST00000682629.1:ENST00000683178.1:ENST00000682137.1:ENST00000683502.1:ENST00000684261.1:ENST00000682283.1:ENST00000473186.5:ENST00000684649.1:ENST00000679882.1:ENST00000683621.1:ENST00000679567.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	36	2	2.1617	2.4790650000000003	2.79643	0.0771502	0.013543	0.196285	0.101363
chr1	30948444	30948542	411699	0	-	0.438776	(0.408,0.44]	chr1	49633	26	INTRON	INTRON	PUM1	ENSG00000134644.16	ENST00000426105.7:ENST00000373747.7:ENST00000257075.9:ENST00000424085.6:ENST00000525843.5:ENST00000440538.6:ENST00000498419.5:ENST00000373741.8:ENST00000373742.6:ENST00000529846.5:ENST00000525997.1:ENST00000527498.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	72	2	2.46587	2.479025	2.49218	0.00855168	0.00280622	0.0780217	0.0488779
chr7	101848155	101848255	3366670	0	+	0.39	(0.378,0.408]	chr7	315215	288	INTRON	INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000497815.5:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000607092.1:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000558469.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	56	2	1.53052	2.47901	3.4275	0.0744544	0.00126053	0.192012	0.03295
chr15	66658366	66658466	6051545	0	+	0.42	(0.408,0.44]	chr15	576221	758	INTRON	INTRON	LINC01169	ENSG00000259471.1	ENST00000558797.1	lncRNA	lncRNA	lncRNA	lncRNA	4	60	2	2.21857	2.47899	2.73941	0.0209591	0.002744	0.112046	0.0484022
chr16	89480050	89480150	6543497	0	-	0.43	(0.408,0.44]	chr16	634281	484	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	60	2	2.21857	2.47899	2.73941	0.0209591	0.002744	0.112046	0.0484022
chr2	171710670	171710769	917941	0	+	0.434343	(0.408,0.44]	chr2	101104	29	INTRON	INTRON	DYNC1I2	ENSG00000077380.16	ENST00000340296.8:ENST00000452242.5:ENST00000397119.8:ENST00000410079.7:ENST00000438879.5:ENST00000508530.5:ENST00000409197.5:ENST00000456808.5:ENST00000409317.5:ENST00000409773.5:ENST00000411953.5:ENST00000409453.5:ENST00000445378.5:ENST00000435234.5:ENST00000443458.5:ENST00000412370.5:ENST00000425485.5:ENST00000423910.5:ENST00000430778.5:ENST00000422646.1:ENST00000482454.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	60	2	2.21857	2.47899	2.73941	0.0209591	0.002744	0.112046	0.0484022
chr3	37329175	37329257	1396631	0	+	0.231707	[0,0.28]	chr3	146420	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	GOLGA4	ENSG00000144674.17	ENST00000444882.5:ENST00000356847.8:ENST00000361924.7:ENST00000437131.1:ENST00000498250.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	47	2	2.38757	2.47895	2.57033	0.0552962	0.0305273	0.165463	0.143385
chr7	149488616	149488716	3671742	0	-	0.46	(0.44,0.476]	chr7	340778	11	UTR3	UTR3:EXON_MRNA:INTRON	ZNF746	ENSG00000181220.18	ENST00000644635.1:ENST00000340622.8:ENST00000458143.7:ENST00000685153.1:ENST00000461958.2	protein_coding	protein_coding	protein_coding	protein_coding	6	83	2	2.09333	2.4789250000000003	2.86452	0.00776307	0.00159222	0.0757646	0.0367961
chr10	96880204	96880304	4503445	0	+	0.36	(0.35,0.378]	chr10	414536	214	INTRON	INTRON	LCOR	ENSG00000196233.14	ENST00000676067.1:ENST00000676257.1:ENST00000676187.1:ENST00000675151.1:ENST00000675687.1:ENST00000675251.1:ENST00000676123.1:ENST00000371103.8:ENST00000675471.1:ENST00000421806.4:ENST00000675902.1:ENST00000540664.6:ENST00000676414.1:ENST00000675537.1:ENST00000675117.1:ENST00000675125.1:ENST00000356016.7:ENST00000371097.8:ENST00000676381.1:ENST00000674796.1:ENST00000674725.1:ENST00000675971.1:ENST00000676373.1:ENST00000676314.1:ENST00000675915.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	49	2	2.09331	2.47891	2.86451	0.0315717	0.0109111	0.13151	0.0923273
chr2	95851394	95851493	1178269	0	-	0.373737	(0.35,0.378]	chr2	125730	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ANKRD36C	ENSG00000174501.15	ENST00000612359.4:ENST00000295246.7:ENST00000456556.5	protein_coding	protein_coding	protein_coding	protein_coding	3	49	2	2.09331	2.47891	2.86451	0.0315717	0.0109111	0.13151	0.0923273
chr9	131152793	131152893	4215907	0	+	0.56	(0.515,0.57]	chr9	386591	5	INTRON	INTRON	NUP214	ENSG00000126883.19	ENST00000695497.1:ENST00000695498.1:ENST00000695496.1:ENST00000695495.1:ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000651022.1:ENST00000525980.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	22	249	2	2.4062	2.4788750000000004	2.55155	6.83183e-5	3.96407e-5	0.00732297	0.00510383
chr1	1473983	1474083	1587	0	+	0.56	(0.515,0.57]	chr1	364	15	INTRON	INTRON	ATAD3B	ENSG00000160072.20	ENST00000673477.1:ENST00000308647.8	protein_coding	protein_coding	protein_coding	protein_coding	4	51	2	2.38476	2.4788699999999997	2.57298	0.0110593	0.00506495	0.0873897	0.0646039
chr14	101891174	101891269	5819816	0	+	0.515789	(0.515,0.57]	chr14	551905	5	INTRON	INTRON	PPP2R5C	ENSG00000078304.20	ENST00000694906.1:ENST00000422945.6:ENST00000328724.9:ENST00000350249.7:ENST00000557621.5:ENST00000334743.9:ENST00000445439.7:ENST00000557095.5:ENST00000554137.5:ENST00000556218.5:ENST00000557534.1:ENST00000557716.2:ENST00000556805.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	51	2	2.38476	2.4788699999999997	2.57298	0.0110593	0.00506495	0.0873897	0.0646039
chr6	31838488	31838580	2843872	0	+	0.456522	(0.44,0.476]	chr6	267918	7	INTRON	INTRON	SNHG32	ENSG00000204387.14	ENST00000375640.7:ENST00000375641.6:ENST00000375635.6:ENST00000375638.7:ENST00000648677.1:ENST00000375642.6:ENST00000614363.4:ENST00000395789.5:ENST00000375633.5:ENST00000395788.3	lncRNA	lncRNA	lncRNA	lncRNA	7	114	2	2.03266	2.4788699999999997	2.92508	0.0155853	1.60775e-4	0.109411	0.0116076
chr2	159275145	159275245	1249383	0	-	0.39	(0.378,0.408]	chr2	132481	2	SS5_PROX	SS5_PROX:INTRON	WDSUB1	ENSG00000196151.11	ENST00000359774.9:ENST00000358147.8:ENST00000409990.7:ENST00000392796.7:ENST00000409124.1	protein_coding	protein_coding	protein_coding	protein_coding	3	46	2	2.11103	2.4788300000000003	2.84663	0.0266911	0.0133954	0.134419	0.0946278
chrX	73832301	73832377	7837844	0	-	0.407895	(0.378,0.408]	chrX	799600	2	INTRON	INTRON	XIST	ENSG00000229807.13	ENST00000669898.1:ENST00000650627.1:ENST00000434839.3:ENST00000421322.3:ENST00000429829.6:ENST00000647913.2:ENST00000647696.1:ENST00000650366.1:ENST00000648607.1:ENST00000650548.1:ENST00000650186.1:ENST00000635841.2:ENST00000650637.1:ENST00000648970.1:ENST00000648991.1:ENST00000648927.2:ENST00000666309.1:ENST00000665247.1:ENST00000445814.2:ENST00000602495.1:ENST00000602863.2	lncRNA	lncRNA	lncRNA	lncRNA	3	46	2	2.11103	2.4788300000000003	2.84663	0.0266911	0.0133954	0.134419	0.0946278
chr1	207646129	207646229	303955	0	+	0.42	(0.408,0.44]	chr1	34988	4	INTRON	INTRON	CR1L	ENSG00000197721.17	ENST00000531844.5:ENST00000508064.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	60	2	2.40661	2.47882	2.55103	0.011475	0.00587353	0.0888882	0.0690758
chr4	6708265	6708360	2102606	0	-	0.431579	(0.408,0.44]	chr4	208196	7	UTR3	UTR3:EXON_MRNA	MRFAP1L1	ENSG00000178988.11	ENST00000320848.7:ENST00000500563.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	60	2	2.40661	2.47882	2.55103	0.011475	0.00587353	0.0888882	0.0690758
chr1	246121999	246122099	676852	0	-	0.28	[0,0.28]	chr1	79721	257	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000391836.3:ENST00000453676.5:ENST00000462422.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	88	2	1.71089	2.47874	3.24659	0.0318277	0.00570201	0.14477	0.0656459
chr9	131450991	131451091	4217549	0	+	0.26	[0,0.28]	chr9	386766	28	INTRON	INTRON	PRRC2B	ENSG00000288701.1	ENST00000684596.1:ENST00000683519.1:ENST00000682501.1	protein_coding	protein_coding	protein_coding	protein_coding	3	64	2	2.05756	2.4786900000000003	2.89982	0.0352544	0.0158893	0.150301	0.101453
chr14	73999458	73999557	5921475	0	-	0.585859	(0.57,1]	chr14	562471	23	INTRON	INTRON	ENTPD5	ENSG00000187097.13	ENST00000557325.5:ENST00000334696.11:ENST00000556242.5:ENST00000554664.5:ENST00000556108.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	29	2	1.92756	2.478615	3.02967	0.0220439	0.00471306	0.115395	0.0631419
chr1	19091142	19091240	385505	0	-	0.367347	(0.35,0.378]	chr1	45644	18	INTRON	INTRON	UBR4	ENSG00000127481.15	ENST00000375254.8:ENST00000375224.1	protein_coding	protein_coding	protein_coding	protein_coding	2	36	2	2.47065	2.4786099999999998	2.48657	0.0386172	0.032907	0.145164	0.142656
chr17	55044011	55044106	6629400	0	+	0.357895	(0.35,0.378]	chr17	647615	5	UTR3	UTR3:EXON_MRNA:INTRON	STXBP4	ENSG00000166263.13	ENST00000376352.6:ENST00000405898.5:ENST00000434978.6:ENST00000398391.6	protein_coding	protein_coding	protein_coding	protein_coding	2	36	2	2.47065	2.4786099999999998	2.48657	0.0386172	0.032907	0.145164	0.142656
chrX	66235210	66235309	7673416	0	+	0.353535	(0.35,0.378]	chrX	785355	266	INTRON	INTRON	HEPH	ENSG00000089472.18	ENST00000519389.6:ENST00000683049.1:ENST00000458621.6:ENST00000684042.1:ENST00000343002.7:ENST00000336279.9:ENST00000441993.7:ENST00000419594.6:ENST00000682362.1:ENST00000425114.2:ENST00000682927.1:ENST00000683420.1:ENST00000684071.1:ENST00000684625.1:ENST00000684603.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	36	2	2.47065	2.4786099999999998	2.48657	0.0386172	0.032907	0.145164	0.142656
chr7	139400075	139400172	3437999	0	+	0.28866000000000003	(0.28,0.32]	chr7	320347	10	INTRON	INTRON	LUC7L2:FMC1-LUC7L2	ENSG00000146963.18:ENSG00000269955.2	ENST00000541170.7:ENST00000541515.3:ENST00000619796.4:ENST00000354926.9:ENST00000456182.5:ENST00000263545.7:ENST00000463912.5:ENST00000498518.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	87	2	2.45545	2.478535	2.50162	0.0438092	0.0013622	0.14901	0.0339121
chr22	47718901	47719001	7540237	0	+	0.49	(0.476,0.515]	chr22	770719	78	INTRON	INTRON	ENSG00000224271	ENSG00000224271.7	ENST00000664761.1:ENST00000651071.1:ENST00000650683.1:ENST00000651536.1:ENST00000652499.1:ENST00000652656.1:ENST00000652072.1:ENST00000651445.1:ENST00000423737.5:ENST00000650660.1:ENST00000651056.1:ENST00000652611.1:ENST00000652399.1:ENST00000652123.1:ENST00000651311.1:ENST00000651458.1:ENST00000652505.1:ENST00000652702.2:ENST00000652334.1:ENST00000652030.2:ENST00000651403.1:ENST00000652228.1:ENST00000651124.1:ENST00000650972.1:ENST00000651985.1:ENST00000651637.1:ENST00000650924.1:ENST00000651003.1:ENST00000652168.1:ENST00000651948.2:ENST00000651293.1:ENST00000651939.1:ENST00000650787.1:ENST00000651517.1:ENST00000651662.1:ENST00000652690.1:ENST00000651638.1:ENST00000670853.1:ENST00000652750.1:ENST00000652080.1:ENST00000651294.1:ENST00000652164.1:ENST00000651538.1:ENST00000650775.1:ENST00000651983.1:ENST00000651033.1:ENST00000651584.1:ENST00000650884.1:ENST00000651270.1	lncRNA	lncRNA	lncRNA	lncRNA	5	71	2	2.37448	2.478505	2.58253	0.00600101	0.00419067	0.0674604	0.0591344
chr10	69169401	69169491	4445010	0	+	0.3	(0.28,0.32]	chr10	410060	4	INTRON	INTRON	VPS26A	ENSG00000122958.15	ENST00000373382.5:ENST00000395098.5:ENST00000263559.11:ENST00000490696.5:ENST00000489794.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	70	2	2.38504	2.478495	2.57195	0.0331711	0.00475871	0.133994	0.0636201
chr16	85804242	85804341	6416686	0	+	0.515152	(0.476,0.515]	chr16	615587	13	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	COX4I1	ENSG00000131143.10	ENST00000565078.5:ENST00000570123.5:ENST00000568339.5:ENST00000566115.5:ENST00000567241.5:ENST00000568794.5:ENST00000562336.5:ENST00000253452.8:ENST00000563774.1:ENST00000561569.5:ENST00000567266.5:ENST00000566405.5:ENST00000564544.1:ENST00000566617.1:ENST00000564903.1:ENST00000564648.1:ENST00000569997.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	71	2	2.3346	2.4784800000000002	2.62236	0.00517	0.00494807	0.0646039	0.0631506
chr5	139570497	139570597	2500595	0	+	0.48	(0.476,0.515]	chr5	239026	77	INTRON	INTRON	UBE2D2	ENSG00000131508.16	ENST00000511725.5:ENST00000505007.5:ENST00000398733.8:ENST00000510470.1:ENST00000398734.8:ENST00000505548.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	71	2	2.3346	2.4784800000000002	2.62236	0.00517	0.00494807	0.0646039	0.0631506
chr7	101827972	101828072	3366468	0	+	0.49	(0.476,0.515]	chr7	315215	86	INTRON	INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000497815.5:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000607092.1:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000558469.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	91	2	1.84672	2.478465	3.11021	0.0126682	5.02606e-4	0.0926667	0.020217099999999998
chr13	91353717	91353817	5516847	0	+	0.32	(0.28,0.32]	chr13	527585	4	SS3_PROX	SS3_PROX:INTRON	MIR17HG	ENSG00000215417.13	ENST00000400282.6:ENST00000664987.1	lncRNA	lncRNA	lncRNA	lncRNA	22	384	2	1.90224	2.4783850000000003	3.05453	0.0016526	2.49604e-5	0.0375516	0.00412342
chr19	42209199	42209299	7185992	0	-	0.46	(0.44,0.476]	chr19	727054	1	SS5_PROX	SS5_PROX:INTRON	DEDD2	ENSG00000160570.14	ENST00000596251.6:ENST00000336034.8:ENST00000595337.5:ENST00000593804.5:ENST00000601135.5:ENST00000598415.5:ENST00000602075.5:ENST00000600559.5:ENST00000598090.5:ENST00000598727.5:ENST00000593561.5:ENST00000602201.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	45	2	2.13779	2.4783749999999998	2.81896	0.0264596	0.0120766	0.122506	0.0962311
chr2	10149230	10149330	690995	0	+	0.51	(0.476,0.515]	chr2	81105	32	INTRON	INTRON	RRM2	ENSG00000171848.16	ENST00000641498.1:ENST00000646978.1:ENST00000381786.7	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	7	98	2	2.2344	2.47834	2.72228	0.00432475	8.52725e-4	0.0579331	0.0264928
chr1	54368203	54368303	463379	0	-	0.48	(0.476,0.515]	chr1	55784	115	INTRON	INTRON	SSBP3	ENSG00000157216.16	ENST00000610401.5:ENST00000357475.9:ENST00000371319.8:ENST00000417664.7:ENST00000533946.6:ENST00000371320.8:ENST00000525990.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	110	2	2.04194	2.4782450000000003	2.91455	0.00499341	4.32026e-4	0.0646039	0.0190829
chr22	20493217	20493317	7557505	0	-	0.43	(0.408,0.44]	chr22	772822	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	KLHL22	ENSG00000099910.17	ENST00000328879.9:ENST00000479601.5:ENST00000451553.1:ENST00000444967.5:ENST00000458248.5:ENST00000443285.5:ENST00000494929.5:ENST00000431430.1:ENST00000470335.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	11	153	2	2.26055	2.47824	2.69593	0.00154265	1.71843e-4	0.0357086	0.0113605
chr3	198190101	198190189	1600063	0	+	0.477273	(0.476,0.515]	chr3	165889	4	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	FAM157A	ENSG00000236438.7	ENST00000634862.1:ENST00000615155.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	25	338	2	2.40216	2.4781899999999997	2.55422	9.29056e-5	3.37318e-5	0.00857086	0.0046443
chrX	136912348	136912447	7727489	0	+	0.454545	(0.44,0.476]	chrX	790754	22	INTRON	INTRON	TM9SF5P	ENSG00000234062.9	ENST00000650669.2:ENST00000687469.1:ENST00000431464.6:ENST00000685550.1:ENST00000685929.1:ENST00000424306.5:ENST00000687978.1:ENST00000688713.1:ENST00000693626.1:ENST00000686432.1:ENST00000693698.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	6	71	2	1.69823	2.47812	3.25801	0.0218548	0.00248185	0.11491	0.0460771
chr7	111410099	111410199	3622587	0	-	0.41	(0.408,0.44]	chr7	337108	173	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000452895.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding	5	73	2	2.13157	2.47809	2.82461	0.0109031	0.00241819	0.0923273	0.0442901
chr1	90007244	90007344	160811	0	+	0.3	(0.28,0.32]	chr1	17319	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	ZNF326	ENSG00000162664.17	ENST00000340281.9:ENST00000394583.7:ENST00000370447.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	56	2	2.38391	2.47793	2.57195	0.0331711	0.0122525	0.133994	0.0969406
chr16	23958217	23958317	6324983	0	+	0.45	(0.44,0.476]	chr16	605701	645	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000498739.1	protein_coding	protein_coding	protein_coding	protein_coding	3	46	2	2.29126	2.477795	2.66433	0.0194358	0.0165638	0.119831	0.102621
chr4	55410315	55410415	1960734	0	+	0.41	(0.408,0.44]	chr4	196553	66	INTRON	INTRON	TMEM165	ENSG00000134851.13	ENST00000381334.10:ENST00000506198.5:ENST00000508404.5:ENST00000511710.1:ENST00000502797.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	124	2	2.39349	2.4777199999999997	2.56195	0.00467273	2.05556e-4	0.0600108	0.0124557
chr15	90214836	90214936	6098236	0	+	0.36	(0.35,0.378]	chr15	580427	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	SEMA4B	ENSG00000185033.15	ENST00000559322.5:ENST00000559300.5:ENST00000561085.1:ENST00000332496.10:ENST00000558895.5:ENST00000559792.5:ENST00000411539.7:ENST00000560089.5:ENST00000558051.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	48	2	2.23043	2.4777	2.72497	0.0198266	0.0187487	0.117523	0.109608
chr18	51060613	51060712	6901938	0	+	0.373737	(0.35,0.378]	chr18	683881	3	INTRON	INTRON	SMAD4	ENSG00000141646.15	ENST00000398417.6:ENST00000342988.8:ENST00000611848.2:ENST00000588745.5:ENST00000592186.5:ENST00000591126.5:ENST00000684953.1:ENST00000688307.1:ENST00000688903.1:ENST00000688574.1:ENST00000685232.1:ENST00000685090.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	48	2	2.23043	2.4777	2.72497	0.0198266	0.0187487	0.117523	0.109608
chr2	55384178	55384278	1124034	0	-	0.31	(0.28,0.32]	chr2	120560	89	INTRON	INTRON	CCDC88A	ENSG00000115355.18	ENST00000263630.13:ENST00000436346.7:ENST00000336838.10:ENST00000642200.1:ENST00000413716.7:ENST00000643413.1:ENST00000647401.1:ENST00000645311.1:ENST00000646796.1:ENST00000645571.1:ENST00000645477.1:ENST00000645072.1:ENST00000644890.1:ENST00000644630.1:ENST00000647098.1:ENST00000646324.1:ENST00000642890.1:ENST00000647517.1:ENST00000645031.1:ENST00000645484.1:ENST00000645529.1:ENST00000644033.1:ENST00000644193.1:ENST00000645168.1:ENST00000647341.1:ENST00000430086.1:ENST00000644127.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	56	2	2.08149	2.477655	2.87382	0.031124	0.014868	0.143644	0.0989021
chr3	47724729	47724829	1684500	0	-	0.48	(0.476,0.515]	chr3	172088	36	INTRON	INTRON	SMARCC1	ENSG00000173473.11	ENST00000254480.10:ENST00000425518.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	53	2	2.06898	2.47764	2.8863	0.0137491	0.0111679	0.10247	0.0877435
chrX	123873037	123873137	7716316	0	+	0.51	(0.476,0.515]	chrX	789403	121	INTRON	INTRON	XIAP	ENSG00000101966.13	ENST00000422098.5:ENST00000481776.5:ENST00000434753.7:ENST00000497906.5:ENST00000468691.5:ENST00000430625.1:ENST00000371199.8:ENST00000497640.1:ENST00000355640.3:ENST00000468503.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	84	2	2.41121	2.47758	2.54395	0.0110342	8.361e-4	0.0873897	0.0263691
chr22	21689701	21689796	7482705	0	+	0.505263	(0.476,0.515]	chr22	763393	10	EXON_MRNA	EXON_MRNA:INTRON	PPIL2	ENSG00000100023.20	ENST00000679795.1:ENST00000679540.1:ENST00000679580.1:ENST00000681286.1:ENST00000680061.1:ENST00000681338.1:ENST00000681956.1:ENST00000679827.1:ENST00000679534.1:ENST00000679479.1:ENST00000680393.1:ENST00000680426.1:ENST00000335025.12:ENST00000498109.2:ENST00000398831.8:ENST00000681394.1:ENST00000679477.1:ENST00000626352.2:ENST00000417788.5:ENST00000681791.1:ENST00000679692.1:ENST00000680962.1:ENST00000679857.1:ENST00000680094.1:ENST00000680434.1:ENST00000680109.1:ENST00000406385.1:ENST00000681137.1:ENST00000680860.1:ENST00000680183.1:ENST00000446951.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	136	2	2.16452	2.4774599999999998	2.7904	0.00229906	2.22294e-4	0.0428247	0.0131029
chr16	88661241	88661341	6539310	0	-	0.33	(0.32,0.35]	chr16	633757	4	SS3_PROX	SS3_PROX:INTRON	MVD	ENSG00000167508.12	ENST00000301012.8:ENST00000569177.5:ENST00000567064.5:ENST00000568133.5:ENST00000563785.5:ENST00000568709.5:ENST00000563170.5:ENST00000565610.5:ENST00000563463.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	102	2	2.06533	2.47745	2.88957	0.0174225	4.39424e-4	0.10453	0.0189185
chr8	140989829	140989929	4079964	0	-	0.51	(0.476,0.515]	chr8	370590	53	INTRON	INTRON	PTK2	ENSG00000169398.20	ENST00000696786.1:ENST00000522684.5:ENST00000395218.3:ENST00000521059.5:ENST00000519993.5:ENST00000340930.7:ENST00000524357.5:ENST00000521791.5:ENST00000523067.5:ENST00000520828.5:ENST00000519881.5:ENST00000520892.5:ENST00000517453.5:ENST00000520045.5:ENST00000521332.5:ENST00000524040.5:ENST00000523679.1:ENST00000524257.5:ENST00000523797.1:ENST00000519635.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	53	2	1.80284	2.47743	3.15202	0.033161	0.00455841	0.145899	0.0595107
chr1	164438	164526	352953	0	-	0.5	(0.476,0.515]	chr1	40816	3	EXON_LNCRNA	EXON_LNCRNA	ENSG00000241860	ENSG00000241860.7	ENST00000466557.6	lncRNA	lncRNA	lncRNA	lncRNA	15	193	2	2.07536	2.477365	2.87937	8.45594e-4	9.30291e-5	0.0263978	0.00857086
chr1	167957049	167957149	248693	0	+	0.33	(0.32,0.35]	chr1	29542	48	INTRON	INTRON	DCAF6	ENSG00000143164.16	ENST00000450548.5:ENST00000470919.5:ENST00000432587.6:ENST00000367843.7:ENST00000470721.5:ENST00000367840.4:ENST00000312263.10:ENST00000455334.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	62	2	1.83315	2.477305	3.12146	0.0313348	0.00630799	0.144381	0.0687526
chr22	17894783	17894883	7549359	0	-	0.29	(0.28,0.32]	chr22	771701	1	SS5_PROX	SS5_PROX:INTRON	MICAL3	ENSG00000243156.9	ENST00000441493.7:ENST00000672019.1:ENST00000400561.6:ENST00000495076.5:ENST00000414725.6:ENST00000383094.7:ENST00000461307.5:ENST00000585038.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	68	2	1.60343	2.477255	3.35108	0.0669889	0.00221345	0.183051	0.0435144
chr6	7285622	7285721	3053103	0	-	0.393939	(0.378,0.408]	chr6	283931	46	UTR3	UTR3:EXON_MRNA:INTRON	SSR1	ENSG00000124783.14	ENST00000474597.5:ENST00000650389.1:ENST00000475213.1:ENST00000244763.9	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	183	2	2.14429	2.4772299999999996	2.81017	0.00100501	1.67372e-4	0.0292285	0.0118839
chr12	104457829	104457929	5210692	0	+	0.6	(0.57,1]	chr12	493314	3	SS5_PROX	SS5_PROX:INTRON	CHST11	ENSG00000171310.11	ENST00000303694.6:ENST00000547956.1:ENST00000549260.5:ENST00000546689.1	protein_coding	protein_coding	protein_coding	protein_coding	3	24	2	2.17026	2.477175	2.78409	0.0220522	0.0116033	0.123836	0.0889104
chr16	15007182	15007282	6305463	0	+	0.58	(0.57,1]	chr16	603298	2	INTRON	INTRON	PDXDC1	ENSG00000179889.20	ENST00000563679.5:ENST00000535621.6:ENST00000396410.9:ENST00000455313.6:ENST00000562119.5:ENST00000570001.5:ENST00000569715.5:ENST00000627450.2:ENST00000565362.5:ENST00000567306.5:ENST00000450288.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	24	2	2.17026	2.477175	2.78409	0.0220522	0.0116033	0.123836	0.0889104
chr9	37175721	37175821	4118212	0	+	0.33	(0.32,0.35]	chr9	375384	156	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000322831.6:ENST00000461038.5:ENST00000488607.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	147	2	2.14374	2.47715	2.81056	0.0048878	2.50479e-4	0.0608499	0.0140705
chr11	124625001	124625101	4881166	0	+	0.42	(0.408,0.44]	chr11	456187	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	TBRG1	ENSG00000154144.13	ENST00000473629.6:ENST00000530731.5:ENST00000441174.8:ENST00000531667.5:ENST00000284290.8:ENST00000452080.5:ENST00000529543.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	84	2	2.45003	2.4771349999999996	2.50424	0.00990006	0.00101099	0.0838372	0.0293364
chrX	41335790	41335887	7645660	0	+	0.360825	(0.35,0.378]	chrX	782485	7	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	DDX3X	ENSG00000215301.11	ENST00000625837.2:ENST00000626301.2:ENST00000629785.2:ENST00000630255.2:ENST00000630370.2:ENST00000630858.2:ENST00000629496.3:ENST00000610559.5:ENST00000611546.2:ENST00000478993.5:ENST00000457138.7:ENST00000643821.1:ENST00000644876.2:ENST00000399959.7:ENST00000644074.1:ENST00000645338.1:ENST00000646196.1:ENST00000642793.1:ENST00000646940.1:ENST00000644307.1:ENST00000645561.1:ENST00000645080.1:ENST00000642597.1:ENST00000642722.1:ENST00000644109.1:ENST00000644958.1:ENST00000646122.1:ENST00000644513.1:ENST00000645589.1:ENST00000441189.4:ENST00000646822.1:ENST00000631641.2:ENST00000615742.4:ENST00000647219.1:ENST00000480592.6:ENST00000646223.1:ENST00000643963.1:ENST00000646319.1:ENST00000645783.1:ENST00000642624.1:ENST00000542215.5:ENST00000644073.1:ENST00000644677.1:ENST00000615313.5:ENST00000622373.1:ENST00000642322.1:ENST00000622198.5:ENST00000645120.1:ENST00000646107.1:ENST00000646627.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	109	2	2.32476	2.47713	2.6295	0.00343673	0.00142732	0.0517761	0.0347139
chr16	74449100	74449198	6523717	0	-	0.44898	(0.44,0.476]	chr16	631695	18	UTR3	UTR3:EXON_MRNA	GLG1	ENSG00000090863.12	ENST00000205061.9:ENST00000422840.7	protein_coding	protein_coding	protein_coding	protein_coding	7	91	2	1.892	2.4771099999999997	3.06222	0.00935701	8.483e-4	0.0858596	0.0267232
chrX	114047460	114047560	7868516	0	-	0.4	(0.378,0.408]	chrX	801557	46	INTRON	INTRON	XACT	ENSG00000241743.4	ENST00000468762.3:ENST00000649506.1	lncRNA	lncRNA	lncRNA	lncRNA	11	163	2	2.17179	2.477075	2.78236	0.00178023	1.94405e-4	0.039274	0.0127418
chr13	19709141	19709241	5552201	0	-	0.31	(0.28,0.32]	chr13	530691	2	SS5_PROX	SS5_PROX:INTRON	PSPC1	ENSG00000121390.19	ENST00000471658.5:ENST00000492741.5:ENST00000635562.1:ENST00000338910.9:ENST00000619300.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	15	265	2	2.2582	2.4770149999999997	2.69583	0.00246061	4.81189e-5	0.0446195	0.00566695
chr3	9454799	9454898	1359506	0	+	0.252525	[0,0.28]	chr3	142803	3	INTRON	INTRON	SETD5	ENSG00000168137.20	ENST00000402198.7:ENST00000682536.1:ENST00000663774.1:ENST00000665872.1:ENST00000666307.1:ENST00000693430.1:ENST00000691925.1:ENST00000684606.1:ENST00000691175.1:ENST00000443339.5:ENST00000406341.5:ENST00000670063.1:ENST00000684055.1:ENST00000407969.5:ENST00000493918.5:ENST00000399686.6:ENST00000413704.5:ENST00000691988.1:ENST00000466242.5:ENST00000682236.1:ENST00000488236.5:ENST00000421188.1:ENST00000478961.6:ENST00000476740.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	90	2	2.0939	2.47699	2.86008	0.0177015	0.00875794	0.105304	0.0846118
chr9	15500383	15500482	4235977	0	-	0.545455	(0.515,0.57]	chr9	389324	78	INTRON	INTRON	PSIP1	ENSG00000164985.15	ENST00000380738.8:ENST00000380733.9:ENST00000380716.8:ENST00000380715.5:ENST00000397519.6:ENST00000487363.5:ENST00000463712.6:ENST00000488797.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	116	2	2.38176	2.47699	2.57222	7.54337e-4	4.87669e-4	0.0251179	0.0199693
chr5	134209219	134209319	2726523	0	-	0.38	(0.378,0.408]	chr5	256558	27	INTRON	INTRON	PPP2CA	ENSG00000113575.10	ENST00000481195.6:ENST00000522385.1:ENST00000523082.1:ENST00000231504.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	64	2	1.39189	2.476985	3.56208	0.0751636	6.94246e-4	0.193731	0.0240761
chr12	133050886	133050986	5252711	0	+	0.4	(0.378,0.408]	chr12	499682	3	SS5_PROX	SS5_PROX:INTRON	ZNF84	ENSG00000198040.11	ENST00000392319.6:ENST00000543758.5:ENST00000540031.5:ENST00000539354.6:ENST00000327668.11:ENST00000542874.5:ENST00000535439.2:ENST00000543124.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	64	2	1.48005	2.47691	3.47377	0.0596711	0.00103087	0.168954	0.0294094
chr20	17943778	17943876	7320301	0	-	0.336735	(0.32,0.35]	chr20	745269	7	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	SNX5	ENSG00000089006.17	ENST00000377768.7:ENST00000490175.5:ENST00000483485.5:ENST00000377759.9:ENST00000606570.1:ENST00000491090.5:ENST00000476648.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	71	2	1.63843	2.47688	3.31533	0.0360919	0.00323121	0.152563	0.0507087
chr1	113080334	113080434	188165	0	+	0.39	(0.378,0.408]	chr1	20854	63	INTRON	INTRON	LRIG2	ENSG00000198799.12	ENST00000361127.6	protein_coding	protein_coding	protein_coding	protein_coding	5	63	2	1.80483	2.4768749999999997	3.14892	0.0201276	0.00499984	0.121243	0.0617433
chr2	47818127	47818220	1115220	0	-	0.387097	(0.378,0.408]	chr2	119619	6	EXON_MRNA	EXON_MRNA:INTRON	FBXO11	ENSG00000138081.22	ENST00000684712.1:ENST00000682451.1:ENST00000403359.8:ENST00000402508.5:ENST00000683894.1:ENST00000681999.1:ENST00000682975.1:ENST00000684085.1:ENST00000493962.6:ENST00000682484.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	63	2	1.80483	2.4768749999999997	3.14892	0.0201276	0.00499984	0.121243	0.0617433
chr8	95141830	95141930	3803073	0	+	0.38	(0.378,0.408]	chr8	352652	71	INTRON	INTRON	PLEKHF2	ENSG00000175895.4	ENST00000315367.4:ENST00000519516.1	protein_coding	protein_coding	protein_coding	protein_coding	5	63	2	1.80483	2.4768749999999997	3.14892	0.0201276	0.00499984	0.121243	0.0617433
chr15	69424881	69424981	6058847	0	+	0.32	(0.28,0.32]	chr15	576743	2	SS3_PROX	SS3_PROX:INTRON	KIF23	ENSG00000137807.16	ENST00000260363.9:ENST00000643966.1:ENST00000395392.6:ENST00000352331.8:ENST00000561089.5:ENST00000647715.1:ENST00000679126.1:ENST00000558346.5:ENST00000559279.6:ENST00000558585.5:ENST00000559283.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	106	2	1.60965	2.476865	3.34408	0.0460888	2.20552e-4	0.150099	0.0130309
chr11	62607099	62607196	4959965	0	-	0.556701	(0.515,0.57]	chr11	466434	1	EXON_MRNA	EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	EML3	ENSG00000149499.12	ENST00000394773.7:ENST00000278845.8:ENST00000394776.8:ENST00000529309.5:ENST00000494176.6:ENST00000531557.5:ENST00000494448.5:ENST00000483199.5:ENST00000438258.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	51	2	2.27238	2.4768499999999998	2.68132	0.0161808	0.00324198	0.101453	0.0524329
chr11	63713470	63713570	4800234	0	+	0.52	(0.515,0.57]	chr11	444943	1	SS3_PROX	SS3_PROX:INTRON	RTN3	ENSG00000133318.14	ENST00000341307.6:ENST00000356000.7:ENST00000542238.5:ENST00000538995.1:ENST00000339997.8:ENST00000540798.5:ENST00000537981.5:ENST00000377819.10:ENST00000536011.5:ENST00000543123.1:ENST00000543552.5:ENST00000545432.5:ENST00000338850.5:ENST00000354497.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	51	2	2.27238	2.4768499999999998	2.68132	0.0161808	0.00324198	0.101453	0.0524329
chr1	201145915	201145996	618929	0	-	0.407407	(0.378,0.408]	chr1	73342	2	INTRON	INTRON	TMEM9	ENSG00000116857.17	ENST00000367333.6:ENST00000367334.9:ENST00000367330.6:ENST00000367332.5:ENST00000495205.1:ENST00000485839.6:ENST00000497582.5:ENST00000455367.5:ENST00000414605.2:ENST00000435310.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	63	2	1.76	2.47684	3.19368	0.023484	0.00426861	0.128531	0.0573912
chr6	147243360	147243459	2989099	0	+	0.30303	(0.28,0.32]	chr6	280013	37	INTRON	INTRON	STXBP5	ENSG00000164506.15	ENST00000321680.11:ENST00000367481.7:ENST00000546097.5:ENST00000367480.7	protein_coding	protein_coding	protein_coding	protein_coding	7	118	2	1.78855	2.476825	3.1651	0.0159081	8.79973e-4	0.109464	0.0272129
chr15	63747083	63747183	6200019	0	-	0.33	(0.32,0.35]	chr15	591375	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	HERC1	ENSG00000103657.14	ENST00000443617.7:ENST00000561400.1:ENST00000560519.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	63	2	2.2643	2.476755	2.68921	0.0230336	0.00712852	0.118056	0.0756118
chr1	6646077	6646177	368500	0	-	0.52	(0.515,0.57]	chr1	43310	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	DNAJC11	ENSG00000007923.17	ENST00000451196.5:ENST00000377577.10:ENST00000690452.1:ENST00000685129.1:ENST00000472414.2:ENST00000688524.1:ENST00000686243.1:ENST00000691481.1:ENST00000689025.1:ENST00000690062.1:ENST00000689474.1:ENST00000685360.1:ENST00000294401.11:ENST00000426784.1:ENST00000473993.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	62	2	2.3252100000000002	2.47669	2.62817	0.00525266	0.004048	0.0633615	0.0578376
chr17	57414523	57414623	6634338	0	+	0.47	(0.44,0.476]	chr17	648045	71	INTRON	INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000674961.1:ENST00000582453.5:ENST00000675656.1:ENST00000322684.7:ENST00000579590.5:ENST00000442934.6:ENST00000579180.2:ENST00000579205.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	33	2	2.20949	2.476605	2.74372	0.0672585	0.0153007	0.183051	0.108569
chr22	18084232	18084326	7476022	0	+	0.457447	(0.44,0.476]	chr22	762220	1	INTRON	INTRON	PEX26	ENSG00000215193.14	ENST00000329627.11:ENST00000399744.8:ENST00000428061.2	protein_coding	protein_coding	protein_coding	protein_coding	2	33	2	2.20949	2.476605	2.74372	0.0672585	0.0153007	0.183051	0.108569
chr6	31510376	31510469	2842911	0	+	0.462366	(0.44,0.476]	chr6	267511	6	UTR3	UTR3:EXON_MRNA	MICB	ENSG00000204516.10	ENST00000538442.5:ENST00000399150.7:ENST00000252229.7	protein_coding	protein_coding	protein_coding	protein_coding	2	33	2	2.20949	2.476605	2.74372	0.0672585	0.0153007	0.183051	0.108569
chr7	152175990	152176090	3678637	0	-	0.48	(0.476,0.515]	chr7	341457	4	SS5_PROX	SS5_PROX:INTRON	KMT2C	ENSG00000055609.21	ENST00000360104.8:ENST00000262189.11:ENST00000680877.1:ENST00000679560.1:ENST00000683120.1:ENST00000679393.1:ENST00000683200.1:ENST00000684261.1:ENST00000682283.1:ENST00000473186.5:ENST00000679882.1:ENST00000683397.1:ENST00000684307.1:ENST00000683625.1:ENST00000684398.1:ENST00000683670.1:ENST00000680969.1:ENST00000681033.1:ENST00000682176.1:ENST00000683159.1:ENST00000558665.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	61	2	1.95469	2.476605	2.99852	0.0115753	0.0077575	0.0962115	0.0757402
chr7	117037578	117037678	3386833	0	+	0.37	(0.35,0.378]	chr7	317151	142	INTRON	INTRON	ST7:ST7-OT4	ENSG00000004866.22:ENSG00000214188.9	ENST00000393446.6:ENST00000265437.9:ENST00000393451.7:ENST00000438863.5:ENST00000393449.5:ENST00000443979.5:ENST00000323984.8:ENST00000417919.5:ENST00000446490.5:ENST00000471110.5:ENST00000422922.5:ENST00000432298.5:ENST00000449366.5:ENST00000487459.5:ENST00000393443.5:ENST00000467538.5:ENST00000434836.5:ENST00000465133.5:ENST00000477742.5:ENST00000462544.1:ENST00000393444.7:ENST00000393447.8	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:nonsense_mediated_decay:lncRNA:processed_transcript	3	48	2	2.2877	2.476585	2.66547	0.0233639	0.0155765	0.118323	0.109411
chr2	69939573	69939672	805758	0	+	0.292929	(0.28,0.32]	chr2	89939	14	UTR3	UTR3:EXON_MRNA:INTRON	MXD1	ENSG00000059728.11	ENST00000540449.5:ENST00000264444.7:ENST00000465446.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	196	2	1.88816	2.47652	3.06488	0.00310592	3.95846e-4	0.0512344	0.0185763
chr2	19900529	19900629	1074685	0	-	0.44	(0.408,0.44]	chr2	114710	1	SS5_PROX	SS5_PROX:INTRON	TTC32	ENSG00000183891.6	ENST00000333610.4:ENST00000402414.1:ENST00000431392.1	protein_coding	protein_coding	protein_coding	protein_coding	6	69	2	1.35739	2.476515	3.59564	0.063317	5.73354e-4	0.177047	0.0217398
chr16	16570692	16570792	6311569	0	+	0.29	(0.28,0.32]	chr16	604098	707	INTRON	INTRON	ENSG00000260126	ENSG00000260126.2	ENST00000567465.2	lncRNA	lncRNA	lncRNA	lncRNA	2	42	2	2.38101	2.47648	2.57195	0.0456017	0.0331711	0.164236	0.133994
chr7	101852152	101852252	3366710	0	+	0.3	(0.28,0.32]	chr7	315215	328	INTRON	INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000497815.5:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000607092.1:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000558469.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	42	2	2.38101	2.47648	2.57195	0.0456017	0.0331711	0.164236	0.133994
chr4	39974041	39974141	2132167	0	-	0.56	(0.515,0.57]	chr4	210244	7	INTRON	INTRON	PDS5A	ENSG00000121892.15	ENST00000303538.13:ENST00000503396.5	protein_coding	protein_coding	protein_coding	protein_coding	5	53	2	1.63907	2.476475	3.31388	0.0350277	0.00174704	0.137535	0.0386026
chr6	63641179	63641278	2883341	0	+	0.40404	(0.378,0.408]	chr6	273549	40	INTRON	INTRON	PHF3	ENSG00000118482.12	ENST00000262043.8:ENST00000506783.5:ENST00000481385.6:ENST00000515594.5:ENST00000494284.6:ENST00000509876.5:ENST00000509330.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	47	2	2.38873	2.4764049999999997	2.56408	0.0458857	0.00566993	0.149888	0.0678837
chr4	6826482	6826582	1922027	0	+	0.43	(0.408,0.44]	chr4	192999	14	INTRON	INTRON	KIAA0232	ENSG00000170871.12	ENST00000307659.6:ENST00000425103.5	protein_coding	protein_coding	protein_coding	protein_coding	5	72	2	2.45003	2.476365	2.5027	0.00990006	0.00238178	0.0838372	0.0449397
chr7	119666565	119666665	3628002	0	-	0.31	(0.28,0.32]	chr7	337315	1661	INTRON	INTRON	LINC02476	ENSG00000225546.6	ENST00000660268.1	lncRNA	lncRNA	lncRNA	lncRNA	5	91	2	2.38504	2.4763450000000002	2.56765	0.00835086	0.00475871	0.0774402	0.0636201
chr6	31541531	31541582	3078843	0	-	0.666667	(0.57,1]	chr6	286774	1	EXON_MRNA	EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DDX39B	ENSG00000198563.14	ENST00000458640.5:ENST00000462256.5:ENST00000396172.6:ENST00000482195.5:ENST00000431908.5:ENST00000481456.1:ENST00000428098.5:ENST00000456662.5:ENST00000428450.5:ENST00000449757.5:ENST00000456976.5:ENST00000418897.5:ENST00000419020.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	17	103	2	1.80873	2.476335	3.14394	0.00141587	1.17552e-5	0.0340865	0.0025307
chr1	25242886	25242967	402298	0	-	0.506173	(0.476,0.515]	chr1	48346	2	SS3_PROX	SS3_PROX:INTRON	RSRP1	ENSG00000117616.18	ENST00000243189.12:ENST00000498238.1:ENST00000569495.5:ENST00000568254.5:ENST00000565733.5:ENST00000566395.5:ENST00000473314.6:ENST00000570063.5:ENST00000564223.5:ENST00000475766.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	61	2	1.53534	2.47631	3.41728	0.0476737	0.00165726	0.170116	0.0369207
chr8	123080522	123080620	3850307	0	+	0.428571	(0.408,0.44]	chr8	354666	29	INTRON	INTRON	TBC1D31	ENSG00000156787.17	ENST00000520368.5:ENST00000519418.5:ENST00000287380.6:ENST00000522420.5:ENST00000327098.9:ENST00000518099.5:ENST00000521676.5:ENST00000524307.5:ENST00000522276.1:ENST00000518684.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	99	2	2.39349	2.476255	2.55902	0.00467273	7.64731e-4	0.0600108	0.0254338
chr7	139398398	139398498	3437981	0	+	0.32	(0.28,0.32]	chr7	320341	4	SS3_PROX	SS3_PROX:INTRON	LUC7L2:FMC1-LUC7L2	ENSG00000146963.18:ENSG00000269955.2	ENST00000541170.7:ENST00000541515.3:ENST00000608368.5:ENST00000619796.4:ENST00000354926.9:ENST00000456182.5:ENST00000263545.7:ENST00000463912.5:ENST00000498518.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	156	2	2.45547	2.476245	2.49702	0.00495986	4.57941e-4	0.0615009	0.0193643
chr1	155719521	155719620	229821	0	+	0.464646	(0.44,0.476]	chr1	27013	20	INTRON	INTRON	DAP3	ENSG00000132676.16	ENST00000471642.6:ENST00000471214.5:ENST00000343043.7:ENST00000368336.10:ENST00000535183.5:ENST00000421487.6:ENST00000496863.5:ENST00000465375.5:ENST00000462002.5:ENST00000470830.5:ENST00000497826.5:ENST00000463575.5:ENST00000471523.1:ENST00000608852.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	33	2	2.46135	2.476235	2.49112	0.0374637	0.0315968	0.144381	0.140008
chr11	953311	953410	4721365	0	+	0.474747	(0.44,0.476]	chr11	436642	60	INTRON	INTRON	AP2A2	ENSG00000183020.15	ENST00000529818.6:ENST00000332231.9:ENST00000448903.7:ENST00000534328.6:ENST00000525796.5:ENST00000529858.6:ENST00000693238.1:ENST00000687890.1:ENST00000687792.1:ENST00000528815.5:ENST00000528195.6:ENST00000531548.6:ENST00000534485.6:ENST00000527024.2:ENST00000526753.6:ENST00000530801.6:ENST00000524559.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	33	2	2.46135	2.476235	2.49112	0.0374637	0.0315968	0.144381	0.140008
chr17	82160227	82160326	6851904	0	-	0.444444	(0.44,0.476]	chr17	678988	19	INTRON	INTRON	CCDC57	ENSG00000176155.21	ENST00000694881.1:ENST00000389641.9:ENST00000694882.1:ENST00000665763.1:ENST00000578910.2:ENST00000419322.6:ENST00000327026.7:ENST00000392343.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	33	2	2.46135	2.476235	2.49112	0.0374637	0.0315968	0.144381	0.140008
chr21	34846999	34847099	7446851	0	-	0.47	(0.44,0.476]	chr21	759836	120	INTRON	INTRON	RUNX1	ENSG00000159216.19	ENST00000300305.7:ENST00000675419.1:ENST00000437180.5:ENST00000344691.8:ENST00000482318.5:ENST00000399240.5:ENST00000358356.9:ENST00000469087.1:ENST00000399237.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	33	2	2.46135	2.476235	2.49112	0.0374637	0.0315968	0.144381	0.140008
chr3	23825300	23825400	1387923	0	+	0.46	(0.44,0.476]	chr3	145385	134	INTRON	INTRON	UBE2E1	ENSG00000170142.12	ENST00000306627.8:ENST00000346855.7:ENST00000495141.5:ENST00000442670.5:ENST00000424381.5:ENST00000467766.5:ENST00000475680.5:ENST00000452012.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	33	2	2.46135	2.476235	2.49112	0.0374637	0.0315968	0.144381	0.140008
chr3	149047431	149047527	1840594	0	-	0.46875	(0.44,0.476]	chr3	185107	8	INTRON	INTRON	HLTF	ENSG00000071794.16	ENST00000310053.10:ENST00000465259.5:ENST00000392912.6:ENST00000494055.5:ENST00000467858.1	protein_coding	protein_coding	protein_coding	protein_coding	2	33	2	2.46135	2.476235	2.49112	0.0374637	0.0315968	0.144381	0.140008
chr5	57253925	57254024	2358868	0	+	0.444444	(0.44,0.476]	chr5	227620	24	INTRON	INTRON	GPBP1	ENSG00000062194.16	ENST00000424459.7:ENST00000514387.6:ENST00000506184.7:ENST00000511209.5:ENST00000264779.6:ENST00000515484.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	33	2	2.46135	2.476235	2.49112	0.0374637	0.0315968	0.144381	0.140008
chr5	150734277	150734376	2751649	0	-	0.454545	(0.44,0.476]	chr5	259254	2	EXON_LNCRNA	EXON_LNCRNA:INTRON	DCTN4	ENSG00000132912.13	ENST00000447998.7:ENST00000424236.5:ENST00000446090.6:ENST00000627368.2:ENST00000521728.5:ENST00000519313.5:ENST00000518015.5:ENST00000521448.5:ENST00000521533.1:ENST00000521093.1:ENST00000520195.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	33	2	2.46135	2.476235	2.49112	0.0374637	0.0315968	0.144381	0.140008
chr9	112494612	112494712	4185866	0	+	0.46	(0.44,0.476]	chr9	381813	71	INTRON	INTRON	KIAA1958	ENSG00000165185.15	ENST00000337530.11:ENST00000536272.5:ENST00000374244.3	protein_coding	protein_coding	protein_coding	protein_coding	2	33	2	2.46135	2.476235	2.49112	0.0374637	0.0315968	0.144381	0.140008
chr7	72919585	72919680	3330195	0	+	0.463158	(0.44,0.476]	chr7	309572	5	EXON_LNCRNA	EXON_LNCRNA:INTRON	POM121:ENSG00000289042	ENSG00000196313.13:ENSG00000289042.1	ENST00000627934.3:ENST00000395270.5:ENST00000689827.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	6	87	2	2.07016	2.47621	2.88226	0.0151815	3.71378e-4	0.0994339	0.0173619
chr2	86123962	86124062	822562	0	+	0.37	(0.35,0.378]	chr2	91787	2	SS5_PROX	SS5_PROX:INTRON	PTCD3	ENSG00000132300.19	ENST00000254630.12:ENST00000484203.5:ENST00000480102.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	58	2	2.11531	2.4762	2.83709	0.01435	0.0119629	0.0966737	0.0962115
chr8	105352588	105352688	3837581	0	+	0.35	(0.32,0.35]	chr8	354033	325	INTRON	INTRON	ZFPM2	ENSG00000169946.14	ENST00000518180.1:ENST00000407775.7:ENST00000520492.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	116	2	2.30754	2.476175	2.64481	0.0076357	5.97546e-4	0.075226	0.0222617
chr9	135935965	135936063	4372302	0	-	0.418367	(0.408,0.44]	chr9	402502	21	INTRON	INTRON	UBAC1	ENSG00000130560.9	ENST00000371756.4:ENST00000489050.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	61	2	1.79818	2.47616	3.15414	0.020428	0.00469847	0.122109	0.0600108
chr12	110287753	110287852	5226163	0	+	0.525253	(0.515,0.57]	chr12	495234	46	INTRON	INTRON	ATP2A2	ENSG00000174437.18	ENST00000552636.2:ENST00000308664.10:ENST00000539276.7:ENST00000377685.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	46	2	2.11724	2.4761249999999997	2.83501	0.0117686	0.0110335	0.0927187	0.0894475
chr17	59630132	59630232	6641665	0	+	0.51	(0.476,0.515]	chr17	648527	96	INTRON	INTRON	CLTC	ENSG00000141367.12	ENST00000621829.4:ENST00000393043.5:ENST00000269122.8:ENST00000580081.1:ENST00000579456.5:ENST00000584313.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	68	2	1.28655	2.4760999999999997	3.66565	0.075974	4.18031e-4	0.194842	0.0182827
chr22	16638578	16638658	7473733	0	+	0.4125	(0.408,0.44]	chr22	762009	1	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO	TPTEP1	ENSG00000100181.22	ENST00000558085.6:ENST00000400593.6:ENST00000426585.5:ENST00000383140.7:ENST00000585784.1:ENST00000636884.1:ENST00000588424.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	15	207	2	2.35036	2.476095	2.60183	4.93872e-4	9.77917e-5	0.0206589	0.00831688
chr6	159740128	159740225	3022518	0	+	0.402062	(0.378,0.408]	chr6	281903	7	INTRON	INTRON	WTAP	ENSG00000146457.16	ENST00000358372.8:ENST00000650096.1:ENST00000614346.4:ENST00000621533.5:ENST00000631126.2:ENST00000337387.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	130	2	2.3978	2.476095	2.55439	0.00235448	4.01276e-4	0.0436213	0.0179994
chr1	150221061	150221161	550659	0	-	0.43	(0.408,0.44]	chr1	64668	3	SS3_PROX	SS3_PROX:INTRON	ANP32E	ENSG00000143401.15	ENST00000583931.6:ENST00000629042.2:ENST00000616917.4:ENST00000436748.6:ENST00000534437.1:ENST00000369114.9:ENST00000369115.3:ENST00000533654.5	protein_coding	protein_coding	protein_coding	protein_coding	3	45	2	1.74775	2.47606	3.20437	0.0735403	0.00306596	0.190238	0.0509893
chr2	65342906	65343005	1143293	0	-	0.434343	(0.408,0.44]	chr2	122222	78	INTRON	INTRON	SPRED2	ENSG00000198369.10	ENST00000356388.9:ENST00000443619.6:ENST00000452315.5:ENST00000474228.1:ENST00000426832.1:ENST00000440972.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	45	2	1.74775	2.47606	3.20437	0.0735403	0.00306596	0.190238	0.0509893
chr7	157346853	157346952	3455399	0	+	0.545455	(0.515,0.57]	chr7	323052	64	INTRON	INTRON	DNAJB6	ENSG00000105993.15	ENST00000441561.5:ENST00000429029.6:ENST00000262177.9:ENST00000486083.6:ENST00000417758.5:ENST00000459889.5:ENST00000443280.5:ENST00000488001.5:ENST00000441291.5:ENST00000437030.5:ENST00000412557.5:ENST00000453383.5:ENST00000439402.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	38	2	2.1885	2.47602	2.76354	0.0202537	0.0147344	0.121364	0.0983813
chr9	98834349	98834449	4173921	0	+	0.54	(0.515,0.57]	chr9	380373	20	INTRON	INTRON	GALNT12	ENSG00000119514.7	ENST00000375011.4:ENST00000610463.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	38	2	2.1885	2.47602	2.76354	0.0202537	0.0147344	0.121364	0.0983813
chr17	82190692	82190791	6852223	0	-	0.363636	(0.35,0.378]	chr17	679044	19	INTRON	INTRON	CCDC57	ENSG00000176155.21	ENST00000694881.1:ENST00000389641.9:ENST00000694882.1:ENST00000665763.1:ENST00000578910.2:ENST00000392343.3:ENST00000578187.1:ENST00000581625.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	65	2	2.4077	2.475955	2.54421	0.0122026	0.00630238	0.0910127	0.0722266
chr17	35003272	35003372	6599299	0	+	0.46	(0.44,0.476]	chr17	642195	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	LIG3	ENSG00000005156.12	ENST00000378526.9:ENST00000593099.5:ENST00000592244.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	53	2	1.87325	2.4759349999999998	3.07862	0.0265709	0.0060153	0.134088	0.0674604
chrX	53640646	53640745	7821442	0	-	0.353535	(0.35,0.378]	chrX	798209	60	INTRON	INTRON	HUWE1	ENSG00000086758.16	ENST00000262854.11:ENST00000342160.7:ENST00000612484.4:ENST00000218328.12	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	58	2	1.82281	2.47593	3.12905	0.0316938	0.00566312	0.144635	0.0653997
chr14	102637709	102637809	5822984	0	+	0.38	(0.378,0.408]	chr14	552490	440	INTRON	INTRON	RCOR1	ENSG00000089902.10	ENST00000262241.7	protein_coding	protein_coding	protein_coding	protein_coding	4	62	2	2.16303	2.4758500000000003	2.78867	0.0252473	0.00226991	0.12011	0.0437013
chr6	147685422	147685522	2990850	0	+	0.51	(0.476,0.515]	chr6	280163	89	INTRON	INTRON	ENSG00000227681	ENSG00000227681.5	ENST00000427015.1:ENST00000432506.5:ENST00000442094.5	lncRNA	lncRNA	lncRNA	lncRNA	3	44	2	2.32001	2.4758449999999996	2.63168	0.0237106	0.0136217	0.118716	0.101682
chr15	50620694	50620793	6172611	0	-	0.525253	(0.515,0.57]	chr15	588330	5	INTRON	INTRON	TRPM7	ENSG00000092439.16	ENST00000646667.1:ENST00000560955.5:ENST00000560638.1	protein_coding	protein_coding	protein_coding	protein_coding	8	85	2	1.67927	2.47584	3.27241	0.0157733	1.80226e-4	0.101453	0.0116696
chr10	5457092	5457190	4384319	0	+	0.27551	[0,0.28]	chr10	404451	2	UTR3	UTR3:EXON_MRNA	NET1	ENSG00000173848.19	ENST00000355029.9:ENST00000380359.3	protein_coding	protein_coding	protein_coding	protein_coding	5	105	2	2.13236	2.47583	2.8193	0.017376	0.00285248	0.104294	0.0494641
chr12	110736480	110736580	5411470	0	-	0.53	(0.515,0.57]	chr12	516744	11	INTRON	INTRON	PPP1CC	ENSG00000186298.12	ENST00000335007.10:ENST00000340766.9:ENST00000550991.5:ENST00000551676.5:ENST00000620030.1:ENST00000551690.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:processed_transcript	4	46	2	1.7492	2.4758	3.2024	0.0382504	0.00322022	0.15832	0.0507087
chr2	152753705	152753805	894609	0	+	0.52	(0.515,0.57]	chr2	99130	165	INTRON	INTRON	ARL6IP6	ENSG00000177917.12	ENST00000690727.1:ENST00000685752.1:ENST00000688293.1:ENST00000686839.1:ENST00000689155.1:ENST00000691702.1:ENST00000691523.1:ENST00000688012.1:ENST00000687504.1:ENST00000455875.6:ENST00000692399.1:ENST00000425034.6:ENST00000686080.1:ENST00000326446.10:ENST00000463690.2:ENST00000688130.1:ENST00000495469.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	46	2	1.7492	2.4758	3.2024	0.0382504	0.00322022	0.15832	0.0507087
chr21	42897645	42897744	7411380	0	+	0.525253	(0.515,0.57]	chr21	755302	2	INTRON	INTRON	NDUFV3	ENSG00000160194.18	ENST00000460259.1:ENST00000340344.4:ENST00000354250.7:ENST00000460740.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	46	2	1.7492	2.4758	3.2024	0.0382504	0.00322022	0.15832	0.0507087
chr11	5477804	5477904	4898000	0	-	0.57	(0.515,0.57]	chr11	459195	85	INTRON	INTRON	HBG2:ENSG00000239920:HBE1:OR51B5	ENSG00000196565.15:ENSG00000239920.2:ENSG00000213931.7:ENSG00000167355.8	ENST00000380252.6:ENST00000380259.7:ENST00000292896.3:ENST00000380237.5:ENST00000420726.6:ENST00000420465.6:ENST00000415970.6:ENST00000418729.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:nonsense_mediated_decay:processed_transcript	5	61	2	2.36534	2.47579	2.58624	0.00526399	0.00404547	0.0633874	0.0578376
chr10	68424282	68424381	4639278	0	-	0.454545	(0.44,0.476]	chr10	426660	10	INTRON	INTRON	DNA2	ENSG00000138346.15	ENST00000358410.8:ENST00000551118.6:ENST00000399179.6:ENST00000399180.3:ENST00000440722.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	102	2	2.42643	2.475755	2.52508	0.0033369	0.00121905	0.0528877	0.0319984
chr2	98473976	98474076	833170	0	+	0.54	(0.515,0.57]	chr2	93413	285	INTRON	INTRON	INPP4A	ENSG00000040933.16	ENST00000409016.8:ENST00000409851.8:ENST00000074304.9:ENST00000409463.5:ENST00000409540.7	protein_coding	protein_coding	protein_coding	protein_coding	3	39	2	2.43589	2.47575	2.51561	0.0370871	0.00635044	0.139194	0.0723103
chr5	75715226	75715325	2644364	0	-	0.545455	(0.515,0.57]	chr5	251418	19	INTRON	INTRON	POC5	ENSG00000152359.15	ENST00000428202.7:ENST00000514838.6:ENST00000503835.5:ENST00000515285.5:ENST00000502826.5:ENST00000506164.5:ENST00000512125.5:ENST00000508467.5:ENST00000507421.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	39	2	2.43589	2.47575	2.51561	0.0370871	0.00635044	0.139194	0.0723103
chr11	68467914	68468014	4817404	0	+	0.46	(0.44,0.476]	chr11	448907	67	INTRON	INTRON	PPP6R3	ENSG00000110075.15	ENST00000530427.5:ENST00000528635.5:ENST00000529907.5:ENST00000533127.5:ENST00000534534.5:ENST00000529344.5:ENST00000524845.5:ENST00000393800.7:ENST00000265637.8:ENST00000524904.5:ENST00000393801.7:ENST00000265636.9:ENST00000529710.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	44	2	2.21079	2.47571	2.74063	0.0194581	0.0176095	0.119831	0.105143
chrX	85089260	85089359	7689116	0	+	0.474747	(0.44,0.476]	chrX	787124	17	UTR3	UTR3:EXON_MRNA	APOOL	ENSG00000155008.16	ENST00000373173.7	protein_coding	protein_coding	protein_coding	protein_coding	3	44	2	2.21079	2.47571	2.74063	0.0194581	0.0176095	0.119831	0.105143
chr2	235589822	235589922	1042295	0	+	0.43	(0.408,0.44]	chr2	111222	649	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1:ENST00000402604.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	45	2	2.05947	2.4757	2.89193	0.0333232	0.00950364	0.134145	0.0863579
chr9	128075974	128076074	4202509	0	+	0.38	(0.378,0.408]	chr9	383913	70	INTRON	INTRON	SLC25A25	ENSG00000148339.13	ENST00000373068.6:ENST00000373069.10	protein_coding	protein_coding	protein_coding	protein_coding	4	55	2	1.94559	2.475635	3.00568	0.0211434	0.00811866	0.122929	0.0766625
chr11	33134869	33134969	4940707	0	-	0.38	(0.378,0.408]	chr11	462857	4	SS3_PROX	SS3_PROX:INTRON	CSTF3	ENSG00000176102.13	ENST00000323959.9:ENST00000524827.6:ENST00000526480.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	47	2	1.89621	2.475615	3.05502	0.0488044	0.00689519	0.173377	0.0717484
chr1	23166465	23166565	398994	0	-	0.51	(0.476,0.515]	chr1	47812	329	INTRON	INTRON	LUZP1	ENSG00000169641.14	ENST00000302291.8:ENST00000314174.5:ENST00000471849.5	protein_coding	protein_coding	protein_coding	protein_coding	3	44	2	2.06491	2.475605	2.8863	0.0304733	0.0111679	0.143385	0.0877435
chr12	118342729	118342829	5429989	0	-	0.5	(0.476,0.515]	chr12	518768	452	INTRON	INTRON	TAOK3	ENSG00000135090.14	ENST00000392533.8:ENST00000419821.6:ENST00000541186.5:ENST00000541878.5:ENST00000542902.5:ENST00000542532.5:ENST00000541786.5:ENST00000539872.5:ENST00000542692.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	44	2	2.06491	2.475605	2.8863	0.0304733	0.0111679	0.143385	0.0877435
chr4	450719	450819	2092686	0	-	0.49	(0.476,0.515]	chr4	206783	59	INTRON	INTRON	ABCA11P:ZNF721	ENSG00000251595.7:ENSG00000182903.16	ENST00000451020.6:ENST00000514396.5:ENST00000507854.1:ENST00000515578.5:ENST00000506646.5:ENST00000507078.1:ENST00000511833.3:ENST00000338977.5:ENST00000505900.1	protein_coding	protein_coding	protein_coding:transcribed_processed_pseudogene	protein_coding:nonsense_mediated_decay:processed_transcript	3	44	2	2.06491	2.475605	2.8863	0.0304733	0.0111679	0.143385	0.0877435
chr9	99223376	99223474	4175956	0	+	0.479592	(0.476,0.515]	chr9	380720	3	INTRON	INTRON	SEC61B	ENSG00000106803.10	ENST00000498603.5:ENST00000223641.5	protein_coding	protein_coding	protein_coding	protein_coding	3	44	2	2.06491	2.475605	2.8863	0.0304733	0.0111679	0.143385	0.0877435
chrX	13362571	13362671	7622582	0	+	0.28	[0,0.28]	chrX	780353	209	INTRON	INTRON	LINC01203	ENSG00000226985.7	ENST00000669963.1:ENST00000661545.1:ENST00000659526.1:ENST00000656410.1:ENST00000661104.1:ENST00000456091.2:ENST00000655502.1:ENST00000671651.1:ENST00000656979.1:ENST00000656271.1:ENST00000661629.1:ENST00000661464.1:ENST00000668192.1:ENST00000665887.1:ENST00000659191.1:ENST00000667868.1:ENST00000653729.1:ENST00000656111.1	lncRNA	lncRNA	lncRNA	lncRNA	3	64	2	1.89998	2.47556	3.05114	0.0599553	0.0075493	0.169548	0.0773151
chrX	154795169	154795269	7915508	0	-	0.41	(0.408,0.44]	chrX	806172	25	INTRON	INTRON	MPP1	ENSG00000130830.15	ENST00000369534.8:ENST00000413259.7:ENST00000439370.5:ENST00000393531.5:ENST00000453245.5:ENST00000494170.1:ENST00000462825.5:ENST00000393529.5:ENST00000475943.5:ENST00000428488.1:ENST00000417435.5:ENST00000369531.1:ENST00000471821.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	72	2	2.00629	2.47555	2.94481	0.0189661	0.00110214	0.108861	0.03038
chr1	223758978	223759075	320732	0	+	0.298969	(0.28,0.32]	chr1	36914	15	EXON_LNCRNA	EXON_LNCRNA:SS3_PROX:INTRON	CAPN2	ENSG00000162909.18	ENST00000433674.6:ENST00000295006.6:ENST00000474026.5:ENST00000487223.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	112	2	2.38504	2.47553	2.56602	0.00475871	0.00326427	0.0636201	0.0508595
chr12	24888490	24888590	5297301	0	-	0.43	(0.408,0.44]	chr12	503865	67	INTRON	INTRON	BCAT1	ENSG00000060982.15	ENST00000261192.12:ENST00000538118.5:ENST00000342945.9:ENST00000539282.5:ENST00000539780.5:ENST00000544418.1:ENST00000546285.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	82	2	2.19398	2.475525	2.75707	0.0043348	0.00317496	0.0600652	0.0503542
chr6	43543079	43543179	3096985	0	-	0.34	(0.32,0.35]	chr6	290015	87	INTRON	INTRON	XPO5	ENSG00000124571.18	ENST00000265351.12:ENST00000398835.7:ENST00000612911.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	96	2	1.80306	2.475475	3.14789	0.0246393	5.00642e-4	0.12011	0.020217099999999998
chr1	28026591	28026691	408380	0	-	0.4	(0.378,0.408]	chr1	49182	90	INTRON	INTRON	EYA3	ENSG00000158161.16	ENST00000373871.8:ENST00000540618.5:ENST00000436342.6:ENST00000373864.5:ENST00000373863.3:ENST00000471498.5:ENST00000468665.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	63	2	1.71374	2.47541	3.23708	0.0274158	0.00365053	0.136498	0.0535094
chr7	138464001	138464101	3434678	0	+	0.58	(0.57,1]	chr7	319959	23	INTRON	INTRON	TRIM24	ENSG00000122779.18	ENST00000343526.9:ENST00000415680.6:ENST00000497516.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	51	2	2.39678	2.475285	2.55379	0.0015786	0.00143653	0.0362091	0.0347139
chr16	18129465	18129565	6453928	0	-	0.29	(0.28,0.32]	chr16	621960	1257	INTRON	INTRON	ENSG00000259929:ENSG00000260242	ENSG00000259929.5:ENSG00000260242.1	ENST00000567304.1:ENST00000563866.1	lncRNA	lncRNA	lncRNA	lncRNA	5	96	2	2.4721	2.475185	2.47827	0.00906617	0.00455673	0.0854289	0.0595107
chr21	39309150	39309249	7465498	0	-	0.434343	(0.408,0.44]	chr21	760568	102	INTRON	INTRON	BRWD1	ENSG00000185658.14	ENST00000333229.6:ENST00000342449.8:ENST00000380800.7:ENST00000341322.4:ENST00000470108.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	60	2	2.16746	2.475175	2.78289	0.024436	0.0022785	0.12011	0.0437013
chr5	154775578	154775678	2527200	0	+	0.41	(0.408,0.44]	chr5	241610	177	INTRON	INTRON	LARP1	ENSG00000155506.19	ENST00000687700.1:ENST00000336314.9:ENST00000690816.1:ENST00000518297.6:ENST00000517616.5:ENST00000518892.1:ENST00000521577.1:ENST00000519931.5:ENST00000524248.5:ENST00000685946.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	60	2	2.16746	2.475175	2.78289	0.024436	0.0022785	0.12011	0.0437013
chr7	77706039	77706139	3343165	0	+	0.44	(0.408,0.44]	chr7	311432	83	INTRON	INTRON	RSBN1L	ENSG00000187257.16	ENST00000334955.13:ENST00000445288.5	protein_coding	protein_coding	protein_coding	protein_coding	6	82	2	2.22819	2.475135	2.72208	0.00373083	0.00364449	0.0561984	0.0535094
chr6	3262485	3262585	2789279	0	+	0.47	(0.44,0.476]	chr6	263445	29	INTRON	INTRON	PSMG4	ENSG00000180822.12	ENST00000509933.1:ENST00000380306.8:ENST00000380305.4:ENST00000438998.7:ENST00000419065.6:ENST00000473000.2:ENST00000324987.4:ENST00000451246.2:ENST00000454610.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	110	2	2.15426	2.47512	2.79598	0.00372059	5.82325e-4	0.0535094	0.0219289
chr17	32158380	32158480	6596978	0	+	0.33	(0.32,0.35]	chr17	641728	153	INTRON	INTRON	RHOT1	ENSG00000126858.19	ENST00000333942.10:ENST00000358365.7:ENST00000583994.5:ENST00000545287.7:ENST00000354266.7:ENST00000581031.5:ENST00000581094.5:ENST00000578205.5:ENST00000580976.1:ENST00000394692.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	52	2	2.04237	2.4751149999999997	2.90786	0.0375542	0.00993008	0.140222	0.0877296
chr2	55268220	55268306	1123007	0	-	0.337209	(0.32,0.35]	chr2	120392	2	SS5_PROX	SS5_PROX:INTRON	MTIF2	ENSG00000085760.15	ENST00000403721.5:ENST00000263629.9:ENST00000446660.5:ENST00000366137.6:ENST00000441307.5:ENST00000420637.5:ENST00000417363.5:ENST00000412530.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	52	2	2.04237	2.4751149999999997	2.90786	0.0375542	0.00993008	0.140222	0.0877296
chr21	32377499	32377588	7438659	0	-	0.426966	(0.408,0.44]	chr21	758925	3	INTRON	INTRON	URB1	ENSG00000142207.7	ENST00000382751.4	protein_coding	protein_coding	protein_coding	protein_coding	6	82	2	2.15894	2.47509	2.79124	0.00504142	0.00276922	0.0646039	0.0469265
chr20	5604940	5605038	7312284	0	-	0.244898	[0,0.28]	chr20	744619	1	INTRON	INTRON	GPCPD1	ENSG00000125772.14	ENST00000379019.7:ENST00000481690.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	13	266	2	2.23337	2.475065	2.71676	0.00499004	9.29404e-5	0.0617433	0.00807206
chr16	82155712	82155812	6531388	0	-	0.52	(0.515,0.57]	chr16	632770	38	INTRON	INTRON	MPHOSPH6	ENSG00000135698.10	ENST00000563100.5:ENST00000258169.9:ENST00000563504.5:ENST00000568016.1:ENST00000569599.5:ENST00000566748.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	39	2	1.86007	2.4750449999999997	3.09002	0.0526611	0.00491099	0.178401	0.0609494
chr16	85431018	85431118	6414140	0	+	0.52	(0.515,0.57]	chr16	615465	717	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	3	39	2	1.86007	2.4750449999999997	3.09002	0.0526611	0.00491099	0.178401	0.0609494
chr17	16444763	16444863	6562707	0	+	0.55	(0.515,0.57]	chr17	637925	28	INTRON	INTRON	SNHG29	ENSG00000175061.19	ENST00000584177.5:ENST00000665646.1:ENST00000660419.1:ENST00000668333.1:ENST00000664939.1:ENST00000583400.7:ENST00000669136.1:ENST00000580770.5:ENST00000581718.6:ENST00000579473.6:ENST00000581361.5:ENST00000692724.1:ENST00000689691.1:ENST00000686699.1:ENST00000472367.5:ENST00000483588.2:ENST00000478103.6:ENST00000658943.1	lncRNA	lncRNA	lncRNA	lncRNA	3	39	2	1.86007	2.4750449999999997	3.09002	0.0526611	0.00491099	0.178401	0.0609494
chr3	43698875	43698975	1410253	0	+	0.4	(0.378,0.408]	chr3	147916	2	SS3_PROX	SS3_PROX:INTRON	ABHD5	ENSG00000011198.10	ENST00000643520.1:ENST00000456453.5:ENST00000458276.7:ENST00000486764.1:ENST00000649763.1:ENST00000643140.1:ENST00000643500.1:ENST00000644371.2:ENST00000013894.3:ENST00000646378.1:ENST00000643477.1:ENST00000646799.1:ENST00000454293.2:ENST00000642351.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	80	2	1.94426	2.47497	3.00568	0.00811866	0.00520377	0.0766625	0.0655609
chr16	75382053	75382152	6528778	0	-	0.454545	(0.44,0.476]	chr16	632317	9	INTRON	INTRON	CFDP1	ENSG00000153774.9	ENST00000283882.4:ENST00000612761.1:ENST00000569341.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	108	2	1.6671	2.474955	3.28281	0.0144334	2.0352e-4	0.0972071	0.0124395
chr16	89530130	89530222	6420570	0	+	0.543478	(0.515,0.57]	chr16	616241	7	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	SPG7	ENSG00000197912.16	ENST00000647079.1:ENST00000646303.1:ENST00000643649.1:ENST00000643307.1:ENST00000566371.6:ENST00000644498.1:ENST00000645897.1:ENST00000643668.1:ENST00000644225.1:ENST00000645818.2:ENST00000645977.1:ENST00000645063.1:ENST00000646263.1:ENST00000643724.1:ENST00000644781.1:ENST00000644901.1:ENST00000645042.1:ENST00000646531.1:ENST00000646930.1:ENST00000642436.1:ENST00000644210.1:ENST00000564047.2:ENST00000646589.1:ENST00000268704.7:ENST00000646826.1:ENST00000646716.1:ENST00000643345.1:ENST00000341316.6:ENST00000645533.1:ENST00000646958.1:ENST00000642371.1:ENST00000643105.1:ENST00000645354.1:ENST00000642334.1:ENST00000647227.1:ENST00000646445.1:ENST00000564409.2:ENST00000643954.1:ENST00000646399.1:ENST00000644671.1:ENST00000643178.1:ENST00000644748.1:ENST00000643496.1:ENST00000647032.1:ENST00000644751.1:ENST00000642427.1:ENST00000643370.1:ENST00000645886.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	121	2	2.28079	2.474955	2.66912	0.00145207	2.17319e-4	0.0349828	0.0135077
chr1	37547924	37548023	424203	0	-	0.434343	(0.408,0.44]	chr1	51278	65	INTRON	INTRON	SNIP1	ENSG00000163877.11	ENST00000296215.8:ENST00000468040.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	34	2	2.2957	2.4749499999999998	2.6542	0.0516458	0.0227514	0.176696	0.117618
chr15	41023025	41023125	6152277	0	-	0.44	(0.408,0.44]	chr15	585285	4	SS5_PROX	SS5_PROX:INTRON	INO80	ENSG00000128908.18	ENST00000648947.1:ENST00000401393.7:ENST00000558357.6:ENST00000559995.2:ENST00000557849.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	34	2	2.2957	2.4749499999999998	2.6542	0.0516458	0.0227514	0.176696	0.117618
chr16	74605457	74605556	6525316	0	-	0.414141	(0.408,0.44]	chr16	631842	423	INTRON	INTRON	GLG1	ENSG00000090863.12	ENST00000205061.9:ENST00000422840.7:ENST00000447066.6:ENST00000562090.5:ENST00000567951.5:ENST00000627032.2:ENST00000565260.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	34	2	2.2957	2.4749499999999998	2.6542	0.0516458	0.0227514	0.176696	0.117618
chr18	3454256	3454356	6867143	0	+	0.41	(0.408,0.44]	chr18	680332	4	SS5_PROX	SS5_PROX:INTRON	TGIF1	ENSG00000177426.22	ENST00000552383.5:ENST00000401449.5:ENST00000550958.5:ENST00000548489.6:ENST00000618001.4:ENST00000549780.5:ENST00000549253.5:ENST00000405385.7:ENST00000407501.6:ENST00000546979.5:ENST00000343820.10:ENST00000551402.1:ENST00000577543.5:ENST00000551541.5:ENST00000345133.9:ENST00000330513.10:ENST00000549546.5:ENST00000400167.6:ENST00000549468.5	protein_coding	protein_coding	protein_coding	protein_coding	2	34	2	2.2957	2.4749499999999998	2.6542	0.0516458	0.0227514	0.176696	0.117618
chr2	31905174	31905274	1090056	0	-	0.44	(0.408,0.44]	chr2	116879	115	INTRON	INTRON	MEMO1:DPY30	ENSG00000162959.14:ENSG00000162961.14	ENST00000295065.9:ENST00000446765.5:ENST00000404530.6:ENST00000379383.7:ENST00000490459.5:ENST00000426310.6:ENST00000422936.5:ENST00000413686.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	34	2	2.2957	2.4749499999999998	2.6542	0.0516458	0.0227514	0.176696	0.117618
chr2	173905660	173905760	1268469	0	-	0.43	(0.408,0.44]	chr2	134189	50	UTR3	UTR3:EXON_MRNA:INTRON	SP3	ENSG00000172845.18	ENST00000650743.1:ENST00000651846.1:ENST00000310015.12	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	34	2	2.2957	2.4749499999999998	2.6542	0.0516458	0.0227514	0.176696	0.117618
chr6	119198367	119198467	3204297	0	-	0.44	(0.408,0.44]	chr6	298290	41	INTRON	INTRON	MAN1A1	ENSG00000111885.7	ENST00000368468.4	protein_coding	protein_coding	protein_coding	protein_coding	2	34	2	2.2957	2.4749499999999998	2.6542	0.0516458	0.0227514	0.176696	0.117618
chr9	92411258	92411358	4155299	0	+	0.44	(0.408,0.44]	chr9	379002	310	INTRON	INTRON	CENPP	ENSG00000188312.14	ENST00000375587.8	protein_coding	protein_coding	protein_coding	protein_coding	2	34	2	2.2957	2.4749499999999998	2.6542	0.0516458	0.0227514	0.176696	0.117618
chrX	3903521	3903602	7747630	0	-	0.419753	(0.408,0.44]	chrX	793153	2	EXON_LNCRNA	EXON_LNCRNA:INTRON	ENSG00000285756	ENSG00000285756.2	ENST00000650538.1:ENST00000424415.2:ENST00000451781.1	lncRNA	lncRNA	lncRNA	lncRNA	2	34	2	2.2957	2.4749499999999998	2.6542	0.0516458	0.0227514	0.176696	0.117618
chr1	150339410	150339507	221533	0	+	0.42268	(0.408,0.44]	chr1	25002	7	INTRON	INTRON	PRPF3	ENSG00000117360.13	ENST00000324862.7:ENST00000467329.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	60	2	2.45003	2.47493	2.49983	0.00990006	0.00713527	0.0838372	0.0756118
chr7	77910609	77910709	3345083	0	+	0.44	(0.408,0.44]	chr7	311537	2	SS5_PROX	SS5_PROX:INTRON	PHTF2	ENSG00000006576.17	ENST00000422959.7:ENST00000416283.6:ENST00000307305.12:ENST00000424760.5:ENST00000415251.6:ENST00000275575.11:ENST00000450574.5:ENST00000248550.7:ENST00000454592.5:ENST00000479515.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	60	2	2.45003	2.47493	2.49983	0.00990006	0.00713527	0.0838372	0.0756118
chr8	95141630	95141730	3803071	0	+	0.42	(0.408,0.44]	chr8	352652	69	INTRON	INTRON	PLEKHF2	ENSG00000175895.4	ENST00000315367.4:ENST00000519516.1	protein_coding	protein_coding	protein_coding	protein_coding	4	60	2	2.45003	2.47493	2.49983	0.00990006	0.00713527	0.0838372	0.0756118
chr1	229550526	229550625	653691	0	-	0.393939	(0.378,0.408]	chr1	77488	7	INTRON	INTRON	ABCB10	ENSG00000135776.5	ENST00000344517.5	protein_coding	protein_coding	protein_coding	protein_coding	6	70	2	1.58985	2.474915	3.35998	0.0290335	0.00230615	0.141186	0.0428247
chr7	12341558	12341658	3484782	0	-	0.49	(0.476,0.515]	chr7	325829	1	SS5_PROX	SS5_PROX:INTRON	VWDE	ENSG00000146530.15	ENST00000275358.8:ENST00000452576.6:ENST00000521169.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	137	2	2.2774	2.474915	2.67243	0.00134297	4.26065e-4	0.0336321	0.0184573
chr16	29514985	29515085	6470715	0	-	0.43	(0.408,0.44]	chr16	625147	91	INTRON	INTRON	ENSG00000288632	ENSG00000288632.1	ENST00000675579.1	lncRNA	lncRNA	lncRNA	lncRNA	14	195	2	2.3876	2.474775	2.56195	4.04529e-4	2.05556e-4	0.0185763	0.0124557
chr11	68082520	68082620	4972206	0	-	0.43	(0.408,0.44]	chr11	469426	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	CHKA	ENSG00000110721.12	ENST00000265689.9:ENST00000356135.9:ENST00000528235.5:ENST00000531341.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	61	2	1.70409	2.474595	3.2451	0.028108	0.00337792	0.137011	0.0516884
chr4	78785208	78785307	1981473	0	+	0.474747	(0.44,0.476]	chr4	198463	81	INTRON	INTRON	BMP2K	ENSG00000138756.19	ENST00000389010.7:ENST00000502613.3:ENST00000502871.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	86	2	2.44812	2.4745850000000003	2.50105	0.00368597	0.00240161	0.0535094	0.0452061
chrX	154787881	154787980	7915427	0	-	0.313131	(0.28,0.32]	chrX	806147	11	INTRON	INTRON	MPP1	ENSG00000130830.15	ENST00000369534.8:ENST00000413259.7:ENST00000439370.5:ENST00000393531.5:ENST00000453245.5:ENST00000494170.1:ENST00000462825.5:ENST00000393529.5:ENST00000475943.5:ENST00000428488.1:ENST00000488754.5:ENST00000417435.5:ENST00000488694.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	24	399	2	2.39341	2.474425	2.55544	3.45876e-4	8.02042e-5	0.0173282	0.00746638
chr6	4921511	4921610	2792316	0	+	0.50505	(0.476,0.515]	chr6	263614	288	INTRON	INTRON	CDYL	ENSG00000153046.18	ENST00000328908.9:ENST00000440139.5:ENST00000397588.8:ENST00000472453.5:ENST00000449732.6:ENST00000343762.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	45	2	2.21677	2.4744099999999998	2.73205	0.0207026	0.0159328	0.110999	0.109464
chr1	203820574	203820673	296933	0	+	0.474747	(0.44,0.476]	chr1	34151	15	INTRON	INTRON	ZC3H11A:ZBED6	ENSG00000058673.17:ENSG00000257315.3	ENST00000367210.3:ENST00000453771.5:ENST00000638800.1:ENST00000367214.5:ENST00000639812.1:ENST00000367212.7:ENST00000332127.8:ENST00000550078.2:ENST00000495527.5:ENST00000640465.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	44	2	2.27304	2.47438	2.67572	0.0212064	0.0158915	0.113017	0.109464
chr20	35787704	35787804	7263040	0	+	0.46	(0.44,0.476]	chr20	738060	47	INTRON	INTRON	PHF20	ENSG00000025293.17	ENST00000461122.5:ENST00000461405.1:ENST00000374012.8:ENST00000452270.5:ENST00000374000.8:ENST00000339089.10:ENST00000481202.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	44	2	2.27304	2.47438	2.67572	0.0212064	0.0158915	0.113017	0.109464
chr8	23531684	23531764	3715124	0	+	0.45	(0.44,0.476]	chr8	345216	1	EXON_LNCRNA	EXON_LNCRNA:INTRON	SLC25A37	ENSG00000147454.14	ENST00000519973.6:ENST00000290075.10:ENST00000417331.6:ENST00000518881.5:ENST00000519192.1:ENST00000520654.1:ENST00000523930.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	44	2	2.27304	2.47438	2.67572	0.0212064	0.0158915	0.113017	0.109464
chr2	28935020	28935120	725595	0	+	0.32	(0.28,0.32]	chr2	83855	1	SS3_PROX	SS3_PROX:INTRON	WDR43	ENSG00000163811.12	ENST00000407426.8:ENST00000466067.1:ENST00000446643.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	57	2	2.39347	2.47434	2.55521	0.0504457	0.0067419	0.156383	0.0739405
chr3	99819742	99819842	1461919	0	+	0.48	(0.476,0.515]	chr3	153488	13	INTRON	INTRON	CMSS1	ENSG00000184220.12	ENST00000463526.1:ENST00000421999.8:ENST00000491299.5:ENST00000496116.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	81	2	2.10798	2.47433	2.84068	0.00628634	0.00217133	0.0722266	0.0417893
chr6	143175676	143175776	2976336	0	+	0.34	(0.32,0.35]	chr6	279149	101	INTRON	INTRON	AIG1	ENSG00000146416.19	ENST00000367601.8:ENST00000447498.5:ENST00000646199.1:ENST00000357847.9:ENST00000629020.2:ENST00000275235.8:ENST00000494282.6:ENST00000458219.1:ENST00000470265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	54	2	2.30731	2.4743000000000004	2.64129	0.0222819	0.0176772	0.124303	0.10525
chr5	57176018	57176114	2358075	0	+	0.333333	(0.32,0.35]	chr5	227559	7	UTR5	UTR5:EXON_MRNA	GPBP1	ENSG00000062194.16	ENST00000424459.7:ENST00000514387.6:ENST00000506184.7:ENST00000511209.5	protein_coding	protein_coding	protein_coding	protein_coding	20	318	2	2.36529	2.474285	2.58328	5.32951e-4	4.23989e-5	0.0213454	0.00526976
chr14	102664999	102665099	5823257	0	+	0.49	(0.476,0.515]	chr14	552490	713	INTRON	INTRON	RCOR1	ENSG00000089902.10	ENST00000262241.7	protein_coding	protein_coding	protein_coding	protein_coding	7	90	2	1.97876	2.4742800000000003	2.9698	0.00655939	0.00124841	0.0735539	0.0323336
chr2	200882835	200882935	1310248	0	-	0.45	(0.44,0.476]	chr2	137089	4	SS3_PROX	SS3_PROX:INTRON	PPIL3	ENSG00000240344.9	ENST00000286175.12:ENST00000392283.9:ENST00000465823.5:ENST00000415562.5:ENST00000409264.6:ENST00000409361.5:ENST00000409449.5:ENST00000497263.5:ENST00000443398.5:ENST00000457063.1:ENST00000492074.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	44	2	2.14573	2.47424	2.80275	0.0238593	0.0146513	0.129075	0.0982604
chr5	141588949	141589049	2739888	0	-	0.41	(0.408,0.44]	chr5	258168	3	INTRON	INTRON	DIAPH1	ENSG00000131504.18	ENST00000647433.1:ENST00000389054.8:ENST00000518047.5:ENST00000523100.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	68	2	1.74813	2.474235	3.20034	0.0163902	0.00398025	0.109715	0.0549214
chrX	135538150	135538249	7725697	0	+	0.353535	(0.35,0.378]	chrX	790370	165	INTRON	INTRON	INTS6L	ENSG00000165359.16	ENST00000370752.4:ENST00000481908.5:ENST00000639893.2:ENST00000493637.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	66	2	1.7339	2.47423	3.21456	0.0260366	0.00420814	0.133676	0.0572185
chr16	2516070	2516168	6278680	0	+	0.428571	(0.408,0.44]	chr16	600551	13	INTRON	INTRON	ATP6V0C	ENSG00000185883.12	ENST00000330398.9:ENST00000568562.1:ENST00000565223.1	protein_coding	protein_coding	protein_coding	protein_coding	9	123	2	1.83931	2.474115	3.10892	0.00806984	1.71592e-4	0.0806514	0.0120276
chr22	21509242	21509342	7560183	0	-	0.53	(0.515,0.57]	chr22	773318	168	INTRON	INTRON	PI4KAP2	ENSG00000183506.17	ENST00000450651.5:ENST00000467443.5:ENST00000479693.1:ENST00000476537.1:ENST00000491562.5	transcribed_unitary_pseudogene	retained_intron	transcribed_unitary_pseudogene	retained_intron:processed_transcript	4	46	2	1.69407	2.474095	3.25412	0.0459452	0.00224554	0.149888	0.0435144
chr1	100289302	100289402	172507	0	+	0.51	(0.476,0.515]	chr1	18774	17	INTRON	INTRON	RTCA	ENSG00000137996.13	ENST00000370128.9:ENST00000260563.4	protein_coding	protein_coding	protein_coding	protein_coding	12	164	2	1.87075	2.474045	3.07734	0.00621846	1.61201e-5	0.0680637	0.00303526
chr12	122606706	122606805	5241444	0	+	0.323232	(0.32,0.35]	chr12	497848	9	INTRON	INTRON	KNTC1	ENSG00000184445.12	ENST00000450485.6:ENST00000333479.12:ENST00000436959.7:ENST00000546125.1	protein_coding	protein_coding	protein_coding	protein_coding	2	38	2	2.30673	2.47401	2.64129	0.0584434	0.0222819	0.167723	0.124303
chr18	55563207	55563307	6978445	0	-	0.33	(0.32,0.35]	chr18	690445	99	INTRON	INTRON	TCF4	ENSG00000196628.20	ENST00000354452.8:ENST00000616053.4:ENST00000636400.2:ENST00000356073.8:ENST00000636751.2:ENST00000635822.2:ENST00000637115.2:ENST00000638154.3:ENST00000564999.5:ENST00000629387.2:ENST00000568673.5:ENST00000540999.5:ENST00000537578.5:ENST00000568740.5:ENST00000565018.6:ENST00000566279.5:ENST00000566286.5:ENST00000567880.5:ENST00000398339.5:ENST00000564403.6:ENST00000627136.2:ENST00000566514.5:ENST00000630319.2:ENST00000568169.5:ENST00000565908.6:ENST00000627685.2:ENST00000626595.2:ENST00000626425.2:ENST00000563824.5:ENST00000568147.5:ENST00000563888.6:ENST00000564343.5:ENST00000627784.2:ENST00000562543.5:ENST00000562847.5:ENST00000569357.4:ENST00000674598.1:ENST00000627320.2:ENST00000630224.2:ENST00000565124.4:ENST00000627568.2:ENST00000637941.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	38	2	2.30673	2.47401	2.64129	0.0584434	0.0222819	0.167723	0.124303
chr7	135491183	135491283	3648772	0	-	0.35	(0.32,0.35]	chr7	339187	524	INTRON	INTRON	CNOT4	ENSG00000080802.20	ENST00000541284.6:ENST00000451834.5:ENST00000423368.6:ENST00000361528.8:ENST00000428680.6:ENST00000315544.6:ENST00000491203.5:ENST00000498534.5:ENST00000465721.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	38	2	2.30673	2.47401	2.64129	0.0584434	0.0222819	0.167723	0.124303
chr7	156733676	156733768	3686402	0	-	0.336957	(0.32,0.35]	chr7	342012	1	SS5_PROX	SS5_PROX:INTRON	LMBR1	ENSG00000105983.23	ENST00000353442.10:ENST00000448926.5:ENST00000415428.5:ENST00000454132.5:ENST00000434503.5:ENST00000461603.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	38	2	2.30673	2.47401	2.64129	0.0584434	0.0222819	0.167723	0.124303
chr3	141882756	141882856	1526136	0	+	0.47	(0.44,0.476]	chr3	159005	48	INTRON	INTRON	ATP1B3	ENSG00000069849.11	ENST00000475483.5:ENST00000465172.5:ENST00000286371.8:ENST00000466678.5:ENST00000462082.1:ENST00000495216.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	55	2	1.98938	2.47399	2.9586	0.0198602	0.00758318	0.109608	0.0773151
chr21	39215762	39215862	7464532	0	-	0.44	(0.408,0.44]	chr21	760415	4	SS3_PROX	SS3_PROX:INTRON	BRWD1	ENSG00000185658.14	ENST00000333229.6:ENST00000342449.8:ENST00000446924.5:ENST00000380800.7:ENST00000424441.1:ENST00000473813.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	72	2	1.96534	2.47397	2.9826	0.0216499	9.23082e-4	0.11491	0.0278392
chr10	35453261	35453360	4425674	0	+	0.232323	[0,0.28]	chr10	407912	187	INTRON	INTRON	CCNY	ENSG00000108100.18	ENST00000374706.5:ENST00000490012.6:ENST00000493157.6:ENST00000374704.8:ENST00000265375.13:ENST00000339497.7:ENST00000492478.5:ENST00000470025.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	47	2	2.44242	2.47396	2.5055	0.0491024	0.0359431	0.155269	0.152322
chr12	53189080	53189179	5141905	0	+	0.424242	(0.408,0.44]	chr12	485094	16	UTR3	UTR3:EXON_MRNA	ZNF740	ENSG00000139651.11	ENST00000416904.5	protein_coding	protein_coding	protein_coding	protein_coding	5	72	2	2.1226	2.473855	2.82511	0.012812	0.00189528	0.0926667	0.0402736
chr6	150161983	150162083	2996965	0	+	0.36	(0.35,0.378]	chr6	280443	181	INTRON	INTRON	PPP1R14C	ENSG00000198729.5	ENST00000361131.5	protein_coding	protein_coding	protein_coding	protein_coding	4	60	2	1.95579	2.47376	2.99173	0.0234538	0.00713365	0.11867	0.0756118
chr1	246177549	246177649	677408	0	-	0.37	(0.35,0.378]	chr1	79721	813	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000391836.3:ENST00000453676.5:ENST00000462422.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	78	2	2.28182	2.47375	2.66568	0.00637232	0.00496487	0.0724821	0.0615009
chr1	213062506	213062606	310812	0	+	0.41	(0.408,0.44]	chr1	35901	106	INTRON	INTRON	RPS6KC1	ENSG00000136643.12	ENST00000615329.4:ENST00000543354.5:ENST00000614059.4:ENST00000543470.5:ENST00000366960.8:ENST00000366959.4	protein_coding	protein_coding	protein_coding	protein_coding	13	186	2	2.10638	2.4737299999999998	2.84108	0.00465298	1.27192e-5	0.0600108	0.00265846
chr7	102568484	102568584	3588838	0	-	0.58	(0.57,1]	chr7	335044	3	SS3_PROX	SS3_PROX:INTRON	POLR2J3	ENSG00000168255.20:ENSG00000285437.2	ENST00000489144.5:ENST00000464525.5:ENST00000379340.9:ENST00000486319.5:ENST00000513506.6:ENST00000508848.5:ENST00000506060.5:ENST00000502415.5:ENST00000507355.5:ENST00000608621.5:ENST00000511313.5:ENST00000504157.5:ENST00000508910.5:ENST00000621093.4:ENST00000443430.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	29	2	1.67986	2.4737299999999998	3.2676	0.0496395	0.00176203	0.174685	0.0376652
chr9	111920621	111920721	4184692	0	+	0.45	(0.44,0.476]	chr9	381696	44	INTRON	INTRON	UGCG	ENSG00000148154.10	ENST00000374279.4:ENST00000495085.1:ENST00000490110.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	80	2	1.59515	2.47371	3.35227	0.0165796	0.0022005699999999998	0.110511	0.0417893
chr2	65097570	65097670	1142636	0	-	0.37	(0.35,0.378]	chr2	122175	2	SS5_PROX	SS5_PROX:INTRON	RAB1A	ENSG00000138069.18	ENST00000649427.1:ENST00000494188.1:ENST00000409784.8:ENST00000409892.5:ENST00000409751.1:ENST00000398529.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	103	2	2.46103	2.47363	2.48623	0.00938784	7.11486e-4	0.0817766	0.0243015
chr11	118787601	118787699	5046336	0	-	0.326531	(0.32,0.35]	chr11	475805	12	EXON_MRNA	EXON_MRNA:INTRON	DDX6	ENSG00000110367.14	ENST00000534980.7:ENST00000620157.4:ENST00000526070.2:ENST00000525082.1:ENST00000531971.1:ENST00000533239.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	56	2	2.46027	2.4736000000000002	2.48693	0.0338094	0.0108973	0.146709	0.0873034
chr7	32729011	32729109	3304193	0	+	0.683673	(0.57,1]	chr7	306855	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ZNRF2P1	ENSG00000237004.4	ENST00000650302.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	3	25	2	2.42282	2.4734350000000003	2.52405	0.0263139	0.00879576	0.133676	0.0790073
chr1	203812406	203812506	296848	0	+	0.37	(0.35,0.378]	chr1	34134	90	INTRON	INTRON	ZC3H11A:ZBED6	ENSG00000058673.17:ENSG00000257315.3	ENST00000367210.3:ENST00000453771.5:ENST00000432282.5:ENST00000638800.1:ENST00000367214.5:ENST00000639812.1:ENST00000367212.7:ENST00000332127.8:ENST00000550078.2:ENST00000495527.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	74	2	1.81752	2.4732849999999997	3.12905	0.0130467	0.00566312	0.0994973	0.0653997
chr13	95285081	95285181	5639716	0	-	0.45	(0.44,0.476]	chr13	537181	153	INTRON	INTRON	ABCC4	ENSG00000125257.16	ENST00000645237.2:ENST00000643051.1:ENST00000643842.1:ENST00000646439.1:ENST00000643816.1:ENST00000536256.3:ENST00000643556.1:ENST00000629385.1:ENST00000642524.1:ENST00000645532.1:ENST00000644471.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	60	2	2.39003	2.47326	2.55649	0.0106488	0.00670547	0.0915714	0.0707084
chr16	85562856	85562956	6415460	0	+	0.49	(0.476,0.515]	chr16	615470	61	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	7	90	2	1.94611	2.47323	3.00035	0.0075261	0.00109036	0.0773151	0.0303873
chr6	147221557	147221657	2988879	0	+	0.35	(0.32,0.35]	chr6	280001	151	INTRON	INTRON	STXBP5	ENSG00000164506.15	ENST00000321680.11:ENST00000367481.7:ENST00000546097.5:ENST00000367480.7	protein_coding	protein_coding	protein_coding	protein_coding	7	119	2	2.0893	2.4732000000000003	2.8571	0.00738971	8.26213e-4	0.0769106	0.0265898
chr3	177195100	177195197	1872426	0	-	0.340206	(0.32,0.35]	chr3	187442	11	INTRON	INTRON	TBL1XR1	ENSG00000177565.18	ENST00000457928.7:ENST00000430069.5:ENST00000673974.1:ENST00000352800.10:ENST00000422442.6:ENST00000428970.5:ENST00000424913.5:ENST00000437738.5:ENST00000431421.5:ENST00000635794.1:ENST00000630796.2:ENST00000450267.5:ENST00000630833.2:ENST00000431674.5:ENST00000422066.5:ENST00000443315.5:ENST00000627825.2:ENST00000427349.5:ENST00000413084.5:ENST00000491623.2:ENST00000637544.1:ENST00000636187.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	11	178	2	2.12289	2.473185	2.82348	0.00371168	1.09224e-4	0.0535094	0.00884858
chr10	95905821	95905916	4671867	0	-	0.347368	(0.32,0.35]	chr10	430584	5	INTRON	INTRON	ENTPD1-AS1	ENSG00000226688.8	ENST00000669711.1:ENST00000416301.5:ENST00000661375.1:ENST00000653870.1:ENST00000451364.5:ENST00000671323.1:ENST00000666945.1:ENST00000665049.1:ENST00000669099.1:ENST00000655193.1:ENST00000657446.1:ENST00000664887.1:ENST00000671110.1:ENST00000669283.1:ENST00000662079.1:ENST00000661794.1:ENST00000656604.1:ENST00000414006.2:ENST00000449419.6:ENST00000667309.1:ENST00000452942.6:ENST00000452728.5:ENST00000427300.1	lncRNA	lncRNA	lncRNA	lncRNA	2	39	2	2.31405	2.4730749999999997	2.6321	0.0517107	0.0268	0.176696	0.123349
chr21	32367155	32367255	7438549	0	-	0.35	(0.32,0.35]	chr21	758898	4	SS3_PROX	SS3_PROX:INTRON	URB1	ENSG00000142207.7	ENST00000382751.4	protein_coding	protein_coding	protein_coding	protein_coding	2	39	2	2.31405	2.4730749999999997	2.6321	0.0517107	0.0268	0.176696	0.123349
chr7	12690194	12690289	3285873	0	+	0.347368	(0.32,0.35]	chr7	305191	15	UTR3	UTR3:EXON_MRNA	ARL4A	ENSG00000122644.13	ENST00000396663.2:ENST00000651779.1	protein_coding	protein_coding	protein_coding	protein_coding	2	39	2	2.31405	2.4730749999999997	2.6321	0.0517107	0.0268	0.176696	0.123349
chr16	70407679	70407778	6511150	0	-	0.474747	(0.44,0.476]	chr16	630689	62	INTRON	INTRON	ST3GAL2	ENSG00000157350.13	ENST00000342907.3:ENST00000566097.1:ENST00000561708.1:ENST00000567586.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	83	2	2.12263	2.47307	2.82351	0.00692375	0.00191049	0.0718189	0.0403772
chrX	19354090	19354190	7629295	0	+	0.5	(0.476,0.515]	chrX	781184	2	SS3_PROX	SS3_PROX:INTRON	PDHA1	ENSG00000131828.14	ENST00000540249.5:ENST00000696704.1:ENST00000696705.1:ENST00000422285.7:ENST00000423505.6:ENST00000355808.10:ENST00000379805.4:ENST00000417819.6:ENST00000479146.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	121	2	1.47841	2.473035	3.46766	0.0203979	7.4323e-5	0.110792	0.00719723
chr7	12375081	12375154	3485141	0	-	0.424658	(0.408,0.44]	chr7	325926	2	CDS	CDS:EXON_MRNA:INTRON	VWDE	ENSG00000146530.15	ENST00000275358.8:ENST00000452576.6:ENST00000521169.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	153	2	2.36583	2.473015	2.5802	6.26455e-4	5.11085e-4	0.0225401	0.020816
chr17	62042379	62042479	6810651	0	-	0.53	(0.515,0.57]	chr17	672946	64	INTRON	INTRON	MED13	ENSG00000108510.10	ENST00000397786.7	protein_coding	protein_coding	protein_coding	protein_coding	6	58	2	1.69047	2.47297	3.25547	0.0195683	0.00261721	0.120063	0.0455413
chr17	38852131	38852225	6765122	0	-	0.531915	(0.515,0.57]	chr17	665397	6	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	RPL23	ENSG00000125691.14	ENST00000479035.7:ENST00000394333.5:ENST00000394332.5:ENST00000584912.5:ENST00000245857.9:ENST00000577407.5:ENST00000470646.1:ENST00000378096.3:ENST00000577760.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	65	2	1.81744	2.472945	3.12845	0.031028	4.79786e-4	0.143457	0.0203136
chr19	1225195	1225292	6994401	0	+	0.494845	(0.476,0.515]	chr19	692934	16	UTR3	UTR3:EXON_MRNA:INTRON	STK11	ENSG00000118046.17	ENST00000326873.12:ENST00000589152.5:ENST00000585465.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	18	230	2	2.24768	2.47294	2.6982	1.97988e-4	1.45791e-4	0.0122787	0.0110354
chr2	39279771	39279871	1102691	0	-	0.48	(0.476,0.515]	chr2	118370	1	SS5_PROX	SS5_PROX:INTRON	MAP4K3	ENSG00000011566.15	ENST00000263881.8:ENST00000437545.5:ENST00000341681.9	protein_coding	protein_coding	protein_coding	protein_coding	2	33	2	2.13854	2.472915	2.80729	0.0776563	0.0126008	0.196285	0.0980703
chr3	48528354	48528454	1688621	0	-	0.51	(0.476,0.515]	chr3	172531	23	INTRON	INTRON	PFKFB4	ENSG00000114268.12	ENST00000232375.8:ENST00000490115.5:ENST00000383734.6:ENST00000416568.5:ENST00000417753.5:ENST00000445633.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	33	2	2.13854	2.472915	2.80729	0.0776563	0.0126008	0.196285	0.0980703
chr2	108591901	108592000	846425	0	+	0.474747	(0.44,0.476]	chr2	94676	29	INTRON	INTRON	LIMS1	ENSG00000169756.17	ENST00000695516.1:ENST00000544547.6:ENST00000695517.1:ENST00000695518.1:ENST00000695519.1:ENST00000332345.10:ENST00000695520.1:ENST00000393310.5:ENST00000695521.1	protein_coding	protein_coding	protein_coding	protein_coding	5	62	2	1.43625	2.472895	3.50954	0.063142	0.00116647	0.197183	0.0312127
chr7	121050613	121050699	3394259	0	+	0.465116	(0.44,0.476]	chr7	317692	3	SS3_PROX	SS3_PROX:INTRON	CPED1	ENSG00000106034.18	ENST00000340646.9:ENST00000310396.10:ENST00000428526.5:ENST00000495036.5:ENST00000450913.6:ENST00000520801.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	62	2	1.43625	2.472895	3.50954	0.063142	0.00116647	0.197183	0.0312127
chr9	131133409	131133509	4215702	0	+	0.45	(0.44,0.476]	chr9	386535	2	SS5_PROX	SS5_PROX:INTRON	NUP214	ENSG00000126883.19	ENST00000695497.1:ENST00000695498.1:ENST00000695496.1:ENST00000695495.1:ENST00000695494.1:ENST00000695493.1:ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000525561.2:ENST00000651022.1:ENST00000695499.1:ENST00000530843.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	109	2	2.17407	2.47288	2.77169	0.00272014	8.89744e-4	0.0481508	0.0274757
chr11	74874195	74874295	4988452	0	-	0.36	(0.35,0.378]	chr11	471326	102	INTRON	INTRON	XRRA1	ENSG00000166435.16	ENST00000530562.5:ENST00000340360.10:ENST00000321448.12:ENST00000684022.1:ENST00000531849.5:ENST00000527087.5:ENST00000531449.5:ENST00000529926.1:ENST00000528819.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	48	2	2.10859	2.4728399999999997	2.83709	0.0272722	0.01435	0.136494	0.0966737
chr12	22634360	22634459	5094834	0	+	0.363636	(0.35,0.378]	chr12	481224	83	INTRON	INTRON	ETNK1	ENSG00000139163.16	ENST00000671733.1:ENST00000335148.8:ENST00000672951.1:ENST00000266517.9:ENST00000538218.2:ENST00000673496.1:ENST00000673406.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	48	2	2.10859	2.4728399999999997	2.83709	0.0272722	0.01435	0.136494	0.0966737
chr6	161064011	161064110	3025218	0	+	0.40404	(0.378,0.408]	chr6	282325	137	INTRON	INTRON	MAP3K4	ENSG00000085511.20	ENST00000366919.6:ENST00000392142.9:ENST00000542952.5:ENST00000366920.6:ENST00000348824.11:ENST00000544041.5:ENST00000490904.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	125	2	1.97139	2.472835	2.97428	0.00460762	3.71504e-4	0.0625743	0.0178698
chr3	128480093	128480189	1813539	0	-	0.291667	(0.28,0.32]	chr3	182206	8	UTR3	UTR3:EXON_MRNA	GATA2	ENSG00000179348.13	ENST00000341105.7:ENST00000696466.1:ENST00000696672.1:ENST00000430265.6:ENST00000489987.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	104	2	2.25951	2.472765	2.68602	0.0055712	0.00397414	0.0649112	0.0577209
chr19	4437298	4437397	7002126	0	+	0.555556	(0.515,0.57]	chr19	694580	34	INTRON	INTRON	CHAF1A	ENSG00000167670.16	ENST00000301280.10	protein_coding	protein_coding	protein_coding	protein_coding	4	46	2	1.75372	2.47275	3.19178	0.0386904	0.00289534	0.14279	0.0494641
chr22	20537913	20538013	7479656	0	+	0.44	(0.408,0.44]	chr22	762972	3	INTRON	INTRON	MED15	ENSG00000099917.17	ENST00000445987.5:ENST00000444094.5:ENST00000414658.5:ENST00000486656.5:ENST00000433831.5:ENST00000432052.5:ENST00000292733.11:ENST00000263205.11:ENST00000477824.5:ENST00000406969.5:ENST00000382974.6:ENST00000441501.5:ENST00000445189.5:ENST00000451058.5:ENST00000473028.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	54	2	1.74108	2.472725	3.20437	0.0424099	0.00306596	0.148082	0.0509893
chr11	46843622	46843722	4948740	0	-	0.59	(0.57,1]	chr11	463857	169	INTRON	INTRON	CKAP5	ENSG00000175216.15	ENST00000529230.6:ENST00000312055.9:ENST00000525248.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	24	2	2.28103	2.472705	2.66438	0.0171563	0.0151554	0.108535	0.104099
chr2	134949777	134949875	872559	0	+	0.571429	(0.57,1]	chr2	97703	15	INTRON	INTRON	CCNT2	ENSG00000082258.13	ENST00000419781.5:ENST00000446247.5:ENST00000264157.10:ENST00000452839.5:ENST00000295238.10:ENST00000452521.1:ENST00000438691.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	24	2	2.28103	2.472705	2.66438	0.0171563	0.0151554	0.108535	0.104099
chr21	46268545	46268642	7471251	0	-	0.649485	(0.57,1]	chr21	761661	6	INTRON	INTRON	MCM3AP	ENSG00000160294.11	ENST00000397708.1:ENST00000291688.6	protein_coding	protein_coding	protein_coding	protein_coding	3	24	2	2.28103	2.472705	2.66438	0.0171563	0.0151554	0.108535	0.104099
chr15	49223936	49224032	6019656	0	+	0.395833	(0.378,0.408]	chr15	573713	4	INTRON	INTRON	GALK2	ENSG00000156958.15	ENST00000559883.5:ENST00000559963.5:ENST00000327171.7:ENST00000560654.5:ENST00000558775.5:ENST00000559040.1:ENST00000396509.6:ENST00000558956.5:ENST00000559208.5:ENST00000560031.6:ENST00000560119.5:ENST00000558145.5:ENST00000544523.5:ENST00000560138.5:ENST00000559423.5:ENST00000559454.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	46	2	2.41037	2.4726999999999997	2.53503	0.0319942	0.0100185	0.13174	0.0880217
chr15	92973209	92973306	6104449	0	+	0.381443	(0.378,0.408]	chr15	581512	4	INTRON	INTRON	CHD2	ENSG00000173575.22	ENST00000626874.2:ENST00000394196.9:ENST00000635856.1:ENST00000637572.1:ENST00000636881.1:ENST00000628118.1:ENST00000625463.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	65	2	2.15574	2.4726	2.78946	0.0158859	0.00519611	0.101453	0.0654762
chr16	87868186	87868285	6539085	0	-	0.565657	(0.515,0.57]	chr16	633647	47	INTRON	INTRON	SLC7A5	ENSG00000103257.9	ENST00000261622.5	protein_coding	protein_coding	protein_coding	protein_coding	9	106	2	2.42476	2.4725799999999998	2.5204	9.8022e-4	6.76573e-4	0.0285591	0.0236287
chr6	85629991	85630090	3151317	0	-	0.393939	(0.378,0.408]	chr6	293889	55	INTRON	INTRON	ENSG00000271793:SYNCRIP	ENSG00000271793.2:ENSG00000135316.19	ENST00000682083.1:ENST00000683074.1:ENST00000681965.1:ENST00000682504.1:ENST00000682106.1:ENST00000683364.1:ENST00000683436.1:ENST00000684220.1:ENST00000683909.1:ENST00000684462.1:ENST00000616122.5:ENST00000678528.1:ENST00000676637.1:ENST00000677771.1:ENST00000355238.11:ENST00000678878.1:ENST00000677481.1:ENST00000677646.1:ENST00000676630.1:ENST00000678618.1:ENST00000676542.1:ENST00000677059.1:ENST00000444272.2:ENST00000678899.1:ENST00000369622.8:ENST00000678355.1:ENST00000676688.1:ENST00000677514.1:ENST00000678816.1:ENST00000678930.1:ENST00000678589.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	63	2	1.66594	2.4725799999999998	3.27922	0.0320222	0.00312717	0.144995	0.0499153
chr7	112780729	112780827	3624307	0	-	0.346939	(0.32,0.35]	chr7	337160	22	INTRON	INTRON	TMEM168	ENSG00000146802.13	ENST00000312814.11:ENST00000454074.5:ENST00000447395.5:ENST00000418785.5:ENST00000449743.1:ENST00000441474.1	protein_coding	protein_coding	protein_coding	protein_coding	7	106	2	2.10434	2.47255	2.84076	0.00423324	0.0027933	0.0595557	0.0469265
chr1	227282705	227282805	651363	0	-	0.34	(0.32,0.35]	chr1	77110	176	INTRON	INTRON	CDC42BPA	ENSG00000143776.20	ENST00000366766.8:ENST00000366769.7:ENST00000334218.9:ENST00000366767.7:ENST00000366764.8:ENST00000478573.6:ENST00000682551.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	52	2	2.4458	2.472545	2.49929	0.0425977	0.00776612	0.148082	0.0787356
chr10	133410927	133411026	4540388	0	+	0.333333	(0.32,0.35]	chr10	419095	78	INTRON	INTRON	MTG1	ENSG00000148824.19	ENST00000477902.6:ENST00000317502.11:ENST00000432508.3:ENST00000460848.5:ENST00000473735.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	52	2	2.4458	2.472545	2.49929	0.0425977	0.00776612	0.148082	0.0787356
chr20	50924064	50924163	7355805	0	-	0.363636	(0.35,0.378]	chr20	750105	49	INTRON	INTRON	ADNP	ENSG00000101126.18	ENST00000621696.5:ENST00000673732.1:ENST00000396029.8:ENST00000644386.1:ENST00000396032.8:ENST00000645081.1:ENST00000642364.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	141	2	1.91024	2.472525	3.03481	0.00458484	3.07347e-4	0.0622822	0.0161362
chr11	46839929	46840029	4948703	0	-	0.47	(0.44,0.476]	chr11	463857	132	INTRON	INTRON	CKAP5	ENSG00000175216.15	ENST00000529230.6:ENST00000312055.9:ENST00000525248.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	54	2	1.85904	2.472475	3.08591	0.029889	0.00481262	0.129138	0.0638089
chr8	123236901	123237000	4041436	0	-	0.59596	(0.57,1]	chr8	368578	48	INTRON	INTRON	C8orf76:ZHX1-C8orf76	ENSG00000189376.12:ENSG00000259305.6	ENST00000276704.6:ENST00000519791.5:ENST00000357082.8:ENST00000521310.5:ENST00000518996.1:ENST00000622816.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	24	2	2.05026	2.472445	2.89463	0.0321326	0.00788262	0.145026	0.076155
chr7	72919394	72919490	3330193	0	+	0.354167	(0.35,0.378]	chr7	309572	3	EXON_LNCRNA	EXON_LNCRNA:INTRON	POM121:ENSG00000289042	ENSG00000196313.13:ENSG00000289042.1	ENST00000627934.3:ENST00000395270.5:ENST00000689827.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	5	66	2	1.86055	2.47243	3.08431	0.0168498	0.0065853	0.11068	0.0701901
chr11	64214907	64215005	4802332	0	+	0.489796	(0.476,0.515]	chr11	445346	28	INTRON	INTRON	FERMT3	ENSG00000149781.13	ENST00000544997.5:ENST00000345728.10:ENST00000279227.9:ENST00000541326.5:ENST00000546255.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	33	2	2.38442	2.472375	2.56033	0.0417472	0.0287634	0.161736	0.127066
chr15	30928164	30928261	5994162	0	+	0.494845	(0.476,0.515]	chr15	569884	24	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	FAN1	ENSG00000198690.10	ENST00000667837.1:ENST00000656435.1:ENST00000654056.1:ENST00000657391.1:ENST00000670849.1:ENST00000655421.1:ENST00000664070.1:ENST00000664837.1:ENST00000670074.1:ENST00000565280.5:ENST00000656307.1:ENST00000362065.9:ENST00000602886.2:ENST00000661974.1:ENST00000562881.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	33	2	2.38442	2.472375	2.56033	0.0417472	0.0287634	0.161736	0.127066
chr16	1498549	1498639	6274370	0	+	0.488889	(0.476,0.515]	chr16	599299	7	INTRON	INTRON	TELO2	ENSG00000100726.15	ENST00000497339.6:ENST00000262319.11	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	33	2	2.38442	2.472375	2.56033	0.0417472	0.0287634	0.161736	0.127066
chr17	18914341	18914440	6570320	0	+	0.50505	(0.476,0.515]	chr17	638876	27	INTRON	INTRON	PRPSAP2	ENSG00000141127.15	ENST00000610773.4:ENST00000432893.6:ENST00000492129.5:ENST00000419071.6:ENST00000536323.5:ENST00000412418.5:ENST00000268835.7:ENST00000395656.6:ENST00000455992.6:ENST00000542013.5:ENST00000574451.5:ENST00000460724.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	33	2	2.38442	2.472375	2.56033	0.0417472	0.0287634	0.161736	0.127066
chr20	35705830	35705928	7336168	0	-	0.326531	(0.32,0.35]	chr20	747400	1	INTRON	INTRON	RBM39	ENSG00000131051.24	ENST00000253363.11:ENST00000639702.1:ENST00000656873.1:ENST00000463004.5:ENST00000361162.10:ENST00000461283.5:ENST00000403542.6:ENST00000338163.10:ENST00000528062.7:ENST00000429968.5:ENST00000444878.5:ENST00000665058.1:ENST00000476806.5:ENST00000495293.5:ENST00000492779.5:ENST00000482563.1:ENST00000496183.5:ENST00000465158.5:ENST00000448303.5:ENST00000470563.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	64	2	2.37199	2.4723100000000002	2.57263	0.0312297	0.00465833	0.13151	0.0629753
chr1	150459559	150459659	222658	0	+	0.4	(0.378,0.408]	chr1	25099	1	SS3_PROX	SS3_PROX:INTRON	RPRD2	ENSG00000163125.16	ENST00000492220.1:ENST00000369068.5:ENST00000401000.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	46	2	2.04292	2.47227	2.90162	0.0326035	0.0113157	0.145164	0.0886121
chr22	19101866	19101966	7551809	0	-	0.46	(0.44,0.476]	chr22	771903	120	INTRON	INTRON	DGCR2	ENSG00000070413.20	ENST00000537045.5:ENST00000545799.5:ENST00000263196.12:ENST00000389262.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	72	2	2.12992	2.47227	2.81462	0.010975	0.00247064	0.092635	0.0446195
chr1	121375254	121375354	207975	0	+	0.35	(0.32,0.35]	chr1	22801	3	SS5_PROX	SS5_PROX:INTRON	SRGAP2C	ENSG00000171943.12	ENST00000367123.8:ENST00000304465.7	protein_coding	protein_coding	protein_coding	protein_coding	2	38	2	2.23182	2.4722549999999996	2.71269	0.068598	0.0181461	0.184298	0.114853
chr12	108713862	108713962	5406609	0	-	0.35	(0.32,0.35]	chr12	516035	109	INTRON	INTRON	CORO1C	ENSG00000110880.11	ENST00000261401.8:ENST00000541050.5:ENST00000549384.5:ENST00000550542.5:ENST00000552871.5:ENST00000551550.5:ENST00000546571.5:ENST00000551044.1:ENST00000551059.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	38	2	2.23182	2.4722549999999996	2.71269	0.068598	0.0181461	0.184298	0.114853
chr21	39243334	39243433	7464820	0	-	0.323232	(0.32,0.35]	chr21	760470	44	INTRON	INTRON	BRWD1	ENSG00000185658.14	ENST00000333229.6:ENST00000342449.8:ENST00000446924.5:ENST00000380800.7:ENST00000430093.5:ENST00000445245.5:ENST00000445668.5:ENST00000412604.1:ENST00000455867.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	38	2	2.23182	2.4722549999999996	2.71269	0.068598	0.0181461	0.184298	0.114853
chr7	76351024	76351124	3562462	0	-	0.33	(0.32,0.35]	chr7	331942	204	INTRON	INTRON	YWHAG	ENSG00000170027.7	ENST00000307630.5	protein_coding	protein_coding	protein_coding	protein_coding	2	38	2	2.23182	2.4722549999999996	2.71269	0.068598	0.0181461	0.184298	0.114853
chr8	99025229	99025328	3811377	0	+	0.343434	(0.32,0.35]	chr8	353059	109	INTRON	INTRON	VPS13B	ENSG00000132549.20	ENST00000496144.5:ENST00000683334.1:ENST00000682853.1:ENST00000357162.7:ENST00000358544.7:ENST00000683619.1:ENST00000441350.2:ENST00000684269.1:ENST00000682806.1:ENST00000683869.1:ENST00000682153.1:ENST00000682358.1:ENST00000682145.1:ENST00000355155.6:ENST00000682234.1:ENST00000683486.1:ENST00000684308.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	38	2	2.23182	2.4722549999999996	2.71269	0.068598	0.0181461	0.184298	0.114853
chr20	34373264	34373364	7259207	0	+	0.46	(0.44,0.476]	chr20	737405	34	INTRON	INTRON	ITCH	ENSG00000078747.16	ENST00000486883.5:ENST00000374864.10:ENST00000535650.7:ENST00000670516.1:ENST00000658310.1:ENST00000665484.1:ENST00000664852.1:ENST00000660337.1:ENST00000665428.1:ENST00000654846.1:ENST00000262650.10:ENST00000662871.1:ENST00000665346.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	53	2	2.08211	2.47221	2.86231	0.0130715	0.012214	0.0996047	0.0910127
chr13	42320605	42320703	5477751	0	+	0.346939	(0.32,0.35]	chr13	524867	15	UTR3	UTR3:EXON_MRNA	AKAP11	ENSG00000023516.9	ENST00000025301.4	protein_coding	protein_coding	protein_coding	protein_coding	4	62	2	1.78201	2.4721900000000003	3.16237	0.0365003	0.00550276	0.153759	0.0648867
chr20	37196007	37196106	7266301	0	+	0.606061	(0.57,1]	chr20	738393	113	INTRON	INTRON	RPN2	ENSG00000118705.17	ENST00000456102.5:ENST00000373622.9:ENST00000373632.8:ENST00000237530.11:ENST00000462163.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	38	2	1.92756	2.47214	3.01672	0.0220439	5.94133e-4	0.115395	0.0221865
chr7	152659206	152659305	3681450	0	-	0.30303	(0.28,0.32]	chr7	341677	95	INTRON	INTRON	XRCC2	ENSG00000196584.3	ENST00000359321.2:ENST00000495707.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	56	2	1.86684	2.47214	3.07744	0.0605813	0.00604536	0.171122	0.0700813
chr4	126714673	126714773	2237857	0	-	0.31	(0.28,0.32]	chr4	219029	160	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	8	129	2	2.2301	2.472125	2.71415	0.005045	0.00173877	0.0621586	0.038529
chr1	28420945	28421045	56347	0	+	0.35	(0.32,0.35]	chr1	7273	131	INTRON	INTRON	PHACTR4	ENSG00000204138.13	ENST00000633371.1:ENST00000632202.1:ENST00000632421.1:ENST00000463428.5:ENST00000373839.8:ENST00000493669.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	38	2	2.37794	2.47206	2.56618	0.0498601	0.0274185	0.156383	0.136498
chr1	155414943	155415043	561405	0	-	0.34	(0.32,0.35]	chr1	67061	190	INTRON	INTRON	ASH1L	ENSG00000116539.14	ENST00000676814.1:ENST00000392403.8:ENST00000368346.7:ENST00000677213.1:ENST00000678117.1:ENST00000679097.1:ENST00000679333.1:ENST00000677042.1:ENST00000678699.1:ENST00000677825.1:ENST00000679133.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	38	2	2.37794	2.47206	2.56618	0.0498601	0.0274185	0.156383	0.136498
chr1	207077321	207077420	303100	0	+	0.333333	(0.32,0.35]	chr1	34836	51	UTR3	UTR3:EXON_MRNA:INTRON	PFKFB2	ENSG00000123836.15	ENST00000411990.6:ENST00000367080.8:ENST00000367079.3:ENST00000473310.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	38	2	2.37794	2.47206	2.56618	0.0498601	0.0274185	0.156383	0.136498
chr14	58289408	58289504	5904656	0	-	0.333333	(0.32,0.35]	chr14	560835	2	INTRON	INTRON	PSMA3-AS1	ENSG00000257621.9	ENST00000554360.5:ENST00000556002.5:ENST00000555275.5:ENST00000554378.5:ENST00000555707.5:ENST00000556400.5:ENST00000557660.5:ENST00000553657.5:ENST00000555037.1:ENST00000551597.6	lncRNA	lncRNA	lncRNA	lncRNA	2	38	2	2.37794	2.47206	2.56618	0.0498601	0.0274185	0.156383	0.136498
chr16	10449734	10449834	6286922	0	+	0.33	(0.32,0.35]	chr16	602005	89	INTRON	INTRON	ATF7IP2	ENSG00000166669.14	ENST00000396559.5:ENST00000396560.6:ENST00000543967.5:ENST00000562102.6:ENST00000535850.5:ENST00000568027.5:ENST00000324570.9:ENST00000356427.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	38	2	2.37794	2.47206	2.56618	0.0498601	0.0274185	0.156383	0.136498
chr17	62583535	62583633	6653950	0	+	0.346939	(0.32,0.35]	chr17	649412	30	INTRON	INTRON	TLK2	ENSG00000146872.19	ENST00000582809.5:ENST00000682085.1:ENST00000346027.10:ENST00000326270.13:ENST00000682203.1:ENST00000343388.11:ENST00000683536.1:ENST00000684440.1:ENST00000684772.1:ENST00000682274.1:ENST00000682827.1:ENST00000682075.1:ENST00000683104.1:ENST00000684012.1:ENST00000581041.5:ENST00000684553.1:ENST00000683737.1:ENST00000684133.1:ENST00000584367.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	38	2	2.37794	2.47206	2.56618	0.0498601	0.0274185	0.156383	0.136498
chr4	139327574	139327674	2049952	0	+	0.33	(0.32,0.35]	chr4	203286	250	INTRON	INTRON	NAA15	ENSG00000164134.13	ENST00000296543.10:ENST00000398947.1:ENST00000482087.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	38	2	2.37794	2.47206	2.56618	0.0498601	0.0274185	0.156383	0.136498
chr6	17622468	17622567	3065348	0	-	0.343434	(0.32,0.35]	chr6	284764	54	INTRON	INTRON	NUP153	ENSG00000124789.12	ENST00000613258.4:ENST00000537253.5:ENST00000262077.3	protein_coding	protein_coding	protein_coding	protein_coding	2	38	2	2.37794	2.47206	2.56618	0.0498601	0.0274185	0.156383	0.136498
chr6	147219359	147219459	2988857	0	+	0.35	(0.32,0.35]	chr6	280001	129	INTRON	INTRON	STXBP5	ENSG00000164506.15	ENST00000321680.11:ENST00000367481.7:ENST00000546097.5:ENST00000367480.7	protein_coding	protein_coding	protein_coding	protein_coding	2	38	2	2.37794	2.47206	2.56618	0.0498601	0.0274185	0.156383	0.136498
chr1	31001280	31001380	412246	0	-	0.43	(0.408,0.44]	chr1	49713	57	INTRON	INTRON	PUM1	ENSG00000134644.16	ENST00000426105.7:ENST00000373747.7:ENST00000257075.9:ENST00000424085.6:ENST00000525843.5:ENST00000440538.6:ENST00000373741.8:ENST00000373742.6:ENST00000526215.5:ENST00000525948.5:ENST00000480602.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	153	2	2.01063	2.4719800000000003	2.93333	0.00478395	4.01252e-5	0.0602209	0.00513517
chr11	12989160	12989257	4916073	0	-	0.505155	(0.476,0.515]	chr11	460687	3	SS5_PROX	SS5_PROX:INTRON	LINC00958	ENSG00000251381.8	ENST00000658243.1:ENST00000527945.2:ENST00000671253.1:ENST00000653758.1:ENST00000662291.1:ENST00000671577.1:ENST00000663902.1:ENST00000653958.1:ENST00000526388.2:ENST00000504230.2:ENST00000531402.6:ENST00000534477.6:ENST00000653981.1:ENST00000667588.1	lncRNA	lncRNA	lncRNA	lncRNA	5	65	2	1.99699	2.471955	2.94692	0.0110277	0.00794331	0.0873897	0.0797304
chr12	57254496	57254588	5337453	0	-	0.413043	(0.408,0.44]	chr12	510556	9	UTR3	UTR3:EXON_MRNA	R3HDM2	ENSG00000179912.21	ENST00000393811.6:ENST00000402412.6:ENST00000347140.7:ENST00000358907.6:ENST00000441731.6:ENST00000634871.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	11	148	2	2.11133	2.471895	2.83246	0.00160206	2.73516e-4	0.0367961	0.0151711
chr18	9362368	9362468	6870720	0	+	0.54	(0.515,0.57]	chr18	680672	19	INTRON	INTRON	TWSG1	ENSG00000128791.12	ENST00000583147.5:ENST00000262120.10:ENST00000581641.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	61	2	2.11384	2.47189	2.82994	0.0118599	0.00168661	0.0899583	0.0381778
chr4	82898840	82898933	2180191	0	-	0.333333	(0.32,0.35]	chr4	214424	4	INTRON	INTRON	SEC31A:THAP9-AS1	ENSG00000138674.17:ENSG00000251022.6	ENST00000355196.6:ENST00000503210.5:ENST00000507676.5:ENST00000506495.5:ENST00000507051.1:ENST00000504520.6:ENST00000504792.6:ENST00000512932.5:ENST00000511271.5:ENST00000508772.5:ENST00000513581.5:ENST00000504718.5:ENST00000505028.5:ENST00000507660.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	11	161	2	1.60167	2.47189	3.34211	0.0179272	3.65896e-5	0.106518	0.00484751
chr1	156313115	156313214	566451	0	-	0.50505	(0.476,0.515]	chr1	67981	5	INTRON	INTRON	CCT3	ENSG00000163468.15	ENST00000295688.8:ENST00000368258.7:ENST00000368259.6:ENST00000368261.7:ENST00000368262.7:ENST00000472765.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	50	2	2.28264	2.4718799999999996	2.66112	0.0534132	0.0044598	0.179876	0.0592169
chr9	124623107	124623207	4347733	0	-	0.48	(0.476,0.515]	chr9	399255	274	INTRON	INTRON	NR6A1	ENSG00000148200.17	ENST00000487099.7:ENST00000373584.7:ENST00000416460.6:ENST00000344523.8	protein_coding	protein_coding	protein_coding	protein_coding	3	50	2	2.28264	2.4718799999999996	2.66112	0.0534132	0.0044598	0.179876	0.0592169
chr13	48089751	48089851	5590703	0	-	0.29	(0.28,0.32]	chr13	534279	29	INTRON	INTRON	MED4	ENSG00000136146.15	ENST00000258648.7:ENST00000378586.5:ENST00000417167.2	protein_coding	protein_coding	protein_coding	protein_coding	3	56	2	2.42868	2.47178	2.51488	0.0380957	0.0105331	0.141678	0.0908969
chr17	62581378	62581476	6653928	0	+	0.306122	(0.28,0.32]	chr17	649412	8	INTRON	INTRON	TLK2	ENSG00000146872.19	ENST00000582809.5:ENST00000682085.1:ENST00000346027.10:ENST00000326270.13:ENST00000682203.1:ENST00000343388.11:ENST00000683536.1:ENST00000684440.1:ENST00000684772.1:ENST00000682274.1:ENST00000682827.1:ENST00000682075.1:ENST00000683104.1:ENST00000684012.1:ENST00000581041.5:ENST00000684553.1:ENST00000683737.1:ENST00000684133.1:ENST00000584367.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	56	2	2.42868	2.47178	2.51488	0.0380957	0.0105331	0.141678	0.0908969
chr19	21453423	21453522	7158738	0	-	0.30303	(0.28,0.32]	chr19	723692	15	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ENSG00000268119	ENSG00000268119.7	ENST00000596705.5:ENST00000597444.6:ENST00000594557.1:ENST00000599993.7:ENST00000600469.7:ENST00000656526.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	4	68	2	1.72279	2.471765	3.22074	0.0496859	0.00362783	0.156383	0.055479
chr22	21789108	21789208	7560597	0	-	0.48	(0.476,0.515]	chr22	773369	3	SS3_PROX	SS3_PROX:INTRON	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	5	71	2	2.20789	2.471765	2.73564	0.00820497	0.00333144	0.081115	0.0512081
chr17	75220404	75220504	6674414	0	+	0.48	(0.476,0.515]	chr17	651381	17	INTRON	INTRON	NUP85	ENSG00000125450.11	ENST00000245544.9:ENST00000583948.5:ENST00000579324.5:ENST00000449421.6:ENST00000581104.5:ENST00000579298.5:ENST00000578830.5:ENST00000583877.5:ENST00000577561.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	53	2	2.11679	2.4717599999999997	2.82673	0.0134403	0.0115627	0.0962115	0.0946278
chr3	36991353	36991448	1655346	0	-	0.4	(0.378,0.408]	chr3	169863	1	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	EPM2AIP1	ENSG00000178567.8	ENST00000322716.8:ENST00000623924.1:ENST00000624586.1	protein_coding	protein_coding	protein_coding	protein_coding	6	71	2	1.36527	2.47174	3.57821	0.0587392	9.60401e-4	0.189982	0.0282401
chr17	46140927	46141027	6784345	0	-	0.34	(0.32,0.35]	chr17	669216	197	INTRON	INTRON	KANSL1	ENSG00000120071.15	ENST00000574590.6:ENST00000572904.6:ENST00000432791.7:ENST00000575318.6:ENST00000638275.1:ENST00000262419.10:ENST00000648792.1:ENST00000639531.1:ENST00000639150.1:ENST00000639853.1:ENST00000571698.2:ENST00000639375.1:ENST00000638269.1:ENST00000576248.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	116	2	1.8018	2.4716750000000003	3.14155	0.0103524	8.11889e-4	0.0896588	0.0263656
chr5	134173293	134173386	2726320	0	-	0.483871	(0.476,0.515]	chr5	256502	2	SS5_PROX	SS5_PROX:INTRON	SKP1	ENSG00000113558.19	ENST00000353411.11:ENST00000522552.5:ENST00000521216.5:ENST00000517625.5:ENST00000523966.5:ENST00000522855.5:ENST00000328392.10:ENST00000519054.5:ENST00000519321.5:ENST00000520417.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	127	2	2.00667	2.47167	2.93667	0.00273468	3.86734e-4	0.0483437	0.0182867
chr5	98907392	98907491	2683858	0	-	0.525253	(0.515,0.57]	chr5	253957	19	INTRON	INTRON	CHD1	ENSG00000153922.11	ENST00000614616.5:ENST00000284049.7	protein_coding	protein_coding	protein_coding	protein_coding	7	79	2	2.31075	2.471625	2.6325	0.00439001	0.00124389	0.0585064	0.0328153
chr7	158903789	158903889	3456611	0	+	0.28	[0,0.28]	chr7	323187	13	EXON_MRNA	EXON_MRNA:INTRON	DYNC2I1	ENSG00000126870.16	ENST00000407559.8:ENST00000444851.5:ENST00000467220.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	175	2	2.20773	2.4716	2.73547	0.002385	0.00218343	0.0449918	0.0417893
chr6	20423425	20423525	2827663	0	+	0.45	(0.44,0.476]	chr6	265575	192	INTRON	INTRON	E2F3	ENSG00000112242.16	ENST00000346618.8:ENST00000535432.2	protein_coding	protein_coding	protein_coding	protein_coding	11	152	2	2.32149	2.47157	2.62165	7.97515e-4	3.987e-4	0.0258804	0.0185763
chr19	52721467	52721567	7207348	0	-	0.57	(0.515,0.57]	chr19	731468	2	SS3_PROX	SS3_PROX:INTRON	ZNF611	ENSG00000213020.10	ENST00000540744.5:ENST00000543227.5:ENST00000453741.6:ENST00000652185.1:ENST00000595001.5:ENST00000602162.5:ENST00000319783.5:ENST00000595798.5:ENST00000601249.5:ENST00000601643.5:ENST00000600943.5:ENST00000598639.5:ENST00000597343.6:ENST00000598723.5:ENST00000640952.1:ENST00000596702.5:ENST00000601447.5:ENST00000597566.5:ENST00000599798.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	74	2	2.11384	2.4715	2.82916	0.0118599	4.25151e-4	0.0899583	0.018441
chr3	15057397	15057495	1619963	0	-	0.459184	(0.44,0.476]	chr3	167447	36	INTRON	INTRON	MRPS25	ENSG00000131368.9	ENST00000695375.1:ENST00000695376.1:ENST00000695377.1:ENST00000695378.1:ENST00000695379.1:ENST00000695380.1:ENST00000695381.1:ENST00000695382.1:ENST00000496484.2:ENST00000695334.1:ENST00000695384.1:ENST00000695322.1:ENST00000447299.2:ENST00000695383.1:ENST00000474866.2:ENST00000695385.1:ENST00000695386.1:ENST00000420267.6:ENST00000695387.1:ENST00000695388.1:ENST00000695389.1:ENST00000695390.1:ENST00000695391.1:ENST00000695392.1:ENST00000449354.7:ENST00000695393.1:ENST00000695394.1:ENST00000253686.7:ENST00000695395.1:ENST00000695323.1:ENST00000444840.6:ENST00000695396.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	81	2	1.26546	2.471425	3.67739	0.0568404	3.8961e-4	0.167723	0.0177751
chr2	111436307	111436407	1211213	0	-	0.32	(0.28,0.32]	chr2	128899	55	INTRON	INTRON	MIR4435-2HG	ENSG00000172965.17	ENST00000645030.2:ENST00000642191.1:ENST00000673798.1:ENST00000645051.2:ENST00000673649.1:ENST00000669658.1:ENST00000669917.1:ENST00000661559.1:ENST00000653687.1:ENST00000667670.1:ENST00000609220.2:ENST00000656760.1:ENST00000609902.6:ENST00000666683.1:ENST00000674070.1:ENST00000662335.1:ENST00000664422.1:ENST00000673775.1:ENST00000674092.1:ENST00000673958.1:ENST00000658936.1:ENST00000662635.1:ENST00000666204.1:ENST00000659458.1:ENST00000664443.1:ENST00000670295.1:ENST00000661655.1:ENST00000666390.1:ENST00000659079.1:ENST00000660442.1:ENST00000664009.1:ENST00000439362.6:ENST00000654473.1:ENST00000664999.1:ENST00000673728.1:ENST00000659791.1:ENST00000666144.1:ENST00000659933.1:ENST00000670715.1:ENST00000653568.1:ENST00000643013.1:ENST00000673866.1:ENST00000443467.6:ENST00000669875.1:ENST00000673653.1:ENST00000673988.1:ENST00000661945.1:ENST00000669515.1:ENST00000431385.6:ENST00000656416.1:ENST00000674037.1:ENST00000432818.5:ENST00000674013.1:ENST00000444301.5:ENST00000673964.1:ENST00000673845.1:ENST00000673756.1:ENST00000673960.1:ENST00000673804.1:ENST00000673632.1:ENST00000453478.2:ENST00000673937.1:ENST00000673654.1:ENST00000409569.2:ENST00000674087.1:ENST00000419736.5:ENST00000673840.1:ENST00000674045.1:ENST00000673821.1:ENST00000643766.1:ENST00000308604.5:ENST00000674026.1:ENST00000604981.5:ENST00000603310.5:ENST00000673894.1:ENST00000442293.5:ENST00000441075.1	lncRNA	lncRNA	lncRNA	lncRNA	3	56	2	2.0243	2.471405	2.91851	0.0364967	0.0130672	0.153759	0.093385
chr11	584570	584669	4719654	0	+	0.666667	(0.57,1]	chr11	436170	21	INTRON	INTRON	PHRF1	ENSG00000070047.13	ENST00000264555.10:ENST00000416188.3:ENST00000534320.5:ENST00000413872.6:ENST00000533464.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	24	2	2.02391	2.4714	2.91889	0.0339274	0.00719009	0.134508	0.0756118
chr3	187013804	187013903	1587015	0	+	0.59596	(0.57,1]	chr3	164349	74	INTRON	INTRON	ST6GAL1	ENSG00000073849.16	ENST00000676786.1:ENST00000169298.8:ENST00000457772.6:ENST00000455441.5:ENST00000427315.5:ENST00000677292.1:ENST00000458216.5:ENST00000430309.5:ENST00000417392.5:ENST00000438590.5:ENST00000448408.5:ENST00000676633.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	24	2	2.02391	2.4714	2.91889	0.0339274	0.00719009	0.134508	0.0756118
chr9	131404442	131404542	4217073	0	+	0.58	(0.57,1]	chr9	386720	98	INTRON	INTRON	PRRC2B	ENSG00000288701.1	ENST00000682525.1:ENST00000684596.1:ENST00000683519.1:ENST00000682501.1	protein_coding	protein_coding	protein_coding	protein_coding	3	24	2	2.02391	2.4714	2.91889	0.0339274	0.00719009	0.134508	0.0756118
chr5	10358360	10358460	2317693	0	+	0.41	(0.408,0.44]	chr5	224612	33	INTRON	INTRON	MARCHF6	ENSG00000145495.16	ENST00000274140.10:ENST00000449913.6:ENST00000502795.5:ENST00000511802.5:ENST00000503788.5:ENST00000640713.1:ENST00000510872.5:ENST00000507863.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	33	2	2.27698	2.4713849999999997	2.66579	0.0583528	0.019342	0.167723	0.119831
chr5	10704471	10704571	2567759	0	-	0.44	(0.408,0.44]	chr5	246124	205	INTRON	INTRON	DAP	ENSG00000112977.16	ENST00000230895.11:ENST00000432074.2:ENST00000514882.5:ENST00000508253.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	33	2	2.27698	2.4713849999999997	2.66579	0.0583528	0.019342	0.167723	0.119831
chr14	101788181	101788281	5818760	0	+	0.59	(0.57,1]	chr14	551825	16	INTRON	INTRON	PPP2R5C	ENSG00000078304.20	ENST00000694906.1:ENST00000422945.6:ENST00000554442.5:ENST00000556068.5:ENST00000328724.9:ENST00000554504.1:ENST00000553890.1:ENST00000553554.1:ENST00000556086.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	16	104	2	2.15399	2.47136	2.78873	2.30094e-4	5.534e-5	0.0133859	0.00651834
chrX	47229292	47229370	7655957	0	+	0.487179	(0.476,0.515]	chrX	783378	4	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	CDK16	ENSG00000102225.17	ENST00000457458.6:ENST00000357227.9:ENST00000517426.5:ENST00000276052.10:ENST00000462827.2	protein_coding	protein_coding	protein_coding	protein_coding	4	54	2	1.93059	2.47128	3.01197	0.023762	0.00633162	0.118822	0.0722266
chr6	17669746	17669846	3065836	0	-	0.41	(0.408,0.44]	chr6	284851	2	SS3_PROX	SS3_PROX:INTRON	NUP153	ENSG00000124789.12	ENST00000613258.4:ENST00000537253.5:ENST00000262077.3	protein_coding	protein_coding	protein_coding	protein_coding	2	33	2	2.36073	2.47126	2.58179	0.0481658	0.024638	0.153019	0.131869
chrX	40077187	40077265	7804644	0	-	0.423077	(0.408,0.44]	chrX	795791	3	INTRON	INTRON	BCOR	ENSG00000183337.18	ENST00000413905.6:ENST00000378455.8:ENST00000397354.7:ENST00000342274.8:ENST00000615339.2:ENST00000680831.1:ENST00000378444.9:ENST00000679513.1:ENST00000672922.2:ENST00000442018.6:ENST00000673391.1:ENST00000427012.3:ENST00000406200.4:ENST00000490976.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	33	2	2.36073	2.47126	2.58179	0.0481658	0.024638	0.153019	0.131869
chr2	84980643	84980743	820358	0	+	0.48	(0.476,0.515]	chr2	91419	80	INTRON	INTRON	KCMF1	ENSG00000176407.18	ENST00000456682.1:ENST00000409785.9:ENST00000428691.5:ENST00000453448.1	protein_coding	protein_coding	protein_coding	protein_coding	6	82	2	2.09066	2.471215	2.85177	0.00772252	0.00169916	0.0756858	0.0381936
chr6	17642427	17642525	3065554	0	-	0.295918	(0.28,0.32]	chr6	284800	20	INTRON	INTRON	NUP153	ENSG00000124789.12	ENST00000613258.4:ENST00000537253.5:ENST00000262077.3	protein_coding	protein_coding	protein_coding	protein_coding	3	56	2	1.91611	2.471215	3.02632	0.0539102	0.0071944	0.164153	0.0756118
chr11	5342777	5342869	4896642	0	-	0.51087	(0.476,0.515]	chr11	459168	2	CDS	CDS:EXON_MRNA:INTRON	HBG2:ENSG00000239920:HBE1:OR51B5	ENSG00000196565.15:ENSG00000239920.2:ENSG00000213931.7:ENSG00000167355.8	ENST00000380252.6:ENST00000380259.7:ENST00000643199.1:ENST00000292896.3:ENST00000380237.5:ENST00000420726.6:ENST00000420465.6:ENST00000415970.6:ENST00000300773.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	60	2	2.32001	2.471185	2.62236	0.0136217	0.00517	0.101682	0.0631506
chr1	3884535	3884634	3595	0	+	0.434343	(0.408,0.44]	chr1	762	9	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	DFFB	ENSG00000169598.17	ENST00000338895.7:ENST00000491998.5:ENST00000468793.5:ENST00000339350.7:ENST00000477548.5:ENST00000378209.8:ENST00000378206.5:ENST00000475969.5:ENST00000461150.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	72	2	2.15938	2.4711350000000003	2.78289	0.011260300000000001	0.0022785	0.0884004	0.0437013
chr4	165332939	165333039	2079683	0	+	0.33	(0.32,0.35]	chr4	205561	2	SS3_PROX	SS3_PROX:INTRON	MSMO1	ENSG00000052802.13	ENST00000507013.5:ENST00000261507.11:ENST00000393766.6:ENST00000504317.1:ENST00000505270.1	protein_coding	protein_coding	protein_coding	protein_coding	7	117	2	2.19151	2.47106	2.75061	0.0114722	3.45163e-4	0.0888882	0.0165233
chr16	14147469	14147569	6301855	0	+	0.39	(0.378,0.408]	chr16	602652	28	INTRON	INTRON	MRTFB	ENSG00000186260.17	ENST00000571589.6:ENST00000574998.5:ENST00000574045.5:ENST00000575537.5:ENST00000318282.9:ENST00000573434.1:ENST00000575768.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	34	2	2.30961	2.4710400000000003	2.63247	0.055088	0.0215745	0.165463	0.123836
chr16	14762937	14763037	6303971	0	+	0.39	(0.378,0.408]	chr16	602885	1	SS3_PROX	SS3_PROX:INTRON	NPIPA2	ENSG00000254852.9	ENST00000529166.6:ENST00000530328.5:ENST00000553201.1	protein_coding	protein_coding	protein_coding	protein_coding	2	34	2	2.30961	2.4710400000000003	2.63247	0.055088	0.0215745	0.165463	0.123836
chr20	35404858	35404958	7335138	0	-	0.39	(0.378,0.408]	chr20	747197	103	INTRON	INTRON	UQCC1	ENSG00000101019.22	ENST00000374380.6:ENST00000374394.7:ENST00000374384.6:ENST00000359226.6:ENST00000349714.9:ENST00000457259.5:ENST00000374385.10:ENST00000453855.5:ENST00000424405.5:ENST00000443429.5:ENST00000438533.5:ENST00000397554.5:ENST00000491125.5:ENST00000491040.5:ENST00000397553.6:ENST00000495752.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	34	2	2.30961	2.4710400000000003	2.63247	0.055088	0.0215745	0.165463	0.123836
chr21	44013358	44013458	7415042	0	+	0.39	(0.378,0.408]	chr21	755783	4	INTRON	INTRON	TRAPPC10	ENSG00000160218.13	ENST00000291574.9:ENST00000380221.7:ENST00000422875.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	34	2	2.30961	2.4710400000000003	2.63247	0.055088	0.0215745	0.165463	0.123836
chr3	167692366	167692465	1853615	0	-	0.40404	(0.378,0.408]	chr3	186284	43	INTRON	INTRON	PDCD10	ENSG00000114209.15	ENST00000392750.7:ENST00000473645.6:ENST00000497056.6:ENST00000492396.5:ENST00000461494.5:ENST00000470131.5:ENST00000475915.6:ENST00000487947.6:ENST00000471885.5:ENST00000479121.5:ENST00000462725.6:ENST00000492139.5	protein_coding	protein_coding	protein_coding	protein_coding	2	34	2	2.30961	2.4710400000000003	2.63247	0.055088	0.0215745	0.165463	0.123836
chr12	108711365	108711465	5406584	0	-	0.5	(0.476,0.515]	chr12	516035	84	INTRON	INTRON	CORO1C	ENSG00000110880.11	ENST00000261401.8:ENST00000541050.5:ENST00000549384.5:ENST00000550542.5:ENST00000552871.5:ENST00000551550.5:ENST00000546571.5:ENST00000551044.1:ENST00000551059.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	59	2	2.21677	2.47092	2.72507	0.0207026	0.0029369	0.110999	0.0496505
chr2	8815625	8815724	1061812	0	-	0.494949	(0.476,0.515]	chr2	113271	19	INTRON	INTRON	KIDINS220	ENSG00000134313.17	ENST00000569008.2:ENST00000689369.1:ENST00000693394.1:ENST00000689852.1:ENST00000693432.1:ENST00000256707.8:ENST00000687912.1:ENST00000685097.1:ENST00000473731.5:ENST00000687894.1:ENST00000691030.1:ENST00000686906.1:ENST00000488729.5:ENST00000489024.5:ENST00000459813.2:ENST00000692419.1:ENST00000689531.1:ENST00000686179.1:ENST00000692889.1:ENST00000687240.1:ENST00000690607.1:ENST00000319688.5:ENST00000689114.1:ENST00000685274.1:ENST00000693366.1:ENST00000693249.1:ENST00000687526.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	59	2	2.21677	2.47092	2.72507	0.0207026	0.0029369	0.110999	0.0496505
chr5	149346999	149347096	2516842	0	+	0.494845	(0.476,0.515]	chr5	240585	8	INTRON	INTRON	GRPEL2	ENSG00000164284.15	ENST00000513661.5:ENST00000329271.8:ENST00000416916.2:ENST00000507562.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	44	2	1.92984	2.470905	3.01197	0.0466474	0.00633162	0.151522	0.0722266
chr9	37185112	37185212	4118306	0	+	0.46	(0.44,0.476]	chr9	375384	250	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000322831.6:ENST00000461038.5:ENST00000488607.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	71	2	2.30673	2.470905	2.63508	0.0055175	0.00501007	0.0672816	0.0618077
chr20	35738167	35738267	7336516	0	-	0.57	(0.515,0.57]	chr20	747495	12	INTRON	INTRON	RBM39	ENSG00000131051.24	ENST00000253363.11:ENST00000639702.1:ENST00000656873.1:ENST00000463004.5:ENST00000361162.10:ENST00000461283.5:ENST00000403542.6:ENST00000338163.10:ENST00000528062.7:ENST00000429968.5:ENST00000444878.5:ENST00000665058.1:ENST00000374038.7:ENST00000412738.5:ENST00000434927.5:ENST00000425184.5:ENST00000481037.5:ENST00000455343.5:ENST00000416108.5:ENST00000426951.5:ENST00000477334.1:ENST00000442447.5:ENST00000449489.5:ENST00000433027.5:ENST00000487604.1:ENST00000453310.5:ENST00000416529.5:ENST00000397370.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	71	2	2.45261	2.470815	2.48902	0.00760558	0.00116897	0.0749571	0.0315666
chr5	10715571	10715671	2567870	0	-	0.4	(0.378,0.408]	chr5	246124	316	INTRON	INTRON	DAP	ENSG00000112977.16	ENST00000230895.11:ENST00000432074.2:ENST00000514882.5:ENST00000508253.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	62	2	2.11194	2.4708050000000004	2.82967	0.0292534	0.00189968	0.128055	0.0402736
chr6	35612697	35612797	3086751	0	-	0.48	(0.476,0.515]	chr6	288763	149	INTRON	INTRON	FKBP5	ENSG00000096060.15	ENST00000536438.5:ENST00000539068.5:ENST00000357266.9:ENST00000542713.1	protein_coding	protein_coding	protein_coding	protein_coding	3	45	2	1.8388	2.47072	3.10264	0.0564473	0.00543163	0.184423	0.0645052
chr6	17660358	17660457	3065737	0	-	0.272727	[0,0.28]	chr6	284824	81	INTRON	INTRON	NUP153	ENSG00000124789.12	ENST00000613258.4:ENST00000537253.5:ENST00000262077.3	protein_coding	protein_coding	protein_coding	protein_coding	9	126	2	1.63447	2.47071	3.30695	0.0151649	0.00469836	0.108535	0.0600108
chr10	110873009	110873107	4521108	0	+	0.306122	(0.28,0.32]	chr10	417114	6	INTRON	INTRON	PDCD4	ENSG00000150593.18	ENST00000393104.6:ENST00000467574.5:ENST00000483670.5:ENST00000280154.12:ENST00000444997.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	92	2	2.29708	2.4706599999999996	2.64424	0.0195087	0.00159565	0.109483	0.0367961
chr7	155780101	155780200	3453277	0	+	0.444444	(0.44,0.476]	chr7	322755	51	UTR3	UTR3:EXON_MRNA	RBM33	ENSG00000184863.11	ENST00000401878.8:ENST00000341148.7	protein_coding	protein_coding	protein_coding	protein_coding	16	202	2	2.08948	2.47064	2.8518	6.1854e-4	1.14382e-4	0.0223951	0.00962769
chr12	93791855	93791955	5191047	0	+	0.38	(0.378,0.408]	chr12	490927	7	INTRON	INTRON	CRADD	ENSG00000169372.13	ENST00000332896.8:ENST00000549615.5:ENST00000551065.5:ENST00000548483.5:ENST00000542893.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	46	2	1.88729	2.4706099999999998	3.05393	0.0532327	0.00551532	0.162538	0.0672816
chr6	37382453	37382552	2856375	0	+	0.40404	(0.378,0.408]	chr6	270073	7	INTRON	INTRON	RNF8	ENSG00000112130.17	ENST00000373479.9:ENST00000229866.10:ENST00000469731.5:ENST00000498460.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	70	2	1.74732	2.4705	3.19368	0.0166132	0.00426861	0.110511	0.0573912
chr10	131944445	131944545	4537309	0	+	0.34	(0.32,0.35]	chr10	418895	3	SS5_PROX	SS5_PROX:INTRON	PPP2R2D	ENSG00000175470.20	ENST00000455566.6:ENST00000616467.4:ENST00000482010.6:ENST00000470416.5:ENST00000490777.3:ENST00000649083.1:ENST00000472664.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	51	2	2.25173	2.4704699999999997	2.68921	0.0230336	0.0180122	0.118056	0.114436
chr17	31965874	31965965	6595967	0	+	0.351648	(0.35,0.378]	chr17	641556	3	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	SUZ12	ENSG00000178691.11	ENST00000322652.10:ENST00000580398.1:ENST00000494429.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	58	2	2.15877	2.470445	2.78212	0.0168532	0.0102036	0.103549	0.089002
chr1	225780306	225780406	327267	0	+	0.44	(0.408,0.44]	chr1	37651	19	INTRON	INTRON	SRP9	ENSG00000143742.14	ENST00000626563.2:ENST00000619790.4:ENST00000304786.12:ENST00000650651.1:ENST00000366839.8:ENST00000651465.1:ENST00000651761.1:ENST00000651653.1:ENST00000366838.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	139	2	2.2781	2.470405	2.66271	0.00141839	4.42751e-4	0.0340865	0.0190383
chr17	63755378	63755468	6811790	0	-	0.522222	(0.515,0.57]	chr17	673156	5	INTRON	INTRON	CCDC47	ENSG00000108588.15	ENST00000225726.10:ENST00000403162.7:ENST00000582252.1:ENST00000582331.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	61	2	2.15866	2.47037	2.78208	0.0100547	0.00209264	0.0848452	0.0424943
chr17	78172095	78172190	6681929	0	+	0.547368	(0.515,0.57]	chr17	652680	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	SYNGR2	ENSG00000108639.8	ENST00000225777.8:ENST00000585591.5:ENST00000589711.1:ENST00000588282.5:ENST00000589168.1:ENST00000590201.1:ENST00000592456.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	61	2	2.15866	2.47037	2.78208	0.0100547	0.00209264	0.0848452	0.0424943
chrX	103679249	103679348	7856505	0	-	0.525253	(0.515,0.57]	chrX	801086	2	INTRON	INTRON	MORF4L2	ENSG00000123562.18	ENST00000360458.5:ENST00000441076.7:ENST00000433176.6:ENST00000451301.5:ENST00000434230.5:ENST00000418819.5:ENST00000442614.5:ENST00000492116.5:ENST00000422355.5:ENST00000474653.5:ENST00000498064.1:ENST00000467755.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	61	2	2.15866	2.47037	2.78208	0.0100547	0.00209264	0.0848452	0.0424943
chr10	73767336	73767419	4453984	0	+	0.385542	(0.378,0.408]	chr10	411127	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SEC24C	ENSG00000176986.16	ENST00000345254.9:ENST00000465076.5:ENST00000339365.2:ENST00000635550.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	55	2	2.09402	2.470325	2.84663	0.0133954	0.0126438	0.0982897	0.0946278
chr1	70208469	70208569	142457	0	+	0.47	(0.44,0.476]	chr1	15965	23	INTRON	INTRON	SRSF11	ENSG00000116754.14	ENST00000370951.5:ENST00000463877.1:ENST00000687381.1:ENST00000370950.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	11	154	2	2.45747	2.47027	2.48307	6.55527e-4	4.91692e-4	0.0232396	0.0205724
chr11	59798977	59799075	4795588	0	+	0.459184	(0.44,0.476]	chr11	444014	12	INTRON	INTRON	STX3	ENSG00000166900.17	ENST00000641815.1:ENST00000337979.9:ENST00000533637.5:ENST00000633708.1:ENST00000529177.5:ENST00000530221.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	44	2	2.33272	2.47023	2.60774	0.0255874	0.0129984	0.120269	0.0991656
chr2	46627598	46627697	770591	0	+	0.474747	(0.44,0.476]	chr2	86971	35	UTR3	UTR3:EXON_MRNA	CRIPT	ENSG00000119878.6	ENST00000238892.4	protein_coding	protein_coding	protein_coding	protein_coding	3	44	2	2.33272	2.47023	2.60774	0.0255874	0.0129984	0.120269	0.0991656
chr5	79614083	79614181	2398741	0	+	0.336735	(0.32,0.35]	chr5	231675	1	INTRON	INTRON	TENT2	ENSG00000164329.14	ENST00000505571.5:ENST00000423041.6:ENST00000504233.5:ENST00000453514.6:ENST00000428308.6:ENST00000515807.5:ENST00000296783.7:ENST00000514095.5:ENST00000508620.5:ENST00000503620.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	23	365	2	2.24001	2.47015	2.70029	5.84931e-4	1.9735e-5	0.0224206	0.0034232
chr15	63572361	63572459	6042600	0	+	0.357143	(0.35,0.378]	chr15	575443	14	INTRON	INTRON	USP3	ENSG00000140455.17	ENST00000540797.5:ENST00000380324.8:ENST00000558157.5:ENST00000561326.5:ENST00000559873.5:ENST00000559192.5:ENST00000268049.11:ENST00000558285.5:ENST00000559257.5:ENST00000538686.6:ENST00000559711.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	89	2	2.30859	2.47006	2.63153	0.00562761	0.00276702	0.0653997	0.0486894
chr12	67292776	67292858	5160735	0	+	0.439024	(0.408,0.44]	chr12	488476	1	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	CAND1	ENSG00000111530.13	ENST00000545606.6:ENST00000539434.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	68	2	1.78592	2.47003	3.15414	0.0142075	0.00469847	0.103638	0.0600108
chr8	41706933	41707029	3938140	0	-	0.489583	(0.476,0.515]	chr8	361037	3	INTRON	INTRON	ANK1	ENSG00000029534.21	ENST00000347528.8:ENST00000265709.13:ENST00000289734.13	protein_coding	protein_coding	protein_coding	protein_coding	6	81	2	2.03337	2.470025	2.90668	0.00851546	0.00164243	0.0833995	0.0369207
chr9	110249124	110249224	4313923	0	-	0.28	[0,0.28]	chr9	396564	39	INTRON	INTRON	TXN	ENSG00000136810.13	ENST00000374517.6:ENST00000374515.9	protein_coding	protein_coding	protein_coding	protein_coding	6	119	2	2.24136	2.4700249999999997	2.69869	0.00643225	0.00497825	0.0697113	0.0646039
chr1	171509855	171509954	253458	0	+	0.484848	(0.476,0.515]	chr1	30097	4	EXON_MRNA	EXON_MRNA:INTRON	PRRC2C	ENSG00000117523.18	ENST00000647382.2:ENST00000367742.7:ENST00000476522.5:ENST00000338920.8:ENST00000467601.1:ENST00000463586.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	87	2	2.01618	2.47002	2.92386	0.0180082	3.01132e-4	0.106756	0.0155054
chr1	168075516	168075598	249906	0	+	0.341463	(0.32,0.35]	chr1	29676	2	UTR3	UTR3:EXON_MRNA	DCAF6	ENSG00000143164.16	ENST00000432587.6:ENST00000367843.7:ENST00000367840.4:ENST00000312263.10:ENST00000489398.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	115	2	2.02647	2.47	2.91353	0.0116933	3.88987e-4	0.0892647	0.0177751
chr4	39455110	39455193	2129308	0	-	0.506024	(0.476,0.515]	chr4	209917	3	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	RPL9	ENSG00000163682.17	ENST00000645496.2:ENST00000295955.14:ENST00000503277.6:ENST00000508595.6:ENST00000449470.6:ENST00000511643.6:ENST00000506581.6:ENST00000644328.1:ENST00000503040.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	11	144	2	2.15719	2.4699999999999998	2.78281	0.0012506	6.29551e-4	0.0323608	0.0226349
chr1	235120684	235120779	661754	0	-	0.452632	(0.44,0.476]	chr1	78332	4	INTRON	INTRON	TOMM20	ENSG00000173726.11	ENST00000366607.5:ENST00000473132.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	44	2	2.0776	2.4699549999999997	2.86231	0.0292951	0.012214	0.141862	0.0910127
chr16	338555	338655	6426715	0	-	0.45	(0.44,0.476]	chr16	617500	235	INTRON	INTRON	AXIN1	ENSG00000103126.15	ENST00000262320.8:ENST00000461023.5:ENST00000354866.7:ENST00000481769.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	44	2	2.0776	2.4699549999999997	2.86231	0.0292951	0.012214	0.141862	0.0910127
chr1	227048707	227048806	648995	0	-	0.343434	(0.32,0.35]	chr1	76972	3	INTRON	INTRON	CDC42BPA	ENSG00000143776.20	ENST00000366766.8:ENST00000366769.7:ENST00000334218.9:ENST00000366767.7:ENST00000448940.5:ENST00000442054.5:ENST00000366764.8:ENST00000441725.1	protein_coding	protein_coding	protein_coding	protein_coding	7	115	2	2.15035	2.4699400000000002	2.78953	0.00745925	7.22336e-4	0.0748233	0.0245475
chr8	105508804	105508903	3839150	0	+	0.323232	(0.32,0.35]	chr8	354063	572	INTRON	INTRON	ZFPM2	ENSG00000169946.14	ENST00000407775.7:ENST00000520492.5:ENST00000520027.5:ENST00000524235.5:ENST00000511341.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	65	2	2.03198	2.46992	2.90786	0.0193728	0.00993008	0.108916	0.0877296
chr1	173867859	173867959	587092	0	-	0.52	(0.515,0.57]	chr1	70640	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	GAS5	ENSG00000234741.9	ENST00000687189.1:ENST00000689238.1:ENST00000687549.1:ENST00000687435.1:ENST00000687987.1:ENST00000686995.1:ENST00000689958.1:ENST00000687063.1:ENST00000689895.1:ENST00000690228.1:ENST00000688573.1:ENST00000412059.6:ENST00000685107.1:ENST00000449289.6:ENST00000691213.1:ENST00000436285.6:ENST00000436656.6:ENST00000422008.6:ENST00000691137.1:ENST00000450589.6:ENST00000448718.6:ENST00000693348.1:ENST00000690349.1:ENST00000690761.1:ENST00000687022.1:ENST00000686878.1:ENST00000430245.5:ENST00000422183.6:ENST00000442067.6:ENST00000693450.1:ENST00000690448.1:ENST00000416952.6:ENST00000688895.1:ENST00000687710.1:ENST00000693030.1:ENST00000692671.1:ENST00000688557.1:ENST00000456812.7:ENST00000431268.5:ENST00000455838.6:ENST00000449589.6:ENST00000444470.6:ENST00000693469.1:ENST00000685758.1:ENST00000458220.2:ENST00000687409.1:ENST00000688952.1:ENST00000689860.1:ENST00000686918.1:ENST00000691056.1:ENST00000689469.1:ENST00000685039.1:ENST00000414075.6:ENST00000692994.1:ENST00000691982.1:ENST00000690172.1:ENST00000686460.1:ENST00000691712.1:ENST00000685159.1:ENST00000685008.1:ENST00000452197.5:ENST00000650796.1:ENST00000693521.1:ENST00000690941.1:ENST00000693459.1:ENST00000686231.1:ENST00000684949.1:ENST00000425771.6:ENST00000456293.5:ENST00000443799.5:ENST00000421068.5	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	20	243	2	1.74127	2.4699	3.19853	0.0030104	1.13928e-6	0.0506889	6.72903e-4
chr6	119339468	119339568	3205713	0	-	0.43	(0.408,0.44]	chr6	298328	321	INTRON	INTRON	MAN1A1	ENSG00000111885.7	ENST00000368468.4	protein_coding	protein_coding	protein_coding	protein_coding	3	45	2	2.43988	2.469855	2.49983	0.0398236	0.00713527	0.143072	0.0756118
chr9	120441549	120441647	4332470	0	-	0.459184	(0.44,0.476]	chr9	398006	17	EXON_MRNA	EXON_MRNA:INTRON	CDK5RAP2	ENSG00000136861.19	ENST00000349780.9:ENST00000360190.8:ENST00000687279.1:ENST00000687633.1:ENST00000684780.1:ENST00000687311.1:ENST00000479584.2:ENST00000690814.1:ENST00000686842.1:ENST00000693714.1:ENST00000693386.1:ENST00000692746.1:ENST00000686376.1:ENST00000692155.1:ENST00000690646.1:ENST00000693433.1:ENST00000688923.1:ENST00000473282.6:ENST00000480112.5:ENST00000685866.1:ENST00000689688.1:ENST00000416449.6:ENST00000691504.1:ENST00000425647.1:ENST00000360822.8:ENST00000693728.1:ENST00000483412.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	99	2	2.1923	2.4698149999999996	2.74733	0.0043698	9.96884e-4	0.0604104	0.0288906
chr1	108781860	108781953	178607	0	+	0.430108	(0.408,0.44]	chr1	19425	1	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	STXBP3	ENSG00000116266.11	ENST00000370008.4:ENST00000495245.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	60	2	2.11447	2.4697899999999997	2.82511	0.0285207	0.00189528	0.12666	0.0402736
chr22	21976883	21976981	7561968	0	-	0.357143	(0.35,0.378]	chr22	773552	3	INTRON	INTRON	TOP3B	ENSG00000100038.20	ENST00000357179.10:ENST00000457179.5:ENST00000444502.5:ENST00000398793.6:ENST00000424393.5:ENST00000437929.5:ENST00000430142.5:ENST00000456075.5:ENST00000449704.5:ENST00000437103.1:ENST00000434517.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	122	2	2.24958	2.4697899999999997	2.69	0.00283659	0.00107271	0.0473151	0.0300133
chr9	130786953	130787053	4214594	0	+	0.38	(0.378,0.408]	chr9	386427	721	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000393293.4	protein_coding	protein_coding	protein_coding	protein_coding	16	221	2	2.07514	2.469695	2.86425	0.00138384	3.34442e-5	0.0338848	0.00463632
chr19	15298445	15298545	7147065	0	-	0.49	(0.476,0.515]	chr19	721965	181	INTRON	INTRON	BRD4	ENSG00000141867.19	ENST00000679869.1:ENST00000360016.9:ENST00000594841.5:ENST00000597315.5:ENST00000601941.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	73	2	1.40573	2.469675	3.53362	0.0410362	0.00102391	0.161534	0.029231300000000002
chr1	236799032	236799132	342531	0	+	0.31	(0.28,0.32]	chr1	39810	29	INTRON	INTRON	MTR	ENSG00000116984.15	ENST00000680454.1:ENST00000366577.10:ENST00000674797.2:ENST00000652435.1:ENST00000679569.1:ENST00000650888.1:ENST00000463959.1:ENST00000535889.6:ENST00000651455.1:ENST00000681102.1:ENST00000679842.1:ENST00000681177.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	91	2	2.40458	2.469665	2.53475	0.0141047	0.00257029	0.0959618	0.0466761
chr12	91436355	91436455	5383579	0	-	0.51	(0.476,0.515]	chr12	513479	366	INTRON	INTRON	ENSG00000289605	ENSG00000289605.1	ENST00000685093.1	lncRNA	lncRNA	lncRNA	lncRNA	6	90	2	2.11679	2.4696499999999997	2.82251	0.0115627	6.78359e-4	0.0962115	0.023827
chrX	138965722	138965822	7901220	0	-	0.5	(0.476,0.515]	chrX	804239	1007	INTRON	INTRON	FGF13	ENSG00000129682.16	ENST00000441825.8:ENST00000626909.2:ENST00000436198.5:ENST00000455663.5:ENST00000448673.1:ENST00000421460.1	protein_coding	protein_coding	protein_coding	protein_coding	3	44	2	1.86492	2.46957	3.07422	0.0550347	0.00506023	0.165463	0.0646039
chr7	156772671	156772771	3686802	0	-	0.47	(0.44,0.476]	chr7	342051	85	INTRON	INTRON	LMBR1	ENSG00000105983.23	ENST00000353442.10:ENST00000448926.5:ENST00000415428.5:ENST00000454132.5:ENST00000434503.5:ENST00000430278.5:ENST00000434278.5:ENST00000444719.5:ENST00000461469.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	54	2	1.62896	2.469535	3.31011	0.0546679	0.00259023	0.182674	0.0452934
chr5	39063814	39063914	2605542	0	-	0.3	(0.28,0.32]	chr5	247896	423	INTRON	INTRON	RICTOR	ENSG00000164327.13	ENST00000357387.8:ENST00000511516.5:ENST00000296782.9:ENST00000510711.5:ENST00000513566.1:ENST00000514735.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	94	2	1.70551	2.4695300000000002	3.23355	0.0159371	0.004869	0.109464	0.0607461
chr10	119041394	119041493	4704507	0	-	0.515152	(0.476,0.515]	chr10	433921	26	INTRON	INTRON	EIF3A	ENSG00000107581.13	ENST00000369144.8:ENST00000541549.2	protein_coding	protein_coding	protein_coding	protein_coding	3	44	2	1.99197	2.469445	2.94692	0.039572	0.00794331	0.143072	0.0797304
chr10	125080200	125080300	4713531	0	-	0.37	(0.35,0.378]	chr10	434897	407	INTRON	INTRON	CTBP2	ENSG00000175029.17	ENST00000337195.9:ENST00000411419.6:ENST00000494626.6:ENST00000531469.5:ENST00000460976.5:ENST00000476817.1:ENST00000530884.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	121	2	2.03655	2.46941	2.90227	0.00535994	5.81688e-4	0.0663076	0.0223753
chr6	87225334	87225433	2913963	0	+	0.323232	(0.32,0.35]	chr6	275311	15	INTRON	INTRON	ZNF292	ENSG00000188994.13	ENST00000369577.8:ENST00000518845.1:ENST00000339907.8:ENST00000496806.2	protein_coding	protein_coding	protein_coding	protein_coding	8	116	2	1.77469	2.469345	3.164	0.0115283	7.36249e-4	0.0960498	0.02495
chr3	52694275	52694349	1429283	0	+	0.27027	[0,0.28]	chr3	151027	1	UTR3	UTR3:EXON_MRNA	GNL3	ENSG00000163938.17	ENST00000394799.6:ENST00000418458.6:ENST00000496254.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	87	2	2.06132	2.46931	2.8773	0.0408268	0.00226728	0.1451	0.0437013
chr16	24191503	24191588	6327339	0	+	0.4	(0.378,0.408]	chr16	605798	2	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000466124.1	protein_coding	protein_coding	protein_coding	protein_coding	3	46	2	1.94681	2.469255	2.9917	0.0457723	0.0068789	0.149888	0.0749442
chr7	12357347	12357431	3484951	0	-	0.47619	(0.44,0.476]	chr7	325877	2	CDS	CDS:UTR3:EXON_MRNA	VWDE	ENSG00000146530.15	ENST00000275358.8:ENST00000452576.6:ENST00000521169.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	98	2	2.23425	2.4692299999999996	2.70421	0.00441123	9.23275e-4	0.0587529	0.0278392
chr16	29611505	29611605	6471716	0	-	0.44	(0.408,0.44]	chr16	625301	167	INTRON	INTRON	ENSG00000288632	ENSG00000288632.1	ENST00000675579.1	lncRNA	lncRNA	lncRNA	lncRNA	3	45	2	1.93243	2.46919	3.00595	0.0441194	0.00781452	0.162255	0.0759016
chr19	2781081	2781180	7116739	0	-	0.434343	(0.408,0.44]	chr19	715512	27	INTRON	INTRON	SGTA	ENSG00000104969.11	ENST00000221566.7:ENST00000678109.1:ENST00000676984.1:ENST00000677513.1:ENST00000676943.1:ENST00000677731.1:ENST00000679138.1:ENST00000677562.1:ENST00000678595.1:ENST00000677754.1:ENST00000677149.1:ENST00000678577.1:ENST00000589251.5:ENST00000586711.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	45	2	1.93243	2.46919	3.00595	0.0441194	0.00781452	0.162255	0.0759016
chrX	109695343	109695443	7861319	0	-	0.4	(0.378,0.408]	chrX	801449	33	INTRON	INTRON	ACSL4	ENSG00000068366.21	ENST00000469796.7:ENST00000672401.1:ENST00000348502.10:ENST00000340800.7:ENST00000684030.1:ENST00000682031.1:ENST00000671846.1:ENST00000672282.1:ENST00000502391.6:ENST00000684414.1:ENST00000673016.1:ENST00000508092.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	86	2	2.06872	2.4691349999999996	2.86955	0.00895678	0.00159247	0.0800073	0.0367961
chr17	32362313	32362413	6598107	0	+	0.39	(0.378,0.408]	chr17	641913	4	INTRON	INTRON	ZNF207	ENSG00000010244.19	ENST00000321233.10:ENST00000394673.6:ENST00000394670.9:ENST00000342555.10:ENST00000577908.5:ENST00000394679.9:ENST00000581531.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	17	236	2	2.3679	2.469125	2.57035	9.86016e-4	3.17403e-5	0.028711	0.00449886
chr3	184848570	184848670	1583141	0	+	0.46	(0.44,0.476]	chr3	163849	1	SS3_PROX	SS3_PROX:INTRON	VPS8	ENSG00000156931.16	ENST00000287546.8:ENST00000625842.3:ENST00000436792.6:ENST00000446204.6:ENST00000422105.5:ENST00000452666.3:ENST00000469479.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	59	2	2.33899	2.468935	2.59888	0.0142027	0.00487719	0.0959987	0.0640618
chr4	185203184	185203284	2306214	0	-	0.44	(0.408,0.44]	chr4	223170	116	INTRON	INTRON	CFAP97	ENSG00000164323.15	ENST00000458385.7:ENST00000514798.1:ENST00000647728.1:ENST00000503223.1	protein_coding	protein_coding	protein_coding	protein_coding	5	65	2	1.91269	2.46891	3.02513	0.0153219	0.0059965	0.100173	0.0700606
chr17	57287109	57287209	6633057	0	+	0.38	(0.378,0.408]	chr17	648013	7	INTRON	INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000581776.5:ENST00000674961.1:ENST00000582453.5:ENST00000675656.1:ENST00000322684.7:ENST00000579590.5:ENST00000676073.1:ENST00000675822.1:ENST00000442934.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	34	2	2.2259	2.468865	2.71183	0.0662381	0.0170789	0.181924	0.110899
chr19	10887587	10887687	7015128	0	+	0.39	(0.378,0.408]	chr19	697070	153	INTRON	INTRON	CARM1	ENSG00000142453.12	ENST00000327064.9:ENST00000588947.5:ENST00000590699.5:ENST00000344150.8:ENST00000586221.5:ENST00000590039.5:ENST00000589693.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	34	2	2.2259	2.468865	2.71183	0.0662381	0.0170789	0.181924	0.110899
chr2	32456042	32456141	731792	0	+	0.383838	(0.378,0.408]	chr2	84399	17	INTRON	INTRON	BIRC6	ENSG00000115760.15	ENST00000421745.7:ENST00000648282.1	protein_coding	protein_coding	protein_coding	protein_coding	2	34	2	2.2259	2.468865	2.71183	0.0662381	0.0170789	0.181924	0.110899
chr6	149789053	149789153	2996438	0	+	0.4	(0.378,0.408]	chr6	280374	155	INTRON	INTRON	PCMT1	ENSG00000120265.19	ENST00000367384.7:ENST00000367378.6:ENST00000484601.6:ENST00000367380.9:ENST00000544496.5:ENST00000649295.1:ENST00000494411.6:ENST00000464889.7:ENST00000486585.2:ENST00000495487.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	34	2	2.2259	2.468865	2.71183	0.0662381	0.0170789	0.181924	0.110899
chr6	161095610	161095707	3025553	0	+	0.402062	(0.378,0.408]	chr6	282401	14	INTRON	INTRON	MAP3K4	ENSG00000085511.20	ENST00000366919.6:ENST00000392142.9:ENST00000366920.6:ENST00000348824.11:ENST00000544041.5:ENST00000490904.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	34	2	2.2259	2.468865	2.71183	0.0662381	0.0170789	0.181924	0.110899
chr8	140629029	140629129	4076501	0	-	0.38	(0.378,0.408]	chr8	370289	18	INTRON	INTRON	AGO2	ENSG00000123908.12	ENST00000220592.10:ENST00000519980.5:ENST00000523609.5:ENST00000517293.5:ENST00000518019.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	34	2	2.2259	2.468865	2.71183	0.0662381	0.0170789	0.181924	0.110899
chr9	137300899	137300997	4376004	0	-	0.397959	(0.378,0.408]	chr9	403378	14	UTR3	UTR3:EXON_MRNA	NRARP	ENSG00000198435.4	ENST00000356628.4	protein_coding	protein_coding	protein_coding	protein_coding	2	34	2	2.2259	2.468865	2.71183	0.0662381	0.0170789	0.181924	0.110899
chr6	85630289	85630389	3151320	0	-	0.49	(0.476,0.515]	chr6	293889	58	INTRON	INTRON	ENSG00000271793:SYNCRIP	ENSG00000271793.2:ENSG00000135316.19	ENST00000682083.1:ENST00000683074.1:ENST00000681965.1:ENST00000682504.1:ENST00000682106.1:ENST00000683364.1:ENST00000683436.1:ENST00000684220.1:ENST00000683909.1:ENST00000684462.1:ENST00000616122.5:ENST00000678528.1:ENST00000676637.1:ENST00000677771.1:ENST00000355238.11:ENST00000678878.1:ENST00000677481.1:ENST00000677646.1:ENST00000676630.1:ENST00000678618.1:ENST00000676542.1:ENST00000677059.1:ENST00000444272.2:ENST00000678899.1:ENST00000369622.8:ENST00000678355.1:ENST00000676688.1:ENST00000677514.1:ENST00000678816.1:ENST00000678930.1:ENST00000678589.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	53	2	1.69138	2.46884	3.2463	0.0481165	0.00262374	0.153019	0.0470772
chr9	131488396	131488496	4217947	0	+	0.51	(0.476,0.515]	chr9	386869	3	SS5_PROX	SS5_PROX:INTRON	PRRC2B	ENSG00000288701.1	ENST00000684596.1:ENST00000683519.1:ENST00000682501.1:ENST00000682662.1:ENST00000683161.1	protein_coding	protein_coding	protein_coding	protein_coding	4	53	2	1.69138	2.46884	3.2463	0.0481165	0.00262374	0.153019	0.0470772
chr21	44050882	44050981	7415420	0	+	0.474747	(0.44,0.476]	chr21	755795	126	INTRON	INTRON	TRAPPC10	ENSG00000160218.13	ENST00000291574.9:ENST00000380221.7:ENST00000422875.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	71	2	2.46422	2.468805	2.47339	0.0090196	0.00282908	0.080367	0.0491595
chr11	12988966	12989063	4916071	0	-	0.381443	(0.378,0.408]	chr11	460687	1	SS5_PROX	SS5_PROX:INTRON	LINC00958	ENSG00000251381.8	ENST00000658243.1:ENST00000527945.2:ENST00000671253.1:ENST00000653758.1:ENST00000662291.1:ENST00000671577.1:ENST00000663902.1:ENST00000653958.1:ENST00000526388.2:ENST00000504230.2:ENST00000531402.6:ENST00000534477.6:ENST00000653981.1:ENST00000667588.1	lncRNA	lncRNA	lncRNA	lncRNA	4	56	2	1.65821	2.468715	3.27922	0.0506302	0.00312717	0.17547	0.0499153
chr12	132734575	132734666	5449294	0	-	0.351648	(0.35,0.378]	chr12	521910	1	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	ANKLE2	ENSG00000176915.15	ENST00000357997.10:ENST00000539605.5:ENST00000542374.5:ENST00000538766.1:ENST00000505031.6:ENST00000439231.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	80	2	2.02424	2.468705	2.91317	0.0164934	0.00189062	0.110301	0.0392053
chr2	131079691	131079790	1228954	0	-	0.363636	(0.35,0.378]	chr2	130987	74	INTRON	INTRON	FAM168B	ENSG00000152102.18	ENST00000389915.4:ENST00000409185.5	protein_coding	protein_coding	protein_coding	protein_coding	6	100	2	1.75081	2.46862	3.18643	0.0427459	7.78029e-5	0.148082	0.00735438
chr17	67184625	67184725	6825210	0	-	0.39	(0.378,0.408]	chr17	674490	45	INTRON	INTRON	HELZ	ENSG00000198265.12	ENST00000358691.10:ENST00000579953.5:ENST00000580168.5:ENST00000417253.7:ENST00000578783.1:ENST00000578938.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:nonsense_mediated_decay:processed_transcript	2	34	2	2.38873	2.46861	2.54849	0.0458857	0.0273196	0.149888	0.136494
chr2	121585484	121585584	1221749	0	-	0.38	(0.378,0.408]	chr2	130051	548	INTRON	INTRON	CLASP1	ENSG00000074054.20	ENST00000263710.8:ENST00000397587.7:ENST00000541377.5:ENST00000409078.8:ENST00000455322.6	protein_coding	protein_coding	protein_coding	protein_coding	2	34	2	2.38873	2.46861	2.54849	0.0458857	0.0273196	0.149888	0.136494
chr8	47895075	47895174	3945078	0	-	0.535354	(0.515,0.57]	chr8	361823	13	INTRON	INTRON	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7	protein_coding	protein_coding	protein_coding	protein_coding	8	95	2	2.32131	2.46856	2.61581	0.00139342	0.00127505	0.0340865	0.0331722
chr7	32498197	32498296	3303260	0	+	0.353535	(0.35,0.378]	chr7	306758	20	INTRON	INTRON	AVL9	ENSG00000105778.20	ENST00000485228.1:ENST00000318709.9:ENST00000459629.1:ENST00000409301.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	78	2	2.13524	2.468515	2.80179	0.0130865	0.00223906	0.0934394	0.0435144
chr9	96895339	96895439	4297798	0	-	0.34	(0.32,0.35]	chr9	395206	81	EXON_LNCRNA	EXON_LNCRNA	MFSD14C	ENSG00000196312.15	ENST00000647176.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	3	53	2	2.22429	2.46849	2.71269	0.0226421	0.0181461	0.117557	0.114853
chr1	110374192	110374291	182694	0	+	0.484848	(0.476,0.515]	chr1	20259	13	INTRON	INTRON	LAMTOR5-AS1	ENSG00000224699.10	ENST00000626572.2	lncRNA	lncRNA	lncRNA	lncRNA	3	44	2	1.99341	2.4684549999999996	2.9435	0.037389	0.00929849	0.155878	0.0817766
chr20	49698282	49698382	7353472	0	-	0.33	(0.32,0.35]	chr20	749846	412	INTRON	INTRON	B4GALT5	ENSG00000158470.5	ENST00000371711.4	protein_coding	protein_coding	protein_coding	protein_coding	3	51	2	2.30476	2.4684299999999997	2.6321	0.0268	0.0151817	0.123349	0.108535
chr10	3776979	3777077	4543114	0	-	0.428571	(0.408,0.44]	chr10	419496	11	UTR3	UTR3:EXON_MRNA:INTRON	KLF6	ENSG00000067082.15	ENST00000497571.6:ENST00000461124.1:ENST00000542957.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	80	2	1.20916	2.468385	3.72761	0.0631681	4.662e-4	0.197212	0.0199613
chr1	77969424	77969504	494434	0	-	0.3	(0.28,0.32]	chr1	58561	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	FUBP1	ENSG00000162613.17	ENST00000370768.7:ENST00000294623.8:ENST00000370767.5:ENST00000421641.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	77	2	1.96376	2.468375	2.97299	0.0480066	0.00126436	0.153019	0.0329641
chr5	95729183	95729282	2431214	0	+	0.454545	(0.44,0.476]	chr5	233627	111	INTRON	INTRON	RHOBTB3	ENSG00000164292.13	ENST00000510226.5:ENST00000515852.5:ENST00000504949.1	protein_coding	retained_intron	protein_coding	retained_intron:processed_transcript	5	73	2	1.71574	2.46836	3.22098	0.045256	2.82213e-4	0.149888	0.0149966
chr1	19230246	19230343	386997	0	-	0.525773	(0.515,0.57]	chr1	46175	3	INTRON	INTRON	EMC1	ENSG00000127463.16	ENST00000477853.6:ENST00000688219.1:ENST00000690732.1:ENST00000690451.1:ENST00000688667.1:ENST00000685099.1:ENST00000685594.1:ENST00000690823.1:ENST00000692207.1:ENST00000688332.1:ENST00000693007.1:ENST00000688918.1:ENST00000375199.7:ENST00000375208.7:ENST00000486405.2:ENST00000494770.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	38	2	2.03361	2.4683599999999997	2.90311	0.0325854	0.0094233	0.145164	0.0817766
chr11	68048548	68048625	4815739	0	+	0.545455	(0.515,0.57]	chr11	448701	2	SS3_PROX	SS3_PROX:INTRON	TCIRG1	ENSG00000110719.10	ENST00000265686.8:ENST00000532635.5:ENST00000525724.5:ENST00000528981.5:ENST00000533005.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	38	2	2.03361	2.4683599999999997	2.90311	0.0325854	0.0094233	0.145164	0.0817766
chr17	32147016	32147116	6596864	0	+	0.52	(0.515,0.57]	chr17	641728	39	INTRON	INTRON	RHOT1	ENSG00000126858.19	ENST00000333942.10:ENST00000358365.7:ENST00000583994.5:ENST00000545287.7:ENST00000354266.7:ENST00000581031.5:ENST00000581094.5:ENST00000578205.5:ENST00000580976.1:ENST00000394692.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	38	2	2.03361	2.4683599999999997	2.90311	0.0325854	0.0094233	0.145164	0.0817766
chr5	70227394	70227494	2638060	0	-	0.56	(0.515,0.57]	chr5	250619	12	INTRON	INTRON	GUSBP14	ENSG00000253816.3	ENST00000514522.2	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	3	38	2	2.03361	2.4683599999999997	2.90311	0.0325854	0.0094233	0.145164	0.0817766
chr19	36227550	36227650	7057549	0	+	0.39	(0.378,0.408]	chr19	704664	90	INTRON	INTRON	ZNF146	ENSG00000167635.12	ENST00000456324.5:ENST00000591063.5:ENST00000443387.3:ENST00000586094.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	63	2	1.6165	2.46833	3.32016	0.0374185	0.00268328	0.155878	0.0464781
chr12	45765492	45765592	5123074	0	+	0.33	(0.32,0.35]	chr12	483303	96	INTRON	INTRON	ARID2	ENSG00000189079.17	ENST00000334344.11:ENST00000426776.5:ENST00000422737.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	51	2	2.13945	2.46826	2.79707	0.0254517	0.0170923	0.133676	0.104099
chr21	46322738	46322832	7471680	0	-	0.5	(0.476,0.515]	chr21	761766	1	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	C21orf58	ENSG00000160298.18	ENST00000397682.7:ENST00000291691.12:ENST00000397680.5:ENST00000445935.5:ENST00000475776.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	13	165	2	1.91605	2.468165	3.02028	0.00319277	5.74415e-5	0.0506039	0.00619941
chr6	17662470	17662570	3065760	0	-	0.38	(0.378,0.408]	chr6	284833	4	SS3_PROX	SS3_PROX:INTRON	NUP153	ENSG00000124789.12	ENST00000613258.4:ENST00000537253.5:ENST00000262077.3	protein_coding	protein_coding	protein_coding	protein_coding	4	56	2	1.82258	2.46809	3.1136	0.0341279	0.00443339	0.135102	0.061054
chr5	64745019	64745119	2630213	0	-	0.52	(0.515,0.57]	chr5	249948	30	INTRON	INTRON	SREK1IP1	ENSG00000153006.16	ENST00000513458.9:ENST00000495198.6:ENST00000510616.5:ENST00000506252.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	70	2	2.34988	2.4680600000000004	2.58624	0.00526399	0.00194926	0.0633874	0.0410995
chr12	26965691	26965787	5097676	0	+	0.416667	(0.408,0.44]	chr12	481635	11	UTR3	UTR3:EXON_MRNA	FGFR1OP2	ENSG00000111790.14	ENST00000229395.8:ENST00000327214.5	protein_coding	protein_coding	protein_coding	protein_coding	4	53	2	1.9831	2.46803	2.95296	0.018491	0.00929354	0.116694	0.0817766
chr3	185918225	185918264	1886393	0	-	0.358974	(0.35,0.378]	chr3	188600	1	SS5_PROX	SS5_PROX:INTRON	TRA2B	ENSG00000136527.19	ENST00000453386.7:ENST00000492417.5:ENST00000463328.5:ENST00000259043.11:ENST00000414862.5:ENST00000487615.5:ENST00000466832.5:ENST00000456380.5:ENST00000382191.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	36	2	2.39746	2.46801	2.53856	0.041314	0.0326077	0.161534	0.133687
chr21	34115907	34116006	7401519	0	+	0.282828	(0.28,0.32]	chr21	753975	98	INTRON	INTRON	MRPS6	ENSG00000243927.6	ENST00000488492.5:ENST00000477091.5:ENST00000399312.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	78	2	2.06207	2.467945	2.87382	0.014868	0.00876132	0.0989021	0.0846118
chr7	127361575	127361674	3633929	0	-	0.292929	(0.28,0.32]	chr7	337748	19	EXON_MRNA	EXON_MRNA:INTRON	ZNF800:ENSG00000280347	ENSG00000048405.11:ENSG00000280347.1	ENST00000485577.1:ENST00000624029.1	protein_coding	TEC	protein_coding:TEC	TEC:processed_transcript	4	77	2	2.33771	2.46794	2.59817	0.0142701	0.00753816	0.103838	0.0748659
chr3	196073040	196073137	1897462	0	-	0.381443	(0.378,0.408]	chr3	189968	5	INTRON	INTRON	TFRC	ENSG00000072274.13	ENST00000420415.5:ENST00000360110.9:ENST00000392396.7:ENST00000421258.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	125	2	1.76615	2.467855	3.16956	0.0052385	5.70211e-4	0.0656295	0.0220524
chr3	150565526	150565626	1534221	0	+	0.42	(0.408,0.44]	chr3	159877	3	SS5_PROX	SS5_PROX:INTRON	EIF2A	ENSG00000144895.12	ENST00000487799.5:ENST00000494558.5:ENST00000460851.6:ENST00000406576.7:ENST00000482093.5:ENST00000273435.9:ENST00000462221.5:ENST00000477551.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	127	2	1.47987	2.4678199999999997	3.45577	0.0153183	1.29081e-4	0.108569	0.0103343
chr17	47188245	47188345	6789385	0	-	0.47	(0.44,0.476]	chr17	669640	1	SS5_PROX	SS5_PROX:INTRON	CDC27	ENSG00000004897.12	ENST00000066544.8:ENST00000531206.5:ENST00000533415.5:ENST00000527547.5:ENST00000526866.5:ENST00000525495.6:ENST00000575483.5:ENST00000532893.5:ENST00000528748.5:ENST00000532575.1:ENST00000528147.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	76	2	2.02558	2.467745	2.90991	0.0363567	3.20441e-4	0.138959	0.0159645
chr7	65910018	65910118	3323245	0	+	0.32	(0.28,0.32]	chr7	309012	361	INTRON	INTRON	VKORC1L1	ENSG00000196715.7	ENST00000360768.5:ENST00000648187.1:ENST00000648179.1:ENST00000434382.2	protein_coding	protein_coding	protein_coding	protein_coding	2	41	2	2.2609	2.467715	2.67453	0.0671429	0.021289	0.183051	0.123318
chr15	50608694	50608791	6172484	0	-	0.298969	(0.28,0.32]	chr15	588294	10	INTRON	INTRON	TRPM7	ENSG00000092439.16	ENST00000646667.1:ENST00000560955.5:ENST00000560638.1	protein_coding	protein_coding	protein_coding	protein_coding	4	67	2	2.1076	2.467645	2.82769	0.0169391	0.0133585	0.103888	0.100772
chr16	53477266	53477365	6353984	0	+	0.282828	(0.28,0.32]	chr16	610029	60	INTRON	INTRON	RBL2	ENSG00000103479.17	ENST00000680543.1:ENST00000262133.11:ENST00000379935.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	41	2	2.32871	2.467635	2.60656	0.0581621	0.0256827	0.167723	0.133676
chr2	39103342	39103442	1102161	0	-	0.31	(0.28,0.32]	chr2	118304	50	INTRON	INTRON	SOS1	ENSG00000115904.15	ENST00000692089.1:ENST00000402219.8:ENST00000690876.1:ENST00000395038.6:ENST00000691229.1:ENST00000689668.1:ENST00000690679.1:ENST00000461545.2:ENST00000451331.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	41	2	2.32871	2.467635	2.60656	0.0581621	0.0256827	0.167723	0.133676
chr7	44800340	44800423	3315637	0	+	0.457831	(0.44,0.476]	chr7	308132	5	EXON_MRNA	EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PPIA	ENSG00000196262.15	ENST00000479021.1:ENST00000468812.6:ENST00000676977.1:ENST00000677107.1:ENST00000355968.10:ENST00000489459.5:ENST00000415933.5:ENST00000620047.5:ENST00000678643.1:ENST00000677521.1:ENST00000678789.1:ENST00000678165.1:ENST00000677022.1:ENST00000678805.1:ENST00000494484.1:ENST00000480603.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	124	2	2.15426	2.467615	2.78097	0.00372059	2.31078e-4	0.0535094	0.0134209
chr1	11021535	11021623	24652	0	+	0.488636	(0.476,0.515]	chr1	2599	6	INTRON	INTRON	TARDBP	ENSG00000120948.19	ENST00000639083.1:ENST00000639599.1:ENST00000629725.2:ENST00000439080.6:ENST00000240185.8:ENST00000472476.5:ENST00000614757.4:ENST00000621715.4:ENST00000473869.5:ENST00000315091.7:ENST00000616545.4:ENST00000621790.4:ENST00000649624.1:ENST00000622057.4:ENST00000617172.4:ENST00000611963.4:ENST00000619555.4:ENST00000620632.4:ENST00000610369.4:ENST00000614494.1:ENST00000611136.4:ENST00000477447.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	60	2	1.78315	2.4675849999999997	3.15202	0.0215899	0.00455841	0.123836	0.0595107
chr16	2503644	2503744	6278594	0	+	0.48	(0.476,0.515]	chr16	600536	28	UTR3	UTR3:EXON_MRNA	TBC1D24	ENSG00000162065.14	ENST00000567020.6:ENST00000646147.1:ENST00000564879.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	60	2	1.78315	2.4675849999999997	3.15202	0.0215899	0.00455841	0.123836	0.0595107
chr2	61527117	61527214	1131117	0	-	0.329897	(0.32,0.35]	chr2	121631	2	INTRON	INTRON	XPO1	ENSG00000082898.19	ENST00000676553.1:ENST00000677556.1:ENST00000677814.1:ENST00000676771.1:ENST00000677803.1:ENST00000677239.1:ENST00000678790.1:ENST00000677928.1:ENST00000678182.1:ENST00000677150.1:ENST00000678172.1:ENST00000678360.1:ENST00000678081.1:ENST00000676889.1:ENST00000676783.1:ENST00000679035.1:ENST00000677422.1:ENST00000677417.1:ENST00000677813.1:ENST00000676999.1:ENST00000676667.1:ENST00000678263.1:ENST00000678877.1:ENST00000677933.1:ENST00000680228.1:ENST00000401558.7:ENST00000428210.5:ENST00000677290.1:ENST00000677850.1:ENST00000451765.6:ENST00000676789.1:ENST00000678741.1:ENST00000404992.6:ENST00000406957.5:ENST00000443240.5:ENST00000420673.6:ENST00000481214.1:ENST00000495003.1:ENST00000449444.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	14	163	2	1.62297	2.46752	3.31207	0.00711353	3.78985e-4	0.0756118	0.0180834
chr17	37640934	37641031	6764385	0	-	0.412371	(0.408,0.44]	chr17	665235	10	INTRON	INTRON	DDX52	ENSG00000278053.5	ENST00000617633.5:ENST00000620209.4:ENST00000614307.4:ENST00000612255.4:ENST00000613633.1:ENST00000619418.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	45	2	2.11447	2.4674449999999997	2.82042	0.0285207	0.0120121	0.12666	0.0962115
chr19	45729057	45729156	7193170	0	-	0.424242	(0.408,0.44]	chr19	728468	57	INTRON	INTRON	FBXO46	ENSG00000177051.6	ENST00000317683.4	protein_coding	protein_coding	protein_coding	protein_coding	3	45	2	2.11447	2.4674449999999997	2.82042	0.0285207	0.0120121	0.12666	0.0962115
chr16	80991453	80991553	6530538	0	-	0.46	(0.44,0.476]	chr16	632651	3	SS5_PROX	SS5_PROX:INTRON	CMC2	ENSG00000103121.9	ENST00000219400.8:ENST00000563779.5:ENST00000486645.5:ENST00000570195.5:ENST00000566047.5:ENST00000561614.5:ENST00000566231.5:ENST00000569187.5:ENST00000570086.5:ENST00000564249.5:ENST00000565650.5:ENST00000567593.5:ENST00000568228.5:ENST00000565914.5:ENST00000565108.5:ENST00000565925.5:ENST00000564174.5:ENST00000565613.5:ENST00000569666.5:ENST00000562713.3:ENST00000562828.5:ENST00000630396.1:ENST00000565514.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	59	2	2.24189	2.4674300000000002	2.69297	0.0193405	0.00333494	0.108861	0.0528877
chr1	235281240	235281339	663393	0	-	0.515152	(0.476,0.515]	chr1	78552	201	INTRON	INTRON	ARID4B	ENSG00000054267.22	ENST00000349213.7:ENST00000366603.6:ENST00000264183.9:ENST00000421364.5:ENST00000491632.5:ENST00000418304.1:ENST00000466653.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	55	2	2.37448	2.4674050000000003	2.56033	0.0287634	0.00419067	0.127066	0.0591344
chr2	69353460	69353559	1146959	0	-	0.50505	(0.476,0.515]	chr2	122477	29	INTRON	INTRON	GFPT1	ENSG00000198380.13	ENST00000361060.5:ENST00000357308.9:ENST00000674507.1:ENST00000674438.1	protein_coding	protein_coding	protein_coding	protein_coding	4	55	2	2.37448	2.4674050000000003	2.56033	0.0287634	0.00419067	0.127066	0.0591344
chr16	85562657	85562757	6415458	0	+	0.65	(0.57,1]	chr16	615470	59	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	8	57	2	2.28571	2.46737	2.64903	0.00125922	9.85026e-4	0.0323898	0.0288488
chr15	22581013	22581112	5975419	0	+	0.484848	(0.476,0.515]	chr15	568243	9	INTRON	INTRON	HERC2P2	ENSG00000276550.5	ENST00000619021.4:ENST00000690192.1:ENST00000614571.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	5	71	2	2.16306	2.4672850000000004	2.77151	0.00973468	0.00288481	0.0877284	0.0475859
chr6	157987376	157987475	3017066	0	+	0.454545	(0.44,0.476]	chr6	281468	49	INTRON	INTRON	SYNJ2	ENSG00000078269.15	ENST00000355585.9:ENST00000640338.1:ENST00000367113.5	protein_coding	protein_coding	protein_coding	protein_coding	3	45	2	2.19078	2.46725	2.74372	0.0226089	0.0153007	0.117489	0.108569
chr19	15295946	15296046	7147040	0	-	0.44	(0.408,0.44]	chr19	721965	156	INTRON	INTRON	BRD4	ENSG00000141867.19	ENST00000679869.1:ENST00000360016.9:ENST00000594841.5:ENST00000597315.5:ENST00000601941.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	99	2	1.98319	2.467035	2.95088	0.0042785	0.00142252	0.0598356	0.0340865
chr2	61515669	61515767	1130993	0	-	0.397959	(0.378,0.408]	chr2	121606	8	INTRON	INTRON	XPO1	ENSG00000082898.19	ENST00000676553.1:ENST00000677556.1:ENST00000677814.1:ENST00000676771.1:ENST00000677803.1:ENST00000677239.1:ENST00000678790.1:ENST00000677928.1:ENST00000678182.1:ENST00000677150.1:ENST00000678172.1:ENST00000678360.1:ENST00000678081.1:ENST00000676889.1:ENST00000676783.1:ENST00000679035.1:ENST00000677422.1:ENST00000677417.1:ENST00000677813.1:ENST00000676999.1:ENST00000676667.1:ENST00000678263.1:ENST00000678877.1:ENST00000677933.1:ENST00000680228.1:ENST00000677289.1:ENST00000677190.1:ENST00000401558.7:ENST00000428210.5:ENST00000677290.1:ENST00000677850.1:ENST00000451765.6:ENST00000676789.1:ENST00000678741.1:ENST00000404992.6:ENST00000406957.5:ENST00000443240.5:ENST00000476585.5:ENST00000468259.1:ENST00000420673.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	76	2	1.46085	2.467035	3.47322	0.0343503	0.00147803	0.147468	0.0348908
chr10	37848202	37848301	4602505	0	-	0.454545	(0.44,0.476]	chr10	423985	97	INTRON	INTRON	ZNF248	ENSG00000198105.16	ENST00000615949.6:ENST00000485560.5:ENST00000395867.8:ENST00000357328.8:ENST00000611278.4:ENST00000374648.7:ENST00000395873.7:ENST00000395874.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	110	2	2.02421	2.4670050000000003	2.9098	0.00536295	4.57573e-4	0.0663076	0.0197167
chr3	32742465	32742565	1393701	0	+	0.53	(0.515,0.57]	chr3	145926	46	INTRON	INTRON	CNOT10	ENSG00000182973.20	ENST00000331889.10:ENST00000328834.10:ENST00000435630.5:ENST00000454516.7:ENST00000416457.5:ENST00000430408.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	93	2	2.08662	2.46699	2.84736	0.00375149	4.72534e-4	0.0562562	0.0201458
chr2	113751767	113751867	1216778	0	-	0.46	(0.44,0.476]	chr2	129536	8	INTRON	INTRON	SLC35F5	ENSG00000115084.15	ENST00000245680.7:ENST00000409106.5:ENST00000409342.1:ENST00000498768.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	61	2	1.42812	2.46698	3.50584	0.0673866	8.66138e-4	0.183355	0.0266729
chr21	29066515	29066615	7436980	0	-	0.3	(0.28,0.32]	chr21	758527	4	SS5_PROX	SS5_PROX:INTRON	CCT8	ENSG00000156261.13	ENST00000540844.5:ENST00000470450.5:ENST00000286788.9:ENST00000626972.2:ENST00000431234.1:ENST00000484403.5:ENST00000481059.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	76	2	2.05458	2.4669600000000003	2.87934	0.0381508	0.00189034	0.141764	0.0402736
chr12	43726780	43726879	5313857	0	-	0.393939	(0.378,0.408]	chr12	505399	79	UTR3	UTR3:EXON_MRNA	PUS7L	ENSG00000129317.15	ENST00000344862.10	protein_coding	protein_coding	protein_coding	protein_coding	6	76	2	1.82032	2.46696	3.1136	0.01477	0.00443339	0.0984422	0.061054
chr3	138822516	138822616	1831378	0	-	0.46	(0.44,0.476]	chr3	184062	256	INTRON	INTRON	PIK3CB	ENSG00000051382.9	ENST00000674063.1:ENST00000477593.5:ENST00000462898.5:ENST00000483968.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	13	152	2	1.50133	2.466955	3.43258	0.0165581	1.45646e-5	0.102621	0.00285856
chr19	46783796	46783896	7195374	0	-	0.61	(0.57,1]	chr19	728993	3	SS5_PROX	SS5_PROX:INTRON	SLC1A5	ENSG00000105281.12	ENST00000542575.6:ENST00000594991.5:ENST00000434726.6:ENST00000412532.6:ENST00000593713.1:ENST00000598022.1	protein_coding	protein_coding	protein_coding	protein_coding	3	24	2	1.9042	2.466935	3.02967	0.0476976	0.00471306	0.153019	0.0631419
chr20	47536803	47536903	7281346	0	+	0.44	(0.408,0.44]	chr20	740469	344	INTRON	INTRON	NCOA3	ENSG00000124151.19	ENST00000371998.8:ENST00000372004.7:ENST00000371997.3	protein_coding	protein_coding	protein_coding	protein_coding	7	74	2	1.64527	2.466895	3.28852	0.0175998	0.00287185	0.11319	0.0474836
chr1	37877887	37877987	425473	0	-	0.36	(0.35,0.378]	chr1	51569	3	SS5_PROX	SS5_PROX:INTRON	INPP5B	ENSG00000204084.13	ENST00000373023.6:ENST00000373024.8:ENST00000458109.6:ENST00000373027.5:ENST00000373026.5	protein_coding	protein_coding	protein_coding	protein_coding	4	60	2	2.39519	2.466875	2.53856	0.0326077	0.00401951	0.133687	0.0578189
chr9	131184469	131184566	4216234	0	+	0.484536	(0.476,0.515]	chr9	386631	2	EXON_MRNA	EXON_MRNA:INTRON	NUP214	ENSG00000126883.19	ENST00000695497.1:ENST00000695498.1:ENST00000695496.1:ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000525980.5:ENST00000526346.5:ENST00000531929.5:ENST00000651334.1:ENST00000524578.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	61	2	2.19809	2.4668650000000003	2.73564	0.020317	0.00333144	0.121522	0.0512081
chr10	18524952	18525052	4569433	0	-	0.44	(0.408,0.44]	chr10	421439	109	INTRON	INTRON	ENSG00000240291	ENSG00000240291.1	ENST00000425669.1	lncRNA	lncRNA	lncRNA	lncRNA	3	46	2	2.26792	2.466855	2.66579	0.019342	0.0179973	0.119831	0.106756
chr17	57260354	57260454	6632781	0	+	0.42	(0.408,0.44]	chr17	647987	3	SS5_PROX	SS5_PROX:INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000581776.5:ENST00000581523.5:ENST00000674961.1:ENST00000582453.5:ENST00000675656.1:ENST00000322684.7:ENST00000579590.5:ENST00000579531.5:ENST00000676073.1:ENST00000676105.1:ENST00000584476.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	46	2	2.26792	2.466855	2.66579	0.019342	0.0179973	0.119831	0.106756
chr11	114442192	114442289	4868991	0	+	0.350515	(0.35,0.378]	chr11	454399	4	INTRON	INTRON	ENSG00000255663:REXO2	ENSG00000255663.1:ENSG00000076043.11	ENST00000544347.1:ENST00000544010.5:ENST00000265881.10:ENST00000539754.5:ENST00000539275.5:ENST00000539333.5:ENST00000541703.5:ENST00000543131.5:ENST00000538198.5:ENST00000539119.5:ENST00000542186.1:ENST00000544827.5:ENST00000546316.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	48	2	2.04358	2.466805	2.89003	0.0329533	0.0122391	0.145171	0.0910127
chrX	3901050	3901144	7747604	0	-	0.37234	(0.35,0.378]	chrX	793144	13	INTRON	INTRON	ENSG00000285756	ENSG00000285756.2	ENST00000648217.1:ENST00000650456.1:ENST00000650538.1:ENST00000424415.2:ENST00000451781.1	lncRNA	lncRNA	lncRNA	lncRNA	3	48	2	2.04358	2.466805	2.89003	0.0329533	0.0122391	0.145171	0.0910127
chr10	75227855	75227954	4464515	0	+	0.494949	(0.476,0.515]	chr10	411844	51	INTRON	INTRON	VDAC2	ENSG00000165637.14	ENST00000543351.5:ENST00000298468.9:ENST00000332211.11:ENST00000313132.8	protein_coding	protein_coding	protein_coding	protein_coding	7	97	2	2.44441	2.46679	2.48917	0.0036718	0.00110233	0.0535094	0.03038
chr16	16546801	16546901	6311330	0	+	0.31	(0.28,0.32]	chr16	604098	468	INTRON	INTRON	ENSG00000260126	ENSG00000260126.2	ENST00000567465.2	lncRNA	lncRNA	lncRNA	lncRNA	6	107	2	2.15434	2.466755	2.77917	0.00818138	0.00285651	0.0768236	0.0494641
chr20	47247213	47247311	7348404	0	-	0.591837	(0.57,1]	chr20	749276	3	INTRON	INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000467200.6:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000468376.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	24	2	2.13445	2.46667	2.79889	0.0241482	0.0110274	0.12011	0.0927187
chr7	5421689	5421789	3472063	0	-	0.77	(0.57,1]	chr7	324685	2	SS3_PROX	SS3_PROX:INTRON	TNRC18	ENSG00000182095.15	ENST00000399537.8:ENST00000430969.6:ENST00000399434.2	protein_coding	protein_coding	protein_coding	protein_coding	3	24	2	2.13445	2.46667	2.79889	0.0241482	0.0110274	0.12011	0.0927187
chr9	37133538	37133638	4117788	0	+	0.24	[0,0.28]	chr9	375372	62	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000322831.6:ENST00000461038.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	14	272	2	1.86071	2.4666449999999998	3.07258	0.00816108	4.9893e-5	0.0766625	0.00578948
chr10	45524810	45524910	4606462	0	-	0.43	(0.408,0.44]	chr10	424345	350	INTRON	INTRON	MARCHF8	ENSG00000165406.16	ENST00000453424.7:ENST00000319836.7:ENST00000395769.6:ENST00000602712.2:ENST00000453980.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	33	2	2.18807	2.466625	2.74518	0.0708044	0.0152229	0.184528	0.108535
chr11	108366905	108367005	4858606	0	+	0.43	(0.408,0.44]	chr11	453406	15	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ATM	ENSG00000149311.20	ENST00000675843.1:ENST00000683174.1:ENST00000452508.6:ENST00000278616.9:ENST00000683524.1:ENST00000684152.1:ENST00000682286.1:ENST00000682302.1:ENST00000684447.1:ENST00000638786.2:ENST00000684180.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	33	2	2.18807	2.466625	2.74518	0.0708044	0.0152229	0.184528	0.108535
chr4	2918831	2918930	1915799	0	+	0.424242	(0.408,0.44]	chr4	192341	34	INTRON	INTRON	ADD1	ENSG00000087274.19	ENST00000683351.1:ENST00000398125.5:ENST00000264758.11:ENST00000513328.6:ENST00000503455.6:ENST00000355842.7:ENST00000651918.1:ENST00000398129.5:ENST00000398123.6:ENST00000514940.5:ENST00000541051.5:ENST00000513762.2:ENST00000536424.2:ENST00000539149.1:ENST00000541843.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	33	2	2.18807	2.466625	2.74518	0.0708044	0.0152229	0.184528	0.108535
chr7	157226729	157226828	3454839	0	+	0.484848	(0.476,0.515]	chr7	322996	8	INTRON	INTRON	UBE3C	ENSG00000009335.18	ENST00000348165.10:ENST00000470408.5:ENST00000497368.1:ENST00000494532.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	90	2	1.75694	2.46661	3.17628	0.0175942	3.6008e-4	0.105143	0.0169207
chr5	127523845	127523932	2479857	0	+	0.413793	(0.408,0.44]	chr5	236780	4	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	PRRC1	ENSG00000164244.21	ENST00000296666.13:ENST00000512871.1:ENST00000442138.6:ENST00000512635.2:ENST00000507774.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	12	172	2	2.1269	2.466565	2.80623	0.00691204	1.61943e-5	0.0718189	0.00304339
chr18	31922567	31922667	6961192	0	-	0.36	(0.35,0.378]	chr18	688780	45	INTRON	INTRON	TRAPPC8	ENSG00000153339.15	ENST00000283351.10:ENST00000580104.5:ENST00000582539.5:ENST00000582513.5:ENST00000578658.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	62	2	2.39939	2.466545	2.5337	0.0458078	0.0022093	0.149888	0.0435144
chr17	82897972	82898071	6695694	0	+	0.525253	(0.515,0.57]	chr17	654985	16	INTRON	INTRON	TBCD	ENSG00000141556.22	ENST00000682479.1:ENST00000682722.1:ENST00000684464.1:ENST00000684544.1:ENST00000681983.1:ENST00000684361.1:ENST00000683184.1:ENST00000683282.1:ENST00000684408.1:ENST00000355528.9:ENST00000683444.1:ENST00000684776.1:ENST00000683041.1:ENST00000684760.1:ENST00000684349.1:ENST00000682213.1:ENST00000683009.1:ENST00000682921.1:ENST00000539345.6:ENST00000684000.1:ENST00000684188.1:ENST00000684429.1:ENST00000682610.1:ENST00000683821.1:ENST00000682654.1:ENST00000576160.6:ENST00000571712.5:ENST00000576996.5:ENST00000574801.5:ENST00000683584.1:ENST00000682099.1:ENST00000684559.1:ENST00000571316.5:ENST00000576760.5:ENST00000572984.5:ENST00000683839.1:ENST00000574975.5:ENST00000572953.5:ENST00000571796.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	46	2	1.67758	2.466525	3.25547	0.0471728	0.00261721	0.168737	0.0455413
chr1	93886494	93886594	512470	0	-	0.27	[0,0.28]	chr1	60206	14	UTR3	UTR3:EXON_MRNA	GCLM	ENSG00000023909.10	ENST00000370238.8	protein_coding	protein_coding	protein_coding	protein_coding	4	76	2	1.95669	2.466425	2.97616	0.0237518	0.0128425	0.129075	0.0926667
chr1	35496911	35497011	421273	0	-	0.34	(0.32,0.35]	chr1	50810	173	INTRON	INTRON	KIAA0319L	ENSG00000142687.18	ENST00000325722.8:ENST00000426982.6:ENST00000440579.5:ENST00000431916.5:ENST00000482929.6:ENST00000478463.6:ENST00000470388.5:ENST00000492888.1:ENST00000469892.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	38	2	2.4458	2.466365	2.48693	0.0425977	0.0338094	0.148082	0.146709
chr10	74076080	74076178	4455290	0	+	0.336735	(0.32,0.35]	chr10	411422	13	EXON_LNCRNA	EXON_LNCRNA:INTRON	VCL	ENSG00000035403.18	ENST00000623461.3:ENST00000372755.7:ENST00000624354.3:ENST00000211998.10:ENST00000478896.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	38	2	2.4458	2.466365	2.48693	0.0425977	0.0338094	0.148082	0.146709
chr11	47807895	47807995	4951747	0	-	0.33	(0.32,0.35]	chr11	464555	1	SS5_PROX	SS5_PROX:INTRON	NUP160	ENSG00000030066.14	ENST00000694866.1:ENST00000378460.7:ENST00000530326.5:ENST00000528071.5	protein_coding	protein_coding	protein_coding	protein_coding	2	38	2	2.4458	2.466365	2.48693	0.0425977	0.0338094	0.148082	0.146709
chr15	50571531	50571629	6172087	0	-	0.326531	(0.32,0.35]	chr15	588197	10	INTRON	INTRON	TRPM7	ENSG00000092439.16	ENST00000561267.5:ENST00000646667.1:ENST00000560955.5:ENST00000561443.5:ENST00000560516.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	38	2	2.4458	2.466365	2.48693	0.0425977	0.0338094	0.148082	0.146709
chr21	22333100	22333200	7385699	0	+	0.33	(0.32,0.35]	chr21	752727	1199	INTRON	INTRON	ENSG00000226043	ENSG00000226043.2	ENST00000667099.1:ENST00000654607.1:ENST00000444130.1	lncRNA	lncRNA	lncRNA	lncRNA	2	38	2	2.4458	2.466365	2.48693	0.0425977	0.0338094	0.148082	0.146709
chr10	70160114	70160211	4640781	0	-	0.298969	(0.28,0.32]	chr10	426888	19	INTRON	INTRON	SAR1A	ENSG00000079332.15	ENST00000373242.6:ENST00000373241.9:ENST00000373238.5:ENST00000431664.6:ENST00000373236.1	protein_coding	protein_coding	protein_coding	protein_coding	4	68	2	2.25298	2.4663649999999997	2.67975	0.0252505	0.00791652	0.12011	0.0797304
chr7	119772013	119772113	3629059	0	-	0.4	(0.378,0.408]	chr7	337323	195	INTRON	INTRON	LINC02476	ENSG00000225546.6	ENST00000660268.1:ENST00000431071.5:ENST00000426413.2	lncRNA	lncRNA	lncRNA	lncRNA	6	89	2	2.39664	2.46633	2.53602	0.00480522	0.0020933	0.0602209	0.0424943
chr9	112161791	112161890	4316647	0	-	0.353535	(0.35,0.378]	chr9	396993	38	INTRON	INTRON	SUSD1	ENSG00000106868.17	ENST00000374270.8:ENST00000374263.7:ENST00000355396.7:ENST00000374264.6	protein_coding	protein_coding	protein_coding	protein_coding	5	78	2	2.20096	2.4663	2.73164	0.0087123	0.00387645	0.0844834	0.0543578
chr22	19949268	19949367	7477476	0	+	0.414141	(0.408,0.44]	chr22	762560	14	INTRON	INTRON	COMT	ENSG00000093010.15	ENST00000676678.1:ENST00000403184.5:ENST00000361682.11:ENST00000403710.5:ENST00000407537.5:ENST00000467943.5:ENST00000678868.1:ENST00000678769.1:ENST00000428707.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	64	2	1.84516	2.4662699999999997	3.08738	0.0193431	0.00478231	0.108861	0.0636201
chr1	223781490	223781587	642707	0	-	0.43299	(0.408,0.44]	chr1	75858	2	INTRON	INTRON	TP53BP2	ENSG00000143514.17	ENST00000343537.12:ENST00000391878.6:ENST00000483398.5:ENST00000498843.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	33	2	2.43988	2.46623	2.49258	0.0398236	0.0314608	0.144381	0.143072
chr12	64653213	64653313	5155425	0	+	0.43	(0.408,0.44]	chr12	488093	417	INTRON	INTRON	RASSF3	ENSG00000153179.13	ENST00000637125.1:ENST00000542104.6:ENST00000283172.8:ENST00000336061.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	33	2	2.43988	2.46623	2.49258	0.0398236	0.0314608	0.144381	0.143072
chr16	3701331	3701431	6434313	0	-	0.44	(0.408,0.44]	chr16	619370	100	INTRON	INTRON	TRAP1	ENSG00000126602.11	ENST00000246957.10:ENST00000538171.5:ENST00000571804.5:ENST00000574941.5:ENST00000576106.5:ENST00000571011.1:ENST00000570403.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	33	2	2.43988	2.46623	2.49258	0.0398236	0.0314608	0.144381	0.143072
chr16	4472045	4472142	6437597	0	-	0.412371	(0.408,0.44]	chr16	619909	2	INTRON	INTRON	NMRAL1	ENSG00000153406.14	ENST00000574733.5:ENST00000283429.11:ENST00000404295.7:ENST00000574425.5:ENST00000571291.5:ENST00000573520.5:ENST00000573571.1:ENST00000575002.5:ENST00000575557.5:ENST00000576935.5:ENST00000575995.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	33	2	2.43988	2.46623	2.49258	0.0398236	0.0314608	0.144381	0.143072
chr17	21213147	21213243	6743334	0	-	0.4375	(0.408,0.44]	chr17	662100	1	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	TMEM11	ENSG00000178307.10	ENST00000317635.6:ENST00000584432.5:ENST00000577419.5:ENST00000583264.1:ENST00000583929.1:ENST00000584732.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	33	2	2.43988	2.46623	2.49258	0.0398236	0.0314608	0.144381	0.143072
chr20	31800280	31800374	7254289	0	+	0.425532	(0.408,0.44]	chr20	736827	14	INTRON	INTRON	TPX2	ENSG00000088325.16	ENST00000340513.4:ENST00000300403.11	protein_coding	protein_coding	protein_coding	protein_coding	2	33	2	2.43988	2.46623	2.49258	0.0398236	0.0314608	0.144381	0.143072
chr10	6093060	6093160	4385730	0	+	0.45	(0.44,0.476]	chr10	404761	27	INTRON	INTRON	RBM17	ENSG00000134453.16	ENST00000379888.9:ENST00000437845.6:ENST00000432931.5:ENST00000446108.5	protein_coding	protein_coding	protein_coding	protein_coding	2	33	2	2.39604	2.46622	2.5364	0.0404291	0.0309324	0.161534	0.13151
chr17	44151840	44151938	6615571	0	+	0.469388	(0.44,0.476]	chr17	645092	4	INTRON	INTRON	HROB	ENSG00000125319.15	ENST00000319977.8:ENST00000585683.6:ENST00000245382.6:ENST00000588434.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	33	2	2.39604	2.46622	2.5364	0.0404291	0.0309324	0.161534	0.13151
chr16	21873666	21873765	6461980	0	-	0.343434	(0.32,0.35]	chr16	623467	75	INTRON	INTRON	NPIPB4	ENSG00000185864.18	ENST00000543449.1:ENST00000538859.1	protein_coding	processed_transcript	protein_coding	processed_transcript	8	117	2	1.66083	2.46606	3.27129	0.0178056	4.56534e-4	0.113505	0.0196892
chr2	235497047	235497147	1041365	0	+	0.42	(0.408,0.44]	chr2	111217	18	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	86	2	2.39349	2.46605	2.53861	0.00467273	0.00202413	0.0600108	0.0416117
chr10	121884040	121884139	4709386	0	-	0.444444	(0.44,0.476]	chr10	434485	51	INTRON	INTRON	ATE1	ENSG00000107669.19	ENST00000369043.8:ENST00000224652.12:ENST00000693411.1:ENST00000540606.7:ENST00000690773.1:ENST00000686894.1:ENST00000685890.1:ENST00000687583.1:ENST00000693276.1:ENST00000686451.1:ENST00000687319.1:ENST00000686786.1:ENST00000684967.1:ENST00000689057.1:ENST00000692329.1:ENST00000689393.1:ENST00000689571.1:ENST00000692718.1:ENST00000688526.1:ENST00000692034.1:ENST00000690128.1:ENST00000690748.1:ENST00000692491.1:ENST00000369040.9:ENST00000691087.1:ENST00000691830.1:ENST00000687089.1:ENST00000693486.1:ENST00000690355.1:ENST00000691765.1:ENST00000691226.1:ENST00000692743.1:ENST00000691108.1:ENST00000689297.1:ENST00000685427.1:ENST00000692513.1:ENST00000688057.1:ENST00000684876.1:ENST00000687607.1:ENST00000688424.1:ENST00000692255.1:ENST00000690706.1:ENST00000693395.1:ENST00000690324.1:ENST00000692278.1:ENST00000687144.1:ENST00000691573.1:ENST00000685289.1:ENST00000686907.1:ENST00000687206.1:ENST00000685007.1:ENST00000686811.1:ENST00000691041.1:ENST00000423243.7:ENST00000689834.1:ENST00000689455.1:ENST00000693655.1:ENST00000690488.1:ENST00000687458.1:ENST00000685072.1:ENST00000692087.1:ENST00000690415.1:ENST00000687935.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	53	2	1.75627	2.465995	3.17572	0.0380723	0.00427037	0.157702	0.0573912
chr14	49836442	49836542	5887095	0	-	0.45	(0.44,0.476]	chr14	558777	16	INTRON	INTRON	NEMF	ENSG00000165525.18	ENST00000298310.10:ENST00000555970.5:ENST00000557380.5:ENST00000554626.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	53	2	1.75627	2.465995	3.17572	0.0380723	0.00427037	0.157702	0.0573912
chr2	61430117	61430217	1130147	0	-	0.61	(0.57,1]	chr2	121499	89	INTRON	INTRON	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000453133.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	29	2	1.52865	2.46599	3.40333	0.0730445	9.20604e-4	0.189414	0.0278392
chr5	177520082	177520181	2778074	0	-	0.626263	(0.57,1]	chr5	261908	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	FAM193B	ENSG00000146067.16	ENST00000514747.6:ENST00000505569.5:ENST00000513282.5:ENST00000506955.5:ENST00000510479.5:ENST00000510163.5:ENST00000506879.5:ENST00000524677.5:ENST00000504130.5:ENST00000507212.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	29	2	1.52865	2.46599	3.40333	0.0730445	9.20604e-4	0.189414	0.0278392
chr16	88718554	88718647	6539493	0	-	0.419355	(0.408,0.44]	chr16	633839	9	EXON_MRNA	EXON_MRNA:INTRON	PIEZO1	ENSG00000103335.22	ENST00000301015.14:ENST00000419505.5:ENST00000484567.6:ENST00000495568.7:ENST00000466823.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	18	246	2	2.26658	2.4659899999999997	2.6654	2.72295e-4	8.44077e-5	0.0146728	0.00821532
chr21	37080209	37080308	7404890	0	+	0.20202	[0,0.28]	chr21	754521	64	INTRON	INTRON	TTC3	ENSG00000182670.14	ENST00000492275.6:ENST00000418766.6:ENST00000485402.5:ENST00000450533.6:ENST00000438055.5:ENST00000696812.1:ENST00000696811.1:ENST00000463216.6:ENST00000481605.6:ENST00000540756.5:ENST00000494243.5:ENST00000399010.5:ENST00000411496.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	76	2	1.99345	2.465975	2.9385	0.0211881	0.0142776	0.123133	0.0963703
chr6	75666311	75666411	2905602	0	+	0.28	[0,0.28]	chr6	274543	2	SS3_PROX	SS3_PROX:INTRON	SENP6	ENSG00000112701.18	ENST00000370010.6:ENST00000447266.7:ENST00000327284.12:ENST00000424947.6	protein_coding	protein_coding	protein_coding	protein_coding	3	63	2	2.28885	2.46597	2.64309	0.0308646	0.0181093	0.13151	0.114853
chr3	196071674	196071750	1897446	0	-	0.526316	(0.515,0.57]	chr3	189962	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TFRC	ENSG00000072274.13	ENST00000420415.5:ENST00000360110.9:ENST00000392396.7:ENST00000421258.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	22	250	2	2.38027	2.46589	2.55151	1.49496e-4	1.75766e-5	0.011202	0.00319082
chr8	18007580	18007678	3708619	0	+	0.316327	(0.28,0.32]	chr8	343996	8	INTRON	INTRON	PCM1	ENSG00000078674.19	ENST00000325083.13:ENST00000519253.5:ENST00000524226.5:ENST00000522275.5:ENST00000521338.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	104	2	1.81492	2.465825	3.11673	0.0253829	6.61685e-4	0.12011	0.0232856
chr21	39301175	39301275	7465418	0	-	0.43	(0.408,0.44]	chr21	760568	22	INTRON	INTRON	BRWD1	ENSG00000185658.14	ENST00000333229.6:ENST00000342449.8:ENST00000380800.7:ENST00000341322.4:ENST00000470108.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	18	236	2	2.4578700000000002	2.4656900000000004	2.47351	5.35221e-4	4.91807e-5	0.0214271	0.00573787
chr1	21777061	21777161	396809	0	-	0.46	(0.44,0.476]	chr1	47345	189	INTRON	INTRON	USP48	ENSG00000090686.16	ENST00000400301.5:ENST00000308271.14:ENST00000529637.5:ENST00000421625.6:ENST00000527823.5:ENST00000532737.1:ENST00000489108.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	111	2	1.57894	2.465605	3.35227	0.0075692	0.0022005699999999998	0.0773151	0.0417893
chr19	1616918	1617017	7112743	0	-	0.383838	(0.378,0.408]	chr19	714593	7	INTRON	INTRON	TCF3	ENSG00000071564.17	ENST00000344749.9:ENST00000611869.5:ENST00000262965.12:ENST00000588136.7:ENST00000453954.6:ENST00000593064.5:ENST00000592628.5:ENST00000590684.5:ENST00000590436.5:ENST00000651991.1:ENST00000395423.7:ENST00000585855.2:ENST00000610756.4:ENST00000590605.2:ENST00000586410.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	46	2	1.76032	2.465605	3.17089	0.0721577	0.00357279	0.187433	0.0548435
chr7	100816991	100817091	3587710	0	-	0.54	(0.515,0.57]	chr7	334694	4	SS5_PROX	SS5_PROX:INTRON	EPHB4	ENSG00000196411.10	ENST00000358173.8:ENST00000616502.4:ENST00000360620.7:ENST00000487222.5:ENST00000477446.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	47	2	2.01978	2.4655899999999997	2.9114	0.0165522	0.00826019	0.102621	0.0813266
chr10	125058429	125058529	4713313	0	-	0.6	(0.57,1]	chr10	434897	189	INTRON	INTRON	CTBP2	ENSG00000175029.17	ENST00000337195.9:ENST00000411419.6:ENST00000494626.6:ENST00000531469.5:ENST00000460976.5:ENST00000476817.1:ENST00000530884.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	29	2	2.01216	2.4655250000000004	2.91889	0.0163389	0.00719009	0.101571	0.0756118
chr2	232857648	232857746	1038898	0	+	0.367347	(0.35,0.378]	chr2	110850	9	UTR3	UTR3:EXON_MRNA	GIGYF2	ENSG00000204120.16	ENST00000629305.2:ENST00000409480.5:ENST00000373563.9:ENST00000409547.5:ENST00000409196.7:ENST00000409451.7:ENST00000677591.1:ENST00000678230.1:ENST00000678339.1:ENST00000677450.1:ENST00000678466.1:ENST00000678885.1:ENST00000676848.1:ENST00000474312.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	50	2	2.28125	2.465525	2.6498	0.0210137	0.0182271	0.122348	0.107842
chr3	177078331	177078431	1871240	0	-	0.47	(0.44,0.476]	chr3	187368	3	SS5_PROX	SS5_PROX:INTRON	TBL1XR1	ENSG00000177565.18	ENST00000457928.7:ENST00000430069.5:ENST00000673974.1:ENST00000631253.2:ENST00000352800.10:ENST00000422442.6:ENST00000428970.5:ENST00000424913.5:ENST00000437738.5:ENST00000431421.5:ENST00000635794.1:ENST00000630796.2:ENST00000450267.5:ENST00000630833.2:ENST00000431674.5:ENST00000422066.5:ENST00000443315.5:ENST00000627825.2:ENST00000427349.5:ENST00000413084.5:ENST00000637137.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	72	2	2.29126	2.46544	2.63962	0.0165638	0.00126329	0.102621	0.0329641
chr1	1730842	1730941	361283	0	-	0.50505	(0.476,0.515]	chr1	42112	51	INTRON	INTRON	ENSG00000268575:SLC35E2A	ENSG00000268575.1:ENSG00000215790.8	ENST00000598846.1:ENST00000647043.1	lncRNA	lncRNA	lncRNA:transcribed_unprocessed_pseudogene	lncRNA:processed_transcript	9	118	2	1.95422	2.465425	2.97663	0.00584847	2.26055e-4	0.0667594	0.0132815
chr7	2370579	2370679	3269792	0	+	0.48	(0.476,0.515]	chr7	303844	5	INTRON	INTRON	EIF3B	ENSG00000106263.19	ENST00000360876.9:ENST00000397011.2:ENST00000466199.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	44	2	1.79693	2.46541	3.13389	0.0649782	0.00405473	0.179417	0.0578376
chr20	47317754	47317854	7349121	0	-	0.53	(0.515,0.57]	chr20	749342	72	INTRON	INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000468376.2:ENST00000435836.5:ENST00000446894.5:ENST00000441977.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	39	2	2.27238	2.46536	2.65834	0.0187418	0.0161808	0.117523	0.101453
chr1	1106041	1106127	358710	0	-	0.383721	(0.378,0.408]	chr1	41368	2	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	C1orf159	ENSG00000131591.18	ENST00000379339.5:ENST00000379325.7:ENST00000421241.7:ENST00000467751.5:ENST00000477196.5:ENST00000379319.5:ENST00000434641.5:ENST00000482816.5:ENST00000462097.5:ENST00000475119.5:ENST00000472741.5:ENST00000480643.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	46	2	2.00398	2.465315	2.92665	0.0393906	0.0086017	0.143072	0.083729
chr16	70300152	70300252	6384058	0	+	0.44	(0.408,0.44]	chr16	613583	4	INTRON	INTRON	DDX19B:ENSG00000260537	ENSG00000157349.17:ENSG00000260537.2	ENST00000566216.5:ENST00000563392.5:ENST00000563206.5:ENST00000570055.5:ENST00000451014.7:ENST00000568625.5:ENST00000569099.6:ENST00000562519.5:ENST00000393657.6:ENST00000568008.5:ENST00000562912.5:ENST00000288071.11:ENST00000568460.5:ENST00000565116.1:ENST00000355992.7:ENST00000568408.5:ENST00000567706.1:ENST00000443119.7:ENST00000569224.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	49	2	2.3975	2.465315	2.53313	0.040266	0.00739595	0.161534	0.074277
chr7	104134382	104134482	3599697	0	-	0.38	(0.378,0.408]	chr7	335939	71	INTRON	INTRON	ORC5	ENSG00000164815.11	ENST00000297431.9:ENST00000422497.5:ENST00000477223.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	46	2	2.00398	2.465315	2.92665	0.0393906	0.0086017	0.143072	0.083729
chr5	62322365	62322465	2362194	0	+	0.26	[0,0.28]	chr5	227725	101	INTRON	INTRON	KIF2A	ENSG00000068796.19	ENST00000401507.7:ENST00000407818.8:ENST00000674632.1:ENST00000674916.1:ENST00000676413.1:ENST00000676122.1:ENST00000674751.1:ENST00000514082.6:ENST00000675085.1:ENST00000504883.2:ENST00000381103.7:ENST00000676271.1:ENST00000512541.5:ENST00000674733.1:ENST00000506857.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	64	2	2.44242	2.465275	2.48813	0.0491024	0.00953591	0.155269	0.0863913
chr12	122514728	122514772	5442124	0	-	0.295455	(0.28,0.32]	chr12	520563	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RSRC2	ENSG00000111011.18	ENST00000331738.12:ENST00000532695.5:ENST00000433877.6:ENST00000527173.6:ENST00000525335.6:ENST00000344591.8:ENST00000528263.1:ENST00000527399.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	85	2	1.69688	2.465215	3.23355	0.0219684	0.004869	0.123836	0.0607461
chr2	174089150	174089249	1269254	0	-	0.40404	(0.378,0.408]	chr2	134263	67	INTRON	INTRON	OLA1	ENSG00000138430.16	ENST00000284719.8:ENST00000344357.9:ENST00000428402.6:ENST00000409546.5:ENST00000392560.6:ENST00000462000.1:ENST00000429575.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	35	2	2.26252	2.465185	2.66785	0.056222	0.0224639	0.18407	0.11692
chr21	43888299	43888399	7414021	0	+	0.39	(0.378,0.408]	chr21	755692	53	INTRON	INTRON	AGPAT3	ENSG00000160216.21	ENST00000291572.13:ENST00000448287.5:ENST00000398061.5	protein_coding	protein_coding	protein_coding	protein_coding	2	35	2	2.26252	2.465185	2.66785	0.056222	0.0224639	0.18407	0.11692
chr5	97188508	97188608	2436858	0	+	0.38	(0.378,0.408]	chr5	234107	42	INTRON	INTRON	LIX1-AS1:ENSG00000286828	ENSG00000251513.2:ENSG00000286828.1	ENST00000504578.2:ENST00000654632.1	lncRNA	lncRNA	lncRNA	lncRNA	2	35	2	2.26252	2.465185	2.66785	0.056222	0.0224639	0.18407	0.11692
chr17	81581034	81581133	6849029	0	-	0.50505	(0.476,0.515]	chr17	678158	86	INTRON	INTRON	NPLOC4	ENSG00000182446.14	ENST00000331134.11:ENST00000374747.9:ENST00000574897.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	44	2	2.05154	2.465165	2.87879	0.0336015	0.00999149	0.134145	0.0879541
chr19	23915695	23915794	7043539	0	+	0.515152	(0.476,0.515]	chr19	702270	3	INTRON	INTRON	ZNF726	ENSG00000213967.12	ENST00000525354.6:ENST00000334589.9:ENST00000531821.6:ENST00000594466.6:ENST00000575986.1	protein_coding	protein_coding	protein_coding	protein_coding	3	44	2	2.05154	2.465165	2.87879	0.0336015	0.00999149	0.134145	0.0879541
chr5	40795971	40796070	2611146	0	-	0.50505	(0.476,0.515]	chr5	248269	59	INTRON	INTRON	PRKAA1	ENSG00000132356.12	ENST00000397128.7:ENST00000354209.7:ENST00000506652.5:ENST00000509874.5:ENST00000296800.4:ENST00000511248.1:ENST00000397006.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	44	2	2.05154	2.465165	2.87879	0.0336015	0.00999149	0.134145	0.0879541
chr6	16136993	16137092	2825852	0	+	0.343434	(0.32,0.35]	chr6	265309	59	INTRON	INTRON	MYLIP	ENSG00000007944.15	ENST00000356840.8:ENST00000349606.4	protein_coding	protein_coding	protein_coding	protein_coding	14	163	2	1.63845	2.46514	3.29183	0.00662964	4.15812e-4	0.0738715	0.0188225
chr4	39962935	39963035	2132055	0	-	0.25	[0,0.28]	chr4	210242	344	INTRON	INTRON	PDS5A	ENSG00000121892.15	ENST00000303538.13:ENST00000503396.5	protein_coding	protein_coding	protein_coding	protein_coding	6	97	2	1.65319	2.465135	3.27708	0.0275612	0.00517359	0.137011	0.0631676
chr16	21416557	21416654	6460471	0	-	0.247423	[0,0.28]	chr16	623184	11	INTRON	INTRON	NPIPB3	ENSG00000169246.16	ENST00000504841.6:ENST00000419180.6:ENST00000448012.6:ENST00000519305.6:ENST00000521589.5:ENST00000534903.1:ENST00000538439.1:ENST00000545358.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	86	2	2.36941	2.46507	2.56073	0.0178556	0.00743095	0.106151	0.0772645
chr21	46245595	46245694	7420945	0	+	0.373737	(0.35,0.378]	chr21	756648	23	EXON_LNCRNA	EXON_LNCRNA:INTRON	MCM3AP-AS1	ENSG00000215424.10	ENST00000455567.2:ENST00000590829.5:ENST00000669476.1:ENST00000656253.1:ENST00000664725.1:ENST00000670190.1:ENST00000414659.5:ENST00000662666.1	lncRNA	lncRNA	lncRNA	lncRNA	6	93	2	1.7339	2.46505	3.1962	0.0260366	5.54078e-4	0.133676	0.0216641
chr5	140402972	140403072	2502837	0	+	0.45	(0.44,0.476]	chr5	239166	3	INTRON	INTRON	ANKHD1	ENSG00000131503.21	ENST00000297183.10:ENST00000616482.4:ENST00000360839.7:ENST00000421134.5:ENST00000394723.7:ENST00000511151.5:ENST00000394722.7	protein_coding	protein_coding	protein_coding	protein_coding	3	45	2	1.85146	2.46504	3.07862	0.0545846	0.0060153	0.182529	0.0674604
chr19	41302204	41302298	7071439	0	+	0.457447	(0.44,0.476]	chr19	706791	1	SS3_PROX	SS3_PROX:INTRON	HNRNPUL1	ENSG00000105323.18	ENST00000352456.7:ENST00000595018.5:ENST00000392006.8:ENST00000378215.8:ENST00000595196.5:ENST00000617774.1:ENST00000602130.5:ENST00000593587.5:ENST00000263367.7:ENST00000599614.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	152	2	2.40398	2.4649799999999997	2.52598	7.39061e-4	4.52247e-4	0.0249744	0.0192381
chr9	131414521	131414620	4217174	0	+	0.525253	(0.515,0.57]	chr9	386720	199	INTRON	INTRON	PRRC2B	ENSG00000288701.1	ENST00000682525.1:ENST00000684596.1:ENST00000683519.1:ENST00000682501.1	protein_coding	protein_coding	protein_coding	protein_coding	18	196	2	1.9842	2.46489	2.94558	0.00100513	1.30497e-5	0.0289838	0.00267343
chr20	29084055	29084154	7252535	0	+	0.30303	(0.28,0.32]	chr20	736513	10	INTRON	INTRON	FRG1DP	ENSG00000282870.1	ENST00000635586.1	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	5	92	2	2.25939	2.46488	2.67037	0.021772	0.00141946	0.11491	0.034662
chr9	135960624	135960724	4372565	0	-	0.63	(0.57,1]	chr9	402554	2	SS5_PROX	SS5_PROX:INTRON	UBAC1	ENSG00000130560.9	ENST00000371756.4:ENST00000478485.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	37	2	1.9324	2.464845	2.99729	0.00747247	0.00538023	0.0772645	0.0642754
chr4	39721048	39721148	1953221	0	+	0.36	(0.35,0.378]	chr4	195630	223	INTRON	INTRON	UBE2K	ENSG00000078140.14	ENST00000510934.5:ENST00000261427.10:ENST00000438068.6:ENST00000513231.5:ENST00000503368.5:ENST00000445950.2:ENST00000510719.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	14	210	2	2.1107	2.46478	2.81886	0.00256726	2.96918e-5	0.0451274	0.00433427
chr11	62886768	62886868	4799659	0	+	0.53	(0.515,0.57]	chr11	444849	2	SS5_PROX	SS5_PROX:INTRON	SLC3A2	ENSG00000168003.18	ENST00000680729.1:ENST00000680002.1:ENST00000681467.1:ENST00000377890.6:ENST00000538084.2:ENST00000681569.1:ENST00000680725.1:ENST00000377891.6:ENST00000377889.6:ENST00000535296.5:ENST00000680631.1:ENST00000544377.2:ENST00000680610.1:ENST00000680297.1:ENST00000680134.1:ENST00000681232.1:ENST00000681657.1:ENST00000541425.6:ENST00000679908.1:ENST00000681563.1:ENST00000338663.12:ENST00000680654.1:ENST00000681107.1:ENST00000541649.2:ENST00000538682.6:ENST00000536981.6:ENST00000539891.6:ENST00000679594.1:ENST00000535768.2:ENST00000542922.5:ENST00000539507.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	74	2	2.06758	2.46471	2.86184	0.0140038	3.55958e-4	0.0959618	0.0168968
chr10	45992137	45992237	4430583	0	+	0.46	(0.44,0.476]	chr10	408492	29	INTRON	INTRON	TIMM23	ENSG00000265354.4	ENST00000580018.4	protein_coding	protein_coding	protein_coding	protein_coding	7	101	2	2.42643	2.4646999999999997	2.50297	0.0033369	0.00135188	0.0528877	0.0336321
chr17	7310817	7310917	6552831	0	+	0.4	(0.378,0.408]	chr17	636347	4	SS3_PROX	SS3_PROX:INTRON	EIF5A	ENSG00000132507.18	ENST00000336452.11:ENST00000576930.5:ENST00000572815.5:ENST00000573542.5:ENST00000336458.13:ENST00000419711.6:ENST00000571955.5:ENST00000573714.5:ENST00000416016.2	protein_coding	protein_coding	protein_coding	protein_coding	6	86	2	1.89052	2.4646999999999997	3.03888	0.0148147	0.00102794	0.106702	0.029231300000000002
chr1	180704798	180704898	270324	0	+	0.31	(0.28,0.32]	chr1	31620	220	INTRON	INTRON	XPR1	ENSG00000143324.14	ENST00000367590.9:ENST00000367589.3	protein_coding	protein_coding	protein_coding	protein_coding	2	41	2	2.18975	2.4646	2.73945	0.0776042	0.017681	0.196285	0.11319
chr7	127367749	127367849	3633991	0	-	0.33	(0.32,0.35]	chr7	337749	31	INTRON	INTRON	ZNF800	ENSG00000048405.11	ENST00000485577.1	protein_coding	processed_transcript	protein_coding	processed_transcript	8	115	2	1.93022	2.4646	2.99898	0.00608869	0.00148392	0.0705469	0.034977
chr8	102835111	102835202	4012937	0	-	0.285714	(0.28,0.32]	chr8	367299	5	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	AZIN1	ENSG00000155096.15	ENST00000681985.1:ENST00000684566.1:ENST00000682725.1:ENST00000337198.10:ENST00000684459.1:ENST00000683787.1:ENST00000682014.1:ENST00000682969.1:ENST00000684721.1:ENST00000683965.1:ENST00000347770.8:ENST00000523071.1:ENST00000521536.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	41	2	2.18975	2.4646	2.73945	0.0776042	0.017681	0.196285	0.11319
chr10	5782941	5783041	4544610	0	-	0.27	[0,0.28]	chr10	419772	86	INTRON	INTRON	GDI2	ENSG00000057608.17	ENST00000380191.9:ENST00000447751.5:ENST00000380181.7:ENST00000456041.5	protein_coding	protein_coding	protein_coding	protein_coding	4	76	2	2.02929	2.464555	2.89982	0.0189138	0.0158893	0.118303	0.101453
chr2	190929556	190929651	959988	0	+	0.557895	(0.515,0.57]	chr2	104233	15	INTRON	INTRON	GLS	ENSG00000115419.13	ENST00000320717.8:ENST00000338435.8:ENST00000409626.5:ENST00000457316.5:ENST00000409428.5:ENST00000409215.5	protein_coding	protein_coding	protein_coding	protein_coding	3	38	2	1.8707	2.464545	3.05839	0.0523213	0.00485936	0.160182	0.0640618
chr1	54046574	54046670	461526	0	-	0.427083	(0.408,0.44]	chr1	55608	4	INTRON	INTRON	TMEM59	ENSG00000116209.12	ENST00000234831.10:ENST00000371348.5:ENST00000371341.5:ENST00000440019.5:ENST00000420738.5:ENST00000452421.5:ENST00000371337.3	protein_coding	protein_coding	protein_coding	protein_coding	3	44	2	2.27464	2.46442	2.6542	0.0227514	0.0158016	0.117618	0.109464
chr12	121316979	121317079	5436810	0	-	0.42	(0.408,0.44]	chr12	519847	66	INTRON	INTRON	ANAPC5	ENSG00000089053.13	ENST00000261819.8:ENST00000535641.5:ENST00000541887.5:ENST00000534976.5:ENST00000441917.6:ENST00000539079.5:ENST00000544314.5:ENST00000535482.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	44	2	2.27464	2.46442	2.6542	0.0227514	0.0158016	0.117618	0.109464
chr2	201056142	201056241	1311742	0	-	0.414141	(0.408,0.44]	chr2	137309	35	INTRON	INTRON	FAM126B	ENSG00000155744.10	ENST00000681958.1:ENST00000418596.7:ENST00000286181.7:ENST00000498780.5:ENST00000452799.5:ENST00000453765.5:ENST00000446678.5:ENST00000474118.5:ENST00000485636.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	44	2	2.27464	2.46442	2.6542	0.0227514	0.0158016	0.117618	0.109464
chr5	10723971	10724071	2567954	0	-	0.42	(0.408,0.44]	chr5	246124	400	INTRON	INTRON	DAP	ENSG00000112977.16	ENST00000230895.11:ENST00000432074.2:ENST00000514882.5:ENST00000508253.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	44	2	2.27464	2.46442	2.6542	0.0227514	0.0158016	0.117618	0.109464
chr7	65071744	65071844	3321721	0	+	0.43	(0.408,0.44]	chr7	308846	2	SS3_PROX	SS3_PROX:INTRON	CCT6P3	ENSG00000234585.6	ENST00000419314.5:ENST00000426828.5:ENST00000452026.1	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript:transcribed_unprocessed_pseudogene	3	44	2	2.27464	2.46442	2.6542	0.0227514	0.0158016	0.117618	0.109464
chr7	97161014	97161114	3357394	0	+	0.44	(0.408,0.44]	chr7	313218	178	INTRON	INTRON	SDHAF3	ENSG00000196636.8	ENST00000432641.3:ENST00000360382.4:ENST00000479853.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	44	2	2.27464	2.46442	2.6542	0.0227514	0.0158016	0.117618	0.109464
chr1	109216738	109216837	179620	0	+	0.474747	(0.44,0.476]	chr1	19612	17	INTRON	INTRON	SARS1	ENSG00000031698.13	ENST00000234677.7:ENST00000477544.5:ENST00000369923.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	22	231	2	1.67759	2.46441	3.25123	0.00249849	2.50121e-5	0.0463422	0.004128
chr5	154437527	154437626	2755988	0	-	0.555556	(0.515,0.57]	chr5	259913	8	INTRON	INTRON	SAP30L-AS1	ENSG00000245275.8	ENST00000658072.1:ENST00000519727.5:ENST00000652933.1:ENST00000524264.6:ENST00000652895.1:ENST00000501280.4	lncRNA	lncRNA	lncRNA	lncRNA	3	38	2	2.01737	2.464385	2.9114	0.0352218	0.00826019	0.137535	0.0813266
chr15	74920942	74921037	6222839	0	-	0.315789	(0.28,0.32]	chr15	594263	1	INTRON	INTRON	COX5A	ENSG00000178741.12	ENST00000322347.11:ENST00000567270.5:ENST00000562233.5:ENST00000568783.5:ENST00000568517.1	protein_coding	protein_coding	protein_coding	protein_coding	2	41	2	2.39347	2.464345	2.53522	0.0504457	0.0310424	0.156383	0.143457
chr16	66886367	66886465	6365132	0	+	0.295918	(0.28,0.32]	chr16	611322	6	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	PDP2	ENSG00000172840.7	ENST00000311765.4:ENST00000566805.5:ENST00000568720.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	41	2	2.39347	2.464345	2.53522	0.0504457	0.0310424	0.156383	0.143457
chr16	87381208	87381308	6537804	0	-	0.29	(0.28,0.32]	chr16	633434	129	INTRON	INTRON	FBXO31	ENSG00000103264.18	ENST00000311635.12:ENST00000565593.1:ENST00000618298.6:ENST00000636077.1:ENST00000569412.5:ENST00000563956.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	41	2	2.39347	2.464345	2.53522	0.0504457	0.0310424	0.156383	0.143457
chr4	56393659	56393759	2151222	0	-	0.32	(0.28,0.32]	chr4	211738	4	UTR3	UTR3:EXON_MRNA	PPAT	ENSG00000128059.8	ENST00000264220.6:ENST00000425339.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	41	2	2.39347	2.464345	2.53522	0.0504457	0.0310424	0.156383	0.143457
chr5	180571532	180571632	2562647	0	+	0.44	(0.408,0.44]	chr5	245139	1	SS5_PROX	SS5_PROX:INTRON	CNOT6	ENSG00000113300.13	ENST00000261951.9:ENST00000393356.7:ENST00000618123.4	protein_coding	protein_coding	protein_coding	protein_coding	3	44	2	2.14732	2.46427	2.78122	0.0237354	0.015812	0.129075	0.101453
chr17	46190319	46190419	6784844	0	-	0.37	(0.35,0.378]	chr17	669245	177	INTRON	INTRON	KANSL1	ENSG00000120071.15	ENST00000574590.6:ENST00000572904.6:ENST00000432791.7:ENST00000575318.6:ENST00000638275.1:ENST00000262419.10:ENST00000648792.1:ENST00000639150.1:ENST00000571698.2:ENST00000639375.1:ENST00000638269.1:ENST00000639356.1:ENST00000574655.6:ENST00000639099.1:ENST00000638902.1:ENST00000576739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	48	2	1.87717	2.464265	3.05136	0.0555068	0.00578894	0.165463	0.0684334
chr22	16634348	16634448	7473690	0	+	0.36	(0.35,0.378]	chr22	762000	111	INTRON	INTRON	TPTEP1	ENSG00000100181.22	ENST00000558085.6:ENST00000400593.6:ENST00000426585.5:ENST00000383140.7	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	3	48	2	1.87717	2.464265	3.05136	0.0555068	0.00578894	0.165463	0.0684334
chr12	94402875	94402973	5389537	0	-	0.295918	(0.28,0.32]	chr12	513857	2	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	CEP83	ENSG00000173588.16	ENST00000397809.10:ENST00000339839.9:ENST00000547232.5:ENST00000547575.5:ENST00000549352.1:ENST00000551078.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	13	212	2	1.99274	2.4642299999999997	2.93572	0.00228428	3.09559e-4	0.0438086	0.0162047
chr9	89313198	89313296	4152980	0	+	0.306122	(0.28,0.32]	chr9	378777	5	INTRON	INTRON	CKS2	ENSG00000123975.5	ENST00000314355.7	protein_coding	protein_coding	protein_coding	protein_coding	4	69	2	1.9021	2.46421	3.02632	0.0304779	0.0071944	0.130699	0.0756118
chr1	31929938	31930038	414351	0	-	0.38	(0.378,0.408]	chr1	49922	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	PTP4A2	ENSG00000184007.22	ENST00000647444.2:ENST00000649841.1:ENST00000468531.1:ENST00000534796.5:ENST00000532289.1:ENST00000526960.1:ENST00000524384.5:ENST00000528840.1:ENST00000494444.2:ENST00000529477.5:ENST00000533408.1:ENST00000475464.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	71	2	1.92269	2.464185	3.00568	0.00836891	0.00811866	0.0822143	0.0766625
chr17	67207927	67208026	6825452	0	-	0.494949	(0.476,0.515]	chr17	674529	41	INTRON	INTRON	HELZ	ENSG00000198265.12	ENST00000358691.10:ENST00000579953.5:ENST00000580168.5:ENST00000417253.7:ENST00000580662.5:ENST00000584641.5:ENST00000581159.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:non_stop_decay:nonsense_mediated_decay:processed_transcript	6	70	2	2.04194	2.46412	2.8863	0.0111679	0.00499341	0.0877435	0.0646039
chr10	22601049	22601148	4579359	0	-	0.40404	(0.378,0.408]	chr10	422005	89	INTRON	INTRON	PIP4K2A	ENSG00000150867.14	ENST00000376573.9:ENST00000545335.5:ENST00000422321.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	90	2	2.39048	2.4640050000000002	2.53753	0.00395852	0.00271682	0.057511	0.0467523
chr6	37875786	37875886	2857593	0	+	0.37	(0.35,0.378]	chr6	270225	554	INTRON	INTRON	ZFAND3	ENSG00000156639.12	ENST00000287218.9:ENST00000373391.6:ENST00000474522.5	protein_coding	protein_coding	protein_coding	protein_coding	4	58	2	1.56287	2.464005	3.36514	0.0697648	0.00173699	0.184298	0.03851
chr10	21682954	21683053	4405917	0	+	0.323232	(0.32,0.35]	chr10	406529	3	INTRON	INTRON	MLLT10	ENSG00000078403.17	ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000651298.1:ENST00000377059.7:ENST00000651382.1:ENST00000438473.6:ENST00000420525.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	51	2	2.07985	2.463985	2.84812	0.0303092	0.0147575	0.143025	0.0983813
chr2	27386818	27386908	1087072	0	-	0.333333	(0.32,0.35]	chr2	116457	7	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	PPM1G	ENSG00000115241.11	ENST00000472077.1:ENST00000344034.5:ENST00000484925.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	51	2	2.07985	2.463985	2.84812	0.0303092	0.0147575	0.143025	0.0983813
chr8	31036672	31036772	3727960	0	+	0.21	[0,0.28]	chr8	346522	23	INTRON	INTRON	WRN	ENSG00000165392.11	ENST00000650667.1:ENST00000298139.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	87	2	1.77685	2.463935	3.15102	0.0259533	0.00767596	0.133676	0.0753665
chr11	768647	768745	4889640	0	-	0.428571	(0.408,0.44]	chr11	457802	14	UTR3	UTR3:EXON_MRNA:INTRON	GATD1	ENSG00000177225.17	ENST00000465313.6:ENST00000319863.13:ENST00000397472.6:ENST00000528309.5:ENST00000354286.8:ENST00000526325.5:ENST00000526650.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	14	177	2	1.89243	2.4638999999999998	3.03537	0.00312059	5.12176e-5	0.0498771	0.00585477
chr3	37365779	37365879	1397008	0	+	0.42	(0.408,0.44]	chr3	146466	3	SS3_PROX	SS3_PROX:INTRON	GOLGA4	ENSG00000144674.17	ENST00000444882.5:ENST00000356847.8:ENST00000361924.7:ENST00000437131.1	protein_coding	protein_coding	protein_coding	protein_coding	13	178	2	2.29543	2.46387	2.63231	0.0013047	8.07467e-5	0.0331539	0.00750977
chr1	50541525	50541625	448053	0	-	0.4	(0.378,0.408]	chr1	54189	14	INTRON	INTRON	FAF1	ENSG00000185104.21	ENST00000396153.7:ENST00000494400.5:ENST00000472808.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	62	2	2.41037	2.46385	2.51733	0.0100185	0.00808319	0.0880217	0.0766625
chr3	47502351	47502442	1682944	0	-	0.395604	(0.378,0.408]	chr3	171913	1	INTRON	INTRON	ELP6	ENSG00000163832.16	ENST00000296149.9:ENST00000442215.6:ENST00000446787.5:ENST00000439305.5:ENST00000412761.5:ENST00000444760.5:ENST00000445044.5:ENST00000461208.5:ENST00000425291.5:ENST00000494161.1:ENST00000449409.5:ENST00000414236.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	62	2	2.41037	2.46385	2.51733	0.0100185	0.00808319	0.0880217	0.0766625
chr19	40361087	40361186	7069010	0	+	0.494949	(0.476,0.515]	chr19	706109	10	INTRON	INTRON	PLD3	ENSG00000105223.20	ENST00000599685.5:ENST00000600479.5:ENST00000392032.6:ENST00000598962.5:ENST00000409419.5:ENST00000409587.5:ENST00000602131.5:ENST00000594085.5:ENST00000409735.9:ENST00000356508.9:ENST00000600948.5:ENST00000594908.5:ENST00000596682.5:ENST00000409281.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	53	2	2.16306	2.46383	2.7646	0.0162075	0.00973468	0.101453	0.0877284
chr8	102365222	102365322	4012281	0	-	0.49	(0.476,0.515]	chr8	367237	32	INTRON	INTRON	UBR5	ENSG00000104517.13	ENST00000520539.6:ENST00000220959.8:ENST00000521922.5	protein_coding	protein_coding	protein_coding	protein_coding	4	53	2	2.16306	2.46383	2.7646	0.0162075	0.00973468	0.101453	0.0877284
chr1	109372587	109372686	520766	0	-	0.474747	(0.44,0.476]	chr1	61195	26	INTRON	INTRON	SORT1	ENSG00000134243.12	ENST00000538502.5:ENST00000256637.8:ENST00000493736.5:ENST00000482236.5:ENST00000633956.1:ENST00000471996.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	100	2	2.14666	2.463815	2.78097	0.0116436	2.31078e-4	0.0889659	0.0134209
chr15	28656786	28656886	5988614	0	+	0.45	(0.44,0.476]	chr15	569359	2	SS3_PROX	SS3_PROX:INTRON	HERC2P9	ENSG00000206149.11	ENST00000529624.5:ENST00000530420.5:ENST00000528584.5	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript:transcribed_unprocessed_pseudogene	3	44	2	1.9039	2.46378	3.02366	0.0501498	0.00603307	0.156383	0.0700813
chr2	10345449	10345548	692056	0	+	0.454545	(0.44,0.476]	chr2	81133	149	INTRON	INTRON	HPCAL1	ENSG00000115756.13	ENST00000423674.5:ENST00000307845.8:ENST00000381765.7:ENST00000419810.6:ENST00000622018.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	44	2	1.9039	2.46378	3.02366	0.0501498	0.00603307	0.156383	0.0700813
chr20	49178721	49178821	7352284	0	-	0.44	(0.408,0.44]	chr20	749692	2	SS5_PROX	SS5_PROX:INTRON	STAU1	ENSG00000124214.21	ENST00000371856.7:ENST00000371828.7:ENST00000340954.11:ENST00000347458.9:ENST00000360426.8:ENST00000371792.5:ENST00000371802.5:ENST00000437404.2	protein_coding	protein_coding	protein_coding	protein_coding	3	47	2	2.18807	2.46374	2.73941	0.0708044	0.002744	0.184528	0.0484022
chr20	50534876	50534976	7286159	0	+	0.45	(0.44,0.476]	chr20	741241	239	INTRON	INTRON	PTPN1	ENSG00000196396.10	ENST00000541713.5:ENST00000371621.5	protein_coding	protein_coding	protein_coding	protein_coding	4	54	2	1.90381	2.463735	3.02366	0.0260626	0.00603307	0.122153	0.0700813
chr8	52653023	52653122	3950476	0	-	0.393939	(0.378,0.408]	chr8	362312	68	INTRON	INTRON	RB1CC1	ENSG00000023287.13	ENST00000025008.10:ENST00000435644.6:ENST00000521611.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	75	2	2.09402	2.46373	2.83344	0.0126438	0.00244811	0.0982897	0.0445777
chr4	70911843	70911943	1970600	0	+	0.35	(0.32,0.35]	chr4	197571	89	INTRON	INTRON	MOB1B	ENSG00000173542.9	ENST00000502869.5:ENST00000509041.5:ENST00000309395.7:ENST00000396051.2:ENST00000511449.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	70	2	1.76503	2.4637000000000002	3.16237	0.0240772	0.00550276	0.129859	0.0648867
chr6	34605555	34605655	3085305	0	-	0.44	(0.408,0.44]	chr6	288673	146	INTRON	INTRON	ILRUN	ENSG00000196821.10	ENST00000374026.7:ENST00000374023.8:ENST00000374021.1	protein_coding	protein_coding	protein_coding	protein_coding	7	91	2	1.70477	2.463675	3.2225799999999998	0.0215835	2.79412e-4	0.114814	0.0148832
chr19	34446410	34446508	7053307	0	+	0.418367	(0.408,0.44]	chr19	703531	9	INTRON	INTRON	UBA2	ENSG00000126261.13	ENST00000586313.1:ENST00000590048.6:ENST00000246548.9:ENST00000439527.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	114	2	1.86022	2.4636	3.06698	0.00412101	8.51999e-4	0.0586502	0.0267428
chr12	112057124	112057222	5414893	0	-	0.397959	(0.378,0.408]	chr12	517177	22	INTRON	INTRON	NAA25	ENSG00000111300.10	ENST00000261745.9:ENST00000552527.5:ENST00000549711.5:ENST00000551858.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	46	2	2.46345	2.46359	2.46373	0.0382831	0.00827342	0.141795	0.0813266
chr19	2203079	2203179	6996571	0	+	0.41	(0.408,0.44]	chr19	693472	3	SS5_PROX	SS5_PROX:INTRON	DOT1L	ENSG00000104885.19	ENST00000398665.8:ENST00000686010.1	protein_coding	protein_coding	protein_coding	protein_coding	20	266	2	1.9132	2.463585	3.01397	0.00207186	3.70383e-6	0.0411801	0.00125956
chr7	27621772	27621872	3510528	0	-	0.31	(0.28,0.32]	chr7	327330	783	INTRON	INTRON	HIBADH	ENSG00000106049.9	ENST00000265395.7:ENST00000428288.2:ENST00000425715.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	104	2	1.89468	2.46345	3.03222	0.019774	9.72587e-4	0.109608	0.0287313
chr19	28533899	28533999	7166434	0	-	0.58	(0.57,1]	chr19	724189	657	INTRON	INTRON	ENSG00000283403:ENSG00000267243	ENSG00000283403.1:ENSG00000267243.6	ENST00000592347.5:ENST00000593065.5	lncRNA	lncRNA	lncRNA	lncRNA	17	117	2	2.35315	2.46339	2.57363	1.10951e-4	3.60806e-5	0.00895084	0.00508987
chr22	20082356	20082453	7478250	0	+	0.484536	(0.476,0.515]	chr22	762700	13	INTRON	INTRON	DGCR8	ENSG00000128191.16	ENST00000383024.6:ENST00000351989.8:ENST00000457069.1	protein_coding	protein_coding	protein_coding	protein_coding	40	536	2	2.41573	2.463275	2.51082	2.18185e-5	2.0802e-5	0.00371585	0.00363933
chr15	92919384	92919484	6103885	0	+	0.47	(0.44,0.476]	chr15	581405	40	INTRON	INTRON	ENSG00000279765:CHD2	ENSG00000279765.3:ENSG00000173575.22	ENST00000629685.2:ENST00000630790.1:ENST00000626874.2:ENST00000394196.9:ENST00000635856.1:ENST00000420239.7:ENST00000628375.2:ENST00000625990.3:ENST00000626782.2:ENST00000629136.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	85	2	2.35446	2.4632300000000003	2.572	0.00536475	0.00173736	0.0642754	0.03851
chr2	200853802	200853902	1309995	0	-	0.45	(0.44,0.476]	chr2	137008	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CLK1	ENSG00000013441.17	ENST00000321356.9:ENST00000461981.5:ENST00000464454.1:ENST00000473565.5:ENST00000432425.5:ENST00000472679.1:ENST00000409769.6:ENST00000409403.6:ENST00000434813.3:ENST00000461326.1:ENST00000496205.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	44	2	2.39003	2.463215	2.5364	0.0309324	0.0106488	0.13151	0.0915714
chr14	19334671	19334761	5832374	0	-	0.355556	(0.35,0.378]	chr14	553817	2	INTRON	INTRON	DUXAP10	ENSG00000244306.11	ENST00000648085.1:ENST00000614614.4:ENST00000612696.4:ENST00000619784.4:ENST00000616922.4:ENST00000624585.3:ENST00000549065.5:ENST00000610531.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	3	48	2	1.81767	2.4631499999999997	3.10863	0.0640429	0.00470896	0.177882	0.0631419
chr11	5430052	5430152	4897520	0	-	0.23	[0,0.28]	chr11	459187	828	INTRON	INTRON	HBG2:ENSG00000239920:HBE1:OR51B5	ENSG00000196565.15:ENSG00000239920.2:ENSG00000213931.7:ENSG00000167355.8	ENST00000380252.6:ENST00000380259.7:ENST00000292896.3:ENST00000380237.5:ENST00000420726.6:ENST00000420465.6:ENST00000415970.6:ENST00000418729.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:nonsense_mediated_decay:processed_transcript	3	63	2	2.10688	2.46305	2.81922	0.0307985	0.0197411	0.143385	0.109608
chr11	3870366	3870466	4723610	0	+	0.38	(0.378,0.408]	chr11	437130	17	INTRON	INTRON	STIM1	ENSG00000167323.12	ENST00000525403.5:ENST00000526596.2:ENST00000300737.8:ENST00000616714.4:ENST00000527651.5:ENST00000532610.5:ENST00000532919.5:ENST00000530554.5	protein_coding	protein_coding	protein_coding	protein_coding	3	46	2	1.97143	2.46301	2.95459	0.0398704	0.00957623	0.161534	0.0820838
chr17	64512745	64512843	6661952	0	+	0.387755	(0.378,0.408]	chr17	650192	21	INTRON	INTRON	CEP95	ENSG00000258890.8	ENST00000579860.5:ENST00000580188.1:ENST00000556440.7:ENST00000581056.5:ENST00000553956.6:ENST00000582724.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	46	2	1.97143	2.46301	2.95459	0.0398704	0.00957623	0.161534	0.0820838
chr6	85633876	85633975	3151356	0	-	0.393939	(0.378,0.408]	chr6	293889	94	INTRON	INTRON	ENSG00000271793:SYNCRIP	ENSG00000271793.2:ENSG00000135316.19	ENST00000682083.1:ENST00000683074.1:ENST00000681965.1:ENST00000682504.1:ENST00000682106.1:ENST00000683364.1:ENST00000683436.1:ENST00000684220.1:ENST00000683909.1:ENST00000684462.1:ENST00000616122.5:ENST00000678528.1:ENST00000676637.1:ENST00000677771.1:ENST00000355238.11:ENST00000678878.1:ENST00000677481.1:ENST00000677646.1:ENST00000676630.1:ENST00000678618.1:ENST00000676542.1:ENST00000677059.1:ENST00000444272.2:ENST00000678899.1:ENST00000369622.8:ENST00000678355.1:ENST00000676688.1:ENST00000677514.1:ENST00000678816.1:ENST00000678930.1:ENST00000678589.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	46	2	1.97143	2.46301	2.95459	0.0398704	0.00957623	0.161534	0.0820838
chr2	10161152	10161252	691115	0	+	0.51	(0.476,0.515]	chr2	81109	50	INTRON	INTRON	RRM2	ENSG00000171848.16	ENST00000641498.1:ENST00000381786.7	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	3	48	2	2.38442	2.4629950000000003	2.54157	0.0417472	0.00697457	0.161736	0.0718189
chr14	35002393	35002490	5691236	0	+	0.371134	(0.35,0.378]	chr14	541261	10	INTRON	INTRON	SRP54	ENSG00000100883.13	ENST00000556994.5:ENST00000678836.1:ENST00000546080.6:ENST00000555746.6:ENST00000678963.1:ENST00000677561.1:ENST00000678477.1:ENST00000677621.1:ENST00000553923.2:ENST00000679045.1:ENST00000678519.1:ENST00000678627.1:ENST00000216774.11:ENST00000555557.5:ENST00000678274.1:ENST00000556380.3:ENST00000555535.1:ENST00000677647.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	58	2	2.20096	2.4629649999999996	2.72497	0.0198266	0.0087123	0.109608	0.0844834
chr11	68063428	68063527	4972005	0	-	0.464646	(0.44,0.476]	chr11	469379	10	INTRON	INTRON	CHKA	ENSG00000110721.12	ENST00000265689.9:ENST00000525155.5:ENST00000356135.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	44	2	2.00609	2.462795	2.9195	0.0360127	0.0102021	0.152355	0.0850389
chr19	11044626	11044725	7016445	0	+	0.464646	(0.44,0.476]	chr19	697359	27	INTRON	INTRON	SMARCA4	ENSG00000127616.20	ENST00000644737.1:ENST00000642726.1:ENST00000646484.1:ENST00000643549.1:ENST00000643296.1:ENST00000647230.1:ENST00000642628.1:ENST00000646510.1:ENST00000429416.8:ENST00000344626.10:ENST00000646693.2:ENST00000645460.1:ENST00000541122.6:ENST00000589677.5:ENST00000444061.8:ENST00000590574.6:ENST00000643995.1:ENST00000644327.1:ENST00000644065.1:ENST00000644963.1:ENST00000643208.1:ENST00000645061.1:ENST00000642350.1:ENST00000647268.1:ENST00000643857.1:ENST00000646183.1:ENST00000646746.1:ENST00000643534.1:ENST00000646593.1:ENST00000645648.1:ENST00000592604.6:ENST00000591595.5:ENST00000585799.5:ENST00000642508.1:ENST00000645236.1:ENST00000538456.4:ENST00000586985.2:ENST00000592158.2:ENST00000646889.1:ENST00000643929.1:ENST00000645387.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	44	2	2.00609	2.462795	2.9195	0.0360127	0.0102021	0.152355	0.0850389
chr22	49525378	49525478	7601333	0	-	0.44	(0.408,0.44]	chr22	778566	838	INTRON	INTRON	MIR3667HG	ENSG00000188511.13	ENST00000414287.5:ENST00000416411.1	lncRNA	lncRNA	lncRNA	lncRNA	19	249	2	1.95838	2.462795	2.96721	0.00165261	8.65029e-6	0.0369207	0.00211124
chr5	145795458	145795554	2746240	0	-	0.46875	(0.44,0.476]	chr5	258690	5	UTR3	UTR3:EXON_MRNA:INTRON	PRELID2	ENSG00000186314.12	ENST00000510594.1:ENST00000683046.1:ENST00000334744.8:ENST00000394450.6:ENST00000505416.5:ENST00000511435.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	44	2	2.00609	2.462795	2.9195	0.0360127	0.0102021	0.152355	0.0850389
chr14	101875830	101875930	5819654	0	+	0.42	(0.408,0.44]	chr14	551879	186	INTRON	INTRON	PPP2R5C	ENSG00000078304.20	ENST00000694906.1:ENST00000422945.6:ENST00000328724.9:ENST00000350249.7:ENST00000557621.5:ENST00000556307.5:ENST00000553730.5:ENST00000334743.9:ENST00000445439.7:ENST00000557095.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	55	2	1.96534	2.462705	2.96007	0.0216499	0.00753901	0.11491	0.0773151
chr6	15246684	15246784	2822951	0	+	0.41	(0.408,0.44]	chr6	265185	1	SS5_PROX	SS5_PROX:INTRON	JARID2	ENSG00000008083.14	ENST00000341776.7	protein_coding	protein_coding	protein_coding	protein_coding	4	61	2	1.94273	2.4626650000000003	2.9826	0.0456237	9.23082e-4	0.149888	0.0278392
chr16	21430313	21430412	6460617	0	-	0.515152	(0.476,0.515]	chr16	623218	45	INTRON	INTRON	NPIPB3	ENSG00000169246.16	ENST00000521589.5:ENST00000534903.1:ENST00000545358.5:ENST00000543368.1:ENST00000544154.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	20	256	2	2.05172	2.46266	2.8736	5.43632e-4	3.18255e-5	0.0211702	0.00471653
chr2	70214901	70214994	1152106	0	-	0.387097	(0.378,0.408]	chr2	123038	4	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	C2orf42:TIA1	ENSG00000115998.8:ENSG00000116001.17	ENST00000470096.1:ENST00000415783.6:ENST00000433529.7:ENST00000282574.8:ENST00000445587.5:ENST00000486392.5:ENST00000495774.1:ENST00000454815.6:ENST00000468787.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	63	2	1.5653	2.46264	3.35998	0.043739	0.00230615	0.162255	0.0428247
chr6	169715342	169715430	3267252	0	-	0.397727	(0.378,0.408]	chr6	303296	1	SS5_PROX	SS5_PROX:INTRON	PHF10	ENSG00000130024.15	ENST00000339209.9:ENST00000366780.8:ENST00000621772.4:ENST00000480008.1:ENST00000612128.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	63	2	1.5653	2.46264	3.35998	0.043739	0.00230615	0.162255	0.0428247
chr1	236233139	236233239	664660	0	-	0.48	(0.476,0.515]	chr1	78692	3	SS3_PROX	SS3_PROX:INTRON	ERO1B	ENSG00000086619.15	ENST00000354619.10:ENST00000687487.1	protein_coding	protein_coding	protein_coding	protein_coding	4	54	2	2.29359	2.4626349999999997	2.63168	0.0237106	0.00584957	0.118716	0.0689807
chr5	40796269	40796368	2611149	0	-	0.434343	(0.408,0.44]	chr5	248269	62	INTRON	INTRON	PRKAA1	ENSG00000132356.12	ENST00000397128.7:ENST00000354209.7:ENST00000506652.5:ENST00000509874.5:ENST00000296800.4:ENST00000511248.1:ENST00000397006.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	11	153	2	2.27926	2.462625	2.64599	9.96556e-4	3.63888e-4	0.0290732	0.0176829
chr5	60950127	60950227	2359269	0	+	0.34	(0.32,0.35]	chr5	227644	43	INTRON	INTRON	NDUFAF2	ENSG00000164182.12	ENST00000678452.1:ENST00000677756.1:ENST00000296597.10:ENST00000511107.1:ENST00000677932.1:ENST00000502658.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	95	2	2.05666	2.46251	2.86836	0.00840213	0.00250845	0.0824581	0.0446195
chr16	203515	203614	6425923	0	-	0.464646	(0.44,0.476]	chr16	617421	39	INTRON	INTRON	LUC7L	ENSG00000007392.17	ENST00000337351.8:ENST00000426094.5:ENST00000397783.5:ENST00000629543.2:ENST00000490762.5:ENST00000293872.13:ENST00000429378.5:ENST00000464711.5:ENST00000419516.5:ENST00000397780.5:ENST00000495349.5:ENST00000418978.5:ENST00000430864.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	108	2	2.36073	2.4624800000000002	2.56423	0.00226303	0.00108744	0.0425438	0.0301337
chr11	112059302	112059402	4865306	0	+	0.46	(0.44,0.476]	chr11	453960	63	INTRON	INTRON	DLAT	ENSG00000150768.17	ENST00000280346.11:ENST00000679878.1:ENST00000679815.1:ENST00000679614.1:ENST00000533297.1:ENST00000681339.1:ENST00000681328.1:ENST00000681316.1:ENST00000680010.1:ENST00000527231.2:ENST00000681638.1:ENST00000679368.1:ENST00000531306.2:ENST00000393051.5:ENST00000680331.1:ENST00000680411.1:ENST00000680154.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	44	2	1.83899	2.46245	3.08591	0.0589734	0.00481262	0.167915	0.0638089
chr5	95509293	95509393	2680512	0	-	0.45	(0.44,0.476]	chr5	253304	3	SS5_PROX	SS5_PROX:INTRON	TTC37	ENSG00000198677.12	ENST00000649566.1:ENST00000358746.7:ENST00000508181.5:ENST00000512026.5:ENST00000515176.5:ENST00000507805.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	44	2	1.83899	2.46245	3.08591	0.0589734	0.00481262	0.167915	0.0638089
chr15	66628898	66628998	6051250	0	+	0.31	(0.28,0.32]	chr15	576221	463	INTRON	INTRON	LINC01169	ENSG00000259471.1	ENST00000558797.1	lncRNA	lncRNA	lncRNA	lncRNA	4	75	2	2.36963	2.46242	2.55521	0.0157022	0.0067419	0.101453	0.0739405
chr2	55598415	55598504	1124928	0	-	0.348315	(0.32,0.35]	chr2	120668	1	CDS	CDS:EXON_MRNA	PPP4R3B	ENSG00000275052.5	ENST00000616407.2:ENST00000611717.4:ENST00000616288.4	protein_coding	protein_coding	protein_coding	protein_coding	7	85	2	1.50457	2.462415	3.42026	0.0309203	0.00219805	0.143443	0.0417893
chr4	25265945	25266045	1933224	0	+	0.32	(0.28,0.32]	chr4	194086	17	INTRON	INTRON	PI4K2B	ENSG00000038210.14	ENST00000512921.4:ENST00000264864.8	protein_coding	protein_coding	protein_coding	protein_coding	4	67	2	1.76378	2.462395	3.16101	0.0395495	0.0061861	0.161534	0.0677395
chr16	18846685	18846774	6457254	0	-	0.404494	(0.378,0.408]	chr16	622695	7	INTRON	INTRON	SMG1	ENSG00000157106.18	ENST00000446231.7:ENST00000565324.5:ENST00000563448.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	87	2	2.35103	2.46227	2.57351	0.014158	7.32287e-4	0.0959618	0.0246502
chr1	42945419	42945519	433009	0	-	0.42	(0.408,0.44]	chr1	52495	17	INTRON	INTRON	SLC2A1	ENSG00000117394.24	ENST00000426263.10:ENST00000630287.2:ENST00000675112.1:ENST00000674765.1:ENST00000625233.2:ENST00000372500.4:ENST00000415851.6:ENST00000630821.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	53	2	2.08376	2.462265	2.84077	0.0132196	0.0129886	0.0991656	0.0940535
chr11	5366296	5366396	4896882	0	-	0.52	(0.515,0.57]	chr11	459187	190	INTRON	INTRON	HBG2:ENSG00000239920:HBE1:OR51B5	ENSG00000196565.15:ENSG00000239920.2:ENSG00000213931.7:ENSG00000167355.8	ENST00000380252.6:ENST00000380259.7:ENST00000292896.3:ENST00000380237.5:ENST00000420726.6:ENST00000420465.6:ENST00000415970.6:ENST00000418729.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:nonsense_mediated_decay:processed_transcript	4	46	2	1.8661	2.4622450000000002	3.05839	0.0274846	0.00485936	0.123904	0.0640618
chrX	101100345	101100436	7694152	0	+	0.340659	(0.32,0.35]	chrX	787332	3	SS5_PROX	SS5_PROX:INTRON	CENPI	ENSG00000102384.14	ENST00000684367.1:ENST00000423383.3:ENST00000682095.1:ENST00000682304.1:ENST00000403304.6:ENST00000435570.1	protein_coding	protein_coding	protein_coding	protein_coding	4	62	2	1.69107	2.46219	3.23331	0.0517392	0.00315414	0.159306	0.0515261
chr11	47521254	47521354	4950082	0	-	0.21	[0,0.28]	chr11	464238	65	INTRON	INTRON	CELF1	ENSG00000149187.19	ENST00000310513.10:ENST00000687097.1:ENST00000531165.5:ENST00000532048.5:ENST00000530151.5:ENST00000525841.5:ENST00000528434.5:ENST00000543178.5:ENST00000526419.1:ENST00000528538.5:ENST00000526277.1	protein_coding	protein_coding	protein_coding	protein_coding	4	76	2	2.06426	2.46217	2.86008	0.0177015	0.0168952	0.110899	0.105304
chr22	21509441	21509541	7560185	0	-	0.45	(0.44,0.476]	chr22	773318	170	INTRON	INTRON	PI4KAP2	ENSG00000183506.17	ENST00000450651.5:ENST00000467443.5:ENST00000479693.1:ENST00000476537.1:ENST00000491562.5	transcribed_unitary_pseudogene	retained_intron	transcribed_unitary_pseudogene	retained_intron:processed_transcript	5	60	2	1.70242	2.46217	3.22192	0.0282713	0.00360821	0.137721	0.0533855
chr21	44794891	44794991	7468662	0	-	0.38	(0.378,0.408]	chr21	761177	64	INTRON	INTRON	UBE2G2	ENSG00000184787.19	ENST00000345496.7:ENST00000497630.5:ENST00000477954.5:ENST00000491513.5:ENST00000330942.9:ENST00000478200.1:ENST00000497664.5:ENST00000462569.5:ENST00000490450.5:ENST00000496395.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	47	2	2.21238	2.462105	2.71183	0.0218124	0.0170789	0.11491	0.110899
chr9	122848929	122849029	4338038	0	-	0.3	(0.28,0.32]	chr9	398679	45	UTR3	UTR3:EXON_MRNA	RC3H2	ENSG00000056586.16	ENST00000357244.7:ENST00000373670.5:ENST00000498479.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	42	2	2.29724	2.46205	2.62686	0.0554156	0.0289217	0.18407	0.1274
chr3	196068792	196068873	1897413	0	-	0.592593	(0.57,1]	chr3	189951	3	INTRON	INTRON	TFRC	ENSG00000072274.13	ENST00000420415.5:ENST00000360110.9:ENST00000392396.7:ENST00000491658.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	63	2	2.18911	2.4620499999999996	2.73499	0.00237434	5.03722e-4	0.0438057	0.0202328
chr17	59921054	59921154	6644051	0	+	0.39	(0.378,0.408]	chr17	648827	60	INTRON	INTRON	RPS6KB1	ENSG00000108443.14	ENST00000393021.7:ENST00000472940.5:ENST00000225577.9:ENST00000443572.6:ENST00000489824.1:ENST00000406116.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	34	2	2.13703	2.46204	2.78705	0.0797592	0.0135539	0.19979	0.101363
chr11	46564141	46564241	4946961	0	-	0.26	[0,0.28]	chr11	463525	147	INTRON	INTRON	AMBRA1	ENSG00000110497.15	ENST00000683756.1:ENST00000534300.5:ENST00000533727.5:ENST00000314845.7:ENST00000458649.6:ENST00000528950.1:ENST00000531542.1:ENST00000526606.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	76	2	1.84046	2.46203	3.0836	0.0335889	0.00940284	0.146709	0.0817766
chr12	121895041	121895141	5238243	0	+	0.52	(0.515,0.57]	chr12	497277	2	SS5_PROX	SS5_PROX:INTRON	PSMD9	ENSG00000110801.14	ENST00000537407.5:ENST00000540962.5:ENST00000261817.6:ENST00000538613.5:ENST00000542602.1:ENST00000541212.6:ENST00000543699.5:ENST00000535293.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	54	2	2.16051	2.4620249999999997	2.76354	0.0147344	0.0046825	0.0983813	0.0631419
chr3	172041024	172041124	1559557	0	+	0.37	(0.35,0.378]	chr3	161522	4	SS5_PROX	SS5_PROX:INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000421757.5:ENST00000469491.5:ENST00000336824.8:ENST00000423424.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	59	2	2.32061	2.46201	2.60341	0.0275785	0.00545884	0.123904	0.0669938
chr6	7130560	7130660	2798591	0	+	0.41	(0.408,0.44]	chr6	263723	215	INTRON	INTRON	RREB1	ENSG00000124782.21	ENST00000379933.7:ENST00000491191.5:ENST00000471433.5:ENST00000379938.7:ENST00000467782.5:ENST00000349384.10:ENST00000334984.10:ENST00000475946.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	53	2	1.81759	2.4619999999999997	3.10641	0.0316273	0.00555646	0.144405	0.0648867
chr11	66622026	66622124	4810853	0	+	0.510204	(0.476,0.515]	chr11	447861	7	INTRON	INTRON	RBM14-RBM4:RBM14	ENSG00000248643.5:ENSG00000239306.5	ENST00000412278.2:ENST00000393979.3:ENST00000511114.1:ENST00000310137.5:ENST00000409372.1:ENST00000421355.1:ENST00000443702.1:ENST00000500635.2:ENST00000409738.4:ENST00000461478.1:ENST00000496694.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	98	2	2.36512	2.46198	2.55884	0.00246559	0.00186081	0.0446195	0.039946
chr7	1435647	1435746	3462024	0	-	0.606061	(0.57,1]	chr7	323655	1	INTRON	INTRON	MICALL2	ENSG00000164877.19	ENST00000493998.1:ENST00000496184.1:ENST00000472100.5:ENST00000297508.8:ENST00000467783.1:ENST00000467394.5:ENST00000413446.5:ENST00000479007.5:ENST00000471899.5:ENST00000470807.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	47	2	1.99245	2.4619750000000002	2.9315	0.00568465	9.1984e-4	0.0678837	0.0278396
chr10	96558558	96558658	4674143	0	-	0.52	(0.515,0.57]	chr10	430703	51	INTRON	INTRON	TM9SF3	ENSG00000077147.16	ENST00000371142.9:ENST00000649367.1:ENST00000443638.1:ENST00000464654.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	99	2	1.90463	2.461975	3.01932	0.0141753	4.42021e-5	0.0959618	0.0053901
chr5	32421898	32421998	2599100	0	-	0.31	(0.28,0.32]	chr5	246966	14	INTRON	INTRON	ZFR	ENSG00000056097.16	ENST00000265069.13:ENST00000505366.1:ENST00000505204.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	57	2	2.32871	2.461875	2.59504	0.0581621	0.00582473	0.167723	0.0687439
chr12	110399740	110399839	5409159	0	-	0.545455	(0.515,0.57]	chr12	516463	29	INTRON	INTRON	ANAPC7:ENSG00000258210	ENSG00000196510.14:ENSG00000258210.1	ENST00000455511.9:ENST00000450008.3:ENST00000552170.2:ENST00000550231.1:ENST00000464697.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay	8	97	2	2.27709	2.461855	2.64662	0.00275782	5.1273e-4	0.0486216	0.0208667
chr1	1521398	1521492	1950	0	+	0.585106	(0.57,1]	chr1	477	4	INTRON	INTRON	ATAD3A	ENSG00000197785.14	ENST00000378756.8:ENST00000672388.1:ENST00000378755.9:ENST00000339113.9:ENST00000536055.6:ENST00000429957.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	45	2	2.44356	2.461745	2.47993	0.007207	0.00109465	0.0756278	0.0304174
chr16	313049	313148	6426459	0	-	0.525253	(0.515,0.57]	chr16	617494	26	INTRON	INTRON	AXIN1	ENSG00000103126.15	ENST00000262320.8:ENST00000461023.5:ENST00000354866.7:ENST00000481769.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	11	124	2	2.04462	2.4617050000000003	2.87879	0.00235401	1.06927e-4	0.0436213	0.00876441
chr16	30332579	30332679	6473343	0	-	0.49	(0.476,0.515]	chr16	625713	263	INTRON	INTRON	SMG1P5	ENSG00000183604.15	ENST00000529428.5:ENST00000411546.4:ENST00000691460.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	8	98	2	1.65322	2.46163	3.27004	0.0190363	2.20887e-4	0.108861	0.0130309
chr22	19095279	19095379	7551743	0	-	0.44	(0.408,0.44]	chr22	771903	54	INTRON	INTRON	DGCR2	ENSG00000070413.20	ENST00000537045.5:ENST00000545799.5:ENST00000263196.12:ENST00000389262.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	91	2	1.76523	2.46161	3.15799	0.0174785	3.8998e-4	0.10482	0.0177751
chr1	211260828	211260928	305710	0	+	0.59	(0.57,1]	chr1	35236	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	RCOR3	ENSG00000117625.14	ENST00000534478.5:ENST00000533469.5:ENST00000367006.8:ENST00000419091.7:ENST00000452621.6:ENST00000528926.5:ENST00000528408.5:ENST00000472734.1:ENST00000529572.5:ENST00000367005.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	48	2	2.26008	2.4615650000000002	2.66305	0.00327879	0.0014773	0.0509077	0.0353237
chr1	8651073	8651173	372114	0	-	0.39	(0.378,0.408]	chr1	43533	263	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000400907.6:ENST00000656437.1:ENST00000659924.1:ENST00000480342.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	34	2	2.45932	2.461525	2.46373	0.0382831	0.0346754	0.148144	0.141795
chr15	37017632	37017731	6143231	0	-	0.40404	(0.378,0.408]	chr15	584824	669	INTRON	INTRON	MEIS2	ENSG00000134138.20	ENST00000338564.9:ENST00000561208.6:ENST00000397624.7:ENST00000340545.9:ENST00000314177.12:ENST00000560570.5:ENST00000559085.5:ENST00000557796.6:ENST00000397620.6:ENST00000424352.6:ENST00000559561.5:ENST00000607277.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	34	2	2.45932	2.461525	2.46373	0.0382831	0.0346754	0.148144	0.141795
chr7	974506	974606	3460410	0	-	0.4	(0.378,0.408]	chr7	323546	2	SS5_PROX	SS5_PROX:INTRON	COX19	ENSG00000240230.6	ENST00000457254.5:ENST00000344111.4:ENST00000466146.1:ENST00000466853.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	34	2	2.45932	2.461525	2.46373	0.0382831	0.0346754	0.148144	0.141795
chr16	11737821	11737920	6445152	0	-	0.414141	(0.408,0.44]	chr16	620837	12	INTRON	INTRON	TXNDC11	ENSG00000153066.13	ENST00000283033.10:ENST00000356957.7:ENST00000576969.5:ENST00000573174.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	79	2	1.36246	2.461515	3.56057	0.0386802	9.67143e-4	0.159946	0.0282401
chr6	57106648	57106747	2878224	0	+	0.363636	(0.35,0.378]	chr6	273248	47	UTR3	UTR3:EXON_MRNA:INTRON	ZNF451	ENSG00000112200.17	ENST00000515290.5:ENST00000510483.5:ENST00000357489.7:ENST00000370708.8:ENST00000370702.5:ENST00000444273.6:ENST00000370711.9:ENST00000370706.9:ENST00000491832.6:ENST00000502749.1:ENST00000504603.1:ENST00000509071.5:ENST00000509251.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	58	2	1.70607	2.46142	3.21677	0.0482819	0.00313804	0.153283	0.0514466
chr17	8381497	8381592	6720396	0	-	0.484211	(0.476,0.515]	chr17	659452	1	SS5_PROX	SS5_PROX:INTRON	RPL26	ENSG00000161970.15	ENST00000648839.1:ENST00000584164.6:ENST00000584906.6:ENST00000583011.6:ENST00000582485.5:ENST00000582556.5:ENST00000585176.1:ENST00000584343.6:ENST00000578812.5:ENST00000583515.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	68	2	1.52278	2.461405	3.40003	0.0384487	0.00139193	0.142348	0.0341261
chr1	32327977	32328077	65083	0	+	0.42	(0.408,0.44]	chr1	8344	3	SS5_PROX	SS5_PROX:INTRON	HDAC1	ENSG00000116478.12	ENST00000373548.8:ENST00000428704.1:ENST00000490081.5:ENST00000482310.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	15	166	2	1.70517	2.461355	3.21754	0.00411851	9.60055e-5	0.0586197	0.00877604
chr16	69323903	69324003	6507716	0	-	0.43	(0.408,0.44]	chr16	630028	2	SS3_PROX	SS3_PROX:INTRON	COG8	ENSG00000213380.16	ENST00000564419.1:ENST00000562595.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	147	2	2.02926	2.4613199999999997	2.89338	0.00323143	1.20672e-4	0.0507087	0.00938389
chr5	140670451	140670551	2504638	0	+	0.49	(0.476,0.515]	chr5	239541	9	UTR3	UTR3:EXON_MRNA:INTRON	WDR55	ENSG00000120314.19	ENST00000506393.5:ENST00000358337.10:ENST00000511232.5:ENST00000504897.2:ENST00000520764.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	126	2	2.39882	2.46131	2.5238	0.00218334	7.3251e-4	0.0435144	0.0248885
chr8	23567005	23567102	3715481	0	+	0.453608	(0.44,0.476]	chr8	345233	3	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	SLC25A37	ENSG00000147454.14	ENST00000519973.6:ENST00000290075.10:ENST00000417331.6:ENST00000518881.5:ENST00000520654.1:ENST00000523930.1:ENST00000523883.5:ENST00000522164.5:ENST00000521637.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	85	1098	2	2.24584	2.461305	2.67677	1.45029e-5	3.3967e-6	0.0028542	0.00131232
chr12	55821791	55821883	5332842	0	-	0.434783	(0.408,0.44]	chr12	509175	10	UTR3	UTR3:EXON_MRNA	DNAJC14	ENSG00000135392.19	ENST00000357606.7:ENST00000678005.2:ENST00000547445.2:ENST00000546957.2:ENST00000317287.5	protein_coding	protein_coding	protein_coding	protein_coding	8	114	2	2.35743	2.461215	2.565	0.00206746	0.00103673	0.0421756	0.0292734
chr5	141985532	141985632	2505472	0	+	0.48	(0.476,0.515]	chr5	239810	2	INTRON	INTRON	RNF14	ENSG00000013561.18	ENST00000394519.5:ENST00000356143.5:ENST00000347642.7:ENST00000394520.7:ENST00000394514.6	protein_coding	protein_coding	protein_coding	protein_coding	4	60	2	1.99197	2.461215	2.93046	0.039572	0.00118985	0.143072	0.031662
chr10	21564102	21564201	4404713	0	+	0.434343	(0.408,0.44]	chr10	406446	59	INTRON	INTRON	MLLT10	ENSG00000078403.17	ENST00000651097.1:ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000650772.1:ENST00000651298.1:ENST00000495130.5:ENST00000377059.7:ENST00000476557.5:ENST00000462999.5:ENST00000430455.2:ENST00000479634.1:ENST00000480415.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	54	2	1.83501	2.461195	3.08738	0.0323448	0.00478231	0.133003	0.0636201
chr9	99135788	99135886	4175747	0	+	0.285714	(0.28,0.32]	chr9	380673	27	INTRON	INTRON	TGFBR1	ENSG00000106799.13	ENST00000374990.6:ENST00000374994.9:ENST00000552516.5:ENST00000549766.5:ENST00000549021.5:ENST00000550253.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	57	2	1.83771	2.4611650000000003	3.08462	0.0591725	0.0078976	0.189982	0.076155
chr5	109358496	109358595	2701850	0	-	0.59596	(0.57,1]	chr5	254328	21	INTRON	INTRON	PJA2	ENSG00000198961.10	ENST00000361557.4:ENST00000361189.7	protein_coding	protein_coding	protein_coding	protein_coding	7	51	2	2.00566	2.46116	2.91666	0.00889324	2.13552e-4	0.0798039	0.0128246
chr7	74878482	74878581	3556635	0	-	0.353535	(0.35,0.378]	chr7	331156	97	INTRON	INTRON	STAG3L2	ENSG00000277072.5	ENST00000651031.1:ENST00000650988.1:ENST00000652688.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	9	136	2	2.3486	2.461095	2.57359	0.00126135	0.00116092	0.0329641	0.0311846
chr19	4418775	4418875	7001925	0	+	0.48	(0.476,0.515]	chr19	694529	3	INTRON	INTRON	CHAF1A	ENSG00000167670.16	ENST00000301280.10:ENST00000587739.1:ENST00000585371.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	117	2	2.14785	2.4610250000000002	2.7742	0.00197135	8.54322e-4	0.0411469	0.0267428
chr17	81592757	81592855	6849149	0	-	0.520408	(0.515,0.57]	chr17	678168	33	INTRON	INTRON	NPLOC4	ENSG00000182446.14	ENST00000331134.11:ENST00000374747.9:ENST00000574897.5:ENST00000572351.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	61	2	2.38476	2.460905	2.53705	0.0110593	0.00186194	0.0873897	0.039946
chr7	106275849	106275947	3608519	0	-	0.520408	(0.515,0.57]	chr7	336538	9	EXON_MRNA	EXON_MRNA:INTRON	NAMPT	ENSG00000105835.13	ENST00000681491.1:ENST00000222553.8:ENST00000681494.1:ENST00000680708.1:ENST00000681653.1:ENST00000681391.1:ENST00000680991.1:ENST00000680077.1:ENST00000681456.1:ENST00000680675.1:ENST00000681550.1:ENST00000680864.1:ENST00000680584.1:ENST00000680669.1:ENST00000424768.2:ENST00000681255.1:ENST00000679873.1:ENST00000679643.1:ENST00000681878.1:ENST00000489732.2:ENST00000679951.1:ENST00000680823.1:ENST00000680468.1:ENST00000681936.1:ENST00000680152.1:ENST00000681887.1:ENST00000680129.1:ENST00000680786.1:ENST00000681223.1:ENST00000679717.1:ENST00000484527.6:ENST00000354289.9:ENST00000491027.6:ENST00000393618.6:ENST00000489358.5:ENST00000441045.6:ENST00000417537.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	61	2	2.38476	2.460905	2.53705	0.0110593	0.00186194	0.0873897	0.039946
chr2	39271289	39271388	1102603	0	-	0.353535	(0.35,0.378]	chr2	118355	37	INTRON	INTRON	MAP4K3	ENSG00000011566.15	ENST00000263881.8:ENST00000437545.5:ENST00000341681.9	protein_coding	protein_coding	protein_coding	protein_coding	5	67	2	2.0847	2.460895	2.83709	0.01435	0.00719316	0.0966737	0.0756118
chr3	37259561	37259661	1395917	0	+	0.38	(0.378,0.408]	chr3	146319	77	INTRON	INTRON	GOLGA4	ENSG00000144674.17	ENST00000435830.6:ENST00000444882.5:ENST00000356847.8:ENST00000450863.6:ENST00000361924.7:ENST00000429018.5:ENST00000431105.1:ENST00000419177.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	157	2	2.25517	2.460885	2.6666	0.00430492	6.90975e-5	0.0577899	0.00688956
chr21	37388598	37388698	7406440	0	+	0.42	(0.408,0.44]	chr21	754850	131	INTRON	INTRON	DYRK1A	ENSG00000157540.22	ENST00000646523.1:ENST00000647425.1:ENST00000647188.2:ENST00000647504.1:ENST00000644942.1:ENST00000338785.8:ENST00000643624.1:ENST00000643551.1:ENST00000426672.6:ENST00000398960.7	protein_coding	protein_coding	protein_coding	protein_coding	15	204	2	2.11899	2.4608800000000004	2.80277	0.00160962	2.66677e-5	0.0365584	0.00407562
chr3	37285121	37285219	1396176	0	+	0.336735	(0.32,0.35]	chr3	146339	25	INTRON	INTRON	GOLGA4	ENSG00000144674.17	ENST00000435830.6:ENST00000444882.5:ENST00000356847.8:ENST00000450863.6:ENST00000361924.7:ENST00000429018.5:ENST00000419177.3:ENST00000437131.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	96	2	1.60939	2.46084	3.31229	0.0439266	2.2038e-4	0.14937	0.0130276
chr6	31541261	31541327	3078839	0	-	0.530303	(0.515,0.57]	chr6	286771	2	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	DDX39B	ENSG00000198563.14	ENST00000458640.5:ENST00000462256.5:ENST00000396172.6:ENST00000482195.5:ENST00000431908.5:ENST00000481456.1:ENST00000427214.5:ENST00000428098.5:ENST00000419338.5:ENST00000456662.5:ENST00000428450.5:ENST00000449757.5:ENST00000456976.5:ENST00000418897.5:ENST00000419020.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	24	275	2	2.22881	2.4607900000000003	2.69277	1.35212e-4	1.45517e-5	0.0100405	0.00305687
chr4	82888205	82888305	2180080	0	-	0.53	(0.515,0.57]	chr4	214408	59	INTRON	INTRON	SEC31A	ENSG00000138674.17	ENST00000395310.7:ENST00000513858.5:ENST00000348405.8:ENST00000448323.5:ENST00000311785.11:ENST00000509142.5:ENST00000443462.6:ENST00000355196.6:ENST00000508502.5:ENST00000505984.5:ENST00000508479.5:ENST00000436790.6:ENST00000503058.5:ENST00000507816.5:ENST00000514326.5:ENST00000513323.5:ENST00000511975.5:ENST00000507340.5:ENST00000507867.5:ENST00000506497.5:ENST00000510310.1:ENST00000503210.5:ENST00000505434.5:ENST00000507676.5:ENST00000506495.5:ENST00000507051.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	77	2	1.75695	2.46075	3.16455	0.016156	3.23741e-4	0.101453	0.0159645
chr19	54104063	54104157	7098519	0	+	0.510638	(0.476,0.515]	chr19	711798	5	INTRON	INTRON	NDUFA3	ENSG00000170906.16	ENST00000417903.5:ENST00000419113.5:ENST00000391762.5:ENST00000485876.6:ENST00000451517.5:ENST00000471292.5:ENST00000391764.7:ENST00000391763.3:ENST00000484103.1:ENST00000303553.5:ENST00000422029.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	60	2	2.26034	2.46073	2.66112	0.0166235	0.0044598	0.110511	0.0592169
chr16	22320413	22320510	6321778	0	+	0.505155	(0.476,0.515]	chr16	605260	11	INTRON	INTRON	POLR3E	ENSG00000058600.16	ENST00000615879.4:ENST00000299853.10:ENST00000564209.5:ENST00000418581.6:ENST00000359210.8:ENST00000564061.5:ENST00000564750.5:ENST00000569757.1:ENST00000569787.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	71	2	1.78749	2.46069	3.13389	0.0157618	0.00405473	0.101453	0.0578376
chr10	74617590	74617690	4460446	0	+	0.53	(0.515,0.57]	chr10	411605	167	INTRON	INTRON	ADK	ENSG00000156110.15	ENST00000672429.1:ENST00000539909.6:ENST00000286621.7:ENST00000673352.1:ENST00000673310.1:ENST00000672920.1:ENST00000672394.1:ENST00000372734.5:ENST00000673027.1:ENST00000541550.6:ENST00000672604.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	61	2	2.11724	2.4606199999999996	2.804	0.0110335	0.00215855	0.0927187	0.0417866
chr10	68764987	68765087	4442726	0	+	0.31	(0.28,0.32]	chr10	409684	34	INTRON	INTRON	CCAR1	ENSG00000060339.14	ENST00000630771.2:ENST00000543719.5:ENST00000541012.5:ENST00000265872.11:ENST00000539539.5:ENST00000543229.5:ENST00000536012.5:ENST00000543225.5:ENST00000540210.5:ENST00000479143.2:ENST00000543706.1:ENST00000539250.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	76	2	2.00989	2.460565	2.91124	0.0427801	0.00165124	0.148082	0.0375241
chr12	110398246	110398346	5409144	0	-	0.47	(0.44,0.476]	chr12	516463	14	INTRON	INTRON	ANAPC7:ENSG00000258210	ENSG00000196510.14:ENSG00000258210.1	ENST00000455511.9:ENST00000450008.3:ENST00000552170.2:ENST00000550231.1:ENST00000464697.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay	8	108	2	1.95743	2.46055	2.96367	0.00839972	2.39417e-4	0.0775646	0.0136403
chr21	6326172	6326271	7364835	0	+	0.353535	(0.35,0.378]	chr21	751664	17	INTRON	INTRON	ENSG00000278903	ENSG00000278903.4	ENST00000688458.1:ENST00000689306.1:ENST00000692898.1:ENST00000624576.3:ENST00000623738.3:ENST00000692237.1:ENST00000692046.1:ENST00000689354.1:ENST00000624165.1	lncRNA	lncRNA	lncRNA	lncRNA	7	100	2	1.74831	2.4604749999999997	3.17264	0.0169142	6.16722e-4	0.110899	0.0229036
chr6	4840106	4840206	2791500	0	+	0.35	(0.32,0.35]	chr6	263602	34	INTRON	INTRON	CDYL	ENSG00000153046.18	ENST00000328908.9:ENST00000491864.1:ENST00000440139.5:ENST00000483019.1:ENST00000397588.8:ENST00000472453.5:ENST00000449732.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	83	2	2.22655	2.46038	2.69421	0.00823133	0.00484681	0.0812969	0.0605691
chr10	28532111	28532206	4587198	0	-	0.547368	(0.515,0.57]	chr10	422940	5	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	WAC-AS1	ENSG00000254635.6	ENST00000527986.5:ENST00000528337.2:ENST00000664327.1	lncRNA	lncRNA	lncRNA	lncRNA	2	29	2	2.23241	2.46037	2.68833	0.0581268	0.0184931	0.188651	0.108861
chr12	104302575	104302675	5210166	0	+	0.56	(0.515,0.57]	chr12	493210	111	INTRON	INTRON	TXNRD1	ENSG00000198431.17	ENST00000525566.6:ENST00000526266.5:ENST00000503506.6:ENST00000526691.5:ENST00000531691.5:ENST00000526390.5:ENST00000531689.5:ENST00000529546.5:ENST00000529751.1:ENST00000528079.6:ENST00000526580.5:ENST00000529784.5:ENST00000524698.5:ENST00000527688.5:ENST00000527335.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	29	2	2.23241	2.46037	2.68833	0.0581268	0.0184931	0.188651	0.108861
chr5	74757553	74757652	2642244	0	-	0.525253	(0.515,0.57]	chr5	251180	57	INTRON	INTRON	GFM2	ENSG00000164347.18	ENST00000345239.6:ENST00000296805.8:ENST00000509430.5:ENST00000427854.6:ENST00000509097.1:ENST00000506778.1	protein_coding	protein_coding	protein_coding	protein_coding	2	29	2	2.23241	2.46037	2.68833	0.0581268	0.0184931	0.188651	0.108861
chr6	43429395	43429490	2870374	0	+	0.536842	(0.515,0.57]	chr6	272020	9	INTRON	INTRON	ABCC10	ENSG00000124574.15	ENST00000372515.8:ENST00000372530.9:ENST00000502549.1:ENST00000443426.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	29	2	2.23241	2.46037	2.68833	0.0581268	0.0184931	0.188651	0.108861
chr9	136444475	136444551	4374618	0	-	0.460526	(0.44,0.476]	chr9	402948	2	INTRON	INTRON	SEC16A	ENSG00000148396.19	ENST00000290037.10:ENST00000313050.11:ENST00000371706.8:ENST00000453963.5:ENST00000277537.10:ENST00000313084.9:ENST00000684901.1:ENST00000689049.1:ENST00000689439.1:ENST00000688461.1:ENST00000688052.1:ENST00000690691.1:ENST00000431893.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	146	2	1.75768	2.460315	3.16295	0.0101204	2.29402e-5	0.0850389	0.00373386
chr20	483760	483860	7303348	0	-	0.29	(0.28,0.32]	chr20	743483	51	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	CSNK2A1	ENSG00000101266.19	ENST00000646561.1:ENST00000217244.9:ENST00000643660.1:ENST00000645623.1:ENST00000619801.5:ENST00000400227.8:ENST00000349736.10:ENST00000644170.1:ENST00000643700.1:ENST00000645910.1:ENST00000645840.1:ENST00000646305.1:ENST00000645260.1:ENST00000642689.1:ENST00000645234.1:ENST00000646814.1:ENST00000646477.1:ENST00000644885.1:ENST00000642673.1:ENST00000643641.1:ENST00000644448.1:ENST00000644710.1:ENST00000643980.1:ENST00000647155.1:ENST00000645334.1:ENST00000645768.1:ENST00000644003.1:ENST00000645249.1:ENST00000647026.1:ENST00000400217.7:ENST00000647348.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	144	2	1.6762	2.460305	3.24441	0.0113403	6.28233e-4	0.0950029	0.023031
chr3	15048676	15048775	1372808	0	+	0.363636	(0.35,0.378]	chr3	144690	58	UTR3	UTR3:EXON_MRNA:INTRON	NR2C2	ENSG00000177463.16	ENST00000425241.6:ENST00000617312.4:ENST00000439011.5:ENST00000413194.1	protein_coding	protein_coding	protein_coding	protein_coding	4	65	2	2.04224	2.4602950000000003	2.87835	0.0363073	0.00160563	0.138959	0.0367961
chr17	30848987	30849086	6590599	0	+	0.515152	(0.476,0.515]	chr17	640948	37	INTRON	INTRON	ATAD5	ENSG00000176208.9	ENST00000321990.5:ENST00000578295.5:ENST00000585133.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:non_stop_decay	3	45	2	2.26789	2.460285	2.65268	0.0201975	0.0176567	0.121243	0.105233
chr20	35705430	35705530	7336164	0	-	0.43	(0.408,0.44]	chr20	747399	1	SS3_PROX	SS3_PROX:INTRON	RBM39	ENSG00000131051.24	ENST00000253363.11:ENST00000639702.1:ENST00000656873.1:ENST00000463004.5:ENST00000361162.10:ENST00000461283.5:ENST00000403542.6:ENST00000338163.10:ENST00000528062.7:ENST00000429968.5:ENST00000444878.5:ENST00000665058.1:ENST00000476806.5:ENST00000495293.5:ENST00000492779.5:ENST00000482563.1:ENST00000496183.5:ENST00000465158.5:ENST00000448303.5:ENST00000470563.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	44	2	2.33431	2.460275	2.58624	0.0273686	0.0129219	0.123904	0.0990564
chr6	147673182	147673282	2990727	0	+	0.39	(0.378,0.408]	chr6	280159	120	INTRON	INTRON	ENSG00000227681	ENSG00000227681.5	ENST00000427015.1:ENST00000432506.5	lncRNA	lncRNA	lncRNA	lncRNA	11	157	2	2.30359	2.460275	2.61696	0.00134494	2.8309e-4	0.0336321	0.01504
chr2	11283242	11283342	1068060	0	-	0.56	(0.515,0.57]	chr2	114079	331	INTRON	INTRON	ROCK2	ENSG00000134318.15	ENST00000315872.11:ENST00000261535.7:ENST00000431087.1:ENST00000462366.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	40	2	2.23915	2.460235	2.68132	0.0596178	0.00324198	0.16883600000000001	0.0524329
chr17	56911506	56911604	6799122	0	-	0.469388	(0.44,0.476]	chr17	671279	26	INTRON	INTRON	TRIM25	ENSG00000121060.19	ENST00000648772.1:ENST00000682766.1:ENST00000316881.9:ENST00000537230.3:ENST00000572021.6:ENST00000574997.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	81	2	2.00793	2.4602250000000003	2.91252	0.00937685	0.00164027	0.0859966	0.0369207
chr19	1591385	1591484	7112511	0	-	0.575758	(0.57,1]	chr19	714541	52	INTRON	INTRON	MBD3:ENSG00000267059	ENSG00000071655.18:ENSG00000267059.2	ENST00000434436.8:ENST00000156825.5:ENST00000585937.1:ENST00000585967.5:ENST00000592965.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	39	2	2.00153	2.46021	2.91889	0.00719009	0.00529543	0.0756118	0.063668
chr6	110813447	110813544	3190438	0	-	0.298969	(0.28,0.32]	chr6	297128	4	EXON_LNCRNA	EXON_LNCRNA:INTRON	CDK19	ENSG00000155111.15	ENST00000323817.7:ENST00000368911.8:ENST00000413605.6:ENST00000457688.5:ENST00000460913.1:ENST00000497709.1:ENST00000468997.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	55	2	2.24061	2.4601800000000003	2.67975	0.0252505	0.0194267	0.12011	0.119831
chr7	151478507	151478606	3674509	0	-	0.313131	(0.28,0.32]	chr7	341189	7	INTRON	INTRON	RHEB	ENSG00000106615.10	ENST00000262187.10:ENST00000472642.5:ENST00000478470.5:ENST00000496004.5:ENST00000470370.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	55	2	2.24061	2.4601800000000003	2.67975	0.0252505	0.0194267	0.12011	0.119831
chr2	235572027	235572127	1042117	0	+	0.44	(0.408,0.44]	chr2	111222	471	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1:ENST00000402604.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	44	2	2.07919	2.45998	2.84077	0.0291499	0.0132196	0.14147	0.0940535
chr1	19597733	19597833	40399	0	+	0.39	(0.378,0.408]	chr1	4738	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	MICOS10	ENSG00000173436.15	ENST00000648702.1:ENST00000617872.4:ENST00000322753.7:ENST00000486890.5:ENST00000498067.1:ENST00000462646.5:ENST00000467029.5:ENST00000481464.5:ENST00000498642.5:ENST00000479642.1:ENST00000485362.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	56	2	1.86598	2.459955	3.05393	0.0300232	0.00551532	0.129138	0.0672816
chr21	45515152	45515236	7469611	0	-	0.392857	(0.378,0.408]	chr21	761347	1	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SLC19A1	ENSG00000173638.19	ENST00000417954.5:ENST00000567670.5:ENST00000311124.9:ENST00000460174.1:ENST00000650808.1:ENST00000380010.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	56	2	1.86598	2.459955	3.05393	0.0300232	0.00551532	0.129138	0.0672816
chr17	31939490	31939588	6595700	0	+	0.377551	(0.35,0.378]	chr17	641540	16	INTRON	INTRON	SUZ12	ENSG00000178691.11	ENST00000322652.10:ENST00000580398.1	protein_coding	protein_coding	protein_coding	protein_coding	7	108	2	2.20121	2.45984	2.71847	0.0104157	3.66214e-4	0.085482	0.0171615
chr16	16518012	16518112	6311042	0	+	0.34	(0.32,0.35]	chr16	604098	180	INTRON	INTRON	ENSG00000260126	ENSG00000260126.2	ENST00000567465.2	lncRNA	lncRNA	lncRNA	lncRNA	8	116	2	1.69015	2.45974	3.22933	0.0159619	5.51504e-4	0.109464	0.0216014
chr7	101986199	101986299	3368056	0	+	0.46	(0.44,0.476]	chr7	315233	262	INTRON	INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000497815.5:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000558469.5:ENST00000560541.5:ENST00000558836.5:ENST00000606749.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	46	2	2.33899	2.45966	2.58033	0.0247511	0.0142027	0.131869	0.0959987
chr19	28419434	28419529	7165336	0	-	0.452632	(0.44,0.476]	chr19	724143	11	EXON_LNCRNA	EXON_LNCRNA	ENSG00000260725	ENSG00000260725.1	ENST00000567877.1	lncRNA	lncRNA	lncRNA	lncRNA	8	112	2	2.41628	2.459625	2.50297	0.00156262	0.00135188	0.0365263	0.0336321
chr3	196060747	196060842	1897323	0	-	0.4	(0.378,0.408]	chr3	189919	1	INTRON	INTRON	TFRC	ENSG00000072274.13	ENST00000420415.5:ENST00000360110.9:ENST00000392396.7:ENST00000475593.5:ENST00000465288.5:ENST00000477148.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	17	219	2	1.70835	2.4596	3.21085	0.00580863	6.85899e-6	0.0664763	0.0018619
chr1	155269190	155269289	560346	0	-	0.585859	(0.57,1]	chr1	66869	5	EXON_LNCRNA	EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CLK2	ENSG00000176444.19	ENST00000368361.9:ENST00000361168.9:ENST00000355560.4:ENST00000476983.5:ENST00000497188.1:ENST00000471047.1:ENST00000484699.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	33	2	2.05026	2.4595900000000004	2.86892	0.0321326	0.00125753	0.145026	0.0323608
chr2	32212846	32212946	730264	0	+	0.41	(0.408,0.44]	chr2	84226	29	INTRON	INTRON	SLC30A6	ENSG00000152683.14	ENST00000357055.7:ENST00000435660.5:ENST00000282587.9:ENST00000449777.5:ENST00000454324.5:ENST00000379343.6:ENST00000406369.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	108	2	1.66532	2.459575	3.2538299999999998	0.0147313	2.37059e-4	0.0983813	0.0136195
chr2	108780180	108780278	848043	0	+	0.428571	(0.408,0.44]	chr2	94911	26	INTRON	INTRON	RANBP2	ENSG00000153201.16	ENST00000283195.11	protein_coding	protein_coding	protein_coding	protein_coding	4	54	2	1.6306	2.45956	3.28852	0.0544158	0.00287185	0.182272	0.0474836
chr3	152311637	152311737	1535415	0	+	0.22	[0,0.28]	chr3	159996	93	INTRON	INTRON	MBNL1	ENSG00000152601.18	ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000495875.6:ENST00000324210.10:ENST00000493459.5:ENST00000459747.1:ENST00000460591.5:ENST00000545754.5:ENST00000357472.7:ENST00000324196.9:ENST00000498502.5:ENST00000463374.5:ENST00000485910.5:ENST00000465907.6:ENST00000492948.5:ENST00000485509.5:ENST00000464596.5	protein_coding	protein_coding	protein_coding	protein_coding	12	215	2	2.16726	2.459535	2.75181	0.00205047	0.00126435	0.0409264	0.0329641
chr1	1256413	1256491	359010	0	-	0.615385	(0.57,1]	chr1	41434	2	SS3_PROX	SS3_PROX:INTRON	UBE2J2	ENSG00000160087.21	ENST00000450390.6:ENST00000349431.11:ENST00000347370.6:ENST00000400929.6:ENST00000464036.5:ENST00000360466.6:ENST00000400930.8:ENST00000473215.5:ENST00000435198.5:ENST00000509720.5:ENST00000491779.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	47	2	2.05009	2.459505	2.86892	0.00432938	0.00125753	0.0600206	0.0323608
chr12	112345204	112345304	5417382	0	-	0.46	(0.44,0.476]	chr12	517670	251	INTRON	INTRON	HECTD4	ENSG00000173064.14	ENST00000550722.5:ENST00000377560.9:ENST00000682272.1:ENST00000550724.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	53	2	1.55662	2.459465	3.36231	0.0688347	0.00161678	0.184298	0.0369204
chr17	32374306	32374406	6598238	0	+	0.49	(0.476,0.515]	chr17	641948	10	UTR3	UTR3:EXON_MRNA:INTRON	ZNF207	ENSG00000010244.19	ENST00000394670.9:ENST00000577908.5:ENST00000581531.5:ENST00000579810.2:ENST00000584416.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	59	2	2.37731	2.45944	2.54157	0.0111793	0.00697457	0.0937192	0.0718189
chr6	126026358	126026458	2956472	0	+	0.32	(0.28,0.32]	chr6	278051	47	INTRON	INTRON	TRMT11	ENSG00000066651.20	ENST00000479748.5:ENST00000368332.7:ENST00000648977.1:ENST00000334379.11:ENST00000466316.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	75	2	2.40458	2.45942	2.51426	0.0141047	0.00781326	0.0959618	0.0788246
chr1	65599403	65599502	138987	0	+	0.373737	(0.35,0.378]	chr1	15536	2	INTRON	INTRON	LEPR	ENSG00000116678.20	ENST00000371060.7:ENST00000371059.7:ENST00000349533.11:ENST00000616738.4:ENST00000344610.12:ENST00000462765.5:ENST00000371058.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	48	2	1.98929	2.4594050000000003	2.92952	0.0417909	0.00881187	0.147075	0.084878
chr1	1764527	1764627	361596	0	-	0.57	(0.515,0.57]	chr1	42211	21	INTRON	INTRON	NADK	ENSG00000008130.15	ENST00000378625.5:ENST00000341991.7:ENST00000341426.9:ENST00000492845.6:ENST00000492768.5:ENST00000460602.5:ENST00000464373.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	38	2	2.39351	2.459275	2.52504	0.029342	0.0100431	0.128055	0.0881096
chr17	61860586	61860676	6808913	0	-	0.522222	(0.515,0.57]	chr17	672636	3	INTRON	INTRON	BRIP1	ENSG00000136492.10	ENST00000259008.7:ENST00000682755.1:ENST00000682453.1:ENST00000683039.1:ENST00000682989.1:ENST00000682589.1:ENST00000683235.1:ENST00000682477.1:ENST00000577598.5:ENST00000584322.2:ENST00000683381.1:ENST00000577913.2:ENST00000682369.1:ENST00000683672.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	38	2	2.39351	2.459275	2.52504	0.029342	0.0100431	0.128055	0.0881096
chr5	54039707	54039807	2618201	0	-	0.54	(0.515,0.57]	chr5	248835	1277	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	16	188	2	2.39106	2.45925	2.52744	2.85786e-4	7.96877e-5	0.0150568	0.00801397
chr19	45861099	45861199	7193844	0	-	0.49	(0.476,0.515]	chr19	728658	54	INTRON	INTRON	SYMPK	ENSG00000125755.19	ENST00000245934.12:ENST00000593504.5:ENST00000599460.5:ENST00000598896.5:ENST00000602061.5:ENST00000598059.5:ENST00000594293.5:ENST00000593959.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	82	2	2.14989	2.45922	2.76855	0.00611105	0.00244302	0.0676501	0.0456956
chr15	51462101	51462198	6174798	0	-	0.42268	(0.408,0.44]	chr15	588593	21	INTRON	INTRON	DMXL2	ENSG00000104093.14	ENST00000251076.9:ENST00000543779.6:ENST00000560891.6:ENST00000449909.7:ENST00000559498.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	59	2	2.27698	2.4591250000000002	2.64127	0.0583528	0.00125199	0.167723	0.0328543
chr7	105581987	105582086	3605043	0	-	0.232323	[0,0.28]	chr7	336308	4	INTRON	INTRON	EFCAB10	ENSG00000185055.11	ENST00000469099.5:ENST00000490493.1	protein_coding	protein_coding	protein_coding	protein_coding	6	119	2	2.01411	2.4591250000000002	2.90414	0.0117032	0.0031674	0.0962115	0.0503085
chr11	57422345	57422440	4953403	0	-	0.4	(0.378,0.408]	chr11	464943	6	INTRON	INTRON	ENSG00000254979:SLC43A3	ENSG00000254979.5:ENSG00000134802.18	ENST00000534081.5:ENST00000395124.6:ENST00000395123.6:ENST00000352187.5:ENST00000529554.5:ENST00000533524.5:ENST00000530005.5:ENST00000528098.5:ENST00000529113.5:ENST00000525474.5:ENST00000529112.5:ENST00000526125.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	61	2	2.26009	2.45912	2.65815	0.0188651	0.00391167	0.108861	0.0569957
chr21	37380110	37380210	7406355	0	+	0.27	[0,0.28]	chr21	754850	46	INTRON	INTRON	DYRK1A	ENSG00000157540.22	ENST00000646523.1:ENST00000647425.1:ENST00000647188.2:ENST00000647504.1:ENST00000644942.1:ENST00000338785.8:ENST00000643624.1:ENST00000643551.1:ENST00000426672.6:ENST00000398960.7	protein_coding	protein_coding	protein_coding	protein_coding	3	63	2	2.3719	2.45907	2.54624	0.0388449	0.0139689	0.143072	0.10247
chr5	141605320	141605420	2740052	0	-	0.21	[0,0.28]	chr5	258168	167	INTRON	INTRON	DIAPH1	ENSG00000131504.18	ENST00000647433.1:ENST00000389054.8:ENST00000518047.5:ENST00000523100.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	63	2	2.3719	2.45907	2.54624	0.0388449	0.0139689	0.143072	0.10247
chr15	41092972	41093068	6153003	0	-	0.4375	(0.408,0.44]	chr15	585417	4	INTRON	INTRON	INO80	ENSG00000128908.18	ENST00000648947.1:ENST00000401393.7:ENST00000558357.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	99	2	2.23023	2.45887	2.68751	0.0087201	3.87147e-4	0.0788605	0.0177751
chr5	146149056	146149155	2747061	0	-	0.333333	(0.32,0.35]	chr5	258826	45	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	LARS1	ENSG00000133706.19	ENST00000674174.1:ENST00000674170.1:ENST00000674479.1:ENST00000674309.1:ENST00000674218.1:ENST00000674467.1:ENST00000674290.1:ENST00000674447.1:ENST00000674270.1:ENST00000674383.1:ENST00000674191.1:ENST00000674158.1:ENST00000394434.7:ENST00000674398.1:ENST00000674277.1:ENST00000274562.13:ENST00000510191.5:ENST00000674310.1:ENST00000512412.2:ENST00000508667.5:ENST00000507095.1:ENST00000674417.1:ENST00000674450.1:ENST00000674412.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	13	154	2	1.45317	2.45886	3.46455	0.0165749	1.84858e-4	0.110511	0.012355
chr13	72840664	72840764	5509946	0	+	0.51	(0.476,0.515]	chr13	527218	49	INTRON	INTRON	PIBF1	ENSG00000083535.16	ENST00000326291.11:ENST00000617689.4:ENST00000615625.1	protein_coding	protein_coding	protein_coding	protein_coding	3	44	2	2.43242	2.458845	2.48527	0.03496	0.0091895	0.13747500000000001	0.0855292
chr10	45873792	45873892	4607669	0	-	0.36	(0.35,0.378]	chr10	424444	103	INTRON	INTRON	PARGP1	ENSG00000239883.9	ENST00000440803.7:ENST00000688192.1:ENST00000686367.1:ENST00000693310.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	8	118	2	2.2519	2.45883	2.66576	0.0020199	0.00168985	0.0416115	0.037084
chr11	47998106	47998206	4789394	0	+	0.37	(0.35,0.378]	chr11	443265	167	INTRON	INTRON	PTPRJ	ENSG00000149177.14	ENST00000418331.7:ENST00000440289.6:ENST00000527952.1:ENST00000534219.5	protein_coding	protein_coding	protein_coding	protein_coding	3	48	2	2.44701	2.45883	2.47065	0.0386172	0.00900997	0.142656	0.0851009
chr9	89357213	89357311	4153428	0	+	0.377551	(0.35,0.378]	chr9	378876	8	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	SECISBP2	ENSG00000187742.15	ENST00000375807.8:ENST00000339901.8:ENST00000534113.6:ENST00000498819.1:ENST00000496597.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	48	2	2.44701	2.45883	2.47065	0.0386172	0.00900997	0.142656	0.0851009
chr15	52563391	52563490	6177260	0	-	0.252525	[0,0.28]	chr15	588892	58	INTRON	INTRON	ARPP19	ENSG00000128989.11	ENST00000566423.5:ENST00000249822.9:ENST00000561650.5:ENST00000563277.5:ENST00000567669.5:ENST00000569723.5:ENST00000569281.6:ENST00000564163.5:ENST00000563566.5:ENST00000561971.1:ENST00000567830.1	protein_coding	protein_coding	protein_coding	protein_coding	4	76	2	2.09841	2.458815	2.81922	0.0197411	0.0151026	0.109608	0.108435
chr7	73002720	73002820	3554148	0	-	0.55	(0.515,0.57]	chr7	330662	3	SS5_PROX	SS5_PROX:INTRON	STAG3L3	ENSG00000174353.17	ENST00000436857.5:ENST00000428423.5:ENST00000608210.5:ENST00000448173.5:ENST00000423834.6:ENST00000569650.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	3	38	2	1.94945	2.458795	2.96814	0.0414068	0.00756432	0.161557	0.0749063
chr10	70754007	70754107	4448156	0	+	0.57	(0.515,0.57]	chr10	410462	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ADAMTS14	ENSG00000138316.11	ENST00000373207.2:ENST00000373208.5	protein_coding	protein_coding	protein_coding	protein_coding	6	59	2	1.60369	2.458785	3.31388	0.027865	0.00174704	0.124158	0.0386026
chr1	225858106	225858204	645963	0	-	0.397959	(0.378,0.408]	chr1	76464	7	INTRON	INTRON	TMEM63A	ENSG00000196187.12	ENST00000366835.8:ENST00000487971.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	46	2	2.05897	2.458755	2.85854	0.0339294	0.0107837	0.134508	0.0920575
chr2	222938534	222938633	1022017	0	+	0.373737	(0.35,0.378]	chr2	109357	35	INTRON	INTRON	ACSL3	ENSG00000123983.15	ENST00000392066.7:ENST00000407441.5:ENST00000680251.1:ENST00000679541.1:ENST00000681906.1:ENST00000679545.1:ENST00000679932.1:ENST00000680100.1:ENST00000680475.1:ENST00000680525.1:ENST00000680420.1:ENST00000681326.1:ENST00000681292.1:ENST00000680395.1:ENST00000680736.1:ENST00000680147.1:ENST00000357430.8:ENST00000681009.1:ENST00000679514.1:ENST00000681697.1:ENST00000680921.1:ENST00000681383.1:ENST00000679558.1:ENST00000680684.1:ENST00000680424.1:ENST00000495541.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	57	2	1.92704	2.45874	2.99044	0.0228255	0.00894806	0.125469	0.0799922
chr18	9948655	9948752	6873698	0	+	0.453608	(0.44,0.476]	chr18	680899	12	EXON_MRNA	EXON_MRNA:INTRON	VAPA	ENSG00000101558.14	ENST00000400000.7:ENST00000340541.4:ENST00000584796.5:ENST00000583879.5:ENST00000583475.1:ENST00000577539.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	97	2	2.15136	2.458695	2.76603	0.0061794	6.78182e-4	0.0677395	0.0236375
chr1	203803516	203803615	296759	0	+	0.323232	(0.32,0.35]	chr1	34134	1	INTRON	INTRON	ZC3H11A:ZBED6	ENSG00000058673.17:ENSG00000257315.3	ENST00000367210.3:ENST00000453771.5:ENST00000432282.5:ENST00000638800.1:ENST00000367214.5:ENST00000639812.1:ENST00000367212.7:ENST00000332127.8:ENST00000550078.2:ENST00000495527.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	70	2	1.88141	2.45869	3.03597	0.0161424	0.00832487	0.109464	0.0774402
chr12	42211656	42211752	5313346	0	-	0.520833	(0.515,0.57]	chr12	505334	6	INTRON	INTRON	YAF2	ENSG00000015153.15	ENST00000534854.7:ENST00000327791.8:ENST00000380790.4:ENST00000552109.5:ENST00000547622.5:ENST00000547351.5:ENST00000551268.5:ENST00000548661.5:ENST00000546726.5:ENST00000547724.1:ENST00000552928.5:ENST00000548917.1:ENST00000547254.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	38	2	2.08547	2.458675	2.83188	0.0289426	0.0108207	0.1274	0.0920575
chr2	10177924	10178024	691283	0	+	0.56	(0.515,0.57]	chr2	81109	218	INTRON	INTRON	RRM2	ENSG00000171848.16	ENST00000641498.1:ENST00000381786.7	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	3	38	2	2.08547	2.458675	2.83188	0.0289426	0.0108207	0.1274	0.0920575
chr11	119016339	119016439	5046415	0	-	0.46	(0.44,0.476]	chr11	475828	4	SS3_PROX	SS3_PROX:INTRON	RPS25	ENSG00000118181.11	ENST00000527791.5:ENST00000532567.5:ENST00000527673.2:ENST00000527853.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	83	2	2.17952	2.458665	2.73781	0.00551887	0.00276493	0.0648867	0.04867
chr15	41481282	41481381	6006031	0	+	0.323232	(0.32,0.35]	chr15	571477	7	UTR3	UTR3:EXON_MRNA	RTF1	ENSG00000137815.15	ENST00000389629.9	protein_coding	protein_coding	protein_coding	protein_coding	6	96	2	1.9182	2.45859	2.99898	0.0141462	0.00148392	0.103512	0.034977
chr19	210066	210166	7108789	0	-	0.51	(0.476,0.515]	chr19	713686	2	SS3_PROX	SS3_PROX:INTRON	LINC01002	ENSG00000282508.2	ENST00000631772.1:ENST00000633151.1:ENST00000631644.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	12	164	2	2.05199	2.45855	2.86511	0.00218744	1.00925e-4	0.0435144	0.00906611
chr2	197420284	197420377	1306874	0	-	0.322581	(0.32,0.35]	chr2	136731	8	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	SF3B1	ENSG00000115524.17	ENST00000652026.1:ENST00000652738.1:ENST00000335508.11:ENST00000470268.2:ENST00000409915.8:ENST00000414963.2:ENST00000487698.5:ENST00000414174.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	70	2	1.63843	2.4585049999999997	3.27858	0.0360919	0.00368368	0.152563	0.0535094
chr3	185928585	185928683	1886507	0	-	0.346939	(0.32,0.35]	chr3	188632	20	EXON_MRNA	EXON_MRNA:INTRON	TRA2B	ENSG00000136527.19	ENST00000453386.7:ENST00000492417.5:ENST00000487615.5:ENST00000456380.5:ENST00000382191.4:ENST00000465245.1:ENST00000485530.5:ENST00000477939.1:ENST00000471134.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	70	2	1.63843	2.4585049999999997	3.27858	0.0360919	0.00368368	0.152563	0.0535094
chr3	15781336	15781436	1623654	0	-	0.43	(0.408,0.44]	chr3	168009	147	INTRON	INTRON	ANKRD28	ENSG00000206560.12	ENST00000399451.6:ENST00000624145.3:ENST00000683139.1:ENST00000412318.5:ENST00000497037.5:ENST00000451422.1:ENST00000498524.5:ENST00000439830.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	67	2	1.62843	2.458475	3.28852	0.025242	0.00287185	0.133676	0.0474836
chr7	74888800	74888900	3556747	0	-	0.44	(0.408,0.44]	chr7	331186	1	SS3_PROX	SS3_PROX:INTRON	STAG3L2	ENSG00000277072.5	ENST00000650988.1:ENST00000652688.1:ENST00000426587.5:ENST00000622110.5:ENST00000618922.4:ENST00000611766.4:ENST00000622215.1	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript:transcribed_unprocessed_pseudogene	6	67	2	1.62843	2.458475	3.28852	0.025242	0.00287185	0.133676	0.0474836
chr1	31290914	31291013	413232	0	-	0.30303	(0.28,0.32]	chr1	49803	11	INTRON	INTRON	SNRNP40	ENSG00000060688.13	ENST00000263694.9	protein_coding	protein_coding	protein_coding	protein_coding	3	55	2	2.28998	2.4584200000000003	2.62686	0.0289217	0.0166401	0.1274	0.110511
chr10	68045262	68045361	4637645	0	-	0.454545	(0.44,0.476]	chr10	426436	3	INTRON	INTRON	HERC4	ENSG00000148634.16	ENST00000373700.9:ENST00000412272.6:ENST00000395198.7:ENST00000473533.6:ENST00000427635.6:ENST00000513996.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	53	2	2.1762	2.458415	2.74063	0.0176095	0.0092251	0.105143	0.0855292
chr1	113127683	113127782	188664	0	+	0.484848	(0.476,0.515]	chr1	20954	37	UTR3	UTR3:EXON_MRNA	LRIG2	ENSG00000198799.12	ENST00000361127.6	protein_coding	protein_coding	protein_coding	protein_coding	3	44	2	1.91817	2.458345	2.99852	0.0459211	0.0077575	0.164984	0.0757402
chr15	41677248	41677347	6007025	0	+	0.515152	(0.476,0.515]	chr15	571636	23	INTRON	INTRON	MGA	ENSG00000174197.18	ENST00000566718.6:ENST00000545763.6:ENST00000570161.6:ENST00000566586.6:ENST00000219905.13:ENST00000561532.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	44	2	1.91817	2.458345	2.99852	0.0459211	0.0077575	0.164984	0.0757402
chr16	81484468	81484568	6405394	0	+	0.59	(0.57,1]	chr16	615026	386	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8	protein_coding	protein_coding	protein_coding	protein_coding	3	24	2	1.91937	2.45833	2.99729	0.0468438	0.00538023	0.167716	0.0642754
chr16	88774622	88774722	6540116	0	-	0.59	(0.57,1]	chr16	633998	248	INTRON	INTRON	PIEZO1	ENSG00000103335.22	ENST00000301015.14	protein_coding	protein_coding	protein_coding	protein_coding	3	24	2	1.91937	2.45833	2.99729	0.0468438	0.00538023	0.167716	0.0642754
chr19	12943941	12943981	7022528	0	+	0.675	(0.57,1]	chr19	698304	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	CALR	ENSG00000179218.15	ENST00000316448.10:ENST00000586967.2:ENST00000586760.2:ENST00000680816.1:ENST00000588454.6:ENST00000586803.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	24	2	1.91937	2.45833	2.99729	0.0468438	0.00538023	0.167716	0.0642754
chr20	50583006	50583103	7286650	0	+	0.701031	(0.57,1]	chr20	741290	4	UTR3	UTR3:EXON_MRNA	PTPN1	ENSG00000196396.10	ENST00000541713.5:ENST00000371621.5	protein_coding	protein_coding	protein_coding	protein_coding	3	24	2	1.91937	2.45833	2.99729	0.0468438	0.00538023	0.167716	0.0642754
chr8	52682051	52682151	3950777	0	-	0.61	(0.57,1]	chr8	362361	51	INTRON	INTRON	RB1CC1	ENSG00000023287.13	ENST00000025008.10:ENST00000435644.6:ENST00000521611.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	24	2	1.91937	2.45833	2.99729	0.0468438	0.00538023	0.167716	0.0642754
chr14	91508706	91508806	5956166	0	-	0.36	(0.35,0.378]	chr14	565483	176	INTRON	INTRON	PPP4R3A	ENSG00000100796.18	ENST00000554943.6:ENST00000554684.5:ENST00000555462.5:ENST00000554308.5:ENST00000554390.5:ENST00000555029.5:ENST00000557018.5:ENST00000554511.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:nonsense_mediated_decay	3	48	2	1.9755	2.458305	2.94111	0.0398617	0.0104563	0.161534	0.0855102
chr19	32692974	32693074	7049686	0	+	0.37	(0.35,0.378]	chr19	702959	3	SS5_PROX	SS5_PROX:INTRON	NUDT19	ENSG00000213965.4	ENST00000397061.4	protein_coding	protein_coding	protein_coding	protein_coding	3	48	2	1.9755	2.458305	2.94111	0.0398617	0.0104563	0.161534	0.0855102
chr1	235316618	235316718	663747	0	-	0.53	(0.515,0.57]	chr1	78552	555	INTRON	INTRON	ARID4B	ENSG00000054267.22	ENST00000349213.7:ENST00000366603.6:ENST00000264183.9:ENST00000421364.5:ENST00000491632.5:ENST00000418304.1:ENST00000466653.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	69	2	2.23927	2.4583	2.67733	0.00366712	0.00328621	0.0535094	0.0527031
chr5	168575552	168575651	2770682	0	-	0.474747	(0.44,0.476]	chr5	260749	62	INTRON	INTRON	PANK3	ENSG00000120137.7	ENST00000239231.7:ENST00000522176.1	protein_coding	protein_coding	protein_coding	protein_coding	3	44	2	1.77101	2.4583	3.14559	0.0693975	0.00384923	0.184298	0.0562562
chr7	128761041	128761140	3408601	0	+	0.313131	(0.28,0.32]	chr7	318455	8	INTRON	INTRON	CALU	ENSG00000128595.17	ENST00000535011.6:ENST00000542996.6:ENST00000249364.9:ENST00000449187.6:ENST00000479257.5:ENST00000493278.1	protein_coding	protein_coding	protein_coding	protein_coding	3	55	2	2.13651	2.458275	2.78004	0.0265696	0.0193244	0.134088	0.108861
chr4	1874136	1874236	1910597	0	+	0.38	(0.378,0.408]	chr4	191707	22	INTRON	INTRON	NSD2	ENSG00000109685.19	ENST00000508803.6:ENST00000507820.5:ENST00000508355.5:ENST00000514045.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	12	170	2	2.27032	2.45812	2.64592	0.00157451	1.30974e-4	0.0361957	0.0098569
chr16	89781597	89781692	6544449	0	-	0.547368	(0.515,0.57]	chr16	634529	13	INTRON	INTRON	FANCA	ENSG00000187741.16	ENST00000561667.2:ENST00000389301.8:ENST00000568369.6:ENST00000564475.6:ENST00000696275.1:ENST00000696287.1:ENST00000696286.1:ENST00000696274.1:ENST00000696291.1:ENST00000696276.1:ENST00000567205.2:ENST00000567284.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	73	2	1.11096	2.45808	3.8052	0.0747694	1.67082e-4	0.192803	0.0111796
chr1	171547786	171547886	253855	0	+	0.47	(0.44,0.476]	chr1	30186	17	INTRON	INTRON	PRRC2C	ENSG00000117523.18	ENST00000647382.2:ENST00000367742.7:ENST00000338920.8:ENST00000426496.6:ENST00000495585.1	protein_coding	protein_coding	protein_coding	protein_coding	3	44	2	2.02558	2.458025	2.89047	0.0363567	0.00955699	0.138959	0.0863913
chr20	32126719	32126818	7254478	0	+	0.454545	(0.44,0.476]	chr20	736838	163	INTRON	INTRON	TM9SF4	ENSG00000101337.16	ENST00000398022.7:ENST00000442842.5:ENST00000450829.5:ENST00000217315.9:ENST00000417389.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	44	2	2.02558	2.458025	2.89047	0.0363567	0.00955699	0.138959	0.0863913
chr5	177035627	177035727	2553060	0	+	0.46	(0.44,0.476]	chr5	243771	120	INTRON	INTRON	ZNF346	ENSG00000113761.12	ENST00000512315.5:ENST00000358149.8:ENST00000506693.5:ENST00000503425.5:ENST00000508155.5:ENST00000511834.5:ENST00000503039.1:ENST00000513587.5:ENST00000510933.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	53	2	1.69402	2.45797	3.22192	0.0456129	0.00360821	0.164236	0.0533855
chr2	38570822	38570921	1099448	0	-	0.474747	(0.44,0.476]	chr2	117914	5	INTRON	INTRON	HNRNPLL	ENSG00000143889.16	ENST00000449105.8:ENST00000409636.5:ENST00000358367.8:ENST00000608859.5:ENST00000378915.7:ENST00000272249.7:ENST00000409328.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	113	2	1.40934	2.457965	3.50659	0.0307189	5.83536e-5	0.13151	0.00625795
chr1	163331192	163331291	239626	0	+	0.333333	(0.32,0.35]	chr1	28870	19	INTRON	INTRON	NUF2	ENSG00000143228.13	ENST00000534289.5:ENST00000450453.6:ENST00000524800.5:ENST00000367900.7:ENST00000442820.5:ENST00000271452.8:ENST00000490881.5:ENST00000497990.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	51	2	2.4053	2.457955	2.51061	0.0364463	0.0108284	0.138959	0.0920575
chr10	45758520	45758618	4430012	0	+	0.326531	(0.32,0.35]	chr10	408373	10	INTRON	INTRON	WASHC2C	ENSG00000172661.20	ENST00000359860.7:ENST00000374362.6:ENST00000540872.6:ENST00000537517.6:ENST00000623400.4	protein_coding	protein_coding	protein_coding	protein_coding	3	51	2	2.4053	2.457955	2.51061	0.0364463	0.0108284	0.138959	0.0920575
chr15	27194665	27194765	5984390	0	+	0.33	(0.32,0.35]	chr15	569164	1675	INTRON	INTRON	GABRG3	ENSG00000182256.13	ENST00000615808.5:ENST00000555083.5	protein_coding	protein_coding	protein_coding	protein_coding	3	51	2	2.4053	2.457955	2.51061	0.0364463	0.0108284	0.138959	0.0920575
chr18	36145768	36145847	6891591	0	+	0.329114	(0.32,0.35]	chr18	683014	4	SS3_PROX	SS3_PROX:INTRON	ELP2	ENSG00000134759.14	ENST00000351393.10:ENST00000442325.6:ENST00000358232.11:ENST00000423854.6:ENST00000539560.5:ENST00000350494.10:ENST00000542824.5:ENST00000540799.1:ENST00000535093.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	51	2	2.4053	2.457955	2.51061	0.0364463	0.0108284	0.138959	0.0920575
chr8	91085642	91085739	3797155	0	+	0.340206	(0.32,0.35]	chr8	351911	9	UTR3	UTR3:EXON_MRNA	OTUD6B	ENSG00000155100.11	ENST00000285420.8:ENST00000617869.4:ENST00000615618.1:ENST00000404789.8	protein_coding	protein_coding	protein_coding	protein_coding	3	51	2	2.4053	2.457955	2.51061	0.0364463	0.0108284	0.138959	0.0920575
chr4	62449	62549	1905381	0	+	0.3	(0.28,0.32]	chr4	191003	19	INTRON	INTRON	ZNF595	ENSG00000272602.6	ENST00000608255.2:ENST00000609518.5:ENST00000509152.3:ENST00000610261.6	protein_coding	protein_coding	protein_coding	protein_coding	29	498	2	2.27562	2.457925	2.64023	5.06457e-4	1.90826e-5	0.020816	0.00334668
chr1	11802380	11802480	378910	0	-	0.36	(0.35,0.378]	chr1	44481	1	SS5_PROX	SS5_PROX:INTRON	MTHFR	ENSG00000177000.13	ENST00000376590.9:ENST00000376592.6:ENST00000376583.7:ENST00000376585.6:ENST00000641747.1:ENST00000641805.1:ENST00000641446.1:ENST00000423400.7:ENST00000641407.1:ENST00000641759.1:ENST00000641721.1:ENST00000376486.3:ENST00000641909.1:ENST00000641437.1:ENST00000418034.1:ENST00000431243.6:ENST00000642002.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	98	2	2.12112	2.4579199999999997	2.79472	0.00369765	0.00303911	0.0561162	0.0493883
chr9	130743054	130743154	4214155	0	+	0.45	(0.44,0.476]	chr9	386427	282	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000393293.4	protein_coding	protein_coding	protein_coding	protein_coding	5	61	2	1.60467	2.457885	3.3111	0.0411383	0.0020006	0.1451	0.0412555
chr19	28520916	28521016	7166304	0	-	0.52	(0.515,0.57]	chr19	724189	527	INTRON	INTRON	ENSG00000283403:ENSG00000267243	ENSG00000283403.1:ENSG00000267243.6	ENST00000592347.5:ENST00000593065.5	lncRNA	lncRNA	lncRNA	lncRNA	10	99	2	1.29901	2.457875	3.61674	0.0394428	3.351e-5	0.161534	0.00488123
chr12	111422473	111422573	5227753	0	+	0.29	(0.28,0.32]	chr12	495494	32	INTRON	INTRON	SH2B3	ENSG00000111252.11	ENST00000341259.7:ENST00000550925.2	protein_coding	protein_coding	protein_coding	protein_coding	2	41	2	2.45545	2.457815	2.46018	0.0438092	0.0375904	0.156054	0.14901
chr8	60578968	60579067	3758429	0	+	0.313131	(0.28,0.32]	chr8	349522	23	INTRON	INTRON	RAB2A	ENSG00000104388.15	ENST00000531289.5:ENST00000262646.12:ENST00000529579.5:ENST00000466595.5:ENST00000429861.5:ENST00000534260.5:ENST00000525529.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	41	2	2.45545	2.457815	2.46018	0.0438092	0.0375904	0.156054	0.14901
chr1	120617056	120617156	535911	0	-	0.47	(0.44,0.476]	chr1	63034	375	INTRON	INTRON	PDE4DIPP2	ENSG00000275131.3	ENST00000612480.2	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	6	83	2	2.38519	2.4577	2.53021	0.012193	8.87528e-4	0.0910127	0.0271952
chr4	73241892	73241992	2160658	0	-	0.27	[0,0.28]	chr4	212799	189	INTRON	INTRON	ANKRD17	ENSG00000132466.20	ENST00000358602.9:ENST00000558247.5:ENST00000330838.10:ENST00000561029.1	protein_coding	protein_coding	protein_coding	protein_coding	5	105	2	2.24053	2.4576900000000004	2.67485	0.0256186	0.00169125	0.120376	0.0381936
chr12	121346415	121346511	5437126	0	-	0.354167	(0.35,0.378]	chr12	519919	5	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ANAPC5	ENSG00000089053.13	ENST00000261819.8:ENST00000541887.5:ENST00000534976.5:ENST00000441917.6:ENST00000541652.5:ENST00000544442.5:ENST00000536416.5:ENST00000539871.1:ENST00000536837.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	11	130	2	1.62853	2.45764	3.28675	0.0101029	3.6403e-4	0.0886077	0.0176829
chr17	28663240	28663339	6584385	0	+	0.353535	(0.35,0.378]	chr17	640008	5	INTRON	INTRON	SUPT6H	ENSG00000109111.15	ENST00000347486.8:ENST00000314616.11	protein_coding	protein_coding	protein_coding	protein_coding	4	64	2	2.23651	2.457625	2.67874	0.020879	0.00373022	0.111766	0.0561984
chr17	82094753	82094819	6851251	0	-	0.272727	[0,0.28]	chr17	678893	2	INTRON	INTRON	FASN	ENSG00000169710.9	ENST00000306749.4:ENST00000634990.1:ENST00000635197.1:ENST00000637525.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	31	613	2	2.40892	2.45761	2.5063	2.76738e-4	1.09327e-4	0.0152705	0.00884858
chr2	101276274	101276370	1199218	0	-	0.385417	(0.378,0.408]	chr2	128147	8	UTR3	UTR3:EXON_MRNA:INTRON	RNF149	ENSG00000163162.9	ENST00000424632.5:ENST00000295317.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	61	2	2.35103	2.457555	2.56408	0.014158	0.00566993	0.0959618	0.0678837
chr6	147737655	147737755	2991375	0	+	0.36	(0.35,0.378]	chr6	280177	2	INTRON	INTRON	ENSG00000227681	ENSG00000227681.5	ENST00000427015.1	lncRNA	lncRNA	lncRNA	lncRNA	4	64	2	2.32464	2.4575500000000003	2.59046	0.0159285	0.00528327	0.101453	0.0656295
chr10	997608	997708	4379089	0	+	0.43	(0.408,0.44]	chr10	403832	3	SS5_PROX	SS5_PROX:INTRON	GTPBP4	ENSG00000107937.19	ENST00000360803.9:ENST00000491635.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	68	2	1.35436	2.457465	3.56057	0.0603719	9.67143e-4	0.19151	0.0282401
chr20	6022483	6022582	7230714	0	+	0.454545	(0.44,0.476]	chr20	734840	66	INTRON	INTRON	CRLS1	ENSG00000088766.12	ENST00000452938.5:ENST00000378863.9:ENST00000378868.4:ENST00000489345.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	127	2	1.64354	2.457465	3.27139	0.0157859	4.01351e-5	0.101453	0.00513517
chr21	10340213	10340313	7427423	0	-	0.33	(0.32,0.35]	chr21	757676	4	SS5_PROX	SS5_PROX:INTRON	ENSG00000277693	ENSG00000277693.2	ENST00000622592.1:ENST00000616952.1:ENST00000667012.1	lncRNA	lncRNA	lncRNA	lncRNA	7	120	2	2.37199	2.457435	2.54288	0.00465833	0.00151636	0.0629753	0.0352794
chr19	39354852	39354947	7067322	0	+	0.4	(0.378,0.408]	chr19	705687	4	INTRON	INTRON	SAMD4B	ENSG00000179134.16	ENST00000610417.5:ENST00000598913.5:ENST00000314471.10:ENST00000599712.1	protein_coding	protein_coding	protein_coding	protein_coding	4	56	2	2.31181	2.457385	2.60296	0.0267851	0.00548372	0.123349	0.0671431
chr3	196366836	196366935	1898996	0	-	0.525253	(0.515,0.57]	chr3	190164	38	INTRON	INTRON	UBXN7	ENSG00000163960.12	ENST00000296328.9:ENST00000429160.1:ENST00000428095.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	51	2	2.32836	2.4573	2.58624	0.0126662	0.00526399	0.0982897	0.0633874
chr7	157221865	157221964	3454789	0	+	0.525253	(0.515,0.57]	chr7	322986	12	EXON_MRNA	EXON_MRNA:INTRON	UBE3C	ENSG00000009335.18	ENST00000348165.10:ENST00000470408.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	51	2	2.32836	2.4573	2.58624	0.0126662	0.00526399	0.0982897	0.0633874
chr1	223808638	223808738	642998	0	-	0.32	(0.28,0.32]	chr1	75932	13	INTRON	INTRON	TP53BP2	ENSG00000143514.17	ENST00000343537.12:ENST00000391878.6:ENST00000494100.1:ENST00000496282.5:ENST00000473135.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	139	2	2.17284	2.4572950000000002	2.74175	0.00457205	0.00160875	0.0595107	0.03684
chr1	22097184	22097283	42664	0	+	0.414141	(0.408,0.44]	chr1	5130	58	UTR3	UTR3:EXON_MRNA	CDC42	ENSG00000070831.18	ENST00000656825.1	protein_coding	protein_coding	protein_coding	protein_coding	6	68	2	1.27662	2.457235	3.63785	0.0787183	4.70012e-4	0.198567	0.0196294
chr16	67949207	67949299	6506073	0	-	0.51087	(0.476,0.515]	chr16	629814	7	INTRON	INTRON	SLC12A4	ENSG00000124067.17	ENST00000422611.6:ENST00000316341.8:ENST00000572037.5:ENST00000541864.6:ENST00000570802.5:ENST00000576616.5:ENST00000537830.6:ENST00000573023.6:ENST00000576513.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	76	2	1.74317	2.457185	3.1712	0.0396373	4.95874e-4	0.161534	0.0206925
chr16	16605679	16605779	6311919	0	+	0.5	(0.476,0.515]	chr16	604098	1057	INTRON	INTRON	ENSG00000260126	ENSG00000260126.2	ENST00000567465.2	lncRNA	lncRNA	lncRNA	lncRNA	2	33	2	2.28264	2.45716	2.63168	0.0534132	0.0237106	0.179876	0.118716
chr17	57416519	57416619	6634358	0	+	0.5	(0.476,0.515]	chr17	648045	91	INTRON	INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000674961.1:ENST00000582453.5:ENST00000675656.1:ENST00000322684.7:ENST00000579590.5:ENST00000442934.6:ENST00000579180.2:ENST00000579205.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	33	2	2.28264	2.45716	2.63168	0.0534132	0.0237106	0.179876	0.118716
chr22	41500852	41500951	7523856	0	+	0.494949	(0.476,0.515]	chr22	768944	6	INTRON	INTRON	ACO2	ENSG00000100412.17	ENST00000676748.1:ENST00000677554.1:ENST00000679320.1:ENST00000678600.1:ENST00000678394.1:ENST00000676792.1:ENST00000678688.1:ENST00000677516.1:ENST00000678788.1:ENST00000677007.1:ENST00000676959.1:ENST00000679311.1:ENST00000216254.9:ENST00000676714.1:ENST00000466237.2:ENST00000677427.1:ENST00000678454.1:ENST00000677153.1:ENST00000678819.1:ENST00000396512.3:ENST00000678269.1:ENST00000677532.1:ENST00000471094.1:ENST00000679264.1:ENST00000677698.1:ENST00000676822.1:ENST00000676664.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	33	2	2.28264	2.45716	2.63168	0.0534132	0.0237106	0.179876	0.118716
chr6	110774736	110774836	3190050	0	-	0.5	(0.476,0.515]	chr6	297127	4	INTRON	INTRON	CDK19	ENSG00000155111.15	ENST00000323817.7:ENST00000368911.8:ENST00000413605.6:ENST00000457688.5:ENST00000460913.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	33	2	2.28264	2.45716	2.63168	0.0534132	0.0237106	0.179876	0.118716
chr1	32195693	32195793	64328	0	+	0.58	(0.57,1]	chr1	8208	6	UTR3	UTR3:EXON_MRNA	TXLNA	ENSG00000084652.16	ENST00000373610.8:ENST00000373609.1	protein_coding	protein_coding	protein_coding	protein_coding	14	89	2	1.74422	2.45708	3.16994	0.00373471	1.01327e-5	0.0562234	0.00247779
chr8	47924518	47924616	3945382	0	-	0.387755	(0.378,0.408]	chr8	361877	58	INTRON	INTRON	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7	protein_coding	protein_coding	protein_coding	protein_coding	4	55	2	1.72045	2.457065	3.19368	0.0424671	0.00426861	0.161763	0.0573912
chr1	110364485	110364584	182596	0	+	0.393939	(0.378,0.408]	chr1	20257	81	INTRON	INTRON	LAMTOR5-AS1	ENSG00000224699.10	ENST00000626572.2	lncRNA	lncRNA	lncRNA	lncRNA	43	592	2	2.31727	2.45698	2.59669	2.90779e-5	2.03977e-5	0.00428285	0.00366937
chr17	61828642	61828742	6808585	0	-	0.34	(0.32,0.35]	chr17	672605	195	INTRON	INTRON	BRIP1	ENSG00000136492.10	ENST00000259008.7:ENST00000682755.1:ENST00000682453.1:ENST00000683039.1:ENST00000682989.1:ENST00000682589.1:ENST00000683235.1:ENST00000682477.1:ENST00000684584.1:ENST00000577598.5:ENST00000682066.1:ENST00000584322.2:ENST00000683381.1:ENST00000579028.2:ENST00000682611.1:ENST00000683692.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	51	2	1.83416	2.4569550000000002	3.07975	0.0631198	0.00554235	0.176946	0.0674105
chr16	85556056	85556146	6415391	0	+	0.611111	(0.57,1]	chr16	615466	2	UTR5	UTR5:EXON_MRNA:INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	21	145	2	2.40511	2.45695	2.50879	7.6051e-5	1.22844e-5	0.00731806	0.00278588
chr10	35335627	35335727	4601752	0	-	0.48	(0.476,0.515]	chr10	423936	3	SS5_PROX	SS5_PROX:INTRON	CCNY-AS1	ENSG00000271335.6	ENST00000659251.1:ENST00000605499.1	lncRNA	lncRNA	lncRNA	lncRNA	4	53	2	1.83961	2.456915	3.07422	0.0314489	0.00506023	0.13151	0.0646039
chr6	158418374	158418473	3020409	0	+	0.323232	(0.32,0.35]	chr6	281703	48	INTRON	INTRON	ENSG00000274023:TULP4	ENSG00000274023.1:ENSG00000130338.13	ENST00000619713.1:ENST00000367097.8:ENST00000367094.6:ENST00000616856.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	3	51	2	1.88909	2.4568950000000003	3.0247	0.0553737	0.00671684	0.165463	0.0738715
chr1	54387478	54387577	463572	0	-	0.333333	(0.32,0.35]	chr1	55784	308	INTRON	INTRON	SSBP3	ENSG00000157216.16	ENST00000610401.5:ENST00000357475.9:ENST00000371319.8:ENST00000417664.7:ENST00000533946.6:ENST00000371320.8:ENST00000525990.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	38	2	2.40308	2.456845	2.51061	0.0417732	0.0364463	0.161736	0.138959
chr1	92835789	92835889	162465	0	+	0.36	(0.35,0.378]	chr1	17534	2	SS3_PROX	SS3_PROX:INTRON	RPL5	ENSG00000122406.14	ENST00000645300.1:ENST00000370321.8:ENST00000645119.1:ENST00000470843.5:ENST00000315741.5:ENST00000461952.1:ENST00000645908.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	108	2	2.34722	2.45678	2.56634	0.00312988	0.00190773	0.0499376	0.0403772
chr12	64714043	64714143	5350118	0	-	0.55	(0.515,0.57]	chr12	511252	7	UTR3	UTR3:EXON_MRNA	GNS	ENSG00000135677.11	ENST00000418919.6:ENST00000258145.8	protein_coding	protein_coding	protein_coding	protein_coding	8	95	2	1.86218	2.45674	3.0513	0.0100169	1.58148e-4	0.0880217	0.0114628
chr12	71786368	71786468	5169048	0	+	0.32	(0.28,0.32]	chr12	489680	8	UTR3	UTR3:EXON_MRNA	RAB21	ENSG00000080371.6	ENST00000261263.5	protein_coding	protein_coding	protein_coding	protein_coding	5	91	2	2.20515	2.4567300000000003	2.70831	0.011946	0.00378444	0.0899583	0.0562562
chr6	133987239	133987339	2962107	0	+	0.37	(0.35,0.378]	chr6	278551	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TBPL1	ENSG00000028839.10	ENST00000613034.4:ENST00000237264.9:ENST00000477527.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	77	2	2.28182	2.456675	2.63153	0.00637232	0.00562761	0.0724821	0.0653997
chr7	157367427	157367483	3455611	0	+	0.392857	(0.378,0.408]	chr7	323074	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	DNAJB6	ENSG00000105993.15	ENST00000441561.5:ENST00000429029.6:ENST00000262177.9:ENST00000486083.6:ENST00000417758.5:ENST00000459889.5:ENST00000443280.5:ENST00000488001.5:ENST00000441291.5:ENST00000412557.5:ENST00000453383.5:ENST00000634080.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	64	2	1.8252	2.456645	3.08809	0.0619563	5.71831e-4	0.174514	0.0217398
chr2	111445114	111445213	1211302	0	-	0.363636	(0.35,0.378]	chr2	128903	36	INTRON	INTRON	MIR4435-2HG	ENSG00000172965.17	ENST00000645030.2:ENST00000642191.1:ENST00000673798.1:ENST00000645051.2:ENST00000673649.1:ENST00000669658.1:ENST00000669917.1:ENST00000661559.1:ENST00000653687.1:ENST00000667670.1:ENST00000609220.2:ENST00000656760.1:ENST00000609902.6:ENST00000666683.1:ENST00000674070.1:ENST00000662335.1:ENST00000664422.1:ENST00000673775.1:ENST00000674092.1:ENST00000673958.1:ENST00000658936.1:ENST00000662635.1:ENST00000666204.1:ENST00000659458.1:ENST00000664443.1:ENST00000670295.1:ENST00000661655.1:ENST00000666390.1:ENST00000659079.1:ENST00000660442.1:ENST00000664009.1:ENST00000439362.6:ENST00000654473.1:ENST00000664999.1:ENST00000673728.1:ENST00000659791.1:ENST00000666144.1:ENST00000659933.1:ENST00000670715.1:ENST00000653568.1:ENST00000643013.1:ENST00000673866.1:ENST00000443467.6:ENST00000669875.1:ENST00000673653.1:ENST00000673988.1:ENST00000661945.1:ENST00000669515.1:ENST00000431385.6:ENST00000656416.1:ENST00000674037.1:ENST00000432818.5:ENST00000674013.1:ENST00000444301.5:ENST00000673964.1:ENST00000673845.1:ENST00000673756.1:ENST00000673960.1:ENST00000673804.1:ENST00000673632.1:ENST00000453478.2:ENST00000673937.1:ENST00000673654.1:ENST00000409569.2:ENST00000674087.1:ENST00000419736.5:ENST00000673840.1:ENST00000674045.1:ENST00000673821.1:ENST00000643766.1:ENST00000308604.5:ENST00000674026.1:ENST00000604981.5:ENST00000673894.1:ENST00000442293.5:ENST00000441075.1	lncRNA	lncRNA	lncRNA	lncRNA	3	49	2	1.82887	2.45659	3.08431	0.0584878	0.0065853	0.189395	0.0701901
chr12	111595250	111595350	5413192	0	-	0.31	(0.28,0.32]	chr12	516941	305	INTRON	INTRON	ATXN2	ENSG00000204842.18	ENST00000642389.2:ENST00000608853.5:ENST00000672613.1:ENST00000673436.1:ENST00000643669.2:ENST00000616825.4:ENST00000389153.10:ENST00000550104.5:ENST00000483311.6:ENST00000672335.1:ENST00000673557.1:ENST00000673283.1:ENST00000673449.1:ENST00000535949.5:ENST00000542287.6:ENST00000644883.1:ENST00000647305.1:ENST00000671792.1:ENST00000392645.6:ENST00000672105.1:ENST00000549455.1:ENST00000548492.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	76	2	1.86825	2.45655	3.04485	0.017708	0.00894006	0.11319	0.0799922
chr7	105357855	105357955	3603595	0	-	0.52	(0.515,0.57]	chr7	336161	509	INTRON	INTRON	SRPK2	ENSG00000135250.17	ENST00000393651.8:ENST00000482897.5:ENST00000460391.5:ENST00000462282.5:ENST00000465112.5:ENST00000482862.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	45	2	1.94493	2.456535	2.96814	0.0204583	0.00756432	0.122204	0.0749063
chr4	67691766	67691865	2154374	0	-	0.313131	(0.28,0.32]	chr4	212192	92	INTRON	INTRON	UBA6	ENSG00000033178.13	ENST00000322244.10:ENST00000420827.2:ENST00000429659.7:ENST00000506571.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	67	2	2.18212	2.456445	2.73077	0.0220748	0.010265700000000001	0.115395	0.089002
chr16	90137685	90137762	6424251	0	+	0.415584	(0.408,0.44]	chr16	617208	1	EXON_LNCRNA	EXON_LNCRNA:INTRON	FAM157C	ENSG00000260528.6	ENST00000563357.1:ENST00000660047.1:ENST00000568070.1	lncRNA	lncRNA	lncRNA	lncRNA	4	59	2	2.36185	2.4564399999999997	2.55103	0.0133164	0.00587353	0.094512	0.0690758
chr16	89456487	89456587	6543261	0	-	0.45	(0.44,0.476]	chr16	634281	248	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	14	191	2	2.07201	2.4563550000000003	2.8407	0.00259303	2.07373e-5	0.0453401	0.00353137
chr12	111578967	111579067	5413029	0	-	0.48	(0.476,0.515]	chr12	516941	142	INTRON	INTRON	ATXN2	ENSG00000204842.18	ENST00000642389.2:ENST00000608853.5:ENST00000672613.1:ENST00000673436.1:ENST00000643669.2:ENST00000616825.4:ENST00000389153.10:ENST00000550104.5:ENST00000483311.6:ENST00000672335.1:ENST00000673557.1:ENST00000673283.1:ENST00000673449.1:ENST00000535949.5:ENST00000542287.6:ENST00000644883.1:ENST00000647305.1:ENST00000671792.1:ENST00000392645.6:ENST00000672105.1:ENST00000549455.1:ENST00000548492.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	136	2	2.31359	2.456305	2.59902	0.00177302	3.05324e-4	0.0378427	0.0155972
chr12	111433961	111434061	5227868	0	+	0.34	(0.32,0.35]	chr12	495494	147	INTRON	INTRON	SH2B3	ENSG00000111252.11	ENST00000341259.7:ENST00000550925.2	protein_coding	protein_coding	protein_coding	protein_coding	4	61	2	1.83315	2.45625	3.07935	0.0313348	0.00724137	0.144381	0.0729826
chr1	39427787	39427860	78209	0	+	0.356164	(0.35,0.378]	chr1	10046	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MACF1	ENSG00000127603.32	ENST00000361689.7:ENST00000567887.5:ENST00000372915.8:ENST00000564288.6:ENST00000671089.2:ENST00000372925.6:ENST00000289893.8:ENST00000686067.1:ENST00000687997.1:ENST00000530275.3:ENST00000683517.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	78	2	1.7942	2.4562150000000003	3.11823	0.0378648	5.25625e-4	0.141212	0.0206013
chr1	3861399	3861498	3352	0	+	0.434343	(0.408,0.44]	chr1	718	5	INTRON	INTRON	DFFB	ENSG00000169598.17	ENST00000338895.7:ENST00000491998.5:ENST00000468793.5:ENST00000339350.7:ENST00000477548.5:ENST00000378209.8:ENST00000378206.5:ENST00000475969.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	33	2	2.3975	2.45621	2.51492	0.040266	0.0329839	0.161534	0.133816
chr16	74302975	74303067	6389192	0	+	0.413043	(0.408,0.44]	chr16	614412	3	INTRON	INTRON	PSMD7	ENSG00000103035.11	ENST00000219313.9:ENST00000568717.1:ENST00000567958.5:ENST00000568615.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	33	2	2.3975	2.45621	2.51492	0.040266	0.0329839	0.161534	0.133816
chr17	82906365	82906461	6695786	0	+	0.416667	(0.408,0.44]	chr17	655009	3	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	TBCD	ENSG00000141556.22	ENST00000682479.1:ENST00000682722.1:ENST00000684464.1:ENST00000684544.1:ENST00000681983.1:ENST00000684361.1:ENST00000683184.1:ENST00000683282.1:ENST00000684408.1:ENST00000355528.9:ENST00000683444.1:ENST00000684776.1:ENST00000683041.1:ENST00000684760.1:ENST00000684349.1:ENST00000682213.1:ENST00000683009.1:ENST00000682921.1:ENST00000539345.6:ENST00000684000.1:ENST00000684188.1:ENST00000684429.1:ENST00000682610.1:ENST00000683821.1:ENST00000682654.1:ENST00000576160.6:ENST00000571712.5:ENST00000576996.5:ENST00000574801.5:ENST00000683584.1:ENST00000682099.1:ENST00000684559.1:ENST00000571316.5:ENST00000576760.5:ENST00000572984.5:ENST00000683839.1:ENST00000574975.5:ENST00000572953.5:ENST00000571796.5:ENST00000682315.1:ENST00000574422.1:ENST00000682225.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	33	2	2.3975	2.45621	2.51492	0.040266	0.0329839	0.161534	0.133816
chr22	16795779	16795879	7546357	0	-	0.44	(0.408,0.44]	chr22	771315	110	INTRON	INTRON	XKR3	ENSG00000172967.8	ENST00000331428.5:ENST00000684488.1	protein_coding	protein_coding	protein_coding	protein_coding	2	33	2	2.3975	2.45621	2.51492	0.040266	0.0329839	0.161534	0.133816
chr9	96770404	96770503	4297030	0	-	0.434343	(0.408,0.44]	chr9	395138	64	INTRON	INTRON	ZNF510	ENSG00000081386.13	ENST00000223428.9:ENST00000375231.5:ENST00000374641.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	33	2	2.3975	2.45621	2.51492	0.040266	0.0329839	0.161534	0.133816
chr13	95190140	95190240	5638754	0	-	0.46	(0.44,0.476]	chr13	537121	12	INTRON	INTRON	ABCC4	ENSG00000125257.16	ENST00000645237.2:ENST00000643051.1:ENST00000643842.1:ENST00000646439.1:ENST00000643816.1:ENST00000536256.3:ENST00000643556.1:ENST00000629385.1:ENST00000642524.1:ENST00000645532.1:ENST00000644471.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	81	2	2.35576	2.456125	2.55649	0.00670547	0.00208591	0.0707084	0.0424672
chr5	132180375	132180461	2720783	0	-	0.430233	(0.408,0.44]	chr5	255745	6	INTRON	INTRON	ENSG00000224015	ENSG00000224015.1	ENST00000457890.1	lncRNA	lncRNA	lncRNA	lncRNA	5	71	2	2.04611	2.456115	2.86612	0.016628	0.00157924	0.102621	0.0366789
chr19	51875394	51875493	7204278	0	-	0.434343	(0.408,0.44]	chr19	731044	13	INTRON	INTRON	ZNF577	ENSG00000161551.15	ENST00000638827.1:ENST00000639703.1:ENST00000640678.1:ENST00000640955.1:ENST00000301399.12:ENST00000638348.2:ENST00000451628.9:ENST00000639636.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	53	2	1.75791	2.456025	3.15414	0.0378795	0.00469847	0.157034	0.0600108
chrX	110057607	110057707	7700583	0	+	0.41	(0.408,0.44]	chrX	788130	531	INTRON	INTRON	TMEM164	ENSG00000157600.12	ENST00000372072.7:ENST00000471255.5:ENST00000372073.5:ENST00000372068.7:ENST00000288381.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	53	2	1.75791	2.456025	3.15414	0.0378795	0.00469847	0.157034	0.0600108
chr2	222626163	222626262	1332811	0	-	0.454545	(0.44,0.476]	chr2	139860	10	INTRON	INTRON	FARSB	ENSG00000116120.11	ENST00000281828.8	protein_coding	protein_coding	protein_coding	protein_coding	7	99	2	2.41094	2.455995	2.50105	0.00240161	0.00205841	0.0452061	0.0409869
chr1	65286389	65286489	135857	0	+	0.46	(0.44,0.476]	chr1	15346	211	INTRON	INTRON	DNAJC6	ENSG00000116675.16	ENST00000463018.5:ENST00000494710.6:ENST00000263441.11:ENST00000395325.7:ENST00000483402.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	127	2	1.82207	2.455985	3.0899	0.00778322	1.17872e-4	0.0758775	0.00930884
chr13	95131598	95131698	5638156	0	-	0.45	(0.44,0.476]	chr13	537056	152	INTRON	INTRON	ABCC4	ENSG00000125257.16	ENST00000645237.2:ENST00000643051.1:ENST00000643842.1:ENST00000646439.1:ENST00000644880.1:ENST00000643816.1:ENST00000536256.3:ENST00000643556.1:ENST00000629385.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	90	2	2.20226	2.45593	2.7096	0.00376205	0.00238044	0.0539118	0.0449397
chr10	68361192	68361292	4638681	0	-	0.5	(0.476,0.515]	chr10	426535	54	INTRON	INTRON	RUFY2	ENSG00000204130.14	ENST00000466493.5:ENST00000484083.5:ENST00000463210.6:ENST00000602465.6:ENST00000388768.6:ENST00000265865.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	80	2	2.07116	2.45592	2.84068	0.00731321	0.00217133	0.076234	0.0417893
chr4	165341156	165341250	2079773	0	+	0.319149	(0.28,0.32]	chr4	205588	4	INTRON	INTRON	MSMO1	ENSG00000052802.13	ENST00000261507.11:ENST00000393766.6	protein_coding	protein_coding	protein_coding	protein_coding	9	115	2	1.86699	2.45592	3.04485	0.00894006	0.00507516	0.0799922	0.0646039
chr2	222882768	222882867	1021429	0	+	0.50505	(0.476,0.515]	chr2	109256	13	INTRON	INTRON	ACSL3	ENSG00000123983.15	ENST00000392066.7:ENST00000407441.5:ENST00000680251.1:ENST00000679541.1:ENST00000681906.1:ENST00000679545.1:ENST00000679932.1:ENST00000680100.1:ENST00000680475.1:ENST00000680525.1:ENST00000680420.1:ENST00000681326.1:ENST00000681292.1:ENST00000681017.1:ENST00000680382.1:ENST00000535678.2:ENST00000680395.1:ENST00000680736.1:ENST00000679546.1:ENST00000680147.1:ENST00000357430.8:ENST00000681009.1:ENST00000679514.1:ENST00000681697.1:ENST00000680921.1:ENST00000681383.1:ENST00000413316.1:ENST00000679558.1:ENST00000680684.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	52	2	1.96833	2.455915	2.9435	0.0195007	0.00929849	0.119967	0.0817766
chr7	6034925	6035025	3475992	0	-	0.5	(0.476,0.515]	chr7	325180	55	INTRON	INTRON	EIF2AK1	ENSG00000086232.13	ENST00000199389.11	protein_coding	protein_coding	protein_coding	protein_coding	4	52	2	1.96833	2.455915	2.9435	0.0195007	0.00929849	0.119967	0.0817766
chr1	160335522	160335622	572242	0	-	0.39	(0.378,0.408]	chr1	69365	2	SS3_PROX	SS3_PROX:INTRON	COPA	ENSG00000122218.17	ENST00000241704.8:ENST00000696204.1:ENST00000696203.1:ENST00000649963.1:ENST00000696208.1:ENST00000696207.1:ENST00000368069.7:ENST00000647693.1:ENST00000649787.1:ENST00000650154.1:ENST00000647799.1:ENST00000648805.1:ENST00000647683.1:ENST00000649231.1:ENST00000696209.1:ENST00000696210.1:ENST00000696211.1:ENST00000696212.1:ENST00000696214.1:ENST00000696213.1:ENST00000696215.1:ENST00000541366.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	63	2	2.0102	2.4559100000000003	2.90162	0.0113157	0.00940766	0.0886121	0.0861183
chr5	32427879	32427979	2599160	0	-	0.33	(0.32,0.35]	chr5	246966	74	INTRON	INTRON	ZFR	ENSG00000056097.16	ENST00000265069.13:ENST00000505366.1:ENST00000505204.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	116	2	2.15713	2.45588	2.75463	0.00387748	0.00218809	0.0543578	0.0435144
chr1	155913533	155913630	564632	0	-	0.298969	(0.28,0.32]	chr1	67435	6	UTR3	UTR3:EXON_MRNA	KHDC4	ENSG00000132680.11	ENST00000368321.8:ENST00000368320.7	protein_coding	protein_coding	protein_coding	protein_coding	18	304	2	2.39598	2.45583	2.51568	5.59411e-4	1.74465e-4	0.0218577	0.0114766
chr3	45705509	45705609	1417201	0	+	0.48	(0.476,0.515]	chr3	148666	3	SS5_PROX	SS5_PROX:INTRON	SACM1L	ENSG00000211456.13	ENST00000464524.5:ENST00000455997.5:ENST00000418611.5:ENST00000672477.1:ENST00000463237.5:ENST00000441228.5:ENST00000463347.5:ENST00000438671.3:ENST00000389061.10:ENST00000445499.2:ENST00000478586.3:ENST00000672858.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	52	2	1.86014	2.4558299999999997	3.05152	0.0277606	0.0064848	0.137011	0.0699952
chr4	78830807	78830906	1981932	0	+	0.393939	(0.378,0.408]	chr4	198473	43	INTRON	INTRON	BMP2K	ENSG00000138756.19	ENST00000389010.7:ENST00000502613.3:ENST00000502871.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	101	2	2.1516	2.455785	2.75997	0.0065185	7.19668e-4	0.0699952	0.0244856
chr7	156890869	156890969	3687995	0	-	0.53	(0.515,0.57]	chr7	342096	536	INTRON	INTRON	LMBR1	ENSG00000105983.23	ENST00000353442.10:ENST00000415428.5:ENST00000454132.5:ENST00000434503.5:ENST00000430278.5:ENST00000434278.5:ENST00000444719.5:ENST00000461469.5:ENST00000414218.1:ENST00000434453.1:ENST00000498034.5:ENST00000433968.5:ENST00000485985.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	69	2	1.90463	2.45578	3.00693	0.0141753	7.26845e-4	0.0959618	0.0245647
chr20	47289590	47289686	7348834	0	-	0.3125	(0.28,0.32]	chr20	749312	20	INTRON	INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000467200.6:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000468376.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	15	247	2	2.06166	2.4557700000000002	2.84988	0.00132492	2.52158e-4	0.0334577	0.0146996
chr7	77940217	77940317	3345385	0	+	0.36	(0.35,0.378]	chr7	311566	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PHTF2	ENSG00000006576.17	ENST00000422959.7:ENST00000416283.6:ENST00000307305.12:ENST00000424760.5:ENST00000275575.11:ENST00000248550.7:ENST00000479515.1:ENST00000470215.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	89	2	1.64329	2.4556649999999998	3.26804	0.0384351	2.47065e-4	0.142316	0.0139149
chr18	3606839	3606935	6867430	0	+	0.510417	(0.476,0.515]	chr18	680392	4	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	DLGAP1-AS2	ENSG00000262001.2	ENST00000572856.1:ENST00000692104.1:ENST00000687483.1:ENST00000693339.1:ENST00000689896.1:ENST00000691824.1	lncRNA	lncRNA	lncRNA	lncRNA	11	121	2	1.91087	2.45561	3.00035	0.00255225	0.00109036	0.0466386	0.0303873
chr4	79220252	79220352	1985630	0	+	0.54	(0.515,0.57]	chr4	198605	81	INTRON	INTRON	LINC01088	ENSG00000249307.8	ENST00000671503.1:ENST00000509088.6:ENST00000658852.1:ENST00000651041.1:ENST00000510667.5:ENST00000513153.5:ENST00000515597.1:ENST00000507761.1:ENST00000507476.5:ENST00000512130.5:ENST00000653314.1:ENST00000692734.1:ENST00000437737.3:ENST00000511895.1	lncRNA	lncRNA	lncRNA	lncRNA	6	58	2	1.82113	2.455575	3.09002	0.0118311	0.00491099	0.0962115	0.0609494
chr12	104476417	104476517	5210878	0	+	0.37	(0.35,0.378]	chr12	493315	185	INTRON	INTRON	CHST11	ENSG00000171310.11	ENST00000303694.6:ENST00000547956.1:ENST00000549260.5:ENST00000546689.1	protein_coding	protein_coding	protein_coding	protein_coding	4	64	2	2.36677	2.45549	2.54421	0.0139343	0.00630238	0.0957526	0.0722266
chr6	143172178	143172278	2976301	0	+	0.38	(0.378,0.408]	chr6	279149	66	INTRON	INTRON	AIG1	ENSG00000146416.19	ENST00000367601.8:ENST00000447498.5:ENST00000646199.1:ENST00000357847.9:ENST00000629020.2:ENST00000275235.8:ENST00000494282.6:ENST00000458219.1:ENST00000470265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	63	2	1.51223	2.455475	3.39872	0.051139	0.0019852	0.176696	0.0404516
chr16	31181117	31181214	6340562	0	+	0.618557	(0.57,1]	chr16	608317	5	INTRON	INTRON	FUS	ENSG00000089280.19	ENST00000566605.5:ENST00000254108.12:ENST00000380244.7:ENST00000487045.6:ENST00000487509.6:ENST00000568685.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	34	2	1.91937	2.45542	2.99147	0.0468438	6.75142e-4	0.167716	0.0237705
chr2	108541078	108541178	845912	0	+	0.45	(0.44,0.476]	chr2	94661	61	INTRON	INTRON	LIMS1	ENSG00000169756.17	ENST00000695516.1:ENST00000544547.6:ENST00000695517.1	protein_coding	protein_coding	protein_coding	protein_coding	4	53	2	1.7651	2.455345	3.14559	0.039388	0.00384923	0.143072	0.0562562
chr6	35375520	35375619	2852308	0	+	0.363636	(0.35,0.378]	chr6	269491	280	INTRON	INTRON	PPARD	ENSG00000112033.14	ENST00000418635.6:ENST00000448077.6:ENST00000360694.8:ENST00000311565.4:ENST00000337400.6	protein_coding	protein_coding	protein_coding	protein_coding	7	106	2	2.36666	2.4553000000000003	2.54394	0.0028214	0.00212276	0.0472361	0.0426185
chr5	131782328	131782428	2720598	0	-	0.44	(0.408,0.44]	chr5	255730	373	INTRON	INTRON	FNIP1	ENSG00000217128.13	ENST00000510461.6:ENST00000307954.12:ENST00000307968.11:ENST00000511848.1	protein_coding	protein_coding	protein_coding	protein_coding	9	130	2	1.97721	2.45527	2.93333	0.0121661	4.01252e-5	0.0910127	0.00513517
chr1	108951131	108951231	519053	0	-	0.44	(0.408,0.44]	chr1	60921	8	UTR5	UTR5:EXON_MRNA:INTRON	CLCC1	ENSG00000121940.17	ENST00000690509.1:ENST00000687328.1:ENST00000685014.1:ENST00000685540.1:ENST00000686576.1:ENST00000688070.1:ENST00000691513.1:ENST00000686821.1:ENST00000692511.1:ENST00000689479.1:ENST00000687646.1:ENST00000687998.1:ENST00000687226.1:ENST00000693336.1:ENST00000689991.1:ENST00000687591.1:ENST00000691777.1:ENST00000690756.1:ENST00000688778.1:ENST00000685104.1:ENST00000689103.1:ENST00000687734.1:ENST00000686434.1:ENST00000685497.1:ENST00000691342.1:ENST00000686776.1:ENST00000692342.1:ENST00000689351.1:ENST00000692584.1:ENST00000692775.1:ENST00000687134.1:ENST00000675018.1:ENST00000690781.1:ENST00000691556.1:ENST00000689189.1:ENST00000687099.1:ENST00000685791.1:ENST00000687865.1:ENST00000687449.1:ENST00000688285.1:ENST00000686817.1:ENST00000369968.7:ENST00000674992.1:ENST00000675001.1:ENST00000369969.7:ENST00000356970.6:ENST00000688610.1:ENST00000675128.1:ENST00000693089.1:ENST00000675571.1:ENST00000675650.1:ENST00000369970.8:ENST00000674561.2:ENST00000675451.1:ENST00000675654.1:ENST00000675790.1:ENST00000675584.1:ENST00000692795.1:ENST00000691731.1:ENST00000689359.1:ENST00000676392.2:ENST00000676391.2:ENST00000676454.1:ENST00000674849.1:ENST00000675956.1:ENST00000302500.5:ENST00000675508.1:ENST00000688168.1:ENST00000693673.1:ENST00000692404.1:ENST00000686078.1:ENST00000690874.1:ENST00000692732.1:ENST00000685628.1:ENST00000676306.1:ENST00000676059.2:ENST00000674527.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	118	2	2.13881	2.4551749999999997	2.77154	0.00204027	9.14134e-4	0.041855	0.0278396
chr1	88708910	88709010	156015	0	+	0.36	(0.35,0.378]	chr1	17045	239	INTRON	INTRON	PKN2	ENSG00000065243.20	ENST00000316005.11:ENST00000370521.8:ENST00000370513.9	protein_coding	protein_coding	protein_coding	protein_coding	6	88	2	2.27866	2.455095	2.63153	0.00562761	0.00316333	0.0653997	0.0516574
chr2	144446973	144447073	1241066	0	-	0.34	(0.32,0.35]	chr2	131703	161	INTRON	INTRON	ZEB2	ENSG00000169554.23	ENST00000636471.1:ENST00000627532.3:ENST00000638128.1:ENST00000637304.1:ENST00000636179.1:ENST00000636820.1:ENST00000637045.1:ENST00000419938.5:ENST00000409487.7:ENST00000440875.6:ENST00000636732.2:ENST00000636026.2:ENST00000675069.1:ENST00000689298.1:ENST00000539609.7:ENST00000558170.6:ENST00000303660.8:ENST00000427902.5:ENST00000637267.2:ENST00000392861.6:ENST00000431672.4:ENST00000409211.5:ENST00000465308.5:ENST00000434448.5:ENST00000472146.5:ENST00000461784.3:ENST00000476394.5:ENST00000637591.2:ENST00000479735.1:ENST00000453352.5:ENST00000435831.5:ENST00000444559.5:ENST00000630572.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	99	2	1.72405	2.45508	3.18611	0.0275418	6.68157e-4	0.137011	0.0235847
chr15	50600092	50600191	6172395	0	-	0.424242	(0.408,0.44]	chr15	588282	4	INTRON	INTRON	TRPM7	ENSG00000092439.16	ENST00000646667.1:ENST00000560955.5	protein_coding	protein_coding	protein_coding	protein_coding	5	71	2	1.96534	2.455075	2.94481	0.0216499	0.00110214	0.11491	0.03038
chr7	156864077	156864177	3687727	0	-	0.43	(0.408,0.44]	chr7	342096	268	INTRON	INTRON	LMBR1	ENSG00000105983.23	ENST00000353442.10:ENST00000415428.5:ENST00000454132.5:ENST00000434503.5:ENST00000430278.5:ENST00000434278.5:ENST00000444719.5:ENST00000461469.5:ENST00000414218.1:ENST00000434453.1:ENST00000498034.5:ENST00000433968.5:ENST00000485985.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	71	2	1.96534	2.455075	2.94481	0.0216499	0.00110214	0.11491	0.03038
chr1	71069075	71069175	482903	0	-	0.38	(0.378,0.408]	chr1	57851	4	SS5_PROX	SS5_PROX:INTRON	ZRANB2	ENSG00000132485.14	ENST00000370920.8:ENST00000254821.10:ENST00000487510.1:ENST00000611683.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	69	2	1.58985	2.455005	3.32016	0.0290335	0.00268328	0.141186	0.0464781
chr16	22492425	22492524	6322529	0	+	0.252525	[0,0.28]	chr16	605439	2	INTRON	INTRON	NPIPB5	ENSG00000243716.11	ENST00000415654.5:ENST00000415833.6:ENST00000546168.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	199	2	2.27133	2.455	2.63867	0.00179205	0.00163275	0.0392772	0.0368968
chr13	60159586	60159686	5604332	0	-	0.38	(0.378,0.408]	chr13	535547	262	INTRON	INTRON	DIAPH3	ENSG00000139734.19	ENST00000400324.9:ENST00000377908.6:ENST00000400319.5:ENST00000400320.5:ENST00000267215.8	protein_coding	protein_coding	protein_coding	protein_coding	5	74	2	2.30628	2.454955	2.60363	0.0163339	0.00153353	0.101571	0.0361717
chr1	171593119	171593217	254334	0	+	0.377551	(0.35,0.378]	chr1	30290	14	UTR3	UTR3:EXON_MRNA	PRRC2C	ENSG00000117523.18	ENST00000647382.2:ENST00000367742.7:ENST00000338920.8:ENST00000426496.6:ENST00000495585.1:ENST00000644916.1	protein_coding	protein_coding	protein_coding	protein_coding	21	318	2	2.01665	2.45495	2.89325	8.85255e-4	2.19842e-5	0.0271798	0.00381828
chr16	89804309	89804408	6544695	0	-	0.454545	(0.44,0.476]	chr16	634588	2	INTRON	INTRON	FANCA	ENSG00000187741.16	ENST00000561667.2:ENST00000389301.8:ENST00000568369.6:ENST00000564475.6:ENST00000696275.1:ENST00000696287.1:ENST00000696286.1:ENST00000696274.1:ENST00000696291.1:ENST00000696276.1:ENST00000567205.2:ENST00000567284.7:ENST00000696277.1:ENST00000696292.1:ENST00000563767.2:ENST00000567621.6:ENST00000696288.1:ENST00000696293.1:ENST00000566889.5:ENST00000389302.7:ENST00000696294.1:ENST00000696295.1:ENST00000563673.5:ENST00000543736.5:ENST00000534992.5:ENST00000565582.5:ENST00000696296.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	112	2	1.61203	2.45494	3.29785	0.012463	2.77287e-4	0.0973643	0.0152764
chr1	36062127	36062227	72482	0	+	0.35	(0.32,0.35]	chr1	9249	65	UTR3	UTR3:EXON_MRNA	AGO3	ENSG00000126070.20	ENST00000373191.9	protein_coding	protein_coding	protein_coding	protein_coding	10	133	2	1.4819	2.45491	3.42792	0.0225548	2.20344e-4	0.124921	0.0135673
chr7	6731311	6731396	3274093	0	+	0.329412	(0.32,0.35]	chr7	304500	2	INTRON	INTRON	PMS2CL	ENSG00000187953.10	ENST00000486256.5:ENST00000348899.7	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	3	51	2	1.77704	2.454905	3.13277	0.0719969	0.00458313	0.187322	0.0622676
chr7	132942939	132943039	3644492	0	-	0.35	(0.32,0.35]	chr7	338848	556	INTRON	INTRON	CHCHD3	ENSG00000106554.13	ENST00000262570.10:ENST00000448878.6:ENST00000496427.5:ENST00000423635.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	51	2	1.77704	2.454905	3.13277	0.0719969	0.00458313	0.187322	0.0622676
chr7	157147928	157148027	3454029	0	+	0.343434	(0.32,0.35]	chr7	322895	82	INTRON	INTRON	UBE3C	ENSG00000009335.18	ENST00000611269.4:ENST00000348165.10:ENST00000389103.4:ENST00000430750.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	51	2	1.77704	2.454905	3.13277	0.0719969	0.00458313	0.187322	0.0622676
chr2	64008361	64008461	1139903	0	-	0.46	(0.44,0.476]	chr2	122046	240	INTRON	INTRON	VPS54	ENSG00000143952.20	ENST00000409558.8:ENST00000272322.9	protein_coding	protein_coding	protein_coding	protein_coding	9	125	2	1.8761	2.454895	3.03369	0.0115013	5.18787e-5	0.0889104	0.00587266
chr15	92933452	92933551	6104029	0	+	0.292929	(0.28,0.32]	chr15	581428	40	INTRON	INTRON	ENSG00000279765:CHD2	ENSG00000279765.3:ENSG00000173575.22	ENST00000630790.1:ENST00000626874.2:ENST00000394196.9:ENST00000635856.1:ENST00000420239.7:ENST00000628375.2:ENST00000625990.3:ENST00000626782.2:ENST00000629136.1:ENST00000637572.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	55	2	2.33771	2.4548300000000003	2.57195	0.0331711	0.0142701	0.133994	0.103838
chr2	24505088	24505188	709395	0	+	0.31	(0.28,0.32]	chr2	82200	125	INTRON	INTRON	NCOA1	ENSG00000084676.16	ENST00000348332.8:ENST00000496333.5:ENST00000406961.5:ENST00000469850.5:ENST00000405141.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	55	2	2.33771	2.4548300000000003	2.57195	0.0331711	0.0142701	0.133994	0.103838
chr6	15423845	15423945	2824727	0	+	0.53	(0.515,0.57]	chr6	265204	131	INTRON	INTRON	JARID2	ENSG00000008083.14	ENST00000341776.7:ENST00000397311.4	protein_coding	protein_coding	protein_coding	protein_coding	6	69	2	2.27709	2.454795	2.6325	0.00439001	0.00275782	0.0585064	0.0486216
chr16	23839002	23839102	6323788	0	+	0.44	(0.408,0.44]	chr16	605693	12	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000498058.1:ENST00000645517.1:ENST00000498739.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	15	182	2	1.51668	2.45478	3.39288	0.0140197	4.92452e-6	0.0959618	0.00151046
chr3	196935877	196935971	1900302	0	-	0.43617	(0.408,0.44]	chr3	190327	6	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	NCBP2	ENSG00000114503.11	ENST00000467803.1:ENST00000321256.10:ENST00000447325.5:ENST00000463783.1:ENST00000428425.1:ENST00000427641.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	68	2	1.35739	2.45477	3.55215	0.063317	7.01039e-4	0.177047	0.0241881
chr11	85979384	85979480	5013919	0	-	0.5625	(0.515,0.57]	chr11	472923	8	INTRON	INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000530692.5:ENST00000630913.2:ENST00000529760.5:ENST00000528398.5:ENST00000532603.5:ENST00000356360.9:ENST00000529016.5:ENST00000526961.5:ENST00000530542.1	protein_coding	protein_coding	protein_coding	protein_coding	8	85	2	1.35483	2.45475	3.55467	0.0486665	3.43577e-5	0.154097	0.0046762
chr16	18784547	18784640	6456617	0	-	0.344086	(0.32,0.35]	chr16	622510	10	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	RPS15A	ENSG00000134419.15	ENST00000322989.8:ENST00000572008.5:ENST00000563390.5:ENST00000574723.5:ENST00000576008.5:ENST00000562935.5:ENST00000569365.6:ENST00000576436.5:ENST00000575669.1:ENST00000565420.5:ENST00000563579.1:ENST00000569083.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	51	2	1.94202	2.45474	2.96746	0.0486128	0.00815799	0.153946	0.0810802
chr20	50094615	50094714	7353768	0	-	0.343434	(0.32,0.35]	chr20	749863	100	INTRON	INTRON	UBE2V1	ENSG00000244687.13	ENST00000340309.7:ENST00000371677.7:ENST00000415862.6:ENST00000557021.5:ENST00000617119.4:ENST00000625172.3:ENST00000396059.7:ENST00000371674.8:ENST00000371657.9:ENST00000483534.5:ENST00000492371.6:ENST00000486653.5:ENST00000490555.1:ENST00000493090.5:ENST00000467839.5:ENST00000472923.5:ENST00000432266.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	51	2	1.94202	2.45474	2.96746	0.0486128	0.00815799	0.153946	0.0810802
chr21	46326076	46326176	7421233	0	+	0.34	(0.32,0.35]	chr21	756697	3	SS3_PROX	SS3_PROX:INTRON	PCNT	ENSG00000160299.18	ENST00000466474.6:ENST00000490468.5:ENST00000695525.1:ENST00000695558.1:ENST00000359568.10:ENST00000695526.1:ENST00000480896.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	51	2	1.94202	2.45474	2.96746	0.0486128	0.00815799	0.153946	0.0810802
chr19	40802479	40802574	7070473	0	+	0.378947	(0.378,0.408]	chr19	706570	7	INTRON	INTRON	EGLN2	ENSG00000269858.6	ENST00000303961.9:ENST00000406058.6:ENST00000593726.5:ENST00000597746.5	protein_coding	protein_coding	protein_coding	protein_coding	6	88	2	2.27309	2.45469	2.63629	0.00769587	0.001315	0.0754631	0.0333932
chr6	47626675	47626773	2875077	0	+	0.306122	(0.28,0.32]	chr6	272827	26	UTR3	UTR3:EXON_MRNA	CD2AP	ENSG00000198087.7	ENST00000359314.5	protein_coding	protein_coding	protein_coding	protein_coding	3	55	2	2.08149	2.45459	2.82769	0.031124	0.0169391	0.143644	0.103888
chr1	61111170	61111270	127679	0	+	0.33	(0.32,0.35]	chr1	14770	226	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	NFIA	ENSG00000162599.17	ENST00000371191.5:ENST00000664495.1:ENST00000476646.5:ENST00000407417.7:ENST00000479364.1:ENST00000371189.8:ENST00000670151.1:ENST00000664149.1:ENST00000662015.1:ENST00000403491.8:ENST00000371187.7:ENST00000485903.6:ENST00000371185.6:ENST00000371184.6:ENST00000603233.2:ENST00000496712.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	127	2	2.04388	2.45454	2.8652	0.00723443	4.9686e-4	0.0729826	0.0201536
chr3	25749005	25749105	1642492	0	-	0.35	(0.32,0.35]	chr3	168658	82	INTRON	INTRON	NGLY1	ENSG00000151092.18	ENST00000280700.10:ENST00000428257.5:ENST00000675217.1:ENST00000676225.1:ENST00000493324.5:ENST00000396649.7:ENST00000675178.1:ENST00000675680.1:ENST00000308710.9:ENST00000280699.13:ENST00000674841.1:ENST00000675234.1:ENST00000463611.2:ENST00000417874.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	127	2	2.04388	2.45454	2.8652	0.00723443	4.9686e-4	0.0729826	0.0201536
chr16	71906658	71906758	6386718	0	+	0.29	(0.28,0.32]	chr16	614084	26	INTRON	INTRON	IST1	ENSG00000182149.21	ENST00000568581.5:ENST00000540296.5:ENST00000544564.5:ENST00000541571.6:ENST00000538104.5:ENST00000535424.5:ENST00000606369.5:ENST00000537613.5:ENST00000424485.6:ENST00000566536.5:ENST00000378799.11:ENST00000538565.5:ENST00000329908.12:ENST00000538850.5:ENST00000541918.5:ENST00000378798.9:ENST00000534994.5:ENST00000539186.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	79	2	2.17818	2.454475	2.73077	0.0220748	0.00555379	0.115395	0.0675078
chr17	27106111	27106211	6579886	0	+	0.23	[0,0.28]	chr17	639586	93	INTRON	INTRON	ENSG00000285822	ENSG00000285822.1	ENST00000649401.1	lncRNA	lncRNA	lncRNA	lncRNA	4	76	2	2.13176	2.45446	2.77716	0.022039	0.0135097	0.115395	0.101363
chr2	159714156	159714256	899500	0	+	0.24	[0,0.28]	chr2	99509	2	SS3_PROX	SS3_PROX:INTRON	MARCHF7	ENSG00000136536.15	ENST00000539065.5:ENST00000259050.8:ENST00000409175.6:ENST00000421037.1:ENST00000473749.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	76	2	2.13176	2.45446	2.77716	0.022039	0.0135097	0.115395	0.101363
chr17	66330100	66330200	6662572	0	+	0.43	(0.408,0.44]	chr17	650320	236	INTRON	INTRON	PRKCA	ENSG00000154229.12	ENST00000413366.8:ENST00000578063.5:ENST00000583361.1:ENST00000284384.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	71	2	2.22268	2.45445	2.68622	0.00770925	0.00418848	0.0784002	0.0572071
chr7	72911866	72911966	3330117	0	+	0.43	(0.408,0.44]	chr7	309565	204	INTRON	INTRON	POM121	ENSG00000196313.13	ENST00000627934.3:ENST00000395270.5	protein_coding	protein_coding	protein_coding	protein_coding	5	71	2	2.22268	2.45445	2.68622	0.00770925	0.00418848	0.0784002	0.0572071
chr6	7155286	7155386	2798840	0	+	0.49	(0.476,0.515]	chr6	263733	141	INTRON	INTRON	RREB1	ENSG00000124782.21	ENST00000379933.7:ENST00000491191.5:ENST00000471433.5:ENST00000379938.7:ENST00000467782.5:ENST00000349384.10:ENST00000334984.10:ENST00000475946.5:ENST00000483150.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	67	2	1.36967	2.45431	3.53895	0.0605132	0.00075485700000000005	0.171085	0.0251966
chr20	346103	346203	7302804	0	-	0.33	(0.32,0.35]	chr20	743423	210	INTRON	INTRON	NRSN2-AS1	ENSG00000225377.6	ENST00000442637.2:ENST00000662580.1	lncRNA	lncRNA	lncRNA	lncRNA	2	39	2	2.21917	2.45419	2.68921	0.0641245	0.0230336	0.199279	0.118056
chr21	18685652	18685752	7434659	0	-	0.34	(0.32,0.35]	chr21	758112	730	INTRON	INTRON	MIR548XHG	ENSG00000224141.6	ENST00000671206.1:ENST00000437492.6:ENST00000355189.7:ENST00000653218.1:ENST00000656413.1:ENST00000414582.1	lncRNA	lncRNA	lncRNA	lncRNA	2	39	2	2.21917	2.45419	2.68921	0.0641245	0.0230336	0.199279	0.118056
chr10	50391792	50391891	4618363	0	-	0.292929	(0.28,0.32]	chr10	425422	471	INTRON	INTRON	SGMS1	ENSG00000198964.14	ENST00000429490.5:ENST00000361781.7:ENST00000619438.4:ENST00000492601.2:ENST00000609445.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	143	2	2.08803	2.4541649999999997	2.8203	0.0103533	2.81644e-4	0.085045	0.0149891
chr4	110192450	110192550	2227673	0	-	0.31	(0.28,0.32]	chr4	218024	865	INTRON	INTRON	ELOVL6	ENSG00000170522.10	ENST00000394607.7:ENST00000302274.8:ENST00000514184.5:ENST00000506625.5:ENST00000506461.1:ENST00000503885.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	11	186	2	2.18919	2.4541649999999997	2.71914	0.00148579	8.3869e-4	0.0354835	0.0266487
chr18	2757190	2757287	6865922	0	+	0.360825	(0.35,0.378]	chr18	680135	4	INTRON	INTRON	SMCHD1	ENSG00000101596.17	ENST00000320876.11:ENST00000688342.1:ENST00000693213.1:ENST00000577880.5:ENST00000584897.5:ENST00000686763.1:ENST00000686864.1:ENST00000688708.1:ENST00000645355.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	77	2	2.4077	2.454	2.5003	0.0122026	0.00256148	0.0910127	0.0466761
chr1	227317462	227317556	651711	0	-	0.234043	[0,0.28]	chr1	77115	4	UTR5	UTR5:EXON_MRNA	CDC42BPA	ENSG00000143776.20	ENST00000366766.8:ENST00000366769.7:ENST00000334218.9	protein_coding	protein_coding	protein_coding	protein_coding	35	687	2	2.18447	2.453955	2.72344	8.29228e-4	2.10348e-5	0.0266389	0.00354961
chr11	483763	483862	4719242	0	+	0.484848	(0.476,0.515]	chr11	436026	33	INTRON	INTRON	PTDSS2	ENSG00000174915.12	ENST00000532614.5:ENST00000308020.6:ENST00000531520.5:ENST00000526878.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	70	2	2.01618	2.453915	2.89165	0.0180082	0.00142068	0.106756	0.034662
chr14	81216012	81216112	5935851	0	-	0.27	[0,0.28]	chr14	564160	2	SS5_PROX	SS5_PROX:INTRON	GTF2A1	ENSG00000165417.12	ENST00000553612.6:ENST00000298173.7:ENST00000434192.2:ENST00000556268.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	63	2	1.85666	2.4539	3.05114	0.0660997	0.0075493	0.181924	0.0773151
chr10	118700207	118700307	4703866	0	-	0.38	(0.378,0.408]	chr10	433870	46	INTRON	INTRON	CACUL1	ENSG00000151893.15	ENST00000544392.5:ENST00000369151.8:ENST00000493518.5:ENST00000481360.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	73	2	2.35168	2.453875	2.55607	0.00704647	0.0046563	0.0718189	0.0629753
chr14	96868493	96868593	5811591	0	+	0.4	(0.378,0.408]	chr14	551089	37	EXON_MRNA	EXON_MRNA:INTRON	VRK1	ENSG00000100749.9	ENST00000553683.2:ENST00000680538.1:ENST00000681195.1:ENST00000681524.1:ENST00000680084.1:ENST00000679533.1:ENST00000681598.1:ENST00000679727.1:ENST00000679758.1:ENST00000679977.1:ENST00000680387.1:ENST00000680335.1:ENST00000680683.1:ENST00000681474.1:ENST00000216639.8:ENST00000681363.1:ENST00000681538.1:ENST00000680922.1:ENST00000679903.1:ENST00000681101.1:ENST00000681419.1:ENST00000679941.1:ENST00000680849.1:ENST00000679770.1:ENST00000681493.1:ENST00000681778.1:ENST00000680993.1:ENST00000681355.1:ENST00000681695.1:ENST00000681344.1:ENST00000680007.1:ENST00000679918.1:ENST00000679816.1:ENST00000680756.1:ENST00000681249.1:ENST00000680526.1:ENST00000679365.1:ENST00000680851.1:ENST00000679506.1:ENST00000679650.1:ENST00000679462.1:ENST00000680724.1:ENST00000681061.1:ENST00000681677.1:ENST00000679843.1:ENST00000555067.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	73	2	2.35168	2.453875	2.55607	0.00704647	0.0046563	0.0718189	0.0629753
chr18	2695670	2695766	6865270	0	+	0.28125	(0.28,0.32]	chr18	679986	6	INTRON	INTRON	SMCHD1	ENSG00000101596.17	ENST00000320876.11:ENST00000688342.1:ENST00000684915.1:ENST00000581226.1:ENST00000693213.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	56	2	2.39347	2.4538650000000004	2.51426	0.0504457	0.00781326	0.156383	0.0788246
chr12	132097506	132097606	5250319	0	+	0.33	(0.32,0.35]	chr12	499298	56	INTRON	INTRON	EP400P1	ENSG00000185684.16	ENST00000407361.8:ENST00000446190.5:ENST00000690966.1:ENST00000689047.1:ENST00000454179.7:ENST00000689533.1:ENST00000688036.1:ENST00000688136.1:ENST00000488030.5:ENST00000389560.6:ENST00000689403.1:ENST00000443539.6:ENST00000392352.5:ENST00000539205.5:ENST00000332441.7	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	3	53	2	2.2664	2.4538450000000003	2.64129	0.0222819	0.0199969	0.124303	0.109608
chr1	236799232	236799332	342533	0	+	0.45	(0.44,0.476]	chr1	39810	31	INTRON	INTRON	MTR	ENSG00000116984.15	ENST00000680454.1:ENST00000366577.10:ENST00000674797.2:ENST00000652435.1:ENST00000679569.1:ENST00000650888.1:ENST00000463959.1:ENST00000535889.6:ENST00000651455.1:ENST00000681102.1:ENST00000679842.1:ENST00000681177.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	123	2	2.36073	2.4538	2.54687	0.0011	0.00108744	0.030486	0.0301337
chr15	78896188	78896286	6069793	0	+	0.5	(0.476,0.515]	chr15	578252	9	INTRON	INTRON	MORF4L1	ENSG00000185787.15	ENST00000379535.8:ENST00000331268.9:ENST00000426013.7:ENST00000559345.5:ENST00000561171.5:ENST00000558502.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	53	2	2.20789	2.45378	2.69967	0.0195838	0.00820497	0.109483	0.081115
chr20	31558115	31558214	7253427	0	+	0.393939	(0.378,0.408]	chr20	736659	29	INTRON	INTRON	HM13	ENSG00000101294.18	ENST00000335574.10:ENST00000674240.1:ENST00000340852.9:ENST00000398174.9:ENST00000649820.1:ENST00000466766.2:ENST00000650367.1:ENST00000344042.5:ENST00000649374.1:ENST00000469126.5:ENST00000492709.5:ENST00000469097.5:ENST00000487964.5:ENST00000649583.1:ENST00000460389.5:ENST00000494153.5:ENST00000483310.5:ENST00000472128.5:ENST00000474466.5:ENST00000468559.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	62	2	1.71374	2.45371	3.19368	0.0274158	0.00426861	0.136498	0.0573912
chr19	19422315	19422415	7035512	0	+	0.61	(0.57,1]	chr19	701433	159	INTRON	INTRON	GATAD2A	ENSG00000167491.18	ENST00000494516.6:ENST00000360315.7:ENST00000609040.5:ENST00000417582.6:ENST00000683918.1:ENST00000448576.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	37	2	2.24434	2.4536949999999997	2.66305	0.00677343	0.00327879	0.074225	0.0509077
chr8	129502956	129503056	4060311	0	-	0.47	(0.44,0.476]	chr8	369642	78	INTRON	INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1:ENST00000676273.1:ENST00000667643.1:ENST00000668791.1:ENST00000663716.1:ENST00000663572.1:ENST00000676148.1:ENST00000667962.1:ENST00000674877.1:ENST00000675316.1:ENST00000674656.1:ENST00000446592.7:ENST00000667341.1:ENST00000675186.1:ENST00000652971.1:ENST00000661447.1:ENST00000674863.1:ENST00000675498.1:ENST00000675527.1:ENST00000676108.1:ENST00000657647.1:ENST00000675589.1:ENST00000675913.1:ENST00000675109.1:ENST00000671632.1:ENST00000671311.1:ENST00000676099.1:ENST00000660652.1:ENST00000675522.1:ENST00000675183.1:ENST00000658861.1:ENST00000663991.1:ENST00000675044.1:ENST00000675435.1:ENST00000674639.1:ENST00000676069.1:ENST00000675532.1:ENST00000674762.1:ENST00000523151.6:ENST00000675948.1:ENST00000665364.1:ENST00000657251.1:ENST00000675166.1:ENST00000674883.1:ENST00000675867.1:ENST00000674580.1:ENST00000675393.1:ENST00000520048.1:ENST00000674906.1:ENST00000676030.1:ENST00000670588.1:ENST00000675072.1:ENST00000664936.1:ENST00000652914.1:ENST00000657069.1	lncRNA	lncRNA	lncRNA	lncRNA	14	190	2	2.14521	2.45366	2.76211	9.65666e-4	1.06535e-4	0.0285961	0.00924854
chr6	163479296	163479396	3032358	0	+	0.32	(0.28,0.32]	chr6	282585	4	SS5_PROX	SS5_PROX:INTRON	QKI	ENSG00000112531.17	ENST00000361758.8:ENST00000453779.6:ENST00000275262.11:ENST00000392127.6:ENST00000361752.8:ENST00000361195.6:ENST00000424802.7:ENST00000545607.5:ENST00000544436.5:ENST00000537041.5:ENST00000545346.1:ENST00000544823.5:ENST00000537883.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	132	2	2.40262	2.45362	2.50462	0.0102735	7.45509e-4	0.0850389	0.0250079
chr1	45685911	45685980	440582	0	-	0.449275	(0.44,0.476]	chr1	53367	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GPBP1L1	ENSG00000159592.11	ENST00000290795.7:ENST00000355105.8:ENST00000488278.5:ENST00000480941.1:ENST00000480083.5:ENST00000493083.5:ENST00000460859.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	74	2	1.87325	2.4533750000000003	3.0335	0.0265709	9.65686e-4	0.134088	0.0282401
chr1	1104758	1104857	358697	0	-	0.555556	(0.515,0.57]	chr1	41365	121	INTRON	INTRON	C1orf159	ENSG00000131591.18	ENST00000379339.5:ENST00000379325.7:ENST00000421241.7:ENST00000467751.5:ENST00000477196.5:ENST00000379319.5:ENST00000434641.5:ENST00000482816.5:ENST00000462097.5:ENST00000475119.5:ENST00000472741.5:ENST00000480643.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	55	2	1.94945	2.453355	2.9572600000000002	0.0414068	0.00108918	0.161557	0.0303873
chr12	124791885	124791985	5445851	0	-	0.48	(0.476,0.515]	chr12	521231	3	SS5_PROX	SS5_PROX:INTRON	SCARB1	ENSG00000073060.17	ENST00000339570.9:ENST00000261693.11:ENST00000679605.1:ENST00000681686.1:ENST00000680926.1:ENST00000680556.1:ENST00000680982.1:ENST00000680596.1:ENST00000681555.1:ENST00000415380.6:ENST00000681117.1:ENST00000681499.1:ENST00000538291.5:ENST00000546215.5:ENST00000535005.5:ENST00000679955.1:ENST00000544327.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	53	2	1.61586	2.4533	3.29074	0.0567093	0.00272563	0.185107	0.0467523
chr4	55537706	55537806	2149817	0	-	0.44	(0.408,0.44]	chr4	211545	273	INTRON	INTRON	CLOCK	ENSG00000134852.15	ENST00000513440.6:ENST00000381322.5:ENST00000435527.6:ENST00000506923.5:ENST00000509151.5:ENST00000513033.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	44	2	2.39162	2.45327	2.51492	0.0329839	0.0105837	0.133816	0.0911864
chrX	71537728	71537828	7679993	0	+	0.43	(0.408,0.44]	chrX	786393	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	OGT	ENSG00000147162.14	ENST00000373719.8:ENST00000488174.5:ENST00000373701.7:ENST00000498566.3:ENST00000444774.3:ENST00000455587.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	44	2	2.39162	2.45327	2.51492	0.0329839	0.0105837	0.133816	0.0911864
chr6	13708343	13708443	3059192	0	-	0.47	(0.44,0.476]	chr6	284548	111	INTRON	INTRON	RANBP9	ENSG00000010017.13	ENST00000011619.6	protein_coding	protein_coding	protein_coding	protein_coding	3	44	2	2.44514	2.453245	2.46135	0.0374637	0.0087381	0.140008	0.0845538
chr6	43557040	43557136	3097137	0	-	0.520833	(0.515,0.57]	chr6	290064	7	INTRON	INTRON	XPO5	ENSG00000124571.18	ENST00000265351.12:ENST00000496341.6:ENST00000424378.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	48	2	2.15866	2.45319	2.74772	0.0142192	0.0100547	0.103638	0.0848452
chr12	103947756	103947851	5208523	0	+	0.378947	(0.378,0.408]	chr12	492975	2	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	HSP90B1	ENSG00000166598.16	ENST00000550595.2:ENST00000680899.1:ENST00000680391.1:ENST00000680653.1:ENST00000679779.1:ENST00000680281.1:ENST00000681949.1:ENST00000680989.1:ENST00000614327.2:ENST00000680663.1:ENST00000681172.1:ENST00000681941.1:ENST00000681910.1:ENST00000681704.1:ENST00000299767.10:ENST00000681174.1:ENST00000680370.1:ENST00000679538.1:ENST00000681698.1:ENST00000548462.5:ENST00000680316.1:ENST00000679861.1:ENST00000681245.1:ENST00000680478.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	26	331	2	2.38915	2.45316	2.51717	4.66153e-4	2.50375e-5	0.0199613	0.00392664
chr19	11097843	11097942	7016897	0	+	0.242424	[0,0.28]	chr19	697422	66	INTRON	INTRON	LDLR	ENSG00000130164.14	ENST00000557933.5:ENST00000558518.6:ENST00000545707.5:ENST00000535915.5:ENST00000455727.6:ENST00000557958.1:ENST00000560502.5:ENST00000558013.5:ENST00000252444.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	63	2	2.00649	2.4531549999999998	2.89982	0.040391	0.0158893	0.161534	0.101453
chr18	790168	790267	6940484	0	-	0.454545	(0.44,0.476]	chr18	686525	18	INTRON	INTRON	YES1	ENSG00000176105.14	ENST00000584307.5:ENST00000314574.5:ENST00000577611.1:ENST00000581960.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	45	2	2.24189	2.45311	2.66433	0.0194358	0.0193405	0.119831	0.108861
chr10	101788319	101788418	4680658	0	-	0.626263	(0.57,1]	chr10	431944	4	INTRON	INTRON	OGA	ENSG00000198408.14	ENST00000439817.5:ENST00000361464.8:ENST00000357797.9:ENST00000482611.5:ENST00000494347.5:ENST00000479811.5:ENST00000461645.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	24	2	1.77365	2.4530950000000002	3.13254	0.0670385	0.00310655	0.183051	0.0512344
chr11	68488574	68488674	4817611	0	+	0.58	(0.57,1]	chr11	448907	274	INTRON	INTRON	PPP6R3	ENSG00000110075.15	ENST00000530427.5:ENST00000528635.5:ENST00000529907.5:ENST00000533127.5:ENST00000534534.5:ENST00000529344.5:ENST00000524845.5:ENST00000393800.7:ENST00000265637.8:ENST00000524904.5:ENST00000393801.7:ENST00000265636.9:ENST00000529710.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	24	2	1.77365	2.4530950000000002	3.13254	0.0670385	0.00310655	0.183051	0.0512344
chr4	895676	895770	2093916	0	-	0.638298	(0.57,1]	chr4	206942	10	INTRON	INTRON	GAK	ENSG00000178950.18	ENST00000314167.9:ENST00000511163.5:ENST00000505819.5:ENST00000507580.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	24	2	1.77365	2.4530950000000002	3.13254	0.0670385	0.00310655	0.183051	0.0512344
chr4	102808073	102808172	2213158	0	-	0.383838	(0.378,0.408]	chr4	216743	51	INTRON	INTRON	UBE2D3	ENSG00000109332.20	ENST00000453744.7:ENST00000394804.6:ENST00000618836.4:ENST00000394803.9:ENST00000394801.8:ENST00000343106.9:ENST00000508474.5:ENST00000503742.5:ENST00000321805.11:ENST00000350435.11:ENST00000338145.7:ENST00000349311.12:ENST00000504211.5:ENST00000357194.10:ENST00000505207.5:ENST00000507845.5:ENST00000502404.5:ENST00000508635.5:ENST00000505307.5:ENST00000510129.5:ENST00000508476.5:ENST00000502563.5:ENST00000508238.5:ENST00000514755.5:ENST00000508974.5:ENST00000502690.5:ENST00000510599.5:ENST00000508818.5:ENST00000503418.5:ENST00000508249.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	63	2	1.88729	2.453075	3.01886	0.0532327	7.99379e-4	0.162538	0.0258804
chr4	110095428	110095527	2226701	0	-	0.424242	(0.408,0.44]	chr4	218018	19	INTRON	INTRON	ELOVL6	ENSG00000170522.10	ENST00000394607.7:ENST00000302274.8:ENST00000514184.5:ENST00000506625.5:ENST00000506461.1:ENST00000503885.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	81	2	2.29426	2.45298	2.6117	0.00555224	0.00277178	0.0648867	0.04874
chr5	6630782	6630881	2566756	0	-	0.555556	(0.515,0.57]	chr5	245964	48	INTRON	INTRON	NSUN2	ENSG00000037474.15	ENST00000264670.11:ENST00000504374.5:ENST00000506139.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	46	2	1.91916	2.452965	2.98677	0.0231902	0.00632549	0.118148	0.0722266
chr5	181295395	181295495	2563659	0	+	0.52	(0.515,0.57]	chr5	245346	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ENSG00000274525	ENSG00000274525.1	ENST00000622195.1	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	5	61	2	2.06206	2.452965	2.84387	0.0135396	0.0018149	0.101363	0.0384415
chr2	31998788	31998888	1090999	0	-	0.35	(0.32,0.35]	chr2	116913	356	INTRON	INTRON	MEMO1:DPY30	ENSG00000162959.14:ENSG00000162961.14	ENST00000295065.9:ENST00000446765.5:ENST00000404530.6:ENST00000490459.5:ENST00000426310.6:ENST00000413686.1:ENST00000407893.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	96	2	2.42352	2.452915	2.48231	0.0122807	0.00132969	0.091087	0.0335108
chr18	46094625	46094699	6965466	0	-	0.405405	(0.378,0.408]	chr18	689410	3	SS5_PROX	SS5_PROX:INTRON	ATP5F1A	ENSG00000152234.16	ENST00000398752.11:ENST00000282050.6:ENST00000593152.6:ENST00000586592.5:ENST00000590665.5:ENST00000590156.5:ENST00000592364.5:ENST00000589252.5:ENST00000589869.5:ENST00000590406.5:ENST00000590324.5:ENST00000590448.5:ENST00000592989.1:ENST00000591981.5:ENST00000585650.1:ENST00000591267.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	84	2	2.34975	2.45291	2.55607	0.00704647	0.0021928	0.0718189	0.0435144
chr19	47187871	47187971	7084455	0	+	0.44	(0.408,0.44]	chr19	708804	72	INTRON	INTRON	SAE1	ENSG00000142230.13	ENST00000413379.7:ENST00000270225.12:ENST00000598840.5:ENST00000414294.6:ENST00000660039.1:ENST00000664120.1:ENST00000596995.1:ENST00000392776.3:ENST00000659110.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	44	2	1.88062	2.4528749999999997	3.02513	0.0534548	0.0059965	0.162935	0.0700606
chr3	87862807	87862907	1455713	0	+	0.43	(0.408,0.44]	chr3	153149	403	INTRON	INTRON	HTR1F	ENSG00000179097.7	ENST00000319595.7	protein_coding	protein_coding	protein_coding	protein_coding	3	44	2	1.88062	2.4528749999999997	3.02513	0.0534548	0.0059965	0.162935	0.0700606
chr19	23785047	23785146	7042654	0	+	0.434343	(0.408,0.44]	chr19	702220	11	EXON_LNCRNA	EXON_LNCRNA:INTRON	RPSAP58	ENSG00000288920.1	ENST00000471224.5:ENST00000692590.1:ENST00000475499.2:ENST00000686829.1:ENST00000689525.1:ENST00000691397.1:ENST00000688405.1:ENST00000692739.1:ENST00000687994.1:ENST00000484897.4:ENST00000685013.1:ENST00000685490.1:ENST00000462186.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	44	2	2.00768	2.452815	2.89795	0.035843	0.0110735	0.152216	0.0873897
chr2	39103942	39104042	1102167	0	-	0.43	(0.408,0.44]	chr2	118304	56	INTRON	INTRON	SOS1	ENSG00000115904.15	ENST00000692089.1:ENST00000402219.8:ENST00000690876.1:ENST00000395038.6:ENST00000691229.1:ENST00000689668.1:ENST00000690679.1:ENST00000461545.2:ENST00000451331.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	44	2	2.00768	2.452815	2.89795	0.035843	0.0110735	0.152216	0.0873897
chr7	158757203	158757302	3689079	0	-	0.424242	(0.408,0.44]	chr7	342353	40	INTRON	INTRON	ESYT2	ENSG00000117868.18	ENST00000251527.10:ENST00000275418.13:ENST00000652148.1	protein_coding	protein_coding	protein_coding	protein_coding	3	44	2	2.00768	2.452815	2.89795	0.035843	0.0110735	0.152216	0.0873897
chr14	23032077	23032176	5842424	0	-	0.535354	(0.515,0.57]	chr14	555480	39	INTRON	INTRON	PSMB5	ENSG00000100804.19	ENST00000555895.5:ENST00000361611.11:ENST00000460922.2:ENST00000493471.2:ENST00000425762.2:ENST00000334454.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	92	2	2.10989	2.452805	2.79572	0.00378898	5.08572e-4	0.0542459	0.0202333
chr5	126800986	126801086	2479414	0	+	0.52	(0.515,0.57]	chr5	236699	228	INTRON	INTRON	LMNB1	ENSG00000113368.12	ENST00000460265.5:ENST00000261366.10:ENST00000504788.5:ENST00000472034.5:ENST00000492190.5:ENST00000395354.1:ENST00000463908.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	68	2	1.14264	2.4527900000000002	3.76294	0.0774783	2.08636e-4	0.196285	0.0125926
chr5	105384160	105384260	2696268	0	-	0.51	(0.476,0.515]	chr5	254248	1379	INTRON	INTRON	ENSG00000251574	ENSG00000251574.8	ENST00000503650.1	lncRNA	lncRNA	lncRNA	lncRNA	4	52	2	1.80284	2.45274	3.10264	0.033161	0.00543163	0.145899	0.0645052
chr1	205196492	205196592	622995	0	-	0.46	(0.44,0.476]	chr1	74098	83	INTRON	INTRON	DSTYK	ENSG00000133059.17	ENST00000367162.8:ENST00000367161.7	protein_coding	protein_coding	protein_coding	protein_coding	3	44	2	1.93084	2.452675	2.97451	0.0443175	0.00853825	0.162302	0.0780043
chr18	9108667	9108767	6868653	0	+	0.36	(0.35,0.378]	chr18	680510	33	INTRON	INTRON	NDUFV2	ENSG00000178127.13	ENST00000577703.1:ENST00000318388.11:ENST00000583375.5:ENST00000400033.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	34	489	2	2.30111	2.452645	2.60418	3.41833e-4	5.32309e-6	0.0171605	0.00159388
chr7	100681525	100681621	3587390	0	-	0.583333	(0.57,1]	chr7	334564	22	UTR3	UTR3:EXON_MRNA	GIGYF1	ENSG00000146830.11	ENST00000678049.1:ENST00000646601.1:ENST00000275732.5	protein_coding	protein_coding	protein_coding	protein_coding	4	32	2	2.17026	2.452625	2.73499	0.0220522	0.00237434	0.123836	0.0438057
chr2	167928119	167928219	1259084	0	-	0.47	(0.44,0.476]	chr2	133340	270	INTRON	INTRON	B3GALT1-AS1	ENSG00000235335.3	ENST00000430546.2:ENST00000657553.1:ENST00000670221.1:ENST00000436982.2	lncRNA	lncRNA	lncRNA	lncRNA	17	224	2	2.31895	2.452605	2.58626	1.98081e-4	1.83839e-4	0.0123179	0.0122787
chr1	162571115	162571214	238414	0	+	0.474747	(0.44,0.476]	chr1	28704	44	INTRON	INTRON	UAP1	ENSG00000117143.14	ENST00000367925.6:ENST00000367926.9	protein_coding	protein_coding	protein_coding	protein_coding	6	72	2	1.81921	2.45256	3.08591	0.0142184	0.00481262	0.0960818	0.0638089
chr11	599790	599889	4719813	0	+	0.636364	(0.57,1]	chr11	436204	9	INTRON	INTRON	PHRF1	ENSG00000070047.13	ENST00000264555.10:ENST00000416188.3:ENST00000534320.5:ENST00000413872.6:ENST00000533464.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	24	2	2.23711	2.45256	2.66801	0.0172108	0.0169968	0.110899	0.104099
chr6	152982356	152982456	3249669	0	-	0.66	(0.57,1]	chr6	301948	1	SS5_PROX	SS5_PROX:INTRON	FBXO5	ENSG00000112029.10	ENST00000367241.3:ENST00000229758.8	protein_coding	protein_coding	protein_coding	protein_coding	3	24	2	2.23711	2.45256	2.66801	0.0172108	0.0169968	0.110899	0.104099
chr1	25464276	25464376	48286	0	+	0.26	[0,0.28]	chr1	5949	50	INTRON	INTRON	MACO1	ENSG00000204178.11	ENST00000399766.7:ENST00000374343.5:ENST00000647928.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	63	2	1.89998	2.45248	3.00498	0.0599553	0.00876063	0.169548	0.0846118
chr11	66626964	66627063	4810906	0	+	0.494949	(0.476,0.515]	chr11	447878	4	UTR3	UTR3:EXON_MRNA:INTRON	RBM14-RBM4:RBM14	ENSG00000248643.5:ENSG00000239306.5	ENST00000412278.2:ENST00000393979.3:ENST00000511114.1:ENST00000310137.5:ENST00000421355.1:ENST00000500635.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	29	382	2	2.25641	2.4524	2.64839	2.23277e-4	7.20891e-6	0.0137039	0.00190592
chr2	53958166	53958265	1120450	0	-	0.454545	(0.44,0.476]	chr2	120102	85	INTRON	INTRON	PSME4	ENSG00000068878.15	ENST00000404125.6:ENST00000389993.7:ENST00000481518.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	10	137	2	1.70687	2.452365	3.19786	0.0158463	1.82961e-5	0.101453	0.00327543
chr1	193027955	193027984	612549	0	-	0.172414	[0,0.28]	chr1	72458	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	UCHL5	ENSG00000116750.14	ENST00000367455.8:ENST00000367454.6:ENST00000420791.5:ENST00000367450.7:ENST00000367451.8:ENST00000367449.5:ENST00000367448.5:ENST00000443327.5:ENST00000421683.1	protein_coding	protein_coding	protein_coding	protein_coding	5	105	2	2.27484	2.452345	2.62985	0.0111236	0.00581422	0.0877424	0.068681
chr1	179215647	179215747	592939	0	-	0.41	(0.408,0.44]	chr1	71074	727	INTRON	INTRON	ABL2	ENSG00000143322.21	ENST00000502732.6:ENST00000367623.8:ENST00000507173.5:ENST00000511413.5:ENST00000668691.1:ENST00000392043.4:ENST00000660584.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	60	2	1.79818	2.452295	3.10641	0.020428	0.00555646	0.122109	0.0648867
chr9	131414920	131415019	4217178	0	+	0.373737	(0.35,0.378]	chr9	386720	203	INTRON	INTRON	PRRC2B	ENSG00000288701.1	ENST00000682525.1:ENST00000684596.1:ENST00000683519.1:ENST00000682501.1	protein_coding	protein_coding	protein_coding	protein_coding	8	118	2	2.14824	2.452275	2.75631	0.00327182	0.00113582	0.052643	0.0307499
chr17	78194073	78194171	6682016	0	+	0.428571	(0.408,0.44]	chr17	652698	9	INTRON	INTRON	AFMID	ENSG00000183077.16	ENST00000591256.5:ENST00000409257.10:ENST00000327898.9:ENST00000591952.5:ENST00000588800.5:ENST00000588199.5:ENST00000589107.5:ENST00000592988.5:ENST00000589256.5:ENST00000586542.5:ENST00000586731.1:ENST00000591538.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	118	2	2.25678	2.452185	2.64759	0.0016061	0.00112108	0.0364977	0.030774
chr12	91489520	91489620	5384111	0	-	0.43	(0.408,0.44]	chr12	513479	898	INTRON	INTRON	ENSG00000289605	ENSG00000289605.1	ENST00000685093.1	lncRNA	lncRNA	lncRNA	lncRNA	6	84	2	2.20979	2.4521800000000002	2.69457	0.00496289	0.00331036	0.0615009	0.0527031
chr8	98701570	98701670	3998915	0	-	0.35	(0.32,0.35]	chr8	366070	500	INTRON	INTRON	STK3	ENSG00000104375.17	ENST00000617590.1:ENST00000419617.7:ENST00000523601.5:ENST00000518165.5:ENST00000521649.5:ENST00000424861.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	70	2	1.94202	2.45217	2.96232	0.0486128	0.00118924	0.153946	0.031662
chr9	128516414	128516514	4205506	0	+	0.49	(0.476,0.515]	chr9	384574	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	GLE1	ENSG00000119392.16	ENST00000683748.1:ENST00000684314.1:ENST00000683044.1:ENST00000683905.1:ENST00000684646.1:ENST00000684331.1:ENST00000494417.2:ENST00000309971.9:ENST00000684139.1:ENST00000372770.4:ENST00000683288.1:ENST00000682831.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	55	2	2.09697	2.45213	2.80729	0.0136924	0.0126008	0.0980703	0.0949306
chr11	68497457	68497557	4817700	0	+	0.47	(0.44,0.476]	chr11	448907	363	INTRON	INTRON	PPP6R3	ENSG00000110075.15	ENST00000530427.5:ENST00000528635.5:ENST00000529907.5:ENST00000533127.5:ENST00000534534.5:ENST00000529344.5:ENST00000524845.5:ENST00000393800.7:ENST00000265637.8:ENST00000524904.5:ENST00000393801.7:ENST00000265636.9:ENST00000529710.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	70	2	2.34775	2.45212	2.55649	0.00670547	0.00466011	0.0707084	0.0629753
chr1	28993542	28993642	59750	0	+	0.41	(0.408,0.44]	chr1	7641	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000647918.1:ENST00000646800.1:ENST00000644342.1:ENST00000646189.1:ENST00000482464.6:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000646260.1:ENST00000373798.5:ENST00000644600.1:ENST00000649674.1:ENST00000643173.1:ENST00000343067.9:ENST00000644780.1:ENST00000650265.1:ENST00000648181.1:ENST00000643604.1:ENST00000648891.1:ENST00000373797.2:ENST00000349460.9:ENST00000645184.1:ENST00000645111.1:ENST00000643302.1:ENST00000645999.1:ENST00000642643.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	55	2	2.38928	2.4520999999999997	2.51492	0.0329839	0.0039105	0.133816	0.0569957
chr19	18994823	18994907	7153414	0	-	0.452381	(0.44,0.476]	chr19	723007	5	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SUGP2	ENSG00000064607.17	ENST00000593795.5:ENST00000594773.5:ENST00000337018.10:ENST00000452918.7:ENST00000330854.15:ENST00000601879.5:ENST00000600239.5:ENST00000600377.1:ENST00000597280.5:ENST00000598240.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	135	2	2.1371000000000002	2.452055	2.76701	0.00205988	3.70668e-4	0.0420839	0.0178698
chr1	39861911	39862011	428055	0	-	0.3	(0.28,0.32]	chr1	52020	41	INTRON	INTRON	TRIT1	ENSG00000043514.17	ENST00000316891.10:ENST00000648678.1:ENST00000537440.5:ENST00000372818.5:ENST00000462797.5:ENST00000441669.6:ENST00000495175.6:ENST00000491865.5:ENST00000541099.5:ENST00000492612.6:ENST00000489945.5:ENST00000486825.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	103	2	1.78733	2.45203	3.11673	0.0276087	6.61685e-4	0.123904	0.0232856
chr10	35399171	35399271	4425130	0	+	0.53	(0.515,0.57]	chr10	407905	39	INTRON	INTRON	CCNY	ENSG00000108100.18	ENST00000374706.5:ENST00000490012.6:ENST00000493157.6:ENST00000374704.8:ENST00000265375.13:ENST00000339497.7:ENST00000492478.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	28	2	2.34087	2.451965	2.56306	0.0469761	0.0247751	0.151917	0.131869
chr11	62829089	62829185	4961703	0	-	0.520833	(0.515,0.57]	chr11	467011	11	INTRON	INTRON	STX5	ENSG00000162236.13	ENST00000294179.8:ENST00000377897.8:ENST00000394690.5:ENST00000492066.5:ENST00000491231.5:ENST00000488303.5:ENST00000486437.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	28	2	2.34087	2.451965	2.56306	0.0469761	0.0247751	0.151917	0.131869
chr18	26316394	26316494	6885398	0	+	0.57	(0.515,0.57]	chr18	682490	6	INTRON	INTRON	TAF4B	ENSG00000141384.13	ENST00000269142.10:ENST00000578121.5:ENST00000418698.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	28	2	2.34087	2.451965	2.56306	0.0469761	0.0247751	0.151917	0.131869
chr19	2202879	2202979	6996569	0	+	0.46	(0.44,0.476]	chr19	693472	1	SS5_PROX	SS5_PROX:INTRON	DOT1L	ENSG00000104885.19	ENST00000398665.8:ENST00000686010.1	protein_coding	protein_coding	protein_coding	protein_coding	19	253	2	2.172	2.45196	2.73192	7.45525e-4	1.8127e-5	0.0251072	0.00325466
chr8	105345403	105345503	3837509	0	+	0.29	(0.28,0.32]	chr8	354033	253	INTRON	INTRON	ZFPM2	ENSG00000169946.14	ENST00000518180.1:ENST00000407775.7:ENST00000520492.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	148	2	2.0824	2.451955	2.82151	0.00341865	0.00187193	0.0517761	0.0400851
chr5	137752148	137752248	2728997	0	-	0.33	(0.32,0.35]	chr5	256845	66	UTR3	UTR3:EXON_MRNA	HNRNPA0	ENSG00000177733.7	ENST00000314940.7	protein_coding	protein_coding	protein_coding	protein_coding	5	71	2	1.45026	2.4519349999999998	3.45361	0.0622478	0.00193809	0.194723	0.0399255
chr16	22287750	22287848	6321512	0	+	0.377551	(0.35,0.378]	chr16	605178	39	UTR3	UTR3:EXON_MRNA	EEF2K	ENSG00000103319.12	ENST00000263026.10	protein_coding	protein_coding	protein_coding	protein_coding	5	65	2	1.81955	2.45193	3.08431	0.0194679	0.0065853	0.11986	0.0701901
chr16	84774859	84774959	6410674	0	+	0.49	(0.476,0.515]	chr16	615347	3	SS3_PROX	SS3_PROX:INTRON	USP10	ENSG00000103194.16	ENST00000540269.6:ENST00000219473.12:ENST00000570191.5:ENST00000563048.5:ENST00000569925.1:ENST00000567526.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	84	2	1.48658	2.45193	3.41728	0.0206817	0.00165726	0.122348	0.0369207
chr16	89399346	89399446	6542681	0	-	0.53	(0.515,0.57]	chr16	634250	29	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000647238.1:ENST00000644045.1:ENST00000643147.1:ENST00000644139.1:ENST00000568512.6:ENST00000566973.1:ENST00000562211.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	60	2	2.36534	2.4518950000000004	2.53845	0.00632226	0.00404547	0.0687526	0.0578376
chr2	10198391	10198491	691488	0	+	0.52	(0.515,0.57]	chr2	81110	4	SS3_PROX	SS3_PROX:INTRON	RRM2	ENSG00000171848.16	ENST00000641498.1:ENST00000381786.7	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	5	60	2	2.27116	2.45183	2.6325	0.00601759	0.00439001	0.0700813	0.0585064
chr1	213000912	213001006	634942	0	-	0.234043	[0,0.28]	chr1	75008	1	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	ANGEL2	ENSG00000174606.14	ENST00000366962.8:ENST00000360506.6:ENST00000535388.2:ENST00000473303.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	46	2	2.27119	2.451785	2.63238	0.070351	0.0259691	0.184298	0.133676
chr17	20012350	20012450	6571815	0	+	0.26	[0,0.28]	chr17	639047	13	INTRON	INTRON	SPECC1	ENSG00000128487.19	ENST00000677148.1:ENST00000679048.1:ENST00000678019.1:ENST00000678315.1:ENST00000678321.1:ENST00000676570.1:ENST00000678651.1:ENST00000679049.1:ENST00000472876.5:ENST00000467722.3:ENST00000583528.6:ENST00000680019.1:ENST00000395527.9:ENST00000681593.1:ENST00000680830.1:ENST00000680124.1:ENST00000583482.7:ENST00000679255.1:ENST00000681202.1:ENST00000677914.1:ENST00000578321.2:ENST00000680374.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	46	2	2.27119	2.451785	2.63238	0.070351	0.0259691	0.184298	0.133676
chr3	45728216	45728316	1417441	0	+	0.28	[0,0.28]	chr3	148713	43	INTRON	INTRON	SACM1L	ENSG00000211456.13	ENST00000455997.5:ENST00000418611.5:ENST00000672477.1:ENST00000441228.5:ENST00000389061.10:ENST00000672858.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	46	2	2.27119	2.451785	2.63238	0.070351	0.0259691	0.184298	0.133676
chr1	228084012	228084109	330781	0	+	0.57732000000000006	(0.57,1]	chr1	38111	1	INTRON	INTRON	ARF1	ENSG00000143761.16	ENST00000540651.5:ENST00000272102.10:ENST00000470670.5:ENST00000478424.5:ENST00000470558.5:ENST00000473949.5:ENST00000477451.5:ENST00000478336.5:ENST00000541182.1:ENST00000469235.5:ENST00000473546.1:ENST00000482962.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	43	2	1.79898	2.451705	3.10443	0.0206524	3.67483e-4	0.122348	0.017788000000000002
chr19	21109322	21109422	7039790	0	+	0.38	(0.378,0.408]	chr19	701898	3	SS3_PROX	SS3_PROX:INTRON	ZNF714	ENSG00000160352.16	ENST00000616183.1:ENST00000596053.5:ENST00000618422.1:ENST00000456283.7:ENST00000613286.4:ENST00000425625.5:ENST00000618008.4:ENST00000610902.4:ENST00000620627.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	62	2	1.84831	2.4516649999999998	3.05502	0.0172621	0.00689519	0.111749	0.0717484
chr19	34432680	34432763	7053164	0	+	0.481928	(0.476,0.515]	chr19	703499	4	INTRON	INTRON	UBA2	ENSG00000126261.13	ENST00000607361.5:ENST00000586313.1:ENST00000590048.6:ENST00000246548.9:ENST00000439527.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	13	174	2	2.34803	2.45165	2.55527	9.47213e-4	1.33326e-4	0.0281755	0.00996366
chr2	53872547	53872647	1119539	0	-	0.47	(0.44,0.476]	chr2	119865	17	INTRON	INTRON	PSME4	ENSG00000068878.15	ENST00000404125.6:ENST00000389993.7:ENST00000476586.5:ENST00000466539.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	70	2	2.38763	2.451585	2.51554	0.00777207	0.00394089	0.0757731	0.0573041
chr2	159749103	159749203	899855	0	+	0.5	(0.476,0.515]	chr2	99550	2	SS5_PROX	SS5_PROX:INTRON	MARCHF7	ENSG00000136536.15	ENST00000539065.5:ENST00000259050.8:ENST00000409175.6:ENST00000409591.5:ENST00000461582.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	60	2	1.4553	2.45157	3.44784	0.0623645	0.00113238	0.175357	0.0308465
chr1	89551264	89551363	157665	0	+	0.434343	(0.408,0.44]	chr1	17171	9	INTRON	INTRON	LRRC8B	ENSG00000197147.15	ENST00000330947.7:ENST00000439853.6:ENST00000449440.5:ENST00000640258.1:ENST00000639264.1	protein_coding	protein_coding	protein_coding	protein_coding	3	44	2	1.81572	2.45155	3.08738	0.0626779	0.00478231	0.175915	0.0636201
chr17	46931397	46931493	6620791	0	+	0.427083	(0.408,0.44]	chr17	645707	3	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	GOSR2	ENSG00000108433.17	ENST00000640608.1:ENST00000640792.1:ENST00000640358.1:ENST00000638634.1:ENST00000225567.9:ENST00000623037.2:ENST00000573224.2:ENST00000639985.1:ENST00000576910.7:ENST00000415811.7:ENST00000571658.2:ENST00000639199.1:ENST00000639365.1:ENST00000638892.1:ENST00000640621.1:ENST00000640709.1:ENST00000638838.1:ENST00000638216.1:ENST00000575949.6:ENST00000638579.1:ENST00000638189.1:ENST00000639066.1:ENST00000640051.2:ENST00000638697.1:ENST00000640443.1:ENST00000640269.1:ENST00000640806.1:ENST00000640711.1:ENST00000640007.1:ENST00000638219.1:ENST00000639388.1:ENST00000640495.1:ENST00000638374.1:ENST00000640138.1:ENST00000639287.1:ENST00000571048.1:ENST00000572403.5:ENST00000640068.1:ENST00000570879.2:ENST00000393456.7:ENST00000639031.1:ENST00000640723.1:ENST00000638468.1:ENST00000639713.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	44	2	1.81572	2.45155	3.08738	0.0626779	0.00478231	0.175915	0.0636201
chr4	734293	734384	1908078	0	+	0.582418	(0.57,1]	chr4	191229	2	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	PCGF3	ENSG00000185619.18	ENST00000419774.5:ENST00000362003.9:ENST00000470161.6:ENST00000427463.5:ENST00000482726.5:ENST00000400151.6:ENST00000430644.5:ENST00000484141.5:ENST00000440452.5:ENST00000433814.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	31	2	2.33295	2.451455	2.56996	0.0122896	0.00499145	0.091087	0.0646039
chr10	50396986	50397086	4618415	0	-	0.28	[0,0.28]	chr10	425422	523	INTRON	INTRON	SGMS1	ENSG00000198964.14	ENST00000429490.5:ENST00000361781.7:ENST00000619438.4:ENST00000492601.2:ENST00000609445.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	142	2	2.42502	2.451435	2.47785	0.00674727	0.00186048	0.0711166	0.039946
chr1	78011461	78011560	148895	0	+	0.414141	(0.408,0.44]	chr1	16588	58	INTRON	INTRON	DNAJB4	ENSG00000162616.9	ENST00000487931.1:ENST00000477671.2:ENST00000484662.1:ENST00000426517.1:ENST00000476396.1:ENST00000370763.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	44	2	1.94273	2.4514	2.96007	0.0456237	0.00753901	0.149888	0.0773151
chr7	151510921	151511020	3674836	0	-	0.575758	(0.57,1]	chr7	341207	124	INTRON	INTRON	RHEB	ENSG00000106615.10	ENST00000262187.10:ENST00000472642.5:ENST00000478470.5:ENST00000496004.5:ENST00000470370.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	31	2	2.42282	2.451375	2.47993	0.00879576	0.007207	0.0790073	0.0756278
chr10	70167421	70167473	4640863	0	-	0.480769	(0.476,0.515]	chr10	426915	1	UTR5	UTR5:EXON_MRNA:INTRON	SAR1A	ENSG00000079332.15	ENST00000373242.6:ENST00000373241.9:ENST00000373239.2	protein_coding	protein_coding	protein_coding	protein_coding	7	72	2	1.44561	2.45136	3.45711	0.0359862	0.00140905	0.152355	0.0340865
chr11	649400	649500	4889012	0	-	0.52	(0.515,0.57]	chr11	457682	1	SS5_PROX	SS5_PROX:INTRON	DEAF1	ENSG00000177030.19	ENST00000382409.4:ENST00000527170.5:ENST00000685854.1:ENST00000683307.1:ENST00000528864.6:ENST00000525626.6:ENST00000682936.1:ENST00000690068.1:ENST00000692634.1:ENST00000687329.1:ENST00000686001.1:ENST00000689835.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	50	2	2.32967	2.4513249999999998	2.57298	0.0133671	0.00506495	0.0946278	0.0646039
chr1	54361511	54361611	463312	0	-	0.59	(0.57,1]	chr1	55784	48	INTRON	INTRON	SSBP3	ENSG00000157216.16	ENST00000610401.5:ENST00000357475.9:ENST00000371319.8:ENST00000417664.7:ENST00000533946.6:ENST00000371320.8:ENST00000525990.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	37	2	2.09207	2.45132	2.81057	0.0121228	0.00169295	0.090965	0.0381936
chr2	15515148	15515248	1072700	0	-	0.44	(0.408,0.44]	chr2	114441	34	INTRON	INTRON	NBAS	ENSG00000151779.13	ENST00000281513.10	protein_coding	protein_coding	protein_coding	protein_coding	14	138	2	1.58068	2.451315	3.32195	0.00750063	2.54513e-4	0.0773151	0.0147895
chr1	12617443	12617539	379540	0	-	0.427083	(0.408,0.44]	chr1	44555	2	UTR5	UTR5:EXON_MRNA	DHRS3	ENSG00000162496.9	ENST00000616661.5	protein_coding	protein_coding	protein_coding	protein_coding	61	798	2	2.33141	2.45123	2.57105	1.24308e-5	1.15595e-5	0.00268546	0.00263001
chr19	12941572	12941670	7022500	0	+	0.44898	(0.44,0.476]	chr19	698295	2	INTRON	INTRON	CALR	ENSG00000179218.15	ENST00000316448.10:ENST00000586967.2:ENST00000586760.2:ENST00000680816.1:ENST00000588454.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	18	228	2	2.2731	2.451215	2.62933	2.24471e-4	1.65194e-4	0.01376	0.0111063
chr16	57177527	57177621	6493021	0	-	0.255319	[0,0.28]	chr16	627975	15	INTRON	INTRON	PSME3IP1	ENSG00000172775.17	ENST00000309137.13:ENST00000566077.5:ENST00000569266.5:ENST00000567439.5:ENST00000564108.5:ENST00000562324.5:ENST00000567044.5:ENST00000565458.5:ENST00000562406.5:ENST00000566584.5:ENST00000568671.5:ENST00000565760.5:ENST00000566481.5:ENST00000570184.1:ENST00000566681.1	protein_coding	protein_coding	protein_coding	protein_coding	4	85	2	2.30641	2.451055	2.5957	0.0213596	0.00656974	0.113755	0.0736092
chr12	120197564	120197645	5433272	0	-	0.45679	(0.44,0.476]	chr12	519350	2	UTR5	UTR5:EXON_MRNA:SS3_PROX:INTRON	RPLP0	ENSG00000089157.16	ENST00000392514.9:ENST00000551150.5:ENST00000546989.5:ENST00000313104.9:ENST00000552292.5:ENST00000228306.8:ENST00000552461.5:ENST00000549098.5:ENST00000551258.5:ENST00000546990.5:ENST00000547211.5:ENST00000547475.5:ENST00000547173.5:ENST00000550856.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	33	2	2.29425	2.450995	2.60774	0.0518406	0.0255874	0.176696	0.120269
chr15	66520089	66520189	6050466	0	+	0.46	(0.44,0.476]	chr15	576142	1	SS3_PROX	SS3_PROX:INTRON	ZWILCH	ENSG00000174442.12	ENST00000535141.6:ENST00000613446.4:ENST00000446801.6:ENST00000565627.5:ENST00000564179.5:ENST00000307897.10:ENST00000565960.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	33	2	2.29425	2.450995	2.60774	0.0518406	0.0255874	0.176696	0.120269
chr15	84607483	84607582	6087942	0	+	0.464646	(0.44,0.476]	chr15	579382	7	INTRON	INTRON	ZSCAN2	ENSG00000176371.14	ENST00000540936.1:ENST00000448803.6:ENST00000546148.6:ENST00000358472.3:ENST00000327179.6:ENST00000379358.7:ENST00000485222.2:ENST00000538076.5:ENST00000540894.5:ENST00000541040.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	33	2	2.29425	2.450995	2.60774	0.0518406	0.0255874	0.176696	0.120269
chr17	30871330	30871429	6590833	0	+	0.454545	(0.44,0.476]	chr17	640994	13	INTRON	INTRON	ATAD5	ENSG00000176208.9	ENST00000321990.5:ENST00000578295.5	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay	2	33	2	2.29425	2.450995	2.60774	0.0518406	0.0255874	0.176696	0.120269
chr19	24062931	24063027	7044157	0	+	0.458333	(0.44,0.476]	chr19	702365	19	INTRON	INTRON	ENSG00000268362:ZNF254	ENSG00000268362.6:ENSG00000213096.11	ENST00000664647.1:ENST00000613065.4:ENST00000666101.1:ENST00000653003.1:ENST00000666488.1:ENST00000594934.6:ENST00000654353.1:ENST00000662140.1:ENST00000668060.1:ENST00000660137.1:ENST00000652968.1:ENST00000670905.1:ENST00000658858.1:ENST00000654594.1:ENST00000654372.1:ENST00000652837.1:ENST00000654611.1:ENST00000597683.1:ENST00000671141.1:ENST00000653308.1:ENST00000661386.1:ENST00000668656.1:ENST00000663903.1:ENST00000668169.1:ENST00000663458.1:ENST00000662903.1:ENST00000665638.1:ENST00000668701.1:ENST00000655664.1:ENST00000666861.1:ENST00000664627.1:ENST00000661650.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	2	33	2	2.29425	2.450995	2.60774	0.0518406	0.0255874	0.176696	0.120269
chr12	132823000	132823094	5450163	0	-	0.5	(0.476,0.515]	chr12	522111	3	INTRON	INTRON	GOLGA3:CHFR	ENSG00000090615.16:ENSG00000072609.18	ENST00000204726.9:ENST00000450791.8:ENST00000688114.1:ENST00000691696.1:ENST00000691636.1:ENST00000690897.1:ENST00000456883.7:ENST00000545875.4:ENST00000688251.1:ENST00000686751.1:ENST00000685580.1:ENST00000687165.1:ENST00000692384.1:ENST00000685120.1:ENST00000689813.1:ENST00000693112.1:ENST00000685450.1:ENST00000534967.2:ENST00000537317.2:ENST00000690178.1:ENST00000652603.2:ENST00000541341.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	80	2	1.82595	2.45098	3.07601	0.0202339	5.95211e-4	0.109955	0.0221865
chr10	92999687	92999787	4493151	0	+	0.47	(0.44,0.476]	chr10	413813	3	SS5_PROX	SS5_PROX:INTRON	EXOC6	ENSG00000138190.17	ENST00000671701.1:ENST00000672817.1:ENST00000371552.8:ENST00000443748.6:ENST00000260762.10:ENST00000495132.5:ENST00000458552.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	80	2	2.1923	2.4509499999999997	2.7096	0.0043698	0.00376205	0.0604104	0.0539118
chr22	47766661	47766760	7540722	0	+	0.383838	(0.378,0.408]	chr22	770752	58	INTRON	INTRON	ENSG00000224271	ENSG00000224271.7	ENST00000664761.1:ENST00000650683.1:ENST00000651536.1:ENST00000652656.1:ENST00000652072.1:ENST00000651445.1:ENST00000423737.5:ENST00000650660.1:ENST00000651056.1:ENST00000652611.1:ENST00000652399.1:ENST00000652123.1:ENST00000651311.1:ENST00000652505.1:ENST00000652030.2:ENST00000651403.1:ENST00000652228.1:ENST00000651124.1:ENST00000650972.1:ENST00000651985.1:ENST00000651637.1:ENST00000650924.1:ENST00000651003.1:ENST00000651948.2:ENST00000651293.1:ENST00000651939.1:ENST00000650787.1:ENST00000651517.1:ENST00000651662.1:ENST00000651638.1:ENST00000670853.1:ENST00000652080.1:ENST00000651294.1:ENST00000652164.1:ENST00000651538.1:ENST00000651033.1:ENST00000651584.1	lncRNA	lncRNA	lncRNA	lncRNA	3	46	2	1.89621	2.450945	3.00568	0.0488044	0.00811866	0.173377	0.0766625
chr1	19089477	19089574	385488	0	-	0.371134	(0.35,0.378]	chr1	45644	1	INTRON	INTRON	UBR4	ENSG00000127481.15	ENST00000375254.8:ENST00000375224.1	protein_coding	protein_coding	protein_coding	protein_coding	5	66	2	1.49028	2.450835	3.41139	0.0590834	0.00143263	0.168067	0.0347139
chr15	64467130	64467230	6044153	0	+	0.44	(0.408,0.44]	chr15	575688	59	INTRON	INTRON	ZNF609	ENSG00000180357.10	ENST00000326648.5:ENST00000416172.1	protein_coding	protein_coding	protein_coding	protein_coding	9	119	2	1.62832	2.45068	3.27304	0.0212908	3.96337e-5	0.113423	0.00510383
chr12	94313816	94313916	5388627	0	-	0.27	[0,0.28]	chr12	513788	4	INTRON	INTRON	CEP83	ENSG00000173588.16	ENST00000552632.5:ENST00000397809.10:ENST00000339839.9:ENST00000547232.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	46	2	2.20927	2.45057	2.69187	0.0794763	0.0221271	0.19979	0.123903
chr9	94440584	94440684	4162827	0	+	0.26	[0,0.28]	chr9	379504	2	SS3_PROX	SS3_PROX:INTRON	MFSD14B	ENSG00000148110.17	ENST00000375344.8	protein_coding	protein_coding	protein_coding	protein_coding	2	46	2	2.20927	2.45057	2.69187	0.0794763	0.0221271	0.19979	0.123903
chr21	46267694	46267786	7471242	0	-	0.423913	(0.408,0.44]	chr21	761660	7	EXON_MRNA	EXON_MRNA:INTRON	MCM3AP	ENSG00000160294.11	ENST00000397708.1:ENST00000291688.6:ENST00000486937.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	13	176	2	2.41126	2.450525	2.48979	7.3572e-4	1.94311e-4	0.02495	0.0122003
chr6	99414879	99414973	3166041	0	-	0.255319	[0,0.28]	chr6	295328	3	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	PNISR	ENSG00000132424.17	ENST00000681615.1:ENST00000369239.10:ENST00000647811.1:ENST00000481229.2:ENST00000679525.1:ENST00000681611.1:ENST00000438806.5:ENST00000478777.5:ENST00000492294.5:ENST00000498075.1:ENST00000466057.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	65	2	2.27119	2.45052	2.62985	0.070351	0.00581422	0.184298	0.068681
chr2	53955870	53955970	1120427	0	-	0.37	(0.35,0.378]	chr2	120102	62	INTRON	INTRON	PSME4	ENSG00000068878.15	ENST00000404125.6:ENST00000389993.7:ENST00000481518.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	13	181	2	2.43849	2.4505049999999997	2.46252	0.00430822	9.66252e-5	0.0578073	0.00826486
chr12	111587958	111588057	5413119	0	-	0.464646	(0.44,0.476]	chr12	516941	232	INTRON	INTRON	ATXN2	ENSG00000204842.18	ENST00000642389.2:ENST00000608853.5:ENST00000672613.1:ENST00000673436.1:ENST00000643669.2:ENST00000616825.4:ENST00000389153.10:ENST00000550104.5:ENST00000483311.6:ENST00000672335.1:ENST00000673557.1:ENST00000673283.1:ENST00000673449.1:ENST00000535949.5:ENST00000542287.6:ENST00000644883.1:ENST00000647305.1:ENST00000671792.1:ENST00000392645.6:ENST00000672105.1:ENST00000549455.1:ENST00000548492.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	52	2	1.98146	2.45048	2.9195	0.0186013	0.0102021	0.117264	0.0850389
chr3	185681981	185682081	1884910	0	-	0.38	(0.378,0.408]	chr3	188536	57	INTRON	INTRON	IGF2BP2	ENSG00000073792.16	ENST00000382199.7:ENST00000346192.7:ENST00000457616.6:ENST00000421047.3:ENST00000494906.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	45	2	2.29798	2.45047	2.60296	0.0267851	0.0147606	0.123349	0.106702
chr3	10316789	10316884	1613277	0	-	0.484211	(0.476,0.515]	chr3	166611	10	INTRON	INTRON	SEC13	ENSG00000157020.18	ENST00000350697.8:ENST00000337354.8:ENST00000397109.7:ENST00000397117.5:ENST00000383801.6:ENST00000477547.6:ENST00000397105.7:ENST00000431352.1:ENST00000397102.5:ENST00000397101.5:ENST00000397099.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	11	134	2	1.62152	2.45044	3.27936	0.0138486	3.89817e-5	0.0953077	0.00504677
chr22	21499273	21499373	7560083	0	-	0.55	(0.515,0.57]	chr22	773318	68	INTRON	INTRON	PI4KAP2	ENSG00000183506.17	ENST00000450651.5:ENST00000467443.5:ENST00000479693.1:ENST00000476537.1:ENST00000491562.5	transcribed_unitary_pseudogene	retained_intron	transcribed_unitary_pseudogene	retained_intron:processed_transcript	7	81	2	2.21947	2.450395	2.68132	0.00324198	0.002284	0.0524329	0.0426928
chr4	85612802	85612902	1989870	0	+	0.52	(0.515,0.57]	chr4	198934	81	INTRON	INTRON	ARHGAP24	ENSG00000138639.18	ENST00000395184.6:ENST00000503995.5:ENST00000506421.5:ENST00000509709.1:ENST00000512201.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	50	2	2.27238	2.450275	2.62817	0.0161808	0.004048	0.101453	0.0578376
chr1	91515293	91515361	161260	0	+	0.397059	(0.378,0.408]	chr1	17416	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CDC7	ENSG00000097046.13	ENST00000234626.11:ENST00000428239.5:ENST00000486509.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	45	2	2.11103	2.450245	2.78946	0.0266911	0.0158859	0.134419	0.101453
chr14	21217890	21217990	5834641	0	-	0.39	(0.378,0.408]	chr14	554424	44	INTRON	INTRON	HNRNPC	ENSG00000092199.19	ENST00000336053.10:ENST00000553300.6:ENST00000554969.5:ENST00000556142.5:ENST00000554455.5:ENST00000430246.6:ENST00000553753.5:ENST00000555309.5:ENST00000555914.5:ENST00000557442.5:ENST00000556628.5:ENST00000556513.5:ENST00000555883.5:ENST00000557201.5:ENST00000556897.5:ENST00000420743.6:ENST00000557157.5:ENST00000554539.5:ENST00000554383.5:ENST00000554417.1:ENST00000555215.5:ENST00000555137.5:ENST00000554891.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	45	2	2.11103	2.450245	2.78946	0.0266911	0.0158859	0.134419	0.101453
chr7	127728898	127728998	3403179	0	+	0.42	(0.408,0.44]	chr7	318134	71	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000468166.5:ENST00000465900.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	71	2	2.36185	2.45023	2.53861	0.0133164	0.00202413	0.094512	0.0416117
chr1	36230052	36230152	72987	0	+	0.47	(0.44,0.476]	chr1	9371	42	INTRON	INTRON	THRAP3	ENSG00000054118.15	ENST00000469141.6:ENST00000648638.1:ENST00000354618.10	protein_coding	protein_coding	protein_coding	protein_coding	7	74	2	1.34977	2.4502249999999997	3.55068	0.0522828	7.06861e-4	0.160182	0.0241881
chr8	31085446	31085546	3728459	0	+	0.43	(0.408,0.44]	chr8	346581	2	SS5_PROX	SS5_PROX:INTRON	WRN	ENSG00000165392.11	ENST00000650667.1:ENST00000298139.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	53	2	1.64062	2.45005	3.25948	0.0557275	0.00246454	0.165463	0.0459102
chr16	16541203	16541303	6311274	0	+	0.4	(0.378,0.408]	chr16	604098	412	INTRON	INTRON	ENSG00000260126	ENSG00000260126.2	ENST00000567465.2	lncRNA	lncRNA	lncRNA	lncRNA	4	61	2	2.43657	2.45001	2.46345	0.0106733	0.00827342	0.0861859	0.0813266
chr3	28266472	28266572	1390796	0	+	0.32	(0.28,0.32]	chr3	145643	27	INTRON	INTRON	CMC1	ENSG00000187118.14	ENST00000477739.1:ENST00000423894.5:ENST00000466830.6:ENST00000334841.10:ENST00000418849.2:ENST00000396610.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	90	2	2.12073	2.4499500000000003	2.77917	0.0157269	0.00285651	0.101453	0.0494641
chrX	111699347	111699447	7702200	0	+	0.37	(0.35,0.378]	chrX	788221	93	INTRON	INTRON	ALG13	ENSG00000101901.12	ENST00000487141.5:ENST00000394780.8:ENST00000251943.8:ENST00000610588.4:ENST00000621367.4:ENST00000622997.3:ENST00000624161.3:ENST00000636363.1:ENST00000624881.3:ENST00000495283.5:ENST00000486353.5:ENST00000623144.3:ENST00000470971.5:ENST00000623148.3:ENST00000471924.5:ENST00000436609.5:ENST00000470704.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	88	2	1.78162	2.449925	3.11823	0.0251606	5.25625e-4	0.12011	0.0206013
chr4	76145311	76145382	2164413	0	-	0.197183	[0,0.28]	chr4	213489	1	SS5_PROX	SS5_PROX:INTRON	NUP54	ENSG00000138750.16	ENST00000695546.1:ENST00000695547.1:ENST00000695552.1:ENST00000507257.6:ENST00000264883.8:ENST00000510569.6:ENST00000515460.6:ENST00000695554.1:ENST00000695553.1:ENST00000695551.1:ENST00000695556.1:ENST00000695549.1:ENST00000695550.1:ENST00000695555.1:ENST00000514987.6:ENST00000502850.5:ENST00000508465.6:ENST00000512151.5:ENST00000504173.1:ENST00000695557.1:ENST00000514307.5:ENST00000508583.6:ENST00000506098.5:ENST00000510884.5:ENST00000513352.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	163	2	2.3261	2.4499199999999997	2.57374	0.00538874	0.00121496	0.0643592	0.0322637
chr7	22674323	22674423	3500122	0	-	0.33	(0.32,0.35]	chr7	326683	89	INTRON	INTRON	STEAP1B	ENSG00000105889.16	ENST00000650428.1	protein_coding	processed_transcript	protein_coding	processed_transcript	5	82	2	2.43956	2.449915	2.46027	0.0108973	0.00352597	0.0873034	0.0546236
chr11	68553252	68553350	4818271	0	+	0.357143	(0.35,0.378]	chr11	448965	17	INTRON	INTRON	PPP6R3	ENSG00000110075.15	ENST00000529907.5:ENST00000534534.5:ENST00000524845.5:ENST00000393800.7:ENST00000265637.8:ENST00000524904.5:ENST00000393801.7:ENST00000265636.9:ENST00000529710.5:ENST00000527403.6	protein_coding	protein_coding	protein_coding	protein_coding	6	88	2	1.84611	2.44989	3.05367	0.0204148	7.17897e-4	0.110862	0.0244389
chr17	78150001	78150100	6681718	0	+	0.494949	(0.476,0.515]	chr17	652640	27	INTRON	INTRON	C17orf99	ENSG00000187997.12	ENST00000340363.10:ENST00000586999.2:ENST00000591995.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	100	2	1.9314	2.44982	2.96824	0.00643736	9.98194e-4	0.0697513	0.0290732
chr2	169597595	169597694	906603	0	+	0.444444	(0.44,0.476]	chr2	100021	45	INTRON	INTRON	PPIG	ENSG00000138398.17	ENST00000678088.1:ENST00000677392.1:ENST00000433207.6:ENST00000679324.1:ENST00000414307.6:ENST00000676508.1:ENST00000260970.8:ENST00000678695.1:ENST00000409714.7:ENST00000530152.5:ENST00000677750.1:ENST00000676557.1:ENST00000678721.1:ENST00000462903.6:ENST00000676756.1:ENST00000679107.1:ENST00000678499.1:ENST00000678638.1:ENST00000448752.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	70	2	2.26452	2.4497999999999998	2.63508	0.00654074	0.00501007	0.0735539	0.0618077
chr4	82372718	82372818	2177527	0	-	0.48	(0.476,0.515]	chr4	214153	2	SS5_PROX	SS5_PROX:INTRON	HNRNPD	ENSG00000138668.19	ENST00000313899.12:ENST00000353341.8:ENST00000352301.8:ENST00000513584.1:ENST00000509263.5:ENST00000507010.5:ENST00000515432.1:ENST00000503822.1:ENST00000509107.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	133	2	2.24144	2.44979	2.65814	0.00122866	6.21095e-4	0.0325799	0.0229151
chr22	19113343	19113443	7551924	0	-	0.36	(0.35,0.378]	chr22	771903	235	INTRON	INTRON	DGCR2	ENSG00000070413.20	ENST00000537045.5:ENST00000545799.5:ENST00000263196.12:ENST00000389262.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	78	2	2.26428	2.449775	2.63527	0.00831504	0.00443588	0.0774402	0.061054
chr9	37196545	37196644	4118422	0	+	0.232323	[0,0.28]	chr9	375389	96	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000461038.5:ENST00000488607.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	86	2	2.41169	2.449705	2.48772	0.0125761	0.0122872	0.0970106	0.0926667
chr1	246152072	246152172	677153	0	-	0.49	(0.476,0.515]	chr1	79721	558	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000391836.3:ENST00000453676.5:ENST00000462422.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	80	2	1.78917	2.44969	3.11021	0.022887	5.02606e-4	0.118056	0.020217099999999998
chr2	70283080	70283179	1152500	0	-	0.242424	[0,0.28]	chr2	123121	10	INTRON	INTRON	SNRPG	ENSG00000143977.14	ENST00000272348.7:ENST00000429728.1:ENST00000482975.6:ENST00000438261.5:ENST00000454893.1:ENST00000413456.6:ENST00000449935.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	63	2	1.94204	2.449665	2.95729	0.0544139	0.0101824	0.164972	0.089002
chr13	32521632	32521723	5572678	0	-	0.395604	(0.378,0.408]	chr13	532561	3	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	N4BP2L2	ENSG00000244754.9	ENST00000357505.10:ENST00000399396.7:ENST00000504114.5:ENST00000509076.1:ENST00000446957.6:ENST00000674456.1:ENST00000674161.1:ENST00000674422.1:ENST00000674272.1:ENST00000674452.1:ENST00000674384.1:ENST00000505213.5:ENST00000674219.1:ENST00000267068.5:ENST00000674349.1:ENST00000674428.1:ENST00000503814.2:ENST00000674465.1:ENST00000674421.1:ENST00000674180.1:ENST00000674297.1:ENST00000674293.1:ENST00000674480.1:ENST00000674377.1:ENST00000674437.1:ENST00000674327.1:ENST00000674399.1:ENST00000674196.1:ENST00000674163.1:ENST00000511143.5:ENST00000674484.1:ENST00000475731.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	34	2	2.36428	2.449655	2.53503	0.0441088	0.0319942	0.162255	0.13174
chr2	47801355	47801455	777225	0	+	0.4	(0.378,0.408]	chr2	87434	2	SS5_PROX	SS5_PROX:INTRON	MSH6	ENSG00000116062.18	ENST00000652107.1:ENST00000445503.5:ENST00000614496.4:ENST00000234420.11:ENST00000673637.1:ENST00000540021.6:ENST00000538136.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	34	2	2.36428	2.449655	2.53503	0.0441088	0.0319942	0.162255	0.13174
chr2	177478031	177478129	926953	0	+	0.387755	(0.378,0.408]	chr2	101851	9	INTRON	INTRON	AGPS	ENSG00000018510.18	ENST00000679459.1:ENST00000637633.2:ENST00000680770.1:ENST00000680705.1:ENST00000681752.1:ENST00000681565.1:ENST00000680893.1:ENST00000681032.1:ENST00000679421.1:ENST00000680910.1:ENST00000409888.1:ENST00000642466.2:ENST00000264167.11:ENST00000680155.1:ENST00000679478.1:ENST00000681449.1:ENST00000681891.1:ENST00000681028.1:ENST00000680028.1:ENST00000679994.1:ENST00000680390.1:ENST00000681300.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	34	2	2.36428	2.449655	2.53503	0.0441088	0.0319942	0.162255	0.13174
chr3	160419057	160419157	1544808	0	+	0.38	(0.378,0.408]	chr3	160728	3	SS3_PROX	SS3_PROX:INTRON	SMC4	ENSG00000113810.16	ENST00000357388.8:ENST00000469762.5:ENST00000469858.5:ENST00000462787.5:ENST00000344722.5:ENST00000462668.5:ENST00000484799.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	34	2	2.36428	2.449655	2.53503	0.0441088	0.0319942	0.162255	0.13174
chr5	150496979	150497078	2519793	0	+	0.393939	(0.378,0.408]	chr5	241013	102	INTRON	INTRON	NDST1	ENSG00000070614.15	ENST00000522491.1:ENST00000519157.1:ENST00000524161.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	34	2	2.36428	2.449655	2.53503	0.0441088	0.0319942	0.162255	0.13174
chr19	18576582	18576679	7033266	0	+	0.371134	(0.35,0.378]	chr19	700945	15	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	UBA52	ENSG00000221983.8	ENST00000442744.7:ENST00000599595.5	protein_coding	protein_coding	protein_coding	protein_coding	10	124	2	1.44681	2.449605	3.4524	0.0247768	1.6322e-4	0.131872	0.0116917
chr7	151095433	151095533	3448441	0	+	0.54	(0.515,0.57]	chr7	322165	45	INTRON	INTRON	AGAP3	ENSG00000133612.19	ENST00000490097.5:ENST00000463381.5:ENST00000397238.7:ENST00000622464.4:ENST00000479901.5:ENST00000473312.5:ENST00000469901.5:ENST00000476375.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	76	2	1.97876	2.449605	2.92045	0.00610685	0.00128922	0.0706941	0.0328334
chr7	139383736	139383836	3437834	0	+	0.51	(0.476,0.515]	chr7	320340	72	INTRON	INTRON	LUC7L2:FMC1-LUC7L2	ENSG00000146963.18:ENSG00000269955.2	ENST00000541170.7:ENST00000541515.3:ENST00000608368.5:ENST00000619796.4:ENST00000354926.9:ENST00000456182.5:ENST00000263545.7:ENST00000463912.5:ENST00000498518.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	119	2	1.8109	2.4495999999999998	3.0883	0.00417555	7.31567e-4	0.0591344	0.0248722
chr1	174501143	174501243	260543	0	+	0.33	(0.32,0.35]	chr1	30824	517	INTRON	INTRON	RABGAP1L	ENSG00000152061.24	ENST00000357444.10:ENST00000251507.8:ENST00000681986.1:ENST00000367690.5:ENST00000526253.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	56	2	2.40308	2.44959	2.4961	0.0417732	0.00967886	0.161736	0.0828038
chr14	101777331	101777431	5818651	0	+	0.49	(0.476,0.515]	chr14	551819	104	INTRON	INTRON	PPP2R5C	ENSG00000078304.20	ENST00000694906.1:ENST00000422945.6:ENST00000554442.5:ENST00000556068.5:ENST00000328724.9:ENST00000554504.1:ENST00000553890.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	70	2	2.41121	2.4495500000000003	2.48789	0.0110342	0.00256502	0.0873897	0.0466761
chr11	114449975	114450051	4869080	0	+	0.460526	(0.44,0.476]	chr11	454428	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	REXO2	ENSG00000076043.11	ENST00000265881.10:ENST00000539754.5:ENST00000539275.5:ENST00000543131.5:ENST00000539119.5:ENST00000544827.5:ENST00000546316.5:ENST00000539788.5:ENST00000538403.5:ENST00000538791.3:ENST00000544507.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	134	2	1.92491	2.44955	2.97419	0.00301776	3.31666e-4	0.0507519	0.0168836
chr1	100398223	100398323	173087	0	+	0.52	(0.515,0.57]	chr1	18824	70	INTRON	INTRON	CDC14A	ENSG00000079335.20	ENST00000646665.1:ENST00000644844.1:ENST00000635056.2:ENST00000647005.1:ENST00000647203.1:ENST00000644676.1:ENST00000361544.11:ENST00000370124.8:ENST00000336454.5:ENST00000644813.1:ENST00000455467.6:ENST00000646563.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	60	2	2.22166	2.4494949999999998	2.67733	0.00735516	0.00366712	0.0765982	0.0535094
chr15	57987117	57987217	6186740	0	-	0.39	(0.378,0.408]	chr15	589736	209	INTRON	INTRON	ALDH1A2	ENSG00000128918.15	ENST00000537372.5:ENST00000249750.9:ENST00000347587.7:ENST00000430119.6:ENST00000558231.5:ENST00000559517.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	46	2	2.11194	2.4494949999999998	2.78705	0.0292534	0.0135539	0.128055	0.101363
chr10	96908646	96908746	4503735	0	+	0.34	(0.32,0.35]	chr10	414561	5	INTRON	INTRON	LCOR	ENSG00000196233.14	ENST00000676067.1:ENST00000676257.1:ENST00000676187.1:ENST00000675151.1:ENST00000675687.1:ENST00000675251.1:ENST00000676123.1:ENST00000371103.8:ENST00000675471.1:ENST00000421806.4:ENST00000675902.1:ENST00000540664.6:ENST00000676414.1:ENST00000675537.1:ENST00000675117.1:ENST00000675125.1:ENST00000356016.7:ENST00000371097.8:ENST00000676381.1:ENST00000674796.1:ENST00000674725.1:ENST00000675971.1:ENST00000676373.1:ENST00000493486.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	51	2	2.4458	2.44943	2.45306	0.0425977	0.00916394	0.148082	0.0855292
chr5	139327274	139327372	2499734	0	+	0.316327	(0.28,0.32]	chr5	238978	6	INTRON	INTRON	MATR3	ENSG00000280987.4:ENSG00000015479.20	ENST00000509990.5:ENST00000361059.7:ENST00000394800.6:ENST00000502929.5:ENST00000504203.5:ENST00000502499.5:ENST00000510056.5:ENST00000394805.8:ENST00000503811.5:ENST00000618441.5:ENST00000505625.5:ENST00000502422.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	55	2	2.38391	2.449395	2.51488	0.0380957	0.0122525	0.141678	0.0969406
chr7	75525804	75525904	3559128	0	-	0.3	(0.28,0.32]	chr7	331604	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	PMS2P3	ENSG00000127957.19	ENST00000693762.1:ENST00000394921.8:ENST00000430602.5:ENST00000418756.5:ENST00000437568.6:ENST00000533167.5:ENST00000691440.1:ENST00000422064.1:ENST00000438326.2	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript	6	108	2	2.17756	2.449395	2.72123	0.0130851	0.00112621	0.0934394	0.0308424
chr9	100344787	100344885	4309091	0	-	0.418367	(0.408,0.44]	chr9	395880	41	INTRON	INTRON	TEX10	ENSG00000136891.14	ENST00000535814.5:ENST00000374902.9:ENST00000429235.1	protein_coding	protein_coding	protein_coding	protein_coding	11	145	2	2.31293	2.44938	2.58583	9.38868e-4	5.42483e-4	0.0280776	0.0211288
chr6	16146075	16146161	2825949	0	+	0.511628	(0.476,0.515]	chr6	265335	4	INTRON	INTRON	MYLIP	ENSG00000007944.15	ENST00000356840.8:ENST00000349606.4	protein_coding	protein_coding	protein_coding	protein_coding	5	72	2	2.4132	2.4493549999999997	2.48551	0.00756632	0.00417094	0.0773151	0.0570595
chr7	129487114	129487212	3412107	0	+	0.489796	(0.476,0.515]	chr7	319005	14	UTR3	UTR3:EXON_MRNA	STRIP2	ENSG00000128578.10	ENST00000249344.7	protein_coding	protein_coding	protein_coding	protein_coding	5	72	2	2.4132	2.4493549999999997	2.48551	0.00756632	0.00417094	0.0773151	0.0570595
chr1	50785103	50785203	450501	0	-	0.34	(0.32,0.35]	chr1	54249	400	INTRON	INTRON	FAF1	ENSG00000185104.21	ENST00000396153.7:ENST00000487898.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	85	2	1.97654	2.44929	2.92204	0.0199113	0.00202818	0.120668	0.04086
chr17	78776109	78776209	6845774	0	-	0.38	(0.378,0.408]	chr17	677345	393	INTRON	INTRON	CYTH1	ENSG00000108669.17	ENST00000589296.5:ENST00000361101.8:ENST00000446868.8:ENST00000591455.5:ENST00000591574.5:ENST00000592497.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	85	2	2.06872	2.449195	2.82967	0.00895678	0.00189968	0.0800073	0.0402736
chr3	157156140	157156238	1844662	0	-	0.336735	(0.32,0.35]	chr3	185659	16	INTRON	INTRON	CCNL1	ENSG00000163660.12	ENST00000461804.5:ENST00000295926.8:ENST00000631619.1:ENST00000475298.5:ENST00000470121.5:ENST00000476367.5:ENST00000477127.5:ENST00000478454.5:ENST00000479596.5:ENST00000465947.5:ENST00000467081.1:ENST00000464575.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	15	227	2	1.56364	2.44917	3.3347	0.0156266	4.4539e-6	0.101393	0.00142022
chr2	111470287	111470387	1211557	0	-	0.37	(0.35,0.378]	chr2	128917	3	SS3_PROX	SS3_PROX:INTRON	MIR4435-2HG	ENSG00000172965.17	ENST00000645030.2:ENST00000642191.1:ENST00000673798.1:ENST00000645051.2:ENST00000673649.1:ENST00000669658.1:ENST00000669917.1:ENST00000661559.1:ENST00000653687.1:ENST00000667670.1:ENST00000609220.2:ENST00000656760.1:ENST00000609902.6:ENST00000666683.1:ENST00000674070.1:ENST00000662335.1:ENST00000664422.1:ENST00000673775.1:ENST00000674092.1:ENST00000673958.1:ENST00000658936.1:ENST00000662635.1:ENST00000666204.1:ENST00000659458.1:ENST00000664443.1:ENST00000670295.1:ENST00000661655.1:ENST00000666390.1:ENST00000659079.1:ENST00000660442.1:ENST00000664009.1:ENST00000439362.6:ENST00000654473.1:ENST00000664999.1:ENST00000673728.1:ENST00000659791.1:ENST00000666144.1:ENST00000659933.1:ENST00000670715.1:ENST00000653568.1:ENST00000643013.1:ENST00000673866.1:ENST00000443467.6:ENST00000669875.1:ENST00000673653.1:ENST00000673988.1:ENST00000661945.1:ENST00000669515.1:ENST00000431385.6:ENST00000656416.1:ENST00000674037.1:ENST00000432818.5:ENST00000674013.1:ENST00000444301.5:ENST00000673964.1:ENST00000673845.1:ENST00000673756.1:ENST00000673960.1:ENST00000673804.1:ENST00000673632.1:ENST00000453478.2:ENST00000673937.1:ENST00000673654.1:ENST00000409569.2:ENST00000674087.1:ENST00000419736.5:ENST00000673840.1:ENST00000674045.1:ENST00000673821.1:ENST00000643766.1:ENST00000308604.5:ENST00000604981.5:ENST00000673894.1:ENST00000442293.5:ENST00000441075.1:ENST00000673878.1:ENST00000439494.1	lncRNA	lncRNA	lncRNA	lncRNA	7	101	2	2.01993	2.44914	2.87835	0.00730316	0.00160563	0.073467	0.0367961
chr7	116865540	116865640	3385392	0	+	0.43	(0.408,0.44]	chr7	317031	25	INTRON	INTRON	CAPZA2	ENSG00000198898.15	ENST00000464223.5:ENST00000484325.1:ENST00000414148.6:ENST00000361183.8:ENST00000449080.5:ENST00000639546.1:ENST00000426421.5:ENST00000490693.5:ENST00000417431.5:ENST00000461878.5:ENST00000466023.1:ENST00000464669.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	72	2	2.29777	2.449125	2.60048	0.0067764	0.00484324	0.0711802	0.0640618
chr13	102804557	102804657	5532921	0	+	0.52	(0.515,0.57]	chr13	528831	1	SS3_PROX	SS3_PROX:INTRON	BIVM	ENSG00000134897.14	ENST00000257336.6:ENST00000651008.1:ENST00000651949.1:ENST00000652006.1:ENST00000651855.1:ENST00000651048.1:ENST00000448849.3:ENST00000652766.1:ENST00000652643.1:ENST00000651228.1:ENST00000651808.1:ENST00000491929.1:ENST00000474443.2:ENST00000652084.1:ENST00000481069.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	38	2	2.15051	2.449115	2.74772	0.0238113	0.0142192	0.118889	0.103638
chr17	57271010	57271109	6632892	0	+	0.545455	(0.515,0.57]	chr17	648001	26	INTRON	INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000581776.5:ENST00000581523.5:ENST00000674961.1:ENST00000582453.5:ENST00000675656.1:ENST00000322684.7:ENST00000579590.5:ENST00000579531.5:ENST00000676073.1:ENST00000675822.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	38	2	2.15051	2.449115	2.74772	0.0238113	0.0142192	0.118889	0.103638
chr20	35544905	35545005	7262715	0	+	0.54	(0.515,0.57]	chr20	737988	11	EXON_MRNA	EXON_MRNA:INTRON	ERGIC3	ENSG00000125991.21	ENST00000357394.8:ENST00000447986.5:ENST00000348547.7:ENST00000438317.5:ENST00000279052.10:ENST00000416206.5:ENST00000413587.5:ENST00000461043.6:ENST00000496172.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	38	2	2.15051	2.449115	2.74772	0.0238113	0.0142192	0.118889	0.103638
chr1	52863580	52863680	105118	0	+	0.39	(0.378,0.408]	chr1	13741	2	SS3_PROX	SS3_PROX:INTRON	ZYG11A	ENSG00000203995.10	ENST00000371532.5:ENST00000612017.4:ENST00000371528.2	protein_coding	protein_coding	protein_coding	protein_coding	4	54	2	1.89251	2.449095	3.00568	0.0251428	0.00811866	0.133404	0.0766625
chr6	159788954	159789041	3254700	0	-	0.563218	(0.515,0.57]	chr6	302553	2	EXON_LNCRNA	EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TCP1	ENSG00000120438.12	ENST00000321394.12:ENST00000544255.5:ENST00000420894.6:ENST00000392168.6:ENST00000539756.1:ENST00000543532.5:ENST00000538530.5:ENST00000538128.5:ENST00000543517.5:ENST00000537390.5:ENST00000536607.1:ENST00000546023.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	78	2	2.02187	2.449065	2.87626	0.0055814	0.00136224	0.0649993	0.0339121
chr1	193041649	193041749	612691	0	-	0.31	(0.28,0.32]	chr1	72474	116	INTRON	INTRON	UCHL5	ENSG00000116750.14	ENST00000367455.8:ENST00000367454.6:ENST00000367450.7:ENST00000367451.8:ENST00000367449.5:ENST00000367448.5:ENST00000421683.1	protein_coding	protein_coding	protein_coding	protein_coding	3	55	2	2.0243	2.4490600000000002	2.87382	0.0364967	0.014868	0.153759	0.0989021
chr2	176302057	176302156	925542	0	+	0.292929	(0.28,0.32]	chr2	101681	38	INTRON	INTRON	MTX2	ENSG00000128654.14	ENST00000420864.5:ENST00000249442.11:ENST00000423461.6:ENST00000443241.5:ENST00000452865.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	55	2	2.0243	2.4490600000000002	2.87382	0.0364967	0.014868	0.153759	0.0989021
chr7	131465486	131465582	3417836	0	+	0.302083	(0.28,0.32]	chr7	319268	7	INTRON	INTRON	MKLN1	ENSG00000128585.18	ENST00000421797.6:ENST00000352689.11:ENST00000494785.5:ENST00000458153.5:ENST00000498778.5:ENST00000497746.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	55	2	2.0243	2.4490600000000002	2.87382	0.0364967	0.014868	0.153759	0.0989021
chr11	65443742	65443842	4805980	0	+	0.56	(0.515,0.57]	chr11	446554	211	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	72	763	2	2.27107	2.449045	2.62702	7.29829e-6	2.95907e-6	0.00191858	0.00120829
chr20	5605136	5605234	7312286	0	-	0.295918	(0.28,0.32]	chr20	744619	3	INTRON	INTRON	GPCPD1	ENSG00000125772.14	ENST00000379019.7:ENST00000481690.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	58	2	2.18975	2.44903	2.70831	0.0776042	0.00378444	0.196285	0.0562562
chr10	3127032	3127130	4382144	0	+	0.581633	(0.57,1]	chr10	404152	14	INTRON	INTRON	PFKP	ENSG00000067057.18	ENST00000381125.9:ENST00000381075.7:ENST00000678206.1:ENST00000678089.1:ENST00000676796.1:ENST00000415005.6:ENST00000413079.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	18	2	2.36411	2.44897	2.53383	0.0408868	0.02547	0.161534	0.12011
chr10	73096665	73096765	4647845	0	-	0.65	(0.57,1]	chr10	427559	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	P4HA1	ENSG00000122884.13	ENST00000394890.7:ENST00000307116.6:ENST00000373008.6:ENST00000440381.5:ENST00000263556.3	protein_coding	protein_coding	protein_coding	protein_coding	2	18	2	2.36411	2.44897	2.53383	0.0408868	0.02547	0.161534	0.12011
chr17	35635048	35635147	6600025	0	+	0.585859	(0.57,1]	chr17	642282	70	INTRON	INTRON	AP2B1	ENSG00000006125.18	ENST00000616784.4:ENST00000621914.4:ENST00000620039.4:ENST00000616681.4:ENST00000621668.4:ENST00000610402.5:ENST00000612035.4:ENST00000614600.4:ENST00000612116.5:ENST00000618940.4:ENST00000619183.1:ENST00000588116.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	18	2	2.36411	2.44897	2.53383	0.0408868	0.02547	0.161534	0.12011
chr17	82933647	82933745	6696084	0	+	0.581633	(0.57,1]	chr17	655098	4	INTRON	INTRON	TBCD	ENSG00000141556.22	ENST00000682479.1:ENST00000682722.1:ENST00000684464.1:ENST00000684544.1:ENST00000681983.1:ENST00000684361.1:ENST00000683184.1:ENST00000683282.1:ENST00000684408.1:ENST00000355528.9:ENST00000683444.1:ENST00000684776.1:ENST00000683041.1:ENST00000684760.1:ENST00000684349.1:ENST00000682213.1:ENST00000539345.6:ENST00000684000.1:ENST00000684188.1:ENST00000684429.1:ENST00000682610.1:ENST00000683821.1:ENST00000682654.1:ENST00000683584.1:ENST00000682099.1:ENST00000684559.1:ENST00000683839.1:ENST00000682315.1:ENST00000576677.6:ENST00000574886.2:ENST00000577051.1:ENST00000575132.5:ENST00000576603.5:ENST00000573364.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	18	2	2.36411	2.44897	2.53383	0.0408868	0.02547	0.161534	0.12011
chr3	138821319	138821419	1831366	0	-	0.62	(0.57,1]	chr3	184062	244	INTRON	INTRON	PIK3CB	ENSG00000051382.9	ENST00000674063.1:ENST00000477593.5:ENST00000462898.5:ENST00000483968.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	18	2	2.36411	2.44897	2.53383	0.0408868	0.02547	0.161534	0.12011
chr6	53091371	53091467	2877818	0	+	0.572917	(0.57,1]	chr6	273155	6	EXON_MRNA	EXON_MRNA:INTRON	FBXO9	ENSG00000112146.17	ENST00000370939.7:ENST00000323557.12:ENST00000244426.10:ENST00000480463.6:ENST00000484812.1:ENST00000474457.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	18	2	2.36411	2.44897	2.53383	0.0408868	0.02547	0.161534	0.12011
chr7	74664965	74665065	3335319	0	+	0.59	(0.57,1]	chr7	310340	65	INTRON	INTRON	GTF2I	ENSG00000263001.8	ENST00000650807.1:ENST00000690345.1:ENST00000613513.1:ENST00000573035.6:ENST00000614986.4:ENST00000620879.4:ENST00000621734.4:ENST00000443166.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	18	2	2.36411	2.44897	2.53383	0.0408868	0.02547	0.161534	0.12011
chr7	158782934	158783033	3689342	0	-	0.585859	(0.57,1]	chr7	342393	92	INTRON	INTRON	ESYT2	ENSG00000117868.18	ENST00000251527.10:ENST00000275418.13:ENST00000652148.1:ENST00000483958.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	18	2	2.36411	2.44897	2.53383	0.0408868	0.02547	0.161534	0.12011
chr9	72364161	72364253	4266274	0	-	0.619565	(0.57,1]	chr9	392645	7	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	ZFAND5	ENSG00000107372.13	ENST00000376962.10:ENST00000237937.7:ENST00000376960.8:ENST00000488164.5:ENST00000343431.6:ENST00000376956.3:ENST00000487330.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	18	2	2.36411	2.44897	2.53383	0.0408868	0.02547	0.161534	0.12011
chr9	131738499	131738595	4363896	0	-	0.604167	(0.57,1]	chr9	401286	11	INTRON	INTRON	RAPGEF1	ENSG00000107263.19	ENST00000372195.5:ENST00000683357.1:ENST00000438647.3	protein_coding	protein_coding	protein_coding	protein_coding	2	18	2	2.36411	2.44897	2.53383	0.0408868	0.02547	0.161534	0.12011
chrX	153708551	153708651	7910880	0	-	0.6	(0.57,1]	chrX	805086	32	INTRON	INTRON	BCAP31	ENSG00000185825.17	ENST00000345046.12:ENST00000458587.8:ENST00000647529.1:ENST00000645377.1:ENST00000672675.1:ENST00000442093.5:ENST00000429550.5:ENST00000416815.5:ENST00000423827.5:ENST00000430088.1	protein_coding	protein_coding	protein_coding	protein_coding	2	18	2	2.36411	2.44897	2.53383	0.0408868	0.02547	0.161534	0.12011
chr12	91556253	91556353	5384779	0	-	0.34	(0.32,0.35]	chr12	513485	490	INTRON	INTRON	ENSG00000289605	ENSG00000289605.1	ENST00000685093.1	lncRNA	lncRNA	lncRNA	lncRNA	3	51	2	1.95271	2.448905	2.9451	0.0431213	0.011051	0.162255	0.0873897
chr22	19838149	19838249	7555461	0	-	0.35	(0.32,0.35]	chr22	772443	164	INTRON	INTRON	GNB1L	ENSG00000185838.14	ENST00000329517.11:ENST00000403325.5:ENST00000405009.5:ENST00000460402.5:ENST00000481086.1:ENST00000453108.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	51	2	1.95271	2.448905	2.9451	0.0431213	0.011051	0.162255	0.0873897
chr5	36896884	36896984	2338631	0	+	0.33	(0.32,0.35]	chr5	225949	105	INTRON	INTRON	NIPBL	ENSG00000164190.19	ENST00000282516.13:ENST00000448238.2:ENST00000652901.1	protein_coding	protein_coding	protein_coding	protein_coding	3	51	2	1.95271	2.448905	2.9451	0.0431213	0.011051	0.162255	0.0873897
chr7	103146262	103146361	3592867	0	-	0.515152	(0.476,0.515]	chr7	335302	171	INTRON	INTRON	NAPEPLD	ENSG00000161048.12	ENST00000341533.8:ENST00000465647.6:ENST00000417955.5:ENST00000422589.5:ENST00000427257.5:ENST00000418294.1:ENST00000479761.1:ENST00000425379.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	43	2	2.19809	2.44888	2.69967	0.020317	0.0195838	0.121522	0.109483
chr3	99840238	99840338	1462124	0	+	0.58	(0.57,1]	chr3	153488	218	INTRON	INTRON	CMSS1	ENSG00000184220.12	ENST00000463526.1:ENST00000421999.8:ENST00000491299.5:ENST00000496116.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	31	2	2.37366	2.448855	2.52405	0.0263139	0.00373392	0.133676	0.0535844
chr1	151437132	151437231	554735	0	-	0.494949	(0.476,0.515]	chr1	65538	59	INTRON	INTRON	POGZ	ENSG00000143442.22	ENST00000271715.7:ENST00000358476.7:ENST00000392723.5:ENST00000368863.6:ENST00000409503.5:ENST00000531094.5:ENST00000491586.5:ENST00000485040.5:ENST00000467287.5:ENST00000533461.5:ENST00000533351.5:ENST00000450842.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	43	2	2.13304	2.44882	2.7646	0.024866	0.0162075	0.132101	0.101453
chr16	1849050	1849149	6430117	0	-	0.484848	(0.476,0.515]	chr16	618357	37	INTRON	INTRON	MEIOB	ENSG00000162039.17	ENST00000325962.9:ENST00000470044.5:ENST00000397344.7:ENST00000496541.6	protein_coding	protein_coding	protein_coding	protein_coding	3	43	2	2.13304	2.44882	2.7646	0.024866	0.0162075	0.132101	0.101453
chr1	1476773	1476873	1615	0	+	0.56	(0.515,0.57]	chr1	365	1	SS3_PROX	SS3_PROX:INTRON	ATAD3B	ENSG00000160072.20	ENST00000673477.1:ENST00000308647.8	protein_coding	protein_coding	protein_coding	protein_coding	5	60	2	2.06758	2.44876	2.82994	0.0140038	0.00168661	0.0959618	0.0381778
chr1	45676892	45676992	440491	0	-	0.52	(0.515,0.57]	chr1	53361	153	INTRON	INTRON	GPBP1L1	ENSG00000159592.11	ENST00000290795.7:ENST00000355105.8:ENST00000488278.5:ENST00000480941.1:ENST00000480083.5:ENST00000493083.5:ENST00000460859.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	28	2	2.23915	2.4487449999999997	2.65834	0.0596178	0.0187418	0.16883600000000001	0.117523
chr16	22461042	22461142	6322181	0	+	0.57	(0.515,0.57]	chr16	605326	2	SS5_PROX	SS5_PROX:INTRON	SMG1P1	ENSG00000237296.10	ENST00000381231.5:ENST00000309865.11:ENST00000691795.1:ENST00000308347.10:ENST00000687936.1:ENST00000691423.1:ENST00000337787.3	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	2	28	2	2.23915	2.4487449999999997	2.65834	0.0596178	0.0187418	0.16883600000000001	0.117523
chr17	75209522	75209622	6674298	0	+	0.52	(0.515,0.57]	chr17	651349	3	SS3_PROX	SS3_PROX:INTRON	NUP85	ENSG00000125450.11	ENST00000583569.5:ENST00000245544.9:ENST00000583948.5:ENST00000579324.5:ENST00000449421.6:ENST00000581104.5:ENST00000579298.5:ENST00000583548.1:ENST00000577208.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	28	2	2.23915	2.4487449999999997	2.65834	0.0596178	0.0187418	0.16883600000000001	0.117523
chr17	77323248	77323348	6679865	0	+	0.52	(0.515,0.57]	chr17	652496	3	SS5_PROX	SS5_PROX:INTRON	SEPTIN9	ENSG00000184640.20	ENST00000589070.1:ENST00000591833.5:ENST00000591198.5:ENST00000427177.6:ENST00000590576.5:ENST00000431235.6:ENST00000449803.6:ENST00000587237.1:ENST00000329047.13:ENST00000588575.1:ENST00000590595.1:ENST00000590294.6:ENST00000591934.1:ENST00000588690.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	28	2	2.23915	2.4487449999999997	2.65834	0.0596178	0.0187418	0.16883600000000001	0.117523
chr3	56562269	56562367	1434353	0	+	0.520408	(0.515,0.57]	chr3	151403	5	INTRON	INTRON	CCDC66	ENSG00000180376.17	ENST00000422222.5:ENST00000460838.5:ENST00000439445.5:ENST00000394672.8:ENST00000326595.11:ENST00000459746.5:ENST00000472582.5:ENST00000434467.5:ENST00000471681.5:ENST00000341455.10:ENST00000422788.5:ENST00000442522.6:ENST00000469966.1:ENST00000484623.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	28	2	2.23915	2.4487449999999997	2.65834	0.0596178	0.0187418	0.16883600000000001	0.117523
chr5	112866196	112866292	2453049	0	+	0.552083	(0.515,0.57]	chr5	235038	11	INTRON	INTRON	SRP19	ENSG00000153037.15	ENST00000503445.5:ENST00000505459.6:ENST00000506997.2:ENST00000391338.3:ENST00000282999.7:ENST00000515463.1:ENST00000621420.5:ENST00000506987.1:ENST00000509024.2:ENST00000504696.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	28	2	2.23915	2.4487449999999997	2.65834	0.0596178	0.0187418	0.16883600000000001	0.117523
chr6	35590337	35590434	3086526	0	-	0.525773	(0.515,0.57]	chr6	288751	29	INTRON	INTRON	FKBP5	ENSG00000096060.15	ENST00000536438.5:ENST00000539068.5:ENST00000357266.9:ENST00000542713.1	protein_coding	protein_coding	protein_coding	protein_coding	2	28	2	2.23915	2.4487449999999997	2.65834	0.0596178	0.0187418	0.16883600000000001	0.117523
chr7	107603804	107603903	3379148	0	+	0.525253	(0.515,0.57]	chr7	316475	4	INTRON	INTRON	DUS4L-BCAP29:BCAP29	ENSG00000288558.2:ENSG00000075790.12	ENST00000673689.1:ENST00000673720.1:ENST00000673780.1:ENST00000673709.1:ENST00000673970.1:ENST00000674049.1:ENST00000673992.1:ENST00000673665.1:ENST00000674062.1:ENST00000673784.1:ENST00000673757.1:ENST00000005259.9:ENST00000465919.5:ENST00000494086.5:ENST00000482371.5:ENST00000445771.6:ENST00000442065.5:ENST00000457837.5:ENST00000379117.6:ENST00000379119.6:ENST00000491150.5:ENST00000436699.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	28	2	2.23915	2.4487449999999997	2.65834	0.0596178	0.0187418	0.16883600000000001	0.117523
chr6	147850909	147851009	2992508	0	+	0.41	(0.408,0.44]	chr6	280177	1135	INTRON	INTRON	ENSG00000227681	ENSG00000227681.5	ENST00000427015.1	lncRNA	lncRNA	lncRNA	lncRNA	3	46	2	2.31565	2.44872	2.58179	0.024638	0.0154718	0.131869	0.100909
chr19	1639678	1639777	7112985	0	-	0.343434	(0.32,0.35]	chr19	714651	69	INTRON	INTRON	TCF3	ENSG00000071564.17	ENST00000344749.9:ENST00000611869.5:ENST00000262965.12:ENST00000588136.7:ENST00000453954.6:ENST00000395423.7:ENST00000587235.6:ENST00000586318.1	protein_coding	protein_coding	protein_coding	protein_coding	6	94	2	2.05666	2.44871	2.84076	0.00840213	0.0027933	0.0824581	0.0469265
chr2	167853617	167853717	1258336	0	-	0.38	(0.378,0.408]	chr2	133322	380	INTRON	INTRON	B3GALT1-AS1	ENSG00000235335.3	ENST00000430546.2:ENST00000657553.1:ENST00000670221.1:ENST00000436982.2	lncRNA	lncRNA	lncRNA	lncRNA	6	86	2	1.80483	2.448705	3.09258	0.0201276	8.09686e-4	0.121243	0.0263656
chr16	70262724	70262824	6510211	0	-	0.52	(0.515,0.57]	chr16	630545	2	SS3_PROX	SS3_PROX:INTRON	AARS1	ENSG00000090861.17	ENST00000674963.1:ENST00000675643.1:ENST00000675917.1:ENST00000674691.1:ENST00000261772.13:ENST00000675569.1:ENST00000676209.1:ENST00000676211.1:ENST00000676040.1:ENST00000675953.1:ENST00000675691.1:ENST00000676004.1:ENST00000675270.1:ENST00000675403.1:ENST00000676212.1:ENST00000675045.1:ENST00000675035.1:ENST00000676168.1:ENST00000674652.1:ENST00000675133.1:ENST00000675120.1:ENST00000674811.1:ENST00000674512.1:ENST00000675853.1:ENST00000565361.3:ENST00000676247.1:ENST00000674848.1:ENST00000674962.1:ENST00000675371.1:ENST00000675986.1:ENST00000674768.1:ENST00000675297.1:ENST00000675751.1:ENST00000564359.6:ENST00000569790.2:ENST00000566969.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	15	163	2	1.67289	2.44869	3.22449	0.00681896	3.91643e-6	0.0712518	0.00131367
chr7	107488640	107488740	3612272	0	-	0.45	(0.44,0.476]	chr7	336698	78	INTRON	INTRON	COG5	ENSG00000164597.15	ENST00000297135.9:ENST00000347053.8:ENST00000393603.7:ENST00000475638.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	136	2	2.32744	2.4486800000000004	2.56992	0.00170738	0.00035449500000000003	0.037419	0.0168579
chr11	66621830	66621928	4810851	0	+	0.346939	(0.32,0.35]	chr11	447861	5	INTRON	INTRON	RBM14-RBM4:RBM14	ENSG00000248643.5:ENSG00000239306.5	ENST00000412278.2:ENST00000393979.3:ENST00000511114.1:ENST00000310137.5:ENST00000409372.1:ENST00000421355.1:ENST00000443702.1:ENST00000500635.2:ENST00000409738.4:ENST00000461478.1:ENST00000496694.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	12	181	2	2.06083	2.4486350000000003	2.83644	0.00182743	3.91661e-4	0.0396683	0.0184748
chr20	32372952	32373052	7255972	0	+	0.5	(0.476,0.515]	chr20	737076	5	INTRON	INTRON	ASXL1	ENSG00000171456.21	ENST00000651418.1:ENST00000375687.10:ENST00000613218.4:ENST00000644587.1:ENST00000620121.4:ENST00000646985.1:ENST00000643168.1:ENST00000306058.9:ENST00000645688.1:ENST00000470145.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	58	2	2.21677	2.4485	2.68023	0.0207026	0.00353671	0.110999	0.0546236
chr10	21622280	21622379	4405302	0	+	0.424242	(0.408,0.44]	chr10	406483	47	INTRON	INTRON	MLLT10	ENSG00000078403.17	ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000651298.1:ENST00000377059.7:ENST00000652258.1:ENST00000651382.1:ENST00000438473.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	53	2	2.17784	2.448475	2.71911	0.0189489	0.00916282	0.108861	0.0855292
chr22	40855359	40855454	7590709	0	-	0.526316	(0.515,0.57]	chr22	777285	9	INTRON	INTRON	ST13	ENSG00000100380.15	ENST00000216218.8:ENST00000455824.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	28	2	2.43589	2.448465	2.46104	0.0370871	0.032841	0.145164	0.139194
chr3	10037017	10037106	1362289	0	+	0.516854	(0.515,0.57]	chr3	143452	3	INTRON	INTRON	FANCD2	ENSG00000144554.13	ENST00000682647.1:ENST00000287647.7:ENST00000676013.1:ENST00000675286.1:ENST00000419585.5:ENST00000431693.1:ENST00000438741.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	28	2	2.43589	2.448465	2.46104	0.0370871	0.032841	0.145164	0.139194
chr9	132321334	132321433	4366823	0	-	0.535354	(0.515,0.57]	chr9	401462	91	INTRON	INTRON	SETX	ENSG00000107290.14	ENST00000224140.6	protein_coding	protein_coding	protein_coding	protein_coding	2	28	2	2.43589	2.448465	2.46104	0.0370871	0.032841	0.145164	0.139194
chr18	21596652	21596752	6955075	0	-	0.48	(0.476,0.515]	chr18	688033	3	SS5_PROX	SS5_PROX:INTRON	ESCO1	ENSG00000141446.11	ENST00000269214.10:ENST00000383276.1:ENST00000580101.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	16	169	2	1.57695	2.4484500000000002	3.31995	0.00683023	4.9394e-5	0.0748032	0.00608708
chr21	7439427	7439527	7365697	0	+	0.32	(0.28,0.32]	chr21	751728	82	INTRON	INTRON	ENSG00000276077	ENSG00000276077.4	ENST00000617062.4:ENST00000625096.3:ENST00000624791.1:ENST00000624907.3:ENST00000624461.3:ENST00000625115.1	lncRNA	lncRNA	lncRNA	lncRNA	4	67	2	1.6633	2.4484250000000003	3.23355	0.0522231	0.004869	0.177274	0.0607461
chr18	807320	807419	6940657	0	-	0.454545	(0.44,0.476]	chr18	686527	93	INTRON	INTRON	YES1	ENSG00000176105.14	ENST00000584307.5:ENST00000314574.5:ENST00000577611.1:ENST00000581960.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	148	2	1.8752	2.44839	3.02158	0.00504991	9.44738e-5	0.0646039	0.00865927
chr6	20452367	20452467	2827954	0	+	0.37	(0.35,0.378]	chr6	265583	123	INTRON	INTRON	E2F3	ENSG00000112242.16	ENST00000346618.8:ENST00000535432.2	protein_coding	protein_coding	protein_coding	protein_coding	4	57	2	1.76773	2.44839	3.12905	0.0373863	0.00566312	0.155878	0.0653997
chr15	95073183	95073283	6107373	0	+	0.41	(0.408,0.44]	chr15	581726	38	INTRON	INTRON	ENSG00000277654	ENSG00000277654.6	ENST00000621842.4:ENST00000615751.4:ENST00000616940.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	4	59	2	2.44674	2.448385	2.45003	0.00990006	0.00868283	0.0842798	0.0838372
chr4	87027792	87027892	1994726	0	+	0.49	(0.476,0.515]	chr4	199041	200	INTRON	INTRON	AFF1	ENSG00000172493.23	ENST00000504956.5:ENST00000395146.9:ENST00000507468.5:ENST00000674009.1:ENST00000503477.5:ENST00000511442.1:ENST00000544085.6:ENST00000307808.10:ENST00000511722.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	58	2	2.41121	2.44836	2.48551	0.0110342	0.00756632	0.0873897	0.0773151
chr1	114749913	114750011	528555	0	-	0.387755	(0.378,0.408]	chr1	62352	2	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CSDE1	ENSG00000009307.17	ENST00000339438.10:ENST00000610726.5:ENST00000692719.1:ENST00000358528.9:ENST00000688211.1:ENST00000438362.7:ENST00000689217.1:ENST00000689989.1:ENST00000686025.1:ENST00000686781.1:ENST00000686123.1:ENST00000684913.1:ENST00000686235.1:ENST00000693467.1:ENST00000689732.1:ENST00000693644.1:ENST00000687759.1:ENST00000692044.1:ENST00000689885.1:ENST00000691403.1:ENST00000692629.1:ENST00000690013.1:ENST00000690420.1:ENST00000692950.1:ENST00000686667.1:ENST00000691032.1:ENST00000685676.1:ENST00000529046.6:ENST00000692672.1:ENST00000691377.1:ENST00000688611.1:ENST00000690207.1:ENST00000693311.1:ENST00000689510.1:ENST00000686581.1:ENST00000689727.1:ENST00000690784.1:ENST00000483030.2:ENST00000687548.1:ENST00000261443.9:ENST00000530886.5:ENST00000369530.5:ENST00000534699.5:ENST00000524652.2:ENST00000525132.1:ENST00000525878.5:ENST00000525970.5:ENST00000533818.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	20	272	2	1.95279	2.448255	2.94372	0.00184061	6.75531e-6	0.0388609	0.00184088
chr2	61501402	61501495	1130841	0	-	0.494624	(0.476,0.515]	chr2	121585	10	INTRON	INTRON	XPO1	ENSG00000082898.19	ENST00000677110.1:ENST00000676553.1:ENST00000677556.1:ENST00000677814.1:ENST00000676771.1:ENST00000677803.1:ENST00000677239.1:ENST00000678790.1:ENST00000677928.1:ENST00000678182.1:ENST00000677150.1:ENST00000678172.1:ENST00000678360.1:ENST00000678081.1:ENST00000676889.1:ENST00000676783.1:ENST00000679035.1:ENST00000677422.1:ENST00000677417.1:ENST00000677813.1:ENST00000676999.1:ENST00000676667.1:ENST00000678263.1:ENST00000678877.1:ENST00000677933.1:ENST00000680228.1:ENST00000677289.1:ENST00000677190.1:ENST00000481073.6:ENST00000401558.7:ENST00000428210.5:ENST00000677290.1:ENST00000677850.1:ENST00000451765.6:ENST00000676789.1:ENST00000678741.1:ENST00000404992.6:ENST00000406957.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	144	2	2.38865	2.4482150000000003	2.50778	0.00128608	3.58725e-4	0.0328018	0.0169207
chr16	88949317	88949417	6541020	0	-	0.51	(0.476,0.515]	chr16	634104	76	INTRON	INTRON	CBFA2T3	ENSG00000129993.15	ENST00000268679.9:ENST00000563640.1:ENST00000570046.1	protein_coding	protein_coding	protein_coding	protein_coding	11	144	2	2.02951	2.44811	2.86671	0.00244513	2.11053e-4	0.0457273	0.0132122
chr5	154760181	154760281	2527046	0	+	0.59	(0.57,1]	chr5	241610	23	INTRON	INTRON	LARP1	ENSG00000155506.19	ENST00000687700.1:ENST00000336314.9:ENST00000690816.1:ENST00000518297.6:ENST00000517616.5:ENST00000518892.1:ENST00000521577.1:ENST00000519931.5:ENST00000524248.5:ENST00000685946.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	42	2	2.161	2.4479949999999997	2.73499	0.00462668	0.00237434	0.062717	0.0438057
chr1	1106349	1106449	358714	0	-	0.37	(0.35,0.378]	chr1	41370	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	C1orf159	ENSG00000131591.18	ENST00000379339.5:ENST00000379325.7:ENST00000421241.7:ENST00000467751.5:ENST00000477196.5:ENST00000434641.5:ENST00000482816.5:ENST00000462097.5:ENST00000475119.5:ENST00000472741.5:ENST00000480643.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	47	2	2.23043	2.44795	2.66547	0.0233639	0.0187487	0.118323	0.117523
chr14	19063524	19063617	5655030	0	+	0.290323	(0.28,0.32]	chr14	538985	7	INTRON	INTRON	DUXAP9	ENSG00000225210.10	ENST00000549484.5:ENST00000547220.5:ENST00000610585.4:ENST00000621361.4:ENST00000620237.1:ENST00000619938.1:ENST00000644980.1:ENST00000619210.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	2	41	2	2.38101	2.447945	2.51488	0.0456017	0.0380957	0.164236	0.141678
chr2	62950058	62950157	794760	0	+	0.30303	(0.28,0.32]	chr2	88824	5	INTRON	INTRON	EHBP1	ENSG00000115504.15	ENST00000405015.7:ENST00000431489.6:ENST00000263991.9:ENST00000405289.5:ENST00000469591.1:ENST00000444311.1:ENST00000454124.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	41	2	2.38101	2.447945	2.51488	0.0456017	0.0380957	0.164236	0.141678
chr9	131128231	131128331	4215645	0	+	0.32	(0.28,0.32]	chr9	386508	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	NUP214	ENSG00000126883.19	ENST00000695497.1:ENST00000695498.1:ENST00000695496.1:ENST00000695495.1:ENST00000695494.1:ENST00000695493.1:ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000525561.2:ENST00000651022.1:ENST00000651639.1:ENST00000531584.1:ENST00000695499.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	41	2	2.38101	2.447945	2.51488	0.0456017	0.0380957	0.164236	0.141678
chr10	68765087	68765187	4442727	0	+	0.48	(0.476,0.515]	chr10	409684	35	INTRON	INTRON	CCAR1	ENSG00000060339.14	ENST00000630771.2:ENST00000543719.5:ENST00000541012.5:ENST00000265872.11:ENST00000539539.5:ENST00000543229.5:ENST00000536012.5:ENST00000543225.5:ENST00000540210.5:ENST00000479143.2:ENST00000543706.1:ENST00000539250.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	44	2	2.16377	2.4479100000000003	2.73205	0.0243026	0.0159328	0.12011	0.109464
chr16	88728357	88728455	6539621	0	-	0.571429	(0.57,1]	chr16	633912	3	INTRON	INTRON	PIEZO1	ENSG00000103335.22	ENST00000301015.14	protein_coding	protein_coding	protein_coding	protein_coding	6	42	2	2.02689	2.447905	2.86892	0.00839052	0.00125753	0.0823837	0.0323608
chr22	20518178	20518277	7479453	0	+	0.494949	(0.476,0.515]	chr22	762951	94	INTRON	INTRON	MED15	ENSG00000099917.17	ENST00000445987.5:ENST00000444094.5:ENST00000414658.5:ENST00000486656.5:ENST00000433831.5:ENST00000432052.5:ENST00000292733.11:ENST00000263205.11:ENST00000477824.5:ENST00000406969.5:ENST00000382974.6:ENST00000441501.5:ENST00000438962.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	108	2	2.20461	2.447825	2.69104	0.0029162	9.94264e-4	0.0480256	0.0290397
chr16	16587786	16587886	6311740	0	+	0.39	(0.378,0.408]	chr16	604098	878	INTRON	INTRON	ENSG00000260126	ENSG00000260126.2	ENST00000567465.2	lncRNA	lncRNA	lncRNA	lncRNA	4	55	2	1.65821	2.447645	3.23708	0.0506302	0.00365053	0.17547	0.0535094
chr1	153895571	153895670	557492	0	-	0.30303	(0.28,0.32]	chr1	65989	87	INTRON	INTRON	GATAD2B	ENSG00000143614.10	ENST00000368655.5:ENST00000634544.1:ENST00000634408.1:ENST00000634401.1:ENST00000634791.1:ENST00000636014.1:ENST00000637331.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	108	2	2.36049	2.4476199999999997	2.53475	0.00700135	0.00257029	0.0718189	0.0466761
chr1	219201356	219201456	318655	0	+	0.28	[0,0.28]	chr1	36461	22	INTRON	INTRON	LYPLAL1	ENSG00000143353.12	ENST00000460522.5:ENST00000366927.3:ENST00000366928.10:ENST00000477938.5:ENST00000463964.5:ENST00000483635.5:ENST00000474379.5:ENST00000469590.5:ENST00000478794.5:ENST00000475724.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	75	2	1.95669	2.4475949999999997	2.9385	0.0237518	0.0142776	0.129075	0.0963703
chr19	46779506	46779605	7195329	0	-	0.484848	(0.476,0.515]	chr19	728984	2	INTRON	INTRON	SLC1A5	ENSG00000105281.12	ENST00000542575.6:ENST00000594991.5:ENST00000434726.6:ENST00000412532.6:ENST00000593713.1	protein_coding	protein_coding	protein_coding	protein_coding	4	52	2	1.74317	2.4475949999999997	3.15202	0.0396373	0.00455841	0.161534	0.0595107
chr15	50604583	50604674	6172441	0	-	0.351648	(0.35,0.378]	chr15	588283	8	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	TRPM7	ENSG00000092439.16	ENST00000646667.1:ENST00000560955.5:ENST00000560638.1	protein_coding	protein_coding	protein_coding	protein_coding	2	35	2	2.24535	2.447575	2.6498	0.0647516	0.0210137	0.179192	0.122348
chr16	14612504	14612604	6449672	0	-	0.37	(0.35,0.378]	chr16	621343	13	INTRON	INTRON	PARN	ENSG00000140694.17	ENST00000651865.1:ENST00000437198.7:ENST00000651348.1:ENST00000650990.1:ENST00000651760.1:ENST00000652541.1:ENST00000652727.1:ENST00000652066.1:ENST00000651300.1:ENST00000420015.6:ENST00000652051.1:ENST00000341484.11:ENST00000539279.5:ENST00000651049.1:ENST00000650960.1:ENST00000651634.1:ENST00000564113.6:ENST00000652411.1:ENST00000652501.1:ENST00000651027.1:ENST00000651913.1:ENST00000563641.6:ENST00000651241.1:ENST00000538472.5:ENST00000566021.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	35	2	2.24535	2.447575	2.6498	0.0647516	0.0210137	0.179192	0.122348
chr3	185682976	185683075	1884920	0	-	0.373737	(0.35,0.378]	chr3	188536	67	INTRON	INTRON	IGF2BP2	ENSG00000073792.16	ENST00000382199.7:ENST00000346192.7:ENST00000457616.6:ENST00000421047.3:ENST00000494906.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	35	2	2.24535	2.447575	2.6498	0.0647516	0.0210137	0.179192	0.122348
chr5	181231987	181232083	2563282	0	+	0.375	(0.35,0.378]	chr5	245290	13	EXON_MRNA	EXON_MRNA:INTRON	TRIM41	ENSG00000146063.20	ENST00000515499.5:ENST00000315073.10:ENST00000351937.9:ENST00000508930.1:ENST00000503114.1:ENST00000515223.1:ENST00000515834.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	35	2	2.24535	2.447575	2.6498	0.0647516	0.0210137	0.179192	0.122348
chr9	99106101	99106201	4175444	0	+	0.36	(0.35,0.378]	chr9	380654	4	INTRON	INTRON	TGFBR1	ENSG00000106799.13	ENST00000547314.5:ENST00000552573.6:ENST00000374990.6:ENST00000374994.9:ENST00000552516.5:ENST00000549766.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	35	2	2.24535	2.447575	2.6498	0.0647516	0.0210137	0.179192	0.122348
chr12	42234951	42235049	5313581	0	-	0.377551	(0.35,0.378]	chr12	505341	39	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	YAF2	ENSG00000015153.15	ENST00000534854.7:ENST00000327791.8:ENST00000380790.4:ENST00000552109.5:ENST00000547622.5:ENST00000547351.5:ENST00000551268.5:ENST00000548661.5:ENST00000546726.5:ENST00000547724.1:ENST00000552928.5:ENST00000548917.1:ENST00000547254.5:ENST00000555248.2:ENST00000541702.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	35	2	2.32443	2.44746	2.57049	0.0544216	0.0262669	0.164972	0.133676
chrX	135995285	135995385	7726751	0	+	0.37	(0.35,0.378]	chrX	790606	3	SS5_PROX	SS5_PROX:INTRON	SLC9A6	ENSG00000198689.13	ENST00000636347.1:ENST00000636092.1:ENST00000637195.1:ENST00000637234.1:ENST00000637581.1:ENST00000370701.6:ENST00000370698.7:ENST00000627534.2:ENST00000630721.3:ENST00000678163.1:ENST00000370695.8:ENST00000675856.1:ENST00000643775.1:ENST00000674809.1:ENST00000676043.1:ENST00000675550.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	35	2	2.32443	2.44746	2.57049	0.0544216	0.0262669	0.164972	0.133676
chr12	46256135	46256235	5316398	0	-	0.33	(0.32,0.35]	chr12	505749	8	INTRON	INTRON	SLC38A1	ENSG00000111371.16	ENST00000398637.10:ENST00000439706.5:ENST00000549049.5:ENST00000546893.5:ENST00000552197.5:ENST00000549633.5:ENST00000551506.1:ENST00000550173.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	68	2	2.30731	2.44742	2.58753	0.0176772	0.00560122	0.10525	0.0678837
chr15	64475121	64475220	6044233	0	+	0.414141	(0.408,0.44]	chr15	575688	139	INTRON	INTRON	ZNF609	ENSG00000180357.10	ENST00000326648.5:ENST00000416172.1	protein_coding	protein_coding	protein_coding	protein_coding	3	44	2	1.74775	2.447405	3.14706	0.0735403	0.00382411	0.190238	0.0562562
chr6	156786864	156786964	3007250	0	+	0.37	(0.35,0.378]	chr6	281094	70	INTRON	INTRON	ARID1B	ENSG00000049618.24	ENST00000346085.10:ENST00000636930.2:ENST00000647938.1:ENST00000350026.10:ENST00000674298.1:ENST00000674190.1:ENST00000636748.1:ENST00000494260.2:ENST00000637910.1:ENST00000636607.1:ENST00000414678.7:ENST00000638000.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	48	2	1.90405	2.447245	2.99044	0.0482651	0.00894806	0.171852	0.0799922
chr11	48011605	48011705	4789529	0	+	0.43	(0.408,0.44]	chr11	443265	302	INTRON	INTRON	PTPRJ	ENSG00000149177.14	ENST00000418331.7:ENST00000440289.6:ENST00000527952.1:ENST00000534219.5	protein_coding	protein_coding	protein_coding	protein_coding	8	111	2	2.36252	2.4472050000000003	2.53189	0.00260554	8.78846e-4	0.0455058	0.0269932
chr16	16604080	16604180	6311903	0	+	0.42	(0.408,0.44]	chr16	604098	1041	INTRON	INTRON	ENSG00000260126	ENSG00000260126.2	ENST00000567465.2	lncRNA	lncRNA	lncRNA	lncRNA	3	44	2	2.00228	2.4471049999999996	2.89193	0.0389732	0.00950364	0.143072	0.0863579
chr18	21558661	21558761	6954684	0	-	0.42	(0.408,0.44]	chr18	687986	176	INTRON	INTRON	ESCO1	ENSG00000141446.11	ENST00000269214.10:ENST00000383276.1:ENST00000622333.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	44	2	2.00228	2.4471049999999996	2.89193	0.0389732	0.00950364	0.143072	0.0863579
chr17	36504883	36504979	6759325	0	-	0.4375	(0.408,0.44]	chr17	664497	10	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	MYO19	ENSG00000278259.5	ENST00000614623.5:ENST00000610992.4:ENST00000621550.4:ENST00000610930.4:ENST00000611622.4:ENST00000611794.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	136	2	2.2066	2.4470549999999998	2.68751	0.00198985	3.87147e-4	0.0405223	0.0177751
chr5	180498786	180498886	2561907	0	+	0.52	(0.515,0.57]	chr5	245082	28	INTRON	INTRON	CNOT6	ENSG00000113300.13	ENST00000261951.9:ENST00000393356.7:ENST00000507016.1:ENST00000618123.4:ENST00000502447.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	50	2	2.43783	2.44684	2.45585	0.00916404	0.00797827	0.0812949	0.0798772
chrX	48955876	48955976	7816056	0	-	0.52	(0.515,0.57]	chrX	796867	112	INTRON	INTRON	OTUD5	ENSG00000068308.15	ENST00000376488.8:ENST00000396743.7:ENST00000455452.5:ENST00000156084.8:ENST00000428668.2:ENST00000484499.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	50	2	2.43783	2.44684	2.45585	0.00916404	0.00797827	0.0812949	0.0798772
chr1	45613248	45613348	93506	0	+	0.48	(0.476,0.515]	chr1	12617	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	NASP	ENSG00000132780.17	ENST00000437901.6:ENST00000537798.5:ENST00000437362.6:ENST00000350030.8:ENST00000527359.5:ENST00000453748.5:ENST00000525515.5:ENST00000528238.5:ENST00000372052.8:ENST00000351223.7:ENST00000530073.5:ENST00000481782.1:ENST00000531612.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	98	2	2.07116	2.446835	2.82251	0.00731321	6.78359e-4	0.076234	0.023827
chr1	21727160	21727259	396290	0	-	0.30303	(0.28,0.32]	chr1	47279	7	INTRON	INTRON	USP48	ENSG00000090686.16	ENST00000400301.5:ENST00000308271.14:ENST00000529637.5:ENST00000526044.5:ENST00000534705.5	protein_coding	protein_coding	protein_coding	protein_coding	6	103	2	1.67134	2.44678	3.22222	0.0387947	4.01934e-4	0.143072	0.0180102
chr12	93437352	93437452	5388193	0	-	0.38	(0.378,0.408]	chr12	513727	126	INTRON	INTRON	UBE2N	ENSG00000177889.10	ENST00000318066.7:ENST00000550657.1:ENST00000549833.1:ENST00000549490.1:ENST00000552442.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	63	2	1.56313	2.446695	3.33026	0.0474151	0.00189824	0.153019	0.0402736
chr6	7120580	7120679	2798491	0	+	0.313131	(0.28,0.32]	chr6	263723	115	INTRON	INTRON	RREB1	ENSG00000124782.21	ENST00000379933.7:ENST00000491191.5:ENST00000471433.5:ENST00000379938.7:ENST00000467782.5:ENST00000349384.10:ENST00000334984.10:ENST00000475946.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	55	2	1.81582	2.44663	3.07744	0.068122	0.00604536	0.184298	0.0700813
chr7	100468896	100468995	3586861	0	-	0.535354	(0.515,0.57]	chr7	334405	9	INTRON	INTRON	TSC22D4	ENSG00000166925.9	ENST00000496728.1:ENST00000300181.7:ENST00000393991.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	52	2	1.63907	2.446595	3.25412	0.0350277	0.00224554	0.137535	0.0435144
chr2	97236668	97236768	832131	0	+	0.29	(0.28,0.32]	chr2	93233	24	INTRON	INTRON	ANKRD36	ENSG00000135976.21	ENST00000420699.9:ENST00000652721.1:ENST00000461153.7:ENST00000421946.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	74	2	2.25939	2.4465899999999996	2.63379	0.021772	0.00503861	0.11491	0.0646039
chr3	196750349	196750449	1595598	0	+	0.31	(0.28,0.32]	chr3	165300	98	INTRON	INTRON	PAK2	ENSG00000180370.10	ENST00000327134.7	protein_coding	protein_coding	protein_coding	protein_coding	4	74	2	2.25939	2.4465899999999996	2.63379	0.021772	0.00503861	0.11491	0.0646039
chr20	50899742	50899840	7355557	0	-	0.265306	[0,0.28]	chr20	750082	49	INTRON	INTRON	ADNP	ENSG00000101126.18	ENST00000371602.9:ENST00000621696.5:ENST00000673732.1:ENST00000396029.8:ENST00000644386.1:ENST00000396032.8:ENST00000349014.8:ENST00000645081.1:ENST00000642364.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	46	2	2.38757	2.446535	2.5055	0.0552962	0.0359431	0.165463	0.152322
chr6	140872905	140873005	3240878	0	-	0.27	[0,0.28]	chr6	301060	67	INTRON	INTRON	ENSG00000234147	ENSG00000234147.3	ENST00000650553.2:ENST00000692940.1:ENST00000683641.1:ENST00000682196.1:ENST00000684320.1:ENST00000683889.1:ENST00000683062.1:ENST00000682608.1:ENST00000455011.2:ENST00000682812.1:ENST00000683340.1:ENST00000683841.1:ENST00000683589.1:ENST00000684268.1:ENST00000683480.1	lncRNA	lncRNA	lncRNA	lncRNA	2	46	2	2.38757	2.446535	2.5055	0.0552962	0.0359431	0.165463	0.152322
chr7	105320567	105320666	3603222	0	-	0.232323	[0,0.28]	chr7	336161	136	INTRON	INTRON	SRPK2	ENSG00000135250.17	ENST00000393651.8:ENST00000482897.5:ENST00000460391.5:ENST00000462282.5:ENST00000465112.5:ENST00000482862.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	46	2	2.38757	2.446535	2.5055	0.0552962	0.0359431	0.165463	0.152322
chrX	73971672	73971772	7682375	0	+	0.24	[0,0.28]	chrX	786638	33	INTRON	INTRON	JPX	ENSG00000225470.8	ENST00000664637.1:ENST00000639185.1:ENST00000655090.1:ENST00000640437.1:ENST00000660546.1:ENST00000667886.1:ENST00000660840.1:ENST00000657179.1:ENST00000670506.1:ENST00000657910.1:ENST00000662120.1:ENST00000671207.1:ENST00000659254.1:ENST00000656624.1:ENST00000667573.1:ENST00000660856.1:ENST00000660836.1:ENST00000668590.1:ENST00000658649.1:ENST00000414209.6:ENST00000654137.1:ENST00000670994.1:ENST00000602772.5:ENST00000655879.1:ENST00000657372.1:ENST00000657096.1:ENST00000602985.6:ENST00000670685.1:ENST00000670503.1:ENST00000663027.1:ENST00000654995.1:ENST00000602895.6:ENST00000654374.1:ENST00000660087.1:ENST00000665032.1:ENST00000671336.1:ENST00000671476.1:ENST00000667057.1:ENST00000670192.1:ENST00000670464.1:ENST00000665345.1:ENST00000661546.1:ENST00000662543.1:ENST00000602938.6:ENST00000664295.1:ENST00000654005.1:ENST00000669149.1:ENST00000659852.1:ENST00000656509.1:ENST00000602294.6:ENST00000667294.1:ENST00000663470.1:ENST00000602920.6:ENST00000671021.1:ENST00000659849.1:ENST00000667937.1:ENST00000661130.1:ENST00000654196.1:ENST00000655994.1:ENST00000659373.1:ENST00000662239.1:ENST00000670805.1:ENST00000656263.1:ENST00000653069.1:ENST00000657638.1:ENST00000653808.1:ENST00000653929.1:ENST00000653885.1:ENST00000659023.1:ENST00000602546.5:ENST00000659622.1:ENST00000671518.1:ENST00000670408.1	lncRNA	lncRNA	lncRNA	lncRNA	2	46	2	2.38757	2.446535	2.5055	0.0552962	0.0359431	0.165463	0.152322
chr6	67882280	67882380	3135256	0	-	0.48	(0.476,0.515]	chr6	292159	2	EXON_LNCRNA	EXON_LNCRNA:INTRON	ENSG00000227706	ENSG00000227706.4	ENST00000657794.1:ENST00000652869.1:ENST00000662821.1:ENST00000658972.1:ENST00000663640.1:ENST00000660755.1:ENST00000660756.1:ENST00000667200.1:ENST00000654364.1:ENST00000670870.1:ENST00000666873.1	lncRNA	lncRNA	lncRNA	lncRNA	119	1559	2	2.43202	2.44641	2.4608	7.20649e-6	3.23184e-6	0.00201767	0.00116694
chr19	57863225	57863325	7106170	0	+	0.49	(0.476,0.515]	chr19	713245	32	UTR3	UTR3:EXON_MRNA	ZNF587	ENSG00000198466.12	ENST00000339656.8:ENST00000419854.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	14	170	2	1.87531	2.44637	3.01743	0.00246923	9.21054e-5	0.0459854	0.00853581
chr4	126542216	126542316	2236131	0	-	0.35	(0.32,0.35]	chr4	219023	767	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	5	83	2	1.77409	2.44633	3.11857	0.0414296	5.76454e-4	0.146067	0.0218153
chr5	34951643	34951743	2337590	0	+	0.53	(0.515,0.57]	chr5	225786	13	EXON_LNCRNA	EXON_LNCRNA:INTRON	DNAJC21	ENSG00000168724.17	ENST00000648817.1:ENST00000382021.2:ENST00000642851.1:ENST00000642675.1:ENST00000642285.1:ENST00000646714.1:ENST00000512136.1:ENST00000506762.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	51	2	2.26012	2.44631	2.6325	0.0160033	0.00439001	0.109464	0.0585064
chrX	41178027	41178126	7645011	0	+	0.252525	[0,0.28]	chrX	782342	57	INTRON	INTRON	USP9X	ENSG00000124486.14	ENST00000324545.9:ENST00000378308.7	protein_coding	protein_coding	protein_coding	protein_coding	5	104	2	1.73226	2.446285	3.16031	0.0524108	6.84313e-4	0.160429	0.0238224
chr14	102648005	102648105	5823087	0	+	0.33	(0.32,0.35]	chr14	552490	543	INTRON	INTRON	RCOR1	ENSG00000089902.10	ENST00000262241.7	protein_coding	protein_coding	protein_coding	protein_coding	6	77	2	1.54135	2.446255	3.35116	0.0353776	0.00283808	0.150752	0.0473151
chr3	177150500	177150600	1871976	0	-	0.39	(0.378,0.408]	chr3	187422	144	INTRON	INTRON	TBL1XR1	ENSG00000177565.18	ENST00000457928.7:ENST00000430069.5:ENST00000673974.1:ENST00000352800.10:ENST00000422442.6:ENST00000428970.5:ENST00000424913.5:ENST00000437738.5:ENST00000431421.5:ENST00000635794.1:ENST00000630796.2:ENST00000450267.5:ENST00000630833.2:ENST00000431674.5:ENST00000422066.5:ENST00000443315.5:ENST00000627825.2:ENST00000427349.5:ENST00000413084.5:ENST00000637137.1:ENST00000491623.2:ENST00000637544.1:ENST00000636187.1:ENST00000636912.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	54	2	1.8374	2.4462099999999998	3.05502	0.0299228	0.00689519	0.142135	0.0717484
chr15	44543404	44543503	6015449	0	+	0.494949	(0.476,0.515]	chr15	573008	56	INTRON	INTRON	EIF3J	ENSG00000104131.13	ENST00000424492.7:ENST00000261868.10:ENST00000535391.5	protein_coding	protein_coding	protein_coding	protein_coding	7	96	2	2.24654	2.446175	2.64581	0.00346427	0.00154394	0.0539802	0.0357205
chr5	146481994	146482094	2515865	0	+	0.3	(0.28,0.32]	chr5	240359	9	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	TCERG1	ENSG00000113649.13	ENST00000296702.9:ENST00000679501.2:ENST00000394421.7:ENST00000549332.1:ENST00000515203.5:ENST00000506524.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	74	2	2.22069	2.44611	2.67153	0.0243177	0.00436402	0.12011	0.060356
chr12	46368037	46368136	5316654	0	-	0.414141	(0.408,0.44]	chr12	505810	3	INTRON	INTRON	SLC38A2	ENSG00000134294.14	ENST00000256689.10:ENST00000549258.5:ENST00000612232.1:ENST00000547252.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	21	280	2	2.32224	2.446035	2.56983	3.43735e-4	2.9388e-5	0.0172459	0.00430914
chr9	112155399	112155499	4316582	0	-	0.49	(0.476,0.515]	chr9	396987	56	INTRON	INTRON	SUSD1	ENSG00000106868.17	ENST00000374270.8:ENST00000374263.7:ENST00000355396.7:ENST00000374264.6	protein_coding	protein_coding	protein_coding	protein_coding	3	43	2	2.26034	2.44601	2.63168	0.0237106	0.0166235	0.118716	0.110511
chr16	89812953	89813050	6544792	0	-	0.484536	(0.476,0.515]	chr16	634616	15	INTRON	INTRON	FANCA	ENSG00000187741.16	ENST00000561667.2:ENST00000389301.8:ENST00000568369.6:ENST00000564475.6:ENST00000696275.1:ENST00000696287.1:ENST00000696286.1:ENST00000696291.1:ENST00000696276.1:ENST00000567205.2:ENST00000567284.7:ENST00000696277.1:ENST00000696292.1:ENST00000563767.2:ENST00000567621.6:ENST00000696288.1:ENST00000696293.1:ENST00000566889.5:ENST00000389302.7:ENST00000696294.1:ENST00000696295.1:ENST00000563673.5:ENST00000543736.5:ENST00000534992.5:ENST00000565582.5:ENST00000696296.1:ENST00000563513.1:ENST00000567883.5:ENST00000567943.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	122	2	2.29629	2.44595	2.59561	0.00151994	8.4503e-4	0.0360297	0.0267232
chr16	90157731	90157831	6424453	0	+	0.51	(0.476,0.515]	chr16	617209	199	INTRON	INTRON	FAM157C	ENSG00000260528.6	ENST00000568070.1	lncRNA	lncRNA	lncRNA	lncRNA	13	171	2	2.17203	2.4459400000000002	2.71985	0.00116027	1.52058e-4	0.0311719	0.0106137
chr20	32383536	32383636	7256078	0	+	0.58	(0.57,1]	chr20	737076	111	INTRON	INTRON	ASXL1	ENSG00000171456.21	ENST00000651418.1:ENST00000375687.10:ENST00000613218.4:ENST00000644587.1:ENST00000620121.4:ENST00000646985.1:ENST00000643168.1:ENST00000306058.9:ENST00000645688.1:ENST00000470145.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	31	2	2.23711	2.4459049999999998	2.6547	0.0172108	0.00346848	0.104099	0.0539802
chr4	2646832	2646932	1913628	0	+	0.64	(0.57,1]	chr4	192015	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	FAM193A	ENSG00000125386.16	ENST00000637812.2:ENST00000324666.9:ENST00000382839.7:ENST00000512465.5:ENST00000545951.5:ENST00000502458.5:ENST00000513898.5:ENST00000505311.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	32	2	1.62421	2.4459049999999998	3.2676	0.0376752	0.00176203	0.156361	0.0376652
chr7	140037015	140037114	3658989	0	-	0.59596	(0.57,1]	chr7	339590	23	INTRON	INTRON	PARP12	ENSG00000059378.13	ENST00000263549.8:ENST00000473341.5:ENST00000488726.5:ENST00000489809.5:ENST00000491598.5:ENST00000470515.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	31	2	2.23711	2.4459049999999998	2.6547	0.0172108	0.00346848	0.104099	0.0539802
chr7	7207331	7207431	3274838	0	+	0.4	(0.378,0.408]	chr7	304569	242	INTRON	INTRON	C1GALT1	ENSG00000106392.11	ENST00000429911.5:ENST00000436587.7:ENST00000467716.1:ENST00000476068.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	62	2	2.29798	2.44589	2.5938	0.0147606	0.00614976	0.106702	0.0676501
chr14	90023676	90023775	5804562	0	+	0.525253	(0.515,0.57]	chr14	550021	2	INTRON	INTRON	TDP1	ENSG00000042088.14	ENST00000554976.5:ENST00000393452.7:ENST00000335725.9:ENST00000393454.6:ENST00000545686.6:ENST00000555178.5:ENST00000555880.5:ENST00000556063.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	38	2	2.43589	2.44587	2.45585	0.0370871	0.00797827	0.139194	0.0798772
chr9	33987526	33987620	4245225	0	-	0.521277	(0.515,0.57]	chr9	390457	3	INTRON	INTRON	UBAP2	ENSG00000137073.24	ENST00000379238.7:ENST00000683659.1:ENST00000682239.1:ENST00000683140.1:ENST00000682209.1:ENST00000681980.1:ENST00000360802.6:ENST00000683252.1:ENST00000684158.1:ENST00000682914.1:ENST00000683717.1:ENST00000379239.9:ENST00000683084.1:ENST00000684754.1:ENST00000629575.2:ENST00000684298.1:ENST00000412543.6:ENST00000421278.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	38	2	2.43589	2.44587	2.45585	0.0370871	0.00797827	0.139194	0.0798772
chr3	100010602	100010702	1463828	0	+	0.45	(0.44,0.476]	chr3	153488	1922	INTRON	INTRON	CMSS1	ENSG00000184220.12	ENST00000463526.1:ENST00000421999.8:ENST00000491299.5:ENST00000496116.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	69	2	1.63371	2.44586	3.25801	0.0271664	0.00248185	0.123904	0.0460771
chr22	49457505	49457605	7600654	0	-	0.33	(0.32,0.35]	chr22	778566	159	INTRON	INTRON	MIR3667HG	ENSG00000188511.13	ENST00000414287.5:ENST00000416411.1	lncRNA	lncRNA	lncRNA	lncRNA	5	82	2	2.03198	2.4458599999999997	2.85974	0.0193728	0.00186579	0.108916	0.0399675
chr4	55425994	55426084	1960904	0	+	0.3	(0.28,0.32]	chr4	196586	7	UTR3	UTR3:EXON_MRNA:INTRON	TMEM165	ENSG00000134851.13	ENST00000381334.10:ENST00000608091.1:ENST00000506103.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	157	2	2.39276	2.445825	2.49889	0.00331685	7.47369e-4	0.0512081	0.0250515
chr1	155668226	155668326	563103	0	-	0.49	(0.476,0.515]	chr1	67146	2	SS5_PROX	SS5_PROX:INTRON	YY1AP1	ENSG00000163374.20	ENST00000368339.9:ENST00000295566.8:ENST00000368330.6:ENST00000436865.5:ENST00000359205.9:ENST00000407221.5:ENST00000404643.5:ENST00000361140.8:ENST00000361831.9:ENST00000347088.9:ENST00000354691.9:ENST00000368340.9:ENST00000311573.9:ENST00000442834.6:ENST00000355499.9:ENST00000405763.7:ENST00000488784.5:ENST00000493625.5:ENST00000477470.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	43	2	2.06491	2.44582	2.82673	0.0304733	0.0134403	0.143385	0.0946278
chr13	32698748	32698844	5466448	0	+	0.5	(0.476,0.515]	chr13	523798	15	INTRON	INTRON	PDS5B	ENSG00000083642.19	ENST00000315596.15:ENST00000450460.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	43	2	2.06491	2.44582	2.82673	0.0304733	0.0134403	0.143385	0.0946278
chr1	65435211	65435311	137336	0	+	0.35	(0.32,0.35]	chr1	15494	34	UTR3	UTR3:EXON_MRNA:INTRON	LEPR:LEPROT	ENSG00000116678.20:ENSG00000213625.9	ENST00000371060.7:ENST00000371059.7:ENST00000349533.11:ENST00000371065.9:ENST00000613538.1	protein_coding	protein_coding	protein_coding	protein_coding	6	94	2	2.02327	2.445815	2.86836	0.00956045	0.00250845	0.0863913	0.0446195
chr17	39386380	39386480	6766500	0	-	0.5	(0.476,0.515]	chr17	665497	428	INTRON	INTRON	FBXL20	ENSG00000108306.13	ENST00000264658.11:ENST00000583610.5:ENST00000394294.7:ENST00000577399.5:ENST00000647139.1	protein_coding	protein_coding	protein_coding	protein_coding	3	44	2	2.40608	2.4457950000000004	2.48551	0.0425709	0.00756632	0.148082	0.0773151
chr9	34181129	34181229	4111289	0	+	0.6	(0.57,1]	chr9	374718	15	INTRON	INTRON	UBAP1	ENSG00000165006.14	ENST00000625521.2:ENST00000379186.8:ENST00000297661.9:ENST00000626262.2	protein_coding	protein_coding	protein_coding	protein_coding	6	42	2	1.94024	2.445735	2.95123	0.0116325	8.39007e-4	0.0889284	0.0263691
chr19	28420211	28420311	7165344	0	-	0.37	(0.35,0.378]	chr19	724145	3	SS3_PROX	SS3_PROX:INTRON	ENSG00000260725	ENSG00000260725.1	ENST00000567877.1	lncRNA	lncRNA	lncRNA	lncRNA	7	108	2	2.39111	2.4457050000000002	2.5003	0.00260035	0.00256148	0.0466761	0.0454405
chr12	132769944	132770039	5449593	0	-	0.578947	(0.57,1]	chr12	521960	12	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	GOLGA3	ENSG00000090615.16	ENST00000204726.9:ENST00000450791.8:ENST00000693666.1:ENST00000690057.1:ENST00000688114.1:ENST00000687190.1:ENST00000690511.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	31	2	2.38391	2.445665	2.50742	0.0104374	0.00631173	0.0902296	0.0687526
chr1	29063082	29063182	60460	0	+	0.47	(0.44,0.476]	chr1	7726	22	INTRON	INTRON	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000647918.1:ENST00000646800.1:ENST00000644342.1:ENST00000646189.1:ENST00000482464.6:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000646260.1:ENST00000373798.5:ENST00000644600.1:ENST00000649674.1:ENST00000643173.1:ENST00000343067.9:ENST00000644780.1:ENST00000650265.1:ENST00000648181.1:ENST00000643604.1:ENST00000648891.1:ENST00000373797.2:ENST00000349460.9:ENST00000645184.1:ENST00000645111.1:ENST00000643302.1:ENST00000642643.1:ENST00000636666.1:ENST00000644848.1:ENST00000644470.1:ENST00000646871.1:ENST00000488277.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	117	2	1.98148	2.44564	2.9098	0.00431586	4.57573e-4	0.0599409	0.0197167
chr20	3978994	3979094	7309042	0	-	0.55	(0.515,0.57]	chr20	744300	42	INTRON	INTRON	RNF24	ENSG00000101236.17	ENST00000336095.10:ENST00000358395.11:ENST00000545616.2	protein_coding	protein_coding	protein_coding	protein_coding	5	60	2	2.15866	2.44562	2.73258	0.0100547	0.00260192	0.0848452	0.0470772
chr2	239974937	239975034	1345208	0	-	0.443299	(0.44,0.476]	chr2	141037	9	INTRON	INTRON	NDUFA10	ENSG00000130414.13	ENST00000419408.5:ENST00000679183.1:ENST00000677057.1:ENST00000676782.1:ENST00000677407.1:ENST00000676929.1:ENST00000678455.1:ENST00000252711.7:ENST00000677692.1:ENST00000476216.6:ENST00000677395.1:ENST00000678188.1:ENST00000677979.1:ENST00000678914.1:ENST00000678562.1:ENST00000678832.1:ENST00000677155.1:ENST00000677764.1:ENST00000677294.1:ENST00000678468.1:ENST00000677324.1:ENST00000678158.1:ENST00000676491.1:ENST00000471378.1:ENST00000677114.1:ENST00000404554.5:ENST00000620965.5:ENST00000485344.6:ENST00000679308.1:ENST00000677567.1:ENST00000679158.1:ENST00000443626.5:ENST00000444548.6:ENST00000448880.6:ENST00000677490.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	61	2	2.14573	2.445595	2.74546	0.0238593	0.00326603	0.129075	0.0508595
chr5	119113176	119113275	2460190	0	+	0.373737	(0.35,0.378]	chr5	235613	25	INTRON	INTRON	DMXL1	ENSG00000172869.15	ENST00000539542.6:ENST00000503802.5:ENST00000311085.8:ENST00000514151.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	47	2	2.2877	2.4455549999999997	2.60341	0.0275785	0.0155765	0.123904	0.109411
chr8	60531752	60531852	3757948	0	+	0.38	(0.378,0.408]	chr8	349495	141	INTRON	INTRON	RAB2A	ENSG00000104388.15	ENST00000531289.5:ENST00000262646.12:ENST00000481569.1:ENST00000529579.5:ENST00000466595.5:ENST00000429861.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	73	2	1.90812	2.445535	2.98295	0.0264295	9.47389e-4	0.122506	0.0282007
chr1	26932960	26933060	52869	0	+	0.48	(0.476,0.515]	chr1	6762	84	INTRON	INTRON	NUDC	ENSG00000090273.14	ENST00000435827.6:ENST00000321265.10:ENST00000452707.1	protein_coding	protein_coding	protein_coding	protein_coding	2	32	2	2.3223	2.44549	2.56868	0.0519312	0.0256676	0.159306	0.133676
chr10	12021962	12022062	4557572	0	-	0.49	(0.476,0.515]	chr10	420618	74	INTRON	INTRON	UPF2	ENSG00000151461.20	ENST00000357604.10:ENST00000356352.6:ENST00000397053.6	protein_coding	protein_coding	protein_coding	protein_coding	2	32	2	2.3223	2.44549	2.56868	0.0519312	0.0256676	0.159306	0.133676
chr10	21536671	21536769	4404430	0	+	0.510204	(0.476,0.515]	chr10	406413	15	INTRON	INTRON	MLLT10	ENSG00000078403.17	ENST00000651097.1:ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000377100.8:ENST00000377091.7:ENST00000650772.1:ENST00000651298.1:ENST00000471315.5:ENST00000652497.1:ENST00000495130.5:ENST00000377059.7:ENST00000621220.4:ENST00000476557.5:ENST00000462999.5:ENST00000430455.2:ENST00000479634.1:ENST00000480415.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	32	2	2.3223	2.44549	2.56868	0.0519312	0.0256676	0.159306	0.133676
chr16	89812277	89812373	6544785	0	-	0.489583	(0.476,0.515]	chr16	634616	8	INTRON	INTRON	FANCA	ENSG00000187741.16	ENST00000561667.2:ENST00000389301.8:ENST00000568369.6:ENST00000564475.6:ENST00000696275.1:ENST00000696287.1:ENST00000696286.1:ENST00000696291.1:ENST00000696276.1:ENST00000567205.2:ENST00000567284.7:ENST00000696277.1:ENST00000696292.1:ENST00000563767.2:ENST00000567621.6:ENST00000696288.1:ENST00000696293.1:ENST00000566889.5:ENST00000389302.7:ENST00000696294.1:ENST00000696295.1:ENST00000563673.5:ENST00000543736.5:ENST00000534992.5:ENST00000565582.5:ENST00000696296.1:ENST00000563513.1:ENST00000567883.5:ENST00000567943.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	32	2	2.3223	2.44549	2.56868	0.0519312	0.0256676	0.159306	0.133676
chr3	32738984	32739084	1393666	0	+	0.5	(0.476,0.515]	chr3	145926	11	INTRON	INTRON	CNOT10	ENSG00000182973.20	ENST00000331889.10:ENST00000328834.10:ENST00000435630.5:ENST00000454516.7:ENST00000416457.5:ENST00000430408.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	32	2	2.3223	2.44549	2.56868	0.0519312	0.0256676	0.159306	0.133676
chr8	67210283	67210383	3962449	0	-	0.49	(0.476,0.515]	chr8	363563	32	INTRON	INTRON	ARFGEF1	ENSG00000066777.9	ENST00000520381.5:ENST00000518789.5:ENST00000262215.8:ENST00000518230.5	protein_coding	protein_coding	protein_coding	protein_coding	2	32	2	2.3223	2.44549	2.56868	0.0519312	0.0256676	0.159306	0.133676
chr17	44679813	44679903	6780914	0	-	0.588889	(0.57,1]	chr17	668714	4	INTRON	INTRON	CCDC43	ENSG00000180329.14	ENST00000588687.5:ENST00000457422.6:ENST00000315286.13:ENST00000588210.1	protein_coding	protein_coding	protein_coding	protein_coding	4	29	2	2.09207	2.44548	2.79889	0.0121228	0.0110274	0.0927187	0.090965
chrX	134426121	134426219	7724040	0	+	0.346939	(0.32,0.35]	chrX	790147	9	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	PHF6	ENSG00000156531.18	ENST00000687496.1:ENST00000685553.1:ENST00000625464.2:ENST00000370803.8:ENST00000332070.7:ENST00000691812.1:ENST00000688598.1:ENST00000693759.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	71	2	2.19668	2.4454450000000003	2.69421	0.021398	0.00484681	0.123719	0.0605691
chr1	86883100	86883199	498800	0	-	0.313131	(0.28,0.32]	chr1	59190	20	INTRON	INTRON	SELENOF	ENSG00000183291.18	ENST00000331835.10:ENST00000370554.5:ENST00000648872.1:ENST00000469566.5:ENST00000401030.4:ENST00000497861.5:ENST00000467557.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	137	2	2.24209	2.445415	2.64874	0.0025277	0.00235868	0.0465056	0.0436827
chr10	71818316	71818416	4642495	0	-	0.32	(0.28,0.32]	chr10	427111	3	SS5_PROX	SS5_PROX:INTRON	PSAP	ENSG00000197746.15	ENST00000394936.8	protein_coding	protein_coding	protein_coding	protein_coding	8	132	2	2.41879	2.44541	2.47203	0.0114089	6.86623e-4	0.0886611	0.0238954
chr1	100507621	100507720	174202	0	+	0.373737	(0.35,0.378]	chr1	18914	23	INTRON	INTRON	CDC14A	ENSG00000079335.20	ENST00000647005.1:ENST00000336454.5:ENST00000644813.1	protein_coding	protein_coding	protein_coding	protein_coding	3	47	2	2.10859	2.445355	2.78212	0.0272722	0.0168532	0.136494	0.103549
chr8	128090846	128090946	3863062	0	+	0.51	(0.476,0.515]	chr8	355600	2	SS3_PROX	SS3_PROX:INTRON	PVT1	ENSG00000249859.13	ENST00000667305.1:ENST00000690350.1:ENST00000653522.1:ENST00000661830.1:ENST00000657289.1:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000657211.1:ENST00000653845.1:ENST00000651587.1:ENST00000692980.1:ENST00000654324.1:ENST00000657693.1:ENST00000666080.1:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000662410.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000657356.1:ENST00000657449.1:ENST00000656402.1:ENST00000667714.1:ENST00000654105.1:ENST00000664995.1:ENST00000670714.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000668123.1:ENST00000666776.1:ENST00000659912.1:ENST00000670532.1:ENST00000523068.2:ENST00000671088.1:ENST00000663461.1:ENST00000513868.6:ENST00000692433.1:ENST00000523190.7:ENST00000685606.1:ENST00000690788.1:ENST00000685634.1:ENST00000653990.1:ENST00000655783.1:ENST00000656411.1:ENST00000664742.1:ENST00000655099.1:ENST00000662709.1:ENST00000512617.7:ENST00000660122.1:ENST00000666452.1:ENST00000659666.1:ENST00000659892.1:ENST00000521600.5:ENST00000522875.5:ENST00000653497.1:ENST00000668098.1:ENST00000659106.1:ENST00000666147.1:ENST00000658350.1:ENST00000656999.1:ENST00000671092.1:ENST00000653853.1:ENST00000652492.1:ENST00000658429.1:ENST00000660781.1:ENST00000660912.1:ENST00000650930.1:ENST00000663715.1:ENST00000652883.1:ENST00000657844.1:ENST00000660659.1:ENST00000661391.1:ENST00000660146.1:ENST00000671587.1:ENST00000658018.1:ENST00000666878.1:ENST00000652993.1:ENST00000658305.1:ENST00000656077.1:ENST00000666039.1:ENST00000668619.1:ENST00000668479.1:ENST00000660069.1:ENST00000658158.1:ENST00000652728.1:ENST00000653608.1:ENST00000669509.1:ENST00000522414.2:ENST00000670535.1:ENST00000670009.1:ENST00000668215.1:ENST00000668351.1:ENST00000657682.1:ENST00000657945.1:ENST00000658065.1:ENST00000655148.1:ENST00000666223.1:ENST00000666105.1:ENST00000668480.1:ENST00000665175.1	lncRNA	lncRNA	lncRNA	lncRNA	3	46	2	2.41121	2.4453500000000004	2.47949	0.0326974	0.0110342	0.145164	0.0873897
chr8	29049801	29049901	3726467	0	+	0.45	(0.44,0.476]	chr8	346324	2	SS3_PROX	SS3_PROX:SS5_PROX:INTRON	HMBOX1	ENSG00000147421.18	ENST00000287701.15:ENST00000397358.7:ENST00000521516.5:ENST00000519047.5:ENST00000355231.9:ENST00000524238.3:ENST00000517386.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	106	2	1.49932	2.445345	3.39137	0.0238667	1.73175e-4	0.129075	0.0120833
chr10	922484	922584	4542495	0	-	0.47	(0.44,0.476]	chr10	419304	191	INTRON	INTRON	LARP4B	ENSG00000107929.16	ENST00000316157.8:ENST00000690516.1:ENST00000476529.5:ENST00000406525.6:ENST00000481118.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	100	2	2.38763	2.4453	2.50297	0.00394089	0.00135188	0.0573041	0.0336321
chr1	90967661	90967761	501982	0	-	0.42	(0.408,0.44]	chr1	59492	260	INTRON	INTRON	ZNF644	ENSG00000122482.22	ENST00000370440.5:ENST00000337393.10:ENST00000347275.9:ENST00000361321.5:ENST00000467231.5:ENST00000498303.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	81	2	2.35743	2.44528	2.53313	0.00739595	0.00206746	0.074277	0.0421756
chr7	155779212	155779311	3453268	0	+	0.464646	(0.44,0.476]	chr7	322755	42	UTR3	UTR3:EXON_MRNA	RBM33	ENSG00000184863.11	ENST00000401878.8:ENST00000341148.7	protein_coding	protein_coding	protein_coding	protein_coding	7	89	2	1.85696	2.44523	3.0335	0.0107727	9.65686e-4	0.0920575	0.0282401
chr5	150025832	150025925	2518918	0	+	0.55914	(0.515,0.57]	chr5	240794	8	INTRON	INTRON	HMGXB3	ENSG00000113716.13	ENST00000613459.4:ENST00000503427.5:ENST00000502717.6	protein_coding	protein_coding	protein_coding	protein_coding	3	38	2	1.86007	2.44522	3.03037	0.0526611	0.00608732	0.178401	0.0676501
chr3	6585247	6585347	1357096	0	+	0.39	(0.378,0.408]	chr3	142522	8	INTRON	INTRON	ENSG00000189229	ENSG00000189229.12	ENST00000433639.1:ENST00000655754.1:ENST00000658468.1:ENST00000669512.1:ENST00000667028.1:ENST00000655541.1:ENST00000668643.1:ENST00000671568.1:ENST00000671036.1:ENST00000669798.1:ENST00000655753.1:ENST00000655856.1:ENST00000658398.1:ENST00000661518.1:ENST00000661279.1:ENST00000655495.1:ENST00000663041.1:ENST00000659827.1:ENST00000667716.1:ENST00000668416.1:ENST00000658133.1:ENST00000342990.4:ENST00000660054.1:ENST00000671370.1	lncRNA	lncRNA	lncRNA	lncRNA	14	191	2	2.10047	2.44517	2.78987	0.00149492	1.03325e-4	0.0350924	0.00862029
chr8	55746243	55746341	3954389	0	-	0.408163	(0.378,0.408]	chr8	362666	3	INTRON	INTRON	TMEM68	ENSG00000167904.16	ENST00000522470.1:ENST00000617782.4:ENST00000334667.6:ENST00000434581.7:ENST00000519784.5:ENST00000517576.5:ENST00000523073.5:ENST00000519780.5:ENST00000522090.5:ENST00000520061.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	45	2	2.35527	2.44515	2.53503	0.0319942	0.0121511	0.13174	0.0963966
chr2	108775331	108775431	847992	0	+	0.45	(0.44,0.476]	chr2	94900	2	SS3_PROX	SS3_PROX:INTRON	RANBP2	ENSG00000153201.16	ENST00000283195.11	protein_coding	protein_coding	protein_coding	protein_coding	4	58	2	2.29126	2.44507	2.59888	0.0165638	0.00487719	0.102621	0.0640618
chr3	183730047	183730147	1580617	0	+	0.37	(0.35,0.378]	chr3	163056	8	INTRON	INTRON	YEATS2	ENSG00000163872.16	ENST00000305135.10	protein_coding	protein_coding	protein_coding	protein_coding	8	119	2	1.6622	2.4450149999999997	3.22783	0.0263261	6.11389e-5	0.122221	0.00646768
chr6	35843303	35843403	3088026	0	-	0.24	[0,0.28]	chr6	288820	3	INTRON	INTRON	SRPK1	ENSG00000096063.16	ENST00000373825.7:ENST00000423325.6:ENST00000346162.10:ENST00000361690.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	117	2	2.11955	2.44501	2.77047	0.00795999	0.00505301	0.0798772	0.0621733
chr2	61499413	61499512	1130819	0	-	0.272727	[0,0.28]	chr2	121579	1	SS5_PROX	SS5_PROX:INTRON	XPO1	ENSG00000082898.19	ENST00000677110.1:ENST00000678113.1:ENST00000676553.1:ENST00000677556.1:ENST00000677814.1:ENST00000676771.1:ENST00000677803.1:ENST00000677239.1:ENST00000678790.1:ENST00000677928.1:ENST00000678182.1:ENST00000677150.1:ENST00000678172.1:ENST00000678360.1:ENST00000678081.1:ENST00000676889.1:ENST00000676783.1:ENST00000679035.1:ENST00000677422.1:ENST00000677417.1:ENST00000677813.1:ENST00000676999.1:ENST00000676667.1:ENST00000678263.1:ENST00000678877.1:ENST00000677933.1:ENST00000680228.1:ENST00000677289.1:ENST00000677190.1:ENST00000481073.6:ENST00000677476.1:ENST00000401558.7:ENST00000428210.5:ENST00000677290.1:ENST00000677850.1:ENST00000676778.1:ENST00000451765.6:ENST00000676789.1:ENST00000678741.1:ENST00000404992.6:ENST00000406957.5:ENST00000677157.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	62	2	2.20073	2.444955	2.68918	0.0275571	0.0235708	0.128907	0.123904
chr21	38072159	38072259	7463603	0	-	0.28	[0,0.28]	chr21	760281	170	INTRON	INTRON	DSCR4	ENSG00000184029.9	ENST00000398948.5:ENST00000328264.7	lncRNA	lncRNA	lncRNA	lncRNA	3	62	2	2.20073	2.444955	2.68918	0.0275571	0.0235708	0.128907	0.123904
chr7	139415829	139415927	3438162	0	+	0.357143	(0.35,0.378]	chr7	320377	29	INTRON	INTRON	LUC7L2:FMC1-LUC7L2	ENSG00000146963.18:ENSG00000269955.2	ENST00000541170.7:ENST00000541515.3:ENST00000619796.4:ENST00000354926.9:ENST00000456182.5:ENST00000263545.7:ENST00000498518.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	48	2	2.09331	2.44487	2.79643	0.0315717	0.013543	0.13151	0.101363
chr15	34406473	34406573	6132951	0	-	0.38	(0.378,0.408]	chr15	584271	4	SS5_PROX	SS5_PROX:INTRON	GOLGA8A	ENSG00000175265.18	ENST00000359187.5:ENST00000473125.5:ENST00000569781.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	45	2	2.04292	2.444775	2.84663	0.0326035	0.0133954	0.145164	0.0946278
chr4	126592499	126592599	2236634	0	-	0.29	(0.28,0.32]	chr4	219023	1270	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	8	138	2	2.40876	2.4447200000000002	2.48068	0.00588618	8.18184e-4	0.0669992	0.0261438
chr6	147321576	147321676	2989895	0	+	0.29	(0.28,0.32]	chr6	280084	48	INTRON	INTRON	STXBP5	ENSG00000164506.15	ENST00000321680.11:ENST00000367481.7:ENST00000367480.7	protein_coding	protein_coding	protein_coding	protein_coding	3	55	2	1.91611	2.44472	2.97333	0.0539102	0.00857834	0.164153	0.083729
chr7	99086316	99086416	3582565	0	-	0.32	(0.28,0.32]	chr7	333700	50	INTRON	INTRON	SMURF1	ENSG00000198742.10	ENST00000361368.7:ENST00000361125.1:ENST00000472627.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	55	2	1.91611	2.44472	2.97333	0.0539102	0.00857834	0.164153	0.083729
chr13	25333313	25333413	5457507	0	+	0.41	(0.408,0.44]	chr13	522955	14	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	NUP58	ENSG00000139496.17	ENST00000481980.2:ENST00000490231.6:ENST00000695571.1:ENST00000477876.2:ENST00000695572.1:ENST00000463407.6:ENST00000695573.1:ENST00000381736.8:ENST00000466694.6:ENST00000381718.8:ENST00000695575.1:ENST00000695574.1:ENST00000381747.7:ENST00000695576.1:ENST00000394327.2:ENST00000695577.1:ENST00000695584.1:ENST00000476553.2:ENST00000695585.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	61	2	2.04842	2.444595	2.84077	0.0132196	0.00797555	0.0940535	0.0798772
chr22	29697698	29697798	7497484	0	+	0.54	(0.515,0.57]	chr22	765005	30	UTR3	UTR3:EXON_MRNA	NF2	ENSG00000186575.19	ENST00000413209.6:ENST00000361452.8:ENST00000338641.10:ENST00000672896.1	protein_coding	protein_coding	protein_coding	protein_coding	6	71	2	2.261	2.444585	2.62817	0.004048	0.00333544	0.0578376	0.0512081
chr3	180945375	180945474	1568937	0	+	0.373737	(0.35,0.378]	chr3	162382	98	INTRON	INTRON	FXR1	ENSG00000114416.18	ENST00000469882.5:ENST00000484790.5:ENST00000465551.5:ENST00000305586.11:ENST00000475315.5:ENST00000357559.9:ENST00000468861.5:ENST00000491062.5:ENST00000479176.5:ENST00000445140.6:ENST00000472339.5:ENST00000484958.5:ENST00000480918.5:ENST00000484042.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	154	2	1.87733	2.44453	3.01173	0.012522	2.94707e-5	0.0925829	0.00431591
chr7	128016134	128016234	3406068	0	+	0.41	(0.408,0.44]	chr7	318194	76	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000486037.1:ENST00000484767.5:ENST00000470723.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	97	2	1.97721	2.444385	2.91156	0.0121661	3.17111e-4	0.0910127	0.0159645
chr5	138167227	138167295	2731302	0	-	0.455882	(0.44,0.476]	chr5	257140	1	INTRON	INTRON	BRD8	ENSG00000112983.18	ENST00000254900.10:ENST00000402931.5:ENST00000230901.9:ENST00000454473.5:ENST00000418329.5:ENST00000441656.5:ENST00000411594.6:ENST00000512140.5:ENST00000453824.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	19	253	2	2.05041	2.444355	2.8383	0.00140026	8.58838e-6	0.0340865	0.00210871
chr4	38944052	38944152	1949751	0	+	0.43	(0.408,0.44]	chr4	195190	6	UTR3	UTR3:EXON_MRNA	FAM114A1	ENSG00000197712.12	ENST00000358869.5	protein_coding	protein_coding	protein_coding	protein_coding	6	87	2	1.92319	2.444255	2.96532	0.0247322	2.36857e-4	0.12011	0.0136195
chr3	73047856	73047955	1452468	0	+	0.464646	(0.44,0.476]	chr3	152969	1	INTRON	INTRON	PPP4R2	ENSG00000163605.15	ENST00000482242.5:ENST00000356692.10:ENST00000470976.1:ENST00000488810.5:ENST00000476505.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	58	2	2.33899	2.444215	2.54944	0.0142027	0.00591346	0.0959987	0.0694038
chr21	9343407	9343507	7367566	0	+	0.32	(0.28,0.32]	chr21	751928	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	ENSG00000278932	ENSG00000278932.5	ENST00000622961.3:ENST00000686553.1:ENST00000691955.1:ENST00000625153.3:ENST00000692626.1:ENST00000685951.1:ENST00000686510.1:ENST00000692884.1	lncRNA	lncRNA	lncRNA	lncRNA	5	89	2	2.41625	2.44414	2.47203	0.0114089	0.00419958	0.0886611	0.0592209
chr19	11129250	11129350	7017239	0	+	0.52	(0.515,0.57]	chr19	697512	4	SS3_PROX	SS3_PROX:INTRON	LDLR	ENSG00000130164.14	ENST00000557933.5:ENST00000558518.6:ENST00000545707.5:ENST00000535915.5:ENST00000455727.6:ENST00000558013.5:ENST00000252444.9:ENST00000560628.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	50	2	2.3252100000000002	2.444135	2.56306	0.0247751	0.00525266	0.131869	0.0633615
chr17	28596864	28596964	6744641	0	-	0.52	(0.515,0.57]	chr17	662460	34	INTRON	INTRON	SPAG5	ENSG00000076382.17	ENST00000321765.10:ENST00000578479.1:ENST00000580567.6:ENST00000536674.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	51	2	1.7407	2.444	3.1473	0.0242347	0.00397184	0.130613	0.0549214
chr1	17424756	17424850	384835	0	-	0.553191	(0.515,0.57]	chr1	45481	16	INTRON	INTRON	RCC2	ENSG00000179051.14	ENST00000375436.9:ENST00000375433.3	protein_coding	protein_coding	protein_coding	protein_coding	8	91	2	2.31075	2.44394	2.57713	0.00176427	0.00124389	0.0376652	0.0328153
chr17	78158568	78158668	6681804	0	+	0.52	(0.515,0.57]	chr17	652640	113	INTRON	INTRON	C17orf99	ENSG00000187997.12	ENST00000340363.10:ENST00000586999.2:ENST00000591995.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	69	2	2.05789	2.443915	2.82994	0.00786509	0.00168661	0.076155	0.0381778
chr6	80034484	80034584	2907889	0	+	0.46	(0.44,0.476]	chr6	274759	1	SS3_PROX	SS3_PROX:INTRON	TTK	ENSG00000112742.10	ENST00000509894.5:ENST00000230510.7:ENST00000369798.7	protein_coding	protein_coding	protein_coding	protein_coding	4	55	2	2.42643	2.4438899999999997	2.46135	0.0374637	0.0033369	0.140008	0.0528877
chr16	74600365	74600465	6525265	0	-	0.43	(0.408,0.44]	chr16	631842	372	INTRON	INTRON	GLG1	ENSG00000090863.12	ENST00000205061.9:ENST00000422840.7:ENST00000447066.6:ENST00000562090.5:ENST00000567951.5:ENST00000627032.2:ENST00000565260.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	98	2	2.06309	2.44385	2.82461	0.00294584	0.00241819	0.0497776	0.0442901
chr22	21790891	21790990	7560615	0	-	0.383838	(0.378,0.408]	chr22	773370	17	INTRON	INTRON	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	14	141	2	1.42506	2.443785	3.46251	0.0152835	1.37139e-4	0.108569	0.0106749
chr7	105050396	105050496	3374986	0	+	0.35	(0.32,0.35]	chr7	315877	90	INTRON	INTRON	KMT2E	ENSG00000005483.22	ENST00000622386.2:ENST00000257745.9:ENST00000334884.9:ENST00000311117.8:ENST00000478990.5:ENST00000495267.5:ENST00000476671.5:ENST00000667857.1:ENST00000474203.5:ENST00000482560.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	141	2	1.91345	2.44362	2.97379	0.0029587	0.00164543	0.0499846	0.0369207
chr1	120160830	120160930	533677	0	-	0.42	(0.408,0.44]	chr1	62773	3	SS3_PROX	SS3_PROX:INTRON	SEC22B	ENSG00000265808.4	ENST00000578049.4	protein_coding	protein_coding	protein_coding	protein_coding	10	134	2	2.3014	2.4436150000000003	2.58583	9.38868e-4	8.86465e-4	0.0280776	0.0271952
chr9	131402047	131402147	4217049	0	+	0.49	(0.476,0.515]	chr9	386720	74	INTRON	INTRON	PRRC2B	ENSG00000288701.1	ENST00000682525.1:ENST00000684596.1:ENST00000683519.1:ENST00000682501.1	protein_coding	protein_coding	protein_coding	protein_coding	7	100	2	2.3346	2.44348	2.55236	0.00494807	0.00104106	0.0646039	0.0293739
chr1	226063781	226063828	327777	0	+	0.425532	(0.408,0.44]	chr1	37742	1	SS5_PROX	SS5_PROX:INTRON	H3-3A	ENSG00000163041.13	ENST00000366816.5:ENST00000366814.3:ENST00000366815.10:ENST00000653960.1:ENST00000655399.1:ENST00000667897.1:ENST00000656829.1:ENST00000666609.1:ENST00000661429.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	11	151	2	2.15238	2.44347	2.73456	0.00382586	7.1837e-5	0.0542786	0.00705244
chr14	102608719	102608819	5822694	0	+	0.46	(0.44,0.476]	chr14	552490	150	INTRON	INTRON	RCOR1	ENSG00000089902.10	ENST00000262241.7	protein_coding	protein_coding	protein_coding	protein_coding	7	96	2	2.03286	2.4434649999999998	2.85407	0.00977911	4.30929e-4	0.0835427	0.018618
chr11	66618050	66618136	4810810	0	+	0.360465	(0.35,0.378]	chr11	447846	1	SS3_PROX	SS3_PROX:INTRON	RBM14-RBM4:RBM14	ENSG00000248643.5:ENSG00000239306.5	ENST00000412278.2:ENST00000393979.3:ENST00000511114.1:ENST00000310137.5:ENST00000409372.1:ENST00000421355.1:ENST00000443702.1:ENST00000500635.2:ENST00000409738.4:ENST00000460762.1:ENST00000461478.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	26	367	2	2.21363	2.4434500000000003	2.67327	1.52032e-4	6.21361e-5	0.0106137	0.0069723
chr15	48337575	48337673	6018870	0	+	0.27551	[0,0.28]	chr15	573629	11	INTRON	INTRON	DUT	ENSG00000128951.14	ENST00000559935.5:ENST00000559416.5:ENST00000558813.5:ENST00000331200.8:ENST00000558472.5:ENST00000558978.5:ENST00000455976.6:ENST00000559540.5:ENST00000558367.1:ENST00000561350.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	47	2	2.29142	2.44345	2.59548	0.0592143	0.0346067	0.189982	0.136649
chr2	201061006	201061106	1311791	0	-	0.24	[0,0.28]	chr2	137310	3	SS5_PROX	SS5_PROX:INTRON	FAM126B	ENSG00000155744.10	ENST00000681958.1:ENST00000418596.7:ENST00000286181.7:ENST00000498780.5:ENST00000452799.5:ENST00000453765.5:ENST00000446678.5:ENST00000474118.5:ENST00000485636.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	47	2	2.29142	2.44345	2.59548	0.0592143	0.0346067	0.189982	0.136649
chr11	63683176	63683276	4799930	0	+	0.4	(0.378,0.408]	chr11	444936	10	INTRON	INTRON	RTN3	ENSG00000133318.14	ENST00000341307.6:ENST00000356000.7:ENST00000542238.5:ENST00000538995.1:ENST00000339997.8:ENST00000540798.5:ENST00000537981.5:ENST00000377819.10:ENST00000536011.5:ENST00000543123.1:ENST00000543552.5:ENST00000545432.5:ENST00000338850.5:ENST00000354497.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	69	2	1.78414	2.44344	3.10274	0.0144669	0.00586642	0.105142	0.0668095
chr6	143197890	143197990	2976563	0	+	0.36	(0.35,0.378]	chr6	279161	74	INTRON	INTRON	AIG1	ENSG00000146416.19	ENST00000367601.8:ENST00000447498.5:ENST00000646199.1:ENST00000357847.9:ENST00000275235.8:ENST00000458219.1	protein_coding	protein_coding	protein_coding	protein_coding	5	82	2	2.34278	2.44336	2.54394	0.0129593	0.0028214	0.0991015	0.0472361
chr1	155663793	155663892	563058	0	-	0.363636	(0.35,0.378]	chr1	67145	20	INTRON	INTRON	YY1AP1	ENSG00000163374.20	ENST00000368339.9:ENST00000295566.8:ENST00000368330.6:ENST00000436865.5:ENST00000359205.9:ENST00000407221.5:ENST00000404643.5:ENST00000361140.8:ENST00000361831.9:ENST00000347088.9:ENST00000354691.9:ENST00000368340.9:ENST00000311573.9:ENST00000442834.6:ENST00000355499.9:ENST00000405763.7:ENST00000488784.5:ENST00000493625.5:ENST00000477470.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	35	2	2.1617	2.44334	2.72498	0.0771502	0.0168499	0.196285	0.11068
chr21	9357008	9357108	7367703	0	+	0.35	(0.32,0.35]	chr21	751936	28	INTRON	INTRON	ENSG00000278932	ENSG00000278932.5	ENST00000622961.3:ENST00000686553.1:ENST00000691955.1:ENST00000692626.1:ENST00000685951.1:ENST00000686510.1:ENST00000692884.1	lncRNA	lncRNA	lncRNA	lncRNA	2	38	2	2.31405	2.44334	2.57263	0.0517107	0.0312297	0.176696	0.13151
chr3	33669604	33669703	1653517	0	-	0.353535	(0.35,0.378]	chr3	169658	57	INTRON	INTRON	CLASP2	ENSG00000163539.18	ENST00000399362.8:ENST00000682230.1:ENST00000468888.6:ENST00000359576.9	protein_coding	protein_coding	protein_coding	protein_coding	2	35	2	2.1617	2.44334	2.72498	0.0771502	0.0168499	0.196285	0.11068
chr3	185678302	185678401	1884873	0	-	0.363636	(0.35,0.378]	chr3	188536	20	INTRON	INTRON	IGF2BP2	ENSG00000073792.16	ENST00000382199.7:ENST00000346192.7:ENST00000457616.6:ENST00000421047.3:ENST00000494906.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	35	2	2.1617	2.44334	2.72498	0.0771502	0.0168499	0.196285	0.11068
chr14	58261320	58261420	5731074	0	+	0.43	(0.408,0.44]	chr14	544105	3	SS5_PROX	SS5_PROX:INTRON	PSMA3	ENSG00000100567.13	ENST00000216455.9:ENST00000554812.5:ENST00000557087.5:ENST00000555931.5:ENST00000412908.6:ENST00000555743.1:ENST00000557508.5:ENST00000553677.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	44	2	2.43988	2.4433100000000003	2.44674	0.0398236	0.00868283	0.143072	0.0842798
chr2	15501257	15501356	1072560	0	-	0.323232	(0.32,0.35]	chr2	114429	119	INTRON	INTRON	NBAS	ENSG00000151779.13	ENST00000281513.10:ENST00000427792.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	70	2	1.98909	2.44326	2.89743	0.0127608	0.0108865	0.0926667	0.0923273
chr6	34423678	34423776	3085090	0	-	0.520408	(0.515,0.57]	chr6	288655	15	INTRON	INTRON	RPS10-NUDT3:RPS10	ENSG00000270800.3:ENSG00000124614.16	ENST00000639725.1:ENST00000639877.1:ENST00000605528.2:ENST00000648437.1:ENST00000644700.1:ENST00000344700.8:ENST00000621356.3:ENST00000467531.5:ENST00000464218.5:ENST00000644393.1:ENST00000494077.6	protein_coding	protein_coding	protein_coding	protein_coding	23	284	2	2.08842	2.44326	2.7981	6.41796e-4	4.15438e-6	0.0228958	0.00147731
chr1	36242422	36242521	73111	0	+	0.454545	(0.44,0.476]	chr1	9371	166	INTRON	INTRON	THRAP3	ENSG00000054118.15	ENST00000469141.6:ENST00000648638.1:ENST00000354618.10	protein_coding	protein_coding	protein_coding	protein_coding	3	43	2	2.21079	2.4432549999999997	2.67572	0.0212064	0.0194581	0.119831	0.113017
chr4	39955541	39955641	2131981	0	-	0.45	(0.44,0.476]	chr4	210242	270	INTRON	INTRON	PDS5A	ENSG00000121892.15	ENST00000303538.13:ENST00000503396.5	protein_coding	protein_coding	protein_coding	protein_coding	3	43	2	2.21079	2.4432549999999997	2.67572	0.0212064	0.0194581	0.119831	0.113017
chr2	38750601	38750694	1099877	0	-	0.634409	(0.57,1]	chr2	118013	4	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SRSF7	ENSG00000115875.19	ENST00000446327.6:ENST00000313117.11:ENST00000425778.5:ENST00000425941.6:ENST00000409276.5:ENST00000431066.5:ENST00000443213.5:ENST00000415527.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	16	119	2	2.15745	2.44324	2.72903	0.00148877	4.11708e-6	0.035553	0.00146847
chr2	38301424	38301523	1098570	0	-	0.464646	(0.44,0.476]	chr2	117813	7	INTRON	INTRON	ATL2	ENSG00000119787.14	ENST00000378954.9:ENST00000406122.5:ENST00000405384.6:ENST00000402054.5:ENST00000419554.6:ENST00000651368.1:ENST00000452935.6:ENST00000629272.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	43	2	2.14573	2.44318	2.74063	0.0238593	0.0176095	0.129075	0.105143
chrX	24077363	24077460	7630970	0	+	0.360825	(0.35,0.378]	chrX	781497	7	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	EIF2S3	ENSG00000130741.11	ENST00000253039.9:ENST00000457332.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	17	248	2	2.40422	2.4430750000000003	2.48193	4.64076e-4	1.14575e-4	0.0199099	0.00916192
chr1	29062982	29063082	60459	0	+	0.34	(0.32,0.35]	chr1	7726	21	INTRON	INTRON	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000647918.1:ENST00000646800.1:ENST00000644342.1:ENST00000646189.1:ENST00000482464.6:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000646260.1:ENST00000373798.5:ENST00000644600.1:ENST00000649674.1:ENST00000643173.1:ENST00000343067.9:ENST00000644780.1:ENST00000650265.1:ENST00000648181.1:ENST00000643604.1:ENST00000648891.1:ENST00000373797.2:ENST00000349460.9:ENST00000645184.1:ENST00000645111.1:ENST00000643302.1:ENST00000642643.1:ENST00000636666.1:ENST00000644848.1:ENST00000644470.1:ENST00000646871.1:ENST00000488277.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	14	214	2	2.43117	2.443065	2.45496	0.00129351	1.83984e-4	0.0329329	0.0118147
chr8	101982677	101982777	4009280	0	-	0.52	(0.515,0.57]	chr8	366842	75	INTRON	INTRON	NCALD	ENSG00000104490.18	ENST00000395923.5:ENST00000311028.4:ENST00000521599.5:ENST00000518727.5:ENST00000520425.5:ENST00000518166.5:ENST00000517822.5:ENST00000524209.5:ENST00000517531.5:ENST00000521964.5:ENST00000523923.5:ENST00000518661.5:ENST00000522206.5:ENST00000522078.5:ENST00000518952.5:ENST00000517639.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	55	2	2.27709	2.44304	2.60899	0.0232669	0.00275782	0.118148	0.0486216
chr1	28976636	28976736	59577	0	+	0.51	(0.476,0.515]	chr1	7621	615	INTRON	INTRON	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000647918.1:ENST00000646800.1:ENST00000644342.1:ENST00000646189.1:ENST00000482464.6:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000646260.1:ENST00000373798.5:ENST00000644600.1:ENST00000649674.1:ENST00000643173.1:ENST00000343067.9:ENST00000644780.1:ENST00000650265.1:ENST00000648181.1:ENST00000643604.1:ENST00000648891.1:ENST00000373797.2:ENST00000349460.9:ENST00000645184.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	32	2	2.23335	2.443015	2.65268	0.0634557	0.0201975	0.177047	0.121243
chr10	118690964	118691064	4703769	0	-	0.49	(0.476,0.515]	chr10	433852	3	SS5_PROX	SS5_PROX:INTRON	CACUL1	ENSG00000151893.15	ENST00000544392.5:ENST00000369151.8:ENST00000493518.5:ENST00000489169.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	32	2	2.23335	2.443015	2.65268	0.0634557	0.0201975	0.177047	0.121243
chr15	43510450	43510532	6162029	0	-	0.487805	(0.476,0.515]	chr15	586814	2	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	TP53BP1	ENSG00000067369.14	ENST00000263801.7:ENST00000477089.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	32	2	2.23335	2.443015	2.65268	0.0634557	0.0201975	0.177047	0.121243
chr16	28141505	28141605	6467743	0	-	0.48	(0.476,0.515]	chr16	624526	58	INTRON	INTRON	XPO6	ENSG00000169180.12	ENST00000304658.10:ENST00000565698.5:ENST00000563138.5:ENST00000565284.5:ENST00000567842.5:ENST00000564337.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	32	2	2.23335	2.443015	2.65268	0.0634557	0.0201975	0.177047	0.121243
chr17	2164862	2164962	6703314	0	-	0.48	(0.476,0.515]	chr17	656271	699	INTRON	INTRON	SMG6	ENSG00000070366.14	ENST00000263073.11:ENST00000354901.8:ENST00000536871.6:ENST00000575454.1:ENST00000570874.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	32	2	2.23335	2.443015	2.65268	0.0634557	0.0201975	0.177047	0.121243
chr20	41064885	41064985	7273867	0	+	0.48	(0.476,0.515]	chr20	739222	30	INTRON	INTRON	TOP1	ENSG00000198900.7	ENST00000361337.3:ENST00000681113.1:ENST00000681058.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	32	2	2.23335	2.443015	2.65268	0.0634557	0.0201975	0.177047	0.121243
chr21	37223806	37223903	7461928	0	-	0.494845	(0.476,0.515]	chr21	760203	5	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	VPS26C	ENSG00000157538.14	ENST00000399000.7:ENST00000497493.1:ENST00000309117.11	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	32	2	2.23335	2.443015	2.65268	0.0634557	0.0201975	0.177047	0.121243
chr3	48968333	48968433	1421962	0	+	0.5	(0.476,0.515]	chr3	149525	1	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ARIH2	ENSG00000177479.20	ENST00000498314.5:ENST00000449376.5:ENST00000490095.5:ENST00000356401.9:ENST00000495761.5:ENST00000483333.5:ENST00000486316.5:ENST00000474936.6:ENST00000452385.5:ENST00000459976.2:ENST00000465217.1:ENST00000482342.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	32	2	2.23335	2.443015	2.65268	0.0634557	0.0201975	0.177047	0.121243
chr1	151256394	151256493	225428	0	+	0.373737	(0.35,0.378]	chr1	25737	12	INTRON	INTRON	PSMD4	ENSG00000159352.16	ENST00000368881.8:ENST00000368884.8:ENST00000461434.1:ENST00000462970.5:ENST00000476855.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	35	2	2.39939	2.44298	2.48657	0.0458078	0.032907	0.149888	0.145164
chr10	27176855	27176955	4413245	0	+	0.52	(0.515,0.57]	chr10	407021	32	INTRON	INTRON	MASTL	ENSG00000120539.15	ENST00000375946.8:ENST00000375940.9:ENST00000342386.10:ENST00000477034.2	protein_coding	protein_coding	protein_coding	protein_coding	4	45	2	1.63184	2.44298	3.25412	0.0545832	0.00224554	0.165292	0.0435144
chr12	69472026	69472126	5164269	0	+	0.37	(0.35,0.378]	chr12	489127	11	INTRON	INTRON	FRS2	ENSG00000166225.9	ENST00000547219.5:ENST00000550316.5:ENST00000547414.5:ENST00000548154.5:ENST00000549921.6:ENST00000550389.5:ENST00000550937.5:ENST00000549092.5:ENST00000550169.5	protein_coding	protein_coding	protein_coding	protein_coding	2	35	2	2.39939	2.44298	2.48657	0.0458078	0.032907	0.149888	0.145164
chr7	45018729	45018829	3316096	0	+	0.37	(0.35,0.378]	chr7	308173	180	INTRON	INTRON	CCM2	ENSG00000136280.17	ENST00000461377.5:ENST00000544363.5:ENST00000541586.5:ENST00000478582.5:ENST00000258781.11:ENST00000488727.5:ENST00000648329.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	35	2	2.39939	2.44298	2.48657	0.0458078	0.032907	0.149888	0.145164
chr7	107084588	107084688	3377566	0	+	0.37	(0.35,0.378]	chr7	316248	139	INTRON	INTRON	PRKAR2B	ENSG00000005249.13	ENST00000265717.5:ENST00000393613.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	35	2	2.39939	2.44298	2.48657	0.0458078	0.032907	0.149888	0.145164
chr16	67856433	67856532	6368516	0	+	0.494949	(0.476,0.515]	chr16	611903	85	INTRON	INTRON	NUTF2	ENSG00000102898.12	ENST00000568390.5:ENST00000219169.9:ENST00000567105.5:ENST00000568233.5:ENST00000569436.6:ENST00000568396.2:ENST00000570026.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	45	2	2.31726	2.44297	2.56868	0.0256676	0.015077	0.133676	0.0994339
chr16	11904634	11904734	6446298	0	-	0.33	(0.32,0.35]	chr16	621130	6	INTRON	INTRON	GSPT1	ENSG00000103342.13	ENST00000434724.7:ENST00000439887.6:ENST00000420576.6:ENST00000568849.5:ENST00000562169.1	protein_coding	protein_coding	protein_coding	protein_coding	9	138	2	1.95458	2.442955	2.93133	0.00548359	5.89873e-4	0.0671431	0.0225024
chr15	52050437	52050537	6029337	0	+	0.33	(0.32,0.35]	chr15	574446	3	SS5_PROX	SS5_PROX:INTRON	MAPK6	ENSG00000069956.14	ENST00000691380.1:ENST00000681888.1:ENST00000261845.7:ENST00000680066.1:ENST00000680777.1:ENST00000680652.1	protein_coding	protein_coding	protein_coding	protein_coding	3	50	2	2.19668	2.442945	2.68921	0.0230336	0.021398	0.123719	0.118056
chr7	26211361	26211461	3292465	0	+	0.33	(0.32,0.35]	chr7	305861	3	SS3_PROX	SS3_PROX:INTRON	CBX3	ENSG00000122565.19	ENST00000337620.8:ENST00000396386.7:ENST00000409747.5:ENST00000497498.1:ENST00000481057.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	50	2	2.19668	2.442945	2.68921	0.0230336	0.021398	0.123719	0.118056
chr10	6166808	6166908	4386213	0	+	0.4	(0.378,0.408]	chr10	404834	24	INTRON	INTRON	PFKFB3	ENSG00000170525.21	ENST00000379789.8:ENST00000536985.6:ENST00000639949.1	protein_coding	protein_coding	protein_coding	protein_coding	13	177	2	2.29867	2.442925	2.58718	5.3569e-4	4.26082e-4	0.0214409	0.0184573
chr19	8456074	8456173	7010875	0	+	0.393939	(0.378,0.408]	chr19	696143	1	INTRON	INTRON	HNRNPM	ENSG00000099783.12	ENST00000348943.7:ENST00000597813.5:ENST00000600092.5:ENST00000325495.9:ENST00000600806.5:ENST00000620401.4:ENST00000594907.5:ENST00000596984.5:ENST00000601645.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	74	2	1.73164	2.442895	3.15415	0.0441773	4.11608e-4	0.149888	0.0181365
chr2	202284981	202285080	985113	0	+	0.343434	(0.32,0.35]	chr2	105736	1	INTRON	INTRON	NOP58	ENSG00000055044.11	ENST00000264279.10:ENST00000492688.5:ENST00000478941.1:ENST00000433543.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	158	2	1.79174	2.442855	3.09397	0.0135719	5.01391e-5	0.0949306	0.00581045
chr7	77695990	77696086	3563505	0	-	0.5	(0.476,0.515]	chr7	332039	2	EXON_LNCRNA	EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	APTR	ENSG00000214293.10	ENST00000659053.1:ENST00000440088.5:ENST00000665948.1:ENST00000430801.6:ENST00000663454.1:ENST00000664660.1:ENST00000654794.2:ENST00000663654.2:ENST00000398043.3:ENST00000687850.1:ENST00000690779.1:ENST00000687769.1:ENST00000416650.5:ENST00000447009.1	lncRNA	lncRNA	lncRNA	lncRNA	7	72	2	1.59493	2.442835	3.29074	0.0213255	0.00272563	0.123504	0.0467523
chr4	896259	896359	2093922	0	-	0.49	(0.476,0.515]	chr4	206943	4	SS5_PROX	SS5_PROX:INTRON	GAK	ENSG00000178950.18	ENST00000314167.9:ENST00000511163.5:ENST00000505819.5:ENST00000507580.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	13	170	2	2.43212	2.442825	2.45353	9.04659e-4	1.88149e-4	0.0278365	0.011951
chr19	28724518	28724618	7168352	0	-	0.5	(0.476,0.515]	chr19	724254	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ENSG00000283403:ENSG00000283269	ENSG00000283403.1:ENSG00000283269.1	ENST00000592347.5:ENST00000636857.1:ENST00000586528.1	lncRNA	lncRNA	lncRNA:transcribed_unprocessed_pseudogene	lncRNA:processed_transcript:transcribed_unprocessed_pseudogene	5	59	2	1.63962	2.44279	3.24596	0.0346854	0.00322919	0.148144	0.0507087
chr2	99386918	99387018	835322	0	+	0.49	(0.476,0.515]	chr2	93732	36	INTRON	INTRON	EIF5B	ENSG00000158417.11	ENST00000617677.1:ENST00000289371.11	protein_coding	protein_coding	protein_coding	protein_coding	5	59	2	1.63962	2.44279	3.24596	0.0346854	0.00322919	0.148144	0.0507087
chr1	86999319	86999419	154442	0	+	0.51	(0.476,0.515]	chr1	16969	239	INTRON	INTRON	HS2ST1	ENSG00000153936.18	ENST00000370550.10:ENST00000370551.8:ENST00000687893.1:ENST00000693745.1:ENST00000689904.1:ENST00000690674.1:ENST00000591456.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	32	2	2.40608	2.442785	2.47949	0.0425709	0.0326974	0.148082	0.145164
chr1	89848956	89849056	159805	0	+	0.5	(0.476,0.515]	chr1	17285	19	INTRON	INTRON	LRRC8D	ENSG00000171492.14	ENST00000525774.5:ENST00000337338.9:ENST00000394593.7:ENST00000532201.5:ENST00000414841.1:ENST00000527156.1:ENST00000441269.2	protein_coding	protein_coding	protein_coding	protein_coding	2	32	2	2.40608	2.442785	2.47949	0.0425709	0.0326974	0.148082	0.145164
chr19	1055628	1055717	6993495	0	+	0.494382	(0.476,0.515]	chr19	692658	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ABCA7	ENSG00000064687.13	ENST00000433129.6:ENST00000263094.11:ENST00000435683.7:ENST00000530092.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	32	2	2.40608	2.442785	2.47949	0.0425709	0.0326974	0.148082	0.145164
chr4	87085745	87085844	1995312	0	+	0.494949	(0.476,0.515]	chr4	199063	12	INTRON	INTRON	AFF1	ENSG00000172493.23	ENST00000395146.9:ENST00000507468.5:ENST00000674009.1:ENST00000503477.5:ENST00000544085.6:ENST00000307808.10:ENST00000511722.5:ENST00000514970.2	protein_coding	protein_coding	protein_coding	protein_coding	2	32	2	2.40608	2.442785	2.47949	0.0425709	0.0326974	0.148082	0.145164
chr7	129639536	129639635	3412402	0	+	0.515152	(0.476,0.515]	chr7	319019	59	INTRON	INTRON	NRF1	ENSG00000106459.15	ENST00000393232.6:ENST00000454688.5:ENST00000223190.8:ENST00000311967.6:ENST00000393230.6:ENST00000353868.5	protein_coding	protein_coding	protein_coding	protein_coding	2	32	2	2.40608	2.442785	2.47949	0.0425709	0.0326974	0.148082	0.145164
chr1	234477572	234477672	661420	0	-	0.3	(0.28,0.32]	chr1	78262	44	INTRON	INTRON	TARBP1	ENSG00000059588.10	ENST00000040877.2	protein_coding	protein_coding	protein_coding	protein_coding	5	89	2	2.4387	2.44275	2.4468	0.0126802	0.0037095	0.0926667	0.0561833
chr18	26229475	26229575	6884514	0	+	0.4	(0.378,0.408]	chr18	682426	18	INTRON	INTRON	TAF4B	ENSG00000141384.13	ENST00000269142.10:ENST00000578121.5:ENST00000418698.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	62	2	1.5653	2.44273	3.32016	0.043739	0.00268328	0.162255	0.0464781
chr18	77982019	77982119	6990175	0	-	0.38	(0.378,0.408]	chr18	691895	1	SS5_PROX	SS5_PROX:INTRON	LINC01029	ENSG00000265843.3	ENST00000657337.1:ENST00000669341.1:ENST00000671271.1:ENST00000668585.1:ENST00000666771.1:ENST00000667842.1:ENST00000661306.1:ENST00000662598.1:ENST00000662109.1:ENST00000662085.1:ENST00000583106.1:ENST00000582805.1:ENST00000656930.1	lncRNA	lncRNA	lncRNA	lncRNA	5	62	2	1.5653	2.44273	3.32016	0.043739	0.00268328	0.162255	0.0464781
chr9	135954253	135954343	4372499	0	-	0.488889	(0.476,0.515]	chr9	402547	1	INTRON	INTRON	UBAC1	ENSG00000130560.9	ENST00000371756.4:ENST00000478485.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	19	250	2	2.3478	2.44268	2.53756	3.47471e-4	4.9892e-5	0.017378	0.00578948
chr12	56000718	56000808	5145138	0	+	0.311111	(0.28,0.32]	chr12	485968	8	INTRON	INTRON	SUOX	ENSG00000139531.13	ENST00000356124.8:ENST00000551698.5:ENST00000552363.5:ENST00000550121.5:ENST00000266971.8:ENST00000550340.5:ENST00000394115.6:ENST00000547586.5:ENST00000552258.5:ENST00000548274.5:ENST00000552813.5:ENST00000550478.5:ENST00000546833.5:ENST00000551841.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	89	2	2.28714	2.4426550000000002	2.59817	0.00753816	0.00696126	0.0754576	0.0748659
chr12	110403426	110403526	5409196	0	-	0.72	(0.57,1]	chr12	516465	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ANAPC7:ENSG00000258210	ENSG00000196510.14:ENSG00000258210.1	ENST00000455511.9:ENST00000450008.3:ENST00000552170.2:ENST00000550231.1:ENST00000464697.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay	5	38	2	1.89351	2.4424900000000003	2.99147	0.0255126	6.75142e-4	0.133676	0.0237705
chr2	61299669	61299766	1128808	0	-	0.453608	(0.44,0.476]	chr2	121346	24	INTRON	INTRON	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000472706.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	60	2	1.9039	2.44245	2.981	0.0501498	9.31193e-4	0.156383	0.0278746
chr1	46303920	46304020	96538	0	+	0.51	(0.476,0.515]	chr1	12963	1	SS5_PROX	SS5_PROX:INTRON	UQCRH	ENSG00000173660.12	ENST00000311672.10:ENST00000489056.5:ENST00000486951.1:ENST00000496387.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	88	2	2.0107	2.44238	2.87406	0.00572098	0.00188729	0.0681402	0.0391691
chr9	135934600	135934697	4372288	0	-	0.463918	(0.44,0.476]	chr9	402502	7	INTRON	INTRON	UBAC1	ENSG00000130560.9	ENST00000371756.4:ENST00000489050.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	96	2	2.29258	2.442215	2.59185	0.00279559	0.00200767	0.0488779	0.0408395
chr3	152345020	152345119	1535751	0	+	0.363636	(0.35,0.378]	chr3	160003	94	INTRON	INTRON	MBNL1	ENSG00000152601.18	ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000495875.6:ENST00000324210.10:ENST00000493459.5:ENST00000459747.1:ENST00000460591.5:ENST00000545754.5:ENST00000357472.7:ENST00000324196.9:ENST00000498502.5:ENST00000463374.5:ENST00000485910.5:ENST00000465907.6:ENST00000492948.5:ENST00000485509.5:ENST00000464596.5	protein_coding	protein_coding	protein_coding	protein_coding	7	97	2	1.91549	2.4422099999999998	2.96893	0.00887698	0.00149997	0.0849778	0.0351802
chr1	167963434	167963534	248757	0	+	0.49	(0.476,0.515]	chr1	29542	112	INTRON	INTRON	DCAF6	ENSG00000143164.16	ENST00000450548.5:ENST00000470919.5:ENST00000432587.6:ENST00000367843.7:ENST00000470721.5:ENST00000367840.4:ENST00000312263.10:ENST00000455334.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	78	2	1.55023	2.442195	3.33416	0.019797	0.00230489	0.120593	0.0428247
chr1	46273254	46273354	96477	0	+	0.44	(0.408,0.44]	chr1	12937	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RAD54L	ENSG00000085999.13	ENST00000442598.5:ENST00000671528.1:ENST00000371975.9:ENST00000655446.1:ENST00000476687.2:ENST00000664182.1:ENST00000661701.1:ENST00000488942.5:ENST00000459678.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	45	2	2.21857	2.44218	2.66579	0.0209591	0.019342	0.119831	0.112046
chr1	225879810	225879910	646206	0	-	0.44	(0.408,0.44]	chr1	76544	4	SS3_PROX	SS3_PROX:INTRON	TMEM63A	ENSG00000196187.12	ENST00000366835.8	protein_coding	protein_coding	protein_coding	protein_coding	3	45	2	2.21857	2.44218	2.66579	0.0209591	0.019342	0.119831	0.112046
chr4	468681	468781	2092866	0	-	0.44	(0.408,0.44]	chr4	206783	239	INTRON	INTRON	ABCA11P:ZNF721	ENSG00000251595.7:ENSG00000182903.16	ENST00000451020.6:ENST00000514396.5:ENST00000507854.1:ENST00000515578.5:ENST00000506646.5:ENST00000507078.1:ENST00000511833.3:ENST00000338977.5:ENST00000505900.1	protein_coding	protein_coding	protein_coding:transcribed_processed_pseudogene	protein_coding:nonsense_mediated_decay:processed_transcript	3	45	2	2.21857	2.44218	2.66579	0.0209591	0.019342	0.119831	0.112046
chr17	46167637	46167737	6784616	0	-	0.26	[0,0.28]	chr17	669232	104	INTRON	INTRON	KANSL1	ENSG00000120071.15	ENST00000574590.6:ENST00000572904.6:ENST00000432791.7:ENST00000575318.6:ENST00000638275.1:ENST00000262419.10:ENST00000648792.1:ENST00000639531.1:ENST00000639150.1:ENST00000639853.1:ENST00000571698.2:ENST00000639375.1:ENST00000638269.1:ENST00000576248.2:ENST00000639356.1:ENST00000574655.6:ENST00000639099.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	62	2	2.28885	2.442165	2.59548	0.0346067	0.0181093	0.136649	0.114853
chr7	123729819	123729919	3632469	0	-	0.25	[0,0.28]	chr7	337581	202	INTRON	INTRON	WASL	ENSG00000106299.8	ENST00000223023.5	protein_coding	protein_coding	protein_coding	protein_coding	3	62	2	2.28885	2.442165	2.59548	0.0346067	0.0181093	0.136649	0.114853
chr2	24816480	24816571	712326	0	+	0.351648	(0.35,0.378]	chr2	82378	9	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	CENPO	ENSG00000138092.11	ENST00000473706.5:ENST00000491031.5:ENST00000380834.7:ENST00000260662.2:ENST00000498362.1:ENST00000464156.5:ENST00000395845.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	108	2	2.0847	2.44212	2.79954	0.00719316	9.3505e-4	0.0756118	0.0280583
chr7	92121256	92121353	3568877	0	-	0.340206	(0.32,0.35]	chr7	332453	23	INTRON	INTRON	CYP51A1:ENSG00000289027	ENSG00000001630.18:ENSG00000289027.1	ENST00000691309.1:ENST00000003100.13:ENST00000692281.1:ENST00000693096.1:ENST00000450723.5:ENST00000422867.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	147	2	2.16099	2.441995	2.723	0.0127227	1.07419e-4	0.0926667	0.00878438
chr15	84987444	84987544	6088986	0	+	0.36	(0.35,0.378]	chr15	579504	47	INTRON	INTRON	PDE8A	ENSG00000073417.15	ENST00000310298.8:ENST00000557957.5:ENST00000394553.6:ENST00000339708.9:ENST00000478717.5:ENST00000485596.5:ENST00000559742.5:ENST00000559086.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	87	2	2.18494	2.44199	2.69904	0.0047516	0.00438476	0.0635784	0.0585064
chr20	5591336	5591435	7312145	0	-	0.292929	(0.28,0.32]	chr20	744600	47	INTRON	INTRON	GPCPD1	ENSG00000125772.14	ENST00000379019.7:ENST00000481690.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	56	2	2.32871	2.44196	2.55521	0.0581621	0.0067419	0.167723	0.0739405
chr3	5135471	5135571	1353707	0	+	0.55	(0.515,0.57]	chr3	142361	65	INTRON	INTRON	ARL8B	ENSG00000134108.14	ENST00000429403.5:ENST00000256496.8:ENST00000455168.5:ENST00000444332.1:ENST00000419534.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	51	2	1.79385	2.441935	3.09002	0.0201222	0.00491099	0.121243	0.0609494
chr4	80019276	80019376	2170006	0	-	0.55	(0.515,0.57]	chr4	213884	3	SS3_PROX	SS3_PROX:INTRON	ANTXR2	ENSG00000163297.18	ENST00000403729.7:ENST00000449651.5:ENST00000679571.1:ENST00000681710.1:ENST00000680913.1:ENST00000681115.1:ENST00000404191.5:ENST00000346652.10:ENST00000307333.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	76	2	2.12085	2.441925	2.763	0.00319489	0.00257143	0.0520636	0.045134
chr11	5471318	5471417	4897935	0	-	0.454545	(0.44,0.476]	chr11	459195	20	INTRON	INTRON	HBG2:ENSG00000239920:HBE1:OR51B5	ENSG00000196565.15:ENSG00000239920.2:ENSG00000213931.7:ENSG00000167355.8	ENST00000380252.6:ENST00000380259.7:ENST00000292896.3:ENST00000380237.5:ENST00000420726.6:ENST00000420465.6:ENST00000415970.6:ENST00000418729.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:nonsense_mediated_decay:processed_transcript	4	58	2	2.19078	2.441875	2.69297	0.0226089	0.00333494	0.117489	0.0528877
chr17	46167538	46167637	6784615	0	-	0.282828	(0.28,0.32]	chr17	669232	103	INTRON	INTRON	KANSL1	ENSG00000120071.15	ENST00000574590.6:ENST00000572904.6:ENST00000432791.7:ENST00000575318.6:ENST00000638275.1:ENST00000262419.10:ENST00000648792.1:ENST00000639531.1:ENST00000639150.1:ENST00000639853.1:ENST00000571698.2:ENST00000639375.1:ENST00000638269.1:ENST00000576248.2:ENST00000639356.1:ENST00000574655.6:ENST00000639099.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	104	2	2.40458	2.4418699999999998	2.47916	0.0141047	0.0015115	0.0959618	0.0360297
chr17	57996441	57996541	6799941	0	-	0.39	(0.378,0.408]	chr17	671423	17	INTRON	INTRON	ENSG00000266086	ENSG00000266086.3	ENST00000578794.2:ENST00000665125.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	25	341	2	2.41667	2.44183	2.46699	1.37855e-4	4.70076e-5	0.010707	0.00559481
chr5	72849092	72849187	2387449	0	+	0.473684	(0.44,0.476]	chr5	230365	2	INTRON	INTRON	TNPO1	ENSG00000083312.19	ENST00000680533.1:ENST00000515483.5:ENST00000520850.5:ENST00000337273.10:ENST00000680025.1:ENST00000523768.5:ENST00000681711.1:ENST00000518279.5:ENST00000679378.1:ENST00000513944.5:ENST00000506351.6:ENST00000506528.5:ENST00000511754.5:ENST00000509030.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	57	2	2.2193	2.441815	2.66433	0.0194358	0.00896114	0.119831	0.0800073
chr7	56075136	56075236	3319293	0	+	0.35	(0.32,0.35]	chr7	308566	4	SS5_PROX	SS5_PROX:INTRON	SUMF2	ENSG00000129103.19	ENST00000395436.7:ENST00000651354.1:ENST00000651586.1:ENST00000652303.1:ENST00000275607.13:ENST00000650735.1:ENST00000395435.7:ENST00000342190.11:ENST00000413952.7:ENST00000452216.5:ENST00000436782.5:ENST00000437307.6:ENST00000434526.8:ENST00000413756.5:ENST00000423763.5:ENST00000438133.5:ENST00000447501.5:ENST00000451338.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	50	2	2.13945	2.4417999999999997	2.74415	0.0254517	0.0198267	0.133676	0.109608
chr21	45474777	45474876	7420207	0	+	0.515152	(0.476,0.515]	chr21	756427	4	INTRON	INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1:ENST00000355480.10:ENST00000359759.8	protein_coding	protein_coding	protein_coding	protein_coding	6	80	2	1.91368	2.4417400000000002	2.9698	0.0135123	0.00124841	0.101363	0.0323336
chr1	89539247	89539347	157544	0	+	0.45	(0.44,0.476]	chr1	17165	119	INTRON	INTRON	LRRC8B	ENSG00000197147.15	ENST00000330947.7:ENST00000439853.6:ENST00000449440.5:ENST00000640258.1:ENST00000639264.1	protein_coding	protein_coding	protein_coding	protein_coding	4	58	2	2.38519	2.44171	2.49823	0.012193	0.00718224	0.0910127	0.0756118
chr17	77144547	77144645	6678671	0	+	0.295918	(0.28,0.32]	chr17	652347	5	INTRON	INTRON	SEC14L1	ENSG00000129657.16	ENST00000392476.6:ENST00000589827.5:ENST00000430767.8:ENST00000586429.5:ENST00000586390.5:ENST00000585618.5:ENST00000436233.9:ENST00000443798.8:ENST00000587820.1:ENST00000591786.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	55	2	1.96475	2.44163	2.91851	0.0428385	0.0130672	0.162255	0.093385
chr6	78960791	78960890	3140869	0	-	0.242424	[0,0.28]	chr6	292740	18	INTRON	INTRON	PHIP	ENSG00000146247.14	ENST00000275034.5:ENST00000479165.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	75	2	1.79953	2.441565	3.0836	0.0377477	0.00940284	0.156608	0.0817766
chr19	1427544	1427644	6995302	0	+	0.39	(0.378,0.408]	chr19	693206	13	EXON_MRNA	EXON_MRNA:INTRON	DAZAP1	ENSG00000071626.17	ENST00000336761.10:ENST00000233078.9:ENST00000592522.5:ENST00000586579.5:ENST00000587079.5:ENST00000592453.2:ENST00000589484.5:ENST00000585485.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	26	357	2	2.31053	2.4414949999999997	2.57246	2.38065e-4	1.95285e-5	0.0141752	0.00339939
chr3	172042820	172042920	1559575	0	+	0.47	(0.44,0.476]	chr3	161523	18	INTRON	INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000421757.5:ENST00000469491.5:ENST00000336824.8:ENST00000423424.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	116	2	2.18545	2.4414	2.69735	0.00161833	0.00125459	0.0369252	0.0323608
chr7	50314105	50314205	3316794	0	+	0.47	(0.44,0.476]	chr7	308247	48	INTRON	INTRON	IKZF1	ENSG00000185811.20	ENST00000642219.1:ENST00000645066.1:ENST00000484847.6:ENST00000646110.1:ENST00000331340.8:ENST00000413698.5:ENST00000349824.8:ENST00000343574.9:ENST00000357364.8:ENST00000440768.6:ENST00000346667.8:ENST00000615491.4:ENST00000359197.9:ENST00000439701.2:ENST00000438033.5:ENST00000492782.6:ENST00000462201.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	53	2	1.85904	2.44135	3.02366	0.029889	0.00603307	0.129138	0.0700813
chr9	114422813	114422913	4321131	0	-	0.45	(0.44,0.476]	chr9	397729	1	SS5_PROX	SS5_PROX:INTRON	WHRN	ENSG00000095397.16	ENST00000362057.4:ENST00000265134.10:ENST00000674048.1:ENST00000674036.8:ENST00000673811.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	53	2	1.85904	2.44135	3.02366	0.029889	0.00603307	0.129138	0.0700813
chr1	54047555	54047646	461537	0	-	0.362637	(0.35,0.378]	chr1	55612	3	UTR5	UTR5:EXON_MRNA:SS3_PROX:INTRON	TMEM59	ENSG00000116209.12	ENST00000234831.10:ENST00000371348.5:ENST00000371341.5:ENST00000440019.5:ENST00000420738.5:ENST00000452421.5:ENST00000371337.3	protein_coding	protein_coding	protein_coding	protein_coding	3	50	2	2.1617	2.4413150000000003	2.72093	0.0771502	0.00314173	0.196285	0.0514466
chr16	29608018	29608118	6471681	0	-	0.51	(0.476,0.515]	chr16	625301	132	INTRON	INTRON	ENSG00000288632	ENSG00000288632.1	ENST00000675579.1	lncRNA	lncRNA	lncRNA	lncRNA	9	116	2	2.26392	2.4413150000000003	2.61871	0.00174257	0.0010935	0.0375363	0.0302914
chr10	86492812	86492912	4659073	0	-	0.48	(0.476,0.515]	chr10	429282	185	INTRON	INTRON	WAPL	ENSG00000062650.20	ENST00000298767.10	protein_coding	protein_coding	protein_coding	protein_coding	4	52	2	1.69138	2.441285	3.19119	0.0481165	0.00325748	0.153019	0.0524329
chr8	100708253	100708348	4005443	0	-	0.505263	(0.476,0.515]	chr8	366588	9	INTRON	INTRON	PABPC1	ENSG00000070756.17	ENST00000677140.1:ENST00000677787.1:ENST00000678709.1:ENST00000676662.1:ENST00000677765.1:ENST00000677892.1:ENST00000522720.2:ENST00000520804.2:ENST00000521865.6:ENST00000677478.1:ENST00000677380.1:ENST00000520142.2:ENST00000677775.1:ENST00000678954.1:ENST00000676655.1:ENST00000676976.1:ENST00000678290.1:ENST00000318607.10:ENST00000679197.1:ENST00000519100.6:ENST00000519004.5:ENST00000522387.5:ENST00000523636.5:ENST00000522658.6:ENST00000678822.1:ENST00000523555.6:ENST00000610907.2:ENST00000517403.5:ENST00000519596.5:ENST00000518716.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	52	2	1.69138	2.441285	3.19119	0.0481165	0.00325748	0.153019	0.0524329
chr7	157222163	157222262	3454792	0	+	0.292929	(0.28,0.32]	chr7	322986	15	EXON_MRNA	EXON_MRNA:INTRON	UBE3C	ENSG00000009335.18	ENST00000348165.10:ENST00000470408.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	56	2	1.83771	2.44128	3.04485	0.0591725	0.00894006	0.189982	0.0799922
chr8	76982775	76982872	3977594	0	-	0.402062	(0.378,0.408]	chr8	364432	27	UTR3	UTR3:EXON_MRNA	PEX2	ENSG00000164751.15	ENST00000357039.9	protein_coding	protein_coding	protein_coding	protein_coding	7	92	2	2.04909	2.441265	2.83344	0.0048937	0.00244811	0.0641889	0.0445777
chr5	104268878	104268978	2443104	0	+	0.36	(0.35,0.378]	chr5	234410	1636	INTRON	INTRON	LINC02163	ENSG00000251026.2	ENST00000662211.1:ENST00000666145.1	lncRNA	lncRNA	lncRNA	lncRNA	8	117	2	2.14824	2.44122	2.7342	0.00327182	0.00125312	0.052643	0.0323608
chr22	50387389	50387489	7544631	0	+	0.44	(0.408,0.44]	chr22	771021	149	INTRON	INTRON	PPP6R2	ENSG00000100239.16	ENST00000359139.7:ENST00000395741.7:ENST00000612753.5:ENST00000395744.7:ENST00000216061.9	protein_coding	protein_coding	protein_coding	protein_coding	5	63	2	2.22819	2.441195	2.6542	0.0227514	0.00373083	0.117618	0.0561984
chr19	34432514	34432597	7053162	0	+	0.39759	(0.378,0.408]	chr19	703499	2	INTRON	INTRON	UBA2	ENSG00000126261.13	ENST00000607361.5:ENST00000586313.1:ENST00000590048.6:ENST00000246548.9:ENST00000439527.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	168	2	2.25339	2.441185	2.62898	0.00170463	1.44995e-4	0.0373845	0.0104754
chr7	23395373	23395473	3502910	0	-	0.3	(0.28,0.32]	chr7	326881	8	INTRON	INTRON	IGF2BP3	ENSG00000136231.14	ENST00000258729.8:ENST00000421467.6:ENST00000468263.5:ENST00000479504.5:ENST00000466809.6:ENST00000491719.5:ENST00000465058.5:ENST00000469723.5:ENST00000474105.5:ENST00000476938.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	55	2	1.96376	2.44104	2.91832	0.0480066	0.0102484	0.153019	0.089002
chr8	99057539	99057639	3811702	0	+	0.29	(0.28,0.32]	chr8	353071	11	INTRON	INTRON	VPS13B	ENSG00000132549.20	ENST00000496144.5:ENST00000683334.1:ENST00000682853.1:ENST00000357162.7:ENST00000358544.7:ENST00000683619.1:ENST00000441350.2:ENST00000684269.1:ENST00000682806.1:ENST00000683869.1:ENST00000682153.1:ENST00000682358.1:ENST00000682145.1:ENST00000355155.6:ENST00000682234.1:ENST00000683486.1:ENST00000684308.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	55	2	1.96376	2.44104	2.91832	0.0480066	0.0102484	0.153019	0.089002
chr6	53331151	53331251	3108011	0	-	0.51	(0.476,0.515]	chr6	291049	351	INTRON	INTRON	ELOVL5	ENSG00000012660.14	ENST00000370918.8:ENST00000542638.5:ENST00000304434.11:ENST00000485336.5:ENST00000465983.5:ENST00000486973.1:ENST00000370913.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	109	2	2.2344	2.441015	2.64763	0.00432475	4.86633e-4	0.0579331	0.0199652
chr6	37171891	37171991	2855269	0	+	0.34	(0.32,0.35]	chr6	269926	4	SS5_PROX	SS5_PROX:INTRON	PIM1	ENSG00000137193.14	ENST00000373509.6	protein_coding	protein_coding	protein_coding	protein_coding	10	136	2	2.12739	2.4410100000000003	2.75463	0.00387748	0.00130642	0.0543578	0.0333932
chr17	17833543	17833643	6737586	0	-	0.31	(0.28,0.32]	chr17	661170	96	INTRON	INTRON	SREBF1	ENSG00000072310.18	ENST00000261646.11:ENST00000395757.6:ENST00000355815.8	protein_coding	protein_coding	protein_coding	protein_coding	6	84	2	1.75863	2.440975	3.12332	0.0177071	0.00698537	0.11319	0.0718189
chr17	66404713	66404813	6663319	0	+	0.43	(0.408,0.44]	chr17	650326	405	INTRON	INTRON	PRKCA	ENSG00000154229.12	ENST00000413366.8:ENST00000578063.5:ENST00000284384.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	33	2	2.2957	2.44097	2.58624	0.0516458	0.0273686	0.176696	0.123904
chr3	179324549	179324649	1566769	0	+	0.41	(0.408,0.44]	chr3	162014	2	SS3_PROX	SS3_PROX:INTRON	ZNF639	ENSG00000121864.10	ENST00000496856.6:ENST00000491818.5:ENST00000481587.5:ENST00000326361.7	protein_coding	protein_coding	protein_coding	protein_coding	2	33	2	2.2957	2.44097	2.58624	0.0516458	0.0273686	0.176696	0.123904
chr3	183682939	183683037	1580273	0	+	0.571429	(0.57,1]	chr3	163015	38	UTR3	UTR3:EXON_MRNA	KLHL24	ENSG00000114796.16	ENST00000242810.11:ENST00000454652.6	protein_coding	protein_coding	protein_coding	protein_coding	32	212	2	2.38064	2.44084	2.50104	9.15642e-6	5.77632e-6	0.00217645	0.00179016
chr1	40211595	40211695	80471	0	+	0.41	(0.408,0.44]	chr1	10431	86	INTRON	INTRON	RLF	ENSG00000117000.9	ENST00000372771.5	protein_coding	protein_coding	protein_coding	protein_coding	5	60	2	1.92871	2.440835	2.95296	0.0127189	0.00929354	0.0986242	0.0817766
chr4	17816760	17816860	1927114	0	+	0.34	(0.32,0.35]	chr4	193728	1	SS3_PROX	SS3_PROX:INTRON	NCAPG	ENSG00000109805.10	ENST00000251496.7:ENST00000514176.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	94	2	1.67688	2.440835	3.20479	0.0361676	3.7902e-4	0.138959	0.0176313
chr10	101809783	101809883	4680888	0	-	0.53	(0.515,0.57]	chr10	432007	2	SS5_PROX	SS5_PROX:INTRON	OGA	ENSG00000198408.14	ENST00000439817.5:ENST00000361464.8:ENST00000357797.9:ENST00000370094.7:ENST00000429860.1	protein_coding	protein_coding	protein_coding	protein_coding	16	125	2	1.38469	2.44076	3.49683	0.0135089	6.73116e-5	0.101363	0.00723304
chr12	110399939	110400038	5409161	0	-	0.575758	(0.57,1]	chr12	516463	31	INTRON	INTRON	ANAPC7:ENSG00000258210	ENSG00000196510.14:ENSG00000258210.1	ENST00000455511.9:ENST00000450008.3:ENST00000552170.2:ENST00000550231.1:ENST00000464697.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay	6	45	2	1.52818	2.44073	3.35328	0.0508101	8.52328e-5	0.175989	0.00825602
chr1	212885995	212886095	310123	0	+	0.36	(0.35,0.378]	chr1	35816	2	INTRON	INTRON	FLVCR1	ENSG00000162769.13	ENST00000366971.9:ENST00000419102.1:ENST00000483790.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	47	2	2.34278	2.44067	2.53856	0.0326077	0.0129593	0.133687	0.0991015
chr11	3756997	3757096	4894757	0	-	0.575758	(0.57,1]	chr11	458876	32	INTRON	INTRON	NUP98	ENSG00000110713.17	ENST00000359171.8:ENST00000324932.12:ENST00000650171.1:ENST00000355260.7:ENST00000397004.8:ENST00000397007.8:ENST00000527104.5:ENST00000529379.1:ENST00000397013.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	15	102	2	2.36717	2.4406600000000003	2.51415	2.52506e-4	5.36785e-5	0.014715	0.00600032
chr7	92537035	92537133	3354597	0	+	0.397959	(0.378,0.408]	chr7	312666	2	UTR3	UTR3:EXON_MRNA	RBM48	ENSG00000127993.16	ENST00000481551.5:ENST00000265732.10	protein_coding	protein_coding	protein_coding	protein_coding	6	86	2	2.1782	2.4405900000000003	2.70298	0.00587071	0.00325723	0.0668474	0.0524329
chr17	82468341	82468419	6692362	0	+	0.448718	(0.44,0.476]	chr17	654562	2	SS3_PROX	SS3_PROX:INTRON	NARF	ENSG00000141562.19	ENST00000579198.5:ENST00000390006.8:ENST00000583181.5:ENST00000584192.5:ENST00000580296.5:ENST00000345415.11:ENST00000581202.5:ENST00000374611.9:ENST00000457415.7:ENST00000581795.5:ENST00000584411.5:ENST00000577812.5:ENST00000581743.5:ENST00000577432.5:ENST00000582907.5:ENST00000309794.16:ENST00000578082.5:ENST00000580748.1:ENST00000577410.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	31	404	2	2.41701	2.4405200000000002	2.46403	9.0566e-5	1.93012e-5	0.00847742	0.00337681
chr8	100928533	100928633	4005733	0	-	0.53	(0.515,0.57]	chr8	366658	31	INTRON	INTRON	YWHAZ	ENSG00000164924.18	ENST00000395958.6:ENST00000395957.6:ENST00000457309.2:ENST00000395956.7:ENST00000353245.7:ENST00000521309.5:ENST00000522542.5:ENST00000522819.5:ENST00000395953.6:ENST00000395948.6:ENST00000395951.7:ENST00000419477.6:ENST00000521607.5:ENST00000480304.5:ENST00000518736.5:ENST00000517727.5:ENST00000521328.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	76	2	1.64356	2.440455	3.23735	0.024299	2.1866e-4	0.12011	0.0129728
chr12	116063282	116063382	5423399	0	-	0.43	(0.408,0.44]	chr12	518245	403	INTRON	INTRON	MED13L	ENSG00000123066.9	ENST00000281928.9:ENST00000650226.1:ENST00000648737.1:ENST00000548743.2:ENST00000647567.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	68	2	1.9279	2.44043	2.95296	0.00929354	0.00807087	0.0817766	0.0806514
chr8	67123858	67123958	3777249	0	+	0.55	(0.515,0.57]	chr8	350363	3	INTRON	INTRON	CSPP1	ENSG00000104218.16	ENST00000676113.1:ENST00000675306.2:ENST00000678156.1:ENST00000262210.11:ENST00000678017.1:ENST00000675869.1:ENST00000678542.1:ENST00000677619.1:ENST00000676605.1:ENST00000676471.1:ENST00000677256.1:ENST00000676847.1:ENST00000677009.1:ENST00000675820.1:ENST00000676317.1:ENST00000677592.1:ENST00000676573.1:ENST00000678318.1:ENST00000677473.1:ENST00000674993.1:ENST00000678553.1:ENST00000679226.1:ENST00000676882.1:ENST00000675955.1:ENST00000678728.1:ENST00000677430.1:ENST00000677455.1:ENST00000678616.1:ENST00000678362.1:ENST00000679112.1:ENST00000678645.1:ENST00000676567.1:ENST00000677845.1:ENST00000519163.6:ENST00000676858.1:ENST00000678747.1:ENST00000519668.1:ENST00000676697.1:ENST00000678216.1:ENST00000677855.1:ENST00000676695.1:ENST00000677836.1:ENST00000677070.1:ENST00000678444.1:ENST00000676534.1:ENST00000678138.1:ENST00000678807.1:ENST00000677052.1:ENST00000679274.1:ENST00000679042.1:ENST00000678345.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	45	2	2.11724	2.44039	2.76354	0.0147344	0.0110335	0.0983813	0.0927187
chr7	92566561	92566659	3570677	0	-	0.561224	(0.515,0.57]	chr7	332714	1	INTRON	INTRON	FAM133B	ENSG00000234545.8	ENST00000445716.6:ENST00000438306.5:ENST00000415397.6:ENST00000481407.5:ENST00000427372.5:ENST00000494079.1:ENST00000468931.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	60	2	2.38476	2.44038	2.496	0.0110593	0.00225531	0.0873897	0.0436331
chr3	112541302	112541402	1770908	0	-	0.53	(0.515,0.57]	chr3	179235	1	SS5_PROX	SS5_PROX:INTRON	ATG3	ENSG00000144848.11	ENST00000283290.10:ENST00000402314.6:ENST00000495756.5:ENST00000496423.1:ENST00000492886.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	45	2	1.56681	2.440345	3.31388	0.064862	0.00174704	0.179394	0.0386026
chr12	57345979	57346079	5338407	0	-	0.5	(0.476,0.515]	chr12	510710	46	INTRON	INTRON	R3HDM2	ENSG00000179912.21	ENST00000402412.6:ENST00000347140.7:ENST00000634871.1:ENST00000448732.1	protein_coding	protein_coding	protein_coding	protein_coding	4	52	2	1.68092	2.440335	3.19975	0.0474026	0.00383299	0.169265	0.0542786
chr2	126674910	126675009	862197	0	+	0.373737	(0.35,0.378]	chr2	96613	163	INTRON	INTRON	GYPC	ENSG00000136732.16	ENST00000459787.1:ENST00000259254.9:ENST00000409836.3:ENST00000356887.12	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	47	2	2.04358	2.440335	2.83709	0.0329533	0.01435	0.145171	0.0966737
chr1	65049172	65049272	475381	0	-	0.47	(0.44,0.476]	chr1	57241	42	INTRON	INTRON	JAK1	ENSG00000162434.13	ENST00000672434.1:ENST00000671954.1:ENST00000673502.1:ENST00000672751.1:ENST00000672099.1	protein_coding	protein_coding	protein_coding	protein_coding	5	71	2	2.03266	2.44033	2.848	0.0155853	0.00215274	0.109411	0.0417866
chr1	28946154	28946254	59272	0	+	0.37	(0.35,0.378]	chr1	7621	310	INTRON	INTRON	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000647918.1:ENST00000646800.1:ENST00000644342.1:ENST00000646189.1:ENST00000482464.6:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000646260.1:ENST00000373798.5:ENST00000644600.1:ENST00000649674.1:ENST00000643173.1:ENST00000343067.9:ENST00000644780.1:ENST00000650265.1:ENST00000648181.1:ENST00000643604.1:ENST00000648891.1:ENST00000373797.2:ENST00000349460.9:ENST00000645184.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	80	2	1.25787	2.440295	3.62272	0.0708442	5.64719e-4	0.184617	0.021704
chr1	154222095	154222194	227539	0	+	0.383838	(0.378,0.408]	chr1	26230	3	INTRON	INTRON	UBAP2L	ENSG00000143569.19	ENST00000343815.10:ENST00000271877.11:ENST00000613315.4:ENST00000441890.5:ENST00000412596.5:ENST00000368504.5:ENST00000428931.6:ENST00000437652.5:ENST00000456325.5	protein_coding	protein_coding	protein_coding	protein_coding	13	155	2	1.72042	2.44027	3.16012	0.00537628	1.44288e-4	0.066464	0.0109794
chr22	49419987	49420086	7600275	0	-	0.474747	(0.44,0.476]	chr22	778546	27	INTRON	INTRON	MIR3667HG	ENSG00000188511.13	ENST00000414287.5:ENST00000498829.1	lncRNA	lncRNA	lncRNA	lncRNA	3	44	2	2.38219	2.44021	2.49823	0.045456	0.00718224	0.149888	0.0756118
chr1	25336852	25336939	403258	0	-	0.367816	(0.35,0.378]	chr1	48411	2	SS5_PROX	SS5_PROX:INTRON	RSRP1	ENSG00000117616.18	ENST00000473314.6:ENST00000561867.1:ENST00000568996.1:ENST00000568399.1:ENST00000562018.1:ENST00000567741.1:ENST00000566599.1:ENST00000564413.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	12	169	2	2.36506	2.440175	2.51529	0.00151148	3.18745e-4	0.0352794	0.0159645
chr16	2058973	2059073	6277012	0	+	0.47	(0.44,0.476]	chr16	600005	1	SS5_PROX	SS5_PROX:INTRON	TSC2	ENSG00000103197.18	ENST00000645591.1:ENST00000643946.1:ENST00000643088.1:ENST00000644665.1:ENST00000382538.10:ENST00000644135.1:ENST00000219476.9:ENST00000643745.1:ENST00000643149.1:ENST00000642936.1:ENST00000401874.7:ENST00000644335.1:ENST00000644222.1:ENST00000646388.1:ENST00000643298.1:ENST00000439673.6:ENST00000350773.9:ENST00000439117.6:ENST00000644329.1:ENST00000642812.1:ENST00000642797.1:ENST00000644043.1:ENST00000642561.1:ENST00000568454.6:ENST00000644399.1:ENST00000647234.1:ENST00000647242.1:ENST00000646823.1:ENST00000467949.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	43	2	2.0776	2.440175	2.80275	0.0292951	0.0146513	0.141862	0.0982604
chr17	82561069	82561168	6693020	0	+	0.444444	(0.44,0.476]	chr17	654633	12	INTRON	INTRON	FOXK2	ENSG00000141568.21	ENST00000473637.6:ENST00000335255.10:ENST00000527313.6:ENST00000570585.1:ENST00000531030.5:ENST00000526383.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	43	2	2.0776	2.440175	2.80275	0.0292951	0.0146513	0.141862	0.0982604
chr19	45119116	45119216	7079298	0	+	0.47	(0.44,0.476]	chr19	708078	103	INTRON	INTRON	PPP1R37	ENSG00000104866.11	ENST00000544069.2:ENST00000221462.9:ENST00000544897.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	43	2	2.0776	2.440175	2.80275	0.0292951	0.0146513	0.141862	0.0982604
chr9	131423901	131424000	4217268	0	+	0.454545	(0.44,0.476]	chr9	386720	293	INTRON	INTRON	PRRC2B	ENSG00000288701.1	ENST00000682525.1:ENST00000684596.1:ENST00000683519.1:ENST00000682501.1	protein_coding	protein_coding	protein_coding	protein_coding	3	43	2	2.0776	2.440175	2.80275	0.0292951	0.0146513	0.141862	0.0982604
chr12	42196142	42196241	5313185	0	-	0.515152	(0.476,0.515]	chr12	505317	236	INTRON	INTRON	YAF2	ENSG00000015153.15	ENST00000534854.7:ENST00000327791.8:ENST00000380790.4:ENST00000552109.5:ENST00000547622.5:ENST00000547351.5:ENST00000551268.5:ENST00000551528.5:ENST00000548661.5:ENST00000546726.5:ENST00000546972.5:ENST00000547724.1:ENST00000552928.5:ENST00000548917.1:ENST00000547254.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	43	2	2.32001	2.44017	2.56033	0.0287634	0.0136217	0.127066	0.101682
chr4	39713961	39714061	1953150	0	+	0.51	(0.476,0.515]	chr4	195630	152	INTRON	INTRON	UBE2K	ENSG00000078140.14	ENST00000510934.5:ENST00000261427.10:ENST00000438068.6:ENST00000513231.5:ENST00000503368.5:ENST00000445950.2:ENST00000510719.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	43	2	2.32001	2.44017	2.56033	0.0287634	0.0136217	0.127066	0.101682
chr20	32785817	32785909	7256892	0	+	0.23913	[0,0.28]	chr20	737138	6	INTRON	INTRON	DNMT3B	ENSG00000088305.19	ENST00000696232.1:ENST00000328111.6:ENST00000696231.1:ENST00000348286.6:ENST00000353855.6:ENST00000696233.1:ENST00000443239.7:ENST00000696234.1:ENST00000696235.1:ENST00000456297.6:ENST00000696236.1:ENST00000696237.1:ENST00000201963.3:ENST00000696238.1:ENST00000696239.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	117	2	2.30979	2.44014	2.57049	0.00973452	0.00378148	0.0832222	0.0562562
chr4	70936925	70937025	1970851	0	+	0.52	(0.515,0.57]	chr4	197571	340	INTRON	INTRON	MOB1B	ENSG00000173542.9	ENST00000502869.5:ENST00000509041.5:ENST00000309395.7:ENST00000396051.2:ENST00000511449.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	46	2	2.27116	2.440075	2.60899	0.0232669	0.00601759	0.118148	0.0700813
chr16	89782758	89782858	6544461	0	-	0.51	(0.476,0.515]	chr16	634531	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	FANCA	ENSG00000187741.16	ENST00000561667.2:ENST00000389301.8:ENST00000568369.6:ENST00000564475.6:ENST00000696275.1:ENST00000696287.1:ENST00000696286.1:ENST00000696274.1:ENST00000696291.1:ENST00000696276.1:ENST00000567205.2:ENST00000567284.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	70	2	2.24612	2.4400399999999998	2.63396	0.00799949	0.00426634	0.0766625	0.0596808
chr10	68728276	68728376	4442336	0	+	0.25	[0,0.28]	chr10	409595	53	INTRON	INTRON	CCAR1	ENSG00000060339.14	ENST00000536391.5:ENST00000630771.2:ENST00000538031.5:ENST00000543719.5:ENST00000541012.5:ENST00000265872.11:ENST00000539539.5:ENST00000543229.5:ENST00000536012.5:ENST00000543225.5:ENST00000494903.2:ENST00000540210.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	46	2	2.43761	2.440015	2.44242	0.0491024	0.0423864	0.161744	0.155269
chr20	49136231	49136331	7351851	0	-	0.56	(0.515,0.57]	chr20	749651	3	SS3_PROX	SS3_PROX:INTRON	STAU1	ENSG00000124214.21	ENST00000371856.7:ENST00000371828.7:ENST00000340954.11:ENST00000347458.9:ENST00000360426.8:ENST00000371792.5:ENST00000371802.5:ENST00000437404.2	protein_coding	protein_coding	protein_coding	protein_coding	4	45	2	1.67758	2.43999	3.2024	0.0471728	0.00322022	0.168737	0.0507087
chr1	42661304	42661404	83777	0	+	0.41	(0.408,0.44]	chr1	10975	4	SS5_PROX	SS5_PROX:INTRON	PPIH	ENSG00000171960.12	ENST00000372550.6:ENST00000678038.1:ENST00000677900.1:ENST00000676675.1:ENST00000304979.8:ENST00000678193.1:ENST00000678803.1:ENST00000678333.1:ENST00000677926.1:ENST00000677307.1:ENST00000440068.6:ENST00000677356.1:ENST00000679245.1:ENST00000678308.1:ENST00000678076.1:ENST00000677312.1:ENST00000677219.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	44	2	2.05947	2.439945	2.82042	0.0333232	0.0120121	0.134145	0.0962115
chr1	45598314	45598412	93345	0	+	0.479592	(0.476,0.515]	chr1	12579	32	INTRON	INTRON	NASP	ENSG00000132780.17	ENST00000437901.6:ENST00000537798.5:ENST00000437362.6:ENST00000350030.8:ENST00000464190.6:ENST00000527359.5:ENST00000528084.5:ENST00000453748.5:ENST00000525515.5:ENST00000527470.5:ENST00000529333.5:ENST00000531532.5:ENST00000530840.5:ENST00000528238.5:ENST00000534101.1:ENST00000470768.5:ENST00000372052.8:ENST00000351223.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	43	2	1.99341	2.4398549999999997	2.8863	0.037389	0.0111679	0.155878	0.0877435
chr4	119423965	119424064	2230394	0	-	0.373737	(0.35,0.378]	chr4	218488	10	INTRON	INTRON	GTF2IP12	ENSG00000283050.3	ENST00000651444.1:ENST00000634317.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	5	65	2	1.54563	2.4398299999999997	3.33403	0.046845	0.00272701	0.167716	0.0467523
chr17	27117209	27117309	6579997	0	+	0.38	(0.378,0.408]	chr17	639586	204	INTRON	INTRON	ENSG00000285822	ENSG00000285822.1	ENST00000649401.1	lncRNA	lncRNA	lncRNA	lncRNA	8	114	2	2.25517	2.4397900000000003	2.62441	0.00430492	5.61983e-4	0.0577899	0.0216479
chr9	37236307	37236407	4118820	0	+	0.28	[0,0.28]	chr9	375389	494	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000461038.5:ENST00000488607.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	63	2	2.02265	2.439775	2.8569	0.0449017	0.013822	0.149888	0.10247
chr8	37868933	37869032	3935633	0	-	0.515152	(0.476,0.515]	chr8	360553	55	INTRON	INTRON	RAB11FIP1	ENSG00000156675.16	ENST00000330843.9:ENST00000287263.8:ENST00000522727.5:ENST00000523182.5:ENST00000522774.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	79	2	2.14389	2.439765	2.73564	0.00540862	0.00333144	0.066545000000000007	0.0512081
chr3	12648741	12648827	1617278	0	-	0.372093	(0.35,0.378]	chr3	166993	3	UTR5	UTR5:EXON_MRNA:INTRON	RAF1	ENSG00000132155.14	ENST00000688543.1:ENST00000685348.1:ENST00000251849.9:ENST00000442415.7:ENST00000688444.1:ENST00000692093.1:ENST00000691724.1:ENST00000423275.6:ENST00000687326.1:ENST00000688803.1:ENST00000689876.1:ENST00000686455.1:ENST00000684903.1:ENST00000693312.1:ENST00000690460.1:ENST00000692773.1:ENST00000688625.1:ENST00000693664.1:ENST00000686762.1:ENST00000692311.1:ENST00000692558.1:ENST00000691779.1:ENST00000685738.1:ENST00000690397.1:ENST00000687923.1:ENST00000688269.1:ENST00000693705.1:ENST00000689097.1:ENST00000691899.1:ENST00000689914.1:ENST00000690625.1:ENST00000689389.1:ENST00000687257.1:ENST00000686409.1:ENST00000685653.1:ENST00000689540.1:ENST00000691396.1:ENST00000685437.1:ENST00000689418.1:ENST00000687940.1:ENST00000689481.1:ENST00000491290.2:ENST00000686479.1:ENST00000689033.1:ENST00000692777.1:ENST00000689226.1:ENST00000691718.1:ENST00000692959.1:ENST00000685740.1:ENST00000688753.1:ENST00000688779.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	90	2	1.2369	2.4397100000000003	3.64252	0.0511272	8.02255e-4	0.176696	0.0262199
chr21	10332815	10332915	7427348	0	-	0.33	(0.32,0.35]	chr21	757671	34	INTRON	INTRON	ENSG00000277693	ENSG00000277693.2	ENST00000622592.1:ENST00000616952.1	lncRNA	lncRNA	lncRNA	lncRNA	5	69	2	1.63843	2.4396500000000003	3.24087	0.0360919	0.00420518	0.152563	0.0572185
chr10	35524768	35524867	4426396	0	+	0.383838	(0.378,0.408]	chr10	407937	78	INTRON	INTRON	CCNY	ENSG00000108100.18	ENST00000374706.5:ENST00000493157.6:ENST00000374704.8:ENST00000265375.13:ENST00000339497.7:ENST00000492478.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	45	2	1.88729	2.439495	2.9917	0.0532327	0.0068789	0.162538	0.0749442
chr19	49106229	49106328	7088593	0	+	0.383838	(0.378,0.408]	chr19	709569	11	INTRON	INTRON	SNRNP70	ENSG00000104852.15	ENST00000601065.5:ENST00000598441.6:ENST00000401730.5:ENST00000221448.9:ENST00000595231.5:ENST00000544278.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	45	2	1.88729	2.439495	2.9917	0.0532327	0.0068789	0.162538	0.0749442
chr10	42352799	42352897	4603302	0	-	0.459184	(0.44,0.476]	chr10	424079	1	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	ENSG00000215146	ENSG00000215146.5	ENST00000609841.1:ENST00000650175.1:ENST00000423987.2:ENST00000609034.1:ENST00000609502.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	3	44	2	1.85146	2.439485	3.02751	0.0545846	0.00715968	0.182529	0.0723634
chr20	62936995	62937095	7362561	0	-	0.46	(0.44,0.476]	chr20	751216	78	INTRON	INTRON	DIDO1	ENSG00000101191.17	ENST00000266070.8:ENST00000370371.8	protein_coding	protein_coding	protein_coding	protein_coding	3	44	2	1.85146	2.439485	3.02751	0.0545846	0.00715968	0.182529	0.0723634
chr10	21549722	21549822	4404564	0	+	0.49	(0.476,0.515]	chr10	406427	80	INTRON	INTRON	MLLT10	ENSG00000078403.17	ENST00000651097.1:ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000377100.8:ENST00000377091.7:ENST00000650772.1:ENST00000651298.1:ENST00000652497.1:ENST00000495130.5:ENST00000377059.7:ENST00000621220.4:ENST00000476557.5:ENST00000462999.5:ENST00000430455.2:ENST00000479634.1:ENST00000480415.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	96	2	1.94021	2.4394	2.93859	0.00523626	0.00143107	0.0656295	0.0340925
chr16	89807993	89808093	6544735	0	-	0.46	(0.44,0.476]	chr16	634598	3	SS5_PROX	SS5_PROX:INTRON	FANCA	ENSG00000187741.16	ENST00000561667.2:ENST00000389301.8:ENST00000568369.6:ENST00000564475.6:ENST00000696275.1:ENST00000696287.1:ENST00000696286.1:ENST00000696274.1:ENST00000696291.1:ENST00000696276.1:ENST00000567205.2:ENST00000567284.7:ENST00000696277.1:ENST00000696292.1:ENST00000563767.2:ENST00000567621.6:ENST00000696288.1:ENST00000696293.1:ENST00000566889.5:ENST00000389302.7:ENST00000696294.1:ENST00000696295.1:ENST00000563673.5:ENST00000543736.5:ENST00000534992.5:ENST00000565582.5:ENST00000696296.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	32	2	2.29842	2.439375	2.58033	0.0552483	0.0247511	0.165463	0.131869
chr3	101676056	101676153	1758870	0	-	0.474227	(0.44,0.476]	chr3	178415	9	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	ZBTB11	ENSG00000066422.6	ENST00000312938.5:ENST00000689142.1:ENST00000690624.1:ENST00000688910.1:ENST00000690651.1:ENST00000461821.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	32	2	2.29842	2.439375	2.58033	0.0552483	0.0247511	0.165463	0.131869
chr6	37874687	37874787	2857582	0	+	0.45	(0.44,0.476]	chr6	270225	543	INTRON	INTRON	ZFAND3	ENSG00000156639.12	ENST00000287218.9:ENST00000373391.6:ENST00000474522.5	protein_coding	protein_coding	protein_coding	protein_coding	2	32	2	2.29842	2.439375	2.58033	0.0552483	0.0247511	0.165463	0.131869
chr19	28724718	28724818	7168354	0	-	0.35	(0.32,0.35]	chr19	724255	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ENSG00000283403:ENSG00000283269	ENSG00000283403.1:ENSG00000283269.1	ENST00000592347.5:ENST00000636857.1:ENST00000586528.1	lncRNA	lncRNA	lncRNA:transcribed_unprocessed_pseudogene	lncRNA:processed_transcript:transcribed_unprocessed_pseudogene	8	131	2	2.35389	2.43928	2.52467	0.00241005	0.00164175	0.0453511	0.0369207
chr17	78155081	78155181	6681769	0	+	0.44	(0.408,0.44]	chr17	652640	78	INTRON	INTRON	C17orf99	ENSG00000187997.12	ENST00000340363.10:ENST00000586999.2:ENST00000591995.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	84	2	1.70409	2.43926	3.17443	0.028108	5.19132e-4	0.137011	0.0209322
chr12	116223640	116223740	5425008	0	-	0.4	(0.378,0.408]	chr12	518271	425	INTRON	INTRON	MED13L	ENSG00000123066.9	ENST00000281928.9:ENST00000650226.1:ENST00000548743.2:ENST00000647567.1:ENST00000551197.2	protein_coding	protein_coding	protein_coding	protein_coding	7	100	2	2.30499	2.4392500000000004	2.57351	0.00683258	7.32287e-4	0.0713163	0.0246502
chr7	139369092	139369192	3437680	0	+	0.31	(0.28,0.32]	chr7	320318	84	INTRON	INTRON	LUC7L2:FMC1-LUC7L2	ENSG00000146963.18:ENSG00000269955.2	ENST00000541170.7:ENST00000541515.3:ENST00000608368.5:ENST00000619796.4:ENST00000354926.9:ENST00000435096.1:ENST00000456182.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	20	277	2	1.81074	2.439245	3.06775	0.00215885	1.63418e-4	0.0433146	0.0116917
chr5	173034515	173034608	2548679	0	+	0.44086	(0.44,0.476]	chr5	243308	2	UTR3	UTR3:EXON_MRNA	ATP6V0E1	ENSG00000113732.9	ENST00000519374.6:ENST00000519911.5:ENST00000265093.4	protein_coding	protein_coding	protein_coding	protein_coding	5	59	2	1.75023	2.43911	3.12799	0.0240995	0.0050635	0.129929	0.0621733
chr7	152422233	152422333	3681156	0	-	0.44	(0.408,0.44]	chr7	341660	632	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000682301.1:ENST00000452749.2:ENST00000680867.1:ENST00000683800.1:ENST00000684278.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	117	2	2.03695	2.439025	2.8411	0.00333392	6.58235e-4	0.0528877	0.0234118
chr1	145995763	145995839	541114	0	-	0.447368	(0.44,0.476]	chr1	63487	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TXNIP	ENSG00000265972.6	ENST00000582401.6	protein_coding	protein_coding	protein_coding	protein_coding	14	113	2	1.48482	2.43902	3.39322	0.0103782	0.00187283	0.0898677	0.0390476
chr21	10416308	10416408	7368157	0	+	0.26	[0,0.28]	chr21	751975	10	INTRON	INTRON	BAGE2	ENSG00000187172.15	ENST00000474011.5:ENST00000470054.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	5	102	2	2.02891	2.438755	2.8486	0.0236076	0.00254189	0.118716	0.0465056
chr12	64406032	64406130	5152895	0	+	0.469388	(0.44,0.476]	chr12	487721	3	INTRON	INTRON	XPOT	ENSG00000184575.12	ENST00000332707.10:ENST00000540203.5	protein_coding	protein_coding	protein_coding	protein_coding	18	225	2	2.10271	2.438725	2.77474	4.70215e-4	9.90844e-5	0.0196294	0.00901267
chr1	206644306	206644405	301731	0	+	0.545455	(0.515,0.57]	chr1	34677	49	INTRON	INTRON	DYRK3	ENSG00000143479.18	ENST00000367109.8:ENST00000367108.7:ENST00000489878.1:ENST00000649163.1:ENST00000441486.5:ENST00000367106.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	28	2	2.12971	2.438715	2.74772	0.0757903	0.0142192	0.194427	0.103638
chr19	4385767	4385867	7119980	0	-	0.55	(0.515,0.57]	chr19	716283	56	INTRON	INTRON	SH3GL1	ENSG00000141985.9	ENST00000269886.7:ENST00000598564.5:ENST00000417295.6:ENST00000593591.5:ENST00000598219.1	protein_coding	protein_coding	protein_coding	protein_coding	2	28	2	2.12971	2.438715	2.74772	0.0757903	0.0142192	0.194427	0.103638
chr2	208313693	208313793	992488	0	+	0.52	(0.515,0.57]	chr2	106664	10	INTRON	INTRON	PIKFYVE	ENSG00000115020.17	ENST00000264380.9:ENST00000443896.5:ENST00000452564.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	28	2	2.12971	2.438715	2.74772	0.0757903	0.0142192	0.194427	0.103638
chr4	32033699	32033799	1941785	0	+	0.54	(0.515,0.57]	chr4	194727	355	INTRON	INTRON	LINC02506	ENSG00000251129.3	ENST00000662669.1:ENST00000665582.2:ENST00000667252.2:ENST00000660373.2:ENST00000684849.1:ENST00000513211.2:ENST00000659613.1:ENST00000657576.1:ENST00000686730.1:ENST00000685407.1:ENST00000685455.1:ENST00000655951.1	lncRNA	lncRNA	lncRNA	lncRNA	2	28	2	2.12971	2.438715	2.74772	0.0757903	0.0142192	0.194427	0.103638
chr5	109053697	109053797	2447573	0	+	0.54	(0.515,0.57]	chr5	234551	61	INTRON	INTRON	FER	ENSG00000151422.14	ENST00000281092.9:ENST00000504143.6:ENST00000438717.6:ENST00000618353.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	28	2	2.12971	2.438715	2.74772	0.0757903	0.0142192	0.194427	0.103638
chr17	60315615	60315715	6805109	0	-	0.34	(0.32,0.35]	chr17	672360	105	INTRON	INTRON	USP32	ENSG00000170832.13	ENST00000300896.9:ENST00000590133.5:ENST00000589335.5:ENST00000393003.7:ENST00000588898.1:ENST00000589761.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	50	2	2.30476	2.438695	2.57263	0.0312297	0.0151817	0.13151	0.108535
chr19	21157471	21157571	7040112	0	+	0.35	(0.32,0.35]	chr19	701931	59	INTRON	INTRON	ZNF431	ENSG00000196705.8	ENST00000600692.5:ENST00000599296.5:ENST00000594425.5:ENST00000311048.11:ENST00000598331.1	protein_coding	protein_coding	protein_coding	protein_coding	3	50	2	2.30476	2.438695	2.57263	0.0312297	0.0151817	0.13151	0.108535
chr3	101669514	101669614	1758801	0	-	0.35	(0.32,0.35]	chr3	178402	30	INTRON	INTRON	ZBTB11	ENSG00000066422.6	ENST00000312938.5:ENST00000689142.1:ENST00000690624.1:ENST00000688910.1:ENST00000690651.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	50	2	2.30476	2.438695	2.57263	0.0312297	0.0151817	0.13151	0.108535
chr15	82416273	82416371	6076152	0	+	0.326531	(0.32,0.35]	chr15	578772	2	INTRON	INTRON	UBE2Q2P2	ENSG00000259429.5	ENST00000613592.4:ENST00000558542.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	3	51	2	2.37794	2.438615	2.49929	0.0498601	0.00776612	0.156383	0.0787356
chr12	79902906	79903006	5376212	0	-	0.4	(0.378,0.408]	chr12	512793	296	INTRON	INTRON	PPP1R12A	ENSG00000058272.19	ENST00000261207.9:ENST00000450142.7:ENST00000437004.6:ENST00000546369.5:ENST00000550107.5:ENST00000547330.5:ENST00000550510.5	protein_coding	protein_coding	protein_coding	protein_coding	7	92	2	1.92269	2.43854	2.95439	0.00836891	0.00148165	0.0822143	0.0349546
chr2	61493239	61493333	1130751	0	-	0.329787	(0.32,0.35]	chr2	121561	3	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	XPO1	ENSG00000082898.19	ENST00000677110.1:ENST00000678113.1:ENST00000676553.1:ENST00000677556.1:ENST00000677814.1:ENST00000676771.1:ENST00000677803.1:ENST00000677239.1:ENST00000678790.1:ENST00000677928.1:ENST00000678182.1:ENST00000677150.1:ENST00000678172.1:ENST00000678360.1:ENST00000678081.1:ENST00000676889.1:ENST00000676783.1:ENST00000679035.1:ENST00000677422.1:ENST00000677417.1:ENST00000677813.1:ENST00000676999.1:ENST00000676667.1:ENST00000678263.1:ENST00000678877.1:ENST00000677933.1:ENST00000680228.1:ENST00000677289.1:ENST00000677190.1:ENST00000481073.6:ENST00000677476.1:ENST00000469337.2:ENST00000401558.7:ENST00000428210.5:ENST00000677290.1:ENST00000677850.1:ENST00000676778.1:ENST00000451765.6:ENST00000676789.1:ENST00000678741.1:ENST00000404992.6:ENST00000406957.5:ENST00000677157.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	175	2	1.91001	2.438535	2.96706	0.00246425	5.0005e-4	0.0459102	0.0206993
chr4	82888603	82888702	2180084	0	-	0.535354	(0.515,0.57]	chr4	214408	63	INTRON	INTRON	SEC31A	ENSG00000138674.17	ENST00000395310.7:ENST00000513858.5:ENST00000348405.8:ENST00000448323.5:ENST00000311785.11:ENST00000509142.5:ENST00000443462.6:ENST00000355196.6:ENST00000508502.5:ENST00000505984.5:ENST00000508479.5:ENST00000436790.6:ENST00000503058.5:ENST00000507816.5:ENST00000514326.5:ENST00000513323.5:ENST00000511975.5:ENST00000507340.5:ENST00000507867.5:ENST00000506497.5:ENST00000510310.1:ENST00000503210.5:ENST00000505434.5:ENST00000507676.5:ENST00000506495.5:ENST00000507051.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	16	158	2	1.76022	2.438535	3.11685	0.0027225	3.41795e-5	0.0481753	0.00493498
chr1	205630534	205630634	623492	0	-	0.34	(0.32,0.35]	chr1	74156	50	INTRON	INTRON	ELK4	ENSG00000158711.14	ENST00000616704.4:ENST00000357992.9:ENST00000289703.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	50	2	2.07985	2.43846	2.79707	0.0303092	0.0170923	0.143025	0.104099
chr3	43514421	43514521	1674358	0	-	0.35	(0.32,0.35]	chr3	170972	813	INTRON	INTRON	ANO10	ENSG00000160746.13	ENST00000292246.8:ENST00000350459.8:ENST00000396091.7:ENST00000414522.6:ENST00000451430.6:ENST00000448045.1	protein_coding	protein_coding	protein_coding	protein_coding	3	50	2	2.07985	2.43846	2.79707	0.0303092	0.0170923	0.143025	0.104099
chr4	82865284	82865377	2179831	0	-	0.344086	(0.32,0.35]	chr4	214343	3	INTRON	INTRON	SEC31A	ENSG00000138674.17	ENST00000395310.7:ENST00000513858.5:ENST00000348405.8:ENST00000448323.5:ENST00000311785.11:ENST00000509142.5:ENST00000443462.6:ENST00000500777.6:ENST00000505472.5:ENST00000355196.6:ENST00000508502.5:ENST00000264405.9:ENST00000505984.5:ENST00000508479.5:ENST00000507828.5:ENST00000436790.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	50	2	2.07985	2.43846	2.79707	0.0303092	0.0170923	0.143025	0.104099
chr1	8763429	8763529	373242	0	-	0.49	(0.476,0.515]	chr1	43549	97	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000656437.1:ENST00000659924.1	protein_coding	protein_coding	protein_coding	protein_coding	3	43	2	1.86492	2.4384449999999998	3.01197	0.0550347	0.00633162	0.165463	0.0722266
chr12	116110199	116110259	5423870	0	-	0.5	(0.476,0.515]	chr12	518254	1	CDS	CDS:EXON_MRNA:INTRON	MED13L	ENSG00000123066.9	ENST00000281928.9:ENST00000650226.1:ENST00000548743.2:ENST00000647567.1:ENST00000551197.2	protein_coding	protein_coding	protein_coding	protein_coding	3	43	2	1.86492	2.4384449999999998	3.01197	0.0550347	0.00633162	0.165463	0.0722266
chr1	154259447	154259530	227938	0	+	0.433735	(0.408,0.44]	chr1	26338	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	UBAP2L	ENSG00000143569.19	ENST00000343815.10:ENST00000271877.11:ENST00000613315.4:ENST00000428931.6:ENST00000361546.6:ENST00000495676.5:ENST00000433615.5:ENST00000428595.1:ENST00000465855.5:ENST00000484696.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	53	2	2.22268	2.43844	2.6542	0.0227514	0.00770925	0.117618	0.0784002
chr10	74007752	74007852	4454597	0	+	0.46	(0.44,0.476]	chr10	411385	90	INTRON	INTRON	VCL	ENSG00000035403.18	ENST00000623461.3:ENST00000372755.7:ENST00000624354.3:ENST00000211998.10:ENST00000478896.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	10	135	2	2.24345	2.4384300000000003	2.63341	0.00250928	2.47449e-4	0.0446195	0.013927
chr11	63684375	63684475	4799942	0	+	0.53	(0.515,0.57]	chr11	444936	22	INTRON	INTRON	RTN3	ENSG00000133318.14	ENST00000341307.6:ENST00000356000.7:ENST00000542238.5:ENST00000538995.1:ENST00000339997.8:ENST00000540798.5:ENST00000537981.5:ENST00000377819.10:ENST00000536011.5:ENST00000543123.1:ENST00000543552.5:ENST00000545432.5:ENST00000338850.5:ENST00000354497.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	37	2	2.1885	2.438415	2.68833	0.0202537	0.0184931	0.121364	0.108861
chr19	17239585	17239682	7151170	0	-	0.525773	(0.515,0.57]	chr19	722562	32	INTRON	INTRON	NR2F6	ENSG00000160113.6	ENST00000291442.4:ENST00000596878.1	protein_coding	protein_coding	protein_coding	protein_coding	3	37	2	2.1885	2.438415	2.68833	0.0202537	0.0184931	0.121364	0.108861
chrX	47142579	47142679	7814137	0	-	0.56	(0.515,0.57]	chrX	796410	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NDUFB11	ENSG00000147123.12	ENST00000687244.1:ENST00000276062.9:ENST00000692649.1:ENST00000377811.4:ENST00000690053.1:ENST00000690204.1:ENST00000685599.1:ENST00000688286.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	37	2	2.1885	2.438415	2.68833	0.0202537	0.0184931	0.121364	0.108861
chr15	58881188	58881284	6193574	0	-	0.40625	(0.378,0.408]	chr15	590010	7	INTRON	INTRON	SLTM	ENSG00000137776.17	ENST00000380516.7:ENST00000432750.5:ENST00000560494.1:ENST00000492526.5:ENST00000493062.5:ENST00000557924.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	87	2	2.27309	2.43836	2.60363	0.00769587	0.00153353	0.0754631	0.0361717
chr5	621733	621830	2313472	0	+	0.402062	(0.378,0.408]	chr5	223846	11	INTRON	INTRON	CEP72	ENSG00000112877.8	ENST00000264935.6	protein_coding	protein_coding	protein_coding	protein_coding	6	87	2	2.27309	2.43836	2.60363	0.00769587	0.00153353	0.0754631	0.0361717
chr16	66733972	66734053	6502056	0	-	0.296296	(0.28,0.32]	chr16	629018	1	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	DYNC1LI2	ENSG00000135720.13	ENST00000258198.7:ENST00000443351.6:ENST00000565532.5:ENST00000440564.6:ENST00000561727.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	74	2	2.40458	2.43834	2.4721	0.0141047	0.00906617	0.0959618	0.0854289
chr6	4795203	4795303	2791050	0	+	0.3	(0.28,0.32]	chr6	263598	180	INTRON	INTRON	CDYL	ENSG00000153046.18	ENST00000328908.9:ENST00000491864.1:ENST00000440139.5:ENST00000483019.1:ENST00000397588.8:ENST00000472453.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	74	2	2.40458	2.43834	2.4721	0.0141047	0.00906617	0.0959618	0.0854289
chr5	54065349	54065449	2618459	0	-	0.57	(0.515,0.57]	chr5	248837	172	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	37	2	2.11313	2.438335	2.76354	0.0256725	0.0147344	0.133676	0.0983813
chr1	30951247	30951344	411728	0	-	0.28866000000000003	(0.28,0.32]	chr1	49639	6	INTRON	INTRON	PUM1	ENSG00000134644.16	ENST00000426105.7:ENST00000373747.7:ENST00000257075.9:ENST00000424085.6:ENST00000525843.5:ENST00000440538.6:ENST00000498419.5:ENST00000373741.8:ENST00000373742.6:ENST00000529846.5:ENST00000525997.1:ENST00000527498.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	92	2	1.6789	2.43832	3.19774	0.017572	0.00548491	0.11319	0.0648867
chr7	128004048	128004148	3405946	0	+	0.39	(0.378,0.408]	chr7	318188	61	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000486037.1:ENST00000484767.5:ENST00000470723.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	73	2	1.82258	2.438235	3.05389	0.0341279	6.75567e-4	0.135102	0.0236067
chr6	52277988	52278088	3105843	0	-	0.48	(0.476,0.515]	chr6	290802	3	SS3_PROX	SS3_PROX:INTRON	MCM3	ENSG00000112118.20	ENST00000616552.4:ENST00000229854.12:ENST00000596288.7:ENST00000419835.8:ENST00000476448.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	52	2	1.7425	2.438195	3.13389	0.0417334	0.00405473	0.147007	0.0578376
chr9	135937233	135937330	4372315	0	-	0.494845	(0.476,0.515]	chr9	402502	34	INTRON	INTRON	UBAC1	ENSG00000130560.9	ENST00000371756.4:ENST00000489050.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	52	2	1.7425	2.438195	3.13389	0.0417334	0.00405473	0.147007	0.0578376
chr19	2196838	2196936	6996507	0	+	0.622449	(0.57,1]	chr19	693461	19	INTRON	INTRON	DOT1L	ENSG00000104885.19	ENST00000398665.8:ENST00000686010.1:ENST00000452696.5	protein_coding	protein_coding	protein_coding	protein_coding	5	32	2	1.87901	2.4381500000000003	2.99729	0.0152867	0.00538023	0.108569	0.0642754
chr1	31023596	31023696	412472	0	-	0.53	(0.515,0.57]	chr1	49725	161	INTRON	INTRON	PUM1	ENSG00000134644.16	ENST00000426105.7:ENST00000373747.7:ENST00000257075.9:ENST00000424085.6:ENST00000525843.5:ENST00000440538.6:ENST00000373741.8:ENST00000373742.6:ENST00000526215.5:ENST00000525948.5:ENST00000480602.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	28	2	2.35125	2.438145	2.52504	0.0436431	0.029342	0.162255	0.128055
chr1	75647086	75647186	490148	0	-	0.55	(0.515,0.57]	chr1	58159	42	INTRON	INTRON	ENSG00000230863	ENSG00000230863.3	ENST00000648424.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	2	28	2	2.35125	2.438145	2.52504	0.0436431	0.029342	0.162255	0.128055
chr12	24945719	24945816	5297879	0	-	0.515464	(0.515,0.57]	chr12	503885	4	EXON_LNCRNA	EXON_LNCRNA:INTRON	BCAT1	ENSG00000060982.15	ENST00000261192.12:ENST00000342945.9:ENST00000539780.5:ENST00000546285.1:ENST00000355164.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	28	2	2.35125	2.438145	2.52504	0.0436431	0.029342	0.162255	0.128055
chr12	50211251	50211351	5323551	0	-	0.53	(0.515,0.57]	chr12	507592	48	INTRON	INTRON	LIMA1	ENSG00000050405.14	ENST00000341247.9:ENST00000394943.7:ENST00000552823.5:ENST00000552783.5:ENST00000552909.5:ENST00000552720.5:ENST00000552008.5:ENST00000551486.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	28	2	2.35125	2.438145	2.52504	0.0436431	0.029342	0.162255	0.128055
chr2	33310056	33310155	739119	0	+	0.545455	(0.515,0.57]	chr2	85010	1	INTRON	INTRON	LTBP1	ENSG00000049323.16	ENST00000404816.7:ENST00000418533.6:ENST00000402934.5:ENST00000404525.5:ENST00000407925.5:ENST00000415140.6:ENST00000422669.1:ENST00000489740.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	28	2	2.35125	2.438145	2.52504	0.0436431	0.029342	0.162255	0.128055
chr16	16591884	16591984	6311781	0	+	0.44	(0.408,0.44]	chr16	604098	919	INTRON	INTRON	ENSG00000260126	ENSG00000260126.2	ENST00000567465.2	lncRNA	lncRNA	lncRNA	lncRNA	4	53	2	1.78881	2.438095	3.08738	0.0370259	0.00478231	0.139194	0.0636201
chr2	159608301	159608400	1252453	0	-	0.434343	(0.408,0.44]	chr2	132736	521	INTRON	INTRON	BAZ2B	ENSG00000123636.19	ENST00000392782.5:ENST00000392783.7:ENST00000541068.6:ENST00000437839.5:ENST00000483316.1:ENST00000552327.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	53	2	1.78881	2.438095	3.08738	0.0370259	0.00478231	0.139194	0.0636201
chr10	887948	888047	4542148	0	-	0.525253	(0.515,0.57]	chr10	419294	18	INTRON	INTRON	LARP4B	ENSG00000107929.16	ENST00000316157.8:ENST00000690516.1:ENST00000476529.5:ENST00000406525.6:ENST00000481118.1:ENST00000412411.1:ENST00000693234.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	52	2	2.11313	2.438065	2.763	0.0256725	0.00257143	0.133676	0.045134
chr10	819538	819635	4541441	0	-	0.494845	(0.476,0.515]	chr10	419215	18	EXON_MRNA	EXON_MRNA:INTRON	LARP4B	ENSG00000107929.16	ENST00000614908.5:ENST00000688365.1:ENST00000316157.8:ENST00000690516.1:ENST00000689323.1:ENST00000688042.1:ENST00000609318.5:ENST00000690211.1:ENST00000448368.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	69	2	2.29359	2.43806	2.58253	0.00600101	0.00584957	0.0689807	0.0674604
chr14	30709407	30709502	5675938	0	+	0.526316	(0.515,0.57]	chr14	540741	15	EXON_MRNA	EXON_MRNA:INTRON	SCFD1	ENSG00000092108.22	ENST00000678760.1:ENST00000677690.1:ENST00000678124.1:ENST00000678716.1:ENST00000678402.1:ENST00000679153.1:ENST00000678516.1:ENST00000678802.1:ENST00000679096.1:ENST00000679102.1:ENST00000678475.1:ENST00000676509.1:ENST00000676750.1:ENST00000679165.1:ENST00000676658.1:ENST00000678399.1:ENST00000678185.1:ENST00000677413.1:ENST00000555259.5:ENST00000554437.6:ENST00000676834.1:ENST00000678858.1:ENST00000553693.6:ENST00000676914.1:ENST00000676465.1:ENST00000676812.1:ENST00000678669.1:ENST00000676520.1:ENST00000676876.1:ENST00000677617.1:ENST00000676954.1:ENST00000677456.1:ENST00000678735.1:ENST00000679342.1:ENST00000678637.1:ENST00000677176.1:ENST00000557076.6:ENST00000677637.1:ENST00000677974.1:ENST00000458591.7:ENST00000484733.6:ENST00000556768.5:ENST00000544052.6:ENST00000463622.6:ENST00000676674.1:ENST00000677340.1:ENST00000311943.11:ENST00000679075.1:ENST00000678396.1:ENST00000676473.1:ENST00000396629.6:ENST00000678579.1:ENST00000678104.1:ENST00000676817.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	76	2	1.60369	2.43805	3.27241	0.027865	1.80226e-4	0.124158	0.0116696
chr19	12942353	12942450	7022508	0	+	0.391753	(0.378,0.408]	chr19	698295	10	INTRON	INTRON	CALR	ENSG00000179218.15	ENST00000316448.10:ENST00000586967.2:ENST00000586760.2:ENST00000680816.1:ENST00000588454.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	73	2	2.17296	2.43797	2.70298	0.0110512	0.00325723	0.0873897	0.0524329
chr6	157888170	157888270	3016417	0	+	0.34	(0.32,0.35]	chr6	281380	2	SS3_PROX	SS3_PROX:INTRON	SNX9	ENSG00000130340.17	ENST00000680863.1:ENST00000679814.1:ENST00000680464.1:ENST00000681186.1:ENST00000679732.1:ENST00000681183.1:ENST00000681534.1:ENST00000681651.1:ENST00000680089.1:ENST00000680078.1:ENST00000680974.1:ENST00000680095.1:ENST00000680015.1:ENST00000681138.1:ENST00000392185.8:ENST00000679790.1:ENST00000680495.1:ENST00000679691.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	51	2	1.88468	2.437965	2.99125	0.0515071	0.00958447	0.176696	0.0820838
chr16	21872373	21872473	6461967	0	-	0.49	(0.476,0.515]	chr16	623467	62	INTRON	INTRON	NPIPB4	ENSG00000185864.18	ENST00000543449.1:ENST00000538859.1	protein_coding	processed_transcript	protein_coding	processed_transcript	20	230	2	1.62812	2.43796	3.2478	0.0055542	5.04536e-6	0.0648867	0.00153316
chr10	28537849	28537915	4413850	0	+	0.333333	(0.32,0.35]	chr10	407143	1	SSB_ADJ	SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	WAC	ENSG00000095787.24	ENST00000680735.1:ENST00000375664.8:ENST00000428935.6:ENST00000651598.1:ENST00000628285.3:ENST00000681112.1:ENST00000679570.1:ENST00000375646.5:ENST00000354911.9:ENST00000347934.8:ENST00000420266.6:ENST00000651885.1:ENST00000651441.1:ENST00000679398.1:ENST00000424454.5:ENST00000442148.6:ENST00000448193.5:ENST00000414108.6:ENST00000679428.1:ENST00000439676.5:ENST00000345541.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	93	2	2.12121	2.43792	2.75463	0.00650424	0.00387748	0.0735144	0.0543578
chr16	3234195	3234265	6433484	0	-	0.442857	(0.44,0.476]	chr16	619180	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ZNF200	ENSG00000010539.12	ENST00000396868.7:ENST00000414144.7:ENST00000396871.8:ENST00000431561.7:ENST00000396870.8:ENST00000575948.1:ENST00000575617.1	protein_coding	protein_coding	protein_coding	protein_coding	4	58	2	2.13779	2.4378	2.73781	0.0264596	0.00276493	0.122506	0.04867
chr7	131392869	131392969	3417096	0	+	0.47	(0.44,0.476]	chr7	319206	35	INTRON	INTRON	MKLN1	ENSG00000128585.18	ENST00000421797.6:ENST00000416992.6:ENST00000429546.5:ENST00000446815.5:ENST00000494286.5:ENST00000352689.11:ENST00000494785.5:ENST00000458153.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	58	2	2.13779	2.4378	2.73781	0.0264596	0.00276493	0.122506	0.04867
chr14	22918302	22918400	5841616	0	-	0.571429	(0.57,1]	chr14	555213	1	INTRON	INTRON	RBM23	ENSG00000100461.18	ENST00000359890.8:ENST00000555209.5:ENST00000399922.6:ENST00000557667.5:ENST00000346528.9:ENST00000542016.6:ENST00000307814.10:ENST00000557403.5:ENST00000555722.5:ENST00000553920.5:ENST00000557227.5:ENST00000555714.5:ENST00000554256.5:ENST00000556687.5:ENST00000553902.5:ENST00000554955.5:ENST00000556984.5:ENST00000557549.5:ENST00000555676.5:ENST00000557571.5:ENST00000556862.5:ENST00000557464.5:ENST00000554618.5:ENST00000556365.1:ENST00000553777.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	44	2	2.39556	2.437745	2.47993	0.007207	0.00141347	0.0756278	0.0340865
chr16	31118840	31118934	6340412	0	+	0.361702	(0.35,0.378]	chr16	608269	2	INTRON	INTRON	KAT8	ENSG00000103510.20	ENST00000543774.6:ENST00000219797.9:ENST00000448516.6:ENST00000539683.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	100	2	1.99712	2.437735	2.87835	0.00798081	0.00160563	0.0766064	0.0367961
chr2	187540225	187540324	1289383	0	-	0.30303	(0.28,0.32]	chr2	135621	104	INTRON	INTRON	TFPI	ENSG00000003436.16	ENST00000233156.9:ENST00000409676.5:ENST00000339091.8:ENST00000421427.5:ENST00000437725.5:ENST00000453013.5:ENST00000417013.5:ENST00000420747.1	protein_coding	protein_coding	protein_coding	protein_coding	11	176	2	1.61367	2.437685	3.2617	0.014518	1.56549e-4	0.105495	0.0113754
chr9	133259318	133259418	4369869	0	-	0.51	(0.476,0.515]	chr9	402051	1	SS5_PROX	SS5_PROX:INTRON	ABO	ENSG00000175164.16	ENST00000679909.1:ENST00000453660.4:ENST00000647353.1:ENST00000611156.4:ENST00000538324.2:ENST00000651471.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	109	2	2.41425	2.437615	2.46098	0.00197914	0.00126759	0.0404068	0.0330359
chr7	139386828	139386928	3437865	0	+	0.45	(0.44,0.476]	chr7	320340	103	INTRON	INTRON	LUC7L2:FMC1-LUC7L2	ENSG00000146963.18:ENSG00000269955.2	ENST00000541170.7:ENST00000541515.3:ENST00000608368.5:ENST00000619796.4:ENST00000354926.9:ENST00000456182.5:ENST00000263545.7:ENST00000463912.5:ENST00000498518.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	59	2	1.7965	2.43756	3.07862	0.0205549	0.0060153	0.122348	0.0674604
chr11	76481031	76481130	4835865	0	+	0.444444	(0.44,0.476]	chr11	451075	78	INTRON	INTRON	EMSY	ENSG00000158636.17	ENST00000427574.6:ENST00000695367.1:ENST00000334736.7:ENST00000524490.5:ENST00000533972.5:ENST00000525038.5:ENST00000524767.5:ENST00000525919.5:ENST00000533248.5:ENST00000529032.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	58	2	2.42996	2.43755	2.44514	0.0104804	0.0087381	0.0855777	0.0845538
chr17	42251926	42252026	6771980	0	-	0.46	(0.44,0.476]	chr17	666964	194	INTRON	INTRON	STAT5B	ENSG00000173757.10	ENST00000293328.8:ENST00000468312.1:ENST00000415845.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	58	2	2.42996	2.43755	2.44514	0.0104804	0.0087381	0.0855777	0.0845538
chr8	52699723	52699822	3950961	0	-	0.454545	(0.44,0.476]	chr8	362390	124	INTRON	INTRON	RB1CC1	ENSG00000023287.13	ENST00000025008.10:ENST00000435644.6:ENST00000521611.1:ENST00000518710.5:ENST00000517963.1:ENST00000518211.1:ENST00000518468.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	11	146	2	2.33785	2.437505	2.53716	0.00284182	1.46183e-4	0.0473478	0.0105179
chr2	108616651	108616751	846676	0	+	0.44	(0.408,0.44]	chr2	94691	90	INTRON	INTRON	LIMS1	ENSG00000169756.17	ENST00000695516.1:ENST00000544547.6:ENST00000695517.1:ENST00000695518.1:ENST00000695519.1:ENST00000332345.10:ENST00000695520.1:ENST00000393310.5:ENST00000695521.1:ENST00000410093.5	protein_coding	protein_coding	protein_coding	protein_coding	5	71	2	2.08376	2.4375	2.79124	0.0129886	0.00276922	0.0991656	0.0469265
chr6	37953596	37953696	2858372	0	+	0.45	(0.44,0.476]	chr6	270231	232	INTRON	INTRON	ZFAND3	ENSG00000156639.12	ENST00000287218.9:ENST00000373391.6:ENST00000474522.5:ENST00000373389.5	protein_coding	protein_coding	protein_coding	protein_coding	5	59	2	1.65297	2.437445	3.22192	0.0331814	0.00360821	0.145918	0.0533855
chr15	75441306	75441405	6223969	0	-	0.393939	(0.378,0.408]	chr15	594518	45	INTRON	INTRON	SIN3A	ENSG00000169375.16	ENST00000394947.8:ENST00000360439.8:ENST00000394949.8:ENST00000564778.5:ENST00000562776.5:ENST00000568431.5:ENST00000567289.5:ENST00000570115.5:ENST00000568309.5:ENST00000568190.1:ENST00000568919.1:ENST00000565264.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	46	2	2.16303	2.43743	2.71183	0.0252473	0.0170789	0.12011	0.110899
chr7	119776499	119776599	3629104	0	-	0.38	(0.378,0.408]	chr7	337323	240	INTRON	INTRON	LINC02476	ENSG00000225546.6	ENST00000660268.1:ENST00000431071.5:ENST00000426413.2	lncRNA	lncRNA	lncRNA	lncRNA	15	208	2	2.42327	2.43738	2.45149	4.40819e-4	2.04987e-4	0.0193526	0.0124557
chr16	29504072	29504172	6470602	0	-	0.26	[0,0.28]	chr16	625137	34	INTRON	INTRON	ENSG00000288632:NPIPB12	ENSG00000288632.1:ENSG00000169203.17	ENST00000675579.1:ENST00000550665.5:ENST00000551448.5:ENST00000547235.5:ENST00000550690.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:nonsense_mediated_decay:lncRNA	6	117	2	1.83604	2.43727	3.0385	0.0268337	0.00116412	0.123442	0.0314524
chr16	10391448	10391547	6286331	0	+	0.30303	(0.28,0.32]	chr16	601959	36	INTRON	INTRON	ATF7IP2	ENSG00000166669.14	ENST00000564797.5:ENST00000396559.5:ENST00000396560.6:ENST00000562527.5:ENST00000561932.5:ENST00000543967.5:ENST00000562102.6:ENST00000535850.5:ENST00000569900.5:ENST00000569939.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	76	2	2.00031	2.4370649999999996	2.87382	0.014868	0.0110488	0.0989021	0.0928193
chr1	19163187	19163263	386325	0	-	0.407895	(0.378,0.408]	chr1	45976	2	INTRON	INTRON	UBR4	ENSG00000127481.15	ENST00000375254.8:ENST00000417040.1:ENST00000419533.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	45	2	2.41037	2.43705	2.46373	0.0382831	0.0100185	0.141795	0.0880217
chr3	172156064	172156164	1560715	0	+	0.38	(0.378,0.408]	chr3	161551	71	INTRON	INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000421757.5:ENST00000469491.5:ENST00000336824.8:ENST00000423424.5:ENST00000416957.5:ENST00000478016.1:ENST00000443501.1:ENST00000476794.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	45	2	2.41037	2.43705	2.46373	0.0382831	0.0100185	0.141795	0.0880217
chr16	20783891	20783991	6317792	0	+	0.5	(0.476,0.515]	chr16	604631	3	SS5_PROX	SS5_PROX:INTRON	ACSM3	ENSG00000005187.12	ENST00000289416.10:ENST00000440284.6:ENST00000562251.5:ENST00000563914.1:ENST00000567387.5:ENST00000561499.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	147	2	1.80968	2.43702	3.06436	0.00682475	7.05655e-5	0.0747556	0.0075214
chr9	133259518	133259618	4369871	0	-	0.54	(0.515,0.57]	chr9	402051	3	SS5_PROX	SS5_PROX:INTRON	ABO	ENSG00000175164.16	ENST00000679909.1:ENST00000453660.4:ENST00000647353.1:ENST00000611156.4:ENST00000538324.2:ENST00000651471.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	35	371	2	2.01072	2.437005	2.86329	2.62155e-4	1.58565e-6	0.0149415	7.58179e-4
chr16	58617388	58617487	6496258	0	-	0.383838	(0.378,0.408]	chr16	628638	175	INTRON	INTRON	CNOT1	ENSG00000125107.19	ENST00000317147.10:ENST00000569240.5:ENST00000567188.5:ENST00000441024.6:ENST00000565605.5:ENST00000564557.1:ENST00000569916.1:ENST00000565697.1:ENST00000569020.5:ENST00000568158.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	45	2	1.76032	2.43696	3.1136	0.0721577	0.00443339	0.187433	0.061054
chr1	202351740	202351840	292789	0	+	0.47	(0.44,0.476]	chr1	33758	22	INTRON	INTRON	PPP1R12B	ENSG00000077157.22	ENST00000391959.5:ENST00000608999.6:ENST00000480184.5:ENST00000356764.6:ENST00000476364.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	32	2	2.20949	2.43691	2.66433	0.0672585	0.0194358	0.183051	0.119831
chr11	46563841	46563941	4946958	0	-	0.46	(0.44,0.476]	chr11	463525	144	INTRON	INTRON	AMBRA1	ENSG00000110497.15	ENST00000683756.1:ENST00000534300.5:ENST00000533727.5:ENST00000314845.7:ENST00000458649.6:ENST00000528950.1:ENST00000531542.1:ENST00000526606.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	32	2	2.20949	2.43691	2.66433	0.0672585	0.0194358	0.183051	0.119831
chr15	23310974	23311074	5976875	0	+	0.45	(0.44,0.476]	chr15	568451	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HERC2P7	ENSG00000274471.2	ENST00000619355.1:ENST00000649848.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	2	32	2	2.20949	2.43691	2.66433	0.0672585	0.0194358	0.183051	0.119831
chr19	32614358	32614458	7168986	0	-	0.46	(0.44,0.476]	chr19	724362	60	INTRON	INTRON	ANKRD27	ENSG00000105186.16	ENST00000306065.9	protein_coding	protein_coding	protein_coding	protein_coding	2	32	2	2.20949	2.43691	2.66433	0.0672585	0.0194358	0.183051	0.119831
chr19	47199874	47199974	7084577	0	+	0.45	(0.44,0.476]	chr19	708811	21	INTRON	INTRON	SAE1	ENSG00000142230.13	ENST00000413379.7:ENST00000270225.12:ENST00000598840.5:ENST00000414294.6:ENST00000660039.1:ENST00000664120.1:ENST00000596995.1:ENST00000392776.3:ENST00000659110.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	32	2	2.20949	2.43691	2.66433	0.0672585	0.0194358	0.183051	0.119831
chr20	35379726	35379826	7334875	0	-	0.45	(0.44,0.476]	chr20	747159	51	INTRON	INTRON	UQCC1	ENSG00000101019.22	ENST00000374380.6:ENST00000374394.7:ENST00000374384.6:ENST00000359226.6:ENST00000349714.9:ENST00000457259.5:ENST00000374385.10:ENST00000453855.5:ENST00000397556.7:ENST00000424405.5:ENST00000443429.5:ENST00000438533.5:ENST00000397554.5:ENST00000491125.5:ENST00000491040.5:ENST00000397553.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	32	2	2.20949	2.43691	2.66433	0.0672585	0.0194358	0.183051	0.119831
chr3	38179809	38179909	1398687	0	+	0.46	(0.44,0.476]	chr3	146661	135	INTRON	INTRON	OXSR1	ENSG00000172939.9	ENST00000492714.1:ENST00000446845.5:ENST00000311806.8:ENST00000426620.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	32	2	2.20949	2.43691	2.66433	0.0672585	0.0194358	0.183051	0.119831
chr6	7109800	7109900	2798383	0	+	0.45	(0.44,0.476]	chr6	263723	7	INTRON	INTRON	RREB1	ENSG00000124782.21	ENST00000379933.7:ENST00000491191.5:ENST00000471433.5:ENST00000379938.7:ENST00000467782.5:ENST00000349384.10:ENST00000334984.10:ENST00000475946.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	32	2	2.20949	2.43691	2.66433	0.0672585	0.0194358	0.183051	0.119831
chr9	112319864	112319964	4317823	0	-	0.47	(0.44,0.476]	chr9	397079	216	INTRON	INTRON	PTBP3	ENSG00000119314.16	ENST00000334318.10:ENST00000458258.5:ENST00000374257.6:ENST00000374255.6:ENST00000343327.6:ENST00000487997.1:ENST00000210227.4:ENST00000450374.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	32	2	2.20949	2.43691	2.66433	0.0672585	0.0194358	0.183051	0.119831
chr10	118019803	118019903	4702860	0	-	0.37	(0.35,0.378]	chr10	433769	43	INTRON	INTRON	RAB11FIP2	ENSG00000107560.12	ENST00000355624.8:ENST00000369199.5	protein_coding	protein_coding	protein_coding	protein_coding	5	76	2	2.4077	2.4369050000000003	2.46611	0.0122026	0.00297318	0.0910127	0.0501309
chr3	168088050	168088150	1854861	0	-	0.34	(0.32,0.35]	chr3	186419	393	INTRON	INTRON	GOLIM4	ENSG00000173905.9	ENST00000470487.6:ENST00000309027.4	protein_coding	protein_coding	protein_coding	protein_coding	4	60	2	1.88255	2.4369	2.99125	0.0269187	0.00958447	0.135288	0.0820838
chr5	112767989	112768088	2452193	0	+	0.40404	(0.378,0.408]	chr5	234932	2	INTRON	INTRON	APC	ENSG00000134982.17	ENST00000507379.5:ENST00000257430.9:ENST00000508624.5:ENST00000508376.6:ENST00000512211.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	61	2	2.00398	2.436765	2.86955	0.0393906	0.00159247	0.143072	0.0367961
chr15	49234727	49234826	6019768	0	+	0.464646	(0.44,0.476]	chr15	573724	82	INTRON	INTRON	GALK2	ENSG00000156958.15	ENST00000559883.5:ENST00000559963.5:ENST00000327171.7:ENST00000560654.5:ENST00000558775.5:ENST00000396509.6:ENST00000558956.5:ENST00000559208.5:ENST00000560031.6:ENST00000560119.5:ENST00000558145.5:ENST00000544523.5:ENST00000560138.5:ENST00000559423.5:ENST00000559454.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	32	2	2.38219	2.436655	2.49112	0.045456	0.0315968	0.149888	0.144381
chr17	78817874	78817971	6846160	0	-	0.463918	(0.44,0.476]	chr17	677414	30	INTRON	INTRON	USP36	ENSG00000055483.20	ENST00000589225.5:ENST00000592231.6:ENST00000449938.7:ENST00000542802.7:ENST00000693020.1:ENST00000312010.10:ENST00000588086.6:ENST00000588467.5:ENST00000586066.3:ENST00000590312.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	32	2	2.38219	2.436655	2.49112	0.045456	0.0315968	0.149888	0.144381
chr22	40201531	40201631	7518420	0	+	0.46	(0.44,0.476]	chr22	768108	230	INTRON	INTRON	TNRC6B	ENSG00000100354.21	ENST00000301923.13:ENST00000402203.5:ENST00000454349.7:ENST00000489500.1:ENST00000335727.13	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	32	2	2.38219	2.436655	2.49112	0.045456	0.0315968	0.149888	0.144381
chr6	100633808	100633908	3168642	0	-	0.47	(0.44,0.476]	chr6	295647	22	INTRON	INTRON	ASCC3	ENSG00000112249.14	ENST00000369162.7	protein_coding	protein_coding	protein_coding	protein_coding	2	32	2	2.38219	2.436655	2.49112	0.045456	0.0315968	0.149888	0.144381
chr8	123270567	123270666	4041786	0	-	0.444444	(0.44,0.476]	chr8	368625	28	INTRON	INTRON	ZHX1-C8orf76:ZHX1	ENSG00000259305.6:ENSG00000165156.15	ENST00000622816.2:ENST00000297857.3:ENST00000395571.8:ENST00000522655.5:ENST00000522595.5:ENST00000524267.5:ENST00000480132.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	32	2	2.38219	2.436655	2.49112	0.045456	0.0315968	0.149888	0.144381
chr10	99713940	99714032	4677628	0	-	0.347826	(0.32,0.35]	chr10	431419	6	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	COX15	ENSG00000014919.13	ENST00000016171.6:ENST00000370483.9	protein_coding	protein_coding	protein_coding	protein_coding	2	37	2	2.23182	2.4365550000000002	2.64129	0.068598	0.0222819	0.184298	0.124303
chr22	49859279	49859379	7543360	0	+	0.34	(0.32,0.35]	chr22	770840	49	INTRON	INTRON	ZBED4	ENSG00000100426.7	ENST00000216268.6	protein_coding	protein_coding	protein_coding	protein_coding	2	37	2	2.23182	2.4365550000000002	2.64129	0.068598	0.0222819	0.184298	0.124303
chr8	99405110	99405210	3815207	0	+	0.35	(0.32,0.35]	chr8	353207	129	INTRON	INTRON	VPS13B	ENSG00000132549.20	ENST00000496144.5:ENST00000683334.1:ENST00000357162.7:ENST00000358544.7:ENST00000683619.1:ENST00000682153.1:ENST00000682358.1:ENST00000682145.1:ENST00000355155.6:ENST00000682234.1:ENST00000683486.1:ENST00000522802.5:ENST00000521037.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	37	2	2.23182	2.4365550000000002	2.64129	0.068598	0.0222819	0.184298	0.124303
chr17	67945146	67945227	6668928	0	+	0.407407	(0.378,0.408]	chr17	650673	3	SS3_PROX	SS3_PROX:INTRON	BPTF	ENSG00000171634.19	ENST00000306378.11:ENST00000544778.6:ENST00000321892.8:ENST00000342579.8:ENST00000644067.1:ENST00000424123.7:ENST00000580465.5:ENST00000582406.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	45	2	1.97143	2.436525	2.90162	0.0398704	0.0113157	0.161534	0.0886121
chr2	202206959	202207057	1314748	0	-	0.387755	(0.378,0.408]	chr2	137879	9	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SUMO1	ENSG00000116030.17	ENST00000392246.7:ENST00000392245.5:ENST00000409368.5:ENST00000392244.7:ENST00000409712.5:ENST00000409181.1:ENST00000409498.6:ENST00000409205.5	protein_coding	protein_coding	protein_coding	protein_coding	3	45	2	1.97143	2.436525	2.90162	0.0398704	0.0113157	0.161534	0.0886121
chr10	17666711	17666810	4399492	0	+	0.393939	(0.378,0.408]	chr10	406156	58	INTRON	INTRON	STAM	ENSG00000136738.15	ENST00000377524.8:ENST00000377500.1:ENST00000445846.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	62	2	1.9714	2.43651	2.90162	0.0113157	0.0109363	0.0924799	0.0886121
chr22	17657431	17657531	7475208	0	+	0.34	(0.32,0.35]	chr22	762160	12	INTRON	INTRON	BCL2L13	ENSG00000099968.18	ENST00000399781.5:ENST00000399782.5:ENST00000337612.9:ENST00000418951.6:ENST00000538149.5:ENST00000543133.5:ENST00000611738.4:ENST00000616863.4:ENST00000618481.4:ENST00000498133.5:ENST00000317582.10:ENST00000464649.1:ENST00000493680.5:ENST00000355028.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	37	2	2.30673	2.436455	2.56618	0.0584434	0.0274185	0.167723	0.136498
chr9	123450849	123450949	4341209	0	-	0.34	(0.32,0.35]	chr9	399025	1	SS3_PROX	SS3_PROX:INTRON	DENND1A	ENSG00000119522.17	ENST00000373624.6:ENST00000473039.5:ENST00000394215.7:ENST00000373620.7:ENST00000491650.5:ENST00000497135.5:ENST00000373618.1:ENST00000479305.5:ENST00000462245.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	37	2	2.30673	2.436455	2.56618	0.0584434	0.0274185	0.167723	0.136498
chr3	143002861	143002960	1529085	0	+	0.474747	(0.44,0.476]	chr3	159324	1	INTRON	INTRON	U2SURP	ENSG00000163714.18	ENST00000600150.5:ENST00000488497.7:ENST00000493782.5:ENST00000473835.7:ENST00000461591.5:ENST00000493598.6:ENST00000463563.6:ENST00000470400.5:ENST00000465175.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	88	2	1.99228	2.43645	2.88062	0.00615695	0.001878	0.0711648	0.039073
chr19	23658287	23658384	7163670	0	-	0.402062	(0.378,0.408]	chr19	724026	11	INTRON	INTRON	ZNF675	ENSG00000197372.10	ENST00000601935.5:ENST00000600313.5:ENST00000596211.5:ENST00000359788.9:ENST00000599535.1:ENST00000597074.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	61	2	2.35527	2.4363	2.51733	0.0121511	0.00808319	0.0963966	0.0766625
chr1	27912366	27912465	407772	0	-	0.414141	(0.408,0.44]	chr1	49095	47	INTRON	INTRON	RPA2	ENSG00000117748.10	ENST00000373912.8:ENST00000373909.7:ENST00000313433.11:ENST00000444045.1	protein_coding	protein_coding	protein_coding	protein_coding	5	70	2	2.40661	2.4362399999999997	2.46587	0.011475	0.00280622	0.0888882	0.0488779
chr5	54287927	54288027	2620692	0	-	0.29	(0.28,0.32]	chr5	248862	17	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2:ENST00000505630.5:ENST00000505383.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	75	2	1.86825	2.4361	3.00395	0.017708	0.0101329	0.11319	0.0850389
chr19	2203475	2203573	6996575	0	+	0.530612	(0.515,0.57]	chr19	693473	3	INTRON	INTRON	DOT1L	ENSG00000104885.19	ENST00000398665.8:ENST00000686010.1	protein_coding	protein_coding	protein_coding	protein_coding	15	161	2	1.9435500000000001	2.43602	2.92849	0.00181313	3.1416e-5	0.0384415	0.00449379
chr2	127747945	127748045	1225242	0	-	0.38	(0.378,0.408]	chr2	130486	95	INTRON	INTRON	WDR33	ENSG00000136709.12	ENST00000322313.9:ENST00000436787.5:ENST00000393006.5	protein_coding	protein_coding	protein_coding	protein_coding	4	60	2	2.26009	2.435985	2.61188	0.0188651	0.0047055	0.108861	0.0631419
chr17	32478950	32479050	6598701	0	+	0.55	(0.515,0.57]	chr17	642018	3	SS3_PROX	SS3_PROX:INTRON	PSMD11	ENSG00000108671.11	ENST00000649012.1:ENST00000457654.6:ENST00000261712.8:ENST00000584340.1:ENST00000493026.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	54	2	1.7074	2.435975	3.16455	0.0779432	3.23741e-4	0.196685	0.0159645
chr16	16534406	16534506	6311206	0	+	0.31	(0.28,0.32]	chr16	604098	344	INTRON	INTRON	ENSG00000260126	ENSG00000260126.2	ENST00000567465.2	lncRNA	lncRNA	lncRNA	lncRNA	5	75	2	1.60333	2.435915	3.2685	0.0413158	0.00432734	0.161534	0.0579331
chr7	152284705	152284804	3679769	0	-	0.313131	(0.28,0.32]	chr7	341617	105	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000684262.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	75	2	1.60333	2.435915	3.2685	0.0413158	0.00432734	0.161534	0.0579331
chr3	195964378	195964470	1896700	0	-	0.358696	(0.35,0.378]	chr3	189800	6	INTRON	INTRON	SDHAP1	ENSG00000185485.14	ENST00000427149.5:ENST00000427841.5:ENST00000354559.9:ENST00000440850.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	10	148	2	2.19049	2.43588	2.68127	0.00365102	2.14499e-4	0.0535094	0.0128548
chr1	8716095	8716195	372767	0	-	0.46	(0.44,0.476]	chr1	43545	130	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000656437.1:ENST00000659924.1:ENST00000480342.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	45	2	2.29126	2.4357949999999997	2.58033	0.0247511	0.0165638	0.131869	0.102621
chr1	35279063	35279163	68391	0	+	0.6	(0.57,1]	chr1	8717	96	INTRON	INTRON	ZMYM4	ENSG00000146463.12	ENST00000314607.11:ENST00000441447.1	protein_coding	protein_coding	protein_coding	protein_coding	3	25	2	2.36411	2.435765	2.50742	0.0408868	0.00631173	0.161534	0.0687526
chr19	19327689	19327788	7034805	0	+	0.575758	(0.57,1]	chr19	701329	54	INTRON	INTRON	MAU2	ENSG00000129933.21	ENST00000262815.13:ENST00000609122.5:ENST00000586189.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	25	2	2.36411	2.435765	2.50742	0.0408868	0.00631173	0.161534	0.0687526
chr1	52380646	52380745	456820	0	-	0.414141	(0.408,0.44]	chr1	54847	47	INTRON	INTRON	ORC1	ENSG00000085840.13	ENST00000371568.8:ENST00000371566.1	protein_coding	protein_coding	protein_coding	protein_coding	5	70	2	1.96534	2.43567	2.906	0.0216499	0.00131817	0.11491	0.0333932
chr6	31817770	31817858	2843798	0	+	0.340909	(0.32,0.35]	chr6	267896	2	UTR3	UTR3:EXON_MRNA	HSPA1A	ENSG00000204389.10	ENST00000608703.1:ENST00000375651.7	protein_coding	protein_coding	protein_coding	protein_coding	26	404	2	2.37448	2.4356150000000003	2.49675	2.50764e-4	4.85217e-5	0.0146456	0.00568666
chr1	26708228	26708328	51293	0	+	0.32	(0.28,0.32]	chr1	6542	103	INTRON	INTRON	ARID1A	ENSG00000117713.21	ENST00000430799.7:ENST00000324856.13:ENST00000637465.1:ENST00000457599.6	protein_coding	protein_coding	protein_coding	protein_coding	8	137	2	1.7584	2.435595	3.11279	0.0218117	1.6215e-4	0.11491	0.0109774
chr11	74968770	74968868	4830305	0	+	0.479592	(0.476,0.515]	chr11	450684	25	INTRON	INTRON	SPCS2	ENSG00000118363.13	ENST00000530257.5:ENST00000526361.1:ENST00000532972.5:ENST00000263672.11:ENST00000528265.1:ENST00000527225.1:ENST00000526883.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	43	2	1.79693	2.435575	3.07422	0.0649782	0.00506023	0.179417	0.0646039
chr13	46177423	46177523	5586751	0	-	0.53	(0.515,0.57]	chr13	533977	78	INTRON	INTRON	LCP1	ENSG00000136167.15	ENST00000398576.6:ENST00000323076.7:ENST00000442275.1:ENST00000460190.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	38	2	2.21273	2.435535	2.65834	0.0196151	0.0187418	0.117523	0.109486
chr5	53989913	53990013	2617703	0	-	0.52	(0.515,0.57]	chr5	248835	779	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	38	2	2.21273	2.435535	2.65834	0.0196151	0.0187418	0.117523	0.109486
chr7	130989792	130989892	3641488	0	-	0.54	(0.515,0.57]	chr7	338718	53	INTRON	INTRON	LINC-PINT	ENSG00000231721.7	ENST00000647388.1:ENST00000423414.5:ENST00000433079.5:ENST00000642156.1:ENST00000646429.1:ENST00000451786.5:ENST00000646587.1:ENST00000645248.1:ENST00000642602.1:ENST00000644804.1:ENST00000647288.1:ENST00000643373.1:ENST00000643135.1:ENST00000643855.1:ENST00000643874.1:ENST00000644188.1:ENST00000435523.5:ENST00000431189.1	lncRNA	lncRNA	lncRNA	lncRNA	3	38	2	2.21273	2.435535	2.65834	0.0196151	0.0187418	0.117523	0.109486
chr5	131715475	131715573	2719924	0	-	0.265306	[0,0.28]	chr5	255702	45	INTRON	INTRON	FNIP1	ENSG00000217128.13	ENST00000510461.6:ENST00000307954.12:ENST00000307968.11:ENST00000511848.1	protein_coding	protein_coding	protein_coding	protein_coding	5	88	2	2.0939	2.43553	2.77716	0.022039	0.00875794	0.115395	0.0846118
chr1	13767241	13767341	31830	0	+	0.32	(0.28,0.32]	chr1	3859	89	INTRON	INTRON	PRDM2	ENSG00000116731.23	ENST00000311066.10:ENST00000376048.9:ENST00000235372.11:ENST00000491134.5:ENST00000502727.5:ENST00000502724.5:ENST00000413440.5:ENST00000343137.8:ENST00000491815.1:ENST00000503842.5:ENST00000505823.5:ENST00000407521.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	55	2	2.00989	2.43551	2.86113	0.0427801	0.0122675	0.148082	0.0969406
chr7	156891269	156891369	3687999	0	-	0.29	(0.28,0.32]	chr7	342096	540	INTRON	INTRON	LMBR1	ENSG00000105983.23	ENST00000353442.10:ENST00000415428.5:ENST00000454132.5:ENST00000434503.5:ENST00000430278.5:ENST00000434278.5:ENST00000444719.5:ENST00000461469.5:ENST00000414218.1:ENST00000434453.1:ENST00000498034.5:ENST00000433968.5:ENST00000485985.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	55	2	2.00989	2.43551	2.86113	0.0427801	0.0122675	0.148082	0.0969406
chr2	87479722	87479822	826168	0	+	0.42	(0.408,0.44]	chr2	92428	1	SS3_PROX	SS3_PROX:INTRON	CYTOR:ENSG00000284879	ENSG00000222041.12:ENSG00000284879.1	ENST00000642796.1:ENST00000643589.1:ENST00000642451.1:ENST00000646386.1:ENST00000644478.1:ENST00000409139.6:ENST00000331944.10:ENST00000644125.1:ENST00000643743.1:ENST00000644577.1:ENST00000643276.1:ENST00000409898.2:ENST00000419680.6:ENST00000644976.1:ENST00000643070.1:ENST00000646855.1:ENST00000414584.1:ENST00000455131.5:ENST00000646636.1:ENST00000642293.1:ENST00000423846.5:ENST00000644040.1:ENST00000645138.1:ENST00000437561.2:ENST00000629257.1:ENST00000414030.6	lncRNA	lncRNA	lncRNA	lncRNA	8	109	2	2.19696	2.43544	2.67392	0.00315257	0.00106946	0.0501351	0.0300133
chr7	73571881	73571981	3555376	0	-	0.48	(0.476,0.515]	chr7	330877	4	EXON_LNCRNA	EXON_LNCRNA:INTRON	TBL2	ENSG00000106638.18	ENST00000305632.11:ENST00000450285.5:ENST00000424598.5:ENST00000459913.5:ENST00000417008.5:ENST00000432538.5:ENST00000433464.5:ENST00000426966.5:ENST00000452475.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	43	2	1.99197	2.43538	2.87879	0.039572	0.00999149	0.143072	0.0879541
chr8	125943689	125943789	3859302	0	+	0.25	[0,0.28]	chr8	355335	6	INTRON	INTRON	ENSG00000286122	ENSG00000286122.1	ENST00000651999.1:ENST00000652177.1	lncRNA	lncRNA	lncRNA	lncRNA	5	87	2	1.49535	2.435325	3.3753	0.0670881	0.00242466	0.183051	0.0454587
chr1	70207175	70207275	142444	0	+	0.48	(0.476,0.515]	chr1	15965	10	INTRON	INTRON	SRSF11	ENSG00000116754.14	ENST00000370951.5:ENST00000463877.1:ENST00000687381.1:ENST00000370950.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	32	2	2.13854	2.435295	2.73205	0.0776563	0.0159328	0.196285	0.109464
chr14	73452432	73452531	5919246	0	-	0.515152	(0.476,0.515]	chr14	562258	420	INTRON	INTRON	NUMB	ENSG00000133961.21	ENST00000554546.5:ENST00000555238.6:ENST00000557597.5:ENST00000356296.8:ENST00000555394.5:ENST00000554394.5:ENST00000555307.5:ENST00000554315.5:ENST00000555987.5:ENST00000556112.5:ENST00000557774.5:ENST00000554818.5:ENST00000557031.5:ENST00000556600.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	32	2	2.13854	2.435295	2.73205	0.0776563	0.0159328	0.196285	0.109464
chr19	12537544	12537644	7139817	0	-	0.49	(0.476,0.515]	chr19	720329	47	INTRON	INTRON	ZNF564	ENSG00000249709.8	ENST00000339282.12:ENST00000427105.1:ENST00000596193.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	32	2	2.13854	2.435295	2.73205	0.0776563	0.0159328	0.196285	0.109464
chr6	35880630	35880730	3088412	0	-	0.51	(0.476,0.515]	chr6	288860	59	INTRON	INTRON	SRPK1	ENSG00000096063.16	ENST00000373825.7:ENST00000423325.6:ENST00000346162.10:ENST00000361690.7:ENST00000510290.5:ENST00000373821.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	32	2	2.13854	2.435295	2.73205	0.0776563	0.0159328	0.196285	0.109464
chr7	67155564	67155663	3328240	0	+	0.515152	(0.476,0.515]	chr7	309460	376	INTRON	INTRON	TYW1	ENSG00000198874.14	ENST00000359626.10:ENST00000361660.8:ENST00000495971.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	32	2	2.13854	2.435295	2.73205	0.0776563	0.0159328	0.196285	0.109464
chr3	149082433	149082533	1840959	0	-	0.41	(0.408,0.44]	chr3	185197	60	INTRON	INTRON	HLTF	ENSG00000071794.16	ENST00000310053.10:ENST00000465259.5:ENST00000392912.6:ENST00000494055.5	protein_coding	protein_coding	protein_coding	protein_coding	13	162	2	2.05566	2.43529	2.81492	0.00118225	2.99674e-4	0.031662	0.0160591
chr6	63644839	63644938	2883378	0	+	0.444444	(0.44,0.476]	chr6	273549	77	INTRON	INTRON	PHF3	ENSG00000118482.12	ENST00000262043.8:ENST00000506783.5:ENST00000481385.6:ENST00000515594.5:ENST00000494284.6:ENST00000509876.5:ENST00000509330.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	77	2	1.36075	2.435145	3.50954	0.0389168	0.00116647	0.160783	0.0312127
chr17	82272316	82272416	6852824	0	-	0.38	(0.378,0.408]	chr17	679171	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	CSNK1D	ENSG00000141551.15	ENST00000398519.9:ENST00000314028.11:ENST00000581241.5:ENST00000392334.6:ENST00000403276.7:ENST00000582844.5:ENST00000580446.1:ENST00000581660.5:ENST00000578194.5:ENST00000579316.5:ENST00000584472.5:ENST00000585026.1:ENST00000579308.1:ENST00000581655.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	83	2	1.88716	2.435055	2.98295	0.017192	9.47389e-4	0.104099	0.0282007
chr6	34853319	34853418	2849016	0	+	0.525253	(0.515,0.57]	chr6	269159	166	INTRON	INTRON	UHRF1BP1	ENSG00000065060.18	ENST00000192788.6	protein_coding	protein_coding	protein_coding	protein_coding	8	93	2	2.261	2.43504	2.60908	0.00333544	5.10997e-4	0.0512081	0.020315
chr3	47733652	47733751	1684590	0	-	0.525253	(0.515,0.57]	chr3	172094	42	INTRON	INTRON	SMARCC1	ENSG00000173473.11	ENST00000254480.10:ENST00000425518.5:ENST00000485833.1:ENST00000454240.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	45	2	1.49871	2.43498	3.37125	0.0770828	0.00136343	0.196285	0.0339121
chrX	44890386	44890486	7648774	0	+	0.41	(0.408,0.44]	chrX	782726	160	INTRON	INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000675440.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000621147.5:ENST00000475233.1:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	66	2	1.66945	2.434895	3.20034	0.0218479	0.00398025	0.123836	0.0549214
chr16	23874711	23874811	6324147	0	+	0.37	(0.35,0.378]	chr16	605697	55	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000645517.1:ENST00000498739.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	57	2	1.70607	2.43489	3.16371	0.0482819	0.00383956	0.153283	0.0562562
chr22	19905817	19905916	7555954	0	-	0.494949	(0.476,0.515]	chr22	772518	64	INTRON	INTRON	TXNRD2	ENSG00000184470.21	ENST00000400518.5:ENST00000542719.6:ENST00000494454.5:ENST00000474308.5:ENST00000400525.6:ENST00000400521.7:ENST00000400519.6:ENST00000635155.1:ENST00000491939.6:ENST00000334363.14:ENST00000475995.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	97	2	2.07116	2.43486	2.79856	0.00731321	7.60949e-4	0.076234	0.0252625
chr1	20740659	20740757	389387	0	-	0.489796	(0.476,0.515]	chr1	46510	5	UTR3	UTR3:EXON_MRNA	HP1BP3	ENSG00000127483.19	ENST00000438032.6	protein_coding	protein_coding	protein_coding	protein_coding	2	32	2	2.38442	2.434845	2.48527	0.0417472	0.03496	0.161736	0.13747500000000001
chr1	31322848	31322948	61424	0	+	0.48	(0.476,0.515]	chr1	7841	33	INTRON	INTRON	ZCCHC17	ENSG00000121766.16	ENST00000618216.4:ENST00000546109.5:ENST00000616393.4:ENST00000616859.4:ENST00000615916.4:ENST00000479629.5:ENST00000373714.5:ENST00000344147.10:ENST00000627541.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	32	2	2.38442	2.434845	2.48527	0.0417472	0.03496	0.161736	0.13747500000000001
chr10	92856020	92856120	4491691	0	+	0.48	(0.476,0.515]	chr10	413705	70	INTRON	INTRON	EXOC6	ENSG00000138190.17	ENST00000671701.1:ENST00000672817.1:ENST00000371552.8:ENST00000443748.6:ENST00000371543.5:ENST00000260762.10	protein_coding	protein_coding	protein_coding	protein_coding	2	32	2	2.38442	2.434845	2.48527	0.0417472	0.03496	0.161736	0.13747500000000001
chr15	94861558	94861657	6105244	0	+	0.50505	(0.476,0.515]	chr15	581666	43	INTRON	INTRON	ENSG00000277654	ENSG00000277654.6	ENST00000618611.4:ENST00000648065.1:ENST00000618377.1:ENST00000621842.4:ENST00000615751.4:ENST00000614581.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	2	32	2	2.38442	2.434845	2.48527	0.0417472	0.03496	0.161736	0.13747500000000001
chr17	27509418	27509518	6581297	0	+	0.5	(0.476,0.515]	chr17	639666	252	INTRON	INTRON	KSR1	ENSG00000141068.15	ENST00000644974.2:ENST00000583370.5:ENST00000398988.7:ENST00000268763.10:ENST00000509603.6:ENST00000582311.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	32	2	2.38442	2.434845	2.48527	0.0417472	0.03496	0.161736	0.13747500000000001
chr6	17791882	17791980	3066560	0	-	0.479592	(0.476,0.515]	chr6	284959	16	INTRON	INTRON	KIF13A	ENSG00000137177.20	ENST00000378814.9:ENST00000502297.5:ENST00000259711.11:ENST00000378826.6:ENST00000378843.6:ENST00000636847.1:ENST00000358380.10:ENST00000506044.1:ENST00000514714.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	32	2	2.38442	2.434845	2.48527	0.0417472	0.03496	0.161736	0.13747500000000001
chr6	70569252	70569352	2895533	0	+	0.5	(0.476,0.515]	chr6	274071	17	INTRON	INTRON	SDHAF4	ENSG00000154079.6	ENST00000370474.4	protein_coding	protein_coding	protein_coding	protein_coding	2	32	2	2.38442	2.434845	2.48527	0.0417472	0.03496	0.161736	0.13747500000000001
chr7	105501720	105501819	3604653	0	-	0.50505	(0.476,0.515]	chr7	336252	61	INTRON	INTRON	PUS7	ENSG00000091127.14	ENST00000481939.5:ENST00000469408.6:ENST00000356362.6:ENST00000482157.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	32	2	2.38442	2.434845	2.48527	0.0417472	0.03496	0.161736	0.13747500000000001
chr7	140729480	140729579	3661742	0	-	0.50505	(0.476,0.515]	chr7	339961	26	INTRON	INTRON	BRAF	ENSG00000157764.14	ENST00000496384.7:ENST00000644969.2:ENST00000644120.1:ENST00000642875.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	32	2	2.38442	2.434845	2.48527	0.0417472	0.03496	0.161736	0.13747500000000001
chr8	127940746	127940844	3861525	0	+	0.489796	(0.476,0.515]	chr8	355463	4	INTRON	INTRON	PVT1	ENSG00000249859.13	ENST00000667305.1:ENST00000690350.1:ENST00000653522.1:ENST00000661830.1:ENST00000657289.1:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000656880.1:ENST00000660200.1:ENST00000657211.1:ENST00000653845.1:ENST00000517525.2:ENST00000665856.1:ENST00000651587.1:ENST00000692980.1:ENST00000666353.1:ENST00000654324.1:ENST00000657693.1:ENST00000666080.1:ENST00000667539.1:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000664293.1:ENST00000662410.1:ENST00000670795.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000654091.1:ENST00000657356.1:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000662061.1:ENST00000656491.1:ENST00000667714.1:ENST00000654105.1:ENST00000665721.1:ENST00000660438.1:ENST00000659326.1:ENST00000666842.1:ENST00000517790.2:ENST00000654369.1:ENST00000664995.1:ENST00000656532.1:ENST00000661988.1:ENST00000670714.1:ENST00000669951.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000656693.1:ENST00000668123.1:ENST00000666776.1:ENST00000664299.1:ENST00000669272.1:ENST00000659912.1:ENST00000670532.1:ENST00000660896.1:ENST00000667149.1:ENST00000523068.2:ENST00000519481.6:ENST00000669082.1:ENST00000671088.1:ENST00000670204.1:ENST00000652695.1:ENST00000517838.6:ENST00000663461.1:ENST00000513868.6:ENST00000670626.1:ENST00000669407.1	lncRNA	lncRNA	lncRNA	lncRNA	2	32	2	2.38442	2.434845	2.48527	0.0417472	0.03496	0.161736	0.13747500000000001
chr9	137720765	137720865	4224507	0	+	0.48	(0.476,0.515]	chr9	388223	31	INTRON	INTRON	EHMT1	ENSG00000181090.21	ENST00000462484.5:ENST00000371394.6:ENST00000460843.6:ENST00000629335.2:ENST00000636027.1:ENST00000460486.3:ENST00000637161.1:ENST00000637261.1:ENST00000637977.1:ENST00000626066.2:ENST00000638071.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	32	2	2.38442	2.434845	2.48527	0.0417472	0.03496	0.161736	0.13747500000000001
chr17	75217495	75217589	6674384	0	+	0.489362	(0.476,0.515]	chr17	651375	13	INTRON	INTRON	NUP85	ENSG00000125450.11	ENST00000245544.9:ENST00000583948.5:ENST00000579324.5:ENST00000449421.6:ENST00000581104.5:ENST00000579298.5:ENST00000578830.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	95	2	2.17861	2.434825	2.69104	0.00544196	9.94264e-4	0.0646078	0.0290397
chr16	89468867	89468967	6543385	0	-	0.28	[0,0.28]	chr16	634281	372	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	104	2	1.56265	2.4348	3.30695	0.0287651	0.00469836	0.139973	0.0600108
chr1	213192863	213192963	312126	0	+	0.35	(0.32,0.35]	chr1	35957	160	INTRON	INTRON	RPS6KC1	ENSG00000136643.12	ENST00000615329.4:ENST00000543354.5:ENST00000614059.4:ENST00000543470.5:ENST00000366960.8:ENST00000366959.4:ENST00000490299.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	60	2	2.02133	2.4347250000000003	2.84812	0.017146	0.0147575	0.111072	0.0983813
chr16	7975129	7975229	6440259	0	-	0.49	(0.476,0.515]	chr16	620339	804	INTRON	INTRON	ENSG00000260289	ENSG00000260289.2	ENST00000670665.1:ENST00000654046.1:ENST00000567103.2	lncRNA	lncRNA	lncRNA	lncRNA	3	44	2	2.21677	2.4347250000000003	2.65268	0.0207026	0.0201975	0.121243	0.110999
chr7	67307876	67307976	3329138	0	+	0.5	(0.476,0.515]	chr7	309488	14	INTRON	INTRON	STAG3L4	ENSG00000106610.16	ENST00000416602.6:ENST00000689067.1:ENST00000691248.1:ENST00000689978.1:ENST00000687534.1:ENST00000647855.1:ENST00000472361.5:ENST00000689458.1:ENST00000352103.6	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript:transcribed_unprocessed_pseudogene	3	44	2	2.21677	2.4347250000000003	2.65268	0.0207026	0.0201975	0.121243	0.110999
chr20	47331758	47331858	7349262	0	-	0.54	(0.515,0.57]	chr20	749346	128	INTRON	INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000435836.5:ENST00000446894.5:ENST00000441977.1	protein_coding	protein_coding	protein_coding	protein_coding	4	45	2	1.811	2.434695	3.05839	0.0325989	0.00485936	0.133687	0.0640618
chr22	20047869	20047969	7478014	0	+	0.38	(0.378,0.408]	chr22	762646	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	TANGO2	ENSG00000183597.16	ENST00000401886.5:ENST00000471707.5:ENST00000432198.5:ENST00000475446.5:ENST00000420290.6:ENST00000432883.5:ENST00000434570.6:ENST00000447208.6:ENST00000456048.5:ENST00000411907.5:ENST00000398042.6:ENST00000399807.7:ENST00000450664.5:ENST00000450019.5:ENST00000327374.9:ENST00000479679.5:ENST00000430807.5:ENST00000401833.5:ENST00000434168.5:ENST00000444651.5:ENST00000462579.5:ENST00000485715.2:ENST00000484373.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	54	2	1.72045	2.434685	3.14892	0.0424671	0.00499984	0.161763	0.0617433
chr2	273438	273532	685527	0	+	0.457447	(0.44,0.476]	chr2	80425	4	INTRON	INTRON	ACP1	ENSG00000143727.16	ENST00000272067.10:ENST00000413140.5:ENST00000442386.5:ENST00000405364.2:ENST00000480874.5:ENST00000272065.10:ENST00000453390.5:ENST00000484464.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	59	2	2.27304	2.43468	2.59632	0.0158915	0.00579248	0.109464	0.0662959
chr7	151510821	151510921	3674835	0	-	0.51	(0.476,0.515]	chr7	341207	123	INTRON	INTRON	RHEB	ENSG00000106615.10	ENST00000262187.10:ENST00000472642.5:ENST00000478470.5:ENST00000496004.5:ENST00000470370.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	88	2	1.72573	2.43468	3.14363	0.0196488	4.25082e-4	0.109608	0.018441
chr2	177217604	177217704	925969	0	+	0.36	(0.35,0.378]	chr2	101754	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	HNRNPA3	ENSG00000170144.21	ENST00000392524.6:ENST00000679159.1:ENST00000678111.1:ENST00000678421.1:ENST00000677863.1:ENST00000676681.1:ENST00000676629.1:ENST00000677337.1:ENST00000676488.1:ENST00000677043.1:ENST00000676874.1:ENST00000676762.1:ENST00000411529.6:ENST00000676736.1:ENST00000483137.2:ENST00000677508.1:ENST00000435711.5:ENST00000679328.1:ENST00000432457.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	102	2	1.51819	2.434655	3.35112	0.0372715	2.67918e-4	0.155878	0.0149998
chr18	9176392	9176492	6869327	0	+	0.5	(0.476,0.515]	chr18	680561	382	INTRON	INTRON	ANKRD12	ENSG00000101745.17	ENST00000585234.5:ENST00000262126.9:ENST00000577992.1:ENST00000540578.6:ENST00000581635.5:ENST00000400020.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	69	2	2.41328	2.43463	2.45598	0.00945755	0.00355364	0.0817766	0.0547657
chr18	9592973	9593071	6946098	0	-	0.285714	(0.28,0.32]	chr18	687020	38	INTRON	INTRON	PPP4R1	ENSG00000154845.16	ENST00000400555.7:ENST00000400556.8:ENST00000285124.12:ENST00000580583.5:ENST00000578875.5:ENST00000578178.5:ENST00000583903.5:ENST00000579638.5:ENST00000584074.5:ENST00000579415.5:ENST00000581250.5:ENST00000580745.5:ENST00000582933.5:ENST00000580182.5:ENST00000582240.5:ENST00000581835.1:ENST00000583092.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	54	2	2.1895	2.4346249999999996	2.67975	0.0252505	0.0227063	0.124921	0.12011
chr17	37153205	37153304	6760445	0	-	0.313131	(0.28,0.32]	chr17	664690	14	INTRON	INTRON	ACACA	ENSG00000278540.5	ENST00000616317.5:ENST00000614428.4:ENST00000612895.4:ENST00000619546.4:ENST00000617649.4:ENST00000614482.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	41	2	2.29724	2.434595	2.57195	0.0554156	0.0331711	0.18407	0.133994
chr5	177045231	177045331	2553161	0	+	0.32	(0.28,0.32]	chr5	243788	3	INTRON	INTRON	ZNF346	ENSG00000113761.12	ENST00000512315.5:ENST00000358149.8:ENST00000506693.5:ENST00000503425.5:ENST00000508155.5:ENST00000511834.5:ENST00000503039.1:ENST00000513587.5:ENST00000504600.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	41	2	2.29724	2.434595	2.57195	0.0554156	0.0331711	0.18407	0.133994
chr7	1110760	1110860	3461568	0	-	0.29	(0.28,0.32]	chr7	323589	9	INTRON	INTRON	C7orf50	ENSG00000146540.15	ENST00000357429.10:ENST00000397100.6:ENST00000397098.8:ENST00000488073.1:ENST00000491163.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	41	2	2.29724	2.434595	2.57195	0.0554156	0.0331711	0.18407	0.133994
chr10	5777441	5777541	4544555	0	-	0.41	(0.408,0.44]	chr10	419772	31	INTRON	INTRON	GDI2	ENSG00000057608.17	ENST00000380191.9:ENST00000447751.5:ENST00000380181.7:ENST00000456041.5	protein_coding	protein_coding	protein_coding	protein_coding	6	84	2	2.19524	2.43458	2.67392	0.00990486	0.00106946	0.0838372	0.0300133
chr6	111262329	111262403	2939803	0	+	0.445946	(0.44,0.476]	chr6	276902	2	CDS	CDS:UTR5:EXON_MRNA:INTRON	MFSD4B	ENSG00000173214.7	ENST00000672303.1:ENST00000671876.2:ENST00000672750.1:ENST00000672191.1:ENST00000368847.5:ENST00000672554.1:ENST00000673024.1:ENST00000671883.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	43	2	2.33272	2.4345600000000003	2.5364	0.0309324	0.0129984	0.13151	0.0991656
chr22	19805567	19805666	7555130	0	-	0.555556	(0.515,0.57]	chr22	772419	30	INTRON	INTRON	GNB1L	ENSG00000185838.14	ENST00000329517.11:ENST00000403325.5:ENST00000405009.5:ENST00000460402.5:ENST00000481086.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	37	2	2.26012	2.434555	2.60899	0.0232669	0.0160033	0.118148	0.109464
chr3	197991275	197991375	1599128	0	+	0.53	(0.515,0.57]	chr3	165777	2	INTRON	INTRON	LMLN	ENSG00000185621.11	ENST00000330198.8:ENST00000482695.5:ENST00000420910.7:ENST00000451139.6:ENST00000332636.5:ENST00000473676.5:ENST00000472063.5:ENST00000476356.5:ENST00000480813.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	37	2	2.26012	2.434555	2.60899	0.0232669	0.0160033	0.118148	0.109464
chr12	132801266	132801366	5449934	0	-	0.6	(0.57,1]	chr12	522064	1	SS5_PROX	SS5_PROX:INTRON	GOLGA3	ENSG00000090615.16	ENST00000204726.9:ENST00000450791.8:ENST00000693666.1:ENST00000688114.1:ENST00000687190.1:ENST00000690511.1:ENST00000685283.1:ENST00000691696.1:ENST00000691636.1:ENST00000690897.1:ENST00000690465.1:ENST00000456883.7:ENST00000692253.1:ENST00000687502.1:ENST00000688772.1:ENST00000687479.1:ENST00000690709.1:ENST00000545875.4:ENST00000688251.1:ENST00000690573.1:ENST00000685195.1:ENST00000686425.1:ENST00000693437.1:ENST00000692831.1:ENST00000688068.1:ENST00000692951.1:ENST00000689441.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	52	2	2.09207	2.43454	2.77701	0.0121228	1.54125e-4	0.090965	0.0106835
chr7	135466402	135466502	3648524	0	-	0.42	(0.408,0.44]	chr7	339187	276	INTRON	INTRON	CNOT4	ENSG00000080802.20	ENST00000541284.6:ENST00000451834.5:ENST00000423368.6:ENST00000361528.8:ENST00000428680.6:ENST00000315544.6:ENST00000491203.5:ENST00000498534.5:ENST00000465721.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	34	471	2	2.32912	2.4345350000000003	2.53995	7.83333e-5	2.21452e-5	0.00737894	0.00383852
chr3	38242142	38242242	1399331	0	+	0.39	(0.378,0.408]	chr3	146729	48	INTRON	INTRON	OXSR1	ENSG00000172939.9	ENST00000446845.5:ENST00000311806.8:ENST00000467900.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	68	2	1.58985	2.434535	3.27922	0.0290335	0.00312717	0.141186	0.0499153
chr2	11332603	11332703	1068557	0	-	0.36	(0.35,0.378]	chr2	114093	445	INTRON	INTRON	ROCK2	ENSG00000134318.15	ENST00000315872.11:ENST00000261535.7:ENST00000462366.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	47	2	1.81767	2.4345149999999998	3.05136	0.0640429	0.00578894	0.177882	0.0684334
chr9	124742841	124742941	4348931	0	-	0.37	(0.35,0.378]	chr9	399261	91	INTRON	INTRON	NR6A1	ENSG00000148200.17	ENST00000487099.7:ENST00000373584.7:ENST00000416460.6:ENST00000344523.8	protein_coding	protein_coding	protein_coding	protein_coding	3	47	2	1.81767	2.4345149999999998	3.05136	0.0640429	0.00578894	0.177882	0.0684334
chr2	151412434	151412533	893230	0	+	0.494949	(0.476,0.515]	chr2	98878	7	INTRON	INTRON	RIF1	ENSG00000080345.18	ENST00000453091.6:ENST00000428287.6:ENST00000494333.1:ENST00000444746.7:ENST00000243326.9:ENST00000414861.6:ENST00000430328.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	134	2	2.33443	2.4345049999999997	2.53458	0.00160781	4.37058e-4	0.0365246	0.0188334
chr22	49604955	49605055	7602130	0	-	0.31	(0.28,0.32]	chr22	778570	93	INTRON	INTRON	MIR3667HG	ENSG00000188511.13	ENST00000414287.5:ENST00000416411.1:ENST00000689875.1	lncRNA	lncRNA	lncRNA	lncRNA	4	66	2	1.60343	2.43447	3.26551	0.0669889	0.0030714	0.183051	0.0509893
chr1	956473	956554	358404	0	-	0.530864	(0.515,0.57]	chr1	41296	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NOC2L	ENSG00000188976.11	ENST00000327044.7:ENST00000477976.5:ENST00000487214.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	37	2	2.03361	2.43431	2.83501	0.0325854	0.0117686	0.145164	0.0894475
chr6	7175654	7175754	2799044	0	+	0.53	(0.515,0.57]	chr6	263733	345	INTRON	INTRON	RREB1	ENSG00000124782.21	ENST00000379933.7:ENST00000491191.5:ENST00000471433.5:ENST00000379938.7:ENST00000467782.5:ENST00000349384.10:ENST00000334984.10:ENST00000475946.5:ENST00000483150.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	37	2	2.03361	2.43431	2.83501	0.0325854	0.0117686	0.145164	0.0894475
chr7	130109067	130109167	3413981	0	+	0.53	(0.515,0.57]	chr7	319110	117	INTRON	INTRON	KLHDC10	ENSG00000128607.14	ENST00000335420.10:ENST00000463413.1:ENST00000468226.1	protein_coding	protein_coding	protein_coding	protein_coding	3	37	2	2.03361	2.43431	2.83501	0.0325854	0.0117686	0.145164	0.0894475
chr6	31757606	31757699	2843673	0	+	0.387097	(0.378,0.408]	chr6	267823	3	EXON_LNCRNA	EXON_LNCRNA:SS3_PROX:INTRON	MSH5:MSH5-SAPCD1	ENSG00000204410.16:ENSG00000255152.8	ENST00000375755.8:ENST00000375750.9:ENST00000650702.1:ENST00000493662.6:ENST00000375703.7:ENST00000375740.7:ENST00000423982.6:ENST00000463144.5:ENST00000450148.5:ENST00000468602.5:ENST00000468136.5:ENST00000395853.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	43	564	2	2.03479	2.434285	2.83378	3.58802e-4	1.92273e-6	0.0175484	8.42956e-4
chr9	92285421	92285521	4287261	0	-	0.37	(0.35,0.378]	chr9	394246	3	SS5_PROX	SS5_PROX:INTRON	IARS1	ENSG00000196305.19	ENST00000375643.7:ENST00000443024.7:ENST00000447699.7:ENST00000683537.1:ENST00000684726.1:ENST00000683192.1:ENST00000683565.1:ENST00000682756.1:ENST00000684542.1:ENST00000683793.1:ENST00000683817.1:ENST00000682141.1:ENST00000682893.1:ENST00000684557.1:ENST00000498025.2:ENST00000682156.1:ENST00000627121.3:ENST00000683469.1:ENST00000683495.1:ENST00000682578.1:ENST00000682533.1:ENST00000472894.2:ENST00000684757.1:ENST00000684445.1:ENST00000683376.1:ENST00000683679.1:ENST00000683119.1:ENST00000490438.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	56	2	1.92704	2.434075	2.94111	0.0228255	0.0104563	0.125469	0.0855102
chr16	4827892	4827992	6438822	0	-	0.37	(0.35,0.378]	chr16	620189	36	INTRON	INTRON	GLYR1	ENSG00000140632.17	ENST00000321919.14:ENST00000436648.9:ENST00000588732.5:ENST00000589389.5:ENST00000591451.5:ENST00000588297.5:ENST00000587297.1:ENST00000586901.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	35	2	2.39746	2.434055	2.47065	0.041314	0.0386172	0.161534	0.142656
chr17	43244755	43244855	6776635	0	-	0.46	(0.44,0.476]	chr17	667944	109	INTRON	INTRON	CCDC200	ENSG00000236383.9	ENST00000594691.6:ENST00000615433.2	protein_coding	protein_coding	protein_coding	protein_coding	5	73	2	2.39003	2.4340349999999997	2.47804	0.0106488	0.00325838	0.0915714	0.0508595
chr1	38841784	38841882	427302	0	-	0.418367	(0.408,0.44]	chr1	51818	17	INTRON	INTRON	RRAGC	ENSG00000116954.8	ENST00000373001.4:ENST00000474456.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	55	2	2.42808	2.43398	2.43988	0.0398236	0.00331055	0.143072	0.0527031
chr16	15700218	15700309	6307400	0	+	0.483516	(0.476,0.515]	chr16	603479	5	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	NDE1	ENSG00000072864.16	ENST00000396355.5:ENST00000674888.1:ENST00000675171.1:ENST00000675951.1:ENST00000674900.1:ENST00000674588.1:ENST00000674538.1:ENST00000396354.6:ENST00000675926.1:ENST00000674995.1:ENST00000674554.1:ENST00000674581.1:ENST00000577101.6:ENST00000572756.6:ENST00000573694.5:ENST00000576502.5:ENST00000572967.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	69	2	2.01618	2.4339750000000002	2.85177	0.0180082	0.00169916	0.106756	0.0381936
chr1	54046286	54046382	461523	0	-	0.3125	(0.28,0.32]	chr1	55608	1	INTRON	INTRON	TMEM59	ENSG00000116209.12	ENST00000234831.10:ENST00000371348.5:ENST00000371341.5:ENST00000440019.5:ENST00000420738.5:ENST00000452421.5:ENST00000371337.3	protein_coding	protein_coding	protein_coding	protein_coding	4	74	2	2.05458	2.43396	2.81334	0.0381508	0.00248627	0.141764	0.0461207
chr4	110156682	110156782	2227315	0	-	0.36	(0.35,0.378]	chr4	218024	507	INTRON	INTRON	ELOVL6	ENSG00000170522.10	ENST00000394607.7:ENST00000302274.8:ENST00000514184.5:ENST00000506625.5:ENST00000506461.1:ENST00000503885.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	76	2	2.06612	2.433955	2.80179	0.0164908	0.00223906	0.102419	0.0435144
chr5	69172751	69172851	2380035	0	+	0.42	(0.408,0.44]	chr5	229163	9	INTRON	INTRON	CCNB1	ENSG00000134057.15	ENST00000506572.5:ENST00000256442.10:ENST00000508407.5:ENST00000505500.5:ENST00000503507.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	153	2	2.2016	2.433955	2.66631	7.06982e-4	6.35449e-4	0.0241881	0.0231636
chr4	65742	65842	1905414	0	+	0.53	(0.515,0.57]	chr4	191003	52	INTRON	INTRON	ZNF595	ENSG00000272602.6	ENST00000608255.2:ENST00000609518.5:ENST00000509152.3:ENST00000610261.6	protein_coding	protein_coding	protein_coding	protein_coding	9	89	2	1.55764	2.43392	3.3102	0.0183076	1.88344e-4	0.11576	0.012549
chr10	68734475	68734575	4442398	0	+	0.42	(0.408,0.44]	chr10	409595	115	INTRON	INTRON	CCAR1	ENSG00000060339.14	ENST00000536391.5:ENST00000630771.2:ENST00000538031.5:ENST00000543719.5:ENST00000541012.5:ENST00000265872.11:ENST00000539539.5:ENST00000543229.5:ENST00000536012.5:ENST00000543225.5:ENST00000494903.2:ENST00000540210.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	70	2	2.08486	2.433875	2.78289	0.0145898	0.0022785	0.0981689	0.0437013
chr4	143194519	143194619	2053765	0	+	0.58	(0.57,1]	chr4	203658	62	INTRON	INTRON	USP38	ENSG00000170185.11	ENST00000307017.9:ENST00000510377.5:ENST00000683224.1:ENST00000682469.1:ENST00000684586.1:ENST00000511739.1:ENST00000684346.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	28	2	1.63919	2.433875	3.22856	0.05421	0.00205928	0.164887	0.0420839
chr19	2183554	2183654	6996366	0	+	0.46	(0.44,0.476]	chr19	693423	24	INTRON	INTRON	DOT1L	ENSG00000104885.19	ENST00000398665.8:ENST00000686010.1:ENST00000452696.5:ENST00000478937.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	52	2	1.55662	2.43386	3.3111	0.0688347	0.0020006	0.184298	0.0412555
chr4	39833833	39833932	2130721	0	-	0.393939	(0.378,0.408]	chr4	210063	80	INTRON	INTRON	PDS5A	ENSG00000121892.15	ENST00000303538.13	protein_coding	protein_coding	protein_coding	protein_coding	7	75	2	1.674	2.43384	3.19368	0.0159536	0.00426861	0.109464	0.0573912
chr9	92228500	92228593	4286649	0	-	0.430108	(0.408,0.44]	chr9	394099	1	SS5_PROX	SS5_PROX:INTRON	IARS1	ENSG00000196305.19	ENST00000375643.7:ENST00000443024.7:ENST00000447699.7:ENST00000683537.1:ENST00000684726.1:ENST00000683192.1:ENST00000683565.1:ENST00000682756.1:ENST00000684542.1:ENST00000683793.1:ENST00000683817.1:ENST00000682141.1:ENST00000682893.1:ENST00000684557.1:ENST00000498025.2:ENST00000682156.1:ENST00000683017.1:ENST00000682521.1:ENST00000627121.3:ENST00000683469.1:ENST00000683495.1:ENST00000682578.1:ENST00000682533.1:ENST00000472894.2:ENST00000684757.1:ENST00000684445.1:ENST00000683376.1:ENST00000683679.1:ENST00000683119.1:ENST00000684594.1:ENST00000684267.1:ENST00000683477.1:ENST00000684232.1:ENST00000684101.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	60	2	1.96973	2.43384	2.89795	0.0110735	0.0108773	0.0923273	0.0873897
chr6	149781461	149781561	2996362	0	+	0.53	(0.515,0.57]	chr6	280374	79	INTRON	INTRON	PCMT1	ENSG00000120265.19	ENST00000367384.7:ENST00000367378.6:ENST00000484601.6:ENST00000367380.9:ENST00000544496.5:ENST00000649295.1:ENST00000494411.6:ENST00000464889.7:ENST00000486585.2:ENST00000495487.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	50	2	2.08547	2.433775	2.78208	0.0289426	0.00209264	0.1274	0.0424943
chr9	5965231	5965331	4232556	0	-	0.32	(0.28,0.32]	chr9	389080	108	INTRON	INTRON	KIAA2026	ENSG00000183354.12	ENST00000399933.8:ENST00000381461.6:ENST00000540714.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	54	2	2.24061	2.4337350000000004	2.62686	0.0289217	0.0194267	0.1274	0.119831
chr1	10509658	10509757	23324	0	+	0.292929	(0.28,0.32]	chr1	2503	140	INTRON	INTRON	PEX14	ENSG00000142655.13	ENST00000472851.1:ENST00000356607.9:ENST00000491661.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	40	2	2.2609	2.4337299999999997	2.60656	0.0671429	0.0256827	0.183051	0.133676
chr10	63481665	63481765	4635550	0	-	0.31	(0.28,0.32]	chr10	426242	158	INTRON	INTRON	JMJD1C	ENSG00000171988.20	ENST00000633035.1	protein_coding	processed_transcript	protein_coding	processed_transcript	2	40	2	2.2609	2.4337299999999997	2.60656	0.0671429	0.0256827	0.183051	0.133676
chr10	77910972	77911071	4654636	0	-	0.30303	(0.28,0.32]	chr10	428774	216	INTRON	INTRON	DLG5	ENSG00000151208.17	ENST00000372391.7	protein_coding	protein_coding	protein_coding	protein_coding	2	40	2	2.2609	2.4337299999999997	2.60656	0.0671429	0.0256827	0.183051	0.133676
chr20	34416716	34416816	7259653	0	+	0.29	(0.28,0.32]	chr20	737445	2	SS3_PROX	SS3_PROX:INTRON	ITCH	ENSG00000078747.16	ENST00000374864.10:ENST00000535650.7:ENST00000670516.1:ENST00000658310.1:ENST00000665484.1:ENST00000664852.1:ENST00000660337.1:ENST00000665428.1:ENST00000262650.10:ENST00000662871.1:ENST00000665346.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	40	2	2.2609	2.4337299999999997	2.60656	0.0671429	0.0256827	0.183051	0.133676
chr5	112731704	112731804	2451822	0	+	0.3	(0.28,0.32]	chr5	234903	235	INTRON	INTRON	APC	ENSG00000134982.17	ENST00000509732.5:ENST00000505350.1:ENST00000507379.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	40	2	2.2609	2.4337299999999997	2.60656	0.0671429	0.0256827	0.183051	0.133676
chr7	75656095	75656195	3560422	0	-	0.29	(0.28,0.32]	chr7	331784	10	INTRON	INTRON	HIP1	ENSG00000127946.17	ENST00000336926.11:ENST00000434438.6:ENST00000485723.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	40	2	2.2609	2.4337299999999997	2.60656	0.0671429	0.0256827	0.183051	0.133676
chr22	20950527	20950625	7480850	0	+	0.530612	(0.515,0.57]	chr22	763101	8	UTR3	UTR3:EXON_MRNA:INTRON	CRKL	ENSG00000099942.13	ENST00000354336.8:ENST00000411769.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	22	248	2	2.34495	2.433725	2.5225	9.79824e-5	4.62855e-5	0.00832734	0.00589566
chr7	98901707	98901805	3359495	0	+	0.510204	(0.476,0.515]	chr7	313416	6	INTRON	INTRON	TRRAP	ENSG00000196367.14	ENST00000355540.7:ENST00000359863.8:ENST00000628380.2:ENST00000456197.2:ENST00000446306.7	protein_coding	protein_coding	protein_coding	protein_coding	3	45	2	2.23335	2.433655	2.63396	0.0634557	0.00426634	0.177047	0.0596808
chr2	144466235	144466334	1241264	0	-	0.30303	(0.28,0.32]	chr2	131716	15	INTRON	INTRON	ZEB2	ENSG00000169554.23	ENST00000636471.1:ENST00000627532.3:ENST00000638128.1:ENST00000637304.1:ENST00000636179.1:ENST00000636820.1:ENST00000419938.5:ENST00000409487.7:ENST00000636732.2:ENST00000636026.2:ENST00000675069.1:ENST00000689298.1:ENST00000539609.7:ENST00000558170.6:ENST00000303660.8:ENST00000427902.5:ENST00000637267.2:ENST00000392861.6:ENST00000431672.4:ENST00000409211.5:ENST00000465308.5:ENST00000434448.5:ENST00000472146.5:ENST00000461784.3:ENST00000476394.5:ENST00000637591.2:ENST00000479735.1:ENST00000453352.5:ENST00000435831.5:ENST00000444559.5:ENST00000630572.2:ENST00000484313.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	54	2	2.13651	2.43364	2.73077	0.0265696	0.0220748	0.134088	0.115395
chr10	69195476	69195572	4445228	0	+	0.25	[0,0.28]	chr10	410115	2	SS5_PROX	SS5_PROX:INTRON	SUPV3L1	ENSG00000156502.14	ENST00000359655.9:ENST00000422378.1:ENST00000478227.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	62	2	2.3719	2.433585	2.49527	0.0436497	0.0139689	0.14882	0.10247
chr19	58568449	58568543	7218588	0	-	0.319149	(0.28,0.32]	chr19	733430	4	EXON_MRNA	EXON_MRNA:INTRON	MZF1	ENSG00000099326.9	ENST00000215057.7:ENST00000594234.5:ENST00000599369.5:ENST00000595245.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	142	2	2.38564	2.433585	2.48153	0.00231789	0.00230684	0.0440898	0.0430358
chr7	149552019	149552113	3671893	0	-	0.255319	[0,0.28]	chr7	340815	2	SS3_PROX	SS3_PROX:INTRON	ZNF767P	ENSG00000133624.14	ENST00000463567.5:ENST00000472212.5:ENST00000684939.1:ENST00000690388.1:ENST00000486492.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	3	62	2	2.3719	2.433585	2.49527	0.0436497	0.0139689	0.14882	0.10247
chr3	182973808	182973908	1879867	0	-	0.22	[0,0.28]	chr3	187821	77	INTRON	INTRON	DCUN1D1	ENSG00000043093.15	ENST00000292782.9:ENST00000632685.1:ENST00000460412.6:ENST00000469954.5:ENST00000492563.1:ENST00000497606.5:ENST00000487822.5:ENST00000466812.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	84	2	2.30641	2.43357	2.56073	0.0213596	0.00743095	0.113755	0.0772645
chr18	32101970	32102070	6887360	0	+	0.5	(0.476,0.515]	chr18	682655	87	INTRON	INTRON	RNF138	ENSG00000134758.14	ENST00000261593.8:ENST00000585103.5:ENST00000578914.1:ENST00000580519.1:ENST00000578107.5:ENST00000583733.1:ENST00000257190.9:ENST00000580499.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	79	2	1.82595	2.43346	3.04097	0.0202339	7.0601e-4	0.109955	0.0241881
chr17	40168535	40168633	6609419	0	+	0.438776	(0.408,0.44]	chr17	643711	2	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	CASC3	ENSG00000108349.17	ENST00000264645.12:ENST00000583902.1:ENST00000394114.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	86	2	1.66653	2.4334350000000002	3.20034	0.00989468	0.00398025	0.0877296	0.0549214
chr21	10339724	10339818	7427418	0	-	0.319149	(0.28,0.32]	chr21	757675	8	INTRON	INTRON	ENSG00000277693	ENSG00000277693.2	ENST00000622592.1:ENST00000616952.1:ENST00000667012.1	lncRNA	lncRNA	lncRNA	lncRNA	7	113	2	1.87474	2.4334	2.99206	0.0115687	0.0017801	0.0962115	0.0379201
chr1	31292106	31292206	413244	0	-	0.52	(0.515,0.57]	chr1	49808	1	SS3_PROX	SS3_PROX:INTRON	SNRNP40	ENSG00000060688.13	ENST00000263694.9	protein_coding	protein_coding	protein_coding	protein_coding	6	73	2	2.41082	2.433335	2.45585	0.00797827	0.00167359	0.0798772	0.0370386
chr1	19418062	19418162	388231	0	-	0.42	(0.408,0.44]	chr1	46378	5	INTRON	INTRON	CAPZB	ENSG00000077549.19	ENST00000264202.8:ENST00000264203.7:ENST00000375142.5:ENST00000482808.2:ENST00000674449.1:ENST00000674390.1:ENST00000375144.6:ENST00000674432.1:ENST00000433834.5:ENST00000674228.1:ENST00000459967.6:ENST00000489607.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	43	2	2.21238	2.43329	2.6542	0.0227514	0.0193525	0.119831	0.117618
chr1	226179792	226179892	646989	0	-	0.45	(0.44,0.476]	chr1	76667	134	INTRON	INTRON	ACBD3	ENSG00000182827.9	ENST00000366812.6	protein_coding	protein_coding	protein_coding	protein_coding	7	88	2	2.08604	2.43325	2.78046	0.00407817	0.0028389	0.0580928	0.0473151
chr2	15515248	15515348	1072701	0	-	0.37	(0.35,0.378]	chr2	114441	35	INTRON	INTRON	NBAS	ENSG00000151779.13	ENST00000281513.10	protein_coding	protein_coding	protein_coding	protein_coding	3	47	2	2.39583	2.43324	2.47065	0.0386172	0.0107976	0.142656	0.0920575
chr20	31759359	31759457	7253863	0	+	0.367347	(0.35,0.378]	chr20	736739	14	INTRON	INTRON	TPX2	ENSG00000088325.16	ENST00000340513.4:ENST00000300403.11	protein_coding	protein_coding	protein_coding	protein_coding	3	47	2	2.39583	2.43324	2.47065	0.0386172	0.0107976	0.142656	0.0920575
chr14	91509005	91509105	5956169	0	-	0.34	(0.32,0.35]	chr14	565484	1	SS5_PROX	SS5_PROX:INTRON	PPP4R3A	ENSG00000100796.18	ENST00000554943.6:ENST00000554684.5:ENST00000555462.5:ENST00000554308.5:ENST00000554390.5:ENST00000555029.5:ENST00000557018.5:ENST00000554511.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:nonsense_mediated_decay	11	175	2	2.27791	2.433235	2.58856	0.00121437	6.96512e-4	0.032255	0.024224
chr19	19484508	19484608	7036141	0	+	0.43	(0.408,0.44]	chr19	701470	114	INTRON	INTRON	GATAD2A	ENSG00000167491.18	ENST00000360315.7:ENST00000609040.5:ENST00000417582.6:ENST00000683918.1:ENST00000432704.5:ENST00000404158.5:ENST00000429242.7:ENST00000358713.7:ENST00000444839.1:ENST00000418032.3:ENST00000473184.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	43	2	2.14732	2.433215	2.71911	0.0237354	0.0189489	0.129075	0.108861
chr1	246918577	246918677	681829	0	-	0.49	(0.476,0.515]	chr1	80042	2	SS3_PROX	SS3_PROX:INTRON	AHCTF1	ENSG00000153207.16	ENST00000648844.2:ENST00000326225.3:ENST00000366508.5	protein_coding	protein_coding	protein_coding	protein_coding	8	96	2	1.5371	2.43321	3.32932	0.028567	1.60666e-4	0.126677	0.0109124
chr17	50965171	50965271	6795403	0	-	0.35	(0.32,0.35]	chr17	670813	31	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	SPAG9	ENSG00000008294.22	ENST00000262013.12:ENST00000509724.1:ENST00000510283.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	77	2	1.787	2.433175	3.07935	0.0151818	0.00724137	0.108535	0.0729826
chr3	9990808	9990905	1362008	0	+	0.42268	(0.408,0.44]	chr3	143392	17	INTRON	INTRON	EMC3-AS1	ENSG00000180385.9	ENST00000692142.1:ENST00000366264.6:ENST00000693066.1:ENST00000326237.3:ENST00000440568.1:ENST00000438698.1:ENST00000424904.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	6	82	2	2.1269	2.433155	2.73941	0.00691204	0.002744	0.0718189	0.0484022
chr7	152659504	152659603	3681453	0	-	0.373737	(0.35,0.378]	chr7	341677	98	INTRON	INTRON	XRCC2	ENSG00000196584.3	ENST00000359321.2:ENST00000495707.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	56	2	1.87586	2.43315	2.99044	0.0268864	0.00894806	0.135275	0.0799922
chr4	150992319	150992418	2271542	0	-	0.393939	(0.378,0.408]	chr4	220921	629	INTRON	INTRON	LRBA	ENSG00000198589.14	ENST00000357115.9:ENST00000651943.2:ENST00000510413.5:ENST00000651035.1:ENST00000507224.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	60	2	2.16303	2.433005	2.70298	0.0252473	0.00325723	0.12011	0.0524329
chr7	32496401	32496501	3303242	0	+	0.38	(0.378,0.408]	chr7	306758	2	INTRON	INTRON	AVL9	ENSG00000105778.20	ENST00000485228.1:ENST00000318709.9:ENST00000459629.1:ENST00000409301.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	60	2	2.16303	2.433005	2.70298	0.0252473	0.00325723	0.12011	0.0524329
chr12	23249960	23250060	5286118	0	-	0.54	(0.515,0.57]	chr12	503634	670	INTRON	INTRON	ENSG00000115934	ENSG00000115934.11	ENST00000538297.1	lncRNA	lncRNA	lncRNA	lncRNA	4	51	2	2.1885	2.432915	2.67733	0.0202537	0.00366712	0.121364	0.0535094
chr18	46810846	46810945	6965647	0	-	0.343434	(0.32,0.35]	chr18	689435	78	UTR3	UTR3:EXON_MRNA	PIAS2	ENSG00000078043.16	ENST00000585916.6	protein_coding	protein_coding	protein_coding	protein_coding	3	50	2	2.01768	2.4329	2.84812	0.0361337	0.0147575	0.152563	0.0983813
chr12	69260397	69260497	5163723	0	+	0.43	(0.408,0.44]	chr12	489041	2	SS5_PROX	SS5_PROX:INTRON	CPSF6	ENSG00000111605.18	ENST00000435070.7:ENST00000650046.1:ENST00000456847.7:ENST00000266679.8:ENST00000551516.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	71	2	1.74108	2.43283	3.12458	0.0424099	4.61817e-4	0.148082	0.0194611
chr9	94404275	94404375	4162461	0	+	0.39	(0.378,0.408]	chr9	379485	290	INTRON	INTRON	MFSD14B	ENSG00000148110.17	ENST00000375344.8	protein_coding	protein_coding	protein_coding	protein_coding	5	62	2	1.39189	2.43283	3.47377	0.0751636	0.00103087	0.193731	0.0294094
chr16	75366622	75366722	6528620	0	-	0.35	(0.32,0.35]	chr16	632304	37	INTRON	INTRON	CFDP1	ENSG00000153774.9	ENST00000283882.4	protein_coding	protein_coding	protein_coding	protein_coding	3	52	2	2.22429	2.43279	2.64129	0.0226421	0.0222819	0.124303	0.117557
chr22	16635244	16635344	7473699	0	+	0.33	(0.32,0.35]	chr22	762000	120	INTRON	INTRON	TPTEP1	ENSG00000100181.22	ENST00000558085.6:ENST00000400593.6:ENST00000426585.5:ENST00000383140.7	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	3	52	2	2.22429	2.43279	2.64129	0.0226421	0.0222819	0.124303	0.117557
chr1	96787447	96787547	168609	0	+	0.29	(0.28,0.32]	chr1	18249	18	INTRON	INTRON	PTBP2	ENSG00000117569.19	ENST00000482253.5:ENST00000675735.1:ENST00000609116.5:ENST00000674951.1:ENST00000675080.1:ENST00000426398.3:ENST00000370197.5:ENST00000370198.5:ENST00000476419.5:ENST00000676292.1:ENST00000676096.1:ENST00000675365.1:ENST00000674579.1:ENST00000675401.1:ENST00000459735.5:ENST00000476783.5:ENST00000492905.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	102	2	1.96841	2.4327449999999997	2.89708	0.0124199	0.00257346	0.0973643	0.0451443
chr6	49609943	49610039	3105183	0	-	0.458333	(0.44,0.476]	chr6	290636	24	INTRON	INTRON	RHAG	ENSG00000112077.18	ENST00000371175.10:ENST00000646272.1:ENST00000646939.1:ENST00000646963.1	protein_coding	protein_coding	protein_coding	protein_coding	7	72	2	1.64357	2.4327449999999997	3.22192	0.0177224	0.00360821	0.11319	0.0533855
chr1	10566468	10566568	23897	0	+	0.38	(0.378,0.408]	chr1	2518	298	INTRON	INTRON	PEX14	ENSG00000142655.13	ENST00000356607.9:ENST00000491661.2	protein_coding	protein_coding	protein_coding	protein_coding	2	34	2	2.26252	2.43274	2.60296	0.056222	0.0267851	0.18407	0.123349
chr1	100960927	100961027	174992	0	+	0.39	(0.378,0.408]	chr1	18964	387	INTRON	INTRON	SLC30A7	ENSG00000162695.12	ENST00000370112.8:ENST00000357650.9	protein_coding	protein_coding	protein_coding	protein_coding	2	34	2	2.26252	2.43274	2.60296	0.056222	0.0267851	0.18407	0.123349
chr1	173998314	173998413	587804	0	-	0.383838	(0.378,0.408]	chr1	70758	48	INTRON	INTRON	RC3H1	ENSG00000135870.12	ENST00000367696.7	protein_coding	protein_coding	protein_coding	protein_coding	2	34	2	2.26252	2.43274	2.60296	0.056222	0.0267851	0.18407	0.123349
chr22	49791949	49792048	7602860	0	-	0.40404	(0.378,0.408]	chr22	778629	37	INTRON	INTRON	BRD1	ENSG00000100425.19	ENST00000404760.6:ENST00000404034.5:ENST00000216267.12:ENST00000438393.5:ENST00000457780.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	34	2	2.26252	2.43274	2.60296	0.056222	0.0267851	0.18407	0.123349
chr7	121393270	121393370	3630873	0	-	0.4	(0.378,0.408]	chr7	337397	99	INTRON	INTRON	FAM3C	ENSG00000196937.11	ENST00000359943.8:ENST00000412653.5:ENST00000426156.1	protein_coding	protein_coding	protein_coding	protein_coding	2	34	2	2.26252	2.43274	2.60296	0.056222	0.0267851	0.18407	0.123349
chr9	77911960	77912060	4270749	0	-	0.38	(0.378,0.408]	chr9	392874	958	INTRON	INTRON	GNAQ	ENSG00000156052.11	ENST00000286548.9:ENST00000411677.1	protein_coding	protein_coding	protein_coding	protein_coding	2	34	2	2.26252	2.43274	2.60296	0.056222	0.0267851	0.18407	0.123349
chr2	239974743	239974840	1345206	0	-	0.350515	(0.35,0.378]	chr2	141037	7	INTRON	INTRON	NDUFA10	ENSG00000130414.13	ENST00000419408.5:ENST00000679183.1:ENST00000677057.1:ENST00000676782.1:ENST00000677407.1:ENST00000676929.1:ENST00000678455.1:ENST00000252711.7:ENST00000677692.1:ENST00000476216.6:ENST00000677395.1:ENST00000678188.1:ENST00000677979.1:ENST00000678914.1:ENST00000678562.1:ENST00000678832.1:ENST00000677155.1:ENST00000677764.1:ENST00000677294.1:ENST00000678468.1:ENST00000677324.1:ENST00000678158.1:ENST00000676491.1:ENST00000471378.1:ENST00000677114.1:ENST00000404554.5:ENST00000620965.5:ENST00000485344.6:ENST00000679308.1:ENST00000677567.1:ENST00000679158.1:ENST00000443626.5:ENST00000444548.6:ENST00000448880.6:ENST00000677490.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	57	2	1.65083	2.432695	3.21456	0.0521072	0.00420814	0.177022	0.0572185
chr16	88876204	88876301	6540274	0	-	0.268041	[0,0.28]	chr16	634026	15	UTR3	UTR3:EXON_MRNA	CBFA2T3	ENSG00000129993.15	ENST00000268679.9:ENST00000327483.9:ENST00000563856.1:ENST00000563920.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	63	2	2.06132	2.43264	2.80396	0.0408268	0.0161429	0.1451	0.109464
chr17	58876778	58876878	6638853	0	+	0.56	(0.515,0.57]	chr17	648239	409	INTRON	INTRON	PPM1E	ENSG00000175175.6	ENST00000308249.4	protein_coding	protein_coding	protein_coding	protein_coding	6	71	2	2.29223	2.4326049999999997	2.57298	0.00506495	0.00290031	0.0646039	0.047789
chr3	37280663	37280762	1396130	0	+	0.272727	[0,0.28]	chr3	146333	42	INTRON	INTRON	GOLGA4	ENSG00000144674.17	ENST00000435830.6:ENST00000444882.5:ENST00000356847.8:ENST00000450863.6:ENST00000361924.7:ENST00000429018.5:ENST00000431105.1:ENST00000419177.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	142	2	2.07145	2.43254	2.79363	0.00466792	0.00429665	0.0600108	0.0599409
chr2	84979943	84980043	820351	0	+	0.44	(0.408,0.44]	chr2	91419	73	INTRON	INTRON	KCMF1	ENSG00000176407.18	ENST00000456682.1:ENST00000409785.9:ENST00000428691.5:ENST00000453448.1	protein_coding	protein_coding	protein_coding	protein_coding	4	52	2	2.08376	2.4324899999999996	2.78122	0.015812	0.0129886	0.101453	0.0991656
chr12	54237389	54237488	5330462	0	-	0.393939	(0.378,0.408]	chr12	508602	66	UTR3	UTR3:EXON_MRNA	CBX5	ENSG00000094916.16	ENST00000209875.9	protein_coding	protein_coding	protein_coding	protein_coding	10	91	2	1.35589	2.43248	3.50907	0.029051	0.00127828	0.141264	0.0326395
chr3	196054144	196054231	1897249	0	-	0.586207	(0.57,1]	chr3	189896	2	INTRON	INTRON	TFRC	ENSG00000072274.13	ENST00000426789.5:ENST00000420415.5:ENST00000360110.9:ENST00000392396.7:ENST00000463047.1:ENST00000475593.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	13	89	2	2.23129	2.4324399999999997	2.63359	5.96087e-4	7.53662e-5	0.0222158	0.00777227
chr15	43186433	43186533	6010998	0	+	0.34	(0.32,0.35]	chr15	572344	2	SS5_PROX	SS5_PROX:INTRON	CCNDBP1	ENSG00000166946.14	ENST00000564630.5:ENST00000566515.5:ENST00000300213.9:ENST00000569745.5:ENST00000563065.5:ENST00000567434.5:ENST00000565296.5:ENST00000568507.5:ENST00000566833.1:ENST00000562553.5:ENST00000567690.5:ENST00000444658.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	37	2	2.37794	2.432435	2.48693	0.0498601	0.0338094	0.156383	0.146709
chr2	165892776	165892875	1253328	0	-	0.343434	(0.32,0.35]	chr2	132820	19	UTR3	UTR3:EXON_MRNA:INTRON	TTC21B	ENSG00000123607.16	ENST00000680888.1:ENST00000680947.1:ENST00000681083.1:ENST00000681024.1:ENST00000680690.1:ENST00000679676.1:ENST00000679967.1:ENST00000679356.1:ENST00000680327.1:ENST00000681502.1:ENST00000681167.1:ENST00000681483.1:ENST00000680657.1:ENST00000679931.1:ENST00000681952.1:ENST00000652557.1:ENST00000679799.1:ENST00000681819.1:ENST00000243344.8:ENST00000680925.1:ENST00000679840.1:ENST00000680448.1:ENST00000681606.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	37	2	2.37794	2.432435	2.48693	0.0498601	0.0338094	0.156383	0.146709
chr2	232718037	232718137	1037446	0	+	0.35	(0.32,0.35]	chr2	110616	122	INTRON	INTRON	GIGYF2	ENSG00000204120.16	ENST00000476995.5:ENST00000629305.2:ENST00000427233.5:ENST00000428883.5:ENST00000409480.5:ENST00000456491.5:ENST00000484409.1:ENST00000492910.5:ENST00000373563.9:ENST00000409547.5:ENST00000430720.5:ENST00000425040.5:ENST00000421433.5:ENST00000475359.6:ENST00000490612.5:ENST00000464402.5:ENST00000488629.5:ENST00000423659.5:ENST00000409196.7:ENST00000488734.5:ENST00000409451.7:ENST00000463554.5:ENST00000440945.5:ENST00000429187.5:ENST00000482666.5:ENST00000490229.5:ENST00000483164.5:ENST00000464805.5:ENST00000489328.1:ENST00000424038.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	37	2	2.37794	2.432435	2.48693	0.0498601	0.0338094	0.156383	0.146709
chr8	140939880	140939980	4079461	0	-	0.35	(0.32,0.35]	chr8	370572	54	INTRON	INTRON	PTK2	ENSG00000169398.20	ENST00000696786.1:ENST00000522684.5:ENST00000395218.3:ENST00000521059.5:ENST00000519993.5:ENST00000340930.7:ENST00000519419.5:ENST00000524357.5:ENST00000521791.5:ENST00000523067.5:ENST00000520828.5:ENST00000519881.5:ENST00000520892.5:ENST00000523803.5:ENST00000521907.5:ENST00000517453.5:ENST00000520045.5:ENST00000521332.5:ENST00000524040.5:ENST00000523679.1:ENST00000524257.5:ENST00000523797.1:ENST00000519635.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	37	2	2.37794	2.432435	2.48693	0.0498601	0.0338094	0.156383	0.146709
chr1	8808734	8808833	373698	0	-	0.40404	(0.378,0.408]	chr1	43563	18	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000656437.1:ENST00000659924.1	protein_coding	protein_coding	protein_coding	protein_coding	5	72	2	2.2708	2.4322999999999997	2.5938	0.00646593	0.00614976	0.073179	0.0676501
chr6	35644642	35644742	3087077	0	-	0.39	(0.378,0.408]	chr6	288789	14	INTRON	INTRON	FKBP5	ENSG00000096060.15	ENST00000536438.5:ENST00000539068.5:ENST00000357266.9:ENST00000542713.1	protein_coding	protein_coding	protein_coding	protein_coding	5	72	2	2.2708	2.4322999999999997	2.5938	0.00646593	0.00614976	0.073179	0.0676501
chr12	51161315	51161415	5325757	0	-	0.41	(0.408,0.44]	chr12	507890	358	INTRON	INTRON	TFCP2	ENSG00000135457.11	ENST00000257915.10:ENST00000685804.1:ENST00000549867.5:ENST00000548115.5:ENST00000548108.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	80	2	1.84516	2.43229	3.01942	0.0193431	7.74413e-4	0.108861	0.0256083
chr1	160298149	160298245	571843	0	-	0.416667	(0.408,0.44]	chr1	69290	1	SS3_PROX	SS3_PROX:INTRON	COPA	ENSG00000122218.17	ENST00000241704.8:ENST00000696204.1:ENST00000696203.1:ENST00000696202.1:ENST00000649963.1:ENST00000696208.1:ENST00000696207.1:ENST00000696206.1:ENST00000649676.1:ENST00000368069.7:ENST00000647693.1:ENST00000649787.1:ENST00000650154.1:ENST00000647799.1:ENST00000648805.1:ENST00000647683.1:ENST00000649231.1:ENST00000648501.1:ENST00000696209.1:ENST00000696210.1:ENST00000696211.1:ENST00000545284.1:ENST00000647899.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	70	2	2.36185	2.4322749999999997	2.5027	0.0133164	0.00238178	0.094512	0.0449397
chrX	154740375	154740475	7915213	0	-	0.32	(0.28,0.32]	chrX	806107	237	INTRON	INTRON	GAB3	ENSG00000160219.12	ENST00000496390.5:ENST00000424127.3:ENST00000369575.7:ENST00000369568.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	55	2	1.90263	2.43225	2.96187	0.0503272	0.0114995	0.17488	0.0889104
chr12	57790001	57790099	5148783	0	+	0.295918	(0.28,0.32]	chr12	487192	25	INTRON	INTRON	TSFM	ENSG00000123297.20	ENST00000540550.6:ENST00000323833.12:ENST00000651899.1:ENST00000548851.5:ENST00000550559.5:ENST00000652027.2:ENST00000651066.1:ENST00000543727.5:ENST00000434359.5:ENST00000457189.1:ENST00000497617.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	75	2	1.90241	2.43214	2.96187	0.0157236	0.0114995	0.109464	0.0889104
chr14	91503833	91503932	5956117	0	-	0.282828	(0.28,0.32]	chr14	565483	127	INTRON	INTRON	PPP4R3A	ENSG00000100796.18	ENST00000554943.6:ENST00000554684.5:ENST00000555462.5:ENST00000554308.5:ENST00000554390.5:ENST00000555029.5:ENST00000557018.5:ENST00000554511.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:nonsense_mediated_decay	2	40	2	2.18975	2.43214	2.67453	0.0776042	0.021289	0.196285	0.123318
chr17	47084048	47084148	6788481	0	-	0.3	(0.28,0.32]	chr17	669501	13	INTRON	INTRON	ENSG00000262879	ENSG00000262879.6	ENST00000668245.1:ENST00000573341.6:ENST00000572864.5:ENST00000576938.1:ENST00000574741.1	lncRNA	lncRNA	lncRNA	lncRNA	2	40	2	2.18975	2.43214	2.67453	0.0776042	0.021289	0.196285	0.123318
chr2	69846748	69846846	804925	0	+	0.306122	(0.28,0.32]	chr2	89817	22	INTRON	INTRON	GMCL1	ENSG00000087338.5	ENST00000282570.4:ENST00000471404.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	40	2	2.18975	2.43214	2.67453	0.0776042	0.021289	0.196285	0.123318
chr2	97239965	97240065	832164	0	+	0.29	(0.28,0.32]	chr2	93233	57	INTRON	INTRON	ANKRD36	ENSG00000135976.21	ENST00000420699.9:ENST00000652721.1:ENST00000461153.7:ENST00000421946.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	40	2	2.18975	2.43214	2.67453	0.0776042	0.021289	0.196285	0.123318
chr3	107568049	107568149	1470198	0	+	0.32	(0.28,0.32]	chr3	154137	413	INTRON	INTRON	BBX	ENSG00000114439.19	ENST00000415149.6:ENST00000402543.5:ENST00000325805.13:ENST00000485939.5:ENST00000427402.5:ENST00000416476.6:ENST00000454540.5:ENST00000449335.5:ENST00000431630.5:ENST00000458458.5:ENST00000456817.5:ENST00000456419.5:ENST00000402163.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	40	2	2.18975	2.43214	2.67453	0.0776042	0.021289	0.196285	0.123318
chr9	33006223	33006323	4242827	0	-	0.32	(0.28,0.32]	chr9	390001	47	INTRON	INTRON	APTX	ENSG00000137074.20	ENST00000673360.1:ENST00000436040.7:ENST00000673487.1:ENST00000467331.6:ENST00000482687.6:ENST00000485479.6:ENST00000460940.6:ENST00000673248.1:ENST00000495360.6:ENST00000672281.1:ENST00000468275.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	40	2	2.18975	2.43214	2.67453	0.0776042	0.021289	0.196285	0.123318
chrX	74199015	74199114	7840657	0	-	0.313131	(0.28,0.32]	chrX	799688	28	EXON_LNCRNA	EXON_LNCRNA:INTRON	FTX	ENSG00000230590.12	ENST00000603672.5:ENST00000430772.6:ENST00000602776.6:ENST00000638681.1:ENST00000652319.1:ENST00000661133.1:ENST00000652071.1:ENST00000602812.6:ENST00000651703.1:ENST00000653018.1:ENST00000658448.1:ENST00000662240.1:ENST00000652527.1:ENST00000651451.1:ENST00000657611.1:ENST00000660481.1:ENST00000659574.1:ENST00000661084.1:ENST00000662494.1:ENST00000670936.1:ENST00000602420.6:ENST00000658203.1:ENST00000638985.1:ENST00000691187.1:ENST00000603037.2	lncRNA	lncRNA	lncRNA	lncRNA	2	40	2	2.18975	2.43214	2.67453	0.0776042	0.021289	0.196285	0.123318
chr19	29947835	29947934	7047609	0	+	0.292929	(0.28,0.32]	chr19	702657	48	INTRON	INTRON	URI1	ENSG00000105176.18	ENST00000360605.8:ENST00000570564.5:ENST00000574233.5:ENST00000392271.6:ENST00000574110.5:ENST00000574666.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	40	2	2.32871	2.431965	2.53522	0.0581621	0.0310424	0.167723	0.143457
chr2	180866975	180867075	935328	0	+	0.32	(0.28,0.32]	chr2	102582	391	INTRON	INTRON	SCHLAP1	ENSG00000281131.1	ENST00000629145.1	lncRNA	lncRNA	lncRNA	lncRNA	2	40	2	2.32871	2.431965	2.53522	0.0581621	0.0310424	0.167723	0.143457
chr3	45730204	45730303	1417461	0	+	0.282828	(0.28,0.32]	chr3	148713	63	INTRON	INTRON	SACM1L	ENSG00000211456.13	ENST00000455997.5:ENST00000418611.5:ENST00000672477.1:ENST00000441228.5:ENST00000389061.10:ENST00000672858.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	40	2	2.32871	2.431965	2.53522	0.0581621	0.0310424	0.167723	0.143457
chr3	60502811	60502911	1714642	0	-	0.32	(0.28,0.32]	chr3	176138	4221	INTRON	INTRON	FHIT	ENSG00000189283.10	ENST00000492590.6:ENST00000476844.5:ENST00000468189.5:ENST00000488467.5	protein_coding	protein_coding	protein_coding	protein_coding	2	40	2	2.32871	2.431965	2.53522	0.0581621	0.0310424	0.167723	0.143457
chr6	157912804	157912903	3016671	0	+	0.292929	(0.28,0.32]	chr6	281411	24	INTRON	INTRON	SNX9	ENSG00000130340.17	ENST00000680863.1:ENST00000679814.1:ENST00000680464.1:ENST00000681186.1:ENST00000679732.1:ENST00000681183.1:ENST00000681534.1:ENST00000681651.1:ENST00000680089.1:ENST00000680078.1:ENST00000680974.1:ENST00000680095.1:ENST00000681138.1:ENST00000392185.8:ENST00000679790.1:ENST00000680495.1:ENST00000679691.1:ENST00000681881.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	40	2	2.32871	2.431965	2.53522	0.0581621	0.0310424	0.167723	0.143457
chr9	19096473	19096573	4236539	0	-	0.51	(0.476,0.515]	chr9	389430	4	SS5_PROX	SS5_PROX:INTRON	HAUS6	ENSG00000147874.11	ENST00000380502.8	protein_coding	protein_coding	protein_coding	protein_coding	6	66	2	1.36967	2.43189	3.49411	0.0605132	9.23453e-4	0.171085	0.0278392
chr16	96762	96860	6425336	0	-	0.408163	(0.378,0.408]	chr16	617328	31	INTRON	INTRON	NPRL3	ENSG00000103148.17	ENST00000611875.5:ENST00000622194.4:ENST00000621703.4:ENST00000399953.7:ENST00000464069.1:ENST00000473674.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	114	2	2.3978	2.43188	2.46596	0.00235448	0.00125753	0.0436213	0.03295
chr13	95138796	95138896	5638228	0	-	0.58	(0.57,1]	chr13	537056	224	INTRON	INTRON	ABCC4	ENSG00000125257.16	ENST00000645237.2:ENST00000643051.1:ENST00000643842.1:ENST00000646439.1:ENST00000644880.1:ENST00000643816.1:ENST00000536256.3:ENST00000643556.1:ENST00000629385.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	28	2	2.07956	2.431825	2.78409	0.013114	0.0116033	0.0998629	0.0889104
chr6	15379148	15379248	2824279	0	+	0.37	(0.35,0.378]	chr6	265198	45	INTRON	INTRON	JARID2	ENSG00000008083.14	ENST00000341776.7:ENST00000397311.4	protein_coding	protein_coding	protein_coding	protein_coding	6	87	2	1.71411	2.43179	3.14947	0.0310697	4.50721e-4	0.13151	0.0192381
chr16	8103222	8103322	6441541	0	-	0.31	(0.28,0.32]	chr16	620351	956	INTRON	INTRON	ENSG00000260289	ENSG00000260289.2	ENST00000670665.1:ENST00000654046.1:ENST00000567103.2	lncRNA	lncRNA	lncRNA	lncRNA	8	124	2	1.61606	2.4317450000000003	3.24743	0.0268974	3.55762e-4	0.123442	0.0168968
chr1	227250867	227250967	651043	0	-	0.47	(0.44,0.476]	chr1	77102	311	INTRON	INTRON	CDC42BPA	ENSG00000143776.20	ENST00000366766.8:ENST00000366769.7:ENST00000334218.9:ENST00000366767.7:ENST00000366764.8:ENST00000478573.6:ENST00000682551.1:ENST00000462553.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	58	2	2.39003	2.43171	2.47339	0.0106488	0.0090196	0.0915714	0.080367
chr21	9330143	9330241	7367432	0	+	0.469388	(0.44,0.476]	chr21	751920	25	INTRON	INTRON	ENSG00000278932	ENSG00000278932.5	ENST00000622961.3:ENST00000686553.1:ENST00000691955.1:ENST00000625153.3:ENST00000692626.1:ENST00000685951.1:ENST00000686510.1:ENST00000692884.1	lncRNA	lncRNA	lncRNA	lncRNA	5	69	2	2.30673	2.43161	2.55649	0.00670547	0.0055175	0.0707084	0.0672816
chr10	73095466	73095566	4647833	0	-	0.28	[0,0.28]	chr10	427557	130	INTRON	INTRON	P4HA1	ENSG00000122884.13	ENST00000394890.7:ENST00000307116.6:ENST00000373008.6:ENST00000440381.5:ENST00000263556.3	protein_coding	protein_coding	protein_coding	protein_coding	8	112	2	1.47018	2.4315949999999997	3.39301	0.032043	0.00353745	0.145026	0.0528929
chr19	1590794	1590893	7112505	0	-	0.656566	(0.57,1]	chr19	714541	46	INTRON	INTRON	MBD3:ENSG00000267059	ENSG00000071655.18:ENSG00000267059.2	ENST00000434436.8:ENST00000156825.5:ENST00000585937.1:ENST00000585967.5:ENST00000592965.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	58	2	2.161	2.4315949999999997	2.70219	0.00462668	2.46447e-4	0.062717	0.014504
chr16	58530757	58530847	6495330	0	-	0.277778	[0,0.28]	chr16	628416	2	SS3_PROX	SS3_PROX:INTRON	CNOT1	ENSG00000125107.19	ENST00000317147.10:ENST00000563130.5:ENST00000569240.5:ENST00000567188.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	62	2	1.812	2.4315700000000002	3.05114	0.0729149	0.0075493	0.189235	0.0773151
chr16	89591660	89591760	6421097	0	+	0.5	(0.476,0.515]	chr16	616406	4	SS5_PROX	SS5_PROX:INTRON	CPNE7	ENSG00000178773.15	ENST00000319518.13:ENST00000268720.9:ENST00000529800.5:ENST00000568977.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	147	2	1.78305	2.431365	3.07968	0.00766879	6.46383e-5	0.0780566	0.00711194
chr5	37319860	37319958	2602235	0	-	0.469388	(0.44,0.476]	chr5	247417	14	INTRON	INTRON	NUP155	ENSG00000113569.16	ENST00000231498.8:ENST00000381843.6:ENST00000513532.1	protein_coding	protein_coding	protein_coding	protein_coding	3	43	2	1.83899	2.431325	3.02366	0.0589734	0.00603307	0.167915	0.0700813
chr11	9389712	9389811	4729459	0	+	0.323232	(0.32,0.35]	chr11	437819	45	INTRON	INTRON	IPO7	ENSG00000205339.10	ENST00000379719.8:ENST00000533233.1:ENST00000527431.1:ENST00000630083.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	131	2	2.3585	2.431305	2.50411	0.00267989	0.00198682	0.0478767	0.0404678
chr12	50012132	50012232	5322542	0	-	0.5	(0.476,0.515]	chr12	507391	51	INTRON	INTRON	RACGAP1	ENSG00000161800.13	ENST00000312377.10:ENST00000427314.6:ENST00000454520.6:ENST00000551016.5:ENST00000547905.5:ENST00000548320.5:ENST00000548598.5:ENST00000552310.5:ENST00000550149.5:ENST00000546786.5:ENST00000546595.5:ENST00000551145.5:ENST00000548824.5:ENST00000548644.5:ENST00000551260.5:ENST00000546723.5:ENST00000552921.5:ENST00000548247.1:ENST00000552157.5:ENST00000546764.5:ENST00000551876.5:ENST00000549777.5:ENST00000550651.5:ENST00000552004.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	43	2	2.37731	2.4312899999999997	2.48527	0.03496	0.0111793	0.13747500000000001	0.0937192
chr14	55066814	55066913	5725530	0	+	0.383838	(0.378,0.408]	chr14	543395	23	UTR3	UTR3:EXON_MRNA:INTRON	MAPK1IP1L	ENSG00000168175.15	ENST00000395468.9:ENST00000622254.1	protein_coding	protein_coding	protein_coding	protein_coding	4	54	2	1.58349	2.43128	3.27907	0.0653091	0.0023379	0.180158	0.0442989
chr7	5208027	5208126	3272140	0	+	0.444444	(0.44,0.476]	chr7	304097	80	INTRON	INTRON	WIPI2	ENSG00000157954.15	ENST00000401525.7:ENST00000288828.9:ENST00000404704.7:ENST00000466014.5:ENST00000485854.5:ENST00000382384.6:ENST00000496867.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	43	2	1.9039	2.43125	2.9586	0.0501498	0.00758318	0.156383	0.0773151
chr22	26525968	26526068	7564413	0	-	0.36	(0.35,0.378]	chr22	773991	41	UTR3	UTR3:EXON_MRNA	TPST2	ENSG00000128294.16	ENST00000338754.9:ENST00000403880.5:ENST00000398110.6	protein_coding	protein_coding	protein_coding	protein_coding	9	114	2	1.48476	2.431185	3.37761	0.0300009	1.38324e-4	0.129138	0.0101276
chr2	47886430	47886529	1115923	0	-	0.484848	(0.476,0.515]	chr2	119690	202	INTRON	INTRON	FBXO11	ENSG00000138081.22	ENST00000684712.1:ENST00000682451.1:ENST00000403359.8:ENST00000402508.5:ENST00000683894.1:ENST00000681999.1:ENST00000682975.1:ENST00000684085.1:ENST00000492225.5:ENST00000424163.2:ENST00000480038.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	69	2	2.41121	2.43114	2.45107	0.0110342	0.00301722	0.0873897	0.0507519
chr5	119130309	119130406	2460366	0	+	0.402062	(0.378,0.408]	chr5	235644	5	INTRON	INTRON	DMXL1	ENSG00000172869.15	ENST00000539542.6:ENST00000503802.5:ENST00000311085.8:ENST00000504031.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	60	2	2.2259	2.431095	2.63629	0.0662381	0.001315	0.181924	0.0333932
chr1	180498784	180498883	595796	0	-	0.414141	(0.408,0.44]	chr1	71210	29	INTRON	INTRON	ACBD6	ENSG00000230124.8	ENST00000645415.1:ENST00000642319.1:ENST00000367595.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	58	2	2.16746	2.4310150000000004	2.69457	0.024436	0.00331036	0.12011	0.0527031
chr11	66366863	66366963	4968293	0	-	0.53	(0.515,0.57]	chr11	468511	3	SS3_PROX	SS3_PROX:INTRON	SLC29A2	ENSG00000174669.12	ENST00000311161.11:ENST00000357440.7:ENST00000544554.5:ENST00000540386.5:ENST00000619145.4:ENST00000546034.1:ENST00000541567.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	118	2	2.38494	2.431005	2.47707	0.00164178	3.62217e-4	0.0373835	0.0176171
chr2	8956304	8956403	1063093	0	-	0.313131	(0.28,0.32]	chr2	113375	127	INTRON	INTRON	MBOAT2	ENSG00000143797.12	ENST00000305997.8:ENST00000486484.5:ENST00000477073.5:ENST00000474341.5:ENST00000462696.1:ENST00000460786.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	54	2	2.28998	2.430965	2.57195	0.0331711	0.0166401	0.133994	0.110511
chr15	22531270	22531370	5974881	0	+	0.42	(0.408,0.44]	chr15	568084	139	INTRON	INTRON	HERC2P2	ENSG00000276550.5	ENST00000613386.4:ENST00000619021.4	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	6	86	2	1.92319	2.4309399999999997	2.93869	0.0247322	2.73901e-4	0.12011	0.0147448
chr3	196235250	196235348	1897773	0	-	0.489796	(0.476,0.515]	chr3	190004	10	UTR3	UTR3:EXON_MRNA:INTRON	PCYT1A	ENSG00000161217.12	ENST00000441879.5:ENST00000419333.5:ENST00000431016.6:ENST00000292823.6	protein_coding	protein_coding	protein_coding	protein_coding	4	52	2	1.61586	2.43091	3.24596	0.0567093	0.00322919	0.185107	0.0507087
chr6	33406923	33407006	2847106	0	+	0.493976	(0.476,0.515]	chr6	268694	1	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	KIFC1	ENSG00000237649.8	ENST00000428849.7:ENST00000494554.2	protein_coding	protein_coding	protein_coding	protein_coding	4	52	2	1.61586	2.43091	3.24596	0.0567093	0.00322919	0.185107	0.0507087
chr9	124656807	124656907	4348070	0	-	0.43	(0.408,0.44]	chr9	399255	611	INTRON	INTRON	NR6A1	ENSG00000148200.17	ENST00000487099.7:ENST00000373584.7:ENST00000416460.6:ENST00000344523.8	protein_coding	protein_coding	protein_coding	protein_coding	4	60	2	2.21238	2.43091	2.64944	0.0193525	0.00481947	0.119831	0.060277
chr3	33805416	33805516	1394447	0	+	0.46	(0.44,0.476]	chr3	146021	55	INTRON	INTRON	PDCD6IP	ENSG00000170248.15	ENST00000457054.6:ENST00000648706.1:ENST00000435909.5:ENST00000430877.5:ENST00000413073.1:ENST00000307296.8:ENST00000477798.5:ENST00000498147.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	11	149	2	1.88052	2.4309	2.98128	0.00808369	2.95634e-5	0.0766625	0.00432195
chr1	39163717	39163817	75475	0	+	0.44	(0.408,0.44]	chr1	9698	43	INTRON	INTRON	MACF1	ENSG00000127603.32	ENST00000361689.7:ENST00000689911.1:ENST00000567887.5:ENST00000372915.8:ENST00000472385.2:ENST00000693209.1:ENST00000524432.5:ENST00000467673.5:ENST00000688212.1:ENST00000672812.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	62	2	1.7743	2.43084	3.08738	0.0244755	0.00478231	0.12011	0.0636201
chr1	205734833	205734933	623736	0	-	0.42	(0.408,0.44]	chr1	74198	36	INTRON	INTRON	NUCKS1	ENSG00000069275.13	ENST00000367142.5	protein_coding	protein_coding	protein_coding	protein_coding	4	58	2	2.36185	2.43084	2.49983	0.0133164	0.00713527	0.094512	0.0756118
chr19	47626693	47626793	7085938	0	+	0.48	(0.476,0.515]	chr19	709045	187	INTRON	INTRON	ENSG00000268746	ENSG00000268746.1	ENST00000599924.1	lncRNA	lncRNA	lncRNA	lncRNA	3	43	2	1.91817	2.430835	2.9435	0.0459211	0.00929849	0.164984	0.0817766
chr21	15846082	15846180	7371277	0	+	0.153061	[0,0.28]	chr21	752292	32	INTRON	INTRON	USP25	ENSG00000155313.16	ENST00000400183.7:ENST00000285681.6:ENST00000285679.10:ENST00000351097.9:ENST00000449491.1	protein_coding	protein_coding	protein_coding	protein_coding	2	46	2	2.36637	2.4308199999999998	2.49527	0.0500615	0.0436497	0.17488	0.14882
chr14	102725573	102725671	5823877	0	+	0.5	(0.476,0.515]	chr14	552546	28	INTRON	INTRON	RCOR1	ENSG00000089902.10	ENST00000262241.7:ENST00000560472.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	79	2	1.75142	2.430815	3.11021	0.0259024	5.02606e-4	0.121522	0.020217099999999998
chr16	16546401	16546501	6311326	0	+	0.3	(0.28,0.32]	chr16	604098	464	INTRON	INTRON	ENSG00000260126	ENSG00000260126.2	ENST00000567465.2	lncRNA	lncRNA	lncRNA	lncRNA	3	54	2	2.08149	2.430765	2.78004	0.031124	0.0193244	0.143644	0.108861
chr16	18165740	18165840	6454292	0	-	0.32	(0.28,0.32]	chr16	621964	143	INTRON	INTRON	ENSG00000260242	ENSG00000260242.1	ENST00000563866.1	lncRNA	lncRNA	lncRNA	lncRNA	3	54	2	2.08149	2.430765	2.78004	0.031124	0.0193244	0.143644	0.108861
chr3	60180233	60180333	1711416	0	-	0.29	(0.28,0.32]	chr3	176138	995	INTRON	INTRON	FHIT	ENSG00000189283.10	ENST00000492590.6:ENST00000476844.5:ENST00000468189.5:ENST00000488467.5	protein_coding	protein_coding	protein_coding	protein_coding	3	54	2	2.08149	2.430765	2.78004	0.031124	0.0193244	0.143644	0.108861
chr3	138252370	138252470	1514617	0	+	0.32	(0.28,0.32]	chr3	158357	56	INTRON	INTRON	ARMC8	ENSG00000114098.18	ENST00000538260.5:ENST00000481646.5:ENST00000469044.6:ENST00000491704.5:ENST00000461822.5:ENST00000485396.5:ENST00000463485.5:ENST00000460495.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	54	2	2.08149	2.430765	2.78004	0.031124	0.0193244	0.143644	0.108861
chr2	61482956	61483023	1130633	0	-	0.358209	(0.35,0.378]	chr2	121518	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	XPO1	ENSG00000082898.19	ENST00000677110.1:ENST00000678113.1:ENST00000676553.1:ENST00000677556.1:ENST00000677814.1:ENST00000676771.1:ENST00000677803.1:ENST00000677239.1:ENST00000678790.1:ENST00000677928.1:ENST00000678182.1:ENST00000677150.1:ENST00000678172.1:ENST00000678360.1:ENST00000678081.1:ENST00000676889.1:ENST00000676783.1:ENST00000679035.1:ENST00000677422.1:ENST00000677417.1:ENST00000677813.1:ENST00000676999.1:ENST00000676667.1:ENST00000678263.1:ENST00000678877.1:ENST00000677933.1:ENST00000680228.1:ENST00000677289.1:ENST00000677190.1:ENST00000481073.6:ENST00000677476.1:ENST00000469337.2:ENST00000401558.7:ENST00000428210.5:ENST00000677290.1:ENST00000677850.1:ENST00000678640.1:ENST00000676778.1:ENST00000451765.6:ENST00000676789.1:ENST00000678741.1:ENST00000404992.6:ENST00000406957.5:ENST00000677157.1:ENST00000461407.5:ENST00000492182.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	17	243	2	2.37693	2.4307600000000003	2.48459	7.25263e-4	8.40649e-5	0.0247646	0.00774939
chrX	24066492	24066592	7630857	0	+	0.41	(0.408,0.44]	chrX	781474	4	SS5_PROX	SS5_PROX:INTRON	EIF2S3	ENSG00000130741.11	ENST00000253039.9	protein_coding	protein_coding	protein_coding	protein_coding	8	107	2	2.03451	2.43074	2.82697	0.00626591	4.95662e-4	0.0685243	0.0201536
chr19	28422892	28422992	7165371	0	-	0.48	(0.476,0.515]	chr19	724146	26	INTRON	INTRON	ENSG00000260725	ENSG00000260725.1	ENST00000567877.1	lncRNA	lncRNA	lncRNA	lncRNA	17	222	2	2.10616	2.43073	2.7553	7.10937e-4	6.53328e-5	0.0242861	0.00715707
chr8	101203430	101203530	4006266	0	-	0.34	(0.32,0.35]	chr8	366737	12	UTR5	UTR5:EXON_MRNA:INTRON	ZNF706	ENSG00000120963.12	ENST00000520984.5:ENST00000311212.9:ENST00000519744.5:ENST00000517844.5:ENST00000520347.5:ENST00000519882.5:ENST00000521272.5:ENST00000518336.5:ENST00000523146.1:ENST00000519916.1:ENST00000523922.1:ENST00000520454.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	17	242	2	1.96741	2.43073	2.89405	0.00130546	1.52482e-4	0.0333932	0.0112857
chr19	28533300	28533400	7166428	0	-	0.37	(0.35,0.378]	chr19	724189	651	INTRON	INTRON	ENSG00000283403:ENSG00000267243	ENSG00000283403.1:ENSG00000267243.6	ENST00000592347.5:ENST00000593065.5	lncRNA	lncRNA	lncRNA	lncRNA	6	87	2	1.97697	2.43071	2.88445	0.0109711	0.00212567	0.092635	0.041756
chr15	84998637	84998737	6089098	0	+	0.34	(0.32,0.35]	chr15	579504	159	INTRON	INTRON	PDE8A	ENSG00000073417.15	ENST00000310298.8:ENST00000557957.5:ENST00000394553.6:ENST00000339708.9:ENST00000478717.5:ENST00000485596.5:ENST00000559742.5:ENST00000559086.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	60	2	1.78201	2.4306799999999997	3.07935	0.0365003	0.00724137	0.153759	0.0729826
chr10	74014834	74014934	4454668	0	+	0.47	(0.44,0.476]	chr10	411385	161	INTRON	INTRON	VCL	ENSG00000035403.18	ENST00000623461.3:ENST00000372755.7:ENST00000624354.3:ENST00000211998.10:ENST00000478896.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	10	124	2	2.06568	2.4306650000000003	2.79565	0.00202294	7.94781e-4	0.0416117	0.0260201
chr1	25475839	25475939	48402	0	+	0.3	(0.28,0.32]	chr1	5949	166	INTRON	INTRON	MACO1	ENSG00000204178.11	ENST00000399766.7:ENST00000374343.5:ENST00000647928.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	57	2	2.18975	2.4306400000000004	2.67153	0.0776042	0.00436402	0.196285	0.060356
chr11	9308886	9308986	4909379	0	-	0.44	(0.408,0.44]	chr11	460162	88	INTRON	INTRON	TMEM41B	ENSG00000166471.11	ENST00000524543.5:ENST00000528080.6:ENST00000299596.8:ENST00000611268.4:ENST00000527813.5:ENST00000533723.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	43	2	2.27464	2.43044	2.58624	0.0273686	0.0158016	0.123904	0.109464
chr3	155879552	155879651	1537216	0	+	0.434343	(0.408,0.44]	chr3	160082	83	INTRON	INTRON	GMPS	ENSG00000163655.16	ENST00000496455.7:ENST00000295920.7	protein_coding	protein_coding	protein_coding	protein_coding	3	43	2	2.27464	2.43044	2.58624	0.0273686	0.0158016	0.123904	0.109464
chr3	179427541	179427641	1878661	0	-	0.43	(0.408,0.44]	chr3	187694	9	INTRON	INTRON	GNB4	ENSG00000114450.11	ENST00000232564.8:ENST00000676128.1:ENST00000674862.1:ENST00000675901.1:ENST00000497513.1	protein_coding	protein_coding	protein_coding	protein_coding	3	43	2	2.27464	2.43044	2.58624	0.0273686	0.0158016	0.123904	0.109464
chr2	87468352	87468452	826050	0	+	0.48	(0.476,0.515]	chr2	92409	99	INTRON	INTRON	CYTOR:ENSG00000284879	ENSG00000222041.12:ENSG00000284879.1	ENST00000642796.1:ENST00000643589.1:ENST00000642451.1:ENST00000646386.1:ENST00000644478.1:ENST00000409139.6:ENST00000331944.10:ENST00000644125.1:ENST00000643743.1:ENST00000644577.1:ENST00000643276.1:ENST00000409898.2:ENST00000419680.6:ENST00000645257.1:ENST00000644976.1:ENST00000643070.1:ENST00000646855.1:ENST00000414584.1:ENST00000455131.5:ENST00000646636.1:ENST00000642293.1:ENST00000423846.5:ENST00000644040.1:ENST00000645138.1	lncRNA	lncRNA	lncRNA	lncRNA	18	242	2	2.23789	2.430435	2.62298	4.31921e-4	7.01638e-5	0.0186576	0.00749221
chr1	179877532	179877592	593468	0	-	0.366667	(0.35,0.378]	chr1	71125	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TOR1AIP2	ENSG00000169905.13	ENST00000367612.7:ENST00000609928.6:ENST00000482587.5:ENST00000495650.1:ENST00000474318.1:ENST00000483123.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	92	2	2.39519	2.4303850000000002	2.46558	0.00401951	0.00387127	0.0578189	0.0543569
chr6	158805320	158805420	3253197	0	-	0.28	[0,0.28]	chr6	302380	156	INTRON	INTRON	EZR	ENSG00000092820.19	ENST00000337147.11:ENST00000367075.4:ENST00000476189.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	101	2	2.31716	2.43029	2.54342	0.0105954	0.00702731	0.0861859	0.0754576
chr12	53666510	53666607	5329361	0	-	0.43299	(0.408,0.44]	chr12	508422	7	INTRON	INTRON	ATP5MC2	ENSG00000135390.21	ENST00000550241.1:ENST00000673498.1:ENST00000394349.9:ENST00000552242.5:ENST00000495596.5:ENST00000549164.5:ENST00000338662.6:ENST00000549748.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	44	2	2.36073	2.43028	2.49983	0.0481658	0.00713527	0.153019	0.0756118
chr16	71742937	71743030	6513781	0	-	0.408602	(0.408,0.44]	chr16	631076	8	EXON_MRNA	EXON_MRNA:INTRON	AP1G1	ENSG00000166747.13	ENST00000299980.9:ENST00000569748.5:ENST00000564155.5:ENST00000393512.7:ENST00000565009.5:ENST00000565642.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	44	2	2.36073	2.43028	2.49983	0.0481658	0.00713527	0.153019	0.0756118
chr7	77697748	77697848	3343082	0	+	0.42	(0.408,0.44]	chr7	311431	4	SS5_PROX	SS5_PROX:INTRON	RSBN1L	ENSG00000187257.16	ENST00000334955.13:ENST00000445288.5	protein_coding	protein_coding	protein_coding	protein_coding	3	44	2	2.36073	2.43028	2.49983	0.0481658	0.00713527	0.153019	0.0756118
chr12	121328916	121328997	5436941	0	-	0.345679	(0.32,0.35]	chr12	519882	2	SS3_PROX	SS3_PROX:INTRON	ANAPC5	ENSG00000089053.13	ENST00000261819.8:ENST00000535641.5:ENST00000541887.5:ENST00000534976.5:ENST00000441917.6:ENST00000539079.5:ENST00000544314.5:ENST00000535482.1:ENST00000545218.5:ENST00000535472.5:ENST00000538334.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	121	2	1.81244	2.4302650000000003	3.04809	0.00748885	0.00120984	0.0772645	0.0317954
chr16	89392075	89392175	6542606	0	-	0.47	(0.44,0.476]	chr16	634240	186	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000647238.1:ENST00000644045.1:ENST00000643147.1:ENST00000644139.1:ENST00000568512.6:ENST00000566973.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	81	2	2.12263	2.4302200000000003	2.73781	0.00692375	0.00276493	0.0718189	0.04867
chr20	17976502	17976602	7243289	0	+	0.41	(0.408,0.44]	chr20	735422	2	INTRON	INTRON	MGME1	ENSG00000125871.14	ENST00000377710.10:ENST00000377709.1:ENST00000377704.4:ENST00000463219.1:ENST00000467391.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	43	2	2.07919	2.430205	2.78122	0.0291499	0.015812	0.14147	0.101453
chr16	23847078	23847177	6323869	0	+	0.363636	(0.35,0.378]	chr16	605693	93	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000498058.1:ENST00000645517.1:ENST00000498739.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	166	2	2.14192	2.430175	2.71843	0.0010933	5.87837e-4	0.0302914	0.0224695
chr8	129452898	129452998	4059802	0	-	0.28	[0,0.28]	chr8	369596	88	INTRON	INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1:ENST00000676273.1:ENST00000667643.1:ENST00000668791.1:ENST00000663716.1:ENST00000663572.1:ENST00000676148.1:ENST00000667962.1:ENST00000674877.1:ENST00000675316.1:ENST00000674656.1:ENST00000446592.7:ENST00000667341.1:ENST00000675186.1:ENST00000652971.1:ENST00000661447.1:ENST00000674863.1:ENST00000675498.1:ENST00000675527.1:ENST00000676108.1:ENST00000657647.1:ENST00000675589.1:ENST00000675913.1:ENST00000675109.1:ENST00000671632.1:ENST00000671311.1:ENST00000676099.1:ENST00000660652.1:ENST00000675522.1:ENST00000675183.1:ENST00000658861.1:ENST00000663991.1:ENST00000675044.1:ENST00000675435.1:ENST00000674639.1:ENST00000676069.1:ENST00000675532.1:ENST00000674762.1:ENST00000523151.6:ENST00000675948.1:ENST00000665364.1:ENST00000657251.1:ENST00000675166.1:ENST00000674883.1:ENST00000675867.1:ENST00000674580.1:ENST00000675393.1:ENST00000520048.1:ENST00000674906.1:ENST00000676030.1:ENST00000670588.1:ENST00000675072.1:ENST00000664936.1:ENST00000652914.1:ENST00000657069.1	lncRNA	lncRNA	lncRNA	lncRNA	6	118	2	2.01165	2.430125	2.8486	0.0156888	0.00254189	0.101453	0.0465056
chr12	31321252	31321352	5302807	0	-	0.36	(0.35,0.378]	chr12	504668	158	INTRON	INTRON	SINHCAF	ENSG00000139146.14	ENST00000337682.9:ENST00000539409.5:ENST00000454658.6:ENST00000542983.1:ENST00000539004.5:ENST00000543615.1:ENST00000536836.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	66	2	1.64329	2.43003	3.21677	0.0384351	0.00313804	0.142316	0.0514466
chr5	141594739	141594839	2739946	0	-	0.56	(0.515,0.57]	chr5	258168	61	INTRON	INTRON	DIAPH1	ENSG00000131504.18	ENST00000647433.1:ENST00000389054.8:ENST00000518047.5:ENST00000523100.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	90	2	2.18697	2.429955	2.67294	0.00232379	0.00112534	0.0442989	0.0306963
chr6	24719459	24719559	3070732	0	-	0.53	(0.515,0.57]	chr6	285371	2	SS5_PROX	SS5_PROX:INTRON	C6orf62	ENSG00000112308.13	ENST00000378102.3	protein_coding	protein_coding	protein_coding	protein_coding	17	178	2	1.66289	2.429955	3.19702	0.00451529	7.99636e-6	0.061545	0.0021365
chr8	129490301	129490397	4060181	0	-	0.458333	(0.44,0.476]	chr8	369624	2	INTRON	INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1:ENST00000676273.1:ENST00000667643.1:ENST00000668791.1:ENST00000663716.1:ENST00000663572.1:ENST00000676148.1:ENST00000667962.1:ENST00000674877.1:ENST00000675316.1:ENST00000674656.1:ENST00000446592.7:ENST00000667341.1:ENST00000675186.1:ENST00000652971.1:ENST00000661447.1:ENST00000674863.1:ENST00000675498.1:ENST00000675527.1:ENST00000676108.1:ENST00000657647.1:ENST00000675589.1:ENST00000675913.1:ENST00000675109.1:ENST00000671632.1:ENST00000671311.1:ENST00000676099.1:ENST00000660652.1:ENST00000675522.1:ENST00000675183.1:ENST00000658861.1:ENST00000663991.1:ENST00000675044.1:ENST00000675435.1:ENST00000674639.1:ENST00000676069.1:ENST00000675532.1:ENST00000674762.1:ENST00000523151.6:ENST00000675948.1:ENST00000665364.1:ENST00000657251.1:ENST00000675166.1:ENST00000674883.1:ENST00000675867.1:ENST00000674580.1:ENST00000675393.1:ENST00000520048.1:ENST00000674906.1:ENST00000676030.1:ENST00000670588.1:ENST00000675072.1:ENST00000664936.1:ENST00000652914.1:ENST00000657069.1	lncRNA	lncRNA	lncRNA	lncRNA	21	261	2	1.97341	2.42993	2.88645	7.27482e-4	3.14e-5	0.0245693	0.00467454
chr6	158570221	158570321	3021700	0	+	0.48	(0.476,0.515]	chr6	281792	96	INTRON	INTRON	TMEM181	ENSG00000146433.10	ENST00000367090.4:ENST00000684151.1	protein_coding	protein_coding	protein_coding	protein_coding	9	89	2	1.50914	2.429865	3.35059	0.0212469	0.00171515	0.11322	0.0381936
chr20	47222652	47222749	7348153	0	-	0.42268	(0.408,0.44]	chr20	749241	8	INTRON	INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000467200.6:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4	protein_coding	protein_coding	protein_coding	protein_coding	3	44	2	2.11447	2.429825	2.74518	0.0285207	0.0152229	0.12666	0.108535
chr3	47690603	47690700	1684151	0	-	0.360825	(0.35,0.378]	chr3	172052	8	INTRON	INTRON	SMARCC1	ENSG00000173473.11	ENST00000254480.10:ENST00000425518.5:ENST00000462198.5:ENST00000485737.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	57	2	1.75081	2.4297199999999997	3.10863	0.0427459	0.00470896	0.148082	0.0631419
chr8	129569322	129569422	4060980	0	-	0.33	(0.32,0.35]	chr8	369672	122	INTRON	INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1:ENST00000676273.1:ENST00000667643.1:ENST00000668791.1:ENST00000663716.1:ENST00000663572.1:ENST00000676148.1:ENST00000667962.1:ENST00000674877.1:ENST00000675316.1:ENST00000674656.1:ENST00000446592.7:ENST00000667341.1:ENST00000675186.1:ENST00000652971.1:ENST00000661447.1:ENST00000674863.1:ENST00000675498.1:ENST00000675527.1:ENST00000676108.1:ENST00000657647.1:ENST00000675589.1:ENST00000675913.1:ENST00000675109.1:ENST00000671632.1:ENST00000671311.1:ENST00000676099.1:ENST00000660652.1:ENST00000675522.1:ENST00000675044.1:ENST00000675435.1:ENST00000674639.1:ENST00000676069.1:ENST00000675532.1:ENST00000674762.1:ENST00000523151.6:ENST00000675948.1:ENST00000665364.1:ENST00000657251.1:ENST00000675166.1:ENST00000674883.1:ENST00000675867.1:ENST00000674580.1:ENST00000675393.1:ENST00000520048.1:ENST00000674906.1:ENST00000676030.1:ENST00000670588.1:ENST00000675072.1:ENST00000664936.1:ENST00000652914.1:ENST00000657069.1:ENST00000674882.1	lncRNA	lncRNA	lncRNA	lncRNA	8	128	2	2.32879	2.42971	2.53063	0.00373122	0.00105397	0.0535844	0.0299229
chr1	32051179	32051279	63027	0	+	0.44	(0.408,0.44]	chr1	7991	54	INTRON	INTRON	KHDRBS1	ENSG00000121774.18	ENST00000484270.2	protein_coding	processed_transcript	protein_coding	processed_transcript	3	44	2	1.85305	2.4295	3.00595	0.0543543	0.00781452	0.182243	0.0759016
chr17	59128597	59128697	6802132	0	-	0.33	(0.32,0.35]	chr17	671849	38	INTRON	INTRON	SKA2	ENSG00000182628.13	ENST00000330137.12:ENST00000580541.1:ENST00000578105.1:ENST00000578519.5:ENST00000583927.1:ENST00000581068.5:ENST00000437036.6:ENST00000583380.5:ENST00000583976.1:ENST00000584089.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	50	2	1.83416	2.42943	3.0247	0.0631198	0.00671684	0.176946	0.0738715
chr11	76883441	76883541	4836998	0	+	0.48	(0.476,0.515]	chr11	451195	148	INTRON	INTRON	ACER3	ENSG00000078124.13	ENST00000679754.1:ENST00000534206.5:ENST00000679866.1:ENST00000680842.1:ENST00000681257.1:ENST00000681354.1:ENST00000681732.1:ENST00000680583.1:ENST00000532485.6:ENST00000681375.1:ENST00000681004.1:ENST00000525194.5:ENST00000525861.5:ENST00000530182.6:ENST00000531461.5:ENST00000681955.1:ENST00000681411.1:ENST00000679611.1:ENST00000679924.1:ENST00000526597.5:ENST00000681251.1:ENST00000530334.6:ENST00000533873.1:ENST00000531352.5:ENST00000278544.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	43	2	2.05154	2.429415	2.80729	0.0336015	0.0126008	0.134145	0.0980703
chr2	233846227	233846320	1343776	0	-	0.494624	(0.476,0.515]	chr2	140840	2	SS3_PROX	SS3_PROX:INTRON	HJURP	ENSG00000123485.12	ENST00000432087.5:ENST00000441687.5:ENST00000411486.7:ENST00000414924.5:ENST00000454020.1:ENST00000453122.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	43	2	2.05154	2.429415	2.80729	0.0336015	0.0126008	0.134145	0.0980703
chr1	176042685	176042785	590052	0	-	0.43	(0.408,0.44]	chr1	70893	1	SS5_PROX	SS5_PROX:INTRON	COP1	ENSG00000143207.21	ENST00000367669.8:ENST00000367667.5:ENST00000461830.6:ENST00000367666.5:ENST00000649803.1:ENST00000308769.12	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	32	2	2.27698	2.429385	2.58179	0.0583528	0.024638	0.167723	0.131869
chr17	58764554	58764654	6637730	0	+	0.44	(0.408,0.44]	chr17	648237	77	INTRON	INTRON	PPM1E	ENSG00000175175.6	ENST00000308249.4	protein_coding	protein_coding	protein_coding	protein_coding	2	32	2	2.27698	2.429385	2.58179	0.0583528	0.024638	0.167723	0.131869
chr7	112767296	112767385	3624167	0	-	0.426966	(0.408,0.44]	chr7	337139	1	CDS	CDS:EXON_MRNA	TMEM168	ENSG00000146802.13	ENST00000312814.11:ENST00000454074.5:ENST00000447395.5:ENST00000418785.5	protein_coding	protein_coding	protein_coding	protein_coding	2	32	2	2.27698	2.429385	2.58179	0.0583528	0.024638	0.167723	0.131869
chr7	121085527	121085626	3394612	0	+	0.424242	(0.408,0.44]	chr7	317710	85	INTRON	INTRON	CPED1	ENSG00000106034.18	ENST00000310396.10:ENST00000428526.5:ENST00000450913.6:ENST00000520801.5:ENST00000423795.5:ENST00000443817.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	32	2	2.27698	2.429385	2.58179	0.0583528	0.024638	0.167723	0.131869
chr7	155751051	155751150	3452978	0	+	0.414141	(0.408,0.44]	chr7	322730	40	INTRON	INTRON	RBM33	ENSG00000184863.11	ENST00000401878.8:ENST00000392761.3:ENST00000438356.1:ENST00000341148.7	protein_coding	protein_coding	protein_coding	protein_coding	2	32	2	2.27698	2.429385	2.58179	0.0583528	0.024638	0.167723	0.131869
chr14	101773637	101773737	5818614	0	+	0.49	(0.476,0.515]	chr14	551819	67	INTRON	INTRON	PPP2R5C	ENSG00000078304.20	ENST00000694906.1:ENST00000422945.6:ENST00000554442.5:ENST00000556068.5:ENST00000328724.9:ENST00000554504.1:ENST00000553890.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	51	2	1.91525	2.429375	2.9435	0.0232571	0.00929849	0.127416	0.0817766
chr8	23534112	23534211	3715149	0	+	0.464646	(0.44,0.476]	chr8	345217	23	INTRON	INTRON	SLC25A37	ENSG00000147454.14	ENST00000519973.6:ENST00000290075.10:ENST00000417331.6:ENST00000518881.5:ENST00000520654.1:ENST00000523930.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	23	287	2	2.07976	2.42924	2.77872	3.33813e-4	4.0406e-5	0.0162557	0.00539487
chr1	38020365	38020461	74348	0	+	0.40625	(0.378,0.408]	chr1	9612	6	INTRON	INTRON	UTP11	ENSG00000183520.12	ENST00000373014.5:ENST00000488453.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	72	2	1.98888	2.429215	2.86955	0.0205239	0.00159247	0.110999	0.0367961
chr1	230180306	230180405	335210	0	+	0.393939	(0.378,0.408]	chr1	38936	16	INTRON	INTRON	GALNT2	ENSG00000143641.10	ENST00000494106.1:ENST00000366672.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	33	2	2.2259	2.4291850000000004	2.63247	0.0662381	0.0215745	0.181924	0.123836
chr17	57330824	57330924	6633497	0	+	0.38	(0.378,0.408]	chr17	648024	201	INTRON	INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000581776.5:ENST00000674961.1:ENST00000582453.5:ENST00000675656.1:ENST00000322684.7:ENST00000579590.5:ENST00000676073.1:ENST00000675822.1:ENST00000442934.6:ENST00000579180.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	33	2	2.2259	2.4291850000000004	2.63247	0.0662381	0.0215745	0.181924	0.123836
chr2	113243698	113243798	853130	0	+	0.39	(0.378,0.408]	chr2	95735	24	INTRON	INTRON	PAX8-AS1	ENSG00000189223.15	ENST00000556070.6:ENST00000623306.3:ENST00000451179.6:ENST00000653055.1:ENST00000665814.1:ENST00000669027.1:ENST00000617509.4:ENST00000616073.5:ENST00000422956.6:ENST00000661674.1:ENST00000617278.2:ENST00000654203.1:ENST00000663248.1:ENST00000333145.9:ENST00000665717.1:ENST00000624706.3:ENST00000445745.6:ENST00000436293.6:ENST00000661255.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	2	33	2	2.2259	2.4291850000000004	2.63247	0.0662381	0.0215745	0.181924	0.123836
chr4	143897282	143897382	2251411	0	-	0.4	(0.378,0.408]	chr4	219936	164	INTRON	INTRON	GYPE	ENSG00000197465.14	ENST00000358615.9:ENST00000506264.5:ENST00000437468.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	33	2	2.2259	2.4291850000000004	2.63247	0.0662381	0.0215745	0.181924	0.123836
chr6	15455468	15455568	2825044	0	+	0.38	(0.378,0.408]	chr6	265210	29	INTRON	INTRON	JARID2	ENSG00000008083.14	ENST00000341776.7:ENST00000397311.4	protein_coding	protein_coding	protein_coding	protein_coding	2	33	2	2.2259	2.4291850000000004	2.63247	0.0662381	0.0215745	0.181924	0.123836
chr11	65632984	65633083	4806829	0	+	0.535354	(0.515,0.57]	chr11	446872	20	INTRON	INTRON	PCNX3	ENSG00000197136.5	ENST00000355703.4:ENST00000439247.2:ENST00000531280.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	60	2	2.28534	2.42916	2.57298	0.0061678	0.00506495	0.067653	0.0646039
chr3	72419908	72420008	1745654	0	-	0.26	[0,0.28]	chr3	177368	394	INTRON	INTRON	RYBP	ENSG00000163602.12	ENST00000477973.5	protein_coding	protein_coding	protein_coding	protein_coding	4	75	2	1.55741	2.42912	3.30083	0.0792968	0.00319246	0.199711	0.0520345
chr13	19715581	19715681	5552266	0	-	0.45	(0.44,0.476]	chr13	530696	56	INTRON	INTRON	PSPC1	ENSG00000121390.19	ENST00000471658.5:ENST00000492741.5:ENST00000635562.1:ENST00000338910.9:ENST00000619300.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	95	2	2.03286	2.4290849999999997	2.82531	0.00977911	5.00634e-4	0.0835427	0.020217099999999998
chr1	92340987	92341086	161800	0	+	0.393939	(0.378,0.408]	chr1	17491	42	INTRON	INTRON	RPAP2	ENSG00000122484.9	ENST00000610020.2:ENST00000477322.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	33	2	2.30961	2.42905	2.54849	0.055088	0.0273196	0.165463	0.136494
chr17	75384089	75384189	6837582	0	-	0.39	(0.378,0.408]	chr17	675716	509	INTRON	INTRON	GRB2	ENSG00000177885.15	ENST00000316615.9:ENST00000316804.10:ENST00000392562.5:ENST00000392564.5:ENST00000392563.5:ENST00000648046.1:ENST00000578961.5:ENST00000582582.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	33	2	2.30961	2.42905	2.54849	0.055088	0.0273196	0.165463	0.136494
chr21	33575000	33575095	7397772	0	+	0.378947	(0.378,0.408]	chr21	753583	12	INTRON	INTRON	SON	ENSG00000159140.22	ENST00000356577.10:ENST00000381692.6:ENST00000695559.1:ENST00000455528.5:ENST00000436227.5:ENST00000457208.5:ENST00000467616.5:ENST00000473102.5:ENST00000484294.5:ENST00000470533.5:ENST00000478183.5:ENST00000465834.5:ENST00000477419.5:ENST00000491794.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	33	2	2.30961	2.42905	2.54849	0.055088	0.0273196	0.165463	0.136494
chr22	35131359	35131459	7580068	0	-	0.38	(0.378,0.408]	chr22	775756	109	INTRON	INTRON	LINC01399	ENSG00000233080.3	ENST00000423311.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	2	33	2	2.30961	2.42905	2.54849	0.055088	0.0273196	0.165463	0.136494
chr4	126570406	126570506	2236413	0	-	0.4	(0.378,0.408]	chr4	219023	1049	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	2	33	2	2.30961	2.42905	2.54849	0.055088	0.0273196	0.165463	0.136494
chr4	159344159	159344259	2075950	0	+	0.39	(0.378,0.408]	chr4	205314	1	SS5_PROX	SS5_PROX:INTRON	RAPGEF2	ENSG00000109756.10	ENST00000644474.1:ENST00000691494.1:ENST00000644902.1:ENST00000264431.8:ENST00000502485.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	33	2	2.30961	2.42905	2.54849	0.055088	0.0273196	0.165463	0.136494
chr7	30601700	30601795	3301502	0	+	0.294737	(0.28,0.32]	chr7	306537	6	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	GARS1	ENSG00000106105.15	ENST00000675051.1:ENST00000470392.2:ENST00000674643.1:ENST00000675529.1:ENST00000674807.1:ENST00000675810.1:ENST00000676088.1:ENST00000674815.1:ENST00000676403.1:ENST00000485784.2:ENST00000676210.1:ENST00000478124.6:ENST00000454308.6:ENST00000389266.8:ENST00000675693.1:ENST00000676259.1:ENST00000675651.1:ENST00000674616.1:ENST00000674737.1:ENST00000675859.1:ENST00000676140.1:ENST00000674969.1:ENST00000676164.1:ENST00000675886.1:ENST00000444666.6:ENST00000675587.1:ENST00000674851.1:ENST00000675863.1:ENST00000675025.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	116	2	2.38601	2.4290200000000004	2.47203	0.0114089	0.00129677	0.0886611	0.0333764
chr17	61945080	61945179	6809641	0	-	0.323232	(0.32,0.35]	chr17	672797	26	UTR3	UTR3:EXON_MRNA	MED13	ENSG00000108510.10	ENST00000397786.7	protein_coding	protein_coding	protein_coding	protein_coding	5	81	2	2.38582	2.42901	2.4722	0.0138529	0.00307237	0.0953077	0.0509893
chrX	154675638	154675736	7914553	0	-	0.408163	(0.378,0.408]	chrX	806053	5	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	GAB3	ENSG00000160219.12	ENST00000496390.5:ENST00000424127.3:ENST00000369575.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	55	2	1.86598	2.42884	2.9917	0.0300232	0.0068789	0.129138	0.0749442
chr10	73039214	73039313	4647260	0	-	0.414141	(0.408,0.44]	chr10	427500	85	INTRON	INTRON	P4HA1	ENSG00000122884.13	ENST00000394890.7:ENST00000307116.6:ENST00000373008.6:ENST00000440381.5:ENST00000263556.3	protein_coding	protein_coding	protein_coding	protein_coding	8	110	2	2.09818	2.428815	2.75945	0.00772939	2.60318e-4	0.0757122	0.014326
chr22	16789596	16789696	7546295	0	-	0.33	(0.32,0.35]	chr22	771315	48	INTRON	INTRON	XKR3	ENSG00000172967.8	ENST00000331428.5:ENST00000684488.1	protein_coding	protein_coding	protein_coding	protein_coding	4	61	2	1.61669	2.42878	3.24087	0.0578816	0.00420518	0.188651	0.0572185
chr9	120461840	120461939	4332680	0	-	0.434343	(0.408,0.44]	chr9	398037	7	INTRON	INTRON	CDK5RAP2	ENSG00000136861.19	ENST00000349780.9:ENST00000360190.8:ENST00000687279.1:ENST00000687633.1:ENST00000684780.1:ENST00000687311.1:ENST00000479584.2:ENST00000690814.1:ENST00000686842.1:ENST00000693714.1:ENST00000693386.1:ENST00000692746.1:ENST00000686376.1:ENST00000692155.1:ENST00000690646.1:ENST00000693433.1:ENST00000688923.1:ENST00000473282.6:ENST00000480112.5:ENST00000685866.1:ENST00000689688.1:ENST00000416449.6:ENST00000691504.1:ENST00000360822.8:ENST00000693728.1:ENST00000483412.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	80	2	1.91269	2.42875	2.94481	0.0153219	0.00110214	0.100173	0.03038
chr10	125147742	125147842	4714215	0	-	0.57	(0.515,0.57]	chr10	434933	96	INTRON	INTRON	CTBP2	ENSG00000175029.17	ENST00000337195.9:ENST00000411419.6:ENST00000494626.6:ENST00000531469.5:ENST00000460976.5:ENST00000476817.1:ENST00000530884.1:ENST00000467395.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	37	2	1.8707	2.428735	2.98677	0.0523213	0.00632549	0.160182	0.0722266
chr18	2564259	2564359	6942552	0	-	0.53	(0.515,0.57]	chr18	686671	4	SS3_PROX	SS3_PROX:INTRON	METTL4	ENSG00000101574.15	ENST00000319888.10:ENST00000574538.2:ENST00000573134.1:ENST00000577166.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	37	2	1.8707	2.428735	2.98677	0.0523213	0.00632549	0.160182	0.0722266
chr1	16371405	16371504	35802	0	+	0.474747	(0.44,0.476]	chr1	4353	30	INTRON	INTRON	SZRD1	ENSG00000055070.17	ENST00000475078.1:ENST00000471507.5:ENST00000401089.3:ENST00000486763.5:ENST00000401088.9:ENST00000475554.5:ENST00000476423.5:ENST00000472351.5:ENST00000492354.1:ENST00000472461.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	32	2	2.39604	2.4286950000000003	2.46135	0.0404291	0.0374637	0.161534	0.140008
chr16	15702517	15702617	6307424	0	+	0.46	(0.44,0.476]	chr16	603482	5	INTRON	INTRON	NDE1	ENSG00000072864.16	ENST00000396355.5:ENST00000674888.1:ENST00000675171.1:ENST00000675951.1:ENST00000674900.1:ENST00000674588.1:ENST00000674538.1:ENST00000396354.6:ENST00000675926.1:ENST00000674995.1:ENST00000674554.1:ENST00000674581.1:ENST00000577101.6:ENST00000572756.6:ENST00000573694.5:ENST00000572967.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	32	2	2.39604	2.4286950000000003	2.46135	0.0404291	0.0374637	0.161534	0.140008
chr16	70161643	70161742	6383936	0	+	0.444444	(0.44,0.476]	chr16	613564	49	UTR3	UTR3:EXON_MRNA	PDPR	ENSG00000090857.14	ENST00000288050.9	protein_coding	protein_coding	protein_coding	protein_coding	2	32	2	2.39604	2.4286950000000003	2.46135	0.0404291	0.0374637	0.161534	0.140008
chr16	89408853	89408953	6542777	0	-	0.45	(0.44,0.476]	chr16	634254	47	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000647238.1:ENST00000644045.1:ENST00000643147.1:ENST00000644139.1:ENST00000568512.6:ENST00000566973.1:ENST00000562211.2:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	32	2	2.39604	2.4286950000000003	2.46135	0.0404291	0.0374637	0.161534	0.140008
chr22	45761109	45761209	7531390	0	+	0.45	(0.44,0.476]	chr22	770081	164	INTRON	INTRON	ATXN10	ENSG00000130638.17	ENST00000381061.8:ENST00000252934.10:ENST00000435026.5:ENST00000493643.3:ENST00000451241.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	32	2	2.39604	2.4286950000000003	2.46135	0.0404291	0.0374637	0.161534	0.140008
chr4	143541857	143541953	2055775	0	+	0.46875	(0.44,0.476]	chr4	203898	10	INTRON	INTRON	SMARCA5	ENSG00000153147.6	ENST00000283131.4	protein_coding	protein_coding	protein_coding	protein_coding	2	32	2	2.39604	2.4286950000000003	2.46135	0.0404291	0.0374637	0.161534	0.140008
chr8	42330513	42330613	3743564	0	+	0.47	(0.44,0.476]	chr8	348168	14	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	IKBKB	ENSG00000104365.16	ENST00000520810.6:ENST00000629753.2:ENST00000517890.5:ENST00000520835.7:ENST00000518679.5:ENST00000342222.6:ENST00000520201.5:ENST00000520655.5:ENST00000522147.4:ENST00000523517.5:ENST00000416505.7:ENST00000649612.3:ENST00000648136.2:ENST00000676525.1:ENST00000523599.2:ENST00000519938.5:ENST00000522103.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	32	2	2.39604	2.4286950000000003	2.46135	0.0404291	0.0374637	0.161534	0.140008
chr13	19673049	19673147	5452420	0	+	0.316327	(0.28,0.32]	chr13	522423	13	UTR3	UTR3:EXON_MRNA	MPHOSPH8	ENSG00000196199.14	ENST00000361479.10	protein_coding	protein_coding	protein_coding	protein_coding	6	102	2	1.93579	2.428605	2.92142	0.0139701	0.00234443	0.10247	0.0434875
chr9	131268687	131268786	4362071	0	-	0.515152	(0.476,0.515]	chr9	401078	37	INTRON	INTRON	FAM78A	ENSG00000126882.13	ENST00000372269.7:ENST00000372271.4:ENST00000464831.1	protein_coding	protein_coding	protein_coding	protein_coding	8	106	2	2.4132	2.428565	2.44393	0.00417094	7.12759e-4	0.0570595	0.0243332
chrX	71536077	71536177	7679972	0	+	0.29	(0.28,0.32]	chrX	786381	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	OGT	ENSG00000147162.14	ENST00000373719.8:ENST00000488174.5:ENST00000373701.7:ENST00000472270.1:ENST00000498566.3:ENST00000444774.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	10	143	2	1.46695	2.42852	3.39009	0.0309608	1.74666e-4	0.13151	0.0114806
chr20	58902661	58902758	7291131	0	+	0.340206	(0.32,0.35]	chr20	741842	23	INTRON	INTRON	GNAS	ENSG00000087460.29	ENST00000313949.11:ENST00000371075.7:ENST00000419558.7:ENST00000657090.1:ENST00000453292.7:ENST00000306090.12:ENST00000472183.6:ENST00000462499.6:ENST00000482112.6:ENST00000663479.2:ENST00000490374.6:ENST00000467227.6:ENST00000676826.2:ENST00000371100.9:ENST00000371102.8:ENST00000464624.7:ENST00000349036.9:ENST00000488546.6:ENST00000667293.2:ENST00000481039.6:ENST00000467321.6:ENST00000477931.5:ENST00000485673.6:ENST00000470512.6:ENST00000464788.6:ENST00000469431.6:ENST00000604005.6:ENST00000478585.6:ENST00000480975.5:ENST00000480232.6:ENST00000683015.1:ENST00000461152.6:ENST00000371095.7:ENST00000265620.11:ENST00000354359.12:ENST00000371085.8:ENST00000468895.6:ENST00000682803.1:ENST00000488652.6:ENST00000476935.6:ENST00000492907.6:ENST00000603546.2:ENST00000684284.1:ENST00000682134.1:ENST00000682829.1:ENST00000487862.5:ENST00000496934.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	14	210	2	2.2827	2.4285050000000004	2.57431	7.45047e-4	4.31854e-4	0.0251072	0.0186563
chr21	46189813	46189912	7470465	0	-	0.585859	(0.57,1]	chr21	761438	11	UTR3	UTR3:EXON_MRNA:INTRON	LSS	ENSG00000160285.15	ENST00000356396.8:ENST00000397728.8:ENST00000491729.1:ENST00000419093.5:ENST00000457828.6:ENST00000474319.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	24	2	2.33295	2.4284999999999997	2.52405	0.0263139	0.0122896	0.133676	0.091087
chr8	99225291	99225391	3813400	0	+	0.59	(0.57,1]	chr8	353170	319	INTRON	INTRON	VPS13B	ENSG00000132549.20	ENST00000496144.5:ENST00000683334.1:ENST00000357162.7:ENST00000358544.7:ENST00000683619.1:ENST00000683869.1:ENST00000682153.1:ENST00000682358.1:ENST00000682145.1:ENST00000355155.6:ENST00000682234.1:ENST00000683486.1:ENST00000684308.1:ENST00000521932.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	24	2	2.33295	2.4284999999999997	2.52405	0.0263139	0.0122896	0.133676	0.091087
chr3	134204273	134204373	1823196	0	-	0.45	(0.44,0.476]	chr3	183460	10	INTRON	INTRON	RYK	ENSG00000163785.13	ENST00000623711.4:ENST00000460933.5:ENST00000620660.4:ENST00000464879.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	43	2	1.77101	2.4284600000000003	3.08591	0.0693975	0.00481262	0.184298	0.0638089
chr8	123027839	123027938	4041115	0	-	0.474747	(0.44,0.476]	chr8	368547	22	INTRON	INTRON	DERL1	ENSG00000136986.10	ENST00000259512.9:ENST00000405944.7:ENST00000524119.1:ENST00000419562.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	43	2	1.77101	2.4284600000000003	3.08591	0.0693975	0.00481262	0.184298	0.0638089
chr1	150845263	150845362	552670	0	-	0.343434	(0.32,0.35]	chr1	65000	24	INTRON	INTRON	ARNT	ENSG00000143437.21	ENST00000358595.10:ENST00000471844.6:ENST00000354396.6:ENST00000515192.5:ENST00000505755.5:ENST00000497108.6:ENST00000505979.5:ENST00000504358.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	50	2	1.77704	2.428395	3.07975	0.0719969	0.00554235	0.187322	0.0674105
chr5	72146902	72147002	2385977	0	+	0.34	(0.32,0.35]	chr5	230228	301	INTRON	INTRON	MAP1B	ENSG00000131711.15	ENST00000512974.5:ENST00000296755.12:ENST00000513526.6:ENST00000511641.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	50	2	1.77704	2.428395	3.07975	0.0719969	0.00554235	0.187322	0.0674105
chr14	96868892	96868991	5811595	0	+	0.525253	(0.515,0.57]	chr14	551089	41	EXON_MRNA	EXON_MRNA:INTRON	VRK1	ENSG00000100749.9	ENST00000553683.2:ENST00000680538.1:ENST00000681195.1:ENST00000681524.1:ENST00000680084.1:ENST00000679533.1:ENST00000681598.1:ENST00000679727.1:ENST00000679758.1:ENST00000679977.1:ENST00000680387.1:ENST00000680335.1:ENST00000680683.1:ENST00000681474.1:ENST00000216639.8:ENST00000681363.1:ENST00000681538.1:ENST00000680922.1:ENST00000679903.1:ENST00000681101.1:ENST00000681419.1:ENST00000679941.1:ENST00000680849.1:ENST00000679770.1:ENST00000681493.1:ENST00000681778.1:ENST00000680993.1:ENST00000681355.1:ENST00000681695.1:ENST00000681344.1:ENST00000680007.1:ENST00000679918.1:ENST00000679816.1:ENST00000680756.1:ENST00000681249.1:ENST00000680526.1:ENST00000679365.1:ENST00000680851.1:ENST00000679506.1:ENST00000679650.1:ENST00000679462.1:ENST00000680724.1:ENST00000681061.1:ENST00000681677.1:ENST00000679843.1:ENST00000555067.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	51	2	1.48539	2.42832	3.37125	0.0553982	0.00136343	0.165463	0.0339121
chr16	88778713	88778812	6540157	0	-	0.606061	(0.57,1]	chr16	633998	289	INTRON	INTRON	PIEZO1	ENSG00000103335.22	ENST00000301015.14	protein_coding	protein_coding	protein_coding	protein_coding	5	32	2	1.72406	2.4283	3.13254	0.0261443	0.00310655	0.122221	0.0512344
chr20	32793435	32793535	7256981	0	+	0.36	(0.35,0.378]	chr20	737170	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	DNMT3B	ENSG00000088305.19	ENST00000696232.1:ENST00000328111.6:ENST00000696231.1:ENST00000348286.6:ENST00000353855.6:ENST00000696233.1:ENST00000443239.7:ENST00000696235.1:ENST00000456297.6:ENST00000696236.1:ENST00000201963.3:ENST00000696238.1:ENST00000696239.1:ENST00000696240.1:ENST00000696241.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	73	2	1.91549	2.4283	2.94111	0.0104563	0.00887698	0.0855102	0.0849778
chr17	29281300	29281400	6747668	0	-	0.47	(0.44,0.476]	chr17	663228	134	INTRON	INTRON	NUFIP2	ENSG00000108256.9	ENST00000225388.9:ENST00000579665.1	protein_coding	protein_coding	protein_coding	protein_coding	3	43	2	1.96602	2.428245	2.89047	0.0426807	0.00955699	0.148082	0.0863913
chr8	140569917	140570016	4075905	0	-	0.464646	(0.44,0.476]	chr8	370265	69	INTRON	INTRON	AGO2	ENSG00000123908.12	ENST00000220592.10:ENST00000519980.5:ENST00000523609.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	43	2	1.96602	2.428245	2.89047	0.0426807	0.00955699	0.148082	0.0863913
chr7	152365270	152365370	3680586	0	-	0.53	(0.515,0.57]	chr7	341660	62	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000682301.1:ENST00000452749.2:ENST00000680867.1:ENST00000683800.1:ENST00000684278.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	38	2	2.34087	2.4282399999999997	2.51561	0.0469761	0.00635044	0.151917	0.0723103
chr7	6029332	6029432	3475936	0	-	0.49	(0.476,0.515]	chr7	325179	3	SS3_PROX	SS3_PROX:INTRON	EIF2AK1	ENSG00000086232.13	ENST00000199389.11	protein_coding	protein_coding	protein_coding	protein_coding	14	156	2	1.94192	2.428235	2.91455	0.0014343	4.32026e-4	0.0347139	0.0190829
chr15	69454010	69454107	6059124	0	+	0.43299	(0.408,0.44]	chr15	576838	4	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	RPLP1	ENSG00000137818.12	ENST00000357790.5:ENST00000260379.11:ENST00000487304.6:ENST00000560274.1:ENST00000488122.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	36	483	2	2.33846	2.42823	2.518	5.63806e-5	4.18298e-5	0.00655354	0.00524005
chr1	28907575	28907674	58885	0	+	0.454545	(0.44,0.476]	chr1	7617	134	INTRON	INTRON	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000647918.1:ENST00000646800.1:ENST00000644342.1:ENST00000646189.1:ENST00000482464.6:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000646260.1:ENST00000373798.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	69	2	2.42643	2.4281949999999997	2.42996	0.0104804	0.0033369	0.0855777	0.0528877
chr2	112660666	112660761	852221	0	+	0.305263	(0.28,0.32]	chr2	95607	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SLC20A1	ENSG00000144136.11	ENST00000272542.8:ENST00000490674.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	65	2	1.81152	2.428185	3.04485	0.034446	0.00894006	0.147767	0.0799922
chr2	159336145	159336243	1249680	0	-	0.22449	[0,0.28]	chr2	132531	31	INTRON	INTRON	BAZ2B	ENSG00000123636.19	ENST00000392782.5:ENST00000392783.7:ENST00000474437.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	75	2	1.59412	2.42811	3.2621000000000002	0.0729426	0.00367113	0.189278	0.056059199999999997
chr13	32611676	32611776	5465560	0	+	0.47	(0.44,0.476]	chr13	523717	247	INTRON	INTRON	PDS5B	ENSG00000083642.19	ENST00000315596.15:ENST00000482955.5:ENST00000498550.5:ENST00000450460.5:ENST00000493653.1:ENST00000466078.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	45	2	2.20949	2.42809	2.64669	0.0672585	0.0040295	0.183051	0.0578376
chrX	13341049	13341139	7622366	0	+	0.366667	(0.35,0.378]	chrX	780349	6	INTRON	INTRON	LINC01203	ENSG00000226985.7	ENST00000669963.1:ENST00000661545.1:ENST00000659526.1:ENST00000656410.1:ENST00000661104.1:ENST00000456091.2:ENST00000655502.1:ENST00000671651.1:ENST00000656979.1:ENST00000656271.1:ENST00000661629.1:ENST00000661464.1:ENST00000419566.5:ENST00000668192.1:ENST00000665887.1:ENST00000659191.1:ENST00000667868.1:ENST00000653729.1:ENST00000656111.1	lncRNA	lncRNA	lncRNA	lncRNA	5	76	2	2.13524	2.4280850000000003	2.72093	0.0130865	0.00314173	0.0934394	0.0514466
chrX	111687208	111687297	7702077	0	+	0.393258	(0.378,0.408]	chrX	788213	7	INTRON	INTRON	ALG13	ENSG00000101901.12	ENST00000487141.5:ENST00000371979.7:ENST00000394780.8:ENST00000251943.8:ENST00000610588.4:ENST00000621367.4:ENST00000622997.3:ENST00000624161.3:ENST00000636363.1:ENST00000624881.3:ENST00000468657.5:ENST00000473389.5:ENST00000482374.5:ENST00000492038.5:ENST00000495283.5:ENST00000486353.5:ENST00000623144.3:ENST00000470971.5:ENST00000489033.5:ENST00000623255.1:ENST00000623148.3:ENST00000471924.5:ENST00000436609.5:ENST00000482742.5:ENST00000623189.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	69	2	1.33751	2.428055	3.5186	0.0677318	8.45009e-4	0.18426	0.0263813
chr14	23065565	23065665	5842670	0	-	0.39	(0.378,0.408]	chr14	555592	2	SS5_PROX	SS5_PROX:INTRON	ACIN1	ENSG00000100813.15	ENST00000605057.6:ENST00000557515.5:ENST00000262710.5:ENST00000457657.5:ENST00000357481.6:ENST00000338631.10:ENST00000473758.5:ENST00000397341.7:ENST00000555053.5:ENST00000555566.1:ENST00000557039.1:ENST00000555807.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	15	207	2	2.27807	2.4280150000000003	2.57796	7.87251e-4	1.19999e-4	0.0258889	0.00938389
chr8	17229826	17229925	3921191	0	-	0.30303	(0.28,0.32]	chr8	358727	50	UTR3	UTR3:EXON_MRNA	CNOT7	ENSG00000198791.12	ENST00000361272.9	protein_coding	protein_coding	protein_coding	protein_coding	4	74	2	2.38391	2.42797	2.47203	0.0122525	0.0114089	0.0969406	0.0886611
chr3	177182290	177182390	1872297	0	-	0.59	(0.57,1]	chr3	187438	110	INTRON	INTRON	TBL1XR1	ENSG00000177565.18	ENST00000457928.7:ENST00000430069.5:ENST00000673974.1:ENST00000352800.10:ENST00000422442.6:ENST00000428970.5:ENST00000424913.5:ENST00000437738.5:ENST00000431421.5:ENST00000635794.1:ENST00000630796.2:ENST00000450267.5:ENST00000630833.2:ENST00000431674.5:ENST00000422066.5:ENST00000443315.5:ENST00000627825.2:ENST00000427349.5:ENST00000413084.5:ENST00000637137.1:ENST00000491623.2:ENST00000637544.1:ENST00000636187.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	10	69	2	2.34591	2.4278750000000002	2.50984	0.00182871	1.72558e-4	0.0386771	0.0113954
chr8	100949000	100949100	4005943	0	-	0.38	(0.378,0.408]	chr8	366680	1	SS3_PROX	SS3_PROX:INTRON	YWHAZ	ENSG00000164924.18	ENST00000395958.6:ENST00000395957.6:ENST00000457309.2:ENST00000395956.7:ENST00000353245.7:ENST00000521309.5:ENST00000395953.6:ENST00000395948.6:ENST00000395951.7:ENST00000419477.6:ENST00000480304.5:ENST00000518736.5:ENST00000517727.5:ENST00000521328.5:ENST00000418997.1:ENST00000437293.5:ENST00000523131.1:ENST00000523938.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	110	2	2.37292	2.427865	2.48281	0.00340454	0.00105162	0.0517761	0.0299022
chr11	62830057	62830157	4961713	0	-	0.45	(0.44,0.476]	chr11	467012	3	SS5_PROX	SS5_PROX:INTRON	STX5	ENSG00000162236.13	ENST00000294179.8:ENST00000377897.8:ENST00000394690.5:ENST00000492066.5:ENST00000491231.5:ENST00000488303.5:ENST00000486437.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	83	2	2.18344	2.427855	2.67227	0.0102102	0.0010793	0.0850389	0.0300133
chr11	748874	748974	4720347	0	+	0.47	(0.44,0.476]	chr11	436387	9	INTRON	INTRON	TALDO1	ENSG00000177156.11	ENST00000528070.5:ENST00000532685.1:ENST00000528097.5:ENST00000530440.1:ENST00000319006.8:ENST00000530119.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	158	2	2.23392	2.427785	2.62165	8.39954e-4	3.987e-4	0.0263691	0.0185763
chr3	197614818	197614915	1903903	0	-	0.319588	(0.28,0.32]	chr3	190733	9	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	SDHAP4	ENSG00000214135.9	ENST00000453454.5:ENST00000685600.1:ENST00000688268.1:ENST00000689716.1:ENST00000689038.1:ENST00000414207.5:ENST00000686003.1:ENST00000418868.6:ENST00000685331.1:ENST00000690701.1:ENST00000685536.1:ENST00000449003.6:ENST00000440535.5	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript	7	113	2	1.81786	2.427585	3.03731	0.0142986	0.0014867	0.104025	0.035
chr1	100400823	100400923	173113	0	+	0.28	[0,0.28]	chr1	18824	96	INTRON	INTRON	CDC14A	ENSG00000079335.20	ENST00000646665.1:ENST00000644844.1:ENST00000635056.2:ENST00000647005.1:ENST00000647203.1:ENST00000644676.1:ENST00000361544.11:ENST00000370124.8:ENST00000336454.5:ENST00000644813.1:ENST00000455467.6:ENST00000646563.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	104	2	2.1357	2.4275599999999997	2.71942	0.0338175	0.00139528	0.134476	0.0341592
chr3	47655514	47655613	1683785	0	-	0.494949	(0.476,0.515]	chr3	171996	164	INTRON	INTRON	SMARCC1	ENSG00000173473.11	ENST00000254480.10:ENST00000425518.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	105	2	1.93124	2.42755	2.92386	0.00916342	3.01132e-4	0.0812949	0.0155054
chr19	897940	898040	7110775	0	-	0.6	(0.57,1]	chr19	714141	4	SS3_PROX	SS3_PROX:INTRON	R3HDM4	ENSG00000198858.10	ENST00000589428.5:ENST00000361574.10:ENST00000587975.2:ENST00000591829.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	10	69	2	2.32807	2.427505	2.52694	9.96313e-4	3.10412e-4	0.0288906	0.0157993
chr7	99565004	99565104	3362758	0	+	0.41	(0.408,0.44]	chr7	314147	4	INTRON	INTRON	ZNF655	ENSG00000197343.11	ENST00000626122.2:ENST00000454654.5:ENST00000412636.5:ENST00000252713.9:ENST00000449244.5:ENST00000493947.5:ENST00000425063.5:ENST00000493277.5:ENST00000422164.5:ENST00000427931.5:ENST00000422647.5:ENST00000424881.5:ENST00000394163.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	59	2	1.6546400000000001	2.42749	3.20034	0.0329965	0.00398025	0.145298	0.0549214
chr17	67215099	67215198	6825524	0	-	0.474747	(0.44,0.476]	chr17	674529	113	INTRON	INTRON	HELZ	ENSG00000198265.12	ENST00000358691.10:ENST00000579953.5:ENST00000580168.5:ENST00000417253.7:ENST00000580662.5:ENST00000584641.5:ENST00000581159.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:non_stop_decay:nonsense_mediated_decay:processed_transcript	7	88	2	2.14532	2.42746	2.7096	0.00376205	0.00311081	0.0539118	0.0512673
chr1	206695386	206695485	302240	0	+	0.383838	(0.378,0.408]	chr1	34692	95	INTRON	INTRON	MAPKAPK2	ENSG00000162889.11	ENST00000367103.4:ENST00000294981.8	protein_coding	protein_coding	protein_coding	protein_coding	4	54	2	1.68393	2.42741	3.17089	0.0503034	0.00357279	0.156383	0.0548435
chr2	152709466	152709566	1246444	0	-	0.39	(0.378,0.408]	chr2	132360	145	INTRON	INTRON	PRPF40A	ENSG00000196504.20	ENST00000410080.8:ENST00000545856.8:ENST00000696382.1:ENST00000696381.1:ENST00000354363.11:ENST00000493468.7:ENST00000448428.2:ENST00000489741.1:ENST00000450303.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	54	2	1.68393	2.42741	3.17089	0.0503034	0.00357279	0.156383	0.0548435
chr11	68048242	68048332	4815735	0	+	0.366667	(0.35,0.378]	chr11	448698	4	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	TCIRG1	ENSG00000110719.10	ENST00000265686.8:ENST00000532635.5:ENST00000525724.5:ENST00000528981.5:ENST00000533005.5:ENST00000525516.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	63	2	2.4077	2.4273550000000004	2.44701	0.0122026	0.00900997	0.0910127	0.0851009
chr12	31318564	31318664	5302780	0	-	0.34	(0.32,0.35]	chr12	504668	131	INTRON	INTRON	SINHCAF	ENSG00000139146.14	ENST00000337682.9:ENST00000539409.5:ENST00000454658.6:ENST00000542983.1:ENST00000539004.5:ENST00000543615.1:ENST00000536836.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	113	2	1.56853	2.427345	3.28616	0.0291621	2.51931e-4	0.128055	0.0141209
chr3	37251200	37251294	1395833	0	+	0.382979	(0.378,0.408]	chr3	146314	2	SS3_PROX	SS3_PROX:INTRON	GOLGA4	ENSG00000144674.17	ENST00000435830.6:ENST00000444882.5:ENST00000356847.8:ENST00000450863.6:ENST00000361924.7:ENST00000429018.5:ENST00000431105.1:ENST00000419177.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	69	2	2.38873	2.427345	2.46596	0.0458857	0.00125753	0.149888	0.03295
chr21	44043209	44043309	7415343	0	+	0.46	(0.44,0.476]	chr21	755795	49	INTRON	INTRON	TRAPPC10	ENSG00000160218.13	ENST00000291574.9:ENST00000380221.7:ENST00000422875.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	115	2	2.20903	2.4273	2.64557	0.00158432	0.00143587	0.0363089	0.0347139
chr1	109349429	109349529	520525	0	-	0.44	(0.408,0.44]	chr1	61161	15	INTRON	INTRON	SORT1	ENSG00000134243.12	ENST00000538502.5:ENST00000256637.8	protein_coding	protein_coding	protein_coding	protein_coding	6	66	2	1.74813	2.42727	3.10641	0.0163902	0.00555646	0.109715	0.0648867
chr5	53958117	53958217	2617385	0	-	0.41	(0.408,0.44]	chr5	248835	461	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	163	2	2.36583	2.427245	2.48866	6.26455e-4	4.94802e-4	0.0225401	0.0206827
chr11	5469047	5469140	4897912	0	-	0.494624	(0.476,0.515]	chr11	459194	7	EXON_PSEUDO	EXON_PSEUDO:INTRON	HBG2:ENSG00000239920:HBE1:OR51B5:OR51A10P	ENSG00000196565.15:ENSG00000239920.2:ENSG00000213931.7:ENSG00000167355.8:ENSG00000230484.2	ENST00000380252.6:ENST00000380259.7:ENST00000292896.3:ENST00000380237.5:ENST00000420726.6:ENST00000420465.6:ENST00000415970.6:ENST00000418729.1:ENST00000307165.4	protein_coding	protein_coding	protein_coding:unitary_pseudogene	protein_coding:non_stop_decay:nonsense_mediated_decay:processed_transcript:unitary_pseudogene	14	180	2	2.13456	2.427205	2.71985	0.00108847	1.52058e-4	0.0303873	0.0106137
chr16	3685102	3685200	6434144	0	-	0.612245	(0.57,1]	chr16	619345	50	INTRON	INTRON	TRAP1	ENSG00000126602.11	ENST00000246957.10:ENST00000538171.5:ENST00000576335.5:ENST00000571804.5:ENST00000574941.5:ENST00000576106.5:ENST00000571538.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	37	2	1.83769	2.427205	3.01672	0.0297587	5.94133e-4	0.12908	0.0221865
chr4	25769918	25770017	2119679	0	-	0.484848	(0.476,0.515]	chr4	209374	17	INTRON	INTRON	SEL1L3	ENSG00000091490.11	ENST00000264868.9:ENST00000399878.8:ENST00000502949.5:ENST00000509290.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	51	2	1.80284	2.42718	3.05152	0.033161	0.0064848	0.145899	0.0699952
chr16	3704334	3704434	6434344	0	-	0.24	[0,0.28]	chr16	619374	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	TRAP1	ENSG00000126602.11	ENST00000246957.10:ENST00000538171.5:ENST00000571804.5:ENST00000574941.5:ENST00000576106.5:ENST00000571011.1:ENST00000570403.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	63	2	1.84147	2.42717	3.01287	0.0610416	0.0115634	0.193277	0.0889104
chr2	110663282	110663381	1206713	0	-	0.272727	[0,0.28]	chr2	128694	9	INTRON	INTRON	BUB1	ENSG00000169679.15	ENST00000302759.11:ENST00000535254.6:ENST00000409311.5:ENST00000466333.5:ENST00000666956.1:ENST00000465029.5:ENST00000477481.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	63	2	1.84147	2.42717	3.01287	0.0610416	0.0115634	0.193277	0.0889104
chr7	119821957	119822057	3629560	0	-	0.39	(0.378,0.408]	chr7	337335	207	INTRON	INTRON	LINC02476	ENSG00000225546.6	ENST00000660268.1:ENST00000431071.5:ENST00000426413.2	lncRNA	lncRNA	lncRNA	lncRNA	5	72	2	1.90812	2.427125	2.94613	0.0264295	0.00112461	0.122506	0.0308177
chr1	32818757	32818835	66570	0	+	0.307692	(0.28,0.32]	chr1	8527	4	EXON_LNCRNA	EXON_LNCRNA:INTRON	S100PBP	ENSG00000116497.18	ENST00000530710.5:ENST00000373476.5:ENST00000529027.5:ENST00000531123.5:ENST00000356689.7:ENST00000373475.10:ENST00000526230.1:ENST00000531256.1:ENST00000477248.1:ENST00000482212.1:ENST00000474103.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	76	2	1.54521	2.42707	3.30893	0.0548272	0.00260504	0.165463	0.0470772
chr5	57179598	57179697	2358111	0	+	0.50505	(0.476,0.515]	chr5	227562	28	INTRON	INTRON	GPBP1	ENSG00000062194.16	ENST00000424459.7:ENST00000514387.6:ENST00000506184.7:ENST00000511209.5	protein_coding	protein_coding	protein_coding	protein_coding	4	57	2	2.26789	2.4270199999999997	2.58615	0.0176567	0.00515536	0.105233	0.0650394
chr16	89440712	89440811	6543103	0	-	0.636364	(0.57,1]	chr16	634281	90	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	29	2	2.32017	2.427	2.53383	0.02547	0.00488159	0.12011	0.0640618
chr13	110685925	110686024	5649909	0	-	0.323232	(0.32,0.35]	chr13	538268	24	INTRON	INTRON	CARS2	ENSG00000134905.17	ENST00000257347.9:ENST00000535398.5:ENST00000465145.5:ENST00000539269.5:ENST00000544488.5:ENST00000541443.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	67	2	2.22429	2.426995	2.6297	0.0226421	0.00476699	0.117557	0.0636201
chr15	72263956	72264054	6219585	0	-	0.408163	(0.378,0.408]	chr15	593691	19	INTRON	INTRON	PARP6	ENSG00000137817.17	ENST00000569795.6:ENST00000287196.13:ENST00000413097.6:ENST00000260376.11:ENST00000616176.4:ENST00000565443.5:ENST00000544520.5:ENST00000567974.5:ENST00000564610.5:ENST00000567440.5:ENST00000419739.7:ENST00000565999.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	61	2	1.84831	2.426995	3.00568	0.0172621	0.00811866	0.111749	0.0766625
chr4	55872755	55872854	1961382	0	+	0.40404	(0.378,0.408]	chr4	196637	4	INTRON	INTRON	EXOC1	ENSG00000090989.18	ENST00000381295.7:ENST00000346134.11:ENST00000349598.6	protein_coding	protein_coding	protein_coding	protein_coding	5	61	2	1.84831	2.426995	3.00568	0.0172621	0.00811866	0.111749	0.0766625
chr11	75007473	75007571	4830612	0	+	0.479592	(0.476,0.515]	chr11	450730	11	UTR3	UTR3:EXON_MRNA:INTRON	NEU3	ENSG00000162139.10	ENST00000529024.1:ENST00000294064.9	protein_coding	protein_coding	protein_coding	protein_coding	4	57	2	2.31726	2.426985	2.53671	0.015077	0.00624027	0.0994339	0.0718843
chr1	245963599	245963699	675266	0	-	0.35	(0.32,0.35]	chr1	79709	76	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000493441.5:ENST00000488153.5:ENST00000492487.5:ENST00000391836.3:ENST00000464398.1:ENST00000453676.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	67	2	2.2664	2.426965	2.58753	0.0199969	0.00560122	0.109608	0.0678837
chr5	54409221	54409321	2354720	0	+	0.34	(0.32,0.35]	chr5	227095	3	INTRON	INTRON	LINC01033	ENSG00000249069.8	ENST00000653566.1:ENST00000655801.1:ENST00000654906.1:ENST00000659703.1:ENST00000662351.1:ENST00000523194.7:ENST00000665795.1:ENST00000667992.1:ENST00000657771.1:ENST00000658828.1:ENST00000670528.1:ENST00000657274.1:ENST00000504609.3	lncRNA	lncRNA	lncRNA	lncRNA	4	67	2	2.2664	2.426965	2.58753	0.0199969	0.00560122	0.109608	0.0678837
chr19	5705073	5705172	7124553	0	-	0.454545	(0.44,0.476]	chr19	717125	38	INTRON	INTRON	LONP1	ENSG00000196365.12	ENST00000360614.8:ENST00000587552.5:ENST00000540670.6:ENST00000593119.5:ENST00000585374.5:ENST00000590558.5:ENST00000590729.5:ENST00000590206.1:ENST00000588589.5:ENST00000587365.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	69	2	1.98938	2.42695	2.86452	0.0198602	0.00159222	0.109608	0.0367961
chr1	153642042	153642142	226789	0	+	0.44	(0.408,0.44]	chr1	25985	4	SS3_PROX	SS3_PROX:INTRON	CHTOP	ENSG00000160679.13	ENST00000368690.7:ENST00000614256.4:ENST00000368694.8:ENST00000495554.1:ENST00000403433.5:ENST00000368687.1:ENST00000368686.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	32	2	2.18807	2.42693	2.66579	0.0708044	0.019342	0.184528	0.119831
chr16	1679053	1679152	6275210	0	+	0.414141	(0.408,0.44]	chr16	599497	3	INTRON	INTRON	JPT2	ENSG00000206053.13	ENST00000569256.5:ENST00000567717.1:ENST00000562684.5:ENST00000248098.8:ENST00000561516.5:ENST00000382711.9:ENST00000566742.5:ENST00000569765.5:ENST00000566925.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	32	2	2.18807	2.42693	2.66579	0.0708044	0.019342	0.184528	0.119831
chr16	2703957	2704055	6279761	0	+	0.418367	(0.408,0.44]	chr16	600746	11	INTRON	INTRON	KCTD5	ENSG00000167977.9	ENST00000301738.9:ENST00000564195.1	protein_coding	protein_coding	protein_coding	protein_coding	2	32	2	2.18807	2.42693	2.66579	0.0708044	0.019342	0.184528	0.119831
chr2	197394867	197394965	1306591	0	-	0.418367	(0.408,0.44]	chr2	136634	13	INTRON	INTRON	SF3B1	ENSG00000115524.17	ENST00000652026.1:ENST00000652738.1:ENST00000335508.11:ENST00000470268.2:ENST00000424674.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	32	2	2.18807	2.42693	2.66579	0.0708044	0.019342	0.184528	0.119831
chr22	23248548	23248648	7483888	0	+	0.43	(0.408,0.44]	chr22	763547	52	INTRON	INTRON	BCR	ENSG00000186716.21	ENST00000479188.5:ENST00000359540.7:ENST00000305877.13:ENST00000463770.5:ENST00000487679.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	32	2	2.18807	2.42693	2.66579	0.0708044	0.019342	0.184528	0.119831
chr4	143340059	143340159	2054105	0	+	0.41	(0.408,0.44]	chr4	203717	24	INTRON	INTRON	GAB1	ENSG00000109458.9	ENST00000262995.8:ENST00000262994.9:ENST00000514639.5	protein_coding	protein_coding	protein_coding	protein_coding	2	32	2	2.18807	2.42693	2.66579	0.0708044	0.019342	0.184528	0.119831
chr7	140923665	140923765	3663723	0	-	0.44	(0.408,0.44]	chr7	340105	731	INTRON	INTRON	BRAF	ENSG00000157764.14	ENST00000496384.7:ENST00000644969.2:ENST00000646891.1:ENST00000644905.1:ENST00000642228.1:ENST00000288602.11:ENST00000646730.1:ENST00000497784.2:ENST00000642272.1:ENST00000642808.1:ENST00000643790.1:ENST00000469930.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	32	2	2.18807	2.42693	2.66579	0.0708044	0.019342	0.184528	0.119831
chr15	93017460	93017557	6104927	0	+	0.360825	(0.35,0.378]	chr15	581645	22	INTRON	INTRON	CHD2	ENSG00000173575.22	ENST00000626874.2:ENST00000394196.9:ENST00000625662.2:ENST00000627460.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	47	2	1.98929	2.4269	2.86451	0.0417909	0.0109111	0.147075	0.0923273
chr16	12740418	12740518	6447225	0	-	0.36	(0.35,0.378]	chr16	621153	350	INTRON	INTRON	CPPED1	ENSG00000103381.12	ENST00000381774.9:ENST00000433677.6:ENST00000261660.4	protein_coding	protein_coding	protein_coding	protein_coding	3	47	2	1.98929	2.4269	2.86451	0.0417909	0.0109111	0.147075	0.0923273
chr7	107541125	107541225	3612798	0	-	0.35	(0.32,0.35]	chr7	336704	134	INTRON	INTRON	COG5	ENSG00000164597.15	ENST00000297135.9:ENST00000347053.8:ENST00000393603.7:ENST00000475638.6:ENST00000605888.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	76	2	1.50258	2.42687	3.35116	0.0399817	0.00283808	0.161534	0.0473151
chr17	82622996	82623095	6853429	0	-	0.323232	(0.32,0.35]	chr17	679349	8	INTRON	INTRON	WDR45B	ENSG00000141580.16	ENST00000392325.9:ENST00000572583.5:ENST00000573656.5:ENST00000571835.5:ENST00000573616.5:ENST00000571767.5:ENST00000571817.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	70	2	2.05666	2.4268650000000003	2.79707	0.0170923	0.00840213	0.104099	0.0824581
chr18	9497311	9497411	6871352	0	+	0.33	(0.32,0.35]	chr18	680716	175	INTRON	INTRON	RALBP1	ENSG00000017797.13	ENST00000019317.8:ENST00000585015.6:ENST00000383432.8:ENST00000609094.2:ENST00000458039.3:ENST00000577221.1	protein_coding	protein_coding	protein_coding	protein_coding	5	70	2	2.05666	2.4268650000000003	2.79707	0.0170923	0.00840213	0.104099	0.0824581
chr2	58182041	58182141	1126144	0	-	0.3	(0.28,0.32]	chr2	120899	93	INTRON	INTRON	FANCL	ENSG00000115392.13	ENST00000696400.1:ENST00000403295.8:ENST00000696492.1:ENST00000427708.7:ENST00000696314.1:ENST00000696315.1:ENST00000696454.1:ENST00000696508.1:ENST00000696548.1:ENST00000696542.1:ENST00000696432.1:ENST00000696319.1:ENST00000403676.6:ENST00000696433.1:ENST00000696434.1:ENST00000696499.1:ENST00000696564.1:ENST00000402135.8:ENST00000696546.1:ENST00000233741.9:ENST00000696316.1:ENST00000696378.1:ENST00000696435.1:ENST00000696493.1:ENST00000696543.1:ENST00000696544.1:ENST00000696545.1:ENST00000696565.1:ENST00000696620.1:ENST00000696621.1:ENST00000696635.1:ENST00000696364.1:ENST00000696634.1:ENST00000696619.1:ENST00000696317.1:ENST00000696622.1:ENST00000696467.1:ENST00000696547.1:ENST00000449070.6:ENST00000696305.1:ENST00000417361.2:ENST00000696338.1:ENST00000696361.1:ENST00000696318.1:ENST00000696371.1:ENST00000696409.1:ENST00000696410.1:ENST00000696455.1:ENST00000696468.1:ENST00000696527.1:ENST00000696567.1:ENST00000696324.1:ENST00000696566.1:ENST00000696623.1:ENST00000446381.6:ENST00000696469.1:ENST00000696624.1:ENST00000696411.1:ENST00000696475.1:ENST00000470506.2:ENST00000696358.1:ENST00000696373.1:ENST00000696394.1:ENST00000696320.1:ENST00000696339.1:ENST00000696395.1:ENST00000696341.1:ENST00000696340.1:ENST00000696374.1:ENST00000696396.1:ENST00000696412.1:ENST00000696342.1:ENST00000696325.1:ENST00000696399.1:ENST00000696398.1:ENST00000696306.1:ENST00000696397.1:ENST00000696360.1:ENST00000696344.1:ENST00000696343.1:ENST00000696637.1:ENST00000696362.1:ENST00000696528.1:ENST00000696497.1:ENST00000696326.1:ENST00000696638.1:ENST00000696625.1:ENST00000696510.1:ENST00000696438.1:ENST00000696496.1:ENST00000696509.1:ENST00000696569.1:ENST00000696457.1:ENST00000696458.1:ENST00000696473.1:ENST00000696495.1:ENST00000696415.1:ENST00000696472.1:ENST00000696494.1:ENST00000696363.1:ENST00000696414.1:ENST00000696529.1:ENST00000696471.1:ENST00000696459.1:ENST00000696498.1:ENST00000696532.1:ENST00000696416.1:ENST00000696530.1:ENST00000696460.1:ENST00000696570.1:ENST00000696531.1:ENST00000696307.1:ENST00000696401.1:ENST00000696345.1:ENST00000696377.1:ENST00000696417.1:ENST00000696594.1:ENST00000696595.1:ENST00000696379.1:ENST00000696346.1:ENST00000696380.1:ENST00000696347.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	40	2	2.39347	2.426825	2.46018	0.0504457	0.0375904	0.156383	0.156054
chr3	196747052	196747151	1595565	0	+	0.282828	(0.28,0.32]	chr3	165300	65	INTRON	INTRON	PAK2	ENSG00000180370.10	ENST00000327134.7	protein_coding	protein_coding	protein_coding	protein_coding	2	40	2	2.39347	2.426825	2.46018	0.0504457	0.0375904	0.156383	0.156054
chr9	135952184	135952283	4372477	0	-	0.565657	(0.515,0.57]	chr9	402541	39	INTRON	INTRON	UBAC1	ENSG00000130560.9	ENST00000371756.4:ENST00000478485.1:ENST00000486258.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	14	132	2	1.37114	2.426805	3.48247	0.021537	7.62717e-6	0.114627	0.00197283
chr1	8793387	8793487	373542	0	-	0.42	(0.408,0.44]	chr1	43555	4	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000656437.1:ENST00000659924.1	protein_coding	protein_coding	protein_coding	protein_coding	2	32	2	2.36073	2.4266550000000002	2.49258	0.0481658	0.0314608	0.153019	0.144381
chr11	47514664	47514749	4950015	0	-	0.411765	(0.408,0.44]	chr11	464235	3	SS5_PROX	SS5_PROX:INTRON	CELF1:ENSG00000270072	ENSG00000149187.19:ENSG00000270072.1	ENST00000310513.10:ENST00000687097.1:ENST00000531165.5:ENST00000532048.5:ENST00000530151.5:ENST00000525841.5:ENST00000528434.5:ENST00000543178.5:ENST00000526419.1:ENST00000528538.5:ENST00000526277.1:ENST00000366360.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	2	32	2	2.36073	2.4266550000000002	2.49258	0.0481658	0.0314608	0.153019	0.144381
chr13	111280921	111281015	5545991	0	+	0.425532	(0.408,0.44]	chr13	529865	3	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	ARHGEF7	ENSG00000102606.19	ENST00000317133.9:ENST00000375739.6:ENST00000375741.6:ENST00000646102.2:ENST00000469877.5:ENST00000466143.5:ENST00000218789.9:ENST00000375736.8:ENST00000426073.6:ENST00000375723.5:ENST00000478679.5:ENST00000544132.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	32	2	2.36073	2.4266550000000002	2.49258	0.0481658	0.0314608	0.153019	0.144381
chr22	21509541	21509641	7560186	0	-	0.44	(0.408,0.44]	chr22	773318	171	INTRON	INTRON	PI4KAP2	ENSG00000183506.17	ENST00000450651.5:ENST00000467443.5:ENST00000479693.1:ENST00000476537.1:ENST00000491562.5	transcribed_unitary_pseudogene	retained_intron	transcribed_unitary_pseudogene	retained_intron:processed_transcript	2	32	2	2.36073	2.4266550000000002	2.49258	0.0481658	0.0314608	0.153019	0.144381
chr1	6522521	6522619	367791	0	-	0.438776	(0.408,0.44]	chr1	43178	13	UTR3	UTR3:EXON_MRNA	NOL9	ENSG00000162408.11	ENST00000377705.6	protein_coding	protein_coding	protein_coding	protein_coding	21	286	2	2.29389	2.426625	2.55936	2.30552e-4	6.95835e-5	0.0133982	0.00743778
chr19	21168355	21168450	7040223	0	+	0.421053	(0.408,0.44]	chr19	701943	3	INTRON	INTRON	ZNF431	ENSG00000196705.8	ENST00000600692.5:ENST00000599296.5:ENST00000594425.5:ENST00000311048.11:ENST00000598331.1	protein_coding	protein_coding	protein_coding	protein_coding	6	81	2	1.84301	2.426555	3.0101	0.0174311	0.00109848	0.112689	0.0304585
chr20	32401509	32401609	7256258	0	+	0.48	(0.476,0.515]	chr20	737076	291	INTRON	INTRON	ASXL1	ENSG00000171456.21	ENST00000651418.1:ENST00000375687.10:ENST00000613218.4:ENST00000644587.1:ENST00000620121.4:ENST00000646985.1:ENST00000643168.1:ENST00000306058.9:ENST00000645688.1:ENST00000470145.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	70	2	1.7425	2.426355	3.11021	0.0417334	5.02606e-4	0.147007	0.020217099999999998
chr11	2945410	2945508	4891502	0	-	0.336735	(0.32,0.35]	chr11	458257	11	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	NAP1L4	ENSG00000205531.13	ENST00000620138.4:ENST00000380542.9:ENST00000469805.5:ENST00000469089.5:ENST00000526115.5:ENST00000492594.6:ENST00000526023.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	11	156	2	1.60167	2.4263399999999997	3.25101	0.0179272	6.22233e-5	0.106518	0.00655977
chr2	135747557	135747657	875988	0	+	0.36	(0.35,0.378]	chr2	98053	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	UBXN4	ENSG00000144224.17	ENST00000415164.5:ENST00000426921.5:ENST00000272638.14:ENST00000416538.5:ENST00000467065.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	56	2	2.07049	2.426305	2.78212	0.0168532	0.0140397	0.103549	0.102801
chr3	48080677	48080777	1687418	0	-	0.52	(0.515,0.57]	chr3	172280	644	INTRON	INTRON	MAP4	ENSG00000047849.22	ENST00000395734.7:ENST00000426837.6:ENST00000360240.10:ENST00000423088.5:ENST00000439356.2:ENST00000468075.2	protein_coding	protein_coding	protein_coding	protein_coding	3	37	2	1.94945	2.4262799999999998	2.90311	0.0414068	0.0094233	0.161557	0.0817766
chr6	20466855	20466955	2828099	0	+	0.56	(0.515,0.57]	chr6	265583	268	INTRON	INTRON	E2F3	ENSG00000112242.16	ENST00000346618.8:ENST00000535432.2	protein_coding	protein_coding	protein_coding	protein_coding	3	37	2	1.94945	2.4262799999999998	2.90311	0.0414068	0.0094233	0.161557	0.0817766
chr9	91946307	91946407	4285229	0	-	0.55	(0.515,0.57]	chr9	393926	220	INTRON	INTRON	ROR2	ENSG00000169071.15	ENST00000375715.5:ENST00000375708.4:ENST00000495386.5:ENST00000546883.1:ENST00000476440.1:ENST00000493846.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	37	2	1.94945	2.4262799999999998	2.90311	0.0414068	0.0094233	0.161557	0.0817766
chr15	63814032	63814132	6200706	0	-	0.28	[0,0.28]	chr15	591445	331	INTRON	INTRON	HERC1	ENSG00000103657.14	ENST00000443617.7:ENST00000561400.1:ENST00000559886.1:ENST00000558532.1:ENST00000560462.1:ENST00000560316.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	119	2	1.35209	2.426205	3.50032	0.0403713	0.00245166	0.161534	0.0446188
chr15	90220481	90220581	6098299	0	+	0.56	(0.515,0.57]	chr15	580449	1	SS3_PROX	SS3_PROX:INTRON	SEMA4B	ENSG00000185033.15	ENST00000561085.1:ENST00000332496.10:ENST00000411539.7:ENST00000560089.5:ENST00000558051.2:ENST00000558065.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	51	2	1.53845	2.426165	3.31388	0.0475376	0.00174704	0.153019	0.0386026
chr7	128484173	128484271	3407147	0	+	0.306122	(0.28,0.32]	chr7	318292	9	INTRON	INTRON	ENSG00000273184:METTL2B	ENSG00000273184.1:ENSG00000165055.16	ENST00000462662.1:ENST00000482555.5:ENST00000262432.13:ENST00000497665.5:ENST00000480046.5:ENST00000419443.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA	3	54	2	2.0243	2.4259950000000003	2.82769	0.0364967	0.0169391	0.153759	0.103888
chr8	90425386	90425485	3794352	0	+	0.474747	(0.44,0.476]	chr8	351800	162	INTRON	INTRON	LINC00534	ENSG00000253394.7	ENST00000655523.1:ENST00000658299.1:ENST00000663329.1:ENST00000658342.1:ENST00000655219.1:ENST00000662692.1:ENST00000667296.1:ENST00000667565.1:ENST00000653734.1:ENST00000654785.1:ENST00000524361.5:ENST00000668745.1:ENST00000661519.1:ENST00000671657.1:ENST00000655123.1:ENST00000670903.1:ENST00000654946.1	lncRNA	lncRNA	lncRNA	lncRNA	4	52	2	2.1762	2.42596	2.67572	0.0212064	0.0092251	0.113017	0.0855292
chr2	131212469	131212567	865483	0	+	0.387755	(0.378,0.408]	chr2	97182	9	INTRON	INTRON	PLEKHB2:POTEE	ENSG00000115762.17:ENSG00000188219.16	ENST00000404460.5:ENST00000683005.1	protein_coding	protein_coding	protein_coding	protein_coding	4	54	2	1.65821	2.425945	3.19368	0.0506302	0.00426861	0.17547	0.0573912
chr4	152530657	152530753	2275036	0	-	0.385417	(0.378,0.408]	chr4	221125	5	EXON_LNCRNA	EXON_LNCRNA:INTRON	FBXW7	ENSG00000109670.16	ENST00000281708.10:ENST00000603548.6:ENST00000604872.6:ENST00000647166.1:ENST00000643834.1:ENST00000642901.1:ENST00000604095.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	54	2	1.65821	2.425945	3.19368	0.0506302	0.00426861	0.17547	0.0573912
chr8	73812918	73813017	3971598	0	-	0.545455	(0.515,0.57]	chr8	364235	19	INTRON	INTRON	ENSG00000258677:UBE2W	ENSG00000258677.2:ENSG00000104343.21	ENST00000358757.5:ENST00000523278.5:ENST00000602593.6:ENST00000517608.5:ENST00000650817.1:ENST00000422906.6:ENST00000419880.7:ENST00000651945.1:ENST00000519277.5:ENST00000519255.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	68	2	1.89462	2.42594	2.9572600000000002	0.0139002	0.00108918	0.10247	0.0303873
chr2	38564537	38564637	1099379	0	-	0.43	(0.408,0.44]	chr2	117894	3	SS3_PROX	SS3_PROX:INTRON	HNRNPLL	ENSG00000143889.16	ENST00000449105.8:ENST00000409636.5:ENST00000358367.8:ENST00000608859.5:ENST00000378915.7:ENST00000272249.7:ENST00000409328.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	80	2	1.66104	2.4258450000000003	3.19065	0.0349715	3.2984e-4	0.13747500000000001	0.0161352
chr11	57767826	57767926	4793191	0	+	0.46	(0.44,0.476]	chr11	443717	33	INTRON	INTRON	ENSG00000288534:CTNND1	ENSG00000288534.1:ENSG00000198561.16	ENST00000673781.1:ENST00000673810.1:ENST00000674116.1:ENST00000674060.1:ENST00000524630.5:ENST00000529919.5:ENST00000533189.1:ENST00000682741.1:ENST00000358694.10:ENST00000361332.8:ENST00000361391.10:ENST00000361796.9:ENST00000415361.6:ENST00000426142.6:ENST00000428599.6:ENST00000525902.5:ENST00000526357.5:ENST00000526772.5:ENST00000527467.5:ENST00000528232.5:ENST00000528621.5:ENST00000529526.5:ENST00000529873.5:ENST00000529986.5:ENST00000530094.5:ENST00000530748.5:ENST00000531014.5:ENST00000532245.5:ENST00000532463.5:ENST00000532649.5:ENST00000532787.5:ENST00000532844.5:ENST00000533667.5:ENST00000534579.5:ENST00000399050.10:ENST00000526938.5:ENST00000531007.2:ENST00000674015.1:ENST00000673826.1:ENST00000673683.1:ENST00000674106.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	147	2	1.81578	2.4258	3.03582	0.00330163	2.42052e-4	0.0527031	0.0143235
chr19	16642638	16642735	7150608	0	-	0.412371	(0.408,0.44]	chr19	722442	8	INTRON	INTRON	SMIM7	ENSG00000214046.9	ENST00000465250.6:ENST00000481671.6:ENST00000594662.5:ENST00000597781.5:ENST00000598278.5:ENST00000593409.5	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	8	106	2	2.20396	2.425775	2.64759	0.00235889	0.0016061	0.0445848	0.0364977
chr10	21546538	21546637	4404532	0	+	0.535354	(0.515,0.57]	chr10	406427	48	INTRON	INTRON	MLLT10	ENSG00000078403.17	ENST00000651097.1:ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000377100.8:ENST00000377091.7:ENST00000650772.1:ENST00000651298.1:ENST00000652497.1:ENST00000495130.5:ENST00000377059.7:ENST00000621220.4:ENST00000476557.5:ENST00000462999.5:ENST00000430455.2:ENST00000479634.1:ENST00000480415.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	68	2	1.68687	2.42571	3.16455	0.0300837	3.23741e-4	0.129186	0.0159645
chr4	122322934	122323033	2034327	0	+	0.464646	(0.44,0.476]	chr4	202143	43	INTRON	INTRON	KIAA1109	ENSG00000138688.17	ENST00000679879.1:ENST00000264501.8:ENST00000684987.1:ENST00000693420.1:ENST00000693334.1:ENST00000690536.1:ENST00000388738.8:ENST00000419325.5:ENST00000686093.1:ENST00000688248.1:ENST00000686836.1:ENST00000688823.1:ENST00000438707.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	43	2	2.39003	2.42569	2.46135	0.0374637	0.0106488	0.140008	0.0915714
chr7	6264181	6264281	3477300	0	-	0.47	(0.44,0.476]	chr7	325332	516	INTRON	INTRON	CYTH3	ENSG00000008256.16	ENST00000396741.3:ENST00000350796.8:ENST00000482460.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	43	2	2.39003	2.42569	2.46135	0.0374637	0.0106488	0.140008	0.0915714
chrX	71533201	71533299	7679941	0	+	0.520408	(0.515,0.57]	chrX	786371	2	UTR5	UTR5:EXON_MRNA	OGT	ENSG00000147162.14	ENST00000373719.8:ENST00000488174.5:ENST00000373701.7:ENST00000472270.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	17	174	2	2.01808	2.42567	2.83326	6.29259e-4	8.26788e-5	0.0226349	0.00812487
chr7	6261684	6261784	3477275	0	-	0.35	(0.32,0.35]	chr7	325332	491	INTRON	INTRON	CYTH3	ENSG00000008256.16	ENST00000396741.3:ENST00000350796.8:ENST00000482460.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	38	2	2.21917	2.4256349999999998	2.6321	0.0641245	0.0268	0.199279	0.123349
chr5	181057461	181057558	2563022	0	+	0.360825	(0.35,0.378]	chr5	245228	4	INTRON	INTRON	BTNL9	ENSG00000165810.17	ENST00000327705.14:ENST00000512570.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	92	2	1.99351	2.425575	2.85764	0.020841	4.6759e-4	0.111648	0.0195867
chr21	6663647	6663746	7425810	0	-	0.383838	(0.378,0.408]	chr21	757499	37	INTRON	INTRON	ENSG00000280145	ENSG00000280145.3	ENST00000625185.3:ENST00000624846.3:ENST00000623313.1:ENST00000624965.1	lncRNA	lncRNA	lncRNA	lncRNA	3	45	2	1.89621	2.4254	2.95459	0.0488044	0.00957623	0.173377	0.0820838
chr8	73867468	73867568	3972146	0	-	0.44	(0.408,0.44]	chr8	364247	366	INTRON	INTRON	ENSG00000258677:UBE2W	ENSG00000258677.2:ENSG00000104343.21	ENST00000358757.5:ENST00000602593.6:ENST00000517608.5:ENST00000650817.1:ENST00000422906.6:ENST00000419880.7:ENST00000651945.1:ENST00000519277.5:ENST00000519255.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	60	2	1.53812	2.425345	3.31257	0.0501609	0.00198621	0.156383	0.0411469
chr15	49222828	49222928	6019644	0	+	0.41	(0.408,0.44]	chr15	573708	3	SS3_PROX	SS3_PROX:INTRON	GALK2	ENSG00000156958.15	ENST00000559883.5:ENST00000559963.5:ENST00000327171.7:ENST00000560654.5:ENST00000558775.5:ENST00000559040.1:ENST00000396509.6:ENST00000558956.5:ENST00000559208.5:ENST00000560031.6:ENST00000560119.5:ENST00000558145.5:ENST00000544523.5:ENST00000560138.5:ENST00000559423.5:ENST00000559454.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	52	2	2.13157	2.4253400000000003	2.71911	0.0189489	0.0109031	0.108861	0.0923273
chr20	1456714	1456808	7305533	0	-	0.287234	(0.28,0.32]	chr20	743742	10	EXON_LNCRNA	EXON_LNCRNA:INTRON	NSFL1C	ENSG00000088833.18	ENST00000476071.5:ENST00000555944.5:ENST00000353088.6:ENST00000461211.5:ENST00000216879.9:ENST00000381653.9:ENST00000555568.5:ENST00000470376.5:ENST00000553571.5:ENST00000489203.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	77	2	2.13651	2.4253299999999998	2.71415	0.0265696	0.005045	0.134088	0.0621586
chr3	141985471	141985571	1833793	0	-	0.37	(0.35,0.378]	chr3	184307	64	INTRON	INTRON	TFDP2	ENSG00000114126.18	ENST00000489671.6:ENST00000499676.5:ENST00000486111.5:ENST00000477292.5:ENST00000495310.5:ENST00000467072.5:ENST00000487734.5:ENST00000479040.5:ENST00000467667.5:ENST00000478006.5:ENST00000497579.5:ENST00000492919.1:ENST00000464782.5:ENST00000488107.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	86	2	2.11889	2.425265	2.73164	0.00625927	0.00387645	0.0720609	0.0543578
chr11	77617863	77617959	4994133	0	-	0.395833	(0.378,0.408]	chr11	471902	8	INTRON	INTRON	CLNS1A	ENSG00000074201.9	ENST00000526761.5:ENST00000525428.6:ENST00000525064.5:ENST00000263309.7:ENST00000526009.5:ENST00000532069.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	83	2	1.9808	2.425175	2.86955	0.0123757	0.00159247	0.0916369	0.0367961
chr10	120876088	120876186	4531603	0	+	0.44898	(0.44,0.476]	chr10	418140	18	INTRON	INTRON	WDR11	ENSG00000120008.16	ENST00000263461.11:ENST00000605543.5:ENST00000604585.5:ENST00000497136.6:ENST00000604220.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	43	2	1.93084	2.42517	2.9195	0.0443175	0.0102021	0.162302	0.0850389
chrX	123611916	123612016	7877800	0	-	0.32	(0.28,0.32]	chrX	802405	4	SS3_PROX	SS3_PROX:INTRON	THOC2	ENSG00000125676.20	ENST00000448128.5:ENST00000245838.13:ENST00000441692.5:ENST00000492203.1:ENST00000497887.5:ENST00000618150.4:ENST00000432353.5:ENST00000455053.5:ENST00000355725.8:ENST00000416618.5:ENST00000491737.5:ENST00000464992.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	155	2	2.29816	2.42517	2.55218	0.00479572	5.71394e-4	0.0602209	0.0217398
chr5	72910411	72910510	2388097	0	+	0.373737	(0.35,0.378]	chr5	230509	18	UTR3	UTR3:EXON_MRNA	TNPO1	ENSG00000083312.19	ENST00000680533.1:ENST00000337273.10:ENST00000680025.1:ENST00000681711.1:ENST00000679378.1:ENST00000680111.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	144	2	2.29589	2.42515	2.55441	0.00126698	0.0010079	0.0325433	0.0292743
chr1	35600226	35600324	421899	0	-	0.326531	(0.32,0.35]	chr1	50842	8	UTR3	UTR3:EXON_MRNA	PSMB2	ENSG00000126067.12	ENST00000373237.4:ENST00000621781.4	protein_coding	protein_coding	protein_coding	protein_coding	3	50	2	1.95271	2.42507	2.89743	0.0431213	0.0127608	0.162255	0.0926667
chr11	75007669	75007767	4830614	0	+	0.397959	(0.378,0.408]	chr11	450730	13	UTR3	UTR3:EXON_MRNA:INTRON	NEU3	ENSG00000162139.10	ENST00000529024.1:ENST00000294064.9	protein_coding	protein_coding	protein_coding	protein_coding	7	92	2	1.78414	2.42506	3.06598	0.0144669	9.11854e-4	0.105142	0.0278396
chr22	40332815	40332915	7519759	0	+	0.25	[0,0.28]	chr22	768233	97	UTR3	UTR3:EXON_MRNA	TNRC6B	ENSG00000100354.21	ENST00000301923.13:ENST00000454349.7:ENST00000335727.13	protein_coding	protein_coding	protein_coding	protein_coding	3	62	2	1.94204	2.425005	2.90797	0.0544139	0.0118539	0.164972	0.0962115
chr7	75371226	75371326	3337781	0	+	0.42	(0.408,0.44]	chr7	310752	37	INTRON	INTRON	STAG3L1	ENSG00000205583.14	ENST00000619870.4:ENST00000404291.3	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	13	148	2	1.75993	2.42496	3.08999	0.0043403	1.89472e-4	0.0601329	0.0125683
chr21	33449265	33449362	7440663	0	-	0.453608	(0.44,0.476]	chr21	759328	6	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TMEM50B	ENSG00000142188.17	ENST00000420455.5:ENST00000470682.5:ENST00000542230.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	10	135	2	2.2193	2.424945	2.63059	0.00896114	8.18387e-5	0.0800073	0.00758404
chr12	69253354	69253454	5163641	0	+	0.33	(0.32,0.35]	chr12	489006	2	SS5_PROX	SS5_PROX:INTRON	CPSF6	ENSG00000111605.18	ENST00000435070.7:ENST00000650046.1:ENST00000456847.7:ENST00000266679.8:ENST00000550987.5:ENST00000551516.1:ENST00000547486.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	50	2	1.94202	2.42494	2.90786	0.0486128	0.00993008	0.153946	0.0877296
chr3	150435101	150435201	1533697	0	+	0.48	(0.476,0.515]	chr3	159811	116	INTRON	INTRON	TSC22D2	ENSG00000196428.13	ENST00000361875.8:ENST00000688009.1:ENST00000480589.1:ENST00000466814.1:ENST00000485421.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	88	2	2.18874	2.42493	2.66112	0.0044598	0.00255859	0.0592169	0.0466761
chr1	43674457	43674556	85736	0	+	0.383838	(0.378,0.408]	chr1	11569	22	INTRON	INTRON	KDM4A	ENSG00000066135.13	ENST00000372396.4	protein_coding	protein_coding	protein_coding	protein_coding	6	82	2	2.256	2.4249	2.5938	0.00614976	0.00336115	0.0676501	0.0532154
chr3	33834154	33834254	1394755	0	+	0.55	(0.515,0.57]	chr3	146077	48	INTRON	INTRON	PDCD6IP	ENSG00000170248.15	ENST00000457054.6:ENST00000648706.1:ENST00000307296.8:ENST00000412887.5:ENST00000482561.1:ENST00000487821.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	94	2	2.02107	2.4249	2.82873	0.00910188	1.44832e-4	0.0809976	0.0104652
chr10	21603834	21603934	4405115	0	+	0.37	(0.35,0.378]	chr10	406466	80	INTRON	INTRON	MLLT10	ENSG00000078403.17	ENST00000651097.1:ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000650772.1:ENST00000651298.1:ENST00000495130.5:ENST00000377059.7:ENST00000652258.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	119	2	2.13131	2.42489	2.71847	0.00741515	3.66214e-4	0.0744307	0.0171615
chr4	127942658	127942756	2238338	0	-	0.255102	[0,0.28]	chr4	219086	1	INTRON	INTRON	MFSD8	ENSG00000164073.11	ENST00000296468.8:ENST00000641686.2:ENST00000641186.1:ENST00000641774.1:ENST00000641748.1:ENST00000641508.1:ENST00000641690.1:ENST00000641928.1:ENST00000641464.1:ENST00000641092.1:ENST00000641397.1:ENST00000641393.1:ENST00000641025.1:ENST00000641509.1:ENST00000642034.1:ENST00000641178.1:ENST00000641147.1:ENST00000641753.1:ENST00000641434.1:ENST00000641482.1:ENST00000641133.1:ENST00000515130.6:ENST00000641332.1:ENST00000641870.1:ENST00000641949.1:ENST00000641228.1:ENST00000641590.1:ENST00000641843.1:ENST00000642078.1:ENST00000641882.1:ENST00000641742.1:ENST00000641658.1:ENST00000513559.6:ENST00000509826.2:ENST00000642042.1:ENST00000641340.1:ENST00000641538.1:ENST00000641369.1:ENST00000642121.1:ENST00000641243.1:ENST00000505284.6:ENST00000641134.1:ENST00000641695.1:ENST00000641503.1:ENST00000641743.1:ENST00000641776.1:ENST00000641264.1:ENST00000642143.1:ENST00000508441.2:ENST00000641558.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	184	2	1.51415	2.4246250000000003	3.3351	0.035048	7.06719e-5	0.137535	0.00695475
chr12	79872007	79872107	5375901	0	-	0.35	(0.32,0.35]	chr12	512785	227	INTRON	INTRON	PPP1R12A	ENSG00000058272.19	ENST00000261207.9:ENST00000450142.7:ENST00000437004.6:ENST00000546369.5:ENST00000550107.5:ENST00000547330.5:ENST00000550510.5:ENST00000548318.1	protein_coding	protein_coding	protein_coding	protein_coding	3	51	2	1.81328	2.424625	3.03597	0.0615716	0.00832487	0.193423	0.0774402
chr17	60196184	60196283	6803878	0	-	0.525253	(0.515,0.57]	chr17	672199	29	INTRON	INTRON	USP32	ENSG00000170832.13	ENST00000300896.9:ENST00000592339.5	protein_coding	protein_coding	protein_coding	protein_coding	3	37	2	2.01737	2.424625	2.83188	0.0352218	0.0108207	0.137535	0.0920575
chr2	27034855	27034944	716508	0	+	0.561798	(0.515,0.57]	chr2	82751	2	SS3_PROX	SS3_PROX:INTRON	TMEM214	ENSG00000119777.20	ENST00000495312.1:ENST00000321326.11:ENST00000435172.6:ENST00000238788.14:ENST00000404032.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	37	2	2.01737	2.424625	2.83188	0.0352218	0.0108207	0.137535	0.0920575
chr1	26744468	26744568	51661	0	+	0.44	(0.408,0.44]	chr1	6565	113	INTRON	INTRON	ARID1A	ENSG00000117713.21	ENST00000430799.7:ENST00000324856.13:ENST00000457599.6:ENST00000374152.7:ENST00000636219.1	protein_coding	protein_coding	protein_coding	protein_coding	3	43	2	2.33431	2.424615	2.51492	0.0329839	0.0129219	0.133816	0.0990564
chr16	47506878	47506978	6343759	0	+	0.41	(0.408,0.44]	chr16	608867	34	INTRON	INTRON	PHKB	ENSG00000102893.17	ENST00000566037.6:ENST00000566044.5:ENST00000299167.12:ENST00000696809.1:ENST00000323584.10:ENST00000565424.2:ENST00000567402.5:ENST00000563376.5:ENST00000570047.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	43	2	2.33431	2.424615	2.51492	0.0329839	0.0129219	0.133816	0.0990564
chr21	36047208	36047308	7458586	0	-	0.42	(0.408,0.44]	chr21	759993	8	INTRON	INTRON	SETD4	ENSG00000185917.14	ENST00000399212.5:ENST00000332131.9:ENST00000481477.5:ENST00000399215.5:ENST00000399201.5:ENST00000399208.6:ENST00000399205.5:ENST00000399207.5:ENST00000424303.5:ENST00000429161.5:ENST00000485865.1:ENST00000446166.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	43	2	2.33431	2.424615	2.51492	0.0329839	0.0129219	0.133816	0.0990564
chr7	73054340	73054440	3330729	0	+	0.54	(0.515,0.57]	chr7	309678	52	INTRON	INTRON	ENSG00000285702	ENSG00000285702.1	ENST00000650609.1	lncRNA	lncRNA	lncRNA	lncRNA	7	81	2	2.23927	2.424525	2.60978	0.00328621	0.00151689	0.0527031	0.0352794
chr5	134774651	134774748	2490538	0	+	0.381443	(0.378,0.408]	chr5	237899	4	INTRON	INTRON	DDX46	ENSG00000145833.16	ENST00000628477.2:ENST00000452510.7:ENST00000507392.5:ENST00000354283.8:ENST00000509255.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	72	2	1.86598	2.424465	2.98295	0.0300232	9.47389e-4	0.129138	0.0282007
chr12	10965259	10965352	5267432	0	-	0.322581	(0.32,0.35]	chr12	502204	10	EXON_PSEUDO	EXON_PSEUDO:INTRON	ENSG00000275778:PRH1:TAS2R15P	ENSG00000275778.2:ENSG00000231887.8:ENSG00000212125.2	ENST00000536668.2:ENST00000535024.6:ENST00000539853.5:ENST00000541977.5:ENST00000536086.2:ENST00000546317.1:ENST00000390674.2	protein_coding	protein_coding	protein_coding:unprocessed_pseudogene	protein_coding:nonsense_mediated_decay:processed_transcript:unprocessed_pseudogene	2	37	2	2.40308	2.42444	2.4458	0.0425977	0.0417732	0.161736	0.148082
chr2	25869290	25869390	1085450	0	-	0.33	(0.32,0.35]	chr2	115962	234	INTRON	INTRON	ASXL2	ENSG00000143970.18	ENST00000435504.9:ENST00000336112.9:ENST00000682588.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	37	2	2.40308	2.42444	2.4458	0.0425977	0.0417732	0.161736	0.148082
chr1	246872764	246872863	681344	0	-	0.383838	(0.378,0.408]	chr1	79915	46	INTRON	INTRON	AHCTF1	ENSG00000153207.16	ENST00000648844.2:ENST00000326225.3:ENST00000366508.5:ENST00000470300.5:ENST00000483900.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	33	2	2.13703	2.42443	2.71183	0.0797592	0.0170789	0.19979	0.110899
chr17	47617849	47617949	6622490	0	+	0.4	(0.378,0.408]	chr17	645965	1	SS3_PROX	SS3_PROX:INTRON	NPEPPS	ENSG00000141279.17	ENST00000677710.1:ENST00000530173.6:ENST00000677226.1:ENST00000322157.9:ENST00000678461.1:ENST00000677120.1:ENST00000678909.1:ENST00000678496.1:ENST00000678262.1:ENST00000677370.1:ENST00000677664.1:ENST00000676492.1:ENST00000530514.6:ENST00000678902.1:ENST00000525048.5:ENST00000531486.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	33	2	2.13703	2.42443	2.71183	0.0797592	0.0170789	0.19979	0.110899
chr7	128340617	128340717	3635230	0	-	0.4	(0.378,0.408]	chr7	337917	1	SS5_PROX	SS5_PROX:INTRON	RBM28	ENSG00000106344.8	ENST00000223073.6:ENST00000415472.6:ENST00000478061.5:ENST00000459726.1	protein_coding	protein_coding	protein_coding	protein_coding	2	33	2	2.13703	2.42443	2.71183	0.0797592	0.0170789	0.19979	0.110899
chr6	31754621	31754719	2843641	0	+	0.44898	(0.44,0.476]	chr6	267818	6	INTRON	INTRON	MSH5:MSH5-SAPCD1	ENSG00000204410.16:ENSG00000255152.8	ENST00000375755.8:ENST00000375750.9:ENST00000650702.1:ENST00000493662.6:ENST00000375703.7:ENST00000375740.7:ENST00000423982.6:ENST00000463144.5:ENST00000450148.5:ENST00000468602.5:ENST00000468136.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	88	2	1.75999	2.4243799999999998	3.08877	0.0176116	5.52878e-4	0.105143	0.021371
chr10	110123596	110123676	4519567	0	+	0.4375	(0.408,0.44]	chr10	416838	2	SS3_PROX	SS3_PROX:INTRON	ADD3	ENSG00000148700.15	ENST00000360162.7:ENST00000277900.12:ENST00000356080.9:ENST00000486014.1:ENST00000488837.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	59	2	1.94273	2.424365	2.906	0.0456237	0.00131817	0.149888	0.0333932
chr12	57414764	57414863	5339096	0	-	0.414141	(0.408,0.44]	chr12	510716	186	INTRON	INTRON	R3HDM2	ENSG00000179912.21	ENST00000402412.6:ENST00000347140.7:ENST00000634871.1:ENST00000448732.1	protein_coding	protein_coding	protein_coding	protein_coding	4	59	2	1.94273	2.424365	2.906	0.0456237	0.00131817	0.149888	0.0333932
chr6	143190896	143190996	2976493	0	+	0.43	(0.408,0.44]	chr6	279161	4	INTRON	INTRON	AIG1	ENSG00000146416.19	ENST00000367601.8:ENST00000447498.5:ENST00000646199.1:ENST00000357847.9:ENST00000275235.8:ENST00000458219.1	protein_coding	protein_coding	protein_coding	protein_coding	5	59	2	1.60344	2.42427	3.2451	0.0387506	0.00337792	0.160156	0.0516884
chr18	1327380	1327480	6941453	0	-	0.46	(0.44,0.476]	chr18	686579	34	INTRON	INTRON	LINC00470	ENSG00000132204.14	ENST00000657423.1:ENST00000657618.1:ENST00000584090.5:ENST00000660947.1:ENST00000669242.1:ENST00000660475.1:ENST00000653775.1:ENST00000661931.1:ENST00000412816.7:ENST00000577867.5:ENST00000584492.5:ENST00000667416.1:ENST00000661852.1:ENST00000657919.1:ENST00000661646.1:ENST00000667776.1:ENST00000654559.1:ENST00000661233.1:ENST00000653213.1:ENST00000659094.1:ENST00000660964.1:ENST00000577403.6:ENST00000660358.1:ENST00000669153.1:ENST00000657121.1:ENST00000655957.1:ENST00000659289.1:ENST00000665133.1:ENST00000671558.1:ENST00000666542.1:ENST00000663512.1:ENST00000582862.6:ENST00000578835.5:ENST00000669312.1:ENST00000581430.5:ENST00000581212.1:ENST00000658090.1	lncRNA	lncRNA	lncRNA	lncRNA	5	60	2	1.64563	2.424265	3.2029	0.0363922	0.00308681	0.138959	0.0510391
chr15	67115218	67115318	6052343	0	+	0.43	(0.408,0.44]	chr15	576266	158	INTRON	INTRON	SMAD3	ENSG00000166949.17	ENST00000559460.5:ENST00000327367.9:ENST00000679624.1:ENST00000559937.1:ENST00000559092.1:ENST00000560175.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	43	2	2.00768	2.424225	2.84077	0.035843	0.0132196	0.152216	0.0940535
chr4	23131943	23132043	1929460	0	+	0.44	(0.408,0.44]	chr4	194009	43	INTRON	INTRON	ENSG00000248837	ENSG00000248837.7	ENST00000661585.1:ENST00000663348.1	lncRNA	lncRNA	lncRNA	lncRNA	3	43	2	2.00768	2.424225	2.84077	0.035843	0.0132196	0.152216	0.0940535
chr16	31121118	31121211	6340437	0	+	0.462366	(0.44,0.476]	chr16	608276	1	INTRON	INTRON	KAT8	ENSG00000103510.20	ENST00000543774.6:ENST00000219797.9:ENST00000448516.6	protein_coding	protein_coding	protein_coding	protein_coding	11	149	2	2.16148	2.42409	2.6867	0.00182519	2.82851e-4	0.0396683	0.015495
chr1	32055969	32056069	63075	0	+	0.38	(0.378,0.408]	chr1	7991	102	INTRON	INTRON	KHDRBS1	ENSG00000121774.18	ENST00000484270.2	protein_coding	processed_transcript	protein_coding	processed_transcript	2	33	2	2.38873	2.424025	2.45932	0.0458857	0.0346754	0.149888	0.148144
chr1	243244706	243244806	668613	0	-	0.39	(0.378,0.408]	chr1	79325	190	INTRON	INTRON	CEP170	ENSG00000143702.16	ENST00000366544.5:ENST00000366543.5:ENST00000366542.6:ENST00000522191.5:ENST00000523424.5:ENST00000522522.5:ENST00000522995.1:ENST00000523581.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	33	2	2.38873	2.424025	2.45932	0.0458857	0.0346754	0.149888	0.148144
chr11	6483992	6484090	4727791	0	+	0.408163	(0.378,0.408]	chr11	437617	19	UTR3	UTR3:EXON_MRNA	TIMM10B	ENSG00000132286.12	ENST00000254616.11	protein_coding	protein_coding	protein_coding	protein_coding	2	33	2	2.38873	2.424025	2.45932	0.0458857	0.0346754	0.149888	0.148144
chr2	85044356	85044452	821001	0	+	0.385417	(0.378,0.408]	chr2	91444	3	INTRON	INTRON	KCMF1	ENSG00000176407.18	ENST00000409785.9:ENST00000453448.1	protein_coding	protein_coding	protein_coding	protein_coding	2	33	2	2.38873	2.424025	2.45932	0.0458857	0.0346754	0.149888	0.148144
chr4	67621830	67621930	2153636	0	-	0.4	(0.378,0.408]	chr4	212026	23	INTRON	INTRON	UBA6	ENSG00000033178.13	ENST00000322244.10:ENST00000514261.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	33	2	2.38873	2.424025	2.45932	0.0458857	0.0346754	0.149888	0.148144
chr2	38297200	38297288	1098521	0	-	0.375	(0.35,0.378]	chr2	117795	1	INTRON	INTRON	ATL2	ENSG00000119787.14	ENST00000378954.9:ENST00000406122.5:ENST00000405384.6:ENST00000402054.5:ENST00000419554.6:ENST00000651368.1:ENST00000452935.6:ENST00000629272.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	71	2	1.6756	2.42402	3.17244	0.0219737	0.00487788	0.123836	0.0607461
chr6	130884131	130884223	3219280	0	-	0.532609	(0.515,0.57]	chr6	299212	6	INTRON	INTRON	EPB41L2	ENSG00000079819.19	ENST00000628542.2:ENST00000445890.6:ENST00000337057.8:ENST00000530481.5:ENST00000528282.5:ENST00000392427.7:ENST00000368128.6:ENST00000527411.5:ENST00000525271.5:ENST00000529208.5:ENST00000525193.5:ENST00000527659.5:ENST00000456097.6:ENST00000639623.1	protein_coding	protein_coding	protein_coding	protein_coding	4	44	2	1.81744	2.423905	3.03037	0.031028	0.00608732	0.143457	0.0676501
chr19	40457098	40457198	7184494	0	-	0.45	(0.44,0.476]	chr19	726747	2	SS5_PROX	SS5_PROX:INTRON	BLVRB	ENSG00000090013.11	ENST00000643519.1:ENST00000263368.9:ENST00000595483.5:ENST00000643596.1:ENST00000601346.5:ENST00000597870.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	18	198	2	1.69247	2.423845	3.15522	0.00340638	4.40653e-5	0.053824	0.00570128
chr1	207774318	207774417	305132	0	+	0.343434	(0.32,0.35]	chr1	35121	36	INTRON	INTRON	CD46	ENSG00000117335.21	ENST00000695779.1:ENST00000695777.1:ENST00000695778.1:ENST00000496723.2:ENST00000695782.1:ENST00000695781.1:ENST00000695780.1:ENST00000636114.2:ENST00000367042.6:ENST00000322875.8:ENST00000322918.9:ENST00000354848.5:ENST00000357714.5:ENST00000358170.6:ENST00000367041.5:ENST00000367047.5:ENST00000695783.1:ENST00000695784.1:ENST00000469535.5:ENST00000360212.6:ENST00000480003.5:ENST00000695786.1:ENST00000490278.2:ENST00000488596.5:ENST00000471987.1:ENST00000462968.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	81	2	1.8526	2.423775	2.99495	0.0332438	0.00102621	0.134145	0.0294094
chr19	29944257	29944356	7047573	0	+	0.353535	(0.35,0.378]	chr19	702657	12	INTRON	INTRON	URI1	ENSG00000105176.18	ENST00000360605.8:ENST00000570564.5:ENST00000574233.5:ENST00000392271.6:ENST00000574110.5:ENST00000574666.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	65	2	1.53008	2.42372	3.31736	0.0530361	0.00211072	0.162198	0.0425419
chr10	13210010	13210110	4395854	0	+	0.32	(0.28,0.32]	chr10	405720	8	UTR3	UTR3:EXON_MRNA	MCM10	ENSG00000065328.17	ENST00000378714.8:ENST00000378694.1	protein_coding	protein_coding	protein_coding	protein_coding	6	105	2	2.17579	2.42366	2.67153	0.00757046	0.00436402	0.0749063	0.060356
chr16	14614497	14614597	6449692	0	-	0.54	(0.515,0.57]	chr16	621343	33	INTRON	INTRON	PARN	ENSG00000140694.17	ENST00000651865.1:ENST00000437198.7:ENST00000651348.1:ENST00000650990.1:ENST00000651760.1:ENST00000652541.1:ENST00000652727.1:ENST00000652066.1:ENST00000651300.1:ENST00000420015.6:ENST00000652051.1:ENST00000341484.11:ENST00000539279.5:ENST00000651049.1:ENST00000650960.1:ENST00000651634.1:ENST00000564113.6:ENST00000652411.1:ENST00000652501.1:ENST00000651027.1:ENST00000651913.1:ENST00000563641.6:ENST00000651241.1:ENST00000538472.5:ENST00000566021.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	50	2	2.01737	2.423655	2.82994	0.0352218	0.00168661	0.137535	0.0381778
chr6	36597189	36597282	2854443	0	+	0.548387	(0.515,0.57]	chr6	269777	1	SS5_PROX	SS5_PROX:INTRON	SRSF3	ENSG00000112081.17	ENST00000613941.4:ENST00000373715.11:ENST00000339436.11:ENST00000477442.6:ENST00000620941.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	82	2	1.7492	2.42364	3.09808	0.0382504	1.21563e-4	0.15832	0.00992813
chr1	26246012	26246112	49605	0	+	0.39	(0.378,0.408]	chr1	6205	13	INTRON	INTRON	CEP85	ENSG00000130695.16	ENST00000451429.8:ENST00000640292.2:ENST00000252992.8	protein_coding	protein_coding	protein_coding	protein_coding	4	53	2	1.94559	2.423605	2.90162	0.0211434	0.0113157	0.122929	0.0886121
chr18	12998820	12998920	6876640	0	+	0.38	(0.378,0.408]	chr18	681336	70	INTRON	INTRON	CEP192	ENSG00000101639.19	ENST00000325971.12:ENST00000506447.5:ENST00000589596.5:ENST00000507064.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	53	2	1.94559	2.423605	2.90162	0.0211434	0.0113157	0.122929	0.0886121
chr1	246122199	246122299	676854	0	-	0.42	(0.408,0.44]	chr1	79721	259	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000391836.3:ENST00000453676.5:ENST00000462422.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	67	2	1.43388	2.423555	3.41323	0.0509486	0.00129989	0.157123	0.0333764
chr10	101816250	101816348	4680956	0	-	0.44898	(0.44,0.476]	chr10	432022	23	INTRON	INTRON	OGA	ENSG00000198408.14	ENST00000439817.5:ENST00000361464.8:ENST00000357797.9:ENST00000370094.7:ENST00000429860.1	protein_coding	protein_coding	protein_coding	protein_coding	17	221	2	2.32995	2.42352	2.51709	7.32138e-4	5.57318e-5	0.0248783	0.0061075
chr7	157191376	157191475	3454476	0	+	0.525253	(0.515,0.57]	chr7	322957	22	INTRON	INTRON	UBE3C	ENSG00000009335.18	ENST00000348165.10	protein_coding	protein_coding	protein_coding	protein_coding	11	113	2	1.51973	2.42352	3.32731	0.0185053	2.16537e-5	0.108861	0.00361845
chr9	137623356	137623456	4223515	0	+	0.46	(0.44,0.476]	chr9	388152	29	INTRON	INTRON	EHMT1	ENSG00000181090.21	ENST00000462484.5:ENST00000371394.6:ENST00000630754.2:ENST00000460843.6:ENST00000626216.2:ENST00000637593.1:ENST00000629335.2:ENST00000637335.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	69	2	1.90381	2.4235100000000003	2.94321	0.0260626	0.00111162	0.122153	0.0305384
chr1	44339136	44339229	436244	0	-	0.580645	(0.57,1]	chr1	52869	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	ERI3	ENSG00000117419.16	ENST00000372257.7:ENST00000649995.1:ENST00000452396.5:ENST00000495828.1:ENST00000457571.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	35	2	1.66359	2.423295	3.183	0.0224545	0.00254356	0.124921	0.0448135
chr12	120580328	120580423	5434455	0	-	0.357895	(0.35,0.378]	chr12	519592	3	SS3_PROX	SS3_PROX:INTRON	POP5	ENSG00000167272.11	ENST00000357500.5:ENST00000341039.6:ENST00000542776.5:ENST00000543355.5:ENST00000535245.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	58	2	1.91706	2.42329	2.92952	0.026412	0.00881187	0.122506	0.084878
chr7	155302150	155302250	3451804	0	+	0.29	(0.28,0.32]	chr7	322620	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	INSIG1	ENSG00000186480.13	ENST00000344756.8:ENST00000340368.9:ENST00000342407.5:ENST00000476756.1:ENST00000468307.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	110	2	2.21798	2.42324	2.6285	0.00901091	0.00255625	0.0851009	0.0449775
chr6	78968044	78968143	3140946	0	-	0.525253	(0.515,0.57]	chr6	292762	16	INTRON	INTRON	PHIP	ENSG00000146247.14	ENST00000275034.5:ENST00000479165.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	59	2	2.11384	2.42321	2.73258	0.0118599	0.00260192	0.0899583	0.0470772
chr2	26053077	26053177	713289	0	+	0.37	(0.35,0.378]	chr2	82440	104	INTRON	INTRON	RAB10	ENSG00000084733.11	ENST00000264710.5:ENST00000495146.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	47	2	2.39939	2.4232	2.44701	0.0458078	0.00900997	0.149888	0.0851009
chr1	205742492	205742592	623813	0	-	0.54	(0.515,0.57]	chr1	74198	113	INTRON	INTRON	NUCKS1	ENSG00000069275.13	ENST00000367142.5	protein_coding	protein_coding	protein_coding	protein_coding	4	47	2	2.41022	2.4230549999999997	2.43589	0.0370871	0.00332441	0.139194	0.0528673
chr16	16654857	16654956	6312414	0	+	0.484848	(0.476,0.515]	chr16	604112	60	INTRON	INTRON	ENSG00000260126	ENSG00000260126.2	ENST00000567465.2	lncRNA	lncRNA	lncRNA	lncRNA	8	99	2	1.95422	2.422935	2.89165	0.00584847	0.00142068	0.0667594	0.034662
chr5	119184025	119184124	2460926	0	+	0.454545	(0.44,0.476]	chr5	235744	54	INTRON	INTRON	DMXL1	ENSG00000172869.15	ENST00000539542.6:ENST00000311085.8	protein_coding	protein_coding	protein_coding	protein_coding	4	59	2	2.21079	2.422935	2.63508	0.0194581	0.00501007	0.119831	0.0618077
chr6	83177223	83177318	3145710	0	-	0.326316	(0.32,0.35]	chr6	293277	8	INTRON	INTRON	PGM3	ENSG00000013375.16	ENST00000513973.6:ENST00000512866.5:ENST00000650640.1:ENST00000616566.5:ENST00000283977.9:ENST00000651425.1:ENST00000651698.1:ENST00000650642.1:ENST00000651204.1:ENST00000652222.1:ENST00000506587.5:ENST00000509219.2:ENST00000652468.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	83	2	2.1362	2.422935	2.70967	0.0291083	0.00105927	0.128029	0.0299929
chr7	5696172	5696272	3474097	0	-	0.46	(0.44,0.476]	chr7	324821	433	INTRON	INTRON	RNF216	ENSG00000011275.19	ENST00000425013.6:ENST00000389902.8:ENST00000389900.8:ENST00000484458.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	59	2	2.21079	2.422935	2.63508	0.0194581	0.00501007	0.119831	0.0618077
chr1	174400535	174400635	259535	0	+	0.32	(0.28,0.32]	chr1	30818	60	INTRON	INTRON	RABGAP1L	ENSG00000152061.24	ENST00000357444.10:ENST00000251507.8:ENST00000681986.1:ENST00000367690.5:ENST00000526253.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	79	2	2.0243	2.422905	2.82151	0.0364967	0.00341865	0.153759	0.0517761
chr3	138235813	138235912	1514444	0	+	0.535354	(0.515,0.57]	chr3	158331	3	INTRON	INTRON	ARMC8	ENSG00000114098.18	ENST00000538260.5:ENST00000481646.5:ENST00000469044.6:ENST00000491704.5:ENST00000358441.6:ENST00000489213.5:ENST00000461822.5:ENST00000485396.5:ENST00000471453.5:ENST00000470821.5:ENST00000471709.5:ENST00000463485.5:ENST00000469860.2:ENST00000470549.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	39	2	2.38476	2.4229000000000003	2.46104	0.032841	0.0110593	0.145164	0.0873897
chr16	18878510	18878608	6457617	0	-	0.530612	(0.515,0.57]	chr16	622829	14	EXON_MRNA	EXON_MRNA:INTRON	SMG1	ENSG00000157106.18	ENST00000446231.7:ENST00000565324.5:ENST00000561947.5:ENST00000565224.5:ENST00000568239.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	51	2	1.94248	2.422795	2.90311	0.0115668	0.0094233	0.0962115	0.0817766
chr3	47758955	47759055	1684847	0	-	0.52	(0.515,0.57]	chr3	172116	126	INTRON	INTRON	SMARCC1	ENSG00000173473.11	ENST00000254480.10:ENST00000425518.5:ENST00000454240.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	10	96	2	1.96292	2.422795	2.88267	0.00221461	0.00152842	0.0435144	0.0353936
chr1	31908364	31908462	414123	0	-	0.428571	(0.408,0.44]	chr1	49867	21	UTR3	UTR3:EXON_MRNA:INTRON	ENSG00000269967:PTP4A2	ENSG00000269967.1:ENSG00000184007.22	ENST00000602889.1:ENST00000647444.2:ENST00000602725.5:ENST00000649841.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	54	711	2	2.14001	2.42277	2.70553	6.33959e-5	5.27248e-6	0.00658818	0.00170345
chr6	15302527	15302627	2823511	0	+	0.31	(0.28,0.32]	chr6	265190	532	INTRON	INTRON	JARID2	ENSG00000008083.14	ENST00000341776.7:ENST00000397311.4	protein_coding	protein_coding	protein_coding	protein_coding	6	106	2	2.31055	2.42265	2.53475	0.00834688	0.00257029	0.0774402	0.0466761
chr6	31531659	31531744	3078730	0	-	0.376471	(0.35,0.378]	chr6	286733	4	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	DDX39B	ENSG00000198563.14	ENST00000458640.5:ENST00000462256.5:ENST00000376177.6:ENST00000484566.5:ENST00000474961.5:ENST00000396172.6:ENST00000417023.5:ENST00000478365.1:ENST00000482195.5:ENST00000431908.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	39	549	2	2.3722	2.42265	2.4731	6.73642e-5	2.81276e-5	0.00723643	0.00419957
chr1	9541744	9541844	17155	0	+	0.38	(0.378,0.408]	chr1	1570	16	INTRON	INTRON	SLC25A33	ENSG00000171612.7	ENST00000302692.7	protein_coding	protein_coding	protein_coding	protein_coding	6	87	2	2.39048	2.422565	2.45465	0.00395852	0.00381582	0.057511	0.0542786
chr2	30158942	30159041	725865	0	+	0.343434	(0.32,0.35]	chr2	83921	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	YPEL5	ENSG00000119801.13	ENST00000379520.7:ENST00000379519.7:ENST00000261353.9:ENST00000402003.7:ENST00000402708.5:ENST00000470120.5:ENST00000495673.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	72	2	2.21292	2.42251	2.6321	0.0268	0.00445585	0.123349	0.0610799
chr22	41282122	41282220	7591113	0	-	0.428571	(0.408,0.44]	chr22	777372	12	UTR5	UTR5:EXON_MRNA:INTRON	RANGAP1	ENSG00000100401.20	ENST00000356244.8:ENST00000405486.5:ENST00000455915.6:ENST00000422838.1	protein_coding	protein_coding	protein_coding	protein_coding	4	52	2	1.64062	2.422495	3.20437	0.0557275	0.00306596	0.165463	0.0509893
chrX	48935418	48935518	7815849	0	-	0.42	(0.408,0.44]	chrX	796853	4	SS3_PROX	SS3_PROX:INTRON	OTUD5	ENSG00000068308.15	ENST00000376488.8:ENST00000396743.7:ENST00000455452.5:ENST00000156084.8:ENST00000428668.2:ENST00000484499.5:ENST00000481142.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	52	2	1.64062	2.422495	3.20437	0.0557275	0.00306596	0.165463	0.0509893
chrX	74227301	74227401	7840944	0	-	0.44	(0.408,0.44]	chrX	799703	82	INTRON	INTRON	FTX	ENSG00000230590.12	ENST00000603672.5:ENST00000430772.6:ENST00000602776.6:ENST00000638681.1:ENST00000652319.1:ENST00000661133.1:ENST00000652071.1:ENST00000602812.6:ENST00000651703.1:ENST00000653018.1:ENST00000658448.1:ENST00000662240.1:ENST00000652527.1:ENST00000651451.1:ENST00000657611.1:ENST00000660481.1:ENST00000659574.1:ENST00000661084.1:ENST00000662494.1:ENST00000670936.1:ENST00000602420.6:ENST00000658203.1:ENST00000638985.1:ENST00000691187.1:ENST00000603037.2:ENST00000641360.1:ENST00000687056.1:ENST00000654870.2:ENST00000652540.1:ENST00000652331.2:ENST00000652013.1:ENST00000669263.1:ENST00000657070.1:ENST00000665069.1:ENST00000651936.1:ENST00000652496.1:ENST00000653874.2:ENST00000661335.1:ENST00000664123.1:ENST00000658439.1:ENST00000666535.1:ENST00000652970.1:ENST00000423992.3:ENST00000665313.2:ENST00000651140.1:ENST00000660100.1:ENST00000693483.1	lncRNA	lncRNA	lncRNA	lncRNA	4	52	2	1.64062	2.422495	3.20437	0.0557275	0.00306596	0.165463	0.0509893
chr14	21264058	21264155	5835114	0	-	0.381443	(0.378,0.408]	chr14	554468	16	UTR5	UTR5:EXON_MRNA:SS3_PROX:INTRON	HNRNPC	ENSG00000092199.19	ENST00000336053.10:ENST00000553300.6:ENST00000554969.5:ENST00000556142.5:ENST00000554455.5:ENST00000430246.6:ENST00000553753.5:ENST00000555309.5:ENST00000555914.5:ENST00000557442.5:ENST00000556628.5:ENST00000556513.5:ENST00000555883.5:ENST00000557201.5:ENST00000420743.6:ENST00000554539.5:ENST00000554383.5:ENST00000555215.5:ENST00000555137.5:ENST00000554891.5:ENST00000556226.5:ENST00000555176.5:ENST00000553614.5:ENST00000557336.1:ENST00000557768.1:ENST00000557033.1:ENST00000555127.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	15	207	2	2.33085	2.4224699999999997	2.51409	3.53898e-4	3.16529e-4	0.0168397	0.0164232
chr1	70206678	70206777	142439	0	+	0.383838	(0.378,0.408]	chr1	15965	5	INTRON	INTRON	SRSF11	ENSG00000116754.14	ENST00000370951.5:ENST00000463877.1:ENST00000687381.1:ENST00000370950.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	46	2	2.21238	2.422425	2.63247	0.0218124	0.0215745	0.123836	0.11491
chr2	87470548	87470648	826074	0	+	0.54	(0.515,0.57]	chr2	92414	5	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	CYTOR:ENSG00000284879	ENSG00000222041.12:ENSG00000284879.1	ENST00000642796.1:ENST00000643589.1:ENST00000642451.1:ENST00000646386.1:ENST00000644478.1:ENST00000409139.6:ENST00000331944.10:ENST00000644125.1:ENST00000643743.1:ENST00000644577.1:ENST00000643276.1:ENST00000409898.2:ENST00000419680.6:ENST00000645257.1:ENST00000644976.1:ENST00000643070.1:ENST00000646855.1:ENST00000414584.1:ENST00000455131.5:ENST00000646636.1:ENST00000642293.1:ENST00000423846.5:ENST00000644040.1:ENST00000645138.1:ENST00000437561.2:ENST00000629257.1:ENST00000414030.6	lncRNA	lncRNA	lncRNA	lncRNA	5	51	2	1.44089	2.4223850000000002	3.40388	0.0617046	0.00142538	0.193423	0.0340865
chr7	72889629	72889728	3329892	0	+	0.373737	(0.35,0.378]	chr7	309555	94	INTRON	INTRON	POM121	ENSG00000196313.13	ENST00000627934.3:ENST00000395270.5	protein_coding	protein_coding	protein_coding	protein_coding	6	86	2	2.24809	2.422325	2.59656	0.00638551	0.00361961	0.0693551	0.0554656
chrX	44988292	44988391	7649756	0	+	0.373737	(0.35,0.378]	chrX	782744	112	INTRON	INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000675440.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000621147.5:ENST00000475233.1:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	86	2	2.24809	2.422325	2.59656	0.00638551	0.00361961	0.0693551	0.0554656
chr10	67977770	67977870	4636948	0	-	0.45	(0.44,0.476]	chr10	426348	106	INTRON	INTRON	HERC4	ENSG00000148634.16	ENST00000277817.10:ENST00000373700.9:ENST00000412272.6:ENST00000395198.7:ENST00000473533.6:ENST00000427635.6:ENST00000460168.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	43	2	2.02558	2.42227	2.81896	0.0363567	0.0120766	0.138959	0.0962311
chr1	35640941	35641041	422314	0	-	0.5	(0.476,0.515]	chr1	50874	2	SS5_PROX	SS5_PROX:INTRON	PSMB2	ENSG00000126067.12	ENST00000373237.4	protein_coding	protein_coding	protein_coding	protein_coding	3	45	2	2.365	2.422245	2.47949	0.0326974	0.0128901	0.145164	0.0926667
chr16	88948819	88948918	6541015	0	-	0.494949	(0.476,0.515]	chr16	634104	71	INTRON	INTRON	CBFA2T3	ENSG00000129993.15	ENST00000268679.9:ENST00000563640.1:ENST00000570046.1	protein_coding	protein_coding	protein_coding	protein_coding	3	45	2	2.365	2.422245	2.47949	0.0326974	0.0128901	0.145164	0.0926667
chr3	160424240	160424340	1544865	0	+	0.34	(0.32,0.35]	chr3	160748	4	SS5_PROX	SS5_PROX:INTRON	SMC4	ENSG00000113810.16	ENST00000357388.8:ENST00000469762.5:ENST00000469858.5:ENST00000462787.5:ENST00000344722.5:ENST00000462668.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	68	2	1.76503	2.42219	3.07935	0.0240772	0.00724137	0.129859	0.0729826
chr2	61369620	61369720	1129532	0	-	0.25	[0,0.28]	chr2	121448	186	INTRON	INTRON	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000453133.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	122	2	2.08156	2.4221000000000004	2.76264	0.020235	0.00115414	0.109955	0.0313436
chr7	87855104	87855202	3566161	0	-	0.357143	(0.35,0.378]	chr7	332316	4	INTRON	INTRON	SLC25A40	ENSG00000075303.13	ENST00000341119.10:ENST00000429674.5:ENST00000444363.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	63	2	2.04224	2.422015	2.80179	0.0363073	0.00223906	0.138959	0.0435144
chr13	113225086	113225186	5548444	0	+	0.4	(0.378,0.408]	chr13	530128	54	INTRON	INTRON	CUL4A	ENSG00000139842.15	ENST00000375441.7:ENST00000326335.8:ENST00000451881.5:ENST00000617546.4:ENST00000488558.2:ENST00000375440.9:ENST00000494985.5:ENST00000463426.5:ENST00000498562.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	44	2	2.17608	2.421965	2.66785	0.0224639	0.0218783	0.123836	0.11692
chr15	92886528	92886619	6103543	0	+	0.241758	[0,0.28]	chr15	581364	4	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	CHASERR:ENSG00000279765	ENSG00000272888.8:ENSG00000279765.3	ENST00000653163.1:ENST00000557682.6:ENST00000556895.5:ENST00000554894.5:ENST00000629685.2:ENST00000554133.5:ENST00000555227.1:ENST00000630790.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	10	167	2	2.07333	2.4219	2.77047	0.00505301	0.00245705	0.0621733	0.0459102
chr2	26047679	26047779	713235	0	+	0.46	(0.44,0.476]	chr2	82440	50	INTRON	INTRON	RAB10	ENSG00000084733.11	ENST00000264710.5:ENST00000495146.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	51	2	1.98146	2.421885	2.86231	0.0186013	0.012214	0.117264	0.0910127
chr6	110885107	110885206	2939047	0	+	0.474747	(0.44,0.476]	chr6	276765	91	INTRON	INTRON	AMD1	ENSG00000123505.19	ENST00000451850.6:ENST00000675380.1:ENST00000368882.8:ENST00000672937.2:ENST00000368885.8:ENST00000368877.9:ENST00000368876.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	51	2	1.98146	2.421885	2.86231	0.0186013	0.012214	0.117264	0.0910127
chr6	26026895	26026940	3070744	0	-	0.511111	(0.476,0.515]	chr6	285380	1	UTR3	UTR3:EXON_MRNA	H4C2	ENSG00000278705.3	ENST00000377745.5	protein_coding	protein_coding	protein_coding	protein_coding	5	62	2	1.89682	2.42187	2.94692	0.0158424	0.00794331	0.101453	0.0797304
chr6	43000160	43000260	2868118	0	+	0.49	(0.476,0.515]	chr6	271466	101	INTRON	INTRON	PPP2R5D	ENSG00000112640.16	ENST00000394110.7:ENST00000472118.5:ENST00000485511.6:ENST00000230402.10:ENST00000461010.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	57	2	2.41121	2.421815	2.43242	0.0110342	0.0091895	0.0873897	0.0855292
chr16	14761517	14761615	6303955	0	+	0.469388	(0.44,0.476]	chr16	602878	18	INTRON	INTRON	NPIPA2	ENSG00000254852.9	ENST00000529166.6:ENST00000530328.5:ENST00000553201.1	protein_coding	protein_coding	protein_coding	protein_coding	4	51	2	1.81595	2.42173	3.02751	0.0317953	0.00715968	0.14477	0.0723634
chr14	102617516	102617616	5822782	0	+	0.4	(0.378,0.408]	chr14	552490	238	INTRON	INTRON	RCOR1	ENSG00000089902.10	ENST00000262241.7	protein_coding	protein_coding	protein_coding	protein_coding	4	53	2	1.99678	2.421705	2.84663	0.0177959	0.0133954	0.113452	0.0946278
chr14	75132346	75132444	5924337	0	-	0.459184	(0.44,0.476]	chr14	563168	10	UTR3	UTR3:EXON_MRNA	TMED10	ENSG00000170348.9	ENST00000303575.9	protein_coding	protein_coding	protein_coding	protein_coding	10	127	2	2.01805	2.4216800000000003	2.82531	0.00332266	5.00634e-4	0.0512081	0.020217099999999998
chr19	1423094	1423193	6995257	0	+	0.787879	(0.57,1]	chr19	693200	3	INTRON	INTRON	DAZAP1	ENSG00000071626.17	ENST00000336761.10:ENST00000233078.9:ENST00000592522.5:ENST00000586579.5:ENST00000587079.5:ENST00000592453.2:ENST00000589484.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	39	2	1.75023	2.42168	3.09313	0.0111057	0.00369015	0.0932699	0.0535094
chr7	23404422	23404518	3503002	0	-	0.364583	(0.35,0.378]	chr7	326886	15	INTRON	INTRON	IGF2BP3	ENSG00000136231.14	ENST00000258729.8:ENST00000421467.6:ENST00000468263.5:ENST00000479504.5:ENST00000466809.6:ENST00000491719.5:ENST00000465058.5:ENST00000469723.5:ENST00000476938.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	63	2	2.39583	2.421665	2.4475	0.0107976	0.0106974	0.0920575	0.0862205
chr21	36345823	36345921	7403956	0	+	0.510204	(0.476,0.515]	chr21	754318	4	INTRON	INTRON	MORC3	ENSG00000159256.13	ENST00000400485.6:ENST00000487909.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	109	2	1.72678	2.421625	3.11647	0.00766467	6.41912e-4	0.0780196	0.0231685
chr16	53132794	53132894	6351500	0	+	0.46	(0.44,0.476]	chr16	609680	11	INTRON	INTRON	CHD9	ENSG00000177200.18	ENST00000447540.6:ENST00000566029.5:ENST00000615216.4:ENST00000565832.5:ENST00000564845.5:ENST00000563410.1	protein_coding	protein_coding	protein_coding	protein_coding	9	120	2	2.38553	2.4216100000000003	2.45769	0.00166589	9.57032e-4	0.0369207	0.0284484
chr17	65014057	65014156	6817993	0	-	0.393939	(0.378,0.408]	chr17	674118	49	UTR3	UTR3:EXON_MRNA	GNA13	ENSG00000120063.10	ENST00000439174.7:ENST00000541118.1	protein_coding	protein_coding	protein_coding	protein_coding	4	53	2	1.8374	2.42154	3.00568	0.0299228	0.00811866	0.142135	0.0766625
chr17	78697282	78697379	6844970	0	-	0.381443	(0.378,0.408]	chr17	677280	6	INTRON	INTRON	CYTH1	ENSG00000108669.17	ENST00000589296.5:ENST00000361101.8:ENST00000446868.8:ENST00000591455.5:ENST00000589297.5:ENST00000585509.5:ENST00000591574.5:ENST00000590775.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	53	2	1.8374	2.42154	3.00568	0.0299228	0.00811866	0.142135	0.0766625
chr19	19423315	19423415	7035522	0	+	0.38	(0.378,0.408]	chr19	701433	169	INTRON	INTRON	GATAD2A	ENSG00000167491.18	ENST00000494516.6:ENST00000360315.7:ENST00000609040.5:ENST00000417582.6:ENST00000683918.1:ENST00000448576.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	53	2	1.8374	2.42154	3.00568	0.0299228	0.00811866	0.142135	0.0766625
chr19	21763008	21763108	7159260	0	-	0.39	(0.378,0.408]	chr19	723737	91	INTRON	INTRON	ZNF100	ENSG00000197020.12	ENST00000358296.11:ENST00000598026.1:ENST00000596452.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	53	2	1.8374	2.42154	3.00568	0.0299228	0.00811866	0.142135	0.0766625
chr20	3217441	3217536	7224366	0	+	0.378947	(0.378,0.408]	chr20	734119	18	INTRON	INTRON	ITPA	ENSG00000125877.13	ENST00000483354.5:ENST00000460676.5:ENST00000490838.6:ENST00000380113.8:ENST00000609835.5:ENST00000460550.5:ENST00000455664.6:ENST00000399838.3:ENST00000461029.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	53	2	1.8374	2.42154	3.00568	0.0299228	0.00811866	0.142135	0.0766625
chr11	9437059	9437156	4729961	0	+	0.494845	(0.476,0.515]	chr11	437936	3	INTRON	INTRON	IPO7	ENSG00000205339.10	ENST00000379719.8	protein_coding	protein_coding	protein_coding	protein_coding	2	32	2	2.28264	2.4214849999999997	2.56033	0.0534132	0.0287634	0.179876	0.127066
chr15	79911529	79911627	6241056	0	-	0.5	(0.476,0.515]	chr15	595783	35	INTRON	INTRON	ST20-MTHFS:ST20	ENSG00000259332.3:ENSG00000180953.11	ENST00000615374.5:ENST00000479961.1:ENST00000494999.1:ENST00000478497.5:ENST00000485386.1	protein_coding	protein_coding	protein_coding	protein_coding	2	32	2	2.28264	2.4214849999999997	2.56033	0.0534132	0.0287634	0.179876	0.127066
chr2	227526708	227526808	1026210	0	+	0.48	(0.476,0.515]	chr2	109589	14	INTRON	INTRON	AGFG1	ENSG00000173744.18	ENST00000409979.6:ENST00000310078.13:ENST00000409315.5:ENST00000373671.7:ENST00000409171.5:ENST00000456594.1	protein_coding	protein_coding	protein_coding	protein_coding	2	32	2	2.28264	2.4214849999999997	2.56033	0.0534132	0.0287634	0.179876	0.127066
chr8	41793156	41793255	3939017	0	-	0.484848	(0.476,0.515]	chr8	361127	35	INTRON	INTRON	ANK1	ENSG00000029534.21	ENST00000347528.8:ENST00000265709.13:ENST00000289734.13:ENST00000521407.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	32	2	2.28264	2.4214849999999997	2.56033	0.0534132	0.0287634	0.179876	0.127066
chr1	110364684	110364783	182598	0	+	0.555556	(0.515,0.57]	chr1	20257	83	INTRON	INTRON	LAMTOR5-AS1	ENSG00000224699.10	ENST00000626572.2	lncRNA	lncRNA	lncRNA	lncRNA	11	124	2	2.14437	2.421435	2.6985	0.00207895	1.37652e-4	0.0411801	0.010101
chr3	48082575	48082675	1687437	0	-	0.5	(0.476,0.515]	chr3	172280	663	INTRON	INTRON	MAP4	ENSG00000047849.22	ENST00000395734.7:ENST00000426837.6:ENST00000360240.10:ENST00000423088.5:ENST00000439356.2:ENST00000468075.2	protein_coding	protein_coding	protein_coding	protein_coding	6	78	2	2.07116	2.421335	2.77151	0.00731321	0.00288481	0.076234	0.0475859
chr16	89688489	89688576	6421483	0	+	0.482759	(0.476,0.515]	chr16	616479	3	INTRON	INTRON	CDK10	ENSG00000185324.22	ENST00000331006.12:ENST00000505473.5:ENST00000508723.5:ENST00000511415.5:ENST00000502547.5:ENST00000353379.12:ENST00000505733.5:ENST00000512912.5:ENST00000510811.6:ENST00000507205.5:ENST00000472018.5:ENST00000625631.1:ENST00000564192.5:ENST00000378277.8:ENST00000514965.5:ENST00000503560.1:ENST00000504473.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	102	2	1.67133	2.421265	3.1712	0.012282	4.95874e-4	0.0970106	0.0206925
chr19	52649748	52649848	7206721	0	-	0.36	(0.35,0.378]	chr19	731394	115	INTRON	INTRON	ZNF83	ENSG00000167766.20	ENST00000600714.5:ENST00000601257.5:ENST00000594682.6:ENST00000687234.1:ENST00000598536.5:ENST00000595171.5:ENST00000596440.5:ENST00000602232.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	75	2	2.28182	2.421265	2.56071	0.00725312	0.00637232	0.072984	0.0724821
chr6	17979069	17979169	3068468	0	-	0.51	(0.476,0.515]	chr6	285105	273	INTRON	INTRON	KIF13A	ENSG00000137177.20	ENST00000378814.9:ENST00000259711.11:ENST00000378826.6:ENST00000378843.6:ENST00000636847.1:ENST00000507576.1:ENST00000505588.1:ENST00000502704.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	84	2	2.25138	2.42123	2.59108	0.00692374	0.00196853	0.0753208	0.0402283
chr21	44048490	44048590	7415396	0	+	0.48	(0.476,0.515]	chr21	755795	102	INTRON	INTRON	TRAPPC10	ENSG00000160218.13	ENST00000291574.9:ENST00000380221.7:ENST00000422875.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	70	2	1.96833	2.421195	2.87406	0.0195007	0.00188729	0.119967	0.0391691
chr12	68639834	68639934	5161496	0	+	0.49	(0.476,0.515]	chr12	488585	146	INTRON	INTRON	RAP1B	ENSG00000127314.18	ENST00000460800.5:ENST00000393436.9:ENST00000250559.14:ENST00000425247.6:ENST00000501412.2:ENST00000450214.6:ENST00000463493.5:ENST00000537460.5:ENST00000341355.9:ENST00000538283.5:ENST00000541167.5:ENST00000422358.6:ENST00000489473.6:ENST00000545270.5:ENST00000538980.5:ENST00000543393.5:ENST00000542018.5:ENST00000540209.5:ENST00000378985.7:ENST00000453560.6:ENST00000534899.5:ENST00000542145.5:ENST00000539091.5:ENST00000535492.5:ENST00000540781.5:ENST00000485252.6:ENST00000538877.5:ENST00000541386.5:ENST00000543697.5:ENST00000545720.6:ENST00000541216.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	10	132	2	2.31424	2.42119	2.52814	0.00308038	2.55095e-4	0.0496438	0.0142249
chr17	30152431	30152529	6587747	0	+	0.285714	(0.28,0.32]	chr17	640567	19	INTRON	INTRON	NSRP1	ENSG00000126653.18	ENST00000540900.7:ENST00000612959.4:ENST00000247026.10:ENST00000577289.6:ENST00000584154.5:ENST00000394826.8:ENST00000475652.5:ENST00000584317.5:ENST00000585881.5:ENST00000467446.6:ENST00000580103.6:ENST00000581048.5:ENST00000588614.1:ENST00000589608.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	74	2	1.79739	2.42112	3.04485	0.0224995	0.00894006	0.124921	0.0799922
chrX	123618116	123618214	7877865	0	-	0.306122	(0.28,0.32]	chrX	802418	36	INTRON	INTRON	THOC2	ENSG00000125676.20	ENST00000448128.5:ENST00000245838.13:ENST00000441692.5:ENST00000497887.5:ENST00000618150.4:ENST00000432353.5:ENST00000355725.8:ENST00000416618.5:ENST00000491737.5:ENST00000464992.6:ENST00000496830.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	74	2	1.64429	2.421015	3.19774	0.0365539	0.00548491	0.153932	0.0648867
chr16	1316620	1316719	6274048	0	+	0.262626	[0,0.28]	chr16	599220	10	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	UBE2I	ENSG00000103275.21	ENST00000355803.8:ENST00000325437.9:ENST00000397515.6:ENST00000397514.8:ENST00000473256.6:ENST00000568288.5:ENST00000567383.6:ENST00000403747.6:ENST00000568209.5:ENST00000566587.5:ENST00000406620.6:ENST00000562470.3:ENST00000679082.1:ENST00000567074.6:ENST00000402301.5:ENST00000677314.1:ENST00000566775.2:ENST00000566159.1:ENST00000564143.1:ENST00000679137.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	84	2	2.02265	2.4209750000000003	2.8193	0.0449017	0.00285248	0.149888	0.0494641
chr6	34373266	34373366	3084580	0	-	0.23	[0,0.28]	chr6	288633	309	INTRON	INTRON	NUDT3:RPS10-NUDT3	ENSG00000272325.2:ENSG00000270800.3	ENST00000607016.2:ENST00000639725.1:ENST00000639877.1:ENST00000605528.2	protein_coding	protein_coding	protein_coding	protein_coding	4	84	2	2.02265	2.4209750000000003	2.8193	0.0449017	0.00285248	0.149888	0.0494641
chr7	119717055	119717155	3628508	0	-	0.3	(0.28,0.32]	chr7	337319	117	INTRON	INTRON	LINC02476	ENSG00000225546.6	ENST00000660268.1:ENST00000431071.5	lncRNA	lncRNA	lncRNA	lncRNA	13	221	2	1.97042	2.42085	2.87128	0.00318095	2.27059e-4	0.0519261	0.0138596
chr22	19430263	19430359	7554411	0	-	0.447917	(0.44,0.476]	chr22	772321	1	INTRON	INTRON	HIRA:C22orf39	ENSG00000100084.14:ENSG00000242259.9	ENST00000263208.5:ENST00000340170.8:ENST00000509549.5:ENST00000452818.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	120	2	2.10752	2.4208499999999997	2.73418	0.0045456	3.00142e-4	0.0595107	0.0155054
chr22	49625889	49625979	7602345	0	-	0.444444	(0.44,0.476]	chr22	778588	6	INTRON	INTRON	MIR3667HG	ENSG00000188511.13	ENST00000414287.5:ENST00000416411.1:ENST00000689875.1:ENST00000400023.5:ENST00000405854.5:ENST00000444628.2	lncRNA	lncRNA	lncRNA	lncRNA	9	120	2	2.10752	2.4208499999999997	2.73418	0.0045456	3.00142e-4	0.0595107	0.0155054
chr3	141389447	141389544	1524025	0	+	0.309278	(0.28,0.32]	chr3	158756	17	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:INTRON	ZBTB38	ENSG00000177311.12	ENST00000509842.5:ENST00000513619.5:ENST00000512276.5:ENST00000637706.1:ENST00000507657.1:ENST00000321464.7:ENST00000507722.5:ENST00000636289.1:ENST00000513249.1:ENST00000503809.5:ENST00000513258.5:ENST00000506623.1:ENST00000509883.5:ENST00000514251.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	55	2	1.83771	2.42083	3.00395	0.0591725	0.0101329	0.189982	0.0850389
chr9	125184538	125184637	4352373	0	-	0.313131	(0.28,0.32]	chr9	399581	122	INTRON	INTRON	PPP6C	ENSG00000119414.12	ENST00000373547.9:ENST00000415905.5:ENST00000451402.5:ENST00000456642.1	protein_coding	protein_coding	protein_coding	protein_coding	3	55	2	1.83771	2.42083	3.00395	0.0591725	0.0101329	0.189982	0.0850389
chr12	24859042	24859142	5297004	0	-	0.25	[0,0.28]	chr12	503853	87	INTRON	INTRON	BCAT1	ENSG00000060982.15	ENST00000261192.12:ENST00000538118.5:ENST00000342945.9:ENST00000539282.5:ENST00000539780.5:ENST00000544418.1:ENST00000612790.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:processed_transcript	2	45	2	2.20927	2.420825	2.63238	0.0794763	0.0259691	0.19979	0.133676
chr3	47141648	47141748	1681381	0	-	0.25	[0,0.28]	chr3	171624	146	INTRON	INTRON	SETD2	ENSG00000181555.22	ENST00000691544.1:ENST00000638947.2:ENST00000409792.4:ENST00000412450.1	protein_coding	protein_coding	protein_coding	protein_coding	2	45	2	2.20927	2.420825	2.63238	0.0794763	0.0259691	0.19979	0.133676
chr6	158571220	158571320	3021710	0	+	0.53	(0.515,0.57]	chr6	281792	106	INTRON	INTRON	TMEM181	ENSG00000146433.10	ENST00000367090.4:ENST00000684151.1	protein_coding	protein_coding	protein_coding	protein_coding	5	60	2	1.75372	2.4208049999999997	3.08789	0.0386904	4.83127e-4	0.14279	0.0199261
chr3	25752060	25752159	1642525	0	-	0.353535	(0.35,0.378]	chr3	168666	4	INTRON	INTRON	NGLY1	ENSG00000151092.18	ENST00000280700.10:ENST00000428257.5:ENST00000675217.1:ENST00000676225.1:ENST00000493324.5:ENST00000396649.7:ENST00000308710.9:ENST00000280699.13:ENST00000674841.1:ENST00000675234.1:ENST00000463611.2:ENST00000417874.6:ENST00000427041.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	64	2	1.90041	2.42076	2.94111	0.0145936	0.0104563	0.105992	0.0855102
chr2	188253831	188253931	1295059	0	-	0.25	[0,0.28]	chr2	135671	249	INTRON	INTRON	LINC01090	ENSG00000231689.3	ENST00000434418.2:ENST00000632331.1:ENST00000415357.1	lncRNA	lncRNA	lncRNA	lncRNA	2	45	2	2.27119	2.4207599999999996	2.57033	0.070351	0.0305273	0.184298	0.143385
chr5	177194619	177194719	2554312	0	+	0.21	[0,0.28]	chr5	243946	22	INTRON	INTRON	NSD1	ENSG00000165671.22	ENST00000508896.6:ENST00000689549.1:ENST00000354179.9:ENST00000686993.1:ENST00000689326.1:ENST00000439151.7:ENST00000510954.6:ENST00000689345.1:ENST00000347982.9:ENST00000687453.1:ENST00000685206.1:ENST00000638627.3:ENST00000644863.2:ENST00000688613.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	45	2	2.27119	2.4207599999999996	2.57033	0.070351	0.0305273	0.184298	0.143385
chr1	67212488	67212587	140839	0	+	0.434343	(0.408,0.44]	chr1	15770	44	INTRON	INTRON	IL23R	ENSG00000162594.16	ENST00000637002.1:ENST00000347310.10:ENST00000425614.3:ENST00000473881.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	69	2	2.30838	2.4207549999999998	2.53313	0.00739595	0.00547703	0.074277	0.0671198
chr1	28381120	28381220	55947	0	+	0.52	(0.515,0.57]	chr1	7266	109	INTRON	INTRON	PHACTR4	ENSG00000204138.13	ENST00000633371.1:ENST00000632202.1:ENST00000632421.1:ENST00000463428.5:ENST00000373839.8:ENST00000493669.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	28	2	2.23241	2.4207	2.60899	0.0581268	0.0232669	0.188651	0.118148
chr10	22570343	22570442	4579049	0	-	0.535354	(0.515,0.57]	chr10	421992	9	INTRON	INTRON	PIP4K2A	ENSG00000150867.14	ENST00000376573.9:ENST00000323883.11:ENST00000545335.5:ENST00000604912.1:ENST00000422321.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	28	2	2.23241	2.4207	2.60899	0.0581268	0.0232669	0.188651	0.118148
chr11	63651136	63651236	4962621	0	-	0.55	(0.515,0.57]	chr11	467167	42	INTRON	INTRON	ATL3	ENSG00000184743.13	ENST00000398868.8:ENST00000538786.1	protein_coding	protein_coding	protein_coding	protein_coding	2	28	2	2.23241	2.4207	2.60899	0.0581268	0.0232669	0.188651	0.118148
chr12	31308808	31308908	5302682	0	-	0.54	(0.515,0.57]	chr12	504668	33	INTRON	INTRON	SINHCAF	ENSG00000139146.14	ENST00000337682.9:ENST00000539409.5:ENST00000454658.6:ENST00000542983.1:ENST00000539004.5:ENST00000543615.1:ENST00000536836.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	28	2	2.23241	2.4207	2.60899	0.0581268	0.0232669	0.188651	0.118148
chr12	53587575	53587674	5328627	0	-	0.545455	(0.515,0.57]	chr12	508398	346	INTRON	INTRON	ATF7	ENSG00000170653.19	ENST00000548446.6:ENST00000420353.7:ENST00000456903.8:ENST00000588232.5:ENST00000551480.2:ENST00000588078.5:ENST00000591397.1:ENST00000548118.6	protein_coding	protein_coding	protein_coding	protein_coding	2	28	2	2.23241	2.4207	2.60899	0.0581268	0.0232669	0.188651	0.118148
chr16	69156393	69156493	6377504	0	+	0.53	(0.515,0.57]	chr16	612957	4	SS5_PROX	SS5_PROX:INTRON	UTP4	ENSG00000141076.18	ENST00000562237.5:ENST00000314423.12:ENST00000352319.8:ENST00000563094.5:ENST00000567500.1	protein_coding	protein_coding	protein_coding	protein_coding	2	28	2	2.23241	2.4207	2.60899	0.0581268	0.0232669	0.188651	0.118148
chr20	62029706	62029806	7360556	0	-	0.53	(0.515,0.57]	chr20	750714	146	INTRON	INTRON	TAF4	ENSG00000130699.20	ENST00000252996.9:ENST00000608887.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	28	2	2.23241	2.4207	2.60899	0.0581268	0.0232669	0.188651	0.118148
chr4	128820355	128820455	2044372	0	+	0.52	(0.515,0.57]	chr4	202994	35	INTRON	INTRON	JADE1	ENSG00000077684.16	ENST00000226319.11:ENST00000511647.5:ENST00000452328.6:ENST00000504089.5:ENST00000512960.5:ENST00000503785.5:ENST00000514740.1:ENST00000610919.4:ENST00000510308.5:ENST00000511925.5:ENST00000413543.6:ENST00000611140.4:ENST00000507833.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	28	2	2.23241	2.4207	2.60899	0.0581268	0.0232669	0.188651	0.118148
chr4	139362437	139362536	2050319	0	+	0.535354	(0.515,0.57]	chr4	203370	1	INTRON	INTRON	NAA15	ENSG00000164134.13	ENST00000296543.10:ENST00000398947.1	protein_coding	protein_coding	protein_coding	protein_coding	2	28	2	2.23241	2.4207	2.60899	0.0581268	0.0232669	0.188651	0.118148
chr6	109452850	109452938	3186030	0	-	0.556818	(0.515,0.57]	chr6	296758	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MICAL1	ENSG00000135596.18	ENST00000358807.8:ENST00000358577.7:ENST00000456101.6:ENST00000630715.2:ENST00000431946.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	28	2	2.23241	2.4207	2.60899	0.0581268	0.0232669	0.188651	0.118148
chr11	47169295	47169384	4948829	0	-	0.460674	(0.44,0.476]	chr11	463892	1	EXON_LNCRNA	EXON_LNCRNA:INTRON	ARFGAP2:ENSG00000270060	ENSG00000149182.15:ENSG00000270060.1	ENST00000426335.6:ENST00000627920.2:ENST00000524782.6:ENST00000395449.7:ENST00000533243.5:ENST00000527776.5:ENST00000526342.5:ENST00000527927.5:ENST00000532478.5:ENST00000532438.5:ENST00000529455.5:ENST00000524412.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:nonsense_mediated_decay:lncRNA:processed_transcript	9	120	2	2.08356	2.4206649999999996	2.75777	0.00502853	2.63233e-4	0.0619934	0.0143626
chr4	78788003	78788103	1981501	0	+	0.29	(0.28,0.32]	chr4	198463	109	INTRON	INTRON	BMP2K	ENSG00000138756.19	ENST00000389010.7:ENST00000502613.3:ENST00000502871.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	135	2	2.15291	2.42065	2.68839	0.00374651	0.00201131	0.0562379	0.04086
chr19	46783413	46783504	7195370	0	-	0.32967	(0.32,0.35]	chr19	728992	5	INTRON	INTRON	SLC1A5	ENSG00000105281.12	ENST00000542575.6:ENST00000594991.5:ENST00000434726.6:ENST00000412532.6:ENST00000593713.1:ENST00000598022.1	protein_coding	protein_coding	protein_coding	protein_coding	9	144	2	1.79633	2.420615	3.0449	0.0177594	6.69583e-5	0.105629	0.0067809
chr2	227530690	227530790	1026250	0	+	0.32	(0.28,0.32]	chr2	109590	2	SS3_PROX	SS3_PROX:INTRON	AGFG1	ENSG00000173744.18	ENST00000409979.6:ENST00000310078.13:ENST00000409315.5:ENST00000373671.7:ENST00000409171.5:ENST00000456594.1	protein_coding	protein_coding	protein_coding	protein_coding	6	101	2	2.3365	2.42056	2.50462	0.0102735	0.00286158	0.0850389	0.0494641
chr22	20519395	20519495	7479466	0	+	0.44	(0.408,0.44]	chr22	762956	4	SS5_PROX	SS5_PROX:INTRON	MED15	ENSG00000099917.17	ENST00000445987.5:ENST00000444094.5:ENST00000414658.5:ENST00000486656.5:ENST00000433831.5:ENST00000432052.5:ENST00000292733.11:ENST00000263205.11:ENST00000477824.5:ENST00000406969.5:ENST00000382974.6:ENST00000441501.5:ENST00000438962.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	121	2	2.31338	2.4205300000000003	2.52768	0.00322111	4.47322e-4	0.0507087	0.0191768
chr5	175523015	175523114	2550980	0	+	0.484848	(0.476,0.515]	chr5	243553	7	UTR3	UTR3:EXON_MRNA:INTRON	SFXN1	ENSG00000164466.13	ENST00000321442.10:ENST00000507823.5:ENST00000421887.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	69	2	2.31726	2.4205300000000003	2.5238	0.015077	0.00218334	0.0994339	0.0435144
chr1	155679755	155679827	563231	0	-	0.236111	[0,0.28]	chr1	67193	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	YY1AP1	ENSG00000163374.20	ENST00000368339.9:ENST00000295566.8:ENST00000368330.6:ENST00000436865.5:ENST00000359205.9:ENST00000407221.5:ENST00000404643.5:ENST00000361140.8:ENST00000361831.9:ENST00000347088.9:ENST00000354691.9:ENST00000368340.9:ENST00000311573.9:ENST00000355499.9:ENST00000405763.7:ENST00000493625.5:ENST00000476093.5:ENST00000443231.5:ENST00000496324.5:ENST00000476027.5:ENST00000454523.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	74	2	1.75741	2.420505	3.0836	0.0424454	0.00940284	0.161763	0.0817766
chr1	246642137	246642237	350750	0	+	0.28	[0,0.28]	chr1	40532	1	SS5_PROX	SS5_PROX:INTRON	CNST	ENSG00000162852.14	ENST00000483271.1:ENST00000366513.9:ENST00000366512.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	74	2	1.75741	2.420505	3.0836	0.0424454	0.00940284	0.161763	0.0817766
chr14	30992173	30992273	5857531	0	-	0.5	(0.476,0.515]	chr14	556508	278	INTRON	INTRON	STRN3	ENSG00000196792.12	ENST00000355683.9:ENST00000357479.10:ENST00000555358.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	59	2	1.95469	2.420495	2.8863	0.0115753	0.0111679	0.0962115	0.0877435
chr1	246187242	246187342	677505	0	-	0.4	(0.378,0.408]	chr1	79726	3	SS3_PROX	SS3_PROX:INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000391836.3:ENST00000453676.5:ENST00000462422.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	44	2	2.11103	2.42048	2.72993	0.0266911	0.0188736	0.134419	0.108861
chr3	47903500	47903598	1685630	0	-	0.387755	(0.378,0.408]	chr3	172207	1	INTRON	INTRON	MAP4	ENSG00000047849.22	ENST00000429422.5:ENST00000683076.1:ENST00000395734.7:ENST00000426837.6:ENST00000360240.10:ENST00000383736.3:ENST00000482752.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	44	2	2.11103	2.42048	2.72993	0.0266911	0.0188736	0.134419	0.108861
chr3	197858433	197858533	1598408	0	+	0.38	(0.378,0.408]	chr3	165644	2	SS3_PROX	SS3_PROX:INTRON	LRCH3	ENSG00000186001.14	ENST00000438796.6:ENST00000428136.2:ENST00000425562.7:ENST00000441090.6:ENST00000414675.6:ENST00000334859.8:ENST00000461674.5:ENST00000452660.5:ENST00000433298.5:ENST00000481048.5:ENST00000466845.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	44	2	2.11103	2.42048	2.72993	0.0266911	0.0188736	0.134419	0.108861
chr5	97013247	97013347	2435608	0	+	0.39	(0.378,0.408]	chr5	234040	2	SS3_PROX	SS3_PROX:INTRON	LNPEP	ENSG00000113441.16	ENST00000231368.10:ENST00000395770.3	protein_coding	protein_coding	protein_coding	protein_coding	3	44	2	2.11103	2.42048	2.72993	0.0266911	0.0188736	0.134419	0.108861
chr17	27300870	27300969	6580600	0	+	0.434343	(0.408,0.44]	chr17	639604	32	INTRON	INTRON	WSB1	ENSG00000109046.15	ENST00000581440.5:ENST00000578312.5:ENST00000583742.1:ENST00000467843.6:ENST00000579733.5:ENST00000583193.5:ENST00000262394.7:ENST00000427287.6:ENST00000581185.5:ENST00000584354.1:ENST00000583786.5:ENST00000581089.1:ENST00000348811.6:ENST00000582208.1:ENST00000584114.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	149	2	2.10638	2.42047	2.73456	0.00465298	7.1837e-5	0.0600108	0.00705244
chr1	10107574	10107674	19883	0	+	0.5	(0.476,0.515]	chr1	1881	2	SS5_PROX	SS5_PROX:INTRON	UBE4B	ENSG00000130939.20	ENST00000672724.1:ENST00000253251.12:ENST00000343090.11	protein_coding	protein_coding	protein_coding	protein_coding	8	106	2	2.18179	2.4204499999999998	2.65911	0.00322689	0.00116074	0.0507087	0.0314098
chr4	77021445	77021542	1976884	0	+	0.515464	(0.515,0.57]	chr4	198202	9	EXON_MRNA	EXON_MRNA:INTRON	SEPTIN11	ENSG00000138758.12	ENST00000502584.5:ENST00000264893.11:ENST00000510641.5:ENST00000505788.5:ENST00000512575.5:ENST00000510515.5:ENST00000506047.1:ENST00000506731.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	49	2	2.21273	2.4204499999999998	2.62817	0.0196151	0.004048	0.109486	0.0578376
chr19	15296046	15296146	7147041	0	-	0.5	(0.476,0.515]	chr19	721965	157	INTRON	INTRON	BRD4	ENSG00000141867.19	ENST00000679869.1:ENST00000360016.9:ENST00000594841.5:ENST00000597315.5:ENST00000601941.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	71	2	1.59493	2.420445	3.24596	0.0213255	0.00322919	0.123504	0.0507087
chr7	4693662	4693762	3270029	0	+	0.48	(0.476,0.515]	chr7	303884	104	INTRON	INTRON	FOXK1	ENSG00000164916.11	ENST00000328914.5	protein_coding	protein_coding	protein_coding	protein_coding	7	71	2	1.59493	2.420445	3.24596	0.0213255	0.00322919	0.123504	0.0507087
chr1	63521731	63521831	471672	0	-	0.44	(0.408,0.44]	chr1	57000	112	INTRON	INTRON	ITGB3BP	ENSG00000142856.17	ENST00000271002.15:ENST00000489099.5:ENST00000371092.7:ENST00000460394.5:ENST00000462285.5:ENST00000489863.5:ENST00000465781.5:ENST00000460251.5:ENST00000478138.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	43	2	1.81572	2.420425	3.02513	0.0626779	0.0059965	0.175915	0.0700606
chr1	161518840	161518939	235226	0	+	0.555556	(0.515,0.57]	chr1	28351	8	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	FCGR2A:ENSG00000289273	ENSG00000143226.15:ENSG00000289273.1	ENST00000271450.12:ENST00000467525.5:ENST00000459885.1:ENST00000491841.1:ENST00000691016.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:nonsense_mediated_decay:lncRNA:processed_transcript	5	60	2	2.3252100000000002	2.4204100000000004	2.51561	0.00635044	0.00525266	0.0723103	0.0633615
chr12	120157662	120157748	5432859	0	-	0.430233	(0.408,0.44]	chr12	519218	3	SS5_PROX	SS5_PROX:INTRON	GCN1	ENSG00000089154.11	ENST00000300648.7	protein_coding	protein_coding	protein_coding	protein_coding	3	43	2	1.88062	2.420345	2.96007	0.0534548	0.00753901	0.162935	0.0773151
chr14	102634810	102634910	5822955	0	+	0.43	(0.408,0.44]	chr14	552490	411	INTRON	INTRON	RCOR1	ENSG00000089902.10	ENST00000262241.7	protein_coding	protein_coding	protein_coding	protein_coding	3	43	2	1.88062	2.420345	2.96007	0.0534548	0.00753901	0.162935	0.0773151
chr15	63811433	63811533	6200680	0	-	0.44	(0.408,0.44]	chr15	591445	305	INTRON	INTRON	HERC1	ENSG00000103657.14	ENST00000443617.7:ENST00000561400.1:ENST00000559886.1:ENST00000558532.1:ENST00000560462.1:ENST00000560316.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	43	2	1.88062	2.420345	2.96007	0.0534548	0.00753901	0.162935	0.0773151
chr17	37329286	37329386	6762270	0	-	0.41	(0.408,0.44]	chr17	664949	3	SS3_PROX	SS3_PROX:INTRON	ACACA	ENSG00000278540.5	ENST00000616317.5:ENST00000614428.4:ENST00000613146.4:ENST00000615229.4:ENST00000621960.1:ENST00000617548.1:ENST00000616352.4:ENST00000614789.4:ENST00000614438.1:ENST00000612007.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:non_stop_decay:nonsense_mediated_decay	3	43	2	1.88062	2.420345	2.96007	0.0534548	0.00753901	0.162935	0.0773151
chr20	526595	526695	7303806	0	-	0.43	(0.408,0.44]	chr20	743563	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	CSNK2A1	ENSG00000101266.19	ENST00000646561.1:ENST00000217244.9:ENST00000643660.1:ENST00000645623.1:ENST00000400227.8:ENST00000349736.10:ENST00000644170.1:ENST00000643700.1:ENST00000645910.1:ENST00000645840.1:ENST00000646305.1:ENST00000645260.1:ENST00000642689.1:ENST00000645234.1:ENST00000646814.1:ENST00000646477.1:ENST00000644885.1:ENST00000644710.1:ENST00000647155.1:ENST00000644003.1:ENST00000645249.1:ENST00000647026.1:ENST00000400217.7:ENST00000647348.1:ENST00000643600.1:ENST00000643680.1:ENST00000460062.7:ENST00000643968.1:ENST00000644177.1:ENST00000609525.2:ENST00000645091.1:ENST00000609606.6:ENST00000608066.6:ENST00000646908.1:ENST00000645187.1:ENST00000642160.1:ENST00000608490.2:ENST00000643910.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	43	2	1.88062	2.420345	2.96007	0.0534548	0.00753901	0.162935	0.0773151
chr20	1145877	1145976	7220009	0	+	0.414141	(0.408,0.44]	chr20	733664	102	INTRON	INTRON	PSMF1	ENSG00000125818.18	ENST00000652336.1:ENST00000333082.7:ENST00000479715.5:ENST00000246015.8:ENST00000335877.11:ENST00000484891.1:ENST00000435720.5:ENST00000381898.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	43	2	1.88062	2.420345	2.96007	0.0534548	0.00753901	0.162935	0.0773151
chr20	5192420	5192519	7228829	0	+	0.434343	(0.408,0.44]	chr20	734675	23	UTR3	UTR3:EXON_MRNA	CDS2	ENSG00000101290.14	ENST00000460006.6	protein_coding	protein_coding	protein_coding	protein_coding	3	43	2	1.88062	2.420345	2.96007	0.0534548	0.00753901	0.162935	0.0773151
chr20	62029906	62030006	7360558	0	-	0.55	(0.515,0.57]	chr20	750714	148	INTRON	INTRON	TAF4	ENSG00000130699.20	ENST00000252996.9:ENST00000608887.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	49	2	2.38476	2.420305	2.45585	0.0110593	0.00797827	0.0873897	0.0798772
chr1	183518120	183518220	273975	0	+	0.49	(0.476,0.515]	chr1	32054	3	SS5_PROX	SS5_PROX:INTRON	SMG7	ENSG00000116698.22	ENST00000440812.7:ENST00000367537.7:ENST00000688051.1:ENST00000685780.1:ENST00000508461.5:ENST00000347615.6:ENST00000419169.5:ENST00000444547.6:ENST00000507469.5:ENST00000515829.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	46	2	2.38442	2.4202	2.45598	0.0417472	0.00945755	0.161736	0.0817766
chr3	154307973	154308071	1843369	0	-	0.377551	(0.35,0.378]	chr3	185450	13	INTRON	INTRON	DHX36	ENSG00000174953.14	ENST00000496811.6:ENST00000308361.10:ENST00000329463.9:ENST00000481941.5	protein_coding	protein_coding	protein_coding	protein_coding	4	56	2	2.11531	2.42014	2.72497	0.0198266	0.0119629	0.109608	0.0962115
chr1	100007446	100007543	171283	0	+	0.319588	(0.28,0.32]	chr1	18548	4	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	SLC35A3:ENSG00000283761	ENSG00000117620.15:ENSG00000283761.1	ENST00000638371.1:ENST00000427993.7:ENST00000533028.8:ENST00000639221.1:ENST00000639807.1:ENST00000638336.1:ENST00000638792.1:ENST00000638968.1:ENST00000465289.6:ENST00000640715.1:ENST00000640726.1:ENST00000639040.1:ENST00000639037.1:ENST00000639994.1:ENST00000640360.1:ENST00000640178.1:ENST00000638988.1:ENST00000640732.1:ENST00000638779.1:ENST00000638929.1:ENST00000639088.1:ENST00000640600.1:ENST00000638338.1:ENST00000639171.1:ENST00000638876.1:ENST00000640238.1:ENST00000370155.9:ENST00000640357.1:ENST00000370153.6:ENST00000422078.1:ENST00000639148.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	54	2	1.86684	2.420085	2.97333	0.0605813	0.00857834	0.171122	0.083729
chr19	57862927	57863026	7106167	0	+	0.464646	(0.44,0.476]	chr19	713245	29	UTR3	UTR3:EXON_MRNA	ZNF587	ENSG00000198466.12	ENST00000339656.8:ENST00000419854.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	15	197	2	2.27117	2.4200749999999998	2.56898	7.22667e-4	1.20232e-4	0.0247245	0.00938389
chr1	89557019	89557118	157723	0	+	0.373737	(0.35,0.378]	chr1	17171	67	INTRON	INTRON	LRRC8B	ENSG00000197147.15	ENST00000330947.7:ENST00000439853.6:ENST00000449440.5:ENST00000640258.1:ENST00000639264.1	protein_coding	protein_coding	protein_coding	protein_coding	3	48	2	2.19034	2.42007	2.6498	0.023941	0.0210137	0.122348	0.119443
chr17	48575406	48575506	6791019	0	-	0.45	(0.44,0.476]	chr17	669986	3	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	HOXB3	ENSG00000120093.12	ENST00000498678.6:ENST00000472863.5:ENST00000460160.5:ENST00000489475.5:ENST00000476342.1:ENST00000465120.3:ENST00000464266.1:ENST00000552000.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	69	2	1.85904	2.42002	2.981	0.029889	9.31193e-4	0.129138	0.0278746
chr4	118622518	118622617	2025055	0	+	0.474747	(0.44,0.476]	chr4	201343	6	INTRON	INTRON	ENSG00000260404	ENSG00000260404.4	ENST00000567913.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	5	59	2	1.38039	2.41998	3.45957	0.0762718	0.00106385	0.195539	0.0300133
chr1	1221549	1221649	358871	0	-	0.52	(0.515,0.57]	chr1	41400	3	INTRON	INTRON	SDF4	ENSG00000078808.19	ENST00000660930.1:ENST00000465727.5:ENST00000263741.12:ENST00000360001.12:ENST00000403997.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	116	2	2.25019	2.41995	2.58971	0.00169679	3.3987e-4	0.0381936	0.0170719
chr1	226180092	226180192	646992	0	-	0.5	(0.476,0.515]	chr1	76667	137	INTRON	INTRON	ACBD3	ENSG00000182827.9	ENST00000366812.6	protein_coding	protein_coding	protein_coding	protein_coding	4	52	2	2.20789	2.419785	2.63168	0.0237106	0.00820497	0.118716	0.081115
chr16	23424051	23424149	6463791	0	-	0.5	(0.476,0.515]	chr16	623765	49	INTRON	INTRON	COG7	ENSG00000168434.13	ENST00000307149.10	protein_coding	protein_coding	protein_coding	protein_coding	4	52	2	2.20789	2.419785	2.63168	0.0237106	0.00820497	0.118716	0.081115
chr2	147970441	147970541	1242268	0	-	0.32	(0.28,0.32]	chr2	131858	112	INTRON	INTRON	ORC4	ENSG00000115947.14	ENST00000392857.10:ENST00000264169.6:ENST00000536575.5:ENST00000535373.5:ENST00000540442.5:ENST00000461711.5:ENST00000496670.6:ENST00000490200.5:ENST00000416719.5:ENST00000457954.5:ENST00000440042.1:ENST00000495601.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	54	2	2.38391	2.41968	2.45545	0.0438092	0.0122525	0.14901	0.0969406
chr3	180967550	180967650	1569171	0	+	0.3	(0.28,0.32]	chr3	162434	1	SS3_PROX	SS3_PROX:INTRON	FXR1	ENSG00000114416.18	ENST00000305586.11:ENST00000475315.5:ENST00000357559.9:ENST00000468861.5:ENST00000491062.5:ENST00000445140.6:ENST00000472339.5:ENST00000480918.5:ENST00000498658.5:ENST00000476672.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	54	2	2.38391	2.41968	2.45545	0.0438092	0.0122525	0.14901	0.0969406
chr7	77705440	77705540	3343159	0	+	0.32	(0.28,0.32]	chr7	311432	77	INTRON	INTRON	RSBN1L	ENSG00000187257.16	ENST00000334955.13:ENST00000445288.5	protein_coding	protein_coding	protein_coding	protein_coding	3	54	2	2.38391	2.41968	2.45545	0.0438092	0.0122525	0.14901	0.0969406
chr7	139047294	139047394	3655781	0	-	0.41	(0.408,0.44]	chr7	339380	39	UTR3	UTR3:EXON_MRNA	ZC3HAV1	ENSG00000105939.14	ENST00000242351.10:ENST00000464606.5:ENST00000680309.1	protein_coding	protein_coding	protein_coding	protein_coding	5	69	2	2.26617	2.4195599999999997	2.57295	0.00649402	0.00640423	0.0734343	0.0694534
chr18	9108966	9109066	6868656	0	+	0.4	(0.378,0.408]	chr18	680510	36	INTRON	INTRON	NDUFV2	ENSG00000178127.13	ENST00000577703.1:ENST00000318388.11:ENST00000583375.5:ENST00000400033.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	18	234	2	2.39853	2.4195450000000003	2.44056	0.00133926	4.82818e-5	0.0335551	0.00567485
chr10	68414530	68414624	4639174	0	-	0.319149	(0.28,0.32]	chr10	426626	6	UTR3	UTR3:EXON_MRNA	DNA2	ENSG00000138346.15	ENST00000358410.8:ENST00000551118.6	protein_coding	protein_coding	protein_coding	protein_coding	5	89	2	2.20515	2.41947	2.63379	0.011946	0.00503861	0.0899583	0.0646039
chr18	31915971	31916071	6961125	0	-	0.53	(0.515,0.57]	chr18	688769	3	SS5_PROX	SS5_PROX:INTRON	TRAPPC8	ENSG00000153339.15	ENST00000283351.10:ENST00000580104.5:ENST00000582539.5:ENST00000582513.5:ENST00000578658.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	68	2	2.34988	2.4194500000000003	2.48902	0.00760558	0.00194926	0.0749571	0.0410995
chr8	81704020	81704120	3979392	0	-	0.28	[0,0.28]	chr8	364616	5	INTRON	INTRON	ZFAND1	ENSG00000104231.11	ENST00000524305.5:ENST00000220669.10:ENST00000523096.5:ENST00000522520.5:ENST00000522032.1:ENST00000519464.5:ENST00000521895.5:ENST00000521287.5:ENST00000523431.5:ENST00000520635.5:ENST00000519523.5:ENST00000517588.5:ENST00000520604.5:ENST00000523361.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	85	2	1.90035	2.419425	2.9385	0.0173564	0.0142776	0.112318	0.0963703
chr1	167937752	167937851	248499	0	+	0.353535	(0.35,0.378]	chr1	29536	1	INTRON	INTRON	DCAF6	ENSG00000143164.16	ENST00000450548.5:ENST00000470919.5:ENST00000432587.6:ENST00000367843.7:ENST00000470721.5:ENST00000367840.4:ENST00000312263.10:ENST00000455334.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	104	2	1.81613	2.419375	3.02262	0.00932362	0.00119456	0.085606	0.0315806
chr6	163439601	163439701	3031954	0	+	0.46	(0.44,0.476]	chr6	282563	102	INTRON	INTRON	QKI	ENSG00000112531.17	ENST00000361758.8:ENST00000453779.6:ENST00000275262.11:ENST00000392127.6:ENST00000361752.8:ENST00000361195.6:ENST00000424802.7:ENST00000545607.5:ENST00000544436.5:ENST00000537041.5:ENST00000537124.5:ENST00000545346.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	70	2	1.71574	2.41936	3.12298	0.045256	4.66209e-4	0.149888	0.0195589
chr3	16276895	16276995	1374995	0	+	0.37	(0.35,0.378]	chr3	144974	42	INTRON	INTRON	OXNAD1	ENSG00000154814.14	ENST00000627468.2:ENST00000605932.5:ENST00000442255.5:ENST00000435829.6:ENST00000285083.10:ENST00000452581.5:ENST00000606098.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	47	2	2.04224	2.4193350000000002	2.79643	0.0363073	0.013543	0.138959	0.101363
chr19	2272539	2272636	6997105	0	+	0.649485	(0.57,1]	chr19	693662	7	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	OAZ1	ENSG00000104904.12	ENST00000590943.6:ENST00000602676.6:ENST00000581150.6:ENST00000582888.8:ENST00000593012.1:ENST00000588673.3:ENST00000586054.2:ENST00000589361.2:ENST00000592727.3:ENST00000589739.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	34	212	2	2.25814	2.4193249999999997	2.58051	1.02856e-5	9.5543e-6	0.00237264	0.00235018
chr2	9499700	9499799	1063906	0	-	0.383838	(0.378,0.408]	chr2	113472	6	EXON_MRNA	EXON_MRNA:INTRON	ADAM17	ENSG00000151694.14	ENST00000310823.8:ENST00000648548.1:ENST00000649227.1:ENST00000648857.1:ENST00000647979.1:ENST00000647610.1:ENST00000650116.1:ENST00000649686.1:ENST00000649068.1:ENST00000647622.1:ENST00000649972.1:ENST00000650241.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	71	2	2.04909	2.419275	2.78946	0.0158859	0.0048937	0.101453	0.0641889
chr6	167911890	167911981	3035204	0	+	0.505495	(0.476,0.515]	chr6	282794	5	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	AFDN	ENSG00000130396.21	ENST00000683244.1:ENST00000351017.9:ENST00000344191.8:ENST00000392112.5:ENST00000392108.7:ENST00000400822.7:ENST00000447894.6:ENST00000366809.6:ENST00000366806.6:ENST00000423229.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	14	169	2	2.1804	2.41927	2.65814	6.21095e-4	4.6376e-4	0.0229151	0.0195313
chr6	17648762	17648862	3065619	0	-	0.4	(0.378,0.408]	chr6	284813	2	SS5_PROX	SS5_PROX:INTRON	NUP153	ENSG00000124789.12	ENST00000613258.4:ENST00000537253.5:ENST00000262077.3	protein_coding	protein_coding	protein_coding	protein_coding	11	147	2	2.31091	2.41925	2.52759	0.00131675	5.71091e-4	0.0331539	0.0217398
chr17	30752904	30753004	6590017	0	+	0.42	(0.408,0.44]	chr17	640860	92	INTRON	INTRON	SUZ12P1	ENSG00000264538.7	ENST00000578070.5:ENST00000579526.5:ENST00000690405.1:ENST00000497969.6:ENST00000578195.6:ENST00000582557.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	12	140	2	1.84697	2.41921	2.99145	0.00346972	3.14287e-4	0.0539943	0.0163194
chr20	47529106	47529206	7281269	0	+	0.32	(0.28,0.32]	chr20	740469	267	INTRON	INTRON	NCOA3	ENSG00000124151.19	ENST00000371998.8:ENST00000372004.7:ENST00000371997.3	protein_coding	protein_coding	protein_coding	protein_coding	4	65	2	2.1076	2.419185	2.73077	0.0220748	0.0133585	0.115395	0.100772
chr3	143015379	143015473	1529216	0	+	0.308511	(0.28,0.32]	chr3	159347	6	INTRON	INTRON	U2SURP	ENSG00000163714.18	ENST00000600150.5:ENST00000488497.7:ENST00000493782.5:ENST00000473835.7:ENST00000461591.5:ENST00000493598.6:ENST00000463563.6:ENST00000470400.5:ENST00000465175.2:ENST00000485374.5:ENST00000491827.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	65	2	2.1076	2.419185	2.73077	0.0220748	0.0133585	0.115395	0.100772
chr10	97474115	97474214	4676245	0	-	0.353535	(0.35,0.378]	chr10	431150	29	INTRON	INTRON	MMS19	ENSG00000155229.21	ENST00000370782.6:ENST00000438925.7:ENST00000415383.5:ENST00000355839.10:ENST00000327238.14:ENST00000437002.5:ENST00000441194.5:ENST00000483626.5:ENST00000422685.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	67	2	2.04358	2.41915	2.79472	0.0329533	0.00303911	0.145171	0.0493883
chr2	107742745	107742845	1205977	0	-	0.56	(0.515,0.57]	chr2	128532	251	INTRON	INTRON	LINC01885:ENSG00000286769	ENSG00000237880.2:ENSG00000286769.1	ENST00000654481.1:ENST00000669817.1	lncRNA	lncRNA	lncRNA	lncRNA	6	68	2	1.84511	2.419135	2.99316	0.0167182	9.21623e-4	0.110511	0.0278396
chr11	2944528	2944626	4891493	0	-	0.683673	(0.57,1]	chr11	458257	2	UTR3	UTR3:EXON_MRNA	NAP1L4	ENSG00000205531.13	ENST00000620138.4:ENST00000380542.9:ENST00000469805.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	19	122	2	2.08269	2.41911	2.75553	2.89141e-4	1.59708e-5	0.0150936	0.0032103
chr9	136416670	136416763	4221349	0	+	0.27957	[0,0.28]	chr9	387534	4	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PMPCA	ENSG00000165688.12	ENST00000612553.4:ENST00000371717.8:ENST00000622209.4:ENST00000399219.7:ENST00000620895.1:ENST00000462616.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	75	2	1.69895	2.419105	3.13926	0.0568939	0.00563224	0.167723	0.0678837
chr1	109406652	109406751	521102	0	-	0.30303	(0.28,0.32]	chr1	61220	42	INTRON	INTRON	PSMA5	ENSG00000143106.13	ENST00000271308.9:ENST00000490870.5:ENST00000538610.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	66	2	1.76048	2.4189600000000002	3.07744	0.0450149	0.00604536	0.149888	0.0700813
chr1	23076268	23076364	44346	0	+	0.291667	(0.28,0.32]	chr1	5324	7	UTR3	UTR3:EXON_MRNA:INTRON	KDM1A	ENSG00000004487.18	ENST00000692214.1:ENST00000686934.1:ENST00000689853.1:ENST00000465864.2:ENST00000691256.1:ENST00000688122.1:ENST00000692056.1:ENST00000692853.1:ENST00000689366.1:ENST00000686270.1:ENST00000685102.1:ENST00000690627.1:ENST00000686771.1:ENST00000692209.1:ENST00000686339.1:ENST00000691813.1:ENST00000693156.1:ENST00000688235.1:ENST00000692975.1:ENST00000687202.1:ENST00000691682.1:ENST00000691404.1:ENST00000691694.1:ENST00000688680.1:ENST00000356634.7:ENST00000400181.9:ENST00000689677.1:ENST00000686793.1:ENST00000689971.1:ENST00000688943.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	87	2	2.05785	2.418945	2.78004	0.0193244	0.00560246	0.108861	0.0678837
chr10	69172447	69172545	4445044	0	+	0.326531	(0.32,0.35]	chr10	410068	13	UTR3	UTR3:EXON_MRNA	VPS26A	ENSG00000122958.15	ENST00000373382.5:ENST00000395098.5:ENST00000263559.11	protein_coding	protein_coding	protein_coding	protein_coding	4	60	2	1.55682	2.418945	3.28107	0.0724487	0.00262488	0.188101	0.0470772
chr17	46080243	46080343	6783734	0	-	0.37	(0.35,0.378]	chr17	669193	122	INTRON	INTRON	KANSL1	ENSG00000120071.15	ENST00000574590.6:ENST00000572904.6:ENST00000432791.7:ENST00000575318.6:ENST00000638275.1:ENST00000262419.10:ENST00000648792.1:ENST00000639531.1:ENST00000639150.1:ENST00000639853.1:ENST00000571698.2:ENST00000639375.1:ENST00000577114.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	68	2	1.84611	2.41892	2.99173	0.0204148	0.00713365	0.110862	0.0756118
chr11	68496459	68496559	4817690	0	+	0.52	(0.515,0.57]	chr11	448907	353	INTRON	INTRON	PPP6R3	ENSG00000110075.15	ENST00000530427.5:ENST00000528635.5:ENST00000529907.5:ENST00000533127.5:ENST00000534534.5:ENST00000529344.5:ENST00000524845.5:ENST00000393800.7:ENST00000265637.8:ENST00000524904.5:ENST00000393801.7:ENST00000265636.9:ENST00000529710.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	67	2	2.03368	2.41884	2.804	0.00803127	0.00215855	0.0803474	0.0417866
chr1	23075568	23075666	44338	0	+	0.122449	[0,0.28]	chr1	5322	12	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	KDM1A	ENSG00000004487.18	ENST00000692214.1:ENST00000686934.1:ENST00000689853.1:ENST00000465864.2:ENST00000691256.1:ENST00000688122.1:ENST00000692056.1:ENST00000692853.1:ENST00000689366.1:ENST00000686270.1:ENST00000685102.1:ENST00000690627.1:ENST00000686771.1:ENST00000692209.1:ENST00000686339.1:ENST00000691813.1:ENST00000693156.1:ENST00000688235.1:ENST00000692975.1:ENST00000687202.1:ENST00000691682.1:ENST00000691404.1:ENST00000691694.1:ENST00000688680.1:ENST00000356634.7:ENST00000400181.9:ENST00000689677.1:ENST00000686793.1:ENST00000689971.1:ENST00000688943.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	46	2	2.29142	2.41883	2.54624	0.0592143	0.0388449	0.189982	0.143072
chr10	35361268	35361368	4424750	0	+	0.23	[0,0.28]	chr10	407899	237	INTRON	INTRON	CCNY	ENSG00000108100.18	ENST00000374706.5:ENST00000490012.6:ENST00000493157.6:ENST00000374704.8:ENST00000265375.13:ENST00000339497.7:ENST00000492478.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	46	2	2.29142	2.41883	2.54624	0.0592143	0.0388449	0.189982	0.143072
chr2	47785372	47785471	777060	0	+	0.565657	(0.515,0.57]	chr2	87411	5	INTRON	INTRON	MSH6	ENSG00000116062.18	ENST00000652107.1:ENST00000445503.5:ENST00000614496.4:ENST00000456246.1:ENST00000234420.11:ENST00000673922.1:ENST00000673637.1:ENST00000540021.6:ENST00000455383.5:ENST00000538136.1:ENST00000420813.5:ENST00000411819.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	52	2	2.03361	2.418805	2.804	0.0325854	0.00215855	0.145164	0.0417866
chr1	93182186	93182284	163184	0	+	0.346939	(0.32,0.35]	chr1	17644	24	UTR5	UTR5:EXON_MRNA:INTRON	CCDC18	ENSG00000122483.18	ENST00000343253.11:ENST00000528942.1:ENST00000401026.7:ENST00000690592.1:ENST00000448243.6:ENST00000370276.6:ENST00000690025.1:ENST00000479653.6:ENST00000481180.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	79	2	1.5565	2.418785	3.28107	0.0383034	0.00262488	0.141858	0.0470772
chr1	9804661	9804761	375253	0	-	0.43	(0.408,0.44]	chr1	43787	309	INTRON	INTRON	CLSTN1	ENSG00000171603.18	ENST00000377298.9:ENST00000650348.1:ENST00000361311.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	32	2	2.3975	2.41869	2.43988	0.040266	0.0398236	0.161534	0.143072
chr2	63959957	63960057	1139412	0	-	0.42	(0.408,0.44]	chr2	122003	104	INTRON	INTRON	VPS54	ENSG00000143952.20	ENST00000409558.8:ENST00000272322.9:ENST00000354504.7	protein_coding	protein_coding	protein_coding	protein_coding	2	32	2	2.3975	2.41869	2.43988	0.040266	0.0398236	0.161534	0.143072
chr6	7232777	7232876	2799626	0	+	0.434343	(0.408,0.44]	chr6	263786	2	INTRON	INTRON	RREB1	ENSG00000124782.21	ENST00000379933.7:ENST00000379938.7:ENST00000349384.10:ENST00000334984.10	protein_coding	protein_coding	protein_coding	protein_coding	2	32	2	2.3975	2.41869	2.43988	0.040266	0.0398236	0.161534	0.143072
chr7	156598665	156598765	3685320	0	-	0.42	(0.408,0.44]	chr7	341939	138	INTRON	INTRON	LINC01006	ENSG00000182648.14	ENST00000651649.1:ENST00000652322.1:ENST00000656672.1:ENST00000661405.1:ENST00000656928.1:ENST00000661595.1:ENST00000656505.1:ENST00000447933.7:ENST00000660473.1:ENST00000671433.1:ENST00000425712.1:ENST00000656837.1:ENST00000663891.1:ENST00000458645.5	lncRNA	lncRNA	lncRNA	lncRNA	2	32	2	2.3975	2.41869	2.43988	0.040266	0.0398236	0.161534	0.143072
chr7	128080660	128080759	3406715	0	+	0.494949	(0.476,0.515]	chr7	318204	56	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000486037.1:ENST00000470723.5:ENST00000470463.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	43	2	1.8388	2.41866	2.99852	0.0564473	0.0077575	0.184423	0.0757402
chr16	20692674	20692774	6316863	0	+	0.34	(0.32,0.35]	chr16	604566	106	INTRON	INTRON	ACSM3	ENSG00000005187.12	ENST00000568235.5:ENST00000501740.6:ENST00000561584.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	60	2	2.14793	2.41857	2.68921	0.0230336	0.0110079	0.118056	0.0927187
chr3	169774761	169774861	1556310	0	+	0.25	[0,0.28]	chr3	161156	2	SS5_PROX	SS5_PROX:INTRON	MYNN	ENSG00000085274.16	ENST00000349841.10:ENST00000602751.5:ENST00000356716.8:ENST00000544106.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	62	2	1.8986	2.4185499999999998	2.9385	0.0531512	0.0142776	0.179787	0.0963703
chr7	91944339	91944439	3351048	0	+	0.34	(0.32,0.35]	chr7	312180	28	INTRON	INTRON	AKAP9	ENSG00000127914.19	ENST00000680534.1:ENST00000680513.1:ENST00000680072.1:ENST00000679821.1:ENST00000679554.1:ENST00000356239.8:ENST00000679521.1:ENST00000680181.1:ENST00000681722.1:ENST00000680766.1:ENST00000679448.1:ENST00000681412.1:ENST00000680047.1:ENST00000679474.1:ENST00000680952.1:ENST00000679457.1:ENST00000679722.1:ENST00000680074.1:ENST00000493453.1:ENST00000394564.5:ENST00000674381.2:ENST00000359028.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	61	2	2.2643	2.4184650000000003	2.57263	0.0312297	0.00712852	0.13151	0.0756118
chr10	928129	928229	4542552	0	-	0.57	(0.515,0.57]	chr10	419310	33	INTRON	INTRON	LARP4B	ENSG00000107929.16	ENST00000316157.8:ENST00000690516.1:ENST00000476529.5:ENST00000406525.6:ENST00000481118.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	94	2	2.23927	2.41836	2.59745	0.00328621	6.62645e-4	0.0527031	0.0234815
chr17	68037895	68037995	6669362	0	+	0.44	(0.408,0.44]	chr17	650743	4	SS5_PROX	SS5_PROX:INTRON	KPNA2	ENSG00000182481.10	ENST00000676857.1:ENST00000676594.1:ENST00000677827.1:ENST00000676622.1:ENST00000678054.1:ENST00000583269.5:ENST00000678388.1:ENST00000677918.1:ENST00000676902.1:ENST00000677419.1:ENST00000679346.1:ENST00000677223.1:ENST00000677695.1:ENST00000679078.1:ENST00000330459.8:ENST00000584026.6:ENST00000537025.6:ENST00000677086.1:ENST00000579754.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	14	171	2	1.72023	2.4183500000000002	3.11647	0.00525189	5.78989e-5	0.0656295	0.0066571
chr7	56079039	56079139	3319339	0	+	0.5	(0.476,0.515]	chr7	308586	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SUMF2	ENSG00000129103.19	ENST00000395436.7:ENST00000651354.1:ENST00000651586.1:ENST00000652303.1:ENST00000275607.13:ENST00000650735.1:ENST00000395435.7:ENST00000342190.11:ENST00000452216.5:ENST00000436782.5:ENST00000437307.6:ENST00000434526.8:ENST00000413756.5:ENST00000423763.5:ENST00000438133.5:ENST00000447501.5:ENST00000451338.1:ENST00000531229.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	44	2	2.26789	2.418285	2.56868	0.0256676	0.0176567	0.133676	0.105233
chr9	34013325	34013422	4245491	0	-	0.494845	(0.476,0.515]	chr9	390480	13	INTRON	INTRON	UBAP2	ENSG00000137073.24	ENST00000379238.7:ENST00000683659.1:ENST00000682239.1:ENST00000683140.1:ENST00000682209.1:ENST00000681980.1:ENST00000360802.6:ENST00000683252.1:ENST00000684158.1:ENST00000682914.1:ENST00000683717.1:ENST00000379239.9:ENST00000683084.1:ENST00000684754.1:ENST00000629575.2:ENST00000684298.1:ENST00000412543.6:ENST00000480885.5:ENST00000459988.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	44	2	2.26789	2.418285	2.56868	0.0256676	0.0176567	0.133676	0.105233
chr1	21744777	21744876	396473	0	-	0.30303	(0.28,0.32]	chr1	47304	78	INTRON	INTRON	USP48	ENSG00000090686.16	ENST00000400301.5:ENST00000308271.14:ENST00000529637.5:ENST00000421625.6:ENST00000374730.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	40	2	2.38101	2.41823	2.45545	0.0456017	0.0438092	0.164236	0.14901
chr2	158543083	158543183	898006	0	+	0.29	(0.28,0.32]	chr2	99354	92	INTRON	INTRON	PKP4	ENSG00000144283.23	ENST00000389759.8:ENST00000426248.7:ENST00000389757.7:ENST00000457109.5:ENST00000452162.5:ENST00000411900.5:ENST00000421462.5:ENST00000462335.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	40	2	2.38101	2.41823	2.45545	0.0456017	0.0438092	0.164236	0.14901
chr17	37271749	37271846	6761680	0	-	0.505155	(0.476,0.515]	chr17	664894	5	INTRON	INTRON	ACACA	ENSG00000278540.5	ENST00000616317.5:ENST00000614428.4:ENST00000612895.4:ENST00000617649.4:ENST00000613146.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	60	2	2.06491	2.41821	2.77151	0.0304733	0.00288481	0.143385	0.0475859
chr6	49608009	49608106	3105163	0	-	0.28866000000000003	(0.28,0.32]	chr6	290636	4	INTRON	INTRON	RHAG	ENSG00000112077.18	ENST00000371175.10:ENST00000646272.1:ENST00000646939.1:ENST00000646963.1	protein_coding	protein_coding	protein_coding	protein_coding	7	121	2	2.01853	2.41821	2.81789	0.0131536	7.16126e-4	0.0938857	0.0244108
chr1	174020098	174020197	588023	0	-	0.353535	(0.35,0.378]	chr1	70766	40	INTRON	INTRON	RC3H1	ENSG00000135870.12	ENST00000367696.7	protein_coding	protein_coding	protein_coding	protein_coding	9	132	2	2.23128	2.41815	2.60502	0.00502483	3.28626e-4	0.0619721	0.0161279
chr1	22084657	22084756	42533	0	+	0.353535	(0.35,0.378]	chr1	5116	25	INTRON	INTRON	ENSG00000289694:CDC42	ENSG00000289694.1:ENSG00000070831.18	ENST00000695855.1:ENST00000695856.1:ENST00000344548.8:ENST00000400259.5:ENST00000667384.2:ENST00000411827.2:ENST00000695858.1:ENST00000695857.1:ENST00000315554.14:ENST00000695859.1:ENST00000498236.1:ENST00000656825.1:ENST00000651171.1:ENST00000652582.1:ENST00000695860.1:ENST00000695796.1:ENST00000695797.1:ENST00000662562.2:ENST00000695798.1:ENST00000695799.1:ENST00000695800.1:ENST00000695801.1:ENST00000695802.1:ENST00000695861.1:ENST00000695862.1:ENST00000695863.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	46	2	2.17079	2.41813	2.66547	0.0233639	0.0225978	0.124921	0.118323
chr1	186407755	186407854	277875	0	+	0.373737	(0.35,0.378]	chr1	32488	11	INTRON	INTRON	ODR4	ENSG00000157181.16	ENST00000367470.8:ENST00000287859.11:ENST00000419367.8:ENST00000478571.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	46	2	2.17079	2.41813	2.66547	0.0233639	0.0225978	0.124921	0.118323
chr6	147680640	147680739	2990802	0	+	0.353535	(0.35,0.378]	chr6	280163	41	INTRON	INTRON	ENSG00000227681	ENSG00000227681.5	ENST00000427015.1:ENST00000432506.5:ENST00000442094.5	lncRNA	lncRNA	lncRNA	lncRNA	3	46	2	2.17079	2.41813	2.66547	0.0233639	0.0225978	0.124921	0.118323
chr8	41787583	41787683	3938960	0	-	0.34	(0.32,0.35]	chr8	361123	291	INTRON	INTRON	ANK1	ENSG00000029534.21	ENST00000347528.8:ENST00000265709.13:ENST00000289734.13	protein_coding	protein_coding	protein_coding	protein_coding	5	69	2	1.46414	2.41812	3.3721	0.065059	0.00182912	0.179599	0.0396683
chr2	175091443	175091543	1271554	0	-	0.23	[0,0.28]	chr2	134392	103	INTRON	INTRON	ATF2	ENSG00000115966.18	ENST00000345739.9:ENST00000426833.7:ENST00000264110.7:ENST00000409437.5:ENST00000409635.5:ENST00000435004.6:ENST00000428760.5:ENST00000392544.5:ENST00000417080.5:ENST00000456655.5:ENST00000421438.5:ENST00000429579.5:ENST00000415955.5:ENST00000409499.5:ENST00000478905.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	103	2	1.62991	2.4181	3.20629	0.0671202	5.56536e-4	0.183051	0.0214853
chr3	154310774	154310864	1843398	0	-	0.044444	[0,0.28]	chr3	185456	6	INTRON	INTRON	DHX36	ENSG00000174953.14	ENST00000496811.6:ENST00000308361.10:ENST00000329463.9:ENST00000481941.5:ENST00000462464.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	45	2	2.33055	2.418025	2.5055	0.062338	0.0359431	0.175343	0.152322
chr7	64349945	64350045	3319804	0	+	0.38	(0.378,0.408]	chr7	308641	9	UTR3	UTR3:EXON_MRNA	ZNF736	ENSG00000234444.10	ENST00000423484.3	protein_coding	protein_coding	protein_coding	protein_coding	8	109	2	2.22007	2.417985	2.6159	0.0022373	0.00194844	0.0435144	0.0400465
chr7	32584743	32584842	3304147	0	+	0.585859	(0.57,1]	chr7	306851	8	UTR3	UTR3:EXON_MRNA:INTRON	AVL9	ENSG00000105778.20	ENST00000318709.9:ENST00000409301.5:ENST00000446718.1:ENST00000497020.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	50	2	2.39221	2.417885	2.44356	0.00352602	0.00109465	0.0546236	0.0304174
chr6	44247595	44247695	2872833	0	+	0.53	(0.515,0.57]	chr6	272576	4	SS5_PROX	SS5_PROX:INTRON	HSP90AB1	ENSG00000096384.20	ENST00000620073.4:ENST00000353801.7:ENST00000371646.10	protein_coding	protein_coding	protein_coding	protein_coding	17	202	2	2.28332	2.417815	2.55231	8.47265e-4	3.79557e-5	0.026445	0.0052558
chr12	22633365	22633464	5094824	0	+	0.414141	(0.408,0.44]	chr12	481224	73	INTRON	INTRON	ETNK1	ENSG00000139163.16	ENST00000671733.1:ENST00000335148.8:ENST00000672951.1:ENST00000266517.9:ENST00000538218.2:ENST00000673496.1:ENST00000673406.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	158	2	2.25536	2.41778	2.5802	7.46238e-4	5.11085e-4	0.0250238	0.020816
chr2	178509875	178509975	930844	0	+	0.54	(0.515,0.57]	chr2	102252	61	UTR3	UTR3:EXON_MRNA	PLEKHA3	ENSG00000116095.11	ENST00000234453.10	protein_coding	protein_coding	protein_coding	protein_coding	3	38	2	2.27238	2.41772	2.56306	0.0247751	0.0161808	0.131869	0.101453
chrX	3851836	3851936	7747102	0	-	0.55	(0.515,0.57]	chrX	793099	11	INTRON	INTRON	ENSG00000285756	ENSG00000285756.2	ENST00000648217.1:ENST00000650456.1:ENST00000657698.1	lncRNA	lncRNA	lncRNA	lncRNA	3	38	2	2.27238	2.41772	2.56306	0.0247751	0.0161808	0.131869	0.101453
chr5	34184546	34184645	2599930	0	-	0.545455	(0.515,0.57]	chr5	247053	13	INTRON	INTRON	GUSBP18	ENSG00000215158.9	ENST00000514048.5:ENST00000507274.1:ENST00000508395.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	30	317	2	2.2156	2.41758	2.61956	5.8788e-5	2.41008e-5	0.00629492	0.00403357
chr17	46214669	46214769	6785091	0	-	0.44	(0.408,0.44]	chr17	669254	209	INTRON	INTRON	KANSL1	ENSG00000120071.15	ENST00000574590.6:ENST00000572904.6:ENST00000575318.6:ENST00000648792.1:ENST00000639150.1:ENST00000639375.1:ENST00000638269.1:ENST00000639356.1:ENST00000574655.6:ENST00000639099.1:ENST00000638902.1:ENST00000576739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	43	2	1.74775	2.4175649999999997	3.08738	0.0735403	0.00478231	0.190238	0.0636201
chr5	54382848	54382948	2354451	0	+	0.41	(0.408,0.44]	chr5	227061	422	INTRON	INTRON	LINC01033	ENSG00000249069.8	ENST00000665899.1:ENST00000653566.1:ENST00000655801.1:ENST00000654906.1:ENST00000667636.1:ENST00000665869.1:ENST00000664079.1:ENST00000659703.1:ENST00000662351.1:ENST00000523194.7:ENST00000665795.1:ENST00000667992.1:ENST00000662022.1:ENST00000657771.1:ENST00000517934.1	lncRNA	lncRNA	lncRNA	lncRNA	3	43	2	1.74775	2.4175649999999997	3.08738	0.0735403	0.00478231	0.190238	0.0636201
chr8	111002753	111002852	4027223	0	-	0.252525	[0,0.28]	chr8	367844	3	EXON_LNCRNA	EXON_LNCRNA:INTRON	LINC01608	ENSG00000253877.6	ENST00000670392.1:ENST00000658597.1:ENST00000662310.1:ENST00000671489.1:ENST00000668858.1:ENST00000669698.1:ENST00000665803.1:ENST00000658028.1:ENST00000664704.1:ENST00000661954.1:ENST00000661561.1:ENST00000658081.1:ENST00000667145.1:ENST00000658119.1:ENST00000524283.5:ENST00000669893.1:ENST00000660015.1:ENST00000668956.1:ENST00000657323.1:ENST00000663408.1:ENST00000653924.1:ENST00000659834.1:ENST00000658508.1:ENST00000669744.1:ENST00000658733.1:ENST00000657532.1:ENST00000665011.1:ENST00000523557.2:ENST00000669997.1	lncRNA	lncRNA	lncRNA	lncRNA	3	61	2	2.28885	2.417545	2.54624	0.0388449	0.0181093	0.143072	0.114853
chr1	25901975	25902073	404581	0	-	0.326531	(0.32,0.35]	chr1	48552	4	EXON_LNCRNA	EXON_LNCRNA:SS3_PROX:INTRON	STMN1	ENSG00000117632.23	ENST00000426559.6:ENST00000455785.7:ENST00000399728.5:ENST00000465604.1:ENST00000357865.6:ENST00000374291.5:ENST00000485226.1:ENST00000446334.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	103	2	1.74637	2.417505	3.08864	0.0210156	6.64579e-4	0.112328	0.0233423
chr16	21463003	21463102	6460968	0	-	0.474747	(0.44,0.476]	chr16	623298	24	INTRON	INTRON	SMG1P3	ENSG00000180747.15	ENST00000520823.6:ENST00000522480.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	4	51	2	1.75627	2.417445	3.07862	0.0380723	0.0060153	0.157702	0.0674604
chr2	101873346	101873446	837843	0	+	0.42	(0.408,0.44]	chr2	94026	3	SS3_PROX	SS3_PROX:INTRON	MAP4K4	ENSG00000071054.17	ENST00000324219.9:ENST00000350878.9:ENST00000425019.6:ENST00000625522.3:ENST00000413150.6:ENST00000634702.1:ENST00000456652.5:ENST00000347699.8:ENST00000417294.5:ENST00000627726.3:ENST00000421882.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	43	2	1.94273	2.4173299999999998	2.89193	0.0456237	0.00950364	0.149888	0.0863579
chr7	97134587	97134687	3357127	0	+	0.44	(0.408,0.44]	chr7	313205	163	INTRON	INTRON	SDHAF3	ENSG00000196636.8	ENST00000432641.3:ENST00000489852.1:ENST00000360382.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	43	2	1.94273	2.4173299999999998	2.89193	0.0456237	0.00950364	0.149888	0.0863579
chr1	243254639	243254739	668715	0	-	0.61	(0.57,1]	chr1	79334	2	SS5_PROX	SS5_PROX:INTRON	CEP170	ENSG00000143702.16	ENST00000366544.5:ENST00000366543.5:ENST00000366542.6:ENST00000522522.5:ENST00000522995.1:ENST00000523581.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	23	2	2.17026	2.41732	2.66438	0.0220522	0.0171563	0.123836	0.104099
chr16	23886479	23886579	6324265	0	+	0.58	(0.57,1]	chr16	605697	173	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000645517.1:ENST00000498739.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	23	2	2.17026	2.41732	2.66438	0.0220522	0.0171563	0.123836	0.104099
chr20	63933353	63933452	7301351	0	+	0.59596	(0.57,1]	chr20	743167	19	UTR3	UTR3:EXON_MRNA	DNAJC5	ENSG00000101152.11	ENST00000360864.9:ENST00000470551.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	23	2	2.17026	2.41732	2.66438	0.0220522	0.0171563	0.123836	0.104099
chr2	121733667	121733763	1222468	0	-	0.302083	(0.28,0.32]	chr2	130092	11	INTRON	INTRON	NIFK	ENSG00000155438.12	ENST00000285814.9:ENST00000447132.5:ENST00000451734.1:ENST00000477693.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	54	2	1.91611	2.417215	2.91832	0.0539102	0.0102484	0.164153	0.089002
chr7	23406006	23406105	3503018	0	-	0.292929	(0.28,0.32]	chr7	326892	5	INTRON	INTRON	IGF2BP3	ENSG00000136231.14	ENST00000258729.8:ENST00000421467.6:ENST00000468263.5:ENST00000479504.5:ENST00000466809.6:ENST00000491719.5:ENST00000465058.5:ENST00000469723.5:ENST00000476938.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	54	2	1.91611	2.417215	2.91832	0.0539102	0.0102484	0.164153	0.089002
chr7	132944338	132944438	3644506	0	-	0.36	(0.35,0.378]	chr7	338848	570	INTRON	INTRON	CHCHD3	ENSG00000106554.13	ENST00000262570.10:ENST00000448878.6:ENST00000496427.5:ENST00000423635.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	125	2	2.12264	2.417195	2.71175	0.0023865	0.00138349	0.0450097	0.0338784
chr12	123188595	123188695	5443605	0	-	0.51	(0.476,0.515]	chr12	520806	70	INTRON	INTRON	MPHOSPH9	ENSG00000051825.15	ENST00000606320.6:ENST00000541076.6:ENST00000545556.6:ENST00000302373.8:ENST00000539024.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	58	2	1.58842	2.41719	3.24596	0.0406588	0.00322919	0.161534	0.0507087
chr19	2789621	2789721	6997483	0	+	0.58	(0.57,1]	chr19	693776	22	INTRON	INTRON	THOP1	ENSG00000172009.15	ENST00000307741.11:ENST00000585673.5:ENST00000585338.1:ENST00000586780.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	23	2	2.05026	2.4171750000000003	2.78409	0.0321326	0.0116033	0.145026	0.0889104
chr19	4977517	4977617	7003500	0	+	0.62	(0.57,1]	chr19	694800	79	INTRON	INTRON	KDM4B	ENSG00000127663.15	ENST00000159111.9:ENST00000611640.4:ENST00000588337.5:ENST00000381759.8	protein_coding	protein_coding	protein_coding	protein_coding	3	23	2	2.05026	2.4171750000000003	2.78409	0.0321326	0.0116033	0.145026	0.0889104
chr3	14403646	14403746	1369402	0	+	0.61	(0.57,1]	chr3	144308	4	INTRON	INTRON	SLC6A6	ENSG00000131389.18	ENST00000613060.4:ENST00000618278.4:ENST00000610642.4:ENST00000622810.4:ENST00000649500.1:ENST00000622186.5:ENST00000621751.4:ENST00000613930.4:ENST00000622176.4:ENST00000615188.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	23	2	2.05026	2.4171750000000003	2.78409	0.0321326	0.0116033	0.145026	0.0889104
chr1	160219260	160219358	571160	0	-	0.459184	(0.44,0.476]	chr1	69110	4	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	DCAF8	ENSG00000132716.19	ENST00000326837.6:ENST00000368073.7:ENST00000368074.6:ENST00000477163.1:ENST00000476033.5:ENST00000461888.5:ENST00000490368.5:ENST00000497354.1:ENST00000481831.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	97	2	2.16148	2.4171500000000004	2.67282	0.00433875	0.00182519	0.0579868	0.0396683
chr7	33054278	33054378	3516349	0	-	0.47	(0.44,0.476]	chr7	327910	83	INTRON	INTRON	NT5C3A	ENSG00000122643.23	ENST00000456458.5:ENST00000610140.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	79	2	1.96975	2.417135	2.86452	0.0123514	0.00159222	0.0914865	0.0367961
chr5	139308627	139308727	2499531	0	+	0.37	(0.35,0.378]	chr5	238920	3	SS5_PROX	SS5_PROX:INTRON	MATR3	ENSG00000280987.4:ENSG00000015479.20	ENST00000509990.5:ENST00000506147.5:ENST00000512107.5:ENST00000361059.7:ENST00000394800.6:ENST00000502929.5:ENST00000504203.5:ENST00000509644.5:ENST00000512876.5:ENST00000513678.5:ENST00000513121.1:ENST00000504045.5:ENST00000504311.5:ENST00000502499.5:ENST00000510056.5:ENST00000511249.5:ENST00000394805.8:ENST00000507860.1:ENST00000509918.5:ENST00000503811.5:ENST00000511978.5:ENST00000618441.5:ENST00000514528.5:ENST00000504643.5:ENST00000515833.2:ENST00000514402.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	17	194	2	1.87356	2.417065	2.96057	0.00145462	4.40907e-4	0.0349875	0.019354
chr10	73068345	73068445	4647556	0	-	0.32	(0.28,0.32]	chr10	427531	1	SS5_PROX	SS5_PROX:INTRON	P4HA1	ENSG00000122884.13	ENST00000394890.7:ENST00000307116.6:ENST00000373008.6:ENST00000440381.5:ENST00000263556.3	protein_coding	protein_coding	protein_coding	protein_coding	7	121	2	2.31129	2.41705	2.52281	0.00385251	0.00319044	0.0542786	0.0520345
chrX	111710026	111710121	7702309	0	+	0.526316	(0.515,0.57]	chrX	788233	6	INTRON	INTRON	ALG13	ENSG00000101901.12	ENST00000487141.5:ENST00000394780.8:ENST00000251943.8:ENST00000610588.4:ENST00000621367.4:ENST00000622997.3:ENST00000624161.3:ENST00000636363.1:ENST00000624881.3:ENST00000495283.5:ENST00000623144.3:ENST00000470971.5:ENST00000623148.3:ENST00000436609.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	14	152	2	1.67397	2.41704	3.16011	0.008093	6.26436e-6	0.0766625	0.00175994
chr1	50679007	50679107	449435	0	-	0.55	(0.515,0.57]	chr1	54229	231	INTRON	INTRON	FAF1	ENSG00000185104.21	ENST00000396153.7:ENST00000494400.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	37	2	1.7074	2.417015	3.12663	0.0779432	0.00374498	0.196685	0.0562234
chrX	136926078	136926178	7727630	0	+	0.53	(0.515,0.57]	chrX	790772	3	INTRON	INTRON	TM9SF5P	ENSG00000234062.9	ENST00000650669.2:ENST00000687469.1:ENST00000431464.6:ENST00000685550.1:ENST00000685929.1:ENST00000424306.5:ENST00000687978.1:ENST00000688713.1:ENST00000693626.1:ENST00000686432.1:ENST00000693698.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	3	37	2	1.7074	2.417015	3.12663	0.0779432	0.00374498	0.196685	0.0562234
chr17	67827932	67828032	6667725	0	+	0.48	(0.476,0.515]	chr17	650544	12	INTRON	INTRON	BPTF	ENSG00000171634.19	ENST00000306378.11:ENST00000544778.6:ENST00000321892.8:ENST00000342579.8:ENST00000644067.1:ENST00000424123.7	protein_coding	protein_coding	protein_coding	protein_coding	5	68	2	2.3346	2.417005	2.49941	0.00811651	0.00494807	0.0766625	0.0646039
chr18	9232947	9233047	6869903	0	+	0.49	(0.476,0.515]	chr18	680611	106	INTRON	INTRON	ANKRD12	ENSG00000101745.17	ENST00000262126.9:ENST00000540578.6:ENST00000400020.7:ENST00000546007.6:ENST00000359158.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	68	2	2.3346	2.417005	2.49941	0.00811651	0.00494807	0.0766625	0.0646039
chr16	84725688	84725788	6410160	0	+	0.44	(0.408,0.44]	chr16	615272	88	INTRON	INTRON	USP10	ENSG00000103194.16	ENST00000562743.5:ENST00000540269.6:ENST00000563892.5:ENST00000562092.1:ENST00000569511.5:ENST00000219473.12:ENST00000570191.5:ENST00000563048.5:ENST00000562283.5:ENST00000563386.5:ENST00000569038.5:ENST00000570053.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	85	2	2.26617	2.416965	2.56776	0.00649402	0.00227507	0.0734343	0.0426265
chr17	75788670	75788769	6676445	0	+	0.434343	(0.408,0.44]	chr17	651899	33	INTRON	INTRON	UNK	ENSG00000132478.10	ENST00000589666.6:ENST00000589790.1:ENST00000587501.1:ENST00000586527.1:ENST00000592629.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	121	2	2.31152	2.4169549999999997	2.52239	0.00139382	0.00126655	0.0341355	0.0325433
chr4	82372351	82372440	2177523	0	-	0.303371	(0.28,0.32]	chr4	214152	4	INTRON	INTRON	HNRNPD	ENSG00000138668.19	ENST00000313899.12:ENST00000353341.8:ENST00000352301.8:ENST00000513584.1:ENST00000509263.5:ENST00000507010.5:ENST00000515432.1:ENST00000503822.1:ENST00000509107.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	159	2	2.20536	2.41693	2.6285	0.00255625	0.00137274	0.0449775	0.0340241
chr2	151424939	151425038	893361	0	+	0.494949	(0.476,0.515]	chr2	98908	13	INTRON	INTRON	RIF1	ENSG00000080345.18	ENST00000453091.6:ENST00000428287.6:ENST00000444746.7:ENST00000243326.9:ENST00000414861.6:ENST00000430328.6	protein_coding	protein_coding	protein_coding	protein_coding	4	57	2	2.10874	2.416905	2.72507	0.0285608	0.0029369	0.12666	0.0496505
chr3	152311138	152311238	1535410	0	+	0.47	(0.44,0.476]	chr3	159996	88	INTRON	INTRON	MBNL1	ENSG00000152601.18	ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000495875.6:ENST00000324210.10:ENST00000493459.5:ENST00000459747.1:ENST00000460591.5:ENST00000545754.5:ENST00000357472.7:ENST00000324196.9:ENST00000498502.5:ENST00000463374.5:ENST00000485910.5:ENST00000465907.6:ENST00000492948.5:ENST00000485509.5:ENST00000464596.5	protein_coding	protein_coding	protein_coding	protein_coding	15	196	2	2.14407	2.416875	2.68968	0.00138081	5.61555e-5	0.0338417	0.00613846
chr11	114443258	114443355	4869002	0	+	0.371134	(0.35,0.378]	chr11	454399	15	INTRON	INTRON	ENSG00000255663:REXO2	ENSG00000255663.1:ENSG00000076043.11	ENST00000544347.1:ENST00000544010.5:ENST00000265881.10:ENST00000539754.5:ENST00000539275.5:ENST00000539333.5:ENST00000541703.5:ENST00000543131.5:ENST00000538198.5:ENST00000539119.5:ENST00000542186.1:ENST00000544827.5:ENST00000546316.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	46	2	2.10859	2.41678	2.72497	0.0272722	0.0198266	0.136494	0.109608
chr7	133035907	133035987	3645427	0	-	0.5125	(0.476,0.515]	chr7	338873	3	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO:INTRON	CHCHD3:ENSG00000283041	ENSG00000106554.13:ENSG00000283041.1	ENST00000262570.10:ENST00000448878.6:ENST00000496427.5:ENST00000423635.5:ENST00000481152.2:ENST00000634247.1:ENST00000457942.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:nonsense_mediated_decay:processed_transcript:processed_pseudogene	8	105	2	2.4132	2.416775	2.42035	0.00417094	8.0704e-4	0.0570595	0.0258804
chr3	180936228	180936327	1568845	0	+	0.343434	(0.32,0.35]	chr3	162382	6	INTRON	INTRON	FXR1	ENSG00000114416.18	ENST00000469882.5:ENST00000484790.5:ENST00000465551.5:ENST00000305586.11:ENST00000475315.5:ENST00000357559.9:ENST00000468861.5:ENST00000491062.5:ENST00000479176.5:ENST00000445140.6:ENST00000472339.5:ENST00000484958.5:ENST00000480918.5:ENST00000484042.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	70	2	2.0893	2.416725	2.74415	0.0198267	0.00738971	0.109608	0.0769106
chr2	175165934	175166033	1272319	0	-	0.444444	(0.44,0.476]	chr2	134482	144	INTRON	INTRON	ATF2	ENSG00000115966.18	ENST00000345739.9:ENST00000426833.7:ENST00000264110.7:ENST00000409635.5:ENST00000428760.5:ENST00000392544.5:ENST00000417080.5:ENST00000456655.5:ENST00000421438.5:ENST00000429579.5:ENST00000415955.5:ENST00000409499.5:ENST00000435231.6:ENST00000437522.5:ENST00000409833.5:ENST00000413123.5:ENST00000445349.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	95	2	1.86959	2.41663	2.96367	0.0176166	2.39417e-4	0.105146	0.0136403
chr22	39461839	39461938	7515544	0	+	0.434343	(0.408,0.44]	chr22	767911	39	INTRON	INTRON	MGAT3	ENSG00000128268.12	ENST00000341184.7	protein_coding	protein_coding	protein_coding	protein_coding	3	44	2	2.16746	2.416625	2.66579	0.024436	0.019342	0.12011	0.119831
chr4	159251887	159251987	2074997	0	+	0.55	(0.515,0.57]	chr4	205218	77	INTRON	INTRON	RAPGEF2	ENSG00000109756.10	ENST00000644474.1:ENST00000691494.1:ENST00000505478.5:ENST00000504604.5:ENST00000644902.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	37	2	2.08547	2.416595	2.74772	0.0289426	0.0142192	0.1274	0.103638
chrX	131718533	131718633	7891861	0	-	0.53	(0.515,0.57]	chrX	803396	64	INTRON	INTRON	FIRRE	ENSG00000213468.7	ENST00000649541.1:ENST00000662867.1:ENST00000663405.1:ENST00000665076.1:ENST00000637577.2:ENST00000654978.1:ENST00000647966.1:ENST00000649391.1:ENST00000648028.2:ENST00000427391.2	lncRNA	lncRNA	lncRNA	lncRNA	3	37	2	2.08547	2.416595	2.74772	0.0289426	0.0142192	0.1274	0.103638
chr1	114413206	114413305	526903	0	-	0.40404	(0.378,0.408]	chr1	62091	25	INTRON	INTRON	TRIM33	ENSG00000197323.12	ENST00000358465.7:ENST00000369543.6:ENST00000448034.5	protein_coding	protein_coding	protein_coding	protein_coding	5	61	2	1.93153	2.416575	2.90162	0.0127237	0.0113157	0.0986314	0.0886121
chr4	174291769	174291869	2082658	0	+	0.36	(0.35,0.378]	chr4	205805	58	INTRON	INTRON	CEP44	ENSG00000164118.13	ENST00000505124.5:ENST00000457424.6:ENST00000396791.7:ENST00000503780.6:ENST00000514712.5:ENST00000515299.5:ENST00000503053.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	126	2	1.62581	2.416545	3.20728	0.0228676	6.89387e-5	0.118056	0.00688351
chr15	27090000	27090100	5983343	0	+	0.35	(0.32,0.35]	chr15	569164	628	INTRON	INTRON	GABRG3	ENSG00000182256.13	ENST00000615808.5:ENST00000555083.5	protein_coding	protein_coding	protein_coding	protein_coding	5	80	2	2.33698	2.4165400000000004	2.4961	0.00967886	0.00536261	0.0828038	0.0663076
chr16	74579399	74579498	6525055	0	-	0.50505	(0.476,0.515]	chr16	631842	162	INTRON	INTRON	GLG1	ENSG00000090863.12	ENST00000205061.9:ENST00000422840.7:ENST00000447066.6:ENST00000562090.5:ENST00000567951.5:ENST00000627032.2:ENST00000565260.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	51	2	1.68092	2.41647	3.15202	0.0474026	0.00455841	0.169265	0.0595107
chr9	65707842	65707941	4132144	0	+	0.484848	(0.476,0.515]	chr9	376521	8	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	CBWD5	ENSG00000147996.17	ENST00000377392.9:ENST00000377389.5:ENST00000476161.5:ENST00000497250.5:ENST00000480229.5:ENST00000430059.6:ENST00000382405.8:ENST00000429800.6:ENST00000486221.5:ENST00000465474.5:ENST00000377395.8:ENST00000476797.5:ENST00000496364.6:ENST00000489273.1:ENST00000485088.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	51	2	1.68092	2.41647	3.15202	0.0474026	0.00455841	0.169265	0.0595107
chr1	25267539	25267639	402558	0	-	0.6	(0.57,1]	chr1	48385	4	SS5_PROX	SS5_PROX:INTRON	RSRP1	ENSG00000117616.18	ENST00000473314.6:ENST00000568701.1:ENST00000561867.1:ENST00000568996.1:ENST00000450820.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	49	2	2.22366	2.41641	2.60916	0.00344378	0.00119055	0.0539802	0.0315806
chrX	3826100	3826200	7746839	0	-	0.51	(0.476,0.515]	chrX	793077	1	SS5_PROX	SS5_PROX:INTRON	ENSG00000285756	ENSG00000285756.2	ENST00000648217.1:ENST00000425492.5:ENST00000662024.1:ENST00000490920.2:ENST00000475317.5:ENST00000483854.6:ENST00000653447.1:ENST00000669937.1:ENST00000671495.1:ENST00000486571.1	lncRNA	lncRNA	lncRNA	lncRNA	4	52	2	1.88582	2.41637	2.94692	0.0273268	0.00794331	0.123904	0.0797304
chr1	21164663	21164763	393508	0	-	0.48	(0.476,0.515]	chr1	46836	517	INTRON	INTRON	EIF4G3	ENSG00000075151.24	ENST00000374935.7:ENST00000602326.6:ENST00000685872.1:ENST00000686579.1:ENST00000688741.1:ENST00000400422.6:ENST00000634879.2:ENST00000693470.1:ENST00000685814.1:ENST00000356916.7:ENST00000682284.1:ENST00000438975.5:ENST00000411888.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	42	2	2.13304	2.416355	2.69967	0.024866	0.0195838	0.132101	0.109483
chr18	21612743	21612843	6879157	0	+	0.35	(0.32,0.35]	chr18	681835	3	SS5_PROX	SS5_PROX:INTRON	SNRPD1	ENSG00000167088.11	ENST00000300413.10:ENST00000579618.1:ENST00000582475.1	protein_coding	protein_coding	protein_coding	protein_coding	3	52	2	2.2664	2.41629	2.56618	0.0274185	0.0199969	0.136498	0.109608
chr3	129277511	129277598	1499436	0	+	0.413793	(0.408,0.44]	chr3	156655	2	UTR3	UTR3:EXON_MRNA	COPG1	ENSG00000181789.14	ENST00000314797.10:ENST00000515725.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	71	2	1.4609	2.4162600000000003	3.37162	0.0340889	0.00208674	0.146815	0.0411801
chr13	113586448	113586548	5549848	0	+	0.38	(0.378,0.408]	chr13	530371	2	INTRON	INTRON	TFDP1	ENSG00000198176.13	ENST00000475254.5:ENST00000465174.1:ENST00000375370.10:ENST00000544902.5:ENST00000408980.6:ENST00000453989.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	44	2	2.04292	2.4161900000000003	2.78946	0.0326035	0.0158859	0.145164	0.101453
chr3	60502111	60502211	1714635	0	-	0.4	(0.378,0.408]	chr3	176138	4214	INTRON	INTRON	FHIT	ENSG00000189283.10	ENST00000492590.6:ENST00000476844.5:ENST00000468189.5:ENST00000488467.5	protein_coding	protein_coding	protein_coding	protein_coding	3	44	2	2.04292	2.4161900000000003	2.78946	0.0326035	0.0158859	0.145164	0.101453
chr4	1706790	1706889	2095170	0	-	0.484848	(0.476,0.515]	chr4	207220	27	INTRON	INTRON	SLBP	ENSG00000163950.13	ENST00000489418.6:ENST00000429429.6:ENST00000318386.8:ENST00000483348.5:ENST00000488267.5:ENST00000480936.1	protein_coding	protein_coding	protein_coding	protein_coding	7	95	2	2.10798	2.416095	2.72421	0.00628634	0.00107964	0.0722266	0.0302522
chr12	111449864	111449962	5228040	0	+	0.377551	(0.35,0.378]	chr12	495525	17	UTR3	UTR3:EXON_MRNA	SH2B3	ENSG00000111252.11	ENST00000341259.7	protein_coding	protein_coding	protein_coding	protein_coding	30	431	2	2.38855	2.416075	2.4436	1.23306e-4	4.59232e-5	0.00999118	0.00552588
chr17	61776951	61777048	6808054	0	-	0.381443	(0.378,0.408]	chr17	672547	5	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	BRIP1	ENSG00000136492.10	ENST00000259008.7:ENST00000682755.1:ENST00000682453.1:ENST00000683039.1:ENST00000682989.1:ENST00000682589.1:ENST00000683235.1:ENST00000683535.1:ENST00000682477.1:ENST00000684584.1:ENST00000682073.1:ENST00000577598.5:ENST00000684471.1:ENST00000682433.1:ENST00000682066.1:ENST00000584322.2:ENST00000683381.1:ENST00000579028.2:ENST00000583837.5:ENST00000682611.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	91	2	2.09402	2.41588	2.73774	0.0126438	0.00113735	0.0982897	0.0307766
chr7	119779789	119779888	3629137	0	-	0.353535	(0.35,0.378]	chr7	337323	273	INTRON	INTRON	LINC02476	ENSG00000225546.6	ENST00000660268.1:ENST00000431071.5:ENST00000426413.2	lncRNA	lncRNA	lncRNA	lncRNA	21	291	2	2.30078	2.41584	2.5309	2.37532e-4	1.37994e-4	0.0141508	0.0101125
chr1	86922096	86922196	153667	0	+	0.29	(0.28,0.32]	chr1	16952	59	INTRON	INTRON	HS2ST1	ENSG00000153936.18	ENST00000370550.10:ENST00000370551.8:ENST00000687893.1:ENST00000693745.1:ENST00000689904.1:ENST00000690674.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	169	2	1.79593	2.41582	3.03571	0.0147274	8.74948e-5	0.0983813	0.00785215
chr10	92832249	92832347	4491450	0	+	0.418367	(0.408,0.44]	chr10	413692	5	INTRON	INTRON	EXOC6	ENSG00000138190.17	ENST00000671701.1:ENST00000672817.1	protein_coding	protein_coding	protein_coding	protein_coding	3	43	2	2.39162	2.41575	2.43988	0.0398236	0.0105837	0.143072	0.0911864
chr22	35402314	35402412	7508918	0	+	0.418367	(0.408,0.44]	chr22	766452	1	INTRON	INTRON	MCM5	ENSG00000100297.16	ENST00000451351.5:ENST00000382011.9:ENST00000216122.9:ENST00000417343.1:ENST00000416905.1:ENST00000444778.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	88	2	2.08376	2.4156750000000002	2.74759	0.0129886	0.00102152	0.0991656	0.029231300000000002
chr9	96916250	96916350	4298009	0	-	0.53	(0.515,0.57]	chr9	395221	128	INTRON	INTRON	MFSD14C	ENSG00000196312.15	ENST00000647176.1:ENST00000637409.1:ENST00000506067.1:ENST00000645073.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	4	49	2	2.39351	2.41567	2.43783	0.0100431	0.00916404	0.0881096	0.0812949
chr1	32660752	32660851	65926	0	+	0.373737	(0.35,0.378]	chr1	8422	28	INTRON	INTRON	RBBP4	ENSG00000162521.19	ENST00000414241.7:ENST00000527118.5:ENST00000373493.10:ENST00000401893.7:ENST00000524393.5:ENST00000492348.6:ENST00000526193.5:ENST00000373485.5:ENST00000477563.6:ENST00000458695.6:ENST00000445722.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	161	2	2.12887	2.415565	2.70226	0.00471873	1.0372e-4	0.0600445	0.00863417
chr19	5665211	5665307	7005739	0	+	0.46875	(0.44,0.476]	chr19	695032	9	EXON_MRNA	EXON_MRNA:INTRON	SAFB	ENSG00000160633.13	ENST00000589863.5:ENST00000588852.2:ENST00000292123.9:ENST00000592224.5:ENST00000454510.5:ENST00000591991.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	78	2	2.12136	2.41548	2.7096	0.00591413	0.00376205	0.0694038	0.0539118
chr15	52028173	52028273	6029112	0	+	0.54	(0.515,0.57]	chr15	574426	3	SS5_PROX	SS5_PROX:INTRON	MAPK6	ENSG00000069956.14	ENST00000560802.1:ENST00000691380.1:ENST00000558063.5:ENST00000560254.1:ENST00000681888.1:ENST00000261845.7:ENST00000680066.1:ENST00000680777.1:ENST00000558100.1:ENST00000680652.1:ENST00000558841.1:ENST00000558891.1:ENST00000560774.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	59	2	1.8661	2.415385	2.96467	0.0274846	8.94279e-4	0.123904	0.0273458
chrX	24725306	24725402	7632009	0	+	0.46875	(0.44,0.476]	chrX	781647	2	EXON_MRNA	EXON_MRNA:INTRON	POLA1	ENSG00000101868.13	ENST00000672178.1:ENST00000379068.8:ENST00000677890.1:ENST00000379059.7:ENST00000611764.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	57	2	2.13779	2.41538	2.69297	0.0264596	0.00333494	0.122506	0.0528877
chr1	246610885	246610985	350430	0	+	0.47	(0.44,0.476]	chr1	40502	29	INTRON	INTRON	CNST	ENSG00000162852.14	ENST00000483271.1:ENST00000366513.9:ENST00000366512.7:ENST00000366511.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	32	2	2.29425	2.415325	2.5364	0.0518406	0.0309324	0.176696	0.13151
chr11	77686158	77686258	4994616	0	-	0.45	(0.44,0.476]	chr11	471992	6	INTRON	INTRON	RSF1	ENSG00000048649.14	ENST00000308488.11:ENST00000480887.5:ENST00000531026.5:ENST00000526324.5	protein_coding	protein_coding	protein_coding	protein_coding	2	32	2	2.29425	2.415325	2.5364	0.0518406	0.0309324	0.176696	0.13151
chr13	110878937	110879037	5650271	0	-	0.46	(0.44,0.476]	chr13	538327	5	UTR3	UTR3:EXON_MRNA	ANKRD10	ENSG00000088448.14	ENST00000267339.6	protein_coding	protein_coding	protein_coding	protein_coding	2	32	2	2.29425	2.415325	2.5364	0.0518406	0.0309324	0.176696	0.13151
chr4	169620704	169620794	2079876	0	+	0.388889	(0.378,0.408]	chr4	205598	3	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	CLCN3	ENSG00000109572.15	ENST00000511092.5:ENST00000347613.8:ENST00000360642.7:ENST00000512813.5:ENST00000513761.6	protein_coding	protein_coding	protein_coding	protein_coding	9	125	2	2.18144	2.415325	2.64921	0.0035488	4.93004e-4	0.0529478	0.0200992
chr21	45096761	45096861	7418074	0	+	0.56	(0.515,0.57]	chr21	756262	216	INTRON	INTRON	ADARB1	ENSG00000197381.17	ENST00000462214.5:ENST00000460734.5:ENST00000348831.9:ENST00000389861.7:ENST00000389863.8:ENST00000492414.5:ENST00000496664.5:ENST00000437626.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	45	2	1.91916	2.41528	2.9114	0.0231902	0.00826019	0.118148	0.0813266
chr1	35627478	35627578	422175	0	-	0.53	(0.515,0.57]	chr1	50860	177	INTRON	INTRON	PSMB2	ENSG00000126067.12	ENST00000373237.4:ENST00000621781.4:ENST00000630477.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	50	2	1.62814	2.41527	3.2024	0.035203	0.00322022	0.150193	0.0507087
chr5	54020909	54021009	2618013	0	-	0.44	(0.408,0.44]	chr5	248835	1089	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	134	2	2.17484	2.415255	2.65567	0.003472	2.17278e-4	0.052042	0.0129235
chr20	47261289	47261388	7348546	0	-	0.494949	(0.476,0.515]	chr20	749282	115	INTRON	INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000467200.6:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000468376.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	90	2	2.06195	2.41525	2.76855	0.00539948	0.00244302	0.064414	0.0456956
chr4	82355873	82355968	2177348	0	-	0.368421	(0.35,0.378]	chr4	214124	6	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	HNRNPD	ENSG00000138668.19	ENST00000313899.12:ENST00000353341.8:ENST00000514325.1:ENST00000352301.8:ENST00000514671.5:ENST00000508119.5:ENST00000513584.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	84	2	1.57499	2.41524	3.25549	0.0185901	0.00363602	0.117264	0.0535085
chr7	149611203	149611303	3672488	0	-	0.51	(0.476,0.515]	chr7	340834	472	INTRON	INTRON	ZNF767P	ENSG00000133624.14	ENST00000463567.5:ENST00000472212.5:ENST00000684939.1:ENST00000690388.1:ENST00000486492.5:ENST00000481762.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	5	68	2	2.37448	2.41523	2.45598	0.00945755	0.00419067	0.0817766	0.0591344
chr19	12549862	12549962	7139942	0	-	0.46	(0.44,0.476]	chr19	720340	6	INTRON	INTRON	ZNF564	ENSG00000249709.8	ENST00000339282.12:ENST00000427105.1:ENST00000596193.1:ENST00000416136.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	58	2	1.70242	2.4152050000000003	3.12799	0.0282713	0.0050635	0.137721	0.0621733
chr16	23882091	23882190	6324221	0	+	0.59596	(0.57,1]	chr16	605697	129	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000645517.1:ENST00000498739.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	41	2	2.02689	2.4152	2.80351	0.00839052	0.00172505	0.0823837	0.0374701
chr14	70600415	70600515	5917447	0	-	0.42	(0.408,0.44]	chr14	562176	4	SS5_PROX	SS5_PROX:INTRON	MED6	ENSG00000133997.12	ENST00000554963.5:ENST00000615788.4:ENST00000256379.10:ENST00000430055.6:ENST00000440435.2:ENST00000553611.5:ENST00000556044.5:ENST00000556495.5:ENST00000554870.5:ENST00000556423.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	43	2	1.93243	2.41519	2.89795	0.0441194	0.0110735	0.162255	0.0873897
chr18	56613923	56614023	6979651	0	-	0.43	(0.408,0.44]	chr18	690523	1	SS5_PROX	SS5_PROX:INTRON	TXNL1	ENSG00000091164.13	ENST00000217515.11:ENST00000590954.5:ENST00000587807.5:ENST00000589931.1:ENST00000586262.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	71	2	1.49971	2.41519	3.33067	0.0298505	0.0024459	0.142135	0.0445752
chr7	105288534	105288634	3602898	0	-	0.41	(0.408,0.44]	chr7	336144	193	INTRON	INTRON	SRPK2	ENSG00000135250.17	ENST00000393651.8:ENST00000489828.5:ENST00000482897.5:ENST00000460391.5:ENST00000462282.5:ENST00000465112.5:ENST00000482862.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	43	2	1.93243	2.41519	2.89795	0.0441194	0.0110735	0.162255	0.0873897
chr2	27384287	27384382	1087043	0	-	0.442105	(0.44,0.476]	chr2	116450	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PPM1G	ENSG00000115241.11	ENST00000472077.1:ENST00000344034.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	57	2	2.38519	2.415165	2.44514	0.012193	0.0087381	0.0910127	0.0845538
chr18	9951952	9952052	6873732	0	+	0.38	(0.378,0.408]	chr18	680902	7	INTRON	INTRON	VAPA	ENSG00000101558.14	ENST00000400000.7:ENST00000340541.4:ENST00000584796.5:ENST00000583879.5:ENST00000583475.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	54	2	1.59317	2.415125	3.23708	0.0603812	0.00365053	0.19151	0.0535094
chr10	73007398	73007490	4646935	0	-	0.391304	(0.378,0.408]	chr10	427466	3	UTR3	UTR3:EXON_MRNA	P4HA1	ENSG00000122884.13	ENST00000394890.7:ENST00000307116.6:ENST00000373008.6:ENST00000440381.5:ENST00000263556.3	protein_coding	protein_coding	protein_coding	protein_coding	29	337	2	1.94062	2.415095	2.88957	4.16712e-4	3.78227e-5	0.0182804	0.00524425
chr1	44754945	44755045	92468	0	+	0.45	(0.44,0.476]	chr1	12289	1	SS5_PROX	SS5_PROX:INTRON	KIF2C	ENSG00000142945.13	ENST00000452259.5:ENST00000493027.5:ENST00000372224.9:ENST00000455186.5:ENST00000372217.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	132	2	2.10757	2.4150650000000002	2.72256	0.00118276	0.00111786	0.031662	0.0306954
chr14	105431605	105431704	5830760	0	+	0.464646	(0.44,0.476]	chr14	553564	112	INTRON	INTRON	TEX22:MTA1	ENSG00000226174.7:ENSG00000182979.18	ENST00000548638.5:ENST00000435036.6:ENST00000331320.12:ENST00000406191.5:ENST00000405646.5:ENST00000438610.5:ENST00000551236.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	45	2	2.33899	2.4150549999999997	2.49112	0.0315968	0.0142027	0.144381	0.0959987
chr16	3680290	3680388	6434095	0	-	0.377551	(0.35,0.378]	chr16	619345	1	INTRON	INTRON	TRAP1	ENSG00000126602.11	ENST00000246957.10:ENST00000538171.5:ENST00000576335.5:ENST00000571804.5:ENST00000574941.5:ENST00000576106.5:ENST00000571538.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	63	2	1.98929	2.41493	2.84057	0.0417909	0.00189462	0.147075	0.0402736
chr15	64372955	64373055	6205003	0	-	0.33	(0.32,0.35]	chr15	591788	4	SS5_PROX	SS5_PROX:INTRON	ENSG00000259316:PCLAF	ENSG00000259316.12:ENSG00000166803.14	ENST00000634251.1:ENST00000634847.3:ENST00000634318.1:ENST00000635160.1:ENST00000635704.1:ENST00000634529.1:ENST00000635511.1:ENST00000635605.1:ENST00000635593.1:ENST00000634259.2:ENST00000560278.2:ENST00000635413.1:ENST00000634538.1:ENST00000635320.1:ENST00000558783.2:ENST00000300035.9:ENST00000380258.6:ENST00000559519.5:ENST00000558008.3:ENST00000558043.5:ENST00000560234.1:ENST00000559280.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	92	2	1.98909	2.414925	2.84076	0.0108865	0.0027933	0.0923273	0.0469265
chr6	3260293	3260393	2789257	0	+	0.48	(0.476,0.515]	chr6	263445	7	INTRON	INTRON	PSMG4	ENSG00000180822.12	ENST00000509933.1:ENST00000380306.8:ENST00000380305.4:ENST00000438998.7:ENST00000419065.6:ENST00000473000.2:ENST00000324987.4:ENST00000451246.2:ENST00000454610.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	107	2	2.27098	2.41491	2.55884	0.00215979	0.00186081	0.0417866	0.039946
chr6	52406477	52406577	2875912	0	+	0.33	(0.32,0.35]	chr6	272910	23	UTR3	UTR3:EXON_MRNA:INTRON	EFHC1:PAQR8	ENSG00000096093.16:ENSG00000170915.9	ENST00000635984.1:ENST00000637849.1:ENST00000635760.1:ENST00000442253.3:ENST00000491749.2:ENST00000360726.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	50	2	1.88468	2.4148899999999998	2.9451	0.0515071	0.011051	0.176696	0.0873897
chr10	68609427	68609527	4441378	0	+	0.5	(0.476,0.515]	chr10	409530	80	INTRON	INTRON	TET1	ENSG00000138336.9	ENST00000373644.5	protein_coding	protein_coding	protein_coding	protein_coding	3	42	2	2.19809	2.414885	2.63168	0.0237106	0.020317	0.121522	0.118716
chr21	39281445	39281545	7465217	0	-	0.48	(0.476,0.515]	chr21	760548	8	INTRON	INTRON	BRWD1	ENSG00000185658.14	ENST00000333229.6:ENST00000342449.8:ENST00000380800.7	protein_coding	protein_coding	protein_coding	protein_coding	3	42	2	2.19809	2.414885	2.63168	0.0237106	0.020317	0.121522	0.118716
chr22	21667492	21667588	7482458	0	+	0.479167	(0.476,0.515]	chr22	763311	10	INTRON	INTRON	ENSG00000207751:PPIL2	ENSG00000207751.3:ENSG00000100023.20	ENST00000498589.1:ENST00000679795.1:ENST00000679540.1:ENST00000679580.1:ENST00000681286.1:ENST00000680061.1:ENST00000681338.1:ENST00000681956.1:ENST00000679827.1:ENST00000679534.1:ENST00000679479.1:ENST00000680393.1:ENST00000680463.1:ENST00000680426.1:ENST00000335025.12:ENST00000498109.2:ENST00000496819.2:ENST00000398831.8:ENST00000681394.1:ENST00000679477.1:ENST00000626352.2:ENST00000417788.5:ENST00000458567.5:ENST00000681791.1:ENST00000679692.1:ENST00000680962.1:ENST00000679857.1:ENST00000679586.1:ENST00000680094.1:ENST00000484439.5:ENST00000680434.1:ENST00000680109.1:ENST00000406385.1:ENST00000680022.1:ENST00000681137.1:ENST00000680860.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA:processed_transcript	4	51	2	1.63838	2.414785	3.19119	0.0555021	0.00325748	0.165463	0.0524329
chr6	20428923	20429023	2827718	0	+	0.47	(0.44,0.476]	chr6	265575	247	INTRON	INTRON	E2F3	ENSG00000112242.16	ENST00000346618.8:ENST00000535432.2	protein_coding	protein_coding	protein_coding	protein_coding	4	58	2	2.27304	2.414765	2.55649	0.0158915	0.00670547	0.109464	0.0707084
chr17	2603964	2604063	6547537	0	+	0.515152	(0.476,0.515]	chr17	635203	92	INTRON	INTRON	PAFAH1B1	ENSG00000007168.14	ENST00000576586.5:ENST00000397195.10:ENST00000676201.1:ENST00000575477.5:ENST00000675621.1:ENST00000676353.1:ENST00000674717.1:ENST00000675202.1:ENST00000675764.1:ENST00000674608.1:ENST00000676077.1:ENST00000676098.1:ENST00000572915.6:ENST00000570400.1:ENST00000571289.1:ENST00000675430.1:ENST00000675331.1:ENST00000676188.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	42	2	2.06491	2.414755	2.7646	0.0304733	0.0162075	0.143385	0.101453
chr6	35903283	35903382	3088647	0	-	0.50505	(0.476,0.515]	chr6	288891	77	INTRON	INTRON	SRPK1	ENSG00000096063.16	ENST00000373825.7:ENST00000423325.6:ENST00000346162.10:ENST00000361690.7:ENST00000510290.5:ENST00000508473.5:ENST00000512445.5:ENST00000513367.1:ENST00000507909.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	42	2	2.06491	2.414755	2.7646	0.0304733	0.0162075	0.143385	0.101453
chr10	27149540	27149639	4586243	0	-	0.454545	(0.44,0.476]	chr10	422781	1	INTRON	INTRON	YME1L1	ENSG00000136758.20	ENST00000376016.8:ENST00000613434.4:ENST00000326799.7:ENST00000491542.6:ENST00000427324.5:ENST00000396296.7:ENST00000477432.1	protein_coding	protein_coding	protein_coding	protein_coding	5	59	2	1.43625	2.414735	3.39322	0.063142	0.00187283	0.197183	0.0390476
chr12	123153545	123153629	5443236	0	-	0.47619	(0.44,0.476]	chr12	520742	3	INTRON	INTRON	MPHOSPH9	ENSG00000051825.15	ENST00000544217.1:ENST00000541603.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	156	2	2.31122	2.414725	2.51823	6.77243e-4	5.48676e-4	0.0238226	0.0213049
chr8	22090652	22090752	3711841	0	+	0.57	(0.515,0.57]	chr8	344560	4	INTRON	INTRON	FHIP2B	ENSG00000158863.22	ENST00000289921.8:ENST00000498344.2:ENST00000427751.5:ENST00000488968.1:ENST00000450006.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	37	2	2.39351	2.4147	2.43589	0.0370871	0.0100431	0.139194	0.0881096
chr15	55371092	55371192	6181526	0	-	0.42	(0.408,0.44]	chr15	589222	54	INTRON	INTRON	CCPG1	ENSG00000260916.8	ENST00000442196.8:ENST00000310958.10:ENST00000425574.7:ENST00000568808.5:ENST00000568372.5:ENST00000569205.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	95	2	1.94531	2.41461	2.88391	0.0136489	3.67575e-4	0.0949306	0.0172202
chr1	150578491	150578578	551077	0	-	0.586207	(0.57,1]	chr1	64766	1	EXON_MRNA	EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MCL1	ENSG00000143384.14	ENST00000678770.1:ENST00000678610.1:ENST00000464132.2:ENST00000620947.4:ENST00000369026.3:ENST00000676522.1:ENST00000307940.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	52	2	1.79898	2.414585	3.03019	0.0206524	1.05548e-4	0.122348	0.00920724
chr2	148646549	148646649	891770	0	+	0.31	(0.28,0.32]	chr2	98781	6	INTRON	INTRON	EPC2	ENSG00000135999.12	ENST00000457184.5:ENST00000258484.11:ENST00000409654.5:ENST00000397424.2	protein_coding	protein_coding	protein_coding	protein_coding	4	68	2	1.96802	2.414575	2.86113	0.0251578	0.0122675	0.12011	0.0969406
chr20	49082448	49082546	7284161	0	+	0.316327	(0.28,0.32]	chr20	740884	35	INTRON	INTRON	CSE1L	ENSG00000124207.17	ENST00000396192.7:ENST00000262982.3	protein_coding	protein_coding	protein_coding	protein_coding	4	68	2	1.96802	2.414575	2.86113	0.0251578	0.0122675	0.12011	0.0969406
chr22	40328527	40328626	7519716	0	+	0.343434	(0.32,0.35]	chr22	768233	54	UTR3	UTR3:EXON_MRNA	TNRC6B	ENSG00000100354.21	ENST00000301923.13:ENST00000454349.7:ENST00000335727.13	protein_coding	protein_coding	protein_coding	protein_coding	8	114	2	1.53721	2.41452	3.29183	0.0276712	4.15812e-4	0.137011	0.0188225
chr1	176018972	176019072	589814	0	-	0.49	(0.476,0.515]	chr1	70886	291	INTRON	INTRON	COP1	ENSG00000143207.21	ENST00000367669.8:ENST00000367667.5:ENST00000461830.6:ENST00000367666.5:ENST00000649803.1:ENST00000308769.12	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	54	2	2.09697	2.41451	2.73205	0.0159328	0.0136924	0.109464	0.0949306
chr18	791851	791950	6940501	0	-	0.515152	(0.476,0.515]	chr18	686525	35	INTRON	INTRON	YES1	ENSG00000176105.14	ENST00000584307.5:ENST00000314574.5:ENST00000577611.1:ENST00000581960.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	54	2	2.09697	2.41451	2.73205	0.0159328	0.0136924	0.109464	0.0949306
chr17	41777000	41777099	6769240	0	-	0.464646	(0.44,0.476]	chr17	666305	37	INTRON	INTRON	JUP	ENSG00000173801.17	ENST00000310706.9:ENST00000393930.5:ENST00000393931.8:ENST00000449889.5:ENST00000437187.5:ENST00000424457.5:ENST00000591690.5:ENST00000437369.5:ENST00000589036.1:ENST00000465293.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	63	2	2.29258	2.41449	2.5364	0.0309324	0.00279559	0.13151	0.0488779
chr9	91874461	91874561	4284507	0	-	0.36	(0.35,0.378]	chr9	393909	983	INTRON	INTRON	ROR2	ENSG00000169071.15	ENST00000375715.5:ENST00000375708.4:ENST00000550066.5:ENST00000495386.5:ENST00000546883.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	56	2	1.6122	2.414485	3.21677	0.0616849	0.00313804	0.174021	0.0514466
chr5	98919951	98920051	2683984	0	-	0.36	(0.35,0.378]	chr5	253957	145	INTRON	INTRON	CHD1	ENSG00000153922.11	ENST00000614616.5:ENST00000284049.7	protein_coding	protein_coding	protein_coding	protein_coding	12	134	2	1.7046	2.414475	3.12435	0.00606853	7.66038e-4	0.0703415	0.025385
chr4	38666354	38666453	1948607	0	+	0.333333	(0.32,0.35]	chr4	195070	15	INTRON	INTRON	KLF3	ENSG00000109787.13	ENST00000514033.1:ENST00000261438.10:ENST00000482150.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	49	2	2.19668	2.41439	2.6321	0.0268	0.021398	0.123719	0.123349
chr10	125070113	125070213	4713430	0	-	0.49	(0.476,0.515]	chr10	434897	306	INTRON	INTRON	CTBP2	ENSG00000175029.17	ENST00000337195.9:ENST00000411419.6:ENST00000494626.6:ENST00000531469.5:ENST00000460976.5:ENST00000476817.1:ENST00000530884.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	78	2	1.95469	2.414375	2.87406	0.0115753	0.00188729	0.0962115	0.0391691
chr11	43372275	43372374	4776679	0	+	0.434343	(0.408,0.44]	chr11	441686	15	INTRON	INTRON	TTC17	ENSG00000052841.15	ENST00000039989.9:ENST00000299240.10:ENST00000534347.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	66	2	1.82275	2.4143499999999998	3.00595	0.0123226	0.00781452	0.097243	0.0759016
chr11	70415462	70415562	4821790	0	+	0.58	(0.57,1]	chr11	449623	4	SS3_PROX	SS3_PROX:INTRON	CTTN	ENSG00000085733.16	ENST00000346329.7:ENST00000301843.13:ENST00000376561.7:ENST00000415461.2:ENST00000525276.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	28	2	2.1643	2.41434	2.66438	0.0171563	0.00941704	0.104099	0.0861183
chr6	53068603	53068701	2877581	0	+	0.326531	(0.32,0.35]	chr6	273115	2	INTRON	INTRON	FBXO9	ENSG00000112146.17	ENST00000459845.6:ENST00000498744.5:ENST00000370939.7:ENST00000323557.12:ENST00000473337.6	protein_coding	protein_coding	protein_coding	protein_coding	3	49	2	2.13945	2.41433	2.68921	0.0254517	0.0230336	0.133676	0.118056
chr7	97118197	97118297	3356963	0	+	0.33	(0.32,0.35]	chr7	313204	3	SS5_PROX	SS5_PROX:INTRON	SDHAF3	ENSG00000196636.8	ENST00000432641.3:ENST00000489852.1:ENST00000360382.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	49	2	2.13945	2.41433	2.68921	0.0254517	0.0230336	0.133676	0.118056
chr7	848615	848715	3268803	0	+	0.49	(0.476,0.515]	chr7	303585	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	SUN1	ENSG00000164828.18	ENST00000452783.6:ENST00000389574.7:ENST00000401592.6:ENST00000413171.6:ENST00000405266.5:ENST00000340926.7:ENST00000425407.6:ENST00000450881.5:ENST00000419312.5:ENST00000429178.5:ENST00000433212.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	14	184	2	2.37087	2.414245	2.45762	3.97212e-4	3.57816e-4	0.0178999	0.0175466
chr21	10451326	10451426	7368508	0	+	0.48	(0.476,0.515]	chr21	751977	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	BAGE2	ENSG00000187172.15	ENST00000474011.5:ENST00000470054.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	7	87	2	1.78749	2.41423	3.04097	0.0157618	7.0601e-4	0.101453	0.0241881
chr19	10770913	10771010	7014304	0	+	0.515464	(0.515,0.57]	chr19	696942	11	INTRON	INTRON	DNM2	ENSG00000079805.19	ENST00000683738.1:ENST00000682285.1:ENST00000682524.1:ENST00000355667.11:ENST00000389253.9:ENST00000585892.5:ENST00000359692.10:ENST00000408974.8:ENST00000586939.5:ENST00000591266.1:ENST00000587991.5:ENST00000591819.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	37	2	1.86007	2.414105	2.96814	0.0526611	0.00756432	0.178401	0.0749063
chr15	50352194	50352293	6171846	0	-	0.353535	(0.35,0.378]	chr15	588168	34	EXON_LNCRNA	EXON_LNCRNA:INTRON	GABPB1:GABPB1-IT1	ENSG00000104064.18:ENSG00000285410.1	ENST00000380877.8:ENST00000220429.12:ENST00000543881.5:ENST00000396464.7:ENST00000429662.6:ENST00000359031.8:ENST00000560825.5:ENST00000558970.2:ENST00000615671.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	9	112	2	1.63191	2.4140550000000003	3.1962	0.0149226	5.54078e-4	0.107378	0.0216641
chr1	227307104	227307204	651607	0	-	0.39	(0.378,0.408]	chr1	77110	420	INTRON	INTRON	CDC42BPA	ENSG00000143776.20	ENST00000366766.8:ENST00000366769.7:ENST00000334218.9:ENST00000366767.7:ENST00000366764.8:ENST00000478573.6:ENST00000682551.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	33	2	2.36428	2.414005	2.46373	0.0441088	0.0382831	0.162255	0.141795
chr14	105267029	105267129	5974013	0	-	0.4	(0.378,0.408]	chr14	568040	101	INTRON	INTRON	BRF1	ENSG00000185024.18	ENST00000547530.7:ENST00000379937.6:ENST00000619151.4:ENST00000327359.7:ENST00000440513.7:ENST00000546417.5:ENST00000550692.1:ENST00000548421.2	protein_coding	protein_coding	protein_coding	protein_coding	2	33	2	2.36428	2.414005	2.46373	0.0441088	0.0382831	0.162255	0.141795
chr15	58882447	58882543	6193587	0	-	0.4375	(0.408,0.44]	chr15	590010	20	INTRON	INTRON	SLTM	ENSG00000137776.17	ENST00000380516.7:ENST00000432750.5:ENST00000560494.1:ENST00000492526.5:ENST00000493062.5:ENST00000557924.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	44	2	2.27698	2.414005	2.55103	0.0583528	0.00587353	0.167723	0.0690758
chr17	29391623	29391722	6585647	0	+	0.393939	(0.378,0.408]	chr17	640373	2	INTRON	INTRON	ENSG00000266111:TAOK1	ENSG00000266111.2:ENSG00000160551.12	ENST00000584958.2:ENST00000261716.8:ENST00000583121.5:ENST00000587277.1:ENST00000536202.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	2	33	2	2.36428	2.414005	2.46373	0.0441088	0.0382831	0.162255	0.141795
chr2	127752641	127752740	1225289	0	-	0.40404	(0.378,0.408]	chr2	130486	142	INTRON	INTRON	WDR33	ENSG00000136709.12	ENST00000322313.9:ENST00000436787.5:ENST00000393006.5	protein_coding	protein_coding	protein_coding	protein_coding	2	33	2	2.36428	2.414005	2.46373	0.0441088	0.0382831	0.162255	0.141795
chr22	29283650	29283749	7496220	0	+	0.424242	(0.408,0.44]	chr22	764824	7	INTRON	INTRON	EWSR1	ENSG00000182944.18	ENST00000629659.2:ENST00000332050.10:ENST00000397938.7:ENST00000406548.5:ENST00000437155.6:ENST00000415761.5:ENST00000331029.11:ENST00000483415.5:ENST00000414183.6:ENST00000333395.10:ENST00000332035.10:ENST00000455726.5:ENST00000479135.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	44	2	2.27698	2.414005	2.55103	0.0583528	0.00587353	0.167723	0.0690758
chr7	26200142	26200227	3506235	0	-	0.705882	(0.57,1]	chr7	327193	1	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	HNRNPA2B1	ENSG00000122566.22	ENST00000679318.1:ENST00000677339.1:ENST00000678501.1:ENST00000676903.1:ENST00000608362.2:ENST00000677631.1:ENST00000676749.1:ENST00000677574.1:ENST00000679123.1:ENST00000677906.1:ENST00000476233.2:ENST00000677669.1:ENST00000677321.1:ENST00000678277.1:ENST00000677571.1:ENST00000679124.1:ENST00000676932.1:ENST00000678973.1:ENST00000678183.1:ENST00000679021.1:ENST00000678631.1:ENST00000678998.1:ENST00000490912.6:ENST00000354667.8:ENST00000618183.5:ENST00000677839.1:ENST00000677037.1:ENST00000678449.1:ENST00000679001.1:ENST00000678962.1:ENST00000676524.1:ENST00000678935.1:ENST00000678675.1:ENST00000676746.1:ENST00000356674.8:ENST00000678431.1:ENST00000678697.1:ENST00000678779.1:ENST00000676497.1:ENST00000677396.1:ENST00000360787.8:ENST00000679243.1:ENST00000677656.1:ENST00000463181.5:ENST00000678884.1:ENST00000495810.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	57	2	1.47472	2.4139999999999997	3.35328	0.0206205	8.52328e-5	0.122348	0.00825602
chr9	34187682	34187781	4111355	0	+	0.333333	(0.32,0.35]	chr9	374718	81	INTRON	INTRON	UBAP1	ENSG00000165006.14	ENST00000625521.2:ENST00000379186.8:ENST00000297661.9:ENST00000626262.2	protein_coding	protein_coding	protein_coding	protein_coding	6	92	2	1.83295	2.41395	2.99495	0.0224097	0.00102621	0.11692	0.0294094
chr9	120782413	120782512	4335354	0	-	0.414141	(0.408,0.44]	chr9	398253	35	INTRON	INTRON	FBXW2	ENSG00000119402.18	ENST00000684405.1:ENST00000684001.1:ENST00000684047.1:ENST00000608872.6:ENST00000453291.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	79	2	1.73753	2.41395	3.09037	0.0275537	5.47766e-4	0.123904	0.0212924
chr7	140801485	140801560	3662490	0	-	0.413333	(0.408,0.44]	chr7	340067	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	BRAF	ENSG00000157764.14	ENST00000496384.7:ENST00000644969.2:ENST00000644120.1:ENST00000642875.1:ENST00000646891.1:ENST00000644905.1:ENST00000642228.1:ENST00000288602.11:ENST00000646730.1:ENST00000497784.2:ENST00000642272.1:ENST00000643356.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	51	2	1.8749	2.41393	2.95296	0.0264246	0.00929354	0.133676	0.0817766
chr14	26880738	26880830	5663155	0	+	0.336957	(0.32,0.35]	chr14	540166	5	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	ENSG00000258081:MIR4307HG	ENSG00000258081.4:ENSG00000257612.2	ENST00000656336.1:ENST00000550024.1:ENST00000552303.1:ENST00000664825.1:ENST00000657233.1:ENST00000661570.1:ENST00000548170.2:ENST00000654842.1:ENST00000657558.1:ENST00000656237.1:ENST00000667739.1:ENST00000654874.1:ENST00000658815.1:ENST00000667676.1:ENST00000658149.1:ENST00000666037.1:ENST00000666377.1:ENST00000655440.1:ENST00000666571.1:ENST00000653927.1:ENST00000669484.1:ENST00000663099.1:ENST00000653481.1:ENST00000670889.1:ENST00000667699.1:ENST00000668735.1:ENST00000656692.1:ENST00000662028.1:ENST00000669068.1	lncRNA	lncRNA	lncRNA	lncRNA	4	69	2	2.19668	2.4139150000000003	2.63115	0.021398	0.00608073	0.123719	0.0676501
chr10	46800262	46800362	4430860	0	+	0.33	(0.32,0.35]	chr10	408543	1	SS3_PROX	SS3_PROX:INTRON	BMS1P1	ENSG00000204177.11	ENST00000580094.5:ENST00000690946.1:ENST00000688259.1:ENST00000685496.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	4	59	2	1.93031	2.41387	2.89743	0.0231421	0.0127608	0.126939	0.0926667
chr16	24195524	24195624	6327380	0	+	0.35	(0.32,0.35]	chr16	605800	39	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1	protein_coding	protein_coding	protein_coding	protein_coding	4	59	2	1.93031	2.41387	2.89743	0.0231421	0.0127608	0.126939	0.0926667
chr17	67191822	67191918	6825286	0	-	0.177083	[0,0.28]	chr17	674506	11	INTRON	INTRON	HELZ	ENSG00000198265.12	ENST00000358691.10:ENST00000579953.5:ENST00000580168.5:ENST00000417253.7:ENST00000580662.5	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:nonsense_mediated_decay:processed_transcript	5	87	2	2.0939	2.41387	2.73384	0.0246308	0.00875794	0.12011	0.0846118
chr22	21611736	21611832	7482145	0	+	0.333333	(0.32,0.35]	chr22	763244	3	INTRON	INTRON	UBE2L3	ENSG00000185651.16	ENST00000458578.6:ENST00000545681.2:ENST00000696046.1:ENST00000342192.9:ENST00000496722.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	59	2	1.93031	2.41387	2.89743	0.0231421	0.0127608	0.126939	0.0926667
chr4	70924334	70924434	1970725	0	+	0.43	(0.408,0.44]	chr4	197571	214	INTRON	INTRON	MOB1B	ENSG00000173542.9	ENST00000502869.5:ENST00000509041.5:ENST00000309395.7:ENST00000396051.2:ENST00000511449.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	69	2	2.36185	2.4138599999999997	2.46587	0.0133164	0.00280622	0.094512	0.0488779
chr7	105013269	105013368	3374608	0	+	0.464646	(0.44,0.476]	chr7	315850	127	INTRON	INTRON	KMT2E	ENSG00000005483.22	ENST00000622386.2	protein_coding	protein_coding	protein_coding	protein_coding	5	69	2	2.08211	2.413785	2.74546	0.0130715	0.00326603	0.0996047	0.0508595
chr10	49961570	49961670	4432827	0	+	0.45	(0.44,0.476]	chr10	408699	27	INTRON	INTRON	TIMM23B:TIMM23B-AGAP6	ENSG00000204152.14:ENSG00000178440.8	ENST00000478381.5:ENST00000651259.3:ENST00000651763.1:ENST00000651208.1:ENST00000652716.1:ENST00000483296.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	109	2	2.32451	2.4137399999999998	2.50297	0.00241361	0.00135188	0.0453973	0.0336321
chr5	28836040	28836140	2330110	0	+	0.35	(0.32,0.35]	chr5	225135	255	INTRON	INTRON	LINC02109	ENSG00000259786.7	ENST00000658190.1	lncRNA	lncRNA	lncRNA	lncRNA	8	111	2	1.90543	2.413735	2.92204	0.00676396	0.00202818	0.0741642	0.04086
chr7	150284352	150284452	3673258	0	-	0.53	(0.515,0.57]	chr7	340877	2	SS5_PROX	SS5_PROX:INTRON	ACTR3C	ENSG00000106526.11	ENST00000478393.5:ENST00000683684.1:ENST00000252071.8	protein_coding	protein_coding	protein_coding	protein_coding	9	102	2	2.28079	2.4136699999999998	2.54655	0.00145207	8.595e-4	0.0349828	0.0267428
chr9	130782053	130782153	4214545	0	+	0.45	(0.44,0.476]	chr9	386427	672	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000393293.4	protein_coding	protein_coding	protein_coding	protein_coding	8	108	2	2.41094	2.4136100000000003	2.41628	0.00205841	0.00156262	0.0409869	0.0365263
chr16	70404786	70404885	6511121	0	-	0.444444	(0.44,0.476]	chr16	630689	33	INTRON	INTRON	ST3GAL2	ENSG00000157350.13	ENST00000342907.3:ENST00000566097.1:ENST00000561708.1:ENST00000567586.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	78	2	2.04674	2.4135999999999997	2.78046	0.00803423	0.0028389	0.0803474	0.0473151
chr9	4728198	4728298	4228799	0	-	0.36	(0.35,0.378]	chr9	388786	52	INTRON	INTRON	AK3	ENSG00000147853.17	ENST00000381809.8:ENST00000611749.4:ENST00000359883.6:ENST00000447596.4	protein_coding	protein_coding	protein_coding	protein_coding	9	133	2	2.32479	2.41358	2.50237	0.00203892	0.00111137	0.04086	0.0305384
chr22	16647504	16647604	7473826	0	+	0.4	(0.378,0.408]	chr22	762019	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TPTEP1	ENSG00000100181.22	ENST00000558085.6:ENST00000400593.6:ENST00000426585.5:ENST00000383140.7	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	7	98	2	2.09688	2.413455	2.73003	0.00805155	8.35208e-4	0.0766625	0.0263691
chr6	18244507	18244603	3069044	0	-	0.479167	(0.476,0.515]	chr6	285187	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:INTRON	DEK	ENSG00000124795.17	ENST00000652689.1:ENST00000652292.1:ENST00000651624.1:ENST00000515770.2:ENST00000651992.1:ENST00000507591.2:ENST00000505224.5:ENST00000244776.11:ENST00000652576.1:ENST00000512145.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	69	2	2.26789	2.4133649999999998	2.55884	0.0176567	0.00186081	0.105233	0.039946
chr10	35348988	35349088	4424627	0	+	0.44	(0.408,0.44]	chr10	407899	114	INTRON	INTRON	CCNY	ENSG00000108100.18	ENST00000374706.5:ENST00000490012.6:ENST00000493157.6:ENST00000374704.8:ENST00000265375.13:ENST00000339497.7:ENST00000492478.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	59	2	1.92871	2.4133299999999998	2.89795	0.0127189	0.0110735	0.0986242	0.0873897
chr5	159192021	159192121	2759011	0	-	0.28	[0,0.28]	chr5	260356	96	INTRON	INTRON	RNF145	ENSG00000145860.12	ENST00000424310.7:ENST00000519865.5:ENST00000274542.6:ENST00000611185.4:ENST00000521606.6:ENST00000518802.5:ENST00000520638.1:ENST00000520548.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	94	2	1.70895	2.413325	3.1177	0.0229749	0.00849154	0.126178	0.0778788
chr2	131047974	131048074	1228630	0	-	0.35	(0.32,0.35]	chr2	130962	2	UTR3	UTR3:EXON_MRNA	FAM168B	ENSG00000152102.18	ENST00000389915.4:ENST00000409185.5	protein_coding	protein_coding	protein_coding	protein_coding	8	94	2	1.83527	2.41326	2.99125	0.00958447	0.00679363	0.0820838	0.0744247
chr16	69981750	69981849	6508848	0	-	0.474747	(0.44,0.476]	chr16	630244	31	INTRON	INTRON	PDXDC2P-NPIPB14P	ENSG00000196696.13	ENST00000531894.5:ENST00000530079.5	lncRNA	lncRNA	lncRNA	lncRNA	3	43	2	2.08277	2.413245	2.74372	0.0309998	0.0153007	0.13151	0.108569
chr18	26089357	26089457	6959730	0	-	0.44	(0.408,0.44]	chr18	688515	2	SS5_PROX	SS5_PROX:INTRON	SS18	ENSG00000141380.14	ENST00000415083.7:ENST00000542420.6:ENST00000579640.5:ENST00000269138.9:ENST00000269137.11:ENST00000585121.5:ENST00000539244.6:ENST00000585241.5:ENST00000578954.5:ENST00000579061.5:ENST00000577636.5:ENST00000584083.5:ENST00000578700.5:ENST00000582792.5:ENST00000581021.5:ENST00000577572.5:ENST00000582448.5:ENST00000581570.5:ENST00000577751.5:ENST00000580751.5:ENST00000580642.2:ENST00000578595.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	58	2	2.33431	2.413245	2.49218	0.0129219	0.00855168	0.0990564	0.0780217
chr7	75722764	75722864	3561089	0	-	0.37	(0.35,0.378]	chr7	331784	677	INTRON	INTRON	HIP1	ENSG00000127946.17	ENST00000336926.11:ENST00000434438.6:ENST00000485723.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	46	2	2.2877	2.4131299999999998	2.53856	0.0326077	0.0155765	0.133687	0.109411
chr7	17926806	17926905	3496430	0	-	0.50505	(0.476,0.515]	chr7	326520	191	INTRON	INTRON	SNX13	ENSG00000071189.21	ENST00000428135.7:ENST00000611725.4:ENST00000409076.6:ENST00000444712.5:ENST00000482558.5:ENST00000409604.1:ENST00000475800.5:ENST00000474067.5:ENST00000471744.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	58	2	1.53534	2.41304	3.29074	0.0476737	0.00272563	0.170116	0.0467523
chr21	42870164	42870264	7467816	0	-	0.46	(0.44,0.476]	chr21	760973	62	INTRON	INTRON	WDR4	ENSG00000160193.12	ENST00000330317.6:ENST00000476326.5:ENST00000398208.3:ENST00000492742.5:ENST00000479429.5:ENST00000463902.5:ENST00000470658.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	43	2	1.85146	2.412985	2.97451	0.0545846	0.00853825	0.182529	0.0780043
chr16	15125090	15125190	6450674	0	-	0.39	(0.378,0.408]	chr16	621602	17	INTRON	INTRON	ENSG00000270580	ENSG00000270580.5	ENST00000605794.5:ENST00000340301.5	lncRNA	lncRNA	lncRNA	lncRNA	6	68	2	1.82004	2.4128600000000002	3.00568	0.012605	0.00811866	0.0980801	0.0766625
chr8	80018228	80018328	3978852	0	-	0.43	(0.408,0.44]	chr8	364502	147	INTRON	INTRON	MRPS28	ENSG00000147586.10	ENST00000276585.9:ENST00000519386.5:ENST00000521434.5:ENST00000521605.1:ENST00000519120.1:ENST00000520946.1:ENST00000518271.1:ENST00000522987.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	88	2	1.73532	2.412845	3.09037	0.0194186	5.47766e-4	0.109149	0.0212924
chr16	1855382	1855479	6430184	0	-	0.43299	(0.408,0.44]	chr16	618372	8	INTRON	INTRON	MEIOB	ENSG00000162039.17	ENST00000325962.9:ENST00000470044.5:ENST00000397344.7:ENST00000496541.6	protein_coding	protein_coding	protein_coding	protein_coding	5	60	2	1.62122	2.412795	3.20437	0.0394247	0.00306596	0.143072	0.0509893
chr12	104482414	104482514	5210938	0	+	0.51	(0.476,0.515]	chr12	493315	245	INTRON	INTRON	CHST11	ENSG00000171310.11	ENST00000303694.6:ENST00000547956.1:ENST00000549260.5:ENST00000546689.1	protein_coding	protein_coding	protein_coding	protein_coding	4	51	2	1.52615	2.41277	3.29939	0.0739267	0.00211868	0.190914	0.0425644
chr11	34457181	34457275	4768843	0	+	0.361702	(0.35,0.378]	chr11	441250	2	SS5_PROX	SS5_PROX:INTRON	CAT	ENSG00000121691.7	ENST00000241052.5:ENST00000650153.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	62	2	2.28125	2.41273	2.54421	0.0182271	0.00630238	0.107842	0.0722266
chr1	40280412	40280512	81006	0	+	0.47	(0.44,0.476]	chr1	10508	1	SS5_PROX	SS5_PROX:INTRON	ZMPSTE24	ENSG00000084073.10	ENST00000675937.1:ENST00000674703.1:ENST00000372759.4:ENST00000675754.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	82	2	2.28847	2.412715	2.53696	0.00692113	0.00204135	0.0718189	0.041855
chr21	22257008	22257108	7384938	0	+	0.34	(0.32,0.35]	chr21	752727	438	INTRON	INTRON	ENSG00000226043	ENSG00000226043.2	ENST00000667099.1:ENST00000654607.1:ENST00000444130.1	lncRNA	lncRNA	lncRNA	lncRNA	5	80	2	2.38582	2.41269	2.43956	0.0138529	0.00352597	0.0953077	0.0546236
chr16	18808390	18808488	6456835	0	-	0.265306	[0,0.28]	chr16	622573	37	UTR3	UTR3:EXON_MRNA	SMG1	ENSG00000157106.18	ENST00000446231.7:ENST00000565324.5	protein_coding	protein_coding	protein_coding	protein_coding	2	45	2	2.38757	2.41259	2.43761	0.0552962	0.0423864	0.165463	0.161744
chr6	45309402	45309501	3103301	0	-	0.242424	[0,0.28]	chr6	290480	579	INTRON	INTRON	SUPT3H	ENSG00000196284.17	ENST00000475057.5:ENST00000371459.6:ENST00000371460.5:ENST00000459689.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	45	2	2.38757	2.41259	2.43761	0.0552962	0.0423864	0.165463	0.161744
chrX	114027069	114027169	7868311	0	-	0.21	[0,0.28]	chrX	801551	352	INTRON	INTRON	XACT	ENSG00000241743.4	ENST00000468762.3:ENST00000649506.1	lncRNA	lncRNA	lncRNA	lncRNA	2	45	2	2.38757	2.41259	2.43761	0.0552962	0.0423864	0.165463	0.161744
chr6	157940396	157940493	3016958	0	+	0.453608	(0.44,0.476]	chr6	281452	18	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	SNX9	ENSG00000130340.17	ENST00000680863.1:ENST00000679814.1:ENST00000680464.1:ENST00000681186.1:ENST00000679732.1:ENST00000681183.1:ENST00000681534.1:ENST00000681651.1:ENST00000680089.1:ENST00000680078.1:ENST00000680974.1:ENST00000681138.1:ENST00000392185.8:ENST00000679790.1:ENST00000680495.1:ENST00000679691.1:ENST00000681881.1:ENST00000681469.1:ENST00000680680.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	65	2	1.74644	2.41253	3.07862	0.0165016	0.0060153	0.110334	0.0674604
chr10	73030670	73030770	4647174	0	-	0.36	(0.35,0.378]	chr10	427499	3	SS3_PROX	SS3_PROX:INTRON	P4HA1	ENSG00000122884.13	ENST00000394890.7:ENST00000307116.6:ENST00000373008.6:ENST00000440381.5:ENST00000263556.3	protein_coding	protein_coding	protein_coding	protein_coding	5	75	2	2.32464	2.41247	2.5003	0.0159285	0.00256148	0.101453	0.0466761
chr8	102366920	102367020	4012298	0	-	0.32	(0.28,0.32]	chr8	367237	49	INTRON	INTRON	UBR5	ENSG00000104517.13	ENST00000520539.6:ENST00000220959.8:ENST00000521922.5	protein_coding	protein_coding	protein_coding	protein_coding	4	66	2	2.25298	2.412465	2.57195	0.0331711	0.00791652	0.133994	0.0797304
chr13	106558531	106558631	5648835	0	-	0.43	(0.408,0.44]	chr13	538150	15	EXON_MRNA	EXON_MRNA:INTRON	ARGLU1	ENSG00000134884.15	ENST00000400198.8:ENST00000472226.2:ENST00000375926.5:ENST00000360629.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	11	116	2	1.50282	2.412385	3.32195	0.0162433	2.54513e-4	0.109464	0.0147895
chr12	110289636	110289735	5226182	0	+	0.242424	[0,0.28]	chr12	495234	65	INTRON	INTRON	ATP2A2	ENSG00000174437.18	ENST00000552636.2:ENST00000308664.10:ENST00000539276.7:ENST00000377685.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	100	2	2.36941	2.4123599999999996	2.45531	0.0178556	0.00415834	0.106151	0.0590857
chr11	57714507	57714607	4792636	0	+	0.34	(0.32,0.35]	chr11	443656	13	INTRON	INTRON	ENSG00000288534:TMX2	ENSG00000288534.1:ENSG00000213593.10	ENST00000673781.1:ENST00000673810.1:ENST00000278422.9:ENST00000674116.1:ENST00000524972.5:ENST00000378312.8:ENST00000530114.5:ENST00000525035.5:ENST00000529403.1:ENST00000528110.5:ENST00000533602.5:ENST00000528042.1:ENST00000674060.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	59	2	1.97654	2.41233	2.84812	0.0199113	0.0147575	0.120668	0.0983813
chr17	30174091	30174191	6587974	0	+	0.33	(0.32,0.35]	chr17	640606	11	INTRON	INTRON	NSRP1	ENSG00000126653.18	ENST00000540900.7:ENST00000612959.4:ENST00000247026.10:ENST00000577289.6:ENST00000584154.5:ENST00000394826.8:ENST00000475652.5:ENST00000584317.5:ENST00000585881.5:ENST00000580103.6:ENST00000581048.5:ENST00000588614.1:ENST00000589608.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	37	2	2.31405	2.41233	2.51061	0.0517107	0.0364463	0.176696	0.138959
chrX	155577553	155577652	7918143	0	-	0.343434	(0.32,0.35]	chrX	806317	319	INTRON	INTRON	TMLHE	ENSG00000185973.12	ENST00000334398.8:ENST00000675642.1:ENST00000369439.4	protein_coding	protein_coding	protein_coding	protein_coding	2	37	2	2.31405	2.41233	2.51061	0.0517107	0.0364463	0.176696	0.138959
chr16	89391477	89391577	6542600	0	-	0.48	(0.476,0.515]	chr16	634240	180	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000647238.1:ENST00000644045.1:ENST00000643147.1:ENST00000644139.1:ENST00000568512.6:ENST00000566973.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	68	2	2.41121	2.412245	2.41328	0.0110342	0.00355364	0.0873897	0.0547657
chr11	3738019	3738119	4894566	0	-	0.34	(0.32,0.35]	chr11	458864	23	INTRON	INTRON	NUP98	ENSG00000110713.17	ENST00000359171.8:ENST00000324932.12:ENST00000650171.1:ENST00000355260.7:ENST00000397004.8:ENST00000397007.8:ENST00000527104.5:ENST00000529379.1:ENST00000397013.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	59	2	1.83315	2.4122	2.99125	0.0313348	0.00958447	0.144381	0.0820838
chr11	77793846	77793946	4995708	0	-	0.35	(0.32,0.35]	chr11	472047	288	INTRON	INTRON	RSF1	ENSG00000048649.14	ENST00000308488.11:ENST00000528095.5:ENST00000440064.2:ENST00000467567.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	49	2	2.25173	2.41218	2.57263	0.0312297	0.0180122	0.13151	0.114436
chr17	59629933	59630033	6641663	0	+	0.34	(0.32,0.35]	chr17	648527	94	INTRON	INTRON	CLTC	ENSG00000141367.12	ENST00000621829.4:ENST00000393043.5:ENST00000269122.8:ENST00000580081.1:ENST00000579456.5:ENST00000584313.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	49	2	2.25173	2.41218	2.57263	0.0312297	0.0180122	0.13151	0.114436
chr5	119123630	119123730	2460297	0	+	0.34	(0.32,0.35]	chr5	235637	21	INTRON	INTRON	DMXL1	ENSG00000172869.15	ENST00000539542.6:ENST00000503802.5:ENST00000311085.8:ENST00000514151.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	49	2	2.25173	2.41218	2.57263	0.0312297	0.0180122	0.13151	0.114436
chr17	50751116	50751206	6627310	0	+	0.311111	(0.28,0.32]	chr17	647264	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	LUC7L3	ENSG00000108848.16	ENST00000393227.6:ENST00000505658.6:ENST00000240304.5:ENST00000511974.5:ENST00000513969.5:ENST00000503728.1:ENST00000503798.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	30	483	2	2.34923	2.412175	2.47512	2.7569e-4	7.67887e-5	0.0152235	0.00735438
chr14	103342740	103342839	5825593	0	+	0.40404	(0.378,0.408]	chr14	552769	18	UTR3	UTR3:EXON_MRNA	EIF5	ENSG00000100664.11	ENST00000216554.8:ENST00000558506.1	protein_coding	protein_coding	protein_coding	protein_coding	6	67	2	1.50417	2.412165	3.32016	0.0384675	0.00268328	0.159169	0.0464781
chr7	50761460	50761558	3532360	0	-	0.408163	(0.378,0.408]	chr7	329519	51	INTRON	INTRON	GRB10	ENSG00000106070.20	ENST00000335866.7:ENST00000401949.6:ENST00000644769.1:ENST00000644879.1:ENST00000402497.6:ENST00000407526.6:ENST00000645075.2:ENST00000439044.7:ENST00000644716.1:ENST00000483819.1:ENST00000470992.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	69	2	1.92269	2.412155	2.90162	0.0113157	0.00836891	0.0886121	0.0822143
chr22	17898067	17898165	7549396	0	-	0.418367	(0.408,0.44]	chr22	771718	7	INTRON	INTRON	MICAL3	ENSG00000243156.9	ENST00000441493.7:ENST00000672019.1:ENST00000400561.6:ENST00000495076.5:ENST00000414725.6:ENST00000383094.7:ENST00000585038.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	69	2	2.08486	2.412135	2.73941	0.0145898	0.002744	0.0981689	0.0484022
chr12	112357187	112357286	5417502	0	-	0.383838	(0.378,0.408]	chr12	517670	371	INTRON	INTRON	HECTD4	ENSG00000173064.14	ENST00000550722.5:ENST00000377560.9:ENST00000682272.1:ENST00000550724.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	45	2	2.30961	2.412125	2.51464	0.055088	0.00684341	0.165463	0.0748032
chr7	5411782	5411882	3471963	0	-	0.38	(0.378,0.408]	chr7	324678	45	INTRON	INTRON	TNRC18	ENSG00000182095.15	ENST00000399537.8:ENST00000430969.6:ENST00000399434.2	protein_coding	protein_coding	protein_coding	protein_coding	3	45	2	2.30961	2.412125	2.51464	0.055088	0.00684341	0.165463	0.0748032
chr11	66656067	66656167	4811211	0	+	0.5	(0.476,0.515]	chr11	447918	38	INTRON	INTRON	RBM4	ENSG00000173933.21	ENST00000396053.9	protein_coding	protein_coding	protein_coding	protein_coding	3	47	2	2.28264	2.412105	2.54157	0.0534132	0.00697457	0.179876	0.0718189
chr3	23843886	23843986	1388109	0	+	0.32	(0.28,0.32]	chr3	145385	320	INTRON	INTRON	UBE2E1	ENSG00000170142.12	ENST00000306627.8:ENST00000346855.7:ENST00000495141.5:ENST00000442670.5:ENST00000424381.5:ENST00000467766.5:ENST00000475680.5:ENST00000452012.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	65	2	1.60343	2.4120850000000003	3.22074	0.0669889	0.00362783	0.183051	0.055479
chr20	35705630	35705730	7336166	0	-	0.49	(0.476,0.515]	chr20	747399	3	SS3_PROX	SS3_PROX:INTRON	RBM39	ENSG00000131051.24	ENST00000253363.11:ENST00000639702.1:ENST00000656873.1:ENST00000463004.5:ENST00000361162.10:ENST00000461283.5:ENST00000403542.6:ENST00000338163.10:ENST00000528062.7:ENST00000429968.5:ENST00000444878.5:ENST00000665058.1:ENST00000476806.5:ENST00000495293.5:ENST00000492779.5:ENST00000482563.1:ENST00000496183.5:ENST00000465158.5:ENST00000448303.5:ENST00000470563.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	103	2	1.98347	2.4120749999999997	2.84068	0.0030602	0.00217133	0.0509893	0.0417893
chr8	43057038	43057128	3745853	0	+	0.455556	(0.44,0.476]	chr8	348512	6	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	FNTA	ENSG00000168522.13	ENST00000533559.5:ENST00000526755.5:ENST00000302279.8:ENST00000527153.5:ENST00000533383.5:ENST00000533998.5:ENST00000524546.5:ENST00000531266.5:ENST00000533368.1:ENST00000525699.5:ENST00000529687.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	58	2	1.7965	2.4120049999999997	3.02751	0.0205549	0.00715968	0.122348	0.0723634
chr7	111316086	111316186	3621643	0	-	0.31	(0.28,0.32]	chr7	337093	3522	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	87	2	2.38504	2.41187	2.4387	0.0126802	0.00475871	0.0926667	0.0636201
chr18	23455793	23455893	6883546	0	+	0.54	(0.515,0.57]	chr18	682165	19	INTRON	INTRON	RIOK3	ENSG00000101782.15	ENST00000339486.8:ENST00000581585.5:ENST00000584960.1:ENST00000584052.5:ENST00000581302.5:ENST00000577501.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	44	2	1.63184	2.41181	3.19178	0.0545832	0.00289534	0.165292	0.0494641
chr18	36044738	36044837	6963317	0	-	0.363636	(0.35,0.378]	chr18	689076	35	INTRON	INTRON	RPRD1A	ENSG00000141425.18	ENST00000399022.9:ENST00000590898.5:ENST00000357384.8:ENST00000588737.5:ENST00000589050.1:ENST00000592674.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:nonsense_mediated_decay	4	56	2	1.6599	2.411805	3.16371	0.0545616	0.00383956	0.165292	0.0562562
chr3	5156928	5157028	1353922	0	+	0.32	(0.28,0.32]	chr3	142361	280	INTRON	INTRON	ARL8B	ENSG00000134108.14	ENST00000429403.5:ENST00000256496.8:ENST00000455168.5:ENST00000444332.1:ENST00000419534.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	56	2	2.18975	2.4117699999999997	2.63379	0.0776042	0.00503861	0.196285	0.0646039
chr3	9462918	9463017	1359588	0	+	0.252525	[0,0.28]	chr3	142803	85	INTRON	INTRON	SETD5	ENSG00000168137.20	ENST00000402198.7:ENST00000682536.1:ENST00000663774.1:ENST00000665872.1:ENST00000666307.1:ENST00000693430.1:ENST00000691925.1:ENST00000684606.1:ENST00000691175.1:ENST00000443339.5:ENST00000406341.5:ENST00000670063.1:ENST00000684055.1:ENST00000407969.5:ENST00000493918.5:ENST00000399686.6:ENST00000413704.5:ENST00000691988.1:ENST00000466242.5:ENST00000682236.1:ENST00000488236.5:ENST00000421188.1:ENST00000478961.6:ENST00000476740.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	171	2	2.4045	2.4117699999999997	2.41904	0.00723722	8.98228e-4	0.0729826	0.0274323
chr10	22601248	22601348	4579361	0	-	0.59	(0.57,1]	chr10	422005	91	INTRON	INTRON	PIP4K2A	ENSG00000150867.14	ENST00000376573.9:ENST00000545335.5:ENST00000422321.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	49	2	2.161	2.411745	2.66249	0.00462668	9.0016e-4	0.062717	0.0277303
chr8	37880212	37880311	3935752	0	-	0.414141	(0.408,0.44]	chr8	360576	22	INTRON	INTRON	RAB11FIP1	ENSG00000156675.16	ENST00000330843.9:ENST00000287263.8:ENST00000522727.5	protein_coding	protein_coding	protein_coding	protein_coding	4	53	2	2.30838	2.41165	2.51492	0.0329839	0.00547703	0.133816	0.0671198
chr3	143024848	143024948	1529326	0	+	0.22	[0,0.28]	chr3	159396	3	SS5_PROX	SS5_PROX:INTRON	U2SURP	ENSG00000163714.18	ENST00000488497.7:ENST00000473835.7:ENST00000493598.6:ENST00000463563.6:ENST00000488587.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	139	2	1.79678	2.411625	3.02647	0.0127186	0.00202496	0.0986242	0.04086
chr6	105277945	105278044	3173563	0	-	0.40404	(0.378,0.408]	chr6	296025	49	UTR3	UTR3:EXON_MRNA	PREP	ENSG00000085377.15	ENST00000652536.2:ENST00000369110.8	protein_coding	protein_coding	protein_coding	protein_coding	4	53	2	1.72045	2.411595	3.10274	0.0424671	0.00586642	0.161763	0.0668095
chr16	1371611	1371711	6427536	0	-	0.63	(0.57,1]	chr16	617814	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	UNKL	ENSG00000059145.19	ENST00000389221.9:ENST00000248104.11:ENST00000403703.5:ENST00000674376.1:ENST00000397464.5:ENST00000508903.7:ENST00000402641.6:ENST00000513783.1:ENST00000515195.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	23	2	1.9042	2.4115450000000003	2.91889	0.0476976	0.00719009	0.153019	0.0756118
chr2	119760291	119760384	855998	0	+	0.655914	(0.57,1]	chr2	96161	5	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	PTPN4	ENSG00000088179.9	ENST00000263708.7:ENST00000460162.1:ENST00000420482.5:ENST00000460289.5:ENST00000488279.6:ENST00000485247.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	23	2	1.9042	2.4115450000000003	2.91889	0.0476976	0.00719009	0.153019	0.0756118
chr6	3260891	3260991	2789263	0	+	0.6	(0.57,1]	chr6	263445	13	INTRON	INTRON	PSMG4	ENSG00000180822.12	ENST00000509933.1:ENST00000380306.8:ENST00000380305.4:ENST00000438998.7:ENST00000419065.6:ENST00000473000.2:ENST00000324987.4:ENST00000451246.2:ENST00000454610.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	23	2	1.9042	2.4115450000000003	2.91889	0.0476976	0.00719009	0.153019	0.0756118
chr21	44862327	44862426	7469010	0	-	0.494949	(0.476,0.515]	chr21	761242	5	INTRON	INTRON	PTTG1IP	ENSG00000183255.12	ENST00000397887.7:ENST00000445724.3:ENST00000330938.8:ENST00000474737.5:ENST00000494690.5:ENST00000480234.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	12	155	2	2.38865	2.4115	2.43435	9.94276e-4	3.58725e-4	0.0288906	0.0169207
chr6	36597282	36597375	2854444	0	+	0.580645	(0.57,1]	chr6	269777	2	SS5_PROX	SS5_PROX:INTRON	SRSF3	ENSG00000112081.17	ENST00000613941.4:ENST00000373715.11:ENST00000339436.11:ENST00000477442.6:ENST00000620941.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	51	2	2.24434	2.4115	2.57866	0.00677343	5.14593e-4	0.074225	0.0208667
chr22	21823739	21823839	7560947	0	-	0.35	(0.32,0.35]	chr22	773388	155	INTRON	INTRON	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	8	111	2	1.95458	2.41147	2.86836	0.00548359	0.00250845	0.0671431	0.0446195
chr17	82262908	82263007	6852722	0	-	0.575758	(0.57,1]	chr17	679151	70	INTRON	INTRON	CSNK1D	ENSG00000141551.15	ENST00000398519.9:ENST00000314028.11:ENST00000581241.5:ENST00000392334.6:ENST00000403276.7:ENST00000582844.5:ENST00000580446.1:ENST00000581660.5:ENST00000578194.5:ENST00000579316.5:ENST00000584472.5:ENST00000580061.5:ENST00000585026.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	23	2	2.02391	2.4114	2.79889	0.0339274	0.0110274	0.134508	0.0927187
chrX	153789200	153789300	7911412	0	-	0.58	(0.57,1]	chrX	805171	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	IDH3G	ENSG00000067829.20	ENST00000370092.7:ENST00000370093.5:ENST00000217901.10:ENST00000427365.6:ENST00000444450.5:ENST00000444338.1:ENST00000497043.5:ENST00000495356.5:ENST00000461215.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	23	2	2.02391	2.4114	2.79889	0.0339274	0.0110274	0.134508	0.0927187
chr5	95763920	95764020	2431575	0	+	0.44	(0.408,0.44]	chr5	233671	3	SS5_PROX	SS5_PROX:INTRON	RHOBTB3	ENSG00000164292.13	ENST00000379982.8	protein_coding	protein_coding	protein_coding	protein_coding	8	108	2	1.8937	2.411315	2.92893	0.00928733	4.29493e-4	0.0855292	0.0190249
chr14	101914477	101914572	5820060	0	+	0.378947	(0.378,0.408]	chr14	551946	4	UTR3	UTR3:EXON_MRNA:INTRON	PPP2R5C	ENSG00000078304.20	ENST00000694906.1:ENST00000422945.6:ENST00000328724.9:ENST00000350249.7:ENST00000334743.9:ENST00000555237.5:ENST00000557071.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	45	2	1.81685	2.411265	3.00568	0.0597868	0.00811866	0.189982	0.0766625
chr3	100315109	100315207	1466128	0	+	0.285714	(0.28,0.32]	chr3	153675	29	INTRON	INTRON	TBC1D23	ENSG00000036054.13	ENST00000394144.9:ENST00000344949.9:ENST00000486274.5:ENST00000475134.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	88	2	2.25939	2.41115	2.56291	0.021772	0.00227849	0.11491	0.0437013
chr1	25496069	25496168	48610	0	+	0.282828	(0.28,0.32]	chr1	5975	41	INTRON	INTRON	MACO1	ENSG00000204178.11	ENST00000399766.7:ENST00000374343.5:ENST00000647928.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	54	2	2.39347	2.4110750000000003	2.42868	0.0504457	0.0105331	0.156383	0.0908969
chr1	172550513	172550613	254860	0	+	0.3	(0.28,0.32]	chr1	30357	167	INTRON	INTRON	SUCO	ENSG00000094975.14	ENST00000367723.8:ENST00000608151.5:ENST00000616058.4:ENST00000263688.4:ENST00000610051.5:ENST00000608566.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	54	2	2.39347	2.4110750000000003	2.42868	0.0504457	0.0105331	0.156383	0.0908969
chr10	74432872	74432972	4458592	0	+	0.29	(0.28,0.32]	chr10	411580	339	INTRON	INTRON	ADK	ENSG00000156110.15	ENST00000672429.1:ENST00000539909.6:ENST00000286621.7:ENST00000673352.1:ENST00000673310.1:ENST00000672920.1:ENST00000672394.1:ENST00000372734.5:ENST00000673027.1:ENST00000541550.6:ENST00000672604.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	54	2	2.39347	2.4110750000000003	2.42868	0.0504457	0.0105331	0.156383	0.0908969
chr3	177144718	177144818	1871918	0	-	0.42	(0.408,0.44]	chr3	187422	86	INTRON	INTRON	TBL1XR1	ENSG00000177565.18	ENST00000457928.7:ENST00000430069.5:ENST00000673974.1:ENST00000352800.10:ENST00000422442.6:ENST00000428970.5:ENST00000424913.5:ENST00000437738.5:ENST00000431421.5:ENST00000635794.1:ENST00000630796.2:ENST00000450267.5:ENST00000630833.2:ENST00000431674.5:ENST00000422066.5:ENST00000443315.5:ENST00000627825.2:ENST00000427349.5:ENST00000413084.5:ENST00000637137.1:ENST00000491623.2:ENST00000637544.1:ENST00000636187.1:ENST00000636912.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	15	197	2	2.40476	2.410945	2.41713	5.13874e-4	2.01867e-4	0.0208667	0.0124395
chr12	98539759	98539858	5198869	0	+	0.30303	(0.28,0.32]	chr12	491821	18	INTRON	INTRON	TMPO	ENSG00000120802.14	ENST00000556029.6:ENST00000343315.9:ENST00000393053.6:ENST00000556678.1	protein_coding	protein_coding	protein_coding	protein_coding	6	100	2	2.00031	2.41091	2.82151	0.0110488	0.00341865	0.0928193	0.0517761
chr2	131078797	131078896	1228945	0	-	0.454545	(0.44,0.476]	chr2	130987	65	INTRON	INTRON	FAM168B	ENSG00000152102.18	ENST00000389915.4:ENST00000409185.5	protein_coding	protein_coding	protein_coding	protein_coding	8	104	2	2.22991	2.4108799999999997	2.59185	0.00208483	0.00200767	0.0424672	0.0408395
chr13	36339845	36339945	5574511	0	-	0.49	(0.476,0.515]	chr13	532779	31	INTRON	INTRON	SPART	ENSG00000133104.14	ENST00000438666.7:ENST00000355182.8:ENST00000451493.5:ENST00000650221.1:ENST00000494062.2:ENST00000495510.1:ENST00000494703.1:ENST00000476377.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	58	2	1.92984	2.410745	2.89165	0.0466474	0.00142068	0.151522	0.034662
chr2	176277403	176277503	925292	0	+	0.51	(0.476,0.515]	chr2	101669	66	INTRON	INTRON	MTX2	ENSG00000128654.14	ENST00000420864.5:ENST00000249442.11:ENST00000423461.6:ENST00000443241.5:ENST00000452865.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	58	2	1.92984	2.410745	2.89165	0.0466474	0.00142068	0.151522	0.034662
chr20	38423376	38423471	7342184	0	-	0.431579	(0.408,0.44]	chr20	748300	13	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	SNHG17	ENSG00000196756.14	ENST00000654008.2:ENST00000658076.1:ENST00000662982.2:ENST00000456953.7:ENST00000654183.2:ENST00000663540.2:ENST00000651115.2:ENST00000667835.1:ENST00000660885.2:ENST00000662213.1:ENST00000665233.2:ENST00000666268.2:ENST00000665735.1:ENST00000660558.2:ENST00000691280.1:ENST00000658488.2:ENST00000688336.1:ENST00000668054.2:ENST00000690441.1:ENST00000655520.2:ENST00000687490.1:ENST00000664626.1:ENST00000658051.1:ENST00000668042.1:ENST00000686971.1:ENST00000663187.1:ENST00000669114.1:ENST00000653343.1:ENST00000666225.1:ENST00000659186.1:ENST00000671309.1:ENST00000669405.1:ENST00000666806.1:ENST00000657665.1:ENST00000657868.1:ENST00000663534.1:ENST00000658141.1:ENST00000689917.1:ENST00000664073.2:ENST00000653697.1:ENST00000656320.1:ENST00000686814.1:ENST00000417578.7:ENST00000654853.1:ENST00000665440.1:ENST00000659102.1:ENST00000436764.7:ENST00000668482.2:ENST00000671249.1:ENST00000655692.1:ENST00000662568.1:ENST00000659255.1:ENST00000665693.1:ENST00000693250.1:ENST00000691368.1:ENST00000693227.1:ENST00000690361.1:ENST00000670051.1:ENST00000667912.1:ENST00000693665.1:ENST00000665181.1:ENST00000687532.1:ENST00000691386.1:ENST00000693684.1:ENST00000666331.1:ENST00000669480.1:ENST00000658905.1:ENST00000661252.1:ENST00000669137.1:ENST00000688133.1:ENST00000689414.1:ENST00000691314.1:ENST00000669033.1:ENST00000686145.1:ENST00000653938.1:ENST00000663784.1:ENST00000665003.1:ENST00000659400.1:ENST00000653753.1:ENST00000449469.5:ENST00000654389.1:ENST00000657429.1:ENST00000667412.1:ENST00000654092.1:ENST00000653277.1:ENST00000663955.1:ENST00000656023.1:ENST00000692262.1:ENST00000414142.5:ENST00000659753.1:ENST00000670958.1:ENST00000657216.2:ENST00000664636.1:ENST00000657843.1:ENST00000660189.1:ENST00000660064.1:ENST00000655198.1:ENST00000662572.1:ENST00000423536.6:ENST00000658455.1:ENST00000666419.1:ENST00000413755.5	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	6	81	2	2.1269	2.410735	2.69457	0.00691204	0.00331036	0.0718189	0.0527031
chr12	132096807	132096907	5250312	0	+	0.46	(0.44,0.476]	chr12	499298	49	INTRON	INTRON	EP400P1	ENSG00000185684.16	ENST00000407361.8:ENST00000446190.5:ENST00000690966.1:ENST00000689047.1:ENST00000454179.7:ENST00000689533.1:ENST00000688036.1:ENST00000688136.1:ENST00000488030.5:ENST00000389560.6:ENST00000689403.1:ENST00000443539.6:ENST00000392352.5:ENST00000539205.5:ENST00000332441.7	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	3	42	2	2.14573	2.4107250000000002	2.67572	0.0238593	0.0212064	0.129075	0.113017
chr8	94873827	94873902	3800655	0	+	0.453333	(0.44,0.476]	chr8	352458	2	SS5_PROX	SS5_PROX:INTRON	INTS8	ENSG00000164941.14	ENST00000523731.6:ENST00000524333.5:ENST00000343161.8:ENST00000523206.5:ENST00000520526.5:ENST00000519736.5:ENST00000521155.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	42	2	2.14573	2.4107250000000002	2.67572	0.0238593	0.0212064	0.129075	0.113017
chrX	19352099	19352195	7629272	0	+	0.520833	(0.515,0.57]	chrX	781175	3	INTRON	INTRON	PDHA1	ENSG00000131828.14	ENST00000540249.5:ENST00000696704.1:ENST00000696705.1:ENST00000422285.7:ENST00000423505.6:ENST00000355808.10:ENST00000379805.4:ENST00000417819.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	14	159	2	2.38176	2.41071	2.43966	4.87669e-4	1.93054e-4	0.0199693	0.0127226
chr7	157179047	157179147	3454346	0	+	0.39	(0.378,0.408]	chr7	322929	2	SS5_PROX	SS5_PROX:INTRON	UBE3C	ENSG00000009335.18	ENST00000611269.4:ENST00000348165.10:ENST00000389103.4	protein_coding	protein_coding	protein_coding	protein_coding	4	59	2	2.30628	2.41046	2.51464	0.0163339	0.00684341	0.101571	0.0748032
chr1	244844657	244844755	672886	0	-	0.571429	(0.57,1]	chr1	79586	42	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	HNRNPU	ENSG00000153187.20	ENST00000475997.6:ENST00000366527.4:ENST00000649899.1:ENST00000638230.1:ENST00000640657.1	protein_coding	retained_intron	protein_coding	retained_intron:nonsense_mediated_decay	8	50	2	1.56203	2.41043	3.25883	0.0238371	1.51392e-4	0.129075	0.0112689
chr3	158487384	158487484	1542065	0	+	0.37	(0.35,0.378]	chr3	160329	178	INTRON	INTRON	RSRC1	ENSG00000174891.14	ENST00000480820.5:ENST00000295930.7:ENST00000683733.1:ENST00000682221.1:ENST00000482822.3:ENST00000476899.6:ENST00000464171.5:ENST00000611884.5:ENST00000682164.1:ENST00000684604.1:ENST00000683899.1:ENST00000682500.1:ENST00000312179.10:ENST00000475278.6:ENST00000480119.5:ENST00000683137.1:ENST00000684353.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	47	2	2.32443	2.41043	2.49643	0.0544216	0.00752974	0.164972	0.0773151
chr7	152357190	152357290	3680505	0	-	0.52	(0.515,0.57]	chr7	341654	126	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000682301.1:ENST00000452749.2:ENST00000680867.1:ENST00000683800.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	67	2	1.94449	2.410375	2.87626	0.0122196	0.00136224	0.0910127	0.0339121
chr11	659134	659234	4889113	0	-	0.53	(0.515,0.57]	chr11	457703	3	SS5_PROX	SS5_PROX:INTRON	DEAF1	ENSG00000177030.19	ENST00000382409.4:ENST00000527170.5:ENST00000685854.1:ENST00000683307.1:ENST00000528864.6:ENST00000525626.6:ENST00000682936.1:ENST00000690068.1:ENST00000692634.1:ENST00000687329.1:ENST00000686001.1:ENST00000689835.1:ENST00000525904.5:ENST00000530813.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	44	2	1.69407	2.41035	3.12663	0.0459452	0.00374498	0.149888	0.0562234
chr8	116743379	116743479	4034108	0	-	0.54	(0.515,0.57]	chr8	368079	57	INTRON	INTRON	EIF3H	ENSG00000147677.12	ENST00000521861.6:ENST00000276682.8:ENST00000518949.5:ENST00000518995.5:ENST00000522800.5:ENST00000518034.5:ENST00000517974.1:ENST00000522453.1:ENST00000519046.5:ENST00000520813.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	44	2	1.69407	2.41035	3.12663	0.0459452	0.00374498	0.149888	0.0562234
chr14	102639608	102639708	5823003	0	+	0.5	(0.476,0.515]	chr14	552490	459	INTRON	INTRON	RCOR1	ENSG00000089902.10	ENST00000262241.7	protein_coding	protein_coding	protein_coding	protein_coding	3	42	2	2.26034	2.410335	2.56033	0.0287634	0.0166235	0.127066	0.110511
chr19	8485002	8485102	7011180	0	+	0.5	(0.476,0.515]	chr19	696206	14	INTRON	INTRON	HNRNPM	ENSG00000099783.12	ENST00000348943.7:ENST00000600092.5:ENST00000325495.9:ENST00000600806.5:ENST00000620401.4:ENST00000594907.5:ENST00000597270.1:ENST00000597081.1:ENST00000598603.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	42	2	2.26034	2.410335	2.56033	0.0287634	0.0166235	0.127066	0.110511
chr4	168993512	168993611	2294504	0	-	0.313131	(0.28,0.32]	chr4	222054	28	INTRON	INTRON	CBR4	ENSG00000145439.12	ENST00000510042.5:ENST00000509108.1:ENST00000306193.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	87	2	2.25298	2.4103149999999998	2.56765	0.00835086	0.00791652	0.0797304	0.0774402
chr1	211970596	211970695	631724	0	-	0.282828	(0.28,0.32]	chr1	74710	15	INTRON	INTRON	INTS7	ENSG00000143493.13	ENST00000469606.5:ENST00000366994.8:ENST00000366993.7:ENST00000366992.7:ENST00000440600.6:ENST00000475798.5:ENST00000461212.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	74	2	1.51776	2.410195	3.30263	0.0528371	0.0038504	0.178899	0.0542786
chr7	155780200	155780299	3453278	0	+	0.50505	(0.476,0.515]	chr7	322755	52	UTR3	UTR3:EXON_MRNA	RBM33	ENSG00000184863.11	ENST00000401878.8:ENST00000341148.7	protein_coding	protein_coding	protein_coding	protein_coding	13	166	2	2.07463	2.4101749999999997	2.74572	0.00142485	1.96887e-4	0.0347137	0.0128602
chr1	244694509	244694609	348127	0	+	0.48	(0.476,0.515]	chr1	40375	21	INTRON	INTRON	DESI2	ENSG00000121644.19	ENST00000263831.11:ENST00000302550.16	protein_coding	protein_coding	protein_coding	protein_coding	3	42	2	1.99341	2.41007	2.82673	0.037389	0.0134403	0.155878	0.0946278
chr12	110383558	110383657	5408989	0	-	0.494949	(0.476,0.515]	chr12	516433	2	INTRON	INTRON	ANAPC7	ENSG00000196510.14	ENST00000455511.9:ENST00000450008.3:ENST00000548234.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	42	2	1.99341	2.41007	2.82673	0.037389	0.0134403	0.155878	0.0946278
chr19	28455425	28455524	7165642	0	-	0.494949	(0.476,0.515]	chr19	724165	11	INTRON	INTRON	ENSG00000283403:ENSG00000267243	ENSG00000283403.1:ENSG00000267243.6	ENST00000592347.5:ENST00000593065.5:ENST00000592716.1	lncRNA	lncRNA	lncRNA	lncRNA	3	42	2	1.99341	2.41007	2.82673	0.037389	0.0134403	0.155878	0.0946278
chr2	32646558	32646657	733688	0	+	0.50505	(0.476,0.515]	chr2	84737	58	INTRON	INTRON	TTC27	ENSG00000018699.13	ENST00000317907.9:ENST00000647819.1:ENST00000454690.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	42	2	1.99341	2.41007	2.82673	0.037389	0.0134403	0.155878	0.0946278
chr9	77970131	77970231	4271331	0	-	0.51	(0.476,0.515]	chr9	392880	474	INTRON	INTRON	GNAQ	ENSG00000156052.11	ENST00000286548.9:ENST00000411677.1	protein_coding	protein_coding	protein_coding	protein_coding	3	42	2	1.99341	2.41007	2.82673	0.037389	0.0134403	0.155878	0.0946278
chr16	16500718	16500818	6310869	0	+	0.46	(0.44,0.476]	chr16	604098	7	INTRON	INTRON	ENSG00000260126	ENSG00000260126.2	ENST00000567465.2	lncRNA	lncRNA	lncRNA	lncRNA	5	70	2	2.32184	2.4100349999999997	2.49823	0.00718224	0.00609071	0.0756118	0.0676501
chr8	38274650	38274749	3936313	0	-	0.333333	(0.32,0.35]	chr8	360690	51	UTR3	UTR3:EXON_MRNA	NSD3	ENSG00000147548.17	ENST00000317025.13	protein_coding	protein_coding	protein_coding	protein_coding	6	75	2	1.54135	2.4099649999999997	3.27858	0.0353776	0.00368368	0.150752	0.0535094
chr10	125157934	125158034	4714317	0	-	0.34	(0.32,0.35]	chr10	434933	198	INTRON	INTRON	CTBP2	ENSG00000175029.17	ENST00000337195.9:ENST00000411419.6:ENST00000494626.6:ENST00000531469.5:ENST00000460976.5:ENST00000476817.1:ENST00000530884.1:ENST00000467395.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	69	2	1.53859	2.40983	3.28107	0.0534261	0.00262488	0.162935	0.0470772
chr16	84721801	84721901	6410121	0	+	0.52	(0.515,0.57]	chr16	615272	49	INTRON	INTRON	USP10	ENSG00000103194.16	ENST00000562743.5:ENST00000540269.6:ENST00000563892.5:ENST00000562092.1:ENST00000569511.5:ENST00000219473.12:ENST00000570191.5:ENST00000563048.5:ENST00000562283.5:ENST00000563386.5:ENST00000569038.5:ENST00000570053.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	78	2	2.13808	2.4097	2.68132	0.00333489	0.00324198	0.0524329	0.0512081
chr12	104322303	104322400	5210373	0	+	0.268041	[0,0.28]	chr12	493254	6	INTRON	INTRON	TXNRD1	ENSG00000198431.17	ENST00000525566.6:ENST00000503506.6:ENST00000526691.5:ENST00000526390.5:ENST00000529546.5:ENST00000529751.1:ENST00000524698.5:ENST00000527688.5:ENST00000526950.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	115	2	1.8592	2.409675	2.96015	0.0250628	0.00161799	0.12011	0.0369252
chr2	238450369	238450468	1052804	0	+	0.343434	(0.32,0.35]	chr2	112004	40	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	ASB1	ENSG00000065802.12	ENST00000264607.9:ENST00000481566.1:ENST00000473306.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	51	2	2.23182	2.409675	2.58753	0.068598	0.00560122	0.184298	0.0678837
chr6	7163174	7163273	2798919	0	+	0.383838	(0.378,0.408]	chr6	263733	220	INTRON	INTRON	RREB1	ENSG00000124782.21	ENST00000379933.7:ENST00000491191.5:ENST00000471433.5:ENST00000379938.7:ENST00000467782.5:ENST00000349384.10:ENST00000334984.10:ENST00000475946.5:ENST00000483150.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	67	2	1.45934	2.40966	3.35998	0.0442931	0.00230615	0.162302	0.0428247
chr20	47298428	47298528	7348925	0	-	0.36	(0.35,0.378]	chr20	749331	3	SS5_PROX	SS5_PROX:INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000467200.6:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000468376.2:ENST00000435836.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	47	2	1.82887	2.409655	2.99044	0.0584878	0.00894806	0.189395	0.0799922
chr3	177139933	177140033	1871870	0	-	0.41	(0.408,0.44]	chr3	187422	38	INTRON	INTRON	TBL1XR1	ENSG00000177565.18	ENST00000457928.7:ENST00000430069.5:ENST00000673974.1:ENST00000352800.10:ENST00000422442.6:ENST00000428970.5:ENST00000424913.5:ENST00000437738.5:ENST00000431421.5:ENST00000635794.1:ENST00000630796.2:ENST00000450267.5:ENST00000630833.2:ENST00000431674.5:ENST00000422066.5:ENST00000443315.5:ENST00000627825.2:ENST00000427349.5:ENST00000413084.5:ENST00000637137.1:ENST00000491623.2:ENST00000637544.1:ENST00000636187.1:ENST00000636912.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	57	2	2.21857	2.4095250000000004	2.60048	0.0209591	0.00484324	0.112046	0.0640618
chr19	28425175	28425275	7165394	0	-	0.36	(0.35,0.378]	chr19	724146	49	INTRON	INTRON	ENSG00000260725	ENSG00000260725.1	ENST00000567877.1	lncRNA	lncRNA	lncRNA	lncRNA	11	154	2	2.08349	2.4095199999999997	2.73555	0.00201332	5.41138e-4	0.0415004	0.0215026
chr13	24436272	24436371	5562454	0	-	0.40404	(0.378,0.408]	chr13	531519	4	INTRON	INTRON	PARP4	ENSG00000102699.6	ENST00000381989.4	protein_coding	protein_coding	protein_coding	protein_coding	3	44	2	2.35527	2.4095	2.46373	0.0382831	0.0121511	0.141795	0.0963966
chr2	8996062	8996162	1063493	0	-	0.43	(0.408,0.44]	chr2	113387	213	INTRON	INTRON	MBOAT2	ENSG00000143797.12	ENST00000305997.8:ENST00000486484.5:ENST00000477073.5:ENST00000462696.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	57	2	2.26792	2.409475	2.55103	0.0179973	0.00587353	0.106756	0.0690758
chr3	141971512	141971609	1833649	0	-	0.43299	(0.408,0.44]	chr3	184292	10	INTRON	INTRON	TFDP2	ENSG00000114126.18	ENST00000489671.6:ENST00000499676.5:ENST00000486111.5:ENST00000477292.5:ENST00000495310.5:ENST00000467072.5:ENST00000487734.5:ENST00000479040.5:ENST00000467667.5:ENST00000478006.5:ENST00000497579.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	57	2	2.26792	2.409475	2.55103	0.0179973	0.00587353	0.106756	0.0690758
chr10	69160407	69160507	4444917	0	+	0.5	(0.476,0.515]	chr10	410042	18	INTRON	INTRON	VPS26A	ENSG00000122958.15	ENST00000373382.5:ENST00000395098.5:ENST00000489656.5:ENST00000263559.11:ENST00000490696.5:ENST00000467852.1:ENST00000489794.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	45	2	2.13854	2.409385	2.68023	0.0776563	0.00353671	0.196285	0.0546236
chr5	88208179	88208279	2669128	0	-	0.57	(0.515,0.57]	chr5	252658	6	INTRON	INTRON	TMEM161B	ENSG00000164180.14	ENST00000514135.5:ENST00000296595.11:ENST00000511087.5:ENST00000510089.5:ENST00000506536.5:ENST00000511218.5:ENST00000512429.5:ENST00000507872.1:ENST00000509387.5:ENST00000503755.5:ENST00000513487.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	41	2	2.23241	2.409325	2.58624	0.0581268	0.00526399	0.188651	0.0633874
chr10	28556438	28556538	4414038	0	+	0.25	[0,0.28]	chr10	407148	180	INTRON	INTRON	WAC	ENSG00000095787.24	ENST00000680735.1:ENST00000375664.8:ENST00000428935.6:ENST00000651598.1:ENST00000628285.3:ENST00000681112.1:ENST00000679570.1:ENST00000375646.5:ENST00000354911.9:ENST00000347934.8:ENST00000420266.6:ENST00000651885.1:ENST00000651441.1:ENST00000679398.1:ENST00000424454.5:ENST00000442148.6:ENST00000448193.5:ENST00000414108.6:ENST00000679428.1:ENST00000439676.5:ENST00000345541.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	177	2	2.02496	2.409295	2.79363	0.00466792	0.0024744	0.0600108	0.0460748
chr17	51049160	51049259	6796298	0	-	0.474747	(0.44,0.476]	chr17	671012	13	INTRON	INTRON	SPAG9	ENSG00000008294.22	ENST00000262013.12:ENST00000505279.5:ENST00000357122.8:ENST00000514613.5:ENST00000505173.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	42	2	2.21079	2.409265	2.60774	0.0255874	0.0194581	0.120269	0.119831
chr7	139406287	139406383	3438063	0	+	0.458333	(0.44,0.476]	chr7	320359	1	INTRON	INTRON	LUC7L2:FMC1-LUC7L2	ENSG00000146963.18:ENSG00000269955.2	ENST00000541170.7:ENST00000541515.3:ENST00000619796.4:ENST00000354926.9:ENST00000456182.5:ENST00000263545.7:ENST00000463912.5:ENST00000498518.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	42	2	2.21079	2.409265	2.60774	0.0255874	0.0194581	0.120269	0.119831
chr9	125296652	125296749	4198606	0	+	0.443299	(0.44,0.476]	chr9	383160	7	INTRON	INTRON	GAPVD1	ENSG00000165219.23	ENST00000497580.5:ENST00000461379.5:ENST00000297933.11:ENST00000394084.5:ENST00000470056.5:ENST00000394105.6:ENST00000394083.6:ENST00000495955.5:ENST00000467750.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	42	2	2.21079	2.409265	2.60774	0.0255874	0.0194581	0.120269	0.119831
chr11	108049489	108049589	4856138	0	+	0.45	(0.44,0.476]	chr11	452883	2	SS3_PROX	SS3_PROX:INTRON	CUL5	ENSG00000166266.14	ENST00000393094.7:ENST00000532064.5:ENST00000531427.5:ENST00000532782.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	42	2	2.0776	2.409115	2.74063	0.0292951	0.0176095	0.141862	0.105143
chr13	28145584	28145684	5460899	0	+	0.4	(0.378,0.408]	chr13	523235	61	INTRON	INTRON	PAN3	ENSG00000152520.14	ENST00000503791.5:ENST00000380958.8:ENST00000399613.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	44	2	1.97143	2.40903	2.84663	0.0398704	0.0133954	0.161534	0.0946278
chr2	113237339	113237436	853065	0	+	0.391753	(0.378,0.408]	chr2	95730	17	EXON_LNCRNA	EXON_LNCRNA:INTRON	PAX8-AS1	ENSG00000189223.15	ENST00000662215.1:ENST00000456685.5:ENST00000556070.6:ENST00000623306.3:ENST00000451179.6:ENST00000653055.1:ENST00000437551.6:ENST00000665814.1:ENST00000669027.1:ENST00000617509.4:ENST00000616073.5:ENST00000422956.6:ENST00000661674.1:ENST00000617278.2:ENST00000662286.1:ENST00000654203.1:ENST00000663248.1:ENST00000333145.9:ENST00000665717.1:ENST00000624706.3:ENST00000553869.7:ENST00000445745.6:ENST00000436293.6:ENST00000661255.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	3	44	2	1.97143	2.40903	2.84663	0.0398704	0.0133954	0.161534	0.0946278
chr7	6037223	6037323	3476015	0	-	0.32	(0.28,0.32]	chr7	325181	4	SS5_PROX	SS5_PROX:INTRON	EIF2AK1	ENSG00000086232.13	ENST00000199389.11	protein_coding	protein_coding	protein_coding	protein_coding	14	196	2	1.76825	2.408995	3.04974	0.00464417	4.24213e-4	0.0629348	0.0189958
chr2	178514167	178514267	930887	0	+	0.34	(0.32,0.35]	chr2	102252	104	UTR3	UTR3:EXON_MRNA	PLEKHA3	ENSG00000116095.11	ENST00000234453.10	protein_coding	protein_coding	protein_coding	protein_coding	4	59	2	1.78201	2.40899	3.03597	0.0365003	0.00832487	0.153759	0.0774402
chr5	32171347	32171447	2597486	0	-	0.4	(0.378,0.408]	chr5	246744	271	INTRON	INTRON	GOLPH3	ENSG00000113384.14	ENST00000265070.7:ENST00000503610.5:ENST00000512668.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	90	2	1.92269	2.408935	2.89518	0.00836891	0.00190046	0.0822143	0.0393643
chr16	29450276	29450376	6470042	0	-	0.49	(0.476,0.515]	chr16	625070	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	ENSG00000288632:BOLA2-SMG1P6	ENSG00000288632.1:ENSG00000261740.7	ENST00000675579.1:ENST00000569622.6:ENST00000565417.6:ENST00000568556.2:ENST00000380596.10	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:nonsense_mediated_decay:lncRNA	5	69	2	2.28112	2.408915	2.53671	0.00700958	0.00624027	0.0718843	0.0718189
chr12	131731827	131731927	5249301	0	+	0.19	[0,0.28]	chr12	499173	30	INTRON	INTRON	SFSWAP	ENSG00000061936.10	ENST00000261674.9:ENST00000538548.5:ENST00000535236.5:ENST00000541286.5:ENST00000535202.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	253	2	2.37663	2.408755	2.44088	0.00156543	7.70576e-4	0.0360583	0.0255503
chr19	10660740	10660839	7013276	0	+	0.535354	(0.515,0.57]	chr19	696757	48	INTRON	INTRON	ILF3	ENSG00000129351.17	ENST00000449870.5:ENST00000587928.5:ENST00000407004.7:ENST00000589998.5:ENST00000589600.5:ENST00000589283.5:ENST00000590009.5:ENST00000593199.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	49	2	2.32836	2.40869	2.48902	0.0126662	0.00760558	0.0982897	0.0749571
chr2	159722237	159722337	899582	0	+	0.49	(0.476,0.515]	chr2	99520	61	INTRON	INTRON	MARCHF7	ENSG00000136536.15	ENST00000539065.5:ENST00000259050.8:ENST00000409175.6:ENST00000421037.1:ENST00000473749.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	93	2	2.37295	2.40868	2.44441	0.0036718	0.00193884	0.0535094	0.0409025
chr19	19424215	19424315	7035531	0	+	0.46	(0.44,0.476]	chr19	701433	178	INTRON	INTRON	GATAD2A	ENSG00000167491.18	ENST00000494516.6:ENST00000360315.7:ENST00000609040.5:ENST00000417582.6:ENST00000683918.1:ENST00000448576.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	68	2	2.22103	2.4086749999999997	2.59632	0.00776319	0.00579248	0.0787356	0.0662959
chr20	33665883	33665981	7328979	0	-	0.530612	(0.515,0.57]	chr20	746391	23	INTRON	INTRON	NECAB3	ENSG00000125967.17	ENST00000375238.8:ENST00000246190.11:ENST00000488489.5:ENST00000485399.5:ENST00000494174.5:ENST00000480994.5:ENST00000606690.5:ENST00000439478.5:ENST00000607805.5:ENST00000493590.1:ENST00000606106.1:ENST00000606699.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	59	2	2.24433	2.408655	2.57298	0.00725078	0.00506495	0.072984	0.0646039
chr21	32323899	32323990	7438086	0	-	0.516484	(0.515,0.57]	chr21	758761	10	INTRON	INTRON	URB1	ENSG00000142207.7	ENST00000382751.4	protein_coding	protein_coding	protein_coding	protein_coding	7	86	2	2.17039	2.408505	2.64662	0.00900252	5.1273e-4	0.0851009	0.0208667
chr1	36296082	36296182	73660	0	+	0.48	(0.476,0.515]	chr1	9419	1	SS3_PROX	SS3_PROX:INTRON	THRAP3	ENSG00000054118.15	ENST00000469141.6:ENST00000648638.1:ENST00000354618.10	protein_coding	protein_coding	protein_coding	protein_coding	6	64	2	1.57103	2.4084950000000003	3.24596	0.0307896	0.00322919	0.143385	0.0507087
chr17	44065389	44065485	6778383	0	-	0.395833	(0.378,0.408]	chr17	668129	11	INTRON	INTRON	LSM12	ENSG00000161654.10	ENST00000591247.6:ENST00000293406.8:ENST00000585388.2	protein_coding	protein_coding	protein_coding	protein_coding	3	44	2	1.8252	2.4084499999999998	2.9917	0.0619563	0.0068789	0.174514	0.0749442
chr7	117020511	117020607	3386661	0	+	0.385417	(0.378,0.408]	chr7	317141	3	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:PRIMIRNA:INTRON	ST7:ST7-OT4:MIR6132	ENSG00000004866.22:ENSG00000214188.9:ENSG00000283923.1	ENST00000393446.6:ENST00000265437.9:ENST00000393451.7:ENST00000438863.5:ENST00000393449.5:ENST00000443979.5:ENST00000323984.8:ENST00000417919.5:ENST00000446490.5:ENST00000471110.5:ENST00000422922.5:ENST00000432298.5:ENST00000449366.5:ENST00000622083.1:ENST00000487459.5:ENST00000393443.5:ENST00000467538.5:ENST00000434836.5:ENST00000465133.5:ENST00000477742.5:ENST00000462544.1:ENST00000393444.7:ENST00000393447.8	miRNA	protein_coding	miRNA:protein_coding:lncRNA	protein_coding:nonsense_mediated_decay:lncRNA:processed_transcript:primary_miRNA	3	44	2	1.8252	2.4084499999999998	2.9917	0.0619563	0.0068789	0.174514	0.0749442
chr14	73404052	73404152	5918760	0	-	0.48	(0.476,0.515]	chr14	562250	367	INTRON	INTRON	NUMB	ENSG00000133961.21	ENST00000554546.5:ENST00000555238.6:ENST00000557597.5:ENST00000356296.8:ENST00000555394.5:ENST00000555859.5:ENST00000554394.5:ENST00000555307.5:ENST00000554315.5:ENST00000555987.5:ENST00000556112.5:ENST00000557774.5:ENST00000554818.5:ENST00000557031.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	51	2	1.7425	2.40836	3.07422	0.0417334	0.00506023	0.147007	0.0646039
chr3	19951992	19952089	1376084	0	+	0.42268	(0.408,0.44]	chr3	145050	4	EXON_LNCRNA	EXON_LNCRNA:INTRON	RAB5A:ENSG00000289138	ENSG00000144566.11:ENSG00000289138.1	ENST00000273047.9:ENST00000412966.5:ENST00000446547.5:ENST00000422242.1:ENST00000469122.5:ENST00000686250.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA	10	133	2	2.23639	2.40828	2.58017	0.00445002	1.84532e-4	0.0592079	0.0118345
chr16	23887476	23887576	6324275	0	+	0.39	(0.378,0.408]	chr16	605697	183	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000645517.1:ENST00000498739.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	60	2	1.71374	2.40824	3.10274	0.0274158	0.00586642	0.136498	0.0668095
chr5	57178199	57178298	2358097	0	+	0.353535	(0.35,0.378]	chr5	227562	14	INTRON	INTRON	GPBP1	ENSG00000062194.16	ENST00000424459.7:ENST00000514387.6:ENST00000506184.7:ENST00000511209.5	protein_coding	protein_coding	protein_coding	protein_coding	6	85	2	2.18494	2.4082350000000003	2.63153	0.00562761	0.0047516	0.0653997	0.0635784
chr7	138539801	138539900	3435444	0	+	0.50505	(0.476,0.515]	chr7	319997	6	INTRON	INTRON	TRIM24	ENSG00000122779.18	ENST00000343526.9:ENST00000415680.6:ENST00000497516.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	51	2	2.11679	2.4082299999999996	2.69967	0.0195838	0.0115627	0.109483	0.0962115
chr12	79923802	79923902	5376422	0	-	0.5	(0.476,0.515]	chr12	512797	100	INTRON	INTRON	PPP1R12A	ENSG00000058272.19	ENST00000261207.9:ENST00000450142.7:ENST00000437004.6:ENST00000550107.5:ENST00000547330.5:ENST00000550510.5	protein_coding	protein_coding	protein_coding	protein_coding	3	43	2	2.16377	2.408225	2.65268	0.0243026	0.0201975	0.121243	0.12011
chr14	102792842	102792941	5824083	0	+	0.494949	(0.476,0.515]	chr14	552554	148	INTRON	INTRON	TRAF3	ENSG00000131323.16	ENST00000392745.8:ENST00000560371.5:ENST00000347662.8:ENST00000539721.5:ENST00000560463.5	protein_coding	protein_coding	protein_coding	protein_coding	3	43	2	2.16377	2.408225	2.65268	0.0243026	0.0201975	0.121243	0.12011
chr5	66070203	66070301	2372311	0	+	0.5	(0.476,0.515]	chr5	228611	8	INTRON	INTRON	ERBIN	ENSG00000112851.15	ENST00000380943.6:ENST00000416865.6:ENST00000380935.5:ENST00000284037.10:ENST00000380938.6:ENST00000511297.5:ENST00000506030.5:ENST00000508515.1:ENST00000511671.5:ENST00000503913.5:ENST00000512354.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	43	2	2.16377	2.408225	2.65268	0.0243026	0.0201975	0.121243	0.12011
chr13	23374063	23374155	5560082	0	-	0.304348	(0.28,0.32]	chr13	531359	5	INTRON	INTRON	SACS	ENSG00000151835.17	ENST00000683210.1:ENST00000684325.1:ENST00000682775.1:ENST00000684497.1:ENST00000402364.1:ENST00000682944.1:ENST00000382292.9:ENST00000455470.6:ENST00000423156.2:ENST00000683367.1:ENST00000683489.1:ENST00000684163.1:ENST00000684385.1:ENST00000683270.1:ENST00000683680.1:ENST00000683154.1:ENST00000684053.1:ENST00000682244.1:ENST00000682547.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	53	2	2.1895	2.4081799999999998	2.62686	0.0289217	0.0227063	0.1274	0.124921
chr3	170150709	170150809	1861519	0	-	0.31	(0.28,0.32]	chr3	186653	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	PHC3	ENSG00000173889.16	ENST00000495893.7:ENST00000494943.5:ENST00000467570.5:ENST00000484931.5:ENST00000479467.5:ENST00000466189.5:ENST00000475729.5:ENST00000474275.5:ENST00000472330.5:ENST00000465896.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	53	2	2.1895	2.4081799999999998	2.62686	0.0289217	0.0227063	0.1274	0.124921
chr17	1357322	1357421	6699172	0	-	0.515152	(0.476,0.515]	chr17	655527	26	INTRON	INTRON	YWHAE	ENSG00000108953.17	ENST00000264335.13:ENST00000466227.6:ENST00000571732.5:ENST00000573026.1:ENST00000496706.1:ENST00000573196.5:ENST00000575977.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	79	2	1.54629	2.408165	3.27004	0.0484352	2.20887e-4	0.153635	0.0130309
chr7	105263306	105263406	3602643	0	-	0.32	(0.28,0.32]	chr7	336137	564	INTRON	INTRON	SRPK2	ENSG00000135250.17	ENST00000393651.8:ENST00000357311.7:ENST00000489828.5:ENST00000482897.5:ENST00000460391.5:ENST00000462282.5:ENST00000465112.5:ENST00000482862.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	53	2	2.13651	2.40813	2.67975	0.0265696	0.0252505	0.134088	0.12011
chr3	141985671	141985771	1833795	0	-	0.29	(0.28,0.32]	chr3	184307	66	INTRON	INTRON	TFDP2	ENSG00000114126.18	ENST00000489671.6:ENST00000499676.5:ENST00000486111.5:ENST00000477292.5:ENST00000495310.5:ENST00000467072.5:ENST00000487734.5:ENST00000479040.5:ENST00000467667.5:ENST00000478006.5:ENST00000497579.5:ENST00000492919.1:ENST00000464782.5:ENST00000488107.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	55	2	2.2609	2.408055	2.55521	0.0671429	0.0067419	0.183051	0.0739405
chr5	178210893	178210983	2559474	0	+	0.488889	(0.476,0.515]	chr5	244660	4	UTR3	UTR3:EXON_MRNA	HNRNPAB	ENSG00000197451.12	ENST00000358344.8:ENST00000506339.5:ENST00000355836.9:ENST00000514633.5:ENST00000515193.5:ENST00000506259.5:ENST00000504898.5	protein_coding	protein_coding	protein_coding	protein_coding	14	162	2	1.12692	2.408035	3.68915	0.0520486	5.37117e-6	0.176923	0.00172277
chr15	101969733	101969832	6117552	0	+	0.616162	(0.57,1]	chr15	582296	31	INTRON	INTRON	WASH3P	ENSG00000185596.16	ENST00000558686.5:ENST00000354296.9:ENST00000559163.6:ENST00000557932.5:ENST00000558784.5:ENST00000560956.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	6	45	2	2.28103	2.408025	2.53502	0.0151554	6.60462e-4	0.108535	0.023462
chr1	61232828	61232928	128901	0	+	0.36	(0.35,0.378]	chr1	14782	289	INTRON	INTRON	NFIA	ENSG00000162599.17	ENST00000371191.5:ENST00000664495.1:ENST00000476646.5:ENST00000407417.7:ENST00000479364.1:ENST00000371189.8:ENST00000670151.1:ENST00000664149.1:ENST00000662015.1:ENST00000403491.8:ENST00000371187.7:ENST00000485903.6:ENST00000371185.6:ENST00000371184.6:ENST00000663597.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	34	2	2.24535	2.40792	2.57049	0.0647516	0.0262669	0.179192	0.133676
chr7	77636149	77636249	3343024	0	+	0.36	(0.35,0.378]	chr7	311409	3	SS5_PROX	SS5_PROX:INTRON	PTPN12	ENSG00000127947.16	ENST00000248594.11:ENST00000415482.6:ENST00000435495.6:ENST00000407343.3	protein_coding	protein_coding	protein_coding	protein_coding	2	34	2	2.24535	2.40792	2.57049	0.0647516	0.0262669	0.179192	0.133676
chr7	99366012	99366095	3361489	0	+	0.361446	(0.35,0.378]	chr7	313845	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ARPC1A	ENSG00000241685.10	ENST00000262942.10:ENST00000432786.5:ENST00000463009.1:ENST00000477240.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	34	2	2.24535	2.40792	2.57049	0.0647516	0.0262669	0.179192	0.133676
chr2	159732368	159732467	899685	0	+	0.343434	(0.32,0.35]	chr2	99528	28	INTRON	INTRON	MARCHF7	ENSG00000136536.15	ENST00000539065.5:ENST00000259050.8:ENST00000409175.6:ENST00000421037.1:ENST00000473749.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	124	2	2.30754	2.407905	2.50827	0.0076357	6.16567e-4	0.075226	0.0223951
chr7	157187321	157187421	3454433	0	+	0.33	(0.32,0.35]	chr7	322951	3	SS5_PROX	SS5_PROX:INTRON	UBE3C	ENSG00000009335.18	ENST00000611269.4:ENST00000348165.10:ENST00000389103.4	protein_coding	protein_coding	protein_coding	protein_coding	16	214	2	1.81229	2.40788	3.00347	0.00289483	1.70961e-4	0.0494641	0.0119955
chr7	135636254	135636352	3429142	0	+	0.285714	(0.28,0.32]	chr7	319821	2	INTRON	INTRON	NUP205	ENSG00000155561.15	ENST00000285968.11:ENST00000607647.5:ENST00000477620.5:ENST00000461255.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	111	2	2.12972	2.40787	2.68602	0.0055712	0.00413957	0.0649112	0.0588921
chr6	13665623	13665723	3058763	0	-	0.34	(0.32,0.35]	chr6	284542	64	INTRON	INTRON	RANBP9	ENSG00000010017.13	ENST00000011619.6	protein_coding	protein_coding	protein_coding	protein_coding	5	68	2	1.9182	2.407815	2.89743	0.0141462	0.0127608	0.103512	0.0926667
chr6	31753711	31753793	2843631	0	+	0.47561	(0.44,0.476]	chr6	267816	2	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	MSH5:MSH5-SAPCD1	ENSG00000204410.16:ENSG00000255152.8	ENST00000375755.8:ENST00000375750.9:ENST00000650702.1:ENST00000493662.6:ENST00000375703.7:ENST00000375740.7:ENST00000423982.6:ENST00000463144.5:ENST00000450148.5:ENST00000497269.5:ENST00000468602.5:ENST00000468136.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	53	677	2	2.29413	2.4077900000000003	2.52145	5.65433e-5	5.82352e-6	0.00655354	0.00169113
chr13	113264267	113264365	5548857	0	+	0.418367	(0.408,0.44]	chr13	530223	8	UTR3	UTR3:EXON_MRNA	CUL4A	ENSG00000139842.15	ENST00000375441.7:ENST00000326335.8:ENST00000451881.5:ENST00000617546.4:ENST00000375440.9	protein_coding	protein_coding	protein_coding	protein_coding	4	51	2	2.03431	2.407765	2.78122	0.015812	0.0154896	0.108998	0.101453
chr19	229811	229899	7108996	0	-	0.5	(0.476,0.515]	chr19	713716	3	EXON_MRNA	EXON_MRNA:INTRON	LINC01002	ENSG00000282508.2	ENST00000632624.2:ENST00000632075.1:ENST00000633179.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	16	207	2	2.27608	2.407765	2.53945	5.15195e-4	1.46851e-4	0.0208667	0.0105341
chr21	5564025	5564125	7364236	0	+	0.3	(0.28,0.32]	chr21	751617	98	INTRON	INTRON	ENSG00000274333	ENSG00000274333.4	ENST00000619252.4:ENST00000623449.3:ENST00000624627.3:ENST00000623436.3:ENST00000624368.3:ENST00000623914.3:ENST00000624516.1:ENST00000624412.3:ENST00000622939.3	lncRNA	lncRNA	lncRNA	lncRNA	4	64	2	1.81152	2.407735	3.00395	0.034446	0.0101329	0.147767	0.0850389
chr1	39005486	39005581	74546	0	+	0.347368	(0.32,0.35]	chr1	9650	16	UTR3	UTR3:EXON_MRNA	AKIRIN1	ENSG00000174574.16	ENST00000432648.8	protein_coding	protein_coding	protein_coding	protein_coding	3	49	2	2.30476	2.407685	2.51061	0.0364463	0.0151817	0.138959	0.108535
chr18	13046779	13046878	6877141	0	+	0.252525	[0,0.28]	chr18	681428	41	INTRON	INTRON	CEP192	ENSG00000101639.19	ENST00000325971.12:ENST00000506447.5:ENST00000589596.5:ENST00000513432.5:ENST00000511820.6:ENST00000510237.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	115	2	1.60899	2.40764	3.20629	0.0503341	5.56536e-4	0.156383	0.0214853
chr16	8039823	8039923	6440907	0	-	0.44	(0.408,0.44]	chr16	620351	322	INTRON	INTRON	ENSG00000260289	ENSG00000260289.2	ENST00000670665.1:ENST00000654046.1:ENST00000567103.2	lncRNA	lncRNA	lncRNA	lncRNA	4	53	2	1.92319	2.40756	2.89193	0.0247322	0.00950364	0.12011	0.0863579
chr17	40412003	40412088	6768316	0	-	0.423529	(0.408,0.44]	chr17	665981	2	SS3_PROX	SS3_PROX:INTRON	TOP2A	ENSG00000131747.15	ENST00000423485.6	protein_coding	protein_coding	protein_coding	protein_coding	10	123	2	2.0674	2.407495	2.74759	0.00200311	0.00102152	0.0413037	0.029231300000000002
chr4	121816043	121816143	2032497	0	+	0.48	(0.476,0.515]	chr4	201767	21	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	EXOSC9	ENSG00000123737.13	ENST00000379663.7:ENST00000243498.10:ENST00000513654.5:ENST00000512454.5:ENST00000503236.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	58	2	1.87147	2.407485	2.9435	0.0157856	0.00929849	0.109464	0.0817766
chr12	50159277	50159377	5323095	0	-	0.41	(0.408,0.44]	chr12	507529	46	INTRON	INTRON	CERS5	ENSG00000139624.14	ENST00000317551.12:ENST00000422340.6:ENST00000551697.5:ENST00000380189.8:ENST00000547787.5:ENST00000438450.6:ENST00000542320.5:ENST00000547800.2:ENST00000549389.5:ENST00000550258.5:ENST00000547455.5:ENST00000546514.1:ENST00000549942.1:ENST00000550899.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	51	2	1.75791	2.40748	3.05705	0.0378795	0.00658331	0.157034	0.0701901
chr3	170158572	170158671	1861598	0	-	0.40404	(0.378,0.408]	chr3	186655	75	INTRON	INTRON	PHC3	ENSG00000173889.16	ENST00000495893.7:ENST00000494943.5:ENST00000467570.5:ENST00000484931.5:ENST00000479467.5:ENST00000466189.5:ENST00000475729.5:ENST00000474275.5:ENST00000472330.5:ENST00000465896.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	59	2	2.11194	2.4074600000000004	2.70298	0.0292534	0.00325723	0.128055	0.0524329
chr12	54294163	54294257	5330924	0	-	0.478723	(0.476,0.515]	chr12	508648	4	INTRON	INTRON	NFE2	ENSG00000123405.14	ENST00000435572.7:ENST00000312156.8:ENST00000540264.2:ENST00000553070.5:ENST00000553198.1	protein_coding	protein_coding	protein_coding	protein_coding	47	594	2	2.23621	2.40745	2.57869	8.35533e-5	5.87153e-6	0.00815123	0.00170306
chr16	81467999	81468099	6405229	0	+	0.6	(0.57,1]	chr16	615026	221	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8	protein_coding	protein_coding	protein_coding	protein_coding	3	23	2	2.28103	2.4074299999999997	2.53383	0.02547	0.0151554	0.12011	0.108535
chr7	157143133	157143233	3453981	0	+	0.38	(0.378,0.408]	chr7	322895	34	INTRON	INTRON	UBE3C	ENSG00000009335.18	ENST00000611269.4:ENST00000348165.10:ENST00000389103.4:ENST00000430750.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	60	2	1.66594	2.4074299999999997	3.14892	0.0320222	0.00499984	0.144995	0.0617433
chr15	50370606	50370706	6022197	0	+	0.27	[0,0.28]	chr15	573922	158	EXON_LNCRNA	EXON_LNCRNA	GABPB1-AS1	ENSG00000244879.9	ENST00000668321.1:ENST00000499624.3:ENST00000648591.1	lncRNA	lncRNA	lncRNA	lncRNA	6	114	2	2.06779	2.407365	2.74694	0.0096412	0.00547306	0.0870233	0.0648867
chr8	60218468	60218567	3956265	0	-	0.373737	(0.35,0.378]	chr8	362953	92	INTRON	INTRON	CA8	ENSG00000178538.10	ENST00000317995.5:ENST00000524872.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	56	2	1.70607	2.40735	3.10863	0.0482819	0.00470896	0.153283	0.0631419
chr8	129900132	129900231	4062761	0	-	0.373737	(0.35,0.378]	chr8	369808	29	INTRON	INTRON	CYRIB	ENSG00000153310.21	ENST00000694912.1:ENST00000519824.6:ENST00000523288.5:ENST00000519110.5:ENST00000401979.6:ENST00000523509.5:ENST00000522746.5:ENST00000517654.5:ENST00000522250.5:ENST00000519540.5:ENST00000522941.5:ENST00000519142.5:ENST00000518879.5:ENST00000522702.5:ENST00000521223.5:ENST00000520204.5:ENST00000518283.5:ENST00000523993.5:ENST00000520254.5:ENST00000519020.5:ENST00000518167.5:ENST00000517672.5:ENST00000519070.5:ENST00000522361.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	56	2	1.70607	2.40735	3.10863	0.0482819	0.00470896	0.153283	0.0631419
chr21	46320436	46320536	7471656	0	-	0.43	(0.408,0.44]	chr21	761759	4	SS5_PROX	SS5_PROX:INTRON	C21orf58	ENSG00000160298.18	ENST00000397683.5:ENST00000397682.7:ENST00000291691.12:ENST00000397680.5:ENST00000445935.5:ENST00000475776.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	105	2	1.9588699999999999	2.407295	2.85572	0.00847845	4.26582e-4	0.0778146	0.0184578
chr15	66607921	66608020	6051040	0	+	0.363636	(0.35,0.378]	chr15	576221	253	INTRON	INTRON	LINC01169	ENSG00000259471.1	ENST00000558797.1	lncRNA	lncRNA	lncRNA	lncRNA	5	64	2	1.44934	2.40724	3.36514	0.0658369	0.00173699	0.181518	0.03851
chr7	128333762	128333862	3635155	0	-	0.27	[0,0.28]	chr7	337882	4	SS3_PROX	SS3_PROX:INTRON	RBM28	ENSG00000106344.8	ENST00000223073.6:ENST00000415472.6:ENST00000487602.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	61	2	2.3719	2.40716	2.44242	0.0491024	0.0139689	0.155269	0.10247
chr10	69204726	69204825	4445325	0	+	0.393939	(0.378,0.408]	chr10	410148	13	INTRON	INTRON	SUPV3L1	ENSG00000156502.14	ENST00000359655.9	protein_coding	protein_coding	protein_coding	protein_coding	3	44	2	1.76032	2.4071249999999997	3.05393	0.0721577	0.00551532	0.187433	0.0672816
chr3	15785246	15785346	1623694	0	-	0.38	(0.378,0.408]	chr3	168013	32	INTRON	INTRON	ANKRD28	ENSG00000206560.12	ENST00000399451.6:ENST00000624145.3:ENST00000683139.1:ENST00000412318.5:ENST00000497037.5:ENST00000451422.1:ENST00000498524.5:ENST00000439830.5:ENST00000461696.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	44	2	1.76032	2.4071249999999997	3.05393	0.0721577	0.00551532	0.187433	0.0672816
chr5	69175637	69175737	2380066	0	+	0.4	(0.378,0.408]	chr5	229176	1	SS5_PROX	SS5_PROX:INTRON	CCNB1	ENSG00000134057.15	ENST00000506572.5:ENST00000256442.10:ENST00000505500.5:ENST00000507798.1	protein_coding	protein_coding	protein_coding	protein_coding	3	44	2	1.76032	2.4071249999999997	3.05393	0.0721577	0.00551532	0.187433	0.0672816
chr7	92346060	92346159	3353803	0	+	0.40404	(0.378,0.408]	chr7	312530	6	INTRON	INTRON	ANKIB1	ENSG00000001629.10	ENST00000265742.8:ENST00000413588.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	44	2	1.76032	2.4071249999999997	3.05393	0.0721577	0.00551532	0.187433	0.0672816
chr17	75216741	75216836	6674376	0	+	0.452632	(0.44,0.476]	chr17	651375	5	INTRON	INTRON	NUP85	ENSG00000125450.11	ENST00000245544.9:ENST00000583948.5:ENST00000579324.5:ENST00000449421.6:ENST00000581104.5:ENST00000579298.5:ENST00000578830.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	10	130	2	1.88052	2.407115	2.93371	0.00808369	9.52156e-5	0.0766625	0.00819861
chr1	1758600	1758700	361534	0	-	0.31	(0.28,0.32]	chr1	42196	1	SS5_PROX	SS5_PROX:INTRON	NADK	ENSG00000008130.15	ENST00000378625.5:ENST00000341991.7:ENST00000341426.9:ENST00000492845.6:ENST00000492768.5:ENST00000460602.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	96	2	1.26409	2.40702	3.54995	0.0570949	0.00157396	0.186331	0.0361918
chr10	125053236	125053336	4713261	0	-	0.58	(0.57,1]	chr10	434897	137	INTRON	INTRON	CTBP2	ENSG00000175029.17	ENST00000337195.9:ENST00000411419.6:ENST00000494626.6:ENST00000531469.5:ENST00000460976.5:ENST00000476817.1:ENST00000530884.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	23	2	1.91937	2.407	2.89463	0.0468438	0.00788262	0.167716	0.076155
chr19	2136610	2136710	7115397	0	-	0.64	(0.57,1]	chr19	715252	2	SS5_PROX	SS5_PROX:INTRON	AP3D1	ENSG00000065000.19	ENST00000643116.3:ENST00000345016.9:ENST00000643010.1:ENST00000591284.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	23	2	1.91937	2.407	2.89463	0.0468438	0.00788262	0.167716	0.076155
chr2	65409996	65410096	1143971	0	-	0.33	(0.32,0.35]	chr2	122242	324	INTRON	INTRON	SPRED2	ENSG00000198369.10	ENST00000356388.9:ENST00000440972.1	protein_coding	protein_coding	protein_coding	protein_coding	6	92	2	1.91908	2.406915	2.89475	0.0169079	0.00160352	0.103859	0.0367961
chr6	147263343	147263441	2989301	0	+	0.326531	(0.32,0.35]	chr6	280025	6	INTRON	INTRON	STXBP5	ENSG00000164506.15	ENST00000321680.11:ENST00000367481.7:ENST00000546097.5:ENST00000367480.7	protein_coding	protein_coding	protein_coding	protein_coding	6	92	2	1.91908	2.406915	2.89475	0.0169079	0.00160352	0.103859	0.0367961
chr1	1730744	1730842	361282	0	-	0.581633	(0.57,1]	chr1	42112	50	INTRON	INTRON	ENSG00000268575:SLC35E2A	ENSG00000268575.1:ENSG00000215790.8	ENST00000598846.1:ENST00000647043.1	lncRNA	lncRNA	lncRNA:transcribed_unprocessed_pseudogene	lncRNA:processed_transcript	5	40	2	2.05026	2.40691	2.76356	0.0321326	5.18582e-4	0.145026	0.0209322
chr19	1837740	1837840	7113724	0	-	0.66	(0.57,1]	chr19	714891	65	INTRON	INTRON	REXO1	ENSG00000079313.15	ENST00000170168.9:ENST00000587524.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	40	2	2.05026	2.40691	2.76356	0.0321326	5.18582e-4	0.145026	0.0209322
chr11	2945746	2945846	4891506	0	-	0.34	(0.32,0.35]	chr11	458260	1	SS3_PROX	SS3_PROX:INTRON	NAP1L4	ENSG00000205531.13	ENST00000620138.4:ENST00000380542.9:ENST00000469805.5:ENST00000469089.5:ENST00000526115.5:ENST00000492594.6:ENST00000526023.5:ENST00000492685.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	111	2	2.18299	2.406885	2.63078	0.00505063	0.00218887	0.0646039	0.0417893
chr3	41200681	41200781	1403036	0	+	0.43	(0.408,0.44]	chr3	147416	3	SS5_PROX	SS5_PROX:INTRON	CTNNB1	ENSG00000168036.18	ENST00000643541.1:ENST00000426215.5:ENST00000645210.1:ENST00000646381.1:ENST00000405570.6:ENST00000642248.1:ENST00000433400.6:ENST00000642992.1:ENST00000431914.6:ENST00000642836.1:ENST00000396185.8:ENST00000642986.1:ENST00000644678.1:ENST00000643031.1:ENST00000396183.7:ENST00000645982.1:ENST00000453024.6:ENST00000645900.1:ENST00000647264.1:ENST00000646174.1:ENST00000643992.1:ENST00000642886.1:ENST00000647390.1:ENST00000643052.1:ENST00000488914.2:ENST00000349496.11:ENST00000642426.1:ENST00000646074.1:ENST00000645276.1:ENST00000644138.1:ENST00000646116.1:ENST00000644873.1:ENST00000643865.1:ENST00000644867.1:ENST00000646725.1:ENST00000645493.1:ENST00000646369.1:ENST00000643977.1:ENST00000647413.1:ENST00000644524.1:ENST00000645305.1:ENST00000643297.1:ENST00000450969.6:ENST00000642315.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	59	2	1.44993	2.406855	3.36378	0.0638951	0.0016048	0.177824	0.0367961
chr1	12329133	12329230	29256	0	+	0.247423	[0,0.28]	chr1	3574	9	INTRON	INTRON	VPS13D	ENSG00000048707.15	ENST00000620676.6:ENST00000613099.4:ENST00000011700.10:ENST00000646917.1:ENST00000460333.5:ENST00000487188.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	61	2	1.95356	2.4068199999999997	2.86008	0.0463152	0.0177015	0.166231	0.105304
chrX	53614233	53614333	7821152	0	-	0.28	[0,0.28]	chrX	798123	3	SS5_PROX	SS5_PROX:INTRON	HUWE1	ENSG00000086758.16	ENST00000262854.11:ENST00000342160.7:ENST00000612484.4:ENST00000218328.12	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	61	2	1.95356	2.4068199999999997	2.86008	0.0463152	0.0177015	0.166231	0.105304
chr3	160407559	160407658	1544677	0	+	0.282828	(0.28,0.32]	chr3	160690	25	INTRON	INTRON	SMC4	ENSG00000113810.16	ENST00000472282.5:ENST00000472991.5:ENST00000357388.8:ENST00000469762.5:ENST00000468653.5:ENST00000467468.5:ENST00000469858.5:ENST00000489573.5:ENST00000462787.5:ENST00000344722.5:ENST00000470240.5:ENST00000497984.5:ENST00000487747.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	167	2	2.40262	2.406785	2.41095	0.00308492	7.45509e-4	0.0496985	0.0250079
chr2	54978837	54978936	1120685	0	-	0.252525	[0,0.28]	chr2	120130	37	INTRON	INTRON	RTN4	ENSG00000115310.19	ENST00000394609.6:ENST00000404909.5:ENST00000394611.6:ENST00000317610.11:ENST00000357732.8:ENST00000337526.11:ENST00000357376.7:ENST00000405240.5:ENST00000486085.5:ENST00000438462.1	protein_coding	protein_coding	protein_coding	protein_coding	14	154	2	1.26244	2.40678	3.55112	0.0340553	0.00205086	0.146815	0.0409264
chr5	157850532	157850632	2758569	0	-	0.48	(0.476,0.515]	chr5	260304	326	INTRON	INTRON	CLINT1	ENSG00000113282.14	ENST00000523094.5:ENST00000411809.7:ENST00000530742.5:ENST00000523908.5	protein_coding	protein_coding	protein_coding	protein_coding	7	86	2	2.04194	2.406725	2.77151	0.00499341	0.00288481	0.0646039	0.0475859
chr10	130178545	130178643	4536760	0	+	0.377551	(0.35,0.378]	chr10	418830	31	INTRON	INTRON	GLRX3	ENSG00000108010.12	ENST00000331244.10:ENST00000481034.1:ENST00000368644.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	46	2	2.34278	2.406715	2.47065	0.0386172	0.0129593	0.142656	0.0991015
chr19	10635709	10635803	7013106	0	+	0.361702	(0.35,0.378]	chr19	696709	2	SS5_PROX	SS5_PROX:INTRON	SLC44A2	ENSG00000129353.15	ENST00000588465.5:ENST00000407327.8:ENST00000586078.5:ENST00000335757.10:ENST00000588393.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	46	2	2.34278	2.406715	2.47065	0.0386172	0.0129593	0.142656	0.0991015
chr19	40362375	40362474	7069023	0	+	0.373737	(0.35,0.378]	chr19	706109	23	INTRON	INTRON	PLD3	ENSG00000105223.20	ENST00000599685.5:ENST00000600479.5:ENST00000392032.6:ENST00000598962.5:ENST00000409419.5:ENST00000409587.5:ENST00000602131.5:ENST00000594085.5:ENST00000409735.9:ENST00000356508.9:ENST00000600948.5:ENST00000594908.5:ENST00000596682.5:ENST00000409281.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	55	2	1.82281	2.406625	2.99044	0.0316938	0.00894806	0.144635	0.0799922
chr7	119758556	119758656	3628924	0	-	0.29	(0.28,0.32]	chr7	337323	60	INTRON	INTRON	LINC02476	ENSG00000225546.6	ENST00000660268.1:ENST00000431071.5:ENST00000426413.2	lncRNA	lncRNA	lncRNA	lncRNA	5	87	2	1.99988	2.40661	2.81334	0.0228757	0.00248627	0.118056	0.0461207
chr11	66721932	66722032	4969693	0	-	0.45	(0.44,0.476]	chr11	468904	4	SS3_PROX	SS3_PROX:INTRON	SPTBN2	ENSG00000173898.15	ENST00000533211.6:ENST00000647510.2:ENST00000611817.5:ENST00000309996.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	160	2	2.29969	2.4066099999999997	2.51353	8.95839e-4	4.18963e-4	0.0273866	0.0189528
chr4	34334828	34334928	2125654	0	-	0.43	(0.408,0.44]	chr4	209580	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	LINC02484	ENSG00000248685.6	ENST00000658479.1	lncRNA	lncRNA	lncRNA	lncRNA	5	61	2	2.15894	2.40657	2.6542	0.0227514	0.00504142	0.117618	0.0646039
chr1	184971201	184971301	603020	0	-	0.46	(0.44,0.476]	chr1	71774	715	INTRON	INTRON	NIBAN1	ENSG00000135842.17	ENST00000367511.4	protein_coding	protein_coding	protein_coding	protein_coding	6	82	2	2.10892	2.4065649999999996	2.70421	0.0132897	9.23275e-4	0.0944742	0.0278392
chr15	50601574	50601673	6172410	0	-	0.40404	(0.378,0.408]	chr15	588282	19	INTRON	INTRON	TRPM7	ENSG00000092439.16	ENST00000646667.1:ENST00000560955.5	protein_coding	protein_coding	protein_coding	protein_coding	9	107	2	1.53525	2.406545	3.27784	0.0243919	2.17147e-4	0.12011	0.0129235
chr4	39750882	39750981	1953521	0	+	0.484848	(0.476,0.515]	chr4	195642	47	INTRON	INTRON	UBE2K	ENSG00000078140.14	ENST00000510934.5:ENST00000261427.10:ENST00000438068.6:ENST00000513231.5:ENST00000503368.5:ENST00000445950.2:ENST00000510719.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	64	2	1.61324	2.406495	3.19975	0.026684	0.00383299	0.134419	0.0542786
chr11	46830346	46830446	4948607	0	-	0.56	(0.515,0.57]	chr11	463857	36	INTRON	INTRON	CKAP5	ENSG00000175216.15	ENST00000529230.6:ENST00000312055.9:ENST00000525248.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	72	2	1.91916	2.406475	2.89379	0.0231902	2.98479e-4	0.118148	0.0154922
chr5	131783926	131784026	2720614	0	-	0.41	(0.408,0.44]	chr5	255730	389	INTRON	INTRON	FNIP1	ENSG00000217128.13	ENST00000510461.6:ENST00000307954.12:ENST00000307968.11:ENST00000511848.1	protein_coding	protein_coding	protein_coding	protein_coding	13	172	2	2.15055	2.4063499999999998	2.66215	0.00257687	6.68072e-5	0.0451926	0.00677892
chr2	182950422	182950520	1285123	0	-	0.234694	[0,0.28]	chr2	135311	34	INTRON	INTRON	NCKAP1	ENSG00000061676.15	ENST00000361354.9:ENST00000360982.2	protein_coding	protein_coding	protein_coding	protein_coding	4	73	2	1.99345	2.406335	2.81922	0.0211881	0.0197411	0.123133	0.109608
chr1	113948648	113948747	191990	0	+	0.363636	(0.35,0.378]	chr1	21149	68	INTRON	INTRON	HIPK1	ENSG00000163349.22	ENST00000426820.7:ENST00000626993.2:ENST00000369559.8:ENST00000369558.5:ENST00000369561.8:ENST00000369555.6	protein_coding	protein_coding	protein_coding	protein_coding	3	46	2	1.9755	2.406295	2.83709	0.0398617	0.01435	0.161534	0.0966737
chr11	2963275	2963374	4891697	0	-	0.555556	(0.515,0.57]	chr11	458309	30	INTRON	INTRON	NAP1L4	ENSG00000205531.13	ENST00000620138.4:ENST00000380542.9:ENST00000526115.5:ENST00000492685.5:ENST00000528363.5:ENST00000532325.6:ENST00000448187.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	44	2	1.49871	2.406295	3.31388	0.0770828	0.00174704	0.196285	0.0386026
chr18	12593912	12594012	6948648	0	-	0.37	(0.35,0.378]	chr18	687385	51	INTRON	INTRON	SPIRE1	ENSG00000134278.16	ENST00000409402.9:ENST00000410092.7:ENST00000309836.9:ENST00000440472.6:ENST00000453447.6:ENST00000449797.5:ENST00000497844.6:ENST00000462226.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	46	2	1.9755	2.406295	2.83709	0.0398617	0.01435	0.161534	0.0966737
chr4	24553146	24553244	2118694	0	-	0.520408	(0.515,0.57]	chr4	209230	38	INTRON	INTRON	DHX15	ENSG00000109606.13	ENST00000336812.5	protein_coding	protein_coding	protein_coding	protein_coding	4	44	2	1.49871	2.406295	3.31388	0.0770828	0.00174704	0.196285	0.0386026
chr6	109102368	109102467	2935462	0	+	0.353535	(0.35,0.378]	chr6	276349	17	INTRON	INTRON	CEP57L1	ENSG00000183137.15	ENST00000521277.5:ENST00000521737.5:ENST00000407272.5:ENST00000519286.5:ENST00000518329.5:ENST00000522461.5:ENST00000518853.5:ENST00000521522.5:ENST00000524064.5:ENST00000522608.5:ENST00000517392.6:ENST00000519407.5:ENST00000521503.5:ENST00000519095.5:ENST00000520610.5:ENST00000368968.6:ENST00000522490.5:ENST00000523209.5:ENST00000368970.6:ENST00000520883.5:ENST00000520761.1:ENST00000523787.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	46	2	1.9755	2.406295	2.83709	0.0398617	0.01435	0.161534	0.0966737
chr6	7302755	7302853	3053286	0	-	0.295918	(0.28,0.32]	chr6	283970	8	INTRON	INTRON	SSR1	ENSG00000124783.14	ENST00000474597.5:ENST00000650389.1:ENST00000244763.9:ENST00000397511.6:ENST00000489567.5:ENST00000479365.5:ENST00000462112.1:ENST00000488834.5:ENST00000483409.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	53	2	2.24061	2.40628	2.57195	0.0331711	0.0194267	0.133994	0.119831
chr10	819247	819344	4541438	0	-	0.42268	(0.408,0.44]	chr10	419215	15	EXON_MRNA	EXON_MRNA:INTRON	LARP4B	ENSG00000107929.16	ENST00000614908.5:ENST00000688365.1:ENST00000316157.8:ENST00000690516.1:ENST00000689323.1:ENST00000688042.1:ENST00000609318.5:ENST00000690211.1:ENST00000448368.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	95	2	1.74555	2.406265	3.06698	0.0118908	8.51999e-4	0.0962115	0.0267428
chr5	32402705	32402805	2598901	0	-	0.43	(0.408,0.44]	chr5	246931	2	SS5_PROX	SS5_PROX:INTRON	ZFR	ENSG00000056097.16	ENST00000265069.13	protein_coding	protein_coding	protein_coding	protein_coding	8	95	2	1.74555	2.406265	3.06698	0.0118908	8.51999e-4	0.0962115	0.0267428
chr2	167938161	167938257	1259187	0	-	0.25	[0,0.28]	chr2	133350	17	INTRON	INTRON	B3GALT1-AS1	ENSG00000235335.3	ENST00000430546.2:ENST00000657553.1:ENST00000670221.1:ENST00000436982.2:ENST00000654994.1	lncRNA	lncRNA	lncRNA	lncRNA	4	73	2	1.79953	2.4062	3.01287	0.0377477	0.0115634	0.156608	0.0889104
chr10	73134124	73134216	4647937	0	-	0.293478	(0.28,0.32]	chr10	427574	6	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	ECD	ENSG00000122882.11	ENST00000494307.1:ENST00000372979.9	protein_coding	protein_coding	protein_coding	protein_coding	3	53	2	2.08149	2.40613	2.73077	0.031124	0.0220748	0.143644	0.115395
chr12	104322497	104322595	5210375	0	+	0.540816	(0.515,0.57]	chr12	493254	8	INTRON	INTRON	TXNRD1	ENSG00000198431.17	ENST00000525566.6:ENST00000503506.6:ENST00000526691.5:ENST00000526390.5:ENST00000529546.5:ENST00000529751.1:ENST00000524698.5:ENST00000527688.5:ENST00000526950.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	38	2	2.23915	2.406065	2.57298	0.0596178	0.00506495	0.16883600000000001	0.0646039
chr1	165760775	165760874	575903	0	-	0.292929	(0.28,0.32]	chr1	69865	8	INTRON	INTRON	TMCO1	ENSG00000143183.18	ENST00000612311.4:ENST00000367881.11:ENST00000580248.5:ENST00000464650.5:ENST00000476143.7:ENST00000481278.5:ENST00000465705.4:ENST00000628579.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	40	2	2.29724	2.40606	2.51488	0.0554156	0.0380957	0.18407	0.141678
chr22	23191788	23191887	7483316	0	+	0.525253	(0.515,0.57]	chr22	763531	92	INTRON	INTRON	BCR	ENSG00000186716.21	ENST00000479188.5:ENST00000359540.7:ENST00000305877.13	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	44	2	1.75372	2.4060550000000003	3.05839	0.0386904	0.00485936	0.14279	0.0640618
chr7	148852604	148852704	3670446	0	-	0.4	(0.378,0.408]	chr7	340628	49	INTRON	INTRON	EZH2	ENSG00000106462.12	ENST00000683292.1:ENST00000320356.7:ENST00000492143.5:ENST00000478654.5:ENST00000350995.6:ENST00000460911.5:ENST00000683744.1:ENST00000682317.1:ENST00000682263.1:ENST00000684300.1:ENST00000476773.5:ENST00000483967.5:ENST00000498186.5:ENST00000483012.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	15	208	2	1.9876	2.40605	2.8245	0.00411166	1.54965e-5	0.0564928	0.00296676
chr7	6376615	6376715	3273041	0	+	0.4	(0.378,0.408]	chr7	304311	3	INTRON	INTRON	RAC1	ENSG00000136238.19	ENST00000348035.9:ENST00000356142.4:ENST00000696666.1:ENST00000488373.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	81	2	2.256	2.406035	2.55607	0.00704647	0.00336115	0.0718189	0.0532154
chr2	20293377	20293477	1076198	0	-	0.45	(0.44,0.476]	chr2	114982	22	INTRON	INTRON	PUM2	ENSG00000055917.16	ENST00000338086.9:ENST00000361078.7:ENST00000440577.5	protein_coding	protein_coding	protein_coding	protein_coding	8	105	2	2.35446	2.405965	2.45747	0.00536475	6.55527e-4	0.0642754	0.0232396
chr21	46515688	46515787	7423076	0	+	0.515152	(0.476,0.515]	chr21	757010	37	INTRON	INTRON	DIP2A	ENSG00000160305.18	ENST00000417564.3:ENST00000651436.1:ENST00000400274.5:ENST00000457905.7:ENST00000466639.5:ENST00000435722.7:ENST00000473752.5:ENST00000494435.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	42	2	1.86492	2.40592	2.94692	0.0550347	0.00794331	0.165463	0.0797304
chr11	2988828	2988928	4891965	0	-	0.34	(0.32,0.35]	chr11	458372	3	SS5_PROX	SS5_PROX:INTRON	NAP1L4	ENSG00000205531.13	ENST00000620138.4:ENST00000380542.9:ENST00000526115.5:ENST00000532325.6:ENST00000448187.5:ENST00000399614.6:ENST00000430811.5:ENST00000529361.5:ENST00000528968.5:ENST00000530064.5:ENST00000526842.5:ENST00000531291.5:ENST00000455338.6:ENST00000534372.1	protein_coding	protein_coding	protein_coding	protein_coding	4	66	2	2.22429	2.40591	2.58753	0.0226421	0.00560122	0.117557	0.0678837
chr20	3944181	3944280	7308688	0	-	0.333333	(0.32,0.35]	chr20	744273	88	INTRON	INTRON	RNF24	ENSG00000101236.17	ENST00000336095.10:ENST00000358395.11:ENST00000432261.6:ENST00000545616.2	protein_coding	protein_coding	protein_coding	protein_coding	4	66	2	2.22429	2.40591	2.58753	0.0226421	0.00560122	0.117557	0.0678837
chr7	22857173	22857271	3288715	0	+	0.357143	(0.35,0.378]	chr7	305434	2	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	SNHG26	ENSG00000228649.10	ENST00000415611.8:ENST00000667557.1:ENST00000422542.4:ENST00000656301.1:ENST00000661147.1:ENST00000656687.2:ENST00000662021.1:ENST00000691516.1:ENST00000685098.1:ENST00000689892.1:ENST00000663057.1:ENST00000657608.1:ENST00000688000.1:ENST00000690219.1:ENST00000658124.1:ENST00000661582.1:ENST00000671680.1	lncRNA	lncRNA	lncRNA	lncRNA	4	63	2	2.2877	2.405825	2.52395	0.0155765	0.00824736	0.109411	0.0773378
chr7	87153538	87153632	3345627	0	+	0.37234	(0.35,0.378]	chr7	311614	2	INTRON	INTRON	DMTF1	ENSG00000135164.19	ENST00000413276.6:ENST00000447863.5:ENST00000579677.5:ENST00000425406.5:ENST00000446796.6:ENST00000420131.5:ENST00000414630.6:ENST00000547146.6:ENST00000579850.5:ENST00000453049.5:ENST00000331242.12:ENST00000430405.7:ENST00000449088.7:ENST00000448598.5:ENST00000428819.5:ENST00000432937.6:ENST00000584619.5:ENST00000432366.6:ENST00000423590.6:ENST00000394703.9:ENST00000584457.5:ENST00000580710.5:ENST00000579592.5:ENST00000434534.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	10	120	2	1.89839	2.40578	2.91317	0.00370002	0.00189062	0.0561162	0.0392053
chr9	135941380	135941474	4372359	0	-	0.414894	(0.408,0.44]	chr9	402514	13	INTRON	INTRON	UBAC1	ENSG00000130560.9	ENST00000371756.4:ENST00000489050.5:ENST00000465873.5:ENST00000471163.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	14	182	2	2.37911	2.40578	2.43245	8.64728e-4	1.83922e-4	0.0268667	0.0118123
chr18	12715340	12715439	6876033	0	+	0.363636	(0.35,0.378]	chr18	681236	22	INTRON	INTRON	PSMG2	ENSG00000128789.21	ENST00000585331.6:ENST00000586445.5:ENST00000590217.5:ENST00000586587.1:ENST00000317615.11	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	34	2	2.1617	2.4057500000000003	2.6498	0.0771502	0.0210137	0.196285	0.122348
chr2	85627861	85627959	822134	0	+	0.357143	(0.35,0.378]	chr2	91667	18	INTRON	INTRON	USP39	ENSG00000168883.20	ENST00000459775.5:ENST00000450066.6:ENST00000613444.4:ENST00000409025.5:ENST00000409470.5:ENST00000323701.11:ENST00000409766.7:ENST00000493829.5:ENST00000467885.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	34	2	2.1617	2.4057500000000003	2.6498	0.0771502	0.0210137	0.196285	0.122348
chr2	113905851	113905949	854402	0	+	0.357143	(0.35,0.378]	chr2	95897	7	INTRON	INTRON	ACTR3	ENSG00000115091.12	ENST00000443297.5:ENST00000263238.7:ENST00000415792.5:ENST00000446821.5:ENST00000535589.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	34	2	2.1617	2.4057500000000003	2.6498	0.0771502	0.0210137	0.196285	0.122348
chr2	169915144	169915244	909030	0	+	0.36	(0.35,0.378]	chr2	100282	6	INTRON	INTRON	UBR3	ENSG00000144357.18	ENST00000272793.11	protein_coding	protein_coding	protein_coding	protein_coding	2	34	2	2.1617	2.4057500000000003	2.6498	0.0771502	0.0210137	0.196285	0.122348
chr5	146228545	146228645	2514366	0	+	0.45	(0.44,0.476]	chr5	240165	2	SS3_PROX	SS3_PROX:INTRON	ENSG00000275740:RBM27	ENSG00000275740.1:ENSG00000091009.8	ENST00000506502.2:ENST00000265271.7	protein_coding	protein_coding	protein_coding	protein_coding	7	70	2	1.4592	2.405735	3.35227	0.0342963	0.0022005699999999998	0.147255	0.0417893
chr7	105027429	105027529	3374750	0	+	0.34	(0.32,0.35]	chr7	315854	125	INTRON	INTRON	KMT2E	ENSG00000005483.22	ENST00000622386.2:ENST00000257745.9:ENST00000334884.9:ENST00000311117.8:ENST00000478990.5:ENST00000480368.5:ENST00000495267.5:ENST00000476671.5:ENST00000667857.1:ENST00000474203.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	143	2	2.05211	2.40563	2.75915	0.0106769	1.57956e-4	0.0861859	0.0108016
chr1	243254470	243254539	668713	0	-	0.652174	(0.57,1]	chr1	79333	1	INTRON	INTRON	CEP170	ENSG00000143702.16	ENST00000366544.5:ENST00000366543.5:ENST00000366542.6:ENST00000522522.5:ENST00000522995.1:ENST00000523581.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	28	2	2.01216	2.405525	2.79889	0.0163389	0.0110274	0.101571	0.0927187
chr19	341889	341989	7109589	0	-	0.61	(0.57,1]	chr19	713832	14	INTRON	INTRON	MIER2	ENSG00000105556.12	ENST00000264819.7:ENST00000635755.1:ENST00000586994.7:ENST00000587966.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	28	2	2.01216	2.405525	2.79889	0.0163389	0.0110274	0.101571	0.0927187
chr1	44640973	44641072	92183	0	+	0.373737	(0.35,0.378]	chr1	12216	22	INTRON	INTRON	RNF220	ENSG00000187147.18	ENST00000355387.6:ENST00000361799.7:ENST00000372247.6:ENST00000440132.2:ENST00000335497.11:ENST00000474064.5:ENST00000471494.5:ENST00000497469.5:ENST00000475378.5:ENST00000484745.5:ENST00000474394.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	34	2	2.32443	2.4055	2.48657	0.0544216	0.032907	0.164972	0.145164
chr12	56106716	56106816	5145604	0	+	0.36	(0.35,0.378]	chr12	486155	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ENSG00000257411:PA2G4	ENSG00000257411.2:ENSG00000170515.14	ENST00000548861.2:ENST00000552766.5:ENST00000303305.11:ENST00000553057.5:ENST00000551061.1:ENST00000550166.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	34	2	2.32443	2.4055	2.48657	0.0544216	0.032907	0.164972	0.145164
chr5	139192647	139192747	2735404	0	-	0.36	(0.35,0.378]	chr5	257604	42	INTRON	INTRON	SIL1	ENSG00000120725.13	ENST00000394817.7:ENST00000265195.9:ENST00000509534.5:ENST00000508639.5:ENST00000507002.5:ENST00000505830.5:ENST00000504666.5:ENST00000509400.5:ENST00000440765.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	34	2	2.32443	2.4055	2.48657	0.0544216	0.032907	0.164972	0.145164
chr5	140405267	140405367	2502860	0	+	0.37	(0.35,0.378]	chr5	239166	26	INTRON	INTRON	ANKHD1	ENSG00000131503.21	ENST00000297183.10:ENST00000616482.4:ENST00000360839.7:ENST00000421134.5:ENST00000394723.7:ENST00000511151.5:ENST00000394722.7	protein_coding	protein_coding	protein_coding	protein_coding	2	34	2	2.32443	2.4055	2.48657	0.0544216	0.032907	0.164972	0.145164
chr7	149246788	149246887	3445721	0	+	0.363636	(0.35,0.378]	chr7	321412	64	INTRON	INTRON	ZNF212	ENSG00000170260.9	ENST00000335870.7:ENST00000486371.1:ENST00000462724.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	34	2	2.32443	2.4055	2.48657	0.0544216	0.032907	0.164972	0.145164
chr8	19850772	19850866	3709906	0	+	0.351064	(0.35,0.378]	chr8	344219	12	INTRON	INTRON	INTS10	ENSG00000104613.12	ENST00000397977.8:ENST00000520670.1:ENST00000521008.1:ENST00000523772.1:ENST00000520827.1:ENST00000517546.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	34	2	2.32443	2.4055	2.48657	0.0544216	0.032907	0.164972	0.145164
chrX	41334891	41334968	7645650	0	+	0.532468	(0.515,0.57]	chrX	782483	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	DDX3X	ENSG00000215301.11	ENST00000625837.2:ENST00000626301.2:ENST00000629785.2:ENST00000630255.2:ENST00000630370.2:ENST00000630858.2:ENST00000629496.3:ENST00000610559.5:ENST00000611546.2:ENST00000478993.5:ENST00000457138.7:ENST00000643821.1:ENST00000644876.2:ENST00000399959.7:ENST00000644074.1:ENST00000645338.1:ENST00000646196.1:ENST00000642793.1:ENST00000646940.1:ENST00000644307.1:ENST00000645561.1:ENST00000645080.1:ENST00000642597.1:ENST00000642722.1:ENST00000644109.1:ENST00000644958.1:ENST00000646122.1:ENST00000644513.1:ENST00000645589.1:ENST00000441189.4:ENST00000646822.1:ENST00000631641.2:ENST00000615742.4:ENST00000647219.1:ENST00000480592.6:ENST00000646223.1:ENST00000643963.1:ENST00000646319.1:ENST00000645783.1:ENST00000642624.1:ENST00000542215.5:ENST00000644073.1:ENST00000644677.1:ENST00000615313.5:ENST00000622373.1:ENST00000642322.1:ENST00000622198.5:ENST00000645120.1:ENST00000646107.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	12	141	2	2.06367	2.405455	2.74724	0.00266204	7.34597e-5	0.0476185	0.00767614
chr2	190896967	190897067	959644	0	+	0.35	(0.32,0.35]	chr2	104167	5	INTRON	INTRON	GLS	ENSG00000115419.13	ENST00000320717.8:ENST00000338435.8:ENST00000469774.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	12	183	2	1.94084	2.40538	2.86992	0.00594844	8.3284e-5	0.0674604	0.00768173
chr11	70419345	70419445	4821833	0	+	0.46	(0.44,0.476]	chr11	449635	2	SS3_PROX	SS3_PROX:INTRON	CTTN	ENSG00000085733.16	ENST00000346329.7:ENST00000301843.13:ENST00000376561.7:ENST00000415461.2:ENST00000532334.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	59	2	2.00793	2.40534	2.80275	0.0146513	0.00937685	0.0982604	0.0859966
chr10	63392769	63392869	4634659	0	-	0.43	(0.408,0.44]	chr10	426236	119	INTRON	INTRON	JMJD1C	ENSG00000171988.20	ENST00000399262.7:ENST00000633035.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	32	2	2.2957	2.40531	2.51492	0.0516458	0.0329839	0.176696	0.133816
chr3	32710682	32710779	1393369	0	+	0.42268	(0.408,0.44]	chr3	145868	15	INTRON	INTRON	CNOT10	ENSG00000182973.20	ENST00000331889.10:ENST00000328834.10:ENST00000435630.5:ENST00000494439.5:ENST00000556853.5:ENST00000454516.7:ENST00000485136.5:ENST00000416457.5:ENST00000455381.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	32	2	2.2957	2.40531	2.51492	0.0516458	0.0329839	0.176696	0.133816
chr3	185759198	185759298	1885690	0	-	0.41	(0.408,0.44]	chr3	188573	605	INTRON	INTRON	IGF2BP2	ENSG00000073792.16	ENST00000382199.7:ENST00000346192.7:ENST00000457616.6:ENST00000421047.3:ENST00000461957.5:ENST00000493302.5:ENST00000466476.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	32	2	2.2957	2.40531	2.51492	0.0516458	0.0329839	0.176696	0.133816
chr6	157414849	157414949	3011879	0	+	0.41	(0.408,0.44]	chr6	281268	322	INTRON	INTRON	ZDHHC14	ENSG00000175048.17	ENST00000414563.6:ENST00000359775.10	protein_coding	protein_coding	protein_coding	protein_coding	2	32	2	2.2957	2.40531	2.51492	0.0516458	0.0329839	0.176696	0.133816
chr1	21762178	21762278	396660	0	-	0.54	(0.515,0.57]	chr1	47345	40	INTRON	INTRON	USP48	ENSG00000090686.16	ENST00000400301.5:ENST00000308271.14:ENST00000529637.5:ENST00000421625.6:ENST00000527823.5:ENST00000532737.1:ENST00000489108.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	116	2	2.15866	2.4052749999999996	2.65189	0.0100547	5.42016e-5	0.0848452	0.00603408
chr16	69376629	69376728	6508107	0	-	0.444444	(0.44,0.476]	chr16	630123	39	INTRON	INTRON	TERF2	ENSG00000132604.11	ENST00000254942.8:ENST00000566750.5:ENST00000569542.6:ENST00000566257.5:ENST00000569611.6:ENST00000567296.6:ENST00000569280.1:ENST00000567841.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	51	2	1.49942	2.40526	3.3111	0.0792118	0.0020006	0.199574	0.0412555
chr6	159989683	159989783	3023174	0	+	0.45	(0.44,0.476]	chr6	282013	199	INTRON	INTRON	IGF2R	ENSG00000197081.16	ENST00000676781.1:ENST00000677704.1:ENST00000356956.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	51	2	1.49942	2.40526	3.3111	0.0792118	0.0020006	0.199574	0.0412555
chr5	134381407	134381507	2488677	0	+	0.41	(0.408,0.44]	chr5	237597	2	INTRON	INTRON	UBE2B	ENSG00000119048.9	ENST00000507277.2:ENST00000510021.5:ENST00000511807.1:ENST00000265339.7:ENST00000506787.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	120	2	2.23023	2.4052	2.58017	0.0087201	1.84532e-4	0.0788605	0.0118345
chr21	31710542	31710642	7437615	0	-	0.3	(0.28,0.32]	chr21	758689	38	INTRON	INTRON	SCAF4	ENSG00000156304.15	ENST00000286835.12:ENST00000399804.5:ENST00000434667.3:ENST00000485790.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	111	2	2.15291	2.40512	2.65733	0.0061571	0.00374651	0.0676501	0.0562379
chr7	100199453	100199540	3364070	0	+	0.528736	(0.515,0.57]	chr7	314519	2	EXON_MRNA	EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	STAG3	ENSG00000066923.18	ENST00000426455.5:ENST00000394018.6:ENST00000317296.9:ENST00000615138.5:ENST00000620100.5:ENST00000496157.5:ENST00000412190.6:ENST00000491498.5:ENST00000440830.5:ENST00000477469.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	80	2	2.20043	2.405105	2.60978	0.00392045	0.00151689	0.0570863	0.0352794
chr4	128090000	128090100	2042886	0	+	0.45	(0.44,0.476]	chr4	202868	73	INTRON	INTRON	LARP1B	ENSG00000138709.19	ENST00000512292.5:ENST00000326639.11:ENST00000508819.5:ENST00000394288.7:ENST00000432347.6:ENST00000649983.1:ENST00000650359.1:ENST00000648358.1:ENST00000507377.1	protein_coding	protein_coding	protein_coding	protein_coding	5	70	2	2.13779	2.40503	2.67227	0.0264596	0.0010793	0.122506	0.0300133
chr17	6902105	6902205	6717224	0	-	0.53	(0.515,0.57]	chr17	658643	204	INTRON	INTRON	ALOX12-AS1	ENSG00000215067.11	ENST00000653385.1:ENST00000659418.1:ENST00000572385.5:ENST00000570562.5:ENST00000575889.5	lncRNA	lncRNA	lncRNA	lncRNA	9	87	2	1.55764	2.40488	3.25212	0.0183076	2.5577e-4	0.11576	0.0148225
chr11	5452202	5452302	4897743	0	-	0.59	(0.57,1]	chr11	459193	108	INTRON	INTRON	HBG2:ENSG00000239920:HBE1:OR51B5	ENSG00000196565.15:ENSG00000239920.2:ENSG00000213931.7:ENSG00000167355.8	ENST00000380252.6:ENST00000380259.7:ENST00000292896.3:ENST00000380237.5:ENST00000420726.6:ENST00000420465.6:ENST00000415970.6:ENST00000418729.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:nonsense_mediated_decay:processed_transcript	9	53	2	1.60054	2.404855	3.20917	0.0155045	2.02775e-4	0.109094	0.0129814
chr12	116176844	116176942	5424538	0	-	0.306122	(0.28,0.32]	chr12	518267	16	INTRON	INTRON	MED13L:ENSG00000258337	ENSG00000123066.9:ENSG00000258337.1	ENST00000281928.9:ENST00000650226.1:ENST00000548743.2:ENST00000647567.1:ENST00000551197.2:ENST00000549373.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	7	124	2	1.64082	2.40483	3.16884	0.0422774	1.20164e-4	0.148082	0.00938389
chr19	46779704	46779803	7195331	0	-	0.525253	(0.515,0.57]	chr19	728984	4	INTRON	INTRON	SLC1A5	ENSG00000105281.12	ENST00000542575.6:ENST00000594991.5:ENST00000434726.6:ENST00000412532.6:ENST00000593713.1	protein_coding	protein_coding	protein_coding	protein_coding	5	58	2	2.27116	2.404805	2.53845	0.00632226	0.00601759	0.0700813	0.0687526
chr18	705672	705771	6939709	0	-	0.454545	(0.44,0.476]	chr18	686437	80	INTRON	INTRON	ENOSF1	ENSG00000132199.20	ENST00000647584.2:ENST00000383578.7:ENST00000340116.12:ENST00000581475.5:ENST00000580982.5:ENST00000585128.6:ENST00000584453.5:ENST00000578651.5:ENST00000585004.5:ENST00000579053.5:ENST00000583771.1:ENST00000580605.5:ENST00000581332.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	95	2	1.65316	2.404775	3.15639	0.0192752	3.93757e-4	0.108861	0.0178567
chr1	23332817	23332917	399473	0	-	0.48	(0.476,0.515]	chr1	47865	87	INTRON	INTRON	HNRNPR	ENSG00000125944.21	ENST00000478691.5:ENST00000302271.11:ENST00000374616.7:ENST00000374612.5:ENST00000675048.1:ENST00000606561.5:ENST00000427764.3:ENST00000463552.5:ENST00000470941.5:ENST00000476451.2	protein_coding	protein_coding	protein_coding	protein_coding	26	308	2	2.1113	2.404705	2.69811	1.93798e-4	6.19635e-5	0.0121696	0.00695519
chr12	46363145	46363245	5316596	0	-	0.36	(0.35,0.378]	chr12	505777	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SLC38A2	ENSG00000134294.14	ENST00000256689.10:ENST00000549258.5:ENST00000551374.5:ENST00000612232.1:ENST00000548111.5:ENST00000548236.5:ENST00000552414.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	46	2	1.81767	2.4047	2.99173	0.0640429	0.00713365	0.177882	0.0756118
chr16	84721702	84721801	6410120	0	+	0.535354	(0.515,0.57]	chr16	615272	48	INTRON	INTRON	USP10	ENSG00000103194.16	ENST00000562743.5:ENST00000540269.6:ENST00000563892.5:ENST00000562092.1:ENST00000569511.5:ENST00000219473.12:ENST00000570191.5:ENST00000563048.5:ENST00000562283.5:ENST00000563386.5:ENST00000569038.5:ENST00000570053.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	10	104	2	1.88214	2.4047	2.92726	0.00447641	3.10919e-4	0.0610799	0.0162055
chr7	50341134	50341234	3317069	0	+	0.48	(0.476,0.515]	chr7	308261	123	INTRON	INTRON	IKZF1	ENSG00000185811.20	ENST00000642219.1:ENST00000645066.1:ENST00000646110.1:ENST00000331340.8:ENST00000413698.5:ENST00000349824.8:ENST00000343574.9:ENST00000357364.8:ENST00000440768.6:ENST00000346667.8:ENST00000615491.4:ENST00000359197.9:ENST00000439701.2:ENST00000438033.5:ENST00000492782.6:ENST00000462201.1:ENST00000471793.1:ENST00000426121.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	52	2	1.93059	2.40469	2.87879	0.023762	0.00999149	0.118822	0.0879541
chr22	19108253	19108353	7551873	0	-	0.43	(0.408,0.44]	chr22	771903	184	INTRON	INTRON	DGCR2	ENSG00000070413.20	ENST00000537045.5:ENST00000545799.5:ENST00000263196.12:ENST00000389262.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	66	2	1.39614	2.4046849999999997	3.41323	0.0567929	0.00129989	0.167723	0.0333764
chr12	132827713	132827807	5450215	0	-	0.404255	(0.378,0.408]	chr12	522125	1	SSB_ADJ	SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GOLGA3:CHFR	ENSG00000090615.16:ENSG00000072609.18	ENST00000204726.9:ENST00000450791.8:ENST00000688114.1:ENST00000691696.1:ENST00000691636.1:ENST00000690897.1:ENST00000456883.7:ENST00000545875.4:ENST00000688251.1:ENST00000686751.1:ENST00000685580.1:ENST00000687165.1:ENST00000692384.1:ENST00000685120.1:ENST00000689813.1:ENST00000693112.1:ENST00000685450.1:ENST00000534967.2:ENST00000537317.2:ENST00000541341.5:ENST00000692289.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	124	2	1.97577	2.404675	2.83358	0.00823929	1.78662e-4	0.0773252	0.0116621
chr3	12577041	12577141	1368085	0	+	0.52	(0.515,0.57]	chr3	144100	3	SS5_PROX	SS5_PROX:INTRON	MKRN2	ENSG00000075975.17	ENST00000677816.1:ENST00000677941.1:ENST00000676544.1:ENST00000677237.1:ENST00000679143.1:ENST00000676701.1:ENST00000170447.12:ENST00000411987.5:ENST00000448482.1:ENST00000677142.1:ENST00000676541.1:ENST00000677798.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	82	2	2.11384	2.40463	2.69542	0.0118599	3.15632e-4	0.0899583	0.0159645
chr1	171497597	171497697	253335	0	+	0.47	(0.44,0.476]	chr1	30096	115	INTRON	INTRON	PRRC2C	ENSG00000117523.18	ENST00000647382.2:ENST00000367742.7:ENST00000476522.5:ENST00000338920.8:ENST00000467601.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	87	2	2.17407	2.404575	2.63508	0.00501007	0.00272014	0.0618077	0.0481508
chr1	45614512	45614600	93523	0	+	0.477273	(0.476,0.515]	chr1	12629	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NASP	ENSG00000132780.17	ENST00000437901.6:ENST00000537798.5:ENST00000437362.6:ENST00000350030.8:ENST00000527359.5:ENST00000453748.5:ENST00000528238.5:ENST00000372052.8:ENST00000351223.7:ENST00000530073.5:ENST00000481782.1:ENST00000531612.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	93	2	1.99699	2.404565	2.81214	0.0110277	5.41922e-4	0.0873897	0.0211086
chr12	91494017	91494117	5384156	0	-	0.38	(0.378,0.408]	chr12	513479	943	INTRON	INTRON	ENSG00000289605	ENSG00000289605.1	ENST00000685093.1	lncRNA	lncRNA	lncRNA	lncRNA	6	85	2	2.27309	2.404555	2.53602	0.00769587	0.0020933	0.0754631	0.0424943
chr2	15530643	15530743	1072855	0	-	0.34	(0.32,0.35]	chr2	114441	189	INTRON	INTRON	NBAS	ENSG00000151779.13	ENST00000281513.10	protein_coding	protein_coding	protein_coding	protein_coding	14	157	2	1.62297	2.40454	3.18611	0.00711353	6.68157e-4	0.0756118	0.0235847
chr11	43360509	43360609	4776559	0	+	0.42	(0.408,0.44]	chr11	441679	10	INTRON	INTRON	TTC17	ENSG00000052841.15	ENST00000039989.9:ENST00000299240.10:ENST00000534347.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	58	2	1.7519	2.4044749999999997	3.05705	0.0239555	0.00658331	0.129259	0.0701901
chr5	43131109	43131208	2349129	0	+	0.525253	(0.515,0.57]	chr5	226661	62	INTRON	INTRON	ZNF131	ENSG00000172262.12	ENST00000515326.5:ENST00000682664.1:ENST00000510026.5:ENST00000504359.1:ENST00000509156.5:ENST00000508259.5:ENST00000507218.5:ENST00000306938.8:ENST00000505606.6:ENST00000509634.5:ENST00000509341.5:ENST00000511736.5:ENST00000509931.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	10	94	2	1.88847	2.4044600000000003	2.92045	0.00323821	0.00128922	0.0524329	0.0328334
chr1	150387711	150387811	221932	0	+	0.5	(0.476,0.515]	chr1	25051	224	INTRON	INTRON	RPRD2	ENSG00000163125.16	ENST00000492220.1:ENST00000369068.5:ENST00000401000.8:ENST00000369067.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	42	2	1.79693	2.4044499999999998	3.01197	0.0649782	0.00633162	0.179417	0.0722266
chr11	46590824	46590924	4947228	0	-	0.49	(0.476,0.515]	chr11	463526	3	SS5_PROX	SS5_PROX:INTRON	AMBRA1	ENSG00000110497.15	ENST00000683756.1:ENST00000534300.5:ENST00000533727.5:ENST00000314845.7:ENST00000458649.6:ENST00000528950.1:ENST00000531542.1:ENST00000526606.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	42	2	1.79693	2.4044499999999998	3.01197	0.0649782	0.00633162	0.179417	0.0722266
chr2	107729146	107729246	1205841	0	-	0.3	(0.28,0.32]	chr2	128532	115	INTRON	INTRON	LINC01885:ENSG00000286769	ENSG00000237880.2:ENSG00000286769.1	ENST00000654481.1:ENST00000669817.1	lncRNA	lncRNA	lncRNA	lncRNA	12	201	2	2.20536	2.404445	2.60353	0.00137274	8.05663e-4	0.0340241	0.0263213
chr17	29408300	29408400	6585815	0	+	0.56	(0.515,0.57]	chr17	640377	43	INTRON	INTRON	TAOK1	ENSG00000160551.12	ENST00000261716.8:ENST00000583121.5:ENST00000587277.1:ENST00000536202.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	37	2	2.15051	2.404425	2.65834	0.0238113	0.0187418	0.118889	0.117523
chr2	233360269	233360368	1039883	0	+	0.555556	(0.515,0.57]	chr2	110978	52	INTRON	INTRON	DGKD	ENSG00000077044.11	ENST00000264057.7:ENST00000427930.5:ENST00000442524.4	protein_coding	protein_coding	protein_coding	protein_coding	3	37	2	2.15051	2.404425	2.65834	0.0238113	0.0187418	0.118889	0.117523
chr20	32235860	32235960	7255195	0	+	0.53	(0.515,0.57]	chr20	736980	13	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	POFUT1	ENSG00000101346.14	ENST00000375749.8:ENST00000434904.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	37	2	2.15051	2.404425	2.65834	0.0238113	0.0187418	0.118889	0.117523
chr5	97022099	97022199	2435699	0	+	0.54	(0.515,0.57]	chr5	234052	4	SS3_PROX	SS3_PROX:INTRON	LNPEP	ENSG00000113441.16	ENST00000231368.10:ENST00000395770.3	protein_coding	protein_coding	protein_coding	protein_coding	3	37	2	2.15051	2.404425	2.65834	0.0238113	0.0187418	0.118889	0.117523
chr2	70233413	70233512	1152315	0	-	0.464646	(0.44,0.476]	chr2	123102	22	INTRON	INTRON	C2orf42:TIA1	ENSG00000115998.8:ENSG00000116001.17	ENST00000470096.1:ENST00000415783.6:ENST00000433529.7:ENST00000282574.8:ENST00000445587.5:ENST00000416149.6:ENST00000474809.6:ENST00000477044.6:ENST00000361692.4:ENST00000496452.5:ENST00000481650.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	42	2	2.00609	2.40442	2.80275	0.0360127	0.0146513	0.152355	0.0982604
chr21	45119216	45119314	7418301	0	+	0.459184	(0.44,0.476]	chr21	756274	2	INTRON	INTRON	ADARB1	ENSG00000197381.17	ENST00000462214.5:ENST00000460734.5:ENST00000348831.9:ENST00000389861.7:ENST00000389863.8:ENST00000492414.5:ENST00000496664.5:ENST00000437626.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	42	2	2.00609	2.40442	2.80275	0.0360127	0.0146513	0.152355	0.0982604
chr1	44913095	44913194	437050	0	-	0.252525	[0,0.28]	chr1	52932	153	INTRON	INTRON	EIF2B3	ENSG00000070785.17	ENST00000620860.4:ENST00000360403.7:ENST00000439363.5:ENST00000372183.7	protein_coding	protein_coding	protein_coding	protein_coding	2	45	2	2.36637	2.404395	2.44242	0.0500615	0.0491024	0.17488	0.155269
chr5	69581677	69581771	2381612	0	+	0.212766	[0,0.28]	chr5	229513	15	INTRON	INTRON	GTF2H2C	ENSG00000183474.16	ENST00000380729.8:ENST00000506129.5:ENST00000510979.5:ENST00000514162.5:ENST00000446221.6:ENST00000507595.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	45	2	2.36637	2.404395	2.44242	0.0500615	0.0491024	0.17488	0.155269
chr9	124667807	124667907	4348180	0	-	0.24	[0,0.28]	chr9	399255	721	INTRON	INTRON	NR6A1	ENSG00000148200.17	ENST00000487099.7:ENST00000373584.7:ENST00000416460.6:ENST00000344523.8	protein_coding	protein_coding	protein_coding	protein_coding	2	45	2	2.36637	2.404395	2.44242	0.0500615	0.0491024	0.17488	0.155269
chr14	31206715	31206815	5859007	0	-	0.43	(0.408,0.44]	chr14	556737	3	SS5_PROX	SS5_PROX:INTRON	HECTD1	ENSG00000092148.14	ENST00000399332.6:ENST00000553700.5:ENST00000693685.1:ENST00000692835.1:ENST00000554882.6:ENST00000611816.5:ENST00000688933.1:ENST00000691390.1:ENST00000553957.6:ENST00000687002.1:ENST00000554471.3:ENST00000556224.6:ENST00000556474.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	58	2	1.6546400000000001	2.4043900000000002	3.15414	0.0329965	0.00469847	0.145298	0.0600108
chr14	101968336	101968435	5820258	0	+	0.525253	(0.515,0.57]	chr14	551975	30	INTRON	INTRON	DYNC1H1	ENSG00000197102.14	ENST00000360184.10:ENST00000684561.1:ENST00000680313.1:ENST00000679720.1:ENST00000680715.1:ENST00000681283.1:ENST00000681822.1:ENST00000679910.1:ENST00000681574.1:ENST00000645039.2:ENST00000645149.2:ENST00000680200.1:ENST00000680120.1:ENST00000644881.2:ENST00000681066.1:ENST00000680423.1:ENST00000681536.1:ENST00000679486.1:ENST00000681010.1:ENST00000679629.1:ENST00000681123.1:ENST00000680874.1:ENST00000680137.1:ENST00000643508.2:ENST00000680808.1:ENST00000681311.1:ENST00000681859.1:ENST00000643684.1:ENST00000643958.2:ENST00000680001.1:ENST00000681668.1:ENST00000645114.2:ENST00000681751.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	59	2	2.00468	2.40434	2.804	0.0166344	0.00215855	0.110511	0.0417866
chr15	40177173	40177272	6001411	0	+	0.292929	(0.28,0.32]	chr15	570603	1	INTRON	INTRON	BUB1B	ENSG00000156970.13	ENST00000412359.7:ENST00000287598.11	protein_coding	protein_coding	protein_coding	protein_coding	4	64	2	1.76378	2.404315	3.04485	0.0395495	0.00894006	0.161534	0.0799922
chr21	43102922	43103022	7468297	0	-	0.48	(0.476,0.515]	chr21	761118	16	EXON_MRNA	EXON_MRNA:INTRON	U2AF1	ENSG00000160201.12	ENST00000291552.9:ENST00000380276.6:ENST00000464750.5:ENST00000475639.5:ENST00000459639.5:ENST00000486519.5:ENST00000463599.5:ENST00000496462.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	42	2	1.92984	2.404315	2.87879	0.0466474	0.00999149	0.151522	0.0879541
chr7	2218735	2218831	3466797	0	-	0.479167	(0.476,0.515]	chr7	324098	3	INTRON	INTRON	MAD1L1	ENSG00000002822.16	ENST00000406869.5:ENST00000399654.6:ENST00000402746.5:ENST00000265854.12:ENST00000445959.5:ENST00000429625.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	42	2	1.92984	2.404315	2.87879	0.0466474	0.00999149	0.151522	0.0879541
chr9	131412724	131412824	4217156	0	+	0.29	(0.28,0.32]	chr9	386720	181	INTRON	INTRON	PRRC2B	ENSG00000288701.1	ENST00000682525.1:ENST00000684596.1:ENST00000683519.1:ENST00000682501.1	protein_coding	protein_coding	protein_coding	protein_coding	9	146	2	1.65802	2.40421	3.1504	0.0234847	1.32696e-4	0.118716	0.00992715
chr8	97691986	97692086	3809542	0	+	0.47	(0.44,0.476]	chr8	352866	4	INTRON	INTRON	MTDH	ENSG00000147649.10	ENST00000336273.8:ENST00000519934.5:ENST00000519293.1:ENST00000521933.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	53	2	1.98938	2.40417	2.81896	0.0198602	0.0120766	0.109608	0.0962311
chr2	108748138	108748232	847705	0	+	0.319149	(0.28,0.32]	chr2	94827	10	INTRON	INTRON	RANBP2	ENSG00000153201.16	ENST00000283195.11	protein_coding	protein_coding	protein_coding	protein_coding	8	133	2	2.24209	2.404055	2.56602	0.00326427	0.0025277	0.0508595	0.0465056
chr17	43289390	43289490	6777082	0	-	0.46	(0.44,0.476]	chr17	667946	162	INTRON	INTRON	CCDC200	ENSG00000236383.9	ENST00000594691.6:ENST00000615433.2	protein_coding	protein_coding	protein_coding	protein_coding	5	68	2	2.07016	2.403985	2.73781	0.0151815	0.00276493	0.0994339	0.04867
chr1	113727769	113727869	525106	0	-	0.54	(0.515,0.57]	chr1	61795	8	INTRON	INTRON	PHTF1	ENSG00000116793.16	ENST00000369604.6:ENST00000393357.6:ENST00000369600.5:ENST00000369598.5:ENST00000357783.6:ENST00000472612.5:ENST00000486855.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	58	2	2.22166	2.40395	2.58624	0.00735516	0.00526399	0.0765982	0.0633874
chr10	58392958	58393057	4435699	0	+	0.555556	(0.515,0.57]	chr10	409149	17	INTRON	INTRON	TFAM	ENSG00000108064.11	ENST00000373899.3:ENST00000487519.6:ENST00000373895.7:ENST00000395377.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	58	2	2.22166	2.40395	2.58624	0.00735516	0.00526399	0.0765982	0.0633874
chr17	49047664	49047763	6625130	0	+	0.40404	(0.378,0.408]	chr17	646677	9	INTRON	INTRON	IGF2BP1	ENSG00000159217.10	ENST00000290341.8:ENST00000431824.2	protein_coding	protein_coding	protein_coding	protein_coding	24	307	2	1.88565	2.403875	2.9221	9.86516e-4	2.07961e-5	0.028861499999999998	0.00371585
chr19	28497946	28498045	7166074	0	-	0.434343	(0.408,0.44]	chr19	724189	297	INTRON	INTRON	ENSG00000283403:ENSG00000267243	ENSG00000283403.1:ENSG00000267243.6	ENST00000592347.5:ENST00000593065.5	lncRNA	lncRNA	lncRNA	lncRNA	15	186	2	1.77664	2.40381	3.03098	0.0053106	2.13102e-5	0.0638483	0.00357642
chr19	10176406	10176502	7134682	0	-	0.385417	(0.378,0.408]	chr19	719220	4	INTRON	INTRON	DNMT1	ENSG00000130816.17	ENST00000340748.8:ENST00000359526.9:ENST00000592705.5:ENST00000679103.1:ENST00000677634.1:ENST00000676820.1:ENST00000677250.1:ENST00000677013.1:ENST00000677685.1:ENST00000677616.1:ENST00000676604.1:ENST00000678024.1:ENST00000676610.1:ENST00000678804.1:ENST00000679313.1:ENST00000677946.1:ENST00000586988.5:ENST00000588952.5:ENST00000588118.5:ENST00000592342.5:ENST00000592054.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	55	2	1.94906	2.4038	2.85854	0.023282	0.0107837	0.118176	0.0920575
chr7	152402546	152402646	3680959	0	-	0.32	(0.28,0.32]	chr7	341660	435	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000682301.1:ENST00000452749.2:ENST00000680867.1:ENST00000683800.1:ENST00000684278.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	105	2	2.06157	2.40379	2.74601	0.0189458	0.00100442	0.108861	0.0292217
chr4	88727243	88727342	2199631	0	-	0.444444	(0.44,0.476]	chr4	215853	14	UTR3	UTR3:EXON_MRNA	FAM13A	ENSG00000138640.15	ENST00000395002.6:ENST00000264344.10:ENST00000511573.5:ENST00000509478.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	59	2	1.60467	2.403785	3.2029	0.0411383	0.00308681	0.1451	0.0510391
chr1	25452480	25452578	48165	0	+	0.306122	(0.28,0.32]	chr1	5931	32	INTRON	INTRON	MACO1	ENSG00000204178.11	ENST00000399766.7:ENST00000374343.5:ENST00000647928.1:ENST00000470035.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	73	2	1.72287	2.403745	3.08462	0.0286502	0.0078976	0.139456	0.076155
chr12	45959266	45959365	5315304	0	-	0.282828	(0.28,0.32]	chr12	505618	27	INTRON	INTRON	SCAF11	ENSG00000139218.18	ENST00000369367.8:ENST00000547018.5:ENST00000266589.10:ENST00000395454.6	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay	5	73	2	1.72287	2.403745	3.08462	0.0286502	0.0078976	0.139456	0.076155
chr7	131106642	131106717	3642668	0	-	0.413333	(0.408,0.44]	chr7	338771	1	SSB_ADJ	SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	LINC-PINT	ENSG00000231721.7	ENST00000647388.1:ENST00000423414.5:ENST00000433079.5:ENST00000642156.1:ENST00000451786.5:ENST00000645248.1:ENST00000644804.1:ENST00000647288.1:ENST00000643135.1:ENST00000643874.1:ENST00000644188.1:ENST00000431189.1:ENST00000642483.1:ENST00000429901.2	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	3	43	2	2.36073	2.403735	2.44674	0.0481658	0.00868283	0.153019	0.0842798
chr6	150979446	150979546	2999019	0	+	0.39	(0.378,0.408]	chr6	280593	70	INTRON	INTRON	MTHFD1L	ENSG00000120254.16	ENST00000611279.4:ENST00000367321.8:ENST00000618312.4:ENST00000478643.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	106	2	1.91219	2.403685	2.89518	0.00434774	0.00190046	0.0602259	0.0393643
chr1	23331719	23331819	399462	0	-	0.59	(0.57,1]	chr1	47865	76	INTRON	INTRON	HNRNPR	ENSG00000125944.21	ENST00000478691.5:ENST00000302271.11:ENST00000374616.7:ENST00000374612.5:ENST00000675048.1:ENST00000606561.5:ENST00000427764.3:ENST00000463552.5:ENST00000470941.5:ENST00000476451.2	protein_coding	protein_coding	protein_coding	protein_coding	5	31	2	1.62421	2.4036049999999998	3.183	0.0376752	0.00254356	0.156361	0.0448135
chr1	46260360	46260441	96333	0	+	0.382716	(0.378,0.408]	chr1	12890	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RAD54L	ENSG00000085999.13	ENST00000463715.5:ENST00000442598.5:ENST00000671528.1:ENST00000493985.5:ENST00000669994.1:ENST00000371975.9:ENST00000469835.6:ENST00000655446.1:ENST00000657122.1:ENST00000487700.1:ENST00000493032.5:ENST00000472889.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	53	2	1.65821	2.403565	3.14892	0.0506302	0.00499984	0.17547	0.0617433
chr20	17960542	17960639	7320486	0	-	0.453608	(0.44,0.476]	chr20	745328	32	INTRON	INTRON	SNX5	ENSG00000089006.17	ENST00000377768.7:ENST00000490175.5:ENST00000483485.5:ENST00000377759.9:ENST00000431277.5:ENST00000419004.2:ENST00000474883.5:ENST00000475716.5:ENST00000469704.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	58	2	2.21079	2.403555	2.59632	0.0194581	0.00579248	0.119831	0.0662959
chr15	43797601	43797699	6012551	0	+	0.602041	(0.57,1]	chr15	572720	16	UTR5	UTR5:EXON_MRNA:INTRON	SERF2:HYPK	ENSG00000140264.21:ENSG00000242028.8	ENST00000630046.2:ENST00000409646.5:ENST00000409291.5:ENST00000409617.6:ENST00000448830.2:ENST00000430901.1:ENST00000406925.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	30	2	2.23711	2.4035349999999998	2.56996	0.0172108	0.00499145	0.104099	0.0646039
chr3	160436684	160436783	1849735	0	-	0.646465	(0.57,1]	chr3	186017	9	UTR3	UTR3:EXON_MRNA:INTRON	ENSG00000248710:TRIM59	ENSG00000248710.1:ENSG00000213186.8	ENST00000483754.1:ENST00000543469.1:ENST00000309784.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	30	2	2.23711	2.4035349999999998	2.56996	0.0172108	0.00499145	0.104099	0.0646039
chr18	1350220	1350319	6941682	0	-	0.353535	(0.35,0.378]	chr18	686583	2	INTRON	INTRON	LINC00470	ENSG00000132204.14	ENST00000657423.1:ENST00000657618.1:ENST00000584090.5:ENST00000660947.1:ENST00000669242.1:ENST00000660475.1:ENST00000653775.1:ENST00000661931.1:ENST00000412816.7:ENST00000577867.5:ENST00000584492.5:ENST00000667416.1:ENST00000661852.1:ENST00000657919.1:ENST00000661646.1:ENST00000667776.1:ENST00000654559.1:ENST00000661233.1:ENST00000653213.1:ENST00000659094.1:ENST00000660964.1:ENST00000577403.6:ENST00000660358.1:ENST00000669153.1:ENST00000657121.1:ENST00000655957.1:ENST00000659289.1:ENST00000665133.1:ENST00000671558.1:ENST00000666542.1:ENST00000663512.1:ENST00000582862.6:ENST00000578835.5:ENST00000669312.1:ENST00000581430.5:ENST00000581212.1:ENST00000658090.1:ENST00000667225.1	lncRNA	lncRNA	lncRNA	lncRNA	8	104	2	1.6344	2.40352	3.17264	0.0189573	6.16722e-4	0.118501	0.0229036
chr4	150730661	150730761	2268882	0	-	0.37	(0.35,0.378]	chr4	220726	466	INTRON	INTRON	LRBA	ENSG00000198589.14	ENST00000357115.9:ENST00000651943.2:ENST00000510413.5:ENST00000509835.5:ENST00000651695.1:ENST00000651035.1:ENST00000507224.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	48	2	2.23651	2.4035	2.57049	0.0262669	0.020879	0.133676	0.111766
chr14	96866999	96867098	5811576	0	+	0.363636	(0.35,0.378]	chr14	551089	22	EXON_MRNA	EXON_MRNA:INTRON	VRK1	ENSG00000100749.9	ENST00000553683.2:ENST00000680538.1:ENST00000681195.1:ENST00000681524.1:ENST00000680084.1:ENST00000679533.1:ENST00000681598.1:ENST00000679727.1:ENST00000679758.1:ENST00000679977.1:ENST00000680387.1:ENST00000680335.1:ENST00000680683.1:ENST00000681474.1:ENST00000216639.8:ENST00000681363.1:ENST00000681538.1:ENST00000680922.1:ENST00000679903.1:ENST00000681101.1:ENST00000681419.1:ENST00000679941.1:ENST00000680849.1:ENST00000679770.1:ENST00000681493.1:ENST00000681778.1:ENST00000680993.1:ENST00000681355.1:ENST00000681695.1:ENST00000681344.1:ENST00000680007.1:ENST00000679918.1:ENST00000679816.1:ENST00000680756.1:ENST00000681249.1:ENST00000680526.1:ENST00000679365.1:ENST00000680851.1:ENST00000679506.1:ENST00000679650.1:ENST00000679462.1:ENST00000680724.1:ENST00000681061.1:ENST00000681677.1:ENST00000679843.1:ENST00000555067.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	46	2	1.75561	2.403485	3.05136	0.0739399	0.00578894	0.190914	0.0684334
chr1	6623631	6623730	5518	0	+	0.414141	(0.408,0.44]	chr1	1079	21	UTR3	UTR3:EXON_MRNA	PHF13	ENSG00000116273.6	ENST00000377648.5	protein_coding	protein_coding	protein_coding	protein_coding	6	79	2	1.8865	2.403415	2.92033	0.0148842	0.00162151	0.107116	0.0367655
chr20	38003372	38003469	7341020	0	-	0.350515	(0.35,0.378]	chr20	748175	2	INTRON	INTRON	TTI1	ENSG00000101407.13	ENST00000373448.6:ENST00000373447.8:ENST00000449821.1	protein_coding	protein_coding	protein_coding	protein_coding	3	46	2	1.87717	2.403345	2.92952	0.0555068	0.00881187	0.165463	0.084878
chr1	47335715	47335815	97593	0	+	0.33	(0.32,0.35]	chr1	13138	12	INTRON	INTRON	CMPK1	ENSG00000162368.14	ENST00000371873.10:ENST00000371871.8:ENST00000471289.2:ENST00000450808.2:ENST00000371870.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	66	2	2.30731	2.4032999999999998	2.49929	0.0176772	0.00776612	0.10525	0.0787356
chr17	60286128	60286228	6804809	0	-	0.33	(0.32,0.35]	chr17	672336	143	INTRON	INTRON	USP32	ENSG00000170832.13	ENST00000300896.9:ENST00000590133.5:ENST00000589335.5:ENST00000393003.7	protein_coding	protein_coding	protein_coding	protein_coding	4	66	2	2.30731	2.4032999999999998	2.49929	0.0176772	0.00776612	0.10525	0.0787356
chr2	107695939	107696039	1205507	0	-	0.42	(0.408,0.44]	chr2	128516	448	INTRON	INTRON	LINC01885	ENSG00000237880.2	ENST00000654481.1	lncRNA	lncRNA	lncRNA	lncRNA	7	95	2	2.15894	2.403265	2.64759	0.00504142	0.0016061	0.0646039	0.0364977
chr2	181030513	181030613	936471	0	+	0.24	[0,0.28]	chr2	102627	406	INTRON	INTRON	UBE2E3	ENSG00000170035.16	ENST00000602303.5:ENST00000602959.5:ENST00000602479.5:ENST00000392415.6:ENST00000602291.5:ENST00000410062.9:ENST00000602499.5:ENST00000602710.5:ENST00000602762.5:ENST00000602888.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	73	2	2.02929	2.403225	2.77716	0.022039	0.0189138	0.118303	0.115395
chr9	128331668	128331765	4204134	0	+	0.381443	(0.378,0.408]	chr9	384235	14	EXON_LNCRNA	EXON_LNCRNA:SS3_PROX:INTRON	COQ4	ENSG00000167113.11	ENST00000300452.8:ENST00000461102.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	153	2	2.17179	2.403205	2.63462	0.00178023	4.21248e-4	0.039274	0.0189827
chr20	50920177	50920277	7355766	0	-	0.49	(0.476,0.515]	chr20	750105	10	INTRON	INTRON	ADNP	ENSG00000101126.18	ENST00000621696.5:ENST00000673732.1:ENST00000396029.8:ENST00000644386.1:ENST00000396032.8:ENST00000645081.1:ENST00000642364.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	15	194	2	2.29913	2.4032	2.50727	5.99718e-4	1.78431e-4	0.0226059	0.0116619
chr14	103686721	103686819	5828239	0	+	0.357143	(0.35,0.378]	chr14	553126	12	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	KLC1	ENSG00000126214.22	ENST00000348520.10:ENST00000334553.11:ENST00000389744.8:ENST00000555836.5:ENST00000347839.10:ENST00000452929.6:ENST00000554280.5:ENST00000557450.5:ENST00000554228.5:ENST00000634686.1:ENST00000246489.11:ENST00000537046.6:ENST00000535194.2:ENST00000538504.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	95	2	2.17486	2.403195	2.63153	0.00562761	0.00289708	0.0653997	0.0494641
chr2	38358342	38358442	1099156	0	-	0.36	(0.35,0.378]	chr2	117870	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ATL2	ENSG00000119787.14	ENST00000378954.9:ENST00000406122.5:ENST00000405384.6:ENST00000402054.5:ENST00000419554.6:ENST00000651368.1:ENST00000452935.6:ENST00000449130.5:ENST00000443098.5:ENST00000456736.5:ENST00000472097.1:ENST00000451483.1:ENST00000486927.1:ENST00000416222.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	55	2	2.02424	2.40318	2.78212	0.0168532	0.0164934	0.110301	0.103549
chr7	111295291	111295391	3621435	0	-	0.36	(0.35,0.378]	chr7	337093	3314	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	55	2	2.02424	2.40318	2.78212	0.0168532	0.0164934	0.110301	0.103549
chr1	70215039	70215138	142523	0	+	0.50505	(0.476,0.515]	chr1	15965	89	INTRON	INTRON	SRSF11	ENSG00000116754.14	ENST00000370951.5:ENST00000463877.1:ENST00000687381.1:ENST00000370950.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	64	2	1.65426	2.40314	3.15202	0.0231344	0.00455841	0.126939	0.0595107
chrX	121211530	121211630	7715305	0	+	0.37	(0.35,0.378]	chrX	789390	253	INTRON	INTRON	ENSG00000286163	ENSG00000286163.1	ENST00000651788.1	lncRNA	lncRNA	lncRNA	lncRNA	10	134	2	1.59887	2.403075	3.20728	0.0202563	6.89387e-5	0.110054	0.00688351
chr12	71785871	71785971	5169043	0	+	0.37	(0.35,0.378]	chr12	489680	3	UTR3	UTR3:EXON_MRNA	RAB21	ENSG00000080371.6	ENST00000261263.5:ENST00000358546.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	14	200	2	2.15614	2.40307	2.65	0.00208752	8.63441e-5	0.0411885	0.00783027
chr16	89459682	89459782	6543293	0	-	0.5	(0.476,0.515]	chr16	634281	280	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	65	2	1.80755	2.403035	2.99852	0.0131326	0.0077575	0.0999551	0.0757402
chr16	89800429	89800526	6544655	0	-	0.391753	(0.378,0.408]	chr16	634579	4	INTRON	INTRON	FANCA	ENSG00000187741.16	ENST00000561667.2:ENST00000389301.8:ENST00000568369.6:ENST00000564475.6:ENST00000696275.1:ENST00000696287.1:ENST00000696286.1:ENST00000696274.1:ENST00000696291.1:ENST00000696276.1:ENST00000567205.2:ENST00000567284.7:ENST00000696277.1:ENST00000696292.1:ENST00000563767.2:ENST00000567621.6:ENST00000696288.1:ENST00000696293.1:ENST00000566889.5:ENST00000389302.7:ENST00000696294.1:ENST00000696295.1:ENST00000563673.5:ENST00000543736.5:ENST00000534992.5:ENST00000565582.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	85	2	2.30499	2.40299	2.50099	0.00683258	0.00245021	0.0713163	0.0457892
chr15	80067894	80067994	6071115	0	+	0.2	[0,0.28]	chr15	578304	68	INTRON	INTRON	ZFAND6	ENSG00000086666.19	ENST00000613266.4:ENST00000561060.5:ENST00000559157.5:ENST00000261749.11:ENST00000561012.5:ENST00000564367.5:ENST00000558494.5:ENST00000618205.4:ENST00000560470.5	protein_coding	protein_coding	protein_coding	protein_coding	8	138	2	1.83936	2.4029800000000003	2.9666	0.0108459	0.00252653	0.0921804	0.0446985
chr10	86496101	86496201	4659106	0	-	0.31	(0.28,0.32]	chr10	429282	218	INTRON	INTRON	WAPL	ENSG00000062650.20	ENST00000298767.10	protein_coding	protein_coding	protein_coding	protein_coding	4	72	2	2.33381	2.4029550000000004	2.4721	0.0174951	0.00906617	0.104863	0.0854289
chr15	78877264	78877354	6069583	0	+	0.5	(0.476,0.515]	chr15	578188	3	INTRON	INTRON	MORF4L1	ENSG00000185787.15	ENST00000379535.8:ENST00000559697.5:ENST00000331268.9:ENST00000557961.5:ENST00000559930.5:ENST00000426013.7:ENST00000558746.5:ENST00000558893.5:ENST00000558830.5:ENST00000558522.5:ENST00000559619.5:ENST00000559345.5:ENST00000561171.5:ENST00000558502.5:ENST00000559258.5:ENST00000559690.5:ENST00000559158.5:ENST00000560422.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	58	2	1.4553	2.402945	3.35059	0.0623645	0.00171515	0.175357	0.0381936
chr7	148856904	148857004	3670489	0	-	0.39	(0.378,0.408]	chr7	340628	92	INTRON	INTRON	EZH2	ENSG00000106462.12	ENST00000683292.1:ENST00000320356.7:ENST00000492143.5:ENST00000478654.5:ENST00000350995.6:ENST00000460911.5:ENST00000683744.1:ENST00000682317.1:ENST00000682263.1:ENST00000684300.1:ENST00000476773.5:ENST00000483967.5:ENST00000498186.5:ENST00000483012.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	54	2	2.2708	2.402915	2.53503	0.0319942	0.00646593	0.13174	0.073179
chr3	5146549	5146648	1353818	0	+	0.353535	(0.35,0.378]	chr3	142361	176	INTRON	INTRON	ARL8B	ENSG00000134108.14	ENST00000429403.5:ENST00000256496.8:ENST00000455168.5:ENST00000444332.1:ENST00000419534.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	113	2	2.04209	2.4028099999999997	2.76353	0.00343059	0.00246593	0.0517761	0.0459275
chr4	88756869	88756968	2199942	0	-	0.30303	(0.28,0.32]	chr4	215911	59	INTRON	INTRON	FAM13A	ENSG00000138640.15	ENST00000395002.6:ENST00000264344.10:ENST00000511573.5:ENST00000503556.5:ENST00000511976.5:ENST00000508369.5:ENST00000513837.5:ENST00000504836.5:ENST00000507352.1:ENST00000515155.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	73	2	1.76061	2.40273	3.04485	0.0253826	0.00894006	0.133676	0.0799922
chr22	49651926	49652026	7602607	0	-	0.53	(0.515,0.57]	chr22	778594	245	INTRON	INTRON	MIR3667HG	ENSG00000188511.13	ENST00000414287.5:ENST00000416411.1:ENST00000689875.1:ENST00000400023.5:ENST00000405854.5	lncRNA	lncRNA	lncRNA	lncRNA	17	184	2	2.34952	2.4027250000000002	2.45593	2.58489e-4	1.25482e-4	0.0148796	0.00957656
chr11	67430973	67431071	4815110	0	+	0.408163	(0.378,0.408]	chr11	448443	15	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	RPS6KB2	ENSG00000175634.15	ENST00000530623.5:ENST00000556575.5:ENST00000312629.10:ENST00000524814.5:ENST00000524934.5:ENST00000420069.3:ENST00000528964.5:ENST00000525088.5:ENST00000525996.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	59	2	2.05897	2.4027149999999997	2.74646	0.0339294	0.00271684	0.134508	0.0481064
chr1	50785901	50786001	450509	0	-	0.42	(0.408,0.44]	chr1	54249	408	INTRON	INTRON	FAF1	ENSG00000185104.21	ENST00000396153.7:ENST00000487898.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	133	2	2.32298	2.402675	2.48237	0.00178682	5.72623e-4	0.037989	0.0217398
chr16	54923149	54923248	6488474	0	-	0.444444	(0.44,0.476]	chr16	627574	68	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	CRNDE	ENSG00000245694.11	ENST00000613942.2:ENST00000661493.1:ENST00000668556.1:ENST00000660344.1:ENST00000502066.7:ENST00000559598.7:ENST00000688921.1:ENST00000501177.9:ENST00000661312.1:ENST00000689582.1:ENST00000558031.7:ENST00000689375.1:ENST00000691307.1:ENST00000657142.1:ENST00000557792.2:ENST00000559432.6:ENST00000655114.1:ENST00000560912.6:ENST00000558952.2	lncRNA	lncRNA	lncRNA	lncRNA	8	97	2	2.20903	2.402675	2.59632	0.00579248	0.00143587	0.0662959	0.0347139
chr7	156888370	156888470	3687970	0	-	0.34	(0.32,0.35]	chr7	342096	511	INTRON	INTRON	LMBR1	ENSG00000105983.23	ENST00000353442.10:ENST00000415428.5:ENST00000454132.5:ENST00000434503.5:ENST00000430278.5:ENST00000434278.5:ENST00000444719.5:ENST00000461469.5:ENST00000414218.1:ENST00000434453.1:ENST00000498034.5:ENST00000433968.5:ENST00000485985.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	125	2	1.91062	2.402655	2.89469	0.00946346	6.9734e-4	0.0863138	0.024224
chr15	41359946	41360046	6005052	0	+	0.48	(0.476,0.515]	chr15	571331	13	INTRON	INTRON	NUSAP1	ENSG00000137804.14	ENST00000668273.1:ENST00000260359.10:ENST00000558123.5:ENST00000414849.6:ENST00000450592.6:ENST00000559596.6:ENST00000560747.5:ENST00000560177.5:ENST00000557840.5:ENST00000560898.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	42	2	2.32001	2.40264	2.48527	0.03496	0.0136217	0.13747500000000001	0.101682
chr7	129942002	129942101	3637864	0	-	0.50505	(0.476,0.515]	chr7	338230	44	INTRON	INTRON	UBE2H	ENSG00000186591.13	ENST00000355621.8:ENST00000473814.6:ENST00000496698.5:ENST00000472396.5:ENST00000480245.5:ENST00000490974.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	42	2	2.32001	2.40264	2.48527	0.03496	0.0136217	0.13747500000000001	0.101682
chr20	1456057	1456151	7305526	0	-	0.404255	(0.378,0.408]	chr20	743742	3	EXON_LNCRNA	EXON_LNCRNA:SS3_PROX:INTRON	NSFL1C	ENSG00000088833.18	ENST00000476071.5:ENST00000555944.5:ENST00000353088.6:ENST00000461211.5:ENST00000216879.9:ENST00000381653.9:ENST00000555568.5:ENST00000470376.5:ENST00000553571.5:ENST00000489203.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	81	2	2.28793	2.40263	2.51733	0.00808319	0.00291235	0.0766625	0.0494641
chr22	21576771	21576871	7481795	0	+	0.41	(0.408,0.44]	chr22	763232	80	INTRON	INTRON	UBE2L3	ENSG00000185651.16	ENST00000458578.6:ENST00000545681.2:ENST00000696046.1:ENST00000342192.9:ENST00000496722.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	150	2	2.21937	2.4026	2.58583	9.38868e-4	6.40147e-4	0.0280776	0.0228915
chr15	87566693	87566793	6255221	0	-	0.36	(0.35,0.378]	chr15	596826	233	INTRON	INTRON	ENSG00000259560	ENSG00000259560.2	ENST00000665121.1:ENST00000560439.1	lncRNA	lncRNA	lncRNA	lncRNA	3	50	2	2.39746	2.4025800000000004	2.4077	0.041314	0.0122026	0.161534	0.0910127
chr22	19073511	19073610	7551524	0	-	0.373737	(0.35,0.378]	chr22	771897	49	INTRON	INTRON	DGCR2	ENSG00000070413.20	ENST00000537045.5:ENST00000545799.5:ENST00000263196.12:ENST00000389262.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	50	2	2.39746	2.4025800000000004	2.4077	0.041314	0.0122026	0.161534	0.0910127
chrX	3891040	3891139	7747501	0	-	0.373737	(0.35,0.378]	chrX	793134	89	INTRON	INTRON	ENSG00000285756	ENSG00000285756.2	ENST00000648217.1:ENST00000650456.1:ENST00000650538.1	lncRNA	lncRNA	lncRNA	lncRNA	3	50	2	2.39746	2.4025800000000004	2.4077	0.041314	0.0122026	0.161534	0.0910127
chr3	177099128	177099216	1871455	0	-	0.511364	(0.476,0.515]	chr3	187399	2	SS5_PROX	SS5_PROX:INTRON	TBL1XR1	ENSG00000177565.18	ENST00000457928.7:ENST00000430069.5:ENST00000673974.1:ENST00000352800.10:ENST00000422442.6:ENST00000428970.5:ENST00000424913.5:ENST00000437738.5:ENST00000431421.5:ENST00000635794.1:ENST00000630796.2:ENST00000450267.5:ENST00000630833.2:ENST00000431674.5:ENST00000422066.5:ENST00000443315.5:ENST00000627825.2:ENST00000427349.5:ENST00000413084.5:ENST00000637137.1:ENST00000491623.2:ENST00000637544.1:ENST00000636478.1:ENST00000637755.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	68	2	2.31726	2.402575	2.48789	0.015077	0.00256502	0.0994339	0.0466761
chr17	41851866	41851965	6769622	0	-	0.434343	(0.408,0.44]	chr17	666406	35	UTR3	UTR3:EXON_MRNA	KLHL11	ENSG00000178502.6	ENST00000319121.4	protein_coding	protein_coding	protein_coding	protein_coding	8	76	2	1.43341	2.402515	3.37162	0.0302713	0.00208674	0.143025	0.0411801
chr2	200859279	200859379	1310058	0	-	0.43	(0.408,0.44]	chr2	137037	2	SS5_PROX	SS5_PROX:INTRON	CLK1	ENSG00000013441.17	ENST00000321356.9:ENST00000461981.5:ENST00000473565.5:ENST00000432425.5:ENST00000409403.6:ENST00000434813.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	76	2	1.43341	2.402515	3.37162	0.0302713	0.00208674	0.143025	0.0411801
chr11	57780204	57780304	4793315	0	+	0.49	(0.476,0.515]	chr11	443717	157	INTRON	INTRON	ENSG00000288534:CTNND1	ENSG00000288534.1:ENSG00000198561.16	ENST00000673781.1:ENST00000673810.1:ENST00000674116.1:ENST00000674060.1:ENST00000524630.5:ENST00000529919.5:ENST00000533189.1:ENST00000682741.1:ENST00000358694.10:ENST00000361332.8:ENST00000361391.10:ENST00000361796.9:ENST00000415361.6:ENST00000426142.6:ENST00000428599.6:ENST00000525902.5:ENST00000526357.5:ENST00000526772.5:ENST00000527467.5:ENST00000528232.5:ENST00000528621.5:ENST00000529526.5:ENST00000529873.5:ENST00000529986.5:ENST00000530094.5:ENST00000530748.5:ENST00000531014.5:ENST00000532245.5:ENST00000532463.5:ENST00000532649.5:ENST00000532787.5:ENST00000532844.5:ENST00000533667.5:ENST00000534579.5:ENST00000399050.10:ENST00000526938.5:ENST00000531007.2:ENST00000674015.1:ENST00000673826.1:ENST00000673683.1:ENST00000674106.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	131	2	2.29244	2.402445	2.51245	0.00195632	4.93325e-4	0.0400784	0.0201056
chr15	40166258	40166358	6001298	0	+	0.29	(0.28,0.32]	chr15	570581	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	BUB1B	ENSG00000156970.13	ENST00000560120.5:ENST00000559414.5:ENST00000412359.7:ENST00000558715.5:ENST00000287598.11	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	53	2	2.28998	2.40243	2.51488	0.0380957	0.0166401	0.141678	0.110511
chr7	103316458	103316551	3594033	0	-	0.387097	(0.378,0.408]	chr7	335477	5	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DNAJC2	ENSG00000105821.15	ENST00000379263.8:ENST00000249270.11:ENST00000475065.5:ENST00000492497.1:ENST00000464253.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	59	2	2.39444	2.402405	2.41037	0.0122858	0.0100185	0.091087	0.0880217
chr7	97128791	97128891	3357069	0	+	0.36	(0.35,0.378]	chr7	313205	105	INTRON	INTRON	SDHAF3	ENSG00000196636.8	ENST00000432641.3:ENST00000489852.1:ENST00000360382.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	70	2	1.6756	2.402325	3.12905	0.0219737	0.00566312	0.123836	0.0653997
chr4	55610274	55610374	2150436	0	-	0.49	(0.476,0.515]	chr4	211629	7	INTRON	INTRON	NMU	ENSG00000109255.11	ENST00000511469.5:ENST00000264218.7:ENST00000505262.5:ENST00000507338.1:ENST00000515325.5:ENST00000509371.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	68	2	2.06898	2.40231	2.73564	0.0137491	0.00333144	0.10247	0.0512081
chr16	89521032	89521129	6420469	0	+	0.536082	(0.515,0.57]	chr16	616215	9	EXON_LNCRNA	EXON_LNCRNA:INTRON	SPG7	ENSG00000197912.16	ENST00000647079.1:ENST00000646303.1:ENST00000643649.1:ENST00000643307.1:ENST00000566371.6:ENST00000644498.1:ENST00000645897.1:ENST00000643668.1:ENST00000644225.1:ENST00000645818.2:ENST00000645977.1:ENST00000645063.1:ENST00000646263.1:ENST00000643724.1:ENST00000644781.1:ENST00000644901.1:ENST00000645042.1:ENST00000646531.1:ENST00000646930.1:ENST00000642436.1:ENST00000644210.1:ENST00000564047.2:ENST00000646589.1:ENST00000268704.7:ENST00000646826.1:ENST00000646716.1:ENST00000643345.1:ENST00000341316.6:ENST00000645533.1:ENST00000646958.1:ENST00000642371.1:ENST00000643105.1:ENST00000645354.1:ENST00000643957.1:ENST00000642334.1:ENST00000647227.1:ENST00000562775.2:ENST00000568151.1:ENST00000646445.1:ENST00000564409.2:ENST00000643954.1:ENST00000646399.1:ENST00000644671.1:ENST00000643178.1:ENST00000611189.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	44	2	1.60221	2.402305	3.2024	0.0581855	0.00322022	0.188704	0.0507087
chr3	172187997	172188097	1561037	0	+	0.51	(0.476,0.515]	chr3	161562	8	INTRON	INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000469491.5:ENST00000336824.8:ENST00000416957.5:ENST00000478016.1:ENST00000443501.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	56	2	2.26789	2.4023	2.53671	0.0176567	0.00624027	0.105233	0.0718843
chr11	85999754	85999851	5014131	0	-	0.381443	(0.378,0.408]	chr11	472953	25	INTRON	INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000630913.2:ENST00000529760.5:ENST00000528398.5:ENST00000356360.9:ENST00000529016.5:ENST00000530542.1	protein_coding	protein_coding	protein_coding	protein_coding	9	119	2	1.56924	2.40229	3.23534	0.0267731	5.26448e-5	0.123349	0.00591845
chr6	147220558	147220658	2988869	0	+	0.38	(0.378,0.408]	chr6	280001	141	INTRON	INTRON	STXBP5	ENSG00000164506.15	ENST00000321680.11:ENST00000367481.7:ENST00000546097.5:ENST00000367480.7	protein_coding	protein_coding	protein_coding	protein_coding	11	145	2	2.21619	2.40227	2.58835	9.92739e-4	9.55992e-4	0.0288775	0.0284395
chr1	223758203	223758300	320724	0	+	0.536082	(0.515,0.57]	chr1	36914	7	EXON_LNCRNA	EXON_LNCRNA:INTRON	CAPN2	ENSG00000162909.18	ENST00000433674.6:ENST00000295006.6:ENST00000474026.5:ENST00000487223.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	75	2	1.64415	2.40226	3.16037	0.0231656	4.09074e-4	0.127036	0.0185763
chr5	179825923	179826021	2561708	0	+	0.5	(0.476,0.515]	chr5	245049	3	INTRON	INTRON	SQSTM1	ENSG00000161011.20	ENST00000389805.9:ENST00000510187.5:ENST00000360718.5:ENST00000466342.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	80	2	1.19824	2.402255	3.60627	0.0568052	7.49088e-4	0.185406	0.0251179
chr12	105109640	105109738	5214657	0	+	0.5	(0.476,0.515]	chr12	493392	14	INTRON	INTRON	WASHC4	ENSG00000136051.15	ENST00000548195.5:ENST00000311317.8:ENST00000550053.5:ENST00000332180.10:ENST00000620430.5:ENST00000547404.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	42	2	1.91817	2.402235	2.8863	0.0459211	0.0111679	0.164984	0.0877435
chr3	15047184	15047284	1372793	0	+	0.51	(0.476,0.515]	chr3	144690	43	UTR3	UTR3:EXON_MRNA:INTRON	NR2C2	ENSG00000177463.16	ENST00000425241.6:ENST00000617312.4:ENST00000439011.5:ENST00000413194.1	protein_coding	protein_coding	protein_coding	protein_coding	7	93	2	2.31529	2.4022300000000003	2.48917	0.00614783	0.00110233	0.0676501	0.03038
chr1	120281232	120281332	202946	0	+	0.46	(0.44,0.476]	chr1	22366	28	INTRON	INTRON	ENSG00000274642	ENSG00000274642.1	ENST00000612320.1	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	7	96	2	2.07016	2.40217	2.73418	0.0151815	3.00142e-4	0.0994339	0.0155054
chr4	126453333	126453433	2235238	0	-	0.31	(0.28,0.32]	chr4	219005	180	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1:ENST00000651327.1	lncRNA	lncRNA	lncRNA	lncRNA	13	186	2	1.78531	2.40214	3.01897	0.00499925	4.87801e-4	0.0646039	0.0204446
chr19	58249808	58249908	7106739	0	+	0.35	(0.32,0.35]	chr19	713338	23	INTRON	INTRON	ZNF544	ENSG00000198131.15	ENST00000599227.5:ENST00000687789.1:ENST00000594384.5:ENST00000652201.1:ENST00000596825.5:ENST00000596929.5:ENST00000596677.5:ENST00000600220.5:ENST00000600044.5:ENST00000596652.5:ENST00000599953.1:ENST00000598880.5:ENST00000595981.5:ENST00000627781.2:ENST00000269829.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	110	2	2.15035	2.40211	2.65387	0.00745925	0.00137401	0.0748233	0.0340409
chr14	102609319	102609419	5822700	0	+	0.37	(0.35,0.378]	chr14	552490	156	INTRON	INTRON	RCOR1	ENSG00000089902.10	ENST00000262241.7	protein_coding	protein_coding	protein_coding	protein_coding	4	62	2	2.04224	2.4020799999999998	2.76192	0.0363073	0.00265021	0.138959	0.0474328
chr15	28300016	28300115	6123845	0	-	0.373737	(0.35,0.378]	chr15	583407	1	INTRON	INTRON	HERC2	ENSG00000128731.18	ENST00000261609.13:ENST00000564734.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	62	2	2.04224	2.4020799999999998	2.76192	0.0363073	0.00265021	0.138959	0.0474328
chr16	16521411	16521510	6311076	0	+	0.40404	(0.378,0.408]	chr16	604098	214	INTRON	INTRON	ENSG00000260126	ENSG00000260126.2	ENST00000567465.2	lncRNA	lncRNA	lncRNA	lncRNA	6	81	2	1.82119	2.40207	2.98295	0.0214651	9.47389e-4	0.114274	0.0282007
chr1	21735430	21735529	396379	0	-	0.454545	(0.44,0.476]	chr1	47298	27	INTRON	INTRON	USP48	ENSG00000090686.16	ENST00000400301.5:ENST00000308271.14:ENST00000529637.5:ENST00000421625.6:ENST00000374730.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	93	2	2.35576	2.4019399999999997	2.44812	0.00368597	0.00208591	0.0535094	0.0424672
chr12	79370575	79370675	5373543	0	-	0.51	(0.476,0.515]	chr12	512618	288	INTRON	INTRON	ENSG00000257894	ENSG00000257894.2	ENST00000549527.1	lncRNA	lncRNA	lncRNA	lncRNA	4	50	2	1.86014	2.40182	2.9435	0.0277606	0.00929849	0.137011	0.0817766
chr7	157191574	157191673	3454478	0	+	0.494949	(0.476,0.515]	chr7	322957	24	INTRON	INTRON	UBE3C	ENSG00000009335.18	ENST00000348165.10	protein_coding	protein_coding	protein_coding	protein_coding	4	50	2	1.86014	2.40182	2.9435	0.0277606	0.00929849	0.137011	0.0817766
chr20	63196510	63196608	7362582	0	-	0.357143	(0.35,0.378]	chr20	751220	12	UTR3	UTR3:EXON_MRNA	YTHDF1	ENSG00000149658.18	ENST00000370339.8:ENST00000370334.4	protein_coding	protein_coding	protein_coding	protein_coding	4	62	2	2.39583	2.401765	2.4077	0.0122026	0.0107976	0.0920575	0.0910127
chr7	106097189	106097289	3608053	0	-	0.28	[0,0.28]	chr7	336446	1	SS5_PROX	SS5_PROX:INTRON	SYPL1	ENSG00000008282.9	ENST00000011473.6:ENST00000455385.7:ENST00000464029.5:ENST00000470347.1:ENST00000634737.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	100	2	1.76483	2.401665	3.0385	0.0483	0.00116412	0.153327	0.0314524
chr4	17631326	17631425	1927021	0	+	0.515152	(0.476,0.515]	chr4	193701	58	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	MED28	ENSG00000118579.13	ENST00000237380.12:ENST00000499786.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	158	2	2.30786	2.401595	2.49533	8.67866e-4	4.43371e-4	0.0267245	0.019435
chr3	150565326	150565426	1534219	0	+	0.36	(0.35,0.378]	chr3	159877	1	SS5_PROX	SS5_PROX:INTRON	EIF2A	ENSG00000144895.12	ENST00000487799.5:ENST00000494558.5:ENST00000460851.6:ENST00000406576.7:ENST00000482093.5:ENST00000273435.9:ENST00000462221.5:ENST00000477551.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	56	2	1.58862	2.40159	3.21456	0.0615516	0.00420814	0.193423	0.0572185
chr7	152099898	152099998	3450259	0	+	0.41	(0.408,0.44]	chr7	322458	50	INTRON	INTRON	GALNT11	ENSG00000178234.13	ENST00000430044.7:ENST00000482812.1:ENST00000446096.5:ENST00000447778.5:ENST00000423337.5:ENST00000434507.5:ENST00000415421.5:ENST00000422997.6:ENST00000419245.5:ENST00000447796.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	60	2	1.74775	2.40154	3.05533	0.0735403	6.50769e-4	0.190238	0.0231135
chr20	62913011	62913110	7362319	0	-	0.333333	(0.32,0.35]	chr20	751204	10	INTRON	INTRON	DIDO1	ENSG00000101191.17	ENST00000266070.8:ENST00000395343.6:ENST00000395340.5:ENST00000370371.8:ENST00000370368.5:ENST00000354665.8:ENST00000370366.1	protein_coding	protein_coding	protein_coding	protein_coding	10	155	2	2.18183	2.4015000000000004	2.6211700000000002	0.00419013	3.39207e-4	0.0572176	0.0163981
chr7	152655627	152655727	3681414	0	-	0.61	(0.57,1]	chr7	341677	59	INTRON	INTRON	XRCC2	ENSG00000196584.3	ENST00000359321.2:ENST00000495707.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	41	2	2.06823	2.401485	2.73474	0.00680672	0.00241874	0.0711884	0.0454275
chr21	34142772	34142858	7401790	0	+	0.406977	(0.378,0.408]	chr21	753985	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	MRPS6	ENSG00000243927.6	ENST00000488492.5:ENST00000477091.5:ENST00000399312.3:ENST00000483977.5:ENST00000482679.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	60	2	1.84831	2.40145	2.95459	0.0172621	0.00957623	0.111749	0.0820838
chr1	155552467	155552567	562793	0	-	0.43	(0.408,0.44]	chr1	67117	305	INTRON	INTRON	ASH1L	ENSG00000116539.14	ENST00000676814.1:ENST00000392403.8:ENST00000368346.7:ENST00000677213.1:ENST00000678117.1:ENST00000679097.1:ENST00000679333.1:ENST00000679133.1:ENST00000548830.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	51	2	2.08376	2.401435	2.71911	0.0189489	0.0129886	0.108861	0.0991656
chr2	169596704	169596803	906594	0	+	0.515152	(0.476,0.515]	chr2	100021	36	INTRON	INTRON	PPIG	ENSG00000138398.17	ENST00000678088.1:ENST00000677392.1:ENST00000433207.6:ENST00000679324.1:ENST00000414307.6:ENST00000676508.1:ENST00000260970.8:ENST00000678695.1:ENST00000409714.7:ENST00000530152.5:ENST00000677750.1:ENST00000676557.1:ENST00000678721.1:ENST00000462903.6:ENST00000676756.1:ENST00000679107.1:ENST00000678499.1:ENST00000678638.1:ENST00000448752.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	56	2	2.31726	2.4013850000000003	2.48551	0.015077	0.00756632	0.0994339	0.0773151
chr1	227247672	227247772	651011	0	-	0.47	(0.44,0.476]	chr1	77102	279	INTRON	INTRON	CDC42BPA	ENSG00000143776.20	ENST00000366766.8:ENST00000366769.7:ENST00000334218.9:ENST00000366767.7:ENST00000366764.8:ENST00000478573.6:ENST00000682551.1:ENST00000462553.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	68	2	2.12992	2.40137	2.67282	0.010975	0.00433875	0.092635	0.0579868
chr16	71763153	71763252	6514001	0	-	0.393939	(0.378,0.408]	chr16	631145	12	INTRON	INTRON	AP1G1	ENSG00000166747.13	ENST00000299980.9:ENST00000569748.5:ENST00000393512.7:ENST00000565009.5:ENST00000565642.5:ENST00000568327.5:ENST00000566179.1:ENST00000450149.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	109	2	1.69987	2.401305	3.10274	0.00586642	0.00503271	0.0668095	0.0646039
chr15	90878663	90878763	6102047	0	+	0.58	(0.57,1]	chr15	581039	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	FURIN	ENSG00000140564.13	ENST00000268171.8:ENST00000610579.4:ENST00000680053.1:ENST00000618099.4:ENST00000680687.1:ENST00000681804.1:ENST00000681865.1:ENST00000558794.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	23	2	2.13445	2.40123	2.66801	0.0241482	0.0169968	0.12011	0.110899
chr2	26050178	26050278	713260	0	+	0.36	(0.35,0.378]	chr2	82440	75	INTRON	INTRON	RAB10	ENSG00000084733.11	ENST00000264710.5:ENST00000495146.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	85	2	1.97697	2.401115	2.82526	0.0109711	0.00269503	0.092635	0.0466389
chr15	64303719	64303819	6204303	0	-	0.52	(0.515,0.57]	chr15	591752	26	INTRON	INTRON	CSNK1G1:ENSG00000259316	ENSG00000169118.18:ENSG00000259316.12	ENST00000303052.13:ENST00000607537.6:ENST00000634654.1:ENST00000634811.1:ENST00000606793.3:ENST00000634251.1:ENST00000634847.3:ENST00000635270.1:ENST00000635529.1:ENST00000634318.1:ENST00000635514.1:ENST00000635160.1:ENST00000635704.1:ENST00000634529.1:ENST00000635511.1:ENST00000635605.1:ENST00000635593.1:ENST00000634259.2:ENST00000560278.2:ENST00000635413.1:ENST00000634538.1:ENST00000635320.1:ENST00000558783.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	27	2	2.23915	2.4011050000000003	2.56306	0.0596178	0.0247751	0.16883600000000001	0.131869
chr15	64483311	64483410	6044315	0	+	0.565657	(0.515,0.57]	chr15	575688	221	INTRON	INTRON	ZNF609	ENSG00000180357.10	ENST00000326648.5:ENST00000416172.1	protein_coding	protein_coding	protein_coding	protein_coding	2	27	2	2.23915	2.4011050000000003	2.56306	0.0596178	0.0247751	0.16883600000000001	0.131869
chr19	10872821	10872920	7014980	0	+	0.525253	(0.515,0.57]	chr19	697070	5	INTRON	INTRON	CARM1	ENSG00000142453.12	ENST00000327064.9:ENST00000588947.5:ENST00000590699.5:ENST00000344150.8:ENST00000586221.5:ENST00000590039.5:ENST00000589693.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	27	2	2.23915	2.4011050000000003	2.56306	0.0596178	0.0247751	0.16883600000000001	0.131869
chr19	19410618	19410718	7035395	0	+	0.53	(0.515,0.57]	chr19	701433	42	INTRON	INTRON	GATAD2A	ENSG00000167491.18	ENST00000494516.6:ENST00000360315.7:ENST00000609040.5:ENST00000417582.6:ENST00000683918.1:ENST00000448576.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	27	2	2.23915	2.4011050000000003	2.56306	0.0596178	0.0247751	0.16883600000000001	0.131869
chr2	23780574	23780674	1079458	0	-	0.55	(0.515,0.57]	chr2	115203	146	INTRON	INTRON	ATAD2B	ENSG00000119778.15	ENST00000238789.10:ENST00000381024.4:ENST00000474583.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	27	2	2.23915	2.4011050000000003	2.56306	0.0596178	0.0247751	0.16883600000000001	0.131869
chr3	4654876	4654974	1351494	0	+	0.530612	(0.515,0.57]	chr3	142010	6	INTRON	INTRON	ITPR1	ENSG00000150995.21	ENST00000357086.10:ENST00000649015.2:ENST00000354582.12:ENST00000456211.8:ENST00000443694.5:ENST00000648266.1:ENST00000477577.2:ENST00000544951.6:ENST00000650294.1:ENST00000648309.1:ENST00000302640.13:ENST00000649051.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:non_stop_decay:nonsense_mediated_decay	2	27	2	2.23915	2.4011050000000003	2.56306	0.0596178	0.0247751	0.16883600000000001	0.131869
chr6	15053686	15053785	3063472	0	-	0.525253	(0.515,0.57]	chr6	284666	1	INTRON	INTRON	ENSG00000234261	ENSG00000234261.5	ENST00000653525.1:ENST00000656468.1:ENST00000656344.1:ENST00000437648.1:ENST00000656807.1	lncRNA	lncRNA	lncRNA	lncRNA	2	27	2	2.23915	2.4011050000000003	2.56306	0.0596178	0.0247751	0.16883600000000001	0.131869
chr21	10425187	10425287	7368246	0	+	0.38	(0.378,0.408]	chr21	751975	99	INTRON	INTRON	BAGE2	ENSG00000187172.15	ENST00000474011.5:ENST00000470054.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	7	97	2	2.33619	2.401075	2.46596	0.00607113	0.00125753	0.0676501	0.03295
chr10	18675314	18675413	4404239	0	+	0.323232	(0.32,0.35]	chr10	406395	2	UTR3	UTR3:EXON_MRNA	ARL5B	ENSG00000165997.5	ENST00000377275.4	protein_coding	protein_coding	protein_coding	protein_coding	6	93	2	1.46414	2.401045	3.33795	0.065059	1.93e-4	0.179599	0.012131
chr1	202556981	202557080	294876	0	+	0.484848	(0.476,0.515]	chr1	33892	164	INTRON	INTRON	PPP1R12B	ENSG00000077157.22	ENST00000391959.5:ENST00000608999.6:ENST00000290419.9:ENST00000491336.5:ENST00000466273.6:ENST00000634903.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	31	2	2.23335	2.401015	2.56868	0.0634557	0.0256676	0.177047	0.133676
chr16	2255921	2256019	6431569	0	-	0.489796	(0.476,0.515]	chr16	618786	3	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	RNPS1	ENSG00000205937.12	ENST00000397086.6:ENST00000566458.5:ENST00000320225.10:ENST00000562205.1:ENST00000566397.5:ENST00000565678.5:ENST00000561718.5:ENST00000568631.5:ENST00000569598.6:ENST00000301730.12:ENST00000567147.5:ENST00000565243.2:ENST00000565870.5:ENST00000561518.5:ENST00000564311.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	31	2	2.23335	2.401015	2.56868	0.0634557	0.0256676	0.177047	0.133676
chr4	70824549	70824631	2155662	0	-	0.487805	(0.476,0.515]	chr4	212364	2	SS3_PROX	SS3_PROX:INTRON	GRSF1	ENSG00000132463.15	ENST00000254799.11:ENST00000505068.5:ENST00000499044.6:ENST00000502323.5:ENST00000514161.5:ENST00000506453.1:ENST00000508091.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	31	2	2.23335	2.401015	2.56868	0.0634557	0.0256676	0.177047	0.133676
chr5	37027712	37027812	2339977	0	+	0.49	(0.476,0.515]	chr5	226121	3	SS5_PROX	SS5_PROX:INTRON	NIPBL	ENSG00000164190.19	ENST00000282516.13:ENST00000448238.2:ENST00000652901.1	protein_coding	protein_coding	protein_coding	protein_coding	2	31	2	2.23335	2.401015	2.56868	0.0634557	0.0256676	0.177047	0.133676
chr5	69640666	69640766	2637139	0	-	0.51	(0.476,0.515]	chr5	250503	3	SS3_PROX	SS3_PROX:INTRON	GUSBP3	ENSG00000253203.6	ENST00000513408.6:ENST00000509348.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	2	31	2	2.23335	2.401015	2.56868	0.0634557	0.0256676	0.177047	0.133676
chr6	15043839	15043939	3063371	0	-	0.51	(0.476,0.515]	chr6	284657	220	INTRON	INTRON	ENSG00000234261	ENSG00000234261.5	ENST00000653525.1:ENST00000656468.1:ENST00000656344.1:ENST00000437648.1	lncRNA	lncRNA	lncRNA	lncRNA	2	31	2	2.23335	2.401015	2.56868	0.0634557	0.0256676	0.177047	0.133676
chr6	98905970	98906070	3165163	0	-	0.48	(0.476,0.515]	chr6	295198	3	SS3_PROX	SS3_PROX:INTRON	FBXL4	ENSG00000112234.9	ENST00000369244.7:ENST00000229971.2	protein_coding	protein_coding	protein_coding	protein_coding	2	31	2	2.23335	2.401015	2.56868	0.0634557	0.0256676	0.177047	0.133676
chr7	121292548	121292648	3396703	0	+	0.48	(0.476,0.515]	chr7	317818	208	INTRON	INTRON	CPED1	ENSG00000106034.18	ENST00000310396.10	protein_coding	protein_coding	protein_coding	protein_coding	2	31	2	2.23335	2.401015	2.56868	0.0634557	0.0256676	0.177047	0.133676
chr9	98003177	98003273	4173240	0	+	0.416667	(0.408,0.44]	chr9	380287	4	INTRON	INTRON	ANP32B	ENSG00000136938.9	ENST00000339399.5:ENST00000473205.1:ENST00000486769.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	94	2	2.29777	2.4010049999999996	2.50424	0.0067764	0.00101099	0.0711802	0.0293364
chr14	28940670	28940769	5670042	0	+	0.494949	(0.476,0.515]	chr14	540368	33	INTRON	INTRON	LINC02327:ENSG00000258028	ENSG00000258038.6:ENSG00000258028.3	ENST00000671154.1:ENST00000656401.1:ENST00000657120.1:ENST00000551588.6:ENST00000658814.1:ENST00000657083.1:ENST00000655423.1:ENST00000664085.1:ENST00000657147.1:ENST00000665952.1:ENST00000660700.1:ENST00000550990.1:ENST00000551227.1	lncRNA	lncRNA	lncRNA	lncRNA	4	59	2	1.79693	2.401	3.00507	0.0649782	8.38796e-4	0.179417	0.0263691
chr1	37704045	37704145	74137	0	+	0.52	(0.515,0.57]	chr1	9552	3	INTRON	INTRON	CDCA8	ENSG00000134690.11	ENST00000327331.2:ENST00000373055.6	protein_coding	protein_coding	protein_coding	protein_coding	2	27	2	2.34087	2.4009549999999997	2.46104	0.0469761	0.032841	0.151917	0.145164
chr1	96728083	96728183	168004	0	+	0.5	(0.476,0.515]	chr1	18215	41	INTRON	INTRON	PTBP2	ENSG00000117569.19	ENST00000482253.5:ENST00000675735.1:ENST00000609116.5:ENST00000674951.1:ENST00000675080.1:ENST00000426398.3:ENST00000460706.5:ENST00000370197.5:ENST00000370198.5:ENST00000476419.5:ENST00000676292.1:ENST00000676096.1:ENST00000675365.1:ENST00000674579.1:ENST00000675401.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	57	2	2.26034	2.4009549999999997	2.54157	0.0166235	0.00697457	0.110511	0.0718189
chr1	227247173	227247273	651006	0	-	0.52	(0.515,0.57]	chr1	77102	274	INTRON	INTRON	CDC42BPA	ENSG00000143776.20	ENST00000366766.8:ENST00000366769.7:ENST00000334218.9:ENST00000366767.7:ENST00000366764.8:ENST00000478573.6:ENST00000682551.1:ENST00000462553.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	27	2	2.34087	2.4009549999999997	2.46104	0.0469761	0.032841	0.151917	0.145164
chr11	68198133	68198233	4973053	0	-	0.53	(0.515,0.57]	chr11	469521	76	INTRON	INTRON	KMT5B	ENSG00000110066.15	ENST00000304363.9:ENST00000427752.6:ENST00000405515.5:ENST00000401547.6:ENST00000402789.5:ENST00000402185.6:ENST00000453170.5:ENST00000458496.1:ENST00000434573.1:ENST00000466295.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	27	2	2.34087	2.4009549999999997	2.46104	0.0469761	0.032841	0.151917	0.145164
chr15	41115372	41115472	6153231	0	-	0.51	(0.476,0.515]	chr15	585431	187	INTRON	INTRON	INO80	ENSG00000128908.18	ENST00000648947.1:ENST00000401393.7:ENST00000558357.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	57	2	2.26034	2.4009549999999997	2.54157	0.0166235	0.00697457	0.110511	0.0718189
chr15	84644588	84644688	6088290	0	+	0.53	(0.515,0.57]	chr15	579431	52	EXON_LNCRNA	EXON_LNCRNA	SCAND2P	ENSG00000176700.21	ENST00000348993.9	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	2	27	2	2.34087	2.4009549999999997	2.46104	0.0469761	0.032841	0.151917	0.145164
chr15	90875281	90875381	6102002	0	+	0.52	(0.515,0.57]	chr15	581004	3	SS3_PROX	SS3_PROX:INTRON	FURIN	ENSG00000140564.13	ENST00000268171.8:ENST00000610579.4:ENST00000680053.1:ENST00000618099.4	protein_coding	protein_coding	protein_coding	protein_coding	2	27	2	2.34087	2.4009549999999997	2.46104	0.0469761	0.032841	0.151917	0.145164
chr16	4715186	4715283	6438062	0	-	0.536082	(0.515,0.57]	chr16	619988	5	INTRON	INTRON	ANKS3	ENSG00000168096.15	ENST00000450067.6:ENST00000614075.4:ENST00000304283.9:ENST00000592077.5:ENST00000590193.5:ENST00000446014.6:ENST00000591653.5:ENST00000590803.5:ENST00000585773.5:ENST00000590730.5:ENST00000586605.5:ENST00000592421.5:ENST00000592068.5:ENST00000586166.5:ENST00000592698.5:ENST00000586159.5:ENST00000586632.1:ENST00000589065.5:ENST00000593120.5:ENST00000592711.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	27	2	2.34087	2.4009549999999997	2.46104	0.0469761	0.032841	0.151917	0.145164
chr16	72085844	72085943	6514908	0	-	0.555556	(0.515,0.57]	chr16	631231	11	UTR3	UTR3:EXON_MRNA:INTRON	TXNL4B	ENSG00000140830.9	ENST00000562153.5:ENST00000268483.8:ENST00000423037.5	protein_coding	protein_coding	protein_coding	protein_coding	2	27	2	2.34087	2.4009549999999997	2.46104	0.0469761	0.032841	0.151917	0.145164
chr5	133056443	133056542	2488045	0	+	0.535354	(0.515,0.57]	chr5	237470	36	INTRON	INTRON	HSPA4	ENSG00000170606.16	ENST00000304858.7	protein_coding	protein_coding	protein_coding	protein_coding	2	27	2	2.34087	2.4009549999999997	2.46104	0.0469761	0.032841	0.151917	0.145164
chr5	150725068	150725167	2751546	0	-	0.535354	(0.515,0.57]	chr5	259227	17	INTRON	INTRON	DCTN4	ENSG00000132912.13	ENST00000447998.7:ENST00000424236.5:ENST00000446090.6:ENST00000627368.2:ENST00000518909.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	27	2	2.34087	2.4009549999999997	2.46104	0.0469761	0.032841	0.151917	0.145164
chr7	23437297	23437397	3503335	0	-	0.52	(0.515,0.57]	chr7	326910	61	INTRON	INTRON	IGF2BP3	ENSG00000136231.14	ENST00000258729.8:ENST00000421467.6:ENST00000468263.5:ENST00000491719.5:ENST00000476938.5:ENST00000468005.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	27	2	2.34087	2.4009549999999997	2.46104	0.0469761	0.032841	0.151917	0.145164
chr7	102011297	102011397	3368307	0	+	0.53	(0.515,0.57]	chr7	315233	513	INTRON	INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000497815.5:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000558469.5:ENST00000560541.5:ENST00000558836.5:ENST00000606749.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	27	2	2.34087	2.4009549999999997	2.46104	0.0469761	0.032841	0.151917	0.145164
chr1	45904389	45904489	94822	0	+	0.51	(0.476,0.515]	chr1	12702	216	INTRON	INTRON	MAST2	ENSG00000086015.23	ENST00000470809.1:ENST00000361297.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	31	2	2.3223	2.4008950000000002	2.47949	0.0519312	0.0326974	0.159306	0.145164
chr15	43031967	43032067	6159932	0	-	0.49	(0.476,0.515]	chr15	586474	15	INTRON	INTRON	UBR1	ENSG00000159459.12	ENST00000290650.9:ENST00000546274.6:ENST00000569066.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	31	2	2.3223	2.4008950000000002	2.47949	0.0519312	0.0326974	0.159306	0.145164
chr15	50666743	50666843	6173082	0	-	0.51	(0.476,0.515]	chr15	588397	33	INTRON	INTRON	TRPM7:ENSG00000288645	ENSG00000092439.16:ENSG00000288645.1	ENST00000646667.1:ENST00000560955.5:ENST00000676296.1	protein_coding	protein_coding	protein_coding	protein_coding	2	31	2	2.3223	2.4008950000000002	2.47949	0.0519312	0.0326974	0.159306	0.145164
chr2	15546517	15546617	1073016	0	-	0.49	(0.476,0.515]	chr2	114459	68	INTRON	INTRON	NBAS	ENSG00000151779.13	ENST00000281513.10	protein_coding	protein_coding	protein_coding	protein_coding	2	31	2	2.3223	2.4008950000000002	2.47949	0.0519312	0.0326974	0.159306	0.145164
chr2	113903985	113904085	854383	0	+	0.51	(0.476,0.515]	chr2	95895	129	INTRON	INTRON	ACTR3	ENSG00000115091.12	ENST00000443297.5:ENST00000263238.7:ENST00000415792.5:ENST00000446821.5:ENST00000535589.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	31	2	2.3223	2.4008950000000002	2.47949	0.0519312	0.0326974	0.159306	0.145164
chr2	167904873	167904973	1258851	0	-	0.49	(0.476,0.515]	chr2	133340	37	INTRON	INTRON	B3GALT1-AS1	ENSG00000235335.3	ENST00000430546.2:ENST00000657553.1:ENST00000670221.1:ENST00000436982.2	lncRNA	lncRNA	lncRNA	lncRNA	2	31	2	2.3223	2.4008950000000002	2.47949	0.0519312	0.0326974	0.159306	0.145164
chr13	113235245	113235345	5548551	0	+	0.33	(0.32,0.35]	chr13	530158	1	SS5_PROX	SS5_PROX:INTRON	CUL4A	ENSG00000139842.15	ENST00000375441.7:ENST00000326335.8:ENST00000451881.5:ENST00000617546.4:ENST00000375440.9	protein_coding	protein_coding	protein_coding	protein_coding	4	67	2	1.94202	2.40088	2.85974	0.0486128	0.00186579	0.153946	0.0399675
chr10	37844205	37844305	4602465	0	-	0.33	(0.32,0.35]	chr10	423985	57	INTRON	INTRON	ZNF248	ENSG00000198105.16	ENST00000615949.6:ENST00000485560.5:ENST00000395867.8:ENST00000357328.8:ENST00000611278.4:ENST00000374648.7:ENST00000395873.7:ENST00000395874.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	49	2	1.77704	2.4008700000000003	3.0247	0.0719969	0.00671684	0.187322	0.0738715
chr5	146269884	146269984	2514795	0	+	0.33	(0.32,0.35]	chr5	240244	3	SS5_PROX	SS5_PROX:INTRON	ENSG00000275740:RBM27	ENSG00000275740.1:ENSG00000091009.8	ENST00000506502.2:ENST00000265271.7	protein_coding	protein_coding	protein_coding	protein_coding	3	49	2	1.77704	2.4008700000000003	3.0247	0.0719969	0.00671684	0.187322	0.0738715
chr7	90347074	90347174	3347261	0	+	0.34	(0.32,0.35]	chr7	311975	3	SS5_PROX	SS5_PROX:INTRON	GTPBP10	ENSG00000105793.16	ENST00000453512.5:ENST00000421719.5:ENST00000426366.5:ENST00000450619.5:ENST00000257659.12:ENST00000417207.5:ENST00000477972.1:ENST00000380058.7:ENST00000222511.11:ENST00000439832.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	49	2	1.77704	2.4008700000000003	3.0247	0.0719969	0.00671684	0.187322	0.0738715
chrX	114029869	114029969	7868339	0	-	0.41	(0.408,0.44]	chrX	801551	380	INTRON	INTRON	XACT	ENSG00000241743.4	ENST00000468762.3:ENST00000649506.1	lncRNA	lncRNA	lncRNA	lncRNA	10	126	2	1.97463	2.4008000000000003	2.82697	0.00412725	4.95662e-4	0.0566415	0.0201536
chr2	227526509	227526609	1026208	0	+	0.44	(0.408,0.44]	chr2	109589	12	INTRON	INTRON	AGFG1	ENSG00000173744.18	ENST00000409979.6:ENST00000310078.13:ENST00000409315.5:ENST00000373671.7:ENST00000409171.5:ENST00000456594.1	protein_coding	protein_coding	protein_coding	protein_coding	10	123	2	2.15397	2.40078	2.64759	0.0016061	0.00128422	0.0364977	0.0333518
chr21	38104929	38105029	7463935	0	-	0.26	[0,0.28]	chr21	760303	52	INTRON	INTRON	DSCR4	ENSG00000184029.9	ENST00000398948.5:ENST00000328264.7:ENST00000482032.1	lncRNA	lncRNA	lncRNA	lncRNA	7	104	2	1.75289	2.40078	3.04867	0.0149351	0.0104221	0.107462	0.085482
chr4	120066318	120066399	2230826	0	-	0.481481	(0.476,0.515]	chr4	218567	1	SS5_PROX	SS5_PROX:INTRON	MAD2L1	ENSG00000164109.14	ENST00000296509.11:ENST00000333047.9:ENST00000504707.1:ENST00000511295.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	50	2	1.91525	2.400775	2.8863	0.0232571	0.0111679	0.127416	0.0877435
chr2	63554582	63554682	1135974	0	-	0.42	(0.408,0.44]	chr2	121873	613	INTRON	INTRON	WDPCP	ENSG00000143951.16	ENST00000272321.12:ENST00000409562.7:ENST00000409835.5:ENST00000417238.5:ENST00000418148.5:ENST00000490935.5:ENST00000431065.1:ENST00000467687.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	42	2	2.14732	2.40076	2.6542	0.0237354	0.0227514	0.129075	0.117618
chr9	19066957	19067055	4236233	0	-	0.428571	(0.408,0.44]	chr9	389370	20	INTRON	INTRON	HAUS6	ENSG00000147874.11	ENST00000380502.8:ENST00000380496.5	protein_coding	protein_coding	protein_coding	protein_coding	3	42	2	2.14732	2.40076	2.6542	0.0237354	0.0227514	0.129075	0.117618
chr3	56669499	56669599	1705879	0	-	0.29	(0.28,0.32]	chr3	175894	4	SS5_PROX	SS5_PROX:INTRON	TASOR	ENSG00000163946.14	ENST00000683822.1:ENST00000493960.6:ENST00000355628.9	protein_coding	protein_coding	protein_coding	protein_coding	4	68	2	1.99988	2.400725	2.80157	0.0228757	0.0147132	0.118056	0.106558
chr16	22522252	22522349	6322841	0	+	0.226804	[0,0.28]	chr16	605482	15	INTRON	INTRON	NPIPB5	ENSG00000243716.11	ENST00000415654.5:ENST00000415833.6:ENST00000543407.5:ENST00000541154.5:ENST00000545375.5:ENST00000424340.6:ENST00000521555.6:ENST00000542518.5:ENST00000517539.5:ENST00000541664.5:ENST00000528249.5:ENST00000517347.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	82	2	2.17149	2.40067	2.62985	0.0308079	0.00581422	0.13151	0.068681
chr9	120524585	120524685	4333323	0	-	0.39	(0.378,0.408]	chr9	398098	2	SS5_PROX	SS5_PROX:INTRON	CDK5RAP2	ENSG00000136861.19	ENST00000349780.9:ENST00000360190.8:ENST00000687279.1:ENST00000687633.1:ENST00000684780.1:ENST00000687311.1:ENST00000690814.1:ENST00000686842.1:ENST00000693714.1:ENST00000693386.1:ENST00000692746.1:ENST00000686376.1:ENST00000692155.1:ENST00000690646.1:ENST00000693433.1:ENST00000688923.1:ENST00000473282.6:ENST00000480112.5:ENST00000685866.1:ENST00000689688.1:ENST00000416449.6:ENST00000691504.1:ENST00000360822.8:ENST00000693728.1:ENST00000483412.5:ENST00000690474.1:ENST00000693137.1:ENST00000693702.1:ENST00000481266.2:ENST00000687024.1:ENST00000482047.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	85	2	2.33619	2.40064	2.46509	0.00607113	0.00287152	0.0676501	0.0494641
chr12	116007110	116007210	5422830	0	-	0.4	(0.378,0.408]	chr12	518212	8	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	MED13L	ENSG00000123066.9	ENST00000281928.9:ENST00000650226.1:ENST00000649607.1:ENST00000648737.1:ENST00000549786.2:ENST00000548743.2:ENST00000648173.1:ENST00000650443.1:ENST00000649655.1:ENST00000549755.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	92	2	2.32375	2.4006350000000003	2.47752	0.0092831	0.00134834	0.0817766	0.0338207
chr6	29630819	29630895	3076509	0	-	0.355263	(0.35,0.378]	chr6	286110	2	SS3_PROX	SS3_PROX:INTRON	GABBR1	ENSG00000204681.11	ENST00000472823.5:ENST00000377016.8:ENST00000377034.9:ENST00000491829.5:ENST00000494877.5:ENST00000376977.7:ENST00000485508.5:ENST00000489385.5:ENST00000467259.1:ENST00000462632.5:ENST00000476670.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	120	2	1.74831	2.40055	3.05279	0.0169142	2.81254e-4	0.110899	0.015437
chr2	107709012	107709112	1205639	0	-	0.29	(0.28,0.32]	chr2	128526	53	INTRON	INTRON	LINC01885:ENSG00000286769	ENSG00000237880.2:ENSG00000286769.1	ENST00000654481.1:ENST00000669817.1	lncRNA	lncRNA	lncRNA	lncRNA	5	73	2	1.60333	2.400535	3.19774	0.0413158	0.00548491	0.161534	0.0648867
chr6	41787825	41787925	2864495	0	+	0.48	(0.476,0.515]	chr6	270891	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	TOMM6	ENSG00000214736.8	ENST00000398884.7:ENST00000398881.4	protein_coding	protein_coding	protein_coding	protein_coding	7	86	2	1.77073	2.4005	3.03027	0.0151174	9.53446e-4	0.108513	0.0282335
chr5	79643969	79644062	2399051	0	+	0.408602	(0.408,0.44]	chr5	231723	7	INTRON	INTRON	TENT2	ENSG00000164329.14	ENST00000423041.6:ENST00000504233.5:ENST00000453514.6:ENST00000428308.6:ENST00000296783.7	protein_coding	protein_coding	protein_coding	protein_coding	19	247	2	2.37283	2.40049	2.42815	2.43191e-4	1.41153e-4	0.0143663	0.0102551
chr17	31977213	31977313	6596085	0	+	0.36	(0.35,0.378]	chr17	641577	2	INTRON	INTRON	SUZ12	ENSG00000178691.11	ENST00000322652.10:ENST00000580398.1	protein_coding	protein_coding	protein_coding	protein_coding	7	102	2	2.32472	2.400475	2.47623	0.0066582	0.0012627	0.0703994	0.0329641
chr22	21855026	21855126	7561260	0	-	0.32	(0.28,0.32]	chr22	773388	468	INTRON	INTRON	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	8	120	2	1.85559	2.40047	2.94535	0.00894463	0.00213731	0.0849778	0.0417866
chr10	68332933	68333032	4440767	0	+	0.59596	(0.57,1]	chr10	409480	3	INTRON	INTRON	HNRNPH3	ENSG00000096746.18	ENST00000469172.5:ENST00000461310.5:ENST00000265866.12:ENST00000480987.5:ENST00000486854.5:ENST00000467249.1:ENST00000354695.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	34	216	2	2.15201	2.40046	2.64891	3.79551e-5	2.05424e-6	0.00494122	9.86874e-4
chr12	124977041	124977141	5447172	0	-	0.34	(0.32,0.35]	chr12	521427	3	SS5_PROX	SS5_PROX:INTRON	DHX37	ENSG00000150990.9	ENST00000308736.7:ENST00000544745.2:ENST00000679875.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	49	2	1.95271	2.400415	2.84812	0.0431213	0.0147575	0.162255	0.0983813
chr1	25454058	25454158	48181	0	+	0.32	(0.28,0.32]	chr1	5932	4	SS3_PROX	SS3_PROX:INTRON	MACO1	ENSG00000204178.11	ENST00000399766.7:ENST00000374343.5:ENST00000647928.1:ENST00000470035.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	54	2	2.32871	2.400405	2.4721	0.0581621	0.00906617	0.167723	0.0854289
chr10	130149711	130149811	4536461	0	+	0.34	(0.32,0.35]	chr10	418785	40	INTRON	INTRON	GLRX3	ENSG00000108010.12	ENST00000331244.10:ENST00000481034.1:ENST00000368644.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	69	2	2.05666	2.400405	2.74415	0.0198267	0.00840213	0.109608	0.0824581
chr2	161194839	161194938	900675	0	+	0.323232	(0.32,0.35]	chr2	99619	147	INTRON	INTRON	TANK	ENSG00000136560.14	ENST00000259075.6:ENST00000432002.5:ENST00000440506.5:ENST00000429217.5:ENST00000406287.5:ENST00000402568.5:ENST00000457887.5:ENST00000392749.7:ENST00000432692.6:ENST00000441987.5:ENST00000405852.5:ENST00000456358.5:ENST00000468831.5:ENST00000403609.1:ENST00000489393.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	69	2	2.05666	2.400405	2.74415	0.0198267	0.00840213	0.109608	0.0824581
chr3	47681402	47681501	1684056	0	-	0.30303	(0.28,0.32]	chr3	172040	5	INTRON	INTRON	SMARCC1	ENSG00000173473.11	ENST00000254480.10:ENST00000425518.5:ENST00000462198.5:ENST00000485737.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	54	2	2.32871	2.400405	2.4721	0.0581621	0.00906617	0.167723	0.0854289
chr3	172783203	172783298	1563554	0	+	0.305263	(0.28,0.32]	chr3	161789	6	INTRON	INTRON	ECT2	ENSG00000114346.14	ENST00000232458.9:ENST00000540509.5:ENST00000392692.8:ENST00000417960.5:ENST00000441497.6:ENST00000444250.1	protein_coding	protein_coding	protein_coding	protein_coding	3	54	2	2.32871	2.400405	2.4721	0.0581621	0.00906617	0.167723	0.0854289
chrX	13371648	13371748	7622673	0	+	0.4	(0.378,0.408]	chrX	780353	300	INTRON	INTRON	LINC01203	ENSG00000226985.7	ENST00000669963.1:ENST00000661545.1:ENST00000659526.1:ENST00000656410.1:ENST00000661104.1:ENST00000456091.2:ENST00000655502.1:ENST00000671651.1:ENST00000656979.1:ENST00000656271.1:ENST00000661629.1:ENST00000661464.1:ENST00000668192.1:ENST00000665887.1:ENST00000659191.1:ENST00000667868.1:ENST00000653729.1:ENST00000656111.1	lncRNA	lncRNA	lncRNA	lncRNA	8	111	2	2.27995	2.4003449999999997	2.52074	0.00388691	9.57797e-4	0.0544347	0.0284518
chr15	52023322	52023418	6029061	0	+	0.427083	(0.408,0.44]	chr15	574417	14	INTRON	INTRON	MAPK6	ENSG00000069956.14	ENST00000560802.1:ENST00000691380.1:ENST00000558063.5:ENST00000560254.1:ENST00000681888.1:ENST00000261845.7:ENST00000680066.1:ENST00000680777.1:ENST00000558100.1:ENST00000680652.1:ENST00000558841.1:ENST00000558891.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	16	143	2	1.16487	2.400315	3.63576	0.0358721	4.93942e-5	0.152322	0.00608708
chr3	17739928	17740026	1630407	0	-	0.428571	(0.408,0.44]	chr3	168278	7	UTR5	UTR5:EXON_MRNA:INTRON	TBC1D5	ENSG00000131374.15	ENST00000253692.11:ENST00000696125.1:ENST00000414318.2:ENST00000429383.8:ENST00000415814.6:ENST00000452492.6:ENST00000412981.5:ENST00000428355.5:ENST00000425944.5:ENST00000430169.5:ENST00000445294.5:ENST00000414349.5:ENST00000443499.6:ENST00000444756.5:ENST00000497531.5:ENST00000446863.5:ENST00000444471.5:ENST00000481396.5:ENST00000423331.6:ENST00000485432.1:ENST00000471679.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	68	2	2.30838	2.40028	2.49218	0.00855168	0.00547703	0.0780217	0.0671198
chr3	196068530	196068630	1897410	0	-	0.41	(0.408,0.44]	chr3	189950	4	SS3_PROX	SS3_PROX:INTRON	TFRC	ENSG00000072274.13	ENST00000420415.5:ENST00000360110.9:ENST00000392396.7:ENST00000491658.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	47	586	2	2.32198	2.40028	2.47858	1.48278e-4	4.66925e-6	0.0111296	0.00145119
chr5	28905720	28905820	2330807	0	+	0.5	(0.476,0.515]	chr5	225135	952	INTRON	INTRON	LINC02109	ENSG00000259786.7	ENST00000658190.1	lncRNA	lncRNA	lncRNA	lncRNA	4	59	2	2.06491	2.4002749999999997	2.73564	0.0304733	0.00333144	0.143385	0.0512081
chr4	94207672	94207735	1997505	0	+	0.349206	(0.32,0.35]	chr4	199378	2	UTR5	UTR5:EXON_MRNA	SMARCAD1	ENSG00000163104.18	ENST00000359052.8	protein_coding	protein_coding	protein_coding	protein_coding	6	75	2	1.72098	2.400165	3.07935	0.0192903	0.00724137	0.119831	0.0729826
chr22	16609468	16609567	7473435	0	+	0.616162	(0.57,1]	chr22	761972	69	INTRON	INTRON	TPTEP1:ENSG00000283633	ENSG00000100181.22:ENSG00000283633.1	ENST00000558085.6:ENST00000400593.6:ENST00000592918.5:ENST00000592107.5:ENST00000426585.5:ENST00000591299.1	lncRNA	lncRNA	lncRNA:transcribed_unprocessed_pseudogene	lncRNA:processed_transcript	32	207	2	2.37661	2.400055	2.4235	1.08718e-5	9.8253e-6	0.00260682	0.00227957
chr14	102609019	102609119	5822697	0	+	0.36	(0.35,0.378]	chr14	552490	153	INTRON	INTRON	RCOR1	ENSG00000089902.10	ENST00000262241.7	protein_coding	protein_coding	protein_coding	protein_coding	7	94	2	2.03655	2.4000399999999997	2.76353	0.00535994	0.00343059	0.0663076	0.0517761
chr17	31941678	31941776	6595723	0	+	0.479592	(0.476,0.515]	chr17	641548	8	INTRON	INTRON	SUZ12	ENSG00000178691.11	ENST00000322652.10:ENST00000580398.1	protein_coding	protein_coding	protein_coding	protein_coding	5	58	2	1.91368	2.39999	2.8863	0.0135123	0.0111679	0.101363	0.0877435
chr9	122373827	122373927	4194819	0	+	0.48	(0.476,0.515]	chr9	382725	16	INTRON	INTRON	PTGS1	ENSG00000095303.17	ENST00000643810.1:ENST00000540753.6:ENST00000645132.1:ENST00000362012.7:ENST00000647067.1:ENST00000619306.5:ENST00000426608.6:ENST00000223423.8:ENST00000643576.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	42	2	1.72558	2.3998999999999997	3.07422	0.0767648	0.00506023	0.196164	0.0646039
chr14	37161880	37161980	5877906	0	-	0.54	(0.515,0.57]	chr14	558013	2865	INTRON	INTRON	SLC25A21	ENSG00000183032.12	ENST00000331299.6:ENST00000555449.5:ENST00000557611.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	74	2	1.79285	2.39989	3.00693	0.0141154	7.26845e-4	0.0959618	0.0245647
chr7	107197317	107197414	3378654	0	+	0.391753	(0.378,0.408]	chr7	316368	3	INTRON	INTRON	HBP1	ENSG00000105856.14	ENST00000468410.5:ENST00000222574.9:ENST00000485846.5:ENST00000463202.5:ENST00000461963.1:ENST00000607681.1:ENST00000463790.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	61	2	2.0102	2.39983	2.78946	0.0158859	0.00940766	0.101453	0.0861183
chr1	28903295	28903394	58842	0	+	0.393939	(0.378,0.408]	chr1	7617	91	INTRON	INTRON	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000647918.1:ENST00000646800.1:ENST00000644342.1:ENST00000646189.1:ENST00000482464.6:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000646260.1:ENST00000373798.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	13	173	2	2.36141	2.399765	2.43812	0.0015918	1.87445e-4	0.0364566	0.011951
chr8	38363472	38363572	3937237	0	-	0.52	(0.515,0.57]	chr8	360828	2	SS5_PROX	SS5_PROX:INTRON	NSD3	ENSG00000147548.17	ENST00000317025.13:ENST00000433384.6:ENST00000527502.5:ENST00000316985.7:ENST00000529223.1:ENST00000534155.1:ENST00000534539.1	protein_coding	protein_coding	protein_coding	protein_coding	4	49	2	2.01737	2.399725	2.78208	0.0352218	0.00209264	0.137535	0.0424943
chr4	10095261	10095352	2107205	0	-	0.32967	(0.32,0.35]	chr4	208459	5	INTRON	INTRON	WDR1	ENSG00000071127.17	ENST00000499869.7:ENST00000382451.6:ENST00000382452.6:ENST00000502702.5:ENST00000505543.5:ENST00000508949.5:ENST00000510848.5:ENST00000508079.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	126	2	1.85014	2.39972	2.9493	0.0119731	5.42962e-4	0.0962115	0.0215026
chr20	62936795	62936895	7362559	0	-	0.49	(0.476,0.515]	chr20	751216	76	INTRON	INTRON	DIDO1	ENSG00000101191.17	ENST00000266070.8:ENST00000370371.8	protein_coding	protein_coding	protein_coding	protein_coding	14	189	2	2.26392	2.39971	2.5355	0.0010935	1.61877e-4	0.0302914	0.0116382
chr14	23316839	23316939	5656902	0	+	0.44	(0.408,0.44]	chr14	539442	52	INTRON	INTRON	BCL2L2-PABPN1	ENSG00000258643.6	ENST00000678502.1:ENST00000553781.5:ENST00000557008.2	protein_coding	protein_coding	protein_coding	protein_coding	5	68	2	2.26617	2.39965	2.53313	0.00739595	0.00649402	0.074277	0.0734343
chr1	10109770	10109870	19905	0	+	0.48	(0.476,0.515]	chr1	1882	20	INTRON	INTRON	UBE4B	ENSG00000130939.20	ENST00000672724.1:ENST00000253251.12:ENST00000343090.11	protein_coding	protein_coding	protein_coding	protein_coding	3	42	2	1.99197	2.39963	2.80729	0.039572	0.0126008	0.143072	0.0980703
chr10	96067984	96068083	4673503	0	-	0.484848	(0.476,0.515]	chr10	430643	247	INTRON	INTRON	ENTPD1-AS1	ENSG00000226688.8	ENST00000669711.1:ENST00000416301.5:ENST00000451364.5:ENST00000671323.1:ENST00000656604.1:ENST00000452728.5:ENST00000684888.1:ENST00000454638.5:ENST00000668038.1:ENST00000686747.1:ENST00000693608.1:ENST00000458228.5:ENST00000691417.1:ENST00000427846.1	lncRNA	lncRNA	lncRNA	lncRNA	3	42	2	1.99197	2.39963	2.80729	0.039572	0.0126008	0.143072	0.0980703
chr21	38116411	38116511	7464050	0	-	0.24	[0,0.28]	chr21	760303	167	INTRON	INTRON	DSCR4	ENSG00000184029.9	ENST00000398948.5:ENST00000328264.7:ENST00000482032.1	lncRNA	lncRNA	lncRNA	lncRNA	3	61	2	2.38757	2.39963	2.41169	0.0552962	0.0122872	0.165463	0.0970106
chr3	47735533	47735633	1684609	0	-	0.51	(0.476,0.515]	chr3	172095	1	SS5_PROX	SS5_PROX:INTRON	SMARCC1	ENSG00000173473.11	ENST00000254480.10:ENST00000425518.5:ENST00000485833.1:ENST00000454240.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	42	2	1.99197	2.39963	2.80729	0.039572	0.0126008	0.143072	0.0980703
chr8	92819145	92819245	3990297	0	-	0.28	[0,0.28]	chr8	365358	327	INTRON	INTRON	FLJ46284	ENSG00000248858.7	ENST00000504861.2	lncRNA	lncRNA	lncRNA	lncRNA	3	61	2	2.38757	2.39963	2.41169	0.0552962	0.0122872	0.165463	0.0970106
chrX	101049450	101049550	7855258	0	-	0.48	(0.476,0.515]	chrX	800835	54	INTRON	INTRON	TRMT2B:TRMT2B-AS1	ENSG00000188917.15:ENSG00000225839.2	ENST00000545398.5:ENST00000372936.4:ENST00000372939.5:ENST00000372935.5:ENST00000478422.1:ENST00000443801.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA:processed_transcript	3	42	2	1.99197	2.39963	2.80729	0.039572	0.0126008	0.143072	0.0980703
chrX	111718956	111719047	7702410	0	+	0.252747	[0,0.28]	chrX	788272	3	INTRON	INTRON	ALG13	ENSG00000101901.12	ENST00000394780.8:ENST00000251943.8:ENST00000610588.4:ENST00000621367.4:ENST00000624161.3:ENST00000636363.1:ENST00000495283.5:ENST00000623144.3:ENST00000470971.5:ENST00000623148.3:ENST00000436609.5:ENST00000623622.1:ENST00000490774.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	61	2	2.38757	2.39963	2.41169	0.0552962	0.0122872	0.165463	0.0970106
chr7	111366875	111366975	3622151	0	-	0.34	(0.32,0.35]	chr7	337093	4030	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	60	2	2.22655	2.39959	2.57263	0.0312297	0.00823133	0.13151	0.0812969
chr11	65199988	65200088	4804572	0	+	0.39	(0.378,0.408]	chr11	446277	109	INTRON	INTRON	CAPN1	ENSG00000014216.16	ENST00000533820.5:ENST00000533129.5:ENST00000524773.5:ENST00000279247.11:ENST00000527323.5:ENST00000533079.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	44	2	2.38873	2.3995499999999996	2.41037	0.0458857	0.0100185	0.149888	0.0880217
chr2	113924063	113924162	854587	0	+	0.484848	(0.476,0.515]	chr2	95910	67	INTRON	INTRON	ACTR3	ENSG00000115091.12	ENST00000443297.5:ENST00000263238.7:ENST00000415792.5:ENST00000446821.5:ENST00000535589.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	18	245	2	1.56606	2.399485	3.23291	0.0125626	7.50317e-7	0.0926667	4.86083e-4
chr7	116979952	116980052	3386251	0	+	0.5	(0.476,0.515]	chr7	317132	115	INTRON	INTRON	ST7:ST7-OT4	ENSG00000004866.22:ENSG00000214188.9	ENST00000393446.6:ENST00000265437.9:ENST00000393451.7:ENST00000438863.5:ENST00000393449.5:ENST00000443979.5:ENST00000323984.8:ENST00000417919.5:ENST00000446490.5:ENST00000471110.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:nonsense_mediated_decay:lncRNA	6	65	2	1.44826	2.399425	3.35059	0.0482164	0.00171515	0.153146	0.0381936
chr14	37159181	37159281	5877879	0	-	0.33	(0.32,0.35]	chr14	558013	2838	INTRON	INTRON	SLC25A21	ENSG00000183032.12	ENST00000331299.6:ENST00000555449.5:ENST00000557611.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	60	2	1.77409	2.399395	3.0247	0.0414296	0.00671684	0.146067	0.0738715
chr3	185923107	185923205	1886448	0	-	0.510204	(0.476,0.515]	chr3	188621	11	EXON_MRNA	EXON_MRNA:INTRON	TRA2B	ENSG00000136527.19	ENST00000453386.7:ENST00000492417.5:ENST00000463328.5:ENST00000259043.11:ENST00000487615.5:ENST00000466832.5:ENST00000456380.5:ENST00000382191.4:ENST00000465245.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	70	2	1.86014	2.399365	2.93859	0.0277606	0.00143107	0.137011	0.0340925
chr9	129499843	129499941	4209918	0	+	0.489796	(0.476,0.515]	chr9	385771	10	INTRON	INTRON	LINC00963	ENSG00000204054.14	ENST00000653047.1:ENST00000454968.5:ENST00000652803.1:ENST00000444184.6:ENST00000658785.1:ENST00000656664.1:ENST00000666282.1:ENST00000663727.1:ENST00000663000.1:ENST00000666041.1:ENST00000657306.1:ENST00000668074.1:ENST00000656234.1:ENST00000662331.1:ENST00000654822.1:ENST00000659188.1:ENST00000658175.1:ENST00000654204.1:ENST00000659535.1:ENST00000653700.1:ENST00000667047.1:ENST00000665998.1:ENST00000664811.1:ENST00000665880.1:ENST00000662047.1:ENST00000671609.1:ENST00000671555.1:ENST00000655787.1:ENST00000419300.3:ENST00000423918.5:ENST00000661101.1:ENST00000666559.1:ENST00000668919.1:ENST00000654131.1:ENST00000653386.1:ENST00000655962.1:ENST00000659690.1:ENST00000657389.1:ENST00000668206.1:ENST00000669088.1:ENST00000654286.1:ENST00000658999.1:ENST00000624138.4:ENST00000454635.6:ENST00000625171.4:ENST00000624390.1:ENST00000622972.3:ENST00000624009.3:ENST00000669210.1:ENST00000412141.2:ENST00000622680.2:ENST00000622120.2:ENST00000607931.1:ENST00000453213.2:ENST00000608272.2:ENST00000623185.4:ENST00000669939.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	5	70	2	1.86014	2.399365	2.93859	0.0277606	0.00143107	0.137011	0.0340925
chr20	3908170	3908270	7227086	0	+	0.44	(0.408,0.44]	chr20	734488	1	CDS_START	CDS_START:CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	PANK2	ENSG00000125779.24	ENST00000497424.5:ENST00000316562.9:ENST00000495692.5:ENST00000610179.7:ENST00000643504.2:ENST00000336066.8:ENST00000646394.1:ENST00000621507.1:ENST00000471830.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	42	2	2.21238	2.39931	2.58624	0.0273686	0.0193525	0.123904	0.119831
chr7	64924722	64924819	3321306	0	+	0.28866000000000003	(0.28,0.32]	chr7	308800	4	INTRON	INTRON	ZNF273	ENSG00000198039.12	ENST00000527278.5:ENST00000476120.2:ENST00000395375.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	75	2	1.57779	2.399265	3.22074	0.0502605	0.00362783	0.156383	0.055479
chr2	216505779	216505879	1016145	0	+	0.37	(0.35,0.378]	chr2	108187	18	INTRON	INTRON	RPL37A	ENSG00000197756.10	ENST00000600880.5:ENST00000446558.5:ENST00000598925.5:ENST00000427280.6:ENST00000441179.2	protein_coding	protein_coding	protein_coding	protein_coding	8	104	2	2.09944	2.39924	2.69904	0.00438476	0.00266508	0.0585064	0.0476626
chr1	15532645	15532745	32856	0	+	0.41	(0.408,0.44]	chr1	3981	30	INTRON	INTRON	DNAJC16	ENSG00000116138.13	ENST00000375849.5:ENST00000475133.5:ENST00000616884.4:ENST00000375838.5:ENST00000375847.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	42	2	2.07919	2.39915	2.71911	0.0291499	0.0189489	0.14147	0.108861
chr1	153915539	153915639	557693	0	-	0.44	(0.408,0.44]	chr1	66001	4	INTRON	INTRON	GATAD2B	ENSG00000143614.10	ENST00000368655.5:ENST00000634544.1:ENST00000634408.1:ENST00000634401.1:ENST00000634791.1:ENST00000637331.1:ENST00000636008.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	42	2	2.07919	2.39915	2.71911	0.0291499	0.0189489	0.14147	0.108861
chr14	30971699	30971799	5857326	0	-	0.43	(0.408,0.44]	chr14	556508	73	INTRON	INTRON	STRN3	ENSG00000196792.12	ENST00000355683.9:ENST00000357479.10:ENST00000555358.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	42	2	2.07919	2.39915	2.71911	0.0291499	0.0189489	0.14147	0.108861
chr2	235547333	235547433	1041870	0	+	0.43	(0.408,0.44]	chr2	111222	224	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1:ENST00000402604.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	42	2	2.07919	2.39915	2.71911	0.0291499	0.0189489	0.14147	0.108861
chr3	36986530	36986629	1655294	0	-	0.515152	(0.476,0.515]	chr3	169856	16	UTR3	UTR3:EXON_MRNA	EPM2AIP1	ENSG00000178567.8	ENST00000322716.8	protein_coding	protein_coding	protein_coding	protein_coding	12	154	2	1.93153	2.399095	2.86666	0.00477798	6.24866e-5	0.0602209	0.00657765
chr6	35876037	35876137	3088366	0	-	0.27	[0,0.28]	chr6	288860	13	INTRON	INTRON	SRPK1	ENSG00000096063.16	ENST00000373825.7:ENST00000423325.6:ENST00000346162.10:ENST00000361690.7:ENST00000510290.5:ENST00000373821.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	73	2	2.06426	2.39905	2.73384	0.0246308	0.0168952	0.12011	0.110899
chr3	185799665	185799765	1886095	0	-	0.5	(0.476,0.515]	chr3	188573	1010	INTRON	INTRON	IGF2BP2	ENSG00000073792.16	ENST00000382199.7:ENST00000346192.7:ENST00000457616.6:ENST00000421047.3:ENST00000461957.5:ENST00000493302.5:ENST00000466476.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	154	2	2.1174	2.399045	2.68069	0.00203651	1.91269e-4	0.04086	0.0120386
chr1	20753274	20753373	389518	0	-	0.323232	(0.32,0.35]	chr1	46531	30	INTRON	INTRON	HP1BP3	ENSG00000127483.19	ENST00000438032.6:ENST00000312239.10:ENST00000375003.6:ENST00000419948.5	protein_coding	protein_coding	protein_coding	protein_coding	2	36	2	2.23182	2.399	2.56618	0.068598	0.0274185	0.184298	0.136498
chr11	44208158	44208258	4782532	0	+	0.34	(0.32,0.35]	chr11	442219	8	INTRON	INTRON	EXT2	ENSG00000151348.16	ENST00000682993.1:ENST00000684533.1:ENST00000683000.1:ENST00000533608.7:ENST00000395673.8:ENST00000684039.1:ENST00000682815.1:ENST00000682359.1:ENST00000358681.8:ENST00000683870.1:ENST00000684124.1:ENST00000343631.4:ENST00000682711.1:ENST00000683881.1:ENST00000682947.1:ENST00000683299.1:ENST00000683204.1:ENST00000528159.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	36	2	2.23182	2.399	2.56618	0.068598	0.0274185	0.184298	0.136498
chr12	62291583	62291682	5149861	0	+	0.323232	(0.32,0.35]	chr12	487287	125	INTRON	INTRON	USP15	ENSG00000135655.16	ENST00000353364.7:ENST00000549523.5:ENST00000550632.5:ENST00000312635.10:ENST00000548524.5:ENST00000280377.10:ENST00000551206.5:ENST00000546718.5:ENST00000537297.2:ENST00000549237.5:ENST00000548836.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	36	2	2.23182	2.399	2.56618	0.068598	0.0274185	0.184298	0.136498
chr6	24705743	24705841	3070587	0	-	0.377551	(0.35,0.378]	chr6	285341	10	UTR3	UTR3:EXON_MRNA	C6orf62	ENSG00000112308.13	ENST00000378119.9	protein_coding	protein_coding	protein_coding	protein_coding	14	192	2	2.06159	2.39899	2.73639	0.00127585	2.81585e-4	0.0331897	0.0154515
chr9	130784553	130784653	4214570	0	+	0.57	(0.515,0.57]	chr9	386427	697	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000393293.4	protein_coding	protein_coding	protein_coding	protein_coding	13	134	2	1.84737	2.398985	2.9506	0.00308996	9.37882e-5	0.0510878	0.00860621
chr2	275895	275992	685554	0	+	0.237113	[0,0.28]	chr2	80430	3	INTRON	INTRON	ACP1	ENSG00000143727.16	ENST00000272067.10:ENST00000413140.5:ENST00000442386.5:ENST00000272065.10:ENST00000453390.5:ENST00000484464.5:ENST00000463831.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	99	2	2.22743	2.3989599999999998	2.57049	0.00973452	0.0097118	0.0875962	0.0832222
chr21	39228991	39229082	7464672	0	-	0.351648	(0.35,0.378]	chr21	760444	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	BRWD1	ENSG00000185658.14	ENST00000333229.6:ENST00000342449.8:ENST00000446924.5:ENST00000380800.7:ENST00000424441.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	74	2	2.36677	2.398925	2.43108	0.0139343	0.00345501	0.0957526	0.0539802
chr1	244657120	244657220	347751	0	+	0.4	(0.378,0.408]	chr1	40357	7	INTRON	INTRON	DESI2	ENSG00000121644.19	ENST00000263831.11:ENST00000302550.16:ENST00000418162.1	protein_coding	protein_coding	protein_coding	protein_coding	3	44	2	1.89621	2.3989149999999997	2.90162	0.0488044	0.0113157	0.173377	0.0886121
chr3	186969889	186969989	1586570	0	+	0.4	(0.378,0.408]	chr3	164332	56	INTRON	INTRON	ST6GAL1	ENSG00000073849.16	ENST00000676786.1:ENST00000169298.8:ENST00000457772.6:ENST00000455441.5:ENST00000427315.5:ENST00000677292.1:ENST00000458216.5:ENST00000430309.5:ENST00000417392.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	44	2	1.89621	2.3989149999999997	2.90162	0.0488044	0.0113157	0.173377	0.0886121
chr4	55876622	55876721	1961421	0	+	0.383838	(0.378,0.408]	chr4	196637	43	INTRON	INTRON	EXOC1	ENSG00000090989.18	ENST00000381295.7:ENST00000346134.11:ENST00000349598.6	protein_coding	protein_coding	protein_coding	protein_coding	3	44	2	1.89621	2.3989149999999997	2.90162	0.0488044	0.0113157	0.173377	0.0886121
chr1	22061639	22061736	42291	0	+	0.494845	(0.476,0.515]	chr1	5076	16	INTRON	INTRON	ENSG00000289694:CDC42:CDC42-IT1	ENSG00000289694.1:ENSG00000070831.18:ENSG00000230068.2	ENST00000695855.1:ENST00000695856.1:ENST00000344548.8:ENST00000400259.5:ENST00000667384.2:ENST00000411827.2:ENST00000695858.1:ENST00000695857.1:ENST00000315554.14:ENST00000695859.1:ENST00000498236.1:ENST00000656825.1:ENST00000651171.1:ENST00000652582.1:ENST00000695860.1:ENST00000695796.1:ENST00000695797.1:ENST00000662562.2:ENST00000695798.1:ENST00000431803.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:nonsense_mediated_decay:lncRNA	4	56	2	2.16377	2.398865	2.63396	0.0243026	0.00426634	0.12011	0.0596808
chr16	85476699	85476799	6414597	0	+	0.51	(0.476,0.515]	chr16	615465	1174	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	7	93	2	2.17892	2.398815	2.61871	0.0046578	0.00174257	0.0629753	0.0375363
chr20	35456736	35456833	7261997	0	+	0.453608	(0.44,0.476]	chr20	737775	6	INTRON	INTRON	CEP250	ENSG00000126001.16	ENST00000446710.5:ENST00000420564.5:ENST00000476146.5:ENST00000461386.5:ENST00000397527.6:ENST00000397524.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	42	2	1.83899	2.398795	2.9586	0.0589734	0.00758318	0.167915	0.0773151
chr1	22095195	22095295	42644	0	+	0.38	(0.378,0.408]	chr1	5130	38	UTR3	UTR3:EXON_MRNA	CDC42	ENSG00000070831.18	ENST00000656825.1	protein_coding	protein_coding	protein_coding	protein_coding	2	33	2	2.26252	2.3987749999999997	2.53503	0.056222	0.0319942	0.18407	0.13174
chr17	3809248	3809348	6707823	0	-	0.4	(0.378,0.408]	chr17	656962	72	UTR3	UTR3:EXON_MRNA	NCBP3	ENSG00000074356.17	ENST00000389005.6	protein_coding	protein_coding	protein_coding	protein_coding	2	33	2	2.26252	2.3987749999999997	2.53503	0.056222	0.0319942	0.18407	0.13174
chr17	74205087	74205186	6672388	0	+	0.383838	(0.378,0.408]	chr17	651049	10	EXON_MRNA	EXON_MRNA:INTRON	RPL38	ENSG00000172809.13	ENST00000439590.6:ENST00000530646.1:ENST00000311111.11:ENST00000584577.5:ENST00000534490.5:ENST00000533498.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	33	2	2.26252	2.3987749999999997	2.53503	0.056222	0.0319942	0.18407	0.13174
chr22	21922397	21922496	7561418	0	-	0.575758	(0.57,1]	chr22	773394	31	UTR3	UTR3:EXON_MRNA	PPM1F	ENSG00000100034.14	ENST00000263212.10:ENST00000407142.5	protein_coding	protein_coding	protein_coding	protein_coding	23	149	2	2.15332	2.3987600000000002	2.6442	1.36819e-4	8.33794e-6	0.0100759	0.00219713
chr1	222655976	222656073	319754	0	+	0.556701	(0.515,0.57]	chr1	36701	8	INTRON	INTRON	MIA3	ENSG00000154305.18	ENST00000344922.10:ENST00000340535.11	protein_coding	protein_coding	protein_coding	protein_coding	3	36	2	2.1885	2.398745	2.60899	0.0232669	0.0202537	0.121364	0.118148
chr10	124769792	124769892	4712324	0	-	0.55	(0.515,0.57]	chr10	434810	38	INTRON	INTRON	EEF1AKMT2	ENSG00000203791.15	ENST00000652548.1:ENST00000466270.5:ENST00000368836.7:ENST00000464099.5:ENST00000498770.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	36	2	2.1885	2.398745	2.60899	0.0232669	0.0202537	0.121364	0.118148
chr21	45277682	45277773	7469277	0	-	0.538462	(0.515,0.57]	chr21	761285	4	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	POFUT2	ENSG00000186866.17	ENST00000331343.11:ENST00000334538.13:ENST00000471540.5:ENST00000612472.4:ENST00000349485.10:ENST00000451615.1:ENST00000493524.5:ENST00000468360.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	36	2	2.1885	2.398745	2.60899	0.0232669	0.0202537	0.121364	0.118148
chrX	119602564	119602663	7873080	0	-	0.525253	(0.515,0.57]	chrX	801774	96	INTRON	INTRON	NKRF	ENSG00000186416.18	ENST00000304449.8:ENST00000542113.3:ENST00000688521.1	protein_coding	protein_coding	protein_coding	protein_coding	3	36	2	2.1885	2.398745	2.60899	0.0232669	0.0202537	0.121364	0.118148
chr1	24672584	24672684	46053	0	+	0.29	(0.28,0.32]	chr1	5759	4	UTR3	UTR3:EXON_MRNA	SRRM1	ENSG00000133226.18	ENST00000374389.8:ENST00000323848.14	protein_coding	protein_coding	protein_coding	protein_coding	54	884	2	2.20417	2.398695	2.59322	3.66114e-4	7.32991e-6	0.0177716	0.00192248
chr10	73047896	73047994	4647349	0	-	0.520408	(0.515,0.57]	chr10	427518	4	INTRON	INTRON	P4HA1	ENSG00000122884.13	ENST00000394890.7:ENST00000307116.6:ENST00000373008.6:ENST00000440381.5:ENST00000263556.3	protein_coding	protein_coding	protein_coding	protein_coding	3	36	2	2.03361	2.398575	2.76354	0.0325854	0.0147344	0.145164	0.0983813
chr2	68190385	68190485	1145900	0	-	0.54	(0.515,0.57]	chr2	122389	13	INTRON	INTRON	PPP3R1	ENSG00000221823.11	ENST00000234310.8:ENST00000409752.5:ENST00000409377.1	protein_coding	protein_coding	protein_coding	protein_coding	3	36	2	2.03361	2.398575	2.76354	0.0325854	0.0147344	0.145164	0.0983813
chr1	65633660	65633758	139348	0	+	0.336735	(0.32,0.35]	chr1	15613	6	UTR3	UTR3:EXON_MRNA:INTRON	LEPR	ENSG00000116678.20	ENST00000371060.7:ENST00000349533.11:ENST00000616738.4	protein_coding	protein_coding	protein_coding	protein_coding	3	49	2	1.88909	2.398475	2.90786	0.0553737	0.00993008	0.165463	0.0877296
chr17	51034493	51034592	6796146	0	-	0.373737	(0.35,0.378]	chr17	670990	24	INTRON	INTRON	SPAG9	ENSG00000008294.22	ENST00000262013.12:ENST00000510283.5:ENST00000505279.5:ENST00000357122.8:ENST00000514613.5:ENST00000505173.5:ENST00000576492.1:ENST00000510855.1:ENST00000511987.5:ENST00000502329.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	34	2	2.39746	2.398425	2.39939	0.0458078	0.041314	0.161534	0.149888
chr19	18513922	18514022	7152933	0	-	0.37	(0.35,0.378]	chr19	722886	381	INTRON	INTRON	ELL	ENSG00000105656.13	ENST00000262809.9:ENST00000594635.6:ENST00000596915.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	34	2	2.39746	2.398425	2.39939	0.0458078	0.041314	0.161534	0.149888
chr2	187516017	187516116	1289138	0	-	0.373737	(0.35,0.378]	chr2	135608	25	EXON_MRNA	EXON_MRNA:INTRON	TFPI	ENSG00000003436.16	ENST00000233156.9:ENST00000481132.5:ENST00000409676.5:ENST00000339091.8:ENST00000421427.5:ENST00000437725.5:ENST00000453013.5:ENST00000417013.5:ENST00000420747.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	34	2	2.39746	2.398425	2.39939	0.0458078	0.041314	0.161534	0.149888
chr7	32872838	32872935	3515431	0	-	0.360825	(0.35,0.378]	chr7	327768	16	INTRON	INTRON	KBTBD2	ENSG00000170852.12	ENST00000304056.9:ENST00000485611.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	34	2	2.39746	2.398425	2.39939	0.0458078	0.041314	0.161534	0.149888
chr16	27463864	27463955	6466381	0	-	0.516484	(0.515,0.57]	chr16	624235	4	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GTF3C1	ENSG00000077235.18	ENST00000356183.9:ENST00000561623.5:ENST00000569653.1:ENST00000562609.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	37	2	2.34087	2.39836	2.45585	0.0469761	0.00797827	0.151917	0.0798772
chr3	9421378	9421478	1359123	0	+	0.52	(0.515,0.57]	chr3	142661	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	SETD5	ENSG00000168137.20	ENST00000402198.7:ENST00000431285.5:ENST00000683012.1:ENST00000463180.5:ENST00000478475.5:ENST00000415650.5:ENST00000682536.1:ENST00000663774.1:ENST00000665872.1:ENST00000666307.1:ENST00000693430.1:ENST00000691925.1:ENST00000684606.1:ENST00000691175.1:ENST00000688835.1:ENST00000683262.1:ENST00000443339.5:ENST00000406341.5:ENST00000670063.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	37	2	2.34087	2.39836	2.45585	0.0469761	0.00797827	0.151917	0.0798772
chr19	36744574	36744673	7175581	0	-	0.444444	(0.44,0.476]	chr19	725125	12	UTR3	UTR3:EXON_MRNA:INTRON	ZNF850	ENSG00000267041.6	ENST00000589390.5:ENST00000614887.4:ENST00000591344.2	protein_coding	protein_coding	protein_coding	protein_coding	3	43	2	2.29842	2.398325	2.49823	0.0552483	0.00718224	0.165463	0.0756118
chr16	215559	215658	6426049	0	-	0.434343	(0.408,0.44]	chr16	617437	59	INTRON	INTRON	LUC7L	ENSG00000007392.17	ENST00000337351.8:ENST00000426094.5:ENST00000397783.5:ENST00000629543.2:ENST00000490762.5:ENST00000293872.13:ENST00000419516.5:ENST00000397780.5:ENST00000418978.5:ENST00000430864.5:ENST00000443357.5:ENST00000494366.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	105	2	1.70477	2.3981649999999997	3.09156	0.0215835	1.16526e-4	0.114814	0.00929374
chr1	175004015	175004113	265579	0	+	0.285714	(0.28,0.32]	chr1	30984	31	INTRON	INTRON	CACYBP	ENSG00000116161.18	ENST00000613570.4:ENST00000426793.1:ENST00000461977.1:ENST00000483307.1:ENST00000367679.7:ENST00000473925.1:ENST00000406752.1:ENST00000405362.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	39	2	2.18975	2.398155	2.60656	0.0776042	0.0256827	0.196285	0.133676
chr15	101286731	101286819	6269954	0	-	0.284091	(0.28,0.32]	chr15	598002	6	EXON_MRNA	EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SNRPA1	ENSG00000131876.18	ENST00000254193.11:ENST00000558036.5:ENST00000559309.5:ENST00000560433.5:ENST00000394082.8:ENST00000540017.6:ENST00000560496.5:ENST00000559686.3:ENST00000560383.5:ENST00000558059.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	39	2	2.18975	2.398155	2.60656	0.0776042	0.0256827	0.196285	0.133676
chr18	26089457	26089557	6959731	0	-	0.31	(0.28,0.32]	chr18	688515	3	SS5_PROX	SS5_PROX:INTRON	SS18	ENSG00000141380.14	ENST00000415083.7:ENST00000542420.6:ENST00000579640.5:ENST00000269138.9:ENST00000269137.11:ENST00000585121.5:ENST00000539244.6:ENST00000585241.5:ENST00000578954.5:ENST00000579061.5:ENST00000577636.5:ENST00000584083.5:ENST00000578700.5:ENST00000582792.5:ENST00000581021.5:ENST00000577572.5:ENST00000582448.5:ENST00000581570.5:ENST00000577751.5:ENST00000580751.5:ENST00000580642.2:ENST00000578595.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	39	2	2.18975	2.398155	2.60656	0.0776042	0.0256827	0.196285	0.133676
chr4	82882440	82882539	2180022	0	-	0.313131	(0.28,0.32]	chr4	214408	1	INTRON	INTRON	SEC31A	ENSG00000138674.17	ENST00000395310.7:ENST00000513858.5:ENST00000348405.8:ENST00000448323.5:ENST00000311785.11:ENST00000509142.5:ENST00000443462.6:ENST00000355196.6:ENST00000508502.5:ENST00000505984.5:ENST00000508479.5:ENST00000436790.6:ENST00000503058.5:ENST00000507816.5:ENST00000514326.5:ENST00000513323.5:ENST00000511975.5:ENST00000507340.5:ENST00000507867.5:ENST00000506497.5:ENST00000510310.1:ENST00000503210.5:ENST00000505434.5:ENST00000507676.5:ENST00000506495.5:ENST00000507051.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	39	2	2.18975	2.398155	2.60656	0.0776042	0.0256827	0.196285	0.133676
chr4	110060453	110060553	2226350	0	-	0.31	(0.28,0.32]	chr4	218012	3	INTRON	INTRON	ELOVL6	ENSG00000170522.10	ENST00000394607.7:ENST00000302274.8:ENST00000514184.5:ENST00000506625.5:ENST00000506461.1:ENST00000503885.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	39	2	2.18975	2.398155	2.60656	0.0776042	0.0256827	0.196285	0.133676
chr4	150919511	150919609	2270810	0	-	0.306122	(0.28,0.32]	chr4	220905	24	INTRON	INTRON	LRBA	ENSG00000198589.14	ENST00000357115.9:ENST00000651943.2:ENST00000510413.5:ENST00000651035.1:ENST00000507224.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	39	2	2.18975	2.398155	2.60656	0.0776042	0.0256827	0.196285	0.133676
chr4	2397449	2397549	2099519	0	-	0.41	(0.408,0.44]	chr4	207734	327	INTRON	INTRON	ZFYVE28	ENSG00000159733.14	ENST00000290974.7:ENST00000511071.5:ENST00000509171.5:ENST00000503000.1:ENST00000508184.5	protein_coding	protein_coding	protein_coding	protein_coding	7	95	2	2.12303	2.3981399999999997	2.67325	0.00586883	0.00143252	0.0690758	0.0340925
chr17	81691932	81692022	6691098	0	+	0.677778	(0.57,1]	chr17	654068	5	EXON_MRNA	EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HGS	ENSG00000185359.14	ENST00000677161.1:ENST00000678096.1:ENST00000679191.1:ENST00000676546.1:ENST00000678387.1:ENST00000677109.1:ENST00000677484.1:ENST00000678115.1:ENST00000677243.1:ENST00000677044.1:ENST00000679336.1:ENST00000678196.1:ENST00000676462.1:ENST00000678105.1:ENST00000676478.1:ENST00000329138.9:ENST00000677225.1:ENST00000678866.1:ENST00000679275.1:ENST00000678541.1:ENST00000676729.1:ENST00000572392.2:ENST00000678846.1:ENST00000678658.1:ENST00000678893.1:ENST00000677818.1:ENST00000678313.1:ENST00000573080.1:ENST00000679168.1:ENST00000677463.1:ENST00000677872.1:ENST00000678218.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	31	2	1.79898	2.398135	2.99729	0.0206524	0.00538023	0.122348	0.0642754
chr11	65198695	65198795	4804559	0	+	0.44	(0.408,0.44]	chr11	446277	96	INTRON	INTRON	CAPN1	ENSG00000014216.16	ENST00000533820.5:ENST00000533129.5:ENST00000524773.5:ENST00000279247.11:ENST00000527323.5:ENST00000533079.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	82	2	2.33039	2.39813	2.46587	0.00598147	0.00280622	0.0674604	0.0488779
chr21	28960343	28960416	7436355	0	-	0.246575	[0,0.28]	chr21	758370	3	SS5_PROX	SS5_PROX:INTRON	LTN1	ENSG00000198862.14	ENST00000614971.4:ENST00000389194.7:ENST00000361371.10:ENST00000475344.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	60	2	2.20073	2.398105	2.59548	0.0346067	0.0235708	0.136649	0.128907
chr7	76600399	76600499	3340872	0	+	0.31	(0.28,0.32]	chr7	311170	485	INTRON	INTRON	ENSG00000205485	ENSG00000205485.13	ENST00000418663.5:ENST00000450661.1:ENST00000423084.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	7	111	2	1.73523	2.398085	3.06094	0.0234982	8.54457e-4	0.118716	0.0265194
chr1	203020948	203021048	295392	0	+	0.33	(0.32,0.35]	chr1	33976	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	TMEM183A	ENSG00000163444.12	ENST00000367242.4	protein_coding	protein_coding	protein_coding	protein_coding	4	59	2	2.10695	2.39808	2.68921	0.0230336	0.0127483	0.118056	0.0987441
chr1	70277443	70277543	480088	0	-	0.3	(0.28,0.32]	chr1	57720	2	INTRON	INTRON	ANKRD13C	ENSG00000118454.13	ENST00000370944.9:ENST00000262346.6	protein_coding	protein_coding	protein_coding	protein_coding	2	39	2	2.2609	2.39806	2.53522	0.0671429	0.0310424	0.183051	0.143457
chr1	96731275	96731375	168036	0	+	0.31	(0.28,0.32]	chr1	18215	73	INTRON	INTRON	PTBP2	ENSG00000117569.19	ENST00000482253.5:ENST00000675735.1:ENST00000609116.5:ENST00000674951.1:ENST00000675080.1:ENST00000426398.3:ENST00000460706.5:ENST00000370197.5:ENST00000370198.5:ENST00000476419.5:ENST00000676292.1:ENST00000676096.1:ENST00000675365.1:ENST00000674579.1:ENST00000675401.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	39	2	2.2609	2.39806	2.53522	0.0671429	0.0310424	0.183051	0.143457
chr10	87766994	87767083	4662060	0	-	0.280899	(0.28,0.32]	chr10	429555	2	INTRON	INTRON	ATAD1	ENSG00000138138.14	ENST00000680024.1:ENST00000308448.11:ENST00000681308.1:ENST00000328142.3:ENST00000681602.1:ENST00000680388.1:ENST00000681629.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	39	2	2.2609	2.39806	2.53522	0.0671429	0.0310424	0.183051	0.143457
chr10	94352795	94352895	4665993	0	-	0.31	(0.28,0.32]	chr10	430059	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NOC3L	ENSG00000173145.11	ENST00000371361.3:ENST00000463649.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	39	2	2.2609	2.39806	2.53522	0.0671429	0.0310424	0.183051	0.143457
chr6	167908952	167909049	3035171	0	+	0.257732	[0,0.28]	chr6	282785	13	INTRON	INTRON	AFDN	ENSG00000130396.21	ENST00000683244.1:ENST00000351017.9:ENST00000344191.8:ENST00000392112.5:ENST00000392108.7:ENST00000400822.7:ENST00000447894.6:ENST00000366809.6:ENST00000366806.6:ENST00000423229.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	62	2	2.27119	2.39804	2.52489	0.070351	0.0084136	0.184298	0.082518
chr4	169697188	169697279	2080652	0	+	0.351648	(0.35,0.378]	chr4	205659	1	CDS	CDS:EXON_MRNA	CLCN3	ENSG00000109572.15	ENST00000347613.8:ENST00000360642.7:ENST00000513761.6:ENST00000613795.4:ENST00000507875.5:ENST00000515420.1	protein_coding	protein_coding	protein_coding	protein_coding	5	64	2	2.01378	2.39795	2.78212	0.0168532	0.00952336	0.103549	0.0863913
chr6	15297431	15297530	2823460	0	+	0.353535	(0.35,0.378]	chr6	265190	481	INTRON	INTRON	JARID2	ENSG00000008083.14	ENST00000341776.7:ENST00000397311.4	protein_coding	protein_coding	protein_coding	protein_coding	10	134	2	1.76452	2.39795	3.03138	0.0109566	1.86201e-4	0.0873179	0.0119078
chr16	89889027	89889127	6422595	0	+	0.62	(0.57,1]	chr16	616747	4	SS3_PROX	SS3_PROX:INTRON	TCF25	ENSG00000141002.20	ENST00000640279.1:ENST00000263347.11:ENST00000263346.13:ENST00000561958.5:ENST00000614813.4:ENST00000565196.5:ENST00000564652.5:ENST00000568412.5:ENST00000566751.5:ENST00000562256.5:ENST00000568409.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	31	2	1.52818	2.39789	3.2676	0.0508101	0.00176203	0.175989	0.0376652
chr22	20110304	20110402	7478548	0	+	0.602041	(0.57,1]	chr22	762762	3	UTR3	UTR3:EXON_MRNA	DGCR8	ENSG00000128191.16	ENST00000383024.6:ENST00000351989.8:ENST00000495826.5:ENST00000407755.1:ENST00000498171.5:ENST00000475941.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	31	2	1.52818	2.39789	3.2676	0.0508101	0.00176203	0.175989	0.0376652
chr7	148859203	148859303	3670512	0	-	0.51	(0.476,0.515]	chr7	340628	115	INTRON	INTRON	EZH2	ENSG00000106462.12	ENST00000683292.1:ENST00000320356.7:ENST00000492143.5:ENST00000478654.5:ENST00000350995.6:ENST00000460911.5:ENST00000683744.1:ENST00000682317.1:ENST00000682263.1:ENST00000684300.1:ENST00000476773.5:ENST00000483967.5:ENST00000498186.5:ENST00000483012.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	77	2	2.21313	2.39783	2.58253	0.00600101	0.00401502	0.0674604	0.0578059
chr7	127865512	127865612	3404547	0	+	0.3	(0.28,0.32]	chr7	318146	207	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000468166.5:ENST00000465900.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	70	2	2.2609	2.397825	2.53475	0.0671429	0.00257029	0.183051	0.0466761
chr5	127525519	127525619	2479875	0	+	0.38	(0.378,0.408]	chr5	236786	2	INTRON	INTRON	PRRC1	ENSG00000164244.21	ENST00000296666.13:ENST00000442138.6:ENST00000512635.2	protein_coding	protein_coding	protein_coding	protein_coding	4	60	2	1.88729	2.39782	2.90835	0.0532327	0.00133715	0.162538	0.0335955
chr7	98934000	98934098	3359832	0	+	0.397959	(0.378,0.408]	chr7	313502	2	INTRON	INTRON	TRRAP	ENSG00000196367.14	ENST00000355540.7:ENST00000359863.8:ENST00000628380.2:ENST00000456197.2:ENST00000446306.7	protein_coding	protein_coding	protein_coding	protein_coding	3	45	2	2.16303	2.3977500000000003	2.63247	0.0252473	0.0215745	0.123836	0.12011
chr9	137654928	137655028	4223835	0	+	0.42	(0.408,0.44]	chr9	388170	35	INTRON	INTRON	EHMT1	ENSG00000181090.21	ENST00000462484.5:ENST00000371394.6:ENST00000630754.2:ENST00000460843.6:ENST00000626216.2:ENST00000629335.2:ENST00000637335.1:ENST00000636376.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	58	2	1.55035	2.397725	3.2451	0.0455214	0.00337792	0.164236	0.0516884
chr11	95789035	95789124	5019606	0	-	0.561798	(0.515,0.57]	chr11	473627	2	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	FAM76B	ENSG00000077458.13	ENST00000358780.10:ENST00000398187.6:ENST00000543641.5:ENST00000536839.1:ENST00000545654.5:ENST00000540054.5:ENST00000542135.5:ENST00000538047.5:ENST00000538316.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	58	2	1.91916	2.39771	2.87626	0.0231902	0.00136224	0.118148	0.0339121
chr19	11110151	11110251	7017032	0	+	0.52	(0.515,0.57]	chr19	697453	1	SS3_PROX	SS3_PROX:INTRON	LDLR	ENSG00000130164.14	ENST00000557933.5:ENST00000558518.6:ENST00000545707.5:ENST00000535915.5:ENST00000455727.6:ENST00000558013.5:ENST00000252444.9:ENST00000560467.1	protein_coding	protein_coding	protein_coding	protein_coding	5	60	2	2.39351	2.397645	2.40178	0.0100431	0.00382306	0.0881096	0.0542786
chrX	154786900	154786998	7915417	0	-	0.397959	(0.378,0.408]	chrX	806147	1	INTRON	INTRON	MPP1	ENSG00000130830.15	ENST00000369534.8:ENST00000413259.7:ENST00000439370.5:ENST00000393531.5:ENST00000453245.5:ENST00000494170.1:ENST00000462825.5:ENST00000393529.5:ENST00000475943.5:ENST00000428488.1:ENST00000488754.5:ENST00000417435.5:ENST00000488694.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	46	2	2.13703	2.39759	2.65815	0.0797592	0.00391167	0.19979	0.0569957
chr11	61327297	61327393	4956447	0	-	0.552083	(0.515,0.57]	chr11	465747	4	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DDB1	ENSG00000167986.15	ENST00000301764.12:ENST00000680367.1:ENST00000681803.1:ENST00000680717.1:ENST00000679712.1:ENST00000680357.1:ENST00000680075.1:ENST00000679588.1:ENST00000680602.1:ENST00000680881.1:ENST00000681188.1:ENST00000535283.6:ENST00000681935.1:ENST00000680250.1:ENST00000540166.5:ENST00000679855.1:ENST00000681368.1:ENST00000543658.5:ENST00000545930.5:ENST00000681067.1:ENST00000680096.1:ENST00000543162.2:ENST00000537120.5:ENST00000539426.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	58	2	2.11384	2.39758	2.68132	0.0118599	0.00324198	0.0899583	0.0524329
chr6	2962620	2962711	3047640	0	-	0.351648	(0.35,0.378]	chr6	283589	2	INTRON	INTRON	SERPINB6	ENSG00000124570.21	ENST00000643098.1:ENST00000380546.7:ENST00000380539.7:ENST00000380529.5:ENST00000649845.1:ENST00000644178.1:ENST00000612421.3:ENST00000616722.4:ENST00000642543.1:ENST00000644388.1:ENST00000380520.6:ENST00000645580.1:ENST00000644693.1:ENST00000644828.1:ENST00000646775.1:ENST00000645421.1:ENST00000643227.1:ENST00000646688.1:ENST00000644777.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	89	2	2.29482	2.3975600000000004	2.5003	0.00743782	0.00256148	0.0746192	0.0466761
chr21	44045700	44045800	7415368	0	+	0.49	(0.476,0.515]	chr21	755795	74	INTRON	INTRON	TRAPPC10	ENSG00000160218.13	ENST00000291574.9:ENST00000380221.7:ENST00000422875.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	50	2	1.96833	2.3975299999999997	2.82673	0.0195007	0.0134403	0.119967	0.0946278
chr3	47658900	47659000	1683819	0	-	0.49	(0.476,0.515]	chr3	171996	198	INTRON	INTRON	SMARCC1	ENSG00000173473.11	ENST00000254480.10:ENST00000425518.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	50	2	1.96833	2.3975299999999997	2.82673	0.0195007	0.0134403	0.119967	0.0946278
chr19	909798	909897	7110904	0	-	0.484848	(0.476,0.515]	chr19	714174	68	INTRON	INTRON	R3HDM4	ENSG00000198858.10	ENST00000589428.5:ENST00000361574.10:ENST00000587975.2:ENST00000590454.2:ENST00000589445.1:ENST00000626716.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	126	2	1.15349	2.3974699999999998	3.64145	0.0516348	2.67082e-5	0.159145	0.00407562
chr7	140474191	140474280	3661581	0	-	0.494382	(0.476,0.515]	chr7	339937	4	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MKRN1	ENSG00000133606.11	ENST00000255977.7:ENST00000475010.5:ENST00000495305.5:ENST00000474576.5:ENST00000480552.5:ENST00000496169.5:ENST00000443720.6:ENST00000471104.5:ENST00000467513.5:ENST00000494939.1:ENST00000498535.1:ENST00000473444.1:ENST00000475180.5:ENST00000481705.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	81	2	2.13573	2.3974200000000003	2.65911	0.0119549	0.00116074	0.0899583	0.0314098
chr1	162580003	162580103	238505	0	+	0.49	(0.476,0.515]	chr1	28715	4	SS5_PROX	SS5_PROX:INTRON	UAP1	ENSG00000117143.14	ENST00000367925.6:ENST00000367926.9	protein_coding	protein_coding	protein_coding	protein_coding	4	50	2	1.74317	2.397345	3.05152	0.0396373	0.0064848	0.161534	0.0699952
chr2	151451405	151451505	893640	0	+	0.45	(0.44,0.476]	chr2	98977	4	SS3_PROX	SS3_PROX:INTRON	RIF1	ENSG00000080345.18	ENST00000453091.6:ENST00000428287.6:ENST00000444746.7:ENST00000243326.9:ENST00000414861.6:ENST00000430328.6	protein_coding	protein_coding	protein_coding	protein_coding	3	42	2	1.77101	2.397335	3.02366	0.0693975	0.00603307	0.184298	0.0700813
chr16	87832674	87832772	6538715	0	-	0.459184	(0.44,0.476]	chr16	633592	28	UTR3	UTR3:EXON_MRNA	SLC7A5	ENSG00000103257.9	ENST00000261622.5:ENST00000565644.5:ENST00000563489.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	70	2	1.57262	2.39727	3.22192	0.0230575	0.00360821	0.126603	0.0533855
chr22	41853141	41853241	7526198	0	+	0.48	(0.476,0.515]	chr22	769353	194	INTRON	INTRON	SREBF2	ENSG00000198911.12	ENST00000612482.4:ENST00000361204.9:ENST00000424354.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	104	2	1.69382	2.3972550000000004	3.10069	0.0219532	1.12565e-4	0.115201	0.0090528
chr5	119280601	119280701	2461716	0	+	0.47	(0.44,0.476]	chr5	235842	113	INTRON	INTRON	TNFAIP8	ENSG00000145779.8	ENST00000274456.6:ENST00000388882.5	protein_coding	protein_coding	protein_coding	protein_coding	3	42	2	1.9039	2.397185	2.89047	0.0501498	0.00955699	0.156383	0.0863913
chr6	79041243	79041343	3141708	0	-	0.47	(0.44,0.476]	chr6	292872	147	INTRON	INTRON	PHIP	ENSG00000146247.14	ENST00000275034.5	protein_coding	protein_coding	protein_coding	protein_coding	3	42	2	1.9039	2.397185	2.89047	0.0501498	0.00955699	0.156383	0.0863913
chr11	70275218	70275317	4820455	0	+	0.40404	(0.378,0.408]	chr11	449381	24	INTRON	INTRON	PPFIA1	ENSG00000131626.19	ENST00000253925.12:ENST00000389547.7:ENST00000532504.5:ENST00000530746.1:ENST00000532024.1:ENST00000648755.1:ENST00000644155.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	52	2	1.89251	2.397065	2.90162	0.0251428	0.0113157	0.133404	0.0886121
chr20	37049182	37049281	7339086	0	-	0.363636	(0.35,0.378]	chr20	747874	16	INTRON	INTRON	RBL1	ENSG00000080839.12	ENST00000373664.8:ENST00000344359.7	protein_coding	protein_coding	protein_coding	protein_coding	3	46	2	1.90405	2.39704	2.89003	0.0482651	0.0122391	0.171852	0.0910127
chr17	27097112	27097212	6579796	0	+	0.54	(0.515,0.57]	chr17	639586	3	INTRON	INTRON	ENSG00000285822	ENSG00000285822.1	ENST00000649401.1	lncRNA	lncRNA	lncRNA	lncRNA	8	80	2	1.73168	2.3970350000000002	3.06239	0.0119342	6.62949e-4	0.0962115	0.0234815
chr7	105051692	105051792	3374999	0	+	0.56	(0.515,0.57]	chr7	315877	103	INTRON	INTRON	KMT2E	ENSG00000005483.22	ENST00000622386.2:ENST00000257745.9:ENST00000334884.9:ENST00000311117.8:ENST00000478990.5:ENST00000495267.5:ENST00000476671.5:ENST00000667857.1:ENST00000474203.5:ENST00000482560.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	70	2	2.06758	2.3970000000000002	2.72642	0.0140038	7.31116e-4	0.0959618	0.0246497
chr10	78034421	78034521	4475877	0	+	0.4	(0.378,0.408]	chr10	411972	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	RPS24	ENSG00000138326.21	ENST00000613865.5:ENST00000435275.5:ENST00000645440.1:ENST00000440692.6:ENST00000360830.9:ENST00000372360.9:ENST00000464716.6:ENST00000485708.7:ENST00000478655.6:ENST00000645698.1:ENST00000476545.6:ENST00000466129.6:ENST00000465692.2:ENST00000475468.6:ENST00000482069.5:ENST00000646254.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	111	2	1.6165	2.396975	3.17745	0.0374185	1.31721e-4	0.155878	0.0104376
chrX	44958183	44958283	7649452	0	+	0.52	(0.515,0.57]	chrX	782726	838	INTRON	INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000675440.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000621147.5:ENST00000475233.1:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	88	2	2.25019	2.396955	2.54372	0.00205444	0.00169679	0.0409693	0.0381936
chr3	6540615	6540715	1356647	0	+	0.43	(0.408,0.44]	chr3	142508	275	INTRON	INTRON	ENSG00000189229	ENSG00000189229.12	ENST00000660158.1:ENST00000433639.1:ENST00000655754.1:ENST00000653839.1:ENST00000662846.1:ENST00000659876.1:ENST00000414438.2:ENST00000658468.1:ENST00000414603.1:ENST00000669512.1:ENST00000667028.1:ENST00000655541.1:ENST00000668643.1:ENST00000671568.1:ENST00000671036.1:ENST00000669798.1:ENST00000655753.1:ENST00000655856.1:ENST00000658398.1:ENST00000661518.1:ENST00000661279.1:ENST00000655495.1:ENST00000663041.1:ENST00000659827.1:ENST00000667716.1:ENST00000662508.1:ENST00000668416.1:ENST00000658133.1:ENST00000659651.1:ENST00000342990.4:ENST00000660054.1:ENST00000671370.1	lncRNA	lncRNA	lncRNA	lncRNA	12	158	2	2.34622	2.39686	2.4475	0.00101807	3.98022e-4	0.029231300000000002	0.0179298
chr1	8493065	8493165	370520	0	-	0.35	(0.32,0.35]	chr1	43466	267	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000377464.5:ENST00000400907.6:ENST00000656437.1:ENST00000464972.5:ENST00000659924.1:ENST00000480342.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	36	2	2.30673	2.39683	2.48693	0.0584434	0.0338094	0.167723	0.146709
chr1	112683935	112684035	186973	0	+	0.35	(0.32,0.35]	chr1	20706	68	INTRON	INTRON	MOV10	ENSG00000155363.19	ENST00000413052.6:ENST00000369645.6:ENST00000686097.1:ENST00000690243.1:ENST00000686428.1:ENST00000369644.5:ENST00000496577.5:ENST00000475429.5:ENST00000468624.5:ENST00000465579.1:ENST00000357443.2:ENST00000687509.1:ENST00000689955.1:ENST00000685268.1:ENST00000686923.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	36	2	2.30673	2.39683	2.48693	0.0584434	0.0338094	0.167723	0.146709
chr12	9440250	9440349	5265088	0	-	0.333333	(0.32,0.35]	chr12	501928	16	INTRON	INTRON	DDX12P	ENSG00000214826.5	ENST00000432996.2	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	2	36	2	2.30673	2.39683	2.48693	0.0584434	0.0338094	0.167723	0.146709
chr14	20474673	20474772	5656003	0	+	0.343434	(0.32,0.35]	chr14	539170	2	EXON_MRNA	EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PNP	ENSG00000198805.12	ENST00000361505.10:ENST00000557229.5:ENST00000554056.5:ENST00000553591.1:ENST00000554065.1:ENST00000556754.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	36	2	2.30673	2.39683	2.48693	0.0584434	0.0338094	0.167723	0.146709
chr18	26073910	26074009	6959560	0	-	0.333333	(0.32,0.35]	chr18	688461	50	INTRON	INTRON	SS18	ENSG00000141380.14	ENST00000415083.7:ENST00000542420.6:ENST00000579640.5:ENST00000269138.9:ENST00000269137.11:ENST00000585121.5:ENST00000539244.6:ENST00000585241.5:ENST00000578954.5:ENST00000579061.5:ENST00000577636.5:ENST00000584083.5:ENST00000578700.5:ENST00000582792.5:ENST00000581021.5:ENST00000577572.5:ENST00000582448.5:ENST00000581570.5:ENST00000577751.5:ENST00000580003.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	36	2	2.30673	2.39683	2.48693	0.0584434	0.0338094	0.167723	0.146709
chr3	49767897	49767996	1694697	0	-	0.343434	(0.32,0.35]	chr3	173818	191	INTRON	INTRON	IP6K1	ENSG00000176095.12	ENST00000321599.9:ENST00000395238.5:ENST00000613416.4:ENST00000468463.5:ENST00000460540.1:ENST00000498149.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	36	2	2.30673	2.39683	2.48693	0.0584434	0.0338094	0.167723	0.146709
chr9	120817124	120817222	4335486	0	-	0.285714	(0.28,0.32]	chr9	398271	12	UTR3	UTR3:EXON_MRNA:INTRON	PSMD5	ENSG00000095261.14	ENST00000373920.6:ENST00000210313.8	protein_coding	protein_coding	protein_coding	protein_coding	21	349	2	2.1530300000000002	2.3967650000000003	2.6405	0.00184561	3.20879e-5	0.0388609	0.00452256
chr6	89809137	89809237	3161933	0	-	0.49	(0.476,0.515]	chr6	294886	52	INTRON	INTRON	MDN1	ENSG00000112159.12	ENST00000369393.8:ENST00000629399.2:ENST00000439638.1	protein_coding	protein_coding	protein_coding	protein_coding	9	118	2	1.95834	2.39668	2.83502	0.00823447	1.72457e-4	0.0772968	0.0113919
chr12	112065483	112065582	5414980	0	-	0.454545	(0.44,0.476]	chr12	517189	37	INTRON	INTRON	NAA25	ENSG00000111300.10	ENST00000261745.9:ENST00000552527.5:ENST00000549711.5:ENST00000551858.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	68	2	2.14666	2.396675	2.64669	0.0116436	0.0040295	0.0889659	0.0578376
chr6	167829429	167829529	3034362	0	+	0.3	(0.28,0.32]	chr6	282711	11	INTRON	INTRON	AFDN	ENSG00000130396.21	ENST00000683244.1:ENST00000400825.8:ENST00000351017.9:ENST00000344191.8:ENST00000392112.5:ENST00000392108.7:ENST00000400824.8:ENST00000400822.7:ENST00000447894.6:ENST00000366809.6:ENST00000366806.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	53	2	2.33771	2.39658	2.45545	0.0438092	0.0142701	0.14901	0.103838
chr10	63343982	63344082	4634170	0	-	0.45	(0.44,0.476]	chr10	426226	749	INTRON	INTRON	JMJD1C	ENSG00000171988.20	ENST00000399262.7:ENST00000633035.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	42	2	1.93084	2.396575	2.86231	0.0443175	0.012214	0.162302	0.0910127
chr11	110242229	110242328	5040775	0	-	0.454545	(0.44,0.476]	chr11	474680	42	INTRON	INTRON	RDX	ENSG00000137710.17	ENST00000645527.1:ENST00000530749.5:ENST00000528498.5:ENST00000528900.5:ENST00000530301.5:ENST00000647231.1:ENST00000646663.1:ENST00000645495.2:ENST00000544551.5:ENST00000530131.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	42	2	1.93084	2.396575	2.86231	0.0443175	0.012214	0.162302	0.0910127
chr2	224529993	224530092	1335782	0	-	0.474747	(0.44,0.476]	chr2	140141	149	INTRON	INTRON	CUL3	ENSG00000036257.14	ENST00000344951.8:ENST00000264414.9:ENST00000409096.5:ENST00000409777.5:ENST00000541548.5:ENST00000432260.2:ENST00000436172.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	42	2	1.93084	2.396575	2.86231	0.0443175	0.012214	0.162302	0.0910127
chr9	137806122	137806221	4225399	0	+	0.474747	(0.44,0.476]	chr9	388373	24	INTRON	INTRON	EHMT1	ENSG00000181090.21	ENST00000460843.6:ENST00000636027.1:ENST00000637161.1:ENST00000637261.1:ENST00000462942.3:ENST00000637891.1:ENST00000637949.1:ENST00000486164.5:ENST00000488242.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	42	2	1.93084	2.396575	2.86231	0.0443175	0.012214	0.162302	0.0910127
chr3	47655613	47655713	1683786	0	-	0.49	(0.476,0.515]	chr3	171996	165	INTRON	INTRON	SMARCC1	ENSG00000173473.11	ENST00000254480.10:ENST00000425518.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	95	2	1.99457	2.396565	2.79856	0.009924	7.60949e-4	0.0877296	0.0252625
chr6	152875896	152875991	3249543	0	-	0.578947	(0.57,1]	chr6	301925	3	EXON_LNCRNA	EXON_LNCRNA	LINC02840	ENSG00000224893.7	ENST00000656248.1:ENST00000657202.1:ENST00000654424.1:ENST00000670414.1:ENST00000671138.1:ENST00000658966.1:ENST00000667732.1:ENST00000652681.1	lncRNA	lncRNA	lncRNA	lncRNA	5	36	2	1.98953	2.39652	2.80351	0.0182848	0.00172505	0.115629	0.0374701
chr5	178771730	178771829	2779179	0	-	0.494949	(0.476,0.515]	chr5	262210	27	INTRON	INTRON	AACSP1	ENSG00000250420.8	ENST00000503486.6:ENST00000521412.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	5	67	2	2.29359	2.3965	2.49941	0.00811651	0.00584957	0.0766625	0.0689807
chr20	63958792	63958892	7363857	0	-	0.52	(0.515,0.57]	chr20	751490	22	UTR3	UTR3:EXON_MRNA	ZNF512B	ENSG00000196700.9	ENST00000369888.6	protein_coding	protein_coding	protein_coding	protein_coding	6	66	2	1.9888	2.3964	2.804	0.00963364	0.00215855	0.086971	0.0417866
chr16	23900749	23900849	6324408	0	+	0.45	(0.44,0.476]	chr16	605701	70	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000498739.1	protein_coding	protein_coding	protein_coding	protein_coding	4	50	2	1.87325	2.396375	2.9195	0.0265709	0.0102021	0.134088	0.0850389
chr22	19942494	19942592	7477407	0	+	0.540816	(0.515,0.57]	chr22	762554	2	INTRON	INTRON	COMT	ENSG00000093010.15	ENST00000676678.1:ENST00000403184.5:ENST00000361682.11:ENST00000403710.5:ENST00000407537.5:ENST00000467943.5:ENST00000678868.1:ENST00000678769.1:ENST00000428707.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	21	235	2	2.38009	2.39633	2.41257	2.02074e-4	6.15393e-5	0.0124395	0.00692561
chr10	42807211	42807311	4428279	0	+	0.3	(0.28,0.32]	chr10	408133	46	INTRON	INTRON	BMS1	ENSG00000165733.8	ENST00000374518.6	protein_coding	protein_coding	protein_coding	protein_coding	3	53	2	1.96475	2.39622	2.82769	0.0428385	0.0169391	0.162255	0.103888
chr13	99283679	99283779	5525269	0	+	0.29	(0.28,0.32]	chr13	528241	387	INTRON	INTRON	UBAC2	ENSG00000134882.16	ENST00000355700.9:ENST00000403766.8:ENST00000468067.5:ENST00000473091.5:ENST00000376440.6:ENST00000494576.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	53	2	1.96475	2.39622	2.82769	0.0428385	0.0169391	0.162255	0.103888
chr2	32568911	32569010	732984	0	+	0.363636	(0.35,0.378]	chr2	84650	26	INTRON	INTRON	BIRC6	ENSG00000115760.15	ENST00000421745.7:ENST00000471232.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	63	2	1.87717	2.396165	2.91516	0.0555068	0.0013628	0.165463	0.0339121
chr4	40100326	40100426	1954300	0	+	0.39	(0.378,0.408]	chr4	195700	2	SS5_PROX	SS5_PROX:INTRON	N4BP2	ENSG00000078177.14	ENST00000261435.11:ENST00000511480.5:ENST00000515550.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	60	2	1.89052	2.39607	2.90162	0.0148147	0.0113157	0.106702	0.0886121
chr13	36200983	36201081	5573201	0	-	0.438776	(0.408,0.44]	chr13	532635	68	INTRON	INTRON	SOHLH2	ENSG00000120669.16	ENST00000379881.8:ENST00000317764.6	protein_coding	protein_coding	protein_coding	protein_coding	4	51	2	1.58763	2.396	3.20437	0.0639217	0.00306596	0.177824	0.0509893
chr22	21796828	21796927	7560675	0	-	0.383838	(0.378,0.408]	chr22	773370	77	INTRON	INTRON	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	12	99	2	1.28293	2.396	3.50907	0.0299825	0.00127828	0.142135	0.0326395
chr1	15657179	15657277	33889	0	+	0.408163	(0.378,0.408]	chr1	4132	1	INTRON	INTRON	DDI2	ENSG00000197312.12	ENST00000480945.6:ENST00000320153.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	52	2	1.8374	2.395995	2.95459	0.0299228	0.00957623	0.142135	0.0820838
chr17	31113262	31113362	6591316	0	+	0.43	(0.408,0.44]	chr17	641053	175	INTRON	INTRON	NF1	ENSG00000196712.20	ENST00000696138.1:ENST00000356175.7:ENST00000487476.5:ENST00000691014.1:ENST00000358273.9:ENST00000431387.8:ENST00000579081.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	65	2	1.78592	2.3959349999999997	3.00595	0.0142075	0.00781452	0.103638	0.0759016
chr10	832657	832755	4541582	0	-	0.316327	(0.28,0.32]	chr10	419243	13	INTRON	INTRON	LARP4B	ENSG00000107929.16	ENST00000688365.1:ENST00000316157.8:ENST00000690516.1:ENST00000689323.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	86	2	2.35314	2.39592	2.4387	0.0126802	0.00539714	0.0926667	0.066545000000000007
chr1	147936626	147936686	212869	0	+	0.35	(0.32,0.35]	chr1	23635	1	CDS	CDS:EXON_MRNA:INTRON	GPR89B	ENSG00000188092.15	ENST00000478307.5:ENST00000488165.5:ENST00000314163.12:ENST00000468618.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	37	2	2.21917	2.3959	2.57263	0.0641245	0.0312297	0.199279	0.13151
chr1	162584417	162584515	238550	0	+	0.326531	(0.32,0.35]	chr1	28722	26	INTRON	INTRON	UAP1	ENSG00000117143.14	ENST00000367925.6:ENST00000367926.9:ENST00000474728.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	37	2	2.21917	2.3959	2.57263	0.0641245	0.0312297	0.199279	0.13151
chr7	38726326	38726426	3521083	0	-	0.33	(0.32,0.35]	chr7	328339	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	VPS41	ENSG00000006715.16	ENST00000310301.9:ENST00000395969.6:ENST00000490924.1:ENST00000448833.5:ENST00000482217.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	37	2	2.21917	2.3959	2.57263	0.0641245	0.0312297	0.199279	0.13151
chr8	144193974	144194072	3880785	0	+	0.336735	(0.32,0.35]	chr8	356689	8	INTRON	INTRON	MROH1	ENSG00000179832.18	ENST00000326134.10:ENST00000532255.5:ENST00000423230.6:ENST00000534366.5:ENST00000527552.5:ENST00000528919.5:ENST00000534508.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	37	2	2.21917	2.3959	2.57263	0.0641245	0.0312297	0.199279	0.13151
chr1	108940331	108940425	518929	0	-	0.212766	[0,0.28]	chr1	60887	3	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	CLCC1	ENSG00000121940.17	ENST00000690509.1:ENST00000687328.1:ENST00000685014.1:ENST00000685540.1:ENST00000686576.1:ENST00000688070.1:ENST00000691513.1:ENST00000686821.1:ENST00000692511.1:ENST00000689479.1:ENST00000687646.1:ENST00000687998.1:ENST00000687226.1:ENST00000693336.1:ENST00000689991.1:ENST00000687591.1:ENST00000691777.1:ENST00000690756.1:ENST00000688778.1:ENST00000685104.1:ENST00000689103.1:ENST00000687734.1:ENST00000686434.1:ENST00000685497.1:ENST00000691342.1:ENST00000686776.1:ENST00000692342.1:ENST00000689351.1:ENST00000692584.1:ENST00000692775.1:ENST00000687134.1:ENST00000690707.1:ENST00000687675.1:ENST00000675018.1:ENST00000690781.1:ENST00000691556.1:ENST00000689189.1:ENST00000687099.1:ENST00000685791.1:ENST00000687865.1:ENST00000687449.1:ENST00000688285.1:ENST00000686817.1:ENST00000369968.7:ENST00000674992.1:ENST00000675001.1:ENST00000369969.7:ENST00000356970.6:ENST00000692184.1:ENST00000482889.2:ENST00000369976.6:ENST00000688610.1:ENST00000675128.1:ENST00000693089.1:ENST00000675571.1:ENST00000675650.1:ENST00000369970.8:ENST00000674561.2:ENST00000675451.1:ENST00000675654.1:ENST00000675790.1:ENST00000675584.1:ENST00000692795.1:ENST00000691731.1:ENST00000689359.1:ENST00000676392.2:ENST00000676391.2:ENST00000676454.1:ENST00000674849.1:ENST00000675956.1:ENST00000302500.5:ENST00000675508.1:ENST00000688168.1:ENST00000693673.1:ENST00000692404.1:ENST00000686078.1:ENST00000690874.1:ENST00000686961.1:ENST00000692732.1:ENST00000685628.1:ENST00000676306.1:ENST00000348264.6:ENST00000675247.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	60	2	2.24546	2.3958500000000003	2.54624	0.0388449	0.0206502	0.143072	0.122348
chr15	76256234	76256334	6227781	0	-	0.25	[0,0.28]	chr15	594907	106	INTRON	INTRON	ETFA	ENSG00000140374.17	ENST00000690610.1:ENST00000557943.6:ENST00000692691.1:ENST00000688389.1:ENST00000687293.1:ENST00000691695.1:ENST00000685863.1:ENST00000689730.1:ENST00000687975.1:ENST00000693064.1:ENST00000688908.1:ENST00000691021.1:ENST00000433983.6:ENST00000267950.12:ENST00000685548.1:ENST00000565910.6:ENST00000688154.1:ENST00000560595.6:ENST00000560726.5:ENST00000559602.5:ENST00000560044.6:ENST00000559973.5:ENST00000559386.2:ENST00000560899.5:ENST00000685118.1:ENST00000688637.1:ENST00000559075.5:ENST00000689739.1:ENST00000691071.1:ENST00000560816.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	60	2	2.24546	2.3958500000000003	2.54624	0.0388449	0.0206502	0.143072	0.122348
chr5	159191423	159191523	2759005	0	-	0.23	[0,0.28]	chr5	260356	90	INTRON	INTRON	RNF145	ENSG00000145860.12	ENST00000424310.7:ENST00000519865.5:ENST00000274542.6:ENST00000611185.4:ENST00000521606.6:ENST00000518802.5:ENST00000520638.1:ENST00000520548.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	60	2	2.24546	2.3958500000000003	2.54624	0.0388449	0.0206502	0.143072	0.122348
chr8	31045072	31045172	3728044	0	+	0.28	[0,0.28]	chr8	346522	107	INTRON	INTRON	WRN	ENSG00000165392.11	ENST00000650667.1:ENST00000298139.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	60	2	2.24546	2.3958500000000003	2.54624	0.0388449	0.0206502	0.143072	0.122348
chr10	35343497	35343597	4424572	0	+	0.53	(0.515,0.57]	chr10	407899	59	INTRON	INTRON	CCNY	ENSG00000108100.18	ENST00000374706.5:ENST00000490012.6:ENST00000493157.6:ENST00000374704.8:ENST00000265375.13:ENST00000339497.7:ENST00000492478.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	55	2	1.64415	2.395725	3.1473	0.0231656	0.00397184	0.127036	0.0549214
chr5	43132501	43132600	2349143	0	+	0.383838	(0.378,0.408]	chr5	226661	76	INTRON	INTRON	ZNF131	ENSG00000172262.12	ENST00000515326.5:ENST00000682664.1:ENST00000510026.5:ENST00000504359.1:ENST00000509156.5:ENST00000508259.5:ENST00000507218.5:ENST00000306938.8:ENST00000505606.6:ENST00000509634.5:ENST00000509341.5:ENST00000511736.5:ENST00000509931.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	123	2	2.02407	2.39562	2.76717	0.00680892	2.59679e-4	0.0711884	0.014326
chr13	28145484	28145584	5460898	0	+	0.48	(0.476,0.515]	chr13	523235	60	INTRON	INTRON	PAN3	ENSG00000152520.14	ENST00000503791.5:ENST00000380958.8:ENST00000399613.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	31	2	2.13854	2.39561	2.65268	0.0776563	0.0201975	0.196285	0.121243
chr20	34454941	34455038	7260044	0	+	0.505155	(0.476,0.515]	chr20	737498	5	INTRON	INTRON	ITCH	ENSG00000078747.16	ENST00000374864.10:ENST00000535650.7:ENST00000670516.1:ENST00000665484.1:ENST00000664852.1:ENST00000660337.1:ENST00000262650.10:ENST00000662871.1:ENST00000665346.1:ENST00000483727.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	31	2	2.13854	2.39561	2.65268	0.0776563	0.0201975	0.196285	0.121243
chr20	35544208	35544307	7262708	0	+	0.484848	(0.476,0.515]	chr20	737988	4	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	ERGIC3	ENSG00000125991.21	ENST00000357394.8:ENST00000447986.5:ENST00000348547.7:ENST00000438317.5:ENST00000279052.10:ENST00000416206.5:ENST00000413587.5:ENST00000461043.6:ENST00000496172.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	31	2	2.13854	2.39561	2.65268	0.0776563	0.0201975	0.196285	0.121243
chr22	46345921	46346021	7533986	0	+	0.48	(0.476,0.515]	chr22	770375	1	SS3_PROX	SS3_PROX:INTRON	TRMU	ENSG00000100416.15	ENST00000486620.5:ENST00000441818.5:ENST00000381021.7:ENST00000453630.5:ENST00000456595.5:ENST00000457572.5:ENST00000645190.1:ENST00000645026.1:ENST00000647301.1:ENST00000642562.1:ENST00000381019.3:ENST00000642923.1:ENST00000496831.5:ENST00000465378.6:ENST00000644006.1:ENST00000485175.5:ENST00000643137.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	31	2	2.13854	2.39561	2.65268	0.0776563	0.0201975	0.196285	0.121243
chr7	130193223	130193323	3638631	0	-	0.49	(0.476,0.515]	chr7	338394	4	SS3_PROX	SS3_PROX:INTRON	TMEM209	ENSG00000146842.17	ENST00000397622.7:ENST00000473456.5:ENST00000462753.5	protein_coding	protein_coding	protein_coding	protein_coding	2	31	2	2.13854	2.39561	2.65268	0.0776563	0.0201975	0.196285	0.121243
chr8	17960644	17960744	3708125	0	+	0.49	(0.476,0.515]	chr8	343899	2	SS5_PROX	SS5_PROX:INTRON	PCM1	ENSG00000078674.19	ENST00000325083.13:ENST00000519253.5:ENST00000524226.5:ENST00000517836.5:ENST00000518762.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	31	2	2.13854	2.39561	2.65268	0.0776563	0.0201975	0.196285	0.121243
chr11	47468330	47468430	4949523	0	-	0.43	(0.408,0.44]	chr11	464136	25	UTR3	UTR3:EXON_MRNA	CELF1	ENSG00000149187.19	ENST00000310513.10:ENST00000687097.1:ENST00000395290.6:ENST00000358597.7:ENST00000395292.6	protein_coding	protein_coding	protein_coding	protein_coding	5	59	2	2.00961	2.395415	2.78122	0.015812	0.00931007	0.101453	0.0855292
chr20	63280199	63280298	7299713	0	+	0.454545	(0.44,0.476]	chr20	742783	5	INTRON	INTRON	ARFGAP1	ENSG00000101199.13	ENST00000519273.6:ENST00000519604.5:ENST00000547204.5:ENST00000549047.5:ENST00000370283.9:ENST00000523460.5:ENST00000520485.5:ENST00000519531.5:ENST00000370275.8:ENST00000518601.6:ENST00000353546.7:ENST00000522403.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	89	2	2.36073	2.395345	2.42996	0.0104804	0.00108744	0.0855777	0.0301337
chr3	185929454	185929549	1886516	0	-	0.357895	(0.35,0.378]	chr3	188633	5	INTRON	INTRON	TRA2B	ENSG00000136527.19	ENST00000453386.7:ENST00000487615.5:ENST00000456380.5:ENST00000382191.4:ENST00000465245.1:ENST00000485530.5:ENST00000477939.1:ENST00000471134.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	15	216	2	2.30389	2.3953249999999997	2.48676	6.01342e-4	3.61706e-4	0.0226059	0.0169808
chr1	153895074	153895173	557487	0	-	0.484848	(0.476,0.515]	chr1	65989	82	INTRON	INTRON	GATAD2B	ENSG00000143614.10	ENST00000368655.5:ENST00000634544.1:ENST00000634408.1:ENST00000634401.1:ENST00000634791.1:ENST00000636014.1:ENST00000637331.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	31	2	2.38442	2.39525	2.40608	0.0425709	0.0417472	0.161736	0.148082
chr12	104287731	104287831	5210013	0	+	0.48	(0.476,0.515]	chr12	493193	3	SS5_PROX	SS5_PROX:INTRON	TXNRD1	ENSG00000198431.17	ENST00000525566.6:ENST00000526266.5:ENST00000503506.6:ENST00000526691.5:ENST00000531691.5:ENST00000526390.5:ENST00000531689.5:ENST00000529546.5:ENST00000529751.1:ENST00000526207.1:ENST00000528079.6:ENST00000526580.5:ENST00000529784.5:ENST00000524698.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	31	2	2.38442	2.39525	2.40608	0.0425709	0.0417472	0.161736	0.148082
chr12	110740261	110740361	5411508	0	-	0.49	(0.476,0.515]	chr12	516744	49	INTRON	INTRON	PPP1CC	ENSG00000186298.12	ENST00000335007.10:ENST00000340766.9:ENST00000550991.5:ENST00000551676.5:ENST00000620030.1:ENST00000551690.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:processed_transcript	2	31	2	2.38442	2.39525	2.40608	0.0425709	0.0417472	0.161736	0.148082
chr17	50693896	50693996	6795164	0	-	0.5	(0.476,0.515]	chr17	670765	8	UTR3	UTR3:EXON_MRNA	ANKRD40	ENSG00000154945.7	ENST00000285243.7	protein_coding	protein_coding	protein_coding	protein_coding	2	31	2	2.38442	2.39525	2.40608	0.0425709	0.0417472	0.161736	0.148082
chr2	88584441	88584541	1173995	0	-	0.49	(0.476,0.515]	chr2	125367	5	INTRON	INTRON	EIF2AK3	ENSG00000172071.15	ENST00000303236.9:ENST00000652736.1:ENST00000684642.1:ENST00000682276.1:ENST00000682952.1:ENST00000684455.1:ENST00000652099.1:ENST00000682892.1:ENST00000415570.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	31	2	2.38442	2.39525	2.40608	0.0425709	0.0417472	0.161736	0.148082
chr6	135208222	135208321	2962443	0	+	0.484848	(0.476,0.515]	chr6	278661	44	INTRON	INTRON	MYB	ENSG00000118513.20	ENST00000341911.10:ENST00000442647.7:ENST00000316528.12:ENST00000616088.4:ENST00000339290.9:ENST00000367812.6:ENST00000463282.6:ENST00000525477.5:ENST00000533837.5:ENST00000367814.8:ENST00000525369.5:ENST00000438901.6:ENST00000525514.5:ENST00000526320.5:ENST00000526889.5:ENST00000529586.5:ENST00000531519.5:ENST00000533808.5:ENST00000528343.5:ENST00000524588.5:ENST00000525002.5:ENST00000525940.5:ENST00000526187.5:ENST00000526565.5:ENST00000528015.5:ENST00000528140.5:ENST00000528345.5:ENST00000528774.5:ENST00000529262.5:ENST00000531634.5:ENST00000531737.5:ENST00000533384.5:ENST00000533624.5:ENST00000534044.5:ENST00000534121.5:ENST00000531845.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	31	2	2.38442	2.39525	2.40608	0.0425709	0.0417472	0.161736	0.148082
chr7	7218943	7219043	3274957	0	+	0.51	(0.476,0.515]	chr7	304579	85	INTRON	INTRON	C1GALT1	ENSG00000106392.11	ENST00000429911.5:ENST00000436587.7:ENST00000476068.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	31	2	2.38442	2.39525	2.40608	0.0425709	0.0417472	0.161736	0.148082
chr7	139776904	139777004	3658825	0	-	0.57	(0.515,0.57]	chr7	339545	595	INTRON	INTRON	HIPK2	ENSG00000064393.16	ENST00000406875.8:ENST00000428878.6	protein_coding	protein_coding	protein_coding	protein_coding	4	50	2	2.11313	2.3952299999999997	2.67733	0.0256725	0.00366712	0.133676	0.0535094
chr1	26777325	26777421	52014	0	+	0.4375	(0.408,0.44]	chr1	6647	10	INTRON	INTRON	ARID1A	ENSG00000117713.21	ENST00000430799.7:ENST00000324856.13:ENST00000457599.6:ENST00000374152.7:ENST00000636219.1:ENST00000466382.2:ENST00000532781.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	19	246	2	2.16028	2.39521	2.63014	0.00102315	2.59341e-5	0.029231300000000002	0.00400731
chr10	28571016	28571116	4414184	0	+	0.62	(0.57,1]	chr10	407148	326	INTRON	INTRON	WAC	ENSG00000095787.24	ENST00000680735.1:ENST00000375664.8:ENST00000428935.6:ENST00000651598.1:ENST00000628285.3:ENST00000681112.1:ENST00000679570.1:ENST00000375646.5:ENST00000354911.9:ENST00000347934.8:ENST00000420266.6:ENST00000651885.1:ENST00000651441.1:ENST00000679398.1:ENST00000424454.5:ENST00000442148.6:ENST00000448193.5:ENST00000414108.6:ENST00000679428.1:ENST00000439676.5:ENST00000345541.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	32	2	1.77365	2.3951849999999997	3.01672	0.0670385	5.94133e-4	0.183051	0.0221865
chr5	146498135	146498235	2516031	0	+	0.37	(0.35,0.378]	chr5	240377	2	SS3_PROX	SS3_PROX:INTRON	TCERG1	ENSG00000113649.13	ENST00000296702.9:ENST00000679501.2:ENST00000394421.7:ENST00000549332.1:ENST00000506524.5:ENST00000505285.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	62	2	2.34278	2.3951399999999996	2.4475	0.0129593	0.0106974	0.0991015	0.0862205
chr5	57251541	57251641	2358844	0	+	0.31	(0.28,0.32]	chr5	227619	4	SS5_PROX	SS5_PROX:INTRON	GPBP1	ENSG00000062194.16	ENST00000424459.7:ENST00000514387.6:ENST00000506184.7:ENST00000511209.5:ENST00000264779.6:ENST00000515484.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	100	2	2.38564	2.39511	2.40458	0.0141047	0.00230684	0.0959618	0.0440898
chr20	50896490	50896588	7355524	0	-	0.459184	(0.44,0.476]	chr20	750082	16	INTRON	INTRON	ADNP	ENSG00000101126.18	ENST00000371602.9:ENST00000621696.5:ENST00000673732.1:ENST00000396029.8:ENST00000644386.1:ENST00000396032.8:ENST00000349014.8:ENST00000645081.1:ENST00000642364.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	118	2	2.15426	2.39503	2.6358	0.00372059	5.12141e-4	0.0535094	0.0203407
chr17	66312720	66312819	6662398	0	+	0.434343	(0.408,0.44]	chr17	650320	62	INTRON	INTRON	PRKCA	ENSG00000154229.12	ENST00000413366.8:ENST00000578063.5:ENST00000583361.1:ENST00000284384.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	14	181	2	2.27141	2.3949499999999997	2.51849	4.7661e-4	4.23399e-4	0.0197539	0.0189958
chr11	85967543	85967642	5013795	0	-	0.454545	(0.44,0.476]	chr11	472906	64	INTRON	INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000530692.5:ENST00000526548.3:ENST00000630913.2:ENST00000529760.5:ENST00000528398.5:ENST00000532603.5:ENST00000356360.9:ENST00000529016.5:ENST00000526961.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	31	2	2.20949	2.3949100000000003	2.58033	0.0672585	0.0247511	0.183051	0.131869
chr12	110541333	110541431	5410071	0	-	0.44898	(0.44,0.476]	chr12	516620	10	INTRON	INTRON	PPTC7	ENSG00000196850.6	ENST00000354300.5:ENST00000548721.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	31	2	2.20949	2.3949100000000003	2.58033	0.0672585	0.0247511	0.183051	0.131869
chr16	24179895	24179994	6327219	0	+	0.454545	(0.44,0.476]	chr16	605777	50	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000472066.1:ENST00000487674.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	31	2	2.20949	2.3949100000000003	2.58033	0.0672585	0.0247511	0.183051	0.131869
chr20	56373756	56373856	7358695	0	-	0.47	(0.44,0.476]	chr20	750345	2	SS3_PROX	SS3_PROX:INTRON	AURKA	ENSG00000087586.18	ENST00000395914.5:ENST00000395913.7:ENST00000312783.10:ENST00000395911.5:ENST00000395915.8:ENST00000347343.6:ENST00000371356.6:ENST00000395907.5:ENST00000441357.5	protein_coding	protein_coding	protein_coding	protein_coding	2	31	2	2.20949	2.3949100000000003	2.58033	0.0672585	0.0247511	0.183051	0.131869
chr20	63919248	63919348	7301201	0	+	0.47	(0.44,0.476]	chr20	743138	4	PRIMIRNA	PRIMIRNA:INTRON	DNAJC5:MIR941-1	ENSG00000101152.11:ENSG00000283206.1	ENST00000360864.9:ENST00000470551.1:ENST00000636396.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:nonsense_mediated_decay:primary_miRNA	2	31	2	2.20949	2.3949100000000003	2.58033	0.0672585	0.0247511	0.183051	0.131869
chr5	150734079	150734179	2751647	0	-	0.47	(0.44,0.476]	chr5	259253	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	DCTN4	ENSG00000132912.13	ENST00000447998.7:ENST00000424236.5:ENST00000446090.6:ENST00000627368.2:ENST00000521728.5:ENST00000519313.5:ENST00000518015.5:ENST00000521448.5:ENST00000521533.1:ENST00000521093.1:ENST00000520195.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	31	2	2.20949	2.3949100000000003	2.58033	0.0672585	0.0247511	0.183051	0.131869
chr14	21263086	21263183	5835104	0	-	0.350515	(0.35,0.378]	chr14	554468	6	UTR5	UTR5:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HNRNPC	ENSG00000092199.19	ENST00000336053.10:ENST00000553300.6:ENST00000554969.5:ENST00000556142.5:ENST00000554455.5:ENST00000430246.6:ENST00000553753.5:ENST00000555309.5:ENST00000555914.5:ENST00000557442.5:ENST00000556628.5:ENST00000556513.5:ENST00000555883.5:ENST00000557201.5:ENST00000420743.6:ENST00000554539.5:ENST00000554383.5:ENST00000555215.5:ENST00000555137.5:ENST00000554891.5:ENST00000556226.5:ENST00000555176.5:ENST00000553614.5:ENST00000557336.1:ENST00000557768.1:ENST00000557033.1:ENST00000555127.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	154	2	1.95554	2.39489	2.83424	0.00372132	3.32699e-4	0.0561984	0.016912
chr9	135952482	135952582	4372480	0	-	0.52	(0.515,0.57]	chr9	402541	42	INTRON	INTRON	UBAC1	ENSG00000130560.9	ENST00000371756.4:ENST00000478485.1:ENST00000486258.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	111	2	1.66882	2.394865	3.12091	0.00913026	1.0674e-4	0.0855292	0.00924854
chr16	23686175	23686274	6323705	0	+	0.464646	(0.44,0.476]	chr16	605659	17	INTRON	INTRON	PLK1	ENSG00000166851.15	ENST00000562272.5:ENST00000300093.9:ENST00000562407.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	56	2	2.19078	2.39483	2.59888	0.0226089	0.00487719	0.117489	0.0640618
chr4	2552847	2552947	1912678	0	+	0.47	(0.44,0.476]	chr4	191976	153	INTRON	INTRON	RNF4:FAM193A	ENSG00000063978.16:ENSG00000125386.16	ENST00000508235.1:ENST00000637812.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	56	2	2.19078	2.39483	2.59888	0.0226089	0.00487719	0.117489	0.0640618
chr6	107883556	107883646	3182081	0	-	0.455556	(0.44,0.476]	chr6	296379	2	SS3_PROX	SS3_PROX:INTRON	SEC63	ENSG00000025796.14	ENST00000369002.9	protein_coding	protein_coding	protein_coding	protein_coding	4	56	2	2.19078	2.39483	2.59888	0.0226089	0.00487719	0.117489	0.0640618
chr10	74113390	74113488	4455680	0	+	0.438776	(0.408,0.44]	chr10	411503	9	INTRON	INTRON	VCL	ENSG00000035403.18	ENST00000623461.3:ENST00000372755.7:ENST00000624354.3:ENST00000211998.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	42	2	2.27464	2.39478	2.51492	0.0329839	0.0158016	0.133816	0.109464
chr15	41012487	41012587	6152170	0	-	0.47	(0.44,0.476]	chr15	585272	64	INTRON	INTRON	INO80	ENSG00000128908.18	ENST00000648947.1:ENST00000401393.7:ENST00000558357.6:ENST00000559995.2:ENST00000557849.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	31	2	2.29842	2.3947700000000003	2.49112	0.0552483	0.0315968	0.165463	0.144381
chr15	90558736	90558836	6100016	0	+	0.45	(0.44,0.476]	chr15	580749	182	INTRON	INTRON	CRTC3	ENSG00000140577.17	ENST00000268184.11:ENST00000420329.6:ENST00000691029.1:ENST00000686240.1:ENST00000560098.5:ENST00000561218.5:ENST00000692149.1:ENST00000558619.5:ENST00000560927.1:ENST00000687075.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	31	2	2.29842	2.3947700000000003	2.49112	0.0552483	0.0315968	0.165463	0.144381
chr2	24808303	24808402	712240	0	+	0.464646	(0.44,0.476]	chr2	82368	81	INTRON	INTRON	CENPO	ENSG00000138092.11	ENST00000473706.5:ENST00000491031.5:ENST00000380834.7:ENST00000486527.6:ENST00000260662.2:ENST00000498362.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	31	2	2.29842	2.3947700000000003	2.49112	0.0552483	0.0315968	0.165463	0.144381
chr21	9332584	9332683	7367457	0	+	0.474747	(0.44,0.476]	chr21	751926	9	INTRON	INTRON	ENSG00000278932	ENSG00000278932.5	ENST00000622961.3:ENST00000686553.1:ENST00000691955.1:ENST00000625153.3:ENST00000692626.1:ENST00000685951.1:ENST00000686510.1:ENST00000692884.1	lncRNA	lncRNA	lncRNA	lncRNA	2	31	2	2.29842	2.3947700000000003	2.49112	0.0552483	0.0315968	0.165463	0.144381
chr21	46435203	46435303	7422378	0	+	0.47	(0.44,0.476]	chr21	756920	26	INTRON	INTRON	PCNT	ENSG00000160299.18	ENST00000695558.1:ENST00000359568.10:ENST00000480896.5:ENST00000695527.1:ENST00000695528.1:ENST00000695529.1:ENST00000695530.1:ENST00000418394.2:ENST00000695532.1:ENST00000695531.1:ENST00000695533.1:ENST00000695534.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	31	2	2.29842	2.3947700000000003	2.49112	0.0552483	0.0315968	0.165463	0.144381
chr3	56638305	56638405	1705553	0	-	0.43	(0.408,0.44]	chr3	175828	2	SS5_PROX	SS5_PROX:INTRON	TASOR	ENSG00000163946.14	ENST00000683822.1:ENST00000431842.6:ENST00000493960.6:ENST00000355628.9:ENST00000614531.1	protein_coding	protein_coding	protein_coding	protein_coding	5	68	2	2.17784	2.3947700000000003	2.6117	0.00916282	0.00555224	0.0855292	0.0648867
chr6	136778923	136779022	3235506	0	-	0.454545	(0.44,0.476]	chr6	300700	580	INTRON	INTRON	MAP3K5	ENSG00000197442.10	ENST00000359015.5	protein_coding	protein_coding	protein_coding	protein_coding	2	31	2	2.29842	2.3947700000000003	2.49112	0.0552483	0.0315968	0.165463	0.144381
chr9	137635307	137635407	4223635	0	+	0.46	(0.44,0.476]	chr9	388152	149	INTRON	INTRON	EHMT1	ENSG00000181090.21	ENST00000462484.5:ENST00000371394.6:ENST00000630754.2:ENST00000460843.6:ENST00000626216.2:ENST00000637593.1:ENST00000629335.2:ENST00000637335.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	31	2	2.29842	2.3947700000000003	2.49112	0.0552483	0.0315968	0.165463	0.144381
chr11	27449333	27449433	4937188	0	-	0.47	(0.44,0.476]	chr11	462402	361	INTRON	INTRON	LGR4	ENSG00000205213.14	ENST00000379214.9:ENST00000389858.4:ENST00000480977.2	protein_coding	protein_coding	protein_coding	protein_coding	4	57	2	1.96602	2.394765	2.82351	0.0426807	0.00191049	0.148082	0.0403772
chr16	7987780	7987879	6440386	0	-	0.454545	(0.44,0.476]	chr16	620345	95	INTRON	INTRON	ENSG00000260289	ENSG00000260289.2	ENST00000670665.1:ENST00000654046.1:ENST00000567103.2	lncRNA	lncRNA	lncRNA	lncRNA	4	56	2	2.29126	2.394745	2.49823	0.0165638	0.00718224	0.102621	0.0756118
chr19	49164652	49164751	7089101	0	+	0.464646	(0.44,0.476]	chr19	709755	49	INTRON	INTRON	TRPM4	ENSG00000130529.16	ENST00000598691.5:ENST00000598697.5:ENST00000252826.10:ENST00000595519.5:ENST00000427978.6:ENST00000598502.5:ENST00000596338.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	56	2	2.29126	2.394745	2.49823	0.0165638	0.00718224	0.102621	0.0756118
chr3	41239709	41239801	1403453	0	+	0.456522	(0.44,0.476]	chr3	147483	5	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CTNNB1	ENSG00000168036.18	ENST00000643541.1:ENST00000645210.1:ENST00000646381.1:ENST00000405570.6:ENST00000642248.1:ENST00000433400.6:ENST00000642992.1:ENST00000431914.6:ENST00000642836.1:ENST00000396185.8:ENST00000642986.1:ENST00000644678.1:ENST00000643031.1:ENST00000396183.7:ENST00000645982.1:ENST00000453024.6:ENST00000645900.1:ENST00000646174.1:ENST00000643992.1:ENST00000642886.1:ENST00000647390.1:ENST00000643052.1:ENST00000349496.11:ENST00000642426.1:ENST00000646074.1:ENST00000645276.1:ENST00000646116.1:ENST00000644873.1:ENST00000644867.1:ENST00000646725.1:ENST00000645493.1:ENST00000646369.1:ENST00000643977.1:ENST00000644524.1:ENST00000645305.1:ENST00000643297.1:ENST00000450969.6:ENST00000642315.1:ENST00000645320.1:ENST00000441708.2:ENST00000647021.1:ENST00000471014.2:ENST00000644501.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	58	2	1.92704	2.394675	2.86231	0.0128054	0.012214	0.0990564	0.0910127
chr11	65126060	65126154	4804302	0	+	0.478723	(0.476,0.515]	chr11	446189	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	MRPL49	ENSG00000149792.9	ENST00000524482.5:ENST00000528529.1:ENST00000526319.5:ENST00000279242.7:ENST00000531705.1:ENST00000533943.1:ENST00000532671.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	69	2	1.91525	2.394655	2.87406	0.0232571	0.00188729	0.127416	0.0391691
chr15	58595567	58595666	6191952	0	-	0.313131	(0.28,0.32]	chr15	589880	69	UTR3	UTR3:EXON_MRNA	ADAM10	ENSG00000137845.15	ENST00000260408.8	protein_coding	protein_coding	protein_coding	protein_coding	3	53	2	1.76293	2.394625	3.02632	0.0766478	0.0071944	0.196164	0.0756118
chr2	61394054	61394153	1129780	0	-	0.444444	(0.44,0.476]	chr2	121474	104	INTRON	INTRON	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000453133.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	157	2	2.05633	2.39459	2.73285	0.00384449	7.27953e-5	0.0542786	0.00711523
chr3	195685510	195685607	1593719	0	+	0.42268	(0.408,0.44]	chr3	165079	22	EXON_LNCRNA	EXON_LNCRNA:SS3_PROX:INTRON	MUC20-OT1	ENSG00000242086.8	ENST00000429897.5:ENST00000445430.5:ENST00000600527.5:ENST00000626089.2:ENST00000451982.6:ENST00000601648.5:ENST00000414625.6:ENST00000628917.2:ENST00000625358.2:ENST00000602127.5:ENST00000625882.2:ENST00000625632.2:ENST00000626706.1:ENST00000627767.1:ENST00000627502.2:ENST00000597034.5:ENST00000629823.2:ENST00000630243.2:ENST00000608699.3:ENST00000627718.2	lncRNA	lncRNA	lncRNA	lncRNA	5	68	2	2.00629	2.39459	2.78289	0.0189661	0.0022785	0.108861	0.0437013
chr17	62008004	62008102	6810297	0	-	0.520408	(0.515,0.57]	chr17	672913	6	INTRON	INTRON	MED13	ENSG00000108510.10	ENST00000397786.7	protein_coding	protein_coding	protein_coding	protein_coding	10	112	2	1.93988	2.394555	2.84923	0.00481033	1.68834e-4	0.0638089	0.0119215
chr7	72831242	72831313	3329722	0	+	0.535211	(0.515,0.57]	chr7	309535	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SBDSP1	ENSG00000225648.6	ENST00000423945.5:ENST00000685034.1:ENST00000453858.2:ENST00000691023.1:ENST00000415772.5:ENST00000456312.5:ENST00000437201.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	3	39	2	2.35125	2.39454	2.43783	0.0436431	0.00916404	0.162255	0.0812949
chr9	123258444	123258544	4340380	0	-	0.49	(0.476,0.515]	chr9	398963	211	INTRON	INTRON	STRBP	ENSG00000165209.19	ENST00000348403.10:ENST00000360998.3:ENST00000407982.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	56	2	2.10874	2.394485	2.68023	0.0285608	0.00353671	0.12666	0.0546236
chr3	195978248	195978347	1896847	0	-	0.575758	(0.57,1]	chr3	189844	6	INTRON	INTRON	SDHAP1	ENSG00000185485.14	ENST00000427841.5:ENST00000440850.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	5	36	2	1.83769	2.39446	2.95123	0.0297587	8.39007e-4	0.12908	0.0263691
chr1	75751979	75752077	144263	0	+	0.438776	(0.408,0.44]	chr1	16290	7	INTRON	INTRON	ACADM	ENSG00000117054.15	ENST00000679530.1:ENST00000680582.1:ENST00000473018.3:ENST00000680694.1:ENST00000541113.6:ENST00000681063.1:ENST00000681913.1:ENST00000680613.1:ENST00000680805.1:ENST00000681278.1:ENST00000681209.1:ENST00000680691.1:ENST00000681037.1:ENST00000679976.1:ENST00000680749.1:ENST00000681430.1:ENST00000681289.1:ENST00000680964.1:ENST00000679615.1:ENST00000681446.1:ENST00000681680.1:ENST00000681621.1:ENST00000681930.1:ENST00000679509.1:ENST00000680798.1:ENST00000680517.1:ENST00000681361.1:ENST00000681790.1:ENST00000681837.1:ENST00000680743.1:ENST00000681616.1:ENST00000680948.1:ENST00000681916.1:ENST00000526196.5:ENST00000526129.5:ENST00000679709.1:ENST00000370841.9:ENST00000370834.9:ENST00000680844.1:ENST00000681720.1:ENST00000681548.1:ENST00000681450.1:ENST00000679687.1:ENST00000680662.1:ENST00000679704.1:ENST00000525808.5:ENST00000534334.5:ENST00000420607.6:ENST00000680166.1:ENST00000681730.1:ENST00000529059.5:ENST00000532207.6:ENST00000528016.1:ENST00000680315.1:ENST00000481374.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	42	2	2.00768	2.39445	2.78122	0.035843	0.015812	0.152216	0.101453
chr1	42333224	42333324	432419	0	-	0.32	(0.28,0.32]	chr1	52343	90	INTRON	INTRON	FOXJ3	ENSG00000198815.9	ENST00000372573.5:ENST00000372572.5:ENST00000361776.5:ENST00000361346.6:ENST00000445886.5	protein_coding	protein_coding	protein_coding	protein_coding	2	39	2	2.32871	2.394445	2.46018	0.0581621	0.0375904	0.167723	0.156054
chr1	117444321	117444421	198066	0	+	0.3	(0.28,0.32]	chr1	21949	16	INTRON	INTRON	MAN1A2	ENSG00000198162.12	ENST00000356554.7:ENST00000449370.6	protein_coding	protein_coding	protein_coding	protein_coding	2	39	2	2.32871	2.394445	2.46018	0.0581621	0.0375904	0.167723	0.156054
chr17	30120170	30120270	6587422	0	+	0.32	(0.28,0.32]	chr17	640557	16	INTRON	INTRON	NSRP1	ENSG00000126653.18	ENST00000540900.7:ENST00000584423.5:ENST00000612959.4:ENST00000247026.10:ENST00000577289.6:ENST00000584154.5:ENST00000394826.8:ENST00000479218.6:ENST00000475652.5:ENST00000584317.5:ENST00000583301.5:ENST00000585881.5:ENST00000467446.6:ENST00000580103.6:ENST00000581048.5:ENST00000588614.1:ENST00000589608.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	39	2	2.32871	2.394445	2.46018	0.0581621	0.0375904	0.167723	0.156054
chr5	72881096	72881192	2387785	0	+	0.416667	(0.408,0.44]	chr5	230422	21	INTRON	INTRON	TNPO1	ENSG00000083312.19	ENST00000680533.1:ENST00000520850.5:ENST00000337273.10:ENST00000680025.1:ENST00000523768.5:ENST00000681711.1:ENST00000679378.1:ENST00000506351.6:ENST00000508762.5:ENST00000505082.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	94	2	2.19398	2.394425	2.59487	0.0043348	0.00202403	0.0600652	0.04086
chr1	6582799	6582895	5340	0	+	0.385417	(0.378,0.408]	chr1	1034	1	INTRON	INTRON	ZBTB48	ENSG00000204859.13	ENST00000377674.9:ENST00000488936.1	protein_coding	protein_coding	protein_coding	protein_coding	6	81	2	1.91906	2.394305	2.86955	0.0153989	0.00159247	0.100621	0.0367961
chr7	4782051	4782151	3270885	0	+	0.49	(0.476,0.515]	chr7	303941	1	SS5_PROX	SS5_PROX:INTRON	AP5Z1	ENSG00000242802.9	ENST00000647984.1:ENST00000649063.2:ENST00000477680.6:ENST00000650451.1:ENST00000650310.1:ENST00000648925.1:ENST00000496303.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	56	2	2.37731	2.39426	2.41121	0.0111793	0.0110342	0.0937192	0.0873897
chr9	94823086	94823185	4164012	0	+	0.484848	(0.476,0.515]	chr9	379584	217	INTRON	INTRON	AOPEP	ENSG00000148120.18	ENST00000375315.8:ENST00000277198.6:ENST00000297979.9:ENST00000424143.5	protein_coding	protein_coding	protein_coding	protein_coding	4	56	2	2.37731	2.39426	2.41121	0.0111793	0.0110342	0.0937192	0.0873897
chr2	169830051	169830151	908169	0	+	0.22	[0,0.28]	chr2	100222	16	INTRON	INTRON	UBR3	ENSG00000144357.18	ENST00000272793.11	protein_coding	protein_coding	protein_coding	protein_coding	6	113	2	2.21781	2.39415	2.57049	0.00973452	0.00546213	0.0832222	0.0670258
chr8	100308597	100308697	4004413	0	-	0.25	[0,0.28]	chr8	366481	48	INTRON	INTRON	RNF19A	ENSG00000034677.13	ENST00000341084.7:ENST00000519527.5:ENST00000523167.1:ENST00000522369.5:ENST00000523481.5:ENST00000522182.1:ENST00000519342.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	113	2	2.21781	2.39415	2.57049	0.00973452	0.00546213	0.0832222	0.0670258
chr1	954170	954258	358379	0	-	0.579545	(0.57,1]	chr1	41285	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	NOC2L	ENSG00000188976.11	ENST00000327044.7:ENST00000477976.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	31	2	1.46969	2.39414	3.31859	0.0586892	0.00137292	0.167915	0.0340241
chr17	75387089	75387189	6837612	0	-	0.53	(0.515,0.57]	chr17	675716	539	INTRON	INTRON	GRB2	ENSG00000177885.15	ENST00000316615.9:ENST00000316804.10:ENST00000392562.5:ENST00000392564.5:ENST00000392563.5:ENST00000648046.1:ENST00000578961.5:ENST00000582582.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	80	2	2.29223	2.394115	2.496	0.00290031	0.00225531	0.047789	0.0436331
chr16	85627239	85627339	6416109	0	+	0.59	(0.57,1]	chr16	615481	135	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1:ENST00000405402.6:ENST00000411612.5:ENST00000253458.12:ENST00000393243.5	protein_coding	protein_coding	protein_coding	protein_coding	5	36	2	2.30825	2.3940900000000003	2.47993	0.007207	0.00499769	0.0756278	0.0617433
chr17	81595319	81595417	6849175	0	-	0.571429	(0.57,1]	chr17	678168	59	INTRON	INTRON	NPLOC4	ENSG00000182446.14	ENST00000331134.11:ENST00000374747.9:ENST00000574897.5:ENST00000572351.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	27	2	1.89351	2.39407	2.89463	0.0255126	0.00788262	0.133676	0.076155
chr1	19236344	19236443	387067	0	-	0.525253	(0.515,0.57]	chr1	46205	7	INTRON	INTRON	EMC1	ENSG00000127463.16	ENST00000477853.6:ENST00000688219.1:ENST00000690732.1:ENST00000690451.1:ENST00000688667.1:ENST00000685099.1:ENST00000685594.1:ENST00000690823.1:ENST00000692207.1:ENST00000688332.1:ENST00000375199.7:ENST00000375208.7:ENST00000486405.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	27	2	2.12971	2.394025	2.65834	0.0757903	0.0187418	0.194427	0.117523
chr1	28221262	28221361	409244	0	-	0.535354	(0.515,0.57]	chr1	49272	59	INTRON	INTRON	DNAJC8	ENSG00000126698.11	ENST00000263697.6:ENST00000489277.5:ENST00000482674.5:ENST00000488868.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	27	2	2.12971	2.394025	2.65834	0.0757903	0.0187418	0.194427	0.117523
chr1	202760114	202760214	620251	0	-	0.56	(0.515,0.57]	chr1	73619	3	SS5_PROX	SS5_PROX:INTRON	KDM5B	ENSG00000117139.18	ENST00000367265.9:ENST00000648338.1:ENST00000649542.1:ENST00000647757.1:ENST00000367264.7:ENST00000648473.1:ENST00000650569.1:ENST00000648056.1:ENST00000649770.1:ENST00000648469.1:ENST00000650417.1:ENST00000235790.9:ENST00000650422.1:ENST00000649321.1:ENST00000648099.1:ENST00000648738.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	27	2	2.12971	2.394025	2.65834	0.0757903	0.0187418	0.194427	0.117523
chr17	78778206	78778306	6845795	0	-	0.52	(0.515,0.57]	chr17	677345	414	INTRON	INTRON	CYTH1	ENSG00000108669.17	ENST00000589296.5:ENST00000361101.8:ENST00000446868.8:ENST00000591455.5:ENST00000591574.5:ENST00000592497.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	27	2	2.12971	2.394025	2.65834	0.0757903	0.0187418	0.194427	0.117523
chr22	28739191	28739290	7573491	0	-	0.525253	(0.515,0.57]	chr22	774437	6	INTRON	INTRON	CHEK2	ENSG00000183765.23	ENST00000416671.5:ENST00000348295.7:ENST00000404276.6:ENST00000425190.7:ENST00000649563.1:ENST00000405598.5:ENST00000382580.6:ENST00000650281.1:ENST00000433028.6:ENST00000439200.5:ENST00000650233.1:ENST00000398017.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	27	2	2.12971	2.394025	2.65834	0.0757903	0.0187418	0.194427	0.117523
chr8	124545530	124545628	3852792	0	+	0.520408	(0.515,0.57]	chr8	355073	24	EXON_MRNA	EXON_MRNA:INTRON	NDUFB9	ENSG00000147684.10	ENST00000606244.2:ENST00000677021.1:ENST00000276689.8:ENST00000677822.1:ENST00000518008.5:ENST00000522532.6:ENST00000517367.1:ENST00000524241.2:ENST00000677782.1:ENST00000676713.1:ENST00000677950.1:ENST00000518657.6:ENST00000678801.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	27	2	2.12971	2.394025	2.65834	0.0757903	0.0187418	0.194427	0.117523
chr9	112758546	112758646	4187699	0	+	0.53	(0.515,0.57]	chr9	381844	70	INTRON	INTRON	SNX30	ENSG00000148158.17	ENST00000374232.8	protein_coding	protein_coding	protein_coding	protein_coding	2	27	2	2.12971	2.394025	2.65834	0.0757903	0.0187418	0.194427	0.117523
chr7	149608903	149609003	3672465	0	-	0.6	(0.57,1]	chr7	340834	449	INTRON	INTRON	ZNF767P	ENSG00000133624.14	ENST00000463567.5:ENST00000472212.5:ENST00000684939.1:ENST00000690388.1:ENST00000486492.5:ENST00000481762.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	4	27	2	1.79063	2.39396	2.99729	0.0356001	0.00538023	0.15159	0.0642754
chr2	28942581	28942681	725678	0	+	0.33	(0.32,0.35]	chr2	83883	2	SS5_PROX	SS5_PROX:INTRON	WDR43	ENSG00000163811.12	ENST00000407426.8:ENST00000446643.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	49	2	1.94202	2.393855	2.84569	0.0486128	0.0121137	0.153946	0.0962599
chr5	95770799	95770898	2431650	0	+	0.333333	(0.32,0.35]	chr5	233684	2	INTRON	INTRON	RHOBTB3	ENSG00000164292.13	ENST00000379982.8:ENST00000504179.5:ENST00000510313.1	protein_coding	protein_coding	protein_coding	protein_coding	3	49	2	1.94202	2.393855	2.84569	0.0486128	0.0121137	0.153946	0.0962599
chr7	44881243	44881342	3528736	0	-	0.323232	(0.32,0.35]	chr7	329128	51	UTR3	UTR3:EXON_MRNA	PURB	ENSG00000146676.10	ENST00000395699.5	protein_coding	protein_coding	protein_coding	protein_coding	3	49	2	1.94202	2.393855	2.84569	0.0486128	0.0121137	0.153946	0.0962599
chr7	66131731	66131829	3324130	0	+	0.346939	(0.32,0.35]	chr7	309112	5	INTRON	INTRON	CRCP	ENSG00000241258.7	ENST00000360415.7:ENST00000431089.6:ENST00000398684.6:ENST00000395326.8:ENST00000338592.5:ENST00000486848.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	49	2	1.94202	2.393855	2.84569	0.0486128	0.0121137	0.153946	0.0962599
chrX	103216607	103216698	7697310	0	+	0.340659	(0.32,0.35]	chrX	787710	2	UTR3	UTR3:EXON_MRNA	BEX4	ENSG00000102409.10	ENST00000372695.6:ENST00000372691.3	protein_coding	protein_coding	protein_coding	protein_coding	3	49	2	1.94202	2.393855	2.84569	0.0486128	0.0121137	0.153946	0.0962599
chr4	39704878	39704978	1953059	0	+	0.56	(0.515,0.57]	chr4	195630	61	INTRON	INTRON	UBE2K	ENSG00000078140.14	ENST00000510934.5:ENST00000261427.10:ENST00000438068.6:ENST00000513231.5:ENST00000503368.5:ENST00000445950.2:ENST00000510719.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	22	235	2	2.17758	2.393845	2.61011	1.8991e-4	4.67696e-5	0.0120084	0.00593131
chr19	11091715	11091814	7016835	0	+	0.515152	(0.476,0.515]	chr19	697422	4	INTRON	INTRON	LDLR	ENSG00000130164.14	ENST00000557933.5:ENST00000558518.6:ENST00000545707.5:ENST00000535915.5:ENST00000455727.6:ENST00000557958.1:ENST00000560502.5:ENST00000558013.5:ENST00000252444.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	98	2	1.97669	2.393725	2.81076	0.0053159	0.00203568	0.0639031	0.0417667
chr3	182819059	182819159	1578129	0	+	0.45	(0.44,0.476]	chr3	162696	249	INTRON	INTRON	ATP11B	ENSG00000058063.16	ENST00000493826.1:ENST00000323116.10	protein_coding	protein_coding	protein_coding	protein_coding	5	59	2	2.04674	2.3936849999999996	2.74063	0.0176095	0.00803423	0.105143	0.0803474
chr9	37275570	37275670	4119213	0	+	0.32	(0.28,0.32]	chr9	375389	887	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000461038.5:ENST00000488607.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	64	2	2.1076	2.393675	2.67975	0.0252505	0.0133585	0.12011	0.100772
chr3	5123883	5123982	1353589	0	+	0.545455	(0.515,0.57]	chr3	142354	9	INTRON	INTRON	ARL8B	ENSG00000134108.14	ENST00000429403.5:ENST00000256496.8:ENST00000455168.5:ENST00000444332.1:ENST00000419534.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	60	2	1.5318	2.3936349999999997	3.25547	0.0258209	0.00261721	0.133676	0.0455413
chr2	44510756	44510856	766829	0	+	0.43	(0.408,0.44]	chr2	86780	536	INTRON	INTRON	CAMKMT	ENSG00000143919.15	ENST00000378494.8:ENST00000402247.5:ENST00000407131.5:ENST00000428993.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	60	2	1.69979	2.393585	3.08738	0.0310346	0.00478231	0.13151	0.0636201
chr20	47323560	47323660	7349180	0	-	0.43	(0.408,0.44]	chr20	749346	46	INTRON	INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000435836.5:ENST00000446894.5:ENST00000441977.1	protein_coding	protein_coding	protein_coding	protein_coding	5	60	2	1.69979	2.393585	3.08738	0.0310346	0.00478231	0.13151	0.0636201
chr10	63326199	63326299	4633992	0	-	0.52	(0.515,0.57]	chr10	426226	571	INTRON	INTRON	JMJD1C	ENSG00000171988.20	ENST00000399262.7:ENST00000633035.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	27	2	2.35125	2.39357	2.43589	0.0436431	0.0370871	0.162255	0.139194
chr12	123406424	123406519	5242806	0	+	0.515789	(0.515,0.57]	chr12	498217	10	INTRON	INTRON	KMT5A	ENSG00000183955.14	ENST00000402868.8:ENST00000437519.5:ENST00000437502.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	27	2	2.35125	2.39357	2.43589	0.0436431	0.0370871	0.162255	0.139194
chr13	114004632	114004732	5653572	0	-	0.52	(0.515,0.57]	chr13	538850	33	INTRON	INTRON	RASA3	ENSG00000185989.11	ENST00000334062.8	protein_coding	protein_coding	protein_coding	protein_coding	2	27	2	2.35125	2.39357	2.43589	0.0436431	0.0370871	0.162255	0.139194
chr16	2120677	2120777	6431202	0	-	0.52	(0.515,0.57]	chr16	618727	9	INTRON	INTRON	PKD1	ENSG00000008710.20	ENST00000262304.9:ENST00000423118.5	protein_coding	protein_coding	protein_coding	protein_coding	2	27	2	2.35125	2.39357	2.43589	0.0436431	0.0370871	0.162255	0.139194
chr16	58179782	58179881	6495006	0	-	0.545455	(0.515,0.57]	chr16	628344	49	INTRON	INTRON	CSNK2A2	ENSG00000070770.10	ENST00000262506.8:ENST00000565188.2:ENST00000566813.5:ENST00000677823.1:ENST00000567730.6:ENST00000563307.2:ENST00000562367.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	27	2	2.35125	2.39357	2.43589	0.0436431	0.0370871	0.162255	0.139194
chr2	8819392	8819491	1061852	0	-	0.545455	(0.515,0.57]	chr2	113284	2	INTRON	INTRON	KIDINS220	ENSG00000134313.17	ENST00000569008.2:ENST00000689369.1:ENST00000693394.1:ENST00000689852.1:ENST00000693432.1:ENST00000256707.8:ENST00000687912.1:ENST00000685097.1:ENST00000473731.5:ENST00000687894.1:ENST00000691030.1:ENST00000686906.1:ENST00000488729.5:ENST00000489024.5:ENST00000459813.2:ENST00000692419.1:ENST00000689531.1:ENST00000686179.1:ENST00000692889.1:ENST00000687240.1:ENST00000690607.1:ENST00000319688.5:ENST00000689114.1:ENST00000685274.1:ENST00000693366.1:ENST00000693249.1:ENST00000687526.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	27	2	2.35125	2.39357	2.43589	0.0436431	0.0370871	0.162255	0.139194
chr2	61335665	61335764	1129180	0	-	0.525253	(0.515,0.57]	chr2	121404	13	INTRON	INTRON	USP34	ENSG00000115464.15	ENST00000398571.7	protein_coding	protein_coding	protein_coding	protein_coding	2	27	2	2.35125	2.39357	2.43589	0.0436431	0.0370871	0.162255	0.139194
chr22	20780592	20780692	7558882	0	-	0.52	(0.515,0.57]	chr22	773112	145	INTRON	INTRON	PI4KA	ENSG00000241973.11	ENST00000255882.11:ENST00000466162.5:ENST00000484220.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	27	2	2.35125	2.39357	2.43589	0.0436431	0.0370871	0.162255	0.139194
chr5	179579767	179579864	2560072	0	+	0.515464	(0.515,0.57]	chr5	244741	23	INTRON	INTRON	RUFY1	ENSG00000176783.15	ENST00000319449.9:ENST00000393448.6:ENST00000393438.6:ENST00000437570.6:ENST00000508609.5:ENST00000514238.2:ENST00000502434.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	27	2	2.35125	2.39357	2.43589	0.0436431	0.0370871	0.162255	0.139194
chr7	5421789	5421889	3472064	0	-	0.54	(0.515,0.57]	chr7	324685	3	SS3_PROX	SS3_PROX:INTRON	TNRC18	ENSG00000182095.15	ENST00000399537.8:ENST00000430969.6:ENST00000399434.2	protein_coding	protein_coding	protein_coding	protein_coding	2	27	2	2.35125	2.39357	2.43589	0.0436431	0.0370871	0.162255	0.139194
chr7	36417690	36417785	3307285	0	+	0.526316	(0.515,0.57]	chr7	307127	1	INTRON	INTRON	ANLN	ENSG00000011426.11	ENST00000396068.6:ENST00000265748.7:ENST00000428612.5	protein_coding	protein_coding	protein_coding	protein_coding	2	27	2	2.35125	2.39357	2.43589	0.0436431	0.0370871	0.162255	0.139194
chr16	88757062	88757162	6539940	0	-	0.6	(0.57,1]	chr16	633998	72	INTRON	INTRON	PIEZO1	ENSG00000103335.22	ENST00000301015.14	protein_coding	protein_coding	protein_coding	protein_coding	6	43	2	1.52818	2.393505	3.25883	0.0508101	1.51392e-4	0.175989	0.0112689
chr16	89550103	89550200	6420786	0	+	0.597938	(0.57,1]	chr16	616282	5	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SPG7	ENSG00000197912.16	ENST00000647079.1:ENST00000646303.1:ENST00000643649.1:ENST00000644498.1:ENST00000645897.1:ENST00000643668.1:ENST00000644225.1:ENST00000645818.2:ENST00000645977.1:ENST00000645063.1:ENST00000646263.1:ENST00000643724.1:ENST00000644781.1:ENST00000644901.1:ENST00000645042.1:ENST00000646531.1:ENST00000646930.1:ENST00000644210.1:ENST00000646589.1:ENST00000268704.7:ENST00000646826.1:ENST00000646716.1:ENST00000643105.1:ENST00000645354.1:ENST00000642334.1:ENST00000647227.1:ENST00000646445.1:ENST00000643954.1:ENST00000646399.1:ENST00000644671.1:ENST00000643496.1:ENST00000647032.1:ENST00000644751.1:ENST00000645886.1:ENST00000644171.1:ENST00000566682.2:ENST00000645842.1:ENST00000642814.1:ENST00000643350.1:ENST00000645392.1:ENST00000647302.1:ENST00000647123.1:ENST00000643409.1:ENST00000642226.1:ENST00000646005.1:ENST00000642984.1:ENST00000647491.1:ENST00000645952.1:ENST00000569820.6:ENST00000566221.5:ENST00000645742.1:ENST00000644464.1:ENST00000561911.5:ENST00000561702.6:ENST00000565370.1:ENST00000647476.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	31	2	1.9042	2.393405	2.88261	0.0476976	0.00118949	0.153019	0.031662
chr9	112493114	112493213	4185851	0	+	0.363636	(0.35,0.378]	chr9	381813	56	INTRON	INTRON	KIAA1958	ENSG00000165185.15	ENST00000337530.11:ENST00000536272.5:ENST00000374244.3	protein_coding	protein_coding	protein_coding	protein_coding	7	94	2	2.12112	2.3933999999999997	2.66568	0.00496487	0.00369765	0.0615009	0.0561162
chr7	12350090	12350188	3484872	0	-	0.204082	[0,0.28]	chr7	325854	38	INTRON	INTRON	VWDE	ENSG00000146530.15	ENST00000275358.8:ENST00000452576.6:ENST00000521169.5:ENST00000649524.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	45	2	2.29142	2.393345	2.49527	0.0592143	0.0436497	0.189982	0.14882
chr1	42179213	42179312	430858	0	-	0.323232	(0.32,0.35]	chr1	52259	28	UTR3	UTR3:EXON_MRNA	FOXJ3	ENSG00000198815.9	ENST00000372573.5:ENST00000372572.5:ENST00000372571.5:ENST00000361776.5:ENST00000545068.5:ENST00000361346.6	protein_coding	protein_coding	protein_coding	protein_coding	5	79	2	2.3471	2.39333	2.43956	0.0156413	0.00352597	0.101393	0.0546236
chr17	66308225	66308325	6662353	0	+	0.33	(0.32,0.35]	chr17	650320	17	INTRON	INTRON	PRKCA	ENSG00000154229.12	ENST00000413366.8:ENST00000578063.5:ENST00000583361.1:ENST00000284384.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	91	2	1.9182	2.39328	2.86836	0.0141462	0.00250845	0.103512	0.0446195
chr12	123758619	123758717	5244574	0	+	0.469388	(0.44,0.476]	chr12	498660	7	UTR3	UTR3:EXON_MRNA	ATP6V0A2	ENSG00000185344.15	ENST00000330342.8:ENST00000543687.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	60	2	2.00609	2.393275	2.78046	0.0360127	0.0028389	0.152355	0.0473151
chr2	235531737	235531837	1041714	0	+	0.5	(0.476,0.515]	chr2	111222	68	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1:ENST00000402604.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	51	2	1.83961	2.393265	2.94692	0.0314489	0.00794331	0.13151	0.0797304
chr7	152136353	152136449	3678207	0	-	0.59375	(0.57,1]	chr7	341365	16	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	KMT2C	ENSG00000055609.21	ENST00000360104.8:ENST00000262189.11:ENST00000418061.2:ENST00000680877.1:ENST00000424877.6:ENST00000679560.1:ENST00000682040.1:ENST00000683640.1:ENST00000682116.1:ENST00000683120.1:ENST00000682824.1:ENST00000681923.1:ENST00000679393.1:ENST00000683200.1:ENST00000684768.1:ENST00000680029.1:ENST00000683337.1:ENST00000682629.1:ENST00000683178.1:ENST00000682137.1:ENST00000683502.1:ENST00000684261.1:ENST00000684685.1:ENST00000682283.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	45	2	1.83525	2.39324	2.95123	0.0110377	8.39007e-4	0.0873897	0.0263691
chr4	70959839	70959939	1971083	0	+	0.37	(0.35,0.378]	chr4	197590	4	INTRON	INTRON	MOB1B	ENSG00000173542.9	ENST00000502869.5:ENST00000509041.5:ENST00000309395.7:ENST00000396051.2:ENST00000511449.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	16	216	2	2.37272	2.39316	2.4136	0.00136305	1.31947e-4	0.0336321	0.00990281
chr17	66520356	66520456	6664476	0	+	0.52	(0.515,0.57]	chr17	650332	237	INTRON	INTRON	PRKCA	ENSG00000154229.12	ENST00000413366.8:ENST00000578063.5:ENST00000284384.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	74	2	1.69047	2.393135	3.0958	0.0195683	5.63557e-4	0.120063	0.0219303
chr3	160404071	160404171	1544640	0	+	0.39	(0.378,0.408]	chr3	160682	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:PRIMIRNA:INTRON	SMC4:MIR15B	ENSG00000113810.16:ENSG00000207779.1	ENST00000497311.5:ENST00000485645.5:ENST00000472282.5:ENST00000472991.5:ENST00000357388.8:ENST00000469762.5:ENST00000468653.5:ENST00000467468.5:ENST00000469858.5:ENST00000489573.5:ENST00000462787.5:ENST00000485867.5:ENST00000490207.5:ENST00000344722.5:ENST00000470240.5:ENST00000497984.5:ENST00000385045.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript:primary_miRNA	4	52	2	1.99678	2.39312	2.78946	0.0177959	0.0158859	0.113452	0.101453
chr2	65092177	65092277	1142582	0	-	0.52	(0.515,0.57]	chr2	122174	7	INTRON	INTRON	RAB1A	ENSG00000138069.18	ENST00000649427.1:ENST00000494188.1:ENST00000409784.8:ENST00000409892.5:ENST00000409751.1:ENST00000398529.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	11	112	2	2.1445	2.393105	2.64171	0.00130576	8.25264e-4	0.0331539	0.0262794
chr17	61729062	61729162	6807569	0	-	0.52	(0.515,0.57]	chr17	672516	124	INTRON	INTRON	BRIP1	ENSG00000136492.10	ENST00000259008.7:ENST00000682755.1:ENST00000682453.1:ENST00000683039.1:ENST00000682989.1:ENST00000682589.1:ENST00000683235.1:ENST00000683535.1:ENST00000682477.1:ENST00000684584.1:ENST00000682073.1:ENST00000684769.1:ENST00000577598.5:ENST00000684471.1:ENST00000682433.1:ENST00000682066.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	66	2	1.82142	2.393045	2.96467	0.0191173	8.94279e-4	0.108861	0.0273458
chr7	74759737	74759833	3336322	0	+	0.395833	(0.378,0.408]	chr7	310547	3	UTR3	UTR3:EXON_MRNA	GTF2I	ENSG00000263001.8	ENST00000650807.1:ENST00000690345.1:ENST00000573035.6:ENST00000614986.4:ENST00000620879.4:ENST00000621734.4:ENST00000621040.4:ENST00000614048.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	83	2	1.17446	2.39302	3.61158	0.0614357	8.34292e-4	0.193423	0.0266389
chr15	28240355	28240454	6123220	0	-	0.373737	(0.35,0.378]	chr15	583285	12	INTRON	INTRON	HERC2	ENSG00000128731.18	ENST00000261609.13	protein_coding	protein_coding	protein_coding	protein_coding	8	113	2	1.9021	2.39294	2.88378	0.011433	4.08693e-4	0.0886847	0.0181306
chr7	151513309	151513409	3674860	0	-	0.31	(0.28,0.32]	chr7	341207	148	INTRON	INTRON	RHEB	ENSG00000106615.10	ENST00000262187.10:ENST00000472642.5:ENST00000478470.5:ENST00000496004.5:ENST00000470370.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	86	2	2.36963	2.39294	2.41625	0.0157022	0.00419958	0.101453	0.0592209
chr5	32423593	32423692	2599117	0	-	0.383838	(0.378,0.408]	chr5	246966	31	INTRON	INTRON	ZFR	ENSG00000056097.16	ENST00000265069.13:ENST00000505366.1:ENST00000505204.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	52	2	1.78011	2.392895	3.00568	0.0356367	0.00811866	0.151629	0.0766625
chr2	241240863	241240962	1347780	0	-	0.434343	(0.408,0.44]	chr2	141528	3	INTRON	INTRON	HDLBP	ENSG00000115677.18	ENST00000391975.5:ENST00000427183.6:ENST00000310931.10:ENST00000391976.6:ENST00000373292.8:ENST00000487169.5:ENST00000479169.5:ENST00000427487.5:ENST00000459788.1:ENST00000471294.1:ENST00000452931.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	51	2	2.13157	2.3928849999999997	2.6542	0.0227514	0.0109031	0.117618	0.0923273
chr6	107432697	107432797	3181645	0	-	0.43	(0.408,0.44]	chr6	296346	980	INTRON	INTRON	PDSS2	ENSG00000164494.12	ENST00000369037.9:ENST00000369031.4	protein_coding	protein_coding	protein_coding	protein_coding	4	53	2	1.96534	2.39288	2.82042	0.0216499	0.0120121	0.11491	0.0962115
chr12	93733654	93733754	5190462	0	+	0.36	(0.35,0.378]	chr12	490912	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	CRADD	ENSG00000169372.13	ENST00000332896.8:ENST00000549615.5:ENST00000552983.5:ENST00000552033.5:ENST00000551065.5:ENST00000548483.5:ENST00000542893.2:ENST00000547383.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	46	2	1.98929	2.3928599999999998	2.79643	0.0417909	0.013543	0.147075	0.101363
chr22	40350559	40350657	7519835	0	+	0.367347	(0.35,0.378]	chr22	768253	4	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	ADSL	ENSG00000239900.14	ENST00000623632.4:ENST00000679723.1:ENST00000623063.3:ENST00000637666.2:ENST00000680978.1:ENST00000625194.4:ENST00000681159.1:ENST00000342312.9:ENST00000636714.1:ENST00000680444.1:ENST00000480775.3:ENST00000624503.1:ENST00000637669.1:ENST00000216194.11:ENST00000675622.1:ENST00000679656.1:ENST00000636265.1:ENST00000623978.3:ENST00000477111.2:ENST00000623287.4:ENST00000679609.1:ENST00000624474.1:ENST00000680378.1:ENST00000636124.1:ENST00000638161.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	46	2	1.98929	2.3928599999999998	2.79643	0.0417909	0.013543	0.147075	0.101363
chr2	135768572	135768671	876207	0	+	0.555556	(0.515,0.57]	chr2	98083	63	INTRON	INTRON	UBXN4	ENSG00000144224.17	ENST00000272638.14:ENST00000490163.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	43	2	1.88259	2.39285	2.90311	0.0251849	0.0094233	0.133519	0.0817766
chr20	26163288	26163388	7252247	0	+	0.57	(0.515,0.57]	chr20	736500	267	INTRON	INTRON	ENSG00000287211	ENSG00000287211.1	ENST00000657722.1	lncRNA	lncRNA	lncRNA	lncRNA	4	43	2	1.88259	2.39285	2.90311	0.0251849	0.0094233	0.133519	0.0817766
chr11	130232912	130233011	5053035	0	-	0.484848	(0.476,0.515]	chr11	476930	64	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	ZBTB44	ENSG00000196323.14	ENST00000357899.9:ENST00000527478.6:ENST00000445008.6:ENST00000525842.5:ENST00000397753.5:ENST00000530205.5:ENST00000529982.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	67	2	2.37448	2.3928450000000003	2.41121	0.0110342	0.00419067	0.0873897	0.0591344
chr1	120151590	120151689	533581	0	-	0.464646	(0.44,0.476]	chr1	62759	8	UTR3	UTR3:EXON_MRNA	SEC22B	ENSG00000265808.4	ENST00000578049.4	protein_coding	protein_coding	protein_coding	protein_coding	5	60	2	1.76195	2.392805	3.02366	0.0252608	0.00603307	0.12011	0.0700813
chr5	28859334	28859434	2330343	0	+	0.38	(0.378,0.408]	chr5	225135	488	INTRON	INTRON	LINC02109	ENSG00000259786.7	ENST00000658190.1	lncRNA	lncRNA	lncRNA	lncRNA	4	53	2	1.73164	2.392785	3.05393	0.0441773	0.00551532	0.149888	0.0672816
chr1	1614921	1615018	360336	0	-	0.597938	(0.57,1]	chr1	41858	13	EXON_LNCRNA	EXON_LNCRNA	ENSG00000272106	ENSG00000272106.1	ENST00000607222.1	lncRNA	lncRNA	lncRNA	lncRNA	7	51	2	2.1643	2.392665	2.62103	0.00941704	4.01771e-4	0.0861183	0.0185763
chr16	30251621	30251721	6472625	0	-	0.54	(0.515,0.57]	chr16	625566	54	INTRON	INTRON	NPIPB13	ENSG00000198064.14	ENST00000568053.5	protein_coding	protein_coding	protein_coding	protein_coding	13	141	2	1.98691	2.39264	2.79837	0.00195343	1.02014e-4	0.0411469	0.00912315
chr1	23022331	23022430	43786	0	+	0.50505	(0.476,0.515]	chr1	5252	20	INTRON	INTRON	KDM1A	ENSG00000004487.18	ENST00000692214.1:ENST00000686934.1:ENST00000689853.1:ENST00000465864.2:ENST00000691256.1:ENST00000688122.1:ENST00000692056.1:ENST00000692853.1:ENST00000689366.1:ENST00000686270.1:ENST00000685102.1:ENST00000690627.1:ENST00000686771.1:ENST00000692209.1:ENST00000686339.1:ENST00000691813.1:ENST00000693156.1:ENST00000688235.1:ENST00000692975.1:ENST00000687202.1:ENST00000691682.1:ENST00000691404.1:ENST00000691694.1:ENST00000688680.1:ENST00000356634.7:ENST00000400181.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	103	2	2.372	2.3926	2.4132	0.00417094	0.00103712	0.0570595	0.0295413
chr7	72900890	72900990	3330007	0	+	0.31	(0.28,0.32]	chr7	309565	94	INTRON	INTRON	POM121	ENSG00000196313.13	ENST00000627934.3:ENST00000395270.5	protein_coding	protein_coding	protein_coding	protein_coding	7	89	2	1.62417	2.39259	3.16101	0.0213853	0.0061861	0.123719	0.0677395
chr11	68461925	68462025	4817344	0	+	0.5	(0.476,0.515]	chr11	448907	7	INTRON	INTRON	PPP6R3	ENSG00000110075.15	ENST00000530427.5:ENST00000528635.5:ENST00000529907.5:ENST00000533127.5:ENST00000534534.5:ENST00000529344.5:ENST00000524845.5:ENST00000393800.7:ENST00000265637.8:ENST00000524904.5:ENST00000393801.7:ENST00000265636.9:ENST00000529710.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	85	2	1.87849	2.392585	2.90668	0.00992862	0.00164243	0.0877296	0.0369207
chr3	186933088	186933187	1586198	0	+	0.434343	(0.408,0.44]	chr3	164314	13	INTRON	INTRON	ST6GAL1	ENSG00000073849.16	ENST00000676786.1:ENST00000463542.1:ENST00000169298.8:ENST00000457772.6:ENST00000455441.5:ENST00000427315.5:ENST00000677292.1:ENST00000468614.1:ENST00000458216.5:ENST00000430309.5:ENST00000417392.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	87	2	1.47066	2.392505	3.31435	0.0457145	1.71418e-4	0.149888	0.0113605
chr11	72055814	72055913	4976589	0	-	0.464646	(0.44,0.476]	chr11	470130	46	INTRON	INTRON	NUMA1	ENSG00000137497.19	ENST00000393695.8:ENST00000358965.10:ENST00000351960.10:ENST00000613205.4:ENST00000537217.5:ENST00000540843.5:ENST00000534987.5:ENST00000543937.5:ENST00000535087.5:ENST00000368959.9:ENST00000541719.5:ENST00000366394.7:ENST00000541641.5:ENST00000537905.5:ENST00000535111.5:ENST00000535838.5:ENST00000546131.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	42	2	1.96602	2.39249	2.81896	0.0426807	0.0120766	0.148082	0.0962311
chr5	53909625	53909725	2616899	0	-	0.46	(0.44,0.476]	chr5	248833	219	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	42	2	1.96602	2.39249	2.81896	0.0426807	0.0120766	0.148082	0.0962311
chr18	77980236	77980335	6990157	0	-	0.454545	(0.44,0.476]	chr18	691894	2	INTRON	INTRON	LINC01029	ENSG00000265843.3	ENST00000657337.1:ENST00000669341.1:ENST00000671271.1:ENST00000668585.1:ENST00000666771.1:ENST00000667842.1:ENST00000661306.1:ENST00000662598.1:ENST00000662109.1:ENST00000662085.1:ENST00000583106.1:ENST00000582805.1:ENST00000656930.1	lncRNA	lncRNA	lncRNA	lncRNA	18	233	2	2.13515	2.39232	2.64949	5.93361e-4	8.79272e-5	0.0221865	0.00842626
chr2	47784780	47784878	777054	0	+	0.418367	(0.408,0.44]	chr2	87410	4	EXON_LNCRNA	EXON_LNCRNA:INTRON	MSH6	ENSG00000116062.18	ENST00000652107.1:ENST00000445503.5:ENST00000614496.4:ENST00000456246.1:ENST00000234420.11:ENST00000673922.1:ENST00000673637.1:ENST00000493177.1:ENST00000540021.6:ENST00000455383.5:ENST00000538136.1:ENST00000420813.5:ENST00000411819.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	59	2	1.58026	2.392315	3.20437	0.0444624	0.00306596	0.149888	0.0509893
chr1	16350656	16350756	382602	0	-	0.47	(0.44,0.476]	chr1	44888	349	INTRON	INTRON	FBXO42	ENSG00000037637.11	ENST00000375592.8	protein_coding	protein_coding	protein_coding	protein_coding	6	79	2	2.33899	2.392305	2.44562	0.0142027	0.00135452	0.0959987	0.0339121
chr1	54345349	54345449	463149	0	-	0.55	(0.515,0.57]	chr1	55780	96	INTRON	INTRON	SSBP3	ENSG00000157216.16	ENST00000610401.5:ENST00000357475.9:ENST00000371319.8:ENST00000417664.7:ENST00000533946.6:ENST00000326956.12:ENST00000371320.8:ENST00000525990.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	36	2	1.94945	2.39223	2.83501	0.0414068	0.0117686	0.161557	0.0894475
chr19	10684415	10684465	7013538	0	+	0.44	(0.408,0.44]	chr19	696835	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ILF3	ENSG00000129351.17	ENST00000449870.5:ENST00000587928.5:ENST00000407004.7:ENST00000589998.5:ENST00000250241.12:ENST00000590261.5:ENST00000588657.5:ENST00000592763.5:ENST00000593061.5:ENST00000590869.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	57	2	2.33431	2.39217	2.45003	0.0129219	0.00990006	0.0990564	0.0838372
chr1	149806350	149806449	549352	0	-	0.484848	(0.476,0.515]	chr1	64486	4	INTRON	INTRON	H2BC18	ENSG00000203814.7	ENST00000545683.1:ENST00000420462.1:ENST00000469483.1:ENST00000620458.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	103	2	2.06195	2.392115	2.72228	0.00539948	8.52725e-4	0.064414	0.0264928
chr10	32956510	32956610	4592693	0	-	0.51	(0.476,0.515]	chr10	423528	1	SS5_PROX	SS5_PROX:INTRON	ITGB1	ENSG00000150093.20	ENST00000609742.3:ENST00000678989.1:ENST00000677363.1:ENST00000302278.8:ENST00000396033.6:ENST00000417122.7:ENST00000676895.1:ENST00000678120.1:ENST00000676623.1:ENST00000678952.1:ENST00000677999.1:ENST00000679187.1:ENST00000678479.1:ENST00000676964.1:ENST00000488494.6:ENST00000488427.2:ENST00000678591.1:ENST00000678943.1:ENST00000437302.6:ENST00000678701.1:ENST00000678766.1:ENST00000676659.1:ENST00000677310.1:ENST00000474568.6:ENST00000676460.1:ENST00000475184.6:ENST00000484088.5:ENST00000534049.5:ENST00000528877.5:ENST00000414670.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	50	2	2.01953	2.392065	2.7646	0.0163662	0.0162075	0.109586	0.101453
chr7	137997559	137997658	3655696	0	-	0.484848	(0.476,0.515]	chr7	339370	638	INTRON	INTRON	CREB3L2	ENSG00000182158.16	ENST00000330387.11:ENST00000456390.5:ENST00000452463.5	protein_coding	protein_coding	protein_coding	protein_coding	4	50	2	2.01953	2.392065	2.7646	0.0163662	0.0162075	0.109586	0.101453
chr16	67770941	67771039	6505325	0	-	0.469388	(0.44,0.476]	chr16	629647	16	INTRON	INTRON	RANBP10	ENSG00000141084.12	ENST00000317506.8:ENST00000448631.6:ENST00000602506.5:ENST00000602677.5:ENST00000602525.5:ENST00000602638.5:ENST00000602815.5:ENST00000602887.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	56	2	2.33899	2.3920649999999997	2.44514	0.0142027	0.0087381	0.0959987	0.0845538
chr19	40250978	40251077	7183394	0	-	0.464646	(0.44,0.476]	chr19	726485	62	INTRON	INTRON	AKT2	ENSG00000105221.18	ENST00000392038.7:ENST00000424901.5:ENST00000391844.8:ENST00000584288.5:ENST00000311278.10:ENST00000579047.5:ENST00000578615.6:ENST00000601166.5:ENST00000492463.6:ENST00000537834.5:ENST00000491778.6:ENST00000487537.3:ENST00000441941.6:ENST00000672879.1:ENST00000486368.6:ENST00000596634.5:ENST00000452077.5:ENST00000392037.5:ENST00000416362.5:ENST00000578123.5:ENST00000672890.1:ENST00000423127.5:ENST00000358335.9:ENST00000456441.5:ENST00000583859.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	56	2	2.33899	2.3920649999999997	2.44514	0.0142027	0.0087381	0.0959987	0.0845538
chr7	67010084	67010184	3326775	0	+	0.47	(0.44,0.476]	chr7	309404	4	SS5_PROX	SS5_PROX:INTRON	TYW1	ENSG00000198874.14	ENST00000442959.5:ENST00000359626.10:ENST00000361660.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	56	2	2.33899	2.3920649999999997	2.44514	0.0142027	0.0087381	0.0959987	0.0845538
chr6	124996274	124996374	2951812	0	+	0.21	[0,0.28]	chr6	277679	3	SS3_PROX	SS3_PROX:INTRON	RNF217	ENSG00000146373.17	ENST00000521654.7:ENST00000560949.5:ENST00000519565.5:ENST00000454842.2:ENST00000368414.6:ENST00000519799.5:ENST00000359704.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	60	2	2.28885	2.39206	2.49527	0.0436497	0.0181093	0.14882	0.114853
chr4	39455535	39455627	2129313	0	-	0.445652	(0.44,0.476]	chr4	209919	2	INTRON	INTRON	RPL9	ENSG00000163682.17	ENST00000645496.2:ENST00000295955.14:ENST00000503277.6:ENST00000508595.6:ENST00000449470.6:ENST00000506581.6:ENST00000644328.1:ENST00000503040.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	21	278	2	2.08948	2.39199	2.6945	6.1854e-4	3.63174e-5	0.0223951	0.00510686
chr2	61392268	61392367	1129762	0	-	0.525253	(0.515,0.57]	chr2	121474	86	INTRON	INTRON	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000453133.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	131	2	1.95538	2.3919249999999996	2.82847	0.00361448	6.06586e-5	0.0533855	0.00643905
chr1	246095843	246095943	676590	0	-	0.38	(0.378,0.408]	chr1	79718	2	SS5_PROX	SS5_PROX:INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000391836.3:ENST00000464398.1:ENST00000453676.5:ENST00000462422.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	90	2	1.44787	2.391895	3.33592	0.0496837	1.591e-4	0.156383	0.0108481
chr1	35609245	35609342	421992	0	-	0.57732000000000006	(0.57,1]	chr1	50856	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	PSMB2	ENSG00000126067.12	ENST00000373237.4:ENST00000621781.4:ENST00000630477.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	76	2	1.92554	2.39189	2.85824	0.00236448	9.03658e-5	0.043778	0.00795396
chr16	28203095	28203194	6468377	0	-	0.474747	(0.44,0.476]	chr16	624597	217	INTRON	INTRON	XPO6	ENSG00000169180.12	ENST00000304658.10:ENST00000565698.5:ENST00000569951.1:ENST00000566073.1	protein_coding	protein_coding	protein_coding	protein_coding	4	50	2	1.75627	2.39189	3.02751	0.0380723	0.00715968	0.157702	0.0723634
chr22	23694818	23694918	7563045	0	-	0.47	(0.44,0.476]	chr22	773676	47	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	GUSBP11	ENSG00000228315.12	ENST00000422506.5:ENST00000445682.2:ENST00000452737.5:ENST00000451837.5:ENST00000421064.5:ENST00000651432.1	lncRNA	lncRNA	lncRNA	lncRNA	4	50	2	1.75627	2.39189	3.02751	0.0380723	0.00715968	0.157702	0.0723634
chr5	54302796	54302896	2620841	0	-	0.45	(0.44,0.476]	chr5	248862	166	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2:ENST00000505630.5:ENST00000505383.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	50	2	1.75627	2.39189	3.02751	0.0380723	0.00715968	0.157702	0.0723634
chr3	108047592	108047692	1768843	0	-	0.29	(0.28,0.32]	chr3	178904	3	SS3_PROX	SS3_PROX:INTRON	CD47	ENSG00000196776.17	ENST00000361309.6:ENST00000355354.13:ENST00000471694.1:ENST00000517766.5:ENST00000398258.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	87	2	1.72279	2.391865	3.06094	0.0496859	8.54457e-4	0.156383	0.0265194
chr2	224514972	224515072	1335631	0	-	0.33	(0.32,0.35]	chr2	140140	2	SS3_PROX	SS3_PROX:INTRON	CUL3	ENSG00000036257.14	ENST00000344951.8:ENST00000264414.9:ENST00000409096.5:ENST00000409777.5:ENST00000541548.5:ENST00000432260.2:ENST00000436172.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	95	2	2.1298	2.391835	2.65387	0.0141189	0.00137401	0.0959618	0.0340409
chr21	44048789	44048889	7415399	0	+	0.38	(0.378,0.408]	chr21	755795	105	INTRON	INTRON	TRAPPC10	ENSG00000160218.13	ENST00000291574.9:ENST00000380221.7:ENST00000422875.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	138	2	1.97577	2.391815	2.80786	0.00823929	9.26992e-5	0.0773252	0.00805823
chr13	52430265	52430365	5599127	0	-	0.38	(0.378,0.408]	chr13	535333	10	INTRON	INTRON	VPS36	ENSG00000136100.14	ENST00000650274.1:ENST00000611132.4:ENST00000378060.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	66	2	1.58985	2.391765	3.19368	0.0290335	0.00426861	0.141186	0.0573912
chr5	132924826	132924926	2724875	0	-	0.39	(0.378,0.408]	chr5	256321	201	INTRON	INTRON	AFF4	ENSG00000072364.13	ENST00000265343.10:ENST00000378595.7:ENST00000425658.1:ENST00000378593.6:ENST00000477369.5:ENST00000491831.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	66	2	1.58985	2.391765	3.19368	0.0290335	0.00426861	0.141186	0.0573912
chr2	197492527	197492625	1307094	0	-	0.214286	[0,0.28]	chr2	136785	11	INTRON	INTRON	HSPD1	ENSG00000144381.18	ENST00000388968.8:ENST00000426480.2:ENST00000345042.6:ENST00000452200.6:ENST00000679291.1:ENST00000677403.1:ENST00000678621.1:ENST00000678545.1:ENST00000676933.1:ENST00000678170.1:ENST00000476746.6:ENST00000678969.1:ENST00000428204.6:ENST00000418022.2:ENST00000439605.2:ENST00000440114.2:ENST00000461097.2:ENST00000677792.1:ENST00000678761.1:ENST00000677913.1:ENST00000677454.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	74	2	1.73226	2.3917	3.05114	0.0524108	0.0075493	0.160429	0.0773151
chr3	172064421	172064521	1559792	0	+	0.35	(0.32,0.35]	chr3	161527	171	INTRON	INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000421757.5:ENST00000469491.5:ENST00000336824.8:ENST00000423424.5:ENST00000416957.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	49	2	2.37794	2.39162	2.4053	0.0498601	0.0108284	0.156383	0.0920575
chr3	194458327	194458422	1890908	0	-	0.305263	(0.28,0.32]	chr3	189223	4	EXON_MRNA	EXON_MRNA:INTRON	ATP13A3	ENSG00000133657.17	ENST00000687055.1:ENST00000645538.1:ENST00000645319.2:ENST00000690810.1:ENST00000642744.2:ENST00000439040.6:ENST00000492983.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	95	2	1.38258	2.391495	3.40041	0.039453	0.00273088	0.161534	0.0467642
chr9	131178510	131178610	4216174	0	+	0.54	(0.515,0.57]	chr9	386629	1	SS5_PROX	SS5_PROX:INTRON	NUP214	ENSG00000126883.19	ENST00000695497.1:ENST00000695498.1:ENST00000695496.1:ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000525980.5:ENST00000526346.5:ENST00000531929.5:ENST00000651334.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	19	206	2	2.33252	2.3914600000000004	2.4504	2.64446e-4	6.37835e-5	0.0149879	0.00660941
chr14	31019625	31019724	5857806	0	-	0.353535	(0.35,0.378]	chr14	556512	45	INTRON	INTRON	STRN3	ENSG00000196792.12	ENST00000355683.9:ENST00000357479.10:ENST00000555358.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	76	2	1.56836	2.39146	3.21456	0.0240966	0.00420814	0.129929	0.0572185
chr6	4057957	4058047	2790079	0	+	0.333333	(0.32,0.35]	chr6	263551	4	INTRON	INTRON	PRPF4B	ENSG00000112739.17	ENST00000480058.5:ENST00000337659.11:ENST00000481109.5:ENST00000463634.6:ENST00000466185.1:ENST00000494674.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	67	2	2.25173	2.3914	2.53107	0.0180122	0.00860484	0.114436	0.0784134
chr9	111905408	111905508	4184537	0	+	0.4	(0.378,0.408]	chr9	381684	77	INTRON	INTRON	UGCG	ENSG00000148154.10	ENST00000374279.4:ENST00000489355.1:ENST00000495085.1:ENST00000490110.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	71	2	2.21238	2.3913	2.57022	0.0218124	0.00179058	0.11491	0.0392749
chr2	20256864	20256962	1075824	0	-	0.489796	(0.476,0.515]	chr2	114942	3	INTRON	INTRON	PUM2	ENSG00000055917.16	ENST00000338086.9:ENST00000361078.7:ENST00000440577.5	protein_coding	protein_coding	protein_coding	protein_coding	5	67	2	1.93059	2.3911800000000003	2.85177	0.023762	0.00169916	0.118822	0.0381936
chr9	131181690	131181789	4216206	0	+	0.30303	(0.28,0.32]	chr9	386630	29	INTRON	INTRON	NUP214	ENSG00000126883.19	ENST00000695497.1:ENST00000695498.1:ENST00000695496.1:ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000525980.5:ENST00000526346.5:ENST00000531929.5:ENST00000651334.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	119	2	2.25951	2.39116	2.52281	0.00397414	0.00385251	0.0577209	0.0542786
chr19	207232	207331	7108755	0	-	0.515152	(0.476,0.515]	chr19	713670	14	INTRON	INTRON	LINC01002	ENSG00000282508.2	ENST00000633344.1:ENST00000634022.1:ENST00000633773.1:ENST00000633199.1:ENST00000633363.1:ENST00000632351.1:ENST00000631832.1:ENST00000634025.1:ENST00000631772.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	3	42	2	1.8388	2.3911499999999997	2.9435	0.0564473	0.00929849	0.184423	0.0817766
chr9	37250393	37250493	4118961	0	+	0.47	(0.44,0.476]	chr9	375389	635	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000461038.5:ENST00000488607.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	107	2	2.32451	2.3911	2.45769	0.00241361	0.00166589	0.0453973	0.0369207
chr4	37843572	37843669	1945847	0	+	0.329897	(0.32,0.35]	chr4	194846	30	INTRON	INTRON	PGM2	ENSG00000169299.14	ENST00000381967.9:ENST00000515668.5:ENST00000505986.5:ENST00000512556.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	49	2	1.88468	2.3910549999999997	2.89743	0.0515071	0.0127608	0.176696	0.0926667
chr5	112161323	112161423	2451543	0	+	0.33	(0.32,0.35]	chr5	234897	9	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	EPB41L4A-AS1	ENSG00000224032.8	ENST00000663232.1:ENST00000427306.3:ENST00000508590.2:ENST00000688370.1:ENST00000442823.3:ENST00000690733.1:ENST00000413221.7	lncRNA	lncRNA	lncRNA	lncRNA	3	49	2	1.88468	2.3910549999999997	2.89743	0.0515071	0.0127608	0.176696	0.0926667
chr10	21568086	21568186	4404753	0	+	0.52	(0.515,0.57]	chr10	406446	99	INTRON	INTRON	MLLT10	ENSG00000078403.17	ENST00000651097.1:ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000650772.1:ENST00000651298.1:ENST00000495130.5:ENST00000377059.7:ENST00000476557.5:ENST00000462999.5:ENST00000430455.2:ENST00000479634.1:ENST00000480415.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	59	2	1.69407	2.39098	3.08789	0.0459452	4.83127e-4	0.149888	0.0199261
chr5	139311027	139311126	2499556	0	+	0.515152	(0.476,0.515]	chr5	238922	11	EXON_MRNA	EXON_MRNA:INTRON	MATR3	ENSG00000280987.4:ENSG00000015479.20	ENST00000509990.5:ENST00000506147.5:ENST00000512107.5:ENST00000361059.7:ENST00000394800.6:ENST00000502929.5:ENST00000504203.5:ENST00000509644.5:ENST00000512876.5:ENST00000513678.5:ENST00000513121.1:ENST00000504045.5:ENST00000504311.5:ENST00000502499.5:ENST00000510056.5:ENST00000511249.5:ENST00000394805.8:ENST00000507860.1:ENST00000509918.5:ENST00000503811.5:ENST00000511978.5:ENST00000618441.5:ENST00000514528.5:ENST00000504643.5:ENST00000515833.2:ENST00000514402.1:ENST00000505625.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	57	2	1.92984	2.3908050000000003	2.85177	0.0466474	0.00169916	0.151522	0.0381936
chr10	68049546	68049646	4637688	0	-	0.41	(0.408,0.44]	chr10	426436	46	INTRON	INTRON	HERC4	ENSG00000148634.16	ENST00000373700.9:ENST00000412272.6:ENST00000395198.7:ENST00000473533.6:ENST00000427635.6:ENST00000513996.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	77	2	1.62745	2.390795	3.15414	0.0145847	0.00469847	0.105962	0.0600108
chr15	52028972	52029071	6029120	0	+	0.343434	(0.32,0.35]	chr15	574427	7	INTRON	INTRON	MAPK6	ENSG00000069956.14	ENST00000560802.1:ENST00000691380.1:ENST00000558063.5:ENST00000560254.1:ENST00000681888.1:ENST00000261845.7:ENST00000680066.1:ENST00000680777.1:ENST00000558100.1:ENST00000680652.1:ENST00000558841.1:ENST00000558891.1:ENST00000560774.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	139	2	2.19707	2.390785	2.5845	0.00625395	4.12988e-4	0.0684171	0.0181365
chr8	38951665	38951765	3738047	0	+	0.37	(0.35,0.378]	chr8	347416	1	SS3_PROX	SS3_PROX:INTRON	PLEKHA2	ENSG00000169499.15	ENST00000521746.5:ENST00000616927.4:ENST00000617275.5:ENST00000616834.1:ENST00000518070.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	57	2	1.91706	2.390785	2.86451	0.026412	0.0109111	0.122506	0.0923273
chr1	220019410	220019487	638912	0	-	0.350649	(0.35,0.378]	chr1	75277	4	SS3_PROX	SS3_PROX:INTRON	EPRS1	ENSG00000136628.18	ENST00000366923.8:ENST00000609181.5:ENST00000477030.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	74	2	2.28125	2.390775	2.5003	0.0182271	0.00256148	0.107842	0.0466761
chr1	204536317	204536417	297621	0	+	0.29	(0.28,0.32]	chr1	34289	31	INTRON	INTRON	MDM4	ENSG00000198625.14	ENST00000367183.7:ENST00000391947.6:ENST00000454264.6:ENST00000612738.4:ENST00000614459.4:ENST00000616250.4:ENST00000367182.8:ENST00000463049.5:ENST00000470908.5:ENST00000471783.1:ENST00000367180.5:ENST00000507825.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	81	2	1.69688	2.39075	3.08462	0.0219684	0.0078976	0.123836	0.076155
chr5	88280630	88280730	2412179	0	+	0.36	(0.35,0.378]	chr5	232535	113	EXON_LNCRNA	EXON_LNCRNA:SS3_PROX:INTRON	TMEM161B-DT	ENSG00000247828.9	ENST00000504922.6:ENST00000661377.2:ENST00000658478.1:ENST00000501869.7:ENST00000688087.1:ENST00000654762.1:ENST00000666577.1:ENST00000658094.1:ENST00000661627.1:ENST00000663476.1:ENST00000669353.1:ENST00000688523.1:ENST00000664546.1:ENST00000688118.1:ENST00000663490.1:ENST00000689901.1:ENST00000653918.1:ENST00000668471.1:ENST00000659093.1:ENST00000504636.2:ENST00000666808.1:ENST00000671394.1:ENST00000662970.2:ENST00000661351.1:ENST00000688398.1:ENST00000660783.1:ENST00000670030.1:ENST00000664462.1:ENST00000659005.2:ENST00000670451.1:ENST00000670873.1:ENST00000501715.6:ENST00000657972.2:ENST00000658611.1:ENST00000692797.1:ENST00000504769.5:ENST00000653898.1:ENST00000667139.1:ENST00000684909.1:ENST00000656152.1:ENST00000659215.1:ENST00000669465.1:ENST00000659938.1:ENST00000507736.2:ENST00000667511.1:ENST00000665926.1:ENST00000513694.2:ENST00000693402.1:ENST00000510087.6:ENST00000506584.5:ENST00000669796.1:ENST00000512724.5:ENST00000668037.1:ENST00000657617.1:ENST00000686930.1:ENST00000667127.1:ENST00000685962.1	lncRNA	lncRNA	lncRNA	lncRNA	6	84	2	2.18494	2.39075	2.59656	0.00638551	0.0047516	0.0693551	0.0635784
chr7	152760625	152760725	3450527	0	+	0.37	(0.35,0.378]	chr7	322519	3	INTRON	INTRON	ACTR3B	ENSG00000133627.18	ENST00000377776.7:ENST00000256001.13:ENST00000397282.2	protein_coding	protein_coding	protein_coding	protein_coding	6	84	2	2.18494	2.39075	2.59656	0.00638551	0.0047516	0.0693551	0.0635784
chr6	147221358	147221457	2988877	0	+	0.333333	(0.32,0.35]	chr6	280001	149	INTRON	INTRON	STXBP5	ENSG00000164506.15	ENST00000321680.11:ENST00000367481.7:ENST00000546097.5:ENST00000367480.7	protein_coding	protein_coding	protein_coding	protein_coding	8	125	2	1.85014	2.390735	2.93133	0.0119731	5.89873e-4	0.0962115	0.0225024
chr16	29501773	29501873	6470579	0	-	0.5	(0.476,0.515]	chr16	625137	11	INTRON	INTRON	ENSG00000288632:NPIPB12	ENSG00000288632.1:ENSG00000169203.17	ENST00000675579.1:ENST00000550665.5:ENST00000551448.5:ENST00000547235.5:ENST00000550690.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:nonsense_mediated_decay:lncRNA	5	58	2	1.95469	2.39071	2.82673	0.0134403	0.0115753	0.0962115	0.0946278
chr7	111211909	111212009	3620601	0	-	0.54	(0.515,0.57]	chr7	337093	2480	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	50	2	1.58964	2.39071	3.19178	0.0408	0.00289534	0.1451	0.0494641
chr11	63864881	63864980	4801129	0	+	0.484848	(0.476,0.515]	chr11	445036	145	INTRON	INTRON	MARK2	ENSG00000072518.22	ENST00000377810.8:ENST00000361128.9:ENST00000508192.5:ENST00000350490.11:ENST00000402010.8:ENST00000502399.7:ENST00000425897.3:ENST00000679216.1:ENST00000513765.7:ENST00000543220.5	protein_coding	protein_coding	protein_coding	protein_coding	4	52	2	1.97402	2.390655	2.80729	0.0206778	0.0126008	0.110999	0.0980703
chr17	75220105	75220205	6674411	0	+	0.5	(0.476,0.515]	chr17	651381	14	INTRON	INTRON	NUP85	ENSG00000125450.11	ENST00000245544.9:ENST00000583948.5:ENST00000579324.5:ENST00000449421.6:ENST00000581104.5:ENST00000579298.5:ENST00000578830.5:ENST00000583877.5:ENST00000577561.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	57	2	1.53534	2.39065	3.24596	0.0476737	0.00322919	0.170116	0.0507087
chr21	14527080	14527180	7428012	0	-	0.33	(0.32,0.35]	chr21	757769	33	INTRON	INTRON	SAMSN1	ENSG00000155307.19	ENST00000647101.1:ENST00000644288.1:ENST00000400564.5:ENST00000400566.6:ENST00000285670.7:ENST00000619120.4:ENST00000493640.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	100	2	1.96868	2.39065	2.81262	0.00749728	0.00311322	0.0773151	0.0498063
chr4	48768779	48768879	2139509	0	-	0.35	(0.32,0.35]	chr4	211018	409	INTRON	INTRON	FRYL	ENSG00000075539.15	ENST00000358350.9:ENST00000503238.6:ENST00000507711.5:ENST00000502520.5:ENST00000505437.5:ENST00000514783.5:ENST00000509886.5:ENST00000515684.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	79	2	2.03198	2.39064	2.7493	0.0193728	0.00296357	0.108916	0.0500135
chr16	48368686	48368785	6483894	0	-	0.474747	(0.44,0.476]	chr16	627085	29	INTRON	INTRON	SIAH1	ENSG00000196470.12	ENST00000568007.5:ENST00000394725.3:ENST00000563745.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	45	2	2.38519	2.3906150000000004	2.39604	0.0404291	0.012193	0.161534	0.0910127
chr17	81589504	81589604	6849116	0	-	0.46	(0.44,0.476]	chr17	678167	4	SS3_PROX	SS3_PROX:INTRON	NPLOC4	ENSG00000182446.14	ENST00000331134.11:ENST00000374747.9:ENST00000574897.5:ENST00000572351.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	81	2	2.10892	2.3905950000000002	2.67227	0.0132897	0.0010793	0.0944742	0.0300133
chr1	151432139	151432239	554685	0	-	0.43	(0.408,0.44]	chr1	65538	9	INTRON	INTRON	POGZ	ENSG00000143442.22	ENST00000271715.7:ENST00000358476.7:ENST00000392723.5:ENST00000368863.6:ENST00000409503.5:ENST00000531094.5:ENST00000491586.5:ENST00000485040.5:ENST00000467287.5:ENST00000533461.5:ENST00000533351.5:ENST00000450842.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	52	2	2.26617	2.390545	2.51492	0.0329839	0.00649402	0.133816	0.0734343
chr12	49371989	49372089	5132993	0	+	0.34	(0.32,0.35]	chr12	483963	3	INTRON	INTRON	SPATS2	ENSG00000123352.18	ENST00000550997.5:ENST00000549538.5:ENST00000549412.5:ENST00000550643.5:ENST00000548654.5:ENST00000548710.5:ENST00000549179.5:ENST00000548377.5:ENST00000549298.5:ENST00000552918.6:ENST00000549375.5:ENST00000553127.5:ENST00000321898.10:ENST00000551540.5:ENST00000548777.5:ENST00000552171.1:ENST00000547865.5:ENST00000548388.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	36	2	2.37794	2.39051	2.40308	0.0498601	0.0417732	0.161736	0.156383
chr14	61062966	61063066	5739932	0	+	0.35	(0.32,0.35]	chr14	545047	96	INTRON	INTRON	SLC38A6	ENSG00000139974.16	ENST00000354886.6:ENST00000525723.6:ENST00000491344.7:ENST00000451406.5:ENST00000529345.6:ENST00000526539.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	36	2	2.37794	2.39051	2.40308	0.0498601	0.0417732	0.161736	0.156383
chr16	18145454	18145554	6454088	0	-	0.33	(0.32,0.35]	chr16	621960	1417	INTRON	INTRON	ENSG00000259929:ENSG00000260242	ENSG00000259929.5:ENSG00000260242.1	ENST00000567304.1:ENST00000563866.1	lncRNA	lncRNA	lncRNA	lncRNA	2	36	2	2.37794	2.39051	2.40308	0.0498601	0.0417732	0.161736	0.156383
chr19	13124914	13125013	7022714	0	+	0.333333	(0.32,0.35]	chr19	698366	61	INTRON	INTRON	NACC1	ENSG00000160877.6	ENST00000586171.2:ENST00000292431.5	protein_coding	protein_coding	protein_coding	protein_coding	2	36	2	2.37794	2.39051	2.40308	0.0498601	0.0417732	0.161736	0.156383
chr6	126021979	126022078	2956428	0	+	0.323232	(0.32,0.35]	chr6	278051	3	INTRON	INTRON	TRMT11	ENSG00000066651.20	ENST00000479748.5:ENST00000368332.7:ENST00000648977.1:ENST00000334379.11:ENST00000466316.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	36	2	2.37794	2.39051	2.40308	0.0498601	0.0417732	0.161736	0.156383
chr7	105243614	105243714	3602446	0	-	0.33	(0.32,0.35]	chr7	336137	367	INTRON	INTRON	SRPK2	ENSG00000135250.17	ENST00000393651.8:ENST00000357311.7:ENST00000489828.5:ENST00000482897.5:ENST00000460391.5:ENST00000462282.5:ENST00000465112.5:ENST00000482862.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	36	2	2.37794	2.39051	2.40308	0.0498601	0.0417732	0.161736	0.156383
chr12	55982415	55982515	5144948	0	+	0.48	(0.476,0.515]	chr12	485924	11	INTRON	INTRON	RAB5B	ENSG00000111540.16	ENST00000553116.5:ENST00000549505.5:ENST00000360299.10:ENST00000546810.1:ENST00000548068.5:ENST00000549915.5:ENST00000448789.2:ENST00000551459.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	93	2	2.21025	2.390415	2.57058	0.00913757	7.29232e-4	0.0812335	0.0246094
chr11	83083092	83083191	4840539	0	+	0.474747	(0.44,0.476]	chr11	451472	9	INTRON	INTRON	RAB30-DT	ENSG00000246067.9	ENST00000658004.1:ENST00000527627.5:ENST00000533528.1:ENST00000658917.1:ENST00000669005.1:ENST00000665456.1	lncRNA	lncRNA	lncRNA	lncRNA	4	58	2	2.14573	2.390405	2.63508	0.0238593	0.00501007	0.129075	0.0618077
chr2	107696838	107696938	1205516	0	-	0.3	(0.28,0.32]	chr2	128516	457	INTRON	INTRON	LINC01885	ENSG00000237880.2	ENST00000654481.1	lncRNA	lncRNA	lncRNA	lncRNA	8	136	2	1.87474	2.39027	2.9058	0.0115687	8.06216e-4	0.0962115	0.0263344
chr21	9343632	9343732	7367569	0	+	0.5	(0.476,0.515]	chr21	751931	1	SS5_PROX	SS5_PROX:INTRON	ENSG00000278932	ENSG00000278932.5	ENST00000622961.3:ENST00000686553.1:ENST00000691955.1:ENST00000625153.3:ENST00000692626.1:ENST00000685951.1:ENST00000686510.1:ENST00000692884.1	lncRNA	lncRNA	lncRNA	lncRNA	7	93	2	2.10798	2.3902	2.67242	0.00628634	0.00136918	0.0722266	0.0336718
chr6	4795703	4795803	2791055	0	+	0.32	(0.28,0.32]	chr6	263598	185	INTRON	INTRON	CDYL	ENSG00000153046.18	ENST00000328908.9:ENST00000491864.1:ENST00000440139.5:ENST00000483019.1:ENST00000397588.8:ENST00000472453.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	151	2	2.35566	2.390145	2.42463	0.0038391	0.00107687	0.0542786	0.0300133
chr1	45494461	45494560	439563	0	-	0.424242	(0.408,0.44]	chr1	53207	7	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	CCDC163	ENSG00000280670.3	ENST00000626177.2:ENST00000629482.3:ENST00000625766.2:ENST00000629009.2:ENST00000626657.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	43	2	2.11447	2.39013	2.66579	0.0285207	0.019342	0.12666	0.119831
chr6	157932472	157932572	3016875	0	+	0.42	(0.408,0.44]	chr6	281436	3	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	SNX9	ENSG00000130340.17	ENST00000680863.1:ENST00000679814.1:ENST00000680464.1:ENST00000681186.1:ENST00000679732.1:ENST00000681183.1:ENST00000681534.1:ENST00000681651.1:ENST00000680089.1:ENST00000680078.1:ENST00000680974.1:ENST00000680095.1:ENST00000681138.1:ENST00000392185.8:ENST00000679790.1:ENST00000680495.1:ENST00000679691.1:ENST00000681881.1:ENST00000681469.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	61	2	2.19398	2.39011	2.58624	0.0273686	0.0043348	0.123904	0.0600652
chr17	32480830	32480929	6598723	0	+	0.353535	(0.35,0.378]	chr17	642028	3	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PSMD11	ENSG00000108671.11	ENST00000649012.1:ENST00000457654.6:ENST00000261712.8:ENST00000493026.2:ENST00000469475.1:ENST00000585265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	16	226	2	2.09806	2.390015	2.68197	0.00209212	4.62031e-5	0.0412745	0.00553785
chr7	129615714	129615814	3412161	0	+	0.35	(0.32,0.35]	chr7	319009	35	INTRON	INTRON	NRF1	ENSG00000106459.15	ENST00000393232.6:ENST00000477428.5:ENST00000454688.5:ENST00000223190.8:ENST00000311967.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	59	2	2.14793	2.390015	2.6321	0.0268	0.0110079	0.123349	0.0927187
chr2	111436407	111436507	1211214	0	-	0.34	(0.32,0.35]	chr2	128899	56	INTRON	INTRON	MIR4435-2HG	ENSG00000172965.17	ENST00000645030.2:ENST00000642191.1:ENST00000673798.1:ENST00000645051.2:ENST00000673649.1:ENST00000669658.1:ENST00000669917.1:ENST00000661559.1:ENST00000653687.1:ENST00000667670.1:ENST00000609220.2:ENST00000656760.1:ENST00000609902.6:ENST00000666683.1:ENST00000674070.1:ENST00000662335.1:ENST00000664422.1:ENST00000673775.1:ENST00000674092.1:ENST00000673958.1:ENST00000658936.1:ENST00000662635.1:ENST00000666204.1:ENST00000659458.1:ENST00000664443.1:ENST00000670295.1:ENST00000661655.1:ENST00000666390.1:ENST00000659079.1:ENST00000660442.1:ENST00000664009.1:ENST00000439362.6:ENST00000654473.1:ENST00000664999.1:ENST00000673728.1:ENST00000659791.1:ENST00000666144.1:ENST00000659933.1:ENST00000670715.1:ENST00000653568.1:ENST00000643013.1:ENST00000673866.1:ENST00000443467.6:ENST00000669875.1:ENST00000673653.1:ENST00000673988.1:ENST00000661945.1:ENST00000669515.1:ENST00000431385.6:ENST00000656416.1:ENST00000674037.1:ENST00000432818.5:ENST00000674013.1:ENST00000444301.5:ENST00000673964.1:ENST00000673845.1:ENST00000673756.1:ENST00000673960.1:ENST00000673804.1:ENST00000673632.1:ENST00000453478.2:ENST00000673937.1:ENST00000673654.1:ENST00000409569.2:ENST00000674087.1:ENST00000419736.5:ENST00000673840.1:ENST00000674045.1:ENST00000673821.1:ENST00000643766.1:ENST00000308604.5:ENST00000674026.1:ENST00000604981.5:ENST00000603310.5:ENST00000673894.1:ENST00000442293.5:ENST00000441075.1	lncRNA	lncRNA	lncRNA	lncRNA	4	58	2	1.88255	2.38999	2.89743	0.0269187	0.0127608	0.135288	0.0926667
chr2	232807746	232807844	1038378	0	+	0.520408	(0.515,0.57]	chr2	110765	7	INTRON	INTRON	GIGYF2	ENSG00000204120.16	ENST00000629305.2:ENST00000409480.5:ENST00000373563.9:ENST00000409547.5:ENST00000423659.5:ENST00000409196.7:ENST00000409451.7:ENST00000440945.5:ENST00000677591.1:ENST00000678230.1:ENST00000678339.1:ENST00000677450.1:ENST00000678466.1:ENST00000678885.1:ENST00000676848.1:ENST00000482952.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	43	2	1.94493	2.38997	2.83501	0.0204583	0.0117686	0.122204	0.0894475
chr1	150347088	150347186	221618	0	+	0.214286	[0,0.28]	chr1	25030	2	INTRON	INTRON	PRPF3	ENSG00000117360.13	ENST00000324862.7:ENST00000467329.5:ENST00000476970.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	44	2	2.20927	2.3898	2.57033	0.0794763	0.0305273	0.19979	0.143385
chr11	90202008	90202107	5016318	0	-	0.222222	[0,0.28]	chr11	473171	17	UTR3	UTR3:EXON_MRNA	CHORDC1	ENSG00000110172.12	ENST00000320585.11:ENST00000529987.5:ENST00000457199.6:ENST00000533724.5:ENST00000529726.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	44	2	2.20927	2.3898	2.57033	0.0794763	0.0305273	0.19979	0.143385
chr6	113952581	113952678	3195542	0	-	0.268041	[0,0.28]	chr6	297709	30	INTRON	INTRON	HDAC2	ENSG00000196591.12	ENST00000519065.6:ENST00000368632.6:ENST00000519108.5:ENST00000523334.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	44	2	2.20927	2.3898	2.57033	0.0794763	0.0305273	0.19979	0.143385
chr7	117019210	117019310	3386646	0	+	0.25	[0,0.28]	chr7	317137	38	INTRON	INTRON	ST7:ST7-OT4	ENSG00000004866.22:ENSG00000214188.9	ENST00000393446.6:ENST00000265437.9:ENST00000393451.7:ENST00000438863.5:ENST00000393449.5:ENST00000443979.5:ENST00000323984.8:ENST00000417919.5:ENST00000446490.5:ENST00000471110.5:ENST00000422922.5:ENST00000432298.5:ENST00000449366.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:nonsense_mediated_decay:lncRNA	2	44	2	2.20927	2.3898	2.57033	0.0794763	0.0305273	0.19979	0.143385
chr9	125017502	125017601	4350714	0	-	0.252525	[0,0.28]	chr9	399484	136	INTRON	INTRON	SCAI	ENSG00000173611.18	ENST00000336505.11:ENST00000373549.8:ENST00000477186.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	44	2	2.20927	2.3898	2.57033	0.0794763	0.0305273	0.19979	0.143385
chr1	65281998	65282097	135813	0	+	0.555556	(0.515,0.57]	chr1	15346	167	INTRON	INTRON	DNAJC6	ENSG00000116675.16	ENST00000463018.5:ENST00000494710.6:ENST00000263441.11:ENST00000395325.7:ENST00000483402.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	43	2	1.7492	2.389785	3.03037	0.0382504	0.00608732	0.15832	0.0676501
chr18	80035549	80035648	6937928	0	+	0.545455	(0.515,0.57]	chr18	686145	10	EXON_MRNA	EXON_MRNA:INTRON	RBFA	ENSG00000101546.13	ENST00000586847.1:ENST00000306735.10:ENST00000591612.1:ENST00000262197.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	43	2	1.7492	2.389785	3.03037	0.0382504	0.00608732	0.15832	0.0676501
chr22	20525363	20525463	7479528	0	+	0.52	(0.515,0.57]	chr22	762964	6	INTRON	INTRON	MED15	ENSG00000099917.17	ENST00000445987.5:ENST00000444094.5:ENST00000414658.5:ENST00000486656.5:ENST00000433831.5:ENST00000432052.5:ENST00000292733.11:ENST00000263205.11:ENST00000477824.5:ENST00000406969.5:ENST00000382974.6:ENST00000441501.5:ENST00000438962.1:ENST00000445189.5:ENST00000451058.5:ENST00000473028.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	43	2	1.7492	2.389785	3.03037	0.0382504	0.00608732	0.15832	0.0676501
chr3	185937120	185937220	1886595	0	-	0.55	(0.515,0.57]	chr3	188644	28	EXON_MRNA	EXON_MRNA:INTRON	TRA2B	ENSG00000136527.19	ENST00000453386.7:ENST00000487615.5:ENST00000456380.5:ENST00000382191.4:ENST00000465245.1:ENST00000485530.5:ENST00000480461.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	43	2	1.7492	2.389785	3.03037	0.0382504	0.00608732	0.15832	0.0676501
chr1	212863796	212863869	309893	0	+	0.342466	(0.32,0.35]	chr1	35787	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	FLVCR1	ENSG00000162769.13	ENST00000366971.9:ENST00000419102.1:ENST00000579295.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	79	2	2.30731	2.389755	2.4722	0.0176772	0.00307237	0.10525	0.0509893
chr1	65292277	65292377	135916	0	+	0.37	(0.35,0.378]	chr1	15346	270	INTRON	INTRON	DNAJC6	ENSG00000116675.16	ENST00000463018.5:ENST00000494710.6:ENST00000263441.11:ENST00000395325.7:ENST00000483402.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	84	2	1.19657	2.389715	3.58286	0.0724016	6.77448e-4	0.188044	0.0236287
chr22	19390522	19390620	7554005	0	-	0.438776	(0.408,0.44]	chr22	772268	16	INTRON	INTRON	HIRA:C22orf39	ENSG00000100084.14:ENSG00000242259.9	ENST00000263208.5:ENST00000340170.8:ENST00000509549.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	68	2	2.08486	2.389715	2.69457	0.0145898	0.00331036	0.0981689	0.0527031
chr10	68020562	68020662	4637389	0	-	0.52	(0.515,0.57]	chr10	426398	60	INTRON	INTRON	HERC4	ENSG00000148634.16	ENST00000277817.10:ENST00000373700.9:ENST00000412272.6:ENST00000395198.7:ENST00000473533.6:ENST00000427635.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	44	2	2.17039	2.38969	2.60899	0.0232669	0.00900252	0.118148	0.0851009
chr19	5628280	5628379	7005348	0	+	0.40404	(0.378,0.408]	chr19	694957	14	INTRON	INTRON	SAFB	ENSG00000160633.13	ENST00000589863.5:ENST00000588852.2:ENST00000591666.5:ENST00000292123.9:ENST00000592224.5:ENST00000586934.5:ENST00000454510.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	70	2	2.35103	2.38965	2.42827	0.014158	0.00336942	0.0959618	0.0532965
chr8	127739613	127739707	3860003	0	+	0.351064	(0.35,0.378]	chr8	355366	2	INTRON	INTRON	MYC	ENSG00000136997.21	ENST00000259523.10:ENST00000651626.1:ENST00000377970.6:ENST00000524013.2:ENST00000621592.8:ENST00000652288.1	protein_coding	protein_coding	protein_coding	protein_coding	5	68	2	2.30859	2.38962	2.47065	0.0386172	0.00276702	0.142656	0.0486894
chr1	31290516	31290615	413228	0	-	0.434343	(0.408,0.44]	chr1	49803	7	INTRON	INTRON	SNRNP40	ENSG00000060688.13	ENST00000263694.9	protein_coding	protein_coding	protein_coding	protein_coding	6	78	2	1.62122	2.389605	3.15799	0.0394247	3.8998e-4	0.143072	0.0177751
chr21	34888394	34888492	7447270	0	-	0.428571	(0.408,0.44]	chr21	759861	14	UTR5	UTR5:EXON_MRNA:INTRON	RUNX1	ENSG00000159216.19	ENST00000300305.7:ENST00000675419.1:ENST00000437180.5:ENST00000344691.8:ENST00000482318.5:ENST00000358356.9:ENST00000399237.6:ENST00000455571.5:ENST00000475045.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	20	237	2	1.87447	2.38959	2.90471	0.00127882	4.88393e-5	0.0332651	0.00606638
chr20	35728712	35728811	7336413	0	-	0.535354	(0.515,0.57]	chr20	747462	32	INTRON	INTRON	RBM39	ENSG00000131051.24	ENST00000253363.11:ENST00000639702.1:ENST00000656873.1:ENST00000463004.5:ENST00000361162.10:ENST00000461283.5:ENST00000403542.6:ENST00000338163.10:ENST00000528062.7:ENST00000429968.5:ENST00000444878.5:ENST00000665058.1:ENST00000492779.5:ENST00000448303.5:ENST00000374038.7:ENST00000412738.5:ENST00000434927.5:ENST00000425184.5:ENST00000481037.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	58	2	2.01561	2.389575	2.76354	0.0147344	0.00518674	0.0983813	0.0654085
chr19	3963242	3963342	7118975	0	-	0.53	(0.515,0.57]	chr19	716026	2	SS5_PROX	SS5_PROX:INTRON	DAPK3	ENSG00000167657.14	ENST00000545797.7:ENST00000301264.7	protein_coding	protein_coding	protein_coding	protein_coding	6	69	2	2.20213	2.38955	2.57697	0.00853365	0.00153959	0.0780043	0.0362709
chr6	87222866	87222963	2913938	0	+	0.412371	(0.408,0.44]	chr6	275310	2	EXON_LNCRNA	EXON_LNCRNA:INTRON	ZNF292	ENSG00000188994.13	ENST00000369577.8:ENST00000369578.6:ENST00000518845.1:ENST00000339907.8:ENST00000496806.2:ENST00000524067.5:ENST00000485016.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	51	2	1.69172	2.38955	3.08738	0.0486032	0.00478231	0.153946	0.0636201
chr6	157894036	157894136	3016476	0	+	0.34	(0.32,0.35]	chr6	281385	50	INTRON	INTRON	SNX9	ENSG00000130340.17	ENST00000680863.1:ENST00000679814.1:ENST00000680464.1:ENST00000681186.1:ENST00000679732.1:ENST00000681183.1:ENST00000681534.1:ENST00000681651.1:ENST00000680089.1:ENST00000680078.1:ENST00000680974.1:ENST00000680095.1:ENST00000680015.1:ENST00000681138.1:ENST00000392185.8:ENST00000679790.1:ENST00000680495.1:ENST00000679691.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	59	2	1.61669	2.38953	3.16237	0.0578816	0.00550276	0.188651	0.0648867
chr11	46844421	46844521	4948748	0	-	0.38	(0.378,0.408]	chr11	463857	177	INTRON	INTRON	CKAP5	ENSG00000175216.15	ENST00000529230.6:ENST00000312055.9:ENST00000525248.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	43	2	2.17608	2.38952	2.60296	0.0267851	0.0218783	0.123836	0.123349
chr10	113910128	113910227	4527410	0	+	0.252525	[0,0.28]	chr10	417479	17	UTR3	UTR3:EXON_MRNA	NHLRC2	ENSG00000196865.4	ENST00000369301.3	protein_coding	protein_coding	protein_coding	protein_coding	9	148	2	1.60395	2.389445	3.17494	0.0203292	0.00114737	0.121586	0.0308663
chr14	35005793	35005892	5691271	0	+	0.393939	(0.378,0.408]	chr14	541265	13	INTRON	INTRON	SRP54	ENSG00000100883.13	ENST00000556994.5:ENST00000678836.1:ENST00000546080.6:ENST00000555746.6:ENST00000678963.1:ENST00000677561.1:ENST00000678477.1:ENST00000677621.1:ENST00000553923.2:ENST00000679045.1:ENST00000678519.1:ENST00000678627.1:ENST00000216774.11:ENST00000555557.5:ENST00000678274.1:ENST00000556380.3:ENST00000677647.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	43	2	2.11103	2.38944	2.66785	0.0266911	0.0224639	0.134419	0.11692
chr12	111432063	111432163	5227849	0	+	0.34	(0.32,0.35]	chr12	495494	128	INTRON	INTRON	SH2B3	ENSG00000111252.11	ENST00000341259.7:ENST00000550925.2	protein_coding	protein_coding	protein_coding	protein_coding	6	91	2	1.91908	2.38941	2.85974	0.0169079	0.00186579	0.103859	0.0399675
chr12	2850669	2850769	5065755	0	+	0.52	(0.515,0.57]	chr12	478062	93	INTRON	INTRON	ITFG2	ENSG00000111203.13	ENST00000644123.1:ENST00000644517.1:ENST00000645513.1:ENST00000643039.1:ENST00000537710.5	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	4	48	2	2.15051	2.38934	2.62817	0.0238113	0.004048	0.118889	0.0578376
chr3	19963648	19963748	1376201	0	+	0.52	(0.515,0.57]	chr3	145051	104	INTRON	INTRON	RAB5A	ENSG00000144566.11	ENST00000273047.9:ENST00000412966.5:ENST00000446547.5:ENST00000422242.1:ENST00000469122.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	48	2	2.15051	2.38934	2.62817	0.0238113	0.004048	0.118889	0.0578376
chr9	131185246	131185344	4216242	0	+	0.387755	(0.378,0.408]	chr9	386631	10	EXON_MRNA	EXON_MRNA:INTRON	NUP214	ENSG00000126883.19	ENST00000695497.1:ENST00000695498.1:ENST00000695496.1:ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000525980.5:ENST00000526346.5:ENST00000531929.5:ENST00000651334.1:ENST00000524578.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	14	181	2	2.06826	2.3893199999999997	2.71038	0.00114569	2.84674e-4	0.0311779	0.015495
chr16	71761767	71761867	6513987	0	-	0.32	(0.28,0.32]	chr16	631144	2	SS3_PROX	SS3_PROX:INTRON	AP1G1	ENSG00000166747.13	ENST00000299980.9:ENST00000569748.5:ENST00000393512.7:ENST00000565009.5:ENST00000565642.5:ENST00000568327.5:ENST00000566179.1:ENST00000450149.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	67	2	2.38504	2.3892550000000004	2.39347	0.0504457	0.00475871	0.156383	0.0636201
chr1	29166396	29166480	410287	0	-	0.5	(0.476,0.515]	chr1	49410	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SRSF4	ENSG00000116350.18	ENST00000373795.7:ENST00000691479.1:ENST00000634348.1:ENST00000466448.4:ENST00000605204.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	105	2	2.2344	2.389175	2.54395	0.00432475	8.361e-4	0.0579331	0.0263691
chr1	53831793	53831891	460546	0	-	0.326531	(0.32,0.35]	chr1	55439	33	INTRON	INTRON	NDC1	ENSG00000058804.12	ENST00000371429.4:ENST00000480952.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	74	2	1.61591	2.3891400000000003	3.16237	0.0277247	0.00550276	0.137011	0.0648867
chr17	63809843	63809927	6661337	0	+	0.321429	(0.32,0.35]	chr17	650009	2	SS5_PROX	SS5_PROX:INTRON	DDX42	ENSG00000198231.14	ENST00000578681.5:ENST00000583590.5:ENST00000389924.7:ENST00000359353.9:ENST00000577940.6:ENST00000584010.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	58	2	1.83315	2.389125	2.9451	0.0313348	0.011051	0.144381	0.0873897
chr1	36311187	36311287	73822	0	+	0.46	(0.44,0.476]	chr1	9484	12	INTRON	INTRON	SH3D21	ENSG00000214193.11	ENST00000453908.8:ENST00000505871.7:ENST00000480549.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	31	2	2.38219	2.3891150000000003	2.39604	0.045456	0.0404291	0.161534	0.149888
chr17	13578336	13578436	6727345	0	-	0.45	(0.44,0.476]	chr17	660143	224	INTRON	INTRON	HS3ST3A1	ENSG00000153976.3	ENST00000284110.2	protein_coding	protein_coding	protein_coding	protein_coding	2	31	2	2.38219	2.3891150000000003	2.39604	0.045456	0.0404291	0.161534	0.149888
chr17	81255739	81255838	6847702	0	-	0.464646	(0.44,0.476]	chr17	677886	21	INTRON	INTRON	SLC38A10	ENSG00000157637.13	ENST00000374759.8:ENST00000542075.5:ENST00000288439.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	31	2	2.38219	2.3891150000000003	2.39604	0.045456	0.0404291	0.161534	0.149888
chr19	51705628	51705726	7093955	0	+	0.459184	(0.44,0.476]	chr19	711104	1	INTRON	INTRON	SPACA6	ENSG00000182310.15	ENST00000573896.1	protein_coding	processed_transcript	protein_coding	processed_transcript	2	31	2	2.38219	2.3891150000000003	2.39604	0.045456	0.0404291	0.161534	0.149888
chr2	94923725	94923825	1176999	0	-	0.47	(0.44,0.476]	chr2	125578	141	INTRON	INTRON	ENSG00000259848	ENSG00000259848.9	ENST00000568768.5:ENST00000582835.1:ENST00000652556.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	2	31	2	2.38219	2.3891150000000003	2.39604	0.045456	0.0404291	0.161534	0.149888
chr3	50059746	50059846	1424170	0	+	0.46	(0.44,0.476]	chr3	150028	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	RBM6	ENSG00000004534.15	ENST00000442092.5:ENST00000443081.5:ENST00000419610.5:ENST00000441115.5:ENST00000422955.5:ENST00000454079.5:ENST00000266022.9:ENST00000434592.5:ENST00000478026.1:ENST00000438912.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	31	2	2.38219	2.3891150000000003	2.39604	0.045456	0.0404291	0.161534	0.149888
chr7	102411380	102411480	3371560	0	+	0.46	(0.44,0.476]	chr7	315478	35	INTRON	INTRON	PRKRIP1	ENSG00000128563.13	ENST00000469763.5:ENST00000482549.5:ENST00000496391.5:ENST00000482465.5:ENST00000462601.5:ENST00000397912.3:ENST00000468316.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	31	2	2.38219	2.3891150000000003	2.39604	0.045456	0.0404291	0.161534	0.149888
chr7	149282832	149282930	3446033	0	+	0.44898	(0.44,0.476]	chr7	321470	6	UTR3	UTR3:EXON_MRNA:INTRON	ZNF783	ENSG00000204946.10	ENST00000378052.5:ENST00000434415.6:ENST00000476295.5:ENST00000481519.5:ENST00000489518.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	31	2	2.38219	2.3891150000000003	2.39604	0.045456	0.0404291	0.161534	0.149888
chr6	31664921	31665003	3079100	0	-	0.52439	(0.515,0.57]	chr6	286899	2	UTR5	UTR5:EXON_MRNA	GPANK1	ENSG00000204438.11	ENST00000375896.9:ENST00000375906.5:ENST00000375900.8:ENST00000375895.6:ENST00000375893.6:ENST00000458083.5:ENST00000445768.5:ENST00000456540.1	protein_coding	protein_coding	protein_coding	protein_coding	3	36	2	1.79136	2.389065	2.98677	0.0638444	0.00632549	0.177811	0.0722266
chr19	54205775	54205875	7098882	0	+	0.46	(0.44,0.476]	chr19	711941	1	SS3_PROX	SS3_PROX:INTRON	RPS9	ENSG00000170889.14	ENST00000484121.5:ENST00000448962.5:ENST00000302907.9:ENST00000626547.2:ENST00000436445.5:ENST00000391752.5:ENST00000402367.5:ENST00000445961.5:ENST00000391751.7:ENST00000495002.5:ENST00000391753.6:ENST00000441429.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	15	217	2	1.92523	2.38904	2.85285	0.00400446	2.55443e-5	0.057767	0.0041665
chr9	112154299	112154399	4316571	0	-	0.45	(0.44,0.476]	chr9	396987	45	INTRON	INTRON	SUSD1	ENSG00000106868.17	ENST00000374270.8:ENST00000374263.7:ENST00000355396.7:ENST00000374264.6	protein_coding	protein_coding	protein_coding	protein_coding	7	72	2	1.41577	2.38904	3.36231	0.042743	0.00161678	0.148082	0.0369204
chr2	158465504	158465604	897225	0	+	0.26	[0,0.28]	chr2	99341	68	INTRON	INTRON	PKP4	ENSG00000144283.23	ENST00000389759.8:ENST00000426248.7:ENST00000389757.7:ENST00000457109.5:ENST00000452162.5:ENST00000411900.5:ENST00000421462.5:ENST00000462335.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	83	2	1.53147	2.38903	3.24659	0.0533898	0.00570201	0.179876	0.0656459
chr2	167936512	167936612	1259170	0	-	0.49	(0.476,0.515]	chr2	133349	4	SS3_PROX	SS3_PROX:INTRON	B3GALT1-AS1	ENSG00000235335.3	ENST00000430546.2:ENST00000657553.1:ENST00000670221.1:ENST00000436982.2:ENST00000654994.1	lncRNA	lncRNA	lncRNA	lncRNA	19	245	2	2.34185	2.38903	2.43621	2.331e-4	1.62801e-4	0.0135239	0.0116772
chr5	36872549	36872647	2601846	0	-	0.591837	(0.57,1]	chr5	247327	13	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	NIPBL-DT	ENSG00000285967.1	ENST00000647750.1:ENST00000649921.1:ENST00000647824.1	lncRNA	lncRNA	lncRNA	lncRNA	8	40	2	1.35469	2.38896	3.42323	0.039905	8.58388e-4	0.161534	0.0267428
chr7	99390207	99390305	3361669	0	+	0.510204	(0.476,0.515]	chr7	313898	3	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	ARPC1B	ENSG00000130429.16	ENST00000443222.6:ENST00000414376.6:ENST00000645391.1:ENST00000695607.1:ENST00000455009.6:ENST00000484375.5:ENST00000695608.1:ENST00000646101.2:ENST00000427217.6:ENST00000451682.5:ENST00000431816.6:ENST00000458033.6:ENST00000417330.6:ENST00000695609.1:ENST00000432343.1:ENST00000445924.5:ENST00000468337.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	103	2	2.08673	2.388885	2.69104	0.00486567	9.94264e-4	0.0607461	0.0290397
chr5	54088555	54088654	2618692	0	-	0.444444	(0.44,0.476]	chr5	248841	126	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	57	2	1.75023	2.38887	3.02751	0.0240995	0.00715968	0.129929	0.0723634
chr10	21585094	21585194	4404925	0	+	0.55	(0.515,0.57]	chr10	406453	127	INTRON	INTRON	MLLT10	ENSG00000078403.17	ENST00000651097.1:ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000650772.1:ENST00000651298.1:ENST00000495130.5:ENST00000377059.7:ENST00000476557.5:ENST00000462999.5:ENST00000430455.2:ENST00000479634.1:ENST00000480415.6:ENST00000652258.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	66	2	2.23927	2.38886	2.53845	0.00632226	0.00328621	0.0687526	0.0527031
chr16	16606679	16606779	6311929	0	+	0.43	(0.408,0.44]	chr16	604098	1067	INTRON	INTRON	ENSG00000260126	ENSG00000260126.2	ENST00000567465.2	lncRNA	lncRNA	lncRNA	lncRNA	7	93	2	2.29426	2.38876	2.48326	0.00324772	0.00277178	0.0508595	0.04874
chr6	85627201	85627301	3151289	0	-	0.47	(0.44,0.476]	chr6	293889	27	INTRON	INTRON	ENSG00000271793:SYNCRIP	ENSG00000271793.2:ENSG00000135316.19	ENST00000682083.1:ENST00000683074.1:ENST00000681965.1:ENST00000682504.1:ENST00000682106.1:ENST00000683364.1:ENST00000683436.1:ENST00000684220.1:ENST00000683909.1:ENST00000684462.1:ENST00000616122.5:ENST00000678528.1:ENST00000676637.1:ENST00000677771.1:ENST00000355238.11:ENST00000678878.1:ENST00000677481.1:ENST00000677646.1:ENST00000676630.1:ENST00000678618.1:ENST00000676542.1:ENST00000677059.1:ENST00000444272.2:ENST00000678899.1:ENST00000369622.8:ENST00000678355.1:ENST00000676688.1:ENST00000677514.1:ENST00000678816.1:ENST00000678930.1:ENST00000678589.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	67	2	2.22103	2.38876	2.55649	0.00776319	0.00670547	0.0787356	0.0707084
chr16	8033723	8033823	6440846	0	-	0.33	(0.32,0.35]	chr16	620351	261	INTRON	INTRON	ENSG00000260289	ENSG00000260289.2	ENST00000670665.1:ENST00000654046.1:ENST00000567103.2	lncRNA	lncRNA	lncRNA	lncRNA	7	87	2	1.54419	2.38875	3.23331	0.0315293	0.00315414	0.13151	0.0515261
chr10	73049961	73050060	4647370	0	-	0.494949	(0.476,0.515]	chr10	427518	25	INTRON	INTRON	P4HA1	ENSG00000122884.13	ENST00000394890.7:ENST00000307116.6:ENST00000373008.6:ENST00000440381.5:ENST00000263556.3	protein_coding	protein_coding	protein_coding	protein_coding	8	105	2	2.20678	2.38868	2.57058	0.00484957	7.29232e-4	0.0605773	0.0246094
chr9	37155939	37156039	4118013	0	+	0.51	(0.476,0.515]	chr9	375382	81	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000322831.6:ENST00000461038.5:ENST00000488607.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	105	2	2.20678	2.38868	2.57058	0.00484957	7.29232e-4	0.0605773	0.0246094
chr1	28508127	28508160	57190	0	+	0.30303	(0.28,0.32]	chr1	7381	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	RCC1:SNHG3	ENSG00000180198.17:ENSG00000242125.3	ENST00000398958.6:ENST00000649185.1:ENST00000413987.1:ENST00000427469.5:ENST00000683442.1:ENST00000447507.1:ENST00000434290.6:ENST00000373833.10:ENST00000437681.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	51	779	2	2.23981	2.388645	2.53748	1.05061e-4	6.38115e-5	0.00920724	0.00660944
chr17	35614181	35614281	6599810	0	+	0.39	(0.378,0.408]	chr17	642258	54	INTRON	INTRON	AP2B1	ENSG00000006125.18	ENST00000616784.4:ENST00000621914.4:ENST00000620039.4:ENST00000616681.4:ENST00000621668.4:ENST00000610402.5:ENST00000612035.4:ENST00000614600.4:ENST00000612116.5:ENST00000618940.4:ENST00000591561.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	60	2	1.45712	2.38864	3.32016	0.0597975	0.00268328	0.189982	0.0464781
chr7	10572472	10572572	3482504	0	-	0.39	(0.378,0.408]	chr7	325772	105	INTRON	INTRON	MGC4859	ENSG00000283117.1	ENST00000634803.1	lncRNA	lncRNA	lncRNA	lncRNA	5	60	2	1.45712	2.38864	3.32016	0.0597975	0.00268328	0.189982	0.0464781
chr1	162563038	162563137	238332	0	+	0.292929	(0.28,0.32]	chr1	28696	6	INTRON	INTRON	UAP1	ENSG00000117143.14	ENST00000367925.6:ENST00000367926.9	protein_coding	protein_coding	protein_coding	protein_coding	3	53	2	1.91611	2.38862	2.86113	0.0539102	0.0122675	0.164153	0.0969406
chr6	161063016	161063115	3025208	0	+	0.292929	(0.28,0.32]	chr6	282325	127	INTRON	INTRON	MAP3K4	ENSG00000085511.20	ENST00000366919.6:ENST00000392142.9:ENST00000542952.5:ENST00000366920.6:ENST00000348824.11:ENST00000544041.5:ENST00000490904.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	53	2	1.91611	2.38862	2.86113	0.0539102	0.0122675	0.164153	0.0969406
chr1	227308204	227308304	651618	0	-	0.51	(0.476,0.515]	chr1	77110	431	INTRON	INTRON	CDC42BPA	ENSG00000143776.20	ENST00000366766.8:ENST00000366769.7:ENST00000334218.9:ENST00000366767.7:ENST00000366764.8:ENST00000478573.6:ENST00000682551.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	67	2	2.09697	2.3886	2.68023	0.0136924	0.00353671	0.0949306	0.0546236
chr21	46203940	46204039	7470614	0	-	0.333333	(0.32,0.35]	chr21	761464	73	INTRON	INTRON	LSS	ENSG00000160285.15	ENST00000356396.8:ENST00000397728.8:ENST00000457828.6:ENST00000522411.5	protein_coding	protein_coding	protein_coding	protein_coding	8	125	2	2.02647	2.38854	2.75061	0.0116933	3.45163e-4	0.0892647	0.0165233
chr1	86917098	86917198	153617	0	+	0.44	(0.408,0.44]	chr1	16952	9	INTRON	INTRON	HS2ST1	ENSG00000153936.18	ENST00000370550.10:ENST00000370551.8:ENST00000687893.1:ENST00000693745.1:ENST00000689904.1:ENST00000690674.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	43	2	2.27698	2.388405	2.49983	0.0583528	0.00713527	0.167723	0.0756118
chr22	23205647	23205747	7483458	0	+	0.31	(0.28,0.32]	chr22	763541	59	INTRON	INTRON	BCR	ENSG00000186716.21	ENST00000479188.5:ENST00000359540.7:ENST00000305877.13:ENST00000463770.5:ENST00000487679.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	177	2	1.61011	2.388375	3.16664	0.0124141	2.46614e-4	0.0973643	0.0145064
chr3	182859260	182859359	1578544	0	+	0.393939	(0.378,0.408]	chr3	162760	2	CDS	CDS:EXON_MRNA	ATP11B	ENSG00000058063.16	ENST00000323116.10:ENST00000498086.5	protein_coding	protein_coding	protein_coding	protein_coding	6	69	2	1.98727	2.3883650000000003	2.78946	0.0158859	0.00639052	0.101453	0.0726555
chr1	100098179	100098278	515506	0	-	0.272727	[0,0.28]	chr1	60434	96	INTRON	INTRON	SASS6	ENSG00000156876.10	ENST00000462159.1:ENST00000287482.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	44	2	2.27119	2.388345	2.5055	0.070351	0.0359431	0.184298	0.152322
chr4	74161165	74161264	1972334	0	+	0.232323	[0,0.28]	chr4	197723	5	EXON_LNCRNA	EXON_LNCRNA:INTRON	MTHFD2L	ENSG00000163738.19	ENST00000429519.5:ENST00000429335.5:ENST00000433372.5:ENST00000423607.6:ENST00000395759.6:ENST00000325278.7:ENST00000359107.10:ENST00000461101.1:ENST00000484725.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	44	2	2.27119	2.388345	2.5055	0.070351	0.0359431	0.184298	0.152322
chr5	36930344	36930444	2338966	0	+	0.27	[0,0.28]	chr5	225949	440	INTRON	INTRON	NIPBL	ENSG00000164190.19	ENST00000282516.13:ENST00000448238.2:ENST00000652901.1	protein_coding	protein_coding	protein_coding	protein_coding	2	44	2	2.27119	2.388345	2.5055	0.070351	0.0359431	0.184298	0.152322
chr5	173958216	173958315	2550459	0	+	0.272727	[0,0.28]	chr5	243486	22	UTR3	UTR3:EXON_MRNA	CPEB4	ENSG00000113742.14	ENST00000265085.10:ENST00000334035.9	protein_coding	protein_coding	protein_coding	protein_coding	2	44	2	2.27119	2.388345	2.5055	0.070351	0.0359431	0.184298	0.152322
chr3	72429803	72429903	1745753	0	-	0.46	(0.44,0.476]	chr3	177368	493	INTRON	INTRON	RYBP	ENSG00000163602.12	ENST00000477973.5	protein_coding	protein_coding	protein_coding	protein_coding	7	93	2	2.2193	2.38832	2.55734	0.00896114	7.72402e-4	0.0800073	0.0255867
chr22	20099686	20099786	7478433	0	+	0.39	(0.378,0.408]	chr22	762741	45	INTRON	INTRON	DGCR8	ENSG00000128191.16	ENST00000383024.6:ENST00000351989.8:ENST00000495826.5:ENST00000407755.1:ENST00000498171.5:ENST00000491892.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	59	2	1.94681	2.38824	2.82967	0.0457723	0.00189968	0.149888	0.0402736
chr7	155761813	155761912	3453086	0	+	0.363636	(0.35,0.378]	chr7	322730	148	INTRON	INTRON	RBM33	ENSG00000184863.11	ENST00000401878.8:ENST00000392761.3:ENST00000438356.1:ENST00000341148.7	protein_coding	protein_coding	protein_coding	protein_coding	7	101	2	2.33792	2.388205	2.43849	0.00430822	0.0024225	0.0578073	0.0454587
chr2	111243153	111243252	1209268	0	-	0.30303	(0.28,0.32]	chr2	128823	28	INTRON	INTRON	MIR4435-2HG	ENSG00000172965.17	ENST00000645030.2:ENST00000642191.1:ENST00000673798.1:ENST00000645051.2:ENST00000673649.1:ENST00000673962.1:ENST00000674132.1:ENST00000669658.1:ENST00000669917.1:ENST00000661559.1:ENST00000653687.1:ENST00000667670.1:ENST00000609220.2:ENST00000656760.1:ENST00000609902.6:ENST00000666683.1:ENST00000674070.1:ENST00000662335.1:ENST00000664422.1:ENST00000673775.1:ENST00000662889.1:ENST00000665096.1:ENST00000674092.1:ENST00000673958.1:ENST00000673770.1:ENST00000673961.1:ENST00000658936.1:ENST00000662635.1:ENST00000666204.1:ENST00000659458.1:ENST00000664443.1:ENST00000670295.1:ENST00000661655.1:ENST00000666390.1:ENST00000659079.1:ENST00000660442.1:ENST00000664009.1:ENST00000439362.6:ENST00000654473.1:ENST00000664999.1:ENST00000673728.1:ENST00000659791.1:ENST00000666144.1:ENST00000659933.1:ENST00000670715.1:ENST00000656303.1:ENST00000666367.1:ENST00000666652.1:ENST00000669050.1:ENST00000667218.1:ENST00000656067.1:ENST00000653568.1:ENST00000643013.1:ENST00000673866.1:ENST00000673700.1:ENST00000443467.6:ENST00000451884.6:ENST00000669875.1:ENST00000673653.1:ENST00000673988.1:ENST00000661945.1:ENST00000669515.1:ENST00000431385.6:ENST00000655573.1	lncRNA	lncRNA	lncRNA	lncRNA	4	63	2	1.85772	2.388115	2.91851	0.0300199	0.0130672	0.142135	0.093385
chr7	74190164	74190246	3332387	0	+	0.378049	(0.378,0.408]	chr7	310049	4	EXON_MRNA	EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	EIF4H	ENSG00000106682.16	ENST00000678438.1:ENST00000489484.5:ENST00000677998.1:ENST00000495187.2:ENST00000265753.13:ENST00000353999.6:ENST00000677570.1:ENST00000677681.1:ENST00000678815.1:ENST00000679266.1:ENST00000679287.1:ENST00000678341.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	52	2	2.04622	2.3880749999999997	2.72993	0.0188736	0.0149927	0.108861	0.107704
chr12	50447699	50447799	5136814	0	+	0.43	(0.408,0.44]	chr12	484418	57	INTRON	INTRON	LARP4	ENSG00000161813.23	ENST00000293618.12:ENST00000429001.7:ENST00000398473.7:ENST00000522085.5:ENST00000518444.5:ENST00000518561.5:ENST00000347328.9:ENST00000520064.2:ENST00000521120.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	93	2	2.03896	2.3880299999999997	2.7371	0.00968464	7.83328e-4	0.0828348	0.0257505
chr3	42042011	42042111	1403942	0	+	0.5	(0.476,0.515]	chr3	147497	275	INTRON	INTRON	TRAK1	ENSG00000182606.17	ENST00000487159.5:ENST00000672026.1:ENST00000673621.2	protein_coding	protein_coding	protein_coding	protein_coding	4	56	2	2.32001	2.387995	2.45598	0.0136217	0.00945755	0.101682	0.0817766
chr20	62128791	62128890	7297409	0	+	0.333333	(0.32,0.35]	chr20	742208	7	INTRON	INTRON	LSM14B	ENSG00000149657.20	ENST00000279068.11:ENST00000400318.6:ENST00000279069.11:ENST00000361670.3	protein_coding	protein_coding	protein_coding	protein_coding	5	79	2	2.06533	2.38793	2.71053	0.0174225	0.00346747	0.10453	0.0539802
chr19	28498245	28498345	7166077	0	-	0.43	(0.408,0.44]	chr19	724189	300	INTRON	INTRON	ENSG00000283403:ENSG00000267243	ENSG00000283403.1:ENSG00000267243.6	ENST00000592347.5:ENST00000593065.5	lncRNA	lncRNA	lncRNA	lncRNA	12	137	2	1.7844	2.387925	2.99145	0.00469422	3.14287e-4	0.0631419	0.0163194
chrX	9512624	9512724	7619130	0	+	0.53	(0.515,0.57]	chrX	779944	104	INTRON	INTRON	TBL1X	ENSG00000101849.18	ENST00000407597.7:ENST00000380961.5:ENST00000424279.6:ENST00000645353.2:ENST00000422314.5	protein_coding	protein_coding	protein_coding	protein_coding	3	37	2	2.21273	2.3878950000000003	2.56306	0.0247751	0.0196151	0.131869	0.109486
chr1	27329137	27329236	53849	0	+	0.414141	(0.408,0.44]	chr1	6886	35	INTRON	INTRON	TMEM222	ENSG00000186501.15	ENST00000611517.4:ENST00000374076.9:ENST00000464720.5:ENST00000608611.5:ENST00000486082.5:ENST00000466759.5:ENST00000464813.5:ENST00000478104.5:ENST00000498220.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	42	2	1.81572	2.387895	2.96007	0.0626779	0.00753901	0.175915	0.0773151
chr16	20736684	20736781	6459025	0	-	0.42268	(0.408,0.44]	chr16	623030	32	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	THUMPD1	ENSG00000066654.14	ENST00000636554.1:ENST00000381337.6:ENST00000396083.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	42	2	1.81572	2.387895	2.96007	0.0626779	0.00753901	0.175915	0.0773151
chr17	78811082	78811180	6846087	0	-	0.428571	(0.408,0.44]	chr17	677398	31	INTRON	INTRON	USP36	ENSG00000055483.20	ENST00000589225.5:ENST00000592231.6:ENST00000449938.7:ENST00000542802.7:ENST00000693020.1:ENST00000312010.10:ENST00000588086.6:ENST00000588467.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	42	2	1.81572	2.387895	2.96007	0.0626779	0.00753901	0.175915	0.0773151
chr18	12480969	12481069	6947509	0	-	0.44	(0.408,0.44]	chr18	687331	7	INTRON	INTRON	SPIRE1	ENSG00000134278.16	ENST00000409402.9:ENST00000410092.7:ENST00000309836.9:ENST00000440472.6:ENST00000453447.6:ENST00000464481.5:ENST00000592156.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	42	2	1.81572	2.387895	2.96007	0.0626779	0.00753901	0.175915	0.0773151
chr2	113478439	113478538	853888	0	+	0.434343	(0.408,0.44]	chr2	95830	70	INTRON	INTRON	CBWD2	ENSG00000136682.16	ENST00000259199.9:ENST00000416503.6:ENST00000358604.7:ENST00000456188.5:ENST00000479583.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	42	2	1.81572	2.387895	2.96007	0.0626779	0.00753901	0.175915	0.0773151
chr22	19417149	19417249	7554279	0	-	0.42	(0.408,0.44]	chr22	772317	60	INTRON	INTRON	HIRA:C22orf39	ENSG00000100084.14:ENSG00000242259.9	ENST00000263208.5:ENST00000340170.8:ENST00000509549.5:ENST00000464189.5:ENST00000452818.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	42	2	1.81572	2.387895	2.96007	0.0626779	0.00753901	0.175915	0.0773151
chr6	57100302	57100402	2878160	0	+	0.44	(0.408,0.44]	chr6	273244	3	SS3_PROX	SS3_PROX:INTRON	ZNF451	ENSG00000112200.17	ENST00000515290.5:ENST00000510483.5:ENST00000357489.7:ENST00000370708.8:ENST00000370702.5:ENST00000444273.6:ENST00000370711.9:ENST00000508603.5:ENST00000370706.9:ENST00000491832.6:ENST00000502749.1:ENST00000504603.1:ENST00000509071.5:ENST00000510989.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	42	2	1.81572	2.387895	2.96007	0.0626779	0.00753901	0.175915	0.0773151
chr1	109373886	109373985	520779	0	-	0.474747	(0.44,0.476]	chr1	61195	39	INTRON	INTRON	SORT1	ENSG00000134243.12	ENST00000538502.5:ENST00000256637.8:ENST00000493736.5:ENST00000482236.5:ENST00000633956.1:ENST00000471996.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	56	2	2.08277	2.38787	2.69297	0.0309998	0.00333494	0.13151	0.0528877
chr10	96566718	96566817	4674227	0	-	0.464646	(0.44,0.476]	chr10	430721	9	INTRON	INTRON	TM9SF3	ENSG00000077147.16	ENST00000371142.9:ENST00000649367.1:ENST00000443638.1:ENST00000464654.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	56	2	2.08277	2.38787	2.69297	0.0309998	0.00333494	0.13151	0.0528877
chr8	37869524	37869623	3935639	0	-	0.464646	(0.44,0.476]	chr8	360553	61	INTRON	INTRON	RAB11FIP1	ENSG00000156675.16	ENST00000330843.9:ENST00000287263.8:ENST00000522727.5:ENST00000523182.5:ENST00000522774.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	56	2	2.08277	2.38787	2.69297	0.0309998	0.00333494	0.13151	0.0528877
chr12	103944527	103944627	5208488	0	+	0.49	(0.476,0.515]	chr12	492965	4	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	HSP90B1	ENSG00000166598.16	ENST00000550595.2:ENST00000681861.1:ENST00000680899.1:ENST00000680391.1:ENST00000680653.1:ENST00000679779.1:ENST00000680281.1:ENST00000681949.1:ENST00000680989.1:ENST00000614327.2:ENST00000680762.1:ENST00000680663.1:ENST00000681172.1:ENST00000681941.1:ENST00000681910.1:ENST00000681704.1:ENST00000299767.10:ENST00000681174.1:ENST00000680370.1:ENST00000679538.1:ENST00000681698.1:ENST00000548462.5:ENST00000680316.1:ENST00000679861.1:ENST00000681245.1:ENST00000680478.1:ENST00000552051.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	112	2	2.24144	2.387815	2.53419	0.00251905	0.00122866	0.0446195	0.0325799
chr8	140988635	140988735	4079952	0	-	0.59	(0.57,1]	chr8	370590	41	INTRON	INTRON	PTK2	ENSG00000169398.20	ENST00000696786.1:ENST00000522684.5:ENST00000395218.3:ENST00000521059.5:ENST00000519993.5:ENST00000340930.7:ENST00000524357.5:ENST00000521791.5:ENST00000523067.5:ENST00000520828.5:ENST00000519881.5:ENST00000520892.5:ENST00000517453.5:ENST00000520045.5:ENST00000521332.5:ENST00000524040.5:ENST00000523679.1:ENST00000524257.5:ENST00000523797.1:ENST00000519635.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	10	66	2	2.08468	2.387805	2.69093	0.00216781	2.65452e-4	0.0417893	0.0144243
chr4	99007066	99007166	2002823	0	+	0.53	(0.515,0.57]	chr4	199803	8	INTRON	INTRON	METAP1	ENSG00000164024.12	ENST00000510209.5:ENST00000296411.11:ENST00000507537.5:ENST00000506238.5:ENST00000503247.5:ENST00000510107.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	49	2	1.68552	2.3877699999999997	3.09002	0.0292028	0.00491099	0.141637	0.0609494
chr1	203806812	203806912	296792	0	+	0.25	[0,0.28]	chr1	34134	34	INTRON	INTRON	ZC3H11A:ZBED6	ENSG00000058673.17:ENSG00000257315.3	ENST00000367210.3:ENST00000453771.5:ENST00000432282.5:ENST00000638800.1:ENST00000367214.5:ENST00000639812.1:ENST00000367212.7:ENST00000332127.8:ENST00000550078.2:ENST00000495527.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	93	2	1.76263	2.38775	3.01287	0.0191804	0.0115634	0.119774	0.0889104
chr20	47315272	47315371	7349096	0	-	0.40404	(0.378,0.408]	chr20	749342	47	INTRON	INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000468376.2:ENST00000435836.5:ENST00000446894.5:ENST00000441977.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	52	2	1.72045	2.387735	3.05502	0.0424671	0.00689519	0.161763	0.0717484
chr5	139598362	139598462	2500874	0	+	0.38	(0.378,0.408]	chr5	239026	356	INTRON	INTRON	UBE2D2	ENSG00000131508.16	ENST00000511725.5:ENST00000505007.5:ENST00000398733.8:ENST00000510470.1:ENST00000398734.8:ENST00000505548.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	52	2	1.72045	2.387735	3.05502	0.0424671	0.00689519	0.161763	0.0717484
chr22	29273437	29273537	7496113	0	+	0.37	(0.35,0.378]	chr22	764804	3	SS3_PROX	SS3_PROX:INTRON	EWSR1	ENSG00000182944.18	ENST00000629659.2:ENST00000332050.10:ENST00000444626.5:ENST00000447973.5:ENST00000436425.5:ENST00000397938.7:ENST00000406548.5:ENST00000485037.5:ENST00000437155.6:ENST00000415761.5:ENST00000331029.11:ENST00000483415.5:ENST00000414183.6:ENST00000333395.10:ENST00000332035.10:ENST00000455726.5:ENST00000493426.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	126	2	2.32472	2.38764	2.45056	0.0066582	4.41953e-4	0.0703994	0.019019
chr17	39390974	39391073	6766546	0	-	0.464646	(0.44,0.476]	chr17	665497	474	INTRON	INTRON	FBXL20	ENSG00000108306.13	ENST00000264658.11:ENST00000583610.5:ENST00000394294.7:ENST00000577399.5:ENST00000647139.1	protein_coding	protein_coding	protein_coding	protein_coding	4	56	2	2.38519	2.38761	2.39003	0.012193	0.0106488	0.0915714	0.0910127
chr11	11905748	11905848	4736202	0	+	0.3	(0.28,0.32]	chr11	438648	2	SS5_PROX	SS5_PROX:INTRON	USP47	ENSG00000170242.19	ENST00000339865.9:ENST00000527733.7:ENST00000399455.2	protein_coding	protein_coding	protein_coding	protein_coding	3	54	2	2.2609	2.38758	2.51426	0.0671429	0.00781326	0.183051	0.0788246
chr3	47155134	47155234	1681516	0	-	0.29	(0.28,0.32]	chr3	171624	281	INTRON	INTRON	SETD2	ENSG00000181555.22	ENST00000691544.1:ENST00000638947.2:ENST00000409792.4:ENST00000412450.1	protein_coding	protein_coding	protein_coding	protein_coding	3	54	2	2.2609	2.38758	2.51426	0.0671429	0.00781326	0.183051	0.0788246
chr16	85508286	85508386	6414913	0	+	0.56	(0.515,0.57]	chr16	615465	1490	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	5	58	2	2.20213	2.387555	2.57298	0.00853365	0.00506495	0.0780043	0.0646039
chr6	4061707	4061807	2790119	0	+	0.28	[0,0.28]	chr6	263563	12	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PRPF4B	ENSG00000112739.17	ENST00000480058.5:ENST00000337659.11:ENST00000481109.5:ENST00000463634.6:ENST00000494674.1:ENST00000490653.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	211	2	2.04923	2.387555	2.72588	0.00722885	3.17347e-4	0.0729826	0.0159645
chrX	54564893	54564993	7664962	0	+	0.52	(0.515,0.57]	chrX	784797	44	UTR3	UTR3:EXON_MRNA:INTRON	GNL3L	ENSG00000130119.17	ENST00000674498.1:ENST00000360845.3	protein_coding	protein_coding	protein_coding	protein_coding	6	67	2	2.09379	2.387555	2.68132	0.00680216	0.00324198	0.071184	0.0524329
chr14	88577484	88577584	5802724	0	+	0.27	[0,0.28]	chr14	549710	1	SS3_PROX	SS3_PROX:INTRON	ZC3H14	ENSG00000100722.20	ENST00000302216.12:ENST00000649731.1:ENST00000556945.5:ENST00000557607.5:ENST00000251038.10:ENST00000555755.5:ENST00000393514.9:ENST00000336693.8:ENST00000556000.5:ENST00000557605.1:ENST00000556110.5:ENST00000557047.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	73	2	2.13176	2.387425	2.64309	0.0308646	0.0135097	0.13151	0.101363
chr15	63747403	63747493	6200023	0	-	0.411111	(0.408,0.44]	chr15	591377	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HERC1	ENSG00000103657.14	ENST00000443617.7:ENST00000561400.1:ENST00000560519.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	23	288	2	2.35737	2.387425	2.41748	2.58163e-4	6.48333e-5	0.0148796	0.00668005
chr6	110813544	110813641	3190439	0	-	0.340206	(0.32,0.35]	chr6	297128	5	EXON_LNCRNA	EXON_LNCRNA:INTRON	CDK19	ENSG00000155111.15	ENST00000323817.7:ENST00000368911.8:ENST00000413605.6:ENST00000457688.5:ENST00000460913.1:ENST00000497709.1:ENST00000468997.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	111	2	2.06533	2.387275	2.70922	0.0174225	4.28954e-4	0.10453	0.0185474
chr2	68221925	68222025	1146218	0	-	0.32	(0.28,0.32]	chr2	122396	44	INTRON	INTRON	PPP3R1	ENSG00000221823.11	ENST00000234310.8:ENST00000409752.5:ENST00000409377.1	protein_coding	protein_coding	protein_coding	protein_coding	2	39	2	2.38101	2.3872400000000003	2.39347	0.0504457	0.0456017	0.164236	0.156383
chr7	105127759	105127857	3601269	0	-	0.295918	(0.28,0.32]	chr7	336070	3	INTRON	INTRON	SRPK2	ENSG00000135250.17	ENST00000465072.5:ENST00000393651.8:ENST00000357311.7:ENST00000466917.1:ENST00000485455.1:ENST00000477925.5:ENST00000489828.5:ENST00000474770.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	39	2	2.38101	2.3872400000000003	2.39347	0.0504457	0.0456017	0.164236	0.156383
chr11	120488350	120488449	4877775	0	+	0.383838	(0.378,0.408]	chr11	456003	34	UTR3	UTR3:EXON_MRNA	ARHGEF12	ENSG00000196914.9	ENST00000397843.7:ENST00000532993.5	protein_coding	protein_coding	protein_coding	protein_coding	2	32	2	2.2259	2.387195	2.54849	0.0662381	0.0273196	0.181924	0.136494
chr2	152703489	152703589	1246384	0	-	0.4	(0.378,0.408]	chr2	132360	85	INTRON	INTRON	PRPF40A	ENSG00000196504.20	ENST00000410080.8:ENST00000545856.8:ENST00000696382.1:ENST00000696381.1:ENST00000354363.11:ENST00000493468.7:ENST00000448428.2:ENST00000489741.1:ENST00000450303.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	32	2	2.2259	2.387195	2.54849	0.0662381	0.0273196	0.181924	0.136494
chr2	167849218	167849318	1258292	0	-	0.37	(0.35,0.378]	chr2	133322	336	INTRON	INTRON	B3GALT1-AS1	ENSG00000235335.3	ENST00000430546.2:ENST00000657553.1:ENST00000670221.1:ENST00000436982.2	lncRNA	lncRNA	lncRNA	lncRNA	3	45	2	2.17079	2.3871000000000002	2.60341	0.0275785	0.0225978	0.124921	0.123904
chr16	81517888	81517988	6405730	0	+	0.42	(0.408,0.44]	chr16	615031	220	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6	protein_coding	protein_coding	protein_coding	protein_coding	3	42	2	2.33431	2.387095	2.43988	0.0398236	0.0129219	0.143072	0.0990564
chr4	174317481	174317579	2082931	0	+	0.244898	[0,0.28]	chr4	205864	2	UTR3	UTR3:EXON_MRNA:INTRON	CEP44	ENSG00000164118.13	ENST00000457424.6:ENST00000396791.7:ENST00000503780.6:ENST00000426172.3:ENST00000296519.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	169	2	2.34112	2.3870649999999998	2.43301	0.0089545	8.39815e-4	0.0800073	0.0263691
chr12	76078036	76078136	5370159	0	-	0.38	(0.378,0.408]	chr12	512329	34	INTRON	INTRON	NAP1L1	ENSG00000187109.15	ENST00000618691.5:ENST00000393263.7:ENST00000431879.7:ENST00000547773.5:ENST00000544816.5:ENST00000542344.5:ENST00000535020.6:ENST00000549596.5:ENST00000552342.5:ENST00000548044.5:ENST00000550934.5:ENST00000551992.5:ENST00000548273.5:ENST00000551600.5:ENST00000547704.5:ENST00000549988.5:ENST00000547479.5:ENST00000549479.1:ENST00000551500.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	107	2	1.82032	2.387055	2.95379	0.01477	2.62263e-4	0.0984422	0.0143317
chr3	160421972	160422067	1544839	0	+	0.368421	(0.35,0.378]	chr3	160739	7	INTRON	INTRON	SMC4	ENSG00000113810.16	ENST00000357388.8:ENST00000469762.5:ENST00000469858.5:ENST00000462787.5:ENST00000344722.5:ENST00000462668.5:ENST00000497203.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	45	2	2.10859	2.38703	2.66547	0.0272722	0.0233639	0.136494	0.118323
chr6	24705547	24705645	3070585	0	-	0.326531	(0.32,0.35]	chr6	285341	8	UTR3	UTR3:EXON_MRNA	C6orf62	ENSG00000112308.13	ENST00000378119.9	protein_coding	protein_coding	protein_coding	protein_coding	4	69	2	2.07985	2.38703	2.69421	0.0303092	0.00484681	0.143025	0.0605691
chr22	49652725	49652825	7602615	0	-	0.3	(0.28,0.32]	chr22	778594	253	INTRON	INTRON	MIR3667HG	ENSG00000188511.13	ENST00000414287.5:ENST00000416411.1:ENST00000689875.1:ENST00000400023.5:ENST00000405854.5	lncRNA	lncRNA	lncRNA	lncRNA	11	166	2	1.58684	2.386945	3.18705	0.0207443	1.0889e-4	0.111219	0.00883972
chr6	34882601	34882686	3086281	0	-	0.329412	(0.32,0.35]	chr6	288716	3	SS5_PROX	SS5_PROX:INTRON	TAF11	ENSG00000064995.19	ENST00000361288.9:ENST00000650109.1:ENST00000693593.1:ENST00000420584.3:ENST00000689560.1:ENST00000685682.1:ENST00000691871.1:ENST00000686190.1:ENST00000687970.1:ENST00000688059.1:ENST00000690161.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	49	2	1.99307	2.3869	2.78073	0.04271	0.01481	0.148082	0.106702
chr22	16610263	16610362	7473443	0	+	0.626263	(0.57,1]	chr22	761972	77	INTRON	INTRON	TPTEP1:ENSG00000283633	ENSG00000100181.22:ENSG00000283633.1	ENST00000558085.6:ENST00000400593.6:ENST00000592918.5:ENST00000592107.5:ENST00000426585.5:ENST00000591299.1	lncRNA	lncRNA	lncRNA:transcribed_unprocessed_pseudogene	lncRNA:processed_transcript	8	55	2	2.2837	2.3868549999999997	2.49001	0.00256797	8.49418e-4	0.0466761	0.0267232
chr7	74759642	74759737	3336321	0	+	0.378947	(0.378,0.408]	chr7	310547	2	UTR3	UTR3:EXON_MRNA	GTF2I	ENSG00000263001.8	ENST00000650807.1:ENST00000690345.1:ENST00000573035.6:ENST00000614986.4:ENST00000620879.4:ENST00000621734.4:ENST00000621040.4:ENST00000614048.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	118	2	2.34772	2.38683	2.42594	0.00428028	7.16572e-4	0.0574861	0.0244192
chr16	47603431	47603531	6344739	0	+	0.29	(0.28,0.32]	chr16	608939	55	INTRON	INTRON	PHKB	ENSG00000102893.17	ENST00000566044.5:ENST00000299167.12:ENST00000696809.1:ENST00000323584.10:ENST00000568439.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	71	2	2.25939	2.386825	2.51426	0.021772	0.00781326	0.11491	0.0788246
chr17	8467792	8467885	6555701	0	+	0.623656	(0.57,1]	chr17	637369	7	UTR3	UTR3:EXON_MRNA:INTRON	NDEL1	ENSG00000166579.16	ENST00000334527.12:ENST00000380025.8:ENST00000581679.1:ENST00000583683.1:ENST00000578172.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	31	2	1.87901	2.38682	2.89463	0.0152867	0.00788262	0.108569	0.076155
chr1	47306889	47306988	446039	0	-	0.575758	(0.57,1]	chr1	54067	15	INTRON	INTRON	STIL	ENSG00000123473.17	ENST00000360380.7:ENST00000371877.8:ENST00000337817.10:ENST00000682977.1:ENST00000396221.6:ENST00000447475.7:ENST00000436811.2	protein_coding	protein_coding	protein_coding	protein_coding	4	27	2	1.98953	2.38681	2.78409	0.0182848	0.0116033	0.115629	0.0889104
chr17	6926283	6926383	6717467	0	-	0.35	(0.32,0.35]	chr17	658647	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	ALOX12-AS1	ENSG00000215067.11	ENST00000653385.1:ENST00000659418.1:ENST00000572385.5:ENST00000570562.5:ENST00000575889.5	lncRNA	lncRNA	lncRNA	lncRNA	4	58	2	1.97654	2.386805	2.79707	0.0199113	0.0170923	0.120668	0.104099
chr10	32904982	32905080	4592148	0	-	0.265306	[0,0.28]	chr10	423410	30	INTRON	INTRON	ITGB1	ENSG00000150093.20	ENST00000609742.3:ENST00000678989.1:ENST00000677363.1:ENST00000302278.8:ENST00000396033.6:ENST00000423113.5:ENST00000417122.7:ENST00000676895.1:ENST00000678120.1:ENST00000676623.1:ENST00000678952.1:ENST00000677999.1:ENST00000679187.1:ENST00000678479.1:ENST00000676964.1:ENST00000488494.6:ENST00000488427.2:ENST00000678591.1:ENST00000678943.1:ENST00000437302.6:ENST00000678701.1:ENST00000678766.1:ENST00000676659.1:ENST00000677310.1:ENST00000494395.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	60	2	2.33097	2.386695	2.44242	0.0491024	0.0158969	0.155269	0.109464
chr2	113906444	113906542	854408	0	+	0.306122	(0.28,0.32]	chr2	95897	13	INTRON	INTRON	ACTR3	ENSG00000115091.12	ENST00000443297.5:ENST00000263238.7:ENST00000415792.5:ENST00000446821.5:ENST00000535589.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	63	2	1.81152	2.386695	2.96187	0.034446	0.0114995	0.147767	0.0889104
chr2	32569901	32570000	732994	0	+	0.383838	(0.378,0.408]	chr2	84650	36	INTRON	INTRON	BIRC6	ENSG00000115760.15	ENST00000421745.7:ENST00000471232.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	43	2	2.23831	2.3866699999999996	2.53503	0.0319942	0.0179575	0.13174	0.114265
chr3	152324721	152324821	1535546	0	+	0.4	(0.378,0.408]	chr3	159996	224	INTRON	INTRON	MBNL1	ENSG00000152601.18	ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000495875.6:ENST00000324210.10:ENST00000493459.5:ENST00000459747.1:ENST00000460591.5:ENST00000545754.5:ENST00000357472.7:ENST00000324196.9:ENST00000498502.5:ENST00000463374.5:ENST00000485910.5:ENST00000465907.6:ENST00000492948.5:ENST00000485509.5:ENST00000464596.5	protein_coding	protein_coding	protein_coding	protein_coding	3	43	2	2.23831	2.3866699999999996	2.53503	0.0319942	0.0179575	0.13174	0.114265
chr6	158066935	158067035	3017878	0	+	0.4	(0.378,0.408]	chr6	281540	3	SS5_PROX	SS5_PROX:INTRON	SYNJ2	ENSG00000078269.15	ENST00000355585.9:ENST00000640338.1:ENST00000638626.1	protein_coding	protein_coding	protein_coding	protein_coding	3	43	2	2.23831	2.3866699999999996	2.53503	0.0319942	0.0179575	0.13174	0.114265
chr1	155309558	155309655	229159	0	+	0.453608	(0.44,0.476]	chr1	26833	6	EXON_MRNA	EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	FDPS	ENSG00000160752.15	ENST00000611010.4:ENST00000468479.5:ENST00000447866.5:ENST00000461507.5:ENST00000474345.5:ENST00000471117.5:ENST00000368356.9:ENST00000467076.5:ENST00000495308.5:ENST00000491013.5:ENST00000487002.1:ENST00000356657.10:ENST00000465559.5:ENST00000470171.5:ENST00000612683.1:ENST00000489003.5:ENST00000477057.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	50	2	2.03266	2.3866449999999997	2.74063	0.0176095	0.0155853	0.109411	0.105143
chr14	102724490	102724589	5823866	0	+	0.454545	(0.44,0.476]	chr14	552546	17	INTRON	INTRON	RCOR1	ENSG00000089902.10	ENST00000262241.7:ENST00000560472.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	50	2	2.03266	2.3866449999999997	2.74063	0.0176095	0.0155853	0.109411	0.105143
chr5	54109408	54109508	2618901	0	-	0.29	(0.28,0.32]	chr5	248841	335	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	98	2	2.03152	2.386635	2.74175	0.00983556	0.00457205	0.0877296	0.0595107
chr12	69372473	69372573	5164067	0	+	0.41	(0.408,0.44]	chr12	489118	11	INTRON	INTRON	YEATS4	ENSG00000127337.7	ENST00000548020.5:ENST00000247843.7	protein_coding	protein_coding	protein_coding	protein_coding	3	42	2	1.93243	2.3866	2.84077	0.0441194	0.0132196	0.162255	0.0940535
chr21	34864772	34864872	7447032	0	-	0.42	(0.408,0.44]	chr21	759849	48	INTRON	INTRON	RUNX1	ENSG00000159216.19	ENST00000300305.7:ENST00000675419.1:ENST00000437180.5:ENST00000344691.8:ENST00000482318.5:ENST00000399240.5:ENST00000358356.9:ENST00000399237.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	42	2	1.93243	2.3866	2.84077	0.0441194	0.0132196	0.162255	0.0940535
chr3	197254858	197254958	1903072	0	-	0.44	(0.408,0.44]	chr3	190659	286	INTRON	INTRON	DLG1	ENSG00000075711.21	ENST00000667157.1:ENST00000346964.6:ENST00000663148.1:ENST00000655488.1:ENST00000357674.9:ENST00000671185.1:ENST00000658701.1:ENST00000667104.1:ENST00000661336.1:ENST00000669565.1:ENST00000670455.1:ENST00000656087.1:ENST00000670366.1:ENST00000661453.1:ENST00000665728.1:ENST00000664564.1:ENST00000660432.1:ENST00000660898.1:ENST00000657381.1:ENST00000659221.1:ENST00000654737.1:ENST00000669332.1:ENST00000659716.1:ENST00000664991.1:ENST00000419354.5:ENST00000661440.1:ENST00000667971.1:ENST00000670935.1:ENST00000666007.1:ENST00000661229.1:ENST00000661013.1:ENST00000436682.6:ENST00000662727.1:ENST00000422288.6:ENST00000448528.6:ENST00000656944.1:ENST00000392382.6:ENST00000450955.5:ENST00000658155.1:ENST00000669714.1:ENST00000654733.1:ENST00000419227.5:ENST00000392381.7:ENST00000471733.5:ENST00000419553.6:ENST00000661808.1:ENST00000453607.5:ENST00000456699.6:ENST00000392380.6:ENST00000485409.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	42	2	1.93243	2.3866	2.84077	0.0441194	0.0132196	0.162255	0.0940535
chr4	1695040	1695140	2095047	0	-	0.44	(0.408,0.44]	chr4	207197	2	SS3_PROX	SS3_PROX:INTRON	SLBP	ENSG00000163950.13	ENST00000489418.6:ENST00000429429.6:ENST00000318386.8:ENST00000483348.5:ENST00000488267.5	protein_coding	protein_coding	protein_coding	protein_coding	3	42	2	1.93243	2.3866	2.84077	0.0441194	0.0132196	0.162255	0.0940535
chr19	38621717	38621815	7065560	0	+	0.377551	(0.35,0.378]	chr19	705437	9	INTRON	INTRON	EIF3K	ENSG00000178982.10	ENST00000614624.4:ENST00000593149.5:ENST00000588934.5:ENST00000538434.5:ENST00000593062.5:ENST00000586932.5:ENST00000248342.9:ENST00000545173.6:ENST00000591409.5:ENST00000586513.4:ENST00000588422.3:ENST00000592558.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	34	2	2.30249	2.38657	2.47065	0.0519726	0.0386172	0.176696	0.142656
chr6	45348626	45348725	3103696	0	-	0.353535	(0.35,0.378]	chr6	290493	253	INTRON	INTRON	SUPT3H	ENSG00000196284.17	ENST00000475057.5:ENST00000371459.6:ENST00000371460.5:ENST00000459689.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	34	2	2.30249	2.38657	2.47065	0.0519726	0.0386172	0.176696	0.142656
chr3	196933524	196933623	1597111	0	+	0.464646	(0.44,0.476]	chr3	165450	17	UTR3	UTR3:EXON_MRNA	SENP5	ENSG00000119231.11	ENST00000323460.10	protein_coding	protein_coding	protein_coding	protein_coding	9	119	2	2.32744	2.38653	2.44562	0.00170738	0.00135452	0.037419	0.0339121
chr1	225868822	225868919	646090	0	-	0.597938	(0.57,1]	chr1	76514	4	INTRON	INTRON	TMEM63A	ENSG00000196187.12	ENST00000366835.8	protein_coding	protein_coding	protein_coding	protein_coding	4	27	2	1.67986	2.386495	3.09313	0.0496395	0.00369015	0.174685	0.0535094
chr14	101793451	101793549	5818814	0	+	0.622449	(0.57,1]	chr14	551829	37	INTRON	INTRON	PPP2R5C	ENSG00000078304.20	ENST00000694906.1:ENST00000422945.6:ENST00000554442.5:ENST00000556068.5:ENST00000328724.9:ENST00000554504.1:ENST00000553890.1:ENST00000553554.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	73	2	2.36373	2.386485	2.40924	6.26777e-4	4.42392e-4	0.0230192	0.0190346
chr7	155310136	155310235	3451890	0	+	0.282828	(0.28,0.32]	chr7	322637	19	UTR3	UTR3:EXON_MRNA	INSIG1	ENSG00000186480.13	ENST00000344756.8:ENST00000340368.9	protein_coding	protein_coding	protein_coding	protein_coding	8	120	2	1.55075	2.386485	3.22222	0.0330294	4.01934e-4	0.133816	0.0180102
chr1	37537247	37537347	424094	0	-	0.44	(0.408,0.44]	chr1	51268	29	UTR3	UTR3:EXON_MRNA	SNIP1	ENSG00000163877.11	ENST00000296215.8:ENST00000638725.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	42	2	1.74775	2.38644	3.02513	0.0735403	0.0059965	0.190238	0.0700606
chr9	131214326	131214424	4216546	0	+	0.418367	(0.408,0.44]	chr9	386674	18	EXON_MRNA	EXON_MRNA:INTRON	NUP214	ENSG00000126883.19	ENST00000695497.1:ENST00000695498.1:ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000524578.6:ENST00000453861.6:ENST00000483497.6:ENST00000695500.1:ENST00000650694.1:ENST00000695501.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	42	2	1.74775	2.38644	3.02513	0.0735403	0.0059965	0.190238	0.0700606
chr20	34917742	34917841	7261410	0	+	0.424242	(0.408,0.44]	chr20	737688	21	INTRON	INTRON	ACSS2	ENSG00000131069.20	ENST00000481284.5:ENST00000475459.6:ENST00000477932.5:ENST00000480978.5:ENST00000360596.7:ENST00000253382.5:ENST00000476922.5:ENST00000468550.6:ENST00000493250.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	50	2	1.8749	2.386425	2.89795	0.0264246	0.0110735	0.133676	0.0873897
chr7	148829544	148829627	3670209	0	-	0.39759	(0.378,0.408]	chr7	340597	3	SS5_PROX	SS5_PROX:INTRON	EZH2	ENSG00000106462.12	ENST00000683292.1:ENST00000320356.7:ENST00000492143.5:ENST00000478654.5:ENST00000350995.6:ENST00000460911.5:ENST00000683744.1:ENST00000682317.1:ENST00000682263.1:ENST00000684300.1:ENST00000476773.5:ENST00000483967.5:ENST00000498186.5:ENST00000483012.1:ENST00000682401.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	43	2	2.04292	2.386425	2.72993	0.0326035	0.0188736	0.145164	0.108861
chrX	136878916	136879016	7897675	0	-	0.39	(0.378,0.408]	chrX	804176	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	RBMX	ENSG00000147274.14	ENST00000431446.7:ENST00000568578.5:ENST00000419968.6:ENST00000464781.5:ENST00000320676.11:ENST00000562646.5:ENST00000565438.1:ENST00000567262.5:ENST00000563370.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	43	2	2.04292	2.386425	2.72993	0.0326035	0.0188736	0.145164	0.108861
chr9	130878567	130878667	4215516	0	+	0.45	(0.44,0.476]	chr9	386470	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000318560.6	protein_coding	protein_coding	protein_coding	protein_coding	5	67	2	2.38519	2.38641	2.38763	0.012193	0.00394089	0.0910127	0.0573041
chr5	105218897	105218997	2694615	0	-	0.47	(0.44,0.476]	chr5	254244	2096	INTRON	INTRON	ENSG00000251574:ENSG00000253584	ENSG00000251574.8:ENSG00000253584.1	ENST00000503650.1:ENST00000522464.1	lncRNA	lncRNA	lncRNA	lncRNA	5	67	2	2.1762	2.38626	2.59632	0.0092251	0.00579248	0.0855292	0.0662959
chr2	20283041	20283136	1076091	0	-	0.378947	(0.378,0.408]	chr2	114969	2	CDS	CDS:EXON_MRNA	PUM2	ENSG00000055917.16	ENST00000338086.9:ENST00000361078.7:ENST00000440577.5	protein_coding	protein_coding	protein_coding	protein_coding	8	86	2	1.98294	2.3862	2.78946	0.0158859	0.00311505	0.101453	0.0512673
chr3	37258963	37259062	1395911	0	+	0.363636	(0.35,0.378]	chr3	146319	71	INTRON	INTRON	GOLGA4	ENSG00000144674.17	ENST00000435830.6:ENST00000444882.5:ENST00000356847.8:ENST00000450863.6:ENST00000361924.7:ENST00000429018.5:ENST00000431105.1:ENST00000419177.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	111	2	1.97767	2.386195	2.79472	0.00335504	0.00303911	0.0531599	0.0493883
chr12	756119	756219	5056212	0	+	0.3	(0.28,0.32]	chr12	477423	14	INTRON	INTRON	WNK1	ENSG00000060237.19	ENST00000315939.11:ENST00000340908.9:ENST00000535572.5:ENST00000537687.5:ENST00000530271.6:ENST00000447667.2	protein_coding	protein_coding	protein_coding	protein_coding	4	64	2	2.14534	2.3861	2.62686	0.0289217	0.0117054	0.1274	0.0962115
chr4	2241019	2241093	2098040	0	-	0.297297	(0.28,0.32]	chr4	207588	2	UTR5	UTR5:EXON_MRNA	HAUS3	ENSG00000214367.9	ENST00000672739.1:ENST00000672725.1:ENST00000506763.5:ENST00000243706.8:ENST00000443786.3:ENST00000514395.1:ENST00000502440.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	64	2	2.14534	2.3861	2.62686	0.0289217	0.0117054	0.1274	0.0962115
chr17	5606156	5606256	6716072	0	-	0.4	(0.378,0.408]	chr17	658490	213	INTRON	INTRON	NLRP1	ENSG00000091592.16	ENST00000576905.5:ENST00000572143.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	72	2	1.29896	2.38609	3.47322	0.0575113	0.00147803	0.187655	0.0348908
chr1	167545600	167545700	576958	0	-	0.5	(0.476,0.515]	chr1	69952	1	SS5_PROX	SS5_PROX:INTRON	CREG1	ENSG00000143162.9	ENST00000466652.2:ENST00000370509.5	protein_coding	protein_coding	protein_coding	protein_coding	9	111	2	2.04777	2.3859899999999996	2.72421	0.00319642	0.00107964	0.05208	0.0302522
chr1	28769409	28769500	58674	0	+	0.351648	(0.35,0.378]	chr1	7609	6	UTR3	UTR3:EXON_MRNA	YTHDF2	ENSG00000198492.16	ENST00000542507.5:ENST00000373812.8:ENST00000541996.5	protein_coding	protein_coding	protein_coding	protein_coding	8	102	2	1.69756	2.38597	3.07438	0.0149371	9.54868e-4	0.107462	0.0282401
chr6	34879353	34879444	3086243	0	-	0.241758	[0,0.28]	chr6	288704	8	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	TAF11	ENSG00000064995.19	ENST00000361288.9:ENST00000650109.1:ENST00000693593.1:ENST00000420584.3:ENST00000689560.1:ENST00000685682.1:ENST00000691871.1:ENST00000686190.1:ENST00000687970.1:ENST00000688059.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	61	2	2.02265	2.3858300000000003	2.74901	0.0449017	0.0188843	0.149888	0.118148
chr6	13666422	13666522	3058771	0	-	0.35	(0.32,0.35]	chr6	284542	72	INTRON	INTRON	RANBP9	ENSG00000010017.13	ENST00000011619.6	protein_coding	protein_coding	protein_coding	protein_coding	3	48	2	2.13945	2.3857749999999998	2.6321	0.0268	0.0254517	0.133676	0.123349
chr7	7207730	7207830	3274842	0	+	0.34	(0.32,0.35]	chr7	304569	246	INTRON	INTRON	C1GALT1	ENSG00000106392.11	ENST00000429911.5:ENST00000436587.7:ENST00000467716.1:ENST00000476068.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	48	2	2.13945	2.3857749999999998	2.6321	0.0268	0.0254517	0.133676	0.123349
chr19	40802574	40802668	7070474	0	+	0.595745	(0.57,1]	chr19	706570	8	INTRON	INTRON	EGLN2	ENSG00000269858.6	ENST00000303961.9:ENST00000406058.6:ENST00000593726.5:ENST00000597746.5	protein_coding	protein_coding	protein_coding	protein_coding	4	27	2	1.74185	2.38576	3.02967	0.0401765	0.00471306	0.143911	0.0631419
chr2	233447392	233447489	1040776	0	+	0.608247	(0.57,1]	chr2	111059	2	INTRON	INTRON	DGKD	ENSG00000077044.11	ENST00000264057.7:ENST00000409813.7:ENST00000490764.5:ENST00000430834.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	27	2	1.74185	2.38576	3.02967	0.0401765	0.00471306	0.143911	0.0631419
chr4	895487	895581	2093914	0	-	0.617021	(0.57,1]	chr4	206942	8	INTRON	INTRON	GAK	ENSG00000178950.18	ENST00000314167.9:ENST00000511163.5:ENST00000505819.5:ENST00000507580.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	27	2	1.74185	2.38576	3.02967	0.0401765	0.00471306	0.143911	0.0631419
chr14	21261014	21261113	5835083	0	-	0.50505	(0.476,0.515]	chr14	554465	61	INTRON	INTRON	HNRNPC	ENSG00000092199.19	ENST00000336053.10:ENST00000553300.6:ENST00000554969.5:ENST00000556142.5:ENST00000554455.5:ENST00000430246.6:ENST00000553753.5:ENST00000555309.5:ENST00000555914.5:ENST00000557442.5:ENST00000556628.5:ENST00000556513.5:ENST00000555883.5:ENST00000557201.5:ENST00000556897.5:ENST00000420743.6:ENST00000554539.5:ENST00000554383.5:ENST00000555215.5:ENST00000555137.5:ENST00000554891.5:ENST00000556226.5:ENST00000555176.5:ENST00000553614.5:ENST00000557336.1:ENST00000557768.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	85	2	1.62782	2.385725	3.14363	0.0274391	4.25082e-4	0.123904	0.018441
chr19	58389379	58389479	7107602	0	+	0.38	(0.378,0.408]	chr19	713447	5	INTRON	INTRON	RPS5	ENSG00000083845.9	ENST00000601521.5:ENST00000596314.5:ENST00000598098.5:ENST00000196551.8:ENST00000598495.5:ENST00000598807.1:ENST00000596046.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	44	2	1.81685	2.38572	2.95459	0.0597868	0.00957623	0.189982	0.0820838
chr13	113185854	113185953	5651821	0	-	0.40404	(0.378,0.408]	chr13	538587	4	EXON_LNCRNA	EXON_LNCRNA:SS3_PROX:INTRON	PCID2	ENSG00000126226.22	ENST00000337344.9:ENST00000622406.4:ENST00000375479.6:ENST00000375477.5:ENST00000246505.9:ENST00000375459.5:ENST00000493650.5:ENST00000375457.2:ENST00000473462.5:ENST00000475433.5:ENST00000480971.5:ENST00000484641.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	70	2	2.30628	2.385685	2.46509	0.0163339	0.00287152	0.101571	0.0494641
chr1	21741795	21741895	396443	0	-	0.45	(0.44,0.476]	chr1	47304	48	INTRON	INTRON	USP48	ENSG00000090686.16	ENST00000400301.5:ENST00000308271.14:ENST00000529637.5:ENST00000421625.6:ENST00000374730.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	78	2	1.5191	2.3856599999999997	3.25222	0.0526241	2.39476e-4	0.160983	0.0136403
chr10	74061989	74062088	4455142	0	+	0.464646	(0.44,0.476]	chr10	411397	185	INTRON	INTRON	VCL	ENSG00000035403.18	ENST00000623461.3:ENST00000372755.7:ENST00000624354.3:ENST00000211998.10:ENST00000478896.2:ENST00000461383.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	43	2	2.19078	2.385555	2.58033	0.0247511	0.0226089	0.131869	0.117489
chr5	139300465	139300565	2499448	0	+	0.25	[0,0.28]	chr5	238913	6	INTRON	INTRON	MATR3	ENSG00000280987.4:ENSG00000015479.20	ENST00000509990.5:ENST00000506147.5:ENST00000512107.5:ENST00000361059.7:ENST00000394800.6:ENST00000502929.5:ENST00000504203.5:ENST00000514694.5:ENST00000509644.5:ENST00000505016.2:ENST00000502394.1:ENST00000512876.5:ENST00000513678.5:ENST00000513121.1:ENST00000504045.5:ENST00000504311.5:ENST00000502499.5:ENST00000510056.5:ENST00000511249.5:ENST00000394805.8:ENST00000507860.1:ENST00000509918.5:ENST00000503811.5:ENST00000511978.5:ENST00000618441.5:ENST00000508689.1:ENST00000514528.5:ENST00000504643.5:ENST00000514488.1:ENST00000503340.1:ENST00000504023.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	98	2	2.36941	2.385515	2.40162	0.0178556	0.00511828	0.106151	0.064713
chr1	1115021	1115075	358802	0	-	0.462963	(0.44,0.476]	chr1	41378	1	UTR5	UTR5:EXON_MRNA:INTRON	C1orf159	ENSG00000131591.18	ENST00000379339.5:ENST00000379325.7:ENST00000421241.7:ENST00000467751.5:ENST00000477196.5:ENST00000434641.5:ENST00000482816.5:ENST00000462097.5:ENST00000475119.5:ENST00000472741.5:ENST00000480643.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	42	2	1.85146	2.3854800000000003	2.9195	0.0545846	0.0102021	0.182529	0.0850389
chr1	2264942	2265042	2533	0	+	0.52	(0.515,0.57]	chr1	557	165	INTRON	INTRON	SKI	ENSG00000157933.10	ENST00000378536.5:ENST00000508416.1:ENST00000478223.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	40	2	2.23241	2.38543	2.53845	0.0581268	0.00632226	0.188651	0.0687526
chr2	241317917	241318008	1053625	0	+	0.384615	(0.378,0.408]	chr2	112189	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SEPTIN2	ENSG00000168385.18	ENST00000391973.6:ENST00000428282.5:ENST00000492978.5:ENST00000360051.7:ENST00000407017.5:ENST00000445030.5:ENST00000428524.5:ENST00000469434.5:ENST00000616972.4:ENST00000495463.5:ENST00000482304.5:ENST00000475474.5:ENST00000401990.5:ENST00000469175.5:ENST00000407971.5:ENST00000461048.5:ENST00000457335.5:ENST00000436795.5:ENST00000494824.5:ENST00000411484.5:ENST00000462147.5:ENST00000434955.5:ENST00000466211.5:ENST00000391971.7:ENST00000402092.6:ENST00000484740.1:ENST00000473479.5:ENST00000464128.5:ENST00000441533.5:ENST00000467971.5:ENST00000425899.5:ENST00000443492.5:ENST00000437066.5:ENST00000429791.5:ENST00000420786.5:ENST00000475823.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	70	2	2.14029	2.38543	2.63057	0.0106742	0.0053733	0.0917199	0.0642754
chr6	12092532	12092632	2815032	0	+	0.35	(0.32,0.35]	chr6	264806	29	INTRON	INTRON	HIVEP1	ENSG00000095951.17	ENST00000491710.5:ENST00000487103.5:ENST00000379388.7:ENST00000627968.2:ENST00000541134.5:ENST00000442081.6:ENST00000478545.1	protein_coding	protein_coding	protein_coding	protein_coding	4	59	2	1.69107	2.3854100000000003	3.07975	0.0517392	0.00554235	0.159306	0.0674105
chr18	62763713	62763813	6923047	0	+	0.4	(0.378,0.408]	chr18	685172	461	INTRON	INTRON	PHLPP1	ENSG00000081913.14	ENST00000262719.10	protein_coding	protein_coding	protein_coding	protein_coding	3	44	2	2.05897	2.3853999999999997	2.71183	0.0339294	0.0170789	0.134508	0.110899
chr21	21220946	21221046	7381219	0	+	0.4	(0.378,0.408]	chr21	752602	2220	INTRON	INTRON	NCAM2	ENSG00000154654.15	ENST00000400546.6	protein_coding	protein_coding	protein_coding	protein_coding	3	44	2	2.05897	2.3853999999999997	2.71183	0.0339294	0.0170789	0.134508	0.110899
chr19	10667939	10668038	7013349	0	+	0.424242	(0.408,0.44]	chr19	696763	9	INTRON	INTRON	ILF3	ENSG00000129351.17	ENST00000449870.5:ENST00000587928.5:ENST00000407004.7:ENST00000589998.5:ENST00000589600.5:ENST00000589283.5:ENST00000590009.5:ENST00000593199.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	50	2	1.93002	2.385395	2.84077	0.022095	0.0132196	0.123903	0.0940535
chr10	11562188	11562288	4555569	0	-	0.5	(0.476,0.515]	chr10	420447	301	INTRON	INTRON	USP6NL	ENSG00000148429.15	ENST00000609104.6:ENST00000379237.6	protein_coding	protein_coding	protein_coding	protein_coding	7	86	2	1.65426	2.385365	3.11647	0.0231344	6.41912e-4	0.126939	0.0231685
chr19	51875295	51875394	7204277	0	-	0.424242	(0.408,0.44]	chr19	731044	12	INTRON	INTRON	ZNF577	ENSG00000161551.15	ENST00000638827.1:ENST00000639703.1:ENST00000640678.1:ENST00000640955.1:ENST00000301399.12:ENST00000638348.2:ENST00000451628.9:ENST00000639636.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	65	2	1.35739	2.38531	3.41323	0.063317	0.00129989	0.177047	0.0333764
chr5	69369072	69369170	2637113	0	-	0.428571	(0.408,0.44]	chr5	250494	21	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	AK6:TAF9	ENSG00000085231.14:ENSG00000273841.6	ENST00000380822.9:ENST00000502819.5:ENST00000380818.7:ENST00000512561.5:ENST00000618980.1:ENST00000685776.1:ENST00000506736.2:ENST00000217893.10:ENST00000688968.1:ENST00000504109.6:ENST00000691076.1:ENST00000693414.1:ENST00000328663.8:ENST00000693538.1:ENST00000508954.4:ENST00000691515.1:ENST00000690749.1:ENST00000686157.1:ENST00000503245.6:ENST00000512152.6:ENST00000509462.6:ENST00000691555.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	50	2	1.81759	2.385275	2.95296	0.0316273	0.00929354	0.144405	0.0817766
chr7	151233612	151233711	3448981	0	+	0.424242	(0.408,0.44]	chr7	322282	9	UTR5	UTR5:EXON_MRNA:SS3_PROX:INTRON	CHPF2	ENSG00000033100.17	ENST00000035307.7:ENST00000495645.5:ENST00000482173.6:ENST00000691224.1:ENST00000685322.1:ENST00000692651.1:ENST00000690577.1:ENST00000690444.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	118	2	2.28817	2.3852700000000002	2.48237	0.00358507	5.72623e-4	0.0533855	0.0217398
chr16	29506997	29507097	6470635	0	-	0.32	(0.28,0.32]	chr16	625147	11	INTRON	INTRON	ENSG00000288632	ENSG00000288632.1	ENST00000675579.1	lncRNA	lncRNA	lncRNA	lncRNA	4	65	2	1.79721	2.38527	2.97333	0.0408024	0.00857834	0.1451	0.083729
chr21	14759644	14759744	7430187	0	-	0.25	[0,0.28]	chr21	757888	52	INTRON	INTRON	ENSG00000232884	ENSG00000232884.10	ENST00000673788.1:ENST00000674136.1	lncRNA	lncRNA	lncRNA	lncRNA	5	83	2	1.87045	2.385135	2.89982	0.0191786	0.0158893	0.119771	0.101453
chr22	18559841	18559940	7550950	0	-	0.575758	(0.57,1]	chr22	771829	69	INTRON	INTRON	PI4KAP1	ENSG00000274602.5	ENST00000612500.4:ENST00000611748.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	7	48	2	2.161	2.3850800000000003	2.60916	0.00462668	0.00119055	0.062717	0.0315806
chr7	92205686	92205785	3569732	0	-	0.383838	(0.378,0.408]	chr7	332510	12	INTRON	INTRON	ENSG00000289027:KRIT1	ENSG00000289027.1:ENSG00000001631.17	ENST00000692281.1:ENST00000693096.1:ENST00000688180.1:ENST00000394507.5:ENST00000692807.1:ENST00000340022.6:ENST00000394505.7:ENST00000486261.5:ENST00000458177.7:ENST00000684808.1:ENST00000444960.6:ENST00000691239.1:ENST00000686094.1:ENST00000686527.1:ENST00000690529.1:ENST00000689411.1:ENST00000688665.1:ENST00000692157.1:ENST00000686043.1:ENST00000690720.1:ENST00000692690.1:ENST00000690908.1:ENST00000691827.1:ENST00000690751.1:ENST00000425073.2:ENST00000687876.1:ENST00000690904.1:ENST00000688781.1:ENST00000686785.1:ENST00000689556.1:ENST00000688314.1:ENST00000688404.1:ENST00000690292.1:ENST00000687135.1:ENST00000689082.1:ENST00000686149.1:ENST00000475770.6:ENST00000454017.6:ENST00000692361.1:ENST00000689778.1:ENST00000686619.1:ENST00000688766.1:ENST00000688580.1:ENST00000693563.1:ENST00000685431.1:ENST00000689539.1:ENST00000412043.6:ENST00000394503.6:ENST00000433016.6:ENST00000445516.2:ENST00000686233.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	62	2	1.71619	2.38506	3.05393	0.0300647	0.00551532	0.129153	0.0672816
chr14	103440774	103440871	5826188	0	+	0.391753	(0.378,0.408]	chr14	552832	21	INTRON	INTRON	MARK3	ENSG00000075413.19	ENST00000678179.1:ENST00000676838.1:ENST00000677348.1:ENST00000677404.1:ENST00000676694.1:ENST00000676938.1:ENST00000678619.1:ENST00000676897.1:ENST00000677214.1:ENST00000677942.1:ENST00000676830.1:ENST00000678999.1:ENST00000677228.1:ENST00000556744.2:ENST00000677104.1:ENST00000679330.1:ENST00000560417.6:ENST00000440884.7:ENST00000676475.1:ENST00000677035.1:ENST00000678022.1:ENST00000677560.1:ENST00000561314.6:ENST00000429436.7:ENST00000677118.1:ENST00000676564.1:ENST00000678169.1:ENST00000678175.1:ENST00000678897.1:ENST00000678278.1:ENST00000676645.1:ENST00000677829.1:ENST00000678302.1:ENST00000677133.1:ENST00000561164.2:ENST00000558223.6:ENST00000559328.6:ENST00000678207.1:ENST00000677360.1:ENST00000676905.1:ENST00000678343.1:ENST00000677347.1:ENST00000678071.1:ENST00000677432.1:ENST00000678237.1:ENST00000677604.1:ENST00000676518.1:ENST00000677051.1:ENST00000677857.1:ENST00000677869.1:ENST00000678423.1:ENST00000560603.6:ENST00000416682.6:ENST00000303622.13:ENST00000216288.11:ENST00000679105.1:ENST00000553942.5:ENST00000335102.9:ENST00000561225.1:ENST00000678091.1:ENST00000561071.5:ENST00000558698.5:ENST00000559268.5:ENST00000560731.5:ENST00000676745.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	96	2	2.04001	2.38502	2.73003	0.00996995	8.35208e-4	0.08427	0.0263691
chr12	53472994	53473092	5143112	0	+	0.428571	(0.408,0.44]	chr12	485448	8	INTRON	INTRON	PCBP2	ENSG00000197111.16	ENST00000546463.6:ENST00000437231.5:ENST00000447282.5:ENST00000359282.9:ENST00000549863.5:ENST00000359462.9:ENST00000552296.6:ENST00000552819.5:ENST00000455667.7:ENST00000439930.7:ENST00000548933.5:ENST00000562264.5:ENST00000550585.5:ENST00000553064.6:ENST00000547859.2:ENST00000547048.5:ENST00000550733.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	31	2	2.18807	2.3849299999999998	2.58179	0.0708044	0.024638	0.184528	0.131869
chr2	238449083	238449182	1052791	0	+	0.414141	(0.408,0.44]	chr2	112004	27	UTR3	UTR3:EXON_MRNA:INTRON	ASB1	ENSG00000065802.12	ENST00000264607.9:ENST00000481566.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	31	2	2.18807	2.3849299999999998	2.58179	0.0708044	0.024638	0.184528	0.131869
chr21	43679202	43679301	7412966	0	+	0.414141	(0.408,0.44]	chr21	755443	19	INTRON	INTRON	RRP1B	ENSG00000160208.13	ENST00000340648.6	protein_coding	protein_coding	protein_coding	protein_coding	2	31	2	2.18807	2.3849299999999998	2.58179	0.0708044	0.024638	0.184528	0.131869
chr20	58898189	58898283	7291081	0	+	0.404255	(0.378,0.408]	chr20	741831	9	EXON_MRNA	EXON_MRNA:INTRON	GNAS	ENSG00000087460.29	ENST00000313949.11:ENST00000371075.7:ENST00000419558.7:ENST00000371098.6:ENST00000657090.1:ENST00000453292.7:ENST00000306090.12:ENST00000491348.5:ENST00000472183.6:ENST00000462499.6:ENST00000482112.6:ENST00000663479.2:ENST00000493744.5:ENST00000490374.6:ENST00000467227.6:ENST00000676826.2:ENST00000481768.6:ENST00000371100.9:ENST00000371102.8:ENST00000464624.7:ENST00000349036.9:ENST00000423897.7:ENST00000464960.5:ENST00000488546.6:ENST00000667293.2:ENST00000481039.6:ENST00000467321.6:ENST00000477931.5:ENST00000485673.6:ENST00000470512.6:ENST00000464788.6:ENST00000469431.6:ENST00000604005.6:ENST00000478585.6:ENST00000480975.5:ENST00000480232.6:ENST00000484504.5:ENST00000683015.1:ENST00000461152.6:ENST00000371095.7:ENST00000265620.11:ENST00000354359.12:ENST00000371085.8:ENST00000468895.6:ENST00000371081.5:ENST00000338783.7:ENST00000682803.1:ENST00000488652.6:ENST00000476935.6:ENST00000492907.6:ENST00000603546.2:ENST00000684284.1:ENST00000682134.1:ENST00000682829.1:ENST00000483387.2:ENST00000487862.5:ENST00000496934.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	58	2	2.30628	2.384865	2.46345	0.0163339	0.00827342	0.101571	0.0813266
chr21	29045280	29045378	7390181	0	+	0.397959	(0.378,0.408]	chr21	753021	13	INTRON	INTRON	USP16	ENSG00000156256.15	ENST00000399975.7:ENST00000334352.8:ENST00000474835.5:ENST00000399976.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	58	2	2.30628	2.384865	2.46345	0.0163339	0.00827342	0.101571	0.0813266
chr1	46299510	46299605	442879	0	-	0.484211	(0.476,0.515]	chr1	53649	13	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	LRRC41	ENSG00000132128.18	ENST00000617190.5:ENST00000343304.10:ENST00000615587.4:ENST00000472710.2:ENST00000498402.2:ENST00000469150.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	67	2	2.13573	2.3848450000000003	2.63396	0.0119549	0.00426634	0.0899583	0.0596808
chr15	28149608	28149707	6122261	0	-	0.414141	(0.408,0.44]	chr15	583058	29	INTRON	INTRON	HERC2	ENSG00000128731.18	ENST00000261609.13:ENST00000650509.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	31	2	2.27698	2.38478	2.49258	0.0583528	0.0314608	0.167723	0.144381
chr2	224543623	224543722	1335921	0	-	0.434343	(0.408,0.44]	chr2	140151	76	INTRON	INTRON	CUL3	ENSG00000036257.14	ENST00000344951.8:ENST00000264414.9:ENST00000409096.5:ENST00000409777.5:ENST00000432260.2:ENST00000436172.1:ENST00000546102.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	31	2	2.27698	2.38478	2.49258	0.0583528	0.0314608	0.167723	0.144381
chr21	45121059	45121159	7418321	0	+	0.44	(0.408,0.44]	chr21	756280	1	SS5_PROX	SS5_PROX:INTRON	ADARB1	ENSG00000197381.17	ENST00000462214.5:ENST00000460734.5:ENST00000348831.9:ENST00000389861.7:ENST00000389863.8:ENST00000492414.5:ENST00000496664.5:ENST00000437626.5:ENST00000449478.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	31	2	2.27698	2.38478	2.49258	0.0583528	0.0314608	0.167723	0.144381
chr4	6787537	6787637	1921636	0	+	0.41	(0.408,0.44]	chr4	192985	43	INTRON	INTRON	KIAA0232	ENSG00000170871.12	ENST00000503278.1:ENST00000508423.1:ENST00000307659.6:ENST00000425103.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	31	2	2.27698	2.38478	2.49258	0.0583528	0.0314608	0.167723	0.144381
chr5	60772993	60773093	2627740	0	-	0.43	(0.408,0.44]	chr5	249656	5	INTRON	INTRON	ELOVL7	ENSG00000164181.14	ENST00000508821.6:ENST00000425382.5:ENST00000505959.5:ENST00000504455.5:ENST00000507047.5:ENST00000511799.5:ENST00000514809.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	31	2	2.27698	2.38478	2.49258	0.0583528	0.0314608	0.167723	0.144381
chr7	64821048	64821148	3320616	0	+	0.41	(0.408,0.44]	chr7	308722	50	INTRON	INTRON	ZNF138	ENSG00000197008.10	ENST00000359735.7:ENST00000440155.6:ENST00000494380.5:ENST00000307355.12:ENST00000437743.1:ENST00000440598.2:ENST00000430838.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	31	2	2.27698	2.38478	2.49258	0.0583528	0.0314608	0.167723	0.144381
chr9	137635009	137635108	4223632	0	+	0.414141	(0.408,0.44]	chr9	388152	146	INTRON	INTRON	EHMT1	ENSG00000181090.21	ENST00000462484.5:ENST00000371394.6:ENST00000630754.2:ENST00000460843.6:ENST00000626216.2:ENST00000637593.1:ENST00000629335.2:ENST00000637335.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	31	2	2.27698	2.38478	2.49258	0.0583528	0.0314608	0.167723	0.144381
chr7	44626961	44627061	3314491	0	+	0.4	(0.378,0.408]	chr7	307897	20	INTRON	INTRON	OGDH	ENSG00000105953.16	ENST00000439616.6:ENST00000443864.6:ENST00000449767.5:ENST00000447398.5:ENST00000419661.5:ENST00000222673.6:ENST00000444676.5	protein_coding	protein_coding	protein_coding	protein_coding	4	53	2	1.77782	2.38476	2.9917	0.0388177	0.0068789	0.143072	0.0749442
chr12	62568329	62568427	5152213	0	+	0.387755	(0.378,0.408]	chr12	487617	15	INTRON	INTRON	MON2	ENSG00000061987.16	ENST00000641654.1:ENST00000546600.5:ENST00000393630.8:ENST00000547095.5:ENST00000552738.5:ENST00000393629.6:ENST00000551307.5:ENST00000547287.1:ENST00000549539.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	32	2	2.13703	2.3847500000000004	2.63247	0.0797592	0.0215745	0.19979	0.123836
chr15	65719878	65719977	6209057	0	-	0.393939	(0.378,0.408]	chr15	592545	15	INTRON	INTRON	DENND4A	ENSG00000174485.16	ENST00000443035.8:ENST00000431932.6:ENST00000635620.2:ENST00000564674.5:ENST00000568515.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	32	2	2.13703	2.3847500000000004	2.63247	0.0797592	0.0215745	0.19979	0.123836
chr3	156543569	156543669	1844392	0	-	0.4	(0.378,0.408]	chr3	185574	3	SS3_PROX	SS3_PROX:INTRON	SSR3	ENSG00000114850.7	ENST00000265044.7:ENST00000467789.5:ENST00000476217.5:ENST00000498205.5:ENST00000478842.5:ENST00000464138.1:ENST00000463503.5:ENST00000496050.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	32	2	2.13703	2.3847500000000004	2.63247	0.0797592	0.0215745	0.19979	0.123836
chr8	140898560	140898660	4079044	0	-	0.39	(0.378,0.408]	chr8	370543	74	INTRON	INTRON	PTK2	ENSG00000169398.20	ENST00000696786.1:ENST00000522684.5:ENST00000395218.3:ENST00000521059.5:ENST00000517887.5:ENST00000519993.5:ENST00000340930.7:ENST00000519419.5:ENST00000524357.5:ENST00000521791.5:ENST00000523067.5:ENST00000520828.5:ENST00000520475.5:ENST00000519881.5:ENST00000520892.5:ENST00000523803.5:ENST00000521907.5:ENST00000517453.5:ENST00000520045.5:ENST00000521395.5:ENST00000523675.1:ENST00000521332.5:ENST00000524040.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	32	2	2.13703	2.3847500000000004	2.63247	0.0797592	0.0215745	0.19979	0.123836
chr9	4808287	4808387	4095019	0	+	0.38	(0.378,0.408]	chr9	373155	147	INTRON	INTRON	RCL1	ENSG00000120158.12	ENST00000381750.9:ENST00000381732.3:ENST00000442869.5:ENST00000473230.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	32	2	2.13703	2.3847500000000004	2.63247	0.0797592	0.0215745	0.19979	0.123836
chr14	31003059	31003159	5857640	0	-	0.53	(0.515,0.57]	chr14	556508	387	INTRON	INTRON	STRN3	ENSG00000196792.12	ENST00000355683.9:ENST00000357479.10:ENST00000555358.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	52	2	2.16051	2.38475	2.60899	0.0232669	0.0046825	0.118148	0.0631419
chr1	186364338	186364436	604320	0	-	0.326531	(0.32,0.35]	chr1	72177	5	INTRON	INTRON	TPR	ENSG00000047410.14	ENST00000367478.9:ENST00000474852.1:ENST00000613151.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	48	2	2.19668	2.3846550000000004	2.57263	0.0312297	0.021398	0.13151	0.123719
chr9	120789948	120790045	4335432	0	-	0.340206	(0.32,0.35]	chr9	398263	13	INTRON	INTRON	FBXW2	ENSG00000119402.18	ENST00000684405.1:ENST00000684001.1:ENST00000684047.1:ENST00000608872.6:ENST00000453291.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	48	2	2.19668	2.3846550000000004	2.57263	0.0312297	0.021398	0.13151	0.123719
chr16	87744621	87744720	6538458	0	-	0.262626	[0,0.28]	chr16	633538	17	INTRON	INTRON	KLHDC4	ENSG00000104731.14	ENST00000567298.5:ENST00000270583.10:ENST00000347925.9:ENST00000353170.9:ENST00000316853.10:ENST00000562155.5:ENST00000622456.4:ENST00000562261.1:ENST00000566661.5:ENST00000564484.5:ENST00000565328.5:ENST00000569747.5:ENST00000564396.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	60	2	1.812	2.384645	2.95729	0.0729149	0.0101824	0.189235	0.089002
chr20	32785159	32785259	7256885	0	+	0.51	(0.476,0.515]	chr20	737137	3	SS5_PROX	SS5_PROX:INTRON	DNMT3B	ENSG00000088305.19	ENST00000696232.1:ENST00000328111.6:ENST00000696231.1:ENST00000348286.6:ENST00000353855.6:ENST00000696233.1:ENST00000443239.7:ENST00000696234.1:ENST00000696235.1:ENST00000456297.6:ENST00000696236.1:ENST00000696237.1:ENST00000201963.3:ENST00000696238.1:ENST00000696239.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	64	2	1.77073	2.3846249999999998	2.99852	0.0151174	0.0077575	0.108513	0.0757402
chr6	147334820	147334919	2990031	0	+	0.30303	(0.28,0.32]	chr6	280108	2	INTRON	INTRON	STXBP5	ENSG00000164506.15	ENST00000321680.11:ENST00000367481.7:ENST00000367480.7:ENST00000367475.6:ENST00000392291.2	protein_coding	protein_coding	protein_coding	protein_coding	6	98	2	2.00031	2.38457	2.76883	0.0110488	0.00414663	0.0928193	0.0568239
chr1	112926704	112926803	523845	0	-	0.515152	(0.476,0.515]	chr1	61677	42	INTRON	INTRON	SLC16A1	ENSG00000155380.13	ENST00000679803.1:ENST00000369626.8:ENST00000443580.6:ENST00000538576.5:ENST00000429288.2:ENST00000458229.6:ENST00000679846.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	76	2	2.03337	2.384505	2.73564	0.00851546	0.00333144	0.0833995	0.0512081
chr16	21970540	21970636	6319721	0	+	0.354167	(0.35,0.378]	chr16	604998	15	INTRON	INTRON	UQCRC2	ENSG00000140740.11	ENST00000268379.9:ENST00000561553.5:ENST00000563898.5:ENST00000563711.5:ENST00000567810.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	45	2	2.23043	2.3844950000000003	2.53856	0.0326077	0.0187487	0.133687	0.117523
chr13	51445818	51445918	5595979	0	-	0.4	(0.378,0.408]	chr13	534843	95	UTR3	UTR3:EXON_MRNA:INTRON	INTS6	ENSG00000102786.15	ENST00000398119.6:ENST00000311234.9:ENST00000469430.5:ENST00000486195.6:ENST00000491189.5:ENST00000491723.5:ENST00000461515.5:ENST00000491997.2:ENST00000488009.1:ENST00000485178.5:ENST00000483288.5:ENST00000442263.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	32	2	2.30961	2.384465	2.45932	0.055088	0.0346754	0.165463	0.148144
chr2	159274259	159274357	1249374	0	-	0.408163	(0.378,0.408]	chr2	132480	21	INTRON	INTRON	WDSUB1	ENSG00000196151.11	ENST00000359774.9:ENST00000358147.8:ENST00000409990.7:ENST00000392796.7:ENST00000409124.1	protein_coding	protein_coding	protein_coding	protein_coding	2	32	2	2.30961	2.384465	2.45932	0.055088	0.0346754	0.165463	0.148144
chr7	132933048	132933148	3644393	0	-	0.4	(0.378,0.408]	chr7	338848	457	INTRON	INTRON	CHCHD3	ENSG00000106554.13	ENST00000262570.10:ENST00000448878.6:ENST00000496427.5:ENST00000423635.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	32	2	2.30961	2.384465	2.45932	0.055088	0.0346754	0.165463	0.148144
chr14	31013445	31013545	5857744	0	-	0.39	(0.378,0.408]	chr14	556508	491	INTRON	INTRON	STRN3	ENSG00000196792.12	ENST00000355683.9:ENST00000357479.10:ENST00000555358.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	122	2	2.04763	2.384385	2.72114	0.00619436	3.34676e-4	0.0678171	0.01628
chr4	1812165	1812263	2095306	0	-	0.459184	(0.44,0.476]	chr4	207261	8	UTR3	UTR3:EXON_MRNA	LETM1	ENSG00000168924.15	ENST00000302787.3	protein_coding	protein_coding	protein_coding	protein_coding	18	233	2	2.2838	2.38438	2.48496	3.22248e-4	2.75077e-4	0.0159645	0.0151959
chr16	70401494	70401594	6511088	0	-	0.46	(0.44,0.476]	chr16	630688	4	SS3_PROX	SS3_PROX:INTRON	ST3GAL2	ENSG00000157350.13	ENST00000342907.3:ENST00000566097.1:ENST00000561708.1:ENST00000567586.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	68	2	2.2193	2.38437	2.54944	0.00896114	0.00591346	0.0800073	0.0694038
chr13	95731650	95731750	5517744	0	+	0.49	(0.476,0.515]	chr13	527661	60	INTRON	INTRON	DNAJC3	ENSG00000102580.15	ENST00000602402.6:ENST00000376795.6	protein_coding	protein_coding	protein_coding	protein_coding	4	50	2	2.06898	2.3843249999999996	2.69967	0.0195838	0.0137491	0.109483	0.10247
chr1	179960819	179960918	267496	0	+	0.373737	(0.35,0.378]	chr1	31297	53	INTRON	INTRON	CEP350	ENSG00000135837.16	ENST00000491495.2:ENST00000367607.8	protein_coding	protein_coding	protein_coding	protein_coding	3	45	2	2.04358	2.3842749999999997	2.72497	0.0329533	0.0198266	0.145171	0.109608
chr10	68456216	68456315	4639610	0	-	0.363636	(0.35,0.378]	chr10	426710	56	INTRON	INTRON	DNA2	ENSG00000138346.15	ENST00000358410.8:ENST00000551118.6:ENST00000399179.6:ENST00000399180.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	45	2	2.04358	2.3842749999999997	2.72497	0.0329533	0.0198266	0.145171	0.109608
chr3	20067638	20067738	1376699	0	+	0.37	(0.35,0.378]	chr3	145087	265	INTRON	INTRON	KAT2B	ENSG00000114166.8	ENST00000263754.5:ENST00000426228.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	45	2	2.04358	2.3842749999999997	2.72497	0.0329533	0.0198266	0.145171	0.109608
chr7	127708741	127708840	3402974	0	+	0.373737	(0.35,0.378]	chr7	318124	7	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8	protein_coding	protein_coding	protein_coding	protein_coding	3	45	2	2.04358	2.3842749999999997	2.72497	0.0329533	0.0198266	0.145171	0.109608
chr1	29001603	29001703	59832	0	+	0.34	(0.32,0.35]	chr1	7649	39	INTRON	INTRON	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000647918.1:ENST00000646800.1:ENST00000644342.1:ENST00000646189.1:ENST00000482464.6:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000646260.1:ENST00000373798.5:ENST00000644600.1:ENST00000649674.1:ENST00000643173.1:ENST00000343067.9:ENST00000644780.1:ENST00000650265.1:ENST00000648181.1:ENST00000643604.1:ENST00000648891.1:ENST00000373797.2:ENST00000349460.9:ENST00000645184.1:ENST00000645111.1:ENST00000643302.1:ENST00000645999.1:ENST00000642643.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	65	2	2.18092	2.384225	2.58753	0.0256608	0.00560122	0.120491	0.0678837
chr10	124412300	124412400	4710773	0	-	0.45	(0.44,0.476]	chr10	434735	1	SS3_PROX	SS3_PROX:INTRON	OAT	ENSG00000065154.12	ENST00000539214.5:ENST00000368845.6:ENST00000476917.5:ENST00000490096.5:ENST00000492376.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	57	2	1.9039	2.38421	2.86452	0.0501498	0.00159222	0.156383	0.0367961
chr15	52034264	52034364	6029173	0	+	0.44	(0.408,0.44]	chr15	574427	60	INTRON	INTRON	MAPK6	ENSG00000069956.14	ENST00000560802.1:ENST00000691380.1:ENST00000558063.5:ENST00000560254.1:ENST00000681888.1:ENST00000261845.7:ENST00000680066.1:ENST00000680777.1:ENST00000558100.1:ENST00000680652.1:ENST00000558841.1:ENST00000558891.1:ENST00000560774.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	130	2	2.26252	2.3841900000000003	2.50586	0.00399285	2.85208e-4	0.0550622	0.0150568
chr14	31006454	31006554	5857674	0	-	0.49	(0.476,0.515]	chr14	556508	421	INTRON	INTRON	STRN3	ENSG00000196792.12	ENST00000355683.9:ENST00000357479.10:ENST00000555358.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	67	2	2.31726	2.3841650000000003	2.45107	0.015077	0.00301722	0.0994339	0.0507519
chr17	42476338	42476438	6611466	0	+	0.38	(0.378,0.408]	chr17	644092	50	INTRON	INTRON	ATP6V0A1	ENSG00000033627.17	ENST00000393829.6:ENST00000343619.9:ENST00000537728.5:ENST00000588901.5:ENST00000264649.10:ENST00000585525.5:ENST00000544137.5:ENST00000589727.5:ENST00000592324.1:ENST00000587375.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	70	2	2.06535	2.3841650000000003	2.70298	0.0159849	0.00325723	0.101453	0.0524329
chr5	65576378	65576478	2368766	0	+	0.51	(0.476,0.515]	chr5	228251	1	SS3_PROX	SS3_PROX:INTRON	PPWD1	ENSG00000113593.12	ENST00000535264.5:ENST00000538977.5:ENST00000261308.10:ENST00000510930.5:ENST00000511908.5:ENST00000507608.1:ENST00000514172.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	67	2	2.31726	2.3841650000000003	2.45107	0.015077	0.00301722	0.0994339	0.0507519
chr16	47517199	47517299	6343864	0	+	0.32	(0.28,0.32]	chr16	608879	12	INTRON	INTRON	PHKB	ENSG00000102893.17	ENST00000566037.6:ENST00000566044.5:ENST00000299167.12:ENST00000696809.1:ENST00000323584.10:ENST00000565424.2:ENST00000567402.5:ENST00000570047.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	88	2	2.09794	2.384155	2.67037	0.0340483	0.00141946	0.134863	0.034662
chr7	132961024	132961124	3644673	0	-	0.47	(0.44,0.476]	chr7	338848	737	INTRON	INTRON	CHCHD3	ENSG00000106554.13	ENST00000262570.10:ENST00000448878.6:ENST00000496427.5:ENST00000423635.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	92	2	2.03286	2.384155	2.73545	0.00977911	7.908e-4	0.0835427	0.0258324
chr17	78217775	78217874	6682207	0	+	0.525253	(0.515,0.57]	chr17	652756	6	INTRON	INTRON	BIRC5	ENSG00000089685.15	ENST00000301633.8:ENST00000350051.8:ENST00000590925.6:ENST00000374948.6:ENST00000592734.5:ENST00000592115.5:ENST00000586192.5:ENST00000587746.5:ENST00000591800.1:ENST00000589892.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	43	2	2.00468	2.3841099999999997	2.76354	0.0166344	0.0147344	0.110511	0.0983813
chr1	52442705	52442804	457431	0	-	0.262626	[0,0.28]	chr1	54961	40	INTRON	INTRON	TUT4	ENSG00000134744.14	ENST00000371544.7:ENST00000257177.9:ENST00000531722.5:ENST00000474453.6:ENST00000469810.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	44	2	2.33055	2.38408	2.43761	0.062338	0.0423864	0.175343	0.161744
chr11	3363982	3364081	4893695	0	-	0.262626	[0,0.28]	chr11	458671	15	EXON_MRNA	EXON_MRNA:INTRON	ZNF195	ENSG00000005801.18	ENST00000528796.5:ENST00000399602.9:ENST00000354599.10:ENST00000343338.11:ENST00000620374.4:ENST00000649622.1:ENST00000429541.6:ENST00000005082.13:ENST00000526601.5:ENST00000438262.6:ENST00000528410.5:ENST00000528218.5:ENST00000529789.5:ENST00000525313.6:ENST00000533036.5:ENST00000529228.5:ENST00000529678.5:ENST00000528636.1:ENST00000427810.6:ENST00000534569.5:ENST00000524857.5:ENST00000530643.5:ENST00000618467.4:ENST00000330692.11	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	44	2	2.33055	2.38408	2.43761	0.062338	0.0423864	0.175343	0.161744
chr15	34962765	34962862	6135105	0	-	0.206186	[0,0.28]	chr15	584619	16	INTRON	INTRON	AQR	ENSG00000021776.11	ENST00000156471.10:ENST00000543879.6:ENST00000560117.1:ENST00000558202.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	44	2	2.33055	2.38408	2.43761	0.062338	0.0423864	0.175343	0.161744
chr2	174095636	174095736	1269319	0	-	0.24	[0,0.28]	chr2	134263	132	INTRON	INTRON	OLA1	ENSG00000138430.16	ENST00000284719.8:ENST00000344357.9:ENST00000428402.6:ENST00000409546.5:ENST00000392560.6:ENST00000462000.1:ENST00000429575.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	44	2	2.33055	2.38408	2.43761	0.062338	0.0423864	0.175343	0.161744
chr5	138468457	138468551	2495854	0	+	0.446809	(0.44,0.476]	chr5	238660	5	UTR3	UTR3:EXON_MRNA	EGR1	ENSG00000120738.8	ENST00000239938.5	protein_coding	protein_coding	protein_coding	protein_coding	6	83	2	2.1762	2.3840250000000003	2.59185	0.0092251	0.00200767	0.0855292	0.0408395
chr3	9806608	9806707	1361067	0	+	0.535354	(0.515,0.57]	chr3	143127	5	UTR3	UTR3:EXON_MRNA:INTRON	ARPC4-TTLL3:ARPC4	ENSG00000250151.9:ENSG00000241553.13	ENST00000424442.5:ENST00000418163.5:ENST00000397261.8:ENST00000397256.5:ENST00000453882.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	18	202	2	1.9377	2.384	2.8303	0.001519	1.58067e-5	0.0360297	0.00318411
chr5	138566425	138566525	2732814	0	-	0.34	(0.32,0.35]	chr5	257457	4	SS5_PROX	SS5_PROX:INTRON	HSPA9	ENSG00000113013.16	ENST00000677693.1:ENST00000677064.1:ENST00000678300.1:ENST00000677425.1:ENST00000649578.2:ENST00000677988.1:ENST00000297185.9:ENST00000677527.1:ENST00000678794.1:ENST00000677553.1:ENST00000678384.1:ENST00000678051.1:ENST00000677066.1:ENST00000649692.2:ENST00000678551.1:ENST00000501917.7:ENST00000524109.2:ENST00000507115.6:ENST00000507097.5:ENST00000504902.6:ENST00000508003.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	122	2	2.27939	2.383975	2.48856	0.00844518	6.8257e-4	0.0776969	0.023782
chr1	52168478	52168578	101872	0	+	0.5	(0.476,0.515]	chr1	13461	257	INTRON	INTRON	ZFYVE9	ENSG00000157077.16	ENST00000287727.8:ENST00000371591.2:ENST00000357206.6:ENST00000361625.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	31	2	2.28264	2.383955	2.48527	0.0534132	0.03496	0.179876	0.13747500000000001
chr10	67976773	67976873	4636938	0	-	0.5	(0.476,0.515]	chr10	426348	96	INTRON	INTRON	HERC4	ENSG00000148634.16	ENST00000277817.10:ENST00000373700.9:ENST00000412272.6:ENST00000395198.7:ENST00000473533.6:ENST00000427635.6:ENST00000460168.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	31	2	2.28264	2.383955	2.48527	0.0534132	0.03496	0.179876	0.13747500000000001
chr15	74898528	74898627	6063545	0	+	0.50505	(0.476,0.515]	chr15	577402	9	UTR3	UTR3:EXON_MRNA	MPI	ENSG00000178802.18	ENST00000566377.5:ENST00000352410.9	protein_coding	protein_coding	protein_coding	protein_coding	2	31	2	2.28264	2.383955	2.48527	0.0534132	0.03496	0.179876	0.13747500000000001
chr3	47437221	47437320	1682468	0	-	0.50505	(0.476,0.515]	chr3	171868	17	INTRON	INTRON	SCAP	ENSG00000114650.21	ENST00000265565.10:ENST00000441517.6:ENST00000320017.10:ENST00000648151.1:ENST00000416208.5:ENST00000416847.5:ENST00000495603.2:ENST00000420588.5:ENST00000485967.1:ENST00000448217.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	31	2	2.28264	2.383955	2.48527	0.0534132	0.03496	0.179876	0.13747500000000001
chr7	128544027	128544127	3407484	0	+	0.5	(0.476,0.515]	chr7	318333	99	INTRON	INTRON	ENSG00000280828	ENSG00000280828.1	ENST00000479267.2	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	2	31	2	2.28264	2.383955	2.48527	0.0534132	0.03496	0.179876	0.13747500000000001
chr8	85219548	85219634	3980204	0	-	0.5	(0.476,0.515]	chr8	364738	2	SS3_PROX	SS3_PROX:INTRON	RBIS	ENSG00000176731.12	ENST00000619594.5:ENST00000614462.4:ENST00000612977.4:ENST00000545322.5:ENST00000612809.4:ENST00000615697.4:ENST00000523245.1:ENST00000321777.5:ENST00000518786.1:ENST00000521286.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	31	2	2.28264	2.383955	2.48527	0.0534132	0.03496	0.179876	0.13747500000000001
chr9	96916549	96916648	4298012	0	-	0.515152	(0.476,0.515]	chr9	395221	131	INTRON	INTRON	MFSD14C	ENSG00000196312.15	ENST00000647176.1:ENST00000637409.1:ENST00000506067.1:ENST00000645073.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	2	31	2	2.28264	2.383955	2.48527	0.0534132	0.03496	0.179876	0.13747500000000001
chr13	19729538	19729638	5552406	0	-	0.27	[0,0.28]	chr13	530696	196	INTRON	INTRON	PSPC1	ENSG00000121390.19	ENST00000471658.5:ENST00000492741.5:ENST00000635562.1:ENST00000338910.9:ENST00000619300.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	112	2	2.14475	2.3839449999999998	2.62314	0.00823246	0.00723874	0.0772885	0.0756327
chr6	34386863	34386963	3084716	0	-	0.48	(0.476,0.515]	chr6	288633	445	INTRON	INTRON	NUDT3:RPS10-NUDT3	ENSG00000272325.2:ENSG00000270800.3	ENST00000607016.2:ENST00000639725.1:ENST00000639877.1:ENST00000605528.2	protein_coding	protein_coding	protein_coding	protein_coding	4	50	2	1.61586	2.38394	3.15202	0.0567093	0.00455841	0.185107	0.0595107
chr1	145996344	145996422	541121	0	-	0.205128	[0,0.28]	chr1	63491	2	UTR5	UTR5:EXON_MRNA	TXNIP	ENSG00000265972.6	ENST00000582401.6	protein_coding	protein_coding	protein_coding	protein_coding	41	764	2	2.20354	2.38392	2.5643	0.00113525	2.13463e-5	0.0307488	0.00357759
chr10	125099887	125099987	4713729	0	-	0.48	(0.476,0.515]	chr10	434903	112	INTRON	INTRON	CTBP2	ENSG00000175029.17	ENST00000337195.9:ENST00000411419.6:ENST00000494626.6:ENST00000531469.5:ENST00000460976.5:ENST00000476817.1:ENST00000530884.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	102	2	1.98495	2.38388	2.78281	0.00740375	6.29551e-4	0.0743293	0.0226349
chr6	159687425	159687525	3253811	0	-	0.46	(0.44,0.476]	chr6	302447	20	INTRON	INTRON	SOD2	ENSG00000112096.19	ENST00000538183.7:ENST00000546260.5:ENST00000367055.8:ENST00000367054.6:ENST00000546087.5:ENST00000444946.6:ENST00000337404.8:ENST00000535459.5:ENST00000541573.5:ENST00000540491.1:ENST00000545162.5:ENST00000535561.5:ENST00000537657.5:ENST00000401980.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	46	2	2.29425	2.38382	2.47339	0.0518406	0.0090196	0.176696	0.080367
chr1	162507030	162507130	238086	0	+	0.32	(0.28,0.32]	chr1	28666	28	INTRON	INTRON	UHMK1	ENSG00000152332.16	ENST00000545294.5:ENST00000538489.5:ENST00000489294.2:ENST00000282169.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	72	2	1.64429	2.383805	3.12332	0.0365539	0.00698537	0.153932	0.0718189
chrX	114030069	114030169	7868341	0	-	0.42	(0.408,0.44]	chrX	801551	382	INTRON	INTRON	XACT	ENSG00000241743.4	ENST00000468762.3:ENST00000649506.1	lncRNA	lncRNA	lncRNA	lncRNA	5	58	2	1.40374	2.38376	3.36378	0.0721345	0.0016048	0.187433	0.0367961
chr12	31321153	31321252	5302806	0	-	0.30303	(0.28,0.32]	chr12	504668	157	INTRON	INTRON	SINHCAF	ENSG00000139146.14	ENST00000337682.9:ENST00000539409.5:ENST00000454658.6:ENST00000542983.1:ENST00000539004.5:ENST00000543615.1:ENST00000536836.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	75	2	2.08149	2.383755	2.68602	0.031124	0.0055712	0.143644	0.0649112
chr7	158773140	158773240	3689243	0	-	0.62	(0.57,1]	chr7	342388	4	SS5_PROX	SS5_PROX:INTRON	ESYT2	ENSG00000117868.18	ENST00000251527.10:ENST00000275418.13:ENST00000652148.1	protein_coding	protein_coding	protein_coding	protein_coding	7	46	2	2.26008	2.38375	2.50742	0.00631173	0.0014773	0.0687526	0.0353237
chr7	32872157	32872254	3515424	0	-	0.412371	(0.408,0.44]	chr7	327768	9	INTRON	INTRON	KBTBD2	ENSG00000170852.12	ENST00000304056.9:ENST00000485611.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	81	2	2.15938	2.383615	2.60785	0.011260300000000001	0.00146754	0.0884004	0.035104
chr15	28318528	28318628	6124031	0	-	0.55	(0.515,0.57]	chr15	583407	187	INTRON	INTRON	HERC2	ENSG00000128731.18	ENST00000261609.13:ENST00000564734.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	69	2	2.36534	2.38356	2.40178	0.00404547	0.00382306	0.0578376	0.0542786
chr11	61303655	61303750	4956181	0	-	0.4	(0.378,0.408]	chr11	465672	1	SS5_PROX	SS5_PROX:INTRON	DDB1	ENSG00000167986.15	ENST00000301764.12:ENST00000680367.1:ENST00000681803.1:ENST00000680717.1:ENST00000679712.1:ENST00000680357.1:ENST00000680075.1:ENST00000679588.1:ENST00000680602.1:ENST00000680881.1:ENST00000681188.1:ENST00000535283.6:ENST00000680452.1:ENST00000681935.1:ENST00000680250.1:ENST00000680959.1:ENST00000540166.5:ENST00000679855.1:ENST00000539332.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	16	212	2	2.10047	2.383535	2.6666	0.00149492	6.90975e-5	0.0350924	0.00688956
chr1	32654644	32654743	65863	0	+	0.353535	(0.35,0.378]	chr1	8416	22	INTRON	INTRON	RBBP4	ENSG00000162521.19	ENST00000414241.7:ENST00000527118.5:ENST00000373493.10:ENST00000401893.7:ENST00000524393.5:ENST00000492348.6:ENST00000526193.5:ENST00000525506.1:ENST00000373485.5:ENST00000477563.6:ENST00000458695.6:ENST00000490500.5:ENST00000445722.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	94	2	1.74668	2.383475	3.02027	0.0198631	8.40802e-4	0.109608	0.0263691
chr11	57780004	57780104	4793313	0	+	0.34	(0.32,0.35]	chr11	443717	155	INTRON	INTRON	ENSG00000288534:CTNND1	ENSG00000288534.1:ENSG00000198561.16	ENST00000673781.1:ENST00000673810.1:ENST00000674116.1:ENST00000674060.1:ENST00000524630.5:ENST00000529919.5:ENST00000533189.1:ENST00000682741.1:ENST00000358694.10:ENST00000361332.8:ENST00000361391.10:ENST00000361796.9:ENST00000415361.6:ENST00000426142.6:ENST00000428599.6:ENST00000525902.5:ENST00000526357.5:ENST00000526772.5:ENST00000527467.5:ENST00000528232.5:ENST00000528621.5:ENST00000529526.5:ENST00000529873.5:ENST00000529986.5:ENST00000530094.5:ENST00000530748.5:ENST00000531014.5:ENST00000532245.5:ENST00000532463.5:ENST00000532649.5:ENST00000532787.5:ENST00000532844.5:ENST00000533667.5:ENST00000534579.5:ENST00000399050.10:ENST00000526938.5:ENST00000531007.2:ENST00000674015.1:ENST00000673826.1:ENST00000673683.1:ENST00000674106.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	131	2	2.13598	2.38338	2.63078	0.00241817	0.00218887	0.0454275	0.0417893
chr11	117168879	117168978	4869343	0	+	0.444444	(0.44,0.476]	chr11	454464	13	UTR3	UTR3:EXON_MRNA:INTRON	PAFAH1B2	ENSG00000168092.14	ENST00000419197.6:ENST00000527958.6:ENST00000529887.6:ENST00000526888.1:ENST00000530272.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	173	2	2.0432	2.38337	2.72354	0.00226364	1.32708e-4	0.0437013	0.0104894
chr10	70169812	70169912	4640888	0	-	0.48	(0.476,0.515]	chr10	426918	19	INTRON	INTRON	SAR1A	ENSG00000079332.15	ENST00000373242.6:ENST00000373241.9:ENST00000373239.2	protein_coding	protein_coding	protein_coding	protein_coding	9	112	2	1.59633	2.3833200000000003	3.17031	0.0233044	7.50511e-5	0.118272	0.007252
chr1	26944321	26944416	52987	0	+	0.484211	(0.476,0.515]	chr1	6778	9	INTRON	INTRON	NUDC	ENSG00000090273.14	ENST00000321265.10	protein_coding	protein_coding	protein_coding	protein_coding	5	68	2	2.28112	2.383315	2.48551	0.00756632	0.00700958	0.0773151	0.0718189
chr22	20485500	20485600	7557419	0	-	0.51	(0.476,0.515]	chr22	772796	10	INTRON	INTRON	KLHL22	ENSG00000099910.17	ENST00000328879.9:ENST00000479601.5:ENST00000451553.1:ENST00000444967.5:ENST00000458248.5:ENST00000443285.5:ENST00000494929.5:ENST00000431430.1:ENST00000470335.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	68	2	2.28112	2.383315	2.48551	0.00756632	0.00700958	0.0773151	0.0718189
chr3	42620501	42620594	1406175	0	+	0.333333	(0.32,0.35]	chr3	147670	3	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	NKTR	ENSG00000114857.19	ENST00000468735.6:ENST00000487466.5:ENST00000429888.5:ENST00000232978.13:ENST00000478488.1:ENST00000465584.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	15	226	2	2.07034	2.3832649999999997	2.69619	0.00271279	7.74113e-5	0.0467523	0.00735438
chr1	150576566	150576665	551055	0	-	0.313131	(0.28,0.32]	chr1	64761	25	UTR3	UTR3:EXON_MRNA:INTRON	MCL1	ENSG00000143384.14	ENST00000678770.1:ENST00000678610.1:ENST00000464132.2:ENST00000620947.4:ENST00000369026.3:ENST00000676522.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	31	505	2	2.1548	2.383215	2.61163	7.64297e-4	2.29885e-5	0.0253443	0.00374048
chr5	73057080	73057174	2389193	0	+	0.393617	(0.378,0.408]	chr5	230602	6	INTRON	INTRON	FCHO2	ENSG00000157107.14	ENST00000430046.7:ENST00000512348.5	protein_coding	protein_coding	protein_coding	protein_coding	7	96	2	2.256	2.383215	2.51043	0.00336115	0.00304007	0.0532154	0.0493883
chr7	129624690	129624790	3412251	0	+	0.51	(0.476,0.515]	chr7	319009	125	INTRON	INTRON	NRF1	ENSG00000106459.15	ENST00000393232.6:ENST00000477428.5:ENST00000454688.5:ENST00000223190.8:ENST00000311967.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	80	2	2.31529	2.3831800000000003	2.45107	0.00614783	0.00301722	0.0676501	0.0507519
chr1	47334616	47334715	97582	0	+	0.656566	(0.57,1]	chr1	13138	1	INTRON	INTRON	CMPK1	ENSG00000162368.14	ENST00000371873.10:ENST00000371871.8:ENST00000471289.2:ENST00000450808.2:ENST00000371870.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	42	2	2.23972	2.383025	2.52633	0.00670296	0.0018535	0.0707084	0.039946
chr6	119186707	119186807	3204178	0	-	0.62	(0.57,1]	chr6	298272	59	INTRON	INTRON	MAN1A1	ENSG00000111885.7	ENST00000368468.4	protein_coding	protein_coding	protein_coding	protein_coding	6	42	2	2.23972	2.383025	2.52633	0.00670296	0.0018535	0.0707084	0.039946
chr5	62322066	62322166	2362191	0	+	0.52	(0.515,0.57]	chr5	227725	98	INTRON	INTRON	KIF2A	ENSG00000068796.19	ENST00000401507.7:ENST00000407818.8:ENST00000674632.1:ENST00000674916.1:ENST00000676413.1:ENST00000676122.1:ENST00000674751.1:ENST00000514082.6:ENST00000675085.1:ENST00000504883.2:ENST00000381103.7:ENST00000676271.1:ENST00000512541.5:ENST00000674733.1:ENST00000506857.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	36	2	1.7074	2.382895	3.05839	0.0779432	0.00485936	0.196685	0.0640618
chr16	58623809	58623909	6496324	0	-	0.48	(0.476,0.515]	chr16	628644	4	SS3_PROX	SS3_PROX:INTRON	CNOT1	ENSG00000125107.19	ENST00000317147.10:ENST00000569240.5:ENST00000567188.5:ENST00000441024.6:ENST00000565605.5:ENST00000564557.1:ENST00000569916.1:ENST00000565697.1:ENST00000569020.5:ENST00000568158.1:ENST00000569263.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	58	2	1.63187	2.38288	3.13389	0.037661	0.00405473	0.14058	0.0578376
chr7	119890604	119890704	3630247	0	-	0.53	(0.515,0.57]	chr7	337335	894	INTRON	INTRON	LINC02476	ENSG00000225546.6	ENST00000660268.1:ENST00000431071.5:ENST00000426413.2	lncRNA	lncRNA	lncRNA	lncRNA	5	50	2	1.63907	2.38285	3.12663	0.0350277	0.00374498	0.137535	0.0562234
chr10	5803198	5803298	4544817	0	-	0.49	(0.476,0.515]	chr10	419801	21	INTRON	INTRON	GDI2	ENSG00000057608.17	ENST00000380191.9:ENST00000380181.7:ENST00000456041.5:ENST00000418688.5:ENST00000608581.5:ENST00000380127.5:ENST00000609712.1	protein_coding	protein_coding	protein_coding	protein_coding	4	50	2	1.69138	2.3828	3.07422	0.0481165	0.00506023	0.153019	0.0646039
chr10	12023757	12023856	4557590	0	-	0.484848	(0.476,0.515]	chr10	420618	92	INTRON	INTRON	UPF2	ENSG00000151461.20	ENST00000357604.10:ENST00000356352.6:ENST00000397053.6	protein_coding	protein_coding	protein_coding	protein_coding	4	50	2	1.69138	2.3828	3.07422	0.0481165	0.00506023	0.153019	0.0646039
chr2	171145051	171145151	1263941	0	-	0.51	(0.476,0.515]	chr2	133921	268	INTRON	INTRON	TLK1	ENSG00000198586.14	ENST00000431350.7:ENST00000360843.7:ENST00000359766.7:ENST00000521943.5:ENST00000409443.6:ENST00000413010.5:ENST00000470340.1:ENST00000466220.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	50	2	1.69138	2.3828	3.07422	0.0481165	0.00506023	0.153019	0.0646039
chr12	119783320	119783418	5431319	0	-	0.326531	(0.32,0.35]	chr12	518952	8	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	CIT	ENSG00000122966.17	ENST00000392521.7:ENST00000261833.11:ENST00000677438.1:ENST00000677993.1:ENST00000678087.1:ENST00000678652.1:ENST00000676849.1:ENST00000678677.1:ENST00000545913.6:ENST00000679249.1:ENST00000679120.1:ENST00000677812.1:ENST00000677849.1:ENST00000678494.1:ENST00000612548.4:ENST00000392520.2:ENST00000537607.5:ENST00000676833.1:ENST00000536325.1:ENST00000677927.1:ENST00000676563.1:ENST00000678686.1:ENST00000488203.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	67	2	1.45026	2.3827949999999998	3.31533	0.0622478	0.00323121	0.194723	0.0507087
chr2	15523545	15523645	1072784	0	-	0.46	(0.44,0.476]	chr2	114441	118	INTRON	INTRON	NBAS	ENSG00000151779.13	ENST00000281513.10	protein_coding	protein_coding	protein_coding	protein_coding	19	217	2	2.07887	2.382785	2.6867	3.87776e-4	2.82851e-4	0.0177751	0.015495
chr2	70210038	70210137	1152054	0	-	0.313131	(0.28,0.32]	chr2	123027	7	UTR3	UTR3:EXON_MRNA:INTRON	C2orf42:TIA1	ENSG00000115998.8:ENSG00000116001.17	ENST00000470096.1:ENST00000415783.6:ENST00000433529.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	53	2	1.96376	2.382665	2.80157	0.0480066	0.0147132	0.153019	0.106558
chr7	139386629	139386728	3437863	0	+	0.535354	(0.515,0.57]	chr7	320340	101	INTRON	INTRON	LUC7L2:FMC1-LUC7L2	ENSG00000146963.18:ENSG00000269955.2	ENST00000541170.7:ENST00000541515.3:ENST00000608368.5:ENST00000619796.4:ENST00000354926.9:ENST00000456182.5:ENST00000263545.7:ENST00000463912.5:ENST00000498518.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	56	2	1.86218	2.382645	2.90311	0.0100169	0.0094233	0.0880217	0.0817766
chr11	16746802	16746902	4747264	0	+	0.48	(0.476,0.515]	chr11	439397	2	EXON_MRNA	EXON_MRNA:INTRON	C11orf58	ENSG00000110696.10	ENST00000527893.5:ENST00000524439.5:ENST00000228136.9:ENST00000525684.1:ENST00000528634.5:ENST00000525256.1:ENST00000525106.1:ENST00000524461.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	41	2	2.13304	2.38236	2.63168	0.024866	0.0237106	0.132101	0.118716
chr12	110399839	110399939	5409160	0	-	0.51	(0.476,0.515]	chr12	516463	30	INTRON	INTRON	ANAPC7:ENSG00000258210	ENSG00000196510.14:ENSG00000258210.1	ENST00000455511.9:ENST00000450008.3:ENST00000552170.2:ENST00000550231.1:ENST00000464697.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay	3	41	2	2.13304	2.38236	2.63168	0.024866	0.0237106	0.132101	0.118716
chr15	30662026	30662125	5992641	0	+	0.484848	(0.476,0.515]	chr15	569767	28	INTRON	INTRON	ENSG00000284906:ENSG00000285035:ENSG00000187951	ENSG00000284906.3:ENSG00000285035.2:ENSG00000187951.11	ENST00000685924.1:ENST00000563110.6:ENST00000566548.5:ENST00000602616.6:ENST00000562954.1	protein_coding	protein_coding	protein_coding:lncRNA:transcribed_unprocessed_pseudogene	protein_coding:nonsense_mediated_decay:lncRNA:processed_transcript	3	41	2	2.13304	2.38236	2.63168	0.024866	0.0237106	0.132101	0.118716
chr15	92891104	92891204	6103590	0	+	0.38	(0.378,0.408]	chr15	581369	24	INTRON	INTRON	CHASERR:ENSG00000279765	ENSG00000272888.8:ENSG00000279765.3	ENST00000653163.1:ENST00000557682.6:ENST00000556895.5:ENST00000554894.5:ENST00000629685.2:ENST00000554133.5:ENST00000630790.1:ENST00000555520.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	26	297	2	2.03671	2.3823	2.72789	2.67496e-4	1.51521e-4	0.014513	0.0112706
chr1	35278564	35278664	68386	0	+	0.5	(0.476,0.515]	chr1	8717	91	INTRON	INTRON	ZMYM4	ENSG00000146463.12	ENST00000314607.11:ENST00000441447.1	protein_coding	protein_coding	protein_coding	protein_coding	3	41	2	2.06491	2.38229	2.69967	0.0304733	0.0195838	0.143385	0.109483
chr1	179212649	179212749	592909	0	-	0.5	(0.476,0.515]	chr1	71074	697	INTRON	INTRON	ABL2	ENSG00000143322.21	ENST00000502732.6:ENST00000367623.8:ENST00000507173.5:ENST00000511413.5:ENST00000668691.1:ENST00000392043.4:ENST00000660584.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	41	2	2.06491	2.38229	2.69967	0.0304733	0.0195838	0.143385	0.109483
chr1	229536774	229536873	653547	0	-	0.515152	(0.476,0.515]	chr1	77458	17	INTRON	INTRON	ABCB10	ENSG00000135776.5	ENST00000344517.5	protein_coding	protein_coding	protein_coding	protein_coding	3	41	2	2.06491	2.38229	2.69967	0.0304733	0.0195838	0.143385	0.109483
chr22	42636154	42636242	7595254	0	-	0.488636	(0.476,0.515]	chr22	777942	3	SS5_PROX	SS5_PROX:INTRON	CYB5R3	ENSG00000100243.22	ENST00000693367.1:ENST00000352397.10:ENST00000361740.9:ENST00000688117.1:ENST00000692152.1:ENST00000693363.1:ENST00000689795.1:ENST00000686523.1:ENST00000407332.6:ENST00000687198.1:ENST00000689001.1:ENST00000687183.1:ENST00000691295.1:ENST00000407623.8:ENST00000402438.6:ENST00000690835.1:ENST00000689195.1:ENST00000688244.1:ENST00000690993.1:ENST00000689239.1:ENST00000692344.1:ENST00000693639.1:ENST00000693646.1:ENST00000691918.1:ENST00000438270.2:ENST00000686129.1:ENST00000693157.1:ENST00000466276.2:ENST00000693716.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	41	2	2.06491	2.38229	2.69967	0.0304733	0.0195838	0.143385	0.109483
chr3	138739675	138739775	1830542	0	-	0.49	(0.476,0.515]	chr3	184029	14	INTRON	INTRON	PIK3CB	ENSG00000051382.9	ENST00000674063.1:ENST00000289153.6:ENST00000477593.5:ENST00000462898.5:ENST00000462294.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	41	2	2.06491	2.38229	2.69967	0.0304733	0.0195838	0.143385	0.109483
chr7	148879814	148879913	3670719	0	-	0.50505	(0.476,0.515]	chr7	340632	86	INTRON	INTRON	EZH2	ENSG00000106462.12	ENST00000683292.1:ENST00000320356.7:ENST00000492143.5:ENST00000478654.5:ENST00000350995.6:ENST00000460911.5:ENST00000683744.1:ENST00000682317.1:ENST00000682263.1:ENST00000476773.5:ENST00000483967.5:ENST00000498186.5:ENST00000483012.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	41	2	2.06491	2.38229	2.69967	0.0304733	0.0195838	0.143385	0.109483
chr8	70398215	70398315	3966778	0	-	0.5	(0.476,0.515]	chr8	363897	1011	INTRON	INTRON	NCOA2	ENSG00000140396.13	ENST00000452400.7:ENST00000518287.6:ENST00000520416.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	41	2	2.06491	2.38229	2.69967	0.0304733	0.0195838	0.143385	0.109483
chr13	49207593	49207693	5489342	0	+	0.3	(0.28,0.32]	chr13	525756	3	UTR3	UTR3:EXON_MRNA	FNDC3A	ENSG00000102531.16	ENST00000492622.6:ENST00000541916.5:ENST00000484074.5:ENST00000398316.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	72	2	1.76061	2.38228	3.00395	0.0253826	0.0101329	0.133676	0.0850389
chr7	130073607	130073707	3413625	0	+	0.4	(0.378,0.408]	chr7	319098	24	INTRON	INTRON	KLHDC10	ENSG00000128607.14	ENST00000335420.10:ENST00000463413.1:ENST00000468226.1	protein_coding	protein_coding	protein_coding	protein_coding	10	125	2	1.93616	2.382235	2.82831	0.00388841	7.49551e-4	0.0567949	0.0251179
chr3	5129682	5129782	1353649	0	+	0.47	(0.44,0.476]	chr3	142361	7	INTRON	INTRON	ARL8B	ENSG00000134108.14	ENST00000429403.5:ENST00000256496.8:ENST00000455168.5:ENST00000444332.1:ENST00000419534.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	117	2	2.26085	2.38218	2.50351	0.0039479	5.11411e-4	0.0548259	0.0203232
chr17	29398961	29399060	6585721	0	+	0.414141	(0.408,0.44]	chr17	640373	76	INTRON	INTRON	ENSG00000266111:TAOK1	ENSG00000266111.2:ENSG00000160551.12	ENST00000584958.2:ENST00000261716.8:ENST00000583121.5:ENST00000587277.1:ENST00000536202.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	4	50	2	1.9831	2.38216	2.78122	0.018491	0.015812	0.116694	0.101453
chr13	25305428	25305526	5457202	0	+	0.530612	(0.515,0.57]	chr13	522871	19	INTRON	INTRON	NUP58	ENSG00000139496.17	ENST00000481980.2:ENST00000490231.6:ENST00000695571.1:ENST00000477876.2:ENST00000695572.1:ENST00000463407.6:ENST00000695573.1:ENST00000381736.8:ENST00000695583.1:ENST00000465068.5:ENST00000460326.5:ENST00000480187.5:ENST00000466694.6:ENST00000381718.8:ENST00000695575.1:ENST00000695574.1:ENST00000495460.2:ENST00000381747.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	36	2	2.32836	2.3821250000000003	2.43589	0.0370871	0.0126662	0.139194	0.0982897
chr16	18558954	18559054	6456548	0	-	0.52	(0.515,0.57]	chr16	622499	1	SS3_PROX	SS3_PROX:INTRON	NOMO2	ENSG00000185164.15	ENST00000330537.10:ENST00000381474.7:ENST00000564991.5:ENST00000621364.4:ENST00000622306.5:ENST00000543392.5:ENST00000562312.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	36	2	2.32836	2.3821250000000003	2.43589	0.0370871	0.0126662	0.139194	0.0982897
chr19	36102248	36102347	7057116	0	+	0.565657	(0.515,0.57]	chr19	704517	1	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	WDR62	ENSG00000075702.19	ENST00000401500.7:ENST00000680564.1:ENST00000680590.1:ENST00000679682.1:ENST00000679714.1:ENST00000680403.1:ENST00000679757.1:ENST00000680806.1:ENST00000679858.1:ENST00000681625.1:ENST00000587391.6:ENST00000270301.12:ENST00000680349.1:ENST00000679357.1:ENST00000680773.1:ENST00000680211.1:ENST00000680997.1:ENST00000681608.1:ENST00000680739.1:ENST00000681648.1:ENST00000680280.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	36	2	2.32836	2.3821250000000003	2.43589	0.0370871	0.0126662	0.139194	0.0982897
chr5	171388558	171388611	2546570	0	+	0.716981	(0.57,1]	chr5	243076	2	INTRON	INTRON	NPM1	ENSG00000181163.14	ENST00000517671.5:ENST00000676613.1:ENST00000678186.1:ENST00000678267.1:ENST00000677297.1:ENST00000521672.6:ENST00000679190.1:ENST00000677467.1:ENST00000678280.1:ENST00000676625.1:ENST00000679006.1:ENST00000351986.10:ENST00000676504.1:ENST00000676589.1:ENST00000677357.1:ENST00000679233.1:ENST00000296930.10:ENST00000393820.2:ENST00000521260.2:ENST00000518587.2:ENST00000678774.1:ENST00000521710.2:ENST00000523339.1:ENST00000677600.1:ENST00000677741.1:ENST00000523622.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	39	2	2.05026	2.382085	2.71391	0.0321326	6.82348e-4	0.145026	0.0239168
chr9	37212829	37212929	4118585	0	+	0.36	(0.35,0.378]	chr9	375389	259	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000461038.5:ENST00000488607.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	54	2	1.92704	2.382065	2.83709	0.0228255	0.01435	0.125469	0.0966737
chr9	128227851	128227949	4203307	0	+	0.44898	(0.44,0.476]	chr9	384064	13	INTRON	INTRON	DNM1	ENSG00000106976.21	ENST00000372923.8:ENST00000341179.11:ENST00000475805.5:ENST00000393594.7:ENST00000628346.2:ENST00000486160.3:ENST00000627543.2:ENST00000627061.2:ENST00000634267.2:ENST00000637999.1:ENST00000441149.6:ENST00000482638.6:ENST00000637317.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	19	239	2	2.09513	2.38205	2.66897	9.24085e-4	4.10414e-5	0.0278396	0.00519615
chr4	26334044	26334144	1936803	0	+	0.53	(0.515,0.57]	chr4	194354	107	INTRON	INTRON	RBPJ	ENSG00000168214.22	ENST00000512351.5:ENST00000681799.1:ENST00000681403.1:ENST00000342295.6:ENST00000512671.6:ENST00000506956.5:ENST00000345843.8:ENST00000361572.10:ENST00000514380.5:ENST00000514807.5:ENST00000348160.9:ENST00000681506.1:ENST00000509158.6:ENST00000691085.1:ENST00000692303.1:ENST00000681856.1:ENST00000513182.5:ENST00000681025.1:ENST00000681679.1:ENST00000680210.1:ENST00000355476.8:ENST00000680140.1:ENST00000511401.5:ENST00000680511.1:ENST00000510778.7:ENST00000679698.1:ENST00000679469.1:ENST00000681484.1:ENST00000505958.6:ENST00000507561.5:ENST00000514730.5:ENST00000507574.5:ENST00000514675.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	87	2	2.15429	2.382035	2.60978	0.00272344	0.00151689	0.0481781	0.0352794
chr15	88900311	88900403	6256701	0	-	0.597826	(0.57,1]	chr15	596861	1	INTRON	INTRON	MFGE8	ENSG00000140545.16	ENST00000268150.13:ENST00000558018.5:ENST00000558029.6:ENST00000695566.1:ENST00000268151.11:ENST00000566497.5:ENST00000695774.1:ENST00000560937.1:ENST00000542878.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	53	2	2.05009	2.3819999999999997	2.71391	0.00432938	6.82348e-4	0.0600206	0.0239168
chr5	136178273	136178372	2493298	0	+	0.282828	(0.28,0.32]	chr5	238185	9	UTR3	UTR3:EXON_MRNA:INTRON	SMAD5	ENSG00000113658.18	ENST00000545279.6:ENST00000545620.5:ENST00000513418.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	164	2	2.35299	2.38197	2.41095	0.00308492	9.56713e-4	0.0496985	0.0284484
chr19	38849445	38849522	7180843	0	-	0.727273	(0.57,1]	chr19	725901	2	SS5_PROX	SS5_PROX:INTRON	HNRNPL	ENSG00000104824.18	ENST00000221419.10:ENST00000388749.7:ENST00000601449.5:ENST00000600873.5:ENST00000598985.5:ENST00000601047.5:ENST00000601813.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	29	2	2.23972	2.381885	2.52405	0.0263139	0.00670296	0.133676	0.0707084
chr20	21303673	21303773	7248140	0	+	0.68	(0.57,1]	chr20	735884	2	SS5_PROX	SS5_PROX:INTRON	XRN2	ENSG00000088930.8	ENST00000377191.5	protein_coding	protein_coding	protein_coding	protein_coding	4	29	2	2.23972	2.381885	2.52405	0.0263139	0.00670296	0.133676	0.0707084
chr1	21744379	21744479	396469	0	-	0.42	(0.408,0.44]	chr1	47304	74	INTRON	INTRON	USP48	ENSG00000090686.16	ENST00000400301.5:ENST00000308271.14:ENST00000529637.5:ENST00000421625.6:ENST00000374730.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	13	168	2	2.16558	2.38187	2.59816	0.00171047	1.65762e-4	0.037419	0.0111355
chr2	131110251	131110351	864445	0	+	0.42	(0.408,0.44]	chr2	97119	18	INTRON	INTRON	PLEKHB2	ENSG00000115762.17	ENST00000403716.5:ENST00000439822.6:ENST00000409158.5:ENST00000234115.10:ENST00000628582.2:ENST00000482225.1:ENST00000693505.1:ENST00000438882.6:ENST00000404460.5:ENST00000409612.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	132	2	2.36243	2.38185	2.40127	0.00123682	0.00107664	0.0322669	0.0300133
chr4	39910936	39911035	2131527	0	-	0.525253	(0.515,0.57]	chr4	210200	2	INTRON	INTRON	PDS5A	ENSG00000121892.15	ENST00000303538.13:ENST00000503396.5:ENST00000513798.1:ENST00000512643.1:ENST00000508625.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	73	2	1.73535	2.38177	3.02819	0.0165373	7.81057e-4	0.110511	0.0257168
chr7	157143034	157143133	3453980	0	+	0.555556	(0.515,0.57]	chr7	322895	33	INTRON	INTRON	UBE3C	ENSG00000009335.18	ENST00000611269.4:ENST00000348165.10:ENST00000389103.4:ENST00000430750.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	73	2	1.73535	2.38177	3.02819	0.0165373	7.81057e-4	0.110511	0.0257168
chr4	39723044	39723144	1953241	0	+	0.47	(0.44,0.476]	chr4	195630	243	INTRON	INTRON	UBE2K	ENSG00000078140.14	ENST00000510934.5:ENST00000261427.10:ENST00000438068.6:ENST00000513231.5:ENST00000503368.5:ENST00000445950.2:ENST00000510719.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	15	192	2	2.17421	2.381755	2.5893	0.00159566	6.9003e-5	0.0364566	0.00688853
chr11	70274821	70274920	4820451	0	+	0.484848	(0.476,0.515]	chr11	449381	20	INTRON	INTRON	PPFIA1	ENSG00000131626.19	ENST00000253925.12:ENST00000389547.7:ENST00000532504.5:ENST00000530746.1:ENST00000532024.1:ENST00000648755.1:ENST00000644155.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	83	2	1.83961	2.381735	2.92386	0.0314489	3.01132e-4	0.13151	0.0155054
chr4	55397784	55397879	1960606	0	+	0.631579	(0.57,1]	chr4	196542	5	INTRON	INTRON	TMEM165	ENSG00000134851.13	ENST00000381334.10:ENST00000506198.5:ENST00000508404.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	36	2	2.23711	2.38172	2.52633	0.0172108	0.0018535	0.104099	0.039946
chr15	57990636	57990734	6186776	0	-	0.510204	(0.476,0.515]	chr15	589738	1	INTRON	INTRON	ALDH1A2	ENSG00000128918.15	ENST00000537372.5:ENST00000249750.9:ENST00000347587.7:ENST00000430119.6:ENST00000558231.5:ENST00000559517.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	79	2	1.26748	2.381675	3.49587	0.0453667	0.00120011	0.164236	0.0315806
chr4	78892371	78892471	1982568	0	+	0.3	(0.28,0.32]	chr4	198558	47	INTRON	INTRON	BMP2K	ENSG00000138756.19	ENST00000502613.3	protein_coding	protein_coding	protein_coding	protein_coding	4	66	2	1.9021	2.381615	2.86113	0.0304779	0.0122675	0.130699	0.0969406
chr12	100051874	100051973	5395891	0	-	0.525253	(0.515,0.57]	chr12	514537	1	INTRON	INTRON	UHRF1BP1L	ENSG00000111647.13	ENST00000279907.12:ENST00000545232.6	protein_coding	protein_coding	protein_coding	protein_coding	3	36	2	1.86007	2.38159	2.90311	0.0526611	0.0094233	0.178401	0.0817766
chr6	32156278	32156378	2844468	0	+	0.54	(0.515,0.57]	chr6	268233	3	SS5_PROX	SS5_PROX:INTRON	PPT2:PPT2-EGFL8	ENSG00000221988.13:ENSG00000258388.7	ENST00000361568.6:ENST00000478521.5:ENST00000395523.5:ENST00000428388.6:ENST00000585246.5:ENST00000375137.6:ENST00000375143.6:ENST00000324816.11:ENST00000424499.1:ENST00000493548.5:ENST00000422437.5:ENST00000436118.2:ENST00000453656.6:ENST00000583227.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	36	2	1.86007	2.38159	2.90311	0.0526611	0.0094233	0.178401	0.0817766
chr17	21032857	21032957	6743067	0	-	0.41	(0.408,0.44]	chr17	662067	38	INTRON	INTRON	USP22	ENSG00000124422.12	ENST00000261497.9:ENST00000537526.6:ENST00000455117.6:ENST00000579645.5:ENST00000476111.5:ENST00000584538.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	42	2	1.94273	2.3815749999999998	2.82042	0.0456237	0.0120121	0.149888	0.0962115
chr7	26200227	26200313	3506236	0	-	0.639535	(0.57,1]	chr7	327193	2	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	HNRNPA2B1	ENSG00000122566.22	ENST00000679318.1:ENST00000677339.1:ENST00000678501.1:ENST00000676903.1:ENST00000608362.2:ENST00000677631.1:ENST00000676749.1:ENST00000677574.1:ENST00000679123.1:ENST00000677906.1:ENST00000476233.2:ENST00000677669.1:ENST00000677321.1:ENST00000678277.1:ENST00000677571.1:ENST00000679124.1:ENST00000676932.1:ENST00000678973.1:ENST00000678183.1:ENST00000679021.1:ENST00000678631.1:ENST00000678998.1:ENST00000490912.6:ENST00000354667.8:ENST00000618183.5:ENST00000677839.1:ENST00000677037.1:ENST00000678449.1:ENST00000679001.1:ENST00000678962.1:ENST00000676524.1:ENST00000678935.1:ENST00000678675.1:ENST00000676746.1:ENST00000356674.8:ENST00000678431.1:ENST00000678697.1:ENST00000678779.1:ENST00000676497.1:ENST00000677396.1:ENST00000360787.8:ENST00000679243.1:ENST00000677656.1:ENST00000463181.5:ENST00000678884.1:ENST00000495810.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	62	2	1.90507	2.381545	2.85802	0.00375525	3.01883e-4	0.0562562	0.0160895
chr7	129030456	129030556	3636336	0	-	0.35	(0.32,0.35]	chr7	338142	119	INTRON	INTRON	TNPO3	ENSG00000064419.14	ENST00000627585.2:ENST00000265388.10:ENST00000471234.5:ENST00000482320.5:ENST00000471166.1	protein_coding	protein_coding	protein_coding	protein_coding	4	67	2	1.83416	2.381545	2.92893	0.0631198	0.00138	0.176946	0.0341261
chr6	107904038	107904128	3182291	0	-	0.566667	(0.515,0.57]	chr6	296406	7	INTRON	INTRON	SEC63	ENSG00000025796.14	ENST00000369002.9	protein_coding	protein_coding	protein_coding	protein_coding	7	81	2	2.06758	2.3815	2.69542	0.0140038	3.15632e-4	0.0959618	0.0159645
chr16	21499381	21499481	6461347	0	-	0.42	(0.408,0.44]	chr16	623371	114	INTRON	INTRON	SMG1P3	ENSG00000180747.15	ENST00000522480.5:ENST00000522841.6:ENST00000437413.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	8	103	2	1.85142	2.3814900000000003	2.91156	0.0127811	3.17111e-4	0.0926667	0.0159645
chr16	88718461	88718554	6539492	0	-	0.516129	(0.515,0.57]	chr16	633839	8	EXON_MRNA	EXON_MRNA:INTRON	PIEZO1	ENSG00000103335.22	ENST00000301015.14:ENST00000419505.5:ENST00000484567.6:ENST00000495568.7:ENST00000466823.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	80	2	2.35275	2.3814849999999996	2.41022	0.00332441	0.00219906	0.0528673	0.0417893
chr9	83673226	83673326	4272730	0	-	0.45	(0.44,0.476]	chr9	392953	35	INTRON	INTRON	UBQLN1	ENSG00000135018.14	ENST00000376395.9:ENST00000533705.5:ENST00000257468.11	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	63	2	1.4962	2.3814450000000003	3.26669	0.0392301	0.00305435	0.161534	0.0493883
chr15	41360739	41360838	6005060	0	+	0.393939	(0.378,0.408]	chr15	571331	21	INTRON	INTRON	NUSAP1	ENSG00000137804.14	ENST00000668273.1:ENST00000260359.10:ENST00000558123.5:ENST00000414849.6:ENST00000450592.6:ENST00000559596.6:ENST00000560747.5:ENST00000560177.5:ENST00000557840.5:ENST00000560898.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	98	2	1.67471	2.3813999999999997	3.08809	0.0185724	5.71831e-4	0.108861	0.0217398
chr16	24736577	24736677	6329282	0	+	0.4	(0.378,0.408]	chr16	605933	59	INTRON	INTRON	TNRC6A	ENSG00000090905.19	ENST00000566108.2:ENST00000395799.8:ENST00000315183.11:ENST00000562829.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	112	2	2.256	2.381375	2.50675	0.00336115	0.00144847	0.0532154	0.034341000000000003
chr2	172604469	172604569	920394	0	+	0.27	[0,0.28]	chr2	101391	86	UTR3	UTR3:EXON_MRNA	PDK1	ENSG00000152256.14	ENST00000282077.8	protein_coding	protein_coding	protein_coding	protein_coding	4	72	2	1.71402	2.381345	3.04867	0.047753	0.0104221	0.170327	0.085482
chr5	105327861	105327961	2695705	0	-	0.39	(0.378,0.408]	chr5	254248	816	INTRON	INTRON	ENSG00000251574	ENSG00000251574.8	ENST00000503650.1	lncRNA	lncRNA	lncRNA	lncRNA	10	111	2	1.75132	2.38129	3.01126	0.00695593	0.00115997	0.0754576	0.0311664
chr12	110448584	110448682	5409662	0	-	0.438776	(0.408,0.44]	chr12	516502	27	INTRON	INTRON	ARPC3	ENSG00000111229.16	ENST00000228825.12:ENST00000426440.5:ENST00000548878.6:ENST00000471641.1:ENST00000475777.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	58	2	1.44993	2.38125	3.31257	0.0638951	0.00198621	0.177824	0.0411469
chr17	63807054	63807154	6661304	0	+	0.27	[0,0.28]	chr17	649991	4	SS5_PROX	SS5_PROX:INTRON	DDX42	ENSG00000198231.14	ENST00000578681.5:ENST00000583590.5:ENST00000389924.7:ENST00000359353.9:ENST00000577940.6:ENST00000584010.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	118	2	2.15711	2.381215	2.60532	0.0161128	0.00226845	0.101453	0.0437013
chr19	1591684	1591784	7112514	0	-	0.51	(0.476,0.515]	chr19	714542	3	SS5_PROX	SS5_PROX:INTRON	MBD3:ENSG00000267059	ENSG00000071655.18:ENSG00000267059.2	ENST00000434436.8:ENST00000156825.5:ENST00000585937.1:ENST00000585967.5:ENST00000592965.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	13	171	2	2.26392	2.3811400000000003	2.49836	0.0010935	2.86238e-4	0.0302914	0.0155412
chr12	68645809	68645908	5161557	0	+	0.363636	(0.35,0.378]	chr12	488591	43	INTRON	INTRON	RAP1B	ENSG00000127314.18	ENST00000460800.5:ENST00000393436.9:ENST00000250559.14:ENST00000425247.6:ENST00000501412.2:ENST00000450214.6:ENST00000463493.5:ENST00000537460.5:ENST00000341355.9:ENST00000538283.5:ENST00000541167.5:ENST00000422358.6:ENST00000489473.6:ENST00000545270.5:ENST00000538980.5:ENST00000543393.5:ENST00000542018.5:ENST00000540209.5:ENST00000378985.7:ENST00000453560.6:ENST00000534899.5:ENST00000542145.5:ENST00000539091.5:ENST00000535492.5:ENST00000540781.5:ENST00000485252.6:ENST00000538877.5:ENST00000541386.5:ENST00000543697.5:ENST00000545720.6:ENST00000541216.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	55	2	2.15877	2.38109	2.60341	0.0275785	0.0102036	0.123904	0.089002
chrX	24754174	24754273	7632318	0	+	0.292929	(0.28,0.32]	chrX	781725	48	INTRON	INTRON	POLA1	ENSG00000101868.13	ENST00000672178.1:ENST00000379068.8:ENST00000379059.7:ENST00000611764.2:ENST00000480125.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	12	175	2	1.45371	2.381085	3.30846	0.028534	5.56432e-5	0.12666	0.0061014
chr7	151498380	151498480	3674710	0	-	0.45	(0.44,0.476]	chr7	341206	2	SS3_PROX	SS3_PROX:INTRON	RHEB	ENSG00000106615.10	ENST00000262187.10:ENST00000472642.5:ENST00000478470.5:ENST00000496004.5:ENST00000470370.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	16	162	2	1.57371	2.38104	3.18837	0.00687622	1.07866e-4	0.0749442	0.00931098
chr16	21510732	21510832	6461464	0	-	0.5	(0.476,0.515]	chr16	623383	42	INTRON	INTRON	SMG1P3	ENSG00000180747.15	ENST00000522841.6:ENST00000437413.2:ENST00000435197.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	19	233	2	2.30441	2.3810149999999997	2.45762	3.57816e-4	1.38372e-4	0.0175466	0.0101296
chr6	85537706	85537796	3150346	0	-	0.522222	(0.515,0.57]	chr6	293734	2	INTRON	INTRON	ENSG00000271793:SNX14	ENSG00000271793.2:ENSG00000135317.14	ENST00000682083.1:ENST00000683074.1:ENST00000681965.1:ENST00000682171.1:ENST00000684150.1:ENST00000683785.1:ENST00000682497.1:ENST00000684647.1:ENST00000683643.1:ENST00000682023.1:ENST00000682022.1:ENST00000683542.1:ENST00000683126.1:ENST00000683857.1:ENST00000683898.1:ENST00000682854.1:ENST00000682491.1:ENST00000682174.1:ENST00000684239.1:ENST00000682939.1:ENST00000684570.1:ENST00000682057.1:ENST00000682878.1:ENST00000683880.1:ENST00000684422.1:ENST00000682504.1:ENST00000683726.1:ENST00000684680.1:ENST00000683196.1:ENST00000683458.1:ENST00000683803.1:ENST00000684281.1:ENST00000682991.1:ENST00000683754.1:ENST00000683481.1:ENST00000682455.1:ENST00000682034.1:ENST00000684451.1:ENST00000683583.1:ENST00000682776.1:ENST00000683873.1:ENST00000683878.1:ENST00000683195.1:ENST00000682995.1:ENST00000682374.1:ENST00000683698.1:ENST00000682454.1:ENST00000682694.1:ENST00000682412.1:ENST00000682682.1:ENST00000346348.7:ENST00000314673.8:ENST00000682633.1:ENST00000683085.1:ENST00000682688.1:ENST00000684319.1:ENST00000683577.1:ENST00000682709.1:ENST00000684299.1:ENST00000682133.1:ENST00000682594.1:ENST00000683473.1:ENST00000682106.1:ENST00000683364.1:ENST00000683436.1:ENST00000684220.1:ENST00000683909.1:ENST00000684118.1:ENST00000681981.1:ENST00000682738.1:ENST00000509338.6:ENST00000684717.1:ENST00000682660.1:ENST00000683073.1:ENST00000515216.6:ENST00000684581.1:ENST00000683479.1:ENST00000682464.1:ENST00000684108.1:ENST00000682514.1:ENST00000684017.1:ENST00000684273.1:ENST00000513865.5:ENST00000505648.5:ENST00000508980.5:ENST00000369627.6:ENST00000503491.5:ENST00000508658.6:ENST00000683097.1:ENST00000683541.1:ENST00000683759.1:ENST00000369635.7:ENST00000506182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	49	2	1.79385	2.380995	2.96814	0.0201222	0.00756432	0.121243	0.0749063
chr1	12344207	12344301	29415	0	+	0.37234	(0.35,0.378]	chr1	3609	8	INTRON	INTRON	VPS13D	ENSG00000048707.15	ENST00000620676.6:ENST00000613099.4:ENST00000011700.10:ENST00000646917.1:ENST00000460333.5:ENST00000643711.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	79	2	1.87195	2.3809899999999997	2.89003	0.0122391	0.00738821	0.0910127	0.0769106
chr3	17731044	17731144	1630318	0	-	0.4	(0.378,0.408]	chr3	168275	288	INTRON	INTRON	TBC1D5	ENSG00000131374.15	ENST00000253692.11:ENST00000696125.1:ENST00000414318.2:ENST00000429383.8:ENST00000415814.6:ENST00000452492.6:ENST00000412981.5:ENST00000428355.5:ENST00000425944.5:ENST00000430169.5:ENST00000445294.5:ENST00000414349.5:ENST00000443499.6:ENST00000444756.5:ENST00000497531.5:ENST00000443386.5:ENST00000446863.5:ENST00000444471.5:ENST00000481396.5:ENST00000423331.6:ENST00000485432.1:ENST00000471679.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	58	2	2.05897	2.3809750000000003	2.70298	0.0339294	0.00325723	0.134508	0.0524329
chr5	21489825	21489925	2326032	0	+	0.4	(0.378,0.408]	chr5	225028	153	INTRON	INTRON	GUSBP1	ENSG00000183666.18	ENST00000508260.5:ENST00000449061.3:ENST00000685731.1:ENST00000688956.1:ENST00000692922.1:ENST00000686144.1:ENST00000607545.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	4	57	2	2.2259	2.38096	2.53602	0.0662381	0.0020933	0.181924	0.0424943
chr17	7485656	7485756	6553323	0	+	0.46	(0.44,0.476]	chr17	636529	4	INTRON	INTRON	POLR2A	ENSG00000181222.19	ENST00000617998.6:ENST00000674977.2:ENST00000572844.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	93	2	2.26085	2.3809500000000003	2.50105	0.0039479	0.00240161	0.0548259	0.0452061
chr15	57287954	57288054	6035841	0	+	0.33	(0.32,0.35]	chr15	574819	19	UTR3	UTR3:EXON_MRNA:INTRON	TCF12	ENSG00000140262.18	ENST00000438423.6:ENST00000267811.9:ENST00000333725.10:ENST00000557843.5:ENST00000343827.7:ENST00000560836.1:ENST00000560948.1	protein_coding	protein_coding	protein_coding	protein_coding	3	48	2	2.01768	2.380915	2.74415	0.0361337	0.0198267	0.152563	0.109608
chr6	28911306	28911403	3075471	0	-	0.340206	(0.32,0.35]	chr6	285938	1	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	TRIM27	ENSG00000204713.11	ENST00000377194.7:ENST00000377199.4:ENST00000481474.5:ENST00000498117.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	48	2	2.01768	2.380915	2.74415	0.0361337	0.0198267	0.152563	0.109608
chr18	2711399	2711499	6865443	0	+	0.28	[0,0.28]	chr18	680035	31	INTRON	INTRON	SMCHD1	ENSG00000101596.17	ENST00000320876.11:ENST00000688342.1:ENST00000693213.1:ENST00000577880.5:ENST00000584897.5:ENST00000581711.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	98	2	2.30641	2.38086	2.45531	0.0213596	0.00415834	0.113755	0.0590857
chr17	31953972	31954071	6595847	0	+	0.383838	(0.378,0.408]	chr17	641554	59	INTRON	INTRON	SUZ12	ENSG00000178691.11	ENST00000322652.10:ENST00000580398.1	protein_coding	protein_coding	protein_coding	protein_coding	3	43	2	2.29798	2.380855	2.46373	0.0382831	0.0147606	0.141795	0.106702
chr17	82530789	82530889	6692715	0	+	0.38	(0.378,0.408]	chr17	654627	101	INTRON	INTRON	FOXK2	ENSG00000141568.21	ENST00000473637.6:ENST00000335255.10:ENST00000527313.6:ENST00000570585.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	43	2	2.29798	2.380855	2.46373	0.0382831	0.0147606	0.141795	0.106702
chr18	164827	164925	6854889	0	+	0.408163	(0.378,0.408]	chr18	679502	10	INTRON	INTRON	USP14	ENSG00000101557.15	ENST00000582707.5:ENST00000400266.7:ENST00000261601.8:ENST00000578942.5:ENST00000383589.6:ENST00000583119.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	43	2	2.29798	2.380855	2.46373	0.0382831	0.0147606	0.141795	0.106702
chr6	37312217	37312317	2855862	0	+	0.39	(0.378,0.408]	chr6	269985	205	INTRON	INTRON	TBC1D22B	ENSG00000065491.8	ENST00000373491.3	protein_coding	protein_coding	protein_coding	protein_coding	3	43	2	2.29798	2.380855	2.46373	0.0382831	0.0147606	0.141795	0.106702
chr21	42870761	42870861	7467822	0	-	0.36	(0.35,0.378]	chr21	760973	68	INTRON	INTRON	WDR4	ENSG00000160193.12	ENST00000330317.6:ENST00000476326.5:ENST00000398208.3:ENST00000492742.5:ENST00000479429.5:ENST00000463902.5:ENST00000470658.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	73	2	2.20096	2.380835	2.56071	0.0087123	0.00725312	0.0844834	0.072984
chr1	173931578	173931678	587111	0	-	0.29	(0.28,0.32]	chr1	70649	6	UTR3	UTR3:EXON_MRNA	RC3H1	ENSG00000135870.12	ENST00000367696.7:ENST00000258349.8	protein_coding	protein_coding	protein_coding	protein_coding	4	64	2	1.68409	2.3807650000000002	3.07744	0.0548665	0.00604536	0.165463	0.0700813
chr15	50597847	50597944	6172371	0	-	0.505155	(0.476,0.515]	chr15	588276	11	INTRON	INTRON	TRPM7	ENSG00000092439.16	ENST00000646667.1:ENST00000560955.5:ENST00000560284.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	42	2	2.10874	2.38071	2.65268	0.0285608	0.0201975	0.12666	0.121243
chr22	19093183	19093283	7551722	0	-	0.49	(0.476,0.515]	chr22	771903	33	INTRON	INTRON	DGCR2	ENSG00000070413.20	ENST00000537045.5:ENST00000545799.5:ENST00000263196.12:ENST00000389262.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	42	2	2.10874	2.38071	2.65268	0.0285608	0.0201975	0.12666	0.121243
chr8	102286932	102287024	4011453	0	-	0.5	(0.476,0.515]	chr8	367063	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	UBR5	ENSG00000104517.13	ENST00000520539.6:ENST00000220959.8:ENST00000521922.5	protein_coding	protein_coding	protein_coding	protein_coding	3	42	2	2.10874	2.38071	2.65268	0.0285608	0.0201975	0.12666	0.121243
chr15	92893854	92893953	6103618	0	+	0.50505	(0.476,0.515]	chr15	581375	14	INTRON	INTRON	CHASERR:ENSG00000279765	ENSG00000272888.8:ENSG00000279765.3	ENST00000653163.1:ENST00000557682.6:ENST00000556895.5:ENST00000629685.2:ENST00000554133.5:ENST00000630790.1:ENST00000555520.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	9	81	2	1.51533	2.3806450000000003	3.24596	0.0184991	0.00322919	0.116738	0.0507087
chrX	73848227	73848327	7838006	0	-	0.43	(0.408,0.44]	chrX	799611	109	EXON_LNCRNA	EXON_LNCRNA:INTRON	XIST	ENSG00000229807.13	ENST00000650627.1:ENST00000434839.3:ENST00000429829.6:ENST00000635841.2:ENST00000650637.1:ENST00000648970.1	lncRNA	lncRNA	lncRNA	lncRNA	35	428	2	2.22981	2.380635	2.53146	5.77133e-5	5.59891e-5	0.00654893	0.00620725
chr12	108688274	108688374	5406342	0	-	0.33	(0.32,0.35]	chr12	516011	95	INTRON	INTRON	CORO1C	ENSG00000110880.11	ENST00000261401.8:ENST00000420959.6:ENST00000541050.5:ENST00000549384.5:ENST00000421578.6:ENST00000550542.5:ENST00000549772.5:ENST00000552871.5:ENST00000547294.5:ENST00000550032.5:ENST00000551550.5:ENST00000546571.5:ENST00000551044.1:ENST00000547170.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	66	2	1.68188	2.3806149999999997	3.07935	0.031521	0.00724137	0.144381	0.0729826
chrX	24753775	24753875	7632314	0	+	0.33	(0.32,0.35]	chrX	781725	44	INTRON	INTRON	POLA1	ENSG00000101868.13	ENST00000672178.1:ENST00000379068.8:ENST00000379059.7:ENST00000611764.2:ENST00000480125.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	66	2	1.68188	2.3806149999999997	3.07935	0.031521	0.00724137	0.144381	0.0729826
chr5	65930403	65930503	2370882	0	+	0.55	(0.515,0.57]	chr5	228472	32	INTRON	INTRON	ERBIN	ENSG00000112851.15	ENST00000380943.6:ENST00000507490.1:ENST00000416865.6:ENST00000380935.5:ENST00000284037.10:ENST00000380938.6:ENST00000511297.5:ENST00000506030.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	79	2	2.11946	2.380585	2.64171	0.00559899	0.00130576	0.0678837	0.0331539
chr18	735621	735719	6939926	0	-	0.591837	(0.57,1]	chr18	686461	23	INTRON	INTRON	YES1	ENSG00000176105.14	ENST00000584307.5:ENST00000314574.5:ENST00000577961.5	protein_coding	protein_coding	protein_coding	protein_coding	3	23	2	2.23711	2.38058	2.52405	0.0263139	0.0172108	0.133676	0.104099
chr1	52857279	52857373	105052	0	+	0.361702	(0.35,0.378]	chr1	13729	4	CDS	CDS:EXON_MRNA:INTRON	ZYG11A	ENSG00000203995.10	ENST00000371532.5:ENST00000612017.4:ENST00000371528.2	protein_coding	protein_coding	protein_coding	protein_coding	8	81	2	1.38936	2.380555	3.37175	0.0361852	0.00236696	0.152746	0.043778
chr22	40059781	40059881	7516997	0	+	0.47	(0.44,0.476]	chr22	768084	138	INTRON	INTRON	TNRC6B	ENSG00000100354.21	ENST00000301923.13:ENST00000441751.5:ENST00000402203.5	protein_coding	protein_coding	protein_coding	protein_coding	6	77	2	1.60467	2.3805300000000003	3.15639	0.0411383	3.93757e-4	0.1451	0.0178567
chr17	51099878	51099978	6796808	0	-	0.45	(0.44,0.476]	chr17	671024	198	INTRON	INTRON	SPAG9	ENSG00000008294.22	ENST00000262013.12:ENST00000505279.5:ENST00000357122.8	protein_coding	protein_coding	protein_coding	protein_coding	5	70	2	2.02558	2.380515	2.73545	0.0363567	7.908e-4	0.138959	0.0258324
chr15	89114423	89114523	6094831	0	+	0.4	(0.378,0.408]	chr15	579995	2	INTRON	INTRON	ABHD2	ENSG00000140526.18	ENST00000569411.5:ENST00000569550.5:ENST00000565066.5:ENST00000565973.5:ENST00000352732.10	protein_coding	protein_coding	protein_coding	protein_coding	3	43	2	1.97143	2.380445	2.78946	0.0398704	0.0158859	0.161534	0.101453
chr11	118455780	118455879	4872314	0	+	0.454545	(0.44,0.476]	chr11	454987	59	INTRON	INTRON	ENSG00000285827:KMT2A	ENSG00000285827.1:ENSG00000118058.24	ENST00000648261.1:ENST00000389506.10:ENST00000534358.8:ENST00000533790.3:ENST00000527869.7:ENST00000649690.2:ENST00000691053.1:ENST00000531904.6:ENST00000649699.1:ENST00000648029.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	57	2	1.84134	2.38042	2.9195	0.0175428	0.0102021	0.11319	0.0850389
chr13	52014464	52014564	5503388	0	+	0.36	(0.35,0.378]	chr13	526601	15	INTRON	INTRON	ALG11	ENSG00000253710.5	ENST00000649708.2:ENST00000521508.2:ENST00000681053.1:ENST00000681047.1:ENST00000679544.1:ENST00000649340.2:ENST00000680793.1:ENST00000523764.1:ENST00000680950.1:ENST00000679359.1:ENST00000681226.1:ENST00000681145.1:ENST00000616513.1:ENST00000650049.2:ENST00000679495.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	47	2	2.19034	2.380415	2.57049	0.0262669	0.023941	0.133676	0.119443
chr7	158807163	158807263	3689590	0	-	0.56	(0.515,0.57]	chr7	342421	77	INTRON	INTRON	ESYT2	ENSG00000117868.18	ENST00000251527.10:ENST00000275418.13:ENST00000652148.1:ENST00000483958.5:ENST00000497111.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	15	163	2	2.27098	2.380345	2.48971	5.14908e-4	1.55412e-4	0.0208667	0.0106835
chr19	10741230	10741329	7014001	0	+	0.484848	(0.476,0.515]	chr19	696920	222	INTRON	INTRON	DNM2	ENSG00000079805.19	ENST00000683738.1:ENST00000682285.1:ENST00000682524.1:ENST00000355667.11:ENST00000389253.9:ENST00000585892.5:ENST00000359692.10:ENST00000408974.8:ENST00000586939.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	12	152	2	1.91155	2.38033	2.84911	0.00521461	6.96651e-5	0.0633615	0.00691946
chr8	125210683	125210783	3854680	0	+	0.45	(0.44,0.476]	chr8	355249	280	INTRON	INTRON	NSMCE2	ENSG00000156831.8	ENST00000517532.5:ENST00000287437.8:ENST00000522563.5:ENST00000517315.1	protein_coding	protein_coding	protein_coding	protein_coding	6	77	2	1.93713	2.38032	2.82351	0.0138947	0.00191049	0.0955491	0.0403772
chr11	45972852	45972951	4943747	0	-	0.50505	(0.476,0.515]	chr11	463325	11	INTRON	INTRON	PHF21A	ENSG00000135365.17	ENST00000676320.1:ENST00000323180.10:ENST00000530587.6:ENST00000693049.1:ENST00000692878.1:ENST00000690620.1:ENST00000418153.6:ENST00000525676.6:ENST00000689695.1:ENST00000685188.1:ENST00000532883.5:ENST00000525679.1:ENST00000524497.5:ENST00000531959.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	56	2	1.99197	2.38026	2.76855	0.039572	0.00244302	0.143072	0.0456956
chr19	902727	902827	7110833	0	-	0.49	(0.476,0.515]	chr19	714173	1	SS3_PROX	SS3_PROX:INTRON	R3HDM4	ENSG00000198858.10	ENST00000589428.5:ENST00000361574.10:ENST00000587975.2:ENST00000590454.2:ENST00000589445.1:ENST00000626716.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	56	2	1.99197	2.38026	2.76855	0.039572	0.00244302	0.143072	0.0456956
chr1	182844533	182844633	273029	0	+	0.44	(0.408,0.44]	chr1	31871	7	INTRON	INTRON	DHX9	ENSG00000135829.17	ENST00000367549.4:ENST00000483416.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	16	204	2	2.32844	2.380245	2.43205	4.44946e-4	2.4768e-4	0.0194896	0.0139383
chr1	193168190	193168290	285083	0	+	0.33	(0.32,0.35]	chr1	32819	66	INTRON	INTRON	CDC73	ENSG00000134371.14	ENST00000649895.1:ENST00000643006.1:ENST00000367435.5:ENST00000650197.1:ENST00000648071.1:ENST00000635846.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	59	2	2.18777	2.3802000000000003	2.57263	0.0312297	0.00951422	0.13151	0.0863913
chr11	2981201	2981301	4891886	0	-	0.47	(0.44,0.476]	chr11	458354	1	SS5_PROX	SS5_PROX:INTRON	NAP1L4	ENSG00000205531.13	ENST00000620138.4:ENST00000380542.9:ENST00000526115.5:ENST00000532325.6:ENST00000448187.5:ENST00000399614.6:ENST00000430811.5:ENST00000529361.5:ENST00000528968.5:ENST00000530064.5:ENST00000526842.5:ENST00000531291.5:ENST00000455338.6:ENST00000534372.1	protein_coding	protein_coding	protein_coding	protein_coding	27	337	2	2.28395	2.3802	2.47645	3.30481e-4	2.04788e-5	0.0168431	0.00351769
chr19	36227351	36227451	7057547	0	+	0.39	(0.378,0.408]	chr19	704664	88	INTRON	INTRON	ZNF146	ENSG00000167635.12	ENST00000456324.5:ENST00000591063.5:ENST00000443387.3:ENST00000586094.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	91	2	2.32375	2.38016	2.43657	0.0106733	0.00134834	0.0861859	0.0338207
chr18	807020	807120	6940654	0	-	0.52	(0.515,0.57]	chr18	686527	90	INTRON	INTRON	YES1	ENSG00000176105.14	ENST00000584307.5:ENST00000314574.5:ENST00000577611.1:ENST00000581960.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	14	155	2	2.24052	2.380045	2.51957	6.90756e-4	1.77641e-4	0.0240212	0.0121697
chr6	26196455	26196551	3071006	0	-	0.53125	(0.515,0.57]	chr6	285430	10	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ENSG00000282988	ENSG00000282988.2	ENST00000635641.1:ENST00000650491.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	13	141	2	2.2044	2.380025	2.55565	7.45389e-4	3.23259e-4	0.0251072	0.0159645
chr1	161767803	161767902	235860	0	+	0.333333	(0.32,0.35]	chr1	28516	6	INTRON	INTRON	ATF6	ENSG00000118217.7	ENST00000680688.1:ENST00000679853.1:ENST00000681738.1:ENST00000681801.1:ENST00000681779.1:ENST00000367942.4:ENST00000681001.1:ENST00000679886.1:ENST00000681169.1:ENST00000681492.1:ENST00000680481.1:ENST00000680180.1:ENST00000681187.1:ENST00000680462.1:ENST00000680633.1:ENST00000681557.1:ENST00000681912.1:ENST00000679833.1:ENST00000681541.1:ENST00000681036.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	36	2	2.31405	2.379925	2.4458	0.0517107	0.0425977	0.176696	0.148082
chr11	120389971	120390071	4876736	0	+	0.35	(0.32,0.35]	chr11	455802	41	INTRON	INTRON	ARHGEF12	ENSG00000196914.9	ENST00000397843.7:ENST00000356641.7:ENST00000532993.5:ENST00000529970.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	36	2	2.31405	2.379925	2.4458	0.0517107	0.0425977	0.176696	0.148082
chr16	18129565	18129665	6453929	0	-	0.35	(0.32,0.35]	chr16	621960	1258	INTRON	INTRON	ENSG00000259929:ENSG00000260242	ENSG00000259929.5:ENSG00000260242.1	ENST00000567304.1:ENST00000563866.1	lncRNA	lncRNA	lncRNA	lncRNA	2	36	2	2.31405	2.379925	2.4458	0.0517107	0.0425977	0.176696	0.148082
chr20	49686487	49686587	7353354	0	-	0.33	(0.32,0.35]	chr20	749846	294	INTRON	INTRON	B4GALT5	ENSG00000158470.5	ENST00000371711.4	protein_coding	protein_coding	protein_coding	protein_coding	2	36	2	2.31405	2.379925	2.4458	0.0517107	0.0425977	0.176696	0.148082
chr5	177038026	177038126	2553084	0	+	0.35	(0.32,0.35]	chr5	243771	144	INTRON	INTRON	ZNF346	ENSG00000113761.12	ENST00000512315.5:ENST00000358149.8:ENST00000506693.5:ENST00000503425.5:ENST00000508155.5:ENST00000511834.5:ENST00000503039.1:ENST00000513587.5:ENST00000510933.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	36	2	2.31405	2.379925	2.4458	0.0517107	0.0425977	0.176696	0.148082
chr9	124673407	124673507	4348236	0	-	0.35	(0.32,0.35]	chr9	399255	777	INTRON	INTRON	NR6A1	ENSG00000148200.17	ENST00000487099.7:ENST00000373584.7:ENST00000416460.6:ENST00000344523.8	protein_coding	protein_coding	protein_coding	protein_coding	2	36	2	2.31405	2.379925	2.4458	0.0517107	0.0425977	0.176696	0.148082
chrX	103253444	103253534	7856423	0	-	0.333333	(0.32,0.35]	chrX	801046	6	UTR3	UTR3:EXON_MRNA	TCEAL8	ENSG00000180964.17	ENST00000360000.8:ENST00000372685.8	protein_coding	protein_coding	protein_coding	protein_coding	3	49	2	2.30673	2.379895	2.45306	0.0584434	0.00916394	0.167723	0.0855292
chr3	12838075	12838171	1617475	0	-	0.510417	(0.476,0.515]	chr3	167013	15	INTRON	INTRON	RPL32	ENSG00000144713.13	ENST00000429711.7:ENST00000396957.5:ENST00000273223.10:ENST00000435983.5:ENST00000396953.6:ENST00000457131.1	protein_coding	protein_coding	protein_coding	protein_coding	7	95	2	1.91368	2.37988	2.84608	0.0135123	6.05245e-4	0.101363	0.0226059
chr22	20525264	20525363	7479527	0	+	0.424242	(0.408,0.44]	chr22	762964	5	INTRON	INTRON	MED15	ENSG00000099917.17	ENST00000445987.5:ENST00000444094.5:ENST00000414658.5:ENST00000486656.5:ENST00000433831.5:ENST00000432052.5:ENST00000292733.11:ENST00000263205.11:ENST00000477824.5:ENST00000406969.5:ENST00000382974.6:ENST00000441501.5:ENST00000438962.1:ENST00000445189.5:ENST00000451058.5:ENST00000473028.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	12	137	2	1.40383	2.37986	3.35589	0.0275038	2.36834e-5	0.123904	0.00380885
chr20	49944026	49944123	7285723	0	+	0.412371	(0.408,0.44]	chr20	741192	2	EXON_MRNA	EXON_MRNA:INTRON	RNF114	ENSG00000124226.11	ENST00000623528.3:ENST00000622999.3:ENST00000244061.6:ENST00000625177.3:ENST00000623732.3:ENST00000622920.1:ENST00000624666.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	166	2	2.28219	2.3798250000000003	2.47746	0.00215449	1.39487e-4	0.0417866	0.0101825
chr16	71729394	71729493	6513637	0	-	0.414141	(0.408,0.44]	chr16	631052	5	UTR3	UTR3:EXON_MRNA	AP1G1	ENSG00000166747.13	ENST00000299980.9	protein_coding	protein_coding	protein_coding	protein_coding	8	93	2	1.83931	2.37982	2.92033	0.00806984	0.00162151	0.0806514	0.0367655
chr13	79379806	79379906	5626145	0	-	0.24	[0,0.28]	chr13	536667	5	INTRON	INTRON	RBM26	ENSG00000139746.16	ENST00000438737.3:ENST00000438724.5:ENST00000622611.4:ENST00000267229.11:ENST00000472143.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	60	2	2.3719	2.379735	2.38757	0.0552962	0.0139689	0.165463	0.10247
chr7	127730598	127730698	3403196	0	+	0.38	(0.378,0.408]	chr7	318134	88	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000468166.5:ENST00000465900.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	59	2	1.80483	2.37971	2.95459	0.0201276	0.00957623	0.121243	0.0820838
chr5	95735208	95735306	2431281	0	+	0.316327	(0.28,0.32]	chr5	233640	26	INTRON	INTRON	RHOBTB3	ENSG00000164292.13	ENST00000510226.5:ENST00000504949.1:ENST00000506959.5:ENST00000379982.8:ENST00000512878.1:ENST00000510623.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	85	2	2.28714	2.379585	2.47203	0.0114089	0.00696126	0.0886611	0.0754576
chr15	57995738	57995837	6186833	0	-	0.383838	(0.378,0.408]	chr15	589758	2	INTRON	INTRON	ALDH1A2	ENSG00000128918.15	ENST00000537372.5:ENST00000249750.9:ENST00000347587.7:ENST00000430119.6:ENST00000558231.5:ENST00000559517.5:ENST00000559266.5:ENST00000561070.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	89	2	2.1653	2.37955	2.5938	0.00614976	0.00289537	0.0676501	0.0494641
chr5	151783690	151783789	2521912	0	+	0.323232	(0.32,0.35]	chr5	241290	56	INTRON	INTRON	G3BP1	ENSG00000145907.16	ENST00000523519.5:ENST00000520578.6:ENST00000627077.2:ENST00000678976.1:ENST00000677408.1:ENST00000678070.1:ENST00000678964.1:ENST00000678925.1:ENST00000394123.7:ENST00000676978.1:ENST00000679289.1:ENST00000677493.1:ENST00000676644.1:ENST00000677757.1:ENST00000522761.6:ENST00000677909.1:ENST00000676827.1:ENST00000520177.6:ENST00000676634.1:ENST00000678854.1:ENST00000677602.1:ENST00000519832.1:ENST00000518726.5:ENST00000676911.1:ENST00000356245.8:ENST00000678646.1:ENST00000677381.1:ENST00000678904.1:ENST00000678910.1:ENST00000678101.1:ENST00000677105.1:ENST00000676813.1:ENST00000522367.6:ENST00000517947.5:ENST00000507878.7:ENST00000520006.2:ENST00000678369.1:ENST00000677433.1:ENST00000678564.1:ENST00000677252.1:ENST00000677369.1:ENST00000677284.1:ENST00000676894.1:ENST00000677923.1:ENST00000677323.1:ENST00000522666.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	126	2	1.89094	2.379525	2.86811	0.0185636	1.82911e-4	0.108861	0.01176
chr2	108602882	108602981	846537	0	+	0.424242	(0.408,0.44]	chr2	94686	79	INTRON	INTRON	LIMS1	ENSG00000169756.17	ENST00000695516.1:ENST00000544547.6:ENST00000695517.1:ENST00000695518.1:ENST00000695519.1:ENST00000332345.10:ENST00000695520.1:ENST00000393310.5:ENST00000695521.1	protein_coding	protein_coding	protein_coding	protein_coding	4	58	2	2.14732	2.37951	2.6117	0.0237354	0.00555224	0.129075	0.0648867
chr2	38571020	38571120	1099450	0	-	0.38	(0.378,0.408]	chr2	117914	7	INTRON	INTRON	HNRNPLL	ENSG00000143889.16	ENST00000449105.8:ENST00000409636.5:ENST00000358367.8:ENST00000608859.5:ENST00000378915.7:ENST00000272249.7:ENST00000409328.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	59	2	1.5653	2.37949	3.19368	0.043739	0.00426861	0.162255	0.0573912
chr21	37390496	37390596	7406459	0	+	0.38	(0.378,0.408]	chr21	754850	150	INTRON	INTRON	DYRK1A	ENSG00000157540.22	ENST00000646523.1:ENST00000647425.1:ENST00000647188.2:ENST00000647504.1:ENST00000644942.1:ENST00000338785.8:ENST00000643624.1:ENST00000643551.1:ENST00000426672.6:ENST00000398960.7	protein_coding	protein_coding	protein_coding	protein_coding	28	333	2	1.92898	2.379455	2.82993	5.22221e-4	3.64472e-5	0.0204892	0.00511885
chr7	100688990	100689084	3587497	0	-	0.361702	(0.35,0.378]	chr7	334640	9	UTR5	UTR5:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GIGYF1	ENSG00000146830.11	ENST00000678049.1:ENST00000646601.1:ENST00000275732.5:ENST00000643385.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	14	190	2	1.99502	2.37935	2.76368	0.0018035	2.445e-4	0.0393002	0.014414
chr19	8451706	8451806	7010831	0	+	0.53	(0.515,0.57]	chr19	696137	62	INTRON	INTRON	HNRNPM	ENSG00000099783.12	ENST00000348943.7:ENST00000597813.5:ENST00000600092.5:ENST00000325495.9:ENST00000600806.5:ENST00000620401.4:ENST00000594907.5:ENST00000596984.5:ENST00000601645.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	43	2	1.56681	2.379295	3.19178	0.064862	0.00289534	0.179394	0.0494641
chr16	22288441	22288540	6321519	0	+	0.353535	(0.35,0.378]	chr16	605178	46	UTR3	UTR3:EXON_MRNA	EEF2K	ENSG00000103319.12	ENST00000263026.10	protein_coding	protein_coding	protein_coding	protein_coding	4	54	2	1.97646	2.37929	2.78212	0.0193942	0.0168532	0.119831	0.103549
chr1	19476797	19476897	388822	0	-	0.5	(0.476,0.515]	chr1	46394	271	INTRON	INTRON	CAPZB	ENSG00000077549.19	ENST00000264202.8:ENST00000264203.7:ENST00000375142.5:ENST00000482808.2:ENST00000674449.1:ENST00000674390.1:ENST00000375144.6:ENST00000674432.1:ENST00000433834.5:ENST00000459967.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	41	2	2.19809	2.37921	2.56033	0.0287634	0.020317	0.127066	0.121522
chr14	31011847	31011947	5857728	0	-	0.49	(0.476,0.515]	chr14	556508	475	INTRON	INTRON	STRN3	ENSG00000196792.12	ENST00000355683.9:ENST00000357479.10:ENST00000555358.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	41	2	2.19809	2.37921	2.56033	0.0287634	0.020317	0.127066	0.121522
chr4	184689033	184689131	2087172	0	+	0.510204	(0.476,0.515]	chr4	206364	30	INTRON	INTRON	PRIMPOL	ENSG00000164306.11	ENST00000515774.5:ENST00000503752.5:ENST00000512834.5:ENST00000314970.11:ENST00000509002.5:ENST00000508001.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	41	2	2.19809	2.37921	2.56033	0.0287634	0.020317	0.127066	0.121522
chr16	21440047	21440147	6460715	0	-	0.49	(0.476,0.515]	chr16	623222	86	INTRON	INTRON	NPIPB3	ENSG00000169246.16	ENST00000521589.5:ENST00000545358.5:ENST00000543368.1:ENST00000544154.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	18	217	2	1.83527	2.379165	2.92306	0.00214011	3.89788e-5	0.0429492	0.00533644
chr1	52851366	52851466	104992	0	+	0.41	(0.408,0.44]	chr1	13720	80	INTRON	INTRON	ZYG11A	ENSG00000203995.10	ENST00000371532.5:ENST00000612017.4:ENST00000371528.2	protein_coding	protein_coding	protein_coding	protein_coding	2	31	2	2.36073	2.379115	2.3975	0.0481658	0.040266	0.161534	0.153019
chr1	155736407	155736507	230004	0	+	0.44	(0.408,0.44]	chr1	27060	4	SS3_PROX	SS3_PROX:INTRON	DAP3	ENSG00000132676.16	ENST00000471642.6:ENST00000343043.7:ENST00000368336.10:ENST00000535183.5:ENST00000421487.6:ENST00000477394.5:ENST00000475056.5:ENST00000490249.5:ENST00000463295.1	protein_coding	protein_coding	protein_coding	protein_coding	7	86	2	1.74813	2.379115	3.0101	0.0163902	0.00109848	0.109715	0.0304585
chr1	203864382	203864461	297333	0	+	0.417722	(0.408,0.44]	chr1	34245	3	INTRON	INTRON	SNRPE	ENSG00000182004.13	ENST00000414487.7:ENST00000475035.5:ENST00000483099.5:ENST00000470492.5:ENST00000469451.1:ENST00000367208.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	31	2	2.36073	2.379115	2.3975	0.0481658	0.040266	0.161534	0.153019
chr12	31291729	31291827	5302504	0	-	0.418367	(0.408,0.44]	chr12	504637	36	INTRON	INTRON	SINHCAF	ENSG00000139146.14	ENST00000337682.9:ENST00000539409.5:ENST00000448582.6:ENST00000454658.6:ENST00000544921.5:ENST00000542983.1:ENST00000539004.5:ENST00000543615.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	31	2	2.36073	2.379115	2.3975	0.0481658	0.040266	0.161534	0.153019
chr16	81528485	81528585	6405836	0	+	0.42	(0.408,0.44]	chr16	615031	326	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6	protein_coding	protein_coding	protein_coding	protein_coding	2	31	2	2.36073	2.379115	2.3975	0.0481658	0.040266	0.161534	0.153019
chr17	72938533	72938633	6833407	0	-	0.43	(0.408,0.44]	chr17	675178	884	INTRON	INTRON	SLC39A11	ENSG00000133195.12	ENST00000255559.8:ENST00000542342.6:ENST00000582769.5:ENST00000579491.1:ENST00000584129.1:ENST00000579732.5:ENST00000580557.5:ENST00000583146.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	31	2	2.36073	2.379115	2.3975	0.0481658	0.040266	0.161534	0.153019
chr2	178428823	178428922	930416	0	+	0.434343	(0.408,0.44]	chr2	102176	26	EXON_LNCRNA	EXON_LNCRNA:INTRON	CHROMR	ENSG00000223960.8	ENST00000453026.7:ENST00000690483.1:ENST00000436616.4:ENST00000665039.1:ENST00000663803.1:ENST00000666480.1:ENST00000688877.1:ENST00000661271.1:ENST00000691722.1:ENST00000659708.2:ENST00000692047.1:ENST00000684892.1:ENST00000420672.1:ENST00000691078.1:ENST00000668138.1:ENST00000660374.1:ENST00000454488.6:ENST00000450044.1:ENST00000688261.1:ENST00000691493.1:ENST00000662743.1:ENST00000415236.1	lncRNA	lncRNA	lncRNA	lncRNA	2	31	2	2.36073	2.379115	2.3975	0.0481658	0.040266	0.161534	0.153019
chr3	9992368	9992468	1362024	0	+	0.44	(0.408,0.44]	chr3	143393	1	SS3_PROX	SS3_PROX:INTRON	EMC3-AS1	ENSG00000180385.9	ENST00000692142.1:ENST00000366264.6:ENST00000693066.1:ENST00000326237.3:ENST00000440568.1:ENST00000438698.1:ENST00000424904.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	2	31	2	2.36073	2.379115	2.3975	0.0481658	0.040266	0.161534	0.153019
chr3	142354204	142354303	1836652	0	-	0.424242	(0.408,0.44]	chr3	184543	65	INTRON	INTRON	XRN1	ENSG00000114127.11	ENST00000264951.8:ENST00000392981.7:ENST00000498077.6	protein_coding	protein_coding	protein_coding	protein_coding	2	31	2	2.36073	2.379115	2.3975	0.0481658	0.040266	0.161534	0.153019
chr4	1710675	1710775	2095209	0	-	0.41	(0.408,0.44]	chr4	207220	66	INTRON	INTRON	SLBP	ENSG00000163950.13	ENST00000489418.6:ENST00000429429.6:ENST00000318386.8:ENST00000483348.5:ENST00000488267.5:ENST00000480936.1	protein_coding	protein_coding	protein_coding	protein_coding	2	31	2	2.36073	2.379115	2.3975	0.0481658	0.040266	0.161534	0.153019
chr4	2855827	2855927	1915146	0	+	0.43	(0.408,0.44]	chr4	192260	4	INTRON	INTRON	ADD1	ENSG00000087274.19	ENST00000683351.1:ENST00000398125.5:ENST00000264758.11:ENST00000508684.5:ENST00000510101.5:ENST00000511797.5:ENST00000513328.6:ENST00000509039.5:ENST00000508277.5:ENST00000503455.6:ENST00000540541.1:ENST00000355842.7:ENST00000651918.1:ENST00000374281.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	31	2	2.36073	2.379115	2.3975	0.0481658	0.040266	0.161534	0.153019
chr6	20553573	20553672	2828574	0	+	0.434343	(0.408,0.44]	chr6	265644	45	INTRON	INTRON	CDKAL1	ENSG00000145996.11	ENST00000274695.8:ENST00000613575.4:ENST00000378610.1	protein_coding	protein_coding	protein_coding	protein_coding	2	31	2	2.36073	2.379115	2.3975	0.0481658	0.040266	0.161534	0.153019
chr6	167903881	167903981	3035119	0	+	0.44	(0.408,0.44]	chr6	282779	11	INTRON	INTRON	AFDN	ENSG00000130396.21	ENST00000683244.1:ENST00000351017.9:ENST00000344191.8:ENST00000392112.5:ENST00000392108.7:ENST00000400822.7:ENST00000447894.6:ENST00000366809.6:ENST00000366806.6:ENST00000423229.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	31	2	2.36073	2.379115	2.3975	0.0481658	0.040266	0.161534	0.153019
chr7	5732085	5732181	3474467	0	-	0.416667	(0.408,0.44]	chr7	324871	9	INTRON	INTRON	RNF216	ENSG00000011275.19	ENST00000425013.6:ENST00000389902.8:ENST00000389900.8:ENST00000479541.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	31	2	2.36073	2.379115	2.3975	0.0481658	0.040266	0.161534	0.153019
chr9	96597418	96597518	4296473	0	-	0.43	(0.408,0.44]	chr9	395079	303	INTRON	INTRON	CDC14B	ENSG00000081377.17	ENST00000474602.5:ENST00000412285.6:ENST00000375241.6:ENST00000375240.7:ENST00000463569.5:ENST00000415608.1:ENST00000496750.5:ENST00000463547.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	31	2	2.36073	2.379115	2.3975	0.0481658	0.040266	0.161534	0.153019
chr17	82853319	82853419	6695229	0	+	0.5	(0.476,0.515]	chr17	654911	68	INTRON	INTRON	TBCD	ENSG00000141556.22	ENST00000682479.1:ENST00000682722.1:ENST00000684464.1:ENST00000684544.1:ENST00000681983.1:ENST00000684361.1:ENST00000683184.1:ENST00000683282.1:ENST00000684408.1:ENST00000355528.9:ENST00000683444.1:ENST00000684776.1:ENST00000683041.1:ENST00000684760.1:ENST00000684349.1:ENST00000682213.1:ENST00000683009.1:ENST00000682921.1:ENST00000539345.6:ENST00000684000.1:ENST00000684188.1:ENST00000684429.1:ENST00000682610.1:ENST00000683821.1:ENST00000682654.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	41	2	1.99341	2.3790050000000003	2.7646	0.037389	0.0162075	0.155878	0.101453
chr4	956693	956792	1908715	0	+	0.484848	(0.476,0.515]	chr4	191343	5	EXON_MRNA	EXON_MRNA:INTRON	TMEM175	ENSG00000127419.17	ENST00000513952.5:ENST00000515492.5:ENST00000264771.9:ENST00000452360.6:ENST00000515740.5:ENST00000438836.6:ENST00000508204.5:ENST00000510493.5:ENST00000622959.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	41	2	1.99341	2.3790050000000003	2.7646	0.037389	0.0162075	0.155878	0.101453
chr21	37377114	37377214	7406325	0	+	0.51	(0.476,0.515]	chr21	754850	16	INTRON	INTRON	DYRK1A	ENSG00000157540.22	ENST00000646523.1:ENST00000647425.1:ENST00000647188.2:ENST00000647504.1:ENST00000644942.1:ENST00000338785.8:ENST00000643624.1:ENST00000643551.1:ENST00000426672.6:ENST00000398960.7	protein_coding	protein_coding	protein_coding	protein_coding	12	152	2	2.33443	2.37899	2.42355	0.00160781	2.93053e-4	0.0365246	0.0152832
chr7	112460376	112460472	3381887	0	+	0.5	(0.476,0.515]	chr7	316789	10	INTRON	INTRON	IFRD1	ENSG00000006652.15	ENST00000675578.1:ENST00000621379.4:ENST00000005558.8:ENST00000403825.8:ENST00000674915.1:ENST00000674887.1:ENST00000675041.1:ENST00000675717.1:ENST00000535603.5:ENST00000466459.5:ENST00000486688.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	86	2	2.21639	2.3789800000000003	2.54157	0.00697457	0.00224357	0.0718189	0.0435144
chr11	111859189	111859284	5042659	0	-	0.536842	(0.515,0.57]	chr11	474971	11	INTRON	INTRON	ALG9	ENSG00000086848.15	ENST00000616540.5:ENST00000614444.4:ENST00000619129.4:ENST00000398006.6:ENST00000531154.5:ENST00000530851.6:ENST00000613181.4:ENST00000618252.1:ENST00000612489.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	38	2	2.12971	2.37894	2.62817	0.0757903	0.004048	0.194427	0.0578376
chr2	10794595	10794694	1066540	0	-	0.515152	(0.476,0.515]	chr2	113863	10	INTRON	INTRON	PDIA6	ENSG00000143870.13	ENST00000272227.8:ENST00000381611.8:ENST00000404371.6:ENST00000617249.4:ENST00000540494.5:ENST00000404824.2	protein_coding	protein_coding	protein_coding	protein_coding	5	57	2	1.87147	2.378885	2.8863	0.0157856	0.0111679	0.109464	0.0877435
chr22	20096991	20097091	7478406	0	+	0.33	(0.32,0.35]	chr22	762741	18	INTRON	INTRON	DGCR8	ENSG00000128191.16	ENST00000383024.6:ENST00000351989.8:ENST00000495826.5:ENST00000407755.1:ENST00000498171.5:ENST00000491892.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	67	2	1.38564	2.37887	3.3721	0.0793006	0.00182912	0.199711	0.0396683
chr5	65927605	65927705	2370854	0	+	0.37	(0.35,0.378]	chr5	228472	4	INTRON	INTRON	ERBIN	ENSG00000112851.15	ENST00000380943.6:ENST00000507490.1:ENST00000416865.6:ENST00000380935.5:ENST00000284037.10:ENST00000380938.6:ENST00000511297.5:ENST00000506030.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	112	2	1.77377	2.378805	2.98384	0.0180971	2.41007e-4	0.107237	0.0136674
chr16	67968238	67968338	6506288	0	-	0.7	(0.57,1]	chr16	629883	4	SS5_PROX	SS5_PROX:INTRON	SLC12A4	ENSG00000124067.17	ENST00000422611.6:ENST00000316341.8:ENST00000572037.5:ENST00000570802.5:ENST00000576616.5:ENST00000573023.6:ENST00000576377.1:ENST00000571299.5:ENST00000572010.5:ENST00000576462.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	30	2	2.17026	2.378795	2.58733	0.0220522	0.00454222	0.123836	0.0595107
chr16	88949217	88949317	6541019	0	-	0.6	(0.57,1]	chr16	634104	75	INTRON	INTRON	CBFA2T3	ENSG00000129993.15	ENST00000268679.9:ENST00000563640.1:ENST00000570046.1	protein_coding	protein_coding	protein_coding	protein_coding	5	36	2	2.37366	2.378785	2.38391	0.0104374	0.00373392	0.0902296	0.0535844
chr17	28930875	28930974	6746023	0	-	0.525253	(0.515,0.57]	chr17	662925	27	INTRON	INTRON	PHF12	ENSG00000109118.14	ENST00000332830.9:ENST00000577226.5:ENST00000582436.5:ENST00000378879.7:ENST00000268756.7:ENST00000583524.5:ENST00000483934.5:ENST00000584685.1:ENST00000582853.5:ENST00000584236.1:ENST00000583747.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	27	2	2.23241	2.378725	2.52504	0.0581268	0.029342	0.188651	0.128055
chr2	31984592	31984692	1090857	0	-	0.52	(0.515,0.57]	chr2	116913	214	INTRON	INTRON	MEMO1:DPY30	ENSG00000162959.14:ENSG00000162961.14	ENST00000295065.9:ENST00000446765.5:ENST00000404530.6:ENST00000490459.5:ENST00000426310.6:ENST00000413686.1:ENST00000407893.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	27	2	2.23241	2.378725	2.52504	0.0581268	0.029342	0.188651	0.128055
chr2	108569007	108569107	846192	0	+	0.54	(0.515,0.57]	chr2	94661	341	INTRON	INTRON	LIMS1	ENSG00000169756.17	ENST00000695516.1:ENST00000544547.6:ENST00000695517.1	protein_coding	protein_coding	protein_coding	protein_coding	2	27	2	2.23241	2.378725	2.52504	0.0581268	0.029342	0.188651	0.128055
chr8	73954947	73955046	3972425	0	-	0.525253	(0.515,0.57]	chr8	364268	78	INTRON	INTRON	ELOC	ENSG00000154582.18	ENST00000602840.5:ENST00000518127.5:ENST00000520242.6:ENST00000687224.1:ENST00000622804.2:ENST00000688584.1:ENST00000692141.1:ENST00000685938.1:ENST00000520210.1:ENST00000284811.12:ENST00000519487.6:ENST00000685250.1:ENST00000522337.5:ENST00000523815.5:ENST00000519082.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	27	2	2.23241	2.378725	2.52504	0.0581268	0.029342	0.188651	0.128055
chr9	33262346	33262431	4244190	0	-	0.564706	(0.515,0.57]	chr9	390167	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	BAG1	ENSG00000107262.26	ENST00000634734.3:ENST00000379704.7:ENST00000379707.7:ENST00000473781.1:ENST00000635077.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	27	2	2.23241	2.378725	2.52504	0.0581268	0.029342	0.188651	0.128055
chr8	94547818	94547918	3994085	0	-	0.46	(0.44,0.476]	chr8	365679	35	INTRON	INTRON	VIRMA	ENSG00000164944.12	ENST00000297591.10:ENST00000421249.2	protein_coding	protein_coding	protein_coding	protein_coding	4	50	2	1.49942	2.378715	3.25801	0.0792118	0.00248185	0.199574	0.0460771
chr1	33012699	33012795	416605	0	-	0.5	(0.476,0.515]	chr1	50320	7	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	AK2	ENSG00000004455.18	ENST00000373449.7:ENST00000672715.1:ENST00000695598.1:ENST00000550338.6:ENST00000695599.1:ENST00000354858.11:ENST00000695600.1:ENST00000695601.1:ENST00000491241.2:ENST00000695602.1:ENST00000469238.2:ENST00000695603.1:ENST00000695604.1:ENST00000672308.1:ENST00000548033.5:ENST00000467905.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	76	2	1.78917	2.378705	2.96824	0.022887	9.98194e-4	0.118056	0.0290732
chr10	38028382	38028482	4427075	0	+	0.29	(0.28,0.32]	chr10	408004	106	INTRON	INTRON	ZNF33A	ENSG00000189180.16	ENST00000307441.13:ENST00000374618.7:ENST00000628825.2:ENST00000458705.6:ENST00000432900.7:ENST00000469037.2:ENST00000478556.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	53	2	2.32871	2.378695	2.42868	0.0581621	0.0105331	0.167723	0.0908969
chr8	51898135	51898233	3946588	0	-	0.306122	(0.28,0.32]	chr8	362046	19	INTRON	INTRON	PCMTD1	ENSG00000168300.14	ENST00000544451.2:ENST00000360540.9:ENST00000522514.6:ENST00000519559.1:ENST00000521344.1:ENST00000521046.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	53	2	2.32871	2.378695	2.42868	0.0581621	0.0105331	0.167723	0.0908969
chr2	61512688	61512785	1130962	0	-	0.381443	(0.378,0.408]	chr2	121601	14	INTRON	INTRON	XPO1	ENSG00000082898.19	ENST00000677110.1:ENST00000676553.1:ENST00000677556.1:ENST00000677814.1:ENST00000676771.1:ENST00000677803.1:ENST00000677239.1:ENST00000678790.1:ENST00000677928.1:ENST00000678182.1:ENST00000677150.1:ENST00000678172.1:ENST00000678360.1:ENST00000678081.1:ENST00000676889.1:ENST00000676783.1:ENST00000679035.1:ENST00000677422.1:ENST00000677417.1:ENST00000677813.1:ENST00000676999.1:ENST00000676667.1:ENST00000678263.1:ENST00000678877.1:ENST00000677933.1:ENST00000680228.1:ENST00000677289.1:ENST00000677190.1:ENST00000401558.7:ENST00000428210.5:ENST00000677290.1:ENST00000677850.1:ENST00000451765.6:ENST00000676789.1:ENST00000678741.1:ENST00000404992.6:ENST00000406957.5:ENST00000443240.5:ENST00000476585.5:ENST00000468259.1:ENST00000420673.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	87	2	1.77782	2.378645	2.97947	0.0388177	2.2808e-4	0.143072	0.0133228
chr20	38939467	38939567	7272554	0	+	0.47	(0.44,0.476]	chr20	739054	122	INTRON	INTRON	FAM83D	ENSG00000101447.15	ENST00000619304.4:ENST00000619850.2	protein_coding	protein_coding	protein_coding	protein_coding	10	132	2	2.25704	2.37864	2.50024	0.0018274	7.41088e-4	0.0396683	0.0250148
chr1	149176790	149176879	216359	0	+	0.640449	(0.57,1]	chr1	24062	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ENSG00000274265	ENSG00000274265.5	ENST00000668239.1:ENST00000662742.1:ENST00000655610.1:ENST00000667654.1:ENST00000665384.1:ENST00000654174.1:ENST00000611769.4:ENST00000619653.1:ENST00000612135.1:ENST00000664903.1	lncRNA	lncRNA	lncRNA	lncRNA	4	27	2	1.52865	2.378605	3.22856	0.0730445	0.00205928	0.189414	0.0420839
chr18	9920510	9920610	6873406	0	+	0.58	(0.57,1]	chr18	680866	43	INTRON	INTRON	VAPA	ENSG00000101558.14	ENST00000400000.7:ENST00000577901.5:ENST00000340541.4:ENST00000585042.5:ENST00000578314.1:ENST00000584796.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	62	2	1.81052	2.378595	2.94667	0.00601156	1.7758e-4	0.0700813	0.0121697
chr15	43418111	43418211	6161072	0	-	0.41	(0.408,0.44]	chr15	586686	10	INTRON	INTRON	TP53BP1	ENSG00000067369.14	ENST00000382044.9:ENST00000263801.7:ENST00000382039.7:ENST00000411772.5:ENST00000450115.6:ENST00000434561.1:ENST00000572085.5:ENST00000571145.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	68	2	2.21857	2.37859	2.53861	0.0209591	0.00202413	0.112046	0.0416117
chr16	81489858	81489958	6405448	0	+	0.43	(0.408,0.44]	chr16	615026	440	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8	protein_coding	protein_coding	protein_coding	protein_coding	6	85	2	2.08376	2.3785049999999996	2.67325	0.0129886	0.00143252	0.0991656	0.0340925
chr16	74597969	74598069	6525241	0	-	0.38	(0.378,0.408]	chr16	631842	348	INTRON	INTRON	GLG1	ENSG00000090863.12	ENST00000205061.9:ENST00000422840.7:ENST00000447066.6:ENST00000562090.5:ENST00000567951.5:ENST00000627032.2:ENST00000565260.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	135	2	2.18144	2.378495	2.57555	0.0035488	3.56957e-4	0.0529478	0.0169148
chr16	24824484	24824581	6330200	0	+	0.391753	(0.378,0.408]	chr16	606061	8	UTR3	UTR3:EXON_MRNA:INTRON	TNRC6A	ENSG00000090905.19	ENST00000395799.8:ENST00000315183.11:ENST00000491718.5:ENST00000450465.6:ENST00000569098.1:ENST00000464539.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	59	2	1.88729	2.3784199999999998	2.86955	0.0532327	0.00159247	0.162538	0.0367961
chr4	87195123	87195223	2198266	0	-	0.3	(0.28,0.32]	chr4	215717	4	SS5_PROX	SS5_PROX:INTRON	KLHL8	ENSG00000145332.14	ENST00000273963.10:ENST00000498875.6:ENST00000425278.6:ENST00000506985.5:ENST00000512111.1:ENST00000505388.5:ENST00000504029.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	11	144	2	1.57149	2.378415	3.18534	0.0144778	8.08132e-4	0.10521	0.0263656
chr19	2342008	2342107	6997300	0	+	0.515152	(0.476,0.515]	chr19	693727	11	UTR3	UTR3:EXON_MRNA:INTRON	SPPL2B	ENSG00000005206.17	ENST00000621568.4:ENST00000613503.5:ENST00000610743.4:ENST00000618220.4:ENST00000612623.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	63	2	1.33919	2.378235	3.41728	0.06316	0.00165726	0.197199	0.0369207
chr4	32069876	32069976	1942147	0	+	0.26	[0,0.28]	chr4	194727	717	INTRON	INTRON	LINC02506	ENSG00000251129.3	ENST00000662669.1:ENST00000665582.2:ENST00000667252.2:ENST00000660373.2:ENST00000684849.1:ENST00000513211.2:ENST00000659613.1:ENST00000657576.1:ENST00000686730.1:ENST00000685407.1:ENST00000685455.1:ENST00000655951.1	lncRNA	lncRNA	lncRNA	lncRNA	7	125	2	1.52759	2.37817	3.22875	0.0484383	5.02502e-4	0.153635	0.020217099999999998
chr5	44819830	44819929	2352111	0	+	0.464646	(0.44,0.476]	chr5	226956	35	EXON_LNCRNA	EXON_LNCRNA	MRPS30	ENSG00000112996.11	ENST00000230914.4	protein_coding	processed_transcript	protein_coding	processed_transcript	5	67	2	1.81283	2.3780200000000002	2.94321	0.0343005	0.00111162	0.135641	0.0305384
chr11	108208220	108208320	5035042	0	-	0.32	(0.28,0.32]	chr11	474462	4	SS5_PROX	SS5_PROX:INTRON	NPAT	ENSG00000149308.17	ENST00000278612.9:ENST00000610253.5:ENST00000531384.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	55	2	2.22069	2.377955	2.53522	0.0310424	0.0243177	0.143457	0.12011
chrX	9531684	9531781	7619322	0	+	0.484536	(0.476,0.515]	chrX	779948	2	INTRON	INTRON	TBL1X	ENSG00000101849.18	ENST00000407597.7:ENST00000380961.5:ENST00000424279.6:ENST00000645353.2:ENST00000422314.5:ENST00000645686.1:ENST00000646640.1:ENST00000647172.1	protein_coding	protein_coding	protein_coding	protein_coding	5	67	2	2.26789	2.37789	2.48789	0.0176567	0.00256502	0.105233	0.0466761
chr11	33720695	33720793	4941178	0	-	0.428571	(0.408,0.44]	chr11	462923	12	INTRON	INTRON	CD59	ENSG00000085063.17	ENST00000642928.2:ENST00000651785.1:ENST00000652678.1:ENST00000395850.9:ENST00000652086.1:ENST00000426650.7:ENST00000533403.6:ENST00000415002.7:ENST00000445143.6:ENST00000437761.6:ENST00000351554.8:ENST00000527577.5:ENST00000643183.1:ENST00000528700.2	protein_coding	protein_coding	protein_coding	protein_coding	5	69	2	2.11447	2.3778699999999997	2.64127	0.0285207	0.00125199	0.12666	0.0328543
chr2	235565628	235565728	1042053	0	+	0.42	(0.408,0.44]	chr2	111222	407	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1:ENST00000402604.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	93	2	1.74555	2.377825	3.0101	0.0118908	0.00109848	0.0962115	0.0304585
chr12	118416333	118416433	5234810	0	+	0.45	(0.44,0.476]	chr12	496670	20	UTR3	UTR3:EXON_MRNA	SUDS3	ENSG00000111707.12	ENST00000543473.2	protein_coding	protein_coding	protein_coding	protein_coding	2	31	2	2.29425	2.3777999999999997	2.46135	0.0518406	0.0374637	0.176696	0.140008
chr18	2711796	2711896	6865447	0	+	0.47	(0.44,0.476]	chr18	680035	35	INTRON	INTRON	SMCHD1	ENSG00000101596.17	ENST00000320876.11:ENST00000688342.1:ENST00000693213.1:ENST00000577880.5:ENST00000584897.5:ENST00000581711.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	31	2	2.29425	2.3777999999999997	2.46135	0.0518406	0.0374637	0.176696	0.140008
chr19	209570	209654	7108783	0	-	0.440476	(0.44,0.476]	chr19	713681	5	EXON_MRNA	EXON_MRNA:SS3_PROX:SS5_PROX:INTRON	LINC01002	ENSG00000282508.2	ENST00000633199.1:ENST00000631832.1:ENST00000631772.1:ENST00000633151.1:ENST00000633674.1:ENST00000631644.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	2	31	2	2.29425	2.3777999999999997	2.46135	0.0518406	0.0374637	0.176696	0.140008
chr19	23923559	23923642	7043621	0	+	0.46988	(0.44,0.476]	chr19	702284	2	UTR3	UTR3:EXON_MRNA:INTRON	ZNF726	ENSG00000213967.12	ENST00000525354.6:ENST00000334589.9:ENST00000594466.6:ENST00000575986.1	protein_coding	protein_coding	protein_coding	protein_coding	2	31	2	2.29425	2.3777999999999997	2.46135	0.0518406	0.0374637	0.176696	0.140008
chr4	119433368	119433465	2230490	0	-	0.474227	(0.44,0.476]	chr4	218500	11	INTRON	INTRON	GTF2IP12	ENSG00000283050.3	ENST00000651444.1:ENST00000634317.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	2	31	2	2.29425	2.3777999999999997	2.46135	0.0518406	0.0374637	0.176696	0.140008
chr6	47553946	47554045	2874331	0	+	0.474747	(0.44,0.476]	chr6	272743	89	INTRON	INTRON	CD2AP	ENSG00000198087.7	ENST00000359314.5	protein_coding	protein_coding	protein_coding	protein_coding	2	31	2	2.29425	2.3777999999999997	2.46135	0.0518406	0.0374637	0.176696	0.140008
chr8	140630716	140630816	4076518	0	-	0.46	(0.44,0.476]	chr8	370289	35	INTRON	INTRON	AGO2	ENSG00000123908.12	ENST00000220592.10:ENST00000519980.5:ENST00000523609.5:ENST00000517293.5:ENST00000518019.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	31	2	2.29425	2.3777999999999997	2.46135	0.0518406	0.0374637	0.176696	0.140008
chr5	131768751	131768851	2720462	0	-	0.34	(0.32,0.35]	chr5	255730	237	INTRON	INTRON	FNIP1	ENSG00000217128.13	ENST00000510461.6:ENST00000307954.12:ENST00000307968.11:ENST00000511848.1	protein_coding	protein_coding	protein_coding	protein_coding	6	96	2	1.8903	2.3777500000000003	2.8652	0.0298043	4.9686e-4	0.129138	0.0201536
chr10	28556638	28556738	4414040	0	+	0.35	(0.32,0.35]	chr10	407148	182	INTRON	INTRON	WAC	ENSG00000095787.24	ENST00000680735.1:ENST00000375664.8:ENST00000428935.6:ENST00000651598.1:ENST00000628285.3:ENST00000681112.1:ENST00000679570.1:ENST00000375646.5:ENST00000354911.9:ENST00000347934.8:ENST00000420266.6:ENST00000651885.1:ENST00000651441.1:ENST00000679398.1:ENST00000424454.5:ENST00000442148.6:ENST00000448193.5:ENST00000414108.6:ENST00000679428.1:ENST00000439676.5:ENST00000345541.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	135	2	2.27939	2.3777299999999997	2.47607	0.00844518	4.33103e-4	0.0776969	0.0186938
chrX	74263621	74263720	7841314	0	-	0.282828	(0.28,0.32]	chrX	799728	12	INTRON	INTRON	FTX	ENSG00000230590.12	ENST00000603672.5:ENST00000430772.6:ENST00000602776.6:ENST00000638681.1:ENST00000652319.1:ENST00000661133.1:ENST00000652071.1:ENST00000602812.6:ENST00000651703.1:ENST00000653018.1:ENST00000658448.1:ENST00000662240.1:ENST00000652527.1:ENST00000651451.1:ENST00000657611.1:ENST00000660481.1:ENST00000659574.1:ENST00000661084.1:ENST00000662494.1:ENST00000670936.1:ENST00000602420.6:ENST00000658203.1:ENST00000638985.1:ENST00000691187.1:ENST00000603037.2:ENST00000687056.1:ENST00000654870.2:ENST00000652540.1:ENST00000652331.2:ENST00000652013.1:ENST00000657070.1:ENST00000665069.1:ENST00000651936.1:ENST00000652496.1:ENST00000653874.2:ENST00000661335.1:ENST00000664123.1:ENST00000658439.1:ENST00000666535.1:ENST00000652970.1:ENST00000423992.3:ENST00000665313.2:ENST00000651140.1:ENST00000660100.1:ENST00000693483.1:ENST00000656041.1:ENST00000657327.1:ENST00000664343.1:ENST00000656977.1:ENST00000671343.1:ENST00000659407.1:ENST00000671067.1:ENST00000660829.1:ENST00000671385.1	lncRNA	lncRNA	lncRNA	lncRNA	7	109	2	1.63866	2.377695	3.11673	0.0317527	6.61685e-4	0.13151	0.0232856
chr12	110402129	110402229	5409183	0	-	0.41	(0.408,0.44]	chr12	516463	53	INTRON	INTRON	ANAPC7:ENSG00000258210	ENSG00000196510.14:ENSG00000258210.1	ENST00000455511.9:ENST00000450008.3:ENST00000552170.2:ENST00000550231.1:ENST00000464697.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay	15	194	2	2.29916	2.3776349999999997	2.45611	6.47054e-4	2.37558e-4	0.023266	0.0136195
chr5	163518661	163518761	2531620	0	+	0.3	(0.28,0.32]	chr5	242293	4	UTR3	UTR3:EXON_MRNA	MAT2B	ENSG00000038274.18	ENST00000280969.9:ENST00000694938.1:ENST00000694939.1:ENST00000694940.1:ENST00000694943.1:ENST00000694942.1:ENST00000694946.1:ENST00000694947.1:ENST00000694945.1:ENST00000421814.7:ENST00000520449.2:ENST00000694952.1:ENST00000518095.5:ENST00000694953.1:ENST00000321757.11:ENST00000694954.1:ENST00000694955.1:ENST00000695024.1:ENST00000523606.1:ENST00000695025.1:ENST00000695026.1:ENST00000695027.1:ENST00000695028.1:ENST00000695029.1:ENST00000695032.1:ENST00000695034.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	52	2	2.0243	2.377535	2.73077	0.0364967	0.0220748	0.153759	0.115395
chr15	89173113	89173213	6095421	0	+	0.35	(0.32,0.35]	chr15	580015	172	INTRON	INTRON	ABHD2	ENSG00000140526.18	ENST00000565973.5:ENST00000352732.10:ENST00000562073.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	49	2	2.04237	2.37753	2.71269	0.0375542	0.0181461	0.140222	0.114853
chr12	6509016	6509116	5069369	0	+	0.35	(0.32,0.35]	chr12	478656	134	INTRON	INTRON	NCAPD2	ENSG00000010292.13	ENST00000541399.1:ENST00000539714.5:ENST00000382457.8:ENST00000539084.5:ENST00000315579.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	93	2	2.22429	2.37746	2.53063	0.0226421	0.00105397	0.117557	0.0299229
chr6	17658772	17658871	3065721	0	-	0.424242	(0.408,0.44]	chr6	284824	65	INTRON	INTRON	NUP153	ENSG00000124789.12	ENST00000613258.4:ENST00000537253.5:ENST00000262077.3	protein_coding	protein_coding	protein_coding	protein_coding	11	139	2	2.3683	2.3773850000000003	2.38647	0.00234575	3.96367e-4	0.0434875	0.0178651
chr8	123073931	123074029	3850238	0	+	0.510204	(0.476,0.515]	chr8	354655	1	INTRON	INTRON	TBC1D31	ENSG00000156787.17	ENST00000520368.5:ENST00000519418.5:ENST00000287380.6:ENST00000522420.5:ENST00000327098.9:ENST00000518099.5:ENST00000521676.5:ENST00000524307.5:ENST00000522276.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	42	2	2.3223	2.37736	2.43242	0.0519312	0.0091895	0.159306	0.0855292
chr2	126659763	126659863	862045	0	+	0.41	(0.408,0.44]	chr2	96613	11	INTRON	INTRON	GYPC	ENSG00000136732.16	ENST00000459787.1:ENST00000259254.9:ENST00000409836.3:ENST00000356887.12	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	129	2	1.52464	2.377205	3.22977	0.0205892	5.1576e-5	0.110999	0.00585477
chr22	21425337	21425437	7481252	0	+	0.45	(0.44,0.476]	chr22	763209	42	INTRON	INTRON	HIC2	ENSG00000169635.10	ENST00000407464.7:ENST00000407598.2	protein_coding	protein_coding	protein_coding	protein_coding	6	63	2	1.40212	2.377195	3.35227	0.0524678	0.0022005699999999998	0.178047	0.0417893
chr12	122103760	122103860	5240112	0	+	0.45	(0.44,0.476]	chr12	497496	241	INTRON	INTRON	MLXIP	ENSG00000175727.14	ENST00000319080.12	protein_coding	protein_coding	protein_coding	protein_coding	6	65	2	1.892	2.377155	2.86231	0.012214	0.00935701	0.0910127	0.0858596
chr1	20762304	20762403	389609	0	-	0.383838	(0.378,0.408]	chr1	46537	47	INTRON	INTRON	HP1BP3	ENSG00000127483.19	ENST00000438032.6:ENST00000312239.10:ENST00000375003.6:ENST00000419948.5:ENST00000424732.5	protein_coding	protein_coding	protein_coding	protein_coding	7	88	2	2.01851	2.37704	2.73557	0.00559022	0.00360869	0.0678837	0.0533855
chr1	193043048	193043148	612705	0	-	0.41	(0.408,0.44]	chr1	72474	130	INTRON	INTRON	UCHL5	ENSG00000116750.14	ENST00000367455.8:ENST00000367454.6:ENST00000367450.7:ENST00000367451.8:ENST00000367449.5:ENST00000367448.5:ENST00000421683.1	protein_coding	protein_coding	protein_coding	protein_coding	4	56	2	2.05947	2.37702	2.69457	0.0333232	0.00331036	0.134145	0.0527031
chr19	53077812	53077912	7210306	0	-	0.26	[0,0.28]	chr19	731875	4	SS3_PROX	SS3_PROX:INTRON	ZNF160	ENSG00000170949.18	ENST00000599056.5:ENST00000418871.5:ENST00000429604.5:ENST00000683776.1:ENST00000599247.5:ENST00000601982.5:ENST00000355147.9:ENST00000599729.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	44	2	2.36637	2.37697	2.38757	0.0552962	0.0500615	0.17488	0.165463
chr7	129013388	129013487	3636163	0	-	0.212121	[0,0.28]	chr7	338122	79	INTRON	INTRON	TNPO3	ENSG00000064419.14	ENST00000627585.2:ENST00000265388.10:ENST00000471234.5:ENST00000482320.5:ENST00000471166.1	protein_coding	protein_coding	protein_coding	protein_coding	2	44	2	2.36637	2.37697	2.38757	0.0552962	0.0500615	0.17488	0.165463
chr22	21508046	21508145	7560171	0	-	0.444444	(0.44,0.476]	chr22	773318	156	INTRON	INTRON	PI4KAP2	ENSG00000183506.17	ENST00000450651.5:ENST00000467443.5:ENST00000479693.1:ENST00000476537.1:ENST00000491562.5	transcribed_unitary_pseudogene	retained_intron	transcribed_unitary_pseudogene	retained_intron:processed_transcript	12	154	2	2.17542	2.3769400000000003	2.57846	0.00224408	1.86806e-4	0.0424375	0.0119273
chr9	131143180	131143280	4215804	0	+	0.51	(0.476,0.515]	chr9	386555	3	INTRON	INTRON	NUP214	ENSG00000126883.19	ENST00000695497.1:ENST00000695498.1:ENST00000695496.1:ENST00000695495.1:ENST00000695494.1:ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000525561.2:ENST00000651022.1:ENST00000695499.1:ENST00000530863.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	70	864	2	2.35395	2.3768450000000003	2.39974	2.95904e-5	7.13889e-6	0.00451038	0.00189435
chrX	113933799	113933899	7867377	0	-	0.36	(0.35,0.378]	chrX	801544	3176	EXON_LNCRNA	EXON_LNCRNA:INTRON	XACT	ENSG00000241743.4	ENST00000468762.3:ENST00000674361.1	lncRNA	lncRNA	lncRNA	lncRNA	5	77	2	2.34278	2.37683	2.41088	0.0129593	0.0047981	0.0991015	0.0602209
chr17	76448128	76448228	6843076	0	-	0.51	(0.476,0.515]	chr17	676846	422	INTRON	INTRON	UBE2O	ENSG00000175931.13	ENST00000319380.12:ENST00000586409.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	55	2	2.21677	2.37674	2.53671	0.0207026	0.00624027	0.110999	0.0718843
chr6	160028289	160028384	3023564	0	+	0.421053	(0.408,0.44]	chr6	282043	6	INTRON	INTRON	IGF2R	ENSG00000197081.16	ENST00000676781.1:ENST00000677704.1:ENST00000356956.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	56	2	2.36185	2.376735	2.39162	0.0133164	0.0105837	0.094512	0.0911864
chr7	128036308	128036408	3406270	0	+	0.46	(0.44,0.476]	chr7	318194	278	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000486037.1:ENST00000484767.5:ENST00000470723.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	41	2	2.14573	2.376735	2.60774	0.0255874	0.0238593	0.129075	0.120269
chr5	159192320	159192420	2759014	0	-	0.41	(0.408,0.44]	chr5	260356	99	INTRON	INTRON	RNF145	ENSG00000145860.12	ENST00000424310.7:ENST00000519865.5:ENST00000274542.6:ENST00000611185.4:ENST00000521606.6:ENST00000518802.5:ENST00000520638.1:ENST00000520548.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	50	2	2.03431	2.37671	2.71911	0.0189489	0.0154896	0.108998	0.108861
chr2	188266531	188266631	1295186	0	-	0.31	(0.28,0.32]	chr2	135671	376	INTRON	INTRON	LINC01090	ENSG00000231689.3	ENST00000434418.2:ENST00000632331.1:ENST00000415357.1	lncRNA	lncRNA	lncRNA	lncRNA	6	104	2	1.93544	2.376665	2.81789	0.0276828	7.16126e-4	0.123904	0.0244108
chr1	52470059	52470158	457719	0	-	0.444444	(0.44,0.476]	chr1	55012	14	INTRON	INTRON	TUT4	ENSG00000134744.14	ENST00000371544.7:ENST00000257177.9:ENST00000528642.5:ENST00000484723.6:ENST00000371541.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	41	2	2.0776	2.37666	2.67572	0.0292951	0.0212064	0.141862	0.113017
chr1	212774671	212774771	634609	0	-	0.47	(0.44,0.476]	chr1	74955	80	INTRON	INTRON	NSL1	ENSG00000117697.15	ENST00000366977.8:ENST00000366978.5:ENST00000366976.3:ENST00000626725.1	protein_coding	protein_coding	protein_coding	protein_coding	3	41	2	2.0776	2.37666	2.67572	0.0292951	0.0212064	0.141862	0.113017
chr12	31977897	31977996	5106789	0	+	0.464646	(0.44,0.476]	chr12	482333	72	INTRON	INTRON	RESF1	ENSG00000174718.12	ENST00000541981.5:ENST00000540924.5:ENST00000312561.9:ENST00000535596.5:ENST00000397578.7:ENST00000381054.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	41	2	2.0776	2.37666	2.67572	0.0292951	0.0212064	0.141862	0.113017
chr9	136416763	136416856	4221350	0	+	0.430108	(0.408,0.44]	chr9	387534	5	EXON_MRNA	EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PMPCA	ENSG00000165688.12	ENST00000612553.4:ENST00000371717.8:ENST00000622209.4:ENST00000399219.7:ENST00000620895.1:ENST00000462616.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	77	2	1.92871	2.3766599999999998	2.82461	0.0127189	0.00241819	0.0986242	0.0442901
chr7	158772940	158773040	3689241	0	-	0.26	[0,0.28]	chr7	342388	2	SS5_PROX	SS5_PROX:INTRON	ESYT2	ENSG00000117868.18	ENST00000251527.10:ENST00000275418.13:ENST00000652148.1	protein_coding	protein_coding	protein_coding	protein_coding	5	99	2	1.66484	2.376655	3.08847	0.0617844	9.38838e-4	0.174281	0.0280123
chr6	31534986	31535081	3078767	0	-	0.589474	(0.57,1]	chr6	286741	6	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	DDX39B	ENSG00000198563.14	ENST00000458640.5:ENST00000462256.5:ENST00000376177.6:ENST00000484566.5:ENST00000396172.6:ENST00000482195.5:ENST00000431908.5:ENST00000481456.1:ENST00000427214.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	31	196	2	2.11498	2.376645	2.63831	8.83914e-5	1.91422e-6	0.00842626	8.42932e-4
chr21	29339318	29339418	7392760	0	+	0.33	(0.32,0.35]	chr21	753205	93	INTRON	INTRON	BACH1	ENSG00000156273.16	ENST00000286800.8:ENST00000399921.5:ENST00000422809.5:ENST00000468059.1	protein_coding	protein_coding	protein_coding	protein_coding	4	58	2	1.67393	2.37664	3.07935	0.0496128	0.00724137	0.174685	0.0729826
chr14	30702101	30702198	5675860	0	+	0.391753	(0.378,0.408]	chr14	540728	20	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	SCFD1	ENSG00000092108.22	ENST00000678760.1:ENST00000677690.1:ENST00000678124.1:ENST00000678716.1:ENST00000678402.1:ENST00000679153.1:ENST00000678516.1:ENST00000678802.1:ENST00000679096.1:ENST00000679102.1:ENST00000678475.1:ENST00000676509.1:ENST00000676750.1:ENST00000679165.1:ENST00000676658.1:ENST00000678399.1:ENST00000678185.1:ENST00000677027.1:ENST00000677413.1:ENST00000555259.5:ENST00000554437.6:ENST00000676834.1:ENST00000678858.1:ENST00000553693.6:ENST00000676914.1:ENST00000676465.1:ENST00000676812.1:ENST00000678669.1:ENST00000676520.1:ENST00000676876.1:ENST00000677617.1:ENST00000676954.1:ENST00000677456.1:ENST00000678735.1:ENST00000679342.1:ENST00000678637.1:ENST00000677176.1:ENST00000557076.6:ENST00000677637.1:ENST00000677974.1:ENST00000458591.7:ENST00000484733.6:ENST00000556768.5:ENST00000544052.6:ENST00000463622.6:ENST00000676674.1:ENST00000677340.1:ENST00000311943.11:ENST00000679075.1:ENST00000678396.1:ENST00000676473.1:ENST00000396629.6:ENST00000678579.1:ENST00000678104.1:ENST00000554486.1:ENST00000676817.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	32	2	2.36428	2.376505	2.38873	0.0458857	0.0441088	0.162255	0.149888
chr16	1744857	1744956	6275853	0	+	0.181818	[0,0.28]	chr16	599574	15	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	MAPK8IP3	ENSG00000138834.15	ENST00000685674.1:ENST00000250894.8:ENST00000673691.1:ENST00000356010.9:ENST00000610761.2:ENST00000564098.5:ENST00000561765.1:ENST00000568271.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	82	2	1.77685	2.376505	2.97616	0.0259533	0.0128425	0.133676	0.0926667
chr16	23902148	23902248	6324422	0	+	0.4	(0.378,0.408]	chr16	605701	84	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000498739.1	protein_coding	protein_coding	protein_coding	protein_coding	2	32	2	2.36428	2.376505	2.38873	0.0458857	0.0441088	0.162255	0.149888
chr19	32458350	32458429	7049303	0	+	0.392405	(0.378,0.408]	chr19	702866	1	CDS	CDS:EXON_MRNA	DPY19L3	ENSG00000178904.19	ENST00000392250.7:ENST00000586987.5:ENST00000342179.9:ENST00000585597.5:ENST00000588648.7:ENST00000592142.5:ENST00000592832.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	32	2	2.36428	2.376505	2.38873	0.0458857	0.0441088	0.162255	0.149888
chr2	159614993	159615093	1252520	0	-	0.4	(0.378,0.408]	chr2	132737	2	SS5_PROX	SS5_PROX:INTRON	BAZ2B	ENSG00000123636.19	ENST00000392782.5:ENST00000392783.7:ENST00000541068.6:ENST00000437839.5:ENST00000483316.1:ENST00000552327.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	32	2	2.36428	2.376505	2.38873	0.0458857	0.0441088	0.162255	0.149888
chr2	197940473	197940573	970461	0	+	0.4	(0.378,0.408]	chr2	104858	1298	INTRON	INTRON	PLCL1	ENSG00000115896.16	ENST00000428675.6:ENST00000435320.1:ENST00000487695.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	32	2	2.36428	2.376505	2.38873	0.0458857	0.0441088	0.162255	0.149888
chr6	3005513	3005604	2787907	0	+	0.395604	(0.378,0.408]	chr6	263236	5	INTRON	INTRON	NQO2	ENSG00000124588.22	ENST00000426637.5:ENST00000380472.7:ENST00000380455.11:ENST00000397717.7:ENST00000338130.7:ENST00000380441.5:ENST00000380454.8:ENST00000380430.6:ENST00000606474.1	protein_coding	protein_coding	protein_coding	protein_coding	2	32	2	2.36428	2.376505	2.38873	0.0458857	0.0441088	0.162255	0.149888
chr2	171541793	171541893	917523	0	+	0.25	[0,0.28]	chr2	101042	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	CYBRD1	ENSG00000071967.12	ENST00000409484.5:ENST00000468308.1:ENST00000321348.9:ENST00000375252.3:ENST00000445146.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	99	2	2.17149	2.37643	2.58137	0.0308079	0.00250515	0.13151	0.0464447
chr7	139387726	139387825	3437874	0	+	0.343434	(0.32,0.35]	chr7	320340	112	INTRON	INTRON	LUC7L2:FMC1-LUC7L2	ENSG00000146963.18:ENSG00000269955.2	ENST00000541170.7:ENST00000541515.3:ENST00000608368.5:ENST00000619796.4:ENST00000354926.9:ENST00000456182.5:ENST00000263545.7:ENST00000463912.5:ENST00000498518.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	153	2	2.04388	2.37641	2.70894	0.00723443	2.09497e-4	0.0729826	0.0126414
chr14	52641395	52641494	5894511	0	-	0.444444	(0.44,0.476]	chr14	559768	16	UTR3	UTR3:EXON_MRNA	ERO1A	ENSG00000197930.13	ENST00000395686.8	protein_coding	protein_coding	protein_coding	protein_coding	10	127	2	1.92652	2.3764000000000003	2.82628	0.00669501	1.78564e-4	0.0707084	0.0116619
chr7	119893002	119893102	3630271	0	-	0.26	[0,0.28]	chr7	337335	918	INTRON	INTRON	LINC02476	ENSG00000225546.6	ENST00000660268.1:ENST00000431071.5:ENST00000426413.2	lncRNA	lncRNA	lncRNA	lncRNA	6	118	2	2.05547	2.37639	2.69731	0.0218514	0.00153564	0.11491	0.0362144
chr1	23025306	23025405	43816	0	+	0.383838	(0.378,0.408]	chr1	5252	50	INTRON	INTRON	KDM1A	ENSG00000004487.18	ENST00000692214.1:ENST00000686934.1:ENST00000689853.1:ENST00000465864.2:ENST00000691256.1:ENST00000688122.1:ENST00000692056.1:ENST00000692853.1:ENST00000689366.1:ENST00000686270.1:ENST00000685102.1:ENST00000690627.1:ENST00000686771.1:ENST00000692209.1:ENST00000686339.1:ENST00000691813.1:ENST00000693156.1:ENST00000688235.1:ENST00000692975.1:ENST00000687202.1:ENST00000691682.1:ENST00000691404.1:ENST00000691694.1:ENST00000688680.1:ENST00000356634.7:ENST00000400181.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	82	2	1.2437	2.376385	3.50907	0.049286	0.00127828	0.174117	0.0326395
chr5	54091747	54091847	2618724	0	-	0.47	(0.44,0.476]	chr5	248841	158	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	14	177	2	2.26969	2.37638	2.48307	4.91692e-4	4.82241e-4	0.0205724	0.0199261
chr2	178509576	178509675	930841	0	+	0.414141	(0.408,0.44]	chr2	102252	58	UTR3	UTR3:EXON_MRNA	PLEKHA3	ENSG00000116095.11	ENST00000234453.10	protein_coding	protein_coding	protein_coding	protein_coding	4	50	2	1.69566	2.3763549999999998	3.05705	0.0453922	0.00658331	0.164236	0.0701901
chr3	44789453	44789552	1412502	0	+	0.292929	(0.28,0.32]	chr3	148187	25	INTRON	INTRON	KIF15	ENSG00000163808.17	ENST00000438321.5:ENST00000326047.9:ENST00000481166.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	39	2	2.29724	2.3763449999999997	2.45545	0.0554156	0.0438092	0.18407	0.14901
chr20	49942975	49943070	7285712	0	+	0.305263	(0.28,0.32]	chr20	741191	9	INTRON	INTRON	RNF114	ENSG00000124226.11	ENST00000623528.3:ENST00000622999.3:ENST00000244061.6:ENST00000625177.3:ENST00000623732.3:ENST00000622920.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	118	2	1.85559	2.376335	2.89708	0.00894463	0.00257346	0.0849778	0.0451443
chr4	108626446	108626546	2018350	0	+	0.47	(0.44,0.476]	chr4	200707	8	INTRON	INTRON	RPL34	ENSG00000109475.17	ENST00000394668.2	protein_coding	protein_coding	protein_coding	protein_coding	6	83	2	2.36262	2.376325	2.39003	0.0106488	0.00255041	0.0915714	0.0449067
chr7	77549684	77549784	3342137	0	+	0.42	(0.408,0.44]	chr7	311312	35	INTRON	INTRON	PTPN12	ENSG00000127947.16	ENST00000248594.11:ENST00000460731.5:ENST00000523952.5:ENST00000433369.6:ENST00000415482.6:ENST00000435495.6:ENST00000418110.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	80	2	1.38093	2.376275	3.37162	0.0305221	0.00208674	0.143385	0.0411801
chr7	128459612	128459711	3406890	0	+	0.50505	(0.476,0.515]	chr7	318259	13	INTRON	INTRON	ENSG00000273184	ENSG00000273184.1	ENST00000462662.1	lncRNA	lncRNA	lncRNA	lncRNA	7	84	2	1.87849	2.376275	2.87406	0.00992862	0.00188729	0.0877296	0.0391691
chr16	88661531	88661626	6539313	0	-	0.389474	(0.378,0.408]	chr16	633758	3	INTRON	INTRON	MVD	ENSG00000167508.12	ENST00000301012.8:ENST00000569177.5:ENST00000567064.5:ENST00000568133.5:ENST00000563785.5:ENST00000568709.5:ENST00000563170.5:ENST00000565610.5:ENST00000563463.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	116	2	1.77299	2.37623	2.97947	0.0129546	2.2808e-4	0.0931124	0.0133228
chr17	29414194	29414293	6585874	0	+	0.414141	(0.408,0.44]	chr17	640377	102	INTRON	INTRON	TAOK1	ENSG00000160551.12	ENST00000261716.8:ENST00000583121.5:ENST00000587277.1:ENST00000536202.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	42	2	2.36073	2.376175	2.39162	0.0481658	0.0105837	0.153019	0.0911864
chr5	36912765	36912865	2338790	0	+	0.42	(0.408,0.44]	chr5	225949	264	INTRON	INTRON	NIPBL	ENSG00000164190.19	ENST00000282516.13:ENST00000448238.2:ENST00000652901.1	protein_coding	protein_coding	protein_coding	protein_coding	3	42	2	2.36073	2.376175	2.39162	0.0481658	0.0105837	0.153019	0.0911864
chr4	78896659	78896759	1982611	0	+	0.2	[0,0.28]	chr4	198558	90	INTRON	INTRON	BMP2K	ENSG00000138756.19	ENST00000502613.3	protein_coding	protein_coding	protein_coding	protein_coding	5	99	2	2.02929	2.37615	2.72301	0.0189138	0.00593154	0.118303	0.0674604
chr17	44176356	44176453	6778921	0	-	0.42268	(0.408,0.44]	chr17	668261	5	EXON_LNCRNA	EXON_LNCRNA	ASB16-AS1	ENSG00000267080.7	ENST00000588785.6:ENST00000585457.6:ENST00000618557.1:ENST00000591166.1:ENST00000667684.1:ENST00000669052.1:ENST00000656516.1:ENST00000667107.1	lncRNA	lncRNA	lncRNA	lncRNA	11	146	2	2.30496	2.37613	2.4473	0.0013419	8.59973e-4	0.0336974	0.0267527
chr7	158784026	158784126	3689353	0	-	0.6	(0.57,1]	chr7	342393	103	INTRON	INTRON	ESYT2	ENSG00000117868.18	ENST00000251527.10:ENST00000275418.13:ENST00000652148.1:ENST00000483958.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	52	2	1.54289	2.37603	3.20917	0.0196542	2.02775e-4	0.120063	0.0129814
chr15	68779210	68779307	6214546	0	-	0.340206	(0.32,0.35]	chr15	592987	8	UTR3	UTR3:EXON_MRNA	ANP32A	ENSG00000140350.15	ENST00000465139.6:ENST00000409628.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	133	2	1.34281	2.3760250000000003	3.40924	0.0321748	2.40793e-4	0.145026	0.014263
chr15	58012448	58012548	6187003	0	-	0.38	(0.378,0.408]	chr15	589767	3	SS3_PROX	SS3_PROX:INTRON	ALDH1A2	ENSG00000128918.15	ENST00000537372.5:ENST00000249750.9:ENST00000347587.7:ENST00000430119.6:ENST00000558231.5:ENST00000559517.5:ENST00000559266.5:ENST00000561070.5:ENST00000558595.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	43	2	1.76032	2.37601	2.9917	0.0721577	0.0068789	0.187433	0.0749442
chr17	31877362	31877459	6752665	0	-	0.391753	(0.378,0.408]	chr17	663753	16	INTRON	INTRON	UTP6	ENSG00000108651.10	ENST00000261708.9:ENST00000477128.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	43	2	1.76032	2.37601	2.9917	0.0721577	0.0068789	0.187433	0.0749442
chr3	43498722	43498822	1674201	0	-	0.43	(0.408,0.44]	chr3	170972	656	INTRON	INTRON	ANO10	ENSG00000160746.13	ENST00000292246.8:ENST00000350459.8:ENST00000396091.7:ENST00000414522.6:ENST00000451430.6:ENST00000448045.1	protein_coding	protein_coding	protein_coding	protein_coding	8	93	2	1.92735	2.3759799999999998	2.82461	0.00550465	0.00241819	0.0672816	0.0442901
chr2	32278634	32278734	730389	0	+	0.39	(0.378,0.408]	chr2	84235	4	SS5_PROX	SS5_PROX:INTRON	YIPF4	ENSG00000119820.11	ENST00000238831.9:ENST00000495355.1:ENST00000437765.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	43	2	1.8252	2.375925	2.92665	0.0619563	0.0086017	0.174514	0.083729
chr5	32140661	32140761	2597178	0	-	0.39	(0.378,0.408]	chr5	246738	46	INTRON	INTRON	GOLPH3	ENSG00000113384.14	ENST00000265070.7:ENST00000503610.5:ENST00000512668.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	43	2	1.8252	2.375925	2.92665	0.0619563	0.0086017	0.174514	0.083729
chr15	78879144	78879240	6069605	0	+	0.583333	(0.57,1]	chr15	578198	5	INTRON	INTRON	MORF4L1	ENSG00000185787.15	ENST00000379535.8:ENST00000559697.5:ENST00000331268.9:ENST00000557961.5:ENST00000559930.5:ENST00000426013.7:ENST00000558746.5:ENST00000558893.5:ENST00000558830.5:ENST00000558522.5:ENST00000559619.5:ENST00000559345.5:ENST00000561171.5:ENST00000558502.5:ENST00000559258.5:ENST00000559690.5:ENST00000559158.5:ENST00000560422.5:ENST00000558539.5:ENST00000559244.5:ENST00000559751.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	35	2	2.1643	2.3758150000000002	2.58733	0.00941704	0.00454222	0.0861183	0.0595107
chr22	19932461	19932553	7556233	0	-	0.597826	(0.57,1]	chr22	772564	2	UTR5	UTR5:EXON_MRNA:INTRON	TXNRD2	ENSG00000184470.21	ENST00000400518.5:ENST00000542719.6:ENST00000474308.5:ENST00000400525.6:ENST00000400521.7:ENST00000400519.6:ENST00000491939.6:ENST00000334363.14:ENST00000496729.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	35	2	2.1643	2.3758150000000002	2.58733	0.00941704	0.00454222	0.0861183	0.0595107
chr12	98600227	98600327	5199056	0	+	0.5	(0.476,0.515]	chr12	491875	1	SS5_PROX	SS5_PROX:INTRON	SLC25A3	ENSG00000075415.15	ENST00000401722.7:ENST00000188376.9:ENST00000551917.5:ENST00000546766.5:ENST00000228318.8:ENST00000552981.6:ENST00000551123.5:ENST00000549338.5:ENST00000548847.1:ENST00000548480.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	15	180	2	2.03071	2.375745	2.72078	0.00124467	3.2753e-4	0.0322969	0.0160995
chr12	53455688	53455784	5142923	0	+	0.416667	(0.408,0.44]	chr12	485388	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PCBP2	ENSG00000197111.16	ENST00000546463.6:ENST00000437231.5:ENST00000447282.5:ENST00000359282.9:ENST00000549863.5:ENST00000359462.9:ENST00000550520.6:ENST00000552296.6:ENST00000550192.5:ENST00000551104.5:ENST00000552819.5:ENST00000550910.1:ENST00000455667.7:ENST00000439930.7:ENST00000548933.5:ENST00000546652.6:ENST00000562264.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	53	2	2.00629	2.3757349999999997	2.74518	0.0189661	0.0152229	0.108861	0.108535
chr2	73069759	73069859	1155952	0	-	0.37	(0.35,0.378]	chr2	123526	107	INTRON	INTRON	SFXN5	ENSG00000144040.13	ENST00000272433.7:ENST00000411783.5:ENST00000410065.5:ENST00000416579.5:ENST00000450185.5:ENST00000442582.1:ENST00000497144.5:ENST00000479293.5:ENST00000485057.5:ENST00000475630.5:ENST00000472259.5:ENST00000484123.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	73	2	2.03027	2.3756	2.72093	0.0185322	0.00314173	0.108861	0.0514466
chr19	46785355	46785454	7195393	0	-	0.494949	(0.476,0.515]	chr19	729004	4	INTRON	INTRON	SLC1A5	ENSG00000105281.12	ENST00000542575.6:ENST00000412532.6	protein_coding	protein_coding	protein_coding	protein_coding	13	163	2	1.97465	2.3755800000000002	2.77651	0.00238015	1.66129e-4	0.0449397	0.0118127
chr12	123293107	123293207	5444458	0	-	0.42	(0.408,0.44]	chr12	520952	41	UTR3	UTR3:EXON_MRNA	SBNO1	ENSG00000139697.14	ENST00000602398.3:ENST00000267176.8:ENST00000420886.6	protein_coding	protein_coding	protein_coding	protein_coding	5	57	2	1.79818	2.3755699999999997	2.95296	0.020428	0.00929354	0.122109	0.0817766
chr21	39298782	39298882	7465394	0	-	0.3	(0.28,0.32]	chr21	760567	2	SS3_PROX	SS3_PROX:INTRON	BRWD1	ENSG00000185658.14	ENST00000333229.6:ENST00000342449.8:ENST00000380800.7:ENST00000341322.4:ENST00000470108.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	94	2	1.38258	2.375565	3.36855	0.039453	0.00305882	0.161534	0.0494118
chr17	44182700	44182798	6778986	0	-	0.530612	(0.515,0.57]	chr17	668271	12	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	ASB16-AS1	ENSG00000267080.7	ENST00000588785.6:ENST00000585457.6:ENST00000591166.1:ENST00000667684.1:ENST00000669052.1:ENST00000656516.1:ENST00000667107.1:ENST00000592897.1	lncRNA	lncRNA	lncRNA	lncRNA	4	44	2	1.91916	2.37552	2.83188	0.0231902	0.0108207	0.118148	0.0920575
chr2	61321410	61321509	1129035	0	-	0.414141	(0.408,0.44]	chr2	121386	17	INTRON	INTRON	USP34	ENSG00000115464.15	ENST00000398571.7	protein_coding	protein_coding	protein_coding	protein_coding	5	58	2	1.96973	2.375475	2.78122	0.015812	0.0108773	0.101453	0.0923273
chr9	97518455	97518555	4171756	0	+	0.41	(0.408,0.44]	chr9	380069	163	INTRON	INTRON	TMOD1	ENSG00000136842.14	ENST00000395211.6:ENST00000259365.9	protein_coding	protein_coding	protein_coding	protein_coding	5	58	2	1.96973	2.375475	2.78122	0.015812	0.0108773	0.101453	0.0923273
chr6	27810937	27811028	2839010	0	+	0.351648	(0.35,0.378]	chr6	266438	6	UTR3	UTR3:EXON_MRNA	H3C10	ENSG00000278828.2	ENST00000369163.4	protein_coding	protein_coding	protein_coding	protein_coding	25	343	2	2.29897	2.375335	2.4517	4.09496e-4	4.35099e-5	0.0185903	0.00532287
chr15	78877960	78878060	6069592	0	+	0.33	(0.32,0.35]	chr15	578192	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MORF4L1	ENSG00000185787.15	ENST00000379535.8:ENST00000559697.5:ENST00000331268.9:ENST00000557961.5:ENST00000559930.5:ENST00000426013.7:ENST00000558746.5:ENST00000558893.5:ENST00000558830.5:ENST00000558522.5:ENST00000559619.5:ENST00000559345.5:ENST00000561171.5:ENST00000558502.5:ENST00000559258.5:ENST00000559690.5:ENST00000559158.5:ENST00000560422.5:ENST00000558539.5:ENST00000559244.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	48	2	2.30476	2.37528	2.4458	0.0425977	0.0151817	0.148082	0.108535
chr19	55022122	55022222	7100379	0	+	0.35	(0.32,0.35]	chr19	712212	147	INTRON	INTRON	GP6-AS1	ENSG00000267265.6	ENST00000593060.5:ENST00000586845.1	lncRNA	lncRNA	lncRNA	lncRNA	3	48	2	2.30476	2.37528	2.4458	0.0425977	0.0151817	0.148082	0.108535
chr3	185807259	185807359	1886171	0	-	0.35	(0.32,0.35]	chr3	188573	1086	INTRON	INTRON	IGF2BP2	ENSG00000073792.16	ENST00000382199.7:ENST00000346192.7:ENST00000457616.6:ENST00000421047.3:ENST00000461957.5:ENST00000493302.5:ENST00000466476.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	48	2	2.30476	2.37528	2.4458	0.0425977	0.0151817	0.148082	0.108535
chr2	32570892	32570991	733004	0	+	0.373737	(0.35,0.378]	chr2	84650	46	INTRON	INTRON	BIRC6	ENSG00000115760.15	ENST00000421745.7:ENST00000471232.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	69	2	1.71241	2.375275	3.03814	0.019274	0.00767003	0.119831	0.075364
chr12	130874925	130875018	5247122	0	+	0.451613	(0.44,0.476]	chr12	498944	2	SS5_PROX	SS5_PROX:INTRON	RAN	ENSG00000132341.12	ENST00000448750.7:ENST00000536606.5:ENST00000543796.6:ENST00000541630.5:ENST00000392369.6:ENST00000477395.5:ENST00000535090.5:ENST00000541679.7:ENST00000392367.4:ENST00000464211.6:ENST00000539498.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	106	2	2.29258	2.375135	2.45769	0.00279559	0.00166589	0.0488779	0.0369207
chr3	138819323	138819423	1831346	0	-	0.34	(0.32,0.35]	chr3	184062	224	INTRON	INTRON	PIK3CB	ENSG00000051382.9	ENST00000674063.1:ENST00000477593.5:ENST00000462898.5:ENST00000483968.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	78	2	1.8903	2.37502	2.85974	0.0298043	0.00186579	0.129138	0.0399675
chr12	27029059	27029159	5097759	0	+	0.33	(0.32,0.35]	chr12	481660	7	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	MED21	ENSG00000152944.9	ENST00000546323.5:ENST00000536503.5:ENST00000282892.4:ENST00000538186.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	66	2	1.80487	2.374985	2.9451	0.0210603	0.011051	0.122559	0.0873897
chr1	227251865	227251965	651053	0	-	0.15	[0,0.28]	chr1	77102	321	INTRON	INTRON	CDC42BPA	ENSG00000143776.20	ENST00000366766.8:ENST00000366769.7:ENST00000334218.9:ENST00000366767.7:ENST00000366764.8:ENST00000478573.6:ENST00000682551.1:ENST00000462553.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	59	2	2.10688	2.3749849999999997	2.64309	0.0308646	0.0307985	0.143385	0.13151
chr20	5608475	5608573	7312320	0	-	0.408163	(0.378,0.408]	chr20	744619	37	INTRON	INTRON	GPCPD1	ENSG00000125772.14	ENST00000379019.7:ENST00000481690.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	93	2	2.30628	2.374975	2.44367	0.0163339	7.28566e-4	0.101571	0.0245975
chr14	101765564	101765663	5818533	0	+	0.494949	(0.476,0.515]	chr14	551818	4	UTR3	UTR3:EXON_MRNA:INTRON	PPP2R5C	ENSG00000078304.20	ENST00000694906.1:ENST00000422945.6:ENST00000554442.5:ENST00000556068.5:ENST00000556260.6:ENST00000328724.9:ENST00000554504.1:ENST00000553890.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	91	1123	2	2.32333	2.374965	2.4266	2.54892e-5	4.27858e-6	0.0041665	0.00138797
chr7	148838496	148838595	3670302	0	-	0.343434	(0.32,0.35]	chr7	340616	11	INTRON	INTRON	EZH2	ENSG00000106462.12	ENST00000683292.1:ENST00000320356.7:ENST00000492143.5:ENST00000478654.5:ENST00000350995.6:ENST00000460911.5:ENST00000683744.1:ENST00000682317.1:ENST00000682263.1:ENST00000684300.1:ENST00000476773.5:ENST00000483967.5:ENST00000498186.5:ENST00000483012.1:ENST00000682401.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	61	2	2.37199	2.374965	2.37794	0.0498601	0.00465833	0.156383	0.0629753
chr7	102377316	102377414	3371212	0	+	0.397959	(0.378,0.408]	chr7	315442	6	INTRON	INTRON	PRKRIP1:ENSG00000239969	ENSG00000128563.13:ENSG00000239969.6	ENST00000477886.5:ENST00000469763.5:ENST00000482549.5:ENST00000496391.5:ENST00000484974.5:ENST00000492837.1:ENST00000482465.5:ENST00000462601.5	protein_coding	protein_coding	protein_coding:transcribed_unprocessed_pseudogene	protein_coding:processed_transcript	5	70	2	2.13797	2.374925	2.61188	0.0124882	0.0047055	0.0923444	0.0631419
chr21	33545812	33545912	7397451	0	+	0.37	(0.35,0.378]	chr21	753505	2	SS3_PROX	SS3_PROX:INTRON	SON	ENSG00000159140.22	ENST00000356577.10:ENST00000381692.6:ENST00000475072.1:ENST00000695559.1:ENST00000455528.5:ENST00000300278.8:ENST00000381679.8:ENST00000492229.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	88	2	2.03027	2.3747999999999996	2.71933	0.0185322	9.31518e-4	0.108861	0.0278746
chr9	131134102	131134200	4215709	0	+	0.520408	(0.515,0.57]	chr9	386536	5	INTRON	INTRON	NUP214	ENSG00000126883.19	ENST00000695497.1:ENST00000695498.1:ENST00000695496.1:ENST00000695495.1:ENST00000695494.1:ENST00000695493.1:ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000525561.2:ENST00000651022.1:ENST00000695499.1:ENST00000530843.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	104	2	1.62864	2.374775	3.12091	0.0137628	1.0674e-4	0.10247	0.00924854
chr16	209310	209403	6425986	0	-	0.462366	(0.44,0.476]	chr16	617436	8	EXON_MRNA	EXON_MRNA:INTRON	LUC7L	ENSG00000007392.17	ENST00000337351.8:ENST00000426094.5:ENST00000397783.5:ENST00000629543.2:ENST00000490762.5:ENST00000293872.13:ENST00000464711.5:ENST00000419516.5:ENST00000397780.5:ENST00000418978.5:ENST00000430864.5:ENST00000443357.5:ENST00000494366.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	17	168	2	1.34325	2.37477	3.40629	0.0175555	3.1727e-5	0.11319	0.00471103
chr7	123732019	123732119	3632491	0	-	0.53	(0.515,0.57]	chr7	337581	224	INTRON	INTRON	WASL	ENSG00000106299.8	ENST00000223023.5	protein_coding	protein_coding	protein_coding	protein_coding	4	43	2	1.60221	2.374755	3.1473	0.0581855	0.00397184	0.188704	0.0549214
chr19	28493152	28493252	7166026	0	-	0.3	(0.28,0.32]	chr19	724189	249	INTRON	INTRON	ENSG00000283403:ENSG00000267243	ENSG00000283403.1:ENSG00000267243.6	ENST00000592347.5:ENST00000593065.5	lncRNA	lncRNA	lncRNA	lncRNA	20	300	2	2.01871	2.374745	2.73078	8.96203e-4	2.82354e-4	0.0273866	0.0154814
chr16	18157273	18157372	6454207	0	-	0.494949	(0.476,0.515]	chr16	621964	58	INTRON	INTRON	ENSG00000260242	ENSG00000260242.1	ENST00000563866.1	lncRNA	lncRNA	lncRNA	lncRNA	3	44	2	2.365	2.3747100000000003	2.38442	0.0417472	0.0128901	0.161736	0.0926667
chr2	144414310	144414410	1240731	0	-	0.48	(0.476,0.515]	chr2	131684	89	INTRON	INTRON	ZEB2	ENSG00000169554.23	ENST00000636471.1:ENST00000627532.3:ENST00000638128.1:ENST00000637304.1:ENST00000636179.1:ENST00000636820.1:ENST00000637045.1:ENST00000636413.1:ENST00000638007.1:ENST00000638087.1:ENST00000419938.5:ENST00000409487.7:ENST00000440875.6:ENST00000636732.2:ENST00000636026.2:ENST00000675069.1:ENST00000689298.1:ENST00000539609.7:ENST00000558170.6:ENST00000303660.8:ENST00000427902.5:ENST00000637267.2:ENST00000392861.6:ENST00000431672.4:ENST00000409211.5:ENST00000465308.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	105	2	2.31113	2.37467	2.43821	0.00258657	0.00177508	0.0469354	0.0378678
chr12	123234324	123234424	5242303	0	+	0.44	(0.408,0.44]	chr12	498146	4	SS5_PROX	SS5_PROX:INTRON	MTRFR	ENSG00000130921.9	ENST00000425637.3:ENST00000253233.6:ENST00000680325.1:ENST00000538888.6:ENST00000366329.7:ENST00000546132.2:ENST00000536130.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	43	2	2.16746	2.374625	2.58179	0.024638	0.024436	0.131869	0.12011
chr2	186497127	186497227	942923	0	+	0.3	(0.28,0.32]	chr2	103246	14	INTRON	INTRON	ZC3H15	ENSG00000065548.18	ENST00000421536.5:ENST00000337859.11:ENST00000437396.1:ENST00000481101.5:ENST00000468120.5:ENST00000496289.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	80	2	1.38068	2.374615	3.36855	0.0590236	0.00305882	0.189982	0.0494118
chr22	49559664	49559764	7601676	0	-	0.32	(0.28,0.32]	chr22	778566	1181	INTRON	INTRON	MIR3667HG	ENSG00000188511.13	ENST00000414287.5:ENST00000416411.1	lncRNA	lncRNA	lncRNA	lncRNA	6	80	2	1.38068	2.374615	3.36855	0.0590236	0.00305882	0.189982	0.0494118
chr2	235528638	235528738	1041683	0	+	0.49	(0.476,0.515]	chr2	111222	37	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1:ENST00000402604.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	154	2	2.28204	2.3745849999999997	2.46713	9.02946e-4	6.29989e-4	0.0278086	0.0226424
chr7	75186721	75186817	3557273	0	-	0.333333	(0.32,0.35]	chr7	331271	15	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GTF2IP1	ENSG00000277053.4	ENST00000618412.4:ENST00000622829.4:ENST00000621948.4	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript	5	79	2	1.69107	2.374575	3.05808	0.0517392	7.67153e-4	0.159306	0.0254532
chr22	20082160	20082258	7478248	0	+	0.55102	(0.515,0.57]	chr22	762700	11	INTRON	INTRON	DGCR8	ENSG00000128191.16	ENST00000383024.6:ENST00000351989.8:ENST00000457069.1	protein_coding	protein_coding	protein_coding	protein_coding	8	86	2	2.12079	2.37448	2.62817	0.004048	0.00233112	0.0578376	0.0432675
chr21	43799269	43799369	7413717	0	+	0.53	(0.515,0.57]	chr21	755644	3	SS3_PROX	SS3_PROX:INTRON	RRP1	ENSG00000160214.13	ENST00000497547.2:ENST00000467112.5:ENST00000471909.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	58	2	1.94493	2.374465	2.804	0.0204583	0.00215855	0.122204	0.0417866
chr18	13051549	13051645	6877191	0	+	0.541667	(0.515,0.57]	chr18	681436	13	INTRON	INTRON	CEP192	ENSG00000101639.19	ENST00000325971.12:ENST00000506447.5:ENST00000589596.5:ENST00000513432.5:ENST00000511820.6:ENST00000510237.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	57	2	2.06758	2.37445	2.68132	0.0140038	0.00324198	0.0959618	0.0524329
chr6	166953328	166953426	3264289	0	-	0.408163	(0.378,0.408]	chr6	303043	9	EXON_MRNA	EXON_MRNA:INTRON	ENSG00000249141:RNASET2	ENSG00000249141.1:ENSG00000026297.17	ENST00000507747.1:ENST00000508775.6:ENST00000683770.1:ENST00000611959.2:ENST00000620173.5:ENST00000682774.1:ENST00000684236.1:ENST00000683968.1:ENST00000366855.10:ENST00000421787.5:ENST00000476238.6:ENST00000028008.9:ENST00000478180.6:ENST00000499370.6:ENST00000358165.7:ENST00000683158.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	117	2	1.51347	2.374405	3.23534	0.0322039	5.26448e-5	0.132543	0.00591845
chr16	21862395	21862493	6461865	0	-	0.357143	(0.35,0.378]	chr16	623459	43	INTRON	INTRON	NPIPB4	ENSG00000185864.18	ENST00000539318.5:ENST00000536041.5:ENST00000543449.1:ENST00000541674.5:ENST00000544693.5:ENST00000538859.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	54	2	1.71046	2.3743	3.03814	0.0441269	0.00767003	0.162255	0.075364
chr3	177053081	177053176	1870984	0	-	0.336842	(0.32,0.35]	chr3	187354	10	INTRON	INTRON	TBL1XR1	ENSG00000177565.18	ENST00000457928.7:ENST00000430069.5:ENST00000673974.1:ENST00000631253.2:ENST00000352800.10:ENST00000422442.6:ENST00000428970.5:ENST00000424913.5:ENST00000437738.5:ENST00000431421.5:ENST00000635794.1:ENST00000630796.2:ENST00000450267.5:ENST00000630833.2:ENST00000431674.5:ENST00000422066.5:ENST00000443315.5:ENST00000627825.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	108	2	1.88021	2.374285	2.86836	0.00751788	0.00250845	0.0773151	0.0446195
chr3	43705665	43705764	1410327	0	+	0.474747	(0.44,0.476]	chr3	147937	27	INTRON	INTRON	ABHD5	ENSG00000011198.10	ENST00000643520.1:ENST00000458276.7:ENST00000649763.1:ENST00000643140.1:ENST00000643500.1:ENST00000644371.2:ENST00000013894.3:ENST00000646378.1:ENST00000643477.1:ENST00000646799.1:ENST00000454293.2:ENST00000642351.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	58	2	2.00793	2.3742799999999997	2.74063	0.0176095	0.00937685	0.105143	0.0859966
chr7	75522908	75523008	3559099	0	-	0.44	(0.408,0.44]	chr7	331602	63	INTRON	INTRON	PMS2P3	ENSG00000127957.19	ENST00000693762.1:ENST00000394921.8:ENST00000430602.5:ENST00000418756.5:ENST00000437568.6:ENST00000533167.5:ENST00000691440.1:ENST00000422064.1:ENST00000438326.2	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript	7	92	2	2.33039	2.374175	2.41796	0.00598147	0.0015483	0.0674604	0.0363194
chr7	4688765	4688865	3269980	0	+	0.47	(0.44,0.476]	chr7	303884	55	INTRON	INTRON	FOXK1	ENSG00000164916.11	ENST00000328914.5	protein_coding	protein_coding	protein_coding	protein_coding	7	69	2	1.57262	2.37417	3.17572	0.0230575	0.00427037	0.126603	0.0573912
chr17	51114559	51114659	6796955	0	-	0.42	(0.408,0.44]	chr17	671024	345	INTRON	INTRON	SPAG9	ENSG00000008294.22	ENST00000262013.12:ENST00000505279.5:ENST00000357122.8	protein_coding	protein_coding	protein_coding	protein_coding	9	114	2	1.45405	2.37413	3.29421	0.0381812	3.47956e-5	0.141795	0.00469546
chr2	134948989	134949088	872551	0	+	0.525253	(0.515,0.57]	chr2	97703	7	INTRON	INTRON	CCNT2	ENSG00000082258.13	ENST00000419781.5:ENST00000446247.5:ENST00000264157.10:ENST00000452839.5:ENST00000295238.10:ENST00000452521.1:ENST00000438691.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	49	2	1.84511	2.37411	2.90311	0.0167182	0.0094233	0.110511	0.0817766
chr7	75526307	75526407	3559134	0	-	0.42	(0.408,0.44]	chr7	331608	3	SS3_PROX	SS3_PROX:INTRON	PMS2P3	ENSG00000127957.19	ENST00000693762.1:ENST00000394921.8:ENST00000430602.5:ENST00000418756.5:ENST00000437568.6:ENST00000533167.5:ENST00000691440.1:ENST00000422064.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	21	264	2	2.32004	2.374095	2.42815	2.43191e-4	1.22053e-4	0.0143663	0.00944529
chr6	17660656	17660755	3065740	0	-	0.363636	(0.35,0.378]	chr6	284824	84	INTRON	INTRON	NUP153	ENSG00000124789.12	ENST00000613258.4:ENST00000537253.5:ENST00000262077.3	protein_coding	protein_coding	protein_coding	protein_coding	14	178	2	1.96231	2.374025	2.78574	0.00171638	4.2339e-4	0.0382156	0.0189958
chr5	28922716	28922816	2330977	0	+	0.3	(0.28,0.32]	chr5	225135	1122	INTRON	INTRON	LINC02109	ENSG00000259786.7	ENST00000658190.1	lncRNA	lncRNA	lncRNA	lncRNA	4	63	2	1.6633	2.3739600000000003	3.08462	0.0522231	0.0078976	0.177274	0.076155
chr20	47247803	47247901	7348410	0	-	0.561224	(0.515,0.57]	chr20	749276	9	INTRON	INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000467200.6:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000468376.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	75	2	1.49552	2.3738200000000003	3.25212	0.0385038	2.5577e-4	0.159277	0.0148225
chr16	89786747	89786846	6544505	0	-	0.40404	(0.378,0.408]	chr16	634547	12	INTRON	INTRON	FANCA	ENSG00000187741.16	ENST00000561667.2:ENST00000389301.8:ENST00000568369.6:ENST00000564475.6:ENST00000696275.1:ENST00000696287.1:ENST00000696286.1:ENST00000696274.1:ENST00000696291.1:ENST00000696276.1:ENST00000567205.2:ENST00000567284.7:ENST00000696277.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	70	2	2.04622	2.373815	2.70141	0.0149927	0.00411614	0.107704	0.0564981
chr1	11786213	11786311	378728	0	-	0.520408	(0.515,0.57]	chr1	44427	6	UTR3	UTR3:EXON_MRNA	MTHFR	ENSG00000177000.13	ENST00000376590.9:ENST00000376592.6:ENST00000376583.7:ENST00000376585.6	protein_coding	protein_coding	protein_coding	protein_coding	10	103	2	1.69631	2.373805	3.0513	0.0103622	1.58148e-4	0.0897374	0.0114628
chr1	155685496	155685595	563292	0	-	0.343434	(0.32,0.35]	chr1	67204	47	INTRON	INTRON	YY1AP1	ENSG00000163374.20	ENST00000368339.9:ENST00000295566.8:ENST00000368330.6:ENST00000436865.5:ENST00000359205.9:ENST00000407221.5:ENST00000404643.5:ENST00000361140.8:ENST00000361831.9:ENST00000347088.9:ENST00000354691.9:ENST00000368340.9:ENST00000311573.9:ENST00000355499.9:ENST00000405763.7:ENST00000476093.5:ENST00000443231.5:ENST00000476027.5:ENST00000454523.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	75	2	1.85014	2.373785	2.89743	0.0127608	0.0119731	0.0962115	0.0926667
chr7	140478413	140478506	3661626	0	-	0.494624	(0.476,0.515]	chr7	339951	4	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	MKRN1	ENSG00000133606.11	ENST00000255977.7:ENST00000475010.5:ENST00000495305.5:ENST00000474576.5:ENST00000480552.5:ENST00000496169.5:ENST00000443720.6:ENST00000471104.5:ENST00000467513.5:ENST00000494939.1:ENST00000498535.1:ENST00000473444.1:ENST00000475180.5:ENST00000481705.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	67	2	1.7425	2.373785	3.00507	0.0417334	8.38796e-4	0.147007	0.0263691
chr2	96917671	96917771	1182406	0	-	0.41	(0.408,0.44]	chr2	126741	146	INTRON	INTRON	FAM178B	ENSG00000168754.15	ENST00000490605.3	protein_coding	protein_coding	protein_coding	protein_coding	3	42	2	2.00228	2.37373	2.74518	0.0389732	0.0152229	0.143072	0.108535
chr16	30196213	30196311	6337021	0	+	0.357143	(0.35,0.378]	chr16	607295	6	INTRON	INTRON	SLX1A	ENSG00000132207.18	ENST00000251303.11:ENST00000565081.1:ENST00000345535.8:ENST00000563995.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	87	2	2.15696	2.37371	2.59046	0.00672191	0.00528327	0.070858	0.0656295
chr10	131912146	131912236	4536977	0	+	0.355556	(0.35,0.378]	chr10	418863	6	UTR3	UTR3:EXON_MRNA:INTRON	PPP2R2D	ENSG00000175470.20	ENST00000455566.6:ENST00000616467.4:ENST00000482010.6:ENST00000470416.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	73	2	2.28125	2.3736800000000002	2.46611	0.0182271	0.00297318	0.107842	0.0501309
chr17	35072855	35072955	6757800	0	-	0.46	(0.44,0.476]	chr17	664148	28	INTRON	INTRON	RFFL	ENSG00000092871.17	ENST00000315249.11:ENST00000584655.5:ENST00000447669.6:ENST00000584541.1:ENST00000414419.6:ENST00000581265.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	41	2	2.21079	2.373595	2.5364	0.0309324	0.0194581	0.13151	0.119831
chr17	66364819	66364919	6662920	0	+	0.37	(0.35,0.378]	chr17	650326	6	INTRON	INTRON	PRKCA	ENSG00000154229.12	ENST00000413366.8:ENST00000578063.5:ENST00000284384.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	45	2	1.81767	2.373595	2.92952	0.0640429	0.00881187	0.177882	0.084878
chr7	50786184	50786284	3532616	0	-	0.36	(0.35,0.378]	chr7	329547	34	INTRON	INTRON	GRB10	ENSG00000106070.20	ENST00000335866.7:ENST00000644769.1:ENST00000644879.1:ENST00000402497.6:ENST00000645075.2:ENST00000439044.7:ENST00000644716.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	45	2	1.81767	2.373595	2.92952	0.0640429	0.00881187	0.177882	0.084878
chr16	70273838	70273935	6510334	0	-	0.453608	(0.44,0.476]	chr16	630585	15	INTRON	INTRON	AARS1	ENSG00000090861.17	ENST00000674963.1:ENST00000675643.1:ENST00000675917.1:ENST00000674691.1:ENST00000261772.13:ENST00000675569.1:ENST00000676209.1:ENST00000676211.1:ENST00000676040.1:ENST00000675953.1:ENST00000675691.1:ENST00000676004.1:ENST00000675270.1:ENST00000675403.1:ENST00000676212.1:ENST00000675045.1:ENST00000675035.1:ENST00000676168.1:ENST00000674652.1:ENST00000675133.1:ENST00000675120.1:ENST00000674811.1:ENST00000674512.1:ENST00000675853.1:ENST00000565361.3:ENST00000676247.1:ENST00000674848.1:ENST00000674962.1:ENST00000675371.1:ENST00000675986.1:ENST00000674768.1:ENST00000675297.1:ENST00000675751.1:ENST00000564359.6:ENST00000675338.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	95	2	1.98938	2.3735749999999998	2.75777	0.0198602	2.63233e-4	0.109608	0.0143626
chr19	8489027	8489114	7011229	0	+	0.344828	(0.32,0.35]	chr19	696225	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	HNRNPM	ENSG00000099783.12	ENST00000348943.7:ENST00000325495.9:ENST00000600806.5:ENST00000620401.4:ENST00000602219.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	78	2	1.99785	2.3735749999999998	2.7493	0.0215554	0.00296357	0.114686	0.0500135
chr1	46312198	46312297	96625	0	+	0.444444	(0.44,0.476]	chr1	12977	15	INTRON	INTRON	UQCRH	ENSG00000173660.12	ENST00000311672.10:ENST00000489056.5:ENST00000496387.5:ENST00000460947.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	42	2	2.08277	2.37355	2.66433	0.0309998	0.0194358	0.13151	0.119831
chr11	57306520	57306618	4952703	0	-	0.469388	(0.44,0.476]	chr11	464753	32	INTRON	INTRON	TNKS1BP1	ENSG00000149115.14	ENST00000528882.5:ENST00000358252.8:ENST00000532437.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	42	2	2.08277	2.37355	2.66433	0.0309998	0.0194358	0.13151	0.119831
chr17	30779182	30779282	6590288	0	+	0.52	(0.515,0.57]	chr17	640892	29	INTRON	INTRON	SUZ12P1	ENSG00000264538.7	ENST00000582329.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	8	91	2	2.20043	2.37349	2.54655	0.00392045	8.595e-4	0.0570863	0.0267428
chr7	119743817	119743917	3628776	0	-	0.28	[0,0.28]	chr7	337319	385	INTRON	INTRON	LINC02476	ENSG00000225546.6	ENST00000660268.1:ENST00000431071.5	lncRNA	lncRNA	lncRNA	lncRNA	3	59	2	2.20073	2.373485	2.54624	0.0388449	0.0235708	0.143072	0.128907
chr1	54377191	54377291	463469	0	-	0.58	(0.57,1]	chr1	55784	205	INTRON	INTRON	SSBP3	ENSG00000157216.16	ENST00000610401.5:ENST00000357475.9:ENST00000371319.8:ENST00000417664.7:ENST00000533946.6:ENST00000371320.8:ENST00000525990.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	35	2	2.01216	2.37345	2.73474	0.0163389	0.00241874	0.101571	0.0454275
chr19	48481732	48481829	7087722	0	+	0.587629	(0.57,1]	chr19	709311	27	UTR3	UTR3:EXON_MRNA	CYTH2	ENSG00000105443.16	ENST00000427476.4:ENST00000452733.7	protein_coding	protein_coding	protein_coding	protein_coding	5	35	2	2.01216	2.37345	2.73474	0.0163389	0.00241874	0.101571	0.0454275
chr1	10044176	10044275	19238	0	+	0.474747	(0.44,0.476]	chr1	1838	101	INTRON	INTRON	UBE4B	ENSG00000130939.20	ENST00000672724.1:ENST00000253251.12:ENST00000343090.11:ENST00000377153.5	protein_coding	protein_coding	protein_coding	protein_coding	3	41	2	2.00609	2.37336	2.74063	0.0360127	0.0176095	0.152355	0.105143
chr17	2330179	2330274	6704824	0	-	0.473684	(0.44,0.476]	chr17	656410	1	EXON_SMALL	EXON_SMALL:SS5_PROX:INTRON	TSR1:SNORD91A	ENSG00000167721.11:ENSG00000212163.6	ENST00000301364.10:ENST00000575049.1:ENST00000609620.2	snoRNA	snoRNA	snoRNA:protein_coding	snoRNA:protein_coding:nonsense_mediated_decay	3	41	2	2.00609	2.37336	2.74063	0.0360127	0.0176095	0.152355	0.105143
chr17	82529491	82529591	6692702	0	+	0.47	(0.44,0.476]	chr17	654627	88	INTRON	INTRON	FOXK2	ENSG00000141568.21	ENST00000473637.6:ENST00000335255.10:ENST00000527313.6:ENST00000570585.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	41	2	2.00609	2.37336	2.74063	0.0360127	0.0176095	0.152355	0.105143
chr19	50404691	50404790	7092893	0	+	0.474747	(0.44,0.476]	chr19	710809	7	INTRON	INTRON	POLD1	ENSG00000062822.16	ENST00000600859.5:ENST00000600746.2:ENST00000599857.7:ENST00000613923.6:ENST00000601098.6:ENST00000643407.1:ENST00000440232.7:ENST00000595904.6:ENST00000593887.2:ENST00000687454.1:ENST00000644560.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	41	2	2.00609	2.37336	2.74063	0.0360127	0.0176095	0.152355	0.105143
chr11	2946642	2946741	4891515	0	-	0.343434	(0.32,0.35]	chr11	458261	6	INTRON	INTRON	NAP1L4	ENSG00000205531.13	ENST00000620138.4:ENST00000380542.9:ENST00000469805.5:ENST00000469089.5:ENST00000526115.5:ENST00000492594.6:ENST00000526023.5:ENST00000492685.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	166	2	2.02072	2.3732949999999997	2.72587	0.0056508	1.90571e-4	0.0653997	0.0120089
chr21	6326271	6326370	7364836	0	+	0.393939	(0.378,0.408]	chr21	751664	18	INTRON	INTRON	ENSG00000278903	ENSG00000278903.4	ENST00000688458.1:ENST00000689306.1:ENST00000692898.1:ENST00000624576.3:ENST00000623738.3:ENST00000692237.1:ENST00000692046.1:ENST00000689354.1:ENST00000624165.1	lncRNA	lncRNA	lncRNA	lncRNA	5	72	2	2.33619	2.3732800000000003	2.41037	0.0100185	0.00607113	0.0880217	0.0676501
chr15	40220850	40220941	6001874	0	+	0.318681	(0.28,0.32]	chr15	570706	2	UTR3	UTR3:EXON_MRNA	BUB1B	ENSG00000156970.13	ENST00000412359.7:ENST00000287598.11	protein_coding	protein_coding	protein_coding	protein_coding	10	156	2	2.26828	2.373275	2.47827	0.00455673	0.00100401	0.0595107	0.0292217
chr1	28930463	28930563	59115	0	+	0.49	(0.476,0.515]	chr1	7621	153	INTRON	INTRON	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000647918.1:ENST00000646800.1:ENST00000644342.1:ENST00000646189.1:ENST00000482464.6:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000646260.1:ENST00000373798.5:ENST00000644600.1:ENST00000649674.1:ENST00000643173.1:ENST00000343067.9:ENST00000644780.1:ENST00000650265.1:ENST00000648181.1:ENST00000643604.1:ENST00000648891.1:ENST00000373797.2:ENST00000349460.9:ENST00000645184.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	49	2	1.80284	2.37317	2.9435	0.033161	0.00929849	0.145899	0.0817766
chr1	160321545	160321644	572095	0	-	0.484848	(0.476,0.515]	chr1	69341	71	INTRON	INTRON	COPA	ENSG00000122218.17	ENST00000241704.8:ENST00000696204.1:ENST00000696203.1:ENST00000696202.1:ENST00000649963.1:ENST00000696208.1:ENST00000696207.1:ENST00000696206.1:ENST00000649676.1:ENST00000368069.7:ENST00000647693.1:ENST00000649787.1:ENST00000650154.1:ENST00000647799.1:ENST00000648805.1:ENST00000647683.1:ENST00000649231.1:ENST00000648501.1:ENST00000696209.1:ENST00000696210.1:ENST00000696211.1:ENST00000647899.1:ENST00000696212.1:ENST00000696214.1:ENST00000696213.1:ENST00000696215.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	49	2	1.80284	2.37317	2.9435	0.033161	0.00929849	0.145899	0.0817766
chr17	2601273	2601372	6547510	0	+	0.494949	(0.476,0.515]	chr17	635203	65	INTRON	INTRON	PAFAH1B1	ENSG00000007168.14	ENST00000576586.5:ENST00000397195.10:ENST00000676201.1:ENST00000575477.5:ENST00000675621.1:ENST00000676353.1:ENST00000674717.1:ENST00000675202.1:ENST00000675764.1:ENST00000674608.1:ENST00000676077.1:ENST00000676098.1:ENST00000572915.6:ENST00000570400.1:ENST00000571289.1:ENST00000675430.1:ENST00000675331.1:ENST00000676188.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	49	2	1.80284	2.37317	2.9435	0.033161	0.00929849	0.145899	0.0817766
chr9	105738689	105738789	4182986	0	+	0.42	(0.408,0.44]	chr9	381513	157	INTRON	INTRON	TMEM38B	ENSG00000095209.12	ENST00000374692.8:ENST00000374688.5:ENST00000435034.5:ENST00000451560.1	protein_coding	protein_coding	protein_coding	protein_coding	5	68	2	2.19524	2.373135	2.55103	0.00990486	0.00587353	0.0838372	0.0690758
chr2	161173614	161173714	900460	0	+	0.33	(0.32,0.35]	chr2	99612	102	INTRON	INTRON	TANK	ENSG00000136560.14	ENST00000259075.6:ENST00000432002.5:ENST00000463502.1:ENST00000440506.5:ENST00000429217.5:ENST00000406287.5:ENST00000402568.5:ENST00000457887.5:ENST00000392749.7:ENST00000432692.6:ENST00000441987.5:ENST00000405852.5:ENST00000456358.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	108	2	2.15035	2.3730849999999997	2.59582	0.00745925	0.00178944	0.0748233	0.0392749
chr15	56950179	56950279	6032427	0	+	0.38	(0.378,0.408]	chr15	574663	287	INTRON	INTRON	TCF12	ENSG00000140262.18	ENST00000438423.6:ENST00000267811.9:ENST00000333725.10:ENST00000560190.5:ENST00000559609.5:ENST00000558908.5:ENST00000557843.5:ENST00000557947.5:ENST00000561152.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	69	2	2.35168	2.3730599999999997	2.39444	0.0122858	0.0046563	0.091087	0.0629753
chr4	73251482	73251581	2160754	0	-	0.323232	(0.32,0.35]	chr4	212799	285	INTRON	INTRON	ANKRD17	ENSG00000132466.20	ENST00000358602.9:ENST00000558247.5:ENST00000330838.10:ENST00000561029.1	protein_coding	protein_coding	protein_coding	protein_coding	5	79	2	2.02133	2.37303	2.72473	0.017146	0.00433316	0.111072	0.0579683
chr6	83187754	83187844	3145822	0	-	0.4	(0.378,0.408]	chr6	293308	3	INTRON	INTRON	PGM3	ENSG00000013375.16	ENST00000513973.6:ENST00000512866.5:ENST00000650640.1:ENST00000616566.5:ENST00000283977.9:ENST00000651425.1:ENST00000650642.1:ENST00000651204.1:ENST00000652222.1:ENST00000506587.5:ENST00000509219.2:ENST00000652468.1:ENST00000510258.1:ENST00000505470.5:ENST00000507554.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	79	2	2.18994	2.373005	2.55607	0.00704647	0.00448961	0.0718189	0.0612035
chr8	41731682	41731782	3938399	0	-	0.4	(0.378,0.408]	chr8	361111	33	INTRON	INTRON	ANK1	ENSG00000029534.21	ENST00000347528.8:ENST00000265709.13:ENST00000289734.13	protein_coding	protein_coding	protein_coding	protein_coding	6	79	2	2.18994	2.373005	2.55607	0.00704647	0.00448961	0.0718189	0.0612035
chr4	57006615	57006715	1964219	0	+	0.38	(0.378,0.408]	chr4	197147	4	SS3_PROX	SS3_PROX:INTRON	POLR2B	ENSG00000047315.17	ENST00000381227.5:ENST00000431623.6:ENST00000441246.6:ENST00000314595.6	protein_coding	protein_coding	protein_coding	protein_coding	5	69	2	2.22859	2.37296	2.51733	0.00808319	0.00763308	0.0777238	0.0766625
chr14	102633510	102633610	5822942	0	+	0.39	(0.378,0.408]	chr14	552490	398	INTRON	INTRON	RCOR1	ENSG00000089902.10	ENST00000262241.7	protein_coding	protein_coding	protein_coding	protein_coding	8	109	2	2.27995	2.372955	2.46596	0.00388691	0.00125753	0.0544347	0.03295
chr3	17506973	17507073	1628058	0	-	0.39	(0.378,0.408]	chr3	168186	781	INTRON	INTRON	TBC1D5	ENSG00000131374.15	ENST00000253692.11:ENST00000696125.1:ENST00000414318.2:ENST00000429383.8:ENST00000446818.6:ENST00000415814.6:ENST00000452492.6:ENST00000412981.5:ENST00000428355.5:ENST00000425944.5:ENST00000430169.5:ENST00000445294.5:ENST00000414349.5:ENST00000443499.6:ENST00000444756.5:ENST00000497531.5:ENST00000443386.5:ENST00000507877.5:ENST00000446863.5:ENST00000434420.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	43	2	1.88729	2.372915	2.85854	0.0532327	0.0107837	0.162538	0.0920575
chr1	179224842	179224942	593031	0	-	0.48	(0.476,0.515]	chr1	71074	819	INTRON	INTRON	ABL2	ENSG00000143322.21	ENST00000502732.6:ENST00000367623.8:ENST00000507173.5:ENST00000511413.5:ENST00000668691.1:ENST00000392043.4:ENST00000660584.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	66	2	2.3346	2.3729050000000003	2.41121	0.0110342	0.00494807	0.0873897	0.0646039
chr17	59624456	59624556	6641608	0	+	0.43	(0.408,0.44]	chr17	648527	39	INTRON	INTRON	CLTC	ENSG00000141367.12	ENST00000621829.4:ENST00000393043.5:ENST00000269122.8:ENST00000580081.1:ENST00000579456.5:ENST00000584313.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	77	2	1.62122	2.3729	3.12458	0.0394247	4.61817e-4	0.143072	0.0194611
chr19	4497156	4497245	7002473	0	+	0.505618	(0.476,0.515]	chr19	694654	1	UTR3	UTR3:EXON_MRNA:INTRON	HDGFL2	ENSG00000167674.15	ENST00000616600.5:ENST00000621835.4:ENST00000615225.1:ENST00000587016.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	41	2	2.26034	2.3728049999999996	2.48527	0.03496	0.0166235	0.13747500000000001	0.110511
chr3	31631851	31631948	1392402	0	+	0.484536	(0.476,0.515]	chr3	145765	21	INTRON	INTRON	STT3B	ENSG00000163527.10	ENST00000295770.4:ENST00000463044.1:ENST00000488151.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	41	2	2.26034	2.3728049999999996	2.48527	0.03496	0.0166235	0.13747500000000001	0.110511
chr6	73474751	73474850	2904215	0	+	0.494949	(0.476,0.515]	chr6	274372	7	INTRON	INTRON	MTO1	ENSG00000135297.17	ENST00000415954.6:ENST00000681094.1:ENST00000680289.1:ENST00000680775.1:ENST00000680609.1:ENST00000681212.1:ENST00000679627.1:ENST00000679675.1:ENST00000680350.1:ENST00000681610.1:ENST00000681294.1:ENST00000680686.1:ENST00000681509.1:ENST00000680570.1:ENST00000680131.1:ENST00000681284.1:ENST00000681890.1:ENST00000680266.1:ENST00000680875.1:ENST00000679905.1:ENST00000681620.1:ENST00000681204.1:ENST00000681705.1:ENST00000681691.1:ENST00000679612.1:ENST00000681141.1:ENST00000498286.6:ENST00000681254.1:ENST00000681624.1:ENST00000679418.1:ENST00000681579.1:ENST00000681267.1:ENST00000680902.1:ENST00000680238.1:ENST00000681165.1:ENST00000679364.1:ENST00000679411.1:ENST00000679604.1:ENST00000679900.1:ENST00000680601.1:ENST00000487960.2:ENST00000521156.6:ENST00000445187.6:ENST00000680034.1:ENST00000442897.7:ENST00000679808.1:ENST00000679993.1:ENST00000522205.6:ENST00000680544.1:ENST00000370305.5:ENST00000680428.1:ENST00000679352.1:ENST00000679524.1:ENST00000681932.1:ENST00000680195.1:ENST00000681438.1:ENST00000679730.1:ENST00000681337.1:ENST00000679947.1:ENST00000680405.1:ENST00000680794.1:ENST00000679870.1:ENST00000524046.2:ENST00000679592.1:ENST00000370300.8:ENST00000370308.8:ENST00000415228.5:ENST00000462039.5:ENST00000680758.1:ENST00000523763.2:ENST00000679591.1:ENST00000680841.1:ENST00000680563.1:ENST00000681500.1:ENST00000466977.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	41	2	2.26034	2.3728049999999996	2.48527	0.03496	0.0166235	0.13747500000000001	0.110511
chr16	18119171	18119271	6453825	0	-	0.44	(0.408,0.44]	chr16	621960	1154	INTRON	INTRON	ENSG00000259929:ENSG00000260242	ENSG00000259929.5:ENSG00000260242.1	ENST00000567304.1:ENST00000563866.1	lncRNA	lncRNA	lncRNA	lncRNA	4	57	2	2.21238	2.3727549999999997	2.53313	0.0193525	0.00739595	0.119831	0.074277
chr20	31769250	31769349	7253964	0	+	0.30303	(0.28,0.32]	chr20	736751	22	INTRON	INTRON	TPX2	ENSG00000088325.16	ENST00000340513.4:ENST00000300403.11	protein_coding	protein_coding	protein_coding	protein_coding	3	52	2	2.28998	2.372715	2.45545	0.0438092	0.0166401	0.14901	0.110511
chr1	212288683	212288782	308105	0	+	0.353535	(0.35,0.378]	chr1	35547	20	INTRON	INTRON	PPP2R5A	ENSG00000066027.12	ENST00000261461.7	protein_coding	protein_coding	protein_coding	protein_coding	6	83	2	2.01378	2.37271	2.73164	0.00952336	0.00387645	0.0863913	0.0543578
chr2	26258252	26258351	714296	0	+	0.565657	(0.515,0.57]	chr2	82487	34	INTRON	INTRON	HADHB	ENSG00000138029.14	ENST00000448743.5:ENST00000537713.5:ENST00000405867.7:ENST00000317799.10:ENST00000425035.5:ENST00000412805.5	protein_coding	protein_coding	protein_coding	protein_coding	5	50	2	1.68687	2.37263	3.05839	0.0300837	0.00485936	0.129186	0.0640618
chr5	176508121	176508219	2552780	0	+	0.377551	(0.35,0.378]	chr5	243725	13	UTR3	UTR3:EXON_MRNA	FAF2	ENSG00000113194.13	ENST00000261942.7	protein_coding	protein_coding	protein_coding	protein_coding	5	73	2	1.7942	2.372625	2.95105	0.0378648	0.00115843	0.141212	0.0313803
chr8	63182171	63182270	3773125	0	+	0.40404	(0.378,0.408]	chr8	349936	64	INTRON	INTRON	YTHDF3	ENSG00000185728.17	ENST00000617200.1:ENST00000623280.3:ENST00000539294.6:ENST00000621957.4:ENST00000517371.5:ENST00000615676.1:ENST00000621413.4:ENST00000612880.4:ENST00000617952.4:ENST00000621890.4:ENST00000619337.4:ENST00000613853.4:ENST00000621820.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	106	2	2.34855	2.372595	2.39664	0.00480522	0.00119031	0.0602209	0.0316639
chr6	2967687	2967786	3047693	0	-	0.353535	(0.35,0.378]	chr6	283597	14	UTR5	UTR5:EXON_MRNA:INTRON	SERPINB6	ENSG00000124570.21	ENST00000643098.1:ENST00000380546.7:ENST00000380539.7:ENST00000380529.5:ENST00000649845.1:ENST00000644178.1:ENST00000612421.3:ENST00000616722.4:ENST00000642543.1:ENST00000644388.1:ENST00000380520.6:ENST00000645580.1:ENST00000644693.1:ENST00000646775.1:ENST00000645421.1:ENST00000643227.1:ENST00000646688.1:ENST00000644777.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	84	2	1.86055	2.3725	2.88445	0.0168498	0.00212567	0.11068	0.041756
chr6	149794169	149794267	2996491	0	+	0.316327	(0.28,0.32]	chr6	280386	1	INTRON	INTRON	PCMT1	ENSG00000120265.19	ENST00000367384.7:ENST00000367378.6:ENST00000484601.6:ENST00000367380.9:ENST00000544496.5:ENST00000649295.1:ENST00000464889.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	54	2	2.18975	2.3724800000000004	2.55521	0.0776042	0.0067419	0.196285	0.0739405
chr11	47807440	47807540	4951742	0	-	0.51	(0.476,0.515]	chr11	464553	3	SS3_PROX	SS3_PROX:INTRON	NUP160	ENSG00000030066.14	ENST00000694866.1:ENST00000378460.7:ENST00000530326.5:ENST00000528071.5	protein_coding	protein_coding	protein_coding	protein_coding	3	41	2	1.91817	2.3724499999999997	2.82673	0.0459211	0.0134403	0.164984	0.0946278
chr9	125330983	125331071	4198962	0	+	0.238636	[0,0.28]	chr9	383226	4	INTRON	INTRON	GAPVD1	ENSG00000165219.23	ENST00000497580.5:ENST00000297933.11:ENST00000470056.5:ENST00000394105.6:ENST00000394083.6:ENST00000495955.5:ENST00000467750.5:ENST00000394104.6:ENST00000312123.13:ENST00000431329.5:ENST00000436712.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	192	2	2.20251	2.37244	2.54237	0.00447054	0.00134553	0.0593175	0.0337766
chr1	29047339	29047438	60297	0	+	0.484848	(0.476,0.515]	chr1	7705	60	INTRON	INTRON	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000647918.1:ENST00000646800.1:ENST00000644342.1:ENST00000646189.1:ENST00000482464.6:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000646260.1:ENST00000373798.5:ENST00000644600.1:ENST00000649674.1:ENST00000643173.1:ENST00000343067.9:ENST00000644780.1:ENST00000650265.1:ENST00000648181.1:ENST00000643604.1:ENST00000648891.1:ENST00000373797.2:ENST00000349460.9:ENST00000645184.1:ENST00000645111.1:ENST00000643302.1:ENST00000645999.1:ENST00000642643.1:ENST00000636666.1:ENST00000644848.1:ENST00000644470.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	84	2	1.7425	2.372405	3.00231	0.0417334	1.96194e-4	0.147007	0.0122528
chr22	21489616	21489715	7559985	0	-	0.545455	(0.515,0.57]	chr22	773311	15	EXON_MRNA	EXON_MRNA:INTRON	PI4KAP2	ENSG00000183506.17	ENST00000450651.5:ENST00000467443.5:ENST00000480319.5:ENST00000479693.1	transcribed_unitary_pseudogene	retained_intron	transcribed_unitary_pseudogene	retained_intron:processed_transcript	16	171	2	2.32174	2.37238	2.42302	3.12738e-4	2.04733e-4	0.0162569	0.0124557
chr6	159728203	159728302	3022395	0	+	0.343434	(0.32,0.35]	chr6	281890	1	INTRON	INTRON	WTAP	ENSG00000146457.16	ENST00000358372.8:ENST00000650096.1:ENST00000614346.4:ENST00000621533.5:ENST00000494513.1:ENST00000631126.2:ENST00000337387.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	166	2	2.35316	2.372265	2.39137	0.00171939	8.28744e-4	0.0374701	0.0263691
chr2	97240365	97240465	832168	0	+	0.34	(0.32,0.35]	chr2	93233	61	INTRON	INTRON	ANKRD36	ENSG00000135976.21	ENST00000420699.9:ENST00000652721.1:ENST00000461153.7:ENST00000421946.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	86	2	1.25832	2.3722600000000003	3.4862	0.0563972	0.001711	0.184423	0.037419
chr14	63499233	63499333	5907463	0	-	0.34	(0.32,0.35]	chr14	561132	450	INTRON	INTRON	PPP2R5E	ENSG00000154001.14	ENST00000337537.8:ENST00000422769.6:ENST00000555899.1:ENST00000556484.5:ENST00000553266.5:ENST00000556878.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	48	2	1.77704	2.37225	2.96746	0.0719969	0.00815799	0.187322	0.0810802
chr15	87681675	87681775	6256371	0	-	0.35	(0.32,0.35]	chr15	596826	1383	INTRON	INTRON	ENSG00000259560	ENSG00000259560.2	ENST00000665121.1:ENST00000560439.1	lncRNA	lncRNA	lncRNA	lncRNA	3	48	2	1.77704	2.37225	2.96746	0.0719969	0.00815799	0.187322	0.0810802
chr7	152238406	152238506	3679293	0	-	0.33	(0.32,0.35]	chr7	341568	3	SS5_PROX	SS5_PROX:INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000473186.5:ENST00000679882.1:ENST00000681033.1:ENST00000679645.1:ENST00000684550.1:ENST00000489110.2:ENST00000683490.1:ENST00000680479.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	48	2	1.77704	2.37225	2.96746	0.0719969	0.00815799	0.187322	0.0810802
chr19	7936147	7936245	7130250	0	-	0.571429	(0.57,1]	chr19	718334	5	INTRON	INTRON	TIMM44	ENSG00000104980.8	ENST00000270538.8:ENST00000595831.5:ENST00000595876.5:ENST00000597926.1:ENST00000600748.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	51	2	1.71424	2.372215	3.03019	0.0279017	1.05548e-4	0.137011	0.00920724
chr8	23548410	23548510	3715294	0	+	0.51	(0.476,0.515]	chr8	345227	48	INTRON	INTRON	SLC25A37	ENSG00000147454.14	ENST00000519973.6:ENST00000290075.10:ENST00000417331.6:ENST00000518881.5:ENST00000520654.1:ENST00000523930.1:ENST00000523883.5:ENST00000517923.1:ENST00000520949.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	20	251	2	2.31223	2.372165	2.4321	3.31545e-4	9.92297e-5	0.0168836	0.00838841
chr9	111915558	111915658	4184641	0	+	0.42	(0.408,0.44]	chr9	381691	4	SS3_PROX	SS3_PROX:INTRON	UGCG	ENSG00000148154.10	ENST00000374279.4:ENST00000495085.1:ENST00000490110.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	108	2	2.294	2.372015	2.45003	0.00990006	6.02981e-4	0.0838372	0.0223465
chrX	44949583	44949683	7649366	0	+	0.38	(0.378,0.408]	chrX	782726	752	INTRON	INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000675440.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000621147.5:ENST00000475233.1:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	43	2	2.35527	2.372	2.38873	0.0458857	0.0121511	0.149888	0.0963966
chr13	99332735	99332835	5525769	0	+	0.6	(0.57,1]	chr13	528270	143	INTRON	INTRON	UBAC2	ENSG00000134882.16	ENST00000355700.9:ENST00000403766.8:ENST00000468067.5:ENST00000376440.6:ENST00000494576.5:ENST00000473194.5:ENST00000460562.5:ENST00000480738.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	27	2	2.07956	2.37197	2.66438	0.0171563	0.013114	0.104099	0.0998629
chr12	42358364	42358462	5118549	0	+	0.357143	(0.35,0.378]	chr12	482945	28	INTRON	INTRON	PPHLN1	ENSG00000134283.18	ENST00000549190.5:ENST00000337898.10:ENST00000395580.7:ENST00000610488.4:ENST00000619544.4:ENST00000613154.4:ENST00000551723.5:ENST00000552429.5:ENST00000395568.6:ENST00000256678.12:ENST00000358314.12:ENST00000449194.6:ENST00000552761.5:ENST00000551406.5:ENST00000317560.13:ENST00000432191.6:ENST00000552202.5:ENST00000550535.5:ENST00000546750.5:ENST00000547847.1:ENST00000552794.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	83	2	1.65955	2.37193	3.08431	0.0133768	0.0065853	0.10089	0.0701901
chr1	32389888	32389988	415150	0	-	0.5	(0.476,0.515]	chr1	50088	26	INTRON	INTRON	BSDC1	ENSG00000160058.19	ENST00000455895.7:ENST00000444377.5:ENST00000341071.11:ENST00000526031.5:ENST00000419121.6:ENST00000446293.6:ENST00000373520.8:ENST00000527513.5:ENST00000527163.5:ENST00000530485.1:ENST00000474414.5:ENST00000530876.5:ENST00000530753.1:ENST00000533084.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	41	2	1.79693	2.371925	2.94692	0.0649782	0.00794331	0.179417	0.0797304
chr16	89468668	89468768	6543383	0	-	0.51	(0.476,0.515]	chr16	634281	370	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	41	2	1.79693	2.371925	2.94692	0.0649782	0.00794331	0.179417	0.0797304
chr7	107104171	107104271	3377763	0	+	0.5	(0.476,0.515]	chr7	316252	119	INTRON	INTRON	PRKAR2B	ENSG00000005249.13	ENST00000265717.5:ENST00000393613.6:ENST00000488792.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	41	2	1.79693	2.371925	2.94692	0.0649782	0.00794331	0.179417	0.0797304
chr5	146147673	146147772	2747047	0	-	0.282828	(0.28,0.32]	chr5	258826	31	EXON_MRNA	EXON_MRNA:INTRON	LARS1	ENSG00000133706.19	ENST00000674174.1:ENST00000674170.1:ENST00000674479.1:ENST00000674309.1:ENST00000674218.1:ENST00000674467.1:ENST00000674290.1:ENST00000674447.1:ENST00000674270.1:ENST00000674383.1:ENST00000674191.1:ENST00000674158.1:ENST00000394434.7:ENST00000674398.1:ENST00000674277.1:ENST00000274562.13:ENST00000510191.5:ENST00000674310.1:ENST00000512412.2:ENST00000508667.5:ENST00000507095.1:ENST00000674417.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	86	2	2.18092	2.371915	2.56291	0.0271832	0.00227849	0.123904	0.0437013
chr1	54381186	54381286	463509	0	-	0.53	(0.515,0.57]	chr1	55784	245	INTRON	INTRON	SSBP3	ENSG00000157216.16	ENST00000610401.5:ENST00000357475.9:ENST00000371319.8:ENST00000417664.7:ENST00000533946.6:ENST00000371320.8:ENST00000525990.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	36	2	2.08547	2.371905	2.65834	0.0289426	0.0187418	0.1274	0.117523
chr7	121047892	121047992	3394231	0	+	0.56	(0.515,0.57]	chr7	317688	5	INTRON	INTRON	CPED1	ENSG00000106034.18	ENST00000340646.9:ENST00000310396.10:ENST00000428526.5:ENST00000495036.5:ENST00000450913.6:ENST00000520801.5:ENST00000521774.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	36	2	2.08547	2.371905	2.65834	0.0289426	0.0187418	0.1274	0.117523
chr7	149289355	149289437	3446102	0	+	0.548781	(0.515,0.57]	chr7	321484	3	INTRON	INTRON	ZNF783	ENSG00000204946.10	ENST00000378052.5:ENST00000476295.5:ENST00000481519.5:ENST00000489518.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	3	36	2	2.08547	2.371905	2.65834	0.0289426	0.0187418	0.1274	0.117523
chr8	42153622	42153719	3742738	0	+	0.56701	(0.515,0.57]	chr8	347999	8	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	AP3M2	ENSG00000070718.12	ENST00000174653.3:ENST00000518421.5:ENST00000517865.5:ENST00000520685.1:ENST00000396926.8:ENST00000521280.5:ENST00000530375.5:ENST00000522288.5:ENST00000521235.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	36	2	2.08547	2.371905	2.65834	0.0289426	0.0187418	0.1274	0.117523
chr6	28610025	28610125	3075297	0	-	0.52	(0.515,0.57]	chr6	285910	121	INTRON	INTRON	ZBED9	ENSG00000232040.4	ENST00000530247.1:ENST00000524745.2	protein_coding	processed_transcript	protein_coding	processed_transcript	7	59	2	1.48827	2.37187	3.25547	0.0301583	0.00261721	0.142572	0.0455413
chr10	86495404	86495503	4659099	0	-	0.484848	(0.476,0.515]	chr10	429282	211	INTRON	INTRON	WAPL	ENSG00000062650.20	ENST00000298767.10	protein_coding	protein_coding	protein_coding	protein_coding	3	41	2	1.86492	2.371855	2.87879	0.0550347	0.00999149	0.165463	0.0879541
chr11	62883099	62883181	4799614	0	+	0.487805	(0.476,0.515]	chr11	444828	1	SS5_PROX	SS5_PROX:INTRON	SLC3A2	ENSG00000168003.18	ENST00000680729.1:ENST00000680002.1:ENST00000681467.1:ENST00000377890.6:ENST00000538084.2:ENST00000681569.1:ENST00000680725.1:ENST00000377891.6:ENST00000377889.6:ENST00000681215.1:ENST00000535296.5:ENST00000680631.1:ENST00000544377.2:ENST00000680610.1:ENST00000680297.1:ENST00000680134.1:ENST00000681232.1:ENST00000681657.1:ENST00000541425.6:ENST00000679908.1:ENST00000681563.1:ENST00000338663.12:ENST00000680654.1:ENST00000681107.1:ENST00000541649.2:ENST00000538682.6:ENST00000536981.6:ENST00000539891.6:ENST00000679594.1:ENST00000535768.2:ENST00000537508.6:ENST00000537839.5:ENST00000546253.5:ENST00000457660.6:ENST00000546312.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	41	2	1.86492	2.371855	2.87879	0.0550347	0.00999149	0.165463	0.0879541
chr19	15405836	15405936	7148004	0	-	0.51	(0.476,0.515]	chr19	722120	14	INTRON	INTRON	AKAP8L	ENSG00000011243.19	ENST00000594594.6:ENST00000679638.1:ENST00000595465.6:ENST00000599137.6:ENST00000397410.10:ENST00000609519.5:ENST00000593845.5:ENST00000680649.1:ENST00000596213.6:ENST00000681170.1:ENST00000680703.1:ENST00000680017.1:ENST00000595879.6:ENST00000680303.1:ENST00000679634.1:ENST00000681744.1:ENST00000680803.1:ENST00000681459.1:ENST00000680323.1:ENST00000680774.1:ENST00000680302.1:ENST00000680103.1:ENST00000680642.1:ENST00000681405.1:ENST00000680957.1:ENST00000680865.1:ENST00000680363.1:ENST00000595087.6:ENST00000600065.6:ENST00000594893.5:ENST00000595136.5:ENST00000599488.5:ENST00000596195.5:ENST00000600247.5:ENST00000595067.1:ENST00000601147.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	41	2	1.86492	2.371855	2.87879	0.0550347	0.00999149	0.165463	0.0879541
chr1	1845979	1846079	362390	0	-	0.47	(0.44,0.476]	chr1	42311	59	INTRON	INTRON	GNB1	ENSG00000078369.18	ENST00000610897.4:ENST00000615252.4:ENST00000378609.9:ENST00000439272.6:ENST00000434686.6:ENST00000472614.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	42	2	2.29842	2.3717800000000002	2.44514	0.0552483	0.0087381	0.165463	0.0845538
chr15	92908003	92908097	6103769	0	+	0.340426	(0.32,0.35]	chr15	581400	1	EXON_LNCRNA	EXON_LNCRNA:INTRON	ENSG00000279765:CHD2:ENSG00000289017	ENSG00000279765.3:ENSG00000173575.22:ENSG00000289017.1	ENST00000629685.2:ENST00000630790.1:ENST00000626874.2:ENST00000394196.9:ENST00000635856.1:ENST00000420239.7:ENST00000628375.2:ENST00000625990.3:ENST00000626782.2:ENST00000685045.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA:processed_transcript	10	149	2	2.35316	2.3717800000000002	2.3904	0.00290171	8.28744e-4	0.0478075	0.0263691
chr17	47679641	47679735	6622906	0	+	0.393617	(0.378,0.408]	chr17	646108	14	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	KPNB1	ENSG00000108424.11	ENST00000535458.6:ENST00000583648.6:ENST00000290158.9:ENST00000540627.5:ENST00000582097.5:ENST00000677341.1:ENST00000580573.2:ENST00000580158.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	98	2	1.72469	2.371775	3.01886	0.0155	7.99379e-4	0.100909	0.0258804
chr1	744627	744727	357412	0	-	0.46	(0.44,0.476]	chr1	41158	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ENSG00000230021:ENSG00000228327	ENSG00000230021.10:ENSG00000228327.4	ENST00000634337.2:ENST00000635509.2:ENST00000506640.2	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene:transcribed_unprocessed_pseudogene	processed_transcript	10	129	2	2.28605	2.37176	2.45747	0.00206758	6.55527e-4	0.0411504	0.0232396
chr1	52144601	52144701	101633	0	+	0.31	(0.28,0.32]	chr1	13461	18	INTRON	INTRON	ZFYVE9	ENSG00000157077.16	ENST00000287727.8:ENST00000371591.2:ENST00000357206.6:ENST00000361625.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	85	2	2.14534	2.3717550000000003	2.59817	0.0117054	0.00753816	0.0962115	0.0748659
chr15	68119963	68120063	6056613	0	+	0.45	(0.44,0.476]	chr15	576567	317	INTRON	INTRON	PIAS1	ENSG00000033800.14	ENST00000564915.5:ENST00000249636.11:ENST00000562190.1:ENST00000545237.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	57	2	1.83899	2.371695	2.9044	0.0589734	0.00132926	0.167915	0.0335085
chr3	44763673	44763773	1412237	0	+	0.47	(0.44,0.476]	chr3	148150	14	INTRON	INTRON	KIF15	ENSG00000163808.17	ENST00000438321.5:ENST00000326047.9:ENST00000481166.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	116	2	2.10752	2.3716600000000003	2.6358	0.0045456	5.12141e-4	0.0595107	0.0203407
chr4	39713462	39713562	1953145	0	+	0.23	[0,0.28]	chr4	195630	147	INTRON	INTRON	UBE2K	ENSG00000078140.14	ENST00000510934.5:ENST00000261427.10:ENST00000438068.6:ENST00000513231.5:ENST00000503368.5:ENST00000445950.2:ENST00000510719.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	97	2	2.22743	2.371635	2.51584	0.0115397	0.0097118	0.0889104	0.0875962
chr21	39347292	39347378	7465687	0	-	0.209302	[0,0.28]	chr21	760603	1	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HMGN1	ENSG00000205581.11	ENST00000492280.5:ENST00000431390.5:ENST00000486741.5:ENST00000380749.10:ENST00000288344.14:ENST00000652622.1:ENST00000436324.5:ENST00000380748.5:ENST00000419378.5:ENST00000489072.5:ENST00000482192.5:ENST00000380747.5:ENST00000485550.5:ENST00000490032.5:ENST00000443046.5:ENST00000464078.5:ENST00000491183.5:ENST00000479586.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	17	317	2	2.16911	2.3716	2.57409	0.00102656	6.5269e-4	0.0294094	0.0233335
chr2	235496747	235496847	1041362	0	+	0.39	(0.378,0.408]	chr2	111217	15	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	83	2	2.20712	2.37157	2.53602	0.00978751	0.0020933	0.0835427	0.0424943
chr4	138187041	138187141	2245274	0	-	0.41	(0.408,0.44]	chr4	219484	14	INTRON	INTRON	SLC7A11	ENSG00000151012.13	ENST00000280612.9:ENST00000509248.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	61	2	2.22819	2.371555	2.51492	0.0329839	0.00373083	0.133816	0.0561984
chr4	126547314	126547414	2236182	0	-	0.37	(0.35,0.378]	chr4	219023	818	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	5	75	2	1.56287	2.371455	3.18004	0.0697648	3.8703e-4	0.184298	0.0177751
chr19	12946420	12946520	7022541	0	+	0.38	(0.378,0.408]	chr19	698309	4	SS5_PROX	SS5_PROX:INTRON	RAD23A	ENSG00000179262.10	ENST00000591499.5:ENST00000651137.1:ENST00000586534.6:ENST00000588329.5:ENST00000316856.7:ENST00000592268.5:ENST00000593114.5:ENST00000588826.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	43	2	1.89621	2.37142	2.84663	0.0488044	0.0133954	0.173377	0.0946278
chr6	167039503	167039603	3033780	0	+	0.4	(0.378,0.408]	chr6	282693	2	SS3_PROX	SS3_PROX:INTRON	CEP43	ENSG00000213066.13	ENST00000622353.4:ENST00000366847.9:ENST00000349556.4	protein_coding	protein_coding	protein_coding	protein_coding	3	43	2	1.89621	2.37142	2.84663	0.0488044	0.0133954	0.173377	0.0946278
chr2	55020898	55020997	1121111	0	-	0.585859	(0.57,1]	chr2	120149	65	INTRON	INTRON	RTN4	ENSG00000115310.19	ENST00000404909.5:ENST00000394611.6:ENST00000317610.11:ENST00000357732.8:ENST00000337526.11:ENST00000357376.7:ENST00000405240.5:ENST00000438462.1	protein_coding	protein_coding	protein_coding	protein_coding	8	54	2	2.24116	2.3714	2.50164	0.00307807	8.10609e-4	0.0496321	0.0259609
chr3	5178163	5178263	1354143	0	+	0.35	(0.32,0.35]	chr3	142392	1	SS3_PROX	SS3_PROX:INTRON	ARL8B	ENSG00000134108.14	ENST00000256496.8:ENST00000455168.5:ENST00000419534.2:ENST00000468010.1:ENST00000476343.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	109	2	2.09793	2.3713699999999998	2.64481	0.0156788	5.97546e-4	0.101453	0.0222617
chr7	99565304	99565404	3362761	0	+	0.48	(0.476,0.515]	chr7	314147	7	INTRON	INTRON	ZNF655	ENSG00000197343.11	ENST00000626122.2:ENST00000454654.5:ENST00000412636.5:ENST00000252713.9:ENST00000449244.5:ENST00000493947.5:ENST00000425063.5:ENST00000493277.5:ENST00000422164.5:ENST00000427931.5:ENST00000422647.5:ENST00000424881.5:ENST00000394163.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	155	2	1.93591	2.37128	2.80665	0.0038383	1.40441e-4	0.0562562	0.010777
chr3	45011339	45011405	1413763	0	+	0.333333	(0.32,0.35]	chr3	148409	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	EXOSC7	ENSG00000075914.13	ENST00000461361.5:ENST00000265564.8:ENST00000468667.5:ENST00000491476.5:ENST00000481405.1:ENST00000486727.1:ENST00000459856.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	78	2	2.03198	2.3712549999999997	2.71053	0.0193728	0.00346747	0.108916	0.0539802
chr12	111568079	111568179	5412920	0	-	0.49	(0.476,0.515]	chr12	516941	33	INTRON	INTRON	ATXN2	ENSG00000204842.18	ENST00000642389.2:ENST00000608853.5:ENST00000672613.1:ENST00000673436.1:ENST00000643669.2:ENST00000616825.4:ENST00000389153.10:ENST00000550104.5:ENST00000483311.6:ENST00000672335.1:ENST00000673557.1:ENST00000673283.1:ENST00000673449.1:ENST00000535949.5:ENST00000542287.6:ENST00000644883.1:ENST00000647305.1:ENST00000671792.1:ENST00000392645.6:ENST00000672105.1:ENST00000549455.1:ENST00000548492.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	55	2	2.365	2.371155	2.37731	0.0128901	0.0111793	0.0937192	0.0926667
chr1	193026690	193026788	612536	0	-	0.316327	(0.28,0.32]	chr1	72454	24	INTRON	INTRON	UCHL5	ENSG00000116750.14	ENST00000367455.8:ENST00000367454.6:ENST00000420791.5:ENST00000367450.7:ENST00000367451.8:ENST00000367449.5:ENST00000367448.5:ENST00000443327.5:ENST00000421683.1	protein_coding	protein_coding	protein_coding	protein_coding	6	97	2	2.2058	2.37114	2.53648	0.00925866	0.00496409	0.0817766	0.0646039
chr11	85999948	86000045	5014133	0	-	0.371134	(0.35,0.378]	chr11	472953	27	INTRON	INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000630913.2:ENST00000529760.5:ENST00000528398.5:ENST00000356360.9:ENST00000529016.5:ENST00000530542.1	protein_coding	protein_coding	protein_coding	protein_coding	9	128	2	2.15696	2.37113	2.5853	0.00672191	3.66218e-4	0.070858	0.0171615
chr12	53026706	53026802	5141630	0	+	0.5	(0.476,0.515]	chr12	485021	10	INTRON	INTRON	EIF4B	ENSG00000063046.18	ENST00000549077.5:ENST00000262056.14:ENST00000420463.7:ENST00000416762.7:ENST00000550704.5:ENST00000549481.5:ENST00000552490.5:ENST00000550390.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	56	2	1.63962	2.37113	3.10264	0.0346854	0.00543163	0.148144	0.0645052
chrX	114047062	114047162	7868512	0	-	0.47	(0.44,0.476]	chrX	801557	42	INTRON	INTRON	XACT	ENSG00000241743.4	ENST00000468762.3:ENST00000649506.1	lncRNA	lncRNA	lncRNA	lncRNA	5	67	2	2.03266	2.37113	2.7096	0.0155853	0.00376205	0.109411	0.0539118
chr2	61386415	61386514	1129703	0	-	0.292929	(0.28,0.32]	chr2	121474	27	INTRON	INTRON	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000453133.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	87	2	2.09794	2.3710899999999997	2.64424	0.0340483	0.00159565	0.134863	0.0367961
chr12	26933560	26933659	5298690	0	-	0.363636	(0.35,0.378]	chr12	504041	43	INTRON	INTRON	INTS13	ENSG00000064102.15	ENST00000261191.12:ENST00000544548.5:ENST00000538727.5:ENST00000537336.1	protein_coding	protein_coding	protein_coding	protein_coding	3	45	2	2.34278	2.371085	2.39939	0.0458078	0.0129593	0.149888	0.0991015
chr9	123122722	123122821	4338994	0	-	0.373737	(0.35,0.378]	chr9	398836	5	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	STRBP	ENSG00000165209.19	ENST00000478973.6:ENST00000471564.6:ENST00000496533.5:ENST00000348403.10:ENST00000447404.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	45	2	2.34278	2.371085	2.39939	0.0458078	0.0129593	0.149888	0.0991015
chr11	117168486	117168584	4869339	0	+	0.397959	(0.378,0.408]	chr11	454464	9	UTR3	UTR3:EXON_MRNA:INTRON	PAFAH1B2	ENSG00000168092.14	ENST00000419197.6:ENST00000527958.6:ENST00000529887.6:ENST00000526888.1:ENST00000530272.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	71	2	1.38218	2.37108	3.35998	0.0444424	0.00230615	0.162728	0.0428247
chr16	67725735	67725834	6504847	0	-	0.484848	(0.476,0.515]	chr16	629563	28	UTR3	UTR3:EXON_MRNA	RANBP10	ENSG00000141084.12	ENST00000317506.8	protein_coding	protein_coding	protein_coding	protein_coding	4	54	2	2.17347	2.3710750000000003	2.56868	0.0256676	0.010447	0.133676	0.0855102
chr10	35354180	35354280	4424679	0	+	0.46	(0.44,0.476]	chr10	407899	166	INTRON	INTRON	CCNY	ENSG00000108100.18	ENST00000374706.5:ENST00000490012.6:ENST00000493157.6:ENST00000374704.8:ENST00000265375.13:ENST00000339497.7:ENST00000492478.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	164	2	1.63619	2.37104	3.10589	0.0132839	1.29835e-5	0.0944742	0.00266543
chr11	9144546	9144636	4907834	0	-	0.555556	(0.515,0.57]	chr11	460001	4	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DENND5A	ENSG00000184014.9	ENST00000328194.8:ENST00000529977.5:ENST00000681203.1:ENST00000530780.2:ENST00000680358.1:ENST00000679999.1:ENST00000679458.1:ENST00000531747.2:ENST00000680470.1:ENST00000680599.1:ENST00000680554.1:ENST00000679745.1:ENST00000679926.1:ENST00000679773.1:ENST00000680252.1:ENST00000525784.6:ENST00000681425.1:ENST00000681158.1:ENST00000679460.1:ENST00000681371.1:ENST00000680791.1:ENST00000679568.1:ENST00000679446.1:ENST00000681639.1:ENST00000680294.1:ENST00000680742.1:ENST00000680885.1:ENST00000680576.1:ENST00000530044.5:ENST00000527700.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	58	2	1.69407	2.371025	3.04798	0.0459452	5.9198e-4	0.149888	0.0221485
chr7	10530808	10530908	3482087	0	-	0.34	(0.32,0.35]	chr7	325766	777	INTRON	INTRON	MGC4859	ENSG00000283117.1	ENST00000634803.1	lncRNA	lncRNA	lncRNA	lncRNA	3	48	2	1.83416	2.37101	2.90786	0.0631198	0.00993008	0.176946	0.0877296
chr1	228089727	228089822	330840	0	+	0.547368	(0.515,0.57]	chr1	38115	11	INTRON	INTRON	ARF1	ENSG00000143761.16	ENST00000540651.5:ENST00000272102.10:ENST00000470670.5:ENST00000478424.5:ENST00000470558.5:ENST00000473949.5:ENST00000477451.5:ENST00000478336.5:ENST00000541182.1:ENST00000469235.5:ENST00000473546.1:ENST00000482962.5:ENST00000497165.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	87	2	2.34011	2.370945	2.40178	0.00382306	0.00106662	0.0542786	0.0300133
chr11	86020880	86020979	5014354	0	-	0.262626	[0,0.28]	chr11	472995	56	INTRON	INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000630913.2:ENST00000528398.5:ENST00000356360.9:ENST00000534412.5:ENST00000531771.5:ENST00000531558.1:ENST00000531930.5:ENST00000532041.5:ENST00000525162.5:ENST00000528256.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	81	2	1.98291	2.37089	2.75887	0.0494143	0.00360252	0.156195	0.0552588
chr4	139116348	139116448	2246733	0	-	0.36	(0.35,0.378]	chr4	219571	3	SS5_PROX	SS5_PROX:INTRON	ELF2	ENSG00000109381.21	ENST00000394235.6:ENST00000686138.1:ENST00000379550.5:ENST00000511184.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	46	2	2.24535	2.37089	2.49643	0.0647516	0.00752974	0.179192	0.0773151
chr15	87691273	87691373	6256467	0	-	0.36	(0.35,0.378]	chr15	596826	1479	INTRON	INTRON	ENSG00000259560	ENSG00000259560.2	ENST00000665121.1:ENST00000560439.1	lncRNA	lncRNA	lncRNA	lncRNA	3	45	2	1.87717	2.3708400000000003	2.86451	0.0555068	0.0109111	0.165463	0.0923273
chr4	94239509	94239608	1997833	0	+	0.353535	(0.35,0.378]	chr4	199417	21	INTRON	INTRON	SMARCAD1	ENSG00000163104.18	ENST00000359052.8:ENST00000457823.6:ENST00000354268.9:ENST00000510105.5:ENST00000394961.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	45	2	1.87717	2.3708400000000003	2.86451	0.0555068	0.0109111	0.165463	0.0923273
chr3	47095673	47095771	1680908	0	-	0.234694	[0,0.28]	chr3	171569	71	INTRON	INTRON	SETD2	ENSG00000181555.22	ENST00000691544.1:ENST00000638947.2:ENST00000686876.1:ENST00000431180.5:ENST00000409792.4:ENST00000330022.11:ENST00000686773.1:ENST00000685005.1:ENST00000690461.1:ENST00000685505.1:ENST00000692883.1:ENST00000693321.1:ENST00000688290.1:ENST00000691902.1:ENST00000690157.1:ENST00000692362.1:ENST00000685237.1:ENST00000445387.5:ENST00000685399.1:ENST00000484689.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	72	2	2.09841	2.37075	2.64309	0.0308646	0.0151026	0.13151	0.108435
chr14	49586346	49586412	5885778	0	-	0.5	(0.476,0.515]	chr14	558485	1	UTR5	UTR5:EXON_MRNA:SS3_PROX:INTRON	RPS29	ENSG00000213741.11	ENST00000396020.7:ENST00000556230.2:ENST00000245458.11:ENST00000557111.5:ENST00000557367.2:ENST00000554075.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	20	219	2	1.8621	2.3707350000000003	2.87937	0.00122963	9.30291e-5	0.0325986	0.00857086
chr1	86970634	86970733	154154	0	+	0.50505	(0.476,0.515]	chr1	16962	118	INTRON	INTRON	HS2ST1	ENSG00000153936.18	ENST00000370550.10:ENST00000370551.8:ENST00000687893.1:ENST00000693745.1:ENST00000689904.1:ENST00000690674.1:ENST00000591456.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	66	2	1.93059	2.3706750000000003	2.81076	0.023762	0.00203568	0.118822	0.0417667
chr5	28877029	28877129	2330520	0	+	0.32	(0.28,0.32]	chr5	225135	665	INTRON	INTRON	LINC02109	ENSG00000259786.7	ENST00000658190.1	lncRNA	lncRNA	lncRNA	lncRNA	7	117	2	2.28491	2.370625	2.45634	0.0091216	0.0016783	0.0811564	0.0380861
chr7	157215572	157215672	3454722	0	+	0.35	(0.32,0.35]	chr7	322975	73	INTRON	INTRON	UBE3C	ENSG00000009335.18	ENST00000348165.10:ENST00000469336.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	66	2	1.84365	2.37054	2.89743	0.0184323	0.0127608	0.116493	0.0926667
chr15	28162893	28162993	6122395	0	-	0.41	(0.408,0.44]	chr15	583065	4	SS5_PROX	SS5_PROX:INTRON	HERC2	ENSG00000128731.18	ENST00000261609.13:ENST00000650509.1:ENST00000569772.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	57	2	1.84301	2.3704799999999997	2.89795	0.0174311	0.0110735	0.112689	0.0873897
chr21	43877144	43877244	7413909	0	+	0.44	(0.408,0.44]	chr21	755688	94	INTRON	INTRON	AGPAT3	ENSG00000160216.21	ENST00000291572.13:ENST00000448287.5	protein_coding	protein_coding	protein_coding	protein_coding	4	56	2	2.33431	2.37046	2.40661	0.0129219	0.011475	0.0990564	0.0888882
chr22	21439471	21439570	7481394	0	+	0.474747	(0.44,0.476]	chr22	763209	184	INTRON	INTRON	HIC2	ENSG00000169635.10	ENST00000407464.7:ENST00000407598.2	protein_coding	protein_coding	protein_coding	protein_coding	7	84	2	1.92621	2.370415	2.81462	0.00813281	0.00247064	0.0810802	0.0446195
chr12	24870934	24871034	5297123	0	-	0.48	(0.476,0.515]	chr12	503853	206	INTRON	INTRON	BCAT1	ENSG00000060982.15	ENST00000261192.12:ENST00000538118.5:ENST00000342945.9:ENST00000539282.5:ENST00000539780.5:ENST00000544418.1:ENST00000612790.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:processed_transcript	7	84	2	2.04194	2.3704	2.69886	0.00499341	0.00385209	0.0646039	0.0542786
chr14	55286856	55286955	5725950	0	+	0.363636	(0.35,0.378]	chr14	543454	14	INTRON	INTRON	FBXO34	ENSG00000178974.11	ENST00000681400.1:ENST00000681904.1:ENST00000679934.1:ENST00000681074.1:ENST00000680682.1:ENST00000680658.1:ENST00000313833.5:ENST00000554940.1:ENST00000440021.1:ENST00000555087.1:ENST00000557647.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	92	2	1.91549	2.370375	2.82526	0.00887698	0.00269503	0.0849778	0.0466389
chr6	169664632	169664700	3266739	0	-	0.367647	(0.35,0.378]	chr6	303212	1	EXON_MRNA	EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	WDR27	ENSG00000184465.16	ENST00000448612.6:ENST00000648472.1:ENST00000423258.5:ENST00000647790.1:ENST00000546525.5:ENST00000647873.1:ENST00000649303.1:ENST00000647889.1:ENST00000648017.1:ENST00000486490.1:ENST00000476322.1:ENST00000496752.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	92	2	1.91549	2.370375	2.82526	0.00887698	0.00269503	0.0849778	0.0466389
chr2	180997040	180997140	936136	0	+	0.33	(0.32,0.35]	chr2	102627	71	INTRON	INTRON	UBE2E3	ENSG00000170035.16	ENST00000602303.5:ENST00000602959.5:ENST00000602479.5:ENST00000392415.6:ENST00000602291.5:ENST00000410062.9:ENST00000602499.5:ENST00000602710.5:ENST00000602762.5:ENST00000602888.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	58	2	1.55682	2.3703700000000003	3.18392	0.0724487	0.00379806	0.188101	0.0562562
chr6	37171491	37171591	2855265	0	+	0.73	(0.57,1]	chr6	269925	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	PIM1	ENSG00000137193.14	ENST00000373509.6	protein_coding	protein_coding	protein_coding	protein_coding	15	93	2	2.18162	2.37033	2.55904	2.57688e-4	2.5313e-4	0.0147438	0.0143113
chr1	20785885	20785985	389855	0	-	0.4	(0.378,0.408]	chr1	46583	3	SS5_PROX	SS5_PROX:INTRON	HP1BP3	ENSG00000127483.19	ENST00000438032.6:ENST00000312239.10:ENST00000424732.5:ENST00000417710.5:ENST00000375000.5:ENST00000437575.5:ENST00000419490.5:ENST00000414993.1:ENST00000443615.1	protein_coding	protein_coding	protein_coding	protein_coding	10	125	2	2.17649	2.37031	2.56413	0.0024299	0.00117925	0.0444645	0.031662
chr7	117020319	117020415	3386659	0	+	0.479167	(0.476,0.515]	chr7	317141	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:PRIMIRNA:INTRON	ST7:ST7-OT4:MIR6132	ENSG00000004866.22:ENSG00000214188.9:ENSG00000283923.1	ENST00000393446.6:ENST00000265437.9:ENST00000393451.7:ENST00000438863.5:ENST00000393449.5:ENST00000443979.5:ENST00000323984.8:ENST00000417919.5:ENST00000446490.5:ENST00000471110.5:ENST00000422922.5:ENST00000432298.5:ENST00000449366.5:ENST00000622083.1:ENST00000487459.5:ENST00000393443.5:ENST00000467538.5:ENST00000434836.5:ENST00000465133.5:ENST00000477742.5:ENST00000462544.1:ENST00000393444.7:ENST00000393447.8	miRNA	protein_coding	miRNA:protein_coding:lncRNA	protein_coding:nonsense_mediated_decay:lncRNA:processed_transcript:primary_miRNA	4	56	2	1.92984	2.3703000000000003	2.81076	0.0466474	0.00203568	0.151522	0.0417667
chr12	4303769	4303868	5067716	0	+	0.535354	(0.515,0.57]	chr12	478308	39	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	CCND2	ENSG00000118971.9	ENST00000676411.1:ENST00000676279.1:ENST00000261254.8:ENST00000675880.1:ENST00000675468.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	73	2	2.15429	2.370265	2.58624	0.00526399	0.00272344	0.0633874	0.0481781
chr16	29526368	29526468	6470829	0	-	0.4	(0.378,0.408]	chr16	625147	205	INTRON	INTRON	ENSG00000288632	ENSG00000288632.1	ENST00000675579.1	lncRNA	lncRNA	lncRNA	lncRNA	10	124	2	1.91219	2.37025	2.82831	0.00434774	7.49551e-4	0.0602259	0.0251179
chr4	144001878	144001974	2251572	0	-	0.552083	(0.515,0.57]	chr4	219974	2	INTRON	INTRON	GYPB	ENSG00000250361.9	ENST00000502664.6:ENST00000506679.5:ENST00000429670.3:ENST00000507009.5:ENST00000513128.5:ENST00000505583.5:ENST00000506516.6:ENST00000513557.5:ENST00000513677.5:ENST00000511198.5:ENST00000504951.6:ENST00000510196.6:ENST00000503255.5:ENST00000638448.1:ENST00000508618.5:ENST00000508841.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	43	2	1.75372	2.3702449999999997	2.98677	0.0386904	0.00632549	0.14279	0.0722266
chr22	16646767	16646867	7473818	0	+	0.47	(0.44,0.476]	chr22	762014	2	SS3_PROX	SS3_PROX:INTRON	TPTEP1	ENSG00000100181.22	ENST00000558085.6:ENST00000400593.6:ENST00000426585.5:ENST00000383140.7	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	10	119	2	1.8752	2.370205	2.86521	0.00504991	5.69284e-4	0.0646039	0.0220462
chr1	28511780	28511879	57233	0	+	0.50505	(0.476,0.515]	chr1	7392	10	INTRON	INTRON	RCC1	ENSG00000180198.17	ENST00000398958.6:ENST00000649185.1:ENST00000427469.5:ENST00000683442.1:ENST00000434290.6:ENST00000373833.10:ENST00000419074.5	protein_coding	protein_coding	protein_coding	protein_coding	6	77	2	2.06011	2.37017	2.68023	0.00869033	0.00353671	0.0788605	0.0546236
chr15	52548440	52548540	6177106	0	-	0.4	(0.378,0.408]	chr15	588878	15	UTR3	UTR3:EXON_MRNA	ARPP19	ENSG00000128989.11	ENST00000566423.5:ENST00000249822.9	protein_coding	protein_coding	protein_coding	protein_coding	9	115	2	2.12424	2.37007	2.6159	0.00224944	0.00194844	0.0435778	0.0400465
chr11	9177091	9177185	4908177	0	-	0.446809	(0.44,0.476]	chr11	460062	3	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	DENND5A	ENSG00000184014.9	ENST00000328194.8:ENST00000681203.1:ENST00000530780.2:ENST00000680358.1:ENST00000679999.1:ENST00000680470.1:ENST00000680599.1:ENST00000680554.1:ENST00000679745.1:ENST00000680252.1:ENST00000681425.1:ENST00000681158.1:ENST00000679460.1:ENST00000679568.1:ENST00000679446.1:ENST00000680294.1:ENST00000680742.1:ENST00000680885.1:ENST00000680576.1:ENST00000530044.5:ENST00000526707.5:ENST00000681173.1:ENST00000527896.1:ENST00000530867.2:ENST00000681915.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	55	2	2.24189	2.37006	2.49823	0.0193405	0.00718224	0.108861	0.0756118
chr6	109378271	109378371	3185873	0	-	0.52	(0.515,0.57]	chr6	296675	3	SS3_PROX	SS3_PROX:INTRON	CD164	ENSG00000135535.17	ENST00000310786.10:ENST00000413644.6:ENST00000504373.2:ENST00000324953.9:ENST00000275080.11:ENST00000499860.6:ENST00000512821.5:ENST00000506649.5:ENST00000512212.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	57	2	2.32967	2.369945	2.41022	0.0133671	0.00332441	0.0946278	0.0528673
chr1	29042771	29042870	60251	0	+	0.333333	(0.32,0.35]	chr1	7705	14	INTRON	INTRON	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000647918.1:ENST00000646800.1:ENST00000644342.1:ENST00000646189.1:ENST00000482464.6:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000646260.1:ENST00000373798.5:ENST00000644600.1:ENST00000649674.1:ENST00000643173.1:ENST00000343067.9:ENST00000644780.1:ENST00000650265.1:ENST00000648181.1:ENST00000643604.1:ENST00000648891.1:ENST00000373797.2:ENST00000349460.9:ENST00000645184.1:ENST00000645111.1:ENST00000643302.1:ENST00000645999.1:ENST00000642643.1:ENST00000636666.1:ENST00000644848.1:ENST00000644470.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	17	261	2	1.98826	2.369875	2.75149	0.00489502	1.84565e-5	0.0609332	0.00328737
chr21	46203641	46203740	7470611	0	-	0.626263	(0.57,1]	chr21	761464	70	INTRON	INTRON	LSS	ENSG00000160285.15	ENST00000356396.8:ENST00000397728.8:ENST00000457828.6:ENST00000522411.5	protein_coding	protein_coding	protein_coding	protein_coding	11	73	2	2.35463	2.36986	2.38509	8.71651e-4	3.86224e-4	0.0268326	0.0182867
chr5	140403371	140403471	2502841	0	+	0.48	(0.476,0.515]	chr5	239166	7	INTRON	INTRON	ANKHD1	ENSG00000131503.21	ENST00000297183.10:ENST00000616482.4:ENST00000360839.7:ENST00000421134.5:ENST00000394723.7:ENST00000511151.5:ENST00000394722.7	protein_coding	protein_coding	protein_coding	protein_coding	4	56	2	2.19809	2.3698300000000003	2.54157	0.020317	0.00697457	0.121522	0.0718189
chr3	48526566	48526665	1688603	0	-	0.40404	(0.378,0.408]	chr3	172531	5	INTRON	INTRON	PFKFB4	ENSG00000114268.12	ENST00000232375.8:ENST00000490115.5:ENST00000383734.6:ENST00000416568.5:ENST00000417753.5:ENST00000445633.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	95	2	2.04001	2.36973	2.69945	0.00996995	9.70462e-4	0.08427	0.0286926
chr2	113919693	113919792	854543	0	+	0.272727	[0,0.28]	chr2	95910	23	INTRON	INTRON	ACTR3	ENSG00000115091.12	ENST00000443297.5:ENST00000263238.7:ENST00000415792.5:ENST00000446821.5:ENST00000535589.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	93	2	1.83959	2.369705	2.89982	0.0158893	0.0146743	0.106556	0.101453
chr10	80197530	80197630	4658181	0	-	0.47	(0.44,0.476]	chr10	429153	13	INTRON	INTRON	ANXA11	ENSG00000122359.18	ENST00000372231.7:ENST00000438331.5:ENST00000422982.8:ENST00000463657.1:ENST00000474545.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	50	2	1.71574	2.3697	3.02366	0.045256	0.00603307	0.149888	0.0700813
chr2	128126665	128126762	862838	0	+	0.463918	(0.44,0.476]	chr2	96723	31	INTRON	INTRON	UGGT1	ENSG00000136731.13	ENST00000259253.11:ENST00000438277.5:ENST00000376723.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	50	2	1.71574	2.3697	3.02366	0.045256	0.00603307	0.149888	0.0700813
chr3	99828040	99828140	1462002	0	+	0.31	(0.28,0.32]	chr3	153488	96	INTRON	INTRON	CMSS1	ENSG00000184220.12	ENST00000463526.1:ENST00000421999.8:ENST00000491299.5:ENST00000496116.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	67	2	1.99988	2.3696650000000004	2.73945	0.0228757	0.017681	0.118056	0.11319
chr19	4450193	4450291	7120188	0	-	0.428571	(0.408,0.44]	chr19	716313	7	INTRON	INTRON	UBXN6	ENSG00000167671.12	ENST00000591919.5:ENST00000301281.11:ENST00000394765.7:ENST00000592358.1:ENST00000592515.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	43	2	2.18807	2.3695500000000003	2.55103	0.0708044	0.00587353	0.184528	0.0690758
chr9	135937428	135937525	4372317	0	-	0.43299	(0.408,0.44]	chr9	402502	36	INTRON	INTRON	UBAC1	ENSG00000130560.9	ENST00000371756.4:ENST00000489050.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	93	2	2.23639	2.369545	2.5027	0.00445002	0.00238178	0.0592079	0.0449397
chr3	150413100	150413200	1533472	0	+	0.33	(0.32,0.35]	chr3	159801	14	INTRON	INTRON	TSC22D2	ENSG00000196428.13	ENST00000361875.8:ENST00000688009.1:ENST00000480589.1:ENST00000466814.1:ENST00000485421.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	58	2	2.10695	2.369525	2.6321	0.0268	0.0127483	0.123349	0.0987441
chr5	55338221	55338320	2355394	0	+	0.383838	(0.378,0.408]	chr5	227152	90	INTRON	INTRON	MTREX	ENSG00000039123.16	ENST00000230640.10:ENST00000506750.5:ENST00000504997.1:ENST00000505565.5:ENST00000502953.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	51	2	1.8374	2.36951	2.90162	0.0299228	0.0113157	0.142135	0.0886121
chr9	137576802	137576902	4377604	0	-	0.58	(0.57,1]	chr9	403653	4	SS3_PROX	SS3_PROX:INTRON	DPH7	ENSG00000148399.13	ENST00000277540.7:ENST00000479650.5:ENST00000475100.5:ENST00000472113.5:ENST00000467768.5:ENST00000470855.5:ENST00000481839.5:ENST00000476303.1:ENST00000460572.1:ENST00000491359.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	44	2	1.86974	2.36933	2.86892	0.00983148	0.00125753	0.0877296	0.0323608
chr19	24051802	24051900	7044044	0	+	0.5	(0.476,0.515]	chr19	702356	20	EXON_LNCRNA	EXON_LNCRNA:INTRON	ENSG00000268362:ZNF254	ENSG00000268362.6:ENSG00000213096.11	ENST00000664647.1:ENST00000613065.4:ENST00000656993.1:ENST00000666101.1:ENST00000653003.1:ENST00000666488.1:ENST00000594934.6:ENST00000654353.1:ENST00000662140.1:ENST00000668060.1:ENST00000660137.1:ENST00000669127.1:ENST00000652968.1:ENST00000670905.1:ENST00000658858.1:ENST00000654594.1:ENST00000654372.1:ENST00000652837.1:ENST00000654611.1:ENST00000597683.1:ENST00000671141.1:ENST00000653308.1:ENST00000659757.1:ENST00000661386.1:ENST00000668656.1:ENST00000663903.1:ENST00000668169.1:ENST00000663458.1:ENST00000662903.1:ENST00000665638.1:ENST00000670058.1:ENST00000668701.1:ENST00000655664.1:ENST00000666861.1:ENST00000664627.1:ENST00000661650.1:ENST00000667700.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	3	45	2	2.28264	2.3693099999999996	2.45598	0.0534132	0.00945755	0.179876	0.0817766
chr5	139310042	139310140	2499546	0	+	0.326531	(0.32,0.35]	chr5	238922	1	EXON_MRNA	EXON_MRNA:INTRON	MATR3	ENSG00000280987.4:ENSG00000015479.20	ENST00000509990.5:ENST00000506147.5:ENST00000512107.5:ENST00000361059.7:ENST00000394800.6:ENST00000502929.5:ENST00000504203.5:ENST00000509644.5:ENST00000512876.5:ENST00000513678.5:ENST00000513121.1:ENST00000504045.5:ENST00000504311.5:ENST00000502499.5:ENST00000510056.5:ENST00000511249.5:ENST00000394805.8:ENST00000507860.1:ENST00000509918.5:ENST00000503811.5:ENST00000511978.5:ENST00000618441.5:ENST00000514528.5:ENST00000504643.5:ENST00000515833.2:ENST00000514402.1:ENST00000505625.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	89	2	2.24224	2.36917	2.4961	0.00967886	0.00393422	0.0828038	0.0572563
chr18	1361834	1361934	6941801	0	-	0.31	(0.28,0.32]	chr18	686601	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	LINC00470	ENSG00000132204.14	ENST00000657423.1:ENST00000657618.1:ENST00000669242.1:ENST00000660475.1:ENST00000653775.1:ENST00000661931.1:ENST00000412816.7:ENST00000667416.1:ENST00000661852.1:ENST00000661646.1:ENST00000667776.1:ENST00000654559.1:ENST00000661233.1:ENST00000653213.1:ENST00000659094.1:ENST00000660964.1:ENST00000577403.6:ENST00000669153.1:ENST00000657121.1:ENST00000655957.1:ENST00000659289.1:ENST00000665133.1:ENST00000671558.1:ENST00000666542.1:ENST00000663512.1:ENST00000669312.1:ENST00000581430.5:ENST00000658090.1:ENST00000667225.1	lncRNA	lncRNA	lncRNA	lncRNA	9	149	2	2.04882	2.369135	2.68945	0.00796456	5.50287e-4	0.0764653	0.0213346
chrX	153758498	153758597	7911281	0	-	0.525253	(0.515,0.57]	chrX	805122	196	INTRON	INTRON	PLXNB3-AS1	ENSG00000232725.1	ENST00000434284.1	lncRNA	lncRNA	lncRNA	lncRNA	7	76	2	2.10989	2.36903	2.62817	0.004048	0.00378898	0.0578376	0.0542459
chr7	119664465	119664565	3627981	0	-	0.24	[0,0.28]	chr7	337315	1640	INTRON	INTRON	LINC02476	ENSG00000225546.6	ENST00000660268.1	lncRNA	lncRNA	lncRNA	lncRNA	4	71	2	1.79953	2.369015	2.9385	0.0377477	0.0142776	0.156608	0.0963703
chr3	119458086	119458156	1791929	0	-	0.414286	(0.408,0.44]	chr3	179950	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	TMEM39A	ENSG00000176142.13	ENST00000319172.10:ENST00000438581.6:ENST00000491685.5:ENST00000486159.5:ENST00000486235.5:ENST00000468676.5:ENST00000490099.5:ENST00000497993.5:ENST00000482162.1:ENST00000461654.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	50	2	2.08376	2.3689799999999996	2.6542	0.0227514	0.0129886	0.117618	0.0991656
chr20	47332658	47332758	7349271	0	-	0.38	(0.378,0.408]	chr20	749346	137	INTRON	INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000435836.5:ENST00000446894.5:ENST00000441977.1	protein_coding	protein_coding	protein_coding	protein_coding	15	142	2	1.11861	2.36895	3.61929	0.0525069	3.16433e-5	0.160709	0.00449886
chr12	96279943	96280042	5394051	0	-	0.40404	(0.378,0.408]	chr12	514355	18	UTR3	UTR3:EXON_MRNA	CDK17	ENSG00000059758.8	ENST00000261211.8	protein_coding	protein_coding	protein_coding	protein_coding	8	80	2	1.73221	2.368945	3.00568	0.00963227	0.00811866	0.086971	0.0766625
chr1	185053487	185053587	275638	0	+	0.39	(0.378,0.408]	chr1	32263	68	INTRON	INTRON	RNF2	ENSG00000121481.11	ENST00000367509.8:ENST00000498201.1:ENST00000367510.8:ENST00000453650.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	52	2	1.68393	2.3689299999999998	3.05393	0.0503034	0.00551532	0.156383	0.0672816
chr6	53332848	53332948	3108028	0	-	0.58	(0.57,1]	chr6	291049	368	INTRON	INTRON	ELOVL5	ENSG00000012660.14	ENST00000370918.8:ENST00000542638.5:ENST00000304434.11:ENST00000485336.5:ENST00000465983.5:ENST00000486973.1:ENST00000370913.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	35	2	2.16779	2.368875	2.56996	0.00900694	0.00499145	0.0803518	0.0646039
chr13	102605706	102605801	5532075	0	+	0.389474	(0.378,0.408]	chr13	528633	4	INTRON	INTRON	TPP2	ENSG00000134900.12	ENST00000376052.5:ENST00000651448.1:ENST00000376065.8:ENST00000652308.1:ENST00000490010.1:ENST00000651544.1:ENST00000651748.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	69	2	1.94906	2.368865	2.78867	0.023282	0.00226991	0.118176	0.0437013
chr15	41287413	41287474	6004420	0	+	0.393443	(0.378,0.408]	chr15	571256	2	EXON_LNCRNA	EXON_LNCRNA:SS3_PROX:INTRON	OIP5-AS1	ENSG00000247556.6	ENST00000558945.5:ENST00000500949.6:ENST00000561275.5:ENST00000560706.5:ENST00000559368.5:ENST00000561226.5:ENST00000557993.5:ENST00000501665.2	lncRNA	lncRNA	lncRNA	lncRNA	5	69	2	1.94906	2.368865	2.78867	0.023282	0.00226991	0.118176	0.0437013
chr21	34078128	34078228	7401138	0	+	0.4	(0.378,0.408]	chr21	753967	40	INTRON	INTRON	MRPS6:SLC5A3	ENSG00000243927.6:ENSG00000198743.7	ENST00000488492.5:ENST00000477091.5:ENST00000399312.3:ENST00000381151.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	69	2	1.94906	2.368865	2.78867	0.023282	0.00226991	0.118176	0.0437013
chr21	33454037	33454136	7440712	0	-	0.40404	(0.378,0.408]	chr21	759332	28	INTRON	INTRON	TMEM50B	ENSG00000142188.17	ENST00000420455.5:ENST00000542230.7:ENST00000441128.5:ENST00000442441.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	104	2	1.93616	2.368855	2.80155	0.00388841	0.00278307	0.0567949	0.0469265
chr3	15848783	15848883	1624335	0	-	0.41	(0.408,0.44]	chr3	168034	341	INTRON	INTRON	ANKRD28	ENSG00000206560.12	ENST00000399451.6:ENST00000412318.5:ENST00000439830.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	64	2	1.27662	2.36883	3.46104	0.0787183	0.00105552	0.198567	0.0299229
chr7	72912066	72912166	3330119	0	+	0.52	(0.515,0.57]	chr7	309565	206	INTRON	INTRON	POM121	ENSG00000196313.13	ENST00000627934.3:ENST00000395270.5	protein_coding	protein_coding	protein_coding	protein_coding	7	78	2	2.16051	2.36882	2.57713	0.0046825	0.00176427	0.0631419	0.0376652
chr21	39203242	39203340	7464397	0	-	0.428571	(0.408,0.44]	chr21	760379	3	INTRON	INTRON	BRWD1	ENSG00000185658.14	ENST00000333229.6:ENST00000342449.8:ENST00000446924.5:ENST00000380800.7:ENST00000424441.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	51	2	2.22268	2.3688000000000002	2.51492	0.0329839	0.00770925	0.133816	0.0784002
chr19	48809210	48809310	7199480	0	-	0.5	(0.476,0.515]	chr19	729940	5	INTRON	INTRON	BCAT2	ENSG00000105552.15	ENST00000545387.6:ENST00000316273.11:ENST00000402551.5:ENST00000597011.5:ENST00000599246.5:ENST00000598162.5:ENST00000601681.5:ENST00000601496.5:ENST00000596981.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	41	2	1.72558	2.368775	3.01197	0.0767648	0.00633162	0.196164	0.0722266
chr2	27592485	27592584	718028	0	+	0.515152	(0.476,0.515]	chr2	83352	84	INTRON	INTRON	ZNF512	ENSG00000243943.10	ENST00000413371.6:ENST00000416005.6:ENST00000556601.5:ENST00000379717.5:ENST00000355467.6:ENST00000494548.1:ENST00000461705.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	41	2	1.72558	2.368775	3.01197	0.0767648	0.00633162	0.196164	0.0722266
chr21	33529868	33529965	7441265	0	-	0.494845	(0.476,0.515]	chr21	759465	1	SS3_PROX	SS3_PROX:INTRON	GART	ENSG00000159131.17	ENST00000381839.7:ENST00000381831.7:ENST00000424203.5:ENST00000381815.9:ENST00000361093.9:ENST00000366093.6:ENST00000466882.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	41	2	1.72558	2.368775	3.01197	0.0767648	0.00633162	0.196164	0.0722266
chr6	154799196	154799295	3002480	0	+	0.50505	(0.476,0.515]	chr6	280767	37	INTRON	INTRON	SCAF8	ENSG00000213079.10	ENST00000367186.7:ENST00000417268.3:ENST00000367178.8	protein_coding	protein_coding	protein_coding	protein_coding	3	41	2	1.72558	2.368775	3.01197	0.0767648	0.00633162	0.196164	0.0722266
chr1	27458709	27458809	406450	0	-	0.49	(0.476,0.515]	chr1	48986	294	INTRON	INTRON	WASF2	ENSG00000158195.11	ENST00000618852.5:ENST00000536657.1	protein_coding	protein_coding	protein_coding	protein_coding	5	57	2	1.54629	2.36874	3.19119	0.0484352	0.00325748	0.153635	0.0524329
chr12	96387704	96387804	5395158	0	-	0.49	(0.476,0.515]	chr12	514463	525	INTRON	INTRON	CDK17	ENSG00000059758.8	ENST00000261211.8:ENST00000543119.6:ENST00000542666.5:ENST00000551816.5:ENST00000552496.5:ENST00000552262.1	protein_coding	protein_coding	protein_coding	protein_coding	5	57	2	1.54629	2.36874	3.19119	0.0484352	0.00325748	0.153635	0.0524329
chr17	81890188	81890281	6850233	0	-	0.494624	(0.476,0.515]	chr17	678421	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ALYREF	ENSG00000183684.8	ENST00000505490.3:ENST00000512673.1:ENST00000511412.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	57	2	1.54629	2.36874	3.19119	0.0484352	0.00325748	0.153635	0.0524329
chr22	21503659	21503759	7560127	0	-	0.54	(0.515,0.57]	chr22	773318	112	INTRON	INTRON	PI4KAP2	ENSG00000183506.17	ENST00000450651.5:ENST00000467443.5:ENST00000479693.1:ENST00000476537.1:ENST00000491562.5	transcribed_unitary_pseudogene	retained_intron	transcribed_unitary_pseudogene	retained_intron:processed_transcript	7	79	2	2.03368	2.3686	2.70352	0.00803127	9.70997e-4	0.0803474	0.0283239
chr13	113182402	113182499	5651784	0	-	0.402062	(0.378,0.408]	chr13	538577	8	INTRON	INTRON	PCID2	ENSG00000126226.22	ENST00000337344.9:ENST00000622406.4:ENST00000375479.6:ENST00000375477.5:ENST00000246505.9:ENST00000375459.5:ENST00000493650.5:ENST00000375457.2:ENST00000473462.5:ENST00000475433.5:ENST00000480971.5:ENST00000484641.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	59	2	1.89052	2.368575	2.84663	0.0148147	0.0133954	0.106702	0.0946278
chr4	126673572	126673672	2237445	0	-	0.39	(0.378,0.408]	chr4	219023	2081	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	5	59	2	1.89052	2.368575	2.84663	0.0148147	0.0133954	0.106702	0.0946278
chr1	174194237	174194337	257451	0	+	0.51	(0.476,0.515]	chr1	30720	342	INTRON	INTRON	RABGAP1L	ENSG00000152061.24	ENST00000357444.10:ENST00000251507.8:ENST00000681986.1:ENST00000635248.1:ENST00000457696.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	41	2	1.92984	2.3685650000000003	2.80729	0.0466474	0.0126008	0.151522	0.0980703
chr2	38748257	38748330	1099847	0	-	0.561644	(0.515,0.57]	chr2	117996	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SRSF7	ENSG00000115875.19	ENST00000446327.6:ENST00000313117.11:ENST00000425778.5:ENST00000425941.6:ENST00000452806.5:ENST00000409276.5:ENST00000432873.5:ENST00000431066.5:ENST00000443213.5:ENST00000487773.1:ENST00000415527.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	64	2	2.03361	2.3685650000000003	2.70352	0.0325854	9.70997e-4	0.145164	0.0283239
chr2	70282880	70282980	1152498	0	-	0.49	(0.476,0.515]	chr2	123121	8	INTRON	INTRON	SNRPG	ENSG00000143977.14	ENST00000272348.7:ENST00000429728.1:ENST00000482975.6:ENST00000438261.5:ENST00000454893.1:ENST00000413456.6:ENST00000449935.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	41	2	1.92984	2.3685650000000003	2.80729	0.0466474	0.0126008	0.151522	0.0980703
chr7	92245084	92245182	3570161	0	-	0.438776	(0.408,0.44]	chr7	332585	31	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ENSG00000289027:KRIT1	ENSG00000289027.1:ENSG00000001631.17	ENST00000692281.1:ENST00000394507.5:ENST00000692807.1:ENST00000340022.6:ENST00000394505.7:ENST00000458177.7:ENST00000684808.1:ENST00000444960.6:ENST00000691239.1:ENST00000686094.1:ENST00000686527.1:ENST00000690529.1:ENST00000689411.1:ENST00000688665.1:ENST00000692157.1:ENST00000686043.1:ENST00000690720.1:ENST00000692690.1:ENST00000690908.1:ENST00000691827.1:ENST00000690751.1:ENST00000425073.2:ENST00000687876.1:ENST00000690904.1:ENST00000688781.1:ENST00000686785.1:ENST00000689556.1:ENST00000688314.1:ENST00000688404.1:ENST00000690292.1:ENST00000687135.1:ENST00000454017.6:ENST00000692361.1:ENST00000689778.1:ENST00000686619.1:ENST00000688766.1:ENST00000685431.1:ENST00000689539.1:ENST00000412043.6:ENST00000394503.6:ENST00000433016.6:ENST00000445516.2:ENST00000686233.1:ENST00000692205.1:ENST00000687627.1:ENST00000688196.1:ENST00000692000.1:ENST00000692428.1:ENST00000685285.1:ENST00000691622.1:ENST00000430102.6:ENST00000440209.5:ENST00000691222.1:ENST00000687517.1:ENST00000422347.6:ENST00000689789.1:ENST00000489087.2:ENST00000691890.1:ENST00000413688.6:ENST00000425919.6:ENST00000452773.6:ENST00000466166.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	120	2	2.08953	2.36856	2.64759	0.00179089	0.0016061	0.0392762	0.0364977
chr22	20536118	20536217	7479636	0	+	0.606061	(0.57,1]	chr22	762964	114	INTRON	INTRON	MED15	ENSG00000099917.17	ENST00000445987.5:ENST00000444094.5:ENST00000414658.5:ENST00000486656.5:ENST00000433831.5:ENST00000432052.5:ENST00000292733.11:ENST00000263205.11:ENST00000477824.5:ENST00000406969.5:ENST00000382974.6:ENST00000441501.5:ENST00000438962.1:ENST00000445189.5:ENST00000451058.5:ENST00000473028.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	49	2	1.87901	2.368515	2.85802	0.0152867	3.01883e-4	0.108569	0.0160895
chrX	301100	301198	7605469	0	+	0.561224	(0.515,0.57]	chrX	779420	19	UTR3	UTR3:EXON_MRNA	PLCXD1	ENSG00000182378.15	ENST00000399012.6:ENST00000381657.8	protein_coding	protein_coding	protein_coding	protein_coding	12	117	2	1.44512	2.36837	3.29162	0.0193997	3.90524e-5	0.119831	0.00533644
chr12	50406709	50406809	5136391	0	+	0.46	(0.44,0.476]	chr12	484352	35	INTRON	INTRON	LARP4	ENSG00000161813.23	ENST00000550522.5:ENST00000293618.12:ENST00000429001.7:ENST00000398473.7:ENST00000548174.5:ENST00000548697.5:ENST00000548993.5:ENST00000522085.5:ENST00000518444.5:ENST00000551886.5:ENST00000523389.5:ENST00000518561.5:ENST00000347328.9:ENST00000550260.1:ENST00000517559.5:ENST00000552445.1	protein_coding	protein_coding	protein_coding	protein_coding	4	55	2	2.13779	2.368335	2.59888	0.0264596	0.00487719	0.122506	0.0640618
chr6	75614866	75614966	2905072	0	+	0.47	(0.44,0.476]	chr6	274477	119	INTRON	INTRON	SENP6	ENSG00000112701.18	ENST00000370010.6:ENST00000447266.7:ENST00000327284.12:ENST00000493959.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	55	2	2.13779	2.368335	2.59888	0.0264596	0.00487719	0.122506	0.0640618
chr11	86013285	86013384	5014276	0	-	0.393939	(0.378,0.408]	chr11	472988	5	INTRON	INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000630913.2:ENST00000528398.5:ENST00000356360.9:ENST00000534412.5:ENST00000531771.5:ENST00000531558.1:ENST00000531930.5:ENST00000532041.5:ENST00000525162.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	35	388	2	1.924	2.3682600000000003	2.81252	3.40283e-4	4.04636e-5	0.016442	0.00539487
chr17	30752706	30752805	6590015	0	+	0.454545	(0.44,0.476]	chr17	640860	90	INTRON	INTRON	SUZ12P1	ENSG00000264538.7	ENST00000578070.5:ENST00000579526.5:ENST00000690405.1:ENST00000497969.6:ENST00000578195.6:ENST00000582557.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	4	55	2	2.29126	2.3682	2.44514	0.0165638	0.0087381	0.102621	0.0845538
chr9	131410729	131410828	4217136	0	+	0.393939	(0.378,0.408]	chr9	386720	161	INTRON	INTRON	PRRC2B	ENSG00000288701.1	ENST00000682525.1:ENST00000684596.1:ENST00000683519.1:ENST00000682501.1	protein_coding	protein_coding	protein_coding	protein_coding	4	54	2	1.94906	2.368055	2.78705	0.023282	0.0135539	0.118176	0.101363
chr1	39004150	39004245	74532	0	+	0.378947	(0.378,0.408]	chr1	9650	2	UTR3	UTR3:EXON_MRNA	AKIRIN1	ENSG00000174574.16	ENST00000432648.8:ENST00000372984.8:ENST00000446189.6:ENST00000531822.1	protein_coding	protein_coding	protein_coding	protein_coding	6	67	2	1.88928	2.3679550000000003	2.84663	0.0133954	0.00958693	0.0946278	0.0866052
chr16	29526768	29526868	6470833	0	-	0.31	(0.28,0.32]	chr16	625147	209	INTRON	INTRON	ENSG00000288632	ENSG00000288632.1	ENST00000675579.1	lncRNA	lncRNA	lncRNA	lncRNA	11	175	2	2.23717	2.36791	2.49865	0.00216019	0.00117311	0.0417866	0.0316446
chr6	85622181	85622281	3151237	0	-	0.47	(0.44,0.476]	chr6	293878	3	SS5_PROX	SS5_PROX:INTRON	ENSG00000271793:SYNCRIP	ENSG00000271793.2:ENSG00000135316.19	ENST00000682083.1:ENST00000683074.1:ENST00000681965.1:ENST00000682504.1:ENST00000682106.1:ENST00000683364.1:ENST00000683436.1:ENST00000684220.1:ENST00000683909.1:ENST00000684462.1:ENST00000616122.5:ENST00000678528.1:ENST00000676637.1:ENST00000677771.1:ENST00000355238.11:ENST00000678878.1:ENST00000677481.1:ENST00000677646.1:ENST00000676630.1:ENST00000678618.1:ENST00000676542.1:ENST00000677059.1:ENST00000444272.2:ENST00000678899.1:ENST00000369622.8:ENST00000678355.1:ENST00000676688.1:ENST00000677514.1:ENST00000678816.1:ENST00000678930.1:ENST00000678589.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	91	2	1.96975	2.36789	2.76603	0.0123514	6.78182e-4	0.0914865	0.0236375
chr15	28241143	28241242	6123228	0	-	0.323232	(0.32,0.35]	chr15	583285	20	INTRON	INTRON	HERC2	ENSG00000128731.18	ENST00000261609.13	protein_coding	protein_coding	protein_coding	protein_coding	4	58	2	1.60297	2.36787	3.13277	0.0647328	0.00458313	0.179192	0.0622676
chr1	227257929	227258028	651114	0	-	0.434343	(0.408,0.44]	chr1	77108	34	INTRON	INTRON	CDC42BPA	ENSG00000143776.20	ENST00000366766.8:ENST00000366769.7:ENST00000334218.9:ENST00000366767.7:ENST00000366764.8:ENST00000478573.6:ENST00000682551.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	31	2	2.2957	2.3677900000000003	2.43988	0.0516458	0.0398236	0.176696	0.143072
chr16	87736531	87736631	6538375	0	-	0.42	(0.408,0.44]	chr16	633530	55	INTRON	INTRON	KLHDC4	ENSG00000104731.14	ENST00000567298.5:ENST00000270583.10:ENST00000347925.9:ENST00000353170.9:ENST00000316853.10:ENST00000566349.5:ENST00000562155.5:ENST00000622456.4:ENST00000562261.1:ENST00000566661.5:ENST00000567513.1:ENST00000564484.5:ENST00000565328.5:ENST00000569747.5:ENST00000564396.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	31	2	2.2957	2.3677900000000003	2.43988	0.0516458	0.0398236	0.176696	0.143072
chr17	81616276	81616376	6849400	0	-	0.42	(0.408,0.44]	chr17	678231	20	INTRON	INTRON	NPLOC4	ENSG00000182446.14	ENST00000331134.11:ENST00000374747.9:ENST00000574897.5:ENST00000625705.1:ENST00000570300.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	31	2	2.2957	2.3677900000000003	2.43988	0.0516458	0.0398236	0.176696	0.143072
chr2	235509336	235509436	1041488	0	+	0.44	(0.408,0.44]	chr2	111217	141	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	31	2	2.2957	2.3677900000000003	2.43988	0.0516458	0.0398236	0.176696	0.143072
chr3	196752947	196753047	1595624	0	+	0.44	(0.408,0.44]	chr3	165300	124	INTRON	INTRON	PAK2	ENSG00000180370.10	ENST00000327134.7	protein_coding	protein_coding	protein_coding	protein_coding	2	31	2	2.2957	2.3677900000000003	2.43988	0.0516458	0.0398236	0.176696	0.143072
chr7	110850199	110850299	3616979	0	-	0.42	(0.408,0.44]	chr7	337078	1245	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000487733.5:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	31	2	2.2957	2.3677900000000003	2.43988	0.0516458	0.0398236	0.176696	0.143072
chr8	47307511	47307611	3747691	0	+	0.42	(0.408,0.44]	chr8	348794	131	INTRON	INTRON	SPIDR	ENSG00000164808.17	ENST00000541342.2:ENST00000523814.5:ENST00000518074.5:ENST00000522900.5:ENST00000297423.9:ENST00000521550.5:ENST00000517824.5:ENST00000524126.5:ENST00000524141.5:ENST00000519661.5:ENST00000522222.5:ENST00000522117.5:ENST00000524033.5:ENST00000524006.5:ENST00000521214.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	31	2	2.2957	2.3677900000000003	2.43988	0.0516458	0.0398236	0.176696	0.143072
chr11	3396288	3396388	4722994	0	+	0.4	(0.378,0.408]	chr11	436997	4	SS5_PROX	SS5_PROX:INTRON	TSSC2	ENSG00000223756.8	ENST00000685598.1:ENST00000691197.1:ENST00000533775.6:ENST00000690471.1:ENST00000529482.5:ENST00000693396.1:ENST00000685130.1:ENST00000526284.5:ENST00000526488.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	13	175	2	2.17649	2.36779	2.55909	0.00117925	3.75028e-4	0.031662	0.0179592
chr12	123462458	123462556	5242886	0	+	0.44898	(0.44,0.476]	chr12	498236	22	INTRON	INTRON	SNRNP35	ENSG00000184209.15	ENST00000527158.2:ENST00000529201.1:ENST00000526639.3:ENST00000412157.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	49	2	1.87325	2.3677799999999998	2.86231	0.0265709	0.012214	0.134088	0.0910127
chr10	124412600	124412700	4710776	0	-	0.44	(0.408,0.44]	chr10	434735	4	SS3_PROX	SS3_PROX:INTRON	OAT	ENSG00000065154.12	ENST00000539214.5:ENST00000368845.6:ENST00000476917.5:ENST00000490096.5:ENST00000492376.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	82	2	1.87977	2.3677449999999998	2.85572	0.0282738	4.26582e-4	0.125825	0.0184578
chr1	45610360	45610456	93475	0	+	0.447917	(0.44,0.476]	chr1	12613	12	EXON_LNCRNA	EXON_LNCRNA:INTRON	NASP	ENSG00000132780.17	ENST00000437901.6:ENST00000537798.5:ENST00000437362.6:ENST00000350030.8:ENST00000527359.5:ENST00000453748.5:ENST00000525515.5:ENST00000528238.5:ENST00000372052.8:ENST00000351223.7:ENST00000530073.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	49	2	1.81595	2.367725	2.9195	0.0317953	0.0102021	0.14477	0.0850389
chr1	38994984	38995083	74435	0	+	0.474747	(0.44,0.476]	chr1	9628	30	INTRON	INTRON	AKIRIN1	ENSG00000174574.16	ENST00000432648.8:ENST00000372984.8:ENST00000446189.6:ENST00000531822.1	protein_coding	protein_coding	protein_coding	protein_coding	7	92	2	2.23425	2.3676500000000003	2.50105	0.00441123	0.00240161	0.0587529	0.0452061
chr19	32583399	32583495	7049622	0	+	0.4375	(0.408,0.44]	chr19	702935	8	INTRON	INTRON	PDCD5	ENSG00000105185.12	ENST00000590247.7:ENST00000419343.7:ENST00000221784.8:ENST00000592786.5:ENST00000379316.3:ENST00000586035.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	127	2	2.25678	2.367635	2.47849	0.00155132	0.00112108	0.0358745	0.030774
chr7	87845653	87845753	3566061	0	-	0.36	(0.35,0.378]	chr7	332292	14	INTRON	INTRON	SLC25A40	ENSG00000075303.13	ENST00000341119.10:ENST00000429674.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	61	2	2.2877	2.3676	2.4475	0.0155765	0.0106974	0.109411	0.0862205
chr1	8778815	8778914	373396	0	-	0.343434	(0.32,0.35]	chr1	43549	251	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000656437.1:ENST00000659924.1	protein_coding	protein_coding	protein_coding	protein_coding	7	99	2	1.787	2.3675699999999997	2.94814	0.0151818	0.00182605	0.108535	0.0386492
chr7	135973528	135973628	3649434	0	-	0.36	(0.35,0.378]	chr7	339214	215	INTRON	INTRON	MTPN	ENSG00000105887.11	ENST00000393085.4:ENST00000435723.1	protein_coding	protein_coding	protein_coding	protein_coding	4	54	2	1.65083	2.3675699999999997	3.08431	0.0521072	0.0065853	0.177022	0.0701901
chrX	110194677	110194776	7861707	0	-	0.363636	(0.35,0.378]	chrX	801459	6	UTR3	UTR3:EXON_MRNA	AMMECR1	ENSG00000101935.12	ENST00000686065.1:ENST00000262844.10	protein_coding	protein_coding	protein_coding	protein_coding	4	54	2	1.65083	2.3675699999999997	3.08431	0.0521072	0.0065853	0.177022	0.0701901
chr6	17641642	17641740	3065546	0	-	0.520408	(0.515,0.57]	chr6	284800	12	INTRON	INTRON	NUP153	ENSG00000124789.12	ENST00000613258.4:ENST00000537253.5:ENST00000262077.3	protein_coding	protein_coding	protein_coding	protein_coding	8	87	2	1.72014	2.36756	3.01498	0.0185015	1.49781e-4	0.108861	0.0106137
chr3	37273235	37273335	1396054	0	+	0.38	(0.378,0.408]	chr3	146326	3	SS3_PROX	SS3_PROX:INTRON	GOLGA4	ENSG00000144674.17	ENST00000435830.6:ENST00000444882.5:ENST00000356847.8:ENST00000450863.6:ENST00000361924.7:ENST00000429018.5:ENST00000431105.1:ENST00000419177.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	51	2	1.94559	2.367525	2.78946	0.0211434	0.0158859	0.122929	0.101453
chr9	131417814	131417913	4217207	0	+	0.494949	(0.476,0.515]	chr9	386720	232	INTRON	INTRON	PRRC2B	ENSG00000288701.1	ENST00000682525.1:ENST00000684596.1:ENST00000683519.1:ENST00000682501.1	protein_coding	protein_coding	protein_coding	protein_coding	7	91	2	2.14389	2.367485	2.59108	0.00540862	0.00196853	0.066545000000000007	0.0402283
chr1	50769531	50769631	450345	0	-	0.41	(0.408,0.44]	chr1	54249	244	INTRON	INTRON	FAF1	ENSG00000185104.21	ENST00000396153.7:ENST00000487898.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	63	2	1.62843	2.36742	3.10641	0.025242	0.00555646	0.133676	0.0648867
chr5	79612523	79612615	2398723	0	+	0.576087	(0.57,1]	chr5	231668	2	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TENT2	ENSG00000164329.14	ENST00000505571.5:ENST00000423041.6:ENST00000504233.5:ENST00000453514.6:ENST00000428308.6:ENST00000515807.5:ENST00000502269.1:ENST00000296783.7:ENST00000514095.5:ENST00000508620.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	17	101	2	2.00809	2.36742	2.72675	4.80104e-4	8.47159e-5	0.019887	0.00823834
chr12	46224368	46224468	5316074	0	-	0.34	(0.32,0.35]	chr12	505718	149	INTRON	INTRON	SLC38A1	ENSG00000111371.16	ENST00000398637.10:ENST00000439706.5:ENST00000549049.5:ENST00000546893.5:ENST00000552197.5:ENST00000612161.4:ENST00000549633.5:ENST00000551506.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	48	2	1.88909	2.36739	2.84569	0.0553737	0.0121137	0.165463	0.0962599
chr7	141746337	141746431	3440182	0	+	0.478723	(0.476,0.515]	chr7	320694	9	EXON_MRNA	EXON_MRNA:INTRON	SSBP1	ENSG00000106028.11	ENST00000612337.4:ENST00000265304.11:ENST00000498107.5:ENST00000489378.5:ENST00000469123.5:ENST00000467681.5:ENST00000465582.5:ENST00000465167.1:ENST00000484178.5:ENST00000481508.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	21	239	2	2.02297	2.367315	2.71166	4.81314e-4	1.35064e-4	0.0199261	0.010622
chr5	36183268	36183363	2338286	0	+	0.536842	(0.515,0.57]	chr5	225920	14	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	SKP2	ENSG00000145604.17	ENST00000274254.9:ENST00000677537.1:ENST00000678260.1:ENST00000513151.6:ENST00000546211.6:ENST00000620197.5:ENST00000678270.1:ENST00000677911.1:ENST00000677984.1:ENST00000676559.1:ENST00000678537.1:ENST00000274255.11:ENST00000678580.1:ENST00000678149.1:ENST00000504386.1:ENST00000677905.1:ENST00000677886.1:ENST00000678129.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	35	357	2	2.03824	2.3672500000000003	2.69626	2.19906e-4	5.91034e-6	0.0135522	0.00170648
chr7	150274452	150274552	3673159	0	-	0.44	(0.408,0.44]	chr7	340876	250	INTRON	INTRON	ACTR3C	ENSG00000106526.11	ENST00000478393.5:ENST00000683684.1:ENST00000252071.8	protein_coding	protein_coding	protein_coding	protein_coding	6	63	2	1.40381	2.36724	3.33067	0.0521927	0.0024459	0.177259	0.0445752
chr11	57499252	57499352	4953633	0	-	0.52	(0.515,0.57]	chr11	465037	3	SS5_PROX	SS5_PROX:INTRON	SLC43A1	ENSG00000149150.9	ENST00000278426.8:ENST00000528450.5:ENST00000525764.5:ENST00000533515.5:ENST00000530159.5:ENST00000533066.5:ENST00000524995.5:ENST00000534105.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	15	161	2	2.1346	2.367215	2.59983	0.00108683	7.65398e-5	0.0303873	0.00735438
chr7	12403358	12403458	3485436	0	-	0.45	(0.44,0.476]	chr7	325971	3	SS5_PROX	SS5_PROX:INTRON	VWDE	ENSG00000146530.15	ENST00000275358.8:ENST00000452576.6:ENST00000521169.5:ENST00000326715.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	116	2	2.17708	2.36721	2.55734	0.00336887	7.72402e-4	0.0516668	0.0255867
chr1	235316219	235316319	663743	0	-	0.56	(0.515,0.57]	chr1	78552	551	INTRON	INTRON	ARID4B	ENSG00000054267.22	ENST00000349213.7:ENST00000366603.6:ENST00000264183.9:ENST00000421364.5:ENST00000491632.5:ENST00000418304.1:ENST00000466653.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	36	2	2.34087	2.36719	2.39351	0.0469761	0.0100431	0.151917	0.0881096
chr11	68496260	68496359	4817688	0	+	0.535354	(0.515,0.57]	chr11	448907	351	INTRON	INTRON	PPP6R3	ENSG00000110075.15	ENST00000530427.5:ENST00000528635.5:ENST00000529907.5:ENST00000533127.5:ENST00000534534.5:ENST00000529344.5:ENST00000524845.5:ENST00000393800.7:ENST00000265637.8:ENST00000524904.5:ENST00000393801.7:ENST00000265636.9:ENST00000529710.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	36	2	2.34087	2.36719	2.39351	0.0469761	0.0100431	0.151917	0.0881096
chr9	15500283	15500383	4235976	0	-	0.52	(0.515,0.57]	chr9	389324	77	INTRON	INTRON	PSIP1	ENSG00000164985.15	ENST00000380738.8:ENST00000380733.9:ENST00000380716.8:ENST00000380715.5:ENST00000397519.6:ENST00000487363.5:ENST00000463712.6:ENST00000488797.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	36	2	2.34087	2.36719	2.39351	0.0469761	0.0100431	0.151917	0.0881096
chr13	19717675	19717775	5552287	0	-	0.43	(0.408,0.44]	chr13	530696	77	INTRON	INTRON	PSPC1	ENSG00000121390.19	ENST00000471658.5:ENST00000492741.5:ENST00000635562.1:ENST00000338910.9:ENST00000619300.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	13	156	2	2.19046	2.367155	2.54385	0.00114553	5.58026e-4	0.0308287	0.0215191
chr10	31907271	31907371	4590105	0	-	0.34	(0.32,0.35]	chr10	423163	453	INTRON	INTRON	ARHGAP12	ENSG00000165322.18	ENST00000344936.7:ENST00000375245.8:ENST00000396144.8:ENST00000375250.9:ENST00000311380.8	protein_coding	protein_coding	protein_coding	protein_coding	7	112	2	2.04237	2.3670850000000003	2.6918	0.0375542	2.30431e-4	0.140222	0.0133928
chr5	111502088	111502188	2702696	0	-	0.31	(0.28,0.32]	chr5	254403	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	STARD4	ENSG00000164211.13	ENST00000296632.8:ENST00000512160.5:ENST00000511137.5:ENST00000502931.5:ENST00000505803.5:ENST00000502322.5:ENST00000509887.5:ENST00000511569.5:ENST00000511436.5:ENST00000510346.5:ENST00000455172.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	52	2	1.81582	2.36707	2.91832	0.068122	0.0102484	0.184298	0.089002
chr14	102612318	102612418	5822730	0	+	0.53	(0.515,0.57]	chr14	552490	186	INTRON	INTRON	RCOR1	ENSG00000089902.10	ENST00000262241.7	protein_coding	protein_coding	protein_coding	protein_coding	14	127	2	1.47855	2.36694	3.25533	0.0138756	3.44919e-5	0.0954466	0.00467863
chr9	131201917	131202017	4216421	0	+	0.43	(0.408,0.44]	chr9	386672	2	SS5_PROX	SS5_PROX:INTRON	NUP214	ENSG00000126883.19	ENST00000695497.1:ENST00000695498.1:ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000524578.6:ENST00000453861.6:ENST00000483497.6:ENST00000695500.1:ENST00000650694.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	28	338	2	1.8136	2.366935	2.92027	0.00186992	3.25634e-6	0.0390476	0.00117492
chr2	45570911	45571011	1112952	0	-	0.38	(0.378,0.408]	chr2	119331	30	INTRON	INTRON	SRBD1	ENSG00000068784.13	ENST00000263736.5	protein_coding	protein_coding	protein_coding	protein_coding	3	43	2	1.94681	2.36693	2.78705	0.0457723	0.0135539	0.149888	0.101363
chr6	109102170	109102269	2935460	0	+	0.393939	(0.378,0.408]	chr6	276349	15	INTRON	INTRON	CEP57L1	ENSG00000183137.15	ENST00000521277.5:ENST00000521737.5:ENST00000407272.5:ENST00000519286.5:ENST00000518329.5:ENST00000522461.5:ENST00000518853.5:ENST00000521522.5:ENST00000524064.5:ENST00000522608.5:ENST00000517392.6:ENST00000519407.5:ENST00000521503.5:ENST00000519095.5:ENST00000520610.5:ENST00000368968.6:ENST00000522490.5:ENST00000523209.5:ENST00000368970.6:ENST00000520883.5:ENST00000520761.1:ENST00000523787.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	43	2	1.94681	2.36693	2.78705	0.0457723	0.0135539	0.149888	0.101363
chr6	147263441	147263540	2989302	0	+	0.40404	(0.378,0.408]	chr6	280025	7	INTRON	INTRON	STXBP5	ENSG00000164506.15	ENST00000321680.11:ENST00000367481.7:ENST00000546097.5:ENST00000367480.7	protein_coding	protein_coding	protein_coding	protein_coding	3	43	2	1.94681	2.36693	2.78705	0.0457723	0.0135539	0.149888	0.101363
chr14	54717405	54717505	5898402	0	-	0.34	(0.32,0.35]	chr14	560196	296	INTRON	INTRON	ENSG00000285774	ENSG00000285774.4	ENST00000691091.1	lncRNA	lncRNA	lncRNA	lncRNA	3	48	2	2.35591	2.366925	2.37794	0.0498601	0.0128129	0.156383	0.0990564
chr10	49949349	49949448	4432699	0	+	0.242424	[0,0.28]	chr10	408674	39	INTRON	INTRON	TIMM23B:TIMM23B-AGAP6	ENSG00000204152.14:ENSG00000178440.8	ENST00000478381.5:ENST00000651259.3:ENST00000651763.1:ENST00000651208.1:ENST00000652716.1:ENST00000483296.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	44	2	2.29142	2.36692	2.44242	0.0592143	0.0491024	0.189982	0.155269
chr17	30852161	30852261	6590631	0	+	0.27	[0,0.28]	chr17	640948	69	INTRON	INTRON	ATAD5	ENSG00000176208.9	ENST00000321990.5:ENST00000578295.5:ENST00000585133.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:non_stop_decay	2	44	2	2.29142	2.36692	2.44242	0.0592143	0.0491024	0.189982	0.155269
chr7	111401407	111401507	3622500	0	-	0.24	[0,0.28]	chr7	337108	86	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000452895.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding	2	44	2	2.29142	2.36692	2.44242	0.0592143	0.0491024	0.189982	0.155269
chr2	174368629	174368729	1271074	0	-	0.41	(0.408,0.44]	chr2	134338	97	INTRON	INTRON	CIR1	ENSG00000138433.16	ENST00000342016.8:ENST00000377973.4	protein_coding	protein_coding	protein_coding	protein_coding	5	67	2	2.26792	2.366895	2.46587	0.0179973	0.00280622	0.106756	0.0488779
chr2	27597366	27597466	718077	0	+	0.43	(0.408,0.44]	chr2	83352	133	INTRON	INTRON	ZNF512	ENSG00000243943.10	ENST00000413371.6:ENST00000416005.6:ENST00000556601.5:ENST00000379717.5:ENST00000355467.6:ENST00000494548.1:ENST00000461705.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	67	2	1.78881	2.36681	2.94481	0.0370259	0.00110214	0.139194	0.03038
chr7	152407643	152407743	3681010	0	-	0.36	(0.35,0.378]	chr7	341660	486	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000682301.1:ENST00000452749.2:ENST00000680867.1:ENST00000683800.1:ENST00000684278.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	112	2	1.97729	2.3668	2.75631	0.00688871	0.00113582	0.0750118	0.0307499
chr2	20288957	20289057	1076153	0	-	0.46	(0.44,0.476]	chr2	114976	51	INTRON	INTRON	PUM2	ENSG00000055917.16	ENST00000338086.9:ENST00000361078.7:ENST00000440577.5	protein_coding	protein_coding	protein_coding	protein_coding	3	41	2	1.93084	2.3667949999999998	2.80275	0.0443175	0.0146513	0.162302	0.0982604
chr8	132809265	132809364	3865520	0	+	0.444444	(0.44,0.476]	chr8	355851	16	EXON_MRNA	EXON_MRNA:INTRON	PHF20L1	ENSG00000129292.21	ENST00000622263.4:ENST00000220847.8:ENST00000395383.5:ENST00000361997.9:ENST00000395379.5:ENST00000395386.7:ENST00000315808.14:ENST00000337920.8:ENST00000395376.5:ENST00000395390.6:ENST00000486199.5:ENST00000521038.5:ENST00000395374.1:ENST00000469979.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	41	2	1.93084	2.3667949999999998	2.80275	0.0443175	0.0146513	0.162302	0.0982604
chr9	136417781	136417848	4221362	0	+	0.462687	(0.44,0.476]	chr9	387539	2	SS3_PROX	SS3_PROX:INTRON	PMPCA	ENSG00000165688.12	ENST00000371717.8:ENST00000399219.7:ENST00000462616.1:ENST00000444897.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	84	2	1.82106	2.36679	2.91252	0.0124107	0.00164027	0.0973643	0.0369207
chr8	30708737	30708833	3932555	0	-	0.4375	(0.408,0.44]	chr8	360257	2	INTRON	INTRON	GSR	ENSG00000104687.14	ENST00000221130.11:ENST00000643653.1:ENST00000643525.1:ENST00000537535.5:ENST00000541648.5:ENST00000546342.5:ENST00000523295.5:ENST00000521479.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	41	2	2.14732	2.3667800000000003	2.58624	0.0273686	0.0237354	0.129075	0.123904
chr3	196421731	196421831	1899559	0	-	0.4	(0.378,0.408]	chr3	190226	56	INTRON	INTRON	UBXN7	ENSG00000163960.12	ENST00000296328.9:ENST00000429160.1:ENST00000428095.1:ENST00000381887.7:ENST00000493566.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	59	2	1.8252	2.366775	2.90835	0.0619563	0.00133715	0.174514	0.0335955
chr11	2944626	2944724	4891494	0	-	0.581633	(0.57,1]	chr11	458257	3	UTR3	UTR3:EXON_MRNA	NAP1L4	ENSG00000205531.13	ENST00000620138.4:ENST00000380542.9:ENST00000469805.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	65	2	2.24353	2.36677	2.49001	9.12002e-4	8.49418e-4	0.027765	0.0267232
chr6	159728003	159728103	3022393	0	+	0.6	(0.57,1]	chr6	281889	3	SS5_PROX	SS5_PROX:INTRON	WTAP	ENSG00000146457.16	ENST00000358372.8:ENST00000650096.1:ENST00000614346.4:ENST00000621533.5:ENST00000494513.1:ENST00000631126.2:ENST00000337387.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	65	2	2.24353	2.36677	2.49001	9.12002e-4	8.49418e-4	0.027765	0.0267232
chr17	66311921	66312020	6662390	0	+	0.292929	(0.28,0.32]	chr17	650320	54	INTRON	INTRON	PRKCA	ENSG00000154229.12	ENST00000413366.8:ENST00000578063.5:ENST00000583361.1:ENST00000284384.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	85	2	1.76048	2.366735	2.97299	0.0450149	0.00126436	0.149888	0.0329641
chr19	38847015	38847115	7180816	0	-	0.53	(0.515,0.57]	chr19	725892	3	SS5_PROX	SS5_PROX:INTRON	HNRNPL	ENSG00000104824.18	ENST00000221419.10:ENST00000647557.1:ENST00000388749.7:ENST00000601449.5:ENST00000600873.5:ENST00000598985.5:ENST00000601047.5:ENST00000600233.5:ENST00000601813.1:ENST00000600741.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	78	2	2.19642	2.366735	2.53705	0.00442355	0.00186194	0.0588897	0.039946
chr2	20324871	20324970	1076521	0	-	0.222222	[0,0.28]	chr2	115021	59	INTRON	INTRON	PUM2	ENSG00000055917.16	ENST00000338086.9:ENST00000361078.7:ENST00000442400.5:ENST00000420234.5:ENST00000429419.6:ENST00000432105.5:ENST00000446940.5:ENST00000424110.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	75	2	2.34586	2.366715	2.38757	0.0552962	0.00631808	0.165463	0.0722266
chr3	32748731	32748831	1393764	0	+	0.53	(0.515,0.57]	chr3	145926	109	INTRON	INTRON	CNOT10	ENSG00000182973.20	ENST00000331889.10:ENST00000328834.10:ENST00000435630.5:ENST00000454516.7:ENST00000416457.5:ENST00000430408.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	37	2	2.27238	2.3667100000000003	2.46104	0.032841	0.0161808	0.145164	0.101453
chr10	75219456	75219556	4464428	0	+	0.44	(0.408,0.44]	chr10	411830	1	SS5_PROX	SS5_PROX:INTRON	VDAC2	ENSG00000165637.14	ENST00000543351.5:ENST00000298468.9:ENST00000344036.8:ENST00000472137.5:ENST00000332211.11:ENST00000475142.5:ENST00000481876.5:ENST00000313132.8:ENST00000498394.5:ENST00000468285.1:ENST00000447677.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	41	2	2.07919	2.366695	2.6542	0.0291499	0.0227514	0.14147	0.117618
chr17	38895301	38895401	6606660	0	+	0.42	(0.408,0.44]	chr17	643201	44	INTRON	INTRON	LASP1	ENSG00000002834.18	ENST00000433206.6:ENST00000585841.5:ENST00000318008.11:ENST00000443937.7:ENST00000584106.1:ENST00000435347.7:ENST00000419929.1:ENST00000581485.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	41	2	2.07919	2.366695	2.6542	0.0291499	0.0227514	0.14147	0.117618
chr19	17408796	17408896	7030114	0	+	0.43	(0.408,0.44]	chr19	700047	21	INTRON	INTRON	BISPR:MVB12A	ENSG00000282851.2:ENSG00000141971.13	ENST00000646744.1:ENST00000635536.2:ENST00000635060.2:ENST00000634291.2:ENST00000528911.5:ENST00000645298.1:ENST00000528604.5:ENST00000635572.1:ENST00000634675.1:ENST00000634813.1:ENST00000647283.1:ENST00000635435.2:ENST00000634731.2:ENST00000645062.1:ENST00000635176.2:ENST00000645376.1:ENST00000634577.1:ENST00000634942.2:ENST00000529490.5:ENST00000634568.1:ENST00000600514.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA:processed_transcript	3	41	2	2.07919	2.366695	2.6542	0.0291499	0.0227514	0.14147	0.117618
chr6	43044451	43044551	3095815	0	-	0.44	(0.408,0.44]	chr6	289720	3	SS5_PROX	SS5_PROX:INTRON	CUL7	ENSG00000044090.13	ENST00000265348.9:ENST00000690231.1:ENST00000685042.1:ENST00000689256.1:ENST00000674112.2:ENST00000674134.1:ENST00000478630.2:ENST00000674100.1:ENST00000686442.1:ENST00000688302.1:ENST00000673725.1:ENST00000673753.1:ENST00000687225.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	41	2	2.07919	2.366695	2.6542	0.0291499	0.0227514	0.14147	0.117618
chr7	133047883	133047983	3645547	0	-	0.47	(0.44,0.476]	chr7	338876	115	INTRON	INTRON	CHCHD3	ENSG00000106554.13	ENST00000262570.10:ENST00000448878.6:ENST00000496427.5:ENST00000423635.5:ENST00000481152.2:ENST00000457942.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	85	2	1.7899	2.366555	2.94321	0.0158205	0.00111162	0.101453	0.0305384
chr17	49790165	49790265	6625326	0	+	0.47	(0.44,0.476]	chr17	646712	2	SS5_PROX	SS5_PROX:INTRON	KAT7	ENSG00000136504.13	ENST00000675278.1:ENST00000259021.9:ENST00000454930.6:ENST00000509773.5:ENST00000510819.5:ENST00000424009.6:ENST00000509124.5:ENST00000506533.5:ENST00000435742.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	43	2	2.24189	2.366505	2.49112	0.0315968	0.0193405	0.144381	0.108861
chr11	31502082	31502181	4939166	0	-	0.292929	(0.28,0.32]	chr11	462601	135	INTRON	INTRON	IMMP1L	ENSG00000148950.11	ENST00000532287.6:ENST00000534812.5:ENST00000526776.5:ENST00000278200.5:ENST00000648582.1:ENST00000533642.1:ENST00000527184.5:ENST00000528161.5:ENST00000532624.5:ENST00000529749.5:ENST00000530023.5:ENST00000531693.1:ENST00000532668.1:ENST00000533921.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	53	2	2.2609	2.3665000000000003	2.4721	0.0671429	0.00906617	0.183051	0.0854289
chr5	151776542	151776637	2521839	0	+	0.294737	(0.28,0.32]	chr5	241284	15	INTRON	INTRON	G3BP1	ENSG00000145907.16	ENST00000523519.5:ENST00000520578.6:ENST00000627077.2:ENST00000678976.1:ENST00000677408.1:ENST00000678070.1:ENST00000678964.1:ENST00000678925.1:ENST00000394123.7:ENST00000676978.1:ENST00000679289.1:ENST00000677493.1:ENST00000676644.1:ENST00000677757.1:ENST00000522761.6:ENST00000677909.1:ENST00000676827.1:ENST00000520177.6:ENST00000676634.1:ENST00000678854.1:ENST00000677602.1:ENST00000519832.1:ENST00000518726.5:ENST00000676911.1:ENST00000356245.8:ENST00000678646.1:ENST00000677381.1:ENST00000678904.1:ENST00000678910.1:ENST00000678101.1:ENST00000677105.1:ENST00000676813.1:ENST00000522367.6:ENST00000517947.5:ENST00000507878.7:ENST00000520006.2:ENST00000678369.1:ENST00000677433.1:ENST00000678564.1:ENST00000677252.1:ENST00000677369.1:ENST00000677284.1:ENST00000676894.1:ENST00000677923.1:ENST00000677323.1:ENST00000522666.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	53	2	2.2609	2.3665000000000003	2.4721	0.0671429	0.00906617	0.183051	0.0854289
chr9	3529977	3530077	4092902	0	+	0.37	(0.35,0.378]	chr9	373028	28	INTRON	INTRON	RFX3-DT	ENSG00000232104.4	ENST00000691391.1:ENST00000691026.1:ENST00000423112.2	lncRNA	lncRNA	lncRNA	lncRNA	4	60	2	2.23651	2.36647	2.49643	0.020879	0.00752974	0.111766	0.0773151
chr9	112317170	112317270	4317796	0	-	0.46	(0.44,0.476]	chr9	397079	189	INTRON	INTRON	PTBP3	ENSG00000119314.16	ENST00000334318.10:ENST00000458258.5:ENST00000374257.6:ENST00000374255.6:ENST00000343327.6:ENST00000487997.1:ENST00000210227.4:ENST00000450374.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	76	2	1.88483	2.366415	2.848	0.0149825	0.00215274	0.107704	0.0417866
chr12	6575428	6575526	5259295	0	-	0.336735	(0.32,0.35]	chr12	500680	18	INTRON	INTRON	CHD4	ENSG00000111642.16	ENST00000645022.1:ENST00000544040.7:ENST00000544484.6:ENST00000357008.7:ENST00000647112.1:ENST00000642810.1:ENST00000642637.1:ENST00000647394.1:ENST00000643335.1:ENST00000643815.1:ENST00000647535.1:ENST00000646806.1:ENST00000644137.1:ENST00000642879.1:ENST00000646462.1:ENST00000644652.1:ENST00000645645.1:ENST00000642594.1:ENST00000646360.1:ENST00000646268.1:ENST00000645095.1:ENST00000644352.1:ENST00000645991.1:ENST00000642860.1:ENST00000647483.1:ENST00000646608.1:ENST00000644077.1:ENST00000643538.1:ENST00000645005.1:ENST00000645199.1:ENST00000643367.1:ENST00000646609.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	48	2	1.88468	2.3664	2.84812	0.0515071	0.0147575	0.176696	0.0983813
chr21	10561110	10561191	7369634	0	+	0.345679	(0.32,0.35]	chr21	752109	2	EXON_LNCRNA	EXON_LNCRNA	ENSG00000273840	ENSG00000273840.1	ENST00000612267.1	lncRNA	lncRNA	lncRNA	lncRNA	3	48	2	1.88468	2.3664	2.84812	0.0515071	0.0147575	0.176696	0.0983813
chr4	78805974	78806074	1981681	0	+	0.3	(0.28,0.32]	chr4	198463	289	INTRON	INTRON	BMP2K	ENSG00000138756.19	ENST00000389010.7:ENST00000502613.3:ENST00000502871.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	13	200	2	1.77212	2.3663849999999997	2.96065	0.00629186	2.7488e-4	0.0722266	0.0151875
chr12	122092363	122092463	5239998	0	+	0.46	(0.44,0.476]	chr12	497496	127	INTRON	INTRON	MLXIP	ENSG00000175727.14	ENST00000319080.12	protein_coding	protein_coding	protein_coding	protein_coding	5	66	2	2.1762	2.366345	2.55649	0.0092251	0.00670547	0.0855292	0.0707084
chr22	40818694	40818794	7590374	0	-	0.46	(0.44,0.476]	chr22	777210	1	SS5_PROX	SS5_PROX:INTRON	SLC25A17	ENSG00000100372.15	ENST00000544408.5:ENST00000435456.7:ENST00000491545.5:ENST00000263255.10:ENST00000447566.5:ENST00000420970.5:ENST00000430221.5:ENST00000427084.5:ENST00000458600.5:ENST00000443810.5:ENST00000412879.5:ENST00000426396.5:ENST00000434193.5:ENST00000449676.5:ENST00000434185.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	66	2	2.1762	2.366345	2.55649	0.0092251	0.00670547	0.0855292	0.0707084
chr20	35711619	35711719	7336233	0	-	0.32	(0.28,0.32]	chr20	747422	8	INTRON	INTRON	RBM39	ENSG00000131051.24	ENST00000253363.11:ENST00000639702.1:ENST00000656873.1:ENST00000463004.5:ENST00000361162.10:ENST00000461283.5:ENST00000403542.6:ENST00000338163.10:ENST00000528062.7:ENST00000429968.5:ENST00000444878.5:ENST00000665058.1:ENST00000476806.5:ENST00000495293.5:ENST00000492779.5:ENST00000465158.5:ENST00000448303.5:ENST00000470563.5:ENST00000615771.5:ENST00000471635.5:ENST00000475651.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	15	240	2	2.28297	2.3662400000000003	2.44951	0.00106479	5.1917e-4	0.0299309	0.020443
chr3	152300094	152300193	1535298	0	+	0.353535	(0.35,0.378]	chr3	159987	8	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	MBNL1	ENSG00000152601.18	ENST00000477171.1:ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000461436.1:ENST00000495875.6:ENST00000324210.10:ENST00000493459.5:ENST00000459747.1:ENST00000460591.5:ENST00000466565.1:ENST00000545754.5:ENST00000357472.7:ENST00000324196.9:ENST00000498502.5:ENST00000463374.5:ENST00000485910.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	45	612	2	2.0116	2.366155	2.72071	5.76214e-4	2.46628e-6	0.0222646	9.98429e-4
chr1	47264995	47265094	445603	0	-	0.494949	(0.476,0.515]	chr1	53995	15	INTRON	INTRON	STIL	ENSG00000123473.17	ENST00000360380.7:ENST00000371877.8:ENST00000337817.10:ENST00000682940.1:ENST00000683977.1:ENST00000682977.1:ENST00000396221.6:ENST00000684618.1:ENST00000447475.7:ENST00000418131.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	75	2	2.03337	2.3661149999999997	2.69886	0.00851546	0.00385209	0.0833995	0.0542786
chr17	81692203	81692293	6691101	0	+	0.611111	(0.57,1]	chr17	654068	8	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	HGS	ENSG00000185359.14	ENST00000677161.1:ENST00000678096.1:ENST00000679191.1:ENST00000676546.1:ENST00000678387.1:ENST00000677109.1:ENST00000677484.1:ENST00000678115.1:ENST00000677243.1:ENST00000677044.1:ENST00000679336.1:ENST00000678196.1:ENST00000676462.1:ENST00000678105.1:ENST00000676478.1:ENST00000329138.9:ENST00000677225.1:ENST00000678866.1:ENST00000679275.1:ENST00000678541.1:ENST00000676729.1:ENST00000572392.2:ENST00000678846.1:ENST00000678658.1:ENST00000678893.1:ENST00000677818.1:ENST00000678313.1:ENST00000573080.1:ENST00000679168.1:ENST00000677463.1:ENST00000677872.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	48	2	1.8633	2.36611	2.86892	0.0066826	0.00125753	0.0738715	0.0323608
chr13	28238856	28238956	5461837	0	+	0.36	(0.35,0.378]	chr13	523267	181	INTRON	INTRON	PAN3	ENSG00000152520.14	ENST00000503791.5:ENST00000380958.8:ENST00000399613.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	33	2	2.1617	2.366095	2.57049	0.0771502	0.0262669	0.196285	0.133676
chr17	75361192	75361292	6837353	0	-	0.36	(0.35,0.378]	chr17	675716	280	INTRON	INTRON	GRB2	ENSG00000177885.15	ENST00000316615.9:ENST00000316804.10:ENST00000392562.5:ENST00000392564.5:ENST00000392563.5:ENST00000648046.1:ENST00000578961.5:ENST00000582582.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	33	2	2.1617	2.366095	2.57049	0.0771502	0.0262669	0.196285	0.133676
chr21	37513426	37513525	7407713	0	+	0.373737	(0.35,0.378]	chr21	754961	10	UTR3	UTR3:EXON_MRNA	DYRK1A	ENSG00000157540.22	ENST00000647188.2:ENST00000647504.1:ENST00000338785.8:ENST00000646548.1	protein_coding	protein_coding	protein_coding	protein_coding	2	33	2	2.1617	2.366095	2.57049	0.0771502	0.0262669	0.196285	0.133676
chr21	44059694	44059788	7415512	0	+	0.351064	(0.35,0.378]	chr21	755815	3	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	TRAPPC10	ENSG00000160218.13	ENST00000291574.9:ENST00000380221.7:ENST00000422875.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	33	2	2.1617	2.366095	2.57049	0.0771502	0.0262669	0.196285	0.133676
chr3	129168604	129168701	1815171	0	-	0.360825	(0.35,0.378]	chr3	182469	9	UTR3	UTR3:EXON_MRNA	CNBP	ENSG00000169714.17	ENST00000422453.7	protein_coding	protein_coding	protein_coding	protein_coding	2	33	2	2.1617	2.366095	2.57049	0.0771502	0.0262669	0.196285	0.133676
chr15	44538126	44538225	6015396	0	+	0.40404	(0.378,0.408]	chr15	573008	3	INTRON	INTRON	EIF3J	ENSG00000104131.13	ENST00000424492.7:ENST00000261868.10:ENST00000535391.5	protein_coding	protein_coding	protein_coding	protein_coding	4	59	2	2.17608	2.366075	2.55607	0.0218783	0.00704647	0.123836	0.0718189
chr15	66584046	66584146	6050801	0	+	0.4	(0.378,0.408]	chr15	576221	14	INTRON	INTRON	LINC01169	ENSG00000259471.1	ENST00000558797.1	lncRNA	lncRNA	lncRNA	lncRNA	4	59	2	2.17608	2.366075	2.55607	0.0218783	0.00704647	0.123836	0.0718189
chr3	46943757	46943857	1679700	0	-	0.54	(0.515,0.57]	chr3	171431	23	INTRON	INTRON	CCDC12	ENSG00000160799.12	ENST00000425441.5:ENST00000683445.1:ENST00000292314.6:ENST00000605358.5:ENST00000488069.5:ENST00000603885.5:ENST00000446836.5:ENST00000494655.5:ENST00000604164.5:ENST00000604181.1:ENST00000605875.1:ENST00000460035.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	57	2	1.811	2.366075	2.92115	0.0325989	0.00110258	0.133687	0.03038
chr4	39730331	39730431	1953314	0	+	0.45	(0.44,0.476]	chr4	195630	316	INTRON	INTRON	UBE2K	ENSG00000078140.14	ENST00000510934.5:ENST00000261427.10:ENST00000438068.6:ENST00000513231.5:ENST00000503368.5:ENST00000445950.2:ENST00000510719.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	18	225	2	2.06304	2.366005	2.66897	0.00131329	4.10414e-5	0.0331539	0.00519615
chr16	15050680	15050779	6450029	0	-	0.373737	(0.35,0.378]	chr16	621432	22	INTRON	INTRON	NTAN1	ENSG00000157045.9	ENST00000624579.3:ENST00000622833.4:ENST00000287706.8:ENST00000565187.5:ENST00000568320.5:ENST00000566419.1:ENST00000563940.1:ENST00000567030.5:ENST00000567420.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	33	2	2.24535	2.3659600000000003	2.48657	0.0647516	0.032907	0.179192	0.145164
chr8	17992884	17992982	3708469	0	+	0.357143	(0.35,0.378]	chr8	343984	8	INTRON	INTRON	PCM1	ENSG00000078674.19	ENST00000325083.13:ENST00000519253.5:ENST00000524226.5:ENST00000522275.5	protein_coding	protein_coding	protein_coding	protein_coding	2	33	2	2.24535	2.3659600000000003	2.48657	0.0647516	0.032907	0.179192	0.145164
chr9	19101923	19102023	4236594	0	-	0.37	(0.35,0.378]	chr9	389435	48	INTRON	INTRON	HAUS6	ENSG00000147874.11	ENST00000380502.8	protein_coding	protein_coding	protein_coding	protein_coding	2	33	2	2.24535	2.3659600000000003	2.48657	0.0647516	0.032907	0.179192	0.145164
chrX	71418722	71418822	7678772	0	+	0.37	(0.35,0.378]	chrX	786274	21	INTRON	INTRON	TAF1	ENSG00000147133.17	ENST00000683202.1:ENST00000373790.9:ENST00000423759.6:ENST00000683782.1:ENST00000683668.1:ENST00000276072.9:ENST00000373775.8:ENST00000485087.6:ENST00000437147.8:ENST00000683358.1:ENST00000682124.1:ENST00000461764.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	33	2	2.24535	2.3659600000000003	2.48657	0.0647516	0.032907	0.179192	0.145164
chr11	240269	240368	4718069	0	+	0.515152	(0.476,0.515]	chr11	435646	8	INTRON	INTRON	PSMD13	ENSG00000185627.19	ENST00000529372.5:ENST00000532097.6:ENST00000431206.6:ENST00000534590.5:ENST00000528906.5:ENST00000525665.5:ENST00000527047.5:ENST00000352303.9:ENST00000382671.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	55	2	2.05154	2.365885	2.68023	0.0336015	0.00353671	0.134145	0.0546236
chr5	14676199	14676298	2321003	0	+	0.313131	(0.28,0.32]	chr5	224817	21	INTRON	INTRON	OTULIN	ENSG00000154124.5	ENST00000503023.1:ENST00000284274.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	70	2	2.09794	2.365865	2.63379	0.0340483	0.00503861	0.134863	0.0646039
chr1	151285687	151285784	225602	0	+	0.556701	(0.515,0.57]	chr1	25795	6	UTR5	UTR5:EXON_MRNA:SS3_PROX:INTRON	ZNF687	ENSG00000143373.18	ENST00000443959.1:ENST00000449313.5:ENST00000336715.11:ENST00000324048.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	57	2	2.15866	2.36582	2.57298	0.0100547	0.00506495	0.0848452	0.0646039
chr20	38927823	38927922	7272437	0	+	0.484848	(0.476,0.515]	chr20	739054	5	INTRON	INTRON	FAM83D	ENSG00000101447.15	ENST00000619304.4:ENST00000619850.2	protein_coding	protein_coding	protein_coding	protein_coding	5	67	2	2.24612	2.365815	2.48551	0.00799949	0.00756632	0.0773151	0.0766625
chr5	69172051	69172151	2380028	0	+	0.46	(0.44,0.476]	chr5	229163	2	INTRON	INTRON	CCNB1	ENSG00000134057.15	ENST00000506572.5:ENST00000256442.10:ENST00000508407.5:ENST00000505500.5:ENST00000503507.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	56	2	1.65297	2.365795	3.07862	0.0331814	0.0060153	0.145918	0.0674604
chr2	63968257	63968356	1139496	0	-	0.282828	(0.28,0.32]	chr2	122015	19	INTRON	INTRON	VPS54	ENSG00000143952.20	ENST00000409558.8:ENST00000272322.9:ENST00000354504.7	protein_coding	protein_coding	protein_coding	protein_coding	4	62	2	1.85772	2.36577	2.87382	0.0300199	0.014868	0.142135	0.0989021
chr11	34971479	34971578	4769568	0	+	0.292929	(0.28,0.32]	chr11	441331	8	INTRON	INTRON	PDHX	ENSG00000110435.13	ENST00000448838.8:ENST00000227868.9:ENST00000430469.6	protein_coding	protein_coding	protein_coding	protein_coding	3	52	2	2.33771	2.36559	2.39347	0.0504457	0.0142701	0.156383	0.103838
chr2	177465279	177465379	926823	0	+	0.29	(0.28,0.32]	chr2	101840	4	SS5_PROX	SS5_PROX:INTRON	AGPS	ENSG00000018510.18	ENST00000679459.1:ENST00000637633.2:ENST00000680770.1:ENST00000680705.1:ENST00000681752.1:ENST00000681565.1:ENST00000680893.1:ENST00000681032.1:ENST00000679421.1:ENST00000680910.1:ENST00000409888.1:ENST00000642466.2:ENST00000264167.11:ENST00000680155.1:ENST00000679478.1:ENST00000681449.1:ENST00000681891.1:ENST00000681028.1:ENST00000680028.1:ENST00000679994.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	52	2	2.33771	2.36559	2.39347	0.0504457	0.0142701	0.156383	0.103838
chr8	63178199	63178298	3773085	0	+	0.474747	(0.44,0.476]	chr8	349936	24	INTRON	INTRON	YTHDF3	ENSG00000185728.17	ENST00000617200.1:ENST00000623280.3:ENST00000539294.6:ENST00000621957.4:ENST00000517371.5:ENST00000615676.1:ENST00000621413.4:ENST00000612880.4:ENST00000617952.4:ENST00000621890.4:ENST00000619337.4:ENST00000613853.4:ENST00000621820.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	49	2	1.92837	2.36556	2.80275	0.0222222	0.0146513	0.124303	0.0982604
chr17	82908587	82908687	6695810	0	+	0.45	(0.44,0.476]	chr17	655016	6	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	TBCD	ENSG00000141556.22	ENST00000682479.1:ENST00000682722.1:ENST00000684464.1:ENST00000684544.1:ENST00000681983.1:ENST00000684361.1:ENST00000683184.1:ENST00000683282.1:ENST00000684408.1:ENST00000355528.9:ENST00000683444.1:ENST00000684776.1:ENST00000683041.1:ENST00000684760.1:ENST00000684349.1:ENST00000682213.1:ENST00000539345.6:ENST00000684000.1:ENST00000684188.1:ENST00000684429.1:ENST00000682610.1:ENST00000683821.1:ENST00000682654.1:ENST00000576160.6:ENST00000571712.5:ENST00000576996.5:ENST00000574801.5:ENST00000683584.1:ENST00000682099.1:ENST00000684559.1:ENST00000571316.5:ENST00000576760.5:ENST00000572984.5:ENST00000683839.1:ENST00000574975.5:ENST00000572953.5:ENST00000571796.5:ENST00000682315.1:ENST00000574422.1:ENST00000682225.1:ENST00000576677.6:ENST00000571618.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	20	250	2	2.15011	2.36543	2.58075	6.89848e-4	5.03477e-5	0.0240745	0.00582147
chr2	96355579	96355678	830411	0	+	0.343434	(0.32,0.35]	chr2	92843	8	INTRON	INTRON	NCAPH	ENSG00000121152.10	ENST00000240423.9:ENST00000427946.5:ENST00000435975.5:ENST00000477409.1:ENST00000455200.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	57	2	1.88255	2.365335	2.84812	0.0269187	0.0147575	0.135288	0.0983813
chr16	7961740	7961840	6440125	0	-	0.44	(0.408,0.44]	chr16	620339	670	INTRON	INTRON	ENSG00000260289	ENSG00000260289.2	ENST00000670665.1:ENST00000654046.1:ENST00000567103.2	lncRNA	lncRNA	lncRNA	lncRNA	13	162	2	2.21937	2.36532	2.51127	7.23431e-4	6.40147e-4	0.0247457	0.0228915
chr22	39422961	39423060	7515347	0	+	0.444444	(0.44,0.476]	chr22	767880	6	INTRON	INTRON	TAB1	ENSG00000100324.14	ENST00000216160.11:ENST00000331454.3:ENST00000473491.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	68	2	1.37831	2.36529	3.35227	0.0447298	0.0022005699999999998	0.163255	0.0417893
chr3	6513764	6513863	1356378	0	+	0.464646	(0.44,0.476]	chr3	142508	6	INTRON	INTRON	ENSG00000189229	ENSG00000189229.12	ENST00000660158.1:ENST00000433639.1:ENST00000655754.1:ENST00000653839.1:ENST00000662846.1:ENST00000659876.1:ENST00000414438.2:ENST00000658468.1:ENST00000414603.1:ENST00000669512.1:ENST00000667028.1:ENST00000655541.1:ENST00000668643.1:ENST00000671568.1:ENST00000671036.1:ENST00000669798.1:ENST00000655753.1:ENST00000655856.1:ENST00000658398.1:ENST00000661518.1:ENST00000661279.1:ENST00000655495.1:ENST00000663041.1:ENST00000659827.1:ENST00000667716.1:ENST00000662508.1:ENST00000668416.1:ENST00000658133.1:ENST00000659651.1:ENST00000342990.4:ENST00000660054.1:ENST00000671370.1	lncRNA	lncRNA	lncRNA	lncRNA	22	275	2	2.19053	2.36529	2.54005	4.65135e-4	4.78503e-5	0.0199528	0.00564978
chr7	75463308	75463408	3558700	0	-	0.49	(0.476,0.515]	chr7	331545	207	INTRON	INTRON	POM121C	ENSG00000272391.6	ENST00000615331.5:ENST00000398379.2	protein_coding	protein_coding	protein_coding	protein_coding	11	136	2	2.31621	2.36523	2.41425	0.00197914	5.41042e-4	0.0404068	0.0210961
chr16	31185369	31185465	6340612	0	+	0.333333	(0.32,0.35]	chr16	608337	3	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	FUS	ENSG00000089280.19	ENST00000566605.5:ENST00000254108.12:ENST00000380244.7:ENST00000487509.6:ENST00000568685.1:ENST00000570090.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	133	2	2.02072	2.365195	2.70967	0.0056508	0.00105927	0.0653997	0.0299929
chr8	102359470	102359570	4012219	0	-	0.27	[0,0.28]	chr8	367218	120	INTRON	INTRON	UBR5	ENSG00000104517.13	ENST00000520539.6:ENST00000220959.8:ENST00000521922.5	protein_coding	protein_coding	protein_coding	protein_coding	8	149	2	2.13248	2.365065	2.59765	0.00480628	0.00365944	0.0638089	0.0535094
chr6	37300739	37300839	2855747	0	+	0.31	(0.28,0.32]	chr6	269985	90	INTRON	INTRON	TBC1D22B	ENSG00000065491.8	ENST00000373491.3	protein_coding	protein_coding	protein_coding	protein_coding	4	62	2	1.81152	2.365015	2.91851	0.034446	0.0130672	0.147767	0.093385
chr4	73201101	73201201	2160249	0	-	0.24	[0,0.28]	chr4	212794	232	INTRON	INTRON	ANKRD17	ENSG00000132466.20	ENST00000358602.9:ENST00000558247.5:ENST00000330838.10:ENST00000509867.6:ENST00000561029.1:ENST00000559367.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	118	2	1.94614	2.36496	2.78378	0.0298508	0.00105071	0.129138	0.0298884
chr15	81706433	81706533	6242365	0	-	0.35	(0.32,0.35]	chr15	595853	439	INTRON	INTRON	ENSG00000259692	ENSG00000259692.6	ENST00000559428.2:ENST00000560054.6:ENST00000560097.1:ENST00000668584.1	lncRNA	lncRNA	lncRNA	lncRNA	2	36	2	2.21917	2.36489	2.51061	0.0641245	0.0364463	0.199279	0.138959
chr2	107702152	107702251	1205570	0	-	0.343434	(0.32,0.35]	chr2	128520	27	INTRON	INTRON	LINC01885:ENSG00000286769	ENSG00000237880.2:ENSG00000286769.1	ENST00000654481.1:ENST00000669817.1	lncRNA	lncRNA	lncRNA	lncRNA	2	36	2	2.21917	2.36489	2.51061	0.0641245	0.0364463	0.199279	0.138959
chr3	47621406	47621506	1683439	0	-	0.33	(0.32,0.35]	chr3	171972	107	INTRON	INTRON	SMARCC1	ENSG00000173473.11	ENST00000254480.10:ENST00000425518.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	36	2	2.21917	2.36489	2.51061	0.0641245	0.0364463	0.199279	0.138959
chr16	11904833	11904933	6446300	0	-	0.48	(0.476,0.515]	chr16	621130	8	INTRON	INTRON	GSPT1	ENSG00000103342.13	ENST00000434724.7:ENST00000439887.6:ENST00000420576.6:ENST00000568849.5:ENST00000562169.1	protein_coding	protein_coding	protein_coding	protein_coding	7	85	2	1.61324	2.364855	3.11647	0.026684	6.41912e-4	0.134419	0.0231685
chr6	75673467	75673565	2905676	0	+	0.469388	(0.44,0.476]	chr6	274554	24	INTRON	INTRON	SENP6	ENSG00000112701.18	ENST00000370010.6:ENST00000447266.7:ENST00000327284.12:ENST00000424947.6:ENST00000503501.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	41	2	1.77101	2.364805	2.9586	0.0693975	0.00758318	0.184298	0.0773151
chr7	65069892	65069990	3321699	0	+	0.459184	(0.44,0.476]	chr7	308837	13	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CCT6P3	ENSG00000234585.6	ENST00000419314.5:ENST00000426828.5:ENST00000452026.1	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript:transcribed_unprocessed_pseudogene	4	55	2	2.08277	2.3647299999999998	2.64669	0.0309998	0.0040295	0.13151	0.0578376
chr6	154797319	154797417	3002461	0	+	0.295918	(0.28,0.32]	chr6	280767	18	INTRON	INTRON	SCAF8	ENSG00000213079.10	ENST00000367186.7:ENST00000417268.3:ENST00000367178.8	protein_coding	protein_coding	protein_coding	protein_coding	4	71	2	1.91611	2.364725	2.81334	0.0539102	0.00248627	0.164153	0.0461207
chr1	42828423	42828523	84414	0	+	0.38	(0.378,0.408]	chr1	11098	23	INTRON	INTRON	ERMAP	ENSG00000164010.15	ENST00000372517.8:ENST00000643061.1:ENST00000645239.1:ENST00000647120.1:ENST00000487556.6:ENST00000642150.1:ENST00000372514.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	105	2	2.1653	2.364715	2.56413	0.00289537	0.0024299	0.0494641	0.0444645
chr6	158773707	158773807	3252873	0	-	0.58	(0.57,1]	chr6	302340	19	INTRON	INTRON	EZR	ENSG00000092820.19	ENST00000337147.11:ENST00000367075.4	protein_coding	protein_coding	protein_coding	protein_coding	7	44	2	1.7127	2.3647099999999996	3.01672	0.0180739	5.94133e-4	0.107124	0.0221865
chr17	60851875	60851975	6646907	0	+	0.31	(0.28,0.32]	chr17	649039	302	INTRON	INTRON	BCAS3	ENSG00000141376.23	ENST00000407086.8:ENST00000589222.5:ENST00000592848.5:ENST00000390652.9:ENST00000586241.1:ENST00000588462.5:ENST00000408905.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	103	2	2.32052	2.36464	2.40876	0.00612675	0.00588618	0.0708525	0.0669992
chrX	16741115	16741215	7626028	0	+	0.32	(0.28,0.32]	chrX	780887	45	INTRON	INTRON	SYAP1	ENSG00000169895.6	ENST00000380155.4	protein_coding	protein_coding	protein_coding	protein_coding	3	53	2	2.05458	2.364555	2.67453	0.0381508	0.021289	0.141764	0.123318
chr11	86042792	86042892	5014580	0	-	0.43	(0.408,0.44]	chr11	473022	108	INTRON	INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000630913.2:ENST00000528398.5:ENST00000356360.9:ENST00000534412.5:ENST00000531558.1:ENST00000531930.5:ENST00000532041.5:ENST00000525162.5:ENST00000528256.1:ENST00000528411.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	21	272	2	1.59337	2.364545	3.13572	0.00910743	9.42271e-7	0.0810449	5.53484e-4
chr7	99126585	99126684	3582970	0	-	0.444444	(0.44,0.476]	chr7	333710	50	INTRON	INTRON	SMURF1	ENSG00000198742.10	ENST00000361368.7:ENST00000361125.1:ENST00000472627.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	55	2	2.33899	2.36451	2.39003	0.0142027	0.0106488	0.0959987	0.0915714
chr6	87221681	87221779	2913926	0	+	0.306122	(0.28,0.32]	chr6	275307	26	INTRON	INTRON	ZNF292	ENSG00000188994.13	ENST00000369577.8:ENST00000369578.6:ENST00000518845.1:ENST00000339907.8:ENST00000496806.2:ENST00000524067.5:ENST00000485016.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	71	2	1.68411	2.36448	3.04485	0.0323543	0.00894006	0.145026	0.0799922
chr3	47688986	47689086	1684134	0	-	0.43	(0.408,0.44]	chr3	172047	2	SS5_PROX	SS5_PROX:INTRON	SMARCC1	ENSG00000173473.11	ENST00000254480.10:ENST00000425518.5:ENST00000462198.5:ENST00000485737.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	10	108	2	1.31633	2.364425	3.41252	0.0383278	1.61281e-4	0.158629	0.0116286
chr6	89818307	89818406	3162025	0	-	0.454545	(0.44,0.476]	chr6	294886	144	INTRON	INTRON	MDN1	ENSG00000112159.12	ENST00000369393.8:ENST00000629399.2:ENST00000439638.1	protein_coding	protein_coding	protein_coding	protein_coding	18	227	2	2.16499	2.364395	2.5638	4.9918e-4	1.44933e-4	0.020217099999999998	0.0110154
chrX	24078231	24078327	7630979	0	+	0.604167	(0.57,1]	chrX	781497	16	UTR3	UTR3:EXON_MRNA	EIF2S3	ENSG00000130741.11	ENST00000253039.9	protein_coding	protein_coding	protein_coding	protein_coding	8	43	2	1.69902	2.364345	3.02967	0.00985389	0.00471306	0.0838128	0.0631419
chr13	20070443	20070543	5453577	0	+	0.24	[0,0.28]	chr13	522569	22	INTRON	INTRON	ZMYM2	ENSG00000121741.17	ENST00000382874.6:ENST00000610343.5:ENST00000382871.3:ENST00000382883.7:ENST00000382870.7:ENST00000494061.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	80	2	2.24053	2.36433	2.48813	0.0256186	0.00953591	0.120376	0.0863913
chr22	29269762	29269862	7496072	0	+	0.51	(0.476,0.515]	chr22	764792	1	SS5_PROX	SS5_PROX:INTRON	EWSR1	ENSG00000182944.18	ENST00000629659.2:ENST00000332050.10:ENST00000444626.5:ENST00000447973.5:ENST00000436425.5:ENST00000397938.7:ENST00000406548.5:ENST00000485037.5:ENST00000437155.6:ENST00000415761.5:ENST00000331029.11:ENST00000483415.5:ENST00000414183.6:ENST00000333395.10:ENST00000332035.10:ENST00000455726.5:ENST00000493426.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	115	2	2.24352	2.36424	2.48496	0.0019689	0.00143091	0.0411469	0.0340925
chr2	84996439	84996539	820516	0	+	0.54	(0.515,0.57]	chr2	91419	238	INTRON	INTRON	KCMF1	ENSG00000176407.18	ENST00000456682.1:ENST00000409785.9:ENST00000428691.5:ENST00000453448.1	protein_coding	protein_coding	protein_coding	protein_coding	8	86	2	2.21892	2.364225	2.50953	0.0023952	0.00198472	0.0440612	0.0411469
chr2	32006586	32006686	1091077	0	-	0.41	(0.408,0.44]	chr2	116913	434	INTRON	INTRON	MEMO1:DPY30	ENSG00000162959.14:ENSG00000162961.14	ENST00000295065.9:ENST00000446765.5:ENST00000404530.6:ENST00000490459.5:ENST00000426310.6:ENST00000413686.1:ENST00000407893.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	92	2	1.83931	2.36422	2.88913	0.00806984	0.00185044	0.0806514	0.0388609
chr11	3385665	3385764	4722886	0	+	0.373737	(0.35,0.378]	chr11	436986	3	INTRON	INTRON	TSSC2	ENSG00000223756.8	ENST00000685598.1:ENST00000691197.1:ENST00000533775.6:ENST00000690471.1:ENST00000529482.5:ENST00000693396.1:ENST00000685130.1:ENST00000526284.5:ENST00000526488.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	11	153	2	2.126	2.3642149999999997	2.60243	0.00239546	6.72784e-4	0.0440612	0.023543
chr17	81570849	81570944	6848925	0	-	0.410526	(0.408,0.44]	chr17	678151	14	INTRON	INTRON	NPLOC4	ENSG00000182446.14	ENST00000331134.11:ENST00000571714.5:ENST00000576713.6:ENST00000374747.9:ENST00000574897.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	92	2	1.77749	2.364185	2.95088	0.0104439	0.00142252	0.0902734	0.0340865
chr7	130194313	130194412	3638642	0	-	0.434343	(0.408,0.44]	chr7	338395	11	INTRON	INTRON	TMEM209	ENSG00000146842.17	ENST00000397622.7:ENST00000473456.5:ENST00000462753.5	protein_coding	protein_coding	protein_coding	protein_coding	4	50	2	1.64062	2.364	3.08738	0.0557275	0.00478231	0.165463	0.0636201
chr1	235294831	235294931	663529	0	-	0.29	(0.28,0.32]	chr1	78552	337	INTRON	INTRON	ARID4B	ENSG00000054267.22	ENST00000349213.7:ENST00000366603.6:ENST00000264183.9:ENST00000421364.5:ENST00000491632.5:ENST00000418304.1:ENST00000466653.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	52	2	1.86684	2.363985	2.86113	0.0605813	0.0122675	0.171122	0.0969406
chr1	241865148	241865247	344550	0	+	0.30303	(0.28,0.32]	chr1	40133	33	INTRON	INTRON	EXO1	ENSG00000174371.17	ENST00000366548.8:ENST00000348581.9:ENST00000518483.5	protein_coding	protein_coding	protein_coding	protein_coding	3	52	2	1.86684	2.363985	2.86113	0.0605813	0.0122675	0.171122	0.0969406
chr2	26373541	26373629	715290	0	+	0.431818	(0.408,0.44]	chr2	82592	3	CDS	CDS:EXON_MRNA:INTRON	SELENOI	ENSG00000138018.19	ENST00000260585.12:ENST00000447170.1	protein_coding	protein_coding	protein_coding	protein_coding	8	106	2	1.94531	2.3639799999999997	2.78265	0.0136489	2.28487e-4	0.0949306	0.0133228
chr12	122599436	122599536	5241360	0	+	0.51	(0.476,0.515]	chr12	497814	11	INTRON	INTRON	KNTC1	ENSG00000184445.12	ENST00000450485.6:ENST00000333479.12:ENST00000535186.1:ENST00000423927.2:ENST00000545065.1:ENST00000377192.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	78	2	1.63962	2.36396	3.0883	0.0346854	7.31567e-4	0.148144	0.0248722
chr5	149494767	149494866	2750495	0	-	0.292929	(0.28,0.32]	chr5	258992	19	UTR3	UTR3:EXON_MRNA	CSNK1A1:ENSG00000230551	ENSG00000113712.19:ENSG00000230551.4	ENST00000261798.10:ENST00000377843.8:ENST00000657001.1:ENST00000499521.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron	12	197	2	2.23066	2.3638399999999997	2.49702	0.00276334	4.57941e-4	0.0469265	0.0193643
chrX	154797753	154797852	7915534	0	-	0.363636	(0.35,0.378]	chrX	806172	51	INTRON	INTRON	MPP1	ENSG00000130830.15	ENST00000369534.8:ENST00000413259.7:ENST00000439370.5:ENST00000393531.5:ENST00000453245.5:ENST00000494170.1:ENST00000462825.5:ENST00000393529.5:ENST00000475943.5:ENST00000428488.1:ENST00000417435.5:ENST00000369531.1:ENST00000471821.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	101	2	2.10109	2.3637449999999998	2.6264	0.014685	5.94723e-4	0.0983813	0.0221865
chr8	100917713	100917812	4005622	0	-	0.323232	(0.32,0.35]	chr8	366642	13	UTR3	UTR3:EXON_MRNA	YWHAZ	ENSG00000164924.18	ENST00000395958.6:ENST00000395957.6	protein_coding	protein_coding	protein_coding	protein_coding	4	58	2	1.64769	2.3637200000000003	3.07975	0.0578603	0.00554235	0.167723	0.0674105
chr10	63414546	63414646	4634877	0	-	0.35	(0.32,0.35]	chr10	426236	337	INTRON	INTRON	JMJD1C	ENSG00000171988.20	ENST00000399262.7:ENST00000633035.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	57	2	1.93031	2.36369	2.79707	0.0231421	0.0170923	0.126939	0.104099
chr7	74517348	74517445	3334295	0	+	0.42268	(0.408,0.44]	chr7	310197	14	INTRON	INTRON	GTF2IRD1	ENSG00000006704.11	ENST00000265755.7:ENST00000424337.7:ENST00000455841.6:ENST00000476977.5:ENST00000489094.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	41	2	2.21238	2.36365	2.51492	0.0329839	0.0193525	0.133816	0.119831
chr10	63377528	63377627	4634506	0	-	0.464646	(0.44,0.476]	chr10	426230	41	INTRON	INTRON	JMJD1C	ENSG00000171988.20	ENST00000399262.7:ENST00000633035.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	66	2	1.98938	2.363595	2.73781	0.0198602	0.00276493	0.109608	0.04867
chr18	2755826	2755924	6865908	0	+	0.408163	(0.378,0.408]	chr18	680131	12	INTRON	INTRON	SMCHD1	ENSG00000101596.17	ENST00000320876.11:ENST00000688342.1:ENST00000693213.1:ENST00000577880.5:ENST00000584897.5:ENST00000690757.1:ENST00000686763.1:ENST00000686864.1:ENST00000688708.1:ENST00000645355.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	57	2	2.16303	2.363555	2.56408	0.0252473	0.00566993	0.12011	0.0678837
chr5	179577136	179577236	2560045	0	+	0.38	(0.378,0.408]	chr5	244739	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	RUFY1	ENSG00000176783.15	ENST00000319449.9:ENST00000393448.6:ENST00000393438.6:ENST00000437570.6:ENST00000508609.5:ENST00000514238.2:ENST00000502434.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	57	2	2.16303	2.363555	2.56408	0.0252473	0.00566993	0.12011	0.0678837
chr17	36526864	36526957	6759569	0	-	0.526882	(0.515,0.57]	chr17	664570	12	INTRON	INTRON	MYO19	ENSG00000278259.5	ENST00000614623.5:ENST00000610992.4:ENST00000621550.4:ENST00000610930.4:ENST00000621344.4:ENST00000620640.4:ENST00000616159.4:ENST00000622055.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	48	2	2.1885	2.363475	2.53845	0.0202537	0.00632226	0.121364	0.0687526
chr17	36961785	36961885	6602639	0	+	0.52	(0.515,0.57]	chr17	642673	75	INTRON	INTRON	AATF	ENSG00000275700.6	ENST00000680340.1:ENST00000680356.1:ENST00000616434.2:ENST00000680579.1:ENST00000681800.1:ENST00000680330.1:ENST00000680807.1:ENST00000679985.1:ENST00000679508.1:ENST00000619387.5:ENST00000679997.1:ENST00000613840.1:ENST00000681062.1:ENST00000679881.1:ENST00000680782.1:ENST00000679600.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	48	2	2.1885	2.363475	2.53845	0.0202537	0.00632226	0.121364	0.0687526
chr1	65428009	65428105	137259	0	+	0.385417	(0.378,0.408]	chr1	15482	1	INTRON	INTRON	LEPROT:LEPR	ENSG00000213625.9:ENSG00000116678.20	ENST00000475108.5:ENST00000371060.7:ENST00000371059.7:ENST00000349533.11:ENST00000371065.9:ENST00000488747.5:ENST00000484243.1:ENST00000613538.1	protein_coding	protein_coding	protein_coding	protein_coding	4	51	2	1.99678	2.363355	2.72993	0.0188736	0.0177959	0.113452	0.108861
chr7	5225028	5225126	3272321	0	+	0.387755	(0.378,0.408]	chr7	304133	20	INTRON	INTRON	WIPI2	ENSG00000157954.15	ENST00000401525.7:ENST00000288828.9:ENST00000404704.7:ENST00000466014.5:ENST00000382384.6:ENST00000484262.1:ENST00000480238.5:ENST00000488359.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	51	2	1.99678	2.363355	2.72993	0.0188736	0.0177959	0.113452	0.108861
chr9	137454943	137455040	4377318	0	-	0.628866	(0.57,1]	chr9	403590	1	SS5_PROX	SS5_PROX:INTRON	NSMF	ENSG00000165802.23	ENST00000371475.9:ENST00000371473.7:ENST00000371474.7:ENST00000437259.5:ENST00000371472.6:ENST00000265663.12	protein_coding	protein_coding	protein_coding	protein_coding	4	27	2	1.92756	2.363225	2.79889	0.0220439	0.0110274	0.115395	0.0927187
chr16	89459582	89459682	6543292	0	-	0.26	[0,0.28]	chr16	634281	279	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	99	2	1.51089	2.36316	3.21543	0.0339857	0.00629013	0.146815	0.0687434
chr19	36228919	36229019	7057564	0	+	0.39	(0.378,0.408]	chr19	704669	1	SS5_PROX	SS5_PROX:INTRON	ZNF146	ENSG00000167635.12	ENST00000456324.5:ENST00000591063.5:ENST00000443387.3:ENST00000586094.5:ENST00000587285.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	32	2	2.26252	2.363125	2.46373	0.056222	0.0382831	0.18407	0.141795
chr7	66927626	66927725	3326297	0	+	0.494949	(0.476,0.515]	chr7	309335	50	INTRON	INTRON	TMEM248	ENSG00000106609.16	ENST00000341567.8:ENST00000607045.5:ENST00000433271.6:ENST00000413593.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	75	2	1.95469	2.3631	2.77151	0.0115753	0.00288481	0.0962115	0.0475859
chr5	6607884	6607980	2566515	0	-	0.291667	(0.28,0.32]	chr5	245907	1	INTRON	INTRON	NSUN2	ENSG00000037474.15	ENST00000264670.11:ENST00000504374.5:ENST00000505892.5:ENST00000506139.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	85	2	2.06884	2.363085	2.65733	0.0152581	0.0061571	0.108569	0.0676501
chr13	50022916	50023016	5593990	0	-	0.56	(0.515,0.57]	chr13	534671	243	INTRON	INTRON	DLEU2	ENSG00000231607.14	ENST00000621282.4	lncRNA	lncRNA	lncRNA	lncRNA	5	57	2	2.27238	2.3630649999999997	2.45375	0.0161808	0.00273605	0.101453	0.0483437
chr2	171116639	171116739	1263655	0	-	0.42	(0.408,0.44]	chr2	133913	250	INTRON	INTRON	TLK1	ENSG00000198586.14	ENST00000431350.7:ENST00000360843.7:ENST00000359766.7:ENST00000521943.5:ENST00000409443.6:ENST00000413010.5:ENST00000470340.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	80	2	2.08486	2.3630649999999997	2.64127	0.0145898	0.00125199	0.0981689	0.0328543
chr7	40053565	40053665	3311665	0	+	0.4	(0.378,0.408]	chr7	307518	45	INTRON	INTRON	CDK13	ENSG00000065883.17	ENST00000340829.10:ENST00000181839.10:ENST00000613626.4:ENST00000646039.1:ENST00000643859.1:ENST00000484589.2:ENST00000643915.1:ENST00000645470.1:ENST00000642592.1	protein_coding	protein_coding	protein_coding	protein_coding	4	51	2	1.72045	2.3630649999999997	3.00568	0.0424671	0.00811866	0.161763	0.0766625
chr7	152277647	152277746	3679698	0	-	0.30303	(0.28,0.32]	chr7	341617	34	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000684262.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	70	2	2.05458	2.363055	2.67153	0.0381508	0.00436402	0.141764	0.060356
chr22	19408082	19408182	7554186	0	-	0.5	(0.476,0.515]	chr22	772305	2	SS5_PROX	SS5_PROX:INTRON	HIRA:C22orf39	ENSG00000100084.14:ENSG00000242259.9	ENST00000263208.5:ENST00000340170.8:ENST00000509549.5:ENST00000464189.5:ENST00000452818.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	41	2	2.32001	2.363045	2.40608	0.0425709	0.0136217	0.148082	0.101682
chr17	39397764	39397864	6766614	0	-	0.31	(0.28,0.32]	chr17	665497	542	INTRON	INTRON	FBXL20	ENSG00000108306.13	ENST00000264658.11:ENST00000583610.5:ENST00000394294.7:ENST00000577399.5:ENST00000647139.1	protein_coding	protein_coding	protein_coding	protein_coding	6	79	2	1.56481	2.3629100000000003	3.16101	0.0339805	0.0061861	0.146815	0.0677395
chr11	756096	756190	4720423	0	+	0.382979	(0.378,0.408]	chr11	436398	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	TALDO1	ENSG00000177156.11	ENST00000528070.5:ENST00000532685.1:ENST00000528097.5:ENST00000530440.1:ENST00000319006.8:ENST00000530119.5:ENST00000533796.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	65	2	1.67073	2.362875	3.05502	0.0219426	0.00689519	0.123836	0.0717484
chr10	45867006	45867106	4607601	0	-	0.32	(0.28,0.32]	chr10	424444	35	INTRON	INTRON	PARGP1	ENSG00000239883.9	ENST00000440803.7:ENST00000688192.1:ENST00000686367.1:ENST00000693310.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	4	62	2	1.76378	2.362825	2.96187	0.0395495	0.0114995	0.161534	0.0889104
chr12	132794446	132794545	5449860	0	-	0.545455	(0.515,0.57]	chr12	522042	28	INTRON	INTRON	GOLGA3	ENSG00000090615.16	ENST00000204726.9:ENST00000450791.8:ENST00000693666.1:ENST00000688114.1:ENST00000687190.1:ENST00000690511.1:ENST00000685283.1:ENST00000691696.1:ENST00000691636.1:ENST00000690897.1:ENST00000690465.1:ENST00000456883.7:ENST00000692253.1:ENST00000687502.1:ENST00000688772.1:ENST00000687479.1:ENST00000690709.1:ENST00000545875.4:ENST00000688251.1:ENST00000690573.1:ENST00000685195.1:ENST00000686425.1:ENST00000693437.1:ENST00000692831.1:ENST00000688068.1:ENST00000692951.1:ENST00000689441.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	80	2	2.09303	2.362765	2.6325	0.00439001	0.00230048	0.0585064	0.0439974
chr1	65598062	65598159	138973	0	+	0.391753	(0.378,0.408]	chr1	15530	11	INTRON	INTRON	LEPR	ENSG00000116678.20	ENST00000371060.7:ENST00000371059.7:ENST00000349533.11:ENST00000616738.4:ENST00000344610.12:ENST00000462765.5:ENST00000371058.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	84	2	2.2708	2.362725	2.45465	0.00646593	0.00381582	0.073179	0.0542786
chr17	31124158	31124258	6591425	0	+	0.21	[0,0.28]	chr17	641053	284	INTRON	INTRON	NF1	ENSG00000196712.20	ENST00000696138.1:ENST00000356175.7:ENST00000487476.5:ENST00000691014.1:ENST00000358273.9:ENST00000431387.8:ENST00000579081.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	81	2	1.67675	2.36271	3.04867	0.0352695	0.0104221	0.150332	0.085482
chr12	57783514	57783614	5148710	0	+	0.42	(0.408,0.44]	chr12	487170	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TSFM	ENSG00000123297.20	ENST00000540550.6:ENST00000323833.12:ENST00000651899.1:ENST00000417094.5:ENST00000548851.5:ENST00000550559.5:ENST00000652027.2:ENST00000651066.1:ENST00000543727.5:ENST00000434359.5:ENST00000457189.1:ENST00000497617.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	42	2	2.05947	2.3626300000000002	2.66579	0.0333232	0.019342	0.134145	0.119831
chr14	34962331	34962431	5868967	0	-	0.42	(0.408,0.44]	chr14	557461	70	INTRON	INTRON	SRP54-AS1	ENSG00000258704.7	ENST00000692503.1:ENST00000690110.1:ENST00000690001.1:ENST00000688072.1:ENST00000693002.1:ENST00000556355.5:ENST00000555015.5:ENST00000693259.1:ENST00000636540.1	transcribed_unitary_pseudogene	processed_transcript	transcribed_unitary_pseudogene	processed_transcript:transcribed_unitary_pseudogene	3	42	2	2.05947	2.3626300000000002	2.66579	0.0333232	0.019342	0.134145	0.119831
chr2	62300137	62300237	790328	0	+	0.32	(0.28,0.32]	chr2	88708	23	INTRON	INTRON	ENSG00000228541	ENSG00000228541.2	ENST00000688476.1:ENST00000689590.1:ENST00000687402.1:ENST00000687773.1	lncRNA	lncRNA	lncRNA	lncRNA	5	85	2	2.09145	2.3626199999999997	2.63379	0.0172565	0.00503861	0.104099	0.0646039
chr22	19102065	19102165	7551811	0	-	0.38	(0.378,0.408]	chr22	771903	122	INTRON	INTRON	DGCR2	ENSG00000070413.20	ENST00000537045.5:ENST00000545799.5:ENST00000263196.12:ENST00000389262.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	69	2	2.26009	2.36259	2.46509	0.0188651	0.00287152	0.108861	0.0494641
chr5	140493232	140493332	2503763	0	+	0.5	(0.476,0.515]	chr5	239246	58	INTRON	INTRON	ANKHD1	ENSG00000131503.21	ENST00000297183.10:ENST00000360839.7:ENST00000421134.5:ENST00000246149.10:ENST00000412116.5:ENST00000506755.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	41	2	1.8388	2.3625499999999997	2.8863	0.0564473	0.0111679	0.184423	0.0877435
chr1	243161280	243161378	667760	0	-	0.336735	(0.32,0.35]	chr1	79242	45	INTRON	INTRON	CEP170	ENSG00000143702.16	ENST00000366544.5:ENST00000366543.5:ENST00000366542.6:ENST00000336415.8:ENST00000490813.5:ENST00000413359.6:ENST00000464936.5:ENST00000492145.1	protein_coding	protein_coding	protein_coding	protein_coding	4	64	2	2.18092	2.3625	2.54408	0.0256608	0.00659077	0.120491	0.0737338
chr2	197876597	197876697	969822	0	+	0.35	(0.32,0.35]	chr2	104858	659	INTRON	INTRON	PLCL1	ENSG00000115896.16	ENST00000428675.6:ENST00000435320.1:ENST00000487695.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	64	2	2.18092	2.3625	2.54408	0.0256608	0.00659077	0.120491	0.0737338
chr1	77586654	77586754	492497	0	-	0.29	(0.28,0.32]	chr1	58292	16	INTRON	INTRON	ZZZ3	ENSG00000036549.13	ENST00000370801.8:ENST00000481346.5:ENST00000476275.5:ENST00000370798.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	38	2	2.18975	2.362485	2.53522	0.0776042	0.0310424	0.196285	0.143457
chr22	21577670	21577770	7481804	0	+	0.39	(0.378,0.408]	chr22	763232	89	INTRON	INTRON	UBE2L3	ENSG00000185651.16	ENST00000458578.6:ENST00000545681.2:ENST00000696046.1:ENST00000342192.9:ENST00000496722.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	62	2	2.18994	2.362485	2.53503	0.0319942	0.00448961	0.13174	0.0612035
chr4	144122571	144122671	2251896	0	-	0.32	(0.28,0.32]	chr4	220040	3	SS5_PROX	SS5_PROX:INTRON	GYPA	ENSG00000170180.22	ENST00000641688.3:ENST00000616983.4:ENST00000360771.8:ENST00000642295.1:ENST00000324022.14:ENST00000646447.1:ENST00000535709.6:ENST00000508337.1:ENST00000643254.1:ENST00000643148.1:ENST00000642738.1:ENST00000642713.1:ENST00000512064.5:ENST00000512789.5:ENST00000504786.5:ENST00000503627.2:ENST00000509346.5:ENST00000514603.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	38	2	2.18975	2.362485	2.53522	0.0776042	0.0310424	0.196285	0.143457
chr7	10679725	10679824	3483577	0	-	0.30303	(0.28,0.32]	chr7	325772	1178	INTRON	INTRON	MGC4859	ENSG00000283117.1	ENST00000634803.1	lncRNA	lncRNA	lncRNA	lncRNA	2	38	2	2.18975	2.362485	2.53522	0.0776042	0.0310424	0.196285	0.143457
chr8	47971868	47971968	3752158	0	+	0.3	(0.28,0.32]	chr8	349011	4	SS5_PROX	SS5_PROX:INTRON	MCM4	ENSG00000104738.18	ENST00000649838.1:ENST00000648407.1:ENST00000649919.1:ENST00000262105.6:ENST00000649973.1:ENST00000648519.1:ENST00000650216.1:ENST00000647877.1:ENST00000520637.2:ENST00000650327.1:ENST00000523853.1:ENST00000518382.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	38	2	2.18975	2.362485	2.53522	0.0776042	0.0310424	0.196285	0.143457
chr18	2682414	2682514	6865132	0	+	0.48	(0.476,0.515]	chr18	679964	79	INTRON	INTRON	SMCHD1	ENSG00000101596.17	ENST00000320876.11:ENST00000688342.1:ENST00000684915.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	43	2	2.13854	2.362345	2.58615	0.0776563	0.00515536	0.196285	0.0650394
chr7	107068926	107069026	3377408	0	+	0.48	(0.476,0.515]	chr7	316240	234	INTRON	INTRON	PRKAR2B	ENSG00000005249.13	ENST00000265717.5	protein_coding	protein_coding	protein_coding	protein_coding	3	43	2	2.13854	2.362345	2.58615	0.0776563	0.00515536	0.196285	0.0650394
chr9	37156238	37156338	4118016	0	+	0.29	(0.28,0.32]	chr9	375382	84	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000322831.6:ENST00000461038.5:ENST00000488607.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	108	2	1.45235	2.36228	3.27221	0.0543728	3.15212e-4	0.164972	0.0159645
chr16	68088513	68088606	6370254	0	+	0.408602	(0.408,0.44]	chr16	612184	14	INTRON	INTRON	ENSG00000261864:NFATC3	ENSG00000261864.1:ENSG00000072736.19	ENST00000548144.1:ENST00000563319.5:ENST00000569766.5:ENST00000553077.5:ENST00000566301.5:ENST00000549350.5:ENST00000566893.5:ENST00000575270.5:ENST00000561714.5:ENST00000346183.8:ENST00000568466.6:ENST00000539828.6:ENST00000562171.1:ENST00000349223.9:ENST00000329524.8:ENST00000379165.8:ENST00000562926.5:ENST00000570212.5:ENST00000563796.5:ENST00000567152.5:ENST00000563288.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA:processed_transcript	11	143	2	1.80815	2.3622699999999996	2.91639	0.0109379	4.469e-5	0.0873034	0.00542803
chr20	49284590	49284689	7284667	0	+	0.434343	(0.408,0.44]	chr20	741065	24	INTRON	INTRON	ZFAS1	ENSG00000177410.13	ENST00000371743.8:ENST00000417721.5:ENST00000441722.5:ENST00000450535.5:ENST00000458653.5:ENST00000428008.6:ENST00000620594.2:ENST00000652916.1:ENST00000326677.9:ENST00000659056.1	lncRNA	lncRNA	lncRNA	lncRNA	29	360	2	2.12437	2.362215	2.60006	3.42689e-4	2.38576e-5	0.017199	0.00383194
chr18	2695575	2695670	6865269	0	+	0.4	(0.378,0.408]	chr18	679986	5	INTRON	INTRON	SMCHD1	ENSG00000101596.17	ENST00000320876.11:ENST00000688342.1:ENST00000684915.1:ENST00000581226.1:ENST00000693213.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	73	2	1.76983	2.36221	2.95459	0.0109303	0.00957623	0.0924702	0.0820838
chr4	470976	471076	2092889	0	-	0.27	[0,0.28]	chr4	206783	262	INTRON	INTRON	ABCA11P:ZNF721	ENSG00000251595.7:ENSG00000182903.16	ENST00000451020.6:ENST00000514396.5:ENST00000507854.1:ENST00000515578.5:ENST00000506646.5:ENST00000507078.1:ENST00000511833.3:ENST00000338977.5:ENST00000505900.1	protein_coding	protein_coding	protein_coding:transcribed_processed_pseudogene	protein_coding:nonsense_mediated_decay:processed_transcript	4	80	2	2.27384	2.3621299999999996	2.45042	0.0233847	0.010819	0.11839	0.0920575
chr6	4783405	4783505	2790932	0	+	0.46	(0.44,0.476]	chr6	263598	62	INTRON	INTRON	CDYL	ENSG00000153046.18	ENST00000328908.9:ENST00000491864.1:ENST00000440139.5:ENST00000483019.1:ENST00000397588.8:ENST00000472453.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	15	189	2	2.19056	2.362095	2.53363	0.00147358	9.8404e-5	0.0348596	0.00834688
chr17	30130232	30130332	6587524	0	+	0.45	(0.44,0.476]	chr17	640563	21	INTRON	INTRON	NSRP1	ENSG00000126653.18	ENST00000540900.7:ENST00000612959.4:ENST00000247026.10:ENST00000577289.6:ENST00000584154.5:ENST00000394826.8:ENST00000475652.5:ENST00000584317.5:ENST00000583301.5:ENST00000585881.5:ENST00000467446.6:ENST00000580103.6:ENST00000581048.5:ENST00000588614.1:ENST00000589608.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	85	2	1.38203	2.36206	3.34209	0.058781	1.47653e-4	0.167915	0.0105526
chr1	39866966	39867066	428107	0	-	0.36	(0.35,0.378]	chr1	52028	9	INTRON	INTRON	TRIT1	ENSG00000043514.17	ENST00000316891.10:ENST00000648678.1:ENST00000537440.5:ENST00000372818.5:ENST00000462797.5:ENST00000441669.6:ENST00000495175.6:ENST00000491865.5:ENST00000541099.5:ENST00000492612.6:ENST00000489945.5:ENST00000486825.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	61	2	1.59505	2.36205	3.12905	0.040425	0.00566312	0.161534	0.0653997
chr7	158864492	158864591	3456208	0	+	0.494949	(0.476,0.515]	chr7	323132	74	INTRON	INTRON	DYNC2I1	ENSG00000126870.16	ENST00000407559.8	protein_coding	protein_coding	protein_coding	protein_coding	3	41	2	1.99197	2.36201	2.73205	0.039572	0.0159328	0.143072	0.109464
chr9	133373339	133373438	4370421	0	-	0.484848	(0.476,0.515]	chr9	402198	54	INTRON	INTRON	SURF4	ENSG00000148248.14	ENST00000545297.5:ENST00000613129.4:ENST00000618229.4:ENST00000371989.8:ENST00000485435.6:ENST00000467910.5:ENST00000371991.3:ENST00000371982.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	41	2	1.99197	2.36201	2.73205	0.039572	0.0159328	0.143072	0.109464
chr7	111411198	111411298	3622598	0	-	0.32	(0.28,0.32]	chr7	337108	184	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000452895.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding	5	87	2	1.90249	2.362	2.82151	0.0261803	0.00341865	0.133676	0.0517761
chr17	1392833	1392933	6699535	0	-	0.38	(0.378,0.408]	chr17	655552	227	INTRON	INTRON	YWHAE	ENSG00000108953.17	ENST00000264335.13:ENST00000571732.5:ENST00000573026.1:ENST00000573196.5:ENST00000575977.1:ENST00000469398.5:ENST00000486241.1:ENST00000489287.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	79	2	1.89052	2.36198	2.83344	0.0148147	0.00244811	0.106702	0.0445777
chr9	131489285	131489384	4217956	0	+	0.50505	(0.476,0.515]	chr9	386870	8	INTRON	INTRON	PRRC2B	ENSG00000288701.1	ENST00000684596.1:ENST00000683519.1:ENST00000682501.1:ENST00000682662.1:ENST00000683161.1	protein_coding	protein_coding	protein_coding	protein_coding	8	91	2	1.66417	2.361875	3.05958	0.0164481	8.34691e-4	0.110077	0.0266389
chr4	17947084	17947184	2117544	0	-	0.41	(0.408,0.44]	chr4	209129	374	INTRON	INTRON	LCORL	ENSG00000178177.17	ENST00000635767.2:ENST00000326877.8:ENST00000675131.1:ENST00000675143.1:ENST00000637787.1:ENST00000675605.1:ENST00000510451.5:ENST00000510121.5:ENST00000675927.1:ENST00000382224.5:ENST00000382226.5:ENST00000676061.1:ENST00000674942.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	42	2	2.27698	2.36186	2.44674	0.0583528	0.00868283	0.167723	0.0842798
chr7	149200045	149200144	3445373	0	+	0.373737	(0.35,0.378]	chr7	321367	9	INTRON	INTRON	ZNF282	ENSG00000170265.12	ENST00000610704.5:ENST00000479907.1	protein_coding	protein_coding	protein_coding	protein_coding	4	55	2	1.7942	2.36186	2.92952	0.0378648	0.00881187	0.141212	0.084878
chr5	131162284	131162381	2716380	0	-	0.43299	(0.408,0.44]	chr5	255393	16	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	HINT1	ENSG00000169567.13	ENST00000675100.1:ENST00000675372.1:ENST00000304043.10:ENST00000511475.6:ENST00000675135.1:ENST00000508495.5:ENST00000508488.2:ENST00000676117.1:ENST00000520028.2:ENST00000506908.2:ENST00000675491.1:ENST00000513345.6:ENST00000513012.2:ENST00000506207.2:ENST00000504202.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	60	2	1.93243	2.361835	2.79124	0.0441194	0.00276922	0.162255	0.0469265
chr5	154860664	154860761	2527696	0	+	0.402062	(0.378,0.408]	chr5	241732	4	INTRON	INTRON	CNOT8	ENSG00000155508.14	ENST00000521174.5:ENST00000523698.5:ENST00000517876.5:ENST00000520472.5:ENST00000519211.5:ENST00000522458.5:ENST00000403027.6:ENST00000521450.5:ENST00000519903.5:ENST00000517568.5:ENST00000524105.5:ENST00000519430.5:ENST00000285896.11:ENST00000521583.5:ENST00000520671.5:ENST00000518028.5:ENST00000519404.5:ENST00000521729.5:ENST00000519394.5:ENST00000518775.5:ENST00000522644.5:ENST00000521402.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	69	2	2.06535	2.36175	2.65815	0.0159849	0.00391167	0.101453	0.0569957
chr5	137989613	137989713	2730361	0	-	0.45	(0.44,0.476]	chr5	256973	9	INTRON	INTRON	FAM13B	ENSG00000031003.11	ENST00000689681.1:ENST00000033079.7:ENST00000425075.6:ENST00000420893.6	protein_coding	protein_coding	protein_coding	protein_coding	3	41	2	1.9039	2.36143	2.81896	0.0501498	0.0120766	0.156383	0.0962311
chr1	21128908	21129008	393150	0	-	0.35	(0.32,0.35]	chr1	46836	159	INTRON	INTRON	EIF4G3	ENSG00000075151.24	ENST00000374935.7:ENST00000602326.6:ENST00000685872.1:ENST00000686579.1:ENST00000688741.1:ENST00000400422.6:ENST00000634879.2:ENST00000693470.1:ENST00000685814.1:ENST00000356916.7:ENST00000682284.1:ENST00000438975.5:ENST00000411888.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	48	2	1.94202	2.3613750000000002	2.78073	0.0486128	0.01481	0.153946	0.106702
chr1	61091178	61091278	127479	0	+	0.35	(0.32,0.35]	chr1	14770	26	EXON_MRNA	EXON_MRNA:INTRON	NFIA	ENSG00000162599.17	ENST00000371191.5:ENST00000664495.1:ENST00000476646.5:ENST00000407417.7:ENST00000479364.1:ENST00000371189.8:ENST00000670151.1:ENST00000664149.1:ENST00000662015.1:ENST00000403491.8:ENST00000371187.7:ENST00000485903.6:ENST00000371185.6:ENST00000371184.6:ENST00000603233.2:ENST00000496712.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	48	2	1.94202	2.3613750000000002	2.78073	0.0486128	0.01481	0.153946	0.106702
chr3	17539142	17539241	1628382	0	-	0.333333	(0.32,0.35]	chr3	168205	141	INTRON	INTRON	TBC1D5	ENSG00000131374.15	ENST00000253692.11:ENST00000696125.1:ENST00000414318.2:ENST00000429383.8:ENST00000446818.6:ENST00000415814.6:ENST00000452492.6:ENST00000412981.5:ENST00000428355.5:ENST00000425944.5:ENST00000430169.5:ENST00000445294.5:ENST00000414349.5:ENST00000443499.6:ENST00000444756.5:ENST00000497531.5:ENST00000443386.5:ENST00000507877.5:ENST00000446863.5:ENST00000434420.1:ENST00000444471.5:ENST00000486224.5:ENST00000433533.5:ENST00000481396.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	48	2	1.94202	2.3613750000000002	2.78073	0.0486128	0.01481	0.153946	0.106702
chr7	32584643	32584743	3304146	0	+	0.36	(0.35,0.378]	chr7	306851	7	UTR3	UTR3:EXON_MRNA:INTRON	AVL9	ENSG00000105778.20	ENST00000318709.9:ENST00000409301.5:ENST00000446718.1:ENST00000497020.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	74	2	1.38867	2.36135	3.33403	0.0441117	0.00272701	0.162255	0.0467523
chr12	106958769	106958869	5218536	0	+	0.5	(0.476,0.515]	chr12	493939	1	SS3_PROX	SS3_PROX:INTRON	TMEM263	ENSG00000151135.10	ENST00000548125.5:ENST00000547242.5:ENST00000551489.5:ENST00000550344.5:ENST00000280756.9:ENST00000547081.1	protein_coding	protein_coding	protein_coding	protein_coding	10	128	2	2.06195	2.361325	2.6607	0.00539948	2.14753e-4	0.064414	0.0128622
chr4	126512126	126512226	2235830	0	-	0.47	(0.44,0.476]	chr4	219023	466	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	12	135	2	1.99994	2.36125	2.72256	0.00159453	0.00111786	0.0367961	0.0306954
chr4	10074715	10074810	2106981	0	-	0.305263	(0.28,0.32]	chr4	208390	5	UTR3	UTR3:EXON_MRNA	WDR1	ENSG00000071127.17	ENST00000499869.7:ENST00000382451.6:ENST00000382452.6	protein_coding	protein_coding	protein_coding	protein_coding	5	71	2	1.76061	2.36124	2.96187	0.0253826	0.0114995	0.133676	0.0889104
chr20	5570539	5570639	7311928	0	-	0.51	(0.476,0.515]	chr20	744560	3	SS3_PROX	SS3_PROX:INTRON	GPCPD1	ENSG00000125772.14	ENST00000379019.7:ENST00000481038.5:ENST00000418646.5:ENST00000633552.1:ENST00000473797.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	76	2	2.31113	2.36117	2.41121	0.0110342	0.00258657	0.0873897	0.0469354
chr8	102358272	102358372	4012207	0	-	0.38	(0.378,0.408]	chr8	367218	108	INTRON	INTRON	UBR5	ENSG00000104517.13	ENST00000520539.6:ENST00000220959.8:ENST00000521922.5	protein_coding	protein_coding	protein_coding	protein_coding	5	59	2	1.39189	2.361075	3.33026	0.0751636	0.00189824	0.193731	0.0402736
chr14	21472890	21472989	5836451	0	-	0.545455	(0.515,0.57]	chr14	554804	38	INTRON	INTRON	RAB2B	ENSG00000129472.15	ENST00000397762.6:ENST00000649801.1:ENST00000417141.5:ENST00000461909.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	35	2	2.11313	2.36106	2.60899	0.0256725	0.0232669	0.133676	0.118148
chr3	195673417	195673517	1593589	0	+	0.57	(0.515,0.57]	chr3	165051	2	SS3_PROX	SS3_PROX:INTRON	MUC20-OT1	ENSG00000242086.8	ENST00000429897.5:ENST00000445430.5:ENST00000446521.1	lncRNA	lncRNA	lncRNA	lncRNA	3	35	2	2.11313	2.36106	2.60899	0.0256725	0.0232669	0.133676	0.118148
chr20	5571828	5571927	7311941	0	-	0.414141	(0.408,0.44]	chr20	744561	12	INTRON	INTRON	GPCPD1	ENSG00000125772.14	ENST00000379019.7:ENST00000481038.5:ENST00000418646.5:ENST00000633552.1:ENST00000473797.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	107	2	2.04611	2.361025	2.67594	0.016628	1.93157e-4	0.102621	0.012131
chr2	84977443	84977543	820326	0	+	0.57	(0.515,0.57]	chr2	91419	48	INTRON	INTRON	KCMF1	ENSG00000176407.18	ENST00000456682.1:ENST00000409785.9:ENST00000428691.5:ENST00000453448.1	protein_coding	protein_coding	protein_coding	protein_coding	5	50	2	2.03368	2.361005	2.68833	0.0184931	0.00803127	0.108861	0.0803474
chr13	59956251	59956351	5602277	0	-	0.55	(0.515,0.57]	chr13	535449	310	INTRON	INTRON	DIAPH3	ENSG00000139734.19	ENST00000400324.9:ENST00000377908.6:ENST00000400319.5:ENST00000400320.5:ENST00000267215.8:ENST00000465066.5:ENST00000498416.2	protein_coding	protein_coding	protein_coding	protein_coding	3	35	2	2.03361	2.36097	2.68833	0.0325854	0.0184931	0.145164	0.108861
chr17	19917843	19917942	6741477	0	-	0.535354	(0.515,0.57]	chr17	661869	75	INTRON	INTRON	AKAP10	ENSG00000108599.15	ENST00000225737.11:ENST00000578898.1:ENST00000395536.7:ENST00000583951.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	35	2	2.03361	2.36097	2.68833	0.0325854	0.0184931	0.145164	0.108861
chr2	42574064	42574163	760957	0	+	0.535354	(0.515,0.57]	chr2	86284	32	INTRON	INTRON	MTA3	ENSG00000057935.14	ENST00000405592.5:ENST00000406652.5:ENST00000484780.5:ENST00000461256.5:ENST00000407270.7:ENST00000405094.2:ENST00000406911.5:ENST00000454356.5:ENST00000409019.5:ENST00000430763.5:ENST00000433553.5:ENST00000493983.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	35	2	2.03361	2.36097	2.68833	0.0325854	0.0184931	0.145164	0.108861
chr3	33393012	33393111	1651220	0	-	0.555556	(0.515,0.57]	chr3	169323	5	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	UBP1	ENSG00000153560.12	ENST00000283629.8:ENST00000492136.1:ENST00000447368.6:ENST00000466441.5:ENST00000283628.9:ENST00000486388.5:ENST00000464787.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	35	2	2.03361	2.36097	2.68833	0.0325854	0.0184931	0.145164	0.108861
chr1	12605485	12605584	379419	0	-	0.353535	(0.35,0.378]	chr1	44547	93	INTRON	INTRON	DHRS3	ENSG00000162496.9	ENST00000616661.5:ENST00000464917.5:ENST00000482265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	33	2	2.32443	2.360945	2.39746	0.0544216	0.041314	0.164972	0.161534
chr1	35968956	35969055	71524	0	+	0.353535	(0.35,0.378]	chr1	9144	15	INTRON	INTRON	AGO3	ENSG00000126070.20	ENST00000324350.9:ENST00000397828.3:ENST00000634486.1:ENST00000373191.9:ENST00000246314.10:ENST00000491443.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	33	2	2.32443	2.360945	2.39746	0.0544216	0.041314	0.164972	0.161534
chr1	246285819	246285919	678493	0	-	0.36	(0.35,0.378]	chr1	79733	922	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000453676.5:ENST00000462422.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	33	2	2.32443	2.360945	2.39746	0.0544216	0.041314	0.164972	0.161534
chr10	22679642	22679742	4580153	0	-	0.37	(0.35,0.378]	chr10	422040	174	INTRON	INTRON	PIP4K2A	ENSG00000150867.14	ENST00000376573.9:ENST00000545335.5:ENST00000605011.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	33	2	2.32443	2.360945	2.39746	0.0544216	0.041314	0.164972	0.161534
chr10	87092695	87092795	4659823	0	-	0.36	(0.35,0.378]	chr10	429392	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	GLUD1	ENSG00000148672.10	ENST00000277865.5:ENST00000682396.1:ENST00000683022.1:ENST00000683269.1:ENST00000683256.1:ENST00000684032.1:ENST00000684338.1:ENST00000684201.1:ENST00000682507.1:ENST00000683783.1:ENST00000681988.1:ENST00000682622.1:ENST00000684546.1:ENST00000684372.1:ENST00000682833.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	33	2	2.32443	2.360945	2.39746	0.0544216	0.041314	0.164972	0.161534
chr7	127775289	127775389	3403643	0	+	0.37	(0.35,0.378]	chr7	318134	535	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000468166.5:ENST00000465900.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	33	2	2.32443	2.360945	2.39746	0.0544216	0.041314	0.164972	0.161534
chr7	135948798	135948898	3649184	0	-	0.37	(0.35,0.378]	chr7	339202	184	INTRON	INTRON	MTPN	ENSG00000105887.11	ENST00000393085.4:ENST00000435723.1	protein_coding	protein_coding	protein_coding	protein_coding	2	33	2	2.32443	2.360945	2.39746	0.0544216	0.041314	0.164972	0.161534
chr7	44829354	44829452	3528490	0	-	0.489796	(0.476,0.515]	chr7	329097	27	UTR3	UTR3:EXON_MRNA	H2AZ2	ENSG00000105968.19	ENST00000222690.10	protein_coding	protein_coding	protein_coding	protein_coding	22	271	2	2.17334	2.360655	2.54797	3.61616e-4	9.1785e-5	0.0176126	0.00801007
chr16	85480797	85480897	6414638	0	+	0.59	(0.57,1]	chr16	615465	1215	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	6	41	2	2.24116	2.360545	2.47993	0.007207	0.00307807	0.0756278	0.0496321
chr15	38321540	38321640	5999040	0	+	0.3	(0.28,0.32]	chr15	570212	216	INTRON	INTRON	SPRED1	ENSG00000166068.13	ENST00000299084.9:ENST00000561205.1:ENST00000561317.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	38	2	2.2609	2.36054	2.46018	0.0671429	0.0375904	0.183051	0.156054
chr2	101265047	101265147	835989	0	+	0.29	(0.28,0.32]	chr2	93870	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	CNOT11	ENSG00000158435.8	ENST00000289382.8:ENST00000462489.1:ENST00000420107.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	38	2	2.2609	2.36054	2.46018	0.0671429	0.0375904	0.183051	0.156054
chr7	149262857	149262956	3445825	0	+	0.282828	(0.28,0.32]	chr7	321444	1	INTRON	INTRON	ZNF783	ENSG00000204946.10	ENST00000378052.5:ENST00000434415.6:ENST00000476295.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	38	2	2.2609	2.36054	2.46018	0.0671429	0.0375904	0.183051	0.156054
chr21	22283005	22283105	7385198	0	+	0.34	(0.32,0.35]	chr21	752727	698	INTRON	INTRON	ENSG00000226043	ENSG00000226043.2	ENST00000667099.1:ENST00000654607.1:ENST00000444130.1	lncRNA	lncRNA	lncRNA	lncRNA	10	148	2	2.17797	2.360425	2.54288	0.00198095	0.00151636	0.0411469	0.0352794
chr2	85645274	85645313	822316	0	+	0.358974	(0.35,0.378]	chr2	91704	1	SS5_PROX	SS5_PROX:INTRON	USP39	ENSG00000168883.20	ENST00000459775.5:ENST00000450066.6:ENST00000613444.4:ENST00000409025.5:ENST00000409470.5:ENST00000323701.11:ENST00000409766.7:ENST00000490193.5:ENST00000496047.5:ENST00000465514.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	54	2	1.6122	2.3604149999999997	3.10863	0.0616849	0.00470896	0.174021	0.0631419
chr4	524823	524911	1907620	0	+	0.522727	(0.515,0.57]	chr4	191158	4	EXON_LNCRNA	EXON_LNCRNA:INTRON	PIGG	ENSG00000174227.16	ENST00000453061.7:ENST00000310340.9:ENST00000504346.5:ENST00000383028.8:ENST00000508562.1:ENST00000511247.1:ENST00000508669.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	90	2	2.20043	2.3604149999999997	2.5204	0.00392045	9.8022e-4	0.0570863	0.0285591
chr16	89412663	89412763	6542816	0	-	0.31	(0.28,0.32]	chr16	634259	1	SS3_PROX	SS3_PROX:INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000647238.1:ENST00000644045.1:ENST00000643147.1:ENST00000644139.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	14	221	2	2.35294	2.360375	2.36781	0.00225787	3.54521e-4	0.0425438	0.0168579
chr2	96890240	96890339	1182127	0	-	0.414141	(0.408,0.44]	chr2	126720	114	INTRON	INTRON	FAM178B	ENSG00000168754.15	ENST00000393526.6:ENST00000490605.3:ENST00000470789.5:ENST00000494172.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	11	143	2	2.24467	2.36036	2.47605	0.00116417	0.00116316	0.0314524	0.0312127
chr13	32535091	32535187	5572819	0	-	0.34375	(0.32,0.35]	chr13	532574	17	EXON_MRNA	EXON_MRNA:INTRON	N4BP2L2	ENSG00000244754.9	ENST00000357505.10:ENST00000399396.7:ENST00000504114.5:ENST00000446957.6:ENST00000674456.1:ENST00000674161.1:ENST00000674422.1:ENST00000674272.1:ENST00000674452.1:ENST00000674384.1:ENST00000505213.5:ENST00000674219.1:ENST00000267068.5:ENST00000674349.1:ENST00000674428.1:ENST00000674465.1:ENST00000674421.1:ENST00000674180.1:ENST00000674297.1:ENST00000674480.1:ENST00000674377.1:ENST00000674437.1:ENST00000674327.1:ENST00000674399.1:ENST00000674196.1:ENST00000674163.1:ENST00000511143.5:ENST00000674484.1:ENST00000475731.1:ENST00000674433.1:ENST00000674408.1:ENST00000674494.1:ENST00000512755.2:ENST00000674276.1:ENST00000674369.1:ENST00000674462.1:ENST00000483088.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	57	2	1.97654	2.3603449999999997	2.74415	0.0199113	0.0198267	0.120668	0.109608
chr10	63425735	63425835	4634989	0	-	0.37	(0.35,0.378]	chr10	426236	449	INTRON	INTRON	JMJD1C	ENSG00000171988.20	ENST00000399262.7:ENST00000633035.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	99	2	2.35402	2.36034	2.36666	0.00596483	0.00212276	0.0674604	0.0426185
chr3	172264135	172264235	1561802	0	+	0.44	(0.408,0.44]	chr3	161582	122	INTRON	INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000469491.5:ENST00000336824.8:ENST00000416957.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	67	2	2.03431	2.360265	2.68622	0.0154896	0.00418848	0.108998	0.0572071
chr4	165342882	165342976	2079791	0	+	0.223404	[0,0.28]	chr4	205593	11	UTR3	UTR3:EXON_MRNA	MSMO1	ENSG00000052802.13	ENST00000261507.11:ENST00000393766.6	protein_coding	protein_coding	protein_coding	protein_coding	22	403	2	2.21933	2.36022	2.50111	5.6958e-4	4.94459e-4	0.0220524	0.0201485
chr1	155546277	155546377	562731	0	-	0.41	(0.408,0.44]	chr1	67117	243	INTRON	INTRON	ASH1L	ENSG00000116539.14	ENST00000676814.1:ENST00000392403.8:ENST00000368346.7:ENST00000677213.1:ENST00000678117.1:ENST00000679097.1:ENST00000679333.1:ENST00000679133.1:ENST00000548830.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	76	2	2.22819	2.360185	2.49218	0.00855168	0.00373083	0.0780217	0.0561984
chr11	46592755	46592851	4947248	0	-	0.416667	(0.408,0.44]	chr11	463529	15	INTRON	INTRON	AMBRA1	ENSG00000110497.15	ENST00000683756.1:ENST00000534300.5:ENST00000533727.5:ENST00000528950.1:ENST00000531542.1:ENST00000526606.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	76	2	2.22819	2.360185	2.49218	0.00855168	0.00373083	0.0780217	0.0561984
chr22	19093283	19093383	7551723	0	-	0.47	(0.44,0.476]	chr22	771903	34	INTRON	INTRON	DGCR2	ENSG00000070413.20	ENST00000537045.5:ENST00000545799.5:ENST00000263196.12:ENST00000389262.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	79	2	2.2193	2.360175	2.50105	0.00896114	0.00240161	0.0800073	0.0452061
chr5	179826120	179826219	2561710	0	+	0.484848	(0.476,0.515]	chr5	245049	5	INTRON	INTRON	SQSTM1	ENSG00000161011.20	ENST00000389805.9:ENST00000510187.5:ENST00000360718.5:ENST00000466342.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	17	142	2	1.19382	2.360135	3.52645	0.0301646	8.15975e-5	0.142601	0.00810741
chr2	97521828	97521927	1183541	0	-	0.373737	(0.35,0.378]	chr2	126902	55	INTRON	INTRON	ANKRD36B	ENSG00000196912.13	ENST00000359901.9:ENST00000258459.12	protein_coding	protein_coding	protein_coding	protein_coding	3	45	2	2.32443	2.36013	2.39583	0.0544216	0.0107976	0.164972	0.0920575
chr8	70583721	70583793	3966945	0	-	0.375	(0.35,0.378]	chr8	363918	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TRAM1	ENSG00000067167.8	ENST00000262213.7:ENST00000521425.5:ENST00000521049.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	45	2	2.32443	2.36013	2.39583	0.0544216	0.0107976	0.164972	0.0920575
chr7	92449513	92449613	3354398	0	+	0.34	(0.32,0.35]	chr7	312622	3	SS5_PROX	SS5_PROX:INTRON	GATAD1	ENSG00000157259.8	ENST00000287957.5:ENST00000645746.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	57	2	1.72898	2.360115	2.99125	0.0425433	0.00958447	0.161951	0.0820838
chr14	55047912	55048010	5725353	0	+	0.5	(0.476,0.515]	chr14	543368	37	UTR3	UTR3:EXON_MRNA	SOCS4	ENSG00000180008.9	ENST00000395472.2:ENST00000555846.2:ENST00000339298.2	protein_coding	protein_coding	protein_coding	protein_coding	6	75	2	1.91368	2.360095	2.80651	0.0135123	0.00250121	0.101363	0.0446195
chr18	21742212	21742312	6879746	0	+	0.43	(0.408,0.44]	chr18	681867	4	SS5_PROX	SS5_PROX:INTRON	MIB1	ENSG00000101752.13	ENST00000578646.5:ENST00000261537.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	81	2	2.26617	2.36006	2.45395	0.00649402	0.00366321	0.0734343	0.0535094
chr2	180995741	180995841	936123	0	+	0.32	(0.28,0.32]	chr2	102627	58	INTRON	INTRON	UBE2E3	ENSG00000170035.16	ENST00000602303.5:ENST00000602959.5:ENST00000602479.5:ENST00000392415.6:ENST00000602291.5:ENST00000410062.9:ENST00000602499.5:ENST00000602710.5:ENST00000602762.5:ENST00000602888.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	96	2	2.09198	2.3600149999999998	2.62805	0.00780964	0.00681001	0.0788246	0.0711884
chr5	178133669	178133769	2559201	0	+	0.52	(0.515,0.57]	chr5	244573	1	SS5_PROX	SS5_PROX:INTRON	RMND5B	ENSG00000145916.19	ENST00000515098.5:ENST00000507575.5:ENST00000313386.9:ENST00000502814.5:ENST00000512663.5:ENST00000507457.5:ENST00000508647.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	50	2	1.73313	2.35995	2.98677	0.0258496	0.00632549	0.121322	0.0722266
chr6	131661205	131661305	2960427	0	+	0.34	(0.32,0.35]	chr6	278298	24	INTRON	INTRON	ENPP3	ENSG00000154269.15	ENST00000427707.5:ENST00000414305.5:ENST00000357639.8:ENST00000358229.6:ENST00000470930.5:ENST00000494023.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	64	2	2.09005	2.359875	2.6297	0.0330483	0.00476699	0.133816	0.0636201
chr2	55049644	55049744	1121404	0	-	0.7	(0.57,1]	chr2	120175	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	RTN4	ENSG00000115310.19	ENST00000404909.5:ENST00000394611.6:ENST00000317610.11:ENST00000357732.8:ENST00000337526.11:ENST00000427710.5	protein_coding	protein_coding	protein_coding	protein_coding	5	38	2	1.9042	2.359845	2.81549	0.0476976	3.90081e-4	0.153019	0.0177751
chrX	41335402	41335499	7645656	0	+	0.474227	(0.44,0.476]	chrX	782485	3	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	DDX3X	ENSG00000215301.11	ENST00000625837.2:ENST00000626301.2:ENST00000629785.2:ENST00000630255.2:ENST00000630370.2:ENST00000630858.2:ENST00000629496.3:ENST00000610559.5:ENST00000611546.2:ENST00000478993.5:ENST00000457138.7:ENST00000643821.1:ENST00000644876.2:ENST00000399959.7:ENST00000644074.1:ENST00000645338.1:ENST00000646196.1:ENST00000642793.1:ENST00000646940.1:ENST00000644307.1:ENST00000645561.1:ENST00000645080.1:ENST00000642597.1:ENST00000642722.1:ENST00000644109.1:ENST00000644958.1:ENST00000646122.1:ENST00000644513.1:ENST00000645589.1:ENST00000441189.4:ENST00000646822.1:ENST00000631641.2:ENST00000615742.4:ENST00000647219.1:ENST00000480592.6:ENST00000646223.1:ENST00000643963.1:ENST00000646319.1:ENST00000645783.1:ENST00000642624.1:ENST00000542215.5:ENST00000644073.1:ENST00000644677.1:ENST00000615313.5:ENST00000622373.1:ENST00000642322.1:ENST00000622198.5:ENST00000645120.1:ENST00000646107.1:ENST00000646627.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	66	2	1.63371	2.35981	3.08591	0.0271664	0.00481262	0.123904	0.0638089
chr1	45639809	45639909	440108	0	-	0.45	(0.44,0.476]	chr1	53320	2	SS5_PROX	SS5_PROX:INTRON	GPBP1L1	ENSG00000159592.11	ENST00000290795.7:ENST00000355105.8	protein_coding	protein_coding	protein_coding	protein_coding	8	91	2	1.80702	2.35977	2.91252	0.00924948	0.00164027	0.0855292	0.0369207
chr3	196063224	196063324	1897352	0	-	0.38	(0.378,0.408]	chr3	189927	1	EXON_LNCRNA	EXON_LNCRNA:SS3_PROX:INTRON	TFRC	ENSG00000072274.13	ENST00000420415.5:ENST00000360110.9:ENST00000392396.7:ENST00000465288.5:ENST00000464368.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	56	682	2	2.26675	2.359615	2.45248	5.57892e-5	2.00378e-5	0.00653655	0.00346593
chr3	73015483	73015562	1452142	0	+	0.506329	(0.476,0.515]	chr3	152958	1	SS3_PROX	SS3_PROX:INTRON	PPP4R2	ENSG00000163605.15	ENST00000482242.5:ENST00000356692.10:ENST00000470976.1:ENST00000488810.5:ENST00000495566.1:ENST00000476505.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	90	2	2.06011	2.35961	2.65911	0.00869033	0.00116074	0.0788605	0.0314098
chr6	37852199	37852299	2857357	0	+	0.48	(0.476,0.515]	chr6	270225	318	INTRON	INTRON	ZFAND3	ENSG00000156639.12	ENST00000287218.9:ENST00000373391.6:ENST00000474522.5	protein_coding	protein_coding	protein_coding	protein_coding	4	49	2	2.01953	2.3596	2.69967	0.0195838	0.0163662	0.109586	0.109483
chr1	23054595	23054689	44114	0	+	0.382979	(0.378,0.408]	chr1	5276	9	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	KDM1A	ENSG00000004487.18	ENST00000692214.1:ENST00000686934.1:ENST00000689853.1:ENST00000465864.2:ENST00000691256.1:ENST00000688122.1:ENST00000692056.1:ENST00000692853.1:ENST00000689366.1:ENST00000686270.1:ENST00000685102.1:ENST00000690627.1:ENST00000686771.1:ENST00000692209.1:ENST00000686339.1:ENST00000691813.1:ENST00000693156.1:ENST00000688235.1:ENST00000692975.1:ENST00000687202.1:ENST00000691682.1:ENST00000691404.1:ENST00000691694.1:ENST00000688680.1:ENST00000356634.7:ENST00000400181.9:ENST00000481879.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	99	2	1.39899	2.359575	3.32016	0.0190529	0.00268328	0.119044	0.0464781
chr10	68428348	68428447	4639319	0	-	0.353535	(0.35,0.378]	chr10	426660	51	INTRON	INTRON	DNA2	ENSG00000138346.15	ENST00000358410.8:ENST00000551118.6:ENST00000399179.6:ENST00000399180.3:ENST00000440722.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	45	2	1.82887	2.35945	2.89003	0.0584878	0.0122391	0.189395	0.0910127
chr5	10261745	10261836	2317591	0	+	0.373626	(0.35,0.378]	chr5	224588	1	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	CCT5	ENSG00000150753.12	ENST00000503026.5:ENST00000515390.5:ENST00000280326.9:ENST00000423695.6:ENST00000515676.5:ENST00000506600.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	45	2	1.82887	2.35945	2.89003	0.0584878	0.0122391	0.189395	0.0910127
chr1	235300328	235300428	663584	0	-	0.5	(0.476,0.515]	chr1	78552	392	INTRON	INTRON	ARID4B	ENSG00000054267.22	ENST00000349213.7:ENST00000366603.6:ENST00000264183.9:ENST00000421364.5:ENST00000491632.5:ENST00000418304.1:ENST00000466653.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	42	2	2.23335	2.35943	2.48551	0.0634557	0.00756632	0.177047	0.0773151
chr6	119343065	119343165	3205749	0	-	0.29	(0.28,0.32]	chr6	298328	357	INTRON	INTRON	MAN1A1	ENSG00000111885.7	ENST00000368468.4	protein_coding	protein_coding	protein_coding	protein_coding	5	84	2	2.33381	2.359425	2.38504	0.0174951	0.00475871	0.104863	0.0636201
chr1	55104420	55104520	464739	0	-	0.29	(0.28,0.32]	chr1	56066	4	SS3_PROX	SS3_PROX:INTRON	USP24	ENSG00000162402.14	ENST00000294383.7	protein_coding	protein_coding	protein_coding	protein_coding	4	62	2	1.98806	2.3594150000000003	2.73077	0.0220748	0.0199553	0.120668	0.115395
chr1	168248129	168248229	250386	0	+	0.35	(0.32,0.35]	chr1	29769	57	UTR3	UTR3:EXON_MRNA	SFT2D2	ENSG00000213064.10	ENST00000271375.7	protein_coding	protein_coding	protein_coding	protein_coding	2	35	2	2.23182	2.359375	2.48693	0.068598	0.0338094	0.184298	0.146709
chr11	108219614	108219714	5035158	0	-	0.33	(0.32,0.35]	chr11	474469	107	INTRON	INTRON	NPAT	ENSG00000149308.17	ENST00000278612.9:ENST00000610253.5:ENST00000531384.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	35	2	2.23182	2.359375	2.48693	0.068598	0.0338094	0.184298	0.146709
chr15	28631337	28631437	5988334	0	+	0.35	(0.32,0.35]	chr15	569276	15	INTRON	INTRON	HERC2P9	ENSG00000206149.11	ENST00000689985.1:ENST00000688694.1:ENST00000529537.2:ENST00000529624.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	2	35	2	2.23182	2.359375	2.48693	0.068598	0.0338094	0.184298	0.146709
chr19	45110417	45110517	7079211	0	+	0.34	(0.32,0.35]	chr19	708078	16	INTRON	INTRON	PPP1R37	ENSG00000104866.11	ENST00000544069.2:ENST00000221462.9:ENST00000544897.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	35	2	2.23182	2.359375	2.48693	0.068598	0.0338094	0.184298	0.146709
chr5	115841202	115841291	2707932	0	-	0.337079	(0.32,0.35]	chr5	254830	4	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ATG12	ENSG00000145782.13	ENST00000509910.2:ENST00000500945.2:ENST00000513322.5:ENST00000379594.7:ENST00000505993.5:ENST00000513167.1:ENST00000514775.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	35	2	2.23182	2.359375	2.48693	0.068598	0.0338094	0.184298	0.146709
chr5	140276764	140276863	2737288	0	-	0.323232	(0.32,0.35]	chr5	257797	139	INTRON	INTRON	PFDN1	ENSG00000113068.10	ENST00000261813.9:ENST00000514611.1:ENST00000510217.1:ENST00000512707.1:ENST00000524074.1:ENST00000512925.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	35	2	2.23182	2.359375	2.48693	0.068598	0.0338094	0.184298	0.146709
chr8	54020230	54020329	3953288	0	-	0.343434	(0.32,0.35]	chr8	362572	94	INTRON	INTRON	TCEA1	ENSG00000187735.15	ENST00000396401.7:ENST00000521604.7:ENST00000521086.6:ENST00000522635.5:ENST00000522397.5:ENST00000640382.1:ENST00000640041.1:ENST00000520534.5:ENST00000518310.5:ENST00000517351.5:ENST00000521836.1:ENST00000518784.5:ENST00000519704.1:ENST00000638322.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	35	2	2.23182	2.359375	2.48693	0.068598	0.0338094	0.184298	0.146709
chr9	77987326	77987426	4271503	0	-	0.35	(0.32,0.35]	chr9	392880	646	INTRON	INTRON	GNAQ	ENSG00000156052.11	ENST00000286548.9:ENST00000411677.1	protein_coding	protein_coding	protein_coding	protein_coding	2	35	2	2.23182	2.359375	2.48693	0.068598	0.0338094	0.184298	0.146709
chr18	9347814	9347914	6870574	0	+	0.37	(0.35,0.378]	chr18	680666	101	INTRON	INTRON	TWSG1	ENSG00000128791.12	ENST00000583147.5:ENST00000262120.10:ENST00000581641.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	66	2	2.24809	2.35937	2.47065	0.0386172	0.00361961	0.142656	0.0554656
chr7	92566461	92566561	3570676	0	-	0.42	(0.408,0.44]	chr7	332713	4	SS3_PROX	SS3_PROX:INTRON	FAM133B	ENSG00000234545.8	ENST00000445716.6:ENST00000438306.5:ENST00000415397.6:ENST00000481407.5:ENST00000427372.5:ENST00000494079.1:ENST00000468931.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	136	2	2.17483	2.35934	2.54385	0.00115078	0.00114553	0.0313145	0.0308287
chr16	89404359	89404459	6542732	0	-	0.36	(0.35,0.378]	chr16	634254	2	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000647238.1:ENST00000644045.1:ENST00000643147.1:ENST00000644139.1:ENST00000568512.6:ENST00000566973.1:ENST00000562211.2:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	76	2	1.72813	2.359285	2.99044	0.0132675	0.00894806	0.100167	0.0799922
chr18	32109512	32109608	6887436	0	+	0.447917	(0.44,0.476]	chr18	682659	1	INTRON	INTRON	RNF138	ENSG00000134758.14	ENST00000261593.8:ENST00000585103.5:ENST00000578914.1:ENST00000578107.5:ENST00000583733.1:ENST00000257190.9:ENST00000580499.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	55	2	2.02558	2.3592750000000002	2.69297	0.0363567	0.00333494	0.138959	0.0528877
chr2	177251629	177251729	1275716	0	-	0.45	(0.44,0.476]	chr2	134708	170	INTRON	INTRON	NFE2L2	ENSG00000116044.16	ENST00000397063.8:ENST00000464747.5:ENST00000397062.8:ENST00000446151.6:ENST00000449627.1:ENST00000448782.5:ENST00000430047.1:ENST00000586532.5:ENST00000421929.5:ENST00000423513.5:ENST00000588123.1:ENST00000477534.1:ENST00000462023.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	55	2	2.02558	2.3592750000000002	2.69297	0.0363567	0.00333494	0.138959	0.0528877
chrX	46521341	46521440	7813873	0	-	0.464646	(0.44,0.476]	chrX	796369	197	INTRON	INTRON	ZNF674	ENSG00000251192.8	ENST00000683375.1:ENST00000523374.5:ENST00000414387.6:ENST00000518795.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	55	2	2.02558	2.3592750000000002	2.69297	0.0363567	0.00333494	0.138959	0.0528877
chr16	87393719	87393819	6416827	0	+	0.46	(0.44,0.476]	chr16	615617	4	SS5_PROX	SS5_PROX:INTRON	MAP1LC3B	ENSG00000140941.14	ENST00000650688.1:ENST00000570189.5:ENST00000565788.1:ENST00000268607.10:ENST00000564844.1:ENST00000564638.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	129	2	1.89689	2.35927	2.82165	0.00630125	2.79119e-4	0.0722266	0.0153455
chr1	120618055	120618155	535921	0	-	0.47	(0.44,0.476]	chr1	63034	385	INTRON	INTRON	PDE4DIPP2	ENSG00000275131.3	ENST00000612480.2	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	6	79	2	2.2543	2.35926	2.46422	0.00787184	0.00282908	0.076155	0.0491595
chr6	131667169	131667268	2960487	0	+	0.494949	(0.476,0.515]	chr6	278298	84	INTRON	INTRON	ENPP3	ENSG00000154269.15	ENST00000427707.5:ENST00000414305.5:ENST00000357639.8:ENST00000358229.6:ENST00000470930.5:ENST00000494023.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	49	2	1.61586	2.3592500000000003	3.10264	0.0567093	0.00543163	0.185107	0.0645052
chr7	157338688	157338782	3455316	0	+	0.457447	(0.44,0.476]	chr7	323048	5	INTRON	INTRON	DNAJB6	ENSG00000105993.15	ENST00000441561.5:ENST00000429029.6:ENST00000262177.9:ENST00000486083.6:ENST00000417758.5:ENST00000459889.5:ENST00000443280.5:ENST00000488001.5:ENST00000441291.5:ENST00000437030.5:ENST00000412557.5:ENST00000453383.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	76	2	1.93713	2.35921	2.78129	0.0138947	0.00229634	0.0955491	0.0439319
chr2	156250040	156250139	1248933	0	-	0.494949	(0.476,0.515]	chr2	132433	29	INTRON	INTRON	LINC01876	ENSG00000226383.7	ENST00000635799.1:ENST00000662073.1:ENST00000659502.1:ENST00000428651.2:ENST00000661513.1:ENST00000657334.1:ENST00000638047.1:ENST00000637554.1:ENST00000636956.1:ENST00000637665.1:ENST00000637476.1:ENST00000637324.1	lncRNA	lncRNA	lncRNA	lncRNA	4	50	2	1.83961	2.3592	2.87879	0.0314489	0.00999149	0.13151	0.0879541
chr4	110175965	110176065	2227508	0	-	0.31	(0.28,0.32]	chr4	218024	700	INTRON	INTRON	ELOVL6	ENSG00000170522.10	ENST00000394607.7:ENST00000302274.8:ENST00000514184.5:ENST00000506625.5:ENST00000506461.1:ENST00000503885.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	70	2	2.00989	2.3590999999999998	2.70831	0.0427801	0.00378444	0.148082	0.0562562
chr9	100043730	100043829	4308091	0	-	0.292929	(0.28,0.32]	chr9	395794	170	INTRON	INTRON	ERP44	ENSG00000023318.9	ENST00000262455.7:ENST00000685319.1:ENST00000691188.1:ENST00000687025.1:ENST00000687093.1:ENST00000690739.1:ENST00000687017.1:ENST00000690317.1:ENST00000691823.1:ENST00000686275.1:ENST00000689406.1:ENST00000684842.1:ENST00000688230.1:ENST00000685432.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	70	2	2.00989	2.3590999999999998	2.70831	0.0427801	0.00378444	0.148082	0.0562562
chr1	28890192	28890291	58710	0	+	0.474747	(0.44,0.476]	chr1	7613	26	INTRON	INTRON	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000647918.1:ENST00000646800.1:ENST00000644342.1:ENST00000646189.1:ENST00000482464.6:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	13	160	2	2.19987	2.35905	2.51823	7.15015e-4	6.77243e-4	0.0244034	0.0238226
chr1	235407081	235407181	340071	0	+	0.53	(0.515,0.57]	chr1	39557	51	INTRON	INTRON	TBCE	ENSG00000285053.1:ENSG00000284770.2	ENST00000644055.1:ENST00000645655.1:ENST00000647428.1:ENST00000643418.1:ENST00000646624.1:ENST00000647186.1:ENST00000646528.1:ENST00000645351.1:ENST00000643410.1:ENST00000645205.1:ENST00000645836.1:ENST00000642503.1:ENST00000646281.1:ENST00000645069.1:ENST00000644680.1:ENST00000645578.1:ENST00000642431.1:ENST00000644604.1:ENST00000651186.1:ENST00000643125.1:ENST00000406207.5:ENST00000642463.1:ENST00000645899.1:ENST00000647233.1:ENST00000642926.1:ENST00000644578.1:ENST00000647418.1:ENST00000645372.1:ENST00000645582.1:ENST00000643994.1:ENST00000647407.1:ENST00000642610.2:ENST00000644037.1:ENST00000646463.1:ENST00000366601.8:ENST00000643524.1:ENST00000646536.1:ENST00000643142.1:ENST00000644838.1:ENST00000646286.1:ENST00000646186.1:ENST00000643615.1:ENST00000543662.4:ENST00000646848.1:ENST00000647332.1:ENST00000647489.1:ENST00000644625.1:ENST00000646384.1:ENST00000645551.1:ENST00000646821.1:ENST00000472011.6:ENST00000643238.1:ENST00000646104.1:ENST00000645662.1:ENST00000643993.1:ENST00000645964.1:ENST00000642339.1:ENST00000644217.1:ENST00000642372.1:ENST00000646929.1:ENST00000644265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	44	2	1.97035	2.359035	2.74772	0.0195832	0.0142192	0.109483	0.103638
chr21	38067063	38067163	7463552	0	-	0.35	(0.32,0.35]	chr21	760281	119	INTRON	INTRON	DSCR4	ENSG00000184029.9	ENST00000398948.5:ENST00000328264.7	lncRNA	lncRNA	lncRNA	lncRNA	10	139	2	2.06505	2.3589700000000002	2.65289	0.00239294	0.00199729	0.0450861	0.0406642
chr2	43896901	43896997	1109568	0	-	0.333333	(0.32,0.35]	chr2	118950	3	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	LRPPRC	ENSG00000138095.20	ENST00000260665.12:ENST00000682612.1:ENST00000684454.1:ENST00000682308.1:ENST00000683459.1:ENST00000683623.1:ENST00000683002.1:ENST00000683125.1:ENST00000683994.1:ENST00000684619.1:ENST00000683833.1:ENST00000682546.1:ENST00000683080.1:ENST00000681993.1:ENST00000682585.1:ENST00000683220.1:ENST00000683796.1:ENST00000682607.1:ENST00000683590.1:ENST00000684306.1:ENST00000683213.1:ENST00000683409.1:ENST00000684418.1:ENST00000682779.1:ENST00000684433.1:ENST00000682885.1:ENST00000419884.6:ENST00000684743.1:ENST00000463456.5:ENST00000683346.1:ENST00000683072.1:ENST00000682303.1:ENST00000683329.1:ENST00000683096.1:ENST00000682933.1:ENST00000684383.1:ENST00000682480.1:ENST00000684290.1:ENST00000682434.1:ENST00000472420.6:ENST00000684341.1:ENST00000682595.1:ENST00000483489.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	78	2	1.69107	2.358965	3.02686	0.0517392	8.86699e-4	0.159306	0.0271952
chr2	241681318	241681418	1349381	0	-	0.44	(0.408,0.44]	chr2	141799	6	INTRON	INTRON	DTYMK	ENSG00000168393.13	ENST00000400770.6:ENST00000305784.7:ENST00000445261.5:ENST00000432348.5:ENST00000420144.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	50	2	2.13157	2.358905	2.58624	0.0273686	0.0109031	0.123904	0.0923273
chr17	75170981	75171080	6836259	0	-	0.363636	(0.35,0.378]	chr17	675501	22	INTRON	INTRON	SUMO2	ENSG00000188612.12	ENST00000420826.7:ENST00000314523.7:ENST00000578238.2	protein_coding	protein_coding	protein_coding	protein_coding	4	61	2	1.87717	2.35887	2.84057	0.0555068	0.00189462	0.165463	0.0402736
chr2	65122895	65122995	1142890	0	-	0.46	(0.44,0.476]	chr2	122186	177	INTRON	INTRON	RAB1A	ENSG00000138069.18	ENST00000649427.1:ENST00000494188.1:ENST00000409784.8:ENST00000409892.5:ENST00000409751.1:ENST00000398529.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	10	118	2	2.02036	2.358855	2.69735	0.0025344	0.00125459	0.0465056	0.0323608
chr12	76079035	76079135	5370169	0	-	0.35	(0.32,0.35]	chr12	512329	44	INTRON	INTRON	NAP1L1	ENSG00000187109.15	ENST00000618691.5:ENST00000393263.7:ENST00000431879.7:ENST00000547773.5:ENST00000544816.5:ENST00000542344.5:ENST00000535020.6:ENST00000549596.5:ENST00000552342.5:ENST00000548044.5:ENST00000550934.5:ENST00000551992.5:ENST00000548273.5:ENST00000551600.5:ENST00000547704.5:ENST00000549988.5:ENST00000547479.5:ENST00000549479.1:ENST00000551500.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	88	2	2.15243	2.358815	2.5652	0.00765724	0.0057293	0.075364	0.0681402
chr12	121310610	121310710	5436746	0	-	0.51	(0.476,0.515]	chr12	519847	2	INTRON	INTRON	ANAPC5	ENSG00000089053.13	ENST00000261819.8:ENST00000535641.5:ENST00000541887.5:ENST00000534976.5:ENST00000441917.6:ENST00000539079.5:ENST00000544314.5:ENST00000535482.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	75	2	1.82595	2.3588	2.89165	0.0202339	0.00142068	0.109955	0.034662
chr7	100016126	100016226	3363094	0	+	0.55	(0.515,0.57]	chr7	314209	4	SS5_PROX	SS5_PROX:INTRON	ZKSCAN1	ENSG00000106261.17	ENST00000535170.5:ENST00000324306.11:ENST00000426572.5:ENST00000482979.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	42	2	1.88259	2.3588	2.83501	0.0251849	0.0117686	0.133519	0.0894475
chr7	127670246	127670346	3402572	0	+	0.46	(0.44,0.476]	chr7	318063	174	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000463020.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	75	2	2.00793	2.358765	2.7096	0.00937685	0.00376205	0.0859966	0.0539118
chr1	36229953	36230052	72986	0	+	0.464646	(0.44,0.476]	chr1	9371	41	INTRON	INTRON	THRAP3	ENSG00000054118.15	ENST00000469141.6:ENST00000648638.1:ENST00000354618.10	protein_coding	protein_coding	protein_coding	protein_coding	14	177	2	2.31511	2.35873	2.40235	7.90141e-4	3.2631e-4	0.0259642	0.0160737
chr1	45611618	45611715	93488	0	+	0.505155	(0.476,0.515]	chr1	12614	12	EXON_MRNA	EXON_MRNA:INTRON	NASP	ENSG00000132780.17	ENST00000437901.6:ENST00000537798.5:ENST00000437362.6:ENST00000350030.8:ENST00000527359.5:ENST00000453748.5:ENST00000525515.5:ENST00000528238.5:ENST00000372052.8:ENST00000351223.7:ENST00000530073.5:ENST00000481782.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	106	2	1.50914	2.358675	3.20821	0.0212469	3.05489e-4	0.11322	0.0155972
chr1	203809309	203809409	296817	0	+	0.49	(0.476,0.515]	chr1	34134	59	INTRON	INTRON	ZC3H11A:ZBED6	ENSG00000058673.17:ENSG00000257315.3	ENST00000367210.3:ENST00000453771.5:ENST00000432282.5:ENST00000638800.1:ENST00000367214.5:ENST00000639812.1:ENST00000367212.7:ENST00000332127.8:ENST00000550078.2:ENST00000495527.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	49	2	1.52615	2.35867	3.19119	0.0739267	0.00325748	0.190914	0.0524329
chr1	235488375	235488472	664295	0	-	0.494845	(0.476,0.515]	chr1	78624	33	INTRON	INTRON	B3GALNT2	ENSG00000162885.14	ENST00000366600.8:ENST00000675193.1:ENST00000676288.1:ENST00000675555.1:ENST00000612859.4:ENST00000313984.3:ENST00000494378.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	49	2	1.52615	2.35867	3.19119	0.0739267	0.00325748	0.190914	0.0524329
chr2	188273331	188273431	1295254	0	-	0.53	(0.515,0.57]	chr2	135671	444	INTRON	INTRON	LINC01090	ENSG00000231689.3	ENST00000434418.2:ENST00000632331.1:ENST00000415357.1	lncRNA	lncRNA	lncRNA	lncRNA	4	42	2	1.7492	2.35867	2.96814	0.0382504	0.00756432	0.15832	0.0749063
chr3	38359242	38359341	1399601	0	+	0.535354	(0.515,0.57]	chr3	146783	22	INTRON	INTRON	XYLB	ENSG00000093217.11	ENST00000207870.8:ENST00000650590.1:ENST00000424034.5:ENST00000649234.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	42	2	1.7492	2.35867	2.96814	0.0382504	0.00756432	0.15832	0.0749063
chr7	5390174	5390265	3471743	0	-	0.538462	(0.515,0.57]	chr7	324661	9	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	TNRC18	ENSG00000182095.15	ENST00000399537.8:ENST00000430969.6:ENST00000434361.5:ENST00000399434.2	protein_coding	protein_coding	protein_coding	protein_coding	4	42	2	1.7492	2.35867	2.96814	0.0382504	0.00756432	0.15832	0.0749063
chr5	19069486	19069586	2569760	0	-	0.3	(0.28,0.32]	chr5	246210	308	INTRON	INTRON	ENSG00000249174	ENSG00000249174.1	ENST00000504827.1	lncRNA	lncRNA	lncRNA	lncRNA	4	63	2	2.14534	2.358645	2.57195	0.0331711	0.0117054	0.133994	0.0962115
chr19	5934642	5934732	7125162	0	-	0.477778	(0.476,0.515]	chr19	717341	3	INTRON	INTRON	RANBP3	ENSG00000031823.14	ENST00000340578.10:ENST00000439268.6:ENST00000592771.5:ENST00000591092.5:ENST00000034275.12:ENST00000587479.2:ENST00000592621.5:ENST00000590623.5:ENST00000591736.5:ENST00000590953.5:ENST00000588879.5:ENST00000587159.5:ENST00000586117.5:ENST00000589353.5:ENST00000587463.5:ENST00000588010.5:ENST00000591124.5:ENST00000585339.5:ENST00000592133.5:ENST00000591881.5:ENST00000589886.5:ENST00000587263.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	109	2	1.96786	2.3586400000000003	2.74942	0.00462407	9.59979e-4	0.062717	0.0282401
chr20	58897626	58897720	7291075	0	+	0.425532	(0.408,0.44]	chr20	741831	3	EXON_MRNA	EXON_MRNA:INTRON	GNAS	ENSG00000087460.29	ENST00000313949.11:ENST00000371075.7:ENST00000419558.7:ENST00000371098.6:ENST00000657090.1:ENST00000453292.7:ENST00000306090.12:ENST00000491348.5:ENST00000472183.6:ENST00000462499.6:ENST00000482112.6:ENST00000663479.2:ENST00000493744.5:ENST00000490374.6:ENST00000467227.6:ENST00000676826.2:ENST00000481768.6:ENST00000371100.9:ENST00000371102.8:ENST00000464624.7:ENST00000349036.9:ENST00000423897.7:ENST00000464960.5:ENST00000488546.6:ENST00000667293.2:ENST00000481039.6:ENST00000467321.6:ENST00000477931.5:ENST00000485673.6:ENST00000470512.6:ENST00000464788.6:ENST00000469431.6:ENST00000604005.6:ENST00000478585.6:ENST00000480975.5:ENST00000480232.6:ENST00000484504.5:ENST00000683015.1:ENST00000461152.6:ENST00000371095.7:ENST00000265620.11:ENST00000354359.12:ENST00000371085.8:ENST00000468895.6:ENST00000371081.5:ENST00000338783.7:ENST00000682803.1:ENST00000488652.6:ENST00000476935.6:ENST00000492907.6:ENST00000603546.2:ENST00000684284.1:ENST00000682134.1:ENST00000682829.1:ENST00000483387.2:ENST00000487862.5:ENST00000496934.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	77	2	1.4947	2.35864	3.2225799999999998	0.0566065	2.79412e-4	0.167352	0.0148832
chr19	52649848	52649947	7206722	0	-	0.373737	(0.35,0.378]	chr19	731394	116	INTRON	INTRON	ZNF83	ENSG00000167766.20	ENST00000600714.5:ENST00000601257.5:ENST00000594682.6:ENST00000687234.1:ENST00000598536.5:ENST00000595171.5:ENST00000596440.5:ENST00000602232.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	86	2	1.64283	2.358605	3.07438	0.034896	9.54868e-4	0.148998	0.0282401
chr6	140897787	140897887	3241129	0	-	0.4	(0.378,0.408]	chr6	301068	2	SS5_PROX	SS5_PROX:INTRON	ENSG00000234147	ENSG00000234147.3	ENST00000650553.2:ENST00000692940.1:ENST00000683641.1:ENST00000682196.1:ENST00000684320.1:ENST00000683889.1:ENST00000683062.1:ENST00000682608.1:ENST00000455011.2:ENST00000682812.1:ENST00000683340.1:ENST00000683841.1:ENST00000683589.1:ENST00000684268.1:ENST00000683480.1:ENST00000684120.1	lncRNA	lncRNA	lncRNA	lncRNA	10	124	2	1.73771	2.35859	2.97947	0.011556	2.2808e-4	0.0889104	0.0133228
chr2	26778899	26778996	715674	0	+	0.402062	(0.378,0.408]	chr2	82657	5	UTR3	UTR3:EXON_MRNA:INTRON	SLC35F6:CENPA	ENSG00000213699.9:ENSG00000115163.15	ENST00000344420.10:ENST00000429494.5:ENST00000475662.5:ENST00000414029.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	57	2	2.05897	2.3585599999999998	2.65815	0.0339294	0.00391167	0.134508	0.0569957
chrX	48917180	48917280	7815682	0	-	0.65	(0.57,1]	chrX	796810	14	INTRON	INTRON	PIM2	ENSG00000102096.9	ENST00000376509.4	protein_coding	protein_coding	protein_coding	protein_coding	4	29	2	2.23711	2.35852	2.47993	0.0172108	0.007207	0.104099	0.0756278
chrX	154767876	154767961	7739338	0	+	0.6	(0.57,1]	chrX	792407	1	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DKC1	ENSG00000130826.19	ENST00000620277.4:ENST00000413910.6:ENST00000426673.6:ENST00000696575.1:ENST00000369550.10:ENST00000696579.1:ENST00000696578.1:ENST00000696577.1:ENST00000696576.1:ENST00000696580.1:ENST00000696581.1:ENST00000696582.1:ENST00000696583.1:ENST00000696627.1:ENST00000696628.1:ENST00000696584.1:ENST00000696585.1:ENST00000696586.1:ENST00000696587.1:ENST00000696588.1:ENST00000437719.5:ENST00000412124.5:ENST00000484317.6:ENST00000696589.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	29	2	2.23711	2.35852	2.47993	0.0172108	0.007207	0.104099	0.0756278
chr5	131699202	131699302	2719756	0	-	0.28	[0,0.28]	chr5	255677	2	SS3_PROX	SS3_PROX:INTRON	FNIP1	ENSG00000217128.13	ENST00000510461.6:ENST00000307954.12:ENST00000307968.11:ENST00000511848.1	protein_coding	protein_coding	protein_coding	protein_coding	7	126	2	2.28702	2.3584	2.42978	0.0149657	0.00250884	0.0994339	0.0465025
chr22	46345725	46345823	7533984	0	+	0.397959	(0.378,0.408]	chr22	770374	20	INTRON	INTRON	TRMU	ENSG00000100416.15	ENST00000486620.5:ENST00000441818.5:ENST00000381021.7:ENST00000453630.5:ENST00000456595.5:ENST00000457572.5:ENST00000645190.1:ENST00000645026.1:ENST00000647301.1:ENST00000642562.1:ENST00000381019.3:ENST00000642923.1:ENST00000496831.5:ENST00000465378.6:ENST00000644006.1:ENST00000485175.5:ENST00000643137.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	57	2	2.30628	2.358325	2.41037	0.0163339	0.0100185	0.101571	0.0880217
chr12	122880039	122880139	5442416	0	-	0.44	(0.408,0.44]	chr12	520621	91	EXON_MRNA	EXON_MRNA:INTRON	VPS37B:ENSG00000280138	ENSG00000139722.7:ENSG00000280138.1	ENST00000267202.7:ENST00000535765.5:ENST00000371248.3:ENST00000623210.1	protein_coding	protein_coding	protein_coding:TEC	protein_coding:TEC	5	57	2	1.40374	2.358155	3.31257	0.0721345	0.00198621	0.187433	0.0411469
chr19	55055657	55055756	7212229	0	-	0.434343	(0.408,0.44]	chr19	732254	43	INTRON	INTRON	RDH13	ENSG00000160439.16	ENST00000591960.1:ENST00000415061.8:ENST00000610356.4:ENST00000396247.7:ENST00000291892.10:ENST00000592573.1:ENST00000587721.1:ENST00000589605.5:ENST00000589305.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	111	2	1.6007	2.358115	3.11553	0.02345	1.01454e-4	0.11867	0.00850967
chr10	21554575	21554673	4404614	0	+	0.44898	(0.44,0.476]	chr10	406433	23	INTRON	INTRON	MLLT10	ENSG00000078403.17	ENST00000651097.1:ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000377100.8:ENST00000377091.7:ENST00000650772.1:ENST00000651298.1:ENST00000652497.1:ENST00000495130.5:ENST00000377059.7:ENST00000621220.4:ENST00000476557.5:ENST00000462999.5:ENST00000430455.2:ENST00000479634.1:ENST00000480415.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	56	2	1.7965	2.358	2.9195	0.0205549	0.0102021	0.122348	0.0850389
chr2	68184679	68184778	1145840	0	-	0.353535	(0.35,0.378]	chr2	122371	33	INTRON	INTRON	PPP3R1	ENSG00000221823.11	ENST00000234310.8:ENST00000409752.5:ENST00000409377.1	protein_coding	protein_coding	protein_coding	protein_coding	4	58	2	2.06612	2.3579600000000003	2.6498	0.0210137	0.0164908	0.122348	0.102419
chr1	193251884	193251981	285936	0	+	0.329897	(0.32,0.35]	chr1	32871	13	UTR3	UTR3:EXON_MRNA	CDC73	ENSG00000134371.14	ENST00000643006.1:ENST00000367435.5:ENST00000635846.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	136	2	2.22834	2.357955	2.48757	0.00242823	0.00192722	0.0455188	0.0397539
chr5	139564904	139565004	2500539	0	+	0.3	(0.28,0.32]	chr5	239026	21	INTRON	INTRON	UBE2D2	ENSG00000131508.16	ENST00000511725.5:ENST00000505007.5:ENST00000398733.8:ENST00000510470.1:ENST00000398734.8:ENST00000505548.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	72	2	1.40698	2.357955	3.30893	0.0778529	0.00260504	0.196685	0.0470772
chr16	16515313	16515413	6311015	0	+	0.38	(0.378,0.408]	chr16	604098	153	INTRON	INTRON	ENSG00000260126	ENSG00000260126.2	ENST00000567465.2	lncRNA	lncRNA	lncRNA	lncRNA	4	58	2	2.23831	2.357915	2.47752	0.0179575	0.0092831	0.114265	0.0817766
chr3	43688810	43688910	1676120	0	-	0.38	(0.378,0.408]	chr3	171075	1	SS5_PROX	SS5_PROX:INTRON	ANO10	ENSG00000160746.13	ENST00000413397.5:ENST00000439141.5:ENST00000428831.1:ENST00000436073.1:ENST00000495772.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	58	2	2.23831	2.357915	2.47752	0.0179575	0.0092831	0.114265	0.0817766
chr10	80470382	80470482	4476393	0	+	0.39	(0.378,0.408]	chr10	412074	13	INTRON	INTRON	TSPAN14	ENSG00000108219.15	ENST00000429989.7:ENST00000481124.5:ENST00000372158.6:ENST00000372157.6:ENST00000469149.1:ENST00000372164.7:ENST00000341863.10:ENST00000372156.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	43	2	2.00398	2.3579049999999997	2.71183	0.0393906	0.0170789	0.143072	0.110899
chr2	44228187	44228278	765160	0	+	0.395604	(0.378,0.408]	chr2	86715	1	EXON_LNCRNA	EXON_LNCRNA:INTRON	PPM1B:ENSG00000289272	ENSG00000138032.21:ENSG00000289272.1	ENST00000282412.9:ENST00000378540.8:ENST00000378551.6:ENST00000409432.7:ENST00000345249.8:ENST00000459690.5:ENST00000487286.1:ENST00000690844.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA:processed_transcript	3	43	2	2.00398	2.3579049999999997	2.71183	0.0393906	0.0170789	0.143072	0.110899
chr8	102386899	102386998	4012498	0	-	0.484848	(0.476,0.515]	chr8	367237	249	INTRON	INTRON	UBR5	ENSG00000104517.13	ENST00000520539.6:ENST00000220959.8:ENST00000521922.5	protein_coding	protein_coding	protein_coding	protein_coding	6	82	2	1.79187	2.357865	2.92386	0.0362169	3.01132e-4	0.138959	0.0155054
chr17	82450109	82450198	6853276	0	-	0.52809	(0.515,0.57]	chr17	679299	1	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SS3_PROX:SS5_PROX:INTRON	CYBC1	ENSG00000178927.18	ENST00000306645.10:ENST00000342572.12:ENST00000434650.6:ENST00000584024.5:ENST00000437807.6:ENST00000583617.5:ENST00000585064.5:ENST00000578919.5:ENST00000580560.5:ENST00000581196.5:ENST00000584503.5:ENST00000585080.5:ENST00000577888.5:ENST00000577707.5:ENST00000578913.5:ENST00000584891.5:ENST00000584408.5:ENST00000577696.5:ENST00000577471.5:ENST00000577834.5:ENST00000578941.5:ENST00000578064.1:ENST00000582395.5:ENST00000582608.5:ENST00000583359.1:ENST00000582545.2:ENST00000583778.1:ENST00000583242.1:ENST00000585115.1:ENST00000584791.1:ENST00000582456.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	48	2	1.56838	2.35784	3.1473	0.0424458	0.00397184	0.161763	0.0549214
chr8	31061334	31061433	3728210	0	+	0.242424	[0,0.28]	chr8	346535	17	INTRON	INTRON	WRN	ENSG00000165392.11	ENST00000650667.1:ENST00000298139.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	115	2	1.43856	2.3578200000000002	3.27708	0.0304026	0.00517359	0.143385	0.0631676
chr17	16445161	16445261	6562711	0	+	0.44	(0.408,0.44]	chr17	637925	32	INTRON	INTRON	SNHG29	ENSG00000175061.19	ENST00000584177.5:ENST00000665646.1:ENST00000660419.1:ENST00000668333.1:ENST00000664939.1:ENST00000583400.7:ENST00000669136.1:ENST00000580770.5:ENST00000581718.6:ENST00000579473.6:ENST00000581361.5:ENST00000692724.1:ENST00000689691.1:ENST00000686699.1:ENST00000472367.5:ENST00000483588.2:ENST00000478103.6:ENST00000658943.1	lncRNA	lncRNA	lncRNA	lncRNA	4	49	2	1.81759	2.35777	2.89795	0.0316273	0.0110735	0.144405	0.0873897
chr21	38081652	38081752	7463698	0	-	0.44	(0.408,0.44]	chr21	760281	265	INTRON	INTRON	DSCR4	ENSG00000184029.9	ENST00000398948.5:ENST00000328264.7	lncRNA	lncRNA	lncRNA	lncRNA	4	49	2	1.81759	2.35777	2.89795	0.0316273	0.0110735	0.144405	0.0873897
chr2	178542995	178543095	931149	0	+	0.32	(0.28,0.32]	chr2	102319	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TTN-AS1	ENSG00000237298.10	ENST00000419746.5:ENST00000630096.2:ENST00000659121.1:ENST00000456053.5:ENST00000590773.6:ENST00000592600.6:ENST00000592630.5:ENST00000592750.5:ENST00000591332.5:ENST00000586707.6:ENST00000590040.5:ENST00000653807.1:ENST00000585451.5:ENST00000657023.1:ENST00000626117.2:ENST00000590807.5:ENST00000626954.2:ENST00000586452.5:ENST00000592689.5:ENST00000586831.5:ENST00000625480.2:ENST00000628826.2:ENST00000628296.2:ENST00000626138.2:ENST00000625536.2:ENST00000627564.2:ENST00000438095.1:ENST00000590932.5	lncRNA	lncRNA	lncRNA	lncRNA	5	71	2	1.51776	2.3577500000000002	3.19774	0.0528371	0.00548491	0.178899	0.0648867
chr9	130764954	130765054	4214374	0	+	0.35	(0.32,0.35]	chr9	386427	501	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000393293.4	protein_coding	protein_coding	protein_coding	protein_coding	8	113	2	1.8916	2.3577250000000003	2.82385	0.00936694	0.00217392	0.0817766	0.043502
chr1	1674571	1674668	360777	0	-	0.391753	(0.378,0.408]	chr1	41997	26	INTRON	INTRON	SLC35E2B	ENSG00000189339.12	ENST00000614300.4:ENST00000617444.5:ENST00000611123.1:ENST00000481276.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	135	2	2.29852	2.3576249999999996	2.41673	0.00152853	0.00122932	0.0361457	0.0321361
chr6	26138439	26138536	2837137	0	+	0.350515	(0.35,0.378]	chr6	266013	5	UTR3	UTR3:EXON_MRNA	H2AC6	ENSG00000180573.10	ENST00000314088.6:ENST00000602637.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	37	487	2	2.21279	2.35762	2.50245	8.11758e-5	7.70279e-5	0.00807856	0.00735438
chr5	132878673	132878772	2724387	0	-	0.323232	(0.32,0.35]	chr5	256225	34	UTR3	UTR3:EXON_MRNA	AFF4	ENSG00000072364.13	ENST00000265343.10	protein_coding	protein_coding	protein_coding	protein_coding	7	107	2	2.16099	2.357595	2.5542	0.0127227	9.3945e-4	0.0926667	0.0280187
chr2	53963255	53963355	1120501	0	-	0.41	(0.408,0.44]	chr2	120102	136	INTRON	INTRON	PSME4	ENSG00000068878.15	ENST00000404125.6:ENST00000389993.7:ENST00000481518.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	13	143	2	1.9435500000000001	2.357545	2.77154	0.00170886	9.14134e-4	0.0381936	0.0278396
chr8	30810372	30810468	3933127	0	-	0.541667	(0.515,0.57]	chr8	360330	2	INTRON	INTRON	PPP2CB	ENSG00000104695.13	ENST00000221138.9:ENST00000518564.1:ENST00000518243.5:ENST00000520500.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	87	2	2.13808	2.357525	2.57697	0.00333489	0.00153959	0.0512081	0.0362709
chr11	62884790	62884885	4799636	0	+	0.294737	(0.28,0.32]	chr11	444839	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SLC3A2	ENSG00000168003.18	ENST00000680729.1:ENST00000680002.1:ENST00000681467.1:ENST00000377890.6:ENST00000538084.2:ENST00000681569.1:ENST00000680725.1:ENST00000377891.6:ENST00000377889.6:ENST00000681215.1:ENST00000535296.5:ENST00000680631.1:ENST00000544377.2:ENST00000680610.1:ENST00000680297.1:ENST00000680134.1:ENST00000681232.1:ENST00000681657.1:ENST00000541425.6:ENST00000679908.1:ENST00000681563.1:ENST00000338663.12:ENST00000680654.1:ENST00000681107.1:ENST00000541649.2:ENST00000538682.6:ENST00000536981.6:ENST00000539891.6:ENST00000679594.1:ENST00000535768.2:ENST00000537508.6:ENST00000457660.6:ENST00000546312.5:ENST00000542922.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	167	2	1.50551	2.357515	3.20952	0.0379201	3.21422e-5	0.141362	0.00452387
chr18	13001682	13001782	6876675	0	+	0.42	(0.408,0.44]	chr18	681356	1	SS5_PROX	SS5_PROX:INTRON	CEP192	ENSG00000101639.19	ENST00000325971.12:ENST00000506447.5:ENST00000589596.5:ENST00000507064.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	66	2	2.30838	2.357495	2.40661	0.011475	0.00547703	0.0888882	0.0671198
chr1	32114931	32115031	63522	0	+	0.44	(0.408,0.44]	chr1	8071	64	INTRON	INTRON	KPNA6	ENSG00000025800.14	ENST00000373625.8:ENST00000471599.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	55	2	2.11447	2.357475	2.60048	0.0285207	0.00484324	0.12666	0.0640618
chr12	121314989	121315088	5436790	0	-	0.30303	(0.28,0.32]	chr12	519847	46	INTRON	INTRON	ANAPC5	ENSG00000089053.13	ENST00000261819.8:ENST00000535641.5:ENST00000541887.5:ENST00000534976.5:ENST00000441917.6:ENST00000539079.5:ENST00000544314.5:ENST00000535482.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	107	2	1.81786	2.35747	2.89708	0.0142986	0.00257346	0.104025	0.0451443
chr2	121518158	121518258	1221070	0	-	0.46	(0.44,0.476]	chr2	130026	20	INTRON	INTRON	CLASP1	ENSG00000074054.20	ENST00000263710.8:ENST00000397587.7:ENST00000541377.5:ENST00000409078.8:ENST00000455322.6:ENST00000474065.5:ENST00000485112.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	41	2	2.33272	2.357455	2.38219	0.045456	0.0129984	0.149888	0.0991656
chr4	39714161	39714261	1953152	0	+	0.44	(0.408,0.44]	chr4	195630	154	INTRON	INTRON	UBE2K	ENSG00000078140.14	ENST00000510934.5:ENST00000261427.10:ENST00000438068.6:ENST00000513231.5:ENST00000503368.5:ENST00000445950.2:ENST00000510719.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	66	2	2.22268	2.35743	2.49218	0.00855168	0.00770925	0.0784002	0.0780217
chr10	35354879	35354978	4424686	0	+	0.252525	[0,0.28]	chr10	407899	173	INTRON	INTRON	CCNY	ENSG00000108100.18	ENST00000374706.5:ENST00000490012.6:ENST00000493157.6:ENST00000374704.8:ENST00000265375.13:ENST00000339497.7:ENST00000492478.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	43	2	2.20927	2.357385	2.5055	0.0794763	0.0359431	0.19979	0.152322
chr11	13706019	13706117	4742684	0	+	0.163265	[0,0.28]	chr11	439171	52	INTRON	INTRON	FAR1	ENSG00000197601.13	ENST00000354817.8:ENST00000532701.1:ENST00000524933.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	43	2	2.20927	2.357385	2.5055	0.0794763	0.0359431	0.19979	0.152322
chr12	110296152	110296233	5226249	0	+	0.617284	(0.57,1]	chr12	495241	3	EXON_LNCRNA	EXON_LNCRNA:SS3_PROX:INTRON	ATP2A2	ENSG00000174437.18	ENST00000552636.2:ENST00000308664.10:ENST00000539276.7:ENST00000377685.9:ENST00000548169.2:ENST00000550248.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	30	2	1.9042	2.357385	2.81057	0.0476976	0.00169295	0.153019	0.0381936
chr7	75471704	75471804	3558784	0	-	0.58	(0.57,1]	chr7	331545	291	INTRON	INTRON	POM121C	ENSG00000272391.6	ENST00000615331.5:ENST00000398379.2	protein_coding	protein_coding	protein_coding	protein_coding	8	52	2	2.10552	2.3573399999999998	2.60916	0.00330145	0.00119055	0.0527031	0.0315806
chr7	39628521	39628621	3309199	0	+	0.43	(0.408,0.44]	chr7	307358	37	INTRON	INTRON	RALA	ENSG00000006451.8	ENST00000468201.1:ENST00000005257.7:ENST00000436179.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	55	2	2.26792	2.35733	2.44674	0.0179973	0.00868283	0.106756	0.0842798
chr22	17640084	17640184	7475033	0	+	0.62	(0.57,1]	chr22	762152	8	INTRON	INTRON	BCL2L13	ENSG00000099968.18	ENST00000399781.5:ENST00000399782.5:ENST00000337612.9:ENST00000418951.6:ENST00000538149.5:ENST00000543133.5:ENST00000611738.4:ENST00000616863.4:ENST00000618481.4:ENST00000498133.5:ENST00000317582.10:ENST00000464649.1:ENST00000493680.5:ENST00000355028.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	22	2	2.05026	2.35732	2.66438	0.0321326	0.0171563	0.145026	0.104099
chr22	47782861	47782961	7540885	0	+	0.6	(0.57,1]	chr22	770756	40	INTRON	INTRON	ENSG00000224271	ENSG00000224271.7	ENST00000664761.1:ENST00000650683.1:ENST00000651536.1:ENST00000652656.1:ENST00000652072.1:ENST00000651445.1:ENST00000423737.5:ENST00000650660.1:ENST00000651056.1:ENST00000652611.1:ENST00000652399.1:ENST00000652123.1:ENST00000652505.1:ENST00000652030.2:ENST00000651403.1:ENST00000652228.1:ENST00000651124.1:ENST00000650972.1:ENST00000651637.1:ENST00000651003.1:ENST00000651948.2:ENST00000651293.1:ENST00000651939.1:ENST00000650787.1:ENST00000651517.1:ENST00000651662.1:ENST00000651638.1:ENST00000670853.1:ENST00000652080.1:ENST00000651294.1:ENST00000652164.1:ENST00000651538.1:ENST00000651033.1:ENST00000651584.1	lncRNA	lncRNA	lncRNA	lncRNA	3	22	2	2.05026	2.35732	2.66438	0.0321326	0.0171563	0.145026	0.104099
chr7	156892269	156892369	3688009	0	-	0.64	(0.57,1]	chr7	342097	4	SS5_PROX	SS5_PROX:INTRON	LMBR1	ENSG00000105983.23	ENST00000353442.10:ENST00000415428.5:ENST00000454132.5:ENST00000434503.5:ENST00000430278.5:ENST00000434278.5:ENST00000444719.5:ENST00000461469.5:ENST00000414218.1:ENST00000434453.1:ENST00000498034.5:ENST00000433968.5:ENST00000485985.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	22	2	2.05026	2.35732	2.66438	0.0321326	0.0171563	0.145026	0.104099
chr1	26734589	26734689	51562	0	+	0.4	(0.378,0.408]	chr1	6565	14	INTRON	INTRON	ARID1A	ENSG00000117713.21	ENST00000430799.7:ENST00000324856.13:ENST00000457599.6:ENST00000374152.7:ENST00000636219.1	protein_coding	protein_coding	protein_coding	protein_coding	5	58	2	1.76	2.357295	2.95459	0.023484	0.00957623	0.128531	0.0820838
chr12	132799275	132799375	5449914	0	-	0.39	(0.378,0.408]	chr12	522063	4	INTRON	INTRON	GOLGA3	ENSG00000090615.16	ENST00000204726.9:ENST00000450791.8:ENST00000693666.1:ENST00000688114.1:ENST00000687190.1:ENST00000690511.1:ENST00000685283.1:ENST00000691696.1:ENST00000691636.1:ENST00000690897.1:ENST00000690465.1:ENST00000456883.7:ENST00000692253.1:ENST00000687502.1:ENST00000688772.1:ENST00000687479.1:ENST00000690709.1:ENST00000545875.4:ENST00000688251.1:ENST00000690573.1:ENST00000685195.1:ENST00000686425.1:ENST00000693437.1:ENST00000692831.1:ENST00000688068.1:ENST00000692951.1:ENST00000689441.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	69	2	1.73164	2.357295	2.98295	0.0441773	9.47389e-4	0.149888	0.0282007
chr7	127663748	127663848	3402507	0	+	0.39	(0.378,0.408]	chr7	318063	109	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000463020.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	58	2	1.76	2.357295	2.95459	0.023484	0.00957623	0.128531	0.0820838
chr21	22417977	22418076	7386552	0	+	0.272727	[0,0.28]	chr21	752749	87	INTRON	INTRON	ENSG00000226043	ENSG00000226043.2	ENST00000444130.1	lncRNA	lncRNA	lncRNA	lncRNA	3	60	2	2.02265	2.35726	2.69187	0.0449017	0.0221271	0.149888	0.123903
chr22	23270743	23270839	7484117	0	+	0.416667	(0.408,0.44]	chr22	763575	19	INTRON	INTRON	BCR	ENSG00000186716.21	ENST00000359540.7:ENST00000305877.13:ENST00000427791.1	protein_coding	protein_coding	protein_coding	protein_coding	3	41	2	2.27464	2.35726	2.43988	0.0398236	0.0158016	0.143072	0.109464
chr21	42845958	42846057	7467565	0	-	0.525253	(0.515,0.57]	chr21	760925	23	INTRON	INTRON	WDR4	ENSG00000160193.12	ENST00000330317.6	protein_coding	protein_coding	protein_coding	protein_coding	16	173	2	1.70083	2.35723	3.01363	0.00520656	1.31531e-5	0.0655877	0.00286967
chr7	112781814	112781913	3624318	0	-	0.30303	(0.28,0.32]	chr7	337160	33	INTRON	INTRON	TMEM168	ENSG00000146802.13	ENST00000312814.11:ENST00000454074.5:ENST00000447395.5:ENST00000418785.5:ENST00000449743.1:ENST00000441474.1	protein_coding	protein_coding	protein_coding	protein_coding	10	166	2	1.95167	2.357205	2.76274	0.0113262	1.87955e-4	0.0886611	0.011951
chrX	139867062	139867162	7905245	0	-	0.36	(0.35,0.378]	chrX	804457	349	INTRON	INTRON	ATP11C	ENSG00000101974.15	ENST00000370557.5:ENST00000682941.1:ENST00000485626.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	45	2	1.98929	2.357135	2.72498	0.0417909	0.0168499	0.147075	0.11068
chr14	23068888	23068975	5842707	0	-	0.505747	(0.476,0.515]	chr14	555604	2	SS3_PROX	SS3_PROX:INTRON	ACIN1	ENSG00000100813.15	ENST00000605057.6:ENST00000557515.5:ENST00000262710.5:ENST00000457657.5:ENST00000357481.6:ENST00000338631.10:ENST00000473758.5:ENST00000397341.7:ENST00000555053.5:ENST00000555566.1:ENST00000553721.5:ENST00000557432.2:ENST00000555352.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	11	125	2	1.82192	2.357	2.89208	0.00497872	4.83014e-4	0.0646039	0.0203603
chr15	25433571	25433671	6121788	0	-	0.39	(0.378,0.408]	chr15	582937	61	INTRON	INTRON	UBE3A	ENSG00000114062.22	ENST00000648336.2:ENST00000438097.6:ENST00000635914.1:ENST00000638155.1:ENST00000637886.1:ENST00000638011.1:ENST00000649550.1:ENST00000650110.1:ENST00000630424.2:ENST00000566215.5:ENST00000428984.6:ENST00000675177.1:ENST00000675593.1:ENST00000625778.3:ENST00000675000.1:ENST00000626793.2:ENST00000628733.2:ENST00000630907.2:ENST00000675038.1:ENST00000629886.2:ENST00000628267.2:ENST00000629252.2:ENST00000625681.2:ENST00000627018.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	42	2	2.11103	2.356995	2.60296	0.0267851	0.0266911	0.134419	0.123349
chr3	17732644	17732744	1630334	0	-	0.4	(0.378,0.408]	chr3	168275	304	INTRON	INTRON	TBC1D5	ENSG00000131374.15	ENST00000253692.11:ENST00000696125.1:ENST00000414318.2:ENST00000429383.8:ENST00000415814.6:ENST00000452492.6:ENST00000412981.5:ENST00000428355.5:ENST00000425944.5:ENST00000430169.5:ENST00000445294.5:ENST00000414349.5:ENST00000443499.6:ENST00000444756.5:ENST00000497531.5:ENST00000443386.5:ENST00000446863.5:ENST00000444471.5:ENST00000481396.5:ENST00000423331.6:ENST00000485432.1:ENST00000471679.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	42	2	2.11103	2.356995	2.60296	0.0267851	0.0266911	0.134419	0.123349
chr17	42269416	42269516	6772155	0	-	0.36	(0.35,0.378]	chr17	666964	369	INTRON	INTRON	STAT5B	ENSG00000173757.10	ENST00000293328.8:ENST00000468312.1:ENST00000415845.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	114	2	2.34722	2.35694	2.36666	0.00312988	0.00212276	0.0499376	0.0426185
chr1	110366474	110366573	182616	0	+	0.313131	(0.28,0.32]	chr1	20257	101	INTRON	INTRON	LAMTOR5-AS1	ENSG00000224699.10	ENST00000626572.2	lncRNA	lncRNA	lncRNA	lncRNA	9	148	2	2.19692	2.3568949999999997	2.51687	0.00700822	6.83039e-4	0.0718189	0.023795
chr20	38423704	38423804	7342188	0	-	0.46	(0.44,0.476]	chr20	748302	2	EXON_LNCRNA	EXON_LNCRNA:INTRON	SNHG17	ENSG00000196756.14	ENST00000654008.2:ENST00000658076.1:ENST00000662982.2:ENST00000456953.7:ENST00000654183.2:ENST00000663540.2:ENST00000651115.2:ENST00000667835.1:ENST00000660885.2:ENST00000662213.1:ENST00000665233.2:ENST00000666268.2:ENST00000665735.1:ENST00000660558.2:ENST00000691280.1:ENST00000658488.2:ENST00000688336.1:ENST00000668054.2:ENST00000690441.1:ENST00000655520.2:ENST00000687490.1:ENST00000664626.1:ENST00000658051.1:ENST00000668042.1:ENST00000686971.1:ENST00000663187.1:ENST00000669114.1:ENST00000653343.1:ENST00000666225.1:ENST00000659186.1:ENST00000671309.1:ENST00000669405.1:ENST00000666806.1:ENST00000657665.1:ENST00000657868.1:ENST00000663534.1:ENST00000658141.1:ENST00000689917.1:ENST00000664073.2:ENST00000653697.1:ENST00000656320.1:ENST00000686814.1:ENST00000417578.7:ENST00000654853.1:ENST00000665440.1:ENST00000436764.7:ENST00000668482.2:ENST00000671249.1:ENST00000655692.1:ENST00000662568.1:ENST00000659255.1:ENST00000665693.1:ENST00000693250.1:ENST00000691368.1:ENST00000693227.1:ENST00000690361.1:ENST00000670051.1:ENST00000667912.1:ENST00000693665.1:ENST00000665181.1:ENST00000687532.1:ENST00000691386.1:ENST00000693684.1:ENST00000666331.1:ENST00000669480.1:ENST00000658905.1:ENST00000661252.1:ENST00000669137.1:ENST00000688133.1:ENST00000689414.1:ENST00000691314.1:ENST00000669033.1:ENST00000686145.1:ENST00000653938.1:ENST00000663784.1:ENST00000665003.1:ENST00000659400.1:ENST00000653753.1:ENST00000449469.5:ENST00000654389.1:ENST00000657429.1:ENST00000667412.1:ENST00000654092.1:ENST00000653277.1:ENST00000663955.1:ENST00000656023.1:ENST00000692262.1:ENST00000414142.5:ENST00000659753.1:ENST00000670958.1:ENST00000657216.2:ENST00000664636.1:ENST00000657843.1:ENST00000660189.1:ENST00000660064.1:ENST00000655198.1:ENST00000662572.1:ENST00000423536.6:ENST00000658455.1:ENST00000666419.1:ENST00000413755.5	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	3	41	2	1.85146	2.356885	2.86231	0.0545846	0.012214	0.182529	0.0910127
chr17	44322005	44322092	6779372	0	-	0.517241	(0.515,0.57]	chr17	668461	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SLC25A39	ENSG00000013306.16	ENST00000225308.12:ENST00000591006.5:ENST00000377095.10:ENST00000590194.5:ENST00000586016.5:ENST00000537904.6:ENST00000588767.5:ENST00000588315.5:ENST00000585695.5:ENST00000588049.5:ENST00000585636.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	47	2	2.08547	2.35682	2.62817	0.0289426	0.004048	0.1274	0.0578376
chr16	88606536	88606636	6418627	0	+	0.55	(0.515,0.57]	chr16	615820	62	INTRON	INTRON	ZC3H18	ENSG00000158545.16	ENST00000301011.10:ENST00000452588.6:ENST00000567085.1:ENST00000568072.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	36	2	2.15051	2.3567850000000004	2.56306	0.0247751	0.0238113	0.131869	0.118889
chr16	16071929	16072029	6308995	0	+	0.52	(0.515,0.57]	chr16	603589	2	SS5_PROX	SS5_PROX:INTRON	ABCC1	ENSG00000103222.20	ENST00000678422.1:ENST00000677164.1:ENST00000399408.7:ENST00000572882.3:ENST00000399410.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	35	2	2.1885	2.35677	2.52504	0.029342	0.0202537	0.128055	0.121364
chr4	51893437	51893535	1959069	0	+	0.561224	(0.515,0.57]	chr4	196342	12	INTRON	INTRON	DCUN1D4	ENSG00000109184.15	ENST00000509376.5:ENST00000381441.7:ENST00000334635.10:ENST00000507741.5:ENST00000477560.5:ENST00000451288.6:ENST00000510587.5:ENST00000507659.5:ENST00000505634.5:ENST00000510808.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	35	2	2.1885	2.35677	2.52504	0.029342	0.0202537	0.128055	0.121364
chr16	29544480	29544579	6471032	0	-	0.464646	(0.44,0.476]	chr16	625223	24	INTRON	INTRON	ENSG00000288632:SMG1P2	ENSG00000288632.1:ENSG00000205534.6	ENST00000675579.1:ENST00000566127.1	lncRNA	lncRNA	lncRNA:transcribed_unprocessed_pseudogene	lncRNA:transcribed_unprocessed_pseudogene	6	75	2	1.96805	2.356755	2.74546	0.0109533	0.00326603	0.0925675	0.0508595
chr7	5996528	5996627	3475718	0	-	0.313131	(0.28,0.32]	chr7	325110	5	INTRON	INTRON	PMS2	ENSG00000122512.16	ENST00000265849.12:ENST00000441476.6:ENST00000642292.1:ENST00000642456.1:ENST00000643595.1:ENST00000382321.5:ENST00000644110.1:ENST00000406569.7:ENST00000469652.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	10	134	2	1.54831	2.356705	3.1651	0.0186314	8.79973e-4	0.117449	0.0272129
chr9	112223256	112223355	4316841	0	-	0.313131	(0.28,0.32]	chr9	397001	57	UTR3	UTR3:EXON_MRNA	PTBP3	ENSG00000119314.16	ENST00000334318.10:ENST00000458258.5:ENST00000374257.6:ENST00000374255.6:ENST00000343327.6	protein_coding	protein_coding	protein_coding	protein_coding	5	84	2	2.29708	2.3566649999999996	2.41625	0.0195087	0.00419958	0.109483	0.0592209
chr7	72939968	72940068	3330408	0	+	0.41	(0.408,0.44]	chr7	309614	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	POM121	ENSG00000196313.13	ENST00000627934.3:ENST00000395270.5:ENST00000434423.5	protein_coding	protein_coding	protein_coding	protein_coding	3	44	2	2.31565	2.3565750000000003	2.3975	0.040266	0.0154718	0.161534	0.100909
chr16	11346266	11346365	6290945	0	+	0.545455	(0.515,0.57]	chr16	602321	1	INTRON	INTRON	RMI2	ENSG00000175643.10	ENST00000649869.1:ENST00000572173.1:ENST00000576027.1:ENST00000312499.6:ENST00000648619.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	47	2	2.32836	2.35656	2.38476	0.0126662	0.0110593	0.0982897	0.0873897
chr1	65276110	65276210	135754	0	+	0.53	(0.515,0.57]	chr1	15346	108	INTRON	INTRON	DNAJC6	ENSG00000116675.16	ENST00000463018.5:ENST00000494710.6:ENST00000263441.11:ENST00000395325.7:ENST00000483402.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	35	2	1.94945	2.356495	2.76354	0.0414068	0.0147344	0.161557	0.0983813
chr21	15744517	15744617	7370240	0	+	0.52	(0.515,0.57]	chr21	752186	137	INTRON	INTRON	USP25	ENSG00000155313.16	ENST00000400183.7:ENST00000285681.6:ENST00000285679.10:ENST00000351097.9	protein_coding	protein_coding	protein_coding	protein_coding	3	35	2	1.94945	2.356495	2.76354	0.0414068	0.0147344	0.161557	0.0983813
chr3	183729848	183729948	1580615	0	+	0.52	(0.515,0.57]	chr3	163056	6	INTRON	INTRON	YEATS2	ENSG00000163872.16	ENST00000305135.10	protein_coding	protein_coding	protein_coding	protein_coding	3	35	2	1.94945	2.356495	2.76354	0.0414068	0.0147344	0.161557	0.0983813
chr8	127802350	127802449	3860120	0	+	0.535354	(0.515,0.57]	chr8	355380	59	INTRON	INTRON	PVT1	ENSG00000249859.13	ENST00000667305.1:ENST00000690350.1:ENST00000653522.1:ENST00000664214.1:ENST00000664139.1:ENST00000661830.1:ENST00000657289.1:ENST00000504719.7:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000656880.1:ENST00000660200.1:ENST00000669132.1:ENST00000657211.1:ENST00000653845.1:ENST00000517525.2:ENST00000665856.1:ENST00000651587.1:ENST00000692980.1:ENST00000666353.1:ENST00000657183.1:ENST00000654324.1:ENST00000658556.1:ENST00000657693.1:ENST00000666080.1:ENST00000667539.1:ENST00000521951.1:ENST00000524165.6:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000664293.1:ENST00000657297.1:ENST00000662410.1:ENST00000670795.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000654091.1:ENST00000523328.6:ENST00000657356.1:ENST00000523427.2:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000662061.1:ENST00000667204.1:ENST00000656491.1:ENST00000667714.1:ENST00000654105.1:ENST00000665721.1:ENST00000518528.2:ENST00000669416.1:ENST00000660438.1:ENST00000661160.1:ENST00000659326.1:ENST00000665246.1:ENST00000657384.1:ENST00000666842.1:ENST00000517790.2:ENST00000522963.6:ENST00000654369.1:ENST00000661625.1:ENST00000657596.1:ENST00000664995.1:ENST00000656532.1:ENST00000656168.1:ENST00000661988.1:ENST00000657517.1:ENST00000670714.1:ENST00000669951.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000656693.1:ENST00000668123.1:ENST00000666776.1:ENST00000664299.1:ENST00000669272.1:ENST00000659912.1:ENST00000670532.1:ENST00000660896.1:ENST00000667149.1:ENST00000656396.1:ENST00000523068.2	lncRNA	lncRNA	lncRNA	lncRNA	3	35	2	1.94945	2.356495	2.76354	0.0414068	0.0147344	0.161557	0.0983813
chr1	156215676	156215776	230921	0	+	0.5	(0.476,0.515]	chr1	27257	21	INTRON	INTRON	PMF1	ENSG00000160783.19	ENST00000368279.7:ENST00000466489.1:ENST00000368273.8:ENST00000368277.3:ENST00000606952.5:ENST00000497069.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	30	2	2.23335	2.35642	2.47949	0.0634557	0.0326974	0.177047	0.145164
chr11	73704215	73704315	4985215	0	-	0.49	(0.476,0.515]	chr11	470857	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	RAB6A	ENSG00000175582.20	ENST00000310653.10:ENST00000336083.8:ENST00000541973.5:ENST00000536566.5:ENST00000541588.5:ENST00000545625.5:ENST00000540771.5:ENST00000537446.5:ENST00000400470.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	30	2	2.23335	2.35642	2.47949	0.0634557	0.0326974	0.177047	0.145164
chr13	51433258	51433357	5595853	0	-	0.494949	(0.476,0.515]	chr13	534842	25	INTRON	INTRON	INTS6	ENSG00000102786.15	ENST00000398119.6:ENST00000311234.9:ENST00000469430.5:ENST00000486195.6:ENST00000491189.5:ENST00000491723.5:ENST00000461515.5:ENST00000491997.2:ENST00000488009.1:ENST00000485178.5:ENST00000483288.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	30	2	2.23335	2.35642	2.47949	0.0634557	0.0326974	0.177047	0.145164
chr17	75369791	75369891	6837439	0	-	0.49	(0.476,0.515]	chr17	675716	366	INTRON	INTRON	GRB2	ENSG00000177885.15	ENST00000316615.9:ENST00000316804.10:ENST00000392562.5:ENST00000392564.5:ENST00000392563.5:ENST00000648046.1:ENST00000578961.5:ENST00000582582.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	30	2	2.23335	2.35642	2.47949	0.0634557	0.0326974	0.177047	0.145164
chr17	80571664	80571764	6685053	0	+	0.48	(0.476,0.515]	chr17	653399	255	INTRON	INTRON	RPTOR	ENSG00000141564.15	ENST00000574767.5:ENST00000577161.5:ENST00000306801.8:ENST00000649732.1:ENST00000570891.5:ENST00000544334.6:ENST00000573746.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	30	2	2.23335	2.35642	2.47949	0.0634557	0.0326974	0.177047	0.145164
chr19	66033	66131	7108479	0	-	0.479592	(0.476,0.515]	chr19	713618	41	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	WASH5P	ENSG00000282458.1	ENST00000632506.1:ENST00000633719.1:ENST00000633703.1:ENST00000634023.1:ENST00000631796.1:ENST00000632089.1:ENST00000632496.1	transcribed_processed_pseudogene	retained_intron	transcribed_processed_pseudogene	retained_intron:processed_transcript	2	30	2	2.23335	2.35642	2.47949	0.0634557	0.0326974	0.177047	0.145164
chr2	128109038	128109133	862653	0	+	0.484211	(0.476,0.515]	chr2	96680	6	INTRON	INTRON	UGGT1	ENSG00000136731.13	ENST00000259253.11:ENST00000438277.5:ENST00000376723.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	30	2	2.23335	2.35642	2.47949	0.0634557	0.0326974	0.177047	0.145164
chr2	135097385	135097485	873124	0	+	0.48	(0.476,0.515]	chr2	97757	33	INTRON	INTRON	RAB3GAP1	ENSG00000115839.19	ENST00000539493.3:ENST00000688088.1:ENST00000693554.1:ENST00000690785.1:ENST00000689880.1:ENST00000264158.13:ENST00000690208.1:ENST00000691478.1:ENST00000686114.1:ENST00000685967.1:ENST00000442034.5:ENST00000687199.1:ENST00000691339.1:ENST00000688182.1:ENST00000487003.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	30	2	2.23335	2.35642	2.47949	0.0634557	0.0326974	0.177047	0.145164
chr7	102544205	102544305	3588588	0	-	0.48	(0.476,0.515]	chr7	335022	1	SS5_PROX	SS5_PROX:INTRON	POLR2J3	ENSG00000168255.20	ENST00000489144.5:ENST00000464525.5:ENST00000379340.9:ENST00000486319.5:ENST00000503564.5:ENST00000511773.5:ENST00000513506.6:ENST00000508848.5:ENST00000504677.5:ENST00000506060.5:ENST00000502415.5:ENST00000507355.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	30	2	2.23335	2.35642	2.47949	0.0634557	0.0326974	0.177047	0.145164
chr8	120469127	120469226	3849162	0	+	0.50505	(0.476,0.515]	chr8	354554	50	INTRON	INTRON	MTBP	ENSG00000172167.8	ENST00000305949.6:ENST00000523373.5:ENST00000522449.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	30	2	2.23335	2.35642	2.47949	0.0634557	0.0326974	0.177047	0.145164
chr9	27517568	27517668	4240005	0	-	0.5	(0.476,0.515]	chr9	389681	615	INTRON	INTRON	MOB3B	ENSG00000120162.10	ENST00000262244.6	protein_coding	protein_coding	protein_coding	protein_coding	2	30	2	2.23335	2.35642	2.47949	0.0634557	0.0326974	0.177047	0.145164
chr7	128992290	128992390	3635947	0	-	0.37	(0.35,0.378]	chr7	338093	2	SS3_PROX	SS3_PROX:INTRON	TNPO3	ENSG00000064419.14	ENST00000627585.2:ENST00000265388.10:ENST00000471234.5:ENST00000482320.5:ENST00000471166.1	protein_coding	protein_coding	protein_coding	protein_coding	4	55	2	2.24196	2.356305	2.47065	0.0386172	0.00744693	0.142656	0.0772645
chr7	131426046	131426145	3417432	0	+	0.424242	(0.408,0.44]	chr7	319231	110	INTRON	INTRON	MKLN1	ENSG00000128585.18	ENST00000421797.6:ENST00000352689.11:ENST00000494785.5:ENST00000458153.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	92	2	1.95554	2.356305	2.75707	0.00485149	0.00317496	0.0640618	0.0503542
chr7	139383038	139383138	3437827	0	+	0.37	(0.35,0.378]	chr7	320340	65	INTRON	INTRON	LUC7L2:FMC1-LUC7L2	ENSG00000146963.18:ENSG00000269955.2	ENST00000541170.7:ENST00000541515.3:ENST00000608368.5:ENST00000619796.4:ENST00000354926.9:ENST00000456182.5:ENST00000263545.7:ENST00000463912.5:ENST00000498518.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	55	2	2.24196	2.356305	2.47065	0.0386172	0.00744693	0.142656	0.0772645
chr12	53166727	53166827	5327412	0	-	0.46	(0.44,0.476]	chr12	508184	4	SS3_PROX	SS3_PROX:INTRON	CSAD	ENSG00000139631.20	ENST00000444623.6:ENST00000267085.8:ENST00000475890.5:ENST00000379850.7:ENST00000379846.5:ENST00000453446.6:ENST00000490923.5:ENST00000490589.5:ENST00000485004.5:ENST00000548698.5:ENST00000483632.5:ENST00000472908.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	50	2	2.1762	2.3563	2.5364	0.0309324	0.0092251	0.13151	0.0855292
chr6	163484294	163484394	3032408	0	+	0.5	(0.476,0.515]	chr6	282586	50	INTRON	INTRON	QKI	ENSG00000112531.17	ENST00000361758.8:ENST00000453779.6:ENST00000275262.11:ENST00000392127.6:ENST00000361752.8:ENST00000361195.6:ENST00000424802.7:ENST00000545607.5:ENST00000544436.5:ENST00000537041.5:ENST00000545346.1:ENST00000544823.5:ENST00000537883.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	49	2	1.63838	2.3563	3.07422	0.0555021	0.00506023	0.165463	0.0646039
chr2	95845666	95845766	1178209	0	-	0.31	(0.28,0.32]	chr2	125722	82	INTRON	INTRON	ANKRD36C	ENSG00000174501.15	ENST00000612359.4	protein_coding	protein_coding	protein_coding	protein_coding	5	84	2	1.96802	2.3561	2.74418	0.0251578	0.00328589	0.12011	0.0527031
chr4	108667450	108667542	2018565	0	+	0.293478	(0.28,0.32]	chr4	200742	3	UTR3	UTR3:EXON_MRNA	OSTC	ENSG00000198856.13	ENST00000613215.4:ENST00000361564.9	protein_coding	protein_coding	protein_coding	protein_coding	8	132	2	2.17756	2.356095	2.53463	0.0130851	6.24568e-4	0.0934394	0.0224805
chr7	152048108	152048208	3449735	0	+	0.34	(0.32,0.35]	chr7	322435	200	INTRON	INTRON	GALNT11	ENSG00000178234.13	ENST00000430044.7:ENST00000482812.1:ENST00000431668.1:ENST00000446096.5:ENST00000447778.5:ENST00000423337.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	47	2	2.13945	2.35604	2.57263	0.0312297	0.0254517	0.133676	0.13151
chr3	194466295	194466394	1890993	0	-	0.373737	(0.35,0.378]	chr3	189242	37	INTRON	INTRON	ATP13A3	ENSG00000133657.17	ENST00000687055.1:ENST00000645538.1:ENST00000645319.2:ENST00000439040.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	44	2	2.10859	2.356	2.60341	0.0275785	0.0272722	0.136494	0.123904
chr6	99423017	99423116	3166125	0	-	0.363636	(0.35,0.378]	chr6	295334	62	INTRON	INTRON	PNISR	ENSG00000132424.17	ENST00000681615.1:ENST00000369239.10:ENST00000647811.1:ENST00000481229.2:ENST00000679525.1:ENST00000681611.1:ENST00000438806.5:ENST00000478777.5:ENST00000492294.5:ENST00000498075.1:ENST00000466057.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	44	2	2.10859	2.356	2.60341	0.0275785	0.0272722	0.136494	0.123904
chr1	162525741	162525841	238278	0	+	0.37	(0.35,0.378]	chr1	28688	33	UTR3	UTR3:EXON_MRNA	UHMK1	ENSG00000152332.16	ENST00000545294.5:ENST00000538489.5:ENST00000489294.2	protein_coding	protein_coding	protein_coding	protein_coding	11	138	2	1.97779	2.355995	2.7342	0.00252327	0.00125312	0.0465056	0.0323608
chr14	101871543	101871643	5819611	0	+	0.34	(0.32,0.35]	chr14	551879	143	INTRON	INTRON	PPP2R5C	ENSG00000078304.20	ENST00000694906.1:ENST00000422945.6:ENST00000328724.9:ENST00000350249.7:ENST00000557621.5:ENST00000556307.5:ENST00000553730.5:ENST00000334743.9:ENST00000445439.7:ENST00000557095.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	85	2	1.29171	2.355985	3.42026	0.0508785	0.00219805	0.176209	0.0417893
chr4	65343	65442	1905410	0	+	0.323232	(0.32,0.35]	chr4	191003	48	INTRON	INTRON	ZNF595	ENSG00000272602.6	ENST00000608255.2:ENST00000609518.5:ENST00000509152.3:ENST00000610261.6	protein_coding	protein_coding	protein_coding	protein_coding	3	47	2	2.07985	2.355975	2.6321	0.0303092	0.0268	0.143025	0.123349
chr7	111222907	111223007	3620711	0	-	0.33	(0.32,0.35]	chr7	337093	2590	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	47	2	2.07985	2.355975	2.6321	0.0303092	0.0268	0.143025	0.123349
chr7	127958304	127958404	3405484	0	+	0.33	(0.32,0.35]	chr7	318177	87	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000486037.1:ENST00000484767.5:ENST00000492840.1:ENST00000470723.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	47	2	2.07985	2.355975	2.6321	0.0303092	0.0268	0.143025	0.123349
chr2	15535335	15535432	1072902	0	-	0.463918	(0.44,0.476]	chr2	114447	3	INTRON	INTRON	NBAS	ENSG00000151779.13	ENST00000281513.10	protein_coding	protein_coding	protein_coding	protein_coding	7	84	2	1.70763	2.3559099999999997	3.00419	0.0190437	0.00110055	0.118994	0.0304914
chr1	11022904	11022988	24667	0	+	0.345238	(0.32,0.35]	chr1	2604	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TARDBP	ENSG00000120948.19	ENST00000639083.1:ENST00000639599.1:ENST00000629725.2:ENST00000240185.8:ENST00000614757.4:ENST00000473869.5:ENST00000315091.7:ENST00000616545.4:ENST00000621790.4:ENST00000649624.1:ENST00000622057.4:ENST00000617172.4:ENST00000611963.4:ENST00000619555.4:ENST00000620632.4:ENST00000610369.4:ENST00000614494.1:ENST00000611136.4:ENST00000477447.6:ENST00000612542.1:ENST00000620505.1:ENST00000621573.1:ENST00000611008.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	106	2	2.27097	2.35577	2.44057	0.00466047	0.00347642	0.0600108	0.0540643
chr1	149884742	149884837	549577	0	-	0.463158	(0.44,0.476]	chr1	64526	4	UTR3	UTR3:EXON_MRNA	H2BC21	ENSG00000184678.11	ENST00000369155.4	protein_coding	protein_coding	protein_coding	protein_coding	7	68	2	1.5358	2.35576	3.17572	0.0263135	0.00427037	0.133676	0.0573912
chr9	124413158	124413241	4346636	0	-	0.216867	[0,0.28]	chr9	399187	3	INTRON	INTRON	PSMB7	ENSG00000136930.13	ENST00000259457.8:ENST00000498485.5:ENST00000441097.1:ENST00000466951.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	63	2	2.27384	2.3557249999999996	2.43761	0.0423864	0.0233847	0.161744	0.11839
chr13	19715681	19715781	5552267	0	-	0.42	(0.408,0.44]	chr13	530696	57	INTRON	INTRON	PSPC1	ENSG00000121390.19	ENST00000471658.5:ENST00000492741.5:ENST00000635562.1:ENST00000338910.9:ENST00000619300.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	126	2	2.3014	2.355715	2.41003	0.00211327	8.86465e-4	0.0415897	0.0271952
chr17	76727657	76727757	6677426	0	+	0.36	(0.35,0.378]	chr17	652154	3	SS5_PROX	SS5_PROX:INTRON	METTL23	ENSG00000181038.14	ENST00000615984.4:ENST00000589977.5:ENST00000341249.11:ENST00000591571.5:ENST00000592849.5:ENST00000588783.5:ENST00000586738.5:ENST00000588563.5:ENST00000588302.5:ENST00000586752.5:ENST00000590964.5:ENST00000588822.1:ENST00000586200.1	protein_coding	protein_coding	protein_coding	protein_coding	4	54	2	1.6599	2.3556299999999997	3.05136	0.0545616	0.00578894	0.165292	0.0684334
chr20	32393821	32393920	7256181	0	+	0.424242	(0.408,0.44]	chr20	737076	214	INTRON	INTRON	ASXL1	ENSG00000171456.21	ENST00000651418.1:ENST00000375687.10:ENST00000613218.4:ENST00000644587.1:ENST00000620121.4:ENST00000646985.1:ENST00000643168.1:ENST00000306058.9:ENST00000645688.1:ENST00000470145.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	66	2	2.3494	2.355625	2.36185	0.0133164	0.00462504	0.094512	0.062717
chr16	4363685	4363775	6436827	0	-	0.422222	(0.408,0.44]	chr16	619757	6	INTRON	INTRON	CORO7	ENSG00000262246.6	ENST00000251166.9:ENST00000571227.5:ENST00000537233.6:ENST00000574025.5:ENST00000575714.5:ENST00000574311.5:ENST00000576437.5:ENST00000573773.5:ENST00000571756.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	49	2	1.93002	2.35562	2.78122	0.022095	0.015812	0.123903	0.101453
chr19	8014654	8014753	7010297	0	+	0.414141	(0.408,0.44]	chr19	696049	55	INTRON	INTRON	ENSG00000267939	ENSG00000267939.1	ENST00000599756.1	lncRNA	lncRNA	lncRNA	lncRNA	4	49	2	1.93002	2.35562	2.78122	0.022095	0.015812	0.123903	0.101453
chr7	152827813	152827913	3451209	0	+	0.44	(0.408,0.44]	chr7	322567	23	INTRON	INTRON	ACTR3B	ENSG00000133627.18	ENST00000377776.7:ENST00000256001.13:ENST00000397282.2:ENST00000479402.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	49	2	1.93002	2.35562	2.78122	0.022095	0.015812	0.123903	0.101453
chr16	89323151	89323250	6541905	0	-	0.515152	(0.476,0.515]	chr16	634203	29	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000647238.1:ENST00000563291.1:ENST00000566858.5:ENST00000644045.1:ENST00000643147.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	70	2	1.68092	2.355595	3.03027	0.0474026	9.53446e-4	0.169265	0.0282335
chr2	15511550	15511650	1072664	0	-	0.34	(0.32,0.35]	chr2	114440	2	SS3_PROX	SS3_PROX:INTRON	NBAS	ENSG00000151779.13	ENST00000281513.10	protein_coding	protein_coding	protein_coding	protein_coding	8	108	2	2.04813	2.355575	2.66302	0.00542632	0.00362627	0.0645052	0.055479
chr6	34366167	34366267	3084509	0	-	0.44	(0.408,0.44]	chr6	288633	238	INTRON	INTRON	NUDT3:RPS10-NUDT3	ENSG00000272325.2:ENSG00000270800.3	ENST00000607016.2:ENST00000639725.1:ENST00000639877.1:ENST00000605528.2	protein_coding	protein_coding	protein_coding	protein_coding	5	67	2	1.69172	2.35557	3.01942	0.0486032	7.74413e-4	0.153946	0.0256083
chr1	193063094	193063193	284296	0	+	0.383838	(0.378,0.408]	chr1	32673	25	INTRON	INTRON	RO60	ENSG00000116747.13	ENST00000432079.5:ENST00000400968.7:ENST00000415442.2:ENST00000460715.2:ENST00000506303.1:ENST00000367446.7:ENST00000367443.5:ENST00000367444.7:ENST00000367445.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	42	2	2.17608	2.355555	2.53503	0.0319942	0.0218783	0.13174	0.123836
chr17	35649929	35650029	6600177	0	+	0.38	(0.378,0.408]	chr17	642300	76	INTRON	INTRON	AP2B1	ENSG00000006125.18	ENST00000616784.4:ENST00000621914.4:ENST00000620039.4:ENST00000616681.4:ENST00000621668.4:ENST00000610402.5:ENST00000612035.4:ENST00000614600.4:ENST00000612116.5:ENST00000618940.4:ENST00000619183.1:ENST00000588116.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	42	2	2.17608	2.355555	2.53503	0.0319942	0.0218783	0.13174	0.123836
chr2	144503461	144503561	1241642	0	-	0.42	(0.408,0.44]	chr2	131741	53	INTRON	INTRON	ZEB2	ENSG00000169554.23	ENST00000636471.1:ENST00000627532.3:ENST00000638128.1:ENST00000637304.1:ENST00000636179.1:ENST00000419938.5:ENST00000409487.7:ENST00000636732.2:ENST00000636026.2:ENST00000675069.1:ENST00000689298.1:ENST00000539609.7:ENST00000558170.6:ENST00000303660.8:ENST00000427902.5:ENST00000637267.2:ENST00000392861.6:ENST00000431672.4:ENST00000409211.5:ENST00000465308.5:ENST00000434448.5:ENST00000472146.5:ENST00000461784.3:ENST00000476394.5:ENST00000637591.2:ENST00000479735.1:ENST00000453352.5:ENST00000435831.5:ENST00000444559.5:ENST00000630572.2:ENST00000484313.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	66	2	2.17784	2.355485	2.53313	0.00916282	0.00739595	0.0855292	0.074277
chr18	36038216	36038316	6963250	0	-	0.57	(0.515,0.57]	chr18	689069	40	INTRON	INTRON	RPRD1A	ENSG00000141425.18	ENST00000399022.9:ENST00000590898.5:ENST00000357384.8:ENST00000588737.5:ENST00000589050.1:ENST00000592674.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:nonsense_mediated_decay	4	49	2	2.03361	2.35547	2.67733	0.0325854	0.00366712	0.145164	0.0535094
chr7	133060651	133060751	3645675	0	-	0.52	(0.515,0.57]	chr7	338880	87	INTRON	INTRON	CHCHD3	ENSG00000106554.13	ENST00000262570.10:ENST00000448878.6:ENST00000423635.5:ENST00000481152.2:ENST00000457942.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	49	2	2.03361	2.35547	2.67733	0.0325854	0.00366712	0.145164	0.0535094
chr19	898139	898239	7110777	0	-	0.43	(0.408,0.44]	chr19	714142	2	INTRON	INTRON	R3HDM4	ENSG00000198858.10	ENST00000589428.5:ENST00000361574.10:ENST00000587975.2:ENST00000591829.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	49	2	1.75791	2.355435	2.95296	0.0378795	0.00929354	0.157034	0.0817766
chr7	92006132	92006232	3351680	0	+	0.43	(0.408,0.44]	chr7	312240	25	INTRON	INTRON	AKAP9	ENSG00000127914.19	ENST00000680534.1:ENST00000680513.1:ENST00000680072.1:ENST00000679821.1:ENST00000679554.1:ENST00000356239.8:ENST00000679521.1:ENST00000680181.1:ENST00000681722.1:ENST00000680766.1:ENST00000679448.1:ENST00000681412.1:ENST00000680047.1:ENST00000679474.1:ENST00000680952.1:ENST00000679457.1:ENST00000679722.1:ENST00000680074.1:ENST00000493453.1:ENST00000674381.2:ENST00000359028.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	49	2	1.75791	2.355435	2.95296	0.0378795	0.00929354	0.157034	0.0817766
chr3	47433829	47433928	1682432	0	-	0.393939	(0.378,0.408]	chr3	171861	48	INTRON	INTRON	SCAP	ENSG00000114650.21	ENST00000265565.10:ENST00000441517.6:ENST00000320017.10:ENST00000648151.1:ENST00000416208.5:ENST00000416847.5:ENST00000495603.2:ENST00000420588.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	42	2	2.04292	2.355385	2.66785	0.0326035	0.0224639	0.145164	0.11692
chr5	306860	306960	2312975	0	+	0.4	(0.378,0.408]	chr5	223724	1	SS5_PROX	SS5_PROX:INTRON	PDCD6	ENSG00000249915.9	ENST00000614778.4:ENST00000618970.4:ENST00000513582.5:ENST00000264933.9:ENST00000505221.5:ENST00000507528.5:ENST00000505526.1:ENST00000507473.1:ENST00000511482.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	42	2	2.04292	2.355385	2.66785	0.0326035	0.0224639	0.145164	0.11692
chr14	101823652	101823748	5819123	0	+	0.53125	(0.515,0.57]	chr14	551849	1	EXON_LNCRNA	EXON_LNCRNA:SS3_PROX:INTRON	PPP2R5C	ENSG00000078304.20	ENST00000694906.1:ENST00000422945.6:ENST00000554442.5:ENST00000328724.9:ENST00000554504.1:ENST00000553890.1:ENST00000350249.7:ENST00000557621.5:ENST00000556946.1:ENST00000556307.5:ENST00000553730.5:ENST00000557714.1:ENST00000334743.9:ENST00000445439.7:ENST00000557095.5:ENST00000556493.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	56	2	2.22166	2.35534	2.48902	0.00760558	0.00735516	0.0765982	0.0749571
chr7	72917114	72917213	3330170	0	+	0.333333	(0.32,0.35]	chr7	309571	29	INTRON	INTRON	POM121	ENSG00000196313.13	ENST00000627934.3:ENST00000395270.5	protein_coding	protein_coding	protein_coding	protein_coding	4	57	2	2.02133	2.35527	2.68921	0.0230336	0.017146	0.118056	0.111072
chr16	28952704	28952801	6334820	0	+	0.412371	(0.408,0.44]	chr16	606661	1	INTRON	INTRON	NFATC2IP	ENSG00000176953.13	ENST00000564978.5:ENST00000320805.9:ENST00000562977.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	52	2	1.96534	2.35526	2.74518	0.0216499	0.0152229	0.11491	0.108535
chr19	3371250	3371349	6999672	0	+	0.434343	(0.408,0.44]	chr19	694167	42	INTRON	INTRON	NFIC	ENSG00000141905.19	ENST00000641145.1:ENST00000589123.5:ENST00000395111.7:ENST00000586919.5:ENST00000341919.7:ENST00000443272.3:ENST00000590282.5	protein_coding	protein_coding	protein_coding	protein_coding	4	52	2	1.96534	2.35526	2.74518	0.0216499	0.0152229	0.11491	0.108535
chr6	117681770	117681870	2946861	0	+	0.42	(0.408,0.44]	chr6	277395	53	INTRON	INTRON	NUS1	ENSG00000153989.8	ENST00000368494.4	protein_coding	protein_coding	protein_coding	protein_coding	5	67	2	2.15938	2.3552049999999998	2.55103	0.011260300000000001	0.00587353	0.0884004	0.0690758
chr10	24720044	24720143	4581910	0	-	0.333333	(0.32,0.35]	chr10	422204	53	INTRON	INTRON	ARHGAP21	ENSG00000107863.20	ENST00000612832.4:ENST00000396432.7:ENST00000376410.7:ENST00000446003.5:ENST00000476499.1:ENST00000416305.1:ENST00000472150.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	51	2	2.30731	2.355195	2.40308	0.0417732	0.0176772	0.161736	0.10525
chr16	85576443	85576543	6415596	0	+	0.55	(0.515,0.57]	chr16	615470	197	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	10	107	2	2.06367	2.3551450000000003	2.64662	0.00266204	5.1273e-4	0.0476185	0.0208667
chr2	61393359	61393459	1129773	0	-	0.46	(0.44,0.476]	chr2	121474	97	INTRON	INTRON	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000453133.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	90	2	2.29258	2.3550750000000003	2.41757	0.00417342	0.00279559	0.057064	0.0488779
chr11	46835437	46835537	4948658	0	-	0.35	(0.32,0.35]	chr11	463857	87	INTRON	INTRON	CKAP5	ENSG00000175216.15	ENST00000529230.6:ENST00000312055.9:ENST00000525248.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	59	2	2.2643	2.3550500000000003	2.4458	0.0425977	0.00712852	0.148082	0.0756118
chr19	46778374	46778474	7195317	0	-	0.52	(0.515,0.57]	chr19	728979	3	SS5_PROX	SS5_PROX:INTRON	SLC1A5	ENSG00000105281.12	ENST00000542575.6:ENST00000594991.5:ENST00000434726.6:ENST00000412532.6:ENST00000593713.1	protein_coding	protein_coding	protein_coding	protein_coding	9	98	2	2.19285	2.3550500000000003	2.51725	0.00258921	8.36453e-4	0.0452934	0.0263691
chr8	70607056	70607146	3967191	0	-	0.344444	(0.32,0.35]	chr8	363968	3	UTR5	UTR5:EXON_MRNA:INTRON	TRAM1	ENSG00000067167.8	ENST00000262213.7:ENST00000521425.5:ENST00000521049.5:ENST00000520700.1:ENST00000518678.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	59	2	2.2643	2.3550500000000003	2.4458	0.0425977	0.00712852	0.148082	0.0756118
chr22	41157508	41157608	7522165	0	+	0.42	(0.408,0.44]	chr22	768617	1	SS5_PROX	SS5_PROX:INTRON	EP300	ENSG00000100393.14	ENST00000263253.9:ENST00000674155.1:ENST00000635691.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	57	2	1.92871	2.354965	2.78122	0.015812	0.0127189	0.101453	0.0986242
chr3	11643617	11643716	1614219	0	-	0.393939	(0.378,0.408]	chr3	166697	2	UTR5	UTR5:EXON_MRNA:INTRON	VGLL4	ENSG00000144560.16	ENST00000430365.7:ENST00000273038.7:ENST00000426568.5:ENST00000445411.5:ENST00000418000.5:ENST00000417206.6:ENST00000417466.5:ENST00000419541.4:ENST00000623028.1	protein_coding	protein_coding	protein_coding	protein_coding	11	147	2	2.17179	2.35496	2.53813	0.00178023	6.83968e-4	0.039274	0.0239468
chr10	116899016	116899115	4699421	0	-	0.333333	(0.32,0.35]	chr10	433605	121	INTRON	INTRON	SHTN1	ENSG00000187164.20	ENST00000355371.9:ENST00000615301.4:ENST00000260777.14:ENST00000497044.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	35	2	2.30673	2.354905	2.40308	0.0584434	0.0417732	0.167723	0.161736
chr12	68629761	68629861	5161395	0	+	0.35	(0.32,0.35]	chr12	488585	45	INTRON	INTRON	RAP1B	ENSG00000127314.18	ENST00000460800.5:ENST00000393436.9:ENST00000250559.14:ENST00000425247.6:ENST00000501412.2:ENST00000450214.6:ENST00000463493.5:ENST00000537460.5:ENST00000341355.9:ENST00000538283.5:ENST00000541167.5:ENST00000422358.6:ENST00000489473.6:ENST00000545270.5:ENST00000538980.5:ENST00000543393.5:ENST00000542018.5:ENST00000540209.5:ENST00000378985.7:ENST00000453560.6:ENST00000534899.5:ENST00000542145.5:ENST00000539091.5:ENST00000535492.5:ENST00000540781.5:ENST00000485252.6:ENST00000538877.5:ENST00000541386.5:ENST00000543697.5:ENST00000545720.6:ENST00000541216.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	35	2	2.30673	2.354905	2.40308	0.0584434	0.0417732	0.167723	0.161736
chr15	40166882	40166982	6001306	0	+	0.33	(0.32,0.35]	chr15	570586	4	SS5_PROX	SS5_PROX:INTRON	BUB1B	ENSG00000156970.13	ENST00000560120.5:ENST00000559414.5:ENST00000412359.7:ENST00000558715.5:ENST00000287598.11	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	35	2	2.30673	2.354905	2.40308	0.0584434	0.0417732	0.167723	0.161736
chr15	87660078	87660178	6256155	0	-	0.35	(0.32,0.35]	chr15	596826	1167	INTRON	INTRON	ENSG00000259560	ENSG00000259560.2	ENST00000665121.1:ENST00000560439.1	lncRNA	lncRNA	lncRNA	lncRNA	2	35	2	2.30673	2.354905	2.40308	0.0584434	0.0417732	0.167723	0.161736
chr19	52567349	52567449	7095663	0	+	0.35	(0.32,0.35]	chr19	711379	30	INTRON	INTRON	ZNF701	ENSG00000167562.14	ENST00000478039.1	protein_coding	processed_transcript	protein_coding	processed_transcript	2	35	2	2.30673	2.354905	2.40308	0.0584434	0.0417732	0.167723	0.161736
chr2	87039224	87039324	1172098	0	-	0.35	(0.32,0.35]	chr2	125120	13	INTRON	INTRON	ANAPC1P2	ENSG00000285793.1:ENSG00000231259.5	ENST00000648819.1:ENST00000452554.3	lncRNA	lncRNA	lncRNA:unprocessed_pseudogene	lncRNA:unprocessed_pseudogene	2	35	2	2.30673	2.354905	2.40308	0.0584434	0.0417732	0.167723	0.161736
chr21	39184371	39184469	7464201	0	-	0.336735	(0.32,0.35]	chr21	760353	3	UTR3	UTR3:EXON_MRNA	BRWD1	ENSG00000185658.14	ENST00000333229.6	protein_coding	protein_coding	protein_coding	protein_coding	2	35	2	2.30673	2.354905	2.40308	0.0584434	0.0417732	0.167723	0.161736
chr5	31553781	31553879	2334184	0	+	0.346939	(0.32,0.35]	chr5	225326	10	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	C5orf22	ENSG00000082213.18	ENST00000510659.5:ENST00000325366.14:ENST00000504866.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	65	2	1.54741	2.35489	3.16237	0.0473733	0.00550276	0.169265	0.0648867
chr1	109583752	109583850	180516	0	+	0.469388	(0.44,0.476]	chr1	19814	8	INTRON	INTRON	GNAI3	ENSG00000065135.12	ENST00000369851.7	protein_coding	protein_coding	protein_coding	protein_coding	3	41	2	1.96602	2.35487	2.74372	0.0426807	0.0153007	0.148082	0.108569
chr7	6435481	6435581	3477866	0	-	0.46	(0.44,0.476]	chr7	325420	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	DAGLB	ENSG00000164535.15	ENST00000297056.11:ENST00000425398.6:ENST00000436575.5:ENST00000454738.5:ENST00000432248.1:ENST00000479922.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	41	2	1.96602	2.35487	2.74372	0.0426807	0.0153007	0.148082	0.108569
chr11	13689476	13689575	4742514	0	+	0.282828	(0.28,0.32]	chr11	439155	195	INTRON	INTRON	FAR1	ENSG00000197601.13	ENST00000354817.8:ENST00000532701.1	protein_coding	protein_coding	protein_coding	protein_coding	2	38	2	2.32871	2.35486	2.38101	0.0581621	0.0456017	0.167723	0.164236
chr15	42528520	42528620	6009942	0	+	0.29	(0.28,0.32]	chr15	572183	1	SS5_PROX	SS5_PROX:INTRON	SNAP23	ENSG00000092531.10	ENST00000563765.5:ENST00000349777.5:ENST00000249647.8:ENST00000564153.5:ENST00000566327.5:ENST00000566035.5:ENST00000568514.5:ENST00000397138.5:ENST00000563873.5:ENST00000563830.2:ENST00000568841.5:ENST00000563333.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	38	2	2.32871	2.35486	2.38101	0.0581621	0.0456017	0.167723	0.164236
chr6	30588199	30588297	2841040	0	+	0.285714	(0.28,0.32]	chr6	266966	11	INTRON	INTRON	ABCF1	ENSG00000204574.14	ENST00000376545.7:ENST00000441867.6:ENST00000326195.13:ENST00000475993.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	38	2	2.32871	2.35486	2.38101	0.0581621	0.0456017	0.167723	0.164236
chr7	128767955	128768055	3408671	0	+	0.32	(0.28,0.32]	chr7	318462	3	SS5_PROX	SS5_PROX:INTRON	CALU	ENSG00000128595.17	ENST00000535011.6:ENST00000542996.6:ENST00000249364.9:ENST00000449187.6:ENST00000479257.5:ENST00000493278.1	protein_coding	protein_coding	protein_coding	protein_coding	2	38	2	2.32871	2.35486	2.38101	0.0581621	0.0456017	0.167723	0.164236
chr12	54279304	54279402	5330891	0	-	0.479592	(0.476,0.515]	chr12	508638	8	EXON_LNCRNA	EXON_LNCRNA:INTRON	CBX5:ENSG00000289154	ENSG00000094916.16:ENSG00000289154.1	ENST00000209875.9:ENST00000618078.1:ENST00000692885.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA:processed_transcript	9	98	2	1.48564	2.354785	3.22393	0.0251821	3.84737e-4	0.133519	0.0182343
chr2	10672986	10673074	1066238	0	-	0.306818	(0.28,0.32]	chr2	113779	1	EXON_MRNA	EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NOL10	ENSG00000115761.17	ENST00000695464.1:ENST00000695470.1:ENST00000695467.1:ENST00000695468.1:ENST00000695469.1:ENST00000381685.10:ENST00000695471.1:ENST00000345985.7:ENST00000538384.5:ENST00000695472.1:ENST00000695473.1:ENST00000695475.1:ENST00000695476.1:ENST00000695477.1:ENST00000695478.1:ENST00000695479.1:ENST00000695480.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	133	2	2.17469	2.35472	2.53475	0.00493565	0.00257029	0.0612225	0.0466761
chr8	98627464	98627563	3998171	0	-	0.353535	(0.35,0.378]	chr8	366060	253	INTRON	INTRON	STK3	ENSG00000104375.17	ENST00000617590.1:ENST00000419617.7:ENST00000523601.5:ENST00000518582.5:ENST00000518165.5:ENST00000521649.5:ENST00000424861.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	44	2	2.17079	2.3546750000000003	2.53856	0.0326077	0.0225978	0.133687	0.124921
chr2	61462861	61462961	1130475	0	-	0.46	(0.44,0.476]	chr2	121499	417	INTRON	INTRON	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000453133.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	98	2	1.79674	2.3546300000000002	2.91252	0.00717907	0.00164027	0.0756118	0.0369207
chr10	68335310	68335410	4440791	0	+	0.39	(0.378,0.408]	chr10	409480	27	INTRON	INTRON	HNRNPH3	ENSG00000096746.18	ENST00000469172.5:ENST00000461310.5:ENST00000265866.12:ENST00000480987.5:ENST00000486854.5:ENST00000467249.1:ENST00000354695.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	22	284	2	2.06601	2.354585	2.64316	0.00103919	2.57157e-5	0.0293356	0.00399377
chr17	64525469	64525569	6662091	0	+	0.37	(0.35,0.378]	chr17	650239	3	SS3_PROX	SS3_PROX:INTRON	CEP95	ENSG00000258890.8	ENST00000556440.7:ENST00000553956.6:ENST00000577960.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	53	2	1.92704	2.35458	2.78212	0.0228255	0.0168532	0.125469	0.103549
chr10	96142754	96142854	4502324	0	+	0.37	(0.35,0.378]	chr10	414481	71	INTRON	INTRON	ZNF518A	ENSG00000177853.15	ENST00000614149.2:ENST00000488700.5:ENST00000624776.4:ENST00000539666.5:ENST00000563195.1:ENST00000316045.10	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	44	2	2.04358	2.3545249999999998	2.66547	0.0329533	0.0233639	0.145171	0.118323
chr17	51107069	51107169	6796880	0	-	0.37	(0.35,0.378]	chr17	671024	270	INTRON	INTRON	SPAG9	ENSG00000008294.22	ENST00000262013.12:ENST00000505279.5:ENST00000357122.8	protein_coding	protein_coding	protein_coding	protein_coding	3	44	2	2.04358	2.3545249999999998	2.66547	0.0329533	0.0233639	0.145171	0.118323
chr1	43775229	43775329	86764	0	+	0.47	(0.44,0.476]	chr1	11658	26	INTRON	INTRON	ST3GAL3	ENSG00000126091.21	ENST00000646096.1:ENST00000532911.6:ENST00000643597.1:ENST00000643886.1:ENST00000372372.7:ENST00000545417.5:ENST00000330208.6:ENST00000335430.10:ENST00000361400.9:ENST00000347631.8:ENST00000642331.1:ENST00000647237.1:ENST00000643252.1:ENST00000372374.7:ENST00000361392.9:ENST00000646109.1:ENST00000533997.6:ENST00000353126.8:ENST00000645640.1:ENST00000642934.1:ENST00000643283.1:ENST00000351035.8:ENST00000642949.1:ENST00000489897.6:ENST00000646971.1:ENST00000645142.1:ENST00000645705.1:ENST00000530154.5:ENST00000646027.1:ENST00000646069.1:ENST00000642504.1:ENST00000647148.1:ENST00000262915.8:ENST00000479383.6:ENST00000647482.1:ENST00000645394.1:ENST00000647128.1:ENST00000461066.6:ENST00000361746.9:ENST00000645034.1:ENST00000645165.1:ENST00000647134.1:ENST00000644195.1:ENST00000642194.1:ENST00000372368.7:ENST00000646686.1:ENST00000372366.6:ENST00000361812.9:ENST00000469715.6:ENST00000372369.5:ENST00000372367.5:ENST00000372365.5:ENST00000528371.5:ENST00000533212.5:ENST00000530581.5:ENST00000531816.1:ENST00000531993.6:ENST00000490541.6:ENST00000372362.6:ENST00000531451.5:ENST00000646416.1:ENST00000645117.1:ENST00000533933.6:ENST00000332628.11:ENST00000643813.1:ENST00000644922.1:ENST00000644287.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	76	2	1.7965	2.3545100000000003	2.91252	0.0205549	0.00164027	0.122348	0.0369207
chrX	44896085	44896185	7648831	0	+	0.55	(0.515,0.57]	chrX	782726	217	INTRON	INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000675440.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000621147.5:ENST00000475233.1:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	56	2	2.27116	2.354495	2.43783	0.00916404	0.00601759	0.0812949	0.0700813
chr17	46166643	46166742	6784606	0	-	0.30303	(0.28,0.32]	chr17	669232	94	INTRON	INTRON	KANSL1	ENSG00000120071.15	ENST00000574590.6:ENST00000572904.6:ENST00000432791.7:ENST00000575318.6:ENST00000638275.1:ENST00000262419.10:ENST00000648792.1:ENST00000639531.1:ENST00000639150.1:ENST00000639853.1:ENST00000571698.2:ENST00000639375.1:ENST00000638269.1:ENST00000576248.2:ENST00000639356.1:ENST00000574655.6:ENST00000639099.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	101	2	2.23223	2.35447	2.47671	0.0109124	0.00327955	0.0873034	0.0527031
chr6	99422617	99422717	3166121	0	-	0.53	(0.515,0.57]	chr6	295334	58	INTRON	INTRON	PNISR	ENSG00000132424.17	ENST00000681615.1:ENST00000369239.10:ENST00000647811.1:ENST00000481229.2:ENST00000679525.1:ENST00000681611.1:ENST00000438806.5:ENST00000478777.5:ENST00000492294.5:ENST00000498075.1:ENST00000466057.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	56	2	2.17039	2.35442	2.53845	0.00900252	0.00632226	0.0851009	0.0687526
chr1	120590083	120590183	535641	0	-	0.23	[0,0.28]	chr1	63034	105	INTRON	INTRON	PDE4DIPP2	ENSG00000275131.3	ENST00000612480.2	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	2	43	2	2.27119	2.3544	2.43761	0.070351	0.0423864	0.184298	0.161744
chr2	227343704	227343800	1025507	0	+	0.208333	[0,0.28]	chr2	109524	5	INTRON	INTRON	MFF	ENSG00000168958.20	ENST00000476924.5:ENST00000353339.7:ENST00000354503.10:ENST00000304593.14:ENST00000530359.5:ENST00000531278.5:ENST00000409565.5:ENST00000409616.5:ENST00000460756.5:ENST00000337110.11:ENST00000524634.5:ENST00000534203.5:ENST00000349901.11:ENST00000392059.5:ENST00000436791.1:ENST00000456345.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	43	2	2.27119	2.3544	2.43761	0.070351	0.0423864	0.184298	0.161744
chr21	38095625	38095720	7463840	0	-	0.273684	[0,0.28]	chr21	760291	4	INTRON	INTRON	DSCR4	ENSG00000184029.9	ENST00000398948.5:ENST00000328264.7:ENST00000482032.1	lncRNA	lncRNA	lncRNA	lncRNA	2	43	2	2.27119	2.3544	2.43761	0.070351	0.0423864	0.184298	0.161744
chr7	135626661	135626761	3429041	0	+	0.27	[0,0.28]	chr7	319801	3	SS5_PROX	SS5_PROX:INTRON	NUP205	ENSG00000155561.15	ENST00000285968.11:ENST00000607647.5:ENST00000477620.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	43	2	2.27119	2.3544	2.43761	0.070351	0.0423864	0.184298	0.161744
chr4	78810466	78810566	1981726	0	+	0.41	(0.408,0.44]	chr4	198463	334	INTRON	INTRON	BMP2K	ENSG00000138756.19	ENST00000389010.7:ENST00000502613.3:ENST00000502871.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	110	2	2.01032	2.35439	2.69846	0.00377558	0.00127877	0.0562562	0.0326395
chr2	157263527	157263627	896576	0	+	0.33	(0.32,0.35]	chr2	99276	36	INTRON	INTRON	GALNT5	ENSG00000136542.9	ENST00000259056.5	protein_coding	protein_coding	protein_coding	protein_coding	6	88	2	1.95408	2.354355	2.75463	0.0124054	0.00387748	0.0973643	0.0543578
chr22	20121186	20121282	7478627	0	+	0.520833	(0.515,0.57]	chr22	762785	17	INTRON	INTRON	RANBP1	ENSG00000099901.17	ENST00000435265.5:ENST00000432879.5:ENST00000430524.6:ENST00000402752.5:ENST00000488484.1:ENST00000331821.7:ENST00000411892.5:ENST00000416427.5:ENST00000421656.5:ENST00000423859.5:ENST00000418705.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	119	2	2.2568	2.35435	2.4519	0.00118386	5.82494e-4	0.0315575	0.0219289
chr22	19466772	19466872	7554770	0	-	0.48	(0.476,0.515]	chr22	772375	16	EXON_MRNA	EXON_MRNA:INTRON	UFD1	ENSG00000070010.19	ENST00000263202.15:ENST00000399523.5:ENST00000459854.5:ENST00000466373.1:ENST00000447868.5:ENST00000421968.6:ENST00000484101.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	13	153	2	1.85172	2.35427	2.85682	0.00430147	1.52104e-4	0.0577616	0.0106137
chr14	36794517	36794617	5874230	0	-	0.54	(0.515,0.57]	chr14	557997	349	INTRON	INTRON	SLC25A21	ENSG00000183032.12	ENST00000331299.6:ENST00000555449.5	protein_coding	protein_coding	protein_coding	protein_coding	4	42	2	1.94493	2.354235	2.76354	0.0204583	0.0147344	0.122204	0.0983813
chr4	139113332	139113431	2246702	0	-	0.535354	(0.515,0.57]	chr4	219568	106	INTRON	INTRON	ELF2	ENSG00000109381.21	ENST00000394235.6:ENST00000686138.1:ENST00000379550.5:ENST00000511184.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	42	2	1.94493	2.354235	2.76354	0.0204583	0.0147344	0.122204	0.0983813
chr6	149730721	149730819	3246807	0	-	0.408163	(0.378,0.408]	chr6	301671	32	INTRON	INTRON	NUP43	ENSG00000120253.14	ENST00000340413.7:ENST00000367404.8	protein_coding	protein_coding	protein_coding	protein_coding	11	141	2	2.00577	2.354235	2.7027	0.00279033	5.73191e-4	0.0488769	0.0221527
chr8	25448607	25448705	3926249	0	-	0.520408	(0.515,0.57]	chr8	359451	20	INTRON	INTRON	KCTD9	ENSG00000104756.16	ENST00000221200.9:ENST00000519665.5:ENST00000523140.5:ENST00000522493.5:ENST00000518067.5:ENST00000518997.5:ENST00000523294.5:ENST00000521458.5:ENST00000524217.1:ENST00000520405.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	42	2	1.94493	2.354235	2.76354	0.0204583	0.0147344	0.122204	0.0983813
chr1	246211425	246211525	677749	0	-	0.29	(0.28,0.32]	chr1	79733	178	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000453676.5:ENST00000462422.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	51	2	2.13651	2.3542300000000003	2.57195	0.0331711	0.0265696	0.134088	0.133994
chr12	871348	871448	5057379	0	+	0.32	(0.28,0.32]	chr12	477486	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	WNK1	ENSG00000060237.19	ENST00000315939.11:ENST00000340908.9:ENST00000535572.5:ENST00000537687.5:ENST00000530271.6:ENST00000675631.1:ENST00000676347.1:ENST00000545285.5:ENST00000535698.1:ENST00000674810.1:ENST00000574679.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	51	2	2.13651	2.3542300000000003	2.57195	0.0331711	0.0265696	0.134088	0.133994
chr12	76051153	76051248	5369865	0	-	0.294737	(0.28,0.32]	chr12	512261	1	INTRON	INTRON	NAP1L1	ENSG00000187109.15	ENST00000618691.5:ENST00000552056.5:ENST00000393263.7:ENST00000431879.7:ENST00000552147.5:ENST00000547773.5:ENST00000544816.5:ENST00000542344.5:ENST00000535020.6:ENST00000549596.5:ENST00000547993.5:ENST00000547969.5:ENST00000552342.5:ENST00000547529.6:ENST00000548044.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	51	2	2.13651	2.3542300000000003	2.57195	0.0331711	0.0265696	0.134088	0.133994
chr22	28579956	28580056	7571935	0	-	0.3	(0.28,0.32]	chr22	774287	1370	INTRON	INTRON	TTC28	ENSG00000100154.15	ENST00000397906.7	protein_coding	protein_coding	protein_coding	protein_coding	3	51	2	2.13651	2.3542300000000003	2.57195	0.0331711	0.0265696	0.134088	0.133994
chr2	70241742	70241842	1152400	0	-	0.45	(0.44,0.476]	chr2	123109	52	INTRON	INTRON	C2orf42:TIA1	ENSG00000115998.8:ENSG00000116001.17	ENST00000470096.1:ENST00000415783.6:ENST00000433529.7:ENST00000282574.8:ENST00000445587.5:ENST00000416149.6:ENST00000474809.6:ENST00000477044.6:ENST00000496452.5:ENST00000481650.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	49	2	2.03266	2.35419	2.67572	0.0212064	0.0155853	0.113017	0.109411
chr17	31952375	31952475	6595831	0	+	0.39	(0.378,0.408]	chr17	641554	43	INTRON	INTRON	SUZ12	ENSG00000178691.11	ENST00000322652.10:ENST00000580398.1	protein_coding	protein_coding	protein_coding	protein_coding	7	94	2	1.91906	2.354185	2.78931	0.0153989	6.20851e-4	0.100621	0.0223951
chr1	114773970	114774070	528694	0	-	0.29	(0.28,0.32]	chr1	62378	46	UTR3	UTR3:EXON_MRNA	SIKE1	ENSG00000052723.12	ENST00000060969.6:ENST00000369528.9	protein_coding	protein_coding	protein_coding	protein_coding	3	51	2	2.08149	2.354175	2.62686	0.031124	0.0289217	0.143644	0.1274
chrX	111694959	111695059	7702156	0	+	0.29	(0.28,0.32]	chrX	788221	49	INTRON	INTRON	ALG13	ENSG00000101901.12	ENST00000487141.5:ENST00000394780.8:ENST00000251943.8:ENST00000610588.4:ENST00000621367.4:ENST00000622997.3:ENST00000624161.3:ENST00000636363.1:ENST00000624881.3:ENST00000495283.5:ENST00000486353.5:ENST00000623144.3:ENST00000470971.5:ENST00000623148.3:ENST00000471924.5:ENST00000436609.5:ENST00000470704.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	51	2	2.08149	2.354175	2.62686	0.031124	0.0289217	0.143644	0.1274
chr16	16651782	16651881	6312383	0	+	0.484848	(0.476,0.515]	chr16	604112	29	INTRON	INTRON	ENSG00000260126	ENSG00000260126.2	ENST00000567465.2	lncRNA	lncRNA	lncRNA	lncRNA	15	199	2	2.19541	2.3541499999999997	2.51289	0.00155426	1.3528e-4	0.0364504	0.0106366
chr16	11903423	11903522	6446285	0	-	0.525253	(0.515,0.57]	chr16	621128	50	INTRON	INTRON	GSPT1	ENSG00000103342.13	ENST00000434724.7:ENST00000439887.6:ENST00000420576.6:ENST00000568849.5:ENST00000562169.1	protein_coding	protein_coding	protein_coding	protein_coding	6	71	2	2.00468	2.3541	2.70352	0.0166344	9.70997e-4	0.110511	0.0283239
chr15	85093172	85093271	6090055	0	+	0.444444	(0.44,0.476]	chr15	579554	16	INTRON	INTRON	PDE8A	ENSG00000073417.15	ENST00000310298.8:ENST00000557957.5:ENST00000394553.6:ENST00000339708.9:ENST00000478717.5:ENST00000485596.5:ENST00000559742.5:ENST00000559086.5:ENST00000560789.5:ENST00000557819.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	90	2	2.32184	2.3540900000000002	2.38634	0.00609071	0.0018045	0.0676501	0.039301
chr4	55420641	55420740	1960846	0	+	0.343434	(0.32,0.35]	chr4	196577	21	INTRON	INTRON	TMEM165	ENSG00000134851.13	ENST00000381334.10:ENST00000506198.5:ENST00000508404.5:ENST00000514904.5:ENST00000508561.5:ENST00000608091.1:ENST00000509575.1:ENST00000506103.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	86	2	1.50602	2.3540900000000002	3.20216	0.0248261	0.00480708	0.132101	0.0602209
chr6	33274014	33274112	2846792	0	+	0.44898	(0.44,0.476]	chr6	268612	9	INTRON	INTRON	RPS18	ENSG00000231500.7	ENST00000439602.7:ENST00000474973.5:ENST00000474626.5:ENST00000476222.5:ENST00000496813.5:ENST00000490191.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	11	152	2	2.02421	2.3540650000000003	2.68392	0.00536295	1.6586e-4	0.0663076	0.0118063
chrX	111705331	111705431	7702260	0	+	0.26	[0,0.28]	chrX	788221	153	INTRON	INTRON	ALG13	ENSG00000101901.12	ENST00000487141.5:ENST00000394780.8:ENST00000251943.8:ENST00000610588.4:ENST00000621367.4:ENST00000622997.3:ENST00000624161.3:ENST00000636363.1:ENST00000624881.3:ENST00000495283.5:ENST00000486353.5:ENST00000623144.3:ENST00000470971.5:ENST00000623148.3:ENST00000471924.5:ENST00000436609.5:ENST00000470704.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	90	2	1.62448	2.35404	3.0836	0.0302032	0.00940284	0.142761	0.0817766
chr7	150274752	150274852	3673162	0	-	0.32	(0.28,0.32]	chr7	340876	253	INTRON	INTRON	ACTR3C	ENSG00000106526.11	ENST00000478393.5:ENST00000683684.1:ENST00000252071.8	protein_coding	protein_coding	protein_coding	protein_coding	6	97	2	1.89468	2.35401	2.81334	0.019774	0.00248627	0.109608	0.0461207
chr22	21420857	21420957	7481207	0	+	0.64	(0.57,1]	chr22	763208	1	SS5_PROX	SS5_PROX:INTRON	HIC2	ENSG00000169635.10	ENST00000407464.7:ENST00000407598.2	protein_coding	protein_coding	protein_coding	protein_coding	9	52	2	1.35469	2.3539849999999998	3.35328	0.039905	8.52328e-5	0.161534	0.00825602
chr1	42178519	42178618	430851	0	-	0.555556	(0.515,0.57]	chr1	52259	21	UTR3	UTR3:EXON_MRNA	FOXJ3	ENSG00000198815.9	ENST00000372573.5:ENST00000372572.5:ENST00000372571.5:ENST00000361776.5:ENST00000545068.5:ENST00000361346.6	protein_coding	protein_coding	protein_coding	protein_coding	4	42	2	1.67758	2.353975	3.03037	0.0471728	0.00608732	0.168737	0.0676501
chr21	33547910	33548007	7397475	0	+	0.56701	(0.515,0.57]	chr21	753513	10	INTRON	INTRON	SON	ENSG00000159140.22	ENST00000356577.10:ENST00000381692.6:ENST00000695559.1:ENST00000455528.5:ENST00000300278.8:ENST00000381679.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	57	2	1.94493	2.353965	2.763	0.0204583	0.00257143	0.122204	0.045134
chr10	63426634	63426734	4634998	0	-	0.42	(0.408,0.44]	chr10	426236	458	INTRON	INTRON	JMJD1C	ENSG00000171988.20	ENST00000399262.7:ENST00000633035.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	41	2	1.74775	2.35391	2.96007	0.0735403	0.00753901	0.190238	0.0773151
chr7	17939583	17939683	3496558	0	-	0.44	(0.408,0.44]	chr7	326520	319	INTRON	INTRON	SNX13	ENSG00000071189.21	ENST00000428135.7:ENST00000611725.4:ENST00000409076.6:ENST00000444712.5:ENST00000482558.5:ENST00000409604.1:ENST00000475800.5:ENST00000474067.5:ENST00000471744.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	41	2	1.74775	2.35391	2.96007	0.0735403	0.00753901	0.190238	0.0773151
chr12	121347403	121347502	5437137	0	-	0.434343	(0.408,0.44]	chr12	519922	5	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ANAPC5	ENSG00000089053.13	ENST00000261819.8:ENST00000541887.5:ENST00000534976.5:ENST00000441917.6:ENST00000541652.5:ENST00000544442.5:ENST00000536416.5:ENST00000539871.1:ENST00000536837.1:ENST00000545801.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	85	2	1.64062	2.3539	3.06718	0.0557275	1.33986e-4	0.165463	0.00998237
chr19	807902	807993	6992211	0	+	0.351648	(0.35,0.378]	chr19	692263	1	EXON_MRNA	EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PTBP1	ENSG00000011304.22	ENST00000635647.1:ENST00000627714.2:ENST00000676227.1:ENST00000677277.1:ENST00000349038.8:ENST00000586944.5:ENST00000356948.11:ENST00000394601.8:ENST00000587191.3:ENST00000679114.1:ENST00000350092.8:ENST00000585535.2:ENST00000621737.4:ENST00000585956.5:ENST00000585932.5:ENST00000585856.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	129	2	1.88704	2.35386	2.82068	0.00509272	0.00084924900000000005	0.0646039	0.0267232
chr22	24541912	24542011	7563545	0	-	0.424242	(0.408,0.44]	chr22	773775	16	UTR3	UTR3:EXON_MRNA:INTRON	GUCD1	ENSG00000138867.17	ENST00000621833.4:ENST00000407471.7:ENST00000435822.6:ENST00000398245.8:ENST00000490922.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	92	2	2.08621	2.35384	2.62147	0.00683843	0.00180223	0.0748032	0.0382461
chr1	35928844	35928943	71121	0	+	0.414141	(0.408,0.44]	chr1	9124	93	UTR3	UTR3:EXON_MRNA	AGO1	ENSG00000092847.13	ENST00000373204.6:ENST00000674426.1	protein_coding	protein_coding	protein_coding	protein_coding	3	41	2	1.81572	2.353825	2.89193	0.0626779	0.00950364	0.175915	0.0863579
chr17	4946127	4946219	6713066	0	-	0.434783	(0.408,0.44]	chr17	657987	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PFN1	ENSG00000108518.8	ENST00000225655.6:ENST00000574872.1	protein_coding	protein_coding	protein_coding	protein_coding	3	41	2	1.81572	2.353825	2.89193	0.0626779	0.00950364	0.175915	0.0863579
chr3	128624453	128624550	1813735	0	-	0.412371	(0.408,0.44]	chr3	182278	17	INTRON	INTRON	RPN1	ENSG00000163902.12	ENST00000296255.8:ENST00000497289.5	protein_coding	protein_coding	protein_coding	protein_coding	3	41	2	1.81572	2.353825	2.89193	0.0626779	0.00950364	0.175915	0.0863579
chr7	102652680	102652780	3589047	0	-	0.44	(0.408,0.44]	chr7	335089	100	INTRON	INTRON	ENSG00000267645	ENSG00000267645.5	ENST00000476151.5	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	3	41	2	1.81572	2.353825	2.89193	0.0626779	0.00950364	0.175915	0.0863579
chr1	17414314	17414412	384726	0	-	0.438776	(0.408,0.44]	chr1	45459	2	INTRON	INTRON	RCC2	ENSG00000179051.14	ENST00000375436.9:ENST00000375433.3	protein_coding	protein_coding	protein_coding	protein_coding	4	55	2	2.31565	2.353635	2.39162	0.0154718	0.0105837	0.100909	0.0911864
chr10	100209294	100209394	4678415	0	-	0.51	(0.476,0.515]	chr10	431589	3	SS5_PROX	SS5_PROX:INTRON	CHUK	ENSG00000213341.11	ENST00000370397.8	protein_coding	protein_coding	protein_coding	protein_coding	2	30	2	2.13854	2.3536099999999998	2.56868	0.0776563	0.0256676	0.196285	0.133676
chr16	88704496	88704594	6539428	0	-	0.489796	(0.476,0.515]	chr16	633807	10	INTRON	INTRON	RNF166	ENSG00000158717.11	ENST00000562544.1:ENST00000312838.9:ENST00000567844.1	protein_coding	protein_coding	protein_coding	protein_coding	2	30	2	2.13854	2.3536099999999998	2.56868	0.0776563	0.0256676	0.196285	0.133676
chr17	35665287	35665387	6600336	0	+	0.48	(0.476,0.515]	chr17	642324	53	INTRON	INTRON	AP2B1	ENSG00000006125.18	ENST00000621914.4:ENST00000620039.4:ENST00000616681.4:ENST00000621668.4:ENST00000610402.5:ENST00000612035.4:ENST00000614600.4:ENST00000612116.5:ENST00000618940.4:ENST00000619183.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	30	2	2.13854	2.3536099999999998	2.56868	0.0776563	0.0256676	0.196285	0.133676
chr19	47154027	47154125	7084110	0	+	0.510204	(0.476,0.515]	chr19	708774	6	INTRON	INTRON	SAE1	ENSG00000142230.13	ENST00000594144.5:ENST00000597808.5:ENST00000413379.7:ENST00000600706.5:ENST00000270225.12:ENST00000598840.5:ENST00000414294.6:ENST00000660039.1:ENST00000664120.1:ENST00000596995.1:ENST00000392776.3:ENST00000659110.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	30	2	2.13854	2.3536099999999998	2.56868	0.0776563	0.0256676	0.196285	0.133676
chr2	174139633	174139732	1269762	0	-	0.50505	(0.476,0.515]	chr2	134275	155	INTRON	INTRON	OLA1	ENSG00000138430.16	ENST00000284719.8:ENST00000344357.9:ENST00000428402.6:ENST00000409546.5:ENST00000429575.1	protein_coding	protein_coding	protein_coding	protein_coding	2	30	2	2.13854	2.3536099999999998	2.56868	0.0776563	0.0256676	0.196285	0.133676
chr3	177083898	177083997	1871299	0	-	0.515152	(0.476,0.515]	chr3	187380	36	INTRON	INTRON	TBL1XR1	ENSG00000177565.18	ENST00000457928.7:ENST00000430069.5:ENST00000673974.1:ENST00000631253.2:ENST00000352800.10:ENST00000422442.6:ENST00000428970.5:ENST00000424913.5:ENST00000437738.5:ENST00000431421.5:ENST00000635794.1:ENST00000630796.2:ENST00000450267.5:ENST00000630833.2:ENST00000431674.5:ENST00000422066.5:ENST00000443315.5:ENST00000627825.2:ENST00000427349.5:ENST00000413084.5:ENST00000637137.1:ENST00000491623.2:ENST00000637544.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	30	2	2.13854	2.3536099999999998	2.56868	0.0776563	0.0256676	0.196285	0.133676
chr5	55952851	55952948	2623177	0	-	0.494845	(0.476,0.515]	chr5	249223	1	INTRON	INTRON	IL6ST	ENSG00000134352.20	ENST00000381298.7:ENST00000336909.9:ENST00000381287.8:ENST00000651614.1:ENST00000503773.6:ENST00000502326.7:ENST00000381294.7:ENST00000381293.6:ENST00000381286.7:ENST00000522633.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	30	2	2.13854	2.3536099999999998	2.56868	0.0776563	0.0256676	0.196285	0.133676
chr7	149478454	149478553	3671640	0	-	0.494949	(0.476,0.515]	chr7	340777	3	INTRON	INTRON	ZNF746	ENSG00000181220.18	ENST00000644635.1:ENST00000340622.8:ENST00000458143.7:ENST00000685153.1	protein_coding	protein_coding	protein_coding	protein_coding	2	30	2	2.13854	2.3536099999999998	2.56868	0.0776563	0.0256676	0.196285	0.133676
chrX	118990860	118990960	7711000	0	+	0.51	(0.476,0.515]	chrX	789063	3	SS5_PROX	SS5_PROX:INTRON	LONRF3	ENSG00000175556.17	ENST00000304778.11:ENST00000371628.8:ENST00000481285.5:ENST00000439603.5:ENST00000422289.3:ENST00000472173.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	30	2	2.13854	2.3536099999999998	2.56868	0.0776563	0.0256676	0.196285	0.133676
chr1	65312935	65313035	136124	0	+	0.52	(0.515,0.57]	chr1	15352	26	INTRON	INTRON	DNAJC6	ENSG00000116675.16	ENST00000463018.5:ENST00000494710.6:ENST00000263441.11:ENST00000395325.7:ENST00000483402.1:ENST00000371069.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	90	2	2.16051	2.35353	2.54655	0.0046825	8.595e-4	0.0631419	0.0267428
chr14	101829904	101830004	5819190	0	+	0.38	(0.378,0.408]	chr14	551860	46	INTRON	INTRON	PPP2R5C	ENSG00000078304.20	ENST00000694906.1:ENST00000422945.6:ENST00000554442.5:ENST00000328724.9:ENST00000553890.1:ENST00000350249.7:ENST00000557621.5:ENST00000556946.1:ENST00000556307.5:ENST00000553730.5:ENST00000557714.1:ENST00000334743.9:ENST00000445439.7:ENST00000557095.5:ENST00000556493.1:ENST00000553842.1:ENST00000556373.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	57	2	2.00398	2.3534800000000002	2.70298	0.0393906	0.00325723	0.143072	0.0524329
chr2	70240351	70240451	1152386	0	-	0.34	(0.32,0.35]	chr2	123109	38	INTRON	INTRON	C2orf42:TIA1	ENSG00000115998.8:ENSG00000116001.17	ENST00000470096.1:ENST00000415783.6:ENST00000433529.7:ENST00000282574.8:ENST00000445587.5:ENST00000416149.6:ENST00000474809.6:ENST00000477044.6:ENST00000496452.5:ENST00000481650.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	47	2	2.01768	2.353445	2.68921	0.0361337	0.0230336	0.152563	0.118056
chr2	135063979	135064079	872786	0	+	0.33	(0.32,0.35]	chr2	97740	13	INTRON	INTRON	RAB3GAP1	ENSG00000115839.19	ENST00000539493.3:ENST00000688088.1:ENST00000693554.1:ENST00000690785.1:ENST00000689880.1:ENST00000264158.13:ENST00000690208.1:ENST00000691478.1:ENST00000686114.1:ENST00000685967.1:ENST00000442034.5:ENST00000687199.1:ENST00000691339.1:ENST00000688182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	47	2	2.01768	2.353445	2.68921	0.0361337	0.0230336	0.152563	0.118056
chr20	47223137	47223234	7348158	0	-	0.329897	(0.32,0.35]	chr20	749241	13	INTRON	INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000467200.6:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4	protein_coding	protein_coding	protein_coding	protein_coding	3	47	2	2.01768	2.353445	2.68921	0.0361337	0.0230336	0.152563	0.118056
chr7	157189791	157189890	3454460	0	+	0.525253	(0.515,0.57]	chr7	322957	6	INTRON	INTRON	UBE3C	ENSG00000009335.18	ENST00000348165.10	protein_coding	protein_coding	protein_coding	protein_coding	8	88	2	2.20213	2.35342	2.50471	0.00853365	4.33065e-4	0.0780043	0.0186938
chr17	67829128	67829228	6667737	0	+	0.28	[0,0.28]	chr17	650544	24	INTRON	INTRON	BPTF	ENSG00000171634.19	ENST00000306378.11:ENST00000544778.6:ENST00000321892.8:ENST00000342579.8:ENST00000644067.1:ENST00000424123.7	protein_coding	protein_coding	protein_coding	protein_coding	4	71	2	1.62313	2.353365	3.0836	0.0605286	0.00940284	0.191883	0.0817766
chr1	156331856	156331955	566645	0	-	0.50505	(0.476,0.515]	chr1	68009	64	INTRON	INTRON	CCT3	ENSG00000163468.15	ENST00000295688.8:ENST00000368258.7:ENST00000368259.6:ENST00000368262.7:ENST00000472765.6:ENST00000413555.5:ENST00000496684.6:ENST00000533194.5:ENST00000463132.5:ENST00000446905.5:ENST00000490221.5:ENST00000478640.6:ENST00000415548.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	30	2	2.3223	2.35336	2.38442	0.0519312	0.0417472	0.161736	0.159306
chr10	102333510	102333607	4513536	0	+	0.484536	(0.476,0.515]	chr10	415752	6	INTRON	INTRON	GBF1	ENSG00000107862.7	ENST00000676513.1:ENST00000676939.1:ENST00000677439.1:ENST00000677240.1:ENST00000677618.1:ENST00000679155.1:ENST00000679280.1:ENST00000678036.1:ENST00000678476.1:ENST00000678504.1:ENST00000677247.1:ENST00000677655.1:ENST00000678351.1:ENST00000679238.1:ENST00000677487.1:ENST00000677506.1:ENST00000678666.1:ENST00000676560.1:ENST00000673650.1:ENST00000674034.1:ENST00000369983.5:ENST00000679003.1:ENST00000678486.1:ENST00000676682.1:ENST00000676807.1:ENST00000676993.1:ENST00000678575.1:ENST00000677522.1:ENST00000678293.1:ENST00000679087.1:ENST00000677683.1:ENST00000676861.1:ENST00000677491.1:ENST00000677461.1:ENST00000677871.1:ENST00000677431.1:ENST00000677852.1:ENST00000678401.1:ENST00000677956.1:ENST00000678840.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	30	2	2.3223	2.35336	2.38442	0.0519312	0.0417472	0.161736	0.159306
chr11	46841826	46841925	4948722	0	-	0.50505	(0.476,0.515]	chr11	463857	151	INTRON	INTRON	CKAP5	ENSG00000175216.15	ENST00000529230.6:ENST00000312055.9:ENST00000525248.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	30	2	2.3223	2.35336	2.38442	0.0519312	0.0417472	0.161736	0.159306
chr16	16587386	16587486	6311736	0	+	0.49	(0.476,0.515]	chr16	604098	874	INTRON	INTRON	ENSG00000260126	ENSG00000260126.2	ENST00000567465.2	lncRNA	lncRNA	lncRNA	lncRNA	2	30	2	2.3223	2.35336	2.38442	0.0519312	0.0417472	0.161736	0.159306
chr2	17756646	17756745	706572	0	+	0.50505	(0.476,0.515]	chr2	81835	10	INTRON	INTRON	GEN1	ENSG00000178295.15	ENST00000317402.11:ENST00000381254.7:ENST00000524465.5:ENST00000532257.1	protein_coding	protein_coding	protein_coding	protein_coding	2	30	2	2.3223	2.35336	2.38442	0.0519312	0.0417472	0.161736	0.159306
chr4	25798609	25798708	2119975	0	-	0.494949	(0.476,0.515]	chr4	209416	77	INTRON	INTRON	SEL1L3	ENSG00000091490.11	ENST00000264868.9:ENST00000399878.8:ENST00000502949.5	protein_coding	protein_coding	protein_coding	protein_coding	2	30	2	2.3223	2.35336	2.38442	0.0519312	0.0417472	0.161736	0.159306
chr7	140036916	140037015	3658988	0	-	0.484848	(0.476,0.515]	chr7	339590	22	INTRON	INTRON	PARP12	ENSG00000059378.13	ENST00000263549.8:ENST00000473341.5:ENST00000488726.5:ENST00000489809.5:ENST00000491598.5:ENST00000470515.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	30	2	2.3223	2.35336	2.38442	0.0519312	0.0417472	0.161736	0.159306
chrX	21954829	21954929	7629997	0	+	0.49	(0.476,0.515]	chrX	781289	131	INTRON	INTRON	SMS	ENSG00000102172.16	ENST00000404933.7:ENST00000379404.5:ENST00000478094.1:ENST00000457085.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	30	2	2.3223	2.35336	2.38442	0.0519312	0.0417472	0.161736	0.159306
chr10	97223652	97223751	4674458	0	-	0.373737	(0.35,0.378]	chr10	430745	16	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ARHGAP19	ENSG00000213390.11	ENST00000492211.5:ENST00000358308.7:ENST00000358531.9:ENST00000487035.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	62	2	1.75561	2.3533299999999997	2.95105	0.0739399	0.00115843	0.190914	0.0313803
chr19	28530104	28530204	7166396	0	-	0.45	(0.44,0.476]	chr19	724189	619	INTRON	INTRON	ENSG00000283403:ENSG00000267243	ENSG00000283403.1:ENSG00000267243.6	ENST00000592347.5:ENST00000593065.5	lncRNA	lncRNA	lncRNA	lncRNA	10	126	2	2.26085	2.35332	2.44579	0.0039479	4.0259e-4	0.0548259	0.0180314
chr8	11824133	11824231	3702744	0	+	0.367347	(0.35,0.378]	chr8	343510	19	INTRON	INTRON	FDFT1	ENSG00000079459.13	ENST00000538689.4:ENST00000615631.4:ENST00000618539.4:ENST00000623368.3:ENST00000446331.6:ENST00000443614.6:ENST00000220584.9:ENST00000525607.5:ENST00000525283.5:ENST00000529464.5:ENST00000525900.5:ENST00000528812.5:ENST00000622850.2:ENST00000530664.5:ENST00000525954.5:ENST00000531249.2:ENST00000532266.5:ENST00000528643.5:ENST00000525777.5:ENST00000528729.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	74	2	1.53417	2.3533049999999998	3.17244	0.0271808	0.00487788	0.136494	0.0607461
chr3	9477269	9477368	1359741	0	+	0.474747	(0.44,0.476]	chr3	142827	13	UTR3	UTR3:EXON_MRNA:INTRON	SETD5	ENSG00000168137.20	ENST00000402198.7:ENST00000406341.5:ENST00000407969.5:ENST00000399686.6	protein_coding	protein_coding	protein_coding	protein_coding	10	118	2	1.79674	2.35327	2.9098	0.00717907	4.57573e-4	0.0756118	0.0197167
chr12	6570173	6570266	5259237	0	-	0.526882	(0.515,0.57]	chr12	500666	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	CHD4	ENSG00000111642.16	ENST00000645022.1:ENST00000544040.7:ENST00000544484.6:ENST00000357008.7:ENST00000647112.1:ENST00000642810.1:ENST00000642637.1:ENST00000642686.1:ENST00000645143.1:ENST00000647394.1:ENST00000643335.1:ENST00000643815.1:ENST00000647535.1:ENST00000646806.1:ENST00000644137.1:ENST00000642879.1:ENST00000646462.1:ENST00000644652.1:ENST00000645645.1:ENST00000642594.1:ENST00000646360.1:ENST00000646268.1:ENST00000645095.1:ENST00000644352.1:ENST00000645991.1:ENST00000642860.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	59	2	1.7492	2.35323	2.9572600000000002	0.0382504	0.00108918	0.15832	0.0303873
chr9	128271006	128271105	4358179	0	-	0.424242	(0.408,0.44]	chr9	400430	8	EXON_MRNA	EXON_MRNA:INTRON	GOLGA2	ENSG00000167110.19	ENST00000421699.8:ENST00000611957.5:ENST00000693185.1:ENST00000686291.1:ENST00000687179.1:ENST00000458730.3:ENST00000693047.1:ENST00000686884.1:ENST00000693180.1:ENST00000691040.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	154	2	2.14138	2.3531899999999997	2.565	0.00103673	7.37116e-4	0.0292734	0.0247924
chr1	227305604	227305704	651592	0	-	0.38	(0.378,0.408]	chr1	77110	405	INTRON	INTRON	CDC42BPA	ENSG00000143776.20	ENST00000366766.8:ENST00000366769.7:ENST00000334218.9:ENST00000366767.7:ENST00000366764.8:ENST00000478573.6:ENST00000682551.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	57	2	2.35103	2.3531500000000003	2.35527	0.014158	0.0121511	0.0963966	0.0959618
chr2	71113520	71113618	1154468	0	-	0.346939	(0.32,0.35]	chr2	123369	23	INTRON	INTRON	MCEE	ENSG00000124370.11	ENST00000413592.5:ENST00000244217.6:ENST00000462609.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	101	2	2.32039	2.3531050000000002	2.38582	0.0138529	0.00157464	0.0953077	0.036631
chr11	86008572	86008670	5014226	0	-	0.387755	(0.378,0.408]	chr11	472976	6	INTRON	INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000630913.2:ENST00000528398.5:ENST00000356360.9:ENST00000534412.5:ENST00000531771.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	27	348	2	2.06793	2.35305	2.63817	7.89415e-4	1.22791e-5	0.0259532	0.0026103
chr1	3737794	3737894	363746	0	-	0.44	(0.408,0.44]	chr1	42584	23	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TP73-AS1	ENSG00000227372.12	ENST00000648526.1:ENST00000418088.6:ENST00000648432.1:ENST00000648479.1:ENST00000452079.5:ENST00000650545.1:ENST00000419973.1:ENST00000647831.1:ENST00000648600.1:ENST00000423764.6:ENST00000647817.1:ENST00000649123.1:ENST00000648270.1:ENST00000650039.1:ENST00000650037.1:ENST00000649468.1:ENST00000648553.1:ENST00000649348.1:ENST00000636630.1	transcribed_unitary_pseudogene	processed_transcript	transcribed_unitary_pseudogene	processed_transcript	6	79	2	2.15507	2.3530499999999996	2.55103	0.00618525	0.00587353	0.0690758	0.0677395
chr3	142185107	142185206	1835743	0	-	0.515152	(0.476,0.515]	chr3	184433	5	UTR3	UTR3:EXON_MRNA:INTRON	GK5	ENSG00000175066.16	ENST00000392993.7:ENST00000492097.5:ENST00000480757.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	57	2	1.63187	2.353045	3.07422	0.037661	0.00506023	0.14058	0.0646039
chrX	66234610	66234710	7673410	0	+	0.39	(0.378,0.408]	chrX	785355	260	INTRON	INTRON	HEPH	ENSG00000089472.18	ENST00000519389.6:ENST00000683049.1:ENST00000458621.6:ENST00000684042.1:ENST00000343002.7:ENST00000336279.9:ENST00000441993.7:ENST00000419594.6:ENST00000682362.1:ENST00000425114.2:ENST00000682927.1:ENST00000683420.1:ENST00000684071.1:ENST00000684625.1:ENST00000684603.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	59	2	1.48005	2.35302	3.22599	0.0596711	0.00288652	0.168954	0.0494641
chr1	764897	764984	357619	0	-	0.494253	(0.476,0.515]	chr1	41185	3	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ENSG00000230021:ENSG00000228327	ENSG00000230021.10:ENSG00000228327.4	ENST00000634337.2:ENST00000635509.2:ENST00000506640.2:ENST00000428504.2	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene:transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	15	186	2	1.96769	2.352945	2.7382	0.00190879	1.16053e-4	0.0403772	0.00972087
chr6	15263454	15263554	2823120	0	+	0.35	(0.32,0.35]	chr6	265190	141	INTRON	INTRON	JARID2	ENSG00000008083.14	ENST00000341776.7:ENST00000397311.4	protein_coding	protein_coding	protein_coding	protein_coding	3	48	2	1.99307	2.35288	2.71269	0.04271	0.0181461	0.148082	0.114853
chr7	152301169	152301268	3679934	0	-	0.434343	(0.408,0.44]	chr7	341623	144	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000684262.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	17	205	2	2.18727	2.35288	2.51849	4.23399e-4	3.46504e-4	0.0189958	0.0165762
chr6	27843254	27843354	2839069	0	+	0.26	[0,0.28]	chr6	266457	12	INTRON	INTRON	H2BC15	ENSG00000233822.6	ENST00000449538.3:ENST00000606613.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	187	2	2.2048	2.352855	2.50091	0.00827032	6.02925e-4	0.0774402	0.0223465
chr3	72429503	72429603	1745750	0	-	0.41	(0.408,0.44]	chr3	177368	490	INTRON	INTRON	RYBP	ENSG00000163602.12	ENST00000477973.5	protein_coding	protein_coding	protein_coding	protein_coding	9	112	2	1.45405	2.35281	3.25157	0.0381812	4.51895e-5	0.141795	0.00546706
chr11	70422065	70422162	4821865	0	+	0.453608	(0.44,0.476]	chr11	449646	6	EXON_MRNA	EXON_MRNA:SS3_PROX:SS5_PROX:INTRON	CTTN	ENSG00000085733.16	ENST00000346329.7:ENST00000301843.13:ENST00000376561.7:ENST00000527962.5:ENST00000498223.3:ENST00000525852.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	12	152	2	2.05633	2.352725	2.64912	0.00384449	1.22139e-4	0.0542786	0.00944529
chr16	16520311	16520411	6311065	0	+	0.45	(0.44,0.476]	chr16	604098	203	INTRON	INTRON	ENSG00000260126	ENSG00000260126.2	ENST00000567465.2	lncRNA	lncRNA	lncRNA	lncRNA	6	79	2	2.20714	2.352685	2.49823	0.00718224	0.00493236	0.0756118	0.061186
chr7	100313821	100313921	3586546	0	-	0.42	(0.408,0.44]	chr7	334330	127	INTRON	INTRON	PMS2P1	ENSG00000078319.11	ENST00000685724.1:ENST00000692351.1:ENST00000685541.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	16	202	2	2.27287	2.35266	2.43245	7.41953e-4	1.83922e-4	0.0250391	0.0118123
chr12	132686653	132686753	5449189	0	-	0.6	(0.57,1]	chr12	521881	50	INTRON	INTRON	POLE	ENSG00000177084.18	ENST00000320574.10:ENST00000672742.1:ENST00000537064.5:ENST00000535270.5:ENST00000539357.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	61	2	2.32017	2.35263	2.38509	0.00488159	3.86224e-4	0.0640618	0.0182867
chr7	50392063	50392163	3317588	0	+	0.58	(0.57,1]	chr7	308293	2	SS5_PROX	SS5_PROX:INTRON	IKZF1	ENSG00000185811.20	ENST00000645066.1:ENST00000331340.8:ENST00000349824.8:ENST00000343574.9:ENST00000357364.8:ENST00000440768.6:ENST00000346667.8:ENST00000615491.4:ENST00000359197.9:ENST00000439701.2:ENST00000438033.5:ENST00000471793.1:ENST00000426121.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	47	2	2.30825	2.3525150000000004	2.39678	0.00499769	0.00143653	0.0617433	0.0347139
chr1	173897971	173898071	257046	0	+	0.42	(0.408,0.44]	chr1	30716	120	UTR3	UTR3:EXON_MRNA	ZBTB37	ENSG00000185278.16	ENST00000367701.10	protein_coding	protein_coding	protein_coding	protein_coding	5	66	2	1.87977	2.35244	2.82511	0.0282738	0.00189528	0.125825	0.0402736
chr16	23572689	23572789	6323216	0	+	0.41	(0.408,0.44]	chr16	605575	22	UTR3	UTR3:EXON_MRNA	UBFD1	ENSG00000103353.16	ENST00000567212.5:ENST00000395878.8	protein_coding	protein_coding	protein_coding	protein_coding	5	56	2	1.7519	2.35243	2.95296	0.0239555	0.00929354	0.129259	0.0817766
chr7	91941447	91941547	3351019	0	+	0.43	(0.408,0.44]	chr7	312179	3	SS5_PROX	SS5_PROX:INTRON	AKAP9	ENSG00000127914.19	ENST00000680534.1:ENST00000680513.1:ENST00000680072.1:ENST00000679821.1:ENST00000679554.1:ENST00000356239.8:ENST00000679521.1:ENST00000680181.1:ENST00000681722.1:ENST00000680766.1:ENST00000679448.1:ENST00000681412.1:ENST00000680047.1:ENST00000679474.1:ENST00000680952.1:ENST00000679457.1:ENST00000679722.1:ENST00000680074.1:ENST00000493453.1:ENST00000394564.5:ENST00000674381.2:ENST00000359028.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	56	2	1.7519	2.35243	2.95296	0.0239555	0.00929354	0.129259	0.0817766
chr11	65996739	65996837	4967905	0	-	0.387755	(0.378,0.408]	chr11	468355	3	UTR3	UTR3:EXON_MRNA	EIF1AD	ENSG00000175376.9	ENST00000312234.6:ENST00000533544.6:ENST00000526451.5	protein_coding	protein_coding	protein_coding	protein_coding	4	59	2	2.11103	2.3524149999999997	2.5938	0.0266911	0.00614976	0.134419	0.0676501
chr19	5709247	5709343	7124600	0	-	0.510417	(0.476,0.515]	chr19	717144	4	INTRON	INTRON	LONP1	ENSG00000196365.12	ENST00000360614.8:ENST00000587552.5:ENST00000540670.6:ENST00000593119.5:ENST00000585374.5:ENST00000590558.5:ENST00000590729.5:ENST00000587365.1:ENST00000586617.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	26	316	2	1.95999	2.35236	2.74473	0.00104713	8.89998e-6	0.0294873	0.00214966
chr9	37289117	37289217	4119349	0	+	0.44	(0.408,0.44]	chr9	375393	44	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000461038.5:ENST00000488607.5:ENST00000463625.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	56	2	2.21238	2.35228	2.49218	0.0193525	0.00855168	0.119831	0.0780217
chr1	96779037	96779136	168523	0	+	0.40404	(0.378,0.408]	chr1	18243	7	INTRON	INTRON	PTBP2	ENSG00000117569.19	ENST00000482253.5:ENST00000675735.1:ENST00000609116.5:ENST00000674951.1:ENST00000675080.1:ENST00000426398.3:ENST00000370197.5:ENST00000370198.5:ENST00000476419.5:ENST00000676292.1:ENST00000676096.1:ENST00000675365.1:ENST00000674579.1:ENST00000675401.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	52	2	1.77782	2.352235	2.92665	0.0388177	0.0086017	0.143072	0.083729
chr10	110293660	110293758	4697161	0	-	0.306122	(0.28,0.32]	chr10	433149	31	UTR3	UTR3:EXON_MRNA	SMNDC1	ENSG00000119953.14	ENST00000369603.10	protein_coding	protein_coding	protein_coding	protein_coding	3	51	2	2.1895	2.35219	2.51488	0.0380957	0.0227063	0.141678	0.124921
chr19	10665000	10665099	7013319	0	+	0.30303	(0.28,0.32]	chr19	696757	91	INTRON	INTRON	ILF3	ENSG00000129351.17	ENST00000449870.5:ENST00000587928.5:ENST00000407004.7:ENST00000589998.5:ENST00000589600.5:ENST00000589283.5:ENST00000590009.5:ENST00000593199.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	51	2	2.1895	2.35219	2.51488	0.0380957	0.0227063	0.141678	0.124921
chr2	113896241	113896341	854305	0	+	0.29	(0.28,0.32]	chr2	95895	51	INTRON	INTRON	ACTR3	ENSG00000115091.12	ENST00000443297.5:ENST00000263238.7:ENST00000415792.5:ENST00000446821.5:ENST00000535589.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	51	2	2.1895	2.35219	2.51488	0.0380957	0.0227063	0.141678	0.124921
chr17	39390474	39390574	6766541	0	-	0.5	(0.476,0.515]	chr17	665497	469	INTRON	INTRON	FBXL20	ENSG00000108306.13	ENST00000264658.11:ENST00000583610.5:ENST00000394294.7:ENST00000577399.5:ENST00000647139.1	protein_coding	protein_coding	protein_coding	protein_coding	8	106	2	1.82595	2.3521199999999998	2.87829	0.0202339	1.3427e-4	0.109955	0.00998557
chr15	95647572	95647672	6108441	0	+	0.51	(0.476,0.515]	chr15	581765	87	INTRON	INTRON	ENSG00000275016	ENSG00000275016.5	ENST00000612595.2:ENST00000661571.1:ENST00000614344.5:ENST00000667344.1:ENST00000666682.1:ENST00000663174.1:ENST00000661536.1:ENST00000615194.1:ENST00000667774.1:ENST00000616588.4:ENST00000656202.1:ENST00000666386.1:ENST00000611285.1	lncRNA	lncRNA	lncRNA	lncRNA	3	41	2	2.05154	2.35211	2.65268	0.0336015	0.0201975	0.134145	0.121243
chr19	10161398	10161494	7134521	0	-	0.510417	(0.476,0.515]	chr19	719179	6	INTRON	INTRON	DNMT1	ENSG00000130816.17	ENST00000340748.8:ENST00000359526.9:ENST00000592705.5:ENST00000679103.1:ENST00000677634.1:ENST00000676820.1:ENST00000677250.1:ENST00000677013.1:ENST00000677685.1:ENST00000677616.1:ENST00000676604.1:ENST00000678024.1:ENST00000676868.1:ENST00000677783.1:ENST00000678694.1:ENST00000676610.1:ENST00000678804.1:ENST00000679313.1:ENST00000677946.1:ENST00000589349.5:ENST00000591764.1:ENST00000585920.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	41	2	2.05154	2.35211	2.65268	0.0336015	0.0201975	0.134145	0.121243
chr2	135605797	135605894	874702	0	+	0.505155	(0.476,0.515]	chr2	97910	9	EXON_MRNA	EXON_MRNA:INTRON	R3HDM1	ENSG00000048991.17	ENST00000463230.5:ENST00000683871.1:ENST00000409478.5:ENST00000264160.8:ENST00000488035.5:ENST00000410054.5:ENST00000628915.2:ENST00000436436.5:ENST00000409606.5:ENST00000456040.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	41	2	2.05154	2.35211	2.65268	0.0336015	0.0201975	0.134145	0.121243
chr7	67306981	67307080	3329129	0	+	0.494949	(0.476,0.515]	chr7	309488	5	INTRON	INTRON	STAG3L4	ENSG00000106610.16	ENST00000416602.6:ENST00000689067.1:ENST00000691248.1:ENST00000689978.1:ENST00000687534.1:ENST00000647855.1:ENST00000472361.5:ENST00000689458.1:ENST00000352103.6	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript:transcribed_unprocessed_pseudogene	3	41	2	2.05154	2.35211	2.65268	0.0336015	0.0201975	0.134145	0.121243
chr7	132988663	132988763	3644952	0	-	0.49	(0.476,0.515]	chr7	338859	130	INTRON	INTRON	CHCHD3	ENSG00000106554.13	ENST00000262570.10:ENST00000448878.6:ENST00000496427.5:ENST00000423635.5:ENST00000481152.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	41	2	2.05154	2.35211	2.65268	0.0336015	0.0201975	0.134145	0.121243
chr17	82774988	82775087	6694434	0	+	0.59596	(0.57,1]	chr17	654853	21	INTRON	INTRON	TBCD	ENSG00000141556.22	ENST00000682479.1:ENST00000682722.1:ENST00000684464.1:ENST00000684544.1:ENST00000681983.1:ENST00000684361.1:ENST00000683184.1:ENST00000683282.1:ENST00000684408.1:ENST00000355528.9:ENST00000683444.1:ENST00000684776.1:ENST00000683041.1:ENST00000684760.1:ENST00000684349.1:ENST00000682213.1:ENST00000683009.1:ENST00000682921.1:ENST00000682107.1:ENST00000539345.6:ENST00000684000.1:ENST00000684188.1:ENST00000684429.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	22	2	2.17026	2.352045	2.53383	0.02547	0.0220522	0.123836	0.12011
chr3	197051159	197051238	1900988	0	-	0.506329	(0.476,0.515]	chr3	190474	1	SS5_PROX	SS5_PROX:INTRON	DLG1	ENSG00000075711.21	ENST00000667157.1:ENST00000346964.6:ENST00000656428.1:ENST00000663148.1:ENST00000655488.1:ENST00000357674.9:ENST00000671185.1:ENST00000658701.1:ENST00000667104.1:ENST00000661336.1:ENST00000669565.1:ENST00000670455.1:ENST00000656087.1:ENST00000670366.1:ENST00000653583.1:ENST00000653795.1:ENST00000671246.1:ENST00000661453.1:ENST00000665728.1:ENST00000664564.1:ENST00000653331.1:ENST00000660432.1:ENST00000660898.1:ENST00000657381.1:ENST00000659221.1:ENST00000654737.1:ENST00000469371.5:ENST00000669332.1:ENST00000659716.1:ENST00000660553.1:ENST00000664991.1:ENST00000419354.5:ENST00000661440.1:ENST00000667971.1:ENST00000670935.1:ENST00000668578.1:ENST00000666007.1:ENST00000661229.1:ENST00000660237.1:ENST00000657098.1:ENST00000661013.1:ENST00000436682.6:ENST00000452595.5:ENST00000662727.1:ENST00000422288.6:ENST00000448528.6:ENST00000443183.5:ENST00000656944.1:ENST00000392382.6:ENST00000450955.5:ENST00000658155.1:ENST00000669714.1:ENST00000654733.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	28	344	2	2.27202	2.3520399999999997	2.43206	9.99931e-5	9.07821e-5	0.00848604	0.00843834
chr14	58267296	58267393	5904430	0	-	0.298969	(0.28,0.32]	chr14	560808	21	EXON_LNCRNA	EXON_LNCRNA	PSMA3-AS1	ENSG00000257621.9	ENST00000554360.5:ENST00000654187.2:ENST00000667365.1:ENST00000556002.5:ENST00000555275.5:ENST00000555162.1:ENST00000554378.5	lncRNA	lncRNA	lncRNA	lncRNA	3	51	2	2.0243	2.3520250000000003	2.67975	0.0364967	0.0252505	0.153759	0.12011
chr1	52849367	52849467	104972	0	+	0.58	(0.57,1]	chr1	13720	60	INTRON	INTRON	ZYG11A	ENSG00000203995.10	ENST00000371532.5:ENST00000612017.4:ENST00000371528.2	protein_coding	protein_coding	protein_coding	protein_coding	4	29	2	2.28103	2.351925	2.42282	0.0151554	0.00879576	0.108535	0.0790073
chr17	20054677	20054777	6572240	0	+	0.58	(0.57,1]	chr17	639055	362	INTRON	INTRON	SPECC1	ENSG00000128487.19	ENST00000677148.1:ENST00000679048.1:ENST00000678019.1:ENST00000678315.1:ENST00000678321.1:ENST00000676570.1:ENST00000678651.1:ENST00000679049.1:ENST00000472876.5:ENST00000467722.3:ENST00000583528.6:ENST00000680019.1:ENST00000395527.9:ENST00000681593.1:ENST00000680830.1:ENST00000680124.1:ENST00000583482.7:ENST00000679255.1:ENST00000681202.1:ENST00000677914.1:ENST00000578321.2:ENST00000680374.1:ENST00000583463.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	29	2	2.28103	2.351925	2.42282	0.0151554	0.00879576	0.108535	0.0790073
chr7	158702348	158702448	3688778	0	-	0.45	(0.44,0.476]	chr7	342286	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	NCAPG2	ENSG00000146918.20	ENST00000356309.8:ENST00000432615.5:ENST00000409423.5:ENST00000409339.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	55	2	1.96602	2.351915	2.73781	0.0426807	0.00276493	0.148082	0.04867
chr7	123724920	123725020	3632420	0	-	0.35	(0.32,0.35]	chr7	337581	153	INTRON	INTRON	WASL	ENSG00000106299.8	ENST00000223023.5	protein_coding	protein_coding	protein_coding	protein_coding	8	121	2	2.12641	2.351905	2.5774	0.00815266	8.38017e-4	0.0766625	0.0263691
chr15	88903061	88903157	6256731	0	-	0.604167	(0.57,1]	chr15	596868	9	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	MFGE8	ENSG00000140545.16	ENST00000268150.13:ENST00000558018.5:ENST00000558029.6:ENST00000695566.1:ENST00000268151.11:ENST00000566497.5:ENST00000695774.1:ENST00000542878.5:ENST00000613965.1:ENST00000617199.2:ENST00000695567.1:ENST00000695568.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	22	2	1.91937	2.35173	2.78409	0.0468438	0.0116033	0.167716	0.0889104
chr16	29920212	29920309	6471964	0	-	0.597938	(0.57,1]	chr16	625365	7	UTR3	UTR3:EXON_MRNA:INTRON	KCTD13	ENSG00000174943.11	ENST00000308768.9:ENST00000568000.6:ENST00000566842.5:ENST00000568995.1:ENST00000563264.1:ENST00000566413.1:ENST00000561540.2:ENST00000648037.1:ENST00000567795.3:ENST00000649581.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	22	2	1.91937	2.35173	2.78409	0.0468438	0.0116033	0.167716	0.0889104
chr16	69628797	69628895	6380639	0	+	0.591837	(0.57,1]	chr16	613173	19	INTRON	INTRON	NFAT5	ENSG00000102908.22	ENST00000426654.6:ENST00000349945.7:ENST00000354436.6:ENST00000627621.3:ENST00000650987.1:ENST00000567990.5:ENST00000567239.5:ENST00000393742.7:ENST00000565301.2:ENST00000566899.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	22	2	1.91937	2.35173	2.78409	0.0468438	0.0116033	0.167716	0.0889104
chr19	3961743	3961840	7118959	0	-	0.587629	(0.57,1]	chr19	716024	7	EXON_MRNA	EXON_MRNA:INTRON	DAPK3	ENSG00000167657.14	ENST00000545797.7:ENST00000301264.7:ENST00000595279.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	22	2	1.91937	2.35173	2.78409	0.0468438	0.0116033	0.167716	0.0889104
chr4	10098491	10098591	2107240	0	-	0.64	(0.57,1]	chr4	208474	1	SS5_PROX	SS5_PROX:INTRON	WDR1	ENSG00000071127.17	ENST00000499869.7:ENST00000382451.6:ENST00000382452.6:ENST00000502702.5:ENST00000508079.1:ENST00000264785.11:ENST00000505851.5:ENST00000514319.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	22	2	1.91937	2.35173	2.78409	0.0468438	0.0116033	0.167716	0.0889104
chr6	111005848	111005947	2939543	0	+	0.59596	(0.57,1]	chr6	276871	57	INTRON	INTRON	RPF2	ENSG00000197498.13	ENST00000368864.8:ENST00000441448.7:ENST00000607388.1:ENST00000425871.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	22	2	1.91937	2.35173	2.78409	0.0468438	0.0116033	0.167716	0.0889104
chr7	39951952	39952049	3310638	0	+	0.57732000000000006	(0.57,1]	chr7	307477	2	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	CDK13	ENSG00000065883.17	ENST00000340829.10:ENST00000181839.10:ENST00000613626.4:ENST00000643868.1:ENST00000646039.1:ENST00000643859.1	protein_coding	protein_coding	protein_coding	protein_coding	3	22	2	1.91937	2.35173	2.78409	0.0468438	0.0116033	0.167716	0.0889104
chr14	103406563	103406663	5825833	0	+	0.4	(0.378,0.408]	chr14	552794	9	INTRON	INTRON	MARK3	ENSG00000075413.19	ENST00000678179.1:ENST00000676838.1:ENST00000677348.1:ENST00000677404.1:ENST00000676694.1:ENST00000676938.1:ENST00000678619.1:ENST00000676897.1:ENST00000677214.1:ENST00000677942.1:ENST00000676830.1:ENST00000678999.1:ENST00000677228.1:ENST00000556744.2:ENST00000677104.1:ENST00000679330.1:ENST00000560417.6:ENST00000440884.7:ENST00000676475.1:ENST00000677035.1:ENST00000678022.1:ENST00000677560.1:ENST00000561314.6:ENST00000429436.7:ENST00000677118.1:ENST00000676564.1:ENST00000678169.1:ENST00000678175.1:ENST00000678897.1:ENST00000678278.1:ENST00000676645.1:ENST00000677829.1:ENST00000678302.1:ENST00000677133.1:ENST00000561164.2:ENST00000558223.6:ENST00000559328.6:ENST00000678207.1:ENST00000677360.1:ENST00000676905.1:ENST00000678343.1:ENST00000677347.1:ENST00000678071.1:ENST00000677432.1:ENST00000678237.1:ENST00000677604.1:ENST00000676518.1:ENST00000677051.1:ENST00000677857.1:ENST00000677869.1:ENST00000678423.1:ENST00000560603.6:ENST00000416682.6:ENST00000303622.13:ENST00000216288.11:ENST00000679105.1:ENST00000553942.5:ENST00000335102.9:ENST00000561225.1:ENST00000678091.1:ENST00000561071.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	71	2	2.00398	2.351715	2.69945	0.0393906	9.70462e-4	0.143072	0.0286926
chr1	32048983	32049083	63005	0	+	0.3	(0.28,0.32]	chr1	7991	32	INTRON	INTRON	KHDRBS1	ENSG00000121774.18	ENST00000484270.2	protein_coding	processed_transcript	protein_coding	processed_transcript	10	162	2	2.05338	2.3515750000000004	2.64977	0.00567009	6.70052e-4	0.0653997	0.0234992
chr3	138674582	138674681	1829873	0	-	0.353535	(0.35,0.378]	chr3	183941	90	INTRON	INTRON	PIK3CB	ENSG00000051382.9	ENST00000674063.1:ENST00000289153.6:ENST00000477593.5:ENST00000469284.6:ENST00000544716.5:ENST00000462898.5:ENST00000481749.5:ENST00000493568.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	82	2	2.21686	2.3515449999999998	2.48623	0.00938784	0.00414535	0.0817766	0.0589266
chr7	884589	884687	3269190	0	+	0.581633	(0.57,1]	chr7	303678	3	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	SUN1:GET4	ENSG00000164828.18:ENSG00000239857.7	ENST00000457861.1:ENST00000265857.8:ENST00000412734.6:ENST00000407192.5:ENST00000441491.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	49	2	2.01216	2.3515449999999998	2.69093	0.0163389	2.65452e-4	0.101571	0.0144243
chr6	167853873	167853973	3034607	0	+	0.34	(0.32,0.35]	chr6	282711	256	INTRON	INTRON	AFDN	ENSG00000130396.21	ENST00000683244.1:ENST00000400825.8:ENST00000351017.9:ENST00000344191.8:ENST00000392112.5:ENST00000392108.7:ENST00000400824.8:ENST00000400822.7:ENST00000447894.6:ENST00000366809.6:ENST00000366806.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	64	2	2.3471	2.3515050000000004	2.35591	0.0156413	0.0128129	0.101393	0.0990564
chr16	89420424	89420524	6542898	0	-	0.46	(0.44,0.476]	chr16	634269	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	ANKRD11:ENSG00000261692	ENSG00000167522.17:ENSG00000261692.1	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1:ENST00000567166.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA:processed_transcript	4	55	2	2.27304	2.3514999999999997	2.42996	0.0158915	0.0104804	0.109464	0.0855777
chr17	75141994	75142093	6835954	0	-	0.535354	(0.515,0.57]	chr17	675456	54	INTRON	INTRON	JPT1	ENSG00000189159.16	ENST00000409753.8:ENST00000476258.5:ENST00000482348.5:ENST00000304834.11:ENST00000356033.8:ENST00000470924.5:ENST00000481094.1:ENST00000481647.5:ENST00000580380.1:ENST00000581874.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	56	2	1.97035	2.351465	2.73258	0.0195832	0.00260192	0.109483	0.0470772
chr1	212994941	212995040	634878	0	-	0.282828	(0.28,0.32]	chr1	74989	29	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ANGEL2	ENSG00000174606.14	ENST00000366962.8:ENST00000360506.6:ENST00000535388.2:ENST00000473303.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	108	2	2.19819	2.3514049999999997	2.50462	0.0102735	0.00307394	0.0850389	0.0510029
chr10	130168738	130168835	4536659	0	+	0.525773	(0.515,0.57]	chr10	418810	14	INTRON	INTRON	GLRX3	ENSG00000108010.12	ENST00000331244.10:ENST00000481034.1:ENST00000368644.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	37	2	2.12971	2.3513450000000002	2.57298	0.0757903	0.00506495	0.194427	0.0646039
chr2	202889822	202889921	1315239	0	-	0.525253	(0.515,0.57]	chr2	137954	49	INTRON	INTRON	WDR12	ENSG00000138442.11	ENST00000688520.1:ENST00000261015.5:ENST00000477727.5:ENST00000475611.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	35	2	1.8707	2.35129	2.83188	0.0523213	0.0108207	0.160182	0.0920575
chr20	36767568	36767668	7337817	0	-	0.52	(0.515,0.57]	chr20	747675	2	SS5_PROX	SS5_PROX:INTRON	DSN1	ENSG00000149636.16	ENST00000426836.5:ENST00000373734.8:ENST00000480153.5:ENST00000473615.5:ENST00000373750.9:ENST00000448110.6:ENST00000373740.7:ENST00000447406.1:ENST00000438549.5:ENST00000492703.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	35	2	1.8707	2.35129	2.83188	0.0523213	0.0108207	0.160182	0.0920575
chr2	65402209	65402309	1143893	0	-	0.4	(0.378,0.408]	chr2	122242	246	INTRON	INTRON	SPRED2	ENSG00000198369.10	ENST00000356388.9:ENST00000440972.1	protein_coding	protein_coding	protein_coding	protein_coding	5	68	2	2.18512	2.351225	2.51733	0.00902136	0.00808319	0.0851259	0.0766625
chr1	167224749	167224848	244887	0	+	0.343434	(0.32,0.35]	chr1	29245	34	INTRON	INTRON	POU2F1	ENSG00000143190.23	ENST00000559038.5:ENST00000367866.7:ENST00000557909.5:ENST00000271411.8:ENST00000429375.6:ENST00000560232.6:ENST00000442313.5:ENST00000367865.5:ENST00000492850.5:ENST00000541643.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	106	2	2.07731	2.35122	2.62513	0.00975384	0.00156724	0.0833791	0.0365592
chr19	10330059	10330159	7135475	0	-	0.53	(0.515,0.57]	chr19	719367	2	SS5_PROX	SS5_PROX:INTRON	RAVER1	ENSG00000161847.14	ENST00000617231.5:ENST00000592208.5:ENST00000611074.4:ENST00000615032.4:ENST00000591969.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	65	2	2.02107	2.3511949999999997	2.68132	0.00910188	0.00324198	0.0809976	0.0524329
chr19	6413359	6413445	7128595	0	-	0.255814	[0,0.28]	chr19	717686	4	UTR3	UTR3:EXON_MRNA	KHSRP	ENSG00000088247.19	ENST00000600480.2:ENST00000398148.7:ENST00000594745.5	protein_coding	protein_coding	protein_coding	protein_coding	3	58	2	2.10688	2.35118	2.59548	0.0346067	0.0307985	0.143385	0.136649
chr16	89647978	89648078	6543682	0	-	0.75	(0.57,1]	chr16	634307	4	CDS	CDS:UTR3:EXON_MRNA:INTRON	CHMP1A	ENSG00000131165.16	ENST00000675909.1:ENST00000397901.8:ENST00000676355.1:ENST00000675161.1:ENST00000676402.1:ENST00000675016.1:ENST00000551981.6:ENST00000675309.1:ENST00000675952.1:ENST00000676342.1:ENST00000535997.7:ENST00000674799.1:ENST00000675536.1:ENST00000549328.2:ENST00000675778.1:ENST00000676118.1:ENST00000675076.1:ENST00000549139.5:ENST00000550102.5:ENST00000548650.1:ENST00000547614.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	47	2	1.94024	2.35117	2.7621000000000002	0.0116325	5.29607e-4	0.0889284	0.0207276
chr5	139670174	139670273	2501419	0	+	0.646465	(0.57,1]	chr5	239084	40	INTRON	INTRON	CXXC5	ENSG00000171604.12	ENST00000502295.1:ENST00000504944.1:ENST00000302517.8:ENST00000507139.5:ENST00000504844.1:ENST00000502336.5:ENST00000520967.1:ENST00000511048.1:ENST00000512816.1:ENST00000509238.1	protein_coding	protein_coding	protein_coding	protein_coding	7	47	2	1.94024	2.35117	2.7621000000000002	0.0116325	5.29607e-4	0.0889284	0.0207276
chr10	63243365	63243465	4633161	0	-	0.5	(0.476,0.515]	chr10	426215	230	INTRON	INTRON	JMJD1C	ENSG00000171988.20	ENST00000399262.7:ENST00000402544.5:ENST00000542921.5:ENST00000469152.5:ENST00000489372.4:ENST00000633035.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	54	2	2.21677	2.35114	2.48551	0.0207026	0.00756632	0.110999	0.0773151
chr7	72909970	72910070	3330098	0	+	0.49	(0.476,0.515]	chr7	309565	185	INTRON	INTRON	POM121	ENSG00000196313.13	ENST00000627934.3:ENST00000395270.5	protein_coding	protein_coding	protein_coding	protein_coding	4	54	2	2.21677	2.35114	2.48551	0.0207026	0.00756632	0.110999	0.0773151
chr8	30801148	30801247	3933034	0	-	0.484848	(0.476,0.515]	chr8	360326	10	INTRON	INTRON	PPP2CB	ENSG00000104695.13	ENST00000221138.9:ENST00000518564.1:ENST00000518243.5:ENST00000520056.1:ENST00000520500.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	54	2	2.21677	2.35114	2.48551	0.0207026	0.00756632	0.110999	0.0773151
chr7	152406443	152406543	3680998	0	-	0.27	[0,0.28]	chr7	341660	474	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000682301.1:ENST00000452749.2:ENST00000680867.1:ENST00000683800.1:ENST00000684278.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	135	2	2.05348	2.3511249999999997	2.64877	0.00757778	0.00463217	0.0749063	0.0627861
chr4	189948665	189948765	2092256	0	+	0.45	(0.44,0.476]	chr4	206702	50	INTRON	INTRON	FRG1	ENSG00000109536.12	ENST00000524583.5:ENST00000226798.9:ENST00000533157.5:ENST00000531991.6:ENST00000514482.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	49	2	1.55662	2.351105	3.14559	0.0688347	0.00384923	0.184298	0.0562562
chr5	146220002	146220102	2514279	0	+	0.46	(0.44,0.476]	chr5	240158	5	INTRON	INTRON	ENSG00000275740:RBM27	ENSG00000275740.1:ENSG00000091009.8	ENST00000506502.2:ENST00000265271.7	protein_coding	protein_coding	protein_coding	protein_coding	4	49	2	1.55662	2.351105	3.14559	0.0688347	0.00384923	0.184298	0.0562562
chrX	55022465	55022564	7823218	0	-	0.313131	(0.28,0.32]	chrX	798451	8	INTRON	INTRON	ALAS2	ENSG00000158578.21	ENST00000396198.7:ENST00000650242.1:ENST00000335854.8:ENST00000463868.5:ENST00000493869.2:ENST00000477869.6:ENST00000455688.2:ENST00000644983.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	147	2	2.25851	2.3510299999999997	2.44355	0.00557435	9.82119e-4	0.0649303	0.0288015
chr5	54047206	54047306	2618276	0	-	0.38	(0.378,0.408]	chr5	248835	1352	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	42	2	2.23831	2.35102	2.46373	0.0382831	0.0179575	0.141795	0.114265
chr6	15263554	15263654	2823121	0	+	0.4	(0.378,0.408]	chr6	265190	142	INTRON	INTRON	JARID2	ENSG00000008083.14	ENST00000341776.7:ENST00000397311.4	protein_coding	protein_coding	protein_coding	protein_coding	3	42	2	2.23831	2.35102	2.46373	0.0382831	0.0179575	0.141795	0.114265
chr8	38243277	38243375	3735646	0	+	0.408163	(0.378,0.408]	chr8	347117	5	INTRON	INTRON	DDHD2	ENSG00000085788.14	ENST00000397166.7:ENST00000520272.6:ENST00000527415.5:ENST00000532106.1:ENST00000528888.5:ENST00000531344.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	42	2	2.23831	2.35102	2.46373	0.0382831	0.0179575	0.141795	0.114265
chr10	31807165	31807263	4589082	0	-	0.377551	(0.35,0.378]	chr10	423065	19	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ARHGAP12	ENSG00000165322.18	ENST00000344936.7:ENST00000375245.8:ENST00000396144.8:ENST00000375250.9:ENST00000311380.8:ENST00000492028.5:ENST00000497085.1:ENST00000493008.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	33	2	2.30249	2.35094	2.39939	0.0519726	0.0458078	0.176696	0.149888
chr12	10964980	10965073	5267429	0	-	0.354839	(0.35,0.378]	chr12	502204	7	EXON_PSEUDO	EXON_PSEUDO:INTRON	ENSG00000275778:PRH1:TAS2R15P	ENSG00000275778.2:ENSG00000231887.8:ENSG00000212125.2	ENST00000536668.2:ENST00000535024.6:ENST00000539853.5:ENST00000541977.5:ENST00000536086.2:ENST00000546317.1:ENST00000390674.2	protein_coding	protein_coding	protein_coding:unprocessed_pseudogene	protein_coding:nonsense_mediated_decay:processed_transcript:unprocessed_pseudogene	2	33	2	2.30249	2.35094	2.39939	0.0519726	0.0458078	0.176696	0.149888
chr13	41001629	41001729	5577354	0	-	0.37	(0.35,0.378]	chr13	533202	84	INTRON	INTRON	ELF1	ENSG00000120690.16	ENST00000239882.7:ENST00000405737.2	protein_coding	protein_coding	protein_coding	protein_coding	2	33	2	2.30249	2.35094	2.39939	0.0519726	0.0458078	0.176696	0.149888
chr2	131568205	131568303	867467	0	+	0.367347	(0.35,0.378]	chr2	97472	35	EXON_LNCRNA	EXON_LNCRNA	ENSG00000286208	ENSG00000286208.1	ENST00000652012.1	lncRNA	lncRNA	lncRNA	lncRNA	2	33	2	2.30249	2.35094	2.39939	0.0519726	0.0458078	0.176696	0.149888
chr20	56371450	56371547	7358671	0	-	0.350515	(0.35,0.378]	chr20	750340	4	INTRON	INTRON	AURKA	ENSG00000087586.18	ENST00000395914.5:ENST00000395913.7:ENST00000312783.10:ENST00000395911.5:ENST00000395915.8:ENST00000347343.6:ENST00000371356.6:ENST00000395907.5	protein_coding	protein_coding	protein_coding	protein_coding	2	33	2	2.30249	2.35094	2.39939	0.0519726	0.0458078	0.176696	0.149888
chr20	63210775	63210875	7362727	0	-	0.46	(0.44,0.476]	chr20	751230	66	INTRON	INTRON	YTHDF1	ENSG00000149658.18	ENST00000370339.8:ENST00000370334.4	protein_coding	protein_coding	protein_coding	protein_coding	7	83	2	1.99228	2.35094	2.7096	0.00615695	0.00376205	0.0711648	0.0539118
chr4	68343448	68343548	2154822	0	-	0.36	(0.35,0.378]	chr4	212284	47	INTRON	INTRON	YTHDC1	ENSG00000083896.13	ENST00000344157.9:ENST00000355665.7:ENST00000579690.5:ENST00000510746.1	protein_coding	protein_coding	protein_coding	protein_coding	2	33	2	2.30249	2.35094	2.39939	0.0519726	0.0458078	0.176696	0.149888
chr1	149835622	149835721	220090	0	+	0.313131	(0.28,0.32]	chr1	24777	11	INTRON	INTRON	H4C14	ENSG00000270882.3	ENST00000613412.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	3	57	2	2.29724	2.35091	2.40458	0.0554156	0.0141047	0.18407	0.0959618
chr5	179735626	179735726	2561071	0	+	0.51	(0.476,0.515]	chr5	244965	18	INTRON	INTRON	MAML1	ENSG00000161021.13	ENST00000292599.4	protein_coding	protein_coding	protein_coding	protein_coding	3	43	2	2.31726	2.35084	2.38442	0.0417472	0.015077	0.161736	0.0994339
chr7	156821541	156821641	3687294	0	-	0.43	(0.408,0.44]	chr7	342064	247	INTRON	INTRON	LMBR1	ENSG00000105983.23	ENST00000353442.10:ENST00000415428.5:ENST00000454132.5:ENST00000434503.5:ENST00000430278.5:ENST00000434278.5:ENST00000444719.5:ENST00000461469.5:ENST00000414218.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	49	2	1.69566	2.350805	3.00595	0.0453922	0.00781452	0.164236	0.0759016
chr12	76507781	76507881	5371860	0	-	0.38	(0.378,0.408]	chr12	512491	198	INTRON	INTRON	OSBPL8	ENSG00000091039.17	ENST00000261183.8:ENST00000393249.6:ENST00000611266.4:ENST00000393250.8:ENST00000547540.5:ENST00000553139.5:ENST00000549570.5:ENST00000550628.5:ENST00000549646.5:ENST00000551927.5:ENST00000547544.5:ENST00000552178.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	42	2	1.97143	2.35068	2.72993	0.0398704	0.0188736	0.161534	0.108861
chr17	31126557	31126657	6591449	0	+	0.52	(0.515,0.57]	chr17	641053	308	INTRON	INTRON	NF1	ENSG00000196712.20	ENST00000696138.1:ENST00000356175.7:ENST00000487476.5:ENST00000691014.1:ENST00000358273.9:ENST00000431387.8:ENST00000579081.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	56	2	1.91916	2.35062	2.78208	0.0231902	0.00209264	0.118148	0.0424943
chr6	13650772	13650871	3058611	0	-	0.545455	(0.515,0.57]	chr6	284524	57	INTRON	INTRON	RANBP9	ENSG00000010017.13	ENST00000011619.6	protein_coding	protein_coding	protein_coding	protein_coding	5	56	2	1.91916	2.35062	2.78208	0.0231902	0.00209264	0.118148	0.0424943
chr17	30127258	30127358	6587493	0	+	0.31	(0.28,0.32]	chr17	640557	87	INTRON	INTRON	NSRP1	ENSG00000126653.18	ENST00000540900.7:ENST00000584423.5:ENST00000612959.4:ENST00000247026.10:ENST00000577289.6:ENST00000584154.5:ENST00000394826.8:ENST00000479218.6:ENST00000475652.5:ENST00000584317.5:ENST00000583301.5:ENST00000585881.5:ENST00000467446.6:ENST00000580103.6:ENST00000581048.5:ENST00000588614.1:ENST00000589608.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	141	2	1.55075	2.350575	3.1504	0.0330294	1.32696e-4	0.133816	0.00992715
chr9	77889163	77889263	4270521	0	-	0.43	(0.408,0.44]	chr9	392874	730	INTRON	INTRON	GNAQ	ENSG00000156052.11	ENST00000286548.9:ENST00000411677.1	protein_coding	protein_coding	protein_coding	protein_coding	4	50	2	1.74108	2.350575	2.96007	0.0424099	0.00753901	0.148082	0.0773151
chr9	37423133	37423233	4120058	0	+	0.37	(0.35,0.378]	chr9	375451	3	SS5_PROX	SS5_PROX:INTRON	GRHPR	ENSG00000137106.18	ENST00000493368.5:ENST00000318158.11:ENST00000460882.5:ENST00000377824.8:ENST00000487399.5:ENST00000491488.5:ENST00000607784.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	9	124	2	1.66633	2.35057	3.03481	0.0168241	3.07347e-4	0.11068	0.0161362
chr8	102380206	102380306	4012431	0	-	0.44	(0.408,0.44]	chr8	367237	182	INTRON	INTRON	UBR5	ENSG00000104517.13	ENST00000520539.6:ENST00000220959.8:ENST00000521922.5	protein_coding	protein_coding	protein_coding	protein_coding	6	63	2	1.74813	2.350545	2.95296	0.0163902	0.00929354	0.109715	0.0817766
chr11	83076438	83076533	4840471	0	+	0.421053	(0.408,0.44]	chr11	451464	11	INTRON	INTRON	RAB30-DT	ENSG00000246067.9	ENST00000658004.1:ENST00000527627.5:ENST00000526795.1:ENST00000533528.1:ENST00000658917.1	lncRNA	lncRNA	lncRNA	lncRNA	3	41	2	1.88062	2.35052	2.82042	0.0534548	0.0120121	0.162935	0.0962115
chr20	41580437	41580537	7344165	0	-	0.44	(0.408,0.44]	chr20	748566	159	INTRON	INTRON	CHD6	ENSG00000124177.16	ENST00000373233.8:ENST00000373222.3:ENST00000482596.1:ENST00000440647.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	41	2	1.88062	2.35052	2.82042	0.0534548	0.0120121	0.162935	0.0962115
chr9	15498493	15498592	4235958	0	-	0.434343	(0.408,0.44]	chr9	389324	59	INTRON	INTRON	PSIP1	ENSG00000164985.15	ENST00000380738.8:ENST00000380733.9:ENST00000380716.8:ENST00000380715.5:ENST00000397519.6:ENST00000487363.5:ENST00000463712.6:ENST00000488797.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	41	2	1.88062	2.35052	2.82042	0.0534548	0.0120121	0.162935	0.0962115
chr10	6107799	6107895	4385883	0	+	0.25	[0,0.28]	chr10	404786	12	INTRON	INTRON	RBM17	ENSG00000134453.16	ENST00000379888.9:ENST00000437845.6:ENST00000432931.5:ENST00000446108.5:ENST00000418631.5:ENST00000447032.1	protein_coding	protein_coding	protein_coding	protein_coding	3	58	2	2.15457	2.3504050000000003	2.54624	0.0388449	0.0269306	0.143072	0.135288
chr1	27468601	27468701	406549	0	-	0.46	(0.44,0.476]	chr1	48986	393	INTRON	INTRON	WASF2	ENSG00000158195.11	ENST00000618852.5:ENST00000536657.1	protein_coding	protein_coding	protein_coding	protein_coding	17	213	2	2.25169	2.35034	2.4489899999999998	3.9206e-4	2.77384e-4	0.017838	0.015279300000000001
chr5	57242968	57243068	2358754	0	+	0.5	(0.476,0.515]	chr5	227598	54	INTRON	INTRON	GPBP1	ENSG00000062194.16	ENST00000424459.7:ENST00000514387.6:ENST00000506184.7:ENST00000511209.5:ENST00000264779.6:ENST00000513524.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	49	2	2.06898	2.3503299999999996	2.63168	0.0237106	0.0137491	0.118716	0.10247
chr1	51450835	51450935	453662	0	-	0.23	[0,0.28]	chr1	54395	23	INTRON	INTRON	EPS15	ENSG00000085832.17	ENST00000371733.8:ENST00000371730.6	protein_coding	protein_coding	protein_coding	protein_coding	3	58	2	2.05756	2.3503249999999998	2.64309	0.0352544	0.0308646	0.150301	0.13151
chr12	54335820	54335920	5143804	0	+	0.47	(0.44,0.476]	chr12	485588	98	INTRON	INTRON	COPZ1	ENSG00000111481.10	ENST00000552848.5:ENST00000548076.5:ENST00000553009.5:ENST00000549043.5:ENST00000262061.7:ENST00000552218.5:ENST00000551962.5:ENST00000550171.5:ENST00000455864.6:ENST00000552362.5:ENST00000553231.5:ENST00000550027.5:ENST00000551412.5:ENST00000549116.5:ENST00000551779.5:ENST00000548281.5:ENST00000548753.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	30	2	2.20949	2.350305	2.49112	0.0672585	0.0315968	0.183051	0.144381
chr15	83044410	83044509	6249210	0	-	0.454545	(0.44,0.476]	chr15	596405	21	INTRON	INTRON	BTBD1	ENSG00000064726.10	ENST00000261721.9:ENST00000379403.2:ENST00000559652.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	30	2	2.20949	2.350305	2.49112	0.0672585	0.0315968	0.183051	0.144381
chr16	89425994	89426093	6542955	0	-	0.464646	(0.44,0.476]	chr16	634275	39	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	30	2	2.20949	2.350305	2.49112	0.0672585	0.0315968	0.183051	0.144381
chr2	39364810	39364910	1103574	0	-	0.45	(0.44,0.476]	chr2	118501	81	INTRON	INTRON	MAP4K3	ENSG00000011566.15	ENST00000263881.8:ENST00000437545.5:ENST00000341681.9:ENST00000429397.5:ENST00000437968.1:ENST00000484274.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	30	2	2.20949	2.350305	2.49112	0.0672585	0.0315968	0.183051	0.144381
chr2	55536442	55536532	782462	0	+	0.444444	(0.44,0.476]	chr2	88100	3	INTRON	INTRON	CFAP36	ENSG00000163001.12	ENST00000339012.7:ENST00000406691.7:ENST00000407816.7:ENST00000349456.9:ENST00000490934.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	30	2	2.20949	2.350305	2.49112	0.0672585	0.0315968	0.183051	0.144381
chr6	34386763	34386863	3084715	0	-	0.46	(0.44,0.476]	chr6	288633	444	INTRON	INTRON	NUDT3:RPS10-NUDT3	ENSG00000272325.2:ENSG00000270800.3	ENST00000607016.2:ENST00000639725.1:ENST00000639877.1:ENST00000605528.2	protein_coding	protein_coding	protein_coding	protein_coding	2	30	2	2.20949	2.350305	2.49112	0.0672585	0.0315968	0.183051	0.144381
chr6	129685956	129686056	3218567	0	-	0.47	(0.44,0.476]	chr6	299131	436	INTRON	INTRON	ARHGAP18	ENSG00000146376.11	ENST00000368149.3	protein_coding	protein_coding	protein_coding	protein_coding	2	30	2	2.20949	2.350305	2.49112	0.0672585	0.0315968	0.183051	0.144381
chr6	157166107	157166200	3011073	0	+	0.44086	(0.44,0.476]	chr6	281197	2	EXON_MRNA	EXON_MRNA:INTRON	ARID1B	ENSG00000049618.24	ENST00000346085.10:ENST00000636930.2:ENST00000647938.1:ENST00000350026.10:ENST00000414678.7:ENST00000319584.11:ENST00000635849.1:ENST00000637904.1:ENST00000637810.1:ENST00000637015.1:ENST00000636426.1:ENST00000637568.1:ENST00000635957.1:ENST00000400790.3:ENST00000637722.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	30	2	2.20949	2.350305	2.49112	0.0672585	0.0315968	0.183051	0.144381
chr1	110375084	110375184	182703	0	+	0.42	(0.408,0.44]	chr1	20259	22	INTRON	INTRON	LAMTOR5-AS1	ENSG00000224699.10	ENST00000626572.2	lncRNA	lncRNA	lncRNA	lncRNA	7	85	2	1.79454	2.35027	2.906	0.0157394	0.00131817	0.101453	0.0333932
chr9	4803600	4803699	4094972	0	+	0.40404	(0.378,0.408]	chr9	373155	100	INTRON	INTRON	RCL1	ENSG00000120158.12	ENST00000381750.9:ENST00000381732.3:ENST00000442869.5:ENST00000473230.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	53	2	2.31181	2.35027	2.38873	0.0458857	0.00548372	0.149888	0.0671431
chr10	119591377	119591475	4705977	0	-	0.367347	(0.35,0.378]	chr10	434236	28	INTRON	INTRON	TIAL1	ENSG00000151923.18	ENST00000369093.6:ENST00000436547.7:ENST00000489822.5:ENST00000497671.5:ENST00000470781.5:ENST00000462373.1:ENST00000479729.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	44	2	1.9755	2.350235	2.72497	0.0398617	0.0198266	0.161534	0.109608
chr2	61366632	61366732	1129502	0	-	0.37	(0.35,0.378]	chr2	121448	156	INTRON	INTRON	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000453133.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	44	2	1.9755	2.350235	2.72497	0.0398617	0.0198266	0.161534	0.109608
chr8	94546031	94546130	3994067	0	-	0.363636	(0.35,0.378]	chr8	365679	17	INTRON	INTRON	VIRMA	ENSG00000164944.12	ENST00000297591.10:ENST00000421249.2	protein_coding	protein_coding	protein_coding	protein_coding	3	44	2	1.9755	2.350235	2.72497	0.0398617	0.0198266	0.161534	0.109608
chr9	131508810	131508910	4218141	0	+	0.36	(0.35,0.378]	chr9	386913	14	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	POMT1	ENSG00000130714.19	ENST00000372228.9:ENST00000341012.13:ENST00000677216.1:ENST00000676640.1:ENST00000402686.8:ENST00000441334.5:ENST00000677029.1:ENST00000677729.1:ENST00000684579.1:ENST00000678833.1:ENST00000677853.1:ENST00000683392.1:ENST00000678548.1:ENST00000679023.1:ENST00000679111.1:ENST00000676803.1:ENST00000678942.2:ENST00000676915.1:ENST00000677586.1:ENST00000677293.1:ENST00000677626.1:ENST00000678303.1:ENST00000678707.1:ENST00000372220.5:ENST00000676835.1:ENST00000678546.1:ENST00000683229.1:ENST00000683712.1:ENST00000415075.6:ENST00000430619.2:ENST00000448212.5:ENST00000404875.7:ENST00000677028.1:ENST00000678366.1:ENST00000677295.2:ENST00000677099.1:ENST00000678785.1:ENST00000682070.1:ENST00000678739.1:ENST00000678626.1:ENST00000679189.1:ENST00000677677.1:ENST00000677167.1:ENST00000678264.2:ENST00000682813.1:ENST00000423007.6:ENST00000683900.1:ENST00000679076.1:ENST00000684062.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	44	2	1.9755	2.350235	2.72497	0.0398617	0.0198266	0.161534	0.109608
chr5	176528255	176528351	2775639	0	-	0.614583	(0.57,1]	chr5	261434	17	UTR3	UTR3:EXON_MRNA	RNF44	ENSG00000146083.12	ENST00000274811.9	protein_coding	protein_coding	protein_coding	protein_coding	6	41	2	2.30825	2.35023	2.39221	0.00499769	0.00352602	0.0617433	0.0546236
chr10	21552021	21552121	4404588	0	+	0.5	(0.476,0.515]	chr10	406432	1	SS5_PROX	SS5_PROX:INTRON	MLLT10	ENSG00000078403.17	ENST00000651097.1:ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000377100.8:ENST00000377091.7:ENST00000650772.1:ENST00000651298.1:ENST00000652497.1:ENST00000495130.5:ENST00000377059.7:ENST00000621220.4:ENST00000476557.5:ENST00000462999.5:ENST00000430455.2:ENST00000479634.1:ENST00000480415.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	54	2	2.26789	2.350155	2.43242	0.0176567	0.0091895	0.105233	0.0855292
chr10	125109200	125109299	4713823	0	-	0.535354	(0.515,0.57]	chr10	434907	81	INTRON	INTRON	CTBP2	ENSG00000175029.17	ENST00000337195.9:ENST00000411419.6:ENST00000494626.6:ENST00000531469.5:ENST00000460976.5:ENST00000476817.1:ENST00000530884.1:ENST00000530930.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	26	2	2.23915	2.350095	2.46104	0.0596178	0.032841	0.16883600000000001	0.145164
chr16	1359279	1359375	6274238	0	+	0.520833	(0.515,0.57]	chr16	599252	10	INTRON	INTRON	GNPTG	ENSG00000090581.11	ENST00000204679.9:ENST00000526820.5:ENST00000683366.1:ENST00000527168.6:ENST00000683887.1:ENST00000529110.2:ENST00000684126.1:ENST00000529957.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	26	2	2.23915	2.350095	2.46104	0.0596178	0.032841	0.16883600000000001	0.145164
chr17	66445907	66446007	6663731	0	+	0.53	(0.515,0.57]	chr17	650326	817	INTRON	INTRON	PRKCA	ENSG00000154229.12	ENST00000413366.8:ENST00000578063.5:ENST00000284384.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	26	2	2.23915	2.350095	2.46104	0.0596178	0.032841	0.16883600000000001	0.145164
chr17	78155380	78155480	6681772	0	+	0.44	(0.408,0.44]	chr17	652640	81	INTRON	INTRON	C17orf99	ENSG00000187997.12	ENST00000340363.10:ENST00000586999.2:ENST00000591995.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	51	2	1.87977	2.350095	2.82042	0.0282738	0.0120121	0.125825	0.0962115
chr19	36470913	36471013	7174128	0	-	0.52	(0.515,0.57]	chr19	725000	140	INTRON	INTRON	ZNF566	ENSG00000186017.16	ENST00000493391.6:ENST00000392170.7:ENST00000452939.7:ENST00000427002.2:ENST00000424129.7:ENST00000434377.6:ENST00000472909.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	26	2	2.23915	2.350095	2.46104	0.0596178	0.032841	0.16883600000000001	0.145164
chr2	121496596	121496696	1220850	0	-	0.52	(0.515,0.57]	chr2	129999	64	INTRON	INTRON	CLASP1	ENSG00000074054.20	ENST00000263710.8:ENST00000397587.7:ENST00000541377.5:ENST00000409078.8:ENST00000455322.6:ENST00000452274.6:ENST00000418989.5:ENST00000449975.1:ENST00000474065.5:ENST00000480007.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	26	2	2.23915	2.350095	2.46104	0.0596178	0.032841	0.16883600000000001	0.145164
chr2	189563183	189563283	1296396	0	-	0.54	(0.515,0.57]	chr2	135691	2	SS5_PROX	SS5_PROX:INTRON	SLC40A1	ENSG00000138449.11	ENST00000261024.7	protein_coding	protein_coding	protein_coding	protein_coding	2	26	2	2.23915	2.350095	2.46104	0.0596178	0.032841	0.16883600000000001	0.145164
chr2	241652610	241652708	1055618	0	+	0.561224	(0.515,0.57]	chr2	112493	2	INTRON	INTRON	ATG4B	ENSG00000168397.17	ENST00000405546.7:ENST00000402096.5:ENST00000491867.5:ENST00000400772.6:ENST00000494465.5:ENST00000483778.5:ENST00000404914.8:ENST00000465399.5:ENST00000419606.5:ENST00000475195.5:ENST00000479554.5:ENST00000468018.5:ENST00000482507.5:ENST00000493618.5:ENST00000425239.5:ENST00000400771.7:ENST00000415107.5:ENST00000430617.6:ENST00000344376.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	26	2	2.23915	2.350095	2.46104	0.0596178	0.032841	0.16883600000000001	0.145164
chr21	5564125	5564225	7364237	0	+	0.52	(0.515,0.57]	chr21	751617	99	INTRON	INTRON	ENSG00000274333	ENSG00000274333.4	ENST00000619252.4:ENST00000623449.3:ENST00000624627.3:ENST00000623436.3:ENST00000624368.3:ENST00000623914.3:ENST00000624516.1:ENST00000624412.3:ENST00000622939.3	lncRNA	lncRNA	lncRNA	lncRNA	2	26	2	2.23915	2.350095	2.46104	0.0596178	0.032841	0.16883600000000001	0.145164
chr22	20843018	20843118	7559526	0	-	0.52	(0.515,0.57]	chr22	773216	39	INTRON	INTRON	PI4KA	ENSG00000241973.11	ENST00000255882.11:ENST00000485963.5:ENST00000449120.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	26	2	2.23915	2.350095	2.46104	0.0596178	0.032841	0.16883600000000001	0.145164
chr3	5195681	5195781	1354263	0	+	0.53	(0.515,0.57]	chr3	142419	4	SS5_PROX	SS5_PROX:INTRON	EDEM1	ENSG00000134109.11	ENST00000434243.5:ENST00000256497.9:ENST00000465369.5:ENST00000445686.1:ENST00000492751.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	26	2	2.23915	2.350095	2.46104	0.0596178	0.032841	0.16883600000000001	0.145164
chr7	40052277	40052376	3311652	0	+	0.525253	(0.515,0.57]	chr7	307518	32	INTRON	INTRON	CDK13	ENSG00000065883.17	ENST00000340829.10:ENST00000181839.10:ENST00000613626.4:ENST00000646039.1:ENST00000643859.1:ENST00000484589.2:ENST00000643915.1:ENST00000645470.1:ENST00000642592.1	protein_coding	protein_coding	protein_coding	protein_coding	2	26	2	2.23915	2.350095	2.46104	0.0596178	0.032841	0.16883600000000001	0.145164
chr3	25749503	25749602	1642497	0	-	0.444444	(0.44,0.476]	chr3	168658	87	INTRON	INTRON	NGLY1	ENSG00000151092.18	ENST00000280700.10:ENST00000428257.5:ENST00000675217.1:ENST00000676225.1:ENST00000493324.5:ENST00000396649.7:ENST00000675178.1:ENST00000675680.1:ENST00000308710.9:ENST00000280699.13:ENST00000674841.1:ENST00000675234.1:ENST00000463611.2:ENST00000417874.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	13	159	2	2.19987	2.3500550000000002	2.50024	7.41088e-4	7.15015e-4	0.0250148	0.0244034
chr3	152448173	152448273	1536792	0	+	0.34	(0.32,0.35]	chr3	160040	4	SS5_PROX	SS5_PROX:INTRON	MBNL1	ENSG00000152601.18	ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000324210.10:ENST00000493459.5:ENST00000545754.5:ENST00000357472.7:ENST00000324196.9:ENST00000498502.5:ENST00000463374.5:ENST00000485910.5:ENST00000465907.6:ENST00000492948.5:ENST00000485509.5:ENST00000464596.5:ENST00000478535.1:ENST00000460166.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	118	2	1.93659	2.349995	2.7634	0.0108167	8.19858e-4	0.087129	0.026165
chr3	9476975	9477073	1359738	0	+	0.44898	(0.44,0.476]	chr3	142827	10	UTR3	UTR3:EXON_MRNA:INTRON	SETD5	ENSG00000168137.20	ENST00000402198.7:ENST00000682536.1:ENST00000663774.1:ENST00000665872.1:ENST00000666307.1:ENST00000406341.5:ENST00000407969.5:ENST00000399686.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	100	2	1.7899	2.349905	2.90991	0.0158205	3.20441e-4	0.101453	0.0159645
chr3	13348993	13349093	1617868	0	-	0.49	(0.476,0.515]	chr3	167134	53	INTRON	INTRON	NUP210	ENSG00000132182.13	ENST00000254508.7:ENST00000695490.1:ENST00000695491.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	121	2	2.00877	2.349905	2.69104	0.00338095	9.94264e-4	0.0517233	0.0290397
chr7	116958088	116958188	3386031	0	+	0.41	(0.408,0.44]	chr7	317121	1	SS3_PROX	SS3_PROX:INTRON	ST7:ST7-OT4	ENSG00000004866.22:ENSG00000214188.9	ENST00000393446.6:ENST00000265437.9:ENST00000393451.7:ENST00000438863.5:ENST00000393449.5:ENST00000443979.5:ENST00000323984.8:ENST00000417919.5:ENST00000446490.5:ENST00000397750.7:ENST00000466018.5:ENST00000471110.5:ENST00000470996.4:ENST00000397751.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:nonsense_mediated_decay:lncRNA	8	93	2	1.49971	2.3499	3.20009	0.0298505	4.59843e-4	0.142135	0.01978
chr1	51456835	51456935	453722	0	-	0.23	[0,0.28]	chr1	54395	83	INTRON	INTRON	EPS15	ENSG00000085832.17	ENST00000371733.8:ENST00000371730.6	protein_coding	protein_coding	protein_coding	protein_coding	6	110	2	1.63606	2.3498799999999997	3.0637	0.0468781	0.00104498	0.151917	0.0297408
chr2	111324615	111324713	1210089	0	-	0.438776	(0.408,0.44]	chr2	128858	47	EXON_LNCRNA	EXON_LNCRNA:SS3_PROX:INTRON	MIR4435-2HG	ENSG00000172965.17	ENST00000645030.2:ENST00000642191.1:ENST00000673798.1:ENST00000645051.2:ENST00000673649.1:ENST00000673962.1:ENST00000674132.1:ENST00000669658.1:ENST00000669917.1:ENST00000661559.1:ENST00000653687.1:ENST00000667670.1:ENST00000609220.2:ENST00000656760.1:ENST00000609902.6:ENST00000666683.1:ENST00000674070.1:ENST00000662335.1:ENST00000664422.1:ENST00000673775.1:ENST00000662889.1:ENST00000665096.1:ENST00000674092.1:ENST00000673958.1:ENST00000673770.1:ENST00000673961.1:ENST00000658936.1:ENST00000662635.1:ENST00000666204.1:ENST00000659458.1:ENST00000664443.1:ENST00000670295.1:ENST00000661655.1:ENST00000666390.1:ENST00000659079.1:ENST00000660442.1:ENST00000664009.1:ENST00000439362.6:ENST00000654473.1:ENST00000664999.1:ENST00000673728.1:ENST00000659791.1:ENST00000666144.1:ENST00000659933.1:ENST00000670715.1:ENST00000656303.1:ENST00000666367.1:ENST00000666652.1:ENST00000669050.1:ENST00000667218.1:ENST00000656067.1:ENST00000653568.1:ENST00000643013.1:ENST00000673866.1:ENST00000673700.1:ENST00000443467.6:ENST00000451884.6:ENST00000669875.1:ENST00000673653.1:ENST00000673988.1:ENST00000661945.1:ENST00000669515.1:ENST00000431385.6:ENST00000655573.1:ENST00000656416.1:ENST00000662384.1:ENST00000674037.1:ENST00000432818.5:ENST00000674013.1:ENST00000673843.1:ENST00000661707.1:ENST00000444301.5:ENST00000673964.1:ENST00000673959.1:ENST00000622940.1:ENST00000673845.1	lncRNA	lncRNA	lncRNA	lncRNA	5	61	2	1.87932	2.34987	2.82042	0.0172104	0.0120121	0.104099	0.0962115
chr2	176294263	176294363	925461	0	+	0.42	(0.408,0.44]	chr2	101669	235	INTRON	INTRON	MTX2	ENSG00000128654.14	ENST00000420864.5:ENST00000249442.11:ENST00000423461.6:ENST00000443241.5:ENST00000452865.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	110	2	1.70815	2.34981	2.99147	0.0159677	2.05062e-4	0.101453	0.0124557
chr4	2561334	2561434	1912763	0	+	0.49	(0.476,0.515]	chr4	191976	238	INTRON	INTRON	RNF4:FAM193A	ENSG00000063978.16:ENSG00000125386.16	ENST00000508235.1:ENST00000637812.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	65	2	2.3346	2.3498	2.365	0.0128901	0.00494807	0.0926667	0.0646039
chr18	9105877	9105977	6868625	0	+	0.28	[0,0.28]	chr18	680510	5	INTRON	INTRON	NDUFV2	ENSG00000178127.13	ENST00000577703.1:ENST00000318388.11:ENST00000583375.5:ENST00000400033.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	20	283	2	1.82333	2.34979	2.87625	0.00246962	0.00125669	0.0459908	0.0323608
chr5	10381299	10381399	2317925	0	+	0.43	(0.408,0.44]	chr5	224625	1	SS3_PROX	SS3_PROX:INTRON	MARCHF6	ENSG00000145495.16	ENST00000274140.10:ENST00000449913.6:ENST00000502795.5:ENST00000511802.5:ENST00000503788.5:ENST00000640713.1:ENST00000510872.5:ENST00000507863.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	73	2	1.28785	2.3496449999999998	3.41144	0.0494367	0.00178336	0.174213	0.0379201
chr9	123234136	123234236	4340136	0	-	0.43	(0.408,0.44]	chr9	398957	204	INTRON	INTRON	STRBP	ENSG00000165209.19	ENST00000348403.10:ENST00000360998.3:ENST00000407982.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	19	236	2	2.08104	2.3495549999999996	2.61807	0.0010314	5.71229e-5	0.029231300000000002	0.00617842
chr10	94563770	94563869	4499801	0	+	0.414141	(0.408,0.44]	chr10	414246	5	INTRON	INTRON	HELLS	ENSG00000119969.15	ENST00000239026.10:ENST00000371332.8:ENST00000348459.10:ENST00000419900.5:ENST00000394036.5:ENST00000394045.5:ENST00000462057.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	57	2	1.4947	2.349535	3.20437	0.0566065	0.00306596	0.167352	0.0509893
chr21	9330339	9330436	7367434	0	+	0.463918	(0.44,0.476]	chr21	751920	27	INTRON	INTRON	ENSG00000278932	ENSG00000278932.5	ENST00000622961.3:ENST00000686553.1:ENST00000691955.1:ENST00000625153.3:ENST00000692626.1:ENST00000685951.1:ENST00000686510.1:ENST00000692884.1	lncRNA	lncRNA	lncRNA	lncRNA	6	80	2	2.22103	2.349535	2.47804	0.00776319	0.00325838	0.0787356	0.0508595
chr1	6598846	6598946	368209	0	-	0.52	(0.515,0.57]	chr1	43254	4	SS5_PROX	SS5_PROX:INTRON	KLHL21	ENSG00000162413.17	ENST00000377663.3:ENST00000377658.8:ENST00000467612.5:ENST00000496707.5:ENST00000463043.1	protein_coding	protein_coding	protein_coding	protein_coding	9	93	2	2.1218	2.349465	2.57713	0.00198964	0.00176427	0.0411469	0.0376652
chr10	67885326	67885399	4440405	0	+	0.657534	(0.57,1]	chr10	409419	3	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	SIRT1	ENSG00000096717.12	ENST00000212015.11:ENST00000432464.5:ENST00000497639.5:ENST00000473922.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	34	2	1.80424	2.3494349999999997	2.89463	0.0129439	0.00788262	0.0991015	0.076155
chr20	4002061	4002161	7309273	0	-	0.53	(0.515,0.57]	chr20	744300	273	INTRON	INTRON	RNF24	ENSG00000101236.17	ENST00000336095.10:ENST00000358395.11:ENST00000545616.2	protein_coding	protein_coding	protein_coding	protein_coding	7	58	2	1.44339	2.34943	3.25547	0.0352285	0.00261721	0.150284	0.0455413
chr16	66733351	66733448	6502049	0	-	0.463918	(0.44,0.476]	chr16	629015	10	EXON_MRNA	EXON_MRNA:INTRON	DYNC1LI2	ENSG00000135720.13	ENST00000258198.7:ENST00000443351.6:ENST00000567499.5:ENST00000565532.5:ENST00000440564.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	101	2	2.0592	2.3494099999999998	2.63962	0.00556585	0.00126329	0.0648867	0.0329641
chr16	70403788	70403888	6511111	0	-	0.44	(0.408,0.44]	chr16	630689	23	INTRON	INTRON	ST3GAL2	ENSG00000157350.13	ENST00000342907.3:ENST00000566097.1:ENST00000561708.1:ENST00000567586.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	141	2	2.18716	2.349215	2.51127	0.00160247	7.23431e-4	0.0367961	0.0247457
chr2	144504535	144504633	1241653	0	-	0.438776	(0.408,0.44]	chr2	131742	10	EXON_LNCRNA	EXON_LNCRNA:INTRON	ZEB2	ENSG00000169554.23	ENST00000636471.1:ENST00000627532.3:ENST00000638128.1:ENST00000637304.1:ENST00000636179.1:ENST00000419938.5:ENST00000409487.7:ENST00000636732.2:ENST00000636026.2:ENST00000675069.1:ENST00000689298.1:ENST00000539609.7:ENST00000558170.6:ENST00000303660.8:ENST00000427902.5:ENST00000637267.2:ENST00000392861.6:ENST00000431672.4:ENST00000409211.5:ENST00000465308.5:ENST00000434448.5:ENST00000472146.5:ENST00000461784.3:ENST00000476394.5:ENST00000637591.2:ENST00000479735.1:ENST00000453352.5:ENST00000435831.5:ENST00000444559.5:ENST00000630572.2:ENST00000484313.3:ENST00000629955.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	62	2	1.49789	2.3491150000000003	3.20034	0.0390091	0.00398025	0.161009	0.0549214
chr7	152310475	152310575	3680029	0	-	0.51	(0.476,0.515]	chr7	341628	4	SS3_PROX	SS3_PROX:INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000684262.1:ENST00000490130.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	56	2	1.87147	2.3491	2.82673	0.0157856	0.0134403	0.109464	0.0946278
chr12	31319361	31319460	5302788	0	-	0.525253	(0.515,0.57]	chr12	504668	139	INTRON	INTRON	SINHCAF	ENSG00000139146.14	ENST00000337682.9:ENST00000539409.5:ENST00000454658.6:ENST00000542983.1:ENST00000539004.5:ENST00000543615.1:ENST00000536836.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	43	2	1.8661	2.34899	2.83188	0.0274846	0.0108207	0.123904	0.0920575
chr14	21239857	21239957	5834870	0	-	0.37	(0.35,0.378]	chr14	554459	30	INTRON	INTRON	HNRNPC	ENSG00000092199.19	ENST00000336053.10:ENST00000553300.6:ENST00000554969.5:ENST00000556142.5:ENST00000554455.5:ENST00000430246.6:ENST00000553753.5:ENST00000555309.5:ENST00000555914.5:ENST00000557442.5:ENST00000556628.5:ENST00000556513.5:ENST00000555883.5:ENST00000557201.5:ENST00000556897.5:ENST00000420743.6:ENST00000554539.5:ENST00000554383.5:ENST00000555215.5:ENST00000555137.5:ENST00000554891.5:ENST00000556226.5:ENST00000555176.5:ENST00000553614.5:ENST00000557336.1:ENST00000557768.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	147	2	2.16289	2.348935	2.53498	0.00138346	0.00135014	0.0338784	0.0338354
chr3	25741944	25742043	1642421	0	-	0.40404	(0.378,0.408]	chr3	168658	11	INTRON	INTRON	NGLY1	ENSG00000151092.18	ENST00000280700.10:ENST00000428257.5:ENST00000675217.1:ENST00000676225.1:ENST00000493324.5:ENST00000396649.7:ENST00000675178.1:ENST00000675680.1:ENST00000308710.9:ENST00000280699.13:ENST00000674841.1:ENST00000675234.1:ENST00000463611.2:ENST00000417874.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	64	2	1.50417	2.348925	3.19368	0.0384675	0.00426861	0.159169	0.0573912
chr8	116723416	116723516	4033903	0	-	0.39	(0.378,0.408]	chr8	368058	258	INTRON	INTRON	EIF3H	ENSG00000147677.12	ENST00000521861.6:ENST00000276682.8:ENST00000518949.5:ENST00000518995.5:ENST00000522800.5:ENST00000518034.5:ENST00000517974.1:ENST00000522453.1:ENST00000519046.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	64	2	1.50417	2.348925	3.19368	0.0384675	0.00426861	0.159169	0.0573912
chr3	13418259	13418359	1618581	0	-	0.53	(0.515,0.57]	chr3	167237	180	INTRON	INTRON	NUP210	ENSG00000132182.13	ENST00000254508.7:ENST00000420141.3:ENST00000695492.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	53	2	1.44237	2.3489199999999997	3.25547	0.0456196	0.00261721	0.164236	0.0455413
chr7	22855464	22855556	3288695	0	+	0.380435	(0.378,0.408]	chr7	305426	1	INTRON	INTRON	SNHG26	ENSG00000228649.10	ENST00000415611.8:ENST00000667557.1:ENST00000422542.4:ENST00000656301.1:ENST00000661147.1:ENST00000656687.2:ENST00000662021.1:ENST00000691516.1:ENST00000685098.1:ENST00000689892.1:ENST00000663057.1:ENST00000657608.1:ENST00000688000.1:ENST00000690219.1:ENST00000658124.1:ENST00000661582.1:ENST00000671680.1	lncRNA	lncRNA	lncRNA	lncRNA	4	55	2	2.06535	2.34891	2.63247	0.0215745	0.0159849	0.123836	0.101453
chr1	21754201	21754298	396575	0	-	0.474227	(0.44,0.476]	chr1	47332	7	INTRON	INTRON	USP48	ENSG00000090686.16	ENST00000400301.5:ENST00000308271.14:ENST00000529637.5:ENST00000421625.6:ENST00000527823.5:ENST00000532737.1	protein_coding	protein_coding	protein_coding	protein_coding	4	49	2	1.61163	2.34877	3.08591	0.0598319	0.00481262	0.169278	0.0638089
chr9	120537026	120537120	4333458	0	-	0.446809	(0.44,0.476]	chr9	398137	1	INTRON	INTRON	CDK5RAP2	ENSG00000136861.19	ENST00000349780.9:ENST00000360190.8:ENST00000687279.1:ENST00000687633.1:ENST00000684780.1:ENST00000687311.1:ENST00000690814.1:ENST00000686842.1:ENST00000693714.1:ENST00000693386.1:ENST00000692746.1:ENST00000686376.1:ENST00000692155.1:ENST00000690646.1:ENST00000693433.1:ENST00000688923.1:ENST00000473282.6:ENST00000480112.5:ENST00000685866.1:ENST00000689688.1:ENST00000416449.6:ENST00000691504.1:ENST00000360822.8:ENST00000693728.1:ENST00000690474.1:ENST00000693137.1:ENST00000693702.1:ENST00000481266.2:ENST00000472883.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	49	2	1.61163	2.34877	3.08591	0.0598319	0.00481262	0.169278	0.0638089
chr2	32456141	32456240	731793	0	+	0.333333	(0.32,0.35]	chr2	84399	18	INTRON	INTRON	BIRC6	ENSG00000115760.15	ENST00000421745.7:ENST00000648282.1	protein_coding	protein_coding	protein_coding	protein_coding	3	47	2	2.25173	2.348765	2.4458	0.0425977	0.0180122	0.148082	0.114436
chr7	152223814	152223914	3679141	0	-	0.34	(0.32,0.35]	chr7	341545	4	SS5_PROX	SS5_PROX:INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000683200.1:ENST00000682283.1:ENST00000473186.5:ENST00000679882.1:ENST00000680969.1:ENST00000681033.1:ENST00000679645.1:ENST00000684550.1:ENST00000489110.2:ENST00000681838.1:ENST00000683490.1:ENST00000684623.1:ENST00000418673.2:ENST00000684140.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	47	2	2.25173	2.348765	2.4458	0.0425977	0.0180122	0.148082	0.114436
chr1	193170390	193170490	285105	0	+	0.37	(0.35,0.378]	chr1	32819	88	INTRON	INTRON	CDC73	ENSG00000134371.14	ENST00000649895.1:ENST00000643006.1:ENST00000367435.5:ENST00000650197.1:ENST00000648071.1:ENST00000635846.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	54	2	2.15877	2.348665	2.53856	0.0326077	0.0102036	0.133687	0.089002
chr16	89519380	89519479	6420451	0	+	0.535354	(0.515,0.57]	chr16	616212	27	EXON_LNCRNA	EXON_LNCRNA:SS3_PROX:INTRON	SPG7	ENSG00000197912.16	ENST00000647079.1:ENST00000646303.1:ENST00000643649.1:ENST00000643307.1:ENST00000566371.6:ENST00000644498.1:ENST00000645897.1:ENST00000643668.1:ENST00000644225.1:ENST00000645818.2:ENST00000645977.1:ENST00000645063.1:ENST00000646263.1:ENST00000643724.1:ENST00000644781.1:ENST00000644901.1:ENST00000645042.1:ENST00000646531.1:ENST00000646930.1:ENST00000642436.1:ENST00000644210.1:ENST00000564047.2:ENST00000646589.1:ENST00000268704.7:ENST00000646826.1:ENST00000646716.1:ENST00000643345.1:ENST00000341316.6:ENST00000645533.1:ENST00000646958.1:ENST00000642371.1:ENST00000643105.1:ENST00000645354.1:ENST00000643957.1:ENST00000642334.1:ENST00000647227.1:ENST00000562775.2:ENST00000568151.1:ENST00000646445.1:ENST00000564409.2:ENST00000643954.1:ENST00000646399.1:ENST00000644671.1:ENST00000643178.1:ENST00000611189.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	109	2	2.28079	2.34861	2.41643	0.00145207	8.60377e-4	0.0349828	0.0267605
chr11	65777657	65777756	4967277	0	-	0.575758	(0.57,1]	chr11	468219	39	UTR3	UTR3:EXON_MRNA	AP5B1	ENSG00000254470.3	ENST00000532090.3	protein_coding	protein_coding	protein_coding	protein_coding	3	23	2	2.33295	2.3485300000000002	2.36411	0.0408868	0.0122896	0.161534	0.091087
chr7	128458915	128459015	3406883	0	+	0.4	(0.378,0.408]	chr7	318259	6	INTRON	INTRON	ENSG00000273184	ENSG00000273184.1	ENST00000462662.1	lncRNA	lncRNA	lncRNA	lncRNA	4	51	2	2.09402	2.34849	2.60296	0.0267851	0.0126438	0.123349	0.0982897
chr1	35951260	35951360	71346	0	+	0.25	[0,0.28]	chr1	9138	50	INTRON	INTRON	AGO3	ENSG00000126070.20	ENST00000324350.9:ENST00000397828.3:ENST00000634486.1:ENST00000373191.9:ENST00000246314.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	43	2	2.33055	2.34846	2.36637	0.062338	0.0500615	0.175343	0.17488
chr3	185666668	185666767	1884752	0	-	0.252525	[0,0.28]	chr3	188520	79	INTRON	INTRON	IGF2BP2	ENSG00000073792.16	ENST00000382199.7:ENST00000346192.7:ENST00000457616.6:ENST00000421047.3:ENST00000494906.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	43	2	2.33055	2.34846	2.36637	0.062338	0.0500615	0.175343	0.17488
chr9	78011819	78011919	4271748	0	-	0.26	[0,0.28]	chr9	392880	891	INTRON	INTRON	GNAQ	ENSG00000156052.11	ENST00000286548.9:ENST00000411677.1	protein_coding	protein_coding	protein_coding	protein_coding	2	43	2	2.33055	2.34846	2.36637	0.062338	0.0500615	0.175343	0.17488
chrX	13338148	13338248	7622336	0	+	0.25	[0,0.28]	chrX	780342	2	SS5_PROX	SS5_PROX:INTRON	LINC01203	ENSG00000226985.7	ENST00000669963.1:ENST00000661545.1:ENST00000659526.1:ENST00000656410.1:ENST00000661104.1:ENST00000456091.2:ENST00000655502.1:ENST00000671651.1:ENST00000656979.1:ENST00000656271.1:ENST00000661629.1:ENST00000661464.1:ENST00000419566.5:ENST00000668192.1:ENST00000665887.1:ENST00000659191.1:ENST00000667868.1:ENST00000653729.1:ENST00000656111.1	lncRNA	lncRNA	lncRNA	lncRNA	2	43	2	2.33055	2.34846	2.36637	0.062338	0.0500615	0.175343	0.17488
chr2	86444431	86444531	822962	0	+	0.41	(0.408,0.44]	chr2	91901	5	INTRON	INTRON	KDM3A	ENSG00000115548.17	ENST00000452034.5:ENST00000409556.5:ENST00000312912.10:ENST00000441719.5:ENST00000409064.5:ENST00000427678.1:ENST00000498528.1:ENST00000466058.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	55	2	2.00228	2.3484249999999998	2.69457	0.0389732	0.00331036	0.143072	0.0527031
chr22	19105259	19105359	7551843	0	-	0.47	(0.44,0.476]	chr22	771903	154	INTRON	INTRON	DGCR2	ENSG00000070413.20	ENST00000537045.5:ENST00000545799.5:ENST00000263196.12:ENST00000389262.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	83	2	1.78423	2.348375	2.91252	0.0143065	0.00164027	0.104058	0.0369207
chr7	65886848	65886948	3323013	0	+	0.44	(0.408,0.44]	chr7	309012	129	INTRON	INTRON	VKORC1L1	ENSG00000196715.7	ENST00000360768.5:ENST00000648187.1:ENST00000648179.1:ENST00000434382.2	protein_coding	protein_coding	protein_coding	protein_coding	6	62	2	1.45162	2.34836	3.2451	0.0451203	0.00337792	0.163518	0.0516884
chr1	35181700	35181795	420480	0	-	0.336842	(0.32,0.35]	chr1	50650	2	INTRON	INTRON	SFPQ	ENSG00000116560.12	ENST00000470472.5:ENST00000460428.5	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	22	316	2	2.25818	2.34832	2.43846	3.6691e-4	2.146e-4	0.017788000000000002	0.0128593
chr15	28276892	28276991	6123608	0	-	0.484848	(0.476,0.515]	chr15	583381	15	INTRON	INTRON	HERC2	ENSG00000128731.18	ENST00000261609.13:ENST00000564734.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	40	2	2.06491	2.348295	2.63168	0.0304733	0.0237106	0.143385	0.118716
chr19	9423825	9423925	7132446	0	-	0.48	(0.476,0.515]	chr19	718745	32	INTRON	INTRON	ZNF266	ENSG00000174652.20	ENST00000592904.7:ENST00000588221.5:ENST00000588933.5:ENST00000590306.5:ENST00000651268.1:ENST00000592292.5	protein_coding	protein_coding	protein_coding	protein_coding	3	40	2	2.06491	2.348295	2.63168	0.0304733	0.0237106	0.143385	0.118716
chr3	43727603	43727703	1410554	0	+	0.48	(0.476,0.515]	chr3	147966	50	INTRON	INTRON	ABHD5	ENSG00000011198.10	ENST00000649763.1:ENST00000454293.2:ENST00000463153.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	40	2	2.06491	2.348295	2.63168	0.0304733	0.0237106	0.143385	0.118716
chr6	107432598	107432697	3181644	0	-	0.50505	(0.476,0.515]	chr6	296346	979	INTRON	INTRON	PDSS2	ENSG00000164494.12	ENST00000369037.9:ENST00000369031.4	protein_coding	protein_coding	protein_coding	protein_coding	3	40	2	2.06491	2.348295	2.63168	0.0304733	0.0237106	0.143385	0.118716
chr8	23253456	23253556	3714716	0	+	0.51	(0.476,0.515]	chr8	345107	6	INTRON	INTRON	CHMP7	ENSG00000147457.14	ENST00000397677.6:ENST00000313219.8:ENST00000519414.5:ENST00000517325.5:ENST00000519529.1:ENST00000519984.1:ENST00000519503.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	40	2	2.06491	2.348295	2.63168	0.0304733	0.0237106	0.143385	0.118716
chr6	87543228	87543327	3152159	0	-	0.494949	(0.476,0.515]	chr6	294026	7	INTRON	INTRON	RARS2	ENSG00000146282.19	ENST00000691533.1:ENST00000493269.2:ENST00000685069.1:ENST00000691725.1:ENST00000369536.10:ENST00000693431.1:ENST00000685408.1:ENST00000693327.1:ENST00000691205.1:ENST00000689174.1:ENST00000692684.1:ENST00000686988.1:ENST00000690622.1:ENST00000689206.1:ENST00000688532.1:ENST00000686154.1:ENST00000686407.1:ENST00000685701.1:ENST00000689561.1:ENST00000691238.1:ENST00000685336.1:ENST00000686284.1:ENST00000687586.1:ENST00000685376.1:ENST00000685881.1:ENST00000691815.1:ENST00000687090.1:ENST00000451155.2:ENST00000687437.1:ENST00000692394.1:ENST00000687729.1:ENST00000693605.1:ENST00000687909.1:ENST00000688391.1:ENST00000690884.1:ENST00000692843.1:ENST00000684790.1:ENST00000692270.1:ENST00000685219.1:ENST00000689952.1:ENST00000687579.1:ENST00000686857.1:ENST00000690205.1:ENST00000690705.1:ENST00000686142.1:ENST00000688106.1:ENST00000686196.1:ENST00000687078.1:ENST00000690555.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	65	2	1.88582	2.34829	2.81076	0.0273268	0.00203568	0.123904	0.0417667
chr21	31686133	31686233	7437349	0	-	0.44	(0.408,0.44]	chr21	758608	4	SS3_PROX	SS3_PROX:INTRON	SCAF4	ENSG00000156304.15	ENST00000286835.12:ENST00000399804.5:ENST00000434667.3:ENST00000467731.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	92	2	2.01032	2.3482700000000003	2.68622	0.00418848	0.00377558	0.0572071	0.0562562
chr1	9541145	9541245	17149	0	+	0.48	(0.476,0.515]	chr1	1570	10	INTRON	INTRON	SLC25A33	ENSG00000171612.7	ENST00000302692.7	protein_coding	protein_coding	protein_coding	protein_coding	5	65	2	2.01618	2.348205	2.68023	0.0180082	0.00353671	0.106756	0.0546236
chr2	167900431	167900531	1258806	0	-	0.5	(0.476,0.515]	chr2	133335	3	SS5_PROX	SS5_PROX:INTRON	B3GALT1-AS1	ENSG00000235335.3	ENST00000430546.2:ENST00000657553.1:ENST00000670221.1:ENST00000436982.2	lncRNA	lncRNA	lncRNA	lncRNA	5	65	2	2.01618	2.348205	2.68023	0.0180082	0.00353671	0.106756	0.0546236
chr10	125094403	125094503	4713674	0	-	0.57	(0.515,0.57]	chr10	434903	57	INTRON	INTRON	CTBP2	ENSG00000175029.17	ENST00000337195.9:ENST00000411419.6:ENST00000494626.6:ENST00000531469.5:ENST00000460976.5:ENST00000476817.1:ENST00000530884.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	48	2	1.44089	2.34818	3.25547	0.0617046	0.00261721	0.193423	0.0455413
chr8	129472460	129472559	4059999	0	-	0.353535	(0.35,0.378]	chr8	369602	152	INTRON	INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1:ENST00000676273.1:ENST00000667643.1:ENST00000668791.1:ENST00000663716.1:ENST00000663572.1:ENST00000676148.1:ENST00000667962.1:ENST00000674877.1:ENST00000675316.1:ENST00000674656.1:ENST00000446592.7:ENST00000667341.1:ENST00000675186.1:ENST00000652971.1:ENST00000661447.1:ENST00000674863.1:ENST00000675498.1:ENST00000675527.1:ENST00000676108.1:ENST00000657647.1:ENST00000675589.1:ENST00000675913.1:ENST00000675109.1:ENST00000671632.1:ENST00000671311.1:ENST00000676099.1:ENST00000660652.1:ENST00000675522.1:ENST00000675183.1:ENST00000658861.1:ENST00000663991.1:ENST00000675044.1:ENST00000675435.1:ENST00000674639.1:ENST00000676069.1:ENST00000675532.1:ENST00000674762.1:ENST00000523151.6:ENST00000675948.1:ENST00000665364.1:ENST00000657251.1:ENST00000675166.1:ENST00000674883.1:ENST00000675867.1:ENST00000674580.1:ENST00000675393.1:ENST00000520048.1:ENST00000674906.1:ENST00000676030.1:ENST00000670588.1:ENST00000675072.1:ENST00000664936.1:ENST00000652914.1:ENST00000657069.1	lncRNA	lncRNA	lncRNA	lncRNA	7	105	2	2.20096	2.34814	2.49532	0.0087123	0.00165224	0.0844834	0.0369207
chr5	6616029	6616127	2566601	0	-	0.418367	(0.408,0.44]	chr5	245925	39	INTRON	INTRON	NSUN2	ENSG00000037474.15	ENST00000264670.11:ENST00000504374.5:ENST00000505892.5:ENST00000506139.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	42	2	2.11447	2.34813	2.58179	0.0285207	0.024638	0.131869	0.12666
chr13	25310215	25310315	5457259	0	+	0.44	(0.408,0.44]	chr13	522894	2	SS5_PROX	SS5_PROX:INTRON	NUP58	ENSG00000139496.17	ENST00000481980.2:ENST00000490231.6:ENST00000695571.1:ENST00000477876.2:ENST00000695572.1:ENST00000463407.6:ENST00000695573.1:ENST00000381736.8:ENST00000695583.1:ENST00000465068.5:ENST00000466694.6:ENST00000381718.8:ENST00000695575.1:ENST00000695574.1:ENST00000495460.2:ENST00000381747.7:ENST00000695576.1:ENST00000394327.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	101	2	1.70477	2.3481199999999998	2.99147	0.0215835	2.05062e-4	0.114814	0.0124557
chrX	151957781	151957879	7908457	0	-	0.438776	(0.408,0.44]	chrX	804778	4	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	GABRE	ENSG00000102287.19	ENST00000370328.4:ENST00000486255.1:ENST00000441219.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	55	2	2.33431	2.34808	2.36185	0.0133164	0.0129219	0.0990564	0.094512
chr21	37435686	37435785	7406918	0	+	0.292929	(0.28,0.32]	chr21	754891	49	INTRON	INTRON	DYRK1A	ENSG00000157540.22	ENST00000646523.1:ENST00000647425.1:ENST00000647188.2:ENST00000647504.1:ENST00000644942.1:ENST00000338785.8:ENST00000643624.1:ENST00000643551.1:ENST00000426672.6:ENST00000398960.7:ENST00000646548.1:ENST00000645424.1:ENST00000643854.1:ENST00000455097.6:ENST00000642309.1:ENST00000645774.1:ENST00000398956.2	protein_coding	protein_coding	protein_coding	protein_coding	3	51	2	2.24061	2.34803	2.45545	0.0438092	0.0194267	0.14901	0.119831
chr4	105423381	105423481	2216170	0	-	0.32	(0.28,0.32]	chr4	217234	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	PPA2	ENSG00000138777.20	ENST00000341695.10:ENST00000348706.9:ENST00000509031.5:ENST00000351450.10:ENST00000354147.7:ENST00000432483.6:ENST00000515567.5:ENST00000503171.5:ENST00000510015.5:ENST00000509426.5:ENST00000508518.5:ENST00000514209.5:ENST00000506815.5:ENST00000457404.6:ENST00000502833.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	51	2	2.24061	2.34803	2.45545	0.0438092	0.0194267	0.14901	0.119831
chrX	44979604	44979704	7649669	0	+	0.31	(0.28,0.32]	chrX	782744	25	INTRON	INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000675440.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000621147.5:ENST00000475233.1:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	51	2	2.24061	2.34803	2.45545	0.0438092	0.0194267	0.14901	0.119831
chr9	37319368	37319467	4119655	0	+	0.343434	(0.32,0.35]	chr9	375411	133	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000461038.5:ENST00000488607.5:ENST00000463625.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	57	2	1.61669	2.34802	3.07935	0.0578816	0.00724137	0.188651	0.0729826
chr1	85258023	85258123	497321	0	-	0.55	(0.515,0.57]	chr1	58954	1	SS5_PROX	SS5_PROX:INTRON	C1orf52	ENSG00000162642.14	ENST00000294661.8:ENST00000471115.6:ENST00000344356.5:ENST00000493514.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	35	2	2.26012	2.348005	2.43589	0.0370871	0.0160033	0.139194	0.109464
chr6	17954124	17954223	3068218	0	-	0.535354	(0.515,0.57]	chr6	285105	23	INTRON	INTRON	KIF13A	ENSG00000137177.20	ENST00000378814.9:ENST00000259711.11:ENST00000378826.6:ENST00000378843.6:ENST00000636847.1:ENST00000507576.1:ENST00000505588.1:ENST00000502704.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	35	2	2.26012	2.348005	2.43589	0.0370871	0.0160033	0.139194	0.109464
chr6	108258363	108258463	3184590	0	-	0.56	(0.515,0.57]	chr6	296565	350	INTRON	INTRON	SNX3	ENSG00000112335.15	ENST00000230085.13:ENST00000368979.6:ENST00000426155.6:ENST00000349379.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	35	2	2.26012	2.348005	2.43589	0.0370871	0.0160033	0.139194	0.109464
chr12	56668706	56668803	5335879	0	-	0.268041	[0,0.28]	chr12	510168	21	INTRON	INTRON	PTGES3	ENSG00000110958.16	ENST00000537473.2:ENST00000614328.4:ENST00000262033.11:ENST00000414274.7:ENST00000436399.6:ENST00000448157.6:ENST00000456859.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	58	2	2.20073	2.348	2.49527	0.0436497	0.0235708	0.14882	0.128907
chr21	36355527	36355626	7404055	0	+	0.414141	(0.408,0.44]	chr21	754328	58	INTRON	INTRON	MORC3	ENSG00000159256.13	ENST00000400485.6:ENST00000487909.5:ENST00000485299.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	67	2	1.64062	2.347975	3.05533	0.0557275	6.50769e-4	0.165463	0.0231135
chr8	41737963	41738063	3938462	0	-	0.37	(0.35,0.378]	chr8	361117	35	INTRON	INTRON	ANK1	ENSG00000029534.21	ENST00000347528.8:ENST00000265709.13:ENST00000289734.13	protein_coding	protein_coding	protein_coding	protein_coding	9	125	2	2.27878	2.34794	2.4171	0.0041508	8.92719e-4	0.0568675	0.0273457
chr3	42213021	42213120	1405678	0	+	0.424242	(0.408,0.44]	chr3	147607	5	INTRON	INTRON	TRAK1	ENSG00000182606.17	ENST00000487159.5:ENST00000672026.1:ENST00000673621.2:ENST00000327628.10:ENST00000396175.5	protein_coding	protein_coding	protein_coding	protein_coding	9	83	2	1.28254	2.3478849999999998	3.41323	0.047205	0.00129989	0.152612	0.0333764
chr19	45512569	45512669	7080250	0	+	0.52	(0.515,0.57]	chr19	708213	44	INTRON	INTRON	VASP	ENSG00000125753.14	ENST00000589627.1:ENST00000245932.11:ENST00000592139.1:ENST00000590603.1:ENST00000586014.5:ENST00000586619.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	67	2	2.15866	2.347855	2.53705	0.0100547	0.00186194	0.0848452	0.039946
chr15	44540715	44540814	6015422	0	+	0.424242	(0.408,0.44]	chr15	573008	29	INTRON	INTRON	EIF3J	ENSG00000104131.13	ENST00000424492.7:ENST00000261868.10:ENST00000535391.5	protein_coding	protein_coding	protein_coding	protein_coding	5	71	2	2.21238	2.34782	2.48326	0.0193525	0.00324772	0.119831	0.0508595
chr16	11841405	11841501	6445789	0	-	0.260417	[0,0.28]	chr16	620994	1	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	RSL1D1	ENSG00000171490.13	ENST00000571133.6:ENST00000396503.7:ENST00000573618.5:ENST00000355674.9:ENST00000573029.1:ENST00000573251.5:ENST00000574823.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	161	2	1.63189	2.347795	3.0637	0.0209548	0.00104498	0.112046	0.0297408
chr7	152036914	152037013	3449623	0	+	0.292929	(0.28,0.32]	chr7	322435	88	INTRON	INTRON	GALNT11	ENSG00000178234.13	ENST00000430044.7:ENST00000482812.1:ENST00000431668.1:ENST00000446096.5:ENST00000447778.5:ENST00000423337.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	70	2	1.91611	2.34764	2.77917	0.0539102	0.00285651	0.164153	0.0494641
chr3	5179653	5179750	1354159	0	+	0.247423	[0,0.28]	chr3	142395	10	UTR3	UTR3:EXON_MRNA	ARL8B	ENSG00000134108.14	ENST00000256496.8:ENST00000419534.2	protein_coding	protein_coding	protein_coding	protein_coding	8	147	2	2.15272	2.347545	2.54237	0.00447054	0.00442438	0.061054	0.0593175
chr4	739308	739407	1908131	0	+	0.545455	(0.515,0.57]	chr4	191240	14	INTRON	INTRON	PCGF3	ENSG00000185619.18	ENST00000362003.9:ENST00000470161.6:ENST00000430644.5:ENST00000440452.5:ENST00000433814.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	35	2	1.86007	2.34754	2.83501	0.0526611	0.0117686	0.178401	0.0894475
chr13	72763050	72763150	5616240	0	-	0.41	(0.408,0.44]	chr13	535675	2	SS5_PROX	SS5_PROX:INTRON	DIS3	ENSG00000083520.15	ENST00000377767.9:ENST00000377780.8:ENST00000545453.5:ENST00000490646.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	41	2	2.33431	2.3475200000000003	2.36073	0.0481658	0.0129219	0.153019	0.0990564
chr16	89578356	89578456	6420947	0	+	0.47	(0.44,0.476]	chr16	616337	1	SS3_PROX	SS3_PROX:INTRON	CPNE7	ENSG00000178773.15	ENST00000319518.13:ENST00000268720.9:ENST00000525982.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	106	2	1.2812	2.347515	3.41383	0.0432173	1.54313e-4	0.162255	0.0113252
chrX	24174888	24174988	7631258	0	+	0.58	(0.57,1]	chrX	781545	1	SS3_PROX	SS3_PROX:INTRON	ZFX	ENSG00000005889.16	ENST00000428571.5:ENST00000539115.5:ENST00000379188.7:ENST00000304543.10:ENST00000419690.5:ENST00000379177.5:ENST00000459724.1:ENST00000338565.3:ENST00000474385.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	32	2	2.161	2.347415	2.53383	0.02547	0.00462668	0.12011	0.062717
chr10	73009555	73009639	4646959	0	-	0.22619	[0,0.28]	chr10	427471	4	SS5_PROX	SS5_PROX:INTRON	P4HA1	ENSG00000122884.13	ENST00000394890.7:ENST00000307116.6:ENST00000373008.6:ENST00000440381.5:ENST00000263556.3	protein_coding	protein_coding	protein_coding	protein_coding	7	132	2	2.34112	2.3474000000000004	2.35368	0.0089545	0.00315678	0.0800073	0.0515658
chr1	1527962	1528062	2027	0	+	0.48	(0.476,0.515]	chr1	518	1	SS5_PROX	SS5_PROX:INTRON	ATAD3A	ENSG00000197785.14	ENST00000378756.8:ENST00000672388.1:ENST00000378755.9:ENST00000339113.9:ENST00000536055.6:ENST00000400830.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	117	2	1.71811	2.34737	2.97663	0.0116533	2.26055e-4	0.0890315	0.0132815
chr18	9149948	9150048	6869062	0	+	0.56	(0.515,0.57]	chr18	680561	117	INTRON	INTRON	ANKRD12	ENSG00000101745.17	ENST00000585234.5:ENST00000262126.9:ENST00000577992.1:ENST00000540578.6:ENST00000581635.5:ENST00000400020.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	89	2	1.94449	2.34736	2.75023	0.0122196	2.30309e-4	0.0910127	0.0133889
chr9	125334478	125334574	4199001	0	+	0.25	[0,0.28]	chr9	383237	15	INTRON	INTRON	GAPVD1	ENSG00000165219.23	ENST00000497580.5:ENST00000297933.11:ENST00000470056.5:ENST00000394105.6:ENST00000394083.6:ENST00000495955.5:ENST00000467750.5:ENST00000394104.6:ENST00000312123.13:ENST00000431329.5:ENST00000436712.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	79	2	2.09899	2.347345	2.5957	0.0371453	0.00656974	0.139304	0.0736092
chr1	21774464	21774564	396783	0	-	0.51	(0.476,0.515]	chr1	47345	163	INTRON	INTRON	USP48	ENSG00000090686.16	ENST00000400301.5:ENST00000308271.14:ENST00000529637.5:ENST00000421625.6:ENST00000527823.5:ENST00000532737.1:ENST00000489108.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	74	2	1.99499	2.34733	2.69967	0.0195838	0.00408599	0.109483	0.0581771
chr2	131091618	131091717	1229075	0	-	0.424242	(0.408,0.44]	chr2	130994	86	INTRON	INTRON	FAM168B	ENSG00000152102.18	ENST00000389915.4:ENST00000409185.5	protein_coding	protein_coding	protein_coding	protein_coding	10	120	2	1.35901	2.347315	3.33562	0.0428833	2.6898e-5	0.148082	0.00408175
chr1	45998887	45998985	95771	0	+	0.489796	(0.476,0.515]	chr1	12727	7	INTRON	INTRON	MAST2	ENSG00000086015.23	ENST00000361297.7:ENST00000372008.6:ENST00000674079.1:ENST00000482881.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	54	2	2.31726	2.3472850000000003	2.37731	0.015077	0.0111793	0.0994339	0.0937192
chr22	19464601	19464701	7554748	0	-	0.49	(0.476,0.515]	chr22	772371	61	INTRON	INTRON	UFD1	ENSG00000070010.19	ENST00000263202.15:ENST00000399523.5:ENST00000459854.5:ENST00000466373.1:ENST00000447868.5:ENST00000421968.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	54	2	2.31726	2.3472850000000003	2.37731	0.015077	0.0111793	0.0994339	0.0937192
chr19	12538439	12538538	7139826	0	-	0.464646	(0.44,0.476]	chr19	720329	56	INTRON	INTRON	ZNF564	ENSG00000249709.8	ENST00000339282.12:ENST00000427105.1:ENST00000596193.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	30	2	2.29842	2.34723	2.39604	0.0552483	0.0404291	0.165463	0.161534
chr3	52258235	52258335	1698769	0	-	0.45	(0.44,0.476]	chr3	174684	3	SS5_PROX	SS5_PROX:INTRON	WDR82	ENSG00000164091.12	ENST00000296490.8:ENST00000487402.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	30	2	2.29842	2.34723	2.39604	0.0552483	0.0404291	0.165463	0.161534
chr5	53958017	53958117	2617384	0	-	0.47	(0.44,0.476]	chr5	248835	460	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	30	2	2.29842	2.34723	2.39604	0.0552483	0.0404291	0.165463	0.161534
chr1	77630249	77630349	492933	0	-	0.47	(0.44,0.476]	chr1	58292	452	INTRON	INTRON	ZZZ3	ENSG00000036549.13	ENST00000370801.8:ENST00000481346.5:ENST00000476275.5:ENST00000370798.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	65	2	2.22103	2.34721	2.47339	0.0090196	0.00776319	0.080367	0.0787356
chr1	21750714	21750811	396535	0	-	0.515464	(0.515,0.57]	chr1	47316	21	INTRON	INTRON	USP48	ENSG00000090686.16	ENST00000400301.5:ENST00000308271.14:ENST00000529637.5:ENST00000421625.6	protein_coding	protein_coding	protein_coding	protein_coding	3	35	2	1.7074	2.347085	2.98677	0.0779432	0.00632549	0.196685	0.0722266
chr14	105454901	105455001	5831006	0	+	0.51	(0.476,0.515]	chr14	553606	2	SS5_PROX	SS5_PROX:INTRON	MTA1	ENSG00000182979.18	ENST00000435036.6:ENST00000331320.12:ENST00000406191.5:ENST00000405646.5:ENST00000438610.5:ENST00000481012.5:ENST00000424723.5:ENST00000494026.1:ENST00000498644.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	83	2	1.72573	2.346985	2.96824	0.0196488	9.98194e-4	0.109608	0.0290732
chr1	21726865	21726963	396287	0	-	0.27551	[0,0.28]	chr1	47279	4	INTRON	INTRON	USP48	ENSG00000090686.16	ENST00000400301.5:ENST00000308271.14:ENST00000529637.5:ENST00000526044.5:ENST00000534705.5	protein_coding	protein_coding	protein_coding	protein_coding	22	409	2	2.02991	2.346945	2.66398	0.00368796	4.79695e-5	0.0535094	0.00566113
chr18	9182919	9183019	6869393	0	+	0.27	[0,0.28]	chr18	680567	4	SS5_PROX	SS5_PROX:INTRON	ANKRD12	ENSG00000101745.17	ENST00000585234.5:ENST00000262126.9:ENST00000540578.6:ENST00000581635.5:ENST00000400020.7:ENST00000581758.1:ENST00000546007.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	71	2	2.09841	2.346945	2.59548	0.0346067	0.0151026	0.136649	0.108435
chr6	13683700	13683800	3058944	0	-	0.28	[0,0.28]	chr6	284542	245	INTRON	INTRON	RANBP9	ENSG00000010017.13	ENST00000011619.6	protein_coding	protein_coding	protein_coding	protein_coding	4	71	2	2.09841	2.346945	2.59548	0.0346067	0.0151026	0.136649	0.108435
chr12	117042890	117042989	5425882	0	-	0.424242	(0.408,0.44]	chr12	518341	5	INTRON	INTRON	TESC	ENSG00000088992.18	ENST00000470612.5:ENST00000335209.12:ENST00000541210.5:ENST00000549210.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	41	2	1.85305	2.3469100000000003	2.84077	0.0543543	0.0132196	0.182243	0.0940535
chr18	803326	803426	6940617	0	-	0.42	(0.408,0.44]	chr18	686527	53	INTRON	INTRON	YES1	ENSG00000176105.14	ENST00000584307.5:ENST00000314574.5:ENST00000577611.1:ENST00000581960.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	41	2	1.85305	2.3469100000000003	2.84077	0.0543543	0.0132196	0.182243	0.0940535
chr10	3068833	3068921	4381536	0	+	0.636364	(0.57,1]	chr10	404041	5	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PFKP	ENSG00000067057.18	ENST00000607886.5:ENST00000381125.9:ENST00000495715.1:ENST00000381075.7:ENST00000678206.1:ENST00000677351.1:ENST00000678089.1:ENST00000676796.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	54	2	1.66359	2.34689	3.03019	0.0224545	1.05548e-4	0.124921	0.00920724
chr16	100609	100709	6425377	0	-	0.52	(0.515,0.57]	chr16	617340	1	SS3_PROX	SS3_PROX:INTRON	NPRL3	ENSG00000103148.17	ENST00000611875.5:ENST00000622194.4:ENST00000621703.4:ENST00000399953.7:ENST00000473674.5:ENST00000457916.5:ENST00000483663.5:ENST00000422814.5:ENST00000468260.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	35	2	1.9459	2.34681	2.74772	0.0429089	0.0142192	0.148082	0.103638
chr19	10118257	10118348	7134173	0	-	0.538462	(0.515,0.57]	chr19	719040	3	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	EIF3G	ENSG00000130811.12	ENST00000253108.9:ENST00000589454.5:ENST00000587146.5:ENST00000588709.5:ENST00000589009.5:ENST00000593066.5:ENST00000593095.5:ENST00000587993.5:ENST00000590940.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	35	2	1.9459	2.34681	2.74772	0.0429089	0.0142192	0.148082	0.103638
chr2	96352320	96352420	830376	0	+	0.53	(0.515,0.57]	chr2	92830	3	SS5_PROX	SS5_PROX:INTRON	NCAPH	ENSG00000121152.10	ENST00000240423.9:ENST00000427946.5:ENST00000435975.5:ENST00000477409.1:ENST00000456906.5:ENST00000455200.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	35	2	1.9459	2.34681	2.74772	0.0429089	0.0142192	0.148082	0.103638
chr5	70049866	70049966	2382406	0	+	0.56	(0.515,0.57]	chr5	229601	1	SS5_PROX	SS5_PROX:INTRON	SMN2	ENSG00000205571.14	ENST00000511812.5:ENST00000626847.2:ENST00000506734.5:ENST00000380742.8:ENST00000380743.9:ENST00000614240.4:ENST00000380741.8:ENST00000628696.2:ENST00000638794.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	35	2	1.9459	2.34681	2.74772	0.0429089	0.0142192	0.148082	0.103638
chrX	73959486	73959584	7682251	0	+	0.55102	(0.515,0.57]	chrX	786628	5	INTRON	INTRON	JPX	ENSG00000225470.8	ENST00000664637.1:ENST00000639185.1:ENST00000655090.1:ENST00000640437.1:ENST00000660546.1:ENST00000667886.1:ENST00000660840.1:ENST00000657179.1:ENST00000670506.1:ENST00000657910.1:ENST00000662120.1:ENST00000671207.1:ENST00000659254.1:ENST00000656624.1:ENST00000667573.1:ENST00000660856.1:ENST00000660836.1:ENST00000668590.1:ENST00000658649.1:ENST00000414209.6:ENST00000654137.1:ENST00000670994.1:ENST00000653479.1:ENST00000602772.5:ENST00000655879.1:ENST00000657372.1:ENST00000657096.1:ENST00000602985.6:ENST00000670685.1:ENST00000670503.1:ENST00000663027.1:ENST00000654995.1:ENST00000602895.6:ENST00000654374.1:ENST00000660087.1:ENST00000665032.1:ENST00000671336.1:ENST00000671476.1:ENST00000667057.1:ENST00000670192.1:ENST00000670464.1:ENST00000665345.1:ENST00000661546.1:ENST00000662543.1:ENST00000602938.6:ENST00000664295.1:ENST00000654005.1:ENST00000669149.1:ENST00000659852.1:ENST00000656509.1:ENST00000602294.6:ENST00000667294.1:ENST00000663470.1:ENST00000602920.6:ENST00000671021.1:ENST00000659849.1:ENST00000667937.1:ENST00000661130.1:ENST00000654196.1:ENST00000655994.1:ENST00000659373.1:ENST00000662239.1:ENST00000670805.1:ENST00000656263.1:ENST00000653069.1:ENST00000657638.1:ENST00000653808.1:ENST00000653929.1:ENST00000653885.1:ENST00000659023.1:ENST00000602546.5:ENST00000659622.1:ENST00000671518.1:ENST00000670408.1	lncRNA	lncRNA	lncRNA	lncRNA	3	35	2	1.9459	2.34681	2.74772	0.0429089	0.0142192	0.148082	0.103638
chr17	81919352	81919451	6850462	0	-	0.585859	(0.57,1]	chr17	678519	12	UTR3	UTR3:EXON_MRNA:INTRON	SIRT7:MAFG	ENSG00000187531.14:ENSG00000197063.11	ENST00000572902.5:ENST00000357736.9	protein_coding	protein_coding	protein_coding	protein_coding	5	30	2	1.79898	2.346805	2.89463	0.0206524	0.00788262	0.122348	0.076155
chr17	82546262	82546361	6692870	0	+	0.535354	(0.515,0.57]	chr17	654627	256	INTRON	INTRON	FOXK2	ENSG00000141568.21	ENST00000473637.6:ENST00000335255.10:ENST00000527313.6:ENST00000570585.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	108	2	2.29652	2.346805	2.39709	0.00157487	7.86638e-4	0.0361957	0.0258324
chr1	6216810	6216908	5261	0	+	0.540816	(0.515,0.57]	chr1	1005	33	INTRON	INTRON	RNF207	ENSG00000158286.13	ENST00000377939.5:ENST00000496676.5:ENST00000483336.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	42	2	1.56681	2.34672	3.12663	0.064862	0.00374498	0.179394	0.0562234
chr1	32392980	32393080	415181	0	-	0.5	(0.476,0.515]	chr1	50088	57	INTRON	INTRON	BSDC1	ENSG00000160058.19	ENST00000455895.7:ENST00000444377.5:ENST00000341071.11:ENST00000526031.5:ENST00000419121.6:ENST00000446293.6:ENST00000373520.8:ENST00000527513.5:ENST00000527163.5:ENST00000530485.1:ENST00000474414.5:ENST00000530876.5:ENST00000530753.1:ENST00000533084.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	74	2	1.99457	2.3467149999999997	2.69886	0.009924	0.00385209	0.0877296	0.0542786
chr13	32591290	32591390	5465356	0	+	0.5	(0.476,0.515]	chr13	523717	43	INTRON	INTRON	PDS5B	ENSG00000083642.19	ENST00000315596.15:ENST00000482955.5:ENST00000498550.5:ENST00000450460.5:ENST00000493653.1:ENST00000466078.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	40	2	2.13304	2.346685	2.56033	0.0287634	0.024866	0.132101	0.127066
chr14	55149833	55149926	5900073	0	-	0.483871	(0.476,0.515]	chr14	560387	8	INTRON	INTRON	DLGAP5	ENSG00000126787.13	ENST00000395425.6:ENST00000247191.7	protein_coding	protein_coding	protein_coding	protein_coding	3	40	2	2.13304	2.346685	2.56033	0.0287634	0.024866	0.132101	0.127066
chr3	15086036	15086112	1620229	0	-	0.368421	(0.35,0.378]	chr3	167528	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	RBSN	ENSG00000131381.12	ENST00000253699.7:ENST00000476527.6:ENST00000449964.6:ENST00000463214.5:ENST00000441057.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	87	2	1.91706	2.346655	2.77625	0.026412	7.04769e-4	0.122506	0.0241881
chr12	76066471	76066570	5370036	0	-	0.333333	(0.32,0.35]	chr12	512308	50	INTRON	INTRON	NAP1L1	ENSG00000187109.15	ENST00000618691.5:ENST00000552056.5:ENST00000393263.7:ENST00000431879.7:ENST00000552147.5:ENST00000547773.5:ENST00000544816.5:ENST00000542344.5:ENST00000535020.6:ENST00000549596.5:ENST00000552342.5:ENST00000547529.6:ENST00000548044.5:ENST00000550934.5:ENST00000551992.5:ENST00000548273.5:ENST00000551600.5:ENST00000547704.5:ENST00000551524.5:ENST00000549988.5:ENST00000547479.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	122	2	1.50711	2.34661	3.18611	0.0205297	6.68157e-4	0.122348	0.0235847
chr10	63504848	63504948	4635782	0	-	0.49	(0.476,0.515]	chr10	426242	390	INTRON	INTRON	JMJD1C	ENSG00000171988.20	ENST00000633035.1	protein_coding	processed_transcript	protein_coding	processed_transcript	4	50	2	2.20789	2.34658	2.48527	0.03496	0.00820497	0.13747500000000001	0.081115
chr9	130079129	130079229	4211210	0	+	0.49	(0.476,0.515]	chr9	386011	1	SS3_PROX	SS3_PROX:INTRON	GPR107	ENSG00000148358.20	ENST00000372406.5:ENST00000372410.7:ENST00000347136.11:ENST00000493417.5:ENST00000610997.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	50	2	2.20789	2.34658	2.48527	0.03496	0.00820497	0.13747500000000001	0.081115
chr9	97996568	97996667	4173172	0	+	0.434343	(0.408,0.44]	chr9	380275	14	INTRON	INTRON	ANP32B	ENSG00000136938.9	ENST00000339399.5:ENST00000473205.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	73	2	1.36246	2.346565	3.33067	0.0386802	0.0024459	0.159946	0.0445752
chr16	20774341	20774440	6317686	0	+	0.494949	(0.476,0.515]	chr16	604596	37	INTRON	INTRON	ACSM3	ENSG00000005187.12	ENST00000568235.5:ENST00000289416.10:ENST00000440284.6:ENST00000561795.5:ENST00000562251.5	protein_coding	protein_coding	protein_coding	protein_coding	4	50	2	1.88582	2.346555	2.80729	0.0273268	0.0126008	0.123904	0.0980703
chr15	59003101	59003201	6039036	0	+	0.45	(0.44,0.476]	chr15	574972	143	INTRON	INTRON	RNF111	ENSG00000157450.16	ENST00000559757.1:ENST00000348370.9:ENST00000559160.1:ENST00000559209.5:ENST00000557998.5	protein_coding	protein_coding	protein_coding	protein_coding	6	75	2	1.86959	2.34655	2.82351	0.0176166	0.00191049	0.105146	0.0403772
chr1	20785985	20786085	389856	0	-	0.48	(0.476,0.515]	chr1	46583	4	SS5_PROX	SS5_PROX:INTRON	HP1BP3	ENSG00000127483.19	ENST00000438032.6:ENST00000312239.10:ENST00000424732.5:ENST00000417710.5:ENST00000375000.5:ENST00000437575.5:ENST00000419490.5:ENST00000414993.1:ENST00000443615.1	protein_coding	protein_coding	protein_coding	protein_coding	3	40	2	1.99341	2.34654	2.69967	0.037389	0.0195838	0.155878	0.109483
chr20	63200004	63200103	7362618	0	-	0.515152	(0.476,0.515]	chr20	751224	29	INTRON	INTRON	YTHDF1	ENSG00000149658.18	ENST00000370339.8:ENST00000370334.4	protein_coding	protein_coding	protein_coding	protein_coding	3	40	2	1.99341	2.34654	2.69967	0.037389	0.0195838	0.155878	0.109483
chr22	21791880	21791979	7560625	0	-	0.444444	(0.44,0.476]	chr22	773370	27	INTRON	INTRON	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	25	296	2	2.05053	2.346425	2.64232	3.50928e-4	6.64002e-5	0.0167097	0.00717984
chr10	5448648	5448747	4384222	0	+	0.30303	(0.28,0.32]	chr10	404411	14	INTRON	INTRON	NET1	ENSG00000173848.19	ENST00000355029.9:ENST00000449083.5:ENST00000486354.1:ENST00000380359.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	131	2	2.1563	2.34639	2.53648	0.00925866	0.00174256	0.0817766	0.0386026
chr1	15908520	15908620	35273	0	+	0.54	(0.515,0.57]	chr1	4272	315	INTRON	INTRON	SPEN	ENSG00000065526.12	ENST00000673875.1:ENST00000375759.8:ENST00000438066.1:ENST00000442985.1	protein_coding	protein_coding	protein_coding	protein_coding	2	26	2	2.12971	2.346385	2.56306	0.0757903	0.0247751	0.194427	0.131869
chr1	246219624	246219724	677831	0	-	0.54	(0.515,0.57]	chr1	79733	260	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000453676.5:ENST00000462422.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	26	2	2.12971	2.346385	2.56306	0.0757903	0.0247751	0.194427	0.131869
chr14	105263536	105263636	5973978	0	-	0.56	(0.515,0.57]	chr14	568040	66	INTRON	INTRON	BRF1	ENSG00000185024.18	ENST00000547530.7:ENST00000379937.6:ENST00000619151.4:ENST00000327359.7:ENST00000440513.7:ENST00000546417.5:ENST00000550692.1:ENST00000548421.2	protein_coding	protein_coding	protein_coding	protein_coding	2	26	2	2.12971	2.346385	2.56306	0.0757903	0.0247751	0.194427	0.131869
chr15	41431449	41431549	6005505	0	+	0.55	(0.515,0.57]	chr15	571377	138	INTRON	INTRON	RTF1	ENSG00000137815.15	ENST00000558298.5:ENST00000389629.9:ENST00000462276.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	26	2	2.12971	2.346385	2.56306	0.0757903	0.0247751	0.194427	0.131869
chr16	2516752	2516848	6278687	0	+	0.53125	(0.515,0.57]	chr16	600552	2	EXON_MRNA	EXON_MRNA:INTRON	ATP6V0C:ENSG00000279520	ENSG00000185883.12:ENSG00000279520.1	ENST00000330398.9:ENST00000568562.1:ENST00000565223.1:ENST00000624099.1	protein_coding	protein_coding	protein_coding:TEC	protein_coding:TEC	2	26	2	2.12971	2.346385	2.56306	0.0757903	0.0247751	0.194427	0.131869
chr2	24811288	24811387	712270	0	+	0.525253	(0.515,0.57]	chr2	82368	111	INTRON	INTRON	CENPO	ENSG00000138092.11	ENST00000473706.5:ENST00000491031.5:ENST00000380834.7:ENST00000486527.6:ENST00000260662.2:ENST00000498362.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	26	2	2.12971	2.346385	2.56306	0.0757903	0.0247751	0.194427	0.131869
chr20	41579238	41579338	7344153	0	-	0.53	(0.515,0.57]	chr20	748566	147	INTRON	INTRON	CHD6	ENSG00000124177.16	ENST00000373233.8:ENST00000373222.3:ENST00000482596.1:ENST00000440647.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	26	2	2.12971	2.346385	2.56306	0.0757903	0.0247751	0.194427	0.131869
chr1	220010745	220010845	638821	0	-	0.42	(0.408,0.44]	chr1	75259	4	SS5_PROX	SS5_PROX:INTRON	EPRS1	ENSG00000136628.18	ENST00000366923.8:ENST00000609181.5:ENST00000477030.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	13	153	2	1.52804	2.34634	3.16464	0.0173777	2.26292e-5	0.104301	0.00371897
chr14	101777231	101777331	5818650	0	+	0.38	(0.378,0.408]	chr14	551819	103	INTRON	INTRON	PPP2R5C	ENSG00000078304.20	ENST00000694906.1:ENST00000422945.6:ENST00000554442.5:ENST00000556068.5:ENST00000328724.9:ENST00000554504.1:ENST00000553890.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	78	2	2.256	2.346285	2.43657	0.0106733	0.00336115	0.0861859	0.0532154
chr11	61817196	61817295	4797346	0	+	0.666667	(0.57,1]	chr11	444376	1	INTRON	INTRON	FADS2	ENSG00000134824.14	ENST00000574708.5:ENST00000257261.10:ENST00000522639.1:ENST00000522056.5:ENST00000517839.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	22	2	1.77365	2.34627	2.91889	0.0670385	0.00719009	0.183051	0.0756118
chr19	5944030	5944130	7125260	0	-	0.61	(0.57,1]	chr19	717357	18	INTRON	INTRON	RANBP3	ENSG00000031823.14	ENST00000340578.10:ENST00000439268.6:ENST00000592771.5:ENST00000591092.5:ENST00000034275.12:ENST00000587479.2:ENST00000592621.5:ENST00000590623.5:ENST00000591736.5:ENST00000590953.5:ENST00000588879.5:ENST00000587159.5:ENST00000586117.5:ENST00000589353.5:ENST00000587463.5:ENST00000588010.5:ENST00000591124.5:ENST00000585339.5:ENST00000592133.5:ENST00000591881.5:ENST00000589886.5:ENST00000587263.5:ENST00000587956.5:ENST00000591333.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	22	2	1.77365	2.34627	2.91889	0.0670385	0.00719009	0.183051	0.0756118
chr2	61516454	61516552	1131001	0	-	0.632653	(0.57,1]	chr2	121606	16	INTRON	INTRON	XPO1	ENSG00000082898.19	ENST00000676553.1:ENST00000677556.1:ENST00000677814.1:ENST00000676771.1:ENST00000677803.1:ENST00000677239.1:ENST00000678790.1:ENST00000677928.1:ENST00000678182.1:ENST00000677150.1:ENST00000678172.1:ENST00000678360.1:ENST00000678081.1:ENST00000676889.1:ENST00000676783.1:ENST00000679035.1:ENST00000677422.1:ENST00000677417.1:ENST00000677813.1:ENST00000676999.1:ENST00000676667.1:ENST00000678263.1:ENST00000678877.1:ENST00000677933.1:ENST00000680228.1:ENST00000677289.1:ENST00000677190.1:ENST00000401558.7:ENST00000428210.5:ENST00000677290.1:ENST00000677850.1:ENST00000451765.6:ENST00000676789.1:ENST00000678741.1:ENST00000404992.6:ENST00000406957.5:ENST00000443240.5:ENST00000476585.5:ENST00000468259.1:ENST00000420673.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	22	2	1.77365	2.34627	2.91889	0.0670385	0.00719009	0.183051	0.0756118
chr9	135946571	135946671	4372417	0	-	0.65	(0.57,1]	chr9	402534	2	SS3_PROX	SS3_PROX:INTRON	UBAC1	ENSG00000130560.9	ENST00000371756.4:ENST00000471163.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	22	2	1.77365	2.34627	2.91889	0.0670385	0.00719009	0.183051	0.0756118
chr2	96890737	96890837	1182132	0	-	0.47	(0.44,0.476]	chr2	126720	119	INTRON	INTRON	FAM178B	ENSG00000168754.15	ENST00000393526.6:ENST00000490605.3:ENST00000470789.5:ENST00000494172.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	69	2	1.28061	2.346185	3.41176	0.0639824	0.00130987	0.177882	0.0333932
chrX	124035062	124035160	7717493	0	+	0.377551	(0.35,0.378]	chrX	789506	36	INTRON	INTRON	STAG2	ENSG00000101972.20	ENST00000218089.13:ENST00000455404.5:ENST00000483575.5:ENST00000687810.1:ENST00000687071.1:ENST00000469481.1:ENST00000371160.5:ENST00000435103.5:ENST00000687852.1:ENST00000371145.8:ENST00000692982.1:ENST00000371157.7:ENST00000691035.1:ENST00000686802.1:ENST00000691383.1:ENST00000686127.1:ENST00000371144.7:ENST00000458176.5:ENST00000466748.5:ENST00000471107.1:ENST00000428941.5:ENST00000435215.5:ENST00000394478.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	45	2	2.24535	2.3461800000000004	2.44701	0.0647516	0.00900997	0.179192	0.0851009
chr5	109809674	109809774	2450222	0	+	0.41	(0.408,0.44]	chr5	234656	50	INTRON	INTRON	MAN2A1	ENSG00000112893.10	ENST00000261483.5:ENST00000502261.5:ENST00000508043.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	62	2	1.40381	2.346165	3.28852	0.0521927	0.00287185	0.177259	0.0474836
chr7	92070552	92070639	3352351	0	+	0.45977	(0.44,0.476]	chr7	312354	5	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	AKAP9	ENSG00000127914.19	ENST00000680534.1:ENST00000680513.1:ENST00000680072.1:ENST00000679821.1:ENST00000679554.1:ENST00000356239.8:ENST00000679521.1:ENST00000680181.1:ENST00000681722.1:ENST00000680766.1:ENST00000679448.1:ENST00000681412.1:ENST00000680047.1:ENST00000679474.1:ENST00000680952.1:ENST00000679457.1:ENST00000679722.1:ENST00000680074.1:ENST00000674381.2:ENST00000359028.7:ENST00000491695.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	58	2	2.08453	2.3461350000000003	2.60774	0.0255874	0.00689	0.120269	0.0750118
chr1	167698933	167699032	247653	0	+	0.545455	(0.515,0.57]	chr1	29471	7	INTRON	INTRON	RCSD1	ENSG00000198771.11	ENST00000537350.5:ENST00000367854.8	protein_coding	protein_coding	protein_coding	protein_coding	4	42	2	1.60221	2.346115	3.09002	0.0581855	0.00491099	0.188704	0.0609494
chr20	49279708	49279800	7284615	0	+	0.336957	(0.32,0.35]	chr20	741054	1	INTRON	INTRON	ZFAS1	ENSG00000177410.13	ENST00000371743.8:ENST00000417721.5:ENST00000441722.5:ENST00000450535.5:ENST00000458653.5:ENST00000428008.6:ENST00000620594.2:ENST00000652916.1:ENST00000326677.9:ENST00000623640.1	lncRNA	lncRNA	lncRNA	lncRNA	10	165	2	1.8807	2.3460650000000003	2.81143	0.0106415	2.33142e-4	0.0915714	0.013966
chr1	1574077	1574177	360315	0	-	0.52	(0.515,0.57]	chr1	41854	2	SS5_PROX	SS5_PROX:INTRON	SSU72	ENSG00000160075.12	ENST00000291386.4:ENST00000378725.3:ENST00000359060.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	26	2	2.34087	2.3460599999999996	2.35125	0.0469761	0.0436431	0.162255	0.151917
chr15	68170753	68170852	6057129	0	+	0.535354	(0.515,0.57]	chr15	576602	56	INTRON	INTRON	PIAS1	ENSG00000033800.14	ENST00000249636.11:ENST00000545237.1	protein_coding	protein_coding	protein_coding	protein_coding	2	26	2	2.34087	2.3460599999999996	2.35125	0.0469761	0.0436431	0.162255	0.151917
chr19	5641093	5641193	7005477	0	+	0.53	(0.515,0.57]	chr19	694958	1	SS3_PROX	SS3_PROX:INTRON	SAFB	ENSG00000160633.13	ENST00000589863.5:ENST00000588852.2:ENST00000591666.5:ENST00000292123.9:ENST00000592224.5:ENST00000586934.5:ENST00000454510.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	26	2	2.34087	2.3460599999999996	2.35125	0.0469761	0.0436431	0.162255	0.151917
chr3	136170019	136170119	1823976	0	-	0.52	(0.515,0.57]	chr3	183518	169	INTRON	INTRON	MSL2	ENSG00000174579.4	ENST00000309993.3:ENST00000434835.2:ENST00000481989.1:ENST00000491050.1:ENST00000473093.1	protein_coding	protein_coding	protein_coding	protein_coding	2	26	2	2.34087	2.3460599999999996	2.35125	0.0469761	0.0436431	0.162255	0.151917
chr4	82888504	82888603	2180083	0	-	0.535354	(0.515,0.57]	chr4	214408	62	INTRON	INTRON	SEC31A	ENSG00000138674.17	ENST00000395310.7:ENST00000513858.5:ENST00000348405.8:ENST00000448323.5:ENST00000311785.11:ENST00000509142.5:ENST00000443462.6:ENST00000355196.6:ENST00000508502.5:ENST00000505984.5:ENST00000508479.5:ENST00000436790.6:ENST00000503058.5:ENST00000507816.5:ENST00000514326.5:ENST00000513323.5:ENST00000511975.5:ENST00000507340.5:ENST00000507867.5:ENST00000506497.5:ENST00000510310.1:ENST00000503210.5:ENST00000505434.5:ENST00000507676.5:ENST00000506495.5:ENST00000507051.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	26	2	2.34087	2.3460599999999996	2.35125	0.0469761	0.0436431	0.162255	0.151917
chr7	67280925	67281024	3541645	0	-	0.565657	(0.515,0.57]	chr7	330372	62	INTRON	INTRON	PMS2P4	ENSG00000067601.9	ENST00000685171.1:ENST00000688358.1:ENST00000692496.1:ENST00000685583.1:ENST00000688710.1:ENST00000684859.1:ENST00000685318.1:ENST00000691713.1:ENST00000686389.1:ENST00000690253.1:ENST00000688815.1:ENST00000692171.1:ENST00000692360.1:ENST00000689281.1:ENST00000690241.1:ENST00000689629.1:ENST00000689043.1:ENST00000688809.1:ENST00000687432.1:ENST00000687680.1:ENST00000686900.1:ENST00000691782.1:ENST00000693356.1:ENST00000691384.1:ENST00000690440.1:ENST00000686719.1:ENST00000686561.1:ENST00000688238.1:ENST00000687826.1:ENST00000689908.1:ENST00000689385.1:ENST00000689855.1:ENST00000691806.1:ENST00000689028.1:ENST00000688599.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	2	26	2	2.34087	2.3460599999999996	2.35125	0.0469761	0.0436431	0.162255	0.151917
chr9	134435869	134435966	4220971	0	+	0.536082	(0.515,0.57]	chr9	387414	13	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000481739.2:ENST00000356384.4:ENST00000672570.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	26	2	2.34087	2.3460599999999996	2.35125	0.0469761	0.0436431	0.162255	0.151917
chr2	135540508	135540608	874043	0	+	0.4	(0.378,0.408]	chr2	97879	85	INTRON	INTRON	R3HDM1	ENSG00000048991.17	ENST00000483021.5:ENST00000463230.5:ENST00000683871.1:ENST00000409478.5:ENST00000264160.8:ENST00000438014.5:ENST00000488035.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	104	2	1.87402	2.34604	2.81806	0.0121355	5.36236e-4	0.0910127	0.0209287
chr9	4853739	4853839	4095487	0	+	0.3	(0.28,0.32]	chr9	373212	38	INTRON	INTRON	RCL1	ENSG00000120158.12	ENST00000381750.9:ENST00000442869.5:ENST00000381730.5:ENST00000381728.5:ENST00000448872.6	protein_coding	protein_coding	protein_coding	protein_coding	10	105	2	1.29164	2.346025	3.40041	0.0401321	0.00273088	0.161534	0.0467642
chr2	23988915	23989015	707573	0	+	0.35	(0.32,0.35]	chr2	81969	37	INTRON	INTRON	UBXN2A	ENSG00000173960.14	ENST00000446425.2:ENST00000404924.5:ENST00000309033.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	35	2	2.31405	2.3459950000000003	2.37794	0.0517107	0.0498601	0.176696	0.156383
chr20	49034696	49034796	7283764	0	+	0.33	(0.32,0.35]	chr20	740809	16	UTR3	UTR3:EXON_MRNA	ARFGEF2	ENSG00000124198.10	ENST00000371917.5:ENST00000681399.1:ENST00000679436.1:ENST00000679542.1:ENST00000681119.1:ENST00000679747.1:ENST00000680130.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	35	2	2.31405	2.3459950000000003	2.37794	0.0517107	0.0498601	0.176696	0.156383
chr7	64822247	64822346	3320628	0	+	0.333333	(0.32,0.35]	chr7	308722	62	INTRON	INTRON	ZNF138	ENSG00000197008.10	ENST00000359735.7:ENST00000440155.6:ENST00000494380.5:ENST00000307355.12:ENST00000437743.1:ENST00000440598.2:ENST00000430838.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	35	2	2.31405	2.3459950000000003	2.37794	0.0517107	0.0498601	0.176696	0.156383
chr4	88775504	88775603	2200135	0	-	0.474747	(0.44,0.476]	chr4	215930	71	INTRON	INTRON	FAM13A	ENSG00000138640.15	ENST00000395002.6:ENST00000264344.10:ENST00000503556.5:ENST00000511976.5:ENST00000508369.5:ENST00000513837.5:ENST00000504836.5:ENST00000507352.1:ENST00000502459.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	13	127	2	1.43971	2.345965	3.25222	0.0187246	2.39476e-4	0.108861	0.0136403
chr1	19347458	19347558	387517	0	-	0.61	(0.57,1]	chr1	46347	12	INTRON	INTRON	CAPZB	ENSG00000077549.19	ENST00000264202.8:ENST00000264203.7:ENST00000375142.5:ENST00000482808.2:ENST00000674449.1:ENST00000674390.1:ENST00000375144.6:ENST00000674432.1:ENST00000433834.5:ENST00000674228.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	22	2	2.02391	2.34596	2.66801	0.0339274	0.0169968	0.134508	0.110899
chr16	582052	582149	6272670	0	+	0.71134	(0.57,1]	chr16	598696	4	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	PIGQ	ENSG00000007541.17	ENST00000409527.6:ENST00000321878.10:ENST00000636657.1:ENST00000026218.9:ENST00000443147.5:ENST00000635909.1:ENST00000636005.1:ENST00000637468.1:ENST00000420990.6:ENST00000635205.1:ENST00000480424.6:ENST00000540241.1:ENST00000476438.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	22	2	2.02391	2.34596	2.66801	0.0339274	0.0169968	0.134508	0.110899
chr17	82908985	82909085	6695814	0	+	0.61	(0.57,1]	chr17	655016	10	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	TBCD	ENSG00000141556.22	ENST00000682479.1:ENST00000682722.1:ENST00000684464.1:ENST00000684544.1:ENST00000681983.1:ENST00000684361.1:ENST00000683184.1:ENST00000683282.1:ENST00000684408.1:ENST00000355528.9:ENST00000683444.1:ENST00000684776.1:ENST00000683041.1:ENST00000684760.1:ENST00000684349.1:ENST00000682213.1:ENST00000539345.6:ENST00000684000.1:ENST00000684188.1:ENST00000684429.1:ENST00000682610.1:ENST00000683821.1:ENST00000682654.1:ENST00000576160.6:ENST00000571712.5:ENST00000576996.5:ENST00000574801.5:ENST00000683584.1:ENST00000682099.1:ENST00000684559.1:ENST00000571316.5:ENST00000576760.5:ENST00000572984.5:ENST00000683839.1:ENST00000574975.5:ENST00000572953.5:ENST00000571796.5:ENST00000682315.1:ENST00000574422.1:ENST00000682225.1:ENST00000576677.6:ENST00000571618.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	22	2	2.02391	2.34596	2.66801	0.0339274	0.0169968	0.134508	0.110899
chr19	1223840	1223937	6994387	0	+	0.57732000000000006	(0.57,1]	chr19	692934	2	UTR3	UTR3:EXON_MRNA:INTRON	STK11	ENSG00000118046.17	ENST00000326873.12:ENST00000652231.1:ENST00000589152.5:ENST00000585465.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	22	2	2.02391	2.34596	2.66801	0.0339274	0.0169968	0.134508	0.110899
chr19	11090678	11090758	7016824	0	+	0.65	(0.57,1]	chr19	697419	2	CDS	CDS:EXON_MRNA:INTRON	LDLR	ENSG00000130164.14	ENST00000557933.5:ENST00000558518.6:ENST00000545707.5:ENST00000535915.5:ENST00000455727.6:ENST00000557958.1:ENST00000560502.5:ENST00000558013.5:ENST00000252444.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	22	2	2.02391	2.34596	2.66801	0.0339274	0.0169968	0.134508	0.110899
chr2	76021343	76021443	818373	0	+	0.58	(0.57,1]	chr2	91391	1485	INTRON	INTRON	ENSG00000287474	ENSG00000287474.1	ENST00000670606.1	lncRNA	lncRNA	lncRNA	lncRNA	3	22	2	2.02391	2.34596	2.66801	0.0339274	0.0169968	0.134508	0.110899
chr16	2753945	2754045	6279829	0	+	0.32	(0.28,0.32]	chr16	600759	3	SS5_PROX	SS5_PROX:INTRON	SRRM2	ENSG00000167978.17	ENST00000576924.5:ENST00000301740.13:ENST00000575009.5:ENST00000576894.5:ENST00000575701.4:ENST00000630499.2:ENST00000576415.5:ENST00000571378.5:ENST00000574340.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	85	2	2.17756	2.34591	2.51426	0.0130851	0.00781326	0.0934394	0.0788246
chr8	104565436	104565536	4014486	0	-	0.33	(0.32,0.35]	chr8	367439	331	INTRON	INTRON	LRP12	ENSG00000147650.12	ENST00000424843.6:ENST00000276654.10:ENST00000520770.1:ENST00000519675.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	65	2	1.84365	2.345885	2.84812	0.0184323	0.0147575	0.116493	0.0983813
chr7	119754668	119754768	3628885	0	-	0.32	(0.28,0.32]	chr7	337323	21	INTRON	INTRON	LINC02476	ENSG00000225546.6	ENST00000660268.1:ENST00000431071.5:ENST00000426413.2	lncRNA	lncRNA	lncRNA	lncRNA	6	78	2	1.49395	2.3458449999999997	3.19774	0.0423482	0.00548491	0.161744	0.0648867
chr7	148853404	148853504	3670454	0	-	0.44	(0.408,0.44]	chr7	340628	57	INTRON	INTRON	EZH2	ENSG00000106462.12	ENST00000683292.1:ENST00000320356.7:ENST00000492143.5:ENST00000478654.5:ENST00000350995.6:ENST00000460911.5:ENST00000683744.1:ENST00000682317.1:ENST00000682263.1:ENST00000684300.1:ENST00000476773.5:ENST00000483967.5:ENST00000498186.5:ENST00000483012.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	146	2	2.30509	2.34578	2.38647	0.00234575	3.92467e-4	0.0434875	0.0178532
chr7	100311021	100311121	3586518	0	-	0.51	(0.476,0.515]	chr7	334330	99	INTRON	INTRON	PMS2P1	ENSG00000078319.11	ENST00000685724.1:ENST00000692351.1:ENST00000685541.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	11	134	2	1.97067	2.345725	2.72078	0.00401605	3.2753e-4	0.0552299	0.0160995
chr14	49674827	49674927	5886372	0	-	0.38	(0.378,0.408]	chr14	558611	4	SS3_PROX	SS3_PROX:INTRON	POLE2	ENSG00000100479.13	ENST00000216367.10:ENST00000539565.6:ENST00000556584.5:ENST00000554396.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	43	2	2.05897	2.34572	2.63247	0.0339294	0.0215745	0.134508	0.123836
chr16	70412467	70412567	6511198	0	-	0.52	(0.515,0.57]	chr16	630689	110	INTRON	INTRON	ST3GAL2	ENSG00000157350.13	ENST00000342907.3:ENST00000566097.1:ENST00000561708.1:ENST00000567586.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	14	108	2	1.24548	2.3457	3.44592	0.0294148	8.97344e-5	0.142135	0.00844245
chr19	1272880	1272968	6994625	0	+	0.602273	(0.57,1]	chr19	693002	6	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	CIRBP	ENSG00000099622.14	ENST00000588030.5:ENST00000586472.5:ENST00000588090.5:ENST00000591935.5:ENST00000586548.5:ENST00000585913.5:ENST00000589710.5:ENST00000586773.5:ENST00000587896.6:ENST00000593093.5:ENST00000413636.6:ENST00000590347.5:ENST00000587169.5:ENST00000320936.9:ENST00000586636.5:ENST00000591376.5:ENST00000589235.5:ENST00000585914.5:ENST00000588344.2:ENST00000592234.5:ENST00000444172.6:ENST00000590188.5:ENST00000588917.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	70	439	2	2.2204	2.3456900000000003	2.47098	5.95428e-6	4.66828e-7	0.0017129	3.92744e-4
chr8	54061555	54061654	3953471	0	-	0.50505	(0.476,0.515]	chr8	362605	61	INTRON	INTRON	LYPLA1	ENSG00000120992.18	ENST00000316963.8:ENST00000618914.4:ENST00000618741.1:ENST00000343231.10:ENST00000519272.5:ENST00000518546.5:ENST00000522007.5:ENST00000519891.5:ENST00000521352.5:ENST00000521898.5:ENST00000519926.5:ENST00000517297.5:ENST00000520896.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	65	2	1.83961	2.3456900000000003	2.85177	0.0314489	0.00169916	0.13151	0.0381936
chr1	169477498	169477584	582585	0	-	0.430233	(0.408,0.44]	chr1	70213	5	CDS	CDS:EXON_MRNA:INTRON	SLC19A2	ENSG00000117479.15	ENST00000236137.10:ENST00000367804.4:ENST00000646596.1	protein_coding	protein_coding	protein_coding	protein_coding	7	92	2	1.69979	2.34563	2.99147	0.0310346	2.05062e-4	0.13151	0.0124557
chr19	3411478	3411578	7000076	0	+	0.52	(0.515,0.57]	chr19	694176	3	SS5_PROX	SS5_PROX:INTRON	NFIC	ENSG00000141905.19	ENST00000641145.1:ENST00000589123.5:ENST00000395111.7:ENST00000586919.5:ENST00000341919.7:ENST00000443272.3:ENST00000590282.5:ENST00000588839.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	85	2	1.89549	2.345605	2.79572	0.0094473	5.08572e-4	0.0817766	0.0202333
chr16	81528285	81528385	6405834	0	+	0.47	(0.44,0.476]	chr16	615031	324	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6	protein_coding	protein_coding	protein_coding	protein_coding	5	71	2	1.62896	2.34559	3.06222	0.0546679	8.483e-4	0.182674	0.0267232
chr1	25548267	25548367	48700	0	+	0.34	(0.32,0.35]	chr1	5985	41	INTRON	INTRON	LDLRAP1	ENSG00000157978.12	ENST00000374338.5	protein_coding	protein_coding	protein_coding	protein_coding	5	65	2	1.45026	2.345565	3.24087	0.0622478	0.00420518	0.194723	0.0572185
chr1	19597833	19597923	40400	0	+	0.477778	(0.476,0.515]	chr1	4739	1	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	MICOS10	ENSG00000173436.15	ENST00000648702.1:ENST00000617872.4:ENST00000322753.7:ENST00000486890.5:ENST00000498067.1:ENST00000462646.5:ENST00000467029.5:ENST00000481464.5:ENST00000498642.5:ENST00000479642.1:ENST00000485362.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	65	2	2.05714	2.3455500000000002	2.63396	0.0156961	0.00426634	0.101453	0.0596808
chr1	167731424	167731524	247859	0	+	0.48	(0.476,0.515]	chr1	29490	88	INTRON	INTRON	MPZL1	ENSG00000197965.12	ENST00000464954.1:ENST00000359523.7:ENST00000448405.5:ENST00000392121.7:ENST00000465787.5:ENST00000474859.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	65	2	2.05714	2.3455500000000002	2.63396	0.0156961	0.00426634	0.101453	0.0596808
chr3	100711268	100711368	1467952	0	+	0.51	(0.476,0.515]	chr3	153840	2	SS5_PROX	SS5_PROX:INTRON	TFG	ENSG00000114354.15	ENST00000675047.1:ENST00000490574.6:ENST00000675543.1:ENST00000676308.1:ENST00000675499.1:ENST00000674699.1:ENST00000418917.7:ENST00000675553.1:ENST00000620299.5:ENST00000675246.1:ENST00000675692.1:ENST00000676276.1:ENST00000676054.1:ENST00000675890.1:ENST00000675011.1:ENST00000675586.1:ENST00000674645.1:ENST00000675958.1:ENST00000674798.1:ENST00000676010.1:ENST00000675591.1:ENST00000479672.6:ENST00000675420.1:ENST00000674615.1:ENST00000676431.1:ENST00000674758.1:ENST00000240851.9:ENST00000675243.1:ENST00000676111.1:ENST00000476228.5:ENST00000463568.6:ENST00000676395.1:ENST00000487505.6:ENST00000615993.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	89	2	2.34237	2.3455199999999996	2.34867	0.00539703	0.00223831	0.0644048	0.0435144
chr12	110742152	110742252	5411527	0	-	0.5	(0.476,0.515]	chr12	516745	1	SS5_PROX	SS5_PROX:INTRON	PPP1CC	ENSG00000186298.12	ENST00000335007.10:ENST00000340766.9:ENST00000550991.5:ENST00000551676.5:ENST00000620030.1:ENST00000551690.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:processed_transcript	7	89	2	2.24654	2.345475	2.44441	0.0036718	0.00346427	0.0539802	0.0535094
chr3	196066000	196066100	1897383	0	-	0.33	(0.32,0.35]	chr3	189940	4	SS3_PROX	SS3_PROX:INTRON	TFRC	ENSG00000072274.13	ENST00000420415.5:ENST00000360110.9:ENST00000392396.7	protein_coding	protein_coding	protein_coding	protein_coding	12	108	2	1.27059	2.345425	3.42026	0.0333278	0.00219805	0.146554	0.0417893
chr15	27112692	27112792	5983570	0	+	0.42	(0.408,0.44]	chr15	569164	855	INTRON	INTRON	GABRG3	ENSG00000182256.13	ENST00000615808.5:ENST00000555083.5	protein_coding	protein_coding	protein_coding	protein_coding	7	91	2	2.12303	2.345395	2.56776	0.00586883	0.00227507	0.0690758	0.0426265
chr5	72220288	72220387	2639782	0	-	0.484848	(0.476,0.515]	chr5	250886	55	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MRPS27	ENSG00000113048.18	ENST00000694990.1:ENST00000694989.1:ENST00000522042.2:ENST00000694988.1:ENST00000261413.10:ENST00000513900.6:ENST00000695403.1:ENST00000523654.6:ENST00000694998.1:ENST00000694997.1:ENST00000695298.1:ENST00000694996.1:ENST00000694995.1:ENST00000519143.6:ENST00000694994.1:ENST00000695297.1:ENST00000695296.1:ENST00000694993.1:ENST00000694992.1:ENST00000694991.1:ENST00000694999.1:ENST00000457646.9:ENST00000515226.5:ENST00000695404.1:ENST00000519874.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	99	2	2.10459	2.34537	2.58615	0.00515536	0.00302726	0.0650394	0.0493883
chr13	20022305	20022404	5453072	0	+	0.424242	(0.408,0.44]	chr13	522478	23	INTRON	INTRON	ZMYM2	ENSG00000121741.17	ENST00000382874.6:ENST00000610343.5:ENST00000382871.3	protein_coding	protein_coding	protein_coding	protein_coding	6	81	2	1.83501	2.345365	2.85572	0.0323448	4.26582e-4	0.133003	0.0184578
chr1	21132304	21132404	393184	0	-	0.29	(0.28,0.32]	chr1	46836	193	INTRON	INTRON	EIF4G3	ENSG00000075151.24	ENST00000374935.7:ENST00000602326.6:ENST00000685872.1:ENST00000686579.1:ENST00000688741.1:ENST00000400422.6:ENST00000634879.2:ENST00000693470.1:ENST00000685814.1:ENST00000356916.7:ENST00000682284.1:ENST00000438975.5:ENST00000411888.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	38	2	2.29724	2.345355	2.39347	0.0554156	0.0504457	0.18407	0.156383
chr16	68323595	68323694	6372390	0	+	0.292929	(0.28,0.32]	chr16	612420	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS3_PROX:SS5_PROX:INTRON	PRMT7	ENSG00000132600.18	ENST00000686904.1:ENST00000562381.7:ENST00000689486.1:ENST00000693200.1:ENST00000685141.1:ENST00000562050.6:ENST00000565745.6:ENST00000685109.1:ENST00000689637.1:ENST00000692867.1:ENST00000693670.1:ENST00000692760.1:ENST00000687654.1:ENST00000441236.3:ENST00000675132.1:ENST00000688470.1:ENST00000691833.1:ENST00000690432.1:ENST00000691804.1:ENST00000691961.1:ENST00000690932.1:ENST00000692632.1:ENST00000687444.1:ENST00000692283.1:ENST00000569571.5:ENST00000692621.1:ENST00000566341.5:ENST00000686053.1:ENST00000692966.1:ENST00000691663.1:ENST00000564050.6:ENST00000449359.7:ENST00000569047.7:ENST00000693309.1:ENST00000690311.1:ENST00000565356.5:ENST00000564441.6:ENST00000563520.5:ENST00000687558.1:ENST00000339507.9:ENST00000688969.1:ENST00000568975.5:ENST00000563562.5:ENST00000561806.5:ENST00000562456.1:ENST00000565761.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	38	2	2.29724	2.345355	2.39347	0.0554156	0.0504457	0.18407	0.156383
chr17	66421411	66421511	6663486	0	+	0.31	(0.28,0.32]	chr17	650326	572	INTRON	INTRON	PRKCA	ENSG00000154229.12	ENST00000413366.8:ENST00000578063.5:ENST00000284384.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	38	2	2.29724	2.345355	2.39347	0.0554156	0.0504457	0.18407	0.156383
chr6	68825184	68825284	2888218	0	+	0.3	(0.28,0.32]	chr6	273730	1854	INTRON	INTRON	ADGRB3	ENSG00000135298.15	ENST00000370598.6:ENST00000684661.1:ENST00000546190.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	38	2	2.29724	2.345355	2.39347	0.0554156	0.0504457	0.18407	0.156383
chr21	6669728	6669826	7425874	0	-	0.357143	(0.35,0.378]	chr21	757513	11	INTRON	INTRON	ENSG00000280145	ENSG00000280145.3	ENST00000625185.3:ENST00000624846.3:ENST00000623313.1:ENST00000624965.1:ENST00000623324.1	lncRNA	lncRNA	lncRNA	lncRNA	5	74	2	2.29482	2.345325	2.39583	0.0107976	0.00743782	0.0920575	0.0746192
chr12	110307218	110307318	5226362	0	+	0.41	(0.408,0.44]	chr12	495250	101	INTRON	INTRON	ATP2A2	ENSG00000174437.18	ENST00000308664.10:ENST00000539276.7:ENST00000377685.9:ENST00000548169.2:ENST00000550248.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	84	2	2.11768	2.3453150000000003	2.57295	0.00640423	0.00352982	0.0694534	0.0546236
chr2	8984900	8985000	1063381	0	-	0.53	(0.515,0.57]	chr2	113387	101	INTRON	INTRON	MBOAT2	ENSG00000143797.12	ENST00000305997.8:ENST00000486484.5:ENST00000477073.5:ENST00000462696.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	42	2	1.49871	2.3452450000000002	3.19178	0.0770828	0.00289534	0.196285	0.0494641
chr14	101809872	101809942	5818982	0	+	0.428571	(0.408,0.44]	chr14	551837	2	UTR5	UTR5:EXON_MRNA:INTRON	PPP2R5C	ENSG00000078304.20	ENST00000694906.1:ENST00000422945.6:ENST00000554442.5:ENST00000556068.5:ENST00000328724.9:ENST00000554504.1:ENST00000553890.1:ENST00000350249.7:ENST00000557621.5:ENST00000556946.1:ENST00000556307.5:ENST00000553730.5:ENST00000557714.1:ENST00000334743.9:ENST00000445439.7:ENST00000557095.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	16	187	2	2.07696	2.345215	2.61347	6.63612e-4	4.30839e-4	0.0233423	0.0190771
chr19	5942833	5942933	7125248	0	-	0.53	(0.515,0.57]	chr19	717357	6	INTRON	INTRON	RANBP3	ENSG00000031823.14	ENST00000340578.10:ENST00000439268.6:ENST00000592771.5:ENST00000591092.5:ENST00000034275.12:ENST00000587479.2:ENST00000592621.5:ENST00000590623.5:ENST00000591736.5:ENST00000590953.5:ENST00000588879.5:ENST00000587159.5:ENST00000586117.5:ENST00000589353.5:ENST00000587463.5:ENST00000588010.5:ENST00000591124.5:ENST00000585339.5:ENST00000592133.5:ENST00000591881.5:ENST00000589886.5:ENST00000587263.5:ENST00000587956.5:ENST00000591333.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	42	2	1.63184	2.345115	3.05839	0.0545832	0.00485936	0.165292	0.0640618
chr7	883443	883542	3269178	0	+	0.383838	(0.378,0.408]	chr7	303674	48	INTRON	INTRON	SUN1:GET4	ENSG00000164828.18:ENSG00000239857.7	ENST00000457861.1:ENST00000265857.8:ENST00000412734.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	104	2	2.04909	2.3450949999999997	2.6411	0.0048937	0.00174684	0.0641889	0.0375932
chr7	155701298	155701394	3452468	0	+	0.395833	(0.378,0.408]	chr7	322677	4	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	RBM33	ENSG00000184863.11	ENST00000401878.8:ENST00000392759.7:ENST00000307403.6:ENST00000440108.5:ENST00000392761.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	94	2	1.88843	2.34499	2.80155	0.00664928	0.00278307	0.0738715	0.0469265
chr6	15418154	15418254	2824670	0	+	0.35	(0.32,0.35]	chr6	265204	74	INTRON	INTRON	JARID2	ENSG00000008083.14	ENST00000341776.7:ENST00000397311.4	protein_coding	protein_coding	protein_coding	protein_coding	6	93	2	2.3011	2.34496	2.38882	0.00617969	0.00566663	0.0713552	0.0653997
chr2	112658226	112658324	852191	0	+	0.44898	(0.44,0.476]	chr2	95593	6	INTRON	INTRON	SLC20A1	ENSG00000144136.11	ENST00000272542.8:ENST00000498224.5:ENST00000433924.5:ENST00000456264.5:ENST00000413135.1:ENST00000480984.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	75	2	2.25992	2.3449400000000002	2.42996	0.0104804	0.00324123	0.0855777	0.0524329
chr12	123207263	123207362	5443799	0	-	0.474747	(0.44,0.476]	chr12	520832	35	INTRON	INTRON	MPHOSPH9	ENSG00000051825.15	ENST00000606320.6:ENST00000541076.6:ENST00000545556.6:ENST00000302373.8:ENST00000539024.5:ENST00000539336.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	49	2	2.08211	2.344925	2.60774	0.0255874	0.0130715	0.120269	0.0996047
chr6	147217260	147217360	2988836	0	+	0.31	(0.28,0.32]	chr6	280001	108	INTRON	INTRON	STXBP5	ENSG00000164506.15	ENST00000321680.11:ENST00000367481.7:ENST00000546097.5:ENST00000367480.7	protein_coding	protein_coding	protein_coding	protein_coding	6	96	2	1.86825	2.34488	2.82151	0.017708	0.00341865	0.11319	0.0517761
chr7	105113531	105113630	3375665	0	+	0.282828	(0.28,0.32]	chr7	316031	3	UTR3	UTR3:EXON_MRNA	KMT2E	ENSG00000005483.22	ENST00000334884.9:ENST00000311117.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	153	2	1.95608	2.34488	2.73368	0.00845157	7.86049e-4	0.0828457	0.0258544
chr4	126621989	126622089	2236929	0	-	0.34	(0.32,0.35]	chr4	219023	1565	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	11	159	2	2.32879	2.34481	2.36083	0.00373122	5.29833e-4	0.0535844	0.0207315
chr6	124971161	124971254	2951559	0	+	0.225806	[0,0.28]	chr6	277669	3	SS3_PROX	SS3_PROX:INTRON	RNF217	ENSG00000146373.17	ENST00000521654.7:ENST00000560949.5:ENST00000519971.1:ENST00000519565.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	80	2	1.67675	2.34481	3.01287	0.0352695	0.0115634	0.150332	0.0889104
chr7	158640285	158640383	3688113	0	-	0.459184	(0.44,0.476]	chr7	342109	6	UTR3	UTR3:EXON_MRNA:INTRON	NCAPG2	ENSG00000146918.20	ENST00000356309.8:ENST00000432615.5:ENST00000409423.5:ENST00000441982.5:ENST00000467785.5:ENST00000409339.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	124	2	2.25507	2.344785	2.4345	0.00185115	0.00113263	0.0388609	0.0308498
chr1	15920469	15920569	35399	0	+	0.34	(0.32,0.35]	chr1	4301	2	SS3_PROX	SS3_PROX:INTRON	SPEN	ENSG00000065526.12	ENST00000673875.1:ENST00000375759.8:ENST00000442985.1	protein_coding	protein_coding	protein_coding	protein_coding	10	148	2	2.02531	2.3447750000000003	2.66424	0.00401813	8.80794e-4	0.0578189	0.0272334
chr5	137938845	137938943	2729834	0	-	0.357143	(0.35,0.378]	chr5	256881	10	UTR3	UTR3:EXON_MRNA	FAM13B	ENSG00000031003.11	ENST00000689681.1:ENST00000033079.7	protein_coding	protein_coding	protein_coding	protein_coding	5	71	2	2.24196	2.34473	2.4475	0.0106974	0.00744693	0.0862205	0.0772645
chr1	51730424	51730524	100532	0	+	0.42	(0.408,0.44]	chr1	13275	3	SS5_PROX	SS5_PROX:INTRON	OSBPL9	ENSG00000117859.19	ENST00000371714.5:ENST00000428468.6:ENST00000447887.5:ENST00000495776.5:ENST00000435274.6:ENST00000453295.5:ENST00000489990.5:ENST00000484890.5:ENST00000532975.5:ENST00000534040.5:ENST00000527631.5:ENST00000531828.5:ENST00000361556.9:ENST00000473207.6:ENST00000533884.5:ENST00000481937.5:ENST00000526917.5:ENST00000462759.5:ENST00000486942.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	85	2	1.82326	2.34469	2.86612	0.0141799	0.00157924	0.0959618	0.0366789
chr11	67180919	67181019	4813068	0	+	0.4	(0.378,0.408]	chr11	448125	2	SS3_PROX	SS3_PROX:INTRON	KDM2A	ENSG00000173120.15	ENST00000529006.7:ENST00000398645.6:ENST00000308783.9	protein_coding	protein_coding	protein_coding	protein_coding	3	43	2	2.2259	2.344675	2.46345	0.0662381	0.00827342	0.181924	0.0813266
chr2	224523428	224523527	1335716	0	-	0.383838	(0.378,0.408]	chr2	140141	83	INTRON	INTRON	CUL3	ENSG00000036257.14	ENST00000344951.8:ENST00000264414.9:ENST00000409096.5:ENST00000409777.5:ENST00000541548.5:ENST00000432260.2:ENST00000436172.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	43	2	2.2259	2.344675	2.46345	0.0662381	0.00827342	0.181924	0.0813266
chr21	44040220	44040320	7415313	0	+	0.39	(0.378,0.408]	chr21	755795	19	INTRON	INTRON	TRAPPC10	ENSG00000160218.13	ENST00000291574.9:ENST00000380221.7:ENST00000422875.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	43	2	2.2259	2.344675	2.46345	0.0662381	0.00827342	0.181924	0.0813266
chr19	23763634	23763733	7042435	0	+	0.535354	(0.515,0.57]	chr19	702194	1	INTRON	INTRON	RPSAP58	ENSG00000288920.1	ENST00000471224.5:ENST00000692590.1:ENST00000475499.2:ENST00000686829.1:ENST00000689525.1:ENST00000691397.1:ENST00000688405.1:ENST00000692739.1:ENST00000687994.1:ENST00000484897.4:ENST00000685013.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	55	2	1.56269	2.34466	3.12663	0.0319658	0.00374498	0.13174	0.0562234
chr10	68339855	68339955	4440845	0	+	0.33	(0.32,0.35]	chr10	409499	3	SS5_PROX	SS5_PROX:INTRON	HNRNPH3	ENSG00000096746.18	ENST00000469172.5:ENST00000265866.12:ENST00000480987.5:ENST00000354695.5:ENST00000481819.5:ENST00000491200.5:ENST00000490442.5:ENST00000478698.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	67	2	2.05666	2.34438	2.6321	0.0268	0.00840213	0.123349	0.0824581
chr2	55003489	55003589	1120934	0	-	0.33	(0.32,0.35]	chr2	120142	154	INTRON	INTRON	RTN4	ENSG00000115310.19	ENST00000394609.6:ENST00000404909.5:ENST00000394611.6:ENST00000317610.11:ENST00000357732.8:ENST00000337526.11:ENST00000357376.7:ENST00000405240.5:ENST00000438462.1	protein_coding	protein_coding	protein_coding	protein_coding	5	67	2	2.05666	2.34438	2.6321	0.0268	0.00840213	0.123349	0.0824581
chr1	91787224	91787324	503628	0	-	0.51	(0.476,0.515]	chr1	59622	6	INTRON	INTRON	TGFBR3	ENSG00000069702.11	ENST00000212355.9:ENST00000533089.5:ENST00000370399.6:ENST00000525962.5:ENST00000532540.5:ENST00000465892.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	30	2	2.28264	2.34436	2.40608	0.0534132	0.0425709	0.179876	0.148082
chr10	125125654	125125753	4713990	0	-	0.50505	(0.476,0.515]	chr10	434919	24	INTRON	INTRON	CTBP2	ENSG00000175029.17	ENST00000337195.9:ENST00000411419.6:ENST00000494626.6:ENST00000531469.5:ENST00000460976.5:ENST00000476817.1:ENST00000530884.1:ENST00000530930.1:ENST00000467395.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	30	2	2.28264	2.34436	2.40608	0.0534132	0.0425709	0.179876	0.148082
chr21	39389227	39389324	7410077	0	+	0.484536	(0.476,0.515]	chr21	755154	10	INTRON	INTRON	GET1	ENSG00000182093.16	ENST00000415847.3:ENST00000647678.1:ENST00000650376.1:ENST00000649170.1:ENST00000623703.3:ENST00000647911.1:ENST00000649100.1:ENST00000487869.1:ENST00000649224.1:ENST00000471468.1:ENST00000398753.5:ENST00000649822.1:ENST00000442773.1:ENST00000380713.7:ENST00000380708.5:ENST00000466787.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	30	2	2.28264	2.34436	2.40608	0.0534132	0.0425709	0.179876	0.148082
chr4	2495734	2495830	1912094	0	+	0.510417	(0.476,0.515]	chr4	191933	6	INTRON	INTRON	RNF4	ENSG00000063978.16	ENST00000503659.5:ENST00000504224.5:ENST00000541204.5:ENST00000502316.5:ENST00000509388.5:ENST00000507247.5:ENST00000314289.13:ENST00000511843.5:ENST00000509258.5:ENST00000513284.5:ENST00000507784.5:ENST00000513578.5:ENST00000511859.5:ENST00000511892.5:ENST00000513643.5:ENST00000503123.5:ENST00000509206.1:ENST00000506706.5:ENST00000511600.5:ENST00000513450.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	30	2	2.28264	2.34436	2.40608	0.0534132	0.0425709	0.179876	0.148082
chr6	42067332	42067430	2864843	0	+	0.5	(0.476,0.515]	chr6	270977	10	EXON_MRNA	EXON_MRNA:INTRON	TAF8	ENSG00000137413.17	ENST00000686935.1:ENST00000372982.8:ENST00000456846.6:ENST00000494547.5:ENST00000372977.8:ENST00000688562.1:ENST00000686229.1:ENST00000691805.1:ENST00000687601.1:ENST00000688007.1:ENST00000689833.1:ENST00000687266.1:ENST00000465926.5:ENST00000685500.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	30	2	2.28264	2.34436	2.40608	0.0534132	0.0425709	0.179876	0.148082
chr7	100126307	100126406	3585611	0	-	0.50505	(0.476,0.515]	chr7	334240	66	INTRON	INTRON	ENSG00000242798	ENSG00000242798.1	ENST00000494221.1	lncRNA	lncRNA	lncRNA	lncRNA	2	30	2	2.28264	2.34436	2.40608	0.0534132	0.0425709	0.179876	0.148082
chrX	295509	295609	7605412	0	+	0.5	(0.476,0.515]	chrX	779415	19	INTRON	INTRON	PLCXD1	ENSG00000182378.15	ENST00000399012.6:ENST00000381657.8	protein_coding	protein_coding	protein_coding	protein_coding	2	30	2	2.28264	2.34436	2.40608	0.0534132	0.0425709	0.179876	0.148082
chr19	5656541	5656640	7005647	0	+	0.464646	(0.44,0.476]	chr19	695012	17	INTRON	INTRON	SAFB	ENSG00000160633.13	ENST00000589863.5:ENST00000588852.2:ENST00000292123.9:ENST00000592224.5:ENST00000454510.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	90	2	1.83459	2.3443300000000002	2.85407	0.0198542	4.30929e-4	0.109608	0.018618
chr1	150386512	150386612	221920	0	+	0.44	(0.408,0.44]	chr1	25051	212	INTRON	INTRON	RPRD2	ENSG00000163125.16	ENST00000492220.1:ENST00000369068.5:ENST00000401000.8:ENST00000369067.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	49	2	2.03431	2.344255	2.6542	0.0227514	0.0154896	0.117618	0.108998
chr10	69141833	69141933	4444727	0	+	0.41	(0.408,0.44]	chr10	410023	84	INTRON	INTRON	VPS26A	ENSG00000122958.15	ENST00000373382.5:ENST00000395098.5:ENST00000489656.5:ENST00000263559.11:ENST00000497564.5:ENST00000490696.5:ENST00000467852.1:ENST00000489794.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	49	2	2.03431	2.344255	2.6542	0.0227514	0.0154896	0.117618	0.108998
chr3	196062158	196062235	1897338	0	-	0.441558	(0.44,0.476]	chr3	189920	2	SS5_PROX	SS5_PROX:INTRON	TFRC	ENSG00000072274.13	ENST00000420415.5:ENST00000360110.9:ENST00000392396.7:ENST00000475593.5:ENST00000465288.5:ENST00000477148.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	17	181	2	1.79689	2.344155	2.89142	0.00223849	1.92791e-4	0.0435144	0.0127226
chr19	897155	897249	7110766	0	-	0.574468	(0.57,1]	chr19	714137	8	UTR3	UTR3:EXON_MRNA	R3HDM4	ENSG00000198858.10	ENST00000589428.5:ENST00000361574.10:ENST00000587975.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	64	2	1.95367	2.34414	2.73461	0.00422673	2.02023e-4	0.0572185	0.0124395
chr3	183743293	183743393	1580751	0	+	0.29	(0.28,0.32]	chr3	163062	61	INTRON	INTRON	YEATS2	ENSG00000163872.16	ENST00000305135.10	protein_coding	protein_coding	protein_coding	protein_coding	8	132	2	2.01853	2.344135	2.66974	0.0131536	6.07032e-4	0.0938857	0.0223951
chr2	87488517	87488616	826258	0	+	0.383838	(0.378,0.408]	chr2	92436	5	INTRON	INTRON	CYTOR:ENSG00000284879	ENSG00000222041.12:ENSG00000284879.1	ENST00000642796.1:ENST00000643589.1:ENST00000642451.1:ENST00000646386.1:ENST00000644478.1:ENST00000409139.6:ENST00000331944.10:ENST00000644125.1:ENST00000643743.1:ENST00000644577.1:ENST00000643276.1:ENST00000409898.2:ENST00000419680.6:ENST00000644976.1:ENST00000643070.1:ENST00000646855.1:ENST00000414584.1:ENST00000455131.5:ENST00000646636.1:ENST00000642293.1:ENST00000423846.5:ENST00000644040.1:ENST00000645138.1:ENST00000437561.2:ENST00000629257.1:ENST00000645729.1	lncRNA	lncRNA	lncRNA	lncRNA	8	97	2	1.42205	2.34412	3.26619	0.0390695	3.62021e-4	0.161228	0.0176126
chr7	127670646	127670746	3402576	0	+	0.29	(0.28,0.32]	chr7	318063	178	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000463020.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	62	2	1.56134	2.34407	3.1268	0.0740624	0.00508956	0.191153	0.0646039
chr4	98896653	98896751	2208194	0	-	0.377551	(0.35,0.378]	chr4	216170	7	INTRON	INTRON	EIF4E	ENSG00000151247.13	ENST00000450253.7:ENST00000280892.10:ENST00000515638.5:ENST00000504432.5:ENST00000511644.5:ENST00000505992.1:ENST00000507665.5:ENST00000504472.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	69	2	1.85092	2.344005	2.83709	0.01435	0.0114682	0.0966737	0.0956037
chr7	6033327	6033427	3475976	0	-	0.32	(0.28,0.32]	chr7	325180	39	INTRON	INTRON	EIF2AK1	ENSG00000086232.13	ENST00000199389.11	protein_coding	protein_coding	protein_coding	protein_coding	5	70	2	1.60333	2.343975	3.08462	0.0413158	0.0078976	0.161534	0.076155
chr15	85022522	85022622	6089337	0	+	0.44	(0.408,0.44]	chr15	579504	398	INTRON	INTRON	PDE8A	ENSG00000073417.15	ENST00000310298.8:ENST00000557957.5:ENST00000394553.6:ENST00000339708.9:ENST00000478717.5:ENST00000485596.5:ENST00000559742.5:ENST00000559086.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	41	2	1.94273	2.3439550000000002	2.74518	0.0456237	0.0152229	0.149888	0.108535
chr2	144448569	144448668	1241082	0	-	0.424242	(0.408,0.44]	chr2	131703	177	INTRON	INTRON	ZEB2	ENSG00000169554.23	ENST00000636471.1:ENST00000627532.3:ENST00000638128.1:ENST00000637304.1:ENST00000636179.1:ENST00000636820.1:ENST00000637045.1:ENST00000419938.5:ENST00000409487.7:ENST00000440875.6:ENST00000636732.2:ENST00000636026.2:ENST00000675069.1:ENST00000689298.1:ENST00000539609.7:ENST00000558170.6:ENST00000303660.8:ENST00000427902.5:ENST00000637267.2:ENST00000392861.6:ENST00000431672.4:ENST00000409211.5:ENST00000465308.5:ENST00000434448.5:ENST00000472146.5:ENST00000461784.3:ENST00000476394.5:ENST00000637591.2:ENST00000479735.1:ENST00000453352.5:ENST00000435831.5:ENST00000444559.5:ENST00000630572.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	41	2	1.94273	2.3439550000000002	2.74518	0.0456237	0.0152229	0.149888	0.108535
chr20	35855672	35855772	7263730	0	+	0.43	(0.408,0.44]	chr20	738108	1	SS5_PROX	SS5_PROX:INTRON	PHF20	ENSG00000025293.17	ENST00000461122.5:ENST00000374012.8:ENST00000374000.8:ENST00000339089.10:ENST00000481202.5:ENST00000449988.1:ENST00000486408.5:ENST00000495338.5:ENST00000496305.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	41	2	1.94273	2.3439550000000002	2.74518	0.0456237	0.0152229	0.149888	0.108535
chr7	129472507	129472606	3411955	0	+	0.414141	(0.408,0.44]	chr7	318984	14	INTRON	INTRON	STRIP2	ENSG00000128578.10	ENST00000249344.7:ENST00000435494.2	protein_coding	protein_coding	protein_coding	protein_coding	3	41	2	1.94273	2.3439550000000002	2.74518	0.0456237	0.0152229	0.149888	0.108535
chr9	37349752	37349852	4119965	0	+	0.44	(0.408,0.44]	chr9	375434	3	SS5_PROX	SS5_PROX:INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000461038.5:ENST00000488607.5:ENST00000463625.6:ENST00000497924.5:ENST00000481507.5:ENST00000496099.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	41	2	1.94273	2.3439550000000002	2.74518	0.0456237	0.0152229	0.149888	0.108535
chrX	16168095	16168180	7768246	0	-	0.576471	(0.57,1]	chrX	793930	4	INTRON	INTRON	ENSG00000238178	ENSG00000238178.7	ENST00000435789.1	lncRNA	lncRNA	lncRNA	lncRNA	7	48	2	2.24434	2.34395	2.44356	0.00677343	0.00109465	0.074225	0.0304174
chr9	120783106	120783206	4335361	0	-	0.24	[0,0.28]	chr9	398253	42	INTRON	INTRON	FBXW2	ENSG00000119402.18	ENST00000684405.1:ENST00000684001.1:ENST00000684047.1:ENST00000608872.6:ENST00000453291.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	58	2	2.24546	2.34394	2.44242	0.0491024	0.0206502	0.155269	0.122348
chr1	235267848	235267947	663259	0	-	0.383838	(0.378,0.408]	chr1	78552	67	INTRON	INTRON	ARID4B	ENSG00000054267.22	ENST00000349213.7:ENST00000366603.6:ENST00000264183.9:ENST00000421364.5:ENST00000491632.5:ENST00000418304.1:ENST00000466653.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	60	2	2.0848	2.34388	2.60296	0.0267851	0.00697927	0.123349	0.0754576
chr9	130756454	130756554	4214289	0	+	0.37	(0.35,0.378]	chr9	386427	416	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000393293.4	protein_coding	protein_coding	protein_coding	protein_coding	20	268	2	2.02967	2.343865	2.65806	0.00140078	5.38311e-5	0.0340865	0.00600644
chrX	103680137	103680235	7856514	0	-	0.428571	(0.408,0.44]	chrX	801086	11	INTRON	INTRON	MORF4L2	ENSG00000123562.18	ENST00000360458.5:ENST00000441076.7:ENST00000433176.6:ENST00000451301.5:ENST00000434230.5:ENST00000418819.5:ENST00000442614.5:ENST00000492116.5:ENST00000422355.5:ENST00000474653.5:ENST00000498064.1:ENST00000467755.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	164	2	2.18175	2.343805	2.50586	0.00158235	2.85208e-4	0.0362856	0.0150568
chr16	24542583	24542682	6327685	0	+	0.464646	(0.44,0.476]	chr16	605824	14	INTRON	INTRON	RBBP6	ENSG00000122257.20	ENST00000564314.5:ENST00000567686.5:ENST00000568015.5:ENST00000319715.10:ENST00000452655.6:ENST00000381039.7:ENST00000646282.1:ENST00000348022.6	protein_coding	protein_coding	protein_coding	protein_coding	9	114	2	2.22991	2.3438	2.45769	0.00208483	0.00166589	0.0424672	0.0369207
chr2	74875330	74875425	815182	0	+	0.494737	(0.476,0.515]	chr2	91229	5	INTRON	INTRON	HK2	ENSG00000159399.10	ENST00000290573.7:ENST00000409174.1	protein_coding	protein_coding	protein_coding	protein_coding	5	55	2	1.68907	2.343795	2.99852	0.0296007	0.0077575	0.142135	0.0757402
chr9	128326400	128326497	4204080	0	+	0.494845	(0.476,0.515]	chr9	384234	1	INTRON	INTRON	COQ4	ENSG00000167113.11	ENST00000300452.8	protein_coding	protein_coding	protein_coding	protein_coding	8	99	2	1.87544	2.34379	2.81214	0.0113658	5.41922e-4	0.0886611	0.0211086
chr5	32168550	32168650	2597458	0	-	0.43	(0.408,0.44]	chr5	246744	243	INTRON	INTRON	GOLPH3	ENSG00000113384.14	ENST00000265070.7:ENST00000503610.5:ENST00000512668.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	14	169	2	2.14138	2.343765	2.54615	7.37116e-4	6.07458e-4	0.0247924	0.0226131
chr2	167861414	167861514	1258414	0	-	0.48	(0.476,0.515]	chr2	133322	458	INTRON	INTRON	B3GALT1-AS1	ENSG00000235335.3	ENST00000430546.2:ENST00000657553.1:ENST00000670221.1:ENST00000436982.2	lncRNA	lncRNA	lncRNA	lncRNA	7	83	2	1.75694	2.3437	2.93046	0.0175942	0.00118985	0.105143	0.031662
chr1	77617750	77617850	492808	0	-	0.46	(0.44,0.476]	chr1	58292	327	INTRON	INTRON	ZZZ3	ENSG00000036549.13	ENST00000370801.8:ENST00000481346.5:ENST00000476275.5:ENST00000370798.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	110	2	1.62516	2.34369	3.06222	0.0097091	8.483e-4	0.0875962	0.0267232
chr16	10402588	10402688	6286443	0	+	0.41	(0.408,0.44]	chr16	601961	97	INTRON	INTRON	ATF7IP2	ENSG00000166669.14	ENST00000564797.5:ENST00000396559.5:ENST00000396560.6:ENST00000562527.5:ENST00000561932.5:ENST00000543967.5:ENST00000562102.6:ENST00000535850.5:ENST00000569900.5:ENST00000569939.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	77	2	2.03896	2.343625	2.64829	0.00968464	0.00400062	0.0828348	0.057767
chr20	41580637	41580737	7344167	0	-	0.27	[0,0.28]	chr20	748566	161	INTRON	INTRON	CHD6	ENSG00000124177.16	ENST00000373233.8:ENST00000373222.3:ENST00000482596.1:ENST00000440647.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	89	2	1.50357	2.343575	3.18358	0.0436989	0.00694532	0.162255	0.0718189
chr7	128993037	128993127	3635955	0	-	0.222222	[0,0.28]	chr7	338094	6	INTRON	INTRON	TNPO3	ENSG00000064419.14	ENST00000627585.2:ENST00000265388.10:ENST00000471234.5:ENST00000482320.5:ENST00000471166.1	protein_coding	protein_coding	protein_coding	protein_coding	5	80	2	1.71089	2.343525	2.97616	0.0318277	0.0128425	0.14477	0.0926667
chr6	111266546	111266641	2939851	0	+	0.442105	(0.44,0.476]	chr6	276921	7	CDS	CDS:UTR3:EXON_MRNA	MFSD4B	ENSG00000173214.7	ENST00000672303.1:ENST00000671876.2:ENST00000672750.1:ENST00000672191.1:ENST00000368847.5:ENST00000672554.1:ENST00000673024.1:ENST00000671883.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	54	2	2.24189	2.343515	2.44514	0.0193405	0.0087381	0.108861	0.0845538
chr1	23977849	23977910	402143	0	-	0.196721	[0,0.28]	chr1	48292	2	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SRSF10	ENSG00000188529.15	ENST00000492112.3:ENST00000344989.10:ENST00000341154.10:ENST00000453840.7:ENST00000484146.6:ENST00000473858.5:ENST00000374452.9:ENST00000374453.7:ENST00000343255.9:ENST00000338597.9:ENST00000495785.1:ENST00000497214.1:ENST00000485292.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	116	2	2.34112	2.34349	2.34586	0.0089545	0.00631808	0.0800073	0.0722266
chr3	179196993	179197090	1566288	0	+	0.391753	(0.378,0.408]	chr3	161905	11	EXON_MRNA	EXON_MRNA:INTRON	PIK3CA	ENSG00000121879.6	ENST00000477735.1:ENST00000263967.4:ENST00000643187.1:ENST00000675786.1:ENST00000468036.1:ENST00000675467.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	42	2	1.76032	2.3434850000000003	2.92665	0.0721577	0.0086017	0.187433	0.083729
chr4	78785707	78785807	1981478	0	+	0.38	(0.378,0.408]	chr4	198463	86	INTRON	INTRON	BMP2K	ENSG00000138756.19	ENST00000389010.7:ENST00000502613.3:ENST00000502871.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	42	2	1.76032	2.3434850000000003	2.92665	0.0721577	0.0086017	0.187433	0.083729
chr7	111177017	111177117	3620252	0	-	0.25	[0,0.28]	chr7	337093	2131	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	110	2	1.87045	2.343435	2.81642	0.0191786	0.00431467	0.119771	0.0578825
chr15	57024171	57024271	6033168	0	+	0.35	(0.32,0.35]	chr15	574669	224	INTRON	INTRON	TCF12	ENSG00000140262.18	ENST00000438423.6:ENST00000267811.9:ENST00000333725.10:ENST00000560190.5:ENST00000559609.5:ENST00000558908.5:ENST00000557843.5:ENST00000557947.5:ENST00000561152.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	76	2	2.22655	2.34341	2.46027	0.0108973	0.00823133	0.0873034	0.0812969
chr19	28474576	28474675	7165840	0	-	0.525253	(0.515,0.57]	chr19	724189	63	INTRON	INTRON	ENSG00000283403:ENSG00000267243	ENSG00000283403.1:ENSG00000267243.6	ENST00000592347.5:ENST00000593065.5	lncRNA	lncRNA	lncRNA	lncRNA	5	56	2	2.11384	2.34341	2.57298	0.0118599	0.00506495	0.0899583	0.0646039
chr5	28836140	28836240	2330111	0	+	0.33	(0.32,0.35]	chr5	225135	256	INTRON	INTRON	LINC02109	ENSG00000259786.7	ENST00000658190.1	lncRNA	lncRNA	lncRNA	lncRNA	5	76	2	2.22655	2.34341	2.46027	0.0108973	0.00823133	0.0873034	0.0812969
chr7	119892203	119892303	3630263	0	-	0.23	[0,0.28]	chr7	337335	910	INTRON	INTRON	LINC02476	ENSG00000225546.6	ENST00000660268.1:ENST00000431071.5:ENST00000426413.2	lncRNA	lncRNA	lncRNA	lncRNA	6	115	2	2.20536	2.3433900000000003	2.48142	0.0138742	0.00375221	0.0954405	0.0562562
chr3	52482113	52482213	1428541	0	+	0.5	(0.476,0.515]	chr3	150891	3	INTRON	INTRON	NISCH	ENSG00000010322.16	ENST00000479054.5:ENST00000345716.9:ENST00000489895.5:ENST00000485765.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	16	202	2	2.18612	2.34339	2.50066	7.82083e-4	1.97635e-4	0.0257355	0.0128965
chr14	33925204	33925302	5860741	0	-	0.397959	(0.378,0.408]	chr14	556991	11	UTR3	UTR3:EXON_MRNA	EGLN3	ENSG00000129521.15	ENST00000250457.9	protein_coding	protein_coding	protein_coding	protein_coding	3	42	2	2.29798	2.343355	2.38873	0.0458857	0.0147606	0.149888	0.106702
chr3	197621021	197621112	1903967	0	-	0.406593	(0.378,0.408]	chr3	190742	8	INTRON	INTRON	SDHAP4	ENSG00000214135.9	ENST00000685600.1:ENST00000688268.1:ENST00000689716.1:ENST00000689038.1:ENST00000414207.5:ENST00000686003.1:ENST00000418868.6:ENST00000685331.1:ENST00000690701.1:ENST00000685536.1:ENST00000449003.6:ENST00000440535.5:ENST00000454517.1:ENST00000437008.5	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript:transcribed_unprocessed_pseudogene	3	42	2	2.29798	2.343355	2.38873	0.0458857	0.0147606	0.149888	0.106702
chr7	102950033	102950133	3591130	0	-	0.4	(0.378,0.408]	chr7	335206	164	INTRON	INTRON	FBXL13	ENSG00000161040.18	ENST00000694871.1:ENST00000694870.1:ENST00000448002.6:ENST00000379305.7:ENST00000440067.3:ENST00000456695.6:ENST00000313221.8:ENST00000436908.5:ENST00000455112.7:ENST00000477915.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	42	2	2.29798	2.343355	2.38873	0.0458857	0.0147606	0.149888	0.106702
chr1	36042086	36042182	72277	0	+	0.489583	(0.476,0.515]	chr1	9234	13	INTRON	INTRON	AGO3	ENSG00000126070.20	ENST00000634486.1:ENST00000373191.9:ENST00000246314.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	48	2	1.74317	2.3433349999999997	2.9435	0.0396373	0.00929849	0.161534	0.0817766
chr11	34092356	34092456	4768074	0	+	0.51	(0.476,0.515]	chr11	441021	3	SS5_PROX	SS5_PROX:INTRON	CAPRIN1	ENSG00000135387.21	ENST00000341394.9:ENST00000528856.5:ENST00000389645.7:ENST00000532820.5:ENST00000530820.5:ENST00000529307.1:ENST00000533657.5:ENST00000528948.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	115	2	2.31359	2.34327	2.37295	0.00193884	0.00177302	0.0409025	0.0378427
chr11	77814001	77814101	4995911	0	-	0.5	(0.476,0.515]	chr11	472051	3	SS3_PROX	SS3_PROX:INTRON	RSF1	ENSG00000048649.14	ENST00000308488.11:ENST00000528095.5:ENST00000440064.2:ENST00000467567.1:ENST00000530604.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	99	2	1.81741	2.343245	2.86908	0.0141271	4.03011e-4	0.0959618	0.0180338
chr10	28547652	28547751	4413950	0	+	0.292929	(0.28,0.32]	chr10	407148	92	INTRON	INTRON	WAC	ENSG00000095787.24	ENST00000680735.1:ENST00000375664.8:ENST00000428935.6:ENST00000651598.1:ENST00000628285.3:ENST00000681112.1:ENST00000679570.1:ENST00000375646.5:ENST00000354911.9:ENST00000347934.8:ENST00000420266.6:ENST00000651885.1:ENST00000651441.1:ENST00000679398.1:ENST00000424454.5:ENST00000442148.6:ENST00000448193.5:ENST00000414108.6:ENST00000679428.1:ENST00000439676.5:ENST00000345541.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	88	2	1.91611	2.34324	2.7703700000000002	0.0539102	8.96564e-4	0.164153	0.0273866
chr17	49033764	49033863	6624973	0	+	0.373737	(0.35,0.378]	chr17	646620	14	INTRON	INTRON	IGF2BP1	ENSG00000159217.10	ENST00000290341.8:ENST00000431824.2:ENST00000515586.5:ENST00000499130.6:ENST00000505562.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	44	2	1.90405	2.343085	2.78212	0.0482651	0.0168532	0.171852	0.103549
chr1	243250002	243250102	668666	0	-	0.47	(0.44,0.476]	chr1	79325	243	INTRON	INTRON	CEP170	ENSG00000143702.16	ENST00000366544.5:ENST00000366543.5:ENST00000366542.6:ENST00000522191.5:ENST00000523424.5:ENST00000522522.5:ENST00000522995.1:ENST00000523581.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	56	2	1.42812	2.343065	3.25801	0.0673866	0.00248185	0.183355	0.0460771
chr6	147341675	147341774	2990101	0	+	0.444444	(0.44,0.476]	chr6	280116	19	INTRON	INTRON	STXBP5	ENSG00000164506.15	ENST00000321680.11:ENST00000367481.7:ENST00000367480.7:ENST00000367475.6:ENST00000392291.2	protein_coding	protein_coding	protein_coding	protein_coding	23	286	2	2.22643	2.343025	2.45962	2.2146e-4	1.19624e-4	0.0130616	0.00989746
chrX	136872943	136873043	7897604	0	-	0.4	(0.378,0.408]	chrX	804148	7	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	RBMX	ENSG00000147274.14	ENST00000561733.5:ENST00000431446.7:ENST00000496459.2:ENST00000568578.5:ENST00000419968.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	14	179	2	2.08684	2.3430150000000003	2.59919	0.00130534	6.41208e-4	0.0331539	0.0228915
chr15	63750586	63750684	6200060	0	-	0.387755	(0.378,0.408]	chr15	591393	4	INTRON	INTRON	HERC1	ENSG00000103657.14	ENST00000443617.7:ENST00000561400.1	protein_coding	protein_coding	protein_coding	protein_coding	7	93	2	2.33619	2.34297	2.34975	0.00607113	0.0021928	0.0676501	0.0435144
chr2	161403850	161403949	902076	0	+	0.323232	(0.32,0.35]	chr2	99743	83	INTRON	INTRON	PSMD14	ENSG00000115233.12	ENST00000409682.8:ENST00000477232.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	78	2	2.09005	2.3429349999999998	2.59582	0.0330483	0.00178944	0.133816	0.0392749
chr10	101797437	101797536	4680758	0	-	0.444444	(0.44,0.476]	chr10	431971	5	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	OGA	ENSG00000198408.14	ENST00000439817.5:ENST00000361464.8:ENST00000357797.9:ENST00000482611.5:ENST00000479811.5:ENST00000370094.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	23	251	2	1.92372	2.342915	2.76211	6.76249e-4	1.06535e-4	0.0236287	0.00924854
chr6	167924504	167924604	3035341	0	+	0.38	(0.378,0.408]	chr6	282833	1	SS3_PROX	SS3_PROX:INTRON	AFDN	ENSG00000130396.21	ENST00000683244.1:ENST00000351017.9:ENST00000344191.8:ENST00000392112.5:ENST00000392108.7:ENST00000400822.7:ENST00000447894.6:ENST00000366809.6:ENST00000366806.6:ENST00000511637.5:ENST00000485634.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	65	2	1.78414	2.34288	2.90162	0.0144669	0.0113157	0.105142	0.0886121
chr11	68120389	68120489	4972587	0	-	0.4	(0.378,0.408]	chr11	469440	2	SS5_PROX	SS5_PROX:INTRON	CHKA	ENSG00000110721.12	ENST00000265689.9:ENST00000356135.9:ENST00000531341.1	protein_coding	protein_coding	protein_coding	protein_coding	3	42	2	1.89621	2.342835	2.78946	0.0488044	0.0158859	0.173377	0.101453
chr1	40730166	40730266	82750	0	+	0.38	(0.378,0.408]	chr1	10736	60	INTRON	INTRON	NFYC	ENSG00000066136.21	ENST00000467203.5:ENST00000424419.6:ENST00000427410.6:ENST00000447388.8:ENST00000425457.6:ENST00000453631.5:ENST00000456393.6:ENST00000372654.5:ENST00000534399.5:ENST00000372653.5:ENST00000372669.8:ENST00000372652.5:ENST00000372651.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	31	2	2.13703	2.34276	2.54849	0.0797592	0.0273196	0.19979	0.136494
chr1	50958171	50958271	452235	0	-	0.38	(0.378,0.408]	chr1	54267	998	INTRON	INTRON	FAF1	ENSG00000185104.21	ENST00000396153.7:ENST00000487898.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	31	2	2.13703	2.34276	2.54849	0.0797592	0.0273196	0.19979	0.136494
chr12	42235049	42235147	5313582	0	-	0.387755	(0.378,0.408]	chr12	505341	40	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	YAF2	ENSG00000015153.15	ENST00000534854.7:ENST00000327791.8:ENST00000380790.4:ENST00000552109.5:ENST00000547622.5:ENST00000547351.5:ENST00000551268.5:ENST00000548661.5:ENST00000546726.5:ENST00000547724.1:ENST00000552928.5:ENST00000548917.1:ENST00000547254.5:ENST00000555248.2:ENST00000541702.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	31	2	2.13703	2.34276	2.54849	0.0797592	0.0273196	0.19979	0.136494
chr14	45180383	45180470	5715337	0	+	0.390805	(0.378,0.408]	chr14	542625	4	SS3_PROX	SS3_PROX:INTRON	FANCM	ENSG00000187790.12	ENST00000267430.10:ENST00000556250.6:ENST00000696647.1:ENST00000542564.6:ENST00000696675.1:ENST00000696642.1:ENST00000696649.1:ENST00000696648.1:ENST00000696650.1:ENST00000696683.1:ENST00000696684.1:ENST00000696685.1:ENST00000696664.1:ENST00000696663.1:ENST00000554809.6:ENST00000696659.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	31	2	2.13703	2.34276	2.54849	0.0797592	0.0273196	0.19979	0.136494
chr16	57779160	57779260	6493744	0	-	0.38	(0.378,0.408]	chr16	628202	4	SS5_PROX	SS5_PROX:INTRON	KIFC3	ENSG00000140859.16	ENST00000379655.8:ENST00000445690.7:ENST00000465878.6:ENST00000421376.6:ENST00000541240.5:ENST00000543930.5:ENST00000562903.5:ENST00000564136.5:ENST00000565481.5:ENST00000562503.5:ENST00000562311.5:ENST00000569112.5:ENST00000562984.5:ENST00000567204.5:ENST00000566648.5:ENST00000561524.5:ENST00000569619.5:ENST00000565351.5:ENST00000566975.5:ENST00000565684.5:ENST00000567479.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	31	2	2.13703	2.34276	2.54849	0.0797592	0.0273196	0.19979	0.136494
chr19	53080475	53080574	7210333	0	-	0.40404	(0.378,0.408]	chr19	731876	27	INTRON	INTRON	ZNF160	ENSG00000170949.18	ENST00000599056.5:ENST00000418871.5:ENST00000429604.5:ENST00000683776.1:ENST00000599247.5:ENST00000601982.5:ENST00000355147.9:ENST00000599729.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	31	2	2.13703	2.34276	2.54849	0.0797592	0.0273196	0.19979	0.136494
chr22	38498986	38499073	7588018	0	-	0.402299	(0.378,0.408]	chr22	776759	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DDX17	ENSG00000100201.23	ENST00000403230.3:ENST00000396821.8:ENST00000216019.11:ENST00000432525.5:ENST00000467279.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	31	2	2.13703	2.34276	2.54849	0.0797592	0.0273196	0.19979	0.136494
chr4	55634302	55634400	2150680	0	-	0.408163	(0.378,0.408]	chr4	211642	35	INTRON	INTRON	NMU	ENSG00000109255.11	ENST00000511469.5:ENST00000264218.7:ENST00000505262.5:ENST00000507338.1:ENST00000515325.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	31	2	2.13703	2.34276	2.54849	0.0797592	0.0273196	0.19979	0.136494
chr5	141561892	141561991	2739588	0	-	0.383838	(0.378,0.408]	chr5	258073	13	INTRON	INTRON	DIAPH1	ENSG00000131504.18	ENST00000647433.1:ENST00000389054.8:ENST00000518047.5	protein_coding	protein_coding	protein_coding	protein_coding	2	31	2	2.13703	2.34276	2.54849	0.0797592	0.0273196	0.19979	0.136494
chr6	42056897	42056995	2864734	0	+	0.387755	(0.378,0.408]	chr6	270964	10	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	TAF8	ENSG00000137413.17	ENST00000372978.7:ENST00000686935.1:ENST00000372982.8:ENST00000456846.6:ENST00000494547.5:ENST00000372977.8:ENST00000688562.1:ENST00000686229.1:ENST00000691805.1:ENST00000687601.1:ENST00000688007.1:ENST00000689833.1:ENST00000482926.1:ENST00000687266.1:ENST00000465926.5:ENST00000684962.1:ENST00000685500.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	31	2	2.13703	2.34276	2.54849	0.0797592	0.0273196	0.19979	0.136494
chr15	63557426	63557515	6042446	0	+	0.494382	(0.476,0.515]	chr15	575418	3	INTRON	INTRON	USP3	ENSG00000140455.17	ENST00000540797.5:ENST00000380324.8:ENST00000560070.5:ENST00000557884.5:ENST00000558157.5:ENST00000561326.5:ENST00000559873.5:ENST00000559192.5:ENST00000268049.11:ENST00000558285.5:ENST00000559257.5:ENST00000538686.6:ENST00000559711.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	54	2	2.05154	2.34275	2.63396	0.0336015	0.00426634	0.134145	0.0596808
chr2	86482892	86482992	823368	0	+	0.48	(0.476,0.515]	chr2	91992	3	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	KDM3A	ENSG00000115548.17	ENST00000409556.5:ENST00000312912.10:ENST00000441719.5:ENST00000409064.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	54	2	2.05154	2.34275	2.63396	0.0336015	0.00426634	0.134145	0.0596808
chr11	86018713	86018812	5014332	0	-	0.484848	(0.476,0.515]	chr11	472995	34	INTRON	INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000630913.2:ENST00000528398.5:ENST00000356360.9:ENST00000534412.5:ENST00000531771.5:ENST00000531558.1:ENST00000531930.5:ENST00000532041.5:ENST00000525162.5:ENST00000528256.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	74	2	2.14389	2.34273	2.54157	0.00697457	0.00540862	0.0718189	0.066545000000000007
chr4	78790998	78791098	1981531	0	+	0.25	[0,0.28]	chr4	198463	139	INTRON	INTRON	BMP2K	ENSG00000138756.19	ENST00000389010.7:ENST00000502613.3:ENST00000502871.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	185	2	2.0217	2.342675	2.66365	0.00798679	8.03523e-4	0.0766575	0.0258804
chr1	70216532	70216631	142538	0	+	0.464646	(0.44,0.476]	chr1	15965	104	INTRON	INTRON	SRSF11	ENSG00000116754.14	ENST00000370951.5:ENST00000463877.1:ENST00000687381.1:ENST00000370950.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	40	2	2.0776	2.34267	2.60774	0.0292951	0.0255874	0.141862	0.120269
chr1	229554376	229554475	653730	0	-	0.444444	(0.44,0.476]	chr1	77488	46	INTRON	INTRON	ABCB10	ENSG00000135776.5	ENST00000344517.5	protein_coding	protein_coding	protein_coding	protein_coding	3	40	2	2.0776	2.34267	2.60774	0.0292951	0.0255874	0.141862	0.120269
chr2	235528838	235528938	1041685	0	+	0.46	(0.44,0.476]	chr2	111222	39	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1:ENST00000402604.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	40	2	2.0776	2.34267	2.60774	0.0292951	0.0255874	0.141862	0.120269
chr6	3004651	3004751	2787898	0	+	0.45	(0.44,0.476]	chr6	263234	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	NQO2	ENSG00000124588.22	ENST00000426637.5:ENST00000380472.7:ENST00000380455.11:ENST00000397717.7:ENST00000338130.7:ENST00000380441.5:ENST00000380454.8:ENST00000380430.6:ENST00000606474.1	protein_coding	protein_coding	protein_coding	protein_coding	3	40	2	2.0776	2.34267	2.60774	0.0292951	0.0255874	0.141862	0.120269
chr18	73250695	73250795	6988481	0	-	0.25	[0,0.28]	chr18	691706	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	LINC02864	ENSG00000263711.6	ENST00000584544.5:ENST00000581011.5:ENST00000581862.6:ENST00000669547.1:ENST00000661525.1:ENST00000583405.5:ENST00000582571.2	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	9	143	2	1.80256	2.3426299999999998	2.8827	0.00972348	0.00341901	0.0876983	0.0517761
chr5	179827895	179827994	2561728	0	+	0.59596	(0.57,1]	chr5	245049	23	INTRON	INTRON	SQSTM1	ENSG00000161011.20	ENST00000389805.9:ENST00000510187.5:ENST00000360718.5:ENST00000466342.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	26	2	1.79063	2.3426299999999998	2.89463	0.0356001	0.00788262	0.15159	0.076155
chr1	212867778	212867877	309935	0	+	0.40404	(0.378,0.408]	chr1	35794	29	INTRON	INTRON	FLVCR1	ENSG00000162769.13	ENST00000366971.9:ENST00000419102.1:ENST00000579295.1:ENST00000474693.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	109	2	1.11352	2.342625	3.57173	0.079548	4.19615e-5	0.19979	0.00524985
chr1	35338263	35338362	68985	0	+	0.40404	(0.378,0.408]	chr1	8729	125	INTRON	INTRON	ZMYM4	ENSG00000146463.12	ENST00000314607.11:ENST00000441447.1	protein_coding	protein_coding	protein_coding	protein_coding	2	31	2	2.2259	2.34261	2.45932	0.0662381	0.0346754	0.181924	0.148144
chr1	148935867	148935965	215116	0	+	0.387755	(0.378,0.408]	chr1	23799	17	INTRON	INTRON	PDE4DIP	ENSG00000178104.20	ENST00000695768.1:ENST00000695767.1:ENST00000695794.1:ENST00000524974.5:ENST00000585156.5:ENST00000618462.4:ENST00000695795.1:ENST00000617031.4:ENST00000617527.4:ENST00000617454.4:ENST00000621371.4:ENST00000534536.5:ENST00000369356.8:ENST00000533845.1:ENST00000369354.7:ENST00000369349.7:ENST00000369351.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	31	2	2.2259	2.34261	2.45932	0.0662381	0.0346754	0.181924	0.148144
chr11	19235751	19235847	4933978	0	-	0.395833	(0.378,0.408]	chr11	462169	3	INTRON	INTRON	E2F8	ENSG00000129173.13	ENST00000527884.5:ENST00000250024.9:ENST00000620009.4	protein_coding	protein_coding	protein_coding	protein_coding	2	31	2	2.2259	2.34261	2.45932	0.0662381	0.0346754	0.181924	0.148144
chr2	182975697	182975796	1285387	0	-	0.40404	(0.378,0.408]	chr2	135354	80	INTRON	INTRON	NCKAP1	ENSG00000061676.15	ENST00000361354.9:ENST00000360982.2	protein_coding	protein_coding	protein_coding	protein_coding	2	31	2	2.2259	2.34261	2.45932	0.0662381	0.0346754	0.181924	0.148144
chr20	38137414	38137513	7341452	0	-	0.393939	(0.378,0.408]	chr20	748218	38	INTRON	INTRON	TGM2	ENSG00000198959.12	ENST00000361475.7	protein_coding	protein_coding	protein_coding	protein_coding	2	31	2	2.2259	2.34261	2.45932	0.0662381	0.0346754	0.181924	0.148144
chr3	171340837	171340937	1866253	0	-	0.39	(0.378,0.408]	chr3	186980	1123	INTRON	INTRON	TNIK	ENSG00000154310.17	ENST00000436636.7:ENST00000341852.10:ENST00000284483.12:ENST00000475336.5:ENST00000357327.9:ENST00000460047.5:ENST00000488470.5:ENST00000470834.5	protein_coding	protein_coding	protein_coding	protein_coding	2	31	2	2.2259	2.34261	2.45932	0.0662381	0.0346754	0.181924	0.148144
chr2	148700631	148700731	892314	0	+	0.36	(0.35,0.378]	chr2	98796	79	INTRON	INTRON	EPC2	ENSG00000135999.12	ENST00000457184.5:ENST00000258484.11:ENST00000397424.2	protein_coding	protein_coding	protein_coding	protein_coding	3	44	2	1.75561	2.342565	2.92952	0.0739399	0.00881187	0.190914	0.084878
chr8	225911	226010	3883287	0	-	0.464646	(0.44,0.476]	chr8	357290	61	INTRON	INTRON	RPL23AP53	ENSG00000223508.5	ENST00000606975.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	5	65	2	1.90381	2.34255	2.78129	0.0260626	0.00229634	0.122153	0.0439319
chr1	6196751	6196851	366171	0	-	0.38	(0.378,0.408]	chr1	43024	33	INTRON	INTRON	RPL22	ENSG00000116251.11	ENST00000234875.9:ENST00000480661.1:ENST00000497965.5:ENST00000471204.5:ENST00000465387.5:ENST00000462296.5:ENST00000465335.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	79	2	1.76	2.342545	2.92509	0.023484	0.00167715	0.128531	0.0370386
chr6	160027614	160027714	3023557	0	+	0.49	(0.476,0.515]	chr6	282042	3	SS5_PROX	SS5_PROX:INTRON	IGF2R	ENSG00000197081.16	ENST00000676781.1:ENST00000677704.1:ENST00000356956.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	54	2	2.32001	2.342505	2.365	0.0136217	0.0128901	0.101682	0.0926667
chr13	28201543	28201643	5461463	0	+	0.41	(0.408,0.44]	chr13	523261	38	INTRON	INTRON	PAN3	ENSG00000152520.14	ENST00000503791.5:ENST00000380958.8:ENST00000399613.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	83	2	1.8937	2.34247	2.79124	0.00928733	0.00276922	0.0855292	0.0469265
chr2	135087055	135087155	873017	0	+	0.35	(0.32,0.35]	chr2	97740	244	INTRON	INTRON	RAB3GAP1	ENSG00000115839.19	ENST00000539493.3:ENST00000688088.1:ENST00000693554.1:ENST00000690785.1:ENST00000689880.1:ENST00000264158.13:ENST00000690208.1:ENST00000691478.1:ENST00000686114.1:ENST00000685967.1:ENST00000442034.5:ENST00000687199.1:ENST00000691339.1:ENST00000688182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	48	2	2.23182	2.34244	2.45306	0.068598	0.00916394	0.184298	0.0855292
chr7	138468200	138468299	3434720	0	+	0.323232	(0.32,0.35]	chr7	319959	65	INTRON	INTRON	TRIM24	ENSG00000122779.18	ENST00000343526.9:ENST00000415680.6:ENST00000497516.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	48	2	2.23182	2.34244	2.45306	0.068598	0.00916394	0.184298	0.0855292
chr17	1391734	1391834	6699524	0	-	0.5	(0.476,0.515]	chr17	655552	216	INTRON	INTRON	YWHAE	ENSG00000108953.17	ENST00000264335.13:ENST00000571732.5:ENST00000573026.1:ENST00000573196.5:ENST00000575977.1:ENST00000469398.5:ENST00000486241.1:ENST00000489287.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	57	2	1.67283	2.3424	3.01197	0.0332283	0.00633162	0.134145	0.0722266
chr12	111595549	111595649	5413195	0	-	0.5	(0.476,0.515]	chr12	516941	308	INTRON	INTRON	ATXN2	ENSG00000204842.18	ENST00000642389.2:ENST00000608853.5:ENST00000672613.1:ENST00000673436.1:ENST00000643669.2:ENST00000616825.4:ENST00000389153.10:ENST00000550104.5:ENST00000483311.6:ENST00000672335.1:ENST00000673557.1:ENST00000673283.1:ENST00000673449.1:ENST00000535949.5:ENST00000542287.6:ENST00000644883.1:ENST00000647305.1:ENST00000671792.1:ENST00000392645.6:ENST00000672105.1:ENST00000549455.1:ENST00000548492.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	21	255	2	1.96668	2.342395	2.71811	0.00147763	2.05072e-5	0.0348908	0.00352107
chr21	22256908	22257008	7384937	0	+	0.4	(0.378,0.408]	chr21	752727	437	INTRON	INTRON	ENSG00000226043	ENSG00000226043.2	ENST00000667099.1:ENST00000654607.1:ENST00000444130.1	lncRNA	lncRNA	lncRNA	lncRNA	7	93	2	2.30499	2.34234	2.37969	0.00683258	0.00190547	0.0713163	0.0403738
chr12	106967182	106967280	5218624	0	+	0.204082	[0,0.28]	chr12	493949	1	SSB_ADJ	SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TMEM263	ENSG00000151135.10	ENST00000548125.5:ENST00000547242.5:ENST00000551489.5:ENST00000550344.5:ENST00000280756.9:ENST00000547081.1:ENST00000551813.1	protein_coding	protein_coding	protein_coding	protein_coding	8	152	2	2.30938	2.3422549999999998	2.37513	0.00572322	0.00288663	0.0657377	0.0494641
chr1	44776406	44776489	92631	0	+	0.445783	(0.44,0.476]	chr1	12359	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPS8	ENSG00000142937.12	ENST00000497035.5:ENST00000396651.8:ENST00000372209.3:ENST00000470475.1:ENST00000485390.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	22	253	2	1.90363	2.34224	2.78085	0.001332	5.37416e-5	0.0334536	0.00600135
chr19	28492752	28492852	7166022	0	-	0.51	(0.476,0.515]	chr19	724189	245	INTRON	INTRON	ENSG00000283403:ENSG00000267243	ENSG00000283403.1:ENSG00000267243.6	ENST00000592347.5:ENST00000593065.5	lncRNA	lncRNA	lncRNA	lncRNA	7	82	2	1.9127	2.342105	2.77151	0.00864134	0.00288481	0.0840615	0.0475859
chr2	108546265	108546365	845964	0	+	0.42	(0.408,0.44]	chr2	94661	113	INTRON	INTRON	LIMS1	ENSG00000169756.17	ENST00000695516.1:ENST00000544547.6:ENST00000695517.1	protein_coding	protein_coding	protein_coding	protein_coding	13	160	2	2.07066	2.342065	2.61347	0.00143638	4.30839e-4	0.0347139	0.0190771
chr10	124783454	124783554	4712463	0	-	0.38	(0.378,0.408]	chr10	434817	83	INTRON	INTRON	EEF1AKMT2	ENSG00000203791.15	ENST00000652548.1:ENST00000466270.5:ENST00000368836.7:ENST00000464099.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	50	2	1.8374	2.342015	2.84663	0.0299228	0.0133954	0.142135	0.0946278
chr14	31025403	31025503	5857864	0	-	0.59	(0.57,1]	chr14	556513	1	SS5_PROX	SS5_PROX:INTRON	STRN3	ENSG00000196792.12	ENST00000355683.9:ENST00000357479.10:ENST00000555358.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	54	2	1.57957	2.3419999999999996	3.10443	0.0132222	3.67483e-4	0.0999551	0.017788000000000002
chr2	151450515	151450613	893631	0	+	0.306122	(0.28,0.32]	chr2	98976	36	INTRON	INTRON	RIF1	ENSG00000080345.18	ENST00000453091.6:ENST00000428287.6:ENST00000444746.7:ENST00000243326.9:ENST00000414861.6:ENST00000430328.6	protein_coding	protein_coding	protein_coding	protein_coding	24	377	2	2.21051	2.341985	2.47346	3.32118e-4	3.0879e-4	0.0169016	0.0157445
chr8	26325827	26325927	3716440	0	+	0.46	(0.44,0.476]	chr8	345375	4	SS5_PROX	SS5_PROX:INTRON	PPP2R2A	ENSG00000221914.11	ENST00000380737.8:ENST00000520329.5:ENST00000518254.5:ENST00000524169.5:ENST00000518397.5:ENST00000522535.5:ENST00000665949.1:ENST00000522150.5:ENST00000523473.5:ENST00000521095.5:ENST00000660435.1:ENST00000523925.5:ENST00000524099.5:ENST00000315985.7:ENST00000519636.5:ENST00000522482.5:ENST00000521557.5:ENST00000519439.5:ENST00000521484.5:ENST00000523964.5:ENST00000667651.1:ENST00000657943.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	15	171	2	2.15874	2.34191	2.52508	0.00121905	4.11943e-4	0.0319984	0.0181365
chr21	39304664	39304764	7465453	0	-	0.36	(0.35,0.378]	chr21	760568	57	INTRON	INTRON	BRWD1	ENSG00000185658.14	ENST00000333229.6:ENST00000342449.8:ENST00000380800.7:ENST00000341322.4:ENST00000470108.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	109	2	2.30106	2.341895	2.38273	0.00534773	0.0015939	0.0642565	0.0367961
chr1	50582317	50582417	448462	0	-	0.39	(0.378,0.408]	chr1	54196	3	SS5_PROX	SS5_PROX:INTRON	FAF1	ENSG00000185104.21	ENST00000396153.7:ENST00000494400.5:ENST00000472808.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	42	2	1.8252	2.34187	2.85854	0.0619563	0.0107837	0.174514	0.0920575
chr19	5970185	5970284	7125530	0	-	0.383838	(0.378,0.408]	chr19	717384	39	INTRON	INTRON	RANBP3	ENSG00000031823.14	ENST00000340578.10:ENST00000439268.6:ENST00000592771.5:ENST00000591092.5:ENST00000034275.12:ENST00000587479.2:ENST00000592621.5:ENST00000590623.5:ENST00000591736.5:ENST00000590953.5:ENST00000588879.5:ENST00000587159.5:ENST00000586117.5:ENST00000589353.5:ENST00000587463.5:ENST00000588010.5:ENST00000591124.5:ENST00000585339.5:ENST00000592133.5:ENST00000591881.5:ENST00000589886.5:ENST00000587263.5:ENST00000587956.5:ENST00000591333.5:ENST00000592266.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	42	2	1.8252	2.34187	2.85854	0.0619563	0.0107837	0.174514	0.0920575
chr2	229824600	229824700	1340678	0	-	0.39	(0.378,0.408]	chr2	140409	57	INTRON	INTRON	TRIP12	ENSG00000153827.14	ENST00000675453.1:ENST00000675903.1:ENST00000283943.9:ENST00000675423.1:ENST00000389044.8:ENST00000389045.7:ENST00000479037.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	42	2	1.8252	2.34187	2.85854	0.0619563	0.0107837	0.174514	0.0920575
chr7	105351757	105351857	3603534	0	-	0.38	(0.378,0.408]	chr7	336161	448	INTRON	INTRON	SRPK2	ENSG00000135250.17	ENST00000393651.8:ENST00000482897.5:ENST00000460391.5:ENST00000462282.5:ENST00000465112.5:ENST00000482862.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	42	2	1.8252	2.34187	2.85854	0.0619563	0.0107837	0.174514	0.0920575
chr1	52848368	52848468	104962	0	+	0.35	(0.32,0.35]	chr1	13720	50	INTRON	INTRON	ZYG11A	ENSG00000203995.10	ENST00000371532.5:ENST00000612017.4:ENST00000371528.2	protein_coding	protein_coding	protein_coding	protein_coding	3	48	2	2.04237	2.34183	2.64129	0.0375542	0.0222819	0.140222	0.124303
chr19	48383112	48383202	7198949	0	-	0.6	(0.57,1]	chr19	729758	7	UTR3	UTR3:EXON_MRNA	KDELR1	ENSG00000105438.9	ENST00000330720.7:ENST00000597017.5	protein_coding	protein_coding	protein_coding	protein_coding	21	125	2	1.81879	2.341785	2.86478	0.00110025	6.76246e-6	0.03038	0.00195034
chr20	47328958	47329058	7349234	0	-	0.52	(0.515,0.57]	chr20	749346	100	INTRON	INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000435836.5:ENST00000446894.5:ENST00000441977.1	protein_coding	protein_coding	protein_coding	protein_coding	6	67	2	2.06758	2.341695	2.61581	0.0140038	0.00127505	0.0959618	0.0331722
chr7	101929755	101929855	3367490	0	+	0.49	(0.476,0.515]	chr7	315225	132	INTRON	INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000497815.5:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000558469.5:ENST00000560541.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	40	2	2.19809	2.34168	2.48527	0.03496	0.020317	0.13747500000000001	0.121522
chr10	50404377	50404477	4618489	0	-	0.48	(0.476,0.515]	chr10	425422	597	INTRON	INTRON	SGMS1	ENSG00000198964.14	ENST00000429490.5:ENST00000361781.7:ENST00000619438.4:ENST00000492601.2:ENST00000609445.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	65	2	2.09697	2.34156	2.58615	0.0136924	0.00515536	0.0949306	0.0650394
chr7	74967897	74967997	3336406	0	+	0.37	(0.35,0.378]	chr7	310570	24	INTRON	INTRON	CASTOR2	ENSG00000274070.2	ENST00000616305.2	protein_coding	protein_coding	protein_coding	protein_coding	5	71	2	2.32464	2.34151	2.35838	0.0159285	0.00468156	0.101453	0.0631419
chr6	31835794	31835872	2843841	0	+	0.512821	(0.476,0.515]	chr6	267908	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SNHG32	ENSG00000204387.14	ENST00000375640.7:ENST00000375641.6:ENST00000375635.6:ENST00000375638.7:ENST00000648677.1:ENST00000375642.6:ENST00000614363.4:ENST00000395789.5:ENST00000375633.5	lncRNA	lncRNA	lncRNA	lncRNA	64	764	2	2.14956	2.3414650000000004	2.53337	8.25383e-5	8.24106e-6	0.00812487	0.00207261
chr1	108944514	108944606	518978	0	-	0.217391	[0,0.28]	chr1	60901	6	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	CLCC1	ENSG00000121940.17	ENST00000690509.1:ENST00000687328.1:ENST00000685014.1:ENST00000685540.1:ENST00000686576.1:ENST00000688070.1:ENST00000691513.1:ENST00000686821.1:ENST00000692511.1:ENST00000689479.1:ENST00000687646.1:ENST00000687998.1:ENST00000687226.1:ENST00000693336.1:ENST00000689991.1:ENST00000687591.1:ENST00000691777.1:ENST00000690756.1:ENST00000688778.1:ENST00000685104.1:ENST00000689103.1:ENST00000687734.1:ENST00000686434.1:ENST00000685497.1:ENST00000691342.1:ENST00000686776.1:ENST00000692342.1:ENST00000689351.1:ENST00000692584.1:ENST00000692775.1:ENST00000687134.1:ENST00000690707.1:ENST00000687675.1:ENST00000675018.1:ENST00000690781.1:ENST00000691556.1:ENST00000689189.1:ENST00000687099.1:ENST00000685791.1:ENST00000687865.1:ENST00000687449.1:ENST00000688285.1:ENST00000686817.1:ENST00000369968.7:ENST00000674992.1:ENST00000675001.1:ENST00000369969.7:ENST00000356970.6:ENST00000369976.6:ENST00000688610.1:ENST00000675128.1:ENST00000693089.1:ENST00000675571.1:ENST00000675650.1:ENST00000369970.8:ENST00000674561.2:ENST00000675451.1:ENST00000675654.1:ENST00000675790.1:ENST00000675584.1:ENST00000692795.1:ENST00000691731.1:ENST00000689359.1:ENST00000676392.2:ENST00000676391.2:ENST00000676454.1:ENST00000674849.1:ENST00000675956.1:ENST00000302500.5:ENST00000675508.1:ENST00000688168.1:ENST00000693673.1:ENST00000692404.1:ENST00000686078.1:ENST00000690874.1:ENST00000692732.1:ENST00000685628.1:ENST00000676306.1:ENST00000348264.6:ENST00000675247.2:ENST00000676059.2:ENST00000674527.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	59	2	2.27119	2.34144	2.41169	0.070351	0.0122872	0.184298	0.0970106
chr1	17425684	17425784	384845	0	-	0.58	(0.57,1]	chr1	45485	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	RCC2	ENSG00000179051.14	ENST00000375436.9:ENST00000375433.3	protein_coding	protein_coding	protein_coding	protein_coding	6	39	2	2.0955	2.341415	2.58733	0.00622614	0.00454222	0.0718276	0.0595107
chr4	73254578	73254678	2160785	0	-	0.48	(0.476,0.515]	chr4	212799	316	INTRON	INTRON	ANKRD17	ENSG00000132466.20	ENST00000358602.9:ENST00000558247.5:ENST00000330838.10:ENST00000561029.1	protein_coding	protein_coding	protein_coding	protein_coding	3	40	2	1.91817	2.341385	2.7646	0.0459211	0.0162075	0.164984	0.101453
chr11	70435389	70435465	4822006	0	+	0.381579	(0.378,0.408]	chr11	449684	4	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CTTN	ENSG00000085733.16	ENST00000346329.7:ENST00000301843.13:ENST00000376561.7:ENST00000393747.3:ENST00000529736.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	32	399	2	1.97263	2.341355	2.71008	7.71419e-4	9.26688e-6	0.0255407	0.00219306
chr5	454841	454937	2313185	0	+	0.28125	(0.28,0.32]	chr5	223771	4	INTRON	INTRON	EXOC3	ENSG00000180104.16	ENST00000512944.6:ENST00000515601.6:ENST00000315013.9:ENST00000503889.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	51	2	1.90263	2.341335	2.78004	0.0503272	0.0193244	0.17488	0.108861
chr7	105345959	105346059	3603476	0	-	0.32	(0.28,0.32]	chr7	336161	390	INTRON	INTRON	SRPK2	ENSG00000135250.17	ENST00000393651.8:ENST00000482897.5:ENST00000460391.5:ENST00000462282.5:ENST00000465112.5:ENST00000482862.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	51	2	1.90263	2.341335	2.78004	0.0503272	0.0193244	0.17488	0.108861
chr4	110192350	110192450	2227672	0	-	0.29	(0.28,0.32]	chr4	218024	864	INTRON	INTRON	ELOVL6	ENSG00000170522.10	ENST00000394607.7:ENST00000302274.8:ENST00000514184.5:ENST00000506625.5:ENST00000506461.1:ENST00000503885.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	61	2	1.90249	2.341265	2.78004	0.0261803	0.0193244	0.133676	0.108861
chr10	46021232	46021332	4608849	0	-	0.31	(0.28,0.32]	chr10	424578	18	INTRON	INTRON	NCOA4	ENSG00000266412.6	ENST00000581486.6:ENST00000585132.5:ENST00000585056.5:ENST00000580070.5:ENST00000578454.5:ENST00000579039.2	protein_coding	protein_coding	protein_coding	protein_coding	7	91	2	1.90234	2.34119	2.78004	0.0193244	0.00740298	0.108861	0.0770422
chr2	58217337	58217434	1126510	0	-	0.443299	(0.44,0.476]	chr2	120940	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:INTRON	FANCL	ENSG00000115392.13	ENST00000696400.1:ENST00000403295.8:ENST00000696492.1:ENST00000427708.7:ENST00000696314.1:ENST00000696315.1:ENST00000696454.1:ENST00000696508.1:ENST00000696548.1:ENST00000696542.1:ENST00000696319.1:ENST00000403676.6:ENST00000696433.1:ENST00000696434.1:ENST00000696499.1:ENST00000696564.1:ENST00000402135.8:ENST00000696546.1:ENST00000233741.9:ENST00000696316.1:ENST00000696378.1:ENST00000696435.1:ENST00000696493.1:ENST00000696543.1:ENST00000696544.1:ENST00000696545.1:ENST00000696565.1:ENST00000696620.1:ENST00000696621.1:ENST00000696635.1:ENST00000696364.1:ENST00000696634.1:ENST00000696317.1:ENST00000696622.1:ENST00000696467.1:ENST00000696547.1:ENST00000449070.6:ENST00000696305.1:ENST00000417361.2:ENST00000696338.1:ENST00000696361.1:ENST00000696318.1:ENST00000696371.1:ENST00000696409.1:ENST00000696410.1:ENST00000696455.1:ENST00000696468.1:ENST00000696527.1:ENST00000696567.1:ENST00000696324.1:ENST00000696566.1:ENST00000696623.1:ENST00000446381.6:ENST00000696469.1:ENST00000696624.1:ENST00000696411.1:ENST00000470506.2:ENST00000696358.1:ENST00000696373.1:ENST00000696394.1:ENST00000696320.1:ENST00000696395.1:ENST00000696341.1:ENST00000696340.1:ENST00000696374.1:ENST00000696396.1:ENST00000696342.1:ENST00000696325.1:ENST00000696399.1:ENST00000696398.1:ENST00000696306.1:ENST00000696397.1:ENST00000696360.1:ENST00000696344.1:ENST00000696343.1:ENST00000696362.1:ENST00000696528.1:ENST00000696326.1:ENST00000696625.1:ENST00000696510.1:ENST00000696438.1:ENST00000696496.1:ENST00000696509.1:ENST00000696569.1:ENST00000696457.1:ENST00000696458.1:ENST00000696473.1:ENST00000696495.1:ENST00000696415.1:ENST00000696472.1:ENST00000696459.1:ENST00000696416.1:ENST00000696530.1:ENST00000696460.1:ENST00000696570.1:ENST00000696531.1:ENST00000696307.1:ENST00000696345.1:ENST00000696377.1:ENST00000696417.1:ENST00000696594.1:ENST00000696595.1:ENST00000696379.1:ENST00000696346.1:ENST00000696380.1:ENST00000696347.1:ENST00000696461.1:ENST00000696596.1:ENST00000696549.1:ENST00000696597.1:ENST00000696550.1:ENST00000696598.1:ENST00000696321.1:ENST00000696476.1:ENST00000696477.1:ENST00000696511.1:ENST00000481670.3:ENST00000696403.1:ENST00000696551.1:ENST00000696308.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	65	2	1.98938	2.341175	2.69297	0.0198602	0.00333494	0.109608	0.0528877
chr7	10711510	10711610	3483895	0	-	0.47	(0.44,0.476]	chr7	325772	1496	INTRON	INTRON	MGC4859	ENSG00000283117.1	ENST00000634803.1	lncRNA	lncRNA	lncRNA	lncRNA	5	65	2	1.98938	2.341175	2.69297	0.0198602	0.00333494	0.109608	0.0528877
chr17	32150306	32150406	6596897	0	+	0.32	(0.28,0.32]	chr17	641728	72	INTRON	INTRON	RHOT1	ENSG00000126858.19	ENST00000333942.10:ENST00000358365.7:ENST00000583994.5:ENST00000545287.7:ENST00000354266.7:ENST00000581031.5:ENST00000581094.5:ENST00000578205.5:ENST00000580976.1:ENST00000394692.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	61	2	1.76378	2.341145	2.91851	0.0395495	0.0130672	0.161534	0.093385
chr16	72519922	72520020	6517857	0	-	0.357143	(0.35,0.378]	chr16	631338	10	INTRON	INTRON	LINC01572	ENSG00000261008.8	ENST00000624829.4:ENST00000561611.2:ENST00000656218.1:ENST00000666555.2:ENST00000664155.1:ENST00000657725.1:ENST00000563770.5:ENST00000668081.1:ENST00000570152.2	lncRNA	lncRNA	lncRNA	lncRNA	3	44	2	1.81767	2.34109	2.86451	0.0640429	0.0109111	0.177882	0.0923273
chr7	132820122	132820222	3643261	0	-	0.36	(0.35,0.378]	chr7	338830	41	INTRON	INTRON	CHCHD3	ENSG00000106554.13	ENST00000262570.10:ENST00000448878.6:ENST00000496427.5:ENST00000423635.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	44	2	1.81767	2.34109	2.86451	0.0640429	0.0109111	0.177882	0.0923273
chr4	82833567	82833667	2179495	0	-	0.39	(0.378,0.408]	chr4	214267	22	INTRON	INTRON	SEC31A	ENSG00000138674.17	ENST00000395310.7:ENST00000513858.5:ENST00000348405.8:ENST00000503937.5:ENST00000448323.5:ENST00000311785.11:ENST00000509142.5:ENST00000443462.6:ENST00000500777.6:ENST00000505472.5:ENST00000355196.6:ENST00000508502.5:ENST00000264405.9:ENST00000505984.5:ENST00000511338.1:ENST00000515749.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	69	2	2.11194	2.34108	2.57022	0.0292534	0.00179058	0.128055	0.0392749
chr5	10379922	10380020	2317911	0	+	0.306122	(0.28,0.32]	chr5	224624	7	INTRON	INTRON	MARCHF6	ENSG00000145495.16	ENST00000274140.10:ENST00000449913.6:ENST00000502795.5:ENST00000511802.5:ENST00000503788.5:ENST00000640713.1:ENST00000510872.5:ENST00000507863.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	148	2	1.7584	2.341065	2.92373	0.0218117	1.62307e-4	0.11491	0.0109774
chr1	32627865	32627965	415483	0	-	0.46	(0.44,0.476]	chr1	50112	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	ZBTB8OS	ENSG00000176261.16	ENST00000341885.6:ENST00000468695.6:ENST00000492007.6:ENST00000373506.8:ENST00000436661.6:ENST00000473294.7:ENST00000373501.6:ENST00000498691.5:ENST00000467652.5:ENST00000476493.6:ENST00000465588.2:ENST00000483138.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	42	2	2.19078	2.3409500000000003	2.49112	0.0315968	0.0226089	0.144381	0.117489
chr12	57750341	57750441	5339756	0	-	0.45	(0.44,0.476]	chr12	510918	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	CDK4	ENSG00000135446.17	ENST00000312990.10:ENST00000257904.11:ENST00000549606.5:ENST00000553237.5:ENST00000546489.5:ENST00000551888.5:ENST00000547281.5:ENST00000550419.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	42	2	2.19078	2.3409500000000003	2.49112	0.0315968	0.0226089	0.144381	0.117489
chr16	85500989	85501089	6414840	0	+	0.47	(0.44,0.476]	chr16	615465	1417	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	3	42	2	2.19078	2.3409500000000003	2.49112	0.0315968	0.0226089	0.144381	0.117489
chrX	118684423	118684522	7710116	0	+	0.474747	(0.44,0.476]	chrX	788934	8	INTRON	INTRON	DOCK11	ENSG00000147251.16	ENST00000276202.9:ENST00000276204.10:ENST00000633080.1:ENST00000632573.1	protein_coding	protein_coding	protein_coding	protein_coding	3	42	2	2.19078	2.3409500000000003	2.49112	0.0315968	0.0226089	0.144381	0.117489
chr1	197754581	197754681	616738	0	-	0.45	(0.44,0.476]	chr1	72894	184	INTRON	INTRON	DENND1B	ENSG00000213047.13	ENST00000620048.6:ENST00000294737.11:ENST00000367396.7:ENST00000235453.8:ENST00000422998.1:ENST00000468589.5:ENST00000495550.5:ENST00000477581.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	40	2	2.00609	2.3409050000000002	2.67572	0.0360127	0.0212064	0.152355	0.113017
chr17	80588147	80588247	6685218	0	+	0.45	(0.44,0.476]	chr17	653399	420	INTRON	INTRON	RPTOR	ENSG00000141564.15	ENST00000574767.5:ENST00000577161.5:ENST00000306801.8:ENST00000649732.1:ENST00000570891.5:ENST00000544334.6:ENST00000573746.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	40	2	2.00609	2.3409050000000002	2.67572	0.0360127	0.0212064	0.152355	0.113017
chr19	21762909	21763008	7159259	0	-	0.444444	(0.44,0.476]	chr19	723737	90	INTRON	INTRON	ZNF100	ENSG00000197020.12	ENST00000358296.11:ENST00000598026.1:ENST00000596452.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	40	2	2.00609	2.3409050000000002	2.67572	0.0360127	0.0212064	0.152355	0.113017
chr1	226063609	226063681	327775	0	+	0.597222	(0.57,1]	chr1	37740	3	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	H3-3A	ENSG00000163041.13	ENST00000366816.5:ENST00000366814.3:ENST00000366815.10:ENST00000653960.1:ENST00000655399.1:ENST00000667897.1:ENST00000656829.1:ENST00000666609.1:ENST00000661429.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	52	2	2.30813	2.3408949999999997	2.37366	0.00373392	0.00113374	0.0535844	0.0308663
chr17	61846119	61846219	6808761	0	-	0.4	(0.378,0.408]	chr17	672609	3	SS3_PROX	SS3_PROX:INTRON	BRIP1	ENSG00000136492.10	ENST00000259008.7:ENST00000682755.1:ENST00000682453.1:ENST00000683039.1:ENST00000682989.1:ENST00000682589.1:ENST00000683235.1:ENST00000682477.1:ENST00000684584.1:ENST00000577598.5:ENST00000682066.1:ENST00000584322.2:ENST00000683381.1:ENST00000579028.2:ENST00000682611.1:ENST00000683692.1:ENST00000577913.2:ENST00000682369.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	78	2	1.84831	2.340875	2.83344	0.0172621	0.00244811	0.111749	0.0445777
chr12	110534840	110534940	5410003	0	-	0.4	(0.378,0.408]	chr12	516604	17	UTR3	UTR3:EXON_MRNA	PPTC7	ENSG00000196850.6	ENST00000354300.5	protein_coding	protein_coding	protein_coding	protein_coding	4	50	2	1.78011	2.340865	2.90162	0.0356367	0.0113157	0.151629	0.0886121
chr13	32591390	32591490	5465357	0	+	0.39	(0.378,0.408]	chr13	523717	44	INTRON	INTRON	PDS5B	ENSG00000083642.19	ENST00000315596.15:ENST00000482955.5:ENST00000498550.5:ENST00000450460.5:ENST00000493653.1:ENST00000466078.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	50	2	1.78011	2.340865	2.90162	0.0356367	0.0113157	0.151629	0.0886121
chr17	28042774	28042873	6582519	0	+	0.363636	(0.35,0.378]	chr17	639825	2	UTR5	UTR5:EXON_MRNA:SS3_PROX:INTRON	NLK	ENSG00000087095.13	ENST00000583517.1:ENST00000407008.8:ENST00000582037.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	15	205	2	2.30475	2.34084	2.37693	7.25263e-4	4.49525e-4	0.0247646	0.0192381
chr1	65421033	65421130	137186	0	+	0.474227	(0.44,0.476]	chr1	15466	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	LEPROT:LEPR	ENSG00000213625.9:ENSG00000116678.20	ENST00000475108.5:ENST00000371060.7:ENST00000371059.7:ENST00000349533.11:ENST00000371065.9:ENST00000497874.5:ENST00000488747.5:ENST00000484243.1:ENST00000613538.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	54	2	2.08277	2.3408249999999997	2.59888	0.0309998	0.00487719	0.13151	0.0640618
chr5	54075017	54075117	2618556	0	-	0.32	(0.28,0.32]	chr5	248838	1	PRIMIRNA	PRIMIRNA:INTRON	ARL15:ENSG00000265421	ENSG00000185305.12:ENSG00000265421.1	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2:ENST00000581837.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:processed_transcript:primary_miRNA	4	69	2	2.00989	2.34071	2.67153	0.0427801	0.00436402	0.148082	0.060356
chr9	41158820	41158916	4259419	0	-	0.28125	(0.28,0.32]	chr9	391937	18	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	CBWD6	ENSG00000215126.11	ENST00000613716.4:ENST00000377391.8:ENST00000456520.5:ENST00000382436.7:ENST00000494538.6:ENST00000617917.4:ENST00000613125.4:ENST00000610358.4:ENST00000486387.6:ENST00000617722.4:ENST00000467791.5:ENST00000490294.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	69	2	2.00989	2.34071	2.67153	0.0427801	0.00436402	0.148082	0.060356
chr15	27112392	27112492	5983567	0	+	0.37	(0.35,0.378]	chr15	569164	852	INTRON	INTRON	GABRG3	ENSG00000182256.13	ENST00000615808.5:ENST00000555083.5	protein_coding	protein_coding	protein_coding	protein_coding	13	179	2	2.17768	2.340665	2.50365	0.00143675	5.68631e-4	0.034096	0.0217398
chr4	75653090	75653188	2161889	0	-	0.295918	(0.28,0.32]	chr4	212970	29	INTRON	INTRON	G3BP2	ENSG00000138757.15	ENST00000676666.1:ENST00000678062.1:ENST00000678100.1:ENST00000678122.1:ENST00000677265.1:ENST00000678971.1:ENST00000679281.1:ENST00000677333.1:ENST00000676470.1:ENST00000677620.1:ENST00000677606.1:ENST00000678798.1:ENST00000677583.1:ENST00000678447.1:ENST00000678875.1:ENST00000678244.1:ENST00000676974.1:ENST00000677003.1:ENST00000677889.1:ENST00000678329.1:ENST00000676584.1:ENST00000678552.1:ENST00000677192.1:ENST00000677727.1:ENST00000678265.1:ENST00000676839.1:ENST00000677876.1:ENST00000678123.1:ENST00000678578.1:ENST00000677171.1:ENST00000395719.7:ENST00000359707.9:ENST00000677060.1:ENST00000679294.1:ENST00000677201.1:ENST00000677952.1:ENST00000677125.1:ENST00000678273.1:ENST00000357854.7:ENST00000677162.1:ENST00000677566.1:ENST00000677970.1:ENST00000678642.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	83	2	1.86798	2.34066	2.81334	0.0335733	0.00248627	0.134145	0.0461207
chr12	118343429	118343529	5429996	0	-	0.31	(0.28,0.32]	chr12	518768	459	INTRON	INTRON	TAOK3	ENSG00000135090.14	ENST00000392533.8:ENST00000419821.6:ENST00000541186.5:ENST00000541878.5:ENST00000542902.5:ENST00000542532.5:ENST00000541786.5:ENST00000539872.5:ENST00000542692.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	51	2	1.76293	2.340625	2.91832	0.0766478	0.0102484	0.196164	0.089002
chr5	160101254	160101354	2759618	0	-	0.5	(0.476,0.515]	chr5	260436	68	INTRON	INTRON	PWWP2A	ENSG00000170234.13	ENST00000456329.7:ENST00000523662.1:ENST00000307063.9:ENST00000520662.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	65	2	2.26789	2.340585	2.41328	0.0176567	0.00355364	0.105233	0.0547657
chr6	36601190	36601276	2854490	0	+	0.383721	(0.378,0.408]	chr6	269795	1	EXON_MRNA	EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SRSF3	ENSG00000112081.17	ENST00000373715.11:ENST00000477442.6:ENST00000620941.1:ENST00000620389.1:ENST00000614136.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	52	2	1.82258	2.34056	2.85854	0.0341279	0.0107837	0.135102	0.0920575
chr2	38745554	38745643	1099812	0	-	0.561798	(0.515,0.57]	chr2	117976	4	SS3_PROX	SS3_PROX:INTRON	SRSF7	ENSG00000115875.19	ENST00000446327.6:ENST00000313117.11:ENST00000425778.5:ENST00000425941.6:ENST00000452806.5:ENST00000409276.5:ENST00000432873.5:ENST00000431066.5:ENST00000477635.5:ENST00000443213.5:ENST00000487773.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	37	2	2.32967	2.34046	2.35125	0.0436431	0.0133671	0.162255	0.0946278
chr17	67072320	67072419	6824057	0	-	0.373737	(0.35,0.378]	chr17	674357	20	UTR3	UTR3:EXON_MRNA	HELZ	ENSG00000198265.12	ENST00000358691.10	protein_coding	protein_coding	protein_coding	protein_coding	21	244	2	1.63573	2.340455	3.04518	0.00408718	5.31993e-5	0.0581924	0.00639382
chr7	105290231	105290331	3602915	0	-	0.3	(0.28,0.32]	chr7	336144	210	INTRON	INTRON	SRPK2	ENSG00000135250.17	ENST00000393651.8:ENST00000489828.5:ENST00000482897.5:ENST00000460391.5:ENST00000462282.5:ENST00000465112.5:ENST00000482862.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	54	2	2.22069	2.340435	2.46018	0.0375904	0.0243177	0.156054	0.12011
chr1	90839457	90839556	501302	0	-	0.444444	(0.44,0.476]	chr1	59455	13	INTRON	INTRON	LINC02609	ENSG00000233593.11	ENST00000671059.1:ENST00000659034.2:ENST00000669273.1:ENST00000657053.2:ENST00000635581.3:ENST00000634619.2:ENST00000668679.1:ENST00000653770.2:ENST00000658618.2:ENST00000606660.1:ENST00000443802.2:ENST00000655784.1:ENST00000687288.1:ENST00000664774.1:ENST00000670028.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	6	74	2	2.08453	2.3404249999999998	2.59632	0.00689	0.00579248	0.0750118	0.0662959
chr17	30860912	30861012	6590722	0	+	0.46	(0.44,0.476]	chr17	640971	3	SS5_PROX	SS5_PROX:INTRON	ATAD5	ENSG00000176208.9	ENST00000321990.5:ENST00000578295.5:ENST00000585133.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:non_stop_decay	6	74	2	2.08453	2.3404249999999998	2.59632	0.00689	0.00579248	0.0750118	0.0662959
chr7	107086585	107086684	3377586	0	+	0.50505	(0.476,0.515]	chr7	316248	159	INTRON	INTRON	PRKAR2B	ENSG00000005249.13	ENST00000265717.5:ENST00000393613.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	99	2	1.75694	2.3404	2.92386	0.0175942	3.01132e-4	0.105143	0.0155054
chr8	143584348	143584446	4083160	0	-	0.44898	(0.44,0.476]	chr8	370980	2	INTRON	INTRON	EEF1D	ENSG00000104529.19	ENST00000317198.10:ENST00000532400.1:ENST00000529272.5:ENST00000395119.7:ENST00000533833.5:ENST00000528610.5:ENST00000442189.6:ENST00000618139.4:ENST00000526838.5:ENST00000532741.5:ENST00000531621.5:ENST00000529007.5:ENST00000524624.5:ENST00000530191.6:ENST00000534377.6:ENST00000529516.6:ENST00000419152.7:ENST00000531218.6:ENST00000533494.6:ENST00000534380.6:ENST00000530445.6:ENST00000524397.5:ENST00000528382.1:ENST00000526786.5:ENST00000530616.5:ENST00000530848.5:ENST00000534232.5:ENST00000533749.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	78	2	2.2543	2.3403650000000003	2.42643	0.00787184	0.0033369	0.076155	0.0528877
chr19	5709054	5709150	7124598	0	-	0.59375	(0.57,1]	chr19	717144	2	INTRON	INTRON	LONP1	ENSG00000196365.12	ENST00000360614.8:ENST00000587552.5:ENST00000540670.6:ENST00000593119.5:ENST00000585374.5:ENST00000590558.5:ENST00000590729.5:ENST00000587365.1:ENST00000586617.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	71	2	2.24207	2.34035	2.43863	0.00159402	2.75362e-4	0.0364566	0.0147997
chr1	45920030	45920130	94981	0	+	0.41	(0.408,0.44]	chr1	12715	21	INTRON	INTRON	MAST2	ENSG00000086015.23	ENST00000361297.7:ENST00000372008.6:ENST00000674079.1	protein_coding	protein_coding	protein_coding	protein_coding	2	30	2	2.18807	2.340325	2.49258	0.0708044	0.0314608	0.184528	0.144381
chr15	90553236	90553336	6099961	0	+	0.43	(0.408,0.44]	chr15	580749	127	INTRON	INTRON	CRTC3	ENSG00000140577.17	ENST00000268184.11:ENST00000420329.6:ENST00000691029.1:ENST00000686240.1:ENST00000560098.5:ENST00000561218.5:ENST00000692149.1:ENST00000558619.5:ENST00000560927.1:ENST00000687075.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	30	2	2.18807	2.340325	2.49258	0.0708044	0.0314608	0.184528	0.144381
chr7	107101574	107101674	3377737	0	+	0.43	(0.408,0.44]	chr7	316252	93	INTRON	INTRON	PRKAR2B	ENSG00000005249.13	ENST00000265717.5:ENST00000393613.6:ENST00000488792.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	30	2	2.18807	2.340325	2.49258	0.0708044	0.0314608	0.184528	0.144381
chr2	197500139	197500238	968510	0	+	0.575758	(0.57,1]	chr2	104778	1	UTR5	UTR5:EXON_MRNA	HSPE1	ENSG00000115541.11	ENST00000409729.1	protein_coding	protein_coding	protein_coding	protein_coding	6	41	2	2.24434	2.34029	2.43624	0.00677343	0.00279586	0.074225	0.0469265
chr3	43409324	43409424	1673306	0	-	0.45	(0.44,0.476]	chr3	170966	361	INTRON	INTRON	ANO10	ENSG00000160746.13	ENST00000292246.8:ENST00000350459.8:ENST00000396091.7:ENST00000414522.6:ENST00000451430.6:ENST00000448045.1	protein_coding	protein_coding	protein_coding	protein_coding	5	55	2	1.65297	2.34024	3.02751	0.0331814	0.00715968	0.145918	0.0723634
chr6	20428323	20428423	2827712	0	+	0.45	(0.44,0.476]	chr6	265575	241	INTRON	INTRON	E2F3	ENSG00000112242.16	ENST00000346618.8:ENST00000535432.2	protein_coding	protein_coding	protein_coding	protein_coding	5	55	2	1.65297	2.34024	3.02751	0.0331814	0.00715968	0.145918	0.0723634
chr17	29292288	29292388	6747779	0	-	0.48	(0.476,0.515]	chr17	663234	42	INTRON	INTRON	NUFIP2	ENSG00000108256.9	ENST00000225388.9:ENST00000579665.1	protein_coding	protein_coding	protein_coding	protein_coding	5	55	2	1.48023	2.33999	3.19975	0.0559072	0.00383299	0.18407	0.0542786
chr12	64412158	64412256	5152958	0	+	0.479592	(0.476,0.515]	chr12	487727	17	INTRON	INTRON	XPOT	ENSG00000184575.12	ENST00000332707.10:ENST00000540203.5:ENST00000400935.2	protein_coding	protein_coding	protein_coding	protein_coding	4	48	2	1.91525	2.339925	2.7646	0.0232571	0.0162075	0.127416	0.101453
chr15	27138384	27138484	5983827	0	+	0.33	(0.32,0.35]	chr15	569164	1112	INTRON	INTRON	GABRG3	ENSG00000182256.13	ENST00000615808.5:ENST00000555083.5	protein_coding	protein_coding	protein_coding	protein_coding	3	47	2	1.83416	2.339925	2.84569	0.0631198	0.0121137	0.176946	0.0962599
chr19	53078602	53078700	7210314	0	-	0.346939	(0.32,0.35]	chr19	731876	8	INTRON	INTRON	ZNF160	ENSG00000170949.18	ENST00000599056.5:ENST00000418871.5:ENST00000429604.5:ENST00000683776.1:ENST00000599247.5:ENST00000601982.5:ENST00000355147.9:ENST00000599729.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	47	2	1.83416	2.339925	2.84569	0.0631198	0.0121137	0.176946	0.0962599
chr5	54153779	54153879	2619347	0	-	0.33	(0.32,0.35]	chr5	248848	400	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2:ENST00000505630.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	47	2	1.83416	2.339925	2.84569	0.0631198	0.0121137	0.176946	0.0962599
chr9	94832878	94832978	4164110	0	+	0.35	(0.32,0.35]	chr9	379584	315	INTRON	INTRON	AOPEP	ENSG00000148120.18	ENST00000375315.8:ENST00000277198.6:ENST00000297979.9:ENST00000424143.5	protein_coding	protein_coding	protein_coding	protein_coding	3	47	2	1.83416	2.339925	2.84569	0.0631198	0.0121137	0.176946	0.0962599
chr10	31907771	31907871	4590110	0	-	0.29	(0.28,0.32]	chr10	423164	2	SS5_PROX	SS5_PROX:INTRON	ARHGAP12	ENSG00000165322.18	ENST00000344936.7:ENST00000375245.8:ENST00000396144.8:ENST00000375250.9:ENST00000311380.8	protein_coding	protein_coding	protein_coding	protein_coding	7	114	2	2.18092	2.339905	2.49889	0.0271832	7.47369e-4	0.123904	0.0250515
chr1	113947849	113947949	191982	0	+	0.41	(0.408,0.44]	chr1	21149	60	INTRON	INTRON	HIPK1	ENSG00000163349.22	ENST00000426820.7:ENST00000626993.2:ENST00000369559.8:ENST00000369558.5:ENST00000369561.8:ENST00000369555.6	protein_coding	protein_coding	protein_coding	protein_coding	4	49	2	1.53263	2.339845	3.14706	0.0733439	0.00382411	0.190051	0.0562562
chr20	35060752	35060851	7332583	0	-	0.333333	(0.32,0.35]	chr20	746961	28	INTRON	INTRON	TRPC4AP	ENSG00000100991.12	ENST00000252015.3:ENST00000451813.6	protein_coding	protein_coding	protein_coding	protein_coding	4	57	2	2.10695	2.33979	2.57263	0.0312297	0.0127483	0.13151	0.0987441
chr6	34608003	34608103	3085330	0	-	0.5	(0.476,0.515]	chr6	288679	7	INTRON	INTRON	ILRUN	ENSG00000196821.10	ENST00000374026.7:ENST00000374023.8:ENST00000374021.1	protein_coding	protein_coding	protein_coding	protein_coding	6	61	2	1.38864	2.33969	3.29074	0.0547008	0.00272563	0.182743	0.0467523
chr6	99412075	99412170	3166010	0	-	0.378947	(0.378,0.408]	chr6	295317	4	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	PNISR	ENSG00000132424.17	ENST00000681615.1:ENST00000369239.10:ENST00000647811.1:ENST00000481229.2:ENST00000679525.1:ENST00000681611.1:ENST00000438806.5:ENST00000478777.5:ENST00000492294.5:ENST00000498075.1:ENST00000466057.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	14	178	2	2.26421	2.339555	2.4149	0.00247269	1.54286e-4	0.0446195	0.0106835
chr12	120200150	120200244	5433306	0	-	0.542553	(0.515,0.57]	chr12	519368	1	EXON_MRNA	EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPLP0	ENSG00000089157.16	ENST00000392514.9:ENST00000551150.5:ENST00000546989.5:ENST00000313104.9:ENST00000228306.8:ENST00000552461.5:ENST00000549098.5:ENST00000551258.5:ENST00000546990.5:ENST00000547211.5:ENST00000547475.5:ENST00000547173.5:ENST00000550856.5:ENST00000548568.5:ENST00000546564.5:ENST00000547191.5:ENST00000550296.5:ENST00000552902.5:ENST00000548495.5:ENST00000550423.5:ENST00000551914.1:ENST00000548551.5:ENST00000549242.1:ENST00000551783.1:ENST00000551336.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	17	209	2	1.85278	2.339545	2.82631	0.00514125	7.67397e-6	0.064995	0.0020859
chr14	21254693	21254793	5835019	0	-	0.54	(0.515,0.57]	chr14	554464	1	SS3_PROX	SS3_PROX:INTRON	HNRNPC	ENSG00000092199.19	ENST00000336053.10:ENST00000553300.6:ENST00000554969.5:ENST00000556142.5:ENST00000554455.5:ENST00000430246.6:ENST00000553753.5:ENST00000555309.5:ENST00000555914.5:ENST00000557442.5:ENST00000556628.5:ENST00000556513.5:ENST00000555883.5:ENST00000557201.5:ENST00000556897.5:ENST00000420743.6:ENST00000554539.5:ENST00000554383.5:ENST00000555215.5:ENST00000555137.5:ENST00000554891.5:ENST00000556226.5:ENST00000555176.5:ENST00000553614.5:ENST00000557336.1:ENST00000557768.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	117	2	2.32131	2.33954	2.35777	0.00139342	5.59179e-4	0.0340865	0.0215535
chr10	3784412	3784512	4543194	0	-	0.38	(0.378,0.408]	chr10	419515	1	SS5_PROX	SS5_PROX:INTRON	KLF6	ENSG00000067082.15	ENST00000497571.6:ENST00000542957.1:ENST00000469435.1:ENST00000380946.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	93	2	1.91906	2.339515	2.75997	0.0153989	7.19668e-4	0.100621	0.0244856
chr6	20493116	20493216	2828369	0	+	0.24	[0,0.28]	chr6	265618	28	UTR3	UTR3:EXON_MRNA	E2F3	ENSG00000112242.16	ENST00000346618.8:ENST00000535432.2	protein_coding	protein_coding	protein_coding	protein_coding	2	43	2	2.29142	2.3394950000000003	2.38757	0.0592143	0.0552962	0.189982	0.165463
chr5	62472652	62472749	2363610	0	+	0.525773	(0.515,0.57]	chr5	227890	20	INTRON	INTRON	IPO11	ENSG00000086200.17	ENST00000424533.5:ENST00000325324.11:ENST00000409296.7:ENST00000507640.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	57	2	2.28534	2.3394250000000003	2.39351	0.0100431	0.0061678	0.0881096	0.067653
chr11	62882666	62882736	4799609	0	+	0.457143	(0.44,0.476]	chr11	444824	1	CDS	CDS:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SLC3A2	ENSG00000168003.18	ENST00000680729.1:ENST00000680002.1:ENST00000681467.1:ENST00000377890.6:ENST00000538084.2:ENST00000681569.1:ENST00000680725.1:ENST00000377891.6:ENST00000377889.6:ENST00000681215.1:ENST00000535296.5:ENST00000680631.1:ENST00000544377.2:ENST00000680610.1:ENST00000680297.1:ENST00000680134.1:ENST00000681232.1:ENST00000681657.1:ENST00000541425.6:ENST00000679908.1:ENST00000681563.1:ENST00000338663.12:ENST00000680654.1:ENST00000681107.1:ENST00000541649.2:ENST00000538682.6:ENST00000536981.6:ENST00000539891.6:ENST00000679594.1:ENST00000535768.2:ENST00000537508.6:ENST00000537839.5:ENST00000546253.5:ENST00000457660.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	15	158	2	1.98149	2.33942	2.69735	0.00125459	9.49545e-4	0.0323608	0.0282614
chr15	58023842	58023942	6187121	0	-	0.53	(0.515,0.57]	chr15	589778	92	INTRON	INTRON	ALDH1A2	ENSG00000128918.15	ENST00000537372.5:ENST00000249750.9:ENST00000347587.7:ENST00000430119.6:ENST00000558231.5:ENST00000559266.5:ENST00000561070.5:ENST00000558595.5:ENST00000558239.5:ENST00000557967.5:ENST00000558073.5:ENST00000559297.5:ENST00000560122.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	65	2	1.68552	2.33934	2.99316	0.0292028	9.21623e-4	0.141637	0.0278396
chr1	2231795	2231892	2200	0	+	0.649485	(0.57,1]	chr1	549	17	INTRON	INTRON	SKI	ENSG00000157933.10	ENST00000378536.5	protein_coding	protein_coding	protein_coding	protein_coding	4	29	2	2.02391	2.339305	2.6547	0.0339274	0.00346848	0.134508	0.0539802
chr9	130608793	130608893	4213386	0	+	0.4	(0.378,0.408]	chr9	386279	4	SS5_PROX	SS5_PROX:INTRON	FUBP3	ENSG00000107164.16	ENST00000319725.10:ENST00000650723.1:ENST00000465949.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	77	2	2.0848	2.3392999999999997	2.5938	0.00697927	0.00614976	0.0754576	0.0676501
chr1	162526938	162527037	238290	0	+	0.323232	(0.32,0.35]	chr1	28688	45	UTR3	UTR3:EXON_MRNA	UHMK1	ENSG00000152332.16	ENST00000545294.5:ENST00000538489.5:ENST00000489294.2	protein_coding	protein_coding	protein_coding	protein_coding	8	84	2	1.25832	2.33929	3.42026	0.0563972	0.00219805	0.184423	0.0417893
chr3	23889759	23889842	1388575	0	+	0.481928	(0.476,0.515]	chr3	145407	1	INTRON	INTRON	UBE2E1	ENSG00000170142.12	ENST00000306627.8:ENST00000346855.7:ENST00000424381.5:ENST00000475680.5:ENST00000452012.1:ENST00000493707.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	66	2	2.24612	2.33927	2.43242	0.0091895	0.00799949	0.0855292	0.0766625
chrX	124038914	124039013	7717532	0	+	0.323232	(0.32,0.35]	chrX	789512	9	INTRON	INTRON	STAG2	ENSG00000101972.20	ENST00000218089.13:ENST00000455404.5:ENST00000483575.5:ENST00000687810.1:ENST00000687071.1:ENST00000469481.1:ENST00000371160.5:ENST00000435103.5:ENST00000687852.1:ENST00000371145.8:ENST00000692982.1:ENST00000371157.7:ENST00000691035.1:ENST00000686802.1:ENST00000691383.1:ENST00000686127.1:ENST00000371144.7:ENST00000458176.5:ENST00000466748.5:ENST00000471107.1:ENST00000428941.5:ENST00000435215.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	65	2	1.88141	2.33924	2.79707	0.0170923	0.0161424	0.109464	0.104099
chr2	61527310	61527407	1131119	0	-	0.43299	(0.408,0.44]	chr2	121631	4	INTRON	INTRON	XPO1	ENSG00000082898.19	ENST00000676553.1:ENST00000677556.1:ENST00000677814.1:ENST00000676771.1:ENST00000677803.1:ENST00000677239.1:ENST00000678790.1:ENST00000677928.1:ENST00000678182.1:ENST00000677150.1:ENST00000678172.1:ENST00000678360.1:ENST00000678081.1:ENST00000676889.1:ENST00000676783.1:ENST00000679035.1:ENST00000677422.1:ENST00000677417.1:ENST00000677813.1:ENST00000676999.1:ENST00000676667.1:ENST00000678263.1:ENST00000678877.1:ENST00000677933.1:ENST00000680228.1:ENST00000401558.7:ENST00000428210.5:ENST00000677290.1:ENST00000677850.1:ENST00000451765.6:ENST00000676789.1:ENST00000678741.1:ENST00000404992.6:ENST00000406957.5:ENST00000443240.5:ENST00000420673.6:ENST00000481214.1:ENST00000495003.1:ENST00000449444.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	14	189	2	1.75902	2.33915	2.91928	0.0132052	7.33272e-6	0.0940535	0.00192248
chr1	54368402	54368502	463381	0	-	0.45	(0.44,0.476]	chr1	55784	117	INTRON	INTRON	SSBP3	ENSG00000157216.16	ENST00000610401.5:ENST00000357475.9:ENST00000371319.8:ENST00000417664.7:ENST00000533946.6:ENST00000371320.8:ENST00000525990.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	48	2	1.81595	2.33913	2.86231	0.0317953	0.012214	0.14477	0.0910127
chr19	49165244	49165342	7089107	0	+	0.459184	(0.44,0.476]	chr19	709755	55	INTRON	INTRON	TRPM4	ENSG00000130529.16	ENST00000598691.5:ENST00000598697.5:ENST00000252826.10:ENST00000595519.5:ENST00000427978.6:ENST00000598502.5:ENST00000596338.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	48	2	1.81595	2.33913	2.86231	0.0317953	0.012214	0.14477	0.0910127
chr9	112088620	112088720	4315902	0	-	0.45	(0.44,0.476]	chr9	396924	81	INTRON	INTRON	SUSD1	ENSG00000106868.17	ENST00000374270.8:ENST00000374263.7:ENST00000355396.7:ENST00000374264.6:ENST00000529933.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	48	2	1.81595	2.33913	2.86231	0.0317953	0.012214	0.14477	0.0910127
chr1	246929034	246929134	681934	0	-	0.4	(0.378,0.408]	chr1	80043	103	INTRON	INTRON	AHCTF1	ENSG00000153207.16	ENST00000648844.2:ENST00000326225.3:ENST00000366508.5	protein_coding	protein_coding	protein_coding	protein_coding	16	193	2	1.67025	2.339075	3.0079	0.00774615	2.65136e-5	0.0757402	0.00405913
chr4	80020170	80020269	2170015	0	-	0.454545	(0.44,0.476]	chr4	213885	8	INTRON	INTRON	ANTXR2	ENSG00000163297.18	ENST00000403729.7:ENST00000449651.5:ENST00000679571.1:ENST00000681710.1:ENST00000680913.1:ENST00000681115.1:ENST00000404191.5:ENST00000346652.10:ENST00000307333.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	99	2	2.22991	2.339015	2.44812	0.00368597	0.00208483	0.0535094	0.0424672
chr9	73152815	73152913	4142381	0	+	0.255102	[0,0.28]	chr9	377521	5	INTRON	INTRON	ANXA1	ENSG00000135046.14	ENST00000257497.11:ENST00000456643.5:ENST00000468639.5:ENST00000415424.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	71	2	2.13176	2.339	2.54624	0.0388449	0.0135097	0.143072	0.101363
chr7	135974328	135974428	3649442	0	-	0.45	(0.44,0.476]	chr7	339214	223	INTRON	INTRON	MTPN	ENSG00000105887.11	ENST00000393085.4:ENST00000435723.1	protein_coding	protein_coding	protein_coding	protein_coding	6	74	2	2.12136	2.338925	2.55649	0.00670547	0.00591413	0.0707084	0.0694038
chr1	202764927	202765025	620303	0	-	0.408163	(0.378,0.408]	chr1	73634	9	EXON_MRNA	EXON_MRNA:INTRON	KDM5B	ENSG00000117139.18	ENST00000367265.9:ENST00000648338.1:ENST00000649542.1:ENST00000647757.1:ENST00000367264.7:ENST00000648473.1:ENST00000650569.1:ENST00000648056.1:ENST00000649770.1:ENST00000648469.1:ENST00000650417.1:ENST00000235790.9:ENST00000650422.1:ENST00000648738.1:ENST00000648744.1:ENST00000648958.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	68	2	1.73164	2.3388850000000003	2.94613	0.0441773	0.00112461	0.149888	0.0308177
chr5	98922742	98922842	2684012	0	-	0.51	(0.476,0.515]	chr5	253957	173	INTRON	INTRON	CHD1	ENSG00000153922.11	ENST00000614616.5:ENST00000284049.7	protein_coding	protein_coding	protein_coding	protein_coding	6	74	2	1.82595	2.33886	2.85177	0.0202339	0.00169916	0.109955	0.0381936
chr5	34905551	34905648	2600541	0	-	0.298969	(0.28,0.32]	chr5	247083	4	UTR3	UTR3:EXON_MRNA	RAD1	ENSG00000113456.19	ENST00000382038.7	protein_coding	protein_coding	protein_coding	protein_coding	7	107	2	1.73523	2.338835	2.94244	0.0234982	0.00144407	0.118716	0.0348397
chr1	28888603	28888702	58694	0	+	0.494949	(0.476,0.515]	chr1	7613	10	INTRON	INTRON	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000647918.1:ENST00000646800.1:ENST00000644342.1:ENST00000646189.1:ENST00000482464.6:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	82	2	1.97876	2.33881	2.69886	0.00655939	0.00385209	0.0735539	0.0542786
chr21	39246407	39246506	7464851	0	-	0.424242	(0.408,0.44]	chr21	760470	75	INTRON	INTRON	BRWD1	ENSG00000185658.14	ENST00000333229.6:ENST00000342449.8:ENST00000446924.5:ENST00000380800.7:ENST00000430093.5:ENST00000445245.5:ENST00000445668.5:ENST00000412604.1:ENST00000455867.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	102	2	2.19524	2.338805	2.48237	0.00990486	5.72623e-4	0.0838372	0.0217398
chr14	93331803	93331903	5963926	0	-	0.6	(0.57,1]	chr14	566293	1	SS5_PROX	SS5_PROX:INTRON	BTBD7	ENSG00000011114.15	ENST00000334746.10:ENST00000554565.5:ENST00000298896.7:ENST00000554968.1	protein_coding	protein_coding	protein_coding	protein_coding	4	26	2	1.89351	2.3388	2.78409	0.0255126	0.0116033	0.133676	0.0889104
chr16	89479051	89479151	6543487	0	-	0.58	(0.57,1]	chr16	634281	474	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	26	2	1.89351	2.3388	2.78409	0.0255126	0.0116033	0.133676	0.0889104
chr2	27597167	27597267	718075	0	+	0.35	(0.32,0.35]	chr2	83352	131	INTRON	INTRON	ZNF512	ENSG00000243943.10	ENST00000413371.6:ENST00000416005.6:ENST00000556601.5:ENST00000379717.5:ENST00000355467.6:ENST00000494548.1:ENST00000461705.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	63	2	2.09005	2.3387900000000004	2.58753	0.0330483	0.00560122	0.133816	0.0678837
chr3	25657841	25657941	1642099	0	-	0.52	(0.515,0.57]	chr3	168598	120	INTRON	INTRON	TOP2B	ENSG00000077097.16	ENST00000264331.9:ENST00000435706.6:ENST00000424225.1	protein_coding	protein_coding	protein_coding	protein_coding	4	47	2	2.1885	2.3387599999999997	2.48902	0.0202537	0.00760558	0.121364	0.0749571
chr11	68514527	68514627	4817872	0	+	0.36	(0.35,0.378]	chr11	448914	1	SS3_PROX	SS3_PROX:INTRON	PPP6R3	ENSG00000110075.15	ENST00000530427.5:ENST00000528635.5:ENST00000529907.5:ENST00000533127.5:ENST00000534534.5:ENST00000529344.5:ENST00000524845.5:ENST00000393800.7:ENST00000265637.8:ENST00000524904.5:ENST00000393801.7:ENST00000265636.9:ENST00000529710.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	59	2	2.04224	2.338755	2.63527	0.0363073	0.00443588	0.138959	0.061054
chr6	75256595	75256695	3140293	0	-	0.39	(0.378,0.408]	chr6	292646	3	SS3_PROX	SS3_PROX:INTRON	TMEM30A	ENSG00000112697.17	ENST00000230461.11:ENST00000673730.1:ENST00000674104.1:ENST00000673989.1:ENST00000674151.1:ENST00000370050.9:ENST00000475111.6:ENST00000674038.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	68	2	2.21238	2.338735	2.46509	0.0218124	0.00287152	0.11491	0.0494641
chr10	94567912	94568010	4499843	0	+	0.510204	(0.476,0.515]	chr10	414246	47	INTRON	INTRON	HELLS	ENSG00000119969.15	ENST00000239026.10:ENST00000371332.8:ENST00000348459.10:ENST00000419900.5:ENST00000394036.5:ENST00000394045.5:ENST00000462057.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	41	2	2.10874	2.33871	2.56868	0.0285608	0.0256676	0.133676	0.12666
chr9	130820753	130820853	4214932	0	+	0.28	[0,0.28]	chr9	386427	1059	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000393293.4	protein_coding	protein_coding	protein_coding	protein_coding	5	83	2	1.58141	2.33864	3.09587	0.0540605	0.00651565	0.164565	0.0735232
chr7	107128795	107128894	3378011	0	+	0.363636	(0.35,0.378]	chr7	316264	1	INTRON	INTRON	PRKAR2B	ENSG00000005249.13	ENST00000265717.5:ENST00000393613.6:ENST00000488792.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	151	2	2.19049	2.338625	2.48676	0.00365102	3.61706e-4	0.0535094	0.0169808
chr4	103172138	103172238	2215334	0	-	0.32	(0.28,0.32]	chr4	217118	82	INTRON	INTRON	CENPE	ENSG00000138778.14	ENST00000380026.8:ENST00000265148.9	protein_coding	protein_coding	protein_coding	protein_coding	6	78	2	1.63236	2.338605	3.04485	0.0273014	0.00894006	0.136494	0.0799922
chr9	37185012	37185112	4118305	0	+	0.35	(0.32,0.35]	chr9	375384	249	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000322831.6:ENST00000461038.5:ENST00000488607.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	139	2	1.69257	2.338585	2.9846	0.0122626	4.60773e-4	0.0969406	0.0198052
chr4	159135696	159135796	2073826	0	+	0.48	(0.476,0.515]	chr4	205172	311	INTRON	INTRON	RAPGEF2	ENSG00000109756.10	ENST00000644474.1:ENST00000691494.1:ENST00000505478.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	49	2	2.11679	2.33856	2.56033	0.0287634	0.0115627	0.127066	0.0962115
chr10	31807460	31807558	4589085	0	-	0.408163	(0.378,0.408]	chr10	423065	22	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ARHGAP12	ENSG00000165322.18	ENST00000344936.7:ENST00000375245.8:ENST00000396144.8:ENST00000375250.9:ENST00000311380.8:ENST00000492028.5:ENST00000497085.1:ENST00000493008.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	88	2	1.84742	2.338545	2.82967	0.013385	0.00189968	0.0946278	0.0402736
chr7	149026561	149026659	3671030	0	-	0.540816	(0.515,0.57]	chr7	340694	51	INTRON	INTRON	PDIA4	ENSG00000155660.11	ENST00000652332.1:ENST00000286091.9:ENST00000413966.1	protein_coding	protein_coding	protein_coding	protein_coding	6	64	2	1.94449	2.3385350000000003	2.73258	0.0122196	0.00260192	0.0910127	0.0470772
chr4	126715671	126715771	2237867	0	-	0.46	(0.44,0.476]	chr4	219029	170	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	8	93	2	2.16148	2.3385100000000003	2.51554	0.00777207	0.00182519	0.0757731	0.0396683
chr1	244862098	244862197	673082	0	-	0.30303	(0.28,0.32]	chr1	79634	17	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	HNRNPU	ENSG00000153187.20	ENST00000649899.1:ENST00000640306.1:ENST00000444376.7:ENST00000640218.2:ENST00000639628.2:ENST00000440865.2:ENST00000638952.1:ENST00000366525.8:ENST00000639880.1:ENST00000283179.14:ENST00000638475.1:ENST00000476241.2:ENST00000640001.1:ENST00000640056.1:ENST00000638301.1:ENST00000639667.1:ENST00000640440.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	21	331	2	2.24582	2.338505	2.43119	5.01425e-4	3.42197e-4	0.0207034	0.0164987
chr20	35741840	35741940	7336562	0	-	0.59	(0.57,1]	chr20	747517	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	RBM39	ENSG00000131051.24	ENST00000253363.11:ENST00000639702.1:ENST00000656873.1:ENST00000463004.5:ENST00000361162.10:ENST00000403542.6:ENST00000338163.10:ENST00000528062.7:ENST00000429968.5:ENST00000444878.5:ENST00000665058.1:ENST00000374038.7:ENST00000412738.5:ENST00000455343.5:ENST00000442447.5:ENST00000433027.5:ENST00000453310.5:ENST00000416529.5:ENST00000397370.3:ENST00000463098.5:ENST00000461849.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	15	100	2	1.85494	2.338505	2.82207	0.00350195	9.5032e-6	0.0544406	0.00236677
chr1	193202594	193202694	285428	0	+	0.38	(0.378,0.408]	chr1	32823	155	INTRON	INTRON	CDC73	ENSG00000134371.14	ENST00000649895.1:ENST00000643006.1:ENST00000367435.5:ENST00000650197.1:ENST00000648071.1:ENST00000635846.1:ENST00000649613.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	71	2	1.94681	2.33842	2.73003	0.0457723	8.35208e-4	0.149888	0.0263691
chr20	47337257	47337357	7349317	0	-	0.49	(0.476,0.515]	chr20	749346	183	INTRON	INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000435836.5:ENST00000446894.5:ENST00000441977.1	protein_coding	protein_coding	protein_coding	protein_coding	6	76	2	2.09066	2.338405	2.58615	0.00772252	0.00515536	0.0756858	0.0650394
chr1	207767441	207767523	305058	0	+	0.231707	[0,0.28]	chr1	35109	4	EXON_MRNA	EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CD46	ENSG00000117335.21	ENST00000695779.1:ENST00000695777.1:ENST00000695778.1:ENST00000496723.2:ENST00000695782.1:ENST00000695781.1:ENST00000695780.1:ENST00000636114.2:ENST00000367042.6:ENST00000322875.8:ENST00000322918.9:ENST00000354848.5:ENST00000357714.5:ENST00000358170.6:ENST00000367041.5:ENST00000367047.5:ENST00000695783.1:ENST00000695784.1:ENST00000469535.5:ENST00000360212.6:ENST00000480003.5:ENST00000695785.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	21	330	2	1.80599	2.33838	2.87077	0.00289294	3.59173e-4	0.0494641	0.0175484
chr12	56684879	56684978	5336047	0	-	0.373737	(0.35,0.378]	chr12	510192	115	INTRON	INTRON	PTGES3	ENSG00000110958.16	ENST00000537473.2:ENST00000614328.4:ENST00000262033.11:ENST00000414274.7:ENST00000436399.6:ENST00000448157.6:ENST00000456859.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	71	2	1.95579	2.3383599999999998	2.72093	0.0234538	0.00314173	0.11867	0.0514466
chr18	13037501	13037601	6877043	0	+	0.29	(0.28,0.32]	chr18	681408	2	SS5_PROX	SS5_PROX:INTRON	CEP192	ENSG00000101639.19	ENST00000325971.12:ENST00000506447.5:ENST00000589596.5:ENST00000513432.5:ENST00000511820.6:ENST00000510237.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	83	2	1.79721	2.338275	2.87934	0.0408024	0.00189034	0.1451	0.0402736
chr10	6576011	6576111	4547379	0	-	0.47	(0.44,0.476]	chr10	420056	605	INTRON	INTRON	PRKCQ	ENSG00000065675.16	ENST00000397176.6:ENST00000539722.5:ENST00000263125.10	protein_coding	protein_coding	protein_coding	protein_coding	2	30	2	2.29425	2.3382199999999997	2.38219	0.0518406	0.045456	0.176696	0.149888
chr11	63870171	63870270	4801183	0	+	0.454545	(0.44,0.476]	chr11	445045	4	INTRON	INTRON	MARK2	ENSG00000072518.22	ENST00000377810.8:ENST00000361128.9:ENST00000508192.5:ENST00000350490.11:ENST00000402010.8:ENST00000502399.7:ENST00000425897.3:ENST00000679216.1:ENST00000513765.7:ENST00000543220.5:ENST00000543674.1:ENST00000540169.5	protein_coding	protein_coding	protein_coding	protein_coding	2	30	2	2.29425	2.3382199999999997	2.38219	0.0518406	0.045456	0.176696	0.149888
chr16	28729038	28729138	6334095	0	+	0.45	(0.44,0.476]	chr16	606463	14	INTRON	INTRON	EIF3C	ENSG00000184110.15	ENST00000566501.5:ENST00000395587.5:ENST00000331666.11:ENST00000564243.5:ENST00000566866.5:ENST00000565932.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	30	2	2.29425	2.3382199999999997	2.38219	0.0518406	0.045456	0.176696	0.149888
chr2	37106873	37106973	1095888	0	-	0.46	(0.44,0.476]	chr2	117443	78	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	EIF2AK2	ENSG00000055332.19	ENST00000681329.1:ENST00000681507.1:ENST00000681463.1:ENST00000679507.1:ENST00000233057.9:ENST00000679979.1:ENST00000680273.1:ENST00000681516.1:ENST00000647926.1:ENST00000395127.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	30	2	2.29425	2.3382199999999997	2.38219	0.0518406	0.045456	0.176696	0.149888
chr2	159574742	159574842	1252117	0	-	0.47	(0.44,0.476]	chr2	132736	185	INTRON	INTRON	BAZ2B	ENSG00000123636.19	ENST00000392782.5:ENST00000392783.7:ENST00000541068.6:ENST00000437839.5:ENST00000483316.1:ENST00000552327.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	30	2	2.29425	2.3382199999999997	2.38219	0.0518406	0.045456	0.176696	0.149888
chr21	36045839	36045925	7458572	0	-	0.453488	(0.44,0.476]	chr21	759990	4	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SETD4	ENSG00000185917.14	ENST00000399212.5:ENST00000332131.9:ENST00000481477.5:ENST00000399215.5:ENST00000399201.5:ENST00000399208.6:ENST00000399205.5:ENST00000399207.5:ENST00000424303.5:ENST00000429161.5:ENST00000485865.1:ENST00000446166.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	30	2	2.29425	2.3382199999999997	2.38219	0.0518406	0.045456	0.176696	0.149888
chr3	197883864	197883964	1598676	0	+	0.47	(0.44,0.476]	chr3	165690	3	UTR3	UTR3:EXON_MRNA	LRCH3	ENSG00000186001.14	ENST00000438796.6:ENST00000425562.7:ENST00000433298.5	protein_coding	protein_coding	protein_coding	protein_coding	2	30	2	2.29425	2.3382199999999997	2.38219	0.0518406	0.045456	0.176696	0.149888
chr5	134673058	134673154	2489654	0	+	0.458333	(0.44,0.476]	chr5	237736	8	INTRON	INTRON	SEC24A	ENSG00000113615.13	ENST00000398844.7:ENST00000322887.8	protein_coding	protein_coding	protein_coding	protein_coding	2	30	2	2.29425	2.3382199999999997	2.38219	0.0518406	0.045456	0.176696	0.149888
chr6	15021420	15021520	3063146	0	-	0.46	(0.44,0.476]	chr6	284654	2	SS5_PROX	SS5_PROX:INTRON	ENSG00000234261	ENSG00000234261.5	ENST00000629853.2:ENST00000653525.1:ENST00000656468.1:ENST00000656344.1:ENST00000437648.1	lncRNA	lncRNA	lncRNA	lncRNA	2	30	2	2.29425	2.3382199999999997	2.38219	0.0518406	0.045456	0.176696	0.149888
chr6	136623879	136623978	3233940	0	-	0.464646	(0.44,0.476]	chr6	300622	5	INTRON	INTRON	MAP3K5	ENSG00000197442.10	ENST00000359015.5	protein_coding	protein_coding	protein_coding	protein_coding	2	30	2	2.29425	2.3382199999999997	2.38219	0.0518406	0.045456	0.176696	0.149888
chr9	97565647	97565747	4172236	0	+	0.45	(0.44,0.476]	chr9	380107	4	SS3_PROX	SS3_PROX:INTRON	TMOD1	ENSG00000136842.14	ENST00000395211.6:ENST00000259365.9:ENST00000375175.1	protein_coding	protein_coding	protein_coding	protein_coding	2	30	2	2.29425	2.3382199999999997	2.38219	0.0518406	0.045456	0.176696	0.149888
chr20	41466135	41466234	7342999	0	-	0.474747	(0.44,0.476]	chr20	748467	43	INTRON	INTRON	CHD6	ENSG00000124177.16	ENST00000373233.8:ENST00000440697.5	protein_coding	protein_coding	protein_coding	protein_coding	9	108	2	1.95383	2.338195	2.72256	0.00489311	0.00111786	0.0641889	0.0306954
chr2	97517242	97517342	1183495	0	-	0.28	[0,0.28]	chr2	126902	9	INTRON	INTRON	ANKRD36B	ENSG00000196912.13	ENST00000359901.9:ENST00000258459.12	protein_coding	protein_coding	protein_coding	protein_coding	5	95	2	1.91746	2.338165	2.75887	0.0323084	0.00360252	0.132921	0.0552588
chr1	174435182	174435282	259882	0	+	0.47	(0.44,0.476]	chr1	30818	407	INTRON	INTRON	RABGAP1L	ENSG00000152061.24	ENST00000357444.10:ENST00000251507.8:ENST00000681986.1:ENST00000367690.5:ENST00000526253.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	58	2	1.93084	2.3381499999999997	2.74546	0.0443175	0.00326603	0.162302	0.0508595
chr2	62303535	62303635	790362	0	+	0.46	(0.44,0.476]	chr2	88708	57	INTRON	INTRON	ENSG00000228541	ENSG00000228541.2	ENST00000688476.1:ENST00000689590.1:ENST00000687402.1:ENST00000687773.1	lncRNA	lncRNA	lncRNA	lncRNA	4	58	2	1.93084	2.3381499999999997	2.74546	0.0443175	0.00326603	0.162302	0.0508595
chr10	125132215	125132315	4714056	0	-	0.35	(0.32,0.35]	chr10	434919	90	INTRON	INTRON	CTBP2	ENSG00000175029.17	ENST00000337195.9:ENST00000411419.6:ENST00000494626.6:ENST00000531469.5:ENST00000460976.5:ENST00000476817.1:ENST00000530884.1:ENST00000530930.1:ENST00000467395.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	64	2	1.88909	2.338075	2.78706	0.0553737	0.00253645	0.165463	0.0465056
chr18	9938062	9938162	6873590	0	+	0.44	(0.408,0.44]	chr18	680892	6	INTRON	INTRON	VAPA	ENSG00000101558.14	ENST00000400000.7:ENST00000340541.4:ENST00000584796.5:ENST00000583879.5:ENST00000583475.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	23	284	2	2.10623	2.33803	2.56983	7.6675e-4	2.9388e-5	0.0254061	0.00430914
chr19	58249708	58249808	7106738	0	+	0.45	(0.44,0.476]	chr19	713338	22	INTRON	INTRON	ZNF544	ENSG00000198131.15	ENST00000599227.5:ENST00000687789.1:ENST00000594384.5:ENST00000652201.1:ENST00000596825.5:ENST00000596929.5:ENST00000596677.5:ENST00000600220.5:ENST00000600044.5:ENST00000596652.5:ENST00000599953.1:ENST00000598880.5:ENST00000595981.5:ENST00000627781.2:ENST00000269829.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	48	2	1.87325	2.338	2.80275	0.0265709	0.0146513	0.134088	0.0982604
chr7	128747641	128747730	3408459	0	+	0.41573	(0.408,0.44]	chr7	318425	2	UTR5	UTR5:EXON_MRNA:INTRON	CALU	ENSG00000128595.17	ENST00000535011.6:ENST00000542996.6:ENST00000249364.9:ENST00000449187.6:ENST00000479257.5	protein_coding	protein_coding	protein_coding	protein_coding	16	186	2	1.8775	2.337965	2.79843	0.00199614	1.60788e-4	0.0412555	0.0116076
chr2	241335774	241335842	1053820	0	+	0.397059	(0.378,0.408]	chr2	112230	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SEPTIN2	ENSG00000168385.18	ENST00000391973.6:ENST00000428282.5:ENST00000492978.5:ENST00000360051.7:ENST00000407017.5:ENST00000469434.5:ENST00000616972.4:ENST00000495463.5:ENST00000475474.5:ENST00000401990.5:ENST00000469175.5:ENST00000407971.5:ENST00000457335.5:ENST00000436795.5:ENST00000494824.5:ENST00000411484.5:ENST00000462147.5:ENST00000434955.5:ENST00000466211.5:ENST00000391971.7:ENST00000402092.6:ENST00000473479.5:ENST00000464128.5:ENST00000467971.5:ENST00000425899.5:ENST00000443492.5:ENST00000437066.5:ENST00000475823.5:ENST00000449239.5:ENST00000366210.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	56	2	2.21238	2.3379149999999997	2.46345	0.0218124	0.00827342	0.11491	0.0813266
chr10	78038568	78038664	4475928	0	+	0.333333	(0.32,0.35]	chr10	411990	7	EXON_MRNA	EXON_MRNA:INTRON	RPS24	ENSG00000138326.21	ENST00000613865.5:ENST00000435275.5:ENST00000645440.1:ENST00000440692.6:ENST00000360830.9:ENST00000372360.9:ENST00000464716.6:ENST00000645698.1:ENST00000476545.6:ENST00000465692.2:ENST00000482069.5:ENST00000645195.1:ENST00000480662.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	19	228	2	1.71232	2.337905	2.96349	0.00336093	2.09266e-4	0.0532154	0.0131276
chr22	19398886	19398986	7554092	0	-	0.49	(0.476,0.515]	chr22	772292	4	INTRON	INTRON	HIRA:C22orf39	ENSG00000100084.14:ENSG00000242259.9	ENST00000263208.5:ENST00000340170.8:ENST00000509549.5:ENST00000464189.5:ENST00000452818.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	11	137	2	2.24144	2.3378949999999996	2.43435	0.00122866	9.94276e-4	0.0325799	0.0288906
chr1	225923323	225923417	646271	0	-	0.446809	(0.44,0.476]	chr1	76564	11	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	PYCR2	ENSG00000143811.20	ENST00000612039.4:ENST00000478402.5:ENST00000343818.11:ENST00000489681.5:ENST00000472798.2:ENST00000467298.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	25	304	2	2.04781	2.33787	2.62793	7.64225e-4	1.97258e-5	0.0253443	0.00342281
chr20	5588457	5588556	7312116	0	-	0.454545	(0.44,0.476]	chr20	744600	18	INTRON	INTRON	GPCPD1	ENSG00000125772.14	ENST00000379019.7:ENST00000481690.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	14	179	2	1.82207	2.33787	2.85367	0.00778322	1.89941e-5	0.0758775	0.00333235
chr1	92330614	92330713	161694	0	+	0.484848	(0.476,0.515]	chr1	17479	59	INTRON	INTRON	RPAP2	ENSG00000122484.9	ENST00000610020.2	protein_coding	protein_coding	protein_coding	protein_coding	3	40	2	1.79693	2.33786	2.87879	0.0649782	0.00999149	0.179417	0.0879541
chr14	73438543	73438643	5919107	0	-	0.52	(0.515,0.57]	chr14	562258	281	INTRON	INTRON	NUMB	ENSG00000133961.21	ENST00000554546.5:ENST00000555238.6:ENST00000557597.5:ENST00000356296.8:ENST00000555394.5:ENST00000554394.5:ENST00000555307.5:ENST00000554315.5:ENST00000555987.5:ENST00000556112.5:ENST00000557774.5:ENST00000554818.5:ENST00000557031.5:ENST00000556600.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	35	2	2.01737	2.3378550000000002	2.65834	0.0352218	0.0187418	0.137535	0.117523
chr8	27332679	27332779	3719856	0	+	0.52	(0.515,0.57]	chr8	345640	54	INTRON	INTRON	PTK2B	ENSG00000120899.18	ENST00000397501.5:ENST00000522338.5:ENST00000521164.5:ENST00000346049.10:ENST00000420218.3:ENST00000522517.5	protein_coding	protein_coding	protein_coding	protein_coding	3	35	2	2.01737	2.3378550000000002	2.65834	0.0352218	0.0187418	0.137535	0.117523
chr2	110660436	110660536	1206682	0	-	0.29	(0.28,0.32]	chr2	128687	4	SS3_PROX	SS3_PROX:INTRON	BUB1	ENSG00000169679.15	ENST00000302759.11:ENST00000535254.6:ENST00000409311.5:ENST00000466333.5:ENST00000666956.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	83	2	2.25939	2.33782	2.41625	0.021772	0.00419958	0.11491	0.0592209
chr15	22524380	22524480	5974812	0	+	0.4	(0.378,0.408]	chr15	568084	70	INTRON	INTRON	HERC2P2	ENSG00000276550.5	ENST00000613386.4:ENST00000619021.4	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	4	50	2	1.94559	2.33776	2.72993	0.0211434	0.0188736	0.122929	0.108861
chr4	98927309	98927408	2208505	0	-	0.383838	(0.378,0.408]	chr4	216188	4	INTRON	INTRON	EIF4E	ENSG00000151247.13	ENST00000450253.7:ENST00000280892.10:ENST00000515638.5:ENST00000504432.5:ENST00000511644.5:ENST00000505992.1:ENST00000507665.5:ENST00000504472.1:ENST00000418385.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	50	2	1.94559	2.33776	2.72993	0.0211434	0.0188736	0.122929	0.108861
chr6	140166283	140166383	2968118	0	+	0.38	(0.378,0.408]	chr6	279015	172	INTRON	INTRON	ENSG00000288714	ENSG00000288714.1	ENST00000683950.1	lncRNA	lncRNA	lncRNA	lncRNA	4	50	2	1.94559	2.33776	2.72993	0.0211434	0.0188736	0.122929	0.108861
chr17	82545363	82545463	6692861	0	+	0.36	(0.35,0.378]	chr17	654627	247	INTRON	INTRON	FOXK2	ENSG00000141568.21	ENST00000473637.6:ENST00000335255.10:ENST00000527313.6:ENST00000570585.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	53	2	1.5118	2.337755	3.16371	0.0789277	0.00383956	0.198963	0.0562562
chr2	199270467	199270564	1307360	0	-	0.350515	(0.35,0.378]	chr2	136827	11	UTR3	UTR3:EXON_MRNA	SATB2	ENSG00000119042.17	ENST00000614512.4:ENST00000417098.6:ENST00000260926.9:ENST00000443023.5	protein_coding	protein_coding	protein_coding	protein_coding	4	53	2	1.5118	2.337755	3.16371	0.0789277	0.00383956	0.198963	0.0562562
chr20	50909299	50909399	7355656	0	-	0.36	(0.35,0.378]	chr20	750096	4	SS5_PROX	SS5_PROX:INTRON	ADNP	ENSG00000101126.18	ENST00000621696.5:ENST00000673732.1:ENST00000396029.8:ENST00000644386.1:ENST00000396032.8:ENST00000349014.8:ENST00000645081.1:ENST00000642364.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	178	2	2.17098	2.337755	2.50453	0.00194964	3.275e-4	0.0400465	0.0160995
chr1	236808773	236808873	342632	0	+	0.41	(0.408,0.44]	chr1	39827	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	MTR	ENSG00000116984.15	ENST00000680454.1:ENST00000366577.10:ENST00000674797.2:ENST00000652435.1:ENST00000679569.1:ENST00000650888.1:ENST00000463959.1:ENST00000535889.6:ENST00000651455.1:ENST00000681102.1:ENST00000679842.1:ENST00000681177.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	62	2	1.66945	2.3377	3.00595	0.0218479	0.00781452	0.123836	0.0759016
chr22	21689322	21689417	7482701	0	+	0.473684	(0.44,0.476]	chr22	763393	6	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	PPIL2	ENSG00000100023.20	ENST00000679795.1:ENST00000679540.1:ENST00000679580.1:ENST00000681286.1:ENST00000680061.1:ENST00000681338.1:ENST00000681956.1:ENST00000679827.1:ENST00000679534.1:ENST00000679479.1:ENST00000680393.1:ENST00000680463.1:ENST00000680426.1:ENST00000335025.12:ENST00000498109.2:ENST00000496819.2:ENST00000398831.8:ENST00000681394.1:ENST00000679477.1:ENST00000626352.2:ENST00000417788.5:ENST00000681791.1:ENST00000679692.1:ENST00000680962.1:ENST00000679857.1:ENST00000680094.1:ENST00000680434.1:ENST00000680109.1:ENST00000406385.1:ENST00000681137.1:ENST00000680860.1:ENST00000680183.1:ENST00000446951.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	116	2	2.02421	2.33766	2.65111	0.00536295	6.64549e-4	0.0663076	0.0234958
chr22	20637210	20637310	7557905	0	-	0.5	(0.476,0.515]	chr22	772926	90	INTRON	INTRON	SMPD4P1	ENSG00000223553.6	ENST00000443839.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	3	42	2	2.13854	2.337625	2.53671	0.0776563	0.00624027	0.196285	0.0718843
chr12	111893658	111893758	5229264	0	+	0.32	(0.28,0.32]	chr12	495712	7	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	MAPKAPK5	ENSG00000089022.14	ENST00000550735.7:ENST00000547915.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	53	2	2.14002	2.33762	2.53522	0.0310424	0.0304107	0.143457	0.130461
chr6	147243459	147243559	2989100	0	+	0.31	(0.28,0.32]	chr6	280013	38	INTRON	INTRON	STXBP5	ENSG00000164506.15	ENST00000321680.11:ENST00000367481.7:ENST00000546097.5:ENST00000367480.7	protein_coding	protein_coding	protein_coding	protein_coding	6	100	2	2.25881	2.33753	2.41625	0.009974	0.00419958	0.0842795	0.0592209
chr1	27477494	27477594	406638	0	-	0.38	(0.378,0.408]	chr1	48986	482	INTRON	INTRON	WASF2	ENSG00000158195.11	ENST00000618852.5:ENST00000536657.1	protein_coding	protein_coding	protein_coding	protein_coding	4	50	2	1.72045	2.33752	2.95459	0.0424671	0.00957623	0.161763	0.0820838
chr17	37350153	37350252	6762483	0	-	0.393939	(0.378,0.408]	chr17	664970	44	INTRON	INTRON	ACACA	ENSG00000278540.5	ENST00000616317.5:ENST00000614428.4:ENST00000613146.4:ENST00000615229.4:ENST00000621960.1:ENST00000617548.1:ENST00000616352.4:ENST00000614789.4:ENST00000612007.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:non_stop_decay:nonsense_mediated_decay	4	50	2	1.72045	2.33752	2.95459	0.0424671	0.00957623	0.161763	0.0820838
chr11	65443542	65443642	4805978	0	+	0.58	(0.57,1]	chr11	446554	209	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	57	334	2	2.1805	2.33745	2.4944	5.7646e-6	2.70756e-6	0.001677	0.0011630500000000001
chr9	41373847	41373947	4125943	0	+	0.27	[0,0.28]	chr9	376044	143	INTRON	INTRON	ENSG00000288891	ENSG00000288891.1	ENST00000692789.1:ENST00000686353.1	lncRNA	lncRNA	lncRNA	lncRNA	3	59	2	1.98291	2.33739	2.69187	0.0494143	0.0221271	0.156195	0.123903
chr7	119846339	119846438	3629804	0	-	0.30303	(0.28,0.32]	chr7	337335	451	INTRON	INTRON	LINC02476	ENSG00000225546.6	ENST00000660268.1:ENST00000431071.5:ENST00000426413.2	lncRNA	lncRNA	lncRNA	lncRNA	9	98	2	1.3062	2.3373749999999998	3.36855	0.0434142	0.00305882	0.162255	0.0494118
chr7	139364807	139364907	3437637	0	+	0.31	(0.28,0.32]	chr7	320318	41	INTRON	INTRON	LUC7L2:FMC1-LUC7L2	ENSG00000146963.18:ENSG00000269955.2	ENST00000541170.7:ENST00000541515.3:ENST00000608368.5:ENST00000619796.4:ENST00000354926.9:ENST00000435096.1:ENST00000456182.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	115	2	1.87915	2.33728	2.79541	0.00813561	0.00376367	0.0810802	0.0539127
chr16	54922950	54923049	6488472	0	-	0.474747	(0.44,0.476]	chr16	627574	66	EXON_LNCRNA	EXON_LNCRNA:INTRON	CRNDE	ENSG00000245694.11	ENST00000613942.2:ENST00000661493.1:ENST00000668556.1:ENST00000660344.1:ENST00000502066.7:ENST00000559598.7:ENST00000688921.1:ENST00000501177.9:ENST00000661312.1:ENST00000689582.1:ENST00000558031.7:ENST00000689375.1:ENST00000691307.1:ENST00000657142.1:ENST00000557792.2:ENST00000559432.6:ENST00000655114.1:ENST00000560912.6:ENST00000558952.2	lncRNA	lncRNA	lncRNA	lncRNA	9	113	2	1.28061	2.337275	3.39394	0.0639824	1.86601e-5	0.177882	0.00329969
chr7	121048491	121048591	3394237	0	+	0.36	(0.35,0.378]	chr7	317688	11	INTRON	INTRON	CPED1	ENSG00000106034.18	ENST00000340646.9:ENST00000310396.10:ENST00000428526.5:ENST00000495036.5:ENST00000450913.6:ENST00000520801.5:ENST00000521774.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	21	276	2	2.28138	2.3372599999999997	2.39314	4.91443e-4	1.55829e-4	0.0205704	0.0106835
chr1	171794927	171795027	254481	0	+	0.42	(0.408,0.44]	chr1	30335	4	SS5_PROX	SS5_PROX:INTRON	METTL13	ENSG00000010165.20	ENST00000361735.4:ENST00000362019.7:ENST00000367737.9:ENST00000466643.1:ENST00000476386.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	30	2	2.27698	2.33724	2.3975	0.0583528	0.040266	0.167723	0.161534
chr15	25385453	25385553	6121290	0	-	0.42	(0.408,0.44]	chr15	582883	93	INTRON	INTRON	UBE3A	ENSG00000114062.22	ENST00000648336.2:ENST00000438097.6:ENST00000635914.1:ENST00000638155.1:ENST00000637886.1:ENST00000638011.1:ENST00000649550.1:ENST00000650110.1:ENST00000630424.2:ENST00000566215.5:ENST00000428984.6:ENST00000675177.1:ENST00000675593.1:ENST00000625778.3:ENST00000675000.1:ENST00000626068.2:ENST00000626793.2:ENST00000628733.2:ENST00000630907.2:ENST00000675038.1:ENST00000630607.2:ENST00000629886.2:ENST00000628267.2:ENST00000629252.2:ENST00000628890.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	30	2	2.27698	2.33724	2.3975	0.0583528	0.040266	0.167723	0.161534
chr15	43101951	43102051	6160656	0	-	0.44	(0.408,0.44]	chr15	586591	95	INTRON	INTRON	UBR1	ENSG00000159459.12	ENST00000290650.9:ENST00000546274.6:ENST00000563239.1:ENST00000569337.1:ENST00000627960.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	30	2	2.27698	2.33724	2.3975	0.0583528	0.040266	0.167723	0.161534
chr16	28210673	28210769	6468454	0	-	0.4375	(0.408,0.44]	chr16	624603	12	INTRON	INTRON	XPO6	ENSG00000169180.12	ENST00000304658.10:ENST00000565698.5:ENST00000569951.1:ENST00000566073.1	protein_coding	protein_coding	protein_coding	protein_coding	2	30	2	2.27698	2.33724	2.3975	0.0583528	0.040266	0.167723	0.161534
chr2	32219712	32219812	730333	0	+	0.42	(0.408,0.44]	chr2	84227	1	SS3_PROX	SS3_PROX:INTRON	SLC30A6	ENSG00000152683.14	ENST00000357055.7:ENST00000435660.5:ENST00000282587.9:ENST00000449777.5:ENST00000454324.5:ENST00000379343.6:ENST00000406369.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	30	2	2.27698	2.33724	2.3975	0.0583528	0.040266	0.167723	0.161534
chr20	37031568	37031667	7338905	0	-	0.424242	(0.408,0.44]	chr20	747844	84	INTRON	INTRON	RBL1	ENSG00000080839.12	ENST00000373664.8:ENST00000344359.7	protein_coding	protein_coding	protein_coding	protein_coding	2	30	2	2.27698	2.33724	2.3975	0.0583528	0.040266	0.167723	0.161534
chr21	33336740	33336839	7396404	0	+	0.434343	(0.408,0.44]	chr21	753384	7	INTRON	INTRON	IFNAR1	ENSG00000142166.13	ENST00000652450.1:ENST00000652654.1:ENST00000270139.8:ENST00000442071.2:ENST00000652513.1:ENST00000652601.1:ENST00000651609.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	30	2	2.27698	2.33724	2.3975	0.0583528	0.040266	0.167723	0.161534
chr22	36470699	36470797	7585510	0	-	0.418367	(0.408,0.44]	chr22	776258	16	INTRON	INTRON	TXN2	ENSG00000100348.10	ENST00000216185.7:ENST00000416967.1:ENST00000487725.1:ENST00000403313.5:ENST00000411915.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	30	2	2.27698	2.33724	2.3975	0.0583528	0.040266	0.167723	0.161534
chr5	54368868	54368968	2354311	0	+	0.43	(0.408,0.44]	chr5	227061	282	INTRON	INTRON	LINC01033	ENSG00000249069.8	ENST00000665899.1:ENST00000653566.1:ENST00000655801.1:ENST00000654906.1:ENST00000667636.1:ENST00000665869.1:ENST00000664079.1:ENST00000659703.1:ENST00000662351.1:ENST00000523194.7:ENST00000665795.1:ENST00000667992.1:ENST00000662022.1:ENST00000657771.1:ENST00000517934.1	lncRNA	lncRNA	lncRNA	lncRNA	2	30	2	2.27698	2.33724	2.3975	0.0583528	0.040266	0.167723	0.161534
chr6	20603932	20604032	2829080	0	+	0.44	(0.408,0.44]	chr6	265649	444	INTRON	INTRON	CDKAL1	ENSG00000145996.11	ENST00000274695.8:ENST00000378610.1	protein_coding	protein_coding	protein_coding	protein_coding	2	30	2	2.27698	2.33724	2.3975	0.0583528	0.040266	0.167723	0.161534
chr7	152763420	152763520	3450555	0	+	0.44	(0.408,0.44]	chr7	322519	31	INTRON	INTRON	ACTR3B	ENSG00000133627.18	ENST00000377776.7:ENST00000256001.13:ENST00000397282.2	protein_coding	protein_coding	protein_coding	protein_coding	2	30	2	2.27698	2.33724	2.3975	0.0583528	0.040266	0.167723	0.161534
chrX	120076376	120076445	7874774	0	-	0.42029	(0.408,0.44]	chrX	802022	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RHOXF2B	ENSG00000203989.5	ENST00000371402.5	protein_coding	protein_coding	protein_coding	protein_coding	2	30	2	2.27698	2.33724	2.3975	0.0583528	0.040266	0.167723	0.161534
chr1	246169856	246169956	677331	0	-	0.39	(0.378,0.408]	chr1	79721	736	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000391836.3:ENST00000453676.5:ENST00000462422.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	17	217	2	2.05143	2.337195	2.62296	0.0015563	9.08622e-5	0.0359655	0.00797763
chr19	15389149	15389249	7147814	0	-	0.47	(0.44,0.476]	chr19	722074	67	INTRON	INTRON	AKAP8L	ENSG00000011243.19	ENST00000594594.6:ENST00000679638.1:ENST00000595465.6:ENST00000599137.6:ENST00000397410.10:ENST00000609519.5:ENST00000593845.5:ENST00000680649.1:ENST00000596213.6:ENST00000681170.1:ENST00000680703.1:ENST00000680017.1:ENST00000595879.6:ENST00000680303.1:ENST00000679634.1:ENST00000681744.1:ENST00000680803.1:ENST00000681459.1:ENST00000680323.1:ENST00000680774.1:ENST00000680302.1:ENST00000680103.1:ENST00000680642.1:ENST00000681405.1:ENST00000680957.1:ENST00000680865.1:ENST00000680363.1:ENST00000595087.6:ENST00000600065.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	49	2	1.71574	2.33717	2.9586	0.045256	0.00758318	0.149888	0.0773151
chr2	131280679	131280778	866188	0	+	0.444444	(0.44,0.476]	chr2	97282	9	INTRON	INTRON	PLEKHB2:FAR2P4	ENSG00000115762.17:ENSG00000231431.7	ENST00000404460.5:ENST00000560285.5	protein_coding	protein_coding	protein_coding:transcribed_unprocessed_pseudogene	protein_coding:processed_transcript	4	49	2	1.71574	2.33717	2.9586	0.045256	0.00758318	0.149888	0.0773151
chr4	2491396	2491495	1912050	0	+	0.393939	(0.378,0.408]	chr4	191927	5	INTRON	INTRON	RNF4	ENSG00000063978.16	ENST00000503659.5:ENST00000504224.5:ENST00000541204.5:ENST00000502316.5:ENST00000509388.5:ENST00000507247.5:ENST00000314289.13:ENST00000511843.5:ENST00000509258.5:ENST00000513284.5:ENST00000507784.5:ENST00000513578.5:ENST00000511859.5:ENST00000511892.5:ENST00000513643.5:ENST00000503123.5:ENST00000509206.1:ENST00000506706.5:ENST00000511600.5:ENST00000513450.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	42	2	1.88729	2.33717	2.78705	0.0532327	0.0135539	0.162538	0.101363
chr6	157410651	157410751	3011837	0	+	0.38	(0.378,0.408]	chr6	281268	280	INTRON	INTRON	ZDHHC14	ENSG00000175048.17	ENST00000414563.6:ENST00000359775.10	protein_coding	protein_coding	protein_coding	protein_coding	3	42	2	1.88729	2.33717	2.78705	0.0532327	0.0135539	0.162538	0.101363
chr7	107472222	107472322	3612107	0	-	0.33	(0.32,0.35]	chr7	336694	592	INTRON	INTRON	COG5	ENSG00000164597.15	ENST00000297135.9:ENST00000347053.8:ENST00000393603.7:ENST00000484237.5:ENST00000475638.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	56	2	1.72898	2.33704	2.9451	0.0425433	0.011051	0.161951	0.0873897
chr8	140983341	140983441	4079898	0	-	0.33	(0.32,0.35]	chr8	370583	1	SS5_PROX	SS5_PROX:INTRON	PTK2	ENSG00000169398.20	ENST00000696786.1:ENST00000522684.5:ENST00000395218.3:ENST00000521059.5:ENST00000519993.5:ENST00000340930.7:ENST00000524357.5:ENST00000521791.5:ENST00000523067.5:ENST00000520828.5:ENST00000519881.5:ENST00000520892.5:ENST00000523803.5:ENST00000521907.5:ENST00000517453.5:ENST00000520045.5:ENST00000521332.5:ENST00000524040.5:ENST00000523679.1:ENST00000524257.5:ENST00000523797.1:ENST00000519635.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	56	2	1.72898	2.33704	2.9451	0.0425433	0.011051	0.161951	0.0873897
chr2	27592285	27592385	718026	0	+	0.38	(0.378,0.408]	chr2	83352	82	INTRON	INTRON	ZNF512	ENSG00000243943.10	ENST00000413371.6:ENST00000416005.6:ENST00000556601.5:ENST00000379717.5:ENST00000355467.6:ENST00000494548.1:ENST00000461705.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	9	113	2	1.77299	2.337005	2.90102	0.0129546	3.47934e-4	0.0931124	0.0166215
chr7	100329659	100329751	3586709	0	-	0.380435	(0.378,0.408]	chr7	334346	10	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PMS2P1	ENSG00000078319.11	ENST00000685724.1:ENST00000692351.1:ENST00000685541.1:ENST00000676200.2:ENST00000675162.2:ENST00000686838.1:ENST00000676241.1:ENST00000674981.1:ENST00000691424.1:ENST00000689817.1:ENST00000675610.2:ENST00000685901.1:ENST00000687177.1:ENST00000686797.1:ENST00000686203.1:ENST00000687616.1:ENST00000689267.1:ENST00000691905.1:ENST00000688544.1:ENST00000692261.1:ENST00000693192.1:ENST00000693215.1:ENST00000691707.1:ENST00000691275.1:ENST00000692687.1:ENST00000689609.1:ENST00000685852.1:ENST00000691910.1:ENST00000676204.1:ENST00000689000.1:ENST00000693042.1:ENST00000690446.1:ENST00000676274.2:ENST00000685473.1:ENST00000693010.1:ENST00000687801.1:ENST00000689447.1:ENST00000674842.2:ENST00000688104.1:ENST00000686890.1:ENST00000675639.2:ENST00000693302.1:ENST00000676155.2:ENST00000691428.1:ENST00000691046.1:ENST00000691816.1:ENST00000685670.1:ENST00000693490.1:ENST00000685700.1:ENST00000692947.1:ENST00000689907.1:ENST00000691110.1:ENST00000685499.1:ENST00000689019.1:ENST00000689719.1:ENST00000690988.1:ENST00000676256.1:ENST00000687713.1:ENST00000691247.1:ENST00000685805.1:ENST00000685342.1:ENST00000691107.1:ENST00000674972.2:ENST00000431037.4:ENST00000686569.1:ENST00000692675.1:ENST00000686594.1:ENST00000692231.1:ENST00000690914.1:ENST00000685607.1:ENST00000687053.1:ENST00000689538.1:ENST00000691660.1:ENST00000675620.2:ENST00000687026.1:ENST00000692752.1:ENST00000675640.2:ENST00000686825.1:ENST00000691842.1:ENST00000676269.2:ENST00000676109.1:ENST00000675486.2:ENST00000693338.1:ENST00000690455.1:ENST00000688879.1:ENST00000692066.1:ENST00000674747.1:ENST00000692106.1:ENST00000691365.1	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript:transcribed_unprocessed_pseudogene	6	81	2	2.13797	2.336995	2.53602	0.0124882	0.0020933	0.0923444	0.0424943
chr1	28756057	28756157	58539	0	+	0.39	(0.378,0.408]	chr1	7605	117	INTRON	INTRON	YTHDF2	ENSG00000198492.16	ENST00000542507.5:ENST00000373812.8:ENST00000541996.5:ENST00000478283.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	31	2	2.30961	2.336945	2.36428	0.055088	0.0441088	0.165463	0.162255
chr1	167652597	167652697	247184	0	+	0.4	(0.378,0.408]	chr1	29437	107	INTRON	INTRON	RCSD1	ENSG00000198771.11	ENST00000537350.5:ENST00000361496.3:ENST00000367854.8:ENST00000472038.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	31	2	2.30961	2.336945	2.36428	0.055088	0.0441088	0.165463	0.162255
chr19	47630989	47631089	7085981	0	+	0.38	(0.378,0.408]	chr19	709045	230	INTRON	INTRON	ENSG00000268746	ENSG00000268746.1	ENST00000599924.1	lncRNA	lncRNA	lncRNA	lncRNA	2	31	2	2.30961	2.336945	2.36428	0.055088	0.0441088	0.165463	0.162255
chr3	33614945	33615044	1652959	0	-	0.393939	(0.378,0.408]	chr3	169611	25	INTRON	INTRON	CLASP2	ENSG00000163539.18	ENST00000399362.8:ENST00000682230.1:ENST00000468888.6:ENST00000359576.9:ENST00000650653.1:ENST00000480013.6:ENST00000461133.8:ENST00000635664.1:ENST00000313350.10:ENST00000487200.5:ENST00000333778.10:ENST00000485378.6	protein_coding	protein_coding	protein_coding	protein_coding	2	31	2	2.30961	2.336945	2.36428	0.055088	0.0441088	0.165463	0.162255
chr5	37029206	37029306	2339992	0	+	0.39	(0.378,0.408]	chr5	226122	14	INTRON	INTRON	NIPBL	ENSG00000164190.19	ENST00000282516.13:ENST00000448238.2:ENST00000652901.1	protein_coding	protein_coding	protein_coding	protein_coding	2	31	2	2.30961	2.336945	2.36428	0.055088	0.0441088	0.165463	0.162255
chr7	99120767	99120867	3582911	0	-	0.38	(0.378,0.408]	chr7	333704	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SMURF1	ENSG00000198742.10	ENST00000361368.7:ENST00000361125.1:ENST00000472627.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	31	2	2.30961	2.336945	2.36428	0.055088	0.0441088	0.165463	0.162255
chr11	483367	483466	4719238	0	+	0.474747	(0.44,0.476]	chr11	436026	29	INTRON	INTRON	PTDSS2	ENSG00000174915.12	ENST00000532614.5:ENST00000308020.6:ENST00000531520.5:ENST00000526878.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	70	2	1.41577	2.33689	3.25801	0.042743	0.00248185	0.148082	0.0460771
chr19	7936738	7936836	7130256	0	-	0.540816	(0.515,0.57]	chr19	718334	11	INTRON	INTRON	TIMM44	ENSG00000104980.8	ENST00000270538.8:ENST00000595831.5:ENST00000595876.5:ENST00000597926.1:ENST00000600748.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	36	2	2.21273	2.336885	2.46104	0.032841	0.0196151	0.145164	0.109486
chr16	71925317	71925416	6386926	0	+	0.50505	(0.476,0.515]	chr16	614141	1	INTRON	INTRON	IST1	ENSG00000182149.21	ENST00000544564.5:ENST00000541571.6:ENST00000535424.5:ENST00000606369.5:ENST00000378799.11:ENST00000538565.5:ENST00000329908.12:ENST00000538850.5:ENST00000378798.9:ENST00000439924.6:ENST00000456820.2:ENST00000536027.1:ENST00000541180.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	69	2	1.73024	2.33687	2.9435	0.0127077	0.00929849	0.0985982	0.0817766
chr20	47254817	47254917	7348481	0	-	0.54	(0.515,0.57]	chr20	749282	50	INTRON	INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000467200.6:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000468376.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	49	2	1.68687	2.33682	2.98677	0.0300837	0.00632549	0.129186	0.0722266
chr2	113941094	113941192	854765	0	+	0.377551	(0.35,0.378]	chr2	95937	6	INTRON	INTRON	ACTR3	ENSG00000115091.12	ENST00000263238.7:ENST00000446821.5:ENST00000535589.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	44	2	1.87717	2.3368	2.79643	0.0555068	0.013543	0.165463	0.101363
chr3	43716695	43716790	1410442	0	+	0.389474	(0.378,0.408]	chr3	147956	13	INTRON	INTRON	ABHD5	ENSG00000011198.10	ENST00000643520.1:ENST00000458276.7:ENST00000649763.1:ENST00000643140.1:ENST00000643500.1:ENST00000644371.2:ENST00000646378.1:ENST00000643477.1:ENST00000646799.1:ENST00000454293.2:ENST00000642351.1:ENST00000413300.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	75	2	1.39434	2.33678	3.27922	0.0349817	0.00312717	0.149337	0.0499153
chr3	42218097	42218196	1405729	0	+	0.393939	(0.378,0.408]	chr3	147607	56	INTRON	INTRON	TRAK1	ENSG00000182606.17	ENST00000487159.5:ENST00000672026.1:ENST00000673621.2:ENST00000327628.10:ENST00000396175.5	protein_coding	protein_coding	protein_coding	protein_coding	4	59	2	2.04292	2.336745	2.63057	0.0326035	0.0053733	0.145164	0.0642754
chr19	49800460	49800555	7091188	0	+	0.589474	(0.57,1]	chr19	710389	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	AP2A1	ENSG00000196961.13	ENST00000354293.10:ENST00000359032.9:ENST00000597774.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	40	2	1.62421	2.336635	3.04906	0.0376752	4.97245e-4	0.156361	0.0206993
chr9	135939172	135939272	4372336	0	-	0.34	(0.32,0.35]	chr9	402509	1	SS5_PROX	SS5_PROX:INTRON	UBAC1	ENSG00000130560.9	ENST00000371756.4:ENST00000489050.5:ENST00000465873.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	29	419	2	2.19726	2.33662	2.47598	5.06401e-4	4.65915e-5	0.020816	0.00555772
chr3	100292594	100292694	1465890	0	+	0.51	(0.476,0.515]	chr3	153619	15	INTRON	INTRON	TBC1D23	ENSG00000036054.13	ENST00000394144.9:ENST00000344949.9:ENST00000486274.5:ENST00000475134.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	157	2	2.23879	2.33657	2.43435	9.94276e-4	5.83195e-4	0.0288906	0.0219397
chr7	64819349	64819449	3320599	0	+	0.41	(0.408,0.44]	chr7	308722	33	INTRON	INTRON	ZNF138	ENSG00000197008.10	ENST00000359735.7:ENST00000440155.6:ENST00000494380.5:ENST00000307355.12:ENST00000437743.1:ENST00000440598.2:ENST00000430838.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	76	2	2.31565	2.3365400000000003	2.35743	0.0154718	0.00206746	0.100909	0.0421756
chr7	121272328	121272428	3396500	0	+	0.42	(0.408,0.44]	chr7	317818	5	INTRON	INTRON	CPED1	ENSG00000106034.18	ENST00000310396.10	protein_coding	protein_coding	protein_coding	protein_coding	16	188	2	1.82628	2.33643	2.84658	0.00363271	6.92323e-5	0.0535085	0.006896
chr7	44800728	44800821	3315643	0	+	0.397849	(0.378,0.408]	chr7	308135	3	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PPIA	ENSG00000196262.15	ENST00000479021.1:ENST00000468812.6:ENST00000676977.1:ENST00000677107.1:ENST00000355968.10:ENST00000489459.5:ENST00000415933.5:ENST00000620047.5:ENST00000678643.1:ENST00000677521.1:ENST00000678789.1:ENST00000678165.1:ENST00000677022.1:ENST00000678805.1:ENST00000494484.1:ENST00000480603.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	77	2	1.9714	2.336405	2.70141	0.0109363	0.00411614	0.0924799	0.0564981
chr1	51746957	51747057	100701	0	+	0.47	(0.44,0.476]	chr1	13293	2	SS5_PROX	SS5_PROX:INTRON	OSBPL9	ENSG00000117859.19	ENST00000371714.5:ENST00000428468.6:ENST00000447887.5:ENST00000495776.5:ENST00000435274.6:ENST00000453295.5:ENST00000489990.5:ENST00000484890.5:ENST00000532975.5:ENST00000534040.5:ENST00000527631.5:ENST00000531828.5:ENST00000361556.9:ENST00000473207.6:ENST00000533884.5:ENST00000481937.5:ENST00000526917.5:ENST00000462759.5:ENST00000486942.5:ENST00000467064.5:ENST00000524620.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	74	2	2.15726	2.3364000000000003	2.51554	0.00777207	0.00508124	0.0757731	0.0646039
chr3	43707053	43707153	1410341	0	+	0.47	(0.44,0.476]	chr3	147937	41	INTRON	INTRON	ABHD5	ENSG00000011198.10	ENST00000643520.1:ENST00000458276.7:ENST00000649763.1:ENST00000643140.1:ENST00000643500.1:ENST00000644371.2:ENST00000013894.3:ENST00000646378.1:ENST00000643477.1:ENST00000646799.1:ENST00000454293.2:ENST00000642351.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	15	180	2	2.32744	2.3363500000000004	2.34526	0.00170738	1.68228e-4	0.037419	0.0112487
chr22	20944720	20944820	7480791	0	+	0.43	(0.408,0.44]	chr22	763096	101	INTRON	INTRON	CRKL	ENSG00000099942.13	ENST00000354336.8:ENST00000411769.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	109	2	1.65543	2.33629	3.01715	0.0193369	1.77739e-4	0.108861	0.0116289
chr2	69941556	69941655	805778	0	+	0.363636	(0.35,0.378]	chr2	89939	34	UTR3	UTR3:EXON_MRNA:INTRON	MXD1	ENSG00000059728.11	ENST00000540449.5:ENST00000264444.7:ENST00000465446.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	165	2	2.01724	2.336275	2.65531	0.00520179	1.37276e-4	0.0633615	0.0100829
chr11	65975096	65975196	4807552	0	+	0.47	(0.44,0.476]	chr11	447176	69	INTRON	INTRON	SART1	ENSG00000175467.15	ENST00000312397.10	protein_coding	protein_coding	protein_coding	protein_coding	6	74	2	1.92704	2.33625	2.74546	0.0128054	0.00326603	0.0990564	0.0508595
chr11	62643564	62643664	4960343	0	-	0.51	(0.476,0.515]	chr11	466618	31	INTRON	INTRON	GANAB	ENSG00000089597.18	ENST00000346178.8:ENST00000532402.5:ENST00000356638.8:ENST00000540933.5:ENST00000648273.1:ENST00000534779.5:ENST00000534613.5:ENST00000525994.1:ENST00000526210.1:ENST00000526392.1:ENST00000529737.5:ENST00000534419.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	40	2	1.72558	2.3362499999999997	2.94692	0.0767648	0.00794331	0.196164	0.0797304
chr16	67735442	67735542	6504959	0	-	0.49	(0.476,0.515]	chr16	629608	4	SS3_PROX	SS3_PROX:INTRON	RANBP10	ENSG00000141084.12	ENST00000317506.8:ENST00000448631.6:ENST00000602506.5:ENST00000602677.5:ENST00000602525.5:ENST00000602638.5:ENST00000602815.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	40	2	1.72558	2.3362499999999997	2.94692	0.0767648	0.00794331	0.196164	0.0797304
chr19	1838637	1838736	7113733	0	-	0.484848	(0.476,0.515]	chr19	714891	74	INTRON	INTRON	REXO1	ENSG00000079313.15	ENST00000170168.9:ENST00000587524.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	40	2	1.72558	2.3362499999999997	2.94692	0.0767648	0.00794331	0.196164	0.0797304
chr19	34184217	34184317	7050920	0	+	0.5	(0.476,0.515]	chr19	703187	111	INTRON	INTRON	LSM14A	ENSG00000257103.9	ENST00000544216.8:ENST00000589878.5:ENST00000540746.6:ENST00000433627.9:ENST00000586157.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	40	2	1.72558	2.3362499999999997	2.94692	0.0767648	0.00794331	0.196164	0.0797304
chr19	41341382	41341482	7185376	0	-	0.49	(0.476,0.515]	chr19	726885	1	SS5_PROX	SS5_PROX:INTRON	TGFB1	ENSG00000105329.11	ENST00000598758.5:ENST00000221930.6:ENST00000600196.2:ENST00000677934.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	40	2	1.72558	2.3362499999999997	2.94692	0.0767648	0.00794331	0.196164	0.0797304
chr7	4782151	4782251	3270886	0	+	0.48	(0.476,0.515]	chr7	303941	2	SS5_PROX	SS5_PROX:INTRON	AP5Z1	ENSG00000242802.9	ENST00000647984.1:ENST00000649063.2:ENST00000477680.6:ENST00000650451.1:ENST00000650310.1:ENST00000648925.1:ENST00000496303.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	40	2	1.72558	2.3362499999999997	2.94692	0.0767648	0.00794331	0.196164	0.0797304
chr1	246115605	246115705	676788	0	-	0.46	(0.44,0.476]	chr1	79721	193	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000391836.3:ENST00000453676.5:ENST00000462422.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	82	2	1.892	2.33623	2.78046	0.00935701	0.0028389	0.0858596	0.0473151
chr20	4006155	4006255	7309314	0	-	0.48	(0.476,0.515]	chr20	744300	314	INTRON	INTRON	RNF24	ENSG00000101236.17	ENST00000336095.10:ENST00000358395.11:ENST00000545616.2	protein_coding	protein_coding	protein_coding	protein_coding	5	65	2	2.13573	2.33622	2.53671	0.0119549	0.00624027	0.0899583	0.0718843
chr3	32482782	32482880	1649448	0	-	0.459184	(0.44,0.476]	chr3	169078	16	UTR3	UTR3:EXON_MRNA	CMTM6	ENSG00000091317.8	ENST00000205636.4	protein_coding	protein_coding	protein_coding	protein_coding	4	54	2	2.02558	2.336135	2.64669	0.0363567	0.0040295	0.138959	0.0578376
chr2	235542934	235543034	1041826	0	+	0.51	(0.476,0.515]	chr2	111222	180	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1:ENST00000402604.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	96	2	1.642	2.3361349999999996	3.03027	0.0138314	9.53446e-4	0.10247	0.0282335
chr8	99279752	99279852	3813949	0	+	0.48	(0.476,0.515]	chr8	353192	41	INTRON	INTRON	VPS13B	ENSG00000132549.20	ENST00000496144.5:ENST00000683334.1:ENST00000357162.7:ENST00000358544.7:ENST00000683619.1:ENST00000683869.1:ENST00000682153.1:ENST00000682358.1:ENST00000682145.1:ENST00000355155.6:ENST00000682234.1:ENST00000683486.1:ENST00000522802.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	40	2	1.86492	2.336105	2.80729	0.0550347	0.0126008	0.165463	0.0980703
chr8	38113298	38113396	3734750	0	+	0.44898	(0.44,0.476]	chr8	346969	21	INTRON	INTRON	ASH2L	ENSG00000129691.16	ENST00000545394.2:ENST00000343823.11:ENST00000517496.5:ENST00000428278.6:ENST00000521652.5:ENST00000524263.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	40	2	2.21079	2.33607	2.46135	0.0374637	0.0194581	0.140008	0.119831
chr5	115544102	115544183	2707230	0	-	0.506173	(0.476,0.515]	chr5	254766	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	FEM1C	ENSG00000145780.8	ENST00000274457.5	protein_coding	protein_coding	protein_coding	protein_coding	7	82	2	2.0107	2.33591	2.66112	0.00572098	0.0044598	0.0681402	0.0592169
chr16	16524909	16525009	6311111	0	+	0.5	(0.476,0.515]	chr16	604098	249	INTRON	INTRON	ENSG00000260126	ENSG00000260126.2	ENST00000567465.2	lncRNA	lncRNA	lncRNA	lncRNA	7	88	2	2.13504	2.3358749999999997	2.53671	0.00624027	0.00395791	0.0718843	0.0549214
chr7	101822176	101822276	3366410	0	+	0.48	(0.476,0.515]	chr7	315215	28	INTRON	INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000497815.5:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000607092.1:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000558469.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	54	2	2.26034	2.335775	2.41121	0.0166235	0.0110342	0.110511	0.0873897
chr1	243068122	243068222	667034	0	-	0.46	(0.44,0.476]	chr1	79139	4	SS3_PROX	SS3_PROX:INTRON	LINC01347	ENSG00000214837.8	ENST00000627498.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	3	40	2	1.93084	2.3357349999999997	2.74063	0.0443175	0.0176095	0.162302	0.105143
chr19	47628991	47629091	7085961	0	+	0.46	(0.44,0.476]	chr19	709045	210	INTRON	INTRON	ENSG00000268746	ENSG00000268746.1	ENST00000599924.1	lncRNA	lncRNA	lncRNA	lncRNA	3	40	2	1.93084	2.3357349999999997	2.74063	0.0443175	0.0176095	0.162302	0.105143
chr4	458802	458902	2092767	0	-	0.45	(0.44,0.476]	chr4	206783	140	INTRON	INTRON	ABCA11P:ZNF721	ENSG00000251595.7:ENSG00000182903.16	ENST00000451020.6:ENST00000514396.5:ENST00000507854.1:ENST00000515578.5:ENST00000506646.5:ENST00000507078.1:ENST00000511833.3:ENST00000338977.5:ENST00000505900.1	protein_coding	protein_coding	protein_coding:transcribed_processed_pseudogene	protein_coding:nonsense_mediated_decay:processed_transcript	7	84	2	1.84794	2.335725	2.82351	0.0127847	0.00191049	0.0926667	0.0403772
chr16	7996862	7996962	6440477	0	-	0.34	(0.32,0.35]	chr16	620345	186	INTRON	INTRON	ENSG00000260289	ENSG00000260289.2	ENST00000670665.1:ENST00000654046.1:ENST00000567103.2	lncRNA	lncRNA	lncRNA	lncRNA	5	66	2	1.53859	2.33568	3.13277	0.0534261	0.00458313	0.162935	0.0622676
chr2	69941953	69942052	805782	0	+	0.343434	(0.32,0.35]	chr2	89939	38	UTR3	UTR3:EXON_MRNA:INTRON	MXD1	ENSG00000059728.11	ENST00000540449.5:ENST00000264444.7:ENST00000465446.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	66	2	1.53859	2.33568	3.13277	0.0534261	0.00458313	0.162935	0.0622676
chr9	112233923	112234022	4316956	0	-	0.343434	(0.32,0.35]	chr9	397034	13	INTRON	INTRON	PTBP3	ENSG00000119314.16	ENST00000334318.10:ENST00000458258.5:ENST00000374257.6:ENST00000374255.6:ENST00000343327.6	protein_coding	protein_coding	protein_coding	protein_coding	12	178	2	1.94836	2.33568	2.723	0.00752786	1.07419e-4	0.074841	0.00878438
chr19	45855906	45856006	7193792	0	-	0.44	(0.408,0.44]	chr19	728658	2	INTRON	INTRON	SYMPK	ENSG00000125755.19	ENST00000245934.12:ENST00000593504.5:ENST00000599460.5:ENST00000598896.5:ENST00000602061.5:ENST00000598059.5:ENST00000594293.5:ENST00000593959.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	107	2	1.54675	2.335665	3.12458	0.0189707	4.61817e-4	0.108861	0.0194611
chr10	915795	915894	4542428	0	-	0.363636	(0.35,0.378]	chr10	419304	124	INTRON	INTRON	LARP4B	ENSG00000107929.16	ENST00000316157.8:ENST00000690516.1:ENST00000476529.5:ENST00000406525.6:ENST00000481118.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	14	190	2	2.15905	2.335605	2.51216	9.98414e-4	5.36769e-4	0.0290779	0.0214775
chr15	64531550	64531650	6044799	0	+	0.5	(0.476,0.515]	chr15	575696	286	INTRON	INTRON	ZNF609	ENSG00000180357.10	ENST00000326648.5:ENST00000558680.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	113	2	1.90361	2.33559	2.76757	0.0102027	2.52719e-4	0.0850389	0.0141489
chr1	156337106	156337206	566706	0	-	0.58	(0.57,1]	chr1	68037	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS5_PROX:INTRON	CCT3	ENSG00000163468.15	ENST00000295688.8:ENST00000368258.7:ENST00000368259.6:ENST00000368262.7:ENST00000472765.6:ENST00000413555.5:ENST00000496684.6:ENST00000533194.5:ENST00000463132.5:ENST00000446905.5:ENST00000478640.6:ENST00000415548.1:ENST00000368256.3:ENST00000489870.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	58	2	1.56203	2.33558	3.10913	0.0238371	6.33795e-5	0.129075	0.00708877
chr6	17645075	17645173	3065581	0	-	0.469388	(0.44,0.476]	chr6	284800	47	INTRON	INTRON	NUP153	ENSG00000124789.12	ENST00000613258.4:ENST00000537253.5:ENST00000262077.3	protein_coding	protein_coding	protein_coding	protein_coding	14	167	2	1.75637	2.33553	2.91469	0.00673049	4.52924e-5	0.0709441	0.00547142
chr9	36656740	36656840	4117323	0	+	0.52	(0.515,0.57]	chr9	375313	1	SS3_PROX	SS3_PROX:INTRON	MELK	ENSG00000165304.8	ENST00000543751.5:ENST00000536860.5:ENST00000541717.4:ENST00000536329.5:ENST00000627766.2:ENST00000298048.7:ENST00000536987.5:ENST00000545008.5:ENST00000626154.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	42	2	2.06206	2.3355249999999996	2.60899	0.0232669	0.0135396	0.118148	0.101363
chr15	50589291	50589391	6172279	0	-	0.31	(0.28,0.32]	chr15	588247	3	SS5_PROX	SS5_PROX:INTRON	TRPM7	ENSG00000092439.16	ENST00000646667.1:ENST00000560955.5:ENST00000645282.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	12	183	2	1.63533	2.33552	3.03571	0.0175197	8.74948e-5	0.105003	0.00785215
chr20	47247704	47247803	7348409	0	-	0.494949	(0.476,0.515]	chr20	749276	8	INTRON	INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000467200.6:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000468376.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	106	2	2.03337	2.3354850000000003	2.6376	0.00851546	6.87765e-4	0.0833995	0.0240091
chr1	6545879	6545979	368034	0	-	0.43	(0.408,0.44]	chr1	43225	3	INTRON	INTRON	NOL9	ENSG00000162408.11	ENST00000377705.6	protein_coding	protein_coding	protein_coding	protein_coding	10	126	2	2.11194	2.33548	2.55902	0.00306831	7.64731e-4	0.0494933	0.0254338
chr5	171408010	171408098	2546781	0	+	0.318182	(0.28,0.32]	chr5	243127	2	SS5_PROX	SS5_PROX:INTRON	NPM1	ENSG00000181163.14	ENST00000517671.5:ENST00000676613.1:ENST00000678186.1:ENST00000678267.1:ENST00000677297.1:ENST00000521672.6:ENST00000679190.1:ENST00000677467.1:ENST00000678280.1:ENST00000676625.1:ENST00000351986.10:ENST00000676504.1:ENST00000676589.1:ENST00000677357.1:ENST00000296930.10:ENST00000521260.2:ENST00000518587.2:ENST00000678774.1:ENST00000677600.1:ENST00000677741.1:ENST00000677325.1:ENST00000677672.1:ENST00000677907.1:ENST00000677904.1:ENST00000677682.1:ENST00000524204.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	70	2	1.47299	2.335365	3.19774	0.0597769	0.00548491	0.189982	0.0648867
chr1	26725109	26725209	51462	0	+	0.44	(0.408,0.44]	chr1	6542	272	INTRON	INTRON	ARID1A	ENSG00000117713.21	ENST00000430799.7:ENST00000324856.13:ENST00000637465.1:ENST00000457599.6	protein_coding	protein_coding	protein_coding	protein_coding	6	79	2	2.30838	2.33533	2.36228	0.00547703	0.00528443	0.0671198	0.0635846
chr1	47313256	47313349	446105	0	-	0.419355	(0.408,0.44]	chr1	54079	1	SS3_PROX	SS3_PROX:INTRON	STIL	ENSG00000123473.17	ENST00000360380.7:ENST00000371877.8:ENST00000337817.10:ENST00000447475.7	protein_coding	protein_coding	protein_coding	protein_coding	6	75	2	1.58026	2.335315	3.09037	0.0444624	5.47766e-4	0.149888	0.0212924
chr6	170568465	170568558	3037527	0	+	0.602151	(0.57,1]	chr6	283143	6	INTRON	INTRON	TBP	ENSG00000112592.15	ENST00000540980.5:ENST00000392092.7:ENST00000230354.10:ENST00000636632.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	31	2	1.87172	2.335305	2.79889	0.0152293	0.0110274	0.0996307	0.0927187
chr17	81848822	81848920	6849992	0	-	0.479592	(0.476,0.515]	chr17	678337	4	INTRON	INTRON	P4HB	ENSG00000185624.16	ENST00000680083.1:ENST00000680416.1:ENST00000575069.6:ENST00000681030.1:ENST00000680884.1:ENST00000681161.1:ENST00000681515.1:ENST00000679470.1:ENST00000571617.2:ENST00000679688.1:ENST00000680226.1:ENST00000680400.1:ENST00000574914.2:ENST00000331483.9:ENST00000680914.1:ENST00000680593.1:ENST00000681420.1:ENST00000681693.1:ENST00000576390.6:ENST00000681835.1:ENST00000681954.1:ENST00000681566.1:ENST00000680076.1:ENST00000680105.1:ENST00000680368.1:ENST00000681872.1:ENST00000466567.3:ENST00000679396.1:ENST00000415593.6:ENST00000679889.1:ENST00000681571.1:ENST00000680719.1:ENST00000680191.1:ENST00000680547.1:ENST00000680799.1:ENST00000680208.1:ENST00000679439.1:ENST00000439918.7:ENST00000472244.6:ENST00000681031.1:ENST00000680846.1:ENST00000681068.1:ENST00000477607.7:ENST00000679366.1:ENST00000681020.1:ENST00000681614.1:ENST00000681485.1:ENST00000679628.1:ENST00000679455.1:ENST00000680259.1:ENST00000680559.1:ENST00000680909.1:ENST00000681760.1:ENST00000681933.1:ENST00000570907.6:ENST00000680732.1:ENST00000680838.1:ENST00000680847.1:ENST00000574007.6:ENST00000573778.7:ENST00000478034.5:ENST00000576380.6:ENST00000576052.2:ENST00000471535.2:ENST00000576541.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	63	2	1.84346	2.335095	2.82673	0.0134403	0.0114152	0.095586	0.0946278
chr17	32841220	32841320	6756756	0	-	0.44	(0.408,0.44]	chr17	664075	110	INTRON	INTRON	MYO1D	ENSG00000176658.17	ENST00000318217.10:ENST00000394649.8:ENST00000579584.5:ENST00000583621.1	protein_coding	protein_coding	protein_coding	protein_coding	5	65	2	2.17784	2.33501	2.49218	0.00916282	0.00855168	0.0855292	0.0780217
chr5	113009874	113009969	2453726	0	+	0.336842	(0.32,0.35]	chr5	235119	15	INTRON	INTRON	DCP2	ENSG00000172795.17	ENST00000515408.5:ENST00000513585.6:ENST00000389063.3:ENST00000674880.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	135	2	1.74637	2.334915	2.92346	0.0210156	1.34386e-4	0.112328	0.0099912
chr12	110021688	110021785	5224915	0	+	0.463918	(0.44,0.476]	chr12	495036	5	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	ANKRD13A	ENSG00000076513.17	ENST00000553025.5:ENST00000261739.9:ENST00000550404.1:ENST00000547639.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	55	2	1.75023	2.334865	2.9195	0.0240995	0.0102021	0.129929	0.0850389
chr16	23887975	23888074	6324280	0	+	0.454545	(0.44,0.476]	chr16	605697	188	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000645517.1:ENST00000498739.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	78	2	2.32184	2.3347949999999997	2.34775	0.00609071	0.00466011	0.0676501	0.0629753
chr16	89355564	89355664	6542233	0	-	0.4	(0.378,0.408]	chr16	634215	119	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000647238.1:ENST00000644045.1:ENST00000643147.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	103	2	2.27284	2.33474	2.39664	0.00480522	0.00173415	0.0602209	0.03851
chr2	69353658	69353758	1146961	0	-	0.41	(0.408,0.44]	chr2	122477	31	INTRON	INTRON	GFPT1	ENSG00000198380.13	ENST00000361060.5:ENST00000357308.9:ENST00000674507.1:ENST00000674438.1	protein_coding	protein_coding	protein_coding	protein_coding	9	78	2	1.38093	2.334725	3.28852	0.0305221	0.00287185	0.143385	0.0474836
chr2	241318939	241319034	1053637	0	+	0.494737	(0.476,0.515]	chr2	112195	2	INTRON	INTRON	SEPTIN2	ENSG00000168385.18	ENST00000391973.6:ENST00000428282.5:ENST00000492978.5:ENST00000360051.7:ENST00000407017.5:ENST00000445030.5:ENST00000428524.5:ENST00000469434.5:ENST00000616972.4:ENST00000495463.5:ENST00000482304.5:ENST00000475474.5:ENST00000401990.5:ENST00000469175.5:ENST00000407971.5:ENST00000461048.5:ENST00000457335.5:ENST00000436795.5:ENST00000494824.5:ENST00000411484.5:ENST00000462147.5:ENST00000434955.5:ENST00000466211.5:ENST00000391971.7:ENST00000402092.6:ENST00000484740.1:ENST00000473479.5:ENST00000464128.5:ENST00000441533.5:ENST00000467971.5:ENST00000425899.5:ENST00000443492.5:ENST00000437066.5:ENST00000429791.5:ENST00000420786.5:ENST00000475823.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	55	2	1.78315	2.3347249999999997	2.8863	0.0215899	0.0111679	0.123836	0.0877435
chr5	88870453	88870552	2671321	0	-	0.414141	(0.408,0.44]	chr5	252833	305	INTRON	INTRON	MEF2C	ENSG00000081189.16	ENST00000504921.7:ENST00000424173.6:ENST00000340208.9:ENST00000636998.1:ENST00000637481.1:ENST00000625674.2:ENST00000437473.6:ENST00000510942.5:ENST00000506554.5:ENST00000637732.1:ENST00000514015.5:ENST00000629612.2:ENST00000636294.1:ENST00000627659.2:ENST00000508569.5:ENST00000513252.5:ENST00000502983.5:ENST00000508610.5:ENST00000503075.1:ENST00000511086.1:ENST00000515093.1:ENST00000509349.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	66	2	1.9831	2.33466	2.68622	0.018491	0.00418848	0.116694	0.0572071
chr1	227065173	227065273	649163	0	-	0.36	(0.35,0.378]	chr1	76984	54	INTRON	INTRON	CDC42BPA	ENSG00000143776.20	ENST00000366766.8:ENST00000366769.7:ENST00000334218.9:ENST00000366767.7:ENST00000448940.5:ENST00000442054.5:ENST00000366764.8:ENST00000441725.1:ENST00000684580.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	48	2	2.30249	2.3346299999999998	2.36677	0.0519726	0.0139343	0.176696	0.0957526
chr2	96249511	96249611	1180005	0	-	0.53	(0.515,0.57]	chr2	126159	11	UTR3	UTR3:EXON_MRNA	TMEM127	ENSG00000135956.9	ENST00000258439.8	protein_coding	protein_coding	protein_coding	protein_coding	3	35	2	2.32836	2.334615	2.34087	0.0469761	0.0126662	0.151917	0.0982897
chr2	61357966	61358066	1129415	0	-	0.45	(0.44,0.476]	chr2	121448	69	INTRON	INTRON	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000453133.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	61	2	1.54104	2.334515	3.12799	0.0339289	0.0050635	0.146815	0.0621733
chr21	34098443	34098542	7401343	0	+	0.343434	(0.32,0.35]	chr21	753974	12	UTR3	UTR3:EXON_MRNA:INTRON	MRPS6:SLC5A3	ENSG00000243927.6:ENSG00000198743.7	ENST00000488492.5:ENST00000477091.5:ENST00000399312.3:ENST00000381151.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	192	2	1.8237	2.33451	2.84532	0.00946453	5.15613e-5	0.0817766	0.00585477
chr8	20220999	20221098	3710852	0	+	0.464646	(0.44,0.476]	chr8	344370	7	UTR3	UTR3:EXON_MRNA:INTRON	ATP6V1B2	ENSG00000147416.11	ENST00000276390.7:ENST00000523482.5:ENST00000521442.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	48	2	1.92837	2.3345	2.74063	0.0222222	0.0176095	0.124303	0.105143
chr21	37405974	37406074	7406614	0	+	0.29	(0.28,0.32]	chr21	754850	305	INTRON	INTRON	DYRK1A	ENSG00000157540.22	ENST00000646523.1:ENST00000647425.1:ENST00000647188.2:ENST00000647504.1:ENST00000644942.1:ENST00000338785.8:ENST00000643624.1:ENST00000643551.1:ENST00000426672.6:ENST00000398960.7	protein_coding	protein_coding	protein_coding	protein_coding	6	97	2	2.25939	2.3344899999999997	2.40959	0.021772	0.00207334	0.11491	0.0422762
chr9	112324054	112324153	4317865	0	-	0.242424	[0,0.28]	chr9	397079	258	INTRON	INTRON	PTBP3	ENSG00000119314.16	ENST00000334318.10:ENST00000458258.5:ENST00000374257.6:ENST00000374255.6:ENST00000343327.6:ENST00000487997.1:ENST00000210227.4:ENST00000450374.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	58	2	1.812	2.33445	2.8569	0.0729149	0.013822	0.189235	0.10247
chr9	131131036	131131136	4215676	0	+	0.34	(0.32,0.35]	chr9	386525	2	SS5_PROX	SS5_PROX:INTRON	NUP214	ENSG00000126883.19	ENST00000695497.1:ENST00000695498.1:ENST00000695496.1:ENST00000695495.1:ENST00000695494.1:ENST00000695493.1:ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000525561.2:ENST00000651022.1:ENST00000651639.1:ENST00000695499.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	108	2	1.70656	2.33444	2.96232	0.0183637	0.00118924	0.108623	0.031662
chr11	18594622	18594721	4749914	0	+	0.484848	(0.476,0.515]	chr11	439783	53	INTRON	INTRON	SPTY2D1OS	ENSG00000247595.5	ENST00000636313.1	protein_coding	processed_transcript	protein_coding	processed_transcript	7	82	2	1.55865	2.3344300000000002	3.11021	0.034348	5.02606e-4	0.135807	0.020217099999999998
chr11	64771063	64771163	4965229	0	-	0.46	(0.44,0.476]	chr11	467527	2	SS5_PROX	SS5_PROX:INTRON	SF1	ENSG00000168066.21	ENST00000334944.9:ENST00000227503.13:ENST00000377394.7:ENST00000448404.5:ENST00000377390.8:ENST00000377387.5:ENST00000681407.1:ENST00000433274.6:ENST00000496969.1:ENST00000633899.1:ENST00000413951.5:ENST00000432725.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	61	2	1.40212	2.3344050000000003	3.26669	0.0524678	0.00305435	0.178047	0.0493883
chr19	15308942	15309042	7147170	0	-	0.46	(0.44,0.476]	chr19	721965	286	INTRON	INTRON	BRD4	ENSG00000141867.19	ENST00000679869.1:ENST00000360016.9:ENST00000594841.5:ENST00000597315.5:ENST00000601941.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	61	2	1.40212	2.3344050000000003	3.26669	0.0524678	0.00305435	0.178047	0.0493883
chr11	67143771	67143871	4812692	0	+	0.44	(0.408,0.44]	chr11	448111	4	SS5_PROX	SS5_PROX:INTRON	KDM2A	ENSG00000173120.15	ENST00000529006.7:ENST00000398645.6:ENST00000532436.5:ENST00000527157.1:ENST00000308783.9	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	41	2	2.27698	2.3343	2.39162	0.0583528	0.0105837	0.167723	0.0911864
chr4	78784509	78784608	1981466	0	+	0.424242	(0.408,0.44]	chr4	198463	74	INTRON	INTRON	BMP2K	ENSG00000138756.19	ENST00000389010.7:ENST00000502613.3:ENST00000502871.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	41	2	2.27698	2.3343	2.39162	0.0583528	0.0105837	0.167723	0.0911864
chr1	40232843	40232941	80686	0	+	0.520408	(0.515,0.57]	chr1	10443	8	INTRON	INTRON	RLF	ENSG00000117000.9	ENST00000372771.5	protein_coding	protein_coding	protein_coding	protein_coding	4	46	2	2.21273	2.33429	2.45585	0.0196151	0.00797827	0.109486	0.0798772
chr21	10422893	10422992	7368223	0	+	0.454545	(0.44,0.476]	chr21	751975	76	INTRON	INTRON	BAGE2	ENSG00000187172.15	ENST00000474011.5:ENST00000470054.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	4	48	2	1.69402	2.3342650000000003	2.97451	0.0456129	0.00853825	0.164236	0.0780043
chr7	72888138	72888237	3329877	0	+	0.434343	(0.408,0.44]	chr7	309555	79	INTRON	INTRON	POM121	ENSG00000196313.13	ENST00000627934.3:ENST00000395270.5	protein_coding	protein_coding	protein_coding	protein_coding	7	67	2	1.3378	2.334235	3.33067	0.050805	0.0024459	0.175989	0.0445752
chr22	20127279	20127355	7478697	0	+	0.302632	(0.28,0.32]	chr22	762808	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	RANBP1	ENSG00000099901.17	ENST00000430524.6:ENST00000402752.5:ENST00000448394.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	51	2	1.86684	2.334205	2.80157	0.0605813	0.0147132	0.171122	0.106558
chr1	11274560	11274659	24766	0	+	0.434343	(0.408,0.44]	chr1	2627	1	INTRON	INTRON	UBIAD1	ENSG00000120942.14	ENST00000376810.6:ENST00000376804.2:ENST00000486588.6:ENST00000483738.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	51	2	1.92319	2.3341849999999997	2.74518	0.0247322	0.0152229	0.12011	0.108535
chr11	17077641	17077667	4927738	0	-	0.615385	(0.57,1]	chr11	461309	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	RPS13	ENSG00000110700.7	ENST00000525634.6:ENST00000526895.5:ENST00000228140.6:ENST00000525828.1:ENST00000533969.1:ENST00000527571.1:ENST00000534329.1:ENST00000528074.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	21	131	2	2.0888	2.334155	2.57951	3.68888e-4	1.29137e-5	0.0178272	0.00266147
chr10	68617719	68617819	4441461	0	+	0.55	(0.515,0.57]	chr10	409530	163	INTRON	INTRON	TET1	ENSG00000138336.9	ENST00000373644.5	protein_coding	protein_coding	protein_coding	protein_coding	2	26	2	2.23241	2.33415	2.43589	0.0581268	0.0370871	0.188651	0.139194
chr14	61767752	61767852	5745321	0	+	0.53	(0.515,0.57]	chr14	545374	4	SS5_PROX	SS5_PROX:INTRON	SNAPC1	ENSG00000023608.5	ENST00000216294.5	protein_coding	protein_coding	protein_coding	protein_coding	2	26	2	2.23241	2.33415	2.43589	0.0581268	0.0370871	0.188651	0.139194
chr17	38307330	38307429	6605201	0	+	0.535354	(0.515,0.57]	chr17	642947	3	INTRON	INTRON	MRPL45	ENSG00000278845.5	ENST00000619548.1:ENST00000613675.5	protein_coding	protein_coding	protein_coding	protein_coding	2	26	2	2.23241	2.33415	2.43589	0.0581268	0.0370871	0.188651	0.139194
chr21	36327272	36327372	7403758	0	+	0.54	(0.515,0.57]	chr21	754279	66	INTRON	INTRON	MORC3	ENSG00000159256.13	ENST00000492336.5:ENST00000400485.6:ENST00000487909.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	26	2	2.23241	2.33415	2.43589	0.0581268	0.0370871	0.188651	0.139194
chr21	45083780	45083880	7417944	0	+	0.56	(0.515,0.57]	chr21	756262	86	INTRON	INTRON	ADARB1	ENSG00000197381.17	ENST00000462214.5:ENST00000460734.5:ENST00000348831.9:ENST00000389861.7:ENST00000389863.8:ENST00000492414.5:ENST00000496664.5:ENST00000437626.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	26	2	2.23241	2.33415	2.43589	0.0581268	0.0370871	0.188651	0.139194
chr3	37161246	37161346	1656484	0	-	0.54	(0.515,0.57]	chr3	170022	62	INTRON	INTRON	LRRFIP2	ENSG00000093167.18	ENST00000336686.9:ENST00000354379.8:ENST00000421276.6:ENST00000396428.6:ENST00000440230.5:ENST00000416425.5:ENST00000461672.5:ENST00000438374.5:ENST00000452742.5:ENST00000436858.5:ENST00000434749.5:ENST00000482466.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	26	2	2.23241	2.33415	2.43589	0.0581268	0.0370871	0.188651	0.139194
chr3	120027020	120027120	1794781	0	-	0.53	(0.515,0.57]	chr3	180278	50	INTRON	INTRON	GSK3B:ENSG00000288662	ENSG00000082701.17:ENSG00000288662.1	ENST00000264235.13:ENST00000316626.6:ENST00000678439.1:ENST00000650344.2:ENST00000677788.1:ENST00000678245.1:ENST00000677169.1:ENST00000677128.1:ENST00000678483.1:ENST00000677530.1:ENST00000677034.1:ENST00000679131.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA:processed_transcript	2	26	2	2.23241	2.33415	2.43589	0.0581268	0.0370871	0.188651	0.139194
chr3	138821119	138821219	1831364	0	-	0.52	(0.515,0.57]	chr3	184062	242	INTRON	INTRON	PIK3CB	ENSG00000051382.9	ENST00000674063.1:ENST00000477593.5:ENST00000462898.5:ENST00000483968.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	26	2	2.23241	2.33415	2.43589	0.0581268	0.0370871	0.188651	0.139194
chr4	174291869	174291969	2082659	0	+	0.53	(0.515,0.57]	chr4	205805	59	INTRON	INTRON	CEP44	ENSG00000164118.13	ENST00000505124.5:ENST00000457424.6:ENST00000396791.7:ENST00000503780.6:ENST00000514712.5:ENST00000515299.5:ENST00000503053.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	26	2	2.23241	2.33415	2.43589	0.0581268	0.0370871	0.188651	0.139194
chr6	97236179	97236279	3164293	0	-	0.57	(0.515,0.57]	chr6	295106	18	INTRON	INTRON	MMS22L	ENSG00000146263.12	ENST00000683635.1:ENST00000275053.8:ENST00000369251.6:ENST00000509383.5:ENST00000510018.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	26	2	2.23241	2.33415	2.43589	0.0581268	0.0370871	0.188651	0.139194
chr9	131479027	131479119	4217840	0	+	0.532609	(0.515,0.57]	chr9	386818	4	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PRRC2B	ENSG00000288701.1	ENST00000684596.1:ENST00000683519.1:ENST00000682501.1:ENST00000683353.1:ENST00000682662.1	protein_coding	protein_coding	protein_coding	protein_coding	2	26	2	2.23241	2.33415	2.43589	0.0581268	0.0370871	0.188651	0.139194
chr3	198209770	198209870	1600262	0	+	0.43	(0.408,0.44]	chr3	165905	1	SS3_PROX	SS3_PROX:INTRON	FAM157A	ENSG00000236438.7	ENST00000634862.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	3	41	2	2.00228	2.334035	2.66579	0.0389732	0.019342	0.143072	0.119831
chr1	47283123	47283218	445791	0	-	0.431579	(0.408,0.44]	chr1	54020	8	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:INTRON	STIL	ENSG00000123473.17	ENST00000360380.7:ENST00000371877.8:ENST00000337817.10:ENST00000683977.1:ENST00000682977.1:ENST00000396221.6:ENST00000447475.7:ENST00000418131.1:ENST00000436811.2:ENST00000682165.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	10	84	2	1.42291	2.334005	3.2451	0.0222978	0.00337792	0.124385	0.0516884
chr1	8811409	8811508	373725	0	-	0.484848	(0.476,0.515]	chr1	43563	45	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000656437.1:ENST00000659924.1	protein_coding	protein_coding	protein_coding	protein_coding	4	48	2	1.96833	2.3339999999999996	2.69967	0.0195838	0.0195007	0.119967	0.109483
chr6	3266501	3266600	2789321	0	+	0.515152	(0.476,0.515]	chr6	263453	23	UTR3	UTR3:EXON_MRNA:INTRON	PSMG4	ENSG00000180822.12	ENST00000509933.1:ENST00000380306.8:ENST00000380305.4:ENST00000438998.7:ENST00000419065.6:ENST00000473000.2:ENST00000324987.4:ENST00000451246.2:ENST00000454610.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	64	2	1.59365	2.333935	3.07422	0.0306944	0.00506023	0.13151	0.0646039
chr2	152714249	152714349	1246492	0	-	0.33	(0.32,0.35]	chr2	132361	3	SS5_PROX	SS5_PROX:INTRON	PRPF40A	ENSG00000196504.20	ENST00000410080.8:ENST00000545856.8:ENST00000696382.1:ENST00000696381.1:ENST00000354363.11:ENST00000493468.7:ENST00000448428.2:ENST00000489741.1:ENST00000450303.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	49	2	2.18092	2.333925	2.48693	0.0338094	0.0256608	0.146709	0.120491
chr7	105041822	105041921	3374900	0	+	0.313131	(0.28,0.32]	chr7	315877	4	INTRON	INTRON	KMT2E	ENSG00000005483.22	ENST00000622386.2:ENST00000257745.9:ENST00000334884.9:ENST00000311117.8:ENST00000478990.5:ENST00000495267.5:ENST00000476671.5:ENST00000667857.1:ENST00000474203.5:ENST00000482560.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	14	211	2	2.29349	2.33391	2.37433	0.00356769	3.86853e-4	0.0532113	0.0177751
chr5	146251110	146251210	2514597	0	+	0.3	(0.28,0.32]	chr5	240194	133	INTRON	INTRON	ENSG00000275740:RBM27	ENSG00000275740.1:ENSG00000091009.8	ENST00000506502.2:ENST00000265271.7	protein_coding	protein_coding	protein_coding	protein_coding	4	61	2	1.98806	2.3339049999999997	2.67975	0.0252505	0.0199553	0.120668	0.12011
chr21	10439852	10439952	7368393	0	+	0.25	[0,0.28]	chr21	751975	246	INTRON	INTRON	BAGE2	ENSG00000187172.15	ENST00000474011.5:ENST00000470054.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	10	183	2	1.76367	2.333825	2.90398	0.0192923	2.49497e-4	0.108861	0.0140229
chr3	12658546	12658645	1617377	0	-	0.424242	(0.408,0.44]	chr3	166996	91	INTRON	INTRON	RAF1	ENSG00000132155.14	ENST00000688543.1:ENST00000685348.1:ENST00000251849.9:ENST00000442415.7:ENST00000688444.1:ENST00000692093.1:ENST00000691724.1:ENST00000423275.6:ENST00000687326.1:ENST00000688803.1:ENST00000689876.1:ENST00000686455.1:ENST00000684903.1:ENST00000693312.1:ENST00000690460.1:ENST00000692773.1:ENST00000688625.1:ENST00000693664.1:ENST00000686762.1:ENST00000692311.1:ENST00000692558.1:ENST00000691779.1:ENST00000685738.1:ENST00000690397.1:ENST00000687923.1:ENST00000688269.1:ENST00000693705.1:ENST00000689097.1:ENST00000691899.1:ENST00000689914.1:ENST00000690625.1:ENST00000689389.1:ENST00000687257.1:ENST00000686409.1:ENST00000685653.1:ENST00000689540.1:ENST00000691396.1:ENST00000685437.1:ENST00000689418.1:ENST00000687940.1:ENST00000689481.1:ENST00000491290.2:ENST00000686479.1:ENST00000689033.1:ENST00000692777.1:ENST00000689226.1:ENST00000691718.1:ENST00000692959.1:ENST00000685740.1:ENST00000688753.1:ENST00000688779.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	57	2	1.58026	2.3338200000000002	3.08738	0.0444624	0.00478231	0.149888	0.0636201
chr12	50994999	50995092	5324454	0	-	0.537634	(0.515,0.57]	chr12	507667	5	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	SLC11A2	ENSG00000110911.17	ENST00000547688.7:ENST00000644495.1:ENST00000643884.1:ENST00000546636.5:ENST00000547198.5:ENST00000646264.1:ENST00000394904.9:ENST00000262052.9:ENST00000550782.5:ENST00000643123.1:ENST00000646740.1:ENST00000642227.1:ENST00000541174.6:ENST00000545993.7:ENST00000546743.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	48	2	1.79136	2.3338099999999997	2.87626	0.0638444	0.00136224	0.177811	0.0339121
chr6	44252767	44252855	2872901	0	+	0.488636	(0.476,0.515]	chr6	272618	1	SS3_PROX	SS3_PROX:INTRON	HSP90AB1	ENSG00000096384.20	ENST00000620073.4:ENST00000353801.7:ENST00000371646.10:ENST00000371554.2	protein_coding	protein_coding	protein_coding	protein_coding	39	469	2	2.17567	2.33373	2.49179	1.16694e-4	5.1359e-5	0.00976708	0.00585477
chr2	15529543	15529643	1072844	0	-	0.36	(0.35,0.378]	chr2	114441	178	INTRON	INTRON	NBAS	ENSG00000151779.13	ENST00000281513.10	protein_coding	protein_coding	protein_coding	protein_coding	5	60	2	1.77736	2.333695	2.89003	0.0225073	0.0122391	0.124921	0.0910127
chr19	49103682	49103777	7088566	0	+	0.631579	(0.57,1]	chr19	709565	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	SNRNP70	ENSG00000104852.15	ENST00000601065.5:ENST00000598441.6:ENST00000401730.5:ENST00000221448.9:ENST00000595231.5:ENST00000544278.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	43	2	1.9324	2.3336949999999996	2.73499	0.00747247	0.00237434	0.0772645	0.0438057
chr1	113102529	113102626	188404	0	+	0.42268	(0.408,0.44]	chr1	20907	17	INTRON	INTRON	LRIG2	ENSG00000198799.12	ENST00000361127.6:ENST00000466069.5:ENST00000492207.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	68	2	1.61024	2.3336449999999997	3.05705	0.0200746	0.00658331	0.121073	0.0701901
chr5	54012410	54012510	2617928	0	-	0.35	(0.32,0.35]	chr5	248835	1004	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	87	2	1.77253	2.33364	2.89475	0.0271031	0.00160352	0.123904	0.0367961
chr1	96812855	96812928	168869	0	+	0.369863	(0.35,0.378]	chr1	18266	3	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	PTBP2	ENSG00000117569.19	ENST00000482253.5:ENST00000675735.1:ENST00000609116.5:ENST00000674951.1:ENST00000675080.1:ENST00000426398.3:ENST00000370197.5:ENST00000370198.5:ENST00000476419.5:ENST00000676292.1:ENST00000676096.1:ENST00000675365.1:ENST00000674579.1:ENST00000675401.1:ENST00000459735.5:ENST00000476783.5:ENST00000492905.5:ENST00000462433.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	44	2	2.32443	2.333605	2.34278	0.0544216	0.0129593	0.164972	0.0991015
chr11	75407105	75407205	4831907	0	+	0.39	(0.378,0.408]	chr11	450865	3	INTRON	INTRON	RPS3	ENSG00000149273.15	ENST00000527446.5	protein_coding	protein_coding	protein_coding	protein_coding	4	58	2	2.11103	2.33355	2.55607	0.0266911	0.00704647	0.134419	0.0718189
chr20	386527	386625	7219054	0	+	0.520408	(0.515,0.57]	chr20	733512	4	INTRON	INTRON	TRIB3	ENSG00000101255.12	ENST00000615226.4:ENST00000217233.9:ENST00000449710.5:ENST00000422053.3	protein_coding	protein_coding	protein_coding	protein_coding	6	56	2	1.97876	2.333545	2.68833	0.0184931	0.00610685	0.108861	0.0706941
chr12	122495461	122495560	5441938	0	-	0.353535	(0.35,0.378]	chr12	520516	23	INTRON	INTRON	ZCCHC8	ENSG00000033030.15	ENST00000672018.1:ENST00000633063.3:ENST00000543897.5:ENST00000536306.5:ENST00000536663.5:ENST00000540586.1	protein_coding	protein_coding	protein_coding	protein_coding	5	60	2	1.49446	2.33345	3.17244	0.054297	0.00487788	0.182243	0.0607461
chr6	149736270	149736370	3246865	0	-	0.26	[0,0.28]	chr6	301678	4	SS5_PROX	SS5_PROX:INTRON	NUP43	ENSG00000120253.14	ENST00000340413.7:ENST00000367404.8:ENST00000403890.7:ENST00000367402.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	169	2	1.35733	2.333435	3.30954	0.0314244	6.69788e-4	0.144381	0.0236302
chr10	92832642	92832740	4491454	0	+	0.336735	(0.32,0.35]	chr10	413692	9	INTRON	INTRON	EXOC6	ENSG00000138190.17	ENST00000671701.1:ENST00000672817.1	protein_coding	protein_coding	protein_coding	protein_coding	5	65	2	1.38564	2.333355	3.28107	0.0793006	0.00262488	0.199711	0.0470772
chr10	11555807	11555906	4555505	0	-	0.292929	(0.28,0.32]	chr10	420447	237	INTRON	INTRON	USP6NL	ENSG00000148429.15	ENST00000609104.6:ENST00000379237.6	protein_coding	protein_coding	protein_coding	protein_coding	3	51	2	2.32871	2.3332100000000002	2.33771	0.0581621	0.0142701	0.167723	0.103838
chr5	180566787	180566887	2562594	0	+	0.5	(0.476,0.515]	chr5	245117	3	SS3_PROX	SS3_PROX:INTRON	CNOT6	ENSG00000113300.13	ENST00000261951.9:ENST00000393356.7:ENST00000618123.4:ENST00000504343.1	protein_coding	protein_coding	protein_coding	protein_coding	3	40	2	2.26034	2.3332100000000002	2.40608	0.0425709	0.0166235	0.148082	0.110511
chrX	65673449	65673549	7671145	0	+	0.49	(0.476,0.515]	chrX	785145	52	INTRON	INTRON	MSN	ENSG00000147065.17	ENST00000609672.5:ENST00000360270.7	protein_coding	protein_coding	protein_coding	protein_coding	3	40	2	2.26034	2.3332100000000002	2.40608	0.0425709	0.0166235	0.148082	0.110511
chr5	131781929	131782029	2720594	0	-	0.49	(0.476,0.515]	chr5	255730	369	INTRON	INTRON	FNIP1	ENSG00000217128.13	ENST00000510461.6:ENST00000307954.12:ENST00000307968.11:ENST00000511848.1	protein_coding	protein_coding	protein_coding	protein_coding	7	82	2	1.52278	2.333205	3.14363	0.0384487	4.25082e-4	0.142348	0.018441
chr20	2653984	2654075	7222213	0	+	0.43956	(0.408,0.44]	chr20	733829	2	SS3_PROX	SS3_PROX:INTRON	NOP56	ENSG00000101361.17	ENST00000651302.1:ENST00000329276.10:ENST00000494697.5:ENST00000469588.5:ENST00000445139.1:ENST00000460258.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	70	2	2.21238	2.333165	2.45395	0.0193525	0.00366321	0.119831	0.0535094
chr1	20768656	20768754	389674	0	-	0.469388	(0.44,0.476]	chr1	46549	6	INTRON	INTRON	HP1BP3	ENSG00000127483.19	ENST00000438032.6:ENST00000312239.10:ENST00000375003.6:ENST00000419948.5:ENST00000424732.5	protein_coding	protein_coding	protein_coding	protein_coding	4	49	2	2.12992	2.33316	2.5364	0.0309324	0.010975	0.13151	0.092635
chr16	68168111	68168210	6371058	0	+	0.535354	(0.515,0.57]	chr16	612221	7	INTRON	INTRON	NFATC3	ENSG00000072736.19	ENST00000563319.5:ENST00000569766.5:ENST00000553077.5:ENST00000566301.5:ENST00000549350.5:ENST00000575270.5:ENST00000346183.8:ENST00000568466.6:ENST00000539828.6:ENST00000349223.9:ENST00000329524.8:ENST00000379165.8:ENST00000562926.5:ENST00000570212.5:ENST00000563796.5:ENST00000567152.5:ENST00000563288.5:ENST00000535127.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	46	2	2.15051	2.33306	2.51561	0.0238113	0.00635044	0.118889	0.0723103
chr4	70292	70392	1905461	0	+	0.37	(0.35,0.378]	chr4	191008	19	INTRON	INTRON	ZNF595	ENSG00000272602.6	ENST00000608255.2:ENST00000609518.5:ENST00000610261.6	protein_coding	protein_coding	protein_coding	protein_coding	3	44	2	1.82887	2.33298	2.83709	0.0584878	0.01435	0.189395	0.0966737
chr6	109380326	109380421	3185895	0	-	0.347368	(0.32,0.35]	chr6	296680	8	EXON_MRNA	EXON_MRNA:INTRON	CD164	ENSG00000135535.17	ENST00000310786.10:ENST00000413644.6:ENST00000504373.2:ENST00000324953.9:ENST00000275080.11:ENST00000499860.6:ENST00000512821.5:ENST00000506649.5:ENST00000512212.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	15	207	2	2.1352	2.3329500000000003	2.5307	9.13824e-4	7.65345e-4	0.0278396	0.025449
chr17	62556934	62557033	6653674	0	+	0.535354	(0.515,0.57]	chr17	649374	28	INTRON	INTRON	TLK2	ENSG00000146872.19	ENST00000582809.5:ENST00000682085.1:ENST00000580705.5:ENST00000346027.10:ENST00000326270.13:ENST00000682203.1:ENST00000343388.11:ENST00000683536.1:ENST00000684440.1:ENST00000684772.1:ENST00000682274.1:ENST00000682827.1:ENST00000682075.1:ENST00000683104.1:ENST00000684012.1:ENST00000581041.5:ENST00000684553.1:ENST00000683737.1:ENST00000581286.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	46	2	2.27238	2.332945	2.39351	0.0161808	0.0100431	0.101453	0.0881096
chrX	124040795	124040894	7717551	0	+	0.30303	(0.28,0.32]	chrX	789512	28	INTRON	INTRON	STAG2	ENSG00000101972.20	ENST00000218089.13:ENST00000455404.5:ENST00000483575.5:ENST00000687810.1:ENST00000687071.1:ENST00000469481.1:ENST00000371160.5:ENST00000435103.5:ENST00000687852.1:ENST00000371145.8:ENST00000692982.1:ENST00000371157.7:ENST00000691035.1:ENST00000686802.1:ENST00000691383.1:ENST00000686127.1:ENST00000371144.7:ENST00000458176.5:ENST00000466748.5:ENST00000471107.1:ENST00000428941.5:ENST00000435215.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	99	2	1.43233	2.3329400000000002	3.23355	0.028373	0.004869	0.138205	0.0607461
chr2	101296975	101297074	1199432	0	-	0.515152	(0.476,0.515]	chr2	128179	14	INTRON	INTRON	RNF149	ENSG00000163162.9	ENST00000424632.5:ENST00000295317.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	41	2	2.23335	2.332885	2.43242	0.0634557	0.0091895	0.177047	0.0855292
chr5	134616097	134616197	2727829	0	-	0.5	(0.476,0.515]	chr5	256716	13	INTRON	INTRON	SAR1B	ENSG00000152700.14	ENST00000402673.7:ENST00000507419.5:ENST00000439578.5:ENST00000503318.5:ENST00000505758.5:ENST00000502286.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	41	2	2.23335	2.332885	2.43242	0.0634557	0.0091895	0.177047	0.0855292
chr9	19077875	19077975	4236345	0	-	0.44	(0.408,0.44]	chr9	389383	3	SS5_PROX	SS5_PROX:INTRON	HAUS6	ENSG00000147874.11	ENST00000380502.8:ENST00000380496.5	protein_coding	protein_coding	protein_coding	protein_coding	4	49	2	1.64062	2.332875	3.02513	0.0557275	0.0059965	0.165463	0.0700606
chr1	111138765	111138865	522467	0	-	0.34	(0.32,0.35]	chr1	61427	3	SS5_PROX	SS5_PROX:INTRON	DRAM2	ENSG00000156171.15	ENST00000484310.6:ENST00000539140.6:ENST00000286692.8:ENST00000496430.6:ENST00000480600.6:ENST00000490780.5:ENST00000463682.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	10	95	2	1.21206	2.3328349999999998	3.45361	0.0501513	0.00193809	0.17488	0.0399255
chr9	2800863	2800962	4228121	0	-	0.484848	(0.476,0.515]	chr9	388650	177	INTRON	INTRON	PUM3	ENSG00000080608.10	ENST00000490444.2	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	4	55	2	2.28112	2.33277	2.38442	0.0417472	0.00700958	0.161736	0.0718189
chr1	167400160	167400259	246673	0	+	0.515152	(0.476,0.515]	chr1	29383	4	INTRON	INTRON	POU2F1	ENSG00000143190.23	ENST00000367866.7:ENST00000271411.8:ENST00000429375.6:ENST00000367865.5:ENST00000541643.7:ENST00000648671.1:ENST00000367862.9:ENST00000420254.7:ENST00000443275.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	40	2	1.8388	2.332765	2.82673	0.0564473	0.0134403	0.184423	0.0946278
chr7	107459624	107459724	3611981	0	-	0.5	(0.476,0.515]	chr7	336694	466	INTRON	INTRON	COG5	ENSG00000164597.15	ENST00000297135.9:ENST00000347053.8:ENST00000393603.7:ENST00000484237.5:ENST00000475638.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	40	2	1.8388	2.332765	2.82673	0.0564473	0.0134403	0.184423	0.0946278
chr20	62931496	62931596	7362506	0	-	0.44	(0.408,0.44]	chr20	751216	23	INTRON	INTRON	DIDO1	ENSG00000101191.17	ENST00000266070.8:ENST00000370371.8	protein_coding	protein_coding	protein_coding	protein_coding	4	54	2	2.11447	2.33275	2.55103	0.0285207	0.00587353	0.12666	0.0690758
chr8	55980175	55980275	3755352	0	+	0.43	(0.408,0.44]	chr8	349311	100	INTRON	INTRON	LYN	ENSG00000254087.8	ENST00000519728.6:ENST00000520220.6:ENST00000420292.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	54	2	2.11447	2.33275	2.55103	0.0285207	0.00587353	0.12666	0.0690758
chr1	11832038	11832135	25730	0	+	0.412371	(0.408,0.44]	chr1	2861	14	INTRON	INTRON	CLCN6	ENSG00000011021.23	ENST00000312413.10:ENST00000346436.11:ENST00000400892.3:ENST00000376496.4:ENST00000494028.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	40	2	2.07919	2.3327150000000003	2.58624	0.0291499	0.0273686	0.14147	0.123904
chr1	26844007	26844107	52387	0	+	0.42	(0.408,0.44]	chr1	6697	110	INTRON	INTRON	ZDHHC18	ENSG00000204160.12	ENST00000374142.9:ENST00000374141.6:ENST00000534643.5	protein_coding	protein_coding	protein_coding	protein_coding	3	40	2	2.07919	2.3327150000000003	2.58624	0.0291499	0.0273686	0.14147	0.123904
chr19	5045989	5046087	7004191	0	+	0.438776	(0.408,0.44]	chr19	694826	44	INTRON	INTRON	KDM4B	ENSG00000127663.15	ENST00000159111.9:ENST00000611640.4:ENST00000381759.8:ENST00000536461.5	protein_coding	protein_coding	protein_coding	protein_coding	3	40	2	2.07919	2.3327150000000003	2.58624	0.0291499	0.0273686	0.14147	0.123904
chr19	40359795	40359895	7068997	0	+	0.41	(0.408,0.44]	chr19	706108	1	SS5_PROX	SS5_PROX:INTRON	PLD3	ENSG00000105223.20	ENST00000599685.5:ENST00000600479.5:ENST00000392032.6:ENST00000598962.5:ENST00000409419.5:ENST00000409587.5:ENST00000602131.5:ENST00000594085.5:ENST00000409735.9:ENST00000356508.9:ENST00000600948.5:ENST00000594908.5:ENST00000596682.5:ENST00000409281.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	40	2	2.07919	2.3327150000000003	2.58624	0.0291499	0.0273686	0.14147	0.123904
chr22	49544870	49544970	7601528	0	-	0.41	(0.408,0.44]	chr22	778566	1033	INTRON	INTRON	MIR3667HG	ENSG00000188511.13	ENST00000414287.5:ENST00000416411.1	lncRNA	lncRNA	lncRNA	lncRNA	3	40	2	2.07919	2.3327150000000003	2.58624	0.0291499	0.0273686	0.14147	0.123904
chr3	47724629	47724729	1684499	0	-	0.43	(0.408,0.44]	chr3	172088	35	INTRON	INTRON	SMARCC1	ENSG00000173473.11	ENST00000254480.10:ENST00000425518.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	40	2	2.07919	2.3327150000000003	2.58624	0.0291499	0.0273686	0.14147	0.123904
chr5	131794009	131794109	2720715	0	-	0.42	(0.408,0.44]	chr5	255730	490	INTRON	INTRON	FNIP1	ENSG00000217128.13	ENST00000510461.6:ENST00000307954.12:ENST00000307968.11:ENST00000511848.1	protein_coding	protein_coding	protein_coding	protein_coding	3	40	2	2.07919	2.3327150000000003	2.58624	0.0291499	0.0273686	0.14147	0.123904
chr7	148873155	148873255	3670652	0	-	0.44	(0.408,0.44]	chr7	340632	19	INTRON	INTRON	EZH2	ENSG00000106462.12	ENST00000683292.1:ENST00000320356.7:ENST00000492143.5:ENST00000478654.5:ENST00000350995.6:ENST00000460911.5:ENST00000683744.1:ENST00000682317.1:ENST00000682263.1:ENST00000476773.5:ENST00000483967.5:ENST00000498186.5:ENST00000483012.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	16	185	2	1.92604	2.332705	2.73937	0.00154049	2.21712e-4	0.0362716	0.0136127
chr7	150280852	150280952	3673223	0	-	0.32	(0.28,0.32]	chr7	340876	314	INTRON	INTRON	ACTR3C	ENSG00000106526.11	ENST00000478393.5:ENST00000683684.1:ENST00000252071.8	protein_coding	protein_coding	protein_coding	protein_coding	3	51	2	1.83771	2.3327	2.82769	0.0591725	0.0169391	0.189982	0.103888
chr1	2269035	2269135	2574	0	+	0.46	(0.44,0.476]	chr1	557	206	INTRON	INTRON	SKI	ENSG00000157933.10	ENST00000378536.5:ENST00000508416.1:ENST00000478223.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	89	2	2.09333	2.332665	2.572	0.00776307	0.00173736	0.0757646	0.03851
chr7	75424973	75425073	3558308	0	-	0.43	(0.408,0.44]	chr7	331501	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	POM121C	ENSG00000272391.6	ENST00000615331.5:ENST00000607367.5:ENST00000473168.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	54	2	2.21857	2.332655	2.44674	0.0209591	0.00868283	0.112046	0.0842798
chr22	50254629	50254724	7603928	0	-	0.505263	(0.476,0.515]	chr22	778909	10	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	MAPK12	ENSG00000188130.14	ENST00000497036.5:ENST00000215659.13:ENST00000622558.4:ENST00000488504.5:ENST00000395780.5:ENST00000467891.5:ENST00000496942.5:ENST00000482969.5:ENST00000497738.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	9	110	2	1.66417	2.3326149999999997	3.00106	0.0164481	2.78737e-4	0.110077	0.0153269
chr19	11937271	11937371	7019875	0	+	0.33	(0.32,0.35]	chr19	697884	116	INTRON	INTRON	ZNF700	ENSG00000196757.8	ENST00000622593.4:ENST00000254321.10	protein_coding	protein_coding	protein_coding	protein_coding	4	56	2	1.67393	2.3325899999999997	2.99125	0.0496128	0.00958447	0.174685	0.0820838
chr17	37216950	37217050	6761102	0	-	0.52	(0.515,0.57]	chr17	664773	61	INTRON	INTRON	ACACA	ENSG00000278540.5	ENST00000616317.5:ENST00000614428.4:ENST00000612895.4:ENST00000617649.4:ENST00000614450.4:ENST00000612120.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	42	2	1.75372	2.33256	2.9114	0.0386904	0.00826019	0.14279	0.0813266
chr3	40533289	40533389	1402554	0	+	0.52	(0.515,0.57]	chr3	147394	3	UTR3	UTR3:EXON_MRNA:INTRON	ZNF621	ENSG00000172888.12	ENST00000310898.5:ENST00000403205.6:ENST00000431278.5:ENST00000339296.10:ENST00000490457.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	42	2	1.75372	2.33256	2.9114	0.0386904	0.00826019	0.14279	0.0813266
chr7	74122242	74122336	3332218	0	+	0.56383	(0.515,0.57]	chr7	310016	11	UTR3	UTR3:EXON_MRNA	LIMK1	ENSG00000106683.15	ENST00000418310.5:ENST00000336180.7	protein_coding	protein_coding	protein_coding	protein_coding	4	42	2	1.75372	2.33256	2.9114	0.0386904	0.00826019	0.14279	0.0813266
chr12	111481391	111481490	5412028	0	-	0.424242	(0.408,0.44]	chr12	516837	19	INTRON	INTRON	ATXN2	ENSG00000204842.18	ENST00000642389.2:ENST00000608853.5:ENST00000672613.1:ENST00000673436.1:ENST00000643669.2:ENST00000389154.7:ENST00000616825.4:ENST00000389153.10:ENST00000550104.5:ENST00000483311.6:ENST00000672335.1:ENST00000492467.6:ENST00000673557.1:ENST00000673283.1:ENST00000673273.1:ENST00000673449.1:ENST00000535949.5:ENST00000542287.6:ENST00000643474.1:ENST00000643694.1:ENST00000645162.1:ENST00000551755.6:ENST00000644883.1:ENST00000647305.1:ENST00000495342.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	65	2	2.31565	2.3325250000000004	2.3494	0.0154718	0.00462504	0.100909	0.062717
chr10	125090215	125090314	4713632	0	-	0.50505	(0.476,0.515]	chr10	434903	15	INTRON	INTRON	CTBP2	ENSG00000175029.17	ENST00000337195.9:ENST00000411419.6:ENST00000494626.6:ENST00000531469.5:ENST00000460976.5:ENST00000476817.1:ENST00000530884.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	154	2	1.99262	2.332525	2.67243	0.00221416	4.26065e-4	0.0419384	0.0184573
chr2	107732045	107732145	1205870	0	-	0.36	(0.35,0.378]	chr2	128532	144	INTRON	INTRON	LINC01885:ENSG00000286769	ENSG00000237880.2:ENSG00000286769.1	ENST00000654481.1:ENST00000669817.1	lncRNA	lncRNA	lncRNA	lncRNA	5	72	2	2.1686	2.332515	2.49643	0.0116706	0.00752974	0.0891208	0.0773151
chr10	50365222	50365321	4618097	0	-	0.333333	(0.32,0.35]	chr10	425422	205	INTRON	INTRON	SGMS1	ENSG00000198964.14	ENST00000429490.5:ENST00000361781.7:ENST00000619438.4:ENST00000492601.2:ENST00000609445.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	35	2	2.21917	2.332485	2.4458	0.0641245	0.0425977	0.199279	0.148082
chr14	34870101	34870201	5868392	0	-	0.34	(0.32,0.35]	chr14	557415	74	INTRON	INTRON	BAZ1A	ENSG00000198604.11	ENST00000358716.8:ENST00000360310.6:ENST00000382422.6	protein_coding	protein_coding	protein_coding	protein_coding	2	35	2	2.21917	2.332485	2.4458	0.0641245	0.0425977	0.199279	0.148082
chr16	89768619	89768717	6544306	0	-	0.326531	(0.32,0.35]	chr16	634477	10	INTRON	INTRON	FANCA	ENSG00000187741.16	ENST00000561667.2:ENST00000389301.8:ENST00000568369.6:ENST00000564475.6:ENST00000696275.1:ENST00000696287.1:ENST00000696286.1:ENST00000696274.1:ENST00000567510.2:ENST00000696291.1:ENST00000696276.1:ENST00000567205.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	35	2	2.21917	2.332485	2.4458	0.0641245	0.0425977	0.199279	0.148082
chr11	46046369	46046469	4944485	0	-	0.38	(0.378,0.408]	chr11	463333	194	INTRON	INTRON	PHF21A	ENSG00000135365.17	ENST00000676320.1:ENST00000323180.10:ENST00000530587.6:ENST00000693049.1:ENST00000690620.1:ENST00000418153.6:ENST00000525676.6:ENST00000689695.1:ENST00000685188.1:ENST00000532883.5:ENST00000524497.5:ENST00000531959.5:ENST00000687985.1:ENST00000693122.1:ENST00000529734.5:ENST00000529782.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	42	2	2.30961	2.33244	2.35527	0.055088	0.0121511	0.165463	0.0963966
chr16	81466402	81466502	6405213	0	+	0.49	(0.476,0.515]	chr16	615026	205	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8	protein_coding	protein_coding	protein_coding	protein_coding	6	61	2	1.61324	2.33238	3.05152	0.026684	0.0064848	0.134419	0.0699952
chr7	139306236	139306336	3437354	0	+	0.43	(0.408,0.44]	chr7	320285	85	UTR3	UTR3:EXON_MRNA	UBN2	ENSG00000157741.15	ENST00000473989.8	protein_coding	protein_coding	protein_coding	protein_coding	5	65	2	2.13157	2.33235	2.53313	0.0109031	0.00739595	0.0923273	0.074277
chr12	104537680	104537780	5211491	0	+	0.47	(0.44,0.476]	chr12	493315	798	INTRON	INTRON	CHST11	ENSG00000171310.11	ENST00000303694.6:ENST00000547956.1:ENST00000549260.5:ENST00000546689.1	protein_coding	protein_coding	protein_coding	protein_coding	5	56	2	1.5191	2.332345	3.14559	0.0526241	0.00384923	0.160983	0.0562562
chr10	5899449	5899548	4385273	0	+	0.353535	(0.35,0.378]	chr10	404631	39	INTRON	INTRON	FBH1	ENSG00000134452.20	ENST00000397269.7:ENST00000362091.9:ENST00000470089.5:ENST00000462507.1:ENST00000379999.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	86	2	2.28182	2.332275	2.38273	0.00637232	0.00534773	0.0724821	0.0642565
chr20	63200994	63201093	7362628	0	-	0.373737	(0.35,0.378]	chr20	751224	39	INTRON	INTRON	YTHDF1	ENSG00000149658.18	ENST00000370339.8:ENST00000370334.4	protein_coding	protein_coding	protein_coding	protein_coding	6	85	2	2.06612	2.332195	2.59827	0.0164908	0.0016492	0.102419	0.0375159
chr3	185777983	185778083	1885878	0	-	0.43	(0.408,0.44]	chr3	188573	793	INTRON	INTRON	IGF2BP2	ENSG00000073792.16	ENST00000382199.7:ENST00000346192.7:ENST00000457616.6:ENST00000421047.3:ENST00000461957.5:ENST00000493302.5:ENST00000466476.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	103	2	2.32619	2.332175	2.33816	0.00289605	0.00239266	0.0477416	0.0450826
chr5	95733635	95733733	2431265	0	+	0.357143	(0.35,0.378]	chr5	233640	10	INTRON	INTRON	RHOBTB3	ENSG00000164292.13	ENST00000510226.5:ENST00000504949.1:ENST00000506959.5:ENST00000379982.8:ENST00000512878.1:ENST00000510623.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	61	2	1.9392	2.332085	2.72497	0.0198266	0.0126486	0.109608	0.0982897
chr1	28509269	28509360	57206	0	+	0.450549	(0.44,0.476]	chr1	7388	5	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	RCC1:SNHG3	ENSG00000180198.17:ENSG00000242125.3	ENST00000398958.6:ENST00000649185.1:ENST00000413987.1:ENST00000427469.5:ENST00000683442.1:ENST00000434290.6:ENST00000373833.10:ENST00000437681.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	136	1680	2	2.31658	2.332065	2.34755	1.81337e-5	6.3589e-6	0.00346918	0.00177825
chr6	15495531	15495631	2825447	0	+	0.42	(0.408,0.44]	chr6	265224	76	INTRON	INTRON	JARID2	ENSG00000008083.14	ENST00000341776.7:ENST00000397311.4	protein_coding	protein_coding	protein_coding	protein_coding	9	116	2	2.00842	2.332045	2.65567	0.0108512	2.17278e-4	0.0873034	0.0129235
chr1	47279640	47279740	445752	0	-	0.5	(0.476,0.515]	chr1	54007	70	INTRON	INTRON	STIL	ENSG00000123473.17	ENST00000360380.7:ENST00000371877.8:ENST00000337817.10:ENST00000682940.1:ENST00000683977.1:ENST00000682977.1:ENST00000396221.6:ENST00000684618.1:ENST00000447475.7:ENST00000418131.1:ENST00000436811.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	64	2	2.20789	2.3319349999999996	2.45598	0.00945755	0.00820497	0.0817766	0.081115
chr14	37161180	37161280	5877899	0	-	0.34	(0.32,0.35]	chr14	558013	2858	INTRON	INTRON	SLC25A21	ENSG00000183032.12	ENST00000331299.6:ENST00000555449.5:ENST00000557611.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	63	2	1.99307	2.331875	2.67068	0.04271	0.00406276	0.148082	0.0578984
chr15	97701932	97702031	6266835	0	-	0.383838	(0.378,0.408]	chr15	597781	12	EXON_LNCRNA	EXON_LNCRNA:INTRON	LINC00923	ENSG00000251209.9	ENST00000615399.1:ENST00000647870.1:ENST00000619015.1:ENST00000614972.4:ENST00000671187.1:ENST00000664171.1	lncRNA	lncRNA	lncRNA	lncRNA	3	42	2	1.81685	2.33174	2.84663	0.0597868	0.0133954	0.189982	0.0946278
chr6	106661685	106661784	2931451	0	+	0.383838	(0.378,0.408]	chr6	276172	56	INTRON	INTRON	QRSL1	ENSG00000130348.11	ENST00000369046.8	protein_coding	protein_coding	protein_coding	protein_coding	3	42	2	1.81685	2.33174	2.84663	0.0597868	0.0133954	0.189982	0.0946278
chr19	13835248	13835348	7143272	0	-	0.47	(0.44,0.476]	chr19	721118	115	EXON_LNCRNA	EXON_LNCRNA	MIR23AHG	ENSG00000267519.6	ENST00000587762.2	lncRNA	lncRNA	lncRNA	lncRNA	8	90	2	1.95383	2.331715	2.7096	0.00489311	0.00376205	0.0641889	0.0539118
chr2	167865745	167865845	1258458	0	-	0.34	(0.32,0.35]	chr2	133328	25	INTRON	INTRON	B3GALT1-AS1	ENSG00000235335.3	ENST00000430546.2:ENST00000657553.1:ENST00000670221.1:ENST00000436982.2	lncRNA	lncRNA	lncRNA	lncRNA	4	63	2	2.30731	2.3316100000000004	2.35591	0.0176772	0.0128129	0.10525	0.0990564
chr19	28494850	28494949	7166043	0	-	0.383838	(0.378,0.408]	chr19	724189	266	INTRON	INTRON	ENSG00000283403:ENSG00000267243	ENSG00000283403.1:ENSG00000267243.6	ENST00000592347.5:ENST00000593065.5	lncRNA	lncRNA	lncRNA	lncRNA	15	172	2	1.85425	2.3314500000000002	2.80865	0.00233098	3.37643e-4	0.0442989	0.0170719
chr18	9160526	9160625	6869168	0	+	0.414141	(0.408,0.44]	chr18	680561	223	INTRON	INTRON	ANKRD12	ENSG00000101745.17	ENST00000585234.5:ENST00000262126.9:ENST00000577992.1:ENST00000540578.6:ENST00000581635.5:ENST00000400020.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	10	109	2	2.05094	2.33132	2.6117	0.00555224	0.00159258	0.0648867	0.0367961
chr6	119277701	119277801	3205093	0	-	0.51	(0.476,0.515]	chr6	298310	81	INTRON	INTRON	MAN1A1	ENSG00000111885.7	ENST00000368468.4	protein_coding	protein_coding	protein_coding	protein_coding	4	50	2	1.93059	2.33132	2.73205	0.023762	0.0159328	0.118822	0.109464
chr2	84977543	84977643	820327	0	+	0.48	(0.476,0.515]	chr2	91419	49	INTRON	INTRON	KCMF1	ENSG00000176407.18	ENST00000456682.1:ENST00000409785.9:ENST00000428691.5:ENST00000453448.1	protein_coding	protein_coding	protein_coding	protein_coding	5	64	2	2.25138	2.331295	2.41121	0.0110342	0.00692374	0.0873897	0.0753208
chr1	35103596	35103695	68155	0	+	0.414141	(0.408,0.44]	chr1	8682	57	INTRON	INTRON	ZMYM1	ENSG00000197056.11	ENST00000650449.1:ENST00000611874.4:ENST00000417119.5:ENST00000359858.9:ENST00000488455.5:ENST00000373330.1:ENST00000373329.5:ENST00000475654.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	40	2	2.14732	2.3311200000000003	2.51492	0.0329839	0.0237354	0.133816	0.129075
chrX	110074159	110074259	7700751	0	+	0.41	(0.408,0.44]	chrX	788140	64	INTRON	INTRON	TMEM164	ENSG00000157600.12	ENST00000372072.7:ENST00000372073.5:ENST00000372068.7:ENST00000288381.4:ENST00000461715.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	40	2	2.14732	2.3311200000000003	2.51492	0.0329839	0.0237354	0.133816	0.129075
chrX	151956334	151956428	7908441	0	-	0.531915	(0.515,0.57]	chrX	804776	6	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	GABRE	ENSG00000102287.19	ENST00000370328.4:ENST00000486255.1:ENST00000483564.5:ENST00000462018.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	12	127	2	2.2568	2.3310750000000002	2.40535	0.00118386	4.25661e-4	0.0315575	0.0184548
chr22	20950332	20950430	7480848	0	+	0.244898	[0,0.28]	chr22	763101	6	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	CRKL	ENSG00000099942.13	ENST00000354336.8:ENST00000411769.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	144	2582	2	2.30022	2.331	2.36178	1.52416e-4	4.34577e-5	0.0112857	0.00532088
chr1	212811129	212811229	309774	0	+	0.51	(0.476,0.515]	chr1	35765	29	INTRON	INTRON	TATDN3	ENSG00000203705.11	ENST00000532324.5:ENST00000526641.5:ENST00000366973.8:ENST00000531963.5:ENST00000366974.9:ENST00000526997.5:ENST00000533650.5:ENST00000525574.5:ENST00000525569.5:ENST00000527693.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	40	2	1.92984	2.330945	2.73205	0.0466474	0.0159328	0.151522	0.109464
chr19	47136597	47136695	7083926	0	+	0.489796	(0.476,0.515]	chr19	708741	6	INTRON	INTRON	SAE1	ENSG00000142230.13	ENST00000594144.5:ENST00000594526.5:ENST00000597808.5:ENST00000413379.7:ENST00000600706.5:ENST00000270225.12:ENST00000598840.5:ENST00000414294.6:ENST00000600753.1:ENST00000660039.1:ENST00000664120.1:ENST00000596995.1:ENST00000392776.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	40	2	1.92984	2.330945	2.73205	0.0466474	0.0159328	0.151522	0.109464
chr3	67641329	67641428	1733819	0	-	0.494949	(0.476,0.515]	chr3	176602	314	INTRON	INTRON	SUCLG2	ENSG00000172340.15	ENST00000493112.5:ENST00000307227.10:ENST00000492795.1	protein_coding	protein_coding	protein_coding	protein_coding	3	40	2	1.92984	2.330945	2.73205	0.0466474	0.0159328	0.151522	0.109464
chr3	186933187	186933287	1586199	0	+	0.48	(0.476,0.515]	chr3	164314	14	INTRON	INTRON	ST6GAL1	ENSG00000073849.16	ENST00000676786.1:ENST00000463542.1:ENST00000169298.8:ENST00000457772.6:ENST00000455441.5:ENST00000427315.5:ENST00000677292.1:ENST00000468614.1:ENST00000458216.5:ENST00000430309.5:ENST00000417392.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	40	2	1.92984	2.330945	2.73205	0.0466474	0.0159328	0.151522	0.109464
chr14	60742212	60742312	5736794	0	+	0.44	(0.408,0.44]	chr14	544880	69	INTRON	INTRON	MNAT1	ENSG00000020426.11	ENST00000555545.1:ENST00000261245.9:ENST00000556764.5:ENST00000539616.6:ENST00000553354.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	40	2	2.00768	2.33094	2.6542	0.035843	0.0227514	0.152216	0.117618
chr20	3931976	3932075	7308563	0	-	0.383838	(0.378,0.408]	chr20	744262	48	UTR3	UTR3:EXON_MRNA	RNF24	ENSG00000101236.17	ENST00000336095.10:ENST00000358395.11:ENST00000432261.6	protein_coding	protein_coding	protein_coding	protein_coding	7	95	2	1.9714	2.3308150000000003	2.69023	0.0109363	0.00140735	0.0924799	0.0340865
chr12	104522589	104522689	5211340	0	+	0.39	(0.378,0.408]	chr12	493315	647	INTRON	INTRON	CHST11	ENSG00000171310.11	ENST00000303694.6:ENST00000547956.1:ENST00000549260.5:ENST00000546689.1	protein_coding	protein_coding	protein_coding	protein_coding	5	57	2	1.76	2.33081	2.90162	0.023484	0.0113157	0.128531	0.0886121
chr20	6020802	6020901	7230697	0	+	0.525253	(0.515,0.57]	chr20	734840	49	INTRON	INTRON	CRLS1	ENSG00000088766.12	ENST00000452938.5:ENST00000378863.9:ENST00000378868.4:ENST00000489345.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	70	2	1.77888	2.330775	2.88267	0.0139834	0.00152842	0.10247	0.0353936
chr1	243068022	243068122	667033	0	-	0.45	(0.44,0.476]	chr1	79139	3	SS3_PROX	SS3_PROX:INTRON	LINC01347	ENSG00000214837.8	ENST00000627498.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	3	40	2	1.77101	2.33074	2.89047	0.0693975	0.00955699	0.184298	0.0863913
chr14	60114712	60114812	5735605	0	+	0.46	(0.44,0.476]	chr14	544747	1	CDS_START	CDS_START:CDS:EXON_MRNA:INTRON	PCNX4	ENSG00000126773.13	ENST00000317623.8:ENST00000406854.6:ENST00000406949.5:ENST00000556907.1:ENST00000555569.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	40	2	1.77101	2.33074	2.89047	0.0693975	0.00955699	0.184298	0.0863913
chr2	8821278	8821377	1061871	0	-	0.464646	(0.44,0.476]	chr2	113284	21	INTRON	INTRON	KIDINS220	ENSG00000134313.17	ENST00000569008.2:ENST00000689369.1:ENST00000693394.1:ENST00000689852.1:ENST00000693432.1:ENST00000256707.8:ENST00000687912.1:ENST00000685097.1:ENST00000473731.5:ENST00000687894.1:ENST00000691030.1:ENST00000686906.1:ENST00000488729.5:ENST00000489024.5:ENST00000459813.2:ENST00000692419.1:ENST00000689531.1:ENST00000686179.1:ENST00000692889.1:ENST00000687240.1:ENST00000690607.1:ENST00000319688.5:ENST00000689114.1:ENST00000685274.1:ENST00000693366.1:ENST00000693249.1:ENST00000687526.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	40	2	1.77101	2.33074	2.89047	0.0693975	0.00955699	0.184298	0.0863913
chr1	86913305	86913405	499104	0	-	0.33	(0.32,0.35]	chr1	59203	1	SS5_PROX	SS5_PROX:INTRON	SELENOF	ENSG00000183291.18	ENST00000331835.10:ENST00000370554.5:ENST00000648872.1:ENST00000469566.5:ENST00000401030.4:ENST00000467557.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	47	2	1.81328	2.3307	2.84812	0.0615716	0.0147575	0.193423	0.0983813
chr5	139300963	139301063	2499453	0	+	0.5	(0.476,0.515]	chr5	238913	11	INTRON	INTRON	MATR3	ENSG00000280987.4:ENSG00000015479.20	ENST00000509990.5:ENST00000506147.5:ENST00000512107.5:ENST00000361059.7:ENST00000394800.6:ENST00000502929.5:ENST00000504203.5:ENST00000514694.5:ENST00000509644.5:ENST00000505016.2:ENST00000502394.1:ENST00000512876.5:ENST00000513678.5:ENST00000513121.1:ENST00000504045.5:ENST00000504311.5:ENST00000502499.5:ENST00000510056.5:ENST00000511249.5:ENST00000394805.8:ENST00000507860.1:ENST00000509918.5:ENST00000503811.5:ENST00000511978.5:ENST00000618441.5:ENST00000508689.1:ENST00000514528.5:ENST00000504643.5:ENST00000514488.1:ENST00000503340.1:ENST00000504023.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	77	2	2.17347	2.33068	2.48789	0.010447	0.00256502	0.0855102	0.0466761
chr1	67423115	67423213	477556	0	-	0.520408	(0.515,0.57]	chr1	57477	26	INTRON	INTRON	SERBP1	ENSG00000142864.15	ENST00000370994.8:ENST00000361219.11:ENST00000370995.6:ENST00000370990.5:ENST00000493607.1:ENST00000484880.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	19	199	2	2.22997	2.33065	2.43133	2.39085e-4	2.23515e-4	0.0142132	0.0131533
chr10	133294069	133294169	4717521	0	-	0.4	(0.378,0.408]	chr10	435472	3	SS3_PROX	SS3_PROX:INTRON	TUBGCP2	ENSG00000130640.15	ENST00000252936.8:ENST00000682123.1:ENST00000683612.1:ENST00000683786.1:ENST00000682515.1:ENST00000682905.1:ENST00000682256.1:ENST00000684478.1:ENST00000682161.1:ENST00000682332.1:ENST00000684487.1:ENST00000683673.1:ENST00000682093.1:ENST00000683014.1:ENST00000682631.1:ENST00000683829.1:ENST00000683060.1:ENST00000683383.1:ENST00000682990.1:ENST00000417178.7:ENST00000482278.5:ENST00000543663.6:ENST00000682712.1:ENST00000683704.1:ENST00000683552.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	53	2	2.30961	2.330645	2.35168	0.055088	0.0046563	0.165463	0.0629753
chr14	30622762	30622862	5675027	0	+	0.45	(0.44,0.476]	chr14	540609	3	SS5_PROX	SS5_PROX:INTRON	SCFD1	ENSG00000092108.22	ENST00000678760.1:ENST00000677690.1:ENST00000678124.1:ENST00000678716.1:ENST00000678402.1:ENST00000679153.1:ENST00000678516.1:ENST00000678802.1:ENST00000679096.1:ENST00000679102.1:ENST00000678475.1:ENST00000676509.1:ENST00000676750.1:ENST00000679165.1:ENST00000676658.1:ENST00000678399.1:ENST00000678185.1:ENST00000677027.1:ENST00000678006.1:ENST00000677413.1:ENST00000555259.5:ENST00000554437.6:ENST00000676834.1:ENST00000678858.1:ENST00000553693.6:ENST00000676914.1:ENST00000676465.1:ENST00000676812.1:ENST00000678669.1:ENST00000676520.1:ENST00000676876.1:ENST00000677617.1:ENST00000676954.1:ENST00000677456.1:ENST00000678735.1:ENST00000679342.1:ENST00000678637.1:ENST00000469043.2:ENST00000677176.1:ENST00000557076.6:ENST00000677637.1:ENST00000677974.1:ENST00000458591.7:ENST00000484733.6:ENST00000556768.5:ENST00000544052.6:ENST00000463622.6:ENST00000557713.5:ENST00000677445.1:ENST00000676674.1:ENST00000677340.1:ENST00000311943.11:ENST00000679075.1:ENST00000678396.1:ENST00000676473.1:ENST00000396629.6:ENST00000678579.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	55	2	2.14573	2.330635	2.51554	0.0238593	0.00777207	0.129075	0.0757731
chr19	45671957	45672057	7080464	0	+	0.39	(0.378,0.408]	chr19	708299	2	SS5_PROX	SS5_PROX:INTRON	GIPR	ENSG00000010310.9	ENST00000590918.6:ENST00000652180.1:ENST00000263281.7:ENST00000585889.1:ENST00000304207.12	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	57	2	1.51223	2.330575	3.14892	0.051139	0.00499984	0.176696	0.0617433
chr8	127924261	127924361	3861357	0	+	0.3	(0.28,0.32]	chr8	355450	72	INTRON	INTRON	PVT1	ENSG00000249859.13	ENST00000667305.1:ENST00000690350.1:ENST00000653522.1:ENST00000664214.1:ENST00000664139.1:ENST00000661830.1:ENST00000657289.1:ENST00000504719.7:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000656880.1:ENST00000660200.1:ENST00000669132.1:ENST00000657211.1:ENST00000653845.1:ENST00000517525.2:ENST00000665856.1:ENST00000651587.1:ENST00000692980.1:ENST00000666353.1:ENST00000657183.1:ENST00000654324.1:ENST00000658556.1:ENST00000657693.1:ENST00000666080.1:ENST00000667539.1:ENST00000521951.1:ENST00000524165.6:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000664293.1:ENST00000657297.1:ENST00000662410.1:ENST00000670795.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000654091.1:ENST00000523328.6:ENST00000657356.1:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000662061.1:ENST00000667204.1:ENST00000656491.1:ENST00000667714.1:ENST00000654105.1:ENST00000665721.1:ENST00000518528.2:ENST00000669416.1:ENST00000660438.1:ENST00000661160.1:ENST00000659326.1:ENST00000665246.1:ENST00000657384.1:ENST00000666842.1:ENST00000517790.2:ENST00000522963.6:ENST00000654369.1:ENST00000661625.1:ENST00000657596.1:ENST00000664995.1:ENST00000656532.1:ENST00000661988.1:ENST00000670714.1:ENST00000669951.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000656693.1:ENST00000668123.1:ENST00000666776.1:ENST00000664299.1:ENST00000669272.1:ENST00000659912.1:ENST00000670532.1:ENST00000660896.1:ENST00000667149.1:ENST00000656396.1:ENST00000523068.2:ENST00000521122.2:ENST00000520913.2:ENST00000519481.6:ENST00000651568.1:ENST00000669082.1:ENST00000665166.1:ENST00000656948.1:ENST00000671088.1:ENST00000664924.1:ENST00000670204.1:ENST00000652695.1:ENST00000670602.1:ENST00000651664.1:ENST00000517838.6:ENST00000663461.1:ENST00000513868.6:ENST00000670626.1:ENST00000653406.1:ENST00000658242.1:ENST00000669407.1	lncRNA	lncRNA	lncRNA	lncRNA	3	52	2	2.05458	2.33057	2.60656	0.0381508	0.0256827	0.141764	0.133676
chr10	43404623	43404723	4605461	0	-	0.51	(0.476,0.515]	chr10	424262	74	INTRON	INTRON	HNRNPF	ENSG00000169813.17	ENST00000356053.7:ENST00000357065.8:ENST00000682386.1:ENST00000337970.7	protein_coding	protein_coding	protein_coding	protein_coding	14	174	2	2.25939	2.3304099999999996	2.40143	7.40627e-4	4.84271e-4	0.0248934	0.0203841
chr12	123460100	123460200	5242862	0	+	0.58	(0.57,1]	chr12	498235	2	SS5_PROX	SS5_PROX:INTRON	SNRNP35	ENSG00000184209.15	ENST00000527158.2:ENST00000529201.1:ENST00000526639.3:ENST00000412157.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	26	2	1.74185	2.3303700000000003	2.91889	0.0401765	0.00719009	0.143911	0.0756118
chr19	47137581	47137679	7083936	0	+	0.571429	(0.57,1]	chr19	708741	16	INTRON	INTRON	SAE1	ENSG00000142230.13	ENST00000594144.5:ENST00000594526.5:ENST00000597808.5:ENST00000413379.7:ENST00000600706.5:ENST00000270225.12:ENST00000598840.5:ENST00000414294.6:ENST00000600753.1:ENST00000660039.1:ENST00000664120.1:ENST00000596995.1:ENST00000392776.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	26	2	1.74185	2.3303700000000003	2.91889	0.0401765	0.00719009	0.143911	0.0756118
chrX	111686674	111686763	7702071	0	+	0.235955	[0,0.28]	chrX	788213	1	INTRON	INTRON	ALG13	ENSG00000101901.12	ENST00000487141.5:ENST00000371979.7:ENST00000394780.8:ENST00000251943.8:ENST00000610588.4:ENST00000621367.4:ENST00000622997.3:ENST00000624161.3:ENST00000636363.1:ENST00000624881.3:ENST00000468657.5:ENST00000473389.5:ENST00000482374.5:ENST00000492038.5:ENST00000495283.5:ENST00000486353.5:ENST00000623144.3:ENST00000470971.5:ENST00000489033.5:ENST00000623255.1:ENST00000623148.3:ENST00000471924.5:ENST00000436609.5:ENST00000482742.5:ENST00000623189.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	58	2	1.85666	2.33031	2.80396	0.0660997	0.0161429	0.181924	0.109464
chr15	92923525	92923623	6103927	0	+	0.428571	(0.408,0.44]	chr15	581409	17	INTRON	INTRON	ENSG00000279765:CHD2	ENSG00000279765.3:ENSG00000173575.22	ENST00000629685.2:ENST00000630790.1:ENST00000626874.2:ENST00000394196.9:ENST00000635856.1:ENST00000420239.7:ENST00000628375.2:ENST00000625990.3:ENST00000626782.2:ENST00000629136.1:ENST00000636861.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	16	174	2	1.88136	2.330265	2.77917	0.00164947	3.60351e-4	0.0375204	0.0175741
chr16	53113323	53113423	6351303	0	+	0.38	(0.378,0.408]	chr16	609670	137	INTRON	INTRON	CHD9	ENSG00000177200.18	ENST00000447540.6:ENST00000566029.5:ENST00000615216.4:ENST00000561869.1:ENST00000565832.5:ENST00000564582.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	43	2	2.11194	2.330215	2.54849	0.0292534	0.0273196	0.136494	0.128055
chr2	61459667	61459766	1130443	0	-	0.585859	(0.57,1]	chr2	121499	385	INTRON	INTRON	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000453133.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	39	2	2.00566	2.3301800000000004	2.6547	0.00889324	0.00346848	0.0798039	0.0539802
chr10	927030	927130	4542541	0	-	0.36	(0.35,0.378]	chr10	419310	22	INTRON	INTRON	LARP4B	ENSG00000107929.16	ENST00000316157.8:ENST00000690516.1:ENST00000476529.5:ENST00000406525.6:ENST00000481118.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	15	183	2	1.62307	2.33018	3.03729	0.0100724	5.97813e-5	0.084988	0.00636382
chr1	100042374	100042473	171646	0	+	0.424242	(0.408,0.44]	chr1	18589	37	INTRON	INTRON	ENSG00000283761:MFSD14A	ENSG00000283761.1:ENSG00000156875.14	ENST00000638792.1:ENST00000638968.1:ENST00000639040.1:ENST00000639037.1:ENST00000638779.1:ENST00000639171.1:ENST00000640238.1:ENST00000640357.1:ENST00000370152.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	66	2	1.64062	2.33002	3.01942	0.0557275	7.74413e-4	0.165463	0.0256083
chr20	1332077	1332177	7220962	0	+	0.44	(0.408,0.44]	chr20	733750	59	INTRON	INTRON	SDCBP2-AS1	ENSG00000234684.8	ENST00000665859.2:ENST00000609470.6:ENST00000609745.1:ENST00000658491.1:ENST00000607947.1:ENST00000670879.1:ENST00000609285.6:ENST00000446423.2:ENST00000653665.1	lncRNA	lncRNA	lncRNA	lncRNA	3	42	2	2.16746	2.33002	2.49258	0.0314608	0.024436	0.144381	0.12011
chr10	5893494	5893593	4385210	0	+	0.434343	(0.408,0.44]	chr10	404622	20	INTRON	INTRON	FBH1	ENSG00000134452.20	ENST00000397269.7:ENST00000362091.9:ENST00000470089.5:ENST00000462507.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	54	2	2.05947	2.329975	2.60048	0.0333232	0.00484324	0.134145	0.0640618
chr15	64639884	64639984	6045884	0	+	0.41	(0.408,0.44]	chr15	575702	165	INTRON	INTRON	ZNF609	ENSG00000180357.10	ENST00000326648.5:ENST00000558680.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	54	2	2.05947	2.329975	2.60048	0.0333232	0.00484324	0.134145	0.0640618
chr3	183748709	183748808	1580806	0	+	0.434343	(0.408,0.44]	chr3	163068	6	INTRON	INTRON	YEATS2	ENSG00000163872.16	ENST00000305135.10	protein_coding	protein_coding	protein_coding	protein_coding	4	54	2	2.05947	2.329975	2.60048	0.0333232	0.00484324	0.134145	0.0640618
chr7	12690576	12690671	3285877	0	+	0.389474	(0.378,0.408]	chr7	305191	19	UTR3	UTR3:EXON_MRNA	ARL4A	ENSG00000122644.13	ENST00000396663.2:ENST00000651779.1	protein_coding	protein_coding	protein_coding	protein_coding	8	103	2	2.32375	2.3299700000000003	2.33619	0.00607113	0.00134834	0.0676501	0.0338207
chr20	38434203	38434303	7342307	0	-	0.49	(0.476,0.515]	chr20	748331	3	SS5_PROX	SS5_PROX:INTRON	SNHG17	ENSG00000196756.14	ENST00000654008.2:ENST00000658076.1:ENST00000662982.2:ENST00000456953.7:ENST00000654183.2:ENST00000663540.2:ENST00000651115.2:ENST00000660885.2:ENST00000662213.1:ENST00000665233.2:ENST00000666268.2:ENST00000665735.1:ENST00000660558.2:ENST00000691280.1:ENST00000658488.2:ENST00000688336.1:ENST00000668054.2:ENST00000690441.1:ENST00000655520.2:ENST00000687490.1:ENST00000664626.1:ENST00000658051.1:ENST00000668042.1:ENST00000686971.1:ENST00000657868.1:ENST00000689917.1:ENST00000664073.2:ENST00000653697.1:ENST00000656320.1:ENST00000686814.1:ENST00000417578.7:ENST00000436764.7:ENST00000668482.2:ENST00000671249.1:ENST00000693250.1:ENST00000691368.1:ENST00000693227.1:ENST00000690361.1:ENST00000670051.1:ENST00000667912.1:ENST00000693665.1:ENST00000665181.1:ENST00000687532.1:ENST00000691386.1:ENST00000693684.1:ENST00000666331.1:ENST00000669480.1:ENST00000658905.1:ENST00000661252.1:ENST00000669137.1:ENST00000688133.1:ENST00000689414.1:ENST00000691314.1:ENST00000669033.1:ENST00000686145.1:ENST00000656023.1:ENST00000692262.1:ENST00000414142.5:ENST00000670958.1:ENST00000657216.2:ENST00000664636.1:ENST00000657843.1:ENST00000666419.1:ENST00000413755.5:ENST00000424235.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	6	80	2	2.32001	2.329955	2.3399	0.0136217	0.00275491	0.101682	0.0469265
chr9	36595071	36595171	4116696	0	+	0.44	(0.408,0.44]	chr9	375262	3	SS5_PROX	SS5_PROX:INTRON	MELK	ENSG00000165304.8	ENST00000543751.5:ENST00000536860.5:ENST00000541717.4:ENST00000536329.5:ENST00000627766.2:ENST00000298048.7:ENST00000536987.5:ENST00000545008.5:ENST00000495529.5:ENST00000489766.5:ENST00000625974.2:ENST00000487398.3:ENST00000626154.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	65	2	1.96534	2.329955	2.69457	0.0216499	0.00331036	0.11491	0.0527031
chr16	536437	536535	6272294	0	+	0.653061	(0.57,1]	chr16	598562	3	SS5_PROX	SS5_PROX:INTRON	CAPN15	ENSG00000103326.12	ENST00000219611.7:ENST00000562370.5:ENST00000567216.5:ENST00000568988.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	46	2	2.22366	2.32995	2.43624	0.00344378	0.00279586	0.0539802	0.0469265
chr4	1946547	1946646	1911341	0	+	0.373737	(0.35,0.378]	chr4	191792	43	UTR3	UTR3:EXON_MRNA:INTRON	NSD2	ENSG00000109685.19	ENST00000508803.6:ENST00000398261.6:ENST00000382891.9:ENST00000353275.9:ENST00000382892.6:ENST00000382895.7:ENST00000312087.10:ENST00000503128.5:ENST00000677559.1:ENST00000678714.1:ENST00000511904.1:ENST00000513726.5:ENST00000482415.6:ENST00000514329.5:ENST00000502425.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	52	2	1.82281	2.32995	2.83709	0.0316938	0.01435	0.144635	0.0966737
chr1	203809409	203809509	296818	0	+	0.53	(0.515,0.57]	chr1	34134	60	INTRON	INTRON	ZC3H11A:ZBED6	ENSG00000058673.17:ENSG00000257315.3	ENST00000367210.3:ENST00000453771.5:ENST00000432282.5:ENST00000638800.1:ENST00000367214.5:ENST00000639812.1:ENST00000367212.7:ENST00000332127.8:ENST00000550078.2:ENST00000495527.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	44	2	2.31902	2.329945	2.34087	0.0469761	0.00493032	0.151917	0.0646039
chr5	119276103	119276203	2461671	0	+	0.41	(0.408,0.44]	chr5	235842	68	INTRON	INTRON	TNFAIP8	ENSG00000145779.8	ENST00000274456.6:ENST00000388882.5	protein_coding	protein_coding	protein_coding	protein_coding	5	58	2	1.69979	2.32993	2.96007	0.0310346	0.00753901	0.13151	0.0773151
chr10	5903275	5903375	4385312	0	+	0.32	(0.28,0.32]	chr10	404637	1	SS5_PROX	SS5_PROX:INTRON	FBH1	ENSG00000134452.20	ENST00000397269.7:ENST00000362091.9:ENST00000470089.5:ENST00000462507.1:ENST00000379999.6:ENST00000469009.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	139	2	1.79593	2.32991	2.86389	0.0147274	5.73871e-4	0.0983813	0.0217493
chr6	135034462	135034561	3225264	0	-	0.50505	(0.476,0.515]	chr6	299841	74	INTRON	INTRON	HBS1L	ENSG00000112339.15	ENST00000367837.10:ENST00000415177.6:ENST00000367826.6:ENST00000533274.5:ENST00000526100.5:ENST00000314674.7:ENST00000524715.5:ENST00000529882.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	88	2	2.24654	2.3298699999999997	2.4132	0.00417094	0.00346427	0.0570595	0.0539802
chr8	123338810	123338910	4042036	0	-	0.47	(0.44,0.476]	chr8	368681	1	SS5_PROX	SS5_PROX:INTRON	ATAD2	ENSG00000156802.13	ENST00000287394.10:ENST00000517666.5:ENST00000521903.5:ENST00000519124.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	124	2	2.00861	2.32986	2.65111	0.00380912	6.64549e-4	0.0562562	0.0234958
chr11	33159499	33159599	4940960	0	-	0.6	(0.57,1]	chr11	462884	23	INTRON	INTRON	CSTF3	ENSG00000176102.13	ENST00000323959.9:ENST00000524827.6:ENST00000526480.1:ENST00000438862.6:ENST00000431742.2:ENST00000524556.1:ENST00000524775.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	33	2	1.43111	2.329835	3.22856	0.0484405	0.00205928	0.153635	0.0420839
chr21	6258444	6258544	7425223	0	-	0.32	(0.28,0.32]	chr21	757453	32	INTRON	INTRON	ENSG00000275496	ENSG00000275496.4	ENST00000621924.4:ENST00000617746.4:ENST00000624446.1:ENST00000623405.3:ENST00000623575.3:ENST00000623506.1	lncRNA	lncRNA	lncRNA	lncRNA	4	69	2	2.28998	2.329805	2.36963	0.0166401	0.0157022	0.110511	0.101453
chr1	207695251	207695348	304453	0	+	0.402062	(0.378,0.408]	chr1	35020	1	INTRON	INTRON	CR1L	ENSG00000197721.17	ENST00000508064.7:ENST00000530905.1:ENST00000294997.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	84	2	2.3043	2.329785	2.35527	0.0121511	0.0035117	0.0963966	0.0525467
chr11	105416154	105416254	5029382	0	-	0.4	(0.378,0.408]	chr11	474017	1475	INTRON	INTRON	CARD18	ENSG00000255501.3	ENST00000649856.1:ENST00000528811.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	86	2	1.67662	2.329785	2.98295	0.0243251	9.47389e-4	0.12011	0.0282007
chr7	99406446	99406545	3583302	0	-	0.323232	(0.32,0.35]	chr7	333755	11	INTRON	INTRON	PDAP1	ENSG00000106244.13	ENST00000350498.8:ENST00000426447.3:ENST00000626285.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	72	2	1.94669	2.32969	2.71269	0.0181461	0.0154073	0.114853	0.100659
chr2	174206475	174206575	1270432	0	-	0.37	(0.35,0.378]	chr2	134282	641	INTRON	INTRON	OLA1	ENSG00000138430.16	ENST00000284719.8:ENST00000344357.9:ENST00000428402.6:ENST00000409546.5:ENST00000429575.1	protein_coding	protein_coding	protein_coding	protein_coding	3	44	2	1.93432	2.32965	2.72498	0.0481438	0.0168499	0.153019	0.11068
chr5	82005264	82005363	2403035	0	+	0.363636	(0.35,0.378]	chr5	232116	129	INTRON	INTRON	ATG10	ENSG00000152348.16	ENST00000282185.8:ENST00000355178.8:ENST00000458350.7:ENST00000513443.5:ENST00000504770.5:ENST00000513634.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	44	2	1.93432	2.32965	2.72498	0.0481438	0.0168499	0.153019	0.11068
chr17	81582823	81582922	6849047	0	-	0.626263	(0.57,1]	chr17	678158	104	INTRON	INTRON	NPLOC4	ENSG00000182446.14	ENST00000331134.11:ENST00000374747.9:ENST00000574897.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	69	2	1.65102	2.329585	3.00815	0.0121756	3.19811e-5	0.0910127	0.00451543
chr9	112231676	112231755	4316932	0	-	0.43038	(0.408,0.44]	chr9	397028	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PTBP3	ENSG00000119314.16	ENST00000334318.10:ENST00000458258.5:ENST00000374257.6:ENST00000374255.6:ENST00000343327.6	protein_coding	protein_coding	protein_coding	protein_coding	6	74	2	2.00961	2.329525	2.64944	0.00931007	0.00481947	0.0855292	0.060277
chr8	92778776	92778875	3989893	0	-	0.424242	(0.408,0.44]	chr8	365352	133	INTRON	INTRON	FLJ46284	ENSG00000248858.7	ENST00000504861.2	lncRNA	lncRNA	lncRNA	lncRNA	8	99	2	2.17577	2.329515	2.48326	0.00324772	0.00269594	0.0508595	0.0479115
chr15	92916994	92917094	6103861	0	+	0.34	(0.32,0.35]	chr15	581405	16	INTRON	INTRON	ENSG00000279765:CHD2	ENSG00000279765.3:ENSG00000173575.22	ENST00000629685.2:ENST00000630790.1:ENST00000626874.2:ENST00000394196.9:ENST00000635856.1:ENST00000420239.7:ENST00000628375.2:ENST00000625990.3:ENST00000626782.2:ENST00000629136.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	84	2	1.41804	2.3294550000000003	3.24087	0.0337299	0.00420518	0.146709	0.0572185
chr11	72079523	72079621	4976832	0	-	0.479592	(0.476,0.515]	chr11	470156	24	INTRON	INTRON	NUMA1	ENSG00000137497.19	ENST00000393695.8:ENST00000358965.10:ENST00000351960.10:ENST00000613205.4:ENST00000537217.5:ENST00000540843.5:ENST00000543937.5:ENST00000368959.9:ENST00000541719.5:ENST00000366394.7:ENST00000541641.5:ENST00000537905.5:ENST00000535111.5:ENST00000546131.1:ENST00000543450.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	91	2	2.29359	2.329355	2.36512	0.00584957	0.00246559	0.0689807	0.0446195
chr8	141421860	141421955	3878682	0	+	0.410526	(0.408,0.44]	chr8	356216	6	UTR5	UTR5:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PTP4A3	ENSG00000184489.13	ENST00000520105.5:ENST00000521578.6:ENST00000523147.5:ENST00000329397.6:ENST00000349124.3:ENST00000680615.1:ENST00000681443.1	protein_coding	protein_coding	protein_coding	protein_coding	25	304	2	2.00567	2.32931	2.65295	5.23097e-4	4.99593e-5	0.020520300000000002	0.00611521
chr16	89392175	89392275	6542607	0	-	0.48	(0.476,0.515]	chr16	634240	187	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000647238.1:ENST00000644045.1:ENST00000643147.1:ENST00000644139.1:ENST00000568512.6:ENST00000566973.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	64	2	2.29359	2.329295	2.365	0.0128901	0.00584957	0.0926667	0.0689807
chr1	70223494	70223593	142612	0	+	0.383838	(0.378,0.408]	chr1	15978	3	INTRON	INTRON	SRSF11	ENSG00000116754.14	ENST00000370951.5:ENST00000463877.1:ENST00000687381.1:ENST00000370950.7:ENST00000475204.5:ENST00000370949.2:ENST00000395136.7:ENST00000473950.5:ENST00000469170.5:ENST00000486667.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	12	136	2	1.787	2.32927	2.87154	0.00474983	6.11179e-4	0.0635784	0.0227393
chr10	86762515	86762615	4479456	0	+	0.55	(0.515,0.57]	chr10	412292	52	INTRON	INTRON	BMPR1A	ENSG00000107779.14	ENST00000638429.1:ENST00000372037.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	47	2	1.62814	2.329255	3.03037	0.035203	0.00608732	0.150193	0.0676501
chrX	18351191	18351291	7771024	0	-	0.52	(0.515,0.57]	chrX	794213	167	INTRON	INTRON	SCML2	ENSG00000102098.19	ENST00000251900.9	protein_coding	protein_coding	protein_coding	protein_coding	4	46	2	2.08547	2.329225	2.57298	0.0289426	0.00506495	0.1274	0.0646039
chr7	128581191	128581291	3407860	0	+	0.38	(0.378,0.408]	chr7	318358	7	INTRON	INTRON	ENSG00000280828:ENSG00000242588	ENSG00000280828.1:ENSG00000242588.6	ENST00000479267.2:ENST00000605862.5	lncRNA	lncRNA	lncRNA:unprocessed_pseudogene	lncRNA:unprocessed_pseudogene	9	112	2	1.94426	2.32922	2.71418	0.00520377	0.00126468	0.0655609	0.0325134
chr19	49159433	49159530	7089048	0	+	0.494845	(0.476,0.515]	chr19	709754	13	UTR3	UTR3:EXON_MRNA:INTRON	TRPM4	ENSG00000130529.16	ENST00000598691.5:ENST00000598697.5:ENST00000252826.10:ENST00000595519.5:ENST00000599628.5:ENST00000427978.6:ENST00000598502.5:ENST00000596338.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	132	2	2.22022	2.329215	2.43821	0.00177508	9.15633e-4	0.0378678	0.027822
chr18	36132737	36132837	6891443	0	+	0.41	(0.408,0.44]	chr18	682953	1	SS3_PROX	SS3_PROX:INTRON	ELP2	ENSG00000134759.14	ENST00000543127.5:ENST00000544267.5:ENST00000351393.10:ENST00000541190.5:ENST00000545632.5:ENST00000442325.6:ENST00000358232.11:ENST00000423854.6:ENST00000539560.5:ENST00000535488.5:ENST00000540135.5:ENST00000542430.5:ENST00000350494.10:ENST00000542824.5:ENST00000540799.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	108	2	2.03695	2.32921	2.62147	0.00333392	0.00180223	0.0528877	0.0382461
chr2	8986395	8986495	1063396	0	-	0.52	(0.515,0.57]	chr2	113387	116	INTRON	INTRON	MBOAT2	ENSG00000143797.12	ENST00000305997.8:ENST00000486484.5:ENST00000477073.5:ENST00000462696.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	47	2	1.56838	2.3292	3.09002	0.0424458	0.00491099	0.161763	0.0609494
chr6	89743049	89743149	3161235	0	-	0.45	(0.44,0.476]	chr6	294728	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	MDN1	ENSG00000112159.12	ENST00000369393.8:ENST00000629399.2	protein_coding	protein_coding	protein_coding	protein_coding	4	54	2	2.27304	2.329115	2.38519	0.0158915	0.012193	0.109464	0.0910127
chr11	46566339	46566439	4946983	0	-	0.53	(0.515,0.57]	chr11	463525	169	INTRON	INTRON	AMBRA1	ENSG00000110497.15	ENST00000683756.1:ENST00000534300.5:ENST00000533727.5:ENST00000314845.7:ENST00000458649.6:ENST00000528950.1:ENST00000531542.1:ENST00000526606.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	48	2	1.89462	2.32908	2.76354	0.0147344	0.0139002	0.10247	0.0983813
chr16	15665061	15665161	6307032	0	+	0.53	(0.515,0.57]	chr16	603418	2	SS5_PROX	SS5_PROX:INTRON	NDE1	ENSG00000072864.16	ENST00000396355.5:ENST00000674888.1:ENST00000675171.1:ENST00000675951.1:ENST00000674900.1:ENST00000674588.1:ENST00000674538.1:ENST00000396354.6:ENST00000675926.1:ENST00000570727.5:ENST00000573203.5:ENST00000674995.1:ENST00000674554.1:ENST00000674581.1:ENST00000577101.6:ENST00000572756.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	48	2	1.89462	2.32908	2.76354	0.0147344	0.0139002	0.10247	0.0983813
chr15	52032467	52032566	6029155	0	+	0.373737	(0.35,0.378]	chr15	574427	42	INTRON	INTRON	MAPK6	ENSG00000069956.14	ENST00000560802.1:ENST00000691380.1:ENST00000558063.5:ENST00000560254.1:ENST00000681888.1:ENST00000261845.7:ENST00000680066.1:ENST00000680777.1:ENST00000558100.1:ENST00000680652.1:ENST00000558841.1:ENST00000558891.1:ENST00000560774.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	45	2	2.1617	2.329065	2.49643	0.0771502	0.00752974	0.196285	0.0773151
chr3	172158363	172158462	1560738	0	+	0.373737	(0.35,0.378]	chr3	161551	94	INTRON	INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000421757.5:ENST00000469491.5:ENST00000336824.8:ENST00000423424.5:ENST00000416957.5:ENST00000478016.1:ENST00000443501.1:ENST00000476794.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	45	2	2.1617	2.329065	2.49643	0.0771502	0.00752974	0.196285	0.0773151
chr1	8868157	8868257	374190	0	-	0.36	(0.35,0.378]	chr1	43623	1	SS3_PROX	SS3_PROX:INTRON	ENO1	ENSG00000074800.16	ENST00000234590.10:ENST00000647408.1:ENST00000464920.2:ENST00000646370.2:ENST00000645609.1:ENST00000645600.1:ENST00000497492.1:ENST00000646660.1:ENST00000646680.1:ENST00000646906.1:ENST00000646156.1:ENST00000643438.1:ENST00000489867.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	20	268	2	2.27218	2.32905	2.38592	3.92145e-4	2.44141e-4	0.0184748	0.013812
chr8	20214243	20214339	3710778	0	+	0.375	(0.35,0.378]	chr8	344351	15	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	ATP6V1B2	ENSG00000147416.11	ENST00000276390.7:ENST00000523482.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	52	2	1.87586	2.32899	2.78212	0.0268864	0.0168532	0.135275	0.103549
chr21	34866271	34866371	7447047	0	-	0.39	(0.378,0.408]	chr21	759849	63	INTRON	INTRON	RUNX1	ENSG00000159216.19	ENST00000300305.7:ENST00000675419.1:ENST00000437180.5:ENST00000344691.8:ENST00000482318.5:ENST00000399240.5:ENST00000358356.9:ENST00000399237.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	120	2	1.61904	2.32896	3.03888	0.00856143	0.00102794	0.083729	0.029231300000000002
chr2	172585079	172585178	920197	0	+	0.474747	(0.44,0.476]	chr2	101374	139	INTRON	INTRON	PDK1	ENSG00000152256.14	ENST00000392571.6:ENST00000410055.5:ENST00000282077.8:ENST00000466437.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	58	2	2.12136	2.32888	2.5364	0.0309324	0.00591413	0.13151	0.0694038
chr22	41283506	41283605	7591127	0	-	0.282828	(0.28,0.32]	chr22	777373	11	INTRON	INTRON	RANGAP1	ENSG00000100401.20	ENST00000356244.8:ENST00000405486.5:ENST00000422838.1	protein_coding	protein_coding	protein_coding	protein_coding	5	83	2	2.18092	2.328815	2.47671	0.0271832	0.00327955	0.123904	0.0527031
chr16	67960684	67960782	6506207	0	-	0.510204	(0.476,0.515]	chr16	629863	23	INTRON	INTRON	SLC12A4	ENSG00000124067.17	ENST00000422611.6:ENST00000316341.8:ENST00000572037.5:ENST00000541864.6:ENST00000570802.5:ENST00000576616.5:ENST00000537830.6:ENST00000573023.6:ENST00000576377.1:ENST00000571299.5:ENST00000572010.5:ENST00000576462.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	48	2	1.58335	2.328785	3.07422	0.0640461	0.00506023	0.177882	0.0646039
chr15	64072655	64072747	6202588	0	-	0.304348	(0.28,0.32]	chr15	591564	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	CIAO2A	ENSG00000166797.11	ENST00000300030.8:ENST00000558779.1:ENST00000380290.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	82	2	2.25298	2.32878	2.40458	0.0141047	0.00791652	0.0959618	0.0797304
chr10	125080899	125080999	4713538	0	-	0.36	(0.35,0.378]	chr10	434897	414	INTRON	INTRON	CTBP2	ENSG00000175029.17	ENST00000337195.9:ENST00000411419.6:ENST00000494626.6:ENST00000531469.5:ENST00000460976.5:ENST00000476817.1:ENST00000530884.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	108	2	1.82648	2.3287500000000003	2.83102	0.0150408	5.35542e-4	0.0994339	0.0209215
chr6	35874132	35874232	3088346	0	-	0.28	[0,0.28]	chr6	288856	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	SRPK1	ENSG00000096063.16	ENST00000373825.7:ENST00000423325.6:ENST00000346162.10:ENST00000361690.7:ENST00000510290.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	81	2	1.43498	2.32864	3.2223	0.0775714	0.00422777	0.196285	0.0595466
chr5	112161024	112161124	2451540	0	+	0.59	(0.57,1]	chr5	234897	6	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	EPB41L4A-AS1	ENSG00000224032.8	ENST00000663232.1:ENST00000427306.3:ENST00000508590.2:ENST00000688370.1:ENST00000442823.3:ENST00000690733.1:ENST00000413221.7	lncRNA	lncRNA	lncRNA	lncRNA	7	46	2	2.161	2.328605	2.49621	0.00462668	0.00209832	0.062717	0.0413494
chr2	71374061	71374161	807446	0	+	0.47	(0.44,0.476]	chr2	90195	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ZNF638:ENSG00000281195	ENSG00000075292.19:ENSG00000281195.1	ENST00000410075.5:ENST00000409544.5:ENST00000264447.9:ENST00000601581.3:ENST00000434786.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA:processed_transcript	12	131	2	1.8855	2.328595	2.77169	0.00287036	8.89744e-4	0.0494641	0.0274757
chr16	85578041	85578141	6415612	0	+	0.63	(0.57,1]	chr16	615470	213	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	6	43	2	1.89351	2.328535	2.76356	0.0255126	5.18582e-4	0.133676	0.0209322
chr2	177321312	177321410	1276427	0	-	0.316327	(0.28,0.32]	chr2	134749	30	INTRON	INTRON	NFE2L2:ENSG00000213963	ENSG00000116044.16:ENSG00000213963.6	ENST00000464747.5:ENST00000397057.6:ENST00000456746.5:ENST00000430416.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	5	83	2	2.02902	2.328535	2.62805	0.0174423	0.00681001	0.11269	0.0711884
chr15	58606675	58606774	6192066	0	-	0.424242	(0.408,0.44]	chr15	589892	66	INTRON	INTRON	ADAM10	ENSG00000137845.15	ENST00000260408.8:ENST00000402627.5:ENST00000561288.1:ENST00000482945.5:ENST00000396136.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	55	2	1.70409	2.328525	2.95296	0.028108	0.00929354	0.137011	0.0817766
chr7	155734530	155734630	3452806	0	+	0.34	(0.32,0.35]	chr7	322702	157	INTRON	INTRON	RBM33	ENSG00000184863.11	ENST00000401878.8:ENST00000307403.6:ENST00000440108.5:ENST00000392761.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	64	2	2.19668	2.328475	2.46027	0.021398	0.0108973	0.123719	0.0873034
chr8	67193085	67193180	3777985	0	+	0.421053	(0.408,0.44]	chr8	350483	4	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CSPP1	ENSG00000104218.16	ENST00000676113.1:ENST00000675306.2:ENST00000262210.11:ENST00000678017.1:ENST00000675869.1:ENST00000678542.1:ENST00000677619.1:ENST00000676605.1:ENST00000676471.1:ENST00000677256.1:ENST00000676847.1:ENST00000677009.1:ENST00000676317.1:ENST00000677592.1:ENST00000676573.1:ENST00000678318.1:ENST00000677473.1:ENST00000674993.1:ENST00000679226.1:ENST00000676882.1:ENST00000675955.1:ENST00000677430.1:ENST00000678616.1:ENST00000679112.1:ENST00000678645.1:ENST00000677845.1:ENST00000676858.1:ENST00000678747.1:ENST00000519668.1:ENST00000677855.1:ENST00000677052.1:ENST00000679274.1:ENST00000678635.1:ENST00000676804.1:ENST00000679295.1:ENST00000677964.1:ENST00000676968.1:ENST00000678895.1:ENST00000678723.1:ENST00000677131.1:ENST00000521324.3:ENST00000675990.1:ENST00000521168.5:ENST00000677697.1:ENST00000677538.1:ENST00000676980.1:ENST00000678834.1:ENST00000679322.1:ENST00000677938.1:ENST00000678685.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	55	2	1.55035	2.32838	3.10641	0.0455214	0.00555646	0.164236	0.0648867
chr1	6547973	6548072	368055	0	-	0.434343	(0.408,0.44]	chr1	43225	24	INTRON	INTRON	NOL9	ENSG00000162408.11	ENST00000377705.6	protein_coding	protein_coding	protein_coding	protein_coding	5	65	2	2.08376	2.328355	2.57295	0.0129886	0.00640423	0.0991656	0.0694534
chr15	89246733	89246832	6095756	0	+	0.424242	(0.408,0.44]	chr15	580074	5	INTRON	INTRON	FANCI	ENSG00000140525.20	ENST00000674831.1:ENST00000300027.12:ENST00000568670.5:ENST00000567891.5:ENST00000310775.12:ENST00000696717.1:ENST00000676003.1:ENST00000565255.5:ENST00000564920.5:ENST00000696718.1:ENST00000447611.6:ENST00000570110.1:ENST00000696719.1:ENST00000567996.5:ENST00000563250.5:ENST00000565522.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	89	2	2.32619	2.32829	2.33039	0.00598147	0.00239266	0.0674604	0.0450826
chr14	31013346	31013445	5857743	0	-	0.323232	(0.32,0.35]	chr14	556508	490	INTRON	INTRON	STRN3	ENSG00000196792.12	ENST00000355683.9:ENST00000357479.10:ENST00000555358.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	106	2	2.02531	2.32823	2.63115	0.00608073	0.00401813	0.0676501	0.0578189
chr1	174973380	174973480	265298	0	+	0.43	(0.408,0.44]	chr1	30941	36	INTRON	INTRON	RABGAP1L	ENSG00000152061.24	ENST00000681986.1:ENST00000325589.9:ENST00000469553.6:ENST00000367687.5:ENST00000347255.6:ENST00000489615.5:ENST00000465412.5:ENST00000392064.6:ENST00000367688.3:ENST00000485114.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	30	2	2.2957	2.328215	2.36073	0.0516458	0.0481658	0.176696	0.153019
chr12	113380544	113380644	5232570	0	+	0.41	(0.408,0.44]	chr12	496301	4	SS3_PROX	SS3_PROX:INTRON	PLBD2	ENSG00000151176.8	ENST00000545182.6:ENST00000280800.5	protein_coding	protein_coding	protein_coding	protein_coding	2	30	2	2.2957	2.328215	2.36073	0.0516458	0.0481658	0.176696	0.153019
chr3	198215274	198215373	1600320	0	+	0.424242	(0.408,0.44]	chr3	165920	31	INTRON	INTRON	FAM157A	ENSG00000236438.7	ENST00000634862.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	2	30	2	2.2957	2.328215	2.36073	0.0516458	0.0481658	0.176696	0.153019
chr4	1974163	1974262	1911636	0	+	0.424242	(0.408,0.44]	chr4	191852	127	INTRON	INTRON	NSD2	ENSG00000109685.19	ENST00000508803.6:ENST00000382891.9:ENST00000353275.9:ENST00000382892.6:ENST00000382895.7:ENST00000312087.10:ENST00000677559.1:ENST00000482415.6:ENST00000382888.3:ENST00000679039.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	30	2	2.2957	2.328215	2.36073	0.0516458	0.0481658	0.176696	0.153019
chr4	145146629	145146729	2255143	0	-	0.41	(0.408,0.44]	chr4	220191	2	SS3_PROX	SS3_PROX:INTRON	OTUD4	ENSG00000164164.17	ENST00000455611.6:ENST00000454497.6:ENST00000447906.8:ENST00000509517.1:ENST00000514973.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	30	2	2.2957	2.328215	2.36073	0.0516458	0.0481658	0.176696	0.153019
chr6	160994676	160994776	3024519	0	+	0.43	(0.408,0.44]	chr6	282304	22	INTRON	INTRON	MAP3K4	ENSG00000085511.20	ENST00000366919.6:ENST00000392142.9:ENST00000542952.5:ENST00000366920.6:ENST00000348824.11:ENST00000544041.5:ENST00000490904.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	30	2	2.2957	2.328215	2.36073	0.0516458	0.0481658	0.176696	0.153019
chr9	41148988	41149088	4259319	0	-	0.42	(0.408,0.44]	chr9	391932	31	INTRON	INTRON	CBWD6	ENSG00000215126.11	ENST00000613716.4:ENST00000377391.8:ENST00000456520.5:ENST00000382436.7:ENST00000494538.6:ENST00000617917.4:ENST00000613125.4:ENST00000610358.4:ENST00000486387.6:ENST00000617722.4:ENST00000467791.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	30	2	2.2957	2.328215	2.36073	0.0516458	0.0481658	0.176696	0.153019
chr9	72140172	72140272	4141170	0	+	0.41	(0.408,0.44]	chr9	377405	250	INTRON	INTRON	GDA	ENSG00000119125.17	ENST00000545168.5	protein_coding	protein_coding	protein_coding	protein_coding	2	30	2	2.2957	2.328215	2.36073	0.0516458	0.0481658	0.176696	0.153019
chr9	130839313	130839413	4215118	0	+	0.43	(0.408,0.44]	chr9	386432	34	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000393293.4:ENST00000318560.6	protein_coding	protein_coding	protein_coding	protein_coding	2	30	2	2.2957	2.328215	2.36073	0.0516458	0.0481658	0.176696	0.153019
chr16	74587785	74587885	6525139	0	-	0.5	(0.476,0.515]	chr16	631842	246	INTRON	INTRON	GLG1	ENSG00000090863.12	ENST00000205061.9:ENST00000422840.7:ENST00000447066.6:ENST00000562090.5:ENST00000567951.5:ENST00000627032.2:ENST00000565260.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	82	2	1.72573	2.3280950000000002	2.93046	0.0196488	0.00118985	0.109608	0.031662
chr1	23322658	23322757	399371	0	-	0.343434	(0.32,0.35]	chr1	47859	6	INTRON	INTRON	HNRNPR	ENSG00000125944.21	ENST00000478691.5:ENST00000302271.11:ENST00000374616.7:ENST00000374612.5:ENST00000675048.1:ENST00000606561.5:ENST00000427764.3:ENST00000463552.5:ENST00000470941.5:ENST00000476451.2	protein_coding	protein_coding	protein_coding	protein_coding	8	117	2	1.5852	2.3280849999999997	3.07097	0.0351213	1.699e-4	0.137535	0.011325
chr11	668061	668161	4889204	0	-	0.41	(0.408,0.44]	chr11	457709	79	INTRON	INTRON	DEAF1	ENSG00000177030.19	ENST00000382409.4:ENST00000527170.5:ENST00000685854.1:ENST00000683307.1:ENST00000528864.6:ENST00000525626.6:ENST00000682936.1:ENST00000690068.1:ENST00000692634.1:ENST00000687329.1:ENST00000686001.1:ENST00000689835.1:ENST00000525904.5:ENST00000530813.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	74	2	2.12303	2.32808	2.53313	0.00739595	0.00586883	0.074277	0.0690758
chr5	72219794	72219893	2639777	0	-	0.343434	(0.32,0.35]	chr5	250886	50	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	MRPS27	ENSG00000113048.18	ENST00000694990.1:ENST00000694989.1:ENST00000522042.2:ENST00000694988.1:ENST00000261413.10:ENST00000513900.6:ENST00000695403.1:ENST00000523654.6:ENST00000694998.1:ENST00000694997.1:ENST00000695298.1:ENST00000694996.1:ENST00000694995.1:ENST00000519143.6:ENST00000694994.1:ENST00000695297.1:ENST00000695296.1:ENST00000694993.1:ENST00000694992.1:ENST00000694991.1:ENST00000694999.1:ENST00000457646.9:ENST00000515226.5:ENST00000695404.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	27	395	2	2.18105	2.32802	2.47499	2.91478e-4	1.44903e-4	0.0152043	0.0110154
chr7	107196222	107196289	3378642	0	+	0.238806	[0,0.28]	chr7	316365	2	UTR3	UTR3:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HBP1	ENSG00000105856.14	ENST00000468410.5:ENST00000222574.9:ENST00000485846.5:ENST00000463202.5:ENST00000498408.1:ENST00000461963.1:ENST00000607681.1:ENST00000463790.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	152	2	1.8592	2.32799	2.79678	0.0250628	4.25186e-4	0.12011	0.018441
chr1	230121927	230122027	334626	0	+	0.36	(0.35,0.378]	chr1	38930	300	INTRON	INTRON	GALNT2	ENSG00000143641.10	ENST00000494106.1:ENST00000366672.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	60	2	1.4414	2.32798	3.21456	0.0629423	0.00420814	0.196658	0.0572185
chrX	136871105	136871200	7897584	0	-	0.452632	(0.44,0.476]	chrX	804143	3	INTRON	INTRON	RBMX	ENSG00000147274.14	ENST00000561733.5:ENST00000431446.7:ENST00000496459.2:ENST00000568578.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	13	167	2	2.18545	2.327975	2.4705	0.00161833	3.48349e-4	0.0369252	0.0174015
chr12	104309058	104309158	5210231	0	+	0.54	(0.515,0.57]	chr12	493210	176	INTRON	INTRON	TXNRD1	ENSG00000198431.17	ENST00000525566.6:ENST00000526266.5:ENST00000503506.6:ENST00000526691.5:ENST00000531691.5:ENST00000526390.5:ENST00000531689.5:ENST00000529546.5:ENST00000529751.1:ENST00000528079.6:ENST00000526580.5:ENST00000529784.5:ENST00000524698.5:ENST00000527688.5:ENST00000527335.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	55	2	2.27116	2.32796	2.38476	0.0110593	0.00601759	0.0873897	0.0700813
chrX	302179	302277	7605480	0	+	0.530612	(0.515,0.57]	chrX	779420	30	UTR3	UTR3:EXON_MRNA	PLCXD1	ENSG00000182378.15	ENST00000399012.6:ENST00000381657.8	protein_coding	protein_coding	protein_coding	protein_coding	7	72	2	1.49552	2.3279449999999997	3.16037	0.0385038	4.09074e-4	0.159277	0.0185763
chr1	206639939	206640038	301687	0	+	0.525253	(0.515,0.57]	chr1	34677	5	INTRON	INTRON	DYRK3	ENSG00000143479.18	ENST00000367109.8:ENST00000367108.7:ENST00000489878.1:ENST00000649163.1:ENST00000441486.5:ENST00000367106.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	66	2	2.20213	2.32794	2.45375	0.00853365	0.00273605	0.0780043	0.0483437
chr16	88717454	88717536	6539479	0	-	0.52439	(0.515,0.57]	chr16	633833	4	EXON_MRNA	EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PIEZO1	ENSG00000103335.22	ENST00000301015.14:ENST00000419505.5:ENST00000484567.6:ENST00000327397.8:ENST00000495568.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	57	2	1.3492	2.327925	3.30665	0.0480671	0.00213226	0.171405	0.041756
chr12	62469108	62469207	5151182	0	+	0.474747	(0.44,0.476]	chr12	487451	14	INTRON	INTRON	MON2	ENSG00000061987.16	ENST00000641654.1:ENST00000546600.5:ENST00000393630.8:ENST00000549378.5:ENST00000547095.5:ENST00000552738.5:ENST00000393629.6:ENST00000552115.5:ENST00000549286.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	67	2	1.49942	2.327905	3.15639	0.0792118	3.93757e-4	0.199574	0.0178567
chr18	46839789	46839888	6965943	0	-	0.50505	(0.476,0.515]	chr18	689474	29	INTRON	INTRON	PIAS2	ENSG00000078043.16	ENST00000585916.6:ENST00000398654.7:ENST00000324794.11:ENST00000545673.5:ENST00000592212.5:ENST00000590127.5:ENST00000592011.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	73	2	2.03337	2.327865	2.62236	0.00851546	0.00517	0.0833995	0.0631506
chr19	5113340	5113439	7004877	0	+	0.50505	(0.476,0.515]	chr19	694868	1	INTRON	INTRON	KDM4B	ENSG00000127663.15	ENST00000159111.9:ENST00000611640.4:ENST00000536461.5:ENST00000589104.5:ENST00000588361.1:ENST00000592159.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	73	2	1.99457	2.327845	2.66112	0.009924	0.0044598	0.0877296	0.0592169
chr7	102393184	102393284	3371372	0	+	0.55	(0.515,0.57]	chr7	315446	127	INTRON	INTRON	PRKRIP1	ENSG00000128563.13	ENST00000477886.5:ENST00000469763.5:ENST00000482549.5:ENST00000496391.5:ENST00000482465.5:ENST00000462601.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	55	2	2.11724	2.327845	2.53845	0.0110335	0.00632226	0.0927187	0.0687526
chr16	21468483	21468578	6461028	0	-	0.484211	(0.476,0.515]	chr16	623315	8	INTRON	INTRON	SMG1P3	ENSG00000180747.15	ENST00000522480.5:ENST00000522841.6	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	5	64	2	1.93059	2.32783	2.72507	0.023762	0.0029369	0.118822	0.0496505
chr6	7200212	7200312	2799294	0	+	0.31	(0.28,0.32]	chr6	263761	105	INTRON	INTRON	RREB1	ENSG00000124782.21	ENST00000379933.7:ENST00000471433.5:ENST00000379938.7:ENST00000349384.10:ENST00000334984.10:ENST00000475946.5:ENST00000483150.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	51	2	1.91611	2.32778	2.73945	0.0539102	0.017681	0.164153	0.11319
chr17	2406444	2406542	6705149	0	-	0.438776	(0.408,0.44]	chr17	656522	10	EXON_LNCRNA	EXON_LNCRNA	METTL16	ENSG00000127804.13	ENST00000571332.5	protein_coding	processed_transcript	protein_coding	processed_transcript	4	50	2	1.83501	2.327715	2.82042	0.0323448	0.0120121	0.133003	0.0962115
chr1	160996693	160996792	573129	0	-	0.454545	(0.44,0.476]	chr1	69461	16	UTR3	UTR3:EXON_MRNA	F11R	ENSG00000158769.18	ENST00000621309.4:ENST00000368026.11	protein_coding	protein_coding	protein_coding	protein_coding	8	102	2	2.29258	2.3276000000000003	2.36262	0.00279559	0.00255041	0.0488779	0.0449067
chr1	226063902	226063976	327779	0	+	0.486486	(0.476,0.515]	chr1	37743	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	H3-3A	ENSG00000163041.13	ENST00000366816.5:ENST00000366814.3:ENST00000366815.10:ENST00000653960.1:ENST00000655399.1:ENST00000667897.1:ENST00000656829.1:ENST00000666609.1:ENST00000661429.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	10	102	2	1.62493	2.3276	3.03027	0.0118751	9.53446e-4	0.0962115	0.0282335
chr17	46131732	46131832	6784253	0	-	0.45	(0.44,0.476]	chr17	669216	105	INTRON	INTRON	KANSL1	ENSG00000120071.15	ENST00000574590.6:ENST00000572904.6:ENST00000432791.7:ENST00000575318.6:ENST00000638275.1:ENST00000262419.10:ENST00000648792.1:ENST00000639531.1:ENST00000639150.1:ENST00000639853.1:ENST00000571698.2:ENST00000639375.1:ENST00000638269.1:ENST00000576248.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	82	2	1.56617	2.32747	3.08877	0.0338203	5.52878e-4	0.134476	0.021371
chr2	241334031	241334130	1053800	0	+	0.464646	(0.44,0.476]	chr2	112223	76	INTRON	INTRON	SEPTIN2	ENSG00000168385.18	ENST00000391973.6:ENST00000428282.5:ENST00000492978.5:ENST00000360051.7:ENST00000407017.5:ENST00000445030.5:ENST00000428524.5:ENST00000469434.5:ENST00000616972.4:ENST00000495463.5:ENST00000482304.5:ENST00000475474.5:ENST00000401990.5:ENST00000469175.5:ENST00000407971.5:ENST00000457335.5:ENST00000436795.5:ENST00000494824.5:ENST00000411484.5:ENST00000462147.5:ENST00000434955.5:ENST00000466211.5:ENST00000391971.7:ENST00000402092.6:ENST00000484740.1:ENST00000473479.5:ENST00000464128.5:ENST00000441533.5:ENST00000467971.5:ENST00000425899.5:ENST00000443492.5:ENST00000437066.5:ENST00000420786.5:ENST00000475823.5:ENST00000449239.5:ENST00000366210.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	66	2	2.08277	2.327385	2.572	0.0309998	0.00173736	0.13151	0.03851
chr17	50732960	50733060	6627102	0	+	0.38	(0.378,0.408]	chr17	647183	86	INTRON	INTRON	LUC7L3	ENSG00000108848.16	ENST00000625349.2:ENST00000508045.5:ENST00000508218.5:ENST00000509335.5:ENST00000506686.5:ENST00000393227.6:ENST00000504563.6:ENST00000505658.6:ENST00000240304.5:ENST00000508482.5:ENST00000505619.5:ENST00000510984.5:ENST00000507200.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	131	2	2.14429	2.3273599999999997	2.51043	0.00304007	0.00100501	0.0493883	0.0292285
chr4	2911612	2911711	1915725	0	+	0.50505	(0.476,0.515]	chr4	192335	18	INTRON	INTRON	ADD1	ENSG00000087274.19	ENST00000683351.1:ENST00000398125.5:ENST00000264758.11:ENST00000513328.6:ENST00000503455.6:ENST00000355842.7:ENST00000651918.1:ENST00000398129.5:ENST00000398123.6:ENST00000514940.5:ENST00000541051.5:ENST00000513762.2:ENST00000536424.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	112	2	2.21639	2.3273	2.43821	0.00224357	0.00177508	0.0435144	0.0378678
chr5	40774328	40774427	2610925	0	-	0.272727	[0,0.28]	chr5	248251	21	INTRON	INTRON	PRKAA1	ENSG00000132356.12	ENST00000397128.7:ENST00000354209.7:ENST00000506652.5:ENST00000509874.5:ENST00000296800.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	79	2	1.60593	2.3273	3.04867	0.0433625	0.0104221	0.162255	0.085482
chr12	68830030	68830130	5163210	0	+	0.24	[0,0.28]	chr12	488944	7	INTRON	INTRON	MDM2	ENSG00000135679.27	ENST00000258149.11:ENST00000393412.7:ENST00000311420.13:ENST00000393417.8:ENST00000258148.11:ENST00000539479.6:ENST00000523991.5:ENST00000543323.5:ENST00000393415.7:ENST00000393416.7:ENST00000481186.6:ENST00000545204.2:ENST00000544561.6:ENST00000665020.1:ENST00000666617.1:ENST00000671567.1:ENST00000393410.5:ENST00000496959.5:ENST00000299252.8:ENST00000360430.6:ENST00000517852.5:ENST00000546048.5:ENST00000540352.5:ENST00000542502.5:ENST00000537182.5:ENST00000536089.5:ENST00000393413.7:ENST00000350057.9:ENST00000348801.7:ENST00000478070.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	88	2	1.50357	2.327295	3.15102	0.0436989	0.00767596	0.162255	0.0753665
chr5	136178074	136178173	2493296	0	+	0.232323	[0,0.28]	chr5	238185	7	UTR3	UTR3:EXON_MRNA:INTRON	SMAD5	ENSG00000113658.18	ENST00000545279.6:ENST00000545620.5:ENST00000513418.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	88	2	1.50357	2.327295	3.15102	0.0436989	0.00767596	0.162255	0.0753665
chr3	5131978	5132078	1353672	0	+	0.47	(0.44,0.476]	chr3	142361	30	INTRON	INTRON	ARL8B	ENSG00000134108.14	ENST00000429403.5:ENST00000256496.8:ENST00000455168.5:ENST00000444332.1:ENST00000419534.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	57	2	2.04674	2.3272399999999998	2.60774	0.0255874	0.00803423	0.120269	0.0803474
chr8	123357061	123357161	4042230	0	-	0.34	(0.32,0.35]	chr8	368728	1	SS5_PROX	SS5_PROX:INTRON	ATAD2	ENSG00000156802.13	ENST00000287394.10:ENST00000517666.5:ENST00000521903.5:ENST00000519124.5:ENST00000521496.5:ENST00000550993.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	104	2	1.89094	2.3271699999999997	2.7634	0.0185636	8.19858e-4	0.108861	0.026165
chr8	67145501	67145601	3777473	0	+	0.43	(0.408,0.44]	chr8	350387	63	INTRON	INTRON	CSPP1	ENSG00000104218.16	ENST00000676113.1:ENST00000675306.2:ENST00000678156.1:ENST00000262210.11:ENST00000678017.1:ENST00000675869.1:ENST00000678542.1:ENST00000677619.1:ENST00000676605.1:ENST00000676471.1:ENST00000677256.1:ENST00000676847.1:ENST00000677009.1:ENST00000676317.1:ENST00000677592.1:ENST00000676573.1:ENST00000678318.1:ENST00000677473.1:ENST00000674993.1:ENST00000679226.1:ENST00000676882.1:ENST00000675955.1:ENST00000677430.1:ENST00000677455.1:ENST00000678616.1:ENST00000678362.1:ENST00000679112.1:ENST00000678645.1:ENST00000676567.1:ENST00000677845.1:ENST00000519163.6:ENST00000676858.1:ENST00000678747.1:ENST00000519668.1:ENST00000676697.1:ENST00000677855.1:ENST00000676695.1:ENST00000676534.1:ENST00000678138.1:ENST00000678807.1:ENST00000677052.1:ENST00000679274.1:ENST00000679042.1:ENST00000678635.1:ENST00000676804.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	56	2	1.44993	2.32715	3.20437	0.0638951	0.00306596	0.177824	0.0509893
chr1	42956642	42956741	433126	0	-	0.464646	(0.44,0.476]	chr1	52506	19	INTRON	INTRON	SLC2A1	ENSG00000117394.24	ENST00000426263.10:ENST00000630287.2:ENST00000675112.1:ENST00000674765.1:ENST00000625233.2:ENST00000372500.4:ENST00000415851.6:ENST00000630821.1:ENST00000460369.3:ENST00000676097.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	61	2	1.62674	2.327125	3.02751	0.0253995	0.00715968	0.133676	0.0723634
chr10	124768398	124768497	4712310	0	-	0.474747	(0.44,0.476]	chr10	434810	24	INTRON	INTRON	EEF1AKMT2	ENSG00000203791.15	ENST00000652548.1:ENST00000466270.5:ENST00000368836.7:ENST00000464099.5:ENST00000498770.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	61	2	1.62674	2.327125	3.02751	0.0253995	0.00715968	0.133676	0.0723634
chr16	67784863	67784963	6505466	0	-	0.51	(0.476,0.515]	chr16	629654	124	INTRON	INTRON	RANBP10	ENSG00000141084.12	ENST00000317506.8:ENST00000448631.6:ENST00000602506.5:ENST00000602677.5:ENST00000602525.5:ENST00000602638.5:ENST00000602815.5:ENST00000602887.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	64	2	1.97402	2.327125	2.68023	0.0206778	0.00353671	0.110999	0.0546236
chr16	18160759	18160859	6454242	0	-	0.45	(0.44,0.476]	chr16	621964	93	INTRON	INTRON	ENSG00000260242	ENSG00000260242.1	ENST00000563866.1	lncRNA	lncRNA	lncRNA	lncRNA	3	40	2	1.85146	2.327105	2.80275	0.0545846	0.0146513	0.182529	0.0982604
chr17	21008887	21008985	6742813	0	-	0.44898	(0.44,0.476]	chr17	662022	5	INTRON	INTRON	USP22	ENSG00000124422.12	ENST00000261497.9:ENST00000537526.6:ENST00000455117.6:ENST00000579645.5:ENST00000478443.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	40	2	1.85146	2.327105	2.80275	0.0545846	0.0146513	0.182529	0.0982604
chr21	46204936	46205036	7470624	0	-	0.35	(0.32,0.35]	chr21	761464	83	INTRON	INTRON	LSS	ENSG00000160285.15	ENST00000356396.8:ENST00000397728.8:ENST00000457828.6:ENST00000522411.5	protein_coding	protein_coding	protein_coding	protein_coding	15	214	2	2.30778	2.327105	2.34643	0.00165847	3.01041e-4	0.0369207	0.0155054
chr9	135934015	135934112	4372282	0	-	0.463918	(0.44,0.476]	chr9	402502	1	INTRON	INTRON	UBAC1	ENSG00000130560.9	ENST00000371756.4:ENST00000489050.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	40	2	1.85146	2.327105	2.80275	0.0545846	0.0146513	0.182529	0.0982604
chr2	188264631	188264731	1295167	0	-	0.36	(0.35,0.378]	chr2	135671	357	INTRON	INTRON	LINC01090	ENSG00000231689.3	ENST00000434418.2:ENST00000632331.1:ENST00000415357.1	lncRNA	lncRNA	lncRNA	lncRNA	7	90	2	2.09348	2.327095	2.56071	0.00725312	0.00418185	0.072984	0.0591344
chr3	15840889	15840989	1624256	0	-	0.5	(0.476,0.515]	chr3	168034	262	INTRON	INTRON	ANKRD28	ENSG00000206560.12	ENST00000399451.6:ENST00000412318.5:ENST00000439830.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	100	2	2.21025	2.32709	2.44393	0.00913757	7.12759e-4	0.0812335	0.0243332
chr11	8686202	8686301	4729022	0	+	0.494949	(0.476,0.515]	chr11	437780	5	UTR3	UTR3:EXON_MRNA	RPL27A	ENSG00000166441.13	ENST00000314138.11	protein_coding	protein_coding	protein_coding	protein_coding	24	285	2	2.1373	2.3270600000000004	2.51682	9.59562e-4	2.40571e-4	0.0284801	0.0142561
chr10	96558458	96558558	4674142	0	-	0.49	(0.476,0.515]	chr10	430703	50	INTRON	INTRON	TM9SF3	ENSG00000077147.16	ENST00000371142.9:ENST00000649367.1:ENST00000443638.1:ENST00000464654.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	54	2	2.19809	2.327035	2.45598	0.020317	0.00945755	0.121522	0.0817766
chr20	53578033	53578133	7358324	0	-	0.51	(0.476,0.515]	chr20	750296	3	SS5_PROX	SS5_PROX:INTRON	ZNF217	ENSG00000171940.14	ENST00000371471.7:ENST00000302342.3	protein_coding	protein_coding	protein_coding	protein_coding	4	54	2	2.19809	2.327035	2.45598	0.020317	0.00945755	0.121522	0.0817766
chr2	127804256	127804356	1225816	0	-	0.4	(0.378,0.408]	chr2	130519	329	INTRON	INTRON	WDR33	ENSG00000136709.12	ENST00000322313.9:ENST00000436787.5:ENST00000393006.5:ENST00000409658.7:ENST00000408998.1	protein_coding	protein_coding	protein_coding	protein_coding	4	57	2	2.17608	2.3268	2.47752	0.0218783	0.0092831	0.123836	0.0817766
chr3	43700820	43700918	1410277	0	+	0.438776	(0.408,0.44]	chr3	147925	9	INTRON	INTRON	ABHD5	ENSG00000011198.10	ENST00000643520.1:ENST00000456453.5:ENST00000458276.7:ENST00000649763.1:ENST00000643140.1:ENST00000643500.1:ENST00000644371.2:ENST00000013894.3:ENST00000646378.1:ENST00000643477.1:ENST00000646799.1:ENST00000454293.2:ENST00000642351.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	110	2	2.3232	2.3267949999999997	2.33039	0.00598147	7.89066e-4	0.0674604	0.0258324
chr16	84734691	84734790	6410258	0	+	0.30303	(0.28,0.32]	chr16	615290	8	INTRON	INTRON	USP10	ENSG00000103194.16	ENST00000562743.5:ENST00000540269.6:ENST00000563892.5:ENST00000562092.1:ENST00000219473.12:ENST00000570191.5:ENST00000563048.5:ENST00000562283.5:ENST00000563386.5:ENST00000569038.5:ENST00000570053.1:ENST00000566512.1:ENST00000563023.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	50	2	2.08149	2.32672	2.57195	0.0331711	0.031124	0.143644	0.133994
chr4	39738409	39738508	1953395	0	+	0.292929	(0.28,0.32]	chr4	195636	5	INTRON	INTRON	UBE2K	ENSG00000078140.14	ENST00000510934.5:ENST00000261427.10:ENST00000438068.6:ENST00000513231.5:ENST00000503368.5:ENST00000445950.2:ENST00000510719.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	50	2	2.08149	2.32672	2.57195	0.0331711	0.031124	0.143644	0.133994
chr10	73096365	73096465	4647842	0	-	0.53	(0.515,0.57]	chr10	427558	2	SS5_PROX	SS5_PROX:INTRON	P4HA1	ENSG00000122884.13	ENST00000394890.7:ENST00000307116.6:ENST00000373008.6:ENST00000440381.5:ENST00000263556.3	protein_coding	protein_coding	protein_coding	protein_coding	19	199	2	2.05743	2.326675	2.59592	0.00124693	2.30058e-5	0.0323336	0.00374205
chr7	102850195	102850294	3590120	0	-	0.353535	(0.35,0.378]	chr7	335153	169	INTRON	INTRON	FBXL13	ENSG00000161040.18	ENST00000694871.1:ENST00000694870.1:ENST00000448002.6:ENST00000379305.7:ENST00000440067.3:ENST00000456695.6:ENST00000313221.8:ENST00000436908.5:ENST00000455112.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	85	2	2.29482	2.3266	2.35838	0.00743782	0.00468156	0.0746192	0.0631419
chr10	73019692	73019792	4647063	0	-	0.37	(0.35,0.378]	chr10	427494	24	INTRON	INTRON	P4HA1	ENSG00000122884.13	ENST00000394890.7:ENST00000307116.6:ENST00000373008.6:ENST00000440381.5:ENST00000263556.3	protein_coding	protein_coding	protein_coding	protein_coding	8	110	2	1.50939	2.326595	3.1438	0.0423993	9.93672e-5	0.148082	0.00838841
chr16	68114989	68115089	6370520	0	+	0.31	(0.28,0.32]	chr16	612188	254	INTRON	INTRON	ENSG00000261864:NFATC3	ENSG00000261864.1:ENSG00000072736.19	ENST00000548144.1:ENST00000563319.5:ENST00000569766.5:ENST00000553077.5:ENST00000566301.5:ENST00000549350.5:ENST00000566893.5:ENST00000575270.5:ENST00000561714.5:ENST00000346183.8:ENST00000568466.6:ENST00000539828.6:ENST00000562171.1:ENST00000349223.9:ENST00000329524.8:ENST00000379165.8:ENST00000562926.5:ENST00000570212.5:ENST00000563796.5:ENST00000567152.5:ENST00000563288.5:ENST00000535127.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA:processed_transcript	4	68	2	2.09794	2.326575	2.55521	0.0340483	0.0067419	0.134863	0.0739405
chr22	16785906	16786006	7546258	0	-	0.29	(0.28,0.32]	chr22	771315	11	INTRON	INTRON	XKR3	ENSG00000172967.8	ENST00000331428.5:ENST00000684488.1	protein_coding	protein_coding	protein_coding	protein_coding	4	68	2	2.09794	2.326575	2.55521	0.0340483	0.0067419	0.134863	0.0739405
chr1	93088496	93088596	162631	0	+	0.23	[0,0.28]	chr1	17567	71	INTRON	INTRON	MTF2	ENSG00000143033.18	ENST00000540243.5:ENST00000545708.5:ENST00000474314.6:ENST00000370298.9:ENST00000473430.5:ENST00000494963.5:ENST00000471953.5:ENST00000370303.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	57	2	2.10688	2.3265599999999997	2.54624	0.0388449	0.0307985	0.143385	0.143072
chr16	89647678	89647778	6543679	0	-	0.74	(0.57,1]	chr16	634307	1	CDS	CDS:UTR3:EXON_MRNA:SS3_PROX:INTRON	CHMP1A	ENSG00000131165.16	ENST00000675909.1:ENST00000397901.8:ENST00000676355.1:ENST00000675161.1:ENST00000676402.1:ENST00000675016.1:ENST00000551981.6:ENST00000675309.1:ENST00000547687.2:ENST00000675952.1:ENST00000676342.1:ENST00000535997.7:ENST00000674799.1:ENST00000675536.1:ENST00000549328.2:ENST00000675778.1:ENST00000676118.1:ENST00000675076.1:ENST00000549139.5:ENST00000550102.5:ENST00000548650.1:ENST00000547614.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	34	2	2.32017	2.3265599999999997	2.33295	0.0122896	0.00488159	0.091087	0.0640618
chr2	177260906	177261006	1275809	0	-	0.58	(0.57,1]	chr2	134708	263	INTRON	INTRON	NFE2L2	ENSG00000116044.16	ENST00000397063.8:ENST00000464747.5:ENST00000397062.8:ENST00000446151.6:ENST00000449627.1:ENST00000448782.5:ENST00000430047.1:ENST00000586532.5:ENST00000421929.5:ENST00000423513.5:ENST00000588123.1:ENST00000477534.1:ENST00000462023.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	34	2	2.32017	2.3265599999999997	2.33295	0.0122896	0.00488159	0.091087	0.0640618
chr7	65879058	65879158	3322935	0	+	0.4	(0.378,0.408]	chr7	309012	51	INTRON	INTRON	VKORC1L1	ENSG00000196715.7	ENST00000360768.5:ENST00000648187.1:ENST00000648179.1:ENST00000434382.2	protein_coding	protein_coding	protein_coding	protein_coding	6	63	2	1.50417	2.326545	3.14892	0.0384675	0.00499984	0.159169	0.0617433
chr1	77720097	77720192	493733	0	-	0.305263	(0.28,0.32]	chr1	58381	11	INTRON	INTRON	USP33	ENSG00000077254.14	ENST00000370794.7:ENST00000370793.5:ENST00000357428.5:ENST00000481579.5:ENST00000370792.7:ENST00000527390.1:ENST00000461986.5:ENST00000531637.5:ENST00000462192.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	103	2	1.72279	2.326525	2.93026	0.0496859	4.1414e-4	0.156383	0.0181789
chr5	131742472	131742571	2720198	0	-	0.272727	[0,0.28]	chr5	255724	111	INTRON	INTRON	FNIP1	ENSG00000217128.13	ENST00000510461.6:ENST00000307954.12:ENST00000307968.11:ENST00000511848.1	protein_coding	protein_coding	protein_coding	protein_coding	3	57	2	2.05756	2.32652	2.59548	0.0352544	0.0346067	0.150301	0.136649
chr11	5424955	5425055	4897469	0	-	0.4	(0.378,0.408]	chr11	459187	777	INTRON	INTRON	HBG2:ENSG00000239920:HBE1:OR51B5	ENSG00000196565.15:ENSG00000239920.2:ENSG00000213931.7:ENSG00000167355.8	ENST00000380252.6:ENST00000380259.7:ENST00000292896.3:ENST00000380237.5:ENST00000420726.6:ENST00000420465.6:ENST00000415970.6:ENST00000418729.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:nonsense_mediated_decay:processed_transcript	11	146	2	2.04984	2.326505	2.60317	0.00321033	4.9423e-4	0.0522684	0.0206664
chr11	31475836	31475933	4938900	0	-	0.340206	(0.32,0.35]	chr11	462591	17	INTRON	INTRON	IMMP1L	ENSG00000148950.11	ENST00000532287.6:ENST00000534812.5:ENST00000526776.5:ENST00000278200.5:ENST00000648582.1:ENST00000533642.1:ENST00000527184.5:ENST00000528161.5:ENST00000532624.5:ENST00000529749.5:ENST00000530023.5:ENST00000531693.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	64	2	1.80487	2.326495	2.84812	0.0210603	0.0147575	0.122559	0.0983813
chr16	89810014	89810110	6544756	0	-	0.5	(0.476,0.515]	chr16	634602	12	INTRON	INTRON	FANCA	ENSG00000187741.16	ENST00000561667.2:ENST00000389301.8:ENST00000568369.6:ENST00000564475.6:ENST00000696275.1:ENST00000696287.1:ENST00000696286.1:ENST00000696291.1:ENST00000696276.1:ENST00000567205.2:ENST00000567284.7:ENST00000696277.1:ENST00000696292.1:ENST00000563767.2:ENST00000567621.6:ENST00000696288.1:ENST00000696293.1:ENST00000566889.5:ENST00000389302.7:ENST00000696294.1:ENST00000696295.1:ENST00000563673.5:ENST00000543736.5:ENST00000534992.5:ENST00000565582.5:ENST00000696296.1:ENST00000563513.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	12	148	2	2.12484	2.3264899999999997	2.52814	0.00276065	2.55095e-4	0.0469265	0.0142249
chr9	37238405	37238505	4118841	0	+	0.27	[0,0.28]	chr9	375389	515	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000461038.5:ENST00000488607.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	79	2	1.67675	2.326455	2.97616	0.0352695	0.0128425	0.150332	0.0926667
chr13	106558931	106559031	5648839	0	-	0.39	(0.378,0.408]	chr13	538150	19	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	ARGLU1	ENSG00000134884.15	ENST00000400198.8:ENST00000472226.2:ENST00000375926.5:ENST00000360629.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	9	117	2	2.3043	2.326425	2.34855	0.0035117	0.00119031	0.0525467	0.0316639
chr1	65268924	65269024	135682	0	+	0.25	[0,0.28]	chr1	15346	36	INTRON	INTRON	DNAJC6	ENSG00000116675.16	ENST00000463018.5:ENST00000494710.6:ENST00000263441.11:ENST00000395325.7:ENST00000483402.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	69	2	1.91898	2.32641	2.73384	0.0266433	0.0246308	0.134413	0.12011
chr1	160336099	160336192	572248	0	-	0.548387	(0.515,0.57]	chr1	69366	4	INTRON	INTRON	COPA	ENSG00000122218.17	ENST00000241704.8:ENST00000696204.1:ENST00000696203.1:ENST00000649963.1:ENST00000696208.1:ENST00000696207.1:ENST00000368069.7:ENST00000647693.1:ENST00000649787.1:ENST00000650154.1:ENST00000647799.1:ENST00000648805.1:ENST00000647683.1:ENST00000649231.1:ENST00000696209.1:ENST00000696210.1:ENST00000696211.1:ENST00000696212.1:ENST00000696214.1:ENST00000696213.1:ENST00000696215.1:ENST00000541366.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	121	2	1.54685	2.32639	3.10593	0.0166379	2.50623e-5	0.102621	0.00392664
chr1	108958848	108958948	519132	0	-	0.55	(0.515,0.57]	chr1	60929	4	SS5_PROX	SS5_PROX:INTRON	CLCC1	ENSG00000121940.17	ENST00000690509.1:ENST00000687328.1:ENST00000685014.1:ENST00000685540.1:ENST00000686576.1:ENST00000688070.1:ENST00000691513.1:ENST00000686821.1:ENST00000692511.1:ENST00000689479.1:ENST00000687646.1:ENST00000687998.1:ENST00000687226.1:ENST00000693336.1:ENST00000689991.1:ENST00000687591.1:ENST00000691777.1:ENST00000690756.1:ENST00000688778.1:ENST00000685104.1:ENST00000689103.1:ENST00000687734.1:ENST00000686434.1:ENST00000685497.1:ENST00000691342.1:ENST00000686776.1:ENST00000692342.1:ENST00000689351.1:ENST00000692584.1:ENST00000692775.1:ENST00000687134.1:ENST00000675018.1:ENST00000690781.1:ENST00000691556.1:ENST00000689189.1:ENST00000687099.1:ENST00000685791.1:ENST00000687865.1:ENST00000687449.1:ENST00000688285.1:ENST00000369968.7:ENST00000674992.1:ENST00000675001.1:ENST00000369969.7:ENST00000356970.6:ENST00000688610.1:ENST00000675128.1:ENST00000693089.1:ENST00000675571.1:ENST00000675650.1:ENST00000369970.8:ENST00000674561.2:ENST00000675654.1:ENST00000675790.1:ENST00000675584.1:ENST00000692795.1:ENST00000691731.1:ENST00000689359.1:ENST00000676392.2:ENST00000676391.2:ENST00000676454.1:ENST00000674849.1:ENST00000675956.1:ENST00000302500.5:ENST00000675508.1:ENST00000688168.1:ENST00000693673.1:ENST00000692404.1:ENST00000686078.1:ENST00000690874.1:ENST00000692732.1:ENST00000685628.1:ENST00000676306.1:ENST00000676059.2:ENST00000674527.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	12	125	2	2.30697	2.32633	2.34569	0.0012338	4.71195e-4	0.0322271	0.0196294
chr18	9915165	9915265	6873351	0	+	0.45	(0.44,0.476]	chr18	680861	1	SS5_PROX	SS5_PROX:INTRON	VAPA	ENSG00000101558.14	ENST00000400000.7:ENST00000577901.5:ENST00000340541.4:ENST00000585042.5:ENST00000578314.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	22	258	2	2.05609	2.3263100000000003	2.59653	4.45215e-4	1.19927e-4	0.0191108	0.0099201
chr17	35833315	35833413	6601335	0	+	0.255102	[0,0.28]	chr17	642440	20	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	TAF15	ENSG00000270647.7	ENST00000605844.6:ENST00000603777.6:ENST00000604694.2:ENST00000689923.1:ENST00000603393.6:ENST00000685897.1:ENST00000603427.6:ENST00000604879.6:ENST00000604841.5:ENST00000603067.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	16	287	2	2.2405	2.326285	2.41207	0.00351302	2.93153e-4	0.0525641	0.0152868
chr11	130306481	130306581	5053782	0	-	0.35	(0.32,0.35]	chr11	476969	442	INTRON	INTRON	ZBTB44	ENSG00000196323.14	ENST00000357899.9:ENST00000527478.6:ENST00000445008.6:ENST00000525842.5:ENST00000397753.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	46	2	2.07985	2.3262400000000003	2.57263	0.0312297	0.0303092	0.143025	0.13151
chr22	47873959	47874059	7541808	0	+	0.33	(0.32,0.35]	chr22	770801	94	INTRON	INTRON	ENSG00000224271	ENSG00000224271.7	ENST00000664761.1:ENST00000650683.1:ENST00000651536.1:ENST00000651445.1:ENST00000650660.1:ENST00000651403.1:ENST00000652228.1:ENST00000651124.1:ENST00000651003.1:ENST00000651939.1:ENST00000652080.1:ENST00000651033.1:ENST00000651584.1	lncRNA	lncRNA	lncRNA	lncRNA	3	46	2	2.07985	2.3262400000000003	2.57263	0.0312297	0.0303092	0.143025	0.13151
chr1	28919470	28919570	59005	0	+	0.52	(0.515,0.57]	chr1	7621	43	INTRON	INTRON	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000647918.1:ENST00000646800.1:ENST00000644342.1:ENST00000646189.1:ENST00000482464.6:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000646260.1:ENST00000373798.5:ENST00000644600.1:ENST00000649674.1:ENST00000643173.1:ENST00000343067.9:ENST00000644780.1:ENST00000650265.1:ENST00000648181.1:ENST00000643604.1:ENST00000648891.1:ENST00000373797.2:ENST00000349460.9:ENST00000645184.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	116	2	2.09682	2.326235	2.55565	0.0026155	3.23259e-4	0.0455413	0.0159645
chr11	13703259	13703357	4742656	0	+	0.520408	(0.515,0.57]	chr11	439171	24	INTRON	INTRON	FAR1	ENSG00000197601.13	ENST00000354817.8:ENST00000532701.1:ENST00000524933.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	41	2	1.81744	2.326225	2.83501	0.031028	0.0117686	0.143457	0.0894475
chr8	22251713	22251812	3712597	0	+	0.525253	(0.515,0.57]	chr8	344788	13	UTR3	UTR3:EXON_MRNA	POLR3D	ENSG00000168495.13	ENST00000306433.9:ENST00000397802.8	protein_coding	protein_coding	protein_coding	protein_coding	4	41	2	1.81744	2.326225	2.83501	0.031028	0.0117686	0.143457	0.0894475
chr3	177144220	177144319	1871913	0	-	0.373737	(0.35,0.378]	chr3	187422	81	INTRON	INTRON	TBL1XR1	ENSG00000177565.18	ENST00000457928.7:ENST00000430069.5:ENST00000673974.1:ENST00000352800.10:ENST00000422442.6:ENST00000428970.5:ENST00000424913.5:ENST00000437738.5:ENST00000431421.5:ENST00000635794.1:ENST00000630796.2:ENST00000450267.5:ENST00000630833.2:ENST00000431674.5:ENST00000422066.5:ENST00000443315.5:ENST00000627825.2:ENST00000427349.5:ENST00000413084.5:ENST00000637137.1:ENST00000491623.2:ENST00000637544.1:ENST00000636187.1:ENST00000636912.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	9	124	2	1.82648	2.326175	2.82587	0.0150408	2.03484e-4	0.0994339	0.0124395
chr2	111471215	111471306	1211567	0	-	0.296703	(0.28,0.32]	chr2	128918	9	INTRON	INTRON	MIR4435-2HG	ENSG00000172965.17	ENST00000645030.2:ENST00000642191.1:ENST00000673798.1:ENST00000645051.2:ENST00000673649.1:ENST00000669658.1:ENST00000669917.1:ENST00000661559.1:ENST00000653687.1:ENST00000667670.1:ENST00000609220.2:ENST00000656760.1:ENST00000609902.6:ENST00000666683.1:ENST00000674070.1:ENST00000662335.1:ENST00000664422.1:ENST00000673775.1:ENST00000674092.1:ENST00000673958.1:ENST00000658936.1:ENST00000662635.1:ENST00000666204.1:ENST00000659458.1:ENST00000664443.1:ENST00000670295.1:ENST00000661655.1:ENST00000666390.1:ENST00000659079.1:ENST00000660442.1:ENST00000664009.1:ENST00000439362.6:ENST00000654473.1:ENST00000664999.1:ENST00000673728.1:ENST00000659791.1:ENST00000666144.1:ENST00000659933.1:ENST00000670715.1:ENST00000653568.1:ENST00000643013.1:ENST00000673866.1:ENST00000443467.6:ENST00000669875.1:ENST00000673653.1:ENST00000673988.1:ENST00000661945.1:ENST00000669515.1:ENST00000431385.6:ENST00000656416.1:ENST00000674037.1:ENST00000432818.5:ENST00000674013.1:ENST00000444301.5:ENST00000673964.1:ENST00000673845.1:ENST00000673756.1:ENST00000673960.1:ENST00000673804.1:ENST00000673632.1:ENST00000453478.2:ENST00000673937.1:ENST00000673654.1:ENST00000409569.2:ENST00000674087.1:ENST00000419736.5:ENST00000673840.1:ENST00000674045.1:ENST00000673821.1:ENST00000643766.1:ENST00000308604.5:ENST00000604981.5:ENST00000673894.1:ENST00000442293.5:ENST00000441075.1:ENST00000673878.1:ENST00000439494.1	lncRNA	lncRNA	lncRNA	lncRNA	5	71	2	1.47775	2.3261399999999997	3.17453	0.0653002	0.00429297	0.180158	0.0599065
chr1	28993642	28993742	59751	0	+	0.41	(0.408,0.44]	chr1	7642	1	SS5_PROX	SS5_PROX:INTRON	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000647918.1:ENST00000646800.1:ENST00000644342.1:ENST00000646189.1:ENST00000482464.6:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000646260.1:ENST00000373798.5:ENST00000644600.1:ENST00000649674.1:ENST00000643173.1:ENST00000343067.9:ENST00000644780.1:ENST00000650265.1:ENST00000648181.1:ENST00000643604.1:ENST00000648891.1:ENST00000373797.2:ENST00000349460.9:ENST00000645184.1:ENST00000645111.1:ENST00000643302.1:ENST00000645999.1:ENST00000642643.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	40	2	2.21238	2.32613	2.43988	0.0398236	0.0193525	0.143072	0.119831
chr20	41095149	41095248	7274180	0	+	0.434343	(0.408,0.44]	chr20	739260	27	EXON_MRNA	EXON_MRNA:INTRON	TOP1	ENSG00000198900.7	ENST00000361337.3:ENST00000681113.1:ENST00000681058.1:ENST00000681392.1:ENST00000681884.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	40	2	2.21238	2.32613	2.43988	0.0398236	0.0193525	0.143072	0.119831
chr3	128483176	128483267	1813573	0	-	0.43956	(0.408,0.44]	chr3	182217	9	INTRON	INTRON	GATA2	ENSG00000179348.13	ENST00000341105.7:ENST00000696466.1:ENST00000430265.6:ENST00000487848.5	protein_coding	protein_coding	protein_coding	protein_coding	3	40	2	2.21238	2.32613	2.43988	0.0398236	0.0193525	0.143072	0.119831
chr8	9781755	9781853	3701803	0	+	0.438776	(0.408,0.44]	chr8	343368	52	UTR3	UTR3:EXON_MRNA	TNKS	ENSG00000173273.16	ENST00000310430.11	protein_coding	protein_coding	protein_coding	protein_coding	3	40	2	2.21238	2.32613	2.43988	0.0398236	0.0193525	0.143072	0.119831
chr8	47899425	47899515	3945123	0	-	0.444444	(0.44,0.476]	chr8	361835	5	INTRON	INTRON	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7	protein_coding	protein_coding	protein_coding	protein_coding	17	204	2	2.03798	2.3261000000000003	2.61422	0.00124444	1.50864e-4	0.0322969	0.0106137
chr17	39349532	39349632	6766131	0	-	0.42	(0.408,0.44]	chr17	665497	59	INTRON	INTRON	FBXL20	ENSG00000108306.13	ENST00000264658.11:ENST00000583610.5:ENST00000394294.7:ENST00000577399.5:ENST00000647139.1	protein_coding	protein_coding	protein_coding	protein_coding	6	61	2	1.49789	2.326015	3.15414	0.0390091	0.00469847	0.161009	0.0600108
chr11	120468395	120468493	4877558	0	+	0.377551	(0.35,0.378]	chr11	455941	7	INTRON	INTRON	ARHGEF12	ENSG00000196914.9	ENST00000397843.7:ENST00000356641.7:ENST00000532993.5:ENST00000529970.5:ENST00000531616.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	52	2	1.92704	2.326005	2.72497	0.0228255	0.0198266	0.125469	0.109608
chr9	125313606	125313705	4198784	0	+	0.484848	(0.476,0.515]	chr9	383202	6	INTRON	INTRON	GAPVD1	ENSG00000165219.23	ENST00000497580.5:ENST00000297933.11:ENST00000470056.5:ENST00000394105.6:ENST00000394083.6:ENST00000495955.5:ENST00000467750.5:ENST00000394104.6:ENST00000312123.13:ENST00000431329.5:ENST00000436712.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	72	2	1.45223	2.32599	3.19975	0.0284116	0.00383299	0.138377	0.0542786
chr7	75451814	75451914	3558585	0	-	0.43	(0.408,0.44]	chr7	331545	92	INTRON	INTRON	POM121C	ENSG00000272391.6	ENST00000615331.5:ENST00000398379.2	protein_coding	protein_coding	protein_coding	protein_coding	6	61	2	1.45162	2.32598	3.20034	0.0451203	0.00398025	0.163518	0.0549214
chr15	76226486	76226579	6227473	0	-	0.548387	(0.515,0.57]	chr15	594880	7	UTR3	UTR3:EXON_MRNA:INTRON	ETFA	ENSG00000140374.17	ENST00000690610.1:ENST00000557943.6:ENST00000692691.1:ENST00000688389.1:ENST00000687293.1:ENST00000691695.1:ENST00000685863.1:ENST00000689730.1:ENST00000687975.1:ENST00000693064.1:ENST00000688908.1:ENST00000691021.1:ENST00000433983.6:ENST00000557975.5:ENST00000267950.12:ENST00000685548.1:ENST00000565910.6:ENST00000688154.1:ENST00000560179.2:ENST00000560595.6:ENST00000560726.5:ENST00000559602.5:ENST00000560044.6:ENST00000559973.5:ENST00000559386.2:ENST00000560899.5:ENST00000685118.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	55	2	1.91916	2.32587	2.73258	0.0231902	0.00260192	0.118148	0.0470772
chr15	78894578	78894665	6069776	0	+	0.517241	(0.515,0.57]	chr15	578247	5	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MORF4L1	ENSG00000185787.15	ENST00000379535.8:ENST00000331268.9:ENST00000426013.7:ENST00000558746.5:ENST00000559345.5:ENST00000561171.5:ENST00000558502.5:ENST00000560710.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	55	2	1.97035	2.325835	2.68132	0.0195832	0.00324198	0.109483	0.0524329
chr22	30964711	30964809	7577642	0	-	0.367347	(0.35,0.378]	chr22	775375	10	INTRON	INTRON	MORC2	ENSG00000133422.14	ENST00000397641.8:ENST00000215862.8	protein_coding	protein_coding	protein_coding	protein_coding	4	53	2	1.6599	2.325815	2.99173	0.0545616	0.00713365	0.165292	0.0756118
chr2	10364578	10364678	692248	0	+	0.56	(0.515,0.57]	chr2	81139	98	INTRON	INTRON	HPCAL1	ENSG00000115756.13	ENST00000423674.5:ENST00000307845.8:ENST00000381765.7:ENST00000419810.6:ENST00000622018.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	47	2	2.11313	2.32579	2.53845	0.0256725	0.00632226	0.133676	0.0687526
chr1	193038651	193038751	612661	0	-	0.41	(0.408,0.44]	chr1	72474	86	INTRON	INTRON	UCHL5	ENSG00000116750.14	ENST00000367455.8:ENST00000367454.6:ENST00000367450.7:ENST00000367451.8:ENST00000367449.5:ENST00000367448.5:ENST00000421683.1	protein_coding	protein_coding	protein_coding	protein_coding	3	40	2	1.93243	2.3257700000000003	2.71911	0.0441194	0.0189489	0.162255	0.108861
chr11	66074623	66074723	4807911	0	+	0.42	(0.408,0.44]	chr11	447330	34	INTRON	INTRON	PACS1	ENSG00000175115.13	ENST00000320580.9:ENST00000527224.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	40	2	1.93243	2.3257700000000003	2.71911	0.0441194	0.0189489	0.162255	0.108861
chr12	98712516	98712598	5199822	0	+	0.439024	(0.408,0.44]	chr12	492000	2	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	APAF1	ENSG00000120868.14	ENST00000551964.6:ENST00000359972.6:ENST00000333991.5:ENST00000357310.5:ENST00000552268.5:ENST00000550527.5:ENST00000547045.5:ENST00000549007.1:ENST00000546491.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	40	2	1.93243	2.3257700000000003	2.71911	0.0441194	0.0189489	0.162255	0.108861
chr14	23028229	23028329	5842385	0	-	0.43	(0.408,0.44]	chr14	555479	4	SS3_PROX	SS3_PROX:INTRON	PSMB5	ENSG00000100804.19	ENST00000555895.5:ENST00000361611.11:ENST00000460922.2:ENST00000493471.2:ENST00000425762.2:ENST00000334454.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	40	2	1.93243	2.3257700000000003	2.71911	0.0441194	0.0189489	0.162255	0.108861
chr16	219549	219649	6426089	0	-	0.54	(0.515,0.57]	chr16	617437	99	INTRON	INTRON	LUC7L	ENSG00000007392.17	ENST00000337351.8:ENST00000426094.5:ENST00000397783.5:ENST00000629543.2:ENST00000490762.5:ENST00000293872.13:ENST00000419516.5:ENST00000397780.5:ENST00000418978.5:ENST00000430864.5:ENST00000443357.5:ENST00000494366.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	18	158	2	1.72065	2.3257700000000003	2.93089	0.00253147	1.05321e-4	0.0465056	0.00920724
chr2	15362991	15363091	1071150	0	-	0.43	(0.408,0.44]	chr2	114297	62	INTRON	INTRON	NBAS	ENSG00000151779.13	ENST00000281513.10:ENST00000442506.5	protein_coding	protein_coding	protein_coding	protein_coding	3	40	2	1.93243	2.3257700000000003	2.71911	0.0441194	0.0189489	0.162255	0.108861
chr19	11094582	11094680	7016864	0	+	0.469388	(0.44,0.476]	chr19	697422	33	INTRON	INTRON	LDLR	ENSG00000130164.14	ENST00000557933.5:ENST00000558518.6:ENST00000545707.5:ENST00000535915.5:ENST00000455727.6:ENST00000557958.1:ENST00000560502.5:ENST00000558013.5:ENST00000252444.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	92	2	2.26452	2.32575	2.38698	0.00654074	0.00229045	0.0735539	0.0427959
chr1	213054608	213054708	310733	0	+	0.3	(0.28,0.32]	chr1	35901	27	INTRON	INTRON	RPS6KC1	ENSG00000136643.12	ENST00000615329.4:ENST00000543354.5:ENST00000614059.4:ENST00000543470.5:ENST00000366960.8:ENST00000366959.4	protein_coding	protein_coding	protein_coding	protein_coding	3	50	2	2.13651	2.3256949999999996	2.51488	0.0380957	0.0265696	0.141678	0.134088
chr17	35691923	35692023	6600607	0	+	0.31	(0.28,0.32]	chr17	642348	87	INTRON	INTRON	AP2B1	ENSG00000006125.18	ENST00000621914.4:ENST00000620039.4:ENST00000616681.4:ENST00000610402.5:ENST00000612116.5:ENST00000618940.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	50	2	2.13651	2.3256949999999996	2.51488	0.0380957	0.0265696	0.141678	0.134088
chr2	61487664	61487764	1130685	0	-	0.32	(0.28,0.32]	chr2	121530	1	SS5_PROX	SS5_PROX:INTRON	XPO1	ENSG00000082898.19	ENST00000677110.1:ENST00000678113.1:ENST00000676553.1:ENST00000677556.1:ENST00000677814.1:ENST00000676771.1:ENST00000677803.1:ENST00000677239.1:ENST00000678790.1:ENST00000677928.1:ENST00000678182.1:ENST00000677150.1:ENST00000678172.1:ENST00000678360.1:ENST00000678081.1:ENST00000676889.1:ENST00000676783.1:ENST00000679035.1:ENST00000677422.1:ENST00000677417.1:ENST00000677813.1:ENST00000676999.1:ENST00000676667.1:ENST00000678263.1:ENST00000678877.1:ENST00000677933.1:ENST00000680228.1:ENST00000677289.1:ENST00000677190.1:ENST00000481073.6:ENST00000677476.1:ENST00000469337.2:ENST00000401558.7:ENST00000428210.5:ENST00000677290.1:ENST00000677850.1:ENST00000676778.1:ENST00000451765.6:ENST00000676789.1:ENST00000678741.1:ENST00000404992.6:ENST00000406957.5:ENST00000677157.1:ENST00000461407.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	50	2	2.13651	2.3256949999999996	2.51488	0.0380957	0.0265696	0.141678	0.134088
chr21	31717316	31717415	7437683	0	-	0.313131	(0.28,0.32]	chr21	758689	106	INTRON	INTRON	SCAF4	ENSG00000156304.15	ENST00000286835.12:ENST00000399804.5:ENST00000434667.3:ENST00000485790.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	50	2	2.13651	2.3256949999999996	2.51488	0.0380957	0.0265696	0.141678	0.134088
chr10	68766479	68766579	4442741	0	+	0.45	(0.44,0.476]	chr10	409689	4	SS5_PROX	SS5_PROX:INTRON	CCAR1	ENSG00000060339.14	ENST00000630771.2:ENST00000543719.5:ENST00000541012.5:ENST00000265872.11:ENST00000539539.5:ENST00000543229.5:ENST00000536012.5:ENST00000543225.5:ENST00000540210.5:ENST00000543706.1:ENST00000539250.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	74	2	1.56252	2.3256449999999997	3.08877	0.0465207	5.52878e-4	0.151387	0.021371
chr22	41877681	41877761	7526452	0	+	0.3625	(0.35,0.378]	chr22	769392	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SREBF2	ENSG00000198911.12	ENST00000612482.4:ENST00000361204.9:ENST00000424354.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	13	151	2	1.83061	2.3256449999999997	2.82068	0.00333649	0.00084924900000000005	0.0528877	0.0267232
chr1	226400265	226400362	648304	0	-	0.381443	(0.378,0.408]	chr1	76868	12	EXON_MRNA	EXON_MRNA:INTRON	PARP1	ENSG00000143799.14	ENST00000366794.10:ENST00000677203.1:ENST00000677884.1:ENST00000678560.1:ENST00000677091.1:ENST00000678144.1:ENST00000678781.1:ENST00000676685.1:ENST00000679276.1:ENST00000676709.1:ENST00000366792.3:ENST00000366790.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	31	2	2.26252	2.3256249999999996	2.38873	0.056222	0.0458857	0.18407	0.149888
chr10	110113215	110113315	4519453	0	+	0.39	(0.378,0.408]	chr10	416804	3	SS5_PROX	SS5_PROX:INTRON	ADD3	ENSG00000148700.15	ENST00000468251.5:ENST00000360162.7:ENST00000277900.12:ENST00000356080.9:ENST00000484622.5:ENST00000497125.5:ENST00000475954.5:ENST00000496517.5:ENST00000468345.1:ENST00000486014.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	31	2	2.26252	2.3256249999999996	2.38873	0.056222	0.0458857	0.18407	0.149888
chr11	111784669	111784768	5041887	0	-	0.40404	(0.378,0.408]	chr11	474876	26	UTR3	UTR3:EXON_MRNA	ALG9	ENSG00000086848.15	ENST00000616540.5:ENST00000532425.6	protein_coding	protein_coding	protein_coding	protein_coding	2	31	2	2.26252	2.3256249999999996	2.38873	0.056222	0.0458857	0.18407	0.149888
chr14	31123140	31123234	5858135	0	-	0.404255	(0.378,0.408]	chr14	556596	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HECTD1	ENSG00000092148.14	ENST00000399332.6:ENST00000553700.5:ENST00000555843.5:ENST00000693685.1:ENST00000692835.1:ENST00000554882.6:ENST00000611816.5:ENST00000688933.1:ENST00000691390.1:ENST00000553957.6:ENST00000555915.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	31	2	2.26252	2.3256249999999996	2.38873	0.056222	0.0458857	0.18407	0.149888
chr15	85056699	85056799	6089679	0	+	0.4	(0.378,0.408]	chr15	579504	740	INTRON	INTRON	PDE8A	ENSG00000073417.15	ENST00000310298.8:ENST00000557957.5:ENST00000394553.6:ENST00000339708.9:ENST00000478717.5:ENST00000485596.5:ENST00000559742.5:ENST00000559086.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	31	2	2.26252	2.3256249999999996	2.38873	0.056222	0.0458857	0.18407	0.149888
chr3	141553156	141553256	1525310	0	+	0.4	(0.378,0.408]	chr3	158846	122	INTRON	INTRON	RASA2	ENSG00000155903.14	ENST00000286364.9	protein_coding	protein_coding	protein_coding	protein_coding	2	31	2	2.26252	2.3256249999999996	2.38873	0.056222	0.0458857	0.18407	0.149888
chr4	153363125	153363225	2066723	0	+	0.38	(0.378,0.408]	chr4	204525	1	SS5_PROX	SS5_PROX:INTRON	MND1	ENSG00000121211.8	ENST00000622785.4:ENST00000509752.5:ENST00000240488.8:ENST00000508731.5:ENST00000504860.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	31	2	2.26252	2.3256249999999996	2.38873	0.056222	0.0458857	0.18407	0.149888
chr6	88850326	88850422	3157998	0	-	0.395833	(0.378,0.408]	chr6	294209	1	INTRON	INTRON	RNGTT	ENSG00000111880.16	ENST00000369485.9:ENST00000369475.7:ENST00000627296.1:ENST00000538899.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	31	2	2.26252	2.3256249999999996	2.38873	0.056222	0.0458857	0.18407	0.149888
chr3	142185206	142185305	1835744	0	-	0.454545	(0.44,0.476]	chr3	184433	6	UTR3	UTR3:EXON_MRNA:INTRON	GK5	ENSG00000175066.16	ENST00000392993.7:ENST00000492097.5:ENST00000480757.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	90	2	1.59737	2.32555	3.05373	0.0234794	6.56725e-4	0.118716	0.0232396
chr5	151801957	151802055	2522128	0	+	0.510204	(0.476,0.515]	chr5	241366	7	INTRON	INTRON	G3BP1	ENSG00000145907.16	ENST00000678070.1:ENST00000678964.1:ENST00000678925.1:ENST00000394123.7:ENST00000676978.1:ENST00000679289.1:ENST00000677493.1:ENST00000676644.1:ENST00000677757.1:ENST00000522761.6:ENST00000676827.1:ENST00000520177.6:ENST00000676634.1:ENST00000678854.1:ENST00000676911.1:ENST00000356245.8:ENST00000678646.1:ENST00000677381.1:ENST00000678904.1:ENST00000678910.1:ENST00000678101.1:ENST00000677105.1:ENST00000678369.1:ENST00000678564.1:ENST00000677923.1:ENST00000677323.1:ENST00000677687.1:ENST00000679193.1:ENST00000678825.1:ENST00000678657.1:ENST00000676507.1:ENST00000678612.1:ENST00000676715.1:ENST00000676899.1:ENST00000677658.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	79	2	2.11679	2.3254900000000003	2.53419	0.0115627	0.00251905	0.0962115	0.0446195
chr1	111164581	111164680	183975	0	+	0.343434	(0.32,0.35]	chr1	20432	29	INTRON	INTRON	CEPT1	ENSG00000134255.15	ENST00000545121.5:ENST00000498239.5:ENST00000357172.9:ENST00000460443.5:ENST00000478042.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	116	2	1.91414	2.325465	2.73679	0.011737	9.3145e-4	0.0894475	0.0278746
chr12	122591553	122591653	5241276	0	+	0.31	(0.28,0.32]	chr12	497798	1	SS5_PROX	SS5_PROX:INTRON	KNTC1	ENSG00000184445.12	ENST00000450485.6:ENST00000333479.12	protein_coding	protein_coding	protein_coding	protein_coding	9	139	2	1.83163	2.3253950000000003	2.81916	0.00983832	0.00117007	0.0877296	0.0312141
chr21	39310944	39311044	7465516	0	-	0.52	(0.515,0.57]	chr21	760568	120	INTRON	INTRON	BRWD1	ENSG00000185658.14	ENST00000333229.6:ENST00000342449.8:ENST00000380800.7:ENST00000341322.4:ENST00000470108.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	18	177	2	2.04922	2.325375	2.60153	5.20916e-4	1.77043e-4	0.0204523	0.0121697
chr21	38066763	38066863	7463549	0	-	0.56	(0.515,0.57]	chr21	760281	116	INTRON	INTRON	DSCR4	ENSG00000184029.9	ENST00000398948.5:ENST00000328264.7	lncRNA	lncRNA	lncRNA	lncRNA	6	66	2	2.28534	2.32534	2.36534	0.0061678	0.00404547	0.067653	0.0578376
chr10	71823787	71823887	4642556	0	-	0.42	(0.408,0.44]	chr10	427138	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	PSAP	ENSG00000197746.15	ENST00000394936.8:ENST00000633965.1	protein_coding	protein_coding	protein_coding	protein_coding	13	95	2	1.12597	2.3253399999999997	3.52471	0.0479007	0.00112428	0.170844	0.0306963
chr12	11044331	11044431	5268234	0	-	0.41	(0.408,0.44]	chr12	502239	91	INTRON	INTRON	ENSG00000275778:PRH1	ENSG00000275778.2:ENSG00000231887.8	ENST00000536668.2:ENST00000535024.6:ENST00000539853.5:ENST00000541977.5:ENST00000536086.2:ENST00000534923.1:ENST00000541456.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	54	2	2.00228	2.325285	2.64829	0.0389732	0.00400062	0.143072	0.057767
chr18	9600833	9600932	6946182	0	-	0.383838	(0.378,0.408]	chr18	687041	12	INTRON	INTRON	PPP4R1	ENSG00000154845.16	ENST00000400555.7:ENST00000400556.8:ENST00000285124.12:ENST00000578875.5:ENST00000578178.5:ENST00000583903.5:ENST00000584074.5:ENST00000579415.5:ENST00000581250.5:ENST00000580745.5:ENST00000580182.5:ENST00000582240.5:ENST00000581835.1:ENST00000583092.1:ENST00000577779.1:ENST00000580283.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	67	2	2.26009	2.325285	2.39048	0.0188651	0.00395852	0.108861	0.057511
chr1	11021723	11021823	24654	0	+	0.49	(0.476,0.515]	chr1	2600	2	SS3_PROX	SS3_PROX:INTRON	TARDBP	ENSG00000120948.19	ENST00000639083.1:ENST00000639599.1:ENST00000629725.2:ENST00000439080.6:ENST00000240185.8:ENST00000472476.5:ENST00000614757.4:ENST00000621715.4:ENST00000473869.5:ENST00000315091.7:ENST00000616545.4:ENST00000621790.4:ENST00000649624.1:ENST00000622057.4:ENST00000617172.4:ENST00000611963.4:ENST00000619555.4:ENST00000620632.4:ENST00000610369.4:ENST00000614494.1:ENST00000611136.4:ENST00000477447.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	76	2	1.23327	2.325275	3.41728	0.0507667	0.00165726	0.175935	0.0369207
chr7	105009911	105010010	3601050	0	-	0.282828	(0.28,0.32]	chr7	336035	261	INTRON	INTRON	LINC01004	ENSG00000228393.5	ENST00000450686.1:ENST00000655204.2:ENST00000445184.1	lncRNA	lncRNA	lncRNA	lncRNA	6	94	2	2.17818	2.3251049999999998	2.47203	0.0114089	0.00555379	0.0886611	0.0675078
chr16	81465005	81465105	6405199	0	+	0.38	(0.378,0.408]	chr16	615026	191	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8	protein_coding	protein_coding	protein_coding	protein_coding	5	67	2	2.09402	2.3250450000000003	2.55607	0.0126438	0.00704647	0.0982897	0.0718189
chr19	57825224	57825323	7105778	0	+	0.323232	(0.32,0.35]	chr19	713201	43	INTRON	INTRON	ENSG00000268750:ZNF587B	ENSG00000268750.7:ENSG00000269343.9	ENST00000597134.5:ENST00000651253.2:ENST00000596498.2:ENST00000593873.6:ENST00000603271.1:ENST00000594328.1:ENST00000598031.1	protein_coding	protein_coding	protein_coding	protein_coding	3	46	2	2.13945	2.32503	2.51061	0.0364463	0.0254517	0.138959	0.133676
chr17	30135424	30135524	6587576	0	+	0.41	(0.408,0.44]	chr17	640563	73	INTRON	INTRON	NSRP1	ENSG00000126653.18	ENST00000540900.7:ENST00000612959.4:ENST00000247026.10:ENST00000577289.6:ENST00000584154.5:ENST00000394826.8:ENST00000475652.5:ENST00000584317.5:ENST00000583301.5:ENST00000585881.5:ENST00000467446.6:ENST00000580103.6:ENST00000581048.5:ENST00000588614.1:ENST00000589608.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	54	2	2.31565	2.32498	2.33431	0.0154718	0.0129219	0.100909	0.0990564
chr2	87470648	87470748	826075	0	+	0.42	(0.408,0.44]	chr2	92414	6	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	CYTOR:ENSG00000284879	ENSG00000222041.12:ENSG00000284879.1	ENST00000642796.1:ENST00000643589.1:ENST00000642451.1:ENST00000646386.1:ENST00000644478.1:ENST00000409139.6:ENST00000331944.10:ENST00000644125.1:ENST00000643743.1:ENST00000644577.1:ENST00000643276.1:ENST00000409898.2:ENST00000419680.6:ENST00000645257.1:ENST00000644976.1:ENST00000643070.1:ENST00000646855.1:ENST00000414584.1:ENST00000455131.5:ENST00000646636.1:ENST00000642293.1:ENST00000423846.5:ENST00000644040.1:ENST00000645138.1:ENST00000437561.2:ENST00000629257.1:ENST00000414030.6	lncRNA	lncRNA	lncRNA	lncRNA	4	54	2	2.31565	2.32498	2.33431	0.0154718	0.0129219	0.100909	0.0990564
chrX	24175543	24175643	7631265	0	+	0.41	(0.408,0.44]	chrX	781549	1	SS5_PROX	SS5_PROX:INTRON	ZFX	ENSG00000005889.16	ENST00000428571.5:ENST00000539115.5:ENST00000379188.7:ENST00000304543.10:ENST00000419690.5:ENST00000379177.5:ENST00000459724.1:ENST00000338565.3:ENST00000474385.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	54	2	2.31565	2.32498	2.33431	0.0154718	0.0129219	0.100909	0.0990564
chr6	16136299	16136398	2825845	0	+	0.393939	(0.378,0.408]	chr6	265309	52	INTRON	INTRON	MYLIP	ENSG00000007944.15	ENST00000356840.8:ENST00000349606.4	protein_coding	protein_coding	protein_coding	protein_coding	11	113	2	1.61107	2.324975	3.03888	0.0105	0.00102794	0.0907259	0.029231300000000002
chr2	48320989	48321089	777382	0	+	0.31	(0.28,0.32]	chr2	87463	58	INTRON	INTRON	FOXN2	ENSG00000170802.17	ENST00000413569.5:ENST00000340553.8	protein_coding	protein_coding	protein_coding	protein_coding	2	37	2	2.18975	2.3249649999999997	2.46018	0.0776042	0.0375904	0.196285	0.156054
chr2	61214694	61214794	1127906	0	-	0.29	(0.28,0.32]	chr2	121155	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000411912.5:ENST00000463046.5:ENST00000476716.5:ENST00000472689.5:ENST00000472706.5:ENST00000490527.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	37	2	2.18975	2.3249649999999997	2.46018	0.0776042	0.0375904	0.196285	0.156054
chr5	62358599	62358699	2362569	0	+	0.29	(0.28,0.32]	chr5	227772	3	SS5_PROX	SS5_PROX:INTRON	KIF2A	ENSG00000068796.19	ENST00000401507.7:ENST00000407818.8:ENST00000674632.1:ENST00000674916.1:ENST00000676413.1:ENST00000676122.1:ENST00000674751.1:ENST00000514082.6:ENST00000381103.7:ENST00000676271.1:ENST00000674733.1:ENST00000506857.5:ENST00000674752.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	37	2	2.18975	2.3249649999999997	2.46018	0.0776042	0.0375904	0.196285	0.156054
chr6	20576956	20577056	2828810	0	+	0.32	(0.28,0.32]	chr6	265649	174	INTRON	INTRON	CDKAL1	ENSG00000145996.11	ENST00000274695.8:ENST00000378610.1	protein_coding	protein_coding	protein_coding	protein_coding	2	37	2	2.18975	2.3249649999999997	2.46018	0.0776042	0.0375904	0.196285	0.156054
chr1	50783705	50783805	450487	0	-	0.48	(0.476,0.515]	chr1	54249	386	INTRON	INTRON	FAF1	ENSG00000185104.21	ENST00000396153.7:ENST00000487898.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	67	2	1.74317	2.3249250000000004	2.90668	0.0396373	0.00164243	0.161534	0.0369207
chr3	125468453	125468553	1807338	0	-	0.44	(0.408,0.44]	chr3	181513	72	INTRON	INTRON	SNX4	ENSG00000114520.11	ENST00000251775.9:ENST00000471751.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	55	2	1.7519	2.324925	2.89795	0.0239555	0.0110735	0.129259	0.0873897
chr3	100300794	100300891	1465978	0	+	0.257732	[0,0.28]	chr3	153645	11	INTRON	INTRON	TBC1D23	ENSG00000036054.13	ENST00000394144.9:ENST00000344949.9:ENST00000486274.5:ENST00000475134.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	57	2	2.15457	2.32492	2.49527	0.0436497	0.0269306	0.14882	0.135288
chr11	83162706	83162800	4840851	0	+	0.329787	(0.32,0.35]	chr11	451500	9	INTRON	INTRON	PCF11	ENSG00000165494.12	ENST00000298281.8:ENST00000530660.5:ENST00000690938.1:ENST00000530304.5:ENST00000533018.1	protein_coding	protein_coding	protein_coding	protein_coding	3	46	2	2.01768	2.32489	2.6321	0.0361337	0.0268	0.152563	0.123349
chr7	102175793	102175892	3369963	0	+	0.333333	(0.32,0.35]	chr7	315286	49	INTRON	INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000560541.5:ENST00000558836.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	46	2	2.01768	2.32489	2.6321	0.0361337	0.0268	0.152563	0.123349
chr1	207787058	207787157	305265	0	+	0.474747	(0.44,0.476]	chr1	35136	15	EXON_MRNA	EXON_MRNA:INTRON	CD46	ENSG00000117335.21	ENST00000695779.1:ENST00000695777.1:ENST00000695778.1:ENST00000496723.2:ENST00000695782.1:ENST00000695781.1:ENST00000695780.1:ENST00000636114.2:ENST00000367042.6:ENST00000322875.8:ENST00000322918.9:ENST00000354848.5:ENST00000357714.5:ENST00000358170.6:ENST00000367041.5:ENST00000367047.5:ENST00000695783.1:ENST00000695784.1:ENST00000469535.5:ENST00000360212.6:ENST00000480003.5:ENST00000695786.1:ENST00000490278.2:ENST00000488596.5:ENST00000462968.2:ENST00000695787.1:ENST00000695788.1:ENST00000695789.1:ENST00000695790.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	64	2	2.26452	2.3248550000000003	2.38519	0.012193	0.00654074	0.0910127	0.0735539
chr1	207687255	207687355	304373	0	+	0.33	(0.32,0.35]	chr1	35014	29	INTRON	INTRON	CR1L	ENSG00000197721.17	ENST00000508064.7:ENST00000530905.1:ENST00000294997.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	97	2	1.72073	2.32483	2.92893	0.0228737	0.00138	0.118056	0.0341261
chr16	22500675	22500774	6322612	0	+	0.353535	(0.35,0.378]	chr16	605439	85	INTRON	INTRON	NPIPB5	ENSG00000243716.11	ENST00000415654.5:ENST00000415833.6:ENST00000546168.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	176	2	2.12509	2.324795	2.5245	0.00184388	5.08877e-4	0.0388609	0.0202389
chrX	123705472	123705570	7878781	0	-	0.255102	[0,0.28]	chrX	802582	16	INTRON	INTRON	THOC2	ENSG00000125676.20	ENST00000245838.13:ENST00000355725.8:ENST00000433883.1:ENST00000419789.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	57	2	2.00649	2.32479	2.64309	0.040391	0.0308646	0.161534	0.13151
chr8	102404579	102404679	4012675	0	-	0.52	(0.515,0.57]	chr8	367237	426	INTRON	INTRON	UBR5	ENSG00000104517.13	ENST00000520539.6:ENST00000220959.8:ENST00000521922.5	protein_coding	protein_coding	protein_coding	protein_coding	6	63	2	2.16051	2.324765	2.48902	0.00760558	0.0046825	0.0749571	0.0631419
chr9	92253746	92253844	4286923	0	-	0.438776	(0.408,0.44]	chr9	394155	4	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	IARS1	ENSG00000196305.19	ENST00000375643.7:ENST00000443024.7:ENST00000447699.7:ENST00000683537.1:ENST00000684726.1:ENST00000683192.1:ENST00000683565.1:ENST00000682756.1:ENST00000684542.1:ENST00000683793.1:ENST00000683817.1:ENST00000682141.1:ENST00000682893.1:ENST00000684557.1:ENST00000498025.2:ENST00000682156.1:ENST00000683017.1:ENST00000627121.3:ENST00000683469.1:ENST00000683495.1:ENST00000682578.1:ENST00000682533.1:ENST00000472894.2:ENST00000684757.1:ENST00000684445.1:ENST00000683376.1:ENST00000683679.1:ENST00000683119.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	90	2	1.92735	2.324715	2.72208	0.00550465	0.00364449	0.0672816	0.0535094
chr2	32364750	32364850	730855	0	+	0.44	(0.408,0.44]	chr2	84274	69	INTRON	INTRON	BIRC6	ENSG00000115760.15	ENST00000421745.7:ENST00000648282.1	protein_coding	protein_coding	protein_coding	protein_coding	9	97	2	1.50103	2.3246700000000002	3.14831	0.0237058	5.86664e-4	0.129075	0.022457
chr19	28511029	28511129	7166205	0	-	0.44	(0.408,0.44]	chr19	724189	428	INTRON	INTRON	ENSG00000283403:ENSG00000267243	ENSG00000283403.1:ENSG00000267243.6	ENST00000592347.5:ENST00000593065.5	lncRNA	lncRNA	lncRNA	lncRNA	17	192	2	1.85089	2.32466	2.79843	0.00194301	1.60788e-4	0.0409869	0.0116076
chr14	103448020	103448120	5826262	0	+	0.52	(0.515,0.57]	chr14	552839	61	INTRON	INTRON	MARK3	ENSG00000075413.19	ENST00000678179.1:ENST00000676838.1:ENST00000677348.1:ENST00000677404.1:ENST00000676694.1:ENST00000676938.1:ENST00000678619.1:ENST00000676897.1:ENST00000677214.1:ENST00000677942.1:ENST00000676830.1:ENST00000678999.1:ENST00000677228.1:ENST00000556744.2:ENST00000677104.1:ENST00000679330.1:ENST00000560417.6:ENST00000440884.7:ENST00000676475.1:ENST00000677035.1:ENST00000678022.1:ENST00000677560.1:ENST00000561314.6:ENST00000429436.7:ENST00000677118.1:ENST00000676564.1:ENST00000678169.1:ENST00000678175.1:ENST00000678897.1:ENST00000678278.1:ENST00000676645.1:ENST00000677829.1:ENST00000678302.1:ENST00000677133.1:ENST00000561164.2:ENST00000558223.6:ENST00000559328.6:ENST00000678207.1:ENST00000677360.1:ENST00000676905.1:ENST00000678343.1:ENST00000677347.1:ENST00000678071.1:ENST00000677432.1:ENST00000678237.1:ENST00000677604.1:ENST00000676518.1:ENST00000677051.1:ENST00000677857.1:ENST00000677869.1:ENST00000678423.1:ENST00000560603.6:ENST00000416682.6:ENST00000303622.13:ENST00000216288.11:ENST00000679105.1:ENST00000553942.5:ENST00000335102.9:ENST00000561225.1:ENST00000678091.1:ENST00000561071.5:ENST00000558698.5:ENST00000559268.5:ENST00000560731.5:ENST00000676745.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	64	2	2.02107	2.32462	2.62817	0.00910188	0.004048	0.0809976	0.0578376
chr14	19077238	19077337	5655180	0	+	0.393939	(0.378,0.408]	chr14	539025	20	INTRON	INTRON	DUXAP9	ENSG00000225210.10	ENST00000547220.5:ENST00000610585.4:ENST00000621361.4:ENST00000619938.1:ENST00000644980.1:ENST00000619210.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	7	85	2	2.01851	2.32454	2.63057	0.00559022	0.0053733	0.0678837	0.0642754
chr10	48317141	48317241	4431093	0	+	0.43	(0.408,0.44]	chr10	408563	85	INTRON	INTRON	MAPK8	ENSG00000107643.17	ENST00000395611.7:ENST00000432379.5:ENST00000374189.6:ENST00000429041.6:ENST00000374179.8:ENST00000426557.5:ENST00000476134.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	99	2	1.85142	2.324525	2.79763	0.0127811	5.76635e-4	0.0926667	0.0218153
chr1	212888694	212888781	310152	0	+	0.494253	(0.476,0.515]	chr1	35825	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	FLVCR1	ENSG00000162769.13	ENST00000366971.9:ENST00000419102.1:ENST00000483790.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	88	2	2.24612	2.32451	2.4029	0.00799949	0.0016811	0.0766625	0.0381232
chr10	35343397	35343497	4424571	0	+	0.51	(0.476,0.515]	chr10	407899	58	INTRON	INTRON	CCNY	ENSG00000108100.18	ENST00000374706.5:ENST00000490012.6:ENST00000493157.6:ENST00000374704.8:ENST00000265375.13:ENST00000339497.7:ENST00000492478.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	71	2	1.27247	2.324395	3.37632	0.0520408	0.00195267	0.176908	0.0400465
chr22	21508843	21508943	7560179	0	-	0.53	(0.515,0.57]	chr22	773318	164	INTRON	INTRON	PI4KAP2	ENSG00000183506.17	ENST00000450651.5:ENST00000467443.5:ENST00000479693.1:ENST00000476537.1:ENST00000491562.5	transcribed_unitary_pseudogene	retained_intron	transcribed_unitary_pseudogene	retained_intron:processed_transcript	9	83	2	1.56082	2.3243549999999997	3.08789	0.0193183	4.83127e-4	0.108861	0.0199261
chr11	3785535	3785635	4895055	0	-	0.49	(0.476,0.515]	chr11	458931	30	INTRON	INTRON	NUP98	ENSG00000110713.17	ENST00000359171.8:ENST00000324932.12:ENST00000650171.1:ENST00000355260.7:ENST00000397004.8:ENST00000397007.8:ENST00000532475.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	55	2	1.79693	2.32435	2.85177	0.0649782	0.00169916	0.179417	0.0381936
chr7	129625986	129626086	3412264	0	+	0.49	(0.476,0.515]	chr7	319009	138	INTRON	INTRON	NRF1	ENSG00000106459.15	ENST00000393232.6:ENST00000477428.5:ENST00000454688.5:ENST00000223190.8:ENST00000311967.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	55	2	1.79693	2.32435	2.85177	0.0649782	0.00169916	0.179417	0.0381936
chr17	62048352	62048452	6810711	0	-	0.33	(0.32,0.35]	chr17	672946	124	INTRON	INTRON	MED13	ENSG00000108510.10	ENST00000397786.7	protein_coding	protein_coding	protein_coding	protein_coding	21	296	2	2.21783	2.324325	2.43082	0.00180423	6.23578e-5	0.0382814	0.00657207
chr19	28538976	28539076	7166485	0	-	0.43	(0.408,0.44]	chr19	724193	38	INTRON	INTRON	ENSG00000283403	ENSG00000283403.1	ENST00000592347.5	lncRNA	lncRNA	lncRNA	lncRNA	4	48	2	1.69566	2.32431	2.95296	0.0453922	0.00929354	0.164236	0.0817766
chr6	111273711	111273811	2939923	0	+	0.43	(0.408,0.44]	chr6	276923	67	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	MFSD4B	ENSG00000173214.7	ENST00000671876.2:ENST00000672750.1:ENST00000672191.1:ENST00000671883.1:ENST00000673446.1:ENST00000444259.2:ENST00000653951.2:ENST00000673245.1:ENST00000673164.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	48	2	1.69566	2.32431	2.95296	0.0453922	0.00929354	0.164236	0.0817766
chr9	127557050	127557150	4355931	0	-	0.52	(0.515,0.57]	chr9	399847	249	INTRON	INTRON	NIBAN2	ENSG00000136830.12	ENST00000373314.7:ENST00000373312.4:ENST00000478917.1:ENST00000468379.1:ENST00000484348.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	35	2	2.08547	2.324265	2.56306	0.0289426	0.0247751	0.131869	0.1274
chr17	15540018	15540116	6732232	0	-	0.479592	(0.476,0.515]	chr17	660307	20	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TVP23C-CDRT4:TVP23C	ENSG00000259024.6:ENSG00000175106.17	ENST00000522212.6:ENST00000557349.5:ENST00000481756.7:ENST00000518506.4:ENST00000225576.7:ENST00000581273.5:ENST00000518321.6:ENST00000584811.5:ENST00000428082.6:ENST00000438826.7:ENST00000523573.5:ENST00000521179.5:ENST00000583206.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	15	180	2	2.09217	2.3242149999999997	2.55626	9.83317e-4	3.20012e-4	0.0288314	0.0165409
chr1	19102141	19102237	385628	0	-	0.479167	(0.476,0.515]	chr1	45699	1	INTRON	INTRON	UBR4	ENSG00000127481.15	ENST00000375254.8:ENST00000375224.1	protein_coding	protein_coding	protein_coding	protein_coding	4	49	2	2.16306	2.324165	2.48527	0.03496	0.00973468	0.13747500000000001	0.0877284
chr1	1563637	1563736	360210	0	-	0.484848	(0.476,0.515]	chr1	41848	29	UTR3	UTR3:EXON_MRNA:INTRON	SSU72	ENSG00000160075.12	ENST00000291386.4:ENST00000378725.3:ENST00000359060.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	114	2	2.0107	2.32415	2.6376	0.00572098	6.87765e-4	0.0681402	0.0240091
chr8	23020522	23020620	3923447	0	-	0.540816	(0.515,0.57]	chr8	359060	5	UTR3	UTR3:EXON_MRNA	TNFRSF10B	ENSG00000120889.13	ENST00000276431.9:ENST00000523752.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	55	2	2.06206	2.32415	2.58624	0.0135396	0.00526399	0.101363	0.0633874
chr16	58571518	58571618	6495779	0	-	0.37	(0.35,0.378]	chr16	628558	108	INTRON	INTRON	CNOT1	ENSG00000125107.19	ENST00000317147.10:ENST00000569240.5:ENST00000567188.5:ENST00000441024.6:ENST00000569882.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	32	2	2.1617	2.324135	2.48657	0.0771502	0.032907	0.196285	0.145164
chr3	150606871	150606970	1534482	0	+	0.353535	(0.35,0.378]	chr3	159930	28	INTRON	INTRON	SELENOT	ENSG00000198843.14	ENST00000480740.5:ENST00000477889.5:ENST00000471696.6:ENST00000492132.1:ENST00000485923.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	32	2	2.1617	2.324135	2.48657	0.0771502	0.032907	0.196285	0.145164
chr4	139162178	139162278	2247197	0	-	0.37	(0.35,0.378]	chr4	219601	223	INTRON	INTRON	ELF2	ENSG00000109381.21	ENST00000394235.6:ENST00000686138.1:ENST00000511184.5:ENST00000511006.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	32	2	2.1617	2.324135	2.48657	0.0771502	0.032907	0.196285	0.145164
chr7	133737705	133737805	3423028	0	+	0.37	(0.35,0.378]	chr7	319395	1072	INTRON	INTRON	EXOC4	ENSG00000131558.15	ENST00000253861.5:ENST00000479839.6:ENST00000483800.5:ENST00000469115.5:ENST00000489931.5:ENST00000482089.5:ENST00000460346.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	32	2	2.1617	2.324135	2.48657	0.0771502	0.032907	0.196285	0.145164
chr1	1658081	1658164	360609	0	-	0.578313	(0.57,1]	chr1	41965	2	INTRON	INTRON	CDK11B	ENSG00000248333.9	ENST00000341832.11:ENST00000407249.7:ENST00000340677.9:ENST00000611150.3:ENST00000615951.4:ENST00000626918.2:ENST00000629289.2:ENST00000629312.2:ENST00000341028.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	34	2	1.83769	2.32413	2.81057	0.0297587	0.00169295	0.12908	0.0381936
chr2	144428584	144428682	1240877	0	-	0.306122	(0.28,0.32]	chr2	131694	22	EXON_MRNA	EXON_MRNA:INTRON	ZEB2	ENSG00000169554.23	ENST00000636471.1:ENST00000627532.3:ENST00000638128.1:ENST00000637304.1:ENST00000636179.1:ENST00000636820.1:ENST00000637045.1:ENST00000636413.1:ENST00000638007.1:ENST00000638087.1:ENST00000419938.5:ENST00000409487.7:ENST00000440875.6:ENST00000636732.2:ENST00000636026.2:ENST00000675069.1:ENST00000689298.1:ENST00000539609.7:ENST00000558170.6:ENST00000303660.8:ENST00000427902.5:ENST00000637267.2:ENST00000392861.6:ENST00000431672.4:ENST00000409211.5:ENST00000465308.5:ENST00000434448.5:ENST00000472146.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	69	2	1.64429	2.32412	3.00395	0.0365539	0.0101329	0.153932	0.0850389
chr5	139562907	139563006	2500519	0	+	0.434343	(0.408,0.44]	chr5	239026	1	INTRON	INTRON	UBE2D2	ENSG00000131508.16	ENST00000511725.5:ENST00000505007.5:ENST00000398733.8:ENST00000510470.1:ENST00000398734.8:ENST00000505548.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	24	290	2	2.17889	2.3241199999999997	2.46935	2.07862e-4	1.49217e-4	0.0125783	0.0111867
chr7	121217019	121217119	3395939	0	+	0.36	(0.35,0.378]	chr7	317781	670	INTRON	INTRON	CPED1	ENSG00000106034.18	ENST00000310396.10:ENST00000450913.6:ENST00000423795.5:ENST00000466055.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	16	209	2	2.08299	2.32411	2.56523	9.01539e-4	4.10289e-4	0.0275283	0.0186083
chr14	64926180	64926280	5751932	0	+	0.39	(0.378,0.408]	chr14	546391	1	SS5_PROX	SS5_PROX:INTRON	CHURC1:CHURC1-FNTB	ENSG00000258289.10:ENSG00000125954.13	ENST00000607599.6:ENST00000548752.7:ENST00000551947.6:ENST00000549115.7:ENST00000552002.7:ENST00000551093.6:ENST00000552941.6:ENST00000549987.1:ENST00000547625.1:ENST00000551823.1:ENST00000553743.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	50	2	1.59317	2.324095	3.05502	0.0603812	0.00689519	0.19151	0.0717484
chr11	70415362	70415462	4821789	0	+	0.61	(0.57,1]	chr11	449623	3	SS3_PROX	SS3_PROX:INTRON	CTTN	ENSG00000085733.16	ENST00000346329.7:ENST00000301843.13:ENST00000376561.7:ENST00000415461.2:ENST00000525276.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	34	2	2.16779	2.32386	2.47993	0.00900694	0.007207	0.0803518	0.0756278
chr2	131305798	131305898	866449	0	+	0.51	(0.476,0.515]	chr2	97330	23	INTRON	INTRON	PLEKHB2:FAR2P4:ENSG00000284604	ENSG00000115762.17:ENSG00000231431.7:ENSG00000284604.1	ENST00000404460.5:ENST00000425399.1:ENST00000641806.1	protein_coding	protein_coding	protein_coding:lncRNA:transcribed_unprocessed_pseudogene	protein_coding:lncRNA:transcribed_unprocessed_pseudogene	7	89	2	2.2344	2.3238399999999997	2.41328	0.00432475	0.00355364	0.0579331	0.0547657
chr9	137626643	137626742	4223548	0	+	0.474747	(0.44,0.476]	chr9	388152	62	INTRON	INTRON	EHMT1	ENSG00000181090.21	ENST00000462484.5:ENST00000371394.6:ENST00000630754.2:ENST00000460843.6:ENST00000626216.2:ENST00000637593.1:ENST00000629335.2:ENST00000637335.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	40	2	1.9039	2.32381	2.74372	0.0501498	0.0153007	0.156383	0.108569
chr11	86051478	86051578	5014667	0	-	0.48	(0.476,0.515]	chr11	473022	195	INTRON	INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000630913.2:ENST00000528398.5:ENST00000356360.9:ENST00000534412.5:ENST00000531558.1:ENST00000531930.5:ENST00000532041.5:ENST00000525162.5:ENST00000528256.1:ENST00000528411.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	12	146	2	1.87075	2.32371	2.77667	0.00621846	1.08367e-4	0.0680637	0.00880907
chr20	63273281	63273360	7299629	0	+	0.670886	(0.57,1]	chr20	742738	2	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	ARFGAP1	ENSG00000101199.13	ENST00000519273.6:ENST00000519604.5:ENST00000523114.5:ENST00000547204.5:ENST00000522959.5:ENST00000549047.5:ENST00000370283.9:ENST00000523460.5:ENST00000520485.5:ENST00000524192.6:ENST00000519531.5:ENST00000370275.8:ENST00000518601.6:ENST00000353546.7:ENST00000522403.6:ENST00000550188.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	38	2	1.8633	2.323695	2.78409	0.0116033	0.0066826	0.0889104	0.0738715
chr1	91142	91239	352286	0	-	0.453608	(0.44,0.476]	chr1	40767	20	EXON_LNCRNA	EXON_LNCRNA	ENSG00000238009	ENSG00000238009.6	ENST00000466430.5	lncRNA	lncRNA	lncRNA	lncRNA	10	106	2	1.59359	2.32366	3.05373	0.0156777	6.56725e-4	0.101453	0.0232396
chr14	30561641	30561741	5674410	0	+	0.41	(0.408,0.44]	chr14	540499	4	INTRON	INTRON	G2E3	ENSG00000092140.16	ENST00000206595.11:ENST00000438909.6:ENST00000544007.5:ENST00000550944.5:ENST00000552488.1:ENST00000648008.1:ENST00000553504.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	78	2	2.29777	2.323585	2.3494	0.0067764	0.00462504	0.0711802	0.062717
chr12	112377257	112377357	5417703	0	-	0.36	(0.35,0.378]	chr12	517670	572	INTRON	INTRON	HECTD4	ENSG00000173064.14	ENST00000550722.5:ENST00000377560.9:ENST00000682272.1:ENST00000550724.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	43	2	2.10859	2.323575	2.53856	0.0326077	0.0272722	0.136494	0.133687
chr7	111373073	111373173	3622213	0	-	0.36	(0.35,0.378]	chr7	337093	4092	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	66	2	1.43253	2.323545	3.21456	0.0486238	0.00420814	0.173047	0.0572185
chr1	218308032	218308132	317396	0	+	0.41	(0.408,0.44]	chr1	36398	4	SS5_PROX	SS5_PROX:INTRON	RRP15	ENSG00000067533.6	ENST00000366932.4	protein_coding	protein_coding	protein_coding	protein_coding	5	65	2	1.74108	2.32354	2.906	0.0424099	0.00131817	0.148082	0.0333932
chr3	197883964	197884063	1598677	0	+	0.424242	(0.408,0.44]	chr3	165690	4	UTR3	UTR3:EXON_MRNA	LRCH3	ENSG00000186001.14	ENST00000438796.6:ENST00000425562.7:ENST00000433298.5	protein_coding	protein_coding	protein_coding	protein_coding	6	64	2	1.9279	2.323505	2.71911	0.0189489	0.00807087	0.108861	0.0806514
chr1	246629700	246629800	350620	0	+	0.38	(0.378,0.408]	chr1	40508	77	INTRON	INTRON	CNST	ENSG00000162852.14	ENST00000483271.1:ENST00000366513.9:ENST00000366512.7:ENST00000366511.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	68	2	1.94559	2.3235	2.70141	0.0211434	0.00411614	0.122929	0.0564981
chr6	85639530	85639625	3151416	0	-	0.4	(0.378,0.408]	chr6	293897	15	INTRON	INTRON	ENSG00000271793:SYNCRIP	ENSG00000271793.2:ENSG00000135316.19	ENST00000682083.1:ENST00000683074.1:ENST00000682504.1:ENST00000682106.1:ENST00000683364.1:ENST00000683436.1:ENST00000684220.1:ENST00000684462.1:ENST00000616122.5:ENST00000678528.1:ENST00000676637.1:ENST00000677771.1:ENST00000355238.11:ENST00000678878.1:ENST00000677481.1:ENST00000676630.1:ENST00000678618.1:ENST00000676542.1:ENST00000677059.1:ENST00000444272.2:ENST00000678899.1:ENST00000369622.8:ENST00000678355.1:ENST00000676688.1:ENST00000677514.1:ENST00000678816.1:ENST00000678930.1:ENST00000678589.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	68	2	1.94559	2.3235	2.70141	0.0211434	0.00411614	0.122929	0.0564981
chr11	31464299	31464397	4938782	0	-	0.357143	(0.35,0.378]	chr11	462579	6	INTRON	INTRON	IMMP1L	ENSG00000148950.11	ENST00000532287.6:ENST00000534812.5:ENST00000526776.5:ENST00000278200.5:ENST00000648582.1:ENST00000533642.1:ENST00000527184.5:ENST00000528161.5:ENST00000532624.5:ENST00000529749.5:ENST00000530023.5:ENST00000531693.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	43	2	2.04358	2.323495	2.60341	0.0329533	0.0275785	0.145171	0.123904
chr12	46360038	46360135	5316560	0	-	0.402062	(0.378,0.408]	chr12	505763	20	UTR3	UTR3:EXON_MRNA	SLC38A2	ENSG00000134294.14	ENST00000256689.10:ENST00000549258.5:ENST00000551374.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	22	236	2	1.57318	2.32349	3.0738	0.00483191	3.80296e-5	0.0640491	0.00525714
chr19	15315839	15315939	7147239	0	-	0.59	(0.57,1]	chr19	721965	355	INTRON	INTRON	BRD4	ENSG00000141867.19	ENST00000679869.1:ENST00000360016.9:ENST00000594841.5:ENST00000597315.5:ENST00000601941.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	14	88	2	2.24269	2.323465	2.40424	9.05148e-4	1.19011e-4	0.0278396	0.00932678
chr16	16506716	16506816	6310929	0	+	0.41	(0.408,0.44]	chr16	604098	67	INTRON	INTRON	ENSG00000260126	ENSG00000260126.2	ENST00000567465.2	lncRNA	lncRNA	lncRNA	lncRNA	18	225	2	2.04345	2.3234500000000002	2.60345	9.94236e-4	1.21128e-4	0.0290397	0.00992813
chr6	147682732	147682832	2990823	0	+	0.27	[0,0.28]	chr6	280163	62	INTRON	INTRON	ENSG00000227681	ENSG00000227681.5	ENST00000427015.1:ENST00000432506.5:ENST00000442094.5	lncRNA	lncRNA	lncRNA	lncRNA	2	42	2	2.20927	2.3234399999999997	2.43761	0.0794763	0.0423864	0.19979	0.161744
chr10	72602941	72603041	4646700	0	-	0.52	(0.515,0.57]	chr10	427462	358	INTRON	INTRON	MICU1	ENSG00000107745.20	ENST00000361114.10:ENST00000642044.1:ENST00000635239.1:ENST00000604238.2:ENST00000603011.5:ENST00000604025.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	56	2	2.15051	2.323255	2.496	0.0238113	0.00225531	0.118889	0.0436331
chr2	235559230	235559330	1041989	0	+	0.39	(0.378,0.408]	chr2	111222	343	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1:ENST00000402604.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	74	2	1.21	2.323225	3.43645	0.0633399	0.00171162	0.197726	0.037419
chr7	64347192	64347291	3319776	0	+	0.313131	(0.28,0.32]	chr7	308636	99	INTRON	INTRON	ZNF736	ENSG00000234444.10	ENST00000355095.8:ENST00000423484.3	protein_coding	protein_coding	protein_coding	protein_coding	5	82	2	1.9021	2.32314	2.74418	0.0304779	0.00328589	0.130699	0.0527031
chr3	152332212	152332312	1535621	0	+	0.29	(0.28,0.32]	chr3	159996	299	INTRON	INTRON	MBNL1	ENSG00000152601.18	ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000495875.6:ENST00000324210.10:ENST00000493459.5:ENST00000459747.1:ENST00000460591.5:ENST00000545754.5:ENST00000357472.7:ENST00000324196.9:ENST00000498502.5:ENST00000463374.5:ENST00000485910.5:ENST00000465907.6:ENST00000492948.5:ENST00000485509.5:ENST00000464596.5	protein_coding	protein_coding	protein_coding	protein_coding	7	113	2	2.28491	2.323095	2.36128	0.0091216	0.0025684	0.0811564	0.0466761
chr11	62864747	62864847	4799414	0	+	0.55	(0.515,0.57]	chr11	444781	79	INTRON	INTRON	SLC3A2	ENSG00000168003.18	ENST00000680729.1:ENST00000680002.1:ENST00000681467.1:ENST00000377890.6:ENST00000538084.2:ENST00000681569.1:ENST00000680725.1:ENST00000377891.6:ENST00000377889.6:ENST00000681215.1:ENST00000535296.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	41	2	1.88259	2.3230649999999997	2.76354	0.0251849	0.0147344	0.133519	0.0983813
chr10	28552844	28552943	4414002	0	+	0.282828	(0.28,0.32]	chr10	407148	144	INTRON	INTRON	WAC	ENSG00000095787.24	ENST00000680735.1:ENST00000375664.8:ENST00000428935.6:ENST00000651598.1:ENST00000628285.3:ENST00000681112.1:ENST00000679570.1:ENST00000375646.5:ENST00000354911.9:ENST00000347934.8:ENST00000420266.6:ENST00000651885.1:ENST00000651441.1:ENST00000679398.1:ENST00000424454.5:ENST00000442148.6:ENST00000448193.5:ENST00000414108.6:ENST00000679428.1:ENST00000439676.5:ENST00000345541.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	118	2	2.17405	2.3230399999999998	2.47203	0.0114089	0.00226132	0.0886611	0.0437013
chr1	220130721	220130820	319154	0	+	0.393939	(0.378,0.408]	chr1	36543	35	INTRON	INTRON	IARS2	ENSG00000067704.10	ENST00000366922.3:ENST00000490891.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	41	2	2.11103	2.32303	2.53503	0.0319942	0.0266911	0.134419	0.13174
chr15	22502939	22503039	5974596	0	+	0.4	(0.378,0.408]	chr15	568077	69	INTRON	INTRON	HERC2P2	ENSG00000276550.5	ENST00000613386.4	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	3	41	2	2.11103	2.32303	2.53503	0.0319942	0.0266911	0.134419	0.13174
chr9	131634281	131634380	4362846	0	-	0.393939	(0.378,0.408]	chr9	401254	36	INTRON	INTRON	RAPGEF1	ENSG00000107263.19	ENST00000372195.5:ENST00000372189.7:ENST00000683357.1:ENST00000372190.7:ENST00000481260.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	41	2	2.11103	2.32303	2.53503	0.0319942	0.0266911	0.134419	0.13174
chrX	103677819	103677908	7856490	0	-	0.404494	(0.378,0.408]	chrX	801080	4	INTRON	INTRON	MORF4L2	ENSG00000123562.18	ENST00000360458.5:ENST00000441076.7:ENST00000433176.6:ENST00000451301.5:ENST00000434230.5:ENST00000418819.5:ENST00000442614.5:ENST00000492116.5:ENST00000422355.5:ENST00000474653.5:ENST00000498064.1:ENST00000467755.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	41	2	2.11103	2.32303	2.53503	0.0319942	0.0266911	0.134419	0.13174
chr3	52255517	52255615	1698740	0	-	0.418367	(0.408,0.44]	chr3	174679	12	UTR3	UTR3:EXON_MRNA	WDR82	ENSG00000164091.12	ENST00000296490.8:ENST00000487402.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	65	2	2.03431	2.323005	2.6117	0.0154896	0.00555224	0.108998	0.0648867
chr12	104552268	104552366	5211637	0	+	0.387755	(0.378,0.408]	chr12	493316	3	EXON_MRNA	EXON_MRNA:INTRON	CHST11:ENSG00000279176	ENSG00000171310.11:ENSG00000279176.1	ENST00000303694.6:ENST00000547956.1:ENST00000549260.5:ENST00000546689.1:ENST00000623545.1	protein_coding	protein_coding	protein_coding:TEC	protein_coding:TEC	3	41	2	2.04292	2.32294	2.60296	0.0326035	0.0267851	0.145164	0.123349
chr3	15846185	15846285	1624309	0	-	0.38	(0.378,0.408]	chr3	168034	315	INTRON	INTRON	ANKRD28	ENSG00000206560.12	ENST00000399451.6:ENST00000412318.5:ENST00000439830.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	41	2	2.04292	2.32294	2.60296	0.0326035	0.0267851	0.145164	0.123349
chr3	122458148	122458248	1801044	0	-	0.4	(0.378,0.408]	chr3	181000	3	SS3_PROX	SS3_PROX:INTRON	KPNA1	ENSG00000114030.13	ENST00000344337.11:ENST00000470904.5:ENST00000466923.5:ENST00000485027.5:ENST00000494339.5:ENST00000465882.5:ENST00000464940.1:ENST00000482287.5:ENST00000476916.5:ENST00000493510.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	41	2	2.04292	2.32294	2.60296	0.0326035	0.0267851	0.145164	0.123349
chr3	170163846	170163945	1861651	0	-	0.393939	(0.378,0.408]	chr3	186655	128	INTRON	INTRON	PHC3	ENSG00000173889.16	ENST00000495893.7:ENST00000494943.5:ENST00000467570.5:ENST00000484931.5:ENST00000479467.5:ENST00000466189.5:ENST00000475729.5:ENST00000474275.5:ENST00000472330.5:ENST00000465896.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	41	2	2.04292	2.32294	2.60296	0.0326035	0.0267851	0.145164	0.123349
chr8	26304434	26304533	3716225	0	+	0.393939	(0.378,0.408]	chr8	345368	55	INTRON	INTRON	PPP2R2A	ENSG00000221914.11	ENST00000380737.8:ENST00000520329.5:ENST00000518254.5:ENST00000524169.5:ENST00000518397.5:ENST00000522535.5:ENST00000665949.1:ENST00000522150.5:ENST00000523473.5:ENST00000521095.5:ENST00000660435.1:ENST00000523925.5:ENST00000524099.5:ENST00000315985.7:ENST00000519636.5:ENST00000522482.5:ENST00000521557.5:ENST00000519439.5:ENST00000521484.5:ENST00000523964.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	41	2	2.04292	2.32294	2.60296	0.0326035	0.0267851	0.145164	0.123349
chr5	37004325	37004421	2339724	0	+	0.302083	(0.28,0.32]	chr5	226036	6	INTRON	INTRON	NIPBL	ENSG00000164190.19	ENST00000282516.13:ENST00000448238.2:ENST00000652901.1	protein_coding	protein_coding	protein_coding	protein_coding	5	69	2	1.56118	2.3229	3.08462	0.0467152	0.0078976	0.1676	0.076155
chr5	138806937	138807037	2497845	0	+	0.32	(0.28,0.32]	chr5	238725	155	INTRON	INTRON	CTNNA1	ENSG00000044115.21	ENST00000517980.5:ENST00000522227.5:ENST00000523912.5:ENST00000627109.2:ENST00000521724.5:ENST00000302763.12:ENST00000518910.5:ENST00000519309.5:ENST00000519113.5:ENST00000520158.5:ENST00000518825.5:ENST00000518585.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	69	2	1.56118	2.3229	3.08462	0.0467152	0.0078976	0.1676	0.076155
chr5	177429976	177430075	2555885	0	+	0.353535	(0.35,0.378]	chr5	244175	27	INTRON	INTRON	GRK6	ENSG00000198055.11	ENST00000502598.5:ENST00000506296.5:ENST00000511244.5:ENST00000355472.10:ENST00000507633.5:ENST00000393576.7:ENST00000528793.5:ENST00000355958.9:ENST00000512684.1	protein_coding	protein_coding	protein_coding	protein_coding	6	82	2	1.96703	2.322885	2.67874	0.0135243	0.00373022	0.0949306	0.0561984
chr2	127856374	127856473	1226019	0	-	0.535354	(0.515,0.57]	chr2	130543	29	INTRON	INTRON	POLR2D	ENSG00000144231.11	ENST00000272645.9:ENST00000409955.1:ENST00000487079.1:ENST00000409698.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	41	2	1.67758	2.32286	2.96814	0.0471728	0.00756432	0.168737	0.0749063
chr3	185495234	185495315	1883988	0	-	0.567901	(0.515,0.57]	chr3	188407	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	TMEM41A	ENSG00000163900.11	ENST00000382227.7:ENST00000475480.5:ENST00000421852.6:ENST00000296254.3:ENST00000467061.1:ENST00000467520.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	41	2	1.67758	2.32286	2.96814	0.0471728	0.00756432	0.168737	0.0749063
chr8	94830508	94830606	3800191	0	+	0.55102	(0.515,0.57]	chr8	352351	11	INTRON	INTRON	INTS8	ENSG00000164941.14	ENST00000522171.5:ENST00000521860.5:ENST00000523731.6:ENST00000519457.5:ENST00000519053.5:ENST00000524333.5:ENST00000523321.5:ENST00000343161.8:ENST00000523206.5:ENST00000520526.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	41	2	1.67758	2.32286	2.96814	0.0471728	0.00756432	0.168737	0.0749063
chr22	26577190	26577290	7564939	0	-	0.43	(0.408,0.44]	chr22	774054	116	INTRON	INTRON	TPST2	ENSG00000128294.16	ENST00000338754.9:ENST00000403880.5:ENST00000442495.5:ENST00000440953.5:ENST00000450022.1	protein_coding	protein_coding	protein_coding	protein_coding	8	102	2	2.28817	2.3228	2.35743	0.00358507	0.00206746	0.0533855	0.0421756
chr2	151424841	151424939	893360	0	+	0.438776	(0.408,0.44]	chr2	98908	12	INTRON	INTRON	RIF1	ENSG00000080345.18	ENST00000453091.6:ENST00000428287.6:ENST00000444746.7:ENST00000243326.9:ENST00000414861.6:ENST00000430328.6	protein_coding	protein_coding	protein_coding	protein_coding	13	161	2	2.29543	2.322755	2.35008	0.0013047	4.39829e-4	0.0331539	0.0189326
chr3	183747716	183747816	1580796	0	+	0.36	(0.35,0.378]	chr3	163066	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	YEATS2	ENSG00000163872.16	ENST00000305135.10	protein_coding	protein_coding	protein_coding	protein_coding	5	70	2	2.32061	2.322625	2.32464	0.0159285	0.00545884	0.101453	0.0669938
chr3	14486881	14486980	1370262	0	+	0.353535	(0.35,0.378]	chr3	144406	20	UTR3	UTR3:EXON_MRNA	SLC6A6	ENSG00000131389.18	ENST00000613060.4:ENST00000618278.4:ENST00000649500.1:ENST00000622186.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	72	2	1.34988	2.32259	3.2953	0.0498069	0.0031465	0.17488	0.0500431
chr14	22830519	22830608	5656491	0	+	0.348315	(0.32,0.35]	chr14	539353	4	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MRPL52	ENSG00000172590.18	ENST00000557543.5:ENST00000355151.9:ENST00000397496.7:ENST00000556654.5:ENST00000553482.5:ENST00000556214.1:ENST00000555345.5:ENST00000432849.7:ENST00000553711.5:ENST00000556465.5:ENST00000397505.2:ENST00000557221.1:ENST00000311892.10:ENST00000556840.5:ENST00000461594.5:ENST00000555536.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	65	2	2.07985	2.3225249999999997	2.5652	0.0303092	0.00765724	0.143025	0.075364
chr10	74525626	74525726	4459520	0	+	0.32	(0.28,0.32]	chr10	411585	2	SS5_PROX	SS5_PROX:INTRON	ADK	ENSG00000156110.15	ENST00000672429.1:ENST00000539909.6:ENST00000286621.7:ENST00000673352.1:ENST00000673310.1:ENST00000672920.1:ENST00000672394.1:ENST00000372734.5:ENST00000673027.1:ENST00000541550.6:ENST00000672604.1:ENST00000467840.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	50	2	2.1895	2.322475	2.45545	0.0438092	0.0227063	0.14901	0.124921
chr12	79931995	79932095	5376504	0	-	0.29	(0.28,0.32]	chr12	512797	182	INTRON	INTRON	PPP1R12A	ENSG00000058272.19	ENST00000261207.9:ENST00000450142.7:ENST00000437004.6:ENST00000550107.5:ENST00000547330.5:ENST00000550510.5	protein_coding	protein_coding	protein_coding	protein_coding	3	50	2	2.1895	2.322475	2.45545	0.0438092	0.0227063	0.14901	0.124921
chr16	21963385	21963480	6319645	0	+	0.284211	(0.28,0.32]	chr16	604985	1	INTRON	INTRON	UQCRC2	ENSG00000140740.11	ENST00000268379.9:ENST00000561553.5:ENST00000563898.5:ENST00000565331.5:ENST00000567597.1:ENST00000563711.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	50	2	2.1895	2.322475	2.45545	0.0438092	0.0227063	0.14901	0.124921
chr19	11117896	11117996	7017119	0	+	0.46	(0.44,0.476]	chr19	697485	5	INTRON	INTRON	LDLR	ENSG00000130164.14	ENST00000557933.5:ENST00000558518.6:ENST00000545707.5:ENST00000535915.5:ENST00000455727.6:ENST00000558013.5:ENST00000252444.9:ENST00000559340.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	14	172	2	2.19056	2.322475	2.45439	0.00147358	2.40491e-4	0.0348596	0.0136674
chr2	144388274	144388374	1240455	0	-	0.29	(0.28,0.32]	chr2	131633	43	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	ZEB2	ENSG00000169554.23	ENST00000639389.1:ENST00000636471.1:ENST00000627532.3:ENST00000638128.1:ENST00000637304.1:ENST00000636179.1:ENST00000636820.1:ENST00000637045.1:ENST00000636413.1:ENST00000638007.1:ENST00000638087.1:ENST00000419938.5:ENST00000409487.7:ENST00000440875.6:ENST00000636732.2:ENST00000636026.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	50	2	2.1895	2.322475	2.45545	0.0438092	0.0227063	0.14901	0.124921
chr3	168079053	168079153	1854771	0	-	0.31	(0.28,0.32]	chr3	186419	303	INTRON	INTRON	GOLIM4	ENSG00000173905.9	ENST00000470487.6:ENST00000309027.4	protein_coding	protein_coding	protein_coding	protein_coding	3	50	2	2.1895	2.322475	2.45545	0.0438092	0.0227063	0.14901	0.124921
chr19	34217622	34217720	7051261	0	+	0.469388	(0.44,0.476]	chr19	703219	16	INTRON	INTRON	LSM14A	ENSG00000257103.9	ENST00000544216.8:ENST00000540746.6:ENST00000433627.9:ENST00000586157.2:ENST00000588582.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	65	2	2.14666	2.322445	2.49823	0.0116436	0.00718224	0.0889659	0.0756118
chr2	186491927	186492027	942869	0	+	0.38	(0.378,0.408]	chr2	103239	42	INTRON	INTRON	ZC3H15	ENSG00000065548.18	ENST00000421536.5:ENST00000337859.11:ENST00000437396.1:ENST00000477672.1:ENST00000481101.5:ENST00000468120.5:ENST00000496289.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	92	2	2.20712	2.322445	2.43777	0.00978751	0.00144299	0.0835427	0.034834
chr8	89719783	89719883	3984900	0	-	0.29	(0.28,0.32]	chr8	364988	25	EXON_LNCRNA	EXON_LNCRNA:INTRON	RIPK2-DT	ENSG00000251136.10	ENST00000688654.1:ENST00000690564.1:ENST00000661105.1:ENST00000685145.1:ENST00000519655.6:ENST00000656898.2:ENST00000685787.1:ENST00000693018.1:ENST00000691313.1:ENST00000691446.1:ENST00000524190.2:ENST00000691897.1:ENST00000685988.1:ENST00000691595.1:ENST00000688855.1:ENST00000504145.6:ENST00000685619.1:ENST00000621883.1:ENST00000653574.1	lncRNA	lncRNA	lncRNA	lncRNA	3	51	2	2.2609	2.322405	2.38391	0.0671429	0.0122525	0.183051	0.0969406
chr17	77418504	77418604	6680831	0	+	0.51	(0.476,0.515]	chr17	652538	130	INTRON	INTRON	SEPTIN9	ENSG00000184640.20	ENST00000591198.5:ENST00000427177.6:ENST00000431235.6:ENST00000449803.6:ENST00000329047.13:ENST00000588575.1:ENST00000590294.6:ENST00000588690.6:ENST00000423034.6:ENST00000590059.5:ENST00000427674.6:ENST00000592420.1:ENST00000585930.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	40	2	1.99197	2.322325	2.65268	0.039572	0.0201975	0.143072	0.121243
chr2	230766611	230766711	1030700	0	+	0.49	(0.476,0.515]	chr2	110012	61	INTRON	INTRON	CAB39	ENSG00000135932.12	ENST00000258418.10:ENST00000409788.7:ENST00000410084.7	protein_coding	protein_coding	protein_coding	protein_coding	3	40	2	1.99197	2.322325	2.65268	0.039572	0.0201975	0.143072	0.121243
chr3	177148805	177148905	1871959	0	-	0.52	(0.515,0.57]	chr3	187422	127	INTRON	INTRON	TBL1XR1	ENSG00000177565.18	ENST00000457928.7:ENST00000430069.5:ENST00000673974.1:ENST00000352800.10:ENST00000422442.6:ENST00000428970.5:ENST00000424913.5:ENST00000437738.5:ENST00000431421.5:ENST00000635794.1:ENST00000630796.2:ENST00000450267.5:ENST00000630833.2:ENST00000431674.5:ENST00000422066.5:ENST00000443315.5:ENST00000627825.2:ENST00000427349.5:ENST00000413084.5:ENST00000637137.1:ENST00000491623.2:ENST00000637544.1:ENST00000636187.1:ENST00000636912.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	66	2	2.06758	2.3222750000000003	2.57697	0.0140038	0.00153959	0.0959618	0.0362709
chr11	85663386	85663485	5013466	0	-	0.373737	(0.35,0.378]	chr11	472883	58	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CREBZF	ENSG00000137504.15	ENST00000682836.1:ENST00000527447.2:ENST00000490820.2:ENST00000528561.5:ENST00000260058.9:ENST00000531515.5:ENST00000534224.1:ENST00000525639.1:ENST00000527529.6:ENST00000528889.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	90	2	1.6756	2.322265	2.96893	0.0219737	0.00149997	0.123836	0.0351802
chr11	86007983	86008083	5014220	0	-	0.43	(0.408,0.44]	chr11	472975	4	SS3_PROX	SS3_PROX:INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000630913.2:ENST00000528398.5:ENST00000356360.9:ENST00000534412.5:ENST00000531771.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	120	2	1.37005	2.32224	3.27443	0.0210936	3.21517e-4	0.12275	0.0165575
chr5	131701978	131702077	2719784	0	-	0.363636	(0.35,0.378]	chr5	255678	26	INTRON	INTRON	FNIP1	ENSG00000217128.13	ENST00000510461.6:ENST00000307954.12:ENST00000307968.11:ENST00000511848.1	protein_coding	protein_coding	protein_coding	protein_coding	10	89	2	1.31041	2.3222199999999997	3.33403	0.034956	0.00272701	0.149246	0.0467523
chr22	19397791	19397891	7554081	0	-	0.33	(0.32,0.35]	chr22	772287	4	SS5_PROX	SS5_PROX:INTRON	HIRA:C22orf39	ENSG00000100084.14:ENSG00000242259.9	ENST00000263208.5:ENST00000340170.8:ENST00000509549.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	83	2	1.22414	2.3222	3.42026	0.0625148	0.00219805	0.195535	0.0417893
chr5	53996412	53996512	2617768	0	-	0.47	(0.44,0.476]	chr5	248835	844	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	107	2	1.89689	2.32211	2.74733	0.00630125	9.96884e-4	0.0722266	0.0288906
chr1	61206555	61206655	128638	0	+	0.39	(0.378,0.408]	chr1	14782	26	INTRON	INTRON	NFIA	ENSG00000162599.17	ENST00000371191.5:ENST00000664495.1:ENST00000476646.5:ENST00000407417.7:ENST00000479364.1:ENST00000371189.8:ENST00000670151.1:ENST00000664149.1:ENST00000662015.1:ENST00000403491.8:ENST00000371187.7:ENST00000485903.6:ENST00000371185.6:ENST00000371184.6:ENST00000663597.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	50	2	1.53052	2.32206	3.1136	0.0744544	0.00443339	0.192012	0.061054
chr6	15257258	15257358	2823058	0	+	0.32	(0.28,0.32]	chr6	265190	79	INTRON	INTRON	JARID2	ENSG00000008083.14	ENST00000341776.7:ENST00000397311.4	protein_coding	protein_coding	protein_coding	protein_coding	5	82	2	1.79721	2.32196	2.84671	0.0408024	0.00216662	0.1451	0.0434015
chr10	68028931	68029029	4637474	0	-	0.428571	(0.408,0.44]	chr10	426404	29	INTRON	INTRON	HERC4	ENSG00000148634.16	ENST00000277817.10:ENST00000373700.9:ENST00000412272.6:ENST00000395198.7:ENST00000473533.6:ENST00000427635.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	90	2	2.08486	2.3219399999999997	2.55902	0.0145898	7.64731e-4	0.0981689	0.0254338
chr1	39880973	39881071	428248	0	-	0.510204	(0.476,0.515]	chr1	52034	45	INTRON	INTRON	TRIT1	ENSG00000043514.17	ENST00000316891.10:ENST00000648678.1:ENST00000537440.5:ENST00000372818.5:ENST00000462797.5:ENST00000441669.6:ENST00000495175.6:ENST00000491865.5:ENST00000541099.5:ENST00000492612.6:ENST00000489945.5:ENST00000486825.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	56	2	1.63187	2.32192	3.01197	0.037661	0.00633162	0.14058	0.0722266
chr16	23983709	23983809	6325239	0	+	0.48	(0.476,0.515]	chr16	605705	195	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000498739.1:ENST00000647422.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	132	2	2.27858	2.32185	2.36512	0.00246559	6.66657e-4	0.0446195	0.0233952
chr17	1677794	1677868	6701475	0	-	0.378378	(0.378,0.408]	chr17	656058	1	SS3_PROX	SS3_PROX:INTRON	PRPF8	ENSG00000174231.17	ENST00000304992.11:ENST00000572621.5:ENST00000577001.1	protein_coding	protein_coding	protein_coding	protein_coding	6	77	2	1.52219	2.321845	3.1215	0.0531838	4.84777e-4	0.162538	0.0199443
chr22	21977178	21977276	7561971	0	-	0.397959	(0.378,0.408]	chr22	773552	6	INTRON	INTRON	TOP3B	ENSG00000100038.20	ENST00000357179.10:ENST00000457179.5:ENST00000444502.5:ENST00000398793.6:ENST00000424393.5:ENST00000437929.5:ENST00000430142.5:ENST00000456075.5:ENST00000449704.5:ENST00000437103.1:ENST00000434517.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	14	166	2	1.74655	2.32181	2.89707	0.00639982	1.23878e-4	0.0694534	0.00952291
chr7	130081302	130081402	3413702	0	+	0.39	(0.378,0.408]	chr7	319098	101	INTRON	INTRON	KLHDC10	ENSG00000128607.14	ENST00000335420.10:ENST00000463413.1:ENST00000468226.1	protein_coding	protein_coding	protein_coding	protein_coding	15	161	2	1.92943	2.321805	2.71418	0.00131967	0.00126468	0.0333932	0.0325134
chr10	60786378	60786477	4435851	0	+	0.262626	[0,0.28]	chr10	409184	7	EXON_MRNA	EXON_MRNA:INTRON	CDK1	ENSG00000170312.17	ENST00000519078.6:ENST00000475504.6:ENST00000316629.8:ENST00000395284.8:ENST00000448257.6:ENST00000373809.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	14	232	2	1.8892	2.321775	2.75435	0.00383681	0.00101683	0.0562562	0.029231300000000002
chr1	211803081	211803181	631131	0	-	0.38	(0.378,0.408]	chr1	74654	95	INTRON	INTRON	LPGAT1	ENSG00000123684.13	ENST00000366997.9:ENST00000366996.1	protein_coding	protein_coding	protein_coding	protein_coding	8	75	2	1.4946	2.32176	3.14892	0.024523	0.00499984	0.131869	0.0617433
chr7	151092442	151092542	3448411	0	+	0.57	(0.515,0.57]	chr7	322165	15	INTRON	INTRON	AGAP3	ENSG00000133612.19	ENST00000490097.5:ENST00000463381.5:ENST00000397238.7:ENST00000622464.4:ENST00000479901.5:ENST00000473312.5:ENST00000469901.5:ENST00000476375.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	47	2	1.44089	2.321645	3.2024	0.0617046	0.00322022	0.193423	0.0507087
chr16	11049016	11049116	6288613	0	+	0.5	(0.476,0.515]	chr16	602221	6	INTRON	INTRON	CLEC16A	ENSG00000038532.16	ENST00000409790.6:ENST00000409552.4:ENST00000465491.5:ENST00000646363.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	41	2	2.16377	2.32163	2.47949	0.0326974	0.0243026	0.145164	0.12011
chr6	34382064	34382164	3084668	0	-	0.35	(0.32,0.35]	chr6	288633	397	INTRON	INTRON	NUDT3:RPS10-NUDT3	ENSG00000272325.2:ENSG00000270800.3	ENST00000607016.2:ENST00000639725.1:ENST00000639877.1:ENST00000605528.2	protein_coding	protein_coding	protein_coding	protein_coding	6	86	2	2.18299	2.32163	2.46027	0.0108973	0.00505063	0.0873034	0.0646039
chr9	131137494	131137593	4215745	0	+	0.292929	(0.28,0.32]	chr9	386544	11	INTRON	INTRON	NUP214	ENSG00000126883.19	ENST00000695497.1:ENST00000695498.1:ENST00000695496.1:ENST00000695495.1:ENST00000695494.1:ENST00000695493.1:ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000525561.2:ENST00000651022.1:ENST00000695499.1:ENST00000530843.1:ENST00000530863.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	29	453	2	2.2031	2.321585	2.44007	7.25584e-4	6.83387e-5	0.0247646	0.00684369
chr20	35706619	35706719	7336176	0	-	0.35	(0.32,0.35]	chr20	747401	1	SS5_PROX	SS5_PROX:INTRON	RBM39	ENSG00000131051.24	ENST00000253363.11:ENST00000639702.1:ENST00000656873.1:ENST00000463004.5:ENST00000361162.10:ENST00000461283.5:ENST00000403542.6:ENST00000338163.10:ENST00000528062.7:ENST00000429968.5:ENST00000444878.5:ENST00000665058.1:ENST00000476806.5:ENST00000495293.5:ENST00000492779.5:ENST00000482563.1:ENST00000496183.5:ENST00000465158.5:ENST00000448303.5:ENST00000470563.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	133	2	2.07731	2.321565	2.56582	0.00975384	4.56098e-4	0.0833791	0.0192963
chr3	195964195	195964287	1896698	0	-	0.5	(0.476,0.515]	chr3	189800	4	INTRON	INTRON	SDHAP1	ENSG00000185485.14	ENST00000427149.5:ENST00000427841.5:ENST00000354559.9:ENST00000440850.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	10	116	2	1.642	2.32153	3.00106	0.0138314	2.78737e-4	0.10247	0.0153269
chr12	121316880	121316979	5436809	0	-	0.343434	(0.32,0.35]	chr12	519847	65	INTRON	INTRON	ANAPC5	ENSG00000089053.13	ENST00000261819.8:ENST00000535641.5:ENST00000541887.5:ENST00000534976.5:ENST00000441917.6:ENST00000539079.5:ENST00000544314.5:ENST00000535482.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	104	2	1.77469	2.3215250000000003	2.86836	0.0115283	0.00250845	0.0960498	0.0446195
chr11	86024138	86024235	5014390	0	-	0.329897	(0.32,0.35]	chr11	473008	2	INTRON	INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000630913.2:ENST00000528398.5:ENST00000356360.9:ENST00000534412.5:ENST00000531558.1:ENST00000531930.5:ENST00000532041.5:ENST00000525162.5:ENST00000528256.1:ENST00000528411.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	71	2	1.65179	2.32152	2.99125	0.0245569	0.00958447	0.131869	0.0820838
chr1	32664731	32664831	65967	0	+	0.51	(0.476,0.515]	chr1	8429	20	INTRON	INTRON	RBBP4	ENSG00000162521.19	ENST00000414241.7:ENST00000527118.5:ENST00000373493.10:ENST00000401893.7:ENST00000524393.5:ENST00000492348.6:ENST00000526193.5:ENST00000373485.5:ENST00000477563.6:ENST00000458695.6:ENST00000445722.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	89	2	1.56702	2.321515	3.07601	0.0257979	5.95211e-4	0.121115	0.0221865
chr16	22284687	22284786	6321481	0	+	0.525253	(0.515,0.57]	chr16	605178	8	UTR3	UTR3:EXON_MRNA	EEF2K	ENSG00000103319.12	ENST00000263026.10	protein_coding	protein_coding	protein_coding	protein_coding	6	52	2	1.49552	2.32141	3.1473	0.0385038	0.00397184	0.159277	0.0549214
chr10	73023781	73023881	4647104	0	-	0.36	(0.35,0.378]	chr10	427494	65	INTRON	INTRON	P4HA1	ENSG00000122884.13	ENST00000394890.7:ENST00000307116.6:ENST00000373008.6:ENST00000440381.5:ENST00000263556.3	protein_coding	protein_coding	protein_coding	protein_coding	2	32	2	2.24535	2.3214050000000004	2.39746	0.0647516	0.041314	0.179192	0.161534
chr19	58488828	58488927	7218182	0	-	0.363636	(0.35,0.378]	chr19	733342	48	INTRON	INTRON	SLC27A5	ENSG00000083807.10	ENST00000595851.5	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	2	32	2	2.24535	2.3214050000000004	2.39746	0.0647516	0.041314	0.179192	0.161534
chr21	5233823	5233922	7424786	0	-	0.353535	(0.35,0.378]	chr21	757417	5	INTRON	INTRON	ENSG00000279669	ENSG00000279669.1	ENST00000623753.1	lncRNA	lncRNA	lncRNA	lncRNA	2	32	2	2.24535	2.3214050000000004	2.39746	0.0647516	0.041314	0.179192	0.161534
chr22	47695866	47695965	7540004	0	+	0.353535	(0.35,0.378]	chr22	770705	45	INTRON	INTRON	ENSG00000224271	ENSG00000224271.7	ENST00000664761.1:ENST00000651071.1:ENST00000650683.1:ENST00000651536.1:ENST00000652499.1:ENST00000652656.1:ENST00000652072.1:ENST00000651445.1:ENST00000423737.5:ENST00000650834.1:ENST00000650660.1:ENST00000651056.1:ENST00000652611.1:ENST00000652399.1:ENST00000652123.1:ENST00000651311.1:ENST00000651458.1:ENST00000652505.1:ENST00000652702.2:ENST00000652334.1:ENST00000652030.2:ENST00000651403.1:ENST00000652228.1:ENST00000651124.1:ENST00000650972.1:ENST00000651985.1:ENST00000651754.1:ENST00000651637.1:ENST00000650924.1:ENST00000651003.1:ENST00000652168.1:ENST00000651948.2:ENST00000651293.1:ENST00000651939.1:ENST00000650787.1:ENST00000651517.1:ENST00000651662.1:ENST00000652690.1:ENST00000651638.1:ENST00000670853.1:ENST00000652750.1:ENST00000652080.1:ENST00000651294.1:ENST00000652164.1:ENST00000651538.1:ENST00000650775.1:ENST00000651983.1:ENST00000651033.1:ENST00000651584.1	lncRNA	lncRNA	lncRNA	lncRNA	2	32	2	2.24535	2.3214050000000004	2.39746	0.0647516	0.041314	0.179192	0.161534
chr7	5409987	5410086	3471945	0	-	0.373737	(0.35,0.378]	chr7	324678	27	INTRON	INTRON	TNRC18	ENSG00000182095.15	ENST00000399537.8:ENST00000430969.6:ENST00000399434.2	protein_coding	protein_coding	protein_coding	protein_coding	2	32	2	2.24535	2.3214050000000004	2.39746	0.0647516	0.041314	0.179192	0.161534
chr7	117085549	117085649	3387314	0	+	0.37	(0.35,0.378]	chr7	317155	85	INTRON	INTRON	ST7:ST7-OT4	ENSG00000004866.22:ENSG00000214188.9	ENST00000393446.6:ENST00000265437.9:ENST00000393451.7:ENST00000438863.5:ENST00000393449.5:ENST00000443979.5:ENST00000323984.8:ENST00000417919.5:ENST00000446490.5:ENST00000471110.5:ENST00000422922.5:ENST00000432298.5:ENST00000449366.5:ENST00000487459.5:ENST00000393443.5:ENST00000467538.5:ENST00000434836.5:ENST00000465133.5:ENST00000477742.5:ENST00000462544.1:ENST00000393444.7:ENST00000393447.8:ENST00000420755.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:nonsense_mediated_decay:lncRNA:processed_transcript	2	32	2	2.24535	2.3214050000000004	2.39746	0.0647516	0.041314	0.179192	0.161534
chr7	128482826	128482926	3407133	0	+	0.37	(0.35,0.378]	chr7	318289	4	SS3_PROX	SS3_PROX:INTRON	ENSG00000273184:METTL2B	ENSG00000273184.1:ENSG00000165055.16	ENST00000462662.1:ENST00000482555.5:ENST00000262432.13:ENST00000497665.5:ENST00000480046.5:ENST00000473488.1:ENST00000419443.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA:processed_transcript	2	32	2	2.24535	2.3214050000000004	2.39746	0.0647516	0.041314	0.179192	0.161534
chr10	100250931	100251030	4678828	0	-	0.272727	[0,0.28]	chr10	431693	2	INTRON	INTRON	CWF19L1	ENSG00000095485.18	ENST00000468709.5:ENST00000354105.10:ENST00000482452.5:ENST00000478047.1:ENST00000466955.5:ENST00000496796.5:ENST00000473842.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	57	2	1.95356	2.32137	2.68918	0.0463152	0.0275571	0.166231	0.123904
chr12	93382926	93383026	5188990	0	+	0.53	(0.515,0.57]	chr12	490788	15	INTRON	INTRON	NUDT4	ENSG00000173598.14	ENST00000337179.9:ENST00000415493.7:ENST00000549992.5:ENST00000550056.5:ENST00000547014.5:ENST00000548662.5:ENST00000546925.1	protein_coding	protein_coding	protein_coding	protein_coding	5	49	2	2.03368	2.321335	2.60899	0.0232669	0.00803127	0.118148	0.0803474
chr1	23784976	23785075	44846	0	+	0.333333	(0.32,0.35]	chr1	5454	47	INTRON	INTRON	PITHD1	ENSG00000057757.10	ENST00000246151.9:ENST00000415372.1	protein_coding	protein_coding	protein_coding	protein_coding	5	76	2	1.64769	2.32132	2.99495	0.0578603	0.00102621	0.167723	0.0294094
chr15	72547246	72547345	6059892	0	+	0.535354	(0.515,0.57]	chr15	576870	19	INTRON	INTRON	ARIH1	ENSG00000166233.15	ENST00000379887.9:ENST00000570085.5:ENST00000564062.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	34	2	2.03361	2.3213	2.60899	0.0325854	0.0232669	0.145164	0.118148
chr16	89334676	89334776	6542021	0	-	0.56	(0.515,0.57]	chr16	634207	58	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000647238.1:ENST00000566858.5:ENST00000644045.1:ENST00000643147.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	34	2	2.03361	2.3213	2.60899	0.0325854	0.0232669	0.145164	0.118148
chr17	51081402	51081502	6796623	0	-	0.53	(0.515,0.57]	chr17	671024	13	INTRON	INTRON	SPAG9	ENSG00000008294.22	ENST00000262013.12:ENST00000505279.5:ENST00000357122.8	protein_coding	protein_coding	protein_coding	protein_coding	3	34	2	2.03361	2.3213	2.60899	0.0325854	0.0232669	0.145164	0.118148
chr2	99380216	99380312	835253	0	+	0.541667	(0.515,0.57]	chr2	93722	4	INTRON	INTRON	EIF5B	ENSG00000158417.11	ENST00000617677.1:ENST00000289371.11	protein_coding	protein_coding	protein_coding	protein_coding	3	34	2	2.03361	2.3213	2.60899	0.0325854	0.0232669	0.145164	0.118148
chr1	193215764	193215864	285563	0	+	0.58	(0.57,1]	chr1	32840	29	INTRON	INTRON	CDC73	ENSG00000134371.14	ENST00000649895.1:ENST00000643006.1:ENST00000367435.5:ENST00000650197.1:ENST00000648071.1:ENST00000635846.1:ENST00000649613.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	47	2	1.87901	2.321285	2.76356	0.0152867	5.18582e-4	0.108569	0.0209322
chr1	219191086	219191185	318550	0	+	0.343434	(0.32,0.35]	chr1	36451	113	INTRON	INTRON	LYPLAL1	ENSG00000143353.12	ENST00000460522.5:ENST00000366927.3:ENST00000496776.5:ENST00000366928.10:ENST00000477938.5:ENST00000463964.5:ENST00000483635.5:ENST00000474379.5:ENST00000469590.5:ENST00000478794.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	46	2	2.19668	2.3212400000000004	2.4458	0.0425977	0.021398	0.148082	0.123719
chrX	151967686	151967785	7908562	0	-	0.333333	(0.32,0.35]	chrX	804799	47	INTRON	INTRON	GABRE	ENSG00000102287.19	ENST00000370328.4:ENST00000441219.5:ENST00000474932.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	46	2	2.19668	2.3212400000000004	2.4458	0.0425977	0.021398	0.148082	0.123719
chr5	91382212	91382312	2674983	0	-	0.34	(0.32,0.35]	chr5	253125	13	INTRON	INTRON	ARRDC3	ENSG00000113369.9	ENST00000265138.4:ENST00000507075.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	94	2	1.15626	2.32123	3.4862	0.0599131	0.001711	0.190341	0.037419
chr5	134169773	134169869	2726283	0	-	0.489583	(0.476,0.515]	chr5	256494	22	INTRON	INTRON	SKP1	ENSG00000113558.19	ENST00000353411.11:ENST00000522552.5:ENST00000521216.5:ENST00000517625.5:ENST00000523966.5:ENST00000522855.5:ENST00000328392.10:ENST00000519054.5:ENST00000519321.5:ENST00000520417.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	40	2	2.32001	2.321155	2.3223	0.0519312	0.0136217	0.159306	0.101682
chr11	3011794	3011894	4892120	0	-	0.57	(0.515,0.57]	chr11	458414	2	SS5_PROX	SS5_PROX:INTRON	CARS1	ENSG00000110619.18	ENST00000397111.9:ENST00000531387.5:ENST00000380525.9:ENST00000278224.13:ENST00000529772.5:ENST00000526890.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	42	2	2.11724	2.3211399999999998	2.52504	0.029342	0.0110335	0.128055	0.0927187
chr6	99552790	99552889	3167192	0	-	0.515152	(0.476,0.515]	chr6	295520	5	INTRON	INTRON	CCNC	ENSG00000112237.13	ENST00000520429.6:ENST00000326298.8:ENST00000369220.8:ENST00000520371.5:ENST00000523961.5:ENST00000523799.5:ENST00000486428.6:ENST00000523985.5:ENST00000518714.5:ENST00000484049.6:ENST00000524049.5:ENST00000627680.2:ENST00000521017.5:ENST00000523639.5:ENST00000369217.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	77	2	2.29359	2.32113	2.34867	0.00584957	0.00539703	0.0689807	0.0644048
chr4	174296765	174296865	2082708	0	+	0.33	(0.32,0.35]	chr4	205805	108	INTRON	INTRON	CEP44	ENSG00000164118.13	ENST00000505124.5:ENST00000457424.6:ENST00000396791.7:ENST00000503780.6:ENST00000514712.5:ENST00000515299.5:ENST00000503053.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	58	2	2.2643	2.32112	2.37794	0.0498601	0.00712852	0.156383	0.0756118
chr1	30998401	30998500	412217	0	-	0.414141	(0.408,0.44]	chr1	49713	28	INTRON	INTRON	PUM1	ENSG00000134644.16	ENST00000426105.7:ENST00000373747.7:ENST00000257075.9:ENST00000424085.6:ENST00000525843.5:ENST00000440538.6:ENST00000373741.8:ENST00000373742.6:ENST00000526215.5:ENST00000525948.5:ENST00000480602.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	89	2	2.15894	2.3211	2.48326	0.00504142	0.00324772	0.0646039	0.0508595
chr1	154584610	154584707	558926	0	-	0.391753	(0.378,0.408]	chr1	66410	31	UTR3	UTR3:EXON_MRNA	ADAR	ENSG00000160710.18	ENST00000681056.1:ENST00000680270.1:ENST00000679375.1:ENST00000679899.1:ENST00000681901.1:ENST00000648714.2:ENST00000681235.1:ENST00000647682.2:ENST00000368474.9:ENST00000680305.1:ENST00000368471.8:ENST00000648231.2:ENST00000649022.2:ENST00000681786.1:ENST00000679465.1:ENST00000679805.1:ENST00000649408.2:ENST00000681429.1:ENST00000492630.2:ENST00000649042.1:ENST00000649724.1:ENST00000648311.1:ENST00000649749.1:ENST00000649021.1:ENST00000529168.2:ENST00000681683.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	122	2	2.21619	2.321065	2.42594	0.00428028	9.55992e-4	0.0574861	0.0284395
chr1	92832451	92832551	162422	0	+	0.63	(0.57,1]	chr1	17513	2	SS5_PROX	SS5_PROX:INTRON	RPL5	ENSG00000122406.14	ENST00000645300.1:ENST00000370321.8:ENST00000645119.1:ENST00000470843.5:ENST00000646852.1:ENST00000315741.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	48	2	1.90721	2.320975	2.73474	0.00529133	0.00241874	0.0636343	0.0454275
chr7	102365454	102365554	3371088	0	+	0.35	(0.32,0.35]	chr7	315425	1	SS3_PROX	SS3_PROX:INTRON	PRKRIP1:ENSG00000239969	ENSG00000128563.13:ENSG00000239969.6	ENST00000477886.5:ENST00000469763.5:ENST00000482549.5:ENST00000496391.5:ENST00000484974.5:ENST00000492837.1	protein_coding	protein_coding	protein_coding:transcribed_unprocessed_pseudogene	protein_coding:processed_transcript	3	46	2	1.95271	2.32096	2.68921	0.0431213	0.0230336	0.162255	0.118056
chr12	54296387	54296484	5330949	0	-	0.309278	(0.28,0.32]	chr12	508655	7	INTRON	INTRON	NFE2	ENSG00000123405.14	ENST00000435572.7:ENST00000553070.5:ENST00000553198.1	protein_coding	protein_coding	protein_coding	protein_coding	2	37	2	2.2609	2.3209549999999997	2.38101	0.0671429	0.0456017	0.183051	0.164236
chr15	95164476	95164575	6108292	0	+	0.30303	(0.28,0.32]	chr15	581758	37	INTRON	INTRON	ENSG00000277654	ENSG00000277654.6	ENST00000612877.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	2	37	2	2.2609	2.3209549999999997	2.38101	0.0671429	0.0456017	0.183051	0.164236
chr5	36895685	36895785	2338619	0	+	0.31	(0.28,0.32]	chr5	225949	93	INTRON	INTRON	NIPBL	ENSG00000164190.19	ENST00000282516.13:ENST00000448238.2:ENST00000652901.1	protein_coding	protein_coding	protein_coding	protein_coding	2	37	2	2.2609	2.3209549999999997	2.38101	0.0671429	0.0456017	0.183051	0.164236
chr17	27307865	27307963	6580678	0	+	0.438776	(0.408,0.44]	chr17	639629	2	UTR3	UTR3:EXON_MRNA:INTRON	WSB1	ENSG00000109046.15	ENST00000467843.6:ENST00000579733.5:ENST00000583193.5:ENST00000262394.7:ENST00000427287.6:ENST00000348811.6:ENST00000584114.1:ENST00000487603.5:ENST00000583096.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	123	2	2.27926	2.32089	2.36252	0.00260554	9.96556e-4	0.0455058	0.0290732
chr11	5332184	5332284	4896534	0	-	0.41	(0.408,0.44]	chr11	459162	39	INTRON	INTRON	HBG2:ENSG00000239920:HBE1:OR51B5	ENSG00000196565.15:ENSG00000239920.2:ENSG00000213931.7:ENSG00000167355.8	ENST00000380252.6:ENST00000380259.7:ENST00000643199.1:ENST00000292896.3:ENST00000380237.5:ENST00000420726.6:ENST00000420465.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	56	2	1.4947	2.32088	3.14706	0.0566065	0.00382411	0.167352	0.0562562
chr22	16804374	16804473	7546444	0	-	0.363636	(0.35,0.378]	chr22	771321	40	INTRON	INTRON	XKR3	ENSG00000172967.8	ENST00000331428.5:ENST00000684488.1	protein_coding	protein_coding	protein_coding	protein_coding	3	43	2	2.17079	2.32072	2.47065	0.0386172	0.0225978	0.142656	0.124921
chr19	3412374	3412473	7000085	0	+	0.424242	(0.408,0.44]	chr19	694177	8	INTRON	INTRON	NFIC	ENSG00000141905.19	ENST00000641145.1:ENST00000589123.5:ENST00000395111.7:ENST00000586919.5:ENST00000341919.7:ENST00000443272.3:ENST00000590282.5:ENST00000588839.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	41	2	2.05947	2.32063	2.58179	0.0333232	0.024638	0.134145	0.131869
chr3	33710915	33711015	1653938	0	-	0.41	(0.408,0.44]	chr3	169693	136	INTRON	INTRON	CLASP2	ENSG00000163539.18	ENST00000399362.8:ENST00000682230.1:ENST00000468888.6:ENST00000359576.9:ENST00000467956.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	41	2	2.05947	2.32063	2.58179	0.0333232	0.024638	0.134145	0.131869
chr4	55404834	55404934	1960679	0	+	0.35	(0.32,0.35]	chr4	196553	11	INTRON	INTRON	TMEM165	ENSG00000134851.13	ENST00000381334.10:ENST00000506198.5:ENST00000508404.5:ENST00000511710.1:ENST00000502797.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	15	122	2	1.18749	2.32055	3.45361	0.0356052	0.00193809	0.151609	0.0399255
chr17	67072518	67072617	6824059	0	-	0.474747	(0.44,0.476]	chr17	674357	22	UTR3	UTR3:EXON_MRNA	HELZ	ENSG00000198265.12	ENST00000358691.10	protein_coding	protein_coding	protein_coding	protein_coding	6	73	2	2.08453	2.32051	2.55649	0.00689	0.00670547	0.0750118	0.0707084
chr16	9104065	9104164	6285496	0	+	0.414141	(0.408,0.44]	chr16	601929	9	UTR3	UTR3:EXON_MRNA:INTRON	C16orf72	ENSG00000182831.12	ENST00000327827.12:ENST00000574285.2	protein_coding	protein_coding	protein_coding	protein_coding	31	375	2	1.7198	2.3205	2.9212	0.00300524	1.33702e-6	0.0493883	6.80373e-4
chr17	82258156	82258255	6852674	0	-	0.373737	(0.35,0.378]	chr17	679151	22	INTRON	INTRON	CSNK1D	ENSG00000141551.15	ENST00000398519.9:ENST00000314028.11:ENST00000581241.5:ENST00000392334.6:ENST00000403276.7:ENST00000582844.5:ENST00000580446.1:ENST00000581660.5:ENST00000578194.5:ENST00000579316.5:ENST00000584472.5:ENST00000580061.5:ENST00000585026.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	43	2	1.9755	2.320485	2.66547	0.0398617	0.0233639	0.161534	0.118323
chr9	136481951	136482048	4375030	0	-	0.350515	(0.35,0.378]	chr9	403099	28	INTRON	INTRON	SEC16A	ENSG00000148396.19	ENST00000290037.10:ENST00000684901.1:ENST00000690691.1	protein_coding	protein_coding	protein_coding	protein_coding	3	43	2	1.9755	2.320485	2.66547	0.0398617	0.0233639	0.161534	0.118323
chr2	241302339	241302439	1348436	0	-	0.43	(0.408,0.44]	chr2	141649	3	SS5_PROX	SS5_PROX:INTRON	HDLBP	ENSG00000115677.18	ENST00000310931.10:ENST00000391976.6:ENST00000428482.5:ENST00000430918.5:ENST00000441124.5:ENST00000413241.5:ENST00000423693.5:ENST00000425989.5:ENST00000420451.5:ENST00000417540.5:ENST00000462130.1:ENST00000496569.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	55	2	1.81572	2.320415	2.82511	0.0626779	0.00189528	0.175915	0.0402736
chr5	154869570	154869668	2527789	0	+	0.418367	(0.408,0.44]	chr5	241753	14	INTRON	INTRON	CNOT8	ENSG00000155508.14	ENST00000523698.5:ENST00000517876.5:ENST00000520472.5:ENST00000519211.5:ENST00000522458.5:ENST00000403027.6:ENST00000521450.5:ENST00000519903.5:ENST00000517568.5:ENST00000524105.5:ENST00000285896.11:ENST00000521583.5:ENST00000520671.5:ENST00000519404.5:ENST00000521729.5:ENST00000518775.5:ENST00000522644.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	55	2	1.81572	2.320415	2.82511	0.0626779	0.00189528	0.175915	0.0402736
chr19	57862528	57862628	7106163	0	+	0.44	(0.408,0.44]	chr19	713245	25	UTR3	UTR3:EXON_MRNA	ZNF587	ENSG00000198466.12	ENST00000339656.8:ENST00000419854.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	108	2	1.86926	2.3204	2.77154	0.00709955	9.14134e-4	0.0755905	0.0278396
chr22	50207116	50207213	7544075	0	+	0.505155	(0.476,0.515]	chr22	770979	2	INTRON	INTRON	SELENOO	ENSG00000073169.15	ENST00000380903.7:ENST00000492092.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	65	2	1.69382	2.32037	2.94692	0.0219532	0.00794331	0.115201	0.0797304
chr2	9544457	9544556	1064378	0	-	0.59596	(0.57,1]	chr2	113556	3	INTRON	INTRON	ADAM17	ENSG00000151694.14	ENST00000310823.8:ENST00000648548.1:ENST00000649227.1:ENST00000648857.1:ENST00000647979.1:ENST00000647610.1:ENST00000650116.1:ENST00000647622.1:ENST00000649972.1:ENST00000650241.1:ENST00000618923.2:ENST00000478059.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	47	2	1.72406	2.32036	2.91666	0.0261443	2.13552e-4	0.122221	0.0128246
chr5	43036741	43036841	2613849	0	-	0.49	(0.476,0.515]	chr5	248459	181	INTRON	INTRON	ENSG00000177738	ENSG00000177738.5	ENST00000503152.2:ENST00000665537.1	lncRNA	lncRNA	lncRNA	lncRNA	8	102	2	2.17892	2.3203500000000004	2.46178	0.0046578	0.00159317	0.0629753	0.0364566
chr5	73048068	73048167	2389094	0	+	0.393939	(0.378,0.408]	chr5	230574	64	INTRON	INTRON	FCHO2	ENSG00000157107.14	ENST00000430046.7:ENST00000512348.5	protein_coding	protein_coding	protein_coding	protein_coding	5	67	2	2.21238	2.320325	2.42827	0.0218124	0.00336942	0.11491	0.0532965
chr17	42507813	42507899	6611804	0	+	0.546512	(0.515,0.57]	chr17	644177	2	SS5_PROX	SS5_PROX:INTRON	ATP6V0A1	ENSG00000033627.17	ENST00000393829.6:ENST00000343619.9:ENST00000537728.5:ENST00000264649.10:ENST00000585525.5:ENST00000544137.5:ENST00000587510.5:ENST00000586201.5:ENST00000588138.1:ENST00000585828.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	55	2	2.06758	2.32028	2.57298	0.0140038	0.00506495	0.0959618	0.0646039
chr3	11816679	11816779	1615778	0	-	0.6	(0.57,1]	chr3	166773	2	SS5_PROX	SS5_PROX:INTRON	TAMM41	ENSG00000144559.11	ENST00000273037.9:ENST00000455809.6:ENST00000457498.5:ENST00000414736.1:ENST00000444133.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	58	2	2.10552	2.32027	2.53502	0.00330145	6.60462e-4	0.0527031	0.023462
chr1	40196064	40196164	80314	0	+	0.5	(0.476,0.515]	chr1	10424	3	SS5_PROX	SS5_PROX:INTRON	RLF	ENSG00000117000.9	ENST00000372771.5	protein_coding	protein_coding	protein_coding	protein_coding	16	193	2	2.31282	2.3201349999999996	2.32745	7.70967e-4	2.54261e-4	0.0255385	0.0142045
chr1	153814814	153814909	556672	0	-	0.526316	(0.515,0.57]	chr1	65944	10	INTRON	INTRON	GATAD2B	ENSG00000143614.10	ENST00000368655.5:ENST00000634544.1:ENST00000634408.1:ENST00000634564.1	protein_coding	protein_coding	protein_coding	protein_coding	6	68	2	1.811	2.32008	2.82916	0.0325989	4.25151e-4	0.133687	0.018441
chr1	2242820	2242920	2311	0	+	0.39	(0.378,0.408]	chr1	553	98	INTRON	INTRON	SKI	ENSG00000157933.10	ENST00000378536.5:ENST00000508416.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	67	2	2.04622	2.32001	2.5938	0.0149927	0.00614976	0.107704	0.0676501
chr2	15560007	15560104	1073155	0	-	0.402062	(0.378,0.408]	chr2	114487	10	INTRON	INTRON	NBAS	ENSG00000151779.13	ENST00000281513.10	protein_coding	protein_coding	protein_coding	protein_coding	5	67	2	1.73164	2.319995	2.90835	0.0441773	0.00133715	0.149888	0.0335955
chr10	35567176	35567274	4426825	0	+	0.387755	(0.378,0.408]	chr10	407964	6	INTRON	INTRON	CCNY	ENSG00000108100.18	ENST00000374706.5:ENST00000374704.8:ENST00000265375.13:ENST00000339497.7	protein_coding	protein_coding	protein_coding	protein_coding	3	41	2	2.17608	2.319905	2.46373	0.0382831	0.0218783	0.141795	0.123836
chr16	81000648	81000747	6530635	0	-	0.393939	(0.378,0.408]	chr16	632671	18	INTRON	INTRON	CMC2	ENSG00000103121.9	ENST00000219400.8:ENST00000486645.5:ENST00000570195.5:ENST00000569187.5:ENST00000570086.5:ENST00000565650.5:ENST00000567593.5:ENST00000568228.5:ENST00000565914.5:ENST00000565108.5:ENST00000565925.5:ENST00000564174.5:ENST00000565613.5:ENST00000562713.3:ENST00000562828.5:ENST00000630396.1:ENST00000565514.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	41	2	2.17608	2.319905	2.46373	0.0382831	0.0218783	0.141795	0.123836
chr3	25651955	25652055	1642040	0	-	0.4	(0.378,0.408]	chr3	168598	61	INTRON	INTRON	TOP2B	ENSG00000077097.16	ENST00000264331.9:ENST00000435706.6:ENST00000424225.1	protein_coding	protein_coding	protein_coding	protein_coding	3	41	2	2.17608	2.319905	2.46373	0.0382831	0.0218783	0.141795	0.123836
chr3	180975112	180975212	1569253	0	+	0.38	(0.378,0.408]	chr3	162450	4	SS3_PROX	SS3_PROX:INTRON	FXR1	ENSG00000114416.18	ENST00000305586.11:ENST00000475315.5:ENST00000357559.9:ENST00000468861.5:ENST00000491062.5:ENST00000445140.6:ENST00000472339.5:ENST00000480918.5:ENST00000482125.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	41	2	2.17608	2.319905	2.46373	0.0382831	0.0218783	0.141795	0.123836
chr7	107236528	107236607	3609735	0	-	0.379747	(0.378,0.408]	chr7	336622	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	COG5	ENSG00000164597.15	ENST00000297135.9:ENST00000347053.8:ENST00000393603.7:ENST00000464542.5:ENST00000468350.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	41	2	2.17608	2.319905	2.46373	0.0382831	0.0218783	0.141795	0.123836
chr8	43065208	43065306	3745939	0	+	0.397959	(0.378,0.408]	chr8	348528	6	INTRON	INTRON	FNTA	ENSG00000168522.13	ENST00000533559.5:ENST00000526755.5:ENST00000302279.8:ENST00000527153.5:ENST00000533383.5:ENST00000533998.5:ENST00000524546.5:ENST00000531266.5:ENST00000533368.1:ENST00000525699.5:ENST00000529687.5:ENST00000533336.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	41	2	2.17608	2.319905	2.46373	0.0382831	0.0218783	0.141795	0.123836
chr1	55053091	55053191	108616	0	+	0.42	(0.408,0.44]	chr1	14190	3	SS5_PROX	SS5_PROX:INTRON	PCSK9	ENSG00000169174.11	ENST00000302118.5:ENST00000673903.1:ENST00000490692.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	55	2	2.14732	2.31975	2.49218	0.0237354	0.00855168	0.129075	0.0780217
chr18	2719928	2720028	6865530	0	+	0.42	(0.408,0.44]	chr18	680043	11	INTRON	INTRON	SMCHD1	ENSG00000101596.17	ENST00000320876.11:ENST00000688342.1:ENST00000693213.1:ENST00000577880.5:ENST00000584897.5:ENST00000581711.1:ENST00000583441.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	55	2	2.14732	2.31975	2.49218	0.0237354	0.00855168	0.129075	0.0780217
chr3	5170671	5170760	1354061	0	+	0.258427	[0,0.28]	chr3	142366	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	ARL8B	ENSG00000134108.14	ENST00000429403.5:ENST00000256496.8:ENST00000455168.5:ENST00000444332.1:ENST00000419534.2:ENST00000468010.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	113	2	2.10718	2.3197200000000002	2.53226	0.0187468	0.00306159	0.108861	0.0509893
chr18	9954309	9954407	6873756	0	+	0.377551	(0.35,0.378]	chr18	680907	2	UTR3	UTR3:EXON_MRNA	VAPA	ENSG00000101558.14	ENST00000400000.7:ENST00000340541.4:ENST00000583475.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	17	218	2	2.08727	2.319705	2.55214	7.15353e-4	4.38585e-4	0.0244077	0.0192619
chr19	5660888	5660987	7005692	0	+	0.383838	(0.378,0.408]	chr19	695018	32	INTRON	INTRON	SAFB	ENSG00000160633.13	ENST00000589863.5:ENST00000588852.2:ENST00000292123.9:ENST00000592224.5:ENST00000454510.5:ENST00000589006.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	14	130	2	1.44505	2.31969	3.19433	0.014038	5.08283e-4	0.102801	0.020816
chr12	68636144	68636244	5161459	0	+	0.34	(0.32,0.35]	chr12	488585	109	INTRON	INTRON	RAP1B	ENSG00000127314.18	ENST00000460800.5:ENST00000393436.9:ENST00000250559.14:ENST00000425247.6:ENST00000501412.2:ENST00000450214.6:ENST00000463493.5:ENST00000537460.5:ENST00000341355.9:ENST00000538283.5:ENST00000541167.5:ENST00000422358.6:ENST00000489473.6:ENST00000545270.5:ENST00000538980.5:ENST00000543393.5:ENST00000542018.5:ENST00000540209.5:ENST00000378985.7:ENST00000453560.6:ENST00000534899.5:ENST00000542145.5:ENST00000539091.5:ENST00000535492.5:ENST00000540781.5:ENST00000485252.6:ENST00000538877.5:ENST00000541386.5:ENST00000543697.5:ENST00000545720.6:ENST00000541216.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	93	2	1.77409	2.319645	2.8652	0.0414296	4.9686e-4	0.146067	0.0201536
chr19	8013757	8013857	7010288	0	+	0.4	(0.378,0.408]	chr19	696049	46	INTRON	INTRON	ENSG00000267939	ENSG00000267939.1	ENST00000599756.1	lncRNA	lncRNA	lncRNA	lncRNA	3	41	2	1.97143	2.31964	2.66785	0.0398704	0.0224639	0.161534	0.11692
chr7	148745015	148745114	3444154	0	+	0.393939	(0.378,0.408]	chr7	321190	37	INTRON	INTRON	CUL1	ENSG00000055130.18	ENST00000409469.5:ENST00000662716.1:ENST00000665936.1:ENST00000663044.1:ENST00000602748.5:ENST00000663835.1:ENST00000655324.1:ENST00000662132.1:ENST00000325222.9:ENST00000656001.1:ENST00000666124.1:ENST00000671421.1:ENST00000671397.1:ENST00000662670.1:ENST00000660240.1:ENST00000662975.1:ENST00000660013.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	41	2	1.97143	2.31964	2.66785	0.0398704	0.0224639	0.161534	0.11692
chr1	61164425	61164525	128216	0	+	0.39	(0.378,0.408]	chr1	14778	315	INTRON	INTRON	NFIA	ENSG00000162599.17	ENST00000371191.5:ENST00000664495.1:ENST00000476646.5:ENST00000407417.7:ENST00000479364.1:ENST00000371189.8:ENST00000670151.1:ENST00000664149.1:ENST00000662015.1:ENST00000403491.8:ENST00000371187.7:ENST00000485903.6:ENST00000371185.6:ENST00000371184.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	77	2	1.21175	2.3196250000000003	3.4275	0.0680021	0.00126053	0.184298	0.03295
chr12	91484324	91484424	5384059	0	-	0.3	(0.28,0.32]	chr12	513479	846	INTRON	INTRON	ENSG00000289605	ENSG00000289605.1	ENST00000685093.1	lncRNA	lncRNA	lncRNA	lncRNA	4	60	2	1.81152	2.319605	2.82769	0.034446	0.0169391	0.147767	0.103888
chrX	139912129	139912229	7905696	0	-	0.32	(0.28,0.32]	chrX	804457	800	INTRON	INTRON	ATP11C	ENSG00000101974.15	ENST00000370557.5:ENST00000682941.1:ENST00000485626.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	60	2	1.81152	2.319605	2.82769	0.034446	0.0169391	0.147767	0.103888
chr14	73320070	73320169	5917915	0	-	0.555556	(0.515,0.57]	chr14	562229	33	INTRON	INTRON	NUMB	ENSG00000133961.21	ENST00000554546.5:ENST00000535282.5:ENST00000359560.7:ENST00000355058.7:ENST00000544991.7:ENST00000555238.6:ENST00000557597.5:ENST00000356296.8:ENST00000555394.5:ENST00000559312.5:ENST00000560335.5:ENST00000555738.6:ENST00000554521.6:ENST00000555859.5:ENST00000554394.5:ENST00000555307.5:ENST00000554315.5:ENST00000555987.5:ENST00000556112.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	68	2	2.06206	2.3195949999999996	2.57713	0.0135396	0.00176427	0.101363	0.0376652
chr11	2983813	2983913	4891913	0	-	0.46	(0.44,0.476]	chr11	458363	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	NAP1L4	ENSG00000205531.13	ENST00000620138.4:ENST00000380542.9:ENST00000526115.5:ENST00000532325.6:ENST00000448187.5:ENST00000399614.6:ENST00000430811.5:ENST00000529361.5:ENST00000528968.5:ENST00000530064.5:ENST00000526842.5:ENST00000531291.5:ENST00000455338.6:ENST00000534372.1	protein_coding	protein_coding	protein_coding	protein_coding	7	89	2	2.10892	2.319565	2.53021	0.0132897	8.87528e-4	0.0944742	0.0271952
chr16	23874910	23875010	6324149	0	+	0.38	(0.378,0.408]	chr16	605697	57	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000645517.1:ENST00000498739.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	111	2	1.99801	2.319555	2.6411	0.00408225	0.00174684	0.0581373	0.0375932
chr22	20555648	20555746	7479848	0	+	0.5	(0.476,0.515]	chr22	763003	1	INTRON	INTRON	MED15	ENSG00000099917.17	ENST00000444094.5:ENST00000414658.5:ENST00000433831.5:ENST00000432052.5:ENST00000292733.11:ENST00000263205.11:ENST00000477824.5:ENST00000406969.5:ENST00000382974.6:ENST00000441501.5:ENST00000473028.5:ENST00000457322.5:ENST00000428629.5:ENST00000424287.5:ENST00000423862.5:ENST00000487550.5:ENST00000476767.5:ENST00000492381.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	13	160	2	2.15941	2.31955	2.47969	0.00126395	4.8154e-4	0.0329641	0.0203411
chr19	30011436	30011536	7048262	0	+	0.36	(0.35,0.378]	chr19	702726	2	SS5_PROX	SS5_PROX:INTRON	URI1	ENSG00000105176.18	ENST00000360605.8:ENST00000392271.6:ENST00000574110.5:ENST00000575242.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	58	2	2.14264	2.319535	2.49643	0.0274795	0.00752974	0.123904	0.0773151
chr3	185769789	185769889	1885796	0	-	0.36	(0.35,0.378]	chr3	188573	711	INTRON	INTRON	IGF2BP2	ENSG00000073792.16	ENST00000382199.7:ENST00000346192.7:ENST00000457616.6:ENST00000421047.3:ENST00000461957.5:ENST00000493302.5:ENST00000466476.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	58	2	2.14264	2.319535	2.49643	0.0274795	0.00752974	0.123904	0.0773151
chr16	23688745	23688845	6323734	0	+	0.51	(0.476,0.515]	chr16	605669	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PLK1	ENSG00000166851.15	ENST00000562272.5:ENST00000300093.9:ENST00000564794.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	100	2	2.14989	2.3195300000000003	2.48917	0.00611105	0.00110233	0.0676501	0.03038
chr15	63750389	63750487	6200058	0	-	0.346939	(0.32,0.35]	chr15	591393	2	INTRON	INTRON	HERC1	ENSG00000103657.14	ENST00000443617.7:ENST00000561400.1	protein_coding	protein_coding	protein_coding	protein_coding	9	132	2	1.86816	2.319515	2.77087	0.0138355	3.09955e-4	0.0952812	0.0157776
chr9	37185611	37185711	4118311	0	+	0.44	(0.408,0.44]	chr9	375384	255	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000322831.6:ENST00000461038.5:ENST00000488607.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	55	2	1.79818	2.3194749999999997	2.84077	0.020428	0.0132196	0.122109	0.0940535
chr5	43483521	43483621	2614837	0	-	0.72	(0.57,1]	chr5	248566	3	SS5_PROX	SS5_PROX:INTRON	TMEM267	ENSG00000151881.15	ENST00000397080.8:ENST00000500337.6:ENST00000512085.5:ENST00000511525.1:ENST00000510130.1:ENST00000506860.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	29	2	1.9042	2.31947	2.73474	0.0476976	0.00241874	0.153019	0.0454275
chr6	15282841	15282940	2823314	0	+	0.555556	(0.515,0.57]	chr6	265190	335	INTRON	INTRON	JARID2	ENSG00000008083.14	ENST00000341776.7:ENST00000397311.4	protein_coding	protein_coding	protein_coding	protein_coding	5	56	2	1.63184	2.319385	3.00693	0.0545832	7.26845e-4	0.165292	0.0245647
chr8	140746159	140746259	4077487	0	-	0.49	(0.476,0.515]	chr8	370408	10	INTRON	INTRON	PTK2	ENSG00000169398.20	ENST00000696786.1:ENST00000522684.5:ENST00000395218.3:ENST00000519654.5:ENST00000521059.5:ENST00000517887.5:ENST00000519465.5:ENST00000519993.5:ENST00000340930.7:ENST00000523539.5:ENST00000519419.5:ENST00000524202.5:ENST00000521986.5:ENST00000521250.5:ENST00000521981.5:ENST00000521029.5:ENST00000520151.5:ENST00000523670.5:ENST00000519024.5:ENST00000523746.5:ENST00000510126.2:ENST00000523474.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	95	2	1.70009	2.31934	2.93859	0.0109107	0.00143107	0.0923273	0.0340925
chr16	21442109	21442208	6460736	0	-	0.525253	(0.515,0.57]	chr16	623226	15	INTRON	INTRON	NPIPB3	ENSG00000169246.16	ENST00000545358.5:ENST00000543368.1:ENST00000544154.1	protein_coding	retained_intron	protein_coding	retained_intron:processed_transcript	17	176	2	2.17072	2.319325	2.46793	6.7209e-4	1.15381e-4	0.023709	0.00920684
chr1	99706433	99706531	514717	0	-	0.357143	(0.35,0.378]	chr1	60320	26	UTR3	UTR3:EXON_MRNA	FRRS1	ENSG00000156869.14	ENST00000646001.2	protein_coding	protein_coding	protein_coding	protein_coding	6	80	2	2.15229	2.31926	2.48623	0.00938784	0.00545124	0.0817766	0.0669407
chr20	32154113	32154210	7254767	0	+	0.453608	(0.44,0.476]	chr20	736904	29	INTRON	INTRON	TM9SF4	ENSG00000101337.16	ENST00000398022.7:ENST00000217315.9	protein_coding	protein_coding	protein_coding	protein_coding	5	55	2	1.38039	2.3192	3.25801	0.0762718	0.00248185	0.195539	0.0460771
chr21	10332120	10332219	7427341	0	-	0.343434	(0.32,0.35]	chr21	757671	27	INTRON	INTRON	ENSG00000277693	ENSG00000277693.2	ENST00000622592.1:ENST00000616952.1	lncRNA	lncRNA	lncRNA	lncRNA	5	75	2	2.2664	2.3191949999999997	2.37199	0.0199969	0.00465833	0.109608	0.0629753
chr1	247311155	247311255	684251	0	-	0.5	(0.476,0.515]	chr1	80223	8	EXON_LNCRNA	EXON_LNCRNA:INTRON	ZNF496	ENSG00000162714.13	ENST00000294753.8:ENST00000462139.1:ENST00000682384.1:ENST00000461277.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	48	2	1.69138	2.31915	2.94692	0.0481165	0.00794331	0.153019	0.0797304
chr17	81894693	81894762	6691460	0	+	0.318841	(0.28,0.32]	chr17	654265	2	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ANAPC11	ENSG00000141552.18	ENST00000571570.5:ENST00000572639.5:ENST00000612413.4:ENST00000579978.5:ENST00000571024.6:ENST00000344877.10:ENST00000577425.5:ENST00000582222.5:ENST00000574924.6:ENST00000572851.6:ENST00000357385.7:ENST00000584314.5:ENST00000571874.6:ENST00000578550.5:ENST00000577747.5:ENST00000579133.5:ENST00000392376.7:ENST00000584197.5:ENST00000583839.1:ENST00000578544.1:ENST00000575195.2:ENST00000585259.1	protein_coding	protein_coding	protein_coding	protein_coding	3	51	2	1.96376	2.319145	2.67453	0.0480066	0.021289	0.153019	0.123318
chr2	108578581	108578681	846288	0	+	0.42	(0.408,0.44]	chr2	94665	74	INTRON	INTRON	LIMS1	ENSG00000169756.17	ENST00000695516.1:ENST00000544547.6:ENST00000695517.1:ENST00000695518.1	protein_coding	protein_coding	protein_coding	protein_coding	5	55	2	1.43792	2.3191300000000004	3.20034	0.062843	0.00398025	0.196433	0.0549214
chr1	39568037	39568132	427700	0	-	0.494737	(0.476,0.515]	chr1	51919	3	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	PABPC4	ENSG00000090621.15	ENST00000677006.1:ENST00000527718.2:ENST00000372858.8:ENST00000372856.7:ENST00000372857.7:ENST00000372862.7:ENST00000676523.1:ENST00000677548.1:ENST00000678980.1:ENST00000677244.1:ENST00000677609.1:ENST00000679246.1:ENST00000678287.1:ENST00000678625.1:ENST00000470443.6:ENST00000676863.1:ENST00000678894.1:ENST00000421687.6:ENST00000525669.5:ENST00000513632.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	80	2	2.01953	2.31912	2.61871	0.0163662	0.00174257	0.109586	0.0375363
chr10	75222902	75223001	4464465	0	+	0.383838	(0.378,0.408]	chr10	411844	1	INTRON	INTRON	VDAC2	ENSG00000165637.14	ENST00000543351.5:ENST00000298468.9:ENST00000332211.11:ENST00000313132.8	protein_coding	protein_coding	protein_coding	protein_coding	7	93	2	2.04798	2.319115	2.59025	0.00809949	0.00217503	0.0808864	0.0417893
chr16	8938617	8938716	6442504	0	-	0.525253	(0.515,0.57]	chr16	620589	20	INTRON	INTRON	USP7	ENSG00000187555.16	ENST00000673704.1:ENST00000344836.9:ENST00000563961.5:ENST00000563085.5:ENST00000542333.5:ENST00000566004.5:ENST00000569230.5:ENST00000566273.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	34	2	2.11313	2.3190850000000003	2.52504	0.029342	0.0256725	0.133676	0.128055
chr11	47764969	47765069	4951393	0	-	0.37	(0.35,0.378]	chr11	464447	3	SS5_PROX	SS5_PROX:INTRON	FNBP4	ENSG00000109920.13	ENST00000263773.10:ENST00000534003.5:ENST00000540172.2:ENST00000542975.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	70	2	1.83633	2.31906	2.80179	0.0335602	0.00223906	0.134145	0.0435144
chr5	131757569	131757669	2720350	0	-	0.4	(0.378,0.408]	chr5	255730	125	INTRON	INTRON	FNIP1	ENSG00000217128.13	ENST00000510461.6:ENST00000307954.12:ENST00000307968.11:ENST00000511848.1	protein_coding	protein_coding	protein_coding	protein_coding	7	94	2	1.98888	2.319045	2.64921	0.0205239	4.93004e-4	0.110999	0.0200992
chr18	189465	189564	6855139	0	+	0.454545	(0.44,0.476]	chr18	679521	88	INTRON	INTRON	USP14	ENSG00000101557.15	ENST00000582707.5:ENST00000400266.7:ENST00000261601.8:ENST00000578942.5:ENST00000383589.6:ENST00000583119.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	132	2	1.64354	2.319035	2.99453	0.0157859	6.59756e-5	0.101453	0.00672159
chr11	85662198	85662297	5013454	0	-	0.272727	[0,0.28]	chr11	472883	46	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CREBZF	ENSG00000137504.15	ENST00000682836.1:ENST00000527447.2:ENST00000490820.2:ENST00000528561.5:ENST00000260058.9:ENST00000531515.5:ENST00000534224.1:ENST00000525639.1:ENST00000527529.6:ENST00000528889.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	159	2	1.59217	2.319025	3.04588	0.0151982	0.0018829	0.108535	0.0391486
chr16	23866718	23866818	6324066	0	+	0.44	(0.408,0.44]	chr16	605693	290	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000498058.1:ENST00000645517.1:ENST00000498739.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	58	2	2.12303	2.318975	2.51492	0.0329839	0.00586883	0.133816	0.0690758
chr16	58602507	58602607	6496109	0	-	0.39	(0.378,0.408]	chr16	628638	26	INTRON	INTRON	CNOT1	ENSG00000125107.19	ENST00000317147.10:ENST00000569240.5:ENST00000567188.5:ENST00000441024.6:ENST00000565605.5:ENST00000564557.1:ENST00000569916.1:ENST00000565697.1:ENST00000569020.5:ENST00000568158.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	76	2	1.9714	2.318915	2.66643	0.0109363	0.00470023	0.0924799	0.0600108
chr16	23964619	23964719	6325048	0	+	0.46	(0.44,0.476]	chr16	605705	4	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000498739.1:ENST00000647422.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	14	170	2	2.21765	2.3189	2.42015	6.80634e-4	6.47494e-4	0.0238882	0.0230773
chr19	38650857	38650957	7065760	0	+	0.54	(0.515,0.57]	chr19	705486	22	INTRON	INTRON	ACTN4	ENSG00000130402.13	ENST00000252699.7:ENST00000588618.5:ENST00000440400.2:ENST00000424234.7:ENST00000589528.1:ENST00000390009.7:ENST00000495553.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	34	2	1.94945	2.31889	2.68833	0.0414068	0.0184931	0.161557	0.108861
chr4	77789586	77789686	2166738	0	-	0.53	(0.515,0.57]	chr4	213719	128	INTRON	INTRON	CNOT6L	ENSG00000138767.14	ENST00000504123.7:ENST00000649644.1:ENST00000515506.6:ENST00000512485.6:ENST00000504804.7:ENST00000506166.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	34	2	1.94945	2.31889	2.68833	0.0414068	0.0184931	0.161557	0.108861
chr7	23457279	23457379	3503535	0	-	0.48	(0.476,0.515]	chr7	326910	261	INTRON	INTRON	IGF2BP3	ENSG00000136231.14	ENST00000258729.8:ENST00000421467.6:ENST00000468263.5:ENST00000491719.5:ENST00000476938.5:ENST00000468005.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	88	2	2.14989	2.31889	2.48789	0.00611105	0.00256502	0.0676501	0.0466761
chr9	37205736	37205836	4118514	0	+	0.53	(0.515,0.57]	chr9	375389	188	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000461038.5:ENST00000488607.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	34	2	1.94945	2.31889	2.68833	0.0414068	0.0184931	0.161557	0.108861
chr9	133104751	133104851	4369015	0	-	0.54	(0.515,0.57]	chr9	401914	2	SS3_PROX	SS3_PROX:INTRON	RALGDS	ENSG00000160271.16	ENST00000393160.7:ENST00000372047.7:ENST00000493438.5:ENST00000469972.5:ENST00000482648.5:ENST00000393157.8:ENST00000372050.8:ENST00000372062.8:ENST00000424572.1:ENST00000460587.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	34	2	1.94945	2.31889	2.68833	0.0414068	0.0184931	0.161557	0.108861
chr7	107122404	107122504	3377946	0	+	0.38	(0.378,0.408]	chr7	316257	4	SS5_PROX	SS5_PROX:INTRON	PRKAR2B	ENSG00000005249.13	ENST00000265717.5:ENST00000393613.6:ENST00000488792.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	57	2	1.84831	2.318885	2.78946	0.0172621	0.0158859	0.111749	0.101453
chr11	13707201	13707300	4742696	0	+	0.30303	(0.28,0.32]	chr11	439171	64	INTRON	INTRON	FAR1	ENSG00000197601.13	ENST00000354817.8:ENST00000532701.1:ENST00000524933.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	60	2	1.85772	2.31888	2.78004	0.0300199	0.0193244	0.142135	0.108861
chr7	140337083	140337183	3660649	0	-	0.3	(0.28,0.32]	chr7	339780	4	SS5_PROX	SS5_PROX:INTRON	SLC37A3	ENSG00000157800.18	ENST00000477571.5:ENST00000326232.14:ENST00000447932.6:ENST00000340308.7:ENST00000473060.5:ENST00000469636.1:ENST00000498469.5:ENST00000491357.5:ENST00000485538.1:ENST00000492027.5:ENST00000477006.1:ENST00000460560.5:ENST00000485734.1:ENST00000485139.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	60	2	1.85772	2.31888	2.78004	0.0300199	0.0193244	0.142135	0.108861
chr1	168243338	168243438	250338	0	+	0.37	(0.35,0.378]	chr1	29769	9	UTR3	UTR3:EXON_MRNA	SFT2D2	ENSG00000213064.10	ENST00000271375.7	protein_coding	protein_coding	protein_coding	protein_coding	22	293	2	2.07331	2.318865	2.56442	0.00130856	3.85338e-5	0.0331539	0.00500557
chr10	21600936	21601036	4405086	0	+	0.52	(0.515,0.57]	chr10	406466	51	INTRON	INTRON	MLLT10	ENSG00000078403.17	ENST00000651097.1:ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000650772.1:ENST00000651298.1:ENST00000495130.5:ENST00000377059.7:ENST00000652258.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	55	2	2.27238	2.31886	2.36534	0.0161808	0.00404547	0.101453	0.0578376
chr2	15510511	15510611	1072653	0	-	0.3	(0.28,0.32]	chr2	114435	59	INTRON	INTRON	NBAS	ENSG00000151779.13	ENST00000281513.10:ENST00000427792.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	60	2	1.76378	2.3188	2.87382	0.0395495	0.014868	0.161534	0.0989021
chr3	33802428	33802528	1394417	0	+	0.3	(0.28,0.32]	chr3	146021	25	INTRON	INTRON	PDCD6IP	ENSG00000170248.15	ENST00000457054.6:ENST00000648706.1:ENST00000435909.5:ENST00000430877.5:ENST00000413073.1:ENST00000307296.8:ENST00000477798.5:ENST00000498147.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	60	2	1.76378	2.3188	2.87382	0.0395495	0.014868	0.161534	0.0989021
chr5	62498102	62498202	2363877	0	+	0.31	(0.28,0.32]	chr5	227945	36	INTRON	INTRON	IPO11	ENSG00000086200.17	ENST00000424533.5:ENST00000325324.11:ENST00000409296.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	60	2	1.76378	2.3188	2.87382	0.0395495	0.014868	0.161534	0.0989021
chr12	31325025	31325125	5302846	0	-	0.63	(0.57,1]	chr12	504673	4	SS5_PROX	SS5_PROX:INTRON	SINHCAF	ENSG00000139146.14	ENST00000337682.9:ENST00000539409.5:ENST00000542983.1:ENST00000539004.5:ENST00000543615.1:ENST00000536836.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	29	2	2.05026	2.318795	2.58733	0.0321326	0.00454222	0.145026	0.0595107
chr19	15388849	15388949	7147811	0	-	0.58	(0.57,1]	chr19	722074	64	INTRON	INTRON	AKAP8L	ENSG00000011243.19	ENST00000594594.6:ENST00000679638.1:ENST00000595465.6:ENST00000599137.6:ENST00000397410.10:ENST00000609519.5:ENST00000593845.5:ENST00000680649.1:ENST00000596213.6:ENST00000681170.1:ENST00000680703.1:ENST00000680017.1:ENST00000595879.6:ENST00000680303.1:ENST00000679634.1:ENST00000681744.1:ENST00000680803.1:ENST00000681459.1:ENST00000680323.1:ENST00000680774.1:ENST00000680302.1:ENST00000680103.1:ENST00000680642.1:ENST00000681405.1:ENST00000680957.1:ENST00000680865.1:ENST00000680363.1:ENST00000595087.6:ENST00000600065.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	29	2	2.05026	2.318795	2.58733	0.0321326	0.00454222	0.145026	0.0595107
chr14	96865903	96866002	5811565	0	+	0.20202	[0,0.28]	chr14	551089	11	EXON_MRNA	EXON_MRNA:INTRON	VRK1	ENSG00000100749.9	ENST00000553683.2:ENST00000680538.1:ENST00000681195.1:ENST00000681524.1:ENST00000680084.1:ENST00000679533.1:ENST00000681598.1:ENST00000679727.1:ENST00000679758.1:ENST00000679977.1:ENST00000680387.1:ENST00000680335.1:ENST00000680683.1:ENST00000681474.1:ENST00000216639.8:ENST00000681363.1:ENST00000681538.1:ENST00000680922.1:ENST00000679903.1:ENST00000681101.1:ENST00000681419.1:ENST00000679941.1:ENST00000680849.1:ENST00000679770.1:ENST00000681493.1:ENST00000681778.1:ENST00000680993.1:ENST00000681355.1:ENST00000681695.1:ENST00000681344.1:ENST00000680007.1:ENST00000679918.1:ENST00000679816.1:ENST00000680756.1:ENST00000681249.1:ENST00000680526.1:ENST00000679365.1:ENST00000680851.1:ENST00000679506.1:ENST00000679650.1:ENST00000679462.1:ENST00000680724.1:ENST00000681061.1:ENST00000681677.1:ENST00000679843.1:ENST00000555067.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	42	2	2.27119	2.31878	2.36637	0.070351	0.0500615	0.184298	0.17488
chr6	169670785	169670878	3266811	0	-	0.27957	[0,0.28]	chr6	303235	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS5_ADJ:SS3_PROX:SS5_PROX:INTRON	WDR27	ENSG00000184465.16	ENST00000448612.6:ENST00000648472.1:ENST00000423258.5:ENST00000647790.1:ENST00000647873.1:ENST00000649303.1:ENST00000647889.1:ENST00000648017.1:ENST00000650296.1:ENST00000546953.1:ENST00000649806.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	42	2	2.27119	2.31878	2.36637	0.070351	0.0500615	0.184298	0.17488
chr4	139068569	139068669	2246248	0	-	0.37	(0.35,0.378]	chr4	219547	4	INTRON	INTRON	ELF2	ENSG00000109381.21	ENST00000394235.6:ENST00000686138.1:ENST00000379550.5:ENST00000358635.7:ENST00000379549.7:ENST00000510408.5:ENST00000512627.1:ENST00000514577.5:ENST00000504314.1:ENST00000514606.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	58	2	2.09331	2.31876	2.54421	0.0315717	0.00630238	0.13151	0.0722266
chr7	73521226	73521326	3555090	0	-	0.54	(0.515,0.57]	chr7	330813	100	INTRON	INTRON	BAZ1B	ENSG00000009954.11	ENST00000339594.9:ENST00000404251.1	protein_coding	protein_coding	protein_coding	protein_coding	7	61	2	1.57902	2.318705	3.05839	0.0229035	0.00485936	0.118056	0.0640618
chr10	35464344	35464444	4425786	0	+	0.43	(0.408,0.44]	chr10	407918	85	INTRON	INTRON	CCNY	ENSG00000108100.18	ENST00000374706.5:ENST00000490012.6:ENST00000493157.6:ENST00000374704.8:ENST00000265375.13:ENST00000339497.7:ENST00000492478.5:ENST00000470025.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	48	2	1.9831	2.31865	2.6542	0.0227514	0.018491	0.117618	0.116694
chr16	21843085	21843185	6461654	0	-	0.41	(0.408,0.44]	chr16	623409	3	SS5_PROX	SS5_PROX:INTRON	NPIPB4	ENSG00000185864.18	ENST00000415645.6:ENST00000682606.1:ENST00000165086.8:ENST00000542133.5:ENST00000543660.1:ENST00000541329.1:ENST00000614197.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	48	2	1.9831	2.31865	2.6542	0.0227514	0.018491	0.117618	0.116694
chr6	37385847	37385947	2856409	0	+	0.43	(0.408,0.44]	chr6	270073	41	INTRON	INTRON	RNF8	ENSG00000112130.17	ENST00000373479.9:ENST00000229866.10:ENST00000469731.5:ENST00000498460.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	48	2	1.9831	2.31865	2.6542	0.0227514	0.018491	0.117618	0.116694
chr19	18510723	18510823	7152901	0	-	0.48	(0.476,0.515]	chr19	722886	349	INTRON	INTRON	ELL	ENSG00000105656.13	ENST00000262809.9:ENST00000594635.6:ENST00000596915.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	53	2	2.31726	2.318635	2.32001	0.015077	0.0136217	0.101682	0.0994339
chr2	131148958	131149057	864846	0	+	0.525253	(0.515,0.57]	chr2	97171	23	UTR3	UTR3:EXON_MRNA:INTRON	PLEKHB2	ENSG00000115762.17	ENST00000403716.5:ENST00000439822.6:ENST00000234115.10:ENST00000693505.1:ENST00000404460.5	protein_coding	protein_coding	protein_coding	protein_coding	6	63	2	1.90463	2.318605	2.73258	0.0141753	0.00260192	0.0959618	0.0470772
chr1	3850233	3850328	364460	0	-	0.347368	(0.32,0.35]	chr1	42765	11	INTRON	INTRON	CEP104	ENSG00000116198.14	ENST00000674558.1:ENST00000676052.1:ENST00000378230.8:ENST00000674623.1:ENST00000675200.1:ENST00000674985.1:ENST00000674879.1:ENST00000675677.1:ENST00000675750.1:ENST00000676009.1:ENST00000675108.1:ENST00000675666.1:ENST00000675375.1:ENST00000674544.1:ENST00000428079.6:ENST00000461667.2:ENST00000494653.5:ENST00000675520.1:ENST00000378223.3:ENST00000676046.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	47	2	2.23182	2.3185599999999997	2.4053	0.068598	0.0108284	0.184298	0.0920575
chr7	158904387	158904486	3456617	0	+	0.383838	(0.378,0.408]	chr7	323187	19	EXON_MRNA	EXON_MRNA:INTRON	DYNC2I1	ENSG00000126870.16	ENST00000407559.8:ENST00000444851.5:ENST00000467220.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	14	179	2	2.16975	2.3184500000000003	2.46715	0.00179441	2.33643e-4	0.0381011	0.0135358
chr3	177195197	177195294	1872427	0	-	0.381443	(0.378,0.408]	chr3	187442	12	INTRON	INTRON	TBL1XR1	ENSG00000177565.18	ENST00000457928.7:ENST00000430069.5:ENST00000673974.1:ENST00000352800.10:ENST00000422442.6:ENST00000428970.5:ENST00000424913.5:ENST00000437738.5:ENST00000431421.5:ENST00000635794.1:ENST00000630796.2:ENST00000450267.5:ENST00000630833.2:ENST00000431674.5:ENST00000422066.5:ENST00000443315.5:ENST00000627825.2:ENST00000427349.5:ENST00000413084.5:ENST00000491623.2:ENST00000637544.1:ENST00000636187.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	85	2	1.58299	2.31844	3.05389	0.0329718	6.75567e-4	0.133816	0.0236067
chr1	35889993	35890092	70707	0	+	0.50505	(0.476,0.515]	chr1	9035	10	INTRON	INTRON	AGO1	ENSG00000092847.13	ENST00000373206.5:ENST00000373204.6:ENST00000674426.1:ENST00000674304.1	protein_coding	protein_coding	protein_coding	protein_coding	6	73	2	1.82595	2.318355	2.81076	0.0202339	0.00203568	0.109955	0.0417667
chr1	31058605	31058703	412827	0	-	0.510204	(0.476,0.515]	chr1	49740	29	INTRON	INTRON	PUM1	ENSG00000134644.16	ENST00000426105.7:ENST00000373747.7:ENST00000257075.9:ENST00000424085.6:ENST00000525843.5:ENST00000440538.6:ENST00000373741.8:ENST00000373742.6:ENST00000526215.5:ENST00000525948.5:ENST00000480602.1:ENST00000524516.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	97	2	2.1318	2.31834	2.50488	0.00333541	0.00285353	0.0528877	0.0474836
chr11	768745	768843	4889641	0	-	0.530612	(0.515,0.57]	chr11	457802	15	UTR3	UTR3:EXON_MRNA:INTRON	GATD1	ENSG00000177225.17	ENST00000465313.6:ENST00000319863.13:ENST00000397472.6:ENST00000528309.5:ENST00000354286.8:ENST00000526325.5:ENST00000526650.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	47	2	2.28534	2.318295	2.35125	0.0436431	0.0061678	0.162255	0.067653
chr16	81036406	81036506	6404100	0	+	0.73	(0.57,1]	chr16	614931	2	SS5_PROX	SS5_PROX:INTRON	ATMIN	ENSG00000166454.10	ENST00000299575.5:ENST00000562969.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	26	2	1.83769	2.31829	2.79889	0.0297587	0.0110274	0.12908	0.0927187
chr1	246048456	246048556	676115	0	-	0.34	(0.32,0.35]	chr1	79713	600	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000391836.3:ENST00000464398.1:ENST00000453676.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	56	2	1.55682	2.3182850000000004	3.07975	0.0724487	0.00554235	0.188101	0.0674105
chr9	112078337	112078437	4315798	0	-	0.43	(0.408,0.44]	chr9	396913	4	SS5_PROX	SS5_PROX:INTRON	SUSD1	ENSG00000106868.17	ENST00000374270.8:ENST00000374263.7:ENST00000355396.7:ENST00000374264.6	protein_coding	protein_coding	protein_coding	protein_coding	4	48	2	1.6306	2.318275	3.00595	0.0544158	0.00781452	0.182272	0.0759016
chr21	36344078	36344178	7403936	0	+	0.43	(0.408,0.44]	chr21	754309	1	SS3_PROX	SS3_PROX:INTRON	MORC3	ENSG00000159256.13	ENST00000400485.6:ENST00000487909.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	65	2	1.69172	2.318265	2.94481	0.0486032	0.00110214	0.153946	0.03038
chr19	40621709	40621804	7069740	0	+	0.494737	(0.476,0.515]	chr19	706394	19	INTRON	INTRON	LTBP4	ENSG00000090006.18	ENST00000204005.13:ENST00000308370.11:ENST00000396819.8:ENST00000243562.13:ENST00000601032.5:ENST00000612121.4:ENST00000599724.5:ENST00000597071.5:ENST00000595118.5:ENST00000622565.4:ENST00000593463.5:ENST00000618486.4:ENST00000318809.11:ENST00000597816.5:ENST00000596351.5:ENST00000622107.4:ENST00000594448.5:ENST00000595665.1:ENST00000622457.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	66	2	1.48441	2.318215	3.15202	0.0315624	0.00455841	0.144381	0.0595107
chr14	37119484	37119584	5877482	0	-	0.39	(0.378,0.408]	chr14	558013	2441	INTRON	INTRON	SLC25A21	ENSG00000183032.12	ENST00000331299.6:ENST00000555449.5:ENST00000557611.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	68	2	2.17296	2.318205	2.46345	0.0110512	0.00827342	0.0873897	0.0813266
chr10	68766179	68766279	4442738	0	+	0.38	(0.378,0.408]	chr10	409689	1	SS5_PROX	SS5_PROX:INTRON	CCAR1	ENSG00000060339.14	ENST00000630771.2:ENST00000543719.5:ENST00000541012.5:ENST00000265872.11:ENST00000539539.5:ENST00000543229.5:ENST00000536012.5:ENST00000543225.5:ENST00000540210.5:ENST00000543706.1:ENST00000539250.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	42	2	2.2259	2.318135	2.41037	0.0662381	0.0100185	0.181924	0.0880217
chr1	246013659	246013759	675767	0	-	0.43	(0.408,0.44]	chr1	79713	252	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000391836.3:ENST00000464398.1:ENST00000453676.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	40	2	1.81572	2.31807	2.82042	0.0626779	0.0120121	0.175915	0.0962115
chr14	21222164	21222264	5834684	0	-	0.42	(0.408,0.44]	chr14	554424	87	INTRON	INTRON	HNRNPC	ENSG00000092199.19	ENST00000336053.10:ENST00000553300.6:ENST00000554969.5:ENST00000556142.5:ENST00000554455.5:ENST00000430246.6:ENST00000553753.5:ENST00000555309.5:ENST00000555914.5:ENST00000557442.5:ENST00000556628.5:ENST00000556513.5:ENST00000555883.5:ENST00000557201.5:ENST00000556897.5:ENST00000420743.6:ENST00000557157.5:ENST00000554539.5:ENST00000554383.5:ENST00000554417.1:ENST00000555215.5:ENST00000555137.5:ENST00000554891.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	40	2	1.81572	2.31807	2.82042	0.0626779	0.0120121	0.175915	0.0962115
chr16	70406083	70406182	6511134	0	-	0.424242	(0.408,0.44]	chr16	630689	46	INTRON	INTRON	ST3GAL2	ENSG00000157350.13	ENST00000342907.3:ENST00000566097.1:ENST00000561708.1:ENST00000567586.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	40	2	1.81572	2.31807	2.82042	0.0626779	0.0120121	0.175915	0.0962115
chr8	11809067	11809143	3702588	0	+	0.486842	(0.476,0.515]	chr8	343495	2	SS5_PROX	SS5_PROX:INTRON	FDFT1	ENSG00000079459.13	ENST00000538689.4:ENST00000615631.4:ENST00000618539.4:ENST00000530337.5:ENST00000623368.3:ENST00000446331.6:ENST00000443614.6:ENST00000220584.9:ENST00000525607.5:ENST00000525283.5:ENST00000529464.5:ENST00000525900.5:ENST00000528812.5:ENST00000622850.2:ENST00000530664.5:ENST00000525954.5:ENST00000531733.1:ENST00000531249.2:ENST00000532266.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	103	2	2.01618	2.318025	2.61987	0.0180082	2.71328e-4	0.106756	0.014624
chr12	50418807	50418906	5136515	0	+	0.464646	(0.44,0.476]	chr12	484368	20	INTRON	INTRON	LARP4	ENSG00000161813.23	ENST00000550522.5:ENST00000293618.12:ENST00000429001.7:ENST00000398473.7:ENST00000548174.5:ENST00000548697.5:ENST00000548993.5:ENST00000522085.5:ENST00000518444.5:ENST00000551886.5:ENST00000523389.5:ENST00000518561.5:ENST00000347328.9:ENST00000550260.1:ENST00000517559.5:ENST00000552445.1	protein_coding	protein_coding	protein_coding	protein_coding	4	53	2	2.13779	2.31801	2.49823	0.0264596	0.00718224	0.122506	0.0756118
chr20	63917359	63917458	7301182	0	+	0.444444	(0.44,0.476]	chr20	743137	84	INTRON	INTRON	DNAJC5	ENSG00000101152.11	ENST00000360864.9:ENST00000470551.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	53	2	2.13779	2.31801	2.49823	0.0264596	0.00718224	0.122506	0.0756118
chr1	32652061	32652150	65836	0	+	0.382022	(0.378,0.408]	chr1	8414	1	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	RBBP4	ENSG00000162521.19	ENST00000414241.7:ENST00000527118.5:ENST00000373493.10:ENST00000401893.7:ENST00000524393.5:ENST00000492348.6:ENST00000526193.5:ENST00000525506.1:ENST00000465780.1:ENST00000373485.5:ENST00000477563.6:ENST00000458695.6:ENST00000490500.5:ENST00000445722.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	90	2	2.02407	2.317975	2.61188	0.00680892	0.0047055	0.0711884	0.0631419
chr1	21161567	21161667	393477	0	-	0.45	(0.44,0.476]	chr1	46836	486	INTRON	INTRON	EIF4G3	ENSG00000075151.24	ENST00000374935.7:ENST00000602326.6:ENST00000685872.1:ENST00000686579.1:ENST00000688741.1:ENST00000400422.6:ENST00000634879.2:ENST00000693470.1:ENST00000685814.1:ENST00000356916.7:ENST00000682284.1:ENST00000438975.5:ENST00000411888.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	53	2	2.19078	2.3179600000000002	2.44514	0.0226089	0.0087381	0.117489	0.0845538
chr22	47871959	47872059	7541788	0	+	0.46	(0.44,0.476]	chr22	770801	74	INTRON	INTRON	ENSG00000224271	ENSG00000224271.7	ENST00000664761.1:ENST00000650683.1:ENST00000651536.1:ENST00000651445.1:ENST00000650660.1:ENST00000651403.1:ENST00000652228.1:ENST00000651124.1:ENST00000651003.1:ENST00000651939.1:ENST00000652080.1:ENST00000651033.1:ENST00000651584.1	lncRNA	lncRNA	lncRNA	lncRNA	4	53	2	2.19078	2.3179600000000002	2.44514	0.0226089	0.0087381	0.117489	0.0845538
chr9	135949399	135949499	4372449	0	-	0.47	(0.44,0.476]	chr9	402541	11	INTRON	INTRON	UBAC1	ENSG00000130560.9	ENST00000371756.4:ENST00000478485.1:ENST00000486258.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	53	2	2.19078	2.3179600000000002	2.44514	0.0226089	0.0087381	0.117489	0.0845538
chr1	11982990	11983090	26456	0	+	0.37	(0.35,0.378]	chr1	3070	4	SS5_PROX	SS5_PROX:INTRON	MFN2	ENSG00000116688.18	ENST00000444836.5:ENST00000674817.1:ENST00000675053.1:ENST00000675298.1:ENST00000675817.1:ENST00000675194.1:ENST00000676369.1:ENST00000412236.2:ENST00000675530.1:ENST00000674548.1:ENST00000675959.1:ENST00000675872.1:ENST00000676426.1:ENST00000674706.1:ENST00000674658.1:ENST00000674910.1:ENST00000675231.1:ENST00000490079.5:ENST00000484391.5:ENST00000497302.1:ENST00000235329.10:ENST00000676293.1:ENST00000675919.1:ENST00000675987.1:ENST00000675512.1:ENST00000675113.1:ENST00000675781.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	85	2	2.28182	2.31792	2.35402	0.00637232	0.00596483	0.0724821	0.0674604
chr7	44797238	44797334	3315597	0	+	0.572917	(0.57,1]	chr7	308119	4	UTR5	UTR5:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PPIA	ENSG00000196262.15	ENST00000451562.5:ENST00000481437.5:ENST00000479021.1:ENST00000468812.6:ENST00000676977.1:ENST00000677107.1:ENST00000355968.10:ENST00000489459.5:ENST00000415933.5:ENST00000620047.5:ENST00000678643.1:ENST00000677521.1:ENST00000678789.1:ENST00000678165.1:ENST00000677022.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	15	99	2	1.56282	2.3179	3.07298	0.0114364	2.65656e-6	0.0956037	0.00115411
chr5	32590864	32590963	2334805	0	+	0.494949	(0.476,0.515]	chr5	225358	19	INTRON	INTRON	SUB1	ENSG00000113387.12	ENST00000506237.5:ENST00000512913.5:ENST00000513013.5:ENST00000265073.9:ENST00000511615.5:ENST00000515355.5:ENST00000502897.5:ENST00000510442.1:ENST00000504789.5:ENST00000511988.5:ENST00000504016.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	69	2	1.90361	2.31783	2.73205	0.0159328	0.0102027	0.109464	0.0850389
chr3	45002623	45002719	1413670	0	+	0.322917	(0.32,0.35]	chr3	148392	5	INTRON	INTRON	EXOSC7	ENSG00000075914.13	ENST00000461361.5:ENST00000482004.5:ENST00000265564.8:ENST00000468667.5:ENST00000491476.5:ENST00000481405.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	62	2	2.1362	2.317745	2.49929	0.0291083	0.00776612	0.128029	0.0787356
chr3	172080198	172080298	1559950	0	+	0.39	(0.378,0.408]	chr3	161527	329	INTRON	INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000421757.5:ENST00000469491.5:ENST00000336824.8:ENST00000423424.5:ENST00000416957.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	80	2	2.20712	2.317695	2.42827	0.00978751	0.00336942	0.0835427	0.0532965
chr3	196491481	196491581	1899900	0	-	0.51	(0.476,0.515]	chr3	190261	24	INTRON	INTRON	RNF168	ENSG00000163961.4	ENST00000318037.3:ENST00000437070.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	109	2	2.09382	2.317695	2.54157	0.00697457	0.0012877399999999999	0.0718189	0.0333764
chr17	32876277	32876377	6757108	0	-	0.47	(0.44,0.476]	chr17	664080	1	SS5_PROX	SS5_PROX:INTRON	MYO1D	ENSG00000176658.17	ENST00000318217.10:ENST00000579584.5:ENST00000583621.1	protein_coding	protein_coding	protein_coding	protein_coding	8	89	2	1.38315	2.317685	3.25222	0.0472692	2.39476e-4	0.152795	0.0136403
chr8	129522477	129522577	4060507	0	-	0.35	(0.32,0.35]	chr8	369648	119	INTRON	INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1:ENST00000676273.1:ENST00000667643.1:ENST00000668791.1:ENST00000663716.1:ENST00000663572.1:ENST00000676148.1:ENST00000667962.1:ENST00000674877.1:ENST00000675316.1:ENST00000674656.1:ENST00000446592.7:ENST00000667341.1:ENST00000675186.1:ENST00000652971.1:ENST00000661447.1:ENST00000674863.1:ENST00000675498.1:ENST00000675527.1:ENST00000676108.1:ENST00000657647.1:ENST00000675589.1:ENST00000675913.1:ENST00000675109.1:ENST00000671632.1:ENST00000671311.1:ENST00000676099.1:ENST00000660652.1:ENST00000675522.1:ENST00000675183.1:ENST00000658861.1:ENST00000663991.1:ENST00000675044.1:ENST00000675435.1:ENST00000674639.1:ENST00000676069.1:ENST00000675532.1:ENST00000674762.1:ENST00000523151.6:ENST00000675948.1:ENST00000665364.1:ENST00000657251.1:ENST00000675166.1:ENST00000674883.1:ENST00000675867.1:ENST00000674580.1:ENST00000675393.1:ENST00000520048.1:ENST00000674906.1:ENST00000676030.1:ENST00000670588.1:ENST00000675072.1:ENST00000664936.1:ENST00000652914.1:ENST00000657069.1	lncRNA	lncRNA	lncRNA	lncRNA	7	95	2	1.91062	2.317675	2.72473	0.00946346	0.00433316	0.0863138	0.0579683
chr20	38425834	38425934	7342210	0	-	0.46	(0.44,0.476]	chr20	748307	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	SNHG17	ENSG00000196756.14	ENST00000654008.2:ENST00000658076.1:ENST00000662982.2:ENST00000456953.7:ENST00000654183.2:ENST00000663540.2:ENST00000651115.2:ENST00000667835.1:ENST00000660885.2:ENST00000662213.1:ENST00000665233.2:ENST00000666268.2:ENST00000665735.1:ENST00000660558.2:ENST00000691280.1:ENST00000658488.2:ENST00000688336.1:ENST00000668054.2:ENST00000690441.1:ENST00000655520.2:ENST00000687490.1:ENST00000664626.1:ENST00000658051.1:ENST00000668042.1:ENST00000686971.1:ENST00000663187.1:ENST00000669114.1:ENST00000653343.1:ENST00000666225.1:ENST00000659186.1:ENST00000671309.1:ENST00000669405.1:ENST00000666806.1:ENST00000657868.1:ENST00000663534.1:ENST00000658141.1:ENST00000689917.1:ENST00000664073.2:ENST00000653697.1:ENST00000656320.1:ENST00000686814.1:ENST00000417578.7:ENST00000654853.1:ENST00000665440.1:ENST00000436764.7:ENST00000668482.2:ENST00000671249.1:ENST00000655692.1:ENST00000662568.1:ENST00000659255.1:ENST00000665693.1:ENST00000693250.1:ENST00000691368.1:ENST00000693227.1:ENST00000690361.1:ENST00000670051.1:ENST00000667912.1:ENST00000693665.1:ENST00000665181.1:ENST00000687532.1:ENST00000691386.1:ENST00000693684.1:ENST00000666331.1:ENST00000669480.1:ENST00000658905.1:ENST00000661252.1:ENST00000669137.1:ENST00000688133.1:ENST00000689414.1:ENST00000691314.1:ENST00000669033.1:ENST00000686145.1:ENST00000653938.1:ENST00000663784.1:ENST00000665003.1:ENST00000659400.1:ENST00000653753.1:ENST00000449469.5:ENST00000654389.1:ENST00000657429.1:ENST00000667412.1:ENST00000654092.1:ENST00000653277.1:ENST00000656023.1:ENST00000692262.1:ENST00000414142.5:ENST00000659753.1:ENST00000670958.1:ENST00000657216.2:ENST00000664636.1:ENST00000657843.1:ENST00000660189.1:ENST00000660064.1:ENST00000655198.1:ENST00000423536.6:ENST00000658455.1:ENST00000666419.1:ENST00000413755.5	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	14	174	2	2.27117	2.317645	2.3641200000000002	7.22667e-4	6.33326e-4	0.0247245	0.0227457
chr6	17960111	17960210	3068278	0	-	0.333333	(0.32,0.35]	chr6	285105	83	INTRON	INTRON	KIF13A	ENSG00000137177.20	ENST00000378814.9:ENST00000259711.11:ENST00000378826.6:ENST00000378843.6:ENST00000636847.1:ENST00000507576.1:ENST00000505588.1:ENST00000502704.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	34	2	2.23182	2.31745	2.40308	0.068598	0.0417732	0.184298	0.161736
chr7	10499036	10499136	3481769	0	-	0.35	(0.32,0.35]	chr7	325766	459	INTRON	INTRON	MGC4859	ENSG00000283117.1	ENST00000634803.1	lncRNA	lncRNA	lncRNA	lncRNA	2	34	2	2.23182	2.31745	2.40308	0.068598	0.0417732	0.184298	0.161736
chr1	95195232	95195331	167352	0	+	0.424242	(0.408,0.44]	chr1	18143	35	UTR3	UTR3:EXON_MRNA:INTRON	TLCD4:TLCD4-RWDD3	ENSG00000152078.10:ENSG00000271092.5	ENST00000370203.9:ENST00000604534.5:ENST00000604203.1	protein_coding	protein_coding	protein_coding	protein_coding	3	41	2	2.18807	2.317405	2.44674	0.0708044	0.00868283	0.184528	0.0842798
chr14	21259830	21259928	5835071	0	-	0.438776	(0.408,0.44]	chr14	554465	49	INTRON	INTRON	HNRNPC	ENSG00000092199.19	ENST00000336053.10:ENST00000553300.6:ENST00000554969.5:ENST00000556142.5:ENST00000554455.5:ENST00000430246.6:ENST00000553753.5:ENST00000555309.5:ENST00000555914.5:ENST00000557442.5:ENST00000556628.5:ENST00000556513.5:ENST00000555883.5:ENST00000557201.5:ENST00000556897.5:ENST00000420743.6:ENST00000554539.5:ENST00000554383.5:ENST00000555215.5:ENST00000555137.5:ENST00000554891.5:ENST00000556226.5:ENST00000555176.5:ENST00000553614.5:ENST00000557336.1:ENST00000557768.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	125	2	2.15238	2.317375	2.48237	0.00382586	5.72623e-4	0.0542786	0.0217398
chr7	151516394	151516494	3674891	0	-	0.51	(0.476,0.515]	chr7	341207	179	INTRON	INTRON	RHEB	ENSG00000106615.10	ENST00000262187.10:ENST00000472642.5:ENST00000478470.5:ENST00000496004.5:ENST00000470370.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	81	2	1.59365	2.31731	3.04097	0.0306944	7.0601e-4	0.13151	0.0241881
chr10	110123516	110123596	4519566	0	+	0.3125	(0.28,0.32]	chr10	416838	1	SS3_PROX	SS3_PROX:INTRON	ADD3	ENSG00000148700.15	ENST00000360162.7:ENST00000277900.12:ENST00000356080.9:ENST00000486014.1:ENST00000488837.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	69	2	1.76061	2.317215	2.87382	0.0253826	0.014868	0.133676	0.0989021
chr15	52029371	52029471	6029124	0	+	0.36	(0.35,0.378]	chr15	574427	11	INTRON	INTRON	MAPK6	ENSG00000069956.14	ENST00000560802.1:ENST00000691380.1:ENST00000558063.5:ENST00000560254.1:ENST00000681888.1:ENST00000261845.7:ENST00000680066.1:ENST00000680777.1:ENST00000558100.1:ENST00000680652.1:ENST00000558841.1:ENST00000558891.1:ENST00000560774.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	91	2	2.22667	2.3171850000000003	2.4077	0.0122026	0.0022763	0.0910127	0.0437013
chr10	63340885	63340985	4634139	0	-	0.42	(0.408,0.44]	chr10	426226	718	INTRON	INTRON	JMJD1C	ENSG00000171988.20	ENST00000399262.7:ENST00000633035.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	40	2	1.85305	2.317135	2.78122	0.0543543	0.015812	0.182243	0.101453
chr19	15250469	15250566	7146565	0	-	0.412371	(0.408,0.44]	chr19	721885	8	INTRON	INTRON	BRD4	ENSG00000141867.19	ENST00000679869.1:ENST00000263377.6:ENST00000371835.8	protein_coding	protein_coding	protein_coding	protein_coding	3	40	2	1.85305	2.317135	2.78122	0.0543543	0.015812	0.182243	0.101453
chr12	123344757	123344857	5445002	0	-	0.49	(0.476,0.515]	chr12	521098	1	SS5_PROX	SS5_PROX:INTRON	SBNO1	ENSG00000139697.14	ENST00000602398.3:ENST00000267176.8:ENST00000420886.6	protein_coding	protein_coding	protein_coding	protein_coding	8	88	2	1.79341	2.317045	2.84068	0.009837	0.00217133	0.0877296	0.0417893
chr6	42887156	42887255	2867739	0	+	0.333333	(0.32,0.35]	chr6	271403	8	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	RPL7L1	ENSG00000146223.16	ENST00000493763.7:ENST00000483998.6:ENST00000304734.9:ENST00000459829.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	113	2	1.44797	2.31704	3.18611	0.0304475	6.68157e-4	0.143385	0.0235847
chr8	100949100	100949200	4005944	0	-	0.33	(0.32,0.35]	chr8	366680	2	SS3_PROX	SS3_PROX:INTRON	YWHAZ	ENSG00000164924.18	ENST00000395958.6:ENST00000395957.6:ENST00000457309.2:ENST00000395956.7:ENST00000353245.7:ENST00000521309.5:ENST00000395953.6:ENST00000395948.6:ENST00000395951.7:ENST00000419477.6:ENST00000480304.5:ENST00000518736.5:ENST00000517727.5:ENST00000521328.5:ENST00000418997.1:ENST00000437293.5:ENST00000523131.1:ENST00000523938.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	62	2	2.18092	2.3169899999999997	2.45306	0.0256608	0.00916394	0.120491	0.0855292
chr7	141755875	141755975	3440279	0	+	0.34	(0.32,0.35]	chr7	320701	51	INTRON	INTRON	SSBP1	ENSG00000106028.11	ENST00000465582.5	protein_coding	protein_coding	protein_coding	protein_coding	4	57	2	2.18777	2.3167850000000003	2.4458	0.0425977	0.00951422	0.148082	0.0863913
chr1	65383295	65383394	136837	0	+	0.464646	(0.44,0.476]	chr1	15382	34	INTRON	INTRON	DNAJC6	ENSG00000116675.16	ENST00000494710.6:ENST00000263441.11:ENST00000395325.7:ENST00000371069.5	protein_coding	protein_coding	protein_coding	protein_coding	7	89	2	2.20714	2.316785	2.42643	0.00493236	0.0033369	0.061186	0.0528877
chr7	6029931	6030031	3475942	0	-	0.46	(0.44,0.476]	chr7	325180	5	INTRON	INTRON	EIF2AK1	ENSG00000086232.13	ENST00000199389.11	protein_coding	protein_coding	protein_coding	protein_coding	18	220	2	1.77138	2.316755	2.86213	0.00531657	1.10204e-5	0.0639089	0.00244464
chr7	102002398	102002498	3368218	0	+	0.48	(0.476,0.515]	chr7	315233	424	INTRON	INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000497815.5:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000558469.5:ENST00000560541.5:ENST00000558836.5:ENST00000606749.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	54	2	1.86492	2.316735	2.76855	0.0550347	0.00244302	0.165463	0.0456956
chr12	98538270	98538369	5198854	0	+	0.393939	(0.378,0.408]	chr12	491821	3	INTRON	INTRON	TMPO	ENSG00000120802.14	ENST00000556029.6:ENST00000343315.9:ENST00000393053.6:ENST00000556678.1	protein_coding	protein_coding	protein_coding	protein_coding	10	120	2	1.62876	2.31673	3.0047	0.0174498	1.9857e-4	0.104688	0.0122787
chr6	27810756	27810846	2839008	0	+	0.488889	(0.476,0.515]	chr6	266438	4	UTR3	UTR3:EXON_MRNA	H3C10	ENSG00000278828.2	ENST00000369163.4	protein_coding	protein_coding	protein_coding	protein_coding	9	111	2	2.24352	2.316705	2.38989	0.00220823	0.0019689	0.0418375	0.0411469
chr1	231368187	231368287	655715	0	-	0.3	(0.28,0.32]	chr1	77794	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	EGLN1:ENSG00000287856	ENSG00000135766.9:ENSG00000287856.1	ENST00000667629.1:ENST00000366641.4:ENST00000653908.1:ENST00000653198.1:ENST00000658954.1:ENST00000670301.1:ENST00000662216.1:ENST00000654803.1:ENST00000476717.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	50	2	1.90263	2.3167	2.73077	0.0503272	0.0220748	0.17488	0.115395
chr6	147230252	147230351	2988966	0	+	0.292929	(0.28,0.32]	chr6	280001	238	INTRON	INTRON	STXBP5	ENSG00000164506.15	ENST00000321680.11:ENST00000367481.7:ENST00000546097.5:ENST00000367480.7	protein_coding	protein_coding	protein_coding	protein_coding	3	50	2	1.90263	2.3167	2.73077	0.0503272	0.0220748	0.17488	0.115395
chr5	65949985	65950085	2371078	0	+	0.58	(0.57,1]	chr5	228472	228	INTRON	INTRON	ERBIN	ENSG00000112851.15	ENST00000380943.6:ENST00000507490.1:ENST00000416865.6:ENST00000380935.5:ENST00000284037.10:ENST00000380938.6:ENST00000511297.5:ENST00000506030.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	41	2	2.07956	2.316675	2.55379	0.013114	0.0015786	0.0998629	0.0362091
chr15	57117059	57117158	6034103	0	+	0.323232	(0.32,0.35]	chr15	574693	74	INTRON	INTRON	TCF12	ENSG00000140262.18	ENST00000438423.6:ENST00000267811.9:ENST00000333725.10:ENST00000560190.5:ENST00000559609.5:ENST00000557843.5:ENST00000557947.5:ENST00000561152.1:ENST00000561346.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	58	2	1.8526	2.316665	2.78073	0.0332438	0.01481	0.134145	0.106702
chr11	28117574	28117674	4752246	0	+	0.29	(0.28,0.32]	chr11	440072	36	INTRON	INTRON	METTL15	ENSG00000169519.21	ENST00000406787.7:ENST00000403099.5:ENST00000451385.6:ENST00000407364.8:ENST00000532947.2:ENST00000634627.1:ENST00000634973.1:ENST00000303459.10:ENST00000634721.1:ENST00000634762.1:ENST00000437814.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	60	2	1.90249	2.31663	2.73077	0.0261803	0.0220748	0.133676	0.115395
chr1	1776593	1776693	361718	0	-	0.48	(0.476,0.515]	chr1	42219	108	INTRON	INTRON	NADK	ENSG00000008130.15	ENST00000378625.5:ENST00000341991.7:ENST00000341426.9:ENST00000492845.6:ENST00000492768.5:ENST00000460602.5:ENST00000464373.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	58	2	1.82595	2.31662	2.80729	0.0202339	0.0126008	0.109955	0.0980703
chr5	62416116	62416215	2363033	0	+	0.373737	(0.35,0.378]	chr5	227840	23	INTRON	INTRON	IPO11	ENSG00000086200.17	ENST00000514647.5:ENST00000424533.5:ENST00000505902.5:ENST00000325324.11:ENST00000506200.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	89	2	2.03655	2.316555	2.59656	0.00638551	0.00535994	0.0693551	0.0663076
chr4	74161066	74161165	1972333	0	+	0.393939	(0.378,0.408]	chr4	197723	4	EXON_LNCRNA	EXON_LNCRNA:INTRON	MTHFD2L	ENSG00000163738.19	ENST00000429519.5:ENST00000429335.5:ENST00000433372.5:ENST00000423607.6:ENST00000395759.6:ENST00000325278.7:ENST00000359107.10:ENST00000461101.1:ENST00000484725.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	95	2	1.72469	2.31652	2.90835	0.0155	0.00133715	0.100909	0.0335955
chr1	89557713	89557813	157730	0	+	0.31	(0.28,0.32]	chr1	17171	74	INTRON	INTRON	LRRC8B	ENSG00000197147.15	ENST00000330947.7:ENST00000439853.6:ENST00000449440.5:ENST00000640258.1:ENST00000639264.1	protein_coding	protein_coding	protein_coding	protein_coding	4	60	2	1.71442	2.316465	2.91851	0.0454351	0.0130672	0.164236	0.093385
chr2	10149130	10149230	690994	0	+	0.48	(0.476,0.515]	chr2	81105	31	INTRON	INTRON	RRM2	ENSG00000171848.16	ENST00000641498.1:ENST00000646978.1:ENST00000381786.7	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	7	81	2	1.62782	2.316445	3.00507	0.0274391	8.38796e-4	0.123904	0.0263691
chr1	6828304	6828403	6073	0	+	0.555556	(0.515,0.57]	chr1	1143	27	INTRON	INTRON	CAMTA1	ENSG00000171735.19	ENST00000303635.12:ENST00000490738.5:ENST00000476163.5:ENST00000473578.5:ENST00000557126.5:ENST00000467404.6:ENST00000461311.1:ENST00000486138.1:ENST00000482934.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	35	2	2.23915	2.3163299999999998	2.39351	0.0596178	0.0100431	0.16883600000000001	0.0881096
chr1	6596355	6596455	368184	0	-	0.48	(0.476,0.515]	chr1	43253	4	INTRON	INTRON	KLHL21	ENSG00000162413.17	ENST00000377663.3:ENST00000377658.8:ENST00000467612.5:ENST00000496707.5:ENST00000463043.1	protein_coding	protein_coding	protein_coding	protein_coding	10	122	2	1.99499	2.316295	2.6376	0.00408599	6.87765e-4	0.0581771	0.0240091
chr14	63499633	63499733	5907467	0	-	0.52	(0.515,0.57]	chr14	561132	454	INTRON	INTRON	PPP2R5E	ENSG00000154001.14	ENST00000337537.8:ENST00000422769.6:ENST00000555899.1:ENST00000556484.5:ENST00000553266.5:ENST00000556878.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	41	2	1.60221	2.31629	3.03037	0.0581855	0.00608732	0.188704	0.0676501
chr16	70525117	70525217	6385146	0	+	0.52	(0.515,0.57]	chr16	613858	1	SS5_PROX	SS5_PROX:INTRON	SF3B3	ENSG00000189091.13	ENST00000566095.6:ENST00000577085.1:ENST00000302516.10:ENST00000567654.1:ENST00000564899.1	protein_coding	protein_coding	protein_coding	protein_coding	4	41	2	1.60221	2.31629	3.03037	0.0581855	0.00608732	0.188704	0.0676501
chr3	17157648	17157745	1624537	0	-	0.360825	(0.35,0.378]	chr3	168056	6	UTR3	UTR3:EXON_MRNA	TBC1D5	ENSG00000131374.15	ENST00000253692.11:ENST00000696125.1	protein_coding	protein_coding	protein_coding	protein_coding	4	60	2	2.10859	2.3162700000000003	2.52395	0.0272722	0.00824736	0.136494	0.0773378
chr14	103684915	103684985	5828218	0	+	0.328571	(0.32,0.35]	chr14	553122	3	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	KLC1	ENSG00000126214.22	ENST00000348520.10:ENST00000380038.7:ENST00000334553.11:ENST00000389744.8:ENST00000555836.5:ENST00000347839.10:ENST00000553286.5:ENST00000557575.5:ENST00000452929.6:ENST00000554280.5:ENST00000557450.5:ENST00000554228.5:ENST00000634686.1:ENST00000246489.11:ENST00000445352.8:ENST00000537046.6:ENST00000553325.5:ENST00000555856.1:ENST00000535194.2:ENST00000553680.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	14	203	2	2.07271	2.316235	2.55976	0.00457295	1.18233e-4	0.0595107	0.00930884
chr10	101788714	101788813	4680662	0	-	0.333333	(0.32,0.35]	chr10	431944	8	INTRON	INTRON	OGA	ENSG00000198408.14	ENST00000439817.5:ENST00000361464.8:ENST00000357797.9:ENST00000482611.5:ENST00000494347.5:ENST00000479811.5:ENST00000461645.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	17	227	2	2.16203	2.31623	2.47043	0.00120579	4.46705e-4	0.0317131	0.0191697
chr5	159171900	159171999	2758808	0	-	0.292929	(0.28,0.32]	chr5	260338	17	INTRON	INTRON	RNF145	ENSG00000145860.12	ENST00000424310.7:ENST00000519865.5:ENST00000274542.6:ENST00000611185.4:ENST00000521606.6:ENST00000518802.5:ENST00000520638.1:ENST00000521266.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	78	2	1.75863	2.3162249999999998	2.87382	0.0177071	0.014868	0.11319	0.0989021
chr11	118450294	118450393	4872259	0	+	0.373737	(0.35,0.378]	chr11	454987	4	INTRON	INTRON	ENSG00000285827:KMT2A	ENSG00000285827.1:ENSG00000118058.24	ENST00000648261.1:ENST00000389506.10:ENST00000534358.8:ENST00000533790.3:ENST00000527869.7:ENST00000649690.2:ENST00000691053.1:ENST00000531904.6:ENST00000649699.1:ENST00000648029.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	58	2	2.23651	2.31617	2.39583	0.020879	0.0107976	0.111766	0.0920575
chr20	34894022	34894122	7261160	0	+	0.35	(0.32,0.35]	chr20	737650	4	SS5_PROX	SS5_PROX:INTRON	ACSS2	ENSG00000131069.20	ENST00000481971.5:ENST00000488172.5:ENST00000497927.5:ENST00000481284.5:ENST00000475459.6:ENST00000484354.1:ENST00000480274.1:ENST00000477932.5:ENST00000473172.5:ENST00000493805.6:ENST00000480978.5:ENST00000360596.7:ENST00000467019.5:ENST00000253382.5:ENST00000476922.5:ENST00000464399.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	10	94	2	1.21206	2.31616	3.42026	0.0501513	0.00219805	0.17488	0.0417893
chr7	158702648	158702748	3688781	0	-	0.36	(0.35,0.378]	chr7	342287	3	SS3_PROX	SS3_PROX:INTRON	NCAPG2	ENSG00000146918.20	ENST00000356309.8:ENST00000432615.5:ENST00000409423.5:ENST00000409339.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	80	2	1.90041	2.316025	2.73164	0.0145936	0.00387645	0.105992	0.0543578
chr1	21756445	21756545	396598	0	-	0.4	(0.378,0.408]	chr1	47334	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	USP48	ENSG00000090686.16	ENST00000400301.5:ENST00000308271.14:ENST00000529637.5:ENST00000421625.6:ENST00000527823.5:ENST00000532737.1	protein_coding	protein_coding	protein_coding	protein_coding	18	225	2	2.18363	2.315905	2.44818	0.00235136	5.66057e-5	0.0435844	0.00614431
chr12	98518412	98518512	5198647	0	+	0.41	(0.408,0.44]	chr12	491795	15	INTRON	INTRON	TMPO	ENSG00000120802.14	ENST00000548911.1:ENST00000556029.6:ENST00000343315.9:ENST00000266732.8:ENST00000393053.6:ENST00000546828.6:ENST00000261210.9:ENST00000549938.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	79	2	2.17784	2.3158950000000003	2.45395	0.00916282	0.00366321	0.0855292	0.0535094
chr2	73006569	73006669	1155303	0	-	0.47	(0.44,0.476]	chr2	123468	46	INTRON	INTRON	SFXN5	ENSG00000144040.13	ENST00000272433.7:ENST00000461352.5:ENST00000474528.5:ENST00000411783.5:ENST00000410065.5:ENST00000463277.5:ENST00000416579.5:ENST00000464825.5:ENST00000450185.5:ENST00000442582.1:ENST00000487508.5:ENST00000497144.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	49	2	1.81283	2.3158950000000003	2.81896	0.0343005	0.0120766	0.135641	0.0962311
chr3	100709469	100709557	1467932	0	+	0.545455	(0.515,0.57]	chr3	153830	3	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	TFG	ENSG00000114354.15	ENST00000675047.1:ENST00000490574.6:ENST00000675543.1:ENST00000676308.1:ENST00000675499.1:ENST00000674699.1:ENST00000418917.7:ENST00000675553.1:ENST00000620299.5:ENST00000675246.1:ENST00000675692.1:ENST00000676276.1:ENST00000676054.1:ENST00000675890.1:ENST00000675011.1:ENST00000675586.1:ENST00000674645.1:ENST00000675958.1:ENST00000674798.1:ENST00000676010.1:ENST00000675591.1:ENST00000479672.6:ENST00000675420.1:ENST00000674615.1:ENST00000676431.1:ENST00000674758.1:ENST00000240851.9:ENST00000675243.1:ENST00000676111.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	78	2	2.09303	2.31574	2.53845	0.00632226	0.00230048	0.0687526	0.0439974
chr2	53915184	53915283	1119995	0	-	0.484848	(0.476,0.515]	chr2	119993	47	INTRON	INTRON	PSME4	ENSG00000068878.15	ENST00000404125.6:ENST00000389993.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	106	2	1.73456	2.315645	2.89673	0.0140928	3.48163e-4	0.0959618	0.0166215
chr19	15330735	15330835	7147388	0	-	0.36	(0.35,0.378]	chr19	721965	504	INTRON	INTRON	BRD4	ENSG00000141867.19	ENST00000679869.1:ENST00000360016.9:ENST00000594841.5:ENST00000597315.5:ENST00000601941.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	136	2	2.17024	2.3156350000000003	2.46103	0.00397513	7.11486e-4	0.0549214	0.0243015
chr15	40204786	40204886	6001701	0	+	0.47	(0.44,0.476]	chr15	570654	17	INTRON	INTRON	BUB1B	ENSG00000156970.13	ENST00000412359.7:ENST00000287598.11:ENST00000558972.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	40	2	2.29842	2.31557	2.33272	0.0552483	0.0129984	0.165463	0.0991656
chr21	9115580	9115680	7426495	0	-	0.25	[0,0.28]	chr21	757579	273	INTRON	INTRON	TEKT4P2	ENSG00000188681.12	ENST00000690061.1:ENST00000689141.1:ENST00000688310.1:ENST00000687537.1:ENST00000690096.1:ENST00000687888.1:ENST00000690389.1:ENST00000684989.1:ENST00000416067.6:ENST00000693307.1:ENST00000692383.1:ENST00000685666.1:ENST00000688451.1:ENST00000691190.1:ENST00000685532.1:ENST00000687488.1:ENST00000690713.1:ENST00000691834.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	10	150	2	1.43856	2.315515	3.19247	0.0304026	0.00107103	0.143385	0.0300793
chr2	15610071	15610169	703981	0	+	0.489796	(0.476,0.515]	chr2	81677	24	INTRON	INTRON	DDX1	ENSG00000079785.16	ENST00000381341.7:ENST00000677302.1:ENST00000434671.2:ENST00000676759.1:ENST00000478695.2:ENST00000678786.1:ENST00000678536.1:ENST00000679227.1:ENST00000678755.1:ENST00000676937.1:ENST00000676916.1:ENST00000617198.5:ENST00000233084.8:ENST00000677437.1:ENST00000678137.1:ENST00000678594.1:ENST00000459706.2:ENST00000677355.1:ENST00000470674.2:ENST00000676635.1:ENST00000677552.1:ENST00000621973.2:ENST00000678391.1:ENST00000677649.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	15	173	2	2.12132	2.3154500000000002	2.50958	6.83662e-4	6.52236e-4	0.0239468	0.0231639
chr17	82552950	82553050	6692937	0	+	0.54	(0.515,0.57]	chr17	654627	323	INTRON	INTRON	FOXK2	ENSG00000141568.21	ENST00000473637.6:ENST00000335255.10:ENST00000527313.6:ENST00000570585.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	64	2	2.05789	2.315435	2.57298	0.00786509	0.00506495	0.076155	0.0646039
chr6	161113755	161113851	3025754	0	+	0.322917	(0.32,0.35]	chr6	282464	6	INTRON	INTRON	MAP3K4	ENSG00000085511.20	ENST00000366919.6:ENST00000392142.9:ENST00000366920.6:ENST00000348824.11:ENST00000544041.5:ENST00000490904.6:ENST00000536852.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	55	2	1.83315	2.3151100000000002	2.79707	0.0313348	0.0170923	0.144381	0.104099
chr8	97703338	97703437	3809656	0	+	0.343434	(0.32,0.35]	chr8	352872	31	INTRON	INTRON	MTDH	ENSG00000147649.10	ENST00000336273.8:ENST00000519934.5:ENST00000519293.1:ENST00000521933.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	55	2	1.83315	2.3151100000000002	2.79707	0.0313348	0.0170923	0.144381	0.104099
chr3	14468087	14468149	1370065	0	+	0.5	(0.476,0.515]	chr3	144368	1	CDS	CDS:UTR3:EXON_MRNA:SS5_PROX:INTRON	SLC6A6	ENSG00000131389.18	ENST00000613060.4:ENST00000618278.4:ENST00000610642.4:ENST00000649500.1:ENST00000622186.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	60	2	1.52755	2.315095	3.10264	0.0355377	0.00543163	0.151404	0.0645052
chr16	90152747	90152846	6424403	0	+	0.343434	(0.32,0.35]	chr16	617209	149	INTRON	INTRON	FAM157C	ENSG00000260528.6	ENST00000568070.1	lncRNA	lncRNA	lncRNA	lncRNA	4	55	2	1.78201	2.315065	2.84812	0.0365003	0.0147575	0.153759	0.0983813
chr5	179622536	179622614	2779772	0	-	0.564103	(0.515,0.57]	chr5	262334	1	SS5_PROX	SS5_PROX:INTRON	HNRNPH1	ENSG00000169045.17	ENST00000329433.11:ENST00000393432.9:ENST00000356731.9:ENST00000442819.6:ENST00000514332.5:ENST00000510411.5:ENST00000510678.5:ENST00000514731.5:ENST00000503105.5:ENST00000504779.6:ENST00000508103.5:ENST00000506721.5:ENST00000523137.5:ENST00000505811.5:ENST00000510431.5:ENST00000519056.5:ENST00000504348.5:ENST00000513225.5:ENST00000524180.5:ENST00000513972.5:ENST00000519707.5:ENST00000519455.5:ENST00000515158.5:ENST00000521116.5:ENST00000505087.1:ENST00000515714.5:ENST00000512273.5:ENST00000503664.1:ENST00000630639.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	19	196	2	2.22649	2.315045	2.4036	3.77966e-4	1.20894e-4	0.0180523	0.0093979
chr2	169573288	169573386	1261699	0	-	0.428571	(0.408,0.44]	chr2	133689	4	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	FASTKD1	ENSG00000138399.18	ENST00000453153.7:ENST00000453929.6:ENST00000445210.1:ENST00000438035.5	protein_coding	protein_coding	protein_coding	protein_coding	8	101	2	2.09818	2.315035	2.53189	0.00772939	8.78846e-4	0.0757122	0.0269932
chr5	91383242	91383317	2674994	0	-	0.546667	(0.515,0.57]	chr5	253130	3	UTR5	UTR5:EXON_MRNA	ARRDC3	ENSG00000113369.9	ENST00000265138.4	protein_coding	protein_coding	protein_coding	protein_coding	11	115	2	2.29652	2.31495	2.33338	0.00157487	6.41714e-4	0.0361957	0.0228958
chr9	100319165	100319264	4308827	0	-	0.333333	(0.32,0.35]	chr9	395838	84	INTRON	INTRON	TEX10	ENSG00000136891.14	ENST00000535814.5:ENST00000374902.9	protein_coding	protein_coding	protein_coding	protein_coding	4	62	2	2.04237	2.31495	2.58753	0.0375542	0.00560122	0.140222	0.0678837
chr11	108190600	108190700	5034863	0	-	0.37	(0.35,0.378]	chr11	474442	1	SS3_PROX	SS3_PROX:INTRON	NPAT	ENSG00000149308.17	ENST00000278612.9:ENST00000610253.5:ENST00000531384.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	43	2	2.23043	2.3149100000000002	2.39939	0.0458078	0.0187487	0.149888	0.117523
chr12	123400794	123400893	5242748	0	+	0.373737	(0.35,0.378]	chr12	498205	40	INTRON	INTRON	KMT5A	ENSG00000183955.14	ENST00000402868.8:ENST00000437519.5:ENST00000461103.5:ENST00000437502.1:ENST00000485469.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	43	2	2.23043	2.3149100000000002	2.39939	0.0458078	0.0187487	0.149888	0.117523
chr3	155874878	155874977	1537169	0	+	0.363636	(0.35,0.378]	chr3	160082	36	INTRON	INTRON	GMPS	ENSG00000163655.16	ENST00000496455.7:ENST00000295920.7	protein_coding	protein_coding	protein_coding	protein_coding	3	43	2	2.23043	2.3149100000000002	2.39939	0.0458078	0.0187487	0.149888	0.117523
chr6	149750665	149750765	2996043	0	+	0.34	(0.32,0.35]	chr6	280341	4	SS5_PROX	SS5_PROX:INTRON	PCMT1	ENSG00000120265.19	ENST00000367384.7:ENST00000367378.6:ENST00000484601.6:ENST00000367380.9:ENST00000544496.5:ENST00000649295.1:ENST00000494411.6:ENST00000460828.6:ENST00000464889.7:ENST00000486585.2:ENST00000495487.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	46	2	2.25173	2.314835	2.37794	0.0498601	0.0180122	0.156383	0.114436
chr11	47543420	47543520	4950306	0	-	0.34	(0.32,0.35]	chr11	464246	188	INTRON	INTRON	CELF1	ENSG00000149187.19	ENST00000310513.10:ENST00000687097.1:ENST00000531165.5:ENST00000530151.5:ENST00000525841.5:ENST00000526419.1	protein_coding	protein_coding	protein_coding	protein_coding	6	95	2	2.02133	2.3148299999999997	2.60833	0.017146	0.00240033	0.111072	0.0440612
chr17	18307898	18307984	6738833	0	-	0.476744	(0.476,0.515]	chr17	661450	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TOP3A	ENSG00000177302.15	ENST00000321105.10:ENST00000542570.5:ENST00000584582.5:ENST00000582981.5:ENST00000580095.5:ENST00000461127.5:ENST00000584669.5:ENST00000583328.5:ENST00000472959.5:ENST00000585031.2:ENST00000582230.5:ENST00000584887.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	47	2	1.74317	2.3147349999999998	2.8863	0.0396373	0.0111679	0.161534	0.0877435
chr9	77920060	77920160	4270830	0	-	0.49	(0.476,0.515]	chr9	392874	1039	INTRON	INTRON	GNAQ	ENSG00000156052.11	ENST00000286548.9:ENST00000411677.1	protein_coding	protein_coding	protein_coding	protein_coding	4	47	2	1.74317	2.3147349999999998	2.8863	0.0396373	0.0111679	0.161534	0.0877435
chr21	39247100	39247200	7464858	0	-	0.46	(0.44,0.476]	chr21	760470	82	INTRON	INTRON	BRWD1	ENSG00000185658.14	ENST00000333229.6:ENST00000342449.8:ENST00000446924.5:ENST00000380800.7:ENST00000430093.5:ENST00000445245.5:ENST00000445668.5:ENST00000412604.1:ENST00000455867.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	65	2	1.61163	2.314725	3.01782	0.0598319	7.8136e-4	0.169278	0.0257169
chr5	119183626	119183726	2460922	0	+	0.52	(0.515,0.57]	chr5	235744	50	INTRON	INTRON	DMXL1	ENSG00000172869.15	ENST00000539542.6:ENST00000311085.8	protein_coding	protein_coding	protein_coding	protein_coding	5	55	2	2.11384	2.314725	2.51561	0.0118599	0.00635044	0.0899583	0.0723103
chr11	86061860	86061960	5014771	0	-	0.35	(0.32,0.35]	chr11	473022	299	INTRON	INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000630913.2:ENST00000528398.5:ENST00000356360.9:ENST00000534412.5:ENST00000531558.1:ENST00000531930.5:ENST00000532041.5:ENST00000525162.5:ENST00000528256.1:ENST00000528411.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	27	338	2	2.09465	2.314715	2.53478	5.71371e-4	2.36602e-4	0.0220865	0.0136195
chr15	75429387	75429487	6223847	0	-	0.43	(0.408,0.44]	chr15	594504	62	INTRON	INTRON	SIN3A	ENSG00000169375.16	ENST00000394947.8:ENST00000360439.8:ENST00000394949.8:ENST00000564778.5:ENST00000562776.5:ENST00000568431.5:ENST00000567289.5:ENST00000570115.5:ENST00000568309.5:ENST00000568190.1	protein_coding	protein_coding	protein_coding	protein_coding	5	64	2	2.22268	2.314645	2.40661	0.011475	0.00770925	0.0888882	0.0784002
chr10	5775241	5775341	4544533	0	-	0.45	(0.44,0.476]	chr10	419772	9	INTRON	INTRON	GDI2	ENSG00000057608.17	ENST00000380191.9:ENST00000447751.5:ENST00000380181.7:ENST00000456041.5	protein_coding	protein_coding	protein_coding	protein_coding	5	64	2	2.03034	2.31461	2.59888	0.0173569	0.00487719	0.104189	0.0640618
chr12	98595432	98595490	5199001	0	+	0.448276	(0.44,0.476]	chr12	491852	1	CDS	CDS:EXON_MRNA:SS3_PROX:INTRON	SLC25A3	ENSG00000075415.15	ENST00000401722.7:ENST00000188376.9:ENST00000551917.5:ENST00000546766.5:ENST00000228318.8:ENST00000552981.6:ENST00000547534.5:ENST00000550695.1:ENST00000551123.5:ENST00000549338.5:ENST00000548847.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	64	2	2.03034	2.31461	2.59888	0.0173569	0.00487719	0.104189	0.0640618
chr10	21609331	21609431	4405170	0	+	0.4	(0.378,0.408]	chr10	406466	135	INTRON	INTRON	MLLT10	ENSG00000078403.17	ENST00000651097.1:ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000650772.1:ENST00000651298.1:ENST00000495130.5:ENST00000377059.7:ENST00000652258.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	50	2	2.09402	2.3145249999999997	2.53503	0.0319942	0.0126438	0.13174	0.0982897
chr16	253432	253532	6271802	0	+	0.36	(0.35,0.378]	chr16	598392	2	SS3_PROX	SS3_PROX:INTRON	FAM234A	ENSG00000167930.17	ENST00000301679.7:ENST00000666018.1:ENST00000653392.1:ENST00000659283.1:ENST00000654053.1:ENST00000419173.5:ENST00000399932.8:ENST00000426695.5:ENST00000438220.5:ENST00000447499.1:ENST00000453430.5:ENST00000449945.5:ENST00000420046.5:ENST00000301678.7:ENST00000420500.5:ENST00000417499.1:ENST00000600536.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	43	2	1.90405	2.31451	2.72497	0.0482651	0.0198266	0.171852	0.109608
chr19	47364985	47365085	7085550	0	+	0.47	(0.44,0.476]	chr19	708987	19	INTRON	INTRON	DHX34	ENSG00000134815.19	ENST00000328771.9:ENST00000471451.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	41	2	2.13779	2.3144549999999997	2.49112	0.0315968	0.0264596	0.144381	0.122506
chr1	67414665	67414765	477468	0	-	0.34	(0.32,0.35]	chr1	57466	1	SS5_PROX	SS5_PROX:INTRON	SERBP1	ENSG00000142864.15	ENST00000370994.8:ENST00000361219.11:ENST00000370995.6:ENST00000370990.5:ENST00000493607.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	46	2	1.88468	2.314415	2.74415	0.0515071	0.0198267	0.176696	0.109608
chr11	87177588	87177688	4844212	0	+	0.35	(0.32,0.35]	chr11	451862	198	INTRON	INTRON	TMEM135	ENSG00000166575.17	ENST00000340353.11:ENST00000305494.6:ENST00000532959.5:ENST00000525018.5	protein_coding	protein_coding	protein_coding	protein_coding	3	46	2	1.88468	2.314415	2.74415	0.0515071	0.0198267	0.176696	0.109608
chr19	38660346	38660446	7065855	0	+	0.43	(0.408,0.44]	chr19	705486	117	INTRON	INTRON	ACTN4	ENSG00000130402.13	ENST00000252699.7:ENST00000588618.5:ENST00000440400.2:ENST00000424234.7:ENST00000589528.1:ENST00000390009.7:ENST00000495553.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	9	113	2	2.15238	2.314215	2.47605	0.00382586	0.00116417	0.0542786	0.0314524
chr3	52692209	52692290	1429255	0	+	0.444444	(0.44,0.476]	chr3	151007	2	INTRON	INTRON	GNL3	ENSG00000163938.17	ENST00000394799.6:ENST00000418458.6:ENST00000496254.5:ENST00000484022.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	56	2	1.60467	2.314165	3.02366	0.0411383	0.00603307	0.1451	0.0700813
chr3	23840489	23840588	1388075	0	+	0.434343	(0.408,0.44]	chr3	145385	286	INTRON	INTRON	UBE2E1	ENSG00000170142.12	ENST00000306627.8:ENST00000346855.7:ENST00000495141.5:ENST00000442670.5:ENST00000424381.5:ENST00000467766.5:ENST00000475680.5:ENST00000452012.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	74	2	1.84516	2.314025	2.78289	0.0193431	0.0022785	0.108861	0.0437013
chr21	37388199	37388299	7406436	0	+	0.5	(0.476,0.515]	chr21	754850	127	INTRON	INTRON	DYRK1A	ENSG00000157540.22	ENST00000646523.1:ENST00000647425.1:ENST00000647188.2:ENST00000647504.1:ENST00000644942.1:ENST00000338785.8:ENST00000643624.1:ENST00000643551.1:ENST00000426672.6:ENST00000398960.7	protein_coding	protein_coding	protein_coding	protein_coding	8	98	2	1.87849	2.313955	2.74942	0.00992862	9.59979e-4	0.0877296	0.0282401
chr4	6843903	6844003	1922202	0	+	0.43	(0.408,0.44]	chr4	193005	13	INTRON	INTRON	KIAA0232	ENSG00000170871.12	ENST00000307659.6:ENST00000425103.5	protein_coding	protein_coding	protein_coding	protein_coding	5	64	2	2.17784	2.313935	2.45003	0.00990006	0.00916282	0.0855292	0.0838372
chr1	180713393	180713493	270410	0	+	0.37	(0.35,0.378]	chr1	31620	306	INTRON	INTRON	XPR1	ENSG00000143324.14	ENST00000367590.9:ENST00000367589.3	protein_coding	protein_coding	protein_coding	protein_coding	4	57	2	2.1617	2.313905	2.46611	0.0771502	0.00297318	0.196285	0.0501309
chr21	10581694	10581794	7369849	0	+	0.36	(0.35,0.378]	chr21	752148	27	INTRON	INTRON	ENSG00000273840	ENSG00000273840.1	ENST00000612267.1	lncRNA	lncRNA	lncRNA	lncRNA	6	84	2	2.13131	2.31387	2.49643	0.00752974	0.00741515	0.0773151	0.0744307
chr17	22145465	22145565	6579118	0	+	0.45	(0.44,0.476]	chr17	639556	542	INTRON	INTRON	UBBP4	ENSG00000263563.7	ENST00000648259.1:ENST00000688301.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	13	157	2	2.24345	2.31386	2.38427	0.00250928	2.46584e-4	0.0446195	0.0139149
chr9	130771754	130771854	4214442	0	+	0.48	(0.476,0.515]	chr9	386427	569	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000393293.4	protein_coding	protein_coding	protein_coding	protein_coding	6	74	2	1.68907	2.3138300000000003	2.93859	0.0296007	0.00143107	0.142135	0.0340925
chr10	32920983	32921081	4592320	0	-	0.367347	(0.35,0.378]	chr10	423449	7	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	ITGB1	ENSG00000150093.20	ENST00000609742.3:ENST00000678989.1:ENST00000677363.1:ENST00000302278.8:ENST00000396033.6:ENST00000423113.5:ENST00000417122.7:ENST00000676895.1:ENST00000678120.1:ENST00000676623.1:ENST00000678952.1:ENST00000677999.1:ENST00000679187.1:ENST00000678479.1:ENST00000676964.1:ENST00000488494.6:ENST00000488427.2:ENST00000678591.1:ENST00000678943.1:ENST00000437302.6:ENST00000678701.1:ENST00000678766.1:ENST00000676659.1:ENST00000677310.1:ENST00000474568.6:ENST00000676460.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	52	2	2.02424	2.3138249999999996	2.60341	0.0275785	0.0164934	0.123904	0.110301
chrX	136870717	136870817	7897580	0	-	0.39	(0.378,0.408]	chrX	804142	3	SS3_PROX	SS3_PROX:INTRON	RBMX	ENSG00000147274.14	ENST00000561733.5:ENST00000431446.7:ENST00000496459.2:ENST00000568578.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	10	130	2	2.30388	2.313815	2.32375	0.00207021	0.00134834	0.0411801	0.0338207
chr9	37238305	37238405	4118840	0	+	0.35	(0.32,0.35]	chr9	375389	514	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000461038.5:ENST00000488607.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	114	2	1.35626	2.313775	3.27129	0.0414162	4.56534e-4	0.161578	0.0196892
chr12	46360135	46360233	5316561	0	-	0.408163	(0.378,0.408]	chr12	505763	21	UTR3	UTR3:EXON_MRNA	SLC38A2	ENSG00000134294.14	ENST00000256689.10:ENST00000549258.5:ENST00000551374.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	15	192	2	2.21495	2.313765	2.41258	6.83156e-4	5.39708e-4	0.0237957	0.0215026
chr12	76057061	76057158	5369935	0	-	0.474227	(0.44,0.476]	chr12	512288	5	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	NAP1L1	ENSG00000187109.15	ENST00000618691.5:ENST00000552056.5:ENST00000393263.7:ENST00000431879.7:ENST00000552147.5:ENST00000547773.5:ENST00000544816.5:ENST00000542344.5:ENST00000535020.6:ENST00000549596.5:ENST00000547993.5:ENST00000552342.5:ENST00000547529.6:ENST00000548044.5:ENST00000550934.5:ENST00000551992.5:ENST00000548273.5:ENST00000551600.5:ENST00000547704.5:ENST00000551524.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	54	2	1.65297	2.31374	2.97451	0.0331814	0.00853825	0.145918	0.0780043
chr19	5633345	5633445	7005399	0	+	0.46	(0.44,0.476]	chr19	694957	65	INTRON	INTRON	SAFB	ENSG00000160633.13	ENST00000589863.5:ENST00000588852.2:ENST00000591666.5:ENST00000292123.9:ENST00000592224.5:ENST00000586934.5:ENST00000454510.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	54	2	1.65297	2.31374	2.97451	0.0331814	0.00853825	0.145918	0.0780043
chr12	110286267	110286366	5226148	0	+	0.282828	(0.28,0.32]	chr12	495234	31	INTRON	INTRON	ATP2A2	ENSG00000174437.18	ENST00000552636.2:ENST00000308664.10:ENST00000539276.7:ENST00000377685.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	97	2	1.79956	2.313625	2.82769	0.0169391	0.00854778	0.103888	0.0836935
chr4	70937025	70937125	1970852	0	+	0.53	(0.515,0.57]	chr4	197571	341	INTRON	INTRON	MOB1B	ENSG00000173542.9	ENST00000502869.5:ENST00000509041.5:ENST00000309395.7:ENST00000396051.2:ENST00000511449.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	46	2	1.9459	2.3136099999999997	2.68132	0.0429089	0.00324198	0.148082	0.0524329
chr9	112312980	112313080	4317754	0	-	0.4	(0.378,0.408]	chr9	397079	147	INTRON	INTRON	PTBP3	ENSG00000119314.16	ENST00000334318.10:ENST00000458258.5:ENST00000374257.6:ENST00000374255.6:ENST00000343327.6:ENST00000487997.1:ENST00000210227.4:ENST00000450374.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	129	2	2.11608	2.3136	2.51112	0.00467795	5.0824e-4	0.0600108	0.0202333
chr1	29052803	29052903	60352	0	+	0.34	(0.32,0.35]	chr1	7706	3	SS3_PROX	SS3_PROX:INTRON	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000647918.1:ENST00000646800.1:ENST00000644342.1:ENST00000646189.1:ENST00000482464.6:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000646260.1:ENST00000373798.5:ENST00000644600.1:ENST00000649674.1:ENST00000643173.1:ENST00000343067.9:ENST00000644780.1:ENST00000650265.1:ENST00000648181.1:ENST00000643604.1:ENST00000648891.1:ENST00000373797.2:ENST00000349460.9:ENST00000645184.1:ENST00000645111.1:ENST00000643302.1:ENST00000645999.1:ENST00000642643.1:ENST00000636666.1:ENST00000644848.1:ENST00000644470.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	141	2	2.25069	2.31358	2.37647	0.00934678	4.86764e-4	0.0817766	0.0199652
chr16	1363987	1364085	6427451	0	-	0.520408	(0.515,0.57]	chr16	617784	9	UTR3	UTR3:EXON_MRNA	UNKL	ENSG00000059145.19	ENST00000389221.9:ENST00000248104.11:ENST00000403703.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	47	2	1.37301	2.313565	3.25412	0.0752392	0.00224554	0.193891	0.0435144
chr16	88949915	88950015	6541026	0	-	0.49	(0.476,0.515]	chr16	634104	82	INTRON	INTRON	CBFA2T3	ENSG00000129993.15	ENST00000268679.9:ENST00000563640.1:ENST00000570046.1	protein_coding	protein_coding	protein_coding	protein_coding	9	111	2	2.20678	2.313565	2.42035	0.00484957	8.0704e-4	0.0605773	0.0258804
chr2	26034708	26034735	713103	0	+	0.333333	(0.32,0.35]	chr2	82435	1	CDS	CDS:EXON_MRNA	RAB10	ENSG00000084733.11	ENST00000264710.5:ENST00000495146.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	91	2	1.8903	2.313545	2.73679	0.0298043	9.3145e-4	0.129138	0.0278746
chr5	135351151	135351249	2728428	0	-	0.387755	(0.378,0.408]	chr5	256802	3	EXON_LNCRNA	EXON_LNCRNA:SS3_PROX:INTRON	MACROH2A1	ENSG00000113648.17	ENST00000511689.6:ENST00000512507.5:ENST00000451949.6:ENST00000304332.8:ENST00000687629.1:ENST00000688649.1:ENST00000312469.8:ENST00000360597.8:ENST00000506671.5:ENST00000423969.6:ENST00000510038.1:ENST00000507868.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	41	2	2.23831	2.3135199999999996	2.38873	0.0458857	0.0179575	0.149888	0.114265
chr17	61781886	61781982	6808107	0	-	0.364583	(0.35,0.378]	chr17	672558	5	INTRON	INTRON	BRIP1	ENSG00000136492.10	ENST00000259008.7:ENST00000682755.1:ENST00000682453.1:ENST00000683039.1:ENST00000682989.1:ENST00000682589.1:ENST00000683235.1:ENST00000682477.1:ENST00000684584.1:ENST00000682073.1:ENST00000577598.5:ENST00000682066.1:ENST00000584322.2:ENST00000683381.1:ENST00000579028.2:ENST00000682611.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	32	2	2.30249	2.31346	2.32443	0.0544216	0.0519726	0.176696	0.164972
chr3	60252228	60252328	1712136	0	-	0.37	(0.35,0.378]	chr3	176138	1715	INTRON	INTRON	FHIT	ENSG00000189283.10	ENST00000492590.6:ENST00000476844.5:ENST00000468189.5:ENST00000488467.5	protein_coding	protein_coding	protein_coding	protein_coding	2	32	2	2.30249	2.31346	2.32443	0.0544216	0.0519726	0.176696	0.164972
chr6	125085236	125085336	2952719	0	+	0.37	(0.35,0.378]	chr6	277749	24	UTR3	UTR3:EXON_MRNA	RNF217	ENSG00000146373.17	ENST00000521654.7:ENST00000560949.5:ENST00000519565.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	32	2	2.30249	2.31346	2.32443	0.0544216	0.0519726	0.176696	0.164972
chrX	24747122	24747220	7632245	0	+	0.377551	(0.35,0.378]	chrX	781715	12	INTRON	INTRON	POLA1	ENSG00000101868.13	ENST00000672178.1:ENST00000379068.8:ENST00000379059.7:ENST00000611764.2:ENST00000480125.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	32	2	2.30249	2.31346	2.32443	0.0544216	0.0519726	0.176696	0.164972
chr16	16026013	16026113	6308526	0	+	0.39	(0.378,0.408]	chr16	603534	90	INTRON	INTRON	ABCC1	ENSG00000103222.20	ENST00000574224.2:ENST00000678422.1:ENST00000677164.1:ENST00000399408.7:ENST00000572882.3:ENST00000399410.8:ENST00000679043.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	49	2	1.78011	2.31337	2.84663	0.0356367	0.0133954	0.151629	0.0946278
chrX	151972660	151972753	7908620	0	-	0.290323	(0.28,0.32]	chrX	804816	1	INTRON	INTRON	GABRE	ENSG00000102287.19	ENST00000370328.4:ENST00000441219.5:ENST00000417300.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	32	462	2	1.86282	2.31336	2.7639	0.00107007	7.29874e-5	0.0300133	0.00767614
chr7	127669946	127670046	3402569	0	+	0.33	(0.32,0.35]	chr7	318063	171	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000463020.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	55	2	1.88255	2.31335	2.74415	0.0269187	0.0198267	0.135288	0.109608
chr17	13556842	13556942	6727130	0	-	0.4	(0.378,0.408]	chr17	660143	9	INTRON	INTRON	HS3ST3A1	ENSG00000153976.3	ENST00000284110.2	protein_coding	protein_coding	protein_coding	protein_coding	4	55	2	2.11194	2.3132900000000003	2.51464	0.0292534	0.00684341	0.128055	0.0748032
chr6	57111306	57111405	2878271	0	+	0.323232	(0.32,0.35]	chr6	273249	17	INTRON	INTRON	ZNF451	ENSG00000112200.17	ENST00000515290.5:ENST00000510483.5:ENST00000357489.7:ENST00000370702.5:ENST00000444273.6:ENST00000370711.9:ENST00000370706.9:ENST00000491832.6:ENST00000502749.1:ENST00000504603.1:ENST00000509071.5:ENST00000509251.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	159	2	2.23714	2.31325	2.38936	0.00333584	6.8675e-4	0.0512081	0.0238954
chr2	171530772	171530871	917409	0	+	0.383838	(0.378,0.408]	chr2	101030	71	INTRON	INTRON	CYBRD1	ENSG00000071967.12	ENST00000409484.5:ENST00000468308.1:ENST00000321348.9:ENST00000375252.3:ENST00000474182.1:ENST00000494587.1:ENST00000445146.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	55	2	2.16303	2.31324	2.46345	0.0252473	0.00827342	0.12011	0.0813266
chrX	53656325	53656425	7821605	0	-	0.49	(0.476,0.515]	chrX	798234	18	INTRON	INTRON	HUWE1	ENSG00000086758.16	ENST00000262854.11:ENST00000342160.7:ENST00000218328.12:ENST00000446750.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	87	2	2.31113	2.3132099999999998	2.31529	0.00614783	0.00258657	0.0676501	0.0469354
chr18	13045300	13045398	6877126	0	+	0.397959	(0.378,0.408]	chr18	681428	26	INTRON	INTRON	CEP192	ENSG00000101639.19	ENST00000325971.12:ENST00000506447.5:ENST00000589596.5:ENST00000513432.5:ENST00000511820.6:ENST00000510237.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	50	2	1.63458	2.3131399999999998	2.9917	0.0573057	0.0068789	0.167723	0.0749442
chr22	19493429	19493528	7476971	0	+	0.444444	(0.44,0.476]	chr22	762407	91	INTRON	INTRON	CDC45	ENSG00000093009.11	ENST00000407835.6:ENST00000437685.6:ENST00000483431.5:ENST00000438587.6:ENST00000672837.1:ENST00000263201.7:ENST00000404724.7:ENST00000487669.5:ENST00000428937.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	22	270	2	2.05009	2.31311	2.57613	6.40709e-4	7.51182e-5	0.0228915	0.00777227
chr20	32370304	32370401	7255943	0	+	0.402062	(0.378,0.408]	chr20	737066	8	INTRON	INTRON	ASXL1	ENSG00000171456.21	ENST00000651418.1:ENST00000375687.10:ENST00000613218.4:ENST00000646367.1:ENST00000644587.1:ENST00000620121.4:ENST00000645337.1:ENST00000649901.1:ENST00000646985.1:ENST00000645035.1:ENST00000497249.6:ENST00000643168.1:ENST00000375689.5:ENST00000306058.9:ENST00000555343.2:ENST00000645688.1:ENST00000642676.1:ENST00000470145.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	41	2	1.89621	2.3130699999999997	2.72993	0.0488044	0.0188736	0.173377	0.108861
chr15	63707924	63708023	6199612	0	-	0.20202	[0,0.28]	chr15	591306	7	INTRON	INTRON	HERC1	ENSG00000103657.14	ENST00000443617.7:ENST00000561400.1	protein_coding	protein_coding	protein_coding	protein_coding	5	93	2	2.28786	2.313055	2.33825	0.0195228	0.00782185	0.109483	0.0788675
chr8	31062414	31062512	3728221	0	+	0.479592	(0.476,0.515]	chr8	346535	28	INTRON	INTRON	WRN	ENSG00000165392.11	ENST00000650667.1:ENST00000298139.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	15	148	2	1.58352	2.3129850000000003	3.04245	0.00746975	2.24944e-4	0.0772645	0.013767
chr11	3363785	3363884	4893693	0	-	0.282828	(0.28,0.32]	chr11	458671	13	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	ZNF195	ENSG00000005801.18	ENST00000528796.5:ENST00000399602.9:ENST00000354599.10:ENST00000343338.11:ENST00000620374.4:ENST00000649622.1:ENST00000429541.6:ENST00000005082.13:ENST00000526601.5:ENST00000438262.6:ENST00000528410.5:ENST00000528218.5:ENST00000529789.5:ENST00000525313.6:ENST00000533036.5:ENST00000529228.5:ENST00000529678.5:ENST00000528636.1:ENST00000427810.6:ENST00000534569.5:ENST00000524857.5:ENST00000530643.5:ENST00000618467.4:ENST00000330692.11	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	37	2	2.29724	2.312975	2.32871	0.0581621	0.0554156	0.18407	0.167723
chr15	70078355	70078455	6215310	0	-	0.31	(0.28,0.32]	chr15	593115	18	INTRON	INTRON	TLE3	ENSG00000140332.18	ENST00000558939.5:ENST00000451782.7:ENST00000317509.12:ENST00000557919.5:ENST00000560525.6:ENST00000559929.5:ENST00000560589.5:ENST00000561453.5:ENST00000557997.5:ENST00000560939.5:ENST00000559048.5:ENST00000440567.7:ENST00000558201.5:ENST00000654081.1:ENST00000559191.5:ENST00000557907.5:ENST00000558379.5:ENST00000557984.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	37	2	2.29724	2.312975	2.32871	0.0581621	0.0554156	0.18407	0.167723
chr5	41941373	41941465	2344708	0	+	0.282609	(0.28,0.32]	chr5	226414	2	UTR3	UTR3:EXON_MRNA	FBXO4	ENSG00000151876.13	ENST00000281623.8:ENST00000509134.1:ENST00000505566.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	37	2	2.29724	2.312975	2.32871	0.0581621	0.0554156	0.18407	0.167723
chr6	15072746	15072846	3063663	0	-	0.3	(0.28,0.32]	chr6	284666	192	INTRON	INTRON	ENSG00000234261	ENSG00000234261.5	ENST00000653525.1:ENST00000656468.1:ENST00000656344.1:ENST00000437648.1:ENST00000656807.1	lncRNA	lncRNA	lncRNA	lncRNA	2	37	2	2.29724	2.312975	2.32871	0.0581621	0.0554156	0.18407	0.167723
chr19	19394910	19395009	7035237	0	+	0.545455	(0.515,0.57]	chr19	701429	84	INTRON	INTRON	GATAD2A	ENSG00000167491.18	ENST00000494516.6:ENST00000360315.7:ENST00000609040.5:ENST00000417582.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	48	2	1.63907	2.31292	2.98677	0.0350277	0.00632549	0.137535	0.0722266
chr10	74241339	74241439	4456672	0	+	0.42	(0.408,0.44]	chr10	411547	164	INTRON	INTRON	ADK	ENSG00000156110.15	ENST00000672429.1:ENST00000539909.6:ENST00000286621.7:ENST00000673352.1:ENST00000673310.1:ENST00000672920.1:ENST00000672394.1:ENST00000372734.5:ENST00000673027.1:ENST00000541550.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	40	2	1.88062	2.3129	2.74518	0.0534548	0.0152229	0.162935	0.108535
chr15	83040927	83041027	6249174	0	-	0.44	(0.408,0.44]	chr15	596398	102	INTRON	INTRON	BTBD1	ENSG00000064726.10	ENST00000261721.9:ENST00000379403.2:ENST00000559652.5:ENST00000560015.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	40	2	1.88062	2.3129	2.74518	0.0534548	0.0152229	0.162935	0.108535
chr15	34388052	34388152	6132759	0	-	0.36	(0.35,0.378]	chr15	584234	1	SS3_PROX	SS3_PROX:INTRON	GOLGA8A	ENSG00000175265.18	ENST00000359187.5:ENST00000473125.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	134	2	2.23128	2.31288	2.39448	0.00502483	5.99458e-4	0.0619721	0.0223262
chr1	24769800	24769899	46305	0	+	0.313131	(0.28,0.32]	chr1	5764	238	INTRON	INTRON	CLIC4	ENSG00000169504.15	ENST00000488683.1:ENST00000497755.1:ENST00000489758.1:ENST00000374379.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	93	2	1.96841	2.31287	2.65733	0.0124199	0.0061571	0.0973643	0.0676501
chrX	134780327	134780426	7893327	0	-	0.545455	(0.515,0.57]	chrX	803518	77	INTRON	INTRON	PABIR2	ENSG00000156504.17	ENST00000343004.10:ENST00000370790.5:ENST00000298090.10:ENST00000478384.5:ENST00000486347.5:ENST00000465128.3:ENST00000493333.5:ENST00000611027.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	82	2	1.49901	2.3128699999999998	3.12673	0.0243165	3.95089e-4	0.12011	0.0178567
chr12	53411829	53411927	5142681	0	+	0.326531	(0.32,0.35]	chr12	485306	7	UTR3	UTR3:EXON_MRNA	SP1	ENSG00000185591.10	ENST00000327443.9:ENST00000426431.2	protein_coding	protein_coding	protein_coding	protein_coding	5	64	2	1.88141	2.31278	2.74415	0.0198267	0.0161424	0.109608	0.109464
chr10	21621186	21621285	4405291	0	+	0.545455	(0.515,0.57]	chr10	406483	36	INTRON	INTRON	MLLT10	ENSG00000078403.17	ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000651298.1:ENST00000377059.7:ENST00000652258.1:ENST00000651382.1:ENST00000438473.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	41	2	1.49871	2.31267	3.12663	0.0770828	0.00374498	0.196285	0.0562234
chr19	38656251	38656350	7065814	0	+	0.515152	(0.476,0.515]	chr19	705486	76	INTRON	INTRON	ACTN4	ENSG00000130402.13	ENST00000252699.7:ENST00000588618.5:ENST00000440400.2:ENST00000424234.7:ENST00000589528.1:ENST00000390009.7:ENST00000495553.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	53	2	2.26034	2.31267	2.365	0.0166235	0.0128901	0.110511	0.0926667
chr2	69927958	69928058	805637	0	+	0.4	(0.378,0.408]	chr2	89920	58	INTRON	INTRON	MXD1	ENSG00000059728.11	ENST00000435990.5:ENST00000540449.5:ENST00000264444.7:ENST00000409442.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	63	2	1.67073	2.31266	2.95459	0.0219426	0.00957623	0.123836	0.0820838
chr5	10400185	10400283	2318124	0	+	0.285714	(0.28,0.32]	chr5	224668	25	INTRON	INTRON	MARCHF6	ENSG00000145495.16	ENST00000274140.10:ENST00000449913.6:ENST00000511802.5:ENST00000503788.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	145	2	1.73523	2.31265	2.89007	0.0234982	1.94598e-4	0.118716	0.0122121
chr11	108367105	108367205	4858608	0	+	0.51	(0.476,0.515]	chr11	453406	17	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ATM	ENSG00000149311.20	ENST00000675843.1:ENST00000683174.1:ENST00000452508.6:ENST00000278616.9:ENST00000683524.1:ENST00000684152.1:ENST00000682286.1:ENST00000682302.1:ENST00000684447.1:ENST00000638786.2:ENST00000684180.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	39	2	2.06491	2.31262	2.56033	0.0304733	0.0287634	0.143385	0.127066
chr4	1954436	1954536	1911428	0	+	0.49	(0.476,0.515]	chr4	191818	1	SS3_ADJ	SS3_ADJ:SS3_PROX:SS5_PROX:INTRON	NSD2	ENSG00000109685.19	ENST00000508803.6:ENST00000382891.9:ENST00000353275.9:ENST00000382892.6:ENST00000382895.7:ENST00000312087.10:ENST00000677559.1:ENST00000482415.6:ENST00000514329.5:ENST00000502425.5:ENST00000382888.3:ENST00000505643.5:ENST00000503207.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	39	2	2.06491	2.31262	2.56033	0.0304733	0.0287634	0.143385	0.127066
chr7	158813956	158814056	3689658	0	-	0.49	(0.476,0.515]	chr7	342421	145	INTRON	INTRON	ESYT2	ENSG00000117868.18	ENST00000251527.10:ENST00000275418.13:ENST00000652148.1:ENST00000483958.5:ENST00000497111.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	39	2	2.06491	2.31262	2.56033	0.0304733	0.0287634	0.143385	0.127066
chr6	20431322	20431422	2827742	0	+	0.56	(0.515,0.57]	chr6	265575	271	INTRON	INTRON	E2F3	ENSG00000112242.16	ENST00000346618.8:ENST00000535432.2	protein_coding	protein_coding	protein_coding	protein_coding	4	41	2	1.56681	2.3126	3.05839	0.064862	0.00485936	0.179394	0.0640618
chr1	162566548	162566648	238368	0	+	0.3	(0.28,0.32]	chr1	28703	2	SS5_PROX	SS5_PROX:INTRON	UAP1	ENSG00000117143.14	ENST00000367925.6:ENST00000367926.9	protein_coding	protein_coding	protein_coding	protein_coding	7	104	2	1.72809	2.312585	2.89708	0.0197186	0.00257346	0.120131	0.0451443
chr7	105016234	105016334	3374638	0	+	0.3	(0.28,0.32]	chr7	315854	13	INTRON	INTRON	KMT2E	ENSG00000005483.22	ENST00000622386.2:ENST00000257745.9:ENST00000334884.9:ENST00000311117.8:ENST00000478990.5:ENST00000480368.5:ENST00000495267.5:ENST00000476671.5:ENST00000667857.1:ENST00000474203.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	11	157	2	1.93676	2.312575	2.68839	0.00371213	0.00201131	0.0561984	0.04086
chr15	72758511	72758610	6220151	0	-	0.494949	(0.476,0.515]	chr15	593831	22	EXON_MRNA	EXON_MRNA:INTRON	ADPGK	ENSG00000159322.18	ENST00000456471.3:ENST00000311669.12:ENST00000569534.5:ENST00000567941.5:ENST00000562621.1:ENST00000563907.5:ENST00000569517.5:ENST00000567733.1:ENST00000565814.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	39	2	1.99341	2.312545	2.63168	0.037389	0.0237106	0.155878	0.118716
chr4	2001653	2001753	2095977	0	-	0.5	(0.476,0.515]	chr4	207403	92	INTRON	INTRON	NELFA	ENSG00000185049.16	ENST00000542778.5:ENST00000382882.9:ENST00000333877.8:ENST00000431323.6:ENST00000455762.5:ENST00000421397.5:ENST00000411649.3:ENST00000443203.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	39	2	1.99341	2.312545	2.63168	0.037389	0.0237106	0.155878	0.118716
chr3	48081076	48081176	1687422	0	-	0.56	(0.515,0.57]	chr3	172280	648	INTRON	INTRON	MAP4	ENSG00000047849.22	ENST00000395734.7:ENST00000426837.6:ENST00000360240.10:ENST00000423088.5:ENST00000439356.2:ENST00000468075.2	protein_coding	protein_coding	protein_coding	protein_coding	7	75	2	2.12882	2.31241	2.496	0.005888	0.00225531	0.0670089	0.0436331
chr7	107462523	107462623	3612010	0	-	0.38	(0.378,0.408]	chr7	336694	495	INTRON	INTRON	COG5	ENSG00000164597.15	ENST00000297135.9:ENST00000347053.8:ENST00000393603.7:ENST00000484237.5:ENST00000475638.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	116	2	2.20432	2.312395	2.42047	0.00529064	8.22744e-4	0.0636343	0.026206
chr5	146143766	146143860	2747004	0	-	0.478723	(0.476,0.515]	chr5	258817	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	LARS1	ENSG00000133706.19	ENST00000674174.1:ENST00000674170.1:ENST00000674479.1:ENST00000674309.1:ENST00000674218.1:ENST00000674467.1:ENST00000674290.1:ENST00000674447.1:ENST00000674270.1:ENST00000674383.1:ENST00000674191.1:ENST00000674158.1:ENST00000506231.6:ENST00000674471.1:ENST00000394434.7:ENST00000674398.1:ENST00000674277.1:ENST00000274562.13:ENST00000510191.5:ENST00000504323.6:ENST00000674310.1:ENST00000512412.2:ENST00000508667.5:ENST00000507095.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	47	2	1.86014	2.31237	2.7646	0.0277606	0.0162075	0.137011	0.101453
chr7	152671860	152671959	3681578	0	-	0.484848	(0.476,0.515]	chr7	341687	80	INTRON	INTRON	XRCC2	ENSG00000196584.3	ENST00000359321.2	protein_coding	protein_coding	protein_coding	protein_coding	4	47	2	1.86014	2.31237	2.7646	0.0277606	0.0162075	0.137011	0.101453
chr18	738245	738340	6939953	0	-	0.273684	[0,0.28]	chr18	686468	3	EXON_LNCRNA	EXON_LNCRNA:INTRON	YES1:ENSG00000264635	ENSG00000176105.14:ENSG00000264635.1	ENST00000584307.5:ENST00000314574.5:ENST00000577961.5:ENST00000581712.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	5	94	2	2.02891	2.3123050000000003	2.5957	0.0236076	0.00656974	0.118716	0.0736092
chr16	23495033	23495110	6464430	0	-	0.376623	(0.35,0.378]	chr16	623893	3	INTRON	INTRON	GGA2	ENSG00000103365.15	ENST00000309859.8:ENST00000567468.5:ENST00000570111.5:ENST00000568799.1:ENST00000563494.5:ENST00000569300.5:ENST00000569189.2:ENST00000563047.1:ENST00000562944.5:ENST00000562117.1:ENST00000566651.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	19	253	2	2.31014	2.31227	2.3144	5.69641e-4	2.45793e-4	0.0220524	0.0138815
chr3	177138238	177138338	1871853	0	-	0.47	(0.44,0.476]	chr3	187422	21	INTRON	INTRON	TBL1XR1	ENSG00000177565.18	ENST00000457928.7:ENST00000430069.5:ENST00000673974.1:ENST00000352800.10:ENST00000422442.6:ENST00000428970.5:ENST00000424913.5:ENST00000437738.5:ENST00000431421.5:ENST00000635794.1:ENST00000630796.2:ENST00000450267.5:ENST00000630833.2:ENST00000431674.5:ENST00000422066.5:ENST00000443315.5:ENST00000627825.2:ENST00000427349.5:ENST00000413084.5:ENST00000637137.1:ENST00000491623.2:ENST00000637544.1:ENST00000636187.1:ENST00000636912.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	53	2	2.02558	2.31223	2.59888	0.0363567	0.00487719	0.138959	0.0640618
chr11	83159073	83159171	4840813	0	+	0.367347	(0.35,0.378]	chr11	451494	3	INTRON	INTRON	PCF11	ENSG00000165494.12	ENST00000298281.8:ENST00000530660.5:ENST00000690938.1:ENST00000530304.5:ENST00000533018.1	protein_coding	protein_coding	protein_coding	protein_coding	10	137	2	1.87195	2.312215	2.75248	0.00738821	4.98395e-4	0.0769106	0.0206993
chr7	127359983	127360082	3633913	0	-	0.50505	(0.476,0.515]	chr7	337748	3	EXON_MRNA	EXON_MRNA:INTRON	ZNF800:ENSG00000280347	ENSG00000048405.11:ENSG00000280347.1	ENST00000485577.1:ENST00000624029.1	protein_coding	TEC	protein_coding:TEC	TEC:processed_transcript	4	47	2	1.68092	2.31221	2.9435	0.0474026	0.00929849	0.169265	0.0817766
chr19	55256654	55256753	7213786	0	-	0.40404	(0.378,0.408]	chr19	732806	10	INTRON	INTRON	PPP6R1	ENSG00000105063.19	ENST00000412770.7	protein_coding	protein_coding	protein_coding	protein_coding	3	44	2	2.26009	2.312185	2.36428	0.0441088	0.0188651	0.162255	0.108861
chr1	113083229	113083329	188194	0	+	0.5	(0.476,0.515]	chr1	20854	92	INTRON	INTRON	LRIG2	ENSG00000198799.12	ENST00000361127.6	protein_coding	protein_coding	protein_coding	protein_coding	6	73	2	2.21313	2.31217	2.41121	0.0110342	0.00401502	0.0873897	0.0578059
chr6	169657845	169657930	3266659	0	-	0.435294	(0.408,0.44]	chr6	303169	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	WDR27	ENSG00000184465.16	ENST00000448612.6:ENST00000648472.1:ENST00000423258.5:ENST00000647790.1:ENST00000546525.5:ENST00000441385.2:ENST00000467418.1:ENST00000647873.1:ENST00000649303.1:ENST00000647889.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	55	2	1.84301	2.312115	2.78122	0.0174311	0.015812	0.112689	0.101453
chr16	18786611	18786703	6456640	0	-	0.467391	(0.44,0.476]	chr16	622515	4	EXON_LNCRNA	EXON_LNCRNA:SS3_PROX:INTRON	RPS15A	ENSG00000134419.15	ENST00000322989.8:ENST00000572008.5:ENST00000563390.5:ENST00000574723.5:ENST00000576008.5:ENST00000562935.5:ENST00000569365.6:ENST00000576436.5:ENST00000575669.1:ENST00000565420.5:ENST00000569083.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	102	2	1.84291	2.3121	2.78129	0.00713609	0.00229634	0.0723634	0.0439319
chr16	89486839	89486939	6543565	0	-	0.45	(0.44,0.476]	chr16	634281	552	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	14	164	2	2.10597	2.3121	2.51823	8.99361e-4	6.77243e-4	0.0274652	0.0238226
chr10	42365313	42365413	4603429	0	-	0.39	(0.378,0.408]	chr10	424089	39	INTRON	INTRON	ENSG00000215146	ENSG00000215146.5	ENST00000609841.1:ENST00000650175.1:ENST00000609034.1:ENST00000609502.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	7	84	2	1.92269	2.31205	2.70141	0.00836891	0.00411614	0.0822143	0.0564981
chr7	73493818	73493918	3554812	0	-	0.37	(0.35,0.378]	chr7	330795	5	INTRON	INTRON	BAZ1B	ENSG00000009954.11	ENST00000339594.9:ENST00000404251.1	protein_coding	protein_coding	protein_coding	protein_coding	8	98	2	2.02753	2.3120450000000003	2.59656	0.00638551	0.00372465	0.0693551	0.0561984
chrX	123704200	123704298	7878768	0	-	0.285714	(0.28,0.32]	chrX	802582	3	INTRON	INTRON	THOC2	ENSG00000125676.20	ENST00000245838.13:ENST00000355725.8:ENST00000433883.1:ENST00000419789.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	50	2	1.76293	2.31203	2.86113	0.0766478	0.0122675	0.196164	0.0969406
chr4	126731931	126732031	2238030	0	-	0.48	(0.476,0.515]	chr4	219029	333	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	3	41	2	2.13854	2.312025	2.48551	0.0776563	0.00756632	0.196285	0.0773151
chr2	15609875	15609973	703979	0	+	0.316327	(0.28,0.32]	chr2	81677	22	INTRON	INTRON	DDX1	ENSG00000079785.16	ENST00000381341.7:ENST00000677302.1:ENST00000434671.2:ENST00000676759.1:ENST00000478695.2:ENST00000678786.1:ENST00000678536.1:ENST00000679227.1:ENST00000678755.1:ENST00000676937.1:ENST00000676916.1:ENST00000617198.5:ENST00000233084.8:ENST00000677437.1:ENST00000678137.1:ENST00000678594.1:ENST00000459706.2:ENST00000677355.1:ENST00000470674.2:ENST00000676635.1:ENST00000677552.1:ENST00000621973.2:ENST00000678391.1:ENST00000677649.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	125	2	2.26355	2.31202	2.36049	0.00700135	0.00229405	0.0718189	0.0439319
chr3	196922913	196923013	1596999	0	+	0.47	(0.44,0.476]	chr3	165426	1	SS3_PROX	SS3_PROX:INTRON	SENP5	ENSG00000119231.11	ENST00000445299.6:ENST00000323460.10:ENST00000419026.5	protein_coding	protein_coding	protein_coding	protein_coding	4	53	2	2.29126	2.3119899999999998	2.33272	0.0165638	0.0129984	0.102621	0.0991656
chr8	51823285	51823383	3945825	0	-	0.469388	(0.44,0.476]	chr8	361993	22	INTRON	INTRON	PCMTD1	ENSG00000168300.14	ENST00000544451.2:ENST00000360540.9:ENST00000522514.6:ENST00000519559.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	53	2	2.29126	2.3119899999999998	2.33272	0.0165638	0.0129984	0.102621	0.0991656
chr18	9956968	9957066	6873783	0	+	0.265306	[0,0.28]	chr18	680907	29	UTR3	UTR3:EXON_MRNA	VAPA	ENSG00000101558.14	ENST00000400000.7	protein_coding	protein_coding	protein_coding	protein_coding	10	170	2	1.64421	2.31195	2.97969	0.0234309	4.25217e-4	0.11861	0.018441
chr13	95278798	95278898	5639653	0	-	0.24	[0,0.28]	chr13	537181	90	INTRON	INTRON	ABCC4	ENSG00000125257.16	ENST00000645237.2:ENST00000643051.1:ENST00000643842.1:ENST00000646439.1:ENST00000643816.1:ENST00000536256.3:ENST00000643556.1:ENST00000629385.1:ENST00000642524.1:ENST00000645532.1:ENST00000644471.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	77	2	2.09899	2.31194	2.52489	0.0371453	0.0084136	0.139304	0.082518
chr3	150412802	150412901	1533469	0	+	0.353535	(0.35,0.378]	chr3	159801	11	INTRON	INTRON	TSC22D2	ENSG00000196428.13	ENST00000361875.8:ENST00000688009.1:ENST00000480589.1:ENST00000466814.1:ENST00000485421.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	106	2	1.6599	2.311925	2.96395	0.0545616	9.23639e-5	0.165292	0.0080362
chr2	20343925	20344024	1076718	0	-	0.333333	(0.32,0.35]	chr2	115047	105	INTRON	INTRON	PUM2	ENSG00000055917.16	ENST00000361078.7:ENST00000442400.5:ENST00000420234.5:ENST00000429419.6:ENST00000432105.5:ENST00000446940.5:ENST00000424110.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	103	2	2.19151	2.3119050000000003	2.4323	0.0114722	0.00168279	0.0888882	0.0381547
chr6	13708244	13708343	3059191	0	-	0.515152	(0.476,0.515]	chr6	284548	110	INTRON	INTRON	RANBP9	ENSG00000010017.13	ENST00000011619.6	protein_coding	protein_coding	protein_coding	protein_coding	9	95	2	1.78305	2.311865	2.84068	0.00766879	0.00217133	0.0780566	0.0417893
chr1	89537453	89537552	157526	0	+	0.414141	(0.408,0.44]	chr1	17165	101	INTRON	INTRON	LRRC8B	ENSG00000197147.15	ENST00000330947.7:ENST00000439853.6:ENST00000449440.5:ENST00000640258.1:ENST00000639264.1	protein_coding	protein_coding	protein_coding	protein_coding	11	136	2	1.96803	2.31185	2.65567	0.00573171	2.17278e-4	0.0657377	0.0129235
chr1	1563338	1563437	360207	0	-	0.484848	(0.476,0.515]	chr1	41848	26	UTR3	UTR3:EXON_MRNA:INTRON	SSU72	ENSG00000160075.12	ENST00000291386.4:ENST00000378725.3:ENST00000359060.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	11	131	2	1.95123	2.31183	2.67243	0.00437962	4.26065e-4	0.0585064	0.0184573
chr12	50148271	50148371	5322981	0	-	0.52	(0.515,0.57]	chr12	507511	4	SS5_PROX	SS5_PROX:INTRON	CERS5	ENSG00000139624.14	ENST00000317551.12:ENST00000422340.6:ENST00000551697.5:ENST00000380189.8:ENST00000547787.5:ENST00000438450.6:ENST00000542320.5:ENST00000547800.2:ENST00000549389.5:ENST00000550258.5:ENST00000547455.5:ENST00000546514.1:ENST00000549942.1:ENST00000550899.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	34	2	1.86007	2.3118049999999997	2.76354	0.0526611	0.0147344	0.178401	0.0983813
chr17	44150560	44150660	6615558	0	+	0.56	(0.515,0.57]	chr17	645087	2	SS3_PROX	SS3_PROX:INTRON	HROB	ENSG00000125319.15	ENST00000319977.8:ENST00000585683.6:ENST00000245382.6:ENST00000588434.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	34	2	1.86007	2.3118049999999997	2.76354	0.0526611	0.0147344	0.178401	0.0983813
chr2	96338915	96339014	830232	0	+	0.525253	(0.515,0.57]	chr2	92795	27	INTRON	INTRON	NCAPH	ENSG00000121152.10	ENST00000240423.9:ENST00000427946.5:ENST00000435975.5:ENST00000477409.1:ENST00000456906.5:ENST00000455200.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	34	2	1.86007	2.3118049999999997	2.76354	0.0526611	0.0147344	0.178401	0.0983813
chr9	130751254	130751354	4214237	0	+	0.52	(0.515,0.57]	chr9	386427	364	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000393293.4	protein_coding	protein_coding	protein_coding	protein_coding	15	158	2	2.29016	2.31177	2.33338	6.41714e-4	3.39487e-4	0.0228958	0.0170719
chr22	20060573	20060673	7478148	0	+	0.43	(0.408,0.44]	chr22	762668	42	INTRON	INTRON	TANGO2	ENSG00000183597.16	ENST00000401886.5:ENST00000420290.6:ENST00000432883.5:ENST00000434570.6:ENST00000447208.6:ENST00000456048.5:ENST00000411907.5:ENST00000398042.6:ENST00000399807.7:ENST00000450664.5:ENST00000450019.5:ENST00000327374.9:ENST00000430807.5:ENST00000401833.5:ENST00000434168.5:ENST00000444651.5:ENST00000462579.5:ENST00000485715.2:ENST00000490583.5:ENST00000490121.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	77	2	2.19524	2.31166	2.42808	0.00990486	0.00331055	0.0838372	0.0527031
chrX	154741473	154741573	7915224	0	-	0.54	(0.515,0.57]	chrX	806107	248	INTRON	INTRON	GAB3	ENSG00000160219.12	ENST00000496390.5:ENST00000424127.3:ENST00000369575.7:ENST00000369568.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	34	2	1.79136	2.31162	2.83188	0.0638444	0.0108207	0.177811	0.0920575
chr14	103136864	103136960	5825463	0	+	0.447917	(0.44,0.476]	chr14	552715	10	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TNFAIP2	ENSG00000185215.11	ENST00000333007.8:ENST00000560869.6:ENST00000561217.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	48	2	1.66462	2.31161	2.9586	0.0520247	0.00758318	0.159508	0.0773151
chr19	11818873	11818973	7018948	0	+	0.34	(0.32,0.35]	chr19	697799	13	INTRON	INTRON	ZNF440	ENSG00000171295.13	ENST00000304060.10:ENST00000457526.1:ENST00000427505.5:ENST00000588954.5	protein_coding	protein_coding	protein_coding	protein_coding	3	48	2	2.1362	2.311565	2.48693	0.0338094	0.0291083	0.146709	0.128029
chr3	25737053	25737146	1642366	0	-	0.333333	(0.32,0.35]	chr3	168640	8	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	NGLY1	ENSG00000151092.18	ENST00000280700.10:ENST00000428257.5:ENST00000675217.1:ENST00000676225.1:ENST00000493324.5:ENST00000396649.7:ENST00000675178.1:ENST00000675680.1:ENST00000308710.9:ENST00000280699.13:ENST00000674841.1:ENST00000675234.1:ENST00000463611.2:ENST00000417874.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	48	2	2.1362	2.311565	2.48693	0.0338094	0.0291083	0.146709	0.128029
chr22	20614923	20615022	7557666	0	-	0.40404	(0.378,0.408]	chr22	772876	8	INTRON	INTRON	SMPD4P1	ENSG00000223553.6	ENST00000416717.6	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	4	55	2	2.05897	2.311525	2.56408	0.0339294	0.00566993	0.134508	0.0678837
chrX	41090604	41090704	7644113	0	+	0.38	(0.378,0.408]	chrX	782230	41	INTRON	INTRON	USP9X	ENSG00000124486.14	ENST00000324545.9:ENST00000378308.7	protein_coding	protein_coding	protein_coding	protein_coding	5	66	2	2.22859	2.311515	2.39444	0.0122858	0.00763308	0.091087	0.0777238
chr7	149241941	149242040	3445672	0	+	0.333333	(0.32,0.35]	chr7	321412	15	INTRON	INTRON	ZNF212	ENSG00000170260.9	ENST00000335870.7:ENST00000486371.1:ENST00000462724.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	46	2	1.77704	2.311365	2.84569	0.0719969	0.0121137	0.187322	0.0962599
chr1	155846997	155847097	564348	0	-	0.31	(0.28,0.32]	chr1	67384	137	INTRON	INTRON	GON4L	ENSG00000116580.20	ENST00000368331.6:ENST00000615926.4:ENST00000437809.5:ENST00000271883.9:ENST00000361040.9:ENST00000622608.2:ENST00000471341.5:ENST00000468867.1:ENST00000488251.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	71	2	1.54521	2.311325	3.07744	0.0548272	0.00604536	0.165463	0.0700813
chr2	175124218	175124317	1271895	0	-	0.262626	[0,0.28]	chr2	134444	23	INTRON	INTRON	ATF2	ENSG00000115966.18	ENST00000345739.9:ENST00000426833.7:ENST00000264110.7:ENST00000409437.5:ENST00000409635.5:ENST00000435004.6:ENST00000428760.5:ENST00000392544.5:ENST00000417080.5:ENST00000456655.5:ENST00000421438.5:ENST00000429579.5:ENST00000415955.5:ENST00000409499.5:ENST00000435231.6:ENST00000437522.5:ENST00000409833.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	91	2	1.8887	2.31127	2.73384	0.0246308	0.0123003	0.12011	0.0971033
chr1	27448817	27448917	406351	0	-	0.38	(0.378,0.408]	chr1	48986	195	INTRON	INTRON	WASF2	ENSG00000158195.11	ENST00000618852.5:ENST00000536657.1	protein_coding	protein_coding	protein_coding	protein_coding	4	49	2	1.89251	2.31122	2.72993	0.0251428	0.0188736	0.133404	0.108861
chr5	146219403	146219503	2514273	0	+	0.38	(0.378,0.408]	chr5	240157	3	SS5_PROX	SS5_PROX:INTRON	ENSG00000275740:RBM27	ENSG00000275740.1:ENSG00000091009.8	ENST00000506502.2:ENST00000265271.7	protein_coding	protein_coding	protein_coding	protein_coding	4	49	2	1.89251	2.31122	2.72993	0.0251428	0.0188736	0.133404	0.108861
chr6	31539774	31539821	3078820	0	-	0.382979	(0.378,0.408]	chr6	286762	1	INTRON	INTRON	DDX39B	ENSG00000198563.14	ENST00000458640.5:ENST00000462256.5:ENST00000376177.6:ENST00000396172.6:ENST00000482195.5:ENST00000431908.5:ENST00000481456.1:ENST00000427214.5:ENST00000428098.5:ENST00000419338.5:ENST00000456662.5:ENST00000428450.5:ENST00000449757.5:ENST00000456976.5:ENST00000418897.5:ENST00000419020.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	43	2	2.16303	2.311175	2.45932	0.0346754	0.0252473	0.148144	0.12011
chr4	48850582	48850672	1958417	0	+	0.555556	(0.515,0.57]	chr4	196245	1	INTRON	INTRON	OCIAD1	ENSG00000109180.15	ENST00000509122.5:ENST00000505922.6:ENST00000512981.5:ENST00000396448.6:ENST00000512236.5:ENST00000381473.7:ENST00000511102.5:ENST00000264312.12:ENST00000444354.6:ENST00000509246.5:ENST00000506801.5:ENST00000503016.5:ENST00000510824.5:ENST00000425583.6:ENST00000508293.5:ENST00000513391.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	55	2	1.94493	2.31113	2.67733	0.0204583	0.00366712	0.122204	0.0535094
chr3	119499342	119499442	1485388	0	+	0.49	(0.476,0.515]	chr3	155155	4	SS5_PROX	SS5_PROX:INTRON	TIMMDC1	ENSG00000113845.10	ENST00000494664.6:ENST00000493694.1:ENST00000264244.7:ENST00000486418.5:ENST00000492164.5:ENST00000466984.1:ENST00000463927.6:ENST00000498399.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	91	2	2.20789	2.31107	2.41425	0.00820497	0.00197914	0.081115	0.0404068
chrX	24022622	24022722	7775366	0	-	0.3	(0.28,0.32]	chrX	794796	156	INTRON	INTRON	KLHL15	ENSG00000174010.10	ENST00000685367.1:ENST00000689334.1:ENST00000328046.8:ENST00000693269.1:ENST00000692681.1:ENST00000684871.1	protein_coding	protein_coding	protein_coding	protein_coding	4	72	2	1.96475	2.31104	2.65733	0.0428385	0.0061571	0.162255	0.0676501
chr7	75376299	75376398	3337832	0	+	0.383838	(0.378,0.408]	chr7	310752	88	INTRON	INTRON	STAG3L1	ENSG00000205583.14	ENST00000619870.4:ENST00000404291.3	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	4	49	2	1.72045	2.311035	2.90162	0.0424671	0.0113157	0.161763	0.0886121
chr3	177162681	177162780	1872099	0	-	0.313131	(0.28,0.32]	chr3	187428	13	INTRON	INTRON	TBL1XR1	ENSG00000177565.18	ENST00000457928.7:ENST00000430069.5:ENST00000673974.1:ENST00000352800.10:ENST00000422442.6:ENST00000428970.5:ENST00000424913.5:ENST00000437738.5:ENST00000431421.5:ENST00000635794.1:ENST00000630796.2:ENST00000450267.5:ENST00000630833.2:ENST00000431674.5:ENST00000422066.5:ENST00000443315.5:ENST00000627825.2:ENST00000427349.5:ENST00000413084.5:ENST00000637137.1:ENST00000491623.2:ENST00000637544.1:ENST00000636187.1:ENST00000636912.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	93	2	2.15001	2.31102	2.47203	0.0114089	0.00621783	0.0886611	0.0717536
chr15	78441079	78441178	6067512	0	+	0.262626	[0,0.28]	chr15	577920	8	INTRON	INTRON	IREB2	ENSG00000136381.13	ENST00000560840.5:ENST00000559215.5:ENST00000258886.13:ENST00000558525.5:ENST00000560440.5:ENST00000558570.5:ENST00000560454.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	42	2	2.29142	2.310985	2.33055	0.062338	0.0592143	0.189982	0.175343
chr5	103183907	103183995	2440700	0	+	0.238636	[0,0.28]	chr5	234316	1	INTRON	INTRON	PPIP5K2	ENSG00000145725.20	ENST00000321521.13:ENST00000358359.8:ENST00000613674.4:ENST00000414217.5:ENST00000627916.2:ENST00000509597.5:ENST00000511724.1:ENST00000613907.4:ENST00000511022.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	42	2	2.29142	2.310985	2.33055	0.062338	0.0592143	0.189982	0.175343
chr22	20936440	20936539	7480708	0	+	0.474747	(0.44,0.476]	chr22	763096	18	INTRON	INTRON	CRKL	ENSG00000099942.13	ENST00000354336.8:ENST00000411769.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	54	2	1.70242	2.31096	2.9195	0.0282713	0.0102021	0.137721	0.0850389
chr4	67656383	67656483	2154005	0	-	0.33	(0.32,0.35]	chr4	212133	68	INTRON	INTRON	UBA6	ENSG00000033178.13	ENST00000322244.10	protein_coding	protein_coding	protein_coding	protein_coding	6	85	2	2.05666	2.31093	2.5652	0.00840213	0.00765724	0.0824581	0.075364
chr14	31025603	31025703	5857866	0	-	0.69	(0.57,1]	chr14	556513	3	SS5_PROX	SS5_PROX:INTRON	STRN3	ENSG00000196792.12	ENST00000355683.9:ENST00000357479.10:ENST00000555358.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	46	2	1.69018	2.3108400000000002	2.9315	0.0143258	9.1984e-4	0.104177	0.0278396
chr8	23022084	23022181	3923463	0	-	0.494845	(0.476,0.515]	chr8	359060	21	UTR3	UTR3:EXON_MRNA	TNFRSF10B	ENSG00000120889.13	ENST00000276431.9:ENST00000523752.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	11	86	2	1.28749	2.310825	3.33416	0.0326659	0.00230489	0.145164	0.0428247
chr2	61534334	61534422	1131193	0	-	0.375	(0.35,0.378]	chr2	121644	2	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	XPO1	ENSG00000082898.19	ENST00000676553.1:ENST00000677556.1:ENST00000677814.1:ENST00000676771.1:ENST00000677803.1:ENST00000677239.1:ENST00000678790.1:ENST00000677928.1:ENST00000678182.1:ENST00000677150.1:ENST00000678172.1:ENST00000678360.1:ENST00000678081.1:ENST00000676889.1:ENST00000676783.1:ENST00000679035.1:ENST00000677422.1:ENST00000677417.1:ENST00000677813.1:ENST00000676999.1:ENST00000676667.1:ENST00000678263.1:ENST00000678877.1:ENST00000401558.7:ENST00000428210.5:ENST00000677290.1:ENST00000677850.1:ENST00000451765.6:ENST00000676789.1:ENST00000678741.1:ENST00000404992.6:ENST00000406957.5:ENST00000443240.5:ENST00000420673.6:ENST00000481214.1:ENST00000449444.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	14	180	2	2.14071	2.31081	2.48091	9.95409e-4	8.34726e-4	0.0288906	0.0263691
chr5	55339112	55339211	2355403	0	+	0.323232	(0.32,0.35]	chr5	227152	99	INTRON	INTRON	MTREX	ENSG00000039123.16	ENST00000230640.10:ENST00000506750.5:ENST00000504997.1:ENST00000505565.5:ENST00000502953.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	63	2	1.72405	2.31074	2.89743	0.0275418	0.0127608	0.137011	0.0926667
chr20	49140118	49140218	7351890	0	-	0.38	(0.378,0.408]	chr20	749652	38	INTRON	INTRON	STAU1	ENSG00000124214.21	ENST00000371856.7:ENST00000371828.7:ENST00000340954.11:ENST00000347458.9:ENST00000360426.8:ENST00000371792.5:ENST00000371802.5:ENST00000437404.2	protein_coding	protein_coding	protein_coding	protein_coding	6	78	2	2.21238	2.310705	2.40903	0.0218124	0.00165739	0.11491	0.0376447
chrX	131738401	131738501	7892060	0	-	0.35	(0.32,0.35]	chrX	803396	263	INTRON	INTRON	FIRRE	ENSG00000213468.7	ENST00000649541.1:ENST00000662867.1:ENST00000663405.1:ENST00000665076.1:ENST00000637577.2:ENST00000654978.1:ENST00000647966.1:ENST00000649391.1:ENST00000648028.2:ENST00000427391.2	lncRNA	lncRNA	lncRNA	lncRNA	3	50	2	2.30731	2.31068	2.31405	0.0517107	0.0176772	0.176696	0.10525
chr7	105280349	105280449	3602816	0	-	0.42	(0.408,0.44]	chr7	336144	111	INTRON	INTRON	SRPK2	ENSG00000135250.17	ENST00000393651.8:ENST00000489828.5:ENST00000482897.5:ENST00000460391.5:ENST00000462282.5:ENST00000465112.5:ENST00000482862.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	73	2	2.00961	2.3106549999999997	2.6117	0.00931007	0.00555224	0.0855292	0.0648867
chrX	123967397	123967497	7716809	0	+	0.51	(0.476,0.515]	chrX	789462	36	INTRON	INTRON	STAG2	ENSG00000101972.20	ENST00000394477.5:ENST00000218089.13:ENST00000455404.5:ENST00000483575.5:ENST00000687810.1:ENST00000687071.1:ENST00000469481.1:ENST00000458700.5:ENST00000371160.5:ENST00000435103.5:ENST00000687852.1:ENST00000371145.8:ENST00000692982.1:ENST00000371157.7:ENST00000691035.1:ENST00000686802.1:ENST00000691383.1:ENST00000686127.1:ENST00000371144.7:ENST00000458176.5:ENST00000466748.5:ENST00000471107.1:ENST00000428941.5:ENST00000435215.5:ENST00000394478.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	48	2	1.7425	2.310645	2.87879	0.0417334	0.00999149	0.147007	0.0879541
chr2	31924432	31924531	1090253	0	-	0.323232	(0.32,0.35]	chr2	116896	3	INTRON	INTRON	MEMO1:DPY30	ENSG00000162959.14:ENSG00000162961.14	ENST00000295065.9:ENST00000446765.5:ENST00000404530.6:ENST00000379383.7:ENST00000490459.5:ENST00000426310.6:ENST00000422936.5:ENST00000413686.1:ENST00000407893.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	63	2	1.83416	2.31061	2.78706	0.0631198	0.00253645	0.176946	0.0465056
chr2	172573217	172573317	920078	0	+	0.35	(0.32,0.35]	chr2	101374	20	INTRON	INTRON	PDK1	ENSG00000152256.14	ENST00000392571.6:ENST00000410055.5:ENST00000282077.8:ENST00000466437.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	63	2	1.83416	2.31061	2.78706	0.0631198	0.00253645	0.176946	0.0465056
chr2	167917145	167917244	1258974	0	-	0.575758	(0.57,1]	chr2	133340	160	INTRON	INTRON	B3GALT1-AS1	ENSG00000235335.3	ENST00000430546.2:ENST00000657553.1:ENST00000670221.1:ENST00000436982.2	lncRNA	lncRNA	lncRNA	lncRNA	4	28	2	2.23711	2.31051	2.38391	0.0172108	0.0104374	0.104099	0.0902296
chr17	68037795	68037895	6669361	0	+	0.51	(0.476,0.515]	chr17	650743	3	SS5_PROX	SS5_PROX:INTRON	KPNA2	ENSG00000182481.10	ENST00000676857.1:ENST00000676594.1:ENST00000677827.1:ENST00000676622.1:ENST00000678054.1:ENST00000583269.5:ENST00000678388.1:ENST00000677918.1:ENST00000676902.1:ENST00000677419.1:ENST00000679346.1:ENST00000677223.1:ENST00000677695.1:ENST00000679078.1:ENST00000330459.8:ENST00000584026.6:ENST00000537025.6:ENST00000677086.1:ENST00000579754.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	13	135	2	1.57856	2.310505	3.04245	0.0101184	2.24944e-4	0.0887371	0.013767
chr4	67662765	67662858	2154071	0	-	0.258065	[0,0.28]	chr4	212139	4	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	UBA6	ENSG00000033178.13	ENST00000322244.10:ENST00000420827.2:ENST00000429659.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	11	202	2	2.01765	2.310485	2.60332	0.0107776	3.60594e-4	0.086841	0.0169432
chr9	112492914	112493014	4185849	0	+	0.42	(0.408,0.44]	chr9	381813	54	INTRON	INTRON	KIAA1958	ENSG00000165185.15	ENST00000337530.11:ENST00000536272.5:ENST00000374244.3	protein_coding	protein_coding	protein_coding	protein_coding	8	98	2	1.76523	2.310475	2.85572	0.0174785	4.26582e-4	0.10482	0.0184578
chr9	78001322	78001422	4271643	0	-	0.53	(0.515,0.57]	chr9	392880	786	INTRON	INTRON	GNAQ	ENSG00000156052.11	ENST00000286548.9:ENST00000411677.1	protein_coding	protein_coding	protein_coding	protein_coding	7	75	2	2.07721	2.3104649999999998	2.54372	0.0067022	0.00205444	0.0738715	0.0409693
chr10	101788418	101788517	4680659	0	-	0.434343	(0.408,0.44]	chr10	431944	5	INTRON	INTRON	OGA	ENSG00000198408.14	ENST00000439817.5:ENST00000361464.8:ENST00000357797.9:ENST00000482611.5:ENST00000494347.5:ENST00000479811.5:ENST00000461645.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	47	559	2	2.24115	2.310415	2.37968	1.45335e-4	1.33812e-5	0.0110154	0.00272203
chr6	17657483	17657582	3065708	0	-	0.484848	(0.476,0.515]	chr6	284824	52	INTRON	INTRON	NUP153	ENSG00000124789.12	ENST00000613258.4:ENST00000537253.5:ENST00000262077.3	protein_coding	protein_coding	protein_coding	protein_coding	13	118	2	1.42298	2.3103949999999998	3.19781	0.0171073	4.3655e-4	0.110916	0.0191798
chr12	45829037	45829136	5123714	0	+	0.323232	(0.32,0.35]	chr12	483325	72	INTRON	INTRON	ARID2	ENSG00000189079.17	ENST00000334344.11:ENST00000422737.6	protein_coding	protein_coding	protein_coding	protein_coding	2	34	2	2.30673	2.31039	2.31405	0.0584434	0.0517107	0.176696	0.167723
chr13	28248313	28248413	5461932	0	+	0.34	(0.32,0.35]	chr13	523271	79	INTRON	INTRON	PAN3	ENSG00000152520.14	ENST00000503791.5:ENST00000380958.8:ENST00000399613.1:ENST00000483842.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	34	2	2.30673	2.31039	2.31405	0.0584434	0.0517107	0.176696	0.167723
chr15	72477112	72477212	6059188	0	+	0.35	(0.32,0.35]	chr15	576852	17	INTRON	INTRON	ARIH1	ENSG00000166233.15	ENST00000379887.9:ENST00000570085.5:ENST00000564062.1:ENST00000567762.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	34	2	2.30673	2.31039	2.31405	0.0584434	0.0517107	0.176696	0.167723
chr17	49000752	49000850	6624637	0	+	0.326531	(0.32,0.35]	chr17	646593	12	INTRON	INTRON	IGF2BP1	ENSG00000159217.10	ENST00000290341.8:ENST00000510023.5:ENST00000431824.2:ENST00000515586.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	34	2	2.30673	2.31039	2.31405	0.0584434	0.0517107	0.176696	0.167723
chr5	119321294	119321394	2462124	0	+	0.35	(0.32,0.35]	chr5	235848	46	INTRON	INTRON	TNFAIP8	ENSG00000145779.8	ENST00000274456.6:ENST00000388882.5	protein_coding	protein_coding	protein_coding	protein_coding	2	34	2	2.30673	2.31039	2.31405	0.0584434	0.0517107	0.176696	0.167723
chrX	102847619	102847719	7696695	0	+	0.35	(0.32,0.35]	chrX	787648	12	INTRON	INTRON	LINC00630	ENSG00000223546.8	ENST00000431616.5:ENST00000440496.5:ENST00000658813.1:ENST00000656628.1:ENST00000416381.1	lncRNA	lncRNA	lncRNA	lncRNA	2	34	2	2.30673	2.31039	2.31405	0.0584434	0.0517107	0.176696	0.167723
chr3	50059062	50059131	1424161	0	+	0.333333	(0.32,0.35]	chr3	150023	1	INTRON	INTRON	RBM6	ENSG00000004534.15	ENST00000442092.5:ENST00000443081.5:ENST00000419610.5:ENST00000441115.5:ENST00000422955.5:ENST00000454079.5:ENST00000266022.9:ENST00000434592.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	70	2	1.54135	2.3103499999999997	3.07935	0.0353776	0.00724137	0.150752	0.0729826
chr11	17146633	17146729	4928459	0	-	0.510417	(0.476,0.515]	chr11	461460	3	INTRON	INTRON	PIK3C2A	ENSG00000011405.14	ENST00000531428.1:ENST00000265970.11:ENST00000691414.1:ENST00000533645.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	76	2	2.24612	2.3103	2.37448	0.00799949	0.00419067	0.0766625	0.0591344
chr6	15277244	15277344	2823258	0	+	0.41	(0.408,0.44]	chr6	265190	279	INTRON	INTRON	JARID2	ENSG00000008083.14	ENST00000341776.7:ENST00000397311.4	protein_coding	protein_coding	protein_coding	protein_coding	4	48	2	2.03431	2.310275	2.58624	0.0273686	0.0154896	0.123904	0.108998
chr8	102398985	102399085	4012619	0	-	0.35	(0.32,0.35]	chr8	367237	370	INTRON	INTRON	UBR5	ENSG00000104517.13	ENST00000520539.6:ENST00000220959.8:ENST00000521922.5	protein_coding	protein_coding	protein_coding	protein_coding	5	75	2	2.18092	2.3102400000000003	2.43956	0.0256608	0.00352597	0.120491	0.0546236
chr14	73105062	73105160	5784559	0	+	0.326531	(0.32,0.35]	chr14	547878	12	INTRON	INTRON	RBM25	ENSG00000119707.14	ENST00000527432.5:ENST00000261973.12:ENST00000532683.5:ENST00000528081.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	127	2	1.91077	2.31022	2.70967	0.00870588	0.00105927	0.0788605	0.0299929
chr8	39097258	39097358	3739319	0	+	0.46	(0.44,0.476]	chr8	347595	51	INTRON	INTRON	ADAM9	ENSG00000168615.13	ENST00000678474.1:ENST00000676765.1:ENST00000676936.1:ENST00000677908.1:ENST00000677004.1:ENST00000677165.1:ENST00000481058.2:ENST00000676643.1:ENST00000676669.1:ENST00000679268.1:ENST00000677582.1:ENST00000676617.1:ENST00000677137.1:ENST00000678540.1:ENST00000677359.1:ENST00000678730.1:ENST00000487273.7:ENST00000678253.1:ENST00000676489.1:ENST00000379917.7:ENST00000468065.5:ENST00000481873.7:ENST00000676919.1:ENST00000678863.1:ENST00000484143.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	54	2	1.83899	2.3101399999999996	2.78129	0.0589734	0.00229634	0.167915	0.0439319
chr14	103691858	103691958	5828293	0	+	0.51	(0.476,0.515]	chr14	553133	1	SS3_PROX	SS3_PROX:INTRON	KLC1	ENSG00000126214.22	ENST00000348520.10:ENST00000334553.11:ENST00000555836.5:ENST00000347839.10:ENST00000452929.6:ENST00000554280.5:ENST00000557450.5:ENST00000554228.5:ENST00000634686.1:ENST00000246489.11:ENST00000537046.6:ENST00000535194.2:ENST00000538504.6:ENST00000557143.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	40	2	2.05154	2.31011	2.56868	0.0336015	0.0256676	0.134145	0.133676
chr6	34883806	34883904	3086295	0	-	0.326531	(0.32,0.35]	chr6	288721	3	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	TAF11	ENSG00000064995.19	ENST00000361288.9:ENST00000650109.1:ENST00000693593.1:ENST00000420584.3:ENST00000689560.1:ENST00000685682.1:ENST00000691871.1:ENST00000686190.1:ENST00000687970.1:ENST00000688059.1:ENST00000690161.1:ENST00000693481.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	63	2	2.19668	2.3101000000000003	2.42352	0.021398	0.0122807	0.123719	0.091087
chr2	31927107	31927206	1090280	0	-	0.474747	(0.44,0.476]	chr2	116896	30	INTRON	INTRON	MEMO1:DPY30	ENSG00000162959.14:ENSG00000162961.14	ENST00000295065.9:ENST00000446765.5:ENST00000404530.6:ENST00000379383.7:ENST00000490459.5:ENST00000426310.6:ENST00000422936.5:ENST00000413686.1:ENST00000407893.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	64	2	1.71574	2.31007	2.9044	0.045256	0.00132926	0.149888	0.0335085
chr17	59699854	59699952	6802673	0	-	0.377551	(0.35,0.378]	chr17	671890	11	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	PTRH2	ENSG00000141378.15	ENST00000587935.1:ENST00000409433.2:ENST00000393038.3:ENST00000470557.2:ENST00000579915.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	43	2	1.75561	2.31006	2.86451	0.0739399	0.0109111	0.190914	0.0923273
chr2	61515767	61515865	1130994	0	-	0.561224	(0.515,0.57]	chr2	121606	9	INTRON	INTRON	XPO1	ENSG00000082898.19	ENST00000676553.1:ENST00000677556.1:ENST00000677814.1:ENST00000676771.1:ENST00000677803.1:ENST00000677239.1:ENST00000678790.1:ENST00000677928.1:ENST00000678182.1:ENST00000677150.1:ENST00000678172.1:ENST00000678360.1:ENST00000678081.1:ENST00000676889.1:ENST00000676783.1:ENST00000679035.1:ENST00000677422.1:ENST00000677417.1:ENST00000677813.1:ENST00000676999.1:ENST00000676667.1:ENST00000678263.1:ENST00000678877.1:ENST00000677933.1:ENST00000680228.1:ENST00000677289.1:ENST00000677190.1:ENST00000401558.7:ENST00000428210.5:ENST00000677290.1:ENST00000677850.1:ENST00000451765.6:ENST00000676789.1:ENST00000678741.1:ENST00000404992.6:ENST00000406957.5:ENST00000443240.5:ENST00000476585.5:ENST00000468259.1:ENST00000420673.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	85	2	1.52049	2.31006	3.09963	0.0366813	9.06736e-5	0.138959	0.00796627
chr14	30984782	30984882	5857457	0	-	0.3	(0.28,0.32]	chr14	556508	204	INTRON	INTRON	STRN3	ENSG00000196792.12	ENST00000355683.9:ENST00000357479.10:ENST00000555358.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	104	2	1.58784	2.3100300000000002	3.03222	0.0369776	9.72587e-4	0.139194	0.0287313
chr9	130595788	130595888	4213255	0	+	0.42	(0.408,0.44]	chr9	386273	2	SS5_PROX	SS5_PROX:INTRON	FUBP3	ENSG00000107164.16	ENST00000319725.10:ENST00000650723.1:ENST00000465949.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	54	2	1.88062	2.310015	2.73941	0.0534548	0.002744	0.162935	0.0484022
chr20	45423052	45423149	7279903	0	+	0.412371	(0.408,0.44]	chr20	740203	14	EXON_MRNA	EXON_MRNA:INTRON	PIGT	ENSG00000124155.19	ENST00000279035.14:ENST00000638246.1:ENST00000543458.7:ENST00000424705.3:ENST00000640549.2:ENST00000692236.1:ENST00000689203.1:ENST00000638383.1:ENST00000638612.1:ENST00000640364.1:ENST00000639984.1:ENST00000638978.1:ENST00000638689.1:ENST00000640108.1:ENST00000640666.1:ENST00000640996.1:ENST00000372689.9:ENST00000638745.1:ENST00000638594.1:ENST00000279036.12:ENST00000640986.1:ENST00000638691.2:ENST00000638387.1:ENST00000640692.1:ENST00000638445.1:ENST00000639932.1:ENST00000640585.1:ENST00000638671.1:ENST00000640107.1:ENST00000640272.1:ENST00000638938.1:ENST00000455050.2:ENST00000640175.1:ENST00000639499.1:ENST00000638714.1:ENST00000640542.1:ENST00000639783.1:ENST00000640210.1:ENST00000639382.1:ENST00000640194.1:ENST00000432270.2:ENST00000545755.3:ENST00000639417.1:ENST00000639292.2:ENST00000640324.1:ENST00000639664.1:ENST00000638710.1:ENST00000638415.1:ENST00000639250.1:ENST00000638537.1:ENST00000638962.1:ENST00000640940.1:ENST00000639872.1:ENST00000638927.1:ENST00000638641.1:ENST00000638277.1:ENST00000638241.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	48	2	1.53263	2.310005	3.08738	0.0733439	0.00478231	0.190051	0.0636201
chr7	111091236	111091336	3619394	0	-	0.43	(0.408,0.44]	chr7	337093	1273	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	48	2	1.53263	2.310005	3.08738	0.0733439	0.00478231	0.190051	0.0636201
chr7	50601107	50601207	3530726	0	-	0.45	(0.44,0.476]	chr7	329388	52	INTRON	INTRON	GRB10	ENSG00000106070.20	ENST00000335866.7:ENST00000398812.6:ENST00000398810.6:ENST00000401949.6:ENST00000402578.5:ENST00000644769.1:ENST00000403097.6:ENST00000644879.1:ENST00000406641.5:ENST00000402497.6:ENST00000357271.9:ENST00000643299.1:ENST00000407526.6:ENST00000645075.2:ENST00000473696.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	55	2	1.47433	2.30996	3.14559	0.0595438	0.00384923	0.16883600000000001	0.0562562
chr19	52561537	52561636	7095604	0	+	0.484848	(0.476,0.515]	chr19	711375	21	INTRON	INTRON	ZNF808:ZNF701	ENSG00000198482.14:ENSG00000167562.14	ENST00000487863.5:ENST00000478039.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	6	62	2	1.486	2.309945	3.13389	0.0430512	0.00405473	0.148082	0.0578376
chr1	110373796	110373895	182690	0	+	0.464646	(0.44,0.476]	chr1	20259	9	INTRON	INTRON	LAMTOR5-AS1	ENSG00000224699.10	ENST00000626572.2	lncRNA	lncRNA	lncRNA	lncRNA	5	64	2	2.07016	2.3098	2.54944	0.0151815	0.00591346	0.0994339	0.0694038
chrX	136856347	136856446	7897435	0	-	0.464646	(0.44,0.476]	chrX	804139	74	INTRON	INTRON	RBMX	ENSG00000147274.14	ENST00000561733.5	protein_coding	processed_transcript	protein_coding	processed_transcript	5	64	2	2.07016	2.3098	2.54944	0.0151815	0.00591346	0.0994339	0.0694038
chr20	41089500	41089599	7274119	0	+	0.343434	(0.32,0.35]	chr20	739249	46	INTRON	INTRON	TOP1	ENSG00000198900.7	ENST00000361337.3:ENST00000681113.1:ENST00000681058.1:ENST00000681392.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	55	2	1.93031	2.30976	2.68921	0.0231421	0.0230336	0.126939	0.118056
chr7	73511252	73511352	3554990	0	-	0.34	(0.32,0.35]	chr7	330812	4	SS3_PROX	SS3_PROX:INTRON	BAZ1B	ENSG00000009954.11	ENST00000339594.9:ENST00000404251.1	protein_coding	protein_coding	protein_coding	protein_coding	5	75	2	2.03198	2.309755	2.58753	0.0193728	0.00560122	0.108916	0.0678837
chr19	5705371	5705471	7124556	0	-	0.46	(0.44,0.476]	chr19	717126	2	SS5_PROX	SS5_PROX:INTRON	LONP1	ENSG00000196365.12	ENST00000360614.8:ENST00000587552.5:ENST00000540670.6:ENST00000593119.5:ENST00000585374.5:ENST00000590558.5:ENST00000590729.5:ENST00000590206.1:ENST00000588589.5:ENST00000587365.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	101	2	1.52906	2.3097250000000003	3.09039	0.017448	7.4601e-4	0.112716	0.0251072
chr8	67206397	67206495	3962410	0	-	0.255102	[0,0.28]	chr8	363559	12	INTRON	INTRON	ARFGEF1	ENSG00000066777.9	ENST00000520381.5:ENST00000518789.5:ENST00000262215.8:ENST00000522878.5:ENST00000518230.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	57	2	2.28885	2.3097000000000003	2.33055	0.062338	0.0181093	0.175343	0.114853
chr15	28597181	28597280	5987986	0	+	0.393939	(0.378,0.408]	chr15	569248	31	INTRON	INTRON	HERC2P9	ENSG00000206149.11	ENST00000689985.1:ENST00000688694.1:ENST00000529537.2:ENST00000529624.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	13	166	2	2.07223	2.3096949999999996	2.54716	0.00385645	1.44801e-4	0.0542786	0.0104652
chr1	27480991	27481091	406673	0	-	0.43	(0.408,0.44]	chr1	48986	517	INTRON	INTRON	WASF2	ENSG00000158195.11	ENST00000618852.5:ENST00000536657.1	protein_coding	protein_coding	protein_coding	protein_coding	6	73	2	2.08621	2.3096699999999997	2.53313	0.00739595	0.00683843	0.0748032	0.074277
chr7	158803267	158803367	3689551	0	-	0.41	(0.408,0.44]	chr7	342421	38	INTRON	INTRON	ESYT2	ENSG00000117868.18	ENST00000251527.10:ENST00000275418.13:ENST00000652148.1:ENST00000483958.5:ENST00000497111.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	73	2	2.08621	2.3096699999999997	2.53313	0.00739595	0.00683843	0.0748032	0.074277
chr8	111021705	111021804	4027415	0	-	0.494949	(0.476,0.515]	chr8	367856	63	INTRON	INTRON	LINC01608	ENSG00000253877.6	ENST00000670392.1:ENST00000658597.1:ENST00000662310.1:ENST00000671489.1:ENST00000668858.1:ENST00000669698.1:ENST00000665803.1:ENST00000658028.1:ENST00000664704.1:ENST00000661954.1:ENST00000661561.1:ENST00000658081.1:ENST00000667145.1:ENST00000658119.1:ENST00000524283.5:ENST00000669893.1:ENST00000660015.1:ENST00000668956.1:ENST00000657323.1:ENST00000663408.1:ENST00000653924.1:ENST00000659834.1:ENST00000658508.1:ENST00000669744.1:ENST00000658733.1:ENST00000657532.1:ENST00000665011.1:ENST00000523557.2:ENST00000669997.1:ENST00000663666.1:ENST00000660667.1	lncRNA	lncRNA	lncRNA	lncRNA	6	61	2	1.73294	2.30962	2.8863	0.0174121	0.0111679	0.112632	0.0877435
chr2	112650774	112650871	852111	0	+	0.453608	(0.44,0.476]	chr2	95574	27	INTRON	INTRON	SLC20A1	ENSG00000144136.11	ENST00000272542.8:ENST00000423633.5:ENST00000498224.5:ENST00000433924.5:ENST00000456264.5:ENST00000413135.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	18	217	2	2.19424	2.309565	2.42489	4.20572e-4	3.16913e-4	0.0183576	0.0164308
chr4	108620568	108620640	2018282	0	+	0.430556	(0.408,0.44]	chr4	200687	1	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	RPL34	ENSG00000109475.17	ENST00000502534.5:ENST00000394667.8:ENST00000394665.5:ENST00000503574.1:ENST00000506397.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	23	279	2	2.28789	2.3095049999999997	2.33112	3.38195e-4	1.13626e-4	0.0170719	0.00913065
chr11	46503581	46503680	4946343	0	-	0.383838	(0.378,0.408]	chr11	463465	82	INTRON	INTRON	AMBRA1	ENSG00000110497.15	ENST00000683756.1:ENST00000534300.5:ENST00000533727.5:ENST00000314845.7:ENST00000458649.6:ENST00000528950.1	protein_coding	protein_coding	protein_coding	protein_coding	3	41	2	1.76032	2.30943	2.85854	0.0721577	0.0107837	0.187433	0.0920575
chr18	184011	184111	6855084	0	+	0.4	(0.378,0.408]	chr18	679521	33	INTRON	INTRON	USP14	ENSG00000101557.15	ENST00000582707.5:ENST00000400266.7:ENST00000261601.8:ENST00000578942.5:ENST00000383589.6:ENST00000583119.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	41	2	1.76032	2.30943	2.85854	0.0721577	0.0107837	0.187433	0.0920575
chr22	24565586	24565686	7488474	0	+	0.39	(0.378,0.408]	chr22	764098	74	INTRON	INTRON	SNRPD3:ENSG00000286070	ENSG00000100028.12:ENSG00000286070.2	ENST00000215829.8:ENST00000652248.1:ENST00000402849.5:ENST00000404603.5:ENST00000439775.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	41	2	1.76032	2.30943	2.85854	0.0721577	0.0107837	0.187433	0.0920575
chr4	2494463	2494563	1912081	0	+	0.54	(0.515,0.57]	chr4	191929	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	RNF4	ENSG00000063978.16	ENST00000503659.5:ENST00000504224.5:ENST00000541204.5:ENST00000502316.5:ENST00000509388.5:ENST00000507247.5:ENST00000314289.13:ENST00000511843.5:ENST00000509258.5:ENST00000513284.5:ENST00000507784.5:ENST00000513578.5:ENST00000511859.5:ENST00000511892.5:ENST00000513643.5:ENST00000503123.5:ENST00000509206.1:ENST00000506706.5:ENST00000511600.5:ENST00000513450.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	34	2	1.7074	2.3094	2.9114	0.0779432	0.00826019	0.196685	0.0813266
chr1	112693329	112693429	187078	0	+	0.42	(0.408,0.44]	chr1	20748	4	SS5_PROX	SS5_PROX:INTRON	MOV10	ENSG00000155363.19	ENST00000413052.6:ENST00000369645.6:ENST00000686097.1:ENST00000690243.1:ENST00000686428.1:ENST00000369644.5:ENST00000496577.5:ENST00000468624.5:ENST00000357443.2:ENST00000687509.1:ENST00000689955.1:ENST00000685268.1:ENST00000686923.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	74	2	1.87932	2.309365	2.73941	0.0172104	0.002744	0.104099	0.0484022
chr11	107792136	107792231	5033133	0	-	0.431579	(0.408,0.44]	chr11	474296	13	UTR3	UTR3:EXON_MRNA	SLC35F2	ENSG00000110660.15	ENST00000525071.5:ENST00000525815.6	protein_coding	protein_coding	protein_coding	protein_coding	15	184	2	2.16261	2.30936	2.45611	0.00129833	2.37558e-4	0.0330434	0.0136195
chr22	20816590	20816689	7559256	0	-	0.474747	(0.44,0.476]	chr22	773179	27	INTRON	INTRON	PI4KA	ENSG00000241973.11	ENST00000255882.11:ENST00000485963.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	47	2	1.81595	2.3093500000000002	2.80275	0.0317953	0.0146513	0.14477	0.0982604
chr3	185800365	185800464	1886102	0	-	0.282828	(0.28,0.32]	chr3	188573	1017	INTRON	INTRON	IGF2BP2	ENSG00000073792.16	ENST00000382199.7:ENST00000346192.7:ENST00000457616.6:ENST00000421047.3:ENST00000461957.5:ENST00000493302.5:ENST00000466476.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	50	2	2.28998	2.309345	2.32871	0.0581621	0.0166401	0.167723	0.110511
chr9	104759729	104759826	4181396	0	+	0.278351	[0,0.28]	chr9	381320	5	UTR3	UTR3:EXON_MRNA	NIPSNAP3A	ENSG00000136783.10	ENST00000374767.5	protein_coding	protein_coding	protein_coding	protein_coding	3	57	2	1.84147	2.309315	2.77716	0.0610416	0.022039	0.193277	0.115395
chr11	68614864	68614958	4818914	0	+	0.56383	(0.515,0.57]	chr11	449080	3	UTR3	UTR3:EXON_MRNA	PPP6R3	ENSG00000110075.15	ENST00000393800.7:ENST00000265637.8:ENST00000393801.7:ENST00000265636.9:ENST00000529710.5:ENST00000527403.6	protein_coding	protein_coding	protein_coding	protein_coding	4	41	2	1.63184	2.309305	2.98677	0.0545832	0.00632549	0.165292	0.0722266
chr16	89809536	89809632	6544751	0	-	0.53125	(0.515,0.57]	chr16	634602	7	INTRON	INTRON	FANCA	ENSG00000187741.16	ENST00000561667.2:ENST00000389301.8:ENST00000568369.6:ENST00000564475.6:ENST00000696275.1:ENST00000696287.1:ENST00000696286.1:ENST00000696291.1:ENST00000696276.1:ENST00000567205.2:ENST00000567284.7:ENST00000696277.1:ENST00000696292.1:ENST00000563767.2:ENST00000567621.6:ENST00000696288.1:ENST00000696293.1:ENST00000566889.5:ENST00000389302.7:ENST00000696294.1:ENST00000696295.1:ENST00000563673.5:ENST00000543736.5:ENST00000534992.5:ENST00000565582.5:ENST00000696296.1:ENST00000563513.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	41	2	1.63184	2.309305	2.98677	0.0545832	0.00632549	0.165292	0.0722266
chr6	75609770	75609870	2905021	0	+	0.52	(0.515,0.57]	chr6	274477	68	INTRON	INTRON	SENP6	ENSG00000112701.18	ENST00000370010.6:ENST00000447266.7:ENST00000327284.12:ENST00000493959.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	41	2	1.63184	2.309305	2.98677	0.0545832	0.00632549	0.165292	0.0722266
chr9	131400051	131400151	4217029	0	+	0.49	(0.476,0.515]	chr9	386720	54	INTRON	INTRON	PRRC2B	ENSG00000288701.1	ENST00000682525.1:ENST00000684596.1:ENST00000683519.1:ENST00000682501.1	protein_coding	protein_coding	protein_coding	protein_coding	12	132	2	1.74951	2.3092949999999997	2.86908	0.00678483	4.03011e-4	0.0711802	0.0180338
chr10	130138011	130138111	4536343	0	+	0.47	(0.44,0.476]	chr10	418779	11	INTRON	INTRON	GLRX3	ENSG00000108010.12	ENST00000331244.10:ENST00000481034.1:ENST00000368644.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	47	2	1.75627	2.30929	2.86231	0.0380723	0.012214	0.157702	0.0910127
chr16	88704985	88705083	6539433	0	-	0.530612	(0.515,0.57]	chr16	633807	15	INTRON	INTRON	RNF166	ENSG00000158717.11	ENST00000562544.1:ENST00000312838.9:ENST00000567844.1	protein_coding	protein_coding	protein_coding	protein_coding	9	95	2	1.89549	2.309285	2.72308	0.0094473	2.69455e-4	0.0817766	0.0145437
chr19	4421167	4421267	7001949	0	+	0.45	(0.44,0.476]	chr19	694529	27	INTRON	INTRON	CHAF1A	ENSG00000167670.16	ENST00000301280.10:ENST00000587739.1:ENST00000585371.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	48	2	2.08211	2.3092550000000003	2.5364	0.0309324	0.0130715	0.13151	0.0996047
chr6	47502480	47502580	2873812	0	+	0.47	(0.44,0.476]	chr6	272725	135	INTRON	INTRON	CD2AP	ENSG00000198087.7	ENST00000359314.5	protein_coding	protein_coding	protein_coding	protein_coding	4	48	2	2.08211	2.3092550000000003	2.5364	0.0309324	0.0130715	0.13151	0.0996047
chr3	64015571	64015669	1724004	0	-	0.285714	(0.28,0.32]	chr3	176303	21	EXON_MRNA	EXON_MRNA:INTRON	PSMD6	ENSG00000163636.11	ENST00000394431.6:ENST00000295901.9:ENST00000480205.5:ENST00000467853.5:ENST00000492933.5:ENST00000476464.5:ENST00000482510.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	51	2	2.18975	2.309215	2.42868	0.0776042	0.0105331	0.196285	0.0908969
chr9	111934380	111934479	4184841	0	+	0.444444	(0.44,0.476]	chr9	381737	15	UTR3	UTR3:EXON_MRNA	UGCG	ENSG00000148154.10	ENST00000374279.4	protein_coding	protein_coding	protein_coding	protein_coding	19	222	2	2.20252	2.309215	2.41591	4.66883e-4	2.56856e-4	0.0199881	0.0142732
chr11	808621	808718	4889959	0	-	0.515464	(0.515,0.57]	chr11	457942	22	INTRON	INTRON	PIDD1	ENSG00000177595.19	ENST00000534525.5:ENST00000534649.2:ENST00000530911.1	protein_coding	retained_intron	protein_coding	retained_intron:nonsense_mediated_decay:processed_transcript	3	34	2	1.8707	2.30921	2.74772	0.0523213	0.0142192	0.160182	0.103638
chr16	15661438	15661538	6306995	0	+	0.53	(0.515,0.57]	chr16	603412	90	INTRON	INTRON	NDE1	ENSG00000072864.16	ENST00000396355.5:ENST00000674888.1:ENST00000675171.1:ENST00000675951.1:ENST00000674900.1:ENST00000674588.1:ENST00000674538.1:ENST00000396354.6:ENST00000675926.1:ENST00000570727.5:ENST00000573203.5:ENST00000674995.1:ENST00000674554.1:ENST00000674581.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	34	2	1.8707	2.30921	2.74772	0.0523213	0.0142192	0.160182	0.103638
chr5	31507523	31507622	2596757	0	-	0.545455	(0.515,0.57]	chr5	246668	25	INTRON	INTRON	DROSHA	ENSG00000113360.17	ENST00000344624.8:ENST00000511367.6:ENST00000513349.5:ENST00000512076.1	protein_coding	protein_coding	protein_coding	protein_coding	3	34	2	1.8707	2.30921	2.74772	0.0523213	0.0142192	0.160182	0.103638
chr6	37851099	37851199	2857346	0	+	0.45	(0.44,0.476]	chr6	270225	307	INTRON	INTRON	ZFAND3	ENSG00000156639.12	ENST00000287218.9:ENST00000373391.6:ENST00000474522.5	protein_coding	protein_coding	protein_coding	protein_coding	19	229	2	2.03767	2.30921	2.58075	0.00149335	5.03477e-5	0.0350651	0.00582147
chr17	61975663	61975762	6809963	0	-	0.50505	(0.476,0.515]	chr17	672873	24	INTRON	INTRON	MED13	ENSG00000108510.10	ENST00000397786.7	protein_coding	protein_coding	protein_coding	protein_coding	3	39	2	2.13304	2.3091549999999996	2.48527	0.03496	0.024866	0.13747500000000001	0.132101
chr19	29989413	29989513	7048035	0	+	0.49	(0.476,0.515]	chr19	702695	26	INTRON	INTRON	URI1	ENSG00000105176.18	ENST00000360605.8:ENST00000574233.5:ENST00000392271.6:ENST00000574110.5:ENST00000574666.5:ENST00000576442.1:ENST00000570704.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	39	2	2.13304	2.3091549999999996	2.48527	0.03496	0.024866	0.13747500000000001	0.132101
chr6	28225958	28226050	2839602	0	+	0.5	(0.476,0.515]	chr6	266573	2	INTRON	INTRON	ZSCAN9	ENSG00000137185.13	ENST00000531941.1:ENST00000531981.5:ENST00000252207.10:ENST00000425468.6:ENST00000531979.5:ENST00000647743.1:ENST00000527436.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	39	2	2.13304	2.3091549999999996	2.48527	0.03496	0.024866	0.13747500000000001	0.132101
chr7	50790055	50790154	3532655	0	-	0.50505	(0.476,0.515]	chr7	329547	73	INTRON	INTRON	GRB10	ENSG00000106070.20	ENST00000335866.7:ENST00000644769.1:ENST00000644879.1:ENST00000402497.6:ENST00000645075.2:ENST00000439044.7:ENST00000644716.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	39	2	2.13304	2.3091549999999996	2.48527	0.03496	0.024866	0.13747500000000001	0.132101
chr3	10143221	10143321	1363128	0	+	0.57	(0.515,0.57]	chr3	143670	2	SS5_PROX	SS5_PROX:INTRON	VHL	ENSG00000134086.9	ENST00000696153.1:ENST00000256474.3:ENST00000696142.1:ENST00000345392.2:ENST00000696143.1:ENST00000477538.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	12	125	2	2.14437	2.309135	2.4739	0.00207895	2.84482e-4	0.0411801	0.0150568
chr5	6728413	6728512	2315985	0	+	0.535354	(0.515,0.57]	chr5	224267	129	INTRON	INTRON	TENT4A	ENSG00000112941.14	ENST00000230859.8:ENST00000515721.1:ENST00000631941.2	protein_coding	protein_coding	protein_coding	protein_coding	7	69	2	1.94094	2.309135	2.67733	0.00719628	0.00366712	0.0756137	0.0535094
chr1	21016595	21016695	392017	0	-	0.49	(0.476,0.515]	chr1	46809	134	INTRON	INTRON	EIF4G3	ENSG00000075151.24	ENST00000374935.7:ENST00000602326.6:ENST00000685872.1:ENST00000264211.13:ENST00000686579.1:ENST00000688741.1:ENST00000684485.1:ENST00000681717.1:ENST00000681767.1:ENST00000400422.6:ENST00000634879.2:ENST00000693470.1:ENST00000685814.1:ENST00000356916.7:ENST00000682284.1:ENST00000438975.5:ENST00000411888.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	29	2	2.13854	2.309015	2.47949	0.0776563	0.0326974	0.196285	0.145164
chr1	64799584	64799683	134265	0	+	0.494949	(0.476,0.515]	chr1	15245	97	INTRON	INTRON	RAVER2	ENSG00000162437.15	ENST00000294428.8:ENST00000371072.8:ENST00000418058.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	29	2	2.13854	2.309015	2.47949	0.0776563	0.0326974	0.196285	0.145164
chr1	150222210	150222305	550671	0	-	0.505263	(0.476,0.515]	chr1	64669	11	INTRON	INTRON	ANP32E	ENSG00000143401.15	ENST00000583931.6:ENST00000629042.2:ENST00000616917.4:ENST00000436748.6:ENST00000534437.1:ENST00000369114.9:ENST00000369115.3:ENST00000533654.5	protein_coding	protein_coding	protein_coding	protein_coding	2	29	2	2.13854	2.309015	2.47949	0.0776563	0.0326974	0.196285	0.145164
chr1	155563462	155563558	229424	0	+	0.510417	(0.476,0.515]	chr1	26942	6	EXON_LNCRNA	EXON_LNCRNA	ASH1L-AS1	ENSG00000235919.5	ENST00000456633.2:ENST00000452809.1	lncRNA	lncRNA	lncRNA	lncRNA	2	29	2	2.13854	2.309015	2.47949	0.0776563	0.0326974	0.196285	0.145164
chr15	43186233	43186333	6010996	0	+	0.48	(0.476,0.515]	chr15	572343	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	CCNDBP1	ENSG00000166946.14	ENST00000564630.5:ENST00000566515.5:ENST00000300213.9:ENST00000569745.5:ENST00000563065.5:ENST00000567434.5:ENST00000565296.5:ENST00000568507.5:ENST00000566833.1:ENST00000562553.5:ENST00000567690.5:ENST00000444658.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	29	2	2.13854	2.309015	2.47949	0.0776563	0.0326974	0.196285	0.145164
chr15	90398027	90398127	6098623	0	+	0.49	(0.476,0.515]	chr15	580527	62	INTRON	INTRON	IQGAP1	ENSG00000140575.13	ENST00000268182.10:ENST00000633485.1:ENST00000560738.1:ENST00000560418.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	29	2	2.13854	2.309015	2.47949	0.0776563	0.0326974	0.196285	0.145164
chr16	312652	312752	6426455	0	-	0.51	(0.476,0.515]	chr16	617494	22	INTRON	INTRON	AXIN1	ENSG00000103126.15	ENST00000262320.8:ENST00000461023.5:ENST00000354866.7:ENST00000481769.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	29	2	2.13854	2.309015	2.47949	0.0776563	0.0326974	0.196285	0.145164
chr17	49753236	49753335	6794047	0	-	0.50505	(0.476,0.515]	chr17	670428	61	INTRON	INTRON	FAM117A	ENSG00000121104.8	ENST00000240364.7:ENST00000513602.5:ENST00000503855.5:ENST00000514018.5:ENST00000505159.5:ENST00000506156.1:ENST00000509347.5:ENST00000503720.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	29	2	2.13854	2.309015	2.47949	0.0776563	0.0326974	0.196285	0.145164
chr5	14667467	14667567	2320914	0	+	0.5	(0.476,0.515]	chr5	224811	21	INTRON	INTRON	OTULIN	ENSG00000154124.5	ENST00000503023.1:ENST00000284274.5:ENST00000507335.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	29	2	2.13854	2.309015	2.47949	0.0776563	0.0326974	0.196285	0.145164
chr7	112206694	112206716	3380106	0	+	0.5	(0.476,0.515]	chr7	316660	1	UTR5	UTR5:EXON_MRNA	ZNF277	ENSG00000198839.10	ENST00000361822.8:ENST00000361946.8:ENST00000457808.5:ENST00000421043.5:ENST00000425229.5:ENST00000450657.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	29	2	2.13854	2.309015	2.47949	0.0776563	0.0326974	0.196285	0.145164
chr2	169596110	169596209	906588	0	+	0.545455	(0.515,0.57]	chr2	100021	30	INTRON	INTRON	PPIG	ENSG00000138398.17	ENST00000678088.1:ENST00000677392.1:ENST00000433207.6:ENST00000679324.1:ENST00000414307.6:ENST00000676508.1:ENST00000260970.8:ENST00000678695.1:ENST00000409714.7:ENST00000530152.5:ENST00000677750.1:ENST00000676557.1:ENST00000678721.1:ENST00000462903.6:ENST00000676756.1:ENST00000679107.1:ENST00000678499.1:ENST00000678638.1:ENST00000448752.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	69	2	1.73535	2.30901	2.88267	0.0165373	0.00152842	0.110511	0.0353936
chr22	16797275	16797375	7546372	0	-	0.33	(0.32,0.35]	chr22	771315	125	INTRON	INTRON	XKR3	ENSG00000172967.8	ENST00000331428.5:ENST00000684488.1	protein_coding	protein_coding	protein_coding	protein_coding	7	103	2	2.05211	2.309	2.56589	0.0106769	0.00204522	0.0861859	0.041908
chr8	73977185	73977282	3780594	0	+	0.515464	(0.515,0.57]	chr8	350728	3	INTRON	INTRON	TMEM70	ENSG00000175606.11	ENST00000520167.5:ENST00000312184.6:ENST00000416961.6:ENST00000517439.1:ENST00000517614.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	52	2	2.27709	2.30898	2.34087	0.0469761	0.00275782	0.151917	0.0486216
chr1	29176773	29176872	410393	0	-	0.363636	(0.35,0.378]	chr1	49421	34	INTRON	INTRON	SRSF4	ENSG00000116350.18	ENST00000373795.7:ENST00000691479.1:ENST00000466448.4:ENST00000605204.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	111	2	1.8773	2.3089500000000003	2.7406	0.0184031	3.25081e-4	0.108834	0.0160177
chr11	603071	603167	4719847	0	+	0.583333	(0.57,1]	chr11	436210	10	INTRON	INTRON	PHRF1	ENSG00000070047.13	ENST00000264555.10:ENST00000416188.3:ENST00000534320.5:ENST00000413872.6:ENST00000533464.5:ENST00000532550.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	38	2	1.95484	2.308945	2.66305	0.0113205	0.00327879	0.0948452	0.0509077
chr14	34850171	34850270	5868192	0	-	0.50505	(0.476,0.515]	chr14	557409	211	INTRON	INTRON	BAZ1A	ENSG00000198604.11	ENST00000358716.8:ENST00000360310.6:ENST00000382422.6:ENST00000553573.1:ENST00000553853.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	49	2	1.88582	2.308935	2.73205	0.0273268	0.0159328	0.123904	0.109464
chr22	21979930	21980028	7561999	0	-	0.367347	(0.35,0.378]	chr22	773552	34	INTRON	INTRON	TOP3B	ENSG00000100038.20	ENST00000357179.10:ENST00000457179.5:ENST00000444502.5:ENST00000398793.6:ENST00000424393.5:ENST00000437929.5:ENST00000430142.5:ENST00000456075.5:ENST00000449704.5:ENST00000437103.1:ENST00000434517.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	96	2	2.15229	2.308935	2.46558	0.00545124	0.00387127	0.0669407	0.0543569
chr7	66542268	66542361	3539607	0	-	0.494624	(0.476,0.515]	chr7	330235	12	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	RABGEF1P1	ENSG00000229180.8	ENST00000449307.3:ENST00000639011.1:ENST00000692299.1:ENST00000686269.1:ENST00000649635.1:ENST00000625310.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	4	49	2	1.88582	2.308935	2.73205	0.0273268	0.0159328	0.123904	0.109464
chr19	4413043	4413143	7001867	0	+	0.39	(0.378,0.408]	chr19	694523	29	INTRON	INTRON	CHAF1A	ENSG00000167670.16	ENST00000301280.10:ENST00000587739.1	protein_coding	protein_coding	protein_coding	protein_coding	7	84	2	1.98727	2.30892	2.63057	0.00639052	0.0053733	0.0726555	0.0642754
chr7	66751789	66751889	3325586	0	+	0.5	(0.476,0.515]	chr7	309233	106	INTRON	INTRON	RABGEF1	ENSG00000154710.18	ENST00000607882.5:ENST00000284957.9:ENST00000450873.6:ENST00000442563.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	39	2	1.91817	2.3089199999999996	2.69967	0.0459211	0.0195838	0.164984	0.109483
chr15	73564456	73564555	6220483	0	-	0.40404	(0.378,0.408]	chr15	593882	8	INTRON	INTRON	NPTN	ENSG00000156642.17	ENST00000351217.10:ENST00000345330.9:ENST00000565325.5:ENST00000562924.5:ENST00000563691.5	protein_coding	protein_coding	protein_coding	protein_coding	6	76	2	2.22335	2.3088949999999997	2.39444	0.0122858	0.00388279	0.091087	0.0567196
chr22	47693386	47693485	7539979	0	+	0.373737	(0.35,0.378]	chr22	770705	20	INTRON	INTRON	ENSG00000224271	ENSG00000224271.7	ENST00000664761.1:ENST00000651071.1:ENST00000650683.1:ENST00000651536.1:ENST00000652499.1:ENST00000652656.1:ENST00000652072.1:ENST00000651445.1:ENST00000423737.5:ENST00000650834.1:ENST00000650660.1:ENST00000651056.1:ENST00000652611.1:ENST00000652399.1:ENST00000652123.1:ENST00000651311.1:ENST00000651458.1:ENST00000652505.1:ENST00000652702.2:ENST00000652334.1:ENST00000652030.2:ENST00000651403.1:ENST00000652228.1:ENST00000651124.1:ENST00000650972.1:ENST00000651985.1:ENST00000651754.1:ENST00000651637.1:ENST00000650924.1:ENST00000651003.1:ENST00000652168.1:ENST00000651948.2:ENST00000651293.1:ENST00000651939.1:ENST00000650787.1:ENST00000651517.1:ENST00000651662.1:ENST00000652690.1:ENST00000651638.1:ENST00000670853.1:ENST00000652750.1:ENST00000652080.1:ENST00000651294.1:ENST00000652164.1:ENST00000651538.1:ENST00000650775.1:ENST00000651983.1:ENST00000651033.1:ENST00000651584.1	lncRNA	lncRNA	lncRNA	lncRNA	9	122	2	2.22667	2.30889	2.39111	0.00260035	0.0022763	0.0454405	0.0437013
chr1	31058410	31058508	412825	0	-	0.5	(0.476,0.515]	chr1	49740	27	INTRON	INTRON	PUM1	ENSG00000134644.16	ENST00000426105.7:ENST00000373747.7:ENST00000257075.9:ENST00000424085.6:ENST00000525843.5:ENST00000440538.6:ENST00000373741.8:ENST00000373742.6:ENST00000526215.5:ENST00000525948.5:ENST00000480602.1:ENST00000524516.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	29	2	2.23335	2.308885	2.38442	0.0634557	0.0417472	0.177047	0.161736
chr12	47667951	47668051	5316829	0	-	0.49	(0.476,0.515]	chr12	505862	1	SS3_PROX	SS3_PROX:INTRON	RPAP3	ENSG00000005175.10	ENST00000005386.8:ENST00000432584.7:ENST00000380650.4	protein_coding	protein_coding	protein_coding	protein_coding	2	29	2	2.23335	2.308885	2.38442	0.0634557	0.0417472	0.177047	0.161736
chr12	53443005	53443095	5142841	0	+	0.477778	(0.476,0.515]	chr12	485357	4	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PRR13	ENSG00000205352.11	ENST00000549924.5:ENST00000551003.5:ENST00000429243.7:ENST00000552846.1:ENST00000549068.5:ENST00000549740.5:ENST00000546581.5:ENST00000549581.5:ENST00000547368.5:ENST00000379786.8:ENST00000551945.5:ENST00000551365.1:ENST00000549135.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	29	2	2.23335	2.308885	2.38442	0.0634557	0.0417472	0.177047	0.161736
chr12	98531379	98531479	5198780	0	+	0.48	(0.476,0.515]	chr12	491803	3	SS3_PROX	SS3_PROX:INTRON	TMPO	ENSG00000120802.14	ENST00000556029.6:ENST00000343315.9:ENST00000266732.8:ENST00000393053.6:ENST00000546828.6:ENST00000261210.9:ENST00000549938.5:ENST00000552831.1:ENST00000547214.1:ENST00000556678.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	29	2	2.23335	2.308885	2.38442	0.0634557	0.0417472	0.177047	0.161736
chr17	62010049	62010143	6810318	0	-	0.5	(0.476,0.515]	chr17	672914	1	SS5_PROX	SS5_PROX:INTRON	MED13	ENSG00000108510.10	ENST00000397786.7	protein_coding	protein_coding	protein_coding	protein_coding	2	29	2	2.23335	2.308885	2.38442	0.0634557	0.0417472	0.177047	0.161736
chr18	2991655	2991755	6944885	0	-	0.5	(0.476,0.515]	chr18	686840	89	INTRON	INTRON	LPIN2	ENSG00000101577.10	ENST00000261596.8:ENST00000677752.1	protein_coding	protein_coding	protein_coding	protein_coding	2	29	2	2.23335	2.308885	2.38442	0.0634557	0.0417472	0.177047	0.161736
chr2	168487810	168487910	902475	0	+	0.48	(0.476,0.515]	chr2	99760	308	INTRON	INTRON	CERS6	ENSG00000172292.15	ENST00000392687.4:ENST00000305747.11	protein_coding	protein_coding	protein_coding	protein_coding	2	29	2	2.23335	2.308885	2.38442	0.0634557	0.0417472	0.177047	0.161736
chr6	18218285	18218385	2827388	0	+	0.51	(0.476,0.515]	chr6	265559	4	SS5_PROX	SS5_PROX:INTRON	KDM1B	ENSG00000165097.16	ENST00000546309.6:ENST00000650836.2:ENST00000449850.2:ENST00000297792.9:ENST00000642162.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	29	2	2.23335	2.308885	2.38442	0.0634557	0.0417472	0.177047	0.161736
chr7	66708369	66708469	3325151	0	+	0.5	(0.476,0.515]	chr7	309221	228	INTRON	INTRON	RABGEF1	ENSG00000154710.18	ENST00000607882.5	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	2	29	2	2.23335	2.308885	2.38442	0.0634557	0.0417472	0.177047	0.161736
chr5	146175159	146175259	2747339	0	-	0.46	(0.44,0.476]	chr5	258893	20	INTRON	INTRON	LARS1	ENSG00000133706.19	ENST00000674174.1:ENST00000674170.1:ENST00000674479.1:ENST00000674309.1:ENST00000674218.1:ENST00000674467.1:ENST00000674290.1:ENST00000674447.1:ENST00000674270.1:ENST00000674383.1:ENST00000674191.1:ENST00000674158.1:ENST00000394434.7:ENST00000674398.1:ENST00000674277.1:ENST00000274562.13:ENST00000510191.5:ENST00000674310.1:ENST00000512412.2:ENST00000674417.1:ENST00000674450.1:ENST00000674412.1:ENST00000618084.2:ENST00000511505.5:ENST00000505223.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	95	2	1.76961	2.308805	2.848	0.00808024	0.00215274	0.0807319	0.0417866
chr2	36571996	36572096	1092542	0	-	0.32	(0.28,0.32]	chr2	117077	106	INTRON	INTRON	FEZ2	ENSG00000171055.15	ENST00000414288.5:ENST00000379245.8:ENST00000405912.8:ENST00000413938.5:ENST00000441005.5:ENST00000305852.11:ENST00000451623.5:ENST00000487282.5:ENST00000464964.1:ENST00000357996.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	81	2	2.29708	2.3087999999999997	2.32052	0.0195087	0.00612675	0.109483	0.0708525
chr2	175155551	175155651	1272215	0	-	0.31	(0.28,0.32]	chr2	134482	40	INTRON	INTRON	ATF2	ENSG00000115966.18	ENST00000345739.9:ENST00000426833.7:ENST00000264110.7:ENST00000409635.5:ENST00000428760.5:ENST00000392544.5:ENST00000417080.5:ENST00000456655.5:ENST00000421438.5:ENST00000429579.5:ENST00000415955.5:ENST00000409499.5:ENST00000435231.6:ENST00000437522.5:ENST00000409833.5:ENST00000413123.5:ENST00000445349.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	81	2	2.29708	2.3087999999999997	2.32052	0.0195087	0.00612675	0.109483	0.0708525
chr21	44789594	44789694	7468609	0	-	0.31	(0.28,0.32]	chr21	761177	11	INTRON	INTRON	UBE2G2	ENSG00000184787.19	ENST00000345496.7:ENST00000497630.5:ENST00000477954.5:ENST00000491513.5:ENST00000330942.9:ENST00000478200.1:ENST00000497664.5:ENST00000462569.5:ENST00000490450.5:ENST00000496395.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	50	2	1.81582	2.308695	2.80157	0.068122	0.0147132	0.184298	0.106558
chr5	149516323	149516420	2750723	0	-	0.28866000000000003	(0.28,0.32]	chr5	259049	2	INTRON	INTRON	CSNK1A1	ENSG00000113712.19	ENST00000261798.10:ENST00000377843.8:ENST00000657001.1:ENST00000515768.6:ENST00000606719.6:ENST00000657462.1:ENST00000661952.1:ENST00000504676.5:ENST00000515435.5:ENST00000662268.1:ENST00000657706.1:ENST00000606299.2:ENST00000670598.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	81	2	2.14534	2.308685	2.47203	0.0117054	0.0114089	0.0962115	0.0886611
chr4	55408023	55408123	1960711	0	+	0.4	(0.378,0.408]	chr4	196553	43	INTRON	INTRON	TMEM165	ENSG00000134851.13	ENST00000381334.10:ENST00000506198.5:ENST00000508404.5:ENST00000511710.1:ENST00000502797.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	51	2	2.22859	2.3086599999999997	2.38873	0.0458857	0.00763308	0.149888	0.0777238
chr5	146142156	146142256	2746982	0	-	0.46	(0.44,0.476]	chr5	258805	20	EXON_MRNA	EXON_MRNA:INTRON	LARS1	ENSG00000133706.19	ENST00000674174.1:ENST00000674170.1:ENST00000674479.1:ENST00000674309.1:ENST00000674218.1:ENST00000674467.1:ENST00000674290.1:ENST00000674447.1:ENST00000674270.1:ENST00000674383.1:ENST00000674191.1:ENST00000674158.1:ENST00000506231.6:ENST00000674471.1:ENST00000674181.1:ENST00000394434.7:ENST00000674398.1:ENST00000674277.1:ENST00000274562.13:ENST00000510191.5:ENST00000504323.6:ENST00000674310.1:ENST00000512412.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	17	208	2	1.98834	2.308655	2.62897	0.00292325	3.65354e-5	0.0481371	0.00484751
chr1	89862748	89862848	159943	0	+	0.39	(0.378,0.408]	chr1	17285	157	INTRON	INTRON	LRRC8D	ENSG00000171492.14	ENST00000525774.5:ENST00000337338.9:ENST00000394593.7:ENST00000532201.5:ENST00000414841.1:ENST00000527156.1:ENST00000441269.2	protein_coding	protein_coding	protein_coding	protein_coding	6	76	2	1.84831	2.30862	2.76893	0.0172621	0.00316735	0.111749	0.0503085
chr13	25312582	25312682	5457283	0	+	0.5	(0.476,0.515]	chr13	522896	3	SS3_PROX	SS3_PROX:INTRON	NUP58	ENSG00000139496.17	ENST00000481980.2:ENST00000490231.6:ENST00000695571.1:ENST00000477876.2:ENST00000695572.1:ENST00000463407.6:ENST00000695573.1:ENST00000381736.8:ENST00000695583.1:ENST00000465068.5:ENST00000466694.6:ENST00000381718.8:ENST00000695575.1:ENST00000695574.1:ENST00000495460.2:ENST00000381747.7:ENST00000695576.1:ENST00000394327.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	72	2	1.99457	2.308465	2.62236	0.009924	0.00517	0.0877296	0.0631506
chr3	15769995	15770094	1623540	0	-	0.30303	(0.28,0.32]	chr3	168009	33	INTRON	INTRON	ANKRD28	ENSG00000206560.12	ENST00000399451.6:ENST00000624145.3:ENST00000683139.1:ENST00000412318.5:ENST00000497037.5:ENST00000451422.1:ENST00000498524.5:ENST00000439830.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	83	2	1.31424	2.3084350000000002	3.30263	0.0580847	0.0038504	0.188651	0.0542786
chr7	121173934	121174034	3395508	0	+	0.32	(0.28,0.32]	chr7	317781	239	INTRON	INTRON	CPED1	ENSG00000106034.18	ENST00000310396.10:ENST00000450913.6:ENST00000423795.5:ENST00000466055.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	82	2	2.14002	2.3083650000000002	2.47671	0.0304107	0.00327955	0.130461	0.0527031
chrX	302865	302963	7605487	0	+	0.520408	(0.515,0.57]	chrX	779420	37	UTR3	UTR3:EXON_MRNA	PLCXD1	ENSG00000182378.15	ENST00000399012.6:ENST00000381657.8	protein_coding	protein_coding	protein_coding	protein_coding	19	186	2	1.59031	2.308345	3.02638	0.00567562	1.20716e-5	0.0678837	0.00276488
chr22	21866821	21866921	7561378	0	-	0.55	(0.515,0.57]	chr22	773389	1	SS5_PROX	SS5_PROX:INTRON	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	12	119	2	1.80997	2.308285	2.8066	0.00475864	2.14817e-4	0.0636201	0.0134211
chr7	152322121	152322220	3680150	0	-	0.515152	(0.476,0.515]	chr7	341641	64	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000684262.1:ENST00000682301.1:ENST00000452749.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	82	2	2.16055	2.308265	2.45598	0.00945755	0.00292015	0.0817766	0.0494641
chr1	25456552	25456652	48207	0	+	0.33	(0.32,0.35]	chr1	5939	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	MACO1	ENSG00000204178.11	ENST00000399766.7:ENST00000374343.5:ENST00000647928.1:ENST00000470035.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	14	195	2	2.30773	2.3081300000000002	2.30853	0.00247508	3.73464e-4	0.0446195	0.0174246
chr1	42957437	42957536	433134	0	-	0.545455	(0.515,0.57]	chr1	52506	27	INTRON	INTRON	SLC2A1	ENSG00000117394.24	ENST00000426263.10:ENST00000630287.2:ENST00000675112.1:ENST00000674765.1:ENST00000625233.2:ENST00000372500.4:ENST00000415851.6:ENST00000630821.1:ENST00000460369.3:ENST00000676097.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	18	185	2	2.26121	2.3081300000000002	2.35505	4.01765e-4	1.65574e-4	0.0185763	0.0111303
chr1	744825	744925	357414	0	-	0.28	[0,0.28]	chr1	41160	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	ENSG00000230021:ENSG00000228327	ENSG00000230021.10:ENSG00000228327.4	ENST00000634337.2:ENST00000635509.2:ENST00000506640.2	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene:transcribed_unprocessed_pseudogene	processed_transcript	8	146	2	1.86436	2.308085	2.75181	0.0134322	0.00205047	0.101281	0.0409264
chr1	110354875	110354975	182499	0	+	0.41	(0.408,0.44]	chr1	20251	66	INTRON	INTRON	LAMTOR5-AS1	ENSG00000224699.10	ENST00000626572.2	lncRNA	lncRNA	lncRNA	lncRNA	6	78	2	2.22268	2.308085	2.39349	0.00770925	0.00467273	0.0784002	0.0600108
chr1	176080052	176080152	590429	0	-	0.31	(0.28,0.32]	chr1	70908	334	INTRON	INTRON	COP1	ENSG00000143207.21	ENST00000367669.8:ENST00000367667.5:ENST00000461830.6:ENST00000367666.5:ENST00000649803.1:ENST00000308769.12:ENST00000459744.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	84	2	2.23223	2.30807	2.38391	0.0122525	0.0109124	0.0969406	0.0873034
chr3	43504222	43504322	1674256	0	-	0.44	(0.408,0.44]	chr3	170972	711	INTRON	INTRON	ANO10	ENSG00000160746.13	ENST00000292246.8:ENST00000350459.8:ENST00000396091.7:ENST00000414522.6:ENST00000451430.6:ENST00000448045.1	protein_coding	protein_coding	protein_coding	protein_coding	3	42	2	2.21857	2.3080350000000003	2.3975	0.040266	0.0209591	0.161534	0.112046
chr18	2722663	2722763	6865558	0	+	0.28	[0,0.28]	chr18	680047	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	SMCHD1	ENSG00000101596.17	ENST00000320876.11:ENST00000688342.1:ENST00000693213.1:ENST00000577880.5:ENST00000584897.5:ENST00000583441.2:ENST00000690757.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	57	2	1.812	2.30798	2.80396	0.0729149	0.0161429	0.189235	0.109464
chr3	15847184	15847284	1624319	0	-	0.25	[0,0.28]	chr3	168034	325	INTRON	INTRON	ANKRD28	ENSG00000206560.12	ENST00000399451.6:ENST00000412318.5:ENST00000439830.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	57	2	1.812	2.30798	2.80396	0.0729149	0.0161429	0.189235	0.109464
chr8	94844680	94844779	3800341	0	+	0.232323	[0,0.28]	chr8	352383	18	INTRON	INTRON	INTS8	ENSG00000164941.14	ENST00000523731.6:ENST00000524333.5:ENST00000523321.5:ENST00000343161.8:ENST00000523206.5:ENST00000520526.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	57	2	1.812	2.30798	2.80396	0.0729149	0.0161429	0.189235	0.109464
chr16	70403988	70404087	6511113	0	-	0.40404	(0.378,0.408]	chr16	630689	25	INTRON	INTRON	ST3GAL2	ENSG00000157350.13	ENST00000342907.3:ENST00000566097.1:ENST00000561708.1:ENST00000567586.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	91	2	2.18994	2.3079400000000003	2.42594	0.00448961	0.00428028	0.0612035	0.0574861
chr7	156639059	156639159	3685729	0	-	0.38	(0.378,0.408]	chr7	341963	8	EXON_LNCRNA	EXON_LNCRNA:INTRON	LINC01006	ENSG00000182648.14	ENST00000651649.1:ENST00000652322.1:ENST00000656672.1:ENST00000661405.1:ENST00000656928.1:ENST00000661595.1:ENST00000656505.1:ENST00000447933.7:ENST00000660473.1:ENST00000656837.1:ENST00000663891.1:ENST00000458645.5:ENST00000418309.1:ENST00000664734.1:ENST00000333319.6:ENST00000689604.1:ENST00000661282.1	lncRNA	lncRNA	lncRNA	lncRNA	4	55	2	2.00398	2.30793	2.61188	0.0393906	0.0047055	0.143072	0.0631419
chr8	109342489	109342589	3847550	0	+	0.38	(0.378,0.408]	chr8	354367	4	SS3_PROX	SS3_PROX:INTRON	ENY2	ENSG00000120533.13	ENST00000521662.5:ENST00000522766.5:ENST00000517311.5:ENST00000339942.11:ENST00000520147.5:ENST00000521688.6:ENST00000522407.5:ENST00000523335.1:ENST00000517756.5:ENST00000517350.5:ENST00000523707.1:ENST00000521619.1:ENST00000518118.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	55	2	2.00398	2.30793	2.61188	0.0393906	0.0047055	0.143072	0.0631419
chr16	23893259	23893358	6324333	0	+	0.464646	(0.44,0.476]	chr16	605700	4	EXON_LNCRNA	EXON_LNCRNA:INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000645517.1:ENST00000498739.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	139	2	2.06893	2.3079	2.54687	0.00145151	0.0011	0.0349797	0.030486
chr19	45526356	45526445	7080409	0	+	0.674157	(0.57,1]	chr19	708270	3	UTR3	UTR3:EXON_MRNA	VASP	ENSG00000125753.14	ENST00000245932.11:ENST00000586014.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	51	2	1.80424	2.3079	2.81156	0.0129439	3.95149e-4	0.0991015	0.0185763
chr1	246928237	246928337	681926	0	-	0.49	(0.476,0.515]	chr1	80043	95	INTRON	INTRON	AHCTF1	ENSG00000153207.16	ENST00000648844.2:ENST00000326225.3:ENST00000366508.5	protein_coding	protein_coding	protein_coding	protein_coding	8	102	2	2.10798	2.30788	2.50778	0.00628634	0.00128608	0.0722266	0.0328018
chr4	1724370	1724467	1910161	0	+	0.412371	(0.408,0.44]	chr4	191575	1	INTRON	INTRON	TACC3	ENSG00000013810.21	ENST00000458173.4:ENST00000651472.1:ENST00000612220.5:ENST00000484651.5:ENST00000313288.9:ENST00000467746.6:ENST00000493975.5:ENST00000652770.1:ENST00000651251.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	14	172	2	2.02926	2.307805	2.58635	0.00323143	1.07702e-4	0.0507087	0.00878438
chr5	38972855	38972954	2604622	0	-	0.232323	[0,0.28]	chr5	247847	5	INTRON	INTRON	RICTOR	ENSG00000164327.13	ENST00000357387.8:ENST00000511516.5:ENST00000296782.9:ENST00000510711.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	78	2	1.85666	2.307765	2.75887	0.0660997	0.00360252	0.181924	0.0552588
chr9	123263439	123263539	4340430	0	-	0.45	(0.44,0.476]	chr9	398963	261	INTRON	INTRON	STRBP	ENSG00000165209.19	ENST00000348403.10:ENST00000360998.3:ENST00000407982.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	24	284	2	2.28881	2.30773	2.32665	3.20926e-4	1.02596e-4	0.0165409	0.00857182
chr19	15308542	15308642	7147166	0	-	0.44	(0.408,0.44]	chr19	721965	282	INTRON	INTRON	BRD4	ENSG00000141867.19	ENST00000679869.1:ENST00000360016.9:ENST00000594841.5:ENST00000597315.5:ENST00000601941.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	14	156	2	1.8362	2.307685	2.77917	0.00297661	3.60351e-4	0.0501835	0.0175741
chr11	3678086	3678183	4893940	0	-	0.391753	(0.378,0.408]	chr11	458736	11	INTRON	INTRON	NUP98	ENSG00000110713.17	ENST00000533346.5:ENST00000359171.8:ENST00000324932.12:ENST00000650171.1:ENST00000355260.7:ENST00000429801.5:ENST00000469881.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	55	2	2.26009	2.30768	2.35527	0.0188651	0.0121511	0.108861	0.0963966
chr9	69181216	69181315	4138186	0	+	0.393939	(0.378,0.408]	chr9	377079	39	INTRON	INTRON	TJP2	ENSG00000119139.21	ENST00000643713.1:ENST00000606364.5:ENST00000648087.1:ENST00000423935.6:ENST00000647986.1:ENST00000636438.1:ENST00000377259.5:ENST00000377245.9:ENST00000348208.9:ENST00000649114.1:ENST00000649943.1:ENST00000636247.1:ENST00000650333.1:ENST00000650522.1:ENST00000649783.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	56	2	1.71374	2.30768	2.90162	0.0274158	0.0113157	0.136498	0.0886121
chr12	108691967	108692066	5406379	0	-	0.545455	(0.515,0.57]	chr12	516011	132	INTRON	INTRON	CORO1C	ENSG00000110880.11	ENST00000261401.8:ENST00000420959.6:ENST00000541050.5:ENST00000549384.5:ENST00000421578.6:ENST00000550542.5:ENST00000549772.5:ENST00000552871.5:ENST00000547294.5:ENST00000550032.5:ENST00000551550.5:ENST00000546571.5:ENST00000551044.1:ENST00000547170.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	55	2	1.69407	2.30761	2.92115	0.0459452	0.00110258	0.149888	0.03038
chr1	15874214	15874304	34927	0	+	0.366667	(0.35,0.378]	chr1	4262	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	SPEN	ENSG00000065526.12	ENST00000673875.1:ENST00000375759.8:ENST00000438066.1:ENST00000471538.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	88	2	1.88357	2.307605	2.73164	0.0100866	0.00387645	0.0884696	0.0543578
chr5	10385999	10386097	2317973	0	+	0.387755	(0.378,0.408]	chr5	224630	37	INTRON	INTRON	MARCHF6	ENSG00000145495.16	ENST00000274140.10:ENST00000449913.6:ENST00000502795.5:ENST00000511802.5:ENST00000503788.5:ENST00000640713.1:ENST00000510872.5:ENST00000507863.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	16	201	2	2.14745	2.30755	2.46765	0.00276839	8.22031e-5	0.0469265	0.00761395
chr2	107716702	107716802	1205716	0	-	0.37	(0.35,0.378]	chr2	128527	2	SS5_PROX	SS5_PROX:INTRON	LINC01885:ENSG00000286769	ENSG00000237880.2:ENSG00000286769.1	ENST00000654481.1:ENST00000669817.1	lncRNA	lncRNA	lncRNA	lncRNA	14	190	2	2.23815	2.3075400000000004	2.37693	9.1268e-4	7.25263e-4	0.0277839	0.0247646
chr15	90989118	90989218	6259610	0	-	0.38	(0.378,0.408]	chr15	597349	27	INTRON	INTRON	PRC1:ENSG00000284946	ENSG00000198901.14:ENSG00000284946.1	ENST00000394249.8:ENST00000361188.9:ENST00000643536.1:ENST00000442656.6:ENST00000647331.1:ENST00000553494.5:ENST00000557763.5:ENST00000417173.6:ENST00000560605.1:ENST00000557905.5:ENST00000555791.5:ENST00000555745.5:ENST00000559811.1:ENST00000556129.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	56	2	1.51223	2.307485	3.10274	0.051139	0.00586642	0.176696	0.0668095
chr7	130165870	130165967	3638348	0	-	0.484536	(0.476,0.515]	chr7	338341	13	UTR3	UTR3:EXON_MRNA	TMEM209	ENSG00000146842.17	ENST00000397622.7	protein_coding	protein_coding	protein_coding	protein_coding	4	47	2	1.91525	2.30746	2.69967	0.0232571	0.0195838	0.127416	0.109483
chr1	50925079	50925179	451904	0	-	0.35	(0.32,0.35]	chr1	54267	667	INTRON	INTRON	FAF1	ENSG00000185104.21	ENST00000396153.7:ENST00000487898.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	46	2	1.83416	2.307445	2.78073	0.0631198	0.01481	0.176946	0.106702
chr16	57188946	57189045	6361312	0	+	0.333333	(0.32,0.35]	chr16	610647	15	INTRON	INTRON	RSPRY1	ENSG00000159579.14	ENST00000562439.5:ENST00000564435.5:ENST00000562959.1:ENST00000568505.6:ENST00000566352.1:ENST00000394420.9:ENST00000537866.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	46	2	1.83416	2.307445	2.78073	0.0631198	0.01481	0.176946	0.106702
chr8	143312677	143312775	4081487	0	-	0.346939	(0.32,0.35]	chr8	370722	21	INTRON	INTRON	TOP1MT	ENSG00000184428.13	ENST00000519977.5:ENST00000329245.9:ENST00000521193.5:ENST00000519148.5:ENST00000523676.5	protein_coding	protein_coding	protein_coding	protein_coding	3	46	2	1.83416	2.307445	2.78073	0.0631198	0.01481	0.176946	0.106702
chr5	149495660	149495760	2750504	0	-	0.42	(0.408,0.44]	chr5	258992	28	UTR3	UTR3:EXON_MRNA	CSNK1A1:ENSG00000230551	ENSG00000113712.19:ENSG00000230551.4	ENST00000261798.10:ENST00000377843.8:ENST00000657001.1:ENST00000499521.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron	55	658	2	2.29897	2.307365	2.31576	6.84578e-5	1.89238e-5	0.00733336	0.00332716
chr2	96282216	96282315	1180273	0	-	0.525253	(0.515,0.57]	chr2	126232	4	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	SNRNP200	ENSG00000144028.15	ENST00000323853.10:ENST00000497539.5:ENST00000429650.1:ENST00000480242.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	55	2	2.15866	2.3072549999999996	2.45585	0.0100547	0.00797827	0.0848452	0.0798772
chr1	10149183	10149282	20312	0	+	0.333333	(0.32,0.35]	chr1	1951	1	CDS	CDS:EXON_MRNA	UBE4B	ENSG00000130939.20	ENST00000672724.1:ENST00000253251.12:ENST00000343090.11	protein_coding	protein_coding	protein_coding	protein_coding	8	103	2	1.8018	2.30721	2.81262	0.0103524	0.00311322	0.0896588	0.0498063
chr19	2789323	2789422	6997480	0	+	0.606061	(0.57,1]	chr19	693776	19	INTRON	INTRON	THOP1	ENSG00000172009.15	ENST00000307741.11:ENST00000585673.5:ENST00000585338.1:ENST00000586780.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	28	2	2.13445	2.3071900000000003	2.47993	0.0241482	0.007207	0.12011	0.0756278
chr19	19629572	19629669	7154723	0	-	0.587629	(0.57,1]	chr19	723293	2	UTR3	UTR3:EXON_MRNA	GMIP	ENSG00000089639.11	ENST00000203556.9	protein_coding	protein_coding	protein_coding	protein_coding	4	28	2	2.13445	2.3071900000000003	2.47993	0.0241482	0.007207	0.12011	0.0756278
chr4	56479149	56479248	1963040	0	+	0.464646	(0.44,0.476]	chr4	196958	1	INTRON	INTRON	SRP72	ENSG00000174780.17	ENST00000642900.1:ENST00000510663.6:ENST00000505314.2	protein_coding	protein_coding	protein_coding	protein_coding	7	87	2	2.25992	2.3071900000000003	2.35446	0.00536475	0.00324123	0.0642754	0.0524329
chr5	10393195	10393291	2318049	0	+	0.46875	(0.44,0.476]	chr5	224650	11	INTRON	INTRON	MARCHF6	ENSG00000145495.16	ENST00000274140.10:ENST00000449913.6:ENST00000511802.5:ENST00000503788.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	89	2	2.03034	2.307155	2.58397	0.0173569	6.72874e-4	0.104189	0.023543
chr11	67132273	67132373	4812576	0	+	0.43	(0.408,0.44]	chr11	448105	2	SS5_PROX	SS5_PROX:INTRON	KDM2A	ENSG00000173120.15	ENST00000529006.7:ENST00000398645.6:ENST00000532436.5:ENST00000527157.1:ENST00000308783.9	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	53	2	2.16746	2.3071	2.44674	0.024436	0.00868283	0.12011	0.0842798
chr7	121198526	121198626	3395754	0	+	0.46	(0.44,0.476]	chr7	317781	485	INTRON	INTRON	CPED1	ENSG00000106034.18	ENST00000310396.10:ENST00000450913.6:ENST00000423795.5:ENST00000466055.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	158	2	2.30297	2.3070950000000003	2.31122	0.0012225	5.48676e-4	0.0320622	0.0213049
chr1	95126780	95126880	166660	0	+	0.42	(0.408,0.44]	chr1	18098	52	INTRON	INTRON	TLCD4:TLCD4-RWDD3:ENSG00000231992	ENSG00000152078.10:ENSG00000271092.5:ENSG00000231992.1	ENST00000370203.9:ENST00000456991.5:ENST00000604534.5:ENST00000455656.1:ENST00000434207.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	7	81	2	1.9279	2.30706	2.68622	0.00807087	0.00418848	0.0806514	0.0572071
chr22	21866321	21866421	7561373	0	-	0.53	(0.515,0.57]	chr22	773388	581	INTRON	INTRON	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	34	347	2	2.26131	2.3070500000000003	2.35279	7.1716e-5	3.91765e-5	0.00761173	0.00506398
chr1	50958871	50958971	452242	0	-	0.36	(0.35,0.378]	chr1	54267	1005	INTRON	INTRON	FAF1	ENSG00000185104.21	ENST00000396153.7:ENST00000487898.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	43	2	1.81767	2.30705	2.79643	0.0640429	0.013543	0.177882	0.101363
chr1	167946318	167946418	248585	0	+	0.36	(0.35,0.378]	chr1	29536	87	INTRON	INTRON	DCAF6	ENSG00000143164.16	ENST00000450548.5:ENST00000470919.5:ENST00000432587.6:ENST00000367843.7:ENST00000470721.5:ENST00000367840.4:ENST00000312263.10:ENST00000455334.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	43	2	1.81767	2.30705	2.79643	0.0640429	0.013543	0.177882	0.101363
chr12	123386863	123386961	5242598	0	+	0.510204	(0.476,0.515]	chr12	498168	23	INTRON	INTRON	KMT5A	ENSG00000183955.14	ENST00000402868.8:ENST00000437519.5:ENST00000537270.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	81	2	2.07252	2.307045	2.54157	0.00697457	0.00436163	0.0718189	0.060356
chr9	130767954	130768054	4214404	0	+	0.25	[0,0.28]	chr9	386427	531	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000393293.4	protein_coding	protein_coding	protein_coding	protein_coding	4	68	2	1.88025	2.307045	2.73384	0.029906	0.0246308	0.142135	0.12011
chr3	33663144	33663244	1653452	0	-	0.32	(0.28,0.32]	chr3	169653	3	SS5_PROX	SS5_PROX:INTRON	CLASP2	ENSG00000163539.18	ENST00000399362.8:ENST00000682230.1:ENST00000468888.6:ENST00000359576.9	protein_coding	protein_coding	protein_coding	protein_coding	6	96	2	2.18092	2.3070399999999998	2.43316	0.0271832	0.00186476	0.123904	0.0399675
chr1	42687535	42687634	83994	0	+	0.474747	(0.44,0.476]	chr1	11020	37	INTRON	INTRON	YBX1	ENSG00000065978.19	ENST00000321358.12:ENST00000332220.10:ENST00000436427.1:ENST00000467957.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	146	2	2.0432	2.307035	2.57087	0.00226364	5.18452e-4	0.0437013	0.0209322
chr11	47505569	47505667	4949921	0	-	0.479592	(0.476,0.515]	chr11	464224	43	INTRON	INTRON	CELF1	ENSG00000149187.19	ENST00000310513.10:ENST00000687097.1:ENST00000531165.5:ENST00000532048.5:ENST00000530151.5:ENST00000525841.5:ENST00000528434.5:ENST00000543178.5:ENST00000526419.1:ENST00000528538.5:ENST00000526277.1	protein_coding	protein_coding	protein_coding	protein_coding	7	80	2	1.80755	2.30703	2.80651	0.0131326	0.00250121	0.0999551	0.0446195
chr6	89831149	89831244	2916456	0	+	0.326316	(0.32,0.35]	chr6	275597	12	EXON_MRNA	EXON_MRNA:INTRON	CASP8AP2	ENSG00000118412.13	ENST00000552401.5:ENST00000419040.6:ENST00000547893.5:ENST00000237177.10:ENST00000551025.4:ENST00000548224.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	88	2	2.02647	2.3070000000000004	2.58753	0.0116933	0.00560122	0.0892647	0.0678837
chr1	52074307	52074406	101438	0	+	0.444444	(0.44,0.476]	chr1	13441	26	INTRON	INTRON	BTF3L4	ENSG00000134717.18	ENST00000477828.6:ENST00000489308.6:ENST00000526132.5:ENST00000313334.13:ENST00000472944.6:ENST00000484036.1:ENST00000533836.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	39	2	2.0776	2.307	2.5364	0.0309324	0.0292951	0.141862	0.13151
chr4	128286936	128287020	2238766	0	-	0.47619	(0.44,0.476]	chr4	219141	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PGRMC2	ENSG00000164040.18	ENST00000613358.4:ENST00000520121.6:ENST00000296425.10:ENST00000512483.5:ENST00000509070.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	39	2	2.0776	2.307	2.5364	0.0309324	0.0292951	0.141862	0.13151
chr21	33524386	33524480	7441204	0	-	0.489362	(0.476,0.515]	chr21	759442	5	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	GART	ENSG00000159131.17	ENST00000381839.7:ENST00000381831.7:ENST00000424203.5:ENST00000381815.9:ENST00000460305.1:ENST00000467575.1:ENST00000361093.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	31	379	2	2.21505	2.306945	2.39884	1.69345e-4	6.39936e-5	0.0112926	0.00711194
chr2	32438716	32438813	731607	0	+	0.474227	(0.44,0.476]	chr2	84353	22	INTRON	INTRON	BIRC6	ENSG00000115760.15	ENST00000421745.7:ENST00000648282.1:ENST00000444173.5:ENST00000431454.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	47	2	1.87325	2.30694	2.74063	0.0265709	0.0176095	0.134088	0.105143
chr5	54098532	54098632	2618792	0	-	0.45	(0.44,0.476]	chr5	248841	226	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	147	2	1.86551	2.30692	2.74833	0.00317041	4.07917e-4	0.051761	0.0185763
chr5	138020530	138020607	2730679	0	-	0.207792	[0,0.28]	chr5	257011	1	SS5_PROX	SS5_PROX:INTRON	FAM13B	ENSG00000031003.11	ENST00000689681.1:ENST00000033079.7:ENST00000425075.6:ENST00000420893.6:ENST00000514310.5:ENST00000502471.5:ENST00000509596.5:ENST00000508403.5:ENST00000505961.1	protein_coding	protein_coding	protein_coding	protein_coding	4	68	2	1.71402	2.30692	2.89982	0.047753	0.0158893	0.170327	0.101453
chr10	69325352	69325451	4445941	0	+	0.444444	(0.44,0.476]	chr10	410222	58	INTRON	INTRON	HK1	ENSG00000156515.24	ENST00000436817.6:ENST00000360289.6:ENST00000448642.6:ENST00000480047.5:ENST00000450646.6:ENST00000483077.5:ENST00000464803.6:ENST00000476368.6:ENST00000643399.2:ENST00000483054.5:ENST00000421088.5:ENST00000298649.8:ENST00000359426.7:ENST00000493591.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	39	2	2.00609	2.306915	2.60774	0.0360127	0.0255874	0.152355	0.120269
chr18	57579054	57579154	6980398	0	-	0.47	(0.44,0.476]	chr18	690628	53	INTRON	INTRON	FECH	ENSG00000066926.13	ENST00000262093.11:ENST00000652755.1:ENST00000651787.1:ENST00000382873.8:ENST00000585494.5:ENST00000682485.1:ENST00000592699.6:ENST00000585699.1:ENST00000585747.1:ENST00000585878.1:ENST00000592111.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	39	2	2.00609	2.306915	2.60774	0.0360127	0.0255874	0.152355	0.120269
chr7	75412588	75412688	3338213	0	+	0.46	(0.44,0.476]	chr7	310812	4	SS3_PROX	SS3_PROX:INTRON	NSUN5P1	ENSG00000223705.10	ENST00000691741.1:ENST00000687920.1:ENST00000393633.6:ENST00000687621.1:ENST00000689022.1:ENST00000691865.1:ENST00000688076.1:ENST00000693166.1:ENST00000457988.5:ENST00000689132.1:ENST00000691132.1:ENST00000692954.1:ENST00000455158.5:ENST00000421140.6:ENST00000693244.1:ENST00000422386.5:ENST00000464979.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	3	39	2	2.00609	2.306915	2.60774	0.0360127	0.0255874	0.152355	0.120269
chr6	4789304	4789404	2790991	0	+	0.61	(0.57,1]	chr6	263598	121	INTRON	INTRON	CDYL	ENSG00000153046.18	ENST00000328908.9:ENST00000491864.1:ENST00000440139.5:ENST00000483019.1:ENST00000397588.8:ENST00000472453.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	42	2	2.17026	2.3069100000000002	2.44356	0.0220522	0.00109465	0.123836	0.0304174
chr8	140527347	140527447	4075454	0	-	0.41	(0.408,0.44]	chr8	370170	73	UTR3	UTR3:EXON_MRNA	AGO2	ENSG00000123908.12	ENST00000220592.10	protein_coding	protein_coding	protein_coding	protein_coding	6	77	2	2.2644	2.3069	2.3494	0.00768371	0.00462504	0.0753803	0.062717
chr1	21162266	21162366	393484	0	-	0.47	(0.44,0.476]	chr1	46836	493	INTRON	INTRON	EIF4G3	ENSG00000075151.24	ENST00000374935.7:ENST00000602326.6:ENST00000685872.1:ENST00000686579.1:ENST00000688741.1:ENST00000400422.6:ENST00000634879.2:ENST00000693470.1:ENST00000685814.1:ENST00000356916.7:ENST00000682284.1:ENST00000438975.5:ENST00000411888.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	47	2	1.69402	2.30676	2.9195	0.0456129	0.0102021	0.164236	0.0850389
chr2	62363741	62363841	790967	0	+	0.45	(0.44,0.476]	chr2	88716	17	INTRON	INTRON	ENSG00000228541	ENSG00000228541.2	ENST00000689590.1:ENST00000687402.1	lncRNA	lncRNA	lncRNA	lncRNA	4	47	2	1.69402	2.30676	2.9195	0.0456129	0.0102021	0.164236	0.0850389
chr6	7131958	7132057	2798605	0	+	0.454545	(0.44,0.476]	chr6	263723	229	INTRON	INTRON	RREB1	ENSG00000124782.21	ENST00000379933.7:ENST00000491191.5:ENST00000471433.5:ENST00000379938.7:ENST00000467782.5:ENST00000349384.10:ENST00000334984.10:ENST00000475946.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	47	2	1.69402	2.30676	2.9195	0.0456129	0.0102021	0.164236	0.0850389
chr1	235320216	235320316	663783	0	-	0.51	(0.476,0.515]	chr1	78552	591	INTRON	INTRON	ARID4B	ENSG00000054267.22	ENST00000349213.7:ENST00000366603.6:ENST00000264183.9:ENST00000421364.5:ENST00000491632.5:ENST00000418304.1:ENST00000466653.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	55	2	1.91368	2.306675	2.69967	0.0195838	0.0135123	0.109483	0.101363
chr7	883919	884014	3269183	0	+	0.673684	(0.57,1]	chr7	303675	5	UTR5	UTR5:EXON_MRNA:INTRON	SUN1:GET4	ENSG00000164828.18:ENSG00000239857.7	ENST00000457861.1:ENST00000265857.8:ENST00000412734.6:ENST00000407192.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	13	80	2	2.28526	2.3066649999999997	2.32807	9.96313e-4	2.69373e-4	0.0288906	0.0145437
chr7	128753661	128753761	3408524	0	+	0.26	[0,0.28]	chr7	318435	45	INTRON	INTRON	CALU	ENSG00000128595.17	ENST00000535011.6:ENST00000542996.6:ENST00000249364.9:ENST00000449187.6:ENST00000479257.5	protein_coding	protein_coding	protein_coding	protein_coding	5	93	2	1.91746	2.30663	2.6958	0.0323084	0.00456758	0.132921	0.0622215
chr3	177180195	177180295	1872276	0	-	0.42	(0.408,0.44]	chr3	187438	89	INTRON	INTRON	TBL1XR1	ENSG00000177565.18	ENST00000457928.7:ENST00000430069.5:ENST00000673974.1:ENST00000352800.10:ENST00000422442.6:ENST00000428970.5:ENST00000424913.5:ENST00000437738.5:ENST00000431421.5:ENST00000635794.1:ENST00000630796.2:ENST00000450267.5:ENST00000630833.2:ENST00000431674.5:ENST00000422066.5:ENST00000443315.5:ENST00000627825.2:ENST00000427349.5:ENST00000413084.5:ENST00000637137.1:ENST00000491623.2:ENST00000637544.1:ENST00000636187.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	89	2	1.57433	2.306575	3.03882	0.0229059	9.66897e-4	0.12581	0.0282401
chr9	130887376	130887475	4215607	0	+	0.525253	(0.515,0.57]	chr9	386487	18	UTR3	UTR3:EXON_MRNA	ABL1	ENSG00000097007.19	ENST00000318560.6	protein_coding	protein_coding	protein_coding	protein_coding	9	96	2	2.01561	2.30653	2.59745	0.00518674	6.62645e-4	0.0654085	0.0234815
chr1	213002833	213002933	634962	0	-	0.51	(0.476,0.515]	chr1	75009	7	INTRON	INTRON	ANGEL2	ENSG00000174606.14	ENST00000366962.8:ENST00000360506.6:ENST00000535388.2	protein_coding	protein_coding	protein_coding	protein_coding	16	193	2	2.07503	2.3065100000000003	2.53799	0.00107969	2.29704e-4	0.0300133	0.0139078
chr17	31942469	31942567	6595731	0	+	0.459184	(0.44,0.476]	chr17	641548	16	INTRON	INTRON	SUZ12	ENSG00000178691.11	ENST00000322652.10:ENST00000580398.1	protein_coding	protein_coding	protein_coding	protein_coding	8	88	2	1.86755	2.306505	2.74546	0.00715715	0.00326603	0.0756118	0.0508595
chr7	23363872	23363972	3502594	0	-	0.38	(0.378,0.408]	chr7	326877	8	INTRON	INTRON	IGF2BP3	ENSG00000136231.14	ENST00000258729.8:ENST00000421467.6:ENST00000468263.5:ENST00000492771.5:ENST00000479504.5:ENST00000466809.6:ENST00000491719.5:ENST00000465058.5:ENST00000469723.5:ENST00000474105.5:ENST00000476938.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	49	2	1.65821	2.3064	2.95459	0.0506302	0.00957623	0.17547	0.0820838
chr9	96900720	96900820	4297853	0	-	0.38	(0.378,0.408]	chr9	395215	22	INTRON	INTRON	MFSD14C	ENSG00000196312.15	ENST00000647176.1:ENST00000637409.1:ENST00000506067.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	4	49	2	1.65821	2.3064	2.95459	0.0506302	0.00957623	0.17547	0.0820838
chr13	45175597	45175697	5478829	0	+	0.43	(0.408,0.44]	chr13	524950	234	INTRON	INTRON	GTF2F2	ENSG00000188342.12	ENST00000340473.8	protein_coding	protein_coding	protein_coding	protein_coding	4	48	2	1.58763	2.30638	3.02513	0.0639217	0.0059965	0.177824	0.0700606
chr2	37076610	37076710	1095727	0	-	0.28	[0,0.28]	chr2	117420	3	SS5_PROX	SS5_PROX:INTRON	HEATR5B	ENSG00000008869.12	ENST00000233099.6	protein_coding	protein_coding	protein_coding	protein_coding	4	77	2	1.98291	2.30638	2.62985	0.0494143	0.00581422	0.156195	0.068681
chr11	600185	600284	4719817	0	+	0.393939	(0.378,0.408]	chr11	436204	13	INTRON	INTRON	PHRF1	ENSG00000070047.13	ENST00000264555.10:ENST00000416188.3:ENST00000534320.5:ENST00000413872.6:ENST00000533464.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	56	2	2.17608	2.306325	2.43657	0.0218783	0.0106733	0.123836	0.0861859
chr12	4559184	4559280	5067955	0	+	0.354167	(0.35,0.378]	chr12	478375	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	RAD51AP1	ENSG00000111247.15	ENST00000228843.13:ENST00000352618.9:ENST00000442992.6:ENST00000535558.5:ENST00000544931.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	96	2	1.78162	2.30632	2.83102	0.0251606	5.35542e-4	0.12011	0.0209215
chr4	48831731	48831831	1958218	0	+	0.37	(0.35,0.378]	chr4	196203	2	SS5_PROX	SS5_PROX:INTRON	OCIAD1	ENSG00000109180.15	ENST00000504654.5:ENST00000509122.5:ENST00000505922.6:ENST00000509664.5:ENST00000514981.5:ENST00000512981.5:ENST00000507210.5:ENST00000508996.5:ENST00000511662.5:ENST00000396448.6:ENST00000512236.5:ENST00000509164.5:ENST00000381473.7:ENST00000511102.5:ENST00000264312.12:ENST00000444354.6:ENST00000509963.5:ENST00000509246.5:ENST00000506801.5:ENST00000503016.5:ENST00000510824.5:ENST00000507546.5:ENST00000513641.5:ENST00000425583.6:ENST00000508293.5:ENST00000513391.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	98	2	2.0519	2.306305	2.56071	0.00725312	0.00332946	0.072984	0.0528877
chr7	157385839	157385936	3455808	0	+	0.298969	(0.28,0.32]	chr7	323116	3	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	DNAJB6	ENSG00000105993.15	ENST00000429029.6:ENST00000262177.9:ENST00000459889.5:ENST00000443280.5:ENST00000634080.1:ENST00000465908.5:ENST00000487480.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	112	2	1.842	2.306185	2.7703700000000002	0.023346	8.96564e-4	0.118323	0.0273866
chr10	18547811	18547911	4569669	0	-	0.38	(0.378,0.408]	chr10	421477	3	SS5_PROX	SS5_PROX:INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7:ENST00000493816.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	41	2	1.8252	2.3061249999999998	2.78705	0.0619563	0.0135539	0.174514	0.101363
chr3	128753738	128753838	1497486	0	+	0.39	(0.378,0.408]	chr3	156330	270	INTRON	INTRON	RAB7A	ENSG00000075785.14	ENST00000676214.1:ENST00000675864.1:ENST00000675712.1:ENST00000676425.1:ENST00000490093.6:ENST00000675342.1:ENST00000265062.8:ENST00000674748.1:ENST00000493186.6:ENST00000482525.5:ENST00000491681.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	41	2	1.8252	2.3061249999999998	2.78705	0.0619563	0.0135539	0.174514	0.101363
chr6	87540423	87540523	3152130	0	-	0.31	(0.28,0.32]	chr6	294021	52	INTRON	INTRON	RARS2	ENSG00000146282.19	ENST00000691533.1:ENST00000493269.2:ENST00000685069.1:ENST00000691725.1:ENST00000369536.10:ENST00000693431.1:ENST00000685408.1:ENST00000693327.1:ENST00000691205.1:ENST00000689174.1:ENST00000692684.1:ENST00000686988.1:ENST00000690622.1:ENST00000689206.1:ENST00000688532.1:ENST00000686154.1:ENST00000686407.1:ENST00000685701.1:ENST00000689561.1:ENST00000691238.1:ENST00000685336.1:ENST00000686284.1:ENST00000687586.1:ENST00000685376.1:ENST00000685881.1:ENST00000691815.1:ENST00000687090.1:ENST00000451155.2:ENST00000687437.1:ENST00000692394.1:ENST00000687729.1:ENST00000693605.1:ENST00000687909.1:ENST00000688391.1:ENST00000690884.1:ENST00000692843.1:ENST00000684790.1:ENST00000692270.1:ENST00000685219.1:ENST00000689952.1:ENST00000687579.1:ENST00000686857.1:ENST00000690205.1:ENST00000690705.1:ENST00000686142.1:ENST00000688106.1:ENST00000686196.1:ENST00000688842.1:ENST00000687078.1:ENST00000690555.1:ENST00000692934.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	81	2	2.1076	2.3061100000000003	2.50462	0.0133585	0.0102735	0.100772	0.0850389
chr2	182999288	182999386	1285633	0	-	0.357143	(0.35,0.378]	chr2	135406	31	INTRON	INTRON	NCKAP1	ENSG00000061676.15	ENST00000361354.9:ENST00000360982.2	protein_coding	protein_coding	protein_coding	protein_coding	3	43	2	2.2877	2.3060650000000003	2.32443	0.0544216	0.0155765	0.164972	0.109411
chr3	143007233	143007332	1529129	0	+	0.353535	(0.35,0.378]	chr3	159324	45	INTRON	INTRON	U2SURP	ENSG00000163714.18	ENST00000600150.5:ENST00000488497.7:ENST00000493782.5:ENST00000473835.7:ENST00000461591.5:ENST00000493598.6:ENST00000463563.6:ENST00000470400.5:ENST00000465175.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	43	2	2.2877	2.3060650000000003	2.32443	0.0544216	0.0155765	0.164972	0.109411
chr14	19062866	19062966	5655023	0	+	0.35	(0.32,0.35]	chr14	538984	4	SS5_PROX	SS5_PROX:INTRON	DUXAP9	ENSG00000225210.10	ENST00000549484.5:ENST00000547220.5:ENST00000610585.4:ENST00000621361.4:ENST00000620237.1:ENST00000619938.1:ENST00000644980.1:ENST00000619210.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	4	62	2	2.30476	2.306035	2.30731	0.0176772	0.0151817	0.108535	0.10525
chr10	103430152	103430251	4516567	0	+	0.474747	(0.44,0.476]	chr10	416465	24	INTRON	INTRON	PDCD11	ENSG00000148843.15	ENST00000369797.8:ENST00000649849.1	protein_coding	protein_coding	protein_coding	protein_coding	4	53	2	2.27304	2.306015	2.33899	0.0158915	0.0142027	0.109464	0.0959987
chr3	38483629	38483728	1400557	0	+	0.464646	(0.44,0.476]	chr3	146944	4	UTR3	UTR3:EXON_MRNA	ACVR2B	ENSG00000114739.14	ENST00000352511.5	protein_coding	protein_coding	protein_coding	protein_coding	4	53	2	2.27304	2.306015	2.33899	0.0158915	0.0142027	0.109464	0.0959987
chr8	55923552	55923652	3754772	0	+	0.56	(0.515,0.57]	chr8	349249	431	INTRON	INTRON	LYN	ENSG00000254087.8	ENST00000519728.6:ENST00000520220.6	protein_coding	protein_coding	protein_coding	protein_coding	5	47	2	1.48539	2.30601	3.12663	0.0553982	0.00374498	0.165463	0.0562234
chr21	22271606	22271706	7385084	0	+	0.4	(0.378,0.408]	chr21	752727	584	INTRON	INTRON	ENSG00000226043	ENSG00000226043.2	ENST00000667099.1:ENST00000654607.1:ENST00000444130.1	lncRNA	lncRNA	lncRNA	lncRNA	5	66	2	2.26009	2.305885	2.35168	0.0188651	0.0046563	0.108861	0.0629753
chr16	3702127	3702227	6434321	0	-	0.45	(0.44,0.476]	chr16	619370	108	INTRON	INTRON	TRAP1	ENSG00000126602.11	ENST00000246957.10:ENST00000538171.5:ENST00000571804.5:ENST00000574941.5:ENST00000576106.5:ENST00000571011.1:ENST00000570403.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	50	2	1.94723	2.30578	2.66433	0.0227424	0.0194358	0.119831	0.117618
chr2	110671465	110671564	1206802	0	-	0.333333	(0.32,0.35]	chr2	128720	5	INTRON	INTRON	BUB1	ENSG00000169679.15	ENST00000302759.11:ENST00000535254.6:ENST00000409311.5:ENST00000466333.5:ENST00000666956.1:ENST00000465029.5:ENST00000447014.5:ENST00000420328.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	46	2	2.30476	2.305745	2.30673	0.0584434	0.0151817	0.167723	0.108535
chr3	197122392	197122490	1901728	0	-	0.336735	(0.32,0.35]	chr3	190571	25	INTRON	INTRON	DLG1	ENSG00000075711.21	ENST00000667157.1:ENST00000346964.6:ENST00000656428.1:ENST00000663148.1:ENST00000655488.1:ENST00000357674.9:ENST00000671185.1:ENST00000658701.1:ENST00000667104.1:ENST00000661336.1:ENST00000669565.1:ENST00000670455.1:ENST00000656087.1:ENST00000670366.1:ENST00000653583.1:ENST00000653795.1:ENST00000671246.1:ENST00000661453.1:ENST00000665728.1:ENST00000664564.1:ENST00000653331.1:ENST00000660432.1:ENST00000660898.1:ENST00000657381.1:ENST00000659221.1:ENST00000654737.1:ENST00000669332.1:ENST00000659716.1:ENST00000660553.1:ENST00000664991.1:ENST00000419354.5:ENST00000661440.1:ENST00000667971.1:ENST00000670935.1:ENST00000668578.1:ENST00000666007.1:ENST00000661229.1:ENST00000660237.1:ENST00000657098.1:ENST00000661013.1:ENST00000436682.6:ENST00000452595.5:ENST00000662727.1:ENST00000422288.6:ENST00000448528.6:ENST00000443183.5:ENST00000656944.1:ENST00000392382.6:ENST00000450955.5:ENST00000658155.1:ENST00000669714.1:ENST00000654733.1:ENST00000469073.2:ENST00000419227.5:ENST00000392381.7:ENST00000471733.5:ENST00000419553.6:ENST00000447466.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	46	2	2.30476	2.305745	2.30673	0.0584434	0.0151817	0.167723	0.108535
chr4	144019287	144019380	2251751	0	-	0.451613	(0.44,0.476]	chr4	220002	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	GYPB	ENSG00000250361.9	ENST00000502664.6:ENST00000506679.5:ENST00000429670.3:ENST00000507009.5:ENST00000513128.5:ENST00000505583.5:ENST00000506516.6:ENST00000513557.5:ENST00000513677.5:ENST00000511198.5:ENST00000504951.6:ENST00000510196.6:ENST00000503255.5:ENST00000508618.5:ENST00000508841.1:ENST00000642935.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	88	2	2.10892	2.30574	2.50256	0.0132897	0.00102082	0.0944742	0.0294041
chr15	89093131	89093231	6094612	0	+	0.38	(0.378,0.408]	chr15	579964	1	SS3_PROX	SS3_PROX:INTRON	ABHD2	ENSG00000140526.18	ENST00000569411.5:ENST00000569550.5:ENST00000564876.5:ENST00000565066.5:ENST00000565973.5:ENST00000352732.10:ENST00000565825.5:ENST00000562254.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	66	2	2.09402	2.305675	2.51733	0.0126438	0.00808319	0.0982897	0.0766625
chr19	16842068	16842168	7027495	0	+	0.44	(0.408,0.44]	chr19	699475	1	SS5_PROX	SS5_PROX:INTRON	SIN3B	ENSG00000127511.10	ENST00000248054.10:ENST00000379803.5:ENST00000596802.5:ENST00000596638.1	protein_coding	protein_coding	protein_coding	protein_coding	3	40	2	2.27698	2.305645	2.33431	0.0583528	0.0129219	0.167723	0.0990564
chr20	34902817	34902917	7261248	0	+	0.43	(0.408,0.44]	chr20	737651	88	INTRON	INTRON	ACSS2	ENSG00000131069.20	ENST00000481971.5:ENST00000488172.5:ENST00000497927.5:ENST00000481284.5:ENST00000475459.6:ENST00000484354.1:ENST00000480274.1:ENST00000477932.5:ENST00000473172.5:ENST00000493805.6:ENST00000480978.5:ENST00000360596.7:ENST00000467019.5:ENST00000253382.5:ENST00000476922.5:ENST00000464399.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	40	2	2.27698	2.305645	2.33431	0.0583528	0.0129219	0.167723	0.0990564
chr4	87203469	87203568	2198351	0	-	0.434343	(0.408,0.44]	chr4	215724	74	INTRON	INTRON	KLHL8	ENSG00000145332.14	ENST00000273963.10:ENST00000498875.6:ENST00000425278.6:ENST00000506985.5:ENST00000512111.1:ENST00000505388.5:ENST00000504029.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	40	2	2.27698	2.305645	2.33431	0.0583528	0.0129219	0.167723	0.0990564
chr2	55043815	55043915	1121343	0	-	0.42	(0.408,0.44]	chr2	120163	152	INTRON	INTRON	RTN4	ENSG00000115310.19	ENST00000404909.5:ENST00000394611.6:ENST00000317610.11:ENST00000357732.8:ENST00000337526.11:ENST00000357376.7:ENST00000405240.5:ENST00000438462.1:ENST00000427710.5	protein_coding	protein_coding	protein_coding	protein_coding	15	193	2	1.85567	2.3056200000000002	2.75557	0.0090746	1.53284e-5	0.080809	0.00293915
chr22	16634647	16634746	7473693	0	+	0.383838	(0.378,0.408]	chr22	762000	114	INTRON	INTRON	TPTEP1	ENSG00000100181.22	ENST00000558085.6:ENST00000400593.6:ENST00000426585.5:ENST00000383140.7	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	5	66	2	1.90812	2.30555	2.70298	0.0264295	0.00325723	0.122506	0.0524329
chr16	11907023	11907122	6446322	0	-	0.313131	(0.28,0.32]	chr16	621130	30	INTRON	INTRON	GSPT1	ENSG00000103342.13	ENST00000434724.7:ENST00000439887.6:ENST00000420576.6:ENST00000568849.5:ENST00000562169.1	protein_coding	protein_coding	protein_coding	protein_coding	4	68	2	1.86684	2.30551	2.74418	0.0605813	0.00328589	0.171122	0.0527031
chr17	76267641	76267739	6677159	0	+	0.428571	(0.408,0.44]	chr17	652074	13	INTRON	INTRON	UBALD2	ENSG00000185262.9	ENST00000327490.8:ENST00000587913.1:ENST00000589240.1	protein_coding	protein_coding	protein_coding	protein_coding	15	180	2	1.90931	2.30548	2.70165	0.0034706	8.82201e-5	0.052042	0.0079097
chr17	31952275	31952375	6595830	0	+	0.49	(0.476,0.515]	chr17	641554	42	INTRON	INTRON	SUZ12	ENSG00000178691.11	ENST00000322652.10:ENST00000580398.1	protein_coding	protein_coding	protein_coding	protein_coding	3	40	2	2.23335	2.30533	2.37731	0.0634557	0.0111793	0.177047	0.0937192
chr22	18569694	18569794	7551049	0	-	0.49	(0.476,0.515]	chr22	771829	168	INTRON	INTRON	PI4KAP1	ENSG00000274602.5	ENST00000612500.4:ENST00000611748.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	3	40	2	2.23335	2.30533	2.37731	0.0634557	0.0111793	0.177047	0.0937192
chr1	50901185	50901285	451665	0	-	0.43	(0.408,0.44]	chr1	54267	428	INTRON	INTRON	FAF1	ENSG00000185104.21	ENST00000396153.7:ENST00000487898.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	53	2	2.05947	2.30525	2.55103	0.0333232	0.00587353	0.134145	0.0690758
chr1	203813405	203813505	296858	0	+	0.23	[0,0.28]	chr1	34134	100	INTRON	INTRON	ZC3H11A:ZBED6	ENSG00000058673.17:ENSG00000257315.3	ENST00000367210.3:ENST00000453771.5:ENST00000432282.5:ENST00000638800.1:ENST00000367214.5:ENST00000639812.1:ENST00000367212.7:ENST00000332127.8:ENST00000550078.2:ENST00000495527.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	69	2	2.06426	2.30525	2.54624	0.0388449	0.0168952	0.143072	0.110899
chr19	21733984	21734084	7158962	0	-	0.44	(0.408,0.44]	chr19	723706	56	INTRON	INTRON	ZNF100	ENSG00000197020.12	ENST00000358296.11:ENST00000305570.10:ENST00000594401.1	protein_coding	protein_coding	protein_coding	protein_coding	4	53	2	2.05947	2.30525	2.55103	0.0333232	0.00587353	0.134145	0.0690758
chr7	140816888	140816988	3662650	0	-	0.42	(0.408,0.44]	chr7	340085	75	INTRON	INTRON	BRAF	ENSG00000157764.14	ENST00000496384.7:ENST00000644969.2:ENST00000644120.1:ENST00000646891.1:ENST00000644905.1:ENST00000642228.1:ENST00000288602.11:ENST00000646730.1:ENST00000497784.2:ENST00000642272.1:ENST00000642808.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	53	2	2.05947	2.30525	2.55103	0.0333232	0.00587353	0.134145	0.0690758
chr8	41711266	41711365	3938184	0	-	0.434343	(0.408,0.44]	chr8	361043	19	INTRON	INTRON	ANK1	ENSG00000029534.21	ENST00000347528.8:ENST00000265709.13:ENST00000289734.13	protein_coding	protein_coding	protein_coding	protein_coding	4	53	2	2.05947	2.30525	2.55103	0.0333232	0.00587353	0.134145	0.0690758
chr12	112084408	112084507	5415179	0	-	0.343434	(0.32,0.35]	chr12	517230	29	INTRON	INTRON	NAA25	ENSG00000111300.10	ENST00000261745.9:ENST00000552527.5:ENST00000549711.5:ENST00000551858.1:ENST00000547133.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	46	2	1.81328	2.305175	2.79707	0.0615716	0.0170923	0.193423	0.104099
chr22	40052384	40052484	7516923	0	+	0.33	(0.32,0.35]	chr22	768084	64	INTRON	INTRON	TNRC6B	ENSG00000100354.21	ENST00000301923.13:ENST00000441751.5:ENST00000402203.5	protein_coding	protein_coding	protein_coding	protein_coding	3	46	2	1.81328	2.305175	2.79707	0.0615716	0.0170923	0.193423	0.104099
chr7	111287692	111287792	3621359	0	-	0.33	(0.32,0.35]	chr7	337093	3238	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	46	2	1.81328	2.305175	2.79707	0.0615716	0.0170923	0.193423	0.104099
chr7	149003427	149003518	3670784	0	-	0.263736	[0,0.28]	chr7	340645	5	UTR3	UTR3:EXON_MRNA	PDIA4	ENSG00000155660.11	ENST00000652332.1:ENST00000286091.9	protein_coding	protein_coding	protein_coding	protein_coding	7	103	2	1.92095	2.305065	2.68918	0.0275571	0.00792024	0.123904	0.0797304
chr10	87869329	87869428	4482983	0	+	0.484848	(0.476,0.515]	chr10	412543	24	INTRON	INTRON	PTEN	ENSG00000171862.12	ENST00000688308.1:ENST00000693560.1:ENST00000371953.8:ENST00000688158.1:ENST00000686459.1:ENST00000462694.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	53	2	1.92984	2.305035	2.68023	0.0466474	0.00353671	0.151522	0.0546236
chr2	107709312	107709412	1205642	0	-	0.23	[0,0.28]	chr2	128526	56	INTRON	INTRON	LINC01885:ENSG00000286769	ENSG00000237880.2:ENSG00000286769.1	ENST00000654481.1:ENST00000669817.1	lncRNA	lncRNA	lncRNA	lncRNA	7	118	2	1.83959	2.30503	2.77047	0.0146743	0.00505301	0.106556	0.0621733
chr1	245908036	245908136	674704	0	-	0.57	(0.515,0.57]	chr1	79681	438	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000366517.5:ENST00000366516.5:ENST00000490107.6:ENST00000470510.5:ENST00000493441.5:ENST00000488153.5:ENST00000492487.5:ENST00000391836.3:ENST00000464398.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	65	2	2.11384	2.30492	2.496	0.0118599	0.00225531	0.0899583	0.0436331
chr17	30130432	30130532	6587526	0	+	0.32	(0.28,0.32]	chr17	640563	23	INTRON	INTRON	NSRP1	ENSG00000126653.18	ENST00000540900.7:ENST00000612959.4:ENST00000247026.10:ENST00000577289.6:ENST00000584154.5:ENST00000394826.8:ENST00000475652.5:ENST00000584317.5:ENST00000583301.5:ENST00000585881.5:ENST00000467446.6:ENST00000580103.6:ENST00000581048.5:ENST00000588614.1:ENST00000589608.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	67	2	2.18092	2.3048	2.42868	0.0271832	0.0105331	0.123904	0.0908969
chr3	17741297	17741394	1630421	0	-	0.319588	(0.28,0.32]	chr3	168279	5	INTRON	INTRON	TBC1D5	ENSG00000131374.15	ENST00000696125.1:ENST00000414318.2:ENST00000429383.8:ENST00000415814.6:ENST00000452492.6:ENST00000412981.5:ENST00000428355.5:ENST00000425944.5:ENST00000430169.5:ENST00000445294.5:ENST00000414349.5:ENST00000443499.6:ENST00000444756.5:ENST00000497531.5:ENST00000446863.5:ENST00000444471.5:ENST00000481396.5:ENST00000423331.6:ENST00000485432.1:ENST00000471679.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	67	2	2.18092	2.3048	2.42868	0.0271832	0.0105331	0.123904	0.0908969
chr19	15319238	15319338	7147273	0	-	0.5	(0.476,0.515]	chr19	721965	389	INTRON	INTRON	BRD4	ENSG00000141867.19	ENST00000679869.1:ENST00000360016.9:ENST00000594841.5:ENST00000597315.5:ENST00000601941.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	74	2	1.63962	2.30471	2.9698	0.0346854	0.00124841	0.148144	0.0323336
chr14	23065465	23065565	5842669	0	-	0.61	(0.57,1]	chr14	555592	1	SS5_PROX	SS5_PROX:INTRON	ACIN1	ENSG00000100813.15	ENST00000605057.6:ENST00000557515.5:ENST00000262710.5:ENST00000457657.5:ENST00000357481.6:ENST00000338631.10:ENST00000473758.5:ENST00000397341.7:ENST00000555053.5:ENST00000555566.1:ENST00000557039.1:ENST00000555807.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	69	2	2.04232	2.30465	2.56698	0.0027052	2.40979e-4	0.0467523	0.0136674
chr10	73061965	73062064	4647492	0	-	0.363636	(0.35,0.378]	chr10	427530	80	INTRON	INTRON	P4HA1	ENSG00000122884.13	ENST00000394890.7:ENST00000307116.6:ENST00000373008.6:ENST00000440381.5:ENST00000263556.3	protein_coding	protein_coding	protein_coding	protein_coding	12	123	2	1.43665	2.304645	3.17264	0.0191129	6.16722e-4	0.119379	0.0229036
chr6	88755886	88755986	3157050	0	-	0.44	(0.408,0.44]	chr6	294184	416	INTRON	INTRON	RNGTT	ENSG00000111880.16	ENST00000369485.9:ENST00000369475.7:ENST00000627296.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	49	2	1.78881	2.304615	2.82042	0.0370259	0.0120121	0.139194	0.0962115
chr9	91359192	91359290	4281200	0	-	0.357143	(0.35,0.378]	chr9	393817	27	INTRON	INTRON	AUH	ENSG00000148090.12	ENST00000303617.5:ENST00000375731.9:ENST00000478465.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	52	2	2.07049	2.304525	2.53856	0.0326077	0.0140397	0.133687	0.102801
chr7	128494143	128494243	3407251	0	+	0.49	(0.476,0.515]	chr7	318308	2	SS5_PROX	SS5_PROX:INTRON	METTL2B	ENSG00000165055.16	ENST00000482555.5:ENST00000262432.13:ENST00000497665.5:ENST00000480046.5:ENST00000481392.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	66	2	2.26034	2.304505	2.34867	0.0166235	0.00539703	0.110511	0.0644048
chr3	152314434	152314534	1535443	0	+	0.6	(0.57,1]	chr3	159996	121	INTRON	INTRON	MBNL1	ENSG00000152601.18	ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000495875.6:ENST00000324210.10:ENST00000493459.5:ENST00000459747.1:ENST00000460591.5:ENST00000545754.5:ENST00000357472.7:ENST00000324196.9:ENST00000498502.5:ENST00000463374.5:ENST00000485910.5:ENST00000465907.6:ENST00000492948.5:ENST00000485509.5:ENST00000464596.5	protein_coding	protein_coding	protein_coding	protein_coding	5	29	2	1.71424	2.304435	2.89463	0.0279017	0.00788262	0.137011	0.076155
chrX	154398642	154398739	7738267	0	+	0.505155	(0.476,0.515]	chrX	791959	1	SS5_PROX	SS5_PROX:INTRON	RPL10	ENSG00000147403.18	ENST00000492572.5:ENST00000436473.5:ENST00000344746.8:ENST00000369817.7:ENST00000491035.5:ENST00000489200.5:ENST00000458500.5:ENST00000485196.5:ENST00000482732.1:ENST00000467168.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	16	196	2	2.16813	2.30439	2.44065	8.63276e-4	2.77253e-4	0.0266494	0.0152764
chr11	66617550	66617650	4810804	0	+	0.59	(0.57,1]	chr11	447843	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	RBM14-RBM4:RBM14	ENSG00000248643.5:ENSG00000239306.5	ENST00000412278.2:ENST00000393979.3:ENST00000511114.1:ENST00000310137.5:ENST00000409372.1:ENST00000421355.1:ENST00000443702.1:ENST00000500635.2:ENST00000409738.4:ENST00000460762.1:ENST00000461478.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	11	67	2	1.79048	2.30434	2.8182	0.0064628	1.17872e-4	0.0699952	0.00930884
chr2	20348707	20348807	1076766	0	-	0.55	(0.515,0.57]	chr2	115047	153	INTRON	INTRON	PUM2	ENSG00000055917.16	ENST00000361078.7:ENST00000442400.5:ENST00000420234.5:ENST00000429419.6:ENST00000432105.5:ENST00000446940.5:ENST00000424110.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	14	145	2	2.04462	2.304335	2.56405	0.00235401	9.66595e-5	0.0436213	0.00826486
chr12	55787177	55787277	5332516	0	-	0.37	(0.35,0.378]	chr12	509126	262	INTRON	INTRON	SARNP	ENSG00000205323.9	ENST00000546604.5:ENST00000552884.5:ENST00000336133.8:ENST00000552080.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	82	2	1.2369	2.304325	3.37175	0.0511272	0.00236696	0.176696	0.043778
chr7	64349745	64349845	3319802	0	+	0.34	(0.32,0.35]	chr7	308641	7	UTR3	UTR3:EXON_MRNA	ZNF736	ENSG00000234444.10	ENST00000423484.3	protein_coding	protein_coding	protein_coding	protein_coding	4	55	2	1.97654	2.3043199999999997	2.6321	0.0268	0.0199113	0.123349	0.120668
chr7	64990191	64990273	3537532	0	-	0.341463	(0.32,0.35]	chr7	329943	4	UTR5	UTR5:EXON_MRNA:INTRON	ZNF117	ENSG00000152926.16	ENST00000282869.11:ENST00000487644.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	55	2	1.97654	2.3043199999999997	2.6321	0.0268	0.0199113	0.123349	0.120668
chr7	123734419	123734519	3632515	0	-	0.34	(0.32,0.35]	chr7	337581	248	INTRON	INTRON	WASL	ENSG00000106299.8	ENST00000223023.5	protein_coding	protein_coding	protein_coding	protein_coding	6	93	2	1.94202	2.30431	2.6666	0.0486128	5.34642e-4	0.153946	0.0209063
chr1	218310722	218310821	317423	0	+	0.424242	(0.408,0.44]	chr1	36399	27	INTRON	INTRON	RRP15	ENSG00000067533.6	ENST00000366932.4	protein_coding	protein_coding	protein_coding	protein_coding	3	40	2	1.94273	2.30426	2.66579	0.0456237	0.019342	0.149888	0.119831
chr5	176959954	176960054	2776460	0	-	0.43	(0.408,0.44]	chr5	261550	14	INTRON	INTRON	UIMC1	ENSG00000087206.17	ENST00000377227.8:ENST00000511320.6:ENST00000506128.5:ENST00000512031.5:ENST00000510698.2:ENST00000503273.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	40	2	1.94273	2.30426	2.66579	0.0456237	0.019342	0.149888	0.119831
chr9	91874561	91874661	4284508	0	-	0.43	(0.408,0.44]	chr9	393909	984	INTRON	INTRON	ROR2	ENSG00000169071.15	ENST00000375715.5:ENST00000375708.4:ENST00000550066.5:ENST00000495386.5:ENST00000546883.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	40	2	1.94273	2.30426	2.66579	0.0456237	0.019342	0.149888	0.119831
chrX	71575592	71575692	7680398	0	+	0.45	(0.44,0.476]	chrX	786485	19	UTR3	UTR3:EXON_MRNA	OGT	ENSG00000147162.14	ENST00000373719.8	protein_coding	protein_coding	protein_coding	protein_coding	27	327	2	1.9358900000000001	2.30422	2.67255	0.00156555	7.04576e-6	0.0360583	0.00188332
chr12	68633052	68633152	5161428	0	+	0.33	(0.32,0.35]	chr12	488585	78	INTRON	INTRON	RAP1B	ENSG00000127314.18	ENST00000460800.5:ENST00000393436.9:ENST00000250559.14:ENST00000425247.6:ENST00000501412.2:ENST00000450214.6:ENST00000463493.5:ENST00000537460.5:ENST00000341355.9:ENST00000538283.5:ENST00000541167.5:ENST00000422358.6:ENST00000489473.6:ENST00000545270.5:ENST00000538980.5:ENST00000543393.5:ENST00000542018.5:ENST00000540209.5:ENST00000378985.7:ENST00000453560.6:ENST00000534899.5:ENST00000542145.5:ENST00000539091.5:ENST00000535492.5:ENST00000540781.5:ENST00000485252.6:ENST00000538877.5:ENST00000541386.5:ENST00000543697.5:ENST00000545720.6:ENST00000541216.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	74	2	2.3011	2.304205	2.30731	0.0176772	0.00617969	0.10525	0.0713552
chr16	18884167	18884267	6457676	0	-	0.33	(0.32,0.35]	chr16	622843	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	SMG1	ENSG00000157106.18	ENST00000446231.7:ENST00000565324.5:ENST00000561947.5:ENST00000565224.5:ENST00000532700.6	protein_coding	protein_coding	protein_coding	protein_coding	5	74	2	2.3011	2.304205	2.30731	0.0176772	0.00617969	0.10525	0.0713552
chr14	101792858	101792957	5818808	0	+	0.414141	(0.408,0.44]	chr14	551829	31	INTRON	INTRON	PPP2R5C	ENSG00000078304.20	ENST00000694906.1:ENST00000422945.6:ENST00000554442.5:ENST00000556068.5:ENST00000328724.9:ENST00000554504.1:ENST00000553890.1:ENST00000553554.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	96	2	1.85123	2.30415	2.75707	0.00562669	0.00317496	0.0678837	0.0503542
chr22	23201550	23201650	7483417	0	+	0.53	(0.515,0.57]	chr22	763541	18	INTRON	INTRON	BCR	ENSG00000186716.21	ENST00000479188.5:ENST00000359540.7:ENST00000305877.13:ENST00000463770.5:ENST00000487679.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	54	2	2.17039	2.3041099999999997	2.43783	0.00916404	0.00900252	0.0851009	0.0812949
chr12	122514532	122514611	5442120	0	-	0.405063	(0.378,0.408]	chr12	520559	3	SS5_PROX	SS5_PROX:INTRON	RSRC2	ENSG00000111011.18	ENST00000331738.12:ENST00000532695.5:ENST00000433877.6:ENST00000527173.6:ENST00000525335.6:ENST00000344591.8:ENST00000528263.1:ENST00000527399.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	29	265	2	1.65393	2.3041	2.95427	0.00190421	1.58121e-4	0.0403644	0.0114628
chr1	160300956	160301056	571874	0	-	0.46	(0.44,0.476]	chr1	69300	13	INTRON	INTRON	COPA	ENSG00000122218.17	ENST00000241704.8:ENST00000696204.1:ENST00000696203.1:ENST00000696202.1:ENST00000649963.1:ENST00000696208.1:ENST00000696207.1:ENST00000696206.1:ENST00000649676.1:ENST00000368069.7:ENST00000647693.1:ENST00000649787.1:ENST00000650154.1:ENST00000647799.1:ENST00000648805.1:ENST00000647683.1:ENST00000649231.1:ENST00000648501.1:ENST00000696209.1:ENST00000696210.1:ENST00000696211.1:ENST00000647899.1:ENST00000648632.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	70	2	1.86755	2.30409	2.74063	0.0176095	0.00715715	0.105143	0.0756118
chr12	122574961	122575042	5241086	0	+	0.506173	(0.476,0.515]	chr12	497713	2	INTRON	INTRON	KNTC1	ENSG00000184445.12	ENST00000450485.6:ENST00000333479.12	protein_coding	protein_coding	protein_coding	protein_coding	5	63	2	1.83961	2.30408	2.76855	0.0314489	0.00244302	0.13151	0.0456956
chr16	23841096	23841196	6323809	0	+	0.57	(0.515,0.57]	chr16	605693	33	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000498058.1:ENST00000645517.1:ENST00000498739.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	86	2	1.51235	2.304075	3.0958	0.0176977	5.63557e-4	0.11319	0.0219303
chr1	54391472	54391572	463612	0	-	0.6	(0.57,1]	chr1	55784	348	INTRON	INTRON	SSBP3	ENSG00000157216.16	ENST00000610401.5:ENST00000357475.9:ENST00000371319.8:ENST00000417664.7:ENST00000533946.6:ENST00000371320.8:ENST00000525990.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	35	2	1.52865	2.304015	3.07938	0.0730445	4.22401e-4	0.189414	0.0183838
chr8	105475938	105476038	3838821	0	+	0.34	(0.32,0.35]	chr8	354063	243	INTRON	INTRON	ZFPM2	ENSG00000169946.14	ENST00000407775.7:ENST00000520492.5:ENST00000520027.5:ENST00000524235.5:ENST00000511341.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	55	2	1.61669	2.30397	2.99125	0.0578816	0.00958447	0.188651	0.0820838
chr21	43871845	43871945	7413856	0	+	0.28	[0,0.28]	chr21	755688	41	INTRON	INTRON	AGPAT3	ENSG00000160216.21	ENST00000291572.13:ENST00000448287.5	protein_coding	protein_coding	protein_coding	protein_coding	6	107	2	1.78859	2.303945	2.8193	0.0307903	0.00285248	0.13151	0.0494641
chrX	53541558	53541654	7820356	0	-	0.46875	(0.44,0.476]	chrX	797848	14	INTRON	INTRON	HUWE1	ENSG00000086758.16	ENST00000262854.11:ENST00000342160.7:ENST00000612484.4:ENST00000426907.5:ENST00000463852.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	64	2	1.66462	2.303915	2.94321	0.0520247	0.00111162	0.159508	0.0305384
chr22	20551827	20551907	7479803	0	+	0.425	(0.408,0.44]	chr22	762984	2	SS5_PROX	SS5_PROX:INTRON	MED15	ENSG00000099917.17	ENST00000445987.5:ENST00000444094.5:ENST00000414658.5:ENST00000433831.5:ENST00000432052.5:ENST00000292733.11:ENST00000263205.11:ENST00000477824.5:ENST00000406969.5:ENST00000382974.6:ENST00000441501.5:ENST00000445189.5:ENST00000451058.5:ENST00000473028.5:ENST00000457322.5:ENST00000428629.5:ENST00000424287.5:ENST00000423862.5:ENST00000420849.5:ENST00000487550.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	11	122	2	1.76662	2.3038600000000002	2.8411	0.00636414	6.58235e-4	0.0724478	0.0234118
chr1	158655048	158655148	570315	0	-	0.38	(0.378,0.408]	chr1	68877	3	SS3_PROX	SS3_PROX:INTRON	SPTA1	ENSG00000163554.15	ENST00000643759.2	protein_coding	protein_coding	protein_coding	protein_coding	3	41	2	2.29798	2.303795	2.30961	0.055088	0.0147606	0.165463	0.106702
chr20	38035684	38035783	7268894	0	+	0.353535	(0.35,0.378]	chr20	738673	12	INTRON	INTRON	RPRD1B	ENSG00000101413.12	ENST00000462548.6:ENST00000373433.9:ENST00000495457.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	109	2	2.1052	2.303785	2.50237	0.00818462	0.00111137	0.0768456	0.0305384
chr1	13787012	13787109	32035	0	+	0.371134	(0.35,0.378]	chr1	3887	6	UTR3	UTR3:EXON_MRNA:INTRON	PRDM2	ENSG00000116731.23	ENST00000311066.10:ENST00000376048.9:ENST00000235372.11:ENST00000491134.5:ENST00000413440.5:ENST00000343137.8:ENST00000503842.5:ENST00000505823.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	71	2	1.87586	2.30375	2.73164	0.0268864	0.00387645	0.135275	0.0543578
chr9	133160966	133161047	4369563	0	-	0.481481	(0.476,0.515]	chr9	402003	1	SS5_PROX	SS5_PROX:INTRON	GBGT1	ENSG00000148288.13	ENST00000372040.9:ENST00000372043.7:ENST00000470431.5:ENST00000472281.5:ENST00000540636.6:ENST00000646215.1:ENST00000372038.7:ENST00000644196.1:ENST00000372036.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	77	2	2.16306	2.303735	2.44441	0.00973468	0.0036718	0.0877284	0.0535094
chr18	21787748	21787848	6880207	0	+	0.38	(0.378,0.408]	chr18	681898	77	INTRON	INTRON	MIB1	ENSG00000101752.13	ENST00000578646.5:ENST00000261537.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	42	2	2.05897	2.30373	2.54849	0.0339294	0.0273196	0.136494	0.134508
chr22	41680043	41680143	7592040	0	-	0.39	(0.378,0.408]	chr22	777546	4	SS5_PROX	SS5_PROX:INTRON	SNU13	ENSG00000100138.15	ENST00000401959.6:ENST00000648674.1:ENST00000215956.10:ENST00000463675.6:ENST00000648350.1:ENST00000649479.1:ENST00000402458.1:ENST00000469028.2:ENST00000649722.1:ENST00000488571.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	42	2	2.05897	2.30373	2.54849	0.0339294	0.0273196	0.136494	0.134508
chr12	69599185	69599273	5165530	0	+	0.409091	(0.408,0.44]	chr12	489278	4	INTRON	INTRON	CCT2	ENSG00000166226.13	ENST00000299300.11:ENST00000544368.6:ENST00000550010.5:ENST00000543146.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	54	2	1.55035	2.3037	3.05705	0.0455214	0.00658331	0.164236	0.0701901
chr3	5124579	5124678	1353596	0	+	0.414141	(0.408,0.44]	chr3	142354	16	INTRON	INTRON	ARL8B	ENSG00000134108.14	ENST00000429403.5:ENST00000256496.8:ENST00000455168.5:ENST00000444332.1:ENST00000419534.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	132	2	2.294	2.30369	2.31338	0.00322111	6.02981e-4	0.0507087	0.0223465
chr10	21548329	21548429	4404550	0	+	0.35	(0.32,0.35]	chr10	406427	66	INTRON	INTRON	MLLT10	ENSG00000078403.17	ENST00000651097.1:ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000377100.8:ENST00000377091.7:ENST00000650772.1:ENST00000651298.1:ENST00000652497.1:ENST00000495130.5:ENST00000377059.7:ENST00000621220.4:ENST00000476557.5:ENST00000462999.5:ENST00000430455.2:ENST00000479634.1:ENST00000480415.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	88	2	1.29183	2.30358	3.31533	0.0438084	0.00323121	0.162255	0.0507087
chr12	105232690	105232790	5403840	0	-	0.47	(0.44,0.476]	chr12	515642	2	SS5_PROX	SS5_PROX:INTRON	APPL2	ENSG00000136044.12	ENST00000547439.5:ENST00000258530.8:ENST00000539978.6:ENST00000551662.5:ENST00000547809.5:ENST00000553097.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	64	2	2.10892	2.303575	2.49823	0.0132897	0.00718224	0.0944742	0.0756118
chr2	48347350	48347450	777648	0	+	0.47	(0.44,0.476]	chr2	87477	2	INTRON	INTRON	FOXN2	ENSG00000170802.17	ENST00000413569.5:ENST00000340553.8	protein_coding	protein_coding	protein_coding	protein_coding	3	39	2	2.14573	2.30354	2.46135	0.0374637	0.0238593	0.140008	0.129075
chr11	9577436	9577523	4730833	0	+	0.413793	(0.408,0.44]	chr11	438101	3	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	WEE1	ENSG00000166483.12	ENST00000680141.1:ENST00000450114.7:ENST00000299613.10:ENST00000524549.1:ENST00000681684.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	41	2	2.11447	2.3035249999999996	2.49258	0.0314608	0.0285207	0.144381	0.12666
chr5	104319171	104319271	2443607	0	+	0.42	(0.408,0.44]	chr5	234410	2139	INTRON	INTRON	LINC02163	ENSG00000251026.2	ENST00000662211.1:ENST00000666145.1	lncRNA	lncRNA	lncRNA	lncRNA	3	41	2	2.11447	2.3035249999999996	2.49258	0.0314608	0.0285207	0.144381	0.12666
chr1	1848278	1848378	362413	0	-	0.49	(0.476,0.515]	chr1	42311	82	INTRON	INTRON	GNB1	ENSG00000078369.18	ENST00000610897.4:ENST00000615252.4:ENST00000378609.9:ENST00000439272.6:ENST00000434686.6:ENST00000472614.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	80	2	1.73294	2.3035	2.87406	0.0174121	0.00188729	0.112632	0.0391691
chr18	2582211	2582311	6864500	0	+	0.49	(0.476,0.515]	chr18	679862	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:INTRON	NDC80	ENSG00000080986.13	ENST00000261597.9:ENST00000576274.2	protein_coding	protein_coding	protein_coding	protein_coding	7	80	2	1.73294	2.3035	2.87406	0.0174121	0.00188729	0.112632	0.0391691
chr4	126565308	126565408	2236362	0	-	0.28	[0,0.28]	chr4	219023	998	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	5	94	2	1.59412	2.30349	3.01286	0.0729426	0.00129799	0.189278	0.0333764
chr16	87732441	87732540	6538334	0	-	0.191919	[0,0.28]	chr16	633530	14	INTRON	INTRON	KLHDC4	ENSG00000104731.14	ENST00000567298.5:ENST00000270583.10:ENST00000347925.9:ENST00000353170.9:ENST00000316853.10:ENST00000566349.5:ENST00000562155.5:ENST00000622456.4:ENST00000562261.1:ENST00000566661.5:ENST00000567513.1:ENST00000564484.5:ENST00000565328.5:ENST00000569747.5:ENST00000564396.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	70	2	1.69895	2.3034600000000003	2.90797	0.0568939	0.0118539	0.167723	0.0962115
chr1	16290615	16290715	381997	0	-	0.49	(0.476,0.515]	chr1	44869	335	INTRON	INTRON	FBXO42	ENSG00000037637.11	ENST00000375592.8	protein_coding	protein_coding	protein_coding	protein_coding	8	96	2	2.1318	2.3033799999999998	2.47496	0.00333541	0.00323541	0.0528877	0.0507251
chr15	84982548	84982648	6088937	0	+	0.61	(0.57,1]	chr15	579503	2	SS5_PROX	SS5_PROX:INTRON	PDE8A	ENSG00000073417.15	ENST00000310298.8:ENST00000557957.5:ENST00000394553.6:ENST00000339708.9:ENST00000478717.5:ENST00000485596.5:ENST00000559742.5:ENST00000559086.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	38	2	1.72406	2.303335	2.88261	0.0261443	0.00118949	0.122221	0.031662
chr7	157216167	157216266	3454728	0	+	0.40404	(0.378,0.408]	chr7	322975	79	INTRON	INTRON	UBE3C	ENSG00000009335.18	ENST00000348165.10:ENST00000469336.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	56	2	1.76	2.303315	2.84663	0.023484	0.0133954	0.128531	0.0946278
chr12	64650415	64650515	5155397	0	+	0.46	(0.44,0.476]	chr12	488093	389	INTRON	INTRON	RASSF3	ENSG00000153179.13	ENST00000637125.1:ENST00000542104.6:ENST00000283172.8:ENST00000336061.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	39	2	1.93084	2.30328	2.67572	0.0443175	0.0212064	0.162302	0.113017
chr16	16142466	16142565	6309724	0	+	0.474747	(0.44,0.476]	chr16	603710	13	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ABCC1	ENSG00000103222.20	ENST00000678422.1:ENST00000677164.1:ENST00000399408.7:ENST00000572882.3:ENST00000399410.8:ENST00000676806.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	39	2	1.93084	2.30328	2.67572	0.0443175	0.0212064	0.162302	0.113017
chr16	81450931	81451031	6405058	0	+	0.48	(0.476,0.515]	chr16	615026	50	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8	protein_coding	protein_coding	protein_coding	protein_coding	4	54	2	2.06491	2.3032399999999997	2.54157	0.0304733	0.00697457	0.143385	0.0718189
chr6	147340879	147340978	2990093	0	+	0.292929	(0.28,0.32]	chr6	280116	11	INTRON	INTRON	STXBP5	ENSG00000164506.15	ENST00000321680.11:ENST00000367481.7:ENST00000367480.7:ENST00000367475.6:ENST00000392291.2	protein_coding	protein_coding	protein_coding	protein_coding	9	121	2	1.56907	2.30319	3.03731	0.0208069	0.0014867	0.122348	0.035
chr15	55261615	55261715	6180621	0	-	0.52	(0.515,0.57]	chr15	589160	12	INTRON	INTRON	RAB27A	ENSG00000069974.16	ENST00000336787.6:ENST00000396307.6:ENST00000564609.5:ENST00000569493.5:ENST00000567380.5:ENST00000565972.5:ENST00000563262.5:ENST00000568803.1:ENST00000567639.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	45	2	2.15051	2.3031800000000002	2.45585	0.0238113	0.00797827	0.118889	0.0798772
chr19	28470980	28471080	7165804	0	-	0.53	(0.515,0.57]	chr19	724189	27	INTRON	INTRON	ENSG00000283403:ENSG00000267243	ENSG00000283403.1:ENSG00000267243.6	ENST00000592347.5:ENST00000593065.5	lncRNA	lncRNA	lncRNA	lncRNA	4	45	2	2.15051	2.3031800000000002	2.45585	0.0238113	0.00797827	0.118889	0.0798772
chr17	4363064	4363163	6712330	0	-	0.393939	(0.378,0.408]	chr17	657734	174	INTRON	INTRON	UBE2G1	ENSG00000132388.13	ENST00000396981.7:ENST00000572484.5:ENST00000574633.5:ENST00000571980.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	41	2	1.81685	2.3031550000000003	2.78946	0.0597868	0.0158859	0.189982	0.101453
chr12	91592633	91592733	5385143	0	-	0.3	(0.28,0.32]	chr12	513485	854	INTRON	INTRON	ENSG00000289605	ENSG00000289605.1	ENST00000685093.1	lncRNA	lncRNA	lncRNA	lncRNA	3	50	2	1.86684	2.303145	2.73945	0.0605813	0.017681	0.171122	0.11319
chr2	28937453	28937547	725623	0	+	0.297872	(0.28,0.32]	chr2	83867	1	SS3_PROX	SS3_PROX:INTRON	WDR43	ENSG00000163811.12	ENST00000407426.8:ENST00000446643.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	50	2	1.86684	2.303145	2.73945	0.0605813	0.017681	0.171122	0.11319
chr16	4472722	4472818	6437604	0	-	0.375	(0.35,0.378]	chr16	619909	9	INTRON	INTRON	NMRAL1	ENSG00000153406.14	ENST00000574733.5:ENST00000283429.11:ENST00000404295.7:ENST00000574425.5:ENST00000571291.5:ENST00000573520.5:ENST00000573571.1:ENST00000575002.5:ENST00000575557.5:ENST00000576935.5:ENST00000575995.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	69	2	2.15877	2.303135	2.4475	0.0106974	0.0102036	0.089002	0.0862205
chr6	15489140	15489240	2825383	0	+	0.36	(0.35,0.378]	chr6	265224	12	INTRON	INTRON	JARID2	ENSG00000008083.14	ENST00000341776.7:ENST00000397311.4	protein_coding	protein_coding	protein_coding	protein_coding	4	54	2	2.28182	2.303125	2.32443	0.0544216	0.00637232	0.164972	0.0724821
chr1	65345823	65345923	136454	0	+	0.47	(0.44,0.476]	chr1	15357	1	SS5_PROX	SS5_PROX:INTRON	DNAJC6	ENSG00000116675.16	ENST00000463018.5:ENST00000494710.6:ENST00000263441.11:ENST00000395325.7:ENST00000483402.1:ENST00000371069.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	48	2	1.71574	2.303105	2.89047	0.045256	0.00955699	0.149888	0.0863913
chr22	19467072	19467172	7554773	0	-	0.42	(0.408,0.44]	chr22	772375	19	EXON_MRNA	EXON_MRNA:INTRON	UFD1	ENSG00000070010.19	ENST00000263202.15:ENST00000399523.5:ENST00000459854.5:ENST00000466373.1:ENST00000447868.5:ENST00000421968.6:ENST00000484101.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	77	2	2.29777	2.3030749999999998	2.30838	0.0067764	0.00547703	0.0711802	0.0671198
chr7	127735997	127736097	3403250	0	+	0.42	(0.408,0.44]	chr7	318134	142	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000468166.5:ENST00000465900.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	65	2	2.15938	2.3030600000000003	2.44674	0.011260300000000001	0.00868283	0.0884004	0.0842798
chr6	36599724	36599820	2854473	0	+	0.3125	(0.28,0.32]	chr6	269790	4	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	SRSF3	ENSG00000112081.17	ENST00000613941.4:ENST00000373715.11:ENST00000339436.11:ENST00000477442.6:ENST00000620941.1:ENST00000620389.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	155	2	2.01556	2.303045	2.5905300000000002	0.00506021	0.0020216	0.0621733	0.0416117
chr1	160300260	160300360	571867	0	-	0.52	(0.515,0.57]	chr1	69300	6	INTRON	INTRON	COPA	ENSG00000122218.17	ENST00000241704.8:ENST00000696204.1:ENST00000696203.1:ENST00000696202.1:ENST00000649963.1:ENST00000696208.1:ENST00000696207.1:ENST00000696206.1:ENST00000649676.1:ENST00000368069.7:ENST00000647693.1:ENST00000649787.1:ENST00000650154.1:ENST00000647799.1:ENST00000648805.1:ENST00000647683.1:ENST00000649231.1:ENST00000648501.1:ENST00000696209.1:ENST00000696210.1:ENST00000696211.1:ENST00000647899.1:ENST00000648632.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	83	2	2.28079	2.303	2.3252100000000002	0.00525266	0.00145207	0.0633615	0.0349828
chr3	138723491	138723591	1830378	0	-	0.45	(0.44,0.476]	chr3	184011	84	INTRON	INTRON	PIK3CB	ENSG00000051382.9	ENST00000674063.1:ENST00000289153.6:ENST00000477593.5:ENST00000462898.5:ENST00000462294.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	88	2	2.17952	2.302975	2.42643	0.00551887	0.0033369	0.0648867	0.0528877
chr2	111334513	111334613	1210190	0	-	0.34	(0.32,0.35]	chr2	128869	26	INTRON	INTRON	MIR4435-2HG	ENSG00000172965.17	ENST00000645030.2:ENST00000642191.1:ENST00000673798.1:ENST00000645051.2:ENST00000673649.1:ENST00000673962.1:ENST00000674132.1:ENST00000669658.1:ENST00000669917.1:ENST00000661559.1:ENST00000653687.1:ENST00000667670.1:ENST00000609220.2:ENST00000656760.1:ENST00000609902.6:ENST00000666683.1:ENST00000674070.1:ENST00000662335.1:ENST00000664422.1:ENST00000673775.1:ENST00000662889.1:ENST00000665096.1:ENST00000674092.1:ENST00000673958.1:ENST00000673770.1:ENST00000673961.1:ENST00000658936.1:ENST00000662635.1:ENST00000666204.1:ENST00000659458.1:ENST00000664443.1:ENST00000670295.1:ENST00000661655.1:ENST00000666390.1:ENST00000659079.1:ENST00000660442.1:ENST00000664009.1:ENST00000439362.6:ENST00000654473.1:ENST00000664999.1:ENST00000673728.1:ENST00000659791.1:ENST00000666144.1:ENST00000659933.1:ENST00000670715.1:ENST00000656303.1:ENST00000666367.1:ENST00000666652.1:ENST00000669050.1:ENST00000667218.1:ENST00000656067.1:ENST00000653568.1:ENST00000643013.1:ENST00000673866.1:ENST00000673700.1:ENST00000443467.6:ENST00000451884.6:ENST00000669875.1:ENST00000673653.1:ENST00000673988.1:ENST00000661945.1:ENST00000669515.1:ENST00000431385.6:ENST00000655573.1:ENST00000656416.1:ENST00000662384.1:ENST00000674037.1:ENST00000432818.5:ENST00000674013.1:ENST00000673843.1:ENST00000661707.1:ENST00000444301.5:ENST00000673964.1:ENST00000673959.1:ENST00000673845.1:ENST00000673756.1	lncRNA	lncRNA	lncRNA	lncRNA	6	86	2	1.76503	2.302895	2.84076	0.0240772	0.0027933	0.129859	0.0469265
chr11	46838531	46838631	4948689	0	-	0.45	(0.44,0.476]	chr11	463857	118	INTRON	INTRON	CKAP5	ENSG00000175216.15	ENST00000529230.6:ENST00000312055.9:ENST00000525248.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	111	2	1.84794	2.302855	2.75777	0.0127847	2.63233e-4	0.0926667	0.0143626
chr10	80519470	80519570	4476896	0	+	0.35	(0.32,0.35]	chr10	412121	16	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TSPAN14	ENSG00000108219.15	ENST00000429989.7:ENST00000372158.6:ENST00000372164.7:ENST00000616406.1:ENST00000265450.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	177	2	1.61535	2.30281	2.99027	0.0112729	1.82813e-4	0.0944799	0.0122682
chr1	229556055	229556154	653747	0	-	0.454545	(0.44,0.476]	chr1	77488	63	INTRON	INTRON	ABCB10	ENSG00000135776.5	ENST00000344517.5	protein_coding	protein_coding	protein_coding	protein_coding	2	29	2	2.20949	2.302765	2.39604	0.0672585	0.0404291	0.183051	0.161534
chr16	14263319	14263417	6303038	0	+	0.469388	(0.44,0.476]	chr16	602760	20	UTR3	UTR3:EXON_MRNA	MRTFB	ENSG00000186260.17	ENST00000571589.6:ENST00000318282.9:ENST00000572588.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	29	2	2.20949	2.302765	2.39604	0.0672585	0.0404291	0.183051	0.161534
chr18	3455977	3456071	6867162	0	+	0.446809	(0.44,0.476]	chr18	680337	7	UTR5	UTR5:EXON_MRNA:SS3_PROX:INTRON	TGIF1	ENSG00000177426.22	ENST00000552383.5:ENST00000401449.5:ENST00000550958.5:ENST00000548489.6:ENST00000618001.4:ENST00000549780.5:ENST00000549253.5:ENST00000405385.7:ENST00000407501.6:ENST00000546979.5:ENST00000343820.10:ENST00000551402.1:ENST00000577543.5:ENST00000551541.5:ENST00000345133.9:ENST00000330513.10:ENST00000549546.5:ENST00000400167.6:ENST00000549468.5:ENST00000551333.1:ENST00000472042.1	protein_coding	protein_coding	protein_coding	protein_coding	2	29	2	2.20949	2.302765	2.39604	0.0672585	0.0404291	0.183051	0.161534
chr19	14436233	14436332	7024406	0	+	0.444444	(0.44,0.476]	chr19	698850	12	INTRON	INTRON	PKN1	ENSG00000123143.13	ENST00000585619.5:ENST00000242783.11:ENST00000585839.5:ENST00000586557.5:ENST00000587429.1:ENST00000590097.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	29	2	2.20949	2.302765	2.39604	0.0672585	0.0404291	0.183051	0.161534
chr3	143988219	143988318	1529921	0	+	0.474747	(0.44,0.476]	chr3	159518	20	INTRON	INTRON	DIPK2A	ENSG00000181744.9	ENST00000315691.8:ENST00000493396.1:ENST00000495414.5:ENST00000492452.2:ENST00000441925.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	29	2	2.20949	2.302765	2.39604	0.0672585	0.0404291	0.183051	0.161534
chr3	195366954	195367054	1895150	0	-	0.46	(0.44,0.476]	chr3	189674	88	INTRON	INTRON	ACAP2	ENSG00000114331.16	ENST00000326793.11:ENST00000635383.1:ENST00000480906.5:ENST00000481463.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	29	2	2.20949	2.302765	2.39604	0.0672585	0.0404291	0.183051	0.161534
chr8	102363424	102363524	4012263	0	-	0.45	(0.44,0.476]	chr8	367237	14	INTRON	INTRON	UBR5	ENSG00000104517.13	ENST00000520539.6:ENST00000220959.8:ENST00000521922.5	protein_coding	protein_coding	protein_coding	protein_coding	2	29	2	2.20949	2.302765	2.39604	0.0672585	0.0404291	0.183051	0.161534
chr8	129351384	129351483	4058774	0	-	0.494949	(0.476,0.515]	chr8	369545	63	INTRON	INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000657400.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1	lncRNA	lncRNA	lncRNA	lncRNA	12	128	2	1.56302	2.302735	3.04245	0.0127429	2.24944e-4	0.0987441	0.013767
chr15	41296403	41296503	6004512	0	+	0.41	(0.408,0.44]	chr15	571267	2	SS3_PROX	SS3_PROX:INTRON	OIP5-AS1	ENSG00000247556.6	ENST00000558945.5:ENST00000500949.6:ENST00000561275.5:ENST00000560706.5:ENST00000501665.2	lncRNA	lncRNA	lncRNA	lncRNA	6	80	2	1.94273	2.30272	2.66271	0.0456237	4.42751e-4	0.149888	0.0190383
chr5	134165873	134165973	2726243	0	-	0.47	(0.44,0.476]	chr5	256488	41	INTRON	INTRON	SKP1	ENSG00000113558.19	ENST00000353411.11:ENST00000522552.5:ENST00000521216.5:ENST00000517625.5:ENST00000523966.5:ENST00000522855.5:ENST00000328392.10:ENST00000519054.5:ENST00000519321.5:ENST00000520417.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	100	2	2.29258	2.30261	2.31264	0.00316873	0.00279559	0.0503085	0.0488779
chr8	123347406	123347506	4042128	0	-	0.35	(0.32,0.35]	chr8	368706	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	ATAD2	ENSG00000156802.13	ENST00000287394.10:ENST00000517666.5:ENST00000521903.5:ENST00000519124.5:ENST00000521496.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	158	2	2.02072	2.3026099999999996	2.5845	0.0056508	4.12988e-4	0.0653997	0.0181365
chr6	36886128	36886228	2854805	0	+	0.58	(0.57,1]	chr6	269859	1	SS5_PROX	SS5_PROX:INTRON	C6orf89	ENSG00000198663.17	ENST00000359359.6:ENST00000355190.7:ENST00000373685.1:ENST00000480824.7	protein_coding	protein_coding	protein_coding	protein_coding	8	47	2	2.01786	2.302595	2.58733	0.00454222	0.00313784	0.0595107	0.0514466
chr7	155309741	155309839	3451886	0	+	0.255102	[0,0.28]	chr7	322637	15	UTR3	UTR3:EXON_MRNA	INSIG1	ENSG00000186480.13	ENST00000344756.8:ENST00000340368.9	protein_coding	protein_coding	protein_coding	protein_coding	13	247	2	2.1412	2.302555	2.46391	0.00319206	0.00105874	0.0520345	0.0297779
chr16	22475816	22475915	6322340	0	+	0.474747	(0.44,0.476]	chr16	605367	2	INTRON	INTRON	SMG1P1	ENSG00000237296.10	ENST00000381231.5:ENST00000309865.11:ENST00000431681.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	5	55	2	1.5191	2.302505	3.08591	0.0526241	0.00481262	0.160983	0.0638089
chr19	10964706	10964806	7015593	0	+	0.5	(0.476,0.515]	chr19	697162	26	INTRON	INTRON	SMARCA4	ENSG00000127616.20	ENST00000644737.1:ENST00000642726.1:ENST00000646484.1:ENST00000643549.1:ENST00000643296.1:ENST00000647230.1:ENST00000642628.1:ENST00000646510.1:ENST00000429416.8:ENST00000644760.1:ENST00000344626.10:ENST00000646693.2:ENST00000645460.1:ENST00000541122.6:ENST00000589677.5:ENST00000444061.8:ENST00000590574.6	protein_coding	protein_coding	protein_coding	protein_coding	2	29	2	2.28264	2.3024699999999996	2.3223	0.0534132	0.0519312	0.179876	0.159306
chr22	35200016	35200116	7580759	0	-	0.48	(0.476,0.515]	chr22	775774	46	INTRON	INTRON	LINC01399	ENSG00000233080.3	ENST00000423311.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	2	29	2	2.28264	2.3024699999999996	2.3223	0.0534132	0.0519312	0.179876	0.159306
chr3	11458234	11458334	1366276	0	+	0.48	(0.476,0.515]	chr3	143949	114	INTRON	INTRON	ATG7	ENSG00000197548.13	ENST00000693202.1:ENST00000435760.6:ENST00000685771.1:ENST00000354449.7:ENST00000354956.9:ENST00000446450.6:ENST00000427759.5:ENST00000446110.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	29	2	2.28264	2.3024699999999996	2.3223	0.0534132	0.0519312	0.179876	0.159306
chr3	43466124	43466224	1673875	0	-	0.48	(0.476,0.515]	chr3	170972	330	INTRON	INTRON	ANO10	ENSG00000160746.13	ENST00000292246.8:ENST00000350459.8:ENST00000396091.7:ENST00000414522.6:ENST00000451430.6:ENST00000448045.1	protein_coding	protein_coding	protein_coding	protein_coding	2	29	2	2.28264	2.3024699999999996	2.3223	0.0534132	0.0519312	0.179876	0.159306
chr4	150661396	150661496	2268185	0	-	0.5	(0.476,0.515]	chr4	220713	619	INTRON	INTRON	LRBA	ENSG00000198589.14	ENST00000357115.9:ENST00000651943.2:ENST00000510413.5:ENST00000509835.5:ENST00000651695.1:ENST00000651035.1:ENST00000507224.5:ENST00000513021.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	29	2	2.28264	2.3024699999999996	2.3223	0.0534132	0.0519312	0.179876	0.159306
chr7	64352640	64352740	3319831	0	+	0.48	(0.476,0.515]	chr7	308641	36	UTR3	UTR3:EXON_MRNA	ZNF736	ENSG00000234444.10	ENST00000423484.3	protein_coding	protein_coding	protein_coding	protein_coding	2	29	2	2.28264	2.3024699999999996	2.3223	0.0534132	0.0519312	0.179876	0.159306
chr8	94838162	94838262	3800270	0	+	0.51	(0.476,0.515]	chr8	352364	3	SS3_PROX	SS3_PROX:INTRON	INTS8	ENSG00000164941.14	ENST00000523731.6:ENST00000524333.5:ENST00000523321.5:ENST00000343161.8:ENST00000523206.5:ENST00000520526.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	29	2	2.28264	2.3024699999999996	2.3223	0.0534132	0.0519312	0.179876	0.159306
chrX	18300693	18300793	7770511	0	-	0.5	(0.476,0.515]	chrX	794176	120	INTRON	INTRON	SCML2	ENSG00000102098.19	ENST00000251900.9	protein_coding	protein_coding	protein_coding	protein_coding	2	29	2	2.28264	2.3024699999999996	2.3223	0.0534132	0.0519312	0.179876	0.159306
chr6	57103679	57103778	2878194	0	+	0.414141	(0.408,0.44]	chr6	273248	17	UTR3	UTR3:EXON_MRNA:INTRON	ZNF451	ENSG00000112200.17	ENST00000515290.5:ENST00000510483.5:ENST00000357489.7:ENST00000370708.8:ENST00000370702.5:ENST00000444273.6:ENST00000370711.9:ENST00000370706.9:ENST00000491832.6:ENST00000502749.1:ENST00000504603.1:ENST00000509071.5:ENST00000509251.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	106	2	2.03695	2.302355	2.56776	0.00333392	0.00227507	0.0528877	0.0426265
chr8	37869327	37869426	3935637	0	-	0.535354	(0.515,0.57]	chr8	360553	59	INTRON	INTRON	RAB11FIP1	ENSG00000156675.16	ENST00000330843.9:ENST00000287263.8:ENST00000522727.5:ENST00000523182.5:ENST00000522774.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	65	2	2.06758	2.302315	2.53705	0.0140038	0.00186194	0.0959618	0.039946
chr1	212047517	212047617	307459	0	+	0.48	(0.476,0.515]	chr1	35477	1	SS5_PROX	SS5_PROX:INTRON	DTL	ENSG00000143476.18	ENST00000542077.5:ENST00000366991.5:ENST00000475419.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	39	2	1.72558	2.3021849999999997	2.87879	0.0767648	0.00999149	0.196164	0.0879541
chr10	11994783	11994883	4557296	0	-	0.51	(0.476,0.515]	chr10	420588	153	INTRON	INTRON	UPF2	ENSG00000151461.20	ENST00000357604.10:ENST00000356352.6:ENST00000397053.6	protein_coding	protein_coding	protein_coding	protein_coding	3	39	2	1.72558	2.3021849999999997	2.87879	0.0767648	0.00999149	0.196164	0.0879541
chr11	28119955	28120054	4752270	0	+	0.515152	(0.476,0.515]	chr11	440072	60	INTRON	INTRON	METTL15	ENSG00000169519.21	ENST00000406787.7:ENST00000403099.5:ENST00000451385.6:ENST00000407364.8:ENST00000532947.2:ENST00000634627.1:ENST00000634973.1:ENST00000303459.10:ENST00000634721.1:ENST00000634762.1:ENST00000437814.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	39	2	1.72558	2.3021849999999997	2.87879	0.0767648	0.00999149	0.196164	0.0879541
chr16	21900087	21900183	6462270	0	-	0.510417	(0.476,0.515]	chr16	623555	6	INTRON	INTRON	SMG1P4	ENSG00000185710.9	ENST00000523028.5	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	3	39	2	1.72558	2.3021849999999997	2.87879	0.0767648	0.00999149	0.196164	0.0879541
chr19	3385737	3385837	6999818	0	+	0.51	(0.476,0.515]	chr19	694173	31	INTRON	INTRON	NFIC	ENSG00000141905.19	ENST00000641145.1:ENST00000589123.5:ENST00000395111.7:ENST00000586919.5:ENST00000341919.7:ENST00000443272.3:ENST00000590282.5	protein_coding	protein_coding	protein_coding	protein_coding	3	39	2	1.72558	2.3021849999999997	2.87879	0.0767648	0.00999149	0.196164	0.0879541
chr2	202283446	202283541	985095	0	+	0.484211	(0.476,0.515]	chr2	105729	6	INTRON	INTRON	NOP58	ENSG00000055044.11	ENST00000488403.5:ENST00000426814.5:ENST00000264279.10:ENST00000472050.5:ENST00000467734.5:ENST00000492688.5:ENST00000478941.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	39	2	1.72558	2.3021849999999997	2.87879	0.0767648	0.00999149	0.196164	0.0879541
chr22	49480996	49481096	7600889	0	-	0.63	(0.57,1]	chr22	778566	394	INTRON	INTRON	MIR3667HG	ENSG00000188511.13	ENST00000414287.5:ENST00000416411.1	lncRNA	lncRNA	lncRNA	lncRNA	7	35	2	1.42137	2.3021849999999997	3.183	0.0395751	0.00254356	0.161534	0.0448135
chr5	299785	299885	2312902	0	+	0.49	(0.476,0.515]	chr5	223715	230	INTRON	INTRON	PDCD6	ENSG00000249915.9	ENST00000614778.4:ENST00000618970.4:ENST00000513582.5:ENST00000264933.9:ENST00000505221.5:ENST00000507528.5:ENST00000505526.1:ENST00000507473.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	39	2	1.72558	2.3021849999999997	2.87879	0.0767648	0.00999149	0.196164	0.0879541
chr3	172774422	172774522	1563465	0	+	0.52	(0.515,0.57]	chr3	161782	4	SS5_PROX	SS5_PROX:INTRON	ECT2	ENSG00000114346.14	ENST00000232458.9:ENST00000540509.5:ENST00000392692.8:ENST00000417960.5:ENST00000441497.6:ENST00000444250.1	protein_coding	protein_coding	protein_coding	protein_coding	8	76	2	1.97184	2.30217	2.6325	0.00439001	0.0041442	0.0589266	0.0585064
chr2	98557585	98557684	834031	0	+	0.434343	(0.408,0.44]	chr2	93501	14	INTRON	INTRON	INPP4A	ENSG00000040933.16	ENST00000409016.8:ENST00000409851.8:ENST00000074304.9:ENST00000409463.5:ENST00000409540.7:ENST00000523221.1	protein_coding	protein_coding	protein_coding	protein_coding	6	60	2	1.49789	2.30215	3.10641	0.0390091	0.00555646	0.161009	0.0648867
chr13	110890344	110890443	5650388	0	-	0.474747	(0.44,0.476]	chr13	538339	62	INTRON	INTRON	ANKRD10	ENSG00000088448.14	ENST00000267339.6:ENST00000485844.1:ENST00000603993.1:ENST00000489973.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	66	2	1.75627	2.302135	2.848	0.0380723	0.00215274	0.157702	0.0417866
chr6	31624901	31624990	2843136	0	+	0.483146	(0.476,0.515]	chr6	267594	1	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PRRC2A	ENSG00000204469.13	ENST00000376033.3:ENST00000376007.8:ENST00000469577.5:ENST00000464079.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	9	113	2	1.94611	2.302125	2.65814	0.0075261	6.21095e-4	0.0773151	0.0229151
chr17	57407638	57407738	6634269	0	+	0.56	(0.515,0.57]	chr17	648045	2	INTRON	INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000674961.1:ENST00000582453.5:ENST00000675656.1:ENST00000322684.7:ENST00000579590.5:ENST00000442934.6:ENST00000579180.2:ENST00000579205.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	34	2	1.9459	2.30212	2.65834	0.0429089	0.0187418	0.148082	0.117523
chr3	170106131	170106231	1861059	0	-	0.51	(0.476,0.515]	chr3	186596	28	INTRON	INTRON	PHC3	ENSG00000173889.16	ENST00000495893.7:ENST00000494943.5:ENST00000467570.5	protein_coding	protein_coding	protein_coding	protein_coding	3	39	2	1.79693	2.30211	2.80729	0.0649782	0.0126008	0.179417	0.0980703
chrX	53653067	53653166	7821571	0	-	0.50505	(0.476,0.515]	chrX	798227	44	INTRON	INTRON	HUWE1	ENSG00000086758.16	ENST00000262854.11:ENST00000342160.7:ENST00000612484.4:ENST00000218328.12:ENST00000446750.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	39	2	1.79693	2.30211	2.80729	0.0649782	0.0126008	0.179417	0.0980703
chr16	100271	100371	6425372	0	-	0.49	(0.476,0.515]	chr16	617336	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	NPRL3	ENSG00000103148.17	ENST00000611875.5:ENST00000622194.4:ENST00000621703.4:ENST00000399953.7:ENST00000473674.5:ENST00000457916.5:ENST00000483663.5:ENST00000422814.5:ENST00000468260.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	39	2	2.19809	2.302085	2.40608	0.0425709	0.020317	0.148082	0.121522
chr16	14976193	14976288	6305146	0	+	0.494737	(0.476,0.515]	chr16	603263	6	INTRON	INTRON	PDXDC1	ENSG00000179889.20	ENST00000563679.5:ENST00000563667.5:ENST00000563522.5:ENST00000535621.6:ENST00000396410.9:ENST00000566426.1:ENST00000455313.6:ENST00000562119.5:ENST00000570001.5:ENST00000569715.5:ENST00000627450.2:ENST00000565362.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	39	2	2.19809	2.302085	2.40608	0.0425709	0.020317	0.148082	0.121522
chr7	107128994	107129093	3378013	0	+	0.343434	(0.32,0.35]	chr7	316264	3	INTRON	INTRON	PRKAR2B	ENSG00000005249.13	ENST00000265717.5:ENST00000393613.6:ENST00000488792.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	76	2	1.40199	2.3020750000000003	3.20216	0.0432025	0.00480708	0.162255	0.0602209
chr3	19967147	19967247	1376236	0	+	0.5	(0.476,0.515]	chr3	145051	139	INTRON	INTRON	RAB5A	ENSG00000144566.11	ENST00000273047.9:ENST00000412966.5:ENST00000446547.5:ENST00000422242.1:ENST00000469122.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	155	2	2.2492	2.301945	2.35469	0.00238578	2.99003e-4	0.0439909	0.0155054
chr3	15813340	15813439	1623979	0	-	0.353535	(0.35,0.378]	chr3	168027	153	INTRON	INTRON	ANKRD28	ENSG00000206560.12	ENST00000399451.6:ENST00000412318.5:ENST00000439830.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	110	2	1.90784	2.30192	2.696	0.0165983	4.12892e-4	0.102621	0.0181365
chrX	66221528	66221628	7673279	0	+	0.59	(0.57,1]	chrX	785355	129	INTRON	INTRON	HEPH	ENSG00000089472.18	ENST00000519389.6:ENST00000683049.1:ENST00000458621.6:ENST00000684042.1:ENST00000343002.7:ENST00000336279.9:ENST00000441993.7:ENST00000419594.6:ENST00000682362.1:ENST00000425114.2:ENST00000682927.1:ENST00000683420.1:ENST00000684071.1:ENST00000684625.1:ENST00000684603.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	28	2	2.23972	2.301915	2.36411	0.0408868	0.00670296	0.161534	0.0707084
chr3	50017211	50017311	1423732	0	+	0.44	(0.408,0.44]	chr3	149994	173	INTRON	INTRON	RBM6	ENSG00000004534.15	ENST00000442092.5:ENST00000443081.5:ENST00000419610.5:ENST00000441115.5:ENST00000422955.5:ENST00000454079.5:ENST00000266022.9:ENST00000425608.5:ENST00000434592.5:ENST00000464013.5:ENST00000483350.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	73	2	1.62122	2.3019100000000003	2.9826	0.0394247	9.23082e-4	0.143072	0.0278392
chr1	171505472	171505571	253414	0	+	0.242424	[0,0.28]	chr1	30096	194	INTRON	INTRON	PRRC2C	ENSG00000117523.18	ENST00000647382.2:ENST00000367742.7:ENST00000476522.5:ENST00000338920.8:ENST00000467601.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	56	2	2.05756	2.3019	2.54624	0.0388449	0.0352544	0.150301	0.143072
chr5	179622770	179622848	2779775	0	-	0.589744	(0.57,1]	chr5	262334	4	SS5_PROX	SS5_PROX:INTRON	HNRNPH1	ENSG00000169045.17	ENST00000329433.11:ENST00000393432.9:ENST00000356731.9:ENST00000442819.6:ENST00000514332.5:ENST00000510411.5:ENST00000510678.5:ENST00000514731.5:ENST00000503105.5:ENST00000504779.6:ENST00000508103.5:ENST00000506721.5:ENST00000523137.5:ENST00000505811.5:ENST00000510431.5:ENST00000519056.5:ENST00000504348.5:ENST00000513225.5:ENST00000524180.5:ENST00000513972.5:ENST00000519707.5:ENST00000519455.5:ENST00000515158.5:ENST00000521116.5:ENST00000505087.1:ENST00000515714.5:ENST00000512273.5:ENST00000503664.1:ENST00000630639.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	33	192	2	2.11107	2.30183	2.49259	4.6294e-5	1.40158e-5	0.00554739	0.00298286
chr19	38658748	38658848	7065839	0	+	0.41	(0.408,0.44]	chr19	705486	101	INTRON	INTRON	ACTN4	ENSG00000130402.13	ENST00000252699.7:ENST00000588618.5:ENST00000440400.2:ENST00000424234.7:ENST00000589528.1:ENST00000390009.7:ENST00000495553.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	73	2	1.73753	2.301825	2.86612	0.0275537	0.00157924	0.123904	0.0366789
chr1	45831780	45831880	94095	0	+	0.47	(0.44,0.476]	chr1	12696	18	INTRON	INTRON	MAST2	ENSG00000086015.23	ENST00000470809.1:ENST00000361297.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	63	2	2.26452	2.301755	2.33899	0.0142027	0.00654074	0.0959987	0.0735539
chr18	36167818	36167915	6891830	0	+	0.546392	(0.515,0.57]	chr18	683075	2	INTRON	INTRON	ELP2	ENSG00000134759.14	ENST00000351393.10:ENST00000442325.6:ENST00000358232.11:ENST00000423854.6:ENST00000539560.5:ENST00000350494.10:ENST00000542824.5:ENST00000540766.5:ENST00000545302.5:ENST00000541748.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	12	123	2	2.29652	2.3017450000000004	2.30697	0.00157487	4.71195e-4	0.0361957	0.0196294
chr16	2266274	2266357	6431686	0	-	0.481928	(0.476,0.515]	chr16	618818	3	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	RNPS1	ENSG00000205937.12	ENST00000397086.6:ENST00000566458.5:ENST00000320225.10:ENST00000565678.5:ENST00000561718.5:ENST00000568631.5:ENST00000569598.6:ENST00000301730.12:ENST00000567147.5:ENST00000561518.5:ENST00000564311.5:ENST00000570051.5:ENST00000564601.5:ENST00000564764.5:ENST00000566180.5:ENST00000562690.5:ENST00000569709.5:ENST00000565333.5:ENST00000565589.5:ENST00000564822.1:ENST00000566783.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	39	2	1.8388	2.3017000000000003	2.7646	0.0564473	0.0162075	0.184423	0.101453
chr16	15883327	15883417	6451903	0	-	0.477778	(0.476,0.515]	chr16	621928	3	SS3_PROX	SS3_PROX:INTRON	CEP20	ENSG00000133393.13	ENST00000255759.11:ENST00000573968.5:ENST00000573087.5:ENST00000573396.5:ENST00000575744.5:ENST00000572415.5:ENST00000575073.5:ENST00000573429.5:ENST00000575938.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	39	2	1.8388	2.3017000000000003	2.7646	0.0564473	0.0162075	0.184423	0.101453
chr19	5940422	5940522	7125222	0	-	0.49	(0.476,0.515]	chr19	717348	42	INTRON	INTRON	RANBP3	ENSG00000031823.14	ENST00000340578.10:ENST00000439268.6:ENST00000592771.5:ENST00000591092.5:ENST00000034275.12:ENST00000587479.2:ENST00000592621.5:ENST00000590623.5:ENST00000591736.5:ENST00000590953.5:ENST00000588879.5:ENST00000587159.5:ENST00000586117.5:ENST00000589353.5:ENST00000587463.5:ENST00000588010.5:ENST00000591124.5:ENST00000585339.5:ENST00000592133.5:ENST00000591881.5:ENST00000589886.5:ENST00000587263.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	39	2	1.8388	2.3017000000000003	2.7646	0.0564473	0.0162075	0.184423	0.101453
chr3	43558838	43558937	1674805	0	-	0.494949	(0.476,0.515]	chr3	170990	30	INTRON	INTRON	ANO10	ENSG00000160746.13	ENST00000292246.8:ENST00000350459.8:ENST00000396091.7:ENST00000414522.6:ENST00000451430.6	protein_coding	protein_coding	protein_coding	protein_coding	3	39	2	1.8388	2.3017000000000003	2.7646	0.0564473	0.0162075	0.184423	0.101453
chr20	49285381	49285480	7284675	0	+	0.444444	(0.44,0.476]	chr20	741065	32	INTRON	INTRON	ZFAS1	ENSG00000177410.13	ENST00000371743.8:ENST00000417721.5:ENST00000441722.5:ENST00000450535.5:ENST00000458653.5:ENST00000428008.6:ENST00000620594.2:ENST00000652916.1:ENST00000326677.9:ENST00000659056.1	lncRNA	lncRNA	lncRNA	lncRNA	8	101	2	2.1923	2.3016199999999998	2.41094	0.0043698	0.00205841	0.0604104	0.0409869
chr20	53592755	53592855	7358474	0	-	0.47	(0.44,0.476]	chr20	750309	92	INTRON	INTRON	ZNF217	ENSG00000171940.14	ENST00000371471.7:ENST00000431687.5:ENST00000540425.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	72	2	1.96805	2.301565	2.63508	0.0109533	0.00501007	0.0925675	0.0618077
chr1	12340586	12340685	29375	0	+	0.40404	(0.378,0.408]	chr1	3596	19	INTRON	INTRON	VPS13D	ENSG00000048707.15	ENST00000620676.6:ENST00000613099.4:ENST00000011700.10:ENST00000646917.1:ENST00000460333.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	79	2	2.13797	2.30153	2.46509	0.0124882	0.00287152	0.0923444	0.0494641
chr6	26890994	26891093	3071614	0	-	0.323232	(0.32,0.35]	chr6	285551	14	INTRON	INTRON	GUSBP2	ENSG00000241549.8	ENST00000479900.5:ENST00000463434.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	5	74	2	2.10695	2.301525	2.4961	0.0127483	0.00967886	0.0987441	0.0828038
chr22	22320650	22320750	7483061	0	+	0.43	(0.408,0.44]	chr22	763475	10	INTRON	INTRON	ENSG00000286129	ENSG00000286129.1	ENST00000652112.1	lncRNA	lncRNA	lncRNA	lncRNA	4	53	2	2.00228	2.30138	2.60048	0.0389732	0.00484324	0.143072	0.0640618
chr19	582838	582931	6991960	0	+	0.376344	(0.35,0.378]	chr19	692180	1	UTR3	UTR3:EXON_MRNA	BSG	ENSG00000172270.22	ENST00000545507.6:ENST00000346916.9:ENST00000680065.1:ENST00000679472.1:ENST00000680552.1:ENST00000576925.4:ENST00000333511.9:ENST00000353555.9:ENST00000680326.1:ENST00000618006.4:ENST00000614867.2:ENST00000618112.4:ENST00000573784.6:ENST00000576984.3:ENST00000571735.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	147	2	1.95894	2.301295	2.64365	0.00660342	2.65151e-4	0.0703181	0.0144176
chr7	76331832	76331932	3562270	0	-	0.31	(0.28,0.32]	chr7	331942	12	INTRON	INTRON	YWHAG	ENSG00000170027.7	ENST00000307630.5	protein_coding	protein_coding	protein_coding	protein_coding	4	61	2	1.68409	2.301205	2.91832	0.0548665	0.0102484	0.165463	0.089002
chr17	77093540	77093636	6678148	0	+	0.59375	(0.57,1]	chr17	652310	3	EXON_LNCRNA	EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SNHG20:SEC14L1	ENSG00000234912.12:ENSG00000129657.16	ENST00000564414.5:ENST00000568056.5:ENST00000568363.5:ENST00000647734.1:ENST00000434411.6:ENST00000649047.1:ENST00000649712.1:ENST00000650557.1:ENST00000647904.1:ENST00000648984.1:ENST00000392476.6:ENST00000589827.5:ENST00000561721.6:ENST00000561633.5:ENST00000564509.5:ENST00000565256.1:ENST00000566583.5:ENST00000648740.1:ENST00000569632.1:ENST00000430767.8	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	5	29	2	1.37384	2.3011999999999997	3.22856	0.0766386	0.00205928	0.196164	0.0420839
chr9	137300215	137300313	4375997	0	-	0.602041	(0.57,1]	chr9	403378	7	UTR3	UTR3:EXON_MRNA	NRARP	ENSG00000198435.4	ENST00000356628.4	protein_coding	protein_coding	protein_coding	protein_coding	5	29	2	1.37384	2.3011999999999997	3.22856	0.0766386	0.00205928	0.196164	0.0420839
chr12	70320360	70320459	5167216	0	+	0.313131	(0.28,0.32]	chr12	489433	6	INTRON	INTRON	CNOT2	ENSG00000111596.14	ENST00000418359.7:ENST00000552319.5:ENST00000550160.5:ENST00000551132.5:ENST00000548021.5:ENST00000550641.6:ENST00000229195.8:ENST00000552915.5:ENST00000549443.5:ENST00000552483.5:ENST00000547321.5:ENST00000548159.5:ENST00000549750.5:ENST00000551043.5:ENST00000548599.5:ENST00000550194.5:ENST00000551873.5:ENST00000552151.2:ENST00000548863.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	68	2	1.51776	2.30119	3.08462	0.0528371	0.0078976	0.178899	0.076155
chr20	47253523	47253622	7348468	0	-	0.40404	(0.378,0.408]	chr20	749282	37	INTRON	INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000467200.6:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000468376.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	66	2	2.04622	2.301145	2.55607	0.0149927	0.00704647	0.107704	0.0718189
chr21	6990716	6990815	7425927	0	-	0.383838	(0.378,0.408]	chr21	757520	37	INTRON	INTRON	ENSG00000280018	ENSG00000280018.4	ENST00000623165.3	lncRNA	lncRNA	lncRNA	lncRNA	5	66	2	2.04622	2.301145	2.55607	0.0149927	0.00704647	0.107704	0.0718189
chr6	4817100	4817200	2791269	0	+	0.38	(0.378,0.408]	chr6	263598	399	INTRON	INTRON	CDYL	ENSG00000153046.18	ENST00000328908.9:ENST00000491864.1:ENST00000440139.5:ENST00000483019.1:ENST00000397588.8:ENST00000472453.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	66	2	2.04622	2.301145	2.55607	0.0149927	0.00704647	0.107704	0.0718189
chr16	89594458	89594558	6421126	0	+	0.65	(0.57,1]	chr16	616410	3	SS5_PROX	SS5_PROX:INTRON	CPNE7	ENSG00000178773.15	ENST00000319518.13:ENST00000268720.9:ENST00000529800.5:ENST00000568977.1:ENST00000566398.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	29	2	1.46969	2.3011150000000002	3.13254	0.0586892	0.00310655	0.167915	0.0512344
chr3	172055734	172055834	1559705	0	+	0.42	(0.408,0.44]	chr3	161527	84	INTRON	INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000421757.5:ENST00000469491.5:ENST00000336824.8:ENST00000423424.5:ENST00000416957.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	53	2	2.26792	2.3011150000000002	2.33431	0.0179973	0.0129219	0.106756	0.0990564
chr12	118351123	118351223	5430073	0	-	0.36	(0.35,0.378]	chr12	518768	536	INTRON	INTRON	TAOK3	ENSG00000135090.14	ENST00000392533.8:ENST00000419821.6:ENST00000541186.5:ENST00000541878.5:ENST00000542902.5:ENST00000542532.5:ENST00000541786.5:ENST00000539872.5:ENST00000542692.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	43	2	1.87717	2.301075	2.72498	0.0555068	0.0168499	0.165463	0.11068
chr17	1369408	1369508	6699300	0	-	0.53	(0.515,0.57]	chr17	655547	3	SS5_PROX	SS5_PROX:INTRON	YWHAE	ENSG00000108953.17	ENST00000264335.13:ENST00000571732.5:ENST00000573026.1:ENST00000573196.5:ENST00000575977.1:ENST00000469398.5:ENST00000486241.1:ENST00000489287.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	46	2	2.11313	2.301075	2.48902	0.0256725	0.00760558	0.133676	0.0749571
chr17	76401485	76401563	6842604	0	-	0.358974	(0.35,0.378]	chr17	676825	4	SS3_PROX	SS3_PROX:INTRON	UBE2O	ENSG00000175931.13	ENST00000319380.12:ENST00000586409.5:ENST00000590658.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	43	2	1.87717	2.301075	2.72498	0.0555068	0.0168499	0.165463	0.11068
chr19	38651656	38651756	7065768	0	+	0.25	[0,0.28]	chr19	705486	30	INTRON	INTRON	ACTN4	ENSG00000130402.13	ENST00000252699.7:ENST00000588618.5:ENST00000440400.2:ENST00000424234.7:ENST00000589528.1:ENST00000390009.7:ENST00000495553.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	56	2	2.10688	2.301075	2.49527	0.0436497	0.0307985	0.14882	0.143385
chr6	7287712	7287812	3053124	0	-	0.24	[0,0.28]	chr6	283931	67	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	SSR1	ENSG00000124783.14	ENST00000474597.5:ENST00000650389.1:ENST00000475213.1:ENST00000244763.9:ENST00000397511.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	56	2	2.10688	2.301075	2.49527	0.0436497	0.0307985	0.14882	0.143385
chrX	44922384	44922484	7649094	0	+	0.27	[0,0.28]	chrX	782726	480	INTRON	INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000675440.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000621147.5:ENST00000475233.1:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	56	2	2.10688	2.301075	2.49527	0.0436497	0.0307985	0.14882	0.143385
chr11	47545413	47545513	4950326	0	-	0.34	(0.32,0.35]	chr11	464246	208	INTRON	INTRON	CELF1	ENSG00000149187.19	ENST00000310513.10:ENST00000687097.1:ENST00000531165.5:ENST00000530151.5:ENST00000525841.5:ENST00000526419.1	protein_coding	protein_coding	protein_coding	protein_coding	6	89	2	2.09793	2.30102	2.50411	0.0156788	0.00267989	0.101453	0.0478767
chr3	125517932	125518032	1807842	0	-	0.42	(0.408,0.44]	chr3	181558	128	INTRON	INTRON	SNX4	ENSG00000114520.11	ENST00000251775.9:ENST00000471751.5:ENST00000473417.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	54	2	1.70409	2.30102	2.89795	0.028108	0.0110735	0.137011	0.0873897
chr1	246888717	246888817	681513	0	-	0.47	(0.44,0.476]	chr1	79950	2	SS3_PROX	SS3_PROX:INTRON	AHCTF1	ENSG00000153207.16	ENST00000648844.2:ENST00000326225.3:ENST00000366508.5:ENST00000470300.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	64	2	2.13779	2.301005	2.46422	0.0264596	0.00282908	0.122506	0.0491595
chr2	15432780	15432880	1071862	0	-	0.37	(0.35,0.378]	chr2	114368	46	INTRON	INTRON	NBAS	ENSG00000151779.13	ENST00000281513.10	protein_coding	protein_coding	protein_coding	protein_coding	5	69	2	2.28125	2.30093	2.32061	0.0182271	0.00545884	0.107842	0.0669938
chr2	15558834	15558934	1073143	0	-	0.52	(0.515,0.57]	chr2	114486	2	SS3_PROX	SS3_PROX:INTRON	NBAS	ENSG00000151779.13	ENST00000281513.10	protein_coding	protein_coding	protein_coding	protein_coding	7	69	2	2.01561	2.3009250000000003	2.58624	0.00526399	0.00518674	0.0654085	0.0633874
chr8	116716721	116716821	4033836	0	-	0.34	(0.32,0.35]	chr8	368058	191	INTRON	INTRON	EIF3H	ENSG00000147677.12	ENST00000521861.6:ENST00000276682.8:ENST00000518949.5:ENST00000518995.5:ENST00000522800.5:ENST00000518034.5:ENST00000517974.1:ENST00000522453.1:ENST00000519046.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	46	2	1.88909	2.30089	2.71269	0.0553737	0.0181461	0.165463	0.114853
chr2	58218426	58218524	1126521	0	-	0.306122	(0.28,0.32]	chr2	120943	6	INTRON	INTRON	FANCL	ENSG00000115392.13	ENST00000696400.1:ENST00000403295.8:ENST00000696492.1:ENST00000427708.7:ENST00000696314.1:ENST00000696315.1:ENST00000696454.1:ENST00000696508.1:ENST00000696548.1:ENST00000696542.1:ENST00000696319.1:ENST00000403676.6:ENST00000696433.1:ENST00000696434.1:ENST00000696499.1:ENST00000696564.1:ENST00000402135.8:ENST00000696546.1:ENST00000233741.9:ENST00000696316.1:ENST00000696378.1:ENST00000696435.1:ENST00000696493.1:ENST00000696543.1:ENST00000696544.1:ENST00000696545.1:ENST00000696565.1:ENST00000696620.1:ENST00000696621.1:ENST00000696635.1:ENST00000696364.1:ENST00000696634.1:ENST00000696317.1:ENST00000696622.1:ENST00000696467.1:ENST00000696547.1:ENST00000449070.6:ENST00000696305.1:ENST00000417361.2:ENST00000696338.1:ENST00000696361.1:ENST00000696318.1:ENST00000696371.1:ENST00000696409.1:ENST00000696410.1:ENST00000696455.1:ENST00000696468.1:ENST00000696527.1:ENST00000696567.1:ENST00000696324.1:ENST00000696566.1:ENST00000696623.1:ENST00000446381.6:ENST00000696469.1:ENST00000696624.1:ENST00000696411.1:ENST00000470506.2:ENST00000696358.1:ENST00000696373.1:ENST00000696394.1:ENST00000696320.1:ENST00000696395.1:ENST00000696341.1:ENST00000696340.1:ENST00000696374.1:ENST00000696396.1:ENST00000696342.1:ENST00000696325.1:ENST00000696399.1:ENST00000696398.1:ENST00000696306.1:ENST00000696397.1:ENST00000696360.1:ENST00000696344.1:ENST00000696343.1:ENST00000696362.1:ENST00000696528.1:ENST00000696326.1:ENST00000696625.1:ENST00000696510.1:ENST00000696438.1:ENST00000696496.1:ENST00000696509.1:ENST00000696569.1:ENST00000696457.1:ENST00000696458.1:ENST00000696473.1:ENST00000696495.1:ENST00000696415.1:ENST00000696472.1:ENST00000696459.1:ENST00000696416.1:ENST00000696530.1:ENST00000696460.1:ENST00000696570.1:ENST00000696531.1:ENST00000696307.1:ENST00000696345.1:ENST00000696377.1:ENST00000696417.1:ENST00000696594.1:ENST00000696595.1:ENST00000696379.1:ENST00000696346.1:ENST00000696380.1:ENST00000696347.1:ENST00000696461.1:ENST00000696596.1:ENST00000696549.1:ENST00000696597.1:ENST00000696550.1:ENST00000696598.1:ENST00000696321.1:ENST00000696476.1:ENST00000696477.1:ENST00000696511.1:ENST00000481670.3:ENST00000696403.1:ENST00000696551.1:ENST00000696308.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	53	2	2.22069	2.3008499999999996	2.38101	0.0456017	0.0243177	0.164236	0.12011
chr8	41655340	41655436	3937592	0	-	0.385417	(0.378,0.408]	chr8	360883	23	UTR3	UTR3:EXON_MRNA	ANK1	ENSG00000029534.21	ENST00000347528.8:ENST00000265709.13:ENST00000289734.13:ENST00000522543.5:ENST00000522231.5:ENST00000520299.5:ENST00000314214.12:ENST00000645531.1	protein_coding	protein_coding	protein_coding	protein_coding	12	154	2	1.93616	2.30078	2.6654	0.00388841	3.5967e-4	0.0567949	0.0175552
chr8	91082715	91082814	3797123	0	+	0.353535	(0.35,0.378]	chr8	351901	16	INTRON	INTRON	OTUD6B	ENSG00000155100.11	ENST00000285420.8:ENST00000617869.4:ENST00000615618.1:ENST00000522894.5:ENST00000404789.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	69	2	2.11531	2.30077	2.48623	0.0119629	0.00938784	0.0962115	0.0817766
chr15	87663078	87663178	6256185	0	-	0.43	(0.408,0.44]	chr15	596826	1197	INTRON	INTRON	ENSG00000259560	ENSG00000259560.2	ENST00000665121.1:ENST00000560439.1	lncRNA	lncRNA	lncRNA	lncRNA	13	148	2	1.60528	2.300745	2.99621	0.0128492	6.51509e-5	0.0926667	0.00669119
chr19	28514125	28514225	7166236	0	-	0.62	(0.57,1]	chr19	724189	459	INTRON	INTRON	ENSG00000283403:ENSG00000267243	ENSG00000283403.1:ENSG00000267243.6	ENST00000592347.5:ENST00000593065.5	lncRNA	lncRNA	lncRNA	lncRNA	12	74	2	2.03449	2.300735	2.56698	0.00185583	2.40979e-4	0.0389518	0.0136674
chr1	71066031	71066124	482870	0	-	0.225806	[0,0.28]	chr1	57844	4	EXON_LNCRNA	EXON_LNCRNA:SS3_PROX:INTRON	ZRANB2	ENSG00000132485.14	ENST00000370920.8:ENST00000477096.1:ENST00000254821.10:ENST00000487510.1:ENST00000479947.1:ENST00000473260.1:ENST00000611683.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	128	2	1.88199	2.3007049999999998	2.71942	0.0234167	0.00139528	0.118544	0.0341592
chr19	55006382	55006478	7100221	0	+	0.354167	(0.35,0.378]	chr19	712211	3	EXON_LNCRNA	EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GP6-AS1	ENSG00000267265.6	ENST00000593060.5:ENST00000690314.1:ENST00000586845.1	lncRNA	lncRNA	lncRNA	lncRNA	6	83	2	2.13524	2.300675	2.46611	0.0130865	0.00297318	0.0934394	0.0501309
chr20	36773293	36773393	7337880	0	-	0.62	(0.57,1]	chr20	747694	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	DSN1	ENSG00000149636.16	ENST00000426836.5:ENST00000373734.8:ENST00000480153.5:ENST00000473615.5:ENST00000373750.9:ENST00000448110.6:ENST00000373740.7:ENST00000447406.1:ENST00000438549.5:ENST00000492703.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	22	2	2.23711	2.30061	2.36411	0.0408868	0.0172108	0.161534	0.104099
chrX	113910899	113910999	7867148	0	-	0.63	(0.57,1]	chrX	801544	2947	EXON_LNCRNA	EXON_LNCRNA:INTRON	XACT	ENSG00000241743.4	ENST00000468762.3:ENST00000674361.1	lncRNA	lncRNA	lncRNA	lncRNA	3	22	2	2.23711	2.30061	2.36411	0.0408868	0.0172108	0.161534	0.104099
chr10	68427257	68427356	4639308	0	-	0.515152	(0.476,0.515]	chr10	426660	40	INTRON	INTRON	DNA2	ENSG00000138346.15	ENST00000358410.8:ENST00000551118.6:ENST00000399179.6:ENST00000399180.3:ENST00000440722.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	41	2	2.21677	2.300595	2.38442	0.0417472	0.0207026	0.161736	0.110999
chr7	152075280	152075380	3450010	0	+	0.4	(0.378,0.408]	chr7	322444	1	SS5_PROX	SS5_PROX:INTRON	GALNT11	ENSG00000178234.13	ENST00000430044.7:ENST00000482812.1:ENST00000431668.1:ENST00000446096.5:ENST00000447778.5:ENST00000423337.5:ENST00000434507.5:ENST00000415421.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	66	2	1.73164	2.300595	2.86955	0.0441773	0.00159247	0.149888	0.0367961
chr21	46196470	46196569	7470539	0	-	0.585859	(0.57,1]	chr21	761463	2	SS3_PROX	SS3_PROX:INTRON	LSS	ENSG00000160285.15	ENST00000356396.8:ENST00000397728.8:ENST00000457828.6:ENST00000522411.5	protein_coding	protein_coding	protein_coding	protein_coding	6	40	2	2.01216	2.30057	2.58898	0.0163389	0.00134929	0.101571	0.0338207
chr14	58245294	58245386	5730906	0	+	0.532609	(0.515,0.57]	chr14	544075	3	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	PSMA3	ENSG00000100567.13	ENST00000216455.9:ENST00000554812.5:ENST00000553665.5:ENST00000557087.5:ENST00000555931.5:ENST00000554456.1:ENST00000412908.6:ENST00000555743.1:ENST00000557508.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	34	2	2.26012	2.3004949999999997	2.34087	0.0469761	0.0160033	0.151917	0.109464
chr3	37323287	37323387	1396569	0	+	0.52	(0.515,0.57]	chr3	146409	3	SS3_PROX	SS3_PROX:INTRON	GOLGA4	ENSG00000144674.17	ENST00000444882.5:ENST00000356847.8:ENST00000361924.7:ENST00000429018.5:ENST00000437131.1:ENST00000497537.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	34	2	2.26012	2.3004949999999997	2.34087	0.0469761	0.0160033	0.151917	0.109464
chr2	208331194	208331289	992676	0	+	0.347368	(0.32,0.35]	chr2	106722	1	INTRON	INTRON	PIKFYVE	ENSG00000115020.17	ENST00000264380.9:ENST00000452564.1	protein_coding	protein_coding	protein_coding	protein_coding	4	63	2	1.77704	2.300445	2.82385	0.0719969	0.00217392	0.187322	0.043502
chr1	222492697	222492796	641416	0	-	0.363636	(0.35,0.378]	chr1	75672	1	INTRON	INTRON	ENSG00000276997	ENSG00000276997.4	ENST00000613697.1:ENST00000619187.4:ENST00000620399.1	lncRNA	lncRNA	lncRNA	lncRNA	4	51	2	1.87586	2.300415	2.72497	0.0268864	0.0198266	0.135275	0.109608
chr11	2984411	2984510	4891919	0	-	0.535354	(0.515,0.57]	chr11	458365	2	INTRON	INTRON	NAP1L4	ENSG00000205531.13	ENST00000620138.4:ENST00000380542.9:ENST00000526115.5:ENST00000532325.6:ENST00000448187.5:ENST00000399614.6:ENST00000430811.5:ENST00000529361.5:ENST00000528968.5:ENST00000530064.5:ENST00000526842.5:ENST00000531291.5:ENST00000455338.6:ENST00000534372.1	protein_coding	protein_coding	protein_coding	protein_coding	5	54	2	2.27116	2.300415	2.32967	0.0133671	0.00601759	0.0946278	0.0700813
chr20	49234085	49234180	7284483	0	+	0.368421	(0.35,0.378]	chr20	741007	5	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	DDX27	ENSG00000124228.15	ENST00000484427.5:ENST00000618172.5:ENST00000471144.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	51	2	1.87586	2.300415	2.72497	0.0268864	0.0198266	0.135275	0.109608
chr8	67049445	67049544	3961710	0	-	0.373737	(0.35,0.378]	chr8	363460	12	INTRON	INTRON	COPS5	ENSG00000121022.14	ENST00000517736.5:ENST00000521509.5:ENST00000357849.9:ENST00000523086.5:ENST00000518374.5:ENST00000521386.5:ENST00000523890.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	51	2	1.87586	2.300415	2.72497	0.0268864	0.0198266	0.135275	0.109608
chrX	120436591	120436690	7876155	0	-	0.313131	(0.28,0.32]	chrX	802096	2	UTR3	UTR3:EXON_MRNA:INTRON	LAMP2	ENSG00000005893.16	ENST00000200639.9:ENST00000434600.6:ENST00000486593.5:ENST00000371335.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	61	2	2.14534	2.300395	2.45545	0.0438092	0.0117054	0.14901	0.0962115
chr21	36359260	36359357	7404094	0	+	0.402062	(0.378,0.408]	chr21	754334	22	INTRON	INTRON	MORC3	ENSG00000159256.13	ENST00000400485.6:ENST00000487909.5:ENST00000485299.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	66	2	1.98888	2.30038	2.61188	0.0205239	0.0047055	0.110999	0.0631419
chr5	138400212	138400312	2495341	0	+	0.4	(0.378,0.408]	chr5	238534	2	SS5_PROX	SS5_PROX:INTRON	KDM3B	ENSG00000120733.14	ENST00000314358.10:ENST00000510866.5:ENST00000542866.2:ENST00000507996.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	66	2	1.98888	2.30038	2.61188	0.0205239	0.0047055	0.110999	0.0631419
chr2	158484297	158484397	897413	0	+	0.57	(0.515,0.57]	chr2	99341	256	INTRON	INTRON	PKP4	ENSG00000144283.23	ENST00000389759.8:ENST00000426248.7:ENST00000389757.7:ENST00000457109.5:ENST00000452162.5:ENST00000411900.5:ENST00000421462.5:ENST00000462335.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	45	2	2.27238	2.30037	2.32836	0.0161808	0.0126662	0.101453	0.0982897
chr10	17445265	17445365	4568925	0	-	0.42	(0.408,0.44]	chr10	421387	543	INTRON	INTRON	ST8SIA6	ENSG00000148488.17	ENST00000377602.5:ENST00000648997.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	48	2	1.64062	2.300345	2.96007	0.0557275	0.00753901	0.165463	0.0773151
chr8	31045672	31045772	3728050	0	+	0.37	(0.35,0.378]	chr8	346522	113	INTRON	INTRON	WRN	ENSG00000165392.11	ENST00000650667.1:ENST00000298139.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	51	2	1.71046	2.300245	2.89003	0.0441269	0.0122391	0.162255	0.0910127
chr11	86038899	86038999	5014541	0	-	0.45	(0.44,0.476]	chr11	473022	69	INTRON	INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000630913.2:ENST00000528398.5:ENST00000356360.9:ENST00000534412.5:ENST00000531558.1:ENST00000531930.5:ENST00000532041.5:ENST00000525162.5:ENST00000528256.1:ENST00000528411.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	65	2	1.37831	2.300115	3.22192	0.0447298	0.00360821	0.163255	0.0533855
chr7	138543985	138544085	3435486	0	+	0.46	(0.44,0.476]	chr7	319997	48	INTRON	INTRON	TRIM24	ENSG00000122779.18	ENST00000343526.9:ENST00000415680.6:ENST00000497516.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	66	2	1.57262	2.300065	3.02751	0.0230575	0.00715968	0.126603	0.0723634
chr1	114719115	114719207	528212	0	-	0.5	(0.476,0.515]	chr1	62240	5	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CSDE1	ENSG00000009307.17	ENST00000339438.10:ENST00000610726.5:ENST00000692719.1:ENST00000358528.9:ENST00000688211.1:ENST00000438362.7:ENST00000689217.1:ENST00000689989.1:ENST00000686025.1:ENST00000686781.1:ENST00000686123.1:ENST00000684913.1:ENST00000686235.1:ENST00000693467.1:ENST00000689732.1:ENST00000693644.1:ENST00000687759.1:ENST00000692044.1:ENST00000689885.1:ENST00000691403.1:ENST00000692629.1:ENST00000690013.1:ENST00000690420.1:ENST00000692950.1:ENST00000686667.1:ENST00000691032.1:ENST00000685676.1:ENST00000529046.6:ENST00000692672.1:ENST00000691377.1:ENST00000689631.1:ENST00000688611.1:ENST00000690207.1:ENST00000693311.1:ENST00000689510.1:ENST00000686581.1:ENST00000689727.1:ENST00000690784.1:ENST00000483030.2:ENST00000687548.1:ENST00000689573.1:ENST00000261443.9:ENST00000530886.5:ENST00000369530.5:ENST00000534699.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	72	2	1.63187	2.300055	2.96824	0.037661	9.98194e-4	0.14058	0.0290732
chr1	39859415	39859514	428030	0	-	0.515152	(0.476,0.515]	chr1	52020	16	INTRON	INTRON	TRIT1	ENSG00000043514.17	ENST00000316891.10:ENST00000648678.1:ENST00000537440.5:ENST00000372818.5:ENST00000462797.5:ENST00000441669.6:ENST00000495175.6:ENST00000491865.5:ENST00000541099.5:ENST00000492612.6:ENST00000489945.5:ENST00000486825.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	72	2	1.78917	2.2999650000000003	2.81076	0.022887	0.00203568	0.118056	0.0417667
chr16	2979147	2979228	6432868	0	-	0.481481	(0.476,0.515]	chr16	619100	1	SS5_PROX	SS5_PROX:INTRON	PKMYT1	ENSG00000127564.17	ENST00000431515.6:ENST00000440027.6:ENST00000262300.13:ENST00000574385.5:ENST00000574730.5:ENST00000573944.5:ENST00000576268.1:ENST00000574415.5:ENST00000575632.5:ENST00000572059.1:ENST00000572619.1	protein_coding	protein_coding	protein_coding	protein_coding	3	42	2	2.28264	2.29995	2.31726	0.0534132	0.015077	0.179876	0.0994339
chr3	180954935	180955034	1569040	0	+	0.272727	[0,0.28]	chr3	162413	7	INTRON	INTRON	FXR1	ENSG00000114416.18	ENST00000305586.11:ENST00000475315.5:ENST00000357559.9:ENST00000468861.5:ENST00000491062.5:ENST00000445140.6:ENST00000472339.5:ENST00000480918.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	102	2	1.32273	2.299905	3.27708	0.0508852	0.00517359	0.176224	0.0631676
chrX	153739277	153739376	7911088	0	-	0.575758	(0.57,1]	chrX	805122	3	INTRON	INTRON	PLXNB3-AS1	ENSG00000232725.1	ENST00000434284.1	lncRNA	lncRNA	lncRNA	lncRNA	6	41	2	1.83769	2.2998950000000002	2.7621000000000002	0.0297587	5.29607e-4	0.12908	0.0207276
chr2	70220674	70220773	1152176	0	-	0.343434	(0.32,0.35]	chr2	123065	33	INTRON	INTRON	C2orf42:TIA1	ENSG00000115998.8:ENSG00000116001.17	ENST00000470096.1:ENST00000415783.6:ENST00000433529.7:ENST00000282574.8:ENST00000445587.5:ENST00000454815.6:ENST00000482876.5:ENST00000477415.5:ENST00000496096.5:ENST00000416149.6:ENST00000474699.1:ENST00000474809.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	118	2	2.27097	2.29988	2.32879	0.00373122	0.00347642	0.0540643	0.0535844
chr5	72892476	72892557	2387905	0	+	0.395062	(0.378,0.408]	chr5	230456	2	INTRON	INTRON	TNPO1	ENSG00000083312.19	ENST00000680533.1:ENST00000337273.10:ENST00000680025.1:ENST00000523768.5:ENST00000681711.1:ENST00000679378.1:ENST00000506351.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	49	2	1.99678	2.29987	2.60296	0.0267851	0.0177959	0.123349	0.113452
chr1	65261412	65261511	135605	0	+	0.343434	(0.32,0.35]	chr1	15341	64	INTRON	INTRON	DNAJC6	ENSG00000116675.16	ENST00000463018.5:ENST00000494710.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	62	2	1.88909	2.29981	2.71053	0.0553737	0.00346747	0.165463	0.0539802
chr1	202728840	202728937	619906	0	-	0.329897	(0.32,0.35]	chr1	73525	25	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	KDM5B	ENSG00000117139.18	ENST00000367265.9:ENST00000648676.1:ENST00000648338.1:ENST00000472822.6:ENST00000649339.1:ENST00000649542.1:ENST00000647757.1:ENST00000649400.1:ENST00000647747.1:ENST00000367264.7:ENST00000648473.1:ENST00000650569.1:ENST00000648056.1:ENST00000649230.1:ENST00000650506.1:ENST00000649770.1:ENST00000491153.2:ENST00000648469.1:ENST00000498276.2:ENST00000650417.1:ENST00000647657.1:ENST00000649089.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	62	2	1.88909	2.29981	2.71053	0.0553737	0.00346747	0.165463	0.0539802
chr1	20777250	20777348	389765	0	-	0.295918	(0.28,0.32]	chr1	46569	1	INTRON	INTRON	HP1BP3	ENSG00000127483.19	ENST00000438032.6:ENST00000312239.10:ENST00000424732.5:ENST00000417710.5:ENST00000487117.1:ENST00000375000.5:ENST00000437575.5:ENST00000419490.5:ENST00000414993.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	156	2	2.19692	2.29977	2.40262	0.00700822	7.45509e-4	0.0718189	0.0250079
chr3	195336179	195336273	1894838	0	-	0.457447	(0.44,0.476]	chr3	189648	4	EXON_MRNA	EXON_MRNA:INTRON	ACAP2	ENSG00000114331.16	ENST00000326793.11:ENST00000635383.1:ENST00000439758.3:ENST00000471593.1:ENST00000423531.3:ENST00000480906.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	40	2	2.20949	2.29976	2.39003	0.0672585	0.0106488	0.183051	0.0915714
chrX	47161045	47161144	7655236	0	+	0.454545	(0.44,0.476]	chrX	783085	132	INTRON	INTRON	RBM10	ENSG00000182872.16	ENST00000377604.8:ENST00000345781.10:ENST00000628161.2:ENST00000329236.8	protein_coding	protein_coding	protein_coding	protein_coding	3	40	2	2.20949	2.29976	2.39003	0.0672585	0.0106488	0.183051	0.0915714
chr6	158561231	158561331	3021610	0	+	0.4	(0.378,0.408]	chr6	281792	6	INTRON	INTRON	TMEM181	ENSG00000146433.10	ENST00000367090.4:ENST00000684151.1	protein_coding	protein_coding	protein_coding	protein_coding	10	128	2	2.20258	2.299735	2.39689	0.00323986	9.29812e-4	0.0507788	0.0278746
chrX	44932084	44932184	7649191	0	+	0.4	(0.378,0.408]	chrX	782726	577	INTRON	INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000675440.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000621147.5:ENST00000475233.1:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	104	2	1.95026	2.299735	2.64921	0.0138007	4.93004e-4	0.095051	0.0200992
chr2	177397477	177397577	926129	0	+	0.34	(0.32,0.35]	chr2	101782	14	INTRON	INTRON	AGPS	ENSG00000018510.18	ENST00000679459.1:ENST00000637633.2:ENST00000680770.1:ENST00000680705.1:ENST00000681752.1:ENST00000460342.2:ENST00000681565.1:ENST00000680893.1:ENST00000681032.1:ENST00000679421.1:ENST00000680910.1:ENST00000680677.1:ENST00000409888.1:ENST00000642466.2:ENST00000264167.11:ENST00000680155.1:ENST00000679478.1:ENST00000681449.1:ENST00000681891.1:ENST00000681028.1:ENST00000679639.1:ENST00000680028.1:ENST00000679994.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	90	2	2.2643	2.2997199999999998	2.33514	0.00712852	0.00690847	0.0756118	0.0718189
chr2	53955671	53955770	1120425	0	-	0.555556	(0.515,0.57]	chr2	120102	60	INTRON	INTRON	PSME4	ENSG00000068878.15	ENST00000404125.6:ENST00000389993.7:ENST00000481518.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	83	2	1.96678	2.29964	2.6325	0.00439001	0.00296583	0.0585064	0.0500431
chr7	141752980	141753080	3440250	0	+	0.45	(0.44,0.476]	chr7	320701	22	INTRON	INTRON	SSBP1	ENSG00000106028.11	ENST00000465582.5	protein_coding	protein_coding	protein_coding	protein_coding	5	54	2	1.7965	2.299625	2.80275	0.0205549	0.0146513	0.122348	0.0982604
chr7	121078345	121078444	3394540	0	+	0.353535	(0.35,0.378]	chr7	317710	13	INTRON	INTRON	CPED1	ENSG00000106034.18	ENST00000310396.10:ENST00000428526.5:ENST00000450913.6:ENST00000520801.5:ENST00000423795.5:ENST00000443817.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	30	391	2	2.19056	2.29962	2.40868	4.70366e-4	4.24701e-5	0.0200948	0.00526976
chr1	231254731	231254831	337156	0	+	0.49	(0.476,0.515]	chr1	39184	32	INTRON	INTRON	GNPAT	ENSG00000116906.13	ENST00000436239.5:ENST00000366647.9:ENST00000644483.1:ENST00000416000.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	48	2	1.79187	2.29958	2.80729	0.0362169	0.0126008	0.138959	0.0980703
chr9	130748354	130748454	4214208	0	+	0.35	(0.32,0.35]	chr9	386427	335	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000393293.4	protein_coding	protein_coding	protein_coding	protein_coding	31	437	2	2.29007	2.2995650000000003	2.30906	3.09761e-4	1.01613e-4	0.0162047	0.00850967
chr12	45861548	45861648	5124052	0	+	0.39	(0.378,0.408]	chr12	483381	2	INTRON	INTRON	ARID2	ENSG00000189079.17	ENST00000334344.11:ENST00000422737.6:ENST00000479608.5:ENST00000444670.5:ENST00000457135.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	41	2	1.88729	2.29956	2.71183	0.0532327	0.0170789	0.162538	0.110899
chr22	40897000	40897100	7520895	0	+	0.39	(0.378,0.408]	chr22	768445	101	INTRON	INTRON	XPNPEP3	ENSG00000196236.13	ENST00000428799.1:ENST00000357137.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	41	2	1.88729	2.29956	2.71183	0.0532327	0.0170789	0.162538	0.110899
chr9	33259408	33259502	4244157	0	-	0.404255	(0.378,0.408]	chr9	390154	5	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	BAG1	ENSG00000107262.26	ENST00000634734.3:ENST00000467389.6:ENST00000379701.5:ENST00000379704.7:ENST00000379707.7:ENST00000473464.2:ENST00000473781.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	41	2	1.88729	2.29956	2.71183	0.0532327	0.0170789	0.162538	0.110899
chr9	91822391	91822491	4283986	0	-	0.38	(0.378,0.408]	chr9	393909	462	INTRON	INTRON	ROR2	ENSG00000169071.15	ENST00000375715.5:ENST00000375708.4:ENST00000550066.5:ENST00000495386.5:ENST00000546883.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	41	2	1.88729	2.29956	2.71183	0.0532327	0.0170789	0.162538	0.110899
chr7	111272896	111272996	3621211	0	-	0.37	(0.35,0.378]	chr7	337093	3090	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	60	2	1.49028	2.299455	3.10863	0.0590834	0.00470896	0.168067	0.0631419
chr3	177149005	177149105	1871961	0	-	0.36	(0.35,0.378]	chr3	187422	129	INTRON	INTRON	TBL1XR1	ENSG00000177565.18	ENST00000457928.7:ENST00000430069.5:ENST00000673974.1:ENST00000352800.10:ENST00000422442.6:ENST00000428970.5:ENST00000424913.5:ENST00000437738.5:ENST00000431421.5:ENST00000635794.1:ENST00000630796.2:ENST00000450267.5:ENST00000630833.2:ENST00000431674.5:ENST00000422066.5:ENST00000443315.5:ENST00000627825.2:ENST00000427349.5:ENST00000413084.5:ENST00000637137.1:ENST00000491623.2:ENST00000637544.1:ENST00000636187.1:ENST00000636912.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	71	2	1.42644	2.2994399999999997	3.17244	0.0390715	0.00487788	0.161228	0.0607461
chr5	109807076	109807176	2450196	0	+	0.4	(0.378,0.408]	chr5	234656	24	INTRON	INTRON	MAN2A1	ENSG00000112893.10	ENST00000261483.5:ENST00000502261.5:ENST00000508043.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	49	2	1.59317	2.299425	3.00568	0.0603812	0.00811866	0.19151	0.0766625
chr19	213547	213644	7108828	0	-	0.340206	(0.32,0.35]	chr19	713694	13	INTRON	INTRON	LINC01002	ENSG00000282508.2	ENST00000631644.1:ENST00000632624.2:ENST00000633109.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	4	62	2	2.25173	2.2994149999999998	2.3471	0.0180122	0.0156413	0.114436	0.101393
chr7	134008137	134008236	3425746	0	+	0.323232	(0.32,0.35]	chr7	319452	3	SS5_PROX	SS5_PROX:INTRON	EXOC4	ENSG00000131558.15	ENST00000253861.5	protein_coding	protein_coding	protein_coding	protein_coding	4	62	2	2.25173	2.2994149999999998	2.3471	0.0180122	0.0156413	0.114436	0.101393
chr7	1456684	1456784	3462252	0	-	0.53	(0.515,0.57]	chr7	323713	60	INTRON	INTRON	MICALL2	ENSG00000164877.19	ENST00000472100.5:ENST00000297508.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	11	115	2	2.09303	2.29935	2.50567	0.00230048	5.37609e-4	0.0439974	0.0214775
chr1	36230850	36230950	72995	0	+	0.42	(0.408,0.44]	chr1	9371	50	INTRON	INTRON	THRAP3	ENSG00000054118.15	ENST00000469141.6:ENST00000648638.1:ENST00000354618.10	protein_coding	protein_coding	protein_coding	protein_coding	4	48	2	2.08376	2.29934	2.51492	0.0329839	0.0129886	0.133816	0.0991656
chr18	2663257	2663357	6864935	0	+	0.44	(0.408,0.44]	chr18	679940	66	INTRON	INTRON	SMCHD1	ENSG00000101596.17	ENST00000320876.11:ENST00000688342.1:ENST00000684915.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	47	2	1.75791	2.29934	2.84077	0.0378795	0.0132196	0.157034	0.0940535
chr18	9580153	9580252	6945961	0	-	0.414141	(0.408,0.44]	chr18	686991	26	INTRON	INTRON	PPP4R1	ENSG00000154845.16	ENST00000400555.7:ENST00000400556.8:ENST00000285124.12:ENST00000580583.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	48	2	2.08376	2.29934	2.51492	0.0329839	0.0129886	0.133816	0.0991656
chr5	126795107	126795207	2479355	0	+	0.41	(0.408,0.44]	chr5	236699	169	INTRON	INTRON	LMNB1	ENSG00000113368.12	ENST00000460265.5:ENST00000261366.10:ENST00000504788.5:ENST00000472034.5:ENST00000492190.5:ENST00000395354.1:ENST00000463908.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	47	2	1.75791	2.29934	2.84077	0.0378795	0.0132196	0.157034	0.0940535
chr10	73071728	73071828	4647591	0	-	0.29	(0.28,0.32]	chr10	427537	3	SS5_PROX	SS5_PROX:INTRON	P4HA1	ENSG00000122884.13	ENST00000394890.7:ENST00000307116.6:ENST00000373008.6:ENST00000440381.5:ENST00000263556.3	protein_coding	protein_coding	protein_coding	protein_coding	3	50	2	2.2609	2.299305	2.33771	0.0671429	0.0142701	0.183051	0.103838
chr20	32774132	32774231	7256766	0	+	0.424242	(0.408,0.44]	chr20	737113	109	INTRON	INTRON	DNMT3B	ENSG00000088305.19	ENST00000696232.1:ENST00000328111.6:ENST00000696231.1:ENST00000348286.6:ENST00000353855.6:ENST00000696233.1:ENST00000443239.7:ENST00000696234.1:ENST00000696235.1:ENST00000456297.6:ENST00000696236.1:ENST00000696237.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	54	2	1.81572	2.299305	2.78289	0.0626779	0.0022785	0.175915	0.0437013
chr3	9420780	9420879	1359117	0	+	0.292929	(0.28,0.32]	chr3	142659	47	INTRON	INTRON	SETD5	ENSG00000168137.20	ENST00000402198.7:ENST00000431285.5:ENST00000683012.1:ENST00000463180.5:ENST00000478475.5:ENST00000415650.5:ENST00000682536.1:ENST00000663774.1:ENST00000665872.1:ENST00000666307.1:ENST00000693430.1:ENST00000691925.1:ENST00000684606.1:ENST00000691175.1:ENST00000688835.1:ENST00000683262.1:ENST00000443339.5:ENST00000406341.5:ENST00000670063.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	50	2	2.2609	2.299305	2.33771	0.0671429	0.0142701	0.183051	0.103838
chr9	131135284	131135378	4215722	0	+	0.468085	(0.44,0.476]	chr9	386540	4	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NUP214	ENSG00000126883.19	ENST00000695497.1:ENST00000695498.1:ENST00000695496.1:ENST00000695495.1:ENST00000695494.1:ENST00000695493.1:ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000525561.2:ENST00000651022.1:ENST00000695499.1:ENST00000530843.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	18	209	2	1.66894	2.29927	2.9296	0.00492905	3.98378e-5	0.0646039	0.00539487
chr11	46841326	46841426	4948717	0	-	0.37	(0.35,0.378]	chr11	463857	146	INTRON	INTRON	CKAP5	ENSG00000175216.15	ENST00000529230.6:ENST00000312055.9:ENST00000525248.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	69	2	1.87726	2.299095	2.72093	0.0297629	0.00314173	0.12908	0.0514466
chr1	204550277	204550376	297771	0	+	0.464646	(0.44,0.476]	chr1	34331	7	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	MDM4	ENSG00000198625.14	ENST00000367183.7:ENST00000391947.6:ENST00000454264.6:ENST00000612738.4:ENST00000614459.4:ENST00000616250.4:ENST00000367182.8:ENST00000463049.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	97	2	1.92621	2.29895	2.67169	0.00813281	0.00140924	0.0810802	0.0340865
chr6	26126241	26126340	2837014	0	+	0.616162	(0.57,1]	chr6	266010	11	INTRON	INTRON	H2AC6	ENSG00000180573.10	ENST00000314088.6:ENST00000602637.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	46	2	1.49341	2.29892	3.10443	0.0307286	3.67483e-4	0.143385	0.017788000000000002
chr3	183746077	183746176	1580779	0	+	0.555556	(0.515,0.57]	chr3	163062	89	INTRON	INTRON	YEATS2	ENSG00000163872.16	ENST00000305135.10	protein_coding	protein_coding	protein_coding	protein_coding	9	94	2	2.18697	2.298895	2.41082	0.00232379	0.00167359	0.0442989	0.0370386
chr1	65312736	65312836	136122	0	+	0.4	(0.378,0.408]	chr1	15352	24	INTRON	INTRON	DNAJC6	ENSG00000116675.16	ENST00000463018.5:ENST00000494710.6:ENST00000263441.11:ENST00000395325.7:ENST00000483402.1:ENST00000371069.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	20	253	2	2.23742	2.298855	2.36029	4.96152e-4	2.15413e-4	0.0206993	0.0128954
chr7	43723534	43723634	3526319	0	-	0.36	(0.35,0.378]	chr7	328785	117	INTRON	INTRON	COA1	ENSG00000106603.20	ENST00000415076.6:ENST00000446330.6:ENST00000446564.5:ENST00000438444.5:ENST00000223336.11:ENST00000310564.10:ENST00000415798.5:ENST00000431651.5:ENST00000451651.5:ENST00000418140.5:ENST00000448704.5:ENST00000470156.1:ENST00000457939.1:ENST00000420441.1:ENST00000478504.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	58	2	2.23043	2.2986	2.36677	0.0187487	0.0139343	0.117523	0.0957526
chr17	78152591	78152690	6681744	0	+	0.424242	(0.408,0.44]	chr17	652640	53	INTRON	INTRON	C17orf99	ENSG00000187997.12	ENST00000340363.10:ENST00000586999.2:ENST00000591995.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	64	2	2.04611	2.29857	2.55103	0.016628	0.00587353	0.102621	0.0690758
chr14	30927400	30927500	5856875	0	-	0.34	(0.32,0.35]	chr14	556459	79	INTRON	INTRON	STRN3	ENSG00000196792.12	ENST00000355683.9:ENST00000357479.10:ENST00000555358.5:ENST00000366206.2:ENST00000556577.1:ENST00000554991.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	34	2	2.21917	2.2985550000000003	2.37794	0.0641245	0.0498601	0.199279	0.156383
chr17	16163496	16163594	6734711	0	-	0.346939	(0.32,0.35]	chr17	660725	43	INTRON	INTRON	NCOR1	ENSG00000141027.22	ENST00000268712.8:ENST00000395851.5:ENST00000395848.5:ENST00000411510.5:ENST00000582357.5:ENST00000436828.5:ENST00000460276.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	34	2	2.21917	2.2985550000000003	2.37794	0.0641245	0.0498601	0.199279	0.156383
chr19	39837068	39837168	7182540	0	-	0.35	(0.32,0.35]	chr19	726313	4	SS3_PROX	SS3_PROX:INTRON	FBL	ENSG00000105202.9	ENST00000221801.8:ENST00000595545.5:ENST00000593503.5:ENST00000594443.5:ENST00000597224.5:ENST00000601274.5:ENST00000597634.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	34	2	2.21917	2.2985550000000003	2.37794	0.0641245	0.0498601	0.199279	0.156383
chr6	119280696	119280796	3205123	0	-	0.33	(0.32,0.35]	chr6	298310	111	INTRON	INTRON	MAN1A1	ENSG00000111885.7	ENST00000368468.4	protein_coding	protein_coding	protein_coding	protein_coding	2	34	2	2.21917	2.2985550000000003	2.37794	0.0641245	0.0498601	0.199279	0.156383
chr7	121075380	121075480	3394510	0	+	0.28	[0,0.28]	chr7	317706	107	INTRON	INTRON	CPED1	ENSG00000106034.18	ENST00000310396.10:ENST00000428526.5:ENST00000450913.6:ENST00000520801.5:ENST00000423795.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	56	2	2.15457	2.298495	2.44242	0.0491024	0.0269306	0.155269	0.135288
chr18	1316119	1316218	6941340	0	-	0.464646	(0.44,0.476]	chr18	686577	120	INTRON	INTRON	LINC00470	ENSG00000132204.14	ENST00000657423.1:ENST00000657618.1:ENST00000584090.5:ENST00000660947.1:ENST00000669242.1:ENST00000660475.1:ENST00000653775.1:ENST00000661931.1:ENST00000412816.7:ENST00000577867.5:ENST00000584492.5:ENST00000667416.1:ENST00000661852.1:ENST00000657919.1:ENST00000661646.1:ENST00000667776.1:ENST00000654559.1:ENST00000661233.1:ENST00000653213.1:ENST00000659094.1:ENST00000660964.1:ENST00000577403.6:ENST00000660358.1:ENST00000669153.1:ENST00000657121.1:ENST00000655957.1:ENST00000659289.1:ENST00000665133.1:ENST00000671558.1:ENST00000666542.1:ENST00000663512.1:ENST00000582862.6:ENST00000578835.5:ENST00000669312.1:ENST00000581430.5:ENST00000581212.1:ENST00000658090.1	lncRNA	lncRNA	lncRNA	lncRNA	4	57	2	1.85146	2.29846	2.74546	0.0545846	0.00326603	0.182529	0.0508595
chr3	43719344	43719443	1410471	0	+	0.343434	(0.32,0.35]	chr3	147965	9	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	ABHD5	ENSG00000011198.10	ENST00000643520.1:ENST00000649763.1:ENST00000643140.1:ENST00000644371.2:ENST00000646378.1:ENST00000643477.1:ENST00000454293.2:ENST00000642351.1:ENST00000463153.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	70	2	1.65179	2.298445	2.9451	0.0245569	0.011051	0.131869	0.0873897
chr4	2899435	2899534	1915597	0	+	0.393939	(0.378,0.408]	chr4	192316	1	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	ADD1	ENSG00000087274.19	ENST00000683351.1:ENST00000398125.5:ENST00000264758.11:ENST00000508684.5:ENST00000513328.6:ENST00000509039.5:ENST00000503455.6:ENST00000355842.7:ENST00000651918.1:ENST00000503169.5:ENST00000398129.5:ENST00000398123.6:ENST00000506157.1:ENST00000514940.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	98	2	1.73221	2.298425	2.86464	0.00963227	0.00215581	0.086971	0.0417866
chr4	165336991	165337090	2079725	0	+	0.30303	(0.28,0.32]	chr4	205568	30	INTRON	INTRON	MSMO1	ENSG00000052802.13	ENST00000507013.5:ENST00000261507.11:ENST00000393766.6:ENST00000504317.1	protein_coding	protein_coding	protein_coding	protein_coding	8	129	2	1.86858	2.29832	2.72806	0.0214814	4.5306e-4	0.114341	0.0192381
chr6	7117685	7117785	2798462	0	+	0.41	(0.408,0.44]	chr6	263723	86	INTRON	INTRON	RREB1	ENSG00000124782.21	ENST00000379933.7:ENST00000491191.5:ENST00000471433.5:ENST00000379938.7:ENST00000467782.5:ENST00000349384.10:ENST00000334984.10:ENST00000475946.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	114	2	1.82508	2.29831	2.77154	0.0063277	9.14134e-4	0.0722266	0.0278396
chr8	65691571	65691670	3773912	0	+	0.363636	(0.35,0.378]	chr8	349986	16	INTRON	INTRON	MTFR1	ENSG00000066855.16	ENST00000262146.9:ENST00000522239.5:ENST00000523222.5:ENST00000523170.5:ENST00000424808.6:ENST00000517944.5:ENST00000458689.2:ENST00000518800.5:ENST00000518636.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	83	2	2.03027	2.298305	2.56634	0.0185322	0.00190773	0.108861	0.0403772
chr9	131173455	131173554	4216121	0	+	0.464646	(0.44,0.476]	chr9	386613	90	INTRON	INTRON	NUP214	ENSG00000126883.19	ENST00000695497.1:ENST00000695498.1:ENST00000695496.1:ENST00000695495.1:ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000525980.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	65	2	1.81595	2.2982050000000003	2.78046	0.0317953	0.0028389	0.14477	0.0473151
chr14	30931740	30931840	5856920	0	-	0.32	(0.28,0.32]	chr14	556466	4	SS5_PROX	SS5_PROX:INTRON	STRN3	ENSG00000196792.12	ENST00000355683.9:ENST00000357479.10:ENST00000555358.5:ENST00000366206.2:ENST00000556577.1:ENST00000554991.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	49	2	2.08149	2.298185	2.51488	0.0380957	0.031124	0.143644	0.141678
chr2	161378478	161378577	901818	0	+	0.30303	(0.28,0.32]	chr2	99726	68	INTRON	INTRON	PSMD14	ENSG00000115233.12	ENST00000409682.8	protein_coding	protein_coding	protein_coding	protein_coding	3	49	2	2.08149	2.298185	2.51488	0.0380957	0.031124	0.143644	0.141678
chr1	10509757	10509857	23325	0	+	0.38	(0.378,0.408]	chr1	2503	141	INTRON	INTRON	PEX14	ENSG00000142655.13	ENST00000472851.1:ENST00000356607.9:ENST00000491661.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	30	2	2.13703	2.298175	2.45932	0.0797592	0.0346754	0.19979	0.148144
chr14	74886134	74886232	5789816	0	+	0.397959	(0.378,0.408]	chr14	548563	1	INTRON	INTRON	DLST	ENSG00000119689.15	ENST00000556460.5:ENST00000555492.5:ENST00000557012.5:ENST00000554612.5:ENST00000334220.9:ENST00000238671.11:ENST00000556582.5:ENST00000555071.5:ENST00000555190.5:ENST00000555459.5:ENST00000555089.5:ENST00000626051.1:ENST00000554806.5:ENST00000555988.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	30	2	2.13703	2.298175	2.45932	0.0797592	0.0346754	0.19979	0.148144
chr19	38971385	38971485	7181729	0	-	0.4	(0.378,0.408]	chr19	726150	188	INTRON	INTRON	FBXO17	ENSG00000269190.6	ENST00000292852.9:ENST00000596025.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	30	2	2.13703	2.298175	2.45932	0.0797592	0.0346754	0.19979	0.148144
chr4	4526498	4526598	2102172	0	-	0.38	(0.378,0.408]	chr4	208155	544	INTRON	INTRON	STX18	ENSG00000168818.10	ENST00000505286.5:ENST00000306200.7:ENST00000507908.5:ENST00000512780.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	30	2	2.13703	2.298175	2.45932	0.0797592	0.0346754	0.19979	0.148144
chr4	53410221	53410320	1959779	0	+	0.383838	(0.378,0.408]	chr4	196437	100	INTRON	INTRON	FIP1L1	ENSG00000145216.16	ENST00000337488.11:ENST00000358575.9:ENST00000507922.5:ENST00000306932.10:ENST00000505125.5:ENST00000513975.5:ENST00000514543.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	30	2	2.13703	2.298175	2.45932	0.0797592	0.0346754	0.19979	0.148144
chr4	67522976	67523075	2153288	0	-	0.383838	(0.378,0.408]	chr4	211991	31	INTRON	INTRON	CENPC	ENSG00000145241.11	ENST00000273853.11:ENST00000513216.5:ENST00000506882.5:ENST00000510189.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	30	2	2.13703	2.298175	2.45932	0.0797592	0.0346754	0.19979	0.148144
chr5	55312740	55312840	2355130	0	+	0.38	(0.378,0.408]	chr5	227123	42	INTRON	INTRON	MTREX	ENSG00000039123.16	ENST00000230640.10:ENST00000506750.5:ENST00000504388.5:ENST00000503165.5:ENST00000504997.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	30	2	2.13703	2.298175	2.45932	0.0797592	0.0346754	0.19979	0.148144
chr7	92716856	92716956	3572061	0	-	0.38	(0.378,0.408]	chr7	332798	152	INTRON	INTRON	CDK6	ENSG00000105810.10	ENST00000424848.3:ENST00000265734.8:ENST00000473078.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	30	2	2.13703	2.298175	2.45932	0.0797592	0.0346754	0.19979	0.148144
chr7	132866764	132866864	3643728	0	-	0.38	(0.378,0.408]	chr7	338836	279	INTRON	INTRON	CHCHD3	ENSG00000106554.13	ENST00000262570.10:ENST00000448878.6:ENST00000496427.5:ENST00000423635.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	30	2	2.13703	2.298175	2.45932	0.0797592	0.0346754	0.19979	0.148144
chr7	135607970	135608069	3428841	0	+	0.383838	(0.378,0.408]	chr7	319741	2	INTRON	INTRON	NUP205	ENSG00000155561.15	ENST00000285968.11:ENST00000607647.5:ENST00000472132.5:ENST00000463247.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	30	2	2.13703	2.298175	2.45932	0.0797592	0.0346754	0.19979	0.148144
chr19	28491454	28491554	7166009	0	-	0.58	(0.57,1]	chr19	724189	232	INTRON	INTRON	ENSG00000283403:ENSG00000267243	ENSG00000283403.1:ENSG00000267243.6	ENST00000592347.5:ENST00000593065.5	lncRNA	lncRNA	lncRNA	lncRNA	16	100	2	2.28472	2.298145	2.31157	7.1544e-4	1.07129e-4	0.0244077	0.00927469
chr12	118381128	118381227	5234445	0	+	0.313131	(0.28,0.32]	chr12	496607	5	INTRON	INTRON	SUDS3	ENSG00000111707.12	ENST00000543473.2	protein_coding	protein_coding	protein_coding	protein_coding	3	49	2	2.0243	2.298125	2.57195	0.0364967	0.0331711	0.153759	0.133994
chr6	12020718	12020818	2814310	0	+	0.3	(0.28,0.32]	chr6	264793	3	SS5_PROX	SS5_PROX:INTRON	HIVEP1	ENSG00000095951.17	ENST00000491710.5:ENST00000487103.5:ENST00000379388.7:ENST00000627968.2:ENST00000541134.5:ENST00000442081.6:ENST00000478545.1:ENST00000484210.1	protein_coding	protein_coding	protein_coding	protein_coding	3	49	2	2.0243	2.298125	2.57195	0.0364967	0.0331711	0.153759	0.133994
chr1	45591670	45591770	93276	0	+	0.35	(0.32,0.35]	chr1	12571	4	SS5_PROX	SS5_PROX:INTRON	NASP	ENSG00000132780.17	ENST00000437901.6:ENST00000537798.5:ENST00000437362.6:ENST00000350030.8:ENST00000464190.6:ENST00000527359.5:ENST00000528084.5:ENST00000453748.5:ENST00000525515.5:ENST00000527470.5:ENST00000529333.5:ENST00000531532.5:ENST00000530840.5:ENST00000528238.5:ENST00000534101.1:ENST00000470768.5:ENST00000372052.8:ENST00000351223.7:ENST00000629893.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	88	2	2.05211	2.298095	2.54408	0.0106769	0.00659077	0.0861859	0.0737338
chr1	110367667	110367766	182628	0	+	0.343434	(0.32,0.35]	chr1	20257	113	INTRON	INTRON	LAMTOR5-AS1	ENSG00000224699.10	ENST00000626572.2	lncRNA	lncRNA	lncRNA	lncRNA	7	102	2	2.00036	2.29809	2.59582	0.012813	0.00178944	0.0926667	0.0392749
chr11	86048982	86049082	5014642	0	-	0.56	(0.515,0.57]	chr11	473022	170	INTRON	INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000630913.2:ENST00000528398.5:ENST00000356360.9:ENST00000534412.5:ENST00000531558.1:ENST00000531930.5:ENST00000532041.5:ENST00000525162.5:ENST00000528256.1:ENST00000528411.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	10	105	2	1.9913	2.298075	2.60485	0.00635972	2.42252e-4	0.069149	0.0137115
chr3	143010959	143011059	1529167	0	+	0.34	(0.32,0.35]	chr3	159329	1	SS5_PROX	SS5_PROX:INTRON	U2SURP	ENSG00000163714.18	ENST00000600150.5:ENST00000488497.7:ENST00000493782.5:ENST00000473835.7:ENST00000461591.5:ENST00000493598.6:ENST00000463563.6:ENST00000470400.5:ENST00000465175.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	77	2	1.94202	2.297945	2.65387	0.0486128	0.00137401	0.153946	0.0340409
chr11	57785840	57785940	4793372	0	+	0.38	(0.378,0.408]	chr11	443721	38	INTRON	INTRON	ENSG00000288534:CTNND1	ENSG00000288534.1:ENSG00000198561.16	ENST00000673781.1:ENST00000673810.1:ENST00000674116.1:ENST00000674060.1:ENST00000524630.5:ENST00000529919.5:ENST00000533189.1:ENST00000682741.1:ENST00000358694.10:ENST00000361332.8:ENST00000361391.10:ENST00000361796.9:ENST00000415361.6:ENST00000426142.6:ENST00000428599.6:ENST00000525902.5:ENST00000526357.5:ENST00000526772.5:ENST00000527467.5:ENST00000528232.5:ENST00000528621.5:ENST00000529526.5:ENST00000529873.5:ENST00000529986.5:ENST00000530094.5:ENST00000530748.5:ENST00000531014.5:ENST00000532245.5:ENST00000532463.5:ENST00000532649.5:ENST00000532787.5:ENST00000532844.5:ENST00000533667.5:ENST00000534579.5:ENST00000399050.10:ENST00000526938.5:ENST00000531007.2:ENST00000674015.1:ENST00000673826.1:ENST00000673683.1:ENST00000674106.1:ENST00000530068.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	81	2	1.77782	2.29794	2.81806	0.0388177	5.36236e-4	0.143072	0.0209287
chr8	43067673	43067772	3745964	0	+	0.333333	(0.32,0.35]	chr8	348528	31	INTRON	INTRON	FNTA	ENSG00000168522.13	ENST00000533559.5:ENST00000526755.5:ENST00000302279.8:ENST00000527153.5:ENST00000533383.5:ENST00000533998.5:ENST00000524546.5:ENST00000531266.5:ENST00000533368.1:ENST00000525699.5:ENST00000529687.5:ENST00000533336.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	74	2	2.06478	2.297925	2.53107	0.0147778	0.00860484	0.106702	0.0784134
chr22	21596356	21596456	7481991	0	+	0.36	(0.35,0.378]	chr22	763238	30	INTRON	INTRON	UBE2L3	ENSG00000185651.16	ENST00000458578.6:ENST00000545681.2:ENST00000696046.1:ENST00000342192.9:ENST00000496722.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	99	2	1.87726	2.297865	2.71847	0.0297629	3.66214e-4	0.12908	0.0171615
chr15	44662890	44662990	6164775	0	-	0.39	(0.378,0.408]	chr15	587447	1	SS5_PROX	SS5_PROX:INTRON	SPG11	ENSG00000104133.16	ENST00000684235.1:ENST00000261866.12:ENST00000559511.6:ENST00000682065.1:ENST00000682669.1:ENST00000683496.1:ENST00000682460.1:ENST00000682495.1:ENST00000684038.1:ENST00000683186.1:ENST00000683734.1:ENST00000535302.6:ENST00000427534.6:ENST00000558319.5:ENST00000684676.1:ENST00000682788.1:ENST00000683121.1:ENST00000682915.1:ENST00000683255.1:ENST00000683573.1:ENST00000682877.1:ENST00000559193.5:ENST00000684490.1:ENST00000682410.1:ENST00000682648.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	62	2	1.58985	2.297765	3.00568	0.0290335	0.00811866	0.141186	0.0766625
chr16	70437848	70437948	6511453	0	-	0.58	(0.57,1]	chr16	630693	149	INTRON	INTRON	ST3GAL2	ENSG00000157350.13	ENST00000342907.3:ENST00000566097.1:ENST00000567586.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	42	2	1.9324	2.297725	2.66305	0.00747247	0.00327879	0.0772645	0.0509077
chr3	64023084	64023179	1724088	0	-	0.610526	(0.57,1]	chr3	176324	4	EXON_MRNA	EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PSMD6	ENSG00000163636.11	ENST00000394431.6:ENST00000295901.9:ENST00000492933.5:ENST00000476464.5:ENST00000482510.5:ENST00000475036.1:ENST00000497323.5:ENST00000478185.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	42	2	1.9324	2.297725	2.66305	0.00747247	0.00327879	0.0772645	0.0509077
chr12	123207661	123207761	5443803	0	-	0.5	(0.476,0.515]	chr12	520832	39	INTRON	INTRON	MPHOSPH9	ENSG00000051825.15	ENST00000606320.6:ENST00000541076.6:ENST00000545556.6:ENST00000302373.8:ENST00000539024.5:ENST00000539336.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	47	2	1.58335	2.29766	3.01197	0.0640461	0.00633162	0.177882	0.0722266
chr9	37131639	37131739	4117769	0	+	0.32	(0.28,0.32]	chr9	375372	43	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000322831.6:ENST00000461038.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	70	2	1.96841	2.297635	2.62686	0.0289217	0.0124199	0.1274	0.0973643
chr4	1940657	1940753	1911280	0	+	0.572917	(0.57,1]	chr4	191788	10	UTR3	UTR3:EXON_MRNA:INTRON	NSD2	ENSG00000109685.19	ENST00000508803.6:ENST00000514045.5:ENST00000398261.6:ENST00000382891.9:ENST00000353275.9:ENST00000382892.6:ENST00000382895.7:ENST00000312087.10:ENST00000420906.6:ENST00000503128.5:ENST00000677559.1:ENST00000512700.2:ENST00000678714.1:ENST00000511904.1:ENST00000513726.5:ENST00000678128.1:ENST00000482415.6:ENST00000514329.5:ENST00000502425.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	50	2	1.9324	2.2974449999999997	2.66249	0.00747247	9.0016e-4	0.0772645	0.0277303
chr6	4059613	4059712	2790097	0	+	0.424242	(0.408,0.44]	chr6	263558	4	INTRON	INTRON	PRPF4B	ENSG00000112739.17	ENST00000480058.5:ENST00000337659.11:ENST00000481109.5:ENST00000463634.6:ENST00000494674.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	14	172	2	2.27481	2.297225	2.31964	7.98147e-4	6.70606e-4	0.0261178	0.0235103
chr1	19623985	19624083	40671	0	+	0.469388	(0.44,0.476]	chr1	4773	3	SS5_PROX	SS5_PROX:INTRON	MICOS10	ENSG00000173436.15	ENST00000648702.1:ENST00000617872.4:ENST00000322753.7:ENST00000467029.5:ENST00000481464.5:ENST00000498642.5:ENST00000485362.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	72	2	1.88483	2.297215	2.7096	0.0149825	0.00376205	0.107704	0.0539118
chr15	63755725	63755825	6200115	0	-	0.46	(0.44,0.476]	chr15	591408	4	SS3_PROX	SS3_PROX:INTRON	HERC1	ENSG00000103657.14	ENST00000443617.7:ENST00000561400.1:ENST00000559886.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	81	2	1.34221	2.297215	3.25222	0.0656882	2.39476e-4	0.181162	0.0136403
chr1	153894775	153894875	557484	0	-	0.53	(0.515,0.57]	chr1	65989	79	INTRON	INTRON	GATAD2B	ENSG00000143614.10	ENST00000368655.5:ENST00000634544.1:ENST00000634408.1:ENST00000634401.1:ENST00000634791.1:ENST00000636014.1:ENST00000637331.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	75	2	1.5318	2.297095	3.06239	0.0258209	6.62949e-4	0.133676	0.0234815
chr1	185316552	185316652	603711	0	-	0.67	(0.57,1]	chr1	71931	2	SS5_PROX	SS5_PROX:INTRON	IVNS1ABP	ENSG00000116679.16	ENST00000367498.8:ENST00000459929.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	34	2	1.79063	2.29707	2.80351	0.0356001	0.00172505	0.15159	0.0374701
chr11	891931	892030	4890280	0	-	0.424242	(0.408,0.44]	chr11	457994	74	INTRON	INTRON	CHID1	ENSG00000177830.18	ENST00000323578.13:ENST00000449825.5:ENST00000454838.6:ENST00000429789.6:ENST00000528581.5:ENST00000436108.6:ENST00000526714.5:ENST00000524832.5:ENST00000531859.5:ENST00000534254.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	39	2	2.07919	2.2970550000000003	2.51492	0.0329839	0.0291499	0.14147	0.133816
chr16	70545619	70545717	6385367	0	+	0.418367	(0.408,0.44]	chr16	613923	7	INTRON	INTRON	SF3B3	ENSG00000189091.13	ENST00000302516.10:ENST00000572365.1:ENST00000567635.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	39	2	2.07919	2.2970550000000003	2.51492	0.0329839	0.0291499	0.14147	0.133816
chr2	47470266	47470365	774207	0	+	0.424242	(0.408,0.44]	chr2	87291	31	INTRON	INTRON	MSH2	ENSG00000095002.15	ENST00000543555.6:ENST00000644092.1:ENST00000645339.1:ENST00000646415.1:ENST00000645506.1:ENST00000406134.5:ENST00000233146.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	39	2	2.07919	2.2970550000000003	2.51492	0.0329839	0.0291499	0.14147	0.133816
chr3	49782872	49782972	1694847	0	-	0.43	(0.408,0.44]	chr3	173818	341	INTRON	INTRON	IP6K1	ENSG00000176095.12	ENST00000321599.9:ENST00000395238.5:ENST00000613416.4:ENST00000468463.5:ENST00000460540.1:ENST00000498149.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	39	2	2.07919	2.2970550000000003	2.51492	0.0329839	0.0291499	0.14147	0.133816
chr15	68818012	68818112	6214949	0	-	0.41	(0.408,0.44]	chr15	593032	4	INTRON	INTRON	ANP32A	ENSG00000140350.15	ENST00000465139.6:ENST00000409628.6:ENST00000560303.1:ENST00000495420.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	100	2	2.00842	2.297035	2.58565	0.0108512	6.66092e-4	0.0873034	0.0233804
chr2	107696339	107696439	1205511	0	-	0.43	(0.408,0.44]	chr2	128516	452	INTRON	INTRON	LINC01885	ENSG00000237880.2	ENST00000654481.1	lncRNA	lncRNA	lncRNA	lncRNA	4	47	2	1.8749	2.297005	2.71911	0.0264246	0.0189489	0.133676	0.108861
chr11	96338782	96338882	5024324	0	-	0.35	(0.32,0.35]	chr11	473809	2449	INTRON	INTRON	MAML2	ENSG00000184384.14	ENST00000524717.6	protein_coding	protein_coding	protein_coding	protein_coding	4	55	2	2.02133	2.29698	2.57263	0.0312297	0.017146	0.13151	0.111072
chr21	39312140	39312240	7465528	0	-	0.34	(0.32,0.35]	chr21	760568	132	INTRON	INTRON	BRWD1	ENSG00000185658.14	ENST00000333229.6:ENST00000342449.8:ENST00000380800.7:ENST00000341322.4:ENST00000470108.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	55	2	2.02133	2.29698	2.57263	0.0312297	0.017146	0.13151	0.111072
chr4	102820251	102820351	2213287	0	-	0.34	(0.32,0.35]	chr4	216759	74	INTRON	INTRON	UBE2D3	ENSG00000109332.20	ENST00000453744.7:ENST00000394804.6:ENST00000394803.9:ENST00000394801.8:ENST00000343106.9:ENST00000503742.5:ENST00000321805.11:ENST00000350435.11:ENST00000338145.7:ENST00000349311.12:ENST00000504211.5:ENST00000357194.10:ENST00000505207.5:ENST00000507845.5:ENST00000502404.5:ENST00000508635.5:ENST00000505307.5:ENST00000510129.5:ENST00000508476.5:ENST00000502563.5:ENST00000508238.5:ENST00000514755.5:ENST00000508974.5:ENST00000502690.5:ENST00000508818.5:ENST00000503418.5:ENST00000508249.1:ENST00000513098.5:ENST00000503282.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	55	2	2.02133	2.29698	2.57263	0.0312297	0.017146	0.13151	0.111072
chr21	38075257	38075357	7463634	0	-	0.44	(0.408,0.44]	chr21	760281	201	INTRON	INTRON	DSCR4	ENSG00000184029.9	ENST00000398948.5:ENST00000328264.7	lncRNA	lncRNA	lncRNA	lncRNA	3	39	2	2.00768	2.2969600000000003	2.58624	0.035843	0.0273686	0.152216	0.123904
chr16	84726585	84726685	6410169	0	+	0.4	(0.378,0.408]	chr16	615272	97	INTRON	INTRON	USP10	ENSG00000103194.16	ENST00000562743.5:ENST00000540269.6:ENST00000563892.5:ENST00000562092.1:ENST00000569511.5:ENST00000219473.12:ENST00000570191.5:ENST00000563048.5:ENST00000562283.5:ENST00000563386.5:ENST00000569038.5:ENST00000570053.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	67	2	1.89251	2.29696	2.70141	0.0251428	0.00411614	0.133404	0.0564981
chr3	48529745	48529844	1688635	0	-	0.474747	(0.44,0.476]	chr3	172531	37	INTRON	INTRON	PFKFB4	ENSG00000114268.12	ENST00000232375.8:ENST00000490115.5:ENST00000383734.6:ENST00000416568.5:ENST00000417753.5:ENST00000445633.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	63	2	1.94723	2.29696	2.64669	0.0227424	0.0040295	0.117618	0.0578376
chr19	8487654	8487742	7011212	0	+	0.590909	(0.57,1]	chr19	696219	5	EXON_LNCRNA	EXON_LNCRNA:SS3_PROX:INTRON	HNRNPM	ENSG00000099783.12	ENST00000348943.7:ENST00000325495.9:ENST00000600806.5:ENST00000620401.4:ENST00000596295.1:ENST00000602219.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	28	2	2.02391	2.296935	2.56996	0.0339274	0.00499145	0.134508	0.0646039
chr7	6056278	6056376	3476222	0	-	0.479592	(0.476,0.515]	chr7	325245	12	INTRON	INTRON	EIF2AK1	ENSG00000086232.13	ENST00000199389.11:ENST00000431744.5:ENST00000463213.5:ENST00000446699.1:ENST00000461493.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	56	2	2.03337	2.29685	2.56033	0.0287634	0.00851546	0.127066	0.0833995
chr20	47333657	47333757	7349281	0	-	0.38	(0.378,0.408]	chr20	749346	147	INTRON	INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000435836.5:ENST00000446894.5:ENST00000441977.1	protein_coding	protein_coding	protein_coding	protein_coding	5	57	2	1.48005	2.296825	3.1136	0.0596711	0.00443339	0.168954	0.061054
chr5	181295149	181295249	2563656	0	+	0.49	(0.476,0.515]	chr5	245344	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ENSG00000274525	ENSG00000274525.1	ENST00000622195.1	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	17	203	2	2.16135	2.296735	2.43212	9.47651e-4	1.88149e-4	0.0281755	0.011951
chr3	6528637	6528737	1356527	0	+	0.33	(0.32,0.35]	chr3	142508	155	INTRON	INTRON	ENSG00000189229	ENSG00000189229.12	ENST00000660158.1:ENST00000433639.1:ENST00000655754.1:ENST00000653839.1:ENST00000662846.1:ENST00000659876.1:ENST00000414438.2:ENST00000658468.1:ENST00000414603.1:ENST00000669512.1:ENST00000667028.1:ENST00000655541.1:ENST00000668643.1:ENST00000671568.1:ENST00000671036.1:ENST00000669798.1:ENST00000655753.1:ENST00000655856.1:ENST00000658398.1:ENST00000661518.1:ENST00000661279.1:ENST00000655495.1:ENST00000663041.1:ENST00000659827.1:ENST00000667716.1:ENST00000662508.1:ENST00000668416.1:ENST00000658133.1:ENST00000659651.1:ENST00000342990.4:ENST00000660054.1:ENST00000671370.1	lncRNA	lncRNA	lncRNA	lncRNA	9	125	2	1.77469	2.2965999999999998	2.81851	0.0115283	9.81116e-4	0.0960498	0.0285804
chr3	48694621	48694717	1689469	0	-	0.583333	(0.57,1]	chr3	172839	2	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	IP6K2	ENSG00000068745.15	ENST00000328631.10:ENST00000479914.5:ENST00000449563.5:ENST00000413654.5:ENST00000443853.5:ENST00000437427.5:ENST00000412850.5:ENST00000454335.5:ENST00000340879.8:ENST00000432678.6:ENST00000433104.2:ENST00000416707.1:ENST00000431721.6:ENST00000449610.5:ENST00000413298.5:ENST00000450045.5:ENST00000446860.5:ENST00000455545.5:ENST00000412795.5:ENST00000417896.1:ENST00000443964.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	28	2	2.17026	2.2965400000000002	2.42282	0.0220522	0.00879576	0.123836	0.0790073
chr6	4789204	4789304	2790990	0	+	0.53	(0.515,0.57]	chr6	263598	120	INTRON	INTRON	CDYL	ENSG00000153046.18	ENST00000328908.9:ENST00000491864.1:ENST00000440139.5:ENST00000483019.1:ENST00000397588.8:ENST00000472453.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	54	2	1.811	2.2965400000000002	2.78208	0.0325989	0.00209264	0.133687	0.0424943
chr16	21897995	21898092	6462248	0	-	0.329897	(0.32,0.35]	chr16	623549	10	INTRON	INTRON	SMG1P4	ENSG00000185710.9	ENST00000523028.5	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	13	185	2	1.98826	2.296535	2.60481	0.00489502	2.12492e-4	0.0609332	0.0127813
chr4	60243	60333	1905358	0	+	0.344444	(0.32,0.35]	chr4	191001	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	ZNF595	ENSG00000272602.6	ENST00000608255.2:ENST00000609518.5:ENST00000509152.3:ENST00000610261.6:ENST00000502981.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	133	2	1.99685	2.296495	2.59614	0.00667915	0.00119813	0.0738715	0.0315806
chr3	186786943	186787034	1586128	0	+	0.483516	(0.476,0.515]	chr3	164288	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	EIF4A2	ENSG00000156976.17	ENST00000426808.5:ENST00000323963.10:ENST00000440191.6:ENST00000425053.5:ENST00000429589.5:ENST00000485101.5:ENST00000475653.5:ENST00000443963.5:ENST00000468362.5:ENST00000492144.5:ENST00000465792.1:ENST00000475409.1:ENST00000497177.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	17	206	2	2.09217	2.2964149999999997	2.50066	9.83317e-4	1.97635e-4	0.0288314	0.0128965
chr7	121078045	121078145	3394537	0	+	0.46	(0.44,0.476]	chr7	317710	10	INTRON	INTRON	CPED1	ENSG00000106034.18	ENST00000310396.10:ENST00000428526.5:ENST00000450913.6:ENST00000520801.5:ENST00000423795.5:ENST00000443817.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	34	400	2	2.2166	2.2964	2.3762	2.61287e-4	2.79776e-5	0.0149167	0.00418098
chr1	161930877	161930977	237513	0	+	0.47	(0.44,0.476]	chr1	28625	181	INTRON	INTRON	ATF6	ENSG00000118217.7	ENST00000680688.1:ENST00000679853.1:ENST00000681738.1:ENST00000681801.1:ENST00000681779.1:ENST00000367942.4:ENST00000681001.1:ENST00000679886.1:ENST00000681169.1:ENST00000681492.1:ENST00000680481.1:ENST00000681557.1:ENST00000681912.1:ENST00000681541.1:ENST00000681036.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	29	2	2.29425	2.296335	2.29842	0.0552483	0.0518406	0.176696	0.165463
chr1	175955024	175955123	589170	0	-	0.474747	(0.44,0.476]	chr1	70870	74	INTRON	INTRON	COP1	ENSG00000143207.21	ENST00000367669.8:ENST00000367667.5:ENST00000461830.6:ENST00000367666.5:ENST00000649803.1:ENST00000308769.12	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	29	2	2.29425	2.296335	2.29842	0.0552483	0.0518406	0.176696	0.165463
chr12	111478173	111478272	5411995	0	-	0.474747	(0.44,0.476]	chr12	516831	64	INTRON	INTRON	ATXN2	ENSG00000204842.18	ENST00000642389.2:ENST00000608853.5:ENST00000672613.1:ENST00000673436.1:ENST00000643669.2:ENST00000389154.7:ENST00000616825.4:ENST00000389153.10:ENST00000550104.5:ENST00000483311.6:ENST00000672335.1:ENST00000492467.6:ENST00000673557.1:ENST00000673283.1:ENST00000673273.1:ENST00000673449.1:ENST00000535949.5:ENST00000542287.6:ENST00000643474.1:ENST00000643694.1:ENST00000645162.1:ENST00000551755.6:ENST00000644883.1:ENST00000647305.1:ENST00000495342.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	29	2	2.29425	2.296335	2.29842	0.0552483	0.0518406	0.176696	0.165463
chr13	52177154	52177251	5597322	0	-	0.463918	(0.44,0.476]	chr13	535103	10	INTRON	INTRON	ENSG00000217576:MRPS31P5	ENSG00000217576.7:ENSG00000243406.6	ENST00000451298.1:ENST00000416599.5:ENST00000606974.5:ENST00000423686.1	lncRNA	lncRNA	lncRNA:transcribed_unprocessed_pseudogene	lncRNA:processed_transcript:transcribed_unprocessed_pseudogene	2	29	2	2.29425	2.296335	2.29842	0.0552483	0.0518406	0.176696	0.165463
chr19	47621297	47621397	7085884	0	+	0.45	(0.44,0.476]	chr19	709045	133	INTRON	INTRON	ENSG00000268746	ENSG00000268746.1	ENST00000599924.1	lncRNA	lncRNA	lncRNA	lncRNA	2	29	2	2.29425	2.296335	2.29842	0.0552483	0.0518406	0.176696	0.165463
chr2	182991368	182991467	1285550	0	-	0.454545	(0.44,0.476]	chr2	135394	18	INTRON	INTRON	NCKAP1	ENSG00000061676.15	ENST00000361354.9:ENST00000360982.2	protein_coding	protein_coding	protein_coding	protein_coding	2	29	2	2.29425	2.296335	2.29842	0.0552483	0.0518406	0.176696	0.165463
chr7	133058354	133058454	3645652	0	-	0.46	(0.44,0.476]	chr7	338880	64	INTRON	INTRON	CHCHD3	ENSG00000106554.13	ENST00000262570.10:ENST00000448878.6:ENST00000423635.5:ENST00000481152.2:ENST00000457942.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	29	2	2.29425	2.296335	2.29842	0.0552483	0.0518406	0.176696	0.165463
chr7	135579808	135579906	3428543	0	+	0.469388	(0.44,0.476]	chr7	319657	5	INTRON	INTRON	NUP205	ENSG00000155561.15	ENST00000285968.11	protein_coding	protein_coding	protein_coding	protein_coding	2	29	2	2.29425	2.296335	2.29842	0.0552483	0.0518406	0.176696	0.165463
chr7	157339442	157339537	3455324	0	+	0.473684	(0.44,0.476]	chr7	323048	13	INTRON	INTRON	DNAJB6	ENSG00000105993.15	ENST00000441561.5:ENST00000429029.6:ENST00000262177.9:ENST00000486083.6:ENST00000417758.5:ENST00000459889.5:ENST00000443280.5:ENST00000488001.5:ENST00000441291.5:ENST00000437030.5:ENST00000412557.5:ENST00000453383.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	29	2	2.29425	2.296335	2.29842	0.0552483	0.0518406	0.176696	0.165463
chr8	95038940	95039037	3802195	0	+	0.453608	(0.44,0.476]	chr8	352571	21	INTRON	INTRON	NDUFAF6	ENSG00000156170.13	ENST00000523378.5:ENST00000396113.5:ENST00000519136.5:ENST00000396111.6:ENST00000396124.9:ENST00000518258.5:ENST00000523337.5:ENST00000517976.5:ENST00000520632.5:ENST00000520757.1:ENST00000454358.6:ENST00000518608.5:ENST00000519804.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	29	2	2.29425	2.296335	2.29842	0.0552483	0.0518406	0.176696	0.165463
chrX	16739720	16739820	7626014	0	+	0.45	(0.44,0.476]	chrX	780887	31	INTRON	INTRON	SYAP1	ENSG00000169895.6	ENST00000380155.4	protein_coding	protein_coding	protein_coding	protein_coding	2	29	2	2.29425	2.296335	2.29842	0.0552483	0.0518406	0.176696	0.165463
chr7	77603486	77603585	3342689	0	+	0.464646	(0.44,0.476]	chr7	311363	23	INTRON	INTRON	PTPN12	ENSG00000127947.16	ENST00000248594.11:ENST00000415482.6:ENST00000435495.6:ENST00000522115.6:ENST00000447995.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	64	2	1.61163	2.296315	2.981	0.0598319	9.31193e-4	0.169278	0.0278746
chr2	39399002	39399102	1103918	0	-	0.33	(0.32,0.35]	chr2	118511	193	INTRON	INTRON	MAP4K3	ENSG00000011566.15	ENST00000263881.8:ENST00000341681.9:ENST00000429397.5:ENST00000437968.1:ENST00000484274.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	102	2	1.80306	2.296295	2.78953	0.0246393	7.22336e-4	0.12011	0.0245475
chr5	179623613	179623709	2779784	0	-	0.614583	(0.57,1]	chr5	262337	6	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HNRNPH1	ENSG00000169045.17	ENST00000329433.11:ENST00000393432.9:ENST00000356731.9:ENST00000442819.6:ENST00000514332.5:ENST00000514731.5:ENST00000503105.5:ENST00000504779.6:ENST00000508103.5:ENST00000506721.5:ENST00000523137.5:ENST00000505811.5:ENST00000510431.5:ENST00000519056.5:ENST00000504348.5:ENST00000513225.5:ENST00000513972.5:ENST00000519707.5:ENST00000519455.5:ENST00000515158.5:ENST00000521116.5:ENST00000505087.1:ENST00000515714.5:ENST00000512273.5:ENST00000503664.1:ENST00000515446.1:ENST00000513230.1:ENST00000522256.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	20	121	2	2.20329	2.29626	2.38923	1.62443e-4	8.88249e-5	0.0109774	0.00843113
chr3	195675073	195675171	1593606	0	+	0.367347	(0.35,0.378]	chr3	165056	7	INTRON	INTRON	MUC20-OT1	ENSG00000242086.8	ENST00000429897.5:ENST00000445430.5:ENST00000446521.1	lncRNA	lncRNA	lncRNA	lncRNA	4	51	2	1.92704	2.296255	2.66547	0.0233639	0.0228255	0.125469	0.118323
chr3	113810011	113810108	1484226	0	+	0.340206	(0.32,0.35]	chr3	155006	7	UTR3	UTR3:EXON_MRNA	ATP6V1A	ENSG00000114573.10	ENST00000273398.8	protein_coding	protein_coding	protein_coding	protein_coding	23	324	2	2.06362	2.29624	2.52886	0.00161725	4.80471e-5	0.0367292	0.00566695
chr11	66653770	66653870	4811188	0	+	0.36	(0.35,0.378]	chr11	447918	15	INTRON	INTRON	RBM4	ENSG00000173933.21	ENST00000396053.9	protein_coding	protein_coding	protein_coding	protein_coding	6	79	2	1.71411	2.29623	2.87835	0.0310697	0.00160563	0.13151	0.0367961
chr2	71407826	71407924	807805	0	+	0.316327	(0.28,0.32]	chr2	90280	7	EXON_LNCRNA	EXON_LNCRNA:SS3_PROX:INTRON	ZNF638	ENSG00000075292.19	ENST00000409544.5:ENST00000264447.9:ENST00000487638.5:ENST00000494241.5:ENST00000409407.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	11	138	2	1.72011	2.29622	2.87233	0.00787291	0.0028269	0.0793693	0.0472361
chr8	31044472	31044572	3728038	0	+	0.5	(0.476,0.515]	chr8	346522	101	INTRON	INTRON	WRN	ENSG00000165392.11	ENST00000650667.1:ENST00000298139.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	86	2	2.28112	2.296125	2.31113	0.00700958	0.00258657	0.0718189	0.0469354
chr6	4824798	4824898	2791346	0	+	0.36	(0.35,0.378]	chr6	263598	476	INTRON	INTRON	CDYL	ENSG00000153046.18	ENST00000328908.9:ENST00000491864.1:ENST00000440139.5:ENST00000483019.1:ENST00000397588.8:ENST00000472453.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	121	2	2.201	2.296055	2.39111	0.00260035	0.00256708	0.0466761	0.0454405
chr1	52474138	52474234	457761	0	-	0.458333	(0.44,0.476]	chr1	55018	17	INTRON	INTRON	TUT4	ENSG00000134744.14	ENST00000371544.7:ENST00000257177.9:ENST00000528642.5:ENST00000484723.6:ENST00000371541.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	39	2	1.85146	2.296045	2.74063	0.0545846	0.0176095	0.182529	0.105143
chrX	139875356	139875456	7905328	0	-	0.46	(0.44,0.476]	chrX	804457	432	INTRON	INTRON	ATP11C	ENSG00000101974.15	ENST00000370557.5:ENST00000682941.1:ENST00000485626.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	39	2	1.85146	2.296045	2.74063	0.0545846	0.0176095	0.182529	0.105143
chr13	83026624	83026724	5633513	0	-	0.32	(0.28,0.32]	chr13	536804	2477	INTRON	INTRON	ENSG00000286385	ENSG00000286385.1	ENST00000663739.1	lncRNA	lncRNA	lncRNA	lncRNA	3	49	2	2.13651	2.29598	2.45545	0.0438092	0.0265696	0.14901	0.134088
chr10	109877390	109877490	4696636	0	-	0.47	(0.44,0.476]	chr10	433046	19	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	XPNPEP1	ENSG00000108039.18	ENST00000322238.12:ENST00000369683.5:ENST00000502935.6:ENST00000488118.6:ENST00000494564.5:ENST00000510988.5:ENST00000472336.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	64	2	2.14666	2.2958999999999996	2.44514	0.0116436	0.0087381	0.0889659	0.0845538
chr17	67364070	67364167	6826122	0	-	0.28866000000000003	(0.28,0.32]	chr17	674633	8	INTRON	INTRON	PSMD12	ENSG00000197170.10	ENST00000356126.8:ENST00000357146.4:ENST00000584008.5:ENST00000584289.5:ENST00000581618.1:ENST00000579365.5:ENST00000578015.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	49	2	1.96475	2.295805	2.62686	0.0428385	0.0289217	0.162255	0.1274
chr6	122432419	122432519	2947660	0	+	0.31	(0.28,0.32]	chr6	277511	3	UTR3	UTR3:EXON_MRNA	HSF2	ENSG00000025156.13	ENST00000452194.5:ENST00000368455.9	protein_coding	protein_coding	protein_coding	protein_coding	3	49	2	1.96475	2.295805	2.62686	0.0428385	0.0289217	0.162255	0.1274
chr1	246552894	246552993	680851	0	-	0.494949	(0.476,0.515]	chr1	79810	12	INTRON	INTRON	TFB2M	ENSG00000162851.8	ENST00000366514.5	protein_coding	protein_coding	protein_coding	protein_coding	5	56	2	1.71266	2.295725	2.87879	0.0293304	0.00999149	0.128055	0.0879541
chr6	37832809	37832909	2857163	0	+	0.41	(0.408,0.44]	chr6	270225	124	INTRON	INTRON	ZFAND3	ENSG00000156639.12	ENST00000287218.9:ENST00000373391.6:ENST00000474522.5	protein_coding	protein_coding	protein_coding	protein_coding	8	88	2	1.86926	2.29567	2.72208	0.00709955	0.00364449	0.0755905	0.0535094
chr10	35388524	35388624	4425023	0	+	0.38	(0.378,0.408]	chr10	407899	510	INTRON	INTRON	CCNY	ENSG00000108100.18	ENST00000374706.5:ENST00000490012.6:ENST00000493157.6:ENST00000374704.8:ENST00000265375.13:ENST00000339497.7:ENST00000492478.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	66	2	2.16303	2.29565	2.42827	0.0252473	0.00336942	0.12011	0.0532965
chr3	5131878	5131978	1353671	0	+	0.47	(0.44,0.476]	chr3	142361	29	INTRON	INTRON	ARL8B	ENSG00000134108.14	ENST00000429403.5:ENST00000256496.8:ENST00000455168.5:ENST00000444332.1:ENST00000419534.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	48	2	2.12992	2.295635	2.46135	0.0374637	0.010975	0.140008	0.092635
chr7	16266611	16266711	3286453	0	+	0.47	(0.44,0.476]	chr7	305229	3	SS5_PROX	SS5_PROX:INTRON	CRPPA-AS1	ENSG00000229688.8	ENST00000663812.1:ENST00000438573.5:ENST00000655000.1:ENST00000457112.1	lncRNA	lncRNA	lncRNA	lncRNA	8	101	2	2.24345	2.2956000000000003	2.34775	0.00466011	0.00250928	0.0629753	0.0446195
chrX	102772618	102772718	7695937	0	+	0.29	(0.28,0.32]	chrX	787606	18	INTRON	INTRON	LINC00630	ENSG00000223546.8	ENST00000661018.1:ENST00000431616.5:ENST00000664568.1:ENST00000668536.1:ENST00000440496.5:ENST00000420471.5:ENST00000663114.1:ENST00000658813.1:ENST00000435966.1:ENST00000656628.1	lncRNA	lncRNA	lncRNA	lncRNA	7	104	2	1.59898	2.29552	2.99206	0.030453	0.0017801	0.143385	0.0379201
chr19	35163360	35163458	7054423	0	+	0.428571	(0.408,0.44]	chr19	703823	22	INTRON	INTRON	FXYD5	ENSG00000089327.15	ENST00000543307.5:ENST00000392219.7:ENST00000592290.5:ENST00000590686.5:ENST00000541435.6:ENST00000496493.5:ENST00000342879.7:ENST00000588699.5:ENST00000423817.7:ENST00000591716.6:ENST00000586925.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	53	2	1.94273	2.29551	2.64829	0.0456237	0.00400062	0.149888	0.057767
chr14	21422846	21422945	5835958	0	-	0.555556	(0.515,0.57]	chr14	554737	64	INTRON	INTRON	CHD8	ENSG00000100888.15	ENST00000430710.8:ENST00000646647.2:ENST00000645929.1:ENST00000645206.1:ENST00000557364.6:ENST00000643469.1:ENST00000646340.1:ENST00000555962.6:ENST00000645140.1:ENST00000642518.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	25	2	2.12971	2.295375	2.46104	0.0757903	0.032841	0.194427	0.145164
chr14	104789429	104789528	5972796	0	-	0.535354	(0.515,0.57]	chr14	567791	32	INTRON	INTRON	AKT1	ENSG00000142208.18	ENST00000349310.7:ENST00000407796.7:ENST00000649815.2:ENST00000554581.5:ENST00000402615.6:ENST00000683722.1:ENST00000555528.5:ENST00000554826.2:ENST00000553797.2:ENST00000610370.2:ENST00000554848.5:ENST00000682269.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	25	2	2.12971	2.295375	2.46104	0.0757903	0.032841	0.194427	0.145164
chr15	58707206	58707306	6193089	0	-	0.54	(0.515,0.57]	chr15	589978	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ADAM10	ENSG00000137845.15	ENST00000260408.8:ENST00000402627.5:ENST00000561288.1:ENST00000559053.1:ENST00000558733.5:ENST00000439637.5:ENST00000497846.5:ENST00000558004.1:ENST00000560608.5:ENST00000561149.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	25	2	2.12971	2.295375	2.46104	0.0757903	0.032841	0.194427	0.145164
chr17	17269115	17269210	6736316	0	-	0.515789	(0.515,0.57]	chr17	660991	7	INTRON	INTRON	COPS3	ENSG00000141030.13	ENST00000268717.10:ENST00000539941.6:ENST00000578317.5:ENST00000439936.6:ENST00000486810.5:ENST00000577210.5:ENST00000417352.5:ENST00000584216.5:ENST00000583160.5:ENST00000492672.5:ENST00000477299.5:ENST00000577246.5:ENST00000495640.1:ENST00000462236.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	25	2	2.12971	2.295375	2.46104	0.0757903	0.032841	0.194427	0.145164
chr2	38303908	38304008	1098595	0	-	0.52	(0.515,0.57]	chr2	117813	32	INTRON	INTRON	ATL2	ENSG00000119787.14	ENST00000378954.9:ENST00000406122.5:ENST00000405384.6:ENST00000402054.5:ENST00000419554.6:ENST00000651368.1:ENST00000452935.6:ENST00000629272.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	25	2	2.12971	2.295375	2.46104	0.0757903	0.032841	0.194427	0.145164
chr7	105325765	105325865	3603274	0	-	0.53	(0.515,0.57]	chr7	336161	188	INTRON	INTRON	SRPK2	ENSG00000135250.17	ENST00000393651.8:ENST00000482897.5:ENST00000460391.5:ENST00000462282.5:ENST00000465112.5:ENST00000482862.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	25	2	2.12971	2.295375	2.46104	0.0757903	0.032841	0.194427	0.145164
chr8	25453133	25453232	3926298	0	-	0.525253	(0.515,0.57]	chr8	359463	12	INTRON	INTRON	KCTD9	ENSG00000104756.16	ENST00000221200.9:ENST00000519665.5:ENST00000523140.5:ENST00000522493.5:ENST00000518067.5:ENST00000518997.5:ENST00000523294.5:ENST00000521458.5:ENST00000524217.1:ENST00000517914.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	25	2	2.12971	2.295375	2.46104	0.0757903	0.032841	0.194427	0.145164
chr9	128794565	128794664	4207265	0	+	0.525253	(0.515,0.57]	chr9	385158	16	INTRON	INTRON	TBC1D13	ENSG00000107021.16	ENST00000372648.10:ENST00000475097.5:ENST00000466056.1:ENST00000223865.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	25	2	2.12971	2.295375	2.46104	0.0757903	0.032841	0.194427	0.145164
chr1	160219553	160219651	571163	0	-	0.520408	(0.515,0.57]	chr1	69110	7	EXON_MRNA	EXON_MRNA:INTRON	DCAF8	ENSG00000132716.19	ENST00000326837.6:ENST00000368073.7:ENST00000368074.6:ENST00000477163.1:ENST00000461888.5:ENST00000490368.5:ENST00000497354.1:ENST00000481831.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	56	2	1.44339	2.295345	3.1473	0.0352285	0.00397184	0.150284	0.0549214
chr7	75731459	75731559	3561176	0	-	0.39	(0.378,0.408]	chr7	331784	764	INTRON	INTRON	HIP1	ENSG00000127946.17	ENST00000336926.11:ENST00000434438.6:ENST00000485723.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	83	2	1.88928	2.295345	2.70141	0.00958693	0.00411614	0.0866052	0.0564981
chr10	113909730	113909829	4527406	0	+	0.30303	(0.28,0.32]	chr10	417479	13	UTR3	UTR3:EXON_MRNA	NHLRC2	ENSG00000196865.4	ENST00000369301.3	protein_coding	protein_coding	protein_coding	protein_coding	3	50	2	1.91611	2.29532	2.67453	0.0539102	0.021289	0.164153	0.123318
chr19	47152634	47152715	7084094	0	+	0.333333	(0.32,0.35]	chr19	708768	2	SS3_PROX	SS3_PROX:INTRON	SAE1	ENSG00000142230.13	ENST00000594144.5:ENST00000594526.5:ENST00000597808.5:ENST00000413379.7:ENST00000600706.5:ENST00000270225.12:ENST00000598840.5:ENST00000414294.6:ENST00000600753.1:ENST00000660039.1:ENST00000664120.1:ENST00000596995.1:ENST00000392776.3:ENST00000659110.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	45	2	2.07985	2.29523	2.51061	0.0364463	0.0303092	0.143025	0.138959
chr3	42218495	42218594	1405733	0	+	0.323232	(0.32,0.35]	chr3	147607	60	INTRON	INTRON	TRAK1	ENSG00000182606.17	ENST00000487159.5:ENST00000672026.1:ENST00000673621.2:ENST00000327628.10:ENST00000396175.5	protein_coding	protein_coding	protein_coding	protein_coding	3	45	2	2.07985	2.29523	2.51061	0.0364463	0.0303092	0.143025	0.138959
chr12	62558836	62558934	5152110	0	+	0.520408	(0.515,0.57]	chr12	487597	23	INTRON	INTRON	MON2	ENSG00000061987.16	ENST00000641654.1:ENST00000546600.5:ENST00000393630.8:ENST00000547095.5:ENST00000552738.5:ENST00000393629.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	54	2	1.9021	2.295215	2.68833	0.0184931	0.00848696	0.108861	0.083161
chr11	47373332	47373432	4949348	0	-	0.54	(0.515,0.57]	chr11	464068	129	INTRON	INTRON	SPI1	ENSG00000066336.12	ENST00000378538.8:ENST00000227163.8:ENST00000533030.1:ENST00000533968.1	protein_coding	protein_coding	protein_coding	protein_coding	2	25	2	2.23915	2.2952	2.35125	0.0596178	0.0436431	0.16883600000000001	0.162255
chr11	66633203	66633302	4810969	0	+	0.444444	(0.44,0.476]	chr11	447879	34	INTRON	INTRON	RBM14-RBM4	ENSG00000248643.5	ENST00000412278.2:ENST00000511114.1:ENST00000421355.1:ENST00000500635.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	87	2	1.77578	2.2952	2.81462	0.0105236	0.00247064	0.0908969	0.0446195
chr12	24888191	24888291	5297298	0	-	0.52	(0.515,0.57]	chr12	503865	64	INTRON	INTRON	BCAT1	ENSG00000060982.15	ENST00000261192.12:ENST00000538118.5:ENST00000342945.9:ENST00000539282.5:ENST00000539780.5:ENST00000544418.1:ENST00000546285.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	25	2	2.23915	2.2952	2.35125	0.0596178	0.0436431	0.16883600000000001	0.162255
chr12	110397250	110397350	5409134	0	-	0.55	(0.515,0.57]	chr12	516463	4	INTRON	INTRON	ANAPC7:ENSG00000258210	ENSG00000196510.14:ENSG00000258210.1	ENST00000455511.9:ENST00000450008.3:ENST00000552170.2:ENST00000550231.1:ENST00000464697.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay	2	25	2	2.23915	2.2952	2.35125	0.0596178	0.0436431	0.16883600000000001	0.162255
chr21	33467322	33467422	7440853	0	-	0.52	(0.515,0.57]	chr21	759362	2	SS3_PROX	SS3_PROX:INTRON	TMEM50B	ENSG00000142188.17	ENST00000420455.5:ENST00000542230.7:ENST00000441128.5:ENST00000442441.5:ENST00000432504.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	25	2	2.23915	2.2952	2.35125	0.0596178	0.0436431	0.16883600000000001	0.162255
chr8	140567922	140568021	4075885	0	-	0.525253	(0.515,0.57]	chr8	370265	49	INTRON	INTRON	AGO2	ENSG00000123908.12	ENST00000220592.10:ENST00000519980.5:ENST00000523609.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	25	2	2.23915	2.2952	2.35125	0.0596178	0.0436431	0.16883600000000001	0.162255
chr5	180503384	180503484	2561953	0	+	0.54	(0.515,0.57]	chr5	245082	74	INTRON	INTRON	CNOT6	ENSG00000113300.13	ENST00000261951.9:ENST00000393356.7:ENST00000507016.1:ENST00000618123.4:ENST00000502447.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	45	2	2.01737	2.295175	2.57298	0.0352218	0.00506495	0.137535	0.0646039
chr1	89529778	89529878	157449	0	+	0.34	(0.32,0.35]	chr1	17165	24	INTRON	INTRON	LRRC8B	ENSG00000197147.15	ENST00000330947.7:ENST00000439853.6:ENST00000449440.5:ENST00000640258.1:ENST00000639264.1	protein_coding	protein_coding	protein_coding	protein_coding	3	45	2	2.01768	2.2951550000000003	2.57263	0.0361337	0.0312297	0.152563	0.13151
chr3	100268948	100269048	1465647	0	+	0.35	(0.32,0.35]	chr3	153594	13	INTRON	INTRON	TBC1D23	ENSG00000036054.13	ENST00000394144.9:ENST00000485687.5:ENST00000344949.9:ENST00000486274.5:ENST00000471098.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	45	2	2.01768	2.2951550000000003	2.57263	0.0361337	0.0312297	0.152563	0.13151
chr19	10659254	10659353	7013261	0	+	0.424242	(0.408,0.44]	chr19	696757	33	INTRON	INTRON	ILF3	ENSG00000129351.17	ENST00000449870.5:ENST00000587928.5:ENST00000407004.7:ENST00000589998.5:ENST00000589600.5:ENST00000589283.5:ENST00000590009.5:ENST00000593199.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	53	2	2.27464	2.295145	2.31565	0.0158016	0.0154718	0.109464	0.100909
chr16	68322289	68322382	6372376	0	+	0.516129	(0.515,0.57]	chr16	612414	9	UTR3	UTR3:EXON_MRNA:INTRON	PRMT7	ENSG00000132600.18	ENST00000686904.1:ENST00000562381.7:ENST00000689486.1:ENST00000693200.1:ENST00000685141.1:ENST00000562050.6:ENST00000565745.6:ENST00000685109.1:ENST00000689637.1:ENST00000692867.1:ENST00000693670.1:ENST00000692760.1:ENST00000687654.1:ENST00000441236.3:ENST00000675132.1:ENST00000688470.1:ENST00000691833.1:ENST00000690432.1:ENST00000691804.1:ENST00000691961.1:ENST00000690932.1:ENST00000692632.1:ENST00000687444.1:ENST00000692283.1:ENST00000569571.5:ENST00000692621.1:ENST00000566341.5:ENST00000686053.1:ENST00000692966.1:ENST00000691663.1:ENST00000564050.6:ENST00000449359.7:ENST00000569047.7:ENST00000693309.1:ENST00000690311.1:ENST00000565356.5:ENST00000564441.6:ENST00000563520.5:ENST00000687558.1:ENST00000339507.9:ENST00000688969.1:ENST00000568975.5:ENST00000563562.5:ENST00000561806.5:ENST00000562456.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	57	2	2.1885	2.29514	2.40178	0.0202537	0.00382306	0.121364	0.0542786
chr1	12616716	12616795	379532	0	-	0.64557	(0.57,1]	chr1	44550	3	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	DHRS3	ENSG00000162496.9	ENST00000616661.5:ENST00000464917.5	protein_coding	protein_coding	protein_coding	protein_coding	7	46	2	2.24434	2.2951249999999996	2.34591	0.00677343	0.00182871	0.074225	0.0386771
chr2	65100355	65100455	1142664	0	-	0.38	(0.378,0.408]	chr2	122180	19	INTRON	INTRON	RAB1A	ENSG00000138069.18	ENST00000649427.1:ENST00000494188.1:ENST00000409784.8:ENST00000409892.5:ENST00000409751.1:ENST00000398529.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	66	2	1.98727	2.295115	2.60296	0.0267851	0.00639052	0.123349	0.0726555
chr1	28764238	28764337	58621	0	+	0.393939	(0.378,0.408]	chr1	7605	199	INTRON	INTRON	YTHDF2	ENSG00000198492.16	ENST00000542507.5:ENST00000373812.8:ENST00000541996.5:ENST00000478283.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	30	2	2.2259	2.29509	2.36428	0.0662381	0.0441088	0.181924	0.162255
chr11	46745077	46745176	4947697	0	-	0.383838	(0.378,0.408]	chr11	463626	1	INTRON	INTRON	CKAP5	ENSG00000175216.15	ENST00000529230.6:ENST00000312055.9:ENST00000354558.7:ENST00000533413.5:ENST00000525896.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	30	2	2.2259	2.29509	2.36428	0.0662381	0.0441088	0.181924	0.162255
chr12	104656775	104656875	5212686	0	+	0.39	(0.378,0.408]	chr12	493329	544	INTRON	INTRON	CHST11	ENSG00000171310.11	ENST00000303694.6:ENST00000549260.5:ENST00000549016.1	protein_coding	protein_coding	protein_coding	protein_coding	2	30	2	2.2259	2.29509	2.36428	0.0662381	0.0441088	0.181924	0.162255
chr14	77578687	77578765	5927765	0	-	0.384615	(0.378,0.408]	chr14	563722	4	SS5_PROX	SS5_PROX:INTRON	SPTLC2	ENSG00000100596.8	ENST00000216484.7:ENST00000692906.1:ENST00000554901.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	30	2	2.2259	2.29509	2.36428	0.0662381	0.0441088	0.181924	0.162255
chr15	64547646	64547746	6044960	0	+	0.4	(0.378,0.408]	chr15	575696	447	INTRON	INTRON	ZNF609	ENSG00000180357.10	ENST00000326648.5:ENST00000558680.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	30	2	2.2259	2.29509	2.36428	0.0662381	0.0441088	0.181924	0.162255
chr22	17982307	17982407	7550248	0	-	0.4	(0.378,0.408]	chr22	771756	751	INTRON	INTRON	MICAL3	ENSG00000243156.9	ENST00000441493.7:ENST00000672019.1:ENST00000495076.5:ENST00000424046.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	30	2	2.2259	2.29509	2.36428	0.0662381	0.0441088	0.181924	0.162255
chr4	69296	69396	1905451	0	+	0.39	(0.378,0.408]	chr4	191008	9	INTRON	INTRON	ZNF595	ENSG00000272602.6	ENST00000608255.2:ENST00000609518.5:ENST00000610261.6	protein_coding	protein_coding	protein_coding	protein_coding	2	30	2	2.2259	2.29509	2.36428	0.0662381	0.0441088	0.181924	0.162255
chr6	99417926	99418026	3166074	0	-	0.4	(0.378,0.408]	chr6	295334	11	INTRON	INTRON	PNISR	ENSG00000132424.17	ENST00000681615.1:ENST00000369239.10:ENST00000647811.1:ENST00000481229.2:ENST00000679525.1:ENST00000681611.1:ENST00000438806.5:ENST00000478777.5:ENST00000492294.5:ENST00000498075.1:ENST00000466057.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	30	2	2.2259	2.29509	2.36428	0.0662381	0.0441088	0.181924	0.162255
chr7	10640942	10641042	3483189	0	-	0.39	(0.378,0.408]	chr7	325772	790	INTRON	INTRON	MGC4859	ENSG00000283117.1	ENST00000634803.1	lncRNA	lncRNA	lncRNA	lncRNA	2	30	2	2.2259	2.29509	2.36428	0.0662381	0.0441088	0.181924	0.162255
chr8	9617975	9618074	3700123	0	+	0.40404	(0.378,0.408]	chr8	343193	19	INTRON	INTRON	TNKS	ENSG00000173273.16	ENST00000310430.11:ENST00000520408.5:ENST00000518281.5:ENST00000518027.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	50	2	1.73164	2.29509	2.85854	0.0441773	0.0107837	0.149888	0.0920575
chr5	21489627	21489726	2326030	0	+	0.494949	(0.476,0.515]	chr5	225028	151	INTRON	INTRON	GUSBP1	ENSG00000183666.18	ENST00000508260.5:ENST00000449061.3:ENST00000685731.1:ENST00000688956.1:ENST00000692922.1:ENST00000686144.1:ENST00000607545.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	13	156	2	2.18396	2.29508	2.4062	0.00209955	3.24143e-4	0.0413691	0.0159797
chr12	91434256	91434356	5383558	0	-	0.33	(0.32,0.35]	chr12	513479	345	INTRON	INTRON	ENSG00000289605	ENSG00000289605.1	ENST00000685093.1	lncRNA	lncRNA	lncRNA	lncRNA	6	85	2	1.80306	2.29506	2.78706	0.0246393	0.00253645	0.12011	0.0465056
chr3	42014716	42014816	1403669	0	+	0.45	(0.44,0.476]	chr3	147497	2	INTRON	INTRON	TRAK1	ENSG00000182606.17	ENST00000487159.5:ENST00000672026.1:ENST00000673621.2	protein_coding	protein_coding	protein_coding	protein_coding	3	39	2	1.77101	2.294985	2.81896	0.0693975	0.0120766	0.184298	0.0962311
chr4	1942993	1943092	1911305	0	+	0.444444	(0.44,0.476]	chr4	191792	7	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	NSD2	ENSG00000109685.19	ENST00000508803.6:ENST00000398261.6:ENST00000382891.9:ENST00000353275.9:ENST00000382892.6:ENST00000382895.7:ENST00000312087.10:ENST00000503128.5:ENST00000677559.1:ENST00000678714.1:ENST00000511904.1:ENST00000513726.5:ENST00000678128.1:ENST00000482415.6:ENST00000514329.5:ENST00000502425.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	39	2	1.77101	2.294985	2.81896	0.0693975	0.0120766	0.184298	0.0962311
chr7	65376385	65376484	3322475	0	+	0.313131	(0.28,0.32]	chr7	308923	20	INTRON	INTRON	ZNF92	ENSG00000146757.14	ENST00000357512.3:ENST00000488849.1:ENST00000431504.1:ENST00000328747.12:ENST00000450302.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	51	2	2.05458	2.2949	2.53522	0.0381508	0.0310424	0.143457	0.141764
chr1	202792991	202793091	620596	0	-	0.35	(0.32,0.35]	chr1	73670	155	INTRON	INTRON	KDM5B	ENSG00000117139.18	ENST00000367265.9:ENST00000648338.1:ENST00000649542.1:ENST00000647757.1:ENST00000367264.7:ENST00000648473.1:ENST00000650569.1:ENST00000648056.1:ENST00000649770.1:ENST00000648469.1:ENST00000650417.1:ENST00000235790.9:ENST00000648738.1:ENST00000648958.1:ENST00000602511.1:ENST00000650368.1:ENST00000649200.1:ENST00000648354.1:ENST00000650493.1:ENST00000470573.5:ENST00000467487.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	94	2	2.02448	2.2948399999999998	2.5652	0.00765724	0.00595393	0.075364	0.0698475
chr5	32151671	32151771	2597289	0	-	0.24	[0,0.28]	chr5	246744	74	INTRON	INTRON	GOLPH3	ENSG00000113384.14	ENST00000265070.7:ENST00000503610.5:ENST00000512668.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	79	2	1.90035	2.294765	2.68918	0.0275571	0.0173564	0.123904	0.112318
chr4	82882539	82882638	2180023	0	-	0.363636	(0.35,0.378]	chr4	214408	2	INTRON	INTRON	SEC31A	ENSG00000138674.17	ENST00000395310.7:ENST00000513858.5:ENST00000348405.8:ENST00000448323.5:ENST00000311785.11:ENST00000509142.5:ENST00000443462.6:ENST00000355196.6:ENST00000508502.5:ENST00000505984.5:ENST00000508479.5:ENST00000436790.6:ENST00000503058.5:ENST00000507816.5:ENST00000514326.5:ENST00000513323.5:ENST00000511975.5:ENST00000507340.5:ENST00000507867.5:ENST00000506497.5:ENST00000510310.1:ENST00000503210.5:ENST00000505434.5:ENST00000507676.5:ENST00000506495.5:ENST00000507051.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	65	2	1.59904	2.29474	2.99044	0.0285976	0.00894806	0.139244	0.0799922
chr10	1007397	1007474	4379191	0	+	0.350649	(0.35,0.378]	chr10	403858	2	SS5_PROX	SS5_PROX:INTRON	GTPBP4	ENSG00000107937.19	ENST00000360803.9:ENST00000491635.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	52	2	1.6599	2.2947100000000002	2.92952	0.0545616	0.00881187	0.165292	0.084878
chr6	87699113	87699212	3152890	0	-	0.30303	(0.28,0.32]	chr6	294114	170	INTRON	INTRON	AKIRIN2	ENSG00000135334.9	ENST00000257787.6	protein_coding	protein_coding	protein_coding	protein_coding	12	194	2	1.71875	2.2946850000000003	2.87062	0.0191972	5.67977e-5	0.108861	0.00616182
chr1	223758784	223758881	320730	0	+	0.525773	(0.515,0.57]	chr1	36914	13	EXON_LNCRNA	EXON_LNCRNA:SS3_PROX:INTRON	CAPN2	ENSG00000162909.18	ENST00000433674.6:ENST00000295006.6:ENST00000474026.5:ENST00000487223.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	22	219	2	1.89808	2.294655	2.69123	0.00138348	1.66725e-5	0.0338784	0.00308022
chr19	5707507	5707596	7124579	0	-	0.595506	(0.57,1]	chr19	717136	4	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	LONP1	ENSG00000196365.12	ENST00000360614.8:ENST00000587552.5:ENST00000540670.6:ENST00000593119.5:ENST00000585374.5:ENST00000590558.5:ENST00000590729.5:ENST00000590206.1:ENST00000588589.5:ENST00000587365.1:ENST00000591321.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	34	2	2.28103	2.2946400000000002	2.30825	0.0151554	0.00499769	0.108535	0.0617433
chr19	28490156	28490255	7165996	0	-	0.545455	(0.515,0.57]	chr19	724189	219	INTRON	INTRON	ENSG00000283403:ENSG00000267243	ENSG00000283403.1:ENSG00000267243.6	ENST00000592347.5:ENST00000593065.5	lncRNA	lncRNA	lncRNA	lncRNA	18	183	2	2.12325	2.294575	2.4659	8.73851e-4	8.00648e-5	0.0270926	0.00745482
chr1	28955448	28955548	59365	0	+	0.48	(0.476,0.515]	chr1	7621	403	INTRON	INTRON	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000647918.1:ENST00000646800.1:ENST00000644342.1:ENST00000646189.1:ENST00000482464.6:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000646260.1:ENST00000373798.5:ENST00000644600.1:ENST00000649674.1:ENST00000643173.1:ENST00000343067.9:ENST00000644780.1:ENST00000650265.1:ENST00000648181.1:ENST00000643604.1:ENST00000648891.1:ENST00000373797.2:ENST00000349460.9:ENST00000645184.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	53	2	2.13304	2.29451	2.45598	0.024866	0.00945755	0.132101	0.0817766
chr16	47133321	47133421	6480504	0	-	0.51	(0.476,0.515]	chr16	626929	9	INTRON	INTRON	NETO2	ENSG00000171208.10	ENST00000562435.6:ENST00000303155.9	protein_coding	protein_coding	protein_coding	protein_coding	4	53	2	2.13304	2.29451	2.45598	0.024866	0.00945755	0.132101	0.0817766
chr8	26297496	26297594	3716154	0	+	0.326531	(0.32,0.35]	chr8	345364	33	INTRON	INTRON	PPP2R2A	ENSG00000221914.11	ENST00000380737.8:ENST00000520329.5:ENST00000518254.5:ENST00000524169.5:ENST00000518397.5:ENST00000522535.5:ENST00000665949.1:ENST00000522150.5:ENST00000523473.5:ENST00000521095.5:ENST00000660435.1:ENST00000523925.5:ENST00000524099.5:ENST00000315985.7:ENST00000519636.5:ENST00000522482.5:ENST00000521557.5:ENST00000519439.5:ENST00000521484.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	14	194	2	2.25511	2.294505	2.3339	0.00309417	3.2337e-4	0.0498063	0.0159645
chr15	30661330	30661430	5992634	0	+	0.39	(0.378,0.408]	chr15	569767	21	INTRON	INTRON	ENSG00000284906:ENSG00000285035:ENSG00000187951	ENSG00000284906.3:ENSG00000285035.2:ENSG00000187951.11	ENST00000685924.1:ENST00000563110.6:ENST00000566548.5:ENST00000602616.6:ENST00000562954.1	protein_coding	protein_coding	protein_coding:lncRNA:transcribed_unprocessed_pseudogene	protein_coding:nonsense_mediated_decay:lncRNA:processed_transcript	7	83	2	1.82004	2.294485	2.76893	0.012605	0.00316735	0.0980801	0.0503085
chr22	21975900	21975995	7561958	0	-	0.368421	(0.35,0.378]	chr22	773549	3	UTR5	UTR5:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TOP3B	ENSG00000100038.20	ENST00000357179.10:ENST00000457179.5:ENST00000444502.5:ENST00000398793.6:ENST00000424393.5:ENST00000437929.5:ENST00000430142.5:ENST00000456075.5:ENST00000449704.5:ENST00000442653.1:ENST00000437103.1:ENST00000434517.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	133	2	1.97751	2.294345	2.61118	0.00466938	9.76258e-4	0.0630955	0.0284677
chr9	125135434	125135534	4351899	0	-	0.53	(0.515,0.57]	chr9	399530	690	INTRON	INTRON	SCAI	ENSG00000173611.18	ENST00000336505.11:ENST00000373549.8:ENST00000477186.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	46	2	1.68552	2.294315	2.90311	0.0292028	0.0094233	0.141637	0.0817766
chr17	57442026	57442124	6634615	0	+	0.5	(0.476,0.515]	chr17	648053	9	INTRON	INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000674961.1:ENST00000582453.5:ENST00000675656.1:ENST00000322684.7:ENST00000442934.6:ENST00000579180.2:ENST00000579205.5:ENST00000579505.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	59	2	1.43644	2.2942299999999998	3.15202	0.047372	0.00455841	0.169265	0.0595107
chr6	47508533	47508633	2873873	0	+	0.43	(0.408,0.44]	chr6	272731	47	INTRON	INTRON	CD2AP	ENSG00000198087.7	ENST00000359314.5	protein_coding	protein_coding	protein_coding	protein_coding	10	123	2	1.57254	2.2942299999999998	3.01592	0.0258366	5.77417e-5	0.12129	0.00620725
chr1	120156541	120156640	533631	0	-	0.282828	(0.28,0.32]	chr1	62759	58	UTR3	UTR3:EXON_MRNA	SEC22B	ENSG00000265808.4	ENST00000578049.4	protein_coding	protein_coding	protein_coding	protein_coding	11	172	2	2.12209	2.2941599999999998	2.46623	0.00604669	5.37806e-4	0.0676501	0.0209783
chr16	89379814	89379914	6542483	0	-	0.26	[0,0.28]	chr16	634240	63	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000647238.1:ENST00000644045.1:ENST00000643147.1:ENST00000644139.1:ENST00000568512.6:ENST00000566973.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	56	2	2.20073	2.29415	2.38757	0.0552962	0.0235708	0.165463	0.128907
chr6	17929035	17929135	3067966	0	-	0.24	[0,0.28]	chr6	285100	305	INTRON	INTRON	KIF13A	ENSG00000137177.20	ENST00000378814.9:ENST00000259711.11:ENST00000378826.6:ENST00000378843.6:ENST00000636847.1:ENST00000507576.1:ENST00000505588.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	56	2	2.20073	2.29415	2.38757	0.0552962	0.0235708	0.165463	0.128907
chr3	177052891	177052986	1870982	0	-	0.494737	(0.476,0.515]	chr3	187354	8	INTRON	INTRON	TBL1XR1	ENSG00000177565.18	ENST00000457928.7:ENST00000430069.5:ENST00000673974.1:ENST00000631253.2:ENST00000352800.10:ENST00000422442.6:ENST00000428970.5:ENST00000424913.5:ENST00000437738.5:ENST00000431421.5:ENST00000635794.1:ENST00000630796.2:ENST00000450267.5:ENST00000630833.2:ENST00000431674.5:ENST00000422066.5:ENST00000443315.5:ENST00000627825.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	52	2	2.05154	2.294125	2.53671	0.0336015	0.00624027	0.134145	0.0718843
chr5	149498303	149498402	2750532	0	-	0.292929	(0.28,0.32]	chr5	258995	5	UTR3	UTR3:EXON_MRNA:INTRON	CSNK1A1:ENSG00000230551	ENSG00000113712.19:ENSG00000230551.4	ENST00000261798.10:ENST00000377843.8:ENST00000657001.1:ENST00000499521.2:ENST00000515768.6:ENST00000606719.6:ENST00000657462.1:ENST00000661952.1:ENST00000504676.5:ENST00000515435.5:ENST00000662268.1:ENST00000657706.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	59	2	1.71442	2.29412	2.87382	0.0454351	0.014868	0.164236	0.0989021
chr14	103454364	103454463	5826331	0	+	0.494949	(0.476,0.515]	chr14	552855	20	INTRON	INTRON	MARK3	ENSG00000075413.19	ENST00000678179.1:ENST00000676838.1:ENST00000677348.1:ENST00000677404.1:ENST00000676694.1:ENST00000676938.1:ENST00000678619.1:ENST00000676897.1:ENST00000677214.1:ENST00000677942.1:ENST00000676830.1:ENST00000678999.1:ENST00000677228.1:ENST00000556744.2:ENST00000677104.1:ENST00000679330.1:ENST00000560417.6:ENST00000440884.7:ENST00000676475.1:ENST00000677035.1:ENST00000678022.1:ENST00000677560.1:ENST00000561314.6:ENST00000429436.7:ENST00000677118.1:ENST00000676564.1:ENST00000678169.1:ENST00000678175.1:ENST00000678897.1:ENST00000678278.1:ENST00000676645.1:ENST00000677829.1:ENST00000678302.1:ENST00000677133.1:ENST00000561164.2:ENST00000558223.6:ENST00000559328.6:ENST00000678207.1:ENST00000677360.1:ENST00000676905.1:ENST00000678343.1:ENST00000677347.1:ENST00000678071.1:ENST00000677432.1:ENST00000678237.1:ENST00000677604.1:ENST00000676518.1:ENST00000677051.1:ENST00000677857.1:ENST00000677869.1:ENST00000678423.1:ENST00000560603.6:ENST00000416682.6:ENST00000303622.13:ENST00000216288.11:ENST00000679105.1:ENST00000553942.5:ENST00000335102.9:ENST00000678091.1:ENST00000561071.5:ENST00000558698.5:ENST00000559268.5:ENST00000560731.5:ENST00000676745.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	40	2	2.10874	2.294115	2.47949	0.0326974	0.0285608	0.145164	0.12666
chr19	52928091	52928186	7209100	0	-	0.484211	(0.476,0.515]	chr19	731741	11	EXON_LNCRNA	EXON_LNCRNA	ZNF321P	ENSG00000213801.4	ENST00000313956.4	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	3	40	2	2.10874	2.294115	2.47949	0.0326974	0.0285608	0.145164	0.12666
chr7	75715167	75715267	3561013	0	-	0.51	(0.476,0.515]	chr7	331784	601	INTRON	INTRON	HIP1	ENSG00000127946.17	ENST00000336926.11:ENST00000434438.6:ENST00000485723.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	40	2	2.10874	2.294115	2.47949	0.0326974	0.0285608	0.145164	0.12666
chr10	80189341	80189440	4658098	0	-	0.373737	(0.35,0.378]	chr10	429147	75	INTRON	INTRON	ANXA11	ENSG00000122359.18	ENST00000372231.7:ENST00000438331.5:ENST00000422982.8:ENST00000463657.1:ENST00000474545.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	43	2	2.24535	2.294065	2.34278	0.0647516	0.0129593	0.179192	0.0991015
chr5	131743864	131743963	2720212	0	-	0.363636	(0.35,0.378]	chr5	255724	125	INTRON	INTRON	FNIP1	ENSG00000217128.13	ENST00000510461.6:ENST00000307954.12:ENST00000307968.11:ENST00000511848.1	protein_coding	protein_coding	protein_coding	protein_coding	3	43	2	2.24535	2.294065	2.34278	0.0647516	0.0129593	0.179192	0.0991015
chr4	39905176	39905273	2131464	0	-	0.43299	(0.408,0.44]	chr4	210187	6	INTRON	INTRON	PDS5A	ENSG00000121892.15	ENST00000303538.13:ENST00000503396.5:ENST00000513798.1:ENST00000512643.1:ENST00000503867.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	78	2	2.00228	2.293965	2.58565	0.0389732	6.66092e-4	0.143072	0.0233804
chr4	1959940	1960040	1911492	0	+	0.48	(0.476,0.515]	chr4	191845	2	SS5_PROX	SS5_PROX:INTRON	NSD2	ENSG00000109685.19	ENST00000508803.6:ENST00000382891.9:ENST00000353275.9:ENST00000382892.6:ENST00000382895.7:ENST00000312087.10:ENST00000677559.1:ENST00000482415.6:ENST00000382888.3:ENST00000679039.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	52	2	2.26789	2.2939499999999997	2.32001	0.0176567	0.0136217	0.105233	0.101682
chr3	44846398	44846497	1413110	0	+	0.323232	(0.32,0.35]	chr3	148330	28	INTRON	INTRON	KIF15	ENSG00000163808.17	ENST00000438321.5:ENST00000326047.9:ENST00000425755.5:ENST00000453693.1:ENST00000422209.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	46	2	2.23182	2.2938650000000003	2.35591	0.068598	0.0128129	0.184298	0.0990564
chr15	89110161	89110260	6094788	0	+	0.484848	(0.476,0.515]	chr15	579989	34	INTRON	INTRON	ABHD2	ENSG00000140526.18	ENST00000569411.5:ENST00000569550.5:ENST00000564876.5:ENST00000565066.5:ENST00000565973.5:ENST00000352732.10:ENST00000565825.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	64	2	2.21025	2.29378	2.37731	0.0111793	0.00913757	0.0937192	0.0812335
chr22	38490956	38491056	7587928	0	-	0.45	(0.44,0.476]	chr22	776723	16	EXON_MRNA	EXON_MRNA:INTRON	DDX17	ENSG00000100201.23	ENST00000403230.3:ENST00000396821.8:ENST00000216019.11:ENST00000475004.6:ENST00000432525.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	39	448	2	2.05775	2.2937700000000003	2.52979	1.5957e-4	3.87423e-5	0.0108718	0.00532412
chr17	1379438	1379538	6699401	0	-	0.42	(0.408,0.44]	chr17	655552	93	INTRON	INTRON	YWHAE	ENSG00000108953.17	ENST00000264335.13:ENST00000571732.5:ENST00000573026.1:ENST00000573196.5:ENST00000575977.1:ENST00000469398.5:ENST00000486241.1:ENST00000489287.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	39	2	2.14732	2.2936	2.43988	0.0398236	0.0237354	0.143072	0.129075
chr5	72895857	72895957	2387943	0	+	0.41	(0.408,0.44]	chr5	230469	5	EXON_MRNA	EXON_MRNA:INTRON	TNPO1	ENSG00000083312.19	ENST00000680533.1:ENST00000337273.10:ENST00000680025.1:ENST00000523768.5:ENST00000681711.1:ENST00000679378.1:ENST00000506351.6:ENST00000605210.1:ENST00000680111.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	39	2	2.14732	2.2936	2.43988	0.0398236	0.0237354	0.143072	0.129075
chr7	73475070	73475170	3554621	0	-	0.41	(0.408,0.44]	chr7	330777	42	INTRON	INTRON	BAZ1B	ENSG00000009954.11	ENST00000339594.9:ENST00000404251.1	protein_coding	protein_coding	protein_coding	protein_coding	3	39	2	2.14732	2.2936	2.43988	0.0398236	0.0237354	0.143072	0.129075
chr1	12028626	12028720	26917	0	+	0.425532	(0.408,0.44]	chr1	3207	2	SS3_PROX	SS3_PROX:INTRON	MIIP	ENSG00000116691.11	ENST00000478749.5:ENST00000235332.6:ENST00000466860.5:ENST00000498685.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	89	2	2.05947	2.293575	2.52768	0.0333232	4.47322e-4	0.134145	0.0191768
chr3	37317182	37317280	1396504	0	+	0.520408	(0.515,0.57]	chr3	146397	12	INTRON	INTRON	GOLGA4	ENSG00000144674.17	ENST00000435830.6:ENST00000444882.5:ENST00000356847.8:ENST00000361924.7:ENST00000429018.5:ENST00000437131.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	41	2	2.06206	2.2935499999999998	2.52504	0.029342	0.0135396	0.128055	0.101363
chrX	41135626	41135723	7644567	0	+	0.587629	(0.57,1]	chrX	782255	4	INTRON	INTRON	USP9X	ENSG00000124486.14	ENST00000324545.9:ENST00000378308.7	protein_coding	protein_coding	protein_coding	protein_coding	5	33	2	2.07956	2.2934900000000003	2.50742	0.013114	0.00631173	0.0998629	0.0687526
chr20	50094415	50094515	7353766	0	-	0.3	(0.28,0.32]	chr20	749863	98	INTRON	INTRON	UBE2V1	ENSG00000244687.13	ENST00000340309.7:ENST00000371677.7:ENST00000415862.6:ENST00000557021.5:ENST00000617119.4:ENST00000625172.3:ENST00000396059.7:ENST00000371674.8:ENST00000371657.9:ENST00000483534.5:ENST00000492371.6:ENST00000486653.5:ENST00000490555.1:ENST00000493090.5:ENST00000467839.5:ENST00000472923.5:ENST00000432266.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	141	2	2.12073	2.2934799999999997	2.46623	0.0157269	5.37806e-4	0.101453	0.0209783
chr11	5451902	5452002	4897740	0	-	0.33	(0.32,0.35]	chr11	459193	105	INTRON	INTRON	HBG2:ENSG00000239920:HBE1:OR51B5	ENSG00000196565.15:ENSG00000239920.2:ENSG00000213931.7:ENSG00000167355.8	ENST00000380252.6:ENST00000380259.7:ENST00000292896.3:ENST00000380237.5:ENST00000420726.6:ENST00000420465.6:ENST00000415970.6:ENST00000418729.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:nonsense_mediated_decay:processed_transcript	12	169	2	2.2904	2.293445	2.29649	0.00266524	7.4692e-4	0.0463154	0.025045
chr8	41750745	41750844	3938590	0	-	0.50505	(0.476,0.515]	chr8	361117	163	INTRON	INTRON	ANK1	ENSG00000029534.21	ENST00000347528.8:ENST00000265709.13:ENST00000289734.13	protein_coding	protein_coding	protein_coding	protein_coding	5	53	2	1.53534	2.29343	3.05152	0.0476737	0.0064848	0.170116	0.0699952
chr11	982971	983069	4721667	0	+	0.306122	(0.28,0.32]	chr11	436679	13	INTRON	INTRON	AP2A2	ENSG00000183020.15	ENST00000529818.6:ENST00000332231.9:ENST00000448903.7:ENST00000534328.6:ENST00000525796.5:ENST00000529858.6:ENST00000693238.1:ENST00000687890.1:ENST00000687792.1:ENST00000528815.5:ENST00000528195.6:ENST00000531548.6:ENST00000534485.6:ENST00000527024.2:ENST00000526753.6:ENST00000530801.6:ENST00000524559.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	80	2	2.18212	2.2933500000000002	2.40458	0.0141047	0.010265700000000001	0.0959618	0.089002
chr1	114486669	114486769	527654	0	-	0.41	(0.408,0.44]	chr1	62153	219	INTRON	INTRON	TRIM33	ENSG00000197323.12	ENST00000358465.7:ENST00000369543.6	protein_coding	protein_coding	protein_coding	protein_coding	3	39	2	1.93243	2.2933149999999998	2.6542	0.0441194	0.0227514	0.162255	0.117618
chr16	28728143	28728242	6334086	0	+	0.434343	(0.408,0.44]	chr16	606463	5	INTRON	INTRON	EIF3C	ENSG00000184110.15	ENST00000566501.5:ENST00000395587.5:ENST00000331666.11:ENST00000564243.5:ENST00000566866.5:ENST00000565932.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	39	2	1.93243	2.2933149999999998	2.6542	0.0441194	0.0227514	0.162255	0.117618
chr3	47831525	47831625	1420264	0	+	0.41	(0.408,0.44]	chr3	149238	5	INTRON	INTRON	DHX30	ENSG00000132153.15	ENST00000395745.6:ENST00000445061.6:ENST00000441384.5:ENST00000348968.8:ENST00000446256.6:ENST00000619982.4:ENST00000457607.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	39	2	1.93243	2.2933149999999998	2.6542	0.0441194	0.0227514	0.162255	0.117618
chr8	129922811	129922911	4062992	0	-	0.42	(0.408,0.44]	chr8	369828	99	INTRON	INTRON	CYRIB	ENSG00000153310.21	ENST00000694912.1:ENST00000519824.6:ENST00000523288.5:ENST00000519110.5:ENST00000401979.6:ENST00000523509.5:ENST00000522746.5:ENST00000517654.5:ENST00000522250.5:ENST00000519540.5:ENST00000522941.5:ENST00000519142.5:ENST00000518879.5:ENST00000522702.5:ENST00000521223.5:ENST00000520204.5:ENST00000518283.5:ENST00000523993.5:ENST00000520254.5:ENST00000519020.5:ENST00000518167.5:ENST00000517672.5:ENST00000519070.5:ENST00000522361.1:ENST00000518344.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	39	2	1.93243	2.2933149999999998	2.6542	0.0441194	0.0227514	0.162255	0.117618
chr12	123206266	123206366	5443789	0	-	0.44	(0.408,0.44]	chr12	520832	25	INTRON	INTRON	MPHOSPH9	ENSG00000051825.15	ENST00000606320.6:ENST00000541076.6:ENST00000545556.6:ENST00000302373.8:ENST00000539024.5:ENST00000539336.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	87	2	1.91269	2.293305	2.67392	0.0153219	0.00106946	0.100173	0.0300133
chr3	154307187	154307286	1843361	0	-	0.343434	(0.32,0.35]	chr3	185450	5	INTRON	INTRON	DHX36	ENSG00000174953.14	ENST00000496811.6:ENST00000308361.10:ENST00000329463.9:ENST00000481941.5	protein_coding	protein_coding	protein_coding	protein_coding	4	61	2	2.18092	2.29311	2.4053	0.0256608	0.0108284	0.120491	0.0920575
chr3	47655813	47655912	1683788	0	-	0.262626	[0,0.28]	chr3	171996	167	INTRON	INTRON	SMARCC1	ENSG00000173473.11	ENST00000254480.10:ENST00000425518.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	76	2	2.06132	2.2931049999999997	2.52489	0.0408268	0.0084136	0.1451	0.082518
chr5	82277105	82277192	2666417	0	-	0.494253	(0.476,0.515]	chr5	252462	2	INTRON	INTRON	RPS23	ENSG00000186468.13	ENST00000296674.13:ENST00000651545.1:ENST00000510210.5:ENST00000512493.5:ENST00000510019.5:ENST00000507980.1:ENST00000504293.5:ENST00000503605.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	13	160	2	2.21172	2.2931	2.37448	0.00419067	5.77734e-4	0.0591344	0.0223108
chr3	141917171	141917269	1526490	0	+	0.397959	(0.378,0.408]	chr3	159046	2	INTRON	INTRON	ATP1B3	ENSG00000069849.11	ENST00000465172.5:ENST00000286371.8:ENST00000466678.5:ENST00000462082.1:ENST00000482635.1:ENST00000487199.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	91	2	2.06535	2.2930450000000002	2.52074	0.0159849	9.57797e-4	0.101453	0.0284518
chr16	22287947	22288046	6321514	0	+	0.383838	(0.378,0.408]	chr16	605178	41	UTR3	UTR3:EXON_MRNA	EEF2K	ENSG00000103319.12	ENST00000263026.10	protein_coding	protein_coding	protein_coding	protein_coding	4	60	2	1.81685	2.29289	2.76893	0.0597868	0.00316735	0.189982	0.0503085
chr2	151425038	151425136	893362	0	+	0.357143	(0.35,0.378]	chr2	98908	14	INTRON	INTRON	RIF1	ENSG00000080345.18	ENST00000453091.6:ENST00000428287.6:ENST00000444746.7:ENST00000243326.9:ENST00000414861.6:ENST00000430328.6	protein_coding	protein_coding	protein_coding	protein_coding	10	124	2	1.50831	2.29286	3.07741	0.0277212	1.44425e-4	0.123904	0.010445
chr6	42206904	42207003	3095336	0	-	0.414141	(0.408,0.44]	chr6	289537	2	UTR3	UTR3:EXON_MRNA	MRPS10	ENSG00000048544.6	ENST00000053468.4	protein_coding	protein_coding	protein_coding	protein_coding	11	121	2	1.7906	2.29285	2.7951	0.00570519	8.18693e-4	0.0681157	0.0264086
chr2	55233583	55233666	781603	0	+	0.373494	(0.35,0.378]	chr2	87985	3	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPS27A	ENSG00000143947.15	ENST00000402285.7:ENST00000449323.5:ENST00000404735.1:ENST00000272317.11:ENST00000471772.6:ENST00000478196.6:ENST00000494756.1:ENST00000495843.1:ENST00000468810.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	92	2	1.95039	2.29283	2.63527	0.0095436	0.00443588	0.082068	0.061054
chr1	473763	473863	355287	0	-	0.41	(0.408,0.44]	chr1	40950	935	INTRON	INTRON	ENSG00000237094	ENSG00000237094.12	ENST00000455207.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	2	29	2	2.18807	2.2927850000000003	2.3975	0.0708044	0.040266	0.184528	0.161534
chr10	69129528	69129627	4444603	0	+	0.424242	(0.408,0.44]	chr10	410016	49	INTRON	INTRON	VPS26A	ENSG00000122958.15	ENST00000373382.5:ENST00000395098.5:ENST00000489656.5:ENST00000263559.11:ENST00000497564.5:ENST00000490696.5:ENST00000467852.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	29	2	2.18807	2.2927850000000003	2.3975	0.0708044	0.040266	0.184528	0.161534
chr15	74000273	74000373	6061076	0	+	0.43	(0.408,0.44]	chr15	577060	14	INTRON	INTRON	PML	ENSG00000140464.20	ENST00000395135.7:ENST00000268058.8:ENST00000395132.6:ENST00000268059.10:ENST00000354026.10:ENST00000565898.5:ENST00000569477.5:ENST00000569965.5:ENST00000564428.5:ENST00000359928.8:ENST00000436891.7:ENST00000435786.6:ENST00000567543.5:ENST00000563500.5:ENST00000564725.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	29	2	2.18807	2.2927850000000003	2.3975	0.0708044	0.040266	0.184528	0.161534
chr19	10564428	10564528	7136542	0	-	0.43	(0.408,0.44]	chr19	719698	1	SS5_PROX	SS5_PROX:INTRON	KRI1	ENSG00000129347.21	ENST00000652042.1:ENST00000312962.12:ENST00000536689.5:ENST00000478863.5:ENST00000612875.4:ENST00000539027.5:ENST00000432197.5:ENST00000543682.3:ENST00000546063.5:ENST00000537964.5:ENST00000544397.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	29	2	2.18807	2.2927850000000003	2.3975	0.0708044	0.040266	0.184528	0.161534
chr21	14983868	14983968	7431446	0	-	0.43	(0.408,0.44]	chr21	757964	150	INTRON	INTRON	NRIP1	ENSG00000180530.11	ENST00000400202.5:ENST00000318948.7:ENST00000400199.5:ENST00000411932.1:ENST00000638122.1	protein_coding	protein_coding	protein_coding	protein_coding	2	29	2	2.18807	2.2927850000000003	2.3975	0.0708044	0.040266	0.184528	0.161534
chr3	133586062	133586162	1509618	0	+	0.41	(0.408,0.44]	chr3	157882	1	SS3_PROX	SS3_PROX:INTRON	CDV3	ENSG00000091527.17	ENST00000688838.1:ENST00000264993.8:ENST00000431519.6:ENST00000503932.6:ENST00000508481.5:ENST00000420115.6:ENST00000511392.5:ENST00000507408.5:ENST00000515421.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	29	2	2.18807	2.2927850000000003	2.3975	0.0708044	0.040266	0.184528	0.161534
chr4	55441232	55441332	2148824	0	-	0.41	(0.408,0.44]	chr4	211426	23	INTRON	INTRON	CLOCK	ENSG00000134852.15	ENST00000513440.6:ENST00000309964.8:ENST00000511124.1:ENST00000381322.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	29	2	2.18807	2.2927850000000003	2.3975	0.0708044	0.040266	0.184528	0.161534
chr5	138514106	138514206	2732374	0	-	0.41	(0.408,0.44]	chr5	257394	4	SS3_PROX	SS3_PROX:INTRON	ETF1	ENSG00000120705.13	ENST00000360541.10:ENST00000499810.6:ENST00000503014.5:ENST00000506345.5:ENST00000512198.1:ENST00000503183.1:ENST00000572514.5:ENST00000507939.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	29	2	2.18807	2.2927850000000003	2.3975	0.0708044	0.040266	0.184528	0.161534
chr7	99406942	99407041	3583307	0	-	0.414141	(0.408,0.44]	chr7	333755	16	INTRON	INTRON	PDAP1	ENSG00000106244.13	ENST00000350498.8:ENST00000426447.3:ENST00000626285.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	29	2	2.18807	2.2927850000000003	2.3975	0.0708044	0.040266	0.184528	0.161534
chr7	152206206	152206303	3678958	0	-	0.42268	(0.408,0.44]	chr7	341521	6	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000683200.1:ENST00000682283.1:ENST00000473186.5:ENST00000679882.1:ENST00000680969.1:ENST00000681033.1:ENST00000682176.1:ENST00000679645.1:ENST00000683254.1:ENST00000684550.1:ENST00000489110.2:ENST00000681838.1:ENST00000683490.1:ENST00000684623.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	29	2	2.18807	2.2927850000000003	2.3975	0.0708044	0.040266	0.184528	0.161534
chr9	36217169	36217266	4248574	0	-	0.42268	(0.408,0.44]	chr9	391302	29	UTR3	UTR3:EXON_MRNA	GNE	ENSG00000159921.20	ENST00000396594.8:ENST00000642385.2:ENST00000543356.7:ENST00000539208.5:ENST00000447283.6	protein_coding	protein_coding	protein_coding	protein_coding	2	29	2	2.18807	2.2927850000000003	2.3975	0.0708044	0.040266	0.184528	0.161534
chrX	65703526	65703626	7671446	0	+	0.42	(0.408,0.44]	chrX	785145	353	INTRON	INTRON	MSN	ENSG00000147065.17	ENST00000609672.5:ENST00000360270.7	protein_coding	protein_coding	protein_coding	protein_coding	2	29	2	2.18807	2.2927850000000003	2.3975	0.0708044	0.040266	0.184528	0.161534
chr1	40379492	40379592	81501	0	+	0.3	(0.28,0.32]	chr1	10553	44	INTRON	INTRON	SMAP2	ENSG00000084070.12	ENST00000435168.6:ENST00000372718.8:ENST00000372708.5	protein_coding	protein_coding	protein_coding	protein_coding	9	121	2	1.19543	2.29276	3.39009	0.0781725	1.74666e-4	0.197251	0.0114806
chr7	32878040	32878139	3515485	0	-	0.434343	(0.408,0.44]	chr7	327774	25	INTRON	INTRON	KBTBD2	ENSG00000170852.12	ENST00000304056.9:ENST00000485611.5:ENST00000477129.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	75	2	2.16746	2.29271	2.41796	0.024436	0.0015483	0.12011	0.0363194
chr8	9621571	9621670	3700159	0	+	0.343434	(0.32,0.35]	chr8	343193	55	INTRON	INTRON	TNKS	ENSG00000173273.16	ENST00000310430.11:ENST00000520408.5:ENST00000518281.5:ENST00000518027.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	74	2	1.99785	2.29269	2.58753	0.0215554	0.00560122	0.114686	0.0678837
chr1	167420173	167420272	246880	0	+	0.484848	(0.476,0.515]	chr1	29408	42	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	POU2F1	ENSG00000143190.23	ENST00000367866.7:ENST00000271411.8:ENST00000429375.6:ENST00000367865.5:ENST00000541643.7:ENST00000367862.9:ENST00000443275.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	47	2	1.63838	2.29265	2.94692	0.0555021	0.00794331	0.165463	0.0797304
chr18	80139001	80139097	6938391	0	+	0.34375	(0.32,0.35]	chr18	686213	3	UTR3	UTR3:EXON_MRNA:INTRON	ADNP2	ENSG00000101544.9	ENST00000262198.9:ENST00000561195.1	protein_coding	protein_coding	protein_coding	protein_coding	6	84	2	1.95408	2.292615	2.63115	0.0124054	0.00608073	0.0973643	0.0676501
chr1	24650186	24650278	45812	0	+	0.391304	(0.378,0.408]	chr1	5685	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SRRM1	ENSG00000133226.18	ENST00000468822.5:ENST00000374389.8:ENST00000323848.14:ENST00000479034.5:ENST00000596378.1:ENST00000494934.5:ENST00000495561.1:ENST00000485441.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	70	2	1.73859	2.2926100000000003	2.84663	0.0133954	0.0123927	0.0973643	0.0946278
chr5	66179362	66179461	2372856	0	+	0.282828	(0.28,0.32]	chr5	228707	6	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	SREK1	ENSG00000153914.16	ENST00000334121.11:ENST00000284041.7:ENST00000519259.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	123	2	2.12972	2.292595	2.45547	0.00495986	0.00413957	0.0615009	0.0588921
chr16	20686975	20687075	6316806	0	+	0.48	(0.476,0.515]	chr16	604566	49	INTRON	INTRON	ACSM3	ENSG00000005187.12	ENST00000568235.5:ENST00000501740.6:ENST00000561584.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	18	193	2	1.85501	2.292545	2.73008	0.00165926	2.14494e-4	0.0376822	0.0134058
chr22	20543480	20543579	7479712	0	+	0.414141	(0.408,0.44]	chr22	762972	59	INTRON	INTRON	MED15	ENSG00000099917.17	ENST00000445987.5:ENST00000444094.5:ENST00000414658.5:ENST00000486656.5:ENST00000433831.5:ENST00000432052.5:ENST00000292733.11:ENST00000263205.11:ENST00000477824.5:ENST00000406969.5:ENST00000382974.6:ENST00000441501.5:ENST00000445189.5:ENST00000451058.5:ENST00000473028.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	87	2	1.97721	2.29253	2.60785	0.0121661	0.00146754	0.0910127	0.035104
chr2	8960036	8960136	1063131	0	-	0.33	(0.32,0.35]	chr2	113381	10	INTRON	INTRON	MBOAT2	ENSG00000143797.12	ENST00000305997.8:ENST00000486484.5:ENST00000477073.5:ENST00000462696.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	62	2	1.59364	2.292445	2.99125	0.0413426	0.00958447	0.161557	0.0820838
chr2	130131779	130131878	863590	0	+	0.333333	(0.32,0.35]	chr2	96903	16	INTRON	INTRON	MED15P9	ENSG00000223760.4	ENST00000427638.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	5	62	2	1.59364	2.292445	2.99125	0.0413426	0.00958447	0.161557	0.0820838
chr7	74467654	74467754	3333793	0	+	0.33	(0.32,0.35]	chr7	310175	131	INTRON	INTRON	GTF2IRD1	ENSG00000006704.11	ENST00000265755.7:ENST00000424337.7:ENST00000455841.6	protein_coding	protein_coding	protein_coding	protein_coding	5	62	2	1.59364	2.292445	2.99125	0.0413426	0.00958447	0.161557	0.0820838
chr4	67653495	67653595	2153976	0	-	0.41	(0.408,0.44]	chr4	212133	39	INTRON	INTRON	UBA6	ENSG00000033178.13	ENST00000322244.10	protein_coding	protein_coding	protein_coding	protein_coding	6	76	2	2.04611	2.29236	2.53861	0.016628	0.00202413	0.102621	0.0416117
chr7	72908075	72908174	3330079	0	+	0.383838	(0.378,0.408]	chr7	309565	166	INTRON	INTRON	POM121	ENSG00000196313.13	ENST00000627934.3:ENST00000395270.5	protein_coding	protein_coding	protein_coding	protein_coding	4	49	2	1.53052	2.292225	3.05393	0.0744544	0.00551532	0.192012	0.0672816
chr1	167960441	167960541	248727	0	+	0.52	(0.515,0.57]	chr1	29542	82	INTRON	INTRON	DCAF6	ENSG00000143164.16	ENST00000450548.5:ENST00000470919.5:ENST00000432587.6:ENST00000367843.7:ENST00000470721.5:ENST00000367840.4:ENST00000312263.10:ENST00000455334.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	83	2	2.24433	2.2922200000000004	2.34011	0.00725078	0.00106662	0.072984	0.0300133
chr17	31974884	31974981	6596059	0	+	0.237113	[0,0.28]	chr17	641565	13	INTRON	INTRON	SUZ12	ENSG00000178691.11	ENST00000322652.10:ENST00000580398.1	protein_coding	protein_coding	protein_coding	protein_coding	4	77	2	1.85666	2.29217	2.72768	0.0660997	0.00405445	0.181924	0.0578376
chr4	183698035	183698135	2086575	0	+	0.23	[0,0.28]	chr4	206267	2	SS5_PROX	SS5_PROX:INTRON	TRAPPC11	ENSG00000168538.16	ENST00000357207.8:ENST00000334690.11:ENST00000505676.5:ENST00000512476.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	77	2	1.85666	2.29217	2.72768	0.0660997	0.00405445	0.181924	0.0578376
chr1	65289183	65289283	135885	0	+	0.48	(0.476,0.515]	chr1	15346	239	INTRON	INTRON	DNAJC6	ENSG00000116675.16	ENST00000463018.5:ENST00000494710.6:ENST00000263441.11:ENST00000395325.7:ENST00000483402.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	16	169	2	1.6032	2.29216	2.98112	0.00836351	7.29071e-5	0.0774402	0.0071219
chr7	123734019	123734119	3632511	0	-	0.38	(0.378,0.408]	chr7	337581	244	INTRON	INTRON	WASL	ENSG00000106299.8	ENST00000223023.5	protein_coding	protein_coding	protein_coding	protein_coding	9	101	2	2.02825	2.29216	2.55607	0.00704647	0.00250079	0.0718189	0.0463797
chr17	49326508	49326608	6792194	0	-	0.43	(0.408,0.44]	chr17	670175	36	INTRON	INTRON	ZNF652	ENSG00000198740.9	ENST00000430262.3:ENST00000508237.5:ENST00000362063.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	47	2	1.93002	2.29211	2.6542	0.0227514	0.022095	0.123903	0.117618
chr19	45119316	45119416	7079300	0	+	0.52	(0.515,0.57]	chr19	708078	105	INTRON	INTRON	PPP1R37	ENSG00000104866.11	ENST00000544069.2:ENST00000221462.9:ENST00000544897.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	40	2	1.7492	2.2921050000000003	2.83501	0.0382504	0.0117686	0.15832	0.0894475
chr14	102727198	102727297	5823894	0	+	0.585859	(0.57,1]	chr14	552550	8	UTR3	UTR3:EXON_MRNA	RCOR1	ENSG00000089902.10	ENST00000262241.7	protein_coding	protein_coding	protein_coding	protein_coding	3	21	2	2.05026	2.292045	2.53383	0.0321326	0.02547	0.145026	0.12011
chr6	158061791	158061891	3017822	0	+	0.6	(0.57,1]	chr6	281516	4	SS3_PROX	SS3_PROX:INTRON	SYNJ2	ENSG00000078269.15	ENST00000355585.9:ENST00000640338.1:ENST00000638626.1:ENST00000485863.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	21	2	2.05026	2.292045	2.53383	0.0321326	0.02547	0.145026	0.12011
chr9	124914403	124914502	4349654	0	-	0.646465	(0.57,1]	chr9	399362	20	INTRON	INTRON	GOLGA1	ENSG00000136935.14	ENST00000373555.9:ENST00000475407.5:ENST00000485337.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	21	2	2.05026	2.292045	2.53383	0.0321326	0.02547	0.145026	0.12011
chr1	32662337	32662437	65943	0	+	0.44	(0.408,0.44]	chr1	8427	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	RBBP4	ENSG00000162521.19	ENST00000414241.7:ENST00000527118.5:ENST00000373493.10:ENST00000401893.7:ENST00000524393.5:ENST00000492348.6:ENST00000526193.5:ENST00000373485.5:ENST00000477563.6:ENST00000458695.6:ENST00000445722.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	40	2	2.00228	2.292035	2.58179	0.0389732	0.024638	0.143072	0.131869
chr1	147978028	147978128	213297	0	+	0.44	(0.408,0.44]	chr1	23682	77	INTRON	INTRON	GPR89B	ENSG00000188092.15	ENST00000478307.5:ENST00000488165.5:ENST00000314163.12:ENST00000491975.5:ENST00000461786.5:ENST00000488603.5:ENST00000490955.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	40	2	2.00228	2.292035	2.58179	0.0389732	0.024638	0.143072	0.131869
chr14	67976097	67976197	5766937	0	+	0.44	(0.408,0.44]	chr14	547062	669	INTRON	INTRON	RAD51B	ENSG00000182185.19	ENST00000487861.5:ENST00000471583.6:ENST00000479335.5:ENST00000487270.5:ENST00000488612.5:ENST00000553595.5:ENST00000497460.5:ENST00000492236.5:ENST00000554244.5:ENST00000478014.5:ENST00000469165.6:ENST00000460526.5:ENST00000468382.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	40	2	2.00228	2.292035	2.58179	0.0389732	0.024638	0.143072	0.131869
chr2	219384957	219385050	1331732	0	-	0.419355	(0.408,0.44]	chr2	139640	5	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	DNPEP	ENSG00000123992.20	ENST00000273075.9:ENST00000520694.6:ENST00000523282.5:ENST00000373972.5:ENST00000373966.5:ENST00000373963.5:ENST00000457935.5:ENST00000429013.5:ENST00000521459.5:ENST00000460963.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	40	2	2.00228	2.292035	2.58179	0.0389732	0.024638	0.143072	0.131869
chr9	37143032	37143132	4117883	0	+	0.29	(0.28,0.32]	chr9	375372	157	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000322831.6:ENST00000461038.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	120	2	1.71173	2.29203	2.87233	0.0121526	0.0028269	0.0964034	0.0472361
chr19	11827466	11827566	7019034	0	+	0.34	(0.32,0.35]	chr19	697801	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	ZNF440	ENSG00000171295.13	ENST00000304060.10:ENST00000457526.1:ENST00000427505.5:ENST00000588954.5	protein_coding	protein_coding	protein_coding	protein_coding	3	48	2	2.18092	2.292	2.40308	0.0417732	0.0256608	0.161736	0.120491
chr7	105344060	105344160	3603457	0	-	0.36	(0.35,0.378]	chr7	336161	371	INTRON	INTRON	SRPK2	ENSG00000135250.17	ENST00000393651.8:ENST00000482897.5:ENST00000460391.5:ENST00000462282.5:ENST00000465112.5:ENST00000482862.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	69	2	1.99351	2.291985	2.59046	0.020841	0.00528327	0.111648	0.0656295
chr3	197121900	197121998	1901723	0	-	0.377551	(0.35,0.378]	chr3	190571	20	INTRON	INTRON	DLG1	ENSG00000075711.21	ENST00000667157.1:ENST00000346964.6:ENST00000656428.1:ENST00000663148.1:ENST00000655488.1:ENST00000357674.9:ENST00000671185.1:ENST00000658701.1:ENST00000667104.1:ENST00000661336.1:ENST00000669565.1:ENST00000670455.1:ENST00000656087.1:ENST00000670366.1:ENST00000653583.1:ENST00000653795.1:ENST00000671246.1:ENST00000661453.1:ENST00000665728.1:ENST00000664564.1:ENST00000653331.1:ENST00000660432.1:ENST00000660898.1:ENST00000657381.1:ENST00000659221.1:ENST00000654737.1:ENST00000669332.1:ENST00000659716.1:ENST00000660553.1:ENST00000664991.1:ENST00000419354.5:ENST00000661440.1:ENST00000667971.1:ENST00000670935.1:ENST00000668578.1:ENST00000666007.1:ENST00000661229.1:ENST00000660237.1:ENST00000657098.1:ENST00000661013.1:ENST00000436682.6:ENST00000452595.5:ENST00000662727.1:ENST00000422288.6:ENST00000448528.6:ENST00000443183.5:ENST00000656944.1:ENST00000392382.6:ENST00000450955.5:ENST00000658155.1:ENST00000669714.1:ENST00000654733.1:ENST00000469073.2:ENST00000419227.5:ENST00000392381.7:ENST00000471733.5:ENST00000419553.6:ENST00000447466.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	58	2	1.64283	2.29197	2.94111	0.034896	0.0104563	0.148998	0.0855102
chr11	66001166	66001247	4967960	0	-	0.604938	(0.57,1]	chr11	468380	3	INTRON	INTRON	EIF1AD	ENSG00000175376.9	ENST00000312234.6:ENST00000533544.6:ENST00000526451.5:ENST00000525767.5:ENST00000529964.5:ENST00000527249.5:ENST00000530462.5:ENST00000532707.5:ENST00000526449.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	21	2	1.91937	2.291875	2.66438	0.0468438	0.0171563	0.167716	0.104099
chr17	41782559	41782658	6769296	0	-	0.575758	(0.57,1]	chr17	666305	93	INTRON	INTRON	JUP	ENSG00000173801.17	ENST00000310706.9:ENST00000393930.5:ENST00000393931.8:ENST00000449889.5:ENST00000437187.5:ENST00000424457.5:ENST00000591690.5:ENST00000437369.5:ENST00000589036.1:ENST00000465293.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	21	2	1.91937	2.291875	2.66438	0.0468438	0.0171563	0.167716	0.104099
chr18	2671789	2671888	6865023	0	+	0.575758	(0.57,1]	chr18	679952	44	INTRON	INTRON	SMCHD1	ENSG00000101596.17	ENST00000320876.11:ENST00000688342.1:ENST00000684915.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	21	2	1.91937	2.291875	2.66438	0.0468438	0.0171563	0.167716	0.104099
chr20	17969141	17969241	7243211	0	+	0.6	(0.57,1]	chr20	735406	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	MGME1	ENSG00000125871.14	ENST00000377710.10:ENST00000377709.1:ENST00000377704.4	protein_coding	protein_coding	protein_coding	protein_coding	3	21	2	1.91937	2.291875	2.66438	0.0468438	0.0171563	0.167716	0.104099
chr7	100803360	100803460	3587560	0	-	0.69	(0.57,1]	chr7	334650	9	UTR3	UTR3:EXON_MRNA	EPHB4	ENSG00000196411.10	ENST00000358173.8:ENST00000616502.4:ENST00000360620.7:ENST00000487222.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	21	2	1.91937	2.291875	2.66438	0.0468438	0.0171563	0.167716	0.104099
chr1	32793814	32793912	415924	0	-	0.285714	(0.28,0.32]	chr1	50188	22	INTRON	INTRON	YARS1	ENSG00000134684.13	ENST00000373477.9:ENST00000676297.1:ENST00000674654.1:ENST00000674629.1:ENST00000675785.2:ENST00000481895.6:ENST00000616261.2:ENST00000466052.1:ENST00000470377.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	60	2	2.06884	2.29186	2.51488	0.0380957	0.0152581	0.141678	0.108569
chr8	123453411	123453511	3851760	0	+	0.42	(0.408,0.44]	chr8	354887	48	INTRON	INTRON	NTAQ1	ENSG00000156795.8	ENST00000650311.1:ENST00000523551.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	48	2	1.69172	2.291825	2.89193	0.0486032	0.00950364	0.153946	0.0863579
chr2	84438782	84438880	1168627	0	-	0.428571	(0.408,0.44]	chr2	124421	23	INTRON	INTRON	SUCLG1	ENSG00000163541.12	ENST00000393868.7:ENST00000651342.1:ENST00000488234.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	47	2	1.6306	2.29178	2.95296	0.0544158	0.00929354	0.182272	0.0817766
chr7	66923642	66923741	3326257	0	+	0.434343	(0.408,0.44]	chr7	309335	10	INTRON	INTRON	TMEM248	ENSG00000106609.16	ENST00000341567.8:ENST00000607045.5:ENST00000433271.6:ENST00000413593.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	47	2	1.6306	2.29178	2.95296	0.0544158	0.00929354	0.182272	0.0817766
chr6	4824998	4825098	2791348	0	+	0.45	(0.44,0.476]	chr6	263598	478	INTRON	INTRON	CDYL	ENSG00000153046.18	ENST00000328908.9:ENST00000491864.1:ENST00000440139.5:ENST00000483019.1:ENST00000397588.8:ENST00000472453.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	54	2	1.38039	2.291645	3.2029	0.0762718	0.00308681	0.195539	0.0510391
chr12	68629561	68629661	5161393	0	+	0.32	(0.28,0.32]	chr12	488585	43	INTRON	INTRON	RAP1B	ENSG00000127314.18	ENST00000460800.5:ENST00000393436.9:ENST00000250559.14:ENST00000425247.6:ENST00000501412.2:ENST00000450214.6:ENST00000463493.5:ENST00000537460.5:ENST00000341355.9:ENST00000538283.5:ENST00000541167.5:ENST00000422358.6:ENST00000489473.6:ENST00000545270.5:ENST00000538980.5:ENST00000543393.5:ENST00000542018.5:ENST00000540209.5:ENST00000378985.7:ENST00000453560.6:ENST00000534899.5:ENST00000542145.5:ENST00000539091.5:ENST00000535492.5:ENST00000540781.5:ENST00000485252.6:ENST00000538877.5:ENST00000541386.5:ENST00000543697.5:ENST00000545720.6:ENST00000541216.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	128	2	2.03106	2.29162	2.55218	0.0208123	5.71394e-4	0.111549	0.0217398
chr13	27251850	27251950	5459376	0	+	0.53	(0.515,0.57]	chr13	523083	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	RPL21	ENSG00000122026.11	ENST00000473558.5:ENST00000311549.11:ENST00000461690.5:ENST00000272274.8:ENST00000319826.8:ENST00000326092.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	54	2	2.06758	2.291595	2.51561	0.0140038	0.00635044	0.0959618	0.0723103
chr6	7190821	7190920	2799200	0	+	0.555556	(0.515,0.57]	chr6	263761	11	INTRON	INTRON	RREB1	ENSG00000124782.21	ENST00000379933.7:ENST00000471433.5:ENST00000379938.7:ENST00000349384.10:ENST00000334984.10:ENST00000475946.5:ENST00000483150.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	54	2	2.06758	2.291595	2.51561	0.0140038	0.00635044	0.0959618	0.0723103
chr7	155677208	155677308	3452222	0	+	0.38	(0.378,0.408]	chr7	322654	39	INTRON	INTRON	RBM33	ENSG00000184863.11	ENST00000287912.7:ENST00000401878.8:ENST00000392759.7:ENST00000307403.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	68	2	1.94681	2.29155	2.63629	0.0457723	0.001315	0.149888	0.0333932
chr1	223720328	223720428	320333	0	+	0.59	(0.57,1]	chr1	36860	21	INTRON	INTRON	CAPN2	ENSG00000162909.18	ENST00000433674.6:ENST00000434648.5:ENST00000295006.6	protein_coding	protein_coding	protein_coding	protein_coding	5	29	2	1.79898	2.291535	2.78409	0.0206524	0.0116033	0.122348	0.0889104
chr19	12943913	12943941	7022527	0	+	0.678571	(0.57,1]	chr19	698303	1	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CALR	ENSG00000179218.15	ENST00000316448.10:ENST00000586967.2:ENST00000586760.2:ENST00000680816.1:ENST00000588454.6:ENST00000586803.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	29	2	1.79898	2.291535	2.78409	0.0206524	0.0116033	0.122348	0.0889104
chr5	69239350	69239450	2380496	0	+	0.29	(0.28,0.32]	chr5	229271	35	INTRON	INTRON	CDK7	ENSG00000134058.12	ENST00000629350.2:ENST00000626796.2:ENST00000506563.5:ENST00000512687.5:ENST00000515391.5:ENST00000256443.8:ENST00000515180.5:ENST00000506789.5:ENST00000510106.5:ENST00000514676.5:ENST00000504147.5:ENST00000508726.5:ENST00000502604.5:ENST00000513629.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	49	2	2.1895	2.2914849999999998	2.39347	0.0504457	0.0227063	0.156383	0.124921
chr17	22201895	22201995	6579685	0	+	0.52	(0.515,0.57]	chr17	639568	183	INTRON	INTRON	UBBP4	ENSG00000263563.7	ENST00000648259.1:ENST00000688301.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	5	47	2	1.89462	2.291475	2.68833	0.0184931	0.0139002	0.108861	0.10247
chr1	35838975	35839075	70304	0	+	0.47	(0.44,0.476]	chr1	8994	26	INTRON	INTRON	AGO4	ENSG00000134698.11	ENST00000373210.4	protein_coding	protein_coding	protein_coding	protein_coding	4	52	2	2.13779	2.2914649999999996	2.44514	0.0264596	0.0087381	0.122506	0.0845538
chr7	131340278	131340378	3416566	0	+	0.47	(0.44,0.476]	chr7	319187	119	INTRON	INTRON	MKLN1	ENSG00000128585.18	ENST00000421797.6:ENST00000416992.6:ENST00000429546.5:ENST00000446815.5:ENST00000494286.5:ENST00000352689.11:ENST00000494785.5:ENST00000458153.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	52	2	2.13779	2.2914649999999996	2.44514	0.0264596	0.0087381	0.122506	0.0845538
chr3	149066849	149066948	1840797	0	-	0.30303	(0.28,0.32]	chr3	185163	16	INTRON	INTRON	HLTF	ENSG00000071794.16	ENST00000310053.10:ENST00000465259.5:ENST00000392912.6:ENST00000494055.5	protein_coding	protein_coding	protein_coding	protein_coding	7	82	2	1.31424	2.29137	3.2685	0.0580847	0.00432734	0.188651	0.0579331
chr5	104289475	104289575	2443310	0	+	0.46	(0.44,0.476]	chr5	234410	1842	INTRON	INTRON	LINC02163	ENSG00000251026.2	ENST00000662211.1:ENST00000666145.1	lncRNA	lncRNA	lncRNA	lncRNA	9	108	2	1.60853	2.29136	2.97419	0.020211	3.31666e-4	0.121301	0.0168836
chr17	67364845	67364942	6826130	0	-	0.56701	(0.515,0.57]	chr17	674633	16	INTRON	INTRON	PSMD12	ENSG00000197170.10	ENST00000356126.8:ENST00000357146.4:ENST00000584008.5:ENST00000584289.5:ENST00000581618.1:ENST00000579365.5:ENST00000578015.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	84	2	1.73535	2.2913550000000003	2.84736	0.0165373	4.72534e-4	0.110511	0.0201458
chr2	235537835	235537935	1041775	0	+	0.47	(0.44,0.476]	chr2	111222	129	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1:ENST00000402604.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	39	2	1.83899	2.2913550000000003	2.74372	0.0589734	0.0153007	0.167915	0.108569
chr7	128000664	128000763	3405912	0	+	0.474747	(0.44,0.476]	chr7	318188	27	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000486037.1:ENST00000484767.5:ENST00000470723.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	39	2	1.83899	2.2913550000000003	2.74372	0.0589734	0.0153007	0.167915	0.108569
chr2	32574258	32574357	733038	0	+	0.484848	(0.476,0.515]	chr2	84650	80	INTRON	INTRON	BIRC6	ENSG00000115760.15	ENST00000421745.7:ENST00000471232.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	39	2	2.26034	2.29132	2.3223	0.0519312	0.0166235	0.159306	0.110511
chr4	18020666	18020734	2118289	0	-	0.485294	(0.476,0.515]	chr4	209160	3	UTR5	UTR5:EXON_MRNA:INTRON	LCORL	ENSG00000178177.17	ENST00000635767.2:ENST00000326877.8:ENST00000675131.1:ENST00000675143.1:ENST00000637787.1:ENST00000675605.1:ENST00000510451.5:ENST00000675927.1:ENST00000382224.5:ENST00000382226.5:ENST00000676061.1:ENST00000674942.1:ENST00000512376.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	39	2	2.26034	2.29132	2.3223	0.0519312	0.0166235	0.159306	0.110511
chr1	155927556	155927656	564793	0	-	0.49	(0.476,0.515]	chr1	67493	4	SS3_PROX	SS3_PROX:INTRON	KHDC4	ENSG00000132680.11	ENST00000368321.8:ENST00000368320.7:ENST00000368319.3:ENST00000482337.5:ENST00000466713.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	39	2	1.92984	2.2912600000000003	2.65268	0.0466474	0.0201975	0.151522	0.121243
chr7	76613493	76613593	3341003	0	+	0.48	(0.476,0.515]	chr7	311170	616	INTRON	INTRON	ENSG00000205485	ENSG00000205485.13	ENST00000418663.5:ENST00000450661.1:ENST00000423084.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	3	39	2	1.92984	2.2912600000000003	2.65268	0.0466474	0.0201975	0.151522	0.121243
chr15	87689774	87689874	6256452	0	-	0.35	(0.32,0.35]	chr15	596826	1464	INTRON	INTRON	ENSG00000259560	ENSG00000259560.2	ENST00000665121.1:ENST00000560439.1	lncRNA	lncRNA	lncRNA	lncRNA	4	62	2	2.19668	2.29125	2.38582	0.021398	0.0138529	0.123719	0.0953077
chr22	21485613	21485711	7559942	0	-	0.489796	(0.476,0.515]	chr22	773297	11	INTRON	INTRON	PI4KAP2	ENSG00000183506.17	ENST00000462560.6:ENST00000450651.5:ENST00000360806.9:ENST00000494740.5:ENST00000467443.5:ENST00000480319.5:ENST00000479693.1	transcribed_unitary_pseudogene	retained_intron	transcribed_unitary_pseudogene	retained_intron:processed_transcript:transcribed_unitary_pseudogene	5	63	2	2.09697	2.29124	2.48551	0.0136924	0.00756632	0.0949306	0.0773151
chr4	145128060	145128158	2064172	0	+	0.316327	(0.28,0.32]	chr4	204274	6	UTR3	UTR3:EXON_MRNA	ABCE1	ENSG00000164163.11	ENST00000296577.9	protein_coding	protein_coding	protein_coding	protein_coding	3	49	2	1.90263	2.29119	2.67975	0.0503272	0.0252505	0.17488	0.12011
chr5	28855235	28855335	2330302	0	+	0.32	(0.28,0.32]	chr5	225135	447	INTRON	INTRON	LINC02109	ENSG00000259786.7	ENST00000658190.1	lncRNA	lncRNA	lncRNA	lncRNA	3	49	2	1.90263	2.29119	2.67975	0.0503272	0.0252505	0.17488	0.12011
chr6	34879172	34879263	3086241	0	-	0.417582	(0.408,0.44]	chr6	288704	6	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TAF11	ENSG00000064995.19	ENST00000361288.9:ENST00000650109.1:ENST00000693593.1:ENST00000420584.3:ENST00000689560.1:ENST00000685682.1:ENST00000691871.1:ENST00000686190.1:ENST00000687970.1:ENST00000688059.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	87	2	1.84516	2.29113	2.7371	0.0193431	7.83328e-4	0.108861	0.0257505
chr1	35969351	35969450	71528	0	+	0.313131	(0.28,0.32]	chr1	9144	19	INTRON	INTRON	AGO3	ENSG00000126070.20	ENST00000324350.9:ENST00000397828.3:ENST00000634486.1:ENST00000373191.9:ENST00000246314.10:ENST00000491443.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	59	2	1.90249	2.29112	2.67975	0.0261803	0.0252505	0.133676	0.12011
chr1	100430175	100430274	173408	0	+	0.30303	(0.28,0.32]	chr1	18830	55	INTRON	INTRON	CDC14A	ENSG00000079335.20	ENST00000646665.1:ENST00000644844.1:ENST00000635056.2:ENST00000647005.1:ENST00000647203.1:ENST00000644676.1:ENST00000361544.11:ENST00000370124.8:ENST00000336454.5:ENST00000644813.1:ENST00000455467.6:ENST00000646563.1:ENST00000469387.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	59	2	1.90249	2.29112	2.67975	0.0261803	0.0252505	0.133676	0.12011
chr2	113903290	113903390	854376	0	+	0.31	(0.28,0.32]	chr2	95895	122	INTRON	INTRON	ACTR3	ENSG00000115091.12	ENST00000443297.5:ENST00000263238.7:ENST00000415792.5:ENST00000446821.5:ENST00000535589.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	59	2	1.90249	2.29112	2.67975	0.0261803	0.0252505	0.133676	0.12011
chr8	11833451	11833549	3702843	0	+	0.306122	(0.28,0.32]	chr8	343531	14	INTRON	INTRON	FDFT1	ENSG00000079459.13	ENST00000538689.4:ENST00000615631.4:ENST00000618539.4:ENST00000623368.3:ENST00000446331.6:ENST00000443614.6:ENST00000220584.9:ENST00000525607.5:ENST00000525900.5:ENST00000528812.5:ENST00000622850.2:ENST00000530664.5:ENST00000525954.5:ENST00000528643.5:ENST00000525777.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	59	2	1.90249	2.29112	2.67975	0.0261803	0.0252505	0.133676	0.12011
chr22	46912488	46912588	7536696	0	+	0.36	(0.35,0.378]	chr22	770607	3	SS5_PROX	SS5_PROX:INTRON	TBC1D22A	ENSG00000054611.14	ENST00000380995.5:ENST00000337137.9:ENST00000407381.7:ENST00000355704.7:ENST00000394449.6:ENST00000441162.5:ENST00000406733.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	42	2	2.04358	2.29107	2.53856	0.0329533	0.0326077	0.145171	0.133687
chr6	169694262	169694362	3267051	0	-	0.37	(0.35,0.378]	chr6	303254	4	SS5_PROX	SS5_PROX:INTRON	WDR27	ENSG00000184465.16	ENST00000448612.6:ENST00000648472.1:ENST00000423258.5:ENST00000647790.1:ENST00000647873.1:ENST00000649303.1:ENST00000647889.1:ENST00000648017.1:ENST00000650296.1:ENST00000546953.1:ENST00000649806.1:ENST00000474018.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	42	2	2.04358	2.29107	2.53856	0.0329533	0.0326077	0.145171	0.133687
chrX	151402135	151402235	7735159	0	+	0.36	(0.35,0.378]	chrX	791452	44	INTRON	INTRON	VMA21	ENSG00000160131.14	ENST00000477649.1:ENST00000370361.5:ENST00000330374.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	42	2	2.04358	2.29107	2.53856	0.0329533	0.0326077	0.145171	0.133687
chr16	21474336	21474434	6461091	0	-	0.408163	(0.378,0.408]	chr16	623337	7	INTRON	INTRON	SMG1P3	ENSG00000180747.15	ENST00000522480.5:ENST00000522841.6	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	6	75	2	1.56313	2.290995	3.01886	0.0474151	7.99379e-4	0.153019	0.0258804
chr7	12379905	12379985	3485193	0	-	0.525	(0.515,0.57]	chr7	325940	4	SS3_PROX	SS3_PROX:INTRON	VWDE	ENSG00000146530.15	ENST00000275358.8:ENST00000452576.6:ENST00000521169.5:ENST00000326715.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	47	2	1.94945	2.290975	2.6325	0.0414068	0.00439001	0.161557	0.0585064
chr19	2272051	2272149	6997100	0	+	0.632653	(0.57,1]	chr19	693662	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	OAZ1	ENSG00000104904.12	ENST00000590943.6:ENST00000592787.2:ENST00000602676.6:ENST00000581150.6:ENST00000582888.8:ENST00000593012.1:ENST00000588673.3:ENST00000586054.2:ENST00000589361.2:ENST00000592727.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	19	114	2	2.27517	2.29094	2.30671	4.53633e-4	5.61971e-5	0.0196892	0.00613846
chr2	200857259	200857351	1310035	0	-	0.413043	(0.408,0.44]	chr2	137028	4	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CLK1	ENSG00000013441.17	ENST00000321356.9:ENST00000461981.5:ENST00000473565.5:ENST00000432425.5:ENST00000409769.6:ENST00000409403.6:ENST00000434813.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	63	2	2.26617	2.2909100000000002	2.31565	0.0154718	0.00649402	0.100909	0.0734343
chr9	123151450	123151549	4339291	0	-	0.30303	(0.28,0.32]	chr9	398880	32	INTRON	INTRON	STRBP	ENSG00000165209.19	ENST00000348403.10:ENST00000447404.6:ENST00000360998.3:ENST00000407982.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	62	2	2.25298	2.290845	2.32871	0.0581621	0.00791652	0.167723	0.0797304
chr8	51854867	51854967	3946149	0	-	0.52	(0.515,0.57]	chr8	362026	44	INTRON	INTRON	PCMTD1	ENSG00000168300.14	ENST00000544451.2:ENST00000360540.9:ENST00000522514.6:ENST00000519559.1:ENST00000519975.1:ENST00000521344.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	55	2	2.08547	2.2907349999999997	2.496	0.0289426	0.00225531	0.1274	0.0436331
chr3	15047383	15047483	1372795	0	+	0.41	(0.408,0.44]	chr3	144690	45	UTR3	UTR3:EXON_MRNA:INTRON	NR2C2	ENSG00000177463.16	ENST00000425241.6:ENST00000617312.4:ENST00000439011.5:ENST00000413194.1	protein_coding	protein_coding	protein_coding	protein_coding	6	72	2	1.96973	2.290715	2.6117	0.0108773	0.00555224	0.0923273	0.0648867
chr11	33157003	33157103	4940935	0	-	0.43	(0.408,0.44]	chr11	462883	2	SS3_PROX	SS3_PROX:INTRON	CSTF3	ENSG00000176102.13	ENST00000323959.9:ENST00000524827.6:ENST00000526480.1:ENST00000438862.6:ENST00000431742.2:ENST00000524556.1:ENST00000524775.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	60	2	1.62843	2.290695	2.95296	0.025242	0.00929354	0.133676	0.0817766
chr2	241090849	241090949	1347024	0	-	0.4	(0.378,0.408]	chr2	141311	4	SS3_PROX	SS3_PROX:INTRON	MTERF4	ENSG00000122085.17	ENST00000464344.6:ENST00000496878.5:ENST00000241527.10:ENST00000614476.4:ENST00000488567.5:ENST00000455202.6:ENST00000480298.5:ENST00000476564.5:ENST00000449133.1:ENST00000495694.5:ENST00000479205.5:ENST00000493169.1:ENST00000414146.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	41	2	2.2259	2.290585	2.35527	0.0662381	0.0121511	0.181924	0.0963966
chr8	102300351	102300451	4011606	0	-	0.38	(0.378,0.408]	chr8	367130	2	SS3_PROX	SS3_PROX:INTRON	UBR5	ENSG00000104517.13	ENST00000520539.6:ENST00000220959.8:ENST00000521922.5:ENST00000520898.5:ENST00000519365.1	protein_coding	protein_coding	protein_coding	protein_coding	3	41	2	2.2259	2.290585	2.35527	0.0662381	0.0121511	0.181924	0.0963966
chr20	62281254	62281343	7298630	0	+	0.606742	(0.57,1]	chr20	742459	2	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	OSBPL2	ENSG00000130703.17	ENST00000439951.6:ENST00000644535.1:ENST00000358053.3:ENST00000313733.9:ENST00000645520.1:ENST00000642932.1:ENST00000642516.1:ENST00000643174.1:ENST00000644775.1:ENST00000645442.1:ENST00000646968.1:ENST00000646834.1:ENST00000643412.1:ENST00000645426.1:ENST00000644702.1:ENST00000644189.1:ENST00000643981.1:ENST00000642714.1:ENST00000618198.4:ENST00000620616.1:ENST00000621075.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	45	2	2.23972	2.290535	2.34135	0.00670296	0.00191867	0.0707084	0.0405205
chr10	69393290	69393387	4446641	0	+	0.453608	(0.44,0.476]	chr10	410309	6	INTRON	INTRON	HK1	ENSG00000156515.24	ENST00000436817.6:ENST00000360289.6:ENST00000448642.6:ENST00000643399.2:ENST00000298649.8:ENST00000359426.7:ENST00000493591.6:ENST00000470050.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	52	2	2.08277	2.2904999999999998	2.49823	0.0309998	0.00718224	0.13151	0.0756118
chr10	63495655	63495755	4635690	0	-	0.56	(0.515,0.57]	chr10	426242	298	INTRON	INTRON	JMJD1C	ENSG00000171988.20	ENST00000633035.1	protein_coding	processed_transcript	protein_coding	processed_transcript	4	40	2	1.81744	2.29049	2.76354	0.031028	0.0147344	0.143457	0.0983813
chrX	123602851	123602951	7877705	0	-	0.57	(0.515,0.57]	chrX	802388	24	UTR3	UTR3:EXON_MRNA:INTRON	THOC2	ENSG00000125676.20	ENST00000448128.5:ENST00000245838.13:ENST00000441692.5:ENST00000492203.1:ENST00000497887.5:ENST00000618150.4:ENST00000432353.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	40	2	1.81744	2.29049	2.76354	0.031028	0.0147344	0.143457	0.0983813
chr6	104983553	104983652	2930116	0	+	0.484848	(0.476,0.515]	chr6	276110	249	INTRON	INTRON	LIN28B	ENSG00000187772.8	ENST00000635857.1:ENST00000637759.1:ENST00000345080.5	protein_coding	protein_coding	protein_coding	protein_coding	6	75	2	2.05714	2.29047	2.5238	0.0156961	0.00218334	0.101453	0.0435144
chr4	169595902	169596001	2296995	0	-	0.353535	(0.35,0.378]	chr4	222273	47	INTRON	INTRON	NEK1	ENSG00000137601.18	ENST00000687054.1:ENST00000507142.6:ENST00000686697.1:ENST00000688934.1:ENST00000685111.1:ENST00000687528.1:ENST00000687643.1:ENST00000439128.6:ENST00000511633.5:ENST00000510533.5:ENST00000512193.5:ENST00000693604.1:ENST00000692450.1:ENST00000687219.1:ENST00000693085.1:ENST00000509912.5:ENST00000690631.1:ENST00000688487.1:ENST00000688653.1:ENST00000692868.1:ENST00000692218.1:ENST00000505119.2:ENST00000510108.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	108	2	2.13131	2.29046	2.44961	0.00741515	0.0014359	0.0744307	0.0347139
chr1	112658126	112658225	186719	0	+	0.323232	(0.32,0.35]	chr1	20663	31	INTRON	INTRON	CAPZA1	ENSG00000116489.13	ENST00000476936.5:ENST00000263168.4:ENST00000498626.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	127	2	2.19151	2.290435	2.38936	0.0114722	6.8675e-4	0.0888882	0.0238954
chr5	66030730	66030829	2371906	0	+	0.454545	(0.44,0.476]	chr5	228560	20	INTRON	INTRON	ERBIN	ENSG00000112851.15	ENST00000380943.6:ENST00000416865.6:ENST00000380935.5:ENST00000284037.10:ENST00000380938.6:ENST00000511297.5:ENST00000506030.5:ENST00000508515.1	protein_coding	protein_coding	protein_coding	protein_coding	4	52	2	2.19078	2.290405	2.39003	0.0226089	0.0106488	0.117489	0.0915714
chr2	241340341	241340439	1053874	0	+	0.316327	(0.28,0.32]	chr2	112247	22	INTRON	INTRON	SEPTIN2	ENSG00000168385.18	ENST00000391973.6:ENST00000428282.5:ENST00000360051.7:ENST00000616972.4:ENST00000401990.5:ENST00000407971.5:ENST00000494824.5:ENST00000466211.5:ENST00000391971.7:ENST00000402092.6:ENST00000464128.5:ENST00000484167.5:ENST00000421717.1:ENST00000481500.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	92	2	1.57779	2.29035	3.00291	0.0502605	0.00110829	0.156383	0.0305035
chr6	111005252	111005352	2939537	0	+	0.33	(0.32,0.35]	chr6	276871	51	INTRON	INTRON	RPF2	ENSG00000197498.13	ENST00000368864.8:ENST00000441448.7:ENST00000607388.1:ENST00000425871.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	61	2	1.99307	2.2903000000000002	2.58753	0.04271	0.00560122	0.148082	0.0678837
chr2	87479027	87479126	826161	0	+	0.525253	(0.515,0.57]	chr2	92427	4	INTRON	INTRON	CYTOR:ENSG00000284879	ENSG00000222041.12:ENSG00000284879.1	ENST00000642796.1:ENST00000643589.1:ENST00000642451.1:ENST00000646386.1:ENST00000644478.1:ENST00000409139.6:ENST00000331944.10:ENST00000644125.1:ENST00000643743.1:ENST00000644577.1:ENST00000643276.1:ENST00000409898.2:ENST00000419680.6:ENST00000644976.1:ENST00000643070.1:ENST00000646855.1:ENST00000414584.1:ENST00000455131.5:ENST00000646636.1:ENST00000642293.1:ENST00000423846.5:ENST00000644040.1:ENST00000645138.1:ENST00000437561.2:ENST00000629257.1:ENST00000414030.6	lncRNA	lncRNA	lncRNA	lncRNA	3	34	2	2.01737	2.290215	2.56306	0.0352218	0.0247751	0.137535	0.131869
chr22	19466972	19467072	7554772	0	-	0.54	(0.515,0.57]	chr22	772375	18	EXON_MRNA	EXON_MRNA:INTRON	UFD1	ENSG00000070010.19	ENST00000263202.15:ENST00000399523.5:ENST00000459854.5:ENST00000466373.1:ENST00000447868.5:ENST00000421968.6:ENST00000484101.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	34	2	2.01737	2.290215	2.56306	0.0352218	0.0247751	0.137535	0.131869
chr7	73685365	73685461	3331584	0	+	0.5625	(0.515,0.57]	chr7	309873	10	INTRON	INTRON	BUD23	ENSG00000071462.12	ENST00000464615.1:ENST00000421304.5:ENST00000432522.5:ENST00000421744.5:ENST00000265758.7:ENST00000496153.5:ENST00000478670.5:ENST00000441822.5:ENST00000436944.5:ENST00000428163.5:ENST00000463307.5:ENST00000423497.5:ENST00000430270.5:ENST00000487006.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	34	2	2.01737	2.290215	2.56306	0.0352218	0.0247751	0.137535	0.131869
chr16	21441215	21441314	6460727	0	-	0.50505	(0.476,0.515]	chr16	623226	6	INTRON	INTRON	NPIPB3	ENSG00000169246.16	ENST00000545358.5:ENST00000543368.1:ENST00000544154.1	protein_coding	retained_intron	protein_coding	retained_intron:processed_transcript	9	110	2	2.07252	2.2901499999999997	2.50778	0.00436163	0.00128608	0.060356	0.0328018
chr2	177222371	177222471	926019	0	+	0.38	(0.378,0.408]	chr2	101764	32	UTR3	UTR3:EXON_MRNA	HNRNPA3	ENSG00000170144.21	ENST00000679159.1:ENST00000678111.1:ENST00000678421.1:ENST00000677863.1:ENST00000676681.1:ENST00000676629.1:ENST00000677337.1:ENST00000676488.1:ENST00000677043.1:ENST00000676874.1:ENST00000676762.1:ENST00000411529.6:ENST00000676736.1:ENST00000483137.2:ENST00000677508.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	66	803	2	2.23975	2.290115	2.34048	9.74225e-5	1.25362e-5	0.00889474	0.00264407
chr3	33810297	33810396	1394496	0	+	0.40404	(0.378,0.408]	chr3	146021	104	INTRON	INTRON	PDCD6IP	ENSG00000170248.15	ENST00000457054.6:ENST00000648706.1:ENST00000435909.5:ENST00000430877.5:ENST00000413073.1:ENST00000307296.8:ENST00000477798.5:ENST00000498147.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	92	2	2.02416	2.290115	2.55607	0.00704647	0.00361901	0.0718189	0.0554656
chr2	32002087	32002187	1091032	0	-	0.35	(0.32,0.35]	chr2	116913	389	INTRON	INTRON	MEMO1:DPY30	ENSG00000162959.14:ENSG00000162961.14	ENST00000295065.9:ENST00000446765.5:ENST00000404530.6:ENST00000490459.5:ENST00000426310.6:ENST00000413686.1:ENST00000407893.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	61	2	2.22429	2.2901	2.35591	0.0226421	0.0128129	0.117557	0.0990564
chr5	139308827	139308920	2499533	0	+	0.236559	[0,0.28]	chr5	238921	1	INTRON	INTRON	MATR3	ENSG00000280987.4:ENSG00000015479.20	ENST00000509990.5:ENST00000506147.5:ENST00000512107.5:ENST00000361059.7:ENST00000394800.6:ENST00000502929.5:ENST00000504203.5:ENST00000509644.5:ENST00000512876.5:ENST00000513678.5:ENST00000513121.1:ENST00000504045.5:ENST00000504311.5:ENST00000502499.5:ENST00000510056.5:ENST00000511249.5:ENST00000394805.8:ENST00000507860.1:ENST00000509918.5:ENST00000503811.5:ENST00000511978.5:ENST00000618441.5:ENST00000514528.5:ENST00000504643.5:ENST00000515833.2:ENST00000514402.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	105	2	1.60395	2.290055	2.97616	0.0203292	0.0128425	0.121586	0.0926667
chr12	123355726	123355825	5445117	0	-	0.434343	(0.408,0.44]	chr12	521118	49	INTRON	INTRON	SBNO1	ENSG00000139697.14	ENST00000602398.3:ENST00000267176.8	protein_coding	protein_coding	protein_coding	protein_coding	6	76	2	2.00629	2.2899700000000003	2.57365	0.0189661	0.00172241	0.108861	0.0383099
chr19	28513526	28513625	7166230	0	-	0.30303	(0.28,0.32]	chr19	724189	453	INTRON	INTRON	ENSG00000283403:ENSG00000267243	ENSG00000283403.1:ENSG00000267243.6	ENST00000592347.5:ENST00000593065.5	lncRNA	lncRNA	lncRNA	lncRNA	13	197	2	2.2425	2.289935	2.33737	0.00256382	8.40152e-4	0.0450785	0.0263691
chr19	58547047	58547134	7108047	0	+	0.574713	(0.57,1]	chr19	713558	3	SS3_PROX	SS3_PROX:INTRON	TRIM28	ENSG00000130726.12	ENST00000253024.10:ENST00000593582.5:ENST00000594806.5:ENST00000341753.10	protein_coding	protein_coding	protein_coding	protein_coding	6	32	2	1.3512	2.28988	3.22856	0.0618425	0.00205928	0.174429	0.0420839
chr3	196499974	196500073	1899985	0	-	0.484848	(0.476,0.515]	chr3	190261	109	INTRON	INTRON	RNF168	ENSG00000163961.4	ENST00000318037.3:ENST00000437070.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	68	2	1.79693	2.28987	2.78281	0.0649782	6.29551e-4	0.179417	0.0226349
chr19	15302444	15302544	7147105	0	-	0.51	(0.476,0.515]	chr19	721965	221	INTRON	INTRON	BRD4	ENSG00000141867.19	ENST00000679869.1:ENST00000360016.9:ENST00000594841.5:ENST00000597315.5:ENST00000601941.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	98	2	2.20678	2.289865	2.37295	0.00484957	0.00193884	0.0605773	0.0409025
chr1	70226839	70226937	142646	0	+	0.326531	(0.32,0.35]	chr1	15978	37	INTRON	INTRON	SRSF11	ENSG00000116754.14	ENST00000370951.5:ENST00000463877.1:ENST00000687381.1:ENST00000370950.7:ENST00000475204.5:ENST00000370949.2:ENST00000395136.7:ENST00000473950.5:ENST00000469170.5:ENST00000486667.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	12	132	2	1.60591	2.28985	2.97379	0.0100167	0.00164543	0.0880217	0.0369207
chr12	123343172	123343271	5444986	0	-	0.414141	(0.408,0.44]	chr12	521097	17	INTRON	INTRON	SBNO1	ENSG00000139697.14	ENST00000602398.3:ENST00000267176.8:ENST00000420886.6	protein_coding	protein_coding	protein_coding	protein_coding	3	40	2	2.18807	2.289845	2.39162	0.0708044	0.0105837	0.184528	0.0911864
chr16	75353685	75353784	6528490	0	-	0.40404	(0.378,0.408]	chr16	632300	473	INTRON	INTRON	CFDP1	ENSG00000153774.9	ENST00000283882.4:ENST00000564793.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	65	2	2.22859	2.28981	2.35103	0.014158	0.00763308	0.0959618	0.0777238
chr7	152298170	152298270	3679904	0	-	0.36	(0.35,0.378]	chr7	341623	114	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000684262.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	58	2	1.81767	2.289795	2.76192	0.0640429	0.00265021	0.177882	0.0474328
chr6	143444638	143444721	3242309	0	-	0.240964	[0,0.28]	chr6	301156	2	EXON_LNCRNA	EXON_LNCRNA:INTRON	ADAT2	ENSG00000189007.16	ENST00000237283.9:ENST00000367593.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	111	2	2.20536	2.2896850000000004	2.37401	0.0138742	0.00568456	0.0954405	0.0678837
chr1	206688601	206688701	302172	0	+	0.35	(0.32,0.35]	chr1	34692	27	INTRON	INTRON	MAPKAPK2	ENSG00000162889.11	ENST00000367103.4:ENST00000294981.8	protein_coding	protein_coding	protein_coding	protein_coding	7	104	2	2.24233	2.2896549999999998	2.33698	0.00536261	0.00525416	0.0663076	0.0633773
chr8	9776932	9777031	3701754	0	+	0.373737	(0.35,0.378]	chr8	343368	3	UTR3	UTR3:EXON_MRNA	TNKS	ENSG00000173273.16	ENST00000310430.11:ENST00000517770.1	protein_coding	protein_coding	protein_coding	protein_coding	4	57	2	2.23651	2.289645	2.34278	0.020879	0.0129593	0.111766	0.0991015
chr1	100391923	100392023	173024	0	+	0.4	(0.378,0.408]	chr1	18824	7	INTRON	INTRON	CDC14A	ENSG00000079335.20	ENST00000646665.1:ENST00000644844.1:ENST00000635056.2:ENST00000647005.1:ENST00000647203.1:ENST00000644676.1:ENST00000361544.11:ENST00000370124.8:ENST00000336454.5:ENST00000644813.1:ENST00000455467.6:ENST00000646563.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	41	2	1.94681	2.28964	2.63247	0.0457723	0.0215745	0.149888	0.123836
chr3	48185561	48185652	1687808	0	-	0.406593	(0.378,0.408]	chr3	172354	5	INTRON	INTRON	CDC25A	ENSG00000164045.12	ENST00000302506.8:ENST00000351231.7:ENST00000443342.5:ENST00000437972.1	protein_coding	protein_coding	protein_coding	protein_coding	3	41	2	1.94681	2.28964	2.63247	0.0457723	0.0215745	0.149888	0.123836
chr17	59911305	59911403	6643947	0	+	0.377551	(0.35,0.378]	chr17	648809	3	INTRON	INTRON	RPS6KB1	ENSG00000108443.14	ENST00000393021.7:ENST00000472940.5:ENST00000225577.9:ENST00000477179.5:ENST00000443572.6:ENST00000489824.1:ENST00000406116.7:ENST00000592726.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	42	2	2.10859	2.28962	2.47065	0.0386172	0.0272722	0.142656	0.136494
chr21	31697050	31697150	7437471	0	-	0.33	(0.32,0.35]	chr21	758654	3	SS3_PROX	SS3_PROX:INTRON	SCAF4	ENSG00000156304.15	ENST00000286835.12:ENST00000399804.5:ENST00000434667.3:ENST00000467731.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	54	2	1.78201	2.28954	2.79707	0.0365003	0.0170923	0.153759	0.104099
chr2	15486917	15487015	1072415	0	-	0.326531	(0.32,0.35]	chr2	114423	32	INTRON	INTRON	NBAS	ENSG00000151779.13	ENST00000281513.10:ENST00000427792.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	62	2	1.49965	2.2895	3.07935	0.0542985	0.00724137	0.182243	0.0729826
chr2	61459068	61459167	1130437	0	-	0.343434	(0.32,0.35]	chr2	121499	379	INTRON	INTRON	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000453133.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	62	2	1.49965	2.2895	3.07935	0.0542985	0.00724137	0.182243	0.0729826
chr17	42256024	42256123	6772021	0	-	0.353535	(0.35,0.378]	chr17	666964	235	INTRON	INTRON	STAT5B	ENSG00000173757.10	ENST00000293328.8:ENST00000468312.1:ENST00000415845.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	42	2	1.9755	2.289455	2.60341	0.0398617	0.0275785	0.161534	0.123904
chr22	25464172	25464272	7489301	0	+	0.36	(0.35,0.378]	chr22	764216	26	INTRON	INTRON	CRYBB2P1	ENSG00000100058.13	ENST00000686640.1:ENST00000509460.3:ENST00000354451.6	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	3	42	2	1.9755	2.289455	2.60341	0.0398617	0.0275785	0.161534	0.123904
chr19	34401323	34401422	7052870	0	+	0.474747	(0.44,0.476]	chr19	703434	14	UTR3	UTR3:EXON_MRNA	GPI	ENSG00000105220.17	ENST00000415930.8:ENST00000356487.11	protein_coding	protein_coding	protein_coding	protein_coding	32	406	2	2.10195	2.289345	2.47674	3.95463e-4	3.40039e-5	0.0178616	0.00492199
chr19	43591826	43591925	7187475	0	-	0.363636	(0.35,0.378]	chr19	727431	76	UTR3	UTR3:EXON_MRNA:INTRON	IRGQ	ENSG00000167378.10	ENST00000422989.6:ENST00000602269.2:ENST00000601520.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	120	2	2.27669	2.28932	2.30195	0.00377584	0.00179366	0.0540736	0.0392772
chr1	21778060	21778160	396819	0	-	0.51	(0.476,0.515]	chr1	47345	199	INTRON	INTRON	USP48	ENSG00000090686.16	ENST00000400301.5:ENST00000308271.14:ENST00000529637.5:ENST00000421625.6:ENST00000527823.5:ENST00000532737.1:ENST00000489108.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	117	2	2.28112	2.289315	2.29751	0.00700958	6.00408e-4	0.0718189	0.0223465
chr18	23468222	23468320	6883681	0	+	0.244898	[0,0.28]	chr18	682196	3	INTRON	INTRON	RIOK3	ENSG00000101782.15	ENST00000339486.8:ENST00000581585.5:ENST00000581302.5:ENST00000577501.5:ENST00000584130.1:ENST00000581339.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	127	2	1.92652	2.289285	2.65205	0.0204624	0.00186389	0.110999	0.0399675
chr9	72147155	72147255	4141240	0	+	0.36	(0.35,0.378]	chr9	377405	320	INTRON	INTRON	GDA	ENSG00000119125.17	ENST00000545168.5	protein_coding	protein_coding	protein_coding	protein_coding	4	58	2	2.17079	2.289245	2.4077	0.0225978	0.0122026	0.124921	0.0910127
chr15	67193693	67193791	6053150	0	+	0.255102	[0,0.28]	chr15	576343	33	UTR3	UTR3:EXON_MRNA	SMAD3	ENSG00000166949.17	ENST00000327367.9:ENST00000679624.1:ENST00000681239.1	protein_coding	protein_coding	protein_coding	protein_coding	6	105	2	1.92964	2.289205	2.64877	0.0157154	0.00757778	0.109464	0.0749063
chr12	132580061	132580158	5251714	0	+	0.402062	(0.378,0.408]	chr12	499518	28	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1:ENST00000542306.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	76	2	1.71374	2.28919	2.86464	0.0274158	0.00215581	0.136498	0.0417866
chr14	21263377	21263474	5835107	0	-	0.381443	(0.378,0.408]	chr14	554468	9	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HNRNPC	ENSG00000092199.19	ENST00000336053.10:ENST00000553300.6:ENST00000554969.5:ENST00000556142.5:ENST00000554455.5:ENST00000430246.6:ENST00000553753.5:ENST00000555309.5:ENST00000555914.5:ENST00000557442.5:ENST00000556628.5:ENST00000556513.5:ENST00000555883.5:ENST00000557201.5:ENST00000420743.6:ENST00000554539.5:ENST00000554383.5:ENST00000555215.5:ENST00000555137.5:ENST00000554891.5:ENST00000556226.5:ENST00000555176.5:ENST00000553614.5:ENST00000557336.1:ENST00000557768.1:ENST00000557033.1:ENST00000555127.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	76	2	1.71374	2.28919	2.86464	0.0274158	0.00215581	0.136498	0.0417866
chr8	123077110	123077171	3850271	0	+	0.311475	(0.28,0.32]	chr8	354662	1	CDS	CDS:UTR5:EXON_MRNA:INTRON	TBC1D31	ENSG00000156787.17	ENST00000520368.5:ENST00000519418.5:ENST00000287380.6:ENST00000522420.5:ENST00000327098.9:ENST00000518099.5:ENST00000521676.5:ENST00000524307.5:ENST00000522276.1:ENST00000518684.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	99	2	1.76048	2.289185	2.81789	0.0450149	7.16126e-4	0.149888	0.0244108
chr20	35707477	35707570	7336186	0	-	0.27957	[0,0.28]	chr20	747405	4	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RBM39	ENSG00000131051.24	ENST00000253363.11:ENST00000639702.1:ENST00000656873.1:ENST00000463004.5:ENST00000361162.10:ENST00000461283.5:ENST00000403542.6:ENST00000338163.10:ENST00000528062.7:ENST00000429968.5:ENST00000444878.5:ENST00000665058.1:ENST00000476806.5:ENST00000495293.5:ENST00000492779.5:ENST00000482563.1:ENST00000465158.5:ENST00000448303.5:ENST00000470563.5:ENST00000615771.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	111	2	2.06132	2.289145	2.51697	0.0408268	0.00156649	0.1451	0.0365592
chr1	219179926	219180025	318438	0	+	0.323232	(0.32,0.35]	chr1	36451	1	INTRON	INTRON	LYPLAL1	ENSG00000143353.12	ENST00000460522.5:ENST00000366927.3:ENST00000496776.5:ENST00000366928.10:ENST00000477938.5:ENST00000463964.5:ENST00000483635.5:ENST00000474379.5:ENST00000469590.5:ENST00000478794.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	133	2	1.61796	2.2891250000000003	2.96029	0.0201651	3.05651e-4	0.109913	0.0156022
chr1	65434615	65434714	137330	0	+	0.414141	(0.408,0.44]	chr1	15494	28	UTR3	UTR3:EXON_MRNA:INTRON	LEPR:LEPROT	ENSG00000116678.20:ENSG00000213625.9	ENST00000371060.7:ENST00000371059.7:ENST00000349533.11:ENST00000371065.9:ENST00000613538.1	protein_coding	protein_coding	protein_coding	protein_coding	11	130	2	2.21565	2.289085	2.36252	0.00260554	9.25633e-4	0.0455058	0.0278442
chr1	44753833	44753933	92455	0	+	0.5	(0.476,0.515]	chr1	12282	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	KIF2C	ENSG00000142945.13	ENST00000452259.5:ENST00000493027.5:ENST00000372224.9:ENST00000455186.5:ENST00000372217.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	119	2	2.26392	2.2890800000000002	2.31424	0.00308038	0.0010935	0.0496438	0.0302914
chr15	50667543	50667643	6173090	0	-	0.5	(0.476,0.515]	chr15	588397	41	INTRON	INTRON	TRPM7:ENSG00000288645	ENSG00000092439.16:ENSG00000288645.1	ENST00000646667.1:ENST00000560955.5:ENST00000676296.1	protein_coding	protein_coding	protein_coding	protein_coding	4	52	2	1.99197	2.28906	2.58615	0.039572	0.00515536	0.143072	0.0650394
chr4	10113340	10113438	2107393	0	-	0.408163	(0.378,0.408]	chr4	208496	46	INTRON	INTRON	WDR1	ENSG00000071127.17	ENST00000499869.7:ENST00000382451.6:ENST00000382452.6:ENST00000502702.5:ENST00000508079.1:ENST00000505851.5:ENST00000514319.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	14	174	2	1.98359	2.2890449999999998	2.5945	0.0032533	1.78012e-4	0.0508595	0.0116383
chr4	48845151	48845249	1958359	0	+	0.408163	(0.378,0.408]	chr4	196232	21	INTRON	INTRON	OCIAD1	ENSG00000109180.15	ENST00000504654.5:ENST00000509122.5:ENST00000505922.6:ENST00000509664.5:ENST00000514981.5:ENST00000512981.5:ENST00000507210.5:ENST00000508996.5:ENST00000396448.6:ENST00000512236.5:ENST00000509164.5:ENST00000381473.7:ENST00000511102.5:ENST00000264312.12:ENST00000444354.6:ENST00000509963.5:ENST00000509246.5:ENST00000506801.5:ENST00000503016.5:ENST00000510824.5:ENST00000507546.5:ENST00000513641.5:ENST00000425583.6:ENST00000508293.5:ENST00000513391.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	40	2	2.04292	2.2889749999999998	2.53503	0.0326035	0.0319942	0.145164	0.13174
chr16	23839401	23839501	6323792	0	+	0.43	(0.408,0.44]	chr16	605693	16	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000498058.1:ENST00000645517.1:ENST00000498739.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	95	2	1.38717	2.28891	3.19065	0.0391815	3.2984e-4	0.143072	0.0161352
chr13	27163690	27163790	5566485	0	-	0.42	(0.408,0.44]	chr13	532032	467	INTRON	INTRON	USP12	ENSG00000152484.14	ENST00000282344.11	protein_coding	protein_coding	protein_coding	protein_coding	6	62	2	1.85866	2.288885	2.71911	0.0189489	0.0106944	0.108861	0.091856
chr14	101827115	101827215	5819162	0	+	0.49	(0.476,0.515]	chr14	551860	18	INTRON	INTRON	PPP2R5C	ENSG00000078304.20	ENST00000694906.1:ENST00000422945.6:ENST00000554442.5:ENST00000328724.9:ENST00000553890.1:ENST00000350249.7:ENST00000557621.5:ENST00000556946.1:ENST00000556307.5:ENST00000553730.5:ENST00000557714.1:ENST00000334743.9:ENST00000445439.7:ENST00000557095.5:ENST00000556493.1:ENST00000553842.1:ENST00000556373.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	132	2	2.22708	2.288785	2.35049	0.00263694	6.9061e-4	0.0458452	0.0240212
chr1	8797278	8797378	373581	0	-	0.53	(0.515,0.57]	chr1	43555	43	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000656437.1:ENST00000659924.1	protein_coding	protein_coding	protein_coding	protein_coding	5	54	2	1.94493	2.288715	2.6325	0.0204583	0.00439001	0.122204	0.0585064
chr11	2979737	2979834	4891871	0	-	0.298969	(0.28,0.32]	chr11	458353	1	INTRON	INTRON	NAP1L4	ENSG00000205531.13	ENST00000620138.4:ENST00000380542.9:ENST00000526115.5:ENST00000532325.6:ENST00000448187.5:ENST00000399614.6:ENST00000430811.5:ENST00000529361.5:ENST00000528968.5:ENST00000530064.5:ENST00000526842.5:ENST00000531291.5:ENST00000455338.6:ENST00000534372.1	protein_coding	protein_coding	protein_coding	protein_coding	5	68	2	1.79739	2.288715	2.78004	0.0224995	0.0193244	0.124921	0.108861
chr22	23184230	23184330	7483240	0	+	0.39	(0.378,0.408]	chr22	763531	16	INTRON	INTRON	BCR	ENSG00000186716.21	ENST00000479188.5:ENST00000359540.7:ENST00000305877.13	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	15	176	2	1.85625	2.288695	2.72114	0.00336966	3.34676e-4	0.0516766	0.01628
chr16	21487716	21487816	6461230	0	-	0.41	(0.408,0.44]	chr16	623370	1	SS3_PROX	SS3_PROX:INTRON	SMG1P3	ENSG00000180747.15	ENST00000522480.5:ENST00000522841.6:ENST00000437413.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	4	51	2	2.18807	2.288675	2.38928	0.0708044	0.0039105	0.184528	0.0569957
chr2	58220002	58220100	1126537	0	-	0.336735	(0.32,0.35]	chr2	120943	22	INTRON	INTRON	FANCL	ENSG00000115392.13	ENST00000696400.1:ENST00000403295.8:ENST00000696492.1:ENST00000427708.7:ENST00000696314.1:ENST00000696315.1:ENST00000696454.1:ENST00000696508.1:ENST00000696548.1:ENST00000696542.1:ENST00000696319.1:ENST00000403676.6:ENST00000696433.1:ENST00000696434.1:ENST00000696499.1:ENST00000696564.1:ENST00000402135.8:ENST00000696546.1:ENST00000233741.9:ENST00000696316.1:ENST00000696378.1:ENST00000696435.1:ENST00000696493.1:ENST00000696543.1:ENST00000696544.1:ENST00000696545.1:ENST00000696565.1:ENST00000696620.1:ENST00000696621.1:ENST00000696635.1:ENST00000696364.1:ENST00000696634.1:ENST00000696317.1:ENST00000696622.1:ENST00000696467.1:ENST00000696547.1:ENST00000449070.6:ENST00000696305.1:ENST00000417361.2:ENST00000696338.1:ENST00000696361.1:ENST00000696318.1:ENST00000696371.1:ENST00000696409.1:ENST00000696410.1:ENST00000696455.1:ENST00000696468.1:ENST00000696527.1:ENST00000696567.1:ENST00000696324.1:ENST00000696566.1:ENST00000696623.1:ENST00000446381.6:ENST00000696469.1:ENST00000696624.1:ENST00000696411.1:ENST00000470506.2:ENST00000696358.1:ENST00000696373.1:ENST00000696394.1:ENST00000696320.1:ENST00000696395.1:ENST00000696341.1:ENST00000696340.1:ENST00000696374.1:ENST00000696396.1:ENST00000696342.1:ENST00000696325.1:ENST00000696399.1:ENST00000696398.1:ENST00000696306.1:ENST00000696397.1:ENST00000696360.1:ENST00000696344.1:ENST00000696343.1:ENST00000696362.1:ENST00000696528.1:ENST00000696326.1:ENST00000696625.1:ENST00000696510.1:ENST00000696438.1:ENST00000696496.1:ENST00000696509.1:ENST00000696569.1:ENST00000696457.1:ENST00000696458.1:ENST00000696473.1:ENST00000696495.1:ENST00000696415.1:ENST00000696472.1:ENST00000696459.1:ENST00000696416.1:ENST00000696530.1:ENST00000696460.1:ENST00000696570.1:ENST00000696531.1:ENST00000696307.1:ENST00000696345.1:ENST00000696377.1:ENST00000696417.1:ENST00000696594.1:ENST00000696595.1:ENST00000696379.1:ENST00000696346.1:ENST00000696380.1:ENST00000696347.1:ENST00000696461.1:ENST00000696596.1:ENST00000696549.1:ENST00000696597.1:ENST00000696550.1:ENST00000696598.1:ENST00000696321.1:ENST00000696476.1:ENST00000696477.1:ENST00000696511.1:ENST00000481670.3:ENST00000696403.1:ENST00000696551.1:ENST00000696308.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	54	2	1.83315	2.28865	2.74415	0.0313348	0.0198267	0.144381	0.109608
chr19	3967381	3967481	7119021	0	-	0.59	(0.57,1]	chr19	716043	20	INTRON	INTRON	DAPK3	ENSG00000167657.14	ENST00000545797.7:ENST00000301264.7:ENST00000596311.5:ENST00000601824.1:ENST00000593844.1	protein_coding	protein_coding	protein_coding	protein_coding	5	33	2	2.24434	2.288645	2.33295	0.0122896	0.00677343	0.091087	0.074225
chr6	15317725	15317825	2823664	0	+	0.58	(0.57,1]	chr6	265192	28	INTRON	INTRON	JARID2	ENSG00000008083.14	ENST00000341776.7:ENST00000397311.4	protein_coding	protein_coding	protein_coding	protein_coding	5	33	2	2.24434	2.288645	2.33295	0.0122896	0.00677343	0.091087	0.074225
chr22	21981600	21981699	7562016	0	-	0.515152	(0.476,0.515]	chr22	773552	51	INTRON	INTRON	TOP3B	ENSG00000100038.20	ENST00000357179.10:ENST00000457179.5:ENST00000444502.5:ENST00000398793.6:ENST00000424393.5:ENST00000437929.5:ENST00000430142.5:ENST00000456075.5:ENST00000449704.5:ENST00000437103.1:ENST00000434517.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	131	2	1.72827	2.288605	2.84894	0.00969651	2.32094e-4	0.0874888	0.0139633
chr6	35879632	35879732	3088402	0	-	0.31	(0.28,0.32]	chr6	288860	49	INTRON	INTRON	SRPK1	ENSG00000096063.16	ENST00000373825.7:ENST00000423325.6:ENST00000346162.10:ENST00000361690.7:ENST00000510290.5:ENST00000373821.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	80	2	1.83303	2.288605	2.74418	0.0370023	0.00328589	0.139194	0.0527031
chr1	96786949	96787049	168604	0	+	0.29	(0.28,0.32]	chr1	18249	13	INTRON	INTRON	PTBP2	ENSG00000117569.19	ENST00000482253.5:ENST00000675735.1:ENST00000609116.5:ENST00000674951.1:ENST00000675080.1:ENST00000426398.3:ENST00000370197.5:ENST00000370198.5:ENST00000476419.5:ENST00000676292.1:ENST00000676096.1:ENST00000675365.1:ENST00000674579.1:ENST00000675401.1:ENST00000459735.5:ENST00000476783.5:ENST00000492905.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	13	204	2	2.13957	2.288545	2.43752	0.00188821	0.00112399	0.0402736	0.0306963
chr18	80122734	80122834	6938225	0	+	0.32	(0.28,0.32]	chr18	686196	47	INTRON	INTRON	ADNP2	ENSG00000101544.9	ENST00000262198.9:ENST00000560752.5:ENST00000559951.5:ENST00000560561.1:ENST00000561195.1	protein_coding	protein_coding	protein_coding	protein_coding	7	113	2	1.96802	2.288495	2.60897	0.0251578	8.17961e-4	0.12011	0.0261401
chr15	64683780	64683879	6046332	0	+	0.434343	(0.408,0.44]	chr15	575746	22	UTR3	UTR3:EXON_MRNA	ZNF609	ENSG00000180357.10	ENST00000326648.5	protein_coding	protein_coding	protein_coding	protein_coding	7	87	2	2.12303	2.28849	2.45395	0.00586883	0.00366321	0.0690758	0.0535094
chr8	129458393	129458493	4059858	0	-	0.59	(0.57,1]	chr8	369602	11	INTRON	INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1:ENST00000676273.1:ENST00000667643.1:ENST00000668791.1:ENST00000663716.1:ENST00000663572.1:ENST00000676148.1:ENST00000667962.1:ENST00000674877.1:ENST00000675316.1:ENST00000674656.1:ENST00000446592.7:ENST00000667341.1:ENST00000675186.1:ENST00000652971.1:ENST00000661447.1:ENST00000674863.1:ENST00000675498.1:ENST00000675527.1:ENST00000676108.1:ENST00000657647.1:ENST00000675589.1:ENST00000675913.1:ENST00000675109.1:ENST00000671632.1:ENST00000671311.1:ENST00000676099.1:ENST00000660652.1:ENST00000675522.1:ENST00000675183.1:ENST00000658861.1:ENST00000663991.1:ENST00000675044.1:ENST00000675435.1:ENST00000674639.1:ENST00000676069.1:ENST00000675532.1:ENST00000674762.1:ENST00000523151.6:ENST00000675948.1:ENST00000665364.1:ENST00000657251.1:ENST00000675166.1:ENST00000674883.1:ENST00000675867.1:ENST00000674580.1:ENST00000675393.1:ENST00000520048.1:ENST00000674906.1:ENST00000676030.1:ENST00000670588.1:ENST00000675072.1:ENST00000664936.1:ENST00000652914.1:ENST00000657069.1	lncRNA	lncRNA	lncRNA	lncRNA	5	33	2	1.98953	2.28843	2.58733	0.0182848	0.00454222	0.115629	0.0595107
chr17	62009172	62009270	6810309	0	-	0.27551	[0,0.28]	chr17	672913	18	INTRON	INTRON	MED13	ENSG00000108510.10	ENST00000397786.7	protein_coding	protein_coding	protein_coding	protein_coding	4	67	2	1.79953	2.288345	2.77716	0.0377477	0.022039	0.156608	0.115395
chr3	152336329	152336429	1535664	0	+	0.29	(0.28,0.32]	chr3	160003	7	INTRON	INTRON	MBNL1	ENSG00000152601.18	ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000495875.6:ENST00000324210.10:ENST00000493459.5:ENST00000459747.1:ENST00000460591.5:ENST00000545754.5:ENST00000357472.7:ENST00000324196.9:ENST00000498502.5:ENST00000463374.5:ENST00000485910.5:ENST00000465907.6:ENST00000492948.5:ENST00000485509.5:ENST00000464596.5	protein_coding	protein_coding	protein_coding	protein_coding	5	81	2	1.60343	2.28821	2.97299	0.0669889	0.00126436	0.183051	0.0329641
chr4	110148090	110148190	2227229	0	-	0.32	(0.28,0.32]	chr4	218024	421	INTRON	INTRON	ELOVL6	ENSG00000170522.10	ENST00000394607.7:ENST00000302274.8:ENST00000514184.5:ENST00000506625.5:ENST00000506461.1:ENST00000503885.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	80	2	1.79721	2.28819	2.77917	0.0408024	0.00285651	0.1451	0.0494641
chr12	123360910	123361009	5445169	0	-	0.515152	(0.476,0.515]	chr12	521118	101	INTRON	INTRON	SBNO1	ENSG00000139697.14	ENST00000602398.3:ENST00000267176.8	protein_coding	protein_coding	protein_coding	protein_coding	5	63	2	1.91525	2.288185	2.66112	0.0232571	0.0044598	0.127416	0.0592169
chr8	128014137	128014237	3862275	0	+	0.51	(0.476,0.515]	chr8	355517	33	INTRON	INTRON	PVT1	ENSG00000249859.13	ENST00000667305.1:ENST00000690350.1:ENST00000653522.1:ENST00000661830.1:ENST00000657289.1:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000657211.1:ENST00000653845.1:ENST00000651587.1:ENST00000692980.1:ENST00000654324.1:ENST00000657693.1:ENST00000666080.1:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000662410.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000657356.1:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000667714.1:ENST00000654105.1:ENST00000660438.1:ENST00000664995.1:ENST00000670714.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000668123.1:ENST00000666776.1:ENST00000659912.1:ENST00000670532.1:ENST00000523068.2:ENST00000671088.1:ENST00000670204.1:ENST00000663461.1:ENST00000513868.6:ENST00000692433.1:ENST00000523190.7:ENST00000685606.1:ENST00000690788.1:ENST00000685634.1:ENST00000653990.1:ENST00000655783.1:ENST00000656411.1:ENST00000664742.1:ENST00000655099.1:ENST00000662709.1:ENST00000512617.7:ENST00000660122.1:ENST00000666452.1:ENST00000659666.1:ENST00000659892.1:ENST00000521600.5:ENST00000522875.5:ENST00000653497.1:ENST00000668098.1:ENST00000659106.1:ENST00000666147.1:ENST00000658350.1:ENST00000656999.1:ENST00000664610.1:ENST00000671092.1:ENST00000653853.1	lncRNA	lncRNA	lncRNA	lncRNA	5	63	2	1.91525	2.288185	2.66112	0.0232571	0.0044598	0.127416	0.0592169
chr3	138558327	138558427	1829274	0	-	0.44	(0.408,0.44]	chr3	183871	206	INTRON	INTRON	CEP70	ENSG00000114107.9	ENST00000264982.8:ENST00000489254.5:ENST00000484888.5:ENST00000474781.5:ENST00000481834.5:ENST00000468900.5:ENST00000462419.5:ENST00000478673.5:ENST00000464035.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	63	2	2.26792	2.28815	2.30838	0.0179973	0.00547703	0.106756	0.0671198
chr9	131402247	131402346	4217051	0	+	0.434343	(0.408,0.44]	chr9	386720	76	INTRON	INTRON	PRRC2B	ENSG00000288701.1	ENST00000682525.1:ENST00000684596.1:ENST00000683519.1:ENST00000682501.1	protein_coding	protein_coding	protein_coding	protein_coding	5	63	2	2.26792	2.28815	2.30838	0.0179973	0.00547703	0.106756	0.0671198
chrX	154780246	154780344	7915343	0	-	0.316327	(0.28,0.32]	chrX	806120	5	INTRON	INTRON	MPP1	ENSG00000130830.15	ENST00000369534.8:ENST00000413259.7:ENST00000491955.5:ENST00000482757.1:ENST00000439370.5:ENST00000393531.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	68	2	1.76293	2.288135	2.81334	0.0766478	0.00248627	0.196164	0.0461207
chr15	66583946	66584046	6050800	0	+	0.52	(0.515,0.57]	chr15	576221	13	INTRON	INTRON	LINC01169	ENSG00000259471.1	ENST00000558797.1	lncRNA	lncRNA	lncRNA	lncRNA	9	95	2	1.97876	2.288105	2.59745	0.00610685	6.62645e-4	0.0706941	0.0234815
chr20	31707059	31707159	7325214	0	-	0.45	(0.44,0.476]	chr20	745996	221	INTRON	INTRON	BCL2L1	ENSG00000171552.14	ENST00000376055.9:ENST00000376062.6:ENST00000307677.5:ENST00000420488.6:ENST00000439267.2:ENST00000678563.1:ENST00000456404.6:ENST00000676942.1:ENST00000676582.1:ENST00000434194.2:ENST00000677194.1:ENST00000678671.1:ENST00000677494.1:ENST00000422920.2:ENST00000450273.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	53	2	1.54868	2.288095	3.02751	0.0457575	0.00715968	0.164677	0.0723634
chr1	45014346	45014438	92780	0	+	0.380435	(0.378,0.408]	chr1	12443	4	EXON_MRNA	EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	UROD	ENSG00000126088.14	ENST00000652165.1:ENST00000651476.1:ENST00000636293.1:ENST00000636836.1:ENST00000652287.1:ENST00000491300.5:ENST00000491773.6:ENST00000494399.5:ENST00000246337.9:ENST00000434478.6:ENST00000462688.5:ENST00000469548.5:ENST00000486699.5:ENST00000478467.5:ENST00000428106.1:ENST00000652514.1:ENST00000472254.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	66	2	1.94559	2.28808	2.63057	0.0211434	0.0053733	0.122929	0.0642754
chr4	2912800	2912899	1915737	0	+	0.444444	(0.44,0.476]	chr4	192335	30	INTRON	INTRON	ADD1	ENSG00000087274.19	ENST00000683351.1:ENST00000398125.5:ENST00000264758.11:ENST00000513328.6:ENST00000503455.6:ENST00000355842.7:ENST00000651918.1:ENST00000398129.5:ENST00000398123.6:ENST00000514940.5:ENST00000541051.5:ENST00000513762.2:ENST00000536424.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	86	2	1.96975	2.287975	2.6062	0.0123514	0.00148054	0.0914865	0.0353633
chr4	55423397	55423492	1960874	0	+	0.410526	(0.408,0.44]	chr4	196578	4	EXON_MRNA	EXON_MRNA:INTRON	TMEM165	ENSG00000134851.13	ENST00000381334.10:ENST00000506198.5:ENST00000508404.5:ENST00000514904.5:ENST00000508561.5:ENST00000608091.1:ENST00000509575.1:ENST00000506103.2:ENST00000515591.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	65	2	2.00228	2.287965	2.57365	0.0389732	0.00172241	0.143072	0.0383099
chr11	70420879	70420969	4821851	0	+	0.577778	(0.57,1]	chr11	449641	4	SS5_PROX	SS5_PROX:INTRON	CTTN	ENSG00000085733.16	ENST00000346329.7:ENST00000301843.13:ENST00000376561.7:ENST00000527962.5:ENST00000483662.2:ENST00000498223.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	40	2	2.07956	2.287885	2.49621	0.013114	0.00209832	0.0998629	0.0413494
chr20	32358965	32359050	7255819	0	+	0.764706	(0.57,1]	chr20	737033	1	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	ASXL1	ENSG00000171456.21	ENST00000651418.1:ENST00000375687.10:ENST00000613218.4:ENST00000646367.1:ENST00000644587.1:ENST00000620121.4:ENST00000645337.1:ENST00000649901.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	40	2	2.07956	2.287885	2.49621	0.013114	0.00209832	0.0998629	0.0413494
chr11	62763126	62763226	4799065	0	+	0.46	(0.44,0.476]	chr11	444677	1	SS5_PROX	SS5_PROX:INTRON	POLR2G	ENSG00000168002.12	ENST00000533442.5:ENST00000301788.12:ENST00000525455.5:ENST00000524819.5:ENST00000531944.5:ENST00000527435.5:ENST00000531996.5:ENST00000526368.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	53	2	2.14573	2.287845	2.42996	0.0238593	0.0104804	0.129075	0.0855777
chr6	125294204	125294303	3209494	0	-	0.272727	[0,0.28]	chr6	298660	9	INTRON	INTRON	HDDC2	ENSG00000111906.18	ENST00000609477.5:ENST00000318787.13:ENST00000398153.7:ENST00000608295.5:ENST00000608461.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	41	2	2.20927	2.28782	2.36637	0.0794763	0.0500615	0.19979	0.17488
chr12	91499114	91499214	5384207	0	-	0.56	(0.515,0.57]	chr12	513479	994	INTRON	INTRON	ENSG00000289605	ENSG00000289605.1	ENST00000685093.1	lncRNA	lncRNA	lncRNA	lncRNA	13	130	2	1.92316	2.2878	2.65244	0.00318225	1.82258e-4	0.0504419	0.0117546
chr2	20328761	20328859	1076564	0	-	0.295918	(0.28,0.32]	chr2	115035	10	INTRON	INTRON	PUM2	ENSG00000055917.16	ENST00000361078.7:ENST00000442400.5:ENST00000420234.5:ENST00000429419.6:ENST00000432105.5:ENST00000446940.5:ENST00000424110.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	61	2	2.18212	2.287795	2.39347	0.0504457	0.010265700000000001	0.156383	0.089002
chr15	58013657	58013757	6187016	0	-	0.56	(0.515,0.57]	chr15	589769	4	SS5_PROX	SS5_PROX:INTRON	ALDH1A2	ENSG00000128918.15	ENST00000537372.5:ENST00000249750.9:ENST00000347587.7:ENST00000430119.6:ENST00000558231.5:ENST00000559517.5:ENST00000559266.5:ENST00000561070.5:ENST00000558595.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	74	2	1.73168	2.287775	2.84387	0.0119342	0.0018149	0.0962115	0.0384415
chr11	57773416	57773516	4793247	0	+	0.46	(0.44,0.476]	chr11	443717	89	INTRON	INTRON	ENSG00000288534:CTNND1	ENSG00000288534.1:ENSG00000198561.16	ENST00000673781.1:ENST00000673810.1:ENST00000674116.1:ENST00000674060.1:ENST00000524630.5:ENST00000529919.5:ENST00000533189.1:ENST00000682741.1:ENST00000358694.10:ENST00000361332.8:ENST00000361391.10:ENST00000361796.9:ENST00000415361.6:ENST00000426142.6:ENST00000428599.6:ENST00000525902.5:ENST00000526357.5:ENST00000526772.5:ENST00000527467.5:ENST00000528232.5:ENST00000528621.5:ENST00000529526.5:ENST00000529873.5:ENST00000529986.5:ENST00000530094.5:ENST00000530748.5:ENST00000531014.5:ENST00000532245.5:ENST00000532463.5:ENST00000532649.5:ENST00000532787.5:ENST00000532844.5:ENST00000533667.5:ENST00000534579.5:ENST00000399050.10:ENST00000526938.5:ENST00000531007.2:ENST00000674015.1:ENST00000673826.1:ENST00000673683.1:ENST00000674106.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	129	2	1.14294	2.28776	3.43258	0.0644337	1.45646e-5	0.178924	0.00285856
chr2	108573295	108573394	846235	0	+	0.363636	(0.35,0.378]	chr2	94665	21	INTRON	INTRON	LIMS1	ENSG00000169756.17	ENST00000695516.1:ENST00000544547.6:ENST00000695517.1:ENST00000695518.1	protein_coding	protein_coding	protein_coding	protein_coding	7	72	2	1.6344	2.287755	2.94111	0.0189573	0.0104563	0.118501	0.0855102
chr1	84680687	84680787	496679	0	-	0.34	(0.32,0.35]	chr1	58895	3	SS3_PROX	SS3_PROX:INTRON	SSX2IP	ENSG00000117155.17	ENST00000342203.8:ENST00000437941.6:ENST00000481102.5:ENST00000476905.6:ENST00000605755.5:ENST00000603677.1:ENST00000422026.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	132	2	1.99685	2.287725	2.5786	0.00667915	0.0012954	0.0738715	0.0329737
chr3	172255539	172255639	1561716	0	+	0.51	(0.476,0.515]	chr3	161582	36	INTRON	INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000469491.5:ENST00000336824.8:ENST00000416957.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	53	2	1.68907	2.2876849999999997	2.8863	0.0296007	0.0111679	0.142135	0.0877435
chr14	55053396	55053496	5725387	0	+	0.4	(0.378,0.408]	chr14	543372	12	INTRON	INTRON	MAPK1IP1L	ENSG00000168175.15	ENST00000395468.9:ENST00000554364.1:ENST00000622254.1:ENST00000556515.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	49	2	1.58349	2.287595	2.9917	0.0653091	0.0068789	0.180158	0.0749442
chr2	171111354	171111454	1263602	0	-	0.43	(0.408,0.44]	chr2	133913	197	INTRON	INTRON	TLK1	ENSG00000198586.14	ENST00000431350.7:ENST00000360843.7:ENST00000359766.7:ENST00000521943.5:ENST00000409443.6:ENST00000413010.5:ENST00000470340.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	53	2	1.88062	2.287595	2.69457	0.0534548	0.00331036	0.162935	0.0527031
chr9	130801453	130801553	4214739	0	+	0.52	(0.515,0.57]	chr9	386427	866	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000393293.4	protein_coding	protein_coding	protein_coding	protein_coding	11	114	2	2.23501	2.28756	2.34011	0.00132333	0.00106662	0.03326	0.0300133
chr10	73477701	73477800	4649969	0	-	0.454545	(0.44,0.476]	chr10	427911	23	INTRON	INTRON	PPP3CB	ENSG00000107758.16	ENST00000360663.10:ENST00000394828.6:ENST00000394829.6:ENST00000342558.3	protein_coding	protein_coding	protein_coding	protein_coding	4	52	2	2.02558	2.28751	2.54944	0.0363567	0.00591346	0.138959	0.0694038
chr7	98944765	98944861	3359943	0	+	0.447917	(0.44,0.476]	chr7	313524	14	INTRON	INTRON	TRRAP	ENSG00000196367.14	ENST00000355540.7:ENST00000359863.8:ENST00000628380.2:ENST00000456197.2:ENST00000446306.7	protein_coding	protein_coding	protein_coding	protein_coding	6	59	2	1.4962	2.28741	3.07862	0.0392301	0.0060153	0.161534	0.0674604
chr10	74111310	74111408	4455658	0	+	0.408163	(0.378,0.408]	chr10	411497	18	INTRON	INTRON	VCL	ENSG00000035403.18	ENST00000623461.3:ENST00000372755.7:ENST00000624354.3:ENST00000211998.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	40	2	2.11103	2.2873799999999997	2.46373	0.0382831	0.0266911	0.141795	0.134419
chr9	130735454	130735554	4214079	0	+	0.25	[0,0.28]	chr9	386427	206	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000393293.4	protein_coding	protein_coding	protein_coding	protein_coding	13	217	2	1.67076	2.28737	2.90398	0.0161305	2.49497e-4	0.101453	0.0140229
chr14	31457186	31457286	5860726	0	-	0.63	(0.57,1]	chr14	556987	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	ENSG00000203546:DTD2	ENSG00000203546.7:ENSG00000129480.13	ENST00000549185.5:ENST00000547378.1:ENST00000547760.1:ENST00000310850.9:ENST00000356180.4:ENST00000549850.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	25	2	1.79063	2.28736	2.78409	0.0356001	0.0116033	0.15159	0.0889104
chr19	15258978	15259069	7146656	0	-	0.604396	(0.57,1]	chr19	721909	2	EXON_LNCRNA	EXON_LNCRNA:INTRON	BRD4	ENSG00000141867.19	ENST00000679869.1:ENST00000263377.6:ENST00000371835.8:ENST00000360016.9:ENST00000594841.5:ENST00000602230.1:ENST00000678800.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	25	2	1.79063	2.28736	2.78409	0.0356001	0.0116033	0.15159	0.0889104
chr1	228089252	228089347	330835	0	+	0.6	(0.57,1]	chr1	38115	6	INTRON	INTRON	ARF1	ENSG00000143761.16	ENST00000540651.5:ENST00000272102.10:ENST00000470670.5:ENST00000478424.5:ENST00000470558.5:ENST00000473949.5:ENST00000477451.5:ENST00000478336.5:ENST00000541182.1:ENST00000469235.5:ENST00000473546.1:ENST00000482962.5:ENST00000497165.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	25	2	1.67986	2.287245	2.89463	0.0496395	0.00788262	0.174685	0.076155
chr16	87866308	87866406	6539066	0	-	0.581633	(0.57,1]	chr16	633647	28	INTRON	INTRON	SLC7A5	ENSG00000103257.9	ENST00000261622.5	protein_coding	protein_coding	protein_coding	protein_coding	4	25	2	1.67986	2.287245	2.89463	0.0496395	0.00788262	0.174685	0.076155
chr17	49756521	49756621	6794080	0	-	0.46	(0.44,0.476]	chr17	670428	94	INTRON	INTRON	FAM117A	ENSG00000121104.8	ENST00000240364.7:ENST00000513602.5:ENST00000503855.5:ENST00000514018.5:ENST00000505159.5:ENST00000506156.1:ENST00000509347.5:ENST00000503720.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	64	2	1.55662	2.28722	3.01782	0.0688347	7.8136e-4	0.184298	0.0257169
chr2	55361021	55361120	1123794	0	-	0.40404	(0.378,0.408]	chr2	120531	44	INTRON	INTRON	CCDC88A	ENSG00000115355.18	ENST00000263630.13:ENST00000436346.7:ENST00000336838.10:ENST00000642200.1:ENST00000413716.7:ENST00000643413.1:ENST00000647401.1:ENST00000643265.1:ENST00000645311.1:ENST00000646796.1:ENST00000645571.1:ENST00000645477.1:ENST00000645072.1:ENST00000644890.1:ENST00000644630.1:ENST00000647098.1:ENST00000646324.1:ENST00000642890.1:ENST00000647517.1:ENST00000645031.1:ENST00000645484.1:ENST00000645529.1:ENST00000644033.1:ENST00000644193.1:ENST00000647383.1:ENST00000645168.1:ENST00000647341.1:ENST00000644332.1:ENST00000430086.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	40	2	1.97143	2.287195	2.60296	0.0398704	0.0267851	0.161534	0.123349
chrX	123611816	123611916	7877799	0	-	0.32	(0.28,0.32]	chrX	802405	3	SS3_PROX	SS3_PROX:INTRON	THOC2	ENSG00000125676.20	ENST00000448128.5:ENST00000245838.13:ENST00000441692.5:ENST00000492203.1:ENST00000497887.5:ENST00000618150.4:ENST00000432353.5:ENST00000455053.5:ENST00000355725.8:ENST00000416618.5:ENST00000491737.5:ENST00000464992.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	136	2	1.62903	2.28719	2.94535	0.0114994	0.00213731	0.0958308	0.0417866
chr2	107741845	107741945	1205968	0	-	0.29	(0.28,0.32]	chr2	128532	242	INTRON	INTRON	LINC01885:ENSG00000286769	ENSG00000237880.2:ENSG00000286769.1	ENST00000654481.1:ENST00000669817.1	lncRNA	lncRNA	lncRNA	lncRNA	15	228	2	2.07785	2.287185	2.49652	0.00150487	8.59605e-4	0.0359218	0.0267437
chr5	131791813	131791913	2720693	0	-	0.23	[0,0.28]	chr5	255730	468	INTRON	INTRON	FNIP1	ENSG00000217128.13	ENST00000510461.6:ENST00000307954.12:ENST00000307968.11:ENST00000511848.1	protein_coding	protein_coding	protein_coding	protein_coding	4	67	2	1.84046	2.28715	2.73384	0.0335889	0.0246308	0.146709	0.12011
chr9	96916449	96916549	4298011	0	-	0.43	(0.408,0.44]	chr9	395221	130	INTRON	INTRON	MFSD14C	ENSG00000196312.15	ENST00000647176.1:ENST00000637409.1:ENST00000506067.1:ENST00000645073.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	8	99	2	2.1269	2.2870999999999997	2.4473	0.00691204	0.0013419	0.0718189	0.0336974
chr1	8773419	8773519	373342	0	-	0.54	(0.515,0.57]	chr1	43549	197	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000656437.1:ENST00000659924.1	protein_coding	protein_coding	protein_coding	protein_coding	4	45	2	1.9459	2.287035	2.62817	0.0429089	0.004048	0.148082	0.0578376
chr15	75904816	75904903	6065666	0	+	0.54023	(0.515,0.57]	chr15	577624	2	SS5_PROX	SS5_PROX:INTRON	FBXO22	ENSG00000167196.14	ENST00000569749.5:ENST00000308275.8:ENST00000569022.1:ENST00000453211.6:ENST00000565131.5:ENST00000565036.5:ENST00000569054.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	45	2	1.9459	2.287035	2.62817	0.0429089	0.004048	0.148082	0.0578376
chrX	110038128	110038228	7700388	0	+	0.52	(0.515,0.57]	chrX	788130	336	INTRON	INTRON	TMEM164	ENSG00000157600.12	ENST00000372072.7:ENST00000471255.5:ENST00000372073.5:ENST00000372068.7:ENST00000288381.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	45	2	1.9459	2.287035	2.62817	0.0429089	0.004048	0.148082	0.0578376
chr6	10897413	10897510	2811847	0	+	0.484536	(0.476,0.515]	chr6	264556	29	INTRON	INTRON	SYCP2L	ENSG00000153157.13	ENST00000341041.8:ENST00000283141.11:ENST00000543878.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	18	209	2	1.95717	2.287025	2.61688	0.00181205	9.10492e-5	0.0384356	0.00797978
chr16	28386166	28386265	6468539	0	-	0.464646	(0.44,0.476]	chr16	624628	23	INTRON	INTRON	EIF3CL	ENSG00000205609.13	ENST00000398944.7:ENST00000380876.5	protein_coding	protein_coding	protein_coding	protein_coding	3	40	2	2.08277	2.2869450000000002	2.49112	0.0315968	0.0309998	0.144381	0.13151
chr3	9816790	9816878	1361179	0	+	0.465909	(0.44,0.476]	chr3	143161	2	INTRON	INTRON	ARPC4-TTLL3:TTLL3	ENSG00000250151.9:ENSG00000214021.17	ENST00000397256.5:ENST00000419081.5:ENST00000417065.5:ENST00000459758.5:ENST00000438596.5:ENST00000427220.5:ENST00000426895.10:ENST00000431204.5:ENST00000426827.5:ENST00000685419.1:ENST00000422738.5:ENST00000430390.5:ENST00000483051.5:ENST00000310252.11:ENST00000496526.5:ENST00000496246.5:ENST00000452823.5:ENST00000474948.5:ENST00000443148.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	40	2	2.08277	2.2869450000000002	2.49112	0.0315968	0.0309998	0.144381	0.13151
chr6	43533057	43533155	3096883	0	-	0.469388	(0.44,0.476]	chr6	290010	11	INTRON	INTRON	XPO5	ENSG00000124571.18	ENST00000265351.12:ENST00000398835.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	40	2	2.08277	2.2869450000000002	2.49112	0.0315968	0.0309998	0.144381	0.13151
chr7	111339781	111339881	3621880	0	-	0.34	(0.32,0.35]	chr7	337093	3759	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	45	2	1.88468	2.2869450000000002	2.68921	0.0515071	0.0230336	0.176696	0.118056
chr5	140670351	140670451	2504637	0	+	0.52	(0.515,0.57]	chr5	239541	8	UTR3	UTR3:EXON_MRNA:INTRON	WDR55	ENSG00000120314.19	ENST00000506393.5:ENST00000358337.10:ENST00000511232.5:ENST00000504897.2:ENST00000520764.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	12	127	2	2.21892	2.286895	2.35487	0.00198472	4.60561e-4	0.0411469	0.0198034
chr5	139309294	139309387	2499538	0	+	0.376344	(0.35,0.378]	chr5	238921	6	INTRON	INTRON	MATR3	ENSG00000280987.4:ENSG00000015479.20	ENST00000509990.5:ENST00000506147.5:ENST00000512107.5:ENST00000361059.7:ENST00000394800.6:ENST00000502929.5:ENST00000504203.5:ENST00000509644.5:ENST00000512876.5:ENST00000513678.5:ENST00000513121.1:ENST00000504045.5:ENST00000504311.5:ENST00000502499.5:ENST00000510056.5:ENST00000511249.5:ENST00000394805.8:ENST00000507860.1:ENST00000509918.5:ENST00000503811.5:ENST00000511978.5:ENST00000618441.5:ENST00000514528.5:ENST00000504643.5:ENST00000515833.2:ENST00000514402.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	10	126	2	2.2197	2.28686	2.35402	0.00596483	0.00100579	0.0674604	0.0292285
chr6	28366882	28366981	2840203	0	+	0.474747	(0.44,0.476]	chr6	266704	7	UTR3	UTR3:EXON_MRNA	ZKSCAN3	ENSG00000189298.14	ENST00000252211.7:ENST00000377255.3	protein_coding	protein_coding	protein_coding	protein_coding	5	54	2	1.42812	2.286855	3.14559	0.0673866	0.00384923	0.183355	0.0562562
chr7	73504652	73504751	3554922	0	-	0.494949	(0.476,0.515]	chr7	330801	56	INTRON	INTRON	BAZ1B	ENSG00000009954.11	ENST00000339594.9:ENST00000404251.1	protein_coding	protein_coding	protein_coding	protein_coding	4	49	2	2.25138	2.2868399999999998	2.3223	0.0519312	0.00692374	0.159306	0.0753208
chr13	28189803	28189902	5461345	0	+	0.313131	(0.28,0.32]	chr13	523255	115	INTRON	INTRON	PAN3	ENSG00000152520.14	ENST00000503791.5:ENST00000380958.8:ENST00000399613.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	50	2	2.18975	2.28683	2.38391	0.0776042	0.0122525	0.196285	0.0969406
chr15	44524571	44524670	6015339	0	+	0.292929	(0.28,0.32]	chr15	573001	5	UTR3	UTR3:EXON_MRNA	CTDSPL2	ENSG00000137770.14	ENST00000260327.9:ENST00000558373.5:ENST00000559175.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	50	2	2.18975	2.28683	2.38391	0.0776042	0.0122525	0.196285	0.0969406
chr7	151475847	151475945	3674482	0	-	0.295918	(0.28,0.32]	chr7	341183	39	INTRON	INTRON	RHEB	ENSG00000106615.10	ENST00000262187.10:ENST00000472642.5:ENST00000478470.5:ENST00000496004.5:ENST00000470370.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	50	2	2.18975	2.28683	2.38391	0.0776042	0.0122525	0.196285	0.0969406
chr5	140654927	140655027	2504483	0	+	0.46	(0.44,0.476]	chr5	239471	2	SS5_PROX	SS5_PROX:INTRON	IK	ENSG00000113141.19	ENST00000417647.7:ENST00000508301.5	protein_coding	protein_coding	protein_coding	protein_coding	7	86	2	2.00165	2.2868250000000003	2.572	0.0109867	0.00173736	0.0873897	0.03851
chr8	27827804	27827904	3927231	0	-	0.39	(0.378,0.408]	chr8	359599	3	SS5_PROX	SS5_PROX:INTRON	PBK	ENSG00000168078.10	ENST00000301905.9:ENST00000522944.5:ENST00000524266.1:ENST00000521226.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	54	2	2.05897	2.286805	2.51464	0.0339294	0.00684341	0.134508	0.0748032
chr1	245987393	245987493	675504	0	-	0.31	(0.28,0.32]	chr1	79709	314	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000493441.5:ENST00000488153.5:ENST00000492487.5:ENST00000391836.3:ENST00000464398.1:ENST00000453676.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	80	2	2.06884	2.28673	2.50462	0.0152581	0.0102735	0.108569	0.0850389
chr1	19417963	19418062	388230	0	-	0.555556	(0.515,0.57]	chr1	46378	4	INTRON	INTRON	CAPZB	ENSG00000077549.19	ENST00000264202.8:ENST00000264203.7:ENST00000375142.5:ENST00000482808.2:ENST00000674449.1:ENST00000674390.1:ENST00000375144.6:ENST00000674432.1:ENST00000433834.5:ENST00000674228.1:ENST00000459967.6:ENST00000489607.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	25	2	2.23241	2.28664	2.34087	0.0581268	0.0469761	0.188651	0.151917
chr10	74108770	74108870	4455632	0	+	0.52	(0.515,0.57]	chr10	411492	4	SS3_PROX	SS3_PROX:INTRON	VCL	ENSG00000035403.18	ENST00000623461.3:ENST00000372755.7:ENST00000624354.3:ENST00000211998.10:ENST00000472585.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	25	2	2.23241	2.28664	2.34087	0.0581268	0.0469761	0.188651	0.151917
chr11	57746450	57746550	4792974	0	+	0.53	(0.515,0.57]	chr11	443700	30	INTRON	INTRON	ENSG00000288534	ENSG00000288534.1	ENST00000673781.1:ENST00000673810.1:ENST00000674116.1:ENST00000674060.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	2	25	2	2.23241	2.28664	2.34087	0.0581268	0.0469761	0.188651	0.151917
chr15	28204315	28204410	6122836	0	-	0.536842	(0.515,0.57]	chr15	583178	5	INTRON	INTRON	HERC2	ENSG00000128731.18	ENST00000261609.13	protein_coding	protein_coding	protein_coding	protein_coding	2	25	2	2.23241	2.28664	2.34087	0.0581268	0.0469761	0.188651	0.151917
chr15	40702524	40702622	6003254	0	+	0.530612	(0.515,0.57]	chr15	571015	2	INTRON	INTRON	RAD51	ENSG00000051180.17	ENST00000527860.5:ENST00000423169.6:ENST00000557850.5:ENST00000267868.8:ENST00000645673.2:ENST00000382643.7:ENST00000525066.5:ENST00000532743.6:ENST00000531277.2:ENST00000533741.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	25	2	2.23241	2.28664	2.34087	0.0581268	0.0469761	0.188651	0.151917
chr15	52034464	52034564	6029175	0	+	0.55	(0.515,0.57]	chr15	574427	62	INTRON	INTRON	MAPK6	ENSG00000069956.14	ENST00000560802.1:ENST00000691380.1:ENST00000558063.5:ENST00000560254.1:ENST00000681888.1:ENST00000261845.7:ENST00000680066.1:ENST00000680777.1:ENST00000558100.1:ENST00000680652.1:ENST00000558841.1:ENST00000558891.1:ENST00000560774.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	25	2	2.23241	2.28664	2.34087	0.0581268	0.0469761	0.188651	0.151917
chr4	183108619	183108719	2083874	0	+	0.52	(0.515,0.57]	chr4	205959	86	INTRON	INTRON	WWC2	ENSG00000151718.16	ENST00000403733.8:ENST00000508614.5:ENST00000448232.6:ENST00000513834.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	25	2	2.23241	2.28664	2.34087	0.0581268	0.0469761	0.188651	0.151917
chr5	54054486	54054586	2618350	0	-	0.57	(0.515,0.57]	chr5	248837	63	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	25	2	2.23241	2.28664	2.34087	0.0581268	0.0469761	0.188651	0.151917
chr6	7169464	7169564	2798982	0	+	0.53	(0.515,0.57]	chr6	263733	283	INTRON	INTRON	RREB1	ENSG00000124782.21	ENST00000379933.7:ENST00000491191.5:ENST00000471433.5:ENST00000379938.7:ENST00000467782.5:ENST00000349384.10:ENST00000334984.10:ENST00000475946.5:ENST00000483150.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	25	2	2.23241	2.28664	2.34087	0.0581268	0.0469761	0.188651	0.151917
chr9	96978935	96979035	4298642	0	-	0.56	(0.515,0.57]	chr9	395262	56	INTRON	INTRON	MFSD14C	ENSG00000196312.15	ENST00000647176.1:ENST00000645073.1:ENST00000637864.1:ENST00000652726.1:ENST00000637811.1:ENST00000650909.1	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript:transcribed_unprocessed_pseudogene	2	25	2	2.23241	2.28664	2.34087	0.0581268	0.0469761	0.188651	0.151917
chr20	47251332	47251432	7348446	0	-	0.55	(0.515,0.57]	chr20	749282	15	INTRON	INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000467200.6:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000468376.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	45	2	2.1885	2.2866299999999997	2.38476	0.0202537	0.0110593	0.121364	0.0873897
chr1	35099843	35099942	68117	0	+	0.444444	(0.44,0.476]	chr1	8682	19	INTRON	INTRON	ZMYM1	ENSG00000197056.11	ENST00000650449.1:ENST00000611874.4:ENST00000417119.5:ENST00000359858.9:ENST00000488455.5:ENST00000373330.1:ENST00000373329.5:ENST00000475654.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	94	2	1.20235	2.286595	3.37084	0.068424	1.26042e-4	0.184298	0.00959902
chr16	69992032	69992126	6508956	0	-	0.43617	(0.408,0.44]	chr16	630270	10	INTRON	INTRON	PDXDC2P-NPIPB14P	ENSG00000196696.13	ENST00000531894.5:ENST00000530079.5:ENST00000525331.6	lncRNA	lncRNA	lncRNA	lncRNA	6	76	2	1.96534	2.286595	2.60785	0.0216499	0.00146754	0.11491	0.035104
chr2	26361613	26361713	715166	0	+	0.43	(0.408,0.44]	chr2	82572	149	INTRON	INTRON	SELENOI	ENSG00000138018.19	ENST00000442141.5:ENST00000260585.12:ENST00000447170.1	protein_coding	protein_coding	protein_coding	protein_coding	3	39	2	2.21238	2.286555	2.36073	0.0481658	0.0193525	0.153019	0.119831
chr20	38071615	38071715	7269264	0	+	0.42	(0.408,0.44]	chr20	738717	11	INTRON	INTRON	RPRD1B	ENSG00000101413.12	ENST00000462548.6:ENST00000373433.9:ENST00000449186.2:ENST00000618318.1:ENST00000614670.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	39	2	2.21238	2.286555	2.36073	0.0481658	0.0193525	0.153019	0.119831
chr9	34120632	34120731	4246210	0	-	0.424242	(0.408,0.44]	chr9	390547	127	INTRON	INTRON	DCAF12	ENSG00000198876.13	ENST00000361264.9:ENST00000396990.6:ENST00000450964.1:ENST00000463286.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	39	2	2.21238	2.286555	2.36073	0.0481658	0.0193525	0.153019	0.119831
chr6	53346820	53346919	3108169	0	-	0.373737	(0.35,0.378]	chr6	291051	96	INTRON	INTRON	ELOVL5	ENSG00000012660.14	ENST00000370918.8:ENST00000542638.5:ENST00000304434.11:ENST00000485336.5:ENST00000465983.5:ENST00000486973.1:ENST00000370913.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	159	2	1.92522	2.286525	2.64783	0.00256457	8.22693e-4	0.0466761	0.0264913
chr3	11792970	11793070	1615534	0	-	0.56	(0.515,0.57]	chr3	166756	20	INTRON	INTRON	TAMM41	ENSG00000144559.11	ENST00000273037.9:ENST00000455809.6:ENST00000498127.5:ENST00000457498.5:ENST00000486090.1:ENST00000414736.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	62	2	1.25909	2.286485	3.31388	0.0547269	0.00174704	0.165463	0.0386026
chr20	47336057	47336157	7349305	0	-	0.38	(0.378,0.408]	chr20	749346	171	INTRON	INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000435836.5:ENST00000446894.5:ENST00000441977.1	protein_coding	protein_coding	protein_coding	protein_coding	7	84	2	1.58985	2.28648	2.98311	0.0290335	0.0013103	0.141186	0.0331539
chr1	149861270	149861364	220182	0	+	0.489362	(0.476,0.515]	chr1	24792	1	EXON_LNCRNA	EXON_LNCRNA	ENSG00000264207	ENSG00000264207.1	ENST00000577853.1	lncRNA	lncRNA	lncRNA	lncRNA	5	62	2	2.20789	2.286445	2.365	0.0128901	0.00820497	0.0926667	0.081115
chr21	34089183	34089282	7401249	0	+	0.525253	(0.515,0.57]	chr21	753967	151	INTRON	INTRON	MRPS6:SLC5A3	ENSG00000243927.6:ENSG00000198743.7	ENST00000488492.5:ENST00000477091.5:ENST00000399312.3:ENST00000381151.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	80	2	1.72899	2.28643	2.84387	0.00899744	0.0018149	0.0851009	0.0384415
chr1	114453312	114453412	527315	0	-	0.41	(0.408,0.44]	chr1	62137	192	INTRON	INTRON	TRIM33	ENSG00000197323.12	ENST00000358465.7:ENST00000369543.6:ENST00000448034.5	protein_coding	protein_coding	protein_coding	protein_coding	6	76	2	2.2644	2.28639	2.30838	0.00768371	0.00547703	0.0753803	0.0671198
chr3	136188399	136188499	1824160	0	-	0.43	(0.408,0.44]	chr3	183518	353	INTRON	INTRON	MSL2	ENSG00000174579.4	ENST00000309993.3:ENST00000434835.2:ENST00000481989.1:ENST00000491050.1:ENST00000473093.1	protein_coding	protein_coding	protein_coding	protein_coding	6	76	2	2.2644	2.28639	2.30838	0.00768371	0.00547703	0.0753803	0.0671198
chr1	24655229	24655329	45870	0	+	0.31	(0.28,0.32]	chr1	5715	1	SS5_PROX	SS5_PROX:INTRON	SRRM1	ENSG00000133226.18	ENST00000374389.8:ENST00000323848.14:ENST00000479034.5:ENST00000596378.1:ENST00000496882.5:ENST00000461768.5:ENST00000485541.1:ENST00000488317.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	59	2	1.94591	2.286385	2.62686	0.0289217	0.0228482	0.1274	0.125519
chr21	36323788	36323888	7403723	0	+	0.32	(0.28,0.32]	chr21	754279	31	INTRON	INTRON	MORC3	ENSG00000159256.13	ENST00000492336.5:ENST00000400485.6:ENST00000487909.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	59	2	1.94591	2.286385	2.62686	0.0289217	0.0228482	0.1274	0.125519
chr10	69373574	69373672	4446435	0	+	0.438776	(0.408,0.44]	chr10	410265	36	INTRON	INTRON	HK1	ENSG00000156515.24	ENST00000436817.6:ENST00000360289.6:ENST00000448642.6:ENST00000643399.2:ENST00000298649.8:ENST00000359426.7:ENST00000493591.6:ENST00000494253.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	29	2	2.27698	2.28634	2.2957	0.0583528	0.0516458	0.176696	0.167723
chr11	3867245	3867306	4723577	0	+	0.409836	(0.408,0.44]	chr11	437122	1	SS5_PROX	SS5_PROX:INTRON	STIM1	ENSG00000167323.12	ENST00000525403.5:ENST00000526596.2:ENST00000300737.8:ENST00000616714.4:ENST00000527651.5:ENST00000532610.5	protein_coding	protein_coding	protein_coding	protein_coding	2	29	2	2.27698	2.28634	2.2957	0.0583528	0.0516458	0.176696	0.167723
chr13	110907921	110908021	5650578	0	-	0.43	(0.408,0.44]	chr13	538387	14	INTRON	INTRON	ANKRD10	ENSG00000088448.14	ENST00000267339.6:ENST00000489973.6:ENST00000310847.8:ENST00000465753.1:ENST00000494859.5:ENST00000460846.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	29	2	2.27698	2.28634	2.2957	0.0583528	0.0516458	0.176696	0.167723
chr16	53073669	53073769	6350905	0	+	0.44	(0.408,0.44]	chr16	609666	182	INTRON	INTRON	CHD9	ENSG00000177200.18	ENST00000447540.6:ENST00000566029.5:ENST00000615216.4:ENST00000561869.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	29	2	2.27698	2.28634	2.2957	0.0583528	0.0516458	0.176696	0.167723
chr17	16352526	16352626	6735377	0	-	0.42	(0.408,0.44]	chr17	660796	1	SS5_PROX	SS5_PROX:INTRON	CENPV	ENSG00000166582.11	ENST00000476243.5:ENST00000299736.5:ENST00000631687.2:ENST00000582062.1:ENST00000584214.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	29	2	2.27698	2.28634	2.2957	0.0583528	0.0516458	0.176696	0.167723
chr2	47803219	47803319	777244	0	+	0.41	(0.408,0.44]	chr2	87436	4	SS3_PROX	SS3_PROX:INTRON	MSH6	ENSG00000116062.18	ENST00000652107.1:ENST00000445503.5:ENST00000614496.4:ENST00000234420.11:ENST00000673637.1:ENST00000540021.6:ENST00000538136.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	29	2	2.27698	2.28634	2.2957	0.0583528	0.0516458	0.176696	0.167723
chr22	39510429	39510518	7515976	0	+	0.426966	(0.408,0.44]	chr22	767976	5	INTRON	INTRON	MIEF1	ENSG00000100335.15	ENST00000402881.5:ENST00000325301.7:ENST00000433117.6:ENST00000404569.5:ENST00000434364.5:ENST00000428069.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	29	2	2.27698	2.28634	2.2957	0.0583528	0.0516458	0.176696	0.167723
chr5	91108538	91108638	2426018	0	+	0.44	(0.408,0.44]	chr5	233308	58	INTRON	INTRON	ADGRV1	ENSG00000164199.18	ENST00000405460.9:ENST00000425867.3:ENST00000638510.1:ENST00000640407.1:ENST00000638990.1:ENST00000640815.1:ENST00000639821.1:ENST00000639530.1:ENST00000640256.1:ENST00000639212.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	29	2	2.27698	2.28634	2.2957	0.0583528	0.0516458	0.176696	0.167723
chr11	34082324	34082424	4767964	0	+	0.52	(0.515,0.57]	chr11	440985	1	SS3_PROX	SS3_PROX:INTRON	CAPRIN1	ENSG00000135387.21	ENST00000341394.9:ENST00000528856.5:ENST00000389645.7:ENST00000532820.5:ENST00000530820.5:ENST00000529307.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	62	2	1.94449	2.28633	2.62817	0.0122196	0.004048	0.0910127	0.0578376
chr11	57790411	57790505	4793419	0	+	0.606383	(0.57,1]	chr11	443728	9	INTRON	INTRON	ENSG00000288534:CTNND1	ENSG00000288534.1:ENSG00000198561.16	ENST00000673781.1:ENST00000673810.1:ENST00000674116.1:ENST00000674060.1:ENST00000524630.5:ENST00000529919.5:ENST00000533189.1:ENST00000682741.1:ENST00000358694.10:ENST00000361332.8:ENST00000361391.10:ENST00000361796.9:ENST00000415361.6:ENST00000426142.6:ENST00000428599.6:ENST00000525902.5:ENST00000526357.5:ENST00000526772.5:ENST00000527467.5:ENST00000528232.5:ENST00000528621.5:ENST00000529526.5:ENST00000529873.5:ENST00000529986.5:ENST00000530094.5:ENST00000530748.5:ENST00000531014.5:ENST00000532245.5:ENST00000532463.5:ENST00000532649.5:ENST00000532787.5:ENST00000532844.5:ENST00000533667.5:ENST00000534579.5:ENST00000399050.10:ENST00000526938.5:ENST00000531007.2:ENST00000674015.1:ENST00000673826.1:ENST00000673683.1:ENST00000674106.1:ENST00000530068.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	21	2	1.77365	2.28627	2.79889	0.0670385	0.0110274	0.183051	0.0927187
chr3	40536686	40536786	1402588	0	+	0.37	(0.35,0.378]	chr3	147394	37	UTR3	UTR3:EXON_MRNA:INTRON	ZNF621	ENSG00000172888.12	ENST00000310898.5:ENST00000339296.10:ENST00000490457.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	106	2	1.88357	2.286255	2.68894	0.0100866	0.00152848	0.0884696	0.0353936
chr5	10378170	10378258	2317892	0	+	0.306818	(0.28,0.32]	chr5	224617	3	SS5_PROX	SS5_PROX:INTRON	MARCHF6	ENSG00000145495.16	ENST00000274140.10:ENST00000449913.6:ENST00000502795.5:ENST00000511802.5:ENST00000503788.5:ENST00000640713.1:ENST00000510872.5:ENST00000507863.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	97	2	1.9021	2.286235	2.67037	0.0304779	0.00141946	0.130699	0.034662
chr16	11847343	11847417	6445854	0	-	0.432432	(0.408,0.44]	chr16	621011	1	SS5_PROX	SS5_PROX:INTRON	RSL1D1	ENSG00000171490.13	ENST00000571133.6:ENST00000396503.7:ENST00000573618.5:ENST00000355674.9:ENST00000573029.1:ENST00000573251.5:ENST00000570767.5:ENST00000572090.5:ENST00000571988.5:ENST00000573791.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	66	2	2.27464	2.286205	2.29777	0.0158016	0.0067764	0.109464	0.0711802
chr2	218595339	218595436	1018472	0	+	0.298969	(0.28,0.32]	chr2	108484	12	UTR3	UTR3:EXON_MRNA	CNOT9	ENSG00000144580.14	ENST00000542068.5:ENST00000273064.11	protein_coding	protein_coding	protein_coding	protein_coding	13	190	2	1.7699	2.28611	2.80232	0.00914806	3.09366e-4	0.0812949	0.0157609
chr3	47830779	47830866	1420256	0	+	0.574713	(0.57,1]	chr3	149237	1	EXON_LNCRNA	EXON_LNCRNA:INTRON	DHX30	ENSG00000132153.15	ENST00000395745.6:ENST00000445061.6:ENST00000441384.5:ENST00000348968.8:ENST00000446256.6:ENST00000619982.4:ENST00000457607.1:ENST00000470959.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	21	2	1.9042	2.286105	2.66801	0.0476976	0.0169968	0.153019	0.110899
chr7	12346852	12346950	3484839	0	-	0.27551	[0,0.28]	chr7	325854	5	INTRON	INTRON	VWDE	ENSG00000146530.15	ENST00000275358.8:ENST00000452576.6:ENST00000521169.5:ENST00000649524.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	168	2	1.66646	2.286105	2.90575	0.0162471	0.00111582	0.109464	0.0306655
chrX	154360687	154360747	7913655	0	-	0.666667	(0.57,1]	chrX	805755	1	SS3_PROX	SS3_PROX:INTRON	FLNA	ENSG00000196924.19	ENST00000420627.5:ENST00000422373.6:ENST00000360319.9:ENST00000369856.8:ENST00000369850.10:ENST00000676696.1:ENST00000610817.5:ENST00000673639.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	21	2	1.9042	2.286105	2.66801	0.0476976	0.0169968	0.153019	0.110899
chr1	44756537	44756637	92486	0	+	0.41	(0.408,0.44]	chr1	12298	3	SS5_PROX	SS5_PROX:INTRON	KIF2C	ENSG00000142945.13	ENST00000452259.5:ENST00000493027.5:ENST00000372224.9:ENST00000372217.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	39	2	1.85305	2.28608	2.71911	0.0543543	0.0189489	0.182243	0.108861
chr14	60109402	60109500	5735550	0	+	0.428571	(0.408,0.44]	chr14	544742	12	UTR3	UTR3:EXON_MRNA:INTRON	PCNX4	ENSG00000126773.13	ENST00000317623.8:ENST00000391611.6:ENST00000406854.6:ENST00000406949.5:ENST00000556907.1:ENST00000555569.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	39	2	1.85305	2.28608	2.71911	0.0543543	0.0189489	0.182243	0.108861
chr9	91830287	91830387	4284065	0	-	0.42	(0.408,0.44]	chr9	393909	541	INTRON	INTRON	ROR2	ENSG00000169071.15	ENST00000375715.5:ENST00000375708.4:ENST00000550066.5:ENST00000495386.5:ENST00000546883.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	39	2	1.85305	2.28608	2.71911	0.0543543	0.0189489	0.182243	0.108861
chrX	48932974	48933073	7815823	0	-	0.414141	(0.408,0.44]	chrX	796844	66	INTRON	INTRON	OTUD5	ENSG00000068308.15	ENST00000376488.8:ENST00000396743.7:ENST00000455452.5:ENST00000156084.8:ENST00000428668.2:ENST00000484499.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	39	2	1.85305	2.28608	2.71911	0.0543543	0.0189489	0.182243	0.108861
chr10	49984886	49984985	4433071	0	+	0.383838	(0.378,0.408]	chr10	408731	21	INTRON	INTRON	TIMM23B-AGAP6:AGAP6	ENSG00000178440.8:ENSG00000204149.15	ENST00000651763.1:ENST00000651208.1:ENST00000618025.4	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	2	30	2	2.26252	2.286065	2.30961	0.056222	0.055088	0.18407	0.165463
chr10	50308744	50308840	4617522	0	-	0.40625	(0.378,0.408]	chr10	425386	2	INTRON	INTRON	SGMS1	ENSG00000198964.14	ENST00000429490.5:ENST00000361781.7	protein_coding	protein_coding	protein_coding	protein_coding	2	30	2	2.26252	2.286065	2.30961	0.056222	0.055088	0.18407	0.165463
chr14	101980950	101981050	5820391	0	+	0.4	(0.378,0.408]	chr14	551998	4	SS5_PROX	SS5_PROX:INTRON	DYNC1H1	ENSG00000197102.14	ENST00000360184.10:ENST00000684561.1:ENST00000680313.1:ENST00000679720.1:ENST00000680715.1:ENST00000681283.1:ENST00000681822.1:ENST00000679910.1:ENST00000681574.1:ENST00000645039.2:ENST00000645149.2:ENST00000680200.1:ENST00000680120.1:ENST00000644881.2:ENST00000681066.1:ENST00000680423.1:ENST00000681536.1:ENST00000679486.1:ENST00000681010.1:ENST00000679629.1:ENST00000681123.1:ENST00000680874.1:ENST00000680137.1:ENST00000643508.2:ENST00000680808.1:ENST00000681311.1:ENST00000681859.1:ENST00000643684.1:ENST00000643958.2:ENST00000680001.1:ENST00000681668.1:ENST00000645114.2:ENST00000681751.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	30	2	2.26252	2.286065	2.30961	0.056222	0.055088	0.18407	0.165463
chr16	135264	135363	6425734	0	-	0.393939	(0.378,0.408]	chr16	617388	43	INTRON	INTRON	NPRL3	ENSG00000103148.17	ENST00000611875.5:ENST00000622194.4:ENST00000621703.4:ENST00000399953.7:ENST00000457916.5:ENST00000483663.5:ENST00000422814.5:ENST00000468260.5:ENST00000456528.5:ENST00000419636.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	30	2	2.26252	2.286065	2.30961	0.056222	0.055088	0.18407	0.165463
chr17	61832139	61832239	6808620	0	-	0.39	(0.378,0.408]	chr17	672605	230	INTRON	INTRON	BRIP1	ENSG00000136492.10	ENST00000259008.7:ENST00000682755.1:ENST00000682453.1:ENST00000683039.1:ENST00000682989.1:ENST00000682589.1:ENST00000683235.1:ENST00000682477.1:ENST00000684584.1:ENST00000577598.5:ENST00000682066.1:ENST00000584322.2:ENST00000683381.1:ENST00000579028.2:ENST00000682611.1:ENST00000683692.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	30	2	2.26252	2.286065	2.30961	0.056222	0.055088	0.18407	0.165463
chr18	58099135	58099234	6915749	0	+	0.383838	(0.378,0.408]	chr18	684465	72	INTRON	INTRON	NEDD4L	ENSG00000049759.20	ENST00000400345.8:ENST00000356462.10:ENST00000674845.1:ENST00000589054.5:ENST00000676024.1:ENST00000382850.8:ENST00000256830.13:ENST00000590694.5:ENST00000676223.1:ENST00000675147.1:ENST00000585594.6:ENST00000591989.5:ENST00000591579.5:ENST00000592846.5:ENST00000675801.1:ENST00000674613.1:ENST00000585363.5:ENST00000588516.5:ENST00000456986.5:ENST00000675502.1:ENST00000675554.1:ENST00000675137.1:ENST00000587547.1:ENST00000675227.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	30	2	2.26252	2.286065	2.30961	0.056222	0.055088	0.18407	0.165463
chr2	26787782	26787881	715765	0	+	0.40404	(0.378,0.408]	chr2	82664	11	INTRON	INTRON	CENPA	ENSG00000115163.15	ENST00000475662.5:ENST00000472719.5:ENST00000335756.9:ENST00000233505.12:ENST00000419525.5:ENST00000460030.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	30	2	2.26252	2.286065	2.30961	0.056222	0.055088	0.18407	0.165463
chr22	28787813	28787912	7494010	0	+	0.383838	(0.378,0.408]	chr22	764605	16	UTR3	UTR3:EXON_MRNA	CCDC117	ENSG00000159873.10	ENST00000448492.6:ENST00000421503.6:ENST00000249064.9	protein_coding	protein_coding	protein_coding	protein_coding	2	30	2	2.26252	2.286065	2.30961	0.056222	0.055088	0.18407	0.165463
chr4	143402884	143402984	2054741	0	+	0.38	(0.378,0.408]	chr4	203752	65	INTRON	INTRON	GAB1	ENSG00000109458.9	ENST00000262995.8:ENST00000262994.9:ENST00000514639.5:ENST00000515366.5:ENST00000505913.5:ENST00000509992.1	protein_coding	protein_coding	protein_coding	protein_coding	2	30	2	2.26252	2.286065	2.30961	0.056222	0.055088	0.18407	0.165463
chr4	150891851	150891951	2270520	0	-	0.39	(0.378,0.408]	chr4	220841	187	INTRON	INTRON	LRBA	ENSG00000198589.14	ENST00000357115.9:ENST00000651943.2:ENST00000510413.5:ENST00000651035.1:ENST00000507224.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	30	2	2.26252	2.286065	2.30961	0.056222	0.055088	0.18407	0.165463
chr6	87528294	87528390	3152002	0	-	0.385417	(0.378,0.408]	chr6	294003	5	EXON_MRNA	EXON_MRNA:INTRON	RARS2	ENSG00000146282.19	ENST00000691533.1:ENST00000493269.2:ENST00000685069.1:ENST00000691725.1:ENST00000369536.10:ENST00000693431.1:ENST00000685408.1:ENST00000693327.1:ENST00000691205.1:ENST00000689174.1:ENST00000692684.1:ENST00000686988.1:ENST00000690622.1:ENST00000689206.1:ENST00000688532.1:ENST00000686154.1:ENST00000686407.1:ENST00000685701.1:ENST00000689561.1:ENST00000691238.1:ENST00000685336.1:ENST00000686284.1:ENST00000687586.1:ENST00000685376.1:ENST00000685881.1:ENST00000691815.1:ENST00000687090.1:ENST00000451155.2:ENST00000687437.1:ENST00000692394.1:ENST00000687729.1:ENST00000693605.1:ENST00000687909.1:ENST00000688391.1:ENST00000690884.1:ENST00000692843.1:ENST00000684790.1:ENST00000692270.1:ENST00000685219.1:ENST00000689952.1:ENST00000687579.1:ENST00000686857.1:ENST00000690205.1:ENST00000690705.1:ENST00000686371.1:ENST00000686142.1:ENST00000688106.1:ENST00000686196.1:ENST00000688842.1:ENST00000687078.1:ENST00000690555.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	30	2	2.26252	2.286065	2.30961	0.056222	0.055088	0.18407	0.165463
chr7	1959215	1959315	3464181	0	-	0.4	(0.378,0.408]	chr7	324001	11	INTRON	INTRON	MAD1L1	ENSG00000002822.16	ENST00000406869.5:ENST00000399654.6:ENST00000402746.5:ENST00000265854.12:ENST00000450235.5:ENST00000438959.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	30	2	2.26252	2.286065	2.30961	0.056222	0.055088	0.18407	0.165463
chr7	105298101	105298169	3602995	0	-	0.397059	(0.378,0.408]	chr7	336150	2	INTRON	INTRON	SRPK2	ENSG00000135250.17	ENST00000393651.8:ENST00000489828.5:ENST00000482897.5:ENST00000460391.5:ENST00000462282.5:ENST00000465112.5:ENST00000482862.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	30	2	2.26252	2.286065	2.30961	0.056222	0.055088	0.18407	0.165463
chr7	156769979	156770079	3686775	0	-	0.39	(0.378,0.408]	chr7	342051	58	INTRON	INTRON	LMBR1	ENSG00000105983.23	ENST00000353442.10:ENST00000448926.5:ENST00000415428.5:ENST00000454132.5:ENST00000434503.5:ENST00000430278.5:ENST00000434278.5:ENST00000444719.5:ENST00000461469.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	30	2	2.26252	2.286065	2.30961	0.056222	0.055088	0.18407	0.165463
chr9	37153440	37153540	4117988	0	+	0.48	(0.476,0.515]	chr9	375382	56	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000322831.6:ENST00000461038.5:ENST00000488607.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	21	241	2	1.8537	2.2860449999999997	2.71839	0.00229179	3.02984e-5	0.0428185	0.00439279
chr11	9580442	9580540	4730867	0	+	0.44898	(0.44,0.476]	chr11	438106	27	EXON_MRNA	EXON_MRNA:INTRON	WEE1	ENSG00000166483.12	ENST00000680141.1:ENST00000450114.7:ENST00000299613.10:ENST00000524549.1:ENST00000681684.1:ENST00000524612.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	27	318	2	2.19763	2.285895	2.37416	3.81996e-4	5.80889e-5	0.0181392	0.00624184
chr12	116249391	116249491	5425268	0	-	0.33	(0.32,0.35]	chr12	518291	113	INTRON	INTRON	MED13L	ENSG00000123066.9	ENST00000281928.9:ENST00000650226.1:ENST00000548743.2:ENST00000551197.2:ENST00000650375.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	61	2	1.94202	2.28586	2.6297	0.0486128	0.00476699	0.153946	0.0636201
chr10	73381391	73381490	4649081	0	-	0.393939	(0.378,0.408]	chr10	427753	8	INTRON	INTRON	ANXA7	ENSG00000138279.16	ENST00000372921.10:ENST00000372919.8	protein_coding	protein_coding	protein_coding	protein_coding	4	55	2	1.8252	2.28583	2.74646	0.0619563	0.00271684	0.174514	0.0481064
chr4	70912743	70912843	1970609	0	+	0.49	(0.476,0.515]	chr4	197571	98	INTRON	INTRON	MOB1B	ENSG00000173542.9	ENST00000502869.5:ENST00000509041.5:ENST00000309395.7:ENST00000396051.2:ENST00000511449.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	18	179	2	1.60274	2.28583	2.96892	0.00540149	1.20811e-4	0.066545000000000007	0.00992813
chr8	105515896	105515996	3839221	0	+	0.4	(0.378,0.408]	chr8	354063	643	INTRON	INTRON	ZFPM2	ENSG00000169946.14	ENST00000407775.7:ENST00000520492.5:ENST00000520027.5:ENST00000524235.5:ENST00000511341.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	55	2	1.8252	2.28583	2.74646	0.0619563	0.00271684	0.174514	0.0481064
chr6	135028888	135028987	3225208	0	-	0.343434	(0.32,0.35]	chr6	299841	18	INTRON	INTRON	HBS1L	ENSG00000112339.15	ENST00000367837.10:ENST00000415177.6:ENST00000367826.6:ENST00000533274.5:ENST00000526100.5:ENST00000314674.7:ENST00000524715.5:ENST00000529882.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	73	2	2.2643	2.285805	2.30731	0.0176772	0.00712852	0.10525	0.0756118
chr1	1776394	1776494	361716	0	-	0.42	(0.408,0.44]	chr1	42219	106	INTRON	INTRON	NADK	ENSG00000008130.15	ENST00000378625.5:ENST00000341991.7:ENST00000341426.9:ENST00000492845.6:ENST00000492768.5:ENST00000460602.5:ENST00000464373.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	63	2	1.92319	2.2857399999999997	2.64829	0.0247322	0.00400062	0.12011	0.057767
chr19	45180204	45180303	7079619	0	+	0.414141	(0.408,0.44]	chr19	708129	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	BLOC1S3	ENSG00000189114.8	ENST00000433642.3:ENST00000592910.1:ENST00000593083.1:ENST00000588362.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	63	2	1.92319	2.2857399999999997	2.64829	0.0247322	0.00400062	0.12011	0.057767
chr1	235267048	235267148	663251	0	-	0.46	(0.44,0.476]	chr1	78552	59	INTRON	INTRON	ARID4B	ENSG00000054267.22	ENST00000349213.7:ENST00000366603.6:ENST00000264183.9:ENST00000421364.5:ENST00000491632.5:ENST00000418304.1:ENST00000466653.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	39	2	2.27304	2.28573	2.29842	0.0552483	0.0158915	0.165463	0.109464
chr14	100341197	100341297	5968535	0	-	0.46	(0.44,0.476]	chr14	567055	36	INTRON	INTRON	WARS1	ENSG00000140105.18	ENST00000392882.7:ENST00000358655.8:ENST00000355338.6:ENST00000344102.9:ENST00000557135.5:ENST00000556645.5:ENST00000554950.1:ENST00000557614.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	39	2	2.27304	2.28573	2.29842	0.0552483	0.0158915	0.165463	0.109464
chr17	47556214	47556313	6621838	0	+	0.474747	(0.44,0.476]	chr17	645851	75	INTRON	INTRON	NPEPPS	ENSG00000141279.17	ENST00000525007.5:ENST00000525037.5:ENST00000677710.1:ENST00000530173.6:ENST00000526247.6:ENST00000677226.1:ENST00000322157.9:ENST00000678461.1:ENST00000532729.6:ENST00000533573.5:ENST00000677120.1:ENST00000678909.1:ENST00000678496.1:ENST00000678262.1:ENST00000677370.1:ENST00000677664.1:ENST00000528751.6:ENST00000527298.5:ENST00000534691.1:ENST00000602788.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	39	2	2.27304	2.28573	2.29842	0.0552483	0.0158915	0.165463	0.109464
chr15	84983347	84983447	6088945	0	+	0.35	(0.32,0.35]	chr15	579504	6	INTRON	INTRON	PDE8A	ENSG00000073417.15	ENST00000310298.8:ENST00000557957.5:ENST00000394553.6:ENST00000339708.9:ENST00000478717.5:ENST00000485596.5:ENST00000559742.5:ENST00000559086.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	54	2	1.67393	2.28568	2.89743	0.0496128	0.0127608	0.174685	0.0926667
chr22	21431110	21431210	7481310	0	+	0.56	(0.515,0.57]	chr22	763209	100	INTRON	INTRON	HIC2	ENSG00000169635.10	ENST00000407464.7:ENST00000407598.2	protein_coding	protein_coding	protein_coding	protein_coding	8	85	2	2.16051	2.285665	2.41082	0.0046825	0.00167359	0.0631419	0.0370386
chr2	181905044	181905142	937088	0	+	0.459184	(0.44,0.476]	chr2	102703	22	INTRON	INTRON	ITPRID2	ENSG00000138434.17	ENST00000431877.7:ENST00000320370.11:ENST00000409001.5:ENST00000440623.5:ENST00000454579.5:ENST00000416081.5:ENST00000491720.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	81	2	1.7899	2.285595	2.78129	0.0158205	0.00229634	0.101453	0.0439319
chr3	6550198	6550298	1356743	0	+	0.25	[0,0.28]	chr3	142508	371	INTRON	INTRON	ENSG00000189229	ENSG00000189229.12	ENST00000660158.1:ENST00000433639.1:ENST00000655754.1:ENST00000653839.1:ENST00000662846.1:ENST00000659876.1:ENST00000414438.2:ENST00000658468.1:ENST00000414603.1:ENST00000669512.1:ENST00000667028.1:ENST00000655541.1:ENST00000668643.1:ENST00000671568.1:ENST00000671036.1:ENST00000669798.1:ENST00000655753.1:ENST00000655856.1:ENST00000658398.1:ENST00000661518.1:ENST00000661279.1:ENST00000655495.1:ENST00000663041.1:ENST00000659827.1:ENST00000667716.1:ENST00000662508.1:ENST00000668416.1:ENST00000658133.1:ENST00000659651.1:ENST00000342990.4:ENST00000660054.1:ENST00000671370.1	lncRNA	lncRNA	lncRNA	lncRNA	16	264	2	1.95095	2.285575	2.6202	0.00248907	0.00107325	0.0461709	0.0301344
chr3	10150354	10150452	1363203	0	+	0.571429	(0.57,1]	chr3	143688	5	UTR3	UTR3:EXON_MRNA	VHL	ENSG00000134086.9	ENST00000696153.1:ENST00000256474.3:ENST00000696142.1:ENST00000345392.2:ENST00000696143.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	57	2	1.99245	2.285555	2.57866	0.00568465	5.14593e-4	0.0678837	0.0208667
chr3	47682291	47682389	1684065	0	-	0.357143	(0.35,0.378]	chr3	172040	14	INTRON	INTRON	SMARCC1	ENSG00000173473.11	ENST00000254480.10:ENST00000425518.5:ENST00000462198.5:ENST00000485737.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	94	2	2.23309	2.2855049999999997	2.33792	0.00930277	0.0024225	0.0817766	0.0454587
chr20	31768167	31768265	7253953	0	+	0.510204	(0.476,0.515]	chr20	736751	11	INTRON	INTRON	TPX2	ENSG00000088325.16	ENST00000340513.4:ENST00000300403.11	protein_coding	protein_coding	protein_coding	protein_coding	3	40	2	2.13854	2.2854799999999997	2.43242	0.0776563	0.0091895	0.196285	0.0855292
chr1	247188142	247188238	683885	0	-	0.25	[0,0.28]	chr1	80179	10	EXON_LNCRNA	EXON_LNCRNA	ENSG00000259865	ENSG00000259865.1	ENST00000566446.1	lncRNA	lncRNA	lncRNA	lncRNA	4	77	2	1.812	2.285435	2.75887	0.0729149	0.00360252	0.189235	0.0552588
chr3	185796568	185796668	1886064	0	-	0.27	[0,0.28]	chr3	188573	979	INTRON	INTRON	IGF2BP2	ENSG00000073792.16	ENST00000382199.7:ENST00000346192.7:ENST00000457616.6:ENST00000421047.3:ENST00000461957.5:ENST00000493302.5:ENST00000466476.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	77	2	1.812	2.285435	2.75887	0.0729149	0.00360252	0.189235	0.0552588
chr10	58270699	58270798	4435055	0	+	0.313131	(0.28,0.32]	chr10	409058	10	INTRON	INTRON	CISD1	ENSG00000122873.12	ENST00000333926.6:ENST00000464703.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	36	2	2.18975	2.28538	2.38101	0.0776042	0.0456017	0.196285	0.164236
chr10	119164901	119165001	4705189	0	-	0.32	(0.28,0.32]	chr10	434094	3	SS5_PROX	SS5_PROX:INTRON	SFXN4	ENSG00000183605.17	ENST00000355697.7:ENST00000461438.5:ENST00000369131.8:ENST00000466218.5:ENST00000419372.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	36	2	2.18975	2.28538	2.38101	0.0776042	0.0456017	0.196285	0.164236
chr11	28093658	28093754	4938301	0	-	0.291667	(0.28,0.32]	chr11	462511	18	INTRON	INTRON	KIF18A	ENSG00000121621.7	ENST00000263181.7:ENST00000533466.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	36	2	2.18975	2.28538	2.38101	0.0776042	0.0456017	0.196285	0.164236
chr14	96868692	96868792	5811593	0	+	0.3	(0.28,0.32]	chr14	551089	39	EXON_MRNA	EXON_MRNA:INTRON	VRK1	ENSG00000100749.9	ENST00000553683.2:ENST00000680538.1:ENST00000681195.1:ENST00000681524.1:ENST00000680084.1:ENST00000679533.1:ENST00000681598.1:ENST00000679727.1:ENST00000679758.1:ENST00000679977.1:ENST00000680387.1:ENST00000680335.1:ENST00000680683.1:ENST00000681474.1:ENST00000216639.8:ENST00000681363.1:ENST00000681538.1:ENST00000680922.1:ENST00000679903.1:ENST00000681101.1:ENST00000681419.1:ENST00000679941.1:ENST00000680849.1:ENST00000679770.1:ENST00000681493.1:ENST00000681778.1:ENST00000680993.1:ENST00000681355.1:ENST00000681695.1:ENST00000681344.1:ENST00000680007.1:ENST00000679918.1:ENST00000679816.1:ENST00000680756.1:ENST00000681249.1:ENST00000680526.1:ENST00000679365.1:ENST00000680851.1:ENST00000679506.1:ENST00000679650.1:ENST00000679462.1:ENST00000680724.1:ENST00000681061.1:ENST00000681677.1:ENST00000679843.1:ENST00000555067.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	36	2	2.18975	2.28538	2.38101	0.0776042	0.0456017	0.196285	0.164236
chr21	22221512	22221612	7384583	0	+	0.32	(0.28,0.32]	chr21	752727	83	INTRON	INTRON	ENSG00000226043	ENSG00000226043.2	ENST00000667099.1:ENST00000654607.1:ENST00000444130.1	lncRNA	lncRNA	lncRNA	lncRNA	2	36	2	2.18975	2.28538	2.38101	0.0776042	0.0456017	0.196285	0.164236
chr22	19958019	19958119	7477567	0	+	0.3	(0.28,0.32]	chr22	762571	37	INTRON	INTRON	COMT	ENSG00000093010.15	ENST00000676678.1:ENST00000403184.5:ENST00000361682.11:ENST00000403710.5:ENST00000407537.5:ENST00000467943.5:ENST00000678868.1:ENST00000678769.1:ENST00000428707.2:ENST00000412786.5:ENST00000207636.9:ENST00000406520.7:ENST00000678255.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	36	2	2.18975	2.28538	2.38101	0.0776042	0.0456017	0.196285	0.164236
chr6	38681511	38681611	3090057	0	-	0.31	(0.28,0.32]	chr6	289104	1	SS5_PROX	SS5_PROX:INTRON	GLO1	ENSG00000124767.7	ENST00000373365.5:ENST00000470973.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	36	2	2.18975	2.28538	2.38101	0.0776042	0.0456017	0.196285	0.164236
chr1	174434982	174435082	259880	0	+	0.37	(0.35,0.378]	chr1	30818	405	INTRON	INTRON	RABGAP1L	ENSG00000152061.24	ENST00000357444.10:ENST00000251507.8:ENST00000681986.1:ENST00000367690.5:ENST00000526253.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	52	2	1.70607	2.28529	2.86451	0.0482819	0.0109111	0.153283	0.0923273
chr15	92994681	92994779	6104680	0	+	0.326531	(0.32,0.35]	chr15	581581	13	INTRON	INTRON	CHD2	ENSG00000173575.22	ENST00000626874.2:ENST00000394196.9:ENST00000637572.1:ENST00000636881.1:ENST00000636306.1:ENST00000637789.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	69	2	1.57911	2.28518	2.99125	0.0313129	0.00958447	0.144381	0.0820838
chr7	23199157	23199257	3289809	0	+	0.53	(0.515,0.57]	chr7	305574	3	SS3_PROX	SS3_PROX:INTRON	NUP42	ENSG00000136243.18	ENST00000485250.5:ENST00000438012.5:ENST00000258742.10:ENST00000413919.1:ENST00000437140.5:ENST00000477844.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	40	2	1.60221	2.2851749999999997	2.96814	0.0581855	0.00756432	0.188704	0.0749063
chr22	40080971	40081071	7517209	0	+	0.49	(0.476,0.515]	chr22	768084	350	INTRON	INTRON	TNRC6B	ENSG00000100354.21	ENST00000301923.13:ENST00000441751.5:ENST00000402203.5	protein_coding	protein_coding	protein_coding	protein_coding	4	47	2	1.69138	2.285085	2.87879	0.0481165	0.00999149	0.153019	0.0879541
chr3	195669637	195669737	1593549	0	+	0.49	(0.476,0.515]	chr3	165039	6	INTRON	INTRON	MUC20-OT1	ENSG00000242086.8	ENST00000429897.5:ENST00000453324.5:ENST00000445430.5	lncRNA	lncRNA	lncRNA	lncRNA	4	47	2	1.69138	2.285085	2.87879	0.0481165	0.00999149	0.153019	0.0879541
chr3	43706458	43706557	1410335	0	+	0.434343	(0.408,0.44]	chr3	147937	35	INTRON	INTRON	ABHD5	ENSG00000011198.10	ENST00000643520.1:ENST00000458276.7:ENST00000649763.1:ENST00000643140.1:ENST00000643500.1:ENST00000644371.2:ENST00000013894.3:ENST00000646378.1:ENST00000643477.1:ENST00000646799.1:ENST00000454293.2:ENST00000642351.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	13	163	2	1.80815	2.2850799999999998	2.76201	0.0109379	3.4952e-5	0.0873034	0.00471138
chr7	65004335	65004431	3537676	0	-	0.364583	(0.35,0.378]	chr7	329952	8	EXON_LNCRNA	EXON_LNCRNA:INTRON	ZNF117:ERV3-1	ENSG00000152926.16:ENSG00000213462.5	ENST00000487644.1:ENST00000394323.3:ENST00000528878.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	9	116	2	2.27534	2.2850799999999998	2.29482	0.00743782	0.00112024	0.0746192	0.0307546
chr5	181255718	181255816	2563424	0	+	0.346939	(0.32,0.35]	chr5	245313	1	EXON_MRNA	EXON_MRNA:INTRON	CTC-338M12.4	ENSG00000233937.8	ENST00000506340.3:ENST00000505151.6:ENST00000511331.5:ENST00000417281.2:ENST00000599439.2	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	6	88	2	2.09793	2.285065	2.4722	0.0156788	0.00307237	0.101453	0.0509893
chr1	153893383	153893483	557470	0	-	0.5	(0.476,0.515]	chr1	65989	65	INTRON	INTRON	GATAD2B	ENSG00000143614.10	ENST00000368655.5:ENST00000634544.1:ENST00000634408.1:ENST00000634401.1:ENST00000634791.1:ENST00000636014.1:ENST00000637331.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	95	2	2.18874	2.285015	2.38129	0.00474233	0.00255859	0.0600445	0.0466761
chr6	87223644	87223741	2913946	0	+	0.298969	(0.28,0.32]	chr6	275310	10	EXON_LNCRNA	EXON_LNCRNA:INTRON	ZNF292	ENSG00000188994.13	ENST00000369577.8:ENST00000369578.6:ENST00000518845.1:ENST00000339907.8:ENST00000496806.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	105	2	1.82574	2.28496	2.74418	0.0174786	0.00328589	0.10482	0.0527031
chr1	31030461	31030561	412543	0	-	0.34	(0.32,0.35]	chr1	49733	12	INTRON	INTRON	PUM1	ENSG00000134644.16	ENST00000426105.7:ENST00000373747.7:ENST00000257075.9:ENST00000424085.6:ENST00000525843.5:ENST00000440538.6:ENST00000373741.8:ENST00000373742.6:ENST00000526215.5:ENST00000525948.5:ENST00000480602.1:ENST00000524516.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	72	2	1.8807	2.284955	2.68921	0.0230336	0.0106415	0.118056	0.0915714
chr2	10657241	10657341	1066075	0	-	0.47	(0.44,0.476]	chr2	113743	1	SS5_PROX	SS5_PROX:INTRON	NOL10	ENSG00000115761.17	ENST00000695464.1:ENST00000695470.1:ENST00000695467.1:ENST00000695468.1:ENST00000695469.1:ENST00000381685.10:ENST00000695471.1:ENST00000345985.7:ENST00000538384.5:ENST00000695472.1:ENST00000695473.1:ENST00000695475.1:ENST00000695476.1:ENST00000695477.1:ENST00000695478.1:ENST00000695479.1:ENST00000431319.2:ENST00000695480.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	50	2	1.98938	2.284855	2.58033	0.0247511	0.0198602	0.131869	0.109608
chr15	25438238	25438332	6121835	0	-	0.691489	(0.57,1]	chr15	582940	3	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	UBE3A	ENSG00000114062.22	ENST00000648336.2:ENST00000438097.6:ENST00000635914.1:ENST00000638155.1:ENST00000637886.1:ENST00000638011.1:ENST00000649550.1:ENST00000650110.1:ENST00000630424.2:ENST00000566215.5:ENST00000428984.6:ENST00000675177.1:ENST00000675593.1:ENST00000625778.3:ENST00000675000.1:ENST00000626793.2:ENST00000628733.2:ENST00000630907.2:ENST00000675038.1:ENST00000629886.2:ENST00000628267.2:ENST00000629252.2:ENST00000625681.2:ENST00000627018.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	39	2	2.18579	2.28485	2.38391	0.0104374	0.00400391	0.0902296	0.0551303
chrX	113830099	113830199	7866340	0	-	0.45	(0.44,0.476]	chrX	801544	2139	EXON_LNCRNA	EXON_LNCRNA:INTRON	XACT	ENSG00000241743.4	ENST00000468762.3:ENST00000674361.1	lncRNA	lncRNA	lncRNA	lncRNA	9	77	2	1.11013	2.28485	3.45957	0.0787241	0.00106385	0.198576	0.0300133
chr1	52886455	52886555	105354	0	+	0.37	(0.35,0.378]	chr1	13781	1	SS3_PROX	SS3_PROX:INTRON	ZYG11A	ENSG00000203995.10	ENST00000371532.5:ENST00000612017.4:ENST00000371528.2	protein_coding	protein_coding	protein_coding	protein_coding	6	66	2	1.3017	2.28482	3.26794	0.0757564	0.00257067	0.194427	0.0466761
chr22	19492636	19492735	7476963	0	+	0.333333	(0.32,0.35]	chr22	762407	83	INTRON	INTRON	CDC45	ENSG00000093009.11	ENST00000407835.6:ENST00000437685.6:ENST00000483431.5:ENST00000438587.6:ENST00000672837.1:ENST00000263201.7:ENST00000404724.7:ENST00000487669.5:ENST00000428937.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	101	2	1.97378	2.2847999999999997	2.59582	0.0140469	0.00178944	0.0959618	0.0392749
chr2	31915532	31915632	1090160	0	-	0.3	(0.28,0.32]	chr2	116879	219	INTRON	INTRON	MEMO1:DPY30	ENSG00000162959.14:ENSG00000162961.14	ENST00000295065.9:ENST00000446765.5:ENST00000404530.6:ENST00000379383.7:ENST00000490459.5:ENST00000426310.6:ENST00000422936.5:ENST00000413686.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	80	2	1.72279	2.28475	2.84671	0.0496859	0.00216662	0.156383	0.0434015
chr14	102142770	102142870	5821311	0	+	0.22	[0,0.28]	chr14	552333	22	INTRON	INTRON	WDR20	ENSG00000140153.18	ENST00000557485.5:ENST00000335263.9:ENST00000424963.6:ENST00000322340.9:ENST00000556807.1:ENST00000555879.5:ENST00000561154.1:ENST00000342702.8:ENST00000558567.5:ENST00000299135.6:ENST00000454394.2:ENST00000556094.1:ENST00000556511.2:ENST00000557186.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	67	2	1.88025	2.284715	2.68918	0.029906	0.0275571	0.142135	0.123904
chr12	28191244	28191334	5100276	0	+	0.411111	(0.408,0.44]	chr12	481895	1	UTR5	UTR5:EXON_MRNA:INTRON	CCDC91	ENSG00000123106.11	ENST00000540794.5:ENST00000538586.5:ENST00000536154.5:ENST00000535520.5:ENST00000539107.5:ENST00000544649.5:ENST00000545336.5:ENST00000536442.6:ENST00000544780.5:ENST00000543534.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	47	2	1.9831	2.28467	2.58624	0.0273686	0.018491	0.123904	0.116694
chr10	1007904	1007996	4379197	0	+	0.315217	(0.28,0.32]	chr10	403859	4	INTRON	INTRON	GTPBP4	ENSG00000107937.19	ENST00000360803.9:ENST00000491635.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	49	2	2.24061	2.28466	2.32871	0.0581621	0.0194267	0.167723	0.119831
chr1	31292506	31292576	413248	0	-	0.485714	(0.476,0.515]	chr1	49809	1	INTRON	INTRON	SNRNP40	ENSG00000060688.13	ENST00000263694.9	protein_coding	protein_coding	protein_coding	protein_coding	4	48	2	2.16306	2.2845700000000004	2.40608	0.0425709	0.00973468	0.148082	0.0877284
chr20	35069912	35070011	7332676	0	-	0.454545	(0.44,0.476]	chr20	746967	1	INTRON	INTRON	TRPC4AP	ENSG00000100991.12	ENST00000252015.3:ENST00000451813.6	protein_coding	protein_coding	protein_coding	protein_coding	5	63	2	1.66462	2.28451	2.9044	0.0520247	0.00132926	0.159508	0.0335085
chr17	81853503	81853603	6850041	0	-	0.48	(0.476,0.515]	chr17	678343	1	SS3_PROX	SS3_PROX:INTRON	P4HB	ENSG00000185624.16	ENST00000680083.1:ENST00000680416.1:ENST00000575069.6:ENST00000681030.1:ENST00000680884.1:ENST00000681161.1:ENST00000681515.1:ENST00000679470.1:ENST00000571617.2:ENST00000679688.1:ENST00000680226.1:ENST00000680400.1:ENST00000574914.2:ENST00000331483.9:ENST00000680914.1:ENST00000680593.1:ENST00000681420.1:ENST00000681693.1:ENST00000576390.6:ENST00000681835.1:ENST00000681954.1:ENST00000681566.1:ENST00000680076.1:ENST00000680105.1:ENST00000680368.1:ENST00000681872.1:ENST00000466567.3:ENST00000679396.1:ENST00000415593.6:ENST00000679889.1:ENST00000681571.1:ENST00000680719.1:ENST00000680191.1:ENST00000680547.1:ENST00000680799.1:ENST00000680208.1:ENST00000679439.1:ENST00000439918.7:ENST00000472244.6:ENST00000681031.1:ENST00000680846.1:ENST00000681068.1:ENST00000477607.7:ENST00000679366.1:ENST00000681020.1:ENST00000681614.1:ENST00000681485.1:ENST00000679628.1:ENST00000679455.1:ENST00000680259.1:ENST00000680559.1:ENST00000680909.1:ENST00000681760.1:ENST00000681933.1:ENST00000570907.6:ENST00000680732.1:ENST00000680838.1:ENST00000680847.1:ENST00000574007.6:ENST00000573778.7:ENST00000478034.5:ENST00000576380.6:ENST00000576052.2:ENST00000471535.2:ENST00000576541.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	95	2	1.84672	2.2845	2.72228	0.0126682	8.52725e-4	0.0926667	0.0264928
chr10	3120444	3120544	4382077	0	+	0.39	(0.378,0.408]	chr10	404145	4	SS5_PROX	SS5_PROX:INTRON	PFKP	ENSG00000067057.18	ENST00000381125.9:ENST00000381075.7:ENST00000678206.1:ENST00000678089.1:ENST00000676796.1:ENST00000415005.6:ENST00000413079.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	65	2	1.86598	2.2844800000000003	2.70298	0.0300232	0.00325723	0.129138	0.0524329
chr6	147678448	147678548	2990780	0	+	0.37	(0.35,0.378]	chr6	280163	19	INTRON	INTRON	ENSG00000227681	ENSG00000227681.5	ENST00000427015.1:ENST00000432506.5:ENST00000442094.5	lncRNA	lncRNA	lncRNA	lncRNA	4	57	2	2.28125	2.284475	2.2877	0.0182271	0.0155765	0.109411	0.107842
chr4	24530512	24530604	2118456	0	-	0.445652	(0.44,0.476]	chr4	209191	9	EXON_LNCRNA	EXON_LNCRNA:INTRON	DHX15	ENSG00000109606.13	ENST00000510645.5:ENST00000336812.5:ENST00000508032.5:ENST00000512903.1:ENST00000513036.5:ENST00000508368.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	104	2	2.06139	2.284365	2.50734	0.00297288	0.00288299	0.0501309	0.0475859
chr21	31697150	31697250	7437472	0	-	0.29	(0.28,0.32]	chr21	758654	4	SS3_PROX	SS3_PROX:INTRON	SCAF4	ENSG00000156304.15	ENST00000286835.12:ENST00000399804.5:ENST00000434667.3:ENST00000467731.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	66	2	2.14002	2.28435	2.42868	0.0304107	0.0105331	0.130461	0.0908969
chr11	67133367	67133466	4812587	0	+	0.484848	(0.476,0.515]	chr11	448106	9	INTRON	INTRON	KDM2A	ENSG00000173120.15	ENST00000529006.7:ENST00000398645.6:ENST00000532436.5:ENST00000527157.1:ENST00000308783.9	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	62	2	2.25138	2.28432	2.31726	0.015077	0.00692374	0.0994339	0.0753208
chr19	15311041	15311141	7147191	0	-	0.51	(0.476,0.515]	chr19	721965	307	INTRON	INTRON	BRD4	ENSG00000141867.19	ENST00000679869.1:ENST00000360016.9:ENST00000594841.5:ENST00000597315.5:ENST00000601941.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	62	2	2.25138	2.28432	2.31726	0.015077	0.00692374	0.0994339	0.0753208
chr7	107523736	107523836	3612623	0	-	0.49	(0.476,0.515]	chr7	336698	429	INTRON	INTRON	COG5	ENSG00000164597.15	ENST00000297135.9:ENST00000347053.8:ENST00000393603.7:ENST00000475638.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	86	2	1.62997	2.28428	2.93859	0.018725	0.00143107	0.117523	0.0340925
chr9	120773140	120773240	4335256	0	-	0.41	(0.408,0.44]	chr9	398234	3	SS3_PROX	SS3_PROX:INTRON	FBXW2	ENSG00000119402.18	ENST00000493559.1:ENST00000684405.1:ENST00000684001.1:ENST00000684047.1:ENST00000608872.6:ENST00000453291.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	10	123	2	2.15055	2.284255	2.41796	0.00257687	0.0015483	0.0451926	0.0363194
chr7	64800567	64800667	3320406	0	+	0.31	(0.28,0.32]	chr7	308703	56	INTRON	INTRON	ZNF138	ENSG00000197008.10	ENST00000359735.7:ENST00000440155.6:ENST00000494380.5:ENST00000307355.12:ENST00000437743.1:ENST00000440598.2:ENST00000430838.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	49	2	1.83771	2.28424	2.73077	0.0591725	0.0220748	0.189982	0.115395
chr8	23563107	23563207	3715441	0	+	0.32	(0.28,0.32]	chr8	345227	195	INTRON	INTRON	SLC25A37	ENSG00000147454.14	ENST00000519973.6:ENST00000290075.10:ENST00000417331.6:ENST00000518881.5:ENST00000520654.1:ENST00000523930.1:ENST00000523883.5:ENST00000517923.1:ENST00000520949.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	49	2	1.83771	2.28424	2.73077	0.0591725	0.0220748	0.189982	0.115395
chr2	214808911	214809011	1326181	0	-	0.54	(0.515,0.57]	chr2	138640	1	SS5_PROX	SS5_PROX:INTRON	BARD1	ENSG00000138376.11	ENST00000260947.9:ENST00000617164.5:ENST00000619009.5:ENST00000613374.5:ENST00000613706.5:ENST00000421162.2:ENST00000613192.2:ENST00000620057.4:ENST00000455743.5:ENST00000471787.1:ENST00000479904.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	68	2	1.60369	2.28418	2.96467	0.027865	8.94279e-4	0.124158	0.0273458
chr11	768843	768941	4889642	0	-	0.540816	(0.515,0.57]	chr11	457802	16	UTR3	UTR3:EXON_MRNA:INTRON	GATD1	ENSG00000177225.17	ENST00000465313.6:ENST00000319863.13:ENST00000397472.6:ENST00000528309.5:ENST00000354286.8:ENST00000526325.5:ENST00000526650.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	16	118	2	1.29594	2.284175	3.27241	0.0219961	1.80226e-4	0.115395	0.0116696
chrX	47149193	47149292	7655117	0	+	0.525253	(0.515,0.57]	chrX	783085	13	INTRON	INTRON	RBM10	ENSG00000182872.16	ENST00000377604.8:ENST00000345781.10:ENST00000628161.2:ENST00000329236.8	protein_coding	protein_coding	protein_coding	protein_coding	6	62	2	1.68552	2.2840949999999998	2.88267	0.0292028	0.00152842	0.141637	0.0353936
chr7	5712430	5712522	3474261	0	-	0.413043	(0.408,0.44]	chr7	324828	2	SS5_PROX	SS5_PROX:INTRON	RNF216	ENSG00000011275.19	ENST00000425013.6:ENST00000389902.8:ENST00000389900.8:ENST00000484458.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	39	2	1.74775	2.284085	2.82042	0.0735403	0.0120121	0.190238	0.0962115
chr16	8809418	8809515	6284775	0	+	0.402062	(0.378,0.408]	chr16	601833	20	EXON_MRNA	EXON_MRNA:INTRON	PMM2	ENSG00000140650.13	ENST00000566983.5:ENST00000682008.1:ENST00000683435.1:ENST00000683094.1:ENST00000566604.5:ENST00000570134.5:ENST00000268261.9:ENST00000683274.1:ENST00000682393.1:ENST00000566540.5:ENST00000562318.5:ENST00000565896.5:ENST00000568602.5:ENST00000570076.5:ENST00000569958.5:ENST00000565221.5:ENST00000564069.1:ENST00000567697.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	90	2	2.10212	2.28404	2.46596	0.0141232	0.00125753	0.0959618	0.03295
chr15	64557643	64557743	6045060	0	+	0.39	(0.378,0.408]	chr15	575696	547	INTRON	INTRON	ZNF609	ENSG00000180357.10	ENST00000326648.5:ENST00000558680.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	54	2	2.00398	2.28403	2.56408	0.0393906	0.00566993	0.143072	0.0678837
chr9	125305349	125305449	4198696	0	+	0.38	(0.378,0.408]	chr9	383179	2	SS5_PROX	SS5_PROX:INTRON	GAPVD1	ENSG00000165219.23	ENST00000497580.5:ENST00000297933.11:ENST00000394084.5:ENST00000470056.5:ENST00000394105.6:ENST00000394083.6:ENST00000495955.5:ENST00000467750.5:ENST00000394104.6:ENST00000312123.13:ENST00000431329.5:ENST00000436712.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	54	2	2.21238	2.283825	2.35527	0.0218124	0.0121511	0.11491	0.0963966
chr10	42809707	42809807	4428304	0	+	0.32	(0.28,0.32]	chr10	408133	71	INTRON	INTRON	BMS1	ENSG00000165733.8	ENST00000374518.6	protein_coding	protein_coding	protein_coding	protein_coding	6	96	2	2.06157	2.283795	2.50602	0.0189458	0.00290205	0.108861	0.0494641
chr4	1897936	1898034	1910840	0	+	0.357143	(0.35,0.378]	chr4	191727	37	INTRON	INTRON	NSD2	ENSG00000109685.19	ENST00000508803.6:ENST00000507820.5:ENST00000508355.5:ENST00000514045.5:ENST00000515806.1:ENST00000398261.6:ENST00000382891.9:ENST00000353275.9:ENST00000382892.6:ENST00000382895.7:ENST00000312087.10:ENST00000420906.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	79	2	1.44934	2.283785	3.11823	0.0658369	5.25625e-4	0.181518	0.0206013
chr15	42875653	42875752	6158552	0	-	0.535354	(0.515,0.57]	chr15	586293	25	INTRON	INTRON	TTBK2	ENSG00000128881.18	ENST00000267890.11:ENST00000567840.5:ENST00000567274.5:ENST00000564431.5:ENST00000562880.5:ENST00000566931.1:ENST00000567485.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	34	2	2.23915	2.283755	2.32836	0.0596178	0.0126662	0.16883600000000001	0.0982897
chr11	62136043	62136142	4797999	0	+	0.515152	(0.476,0.515]	chr11	444484	51	INTRON	INTRON	INCENP	ENSG00000149503.13	ENST00000278849.4:ENST00000394818.8:ENST00000528037.1:ENST00000528375.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	46	2	1.80284	2.28372	2.7646	0.033161	0.0162075	0.145899	0.101453
chrX	110008959	110009059	7700096	0	+	0.41	(0.408,0.44]	chrX	788130	44	INTRON	INTRON	TMEM164	ENSG00000157600.12	ENST00000372072.7:ENST00000471255.5:ENST00000372073.5:ENST00000372068.7:ENST00000288381.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	60	2	1.66945	2.2837	2.89795	0.0218479	0.0110735	0.123836	0.0873897
chr3	14449407	14449507	1369872	0	+	0.54	(0.515,0.57]	chr3	144349	12	INTRON	INTRON	SLC6A6	ENSG00000131389.18	ENST00000613060.4:ENST00000618278.4:ENST00000610642.4:ENST00000649500.1:ENST00000622186.5:ENST00000622176.4:ENST00000615188.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	87	2	2.22166	2.2836749999999997	2.34569	0.00735516	0.0012338	0.0765982	0.0322271
chr16	46613259	46613359	6478036	0	-	0.39	(0.378,0.408]	chr16	626595	45	INTRON	INTRON	SHCBP1	ENSG00000171241.9	ENST00000303383.8:ENST00000569702.1:ENST00000566016.5:ENST00000565887.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	48	2	1.8374	2.283665	2.72993	0.0299228	0.0188736	0.142135	0.108861
chr1	22069718	22069818	42375	0	+	0.46	(0.44,0.476]	chr1	5089	4	SS5_PROX	SS5_PROX:INTRON	ENSG00000289694:CDC42	ENSG00000289694.1:ENSG00000070831.18	ENST00000695855.1:ENST00000695856.1:ENST00000344548.8:ENST00000400259.5:ENST00000667384.2:ENST00000411827.2:ENST00000695858.1:ENST00000695857.1:ENST00000315554.14:ENST00000695859.1:ENST00000498236.1:ENST00000656825.1:ENST00000651171.1:ENST00000652582.1:ENST00000695860.1:ENST00000695796.1:ENST00000695797.1:ENST00000662562.2:ENST00000695798.1:ENST00000695799.1:ENST00000695800.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	75	2	2.03034	2.2836499999999997	2.53696	0.0173569	0.00204135	0.104189	0.041855
chr2	53954673	53954772	1120415	0	-	0.474747	(0.44,0.476]	chr2	120102	50	INTRON	INTRON	PSME4	ENSG00000068878.15	ENST00000404125.6:ENST00000389993.7:ENST00000481518.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	75	2	2.03034	2.2836499999999997	2.53696	0.0173569	0.00204135	0.104189	0.041855
chr7	105045610	105045710	3374938	0	+	0.33	(0.32,0.35]	chr7	315877	42	INTRON	INTRON	KMT2E	ENSG00000005483.22	ENST00000622386.2:ENST00000257745.9:ENST00000334884.9:ENST00000311117.8:ENST00000478990.5:ENST00000495267.5:ENST00000476671.5:ENST00000667857.1:ENST00000474203.5:ENST00000482560.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	65	2	2.05666	2.283635	2.51061	0.0364463	0.00840213	0.138959	0.0824581
chr7	75186243	75186339	3557268	0	-	0.395833	(0.378,0.408]	chr7	331271	10	EXON_MRNA	EXON_MRNA:EXON_LNCRNA	GTF2IP1	ENSG00000277053.4	ENST00000618412.4:ENST00000622829.4:ENST00000621948.4	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript	5	55	2	1.51223	2.283625	3.05502	0.051139	0.00689519	0.176696	0.0717484
chr10	24653491	24653591	4581240	0	-	0.5	(0.476,0.515]	chr10	422181	180	INTRON	INTRON	ARHGAP21	ENSG00000107863.20	ENST00000612832.4:ENST00000396432.7:ENST00000680286.1:ENST00000376410.7:ENST00000446003.5:ENST00000476499.1:ENST00000416305.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	46	2	1.68092	2.28361	2.8863	0.0474026	0.0111679	0.169265	0.0877435
chr14	23310398	23310494	5656836	0	+	0.479167	(0.476,0.515]	chr14	539438	16	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	BCL2L2:BCL2L2-PABPN1	ENSG00000129473.11:ENSG00000258643.6	ENST00000679219.1:ENST00000678311.1:ENST00000678502.1:ENST00000250405.10:ENST00000557579.2:ENST00000553781.5:ENST00000679000.1:ENST00000556100.3:ENST00000557008.2:ENST00000556599.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	46	2	1.68092	2.28361	2.8863	0.0474026	0.0111679	0.169265	0.0877435
chr7	149251627	149251727	3445775	0	+	0.48	(0.476,0.515]	chr7	321427	3	SS5_PROX	SS5_PROX:INTRON	ZNF212	ENSG00000170260.9	ENST00000335870.7:ENST00000481584.1:ENST00000488917.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	46	2	1.68092	2.28361	2.8863	0.0474026	0.0111679	0.169265	0.0877435
chr22	21586564	21586664	7481893	0	+	0.48	(0.476,0.515]	chr22	763232	178	INTRON	INTRON	UBE2L3	ENSG00000185651.16	ENST00000458578.6:ENST00000545681.2:ENST00000696046.1:ENST00000342192.9:ENST00000496722.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	64	2	1.52615	2.28356	3.04097	0.0739267	7.0601e-4	0.190914	0.0241881
chr7	152154933	152155030	3678410	0	-	0.391753	(0.378,0.408]	chr7	341402	6	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	KMT2C	ENSG00000055609.21	ENST00000360104.8:ENST00000262189.11:ENST00000418061.2:ENST00000680877.1:ENST00000424877.6:ENST00000679560.1:ENST00000682040.1:ENST00000683120.1:ENST00000681923.1:ENST00000679393.1:ENST00000683200.1:ENST00000680029.1:ENST00000683337.1:ENST00000683178.1:ENST00000683502.1:ENST00000684261.1:ENST00000682283.1:ENST00000473186.5:ENST00000684649.1:ENST00000679882.1:ENST00000684069.1:ENST00000485241.2:ENST00000684330.1:ENST00000683886.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	105	2	1.7981	2.283515	2.76893	0.00563164	0.00316735	0.0678837	0.0503085
chr12	9752783	9752883	5265172	0	-	0.32	(0.28,0.32]	chr12	501938	4	UTR3	UTR3:EXON_MRNA	CD69	ENSG00000110848.8	ENST00000228434.7	protein_coding	protein_coding	protein_coding	protein_coding	8	88	2	1.26409	2.28336	3.30263	0.0570949	0.0038504	0.186331	0.0542786
chr1	51764534	51764633	100890	0	+	0.363636	(0.35,0.378]	chr1	13345	22	INTRON	INTRON	OSBPL9	ENSG00000117859.19	ENST00000371714.5:ENST00000428468.6:ENST00000447887.5:ENST00000495776.5:ENST00000435274.6:ENST00000453295.5:ENST00000489990.5:ENST00000532975.5:ENST00000531828.5:ENST00000361556.9:ENST00000526917.5:ENST00000462759.5:ENST00000486942.5:ENST00000528603.5:ENST00000475697.5:ENST00000531061.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	68	2	2.24196	2.2833	2.32464	0.0159285	0.00744693	0.101453	0.0772645
chr9	107288099	107288198	4183425	0	+	0.353535	(0.35,0.378]	chr9	381543	28	INTRON	INTRON	RAD23B	ENSG00000119318.13	ENST00000419616.5:ENST00000358015.8:ENST00000416373.6:ENST00000442587.1	protein_coding	protein_coding	protein_coding	protein_coding	13	100	2	1.08717	2.28325	3.47933	0.056245	0.0015613	0.18413	0.0360352
chr9	112319066	112319165	4317815	0	-	0.393939	(0.378,0.408]	chr9	397079	208	INTRON	INTRON	PTBP3	ENSG00000119314.16	ENST00000334318.10:ENST00000458258.5:ENST00000374257.6:ENST00000374255.6:ENST00000343327.6:ENST00000487997.1:ENST00000210227.4:ENST00000450374.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	65	2	1.77782	2.283245	2.78867	0.0388177	0.00226991	0.143072	0.0437013
chr9	37189152	37189251	4118348	0	+	0.343434	(0.32,0.35]	chr9	375389	22	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000461038.5:ENST00000488607.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	123	2	1.82841	2.28324	2.73807	0.00930076	0.00139315	0.0855292	0.0340865
chr19	29961552	29961651	7047747	0	+	0.373737	(0.35,0.378]	chr19	702663	31	INTRON	INTRON	URI1	ENSG00000105176.18	ENST00000360605.8:ENST00000570564.5:ENST00000574233.5:ENST00000392271.6:ENST00000574110.5:ENST00000574666.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	82	2	2.13524	2.28316	2.43108	0.0130865	0.00345501	0.0934394	0.0539802
chr7	155747264	155747364	3452940	0	+	0.33	(0.32,0.35]	chr7	322730	2	INTRON	INTRON	RBM33	ENSG00000184863.11	ENST00000401878.8:ENST00000392761.3:ENST00000438356.1:ENST00000341148.7	protein_coding	protein_coding	protein_coding	protein_coding	12	168	2	1.8237	2.28315	2.7426	0.00946453	1.73451e-4	0.0817766	0.0114162
chr16	8100622	8100722	6441515	0	-	0.38	(0.378,0.408]	chr16	620351	930	INTRON	INTRON	ENSG00000260289	ENSG00000260289.2	ENST00000670665.1:ENST00000654046.1:ENST00000567103.2	lncRNA	lncRNA	lncRNA	lncRNA	6	78	2	2.13797	2.2831200000000003	2.42827	0.0124882	0.00336942	0.0923444	0.0532965
chr1	179210650	179210750	592889	0	-	0.5	(0.476,0.515]	chr1	71074	677	INTRON	INTRON	ABL2	ENSG00000143322.21	ENST00000502732.6:ENST00000367623.8:ENST00000507173.5:ENST00000511413.5:ENST00000668691.1:ENST00000392043.4:ENST00000660584.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	62	2	1.88582	2.283025	2.68023	0.0273268	0.00353671	0.123904	0.0546236
chr11	57779705	57779805	4793310	0	+	0.48	(0.476,0.515]	chr11	443717	152	INTRON	INTRON	ENSG00000288534:CTNND1	ENSG00000288534.1:ENSG00000198561.16	ENST00000673781.1:ENST00000673810.1:ENST00000674116.1:ENST00000674060.1:ENST00000524630.5:ENST00000529919.5:ENST00000533189.1:ENST00000682741.1:ENST00000358694.10:ENST00000361332.8:ENST00000361391.10:ENST00000361796.9:ENST00000415361.6:ENST00000426142.6:ENST00000428599.6:ENST00000525902.5:ENST00000526357.5:ENST00000526772.5:ENST00000527467.5:ENST00000528232.5:ENST00000528621.5:ENST00000529526.5:ENST00000529873.5:ENST00000529986.5:ENST00000530094.5:ENST00000530748.5:ENST00000531014.5:ENST00000532245.5:ENST00000532463.5:ENST00000532649.5:ENST00000532787.5:ENST00000532844.5:ENST00000533667.5:ENST00000534579.5:ENST00000399050.10:ENST00000526938.5:ENST00000531007.2:ENST00000674015.1:ENST00000673826.1:ENST00000673683.1:ENST00000674106.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	62	2	1.88582	2.283025	2.68023	0.0273268	0.00353671	0.123904	0.0546236
chr4	138180715	138180790	2245205	0	-	0.453333	(0.44,0.476]	chr4	219462	2	CDS	CDS:UTR3:EXON_MRNA	SLC7A11	ENSG00000151012.13	ENST00000280612.9:ENST00000509248.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	111	2	2.10467	2.28301	2.46135	0.0374637	7.06364e-4	0.140008	0.0241881
chr9	130790253	130790353	4214627	0	+	0.56	(0.515,0.57]	chr9	386427	754	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000393293.4	protein_coding	protein_coding	protein_coding	protein_coding	7	74	2	1.9888	2.282965	2.57713	0.00963364	0.00176427	0.086971	0.0376652
chr11	85987459	85987558	5014005	0	-	0.242424	[0,0.28]	chr11	472941	31	INTRON	INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000530692.5:ENST00000630913.2:ENST00000529760.5:ENST00000528398.5:ENST00000356360.9:ENST00000529016.5:ENST00000526961.5:ENST00000530542.1	protein_coding	protein_coding	protein_coding	protein_coding	8	141	2	2.26858	2.282925	2.29727	0.0103431	0.00271709	0.0850389	0.0481073
chr11	85986065	85986165	5013991	0	-	0.24	[0,0.28]	chr11	472941	17	INTRON	INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000530692.5:ENST00000630913.2:ENST00000529760.5:ENST00000528398.5:ENST00000356360.9:ENST00000529016.5:ENST00000526961.5:ENST00000530542.1	protein_coding	protein_coding	protein_coding	protein_coding	11	190	2	2.19066	2.28289	2.37512	0.00450668	0.00186697	0.0595107	0.0399876
chr6	15257458	15257558	2823060	0	+	0.42	(0.408,0.44]	chr6	265190	81	INTRON	INTRON	JARID2	ENSG00000008083.14	ENST00000341776.7:ENST00000397311.4	protein_coding	protein_coding	protein_coding	protein_coding	10	122	2	2.10638	2.28277	2.45916	0.00465298	6.48651e-4	0.0600108	0.0230814
chr19	8461368	8461468	7010928	0	+	0.44	(0.408,0.44]	chr19	696143	54	INTRON	INTRON	HNRNPM	ENSG00000099783.12	ENST00000348943.7:ENST00000597813.5:ENST00000600092.5:ENST00000325495.9:ENST00000600806.5:ENST00000620401.4:ENST00000594907.5:ENST00000596984.5:ENST00000601645.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	138	2	1.86022	2.2825699999999998	2.70492	0.00412101	5.24714e-4	0.0586502	0.0210958
chr7	44877781	44877880	3528701	0	-	0.424242	(0.408,0.44]	chr7	329128	16	UTR3	UTR3:EXON_MRNA	PURB	ENSG00000146676.10	ENST00000395699.5	protein_coding	protein_coding	protein_coding	protein_coding	6	72	2	1.84301	2.282545	2.72208	0.0174311	0.00364449	0.112689	0.0535094
chr16	10455928	10456027	6286985	0	+	0.313131	(0.28,0.32]	chr16	602009	12	INTRON	INTRON	ATF7IP2	ENSG00000166669.14	ENST00000396559.5:ENST00000396560.6:ENST00000543967.5:ENST00000562102.6:ENST00000535850.5:ENST00000568027.5:ENST00000324570.9:ENST00000356427.2:ENST00000565616.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	110	2	1.89468	2.282525	2.67037	0.019774	0.00141946	0.109608	0.034662
chr2	230715657	230715757	1030187	0	+	0.43	(0.408,0.44]	chr2	110002	12	INTRON	INTRON	CAB39	ENSG00000135932.12	ENST00000258418.10:ENST00000409788.7:ENST00000410084.7	protein_coding	protein_coding	protein_coding	protein_coding	15	180	2	2.0587	2.28252	2.50634	0.00215319	1.75878e-4	0.0417866	0.011551
chr1	235493689	235493787	664350	0	-	0.44898	(0.44,0.476]	chr1	78630	41	INTRON	INTRON	B3GALNT2	ENSG00000162885.14	ENST00000366600.8:ENST00000675193.1:ENST00000676288.1:ENST00000675555.1:ENST00000612859.4:ENST00000313984.3:ENST00000494378.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	10	121	2	2.10752	2.282495	2.45747	0.0045456	6.55527e-4	0.0595107	0.0232396
chr16	24779864	24779964	6329721	0	+	0.45	(0.44,0.476]	chr16	605958	10	INTRON	INTRON	TNRC6A	ENSG00000090905.19	ENST00000395799.8:ENST00000315183.11:ENST00000491718.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	52	2	1.96602	2.28245	2.59888	0.0426807	0.00487719	0.148082	0.0640618
chr11	86012692	86012792	5014270	0	-	0.25	[0,0.28]	chr11	472987	3	SS3_PROX	SS3_PROX:INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000630913.2:ENST00000528398.5:ENST00000356360.9:ENST00000534412.5:ENST00000531771.5:ENST00000531558.1:ENST00000531930.5:ENST00000532041.5:ENST00000525162.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	103	2	1.51616	2.282415	3.04867	0.0275079	0.0104221	0.136901	0.085482
chr17	29410597	29410697	6585838	0	+	0.4	(0.378,0.408]	chr17	640377	66	INTRON	INTRON	TAOK1	ENSG00000160551.12	ENST00000261716.8:ENST00000583121.5:ENST00000587277.1:ENST00000536202.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	40	2	2.17608	2.282405	2.38873	0.0458857	0.0218783	0.149888	0.123836
chr4	24561297	24561397	2118778	0	-	0.38	(0.378,0.408]	chr4	209242	45	INTRON	INTRON	DHX15	ENSG00000109606.13	ENST00000336812.5	protein_coding	protein_coding	protein_coding	protein_coding	3	40	2	2.17608	2.282405	2.38873	0.0458857	0.0218783	0.149888	0.123836
chr7	121050442	121050527	3394257	0	+	0.388235	(0.378,0.408]	chr7	317692	1	SS3_PROX	SS3_PROX:INTRON	CPED1	ENSG00000106034.18	ENST00000340646.9:ENST00000310396.10:ENST00000428526.5:ENST00000495036.5:ENST00000450913.6:ENST00000520801.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	40	2	2.17608	2.282405	2.38873	0.0458857	0.0218783	0.149888	0.123836
chrX	24076028	24076124	7630956	0	+	0.375	(0.35,0.378]	chrX	781493	23	INTRON	INTRON	EIF2S3	ENSG00000130741.11	ENST00000253039.9:ENST00000457332.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	95	2	1.89908	2.28238	2.66568	0.00658205	0.00496487	0.0737338	0.0615009
chr3	47144745	47144845	1681412	0	-	0.45	(0.44,0.476]	chr3	171624	177	INTRON	INTRON	SETD2	ENSG00000181555.22	ENST00000691544.1:ENST00000638947.2:ENST00000409792.4:ENST00000412450.1	protein_coding	protein_coding	protein_coding	protein_coding	5	53	2	1.70242	2.282365	2.86231	0.0282713	0.012214	0.137721	0.0910127
chr1	100046518	100046618	171688	0	+	0.41	(0.408,0.44]	chr1	18596	29	INTRON	INTRON	ENSG00000283761:MFSD14A	ENSG00000283761.1:ENSG00000156875.14	ENST00000638792.1:ENST00000638968.1:ENST00000639040.1:ENST00000639037.1:ENST00000638779.1:ENST00000639171.1:ENST00000640238.1:ENST00000640357.1:ENST00000370152.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	68	2	2.20396	2.2823450000000003	2.36073	0.0481658	0.00235889	0.153019	0.0445848
chr1	17418630	17418728	384770	0	-	0.428571	(0.408,0.44]	chr1	45465	16	INTRON	INTRON	RCC2	ENSG00000179051.14	ENST00000375436.9:ENST00000375433.3	protein_coding	protein_coding	protein_coding	protein_coding	12	144	2	1.99307	2.282345	2.57162	0.00380257	3.50541e-4	0.0542786	0.0166929
chr17	31992346	31992445	6596239	0	+	0.30303	(0.28,0.32]	chr17	641589	35	INTRON	INTRON	SUZ12	ENSG00000178691.11	ENST00000322652.10:ENST00000580398.1	protein_coding	protein_coding	protein_coding	protein_coding	3	49	2	1.76293	2.28225	2.80157	0.0766478	0.0147132	0.196164	0.106558
chr12	116221343	116221443	5424985	0	-	0.3	(0.28,0.32]	chr12	518271	402	INTRON	INTRON	MED13L	ENSG00000123066.9	ENST00000281928.9:ENST00000650226.1:ENST00000548743.2:ENST00000647567.1:ENST00000551197.2	protein_coding	protein_coding	protein_coding	protein_coding	9	140	2	2.21774	2.2820400000000003	2.34634	0.00649055	0.00156493	0.0699952	0.0365263
chr17	31107064	31107164	6591254	0	+	0.39	(0.378,0.408]	chr17	641053	113	INTRON	INTRON	NF1	ENSG00000196712.20	ENST00000696138.1:ENST00000356175.7:ENST00000487476.5:ENST00000691014.1:ENST00000358273.9:ENST00000431387.8:ENST00000579081.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	40	2	1.89621	2.28203	2.66785	0.0488044	0.0224639	0.173377	0.11692
chr16	47465789	47465888	6343346	0	+	0.292929	(0.28,0.32]	chr16	608849	14	INTRON	INTRON	PHKB	ENSG00000102893.17	ENST00000566037.6:ENST00000566044.5:ENST00000299167.12:ENST00000696809.1:ENST00000323584.10:ENST00000565424.2:ENST00000567402.5:ENST00000563376.5:ENST00000564873.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	68	2	1.83325	2.28201	2.73077	0.0220748	0.0199548	0.120668	0.115395
chr1	6219805	6219904	5293	0	+	0.525253	(0.515,0.57]	chr1	1016	5	UTR3	UTR3:EXON_MRNA	RNF207	ENSG00000158286.13	ENST00000377939.5:ENST00000496676.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	35	2	2.21273	2.28199	2.35125	0.0436431	0.0196151	0.162255	0.109486
chr1	120850722	120850818	536769	0	-	0.5	(0.476,0.515]	chr1	63056	12	EXON_LNCRNA	EXON_LNCRNA	ENSG00000287979	ENSG00000287979.1	ENST00000664186.1	lncRNA	lncRNA	lncRNA	lncRNA	7	84	2	2.08404	2.281765	2.47949	0.0326974	0.00332119	0.145164	0.0512081
chr1	1787986	1788082	361792	0	-	0.447917	(0.44,0.476]	chr1	42248	1	EXON_MRNA	EXON_MRNA:INTRON	GNB1	ENSG00000078369.18	ENST00000610897.4:ENST00000615252.4:ENST00000378609.9:ENST00000461893.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	63	2	1.92837	2.281725	2.63508	0.0222222	0.00501007	0.124303	0.0618077
chr6	163427229	163427327	3031829	0	+	0.285714	(0.28,0.32]	chr6	282559	33	INTRON	INTRON	QKI	ENSG00000112531.17	ENST00000361758.8:ENST00000453779.6:ENST00000275262.11:ENST00000392127.6:ENST00000361752.8:ENST00000361195.6:ENST00000424802.7:ENST00000545607.5:ENST00000544436.5:ENST00000537041.5:ENST00000537124.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	118	2	2.2663	2.28169	2.29708	0.0195087	0.00146266	0.109483	0.0350367
chr5	36912465	36912565	2338787	0	+	0.43	(0.408,0.44]	chr5	225949	261	INTRON	INTRON	NIPBL	ENSG00000164190.19	ENST00000282516.13:ENST00000448238.2:ENST00000652901.1	protein_coding	protein_coding	protein_coding	protein_coding	8	88	2	1.54382	2.28162	3.01942	0.0284747	7.74413e-4	0.12666	0.0256083
chr8	11824523	11824621	3702748	0	+	0.5	(0.476,0.515]	chr8	343510	23	INTRON	INTRON	FDFT1	ENSG00000079459.13	ENST00000538689.4:ENST00000615631.4:ENST00000618539.4:ENST00000623368.3:ENST00000446331.6:ENST00000443614.6:ENST00000220584.9:ENST00000525607.5:ENST00000525283.5:ENST00000529464.5:ENST00000525900.5:ENST00000528812.5:ENST00000622850.2:ENST00000530664.5:ENST00000525954.5:ENST00000531249.2:ENST00000532266.5:ENST00000528643.5:ENST00000525777.5:ENST00000528729.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	88	2	2.02162	2.2815950000000003	2.54157	0.00697457	0.00361279	0.0718189	0.055406
chr17	27470013	27470113	6580901	0	+	0.45	(0.44,0.476]	chr17	639655	128	INTRON	INTRON	KSR1	ENSG00000141068.15	ENST00000644974.2:ENST00000579309.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	72	2	1.47433	2.2815499999999997	3.08877	0.0595438	5.52878e-4	0.16883600000000001	0.021371
chr1	100091320	100091419	515437	0	-	0.343434	(0.32,0.35]	chr1	60434	27	INTRON	INTRON	SASS6	ENSG00000156876.10	ENST00000462159.1:ENST00000287482.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	62	2	2.13945	2.281485	2.42352	0.0254517	0.0122807	0.133676	0.091087
chr20	34485782	34485881	7260367	0	+	0.454545	(0.44,0.476]	chr20	737555	42	INTRON	INTRON	ITCH	ENSG00000078747.16	ENST00000374864.10:ENST00000535650.7:ENST00000670516.1:ENST00000665484.1:ENST00000664852.1:ENST00000660337.1:ENST00000262650.10:ENST00000665346.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	49	2	2.26452	2.28147	2.29842	0.0552483	0.00654074	0.165463	0.0735539
chr3	177171816	177171915	1872192	0	-	0.444444	(0.44,0.476]	chr3	187438	5	INTRON	INTRON	TBL1XR1	ENSG00000177565.18	ENST00000457928.7:ENST00000430069.5:ENST00000673974.1:ENST00000352800.10:ENST00000422442.6:ENST00000428970.5:ENST00000424913.5:ENST00000437738.5:ENST00000431421.5:ENST00000635794.1:ENST00000630796.2:ENST00000450267.5:ENST00000630833.2:ENST00000431674.5:ENST00000422066.5:ENST00000443315.5:ENST00000627825.2:ENST00000427349.5:ENST00000413084.5:ENST00000637137.1:ENST00000491623.2:ENST00000637544.1:ENST00000636187.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	49	2	2.26452	2.28147	2.29842	0.0552483	0.00654074	0.165463	0.0735539
chrX	136927673	136927773	7727646	0	+	0.47	(0.44,0.476]	chrX	790772	19	INTRON	INTRON	TM9SF5P	ENSG00000234062.9	ENST00000650669.2:ENST00000687469.1:ENST00000431464.6:ENST00000685550.1:ENST00000685929.1:ENST00000424306.5:ENST00000687978.1:ENST00000688713.1:ENST00000693626.1:ENST00000686432.1:ENST00000693698.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	6	67	2	1.81921	2.281465	2.74372	0.0153007	0.0142184	0.108569	0.0960818
chr7	148851804	148851904	3670438	0	-	0.42	(0.408,0.44]	chr7	340628	41	INTRON	INTRON	EZH2	ENSG00000106462.12	ENST00000683292.1:ENST00000320356.7:ENST00000492143.5:ENST00000478654.5:ENST00000350995.6:ENST00000460911.5:ENST00000683744.1:ENST00000682317.1:ENST00000682263.1:ENST00000684300.1:ENST00000476773.5:ENST00000483967.5:ENST00000498186.5:ENST00000483012.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	105	2	2.13881	2.281425	2.42404	0.00413548	0.00204027	0.0566868	0.041855
chr8	94929400	94929498	3994367	0	-	0.357143	(0.35,0.378]	chr8	365754	36	UTR3	UTR3:EXON_MRNA	TP53INP1	ENSG00000164938.14	ENST00000342697.5:ENST00000448464.6	protein_coding	protein_coding	protein_coding	protein_coding	4	51	2	2.02424	2.2813999999999997	2.53856	0.0326077	0.0164934	0.133687	0.110301
chr20	32412692	32412792	7256370	0	+	0.45	(0.44,0.476]	chr20	737076	403	INTRON	INTRON	ASXL1	ENSG00000171456.21	ENST00000651418.1:ENST00000375687.10:ENST00000613218.4:ENST00000644587.1:ENST00000620121.4:ENST00000646985.1:ENST00000643168.1:ENST00000306058.9:ENST00000645688.1:ENST00000470145.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	121	2	2.1171	2.2813600000000003	2.44562	0.0029312	0.00135452	0.0482589	0.0339121
chr6	169708919	169709018	3267185	0	-	0.282828	(0.28,0.32]	chr6	303278	20	UTR3	UTR3:EXON_MRNA:INTRON	PHF10	ENSG00000130024.15	ENST00000339209.9:ENST00000366780.8:ENST00000621772.4:ENST00000480008.1:ENST00000612128.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	60	2	1.64432	2.28132	2.91832	0.0606133	0.0102484	0.171142	0.089002
chr17	20872169	20872268	6576100	0	+	0.272727	[0,0.28]	chr17	639372	31	INTRON	INTRON	CCDC144NL-AS1	ENSG00000233098.10	ENST00000577537.5:ENST00000692759.1:ENST00000443508.8:ENST00000692309.1:ENST00000439794.6:ENST00000417232.6:ENST00000583962.2:ENST00000582324.5:ENST00000577860.5	lncRNA	lncRNA	lncRNA	lncRNA	2	41	2	2.27119	2.2813049999999997	2.29142	0.070351	0.0592143	0.189982	0.184298
chr6	34634101	34634201	3085591	0	-	0.21	[0,0.28]	chr6	288679	268	INTRON	INTRON	ILRUN	ENSG00000196821.10	ENST00000374026.7:ENST00000374023.8:ENST00000374021.1	protein_coding	protein_coding	protein_coding	protein_coding	2	41	2	2.27119	2.2813049999999997	2.29142	0.070351	0.0592143	0.189982	0.184298
chr7	143299161	143299248	3441399	0	+	0.275862	[0,0.28]	chr7	320929	5	INTRON	INTRON	CASP2	ENSG00000106144.20	ENST00000619992.4:ENST00000310447.10:ENST00000350623.7:ENST00000493642.5:ENST00000472067.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	41	2	2.27119	2.2813049999999997	2.29142	0.070351	0.0592143	0.189982	0.184298
chr9	4736356	4736456	4228881	0	-	0.24	[0,0.28]	chr9	388786	134	INTRON	INTRON	AK3	ENSG00000147853.17	ENST00000381809.8:ENST00000611749.4:ENST00000359883.6:ENST00000447596.4	protein_coding	protein_coding	protein_coding	protein_coding	2	41	2	2.27119	2.2813049999999997	2.29142	0.070351	0.0592143	0.189982	0.184298
chr7	105089125	105089225	3375393	0	+	0.29	(0.28,0.32]	chr7	315949	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	KMT2E	ENSG00000005483.22	ENST00000257745.9:ENST00000334884.9:ENST00000311117.8:ENST00000478990.5:ENST00000476671.5:ENST00000667857.1:ENST00000482560.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	96	2	2.17756	2.2813	2.38504	0.0130851	0.00475871	0.0934394	0.0636201
chr3	28272654	28272754	1390858	0	+	0.39	(0.378,0.408]	chr3	145643	89	INTRON	INTRON	CMC1	ENSG00000187118.14	ENST00000477739.1:ENST00000423894.5:ENST00000466830.6:ENST00000334841.10:ENST00000418849.2:ENST00000396610.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	74	2	2.0848	2.28116	2.47752	0.0092831	0.00697927	0.0817766	0.0754576
chr3	9414004	9414104	1359048	0	+	0.51	(0.476,0.515]	chr3	142655	157	INTRON	INTRON	SETD5	ENSG00000168137.20	ENST00000402198.7:ENST00000431285.5:ENST00000683012.1:ENST00000463180.5:ENST00000478475.5:ENST00000415650.5:ENST00000682536.1:ENST00000663774.1:ENST00000665872.1:ENST00000666307.1:ENST00000693430.1:ENST00000691925.1:ENST00000684606.1:ENST00000691175.1:ENST00000688835.1:ENST00000683262.1:ENST00000443339.5:ENST00000406341.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	71	2	1.75142	2.28109	2.81076	0.0259024	0.00203568	0.121522	0.0417667
chr15	68092186	68092286	6056335	0	+	0.57	(0.515,0.57]	chr15	576567	39	INTRON	INTRON	PIAS1	ENSG00000033800.14	ENST00000564915.5:ENST00000249636.11:ENST00000562190.1:ENST00000545237.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	13	133	2	2.07244	2.281075	2.48971	0.00293638	1.55412e-4	0.0483234	0.0106835
chr7	10733401	10733501	3484114	0	-	0.52	(0.515,0.57]	chr7	325772	1715	INTRON	INTRON	MGC4859	ENSG00000283117.1	ENST00000634803.1	lncRNA	lncRNA	lncRNA	lncRNA	13	132	2	2.06609	2.2810699999999997	2.49605	0.00211745	2.49138e-4	0.0416504	0.0140075
chr19	3121631	3121729	6998814	0	+	0.459184	(0.44,0.476]	chr19	694074	3	UTR3	UTR3:EXON_MRNA	GNA11	ENSG00000088256.9	ENST00000078429.9	protein_coding	protein_coding	protein_coding	protein_coding	6	71	2	1.92704	2.28106	2.63508	0.0128054	0.00501007	0.0990564	0.0618077
chr2	175161142	175161241	1272271	0	-	0.323232	(0.32,0.35]	chr2	134482	96	INTRON	INTRON	ATF2	ENSG00000115966.18	ENST00000345739.9:ENST00000426833.7:ENST00000264110.7:ENST00000409635.5:ENST00000428760.5:ENST00000392544.5:ENST00000417080.5:ENST00000456655.5:ENST00000421438.5:ENST00000429579.5:ENST00000415955.5:ENST00000409499.5:ENST00000435231.6:ENST00000437522.5:ENST00000409833.5:ENST00000413123.5:ENST00000445349.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	62	2	1.76503	2.28105	2.79707	0.0240772	0.0170923	0.129859	0.104099
chr15	90875181	90875281	6102001	0	+	0.55	(0.515,0.57]	chr15	581004	2	SS3_PROX	SS3_PROX:INTRON	FURIN	ENSG00000140564.13	ENST00000268171.8:ENST00000610579.4:ENST00000680053.1:ENST00000618099.4	protein_coding	protein_coding	protein_coding	protein_coding	8	84	2	2.23927	2.28104	2.32281	0.00328621	0.00252428	0.0527031	0.0446656
chr20	35728811	35728911	7336414	0	-	0.55	(0.515,0.57]	chr20	747463	1	SS5_PROX	SS5_PROX:INTRON	RBM39	ENSG00000131051.24	ENST00000253363.11:ENST00000639702.1:ENST00000656873.1:ENST00000463004.5:ENST00000361162.10:ENST00000461283.5:ENST00000403542.6:ENST00000338163.10:ENST00000528062.7:ENST00000429968.5:ENST00000444878.5:ENST00000665058.1:ENST00000492779.5:ENST00000448303.5:ENST00000374038.7:ENST00000412738.5:ENST00000434927.5:ENST00000425184.5:ENST00000481037.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	36	2	2.23241	2.28104	2.32967	0.0581268	0.0133671	0.188651	0.0946278
chr7	73577201	73577291	3555445	0	-	0.488889	(0.476,0.515]	chr7	330917	1	INTRON	INTRON	TBL2	ENSG00000106638.18	ENST00000305632.11:ENST00000450285.5:ENST00000424598.5:ENST00000459913.5:ENST00000417008.5:ENST00000432538.5:ENST00000433464.5:ENST00000426966.5:ENST00000452475.5:ENST00000437521.5:ENST00000435792.5:ENST00000452125.5:ENST00000476136.5:ENST00000479892.5:ENST00000465279.5:ENST00000496056.5:ENST00000468669.5:ENST00000458466.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	13	144	2	1.5612	2.281015	3.00083	0.014821	6.46875e-5	0.0987724	0.00666922
chr17	44946927	44947027	6781803	0	-	0.48	(0.476,0.515]	chr17	668963	102	INTRON	INTRON	KIF18B	ENSG00000186185.14	ENST00000587309.5:ENST00000593135.6	protein_coding	protein_coding	protein_coding	protein_coding	7	85	2	2.21313	2.2809	2.34867	0.00539703	0.00401502	0.0644048	0.0578059
chr11	46786919	46787016	4948149	0	-	0.329897	(0.32,0.35]	chr11	463765	19	INTRON	INTRON	CKAP5	ENSG00000175216.15	ENST00000529230.6:ENST00000312055.9:ENST00000354558.7	protein_coding	protein_coding	protein_coding	protein_coding	7	93	2	1.72098	2.28087	2.84076	0.0192903	0.0027933	0.119831	0.0469265
chr22	19101067	19101167	7551801	0	-	0.44	(0.408,0.44]	chr22	771903	112	INTRON	INTRON	DGCR2	ENSG00000070413.20	ENST00000537045.5:ENST00000545799.5:ENST00000263196.12:ENST00000389262.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	48	2	1.74108	2.28075	2.82042	0.0424099	0.0120121	0.148082	0.0962115
chr17	82468586	82468674	6692365	0	+	0.284091	(0.28,0.32]	chr17	654563	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	NARF	ENSG00000141562.19	ENST00000579198.5:ENST00000390006.8:ENST00000583181.5:ENST00000584192.5:ENST00000580296.5:ENST00000345415.11:ENST00000581202.5:ENST00000374611.9:ENST00000457415.7:ENST00000581795.5:ENST00000584411.5:ENST00000577812.5:ENST00000581743.5:ENST00000577432.5:ENST00000582907.5:ENST00000309794.16:ENST00000578082.5:ENST00000580748.1:ENST00000577410.2:ENST00000579083.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	19	281	2	2.17947	2.28068	2.38189	0.00104577	4.95634e-4	0.0294539	0.0201536
chr19	34398436	34398532	7052837	0	+	0.458333	(0.44,0.476]	chr19	703425	13	EXON_MRNA	EXON_MRNA:INTRON	GPI	ENSG00000105220.17	ENST00000415930.8:ENST00000588991.7:ENST00000356487.11:ENST00000647446.1:ENST00000586425.2:ENST00000643067.1:ENST00000586392.1:ENST00000586077.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	106	2	1.64874	2.2806300000000004	2.91252	0.00875406	0.00164027	0.0846118	0.0369207
chr11	47468130	47468230	4949521	0	-	0.54	(0.515,0.57]	chr11	464136	23	UTR3	UTR3:EXON_MRNA	CELF1	ENSG00000149187.19	ENST00000310513.10:ENST00000687097.1:ENST00000395290.6	protein_coding	protein_coding	protein_coding	protein_coding	32	316	2	1.9057	2.28062	2.65554	7.44133e-4	4.91228e-6	0.0250906	0.00150985
chr1	212743599	212743699	634298	0	-	0.42	(0.408,0.44]	chr1	74949	36	INTRON	INTRON	NSL1	ENSG00000117697.15	ENST00000366977.8:ENST00000366978.5:ENST00000366976.3:ENST00000626725.1	protein_coding	protein_coding	protein_coding	protein_coding	4	52	2	2.11447	2.280605	2.44674	0.0285207	0.00868283	0.12666	0.0842798
chr13	19714385	19714485	5552254	0	-	0.35	(0.32,0.35]	chr13	530696	44	INTRON	INTRON	PSPC1	ENSG00000121390.19	ENST00000471658.5:ENST00000492741.5:ENST00000635562.1:ENST00000338910.9:ENST00000619300.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	122	2	2.0706	2.2805600000000004	2.49052	0.00384313	0.00327434	0.0542786	0.0526715
chr10	824271	824368	4541491	0	-	0.494845	(0.476,0.515]	chr10	419220	31	INTRON	INTRON	LARP4B	ENSG00000107929.16	ENST00000688365.1:ENST00000316157.8:ENST00000690516.1:ENST00000689323.1:ENST00000688042.1:ENST00000690211.1:ENST00000448368.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	62	2	2.01953	2.28055	2.54157	0.0163662	0.00697457	0.109586	0.0718189
chr4	138212188	138212287	2245526	0	-	0.282828	(0.28,0.32]	chr4	219484	266	INTRON	INTRON	SLC7A11	ENSG00000151012.13	ENST00000280612.9:ENST00000509248.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	13	136	2	1.68715	2.2804849999999997	2.87382	0.014868	0.0059017	0.0989021	0.0693938
chr16	22284193	22284292	6321476	0	+	0.40404	(0.378,0.408]	chr16	605178	3	UTR3	UTR3:EXON_MRNA	EEF2K	ENSG00000103319.12	ENST00000263026.10	protein_coding	protein_coding	protein_coding	protein_coding	5	65	2	1.94906	2.28047	2.61188	0.023282	0.0047055	0.118176	0.0631419
chr2	46626804	46626904	770583	0	+	0.41	(0.408,0.44]	chr2	86971	27	UTR3	UTR3:EXON_MRNA	CRIPT	ENSG00000119878.6	ENST00000238892.4	protein_coding	protein_coding	protein_coding	protein_coding	3	39	2	1.81572	2.28045	2.74518	0.0626779	0.0152229	0.175915	0.108535
chr1	8877692	8877785	374300	0	-	0.473118	(0.44,0.476]	chr1	43662	3	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	ENO1	ENSG00000074800.16	ENST00000234590.10:ENST00000647408.1:ENST00000646370.2:ENST00000645609.1:ENST00000497492.1:ENST00000646660.1:ENST00000646680.1:ENST00000646906.1:ENST00000646156.1:ENST00000643438.1:ENST00000489867.2:ENST00000486051.5:ENST00000492343.2:ENST00000414948.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	116	2	1.4659	2.28042	3.09494	0.0269628	1.77821e-4	0.135436	0.0121697
chr1	39560906	39561005	427614	0	-	0.323232	(0.32,0.35]	chr1	51882	3	UTR3	UTR3:EXON_MRNA	PABPC4	ENSG00000090621.15	ENST00000677006.1:ENST00000527718.2:ENST00000676859.1:ENST00000372858.8:ENST00000372856.7:ENST00000372857.7:ENST00000372862.7:ENST00000678469.1:ENST00000677708.1:ENST00000678028.1:ENST00000468476.1:ENST00000437136.5:ENST00000492468.5:ENST00000482028.5:ENST00000676523.1:ENST00000677548.1:ENST00000678980.1:ENST00000677244.1:ENST00000677609.1:ENST00000679246.1:ENST00000678287.1:ENST00000678625.1:ENST00000470443.6:ENST00000677860.1:ENST00000676863.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	16	180	2	1.23644	2.2803899999999997	3.32434	0.0387237	4.06293e-5	0.142912	0.00518085
chr2	20050709	20050809	1075724	0	-	0.55	(0.515,0.57]	chr2	114909	93	INTRON	INTRON	LAPTM4A	ENSG00000068697.7	ENST00000175091.5	protein_coding	protein_coding	protein_coding	protein_coding	5	54	2	2.15051	2.2803649999999998	2.41022	0.0238113	0.00332441	0.118889	0.0528673
chr1	150152460	150152560	221053	0	+	0.5	(0.476,0.515]	chr1	24904	3	SS3_PROX	SS3_PROX:INTRON	PLEKHO1	ENSG00000023902.14	ENST00000369126.5:ENST00000369124.5:ENST00000479194.5:ENST00000492304.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	39	2	1.99197	2.280325	2.56868	0.039572	0.0256676	0.143072	0.133676
chr18	206186	206286	6855316	0	+	0.37	(0.35,0.378]	chr18	679566	11	INTRON	INTRON	USP14	ENSG00000101557.15	ENST00000582707.5:ENST00000400266.7:ENST00000261601.8:ENST00000578942.5:ENST00000383589.6:ENST00000578786.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	87	2	2.03655	2.28025	2.52395	0.00824736	0.00535994	0.0773378	0.0663076
chr7	105120907	105121006	3601198	0	-	0.40404	(0.378,0.408]	chr7	336054	25	INTRON	INTRON	SRPK2	ENSG00000135250.17	ENST00000465072.5:ENST00000393651.8:ENST00000357311.7:ENST00000466917.1:ENST00000485455.1:ENST00000477925.5:ENST00000489828.5:ENST00000474770.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	48	2	1.89251	2.28018	2.66785	0.0251428	0.0224639	0.133404	0.11692
chr3	177178898	177178998	1872263	0	-	0.5	(0.476,0.515]	chr3	187438	76	INTRON	INTRON	TBL1XR1	ENSG00000177565.18	ENST00000457928.7:ENST00000430069.5:ENST00000673974.1:ENST00000352800.10:ENST00000422442.6:ENST00000428970.5:ENST00000424913.5:ENST00000437738.5:ENST00000431421.5:ENST00000635794.1:ENST00000630796.2:ENST00000450267.5:ENST00000630833.2:ENST00000431674.5:ENST00000422066.5:ENST00000443315.5:ENST00000627825.2:ENST00000427349.5:ENST00000413084.5:ENST00000637137.1:ENST00000491623.2:ENST00000637544.1:ENST00000636187.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	85	2	2.2792	2.28016	2.28112	0.00700958	0.00299196	0.0718189	0.0503888
chr1	77953069	77953168	494249	0	-	0.434343	(0.408,0.44]	chr1	58487	34	INTRON	INTRON	FUBP1	ENSG00000162613.17	ENST00000370768.7:ENST00000492724.1:ENST00000492405.5:ENST00000294623.8:ENST00000370767.5:ENST00000487684.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	11	121	2	1.30866	2.280115	3.25157	0.0434157	4.51895e-5	0.14821	0.00546706
chr17	78118470	78118570	6844381	0	-	0.53	(0.515,0.57]	chr17	677120	1	SS5_PROX	SS5_PROX:INTRON	TMC6	ENSG00000141524.18	ENST00000590602.6:ENST00000592076.5:ENST00000322914.7:ENST00000392467.7:ENST00000306591.11:ENST00000593044.5:ENST00000591436.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	10	105	2	2.12085	2.2800599999999998	2.43927	0.00319489	7.64103e-4	0.0520636	0.0253443
chr8	42393016	42393114	3743962	0	+	0.244898	[0,0.28]	chr8	348270	7	INTRON	INTRON	VDAC3	ENSG00000078668.14	ENST00000518563.5:ENST00000520115.5:ENST00000522069.5:ENST00000522572.5:ENST00000022615.9:ENST00000519072.5:ENST00000521348.5:ENST00000518495.5:ENST00000521158.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	56	2	2.27119	2.28002	2.28885	0.070351	0.0181093	0.184298	0.114853
chr7	107137756	107137856	3378101	0	+	0.32	(0.28,0.32]	chr7	316264	91	INTRON	INTRON	PRKAR2B	ENSG00000005249.13	ENST00000265717.5:ENST00000393613.6:ENST00000488792.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	59	2	1.98806	2.280005	2.57195	0.0331711	0.0199553	0.133994	0.120668
chr1	28937359	28937459	59184	0	+	0.41	(0.408,0.44]	chr1	7621	222	INTRON	INTRON	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000647918.1:ENST00000646800.1:ENST00000644342.1:ENST00000646189.1:ENST00000482464.6:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000646260.1:ENST00000373798.5:ENST00000644600.1:ENST00000649674.1:ENST00000643173.1:ENST00000343067.9:ENST00000644780.1:ENST00000650265.1:ENST00000648181.1:ENST00000643604.1:ENST00000648891.1:ENST00000373797.2:ENST00000349460.9:ENST00000645184.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	129	2	1.7545	2.279995	2.80549	0.0104123	2.00735e-4	0.085482	0.0123913
chr1	47334516	47334616	97581	0	+	0.53	(0.515,0.57]	chr1	13137	4	SS5_PROX	SS5_PROX:INTRON	CMPK1	ENSG00000162368.14	ENST00000371873.10:ENST00000371871.8:ENST00000471289.2:ENST00000450808.2:ENST00000371870.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	54	2	1.88259	2.27996	2.67733	0.0251849	0.00366712	0.133519	0.0535094
chr1	21772566	21772666	396764	0	-	0.57	(0.515,0.57]	chr1	47345	144	INTRON	INTRON	USP48	ENSG00000090686.16	ENST00000400301.5:ENST00000308271.14:ENST00000529637.5:ENST00000421625.6:ENST00000527823.5:ENST00000532737.1:ENST00000489108.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	126	2	1.96006	2.2799449999999997	2.59983	0.00725161	7.65398e-5	0.072984	0.00735438
chr7	107082692	107082792	3377547	0	+	0.46	(0.44,0.476]	chr7	316248	120	INTRON	INTRON	PRKAR2B	ENSG00000005249.13	ENST00000265717.5:ENST00000393613.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	62	2	2.12992	2.27994	2.42996	0.010975	0.0104804	0.092635	0.0855777
chr22	19141185	19141280	7552138	0	-	0.378947	(0.378,0.408]	chr22	771945	8	INTRON	INTRON	ESS2	ENSG00000100056.12	ENST00000252137.11:ENST00000434568.5:ENST00000472073.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	55	2	1.45712	2.27993	3.10274	0.0597975	0.00586642	0.189982	0.0668095
chr1	246151872	246151972	677151	0	-	0.39	(0.378,0.408]	chr1	79721	556	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000391836.3:ENST00000453676.5:ENST00000462422.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	48	2	1.65821	2.279915	2.90162	0.0506302	0.0113157	0.17547	0.0886121
chr18	9112454	9112553	6868691	0	+	0.414141	(0.408,0.44]	chr18	680510	71	INTRON	INTRON	NDUFV2	ENSG00000178127.13	ENST00000577703.1:ENST00000318388.11:ENST00000583375.5:ENST00000400033.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	18	212	2	2.19774	2.279915	2.36209	0.00146437	1.16818e-4	0.0346702	0.00929802
chr19	16551412	16551510	7149708	0	-	0.408163	(0.378,0.408]	chr19	722349	17	UTR3	UTR3:EXON_MRNA:INTRON	SLC35E1	ENSG00000127526.15	ENST00000593812.1:ENST00000595753.6:ENST00000652421.1:ENST00000409648.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	48	2	1.65821	2.279915	2.90162	0.0506302	0.0113157	0.17547	0.0886121
chr7	43678915	43679015	3525872	0	-	0.38	(0.378,0.408]	chr7	328779	128	INTRON	INTRON	COA1	ENSG00000106603.20	ENST00000415076.6:ENST00000446330.6:ENST00000446564.5:ENST00000438444.5:ENST00000223336.11:ENST00000310564.10:ENST00000415798.5:ENST00000431651.5:ENST00000451651.5:ENST00000418140.5:ENST00000448704.5:ENST00000470156.1:ENST00000457939.1:ENST00000420441.1:ENST00000478504.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	48	2	1.65821	2.279915	2.90162	0.0506302	0.0113157	0.17547	0.0886121
chr5	28862433	28862533	2330374	0	+	0.52	(0.515,0.57]	chr5	225135	519	INTRON	INTRON	LINC02109	ENSG00000259786.7	ENST00000658190.1	lncRNA	lncRNA	lncRNA	lncRNA	10	105	2	1.73168	2.27988	2.82808	0.0119342	1.90363e-4	0.0962115	0.0126178
chr1	32392681	32392781	415178	0	-	0.49	(0.476,0.515]	chr1	50088	54	INTRON	INTRON	BSDC1	ENSG00000160058.19	ENST00000455895.7:ENST00000444377.5:ENST00000341071.11:ENST00000526031.5:ENST00000419121.6:ENST00000446293.6:ENST00000373520.8:ENST00000527513.5:ENST00000527163.5:ENST00000530485.1:ENST00000474414.5:ENST00000530876.5:ENST00000530753.1:ENST00000533084.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	86	2	1.82399	2.279815	2.73564	0.00866166	0.00333144	0.0842392	0.0512081
chr10	28535117	28535191	4413814	0	+	0.256757	[0,0.28]	chr10	407125	2	SS3_PROX	SS3_PROX:INTRON	WAC	ENSG00000095787.24	ENST00000680735.1:ENST00000375664.8:ENST00000428935.6:ENST00000651598.1:ENST00000628285.3:ENST00000526722.1:ENST00000681112.1:ENST00000528491.5:ENST00000679570.1:ENST00000375646.5:ENST00000354911.9:ENST00000347934.8:ENST00000420266.6:ENST00000651885.1:ENST00000651441.1:ENST00000679398.1:ENST00000424454.5:ENST00000530865.5:ENST00000442148.6:ENST00000448193.5:ENST00000414108.6:ENST00000679428.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	68	2	2.06426	2.2797650000000003	2.49527	0.0436497	0.0168952	0.14882	0.110899
chr6	170572265	170572351	3037568	0	+	0.406977	(0.378,0.408]	chr6	283159	1	UTR3	UTR3:EXON_MRNA	TBP	ENSG00000112592.15	ENST00000540980.5:ENST00000392092.7:ENST00000230354.10:ENST00000636632.1:ENST00000446829.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	99	2	2.04909	2.27976	2.51043	0.0048937	0.00304007	0.0641889	0.0493883
chr12	57422940	57423039	5339178	0	-	0.323232	(0.32,0.35]	chr12	510716	268	INTRON	INTRON	R3HDM2	ENSG00000179912.21	ENST00000402412.6:ENST00000347140.7:ENST00000634871.1:ENST00000448732.1	protein_coding	protein_coding	protein_coding	protein_coding	6	84	2	1.80487	2.27975	2.75463	0.0210603	0.00387748	0.122559	0.0543578
chr1	245793241	245793341	673554	0	-	0.43	(0.408,0.44]	chr1	79663	44	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000366517.5:ENST00000366516.5:ENST00000490107.6:ENST00000470510.5:ENST00000483072.5:ENST00000490322.1:ENST00000493441.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	86	2	2.2616	2.2796849999999997	2.29777	0.0067764	0.00321416	0.0711802	0.0523065
chr22	19102365	19102465	7551814	0	-	0.5	(0.476,0.515]	chr22	771903	125	INTRON	INTRON	DGCR2	ENSG00000070413.20	ENST00000537045.5:ENST00000545799.5:ENST00000263196.12:ENST00000389262.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	46	2	1.61586	2.27968	2.9435	0.0567093	0.00929849	0.185107	0.0817766
chr6	43556364	43556464	3097130	0	-	0.5	(0.476,0.515]	chr6	290063	4	SS3_PROX	SS3_PROX:INTRON	XPO5	ENSG00000124571.18	ENST00000265351.12:ENST00000496341.6:ENST00000424378.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	46	2	1.61586	2.27968	2.9435	0.0567093	0.00929849	0.185107	0.0817766
chr9	92054904	92055004	4285836	0	-	0.5	(0.476,0.515]	chr9	394001	1	SS5_PROX	SS5_PROX:INTRON	SPTLC1	ENSG00000090054.16	ENST00000643599.1:ENST00000642671.1:ENST00000646481.1:ENST00000689261.1:ENST00000690095.1:ENST00000646534.1:ENST00000262554.7:ENST00000687427.1:ENST00000690139.1:ENST00000687972.1:ENST00000689401.1:ENST00000686600.1:ENST00000686799.1:ENST00000644140.1:ENST00000692458.1:ENST00000687817.1:ENST00000693147.1:ENST00000482632.6:ENST00000689423.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	46	2	1.61586	2.27968	2.9435	0.0567093	0.00929849	0.185107	0.0817766
chr1	47292263	47292362	445885	0	-	0.393939	(0.378,0.408]	chr1	54033	23	INTRON	INTRON	STIL	ENSG00000123473.17	ENST00000360380.7:ENST00000371877.8:ENST00000337817.10:ENST00000683977.1:ENST00000682977.1:ENST00000396221.6:ENST00000447475.7:ENST00000436811.2:ENST00000682165.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	70	2	1.76983	2.279645	2.78946	0.0158859	0.0109303	0.101453	0.0924702
chr15	58061474	58061573	6187502	0	-	0.353535	(0.35,0.378]	chr15	589794	30	INTRON	INTRON	ALDH1A2	ENSG00000128918.15	ENST00000537372.5:ENST00000249750.9:ENST00000347587.7:ENST00000430119.6:ENST00000558231.5:ENST00000558595.5:ENST00000558239.5:ENST00000557967.5:ENST00000558073.5:ENST00000559297.5:ENST00000560122.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	31	2	2.1617	2.27958	2.39746	0.0771502	0.041314	0.196285	0.161534
chr17	37348266	37348365	6762464	0	-	0.363636	(0.35,0.378]	chr17	664970	25	INTRON	INTRON	ACACA	ENSG00000278540.5	ENST00000616317.5:ENST00000614428.4:ENST00000613146.4:ENST00000615229.4:ENST00000621960.1:ENST00000617548.1:ENST00000616352.4:ENST00000614789.4:ENST00000612007.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:non_stop_decay:nonsense_mediated_decay	2	31	2	2.1617	2.27958	2.39746	0.0771502	0.041314	0.196285	0.161534
chr19	21839308	21839404	7159665	0	-	0.354167	(0.35,0.378]	chr19	723788	1	SS5_PROX	SS5_PROX:INTRON	ZNF43	ENSG00000198521.12	ENST00000357491.10:ENST00000594012.5:ENST00000595461.5:ENST00000598381.5:ENST00000596899.1:ENST00000593551.1	protein_coding	protein_coding	protein_coding	protein_coding	2	31	2	2.1617	2.27958	2.39746	0.0771502	0.041314	0.196285	0.161534
chr19	41862995	41863089	7071821	0	+	0.457447	(0.44,0.476]	chr19	706884	11	INTRON	INTRON	RPS19	ENSG00000105372.8	ENST00000598742.6:ENST00000600467.6:ENST00000601492.5:ENST00000221975.6:ENST00000598261.2:ENST00000593863.5:ENST00000598399.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	80	2	2.26491	2.27958	2.29425	0.0518406	0.00227712	0.176696	0.0426265
chr6	3017185	3017285	2788032	0	+	0.36	(0.35,0.378]	chr6	263272	2	SS5_PROX	SS5_PROX:INTRON	NQO2	ENSG00000124588.22	ENST00000380455.11:ENST00000338130.7:ENST00000380441.5:ENST00000380454.8:ENST00000380430.6	protein_coding	protein_coding	protein_coding	protein_coding	2	31	2	2.1617	2.27958	2.39746	0.0771502	0.041314	0.196285	0.161534
chr7	44664440	44664539	3314870	0	+	0.373737	(0.35,0.378]	chr7	307918	77	INTRON	INTRON	OGDH	ENSG00000105953.16	ENST00000439616.6:ENST00000443864.6:ENST00000449767.5:ENST00000447398.5:ENST00000419661.5:ENST00000222673.6:ENST00000444676.5	protein_coding	protein_coding	protein_coding	protein_coding	2	31	2	2.1617	2.27958	2.39746	0.0771502	0.041314	0.196285	0.161534
chr7	105355656	105355756	3603573	0	-	0.37	(0.35,0.378]	chr7	336161	487	INTRON	INTRON	SRPK2	ENSG00000135250.17	ENST00000393651.8:ENST00000482897.5:ENST00000460391.5:ENST00000462282.5:ENST00000465112.5:ENST00000482862.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	31	2	2.1617	2.27958	2.39746	0.0771502	0.041314	0.196285	0.161534
chr7	156879772	156879872	3687884	0	-	0.37	(0.35,0.378]	chr7	342096	425	INTRON	INTRON	LMBR1	ENSG00000105983.23	ENST00000353442.10:ENST00000415428.5:ENST00000454132.5:ENST00000434503.5:ENST00000430278.5:ENST00000434278.5:ENST00000444719.5:ENST00000461469.5:ENST00000414218.1:ENST00000434453.1:ENST00000498034.5:ENST00000433968.5:ENST00000485985.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	31	2	2.1617	2.27958	2.39746	0.0771502	0.041314	0.196285	0.161534
chr9	33257575	33257671	4244135	0	-	0.354167	(0.35,0.378]	chr9	390143	8	EXON_MRNA	EXON_MRNA:INTRON	BAG1	ENSG00000107262.26	ENST00000634734.3:ENST00000467389.6:ENST00000379701.5:ENST00000379704.7:ENST00000379707.7:ENST00000468274.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	31	2	2.1617	2.27958	2.39746	0.0771502	0.041314	0.196285	0.161534
chr9	131414421	131414521	4217173	0	+	0.36	(0.35,0.378]	chr9	386720	198	INTRON	INTRON	PRRC2B	ENSG00000288701.1	ENST00000682525.1:ENST00000684596.1:ENST00000683519.1:ENST00000682501.1	protein_coding	protein_coding	protein_coding	protein_coding	2	31	2	2.1617	2.27958	2.39746	0.0771502	0.041314	0.196285	0.161534
chr9	130887475	130887575	4215608	0	+	0.6	(0.57,1]	chr9	386487	19	UTR3	UTR3:EXON_MRNA	ABL1	ENSG00000097007.19	ENST00000318560.6	protein_coding	protein_coding	protein_coding	protein_coding	14	72	2	1.37512	2.27955	3.18398	0.0187831	3.84422e-5	0.117733	0.00528498
chr17	82576756	82576856	6693182	0	+	0.43	(0.408,0.44]	chr17	654652	45	INTRON	INTRON	FOXK2	ENSG00000141568.21	ENST00000473637.6:ENST00000335255.10:ENST00000531030.5:ENST00000526383.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	52	2	2.16746	2.27954	2.39162	0.024436	0.0105837	0.12011	0.0911864
chr22	21691997	21692089	7482731	0	+	0.641304	(0.57,1]	chr22	763402	1	INTRON	INTRON	PPIL2	ENSG00000100023.20	ENST00000679795.1:ENST00000679540.1:ENST00000679580.1:ENST00000681286.1:ENST00000680061.1:ENST00000681338.1:ENST00000681956.1:ENST00000679827.1:ENST00000679534.1:ENST00000679479.1:ENST00000680393.1:ENST00000335025.12:ENST00000498109.2:ENST00000398831.8:ENST00000681394.1:ENST00000679477.1:ENST00000626352.2:ENST00000417788.5:ENST00000681791.1:ENST00000679692.1:ENST00000680962.1:ENST00000680094.1:ENST00000680434.1:ENST00000680109.1:ENST00000406385.1:ENST00000681137.1:ENST00000680860.1:ENST00000680183.1:ENST00000446951.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	15	91	2	2.24315	2.27954	2.31593	5.5282e-4	2.19194e-4	0.021632	0.0129762
chr1	246095543	246095643	676587	0	-	0.45	(0.44,0.476]	chr1	79717	421	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000391836.3:ENST00000464398.1:ENST00000453676.5:ENST00000462422.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	46	2	1.75627	2.27951	2.80275	0.0380723	0.0146513	0.157702	0.0982604
chr1	114484971	114485071	527637	0	-	0.51	(0.476,0.515]	chr1	62153	202	INTRON	INTRON	TRIM33	ENSG00000197323.12	ENST00000358465.7:ENST00000369543.6	protein_coding	protein_coding	protein_coding	protein_coding	5	63	2	1.86014	2.2794999999999996	2.69886	0.0277606	0.00385209	0.137011	0.0542786
chr18	2723638	2723733	6865568	0	+	0.378947	(0.378,0.408]	chr18	680049	6	INTRON	INTRON	SMCHD1	ENSG00000101596.17	ENST00000320876.11:ENST00000688342.1:ENST00000693213.1:ENST00000577880.5:ENST00000584897.5:ENST00000583441.2:ENST00000690757.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	90	2	2.06535	2.27948	2.49361	0.0159849	0.00109695	0.101453	0.0303708
chr17	78820395	78820490	6846188	0	-	0.515789	(0.515,0.57]	chr17	677427	4	SS3_PROX	SS3_PROX:INTRON	USP36	ENSG00000055483.20	ENST00000589225.5:ENST00000592231.6:ENST00000449938.7:ENST00000542802.7:ENST00000693020.1:ENST00000312010.10:ENST00000588086.6:ENST00000586066.3:ENST00000589254.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	41	2	1.811	2.27936	2.74772	0.0325989	0.0142192	0.133687	0.103638
chr10	86478260	86478360	4658927	0	-	0.52	(0.515,0.57]	chr10	429282	39	INTRON	INTRON	WAPL	ENSG00000062650.20	ENST00000298767.10	protein_coding	protein_coding	protein_coding	protein_coding	3	33	2	2.03361	2.279325	2.52504	0.0325854	0.029342	0.145164	0.128055
chr5	137993707	137993807	2730402	0	-	0.52	(0.515,0.57]	chr5	256973	50	INTRON	INTRON	FAM13B	ENSG00000031003.11	ENST00000689681.1:ENST00000033079.7:ENST00000425075.6:ENST00000420893.6	protein_coding	protein_coding	protein_coding	protein_coding	3	33	2	2.03361	2.279325	2.52504	0.0325854	0.029342	0.145164	0.128055
chr19	39359308	39359404	7067369	0	+	0.34375	(0.32,0.35]	chr19	705695	19	INTRON	INTRON	SAMD4B	ENSG00000179134.16	ENST00000610417.5:ENST00000598913.5:ENST00000314471.10:ENST00000599712.1:ENST00000594204.1:ENST00000596368.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	45	2	2.25173	2.27923	2.30673	0.0584434	0.0180122	0.167723	0.114436
chr2	55687044	55687144	1125702	0	-	0.53	(0.515,0.57]	chr2	120834	2	INTRON	INTRON	PNPT1	ENSG00000138035.15	ENST00000447944.7:ENST00000415374.5:ENST00000260604.8:ENST00000429805.1:ENST00000625249.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	33	2	1.94945	2.27922	2.60899	0.0414068	0.0232669	0.161557	0.118148
chr7	158635208	158635308	3688062	0	-	0.27	[0,0.28]	chr7	342108	31	INTRON	INTRON	NCAPG2	ENSG00000146918.20	ENST00000356309.8:ENST00000432615.5:ENST00000409423.5:ENST00000441982.5:ENST00000467785.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	143	2	1.45581	2.279175	3.10254	0.0586144	2.3374e-4	0.167915	0.0135358
chr16	89519778	89519877	6420455	0	+	0.636364	(0.57,1]	chr16	616212	31	EXON_LNCRNA	EXON_LNCRNA:SS3_PROX:INTRON	SPG7	ENSG00000197912.16	ENST00000647079.1:ENST00000646303.1:ENST00000643649.1:ENST00000643307.1:ENST00000566371.6:ENST00000644498.1:ENST00000645897.1:ENST00000643668.1:ENST00000644225.1:ENST00000645818.2:ENST00000645977.1:ENST00000645063.1:ENST00000646263.1:ENST00000643724.1:ENST00000644781.1:ENST00000644901.1:ENST00000645042.1:ENST00000646531.1:ENST00000646930.1:ENST00000642436.1:ENST00000644210.1:ENST00000564047.2:ENST00000646589.1:ENST00000268704.7:ENST00000646826.1:ENST00000646716.1:ENST00000643345.1:ENST00000341316.6:ENST00000645533.1:ENST00000646958.1:ENST00000642371.1:ENST00000643105.1:ENST00000645354.1:ENST00000643957.1:ENST00000642334.1:ENST00000647227.1:ENST00000562775.2:ENST00000568151.1:ENST00000646445.1:ENST00000564409.2:ENST00000643954.1:ENST00000646399.1:ENST00000644671.1:ENST00000643178.1:ENST00000611189.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	25	2	1.52865	2.27916	3.02967	0.0730445	0.00471306	0.189414	0.0631419
chr5	139342350	139342441	2499787	0	+	0.637363	(0.57,1]	chr5	238985	4	SS5_PROX	SS5_PROX:INTRON	PAIP2	ENSG00000120727.13	ENST00000507755.5:ENST00000265192.9:ENST00000510409.1:ENST00000511381.1:ENST00000511706.5:ENST00000507415.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	25	2	1.52865	2.27916	3.02967	0.0730445	0.00471306	0.189414	0.0631419
chr5	6630684	6630782	2566755	0	-	0.346939	(0.32,0.35]	chr5	245964	47	INTRON	INTRON	NSUN2	ENSG00000037474.15	ENST00000264670.11:ENST00000504374.5:ENST00000506139.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	63	2	1.42542	2.279095	3.13277	0.0718205	0.00458313	0.187046	0.0622676
chr12	121312103	121312202	5436761	0	-	0.292929	(0.28,0.32]	chr12	519847	17	INTRON	INTRON	ANAPC5	ENSG00000089053.13	ENST00000261819.8:ENST00000535641.5:ENST00000541887.5:ENST00000534976.5:ENST00000441917.6:ENST00000539079.5:ENST00000544314.5:ENST00000535482.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	36	2	2.2609	2.27907	2.29724	0.0671429	0.0554156	0.18407	0.183051
chr3	98842061	98842161	1755655	0	-	0.3	(0.28,0.32]	chr3	178100	163	INTRON	INTRON	DCBLD2	ENSG00000057019.16	ENST00000326840.11:ENST00000326857.9:ENST00000469648.5:ENST00000486004.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	36	2	2.2609	2.27907	2.29724	0.0671429	0.0554156	0.18407	0.183051
chr6	63643058	63643157	2883360	0	+	0.30303	(0.28,0.32]	chr6	273549	59	INTRON	INTRON	PHF3	ENSG00000118482.12	ENST00000262043.8:ENST00000506783.5:ENST00000481385.6:ENST00000515594.5:ENST00000494284.6:ENST00000509876.5:ENST00000509330.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	36	2	2.2609	2.27907	2.29724	0.0671429	0.0554156	0.18407	0.183051
chr6	113965953	113966052	3195686	0	-	0.30303	(0.28,0.32]	chr6	297744	32	INTRON	INTRON	HDAC2	ENSG00000196591.12	ENST00000519065.6:ENST00000368632.6:ENST00000519108.5:ENST00000425835.6:ENST00000523628.5:ENST00000521610.5:ENST00000522371.5:ENST00000521163.5:ENST00000518690.5:ENST00000523240.5:ENST00000521233.1:ENST00000520895.5:ENST00000524334.1:ENST00000520170.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	36	2	2.2609	2.27907	2.29724	0.0671429	0.0554156	0.18407	0.183051
chr7	32740849	32740949	3304312	0	+	0.3	(0.28,0.32]	chr7	306861	74	INTRON	INTRON	ZNRF2P1	ENSG00000237004.4	ENST00000650302.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	2	36	2	2.2609	2.27907	2.29724	0.0671429	0.0554156	0.18407	0.183051
chr14	103685018	103685106	5828220	0	+	0.681818	(0.57,1]	chr14	553124	1	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	KLC1	ENSG00000126214.22	ENST00000348520.10:ENST00000380038.7:ENST00000334553.11:ENST00000389744.8:ENST00000555836.5:ENST00000347839.10:ENST00000553286.5:ENST00000557575.5:ENST00000452929.6:ENST00000554280.5:ENST00000557450.5:ENST00000554228.5:ENST00000634686.1:ENST00000246489.11:ENST00000445352.8:ENST00000537046.6:ENST00000553325.5:ENST00000555856.1:ENST00000535194.2:ENST00000553680.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	25	2	1.63919	2.27904	2.91889	0.05421	0.00719009	0.164887	0.0756118
chr18	2694026	2694126	6865253	0	+	0.45	(0.44,0.476]	chr18	679981	1	SS3_PROX	SS3_PROX:INTRON	SMCHD1	ENSG00000101596.17	ENST00000320876.11:ENST00000688342.1:ENST00000684915.1:ENST00000581226.1:ENST00000693213.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	64	2	1.33609	2.2790049999999997	3.22192	0.0510862	0.00360821	0.176696	0.0533855
chr4	39923248	39923347	2131655	0	-	0.454545	(0.44,0.476]	chr4	210224	1	INTRON	INTRON	PDS5A	ENSG00000121892.15	ENST00000303538.13:ENST00000503396.5:ENST00000513798.1	protein_coding	protein_coding	protein_coding	protein_coding	7	64	2	1.33609	2.2790049999999997	3.22192	0.0510862	0.00360821	0.176696	0.0533855
chr17	32367571	32367671	6598164	0	+	0.26	[0,0.28]	chr17	641932	4	SS3_PROX	SS3_PROX:INTRON	ZNF207	ENSG00000010244.19	ENST00000321233.10:ENST00000394673.6:ENST00000394670.9:ENST00000342555.10:ENST00000577908.5:ENST00000581531.5:ENST00000584696.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	70	2	2.22743	2.2789900000000003	2.33055	0.062338	0.0097118	0.175343	0.0875962
chr3	19954251	19954351	1376107	0	+	0.47	(0.44,0.476]	chr3	145051	10	INTRON	INTRON	RAB5A	ENSG00000144566.11	ENST00000273047.9:ENST00000412966.5:ENST00000446547.5:ENST00000422242.1:ENST00000469122.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	71	2	2.08453	2.27896	2.47339	0.0090196	0.00689	0.080367	0.0750118
chr17	31937433	31937520	6595679	0	+	0.609195	(0.57,1]	chr17	641537	2	CDS	CDS:EXON_MRNA	SUZ12	ENSG00000178691.11	ENST00000322652.10:ENST00000580398.1	protein_coding	protein_coding	protein_coding	protein_coding	4	25	2	1.89351	2.278945	2.66438	0.0255126	0.0171563	0.133676	0.104099
chr7	4699059	4699159	3270083	0	+	0.41	(0.408,0.44]	chr7	303884	158	INTRON	INTRON	FOXK1	ENSG00000164916.11	ENST00000328914.5	protein_coding	protein_coding	protein_coding	protein_coding	5	63	2	1.69172	2.27892	2.86612	0.0486032	0.00157924	0.153946	0.0366789
chr8	102351185	102351285	4012136	0	-	0.39	(0.378,0.408]	chr8	367218	37	INTRON	INTRON	UBR5	ENSG00000104517.13	ENST00000520539.6:ENST00000220959.8:ENST00000521922.5	protein_coding	protein_coding	protein_coding	protein_coding	4	49	2	2.09402	2.278875	2.46373	0.0382831	0.0126438	0.141795	0.0982897
chr7	155661082	155661182	3452059	0	+	0.37	(0.35,0.378]	chr7	322642	158	INTRON	INTRON	RBM33	ENSG00000184863.11	ENST00000287912.7:ENST00000401878.8:ENST00000392759.7	protein_coding	protein_coding	protein_coding	protein_coding	7	94	2	2.13524	2.2788649999999997	2.42249	0.0130865	0.0016343	0.0934394	0.0372392
chr7	149247085	149247184	3445724	0	+	0.454545	(0.44,0.476]	chr7	321412	67	INTRON	INTRON	ZNF212	ENSG00000170260.9	ENST00000335870.7:ENST00000486371.1:ENST00000462724.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	86	2	2.09333	2.278775	2.46422	0.00776307	0.00282908	0.0757646	0.0491595
chr1	32655140	32655239	65868	0	+	0.40404	(0.378,0.408]	chr1	8416	27	INTRON	INTRON	RBBP4	ENSG00000162521.19	ENST00000414241.7:ENST00000527118.5:ENST00000373493.10:ENST00000401893.7:ENST00000524393.5:ENST00000492348.6:ENST00000526193.5:ENST00000525506.1:ENST00000373485.5:ENST00000477563.6:ENST00000458695.6:ENST00000490500.5:ENST00000445722.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	75	2	1.85455	2.278765	2.70298	0.0192049	0.00325723	0.108861	0.0524329
chr11	83077033	83077103	4840477	0	+	0.357143	(0.35,0.378]	chr11	451467	1	EXON_LNCRNA	EXON_LNCRNA:INTRON	RAB30-DT	ENSG00000246067.9	ENST00000658004.1:ENST00000527627.5:ENST00000526795.1:ENST00000533528.1:ENST00000658917.1	lncRNA	lncRNA	lncRNA	lncRNA	6	78	2	1.67913	2.27874	2.87835	0.0345494	0.00160563	0.13657	0.0367961
chr13	19724753	19724853	5552358	0	-	0.49	(0.476,0.515]	chr13	530696	148	INTRON	INTRON	PSPC1	ENSG00000121390.19	ENST00000471658.5:ENST00000492741.5:ENST00000635562.1:ENST00000338910.9:ENST00000619300.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	85	2	1.93099	2.27872	2.62645	0.0140312	0.00135678	0.0959618	0.0339121
chr7	1835061	1835161	3462936	0	-	0.33	(0.32,0.35]	chr7	323973	55	INTRON	INTRON	MAD1L1	ENSG00000002822.16	ENST00000481633.1:ENST00000406869.5:ENST00000399654.6:ENST00000402746.5:ENST00000265854.12:ENST00000450235.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	45	2	1.81328	2.278715	2.74415	0.0615716	0.0198267	0.193423	0.109608
chr1	29047538	29047637	60299	0	+	0.323232	(0.32,0.35]	chr1	7705	62	INTRON	INTRON	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000647918.1:ENST00000646800.1:ENST00000644342.1:ENST00000646189.1:ENST00000482464.6:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000646260.1:ENST00000373798.5:ENST00000644600.1:ENST00000649674.1:ENST00000643173.1:ENST00000343067.9:ENST00000644780.1:ENST00000650265.1:ENST00000648181.1:ENST00000643604.1:ENST00000648891.1:ENST00000373797.2:ENST00000349460.9:ENST00000645184.1:ENST00000645111.1:ENST00000643302.1:ENST00000645999.1:ENST00000642643.1:ENST00000636666.1:ENST00000644848.1:ENST00000644470.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	123	2	2.02635	2.2787100000000002	2.53107	0.00860484	0.00216627	0.0784134	0.0434015
chrX	73844331	73844431	7837967	0	-	0.4	(0.378,0.408]	chrX	799611	70	EXON_LNCRNA	EXON_LNCRNA:INTRON	XIST	ENSG00000229807.13	ENST00000650627.1:ENST00000434839.3:ENST00000429829.6:ENST00000650366.1:ENST00000650186.1:ENST00000635841.2:ENST00000650637.1:ENST00000648970.1:ENST00000666309.1	lncRNA	lncRNA	lncRNA	lncRNA	18	210	2	2.01214	2.278695	2.54525	8.32381e-4	4.03084e-4	0.0263691	0.0185763
chr11	57719307	57719407	4792684	0	+	0.39	(0.378,0.408]	chr11	443656	61	INTRON	INTRON	ENSG00000288534:TMX2	ENSG00000288534.1:ENSG00000213593.10	ENST00000673781.1:ENST00000673810.1:ENST00000278422.9:ENST00000674116.1:ENST00000524972.5:ENST00000378312.8:ENST00000530114.5:ENST00000525035.5:ENST00000529403.1:ENST00000528110.5:ENST00000533602.5:ENST00000528042.1:ENST00000674060.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	74	2	2.12071	2.27864	2.43657	0.0106733	0.00601933	0.0861859	0.0700813
chr17	47180861	47180961	6789309	0	-	0.3	(0.28,0.32]	chr17	669633	84	INTRON	INTRON	CDC27	ENSG00000004897.12	ENST00000066544.8:ENST00000531206.5:ENST00000533415.5:ENST00000527547.5:ENST00000526866.5:ENST00000525495.6:ENST00000573550.5:ENST00000575483.5:ENST00000532893.5:ENST00000528748.5:ENST00000532575.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	166	2	2.25851	2.278625	2.29874	0.00557435	8.60558e-4	0.0649303	0.0266163
chr6	4021866	4021966	2789703	0	+	0.55	(0.515,0.57]	chr6	263480	4	SS5_PROX	SS5_PROX:INTRON	PRPF4B	ENSG00000112739.17	ENST00000480058.5:ENST00000337659.11	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	46	2	1.43029	2.27846	3.12663	0.0645632	0.00374498	0.179192	0.0562234
chr2	23798137	23798230	1079637	0	-	0.354839	(0.35,0.378]	chr2	115227	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ATAD2B	ENSG00000119778.15	ENST00000238789.10:ENST00000381024.4:ENST00000474583.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	55	2	2.1617	2.278445	2.39519	0.0771502	0.00401951	0.196285	0.0578189
chr11	761953	762052	4720487	0	+	0.40404	(0.378,0.408]	chr11	436412	11	INTRON	INTRON	TALDO1	ENSG00000177156.11	ENST00000528070.5:ENST00000528097.5:ENST00000530440.1:ENST00000319006.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	89	2	2.20712	2.278435	2.34975	0.00978751	0.0021928	0.0835427	0.0435144
chr18	9919113	9919213	6873392	0	+	0.45	(0.44,0.476]	chr18	680866	29	INTRON	INTRON	VAPA	ENSG00000101558.14	ENST00000400000.7:ENST00000577901.5:ENST00000340541.4:ENST00000585042.5:ENST00000578314.1:ENST00000584796.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	16	184	2	2.10467	2.278315	2.45196	7.06364e-4	5.78011e-4	0.0241881	0.022319
chr1	1763830	1763929	361589	0	-	0.454545	(0.44,0.476]	chr1	42211	14	INTRON	INTRON	NADK	ENSG00000008130.15	ENST00000378625.5:ENST00000341991.7:ENST00000341426.9:ENST00000492845.6:ENST00000492768.5:ENST00000460602.5:ENST00000464373.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	46	2	1.81595	2.27829	2.74063	0.0317953	0.0176095	0.14477	0.105143
chr11	3751819	3751918	4894705	0	-	0.464646	(0.44,0.476]	chr11	458870	68	INTRON	INTRON	NUP98	ENSG00000110713.17	ENST00000359171.8:ENST00000324932.12:ENST00000650171.1:ENST00000355260.7:ENST00000397004.8:ENST00000397007.8:ENST00000527104.5:ENST00000529379.1:ENST00000397013.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	46	2	1.81595	2.27829	2.74063	0.0317953	0.0176095	0.14477	0.105143
chr5	37393014	37393113	2340527	0	+	0.444444	(0.44,0.476]	chr5	226221	5	INTRON	INTRON	WDR70	ENSG00000082068.9	ENST00000504564.1:ENST00000511906.5:ENST00000265107.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	46	2	1.81595	2.27829	2.74063	0.0317953	0.0176095	0.14477	0.105143
chr2	101849096	101849196	837585	0	+	0.46	(0.44,0.476]	chr2	93964	44	INTRON	INTRON	MAP4K4	ENSG00000071054.17	ENST00000324219.9:ENST00000350878.9:ENST00000425019.6:ENST00000625522.3:ENST00000413150.6:ENST00000634702.1:ENST00000456652.5:ENST00000347699.8:ENST00000417294.5:ENST00000627726.3:ENST00000476609.1:ENST00000421882.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	48	2	1.81283	2.278275	2.74372	0.0343005	0.0153007	0.135641	0.108569
chr20	5600802	5600900	7312241	0	-	0.489796	(0.476,0.515]	chr20	744612	16	INTRON	INTRON	GPCPD1	ENSG00000125772.14	ENST00000379019.7:ENST00000481690.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	56	2	2.07116	2.278215	2.48527	0.03496	0.00731321	0.13747500000000001	0.076234
chr10	73068245	73068345	4647555	0	-	0.38	(0.378,0.408]	chr10	427530	143	INTRON	INTRON	P4HA1	ENSG00000122884.13	ENST00000394890.7:ENST00000307116.6:ENST00000373008.6:ENST00000440381.5:ENST00000263556.3	protein_coding	protein_coding	protein_coding	protein_coding	9	77	2	1.27711	2.278165	3.27922	0.0441401	0.00312717	0.162255	0.0499153
chr6	34633601	34633701	3085586	0	-	0.45	(0.44,0.476]	chr6	288679	263	INTRON	INTRON	ILRUN	ENSG00000196821.10	ENST00000374026.7:ENST00000374023.8:ENST00000374021.1	protein_coding	protein_coding	protein_coding	protein_coding	4	46	2	1.69402	2.278165	2.86231	0.0456129	0.012214	0.164236	0.0910127
chr9	133251333	133251432	4369783	0	-	0.474747	(0.44,0.476]	chr9	402031	16	EXON_LNCRNA	EXON_LNCRNA:SS3_PROX:INTRON	ABO	ENSG00000175164.16	ENST00000679909.1:ENST00000680600.1:ENST00000453660.4:ENST00000647353.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	46	2	1.69402	2.278165	2.86231	0.0456129	0.012214	0.164236	0.0910127
chr21	34874961	34875061	7447134	0	-	0.44	(0.408,0.44]	chr21	759849	150	INTRON	INTRON	RUNX1	ENSG00000159216.19	ENST00000300305.7:ENST00000675419.1:ENST00000437180.5:ENST00000344691.8:ENST00000482318.5:ENST00000399240.5:ENST00000358356.9:ENST00000399237.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	53	2	1.55035	2.27815	3.00595	0.0455214	0.00781452	0.164236	0.0759016
chr19	12941475	12941572	7022499	0	+	0.556701	(0.515,0.57]	chr19	698295	1	INTRON	INTRON	CALR	ENSG00000179218.15	ENST00000316448.10:ENST00000586967.2:ENST00000586760.2:ENST00000680816.1:ENST00000588454.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	54	533	2	2.13317	2.278145	2.42312	1.38773e-4	3.73833e-6	0.0107072	0.00126866
chr5	139318607	139318707	2499641	0	+	0.5	(0.476,0.515]	chr5	238946	3	SS3_PROX	SS3_PROX:INTRON	MATR3	ENSG00000280987.4:ENSG00000015479.20	ENST00000509990.5:ENST00000361059.7:ENST00000394800.6:ENST00000502929.5:ENST00000504203.5:ENST00000512876.5:ENST00000504311.5:ENST00000502499.5:ENST00000510056.5:ENST00000511249.5:ENST00000394805.8:ENST00000509918.5:ENST00000503811.5:ENST00000511978.5:ENST00000618441.5:ENST00000504643.5:ENST00000515833.2:ENST00000505625.5:ENST00000502422.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	69	2	1.31026	2.27811	3.24596	0.046104	0.00322919	0.165623	0.0507087
chr16	70120919	70121019	6383499	0	+	0.36	(0.35,0.378]	chr16	613458	2	SS5_PROX	SS5_PROX:INTRON	PDPR	ENSG00000090857.14	ENST00000288050.9:ENST00000561920.5:ENST00000568530.5:ENST00000398122.7:ENST00000565186.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	68	2	1.7942	2.27806	2.76192	0.0378648	0.00265021	0.141212	0.0474328
chr16	71916139	71916228	6386816	0	+	0.382022	(0.378,0.408]	chr16	614092	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	IST1	ENSG00000182149.21	ENST00000568581.5:ENST00000540296.5:ENST00000544564.5:ENST00000541571.6:ENST00000538104.5:ENST00000535424.5:ENST00000606369.5:ENST00000537613.5:ENST00000424485.6:ENST00000566536.5:ENST00000378799.11:ENST00000538565.5:ENST00000329908.12:ENST00000538850.5:ENST00000541918.5:ENST00000378798.9:ENST00000534994.5:ENST00000539186.5:ENST00000439924.6:ENST00000626438.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	14	159	2	1.98774	2.27806	2.56838	0.001399	0.0010901	0.0342469	0.0303873
chr9	131224806	131224905	4216655	0	+	0.373737	(0.35,0.378]	chr9	386685	15	INTRON	INTRON	NUP214	ENSG00000126883.19	ENST00000695497.1:ENST00000695498.1:ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000524578.6:ENST00000453861.6:ENST00000483497.6:ENST00000695500.1:ENST00000650694.1:ENST00000695501.1:ENST00000530491.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	58	2	2.10859	2.2780449999999997	2.4475	0.0272722	0.0106974	0.136494	0.0862205
chr10	63451308	63451408	4635245	0	-	0.36	(0.35,0.378]	chr10	426236	705	INTRON	INTRON	JMJD1C	ENSG00000171988.20	ENST00000399262.7:ENST00000633035.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	64	2	1.34146	2.27801	3.21456	0.0634598	0.00420814	0.19806000000000001	0.0572185
chr13	25341233	25341332	5457594	0	+	0.373737	(0.35,0.378]	chr13	522982	12	UTR3	UTR3:EXON_MRNA:INTRON	NUP58	ENSG00000139496.17	ENST00000481980.2:ENST00000490231.6:ENST00000695571.1:ENST00000477876.2:ENST00000695572.1:ENST00000695573.1:ENST00000381736.8:ENST00000381718.8:ENST00000695575.1:ENST00000695574.1:ENST00000695576.1:ENST00000695577.1:ENST00000476553.2:ENST00000695578.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	68	2	1.87726	2.278	2.67874	0.0297629	0.00373022	0.12908	0.0561984
chr15	80079615	80079715	6071238	0	+	0.37	(0.35,0.378]	chr15	578322	39	INTRON	INTRON	ZFAND6	ENSG00000086666.19	ENST00000613266.4:ENST00000561060.5:ENST00000559157.5:ENST00000261749.11:ENST00000561012.5:ENST00000564367.5:ENST00000558494.5:ENST00000618205.4:ENST00000560470.5:ENST00000560228.5:ENST00000559835.5:ENST00000559775.5:ENST00000558688.5:ENST00000560976.5:ENST00000560392.5:ENST00000558390.5:ENST00000558272.5:ENST00000557793.1:ENST00000616533.4:ENST00000558087.5:ENST00000558997.5:ENST00000558724.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	57	2	1.87717	2.277955	2.67874	0.0555068	0.00373022	0.165463	0.0561984
chr3	177181392	177181492	1872288	0	-	0.5	(0.476,0.515]	chr3	187438	101	INTRON	INTRON	TBL1XR1	ENSG00000177565.18	ENST00000457928.7:ENST00000430069.5:ENST00000673974.1:ENST00000352800.10:ENST00000422442.6:ENST00000428970.5:ENST00000424913.5:ENST00000437738.5:ENST00000431421.5:ENST00000635794.1:ENST00000630796.2:ENST00000450267.5:ENST00000630833.2:ENST00000431674.5:ENST00000422066.5:ENST00000443315.5:ENST00000627825.2:ENST00000427349.5:ENST00000413084.5:ENST00000637137.1:ENST00000491623.2:ENST00000637544.1:ENST00000636187.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	9	108	2	1.98495	2.277765	2.57058	0.00740375	7.29232e-4	0.0743293	0.0246094
chr2	69940168	69940267	805764	0	+	0.353535	(0.35,0.378]	chr2	89939	20	UTR3	UTR3:EXON_MRNA:INTRON	MXD1	ENSG00000059728.11	ENST00000540449.5:ENST00000264444.7:ENST00000465446.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	166	2	2.14192	2.27776	2.4136	0.00136305	0.0010933	0.0336321	0.0302914
chr7	96151578	96151678	3574534	0	-	0.3	(0.28,0.32]	chr7	332994	45	INTRON	INTRON	SLC25A13	ENSG00000004864.14	ENST00000265631.10:ENST00000416240.6:ENST00000490072.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	49	2	1.81582	2.277635	2.73945	0.068122	0.017681	0.184298	0.11319
chr19	938528	938628	6992615	0	+	0.54	(0.515,0.57]	chr19	692392	54	INTRON	INTRON	ARID3A	ENSG00000116017.11	ENST00000263620.8:ENST00000587532.5:ENST00000457152.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	55	2	1.2997	2.277585	3.25547	0.0561321	0.00261721	0.18407	0.0455413
chr4	2404243	2404343	2099587	0	-	0.56	(0.515,0.57]	chr4	207734	395	INTRON	INTRON	ZFYVE28	ENSG00000159733.14	ENST00000290974.7:ENST00000511071.5:ENST00000509171.5:ENST00000503000.1:ENST00000508184.5	protein_coding	protein_coding	protein_coding	protein_coding	5	53	2	2.17039	2.2775749999999997	2.38476	0.0110593	0.00900252	0.0873897	0.0851009
chr2	216118294	216118376	1014435	0	+	0.451219	(0.44,0.476]	chr2	107952	1	INTRON	INTRON	XRCC5	ENSG00000079246.16	ENST00000392133.7:ENST00000429133.5:ENST00000392132.7:ENST00000417391.1:ENST00000451695.5:ENST00000460284.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	47	2	1.66462	2.277545	2.89047	0.0520247	0.00955699	0.159508	0.0863913
chr1	146151305	146151404	541398	0	-	0.373737	(0.35,0.378]	chr1	63532	32	INTRON	INTRON	NOTCH2NLA	ENSG00000264343.7	ENST00000579793.6	protein_coding	protein_coding	protein_coding	protein_coding	4	57	2	2.23043	2.2775350000000003	2.32464	0.0187487	0.0159285	0.117523	0.101453
chr16	23421590	23421689	6463766	0	-	0.414141	(0.408,0.44]	chr16	623765	24	INTRON	INTRON	COG7	ENSG00000168434.13	ENST00000307149.10	protein_coding	protein_coding	protein_coding	protein_coding	6	59	2	1.49789	2.27747	3.05705	0.0390091	0.00658331	0.161009	0.0701901
chr10	63149072	63149171	4436139	0	+	0.363636	(0.35,0.378]	chr10	409219	24	INTRON	INTRON	NRBF2	ENSG00000148572.16	ENST00000435510.6:ENST00000277746.11	protein_coding	protein_coding	protein_coding	protein_coding	3	42	2	2.23043	2.27743	2.32443	0.0544216	0.0187487	0.164972	0.117523
chr16	47475759	47475859	6343446	0	+	0.37	(0.35,0.378]	chr16	608849	114	INTRON	INTRON	PHKB	ENSG00000102893.17	ENST00000566037.6:ENST00000566044.5:ENST00000299167.12:ENST00000696809.1:ENST00000323584.10:ENST00000565424.2:ENST00000567402.5:ENST00000563376.5:ENST00000564873.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	42	2	2.23043	2.27743	2.32443	0.0544216	0.0187487	0.164972	0.117523
chr7	43656815	43656915	3525648	0	-	0.37	(0.35,0.378]	chr7	328762	2	SS5_PROX	SS5_PROX:INTRON	COA1	ENSG00000106603.20	ENST00000415076.6:ENST00000446330.6:ENST00000446564.5:ENST00000438444.5:ENST00000223336.11:ENST00000310564.10:ENST00000415798.5:ENST00000431651.5:ENST00000451651.5:ENST00000418140.5:ENST00000448704.5:ENST00000470156.1:ENST00000457939.1:ENST00000420441.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	42	2	2.23043	2.27743	2.32443	0.0544216	0.0187487	0.164972	0.117523
chr7	65899332	65899432	3323138	0	+	0.45	(0.44,0.476]	chr7	309012	254	INTRON	INTRON	VKORC1L1	ENSG00000196715.7	ENST00000360768.5:ENST00000648187.1:ENST00000648179.1:ENST00000434382.2	protein_coding	protein_coding	protein_coding	protein_coding	8	95	2	1.72944	2.277375	2.82531	0.0196145	5.00634e-4	0.109486	0.020217099999999998
chr6	169665916	169665986	3266755	0	-	0.4	(0.378,0.408]	chr6	303219	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	WDR27	ENSG00000184465.16	ENST00000448612.6:ENST00000648472.1:ENST00000423258.5:ENST00000647790.1:ENST00000546525.5:ENST00000647873.1:ENST00000649303.1:ENST00000647889.1:ENST00000648017.1:ENST00000486490.1:ENST00000496752.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	117	2	1.70456	2.277325	2.85009	0.0108115	6.76594e-4	0.0920575	0.0238119
chrX	78123001	78123094	7687214	0	+	0.311828	(0.28,0.32]	chrX	787028	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PGK1	ENSG00000102144.15	ENST00000644362.1:ENST00000373316.5:ENST00000474281.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	78	2	1.87474	2.2772449999999997	2.67975	0.0252505	0.0115687	0.12011	0.0962115
chr2	131211683	131211781	865475	0	+	0.489796	(0.476,0.515]	chr2	97182	1	INTRON	INTRON	PLEKHB2:POTEE	ENSG00000115762.17:ENSG00000188219.16	ENST00000404460.5:ENST00000683005.1	protein_coding	protein_coding	protein_coding	protein_coding	15	174	2	1.83518	2.277195	2.71921	0.00463761	8.08724e-5	0.0600108	0.00751718
chr17	75217307	75217401	6674382	0	+	0.457447	(0.44,0.476]	chr17	651375	11	INTRON	INTRON	NUP85	ENSG00000125450.11	ENST00000245544.9:ENST00000583948.5:ENST00000579324.5:ENST00000449421.6:ENST00000581104.5:ENST00000579298.5:ENST00000578830.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	96	2	1.85696	2.277155	2.69735	0.0107727	0.00125459	0.0920575	0.0323608
chr18	36165519	36165617	6891804	0	+	0.377551	(0.35,0.378]	chr18	683067	4	INTRON	INTRON	ELP2	ENSG00000134759.14	ENST00000351393.10:ENST00000442325.6:ENST00000358232.11:ENST00000423854.6:ENST00000539560.5:ENST00000350494.10:ENST00000542824.5:ENST00000540766.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	138	2	1.75462	2.2770799999999998	2.79954	0.0057845	9.3505e-4	0.0684334	0.0280583
chr1	502955	503055	355590	0	-	0.52	(0.515,0.57]	chr1	41002	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	ENSG00000237094	ENSG00000237094.12	ENST00000641303.1:ENST00000641063.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	10	101	2	2.03371	2.277055	2.5204	0.00308285	9.8022e-4	0.0510391	0.0285591
chr11	762447	762546	4720492	0	+	0.494949	(0.476,0.515]	chr11	436412	16	INTRON	INTRON	TALDO1	ENSG00000177156.11	ENST00000528070.5:ENST00000528097.5:ENST00000530440.1:ENST00000319006.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	108	2	2.18874	2.27693	2.36512	0.00255859	0.00246559	0.0466761	0.0446195
chr2	113929132	113929230	854639	0	+	0.377551	(0.35,0.378]	chr2	95917	13	INTRON	INTRON	ACTR3	ENSG00000115091.12	ENST00000443297.5:ENST00000263238.7:ENST00000415792.5:ENST00000446821.5:ENST00000535589.3:ENST00000489779.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	102	2	1.79033	2.27693	2.76353	0.0077887	0.00343059	0.0787356	0.0517761
chr16	23417717	23417813	6463726	0	-	0.385417	(0.378,0.408]	chr16	623759	2	INTRON	INTRON	COG7	ENSG00000168434.13	ENST00000307149.10	protein_coding	protein_coding	protein_coding	protein_coding	13	155	2	1.18423	2.276875	3.36952	0.0582735	6.26735e-6	0.167723	0.00175994
chr14	102728582	102728681	5823908	0	+	0.484848	(0.476,0.515]	chr14	552550	22	UTR3	UTR3:EXON_MRNA	RCOR1	ENSG00000089902.10	ENST00000262241.7	protein_coding	protein_coding	protein_coding	protein_coding	3	38	2	1.99341	2.2768699999999997	2.56033	0.037389	0.0287634	0.155878	0.127066
chr15	57008080	57008180	6033007	0	+	0.48	(0.476,0.515]	chr15	574669	63	INTRON	INTRON	TCF12	ENSG00000140262.18	ENST00000438423.6:ENST00000267811.9:ENST00000333725.10:ENST00000560190.5:ENST00000559609.5:ENST00000558908.5:ENST00000557843.5:ENST00000557947.5:ENST00000561152.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	38	2	1.99341	2.2768699999999997	2.56033	0.037389	0.0287634	0.155878	0.127066
chr17	78776908	78777007	6845782	0	-	0.50505	(0.476,0.515]	chr17	677345	401	INTRON	INTRON	CYTH1	ENSG00000108669.17	ENST00000589296.5:ENST00000361101.8:ENST00000446868.8:ENST00000591455.5:ENST00000591574.5:ENST00000592497.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	38	2	1.99341	2.2768699999999997	2.56033	0.037389	0.0287634	0.155878	0.127066
chr19	3440769	3440869	7000376	0	+	0.48	(0.476,0.515]	chr19	694202	52	INTRON	INTRON	NFIC	ENSG00000141905.19	ENST00000641145.1:ENST00000589123.5:ENST00000395111.7:ENST00000586919.5:ENST00000341919.7:ENST00000443272.3:ENST00000590282.5:ENST00000589537.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	38	2	1.99341	2.2768699999999997	2.56033	0.037389	0.0287634	0.155878	0.127066
chr20	37083422	37083522	7339444	0	-	0.48	(0.476,0.515]	chr20	747929	10	INTRON	INTRON	RBL1	ENSG00000080839.12	ENST00000373664.8:ENST00000344359.7:ENST00000527999.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	38	2	1.99341	2.2768699999999997	2.56033	0.037389	0.0287634	0.155878	0.127066
chr2	61226071	61226170	1128030	0	-	0.474747	(0.44,0.476]	chr2	121180	24	INTRON	INTRON	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000411912.5:ENST00000463046.5:ENST00000472706.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	98	2	1.96975	2.27686	2.58397	0.0123514	6.72874e-4	0.0914865	0.023543
chr9	124754532	124754631	4349048	0	-	0.434343	(0.408,0.44]	chr9	399261	208	INTRON	INTRON	NR6A1	ENSG00000148200.17	ENST00000487099.7:ENST00000373584.7:ENST00000416460.6:ENST00000344523.8	protein_coding	protein_coding	protein_coding	protein_coding	6	76	2	1.87977	2.276845	2.67392	0.0282738	0.00106946	0.125825	0.0300133
chr16	88729437	88729535	6539632	0	-	0.561224	(0.515,0.57]	chr16	633912	14	INTRON	INTRON	PIEZO1	ENSG00000103335.22	ENST00000301015.14	protein_coding	protein_coding	protein_coding	protein_coding	4	40	2	1.56681	2.27679	2.98677	0.064862	0.00632549	0.179394	0.0722266
chr6	167912256	167912348	3035208	0	+	0.228261	[0,0.28]	chr6	282795	2	INTRON	INTRON	AFDN	ENSG00000130396.21	ENST00000683244.1:ENST00000351017.9:ENST00000344191.8:ENST00000392112.5:ENST00000392108.7:ENST00000400822.7:ENST00000447894.6:ENST00000366809.6:ENST00000366806.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	115	2	1.62991	2.276785	2.92366	0.0671202	5.54251e-4	0.183051	0.0214207
chr15	56937288	56937388	6032298	0	+	0.3	(0.28,0.32]	chr15	574663	158	INTRON	INTRON	TCF12	ENSG00000140262.18	ENST00000438423.6:ENST00000267811.9:ENST00000333725.10:ENST00000560190.5:ENST00000559609.5:ENST00000558908.5:ENST00000557843.5:ENST00000557947.5:ENST00000561152.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	110	2	1.75919	2.27676	2.79433	0.0300418	8.00952e-4	0.129138	0.0258804
chr3	15048775	15048875	1372809	0	+	0.38	(0.378,0.408]	chr3	144690	59	UTR3	UTR3:EXON_MRNA:INTRON	NR2C2	ENSG00000177463.16	ENST00000425241.6:ENST00000617312.4:ENST00000439011.5:ENST00000413194.1	protein_coding	protein_coding	protein_coding	protein_coding	5	65	2	2.16303	2.276755	2.39048	0.0252473	0.00395852	0.12011	0.057511
chr3	138790374	138790473	1831055	0	-	0.464646	(0.44,0.476]	chr3	184056	199	INTRON	INTRON	PIK3CB	ENSG00000051382.9	ENST00000674063.1:ENST00000477593.5:ENST00000462898.5:ENST00000483968.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	121	2	1.98356	2.27674	2.56992	0.00757232	0.00035449500000000003	0.0749063	0.0168579
chr8	98044727	98044826	3995407	0	-	0.535354	(0.515,0.57]	chr8	365924	4	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	RPL30	ENSG00000156482.11	ENST00000518164.5:ENST00000518850.5:ENST00000287038.8:ENST00000396070.6:ENST00000521291.5:ENST00000523172.5:ENST00000521726.1:ENST00000517489.1:ENST00000520998.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	45	2	2.20213	2.27669	2.35125	0.0436431	0.00853365	0.162255	0.0780043
chr10	22703037	22703137	4580389	0	-	0.5	(0.476,0.515]	chr10	422046	85	INTRON	INTRON	PIP4K2A	ENSG00000150867.14	ENST00000376573.9:ENST00000545335.5	protein_coding	protein_coding	protein_coding	protein_coding	3	39	2	2.23335	2.27668	2.32001	0.0634557	0.0136217	0.177047	0.101682
chr9	112265471	112265570	4317275	0	-	0.383838	(0.378,0.408]	chr9	397060	25	INTRON	INTRON	PTBP3	ENSG00000119314.16	ENST00000334318.10:ENST00000458258.5:ENST00000374257.6:ENST00000374255.6:ENST00000343327.6:ENST00000487997.1:ENST00000210227.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	61	2	1.54765	2.276665	3.00568	0.0334147	0.00811866	0.146709	0.0766625
chr3	6598044	6598144	1357224	0	+	0.42	(0.408,0.44]	chr3	142522	136	INTRON	INTRON	ENSG00000189229	ENSG00000189229.12	ENST00000433639.1:ENST00000655754.1:ENST00000658468.1:ENST00000669512.1:ENST00000667028.1:ENST00000655541.1:ENST00000668643.1:ENST00000671568.1:ENST00000671036.1:ENST00000669798.1:ENST00000655753.1:ENST00000655856.1:ENST00000658398.1:ENST00000661518.1:ENST00000661279.1:ENST00000655495.1:ENST00000663041.1:ENST00000659827.1:ENST00000667716.1:ENST00000668416.1:ENST00000658133.1:ENST00000342990.4:ENST00000660054.1:ENST00000671370.1	lncRNA	lncRNA	lncRNA	lncRNA	9	120	2	1.66945	2.27665	2.88385	0.0218479	2.08663e-4	0.123836	0.0131276
chr7	123748317	123748417	3632654	0	-	0.62	(0.57,1]	chr7	337582	3	SS5_PROX	SS5_PROX:INTRON	WASL	ENSG00000106299.8	ENST00000223023.5	protein_coding	protein_coding	protein_coding	protein_coding	5	35	2	1.9042	2.276615	2.64903	0.0476976	9.85026e-4	0.153019	0.0288488
chr22	23234023	23234123	7483742	0	+	0.52	(0.515,0.57]	chr22	763541	343	INTRON	INTRON	BCR	ENSG00000186716.21	ENST00000479188.5:ENST00000359540.7:ENST00000305877.13:ENST00000463770.5:ENST00000487679.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	55	2	1.7492	2.2766	2.804	0.0382504	0.00215855	0.15832	0.0417866
chr9	131420707	131420807	4217236	0	+	0.57	(0.515,0.57]	chr9	386720	261	INTRON	INTRON	PRRC2B	ENSG00000288701.1	ENST00000682525.1:ENST00000684596.1:ENST00000683519.1:ENST00000682501.1	protein_coding	protein_coding	protein_coding	protein_coding	5	55	2	1.7492	2.2766	2.804	0.0382504	0.00215855	0.15832	0.0417866
chr7	23509817	23509916	3503729	0	-	0.525253	(0.515,0.57]	chr7	326946	19	INTRON	INTRON	TRA2A	ENSG00000164548.12	ENST00000297071.9:ENST00000392502.8:ENST00000538367.6:ENST00000621813.4:ENST00000494255.5:ENST00000474586.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	41	2	2.11724	2.2765649999999997	2.43589	0.0370871	0.0110335	0.139194	0.0927187
chr17	27099812	27099912	6579823	0	+	0.4	(0.378,0.408]	chr17	639586	30	INTRON	INTRON	ENSG00000285822	ENSG00000285822.1	ENST00000649401.1	lncRNA	lncRNA	lncRNA	lncRNA	7	82	2	1.78414	2.276535	2.76893	0.0144669	0.00316735	0.105142	0.0503085
chr2	197953868	197953968	970595	0	+	0.38	(0.378,0.408]	chr2	104858	1432	INTRON	INTRON	PLCL1	ENSG00000115896.16	ENST00000428675.6:ENST00000435320.1:ENST00000487695.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	65	2	1.98888	2.2764800000000003	2.56408	0.0205239	0.00566993	0.110999	0.0678837
chr16	87862293	87862392	6539025	0	-	0.575758	(0.57,1]	chr16	633643	101	INTRON	INTRON	SLC7A5	ENSG00000103257.9	ENST00000261622.5:ENST00000565644.5	protein_coding	protein_coding	protein_coding	protein_coding	6	39	2	2.09207	2.27645	2.46083	0.0121228	0.00255312	0.090965	0.0466386
chr9	120827506	120827605	4335596	0	-	0.262626	[0,0.28]	chr9	398298	2	INTRON	INTRON	PSMD5	ENSG00000095261.14	ENST00000210313.8:ENST00000373904.5:ENST00000496688.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	55	2	2.05756	2.276415	2.49527	0.0436497	0.0352544	0.150301	0.14882
chr17	47145866	47145965	6788942	0	-	0.50505	(0.476,0.515]	chr17	669573	15	INTRON	INTRON	CDC27	ENSG00000004897.12	ENST00000066544.8:ENST00000531206.5:ENST00000533415.5:ENST00000527547.5:ENST00000526866.5:ENST00000525495.6:ENST00000574304.5:ENST00000575830.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	97	2	2.12058	2.276405	2.43223	0.00686728	0.00145905	0.071646	0.0349875
chr8	90012152	90012252	3791867	0	+	0.49	(0.476,0.515]	chr8	351697	55	INTRON	INTRON	DECR1	ENSG00000104325.7	ENST00000519328.5:ENST00000517314.5:ENST00000521603.5:ENST00000523447.5:ENST00000517597.5:ENST00000519410.5:ENST00000220764.7:ENST00000522161.5:ENST00000519007.5:ENST00000521668.1:ENST00000518725.5:ENST00000517761.5:ENST00000520227.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	97	2	2.14989	2.276395	2.4029	0.00611105	0.0016811	0.0676501	0.0381232
chr10	60783854	60783942	4435822	0	+	0.340909	(0.32,0.35]	chr10	409174	4	INTRON	INTRON	CDK1	ENSG00000170312.17	ENST00000519078.6:ENST00000475504.6:ENST00000316629.8:ENST00000395284.8:ENST00000448257.6:ENST00000373809.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	55	2	2.10695	2.276375	2.4458	0.0425977	0.0127483	0.148082	0.0987441
chr6	108257964	108258064	3184586	0	-	0.26	[0,0.28]	chr6	296565	346	INTRON	INTRON	SNX3	ENSG00000112335.15	ENST00000230085.13:ENST00000368979.6:ENST00000426155.6:ENST00000349379.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	55	2	2.00649	2.276365	2.54624	0.040391	0.0388449	0.161534	0.143072
chr10	42341155	42341255	4603185	0	-	0.5	(0.476,0.515]	chr10	424077	2	INTRON	INTRON	ENSG00000215146	ENSG00000215146.5	ENST00000609841.1:ENST00000650175.1:ENST00000423987.2:ENST00000609034.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	7	85	2	2.02889	2.276345	2.5238	0.00978617	0.00218334	0.0835427	0.0435144
chr2	171924153	171924250	918374	0	+	0.329897	(0.32,0.35]	chr2	101174	17	EXON_MRNA	EXON_MRNA:INTRON	HAT1	ENSG00000128708.13	ENST00000412731.5:ENST00000264108.5:ENST00000457761.6:ENST00000494601.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	83	2	1.95408	2.276315	2.59855	0.0124054	0.00682041	0.0973643	0.0712518
chr19	16626983	16627080	7150461	0	-	0.587629	(0.57,1]	chr19	722417	25	INTRON	INTRON	MED26	ENSG00000105085.11	ENST00000263390.8:ENST00000611692.4:ENST00000598608.1:ENST00000600060.1	protein_coding	protein_coding	protein_coding	protein_coding	6	39	2	2.24434	2.276295	2.30825	0.00677343	0.00499769	0.074225	0.0617433
chr3	194469138	194469238	1891022	0	-	0.47	(0.44,0.476]	chr3	189246	10	INTRON	INTRON	ATP13A3	ENSG00000133657.17	ENST00000687055.1:ENST00000645538.1:ENST00000645319.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	151	2	2.12651	2.2762450000000003	2.42598	0.00106845	0.00106818	0.0300133	0.0300066
chr22	21862422	21862522	7561334	0	-	0.5	(0.476,0.515]	chr22	773388	542	INTRON	INTRON	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	14	168	2	2.17997	2.276235	2.3725	0.00113453	5.6462e-4	0.0308844	0.021937
chr3	19951701	19951798	1376081	0	+	0.453608	(0.44,0.476]	chr3	145050	1	EXON_LNCRNA	EXON_LNCRNA:INTRON	RAB5A:ENSG00000289138	ENSG00000144566.11:ENSG00000289138.1	ENST00000273047.9:ENST00000412966.5:ENST00000446547.5:ENST00000422242.1:ENST00000469122.5:ENST00000686250.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA	29	323	2	2.04861	2.276235	2.50386	2.55404e-4	1.1571e-4	0.0142249	0.00969923
chr8	95046047	95046147	3802273	0	+	0.39	(0.378,0.408]	chr8	352594	4	SS5_PROX	SS5_PROX:INTRON	NDUFAF6	ENSG00000156170.13	ENST00000523378.5:ENST00000396113.5:ENST00000519136.5:ENST00000396111.6:ENST00000396124.9:ENST00000518258.5:ENST00000523337.5:ENST00000517976.5:ENST00000520632.5:ENST00000520757.1:ENST00000454358.6:ENST00000518608.5:ENST00000519804.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	41	2	2.00398	2.276235	2.54849	0.0393906	0.0273196	0.143072	0.136494
chr22	19108153	19108253	7551872	0	-	0.3	(0.28,0.32]	chr22	771903	183	INTRON	INTRON	DGCR2	ENSG00000070413.20	ENST00000537045.5:ENST00000545799.5:ENST00000263196.12:ENST00000389262.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	122	2	2.00786	2.27622	2.54458	0.00687366	0.00354525	0.0749442	0.0529186
chr1	65289882	65289981	135892	0	+	0.525253	(0.515,0.57]	chr1	15346	246	INTRON	INTRON	DNAJC6	ENSG00000116675.16	ENST00000463018.5:ENST00000494710.6:ENST00000263441.11:ENST00000395325.7:ENST00000483402.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	54	2	2.15866	2.276085	2.39351	0.0100547	0.0100431	0.0881096	0.0848452
chr20	34893468	34893568	7261154	0	+	0.39	(0.378,0.408]	chr20	737647	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	ACSS2	ENSG00000131069.20	ENST00000481971.5:ENST00000488172.5:ENST00000497927.5:ENST00000481284.5:ENST00000475459.6:ENST00000484354.1:ENST00000480274.1:ENST00000477932.5:ENST00000473172.5:ENST00000493805.6:ENST00000480978.5:ENST00000360596.7:ENST00000467019.5:ENST00000253382.5:ENST00000476922.5:ENST00000464399.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	103	2	1.85455	2.276055	2.69756	0.0192049	3.80456e-4	0.108861	0.0176313
chr4	51904589	51904688	1959183	0	+	0.414141	(0.408,0.44]	chr4	196348	49	INTRON	INTRON	DCUN1D4	ENSG00000109184.15	ENST00000509376.5:ENST00000381441.7:ENST00000334635.10:ENST00000507741.5:ENST00000477560.5:ENST00000451288.6:ENST00000510587.5:ENST00000507659.5:ENST00000505634.5:ENST00000510808.1:ENST00000512199.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	40	2	2.05947	2.2760249999999997	2.49258	0.0333232	0.0314608	0.144381	0.134145
chr17	82908488	82908587	6695809	0	+	0.363636	(0.35,0.378]	chr17	655016	5	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	TBCD	ENSG00000141556.22	ENST00000682479.1:ENST00000682722.1:ENST00000684464.1:ENST00000684544.1:ENST00000681983.1:ENST00000684361.1:ENST00000683184.1:ENST00000683282.1:ENST00000684408.1:ENST00000355528.9:ENST00000683444.1:ENST00000684776.1:ENST00000683041.1:ENST00000684760.1:ENST00000684349.1:ENST00000682213.1:ENST00000539345.6:ENST00000684000.1:ENST00000684188.1:ENST00000684429.1:ENST00000682610.1:ENST00000683821.1:ENST00000682654.1:ENST00000576160.6:ENST00000571712.5:ENST00000576996.5:ENST00000574801.5:ENST00000683584.1:ENST00000682099.1:ENST00000684559.1:ENST00000571316.5:ENST00000576760.5:ENST00000572984.5:ENST00000683839.1:ENST00000574975.5:ENST00000572953.5:ENST00000571796.5:ENST00000682315.1:ENST00000574422.1:ENST00000682225.1:ENST00000576677.6:ENST00000571618.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	42	2	1.75561	2.27602	2.79643	0.0739399	0.013543	0.190914	0.101363
chr17	66350446	66350546	6662776	0	+	0.24	[0,0.28]	chr17	650324	105	INTRON	INTRON	PRKCA	ENSG00000154229.12	ENST00000413366.8:ENST00000578063.5:ENST00000284384.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	76	2	2.24546	2.275935	2.30641	0.0213596	0.0206502	0.122348	0.113755
chr7	121184131	121184231	3395610	0	+	0.31	(0.28,0.32]	chr7	317781	341	INTRON	INTRON	CPED1	ENSG00000106034.18	ENST00000310396.10:ENST00000450913.6:ENST00000423795.5:ENST00000466055.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	79	2	2.21798	2.2758950000000002	2.33381	0.0174951	0.00901091	0.104863	0.0851009
chr11	68497757	68497857	4817703	0	+	0.32	(0.28,0.32]	chr11	448907	366	INTRON	INTRON	PPP6R3	ENSG00000110075.15	ENST00000530427.5:ENST00000528635.5:ENST00000529907.5:ENST00000533127.5:ENST00000534534.5:ENST00000529344.5:ENST00000524845.5:ENST00000393800.7:ENST00000265637.8:ENST00000524904.5:ENST00000393801.7:ENST00000265636.9:ENST00000529710.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	79	2	2.18212	2.275875	2.36963	0.0157022	0.010265700000000001	0.101453	0.089002
chr20	35702717	35702815	7336133	0	-	0.540816	(0.515,0.57]	chr20	747390	15	UTR3	UTR3:EXON_MRNA	RBM39	ENSG00000131051.24	ENST00000253363.11:ENST00000639702.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	57	2	2.11313	2.275865	2.4386	0.0256725	0.00326739	0.133676	0.0508595
chr1	29070265	29070363	60537	0	+	0.357143	(0.35,0.378]	chr1	7745	11	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000647918.1:ENST00000646800.1:ENST00000644342.1:ENST00000646189.1:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000373798.5:ENST00000644600.1:ENST00000649674.1:ENST00000643173.1:ENST00000343067.9:ENST00000644780.1:ENST00000650265.1:ENST00000643604.1:ENST00000349460.9:ENST00000645111.1:ENST00000643302.1:ENST00000636666.1:ENST00000644848.1:ENST00000646871.1:ENST00000488277.1:ENST00000490308.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	78	2	2.18494	2.275855	2.36677	0.0139343	0.0047516	0.0957526	0.0635784
chr1	213080710	213080809	310998	0	+	0.434343	(0.408,0.44]	chr1	35919	25	INTRON	INTRON	RPS6KC1	ENSG00000136643.12	ENST00000615329.4:ENST00000543354.5:ENST00000614059.4:ENST00000543470.5:ENST00000366960.8:ENST00000366959.4:ENST00000490299.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	39	2	2.27464	2.27581	2.27698	0.0583528	0.0158016	0.167723	0.109464
chr2	224543922	224544022	1335924	0	-	0.43	(0.408,0.44]	chr2	140151	79	INTRON	INTRON	CUL3	ENSG00000036257.14	ENST00000344951.8:ENST00000264414.9:ENST00000409096.5:ENST00000409777.5:ENST00000432260.2:ENST00000436172.1:ENST00000546102.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	39	2	2.27464	2.27581	2.27698	0.0583528	0.0158016	0.167723	0.109464
chr21	37082474	37082572	7404913	0	+	0.469388	(0.44,0.476]	chr21	754522	10	UTR5	UTR5:EXON_MRNA:INTRON	TTC3	ENSG00000182670.14	ENST00000492275.6:ENST00000418766.6:ENST00000485402.5:ENST00000450533.6:ENST00000438055.5:ENST00000696812.1:ENST00000696811.1:ENST00000463216.6:ENST00000481605.6:ENST00000540756.5:ENST00000494243.5:ENST00000399010.5:ENST00000411496.2:ENST00000399017.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	84	2	2.19078	2.275755	2.36073	0.0226089	0.00108744	0.117489	0.0301337
chr9	37125319	37125417	4117703	0	+	0.44898	(0.44,0.476]	chr9	375364	33	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000322831.6:ENST00000461038.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	110	2	1.37976	2.27574	3.17172	0.0229427	5.10693e-4	0.126008	0.020816
chr3	73022024	73022124	1452209	0	+	0.51	(0.476,0.515]	chr3	152962	60	INTRON	INTRON	PPP4R2	ENSG00000163605.15	ENST00000482242.5:ENST00000356692.10:ENST00000470976.1:ENST00000488810.5:ENST00000476505.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	62	2	2.21677	2.275685	2.3346	0.0207026	0.00494807	0.110999	0.0646039
chr12	67292121	67292221	5160728	0	+	0.49	(0.476,0.515]	chr12	488473	1	SS3_PROX	SS3_PROX:INTRON	CAND1	ENSG00000111530.13	ENST00000545606.6:ENST00000539434.1:ENST00000540525.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	71	2	1.54629	2.27568	3.00507	0.0484352	8.38796e-4	0.153635	0.0263691
chr19	580197	580287	6991923	0	+	0.555556	(0.515,0.57]	chr19	692156	7	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	BSG	ENSG00000172270.22	ENST00000545507.6:ENST00000346916.9:ENST00000680065.1:ENST00000679472.1:ENST00000680552.1:ENST00000613627.5:ENST00000576925.4:ENST00000573216.5:ENST00000572899.6:ENST00000333511.9:ENST00000353555.9:ENST00000680326.1:ENST00000618006.4:ENST00000614867.2:ENST00000618112.4:ENST00000573784.6:ENST00000576984.3:ENST00000571735.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	53	2	2.22166	2.275665	2.32967	0.0133671	0.00735516	0.0946278	0.0765982
chr19	49106626	49106726	7088597	0	+	0.56	(0.515,0.57]	chr19	709569	15	INTRON	INTRON	SNRNP70	ENSG00000104852.15	ENST00000601065.5:ENST00000598441.6:ENST00000401730.5:ENST00000221448.9:ENST00000595231.5:ENST00000544278.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	53	2	2.06206	2.27554	2.48902	0.0135396	0.00760558	0.101363	0.0749571
chr2	172605669	172605769	920406	0	+	0.42	(0.408,0.44]	chr2	101391	98	UTR3	UTR3:EXON_MRNA	PDK1	ENSG00000152256.14	ENST00000282077.8	protein_coding	protein_coding	protein_coding	protein_coding	5	64	2	2.15938	2.2755	2.39162	0.011260300000000001	0.0105837	0.0911864	0.0884004
chr16	50105733	50105830	6347524	0	+	0.525773	(0.515,0.57]	chr16	609301	8	UTR3	UTR3:EXON_MRNA	HEATR3	ENSG00000155393.14	ENST00000299192.8:ENST00000693352.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	45	2	2.11313	2.27548	2.43783	0.0256725	0.00916404	0.133676	0.0812949
chr7	91947331	91947431	3351078	0	+	0.54	(0.515,0.57]	chr7	312180	58	INTRON	INTRON	AKAP9	ENSG00000127914.19	ENST00000680534.1:ENST00000680513.1:ENST00000680072.1:ENST00000679821.1:ENST00000679554.1:ENST00000356239.8:ENST00000679521.1:ENST00000680181.1:ENST00000681722.1:ENST00000680766.1:ENST00000679448.1:ENST00000681412.1:ENST00000680047.1:ENST00000679474.1:ENST00000680952.1:ENST00000679457.1:ENST00000679722.1:ENST00000680074.1:ENST00000493453.1:ENST00000394564.5:ENST00000674381.2:ENST00000359028.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	45	2	2.11313	2.27548	2.43783	0.0256725	0.00916404	0.133676	0.0812949
chr1	108702055	108702152	178232	0	+	0.391753	(0.378,0.408]	chr1	19368	22	UTR3	UTR3:EXON_MRNA	PRPF38B	ENSG00000134186.12	ENST00000370025.9	protein_coding	protein_coding	protein_coding	protein_coding	9	84	2	1.32474	2.275365	3.22599	0.0421106	0.00288652	0.148082	0.0494641
chr2	144402274	144402371	1240606	0	-	0.443299	(0.44,0.476]	chr2	131670	11	EXON_MRNA	EXON_MRNA:INTRON	ZEB2	ENSG00000169554.23	ENST00000636471.1:ENST00000627532.3:ENST00000638128.1:ENST00000637304.1:ENST00000636179.1:ENST00000636820.1:ENST00000637045.1:ENST00000636413.1:ENST00000638007.1:ENST00000638087.1:ENST00000419938.5:ENST00000409487.7:ENST00000440875.6:ENST00000636732.2:ENST00000636026.2:ENST00000675069.1:ENST00000689298.1:ENST00000539609.7:ENST00000558170.6:ENST00000303660.8:ENST00000675145.1:ENST00000427902.5:ENST00000637267.2:ENST00000392861.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	52	2	1.9039	2.275295	2.64669	0.0501498	0.0040295	0.156383	0.0578376
chr19	28428253	28428352	7165425	0	-	0.575758	(0.57,1]	chr19	724146	80	INTRON	INTRON	ENSG00000260725	ENSG00000260725.1	ENST00000567877.1	lncRNA	lncRNA	lncRNA	lncRNA	14	85	2	1.97514	2.275255	2.57537	0.00181814	1.12405e-4	0.0395402	0.00952172
chr10	1161864	1161955	4380202	0	+	0.549451	(0.515,0.57]	chr10	404008	9	INTRON	INTRON	LINC00200	ENSG00000229205.5	ENST00000425630.2:ENST00000652683.1:ENST00000655745.1:ENST00000647993.1:ENST00000666348.1	lncRNA	lncRNA	lncRNA	lncRNA	5	47	2	1.63907	2.275235	2.9114	0.0350277	0.00826019	0.137535	0.0813266
chr1	205608733	205608831	623266	0	-	0.336735	(0.32,0.35]	chr1	74129	9	UTR3	UTR3:EXON_MRNA:INTRON	ELK4	ENSG00000158711.14	ENST00000616704.4:ENST00000357992.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	100	2	2.27097	2.2751799999999998	2.27939	0.00844518	0.00347642	0.0776969	0.0540643
chr14	103464656	103464756	5826439	0	+	0.38	(0.378,0.408]	chr14	552873	18	INTRON	INTRON	MARK3	ENSG00000075413.19	ENST00000678179.1:ENST00000676838.1:ENST00000677348.1:ENST00000677404.1:ENST00000676694.1:ENST00000676938.1:ENST00000678619.1:ENST00000676897.1:ENST00000677214.1:ENST00000677942.1:ENST00000676830.1:ENST00000678999.1:ENST00000677228.1:ENST00000556744.2:ENST00000677104.1:ENST00000679330.1:ENST00000560417.6:ENST00000440884.7:ENST00000676475.1:ENST00000677035.1:ENST00000678022.1:ENST00000677560.1:ENST00000561314.6:ENST00000429436.7:ENST00000677118.1:ENST00000676564.1:ENST00000678169.1:ENST00000678175.1:ENST00000678897.1:ENST00000678278.1:ENST00000676645.1:ENST00000677829.1:ENST00000678302.1:ENST00000677133.1:ENST00000561164.2:ENST00000558223.6:ENST00000678207.1:ENST00000677360.1:ENST00000676905.1:ENST00000678343.1:ENST00000677347.1:ENST00000678071.1:ENST00000677432.1:ENST00000678237.1:ENST00000677604.1:ENST00000676518.1:ENST00000677051.1:ENST00000677857.1:ENST00000677869.1:ENST00000678423.1:ENST00000560603.6:ENST00000416682.6:ENST00000303622.13:ENST00000216288.11:ENST00000679105.1:ENST00000553942.5:ENST00000335102.9:ENST00000678091.1:ENST00000561071.5:ENST00000558698.5:ENST00000559268.5:ENST00000676745.1:ENST00000558611.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	56	2	1.43665	2.275125	3.1136	0.0669652	0.00443339	0.183051	0.061054
chr7	43700004	43700104	3526083	0	-	0.35	(0.32,0.35]	chr7	328779	339	INTRON	INTRON	COA1	ENSG00000106603.20	ENST00000415076.6:ENST00000446330.6:ENST00000446564.5:ENST00000438444.5:ENST00000223336.11:ENST00000310564.10:ENST00000415798.5:ENST00000431651.5:ENST00000451651.5:ENST00000418140.5:ENST00000448704.5:ENST00000470156.1:ENST00000457939.1:ENST00000420441.1:ENST00000478504.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	89	2	2.18777	2.275	2.36223	0.00951422	0.00625472	0.0863913	0.0684171
chr2	167920537	167920636	1259008	0	-	0.464646	(0.44,0.476]	chr2	133340	194	INTRON	INTRON	B3GALT1-AS1	ENSG00000235335.3	ENST00000430546.2:ENST00000657553.1:ENST00000670221.1:ENST00000436982.2	lncRNA	lncRNA	lncRNA	lncRNA	6	71	2	1.68545	2.274985	2.86452	0.0322071	0.00159222	0.132543	0.0367961
chr22	20849796	20849895	7559594	0	-	0.444444	(0.44,0.476]	chr22	773216	107	INTRON	INTRON	PI4KA	ENSG00000241973.11	ENST00000255882.11:ENST00000485963.5:ENST00000449120.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	71	2	1.68545	2.274985	2.86452	0.0322071	0.00159222	0.132543	0.0367961
chr12	122209165	122209265	5439537	0	-	0.49	(0.476,0.515]	chr12	520157	4	SS3_PROX	SS3_PROX:SS5_PROX:INTRON	DIABLO	ENSG00000184047.20	ENST00000443649.9:ENST00000650715.1:ENST00000464942.7:ENST00000353548.11:ENST00000644227.1:ENST00000644509.1:ENST00000342392.3:ENST00000645569.1:ENST00000267169.11:ENST00000489781.3:ENST00000540535.6:ENST00000642640.1:ENST00000439489.6:ENST00000541273.6:ENST00000474004.6:ENST00000541656.6:ENST00000446652.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	38	2	1.91817	2.2749249999999996	2.63168	0.0459211	0.0237106	0.164984	0.118716
chr4	152497108	152497208	2274700	0	-	0.48	(0.476,0.515]	chr4	221124	73	INTRON	INTRON	FBXW7	ENSG00000109670.16	ENST00000281708.10:ENST00000603548.6:ENST00000604872.6:ENST00000647166.1:ENST00000643834.1:ENST00000642901.1	protein_coding	protein_coding	protein_coding	protein_coding	3	38	2	1.91817	2.2749249999999996	2.63168	0.0459211	0.0237106	0.164984	0.118716
chr5	71464714	71464812	2383665	0	+	0.5	(0.476,0.515]	chr5	229869	2	INTRON	INTRON	BDP1	ENSG00000145734.20	ENST00000358731.9:ENST00000508917.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	38	2	1.91817	2.2749249999999996	2.63168	0.0459211	0.0237106	0.164984	0.118716
chr9	37235707	37235807	4118814	0	+	0.51	(0.476,0.515]	chr9	375389	488	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000461038.5:ENST00000488607.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	38	2	1.91817	2.2749249999999996	2.63168	0.0459211	0.0237106	0.164984	0.118716
chr22	20121378	20121474	7478629	0	+	0.510417	(0.476,0.515]	chr22	762785	19	INTRON	INTRON	RANBP1	ENSG00000099901.17	ENST00000435265.5:ENST00000432879.5:ENST00000430524.6:ENST00000402752.5:ENST00000488484.1:ENST00000331821.7:ENST00000411892.5:ENST00000416427.5:ENST00000421656.5:ENST00000423859.5:ENST00000418705.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	118	2	1.75116	2.2748600000000003	2.79856	0.00687667	7.60949e-4	0.0749442	0.0252625
chr17	20870279	20870378	6576081	0	+	0.565657	(0.515,0.57]	chr17	639372	12	INTRON	INTRON	CCDC144NL-AS1	ENSG00000233098.10	ENST00000577537.5:ENST00000692759.1:ENST00000443508.8:ENST00000692309.1:ENST00000439794.6:ENST00000417232.6:ENST00000583962.2:ENST00000582324.5:ENST00000577860.5	lncRNA	lncRNA	lncRNA	lncRNA	11	110	2	1.53025	2.274785	3.01932	0.0216707	4.42021e-5	0.11491	0.0053901
chr4	2912997	2913096	1915739	0	+	0.484848	(0.476,0.515]	chr4	192335	32	INTRON	INTRON	ADD1	ENSG00000087274.19	ENST00000683351.1:ENST00000398125.5:ENST00000264758.11:ENST00000513328.6:ENST00000503455.6:ENST00000355842.7:ENST00000651918.1:ENST00000398129.5:ENST00000398123.6:ENST00000514940.5:ENST00000541051.5:ENST00000513762.2:ENST00000536424.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	11	118	2	1.77513	2.274665	2.7742	0.00617221	8.54322e-4	0.0713211	0.0267428
chr1	225984201	225984301	646302	0	-	0.3	(0.28,0.32]	chr1	76574	16	UTR3	UTR3:EXON_MRNA	SDE2	ENSG00000143751.10	ENST00000272091.8	protein_coding	protein_coding	protein_coding	protein_coding	21	301	2	1.42521	2.274645	3.12408	0.0139844	3.70463e-5	0.102474	0.00517978
chr9	135933915	135934015	4372281	0	-	0.35	(0.32,0.35]	chr9	402501	4	SS3_PROX	SS3_PROX:INTRON	UBAC1	ENSG00000130560.9	ENST00000371756.4:ENST00000489050.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	17	240	2	2.14612	2.2746399999999998	2.40316	9.09979e-4	5.64362e-4	0.027712	0.021937
chr2	172583285	172583384	920179	0	+	0.414141	(0.408,0.44]	chr2	101374	121	INTRON	INTRON	PDK1	ENSG00000152256.14	ENST00000392571.6:ENST00000410055.5:ENST00000282077.8:ENST00000466437.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	19	206	2	2.09187	2.274595	2.45732	9.43743e-4	3.57314e-4	0.028105	0.0169202
chr1	213203444	213203543	312232	0	+	0.191919	[0,0.28]	chr1	35957	266	INTRON	INTRON	RPS6KC1	ENSG00000136643.12	ENST00000615329.4:ENST00000543354.5:ENST00000614059.4:ENST00000543470.5:ENST00000366960.8:ENST00000366959.4:ENST00000490299.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	55	2	1.95356	2.27452	2.59548	0.0463152	0.0346067	0.166231	0.136649
chr17	8469961	8470061	6555723	0	+	0.54	(0.515,0.57]	chr17	637370	19	INTRON	INTRON	NDEL1	ENSG00000166579.16	ENST00000581679.1	protein_coding	protein_coding	protein_coding	protein_coding	3	33	2	2.11313	2.2745100000000003	2.43589	0.0370871	0.0256725	0.139194	0.133676
chr3	185796468	185796568	1886063	0	-	0.52	(0.515,0.57]	chr3	188573	978	INTRON	INTRON	IGF2BP2	ENSG00000073792.16	ENST00000382199.7:ENST00000346192.7:ENST00000457616.6:ENST00000421047.3:ENST00000461957.5:ENST00000493302.5:ENST00000466476.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	33	2	2.11313	2.2745100000000003	2.43589	0.0370871	0.0256725	0.139194	0.133676
chr5	275811	275911	2312660	0	+	0.53	(0.515,0.57]	chr5	223711	4	SS3_PROX	SS3_PROX:INTRON	PDCD6	ENSG00000249915.9	ENST00000614778.4:ENST00000618970.4:ENST00000513582.5:ENST00000264933.9:ENST00000505221.5:ENST00000507528.5:ENST00000509581.5:ENST00000505526.1:ENST00000507473.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	33	2	2.11313	2.2745100000000003	2.43589	0.0370871	0.0256725	0.139194	0.133676
chr5	138028985	138029085	2730765	0	-	0.4	(0.378,0.408]	chr5	257016	74	INTRON	INTRON	FAM13B	ENSG00000031003.11	ENST00000689681.1:ENST00000033079.7:ENST00000425075.6:ENST00000420893.6:ENST00000514310.5:ENST00000502471.5:ENST00000509596.5:ENST00000508403.5:ENST00000505961.1:ENST00000510804.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	55	2	1.76032	2.274495	2.78867	0.0721577	0.00226991	0.187433	0.0437013
chr22	25494311	25494411	7489603	0	+	0.47	(0.44,0.476]	chr22	764216	328	INTRON	INTRON	CRYBB2P1	ENSG00000100058.13	ENST00000686640.1:ENST00000509460.3:ENST00000354451.6	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	4	46	2	1.87325	2.2744850000000003	2.67572	0.0265709	0.0212064	0.134088	0.113017
chr16	67803829	67803928	6505656	0	-	0.353535	(0.35,0.378]	chr16	629654	314	INTRON	INTRON	RANBP10	ENSG00000141084.12	ENST00000317506.8:ENST00000448631.6:ENST00000602506.5:ENST00000602677.5:ENST00000602525.5:ENST00000602638.5:ENST00000602815.5:ENST00000602887.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	69	2	1.56287	2.27447	2.98607	0.0697648	9.86191e-4	0.184298	0.0288537
chr3	152352512	152352611	1535826	0	+	0.333333	(0.32,0.35]	chr3	160003	169	INTRON	INTRON	MBNL1	ENSG00000152601.18	ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000495875.6:ENST00000324210.10:ENST00000493459.5:ENST00000459747.1:ENST00000460591.5:ENST00000545754.5:ENST00000357472.7:ENST00000324196.9:ENST00000498502.5:ENST00000463374.5:ENST00000485910.5:ENST00000465907.6:ENST00000492948.5:ENST00000485509.5:ENST00000464596.5	protein_coding	protein_coding	protein_coding	protein_coding	10	142	2	2.00192	2.274405	2.54689	0.00848699	5.04008e-4	0.0778788	0.0202328
chr8	25457501	25457585	3926343	0	-	0.416667	(0.408,0.44]	chr8	359467	2	EXON_LNCRNA	EXON_LNCRNA:INTRON	KCTD9	ENSG00000104756.16	ENST00000221200.9:ENST00000519665.5:ENST00000523140.5:ENST00000522493.5:ENST00000518067.5:ENST00000518997.5:ENST00000521458.5:ENST00000524217.1:ENST00000517914.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	59	2	1.54273	2.27434	3.00595	0.0337312	0.00781452	0.146709	0.0759016
chr7	133549900	133550000	3421145	0	+	0.26	[0,0.28]	chr7	319376	659	INTRON	INTRON	EXOC4	ENSG00000131558.15	ENST00000486013.5:ENST00000253861.5:ENST00000486409.6:ENST00000479839.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	56	2	1.85666	2.274265	2.69187	0.0660997	0.0221271	0.181924	0.123903
chr1	205741100	205741199	623799	0	-	0.565657	(0.515,0.57]	chr1	74198	99	INTRON	INTRON	NUCKS1	ENSG00000069275.13	ENST00000367142.5	protein_coding	protein_coding	protein_coding	protein_coding	3	33	2	1.86007	2.2742	2.68833	0.0526611	0.0184931	0.178401	0.108861
chr7	102183238	102183338	3370038	0	+	0.55	(0.515,0.57]	chr7	315292	42	INTRON	INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000560541.5:ENST00000558836.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	33	2	1.86007	2.2742	2.68833	0.0526611	0.0184931	0.178401	0.108861
chrX	134780525	134780625	7893329	0	-	0.43	(0.408,0.44]	chrX	803518	79	INTRON	INTRON	PABIR2	ENSG00000156504.17	ENST00000343004.10:ENST00000370790.5:ENST00000298090.10:ENST00000478384.5:ENST00000486347.5:ENST00000465128.3:ENST00000493333.5:ENST00000611027.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	97	2	2.00973	2.27417	2.53861	0.0069268	0.00202413	0.0718189	0.0416117
chr2	47894208	47894308	1116001	0	-	0.36	(0.35,0.378]	chr2	119694	56	INTRON	INTRON	FBXO11	ENSG00000138081.22	ENST00000684712.1:ENST00000682451.1:ENST00000403359.8:ENST00000683894.1:ENST00000681999.1:ENST00000682975.1:ENST00000684085.1:ENST00000492225.5:ENST00000424163.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	68	2	2.02424	2.274095	2.52395	0.0164934	0.00824736	0.110301	0.0773378
chr16	21462109	21462209	6460959	0	-	0.41	(0.408,0.44]	chr16	623298	15	INTRON	INTRON	SMG1P3	ENSG00000180747.15	ENST00000520823.6:ENST00000522480.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	7	80	2	1.35739	2.27402	3.19065	0.063317	3.2984e-4	0.177047	0.0161352
chr7	1156928	1157022	3461903	0	-	0.574468	(0.57,1]	chr7	323622	10	INTRON	INTRON	ZFAND2A	ENSG00000178381.12	ENST00000401903.5:ENST00000397083.6:ENST00000574135.2:ENST00000316495.8	protein_coding	protein_coding	protein_coding	protein_coding	3	21	2	2.02391	2.27398	2.52405	0.0339274	0.0263139	0.134508	0.133676
chr1	150829980	150830060	552505	0	-	0.4	(0.378,0.408]	chr1	64962	1	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	ARNT	ENSG00000143437.21	ENST00000358595.10:ENST00000471844.6:ENST00000354396.6:ENST00000515192.5:ENST00000505755.5:ENST00000478972.2:ENST00000512296.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	40	2	2.23831	2.2739599999999998	2.30961	0.055088	0.0179575	0.165463	0.114265
chr10	21983119	21983219	4578477	0	-	0.37	(0.35,0.378]	chr10	421947	536	INTRON	INTRON	DNAJC1	ENSG00000136770.11	ENST00000376980.8:ENST00000476103.3:ENST00000447548.5:ENST00000376946.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	31	2	2.24535	2.2739200000000004	2.30249	0.0647516	0.0519726	0.179192	0.176696
chr11	67256324	67256422	4813850	0	+	0.357143	(0.35,0.378]	chr11	448231	14	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	KDM2A	ENSG00000173120.15	ENST00000529006.7:ENST00000398645.6:ENST00000526258.5:ENST00000531696.5:ENST00000530342.2:ENST00000524657.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	31	2	2.24535	2.2739200000000004	2.30249	0.0647516	0.0519726	0.179192	0.176696
chr16	70346564	70346655	6510820	0	-	0.351648	(0.35,0.378]	chr16	630646	5	EXON_MRNA	EXON_MRNA:EXON_LNCRNA	DDX19A-DT	ENSG00000261777.6	ENST00000666089.1:ENST00000562077.5:ENST00000570278.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	2	31	2	2.24535	2.2739200000000004	2.30249	0.0647516	0.0519726	0.179192	0.176696
chr15	28193639	28193737	6122721	0	-	0.357143	(0.35,0.378]	chr15	583149	11	INTRON	INTRON	HERC2	ENSG00000128731.18	ENST00000261609.13:ENST00000567869.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	50	2	1.82281	2.2738899999999997	2.72497	0.0316938	0.0198266	0.144635	0.109608
chr20	63902985	63903084	7301037	0	+	0.484848	(0.476,0.515]	chr20	743135	73	INTRON	INTRON	DNAJC5	ENSG00000101152.11	ENST00000360864.9:ENST00000470551.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	53	2	1.78315	2.2738750000000003	2.7646	0.0215899	0.0162075	0.123836	0.101453
chr5	138512183	138512263	2732350	0	-	0.1125	[0,0.28]	chr5	257381	2	INTRON	INTRON	ETF1	ENSG00000120705.13	ENST00000360541.10:ENST00000499810.6:ENST00000503014.5:ENST00000506345.5:ENST00000512198.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	144	2	2.13061	2.273855	2.4171	0.0106411	0.00241762	0.0861859	0.0454275
chr1	45686473	45686536	440589	0	-	0.587302	(0.57,1]	chr1	53370	2	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	GPBP1L1	ENSG00000159592.11	ENST00000290795.7:ENST00000355105.8:ENST00000488278.5:ENST00000480941.1:ENST00000480083.5:ENST00000493083.5:ENST00000460859.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	56	2	1.9482	2.27379	2.59938	0.00675802	4.6166e-4	0.0711802	0.0194611
chr5	146482094	146482193	2515866	0	+	0.181818	[0,0.28]	chr5	240359	10	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	TCERG1	ENSG00000113649.13	ENST00000296702.9:ENST00000679501.2:ENST00000394421.7:ENST00000549332.1:ENST00000515203.5:ENST00000506524.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	75	2	2.02265	2.27377	2.52489	0.0449017	0.0084136	0.149888	0.082518
chr7	24848768	24848868	3504495	0	-	0.4	(0.378,0.408]	chr7	327048	3	SS5_PROX	SS5_PROX:INTRON	OSBPL3	ENSG00000070882.13	ENST00000313367.7:ENST00000409863.5:ENST00000396431.5:ENST00000409452.5:ENST00000409759.5:ENST00000409555.5:ENST00000396429.5:ENST00000409069.5:ENST00000461835.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	40	2	1.76032	2.273685	2.78705	0.0721577	0.0135539	0.187433	0.101363
chr9	131465676	131465775	4217698	0	+	0.383838	(0.378,0.408]	chr9	386784	2	INTRON	INTRON	PRRC2B	ENSG00000288701.1	ENST00000684596.1:ENST00000683519.1:ENST00000682501.1:ENST00000684736.1	protein_coding	protein_coding	protein_coding	protein_coding	3	40	2	1.76032	2.273685	2.78705	0.0721577	0.0135539	0.187433	0.101363
chrX	154788176	154788274	7915430	0	-	0.306122	(0.28,0.32]	chrX	806147	14	INTRON	INTRON	MPP1	ENSG00000130830.15	ENST00000369534.8:ENST00000413259.7:ENST00000439370.5:ENST00000393531.5:ENST00000453245.5:ENST00000494170.1:ENST00000462825.5:ENST00000393529.5:ENST00000475943.5:ENST00000428488.1:ENST00000488754.5:ENST00000417435.5:ENST00000488694.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	23	269	2	1.538	2.273615	3.00923	0.00658463	2.17523e-4	0.0737338	0.0135094
chr6	17657681	17657780	3065710	0	-	0.292929	(0.28,0.32]	chr6	284824	54	INTRON	INTRON	NUP153	ENSG00000124789.12	ENST00000613258.4:ENST00000537253.5:ENST00000262077.3	protein_coding	protein_coding	protein_coding	protein_coding	16	245	2	2.0431	2.2736099999999997	2.50412	0.00452727	1.50789e-4	0.0595107	0.0106137
chr7	102365554	102365654	3371089	0	+	0.41	(0.408,0.44]	chr7	315425	2	SS3_PROX	SS3_PROX:INTRON	PRKRIP1:ENSG00000239969	ENSG00000128563.13:ENSG00000239969.6	ENST00000477886.5:ENST00000469763.5:ENST00000482549.5:ENST00000496391.5:ENST00000484974.5:ENST00000492837.1	protein_coding	protein_coding	protein_coding:transcribed_unprocessed_pseudogene	protein_coding:processed_transcript	7	86	2	2.12303	2.273535	2.42404	0.00586883	0.00413548	0.0690758	0.0566868
chr14	96540855	96540954	5810570	0	+	0.424242	(0.408,0.44]	chr14	550937	31	INTRON	INTRON	PAPOLA	ENSG00000090060.19	ENST00000216277.13:ENST00000553689.5:ENST00000392990.6:ENST00000555626.5:ENST00000554666.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	86	2	2.00842	2.2735149999999997	2.53861	0.0108512	0.00202413	0.0873034	0.0416117
chr22	21827038	21827137	7560980	0	-	0.343434	(0.32,0.35]	chr22	773388	188	INTRON	INTRON	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	3	45	2	1.83416	2.273425	2.71269	0.0631198	0.0181461	0.176946	0.114853
chr22	31619237	31619330	7578479	0	-	0.526882	(0.515,0.57]	chr22	775532	9	UTR3	UTR3:EXON_MRNA	PISD	ENSG00000241878.12	ENST00000460723.5:ENST00000439502.7:ENST00000382151.6:ENST00000437808.5:ENST00000266095.9:ENST00000473770.5:ENST00000397500.5:ENST00000435900.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	14	140	2	2.24738	2.27341	2.29944	9.49246e-4	4.5425e-4	0.0281755	0.0192381
chr2	182964741	182964808	1285275	0	-	0.358209	(0.35,0.378]	chr2	135345	2	CDS	CDS:EXON_MRNA	NCKAP1	ENSG00000061676.15	ENST00000361354.9:ENST00000360982.2:ENST00000495619.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	16	148	2	1.55072	2.27337	2.99602	0.00742327	0.00133795	0.0772518	0.0335491
chr4	82873919	82874014	2179924	0	-	0.305263	(0.28,0.32]	chr4	214367	15	INTRON	INTRON	SEC31A	ENSG00000138674.17	ENST00000395310.7:ENST00000513858.5:ENST00000348405.8:ENST00000448323.5:ENST00000311785.11:ENST00000509142.5:ENST00000443462.6:ENST00000500777.6:ENST00000505472.5:ENST00000355196.6:ENST00000508502.5:ENST00000505984.5:ENST00000508479.5:ENST00000436790.6:ENST00000503058.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	61	2	2.21798	2.273345	2.32871	0.0581621	0.00901091	0.167723	0.0851009
chr10	110134007	110134104	4519679	0	+	0.309278	(0.28,0.32]	chr10	416871	5	UTR3	UTR3:EXON_MRNA	ADD3	ENSG00000148700.15	ENST00000360162.7:ENST00000277900.12:ENST00000356080.9	protein_coding	protein_coding	protein_coding	protein_coding	5	79	2	2.25939	2.273265	2.28714	0.021772	0.00696126	0.11491	0.0754576
chr10	16438289	16438389	4397795	0	+	0.52	(0.515,0.57]	chr10	406031	4	INTRON	INTRON	PTER	ENSG00000165983.15	ENST00000423462.6:ENST00000378000.5:ENST00000535784.7	protein_coding	protein_coding	protein_coding	protein_coding	3	34	2	2.08547	2.273255	2.46104	0.032841	0.0289426	0.145164	0.1274
chr15	22497863	22497963	5974545	0	+	0.56	(0.515,0.57]	chr15	568077	18	INTRON	INTRON	HERC2P2	ENSG00000276550.5	ENST00000613386.4	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	3	34	2	2.08547	2.273255	2.46104	0.032841	0.0289426	0.145164	0.1274
chr16	70033207	70033300	6509387	0	-	0.516129	(0.515,0.57]	chr16	630339	9	INTRON	INTRON	PDXDC2P-NPIPB14P:PDXDC2P	ENSG00000196696.13:ENSG00000255185.6	ENST00000531894.5:ENST00000530079.5:ENST00000529089.1:ENST00000534700.6	lncRNA	lncRNA	lncRNA:transcribed_unprocessed_pseudogene	lncRNA:transcribed_unprocessed_pseudogene	3	34	2	2.08547	2.273255	2.46104	0.032841	0.0289426	0.145164	0.1274
chr5	72266770	72266869	2640264	0	-	0.555556	(0.515,0.57]	chr5	250954	88	INTRON	INTRON	MRPS27	ENSG00000113048.18	ENST00000694990.1:ENST00000694989.1:ENST00000522042.2:ENST00000694988.1:ENST00000261413.10:ENST00000513900.6:ENST00000695403.1:ENST00000523654.6:ENST00000694998.1:ENST00000694997.1:ENST00000695298.1:ENST00000694996.1:ENST00000694995.1:ENST00000519143.6:ENST00000694994.1:ENST00000695297.1:ENST00000695296.1:ENST00000694993.1:ENST00000694992.1:ENST00000694991.1:ENST00000694999.1:ENST00000457646.9:ENST00000695404.1:ENST00000508863.6:ENST00000515404.5:ENST00000522404.5:ENST00000695000.1:ENST00000695001.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	34	2	2.08547	2.273255	2.46104	0.032841	0.0289426	0.145164	0.1274
chr16	7939858	7939958	6439906	0	-	0.44	(0.408,0.44]	chr16	620339	451	INTRON	INTRON	ENSG00000260289	ENSG00000260289.2	ENST00000670665.1:ENST00000654046.1:ENST00000567103.2	lncRNA	lncRNA	lncRNA	lncRNA	3	39	2	1.88062	2.273205	2.66579	0.0534548	0.019342	0.162935	0.119831
chr19	54447421	54447502	7211764	0	-	0.432099	(0.408,0.44]	chr19	732164	3	INTRON	INTRON	LENG8-AS1	ENSG00000226696.7	ENST00000429922.5:ENST00000416022.1	lncRNA	lncRNA	lncRNA	lncRNA	3	39	2	1.88062	2.273205	2.66579	0.0534548	0.019342	0.162935	0.119831
chr3	49009723	49009823	1422195	0	+	0.43	(0.408,0.44]	chr3	149598	3	INTRON	INTRON	WDR6	ENSG00000178252.19	ENST00000395474.7:ENST00000610967.4:ENST00000429900.6:ENST00000488572.6:ENST00000489684.2:ENST00000462064.5:ENST00000608424.6:ENST00000438660.5:ENST00000473238.6:ENST00000415265.6:ENST00000452875.5:ENST00000471162.5:ENST00000420783.7:ENST00000627177.1:ENST00000448293.5:ENST00000472878.5:ENST00000419837.1:ENST00000461687.1:ENST00000489427.1:ENST00000491365.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	39	2	1.88062	2.273205	2.66579	0.0534548	0.019342	0.162935	0.119831
chr5	176924247	176924347	2776100	0	-	0.43	(0.408,0.44]	chr5	261526	46	INTRON	INTRON	UIMC1	ENSG00000087206.17	ENST00000377227.8:ENST00000511320.6:ENST00000506128.5:ENST00000512031.5:ENST00000510698.2:ENST00000503273.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	39	2	1.88062	2.273205	2.66579	0.0534548	0.019342	0.162935	0.119831
chr14	21257362	21257461	5835046	0	-	0.333333	(0.32,0.35]	chr14	554465	24	INTRON	INTRON	HNRNPC	ENSG00000092199.19	ENST00000336053.10:ENST00000553300.6:ENST00000554969.5:ENST00000556142.5:ENST00000554455.5:ENST00000430246.6:ENST00000553753.5:ENST00000555309.5:ENST00000555914.5:ENST00000557442.5:ENST00000556628.5:ENST00000556513.5:ENST00000555883.5:ENST00000557201.5:ENST00000556897.5:ENST00000420743.6:ENST00000554539.5:ENST00000554383.5:ENST00000555215.5:ENST00000555137.5:ENST00000554891.5:ENST00000556226.5:ENST00000555176.5:ENST00000553614.5:ENST00000557336.1:ENST00000557768.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	19	264	2	1.93841	2.273195	2.60798	0.00335031	6.29574e-5	0.051415	0.00658818
chr7	23401744	23401844	3502974	0	-	0.51	(0.476,0.515]	chr7	326882	1	SS5_PROX	SS5_PROX:INTRON	IGF2BP3	ENSG00000136231.14	ENST00000258729.8:ENST00000421467.6:ENST00000468263.5:ENST00000479504.5:ENST00000466809.6:ENST00000491719.5:ENST00000465058.5:ENST00000469723.5:ENST00000474105.5:ENST00000476938.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	13	150	2	2.13145	2.27318	2.41491	0.00109337	0.00105334	0.0304174	0.0299229
chr10	73036134	73036234	4647229	0	-	0.42	(0.408,0.44]	chr10	427500	54	INTRON	INTRON	P4HA1	ENSG00000122884.13	ENST00000394890.7:ENST00000307116.6:ENST00000373008.6:ENST00000440381.5:ENST00000263556.3	protein_coding	protein_coding	protein_coding	protein_coding	9	104	2	2.06309	2.273175	2.48326	0.00324772	0.00294584	0.0508595	0.0497776
chr19	14488763	14488862	7144678	0	-	0.454545	(0.44,0.476]	chr19	721429	48	INTRON	INTRON	GIPC1	ENSG00000123159.16	ENST00000393028.5:ENST00000345425.6:ENST00000393033.9:ENST00000586027.5:ENST00000591349.5:ENST00000589497.5:ENST00000587210.1:ENST00000587934.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	39	2	1.96602	2.273175	2.58033	0.0426807	0.0247511	0.148082	0.131869
chr21	33458157	33458254	7440756	0	-	0.474227	(0.44,0.476]	chr21	759343	17	INTRON	INTRON	TMEM50B	ENSG00000142188.17	ENST00000420455.5:ENST00000542230.7:ENST00000441128.5:ENST00000442441.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	39	2	1.96602	2.273175	2.58033	0.0426807	0.0247511	0.148082	0.131869
chr8	140628831	140628930	4076499	0	-	0.525253	(0.515,0.57]	chr8	370289	16	INTRON	INTRON	AGO2	ENSG00000123908.12	ENST00000220592.10:ENST00000519980.5:ENST00000523609.5:ENST00000517293.5:ENST00000518019.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	51	2	1.98329	2.273175	2.56306	0.0247751	0.0105419	0.131869	0.0860389
chr9	19099943	19100042	4236574	0	-	0.464646	(0.44,0.476]	chr9	389435	28	INTRON	INTRON	HAUS6	ENSG00000147874.11	ENST00000380502.8	protein_coding	protein_coding	protein_coding	protein_coding	3	39	2	1.96602	2.273175	2.58033	0.0426807	0.0247511	0.148082	0.131869
chr16	54919869	54919969	6488441	0	-	0.28	[0,0.28]	chr16	627574	35	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	CRNDE	ENSG00000245694.11	ENST00000613942.2:ENST00000661493.1:ENST00000668556.1:ENST00000660344.1:ENST00000502066.7:ENST00000559598.7:ENST00000688921.1:ENST00000501177.9:ENST00000560029.5:ENST00000661312.1:ENST00000689582.1:ENST00000558031.7:ENST00000689375.1:ENST00000691307.1:ENST00000657142.1:ENST00000557792.2:ENST00000559432.6:ENST00000655114.1:ENST00000560912.6:ENST00000558952.2	lncRNA	lncRNA	lncRNA	lncRNA	6	110	2	1.91746	2.273165	2.62887	0.0323084	0.00205554	0.132921	0.0420839
chr1	52882065	52882165	105309	0	+	0.49	(0.476,0.515]	chr1	13773	4	SS5_PROX	SS5_PROX:INTRON	ZYG11A	ENSG00000203995.10	ENST00000371532.5:ENST00000612017.4:ENST00000371528.2	protein_coding	protein_coding	protein_coding	protein_coding	9	108	2	2.1318	2.273025	2.41425	0.00333541	0.00197914	0.0528877	0.0404068
chr22	23187611	23187711	7483274	0	+	0.41	(0.408,0.44]	chr22	763531	50	INTRON	INTRON	BCR	ENSG00000186716.21	ENST00000479188.5:ENST00000359540.7:ENST00000305877.13	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	97	2	1.82275	2.27299	2.72323	0.0123226	0.00114246	0.097243	0.0307966
chr1	50849235	50849335	451145	0	-	0.34	(0.32,0.35]	chr1	54261	472	INTRON	INTRON	FAF1	ENSG00000185104.21	ENST00000396153.7:ENST00000487898.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	33	2	2.23182	2.272935	2.31405	0.068598	0.0517107	0.184298	0.176696
chr16	84762297	84762392	6410545	0	+	0.336842	(0.32,0.35]	chr16	615322	17	INTRON	INTRON	USP10	ENSG00000103194.16	ENST00000540269.6:ENST00000219473.12:ENST00000570191.5:ENST00000563048.5:ENST00000569038.5:ENST00000570053.1:ENST00000563433.1:ENST00000566378.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	33	2	2.23182	2.272935	2.31405	0.068598	0.0517107	0.184298	0.176696
chr2	33130501	33130601	737297	0	+	0.35	(0.32,0.35]	chr2	84888	194	INTRON	INTRON	LTBP1	ENSG00000049323.16	ENST00000404816.7	protein_coding	protein_coding	protein_coding	protein_coding	2	33	2	2.23182	2.272935	2.31405	0.068598	0.0517107	0.184298	0.176696
chr20	3015248	3015348	7223991	0	+	0.34	(0.32,0.35]	chr20	734008	75	INTRON	INTRON	PTPRA	ENSG00000132670.21	ENST00000399903.7:ENST00000216877.10:ENST00000318266.9:ENST00000356147.3	protein_coding	protein_coding	protein_coding	protein_coding	2	33	2	2.23182	2.272935	2.31405	0.068598	0.0517107	0.184298	0.176696
chr20	50752853	50752952	7286890	0	+	0.323232	(0.32,0.35]	chr20	741306	25	UTR3	UTR3:EXON_MRNA:INTRON	PARD6B	ENSG00000124171.9	ENST00000371610.7:ENST00000396039.1	protein_coding	protein_coding	protein_coding	protein_coding	2	33	2	2.23182	2.272935	2.31405	0.068598	0.0517107	0.184298	0.176696
chr4	80039920	80040019	2170217	0	-	0.323232	(0.32,0.35]	chr4	213911	35	INTRON	INTRON	ANTXR2	ENSG00000163297.18	ENST00000403729.7:ENST00000449651.5:ENST00000679571.1:ENST00000681710.1:ENST00000680913.1:ENST00000681115.1:ENST00000404191.5:ENST00000346652.10:ENST00000307333.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	33	2	2.23182	2.272935	2.31405	0.068598	0.0517107	0.184298	0.176696
chr5	32401463	32401558	2598888	0	-	0.336842	(0.32,0.35]	chr5	246930	9	INTRON	INTRON	ZFR	ENSG00000056097.16	ENST00000265069.13	protein_coding	protein_coding	protein_coding	protein_coding	2	33	2	2.23182	2.272935	2.31405	0.068598	0.0517107	0.184298	0.176696
chr7	110806608	110806708	3616543	0	-	0.33	(0.32,0.35]	chr7	337078	809	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000487733.5:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	33	2	2.23182	2.272935	2.31405	0.068598	0.0517107	0.184298	0.176696
chr10	60794364	60794462	4435934	0	+	0.285714	(0.28,0.32]	chr10	409203	5	UTR3	UTR3:EXON_MRNA	CDK1	ENSG00000170312.17	ENST00000316629.8:ENST00000395284.8:ENST00000448257.6:ENST00000373809.2	protein_coding	protein_coding	protein_coding	protein_coding	28	396	2	1.90223	2.27277	2.64331	0.00104851	1.7262e-4	0.0298379	0.0120751
chr16	21516328	21516428	6461520	0	-	0.58	(0.57,1]	chr16	623383	98	INTRON	INTRON	SMG1P3	ENSG00000180747.15	ENST00000522841.6:ENST00000437413.2:ENST00000435197.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	9	49	2	1.81052	2.272755	2.73499	0.00601156	0.00237434	0.0700813	0.0438057
chr17	78199631	78199729	6682073	0	+	0.663265	(0.57,1]	chr17	652703	22	INTRON	INTRON	AFMID	ENSG00000183077.16	ENST00000591256.5:ENST00000409257.10:ENST00000327898.9:ENST00000591952.5:ENST00000588800.5:ENST00000588199.5:ENST00000589107.5:ENST00000592988.5:ENST00000586542.5:ENST00000591538.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	49	2	1.81052	2.272755	2.73499	0.00601156	0.00237434	0.0700813	0.0438057
chr17	62038198	62038298	6810609	0	-	0.51	(0.476,0.515]	chr17	672946	22	INTRON	INTRON	MED13	ENSG00000108510.10	ENST00000397786.7	protein_coding	protein_coding	protein_coding	protein_coding	14	121	2	1.42883	2.27265	3.11647	0.014878	6.41912e-4	0.107116	0.0231685
chr3	10147621	10147718	1363173	0	+	0.381443	(0.378,0.408]	chr3	143677	6	INTRON	INTRON	VHL	ENSG00000134086.9	ENST00000696153.1:ENST00000256474.3:ENST00000696142.1:ENST00000345392.2:ENST00000696143.1:ENST00000477538.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	57	2	2.0102	2.272615	2.53503	0.0319942	0.00940766	0.13174	0.0861183
chr3	33665013	33665112	1653471	0	-	0.494949	(0.476,0.515]	chr3	169658	11	INTRON	INTRON	CLASP2	ENSG00000163539.18	ENST00000399362.8:ENST00000682230.1:ENST00000468888.6:ENST00000359576.9	protein_coding	protein_coding	protein_coding	protein_coding	4	52	2	1.86492	2.272575	2.68023	0.0550347	0.00353671	0.165463	0.0546236
chr4	902542	902642	2093988	0	-	0.48	(0.476,0.515]	chr4	206956	40	INTRON	INTRON	GAK	ENSG00000178950.18	ENST00000314167.9:ENST00000511163.5:ENST00000505819.5:ENST00000507580.5:ENST00000502656.5:ENST00000507991.1:ENST00000512325.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	52	2	1.86492	2.272575	2.68023	0.0550347	0.00353671	0.165463	0.0546236
chr19	5718412	5718511	7124700	0	-	0.424242	(0.408,0.44]	chr19	717176	4	INTRON	INTRON	LONP1	ENSG00000196365.12	ENST00000360614.8:ENST00000587552.5:ENST00000540670.6:ENST00000593119.5:ENST00000585374.5:ENST00000590558.5:ENST00000590729.5:ENST00000587365.1:ENST00000586617.1:ENST00000590728.1:ENST00000590511.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	98	2	2.1269	2.27243	2.41796	0.00691204	0.0015483	0.0718189	0.0363194
chr11	3876538	3876638	4723672	0	+	0.48	(0.476,0.515]	chr11	437130	79	INTRON	INTRON	STIM1	ENSG00000167323.12	ENST00000525403.5:ENST00000526596.2:ENST00000300737.8:ENST00000616714.4:ENST00000527651.5:ENST00000532610.5:ENST00000532919.5:ENST00000530554.5	protein_coding	protein_coding	protein_coding	protein_coding	6	74	2	2.21025	2.272425	2.3346	0.00913757	0.00494807	0.0812335	0.0646039
chr20	17949731	17949831	7320365	0	-	0.48	(0.476,0.515]	chr20	745286	2	SS5_PROX	SS5_PROX:INTRON	SNX5	ENSG00000089006.17	ENST00000377768.7:ENST00000490175.5:ENST00000483485.5:ENST00000377759.9:ENST00000476648.5:ENST00000463050.5:ENST00000431277.5:ENST00000419004.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	74	2	2.21025	2.272425	2.3346	0.00913757	0.00494807	0.0812335	0.0646039
chr1	22059490	22059588	42269	0	+	0.326531	(0.32,0.35]	chr1	5073	4	EXON_LNCRNA	EXON_LNCRNA:INTRON	ENSG00000289694:CDC42:CDC42-IT1	ENSG00000289694.1:ENSG00000070831.18:ENSG00000230068.2	ENST00000695855.1:ENST00000695856.1:ENST00000344548.8:ENST00000400259.5:ENST00000667384.2:ENST00000411827.2:ENST00000695858.1:ENST00000695857.1:ENST00000315554.14:ENST00000695859.1:ENST00000498236.1:ENST00000656825.1:ENST00000651171.1:ENST00000652582.1:ENST00000695860.1:ENST00000695796.1:ENST00000695797.1:ENST00000662562.2:ENST00000695798.1:ENST00000431803.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:nonsense_mediated_decay:lncRNA	6	83	2	2.12121	2.2723649999999997	2.42352	0.0122807	0.00650424	0.091087	0.0735144
chr3	9992075	9992173	1362021	0	+	0.377551	(0.35,0.378]	chr3	143392	30	INTRON	INTRON	EMC3-AS1	ENSG00000180385.9	ENST00000692142.1:ENST00000366264.6:ENST00000693066.1:ENST00000326237.3:ENST00000440568.1:ENST00000438698.1:ENST00000424904.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	9	102	2	1.33473	2.2723500000000003	3.20997	0.0484067	3.32797e-4	0.153635	0.0162254
chr12	62405963	62406062	5151040	0	+	0.292929	(0.28,0.32]	chr12	487439	17	UTR3	UTR3:EXON_MRNA:INTRON	USP15	ENSG00000135655.16	ENST00000353364.7:ENST00000280377.10:ENST00000549415.1	protein_coding	protein_coding	protein_coding	protein_coding	10	152	2	2.11574	2.272335	2.42893	0.00295296	0.00287039	0.0498928	0.0474836
chr1	246562564	246562663	680951	0	-	0.393939	(0.378,0.408]	chr1	79822	47	INTRON	INTRON	TFB2M	ENSG00000162851.8	ENST00000366514.5	protein_coding	protein_coding	protein_coding	protein_coding	4	54	2	2.23831	2.2722949999999997	2.30628	0.0179575	0.0163339	0.114265	0.101571
chr13	79397504	79397604	5626322	0	-	0.48	(0.476,0.515]	chr13	536667	182	INTRON	INTRON	RBM26	ENSG00000139746.16	ENST00000438737.3:ENST00000438724.5:ENST00000622611.4:ENST00000267229.11:ENST00000472143.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	75	2	2.16306	2.272175	2.38129	0.00973468	0.00474233	0.0877284	0.0600445
chr7	121111164	121111264	3394870	0	+	0.43	(0.408,0.44]	chr7	317723	107	INTRON	INTRON	CPED1	ENSG00000106034.18	ENST00000310396.10:ENST00000428526.5:ENST00000450913.6:ENST00000423795.5:ENST00000443817.1	protein_coding	protein_coding	protein_coding	protein_coding	5	53	2	1.43792	2.272165	3.10641	0.062843	0.00555646	0.196433	0.0648867
chr15	30631368	30631463	5992317	0	+	0.484211	(0.476,0.515]	chr15	569695	2	INTRON	INTRON	ENSG00000284906:ARHGAP11B	ENSG00000284906.3:ENSG00000285077.3	ENST00000564902.5:ENST00000646747.1:ENST00000689358.1:ENST00000428041.4:ENST00000693711.1:ENST00000685924.1:ENST00000563110.6:ENST00000566362.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	52	2	2.13304	2.272125	2.41121	0.024866	0.0110342	0.132101	0.0873897
chr16	16506816	16506916	6310930	0	+	0.42	(0.408,0.44]	chr16	604098	68	INTRON	INTRON	ENSG00000260126	ENSG00000260126.2	ENST00000567465.2	lncRNA	lncRNA	lncRNA	lncRNA	6	77	2	2.20979	2.27205	2.33431	0.0129219	0.00496289	0.0990564	0.0615009
chr1	54373696	54373795	463434	0	-	0.474747	(0.44,0.476]	chr1	55784	170	INTRON	INTRON	SSBP3	ENSG00000157216.16	ENST00000610401.5:ENST00000357475.9:ENST00000371319.8:ENST00000417664.7:ENST00000533946.6:ENST00000371320.8:ENST00000525990.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	10	111	2	1.79674	2.272035	2.74733	0.00717907	9.96884e-4	0.0756118	0.0288906
chr1	35102411	35102510	68143	0	+	0.30303	(0.28,0.32]	chr1	8682	45	INTRON	INTRON	ZMYM1	ENSG00000197056.11	ENST00000650449.1:ENST00000611874.4:ENST00000417119.5:ENST00000359858.9:ENST00000488455.5:ENST00000373330.1:ENST00000373329.5:ENST00000475654.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	59	2	2.02902	2.27195	2.51488	0.0380957	0.0174423	0.141678	0.11269
chr6	4023864	4023964	2789723	0	+	0.45	(0.44,0.476]	chr6	263481	20	INTRON	INTRON	PRPF4B	ENSG00000112739.17	ENST00000480058.5:ENST00000337659.11	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	103	2	2.1762	2.271935	2.36767	0.0092251	0.00141303	0.0855292	0.0340865
chr7	127936524	127936624	3405265	0	+	0.42	(0.408,0.44]	chr7	318173	68	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000486037.1:ENST00000484767.5:ENST00000492840.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	109	2	1.98453	2.271775	2.55902	0.00766144	7.64731e-4	0.075364	0.0254338
chr6	17664442	17664540	3065780	0	-	0.336735	(0.32,0.35]	chr6	284834	20	INTRON	INTRON	NUP153	ENSG00000124789.12	ENST00000613258.4:ENST00000537253.5:ENST00000262077.3	protein_coding	protein_coding	protein_coding	protein_coding	9	122	2	1.72833	2.271765	2.8152	0.0170188	6.37027e-4	0.104099	0.0228285
chr1	163331390	163331489	239628	0	+	0.292929	(0.28,0.32]	chr1	28870	21	INTRON	INTRON	NUF2	ENSG00000143228.13	ENST00000534289.5:ENST00000450453.6:ENST00000524800.5:ENST00000367900.7:ENST00000442820.5:ENST00000271452.8:ENST00000490881.5:ENST00000497990.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	12	141	2	1.46234	2.271755	3.08117	0.0192738	0.001245	0.119831	0.0322969
chr2	61510852	61510929	1130943	0	-	0.597403	(0.57,1]	chr2	121598	4	EXON_LNCRNA	EXON_LNCRNA:INTRON	XPO1	ENSG00000082898.19	ENST00000677110.1:ENST00000676553.1:ENST00000677556.1:ENST00000677814.1:ENST00000676771.1:ENST00000677803.1:ENST00000677239.1:ENST00000678790.1:ENST00000677928.1:ENST00000678182.1:ENST00000677150.1:ENST00000678172.1:ENST00000678360.1:ENST00000678081.1:ENST00000676889.1:ENST00000676783.1:ENST00000679035.1:ENST00000677422.1:ENST00000677417.1:ENST00000677813.1:ENST00000676999.1:ENST00000676667.1:ENST00000678263.1:ENST00000678877.1:ENST00000677933.1:ENST00000680228.1:ENST00000677289.1:ENST00000677190.1:ENST00000401558.7:ENST00000428210.5:ENST00000677290.1:ENST00000677850.1:ENST00000451765.6:ENST00000676789.1:ENST00000678741.1:ENST00000404992.6:ENST00000406957.5:ENST00000443240.5:ENST00000476585.5:ENST00000468259.1:ENST00000420673.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	29	2	1.87901	2.2716950000000002	2.66438	0.0171563	0.0152867	0.108569	0.104099
chr12	93387053	93387152	5189032	0	+	0.515152	(0.476,0.515]	chr12	490794	15	INTRON	INTRON	NUDT4	ENSG00000173598.14	ENST00000337179.9:ENST00000415493.7:ENST00000549992.5:ENST00000550056.5:ENST00000547014.5:ENST00000548662.5:ENST00000546925.1	protein_coding	protein_coding	protein_coding	protein_coding	6	71	2	1.73688	2.271695	2.80651	0.0252731	0.00250121	0.133676	0.0446195
chr11	61304535	61304633	4956191	0	-	0.561224	(0.515,0.57]	chr11	465677	1	INTRON	INTRON	DDB1	ENSG00000167986.15	ENST00000301764.12:ENST00000680367.1:ENST00000681803.1:ENST00000680717.1:ENST00000679712.1:ENST00000680357.1:ENST00000680075.1:ENST00000679588.1:ENST00000680602.1:ENST00000680881.1:ENST00000681188.1:ENST00000535283.6:ENST00000680452.1:ENST00000681935.1:ENST00000680250.1:ENST00000680959.1:ENST00000540166.5:ENST00000679855.1:ENST00000539332.2:ENST00000681368.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	40	2	1.63184	2.27162	2.9114	0.0545832	0.00826019	0.165292	0.0813266
chr3	167707589	167707689	1853775	0	-	0.55	(0.515,0.57]	chr3	186313	23	INTRON	INTRON	PDCD10	ENSG00000114209.15	ENST00000392750.7:ENST00000473645.6:ENST00000497056.6:ENST00000492396.5:ENST00000461494.5:ENST00000470131.5:ENST00000475915.6:ENST00000487947.6:ENST00000471885.5:ENST00000479121.5:ENST00000462725.6:ENST00000492139.5:ENST00000483451.5:ENST00000494502.6:ENST00000464360.5:ENST00000481136.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	40	2	1.63184	2.27162	2.9114	0.0545832	0.00826019	0.165292	0.0813266
chr19	16843053	16843151	7027505	0	+	0.418367	(0.408,0.44]	chr19	699476	7	INTRON	INTRON	SIN3B	ENSG00000127511.10	ENST00000248054.10:ENST00000379803.5:ENST00000596802.5:ENST00000596638.1	protein_coding	protein_coding	protein_coding	protein_coding	4	52	2	1.94273	2.271605	2.60048	0.0456237	0.00484324	0.149888	0.0640618
chr22	23202849	23202949	7483430	0	+	0.44	(0.408,0.44]	chr22	763541	31	INTRON	INTRON	BCR	ENSG00000186716.21	ENST00000479188.5:ENST00000359540.7:ENST00000305877.13:ENST00000463770.5:ENST00000487679.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	17	201	2	1.99436	2.2716000000000003	2.54884	0.00130127	2.36576e-4	0.0333932	0.0140962
chr8	60530152	60530252	3757932	0	+	0.52	(0.515,0.57]	chr8	349495	125	INTRON	INTRON	RAB2A	ENSG00000104388.15	ENST00000531289.5:ENST00000262646.12:ENST00000481569.1:ENST00000529579.5:ENST00000466595.5:ENST00000429861.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	53	2	2.00468	2.271565	2.53845	0.0166344	0.00632226	0.110511	0.0687526
chr22	21794750	21794849	7560654	0	-	0.464646	(0.44,0.476]	chr22	773370	56	INTRON	INTRON	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	16	191	2	1.99961	2.271555	2.5435	0.0036117	6.42831e-5	0.0533855	0.00664147
chr17	30121568	30121667	6587436	0	+	0.525253	(0.515,0.57]	chr17	640557	30	INTRON	INTRON	NSRP1	ENSG00000126653.18	ENST00000540900.7:ENST00000584423.5:ENST00000612959.4:ENST00000247026.10:ENST00000577289.6:ENST00000584154.5:ENST00000394826.8:ENST00000479218.6:ENST00000475652.5:ENST00000584317.5:ENST00000583301.5:ENST00000585881.5:ENST00000467446.6:ENST00000580103.6:ENST00000581048.5:ENST00000588614.1:ENST00000589608.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	93	2	1.79285	2.27154	2.75023	0.0141154	2.30309e-4	0.0959618	0.0133889
chr8	6748426	6748525	3695410	0	+	0.363636	(0.35,0.378]	chr8	342871	2	INTRON	INTRON	AGPAT5	ENSG00000155189.12	ENST00000285518.11:ENST00000523234.5:ENST00000518327.1:ENST00000530716.1:ENST00000533159.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	85	2	2.25522	2.2714600000000003	2.2877	0.0155765	0.00456563	0.109411	0.0595107
chr4	25832300	25832397	2120318	0	-	0.350515	(0.35,0.378]	chr4	209452	18	INTRON	INTRON	SEL1L3	ENSG00000091490.11	ENST00000264868.9:ENST00000399878.8:ENST00000502949.5	protein_coding	protein_coding	protein_coding	protein_coding	6	81	2	2.09331	2.27146	2.44961	0.0315717	0.0014359	0.13151	0.0347139
chr1	227253263	227253363	651067	0	-	0.42	(0.408,0.44]	chr1	77102	335	INTRON	INTRON	CDC42BPA	ENSG00000143776.20	ENST00000366766.8:ENST00000366769.7:ENST00000334218.9:ENST00000366767.7:ENST00000366764.8:ENST00000478573.6:ENST00000682551.1:ENST00000462553.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	71	2	1.96973	2.27134	2.57295	0.0108773	0.00640423	0.0923273	0.0694534
chr19	52663134	52663233	7206859	0	-	0.373737	(0.35,0.378]	chr19	731411	19	INTRON	INTRON	ZNF83:ENSG00000269825	ENSG00000167766.20:ENSG00000269825.2	ENST00000601257.5:ENST00000594682.6:ENST00000687234.1:ENST00000598536.5:ENST00000595171.5:ENST00000596440.5:ENST00000602232.5:ENST00000598322.2:ENST00000598190.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	42	2	1.81767	2.271325	2.72498	0.0640429	0.0168499	0.177882	0.11068
chr7	65931591	65931691	3323461	0	+	0.36	(0.35,0.378]	chr7	309012	577	INTRON	INTRON	VKORC1L1	ENSG00000196715.7	ENST00000360768.5:ENST00000648187.1:ENST00000648179.1:ENST00000434382.2	protein_coding	protein_coding	protein_coding	protein_coding	3	42	2	1.81767	2.271325	2.72498	0.0640429	0.0168499	0.177882	0.11068
chr11	96322684	96322784	5024163	0	-	0.31	(0.28,0.32]	chr11	473809	2288	INTRON	INTRON	MAML2	ENSG00000184384.14	ENST00000524717.6	protein_coding	protein_coding	protein_coding	protein_coding	6	97	2	2.18212	2.271305	2.36049	0.010265700000000001	0.00700135	0.089002	0.0718189
chr22	19343296	19343396	7553516	0	-	0.53	(0.515,0.57]	chr22	772184	114	INTRON	INTRON	HIRA	ENSG00000100084.14	ENST00000263208.5:ENST00000340170.8	protein_coding	protein_coding	protein_coding	protein_coding	8	84	2	2.16051	2.2712950000000003	2.38208	0.0046825	0.00191752	0.0631419	0.0395751
chr1	267704	267804	353271	0	-	0.46	(0.44,0.476]	chr1	40896	48	EXON_LNCRNA	EXON_LNCRNA:INTRON	ENSG00000228463	ENSG00000228463.10	ENST00000448958.2:ENST00000441866.2:ENST00000634344.2:ENST00000424587.7	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	10	121	2	2.15624	2.27129	2.38634	0.00245194	0.0018045	0.0446192	0.039301
chr2	53961459	53961559	1120483	0	-	0.43	(0.408,0.44]	chr2	120102	118	INTRON	INTRON	PSME4	ENSG00000068878.15	ENST00000404125.6:ENST00000389993.7:ENST00000481518.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	63	2	2.11447	2.271275	2.42808	0.0285207	0.00331055	0.12666	0.0527031
chr1	29116103	29116203	61008	0	+	0.45	(0.44,0.476]	chr1	7788	3	SS5_PROX	SS5_PROX:INTRON	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000373798.5:ENST00000343067.9:ENST00000349460.9:ENST00000490308.2:ENST00000460378.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	38	2	2.00609	2.271245	2.5364	0.0360127	0.0309324	0.152355	0.13151
chr19	1799155	1799254	7113312	0	-	0.474747	(0.44,0.476]	chr19	714742	5	UTR3	UTR3:EXON_MRNA:INTRON	ATP8B3	ENSG00000130270.16	ENST00000310127.10:ENST00000531925.5:ENST00000525591.5:ENST00000526092.6:ENST00000533107.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	38	2	2.00609	2.271245	2.5364	0.0360127	0.0309324	0.152355	0.13151
chr22	20734553	20734610	7558404	0	-	0.45614	(0.44,0.476]	chr22	773039	1	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	PI4KA	ENSG00000241973.11	ENST00000255882.11:ENST00000477245.5:ENST00000494113.1:ENST00000477368.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	38	2	2.00609	2.271245	2.5364	0.0360127	0.0309324	0.152355	0.13151
chr7	105329964	105330064	3603316	0	-	0.45	(0.44,0.476]	chr7	336161	230	INTRON	INTRON	SRPK2	ENSG00000135250.17	ENST00000393651.8:ENST00000482897.5:ENST00000460391.5:ENST00000462282.5:ENST00000465112.5:ENST00000482862.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	57	2	1.79873	2.2712250000000003	2.74372	0.0223888	0.0153007	0.116918	0.108569
chr5	57175447	57175542	2358069	0	+	0.336842	(0.32,0.35]	chr5	227559	1	UTR5	UTR5:EXON_MRNA	GPBP1	ENSG00000062194.16	ENST00000424459.7:ENST00000514387.6:ENST00000506184.7	protein_coding	protein_coding	protein_coding	protein_coding	11	153	2	2.15035	2.27115	2.39195	0.00745925	4.47385e-4	0.0748233	0.0191768
chr19	11020580	11020675	7016185	0	+	0.473684	(0.44,0.476]	chr19	697286	1	EXON_MRNA	EXON_MRNA:INTRON	SMARCA4	ENSG00000127616.20	ENST00000644737.1:ENST00000642726.1:ENST00000646484.1:ENST00000643549.1:ENST00000643296.1:ENST00000647230.1:ENST00000642628.1:ENST00000646510.1:ENST00000429416.8:ENST00000344626.10:ENST00000646693.2:ENST00000645460.1:ENST00000541122.6:ENST00000589677.5:ENST00000444061.8:ENST00000590574.6:ENST00000591545.6:ENST00000643995.1:ENST00000644327.1:ENST00000644065.1:ENST00000644963.1:ENST00000643208.1:ENST00000645061.1:ENST00000642350.1:ENST00000644290.1:ENST00000647268.1:ENST00000643857.1:ENST00000644267.1:ENST00000646183.1:ENST00000646746.1:ENST00000643534.1:ENST00000646513.1:ENST00000646593.1:ENST00000645648.1:ENST00000592604.6:ENST00000586122.5:ENST00000587988.5:ENST00000591595.5:ENST00000646236.1:ENST00000585799.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	39	2	2.20949	2.2711050000000004	2.33272	0.0672585	0.0129984	0.183051	0.0991656
chr20	35056914	35057013	7332544	0	-	0.464646	(0.44,0.476]	chr20	746955	15	INTRON	INTRON	TRPC4AP	ENSG00000100991.12	ENST00000252015.3:ENST00000451813.6	protein_coding	protein_coding	protein_coding	protein_coding	3	39	2	2.20949	2.2711050000000004	2.33272	0.0672585	0.0129984	0.183051	0.0991656
chr3	40533989	40534089	1402561	0	+	0.28	[0,0.28]	chr3	147394	10	UTR3	UTR3:EXON_MRNA:INTRON	ZNF621	ENSG00000172888.12	ENST00000310898.5:ENST00000431278.5:ENST00000339296.10:ENST00000490457.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	131	2	1.83992	2.271075	2.70223	0.0212029	0.00247858	0.123192	0.0446195
chr6	157384065	157384165	3011571	0	+	0.31	(0.28,0.32]	chr6	281268	14	INTRON	INTRON	ZDHHC14	ENSG00000175048.17	ENST00000414563.6:ENST00000359775.10	protein_coding	protein_coding	protein_coding	protein_coding	4	58	2	1.71442	2.271055	2.82769	0.0454351	0.0169391	0.164236	0.103888
chrX	13713422	13713521	7764085	0	-	0.313131	(0.28,0.32]	chrX	793545	13	UTR3	UTR3:EXON_MRNA	TRAPPC2	ENSG00000196459.15	ENST00000359680.9:ENST00000380579.6:ENST00000683983.1:ENST00000683569.1	protein_coding	protein_coding	protein_coding	protein_coding	4	58	2	1.71442	2.271055	2.82769	0.0454351	0.0169391	0.164236	0.103888
chr11	3915344	3915444	4724063	0	+	0.44	(0.408,0.44]	chr11	437138	114	INTRON	INTRON	STIM1	ENSG00000167323.12	ENST00000525403.5:ENST00000526596.2:ENST00000300737.8:ENST00000616714.4:ENST00000527651.5:ENST00000532610.5:ENST00000532919.5:ENST00000530554.5:ENST00000524822.5:ENST00000528656.5:ENST00000525055.5	protein_coding	protein_coding	protein_coding	protein_coding	5	63	2	1.93002	2.27086	2.6117	0.022095	0.00555224	0.123903	0.0648867
chr10	50399283	50399383	4618438	0	-	0.22	[0,0.28]	chr10	425422	546	INTRON	INTRON	SGMS1	ENSG00000198964.14	ENST00000429490.5:ENST00000361781.7:ENST00000619438.4:ENST00000492601.2:ENST00000609445.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	55	2	1.8986	2.270845	2.64309	0.0531512	0.0308646	0.179787	0.13151
chr2	202289922	202290022	985163	0	+	0.35	(0.32,0.35]	chr2	105743	2	SS3_PROX	SS3_PROX:INTRON	NOP58	ENSG00000055044.11	ENST00000264279.10:ENST00000492688.5:ENST00000478941.1:ENST00000433543.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	60	2	2.04237	2.27083	2.49929	0.0375542	0.00776612	0.140222	0.0787356
chr7	5190943	5191043	3271967	0	+	0.33	(0.32,0.35]	chr7	304083	1	SS5_PROX	SS5_PROX:INTRON	WIPI2	ENSG00000157954.15	ENST00000401525.7:ENST00000288828.9:ENST00000404704.7:ENST00000466014.5:ENST00000485854.5:ENST00000382384.6:ENST00000496867.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	60	2	2.1362	2.27075	2.4053	0.0291083	0.0108284	0.128029	0.0920575
chr19	10674299	10674397	7013419	0	+	0.295918	(0.28,0.32]	chr19	696780	24	INTRON	INTRON	ILF3	ENSG00000129351.17	ENST00000449870.5:ENST00000587928.5:ENST00000407004.7:ENST00000589998.5:ENST00000589600.5:ENST00000590009.5:ENST00000587505.5:ENST00000589052.5:ENST00000250241.12:ENST00000590261.5:ENST00000588657.5:ENST00000592763.5:ENST00000587840.5:ENST00000589416.5:ENST00000585835.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	195	2	1.63533	2.27071	2.90609	0.0175197	8.42669e-5	0.105003	0.00775927
chr10	32324821	32324921	4591421	0	-	0.52	(0.515,0.57]	chr10	423379	185	INTRON	INTRON	EPC1	ENSG00000120616.16	ENST00000375110.6:ENST00000319778.11:ENST00000667706.1:ENST00000263062.8:ENST00000479380.2:ENST00000495790.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	44	2	2.08547	2.27066	2.45585	0.0289426	0.00797827	0.1274	0.0798772
chr19	13838140	13838240	7143301	0	-	0.54	(0.515,0.57]	chr19	721118	144	EXON_LNCRNA	EXON_LNCRNA	MIR23AHG	ENSG00000267519.6	ENST00000587762.2	lncRNA	lncRNA	lncRNA	lncRNA	4	44	2	2.08547	2.27066	2.45585	0.0289426	0.00797827	0.1274	0.0798772
chr17	64634092	64634192	6816855	0	-	0.48	(0.476,0.515]	chr17	673955	271	INTRON	INTRON	SMURF2	ENSG00000108854.16	ENST00000262435.14:ENST00000582081.5:ENST00000578386.5:ENST00000585301.1:ENST00000578200.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	51	2	2.10874	2.27058	2.43242	0.0285608	0.0091895	0.12666	0.0855292
chr18	13053689	13053788	6877213	0	+	0.50505	(0.476,0.515]	chr18	681442	2	INTRON	INTRON	CEP192	ENSG00000101639.19	ENST00000325971.12:ENST00000506447.5:ENST00000589596.5:ENST00000513432.5:ENST00000511820.6:ENST00000510237.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	51	2	2.10874	2.27058	2.43242	0.0285608	0.0091895	0.12666	0.0855292
chr22	19846037	19846137	7555540	0	-	0.49	(0.476,0.515]	chr22	772443	243	INTRON	INTRON	GNB1L	ENSG00000185838.14	ENST00000329517.11:ENST00000403325.5:ENST00000405009.5:ENST00000460402.5:ENST00000481086.1:ENST00000453108.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	51	2	2.10874	2.27058	2.43242	0.0285608	0.0091895	0.12666	0.0855292
chr3	48079078	48079178	1687402	0	-	0.48	(0.476,0.515]	chr3	172280	628	INTRON	INTRON	MAP4	ENSG00000047849.22	ENST00000395734.7:ENST00000426837.6:ENST00000360240.10:ENST00000423088.5:ENST00000439356.2:ENST00000468075.2	protein_coding	protein_coding	protein_coding	protein_coding	4	51	2	2.10874	2.27058	2.43242	0.0285608	0.0091895	0.12666	0.0855292
chr2	182999485	182999583	1285635	0	-	0.357143	(0.35,0.378]	chr2	135406	33	INTRON	INTRON	NCKAP1	ENSG00000061676.15	ENST00000361354.9:ENST00000360982.2	protein_coding	protein_coding	protein_coding	protein_coding	4	51	2	2.07049	2.27057	2.47065	0.0386172	0.0140397	0.142656	0.102801
chr22	21817242	21817342	7560882	0	-	0.54	(0.515,0.57]	chr22	773388	90	INTRON	INTRON	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	4	44	2	2.21273	2.2705450000000003	2.32836	0.0196151	0.0126662	0.109486	0.0982897
chr7	148791533	148791632	3444636	0	+	0.555556	(0.515,0.57]	chr7	321266	7	INTRON	INTRON	CUL1	ENSG00000055130.18	ENST00000409469.5:ENST00000662716.1:ENST00000665936.1:ENST00000663044.1:ENST00000602748.5:ENST00000663835.1:ENST00000655324.1:ENST00000662132.1:ENST00000325222.9:ENST00000656001.1:ENST00000666124.1:ENST00000671421.1:ENST00000671397.1:ENST00000662670.1:ENST00000660240.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	44	2	2.21273	2.2705450000000003	2.32836	0.0196151	0.0126662	0.109486	0.0982897
chr8	63183064	63183163	3773134	0	+	0.484848	(0.476,0.515]	chr8	349936	73	INTRON	INTRON	YTHDF3	ENSG00000185728.17	ENST00000617200.1:ENST00000623280.3:ENST00000539294.6:ENST00000621957.4:ENST00000517371.5:ENST00000615676.1:ENST00000621413.4:ENST00000612880.4:ENST00000617952.4:ENST00000621890.4:ENST00000619337.4:ENST00000613853.4:ENST00000621820.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	51	2	2.16377	2.27054	2.37731	0.0243026	0.0111793	0.12011	0.0937192
chr16	70242436	70242532	6509985	0	-	0.46875	(0.44,0.476]	chr16	630478	8	INTRON	INTRON	SMG1P7	ENSG00000261556.10	ENST00000565246.7:ENST00000568855.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	10	120	2	2.08356	2.2705149999999996	2.45747	0.00502853	6.55527e-4	0.0619934	0.0232396
chr19	38630301	38630401	7065651	0	+	0.4	(0.378,0.408]	chr19	705455	2	SS3_PROX	SS3_PROX:INTRON	EIF3K	ENSG00000178982.10	ENST00000614624.4:ENST00000593149.5:ENST00000588934.5:ENST00000538434.5:ENST00000593062.5:ENST00000248342.9:ENST00000545173.6:ENST00000591409.5:ENST00000592558.1:ENST00000588299.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	89	2	2.04001	2.2705	2.50099	0.00996995	0.00245021	0.08427	0.0457892
chr7	99498240	99498335	3584096	0	-	0.378947	(0.378,0.408]	chr7	333875	5	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	ZNF394	ENSG00000160908.15	ENST00000651364.1:ENST00000462024.1:ENST00000337673.7:ENST00000426306.2:ENST00000651061.1:ENST00000394177.3:ENST00000481881.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	89	2	2.04001	2.2705	2.50099	0.00996995	0.00245021	0.08427	0.0457892
chr1	51401199	51401283	453154	0	-	0.380952	(0.378,0.408]	chr1	54334	1	SS3_PROX	SS3_PROX:INTRON	EPS15	ENSG00000085832.17	ENST00000371733.8:ENST00000371730.6:ENST00000486505.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	123	2	1.79655	2.270445	2.74434	0.0118498	2.94671e-4	0.0899583	0.0153497
chr13	95141396	95141496	5638254	0	-	0.36	(0.35,0.378]	chr13	537056	250	INTRON	INTRON	ABCC4	ENSG00000125257.16	ENST00000645237.2:ENST00000643051.1:ENST00000643842.1:ENST00000646439.1:ENST00000644880.1:ENST00000643816.1:ENST00000536256.3:ENST00000643556.1:ENST00000629385.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	50	2	1.65083	2.27043	2.89003	0.0521072	0.0122391	0.177022	0.0910127
chr1	54380886	54380986	463506	0	-	0.48	(0.476,0.515]	chr1	55784	242	INTRON	INTRON	SSBP3	ENSG00000157216.16	ENST00000610401.5:ENST00000357475.9:ENST00000371319.8:ENST00000417664.7:ENST00000533946.6:ENST00000371320.8:ENST00000525990.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	12	143	2	2.16879	2.2703949999999997	2.372	0.00158904	0.00103712	0.0364097	0.0295413
chr16	22319346	22319446	6321767	0	+	0.37	(0.35,0.378]	chr16	605259	4	SS5_PROX	SS5_PROX:INTRON	POLR3E	ENSG00000058600.16	ENST00000615879.4:ENST00000299853.10:ENST00000564209.5:ENST00000418581.6:ENST00000359210.8:ENST00000564061.5:ENST00000564750.5:ENST00000569757.1:ENST00000569787.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	124	2	1.76452	2.270385	2.77625	0.0109566	7.04769e-4	0.0873179	0.0241881
chr2	55036517	55036617	1121270	0	-	0.46	(0.44,0.476]	chr2	120163	79	INTRON	INTRON	RTN4	ENSG00000115310.19	ENST00000404909.5:ENST00000394611.6:ENST00000317610.11:ENST00000357732.8:ENST00000337526.11:ENST00000357376.7:ENST00000405240.5:ENST00000438462.1:ENST00000427710.5	protein_coding	protein_coding	protein_coding	protein_coding	15	179	2	2.03549	2.2703699999999998	2.50525	0.0042121	8.23522e-5	0.0572185	0.00762299
chr5	81985766	81985866	2402837	0	+	0.61	(0.57,1]	chr5	232106	91	INTRON	INTRON	ATG10	ENSG00000152348.16	ENST00000282185.8:ENST00000355178.8:ENST00000510085.1:ENST00000458350.7:ENST00000513443.5:ENST00000504770.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	25	2	1.74185	2.2703699999999998	2.79889	0.0401765	0.0110274	0.143911	0.0927187
chr6	42745692	42745786	3095465	0	-	0.62766	(0.57,1]	chr6	289572	7	CDS	CDS:EXON_MRNA	TBCC	ENSG00000124659.7	ENST00000372876.2	protein_coding	protein_coding	protein_coding	protein_coding	4	25	2	1.74185	2.2703699999999998	2.79889	0.0401765	0.0110274	0.143911	0.0927187
chr17	37316553	37316653	6762141	0	-	0.4	(0.378,0.408]	chr17	664944	169	INTRON	INTRON	ACACA	ENSG00000278540.5	ENST00000616317.5:ENST00000614428.4:ENST00000613146.4:ENST00000615229.4:ENST00000621960.1:ENST00000617548.1:ENST00000616352.4:ENST00000614789.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	74	2	1.75204	2.2703550000000003	2.78867	0.0268575	0.00226991	0.123442	0.0437013
chr5	65934299	65934399	2370921	0	+	0.32	(0.28,0.32]	chr5	228472	71	INTRON	INTRON	ERBIN	ENSG00000112851.15	ENST00000380943.6:ENST00000507490.1:ENST00000416865.6:ENST00000380935.5:ENST00000284037.10:ENST00000380938.6:ENST00000511297.5:ENST00000506030.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	67	2	1.76061	2.270325	2.78004	0.0253826	0.0193244	0.133676	0.108861
chr1	100102654	100102754	515551	0	-	0.31	(0.28,0.32]	chr1	60435	3	SS5_PROX	SS5_PROX:INTRON	SASS6	ENSG00000156876.10	ENST00000462159.1:ENST00000287482.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	139	2	1.93143	2.2702	2.60897	0.0121651	8.17961e-4	0.0910127	0.0261401
chr2	96889941	96890040	1182124	0	-	0.464646	(0.44,0.476]	chr2	126720	111	INTRON	INTRON	FAM178B	ENSG00000168754.15	ENST00000393526.6:ENST00000490605.3:ENST00000470789.5:ENST00000494172.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	26	304	2	2.12234	2.270165	2.41799	4.48402e-4	8.15707e-5	0.0196044	0.00756205
chr16	8110322	8110422	6441612	0	-	0.32	(0.28,0.32]	chr16	620351	1027	INTRON	INTRON	ENSG00000260289	ENSG00000260289.2	ENST00000670665.1:ENST00000654046.1:ENST00000567103.2	lncRNA	lncRNA	lncRNA	lncRNA	6	92	2	1.86858	2.270055	2.67153	0.0214814	0.00436402	0.114341	0.060356
chr3	196073234	196073331	1897464	0	-	0.381443	(0.378,0.408]	chr3	189968	7	INTRON	INTRON	TFRC	ENSG00000072274.13	ENST00000420415.5:ENST00000360110.9:ENST00000392396.7:ENST00000421258.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	13	162	2	1.99288	2.2700199999999997	2.54716	0.00540773	1.44801e-4	0.0644789	0.0104652
chr10	3123311	3123410	4382106	0	+	0.545455	(0.515,0.57]	chr10	404146	29	INTRON	INTRON	PFKP	ENSG00000067057.18	ENST00000381125.9:ENST00000381075.7:ENST00000678206.1:ENST00000678089.1:ENST00000676796.1:ENST00000415005.6:ENST00000413079.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	68	2	1.54678	2.26997	2.99316	0.0324987	9.21623e-4	0.145164	0.0278396
chr22	49611848	49611948	7602199	0	-	0.51	(0.476,0.515]	chr22	778570	162	INTRON	INTRON	MIR3667HG	ENSG00000188511.13	ENST00000414287.5:ENST00000416411.1:ENST00000689875.1	lncRNA	lncRNA	lncRNA	lncRNA	8	94	2	1.81741	2.269845	2.72228	0.0141271	8.52725e-4	0.0959618	0.0264928
chr7	121127457	121127557	3395035	0	+	0.17	[0,0.28]	chr7	317740	2	SS5_PROX	SS5_PROX:INTRON	CPED1	ENSG00000106034.18	ENST00000310396.10:ENST00000428526.5:ENST00000450913.6:ENST00000423795.5:ENST00000443817.1	protein_coding	protein_coding	protein_coding	protein_coding	4	67	2	1.99345	2.269845	2.54624	0.0388449	0.0211881	0.143072	0.123133
chr8	95135530	95135630	3803010	0	+	0.44	(0.408,0.44]	chr8	352652	8	INTRON	INTRON	PLEKHF2	ENSG00000175895.4	ENST00000315367.4:ENST00000519516.1	protein_coding	protein_coding	protein_coding	protein_coding	5	62	2	2.17784	2.269845	2.36185	0.0133164	0.00916282	0.094512	0.0855292
chr9	123902805	123902905	4345753	0	-	0.25	[0,0.28]	chr9	399137	234	INTRON	INTRON	DENND1A	ENSG00000119522.17	ENST00000373624.6:ENST00000394215.7:ENST00000373620.7:ENST00000373618.1	protein_coding	protein_coding	protein_coding	protein_coding	4	67	2	1.99345	2.269845	2.54624	0.0388449	0.0211881	0.143072	0.123133
chr7	101828371	101828471	3366472	0	+	0.41	(0.408,0.44]	chr7	315215	90	INTRON	INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000497815.5:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000607092.1:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000558469.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	64	2	1.81759	2.269835	2.72208	0.0316273	0.00364449	0.144405	0.0535094
chrX	80733089	80733157	7849658	0	-	0.426471	(0.408,0.44]	chrX	800553	3	SS5_PROX	SS5_PROX:INTRON	BRWD3	ENSG00000165288.11	ENST00000373275.5	protein_coding	protein_coding	protein_coding	protein_coding	11	132	2	1.96803	2.269825	2.57162	0.00573171	3.50541e-4	0.0657377	0.0166929
chr6	154738387	154738486	3001866	0	+	0.323232	(0.32,0.35]	chr6	280731	41	INTRON	INTRON	SCAF8	ENSG00000213079.10	ENST00000367186.7:ENST00000417268.3:ENST00000461219.5:ENST00000367178.8:ENST00000464628.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	80	2	1.22414	2.269735	3.31533	0.0625148	0.00323121	0.195535	0.0507087
chr13	113469649	113469748	5652618	0	-	0.525253	(0.515,0.57]	chr13	538698	64	INTRON	INTRON	DCUN1D2	ENSG00000150401.15	ENST00000478244.6:ENST00000332592.7:ENST00000375403.6:ENST00000438545.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	33	2	1.7074	2.26964	2.83188	0.0779432	0.0108207	0.196685	0.0920575
chr9	130765154	130765254	4214376	0	+	0.42	(0.408,0.44]	chr9	386427	503	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000393293.4	protein_coding	protein_coding	protein_coding	protein_coding	19	234	2	2.1077	2.2696300000000003	2.43156	8.89302e-4	1.85566e-4	0.0272462	0.0123998
chr1	165907922	165908022	244566	0	+	0.31	(0.28,0.32]	chr1	29196	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	UCK2	ENSG00000143179.16	ENST00000367879.9:ENST00000642653.1:ENST00000462329.5:ENST00000469256.6:ENST00000463772.5:ENST00000479872.5:ENST00000475333.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	48	2	2.0243	2.26959	2.51488	0.0380957	0.0364967	0.153759	0.141678
chr19	21454610	21454709	7158750	0	-	0.434343	(0.408,0.44]	chr19	723692	27	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	ENSG00000268119	ENSG00000268119.7	ENST00000596705.5:ENST00000597444.6:ENST00000594557.1:ENST00000599993.7:ENST00000600469.7:ENST00000656526.1:ENST00000663704.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	4	46	2	1.75791	2.269565	2.78122	0.0378795	0.015812	0.157034	0.101453
chr1	110354676	110354776	182497	0	+	0.51	(0.476,0.515]	chr1	20251	64	INTRON	INTRON	LAMTOR5-AS1	ENSG00000224699.10	ENST00000626572.2	lncRNA	lncRNA	lncRNA	lncRNA	3	38	2	2.13304	2.2695600000000002	2.40608	0.0425709	0.024866	0.148082	0.132101
chr19	10150897	10150997	7134399	0	-	0.48	(0.476,0.515]	chr19	719132	1	SS5_PROX	SS5_PROX:INTRON	DNMT1	ENSG00000130816.17	ENST00000586667.2:ENST00000340748.8:ENST00000359526.9:ENST00000592705.5:ENST00000679103.1:ENST00000677634.1:ENST00000676820.1:ENST00000677250.1:ENST00000677013.1:ENST00000677685.1:ENST00000677616.1:ENST00000676604.1:ENST00000678024.1:ENST00000676868.1:ENST00000677783.1:ENST00000678694.1:ENST00000679100.1:ENST00000678647.1:ENST00000676610.1:ENST00000678804.1:ENST00000679313.1:ENST00000677946.1:ENST00000586799.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	38	2	2.13304	2.2695600000000002	2.40608	0.0425709	0.024866	0.148082	0.132101
chr19	10667247	10667346	7013342	0	+	0.525253	(0.515,0.57]	chr19	696763	2	INTRON	INTRON	ILF3	ENSG00000129351.17	ENST00000449870.5:ENST00000587928.5:ENST00000407004.7:ENST00000589998.5:ENST00000589600.5:ENST00000589283.5:ENST00000590009.5:ENST00000593199.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	33	2	1.79136	2.26954	2.74772	0.0638444	0.0142192	0.177811	0.103638
chrX	48955676	48955776	7816054	0	-	0.54	(0.515,0.57]	chrX	796867	110	INTRON	INTRON	OTUD5	ENSG00000068308.15	ENST00000376488.8:ENST00000396743.7:ENST00000455452.5:ENST00000156084.8:ENST00000428668.2:ENST00000484499.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	33	2	1.79136	2.26954	2.74772	0.0638444	0.0142192	0.177811	0.103638
chrX	73964945	73965042	7682307	0	+	0.350515	(0.35,0.378]	chrX	786634	18	INTRON	INTRON	JPX	ENSG00000225470.8	ENST00000664637.1:ENST00000639185.1:ENST00000655090.1:ENST00000640437.1:ENST00000660546.1:ENST00000667886.1:ENST00000660840.1:ENST00000657179.1:ENST00000670506.1:ENST00000657910.1:ENST00000662120.1:ENST00000671207.1:ENST00000659254.1:ENST00000656624.1:ENST00000667573.1:ENST00000660856.1:ENST00000660836.1:ENST00000668590.1:ENST00000658649.1:ENST00000414209.6:ENST00000654137.1:ENST00000670994.1:ENST00000653479.1:ENST00000602772.5:ENST00000655879.1:ENST00000657372.1:ENST00000657096.1:ENST00000602985.6:ENST00000670685.1:ENST00000670503.1:ENST00000663027.1:ENST00000654995.1:ENST00000602895.6:ENST00000654374.1:ENST00000660087.1:ENST00000665032.1:ENST00000671336.1:ENST00000671476.1:ENST00000667057.1:ENST00000670192.1:ENST00000670464.1:ENST00000665345.1:ENST00000661546.1:ENST00000662543.1:ENST00000602938.6:ENST00000664295.1:ENST00000654005.1:ENST00000669149.1:ENST00000659852.1:ENST00000656509.1:ENST00000602294.6:ENST00000667294.1:ENST00000663470.1:ENST00000602920.6:ENST00000671021.1:ENST00000659849.1:ENST00000667937.1:ENST00000661130.1:ENST00000654196.1:ENST00000655994.1:ENST00000659373.1:ENST00000662239.1:ENST00000670805.1:ENST00000656263.1:ENST00000653069.1:ENST00000657638.1:ENST00000653808.1:ENST00000653929.1:ENST00000653885.1:ENST00000659023.1:ENST00000602546.5:ENST00000659622.1:ENST00000671518.1:ENST00000670408.1	lncRNA	lncRNA	lncRNA	lncRNA	3	45	2	2.23651	2.2695	2.30249	0.0519726	0.020879	0.176696	0.111766
chr1	77979057	77979110	494533	0	-	0.45283	(0.44,0.476]	chr1	58572	2	UTR5	UTR5:EXON_MRNA	FUBP1	ENSG00000162613.17	ENST00000370768.7:ENST00000294623.8:ENST00000370767.5:ENST00000421641.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	38	2	2.0776	2.269475	2.46135	0.0374637	0.0292951	0.141862	0.140008
chr19	47174389	47174488	7084319	0	+	0.444444	(0.44,0.476]	chr19	708798	41	INTRON	INTRON	SAE1	ENSG00000142230.13	ENST00000413379.7:ENST00000270225.12:ENST00000598840.5:ENST00000414294.6:ENST00000660039.1:ENST00000664120.1:ENST00000596995.1:ENST00000392776.3:ENST00000659110.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	38	2	2.0776	2.269475	2.46135	0.0374637	0.0292951	0.141862	0.140008
chr19	3979128	3979228	7119098	0	-	0.42	(0.408,0.44]	chr19	716075	4	SS5_PROX	SS5_PROX:INTRON	EEF2	ENSG00000167658.16	ENST00000309311.7:ENST00000596417.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	37	441	2	2.23659	2.2694549999999998	2.30232	1.38346e-4	6.84284e-5	0.0107072	0.00684369
chr14	35020649	35020747	5691432	0	+	0.285714	(0.28,0.32]	chr14	541310	12	INTRON	INTRON	SRP54	ENSG00000100883.13	ENST00000556994.5:ENST00000678836.1:ENST00000546080.6:ENST00000555746.6:ENST00000678963.1:ENST00000677561.1:ENST00000678477.1:ENST00000677621.1:ENST00000678519.1:ENST00000678627.1:ENST00000216774.11:ENST00000555557.5:ENST00000678274.1:ENST00000677647.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	60	2	2.14534	2.269405	2.39347	0.0504457	0.0117054	0.156383	0.0962115
chr2	161345819	161345919	901486	0	+	0.32	(0.28,0.32]	chr2	99704	266	INTRON	INTRON	PSMD14	ENSG00000115233.12	ENST00000409682.8:ENST00000437630.1	protein_coding	protein_coding	protein_coding	protein_coding	4	60	2	2.14534	2.269405	2.39347	0.0504457	0.0117054	0.156383	0.0962115
chr2	55020101	55020200	1121103	0	-	0.333333	(0.32,0.35]	chr2	120149	57	INTRON	INTRON	RTN4	ENSG00000115310.19	ENST00000404909.5:ENST00000394611.6:ENST00000317610.11:ENST00000357732.8:ENST00000337526.11:ENST00000357376.7:ENST00000405240.5:ENST00000438462.1	protein_coding	protein_coding	protein_coding	protein_coding	9	87	2	1.37637	2.2693700000000003	3.16237	0.0329291	0.00550276	0.145171	0.0648867
chr21	43106250	43106350	7468331	0	-	0.37	(0.35,0.378]	chr21	761121	11	INTRON	INTRON	U2AF1	ENSG00000160201.12	ENST00000291552.9:ENST00000380276.6:ENST00000464750.5:ENST00000475639.5:ENST00000486519.5:ENST00000496462.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	56	2	2.04224	2.269335	2.49643	0.0363073	0.00752974	0.138959	0.0773151
chr7	140469293	140469393	3661525	0	-	0.39	(0.378,0.408]	chr7	339916	87	INTRON	INTRON	MKRN1	ENSG00000133606.11	ENST00000255977.7:ENST00000475010.5:ENST00000495305.5:ENST00000474576.5:ENST00000480552.5:ENST00000496169.5:ENST00000443720.6:ENST00000471104.5:ENST00000467513.5:ENST00000494939.1:ENST00000498535.1:ENST00000473444.1:ENST00000475180.5:ENST00000481705.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	108	2	1.48475	2.26931	3.05387	0.0353336	1.51003e-4	0.137535	0.0106137
chr2	177262702	177262802	1275827	0	-	0.26	[0,0.28]	chr2	134708	281	INTRON	INTRON	NFE2L2	ENSG00000116044.16	ENST00000397063.8:ENST00000464747.5:ENST00000397062.8:ENST00000446151.6:ENST00000449627.1:ENST00000448782.5:ENST00000430047.1:ENST00000586532.5:ENST00000421929.5:ENST00000423513.5:ENST00000588123.1:ENST00000477534.1:ENST00000462023.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	104	2	1.83992	2.269305	2.69869	0.0212029	0.00643225	0.123192	0.0697113
chr16	16084537	16084637	6309124	0	+	0.47	(0.44,0.476]	chr16	603608	6	INTRON	INTRON	ABCC1	ENSG00000103222.20	ENST00000678422.1:ENST00000677164.1:ENST00000399408.7:ENST00000572882.3:ENST00000399410.8:ENST00000575422.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	38	2	1.93084	2.26929	2.60774	0.0443175	0.0255874	0.162302	0.120269
chr8	109343007	109343106	3847556	0	+	0.323232	(0.32,0.35]	chr8	354372	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ENY2	ENSG00000120533.13	ENST00000521662.5:ENST00000522766.5:ENST00000517311.5:ENST00000339942.11:ENST00000520147.5:ENST00000521688.6:ENST00000522407.5:ENST00000523335.1:ENST00000517756.5:ENST00000517350.5:ENST00000523707.1:ENST00000521619.1:ENST00000518118.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	68	2	1.50258	2.269275	3.03597	0.0399817	0.00832487	0.161534	0.0774402
chr19	3431529	3431628	7000278	0	+	0.515152	(0.476,0.515]	chr19	694183	60	INTRON	INTRON	NFIC	ENSG00000141905.19	ENST00000641145.1:ENST00000589123.5:ENST00000395111.7:ENST00000586919.5:ENST00000341919.7:ENST00000443272.3:ENST00000590282.5	protein_coding	protein_coding	protein_coding	protein_coding	3	38	2	1.8388	2.269235	2.69967	0.0564473	0.0195838	0.184423	0.109483
chr22	49590351	49590451	7601983	0	-	0.5	(0.476,0.515]	chr22	778566	1488	INTRON	INTRON	MIR3667HG	ENSG00000188511.13	ENST00000414287.5:ENST00000416411.1	lncRNA	lncRNA	lncRNA	lncRNA	3	38	2	1.8388	2.269235	2.69967	0.0564473	0.0195838	0.184423	0.109483
chr6	15444615	15444715	2824935	0	+	0.48	(0.476,0.515]	chr6	265204	339	INTRON	INTRON	JARID2	ENSG00000008083.14	ENST00000341776.7:ENST00000397311.4	protein_coding	protein_coding	protein_coding	protein_coding	3	38	2	1.8388	2.269235	2.69967	0.0564473	0.0195838	0.184423	0.109483
chr7	107310642	107310742	3610486	0	-	0.36	(0.35,0.378]	chr7	336666	119	INTRON	INTRON	COG5	ENSG00000164597.15	ENST00000297135.9:ENST00000347053.8:ENST00000393603.7	protein_coding	protein_coding	protein_coding	protein_coding	4	56	2	2.14264	2.269235	2.39583	0.0274795	0.0107976	0.123904	0.0920575
chr8	127930133	127930233	3861416	0	+	0.48	(0.476,0.515]	chr8	355450	131	INTRON	INTRON	PVT1	ENSG00000249859.13	ENST00000667305.1:ENST00000690350.1:ENST00000653522.1:ENST00000664214.1:ENST00000664139.1:ENST00000661830.1:ENST00000657289.1:ENST00000504719.7:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000656880.1:ENST00000660200.1:ENST00000669132.1:ENST00000657211.1:ENST00000653845.1:ENST00000517525.2:ENST00000665856.1:ENST00000651587.1:ENST00000692980.1:ENST00000666353.1:ENST00000657183.1:ENST00000654324.1:ENST00000658556.1:ENST00000657693.1:ENST00000666080.1:ENST00000667539.1:ENST00000521951.1:ENST00000524165.6:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000664293.1:ENST00000657297.1:ENST00000662410.1:ENST00000670795.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000654091.1:ENST00000523328.6:ENST00000657356.1:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000662061.1:ENST00000667204.1:ENST00000656491.1:ENST00000667714.1:ENST00000654105.1:ENST00000665721.1:ENST00000518528.2:ENST00000669416.1:ENST00000660438.1:ENST00000661160.1:ENST00000659326.1:ENST00000665246.1:ENST00000657384.1:ENST00000666842.1:ENST00000517790.2:ENST00000522963.6:ENST00000654369.1:ENST00000661625.1:ENST00000657596.1:ENST00000664995.1:ENST00000656532.1:ENST00000661988.1:ENST00000670714.1:ENST00000669951.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000656693.1:ENST00000668123.1:ENST00000666776.1:ENST00000664299.1:ENST00000669272.1:ENST00000659912.1:ENST00000670532.1:ENST00000660896.1:ENST00000667149.1:ENST00000656396.1:ENST00000523068.2:ENST00000521122.2:ENST00000520913.2:ENST00000519481.6:ENST00000651568.1:ENST00000669082.1:ENST00000665166.1:ENST00000656948.1:ENST00000671088.1:ENST00000664924.1:ENST00000670204.1:ENST00000652695.1:ENST00000670602.1:ENST00000651664.1:ENST00000517838.6:ENST00000663461.1:ENST00000513868.6:ENST00000670626.1:ENST00000653406.1:ENST00000658242.1:ENST00000669407.1	lncRNA	lncRNA	lncRNA	lncRNA	3	38	2	1.8388	2.269235	2.69967	0.0564473	0.0195838	0.184423	0.109483
chr9	128316196	128316296	4358351	0	-	0.5	(0.476,0.515]	chr9	400476	3	SS3_PROX	SS3_PROX:INTRON	TRUB2	ENSG00000167112.10	ENST00000372890.6:ENST00000460320.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	38	2	1.8388	2.269235	2.69967	0.0564473	0.0195838	0.184423	0.109483
chrX	123701189	123701287	7878737	0	-	0.489796	(0.476,0.515]	chrX	802576	31	INTRON	INTRON	THOC2	ENSG00000125676.20	ENST00000245838.13:ENST00000355725.8:ENST00000433883.1:ENST00000419789.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	38	2	1.8388	2.269235	2.69967	0.0564473	0.0195838	0.184423	0.109483
chr19	3392027	3392126	6999881	0	+	0.393939	(0.378,0.408]	chr19	694173	94	INTRON	INTRON	NFIC	ENSG00000141905.19	ENST00000641145.1:ENST00000589123.5:ENST00000395111.7:ENST00000586919.5:ENST00000341919.7:ENST00000443272.3:ENST00000590282.5	protein_coding	protein_coding	protein_coding	protein_coding	5	67	2	2.24048	2.26923	2.29798	0.0147606	0.00867536	0.106702	0.0787771
chr7	100871008	100871060	3365780	0	+	0.326923	(0.32,0.35]	chr7	315001	1	SS3_ADJ	SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TRIP6	ENSG00000087077.14	ENST00000200457.9:ENST00000476870.5:ENST00000619988.4:ENST00000429658.1:ENST00000488670.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	15	205	2	2.21602	2.269095	2.32217	0.00155397	6.24378e-4	0.0359141	0.0224805
chr2	101709335	101709435	836175	0	+	0.48	(0.476,0.515]	chr2	93900	104	INTRON	INTRON	MAP4K4	ENSG00000071054.17	ENST00000427603.5:ENST00000324219.9:ENST00000350878.9:ENST00000425019.6:ENST00000625522.3:ENST00000413150.6:ENST00000634702.1:ENST00000456652.5:ENST00000347699.8:ENST00000417294.5	protein_coding	protein_coding	protein_coding	protein_coding	4	46	2	1.52615	2.2690599999999996	3.01197	0.0739267	0.00633162	0.190914	0.0722266
chr2	214809111	214809211	1326183	0	-	0.51	(0.476,0.515]	chr2	138640	3	SS5_PROX	SS5_PROX:INTRON	BARD1	ENSG00000138376.11	ENST00000260947.9:ENST00000617164.5:ENST00000619009.5:ENST00000613374.5:ENST00000613706.5:ENST00000421162.2:ENST00000613192.2:ENST00000620057.4:ENST00000455743.5:ENST00000471787.1:ENST00000479904.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	46	2	1.52615	2.2690599999999996	3.01197	0.0739267	0.00633162	0.190914	0.0722266
chr16	11775313	11775413	6445477	0	-	0.42	(0.408,0.44]	chr16	620934	3	SS3_PROX	SS3_PROX:INTRON	ZC3H7A	ENSG00000122299.12	ENST00000396516.6:ENST00000355758.9:ENST00000571198.5:ENST00000576009.1	protein_coding	protein_coding	protein_coding	protein_coding	9	104	2	2.11401	2.269025	2.42404	0.00413548	0.00230448	0.0566868	0.0440636
chr17	40130012	40130105	6609041	0	+	0.580645	(0.57,1]	chr17	643634	5	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	MSL1	ENSG00000188895.12	ENST00000398532.9:ENST00000577454.5:ENST00000578648.5:ENST00000579565.5:ENST00000582884.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	39	2	2.1643	2.26898	2.37366	0.00941704	0.00373392	0.0861183	0.0535844
chr7	87896279	87896376	3346879	0	+	0.268041	[0,0.28]	chr7	311870	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	DBF4	ENSG00000006634.8	ENST00000413643.5:ENST00000265728.6:ENST00000431138.5:ENST00000430279.5:ENST00000498144.5:ENST00000498726.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	75	2	1.94204	2.2688699999999997	2.5957	0.0544139	0.00656974	0.164972	0.0736092
chr7	138505307	138505407	3435092	0	+	0.25	[0,0.28]	chr7	319965	5	INTRON	INTRON	TRIM24	ENSG00000122779.18	ENST00000343526.9:ENST00000415680.6:ENST00000497516.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	75	2	1.94204	2.2688699999999997	2.5957	0.0544139	0.00656974	0.164972	0.0736092
chr4	39763188	39763288	1953645	0	+	0.45	(0.44,0.476]	chr4	195650	20	INTRON	INTRON	UBE2K	ENSG00000078140.14	ENST00000510934.5:ENST00000261427.10:ENST00000438068.6:ENST00000513231.5:ENST00000503368.5:ENST00000445950.2:ENST00000510719.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	15	158	2	1.66343	2.26886	2.87429	0.00584571	2.11295e-4	0.0689807	0.0132201
chrX	123864442	123864542	7716230	0	+	0.44	(0.408,0.44]	chrX	789403	35	INTRON	INTRON	XIAP	ENSG00000101966.13	ENST00000422098.5:ENST00000481776.5:ENST00000434753.7:ENST00000497906.5:ENST00000468691.5:ENST00000430625.1:ENST00000371199.8:ENST00000497640.1:ENST00000355640.3:ENST00000468503.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	121	2	2.00973	2.2687049999999997	2.52768	0.0069268	4.47322e-4	0.0718189	0.0191768
chr4	134696	134795	1905747	0	+	0.212121	[0,0.28]	chr4	191032	28	INTRON	INTRON	ZNF718	ENSG00000250312.8	ENST00000642529.1:ENST00000510175.6:ENST00000609714.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	104	2	1.68871	2.268655	2.8486	0.0406982	0.00254189	0.1451	0.0465056
chr15	92945633	92945726	6104159	0	+	0.451613	(0.44,0.476]	chr15	581452	13	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	ENSG00000279765:CHD2	ENSG00000279765.3:ENSG00000173575.22	ENST00000630790.1:ENST00000626874.2:ENST00000394196.9:ENST00000635856.1:ENST00000420239.7:ENST00000628375.2:ENST00000625990.3:ENST00000626782.2:ENST00000637572.1:ENST00000637613.1:ENST00000636881.1:ENST00000625243.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	53	2	1.7965	2.2685649999999997	2.74063	0.0205549	0.0176095	0.122348	0.105143
chr2	172579098	172579198	920137	0	+	0.46	(0.44,0.476]	chr2	101374	79	INTRON	INTRON	PDK1	ENSG00000152256.14	ENST00000392571.6:ENST00000410055.5:ENST00000282077.8:ENST00000466437.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	53	2	1.7965	2.2685649999999997	2.74063	0.0205549	0.0176095	0.122348	0.105143
chr2	95842483	95842582	1178177	0	-	0.282828	(0.28,0.32]	chr2	125722	50	INTRON	INTRON	ANKRD36C	ENSG00000174501.15	ENST00000612359.4	protein_coding	protein_coding	protein_coding	protein_coding	4	58	2	1.6633	2.26856	2.87382	0.0522231	0.014868	0.177274	0.0989021
chr1	50579719	50579819	448436	0	-	0.39	(0.378,0.408]	chr1	54195	121	INTRON	INTRON	FAF1	ENSG00000185104.21	ENST00000396153.7:ENST00000494400.5:ENST00000472808.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	40	2	1.8252	2.268515	2.71183	0.0619563	0.0170789	0.174514	0.110899
chr16	90192432	90192531	6424816	0	+	0.383838	(0.378,0.408]	chr16	617262	48	INTRON	INTRON	LINC02193	ENSG00000260923.7	ENST00000568418.1:ENST00000656587.1:ENST00000668099.1:ENST00000569162.2:ENST00000665776.1:ENST00000669853.1:ENST00000668039.1:ENST00000658135.1:ENST00000663101.1:ENST00000663757.1:ENST00000568947.2	lncRNA	lncRNA	lncRNA	lncRNA	3	40	2	1.8252	2.268515	2.71183	0.0619563	0.0170789	0.174514	0.110899
chr17	51194537	51194625	6797197	0	-	0.397727	(0.378,0.408]	chr17	671049	7	INTRON	INTRON	MBTD1	ENSG00000011258.16	ENST00000586178.6:ENST00000415868.5:ENST00000405860.7:ENST00000591270.1:ENST00000376381.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	40	2	1.8252	2.268515	2.71183	0.0619563	0.0170789	0.174514	0.110899
chr17	16430998	16431093	6562571	0	+	0.294737	(0.28,0.32]	chr17	637884	17	INTRON	INTRON	TRPV2	ENSG00000187688.15	ENST00000338560.12:ENST00000583241.1:ENST00000577277.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	48	2	2.08149	2.2684699999999998	2.45545	0.0438092	0.031124	0.14901	0.143644
chr2	167912555	167912655	1258928	0	-	0.29	(0.28,0.32]	chr2	133340	114	INTRON	INTRON	B3GALT1-AS1	ENSG00000235335.3	ENST00000430546.2:ENST00000657553.1:ENST00000670221.1:ENST00000436982.2	lncRNA	lncRNA	lncRNA	lncRNA	3	48	2	2.08149	2.2684699999999998	2.45545	0.0438092	0.031124	0.14901	0.143644
chr3	25654250	25654350	1642063	0	-	0.31	(0.28,0.32]	chr3	168598	84	INTRON	INTRON	TOP2B	ENSG00000077097.16	ENST00000264331.9:ENST00000435706.6:ENST00000424225.1	protein_coding	protein_coding	protein_coding	protein_coding	3	48	2	2.08149	2.2684699999999998	2.45545	0.0438092	0.031124	0.14901	0.143644
chr17	42508071	42508127	6611807	0	+	0.339286	(0.32,0.35]	chr17	644178	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ATP6V0A1	ENSG00000033627.17	ENST00000393829.6:ENST00000343619.9:ENST00000537728.5:ENST00000264649.10:ENST00000585525.5:ENST00000544137.5:ENST00000587510.5:ENST00000586201.5:ENST00000588138.1:ENST00000585828.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	60	2	2.18092	2.268415	2.35591	0.0256608	0.0128129	0.120491	0.0990564
chr4	139117950	139118050	2246751	0	-	0.23	[0,0.28]	chr4	219581	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	ELF2	ENSG00000109381.21	ENST00000394235.6:ENST00000686138.1:ENST00000379550.5:ENST00000511184.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	76	2	1.67675	2.268415	2.86008	0.0352695	0.0177015	0.150332	0.105304
chr7	105347658	105347758	3603493	0	-	0.5	(0.476,0.515]	chr7	336161	407	INTRON	INTRON	SRPK2	ENSG00000135250.17	ENST00000393651.8:ENST00000482897.5:ENST00000460391.5:ENST00000462282.5:ENST00000465112.5:ENST00000482862.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	51	2	2.21677	2.26839	2.32001	0.0207026	0.0136217	0.110999	0.101682
chr1	211300379	211300477	306117	0	+	0.438776	(0.408,0.44]	chr1	35296	43	INTRON	INTRON	RCOR3	ENSG00000117625.14	ENST00000367006.8:ENST00000419091.7:ENST00000452621.6:ENST00000528926.5:ENST00000367005.8:ENST00000534460.5:ENST00000529763.5:ENST00000485186.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	46	2	1.81759	2.26835	2.71911	0.0316273	0.0189489	0.144405	0.108861
chr2	32511233	32511333	732387	0	+	0.3	(0.28,0.32]	chr2	84568	2	INTRON	INTRON	BIRC6	ENSG00000115760.15	ENST00000421745.7:ENST00000648282.1:ENST00000496555.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	48	2	1.96475	2.26835	2.57195	0.0428385	0.0331711	0.162255	0.133994
chr2	28903814	28903913	725268	0	+	0.494949	(0.476,0.515]	chr2	83787	13	INTRON	INTRON	WDR43	ENSG00000163811.12	ENST00000407426.8:ENST00000440983.1	protein_coding	protein_coding	protein_coding	protein_coding	11	118	2	1.50914	2.268345	3.02755	0.0212469	1.7047e-4	0.11322	0.0113543
chr16	85367945	85368045	6413509	0	+	0.49	(0.476,0.515]	chr16	615465	86	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	4	50	2	2.05714	2.2683150000000003	2.47949	0.0326974	0.0156961	0.145164	0.101453
chr2	32215135	32215234	730287	0	+	0.343434	(0.32,0.35]	chr2	84226	52	INTRON	INTRON	SLC30A6	ENSG00000152683.14	ENST00000357055.7:ENST00000435660.5:ENST00000282587.9:ENST00000449777.5:ENST00000454324.5:ENST00000379343.6:ENST00000406369.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	45	2	2.23182	2.26829	2.30476	0.068598	0.0151817	0.184298	0.108535
chr5	181295322	181295395	2563658	0	+	0.506849	(0.476,0.515]	chr5	245345	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ENSG00000274525	ENSG00000274525.1	ENST00000622195.1	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	22	251	2	1.42535	2.2682149999999996	3.11108	0.0113435	7.00624e-6	0.0950265	0.00198457
chr13	20023895	20023995	5453088	0	+	0.39	(0.378,0.408]	chr13	522478	39	INTRON	INTRON	ZMYM2	ENSG00000121741.17	ENST00000382874.6:ENST00000610343.5:ENST00000382871.3	protein_coding	protein_coding	protein_coding	protein_coding	12	147	2	2.15622	2.268155	2.38009	0.00145972	0.0013108	0.0345816	0.0333932
chr14	30964708	30964808	5857256	0	-	0.46	(0.44,0.476]	chr14	556508	3	INTRON	INTRON	STRN3	ENSG00000196792.12	ENST00000355683.9:ENST00000357479.10:ENST00000555358.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	46	2	1.92837	2.268055	2.60774	0.0255874	0.0222222	0.124303	0.120269
chr2	12315403	12315502	699615	0	+	0.474747	(0.44,0.476]	chr2	81522	6	INTRON	INTRON	MIR3681HG	ENSG00000224184.6	ENST00000412294.5:ENST00000653212.1:ENST00000653433.1:ENST00000664018.1:ENST00000412606.2	lncRNA	lncRNA	lncRNA	lncRNA	4	46	2	1.92837	2.268055	2.60774	0.0255874	0.0222222	0.124303	0.120269
chr9	125271980	125272080	4198357	0	+	0.33	(0.32,0.35]	chr9	383148	26	INTRON	INTRON	GAPVD1	ENSG00000165219.23	ENST00000497580.5:ENST00000461379.5:ENST00000297933.11:ENST00000394084.5:ENST00000469528.5:ENST00000470056.5:ENST00000394105.6:ENST00000394083.6:ENST00000495955.5:ENST00000467750.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	87	2	2.03198	2.268045	2.50411	0.0193728	0.00267989	0.108916	0.0478767
chr15	58597257	58597356	6191969	0	-	0.373737	(0.35,0.378]	chr15	589880	86	UTR3	UTR3:EXON_MRNA	ADAM10	ENSG00000137845.15	ENST00000260408.8:ENST00000402627.5:ENST00000561288.1:ENST00000482945.5:ENST00000396136.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	57	2	1.54563	2.2680350000000002	2.99044	0.046845	0.00894806	0.167716	0.0799922
chr7	130166063	130166160	3638350	0	-	0.278351	[0,0.28]	chr7	338341	15	UTR3	UTR3:EXON_MRNA	TMEM209	ENSG00000146842.17	ENST00000397622.7:ENST00000473456.5:ENST00000462753.5	protein_coding	protein_coding	protein_coding	protein_coding	6	109	2	2.02891	2.2679850000000004	2.50706	0.0236076	0.00338815	0.118716	0.0535583
chr11	9282136	9282235	4909100	0	-	0.50505	(0.476,0.515]	chr11	460125	16	UTR3	UTR3:EXON_MRNA:INTRON	TMEM41B	ENSG00000166471.11	ENST00000524543.5:ENST00000528080.6:ENST00000299596.8:ENST00000611268.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	120	2	2.24352	2.26798	2.29244	0.0019689	0.00195632	0.0411469	0.0400784
chr16	29665030	29665129	6335236	0	+	0.484848	(0.476,0.515]	chr16	606805	2	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	SPN:QPRT	ENSG00000197471.12:ENSG00000103485.19	ENST00000395389.2:ENST00000360121.4:ENST00000652691.1:ENST00000563039.2:ENST00000449759.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	33	355	2	1.84003	2.267945	2.69586	0.00103707	2.38752e-5	0.0292806	0.00383194
chr7	111349379	111349479	3621976	0	-	0.31	(0.28,0.32]	chr7	337093	3855	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	134	2	1.8146	2.267915	2.72123	0.0137925	0.00112621	0.0950154	0.0308424
chr17	59654468	59654567	6641916	0	+	0.535354	(0.515,0.57]	chr17	648550	28	INTRON	INTRON	CLTC	ENSG00000141367.12	ENST00000621829.4:ENST00000393043.5:ENST00000269122.8:ENST00000579456.5:ENST00000472129.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	53	2	1.75372	2.2679	2.78208	0.0386904	0.00209264	0.14279	0.0424943
chr21	46224606	46224704	7470838	0	-	0.530612	(0.515,0.57]	chr21	761544	15	INTRON	INTRON	LSS	ENSG00000160285.15	ENST00000356396.8:ENST00000397728.8:ENST00000457828.6:ENST00000522411.5:ENST00000464357.1:ENST00000450351.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	46	2	1.94945	2.267845	2.58624	0.0414068	0.00526399	0.161557	0.0633874
chr22	21488422	21488521	7559973	0	-	0.313131	(0.28,0.32]	chr22	773311	3	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	PI4KAP2	ENSG00000183506.17	ENST00000450651.5:ENST00000467443.5:ENST00000480319.5:ENST00000479693.1	transcribed_unitary_pseudogene	retained_intron	transcribed_unitary_pseudogene	retained_intron:processed_transcript	11	152	2	1.71643	2.267795	2.81916	0.00963226	0.00117007	0.086971	0.0312141
chr5	53980914	53981014	2617613	0	-	0.46	(0.44,0.476]	chr5	248835	689	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	112	2	1.62573	2.267765	2.9098	0.0146931	4.57573e-4	0.106558	0.0197167
chr22	21581168	21581268	7481839	0	+	0.45	(0.44,0.476]	chr22	763232	124	INTRON	INTRON	UBE2L3	ENSG00000185651.16	ENST00000458578.6:ENST00000545681.2:ENST00000696046.1:ENST00000342192.9:ENST00000496722.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	103	2	1.62554	2.267725	2.90991	0.0212701	3.20441e-4	0.113328	0.0159645
chr8	29056708	29056806	3726540	0	+	0.469388	(0.44,0.476]	chr8	346338	9	EXON_LNCRNA	EXON_LNCRNA:INTRON	HMBOX1:ENSG00000259366	ENSG00000147421.18:ENSG00000259366.2	ENST00000522468.1:ENST00000687917.1:ENST00000687452.1	protein_coding	nonsense_mediated_decay	protein_coding:lncRNA	nonsense_mediated_decay:lncRNA	15	174	2	1.90366	2.2677199999999997	2.63178	0.00347576	1.35702e-4	0.0520789	0.0100405
chr8	129494443	129494543	4060225	0	-	0.32	(0.28,0.32]	chr8	369638	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1:ENST00000676273.1:ENST00000667643.1:ENST00000668791.1:ENST00000663716.1:ENST00000663572.1:ENST00000676148.1:ENST00000667962.1:ENST00000674877.1:ENST00000675316.1:ENST00000674656.1:ENST00000446592.7:ENST00000667341.1:ENST00000675186.1:ENST00000652971.1:ENST00000661447.1:ENST00000674863.1:ENST00000675498.1:ENST00000675527.1:ENST00000676108.1:ENST00000657647.1:ENST00000675589.1:ENST00000675913.1:ENST00000675109.1:ENST00000671632.1:ENST00000671311.1:ENST00000676099.1:ENST00000660652.1:ENST00000675522.1:ENST00000675183.1:ENST00000658861.1:ENST00000663991.1:ENST00000675044.1:ENST00000675435.1:ENST00000674639.1:ENST00000676069.1:ENST00000675532.1:ENST00000674762.1:ENST00000523151.6:ENST00000675948.1:ENST00000665364.1:ENST00000657251.1:ENST00000675166.1:ENST00000674883.1:ENST00000675867.1:ENST00000674580.1:ENST00000675393.1:ENST00000520048.1:ENST00000674906.1:ENST00000676030.1:ENST00000670588.1:ENST00000675072.1:ENST00000664936.1:ENST00000652914.1:ENST00000657069.1	lncRNA	lncRNA	lncRNA	lncRNA	9	140	2	2.10616	2.267545	2.42893	0.00457639	0.00287039	0.0622676	0.0474836
chr12	56643240	56643302	5335785	0	-	0.354839	(0.35,0.378]	chr12	510129	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ATP5F1B	ENSG00000110955.9	ENST00000262030.8:ENST00000548474.2:ENST00000547808.5:ENST00000547250.5:ENST00000551020.5:ENST00000552959.5:ENST00000551570.5:ENST00000553007.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	31	322	2	1.75249	2.26749	2.78249	0.00119616	1.30182e-4	0.0318142	0.0103941
chr16	89890046	89890144	6422606	0	+	0.561224	(0.515,0.57]	chr16	616750	9	UTR3	UTR3:EXON_MRNA:INTRON	TCF25	ENSG00000141002.20	ENST00000640279.1:ENST00000263347.11:ENST00000263346.13:ENST00000561958.5:ENST00000614813.4:ENST00000565196.5:ENST00000564652.5:ENST00000568412.5:ENST00000566751.5:ENST00000562256.5:ENST00000568409.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	64	2	1.91916	2.267485	2.61581	0.0231902	0.00127505	0.118148	0.0331722
chr21	37392493	37392593	7406479	0	+	0.54	(0.515,0.57]	chr21	754850	170	INTRON	INTRON	DYRK1A	ENSG00000157540.22	ENST00000646523.1:ENST00000647425.1:ENST00000647188.2:ENST00000647504.1:ENST00000644942.1:ENST00000338785.8:ENST00000643624.1:ENST00000643551.1:ENST00000426672.6:ENST00000398960.7	protein_coding	protein_coding	protein_coding	protein_coding	6	64	2	1.91916	2.267485	2.61581	0.0231902	0.00127505	0.118148	0.0331722
chr7	129629377	129629477	3412298	0	+	0.53	(0.515,0.57]	chr7	319009	172	INTRON	INTRON	NRF1	ENSG00000106459.15	ENST00000393232.6:ENST00000477428.5:ENST00000454688.5:ENST00000223190.8:ENST00000311967.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	64	2	1.91916	2.267485	2.61581	0.0231902	0.00127505	0.118148	0.0331722
chr8	97697361	97697461	3809596	0	+	0.4	(0.378,0.408]	chr8	352866	58	INTRON	INTRON	MTDH	ENSG00000147649.10	ENST00000336273.8:ENST00000519934.5:ENST00000519293.1:ENST00000521933.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	64	2	2.22859	2.267435	2.30628	0.0163339	0.00763308	0.101571	0.0777238
chr1	114755485	114755583	528613	0	-	0.295918	(0.28,0.32]	chr1	62361	22	INTRON	INTRON	CSDE1	ENSG00000009307.17	ENST00000339438.10:ENST00000610726.5:ENST00000692719.1:ENST00000358528.9:ENST00000688211.1:ENST00000438362.7:ENST00000689217.1:ENST00000689989.1:ENST00000686025.1:ENST00000686781.1:ENST00000686123.1:ENST00000684913.1:ENST00000686235.1:ENST00000693467.1:ENST00000689732.1:ENST00000693644.1:ENST00000687759.1:ENST00000692044.1:ENST00000689885.1:ENST00000691403.1:ENST00000692629.1:ENST00000690013.1:ENST00000690420.1:ENST00000692950.1:ENST00000686667.1:ENST00000691032.1:ENST00000685676.1:ENST00000529046.6:ENST00000692672.1:ENST00000691377.1:ENST00000688611.1:ENST00000690207.1:ENST00000693311.1:ENST00000689510.1:ENST00000686581.1:ENST00000689727.1:ENST00000690784.1:ENST00000483030.2:ENST00000687548.1:ENST00000261443.9:ENST00000530886.5:ENST00000369530.5:ENST00000534699.5:ENST00000524652.2:ENST00000525132.1:ENST00000525878.5:ENST00000525970.5:ENST00000533818.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	59	2	1.56134	2.267335	2.97333	0.0740624	0.00857834	0.191153	0.083729
chr11	112032021	112032119	4865023	0	+	0.530612	(0.515,0.57]	chr11	453913	27	INTRON	INTRON	DLAT	ENSG00000150768.17	ENST00000280346.11:ENST00000679878.1:ENST00000679815.1:ENST00000679614.1:ENST00000533297.1:ENST00000681339.1:ENST00000681328.1:ENST00000681316.1:ENST00000680010.1:ENST00000527231.2:ENST00000679466.1:ENST00000679829.1:ENST00000681638.1:ENST00000679368.1:ENST00000531306.2:ENST00000393051.5:ENST00000680331.1:ENST00000680411.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	50	2	1.38719	2.267245	3.1473	0.0540435	0.00397184	0.181713	0.0549214
chr19	49448991	49449078	7201034	0	-	0.505747	(0.476,0.515]	chr19	730407	1	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	PIH1D1	ENSG00000104872.11	ENST00000262265.10:ENST00000596916.5:ENST00000596651.5:ENST00000600875.5:ENST00000598889.5:ENST00000596049.5:ENST00000601807.5:ENST00000601053.5:ENST00000595516.5:ENST00000599366.5:ENST00000597415.5:ENST00000593900.5:ENST00000595074.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	66	2	1.34326	2.267225	3.19119	0.0529391	0.00325748	0.161923	0.0524329
chr7	135603194	135603294	3428789	0	+	0.5	(0.476,0.515]	chr7	319720	2	SS5_PROX	SS5_PROX:INTRON	NUP205	ENSG00000155561.15	ENST00000285968.11:ENST00000607647.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	58	2	1.48272	2.2671200000000002	3.05152	0.0410274	0.0064848	0.161534	0.0699952
chr17	46137829	46137929	6784314	0	-	0.37	(0.35,0.378]	chr17	669216	166	INTRON	INTRON	KANSL1	ENSG00000120071.15	ENST00000574590.6:ENST00000572904.6:ENST00000432791.7:ENST00000575318.6:ENST00000638275.1:ENST00000262419.10:ENST00000648792.1:ENST00000639531.1:ENST00000639150.1:ENST00000639853.1:ENST00000571698.2:ENST00000639375.1:ENST00000638269.1:ENST00000576248.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	10	123	2	1.63191	2.26709	2.90227	0.0149226	5.81688e-4	0.107378	0.0223753
chr15	68199140	68199240	6213933	0	-	0.42	(0.408,0.44]	chr15	592918	2	SS5_PROX	SS5_PROX:INTRON	ENSG00000260007:CALML4	ENSG00000260007.3:ENSG00000129007.16	ENST00000637888.1:ENST00000467889.3:ENST00000540479.6:ENST00000395465.3:ENST00000562767.2:ENST00000637054.1:ENST00000448060.7:ENST00000395463.3:ENST00000638026.1:ENST00000354678.3:ENST00000646164.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	88	2	1.8865	2.267045	2.64759	0.0148842	0.0016061	0.107116	0.0364977
chr16	89403760	89403860	6542726	0	-	0.46	(0.44,0.476]	chr16	634252	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000647238.1:ENST00000644045.1:ENST00000643147.1:ENST00000644139.1:ENST00000568512.6:ENST00000566973.1:ENST00000562211.2:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	20	233	2	1.92902	2.2670399999999997	2.60506	0.00215551	4.2858e-5	0.0417866	0.00530415
chr17	32378793	32378893	6598283	0	+	0.39	(0.378,0.408]	chr17	641948	55	UTR3	UTR3:EXON_MRNA	ZNF207	ENSG00000010244.19	ENST00000394670.9:ENST00000577908.5:ENST00000581531.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	149	2	1.99288	2.26703	2.54118	0.00540773	2.43236e-4	0.0644789	0.0137655
chr1	37988513	37988602	426525	0	-	0.393258	(0.378,0.408]	chr1	51743	3	INTRON	INTRON	SF3A3	ENSG00000183431.12	ENST00000373019.5:ENST00000489537.5:ENST00000461869.5:ENST00000470585.5:ENST00000462258.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	56	2	1.48005	2.26699	3.05393	0.0596711	0.00551532	0.168954	0.0672816
chr10	21627741	21627841	4405357	0	+	0.34	(0.32,0.35]	chr10	406487	26	INTRON	INTRON	MLLT10	ENSG00000078403.17	ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000651298.1:ENST00000377059.7:ENST00000652258.1:ENST00000651382.1:ENST00000438473.6:ENST00000650921.1:ENST00000651405.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	64	2	2.02327	2.26694	2.51061	0.0364463	0.00956045	0.138959	0.0863913
chr17	32357602	32357702	6598055	0	+	0.46	(0.44,0.476]	chr17	641893	53	INTRON	INTRON	ZNF207	ENSG00000010244.19	ENST00000321233.10:ENST00000394673.6:ENST00000394670.9:ENST00000579634.5:ENST00000580759.5:ENST00000342555.10:ENST00000577908.5:ENST00000394679.9:ENST00000582165.1:ENST00000577324.1:ENST00000578918.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	101	2	1.68545	2.266935	2.84842	0.0322071	1.57183e-4	0.132543	0.0107517
chr16	16535005	16535105	6311212	0	+	0.5	(0.476,0.515]	chr16	604098	350	INTRON	INTRON	ENSG00000260126	ENSG00000260126.2	ENST00000567465.2	lncRNA	lncRNA	lncRNA	lncRNA	6	72	2	1.99699	2.26685	2.53671	0.0110277	0.00624027	0.0873897	0.0718843
chr1	100975457	100975557	175141	0	+	0.28	[0,0.28]	chr1	18985	7	UTR3	UTR3:EXON_MRNA	SLC30A7	ENSG00000162695.12	ENST00000370112.8:ENST00000357650.9	protein_coding	protein_coding	protein_coding	protein_coding	6	104	2	1.71434	2.26682	2.8193	0.0379383	0.00285248	0.141416	0.0494641
chr20	34905816	34905916	7261278	0	+	0.39	(0.378,0.408]	chr20	737651	118	INTRON	INTRON	ACSS2	ENSG00000131069.20	ENST00000481971.5:ENST00000488172.5:ENST00000497927.5:ENST00000481284.5:ENST00000475459.6:ENST00000484354.1:ENST00000480274.1:ENST00000477932.5:ENST00000473172.5:ENST00000493805.6:ENST00000480978.5:ENST00000360596.7:ENST00000467019.5:ENST00000253382.5:ENST00000476922.5:ENST00000464399.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	101	2	2.1245	2.266765	2.40903	0.00724232	0.00165739	0.0729826	0.0376447
chr4	73209490	73209590	2160333	0	-	0.37	(0.35,0.378]	chr4	212794	316	INTRON	INTRON	ANKRD17	ENSG00000132466.20	ENST00000358602.9:ENST00000558247.5:ENST00000330838.10:ENST00000509867.6:ENST00000561029.1:ENST00000559367.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	56	2	1.98929	2.26675	2.54421	0.0417909	0.00630238	0.147075	0.0722266
chr6	154748911	154749011	3001972	0	+	0.46	(0.44,0.476]	chr6	280737	65	INTRON	INTRON	SCAF8	ENSG00000213079.10	ENST00000367186.7:ENST00000417268.3:ENST00000461219.5:ENST00000367178.8:ENST00000464628.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	15	174	2	1.72149	2.266735	2.81198	0.00781871	4.40239e-5	0.0759358	0.00537905
chr9	37267877	37267977	4119136	0	+	0.52	(0.515,0.57]	chr9	375389	810	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000461038.5:ENST00000488607.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	46	2	1.84511	2.2667200000000003	2.68833	0.0184931	0.0167182	0.110511	0.108861
chr1	92834601	92834678	162451	0	+	0.350649	(0.35,0.378]	chr1	17528	3	SS3_PROX	SS3_PROX:INTRON	RPL5	ENSG00000122406.14	ENST00000645300.1:ENST00000370321.8:ENST00000645119.1:ENST00000470843.5:ENST00000646852.1:ENST00000315741.5:ENST00000461952.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	56	2	2.19034	2.26656	2.34278	0.023941	0.0129593	0.119443	0.0991015
chr22	41888088	41888187	7526562	0	+	0.353535	(0.35,0.378]	chr22	769423	14	INTRON	INTRON	SREBF2	ENSG00000198911.12	ENST00000612482.4:ENST00000361204.9:ENST00000424354.5:ENST00000491541.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	42	2	2.24535	2.266525	2.2877	0.0647516	0.0155765	0.179192	0.109411
chr22	20837916	20838015	7559474	0	-	0.494949	(0.476,0.515]	chr22	773209	29	INTRON	INTRON	PI4KA	ENSG00000241973.11	ENST00000255882.11:ENST00000485963.5:ENST00000449120.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	38	2	1.72558	2.266435	2.80729	0.0767648	0.0126008	0.196164	0.0980703
chr3	105769097	105769197	1760112	0	-	0.5	(0.476,0.515]	chr3	178551	63	INTRON	INTRON	CBLB	ENSG00000114423.23	ENST00000645759.1:ENST00000394030.8:ENST00000646499.1:ENST00000645425.1:ENST00000646825.1:ENST00000643322.1:ENST00000403724.5:ENST00000405772.5:ENST00000447441.6:ENST00000643403.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	38	2	1.72558	2.266435	2.80729	0.0767648	0.0126008	0.196164	0.0980703
chr8	38251048	38251144	3735733	0	+	0.5	(0.476,0.515]	chr8	347139	14	EXON_MRNA	EXON_MRNA:INTRON	DDHD2	ENSG00000085788.14	ENST00000397166.7:ENST00000520272.6:ENST00000532106.1:ENST00000528504.5:ENST00000517385.5:ENST00000529845.5:ENST00000520176.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	38	2	1.72558	2.266435	2.80729	0.0767648	0.0126008	0.196164	0.0980703
chr1	21711596	21711696	396129	0	-	0.48	(0.476,0.515]	chr1	47253	43	INTRON	INTRON	USP48	ENSG00000090686.16	ENST00000400301.5:ENST00000308271.14:ENST00000374732.7:ENST00000529637.5	protein_coding	protein_coding	protein_coding	protein_coding	6	74	2	1.97402	2.26643	2.55884	0.0206778	0.00186081	0.110999	0.039946
chr9	129489299	129489399	4209807	0	+	0.49	(0.476,0.515]	chr9	385746	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	LINC00963	ENSG00000204054.14	ENST00000653047.1:ENST00000454968.5:ENST00000652803.1:ENST00000444184.6:ENST00000658785.1:ENST00000656664.1:ENST00000666282.1:ENST00000663727.1:ENST00000663000.1:ENST00000666041.1:ENST00000657306.1:ENST00000668074.1:ENST00000656234.1:ENST00000662331.1:ENST00000654822.1:ENST00000659188.1:ENST00000658175.1:ENST00000654204.1:ENST00000659535.1:ENST00000653700.1:ENST00000667047.1:ENST00000665998.1:ENST00000664811.1:ENST00000665880.1:ENST00000662047.1:ENST00000671609.1:ENST00000608369.2:ENST00000671555.1:ENST00000655787.1:ENST00000419300.3:ENST00000423918.5:ENST00000661101.1:ENST00000666559.1:ENST00000668919.1:ENST00000654131.1:ENST00000653386.1:ENST00000655962.1	lncRNA	lncRNA	lncRNA	lncRNA	8	87	2	1.68084	2.266305	2.85177	0.0172143	0.00169916	0.104099	0.0381936
chr18	26062235	26062335	6959439	0	-	0.32	(0.28,0.32]	chr18	688450	41	INTRON	INTRON	SS18	ENSG00000141380.14	ENST00000415083.7:ENST00000542420.6:ENST00000579640.5:ENST00000269138.9:ENST00000269137.11:ENST00000585121.5:ENST00000539244.6:ENST00000585241.5:ENST00000578954.5:ENST00000579061.5:ENST00000577636.5:ENST00000584083.5:ENST00000578700.5:ENST00000582792.5:ENST00000581021.5:ENST00000577572.5:ENST00000582448.5:ENST00000581570.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	100	2	1.84658	2.2663	2.68602	0.0128582	0.0055712	0.0990564	0.0649112
chr3	3146015	3146115	1349654	0	+	0.37	(0.35,0.378]	chr3	141888	2	SS3_PROX	SS3_PROX:INTRON	TRNT1	ENSG00000072756.17	ENST00000651591.1:ENST00000251607.11:ENST00000651316.1:ENST00000280591.10:ENST00000650755.1:ENST00000650989.1:ENST00000651093.1:ENST00000651352.1:ENST00000434583.5:ENST00000650839.1:ENST00000650814.1:ENST00000652340.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	57	2	1.49446	2.2662999999999998	3.03814	0.054297	0.00767003	0.182243	0.075364
chr16	84660605	84660699	6409825	0	+	0.542553	(0.515,0.57]	chr16	615244	3	INTRON	INTRON	KLHL36	ENSG00000135686.13	ENST00000564996.6:ENST00000258157.9:ENST00000564159.1:ENST00000325279.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	44	2	2.26012	2.2662500000000003	2.27238	0.0161808	0.0160033	0.109464	0.101453
chr2	127305498	127305597	1222969	0	-	0.40404	(0.378,0.408]	chr2	130196	70	UTR3	UTR3:EXON_MRNA	MAP3K2	ENSG00000169967.17	ENST00000682094.1:ENST00000409947.5	protein_coding	protein_coding	protein_coding	protein_coding	6	61	2	1.63086	2.26624	2.90162	0.0252353	0.0113157	0.133676	0.0886121
chr6	157855664	157855764	3016087	0	+	0.38	(0.378,0.408]	chr6	281353	256	INTRON	INTRON	SNX9	ENSG00000130340.17	ENST00000614703.4:ENST00000614800.4:ENST00000680863.1:ENST00000679814.1:ENST00000680464.1:ENST00000681186.1:ENST00000679732.1:ENST00000681183.1:ENST00000681534.1:ENST00000681651.1:ENST00000680089.1:ENST00000680078.1:ENST00000680974.1:ENST00000680095.1:ENST00000680015.1:ENST00000681138.1:ENST00000392185.8:ENST00000679790.1:ENST00000680495.1:ENST00000679691.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	61	2	1.63086	2.26624	2.90162	0.0252353	0.0113157	0.133676	0.0886121
chr9	133253599	133253697	4369806	0	-	0.27551	[0,0.28]	chr9	402031	39	EXON_LNCRNA	EXON_LNCRNA:INTRON	ABO	ENSG00000175164.16	ENST00000679909.1:ENST00000453660.4:ENST00000647353.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	56	2	1.89998	2.26618	2.63238	0.0599553	0.0259691	0.169548	0.133676
chr1	35631943	35632042	422222	0	-	0.454545	(0.44,0.476]	chr1	50867	2	INTRON	INTRON	PSMB2	ENSG00000126067.12	ENST00000373237.4	protein_coding	protein_coding	protein_coding	protein_coding	4	52	2	1.83899	2.26598	2.69297	0.0589734	0.00333494	0.167915	0.0528877
chr1	65431819	65431875	137301	0	+	0.464286	(0.44,0.476]	chr1	15493	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:INTRON	LEPROT:LEPR	ENSG00000213625.9:ENSG00000116678.20	ENST00000475108.5:ENST00000371060.7:ENST00000371059.7:ENST00000349533.11:ENST00000371065.9:ENST00000488747.5:ENST00000613538.1	protein_coding	protein_coding	protein_coding	protein_coding	4	52	2	1.83899	2.26598	2.69297	0.0589734	0.00333494	0.167915	0.0528877
chr6	53328355	53328455	3107983	0	-	0.33	(0.32,0.35]	chr6	291049	323	INTRON	INTRON	ELOVL5	ENSG00000012660.14	ENST00000370918.8:ENST00000542638.5:ENST00000304434.11:ENST00000485336.5:ENST00000465983.5:ENST00000486973.1:ENST00000370913.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	54	2	2.02133	2.26597	2.51061	0.0364463	0.017146	0.138959	0.111072
chr16	88756364	88756464	6539933	0	-	0.59	(0.57,1]	chr16	633998	65	INTRON	INTRON	PIEZO1	ENSG00000103335.22	ENST00000301015.14	protein_coding	protein_coding	protein_coding	protein_coding	4	27	2	2.16779	2.26595	2.36411	0.0408868	0.00900694	0.161534	0.0803518
chr7	100871060	100871118	3365781	0	+	0.586207	(0.57,1]	chr7	315002	1	CDS	CDS:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TRIP6	ENSG00000087077.14	ENST00000200457.9:ENST00000476870.5:ENST00000619988.4:ENST00000429658.1:ENST00000488670.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	27	2	2.16779	2.26595	2.36411	0.0408868	0.00900694	0.161534	0.0803518
chr10	72736184	72736284	4450535	0	+	0.39	(0.378,0.408]	chr10	410755	3	SS3_PROX	SS3_PROX:INTRON	MCU	ENSG00000156026.15	ENST00000373053.8:ENST00000357157.10:ENST00000604679.5:ENST00000604372.5:ENST00000603649.5:ENST00000605597.5:ENST00000536019.5:ENST00000604152.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	48	2	1.99678	2.265905	2.53503	0.0319942	0.0177959	0.13174	0.113452
chr4	152461163	152461263	2274340	0	-	0.56	(0.515,0.57]	chr4	221120	90	INTRON	INTRON	FBXW7	ENSG00000109670.16	ENST00000281708.10:ENST00000603548.6:ENST00000604872.6:ENST00000647166.1:ENST00000643834.1:ENST00000642901.1	protein_coding	protein_coding	protein_coding	protein_coding	5	53	2	2.21273	2.2658750000000003	2.31902	0.0196151	0.00493032	0.109486	0.0646039
chr20	47338356	47338456	7349328	0	-	0.5	(0.476,0.515]	chr20	749346	194	INTRON	INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000435836.5:ENST00000446894.5:ENST00000441977.1	protein_coding	protein_coding	protein_coding	protein_coding	17	199	2	1.89308	2.26586	2.63864	0.00225376	1.29675e-4	0.0436331	0.0103612
chr6	110880614	110880714	2939002	0	+	0.42	(0.408,0.44]	chr6	276765	46	INTRON	INTRON	AMD1	ENSG00000123505.19	ENST00000451850.6:ENST00000675380.1:ENST00000368882.8:ENST00000672937.2:ENST00000368885.8:ENST00000368877.9:ENST00000368876.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	86	2	2.04842	2.26584	2.48326	0.00797555	0.00324772	0.0798772	0.0508595
chr1	65330122	65330222	136296	0	+	0.42	(0.408,0.44]	chr1	15352	198	INTRON	INTRON	DNAJC6	ENSG00000116675.16	ENST00000463018.5:ENST00000494710.6:ENST00000263441.11:ENST00000395325.7:ENST00000483402.1:ENST00000371069.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	63	2	2.08486	2.2658	2.44674	0.0145898	0.00868283	0.0981689	0.0842798
chr20	63907760	63907859	7301085	0	+	0.545455	(0.515,0.57]	chr20	743135	121	INTRON	INTRON	DNAJC5	ENSG00000101152.11	ENST00000360864.9:ENST00000470551.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	73	2	1.76853	2.265765	2.763	0.0102412	0.00257143	0.089002	0.045134
chr2	131236231	131236331	865733	0	+	0.53	(0.515,0.57]	chr2	97225	1	SS3_PROX	SS3_PROX:INTRON	PLEKHB2:POTEE	ENSG00000115762.17:ENSG00000188219.16	ENST00000404460.5:ENST00000683005.1:ENST00000356920.9:ENST00000358087.9:ENST00000514256.5:ENST00000626191.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	54	2	1.56681	2.26574	2.96467	0.064862	8.94279e-4	0.179394	0.0273458
chr1	77629449	77629549	492925	0	-	0.47	(0.44,0.476]	chr1	58292	444	INTRON	INTRON	ZZZ3	ENSG00000036549.13	ENST00000370801.8:ENST00000481346.5:ENST00000476275.5:ENST00000370798.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	74	2	2.03034	2.265695	2.50105	0.0173569	0.00240161	0.104189	0.0452061
chr6	17694903	17695003	3066094	0	-	0.51	(0.476,0.515]	chr6	284872	59	INTRON	INTRON	NUP153	ENSG00000124789.12	ENST00000613258.4:ENST00000537253.5:ENST00000262077.3	protein_coding	protein_coding	protein_coding	protein_coding	6	71	2	1.4553	2.265655	3.07601	0.0623645	5.95211e-4	0.175357	0.0221865
chr19	8474842	8474941	7011076	0	+	0.474747	(0.44,0.476]	chr19	696197	2	INTRON	INTRON	HNRNPM	ENSG00000099783.12	ENST00000348943.7:ENST00000600092.5:ENST00000325495.9:ENST00000600806.5:ENST00000620401.4:ENST00000594907.5:ENST00000597270.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	71	2	2.1923	2.265645	2.33899	0.0142027	0.0043698	0.0959987	0.0604104
chr9	131223130	131223230	4216638	0	+	0.39	(0.378,0.408]	chr9	386684	2	SS5_PROX	SS5_PROX:INTRON	NUP214	ENSG00000126883.19	ENST00000695497.1:ENST00000695498.1:ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000524578.6:ENST00000453861.6:ENST00000483497.6:ENST00000695500.1:ENST00000650694.1:ENST00000695501.1:ENST00000530491.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	101	2	2.1516	2.265645	2.37969	0.0065185	0.00190547	0.0699952	0.0403738
chr1	229265537	229265637	652333	0	-	0.49	(0.476,0.515]	chr1	77229	17	EXON_LNCRNA	EXON_LNCRNA:INTRON	ENSG00000177788	ENSG00000177788.7	ENST00000654028.1:ENST00000653511.1:ENST00000656366.1:ENST00000429227.1:ENST00000660017.1	lncRNA	lncRNA	lncRNA	lncRNA	3	39	2	2.05154	2.265515	2.47949	0.0336015	0.0326974	0.145164	0.134145
chr6	147703072	147703172	2991027	0	+	0.5	(0.476,0.515]	chr6	280167	102	INTRON	INTRON	ENSG00000227681	ENSG00000227681.5	ENST00000427015.1:ENST00000432506.5:ENST00000442094.5:ENST00000434985.1	lncRNA	lncRNA	lncRNA	lncRNA	3	39	2	2.05154	2.265515	2.47949	0.0336015	0.0326974	0.145164	0.134145
chrX	3862449	3862549	7747210	0	-	0.5	(0.476,0.515]	chrX	793110	4	SS5_PROX	SS5_PROX:INTRON	ENSG00000285756	ENSG00000285756.2	ENST00000648217.1:ENST00000650456.1:ENST00000657698.1:ENST00000661656.1:ENST00000661924.1:ENST00000381108.3:ENST00000669719.1:ENST00000655273.1:ENST00000456563.1:ENST00000650538.1	lncRNA	lncRNA	lncRNA	lncRNA	3	39	2	2.05154	2.265515	2.47949	0.0336015	0.0326974	0.145164	0.134145
chrX	24213068	24213168	7631648	0	+	0.48	(0.476,0.515]	chrX	781587	18	UTR3	UTR3:EXON_MRNA	ZFX	ENSG00000005889.16	ENST00000539115.5:ENST00000379188.7:ENST00000304543.10:ENST00000379177.5	protein_coding	protein_coding	protein_coding	protein_coding	3	39	2	2.05154	2.265515	2.47949	0.0336015	0.0326974	0.145164	0.134145
chrX	136912545	136912644	7727491	0	+	0.484848	(0.476,0.515]	chrX	790754	24	INTRON	INTRON	TM9SF5P	ENSG00000234062.9	ENST00000650669.2:ENST00000687469.1:ENST00000431464.6:ENST00000685550.1:ENST00000685929.1:ENST00000424306.5:ENST00000687978.1:ENST00000688713.1:ENST00000693626.1:ENST00000686432.1:ENST00000693698.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	3	39	2	2.05154	2.265515	2.47949	0.0336015	0.0326974	0.145164	0.134145
chr3	10002216	10002316	1362124	0	+	0.21	[0,0.28]	chr3	143403	1	SS3_PROX	SS3_PROX:INTRON	EMC3-AS1	ENSG00000180385.9	ENST00000692142.1:ENST00000366264.6:ENST00000693066.1:ENST00000326237.3:ENST00000440568.1:ENST00000424904.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	5	78	2	1.43498	2.265425	3.09587	0.0775714	0.00651565	0.196285	0.0735232
chr4	73212586	73212686	2160364	0	-	0.28	[0,0.28]	chr4	212794	347	INTRON	INTRON	ANKRD17	ENSG00000132466.20	ENST00000358602.9:ENST00000558247.5:ENST00000330838.10:ENST00000509867.6:ENST00000561029.1:ENST00000559367.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	55	2	1.84147	2.265325	2.68918	0.0610416	0.0275571	0.193277	0.123904
chr4	6675162	6675260	1921503	0	+	0.367347	(0.35,0.378]	chr4	192960	7	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ENSG00000170846	ENSG00000170846.17	ENST00000645429.1:ENST00000307533.10:ENST00000635031.1:ENST00000444232.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	100	2	1.68908	2.2653	2.84152	0.0301354	7.71833e-4	0.142482	0.0255501
chr6	17979867	17979967	3068476	0	-	0.36	(0.35,0.378]	chr6	285105	281	INTRON	INTRON	KIF13A	ENSG00000137177.20	ENST00000378814.9:ENST00000259711.11:ENST00000378826.6:ENST00000378843.6:ENST00000636847.1:ENST00000507576.1:ENST00000505588.1:ENST00000502704.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	81	2	2.03027	2.265285	2.5003	0.0185322	0.00256148	0.108861	0.0466761
chr15	80068292	80068391	6071119	0	+	0.353535	(0.35,0.378]	chr15	578304	72	INTRON	INTRON	ZFAND6	ENSG00000086666.19	ENST00000613266.4:ENST00000561060.5:ENST00000559157.5:ENST00000261749.11:ENST00000561012.5:ENST00000564367.5:ENST00000558494.5:ENST00000618205.4:ENST00000560470.5	protein_coding	protein_coding	protein_coding	protein_coding	6	81	2	2.13524	2.265215	2.39519	0.0130865	0.00401951	0.0934394	0.0578189
chr12	68636643	68636743	5161464	0	+	0.51	(0.476,0.515]	chr12	488585	114	INTRON	INTRON	RAP1B	ENSG00000127314.18	ENST00000460800.5:ENST00000393436.9:ENST00000250559.14:ENST00000425247.6:ENST00000501412.2:ENST00000450214.6:ENST00000463493.5:ENST00000537460.5:ENST00000341355.9:ENST00000538283.5:ENST00000541167.5:ENST00000422358.6:ENST00000489473.6:ENST00000545270.5:ENST00000538980.5:ENST00000543393.5:ENST00000542018.5:ENST00000540209.5:ENST00000378985.7:ENST00000453560.6:ENST00000534899.5:ENST00000542145.5:ENST00000539091.5:ENST00000535492.5:ENST00000540781.5:ENST00000485252.6:ENST00000538877.5:ENST00000541386.5:ENST00000543697.5:ENST00000545720.6:ENST00000541216.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	71	2	2.21313	2.2651950000000003	2.31726	0.015077	0.00401502	0.0994339	0.0578059
chr5	32166852	32166952	2597441	0	-	0.34	(0.32,0.35]	chr5	246744	226	INTRON	INTRON	GOLPH3	ENSG00000113384.14	ENST00000265070.7:ENST00000503610.5:ENST00000512668.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	45	2	1.88909	2.26519	2.64129	0.0553737	0.0222819	0.165463	0.124303
chr19	5650577	5650677	7005582	0	+	0.49	(0.476,0.515]	chr19	694989	2	SS3_PROX	SS3_PROX:INTRON	SAFB	ENSG00000160633.13	ENST00000589863.5:ENST00000588852.2:ENST00000292123.9:ENST00000592224.5:ENST00000586934.5:ENST00000454510.5:ENST00000592707.5:ENST00000592396.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	46	2	1.58335	2.265135	2.94692	0.0640461	0.00794331	0.177882	0.0797304
chr5	138347453	138347552	2494827	0	+	0.414141	(0.408,0.44]	chr5	238465	6	UTR3	UTR3:EXON_MRNA	FAM53C	ENSG00000120709.11	ENST00000239906.10	protein_coding	protein_coding	protein_coding	protein_coding	11	128	2	1.59462	2.265005	2.93539	0.0191739	9.4061e-5	0.108861	0.00813008
chr12	123750552	123750644	5244481	0	+	0.358696	(0.35,0.378]	chr12	498632	7	UTR5	UTR5:EXON_MRNA:SS3_PROX:INTRON	ATP6V0A2	ENSG00000185344.15	ENST00000330342.8:ENST00000675344.1:ENST00000540368.6:ENST00000674794.1:ENST00000675260.1:ENST00000534943.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	50	2	1.58862	2.264865	2.94111	0.0615516	0.0104563	0.193423	0.0855102
chr2	169586491	169586590	906491	0	+	0.353535	(0.35,0.378]	chr2	100017	12	INTRON	INTRON	PPIG	ENSG00000138398.17	ENST00000678088.1:ENST00000677392.1:ENST00000433207.6:ENST00000679324.1:ENST00000414307.6:ENST00000676508.1:ENST00000260970.8:ENST00000678695.1:ENST00000409714.7:ENST00000530152.5:ENST00000677750.1:ENST00000676557.1:ENST00000678721.1:ENST00000462903.6:ENST00000676756.1:ENST00000679107.1:ENST00000678499.1:ENST00000678638.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	50	2	1.58862	2.264865	2.94111	0.0615516	0.0104563	0.193423	0.0855102
chr1	12325367	12325466	29217	0	+	0.474747	(0.44,0.476]	chr1	3568	12	INTRON	INTRON	VPS13D	ENSG00000048707.15	ENST00000620676.6:ENST00000613099.4:ENST00000011700.10:ENST00000646917.1:ENST00000460333.5:ENST00000487188.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	78	2	1.78423	2.264845	2.74546	0.0143065	0.00326603	0.104058	0.0508595
chr18	2685103	2685203	6865159	0	+	0.52	(0.515,0.57]	chr18	679964	106	INTRON	INTRON	SMCHD1	ENSG00000101596.17	ENST00000320876.11:ENST00000688342.1:ENST00000684915.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	14	129	2	1.95742	2.2648200000000003	2.57222	0.00136168	7.54337e-4	0.0339121	0.0251179
chr3	198169967	198170059	1599855	0	+	0.347826	(0.32,0.35]	chr3	165855	3	EXON_LNCRNA	EXON_LNCRNA:INTRON	FAM157A	ENSG00000236438.7	ENST00000437428.3:ENST00000634862.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	5	61	2	1.45026	2.264805	3.07935	0.0622478	0.00724137	0.194723	0.0729826
chr19	49159043	49159140	7089044	0	+	0.618557	(0.57,1]	chr19	709754	9	UTR3	UTR3:EXON_MRNA:INTRON	TRPM4	ENSG00000130529.16	ENST00000598691.5:ENST00000598697.5:ENST00000252826.10:ENST00000595519.5:ENST00000599628.5:ENST00000427978.6:ENST00000598502.5:ENST00000596338.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	73	2	2.16585	2.2647899999999996	2.36373	0.00139717	4.42392e-4	0.0340865	0.0190346
chr1	160259986	160260086	571586	0	-	0.3	(0.28,0.32]	chr1	69176	156	INTRON	INTRON	DCAF8	ENSG00000132716.19	ENST00000326837.6:ENST00000368073.7:ENST00000368074.6:ENST00000461888.5:ENST00000475733.5:ENST00000610139.5:ENST00000447377.5:ENST00000495887.1:ENST00000440682.5:ENST00000407642.6:ENST00000419626.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	48	2	1.90263	2.264745	2.62686	0.0503272	0.0289217	0.17488	0.1274
chr20	3974231	3974331	7308993	0	-	0.3	(0.28,0.32]	chr20	744295	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	RNF24	ENSG00000101236.17	ENST00000336095.10:ENST00000358395.11:ENST00000432261.6:ENST00000545616.2	protein_coding	protein_coding	protein_coding	protein_coding	3	48	2	1.90263	2.264745	2.62686	0.0503272	0.0289217	0.17488	0.1274
chr7	152283810	152283910	3679760	0	-	0.3	(0.28,0.32]	chr7	341617	96	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000684262.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	48	2	1.90263	2.264745	2.62686	0.0503272	0.0289217	0.17488	0.1274
chr3	185917615	185917714	1886385	0	-	0.383838	(0.378,0.408]	chr3	188595	32	UTR3	UTR3:EXON_MRNA	TRA2B	ENSG00000136527.19	ENST00000453386.7:ENST00000492417.5:ENST00000463328.5:ENST00000259043.11:ENST00000414862.5:ENST00000487615.5:ENST00000466832.5:ENST00000456380.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	136	2	2.20258	2.2647250000000003	2.32687	0.00323986	8.01098e-4	0.0507788	0.0258804
chr2	32454454	32454553	731776	0	+	0.272727	[0,0.28]	chr2	84399	1	INTRON	INTRON	BIRC6	ENSG00000115760.15	ENST00000421745.7:ENST00000648282.1	protein_coding	protein_coding	protein_coding	protein_coding	4	75	2	2.24053	2.26469	2.28885	0.0256186	0.0181093	0.120376	0.114853
chr19	18843879	18843979	7033439	0	+	0.54	(0.515,0.57]	chr19	700970	102	INTRON	INTRON	UPF1	ENSG00000005007.13	ENST00000262803.10:ENST00000599848.5:ENST00000601981.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	33	2	2.1885	2.264685	2.34087	0.0469761	0.0202537	0.151917	0.121364
chr2	39102942	39103042	1102157	0	-	0.25	[0,0.28]	chr2	118304	46	INTRON	INTRON	SOS1	ENSG00000115904.15	ENST00000692089.1:ENST00000402219.8:ENST00000690876.1:ENST00000395038.6:ENST00000691229.1:ENST00000689668.1:ENST00000690679.1:ENST00000461545.2:ENST00000451331.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	66	2	1.66929	2.264685	2.86008	0.0537506	0.0177015	0.180803	0.105304
chr11	85992674	85992773	5014058	0	-	0.30303	(0.28,0.32]	chr11	472947	19	INTRON	INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000630913.2:ENST00000529760.5:ENST00000528398.5:ENST00000356360.9:ENST00000529016.5:ENST00000526961.5:ENST00000530542.1	protein_coding	protein_coding	protein_coding	protein_coding	4	58	2	1.90249	2.264675	2.62686	0.0289217	0.0261803	0.133676	0.1274
chr6	169713237	169713337	3267229	0	-	0.33	(0.32,0.35]	chr6	303289	3	INTRON	INTRON	PHF10	ENSG00000130024.15	ENST00000339209.9:ENST00000366780.8:ENST00000621772.4:ENST00000480008.1:ENST00000612128.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	46	2	2.04237	2.26465	2.48693	0.0375542	0.0338094	0.146709	0.140222
chr19	53083729	53083828	7210366	0	-	0.434343	(0.408,0.44]	chr19	731876	60	INTRON	INTRON	ZNF160	ENSG00000170949.18	ENST00000599056.5:ENST00000418871.5:ENST00000429604.5:ENST00000683776.1:ENST00000599247.5:ENST00000601982.5:ENST00000355147.9:ENST00000599729.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	53	2	2.07919	2.2646100000000002	2.45003	0.0291499	0.00990006	0.14147	0.0838372
chr19	49806758	49806847	7091262	0	+	0.685393	(0.57,1]	chr19	710421	1	UTR3	UTR3:EXON_MRNA	AP2A1	ENSG00000196961.13	ENST00000354293.10:ENST00000359032.9:ENST00000597774.5:ENST00000601356.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	44	2	1.94024	2.26461	2.58898	0.0116325	0.00134929	0.0889284	0.0338207
chr7	157182107	157182180	3454378	0	+	0.39726	(0.378,0.408]	chr7	322937	1	CDS	CDS:EXON_MRNA	UBE3C	ENSG00000009335.18	ENST00000611269.4:ENST00000348165.10:ENST00000389103.4	protein_coding	protein_coding	protein_coding	protein_coding	18	187	2	1.03126	2.264595	3.49793	0.0658892	2.58301e-6	0.181657	0.00102358
chr15	55258022	55258121	6180584	0	-	0.434343	(0.408,0.44]	chr15	589154	91	INTRON	INTRON	RAB27A	ENSG00000069974.16	ENST00000336787.6:ENST00000396307.6:ENST00000564609.5:ENST00000569493.5:ENST00000567380.5:ENST00000565972.5:ENST00000563262.5:ENST00000568803.1:ENST00000567639.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	46	2	1.8749	2.26455	2.6542	0.0264246	0.0227514	0.133676	0.117618
chr19	8014056	8014156	7010291	0	+	0.52	(0.515,0.57]	chr19	696049	49	INTRON	INTRON	ENSG00000267939	ENSG00000267939.1	ENST00000599756.1	lncRNA	lncRNA	lncRNA	lncRNA	3	33	2	1.8707	2.26452	2.65834	0.0523213	0.0187418	0.160182	0.117523
chr5	80643399	80643498	2661787	0	-	0.525253	(0.515,0.57]	chr5	252251	50	INTRON	INTRON	DHFR	ENSG00000228716.7	ENST00000439211.7:ENST00000505337.5:ENST00000511032.5:ENST00000504396.1:ENST00000513048.5:ENST00000508282.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	33	2	1.8707	2.26452	2.65834	0.0523213	0.0187418	0.160182	0.117523
chr5	90475718	90475817	2419683	0	+	0.545455	(0.515,0.57]	chr5	232706	3	INTRON	INTRON	POLR3G	ENSG00000113356.13	ENST00000512239.1:ENST00000505345.5:ENST00000503373.5:ENST00000651687.1:ENST00000399107.6:ENST00000504930.5:ENST00000514483.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	33	2	1.8707	2.26452	2.65834	0.0523213	0.0187418	0.160182	0.117523
chr10	119079528	119079627	4704914	0	-	0.40404	(0.378,0.408]	chr10	434016	52	INTRON	INTRON	EIF3A	ENSG00000107581.13	ENST00000369144.8:ENST00000541549.2	protein_coding	protein_coding	protein_coding	protein_coding	6	80	2	2.04622	2.2645150000000003	2.48281	0.0149927	0.00340454	0.107704	0.0517761
chr3	87858609	87858709	1455671	0	+	0.26	[0,0.28]	chr3	153149	361	INTRON	INTRON	HTR1F	ENSG00000179097.7	ENST00000319595.7	protein_coding	protein_coding	protein_coding	protein_coding	5	92	2	1.88025	2.26451	2.64877	0.029906	0.00757778	0.142135	0.0749063
chr4	94491567	94491667	1998781	0	+	0.4	(0.378,0.408]	chr4	199554	21	INTRON	INTRON	PDLIM5	ENSG00000163110.15	ENST00000437932.5:ENST00000615540.4:ENST00000318007.9:ENST00000380180.7:ENST00000514830.5:ENST00000509333.5:ENST00000503974.5:ENST00000317968.9:ENST00000627587.2:ENST00000542407.5:ENST00000514743.5:ENST00000508216.5:ENST00000511767.3:ENST00000510099.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	49	2	2.14029	2.2645099999999996	2.38873	0.0458857	0.0106742	0.149888	0.0917199
chr22	19832258	19832358	7555402	0	-	0.5	(0.476,0.515]	chr22	772443	105	INTRON	INTRON	GNB1L	ENSG00000185838.14	ENST00000329517.11:ENST00000403325.5:ENST00000405009.5:ENST00000460402.5:ENST00000481086.1:ENST00000453108.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	38	2	1.79693	2.26449	2.73205	0.0649782	0.0159328	0.179417	0.109464
chr6	85573266	85573364	3150734	0	-	0.510204	(0.476,0.515]	chr6	293829	5	INTRON	INTRON	ENSG00000271793:SNX14	ENSG00000271793.2:ENSG00000135317.14	ENST00000682083.1:ENST00000683074.1:ENST00000681965.1:ENST00000682171.1:ENST00000684150.1:ENST00000683785.1:ENST00000682497.1:ENST00000684647.1:ENST00000683643.1:ENST00000682023.1:ENST00000682022.1:ENST00000683542.1:ENST00000683126.1:ENST00000683857.1:ENST00000683898.1:ENST00000682854.1:ENST00000682491.1:ENST00000682174.1:ENST00000684239.1:ENST00000682939.1:ENST00000684570.1:ENST00000682057.1:ENST00000682878.1:ENST00000683880.1:ENST00000684422.1:ENST00000682504.1:ENST00000683726.1:ENST00000684680.1:ENST00000683196.1:ENST00000683458.1:ENST00000683803.1:ENST00000684281.1:ENST00000682991.1:ENST00000683754.1:ENST00000683481.1:ENST00000682455.1:ENST00000682034.1:ENST00000684451.1:ENST00000683583.1:ENST00000682776.1:ENST00000683873.1:ENST00000683878.1:ENST00000683195.1:ENST00000682995.1:ENST00000682374.1:ENST00000683698.1:ENST00000682454.1:ENST00000682694.1:ENST00000682412.1:ENST00000682682.1:ENST00000346348.7:ENST00000314673.8:ENST00000682633.1:ENST00000683085.1:ENST00000682688.1:ENST00000684319.1:ENST00000683577.1:ENST00000682709.1:ENST00000684299.1:ENST00000682133.1:ENST00000682594.1:ENST00000683473.1:ENST00000682106.1:ENST00000683364.1:ENST00000683436.1:ENST00000684220.1:ENST00000683909.1:ENST00000684118.1:ENST00000681981.1:ENST00000682738.1:ENST00000509338.6:ENST00000684717.1:ENST00000682660.1:ENST00000683073.1:ENST00000515216.6:ENST00000684581.1:ENST00000683479.1:ENST00000682464.1:ENST00000684108.1:ENST00000682514.1:ENST00000684017.1:ENST00000684273.1:ENST00000513865.5:ENST00000505648.5:ENST00000508980.5:ENST00000369627.6:ENST00000508658.6:ENST00000683097.1:ENST00000683541.1:ENST00000683759.1:ENST00000369635.7:ENST00000684462.1:ENST00000682168.1:ENST00000513869.2:ENST00000514419.6:ENST00000683999.1:ENST00000503906.1:ENST00000683727.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	38	2	1.79693	2.26449	2.73205	0.0649782	0.0159328	0.179417	0.109464
chr9	91851275	91851374	4284275	0	-	0.50505	(0.476,0.515]	chr9	393909	751	INTRON	INTRON	ROR2	ENSG00000169071.15	ENST00000375715.5:ENST00000375708.4:ENST00000550066.5:ENST00000495386.5:ENST00000546883.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	38	2	1.79693	2.26449	2.73205	0.0649782	0.0159328	0.179417	0.109464
chr19	5939127	5939227	7125209	0	-	0.39	(0.378,0.408]	chr19	717348	29	INTRON	INTRON	RANBP3	ENSG00000031823.14	ENST00000340578.10:ENST00000439268.6:ENST00000592771.5:ENST00000591092.5:ENST00000034275.12:ENST00000587479.2:ENST00000592621.5:ENST00000590623.5:ENST00000591736.5:ENST00000590953.5:ENST00000588879.5:ENST00000587159.5:ENST00000586117.5:ENST00000589353.5:ENST00000587463.5:ENST00000588010.5:ENST00000591124.5:ENST00000585339.5:ENST00000592133.5:ENST00000591881.5:ENST00000589886.5:ENST00000587263.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	74	2	1.76	2.264465	2.76893	0.023484	0.00316735	0.128531	0.0503085
chr19	11104358	11104448	7016966	0	+	0.3	(0.28,0.32]	chr19	697433	2	INTRON	INTRON	LDLR	ENSG00000130164.14	ENST00000557933.5:ENST00000558518.6:ENST00000545707.5:ENST00000535915.5:ENST00000455727.6:ENST00000558013.5:ENST00000252444.9	protein_coding	protein_coding	protein_coding	protein_coding	4	68	2	2.0243	2.26446	2.50462	0.0364967	0.0102735	0.153759	0.0850389
chr3	140958962	140959062	1523123	0	+	0.42	(0.408,0.44]	chr3	158659	1	SS3_PROX	SS3_PROX:INTRON	SLC25A36	ENSG00000114120.14	ENST00000446041.6:ENST00000324194.12:ENST00000648615.1:ENST00000393015.8:ENST00000515813.1:ENST00000507429.5:ENST00000502594.5:ENST00000453248.6:ENST00000631654.1:ENST00000513887.5:ENST00000512023.5:ENST00000512506.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	52	2	1.88062	2.264455	2.64829	0.0534548	0.00400062	0.162935	0.057767
chr15	89245094	89245194	6095737	0	+	0.36	(0.35,0.378]	chr15	580064	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	FANCI	ENSG00000140525.20	ENST00000674831.1:ENST00000300027.12:ENST00000568670.5:ENST00000567891.5:ENST00000310775.12:ENST00000696717.1:ENST00000676003.1:ENST00000565255.5:ENST00000564920.5:ENST00000696718.1:ENST00000447611.6:ENST00000570110.1:ENST00000696719.1:ENST00000567996.5:ENST00000563250.5:ENST00000565522.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	43	2	2.04224	2.264405	2.48657	0.0363073	0.032907	0.145164	0.138959
chr20	63283602	63283676	7299749	0	+	0.635135	(0.57,1]	chr20	742794	2	SS3_PROX	SS3_PROX:INTRON	ARFGAP1	ENSG00000101199.13	ENST00000519273.6:ENST00000519604.5:ENST00000547204.5:ENST00000549047.5:ENST00000370283.9:ENST00000523460.5:ENST00000520485.5:ENST00000370275.8:ENST00000518601.6:ENST00000353546.7:ENST00000522403.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	17	101	2	2.24315	2.26437	2.28559	5.5282e-4	1.24083e-4	0.021632	0.00952291
chr9	136889434	136889534	4222211	0	+	0.48	(0.476,0.515]	chr9	387782	25	INTRON	INTRON	TRAF2	ENSG00000127191.18	ENST00000419057.5:ENST00000429509.5:ENST00000247668.7	protein_coding	protein_coding	protein_coding	protein_coding	4	51	2	1.99197	2.26434	2.53671	0.039572	0.00624027	0.143072	0.0718843
chr5	138013040	138013139	2730599	0	-	0.515152	(0.476,0.515]	chr5	256991	7	INTRON	INTRON	FAM13B	ENSG00000031003.11	ENST00000689681.1:ENST00000033079.7:ENST00000425075.6:ENST00000420893.6:ENST00000514310.5	protein_coding	protein_coding	protein_coding	protein_coding	4	46	2	1.96833	2.26433	2.56033	0.0287634	0.0195007	0.127066	0.119967
chr1	212292666	212292766	308145	0	+	0.44	(0.408,0.44]	chr1	35547	60	INTRON	INTRON	PPP2R5A	ENSG00000066027.12	ENST00000261461.7	protein_coding	protein_coding	protein_coding	protein_coding	4	46	2	1.6306	2.264275	2.89795	0.0544158	0.0110735	0.182272	0.0873897
chr10	17444366	17444466	4568916	0	-	0.42	(0.408,0.44]	chr10	421387	534	INTRON	INTRON	ST8SIA6	ENSG00000148488.17	ENST00000377602.5:ENST00000648997.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	46	2	1.6306	2.264275	2.89795	0.0544158	0.0110735	0.182272	0.0873897
chr5	138176869	138176967	2731418	0	-	0.438776	(0.408,0.44]	chr5	257187	37	INTRON	INTRON	BRD8	ENSG00000112983.18	ENST00000254900.10:ENST00000402931.5:ENST00000230901.9:ENST00000454473.5:ENST00000418329.5:ENST00000441656.5:ENST00000411594.6:ENST00000512140.5:ENST00000428808.5:ENST00000432618.5:ENST00000425764.5:ENST00000450756.5:ENST00000515254.1:ENST00000430331.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	46	2	1.6306	2.264275	2.89795	0.0544158	0.0110735	0.182272	0.0873897
chr5	54037507	54037607	2618179	0	-	0.34	(0.32,0.35]	chr5	248835	1255	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	115	2	2.24224	2.2642249999999997	2.28621	0.0044232	0.00393422	0.0588897	0.0572563
chr1	17428905	17429005	384878	0	-	0.45	(0.44,0.476]	chr1	45488	4	SS5_PROX	SS5_PROX:INTRON	RCC2	ENSG00000179051.14	ENST00000375436.9:ENST00000375433.3	protein_coding	protein_coding	protein_coding	protein_coding	6	58	2	1.35267	2.264195	3.17572	0.060678	0.00427037	0.192323	0.0573912
chr12	56668318	56668415	5335875	0	-	0.340206	(0.32,0.35]	chr12	510168	17	INTRON	INTRON	PTGES3	ENSG00000110958.16	ENST00000537473.2:ENST00000614328.4:ENST00000262033.11:ENST00000414274.7:ENST00000436399.6:ENST00000448157.6:ENST00000456859.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	44	2	2.01768	2.264145	2.51061	0.0364463	0.0361337	0.152563	0.138959
chr10	49957387	49957484	4432784	0	+	0.43299	(0.408,0.44]	chr10	408693	20	INTRON	INTRON	TIMM23B:TIMM23B-AGAP6	ENSG00000204152.14:ENSG00000178440.8	ENST00000478381.5:ENST00000651259.3:ENST00000651763.1:ENST00000651208.1:ENST00000652716.1:ENST00000483296.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	73	2	1.97721	2.26412	2.55103	0.0121661	0.00587353	0.0910127	0.0690758
chr8	11863277	11863376	3908812	0	-	0.515152	(0.476,0.515]	chr8	358216	4	INTRON	INTRON	CTSB	ENSG00000164733.22	ENST00000677671.1:ENST00000678092.1:ENST00000679128.1:ENST00000677873.1:ENST00000676691.1:ENST00000678598.1:ENST00000353047.11:ENST00000677650.1:ENST00000526481.7:ENST00000676825.1:ENST00000678242.1:ENST00000677366.1:ENST00000677544.1:ENST00000530640.7:ENST00000677418.1:ENST00000677047.1:ENST00000676502.1:ENST00000531089.6:ENST00000678629.1:ENST00000678145.1:ENST00000678929.1:ENST00000677819.1:ENST00000677415.1:ENST00000678357.1:ENST00000676755.1:ENST00000679051.1:ENST00000453527.7:ENST00000678067.1:ENST00000679140.1:ENST00000677082.1:ENST00000533455.6:ENST00000531551.5:ENST00000534382.6:ENST00000679214.1:ENST00000531502.6:ENST00000534510.6:ENST00000677865.1:ENST00000533572.6:ENST00000345125.8:ENST00000526645.6:ENST00000534149.6:ENST00000505496.7:ENST00000532392.2:ENST00000676843.1:ENST00000524500.6:ENST00000525076.6:ENST00000527215.7:ENST00000528965.2:ENST00000532656.7:ENST00000526195.6:ENST00000678615.1:ENST00000527243.6:ENST00000530296.6:ENST00000534636.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	51	2	2.26034	2.264115	2.26789	0.0176567	0.0166235	0.110511	0.105233
chr1	246899700	246899788	681631	0	-	0.318182	(0.28,0.32]	chr1	79992	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	AHCTF1	ENSG00000153207.16	ENST00000648844.2:ENST00000326225.3:ENST00000366508.5	protein_coding	protein_coding	protein_coding	protein_coding	5	67	2	1.79739	2.26408	2.73077	0.0224995	0.0220748	0.124921	0.115395
chr3	37282772	37282869	1396152	0	+	0.412371	(0.408,0.44]	chr3	146339	1	INTRON	INTRON	GOLGA4	ENSG00000144674.17	ENST00000435830.6:ENST00000444882.5:ENST00000356847.8:ENST00000450863.6:ENST00000361924.7:ENST00000429018.5:ENST00000419177.3:ENST00000437131.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	62	2	1.87977	2.26403	2.64829	0.0282738	0.00400062	0.125825	0.057767
chr5	43300573	43300673	2614305	0	-	0.45	(0.44,0.476]	chr5	248522	12	INTRON	INTRON	HMGCS1	ENSG00000112972.15	ENST00000325110.11:ENST00000433297.2:ENST00000507004.1:ENST00000507293.1:ENST00000511774.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	71	2	1.47433	2.26403	3.05373	0.0595438	6.56725e-4	0.16883600000000001	0.0232396
chr12	110403126	110403226	5409193	0	-	0.53	(0.515,0.57]	chr12	516464	2	SS5_PROX	SS5_PROX:INTRON	ANAPC7:ENSG00000258210	ENSG00000196510.14:ENSG00000258210.1	ENST00000455511.9:ENST00000450008.3:ENST00000552170.2:ENST00000550231.1:ENST00000464697.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay	13	128	2	1.92316	2.264005	2.60485	0.00318225	2.42252e-4	0.0504419	0.0137115
chr2	177217040	177217122	925962	0	+	0.402439	(0.378,0.408]	chr2	101751	1	SS5_PROX	SS5_PROX:INTRON	HNRNPA3	ENSG00000170144.21	ENST00000392524.6:ENST00000679159.1:ENST00000678111.1:ENST00000678421.1:ENST00000677863.1:ENST00000676681.1:ENST00000676629.1:ENST00000677337.1:ENST00000676488.1:ENST00000677043.1:ENST00000676874.1:ENST00000676762.1:ENST00000411529.6:ENST00000676736.1:ENST00000483137.2:ENST00000677508.1:ENST00000435711.5:ENST00000679328.1:ENST00000432457.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	80	2	2.22997	2.263975	2.29798	0.0147606	0.00477089	0.106702	0.0602209
chr1	52415486	52415586	103819	0	+	0.34	(0.32,0.35]	chr1	13624	1	SS5_PROX	SS5_PROX:INTRON	PRPF38A	ENSG00000134748.13	ENST00000257181.10:ENST00000474048.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	92	2	1.99685	2.26396	2.53107	0.00860484	0.00667915	0.0784134	0.0738715
chr12	106967401	106967501	5218629	0	+	0.46	(0.44,0.476]	chr12	493954	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	TMEM263	ENSG00000151135.10	ENST00000548125.5:ENST00000547242.5:ENST00000551489.5:ENST00000550344.5:ENST00000280756.9:ENST00000547081.1:ENST00000551813.1	protein_coding	protein_coding	protein_coding	protein_coding	3	38	2	2.14573	2.26396	2.38219	0.045456	0.0238593	0.149888	0.129075
chr2	134925973	134926072	872309	0	+	0.454545	(0.44,0.476]	chr2	97663	57	INTRON	INTRON	CCNT2	ENSG00000082258.13	ENST00000419781.5:ENST00000446247.5:ENST00000264157.10:ENST00000452839.5:ENST00000295238.10:ENST00000475094.1:ENST00000417175.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	38	2	2.14573	2.26396	2.38219	0.045456	0.0238593	0.149888	0.129075
chr5	881960	882058	2564513	0	-	0.469388	(0.44,0.476]	chr5	245484	9	EXON_MRNA	EXON_MRNA:INTRON	BRD9	ENSG00000028310.18	ENST00000467963.6:ENST00000495265.5:ENST00000490814.6:ENST00000495794.5:ENST00000489816.5:ENST00000483173.5:ENST00000475706.5:ENST00000466684.5:ENST00000519838.5:ENST00000494422.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	38	2	2.14573	2.26396	2.38219	0.045456	0.0238593	0.149888	0.129075
chr4	110097222	110097321	2226719	0	-	0.474747	(0.44,0.476]	chr4	218018	37	INTRON	INTRON	ELOVL6	ENSG00000170522.10	ENST00000394607.7:ENST00000302274.8:ENST00000514184.5:ENST00000506625.5:ENST00000506461.1:ENST00000503885.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	51	2	2.13779	2.26391	2.39003	0.0264596	0.0106488	0.122506	0.0915714
chr16	8108422	8108522	6441593	0	-	0.52	(0.515,0.57]	chr16	620351	1008	INTRON	INTRON	ENSG00000260289	ENSG00000260289.2	ENST00000670665.1:ENST00000654046.1:ENST00000567103.2	lncRNA	lncRNA	lncRNA	lncRNA	11	114	2	2.18697	2.2639050000000003	2.34084	0.00232379	7.6302e-4	0.0442989	0.0253264
chr1	174268327	174268427	258204	0	+	0.47	(0.44,0.476]	chr1	30773	154	INTRON	INTRON	RABGAP1L	ENSG00000152061.24	ENST00000357444.10:ENST00000251507.8:ENST00000681986.1:ENST00000457696.1	protein_coding	protein_coding	protein_coding	protein_coding	5	64	2	2.2543	2.2636700000000003	2.27304	0.0158915	0.00787184	0.109464	0.076155
chr16	74555316	74555416	6524813	0	-	0.37	(0.35,0.378]	chr16	631838	228	INTRON	INTRON	GLG1	ENSG00000090863.12	ENST00000205061.9:ENST00000422840.7:ENST00000447066.6:ENST00000562090.5:ENST00000567951.5:ENST00000627032.2:ENST00000565474.1:ENST00000565260.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	81	2	1.99351	2.263605	2.5337	0.020841	0.0022093	0.111648	0.0435144
chr14	90798406	90798506	5951566	0	-	0.45	(0.44,0.476]	chr14	565050	117	INTRON	INTRON	TTC7B	ENSG00000165914.15	ENST00000328459.11:ENST00000553948.1	protein_coding	protein_coding	protein_coding	protein_coding	3	38	2	1.85146	2.26359	2.67572	0.0545846	0.0212064	0.182529	0.113017
chr7	67284496	67284595	3541681	0	-	0.454545	(0.44,0.476]	chr7	330372	98	INTRON	INTRON	PMS2P4	ENSG00000067601.9	ENST00000685171.1:ENST00000688358.1:ENST00000692496.1:ENST00000685583.1:ENST00000688710.1:ENST00000684859.1:ENST00000685318.1:ENST00000691713.1:ENST00000686389.1:ENST00000690253.1:ENST00000688815.1:ENST00000692171.1:ENST00000692360.1:ENST00000689281.1:ENST00000690241.1:ENST00000689629.1:ENST00000689043.1:ENST00000688809.1:ENST00000687432.1:ENST00000687680.1:ENST00000686900.1:ENST00000691782.1:ENST00000693356.1:ENST00000691384.1:ENST00000690440.1:ENST00000686719.1:ENST00000686561.1:ENST00000688238.1:ENST00000687826.1:ENST00000689908.1:ENST00000689385.1:ENST00000689855.1:ENST00000691806.1:ENST00000689028.1:ENST00000688599.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	3	38	2	1.85146	2.26359	2.67572	0.0545846	0.0212064	0.182529	0.113017
chr7	92112624	92112719	3568787	0	-	0.463158	(0.44,0.476]	chr7	332436	6	UTR3	UTR3:EXON_MRNA:INTRON	CYP51A1:ENSG00000289027	ENSG00000001630.18:ENSG00000289027.1	ENST00000691309.1:ENST00000003100.13:ENST00000692281.1:ENST00000693096.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	19	198	2	1.55301	2.26356	2.97411	0.00680887	5.67206e-5	0.0745866	0.00655354
chr3	48533322	48533421	1688671	0	-	0.30303	(0.28,0.32]	chr3	172531	73	INTRON	INTRON	PFKFB4	ENSG00000114268.12	ENST00000232375.8:ENST00000490115.5:ENST00000383734.6:ENST00000416568.5:ENST00000417753.5:ENST00000445633.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	12	184	2	1.95584	2.263535	2.57123	0.00824383	3.086e-4	0.0773378	0.0157366
chr5	34187987	34188086	2599965	0	-	0.626263	(0.57,1]	chr5	247053	48	INTRON	INTRON	GUSBP18	ENSG00000215158.9	ENST00000514048.5:ENST00000507274.1:ENST00000508395.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	10	62	2	1.59186	2.2635	2.93514	0.0206559	5.35006e-5	0.110999	0.00598316
chr1	23283898	23283998	399135	0	-	0.37	(0.35,0.378]	chr1	47822	27	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	LINC01355	ENSG00000261326.4	ENST00000655082.1:ENST00000647667.1:ENST00000566551.1:ENST00000660265.1:ENST00000666981.1	lncRNA	lncRNA	lncRNA	lncRNA	3	42	2	1.87717	2.263485	2.6498	0.0555068	0.0210137	0.165463	0.122348
chr1	35920503	35920602	71037	0	+	0.353535	(0.35,0.378]	chr1	9124	9	UTR3	UTR3:EXON_MRNA	AGO1	ENSG00000092847.13	ENST00000373206.5:ENST00000373204.6:ENST00000674426.1:ENST00000674304.1	protein_coding	protein_coding	protein_coding	protein_coding	3	42	2	1.87717	2.263485	2.6498	0.0555068	0.0210137	0.165463	0.122348
chr1	246092345	246092445	676555	0	-	0.37	(0.35,0.378]	chr1	79717	389	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000391836.3:ENST00000464398.1:ENST00000453676.5:ENST00000462422.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	42	2	1.87717	2.263485	2.6498	0.0555068	0.0210137	0.165463	0.122348
chr1	246289919	246290019	678534	0	-	0.37	(0.35,0.378]	chr1	79733	963	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000453676.5:ENST00000462422.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	42	2	1.87717	2.263485	2.6498	0.0555068	0.0210137	0.165463	0.122348
chr3	119499912	119500006	1485394	0	+	0.361702	(0.35,0.378]	chr3	155156	6	INTRON	INTRON	TIMMDC1	ENSG00000113845.10	ENST00000494664.6:ENST00000493694.1:ENST00000264244.7:ENST00000486418.5:ENST00000492164.5:ENST00000466984.1:ENST00000463927.6:ENST00000498399.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	42	2	1.87717	2.263485	2.6498	0.0555068	0.0210137	0.165463	0.122348
chr7	131404521	131404620	3417215	0	+	0.353535	(0.35,0.378]	chr7	319219	47	INTRON	INTRON	MKLN1	ENSG00000128585.18	ENST00000421797.6:ENST00000494286.5:ENST00000352689.11:ENST00000494785.5:ENST00000458153.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	42	2	1.87717	2.263485	2.6498	0.0555068	0.0210137	0.165463	0.122348
chr9	37439937	37440033	4250761	0	-	0.375	(0.35,0.378]	chr9	391476	20	UTR3	UTR3:EXON_MRNA	ZBTB5	ENSG00000168795.5	ENST00000307750.5	protein_coding	protein_coding	protein_coding	protein_coding	11	142	2	1.99874	2.26339	2.52804	0.00420575	9.79034e-4	0.0572185	0.0287765
chr3	177187677	177187777	1872351	0	-	0.39	(0.378,0.408]	chr3	187438	164	INTRON	INTRON	TBL1XR1	ENSG00000177565.18	ENST00000457928.7:ENST00000430069.5:ENST00000673974.1:ENST00000352800.10:ENST00000422442.6:ENST00000428970.5:ENST00000424913.5:ENST00000437738.5:ENST00000431421.5:ENST00000635794.1:ENST00000630796.2:ENST00000450267.5:ENST00000630833.2:ENST00000431674.5:ENST00000422066.5:ENST00000443315.5:ENST00000627825.2:ENST00000427349.5:ENST00000413084.5:ENST00000637137.1:ENST00000491623.2:ENST00000637544.1:ENST00000636187.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	9	112	2	2.1782	2.263375	2.34855	0.00587071	0.00119031	0.0668474	0.0316639
chr20	47313186	47313286	7349075	0	-	0.27	[0,0.28]	chr20	749342	26	INTRON	INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000468376.2:ENST00000435836.5:ENST00000446894.5:ENST00000441977.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	125	2	1.96971	2.26337	2.55703	0.0179051	0.00276846	0.106396	0.048706
chr3	64003169	64003266	1442419	0	+	0.298969	(0.28,0.32]	chr3	152458	38	UTR3	UTR3:EXON_MRNA	ATXN7	ENSG00000163635.20	ENST00000674280.1:ENST00000295900.10	protein_coding	protein_coding	protein_coding	protein_coding	4	65	2	2.05458	2.2633400000000004	2.4721	0.0381508	0.00906617	0.141764	0.0854289
chr6	170617809	170617909	3037629	0	+	0.36	(0.35,0.378]	chr6	283173	18	INTRON	INTRON	ENSG00000287411:ENSG00000230423	ENSG00000287411.1:ENSG00000230423.3	ENST00000667394.1:ENST00000656791.1	lncRNA	lncRNA	lncRNA	lncRNA	6	77	2	2.11889	2.2632950000000003	2.4077	0.0122026	0.00625927	0.0910127	0.0720609
chr15	65786527	65786627	6209739	0	-	0.26	[0,0.28]	chr15	592617	193	INTRON	INTRON	DENND4A	ENSG00000174485.16	ENST00000443035.8:ENST00000431932.6:ENST00000564674.5:ENST00000568515.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	139	2	1.76391	2.263275	2.76264	0.024511	0.00115414	0.12011	0.0313436
chr16	66733802	66733887	6502054	0	-	0.458824	(0.44,0.476]	chr16	629017	2	SS5_PROX	SS5_PROX:INTRON	DYNC1LI2	ENSG00000135720.13	ENST00000258198.7:ENST00000443351.6:ENST00000565532.5:ENST00000440564.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	13	150	2	1.71781	2.26324	2.8086700000000002	0.00956926	8.76333e-5	0.0820838	0.0078614
chr10	6093957	6094056	4385739	0	+	0.40404	(0.378,0.408]	chr10	404761	36	INTRON	INTRON	RBM17	ENSG00000134453.16	ENST00000379888.9:ENST00000437845.6:ENST00000432931.5:ENST00000446108.5	protein_coding	protein_coding	protein_coding	protein_coding	7	88	2	2.18994	2.263065	2.33619	0.00607113	0.00448961	0.0676501	0.0612035
chr3	48070783	48070883	1687319	0	-	0.45	(0.44,0.476]	chr3	172280	545	INTRON	INTRON	MAP4	ENSG00000047849.22	ENST00000395734.7:ENST00000426837.6:ENST00000360240.10:ENST00000423088.5:ENST00000439356.2:ENST00000468075.2	protein_coding	protein_coding	protein_coding	protein_coding	12	135	2	1.5718	2.2630350000000004	2.95427	0.0170387	8.41842e-5	0.104099	0.00775456
chr2	30259642	30259739	726175	0	+	0.484536	(0.476,0.515]	chr2	83954	22	UTR3	UTR3:EXON_MRNA:INTRON	LBH	ENSG00000213626.13	ENST00000395323.9:ENST00000404397.5	protein_coding	protein_coding	protein_coding	protein_coding	6	58	2	1.52755	2.263035	2.99852	0.0355377	0.0077575	0.151404	0.0757402
chr22	23270455	23270551	7484114	0	+	0.520833	(0.515,0.57]	chr22	763575	16	INTRON	INTRON	BCR	ENSG00000186716.21	ENST00000359540.7:ENST00000305877.13:ENST00000427791.1	protein_coding	protein_coding	protein_coding	protein_coding	8	80	2	2.05155	2.263025	2.4745	0.00440913	0.00279583	0.0609369	0.0469265
chr7	90387553	90387653	3347679	0	+	0.34	(0.32,0.35]	chr7	312031	25	UTR3	UTR3:EXON_MRNA:INTRON	GTPBP10:CLDN12	ENSG00000105793.16:ENSG00000157224.16	ENST00000380058.7:ENST00000222511.11:ENST00000416322.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	53	2	1.72898	2.263025	2.79707	0.0425433	0.0170923	0.161951	0.104099
chr8	70580674	70580774	3966913	0	-	0.4	(0.378,0.408]	chr8	363911	53	INTRON	INTRON	TRAM1	ENSG00000067167.8	ENST00000262213.7:ENST00000521425.5	protein_coding	protein_coding	protein_coding	protein_coding	7	67	2	1.57136	2.262975	2.95459	0.0233757	0.00957623	0.128037	0.0820838
chr9	137692416	137692516	4224220	0	+	0.57	(0.515,0.57]	chr9	388206	67	INTRON	INTRON	EHMT1	ENSG00000181090.21	ENST00000462484.5:ENST00000371394.6:ENST00000630754.2:ENST00000460843.6:ENST00000626216.2:ENST00000629335.2:ENST00000637335.1:ENST00000636376.1:ENST00000637655.1:ENST00000636027.1:ENST00000492232.5:ENST00000460486.3:ENST00000636081.1:ENST00000637161.1:ENST00000629417.1:ENST00000637662.1:ENST00000636186.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	40	2	1.69407	2.262975	2.83188	0.0459452	0.0108207	0.149888	0.0920575
chr20	41592027	41592127	7344281	0	-	0.48	(0.476,0.515]	chr20	748566	275	INTRON	INTRON	CHD6	ENSG00000124177.16	ENST00000373233.8:ENST00000373222.3:ENST00000482596.1:ENST00000440647.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	52	2	1.63962	2.26296	2.8863	0.0346854	0.0111679	0.148144	0.0877435
chr10	15123484	15123583	4562264	0	-	0.343434	(0.32,0.35]	chr10	421086	36	INTRON	INTRON	NMT2	ENSG00000152465.18	ENST00000378165.9:ENST00000378150.1	protein_coding	protein_coding	protein_coding	protein_coding	2	33	2	2.21917	2.26295	2.30673	0.0641245	0.0584434	0.199279	0.167723
chr4	150987322	150987422	2271492	0	-	0.34	(0.32,0.35]	chr4	220921	579	INTRON	INTRON	LRBA	ENSG00000198589.14	ENST00000357115.9:ENST00000651943.2:ENST00000510413.5:ENST00000651035.1:ENST00000507224.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	33	2	2.21917	2.26295	2.30673	0.0641245	0.0584434	0.199279	0.167723
chr5	62330553	62330653	2362276	0	+	0.34	(0.32,0.35]	chr5	227725	183	INTRON	INTRON	KIF2A	ENSG00000068796.19	ENST00000401507.7:ENST00000407818.8:ENST00000674632.1:ENST00000674916.1:ENST00000676413.1:ENST00000676122.1:ENST00000674751.1:ENST00000514082.6:ENST00000675085.1:ENST00000504883.2:ENST00000381103.7:ENST00000676271.1:ENST00000512541.5:ENST00000674733.1:ENST00000506857.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	33	2	2.21917	2.26295	2.30673	0.0641245	0.0584434	0.199279	0.167723
chr5	111107639	111107739	2451292	0	+	0.35	(0.32,0.35]	chr5	234838	2	SS5_PROX	SS5_PROX:INTRON	WDR36	ENSG00000134987.13	ENST00000505303.5:ENST00000513710.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	33	2	2.21917	2.26295	2.30673	0.0641245	0.0584434	0.199279	0.167723
chr7	30616813	30616913	3301669	0	+	0.35	(0.32,0.35]	chr7	306580	3	SS3_PROX	SS3_PROX:INTRON	GARS1	ENSG00000106105.15	ENST00000675051.1:ENST00000470392.2:ENST00000674643.1:ENST00000675529.1:ENST00000674807.1:ENST00000675810.1:ENST00000676088.1:ENST00000674815.1:ENST00000676403.1:ENST00000485784.2:ENST00000676210.1:ENST00000478124.6:ENST00000389266.8:ENST00000675693.1:ENST00000676259.1:ENST00000675651.1:ENST00000674616.1:ENST00000674737.1:ENST00000675859.1:ENST00000676140.1:ENST00000674969.1:ENST00000676164.1:ENST00000675886.1:ENST00000444666.6:ENST00000675587.1:ENST00000674851.1:ENST00000675863.1:ENST00000674734.1:ENST00000484093.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	55	2	2.14793	2.262935	2.37794	0.0498601	0.0110079	0.156383	0.0927187
chr5	43297908	43298008	2614275	0	-	0.33	(0.32,0.35]	chr5	248513	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	HMGCS1	ENSG00000112972.15	ENST00000325110.11:ENST00000433297.2	protein_coding	protein_coding	protein_coding	protein_coding	15	148	2	1.43013	2.262855	3.09558	0.0148301	9.89544e-4	0.106811	0.0287967
chr6	26120521	26120620	3070829	0	-	0.353535	(0.35,0.378]	chr6	285403	50	INTRON	INTRON	H2BC4	ENSG00000180596.8	ENST00000314332.5	protein_coding	protein_coding	protein_coding	protein_coding	5	57	2	1.4414	2.262855	3.08431	0.0629423	0.0065853	0.196658	0.0701901
chr17	39351330	39351430	6766149	0	-	0.34	(0.32,0.35]	chr17	665497	77	INTRON	INTRON	FBXL20	ENSG00000108306.13	ENST00000264658.11:ENST00000583610.5:ENST00000394294.7:ENST00000577399.5:ENST00000647139.1	protein_coding	protein_coding	protein_coding	protein_coding	3	44	2	2.07985	2.2628250000000003	2.4458	0.0425977	0.0303092	0.148082	0.143025
chr18	2722318	2722418	6865554	0	+	0.33	(0.32,0.35]	chr18	680044	4	SS3_PROX	SS3_PROX:INTRON	SMCHD1	ENSG00000101596.17	ENST00000320876.11:ENST00000688342.1:ENST00000693213.1:ENST00000577880.5:ENST00000584897.5:ENST00000581711.1:ENST00000583441.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	44	2	2.07985	2.2628250000000003	2.4458	0.0425977	0.0303092	0.148082	0.143025
chr16	85567452	85567552	6415506	0	+	0.68	(0.57,1]	chr16	615470	107	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	5	33	2	1.79063	2.26281	2.73499	0.0356001	0.00237434	0.15159	0.0438057
chr20	49046245	49046334	7283784	0	+	0.696629	(0.57,1]	chr20	740810	1	UTR5	UTR5:EXON_MRNA	CSE1L	ENSG00000124207.17	ENST00000396192.7:ENST00000262982.3	protein_coding	protein_coding	protein_coding	protein_coding	5	33	2	1.79063	2.26281	2.73499	0.0356001	0.00237434	0.15159	0.0438057
chr1	212746697	212746797	634329	0	-	0.34	(0.32,0.35]	chr1	74949	67	INTRON	INTRON	NSL1	ENSG00000117697.15	ENST00000366977.8:ENST00000366978.5:ENST00000366976.3:ENST00000626725.1	protein_coding	protein_coding	protein_coding	protein_coding	3	44	2	1.95271	2.26267	2.57263	0.0431213	0.0312297	0.162255	0.13151
chr15	72751483	72751578	6220076	0	-	0.336842	(0.32,0.35]	chr15	593816	3	UTR3	UTR3:EXON_MRNA	ADPGK	ENSG00000159322.18	ENST00000456471.3:ENST00000311669.12:ENST00000569534.5:ENST00000567941.5:ENST00000569693.5:ENST00000562621.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	44	2	1.95271	2.26267	2.57263	0.0431213	0.0312297	0.162255	0.13151
chr5	131266462	131266562	2484660	0	+	0.53	(0.515,0.57]	chr5	237114	19	INTRON	INTRON	CDC42SE2	ENSG00000158985.14	ENST00000502840.5:ENST00000511432.5:ENST00000506419.5:ENST00000395246.5:ENST00000505065.2:ENST00000504701.5:ENST00000503291.5:ENST00000360515.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	80	2	2.08662	2.26261	2.4386	0.00375149	0.00326739	0.0562562	0.0508595
chr11	65997326	65997424	4967911	0	-	0.336735	(0.32,0.35]	chr11	468355	9	UTR3	UTR3:EXON_MRNA	EIF1AD	ENSG00000175376.9	ENST00000312234.6:ENST00000533544.6:ENST00000526451.5	protein_coding	protein_coding	protein_coding	protein_coding	15	198	2	1.71746	2.262565	2.80767	0.00856606	1.19681e-4	0.0781466	0.00936986
chr4	78814959	78815059	1981771	0	+	0.35	(0.32,0.35]	chr4	198463	379	INTRON	INTRON	BMP2K	ENSG00000138756.19	ENST00000389010.7:ENST00000502613.3:ENST00000502871.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	72	2	2.06478	2.262525	2.46027	0.0147778	0.0108973	0.106702	0.0873034
chr2	9504366	9504466	1063954	0	-	0.51	(0.476,0.515]	chr2	113476	17	INTRON	INTRON	ADAM17	ENSG00000151694.14	ENST00000310823.8:ENST00000648548.1:ENST00000649227.1:ENST00000648857.1:ENST00000647979.1:ENST00000647610.1:ENST00000650116.1:ENST00000649686.1:ENST00000649068.1:ENST00000647622.1:ENST00000649972.1:ENST00000650241.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	61	2	2.06898	2.26248	2.45598	0.0137491	0.00945755	0.10247	0.0817766
chr6	35835888	35835988	3087949	0	-	0.34	(0.32,0.35]	chr6	288807	4	SS3_PROX	SS3_PROX:INTRON	SRPK1	ENSG00000096063.16	ENST00000373825.7:ENST00000423325.6:ENST00000346162.10:ENST00000361690.7:ENST00000505885.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	92	2	1.46679	2.262435	3.05808	0.0497695	7.67153e-4	0.156383	0.0254532
chr5	138538631	138538730	2732624	0	-	0.353535	(0.35,0.378]	chr5	257415	86	INTRON	INTRON	ETF1	ENSG00000120705.13	ENST00000360541.10:ENST00000499810.6:ENST00000503014.5:ENST00000512198.1:ENST00000572514.5:ENST00000507939.5:ENST00000514005.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	78	2	1.84611	2.262425	2.67874	0.0204148	0.00373022	0.110862	0.0561984
chr1	113102240	113102337	188401	0	+	0.371134	(0.35,0.378]	chr1	20907	14	INTRON	INTRON	LRIG2	ENSG00000198799.12	ENST00000361127.6:ENST00000466069.5:ENST00000492207.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	139	2	1.59887	2.26235	2.92583	0.0202563	1.1531e-4	0.110054	0.0092036
chr19	28473976	28474076	7165834	0	-	0.47	(0.44,0.476]	chr19	724189	57	INTRON	INTRON	ENSG00000283403:ENSG00000267243	ENSG00000283403.1:ENSG00000267243.6	ENST00000592347.5:ENST00000593065.5	lncRNA	lncRNA	lncRNA	lncRNA	5	62	2	1.92837	2.262345	2.59632	0.0222222	0.00579248	0.124303	0.0662959
chr19	35541426	35541524	7172452	0	-	0.530612	(0.515,0.57]	chr19	724801	8	EXON_LNCRNA	EXON_LNCRNA	TMEM147-AS1	ENSG00000236144.9	ENST00000589137.5:ENST00000444728.3:ENST00000590717.2:ENST00000660248.1:ENST00000670097.1:ENST00000667891.1:ENST00000660839.1:ENST00000590125.2	lncRNA	lncRNA	lncRNA	lncRNA	7	60	2	1.61321	2.262305	2.9114	0.0202182	0.00826019	0.109913	0.0813266
chr6	34638700	34638800	3085637	0	-	0.3	(0.28,0.32]	chr6	288679	314	INTRON	INTRON	ILRUN	ENSG00000196821.10	ENST00000374026.7:ENST00000374023.8:ENST00000374021.1	protein_coding	protein_coding	protein_coding	protein_coding	5	79	2	1.98806	2.26227	2.53648	0.0199553	0.00925866	0.120668	0.0817766
chr7	107462923	107463023	3612014	0	-	0.41	(0.408,0.44]	chr7	336694	499	INTRON	INTRON	COG5	ENSG00000164597.15	ENST00000297135.9:ENST00000347053.8:ENST00000393603.7:ENST00000484237.5:ENST00000475638.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	85	2	2.23023	2.262245	2.29426	0.0087201	0.00277178	0.0788605	0.04874
chr16	81005333	81005433	6530682	0	-	0.5	(0.476,0.515]	chr16	632677	36	INTRON	INTRON	CMC2	ENSG00000103121.9	ENST00000219400.8:ENST00000486645.5:ENST00000570195.5:ENST00000569187.5:ENST00000570086.5:ENST00000565650.5:ENST00000567593.5:ENST00000568228.5:ENST00000565914.5:ENST00000565108.5:ENST00000565925.5:ENST00000564174.5:ENST00000565613.5:ENST00000562713.3:ENST00000562828.5:ENST00000630396.1:ENST00000565514.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	76	2	2.01953	2.262205	2.50488	0.0163662	0.00285353	0.109586	0.0474836
chr7	5701168	5701268	3474147	0	-	0.36	(0.35,0.378]	chr7	324821	483	INTRON	INTRON	RNF216	ENSG00000011275.19	ENST00000425013.6:ENST00000389902.8:ENST00000389900.8:ENST00000484458.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	51	2	1.6599	2.262205	2.86451	0.0545616	0.0109111	0.165292	0.0923273
chr5	289509	289609	2312799	0	+	0.43	(0.408,0.44]	chr5	223715	127	INTRON	INTRON	PDCD6	ENSG00000249915.9	ENST00000614778.4:ENST00000618970.4:ENST00000513582.5:ENST00000264933.9:ENST00000505221.5:ENST00000507528.5:ENST00000505526.1:ENST00000507473.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	63	2	1.8749	2.26217	2.64944	0.0264246	0.00481947	0.133676	0.060277
chr7	128535129	128535229	3407395	0	+	0.48	(0.476,0.515]	chr7	318333	10	INTRON	INTRON	ENSG00000280828	ENSG00000280828.1	ENST00000479267.2	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	8	94	2	1.87849	2.26215	2.64581	0.00992862	0.00154394	0.0877296	0.0357205
chr3	43528120	43528220	1674495	0	-	0.31	(0.28,0.32]	chr3	170972	950	INTRON	INTRON	ANO10	ENSG00000160746.13	ENST00000292246.8:ENST00000350459.8:ENST00000396091.7:ENST00000414522.6:ENST00000451430.6:ENST00000448045.1	protein_coding	protein_coding	protein_coding	protein_coding	4	59	2	2.06884	2.262145	2.45545	0.0438092	0.0152581	0.14901	0.108569
chr7	101823975	101824075	3366428	0	+	0.33	(0.32,0.35]	chr7	315215	46	INTRON	INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000497815.5:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000607092.1:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000558469.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	54	2	1.55682	2.26214	2.96746	0.0724487	0.00815799	0.188101	0.0810802
chr1	90992863	90992963	502236	0	-	0.49	(0.476,0.515]	chr1	59504	101	INTRON	INTRON	ZNF644	ENSG00000122482.22	ENST00000370440.5:ENST00000337393.10:ENST00000347275.9:ENST00000361321.5:ENST00000467231.5:ENST00000498303.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	78	2	1.44826	2.2621350000000002	3.07601	0.0482164	5.95211e-4	0.153146	0.0221865
chr3	197883765	197883864	1598675	0	+	0.373737	(0.35,0.378]	chr3	165690	2	UTR3	UTR3:EXON_MRNA	LRCH3	ENSG00000186001.14	ENST00000438796.6:ENST00000425562.7:ENST00000441090.6:ENST00000414675.6:ENST00000433298.5	protein_coding	protein_coding	protein_coding	protein_coding	4	56	2	2.23651	2.262105	2.2877	0.020879	0.0155765	0.111766	0.109411
chr7	121141382	121141472	3395180	0	+	0.288889	(0.28,0.32]	chr7	317770	4	SS5_PROX	SS5_PROX:INTRON	CPED1	ENSG00000106034.18	ENST00000310396.10:ENST00000450913.6:ENST00000423795.5	protein_coding	protein_coding	protein_coding	protein_coding	4	65	2	2.14002	2.261965	2.38391	0.0304107	0.0122525	0.130461	0.0969406
chr14	96533915	96534011	5810493	0	+	0.385417	(0.378,0.408]	chr14	550920	14	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	PAPOLA	ENSG00000090060.19	ENST00000618976.2:ENST00000216277.13:ENST00000553689.5:ENST00000557320.5:ENST00000392990.6:ENST00000555626.5:ENST00000553461.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	40	2	2.2259	2.26194	2.29798	0.0662381	0.0147606	0.181924	0.106702
chr22	17642081	17642181	7475053	0	+	0.46	(0.44,0.476]	chr22	762152	28	INTRON	INTRON	BCL2L13	ENSG00000099968.18	ENST00000399781.5:ENST00000399782.5:ENST00000337612.9:ENST00000418951.6:ENST00000538149.5:ENST00000543133.5:ENST00000611738.4:ENST00000616863.4:ENST00000618481.4:ENST00000498133.5:ENST00000317582.10:ENST00000464649.1:ENST00000493680.5:ENST00000355028.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	51	2	2.02558	2.261905	2.49823	0.0363567	0.00718224	0.138959	0.0756118
chr4	143363728	143363828	2054342	0	+	0.46	(0.44,0.476]	chr4	203721	198	INTRON	INTRON	GAB1	ENSG00000109458.9	ENST00000262995.8:ENST00000262994.9:ENST00000514639.5	protein_coding	protein_coding	protein_coding	protein_coding	4	51	2	2.02558	2.261905	2.49823	0.0363567	0.00718224	0.138959	0.0756118
chr12	116084773	116084873	5423614	0	-	0.32	(0.28,0.32]	chr12	518245	618	INTRON	INTRON	MED13L	ENSG00000123066.9	ENST00000281928.9:ENST00000650226.1:ENST00000648737.1:ENST00000548743.2:ENST00000647567.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	11	168	2	1.9891	2.2618650000000002	2.53463	0.00726883	6.24568e-4	0.0731365	0.0224805
chr16	70269217	70269317	6510284	0	-	0.52	(0.515,0.57]	chr16	630568	2	SS5_PROX	SS5_PROX:INTRON	AARS1	ENSG00000090861.17	ENST00000674963.1:ENST00000675643.1:ENST00000675917.1:ENST00000674691.1:ENST00000261772.13:ENST00000675569.1:ENST00000676209.1:ENST00000676211.1:ENST00000676040.1:ENST00000675953.1:ENST00000675691.1:ENST00000676004.1:ENST00000675270.1:ENST00000675403.1:ENST00000676212.1:ENST00000675045.1:ENST00000675035.1:ENST00000676168.1:ENST00000674652.1:ENST00000675133.1:ENST00000675120.1:ENST00000674811.1:ENST00000674512.1:ENST00000675853.1:ENST00000565361.3:ENST00000676247.1:ENST00000674848.1:ENST00000674962.1:ENST00000675371.1:ENST00000675986.1:ENST00000674768.1:ENST00000675297.1:ENST00000675751.1:ENST00000564359.6:ENST00000675338.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	108	2	2.17087	2.2618099999999997	2.35275	0.00219906	0.00101917	0.0417893	0.0293964
chr3	47146743	47146843	1681432	0	-	0.49	(0.476,0.515]	chr3	171624	197	INTRON	INTRON	SETD2	ENSG00000181555.22	ENST00000691544.1:ENST00000638947.2:ENST00000409792.4:ENST00000412450.1	protein_coding	protein_coding	protein_coding	protein_coding	6	70	2	1.71266	2.26171	2.81076	0.0293304	0.00203568	0.128055	0.0417667
chr6	147727636	147727736	2991273	0	+	0.45	(0.44,0.476]	chr6	280167	348	INTRON	INTRON	ENSG00000227681	ENSG00000227681.5	ENST00000427015.1:ENST00000432506.5:ENST00000442094.5:ENST00000434985.1	lncRNA	lncRNA	lncRNA	lncRNA	6	70	2	1.92704	2.26168	2.59632	0.0128054	0.00579248	0.0990564	0.0662959
chr14	27617537	27617637	5849027	0	-	0.38	(0.378,0.408]	chr14	556260	2950	INTRON	INTRON	ENSG00000258932	ENSG00000258932.5	ENST00000553392.5:ENST00000554904.5:ENST00000556890.1:ENST00000555797.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	7	84	2	1.82032	2.26165	2.70298	0.01477	0.00325723	0.0984422	0.0524329
chrX	48941412	48941511	7815910	0	-	0.363636	(0.35,0.378]	chrX	796860	47	INTRON	INTRON	OTUD5	ENSG00000068308.15	ENST00000376488.8:ENST00000396743.7:ENST00000455452.5:ENST00000156084.8:ENST00000428668.2:ENST00000484499.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	67	2	2.24196	2.2616050000000003	2.28125	0.0182271	0.00744693	0.107842	0.0772645
chr7	26192338	26192426	3506141	0	-	0.272727	[0,0.28]	chr7	327157	1	UTR3	UTR3:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HNRNPA2B1	ENSG00000122566.22	ENST00000679318.1:ENST00000677339.1:ENST00000678501.1:ENST00000676903.1:ENST00000608362.2:ENST00000677631.1:ENST00000676749.1:ENST00000677574.1:ENST00000679123.1:ENST00000677906.1:ENST00000476233.2:ENST00000677669.1:ENST00000677321.1:ENST00000678277.1:ENST00000677571.1:ENST00000679124.1:ENST00000676932.1:ENST00000678973.1:ENST00000678183.1:ENST00000679021.1:ENST00000678035.1:ENST00000677075.1:ENST00000678075.1:ENST00000678631.1:ENST00000678998.1:ENST00000490912.6:ENST00000354667.8:ENST00000618183.5:ENST00000677839.1:ENST00000677037.1:ENST00000678449.1:ENST00000679001.1:ENST00000678962.1:ENST00000676524.1:ENST00000678935.1:ENST00000678675.1:ENST00000676746.1:ENST00000356674.8:ENST00000678431.1:ENST00000678697.1:ENST00000678779.1:ENST00000676497.1:ENST00000677396.1:ENST00000360787.8:ENST00000679243.1:ENST00000677656.1:ENST00000463181.5:ENST00000678884.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	23	368	2	1.92479	2.26158	2.59837	0.00162587	5.8557e-4	0.0370678	0.0224393
chr1	161600470	161600560	235519	0	+	0.622222	(0.57,1]	chr1	28433	3	INTRON	INTRON	FCGR2C	ENSG00000244682.8	ENST00000467903.5:ENST00000507374.5:ENST00000508651.1	polymorphic_pseudogene	processed_transcript	polymorphic_pseudogene	processed_transcript	7	44	2	2.02689	2.2615499999999997	2.49621	0.00839052	0.00209832	0.0823837	0.0413494
chr12	130874833	130874925	5247121	0	+	0.608696	(0.57,1]	chr12	498944	1	SS5_PROX	SS5_PROX:INTRON	RAN	ENSG00000132341.12	ENST00000448750.7:ENST00000536606.5:ENST00000543796.6:ENST00000541630.5:ENST00000392369.6:ENST00000477395.5:ENST00000535090.5:ENST00000541679.7:ENST00000392367.4:ENST00000464211.6:ENST00000539498.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	45	2	2.24207	2.2615499999999997	2.28103	0.0151554	0.00159402	0.108535	0.0364566
chr3	120053290	120053390	1795044	0	-	0.47	(0.44,0.476]	chr3	180278	313	INTRON	INTRON	GSK3B:ENSG00000288662	ENSG00000082701.17:ENSG00000288662.1	ENST00000264235.13:ENST00000316626.6:ENST00000678439.1:ENST00000650344.2:ENST00000677788.1:ENST00000678245.1:ENST00000677169.1:ENST00000677128.1:ENST00000678483.1:ENST00000677530.1:ENST00000677034.1:ENST00000679131.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA:processed_transcript	4	46	2	1.49942	2.26154	3.02366	0.0792118	0.00603307	0.199574	0.0700813
chr1	46718467	46718563	444443	0	-	0.5	(0.476,0.515]	chr1	53914	4	UTR5	UTR5:EXON_MRNA	EFCAB14	ENSG00000159658.15	ENST00000674268.1:ENST00000371933.8:ENST00000672422.2:ENST00000674435.1:ENST00000479745.6:ENST00000674495.1:ENST00000674263.1:ENST00000459797.2:ENST00000674415.1:ENST00000484461.2:ENST00000674302.1:ENST00000674331.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	28	2	2.13854	2.2614799999999997	2.38442	0.0776563	0.0417472	0.196285	0.161736
chr1	202340199	202340299	619842	0	-	0.48	(0.476,0.515]	chr1	73518	40	INTRON	INTRON	UBE2T	ENSG00000077152.11	ENST00000487227.6:ENST00000646595.1:ENST00000646651.1:ENST00000643045.1:ENST00000460852.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	28	2	2.13854	2.2614799999999997	2.38442	0.0776563	0.0417472	0.196285	0.161736
chr13	99283878	99283978	5525271	0	+	0.48	(0.476,0.515]	chr13	528241	389	INTRON	INTRON	UBAC2	ENSG00000134882.16	ENST00000355700.9:ENST00000403766.8:ENST00000468067.5:ENST00000473091.5:ENST00000376440.6:ENST00000494576.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	28	2	2.13854	2.2614799999999997	2.38442	0.0776563	0.0417472	0.196285	0.161736
chr15	41114476	41114575	6153222	0	-	0.515152	(0.476,0.515]	chr15	585431	178	INTRON	INTRON	INO80	ENSG00000128908.18	ENST00000648947.1:ENST00000401393.7:ENST00000558357.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	28	2	2.13854	2.2614799999999997	2.38442	0.0776563	0.0417472	0.196285	0.161736
chr17	73224178	73224277	6835135	0	-	0.494949	(0.476,0.515]	chr17	675246	111	INTRON	INTRON	FAM104A	ENSG00000133193.13	ENST00000403627.7:ENST00000405159.8:ENST00000583178.5:ENST00000580032.1:ENST00000581110.1:ENST00000579872.1:ENST00000583024.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	28	2	2.13854	2.2614799999999997	2.38442	0.0776563	0.0417472	0.196285	0.161736
chr2	62359530	62359630	790924	0	+	0.48	(0.476,0.515]	chr2	88712	132	INTRON	INTRON	ENSG00000228541	ENSG00000228541.2	ENST00000689590.1:ENST00000687402.1:ENST00000687773.1	lncRNA	lncRNA	lncRNA	lncRNA	2	28	2	2.13854	2.2614799999999997	2.38442	0.0776563	0.0417472	0.196285	0.161736
chr21	36891559	36891659	7460809	0	-	0.48	(0.476,0.515]	chr21	760114	1239	INTRON	INTRON	HLCS	ENSG00000159267.17	ENST00000674895.3:ENST00000336648.8:ENST00000612277.4:ENST00000399120.5:ENST00000675307.1:ENST00000675057.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	28	2	2.13854	2.2614799999999997	2.38442	0.0776563	0.0417472	0.196285	0.161736
chr22	47860412	47860510	7541670	0	+	0.489796	(0.476,0.515]	chr22	770790	41	INTRON	INTRON	ENSG00000224271	ENSG00000224271.7	ENST00000664761.1:ENST00000650683.1:ENST00000651536.1:ENST00000651445.1:ENST00000650660.1:ENST00000651056.1:ENST00000652399.1:ENST00000652123.1:ENST00000652030.2:ENST00000651403.1:ENST00000652228.1:ENST00000651124.1:ENST00000651003.1:ENST00000651948.2:ENST00000651293.1:ENST00000651939.1:ENST00000651638.1:ENST00000670853.1:ENST00000652080.1:ENST00000651294.1:ENST00000651538.1:ENST00000651033.1:ENST00000651584.1	lncRNA	lncRNA	lncRNA	lncRNA	2	28	2	2.13854	2.2614799999999997	2.38442	0.0776563	0.0417472	0.196285	0.161736
chr9	95217235	95217334	4291030	0	-	0.494949	(0.476,0.515]	chr9	394734	108	INTRON	INTRON	FANCC	ENSG00000158169.14	ENST00000289081.8:ENST00000375305.6:ENST00000649334.1:ENST00000490972.7:ENST00000649701.1:ENST00000696261.1:ENST00000636777.1:ENST00000474949.1:ENST00000647778.1:ENST00000433829.1:ENST00000647882.1:ENST00000649519.1:ENST00000650176.1:ENST00000648415.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	28	2	2.13854	2.2614799999999997	2.38442	0.0776563	0.0417472	0.196285	0.161736
chr19	28497746	28497846	7166072	0	-	0.34	(0.32,0.35]	chr19	724189	295	INTRON	INTRON	ENSG00000283403:ENSG00000267243	ENSG00000283403.1:ENSG00000267243.6	ENST00000592347.5:ENST00000593065.5	lncRNA	lncRNA	lncRNA	lncRNA	10	138	2	2.25847	2.26145	2.26443	0.00481959	0.00133783	0.060277	0.033609
chr15	22588957	22589054	5975501	0	+	0.28866000000000003	(0.28,0.32]	chr15	568248	12	INTRON	INTRON	HERC2P2	ENSG00000276550.5	ENST00000619021.4:ENST00000690192.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	3	49	2	1.91611	2.261335	2.60656	0.0539102	0.0256827	0.164153	0.133676
chr7	56061343	56061440	3319139	0	+	0.319588	(0.28,0.32]	chr7	308524	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CCT6A	ENSG00000146731.11	ENST00000335503.3:ENST00000275603.9:ENST00000492618.5:ENST00000462133.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	49	2	1.91611	2.261335	2.60656	0.0539102	0.0256827	0.164153	0.133676
chr9	135941006	135941100	4372355	0	-	0.521277	(0.515,0.57]	chr9	402514	9	INTRON	INTRON	UBAC1	ENSG00000130560.9	ENST00000371756.4:ENST00000489050.5:ENST00000465873.5:ENST00000471163.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	15	147	2	2.06425	2.2613149999999997	2.45838	9.60754e-4	4.02165e-4	0.028512	0.0185763
chr7	156953098	156953182	3453721	0	+	0.380952	(0.378,0.408]	chr7	322838	1	INTRON	INTRON	NOM1	ENSG00000146909.8	ENST00000275820.4	protein_coding	protein_coding	protein_coding	protein_coding	3	43	2	2.26009	2.261305	2.26252	0.056222	0.0188651	0.18407	0.108861
chr16	11730044	11730144	6445071	0	-	0.44	(0.408,0.44]	chr16	620819	80	INTRON	INTRON	TXNDC11	ENSG00000153066.13	ENST00000283033.10:ENST00000356957.7:ENST00000575591.1:ENST00000576969.5:ENST00000571882.1:ENST00000573174.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	38	2	2.00768	2.2613000000000003	2.51492	0.035843	0.0329839	0.152216	0.133816
chr4	1873139	1873238	1910587	0	+	0.434343	(0.408,0.44]	chr4	191707	12	INTRON	INTRON	NSD2	ENSG00000109685.19	ENST00000508803.6:ENST00000507820.5:ENST00000508355.5:ENST00000514045.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	38	2	2.00768	2.2613000000000003	2.51492	0.035843	0.0329839	0.152216	0.133816
chr5	157855630	157855730	2758620	0	-	0.42	(0.408,0.44]	chr5	260304	377	INTRON	INTRON	CLINT1	ENSG00000113282.14	ENST00000523094.5:ENST00000411809.7:ENST00000530742.5:ENST00000523908.5	protein_coding	protein_coding	protein_coding	protein_coding	3	38	2	2.00768	2.2613000000000003	2.51492	0.035843	0.0329839	0.152216	0.133816
chr9	33506375	33506474	4244488	0	-	0.414141	(0.408,0.44]	chr9	390314	14	INTRON	INTRON	SUGT1P1	ENSG00000226823.1	ENST00000379514.2	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	3	38	2	2.00768	2.2613000000000003	2.51492	0.035843	0.0329839	0.152216	0.133816
chr6	36448468	36448567	2853969	0	+	0.383838	(0.378,0.408]	chr6	269700	46	INTRON	INTRON	KCTD20	ENSG00000112078.14	ENST00000536244.5:ENST00000373731.7:ENST00000483557.5:ENST00000474988.5:ENST00000498267.5:ENST00000481911.5:ENST00000449081.6:ENST00000265344.8:ENST00000460983.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	53	2	2.05897	2.26121	2.46345	0.0339294	0.00827342	0.134508	0.0813266
chr6	42661588	42661683	2866073	0	+	0.389474	(0.378,0.408]	chr6	271183	14	INTRON	INTRON	UBR2	ENSG00000024048.11	ENST00000372899.6:ENST00000372901.2	protein_coding	protein_coding	protein_coding	protein_coding	4	53	2	2.05897	2.26121	2.46345	0.0339294	0.00827342	0.134508	0.0813266
chr6	124988603	124988702	2951735	0	+	0.333333	(0.32,0.35]	chr6	277678	47	INTRON	INTRON	RNF217	ENSG00000146373.17	ENST00000521654.7:ENST00000560949.5:ENST00000519565.5:ENST00000454842.2:ENST00000368414.6:ENST00000519799.5:ENST00000359704.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	53	2	1.83315	2.26118	2.68921	0.0313348	0.0230336	0.144381	0.118056
chr2	23768519	23768618	1079337	0	-	0.393939	(0.378,0.408]	chr2	115203	25	INTRON	INTRON	ATAD2B	ENSG00000119778.15	ENST00000238789.10:ENST00000381024.4:ENST00000474583.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	53	2	2.11194	2.261155	2.41037	0.0292534	0.0100185	0.128055	0.0880217
chr7	99456645	99456736	3362040	0	+	0.43956	(0.408,0.44]	chr7	314020	1	UTR3	UTR3:EXON_MRNA	CPSF4	ENSG00000160917.15	ENST00000436336.6:ENST00000292476.10:ENST00000451876.5:ENST00000469897.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	103	2	2.01032	2.2611499999999998	2.51198	0.00377558	0.00288187	0.0562562	0.0475859
chr10	68340231	68340319	4440849	0	+	0.602273	(0.57,1]	chr10	409500	3	INTRON	INTRON	HNRNPH3	ENSG00000096746.18	ENST00000469172.5:ENST00000265866.12:ENST00000480987.5:ENST00000354695.5:ENST00000481819.5:ENST00000491200.5:ENST00000490442.5:ENST00000478698.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	35	2	1.62753	2.2610799999999998	2.89463	0.0184812	0.00788262	0.116694	0.076155
chr6	36600859	36600956	2854486	0	+	0.381443	(0.378,0.408]	chr6	269793	7	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	SRSF3	ENSG00000112081.17	ENST00000373715.11:ENST00000339436.11:ENST00000477442.6:ENST00000620941.1:ENST00000620389.1:ENST00000614136.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	157	2	2.22341	2.26104	2.29867	0.00295931	4.26082e-4	0.0486566	0.0184573
chr10	72609732	72609831	4646768	0	-	0.515152	(0.476,0.515]	chr10	427462	426	INTRON	INTRON	MICU1	ENSG00000107745.20	ENST00000361114.10:ENST00000642044.1:ENST00000635239.1:ENST00000604238.2:ENST00000603011.5:ENST00000604025.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	62	2	2.10874	2.2610099999999997	2.41328	0.0285608	0.00355364	0.12666	0.0547657
chr9	37207534	37207634	4118532	0	+	0.36	(0.35,0.378]	chr9	375389	206	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000461038.5:ENST00000488607.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	113	2	2.16794	2.26098	2.35402	0.00596483	0.00191705	0.0674604	0.0405072
chr12	53464564	53464661	5143020	0	+	0.340206	(0.32,0.35]	chr12	485419	2	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	PCBP2:PCBP2-OT1	ENSG00000197111.16:ENSG00000282977.1	ENST00000546463.6:ENST00000437231.5:ENST00000447282.5:ENST00000359282.9:ENST00000549863.5:ENST00000359462.9:ENST00000552296.6:ENST00000552819.5:ENST00000455667.7:ENST00000439930.7:ENST00000548933.5:ENST00000546652.6:ENST00000562264.5:ENST00000550585.5:ENST00000547987.2:ENST00000553064.6:ENST00000547859.2:ENST00000549272.1:ENST00000634357.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA	6	83	2	1.77253	2.260915	2.7493	0.0271031	0.00296357	0.123904	0.0500135
chr7	43724533	43724633	3526329	0	-	0.36	(0.35,0.378]	chr7	328785	127	INTRON	INTRON	COA1	ENSG00000106603.20	ENST00000415076.6:ENST00000446330.6:ENST00000446564.5:ENST00000438444.5:ENST00000223336.11:ENST00000310564.10:ENST00000415798.5:ENST00000431651.5:ENST00000451651.5:ENST00000418140.5:ENST00000448704.5:ENST00000470156.1:ENST00000457939.1:ENST00000420441.1:ENST00000478504.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	81	2	2.20121	2.26091	2.32061	0.0104157	0.00545884	0.085482	0.0669938
chr7	121025728	121025828	3394008	0	+	0.36	(0.35,0.378]	chr7	317682	95	INTRON	INTRON	CPED1	ENSG00000106034.18	ENST00000340646.9:ENST00000310396.10:ENST00000428526.5:ENST00000495036.5:ENST00000450913.6:ENST00000520801.5:ENST00000521774.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	81	2	2.20121	2.26091	2.32061	0.0104157	0.00545884	0.085482	0.0669938
chr4	150940357	150940457	2271022	0	-	0.36	(0.35,0.378]	chr4	220921	109	INTRON	INTRON	LRBA	ENSG00000198589.14	ENST00000357115.9:ENST00000651943.2:ENST00000510413.5:ENST00000651035.1:ENST00000507224.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	94	2	1.99351	2.2607749999999998	2.52804	0.020841	9.79034e-4	0.111648	0.0287765
chr12	68614752	68614852	5161243	0	+	0.39	(0.378,0.408]	chr12	488573	33	INTRON	INTRON	RAP1B	ENSG00000127314.18	ENST00000460800.5:ENST00000393436.9:ENST00000250559.14:ENST00000425247.6:ENST00000501412.2:ENST00000450214.6:ENST00000463493.5:ENST00000537460.5:ENST00000341355.9:ENST00000538283.5:ENST00000541167.5:ENST00000422358.6:ENST00000489473.6:ENST00000545270.5:ENST00000538980.5:ENST00000543393.5:ENST00000542018.5:ENST00000540209.5:ENST00000378985.7:ENST00000453560.6:ENST00000534899.5:ENST00000542145.5:ENST00000539091.5:ENST00000535492.5:ENST00000540781.5:ENST00000485252.6:ENST00000538877.5:ENST00000541386.5:ENST00000543697.5:ENST00000545720.6:ENST00000541216.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	73	2	2.0848	2.260685	2.43657	0.0106733	0.00697927	0.0861859	0.0754576
chr17	66381117	66381217	6663083	0	+	0.57	(0.515,0.57]	chr17	650326	169	INTRON	INTRON	PRKCA	ENSG00000154229.12	ENST00000413366.8:ENST00000578063.5:ENST00000284384.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	63	2	2.06758	2.260665	2.45375	0.0140038	0.00273605	0.0959618	0.0483437
chr7	100269237	100269337	3586378	0	-	0.56	(0.515,0.57]	chr7	334323	228	INTRON	INTRON	CASTOR3	ENSG00000239521.10	ENST00000649671.1:ENST00000543273.5:ENST00000328453.9:ENST00000454084.5:ENST00000435519.6:ENST00000414739.3:ENST00000647868.1:ENST00000689058.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	6	63	2	2.06758	2.260665	2.45375	0.0140038	0.00273605	0.0959618	0.0483437
chr1	93217539	93217637	163555	0	+	0.5	(0.476,0.515]	chr1	17730	4	SS3_PROX	SS3_PROX:INTRON	CCDC18	ENSG00000122483.18	ENST00000343253.11:ENST00000401026.7:ENST00000690592.1:ENST00000370276.6:ENST00000690025.1:ENST00000692873.1:ENST00000455267.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	62	2	1.86014	2.26063	2.66112	0.0277606	0.0044598	0.137011	0.0592169
chr4	123111888	123111988	2037533	0	+	0.5	(0.476,0.515]	chr4	202384	97	INTRON	INTRON	SPATA5	ENSG00000145375.9	ENST00000675612.1:ENST00000274008.5	protein_coding	protein_coding	protein_coding	protein_coding	5	62	2	1.86014	2.26063	2.66112	0.0277606	0.0044598	0.137011	0.0592169
chr1	21724736	21724831	396265	0	-	0.294737	(0.28,0.32]	chr1	47274	7	UTR5	UTR5:EXON_MRNA:INTRON	USP48	ENSG00000090686.16	ENST00000400301.5:ENST00000308271.14:ENST00000374732.7:ENST00000529637.5:ENST00000487880.2:ENST00000526044.5:ENST00000534705.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	15	227	2	1.97375	2.260535	2.54732	0.00482624	2.29085e-4	0.0603558	0.0133403
chr15	89093331	89093431	6094614	0	+	0.5	(0.476,0.515]	chr15	579964	3	SS3_PROX	SS3_PROX:INTRON	ABHD2	ENSG00000140526.18	ENST00000569411.5:ENST00000569550.5:ENST00000564876.5:ENST00000565066.5:ENST00000565973.5:ENST00000352732.10:ENST00000565825.5:ENST00000562254.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	52	2	2.06491	2.260445	2.45598	0.0304733	0.00945755	0.143385	0.0817766
chr2	10644019	10644119	1065939	0	-	0.49	(0.476,0.515]	chr2	113731	3	SS5_PROX	SS5_PROX:INTRON	NOL10	ENSG00000115761.17	ENST00000695464.1:ENST00000695470.1:ENST00000695467.1:ENST00000695468.1:ENST00000695469.1:ENST00000695466.1:ENST00000381685.10:ENST00000695471.1:ENST00000345985.7:ENST00000538384.5:ENST00000695472.1:ENST00000695473.1:ENST00000695475.1:ENST00000695476.1:ENST00000695477.1:ENST00000695478.1:ENST00000695479.1:ENST00000431319.2:ENST00000695480.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	52	2	2.06491	2.260445	2.45598	0.0304733	0.00945755	0.143385	0.0817766
chr19	46785157	46785256	7195391	0	-	0.484848	(0.476,0.515]	chr19	729004	2	INTRON	INTRON	SLC1A5	ENSG00000105281.12	ENST00000542575.6:ENST00000412532.6	protein_coding	protein_coding	protein_coding	protein_coding	10	118	2	1.88327	2.260435	2.6376	0.00672673	6.87765e-4	0.0738715	0.0240091
chr9	125285563	125285663	4198493	0	+	0.49	(0.476,0.515]	chr9	383148	162	INTRON	INTRON	GAPVD1	ENSG00000165219.23	ENST00000497580.5:ENST00000461379.5:ENST00000297933.11:ENST00000394084.5:ENST00000469528.5:ENST00000470056.5:ENST00000394105.6:ENST00000394083.6:ENST00000495955.5:ENST00000467750.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	59	2	1.69413	2.26043	2.82673	0.0200655	0.0134403	0.121043	0.0946278
chr7	64799767	64799867	3320398	0	+	0.51	(0.476,0.515]	chr7	308703	48	INTRON	INTRON	ZNF138	ENSG00000197008.10	ENST00000359735.7:ENST00000440155.6:ENST00000494380.5:ENST00000307355.12:ENST00000437743.1:ENST00000440598.2:ENST00000430838.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	84	2	1.99699	2.260395	2.5238	0.0110277	0.00218334	0.0873897	0.0435144
chr6	27810574	27810665	2839006	0	+	0.417582	(0.408,0.44]	chr6	266438	2	UTR3	UTR3:EXON_MRNA	H3C10	ENSG00000278828.2	ENST00000369163.4	protein_coding	protein_coding	protein_coding	protein_coding	17	192	2	1.973	2.260355	2.54771	0.00119239	3.62876e-4	0.0317174	0.0176417
chr16	218551	218651	6426079	0	-	0.49	(0.476,0.515]	chr16	617437	89	INTRON	INTRON	LUC7L	ENSG00000007392.17	ENST00000337351.8:ENST00000426094.5:ENST00000397783.5:ENST00000629543.2:ENST00000490762.5:ENST00000293872.13:ENST00000419516.5:ENST00000397780.5:ENST00000418978.5:ENST00000430864.5:ENST00000443357.5:ENST00000494366.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	95	2	2.17347	2.260335	2.3472	0.010447	0.00117711	0.0855102	0.031662
chr11	68568851	68568950	4818433	0	+	0.575758	(0.57,1]	chr11	448989	13	INTRON	INTRON	PPP6R3	ENSG00000110075.15	ENST00000534534.5:ENST00000524845.5:ENST00000393800.7:ENST00000265637.8:ENST00000524904.5:ENST00000393801.7:ENST00000265636.9:ENST00000529710.5:ENST00000527403.6:ENST00000534190.5:ENST00000526574.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	44	2	2.12821	2.26021	2.39221	0.00521663	0.00352602	0.0633615	0.0546236
chr17	2400810	2400908	6705137	0	-	0.591837	(0.57,1]	chr17	656521	2	UTR5	UTR5:EXON_MRNA	MNT	ENSG00000070444.15	ENST00000174618.5:ENST00000575394.1	protein_coding	protein_coding	protein_coding	protein_coding	7	44	2	2.12821	2.26021	2.39221	0.00521663	0.00352602	0.0633615	0.0546236
chr17	20870080	20870179	6576079	0	+	0.636364	(0.57,1]	chr17	639372	10	INTRON	INTRON	CCDC144NL-AS1	ENSG00000233098.10	ENST00000577537.5:ENST00000692759.1:ENST00000443508.8:ENST00000692309.1:ENST00000439794.6:ENST00000417232.6:ENST00000583962.2:ENST00000582324.5:ENST00000577860.5	lncRNA	lncRNA	lncRNA	lncRNA	7	44	2	2.12821	2.26021	2.39221	0.00521663	0.00352602	0.0633615	0.0546236
chr11	9252091	9252191	4908941	0	-	0.49	(0.476,0.515]	chr11	460115	67	INTRON	INTRON	DENND5A	ENSG00000184014.9	ENST00000328194.8:ENST00000681203.1:ENST00000530780.2:ENST00000679999.1:ENST00000680470.1:ENST00000680554.1:ENST00000681425.1:ENST00000679568.1:ENST00000679446.1:ENST00000680294.1:ENST00000680742.1:ENST00000680885.1:ENST00000530044.5:ENST00000526707.5:ENST00000532696.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	38	2	2.19809	2.260195	2.3223	0.0519312	0.020317	0.159306	0.121522
chr2	39428593	39428693	1104214	0	-	0.48	(0.476,0.515]	chr2	118511	489	INTRON	INTRON	MAP4K3	ENSG00000011566.15	ENST00000263881.8:ENST00000341681.9:ENST00000429397.5:ENST00000437968.1:ENST00000484274.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	38	2	2.19809	2.260195	2.3223	0.0519312	0.020317	0.159306	0.121522
chr5	6714867	6714951	2315849	0	+	0.488095	(0.476,0.515]	chr5	224264	3	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	TENT4A	ENSG00000112941.14	ENST00000230859.8:ENST00000515721.1:ENST00000631941.2	protein_coding	protein_coding	protein_coding	protein_coding	3	38	2	2.19809	2.260195	2.3223	0.0519312	0.020317	0.159306	0.121522
chr19	11128085	11128185	7017227	0	+	0.65	(0.57,1]	chr19	697509	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	LDLR	ENSG00000130164.14	ENST00000557933.5:ENST00000558518.6:ENST00000545707.5:ENST00000535915.5:ENST00000455727.6:ENST00000558013.5:ENST00000252444.9:ENST00000560628.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	40	2	1.20176	2.260175	3.31859	0.0551275	0.00137292	0.165463	0.0340241
chr8	102301747	102301847	4011620	0	-	0.38	(0.378,0.408]	chr8	367131	12	INTRON	INTRON	UBR5	ENSG00000104517.13	ENST00000520539.6:ENST00000220959.8:ENST00000521922.5:ENST00000520898.5:ENST00000519365.1	protein_coding	protein_coding	protein_coding	protein_coding	10	103	2	1.75132	2.260125	2.76893	0.00695593	0.00316735	0.0754576	0.0503085
chr19	61799	61894	7108435	0	-	0.505263	(0.476,0.515]	chr19	713615	10	EXON_LNCRNA	EXON_LNCRNA	WASH5P	ENSG00000282458.1	ENST00000632506.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	6	70	2	1.58972	2.26009	2.93046	0.0427022	0.00118985	0.148082	0.031662
chr11	61966988	61967077	4958199	0	-	0.505618	(0.476,0.515]	chr11	466170	1	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	FTH1	ENSG00000167996.16	ENST00000529191.5:ENST00000529631.5:ENST00000530019.5:ENST00000273550.12:ENST00000534180.1:ENST00000532829.5:ENST00000620041.4:ENST00000526640.5:ENST00000532601.1:ENST00000534719.1:ENST00000533138.1:ENST00000529548.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	27	267	2	1.84909	2.26	2.67091	7.55924e-4	1.70069e-4	0.0251966	0.0119761
chr1	51244373	51244473	98258	0	+	0.49	(0.476,0.515]	chr1	13196	71	INTRON	INTRON	RNF11	ENSG00000123091.5	ENST00000242719.4:ENST00000494873.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	70	2	1.75142	2.259985	2.76855	0.0259024	0.00244302	0.121522	0.0456956
chr20	49285480	49285579	7284676	0	+	0.393939	(0.378,0.408]	chr20	741065	33	INTRON	INTRON	ZFAS1	ENSG00000177410.13	ENST00000371743.8:ENST00000417721.5:ENST00000441722.5:ENST00000450535.5:ENST00000458653.5:ENST00000428008.6:ENST00000620594.2:ENST00000652916.1:ENST00000326677.9:ENST00000659056.1	lncRNA	lncRNA	lncRNA	lncRNA	6	79	2	2.09402	2.25998	2.42594	0.0126438	0.00428028	0.0982897	0.0574861
chr2	17750995	17751093	1074079	0	-	0.234694	[0,0.28]	chr2	114655	47	INTRON	INTRON	SMC6	ENSG00000163029.16	ENST00000351948.8:ENST00000448223.7:ENST00000402989.5:ENST00000446852.5:ENST00000621152.4:ENST00000428868.1	protein_coding	protein_coding	protein_coding	protein_coding	12	208	2	2.17641	2.259975	2.34354	0.00328588	0.00199304	0.0510063	0.0412155
chr1	155913630	155913728	564633	0	-	0.346939	(0.32,0.35]	chr1	67435	7	UTR3	UTR3:EXON_MRNA	KHDC4	ENSG00000132680.11	ENST00000368321.8:ENST00000368320.7	protein_coding	protein_coding	protein_coding	protein_coding	20	270	2	1.74765	2.25997	2.77229	0.00593472	3.17557e-5	0.0674604	0.00449913
chr15	64372555	64372655	6204999	0	-	0.49	(0.476,0.515]	chr15	591787	61	INTRON	INTRON	ENSG00000259316:PCLAF	ENSG00000259316.12:ENSG00000166803.14	ENST00000634251.1:ENST00000634847.3:ENST00000634318.1:ENST00000635160.1:ENST00000635704.1:ENST00000634529.1:ENST00000635511.1:ENST00000635605.1:ENST00000635593.1:ENST00000634259.2:ENST00000560278.2:ENST00000635413.1:ENST00000634538.1:ENST00000635320.1:ENST00000558783.2:ENST00000300035.9:ENST00000380258.6:ENST00000559519.5:ENST00000558008.3:ENST00000558043.5:ENST00000560234.1:ENST00000559280.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	59	2	1.32871	2.25995	3.19119	0.0678032	0.00325748	0.184298	0.0524329
chr10	12016678	12016777	4557519	0	-	0.40404	(0.378,0.408]	chr10	420618	21	INTRON	INTRON	UPF2	ENSG00000151461.20	ENST00000357604.10:ENST00000356352.6:ENST00000397053.6	protein_coding	protein_coding	protein_coding	protein_coding	5	54	2	1.5653	2.259945	2.95459	0.043739	0.00957623	0.162255	0.0820838
chr2	201218427	201218525	982535	0	+	0.418367	(0.408,0.44]	chr2	105520	8	UTR3	UTR3:EXON_MRNA:INTRON	CASP10	ENSG00000003400.16	ENST00000272879.9:ENST00000346817.10:ENST00000696199.1:ENST00000286186.11:ENST00000448480.1	protein_coding	protein_coding	protein_coding	protein_coding	9	108	2	2.18269	2.259945	2.3372	0.0055386	0.00122451	0.0648867	0.0324961
chr7	10753392	10753492	3484314	0	-	0.36	(0.35,0.378]	chr7	325772	1915	INTRON	INTRON	MGC4859	ENSG00000283117.1	ENST00000634803.1	lncRNA	lncRNA	lncRNA	lncRNA	6	77	2	1.56881	2.2599299999999998	2.95105	0.047622	0.00115843	0.153019	0.0313803
chr16	47530115	47530214	6343995	0	+	0.393939	(0.378,0.408]	chr16	608885	3	INTRON	INTRON	PHKB	ENSG00000102893.17	ENST00000566037.6:ENST00000566044.5:ENST00000299167.12:ENST00000696809.1:ENST00000323584.10:ENST00000565424.2:ENST00000567402.5:ENST00000570047.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	40	2	1.88729	2.25988	2.63247	0.0532327	0.0215745	0.162538	0.123836
chr17	40130719	40130789	6609049	0	+	0.385714	(0.378,0.408]	chr17	643636	1	SS3_PROX	SS3_PROX:INTRON	MSL1	ENSG00000188895.12	ENST00000398532.9:ENST00000578648.5:ENST00000579565.5:ENST00000582884.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	40	2	1.88729	2.25988	2.63247	0.0532327	0.0215745	0.162538	0.123836
chr2	171127255	171127355	1263763	0	-	0.29	(0.28,0.32]	chr2	133921	90	INTRON	INTRON	TLK1	ENSG00000198586.14	ENST00000431350.7:ENST00000360843.7:ENST00000359766.7:ENST00000521943.5:ENST00000409443.6:ENST00000413010.5:ENST00000470340.1:ENST00000466220.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	95	2	1.9021	2.2598700000000003	2.61764	0.0304779	0.00179526	0.130699	0.0392772
chr1	29175083	29175183	410376	0	-	0.39	(0.378,0.408]	chr1	49421	17	INTRON	INTRON	SRSF4	ENSG00000116350.18	ENST00000373795.7:ENST00000691479.1:ENST00000466448.4:ENST00000605204.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	81	2	1.78414	2.259855	2.73557	0.0144669	0.00360869	0.105142	0.0533855
chr1	108962683	108962776	519173	0	-	0.548387	(0.515,0.57]	chr1	60936	5	UTR5	UTR5:EXON_MRNA:SS3_PROX:INTRON	CLCC1	ENSG00000121940.17	ENST00000690509.1:ENST00000687328.1:ENST00000685014.1:ENST00000685540.1:ENST00000686576.1:ENST00000688070.1:ENST00000691513.1:ENST00000686821.1:ENST00000692511.1:ENST00000689479.1:ENST00000687646.1:ENST00000687998.1:ENST00000687226.1:ENST00000693336.1:ENST00000689991.1:ENST00000687591.1:ENST00000691777.1:ENST00000690756.1:ENST00000688778.1:ENST00000685104.1:ENST00000689103.1:ENST00000687734.1:ENST00000686434.1:ENST00000685497.1:ENST00000691342.1:ENST00000686776.1:ENST00000692342.1:ENST00000689351.1:ENST00000692584.1:ENST00000692775.1:ENST00000675018.1:ENST00000690781.1:ENST00000691556.1:ENST00000689189.1:ENST00000687099.1:ENST00000685791.1:ENST00000687865.1:ENST00000687449.1:ENST00000688285.1:ENST00000369968.7:ENST00000674992.1:ENST00000675001.1:ENST00000369969.7:ENST00000356970.6:ENST00000688610.1:ENST00000675128.1:ENST00000693089.1:ENST00000675571.1:ENST00000675650.1:ENST00000369970.8:ENST00000674561.2:ENST00000675654.1:ENST00000675790.1:ENST00000675584.1:ENST00000692795.1:ENST00000691731.1:ENST00000689359.1:ENST00000676392.2:ENST00000676391.2:ENST00000676454.1:ENST00000674849.1:ENST00000675956.1:ENST00000302500.5:ENST00000675508.1:ENST00000688168.1:ENST00000693673.1:ENST00000692404.1:ENST00000686078.1:ENST00000690874.1:ENST00000692732.1:ENST00000685628.1:ENST00000676306.1:ENST00000676059.2:ENST00000674527.1:ENST00000691876.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	17	167	2	1.76886	2.2597750000000003	2.75069	0.00434929	2.76585e-5	0.0581164	0.00415129
chr12	131712418	131712515	5249099	0	+	0.484536	(0.476,0.515]	chr12	499138	11	EXON_MRNA	EXON_MRNA:INTRON	SFSWAP	ENSG00000061936.10	ENST00000540469.5:ENST00000261674.9:ENST00000538548.5:ENST00000535399.1:ENST00000535236.5:ENST00000541286.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	78	2	1.62782	2.259735	2.89165	0.0274391	0.00142068	0.123904	0.034662
chr14	101793154	101793253	5818811	0	+	0.454545	(0.44,0.476]	chr14	551829	34	INTRON	INTRON	PPP2R5C	ENSG00000078304.20	ENST00000694906.1:ENST00000422945.6:ENST00000554442.5:ENST00000556068.5:ENST00000328724.9:ENST00000554504.1:ENST00000553890.1:ENST00000553554.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	48	2	2.22103	2.259725	2.29842	0.0552483	0.00776319	0.165463	0.0787356
chr1	40396499	40396599	81672	0	+	0.35	(0.32,0.35]	chr1	10558	26	INTRON	INTRON	SMAP2	ENSG00000084070.12	ENST00000435168.6:ENST00000372718.8:ENST00000372708.5:ENST00000614549.4	protein_coding	protein_coding	protein_coding	protein_coding	6	82	2	2.02327	2.259685	2.4961	0.00967886	0.00956045	0.0863913	0.0828038
chr10	28546853	28546953	4413942	0	+	0.23	[0,0.28]	chr10	407148	84	INTRON	INTRON	WAC	ENSG00000095787.24	ENST00000680735.1:ENST00000375664.8:ENST00000428935.6:ENST00000651598.1:ENST00000628285.3:ENST00000681112.1:ENST00000679570.1:ENST00000375646.5:ENST00000354911.9:ENST00000347934.8:ENST00000420266.6:ENST00000651885.1:ENST00000651441.1:ENST00000679398.1:ENST00000424454.5:ENST00000442148.6:ENST00000448193.5:ENST00000414108.6:ENST00000679428.1:ENST00000439676.5:ENST00000345541.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	68	2	2.13176	2.259665	2.38757	0.0552962	0.0135097	0.165463	0.101363
chr15	89115222	89115322	6094839	0	+	0.36	(0.35,0.378]	chr15	579995	10	INTRON	INTRON	ABHD2	ENSG00000140526.18	ENST00000569411.5:ENST00000569550.5:ENST00000565066.5:ENST00000565973.5:ENST00000352732.10	protein_coding	protein_coding	protein_coding	protein_coding	4	52	2	1.7942	2.25959	2.72498	0.0378648	0.0168499	0.141212	0.11068
chr22	20953551	20953649	7480881	0	+	0.234694	[0,0.28]	chr22	763101	39	UTR3	UTR3:EXON_MRNA	CRKL	ENSG00000099942.13	ENST00000354336.8:ENST00000411769.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	19	319	2	2.02908	2.25959	2.4901	0.00148992	9.45022e-4	0.0355788	0.0281373
chr4	165332740	165332839	2079681	0	+	0.363636	(0.35,0.378]	chr4	205560	43	INTRON	INTRON	MSMO1	ENSG00000052802.13	ENST00000507013.5:ENST00000261507.11:ENST00000393766.6:ENST00000504317.1:ENST00000505270.1	protein_coding	protein_coding	protein_coding	protein_coding	16	168	2	1.78495	2.259575	2.7342	0.00263849	0.00125312	0.0473006	0.0323608
chr8	31063988	31064088	3728237	0	+	0.37	(0.35,0.378]	chr8	346536	3	SS3_PROX	SS3_PROX:INTRON	WRN	ENSG00000165392.11	ENST00000650667.1:ENST00000298139.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	109	2	1.71411	2.259565	2.80502	0.0310697	2.28494e-4	0.13151	0.0133228
chr1	235400403	235400503	340004	0	+	0.59	(0.57,1]	chr1	39551	199	INTRON	INTRON	TBCE	ENSG00000285053.1:ENSG00000284770.2	ENST00000644055.1:ENST00000645655.1:ENST00000647428.1:ENST00000643418.1:ENST00000646624.1:ENST00000647186.1:ENST00000646528.1:ENST00000645351.1:ENST00000643410.1:ENST00000645205.1:ENST00000645836.1:ENST00000642503.1:ENST00000646281.1:ENST00000645069.1:ENST00000644680.1:ENST00000643758.1:ENST00000645578.1:ENST00000642431.1:ENST00000644604.1:ENST00000651186.1:ENST00000643125.1:ENST00000406207.5:ENST00000642463.1:ENST00000645899.1:ENST00000647233.1:ENST00000642926.1:ENST00000644578.1:ENST00000647418.1:ENST00000645372.1:ENST00000645582.1:ENST00000643994.1:ENST00000647407.1:ENST00000642610.2:ENST00000644037.1:ENST00000646463.1:ENST00000366601.8:ENST00000643524.1:ENST00000646536.1:ENST00000643142.1:ENST00000644838.1:ENST00000646286.1:ENST00000646186.1:ENST00000643615.1:ENST00000543662.4:ENST00000646848.1:ENST00000647332.1:ENST00000647489.1:ENST00000644625.1:ENST00000646384.1:ENST00000645551.1:ENST00000646821.1:ENST00000472011.6:ENST00000643238.1:ENST00000646104.1:ENST00000645662.1:ENST00000643993.1:ENST00000645964.1:ENST00000642339.1:ENST00000644217.1:ENST00000642372.1:ENST00000646929.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	42	2	1.2666	2.25955	3.2525	0.0788045	1.55446e-4	0.198736	0.0106835
chr1	180490869	180490969	595716	0	-	0.44	(0.408,0.44]	chr1	71198	603	INTRON	INTRON	ACBD6	ENSG00000230124.8	ENST00000645415.1:ENST00000642319.1:ENST00000367595.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	38	2	2.07919	2.259535	2.43988	0.0398236	0.0291499	0.143072	0.14147
chr5	54285693	54285793	2620669	0	-	0.42	(0.408,0.44]	chr5	248860	1134	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2:ENST00000505630.5:ENST00000505383.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	38	2	2.07919	2.259535	2.43988	0.0398236	0.0291499	0.143072	0.14147
chr7	72902786	72902886	3330026	0	+	0.42	(0.408,0.44]	chr7	309565	113	INTRON	INTRON	POM121	ENSG00000196313.13	ENST00000627934.3:ENST00000395270.5	protein_coding	protein_coding	protein_coding	protein_coding	3	38	2	2.07919	2.259535	2.43988	0.0398236	0.0291499	0.143072	0.14147
chr7	128484760	128484858	3407153	0	+	0.520408	(0.515,0.57]	chr7	318292	15	INTRON	INTRON	ENSG00000273184:METTL2B	ENSG00000273184.1:ENSG00000165055.16	ENST00000462662.1:ENST00000482555.5:ENST00000262432.13:ENST00000497665.5:ENST00000480046.5:ENST00000419443.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA	6	64	2	2.11724	2.2595099999999997	2.40178	0.0110335	0.00382306	0.0927187	0.0542786
chr1	226064163	226064257	327782	0	+	0.319149	(0.28,0.32]	chr1	37744	3	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	H3-3A	ENSG00000163041.13	ENST00000366816.5:ENST00000366814.3:ENST00000366815.10:ENST00000653960.1:ENST00000655399.1:ENST00000667897.1:ENST00000656829.1:ENST00000666609.1:ENST00000661429.1:ENST00000366813.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	65	2	1.96376	2.259485	2.55521	0.0480066	0.0067419	0.153019	0.0739405
chr1	246216225	246216325	677797	0	-	0.44	(0.408,0.44]	chr1	79733	226	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000453676.5:ENST00000462422.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	38	2	1.93243	2.259335	2.58624	0.0441194	0.0273686	0.162255	0.123904
chr17	18863076	18863176	6569794	0	+	0.43	(0.408,0.44]	chr17	638816	20	INTRON	INTRON	PRPSAP2	ENSG00000141127.15	ENST00000441887.5:ENST00000610773.4:ENST00000432893.6:ENST00000573432.5:ENST00000414602.5:ENST00000574522.5:ENST00000570450.5:ENST00000492129.5:ENST00000419071.6:ENST00000573253.5:ENST00000487101.5:ENST00000536323.5:ENST00000571907.5:ENST00000419284.6:ENST00000412418.5:ENST00000268835.7:ENST00000575228.5:ENST00000395656.6:ENST00000478622.6:ENST00000575102.5:ENST00000455992.6:ENST00000576355.5:ENST00000422237.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	38	2	1.93243	2.259335	2.58624	0.0441194	0.0273686	0.162255	0.123904
chrX	77785344	77785444	7847462	0	-	0.43	(0.408,0.44]	chrX	800212	1	SS5_PROX	SS5_PROX:INTRON	ATRX	ENSG00000085224.23	ENST00000373344.11:ENST00000395603.7:ENST00000480283.5:ENST00000624166.3:ENST00000624032.3:ENST00000623321.3:ENST00000624668.3:ENST00000622960.1:ENST00000624193.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	38	2	1.93243	2.259335	2.58624	0.0441194	0.0273686	0.162255	0.123904
chr3	185742112	185742211	1885519	0	-	0.292929	(0.28,0.32]	chr3	188573	434	INTRON	INTRON	IGF2BP2	ENSG00000073792.16	ENST00000382199.7:ENST00000346192.7:ENST00000457616.6:ENST00000421047.3:ENST00000461957.5:ENST00000493302.5:ENST00000466476.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	65	2	2.18092	2.259315	2.33771	0.0271832	0.0142701	0.123904	0.103838
chr2	110664075	110664175	1206721	0	-	0.34	(0.32,0.35]	chr2	128694	17	INTRON	INTRON	BUB1	ENSG00000169679.15	ENST00000302759.11:ENST00000535254.6:ENST00000409311.5:ENST00000466333.5:ENST00000666956.1:ENST00000465029.5:ENST00000477481.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	62	2	1.38564	2.2592049999999997	3.13277	0.0793006	0.00458313	0.199711	0.0622676
chr8	123392204	123392304	4042601	0	-	0.35	(0.32,0.35]	chr8	368789	112	INTRON	INTRON	ATAD2	ENSG00000156802.13	ENST00000287394.10:ENST00000517666.5:ENST00000521903.5:ENST00000519124.5:ENST00000521496.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	73	2	2.06533	2.259195	2.45306	0.0174225	0.00916394	0.10453	0.0855292
chr21	9108996	9109096	7426429	0	-	0.39	(0.378,0.408]	chr21	757579	207	INTRON	INTRON	TEKT4P2	ENSG00000188681.12	ENST00000690061.1:ENST00000689141.1:ENST00000688310.1:ENST00000687537.1:ENST00000690096.1:ENST00000687888.1:ENST00000690389.1:ENST00000684989.1:ENST00000416067.6:ENST00000693307.1:ENST00000692383.1:ENST00000685666.1:ENST00000688451.1:ENST00000691190.1:ENST00000685532.1:ENST00000687488.1:ENST00000690713.1:ENST00000691834.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	4	53	2	2.16303	2.25915	2.35527	0.0252473	0.0121511	0.12011	0.0963966
chr17	50977721	50977816	6795537	0	-	0.526316	(0.515,0.57]	chr17	670841	1	INTRON	INTRON	SPAG9	ENSG00000008294.22	ENST00000262013.12:ENST00000510283.5:ENST00000505279.5:ENST00000357122.8:ENST00000513746.6:ENST00000511312.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	80	2	2.15429	2.259145	2.364	0.00447856	0.00272344	0.0593175	0.0481781
chr19	11601318	11601417	7018056	0	+	0.383838	(0.378,0.408]	chr19	697688	33	INTRON	INTRON	ZNF627	ENSG00000198551.10	ENST00000593279.5:ENST00000585493.5:ENST00000587939.5:ENST00000361113.10:ENST00000588174.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	41	2	2.05897	2.259145	2.45932	0.0346754	0.0339294	0.148144	0.134508
chr1	198268115	198268214	288776	0	+	0.292929	(0.28,0.32]	chr1	33194	35	INTRON	INTRON	NEK7	ENSG00000151414.15	ENST00000367385.9:ENST00000538004.5	protein_coding	protein_coding	protein_coding	protein_coding	3	48	2	2.1895	2.259105	2.32871	0.0581621	0.0227063	0.167723	0.124921
chr15	93021098	93021195	6104965	0	+	0.319588	(0.28,0.32]	chr15	581650	9	UTR3	UTR3:EXON_MRNA:INTRON	CHD2	ENSG00000173575.22	ENST00000626874.2:ENST00000394196.9:ENST00000625662.2:ENST00000627460.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	48	2	2.1895	2.259105	2.32871	0.0581621	0.0227063	0.167723	0.124921
chr20	34419861	34419959	7259686	0	+	0.306122	(0.28,0.32]	chr20	737453	12	EXON_LNCRNA	EXON_LNCRNA:INTRON	ITCH	ENSG00000078747.16	ENST00000374864.10:ENST00000535650.7:ENST00000670516.1:ENST00000658310.1:ENST00000665484.1:ENST00000664852.1:ENST00000660337.1:ENST00000665428.1:ENST00000262650.10:ENST00000662871.1:ENST00000665346.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	48	2	2.1895	2.259105	2.32871	0.0581621	0.0227063	0.167723	0.124921
chr3	88161960	88162060	1458020	0	+	0.32	(0.28,0.32]	chr3	153232	41	INTRON	INTRON	C3orf38	ENSG00000179021.10	ENST00000485219.1	protein_coding	processed_transcript	protein_coding	processed_transcript	3	48	2	2.1895	2.259105	2.32871	0.0581621	0.0227063	0.167723	0.124921
chr4	126694065	126694165	2237650	0	-	0.31	(0.28,0.32]	chr4	219023	2286	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	3	48	2	2.1895	2.259105	2.32871	0.0581621	0.0227063	0.167723	0.124921
chr7	117050959	117051059	3386967	0	+	0.3	(0.28,0.32]	chr7	317151	276	INTRON	INTRON	ST7:ST7-OT4	ENSG00000004866.22:ENSG00000214188.9	ENST00000393446.6:ENST00000265437.9:ENST00000393451.7:ENST00000438863.5:ENST00000393449.5:ENST00000443979.5:ENST00000323984.8:ENST00000417919.5:ENST00000446490.5:ENST00000471110.5:ENST00000422922.5:ENST00000432298.5:ENST00000449366.5:ENST00000487459.5:ENST00000393443.5:ENST00000467538.5:ENST00000434836.5:ENST00000465133.5:ENST00000477742.5:ENST00000462544.1:ENST00000393444.7:ENST00000393447.8	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:nonsense_mediated_decay:lncRNA:processed_transcript	3	48	2	2.1895	2.259105	2.32871	0.0581621	0.0227063	0.167723	0.124921
chr8	99053629	99053729	3811662	0	+	0.29	(0.28,0.32]	chr8	353065	147	INTRON	INTRON	VPS13B	ENSG00000132549.20	ENST00000496144.5:ENST00000683334.1:ENST00000682853.1:ENST00000357162.7:ENST00000358544.7:ENST00000683619.1:ENST00000441350.2:ENST00000684269.1:ENST00000682806.1:ENST00000683869.1:ENST00000682153.1:ENST00000682358.1:ENST00000682145.1:ENST00000355155.6:ENST00000682234.1:ENST00000683486.1:ENST00000684308.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	48	2	2.1895	2.259105	2.32871	0.0581621	0.0227063	0.167723	0.124921
chr4	67960	68050	1905437	0	+	0.522222	(0.515,0.57]	chr4	191007	2	UTR3	UTR3:EXON_MRNA:INTRON	ZNF595	ENSG00000272602.6	ENST00000608255.2:ENST00000609518.5:ENST00000509152.3:ENST00000610261.6	protein_coding	protein_coding	protein_coding	protein_coding	19	174	2	1.81965	2.259075	2.6985	0.00185256	1.37652e-4	0.0388883	0.010101
chr3	14470806	14470906	1370093	0	+	0.58	(0.57,1]	chr3	144371	22	INTRON	INTRON	SLC6A6	ENSG00000131389.18	ENST00000613060.4:ENST00000618278.4:ENST00000610642.4:ENST00000649500.1:ENST00000622186.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	50	2	2.22366	2.2590700000000004	2.29448	0.00344378	0.00237038	0.0539802	0.0438057
chr11	482079	482178	4719225	0	+	0.59596	(0.57,1]	chr11	436026	16	INTRON	INTRON	PTDSS2	ENSG00000174915.12	ENST00000532614.5:ENST00000308020.6:ENST00000531520.5:ENST00000526878.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	57	2	1.60137	2.2590149999999998	2.91666	0.0150485	2.13552e-4	0.0994339	0.0128246
chr1	167956151	167956251	248684	0	+	0.31	(0.28,0.32]	chr1	29542	39	INTRON	INTRON	DCAF6	ENSG00000143164.16	ENST00000450548.5:ENST00000470919.5:ENST00000432587.6:ENST00000367843.7:ENST00000470721.5:ENST00000367840.4:ENST00000312263.10:ENST00000455334.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	58	2	1.94591	2.2589300000000003	2.57195	0.0331711	0.0228482	0.133994	0.125519
chr4	55613850	55613949	2150472	0	-	0.474747	(0.44,0.476]	chr4	211629	43	INTRON	INTRON	NMU	ENSG00000109255.11	ENST00000511469.5:ENST00000264218.7:ENST00000505262.5:ENST00000507338.1:ENST00000515325.5:ENST00000509371.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	46	2	1.98146	2.25893	2.5364	0.0309324	0.0186013	0.13151	0.117264
chr6	12021017	12021116	2814313	0	+	0.474747	(0.44,0.476]	chr6	264794	2	INTRON	INTRON	HIVEP1	ENSG00000095951.17	ENST00000491710.5:ENST00000487103.5:ENST00000379388.7:ENST00000627968.2:ENST00000541134.5:ENST00000442081.6:ENST00000478545.1:ENST00000484210.1	protein_coding	protein_coding	protein_coding	protein_coding	4	46	2	1.98146	2.25893	2.5364	0.0309324	0.0186013	0.13151	0.117264
chr9	5129257	5129356	4097294	0	+	0.353535	(0.35,0.378]	chr9	373366	26	UTR3	UTR3:EXON_MRNA	JAK2	ENSG00000096968.14	ENST00000381652.4	protein_coding	protein_coding	protein_coding	protein_coding	7	69	2	1.38867	2.25886	3.12905	0.0441117	0.00566312	0.162255	0.0653997
chr9	131450593	131450692	4217545	0	+	0.484848	(0.476,0.515]	chr9	386766	24	INTRON	INTRON	PRRC2B	ENSG00000288701.1	ENST00000684596.1:ENST00000683519.1:ENST00000682501.1	protein_coding	protein_coding	protein_coding	protein_coding	9	102	2	1.79341	2.25881	2.72421	0.009837	0.00107964	0.0877296	0.0302522
chr1	19911545	19911645	41039	0	+	0.49	(0.476,0.515]	chr1	4832	39	UTR3	UTR3:EXON_MRNA	OTUD3	ENSG00000169914.6	ENST00000375120.4	protein_coding	protein_coding	protein_coding	protein_coding	3	38	2	1.86492	2.2588	2.65268	0.0550347	0.0201975	0.165463	0.121243
chr10	96855895	96855994	4503201	0	+	0.494949	(0.476,0.515]	chr10	414529	217	INTRON	INTRON	LCOR	ENSG00000196233.14	ENST00000676067.1:ENST00000676257.1:ENST00000676187.1:ENST00000675151.1:ENST00000675687.1:ENST00000675251.1:ENST00000676123.1:ENST00000371103.8:ENST00000675471.1:ENST00000421806.4:ENST00000675902.1:ENST00000540664.6:ENST00000676414.1:ENST00000675537.1:ENST00000675117.1:ENST00000675125.1:ENST00000356016.7:ENST00000371097.8:ENST00000676381.1:ENST00000674796.1:ENST00000674725.1:ENST00000675971.1:ENST00000676373.1:ENST00000676314.1:ENST00000675915.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	38	2	1.86492	2.2588	2.65268	0.0550347	0.0201975	0.165463	0.121243
chr16	4877558	4877643	6283616	0	+	0.482353	(0.476,0.515]	chr16	601619	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	UBN1	ENSG00000118900.15	ENST00000262376.11:ENST00000590769.5:ENST00000396658.8:ENST00000589191.1:ENST00000586152.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	38	2	1.86492	2.2588	2.65268	0.0550347	0.0201975	0.165463	0.121243
chr19	16615381	16615481	7150344	0	-	0.48	(0.476,0.515]	chr19	722413	279	INTRON	INTRON	MED26	ENSG00000105085.11	ENST00000263390.8:ENST00000611692.4:ENST00000598608.1:ENST00000601478.1:ENST00000600060.1	protein_coding	protein_coding	protein_coding	protein_coding	3	38	2	1.86492	2.2588	2.65268	0.0550347	0.0201975	0.165463	0.121243
chr18	734347	734445	6939913	0	-	0.438776	(0.408,0.44]	chr18	686461	10	INTRON	INTRON	YES1	ENSG00000176105.14	ENST00000584307.5:ENST00000314574.5:ENST00000577961.5	protein_coding	protein_coding	protein_coding	protein_coding	9	109	2	2.12957	2.258795	2.38802	0.00421806	0.00178825	0.0572185	0.0392749
chr3	185632185	185632282	1585756	0	+	0.309278	(0.28,0.32]	chr3	164216	25	UTR3	UTR3:EXON_MRNA	SENP2	ENSG00000163904.13	ENST00000296257.10	protein_coding	protein_coding	protein_coding	protein_coding	3	48	2	1.83771	2.25873	2.67975	0.0591725	0.0252505	0.189982	0.12011
chr10	68344685	68344783	4638512	0	-	0.346939	(0.32,0.35]	chr10	426523	14	UTR3	UTR3:EXON_MRNA:INTRON	RUFY2	ENSG00000204130.14	ENST00000466493.5:ENST00000484083.5:ENST00000463210.6:ENST00000466187.2:ENST00000602465.6:ENST00000388768.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	44	2	2.13945	2.2586950000000003	2.37794	0.0498601	0.0254517	0.156383	0.133676
chr14	58291807	58291907	5904681	0	-	0.33	(0.32,0.35]	chr14	560840	1	SS3_PROX	SS3_PROX:INTRON	PSMA3-AS1	ENSG00000257621.9	ENST00000554360.5:ENST00000556002.5:ENST00000555275.5:ENST00000554378.5:ENST00000555707.5:ENST00000556400.5:ENST00000557660.5:ENST00000553657.5:ENST00000555037.1:ENST00000551597.6	lncRNA	lncRNA	lncRNA	lncRNA	3	44	2	2.13945	2.2586950000000003	2.37794	0.0498601	0.0254517	0.156383	0.133676
chr22	16785806	16785906	7546257	0	-	0.4	(0.378,0.408]	chr22	771315	10	INTRON	INTRON	XKR3	ENSG00000172967.8	ENST00000331428.5:ENST00000684488.1	protein_coding	protein_coding	protein_coding	protein_coding	7	88	2	2.12071	2.258675	2.39664	0.00601933	0.00480522	0.0700813	0.0602209
chr6	30318672	30318772	3076913	0	-	0.54	(0.515,0.57]	chr6	286153	38	INTRON	INTRON	HCG18	ENSG00000231074.10	ENST00000665953.1:ENST00000670397.1:ENST00000659132.1:ENST00000659836.1:ENST00000669374.1:ENST00000653541.1:ENST00000670071.1:ENST00000666294.1:ENST00000657247.1:ENST00000654996.1:ENST00000653301.1:ENST00000658695.1:ENST00000664861.1:ENST00000668974.1:ENST00000654915.1:ENST00000660593.1:ENST00000687430.1:ENST00000656629.1:ENST00000602550.5:ENST00000687815.1:ENST00000449544.6:ENST00000426882.6:ENST00000438412.6:ENST00000602698.6:ENST00000454129.5:ENST00000444126.5:ENST00000602290.2:ENST00000412685.8:ENST00000602861.6:ENST00000454269.6:ENST00000686575.1:ENST00000687471.1:ENST00000691282.1:ENST00000413358.6:ENST00000602498.1	lncRNA	lncRNA	lncRNA	lncRNA	7	72	2	1.86362	2.2586250000000003	2.65363	0.0164561	0.00105762	0.102235	0.0299618
chr7	6482789	6482889	3478356	0	-	0.41	(0.408,0.44]	chr7	325475	2	SS3_PROX	SS3_PROX:INTRON	DAGLB:KDELR2	ENSG00000164535.15:ENSG00000136240.10	ENST00000436575.5:ENST00000463747.1:ENST00000258739.9:ENST00000490996.1:ENST00000382267.3:ENST00000462052.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	88	2	1.87977	2.258625	2.63748	0.0282738	5.0683e-4	0.125825	0.0202328
chr6	15261555	15261655	2823101	0	+	0.59	(0.57,1]	chr6	265190	122	INTRON	INTRON	JARID2	ENSG00000008083.14	ENST00000341776.7:ENST00000397311.4	protein_coding	protein_coding	protein_coding	protein_coding	11	61	2	1.5281	2.258565	2.98903	0.0165137	1.36729e-4	0.110411	0.0106727
chr4	1706192	1706292	2095164	0	-	0.52	(0.515,0.57]	chr4	207220	21	INTRON	INTRON	SLBP	ENSG00000163950.13	ENST00000489418.6:ENST00000429429.6:ENST00000318386.8:ENST00000483348.5:ENST00000488267.5:ENST00000480936.1	protein_coding	protein_coding	protein_coding	protein_coding	7	72	2	2.02107	2.258535	2.496	0.00910188	0.00225531	0.0809976	0.0436331
chr1	172536782	172536882	254722	0	+	0.47	(0.44,0.476]	chr1	30357	29	INTRON	INTRON	SUCO	ENSG00000094975.14	ENST00000367723.8:ENST00000608151.5:ENST00000616058.4:ENST00000263688.4:ENST00000610051.5:ENST00000608566.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	71	2	1.70242	2.25852	2.81462	0.0282713	0.00247064	0.137721	0.0446195
chr9	128656140	128656240	4358655	0	-	0.49	(0.476,0.515]	chr9	400528	2	SS5_PROX	SS5_PROX:INTRON	DYNC2I2	ENSG00000119333.12	ENST00000372715.7:ENST00000419989.2:ENST00000451652.5:ENST00000480613.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	118	2	2.06898	2.2584299999999997	2.44788	0.0137491	5.68762e-4	0.10247	0.0220433
chr1	207773331	207773429	305122	0	+	0.346939	(0.32,0.35]	chr1	35121	26	INTRON	INTRON	CD46	ENSG00000117335.21	ENST00000695779.1:ENST00000695777.1:ENST00000695778.1:ENST00000496723.2:ENST00000695782.1:ENST00000695781.1:ENST00000695780.1:ENST00000636114.2:ENST00000367042.6:ENST00000322875.8:ENST00000322918.9:ENST00000354848.5:ENST00000357714.5:ENST00000358170.6:ENST00000367041.5:ENST00000367047.5:ENST00000695783.1:ENST00000695784.1:ENST00000469535.5:ENST00000360212.6:ENST00000480003.5:ENST00000695786.1:ENST00000490278.2:ENST00000488596.5:ENST00000471987.1:ENST00000462968.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	44	2	1.88468	2.25839	2.6321	0.0515071	0.0268	0.176696	0.123349
chr22	26535591	26535689	7564513	0	-	0.510204	(0.476,0.515]	chr22	774007	25	INTRON	INTRON	TPST2	ENSG00000128294.16	ENST00000338754.9:ENST00000403880.5:ENST00000398110.6	protein_coding	protein_coding	protein_coding	protein_coding	5	61	2	1.93059	2.25837	2.58615	0.023762	0.00515536	0.118822	0.0650394
chr1	61143527	61143627	128007	0	+	0.45	(0.44,0.476]	chr1	14778	106	INTRON	INTRON	NFIA	ENSG00000162599.17	ENST00000371191.5:ENST00000664495.1:ENST00000476646.5:ENST00000407417.7:ENST00000479364.1:ENST00000371189.8:ENST00000670151.1:ENST00000664149.1:ENST00000662015.1:ENST00000403491.8:ENST00000371187.7:ENST00000485903.6:ENST00000371185.6:ENST00000371184.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	39	2	2.02558	2.25835	2.49112	0.0363567	0.0315968	0.144381	0.138959
chrX	46547950	46548049	7653104	0	+	0.474747	(0.44,0.476]	chrX	782977	16	EXON_LNCRNA	EXON_LNCRNA	ZNF674-AS1	ENSG00000230844.3	ENST00000657382.1:ENST00000421685.2	lncRNA	lncRNA	lncRNA	lncRNA	3	39	2	2.02558	2.25835	2.49112	0.0363567	0.0315968	0.144381	0.138959
chr2	88016450	88016547	1173328	0	-	0.309278	(0.28,0.32]	chr2	125298	2	EXON_SMALL	EXON_SMALL	RNU2-63P	ENSG00000222724.1	ENST00000410792.1	snRNA	snRNA	snRNA	snRNA	6	96	2	2.13258	2.258245	2.38391	0.0122525	0.00884547	0.0969406	0.0794248
chr1	75790939	75791017	144665	0	+	0.410256	(0.408,0.44]	chr1	16329	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RABGGTB	ENSG00000137955.16	ENST00000496055.5:ENST00000485459.5:ENST00000473406.5:ENST00000319942.8:ENST00000470201.5:ENST00000471759.5:ENST00000491266.5:ENST00000461653.5:ENST00000489450.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	29	341	2	2.13101	2.258215	2.38542	3.29823e-4	1.00516e-4	0.0168121	0.00847807
chr16	24782255	24782355	6329745	0	+	0.42	(0.408,0.44]	chr16	605958	34	INTRON	INTRON	TNRC6A	ENSG00000090905.19	ENST00000395799.8:ENST00000315183.11:ENST00000491718.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	46	2	1.93002	2.25813	2.58624	0.0273686	0.022095	0.123904	0.123903
chr7	6400488	6400588	3273287	0	+	0.43	(0.408,0.44]	chr7	304336	3	SS5_PROX	SS5_PROX:INTRON	RAC1	ENSG00000136238.19	ENST00000348035.9:ENST00000356142.4:ENST00000488373.5:ENST00000497741.5:ENST00000473564.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	62	2	1.9831	2.258115	2.53313	0.018491	0.00739595	0.116694	0.074277
chr6	28154511	28154610	2839456	0	+	0.272727	[0,0.28]	chr6	266538	6	UTR3	UTR3:EXON_MRNA	ZKSCAN8	ENSG00000198315.11	ENST00000330236.7	protein_coding	protein_coding	protein_coding	protein_coding	6	105	2	2.20642	2.258105	2.30979	0.0280845	0.00378148	0.125065	0.0562562
chr11	57767327	57767427	4793186	0	+	0.39	(0.378,0.408]	chr11	443717	28	INTRON	INTRON	ENSG00000288534:CTNND1	ENSG00000288534.1:ENSG00000198561.16	ENST00000673781.1:ENST00000673810.1:ENST00000674116.1:ENST00000674060.1:ENST00000524630.5:ENST00000529919.5:ENST00000533189.1:ENST00000682741.1:ENST00000358694.10:ENST00000361332.8:ENST00000361391.10:ENST00000361796.9:ENST00000415361.6:ENST00000426142.6:ENST00000428599.6:ENST00000525902.5:ENST00000526357.5:ENST00000526772.5:ENST00000527467.5:ENST00000528232.5:ENST00000528621.5:ENST00000529526.5:ENST00000529873.5:ENST00000529986.5:ENST00000530094.5:ENST00000530748.5:ENST00000531014.5:ENST00000532245.5:ENST00000532463.5:ENST00000532649.5:ENST00000532787.5:ENST00000532844.5:ENST00000533667.5:ENST00000534579.5:ENST00000399050.10:ENST00000526938.5:ENST00000531007.2:ENST00000674015.1:ENST00000673826.1:ENST00000673683.1:ENST00000674106.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	55	2	1.84831	2.25808	2.66785	0.0224639	0.0172621	0.11692	0.111749
chr8	119794045	119794144	4039665	0	-	0.474747	(0.44,0.476]	chr8	368349	7	UTR3	UTR3:EXON_MRNA:INTRON	TAF2	ENSG00000064313.13	ENST00000378164.7:ENST00000685503.1:ENST00000690808.1:ENST00000692707.1:ENST00000685202.1:ENST00000688645.1:ENST00000685684.1:ENST00000689399.1:ENST00000685876.1:ENST00000689341.1:ENST00000691057.1:ENST00000686098.1:ENST00000690922.1:ENST00000685663.1:ENST00000692518.1:ENST00000688037.1:ENST00000691237.1:ENST00000684862.1:ENST00000685755.1:ENST00000691880.1:ENST00000523904.2:ENST00000689919.1:ENST00000685824.1:ENST00000685993.1:ENST00000692829.1:ENST00000692916.1:ENST00000686879.1:ENST00000685235.1:ENST00000690144.1:ENST00000689164.1:ENST00000691847.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	63	2	2.18344	2.25808	2.33272	0.0129984	0.0102102	0.0991656	0.0850389
chr16	23852362	23852461	6323922	0	+	0.323232	(0.32,0.35]	chr16	605693	146	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000498058.1:ENST00000645517.1:ENST00000498739.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	99	2	1.89094	2.258035	2.62513	0.0185636	0.00156724	0.108861	0.0365592
chr1	15558925	15559025	33123	0	+	0.48	(0.476,0.515]	chr1	4014	101	INTRON	INTRON	DNAJC16	ENSG00000116138.13	ENST00000375849.5:ENST00000475133.5:ENST00000616884.4:ENST00000375838.5:ENST00000375847.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	28	2	2.23335	2.257995	2.28264	0.0634557	0.0534132	0.179876	0.177047
chr1	171528543	171528643	253656	0	+	0.49	(0.476,0.515]	chr1	30152	3	INTRON	INTRON	PRRC2C	ENSG00000117523.18	ENST00000647382.2:ENST00000367742.7:ENST00000476522.5:ENST00000338920.8:ENST00000426496.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	28	2	2.23335	2.257995	2.28264	0.0634557	0.0534132	0.179876	0.177047
chr11	243044	243143	4718097	0	+	0.50505	(0.476,0.515]	chr11	435646	36	INTRON	INTRON	PSMD13	ENSG00000185627.19	ENST00000529372.5:ENST00000532097.6:ENST00000431206.6:ENST00000534590.5:ENST00000528906.5:ENST00000525665.5:ENST00000527047.5:ENST00000352303.9:ENST00000382671.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	51	2	1.92984	2.257995	2.58615	0.0466474	0.00515536	0.151522	0.0650394
chr11	46661019	46661118	4785125	0	+	0.515152	(0.476,0.515]	chr11	442663	11	INTRON	INTRON	ATG13	ENSG00000175224.17	ENST00000529655.5:ENST00000683050.1:ENST00000526508.5:ENST00000530500.5:ENST00000524625.5:ENST00000359513.8:ENST00000528494.5:ENST00000528984.5:ENST00000527907.5:ENST00000533316.1:ENST00000531933.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	28	2	2.23335	2.257995	2.28264	0.0634557	0.0534132	0.179876	0.177047
chr15	94861458	94861558	6105243	0	+	0.51	(0.476,0.515]	chr15	581666	42	INTRON	INTRON	ENSG00000277654	ENSG00000277654.6	ENST00000618611.4:ENST00000648065.1:ENST00000618377.1:ENST00000621842.4:ENST00000615751.4:ENST00000614581.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	2	28	2	2.23335	2.257995	2.28264	0.0634557	0.0534132	0.179876	0.177047
chr16	46970649	46970748	6479901	0	-	0.484848	(0.476,0.515]	chr16	626870	21	INTRON	INTRON	DNAJA2	ENSG00000069345.12	ENST00000317089.10:ENST00000563158.1:ENST00000617000.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	28	2	2.23335	2.257995	2.28264	0.0634557	0.0534132	0.179876	0.177047
chr18	13682505	13682605	6951418	0	-	0.51	(0.476,0.515]	chr18	687675	4	SS3_PROX	SS3_PROX:INTRON	FAM210A	ENSG00000177150.13	ENST00000322247.7:ENST00000651643.1:ENST00000402563.5:ENST00000585785.1:ENST00000588475.1:ENST00000592976.5:ENST00000591269.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	28	2	2.23335	2.257995	2.28264	0.0634557	0.0534132	0.179876	0.177047
chr2	15424768	15424868	1071781	0	-	0.48	(0.476,0.515]	chr2	114361	3	SS3_PROX	SS3_PROX:INTRON	NBAS	ENSG00000151779.13	ENST00000281513.10	protein_coding	protein_coding	protein_coding	protein_coding	2	28	2	2.23335	2.257995	2.28264	0.0634557	0.0534132	0.179876	0.177047
chr21	46386678	46386776	7421858	0	+	0.479592	(0.476,0.515]	chr21	756797	3	INTRON	INTRON	PCNT	ENSG00000160299.18	ENST00000466474.6:ENST00000695525.1:ENST00000695558.1:ENST00000359568.10:ENST00000480896.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	51	2	1.92984	2.257995	2.58615	0.0466474	0.00515536	0.151522	0.0650394
chr4	55607966	55608059	2150412	0	-	0.505376	(0.476,0.515]	chr4	211623	1	INTRON	INTRON	NMU	ENSG00000109255.11	ENST00000511469.5:ENST00000264218.7:ENST00000505262.5:ENST00000507338.1:ENST00000515325.5:ENST00000509371.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	28	2	2.23335	2.257995	2.28264	0.0634557	0.0534132	0.179876	0.177047
chr9	105723919	105724019	4182838	0	+	0.51	(0.476,0.515]	chr9	381513	9	INTRON	INTRON	TMEM38B	ENSG00000095209.12	ENST00000374692.8:ENST00000374688.5:ENST00000435034.5:ENST00000451560.1	protein_coding	protein_coding	protein_coding	protein_coding	2	28	2	2.23335	2.257995	2.28264	0.0634557	0.0534132	0.179876	0.177047
chr11	59793814	59793914	4795532	0	+	0.49	(0.476,0.515]	chr11	443997	3	SS5_PROX	SS5_PROX:INTRON	STX3	ENSG00000166900.17	ENST00000641815.1:ENST00000337979.9:ENST00000533637.5:ENST00000633708.1:ENST00000529177.5:ENST00000528805.1:ENST00000530221.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	39	2	2.13854	2.257925	2.37731	0.0776563	0.0111793	0.196285	0.0937192
chr7	26194770	26194866	3506169	0	-	0.427083	(0.408,0.44]	chr7	327165	7	INTRON	INTRON	HNRNPA2B1	ENSG00000122566.22	ENST00000679318.1:ENST00000677339.1:ENST00000678501.1:ENST00000676903.1:ENST00000608362.2:ENST00000677631.1:ENST00000676749.1:ENST00000677574.1:ENST00000679123.1:ENST00000677906.1:ENST00000476233.2:ENST00000677669.1:ENST00000677321.1:ENST00000678277.1:ENST00000677571.1:ENST00000679124.1:ENST00000676932.1:ENST00000678973.1:ENST00000678183.1:ENST00000679021.1:ENST00000678035.1:ENST00000677075.1:ENST00000678075.1:ENST00000678631.1:ENST00000678998.1:ENST00000490912.6:ENST00000354667.8:ENST00000618183.5:ENST00000677839.1:ENST00000677037.1:ENST00000678449.1:ENST00000679001.1:ENST00000678962.1:ENST00000676524.1:ENST00000678935.1:ENST00000678675.1:ENST00000676746.1:ENST00000356674.8:ENST00000678431.1:ENST00000678697.1:ENST00000678779.1:ENST00000676497.1:ENST00000677396.1:ENST00000360787.8:ENST00000679243.1:ENST00000677656.1:ENST00000463181.5:ENST00000678884.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	37	420	2	1.9027	2.25791	2.61312	8.47331e-4	1.08347e-5	0.0267232	0.00242118
chr12	123205469	123205569	5443781	0	-	0.5	(0.476,0.515]	chr12	520832	17	INTRON	INTRON	MPHOSPH9	ENSG00000051825.15	ENST00000606320.6:ENST00000541076.6:ENST00000545556.6:ENST00000302373.8:ENST00000539024.5:ENST00000539336.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	28	324	2	1.94197	2.2578899999999997	2.57381	0.00129067	1.49354e-5	0.0328679	0.00290818
chr11	47470929	47471029	4949549	0	-	0.42	(0.408,0.44]	chr11	464136	51	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	CELF1	ENSG00000149187.19	ENST00000310513.10:ENST00000687097.1:ENST00000395290.6:ENST00000358597.7:ENST00000395292.6:ENST00000361904.7:ENST00000539455.5:ENST00000531165.5:ENST00000532048.5:ENST00000524648.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	118	2	2.23639	2.257825	2.27926	0.00445002	9.96556e-4	0.0592079	0.0290732
chr12	68630858	68630958	5161406	0	+	0.45	(0.44,0.476]	chr12	488585	56	INTRON	INTRON	RAP1B	ENSG00000127314.18	ENST00000460800.5:ENST00000393436.9:ENST00000250559.14:ENST00000425247.6:ENST00000501412.2:ENST00000450214.6:ENST00000463493.5:ENST00000537460.5:ENST00000341355.9:ENST00000538283.5:ENST00000541167.5:ENST00000422358.6:ENST00000489473.6:ENST00000545270.5:ENST00000538980.5:ENST00000543393.5:ENST00000542018.5:ENST00000540209.5:ENST00000378985.7:ENST00000453560.6:ENST00000534899.5:ENST00000542145.5:ENST00000539091.5:ENST00000535492.5:ENST00000540781.5:ENST00000485252.6:ENST00000538877.5:ENST00000541386.5:ENST00000543697.5:ENST00000545720.6:ENST00000541216.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	19	196	2	1.72171	2.25782	2.79393	0.00292749	1.57972e-4	0.0495836	0.0114628
chr4	39956041	39956141	2131986	0	-	0.45	(0.44,0.476]	chr4	210242	275	INTRON	INTRON	PDS5A	ENSG00000121892.15	ENST00000303538.13:ENST00000503396.5	protein_coding	protein_coding	protein_coding	protein_coding	4	51	2	1.96602	2.25773	2.54944	0.0426807	0.00591346	0.148082	0.0694038
chr1	202766298	202766396	620317	0	-	0.510204	(0.476,0.515]	chr1	73634	23	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	KDM5B	ENSG00000117139.18	ENST00000367265.9:ENST00000648338.1:ENST00000649542.1:ENST00000647757.1:ENST00000367264.7:ENST00000648473.1:ENST00000650569.1:ENST00000648056.1:ENST00000649770.1:ENST00000648469.1:ENST00000650417.1:ENST00000235790.9:ENST00000650422.1:ENST00000648738.1:ENST00000648744.1:ENST00000648958.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	51	2	2.19809	2.257675	2.31726	0.020317	0.015077	0.121522	0.0994339
chr13	110894930	110895028	5650440	0	-	0.357143	(0.35,0.378]	chr13	538355	4	EXON_LNCRNA	EXON_LNCRNA:INTRON	ANKRD10:ANKRD10-IT1	ENSG00000088448.14:ENSG00000229152.2	ENST00000267339.6:ENST00000489973.6:ENST00000310847.8:ENST00000465753.1:ENST00000475809.1:ENST00000494859.5:ENST00000426991.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:nonsense_mediated_decay:lncRNA:processed_transcript	6	81	2	1.91706	2.257665	2.59827	0.026412	0.0016492	0.122506	0.0375159
chr6	44137789	44137884	2872438	0	+	0.463158	(0.44,0.476]	chr6	272407	10	INTRON	INTRON	TMEM63B	ENSG00000137216.19	ENST00000259746.13:ENST00000323267.11:ENST00000532634.5:ENST00000534326.5:ENST00000525294.5:ENST00000371893.6:ENST00000497371.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	52	2	1.65297	2.25764	2.86231	0.0331814	0.012214	0.145918	0.0910127
chr8	37886797	37886896	3935818	0	-	0.373737	(0.35,0.378]	chr8	360576	88	INTRON	INTRON	RAB11FIP1	ENSG00000156675.16	ENST00000330843.9:ENST00000287263.8:ENST00000522727.5	protein_coding	protein_coding	protein_coding	protein_coding	8	93	2	1.81613	2.257585	2.69904	0.00932362	0.00438476	0.085606	0.0585064
chr11	3857408	3857508	4723478	0	+	0.4	(0.378,0.408]	chr11	437119	6	INTRON	INTRON	STIM1	ENSG00000167323.12	ENST00000525403.5:ENST00000526596.2:ENST00000300737.8:ENST00000616714.4:ENST00000527651.5	protein_coding	protein_coding	protein_coding	protein_coding	6	73	2	2.12071	2.257575	2.39444	0.0122858	0.00601933	0.091087	0.0700813
chr15	49221055	49221154	6019626	0	+	0.242424	[0,0.28]	chr15	573707	34	INTRON	INTRON	GALK2	ENSG00000156958.15	ENST00000559883.5:ENST00000559963.5:ENST00000327171.7:ENST00000560654.5:ENST00000558775.5:ENST00000559040.1:ENST00000396509.6:ENST00000558956.5:ENST00000559208.5:ENST00000560031.6:ENST00000560119.5:ENST00000558145.5:ENST00000544523.5:ENST00000560138.5:ENST00000559423.5:ENST00000559454.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	124	2	2.20536	2.257575	2.30979	0.0138742	0.00378148	0.0954405	0.0562562
chr4	102817559	102817659	2213260	0	-	0.38	(0.378,0.408]	chr4	216759	47	INTRON	INTRON	UBE2D3	ENSG00000109332.20	ENST00000453744.7:ENST00000394804.6:ENST00000394803.9:ENST00000394801.8:ENST00000343106.9:ENST00000503742.5:ENST00000321805.11:ENST00000350435.11:ENST00000338145.7:ENST00000349311.12:ENST00000504211.5:ENST00000357194.10:ENST00000505207.5:ENST00000507845.5:ENST00000502404.5:ENST00000508635.5:ENST00000505307.5:ENST00000510129.5:ENST00000508476.5:ENST00000502563.5:ENST00000508238.5:ENST00000514755.5:ENST00000508974.5:ENST00000502690.5:ENST00000508818.5:ENST00000503418.5:ENST00000508249.1:ENST00000513098.5:ENST00000503282.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	80	2	1.91219	2.257575	2.60296	0.0267851	0.00434774	0.123349	0.0602259
chr2	28931841	28931940	725563	0	+	0.444444	(0.44,0.476]	chr2	83854	13	INTRON	INTRON	WDR43	ENSG00000163811.12	ENST00000407426.8:ENST00000466067.1:ENST00000446643.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	61	2	2.12992	2.257555	2.38519	0.012193	0.010975	0.092635	0.0910127
chr3	25763080	25763177	1642637	0	-	0.319588	(0.28,0.32]	chr3	168672	10	INTRON	INTRON	NGLY1	ENSG00000151092.18	ENST00000280700.10:ENST00000428257.5:ENST00000675217.1:ENST00000676225.1:ENST00000493324.5:ENST00000396649.7:ENST00000308710.9:ENST00000280699.13:ENST00000674841.1:ENST00000675234.1:ENST00000463611.2:ENST00000417874.6:ENST00000427041.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	78	2	2.14534	2.257485	2.36963	0.0157022	0.0117054	0.101453	0.0962115
chr5	139592270	139592370	2500813	0	+	0.43	(0.408,0.44]	chr5	239026	295	INTRON	INTRON	UBE2D2	ENSG00000131508.16	ENST00000511725.5:ENST00000505007.5:ENST00000398733.8:ENST00000510470.1:ENST00000398734.8:ENST00000505548.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	54	2	1.92871	2.257475	2.58624	0.0273686	0.0127189	0.123904	0.0986242
chr20	35733196	35733294	7336461	0	-	0.540816	(0.515,0.57]	chr20	747476	5	INTRON	INTRON	RBM39	ENSG00000131051.24	ENST00000253363.11:ENST00000639702.1:ENST00000656873.1:ENST00000463004.5:ENST00000361162.10:ENST00000461283.5:ENST00000403542.6:ENST00000338163.10:ENST00000528062.7:ENST00000429968.5:ENST00000444878.5:ENST00000665058.1:ENST00000374038.7:ENST00000412738.5:ENST00000434927.5:ENST00000425184.5:ENST00000481037.5:ENST00000455343.5:ENST00000416108.5:ENST00000426951.5:ENST00000477334.1:ENST00000442447.5:ENST00000449489.5:ENST00000433027.5:ENST00000487604.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	16	158	2	2.22725	2.257455	2.28766	9.24877e-4	2.53692e-4	0.0278396	0.0141969
chr3	37244022	37244122	1395758	0	+	0.53	(0.515,0.57]	chr3	146300	4	SS5_PROX	SS5_PROX:INTRON	GOLGA4	ENSG00000144674.17	ENST00000435830.6:ENST00000444882.5:ENST00000356847.8:ENST00000450863.6:ENST00000361924.7:ENST00000429018.5:ENST00000431105.1:ENST00000419177.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	130	2	2.14437	2.2574300000000003	2.37049	0.00207895	3.23495e-4	0.0411801	0.0159645
chr1	1814562	1814661	362065	0	-	0.474747	(0.44,0.476]	chr1	42277	77	INTRON	INTRON	GNB1	ENSG00000078369.18	ENST00000610897.4:ENST00000615252.4:ENST00000378609.9:ENST00000471354.1:ENST00000439272.6:ENST00000434686.6:ENST00000437146.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	38	2	1.77101	2.257365	2.74372	0.0693975	0.0153007	0.184298	0.108569
chr7	105541303	105541402	3375777	0	+	0.464646	(0.44,0.476]	chr7	316053	42	INTRON	INTRON	RINT1	ENSG00000135249.8	ENST00000467392.5:ENST00000482041.5:ENST00000493041.5:ENST00000257700.7:ENST00000497979.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	38	2	1.77101	2.257365	2.74372	0.0693975	0.0153007	0.184298	0.108569
chr22	20940530	20940630	7480749	0	+	0.35	(0.32,0.35]	chr22	763096	59	INTRON	INTRON	CRKL	ENSG00000099942.13	ENST00000354336.8:ENST00000411769.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	167	2	2.07271	2.25736	2.44201	0.00457295	5.20021e-4	0.0595107	0.0204523
chr7	148875739	148875838	3670678	0	-	0.393939	(0.378,0.408]	chr7	340632	45	INTRON	INTRON	EZH2	ENSG00000106462.12	ENST00000683292.1:ENST00000320356.7:ENST00000492143.5:ENST00000478654.5:ENST00000350995.6:ENST00000460911.5:ENST00000683744.1:ENST00000682317.1:ENST00000682263.1:ENST00000476773.5:ENST00000483967.5:ENST00000498186.5:ENST00000483012.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	64	2	2.16303	2.257355	2.35168	0.0252473	0.0046563	0.12011	0.0629753
chr12	50405410	50405510	5136378	0	+	0.26	[0,0.28]	chr12	484352	22	INTRON	INTRON	LARP4	ENSG00000161813.23	ENST00000550522.5:ENST00000293618.12:ENST00000429001.7:ENST00000398473.7:ENST00000548174.5:ENST00000548697.5:ENST00000548993.5:ENST00000522085.5:ENST00000518444.5:ENST00000551886.5:ENST00000523389.5:ENST00000518561.5:ENST00000347328.9:ENST00000550260.1:ENST00000517559.5:ENST00000552445.1	protein_coding	protein_coding	protein_coding	protein_coding	4	67	2	1.55741	2.2573499999999997	2.95729	0.0792968	0.0101824	0.199711	0.089002
chr5	10421430	10421530	2318355	0	+	0.36	(0.35,0.378]	chr5	224739	1	SS3_PROX	SS3_PROX:INTRON	MARCHF6	ENSG00000145495.16	ENST00000274140.10:ENST00000449913.6:ENST00000511802.5:ENST00000503788.5:ENST00000510792.1:ENST00000512449.5:ENST00000505253.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	11	113	2	1.39029	2.25732	3.12435	0.026172	7.66038e-4	0.133676	0.025385
chr3	180922284	180922383	1568701	0	+	0.353535	(0.35,0.378]	chr3	162365	63	INTRON	INTRON	FXR1	ENSG00000114416.18	ENST00000469882.5:ENST00000484790.5:ENST00000465551.5:ENST00000305586.11:ENST00000475315.5:ENST00000491674.1:ENST00000357559.9:ENST00000468861.5:ENST00000491062.5:ENST00000479176.5:ENST00000445140.6:ENST00000472339.5:ENST00000484958.5:ENST00000480918.5:ENST00000484042.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	80	2	1.30005	2.257305	3.21456	0.0415498	0.00420814	0.161736	0.0572185
chr6	169709018	169709118	3267186	0	-	0.29	(0.28,0.32]	chr6	303278	21	UTR3	UTR3:EXON_MRNA:INTRON	PHF10	ENSG00000130024.15	ENST00000339209.9:ENST00000366780.8:ENST00000621772.4:ENST00000480008.1:ENST00000612128.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	90	2	1.70122	2.25728	2.81334	0.0356118	0.00248627	0.138061	0.0461207
chr16	85534475	85534575	6415175	0	+	0.5	(0.476,0.515]	chr16	615465	1752	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	5	57	2	1.86182	2.25725	2.65268	0.0201975	0.0178986	0.121243	0.106365
chr6	47497514	47497613	2873762	0	+	0.444444	(0.44,0.476]	chr6	272725	85	INTRON	INTRON	CD2AP	ENSG00000198087.7	ENST00000359314.5	protein_coding	protein_coding	protein_coding	protein_coding	6	70	2	2.08453	2.257245	2.42996	0.0104804	0.00689	0.0855777	0.0750118
chr9	112260244	112260343	4317222	0	-	0.242424	[0,0.28]	chr9	397054	71	INTRON	INTRON	PTBP3	ENSG00000119314.16	ENST00000334318.10:ENST00000458258.5:ENST00000374257.6:ENST00000374255.6:ENST00000343327.6	protein_coding	protein_coding	protein_coding	protein_coding	4	66	2	1.91898	2.25723	2.59548	0.0346067	0.0266433	0.136649	0.134413
chr7	111370474	111370574	3622187	0	-	0.33	(0.32,0.35]	chr7	337093	4066	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	138	2	1.8916	2.257145	2.62269	0.00936694	6.6835e-4	0.0817766	0.0234462
chr21	43790579	43790666	7413621	0	+	0.436782	(0.408,0.44]	chr21	755606	2	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	RRP1	ENSG00000160214.13	ENST00000475534.5:ENST00000483896.5:ENST00000497547.2:ENST00000492638.1:ENST00000473988.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	41	2	2.21857	2.257135	2.2957	0.0516458	0.0209591	0.176696	0.112046
chr1	179223043	179223143	593013	0	-	0.48	(0.476,0.515]	chr1	71074	801	INTRON	INTRON	ABL2	ENSG00000143322.21	ENST00000502732.6:ENST00000367623.8:ENST00000507173.5:ENST00000511413.5:ENST00000668691.1:ENST00000392043.4:ENST00000660584.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	70	2	1.78917	2.25712	2.72507	0.022887	0.0029369	0.118056	0.0496505
chr1	245911133	245911233	674735	0	-	0.36	(0.35,0.378]	chr1	79681	469	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000366517.5:ENST00000366516.5:ENST00000490107.6:ENST00000470510.5:ENST00000493441.5:ENST00000488153.5:ENST00000492487.5:ENST00000391836.3:ENST00000464398.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	41	2	2.04358	2.2571149999999998	2.47065	0.0386172	0.0329533	0.145171	0.142656
chr13	95238914	95239014	5639248	0	-	0.36	(0.35,0.378]	chr13	537157	37	INTRON	INTRON	ABCC4	ENSG00000125257.16	ENST00000645237.2:ENST00000643051.1:ENST00000643842.1:ENST00000646439.1:ENST00000643816.1:ENST00000536256.3:ENST00000643556.1:ENST00000629385.1:ENST00000642524.1:ENST00000645532.1:ENST00000644471.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	41	2	2.04358	2.2571149999999998	2.47065	0.0386172	0.0329533	0.145171	0.142656
chr1	155910271	155910360	564608	0	-	0.303371	(0.28,0.32]	chr1	67420	3	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	RIT1	ENSG00000143622.11	ENST00000368323.8:ENST00000651853.1:ENST00000539040.5:ENST00000368322.7:ENST00000461050.5:ENST00000609492.1:ENST00000651833.1:ENST00000650659.1:ENST00000462687.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	79	2	2.09794	2.2570949999999996	2.41625	0.0340483	0.00419958	0.134863	0.0592209
chr17	7487952	7488052	6553346	0	+	0.45	(0.44,0.476]	chr17	636529	27	INTRON	INTRON	POLR2A	ENSG00000181222.19	ENST00000617998.6:ENST00000674977.2:ENST00000572844.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	70	2	1.84134	2.25708	2.67282	0.0175428	0.00433875	0.11319	0.0579868
chr2	127742949	127743049	1225192	0	-	0.33	(0.32,0.35]	chr2	130486	45	INTRON	INTRON	WDR33	ENSG00000136709.12	ENST00000322313.9:ENST00000436787.5:ENST00000393006.5	protein_coding	protein_coding	protein_coding	protein_coding	4	53	2	1.61669	2.25706	2.89743	0.0578816	0.0127608	0.188651	0.0926667
chr4	39847568	39847667	2130863	0	-	0.323232	(0.32,0.35]	chr4	210084	18	EXON_MRNA	EXON_MRNA:INTRON	PDS5A	ENSG00000121892.15	ENST00000303538.13:ENST00000507766.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	53	2	1.61669	2.25706	2.89743	0.0578816	0.0127608	0.188651	0.0926667
chr2	87503824	87503924	826412	0	+	0.38	(0.378,0.408]	chr2	92441	2	SS5_PROX	SS5_PROX:INTRON	CYTOR:ENSG00000284879	ENSG00000222041.12:ENSG00000284879.1	ENST00000642796.1:ENST00000643589.1:ENST00000642451.1:ENST00000646386.1:ENST00000644478.1:ENST00000409139.6:ENST00000331944.10:ENST00000644125.1:ENST00000643743.1:ENST00000644577.1:ENST00000643276.1:ENST00000409898.2:ENST00000419680.6:ENST00000644976.1:ENST00000643070.1:ENST00000646855.1:ENST00000414584.1:ENST00000455131.5:ENST00000646636.1:ENST00000642293.1:ENST00000423846.5:ENST00000644040.1:ENST00000645138.1:ENST00000437561.2:ENST00000629257.1:ENST00000645729.1	lncRNA	lncRNA	lncRNA	lncRNA	5	64	2	1.99678	2.257055	2.51733	0.0177959	0.00808319	0.113452	0.0766625
chr6	10791654	10791753	2811119	0	+	0.373737	(0.35,0.378]	chr6	264506	211	INTRON	INTRON	TMEM14B	ENSG00000137210.14	ENST00000463448.5:ENST00000473166.5:ENST00000460341.5:ENST00000473807.5:ENST00000463100.5:ENST00000478732.1:ENST00000467229.1:ENST00000489137.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	3	41	2	1.9755	2.25703	2.53856	0.0398617	0.0326077	0.161534	0.133687
chr11	86014669	86014769	5014290	0	-	0.28	[0,0.28]	chr11	472989	4	SS5_PROX	SS5_PROX:INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000630913.2:ENST00000528398.5:ENST00000356360.9:ENST00000534412.5:ENST00000531771.5:ENST00000531558.1:ENST00000531930.5:ENST00000532041.5:ENST00000525162.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	127	2	1.99816	2.2569999999999997	2.51584	0.0115397	0.00581682	0.0889104	0.0687084
chr14	34870301	34870400	5868394	0	-	0.343434	(0.32,0.35]	chr14	557415	76	INTRON	INTRON	BAZ1A	ENSG00000198604.11	ENST00000358716.8:ENST00000360310.6:ENST00000382422.6	protein_coding	protein_coding	protein_coding	protein_coding	4	55	2	1.73318	2.256955	2.78073	0.0462868	0.01481	0.150684	0.106702
chr6	87222171	87222269	2913931	0	+	0.367347	(0.35,0.378]	chr6	275307	31	INTRON	INTRON	ZNF292	ENSG00000188994.13	ENST00000369577.8:ENST00000369578.6:ENST00000518845.1:ENST00000339907.8:ENST00000496806.2:ENST00000524067.5:ENST00000485016.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	63	2	1.34146	2.25695	3.17244	0.0634598	0.00487788	0.19806000000000001	0.0607461
chr16	85420223	85420323	6414032	0	+	0.53	(0.515,0.57]	chr16	615465	609	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	7	74	2	2.22166	2.256945	2.29223	0.00735516	0.00290031	0.0765982	0.047789
chrX	121206133	121206233	7715251	0	+	0.32	(0.28,0.32]	chrX	789390	199	INTRON	INTRON	ENSG00000286163	ENSG00000286163.1	ENST00000651788.1	lncRNA	lncRNA	lncRNA	lncRNA	4	61	2	2.25298	2.25694	2.2609	0.0671429	0.00791652	0.183051	0.0797304
chr5	181240345	181240409	2783882	0	-	0.453125	(0.44,0.476]	chr5	262928	1	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	RACK1	ENSG00000204628.12	ENST00000512805.6:ENST00000511473.5:ENST00000504325.5:ENST00000507756.5:ENST00000502905.5:ENST00000511566.5:ENST00000376817.8:ENST00000508682.5:ENST00000504128.5:ENST00000504726.1:ENST00000511900.5:ENST00000513060.5:ENST00000512968.5:ENST00000510199.5:ENST00000502844.5:ENST00000507000.5:ENST00000514183.5:ENST00000502548.5:ENST00000502890.5:ENST00000503494.5:ENST00000506312.3:ENST00000503081.1:ENST00000508044.1:ENST00000515417.5:ENST00000513027.3:ENST00000626067.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	96	2	1.69028	2.256895	2.82351	0.013201	0.00191049	0.0940535	0.0403772
chr10	5769487	5769586	4544475	0	-	0.444444	(0.44,0.476]	chr10	419766	2	INTRON	INTRON	GDI2	ENSG00000057608.17	ENST00000380191.9:ENST00000447751.5:ENST00000380181.7	protein_coding	protein_coding	protein_coding	protein_coding	9	107	2	1.98356	2.256885	2.53021	0.00757232	8.87528e-4	0.0749063	0.0271952
chr2	113742676	113742776	1216682	0	-	0.35	(0.32,0.35]	chr2	129514	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	SLC35F5	ENSG00000115084.15	ENST00000245680.7:ENST00000409106.5:ENST00000409342.1:ENST00000498768.1:ENST00000460863.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	120	2	1.90543	2.2568799999999998	2.60833	0.00676396	0.00240033	0.0741642	0.0440612
chr11	3393259	3393359	4722963	0	+	0.34	(0.32,0.35]	chr11	436991	1	SS5_PROX	SS5_PROX:INTRON	TSSC2	ENSG00000223756.8	ENST00000685598.1:ENST00000691197.1:ENST00000533775.6:ENST00000690471.1:ENST00000529482.5:ENST00000693396.1:ENST00000685130.1:ENST00000526284.5:ENST00000526488.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	10	143	2	2.15523	2.256865	2.3585	0.00338289	0.00198682	0.0534907	0.0404678
chr6	154737893	154737991	3001861	0	+	0.336735	(0.32,0.35]	chr6	280731	36	INTRON	INTRON	SCAF8	ENSG00000213079.10	ENST00000367186.7:ENST00000417268.3:ENST00000461219.5:ENST00000367178.8:ENST00000464628.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	62	2	1.88141	2.256755	2.6321	0.0268	0.0161424	0.123349	0.109464
chr1	46273465	46273544	96480	0	+	0.481013	(0.476,0.515]	chr1	12939	1	EXON_MRNA	EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RAD54L	ENSG00000085999.13	ENST00000442598.5:ENST00000671528.1:ENST00000371975.9:ENST00000655446.1:ENST00000476687.2:ENST00000664182.1:ENST00000661701.1:ENST00000488942.5:ENST00000459678.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	75	2	2.06898	2.2566949999999997	2.44441	0.0137491	0.0036718	0.10247	0.0535094
chr1	229544344	229544443	653626	0	-	0.424242	(0.408,0.44]	chr1	77476	16	INTRON	INTRON	ABCB10	ENSG00000135776.5	ENST00000344517.5	protein_coding	protein_coding	protein_coding	protein_coding	12	135	2	1.94811	2.256555	2.565	0.00268797	0.00103673	0.0479115	0.0292734
chr22	21831336	21831436	7561023	0	-	0.43	(0.408,0.44]	chr22	773388	231	INTRON	INTRON	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	8	97	2	2.00842	2.25633	2.50424	0.0108512	0.00101099	0.0873034	0.0293364
chr2	32514989	32515086	732426	0	+	0.402062	(0.378,0.408]	chr2	84577	1	CDS	CDS:EXON_MRNA	BIRC6	ENSG00000115760.15	ENST00000421745.7:ENST00000648282.1	protein_coding	protein_coding	protein_coding	protein_coding	11	131	2	2.11481	2.2563050000000002	2.3978	0.00235448	0.00162221	0.0436213	0.0369859
chr11	47752567	47752643	4951266	0	-	0.565789	(0.515,0.57]	chr11	464435	3	SS5_PROX	SS5_PROX:INTRON	FNBP4	ENSG00000109920.13	ENST00000263773.10:ENST00000534003.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	39	2	1.67758	2.256295	2.83501	0.0471728	0.0117686	0.168737	0.0894475
chr6	157026636	157026735	3009660	0	+	0.40404	(0.378,0.408]	chr6	281133	20	INTRON	INTRON	ARID1B	ENSG00000049618.24	ENST00000346085.10:ENST00000636930.2:ENST00000647938.1:ENST00000350026.10:ENST00000674298.1:ENST00000674190.1:ENST00000414678.7:ENST00000319584.11:ENST00000452544.2:ENST00000637887.1:ENST00000635849.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	65	2	2.10212	2.256245	2.41037	0.0141232	0.0100185	0.0959618	0.0880217
chr3	152446403	152446503	1536772	0	+	0.36	(0.35,0.378]	chr3	160030	3	SS3_PROX	SS3_PROX:INTRON	MBNL1	ENSG00000152601.18	ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000324210.10:ENST00000493459.5:ENST00000545754.5:ENST00000357472.7:ENST00000324196.9:ENST00000498502.5:ENST00000463374.5:ENST00000485910.5:ENST00000465907.6:ENST00000492948.5:ENST00000485509.5:ENST00000464596.5:ENST00000478535.1:ENST00000460166.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	56	2	1.87717	2.25622	2.63527	0.0555068	0.00443588	0.165463	0.061054
chr4	65243	65343	1905409	0	+	0.37	(0.35,0.378]	chr4	191003	47	INTRON	INTRON	ZNF595	ENSG00000272602.6	ENST00000608255.2:ENST00000609518.5:ENST00000509152.3:ENST00000610261.6	protein_coding	protein_coding	protein_coding	protein_coding	12	156	2	2.09523	2.256165	2.4171	0.00275224	8.92719e-4	0.0469265	0.0273457
chr5	65944190	65944290	2371020	0	+	0.3	(0.28,0.32]	chr5	228472	170	INTRON	INTRON	ERBIN	ENSG00000112851.15	ENST00000380943.6:ENST00000507490.1:ENST00000416865.6:ENST00000380935.5:ENST00000284037.10:ENST00000380938.6:ENST00000511297.5:ENST00000506030.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	131	2	1.92515	2.25615	2.58715	0.00673928	0.00300718	0.0739405	0.0493883
chr7	32541152	32541251	3303691	0	+	0.474747	(0.44,0.476]	chr7	306762	20	INTRON	INTRON	AVL9	ENSG00000105778.20	ENST00000485228.1:ENST00000318709.9:ENST00000409301.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	47	2	2.12992	2.256055	2.38219	0.045456	0.010975	0.149888	0.092635
chr17	42506920	42507019	6611793	0	+	0.414141	(0.408,0.44]	chr17	644172	37	INTRON	INTRON	ATP6V0A1	ENSG00000033627.17	ENST00000393829.6:ENST00000343619.9:ENST00000537728.5:ENST00000264649.10:ENST00000585525.5:ENST00000544137.5:ENST00000587510.5:ENST00000586201.5:ENST00000588138.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	120	2	2.17484	2.2560200000000004	2.3372	0.003472	0.00122451	0.052042	0.0324961
chr1	205120757	205120856	622421	0	-	0.454545	(0.44,0.476]	chr1	74020	45	INTRON	INTRON	RBBP5	ENSG00000117222.14	ENST00000367164.1:ENST00000264515.11:ENST00000484379.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	84	2	2.2193	2.25594	2.29258	0.00896114	0.00279559	0.0800073	0.0488779
chr3	196903810	196903910	1596804	0	+	0.46	(0.44,0.476]	chr3	165414	2	SS5_PROX	SS5_PROX:INTRON	SENP5	ENSG00000119231.11	ENST00000445299.6:ENST00000323460.10:ENST00000419026.5:ENST00000489744.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	84	2	2.15726	2.25586	2.35446	0.00536475	0.00508124	0.0646039	0.0642754
chr1	10110070	10110169	19908	0	+	0.363636	(0.35,0.378]	chr1	1882	23	INTRON	INTRON	UBE4B	ENSG00000130939.20	ENST00000672724.1:ENST00000253251.12:ENST00000343090.11	protein_coding	protein_coding	protein_coding	protein_coding	4	56	2	2.23043	2.25584	2.28125	0.0187487	0.0182271	0.117523	0.107842
chr3	194453405	194453505	1890856	0	-	0.43	(0.408,0.44]	chr3	189203	3	SS5_PROX	SS5_PROX:INTRON	ATP13A3	ENSG00000133657.17	ENST00000687055.1:ENST00000645538.1:ENST00000645319.2:ENST00000690810.1:ENST00000642744.2:ENST00000439040.6:ENST00000485194.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	19	217	2	2.25169	2.2558350000000003	2.25998	0.001078	1.88587e-4	0.030243	0.0119565
chr3	177191667	177191767	1872391	0	-	0.35	(0.32,0.35]	chr3	187438	204	INTRON	INTRON	TBL1XR1	ENSG00000177565.18	ENST00000457928.7:ENST00000430069.5:ENST00000673974.1:ENST00000352800.10:ENST00000422442.6:ENST00000428970.5:ENST00000424913.5:ENST00000437738.5:ENST00000431421.5:ENST00000635794.1:ENST00000630796.2:ENST00000450267.5:ENST00000630833.2:ENST00000431674.5:ENST00000422066.5:ENST00000443315.5:ENST00000627825.2:ENST00000427349.5:ENST00000413084.5:ENST00000637137.1:ENST00000491623.2:ENST00000637544.1:ENST00000636187.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	114	2	1.33779	2.25577	3.17375	0.0707935	9.64618e-5	0.184528	0.00826486
chr3	37305828	37305928	1396390	0	+	0.38	(0.378,0.408]	chr3	146385	31	INTRON	INTRON	GOLGA4	ENSG00000144674.17	ENST00000435830.6:ENST00000444882.5:ENST00000356847.8:ENST00000450863.6:ENST00000361924.7:ENST00000429018.5:ENST00000437131.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	81	2	1.95534	2.255705	2.55607	0.00731058	0.00704647	0.076234	0.0718189
chr1	6583568	6583665	5348	0	+	0.484536	(0.476,0.515]	chr1	1034	9	INTRON	INTRON	ZBTB48	ENSG00000204859.13	ENST00000377674.9:ENST00000488936.1	protein_coding	protein_coding	protein_coding	protein_coding	11	129	2	1.97669	2.255635	2.53458	0.0053159	4.37058e-4	0.0639031	0.0188334
chr5	133100981	133101073	2488509	0	+	0.521739	(0.515,0.57]	chr5	237558	10	INTRON	INTRON	HSPA4	ENSG00000170606.16	ENST00000304858.7	protein_coding	protein_coding	protein_coding	protein_coding	4	41	2	2.17039	2.25563	2.34087	0.0469761	0.00900252	0.151917	0.0851009
chrX	151407896	151407993	7735219	0	+	0.56701	(0.515,0.57]	chrX	791463	30	UTR3	UTR3:EXON_MRNA	VMA21	ENSG00000160131.14	ENST00000330374.7	protein_coding	protein_coding	protein_coding	protein_coding	44	436	2	2.16703	2.2555899999999998	2.34415	6.69451e-5	2.79469e-5	0.0067809	0.00435403
chr5	181249028	181249127	2563357	0	+	0.434343	(0.408,0.44]	chr5	245312	7	INTRON	INTRON	CTC-338M12.4	ENSG00000233937.8	ENST00000506340.3:ENST00000505151.6:ENST00000511331.5:ENST00000417281.2	lncRNA	lncRNA	lncRNA	lncRNA	9	92	2	1.50103	2.255565	3.0101	0.0237058	0.00109848	0.129075	0.0304585
chr6	169715518	169715607	3267254	0	-	0.393258	(0.378,0.408]	chr6	303296	3	SS5_PROX	SS5_PROX:INTRON	PHF10	ENSG00000130024.15	ENST00000339209.9:ENST00000366780.8:ENST00000621772.4:ENST00000480008.1:ENST00000612128.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	124	2	2.1382	2.25556	2.37292	0.00426428	0.00105162	0.0573912	0.0299022
chr1	28918071	28918171	58991	0	+	0.4	(0.378,0.408]	chr1	7621	29	INTRON	INTRON	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000647918.1:ENST00000646800.1:ENST00000644342.1:ENST00000646189.1:ENST00000482464.6:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000646260.1:ENST00000373798.5:ENST00000644600.1:ENST00000649674.1:ENST00000643173.1:ENST00000343067.9:ENST00000644780.1:ENST00000650265.1:ENST00000648181.1:ENST00000643604.1:ENST00000648891.1:ENST00000373797.2:ENST00000349460.9:ENST00000645184.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	81	2	1.70953	2.25554	2.80155	0.0190881	0.00278307	0.119229	0.0469265
chr7	105371252	105371351	3603729	0	-	0.383838	(0.378,0.408]	chr7	336161	643	INTRON	INTRON	SRPK2	ENSG00000135250.17	ENST00000393651.8:ENST00000482897.5:ENST00000460391.5:ENST00000462282.5:ENST00000465112.5:ENST00000482862.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	81	2	1.70953	2.25554	2.80155	0.0190881	0.00278307	0.119229	0.0469265
chr2	101699937	101700037	836081	0	+	0.42	(0.408,0.44]	chr2	93900	10	INTRON	INTRON	MAP4K4	ENSG00000071054.17	ENST00000427603.5:ENST00000324219.9:ENST00000350878.9:ENST00000425019.6:ENST00000625522.3:ENST00000413150.6:ENST00000634702.1:ENST00000456652.5:ENST00000347699.8:ENST00000417294.5	protein_coding	protein_coding	protein_coding	protein_coding	5	58	2	1.84516	2.2554749999999997	2.66579	0.0193431	0.019342	0.119831	0.108861
chr7	119842941	119843041	3629770	0	-	0.5	(0.476,0.515]	chr7	337335	417	INTRON	INTRON	LINC02476	ENSG00000225546.6	ENST00000660268.1:ENST00000431071.5:ENST00000426413.2	lncRNA	lncRNA	lncRNA	lncRNA	5	61	2	1.97402	2.255365	2.53671	0.0206778	0.00624027	0.110999	0.0718843
chr2	169836049	169836149	908229	0	+	0.31	(0.28,0.32]	chr2	100222	76	INTRON	INTRON	UBR3	ENSG00000144357.18	ENST00000272793.11	protein_coding	protein_coding	protein_coding	protein_coding	9	98	2	1.59221	2.25536	2.91851	0.0157727	0.0130672	0.109464	0.093385
chr3	179574931	179575024	1567579	0	+	0.333333	(0.32,0.35]	chr3	162195	6	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ACTL6A	ENSG00000136518.17	ENST00000450518.6:ENST00000392662.5:ENST00000468767.6:ENST00000429709.7:ENST00000487978.5:ENST00000486471.1:ENST00000467383.1:ENST00000467615.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	54	2	2.06478	2.25529	2.4458	0.0425977	0.0147778	0.148082	0.106702
chr7	139083679	139083779	3656158	0	-	0.38	(0.378,0.408]	chr7	339439	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ZC3HAV1	ENSG00000105939.14	ENST00000242351.10:ENST00000464606.5:ENST00000680309.1:ENST00000471652.1	protein_coding	protein_coding	protein_coding	protein_coding	4	53	2	2.21238	2.25518	2.29798	0.0218124	0.0147606	0.11491	0.106702
chr7	72883168	72883267	3329827	0	+	0.474747	(0.44,0.476]	chr7	309555	29	INTRON	INTRON	POM121	ENSG00000196313.13	ENST00000627934.3:ENST00000395270.5	protein_coding	protein_coding	protein_coding	protein_coding	7	64	2	1.5358	2.2551550000000002	2.97451	0.0263135	0.00853825	0.133676	0.0780043
chr3	128776222	128776322	1497711	0	+	0.41	(0.408,0.44]	chr3	156330	495	INTRON	INTRON	RAB7A	ENSG00000075785.14	ENST00000676214.1:ENST00000675864.1:ENST00000675712.1:ENST00000676425.1:ENST00000490093.6:ENST00000675342.1:ENST00000265062.8:ENST00000674748.1:ENST00000493186.6:ENST00000482525.5:ENST00000491681.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	52	2	1.81572	2.255145	2.69457	0.0626779	0.00331036	0.175915	0.0527031
chr4	88775702	88775802	2200137	0	-	0.37	(0.35,0.378]	chr4	215930	73	INTRON	INTRON	FAM13A	ENSG00000138640.15	ENST00000395002.6:ENST00000264344.10:ENST00000503556.5:ENST00000511976.5:ENST00000508369.5:ENST00000513837.5:ENST00000504836.5:ENST00000507352.1:ENST00000502459.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	11	113	2	1.33753	2.2550850000000002	3.17264	0.0317376	6.16722e-4	0.14477	0.0229036
chr1	15569461	15569559	33243	0	+	0.438776	(0.408,0.44]	chr1	4063	14	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:SS5_PROX:INTRON	DNAJC16	ENSG00000116138.13	ENST00000375849.5:ENST00000475133.5:ENST00000616884.4:ENST00000375847.8:ENST00000483270.1:ENST00000495523.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	65	2	2.21238	2.2550749999999997	2.29777	0.0193525	0.0067764	0.119831	0.0711802
chrX	138976519	138976619	7901328	0	-	0.38	(0.378,0.408]	chrX	804239	1115	INTRON	INTRON	FGF13	ENSG00000129682.16	ENST00000441825.8:ENST00000626909.2:ENST00000436198.5:ENST00000455663.5:ENST00000448673.1:ENST00000421460.1	protein_coding	protein_coding	protein_coding	protein_coding	4	47	2	1.78011	2.25502	2.72993	0.0356367	0.0188736	0.151629	0.108861
chr1	171489922	171490022	253258	0	+	0.51	(0.476,0.515]	chr1	30096	38	INTRON	INTRON	PRRC2C	ENSG00000117523.18	ENST00000647382.2:ENST00000367742.7:ENST00000476522.5:ENST00000338920.8:ENST00000467601.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	105	2	1.70347	2.25499	2.80651	0.00689763	0.00250121	0.0750922	0.0446195
chr4	70827751	70827851	2155698	0	-	0.4	(0.378,0.408]	chr4	212375	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	GRSF1	ENSG00000132463.15	ENST00000254799.11:ENST00000505068.5:ENST00000499044.6:ENST00000502323.5:ENST00000514161.5:ENST00000506453.1:ENST00000508091.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	47	2	1.72045	2.254955	2.78946	0.0424671	0.0158859	0.161763	0.101453
chr6	37946497	37946597	2858301	0	+	0.38	(0.378,0.408]	chr6	270231	161	INTRON	INTRON	ZFAND3	ENSG00000156639.12	ENST00000287218.9:ENST00000373391.6:ENST00000474522.5:ENST00000373389.5	protein_coding	protein_coding	protein_coding	protein_coding	4	47	2	1.72045	2.254955	2.78946	0.0424671	0.0158859	0.161763	0.101453
chr12	120900577	120900677	5435870	0	-	0.48	(0.476,0.515]	chr12	519663	651	INTRON	INTRON	SPPL3	ENSG00000157837.16	ENST00000353487.7:ENST00000536996.5:ENST00000543608.5:ENST00000543854.5	protein_coding	protein_coding	protein_coding	protein_coding	5	61	2	1.96833	2.25495	2.54157	0.0195007	0.00697457	0.119967	0.0718189
chr17	1358808	1358907	6699187	0	-	0.494949	(0.476,0.515]	chr17	655527	41	INTRON	INTRON	YWHAE	ENSG00000108953.17	ENST00000264335.13:ENST00000466227.6:ENST00000571732.5:ENST00000573026.1:ENST00000496706.1:ENST00000573196.5:ENST00000575977.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	61	2	1.96833	2.25495	2.54157	0.0195007	0.00697457	0.119967	0.0718189
chr2	167856016	167856116	1258360	0	-	0.27	[0,0.28]	chr2	133322	404	INTRON	INTRON	B3GALT1-AS1	ENSG00000235335.3	ENST00000430546.2:ENST00000657553.1:ENST00000670221.1:ENST00000436982.2	lncRNA	lncRNA	lncRNA	lncRNA	7	114	2	1.91265	2.254855	2.59706	0.0112687	0.00894925	0.0944526	0.0799922
chr1	31003366	31003465	412267	0	-	0.424242	(0.408,0.44]	chr1	49713	78	INTRON	INTRON	PUM1	ENSG00000134644.16	ENST00000426105.7:ENST00000373747.7:ENST00000257075.9:ENST00000424085.6:ENST00000525843.5:ENST00000440538.6:ENST00000373741.8:ENST00000373742.6:ENST00000526215.5:ENST00000525948.5:ENST00000480602.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	71	2	2.19398	2.254815	2.31565	0.0154718	0.0043348	0.100909	0.0600652
chr4	126596198	126596298	2236671	0	-	0.46	(0.44,0.476]	chr4	219023	1307	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	9	102	2	2.06139	2.254755	2.44812	0.00368597	0.00297288	0.0535094	0.0501309
chr6	47583164	47583264	2874633	0	+	0.38	(0.378,0.408]	chr6	272786	7	INTRON	INTRON	CD2AP	ENSG00000198087.7	ENST00000359314.5	protein_coding	protein_coding	protein_coding	protein_coding	5	58	2	2.12071	2.25472	2.38873	0.0458857	0.00601933	0.149888	0.0700813
chr22	20936739	20936839	7480711	0	+	0.58	(0.57,1]	chr22	763096	21	INTRON	INTRON	CRKL	ENSG00000099942.13	ENST00000354336.8:ENST00000411769.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	54	2	2.20113	2.25469	2.30825	0.00499769	0.00116436	0.0617433	0.0314528
chr22	20815298	20815397	7559243	0	-	0.464646	(0.44,0.476]	chr22	773179	14	INTRON	INTRON	PI4KA	ENSG00000241973.11	ENST00000255882.11:ENST00000485963.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	38	2	2.21079	2.2546049999999997	2.29842	0.0552483	0.0194581	0.165463	0.119831
chr4	39715159	39715259	1953162	0	+	0.47	(0.44,0.476]	chr4	195630	164	INTRON	INTRON	UBE2K	ENSG00000078140.14	ENST00000510934.5:ENST00000261427.10:ENST00000438068.6:ENST00000513231.5:ENST00000503368.5:ENST00000445950.2:ENST00000510719.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	38	2	2.21079	2.2546049999999997	2.29842	0.0552483	0.0194581	0.165463	0.119831
chr7	152285799	152285899	3679780	0	-	0.47	(0.44,0.476]	chr7	341618	1	SS5_PROX	SS5_PROX:INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000684262.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	38	2	2.21079	2.2546049999999997	2.29842	0.0552483	0.0194581	0.165463	0.119831
chrX	155908755	155908855	7741075	0	+	0.45	(0.44,0.476]	chrX	792642	78	INTRON	INTRON	VAMP7	ENSG00000124333.16	ENST00000286448.12:ENST00000479687.6:ENST00000488344.6:ENST00000463317.6:ENST00000262640.11:ENST00000460621.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	38	2	2.21079	2.2546049999999997	2.29842	0.0552483	0.0194581	0.165463	0.119831
chr11	3364081	3364180	4893696	0	-	0.353535	(0.35,0.378]	chr11	458671	16	EXON_MRNA	EXON_MRNA:INTRON	ZNF195	ENSG00000005801.18	ENST00000528796.5:ENST00000399602.9:ENST00000354599.10:ENST00000343338.11:ENST00000620374.4:ENST00000649622.1:ENST00000429541.6:ENST00000005082.13:ENST00000526601.5:ENST00000438262.6:ENST00000528410.5:ENST00000528218.5:ENST00000529789.5:ENST00000525313.6:ENST00000533036.5:ENST00000529228.5:ENST00000529678.5:ENST00000528636.1:ENST00000427810.6:ENST00000534569.5:ENST00000524857.5:ENST00000530643.5:ENST00000618467.4:ENST00000330692.11	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	77	2	1.77736	2.2545	2.73164	0.0225073	0.00387645	0.124921	0.0543578
chr1	42248337	42248437	431562	0	-	0.54	(0.515,0.57]	chr1	52311	200	INTRON	INTRON	FOXJ3	ENSG00000198815.9	ENST00000372573.5:ENST00000372572.5:ENST00000361776.5:ENST00000545068.5:ENST00000361346.6:ENST00000445886.5	protein_coding	protein_coding	protein_coding	protein_coding	3	33	2	1.9459	2.25448	2.56306	0.0429089	0.0247751	0.148082	0.131869
chr18	9710043	9710143	6871789	0	+	0.52	(0.515,0.57]	chr18	680774	12	INTRON	INTRON	RAB31	ENSG00000168461.13	ENST00000578734.5:ENST00000578921.6:ENST00000581109.1:ENST00000583137.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	33	2	1.9459	2.25448	2.56306	0.0429089	0.0247751	0.148082	0.131869
chr5	6736309	6736409	2316064	0	+	0.55	(0.515,0.57]	chr5	224267	208	INTRON	INTRON	TENT4A	ENSG00000112941.14	ENST00000230859.8:ENST00000515721.1:ENST00000631941.2	protein_coding	protein_coding	protein_coding	protein_coding	3	33	2	1.9459	2.25448	2.56306	0.0429089	0.0247751	0.148082	0.131869
chr1	65278405	65278505	135777	0	+	0.31	(0.28,0.32]	chr1	15346	131	INTRON	INTRON	DNAJC6	ENSG00000116675.16	ENST00000463018.5:ENST00000494710.6:ENST00000263441.11:ENST00000395325.7:ENST00000483402.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	120	2	2.00786	2.2542850000000003	2.50071	0.00687366	0.00418869	0.0749442	0.0572071
chr10	92691469	92691569	4491347	0	+	0.4	(0.378,0.408]	chr10	413668	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	HHEX	ENSG00000152804.11	ENST00000282728.10:ENST00000551454.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	106	2	1.94426	2.254195	2.56413	0.00520377	0.0024299	0.0655609	0.0444645
chr9	37151342	37151442	4117967	0	+	0.29	(0.28,0.32]	chr9	375382	35	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000322831.6:ENST00000461038.5:ENST00000488607.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	94	2	2.06157	2.254185	2.4468	0.0189458	0.0037095	0.108861	0.0561833
chr17	77093733	77093830	6678150	0	+	0.443299	(0.44,0.476]	chr17	652310	5	EXON_LNCRNA	EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SNHG20:SEC14L1	ENSG00000234912.12:ENSG00000129657.16	ENST00000564414.5:ENST00000568056.5:ENST00000568363.5:ENST00000647734.1:ENST00000434411.6:ENST00000649047.1:ENST00000649712.1:ENST00000650557.1:ENST00000647904.1:ENST00000648984.1:ENST00000392476.6:ENST00000589827.5:ENST00000561721.6:ENST00000561633.5:ENST00000564509.5:ENST00000565256.1:ENST00000566583.5:ENST00000648740.1:ENST00000569632.1:ENST00000430767.8	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	8	98	2	2.12136	2.2541700000000002	2.38698	0.00591413	0.00229045	0.0694038	0.0427959
chr21	9122763	9122863	7426567	0	-	0.41	(0.408,0.44]	chr21	757579	345	INTRON	INTRON	TEKT4P2	ENSG00000188681.12	ENST00000690061.1:ENST00000689141.1:ENST00000688310.1:ENST00000687537.1:ENST00000690096.1:ENST00000687888.1:ENST00000690389.1:ENST00000684989.1:ENST00000416067.6:ENST00000693307.1:ENST00000692383.1:ENST00000685666.1:ENST00000688451.1:ENST00000691190.1:ENST00000685532.1:ENST00000687488.1:ENST00000690713.1:ENST00000691834.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	6	75	2	2.17784	2.254115	2.33039	0.00916282	0.00598147	0.0855292	0.0674604
chr10	125059328	125059428	4713322	0	-	0.52	(0.515,0.57]	chr10	434897	198	INTRON	INTRON	CTBP2	ENSG00000175029.17	ENST00000337195.9:ENST00000411419.6:ENST00000494626.6:ENST00000531469.5:ENST00000460976.5:ENST00000476817.1:ENST00000530884.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	88	2	1.38719	2.25405	3.12091	0.0540435	1.0674e-4	0.181713	0.00924854
chr20	62056004	62056104	7360819	0	-	0.53	(0.515,0.57]	chr20	750714	409	INTRON	INTRON	TAF4	ENSG00000130699.20	ENST00000252996.9:ENST00000608887.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	53	2	1.63184	2.25405	2.87626	0.0545832	0.00136224	0.165292	0.0339121
chr19	47191654	47191754	7084493	0	+	0.41	(0.408,0.44]	chr19	708804	110	INTRON	INTRON	SAE1	ENSG00000142230.13	ENST00000413379.7:ENST00000270225.12:ENST00000598840.5:ENST00000414294.6:ENST00000660039.1:ENST00000664120.1:ENST00000596995.1:ENST00000392776.3:ENST00000659110.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	38	2	2.14732	2.2540250000000004	2.36073	0.0481658	0.0237354	0.153019	0.129075
chr1	28740798	28740898	58384	0	+	0.54	(0.515,0.57]	chr1	7596	4	SS5_PROX	SS5_PROX:INTRON	YTHDF2	ENSG00000198492.16	ENST00000542507.5:ENST00000474884.5:ENST00000373812.8:ENST00000541996.5:ENST00000478283.5:ENST00000496288.5:ENST00000476976.1:ENST00000475796.5:ENST00000468863.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	87	2	1.80447	2.253995	2.70352	0.00879341	9.70997e-4	0.084878	0.0283239
chr12	108534665	108534761	5405478	0	-	0.354167	(0.35,0.378]	chr12	515857	20	INTRON	INTRON	SART3	ENSG00000075856.12	ENST00000546815.6:ENST00000651280.1:ENST00000228284.8:ENST00000546728.5:ENST00000431469.6:ENST00000547528.5:ENST00000546808.5:ENST00000548077.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	41	2	2.10859	2.25399	2.39939	0.0458078	0.0272722	0.149888	0.136494
chr7	143299722	143299822	3441405	0	+	0.36	(0.35,0.378]	chr7	320930	4	SS3_PROX	SS3_PROX:INTRON	CASP2	ENSG00000106144.20	ENST00000619992.4:ENST00000310447.10:ENST00000350623.7:ENST00000493642.5:ENST00000472067.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	41	2	2.10859	2.25399	2.39939	0.0458078	0.0272722	0.149888	0.136494
chr6	35886523	35886623	3088471	0	-	0.28	[0,0.28]	chr6	288861	4	SS5_PROX	SS5_PROX:INTRON	SRPK1	ENSG00000096063.16	ENST00000373825.7:ENST00000423325.6:ENST00000346162.10:ENST00000361690.7:ENST00000510290.5:ENST00000373821.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	9	158	2	2.24991	2.2539749999999996	2.25804	0.00686976	0.0029439	0.0716675	0.0497585
chr1	151209237	151209337	224976	0	+	0.48	(0.476,0.515]	chr1	25634	97	INTRON	INTRON	PIP5K1A	ENSG00000143398.20	ENST00000447555.5:ENST00000349792.9:ENST00000368888.9:ENST00000409426.5:ENST00000368890.8:ENST00000441902.6:ENST00000424999.1:ENST00000454769.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	45	2	1.74317	2.2538850000000004	2.7646	0.0396373	0.0162075	0.161534	0.101453
chr17	29551304	29551404	6587267	0	+	0.48	(0.476,0.515]	chr17	640490	84	UTR3	UTR3:EXON_MRNA	TAOK1	ENSG00000160551.12	ENST00000261716.8	protein_coding	protein_coding	protein_coding	protein_coding	4	45	2	1.74317	2.2538850000000004	2.7646	0.0396373	0.0162075	0.161534	0.101453
chr3	37364883	37364983	1396999	0	+	0.48	(0.476,0.515]	chr3	146465	32	INTRON	INTRON	GOLGA4	ENSG00000144674.17	ENST00000444882.5:ENST00000356847.8:ENST00000361924.7:ENST00000437131.1	protein_coding	protein_coding	protein_coding	protein_coding	4	45	2	1.74317	2.2538850000000004	2.7646	0.0396373	0.0162075	0.161534	0.101453
chr5	175526301	175526383	2551014	0	+	0.5	(0.476,0.515]	chr5	243560	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SFXN1	ENSG00000164466.13	ENST00000321442.10:ENST00000421887.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	45	2	1.74317	2.2538850000000004	2.7646	0.0396373	0.0162075	0.161534	0.101453
chr1	112670329	112670428	186845	0	+	0.272727	[0,0.28]	chr1	20688	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	CAPZA1	ENSG00000116489.13	ENST00000476936.5:ENST00000263168.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	79	1317	2	2.15877	2.2538650000000002	2.34896	2.53379e-4	1.41273e-4	0.0147559	0.0102551
chr8	37896474	37896574	3935915	0	-	0.35	(0.32,0.35]	chr8	360576	185	INTRON	INTRON	RAB11FIP1	ENSG00000156675.16	ENST00000330843.9:ENST00000287263.8:ENST00000522727.5	protein_coding	protein_coding	protein_coding	protein_coding	8	110	2	2.22834	2.2538650000000002	2.27939	0.00844518	0.00242823	0.0776969	0.0455188
chr16	75049284	75049384	6389922	0	+	0.45	(0.44,0.476]	chr16	614488	20	INTRON	INTRON	ZNRF1	ENSG00000186187.12	ENST00000335325.9:ENST00000320619.10:ENST00000567962.5:ENST00000566250.5:ENST00000564320.1:ENST00000568511.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	52	2	2.0776	2.25378	2.42996	0.0292951	0.0104804	0.141862	0.0855777
chr20	4001262	4001362	7309265	0	-	0.29	(0.28,0.32]	chr20	744300	265	INTRON	INTRON	RNF24	ENSG00000101236.17	ENST00000336095.10:ENST00000358395.11:ENST00000545616.2	protein_coding	protein_coding	protein_coding	protein_coding	5	78	2	2.06884	2.25377	2.4387	0.0152581	0.0126802	0.108569	0.0926667
chr7	27633641	27633740	3510649	0	-	0.373737	(0.35,0.378]	chr7	327343	8	INTRON	INTRON	HIBADH	ENSG00000106049.9	ENST00000265395.7:ENST00000428288.2:ENST00000425715.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	67	2	1.91706	2.25376	2.59046	0.026412	0.00528327	0.122506	0.0656295
chr12	14389584	14389683	5082959	0	+	0.373737	(0.35,0.378]	chr12	480401	38	INTRON	INTRON	ATF7IP	ENSG00000171681.13	ENST00000539659.5:ENST00000537653.5:ENST00000261168.9:ENST00000538511.5:ENST00000545723.1:ENST00000543189.5:ENST00000536444.5:ENST00000542967.1:ENST00000534828.1:ENST00000535132.1:ENST00000544627.5:ENST00000541654.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	41	2	1.90405	2.25373	2.60341	0.0482651	0.0275785	0.171852	0.123904
chr8	93732215	93732314	3992305	0	-	0.373737	(0.35,0.378]	chr8	365419	42	UTR3	UTR3:EXON_MRNA:INTRON	RBM12B	ENSG00000183808.12	ENST00000399300.7:ENST00000520560.6:ENST00000518597.2:ENST00000517700.6:ENST00000519109.6:ENST00000520961.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	41	2	1.90405	2.25373	2.60341	0.0482651	0.0275785	0.171852	0.123904
chr6	35834328	35834426	3087933	0	-	0.387755	(0.378,0.408]	chr6	288803	15	UTR3	UTR3:EXON_MRNA	SRPK1	ENSG00000096063.16	ENST00000373825.7:ENST00000423325.6:ENST00000346162.10:ENST00000361690.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	88	2	1.674	2.25372	2.83344	0.0159536	0.00244811	0.109464	0.0445777
chr4	16188855	16188953	2115432	0	-	0.530612	(0.515,0.57]	chr4	208961	1	INTRON	INTRON	TAPT1	ENSG00000169762.17	ENST00000405303.7:ENST00000505603.5:ENST00000513782.1:ENST00000507425.5:ENST00000513359.5:ENST00000508888.5:ENST00000510868.5:ENST00000505152.5:ENST00000511866.6:ENST00000513833.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	63	2	1.97035	2.2537	2.53705	0.0195832	0.00186194	0.109483	0.039946
chr6	14777330	14777430	3060699	0	-	0.43	(0.408,0.44]	chr6	284627	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ENSG00000234261	ENSG00000234261.5	ENST00000689305.1:ENST00000629853.2	lncRNA	lncRNA	lncRNA	lncRNA	3	38	2	1.85305	2.253625	2.6542	0.0543543	0.0227514	0.182243	0.117618
chr6	157871707	157871806	3016249	0	+	0.272727	[0,0.28]	chr6	281360	37	INTRON	INTRON	SNX9	ENSG00000130340.17	ENST00000614703.4:ENST00000614800.4:ENST00000680863.1:ENST00000679814.1:ENST00000680464.1:ENST00000681186.1:ENST00000679732.1:ENST00000681183.1:ENST00000681534.1:ENST00000681651.1:ENST00000680089.1:ENST00000680078.1:ENST00000680974.1:ENST00000680095.1:ENST00000680015.1:ENST00000681138.1:ENST00000392185.8:ENST00000679790.1:ENST00000680495.1:ENST00000679691.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	90	2	1.62991	2.253605	2.8773	0.0671202	0.00226728	0.183051	0.0437013
chr1	21689280	21689376	395893	0	-	0.479167	(0.476,0.515]	chr1	47205	17	INTRON	INTRON	USP48	ENSG00000090686.16	ENST00000400301.5:ENST00000308271.14:ENST00000374732.7:ENST00000529637.5:ENST00000464577.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	110	2	1.69492	2.25353	2.81214	0.0127656	5.41922e-4	0.0926667	0.0211086
chr10	5899647	5899746	4385275	0	+	0.545455	(0.515,0.57]	chr10	404631	41	INTRON	INTRON	FBH1	ENSG00000134452.20	ENST00000397269.7:ENST00000362091.9:ENST00000470089.5:ENST00000462507.1:ENST00000379999.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	63	2	2.22166	2.2535	2.28534	0.00735516	0.0061678	0.0765982	0.067653
chr1	243071102	243071201	667065	0	-	0.373737	(0.35,0.378]	chr1	79146	10	INTRON	INTRON	LINC01347	ENSG00000214837.8	ENST00000627498.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	7	88	2	1.43253	2.253455	3.07438	0.0486238	9.54868e-4	0.173047	0.0282401
chr3	15844386	15844486	1624291	0	-	0.35	(0.32,0.35]	chr3	168034	297	INTRON	INTRON	ANKRD28	ENSG00000206560.12	ENST00000399451.6:ENST00000412318.5:ENST00000439830.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	122	2	1.33306	2.253405	3.17375	0.0593533	9.64618e-5	0.168806	0.00826486
chr1	174435382	174435482	259884	0	+	0.26	[0,0.28]	chr1	30818	409	INTRON	INTRON	RABGAP1L	ENSG00000152061.24	ENST00000357444.10:ENST00000251507.8:ENST00000681986.1:ENST00000367690.5:ENST00000526253.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	76	2	2.10688	2.2533950000000003	2.39991	0.0307985	0.0163416	0.143385	0.101571
chr15	66611417	66611517	6051075	0	+	0.6	(0.57,1]	chr15	576221	288	INTRON	INTRON	LINC01169	ENSG00000259471.1	ENST00000558797.1	lncRNA	lncRNA	lncRNA	lncRNA	4	28	2	1.91937	2.25335	2.58733	0.0468438	0.00454222	0.167716	0.0595107
chr2	177259310	177259410	1275793	0	-	0.4	(0.378,0.408]	chr2	134708	247	INTRON	INTRON	NFE2L2	ENSG00000116044.16	ENST00000397063.8:ENST00000464747.5:ENST00000397062.8:ENST00000446151.6:ENST00000449627.1:ENST00000448782.5:ENST00000430047.1:ENST00000586532.5:ENST00000421929.5:ENST00000423513.5:ENST00000588123.1:ENST00000477534.1:ENST00000462023.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	39	2	2.04292	2.2533250000000002	2.46373	0.0382831	0.0326035	0.145164	0.141795
chr5	62423961	62424061	2363114	0	+	0.4	(0.378,0.408]	chr5	227852	10	INTRON	INTRON	IPO11	ENSG00000086200.17	ENST00000514647.5:ENST00000424533.5:ENST00000505902.5:ENST00000325324.11:ENST00000506200.5:ENST00000409296.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	39	2	2.04292	2.2533250000000002	2.46373	0.0382831	0.0326035	0.145164	0.141795
chr7	131096472	131096572	3642564	0	-	0.38	(0.378,0.408]	chr7	338763	81	INTRON	INTRON	LINC-PINT	ENSG00000231721.7	ENST00000647388.1:ENST00000423414.5:ENST00000433079.5:ENST00000642156.1:ENST00000646429.1:ENST00000451786.5:ENST00000645248.1:ENST00000642602.1:ENST00000644804.1:ENST00000647288.1:ENST00000643135.1:ENST00000643855.1:ENST00000643874.1:ENST00000644188.1:ENST00000431189.1:ENST00000642483.1:ENST00000429901.2	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	3	39	2	2.04292	2.2533250000000002	2.46373	0.0382831	0.0326035	0.145164	0.141795
chr9	135881132	135881232	4372003	0	-	0.4	(0.378,0.408]	chr9	402480	1	SS5_PROX	SS5_PROX:INTRON	CAMSAP1	ENSG00000130559.19	ENST00000389532.9:ENST00000312405.10:ENST00000409386.3:ENST00000468150.1:ENST00000460094.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	39	2	2.04292	2.2533250000000002	2.46373	0.0382831	0.0326035	0.145164	0.141795
chr1	6523109	6523207	367797	0	-	0.459184	(0.44,0.476]	chr1	43178	19	UTR3	UTR3:EXON_MRNA	NOL9	ENSG00000162408.11	ENST00000377705.6	protein_coding	protein_coding	protein_coding	protein_coding	7	92	2	1.98146	2.25327	2.52508	0.0186013	0.00121905	0.117264	0.0319984
chr1	226147713	226147811	646661	0	-	0.387755	(0.378,0.408]	chr1	76630	5	INTRON	INTRON	ACBD3	ENSG00000182827.9	ENST00000366812.6	protein_coding	protein_coding	protein_coding	protein_coding	3	39	2	1.97143	2.25323	2.53503	0.0398704	0.0319942	0.161534	0.13174
chr10	74320944	74321044	4457469	0	+	0.39	(0.378,0.408]	chr10	411559	58	INTRON	INTRON	ADK	ENSG00000156110.15	ENST00000672429.1:ENST00000539909.6:ENST00000286621.7:ENST00000673352.1:ENST00000673310.1:ENST00000672920.1:ENST00000672394.1:ENST00000372734.5:ENST00000673027.1:ENST00000541550.6:ENST00000672604.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	39	2	1.97143	2.25323	2.53503	0.0398704	0.0319942	0.161534	0.13174
chr18	2977585	2977685	6944742	0	-	0.4	(0.378,0.408]	chr18	686833	4	SS3_PROX	SS3_PROX:INTRON	LPIN2	ENSG00000101577.10	ENST00000261596.8:ENST00000677752.1:ENST00000584915.1:ENST00000581568.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	39	2	1.97143	2.25323	2.53503	0.0398704	0.0319942	0.161534	0.13174
chr2	210018621	210018721	1000492	0	+	0.4	(0.378,0.408]	chr2	107412	4	SS5_PROX	SS5_PROX:INTRON	RPE	ENSG00000197713.15	ENST00000354506.10:ENST00000436630.6:ENST00000408981.6:ENST00000429921.5:ENST00000454822.5:ENST00000359429.11:ENST00000429907.5:ENST00000438204.6:ENST00000452025.5:ENST00000445268.5:ENST00000411934.6:ENST00000435437.2	protein_coding	protein_coding	protein_coding	protein_coding	3	39	2	1.97143	2.25323	2.53503	0.0398704	0.0319942	0.161534	0.13174
chr18	206087	206186	6855315	0	+	0.40404	(0.378,0.408]	chr18	679566	10	INTRON	INTRON	USP14	ENSG00000101557.15	ENST00000582707.5:ENST00000400266.7:ENST00000261601.8:ENST00000578942.5:ENST00000383589.6:ENST00000578786.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	56	2	1.9714	2.253215	2.53503	0.0319942	0.0109363	0.13174	0.0924799
chr11	65423272	65423372	4805775	0	+	0.6	(0.57,1]	chr11	446554	6	EXON_LNCRNA	EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NEAT1	ENSG00000245532.10	ENST00000499732.3:ENST00000687132.1:ENST00000501122.2:ENST00000685861.1:ENST00000601801.3:ENST00000612303.2:ENST00000670617.1:ENST00000646243.1:ENST00000645023.1	lncRNA	lncRNA	lncRNA	lncRNA	86	484	2	1.93131	2.253135	2.57496	3.03773e-5	2.1956e-7	0.00440292	2.40424e-4
chr20	56377045	56377145	7358728	0	-	0.43	(0.408,0.44]	chr20	750346	31	INTRON	INTRON	AURKA	ENSG00000087586.18	ENST00000395914.5:ENST00000395913.7:ENST00000312783.10:ENST00000395911.5:ENST00000395915.8:ENST00000347343.6:ENST00000371356.6:ENST00000395907.5:ENST00000441357.5	protein_coding	protein_coding	protein_coding	protein_coding	4	51	2	2.05947	2.253105	2.44674	0.0333232	0.00868283	0.134145	0.0842798
chr21	36353555	36353654	7404035	0	+	0.424242	(0.408,0.44]	chr21	754328	38	INTRON	INTRON	MORC3	ENSG00000159256.13	ENST00000400485.6:ENST00000487909.5:ENST00000485299.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	51	2	2.05947	2.253105	2.44674	0.0333232	0.00868283	0.134145	0.0842798
chr5	36896584	36896684	2338628	0	+	0.43	(0.408,0.44]	chr5	225949	102	INTRON	INTRON	NIPBL	ENSG00000164190.19	ENST00000282516.13:ENST00000448238.2:ENST00000652901.1	protein_coding	protein_coding	protein_coding	protein_coding	4	51	2	2.05947	2.253105	2.44674	0.0333232	0.00868283	0.134145	0.0842798
chr7	105113630	105113729	3375666	0	+	0.323232	(0.32,0.35]	chr7	316031	4	UTR3	UTR3:EXON_MRNA	KMT2E	ENSG00000005483.22	ENST00000334884.9:ENST00000311117.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	17	235	2	2.15343	2.253105	2.35278	0.00149756	3.9145e-4	0.0351496	0.0178135
chr7	12398069	12398169	3485383	0	-	0.43	(0.408,0.44]	chr7	325970	39	INTRON	INTRON	VWDE	ENSG00000146530.15	ENST00000275358.8:ENST00000452576.6:ENST00000521169.5:ENST00000326715.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	62	2	2.00629	2.25306	2.49983	0.0189661	0.00713527	0.108861	0.0756118
chr5	6628132	6628230	2566729	0	-	0.438776	(0.408,0.44]	chr5	245964	21	INTRON	INTRON	NSUN2	ENSG00000037474.15	ENST00000264670.11:ENST00000504374.5:ENST00000506139.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	51	2	2.11447	2.253045	2.39162	0.0285207	0.0105837	0.12666	0.0911864
chr11	65438649	65438749	4805929	0	+	0.4	(0.378,0.408]	chr11	446554	160	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	71	819	2	2.25265	2.253025	2.2534	1.13603e-4	1.73297e-5	0.00958316	0.00316238
chr2	169944607	169944706	909333	0	+	0.252525	[0,0.28]	chr2	100326	16	INTRON	INTRON	UBR3	ENSG00000144357.18	ENST00000272793.11:ENST00000430321.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	142	2	1.96971	2.2529250000000003	2.53614	0.0179051	0.00143852	0.106396	0.034757
chr1	31304274	31304373	61232	0	+	0.535354	(0.515,0.57]	chr1	7820	67	INTRON	INTRON	ZCCHC17	ENSG00000121766.16	ENST00000618216.4:ENST00000546109.5:ENST00000616393.4:ENST00000616859.4:ENST00000615916.4:ENST00000479629.5:ENST00000373714.5:ENST00000344147.10:ENST00000627541.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	39	2	1.81744	2.252885	2.68833	0.031028	0.0184931	0.143457	0.108861
chr8	67207888	67207988	3962425	0	-	0.53	(0.515,0.57]	chr8	363563	8	INTRON	INTRON	ARFGEF1	ENSG00000066777.9	ENST00000520381.5:ENST00000518789.5:ENST00000262215.8:ENST00000518230.5	protein_coding	protein_coding	protein_coding	protein_coding	4	39	2	1.81744	2.252885	2.68833	0.031028	0.0184931	0.143457	0.108861
chr6	20466056	20466156	2828091	0	+	0.61	(0.57,1]	chr6	265583	260	INTRON	INTRON	E2F3	ENSG00000112242.16	ENST00000346618.8:ENST00000535432.2	protein_coding	protein_coding	protein_coding	protein_coding	4	25	2	1.83769	2.25285	2.66801	0.0297587	0.0169968	0.12908	0.110899
chr16	46620639	46620726	6478113	0	-	0.287356	(0.28,0.32]	chr16	626612	3	EXON_LNCRNA	EXON_LNCRNA:INTRON	SHCBP1	ENSG00000171241.9	ENST00000303383.8:ENST00000566016.5:ENST00000564272.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	78	2	1.79721	2.25276	2.70831	0.0408024	0.00378444	0.1451	0.0562562
chr17	43238967	43239066	6776577	0	-	0.414141	(0.408,0.44]	chr17	667944	51	INTRON	INTRON	CCDC200	ENSG00000236383.9	ENST00000594691.6:ENST00000615433.2	protein_coding	protein_coding	protein_coding	protein_coding	4	54	2	1.93243	2.2526900000000003	2.57295	0.0441194	0.00640423	0.162255	0.0694534
chr7	73474771	73474871	3554618	0	-	0.34	(0.32,0.35]	chr7	330777	39	INTRON	INTRON	BAZ1B	ENSG00000009954.11	ENST00000339594.9:ENST00000404251.1	protein_coding	protein_coding	protein_coding	protein_coding	9	126	2	2.02305	2.25268	2.48231	0.00783414	0.00132969	0.076075	0.0335108
chr1	47306988	47307088	446040	0	-	0.54	(0.515,0.57]	chr1	54067	16	INTRON	INTRON	STIL	ENSG00000123473.17	ENST00000360380.7:ENST00000371877.8:ENST00000337817.10:ENST00000682977.1:ENST00000396221.6:ENST00000447475.7:ENST00000436811.2	protein_coding	protein_coding	protein_coding	protein_coding	4	39	2	1.60221	2.2526599999999997	2.90311	0.0581855	0.0094233	0.188704	0.0817766
chr7	121375026	121375126	3630687	0	-	0.39	(0.378,0.408]	chr7	337377	25	INTRON	INTRON	FAM3C	ENSG00000196937.11	ENST00000359943.8:ENST00000412653.5:ENST00000426156.1	protein_coding	protein_coding	protein_coding	protein_coding	4	47	2	1.8374	2.252625	2.66785	0.0299228	0.0224639	0.142135	0.11692
chr17	30145707	30145807	6587679	0	+	0.35	(0.32,0.35]	chr17	640563	176	INTRON	INTRON	NSRP1	ENSG00000126653.18	ENST00000540900.7:ENST00000612959.4:ENST00000247026.10:ENST00000577289.6:ENST00000584154.5:ENST00000394826.8:ENST00000475652.5:ENST00000584317.5:ENST00000583301.5:ENST00000585881.5:ENST00000467446.6:ENST00000580103.6:ENST00000581048.5:ENST00000588614.1:ENST00000589608.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	60	2	1.83416	2.25242	2.67068	0.0631198	0.00406276	0.176946	0.0578984
chr15	89092738	89092836	6094608	0	+	0.367347	(0.35,0.378]	chr15	579963	20	INTRON	INTRON	ABHD2	ENSG00000140526.18	ENST00000569411.5:ENST00000569550.5:ENST00000564876.5:ENST00000565066.5:ENST00000565973.5:ENST00000352732.10:ENST00000565825.5:ENST00000562254.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	42	2	1.93432	2.252405	2.57049	0.0481438	0.0262669	0.153019	0.133676
chr22	19111946	19112046	7551910	0	-	0.37	(0.35,0.378]	chr22	771903	221	INTRON	INTRON	DGCR2	ENSG00000070413.20	ENST00000537045.5:ENST00000545799.5:ENST00000263196.12:ENST00000389262.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	42	2	1.93432	2.252405	2.57049	0.0481438	0.0262669	0.153019	0.133676
chr1	28506184	28506267	57168	0	+	0.385542	(0.378,0.408]	chr1	7377	1	SS5_PROX	SS5_PROX:INTRON	RCC1:SNHG3	ENSG00000180198.17:ENSG00000242125.3	ENST00000398958.6:ENST00000649185.1:ENST00000413987.1:ENST00000427469.5:ENST00000683442.1:ENST00000447507.1:ENST00000434290.6:ENST00000373833.10	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	135	1675	2	2.16703	2.25239	2.33775	2.56038e-5	2.26673e-5	0.0039788	0.00388798
chr17	75227462	75227559	6674494	0	+	0.494845	(0.476,0.515]	chr17	651401	6	INTRON	INTRON	NUP85	ENSG00000125450.11	ENST00000245544.9:ENST00000579324.5:ENST00000581104.5:ENST00000579298.5:ENST00000578830.5:ENST00000579557.5:ENST00000577645.5:ENST00000583070.5:ENST00000580879.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	78	2	1.69382	2.2522900000000003	2.81076	0.0219532	0.00203568	0.115201	0.0417667
chr1	39567941	39568037	427699	0	-	0.572917	(0.57,1]	chr1	51919	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	PABPC4	ENSG00000090621.15	ENST00000677006.1:ENST00000527718.2:ENST00000372858.8:ENST00000372856.7:ENST00000372857.7:ENST00000372862.7:ENST00000676523.1:ENST00000677548.1:ENST00000678980.1:ENST00000677244.1:ENST00000677609.1:ENST00000679246.1:ENST00000678287.1:ENST00000678625.1:ENST00000470443.6:ENST00000676863.1:ENST00000678894.1:ENST00000421687.6:ENST00000525669.5:ENST00000513632.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	41	2	1.79063	2.2522699999999998	2.71391	0.0356001	6.82348e-4	0.15159	0.0239168
chr1	213193262	213193362	312130	0	+	0.5	(0.476,0.515]	chr1	35957	164	INTRON	INTRON	RPS6KC1	ENSG00000136643.12	ENST00000615329.4:ENST00000543354.5:ENST00000614059.4:ENST00000543470.5:ENST00000366960.8:ENST00000366959.4:ENST00000490299.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	106	2	2.21639	2.252255	2.28812	0.00344676	0.00224357	0.0517761	0.0435144
chr20	35737667	35737767	7336511	0	-	0.5	(0.476,0.515]	chr20	747495	7	INTRON	INTRON	RBM39	ENSG00000131051.24	ENST00000253363.11:ENST00000639702.1:ENST00000656873.1:ENST00000463004.5:ENST00000361162.10:ENST00000461283.5:ENST00000403542.6:ENST00000338163.10:ENST00000528062.7:ENST00000429968.5:ENST00000444878.5:ENST00000665058.1:ENST00000374038.7:ENST00000412738.5:ENST00000434927.5:ENST00000425184.5:ENST00000481037.5:ENST00000455343.5:ENST00000416108.5:ENST00000426951.5:ENST00000477334.1:ENST00000442447.5:ENST00000449489.5:ENST00000433027.5:ENST00000487604.1:ENST00000453310.5:ENST00000416529.5:ENST00000397370.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	110	2	2.02951	2.2522349999999998	2.47496	0.00323541	0.00244513	0.0507251	0.0457273
chr6	99404242	99404332	3165923	0	-	0.277778	[0,0.28]	chr6	295288	5	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PNISR	ENSG00000132424.17	ENST00000681615.1:ENST00000369239.10:ENST00000647811.1:ENST00000481229.2:ENST00000679525.1:ENST00000681611.1:ENST00000438806.5:ENST00000460600.1:ENST00000478777.5:ENST00000476159.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	19	273	2	1.75	2.2521750000000003	2.75435	0.00407095	0.00101683	0.05801	0.029231300000000002
chr9	123241461	123241561	4340210	0	-	0.42	(0.408,0.44]	chr9	398963	41	INTRON	INTRON	STRBP	ENSG00000165209.19	ENST00000348403.10:ENST00000360998.3:ENST00000407982.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	104	2	1.27904	2.25217	3.2253	0.0379268	4.07735e-4	0.157212	0.0185763
chr3	37043517	37043615	1395667	0	+	0.459184	(0.44,0.476]	chr3	146271	8	INTRON	INTRON	MLH1	ENSG00000076242.16	ENST00000536378.5:ENST00000673899.1:ENST00000674111.1:ENST00000673972.1:ENST00000231790.8:ENST00000673715.1:ENST00000432299.6:ENST00000673897.1:ENST00000673947.1:ENST00000456676.6:ENST00000673673.1:ENST00000674019.1:ENST00000458205.6:ENST00000413212.2:ENST00000447829.6:ENST00000673990.1:ENST00000455445.6:ENST00000435176.5:ENST00000539477.6:ENST00000441265.6:ENST00000673889.1:ENST00000616768.5:ENST00000450420.5:ENST00000413740.1:ENST00000674125.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	131	2	2.19435	2.252085	2.30982	0.00205478	0.00140739	0.0409714	0.0344267
chr5	10391931	10392031	2318036	0	+	0.47	(0.44,0.476]	chr5	224649	2	SS5_PROX	SS5_PROX:INTRON	MARCHF6	ENSG00000145495.16	ENST00000274140.10:ENST00000449913.6:ENST00000511802.5:ENST00000503788.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	58	2	1.58453	2.252015	2.9195	0.0293513	0.0102021	0.142102	0.0850389
chr1	35918554	35918646	71014	0	+	0.521739	(0.515,0.57]	chr1	9113	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	AGO1	ENSG00000092847.13	ENST00000373206.5:ENST00000373204.6:ENST00000674426.1:ENST00000674304.1:ENST00000635259.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	72	2	2.09379	2.2520049999999996	2.41022	0.00680216	0.00332441	0.071184	0.0528673
chr7	111296190	111296290	3621444	0	-	0.33	(0.32,0.35]	chr7	337093	3323	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	60	2	2.19668	2.251995	2.30731	0.021398	0.0176772	0.123719	0.10525
chr4	78804876	78804975	1981670	0	+	0.212121	[0,0.28]	chr4	198463	278	INTRON	INTRON	BMP2K	ENSG00000138756.19	ENST00000389010.7:ENST00000502613.3:ENST00000502871.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	103	2	1.46548	2.25199	3.0385	0.0721311	0.00116412	0.187433	0.0314524
chr4	55400647	55400747	1960636	0	+	0.56	(0.515,0.57]	chr4	196546	10	INTRON	INTRON	TMEM165	ENSG00000134851.13	ENST00000381334.10:ENST00000506198.5:ENST00000508404.5:ENST00000511710.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	77	2	1.75372	2.251975	2.75023	0.0386904	2.30309e-4	0.14279	0.0133889
chrX	103675685	103675780	7856467	0	-	0.389474	(0.378,0.408]	chrX	801073	3	UTR3	UTR3:EXON_MRNA	MORF4L2	ENSG00000123562.18	ENST00000360458.5:ENST00000441076.7:ENST00000433176.6:ENST00000451301.5	protein_coding	protein_coding	protein_coding	protein_coding	33	342	2	1.78177	2.251975	2.72218	9.08062e-4	6.90837e-5	0.0277043	0.00739122
chr19	34450764	34450864	7053351	0	+	0.62	(0.57,1]	chr19	703536	4	SS5_PROX	SS5_PROX:INTRON	UBA2	ENSG00000126261.13	ENST00000586313.1:ENST00000246548.9:ENST00000439527.6:ENST00000591016.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	57	2	1.95011	2.25195	2.55379	0.00297177	0.0015786	0.0501309	0.0362091
chr4	110188853	110188953	2227637	0	-	0.36	(0.35,0.378]	chr4	218024	829	INTRON	INTRON	ELOVL6	ENSG00000170522.10	ENST00000394607.7:ENST00000302274.8:ENST00000514184.5:ENST00000506625.5:ENST00000506461.1:ENST00000503885.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	102	2	2.12112	2.251925	2.38273	0.00534773	0.00369765	0.0642565	0.0561162
chr7	158765753	158765853	3689168	0	-	0.25	[0,0.28]	chr7	342381	5	INTRON	INTRON	ESYT2	ENSG00000117868.18	ENST00000251527.10:ENST00000275418.13:ENST00000652148.1	protein_coding	protein_coding	protein_coding	protein_coding	6	84	2	1.56529	2.251895	2.9385	0.0363075	0.0142776	0.153238	0.0963703
chr10	14923588	14923675	4561582	0	-	0.45977	(0.44,0.476]	chr10	420961	7	UTR5	UTR5:EXON_MRNA:INTRON	DCLRE1C	ENSG00000152457.18	ENST00000378289.8:ENST00000378278.7:ENST00000378246.6:ENST00000357717.6:ENST00000378258.5:ENST00000378249.5:ENST00000396817.6:ENST00000378255.5:ENST00000378254.5:ENST00000378242.1:ENST00000492201.5:ENST00000489161.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	28	2	2.20949	2.2518700000000003	2.29425	0.0672585	0.0518406	0.183051	0.176696
chr10	34791783	34791883	4600060	0	-	0.46	(0.44,0.476]	chr10	423730	950	INTRON	INTRON	PARD3	ENSG00000148498.17	ENST00000545260.5:ENST00000545693.5:ENST00000346874.9:ENST00000350537.9:ENST00000374788.8:ENST00000374789.8:ENST00000374790.8:ENST00000374794.8:ENST00000374776.6:ENST00000340077.9:ENST00000374773.6	protein_coding	protein_coding	protein_coding	protein_coding	2	28	2	2.20949	2.2518700000000003	2.29425	0.0672585	0.0518406	0.183051	0.176696
chr11	9224790	9224890	4908666	0	-	0.47	(0.44,0.476]	chr11	460107	168	INTRON	INTRON	DENND5A	ENSG00000184014.9	ENST00000328194.8:ENST00000681203.1:ENST00000530780.2:ENST00000679999.1:ENST00000680470.1:ENST00000680554.1:ENST00000681425.1:ENST00000679568.1:ENST00000679446.1:ENST00000680294.1:ENST00000680742.1:ENST00000680885.1:ENST00000530044.5:ENST00000526707.5:ENST00000532696.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	28	2	2.20949	2.2518700000000003	2.29425	0.0672585	0.0518406	0.183051	0.176696
chr11	67164492	67164592	4812900	0	+	0.45	(0.44,0.476]	chr11	448116	154	INTRON	INTRON	KDM2A	ENSG00000173120.15	ENST00000529006.7:ENST00000398645.6:ENST00000527157.1:ENST00000308783.9	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	28	2	2.20949	2.2518700000000003	2.29425	0.0672585	0.0518406	0.183051	0.176696
chr12	48677439	48677539	5319222	0	-	0.45	(0.44,0.476]	chr12	506362	51	INTRON	INTRON	KANSL2	ENSG00000139620.13	ENST00000420613.7:ENST00000548147.5:ENST00000550347.5:ENST00000546701.5:ENST00000549574.5:ENST00000553086.5:ENST00000547582.5:ENST00000547536.1:ENST00000550931.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	28	2	2.20949	2.2518700000000003	2.29425	0.0672585	0.0518406	0.183051	0.176696
chr12	53035818	53035917	5141725	0	+	0.464646	(0.44,0.476]	chr12	485039	7	INTRON	INTRON	EIF4B	ENSG00000063046.18	ENST00000262056.14:ENST00000420463.7:ENST00000416762.7:ENST00000550704.5:ENST00000553209.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	28	2	2.20949	2.2518700000000003	2.29425	0.0672585	0.0518406	0.183051	0.176696
chr12	112018306	112018405	5229403	0	+	0.474747	(0.44,0.476]	chr12	495722	31	INTRON	INTRON	ERP29	ENSG00000089248.7	ENST00000455836.1:ENST00000261735.4:ENST00000552052.1	protein_coding	protein_coding	protein_coding	protein_coding	2	28	2	2.20949	2.2518700000000003	2.29425	0.0672585	0.0518406	0.183051	0.176696
chr2	201055448	201055547	1311735	0	-	0.474747	(0.44,0.476]	chr2	137309	28	INTRON	INTRON	FAM126B	ENSG00000155744.10	ENST00000681958.1:ENST00000418596.7:ENST00000286181.7:ENST00000498780.5:ENST00000452799.5:ENST00000453765.5:ENST00000446678.5:ENST00000474118.5:ENST00000485636.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	28	2	2.20949	2.2518700000000003	2.29425	0.0672585	0.0518406	0.183051	0.176696
chr20	32125420	32125520	7254465	0	+	0.46	(0.44,0.476]	chr20	736838	150	INTRON	INTRON	TM9SF4	ENSG00000101337.16	ENST00000398022.7:ENST00000442842.5:ENST00000450829.5:ENST00000217315.9:ENST00000417389.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	28	2	2.20949	2.2518700000000003	2.29425	0.0672585	0.0518406	0.183051	0.176696
chr20	41423491	41423560	7342553	0	-	0.449275	(0.44,0.476]	chr20	748382	1	CDS	CDS:EXON_MRNA	CHD6	ENSG00000124177.16	ENST00000373233.8	protein_coding	protein_coding	protein_coding	protein_coding	2	28	2	2.20949	2.2518700000000003	2.29425	0.0672585	0.0518406	0.183051	0.176696
chr16	47623719	47623819	6344944	0	+	0.44	(0.408,0.44]	chr16	608950	44	INTRON	INTRON	PHKB	ENSG00000102893.17	ENST00000566044.5:ENST00000299167.12:ENST00000696809.1:ENST00000323584.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	74	2	2.19524	2.25181	2.30838	0.00990486	0.00547703	0.0838372	0.0671198
chr13	52427519	52427619	5599098	0	-	0.55	(0.515,0.57]	chr13	535328	3	SS3_PROX	SS3_PROX:INTRON	VPS36	ENSG00000136100.14	ENST00000650274.1:ENST00000611132.4:ENST00000378060.9:ENST00000492650.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	46	2	1.89462	2.251805	2.60899	0.0232669	0.0139002	0.118148	0.10247
chr4	32017809	32017909	1941626	0	+	0.38	(0.378,0.408]	chr4	194727	196	INTRON	INTRON	LINC02506	ENSG00000251129.3	ENST00000662669.1:ENST00000665582.2:ENST00000667252.2:ENST00000660373.2:ENST00000684849.1:ENST00000513211.2:ENST00000659613.1:ENST00000657576.1:ENST00000686730.1:ENST00000685407.1:ENST00000685455.1:ENST00000655951.1	lncRNA	lncRNA	lncRNA	lncRNA	6	76	2	2.04001	2.2517300000000002	2.46345	0.00996995	0.00827342	0.08427	0.0813266
chr1	19136217	19136316	386012	0	-	0.343434	(0.32,0.35]	chr1	45834	68	INTRON	INTRON	UBR4	ENSG00000127481.15	ENST00000375254.8:ENST00000425413.5:ENST00000417040.1	protein_coding	protein_coding	protein_coding	protein_coding	3	44	2	2.19668	2.2517050000000003	2.30673	0.0584434	0.021398	0.167723	0.123719
chr17	31999972	32000068	6596322	0	+	0.34375	(0.32,0.35]	chr17	641620	11	UTR3	UTR3:EXON_MRNA	SUZ12	ENSG00000178691.11	ENST00000322652.10:ENST00000580398.1	protein_coding	protein_coding	protein_coding	protein_coding	3	44	2	2.19668	2.2517050000000003	2.30673	0.0584434	0.021398	0.167723	0.123719
chr17	30754791	30754890	6590036	0	+	0.323232	(0.32,0.35]	chr17	640860	111	INTRON	INTRON	SUZ12P1	ENSG00000264538.7	ENST00000578070.5:ENST00000579526.5:ENST00000690405.1:ENST00000497969.6:ENST00000578195.6:ENST00000582557.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	9	85	2	1.26251	2.25169	3.24087	0.0481909	0.00420518	0.171808	0.0572185
chr4	55404336	55404435	1960674	0	+	0.343434	(0.32,0.35]	chr4	196553	6	INTRON	INTRON	TMEM165	ENSG00000134851.13	ENST00000381334.10:ENST00000506198.5:ENST00000508404.5:ENST00000511710.1:ENST00000502797.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	15	210	2	1.94836	2.25169	2.55502	0.00752786	8.73507e-5	0.074841	0.00785039
chr2	32368133	32368232	730889	0	+	0.464646	(0.44,0.476]	chr2	84274	103	INTRON	INTRON	BIRC6	ENSG00000115760.15	ENST00000421745.7:ENST00000648282.1	protein_coding	protein_coding	protein_coding	protein_coding	3	38	2	1.83899	2.25166	2.66433	0.0589734	0.0194358	0.167915	0.119831
chr5	139595366	139595466	2500844	0	+	0.47	(0.44,0.476]	chr5	239026	326	INTRON	INTRON	UBE2D2	ENSG00000131508.16	ENST00000511725.5:ENST00000505007.5:ENST00000398733.8:ENST00000510470.1:ENST00000398734.8:ENST00000505548.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	107	2	2.09333	2.25162	2.40991	0.00776307	8.42944e-4	0.0757646	0.0263813
chr7	123747917	123748017	3632650	0	-	0.55	(0.515,0.57]	chr7	337581	383	INTRON	INTRON	WASL	ENSG00000106299.8	ENST00000223023.5	protein_coding	protein_coding	protein_coding	protein_coding	41	347	2	1.79764	2.2515099999999997	2.70538	4.38135e-4	1.78497e-5	0.0188729	0.00342625
chr11	57784442	57784542	4793358	0	+	0.37	(0.35,0.378]	chr11	443721	24	INTRON	INTRON	ENSG00000288534:CTNND1	ENSG00000288534.1:ENSG00000198561.16	ENST00000673781.1:ENST00000673810.1:ENST00000674116.1:ENST00000674060.1:ENST00000524630.5:ENST00000529919.5:ENST00000533189.1:ENST00000682741.1:ENST00000358694.10:ENST00000361332.8:ENST00000361391.10:ENST00000361796.9:ENST00000415361.6:ENST00000426142.6:ENST00000428599.6:ENST00000525902.5:ENST00000526357.5:ENST00000526772.5:ENST00000527467.5:ENST00000528232.5:ENST00000528621.5:ENST00000529526.5:ENST00000529873.5:ENST00000529986.5:ENST00000530094.5:ENST00000530748.5:ENST00000531014.5:ENST00000532245.5:ENST00000532463.5:ENST00000532649.5:ENST00000532787.5:ENST00000532844.5:ENST00000533667.5:ENST00000534579.5:ENST00000399050.10:ENST00000526938.5:ENST00000531007.2:ENST00000674015.1:ENST00000673826.1:ENST00000673683.1:ENST00000674106.1:ENST00000530068.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	113	2	1.81298	2.25149	2.69	0.0116735	0.00107271	0.0891371	0.0300133
chr3	60195132	60195232	1711565	0	-	0.41	(0.408,0.44]	chr3	176138	1144	INTRON	INTRON	FHIT	ENSG00000189283.10	ENST00000492590.6:ENST00000476844.5:ENST00000468189.5:ENST00000488467.5	protein_coding	protein_coding	protein_coding	protein_coding	5	62	2	1.93002	2.251485	2.57295	0.022095	0.00640423	0.123903	0.0694534
chr7	156826666	156826744	3687347	0	-	0.461538	(0.44,0.476]	chr7	342073	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	LMBR1	ENSG00000105983.23	ENST00000353442.10:ENST00000415428.5:ENST00000454132.5:ENST00000434503.5:ENST00000430278.5:ENST00000434278.5:ENST00000444719.5:ENST00000461469.5:ENST00000414218.1:ENST00000434453.1:ENST00000498034.5:ENST00000433968.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	94	2	2.2193	2.2514849999999997	2.28367	0.00896114	0.00160306	0.0800073	0.0367961
chr14	81220694	81220782	5935900	0	-	0.568182	(0.515,0.57]	chr14	564170	3	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	GTF2A1	ENSG00000165417.12	ENST00000553612.6:ENST00000298173.7:ENST00000434192.2:ENST00000556268.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	19	187	2	2.09935	2.251475	2.4036	7.8216e-4	1.20894e-4	0.0257363	0.0093979
chr6	107909347	107909441	3182350	0	-	0.340426	(0.32,0.35]	chr6	296427	3	SS3_PROX	SS3_PROX:INTRON	SEC63	ENSG00000025796.14	ENST00000369002.9:ENST00000429168.1	protein_coding	protein_coding	protein_coding	protein_coding	4	53	2	1.93031	2.2514700000000003	2.57263	0.0312297	0.0231421	0.13151	0.126939
chr7	118191716	118191813	3393225	0	+	0.329897	(0.32,0.35]	chr7	317586	35	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	LSM8	ENSG00000128534.8	ENST00000424702.1:ENST00000422760.1:ENST00000249299.7	protein_coding	protein_coding	protein_coding	protein_coding	4	53	2	1.93031	2.2514700000000003	2.57263	0.0312297	0.0231421	0.13151	0.126939
chr1	58686945	58687044	467700	0	-	0.30303	(0.28,0.32]	chr1	56472	13	INTRON	INTRON	MYSM1	ENSG00000162601.11	ENST00000655340.1:ENST00000493821.6:ENST00000472487.6:ENST00000665648.1:ENST00000659812.1:ENST00000659108.1:ENST00000401044.7:ENST00000660611.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	58	2	1.98806	2.25147	2.51488	0.0380957	0.0199553	0.141678	0.120668
chr22	45174506	45174605	7529974	0	+	0.282828	(0.28,0.32]	chr22	769885	21	INTRON	INTRON	NUP50	ENSG00000093000.19	ENST00000347635.9:ENST00000407019.6:ENST00000430547.5:ENST00000434760.5:ENST00000493456.5:ENST00000396096.6:ENST00000419387.5:ENST00000422489.1:ENST00000486184.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	66	2	1.72287	2.251455	2.78004	0.0286502	0.0193244	0.139456	0.108861
chr9	122283081	122283180	4194292	0	+	0.444444	(0.44,0.476]	chr9	382681	21	INTRON	INTRON	MRRF	ENSG00000148187.18	ENST00000297908.7:ENST00000344641.8:ENST00000441707.5:ENST00000373723.9:ENST00000373729.5:ENST00000373728.6:ENST00000373727.5:ENST00000470366.5:ENST00000373724.1:ENST00000467864.5:ENST00000489572.5:ENST00000394315.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	51	2	1.9039	2.25139	2.59888	0.0501498	0.00487719	0.156383	0.0640618
chr8	90367566	90367666	3793771	0	+	0.46	(0.44,0.476]	chr8	351792	155	INTRON	INTRON	LINC00534	ENSG00000253394.7	ENST00000662145.1:ENST00000655523.1:ENST00000517400.6:ENST00000658299.1:ENST00000663329.1:ENST00000658342.1:ENST00000523283.6:ENST00000655219.1:ENST00000662692.1:ENST00000667296.1:ENST00000667565.1:ENST00000523406.2:ENST00000659030.1:ENST00000653734.1:ENST00000654785.1:ENST00000524361.5:ENST00000668745.1:ENST00000661519.1:ENST00000671657.1:ENST00000655123.1:ENST00000663098.1:ENST00000670903.1:ENST00000654946.1	lncRNA	lncRNA	lncRNA	lncRNA	5	61	2	1.90381	2.2513449999999997	2.59888	0.0260626	0.00487719	0.122153	0.0640618
chr1	12254905	12255002	28479	0	+	0.453608	(0.44,0.476]	chr1	3407	7	INTRON	INTRON	VPS13D	ENSG00000048707.15	ENST00000620676.6:ENST00000613099.4:ENST00000489961.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	140	2	2.15426	2.25131	2.34836	0.00372059	4.44954e-4	0.0535094	0.0191013
chr5	139346200	139346300	2499826	0	+	0.37	(0.35,0.378]	chr5	238989	24	INTRON	INTRON	PAIP2	ENSG00000120727.13	ENST00000507755.5:ENST00000265192.9:ENST00000510409.1:ENST00000511381.1:ENST00000511706.5:ENST00000507415.1:ENST00000394795.6:ENST00000510080.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	51	2	1.70607	2.2512499999999998	2.79643	0.0482819	0.013543	0.153283	0.101363
chrX	154691923	154692023	7914720	0	-	0.36	(0.35,0.378]	chrX	806068	113	INTRON	INTRON	GAB3	ENSG00000160219.12	ENST00000496390.5:ENST00000424127.3:ENST00000369575.7:ENST00000369568.8:ENST00000475685.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	51	2	1.70607	2.2512499999999998	2.79643	0.0482819	0.013543	0.153283	0.101363
chr16	85670627	85670718	6416563	0	+	0.32967	(0.32,0.35]	chr16	615556	1	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	GSE1	ENSG00000131149.19	ENST00000405402.6:ENST00000253458.12:ENST00000393243.5:ENST00000412692.5:ENST00000469381.1:ENST00000438180.1:ENST00000496345.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	44	2	1.81328	2.251245	2.68921	0.0615716	0.0230336	0.193423	0.118056
chr2	121587783	121587883	1221772	0	-	0.35	(0.32,0.35]	chr2	130051	571	INTRON	INTRON	CLASP1	ENSG00000074054.20	ENST00000263710.8:ENST00000397587.7:ENST00000541377.5:ENST00000409078.8:ENST00000455322.6	protein_coding	protein_coding	protein_coding	protein_coding	3	44	2	1.81328	2.251245	2.68921	0.0615716	0.0230336	0.193423	0.118056
chr7	156823626	156823725	3687315	0	-	0.343434	(0.32,0.35]	chr7	342065	15	UTR3	UTR3:EXON_MRNA:INTRON	LMBR1	ENSG00000105983.23	ENST00000353442.10:ENST00000415428.5:ENST00000454132.5:ENST00000434503.5:ENST00000430278.5:ENST00000434278.5:ENST00000444719.5:ENST00000461469.5:ENST00000414218.1:ENST00000434453.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	44	2	1.81328	2.251245	2.68921	0.0615716	0.0230336	0.193423	0.118056
chr5	159163005	159163079	2758716	0	-	0.378378	(0.378,0.408]	chr5	260323	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RNF145	ENSG00000145860.12	ENST00000424310.7:ENST00000519865.5:ENST00000274542.6:ENST00000611185.4:ENST00000521606.6:ENST00000518802.5:ENST00000520638.1:ENST00000518062.1:ENST00000521266.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	64	2	2.11194	2.2512100000000004	2.39048	0.0292534	0.00395852	0.128055	0.057511
chr1	65366795	65366894	136669	0	+	0.30303	(0.28,0.32]	chr1	15376	2	INTRON	INTRON	DNAJC6	ENSG00000116675.16	ENST00000494710.6:ENST00000263441.11:ENST00000395325.7:ENST00000371069.5:ENST00000472787.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	48	2	1.76293	2.2511900000000002	2.73945	0.0766478	0.017681	0.196164	0.11319
chr11	108158269	108158365	5034523	0	-	0.291667	(0.28,0.32]	chr11	474373	12	UTR3	UTR3:EXON_MRNA	NPAT	ENSG00000149308.17	ENST00000278612.9	protein_coding	protein_coding	protein_coding	protein_coding	3	48	2	1.76293	2.2511900000000002	2.73945	0.0766478	0.017681	0.196164	0.11319
chr17	40409327	40409425	6768284	0	-	0.316327	(0.28,0.32]	chr17	665968	3	INTRON	INTRON	TOP2A	ENSG00000131747.15	ENST00000423485.6	protein_coding	protein_coding	protein_coding	protein_coding	11	162	2	1.56192	2.251095	2.94027	0.0264715	1.48354e-4	0.122554	0.0105826
chr17	30147903	30148003	6587701	0	+	0.5	(0.476,0.515]	chr17	640563	198	INTRON	INTRON	NSRP1	ENSG00000126653.18	ENST00000540900.7:ENST00000612959.4:ENST00000247026.10:ENST00000577289.6:ENST00000584154.5:ENST00000394826.8:ENST00000475652.5:ENST00000584317.5:ENST00000583301.5:ENST00000585881.5:ENST00000467446.6:ENST00000580103.6:ENST00000581048.5:ENST00000588614.1:ENST00000589608.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	45	2	1.61586	2.25108	2.8863	0.0567093	0.0111679	0.185107	0.0877435
chr7	50789559	50789658	3532650	0	-	0.50505	(0.476,0.515]	chr7	329547	68	INTRON	INTRON	GRB10	ENSG00000106070.20	ENST00000335866.7:ENST00000644769.1:ENST00000644879.1:ENST00000402497.6:ENST00000645075.2:ENST00000439044.7:ENST00000644716.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	45	2	1.61586	2.25108	2.8863	0.0567093	0.0111679	0.185107	0.0877435
chr17	37212976	37213076	6761062	0	-	0.44	(0.408,0.44]	chr17	664773	21	INTRON	INTRON	ACACA	ENSG00000278540.5	ENST00000616317.5:ENST00000614428.4:ENST00000612895.4:ENST00000617649.4:ENST00000614450.4:ENST00000612120.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	51	2	2.00228	2.251055	2.49983	0.0389732	0.00713527	0.143072	0.0756118
chr22	19464104	19464204	7554743	0	-	0.46	(0.44,0.476]	chr22	772371	56	INTRON	INTRON	UFD1	ENSG00000070010.19	ENST00000263202.15:ENST00000399523.5:ENST00000459854.5:ENST00000466373.1:ENST00000447868.5:ENST00000421968.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	51	2	2.21079	2.251025	2.29126	0.0194581	0.0165638	0.119831	0.102621
chr10	6167207	6167307	4386217	0	+	0.54	(0.515,0.57]	chr10	404834	28	INTRON	INTRON	PFKFB3	ENSG00000170525.21	ENST00000379789.8:ENST00000536985.6:ENST00000639949.1	protein_coding	protein_coding	protein_coding	protein_coding	5	52	2	2.11724	2.251	2.38476	0.0110593	0.0110335	0.0927187	0.0873897
chr1	26470317	26470416	50588	0	+	0.535354	(0.515,0.57]	chr1	6370	13	UTR3	UTR3:EXON_MRNA	DHDDS	ENSG00000117682.17	ENST00000434391.6:ENST00000236342.12:ENST00000360009.6:ENST00000431933.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	87	2	1.76853	2.250995	2.73346	0.0102412	8.38802e-4	0.089002	0.0266487
chr3	196068711	196068792	1897412	0	-	0.493827	(0.476,0.515]	chr3	189951	2	INTRON	INTRON	TFRC	ENSG00000072274.13	ENST00000420415.5:ENST00000360110.9:ENST00000392396.7:ENST00000491658.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	45	484	2	2.17341	2.250965	2.32852	1.69566e-4	4.71412e-5	0.011961	0.00560513
chr4	126623388	126623488	2236943	0	-	0.44	(0.408,0.44]	chr4	219023	1579	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	12	126	2	1.90695	2.2509099999999997	2.59487	0.00257393	0.00202403	0.0467319	0.04086
chr17	75141202	75141301	6835946	0	-	0.454545	(0.44,0.476]	chr17	675456	46	INTRON	INTRON	JPT1	ENSG00000189159.16	ENST00000409753.8:ENST00000476258.5:ENST00000482348.5:ENST00000304834.11:ENST00000356033.8:ENST00000470924.5:ENST00000481094.1:ENST00000481647.5:ENST00000580380.1:ENST00000581874.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	71	2	2.24189	2.2509050000000004	2.25992	0.0193405	0.00324123	0.108861	0.0524329
chr1	6699128	6699228	369047	0	-	0.53	(0.515,0.57]	chr1	43369	69	INTRON	INTRON	DNAJC11	ENSG00000007923.17	ENST00000377577.10:ENST00000690452.1:ENST00000685129.1:ENST00000472414.2:ENST00000688524.1:ENST00000686243.1:ENST00000690062.1:ENST00000689474.1:ENST00000294401.11:ENST00000426784.1:ENST00000473993.5:ENST00000685485.1:ENST00000691444.1:ENST00000688162.1:ENST00000485073.5:ENST00000460594.5:ENST00000693337.1:ENST00000465911.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	34	2	2.15051	2.25088	2.35125	0.0436431	0.0238113	0.162255	0.118889
chr1	45640803	45640903	440118	0	-	0.52	(0.515,0.57]	chr1	53324	4	SS3_PROX	SS3_PROX:INTRON	GPBP1L1	ENSG00000159592.11	ENST00000290795.7:ENST00000355105.8	protein_coding	protein_coding	protein_coding	protein_coding	3	34	2	2.15051	2.25088	2.35125	0.0436431	0.0238113	0.162255	0.118889
chr1	184748447	184748546	601128	0	-	0.232323	[0,0.28]	chr1	71676	13	INTRON	INTRON	EDEM3	ENSG00000116406.20	ENST00000318130.13:ENST00000367512.8:ENST00000689766.1:ENST00000686047.1:ENST00000687113.1:ENST00000686225.1:ENST00000685596.1:ENST00000685249.1:ENST00000692170.1:ENST00000689946.1:ENST00000474725.5:ENST00000693477.1:ENST00000692182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	54	2	2.00649	2.25088	2.49527	0.0436497	0.040391	0.161534	0.14882
chr4	158864149	158864248	2073051	0	+	0.535354	(0.515,0.57]	chr4	205135	20	INTRON	INTRON	FNIP2	ENSG00000052795.13	ENST00000264433.11:ENST00000512986.5	protein_coding	protein_coding	protein_coding	protein_coding	3	34	2	2.15051	2.25088	2.35125	0.0436431	0.0238113	0.162255	0.118889
chr6	85635768	85635868	3151375	0	-	0.27	[0,0.28]	chr6	293889	113	INTRON	INTRON	ENSG00000271793:SYNCRIP	ENSG00000271793.2:ENSG00000135316.19	ENST00000682083.1:ENST00000683074.1:ENST00000681965.1:ENST00000682504.1:ENST00000682106.1:ENST00000683364.1:ENST00000683436.1:ENST00000684220.1:ENST00000683909.1:ENST00000684462.1:ENST00000616122.5:ENST00000678528.1:ENST00000676637.1:ENST00000677771.1:ENST00000355238.11:ENST00000678878.1:ENST00000677481.1:ENST00000677646.1:ENST00000676630.1:ENST00000678618.1:ENST00000676542.1:ENST00000677059.1:ENST00000444272.2:ENST00000678899.1:ENST00000369622.8:ENST00000678355.1:ENST00000676688.1:ENST00000677514.1:ENST00000678816.1:ENST00000678930.1:ENST00000678589.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	139	2	1.89635	2.250835	2.60532	0.0161478	0.00226845	0.101453	0.0437013
chr6	4789404	4789504	2790992	0	+	0.63	(0.57,1]	chr6	263598	122	INTRON	INTRON	CDYL	ENSG00000153046.18	ENST00000328908.9:ENST00000491864.1:ENST00000440139.5:ENST00000483019.1:ENST00000397588.8:ENST00000472453.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	11	57	2	1.69107	2.25082	2.81057	0.00609159	0.00169295	0.0676501	0.0381936
chr6	119210379	119210479	3204419	0	-	0.32	(0.28,0.32]	chr6	298302	51	INTRON	INTRON	MAN1A1	ENSG00000111885.7	ENST00000368468.4	protein_coding	protein_coding	protein_coding	protein_coding	3	48	2	2.24061	2.250755	2.2609	0.0671429	0.0194267	0.183051	0.119831
chrX	44874187	44874287	7648612	0	+	0.55	(0.515,0.57]	chrX	782725	2	SS5_PROX	SS5_PROX:INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000675440.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000621147.5:ENST00000475233.1:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	64	2	1.811	2.25074	2.69048	0.0325989	8.78655e-4	0.133687	0.0269932
chr1	153901880	153901980	557556	0	-	0.57	(0.515,0.57]	chr1	65995	25	INTRON	INTRON	GATAD2B	ENSG00000143614.10	ENST00000368655.5:ENST00000634544.1:ENST00000634408.1:ENST00000634401.1:ENST00000634791.1:ENST00000637331.1:ENST00000636008.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	40	2	1.75372	2.2507200000000003	2.74772	0.0386904	0.0142192	0.14279	0.103638
chr19	2203279	2203377	6996573	0	+	0.561224	(0.515,0.57]	chr19	693473	1	INTRON	INTRON	DOT1L	ENSG00000104885.19	ENST00000398665.8:ENST00000686010.1	protein_coding	protein_coding	protein_coding	protein_coding	11	110	2	2.19285	2.2507099999999998	2.30857	0.00258921	7.37051e-4	0.0452934	0.0247924
chr16	23566311	23566408	6323149	0	+	0.360825	(0.35,0.378]	chr16	605564	15	EXON_MRNA	EXON_MRNA:INTRON	UBFD1	ENSG00000103353.16	ENST00000567212.5:ENST00000395878.8:ENST00000563366.5:ENST00000565634.5:ENST00000564106.1:ENST00000566136.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	69	2	1.46325	2.250695	3.03814	0.0346125	0.00767003	0.148144	0.075364
chr19	18434374	18434468	7033079	0	+	0.425532	(0.408,0.44]	chr19	700883	2	UTR3	UTR3:EXON_MRNA	SSBP4	ENSG00000130511.16	ENST00000348495.10:ENST00000270061.12:ENST00000593641.3:ENST00000599699.2	protein_coding	protein_coding	protein_coding	protein_coding	5	52	2	1.60344	2.250695	2.89795	0.0387506	0.0110735	0.160156	0.0873897
chr8	29241648	29241748	3930972	0	-	0.43	(0.408,0.44]	chr8	360038	451	INTRON	INTRON	KIF13B	ENSG00000197892.13	ENST00000524189.6:ENST00000522355.5:ENST00000521515.1:ENST00000523968.1:ENST00000522846.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	52	2	1.60344	2.250695	2.89795	0.0387506	0.0110735	0.160156	0.0873897
chr1	61724617	61724709	468372	0	-	0.380435	(0.378,0.408]	chr1	56589	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TM2D1	ENSG00000162604.12	ENST00000606498.5:ENST00000294613.9:ENST00000371180.6:ENST00000488206.5:ENST00000468586.5:ENST00000371178.5:ENST00000494926.5:ENST00000496465.1:ENST00000371177.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	29	2	2.13703	2.250655	2.36428	0.0797592	0.0441088	0.19979	0.162255
chr1	153885223	153885323	557388	0	-	0.38	(0.378,0.408]	chr1	65983	565	INTRON	INTRON	GATAD2B	ENSG00000143614.10	ENST00000368655.5:ENST00000634544.1:ENST00000634408.1:ENST00000634401.1:ENST00000634791.1:ENST00000636014.1:ENST00000637331.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	29	2	2.13703	2.250655	2.36428	0.0797592	0.0441088	0.19979	0.162255
chr16	56384518	56384618	6490858	0	-	0.39	(0.378,0.408]	chr16	627673	148	INTRON	INTRON	AMFR	ENSG00000159461.15	ENST00000290649.10:ENST00000492830.5:ENST00000567738.1:ENST00000566334.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	29	2	2.13703	2.250655	2.36428	0.0797592	0.0441088	0.19979	0.162255
chr2	121433269	121433369	1220198	0	-	0.38	(0.378,0.408]	chr2	129918	27	INTRON	INTRON	CLASP1	ENSG00000074054.20	ENST00000263710.8:ENST00000397587.7:ENST00000541377.5:ENST00000409078.8:ENST00000455322.6:ENST00000452274.6	protein_coding	protein_coding	protein_coding	protein_coding	2	29	2	2.13703	2.250655	2.36428	0.0797592	0.0441088	0.19979	0.162255
chr3	48929610	48929710	1421562	0	+	0.38	(0.378,0.408]	chr3	149480	14	INTRON	INTRON	ARIH2	ENSG00000177479.20	ENST00000478224.5:ENST00000430423.5:ENST00000452882.5:ENST00000498314.5:ENST00000474618.5:ENST00000449376.5:ENST00000490095.5:ENST00000356401.9:ENST00000495761.5:ENST00000483333.5:ENST00000482427.5:ENST00000488963.5:ENST00000420814.5:ENST00000486316.5:ENST00000474936.6:ENST00000484999.5:ENST00000470296.5:ENST00000463204.5:ENST00000452385.5:ENST00000495507.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	29	2	2.13703	2.250655	2.36428	0.0797592	0.0441088	0.19979	0.162255
chr5	134750850	134750950	2490361	0	+	0.39	(0.378,0.408]	chr5	237869	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	CAMLG	ENSG00000164615.6	ENST00000678771.1:ENST00000676819.1:ENST00000677273.1:ENST00000676829.1:ENST00000297156.4:ENST00000514518.1:ENST00000677966.1:ENST00000676928.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	29	2	2.13703	2.250655	2.36428	0.0797592	0.0441088	0.19979	0.162255
chr7	77695895	77695990	3563504	0	-	0.4	(0.378,0.408]	chr7	332039	1	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	APTR	ENSG00000214293.10	ENST00000659053.1:ENST00000440088.5:ENST00000665948.1:ENST00000430801.6:ENST00000663454.1:ENST00000664660.1:ENST00000654794.2:ENST00000663654.2:ENST00000398043.3:ENST00000687850.1:ENST00000690779.1:ENST00000687769.1:ENST00000416650.5:ENST00000447009.1	lncRNA	lncRNA	lncRNA	lncRNA	2	29	2	2.13703	2.250655	2.36428	0.0797592	0.0441088	0.19979	0.162255
chr7	107401117	107401217	3611395	0	-	0.38	(0.378,0.408]	chr7	336688	280	INTRON	INTRON	COG5	ENSG00000164597.15	ENST00000297135.9:ENST00000347053.8:ENST00000393603.7:ENST00000484237.5:ENST00000475638.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	29	2	2.13703	2.250655	2.36428	0.0797592	0.0441088	0.19979	0.162255
chr8	52646367	52646466	3950409	0	-	0.40404	(0.378,0.408]	chr8	362312	1	INTRON	INTRON	RB1CC1	ENSG00000023287.13	ENST00000025008.10:ENST00000435644.6:ENST00000521611.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	29	2	2.13703	2.250655	2.36428	0.0797592	0.0441088	0.19979	0.162255
chr8	26326424	26326523	3716446	0	+	0.373737	(0.35,0.378]	chr8	345376	6	INTRON	INTRON	PPP2R2A	ENSG00000221914.11	ENST00000380737.8:ENST00000520329.5:ENST00000518254.5:ENST00000524169.5:ENST00000518397.5:ENST00000522535.5:ENST00000665949.1:ENST00000522150.5:ENST00000523473.5:ENST00000521095.5:ENST00000660435.1:ENST00000523925.5:ENST00000524099.5:ENST00000315985.7:ENST00000519636.5:ENST00000522482.5:ENST00000521557.5:ENST00000519439.5:ENST00000521484.5:ENST00000523964.5:ENST00000667651.1:ENST00000657943.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	74	2	1.28674	2.2506500000000003	3.21456	0.050599	0.00420814	0.17547	0.0572185
chr6	147686618	147686717	2990862	0	+	0.252525	[0,0.28]	chr6	280163	101	INTRON	INTRON	ENSG00000227681	ENSG00000227681.5	ENST00000427015.1:ENST00000432506.5:ENST00000442094.5	lncRNA	lncRNA	lncRNA	lncRNA	5	89	2	2.22743	2.250635	2.27384	0.0233847	0.0097118	0.11839	0.0875962
chr7	130050488	130050588	3638323	0	-	0.3	(0.28,0.32]	chr7	338332	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	ZC3HC1	ENSG00000091732.17	ENST00000311873.9:ENST00000358303.9:ENST00000360708.9:ENST00000467642.5:ENST00000648450.1:ENST00000481503.5:ENST00000471022.5:ENST00000483827.1:ENST00000480193.5:ENST00000470651.1:ENST00000484432.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	68	2	1.96475	2.250615	2.53648	0.0428385	0.00925866	0.162255	0.0817766
chr1	11789850	11789949	378765	0	-	0.575758	(0.57,1]	chr1	44427	43	UTR3	UTR3:EXON_MRNA	MTHFR	ENSG00000177000.13	ENST00000376590.9:ENST00000376592.6:ENST00000376583.7:ENST00000376585.6:ENST00000641747.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	74	2	2.01786	2.25061	2.48336	0.00313784	2.06996e-4	0.0514466	0.0131276
chr17	82535381	82535481	6692761	0	+	0.42	(0.408,0.44]	chr17	654627	147	INTRON	INTRON	FOXK2	ENSG00000141568.21	ENST00000473637.6:ENST00000335255.10:ENST00000527313.6:ENST00000570585.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	52	2	1.49523	2.25059	3.00595	0.0534846	0.00781452	0.180041	0.0759016
chr7	32884614	32884713	3515552	0	-	0.464646	(0.44,0.476]	chr7	327782	43	INTRON	INTRON	KBTBD2	ENSG00000170852.12	ENST00000304056.9:ENST00000485611.5:ENST00000452926.1:ENST00000453627.1:ENST00000423022.1:ENST00000424468.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	119	2	1.93083	2.250375	2.56992	0.00932249	0.00035449500000000003	0.0817766	0.0168579
chr15	64487106	64487206	6044353	0	+	0.24	[0,0.28]	chr15	575688	259	INTRON	INTRON	ZNF609	ENSG00000180357.10	ENST00000326648.5:ENST00000416172.1	protein_coding	protein_coding	protein_coding	protein_coding	2	40	2	2.20927	2.2503450000000003	2.29142	0.0794763	0.0592143	0.19979	0.189982
chr5	177143201	177143301	2553794	0	+	0.28	[0,0.28]	chr5	243927	59	INTRON	INTRON	NSD1	ENSG00000165671.22	ENST00000508896.6:ENST00000689549.1:ENST00000354179.9:ENST00000686993.1:ENST00000689326.1:ENST00000439151.7:ENST00000510954.6:ENST00000689345.1:ENST00000347982.9:ENST00000687453.1:ENST00000685206.1:ENST00000638627.3:ENST00000644863.2:ENST00000688613.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	40	2	2.20927	2.2503450000000003	2.29142	0.0794763	0.0592143	0.19979	0.189982
chr6	87166689	87166788	2913368	0	+	0.262626	[0,0.28]	chr6	275276	106	INTRON	INTRON	ZNF292	ENSG00000188994.13	ENST00000392985.3:ENST00000369577.8:ENST00000369578.6:ENST00000518845.1:ENST00000339907.8:ENST00000496806.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	40	2	2.20927	2.2503450000000003	2.29142	0.0794763	0.0592143	0.19979	0.189982
chr9	124376300	124376400	4346259	0	-	0.27	[0,0.28]	chr9	399153	190	INTRON	INTRON	PSMB7	ENSG00000136930.13	ENST00000259457.8:ENST00000498485.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	40	2	2.20927	2.2503450000000003	2.29142	0.0794763	0.0592143	0.19979	0.189982
chr16	2757945	2758045	6279874	0	+	0.42	(0.408,0.44]	chr16	600775	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SRRM2	ENSG00000167978.17	ENST00000576924.5:ENST00000301740.13:ENST00000575009.5:ENST00000576894.5:ENST00000630499.2:ENST00000576415.5:ENST00000571378.5:ENST00000570971.2:ENST00000575870.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	78	2	1.70933	2.250285	2.79124	0.0189186	0.00276922	0.118303	0.0469265
chrX	71539670	71539770	7680013	0	+	0.53	(0.515,0.57]	chrX	786397	12	INTRON	INTRON	OGT	ENSG00000147162.14	ENST00000373719.8:ENST00000488174.5:ENST00000373701.7:ENST00000498566.3:ENST00000444774.3:ENST00000455587.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	28	248	2	1.67022	2.25026	2.8303	0.0018493	1.58067e-5	0.039946	0.00318411
chr7	111252100	111252200	3621003	0	-	0.36	(0.35,0.378]	chr7	337093	2882	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	67	2	1.97646	2.2502050000000002	2.52395	0.0193942	0.00824736	0.119831	0.0773378
chr1	28912950	28913049	58939	0	+	0.484848	(0.476,0.515]	chr1	7617	188	INTRON	INTRON	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000647918.1:ENST00000646800.1:ENST00000644342.1:ENST00000646189.1:ENST00000482464.6:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000646260.1:ENST00000373798.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	106	2	1.90361	2.250165	2.59672	0.0102027	6.3664e-4	0.0850389	0.0228285
chr6	47502282	47502381	2873810	0	+	0.393939	(0.378,0.408]	chr6	272725	133	INTRON	INTRON	CD2AP	ENSG00000198087.7	ENST00000359314.5	protein_coding	protein_coding	protein_coding	protein_coding	6	74	2	2.21238	2.250155	2.28793	0.0218124	0.00291235	0.11491	0.0494641
chr1	30978273	30978372	412011	0	-	0.353535	(0.35,0.378]	chr1	49687	31	INTRON	INTRON	PUM1	ENSG00000134644.16	ENST00000426105.7:ENST00000373747.7:ENST00000257075.9:ENST00000424085.6:ENST00000525843.5:ENST00000440538.6:ENST00000498419.5:ENST00000373741.8:ENST00000373742.6:ENST00000490546.1:ENST00000532678.1:ENST00000526128.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	63	2	1.55918	2.250145	2.94111	0.0326427	0.0104563	0.145164	0.0855102
chr15	28671159	28671259	5988763	0	+	0.46	(0.44,0.476]	chr15	569389	3	SS3_PROX	SS3_PROX:INTRON	HERC2P9	ENSG00000206149.11	ENST00000529624.5:ENST00000530420.5:ENST00000528584.5	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript:transcribed_unprocessed_pseudogene	22	250	2	1.85949	2.250135	2.64078	0.00230303	3.3751e-5	0.0428247	0.0046443
chr7	111557954	111558054	3624071	0	-	0.3	(0.28,0.32]	chr7	337133	250	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000452895.5:ENST00000447215.5:ENST00000492938.1:ENST00000452753.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	65	2	2.24061	2.25	2.25939	0.021772	0.0194267	0.119831	0.11491
chr5	6728313	6728413	2315984	0	+	0.54	(0.515,0.57]	chr5	224267	128	INTRON	INTRON	TENT4A	ENSG00000112941.14	ENST00000230859.8:ENST00000515721.1:ENST00000631941.2	protein_coding	protein_coding	protein_coding	protein_coding	5	52	2	2.06206	2.249945	2.43783	0.0135396	0.00916404	0.101363	0.0812949
chr12	56640789	56640886	5335758	0	-	0.474227	(0.44,0.476]	chr12	510122	2	INTRON	INTRON	ATP5F1B	ENSG00000110955.9	ENST00000262030.8:ENST00000548474.2:ENST00000547808.5:ENST00000547250.5:ENST00000551020.5:ENST00000550162.1:ENST00000552959.5:ENST00000551570.5:ENST00000553007.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	70	2	1.76195	2.24988	2.73781	0.0252608	0.00276493	0.12011	0.04867
chr7	141756174	141756274	3440282	0	+	0.38	(0.378,0.408]	chr7	320701	54	INTRON	INTRON	SSBP1	ENSG00000106028.11	ENST00000465582.5	protein_coding	protein_coding	protein_coding	protein_coding	3	39	2	2.11103	2.24988	2.38873	0.0458857	0.0266911	0.149888	0.134419
chr3	50105909	50106009	1424664	0	+	0.44	(0.408,0.44]	chr3	150150	2	SS5_PROX	SS5_PROX:INTRON	RBM5	ENSG00000003756.17	ENST00000347869.8:ENST00000464087.6:ENST00000395174.6:ENST00000496179.5:ENST00000471995.5:ENST00000474818.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	48	2	2.22268	2.24983	2.27698	0.0583528	0.00770925	0.167723	0.0784002
chr10	119063214	119063313	4704745	0	-	0.444444	(0.44,0.476]	chr10	433984	15	INTRON	INTRON	EIF3A	ENSG00000107581.13	ENST00000369144.8:ENST00000541549.2	protein_coding	protein_coding	protein_coding	protein_coding	7	86	2	1.56252	2.24978	2.93704	0.0465207	2.76819e-4	0.151387	0.0148174
chr1	6582895	6582991	5341	0	+	0.552083	(0.515,0.57]	chr1	1034	2	INTRON	INTRON	ZBTB48	ENSG00000204859.13	ENST00000377674.9:ENST00000488936.1	protein_coding	protein_coding	protein_coding	protein_coding	3	33	2	2.23915	2.249635	2.26012	0.0596178	0.0160033	0.16883600000000001	0.109464
chr12	51010101	51010194	5324630	0	-	0.548387	(0.515,0.57]	chr12	507731	10	INTRON	INTRON	SLC11A2	ENSG00000110911.17	ENST00000547688.7:ENST00000644495.1:ENST00000643884.1:ENST00000546636.5:ENST00000547198.5:ENST00000394904.9:ENST00000262052.9:ENST00000643123.1:ENST00000646740.1:ENST00000642227.1:ENST00000541174.6:ENST00000546743.5:ENST00000547510.5:ENST00000546488.5:ENST00000547579.5:ENST00000550714.5:ENST00000547732.5:ENST00000548193.5:ENST00000646988.1:ENST00000549625.1:ENST00000681324.1:ENST00000550995.5:ENST00000550329.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	33	2	2.23915	2.249635	2.26012	0.0596178	0.0160033	0.16883600000000001	0.109464
chr5	32160660	32160760	2597379	0	-	0.39	(0.378,0.408]	chr5	246744	164	INTRON	INTRON	GOLPH3	ENSG00000113384.14	ENST00000265070.7:ENST00000503610.5:ENST00000512668.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	53	2	1.88729	2.249585	2.61188	0.0532327	0.0047055	0.162538	0.0631419
chr14	19335051	19335151	5832378	0	-	0.39	(0.378,0.408]	chr14	553818	3	SS5_PROX	SS5_PROX:INTRON	DUXAP10	ENSG00000244306.11	ENST00000648085.1:ENST00000614614.4:ENST00000612696.4:ENST00000619784.4:ENST00000616922.4:ENST00000624585.3:ENST00000549065.5:ENST00000610531.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	3	39	2	1.89621	2.2495849999999997	2.60296	0.0488044	0.0267851	0.173377	0.123349
chr20	31752618	31752718	7253794	0	+	0.56	(0.515,0.57]	chr20	736731	96	INTRON	INTRON	TPX2	ENSG00000088325.16	ENST00000340513.4:ENST00000300403.11	protein_coding	protein_coding	protein_coding	protein_coding	8	72	2	1.65501	2.24944	2.84387	0.016231	0.0018149	0.109464	0.0384415
chr19	811857	811951	6992256	0	+	0.574468	(0.57,1]	chr19	692278	12	UTR3	UTR3:EXON_MRNA	PTBP1	ENSG00000011304.22	ENST00000635647.1:ENST00000627714.2:ENST00000676227.1:ENST00000677277.1:ENST00000349038.8:ENST00000356948.11:ENST00000394601.8:ENST00000679114.1:ENST00000350092.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	51	289	2	1.84634	2.2494199999999998	2.6525	1.5473e-4	5.26048e-7	0.0106835	4.21981e-4
chr1	11017307	11017407	24605	0	+	0.49	(0.476,0.515]	chr1	2582	3	SS5_PROX	SS5_PROX:INTRON	TARDBP	ENSG00000120948.19	ENST00000473118.5:ENST00000639083.1:ENST00000639599.1:ENST00000629725.2:ENST00000439080.6:ENST00000240185.8:ENST00000472476.5:ENST00000476201.5:ENST00000613864.4:ENST00000614757.4:ENST00000621715.4:ENST00000473869.5:ENST00000315091.7:ENST00000616545.4:ENST00000621790.4:ENST00000649624.1:ENST00000622057.4:ENST00000617172.4:ENST00000618606.1:ENST00000611963.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	46	2	1.69138	2.2493350000000003	2.80729	0.0481165	0.0126008	0.153019	0.0980703
chr1	50771827	50771927	450368	0	-	0.48	(0.476,0.515]	chr1	54249	267	INTRON	INTRON	FAF1	ENSG00000185104.21	ENST00000396153.7:ENST00000487898.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	46	2	1.69138	2.2493350000000003	2.80729	0.0481165	0.0126008	0.153019	0.0980703
chr9	37194946	37195046	4118406	0	+	0.49	(0.476,0.515]	chr9	375389	80	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000461038.5:ENST00000488607.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	46	2	1.69138	2.2493350000000003	2.80729	0.0481165	0.0126008	0.153019	0.0980703
chr1	1709740	1709840	361056	0	-	0.63	(0.57,1]	chr1	42069	1	SS3_PROX	SS3_PROX:INTRON	CDK11A:ENSG00000268575	ENSG00000008128.23:ENSG00000268575.1	ENST00000404249.8:ENST00000356200.7:ENST00000598846.1:ENST00000357760.6:ENST00000358779.9:ENST00000378633.5:ENST00000460465.5:ENST00000509982.5:ENST00000378638.6:ENST00000356937.7	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA	3	21	2	2.13445	2.24928	2.36411	0.0408868	0.0241482	0.161534	0.12011
chr11	73386816	73386915	4825044	0	+	0.646465	(0.57,1]	chr11	450239	18	INTRON	INTRON	RELT	ENSG00000054967.13	ENST00000064780.7:ENST00000545687.5:ENST00000544075.5:ENST00000393580.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	21	2	2.13445	2.24928	2.36411	0.0408868	0.0241482	0.161534	0.12011
chr17	66399114	66399214	6663263	0	+	0.6	(0.57,1]	chr17	650326	349	INTRON	INTRON	PRKCA	ENSG00000154229.12	ENST00000413366.8:ENST00000578063.5:ENST00000284384.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	21	2	2.13445	2.24928	2.36411	0.0408868	0.0241482	0.161534	0.12011
chr7	45110544	45110644	3528949	0	-	0.59	(0.57,1]	chr7	329196	4	SS5_PROX	SS5_PROX:INTRON	TBRG4	ENSG00000136270.14	ENST00000395655.8:ENST00000361278.7:ENST00000258770.8:ENST00000494076.5:ENST00000478532.5:ENST00000461363.1:ENST00000471142.5:ENST00000475893.1:ENST00000482285.1:ENST00000495078.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	21	2	2.13445	2.24928	2.36411	0.0408868	0.0241482	0.161534	0.12011
chr9	92636803	92636902	4287908	0	-	0.626263	(0.57,1]	chr9	394408	11	INTRON	INTRON	IPPK	ENSG00000127080.10	ENST00000287996.8:ENST00000375522.1	protein_coding	protein_coding	protein_coding	protein_coding	3	21	2	2.13445	2.24928	2.36411	0.0408868	0.0241482	0.161534	0.12011
chr12	56129887	56129984	5145825	0	+	0.494845	(0.476,0.515]	chr12	486224	8	INTRON	INTRON	ESYT1	ENSG00000139641.13	ENST00000551790.5:ENST00000394048.10:ENST00000267113.4	protein_coding	protein_coding	protein_coding	protein_coding	3	38	2	1.92984	2.24926	2.56868	0.0466474	0.0256676	0.151522	0.133676
chr3	185630331	185630429	1585737	0	+	0.489796	(0.476,0.515]	chr3	164216	6	UTR3	UTR3:EXON_MRNA	SENP2	ENSG00000163904.13	ENST00000296257.10:ENST00000413407.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	38	2	1.92984	2.24926	2.56868	0.0466474	0.0256676	0.151522	0.133676
chr5	1612714	1612814	2566087	0	-	0.49	(0.476,0.515]	chr5	245807	96	INTRON	INTRON	PDCD6P1	ENSG00000188002.11	ENST00000507841.5:ENST00000512335.5:ENST00000692393.1:ENST00000507290.5:ENST00000690809.1:ENST00000688433.1:ENST00000507505.5:ENST00000691115.1:ENST00000502273.7:ENST00000522848.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	3	38	2	1.92984	2.24926	2.56868	0.0466474	0.0256676	0.151522	0.133676
chr8	105334824	105334924	3837403	0	+	0.43	(0.408,0.44]	chr8	354033	147	INTRON	INTRON	ZFPM2	ENSG00000169946.14	ENST00000518180.1:ENST00000407775.7:ENST00000520492.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	70	2	2.04842	2.249225	2.45003	0.00990006	0.00797555	0.0838372	0.0798772
chr1	86979638	86979738	154245	0	+	0.44	(0.408,0.44]	chr1	16969	42	INTRON	INTRON	HS2ST1	ENSG00000153936.18	ENST00000370550.10:ENST00000370551.8:ENST00000687893.1:ENST00000693745.1:ENST00000689904.1:ENST00000690674.1:ENST00000591456.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	81	2	1.40381	2.249205	3.0946	0.0521927	7.51561e-4	0.177259	0.0251179
chr13	79370253	79370348	5626045	0	-	0.4	(0.378,0.408]	chr13	536644	9	INTRON	INTRON	RBM26	ENSG00000139746.16	ENST00000438737.3:ENST00000438724.5:ENST00000622611.4:ENST00000267229.11	protein_coding	protein_coding	protein_coding	protein_coding	4	53	2	2.23831	2.2492	2.26009	0.0188651	0.0179575	0.114265	0.108861
chr1	20661250	20661325	389379	0	-	0.653333	(0.57,1]	chr1	46508	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	DDOST	ENSG00000244038.11	ENST00000415136.6:ENST00000602624.7:ENST00000464364.1:ENST00000477229.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	28	2	1.71424	2.249165	2.78409	0.0279017	0.0116033	0.137011	0.0889104
chr16	88659628	88659728	6539289	0	-	0.63	(0.57,1]	chr16	633745	3	SS3_PROX	SS3_PROX:INTRON	MVD	ENSG00000167508.12	ENST00000301012.8:ENST00000569177.5:ENST00000567064.5:ENST00000568133.5:ENST00000563785.5:ENST00000568709.5:ENST00000563170.5:ENST00000562651.5:ENST00000565610.5:ENST00000563463.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	28	2	1.71424	2.249165	2.78409	0.0279017	0.0116033	0.137011	0.0889104
chr7	882854	882952	3269172	0	+	0.642857	(0.57,1]	chr7	303674	42	INTRON	INTRON	SUN1:GET4	ENSG00000164828.18:ENSG00000239857.7	ENST00000457861.1:ENST00000265857.8:ENST00000412734.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	28	2	1.71424	2.249165	2.78409	0.0279017	0.0116033	0.137011	0.0889104
chr3	152327418	152327518	1535573	0	+	0.52	(0.515,0.57]	chr3	159996	251	INTRON	INTRON	MBNL1	ENSG00000152601.18	ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000495875.6:ENST00000324210.10:ENST00000493459.5:ENST00000459747.1:ENST00000460591.5:ENST00000545754.5:ENST00000357472.7:ENST00000324196.9:ENST00000498502.5:ENST00000463374.5:ENST00000485910.5:ENST00000465907.6:ENST00000492948.5:ENST00000485509.5:ENST00000464596.5	protein_coding	protein_coding	protein_coding	protein_coding	8	83	2	2.01978	2.2491649999999996	2.47855	0.0165522	5.02001e-4	0.102621	0.020217099999999998
chr12	100270583	100270683	5200547	0	+	0.28	[0,0.28]	chr12	492117	24	INTRON	INTRON	SCYL2	ENSG00000136021.19	ENST00000549687.5:ENST00000360820.7:ENST00000548392.5:ENST00000635101.1:ENST00000550067.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	55	2	2.20927	2.24906	2.28885	0.0794763	0.0181093	0.19979	0.114853
chr11	65200585	65200685	4804578	0	+	0.55	(0.515,0.57]	chr11	446277	115	INTRON	INTRON	CAPN1	ENSG00000014216.16	ENST00000533820.5:ENST00000533129.5:ENST00000524773.5:ENST00000279247.11:ENST00000527323.5:ENST00000533079.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	40	2	2.06206	2.2489749999999997	2.43589	0.0370871	0.0135396	0.139194	0.101363
chr20	3901347	3901447	7227015	0	+	0.27	[0,0.28]	chr20	734478	4	SS3_PROX	SS3_PROX:INTRON	PANK2	ENSG00000125779.24	ENST00000497424.5:ENST00000316562.9:ENST00000495692.5:ENST00000610179.7:ENST00000643504.2:ENST00000336066.8:ENST00000646394.1:ENST00000621507.1:ENST00000471830.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	76	2	1.80873	2.248955	2.68918	0.0275571	0.0234525	0.128429	0.123904
chr1	27328744	27328842	53845	0	+	0.5	(0.476,0.515]	chr1	6886	31	INTRON	INTRON	TMEM222	ENSG00000186501.15	ENST00000611517.4:ENST00000374076.9:ENST00000464720.5:ENST00000608611.5:ENST00000486082.5:ENST00000466759.5:ENST00000464813.5:ENST00000478104.5:ENST00000498220.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	61	2	1.91525	2.2488900000000003	2.58253	0.0232571	0.00600101	0.127416	0.0674604
chr14	102602621	102602721	5822633	0	+	0.5	(0.476,0.515]	chr14	552490	89	INTRON	INTRON	RCOR1	ENSG00000089902.10	ENST00000262241.7	protein_coding	protein_coding	protein_coding	protein_coding	5	61	2	1.91525	2.2488900000000003	2.58253	0.0232571	0.00600101	0.127416	0.0674604
chr7	129051067	129051166	3636543	0	-	0.333333	(0.32,0.35]	chr7	338148	90	INTRON	INTRON	TNPO3	ENSG00000064419.14	ENST00000627585.2:ENST00000265388.10:ENST00000471234.5:ENST00000482320.5:ENST00000471166.1	protein_coding	protein_coding	protein_coding	protein_coding	11	152	2	2.2005	2.248795	2.29709	0.00388192	0.00110289	0.0544134	0.0303851
chr14	101869748	101869848	5819593	0	+	0.52	(0.515,0.57]	chr14	551879	125	INTRON	INTRON	PPP2R5C	ENSG00000078304.20	ENST00000694906.1:ENST00000422945.6:ENST00000328724.9:ENST00000350249.7:ENST00000557621.5:ENST00000556307.5:ENST00000553730.5:ENST00000334743.9:ENST00000445439.7:ENST00000557095.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	114	2	1.74724	2.248735	2.75023	0.00718687	2.30309e-4	0.0726297	0.0133889
chr7	119717155	119717255	3628509	0	-	0.24	[0,0.28]	chr7	337319	118	INTRON	INTRON	LINC02476	ENSG00000225546.6	ENST00000660268.1:ENST00000431071.5	lncRNA	lncRNA	lncRNA	lncRNA	8	138	2	1.9362	2.248615	2.56103	0.0103279	0.00418024	0.0894692	0.0571505
chr6	15423146	15423246	2824720	0	+	0.46	(0.44,0.476]	chr6	265204	124	INTRON	INTRON	JARID2	ENSG00000008083.14	ENST00000341776.7:ENST00000397311.4	protein_coding	protein_coding	protein_coding	protein_coding	5	61	2	1.98146	2.2485	2.51554	0.0186013	0.00777207	0.117264	0.0757731
chr4	60752	60852	1905364	0	+	0.23	[0,0.28]	chr4	191003	2	INTRON	INTRON	ZNF595	ENSG00000272602.6	ENST00000608255.2:ENST00000609518.5:ENST00000509152.3:ENST00000610261.6	protein_coding	protein_coding	protein_coding	protein_coding	15	246	2	1.87679	2.248495	2.6202	0.00405451	0.00107325	0.0578376	0.0301344
chr15	52568469	52568560	6177312	0	-	0.373626	(0.35,0.378]	chr15	588901	3	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	ARPP19	ENSG00000128989.11	ENST00000566423.5:ENST00000249822.9:ENST00000561650.5:ENST00000563277.5:ENST00000567669.5:ENST00000569723.5:ENST00000569281.6:ENST00000564163.5:ENST00000563566.5:ENST00000561971.1:ENST00000567830.1	protein_coding	protein_coding	protein_coding	protein_coding	6	76	2	1.90041	2.248485	2.59656	0.0145936	0.00638551	0.105992	0.0693551
chr6	31746331	31746423	2843550	0	+	0.597826	(0.57,1]	chr6	267796	1	INTRON	INTRON	MSH5:MSH5-SAPCD1	ENSG00000204410.16:ENSG00000255152.8	ENST00000375755.8:ENST00000375750.9:ENST00000650702.1:ENST00000493662.6:ENST00000375703.7:ENST00000375740.7:ENST00000423982.6:ENST00000463144.5:ENST00000450148.5:ENST00000497269.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	32	2	1.98953	2.248475	2.50742	0.0182848	0.00631173	0.115629	0.0687526
chr11	749671	749771	4720355	0	+	0.4	(0.378,0.408]	chr11	436387	17	INTRON	INTRON	TALDO1	ENSG00000177156.11	ENST00000528070.5:ENST00000532685.1:ENST00000528097.5:ENST00000530440.1:ENST00000319006.8:ENST00000530119.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	131	2	1.79934	2.24845	2.69756	0.00905855	3.80456e-4	0.0806974	0.0176313
chr1	26711025	26711125	51321	0	+	0.43	(0.408,0.44]	chr1	6542	131	INTRON	INTRON	ARID1A	ENSG00000117713.21	ENST00000430799.7:ENST00000324856.13:ENST00000637465.1:ENST00000457599.6	protein_coding	protein_coding	protein_coding	protein_coding	6	74	2	1.92319	2.2484200000000003	2.57365	0.0247322	0.00172241	0.12011	0.0383099
chrX	121192040	121192140	7715110	0	+	0.48	(0.476,0.515]	chrX	789390	58	INTRON	INTRON	ENSG00000286163	ENSG00000286163.1	ENST00000651788.1	lncRNA	lncRNA	lncRNA	lncRNA	7	79	2	2.1318	2.2484	2.365	0.0128901	0.00333541	0.0926667	0.0528877
chr18	36151859	36151959	6891655	0	+	0.46	(0.44,0.476]	chr18	683023	51	INTRON	INTRON	ELP2	ENSG00000134759.14	ENST00000351393.10:ENST00000442325.6:ENST00000358232.11:ENST00000423854.6:ENST00000539560.5:ENST00000350494.10:ENST00000542824.5:ENST00000540799.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	45	2	1.69402	2.248385	2.80275	0.0456129	0.0146513	0.164236	0.0982604
chr6	167926578	167926677	3035362	0	+	0.474747	(0.44,0.476]	chr6	282838	11	INTRON	INTRON	AFDN	ENSG00000130396.21	ENST00000683244.1:ENST00000351017.9:ENST00000344191.8:ENST00000392112.5:ENST00000392108.7:ENST00000400822.7:ENST00000447894.6:ENST00000366809.6:ENST00000366806.6:ENST00000511637.5:ENST00000485634.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	45	2	1.69402	2.248385	2.80275	0.0456129	0.0146513	0.164236	0.0982604
chr7	100115618	100115712	3585497	0	-	0.457447	(0.44,0.476]	chr7	334219	7	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SS5_ADJ:SS3_PROX:SS5_PROX:INTRON	TAF6:ENSG00000242798	ENSG00000106290.16:ENSG00000242798.1	ENST00000692927.1:ENST00000691370.1:ENST00000452438.7:ENST00000688343.1:ENST00000691010.1:ENST00000684938.1:ENST00000685280.1:ENST00000686172.1:ENST00000690602.1:ENST00000688640.1:ENST00000693225.1:ENST00000691681.1:ENST00000687969.1:ENST00000684951.1:ENST00000692466.1:ENST00000687410.1:ENST00000687151.1:ENST00000685713.1:ENST00000690291.1:ENST00000692175.1:ENST00000686141.1:ENST00000688091.1:ENST00000460673.3:ENST00000686777.1:ENST00000687672.1:ENST00000689866.1:ENST00000689754.1:ENST00000687447.1:ENST00000692408.1:ENST00000690206.1:ENST00000688086.1:ENST00000690367.1:ENST00000688962.1:ENST00000687216.1:ENST00000691413.1:ENST00000686580.1:ENST00000686096.1:ENST00000689284.1:ENST00000689684.1:ENST00000688498.1:ENST00000421980.5:ENST00000453269.7:ENST00000452041.5:ENST00000344095.8:ENST00000493322.6:ENST00000523306.6:ENST00000687768.1:ENST00000685258.1:ENST00000690962.1:ENST00000689536.1:ENST00000440225.6:ENST00000691534.1:ENST00000451699.6:ENST00000692029.1:ENST00000487288.2:ENST00000689347.1:ENST00000685054.1:ENST00000437822.6:ENST00000687641.1:ENST00000449571.5:ENST00000417349.5:ENST00000520135.6:ENST00000431404.2:ENST00000494221.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA:processed_transcript	4	45	2	1.69402	2.248385	2.80275	0.0456129	0.0146513	0.164236	0.0982604
chr9	136911187	136911286	4222441	0	+	0.444444	(0.44,0.476]	chr9	387832	8	INTRON	INTRON	TRAF2	ENSG00000127191.18	ENST00000247668.7:ENST00000482854.5:ENST00000469701.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	45	2	1.69402	2.248385	2.80275	0.0456129	0.0146513	0.164236	0.0982604
chr2	69939672	69939771	805759	0	+	0.363636	(0.35,0.378]	chr2	89939	15	UTR3	UTR3:EXON_MRNA:INTRON	MXD1	ENSG00000059728.11	ENST00000540449.5:ENST00000264444.7:ENST00000465446.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	100	2	1.76511	2.2483750000000002	2.73164	0.00867122	0.00387645	0.0842798	0.0543578
chr9	130875052	130875152	4215480	0	+	0.46	(0.44,0.476]	chr9	386464	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000318560.6	protein_coding	protein_coding	protein_coding	protein_coding	5	61	2	1.94723	2.248335	2.54944	0.0227424	0.00591346	0.117618	0.0694038
chr3	152313136	152313235	1535430	0	+	0.474747	(0.44,0.476]	chr3	159996	108	INTRON	INTRON	MBNL1	ENSG00000152601.18	ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000495875.6:ENST00000324210.10:ENST00000493459.5:ENST00000459747.1:ENST00000460591.5:ENST00000545754.5:ENST00000357472.7:ENST00000324196.9:ENST00000498502.5:ENST00000463374.5:ENST00000485910.5:ENST00000465907.6:ENST00000492948.5:ENST00000485509.5:ENST00000464596.5	protein_coding	protein_coding	protein_coding	protein_coding	12	139	2	1.88371	2.248135	2.61256	0.00600541	2.78737e-4	0.0674604	0.0148795
chr3	14488756	14488855	1370281	0	+	0.40404	(0.378,0.408]	chr3	144406	39	UTR3	UTR3:EXON_MRNA	SLC6A6	ENSG00000131389.18	ENST00000613060.4:ENST00000618278.4:ENST00000649500.1:ENST00000622186.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	140	2	1.72906	2.2481150000000003	2.76717	0.00969667	2.59679e-4	0.0829274	0.014326
chr10	63464294	63464394	4635375	0	-	0.32	(0.28,0.32]	chr10	426236	835	INTRON	INTRON	JMJD1C	ENSG00000171988.20	ENST00000399262.7:ENST00000633035.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	90	2	1.40698	2.24804	3.0891	0.0778529	7.51507e-4	0.196685	0.0251578
chr13	28284336	28284435	5462307	0	+	0.30303	(0.28,0.32]	chr13	523331	26	INTRON	INTRON	PAN3	ENSG00000152520.14	ENST00000380958.8:ENST00000399613.1	protein_coding	protein_coding	protein_coding	protein_coding	6	90	2	1.40698	2.24804	3.0891	0.0778529	7.51507e-4	0.196685	0.0251578
chr20	47508716	47508816	7281065	0	+	0.28	[0,0.28]	chr20	740469	63	INTRON	INTRON	NCOA3	ENSG00000124151.19	ENST00000371998.8:ENST00000372004.7:ENST00000371997.3	protein_coding	protein_coding	protein_coding	protein_coding	5	77	2	1.90035	2.247915	2.59548	0.0346067	0.0173564	0.136649	0.112318
chr6	34334564	34334664	3084192	0	-	0.48	(0.476,0.515]	chr6	288627	385	INTRON	INTRON	NUDT3:RPS10-NUDT3	ENSG00000272325.2:ENSG00000270800.3	ENST00000607016.2:ENST00000639725.1:ENST00000639877.1:ENST00000605528.2	protein_coding	protein_coding	protein_coding	protein_coding	6	70	2	1.86182	2.24789	2.63396	0.0178986	0.00426634	0.106365	0.0596808
chr17	28636864	28636964	6745070	0	-	0.42	(0.408,0.44]	chr17	662634	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	KIAA0100	ENSG00000007202.15	ENST00000528896.7:ENST00000544884.5:ENST00000389003.7	protein_coding	protein_coding	protein_coding	protein_coding	6	58	2	1.54273	2.247845	2.95296	0.0337312	0.00929354	0.146709	0.0817766
chr5	54150781	54150881	2619317	0	-	0.26	[0,0.28]	chr5	248848	370	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2:ENST00000505630.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	74	2	1.89998	2.24784	2.5957	0.0599553	0.00656974	0.169548	0.0736092
chr18	2693631	2693729	6865249	0	+	0.520408	(0.515,0.57]	chr18	679980	25	INTRON	INTRON	SMCHD1	ENSG00000101596.17	ENST00000320876.11:ENST00000688342.1:ENST00000684915.1:ENST00000581226.1:ENST00000693213.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	15	141	2	2.03373	2.2477349999999996	2.46174	8.8343e-4	6.79105e-4	0.0271255	0.0238419
chr15	73579266	73579366	6220633	0	-	0.34	(0.32,0.35]	chr15	593894	51	INTRON	INTRON	NPTN	ENSG00000156642.17	ENST00000351217.10:ENST00000345330.9:ENST00000565325.5:ENST00000562924.5:ENST00000563691.5:ENST00000565282.5:ENST00000564551.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	59	2	2.09005	2.247675	2.4053	0.0330483	0.0108284	0.133816	0.0920575
chr7	65891442	65891542	3323059	0	+	0.33	(0.32,0.35]	chr7	309012	175	INTRON	INTRON	VKORC1L1	ENSG00000196715.7	ENST00000360768.5:ENST00000648187.1:ENST00000648179.1:ENST00000434382.2	protein_coding	protein_coding	protein_coding	protein_coding	4	59	2	2.09005	2.247675	2.4053	0.0330483	0.0108284	0.133816	0.0920575
chr12	57415462	57415561	5339103	0	-	0.383838	(0.378,0.408]	chr12	510716	193	INTRON	INTRON	R3HDM2	ENSG00000179912.21	ENST00000402412.6:ENST00000347140.7:ENST00000634871.1:ENST00000448732.1	protein_coding	protein_coding	protein_coding	protein_coding	3	40	2	1.94681	2.24765	2.54849	0.0457723	0.0273196	0.149888	0.136494
chr15	101294547	101294647	6270044	0	-	0.4	(0.378,0.408]	chr15	598035	3	SS5_PROX	SS5_PROX:INTRON	SNRPA1	ENSG00000131876.18	ENST00000254193.11:ENST00000558036.5:ENST00000559309.5:ENST00000394082.8:ENST00000540017.6:ENST00000560496.5:ENST00000560383.5:ENST00000558059.5:ENST00000560987.5:ENST00000560856.5:ENST00000558020.1:ENST00000561187.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	40	2	1.94681	2.24765	2.54849	0.0457723	0.0273196	0.149888	0.136494
chr1	55207497	55207597	465826	0	-	0.22	[0,0.28]	chr1	56290	290	INTRON	INTRON	USP24	ENSG00000162402.14	ENST00000294383.7	protein_coding	protein_coding	protein_coding	protein_coding	4	74	2	2.20642	2.247635	2.28885	0.0280845	0.0181093	0.125065	0.114853
chr3	37282967	37283065	1396154	0	+	0.244898	[0,0.28]	chr3	146339	3	INTRON	INTRON	GOLGA4	ENSG00000144674.17	ENST00000435830.6:ENST00000444882.5:ENST00000356847.8:ENST00000450863.6:ENST00000361924.7:ENST00000429018.5:ENST00000419177.3:ENST00000437131.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	74	2	2.20642	2.247635	2.28885	0.0280845	0.0181093	0.125065	0.114853
chr6	163570809	163570909	3033283	0	+	0.4	(0.378,0.408]	chr6	282617	2	UTR3	UTR3:EXON_MRNA	QKI	ENSG00000112531.17	ENST00000361758.8:ENST00000361752.8:ENST00000537883.5:ENST00000541696.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	18	218	2	2.16307	2.24763	2.33219	0.00109568	2.55119e-4	0.0304174	0.0142249
chr2	65398515	65398615	1143856	0	-	0.37	(0.35,0.378]	chr2	122242	209	INTRON	INTRON	SPRED2	ENSG00000198369.10	ENST00000356388.9:ENST00000440972.1	protein_coding	protein_coding	protein_coding	protein_coding	3	41	2	2.17079	2.24761	2.32443	0.0544216	0.0225978	0.164972	0.124921
chr3	149069026	149069122	1840819	0	-	0.375	(0.35,0.378]	chr3	185169	3	INTRON	INTRON	HLTF	ENSG00000071794.16	ENST00000310053.10:ENST00000465259.5:ENST00000392912.6:ENST00000494055.5	protein_coding	protein_coding	protein_coding	protein_coding	3	41	2	2.17079	2.24761	2.32443	0.0544216	0.0225978	0.164972	0.124921
chr7	139063693	139063790	3655952	0	-	0.360825	(0.35,0.378]	chr7	339409	22	INTRON	INTRON	ZC3HAV1	ENSG00000105939.14	ENST00000242351.10:ENST00000464606.5:ENST00000680309.1:ENST00000471652.1:ENST00000460845.5	protein_coding	protein_coding	protein_coding	protein_coding	3	41	2	2.17079	2.24761	2.32443	0.0544216	0.0225978	0.164972	0.124921
chr17	82817229	82817329	6694866	0	+	0.45	(0.44,0.476]	chr17	654903	19	INTRON	INTRON	TBCD	ENSG00000141556.22	ENST00000682479.1:ENST00000682722.1:ENST00000684464.1:ENST00000684544.1:ENST00000681983.1:ENST00000684361.1:ENST00000683184.1:ENST00000683282.1:ENST00000684408.1:ENST00000355528.9:ENST00000683444.1:ENST00000684776.1:ENST00000683041.1:ENST00000684760.1:ENST00000684349.1:ENST00000682213.1:ENST00000683009.1:ENST00000682921.1:ENST00000539345.6:ENST00000684000.1:ENST00000684188.1:ENST00000684429.1:ENST00000682610.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	109	2	1.84951	2.24754	2.64557	0.00567535	0.00158432	0.0678837	0.0363089
chr9	131181392	131181492	4216203	0	+	0.46	(0.44,0.476]	chr9	386630	26	INTRON	INTRON	NUP214	ENSG00000126883.19	ENST00000695497.1:ENST00000695498.1:ENST00000695496.1:ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000525980.5:ENST00000526346.5:ENST00000531929.5:ENST00000651334.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	129	2	2.20903	2.24754	2.28605	0.00206758	0.00143587	0.0411504	0.0347139
chr8	140751007	140751106	4077540	0	-	0.515152	(0.476,0.515]	chr8	370419	2	INTRON	INTRON	PTK2	ENSG00000169398.20	ENST00000696786.1:ENST00000522684.5:ENST00000395218.3:ENST00000519654.5:ENST00000521059.5:ENST00000517887.5:ENST00000519465.5:ENST00000519993.5:ENST00000340930.7:ENST00000523539.5:ENST00000519419.5:ENST00000524202.5:ENST00000521986.5:ENST00000521250.5:ENST00000521981.5:ENST00000521029.5:ENST00000520151.5:ENST00000523670.5:ENST00000519024.5:ENST00000523746.5:ENST00000523474.5:ENST00000519899.5:ENST00000519361.5:ENST00000520843.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	84	2	2.12058	2.2475300000000002	2.37448	0.00686728	0.00419067	0.071646	0.0591344
chr3	48924617	48924715	1421507	0	+	0.377551	(0.35,0.378]	chr3	149469	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	ARIH2	ENSG00000177479.20	ENST00000478224.5:ENST00000430423.5:ENST00000452882.5:ENST00000498314.5:ENST00000474618.5:ENST00000492077.5:ENST00000449376.5:ENST00000490095.5:ENST00000463738.5:ENST00000356401.9:ENST00000495761.5:ENST00000483333.5:ENST00000482427.5:ENST00000488963.5:ENST00000420814.5:ENST00000486316.5:ENST00000449729.5:ENST00000433170.5:ENST00000474936.6:ENST00000466850.1:ENST00000484999.5:ENST00000470296.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	50	2	2.02424	2.247445	2.47065	0.0386172	0.0164934	0.142656	0.110301
chr7	151095134	151095234	3448438	0	+	0.35	(0.32,0.35]	chr7	322165	42	INTRON	INTRON	AGAP3	ENSG00000133612.19	ENST00000490097.5:ENST00000463381.5:ENST00000397238.7:ENST00000622464.4:ENST00000479901.5:ENST00000473312.5:ENST00000469901.5:ENST00000476375.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	137	2	1.87217	2.24743	2.62269	0.0100815	6.6835e-4	0.0850389	0.0234462
chr16	4449741	4449835	6282809	0	+	0.425532	(0.408,0.44]	chr16	601438	3	EXON_MRNA	EXON_MRNA:INTRON	DNAJA3	ENSG00000103423.14	ENST00000431375.6:ENST00000355296.8:ENST00000576911.5:ENST00000262375.11:ENST00000576180.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	39	2	2.00228	2.2474299999999996	2.49258	0.0389732	0.0314608	0.144381	0.143072
chr3	11810897	11810991	1615719	0	-	0.43617	(0.408,0.44]	chr3	166771	1	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	TAMM41	ENSG00000144559.11	ENST00000273037.9:ENST00000455809.6:ENST00000457498.5:ENST00000486090.1:ENST00000414736.1:ENST00000444133.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	39	2	2.00228	2.2474299999999996	2.49258	0.0389732	0.0314608	0.144381	0.143072
chr3	136188699	136188799	1824163	0	-	0.44	(0.408,0.44]	chr3	183518	356	INTRON	INTRON	MSL2	ENSG00000174579.4	ENST00000309993.3:ENST00000434835.2:ENST00000481989.1:ENST00000491050.1:ENST00000473093.1	protein_coding	protein_coding	protein_coding	protein_coding	3	39	2	2.00228	2.2474299999999996	2.49258	0.0389732	0.0314608	0.144381	0.143072
chr19	18280044	18280143	7151956	0	-	0.525253	(0.515,0.57]	chr19	722750	1	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	JUND	ENSG00000130522.6	ENST00000252818.5:ENST00000600972.1	protein_coding	protein_coding	protein_coding	protein_coding	47	462	2	2.00694	2.247375	2.48781	1.48153e-4	1.08752e-5	0.0105822	0.00260682
chrX	123658153	123658253	7878296	0	-	0.38	(0.378,0.408]	chrX	802527	124	INTRON	INTRON	THOC2	ENSG00000125676.20	ENST00000245838.13:ENST00000355725.8:ENST00000491737.5	protein_coding	protein_coding	protein_coding	protein_coding	4	49	2	2.18512	2.2473650000000003	2.30961	0.055088	0.00902136	0.165463	0.0851259
chr15	43406006	43406105	6160939	0	-	0.313131	(0.28,0.32]	chr15	586641	31	UTR3	UTR3:EXON_MRNA	TP53BP1	ENSG00000067369.14	ENST00000382044.9	protein_coding	protein_coding	protein_coding	protein_coding	4	57	2	1.76378	2.247275	2.73077	0.0395495	0.0220748	0.161534	0.115395
chr15	84569204	84569304	6251361	0	-	0.29	(0.28,0.32]	chr15	596599	3	SS5_PROX	SS5_PROX:INTRON	UBE2Q2P1	ENSG00000189136.9	ENST00000354771.8:ENST00000339094.5:ENST00000561403.6:ENST00000558251.5:ENST00000559871.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	4	57	2	1.76378	2.247275	2.73077	0.0395495	0.0220748	0.161534	0.115395
chr6	20431422	20431522	2827743	0	+	0.53	(0.515,0.57]	chr6	265575	272	INTRON	INTRON	E2F3	ENSG00000112242.16	ENST00000346618.8:ENST00000535432.2	protein_coding	protein_coding	protein_coding	protein_coding	13	114	2	1.63264	2.24724	2.86184	0.00818008	3.55958e-4	0.0768236	0.0168968
chr16	20741208	20741308	6459078	0	-	0.47	(0.44,0.476]	chr16	623049	3	SS5_PROX	SS5_PROX:INTRON	THUMPD1	ENSG00000066654.14	ENST00000636554.1:ENST00000381337.6:ENST00000396083.7:ENST00000565248.1:ENST00000569768.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	142	2	2.20903	2.247225	2.28542	0.00143587	0.00133152	0.0347139	0.033444
chr1	77673388	77673488	493371	0	-	0.51	(0.476,0.515]	chr1	58315	314	INTRON	INTRON	ZZZ3	ENSG00000036549.13	ENST00000370801.8:ENST00000370798.5:ENST00000433749.5:ENST00000414381.5:ENST00000463166.5:ENST00000469944.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	83	2	2.21313	2.247125	2.28112	0.00700958	0.00401502	0.0718189	0.0578059
chr7	152359574	152359674	3680529	0	-	0.41	(0.408,0.44]	chr7	341660	5	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000682301.1:ENST00000452749.2:ENST00000680867.1:ENST00000683800.1:ENST00000684278.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	68	2	1.24904	2.24707	3.2451	0.055886	0.00337792	0.18407	0.0516884
chr16	85573446	85573546	6415566	0	+	0.42	(0.408,0.44]	chr16	615470	167	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	12	147	2	2.20396	2.24704	2.29012	0.00235889	9.26918e-4	0.0445848	0.0278822
chr3	123950912	123951010	1804067	0	-	0.265306	[0,0.28]	chr3	181264	14	INTRON	INTRON	CCDC14	ENSG00000175455.16	ENST00000463996.1:ENST00000409697.8:ENST00000488653.6:ENST00000485727.5:ENST00000495381.5:ENST00000409657.5:ENST00000489746.5:ENST00000433542.7:ENST00000310351.8:ENST00000483247.1:ENST00000435910.5:ENST00000477268.5:ENST00000438440.2:ENST00000417438.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	54	2	1.8986	2.24704	2.59548	0.0531512	0.0346067	0.179787	0.136649
chr3	31633284	31633384	1392418	0	+	0.46	(0.44,0.476]	chr3	145771	1	SS5_PROX	SS5_PROX:INTRON	STT3B	ENSG00000163527.10	ENST00000295770.4:ENST00000463044.1:ENST00000488151.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	46	2	2.03266	2.2470049999999997	2.46135	0.0374637	0.0155853	0.140008	0.109411
chr8	123074326	123074425	3850242	0	+	0.444444	(0.44,0.476]	chr8	354655	5	INTRON	INTRON	TBC1D31	ENSG00000156787.17	ENST00000520368.5:ENST00000519418.5:ENST00000287380.6:ENST00000522420.5:ENST00000327098.9:ENST00000518099.5:ENST00000521676.5:ENST00000524307.5:ENST00000522276.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	46	2	2.03266	2.2470049999999997	2.46135	0.0374637	0.0155853	0.140008	0.109411
chr3	43703582	43703682	1410306	0	+	0.29	(0.28,0.32]	chr3	147937	6	INTRON	INTRON	ABHD5	ENSG00000011198.10	ENST00000643520.1:ENST00000458276.7:ENST00000649763.1:ENST00000643140.1:ENST00000643500.1:ENST00000644371.2:ENST00000013894.3:ENST00000646378.1:ENST00000643477.1:ENST00000646799.1:ENST00000454293.2:ENST00000642351.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	12	167	2	2.15823	2.2469799999999998	2.33573	0.00764237	0.00100143	0.0752681	0.029157
chr15	89316393	89316482	6256961	0	-	0.41573	(0.408,0.44]	chr15	596918	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	POLG	ENSG00000140521.17	ENST00000635831.1:ENST00000631044.2:ENST00000442287.6:ENST00000268124.11:ENST00000672695.1:ENST00000530292.3:ENST00000637264.1:ENST00000635986.2:ENST00000672923.2:ENST00000666746.1:ENST00000672071.1:ENST00000637238.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	75	2	2.13157	2.246925	2.36228	0.0109031	0.00528443	0.0923273	0.0635846
chr6	28613724	28613824	3075334	0	-	0.29	(0.28,0.32]	chr6	285910	158	INTRON	INTRON	ZBED9	ENSG00000232040.4	ENST00000530247.1:ENST00000524745.2	protein_coding	processed_transcript	protein_coding	processed_transcript	12	140	2	1.57235	2.246885	2.92142	0.0124803	0.00234443	0.0974878	0.0434875
chr11	28171913	28172012	4752797	0	+	0.434343	(0.408,0.44]	chr11	440107	79	INTRON	INTRON	METTL15	ENSG00000169519.21	ENST00000406787.7:ENST00000451385.6:ENST00000407364.8:ENST00000532947.2:ENST00000634627.1:ENST00000634973.1:ENST00000303459.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	51	2	1.94273	2.24688	2.55103	0.0456237	0.00587353	0.149888	0.0690758
chr3	141895442	141895541	1526263	0	+	0.434343	(0.408,0.44]	chr3	159005	175	INTRON	INTRON	ATP1B3	ENSG00000069849.11	ENST00000475483.5:ENST00000465172.5:ENST00000286371.8:ENST00000466678.5:ENST00000462082.1:ENST00000495216.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	51	2	1.94273	2.24688	2.55103	0.0456237	0.00587353	0.149888	0.0690758
chr7	128605717	128605817	3408106	0	+	0.43	(0.408,0.44]	chr7	318364	133	INTRON	INTRON	ENSG00000280828:ENSG00000242588	ENSG00000280828.1:ENSG00000242588.6	ENST00000479267.2:ENST00000605862.5	lncRNA	lncRNA	lncRNA:unprocessed_pseudogene	lncRNA:unprocessed_pseudogene	4	51	2	1.94273	2.24688	2.55103	0.0456237	0.00587353	0.149888	0.0690758
chr17	39392072	39392172	6766557	0	-	0.53	(0.515,0.57]	chr17	665497	485	INTRON	INTRON	FBXL20	ENSG00000108306.13	ENST00000264658.11:ENST00000583610.5:ENST00000394294.7:ENST00000577399.5:ENST00000647139.1	protein_coding	protein_coding	protein_coding	protein_coding	5	52	2	2.00468	2.2468500000000002	2.48902	0.0166344	0.00760558	0.110511	0.0749571
chr1	19197569	19197669	386706	0	-	0.5	(0.476,0.515]	chr1	46115	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	UBR4	ENSG00000127481.15	ENST00000375254.8	protein_coding	protein_coding	protein_coding	protein_coding	3	38	2	2.23335	2.246845	2.26034	0.0634557	0.0166235	0.177047	0.110511
chr11	67133268	67133367	4812586	0	+	0.484848	(0.476,0.515]	chr11	448106	8	INTRON	INTRON	KDM2A	ENSG00000173120.15	ENST00000529006.7:ENST00000398645.6:ENST00000532436.5:ENST00000527157.1:ENST00000308783.9	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	38	2	2.23335	2.246845	2.26034	0.0634557	0.0166235	0.177047	0.110511
chr11	77759264	77759363	4995360	0	-	0.494949	(0.476,0.515]	chr11	472041	118	INTRON	INTRON	RSF1	ENSG00000048649.14	ENST00000308488.11:ENST00000528095.5:ENST00000534794.1:ENST00000440064.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	38	2	2.23335	2.246845	2.26034	0.0634557	0.0166235	0.177047	0.110511
chr17	78422299	78422396	6682744	0	+	0.484536	(0.476,0.515]	chr17	652841	5	INTRON	INTRON	PGS1	ENSG00000087157.19	ENST00000262764.11:ENST00000589425.5:ENST00000589426.5:ENST00000588169.5:ENST00000588281.5:ENST00000586880.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	38	2	2.23335	2.246845	2.26034	0.0634557	0.0166235	0.177047	0.110511
chr7	100308322	100308422	3586491	0	-	0.4	(0.378,0.408]	chr7	334330	72	INTRON	INTRON	PMS2P1	ENSG00000078319.11	ENST00000685724.1:ENST00000692351.1:ENST00000685541.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	12	148	2	2.2403	2.246845	2.25339	0.00170463	0.00125943	0.0373845	0.03295
chr1	246079652	246079752	676428	0	-	0.36	(0.35,0.378]	chr1	79717	262	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000391836.3:ENST00000464398.1:ENST00000453676.5:ENST00000462422.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	80	2	2.13524	2.24681	2.35838	0.0130865	0.00468156	0.0934394	0.0631419
chr9	136405702	136405753	4374383	0	-	0.490196	(0.476,0.515]	chr9	402860	1	SS5_PROX	SS5_PROX:INTRON	ENTR1	ENSG00000165689.17	ENST00000357365.8:ENST00000298537.11:ENST00000371725.7:ENST00000417512.1:ENST00000486441.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	105	2	1.73688	2.24679	2.7567	0.0252731	3.76694e-4	0.133676	0.017994
chr1	19911645	19911745	41040	0	+	0.39	(0.378,0.408]	chr1	4832	40	UTR3	UTR3:EXON_MRNA	OTUD3	ENSG00000169914.6	ENST00000375120.4	protein_coding	protein_coding	protein_coding	protein_coding	5	55	2	1.89052	2.24674	2.60296	0.0267851	0.0148147	0.123349	0.106702
chr2	177259211	177259310	1275792	0	-	0.535354	(0.515,0.57]	chr2	134708	246	INTRON	INTRON	NFE2L2	ENSG00000116044.16	ENST00000397063.8:ENST00000464747.5:ENST00000397062.8:ENST00000446151.6:ENST00000449627.1:ENST00000448782.5:ENST00000430047.1:ENST00000586532.5:ENST00000421929.5:ENST00000423513.5:ENST00000588123.1:ENST00000477534.1:ENST00000462023.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	14	139	2	2.20807	2.2466150000000003	2.28516	0.00102388	5.3489e-4	0.029231300000000002	0.0209127
chrX	154723114	154723214	7915040	0	-	0.49	(0.476,0.515]	chrX	806107	64	INTRON	INTRON	GAB3	ENSG00000160219.12	ENST00000496390.5:ENST00000424127.3:ENST00000369575.7:ENST00000369568.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	39	2	2.10874	2.24658	2.38442	0.0417472	0.0285608	0.161736	0.12666
chr5	292203	292303	2312826	0	+	0.34	(0.32,0.35]	chr5	223715	154	INTRON	INTRON	PDCD6	ENSG00000249915.9	ENST00000614778.4:ENST00000618970.4:ENST00000513582.5:ENST00000264933.9:ENST00000505221.5:ENST00000507528.5:ENST00000505526.1:ENST00000507473.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	46	2	2.09005	2.2465650000000004	2.40308	0.0417732	0.0330483	0.161736	0.133816
chr2	167853117	167853217	1258331	0	-	0.35	(0.32,0.35]	chr2	133322	375	INTRON	INTRON	B3GALT1-AS1	ENSG00000235335.3	ENST00000430546.2:ENST00000657553.1:ENST00000670221.1:ENST00000436982.2	lncRNA	lncRNA	lncRNA	lncRNA	5	71	2	2.22655	2.2464750000000002	2.2664	0.0199969	0.00823133	0.109608	0.0812969
chr21	6724392	6724482	7365210	0	+	0.411111	(0.408,0.44]	chr21	751695	1	EXON_LNCRNA	EXON_LNCRNA	ENSG00000280164	ENSG00000280164.1	ENST00000623892.1	lncRNA	lncRNA	lncRNA	lncRNA	3	38	2	1.74775	2.2464649999999997	2.74518	0.0735403	0.0152229	0.190238	0.108535
chr1	112621281	112621381	186343	0	+	0.45	(0.44,0.476]	chr1	20636	10	INTRON	INTRON	CAPZA1	ENSG00000116489.13	ENST00000485542.5:ENST00000476936.5:ENST00000263168.4:ENST00000498626.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	94	2	1.82106	2.246375	2.67169	0.0124107	0.00140924	0.0973643	0.0340865
chr13	95098074	95098174	5637820	0	-	0.41	(0.408,0.44]	chr13	537050	15	INTRON	INTRON	ABCC4	ENSG00000125257.16	ENST00000645237.2:ENST00000643051.1:ENST00000643842.1:ENST00000646439.1:ENST00000644880.1:ENST00000643816.1:ENST00000536256.3:ENST00000643556.1:ENST00000629385.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	46	2	1.53263	2.24635	2.96007	0.0733439	0.00753901	0.190051	0.0773151
chr16	1699682	1699779	6275429	0	+	0.43299	(0.408,0.44]	chr16	599536	8	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	JPT2	ENSG00000206053.13	ENST00000562684.5:ENST00000248098.8:ENST00000566742.5:ENST00000562569.1	protein_coding	protein_coding	protein_coding	protein_coding	4	46	2	1.53263	2.24635	2.96007	0.0733439	0.00753901	0.190051	0.0773151
chr7	16622188	16622287	3494791	0	-	0.353535	(0.35,0.378]	chr7	326324	59	INTRON	INTRON	ANKMY2	ENSG00000106524.9	ENST00000306999.7:ENST00000447802.3:ENST00000628652.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	49	2	1.76773	2.24635	2.72497	0.0373863	0.0198266	0.155878	0.109608
chr3	5191357	5191455	1354217	0	+	0.418367	(0.408,0.44]	chr3	142413	19	INTRON	INTRON	EDEM1	ENSG00000134109.11	ENST00000434243.5:ENST00000256497.9:ENST00000465369.5:ENST00000465187.1:ENST00000445686.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	111	2	1.33029	2.246305	3.16232	0.0469419	7.71549e-5	0.151917	0.00735438
chr5	77774804	77774904	2647219	0	-	0.37	(0.35,0.378]	chr5	251578	596	INTRON	INTRON	TBCA	ENSG00000171530.15	ENST00000380377.9:ENST00000306388.10:ENST00000520361.5:ENST00000651106.1:ENST00000518338.6:ENST00000522370.1:ENST00000520039.1	protein_coding	protein_coding	protein_coding	protein_coding	4	49	2	1.71046	2.24629	2.78212	0.0441269	0.0168532	0.162255	0.103549
chr5	160100555	160100655	2759611	0	-	0.37	(0.35,0.378]	chr5	260436	61	INTRON	INTRON	PWWP2A	ENSG00000170234.13	ENST00000456329.7:ENST00000523662.1:ENST00000307063.9:ENST00000520662.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	49	2	1.71046	2.24629	2.78212	0.0441269	0.0168532	0.162255	0.103549
chr7	152283711	152283810	3679759	0	-	0.343434	(0.32,0.35]	chr7	341617	95	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000684262.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	119	2	1.93022	2.24629	2.56236	0.00608869	0.002892	0.0705469	0.0476886
chr17	1455276	1455376	6699962	0	-	0.48	(0.476,0.515]	chr17	655571	178	INTRON	INTRON	CRK	ENSG00000167193.8	ENST00000398970.5:ENST00000300574.3:ENST00000574295.1:ENST00000572145.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	109	2	2.17892	2.246255	2.31359	0.0046578	0.00177302	0.0629753	0.0378427
chr18	21596752	21596852	6955076	0	-	0.44	(0.408,0.44]	chr18	688033	4	SS5_PROX	SS5_PROX:INTRON	ESCO1	ENSG00000141446.11	ENST00000269214.10:ENST00000383276.1:ENST00000580101.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	70	2	1.84301	2.246225	2.64944	0.0174311	0.00481947	0.112689	0.060277
chr1	55145199	55145298	465176	0	-	0.313131	(0.28,0.32]	chr1	56183	6	INTRON	INTRON	USP24	ENSG00000162402.14	ENST00000294383.7	protein_coding	protein_coding	protein_coding	protein_coding	6	90	2	2.23291	2.24615	2.25939	0.021772	0.00444008	0.11491	0.0610799
chr13	20027202	20027260	5453123	0	+	0.37931	(0.378,0.408]	chr13	522484	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ZMYM2	ENSG00000121741.17	ENST00000382874.6:ENST00000610343.5:ENST00000382871.3:ENST00000382883.7:ENST00000468677.5:ENST00000382870.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	40	2	2.13703	2.24615	2.35527	0.0797592	0.0121511	0.19979	0.0963966
chr19	3595360	3595455	7118044	0	-	0.494737	(0.476,0.515]	chr19	715813	4	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TBXA2R	ENSG00000006638.13	ENST00000375190.10:ENST00000589966.1:ENST00000411851.3	protein_coding	protein_coding	protein_coding	protein_coding	4	47	2	1.83961	2.2461450000000003	2.65268	0.0314489	0.0201975	0.13151	0.121243
chr7	101974000	101974100	3367934	0	+	0.48	(0.476,0.515]	chr7	315233	140	INTRON	INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000497815.5:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000558469.5:ENST00000560541.5:ENST00000558836.5:ENST00000606749.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	47	2	1.83961	2.2461450000000003	2.65268	0.0314489	0.0201975	0.13151	0.121243
chr21	10415111	10415211	7368145	0	+	0.55	(0.515,0.57]	chr21	751974	2	SS5_PROX	SS5_PROX:INTRON	BAGE2	ENSG00000187172.15	ENST00000474011.5:ENST00000470054.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	5	52	2	1.91916	2.24607	2.57298	0.0231902	0.00506495	0.118148	0.0646039
chr6	33310637	33310736	3082784	0	-	0.464646	(0.44,0.476]	chr6	288387	21	INTRON	INTRON	TAPBP	ENSG00000231925.13	ENST00000434618.7:ENST00000475304.5:ENST00000489157.5:ENST00000426633.6:ENST00000480730.5:ENST00000437116.2:ENST00000467025.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	45	2	1.81595	2.245835	2.67572	0.0317953	0.0212064	0.14477	0.113017
chr10	68760012	68760111	4442675	0	+	0.484848	(0.476,0.515]	chr10	409678	2	INTRON	INTRON	CCAR1	ENSG00000060339.14	ENST00000630771.2:ENST00000543719.5:ENST00000541012.5:ENST00000265872.11:ENST00000539539.5:ENST00000543229.5:ENST00000536012.5:ENST00000543225.5:ENST00000540210.5:ENST00000479143.2:ENST00000543706.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	124	2	2.00667	2.2458150000000003	2.48496	0.00273468	0.00143091	0.0483437	0.0340925
chr5	10381499	10381599	2317927	0	+	0.41	(0.408,0.44]	chr5	224625	3	SS3_PROX	SS3_PROX:INTRON	MARCHF6	ENSG00000145495.16	ENST00000274140.10:ENST00000449913.6:ENST00000502795.5:ENST00000511802.5:ENST00000503788.5:ENST00000640713.1:ENST00000510872.5:ENST00000507863.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	17	134	2	1.26631	2.245805	3.2253	0.0224009	4.07735e-4	0.124921	0.0185763
chr19	10971580	10971679	7015663	0	+	0.525253	(0.515,0.57]	chr19	697168	59	INTRON	INTRON	SMARCA4	ENSG00000127616.20	ENST00000644737.1:ENST00000642726.1:ENST00000646484.1:ENST00000643549.1:ENST00000643296.1:ENST00000647230.1:ENST00000642628.1:ENST00000646510.1:ENST00000429416.8:ENST00000644760.1:ENST00000344626.10:ENST00000646693.2:ENST00000645460.1:ENST00000541122.6:ENST00000589677.5:ENST00000444061.8:ENST00000590574.6	protein_coding	protein_coding	protein_coding	protein_coding	4	39	2	1.88259	2.24579	2.60899	0.0251849	0.0232669	0.133519	0.118148
chr7	130194115	130194214	3638640	0	-	0.545455	(0.515,0.57]	chr7	338395	9	INTRON	INTRON	TMEM209	ENSG00000146842.17	ENST00000397622.7:ENST00000473456.5:ENST00000462753.5	protein_coding	protein_coding	protein_coding	protein_coding	4	39	2	1.88259	2.24579	2.60899	0.0251849	0.0232669	0.133519	0.118148
chr21	6333203	6333303	7364907	0	+	0.3	(0.28,0.32]	chr21	751669	32	INTRON	INTRON	ENSG00000278903	ENSG00000278903.4	ENST00000688458.1:ENST00000689306.1:ENST00000624576.3:ENST00000623738.3:ENST00000692237.1:ENST00000624165.1	lncRNA	lncRNA	lncRNA	lncRNA	6	76	2	1.3645	2.24565	3.1268	0.0687143	0.00508956	0.184298	0.0646039
chr7	139046996	139047095	3655778	0	-	0.474747	(0.44,0.476]	chr7	339380	36	UTR3	UTR3:EXON_MRNA	ZC3HAV1	ENSG00000105939.14	ENST00000242351.10:ENST00000464606.5:ENST00000680309.1	protein_coding	protein_coding	protein_coding	protein_coding	4	45	2	1.62896	2.245635	2.86231	0.0546679	0.012214	0.182674	0.0910127
chr7	139391715	139391814	3437914	0	+	0.474747	(0.44,0.476]	chr7	320340	152	INTRON	INTRON	LUC7L2:FMC1-LUC7L2	ENSG00000146963.18:ENSG00000269955.2	ENST00000541170.7:ENST00000541515.3:ENST00000608368.5:ENST00000619796.4:ENST00000354926.9:ENST00000456182.5:ENST00000263545.7:ENST00000463912.5:ENST00000498518.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	45	2	1.62896	2.245635	2.86231	0.0546679	0.012214	0.182674	0.0910127
chr7	152413839	152413938	3681072	0	-	0.40404	(0.378,0.408]	chr7	341660	548	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000682301.1:ENST00000452749.2:ENST00000680867.1:ENST00000683800.1:ENST00000684278.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	14	170	2	2.0528	2.24546	2.43812	0.00419397	1.87445e-4	0.0572185	0.011951
chr17	30508979	30509079	6589382	0	+	0.56	(0.515,0.57]	chr17	640817	130	INTRON	INTRON	GOSR1	ENSG00000108587.16	ENST00000225724.9:ENST00000451249.7:ENST00000427274.6:ENST00000467337.6:ENST00000581721.5:ENST00000414833.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	91	2	2.09379	2.24544	2.39709	0.00680216	7.86638e-4	0.071184	0.0258324
chr10	42786370	42786469	4428057	0	+	0.373737	(0.35,0.378]	chr10	408077	3	INTRON	INTRON	BMS1	ENSG00000165733.8	ENST00000374518.6	protein_coding	protein_coding	protein_coding	protein_coding	3	43	2	2.09331	2.2453849999999997	2.39746	0.041314	0.0315717	0.161534	0.13151
chr2	113586678	113586776	854105	0	+	0.377551	(0.35,0.378]	chr2	95852	24	INTRON	INTRON	WASH2P	ENSG00000146556.15	ENST00000686495.1:ENST00000692602.1:ENST00000688542.1:ENST00000685302.1:ENST00000685435.1:ENST00000685518.1:ENST00000691953.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	3	43	2	2.09331	2.2453849999999997	2.39746	0.041314	0.0315717	0.161534	0.13151
chr5	131777436	131777536	2720549	0	-	0.42	(0.408,0.44]	chr5	255730	324	INTRON	INTRON	FNIP1	ENSG00000217128.13	ENST00000510461.6:ENST00000307954.12:ENST00000307968.11:ENST00000511848.1	protein_coding	protein_coding	protein_coding	protein_coding	5	61	2	2.22268	2.2453000000000003	2.26792	0.0179973	0.00770925	0.106756	0.0784002
chrX	45035681	45035779	7650235	0	+	0.377551	(0.35,0.378]	chrX	782764	3	INTRON	INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000675440.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000621147.5:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1:ENST00000675525.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	67	2	1.6122	2.2452750000000004	2.87835	0.0616849	0.00160563	0.174021	0.0367961
chr21	34108547	34108646	7401445	0	+	0.40404	(0.378,0.408]	chr21	753975	24	INTRON	INTRON	MRPS6	ENSG00000243927.6	ENST00000488492.5:ENST00000477091.5:ENST00000399312.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	68	2	1.76032	2.245175	2.73003	0.0721577	8.35208e-4	0.187433	0.0263691
chr16	31180727	31180824	6340558	0	+	0.71134	(0.57,1]	chr16	608317	1	INTRON	INTRON	FUS	ENSG00000089280.19	ENST00000566605.5:ENST00000254108.12:ENST00000380244.7:ENST00000487045.6:ENST00000487509.6:ENST00000568685.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	14	90	2	1.91668	2.245155	2.57363	0.0051891	3.60806e-5	0.0654282	0.00508987
chr3	6605242	6605342	1357296	0	+	0.38	(0.378,0.408]	chr3	142522	208	INTRON	INTRON	ENSG00000189229	ENSG00000189229.12	ENST00000433639.1:ENST00000655754.1:ENST00000658468.1:ENST00000669512.1:ENST00000667028.1:ENST00000655541.1:ENST00000668643.1:ENST00000671568.1:ENST00000671036.1:ENST00000669798.1:ENST00000655753.1:ENST00000655856.1:ENST00000658398.1:ENST00000661518.1:ENST00000661279.1:ENST00000655495.1:ENST00000663041.1:ENST00000659827.1:ENST00000667716.1:ENST00000668416.1:ENST00000658133.1:ENST00000342990.4:ENST00000660054.1:ENST00000671370.1	lncRNA	lncRNA	lncRNA	lncRNA	6	77	2	2.18512	2.245055	2.30499	0.00902136	0.00683258	0.0851259	0.0713163
chr7	50714572	50714672	3531881	0	-	0.54	(0.515,0.57]	chr7	329479	32	INTRON	INTRON	GRB10	ENSG00000106070.20	ENST00000335866.7:ENST00000398812.6:ENST00000401949.6:ENST00000402578.5:ENST00000644769.1:ENST00000403097.6:ENST00000644879.1:ENST00000406641.5:ENST00000402497.6:ENST00000357271.9:ENST00000643299.1:ENST00000407526.6:ENST00000645075.2:ENST00000439044.7:ENST00000644716.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	56	2	1.65501	2.24501	2.83501	0.016231	0.0117686	0.109464	0.0894475
chr2	112662925	112663025	852245	0	+	0.43	(0.408,0.44]	chr2	95615	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	SLC20A1	ENSG00000144136.11	ENST00000272542.8:ENST00000490674.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	11	103	2	1.39526	2.24493	3.0946	0.024791	7.51561e-4	0.131935	0.0251179
chr10	812337	812435	4541363	0	-	0.530612	(0.515,0.57]	chr10	419197	30	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	LARP4B	ENSG00000107929.16	ENST00000614908.5:ENST00000688365.1:ENST00000316157.8:ENST00000690516.1:ENST00000689323.1:ENST00000688042.1:ENST00000609318.5:ENST00000690211.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	121	2	1.61969	2.24489	2.87009	0.00921295	1.49863e-4	0.0855292	0.011202
chr1	31064915	31065015	412892	0	-	0.5	(0.476,0.515]	chr1	49752	31	INTRON	INTRON	PUM1	ENSG00000134644.16	ENST00000426105.7:ENST00000373747.7:ENST00000257075.9:ENST00000424085.6:ENST00000525843.5:ENST00000440538.6:ENST00000373741.8:ENST00000373742.6:ENST00000526215.5:ENST00000525948.5:ENST00000480602.1:ENST00000524516.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	80	2	1.90361	2.24488	2.58615	0.0102027	0.00515536	0.0850389	0.0650394
chr14	105244884	105244984	5973787	0	-	0.34	(0.32,0.35]	chr14	568020	24	INTRON	INTRON	BRF1	ENSG00000185024.18	ENST00000547530.7:ENST00000379937.6:ENST00000392557.8:ENST00000446501.6:ENST00000551787.5:ENST00000619151.4:ENST00000327359.7:ENST00000440513.7:ENST00000552127.5:ENST00000546417.5:ENST00000550208.1:ENST00000550375.1	protein_coding	protein_coding	protein_coding	protein_coding	3	44	2	1.77704	2.244865	2.71269	0.0719969	0.0181461	0.187322	0.114853
chr15	28244887	28244985	6123266	0	-	0.346939	(0.32,0.35]	chr15	583285	58	INTRON	INTRON	HERC2	ENSG00000128731.18	ENST00000261609.13	protein_coding	protein_coding	protein_coding	protein_coding	3	44	2	1.77704	2.244865	2.71269	0.0719969	0.0181461	0.187322	0.114853
chr22	49475298	49475398	7600832	0	-	0.35	(0.32,0.35]	chr22	778566	337	INTRON	INTRON	MIR3667HG	ENSG00000188511.13	ENST00000414287.5:ENST00000416411.1	lncRNA	lncRNA	lncRNA	lncRNA	3	44	2	1.77704	2.244865	2.71269	0.0719969	0.0181461	0.187322	0.114853
chr10	45990542	45990642	4430567	0	+	0.48	(0.476,0.515]	chr10	408492	13	INTRON	INTRON	TIMM23	ENSG00000265354.4	ENST00000580018.4	protein_coding	protein_coding	protein_coding	protein_coding	11	128	2	2.21861	2.244795	2.27098	0.00215979	0.00138145	0.0417866	0.0341261
chr7	157170303	157170376	3454256	0	+	0.493151	(0.476,0.515]	chr7	322915	1	CDS	CDS:UTR3:EXON_MRNA	UBE3C	ENSG00000009335.18	ENST00000611269.4:ENST00000348165.10:ENST00000389103.4:ENST00000430750.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	83	2	2.21025	2.244725	2.2792	0.00913757	0.00299196	0.0812335	0.0503888
chrX	71535051	71535141	7679961	0	+	0.344444	(0.32,0.35]	chrX	786379	3	INTRON	INTRON	OGT	ENSG00000147162.14	ENST00000373719.8:ENST00000488174.5:ENST00000373701.7:ENST00000472270.1:ENST00000498566.3:ENST00000444774.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	110	2	2.19151	2.2447150000000002	2.29792	0.0114722	0.00175304	0.0888882	0.0387108
chr1	65429941	65430021	137279	0	+	0.4375	(0.408,0.44]	chr1	15485	2	CDS	CDS:EXON_MRNA:INTRON	LEPROT:LEPR	ENSG00000213625.9:ENSG00000116678.20	ENST00000475108.5:ENST00000371060.7:ENST00000371059.7:ENST00000349533.11:ENST00000371065.9:ENST00000488747.5:ENST00000484243.1:ENST00000613538.1	protein_coding	protein_coding	protein_coding	protein_coding	3	38	2	2.21238	2.24468	2.27698	0.0583528	0.0193525	0.167723	0.119831
chr5	69172551	69172651	2380033	0	+	0.43	(0.408,0.44]	chr5	229163	7	INTRON	INTRON	CCNB1	ENSG00000134057.15	ENST00000506572.5:ENST00000256442.10:ENST00000508407.5:ENST00000505500.5:ENST00000503507.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	38	2	2.21238	2.24468	2.27698	0.0583528	0.0193525	0.167723	0.119831
chr7	65004621	65004717	3537679	0	-	0.4375	(0.408,0.44]	chr7	329952	11	EXON_LNCRNA	EXON_LNCRNA:INTRON	ZNF117:ERV3-1	ENSG00000152926.16:ENSG00000213462.5	ENST00000487644.1:ENST00000394323.3:ENST00000528878.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	38	2	2.21238	2.24468	2.27698	0.0583528	0.0193525	0.167723	0.119831
chr11	6944340	6944439	4728075	0	+	0.242424	[0,0.28]	chr11	437698	3	INTRON	INTRON	ZNF215	ENSG00000149054.16	ENST00000527171.5:ENST00000610573.4:ENST00000636097.1:ENST00000278319.10:ENST00000636606.1:ENST00000529755.1:ENST00000414517.6:ENST00000529903.1:ENST00000532533.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	83	2	1.37159	2.2446450000000002	3.1177	0.0634918	0.00849154	0.198135	0.0778788
chr7	149202128	149202227	3445394	0	+	0.373737	(0.35,0.378]	chr7	321367	30	INTRON	INTRON	ZNF282	ENSG00000170265.12	ENST00000610704.5:ENST00000479907.1	protein_coding	protein_coding	protein_coding	protein_coding	4	55	2	2.04224	2.244625	2.44701	0.0363073	0.00900997	0.138959	0.0851009
chr1	16349858	16349958	382594	0	-	0.3	(0.28,0.32]	chr1	44888	341	INTRON	INTRON	FBXO42	ENSG00000037637.11	ENST00000375592.8	protein_coding	protein_coding	protein_coding	protein_coding	7	108	2	1.67134	2.244615	2.81789	0.0387947	7.16126e-4	0.143072	0.0244108
chr7	139377753	139377852	3437774	0	+	0.444444	(0.44,0.476]	chr7	320340	12	INTRON	INTRON	LUC7L2:FMC1-LUC7L2	ENSG00000146963.18:ENSG00000269955.2	ENST00000541170.7:ENST00000541515.3:ENST00000608368.5:ENST00000619796.4:ENST00000354926.9:ENST00000456182.5:ENST00000263545.7:ENST00000463912.5:ENST00000498518.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	128	2	2.12263	2.244605	2.36658	0.00692375	4.01032e-4	0.0718189	0.0179994
chr5	27282090	27282190	2327682	0	+	0.37	(0.35,0.378]	chr5	225084	6	INTRON	INTRON	PURPL	ENSG00000250337.8	ENST00000651409.1:ENST00000650981.1	lncRNA	lncRNA	lncRNA	lncRNA	4	55	2	2.09331	2.24457	2.39583	0.0315717	0.0107976	0.13151	0.0920575
chr17	63754818	63754918	6811784	0	-	0.44	(0.408,0.44]	chr17	673155	3	SS3_PROX	SS3_PROX:INTRON	CCDC47	ENSG00000108588.15	ENST00000225726.10:ENST00000403162.7:ENST00000582252.1:ENST00000582331.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	78	2	1.50652	2.24456	2.9826	0.0410276	9.23082e-4	0.1451	0.0278392
chr1	17411329	17411426	384693	0	-	0.484536	(0.476,0.515]	chr1	45443	9	INTRON	INTRON	RCC2	ENSG00000179051.14	ENST00000375436.9:ENST00000375433.3	protein_coding	protein_coding	protein_coding	protein_coding	6	69	2	1.82798	2.24455	2.66112	0.0184548	0.0044598	0.116598	0.0592169
chr7	75190470	75190566	3557313	0	-	0.416667	(0.408,0.44]	chr7	331283	14	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:EXON_PSEUDO:SS5_ADJ:SS5_PROX:INTRON	GTF2IP1	ENSG00000277053.4	ENST00000618412.4:ENST00000622829.4:ENST00000621948.4:ENST00000616377.4:ENST00000614592.4	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript:transcribed_unprocessed_pseudogene	11	117	2	1.7906	2.24453	2.69846	0.00570519	0.00127877	0.0681157	0.0326395
chr2	144443085	144443185	1241027	0	-	0.22	[0,0.28]	chr2	131703	122	INTRON	INTRON	ZEB2	ENSG00000169554.23	ENST00000636471.1:ENST00000627532.3:ENST00000638128.1:ENST00000637304.1:ENST00000636179.1:ENST00000636820.1:ENST00000637045.1:ENST00000419938.5:ENST00000409487.7:ENST00000440875.6:ENST00000636732.2:ENST00000636026.2:ENST00000675069.1:ENST00000689298.1:ENST00000539609.7:ENST00000558170.6:ENST00000303660.8:ENST00000427902.5:ENST00000637267.2:ENST00000392861.6:ENST00000431672.4:ENST00000409211.5:ENST00000465308.5:ENST00000434448.5:ENST00000472146.5:ENST00000461784.3:ENST00000476394.5:ENST00000637591.2:ENST00000479735.1:ENST00000453352.5:ENST00000435831.5:ENST00000444559.5:ENST00000630572.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	55	2	1.85666	2.24452	2.63238	0.0660997	0.0259691	0.181924	0.133676
chr17	51283555	51283654	6627810	0	+	0.30303	(0.28,0.32]	chr17	647383	27	INTRON	INTRON	UTP18	ENSG00000011260.14	ENST00000225298.12:ENST00000508506.3:ENST00000583725.5:ENST00000583205.5:ENST00000579261.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	108	2	1.83163	2.2444800000000003	2.65733	0.00983832	0.0061571	0.0877296	0.0676501
chr10	15827082	15827181	4564830	0	-	0.40404	(0.378,0.408]	chr10	421217	50	INTRON	INTRON	MINDY3	ENSG00000148481.14	ENST00000477891.1:ENST00000277632.8:ENST00000418767.5:ENST00000436829.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	29	2	2.2259	2.24421	2.26252	0.0662381	0.056222	0.18407	0.181924
chr16	24773536	24773636	6329654	0	+	0.39	(0.378,0.408]	chr16	605945	148	INTRON	INTRON	TNRC6A	ENSG00000090905.19	ENST00000395799.8:ENST00000315183.11:ENST00000562829.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	29	2	2.2259	2.24421	2.26252	0.0662381	0.056222	0.18407	0.181924
chr16	30078739	30078837	6336801	0	+	0.387755	(0.378,0.408]	chr16	607198	19	INTRON	INTRON	PPP4C	ENSG00000149923.14	ENST00000563732.5:ENST00000279387.12:ENST00000567040.5:ENST00000568810.5:ENST00000563597.5:ENST00000563200.5:ENST00000564966.5:ENST00000566749.5:ENST00000562664.5:ENST00000627746.2:ENST00000567828.1:ENST00000567642.1:ENST00000562222.5:ENST00000561610.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	29	2	2.2259	2.24421	2.26252	0.0662381	0.056222	0.18407	0.181924
chr3	153165040	153165140	1537069	0	+	0.38	(0.378,0.408]	chr3	160077	19	UTR3	UTR3:EXON_MRNA	RAP2B	ENSG00000181467.5	ENST00000323534.5	protein_coding	protein_coding	protein_coding	protein_coding	2	29	2	2.2259	2.24421	2.26252	0.0662381	0.056222	0.18407	0.181924
chr4	32182568	32182668	1943279	0	+	0.38	(0.378,0.408]	chr4	194749	241	INTRON	INTRON	LINC02506	ENSG00000251129.3	ENST00000665582.2:ENST00000667252.2:ENST00000660373.2:ENST00000684849.1:ENST00000686730.1:ENST00000685407.1:ENST00000655951.1	lncRNA	lncRNA	lncRNA	lncRNA	2	29	2	2.2259	2.24421	2.26252	0.0662381	0.056222	0.18407	0.181924
chr5	105389960	105390060	2696326	0	-	0.38	(0.378,0.408]	chr5	254248	1437	INTRON	INTRON	ENSG00000251574	ENSG00000251574.8	ENST00000503650.1	lncRNA	lncRNA	lncRNA	lncRNA	2	29	2	2.2259	2.24421	2.26252	0.0662381	0.056222	0.18407	0.181924
chr7	107517537	107517637	3612561	0	-	0.4	(0.378,0.408]	chr7	336698	367	INTRON	INTRON	COG5	ENSG00000164597.15	ENST00000297135.9:ENST00000347053.8:ENST00000393603.7:ENST00000475638.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	29	2	2.2259	2.24421	2.26252	0.0662381	0.056222	0.18407	0.181924
chr9	33942919	33943019	4244766	0	-	0.4	(0.378,0.408]	chr9	390393	1	SS5_PROX	SS5_PROX:INTRON	UBAP2	ENSG00000137073.24	ENST00000379238.7:ENST00000683659.1:ENST00000682239.1:ENST00000683140.1:ENST00000682209.1:ENST00000681980.1:ENST00000360802.6:ENST00000683252.1:ENST00000684158.1:ENST00000682914.1:ENST00000683717.1:ENST00000379239.9:ENST00000683084.1:ENST00000684754.1:ENST00000629575.2:ENST00000379225.2:ENST00000684298.1:ENST00000412543.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	29	2	2.2259	2.24421	2.26252	0.0662381	0.056222	0.18407	0.181924
chr9	128088864	128088964	4202638	0	+	0.4	(0.378,0.408]	chr9	383913	199	INTRON	INTRON	SLC25A25	ENSG00000148339.13	ENST00000373068.6:ENST00000373069.10	protein_coding	protein_coding	protein_coding	protein_coding	2	29	2	2.2259	2.24421	2.26252	0.0662381	0.056222	0.18407	0.181924
chr12	76552424	76552524	5372312	0	-	0.34	(0.32,0.35]	chr12	512509	141	INTRON	INTRON	OSBPL8	ENSG00000091039.17	ENST00000261183.8:ENST00000393249.6:ENST00000611266.4:ENST00000393250.8:ENST00000547540.5:ENST00000553139.5:ENST00000549570.5:ENST00000550628.5:ENST00000549646.5:ENST00000551927.5:ENST00000547544.5:ENST00000552178.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	108	2	1.32435	2.2441750000000003	3.164	0.0459022	7.36249e-4	0.164984	0.02495
chr10	94603210	94603310	4500217	0	+	0.35	(0.32,0.35]	chr10	414337	12	INTRON	INTRON	ENSG00000244332:HELLS	ENSG00000244332.1:ENSG00000119969.15	ENST00000432120.1:ENST00000371327.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	5	71	2	2.06478	2.24415	2.42352	0.0147778	0.0122807	0.106702	0.091087
chr22	21786757	21786857	7560571	0	-	0.41	(0.408,0.44]	chr22	773360	134	INTRON	INTRON	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	22	246	2	2.12512	2.2439999999999998	2.36288	4.61956e-4	2.91107e-4	0.0198535	0.0151866
chr16	67195147	67195214	6366772	0	+	0.58209	(0.57,1]	chr16	611580	2	SS5_PROX	SS5_PROX:INTRON	E2F4	ENSG00000205250.9	ENST00000379378.8:ENST00000567007.5:ENST00000568839.5:ENST00000569573.1:ENST00000565226.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	38	2	2.16779	2.24398	2.32017	0.00900694	0.00488159	0.0803518	0.0640618
chr1	1394146	1394239	359862	0	-	0.430108	(0.408,0.44]	chr1	41791	3	INTRON	INTRON	CCNL2	ENSG00000221978.13	ENST00000400809.8:ENST00000482621.5:ENST00000496007.5:ENST00000481223.6:ENST00000488340.5:ENST00000471930.5:ENST00000408918.8:ENST00000473872.5:ENST00000425598.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	21	232	2	2.12512	2.243975	2.36283	6.39428e-4	2.91107e-4	0.0231685	0.0151866
chr1	36254791	36254890	73235	0	+	0.373737	(0.35,0.378]	chr1	9371	290	INTRON	INTRON	THRAP3	ENSG00000054118.15	ENST00000469141.6:ENST00000648638.1:ENST00000354618.10	protein_coding	protein_coding	protein_coding	protein_coding	4	49	2	1.65083	2.24396	2.83709	0.0521072	0.01435	0.177022	0.0966737
chr12	49989345	49989437	5322287	0	-	0.326087	(0.32,0.35]	chr12	507306	3	UTR3	UTR3:EXON_MRNA:INTRON	RACGAP1	ENSG00000161800.13	ENST00000548961.5:ENST00000312377.10:ENST00000427314.6:ENST00000454520.6	protein_coding	protein_coding	protein_coding	protein_coding	4	60	2	1.77704	2.243785	2.71053	0.0719969	0.00346747	0.187322	0.0539802
chr22	21696449	21696548	7482782	0	+	0.535354	(0.515,0.57]	chr22	763417	4	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	PPIL2	ENSG00000100023.20	ENST00000679795.1:ENST00000679540.1:ENST00000679580.1:ENST00000681286.1:ENST00000680061.1:ENST00000681338.1:ENST00000681956.1:ENST00000679827.1:ENST00000679534.1:ENST00000679479.1:ENST00000680393.1:ENST00000335025.12:ENST00000498109.2:ENST00000398831.8:ENST00000681394.1:ENST00000679477.1:ENST00000626352.2:ENST00000417788.5:ENST00000681791.1:ENST00000679692.1:ENST00000680962.1:ENST00000680094.1:ENST00000680434.1:ENST00000680109.1:ENST00000406385.1:ENST00000681137.1:ENST00000680860.1:ENST00000680183.1:ENST00000446951.1:ENST00000681735.1:ENST00000679564.1:ENST00000680113.1:ENST00000680573.1:ENST00000462188.1:ENST00000681027.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	92	2	1.94094	2.243745	2.54655	0.00719628	8.595e-4	0.0756137	0.0267428
chr20	3997168	3997268	7309224	0	-	0.41	(0.408,0.44]	chr20	744300	224	INTRON	INTRON	RNF24	ENSG00000101236.17	ENST00000336095.10:ENST00000358395.11:ENST00000545616.2	protein_coding	protein_coding	protein_coding	protein_coding	6	70	2	1.62122	2.24367	2.86612	0.0394247	0.00157924	0.143072	0.0366789
chr2	9844241	9844341	689073	0	+	0.46	(0.44,0.476]	chr2	80813	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TAF1B	ENSG00000115750.17	ENST00000625239.2:ENST00000263663.10:ENST00000402170.5:ENST00000404869.7:ENST00000497182.1:ENST00000434858.5:ENST00000416181.1:ENST00000469895.5:ENST00000480197.5:ENST00000490432.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	53	2	1.93084	2.243665	2.55649	0.0443175	0.00670547	0.162302	0.0707084
chr8	63182965	63183064	3773133	0	+	0.535354	(0.515,0.57]	chr8	349936	72	INTRON	INTRON	YTHDF3	ENSG00000185728.17	ENST00000617200.1:ENST00000623280.3:ENST00000539294.6:ENST00000621957.4:ENST00000517371.5:ENST00000615676.1:ENST00000621413.4:ENST00000612880.4:ENST00000617952.4:ENST00000621890.4:ENST00000619337.4:ENST00000613853.4:ENST00000621820.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	17	165	2	2.24105	2.24362	2.24619	8.35887e-4	2.52483e-4	0.0266487	0.0141454
chr19	9817449	9817548	7134023	0	-	0.323232	(0.32,0.35]	chr19	719005	24	INTRON	INTRON	FBXL12	ENSG00000127452.9	ENST00000589626.5:ENST00000586651.5:ENST00000247977.9:ENST00000588922.5:ENST00000585379.5:ENST00000592732.5:ENST00000589438.1:ENST00000592067.1:ENST00000590808.1:ENST00000590277.1:ENST00000586469.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	53	2	1.97654	2.243575	2.51061	0.0364463	0.0199113	0.138959	0.120668
chr4	150972933	150973033	2271348	0	-	0.35	(0.32,0.35]	chr4	220921	435	INTRON	INTRON	LRBA	ENSG00000198589.14	ENST00000357115.9:ENST00000651943.2:ENST00000510413.5:ENST00000651035.1:ENST00000507224.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	53	2	1.97654	2.243575	2.51061	0.0364463	0.0199113	0.138959	0.120668
chr1	110879537	110879637	183505	0	+	0.32	(0.28,0.32]	chr1	20355	59	INTRON	INTRON	CD53	ENSG00000143119.14	ENST00000648608.1:ENST00000271324.6:ENST00000471220.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	35	2	2.18975	2.2434950000000002	2.29724	0.0776042	0.0554156	0.196285	0.18407
chr4	32095859	32095959	1942407	0	+	0.29	(0.28,0.32]	chr4	194727	977	INTRON	INTRON	LINC02506	ENSG00000251129.3	ENST00000662669.1:ENST00000665582.2:ENST00000667252.2:ENST00000660373.2:ENST00000684849.1:ENST00000513211.2:ENST00000659613.1:ENST00000657576.1:ENST00000686730.1:ENST00000685407.1:ENST00000685455.1:ENST00000655951.1	lncRNA	lncRNA	lncRNA	lncRNA	2	35	2	2.18975	2.2434950000000002	2.29724	0.0776042	0.0554156	0.196285	0.18407
chr4	169661146	169661246	2080285	0	+	0.3	(0.28,0.32]	chr4	205618	3	INTRON	INTRON	CLCN3	ENSG00000109572.15	ENST00000511092.5:ENST00000347613.8:ENST00000360642.7:ENST00000512813.5:ENST00000513761.6:ENST00000613795.4:ENST00000507875.5	protein_coding	protein_coding	protein_coding	protein_coding	2	35	2	2.18975	2.2434950000000002	2.29724	0.0776042	0.0554156	0.196285	0.18407
chr21	43874944	43875044	7413887	0	+	0.42	(0.408,0.44]	chr21	755688	72	INTRON	INTRON	AGPAT3	ENSG00000160216.21	ENST00000291572.13:ENST00000448287.5	protein_coding	protein_coding	protein_coding	protein_coding	5	64	2	1.69566	2.24345	2.79124	0.0453922	0.00276922	0.164236	0.0469265
chr1	182845333	182845433	273037	0	+	0.28	[0,0.28]	chr1	31871	15	INTRON	INTRON	DHX9	ENSG00000135829.17	ENST00000367549.4:ENST00000483416.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	67	2	1.62991	2.243405	2.8569	0.0671202	0.013822	0.183051	0.10247
chr1	84504221	84504319	496001	0	-	0.377551	(0.35,0.378]	chr1	58763	5	INTRON	INTRON	GNG5	ENSG00000174021.12	ENST00000689285.1:ENST00000370645.9:ENST00000370641.3:ENST00000686161.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	56	2	1.54563	2.24337	2.94111	0.046845	0.0104563	0.167716	0.0855102
chr1	28237480	28237573	55416	0	+	0.44086	(0.44,0.476]	chr1	7181	12	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	ATP5IF1	ENSG00000130770.18	ENST00000497986.5:ENST00000335514.10:ENST00000468425.2:ENST00000465645.1	protein_coding	protein_coding	protein_coding	protein_coding	9	103	2	1.88052	2.24336	2.6062	0.00808369	0.00148054	0.0766625	0.0353633
chr5	113015067	113015166	2453780	0	+	0.292929	(0.28,0.32]	chr5	235130	17	UTR3	UTR3:EXON_MRNA	DCP2	ENSG00000172795.17	ENST00000515408.5:ENST00000389063.3:ENST00000674880.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	19	251	2	1.80828	2.2432950000000003	2.67831	0.00265385	5.71317e-4	0.0474945	0.0220865
chr16	70063688	70063788	6509699	0	-	0.35	(0.32,0.35]	chr16	630373	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	PDXDC2P-NPIPB14P:PDXDC2P	ENSG00000196696.13:ENSG00000255185.6	ENST00000531894.5:ENST00000530079.5:ENST00000529089.1:ENST00000534700.6:ENST00000533264.5:ENST00000534580.5:ENST00000527016.1:ENST00000525173.1	lncRNA	lncRNA	lncRNA:transcribed_unprocessed_pseudogene	lncRNA:processed_transcript:transcribed_unprocessed_pseudogene	4	60	2	2.13945	2.243275	2.3471	0.0254517	0.0156413	0.133676	0.101393
chr1	96787347	96787447	168608	0	+	0.32	(0.28,0.32]	chr1	18249	17	INTRON	INTRON	PTBP2	ENSG00000117569.19	ENST00000482253.5:ENST00000675735.1:ENST00000609116.5:ENST00000674951.1:ENST00000675080.1:ENST00000426398.3:ENST00000370197.5:ENST00000370198.5:ENST00000476419.5:ENST00000676292.1:ENST00000676096.1:ENST00000675365.1:ENST00000674579.1:ENST00000675401.1:ENST00000459735.5:ENST00000476783.5:ENST00000492905.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	90	2	1.81492	2.2432250000000002	2.67153	0.0253829	0.00436402	0.12011	0.060356
chr19	10685304	10685396	7013550	0	+	0.543478	(0.515,0.57]	chr19	696841	4	UTR3	UTR3:EXON_MRNA:INTRON	ILF3	ENSG00000129351.17	ENST00000449870.5:ENST00000587928.5:ENST00000407004.7:ENST00000250241.12:ENST00000590261.5:ENST00000588657.5:ENST00000592763.5:ENST00000590869.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	99	2	1.93988	2.243215	2.54655	0.00481033	8.595e-4	0.0638089	0.0267428
chr12	110397848	110397947	5409140	0	-	0.464646	(0.44,0.476]	chr12	516463	10	INTRON	INTRON	ANAPC7:ENSG00000258210	ENSG00000196510.14:ENSG00000258210.1	ENST00000455511.9:ENST00000450008.3:ENST00000552170.2:ENST00000550231.1:ENST00000464697.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay	10	117	2	1.89689	2.2431799999999997	2.58947	0.00630125	8.97428e-4	0.0722266	0.0276857
chr10	50335698	50335798	4617795	0	-	0.38	(0.378,0.408]	chr10	425400	80	INTRON	INTRON	SGMS1	ENSG00000198964.14	ENST00000429490.5:ENST00000361781.7:ENST00000602619.1:ENST00000361543.3:ENST00000626236.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	64	2	1.89251	2.243155	2.5938	0.0251428	0.00614976	0.133404	0.0676501
chr9	111464219	111464319	4315091	0	-	0.43	(0.408,0.44]	chr9	396838	123	INTRON	INTRON	ECPAS	ENSG00000136813.15	ENST00000684092.1:ENST00000338205.9:ENST00000259335.8:ENST00000602447.5:ENST00000602978.1	protein_coding	protein_coding	protein_coding	protein_coding	4	47	2	1.74108	2.24313	2.74518	0.0424099	0.0152229	0.148082	0.108535
chr16	89482546	89482646	6543522	0	-	0.52	(0.515,0.57]	chr16	634281	509	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	87	2	1.47127	2.243125	3.01498	0.0333563	1.49781e-4	0.134145	0.0106137
chr18	9116041	9116141	6868727	0	+	0.31	(0.28,0.32]	chr18	680510	107	INTRON	INTRON	NDUFV2	ENSG00000178127.13	ENST00000577703.1:ENST00000318388.11:ENST00000583375.5:ENST00000400033.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	15	187	2	1.81753	2.243115	2.6687	0.00321388	0.00217752	0.0523065	0.0417893
chr15	63660136	63660236	6199108	0	-	0.5	(0.476,0.515]	chr15	591181	2	SS3_PROX	SS3_PROX:INTRON	HERC1	ENSG00000103657.14	ENST00000443617.7	protein_coding	protein_coding	protein_coding	protein_coding	8	95	2	1.99699	2.24308	2.48917	0.0110277	0.00110233	0.0873897	0.03038
chr15	88899811	88899911	6256696	0	-	0.41	(0.408,0.44]	chr15	596859	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	MFGE8	ENSG00000140545.16	ENST00000268150.13:ENST00000558018.5:ENST00000558029.6:ENST00000695566.1:ENST00000268151.11:ENST00000566497.5:ENST00000695774.1:ENST00000560937.1:ENST00000542878.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	78	2	1.99397	2.243075	2.49218	0.00855168	0.00610802	0.0780217	0.0706941
chr10	12022361	12022461	4557576	0	-	0.35	(0.32,0.35]	chr10	420618	78	INTRON	INTRON	UPF2	ENSG00000151461.20	ENST00000357604.10:ENST00000356352.6:ENST00000397053.6	protein_coding	protein_coding	protein_coding	protein_coding	6	86	2	1.8903	2.24306	2.59582	0.0298043	0.00178944	0.129138	0.0392749
chr5	168495536	168495636	2540513	0	+	0.34	(0.32,0.35]	chr5	242472	1	SS5_PROX	SS5_PROX:INTRON	RARS1	ENSG00000113643.9	ENST00000231572.8:ENST00000520013.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	59	2	1.94202	2.24305	2.54408	0.0486128	0.00659077	0.153946	0.0737338
chr6	135019280	135019379	3225111	0	-	0.333333	(0.32,0.35]	chr6	299837	161	INTRON	INTRON	HBS1L	ENSG00000112339.15	ENST00000367837.10:ENST00000527578.5:ENST00000415177.6:ENST00000367826.6:ENST00000533274.5:ENST00000526100.5:ENST00000529641.5:ENST00000527507.1:ENST00000314674.7:ENST00000524715.5:ENST00000529882.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	59	2	1.94202	2.24305	2.54408	0.0486128	0.00659077	0.153946	0.0737338
chr15	101281882	101281982	6269898	0	-	0.49	(0.476,0.515]	chr15	597985	1	SS3_PROX	SS3_PROX:INTRON	SNRPA1	ENSG00000131876.18	ENST00000254193.11:ENST00000558036.5:ENST00000559309.5:ENST00000560307.5:ENST00000560433.5:ENST00000394082.8:ENST00000540017.6:ENST00000560496.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	50	2	2.10874	2.2430250000000003	2.37731	0.0285608	0.0111793	0.12666	0.0937192
chr7	92092488	92092580	3352588	0	+	0.206522	[0,0.28]	chr7	312414	10	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	AKAP9	ENSG00000127914.19	ENST00000680534.1:ENST00000680513.1:ENST00000680072.1:ENST00000679821.1:ENST00000356239.8:ENST00000679521.1:ENST00000680181.1:ENST00000681722.1:ENST00000680766.1:ENST00000679448.1:ENST00000681412.1:ENST00000680047.1:ENST00000679474.1:ENST00000680952.1:ENST00000679457.1:ENST00000359028.7:ENST00000491695.2:ENST00000681216.1:ENST00000680365.1:ENST00000394534.7:ENST00000487692.2:ENST00000487258.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	74	2	2.24053	2.242995	2.24546	0.0256186	0.0206502	0.122348	0.120376
chr10	68967992	68968089	4443611	0	+	0.484536	(0.476,0.515]	chr10	409857	4	INTRON	INTRON	DDX21	ENSG00000165732.14	ENST00000685106.1:ENST00000687162.1:ENST00000684824.1:ENST00000354185.9:ENST00000686528.1:ENST00000690650.1:ENST00000690316.1:ENST00000620315.2:ENST00000685513.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	95	2	2.20678	2.24299	2.2792	0.00484957	0.00299196	0.0605773	0.0503888
chr5	146241625	146241725	2514502	0	+	0.53	(0.515,0.57]	chr5	240194	38	INTRON	INTRON	ENSG00000275740:RBM27	ENSG00000275740.1:ENSG00000091009.8	ENST00000506502.2:ENST00000265271.7	protein_coding	protein_coding	protein_coding	protein_coding	5	52	2	1.97035	2.24298	2.51561	0.0195832	0.00635044	0.109483	0.0723103
chr2	144489693	144489792	1241501	0	-	0.50505	(0.476,0.515]	chr2	131732	75	INTRON	INTRON	ZEB2	ENSG00000169554.23	ENST00000636471.1:ENST00000627532.3:ENST00000638128.1:ENST00000637304.1:ENST00000636179.1:ENST00000419938.5:ENST00000409487.7:ENST00000636732.2:ENST00000636026.2:ENST00000675069.1:ENST00000689298.1:ENST00000539609.7:ENST00000558170.6:ENST00000303660.8:ENST00000427902.5:ENST00000637267.2:ENST00000392861.6:ENST00000431672.4:ENST00000409211.5:ENST00000465308.5:ENST00000434448.5:ENST00000472146.5:ENST00000461784.3:ENST00000476394.5:ENST00000637591.2:ENST00000479735.1:ENST00000453352.5:ENST00000435831.5:ENST00000444559.5:ENST00000630572.2:ENST00000484313.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	85	2	2.2344	2.24289	2.25138	0.00692374	0.00432475	0.0753208	0.0579331
chr8	53991501	53991599	3952989	0	-	0.489796	(0.476,0.515]	chr8	362539	29	INTRON	INTRON	TCEA1	ENSG00000187735.15	ENST00000396401.7:ENST00000521604.7:ENST00000521086.6:ENST00000522635.5:ENST00000522397.5:ENST00000640382.1:ENST00000640041.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	99	2	1.67283	2.242855	2.81288	0.0332283	1.95709e-4	0.134145	0.0122528
chr10	97758735	97758835	4505522	0	+	0.4	(0.378,0.408]	chr10	414838	1	SS3_PROX	SS3_PROX:INTRON	ZFYVE27	ENSG00000155256.18	ENST00000337540.11:ENST00000370613.7:ENST00000370610.7:ENST00000357540.8:ENST00000393677.8:ENST00000423811.3:ENST00000684270.1:ENST00000359980.5:ENST00000477521.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	39	2	2.17608	2.242845	2.30961	0.055088	0.0218783	0.165463	0.123836
chr14	30964154	30964254	5857250	0	-	0.4	(0.378,0.408]	chr14	556505	4	SS5_PROX	SS5_PROX:INTRON	STRN3	ENSG00000196792.12	ENST00000355683.9:ENST00000357479.10:ENST00000555358.5:ENST00000555152.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	39	2	2.17608	2.242845	2.30961	0.055088	0.0218783	0.165463	0.123836
chr9	128071678	128071777	4202466	0	+	0.50505	(0.476,0.515]	chr9	383913	27	INTRON	INTRON	SLC25A25	ENSG00000148339.13	ENST00000373068.6:ENST00000373069.10	protein_coding	protein_coding	protein_coding	protein_coding	11	124	2	1.91154	2.242845	2.57415	0.0043021	9.37618e-4	0.0599409	0.0280776
chr19	15402095	15402193	7147960	0	-	0.469388	(0.44,0.476]	chr19	722108	6	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	AKAP8L	ENSG00000011243.19	ENST00000594594.6:ENST00000679638.1:ENST00000595465.6:ENST00000599137.6:ENST00000397410.10:ENST00000609519.5:ENST00000593845.5:ENST00000680649.1:ENST00000596213.6:ENST00000681170.1:ENST00000680703.1:ENST00000680017.1:ENST00000595879.6:ENST00000680303.1:ENST00000679634.1:ENST00000681744.1:ENST00000680803.1:ENST00000681459.1:ENST00000680323.1:ENST00000680774.1:ENST00000680302.1:ENST00000680103.1:ENST00000680642.1:ENST00000681405.1:ENST00000680957.1:ENST00000680865.1:ENST00000680363.1:ENST00000595087.6:ENST00000600065.6:ENST00000594893.5:ENST00000595136.5:ENST00000599488.5:ENST00000597994.5:ENST00000596195.5:ENST00000600247.5:ENST00000595067.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	51	2	1.83899	2.24284	2.64669	0.0589734	0.0040295	0.167915	0.0578376
chr20	32401709	32401808	7256260	0	+	0.484848	(0.476,0.515]	chr20	737076	293	INTRON	INTRON	ASXL1	ENSG00000171456.21	ENST00000651418.1:ENST00000375687.10:ENST00000613218.4:ENST00000644587.1:ENST00000620121.4:ENST00000646985.1:ENST00000643168.1:ENST00000306058.9:ENST00000645688.1:ENST00000470145.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	92	2	2.0107	2.2428299999999997	2.47496	0.00572098	0.00323541	0.0681402	0.0507251
chr12	94322908	94323008	5388718	0	-	0.52	(0.515,0.57]	chr12	513788	95	INTRON	INTRON	CEP83	ENSG00000173588.16	ENST00000552632.5:ENST00000397809.10:ENST00000339839.9:ENST00000547232.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	39	2	1.49871	2.24274	2.98677	0.0770828	0.00632549	0.196285	0.0722266
chr17	30135823	30135923	6587580	0	+	0.33	(0.32,0.35]	chr17	640563	77	INTRON	INTRON	NSRP1	ENSG00000126653.18	ENST00000540900.7:ENST00000612959.4:ENST00000247026.10:ENST00000577289.6:ENST00000584154.5:ENST00000394826.8:ENST00000475652.5:ENST00000584317.5:ENST00000583301.5:ENST00000585881.5:ENST00000467446.6:ENST00000580103.6:ENST00000581048.5:ENST00000588614.1:ENST00000589608.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	81	2	1.98909	2.242595	2.4961	0.0108865	0.00967886	0.0923273	0.0828038
chr5	19054692	19054792	2569612	0	-	0.46	(0.44,0.476]	chr5	246210	160	INTRON	INTRON	ENSG00000249174	ENSG00000249174.1	ENST00000504827.1	lncRNA	lncRNA	lncRNA	lncRNA	6	74	2	1.81283	2.24255	2.67227	0.0343005	0.0010793	0.135641	0.0300133
chr17	31989883	31989982	6596214	0	+	0.363636	(0.35,0.378]	chr17	641589	10	INTRON	INTRON	SUZ12	ENSG00000178691.11	ENST00000322652.10:ENST00000580398.1	protein_coding	protein_coding	protein_coding	protein_coding	5	56	2	1.59505	2.24254	2.89003	0.040425	0.0122391	0.161534	0.0910127
chr3	6531931	6532031	1356560	0	+	0.37	(0.35,0.378]	chr3	142508	188	INTRON	INTRON	ENSG00000189229	ENSG00000189229.12	ENST00000660158.1:ENST00000433639.1:ENST00000655754.1:ENST00000653839.1:ENST00000662846.1:ENST00000659876.1:ENST00000414438.2:ENST00000658468.1:ENST00000414603.1:ENST00000669512.1:ENST00000667028.1:ENST00000655541.1:ENST00000668643.1:ENST00000671568.1:ENST00000671036.1:ENST00000669798.1:ENST00000655753.1:ENST00000655856.1:ENST00000658398.1:ENST00000661518.1:ENST00000661279.1:ENST00000655495.1:ENST00000663041.1:ENST00000659827.1:ENST00000667716.1:ENST00000662508.1:ENST00000668416.1:ENST00000658133.1:ENST00000659651.1:ENST00000342990.4:ENST00000660054.1:ENST00000671370.1	lncRNA	lncRNA	lncRNA	lncRNA	5	56	2	1.59505	2.24254	2.89003	0.040425	0.0122391	0.161534	0.0910127
chr16	88756763	88756863	6539937	0	-	0.47	(0.44,0.476]	chr16	633998	69	INTRON	INTRON	PIEZO1	ENSG00000103335.22	ENST00000301015.14	protein_coding	protein_coding	protein_coding	protein_coding	3	40	2	2.19078	2.242515	2.29425	0.0518406	0.0226089	0.176696	0.117489
chr19	10163646	10163741	7134547	0	-	0.473684	(0.44,0.476]	chr19	719188	4	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	DNMT1	ENSG00000130816.17	ENST00000340748.8:ENST00000359526.9:ENST00000592705.5:ENST00000679103.1:ENST00000677634.1:ENST00000676820.1:ENST00000677250.1:ENST00000677013.1:ENST00000677685.1:ENST00000677616.1:ENST00000676604.1:ENST00000678024.1:ENST00000676868.1:ENST00000677783.1:ENST00000676610.1:ENST00000678804.1:ENST00000679313.1:ENST00000677946.1:ENST00000589349.5:ENST00000591764.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	40	2	2.19078	2.242515	2.29425	0.0518406	0.0226089	0.176696	0.117489
chrX	124562875	124562968	7880975	0	-	0.322581	(0.32,0.35]	chrX	802721	7	INTRON	INTRON	TENM1	ENSG00000009694.13	ENST00000371130.7:ENST00000422452.2	protein_coding	protein_coding	protein_coding	protein_coding	7	98	2	1.91908	2.242485	2.56589	0.0169079	0.00204522	0.103859	0.041908
chr14	103714538	103714634	5972360	0	-	0.510417	(0.476,0.515]	chr14	567702	4	INTRON	INTRON	XRCC3	ENSG00000126215.14	ENST00000554913.5:ENST00000352127.11:ENST00000555055.6:ENST00000554974.5:ENST00000557439.5:ENST00000553361.5:ENST00000555964.5:ENST00000555231.5:ENST00000556682.5:ENST00000553332.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	99	2	1.95469	2.24247	2.53025	0.0115753	0.0011567	0.0962115	0.0310955
chr17	76734601	76734698	6844230	0	-	0.28866000000000003	(0.28,0.32]	chr17	677087	6	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SRSF2	ENSG00000161547.17	ENST00000392485.2:ENST00000359995.10:ENST00000585202.5:ENST00000582449.5:ENST00000586778.1:ENST00000452355.7:ENST00000589919.1:ENST00000508921.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	17	247	2	1.75413	2.242455	2.73078	0.0049544	2.82354e-4	0.0646039	0.0154814
chr7	50667623	50667723	3531407	0	-	0.35	(0.32,0.35]	chr7	329446	403	INTRON	INTRON	GRB10	ENSG00000106070.20	ENST00000335866.7:ENST00000398812.6:ENST00000398810.6:ENST00000401949.6:ENST00000402578.5:ENST00000644769.1:ENST00000403097.6:ENST00000644879.1:ENST00000406641.5:ENST00000402497.6:ENST00000357271.9:ENST00000643299.1:ENST00000407526.6:ENST00000645075.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	54	2	2.10695	2.242445	2.37794	0.0498601	0.0127483	0.156383	0.0987441
chr12	57795580	57795676	5148842	0	+	0.364583	(0.35,0.378]	chr12	487204	22	INTRON	INTRON	TSFM	ENSG00000123297.20	ENST00000540550.6:ENST00000323833.12:ENST00000651899.1:ENST00000548851.5:ENST00000550559.5:ENST00000652027.2:ENST00000651066.1:ENST00000543727.5:ENST00000457189.1:ENST00000497617.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	76	2	1.60653	2.24244	2.87835	0.0427748	0.00160563	0.148082	0.0367961
chr5	134172515	134172613	2726312	0	-	0.336735	(0.32,0.35]	chr5	256501	11	INTRON	INTRON	SKP1	ENSG00000113558.19	ENST00000353411.11:ENST00000522552.5:ENST00000521216.5:ENST00000517625.5:ENST00000523966.5:ENST00000522855.5:ENST00000328392.10:ENST00000519054.5:ENST00000519321.5:ENST00000520417.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	101	2	1.36611	2.2424299999999997	3.11875	0.0483152	8.95981e-4	0.172011	0.027646
chr17	46192218	46192318	6784863	0	-	0.38	(0.378,0.408]	chr17	669246	4	SS5_PROX	SS5_PROX:INTRON	KANSL1	ENSG00000120071.15	ENST00000574590.6:ENST00000572904.6:ENST00000432791.7:ENST00000575318.6:ENST00000638275.1:ENST00000262419.10:ENST00000648792.1:ENST00000639150.1:ENST00000571698.2:ENST00000639375.1:ENST00000638269.1:ENST00000639356.1:ENST00000574655.6:ENST00000639099.1:ENST00000638902.1:ENST00000576739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	76	2	2.17296	2.2423849999999996	2.31181	0.0110512	0.00548372	0.0873897	0.0671431
chr17	29407401	29407501	6585806	0	+	0.39	(0.378,0.408]	chr17	640377	34	INTRON	INTRON	TAOK1	ENSG00000160551.12	ENST00000261716.8:ENST00000583121.5:ENST00000587277.1:ENST00000536202.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	39	2	1.81685	2.24235	2.66785	0.0597868	0.0224639	0.189982	0.11692
chr5	109076396	109076496	2447800	0	+	0.4	(0.378,0.408]	chr5	234551	288	INTRON	INTRON	FER	ENSG00000151422.14	ENST00000281092.9:ENST00000504143.6:ENST00000438717.6:ENST00000618353.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	39	2	1.81685	2.24235	2.66785	0.0597868	0.0224639	0.189982	0.11692
chr7	127787186	127787286	3403762	0	+	0.38	(0.378,0.408]	chr7	318134	654	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000468166.5:ENST00000465900.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	39	2	1.81685	2.24235	2.66785	0.0597868	0.0224639	0.189982	0.11692
chr10	73013623	73013723	4647001	0	-	0.2	[0,0.28]	chr10	427482	22	INTRON	INTRON	P4HA1	ENSG00000122884.13	ENST00000394890.7:ENST00000307116.6:ENST00000373008.6:ENST00000440381.5:ENST00000263556.3:ENST00000464310.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	83	2	1.47169	2.24228	3.01287	0.0479607	0.0115634	0.171039	0.0889104
chr5	66071668	66071768	2372326	0	+	0.28	[0,0.28]	chr5	228612	1	SS3_PROX	SS3_PROX:INTRON	ERBIN	ENSG00000112851.15	ENST00000380943.6:ENST00000416865.6:ENST00000380935.5:ENST00000284037.10:ENST00000380938.6:ENST00000511297.5:ENST00000506030.5:ENST00000508515.1:ENST00000511671.5:ENST00000503913.5:ENST00000512354.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	54	2	1.84147	2.24228	2.64309	0.0610416	0.0308646	0.193277	0.13151
chr16	58553281	58553381	6495589	0	-	0.32	(0.28,0.32]	chr16	628523	1	SS5_PROX	SS5_PROX:INTRON	CNOT1	ENSG00000125107.19	ENST00000317147.10:ENST00000569240.5:ENST00000567188.5:ENST00000441024.6:ENST00000569732.1:ENST00000562046.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	58	2	2.02902	2.242235	2.45545	0.0438092	0.0174423	0.14901	0.11269
chr1	245993361	245993461	675564	0	-	0.3	(0.28,0.32]	chr1	79713	49	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000391836.3:ENST00000464398.1:ENST00000453676.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	67	2	1.40698	2.24221	3.07744	0.0778529	0.00604536	0.196685	0.0700813
chr7	44839806	44839904	3528599	0	-	0.520408	(0.515,0.57]	chr7	329111	38	INTRON	INTRON	H2AZ2	ENSG00000105968.19	ENST00000222690.10:ENST00000437072.5:ENST00000308153.9:ENST00000350771.7:ENST00000349299.7:ENST00000381124.9:ENST00000521529.5:ENST00000446531.1	protein_coding	protein_coding	protein_coding	protein_coding	9	86	2	1.9072	2.242165	2.57713	0.00558759	0.00176427	0.0678837	0.0376652
chr1	148923418	148923517	214986	0	+	0.464646	(0.44,0.476]	chr1	23784	78	INTRON	INTRON	PDE4DIP	ENSG00000178104.20	ENST00000695768.1:ENST00000695767.1:ENST00000695766.1:ENST00000530472.5:ENST00000695794.1:ENST00000524974.5:ENST00000585156.5:ENST00000695769.1:ENST00000618462.4:ENST00000695795.1:ENST00000617031.4:ENST00000617527.4:ENST00000533259.1:ENST00000619981.4:ENST00000617454.4:ENST00000613995.4:ENST00000621371.4:ENST00000534536.5:ENST00000528129.5:ENST00000369356.8:ENST00000533845.1:ENST00000526445.1:ENST00000369354.7:ENST00000369347.8:ENST00000369349.7:ENST00000369351.7:ENST00000612094.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	38	2	1.9039	2.242115	2.58033	0.0501498	0.0247511	0.156383	0.131869
chr10	34650677	34650776	4598646	0	-	0.474747	(0.44,0.476]	chr10	423718	1332	INTRON	INTRON	PARD3	ENSG00000148498.17	ENST00000545260.5:ENST00000545693.5:ENST00000346874.9:ENST00000350537.9:ENST00000374788.8:ENST00000374789.8:ENST00000374790.8:ENST00000374794.8:ENST00000696673.1:ENST00000374776.6:ENST00000340077.9:ENST00000374773.6	protein_coding	protein_coding	protein_coding	protein_coding	3	38	2	1.9039	2.242115	2.58033	0.0501498	0.0247511	0.156383	0.131869
chr16	30661433	30661533	6338513	0	+	0.47	(0.44,0.476]	chr16	607642	1	SS5_PROX	SS5_PROX:INTRON	FBRS	ENSG00000156860.16	ENST00000356166.11:ENST00000543786.5:ENST00000484152.1:ENST00000482749.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	38	2	1.9039	2.242115	2.58033	0.0501498	0.0247511	0.156383	0.131869
chr8	123349844	123349944	4042156	0	-	0.41	(0.408,0.44]	chr8	368720	4	SS3_PROX	SS3_PROX:INTRON	ATAD2	ENSG00000156802.13	ENST00000287394.10:ENST00000517666.5:ENST00000521903.5:ENST00000519124.5:ENST00000521496.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	58	2	1.58622	2.242085	2.89795	0.0291748	0.0110735	0.141552	0.0873897
chr19	45856006	45856106	7193793	0	-	0.46	(0.44,0.476]	chr19	728658	3	INTRON	INTRON	SYMPK	ENSG00000125755.19	ENST00000245934.12:ENST00000593504.5:ENST00000599460.5:ENST00000598896.5:ENST00000602061.5:ENST00000598059.5:ENST00000594293.5:ENST00000593959.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	48	2	1.90381	2.24207	2.58033	0.0260626	0.0247511	0.131869	0.122153
chr8	108220130	108220230	4022973	0	-	0.33	(0.32,0.35]	chr8	367636	3	SS3_PROX	SS3_PROX:INTRON	EIF3E	ENSG00000104408.11	ENST00000678042.1:ENST00000678773.1:ENST00000677409.1:ENST00000676892.1:ENST00000523674.2:ENST00000677674.1:ENST00000220849.10:ENST00000678937.1:ENST00000677084.1:ENST00000676706.1:ENST00000518100.6:ENST00000677040.1:ENST00000676698.1:ENST00000522352.6:ENST00000521297.2:ENST00000677501.1:ENST00000519030.6:ENST00000519627.2:ENST00000518345.2:ENST00000522445.6:ENST00000678334.1:ENST00000678023.1:ENST00000678797.1:ENST00000677614.1:ENST00000676642.1:ENST00000677965.1:ENST00000678901.1:ENST00000678243.1:ENST00000676663.1:ENST00000679198.1:ENST00000521614.6:ENST00000678004.1:ENST00000678881.1:ENST00000677590.1:ENST00000677272.1:ENST00000676530.1:ENST00000677696.1:ENST00000519517.5:ENST00000519413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	138	2	1.90543	2.242015	2.5786	0.00676396	0.0012954	0.0741642	0.0329737
chr12	54278913	54279011	5330887	0	-	0.326531	(0.32,0.35]	chr12	508638	4	EXON_LNCRNA	EXON_LNCRNA:INTRON	CBX5:ENSG00000289154	ENSG00000094916.16:ENSG00000289154.1	ENST00000209875.9:ENST00000618078.1:ENST00000692885.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA:processed_transcript	6	68	2	1.6868	2.2419350000000002	2.79707	0.0217601	0.0170923	0.123836	0.104099
chr11	76489720	76489820	4835952	0	+	0.51	(0.476,0.515]	chr11	451075	165	INTRON	INTRON	EMSY	ENSG00000158636.17	ENST00000427574.6:ENST00000695367.1:ENST00000334736.7:ENST00000524490.5:ENST00000533972.5:ENST00000525038.5:ENST00000524767.5:ENST00000525919.5:ENST00000533248.5:ENST00000529032.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	50	2	2.16377	2.2418899999999997	2.32001	0.0243026	0.0136217	0.12011	0.101682
chr1	235271146	235271246	663292	0	-	0.43	(0.408,0.44]	chr1	78552	100	INTRON	INTRON	ARID4B	ENSG00000054267.22	ENST00000349213.7:ENST00000366603.6:ENST00000264183.9:ENST00000421364.5:ENST00000491632.5:ENST00000418304.1:ENST00000466653.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	28	2	2.18807	2.241885	2.2957	0.0708044	0.0516458	0.184528	0.176696
chr10	92690747	92690847	4491339	0	+	0.44	(0.408,0.44]	chr10	413665	4	SS5_PROX	SS5_PROX:INTRON	HHEX	ENSG00000152804.11	ENST00000282728.10:ENST00000551454.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	28	2	2.18807	2.241885	2.2957	0.0708044	0.0516458	0.184528	0.176696
chr11	67227836	67227936	4813547	0	+	0.41	(0.408,0.44]	chr11	448163	4	SS3_PROX	SS3_PROX:INTRON	KDM2A	ENSG00000173120.15	ENST00000529006.7:ENST00000398645.6:ENST00000308783.9:ENST00000526258.5:ENST00000531696.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	28	2	2.18807	2.241885	2.2957	0.0708044	0.0516458	0.184528	0.176696
chr14	55154019	55154116	5900121	0	-	0.412371	(0.408,0.44]	chr14	560405	10	INTRON	INTRON	DLGAP5	ENSG00000126787.13	ENST00000395425.6:ENST00000247191.7	protein_coding	protein_coding	protein_coding	protein_coding	2	28	2	2.18807	2.241885	2.2957	0.0708044	0.0516458	0.184528	0.176696
chr16	19611898	19611998	6313617	0	+	0.43	(0.408,0.44]	chr16	604356	1	SS5_PROX	SS5_PROX:INTRON	VPS35L	ENSG00000103544.16	ENST00000251143.9:ENST00000438132.7:ENST00000542263.5:ENST00000417362.7:ENST00000513947.8:ENST00000543152.5:ENST00000535164.5:ENST00000539705.5:ENST00000541153.5:ENST00000538552.5:ENST00000540101.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	28	2	2.18807	2.241885	2.2957	0.0708044	0.0516458	0.184528	0.176696
chr17	72894468	72894568	6832966	0	-	0.43	(0.408,0.44]	chr17	675178	443	INTRON	INTRON	SLC39A11	ENSG00000133195.12	ENST00000255559.8:ENST00000542342.6:ENST00000582769.5:ENST00000579491.1:ENST00000584129.1:ENST00000579732.5:ENST00000580557.5:ENST00000583146.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	28	2	2.18807	2.241885	2.2957	0.0708044	0.0516458	0.184528	0.176696
chr19	57857308	57857404	7106110	0	+	0.427083	(0.408,0.44]	chr19	713238	7	INTRON	INTRON	ENSG00000268750:ZNF587	ENSG00000268750.7:ENSG00000198466.12	ENST00000596498.2:ENST00000593873.6:ENST00000603271.1:ENST00000598031.1:ENST00000604231.1:ENST00000339656.8:ENST00000423137.1:ENST00000419854.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	28	2	2.18807	2.241885	2.2957	0.0708044	0.0516458	0.184528	0.176696
chr3	33413624	33413723	1651442	0	-	0.434343	(0.408,0.44]	chr3	169382	4	INTRON	INTRON	UBP1	ENSG00000153560.12	ENST00000283629.8:ENST00000447368.6:ENST00000283628.9:ENST00000481761.1:ENST00000456378.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	28	2	2.18807	2.241885	2.2957	0.0708044	0.0516458	0.184528	0.176696
chr5	140563422	140563507	2738153	0	-	0.411765	(0.408,0.44]	chr5	257900	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	APBB3	ENSG00000113108.20	ENST00000357560.9:ENST00000358580.9:ENST00000510241.5:ENST00000509914.5:ENST00000354402.9:ENST00000356738.6:ENST00000467078.5:ENST00000511896.5:ENST00000412920.7:ENST00000511201.2:ENST00000506289.5:ENST00000513507.5:ENST00000505617.5:ENST00000506958.5:ENST00000503850.1:ENST00000511459.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	28	2	2.18807	2.241885	2.2957	0.0708044	0.0516458	0.184528	0.176696
chr6	147764844	147764944	2991647	0	+	0.42	(0.408,0.44]	chr6	280177	274	INTRON	INTRON	ENSG00000227681	ENSG00000227681.5	ENST00000427015.1	lncRNA	lncRNA	lncRNA	lncRNA	2	28	2	2.18807	2.241885	2.2957	0.0708044	0.0516458	0.184528	0.176696
chr6	158623707	158623807	3022245	0	+	0.42	(0.408,0.44]	chr6	281852	1	SS5_PROX	SS5_PROX:INTRON	TMEM181	ENSG00000146433.10	ENST00000367090.4:ENST00000684151.1	protein_coding	protein_coding	protein_coding	protein_coding	2	28	2	2.18807	2.241885	2.2957	0.0708044	0.0516458	0.184528	0.176696
chrX	113804299	113804399	7866082	0	-	0.43	(0.408,0.44]	chrX	801544	1881	EXON_LNCRNA	EXON_LNCRNA:INTRON	XACT	ENSG00000241743.4	ENST00000468762.3:ENST00000674361.1	lncRNA	lncRNA	lncRNA	lncRNA	2	28	2	2.18807	2.241885	2.2957	0.0708044	0.0516458	0.184528	0.176696
chr3	197123081	197123179	1901735	0	-	0.27551	[0,0.28]	chr3	190571	32	INTRON	INTRON	DLG1	ENSG00000075711.21	ENST00000667157.1:ENST00000346964.6:ENST00000656428.1:ENST00000663148.1:ENST00000655488.1:ENST00000357674.9:ENST00000671185.1:ENST00000658701.1:ENST00000667104.1:ENST00000661336.1:ENST00000669565.1:ENST00000670455.1:ENST00000656087.1:ENST00000670366.1:ENST00000653583.1:ENST00000653795.1:ENST00000671246.1:ENST00000661453.1:ENST00000665728.1:ENST00000664564.1:ENST00000653331.1:ENST00000660432.1:ENST00000660898.1:ENST00000657381.1:ENST00000659221.1:ENST00000654737.1:ENST00000669332.1:ENST00000659716.1:ENST00000660553.1:ENST00000664991.1:ENST00000419354.5:ENST00000661440.1:ENST00000667971.1:ENST00000670935.1:ENST00000668578.1:ENST00000666007.1:ENST00000661229.1:ENST00000660237.1:ENST00000657098.1:ENST00000661013.1:ENST00000436682.6:ENST00000452595.5:ENST00000662727.1:ENST00000422288.6:ENST00000448528.6:ENST00000443183.5:ENST00000656944.1:ENST00000392382.6:ENST00000450955.5:ENST00000658155.1:ENST00000669714.1:ENST00000654733.1:ENST00000469073.2:ENST00000419227.5:ENST00000392381.7:ENST00000471733.5:ENST00000419553.6:ENST00000447466.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	79	2	2.0412	2.24181	2.44242	0.0491024	0.0106194	0.155269	0.0914726
chr18	46097235	46097335	6965494	0	-	0.35	(0.32,0.35]	chr18	689416	17	INTRON	INTRON	ATP5F1A	ENSG00000152234.16	ENST00000398752.11:ENST00000282050.6:ENST00000593152.6:ENST00000586592.5:ENST00000590665.5:ENST00000590156.5:ENST00000592364.5:ENST00000589252.5:ENST00000589869.5:ENST00000590406.5:ENST00000590324.5:ENST00000590448.5:ENST00000592989.1:ENST00000591981.5:ENST00000585650.1:ENST00000591267.1:ENST00000588390.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	44	2	2.23182	2.2417749999999996	2.25173	0.068598	0.0180122	0.184298	0.114436
chr2	24526188	24526288	709606	0	+	0.35	(0.32,0.35]	chr2	82200	336	INTRON	INTRON	NCOA1	ENSG00000084676.16	ENST00000348332.8:ENST00000496333.5:ENST00000406961.5:ENST00000469850.5:ENST00000405141.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	44	2	2.23182	2.2417749999999996	2.25173	0.068598	0.0180122	0.184298	0.114436
chr2	61300750	61300850	1128819	0	-	0.35	(0.32,0.35]	chr2	121347	4	SS5_PROX	SS5_PROX:INTRON	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000472706.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	44	2	2.23182	2.2417749999999996	2.25173	0.068598	0.0180122	0.184298	0.114436
chr20	38038254	38038352	7268920	0	+	0.326531	(0.32,0.35]	chr20	738673	38	INTRON	INTRON	RPRD1B	ENSG00000101413.12	ENST00000462548.6:ENST00000373433.9:ENST00000495457.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	44	2	2.23182	2.2417749999999996	2.25173	0.068598	0.0180122	0.184298	0.114436
chr7	22589545	22589645	3499266	0	-	0.35	(0.32,0.35]	chr7	326644	164	INTRON	INTRON	STEAP1B	ENSG00000105889.16	ENST00000439708.1:ENST00000442252.1:ENST00000650428.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	44	2	2.23182	2.2417749999999996	2.25173	0.068598	0.0180122	0.184298	0.114436
chr11	64776406	64776497	4965286	0	-	0.32967	(0.32,0.35]	chr11	467540	5	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	SF1	ENSG00000168066.21	ENST00000334944.9:ENST00000227503.13:ENST00000377394.7:ENST00000448404.5:ENST00000377390.8:ENST00000377387.5:ENST00000681407.1:ENST00000433274.6:ENST00000633899.1:ENST00000413951.5:ENST00000432725.1:ENST00000482693.1:ENST00000463343.1:ENST00000472725.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	98	2	2.12121	2.24172	2.36223	0.00650424	0.00625472	0.0735144	0.0684171
chr3	170089870	170089969	1860893	0	-	0.383838	(0.378,0.408]	chr3	186581	24	UTR3	UTR3:EXON_MRNA:INTRON	PHC3	ENSG00000173889.16	ENST00000484068.5:ENST00000495893.7	protein_coding	protein_coding	protein_coding	protein_coding	12	129	2	1.86752	2.24171	2.6159	0.00322258	0.00194844	0.0524329	0.0400465
chr3	15054457	15054555	1619933	0	-	0.489796	(0.476,0.515]	chr3	167447	6	INTRON	INTRON	MRPS25	ENSG00000131368.9	ENST00000695375.1:ENST00000695376.1:ENST00000695377.1:ENST00000695378.1:ENST00000695379.1:ENST00000695380.1:ENST00000695381.1:ENST00000695382.1:ENST00000496484.2:ENST00000695334.1:ENST00000695384.1:ENST00000695322.1:ENST00000447299.2:ENST00000695383.1:ENST00000474866.2:ENST00000695385.1:ENST00000695386.1:ENST00000420267.6:ENST00000695387.1:ENST00000695388.1:ENST00000695389.1:ENST00000695390.1:ENST00000695391.1:ENST00000695392.1:ENST00000449354.7:ENST00000695393.1:ENST00000695394.1:ENST00000253686.7:ENST00000695395.1:ENST00000695323.1:ENST00000444840.6:ENST00000695396.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	13	149	2	2.01628	2.241705	2.46713	0.00249305	6.29989e-4	0.0446195	0.0226424
chr2	130132471	130132569	863597	0	+	0.336735	(0.32,0.35]	chr2	96903	23	INTRON	INTRON	MED15P9	ENSG00000223760.4	ENST00000427638.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	6	81	2	1.9182	2.2417	2.5652	0.0141462	0.00765724	0.103512	0.075364
chr12	68815427	68815527	5163046	0	+	0.42	(0.408,0.44]	chr12	488888	4	SS3_PROX	SS3_PROX:INTRON	MDM2	ENSG00000135679.27	ENST00000258149.11:ENST00000393412.7:ENST00000311420.13:ENST00000493419.1:ENST00000393417.8:ENST00000258148.11:ENST00000539479.6:ENST00000523991.5:ENST00000543323.5:ENST00000393415.7:ENST00000393416.7:ENST00000481186.6:ENST00000545204.2:ENST00000544561.6:ENST00000665020.1:ENST00000666617.1:ENST00000671567.1:ENST00000393410.5:ENST00000496959.5:ENST00000299252.8:ENST00000360430.6:ENST00000517852.5:ENST00000546048.5:ENST00000540352.5:ENST00000542502.5:ENST00000537182.5:ENST00000536089.5:ENST00000393413.7:ENST00000350057.9:ENST00000348801.7:ENST00000478070.2:ENST00000471946.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	61	2	1.78881	2.24169	2.69457	0.0370259	0.00331036	0.139194	0.0527031
chr6	17678157	17678257	3065925	0	-	0.53	(0.515,0.57]	chr6	284866	20	INTRON	INTRON	NUP153	ENSG00000124789.12	ENST00000613258.4:ENST00000537253.5:ENST00000262077.3	protein_coding	protein_coding	protein_coding	protein_coding	5	52	2	1.94493	2.24169	2.53845	0.0204583	0.00632226	0.122204	0.0687526
chr1	86924595	86924695	153692	0	+	0.6	(0.57,1]	chr1	16952	84	INTRON	INTRON	HS2ST1	ENSG00000153936.18	ENST00000370550.10:ENST00000370551.8:ENST00000687893.1:ENST00000693745.1:ENST00000689904.1:ENST00000690674.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	33	2	1.67986	2.241685	2.80351	0.0496395	0.00172505	0.174685	0.0374701
chr7	105281647	105281746	3602829	0	-	0.282828	(0.28,0.32]	chr7	336144	124	INTRON	INTRON	SRPK2	ENSG00000135250.17	ENST00000393651.8:ENST00000489828.5:ENST00000482897.5:ENST00000460391.5:ENST00000462282.5:ENST00000465112.5:ENST00000482862.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	107	2	1.78733	2.241675	2.69602	0.0276087	0.00126382	0.123904	0.0329641
chr1	71065237	71065322	482860	0	-	0.294118	(0.28,0.32]	chr1	57840	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ZRANB2	ENSG00000132485.14	ENST00000370920.8:ENST00000477096.1:ENST00000254821.10:ENST00000487510.1:ENST00000479947.1:ENST00000473260.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	64	2	2.05458	2.24163	2.42868	0.0381508	0.0105331	0.141764	0.0908969
chr11	124998703	124998802	4881988	0	+	0.393939	(0.378,0.408]	chr11	456301	51	INTRON	INTRON	CCDC15	ENSG00000149548.15	ENST00000529051.5:ENST00000344762.6	protein_coding	protein_coding	protein_coding	protein_coding	5	63	2	2.04622	2.241395	2.43657	0.0149927	0.0106733	0.107704	0.0861859
chr7	121173834	121173934	3395507	0	+	0.39	(0.378,0.408]	chr7	317781	238	INTRON	INTRON	CPED1	ENSG00000106034.18	ENST00000310396.10:ENST00000450913.6:ENST00000423795.5:ENST00000466055.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	15	181	2	1.99907	2.24129	2.48351	0.00303194	2.12108e-4	0.0493883	0.0127597
chr3	49969921	49970018	1423256	0	+	0.463918	(0.44,0.476]	chr3	149972	8	INTRON	INTRON	RBM6	ENSG00000004534.15	ENST00000442092.5:ENST00000443081.5:ENST00000419610.5:ENST00000441115.5:ENST00000422955.5:ENST00000454079.5:ENST00000266022.9:ENST00000425608.5:ENST00000434592.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	38	2	2.20949	2.2412650000000003	2.27304	0.0672585	0.0158915	0.183051	0.109464
chr4	24544806	24544905	2118609	0	-	0.444444	(0.44,0.476]	chr4	209224	14	INTRON	INTRON	DHX15	ENSG00000109606.13	ENST00000336812.5	protein_coding	protein_coding	protein_coding	protein_coding	3	38	2	2.20949	2.2412650000000003	2.27304	0.0672585	0.0158915	0.183051	0.109464
chr14	31010849	31010949	5857718	0	-	0.49	(0.476,0.515]	chr14	556508	465	INTRON	INTRON	STRN3	ENSG00000196792.12	ENST00000355683.9:ENST00000357479.10:ENST00000555358.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	90	2	1.45223	2.24125	3.03027	0.0284116	9.53446e-4	0.138377	0.0282335
chr12	68816120	68816220	5163053	0	+	0.35	(0.32,0.35]	chr12	488892	4	SS5_PROX	SS5_PROX:INTRON	MDM2	ENSG00000135679.27	ENST00000258149.11:ENST00000393412.7:ENST00000311420.13:ENST00000493419.1:ENST00000393417.8:ENST00000258148.11:ENST00000539479.6:ENST00000523991.5:ENST00000543323.5:ENST00000393415.7:ENST00000393416.7:ENST00000481186.6:ENST00000545204.2:ENST00000544561.6:ENST00000665020.1:ENST00000666617.1:ENST00000671567.1:ENST00000393410.5:ENST00000496959.5:ENST00000299252.8:ENST00000360430.6:ENST00000517852.5:ENST00000546048.5:ENST00000540352.5:ENST00000542502.5:ENST00000537182.5:ENST00000536089.5:ENST00000393413.7:ENST00000350057.9:ENST00000348801.7:ENST00000478070.2:ENST00000471946.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	71	2	1.73318	2.24124	2.7493	0.0462868	0.00296357	0.150684	0.0500135
chr2	32458126	32458226	731813	0	+	0.35	(0.32,0.35]	chr2	84399	38	INTRON	INTRON	BIRC6	ENSG00000115760.15	ENST00000421745.7:ENST00000648282.1	protein_coding	protein_coding	protein_coding	protein_coding	5	71	2	1.73318	2.24124	2.7493	0.0462868	0.00296357	0.150684	0.0500135
chr19	45682828	45682927	7080591	0	+	0.535354	(0.515,0.57]	chr19	708349	10	UTR3	UTR3:EXON_MRNA	GIPR	ENSG00000010310.9	ENST00000590918.6:ENST00000652180.1	protein_coding	protein_coding	protein_coding	protein_coding	4	41	2	1.91916	2.24111	2.56306	0.0247751	0.0231902	0.131869	0.118148
chr19	49668054	49668153	7090341	0	+	0.474747	(0.44,0.476]	chr19	710120	5	INTRON	INTRON	BCL2L12	ENSG00000126453.10	ENST00000611631.4:ENST00000614495.4:ENST00000616144.4:ENST00000619007.4:ENST00000246785.7:ENST00000441864.6:ENST00000246784.8:ENST00000594157.5:ENST00000598979.5:ENST00000600947.5:ENST00000598306.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	60	2	1.45853	2.241095	3.02366	0.0470887	0.00603307	0.152251	0.0700813
chr1	2262846	2262945	2512	0	+	0.363636	(0.35,0.378]	chr1	557	144	INTRON	INTRON	SKI	ENSG00000157933.10	ENST00000378536.5:ENST00000508416.1:ENST00000478223.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	66	2	2.11531	2.24104	2.36677	0.0139343	0.0119629	0.0962115	0.0957526
chr1	224005363	224005459	321052	0	+	0.34375	(0.32,0.35]	chr1	36983	7	INTRON	INTRON	SEPTIN7P13	ENSG00000185495.10	ENST00000449219.2:ENST00000572124.2	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript	5	71	2	2.18092	2.24101	2.3011	0.0256608	0.00617969	0.120491	0.0713552
chr11	47550696	47550796	4950379	0	-	0.29	(0.28,0.32]	chr11	464246	261	INTRON	INTRON	CELF1	ENSG00000149187.19	ENST00000310513.10:ENST00000687097.1:ENST00000531165.5:ENST00000530151.5:ENST00000525841.5:ENST00000526419.1	protein_coding	protein_coding	protein_coding	protein_coding	4	64	2	2.00989	2.240995	2.4721	0.0427801	0.00906617	0.148082	0.0854289
chr12	123758815	123758913	5244576	0	+	0.316327	(0.28,0.32]	chr12	498660	9	UTR3	UTR3:EXON_MRNA	ATP6V0A2	ENSG00000185344.15	ENST00000330342.8	protein_coding	protein_coding	protein_coding	protein_coding	4	64	2	2.09794	2.240925	2.38391	0.0340483	0.0122525	0.134863	0.0969406
chrX	73961936	73962034	7682276	0	+	0.316327	(0.28,0.32]	chrX	786628	30	INTRON	INTRON	JPX	ENSG00000225470.8	ENST00000664637.1:ENST00000639185.1:ENST00000655090.1:ENST00000640437.1:ENST00000660546.1:ENST00000667886.1:ENST00000660840.1:ENST00000657179.1:ENST00000670506.1:ENST00000657910.1:ENST00000662120.1:ENST00000671207.1:ENST00000659254.1:ENST00000656624.1:ENST00000667573.1:ENST00000660856.1:ENST00000660836.1:ENST00000668590.1:ENST00000658649.1:ENST00000414209.6:ENST00000654137.1:ENST00000670994.1:ENST00000653479.1:ENST00000602772.5:ENST00000655879.1:ENST00000657372.1:ENST00000657096.1:ENST00000602985.6:ENST00000670685.1:ENST00000670503.1:ENST00000663027.1:ENST00000654995.1:ENST00000602895.6:ENST00000654374.1:ENST00000660087.1:ENST00000665032.1:ENST00000671336.1:ENST00000671476.1:ENST00000667057.1:ENST00000670192.1:ENST00000670464.1:ENST00000665345.1:ENST00000661546.1:ENST00000662543.1:ENST00000602938.6:ENST00000664295.1:ENST00000654005.1:ENST00000669149.1:ENST00000659852.1:ENST00000656509.1:ENST00000602294.6:ENST00000667294.1:ENST00000663470.1:ENST00000602920.6:ENST00000671021.1:ENST00000659849.1:ENST00000667937.1:ENST00000661130.1:ENST00000654196.1:ENST00000655994.1:ENST00000659373.1:ENST00000662239.1:ENST00000670805.1:ENST00000656263.1:ENST00000653069.1:ENST00000657638.1:ENST00000653808.1:ENST00000653929.1:ENST00000653885.1:ENST00000659023.1:ENST00000602546.5:ENST00000659622.1:ENST00000671518.1:ENST00000670408.1	lncRNA	lncRNA	lncRNA	lncRNA	4	64	2	2.09794	2.240925	2.38391	0.0340483	0.0122525	0.134863	0.0969406
chr7	111375173	111375273	3622234	0	-	0.38	(0.378,0.408]	chr7	337093	4113	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	87	2	1.9808	2.240895	2.50099	0.0123757	0.00245021	0.0916369	0.0457892
chr6	3000667	3000767	2787854	0	+	0.49	(0.476,0.515]	chr6	263215	3	SS5_PROX	SS5_PROX:INTRON	NQO2	ENSG00000124588.22	ENST00000426637.5:ENST00000380472.7:ENST00000380455.11:ENST00000397717.7:ENST00000338130.7:ENST00000380441.5:ENST00000380454.8:ENST00000380430.6	protein_coding	protein_coding	protein_coding	protein_coding	13	150	2	2.20314	2.2408599999999996	2.27858	0.00191826	6.66657e-4	0.0395832	0.0233952
chr1	77979819	77979919	148572	0	+	0.33	(0.32,0.35]	chr1	16564	2	SS5_PROX	SS5_PROX:INTRON	DNAJB4	ENSG00000162616.9	ENST00000487931.1:ENST00000477671.2:ENST00000484662.1	protein_coding	processed_transcript	protein_coding	processed_transcript	5	71	2	2.02133	2.2408	2.46027	0.017146	0.0108973	0.111072	0.0873034
chr1	61154326	61154426	128115	0	+	0.53	(0.515,0.57]	chr1	14778	214	INTRON	INTRON	NFIA	ENSG00000162599.17	ENST00000371191.5:ENST00000664495.1:ENST00000476646.5:ENST00000407417.7:ENST00000479364.1:ENST00000371189.8:ENST00000670151.1:ENST00000664149.1:ENST00000662015.1:ENST00000403491.8:ENST00000371187.7:ENST00000485903.6:ENST00000371185.6:ENST00000371184.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	54	2	1.67758	2.24079	2.804	0.0471728	0.00215855	0.168737	0.0417866
chr5	54070133	54070233	2618507	0	-	0.52	(0.515,0.57]	chr5	248837	220	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	54	2	1.67758	2.24079	2.804	0.0471728	0.00215855	0.168737	0.0417866
chr2	61502742	61502810	1130860	0	-	0.235294	[0,0.28]	chr2	121596	3	SS3_PROX	SS3_PROX:INTRON	XPO1	ENSG00000082898.19	ENST00000677110.1:ENST00000676553.1:ENST00000677556.1:ENST00000677814.1:ENST00000676771.1:ENST00000677803.1:ENST00000677239.1:ENST00000678790.1:ENST00000677928.1:ENST00000678182.1:ENST00000677150.1:ENST00000678172.1:ENST00000678360.1:ENST00000678081.1:ENST00000676889.1:ENST00000676783.1:ENST00000679035.1:ENST00000677422.1:ENST00000677417.1:ENST00000677813.1:ENST00000676999.1:ENST00000676667.1:ENST00000678263.1:ENST00000678877.1:ENST00000677933.1:ENST00000680228.1:ENST00000677289.1:ENST00000677190.1:ENST00000401558.7:ENST00000428210.5:ENST00000677290.1:ENST00000677850.1:ENST00000451765.6:ENST00000676789.1:ENST00000678741.1:ENST00000404992.6:ENST00000406957.5:ENST00000443240.5:ENST00000476585.5:ENST00000468259.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	89	2	2.1357	2.24078	2.34586	0.0338175	0.00631808	0.134476	0.0722266
chr12	57372262	57372362	5338670	0	-	0.43	(0.408,0.44]	chr12	510710	309	INTRON	INTRON	R3HDM2	ENSG00000179912.21	ENST00000402412.6:ENST00000347140.7:ENST00000634871.1:ENST00000448732.1	protein_coding	protein_coding	protein_coding	protein_coding	3	38	2	1.81572	2.240755	2.66579	0.0626779	0.019342	0.175915	0.119831
chr19	11107515	11107614	7017005	0	+	0.585859	(0.57,1]	chr19	697450	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	LDLR	ENSG00000130164.14	ENST00000557933.5:ENST00000558518.6:ENST00000545707.5:ENST00000535915.5:ENST00000455727.6:ENST00000558013.5:ENST00000252444.9:ENST00000560467.1	protein_coding	protein_coding	protein_coding	protein_coding	5	32	2	2.23711	2.240725	2.24434	0.0172108	0.00677343	0.104099	0.074225
chrX	110316998	110317098	7862945	0	-	0.44	(0.408,0.44]	chrX	801523	71	INTRON	INTRON	AMMECR1	ENSG00000101935.12	ENST00000686065.1:ENST00000262844.10:ENST00000372059.6:ENST00000372057.1:ENST00000680410.1:ENST00000473662.1:ENST00000496695.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	51	2	1.88062	2.24055	2.60048	0.0534548	0.00484324	0.162935	0.0640618
chr1	30954880	30954980	411767	0	-	0.38	(0.378,0.408]	chr1	49653	5	INTRON	INTRON	PUM1	ENSG00000134644.16	ENST00000426105.7:ENST00000373747.7:ENST00000257075.9:ENST00000424085.6:ENST00000525843.5:ENST00000440538.6:ENST00000498419.5:ENST00000373741.8:ENST00000373742.6:ENST00000527498.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	94	2	1.64762	2.24053	2.83344	0.0136375	0.00244811	0.101785	0.0445777
chr15	58734480	58734580	6193363	0	-	0.46	(0.44,0.476]	chr15	589988	164	INTRON	INTRON	ADAM10	ENSG00000137845.15	ENST00000260408.8:ENST00000402627.5:ENST00000561288.1:ENST00000559053.1:ENST00000558733.5:ENST00000439637.5:ENST00000497846.5:ENST00000558004.1:ENST00000560608.5:ENST00000561149.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	45	2	1.87325	2.240495	2.60774	0.0265709	0.0255874	0.134088	0.120269
chr1	51401453	51401549	453157	0	-	0.28125	(0.28,0.32]	chr1	54335	1	INTRON	INTRON	EPS15	ENSG00000085832.17	ENST00000371733.8:ENST00000371730.6:ENST00000486505.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	130	2	1.59462	2.240485	2.88635	0.0287963	5.14339e-4	0.127208	0.0203753
chr1	30969190	30969289	411917	0	-	0.555556	(0.515,0.57]	chr1	49679	3	INTRON	INTRON	PUM1	ENSG00000134644.16	ENST00000426105.7:ENST00000373747.7:ENST00000257075.9:ENST00000424085.6:ENST00000525843.5:ENST00000440538.6:ENST00000498419.5:ENST00000373741.8:ENST00000373742.6:ENST00000471894.1:ENST00000490546.1:ENST00000532678.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	24	2	2.12971	2.24048	2.35125	0.0757903	0.0436431	0.194427	0.162255
chr1	150407905	150408005	222134	0	+	0.54	(0.515,0.57]	chr1	25051	426	INTRON	INTRON	RPRD2	ENSG00000163125.16	ENST00000492220.1:ENST00000369068.5:ENST00000401000.8:ENST00000369067.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	24	2	2.12971	2.24048	2.35125	0.0757903	0.0436431	0.194427	0.162255
chr10	5715883	5715981	4384659	0	+	0.520408	(0.515,0.57]	chr10	404489	13	INTRON	INTRON	TASOR2	ENSG00000108021.21	ENST00000695832.1:ENST00000328090.9:ENST00000695737.1:ENST00000695833.1:ENST00000695834.1:ENST00000695835.1:ENST00000695836.1:ENST00000496681.5:ENST00000480839.6:ENST00000645567.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	24	2	2.12971	2.24048	2.35125	0.0757903	0.0436431	0.194427	0.162255
chr10	47533581	47533680	4609279	0	-	0.525253	(0.515,0.57]	chr10	424641	97	INTRON	INTRON	ENSG00000254929	ENSG00000254929.6	ENST00000605970.5:ENST00000431840.2	lncRNA	lncRNA	lncRNA	lncRNA	2	24	2	2.12971	2.24048	2.35125	0.0757903	0.0436431	0.194427	0.162255
chr11	14336000	14336100	4917440	0	-	0.57	(0.515,0.57]	chr11	460800	273	INTRON	INTRON	RRAS2	ENSG00000133818.14	ENST00000256196.9:ENST00000537760.5:ENST00000529237.5:ENST00000534746.5:ENST00000526063.5:ENST00000532814.5:ENST00000531807.5:ENST00000532950.5:ENST00000531421.5:ENST00000526717.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	24	2	2.12971	2.24048	2.35125	0.0757903	0.0436431	0.194427	0.162255
chr11	108299413	108299513	4857887	0	+	0.53	(0.515,0.57]	chr11	453239	3	SS3_PROX	SS3_PROX:INTRON	ATM	ENSG00000149311.20	ENST00000675843.1:ENST00000683174.1:ENST00000527805.6:ENST00000675595.1:ENST00000452508.6:ENST00000278616.9:ENST00000524792.5:ENST00000683524.1:ENST00000684152.1:ENST00000533690.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	24	2	2.12971	2.24048	2.35125	0.0757903	0.0436431	0.194427	0.162255
chr14	102165107	102165207	5821535	0	+	0.55	(0.515,0.57]	chr14	552337	74	INTRON	INTRON	WDR20	ENSG00000140153.18	ENST00000557485.5:ENST00000335263.9:ENST00000424963.6:ENST00000322340.9:ENST00000556807.1:ENST00000555879.5:ENST00000561154.1:ENST00000342702.8:ENST00000558567.5:ENST00000299135.6:ENST00000454394.2:ENST00000556094.1:ENST00000556511.2:ENST00000557186.5:ENST00000558854.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	24	2	2.12971	2.24048	2.35125	0.0757903	0.0436431	0.194427	0.162255
chr18	9501705	9501805	6871396	0	+	0.53	(0.515,0.57]	chr18	680716	219	INTRON	INTRON	RALBP1	ENSG00000017797.13	ENST00000019317.8:ENST00000585015.6:ENST00000383432.8:ENST00000609094.2:ENST00000458039.3:ENST00000577221.1	protein_coding	protein_coding	protein_coding	protein_coding	2	24	2	2.12971	2.24048	2.35125	0.0757903	0.0436431	0.194427	0.162255
chr19	10222010	10222107	7135159	0	-	0.515464	(0.515,0.57]	chr19	719288	7	UTR3	UTR3:EXON_MRNA:INTRON	DNMT1:S1PR2	ENSG00000130816.17:ENSG00000267534.4	ENST00000588952.5:ENST00000592342.5:ENST00000646641.1	protein_coding	protein_coding	protein_coding	protein_coding	2	24	2	2.12971	2.24048	2.35125	0.0757903	0.0436431	0.194427	0.162255
chr19	54445360	54445437	7211740	0	-	0.519481	(0.515,0.57]	chr19	732153	2	EXON_LNCRNA	EXON_LNCRNA:SS3_PROX:INTRON	LENG8-AS1	ENSG00000226696.7	ENST00000652740.1:ENST00000429922.5:ENST00000416022.1	lncRNA	lncRNA	lncRNA	lncRNA	2	24	2	2.12971	2.24048	2.35125	0.0757903	0.0436431	0.194427	0.162255
chr2	235542834	235542934	1041825	0	+	0.56	(0.515,0.57]	chr2	111222	179	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1:ENST00000402604.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	24	2	2.12971	2.24048	2.35125	0.0757903	0.0436431	0.194427	0.162255
chr5	54172927	54173027	2619541	0	-	0.53	(0.515,0.57]	chr5	248860	6	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2:ENST00000505630.5:ENST00000505383.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	24	2	2.12971	2.24048	2.35125	0.0757903	0.0436431	0.194427	0.162255
chr5	54309994	54310094	2620914	0	-	0.52	(0.515,0.57]	chr5	248869	3	SS5_PROX	SS5_PROX:INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2:ENST00000505630.5:ENST00000505383.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	24	2	2.12971	2.24048	2.35125	0.0757903	0.0436431	0.194427	0.162255
chr6	47520517	47520617	2873993	0	+	0.55	(0.515,0.57]	chr6	272731	167	INTRON	INTRON	CD2AP	ENSG00000198087.7	ENST00000359314.5	protein_coding	protein_coding	protein_coding	protein_coding	2	24	2	2.12971	2.24048	2.35125	0.0757903	0.0436431	0.194427	0.162255
chr7	101928661	101928761	3367479	0	+	0.56	(0.515,0.57]	chr7	315225	121	INTRON	INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000497815.5:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000558469.5:ENST00000560541.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	24	2	2.12971	2.24048	2.35125	0.0757903	0.0436431	0.194427	0.162255
chr8	58423436	58423536	3757195	0	+	0.54	(0.515,0.57]	chr8	349389	61	INTRON	INTRON	UBXN2B	ENSG00000215114.10	ENST00000522978.1:ENST00000399598.7:ENST00000523409.5:ENST00000520732.5:ENST00000521796.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	24	2	2.12971	2.24048	2.35125	0.0757903	0.0436431	0.194427	0.162255
chr9	112130929	112131029	4316333	0	-	0.52	(0.515,0.57]	chr9	396964	61	INTRON	INTRON	SUSD1	ENSG00000106868.17	ENST00000374270.8:ENST00000374263.7:ENST00000355396.7:ENST00000374264.6:ENST00000415074.1:ENST00000532348.1:ENST00000482851.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	24	2	2.12971	2.24048	2.35125	0.0757903	0.0436431	0.194427	0.162255
chr16	29609712	29609812	6471698	0	-	0.52	(0.515,0.57]	chr16	625301	149	INTRON	INTRON	ENSG00000288632	ENSG00000288632.1	ENST00000675579.1	lncRNA	lncRNA	lncRNA	lncRNA	4	42	2	2.01978	2.24041	2.46104	0.032841	0.0165522	0.145164	0.102621
chr12	106959983	106960082	5218549	0	+	0.393939	(0.378,0.408]	chr12	493944	2	INTRON	INTRON	TMEM263	ENSG00000151135.10	ENST00000548125.5:ENST00000547242.5:ENST00000551489.5:ENST00000550344.5:ENST00000280756.9:ENST00000547081.1	protein_coding	protein_coding	protein_coding	protein_coding	5	63	2	1.82258	2.240365	2.65815	0.0341279	0.00391167	0.135102	0.0569957
chr3	15229559	15229654	1373107	0	+	0.389474	(0.378,0.408]	chr3	144753	1	INTRON	INTRON	CAPN7	ENSG00000131375.10	ENST00000253693.7:ENST00000415565.1	protein_coding	protein_coding	protein_coding	protein_coding	5	63	2	1.82258	2.240365	2.65815	0.0341279	0.00391167	0.135102	0.0569957
chr6	147717451	147717550	2991171	0	+	0.454545	(0.44,0.476]	chr6	280167	246	INTRON	INTRON	ENSG00000227681	ENSG00000227681.5	ENST00000427015.1:ENST00000432506.5:ENST00000442094.5:ENST00000434985.1	lncRNA	lncRNA	lncRNA	lncRNA	6	57	2	1.35267	2.24033	3.12799	0.060678	0.0050635	0.192323	0.0621733
chr16	85670101	85670199	6416557	0	+	0.367347	(0.35,0.378]	chr16	615554	13	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000405402.6:ENST00000253458.12:ENST00000393243.5:ENST00000412692.5:ENST00000469381.1:ENST00000438180.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	41	2	1.75561	2.2402949999999997	2.72498	0.0739399	0.0168499	0.190914	0.11068
chr14	35025045	35025143	5691478	0	+	0.265306	[0,0.28]	chr14	541316	16	INTRON	INTRON	SRP54	ENSG00000100883.13	ENST00000556994.5:ENST00000678836.1:ENST00000546080.6:ENST00000555746.6:ENST00000678963.1:ENST00000678477.1:ENST00000677621.1:ENST00000678519.1:ENST00000678627.1:ENST00000216774.11:ENST00000555557.5:ENST00000678274.1:ENST00000677647.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	107	2	2.02265	2.240265	2.45788	0.0449017	0.00202916	0.149888	0.0417095
chr1	1741189	1741287	361392	0	-	0.418367	(0.408,0.44]	chr1	42138	11	INTRON	INTRON	SLC35E2A	ENSG00000215790.8	ENST00000647043.1:ENST00000246421.4	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	4	51	2	2.21238	2.24015	2.26792	0.0193525	0.0179973	0.119831	0.106756
chr22	20555845	20555944	7479850	0	+	0.464646	(0.44,0.476]	chr22	763003	3	INTRON	INTRON	MED15	ENSG00000099917.17	ENST00000444094.5:ENST00000414658.5:ENST00000433831.5:ENST00000432052.5:ENST00000292733.11:ENST00000263205.11:ENST00000477824.5:ENST00000406969.5:ENST00000382974.6:ENST00000441501.5:ENST00000473028.5:ENST00000457322.5:ENST00000428629.5:ENST00000424287.5:ENST00000423862.5:ENST00000487550.5:ENST00000476767.5:ENST00000492381.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	12	139	2	1.99961	2.2401400000000002	2.48067	0.0036117	5.78772e-4	0.0533855	0.0218339
chr16	23911443	23911543	6324515	0	+	0.44	(0.408,0.44]	chr16	605701	177	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000498739.1	protein_coding	protein_coding	protein_coding	protein_coding	9	107	2	2.11768	2.2401	2.36252	0.00352982	0.00260554	0.0546236	0.0455058
chr7	130087898	130087998	3413768	0	+	0.5	(0.476,0.515]	chr7	319098	167	INTRON	INTRON	KLHDC10	ENSG00000128607.14	ENST00000335420.10:ENST00000463413.1:ENST00000468226.1	protein_coding	protein_coding	protein_coding	protein_coding	10	108	2	1.75592	2.240065	2.72421	0.00862128	0.00107964	0.0838846	0.0302522
chr3	36986331	36986431	1655292	0	-	0.32	(0.28,0.32]	chr3	169856	14	UTR3	UTR3:EXON_MRNA	EPM2AIP1	ENSG00000178567.8	ENST00000322716.8	protein_coding	protein_coding	protein_coding	protein_coding	15	220	2	2.09156	2.24004	2.38852	0.00140513	0.00139898	0.0343919	0.0340865
chr14	20470969	20471069	5655963	0	+	0.37	(0.35,0.378]	chr14	539160	3	SS5_PROX	SS5_PROX:INTRON	PNP	ENSG00000198805.12	ENST00000553418.5:ENST00000361505.10:ENST00000557229.5:ENST00000556293.5:ENST00000554056.5:ENST00000553591.1:ENST00000554065.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	117	2	1.46325	2.239925	3.0166	0.0346125	3.3606e-4	0.148144	0.0170343
chr10	5457484	5457583	4384323	0	+	0.30303	(0.28,0.32]	chr10	404451	6	UTR3	UTR3:EXON_MRNA	NET1	ENSG00000173848.19	ENST00000355029.9:ENST00000380359.3	protein_coding	protein_coding	protein_coding	protein_coding	3	47	2	2.0243	2.239875	2.45545	0.0438092	0.0364967	0.153759	0.14901
chr17	29395589	29395688	6585687	0	+	0.313131	(0.28,0.32]	chr17	640373	42	INTRON	INTRON	ENSG00000266111:TAOK1	ENSG00000266111.2:ENSG00000160551.12	ENST00000584958.2:ENST00000261716.8:ENST00000583121.5:ENST00000587277.1:ENST00000536202.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	3	47	2	2.0243	2.239875	2.45545	0.0438092	0.0364967	0.153759	0.14901
chr3	141910761	141910860	1526420	0	+	0.313131	(0.28,0.32]	chr3	159025	31	INTRON	INTRON	ATP1B3	ENSG00000069849.11	ENST00000475483.5:ENST00000465172.5:ENST00000286371.8:ENST00000466678.5:ENST00000462082.1:ENST00000495216.1:ENST00000482635.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	47	2	2.0243	2.239875	2.45545	0.0438092	0.0364967	0.153759	0.14901
chr5	131524016	131524116	2718053	0	-	0.29	(0.28,0.32]	chr5	255585	21	INTRON	INTRON	RAPGEF6	ENSG00000158987.22	ENST00000509018.6:ENST00000507093.5:ENST00000296859.10:ENST00000627212.2:ENST00000308008.10:ENST00000515170.5:ENST00000510071.5:ENST00000514179.5:ENST00000513227.5:ENST00000504575.5:ENST00000504039.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	47	2	2.0243	2.239875	2.45545	0.0438092	0.0364967	0.153759	0.14901
chr6	47478648	47478748	2873571	0	+	0.32	(0.28,0.32]	chr6	272722	4	SS5_PROX	SS5_PROX:INTRON	CD2AP	ENSG00000198087.7	ENST00000359314.5	protein_coding	protein_coding	protein_coding	protein_coding	3	47	2	2.0243	2.239875	2.45545	0.0438092	0.0364967	0.153759	0.14901
chr1	224125578	224125678	321223	0	+	0.32	(0.28,0.32]	chr1	36996	108	INTRON	INTRON	FBXO28	ENSG00000143756.12	ENST00000366862.10:ENST00000424254.6:ENST00000523990.1:ENST00000483773.1:ENST00000519894.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	65	2	1.51776	2.239815	2.96187	0.0528371	0.0114995	0.178899	0.0889104
chr5	160115906	160116006	2759765	0	-	0.32	(0.28,0.32]	chr5	260442	69	INTRON	INTRON	PWWP2A	ENSG00000170234.13	ENST00000456329.7:ENST00000523662.1:ENST00000307063.9:ENST00000520662.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	47	2	1.96475	2.239815	2.51488	0.0428385	0.0380957	0.162255	0.141678
chr1	193026398	193026495	612533	0	-	0.319588	(0.28,0.32]	chr1	72454	21	INTRON	INTRON	UCHL5	ENSG00000116750.14	ENST00000367455.8:ENST00000367454.6:ENST00000420791.5:ENST00000367450.7:ENST00000367451.8:ENST00000367449.5:ENST00000367448.5:ENST00000443327.5:ENST00000421683.1	protein_coding	protein_coding	protein_coding	protein_coding	7	99	2	1.63236	2.23975	2.84714	0.0273014	0.00310758	0.136494	0.0498063
chr4	70821361	70821458	2155628	0	-	0.371134	(0.35,0.378]	chr4	212358	1	INTRON	INTRON	GRSF1	ENSG00000132463.15	ENST00000254799.11:ENST00000505068.5:ENST00000499044.6:ENST00000502323.5:ENST00000514161.5:ENST00000506453.1:ENST00000508091.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	49	2	1.87586	2.239635	2.60341	0.0275785	0.0268864	0.135275	0.123904
chr7	107101074	107101174	3377732	0	+	0.3	(0.28,0.32]	chr7	316252	88	INTRON	INTRON	PRKAR2B	ENSG00000005249.13	ENST00000265717.5:ENST00000393613.6:ENST00000488792.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	80	2	1.91611	2.23951	2.56291	0.0539102	0.00227849	0.164153	0.0437013
chr6	89801143	89801242	3161852	0	-	0.555556	(0.515,0.57]	chr6	294880	60	INTRON	INTRON	MDN1	ENSG00000112159.12	ENST00000369393.8:ENST00000629399.2:ENST00000439638.1	protein_coding	protein_coding	protein_coding	protein_coding	4	43	2	2.08547	2.23949	2.39351	0.0289426	0.0100431	0.1274	0.0881096
chr17	31953074	31953173	6595838	0	+	0.323232	(0.32,0.35]	chr17	641554	50	INTRON	INTRON	SUZ12	ENSG00000178691.11	ENST00000322652.10:ENST00000580398.1	protein_coding	protein_coding	protein_coding	protein_coding	5	60	2	1.68188	2.239475	2.79707	0.031521	0.0170923	0.144381	0.104099
chrX	153761212	153761311	7911309	0	-	0.313131	(0.28,0.32]	chrX	805126	2	INTRON	INTRON	PLXNB3-AS1	ENSG00000232725.1	ENST00000434284.1:ENST00000416854.1	lncRNA	lncRNA	lncRNA	lncRNA	3	50	2	2.09794	2.2394749999999997	2.38101	0.0456017	0.0340483	0.164236	0.134863
chr2	169625489	169625588	906894	0	+	0.353535	(0.35,0.378]	chr2	100061	104	INTRON	INTRON	PPIG	ENSG00000138398.17	ENST00000678088.1:ENST00000677392.1:ENST00000433207.6:ENST00000679324.1:ENST00000414307.6:ENST00000676508.1:ENST00000260970.8:ENST00000678695.1:ENST00000409714.7:ENST00000530152.5:ENST00000677750.1:ENST00000678721.1:ENST00000462903.6:ENST00000676756.1:ENST00000679107.1:ENST00000678499.1:ENST00000678638.1:ENST00000448752.7:ENST00000417938.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	68	2	1.34988	2.239465	3.12905	0.0498069	0.00566312	0.17488	0.0653997
chr1	1478113	1478201	1629	0	+	0.5	(0.476,0.515]	chr1	371	2	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	ATAD3B	ENSG00000160072.20	ENST00000673477.1:ENST00000308647.8:ENST00000472194.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	25	286	2	2.15613	2.2394499999999997	2.32277	3.98936e-4	1.53714e-4	0.0185763	0.0106835
chr12	62560005	62560102	5152122	0	+	0.28866000000000003	(0.28,0.32]	chr12	487598	2	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	MON2	ENSG00000061987.16	ENST00000641654.1:ENST00000546600.5:ENST00000393630.8:ENST00000547095.5:ENST00000552738.5:ENST00000393629.6:ENST00000551307.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	60	2	2.21798	2.23944	2.2609	0.0671429	0.00901091	0.183051	0.0851009
chr16	84978505	84978596	6533835	0	-	0.538462	(0.515,0.57]	chr16	633118	1	INTRON	INTRON	ZDHHC7	ENSG00000153786.13	ENST00000313732.9:ENST00000344861.9:ENST00000564466.5:ENST00000566909.1:ENST00000569488.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	43	2	2.15051	2.2394350000000003	2.32836	0.0238113	0.0126662	0.118889	0.0982897
chr3	47704833	47704930	1684297	0	-	0.536082	(0.515,0.57]	chr3	172064	31	INTRON	INTRON	SMARCC1	ENSG00000173473.11	ENST00000254480.10:ENST00000425518.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	43	2	2.15051	2.2394350000000003	2.32836	0.0238113	0.0126662	0.118889	0.0982897
chr6	47582964	47583064	2874631	0	+	0.53	(0.515,0.57]	chr6	272786	5	INTRON	INTRON	CD2AP	ENSG00000198087.7	ENST00000359314.5	protein_coding	protein_coding	protein_coding	protein_coding	4	43	2	2.15051	2.2394350000000003	2.32836	0.0238113	0.0126662	0.118889	0.0982897
chr15	92912299	92912398	6103813	0	+	0.50505	(0.476,0.515]	chr15	581401	33	INTRON	INTRON	ENSG00000279765:CHD2	ENSG00000279765.3:ENSG00000173575.22	ENST00000629685.2:ENST00000630790.1:ENST00000626874.2:ENST00000394196.9:ENST00000635856.1:ENST00000420239.7:ENST00000628375.2:ENST00000625990.3:ENST00000626782.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	51	2	1.53534	2.23942	2.9435	0.0476737	0.00929849	0.170116	0.0817766
chrX	9544666	9544766	7619455	0	+	0.48	(0.476,0.515]	chrX	779959	10	INTRON	INTRON	TBL1X	ENSG00000101849.18	ENST00000407597.7:ENST00000380961.5:ENST00000424279.6:ENST00000645353.2:ENST00000422314.5:ENST00000645686.1:ENST00000646640.1:ENST00000647172.1:ENST00000452824.5:ENST00000415293.6:ENST00000683056.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	51	2	1.53534	2.23942	2.9435	0.0476737	0.00929849	0.170116	0.0817766
chr7	158810460	158810560	3689623	0	-	0.48	(0.476,0.515]	chr7	342421	110	INTRON	INTRON	ESYT2	ENSG00000117868.18	ENST00000251527.10:ENST00000275418.13:ENST00000652148.1:ENST00000483958.5:ENST00000497111.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	62	2	1.27903	2.2393899999999998	3.19975	0.0608608	0.00383299	0.19287	0.0542786
chr1	70278140	70278240	480095	0	-	0.48	(0.476,0.515]	chr1	57720	9	INTRON	INTRON	ANKRD13C	ENSG00000118454.13	ENST00000370944.9:ENST00000262346.6	protein_coding	protein_coding	protein_coding	protein_coding	3	37	2	1.99341	2.23934	2.48527	0.037389	0.03496	0.155878	0.13747500000000001
chr1	197756379	197756479	616756	0	-	0.51	(0.476,0.515]	chr1	72894	202	INTRON	INTRON	DENND1B	ENSG00000213047.13	ENST00000620048.6:ENST00000294737.11:ENST00000367396.7:ENST00000235453.8:ENST00000422998.1:ENST00000468589.5:ENST00000495550.5:ENST00000477581.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	37	2	1.99341	2.23934	2.48527	0.037389	0.03496	0.155878	0.13747500000000001
chr12	123308609	123308709	5444616	0	-	0.51	(0.476,0.515]	chr12	520975	35	INTRON	INTRON	SBNO1	ENSG00000139697.14	ENST00000602398.3:ENST00000267176.8:ENST00000420886.6	protein_coding	protein_coding	protein_coding	protein_coding	3	37	2	1.99341	2.23934	2.48527	0.037389	0.03496	0.155878	0.13747500000000001
chr7	100017330	100017430	3363107	0	+	0.51	(0.476,0.515]	chr7	314213	4	SS5_PROX	SS5_PROX:INTRON	ZKSCAN1	ENSG00000106261.17	ENST00000535170.5:ENST00000324306.11:ENST00000426572.5:ENST00000482979.5:ENST00000432317.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	37	2	1.99341	2.23934	2.48527	0.037389	0.03496	0.155878	0.13747500000000001
chr16	85575943	85576043	6415591	0	+	0.52	(0.515,0.57]	chr16	615470	192	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	16	155	2	1.74689	2.239325	2.73176	0.00414607	8.08261e-5	0.0589317	0.00805538
chr9	123164825	123164924	4339431	0	-	0.363636	(0.35,0.378]	chr9	398906	34	INTRON	INTRON	STRBP	ENSG00000165209.19	ENST00000348403.10:ENST00000447404.6:ENST00000360998.3:ENST00000407982.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	49	2	1.58862	2.239325	2.89003	0.0615516	0.0122391	0.193423	0.0910127
chr1	17421608	17421702	384801	0	-	0.37234	(0.35,0.378]	chr1	45471	4	INTRON	INTRON	RCC2	ENSG00000179051.14	ENST00000375436.9:ENST00000375433.3	protein_coding	protein_coding	protein_coding	protein_coding	4	55	2	1.93432	2.239265	2.54421	0.0481438	0.00630238	0.153019	0.0722266
chr1	51466411	51466508	453825	0	-	0.494845	(0.476,0.515]	chr1	54423	7	INTRON	INTRON	EPS15	ENSG00000085832.17	ENST00000371733.8:ENST00000371730.6:ENST00000371727.5:ENST00000471391.1:ENST00000465467.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	37	2	1.91817	2.23925	2.56033	0.0459211	0.0287634	0.164984	0.127066
chr1	151285398	151285494	225599	0	+	0.5	(0.476,0.515]	chr1	25795	3	UTR5	UTR5:EXON_MRNA:INTRON	ZNF687	ENSG00000143373.18	ENST00000443959.1:ENST00000449313.5:ENST00000336715.11:ENST00000324048.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	37	2	1.91817	2.23925	2.56033	0.0459211	0.0287634	0.164984	0.127066
chr17	81691205	81691285	6691089	0	+	0.5	(0.476,0.515]	chr17	654066	1	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HGS	ENSG00000185359.14	ENST00000677161.1:ENST00000678096.1:ENST00000679191.1:ENST00000676546.1:ENST00000678387.1:ENST00000677109.1:ENST00000677484.1:ENST00000678115.1:ENST00000677243.1:ENST00000677044.1:ENST00000679336.1:ENST00000678196.1:ENST00000676462.1:ENST00000576498.5:ENST00000678105.1:ENST00000676478.1:ENST00000329138.9:ENST00000677225.1:ENST00000678866.1:ENST00000679275.1:ENST00000678541.1:ENST00000676729.1:ENST00000572392.2:ENST00000678846.1:ENST00000678658.1:ENST00000678893.1:ENST00000677818.1:ENST00000678313.1:ENST00000677402.1:ENST00000573080.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	37	2	1.91817	2.23925	2.56033	0.0459211	0.0287634	0.164984	0.127066
chrX	154745164	154745264	7915261	0	-	0.5	(0.476,0.515]	chrX	806107	285	INTRON	INTRON	GAB3	ENSG00000160219.12	ENST00000496390.5:ENST00000424127.3:ENST00000369575.7:ENST00000369568.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	37	2	1.91817	2.23925	2.56033	0.0459211	0.0287634	0.164984	0.127066
chr15	72272180	72272280	6219675	0	-	0.63	(0.57,1]	chr15	593725	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	PARP6	ENSG00000137817.17	ENST00000569795.6:ENST00000568360.5:ENST00000566844.1:ENST00000567633.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	28	2	1.55956	2.2392250000000002	2.91889	0.0448639	0.00719009	0.149888	0.0756118
chr11	108097135	108097235	4856633	0	+	0.55	(0.515,0.57]	chr11	452958	1	SS3_PROX	SS3_PROX:INTRON	CUL5	ENSG00000166266.14	ENST00000393094.7:ENST00000531427.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	33	2	2.01737	2.239205	2.46104	0.0352218	0.032841	0.145164	0.137535
chr14	101833887	101833986	5819231	0	+	0.555556	(0.515,0.57]	chr14	551866	17	INTRON	INTRON	PPP2R5C	ENSG00000078304.20	ENST00000694906.1:ENST00000422945.6:ENST00000554442.5:ENST00000328724.9:ENST00000553890.1:ENST00000350249.7:ENST00000557621.5:ENST00000556946.1:ENST00000556307.5:ENST00000553730.5:ENST00000557714.1:ENST00000334743.9:ENST00000445439.7:ENST00000557095.5:ENST00000556493.1:ENST00000553842.1:ENST00000556373.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	33	2	2.01737	2.239205	2.46104	0.0352218	0.032841	0.145164	0.137535
chr11	95825682	95825777	4853895	0	+	0.515789	(0.515,0.57]	chr11	452734	1	EXON_MRNA	EXON_MRNA:INTRON	CEP57	ENSG00000166037.11	ENST00000537677.5:ENST00000325486.9:ENST00000325542.10:ENST00000539855.5:ENST00000540830.5:ENST00000541150.5:ENST00000537093.5:ENST00000535224.1:ENST00000538158.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	39	2	1.56681	2.239105	2.9114	0.064862	0.00826019	0.179394	0.0813266
chr19	28526709	28526809	7166362	0	-	0.24	[0,0.28]	chr19	724189	585	INTRON	INTRON	ENSG00000283403:ENSG00000267243	ENSG00000283403.1:ENSG00000267243.6	ENST00000592347.5:ENST00000593065.5	lncRNA	lncRNA	lncRNA	lncRNA	13	219	2	2.20251	2.239095	2.27568	0.00425855	0.00134553	0.0573912	0.0337766
chr15	64245711	64245811	6203715	0	-	0.4	(0.378,0.408]	chr15	591722	286	INTRON	INTRON	CSNK1G1:ENSG00000259316	ENSG00000169118.18:ENSG00000259316.12	ENST00000303052.13:ENST00000607537.6:ENST00000561349.6:ENST00000635142.1:ENST00000634654.1:ENST00000634811.1:ENST00000606225.1:ENST00000606793.3:ENST00000634251.1:ENST00000634847.3:ENST00000635324.1:ENST00000635270.1:ENST00000635529.1:ENST00000634318.1:ENST00000635514.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	63	2	1.73164	2.2390499999999998	2.74646	0.0441773	0.00271684	0.149888	0.0481064
chr16	220170	220265	6426096	0	-	0.273684	[0,0.28]	chr16	617439	1	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	LUC7L	ENSG00000007392.17	ENST00000337351.8:ENST00000426094.5:ENST00000397783.5:ENST00000629543.2:ENST00000490762.5:ENST00000293872.13:ENST00000419516.5:ENST00000397780.5:ENST00000418978.5:ENST00000430864.5:ENST00000443357.5:ENST00000494366.5:ENST00000469109.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	123	2	1.68446	2.239045	2.79363	0.0190521	0.00466792	0.11904000000000001	0.0600108
chr10	96569988	96570088	4674260	0	-	0.41	(0.408,0.44]	chr10	430721	42	INTRON	INTRON	TM9SF3	ENSG00000077147.16	ENST00000371142.9:ENST00000649367.1:ENST00000443638.1:ENST00000464654.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	63	2	1.42102	2.239035	3.05705	0.0389354	0.00658331	0.160836	0.0701901
chr14	103411544	103411644	5825883	0	+	0.37	(0.35,0.378]	chr14	552796	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	MARK3	ENSG00000075413.19	ENST00000678179.1:ENST00000676838.1:ENST00000677348.1:ENST00000677404.1:ENST00000676694.1:ENST00000676938.1:ENST00000678619.1:ENST00000676897.1:ENST00000677214.1:ENST00000677942.1:ENST00000676830.1:ENST00000678999.1:ENST00000677228.1:ENST00000556744.2:ENST00000677104.1:ENST00000679330.1:ENST00000560417.6:ENST00000440884.7:ENST00000676475.1:ENST00000677035.1:ENST00000678022.1:ENST00000677560.1:ENST00000561314.6:ENST00000429436.7:ENST00000677118.1:ENST00000676564.1:ENST00000678169.1:ENST00000678175.1:ENST00000678897.1:ENST00000678278.1:ENST00000676645.1:ENST00000677829.1:ENST00000678302.1:ENST00000677133.1:ENST00000561164.2:ENST00000558223.6:ENST00000559328.6:ENST00000678207.1:ENST00000677360.1:ENST00000676905.1:ENST00000678343.1:ENST00000677347.1:ENST00000678071.1:ENST00000677432.1:ENST00000678237.1:ENST00000677604.1:ENST00000676518.1:ENST00000677051.1:ENST00000677857.1:ENST00000677869.1:ENST00000678423.1:ENST00000560603.6:ENST00000416682.6:ENST00000303622.13:ENST00000216288.11:ENST00000679105.1:ENST00000553942.5:ENST00000335102.9:ENST00000561225.1:ENST00000678091.1:ENST00000561071.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	55	2	2.19034	2.23902	2.2877	0.023941	0.0155765	0.119443	0.109411
chr9	130838516	130838615	4215110	0	+	0.363636	(0.35,0.378]	chr9	386432	26	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000393293.4:ENST00000318560.6	protein_coding	protein_coding	protein_coding	protein_coding	4	55	2	2.19034	2.23902	2.2877	0.023941	0.0155765	0.119443	0.109411
chr19	34454756	34454856	7053394	0	+	0.32	(0.28,0.32]	chr19	703550	2	SS5_PROX	SS5_PROX:INTRON	UBA2	ENSG00000126261.13	ENST00000586313.1:ENST00000246548.9:ENST00000439527.6:ENST00000591016.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	64	2	1.96376	2.23901	2.51426	0.0480066	0.00781326	0.153019	0.0788246
chr16	85604315	85604415	6415875	0	+	0.4	(0.378,0.408]	chr16	615470	476	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	5	63	2	1.86598	2.23893	2.61188	0.0300232	0.0047055	0.129138	0.0631419
chr5	615418	615517	2313406	0	+	0.383838	(0.378,0.408]	chr5	223834	26	INTRON	INTRON	CEP72	ENSG00000112877.8	ENST00000264935.6	protein_coding	protein_coding	protein_coding	protein_coding	5	63	2	1.86598	2.23893	2.61188	0.0300232	0.0047055	0.129138	0.0631419
chr1	46304817	46304917	96547	0	+	0.48	(0.476,0.515]	chr1	12964	6	INTRON	INTRON	UQCRH	ENSG00000173660.12	ENST00000311672.10:ENST00000489056.5:ENST00000486951.1:ENST00000496387.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	58	2	1.28655	2.2388700000000004	3.19119	0.075974	0.00325748	0.194842	0.0524329
chr12	132099403	132099502	5250338	0	+	0.292929	(0.28,0.32]	chr12	499298	75	INTRON	INTRON	EP400P1	ENSG00000185684.16	ENST00000407361.8:ENST00000446190.5:ENST00000690966.1:ENST00000689047.1:ENST00000454179.7:ENST00000689533.1:ENST00000688036.1:ENST00000688136.1:ENST00000488030.5:ENST00000389560.6:ENST00000689403.1:ENST00000443539.6:ENST00000392352.5:ENST00000539205.5:ENST00000332441.7	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	4	64	2	2.14002	2.2388649999999997	2.33771	0.0304107	0.0142701	0.130461	0.103838
chr6	160029149	160029249	3023573	0	+	0.52	(0.515,0.57]	chr6	282044	2	SS3_PROX	SS3_PROX:INTRON	IGF2R	ENSG00000197081.16	ENST00000676781.1:ENST00000677704.1:ENST00000356956.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	87	2	1.34922	2.238835	3.12845	0.0282286	4.79786e-4	0.137581	0.0203136
chr7	105024730	105024830	3374723	0	+	0.34	(0.32,0.35]	chr7	315854	98	INTRON	INTRON	KMT2E	ENSG00000005483.22	ENST00000622386.2:ENST00000257745.9:ENST00000334884.9:ENST00000311117.8:ENST00000478990.5:ENST00000480368.5:ENST00000495267.5:ENST00000476671.5:ENST00000667857.1:ENST00000474203.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	89	2	1.58023	2.23883	2.89743	0.0155051	0.0127608	0.109094	0.0926667
chr1	245866683	245866783	674290	0	-	0.48	(0.476,0.515]	chr1	79681	24	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000366517.5:ENST00000366516.5:ENST00000490107.6:ENST00000470510.5:ENST00000493441.5:ENST00000488153.5:ENST00000492487.5:ENST00000391836.3:ENST00000464398.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	50	2	1.99197	2.23874	2.48551	0.039572	0.00756632	0.143072	0.0773151
chr17	22161353	22161453	6579277	0	+	0.33	(0.32,0.35]	chr17	639556	701	INTRON	INTRON	UBBP4	ENSG00000263563.7	ENST00000648259.1:ENST00000688301.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	5	73	2	1.94202	2.238675	2.53533	0.0486128	0.00233994	0.153946	0.0442989
chr2	43914722	43914820	1109758	0	-	0.285714	(0.28,0.32]	chr2	118973	23	EXON_MRNA	EXON_MRNA:INTRON	LRPPRC	ENSG00000138095.20	ENST00000260665.12:ENST00000684454.1:ENST00000682308.1:ENST00000683459.1:ENST00000683623.1:ENST00000683125.1:ENST00000683994.1:ENST00000684619.1:ENST00000683833.1:ENST00000682546.1:ENST00000683080.1:ENST00000681993.1:ENST00000682585.1:ENST00000683220.1:ENST00000683796.1:ENST00000682607.1:ENST00000683590.1:ENST00000684306.1:ENST00000683213.1:ENST00000683409.1:ENST00000684418.1:ENST00000682779.1:ENST00000682885.1:ENST00000684743.1:ENST00000683346.1:ENST00000683072.1:ENST00000682303.1:ENST00000683329.1:ENST00000682933.1:ENST00000684383.1:ENST00000682480.1:ENST00000684290.1:ENST00000684341.1:ENST00000682595.1:ENST00000683645.1:ENST00000683802.1:ENST00000682845.1:ENST00000682295.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	94	2	1.83303	2.238635	2.64424	0.0370023	0.00159565	0.139194	0.0367961
chr10	125091112	125091212	4713641	0	-	0.46	(0.44,0.476]	chr10	434903	24	INTRON	INTRON	CTBP2	ENSG00000175029.17	ENST00000337195.9:ENST00000411419.6:ENST00000494626.6:ENST00000531469.5:ENST00000460976.5:ENST00000476817.1:ENST00000530884.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	47	2	1.81283	2.23858	2.66433	0.0343005	0.0194358	0.135641	0.119831
chr9	4999100	4999200	4095961	0	+	0.51	(0.476,0.515]	chr9	373235	127	INTRON	INTRON	JAK2	ENSG00000096968.14	ENST00000636127.1:ENST00000476574.5:ENST00000381652.4	protein_coding	protein_coding	protein_coding	protein_coding	4	51	2	1.79693	2.23858	2.68023	0.0649782	0.00353671	0.179417	0.0546236
chr1	50777516	50777616	450425	0	-	0.32	(0.28,0.32]	chr1	54249	324	INTRON	INTRON	FAF1	ENSG00000185104.21	ENST00000396153.7:ENST00000487898.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	65	2	1.60333	2.238575	2.87382	0.0413158	0.014868	0.161534	0.0989021
chr6	34641600	34641700	3085666	0	-	0.31	(0.28,0.32]	chr6	288679	343	INTRON	INTRON	ILRUN	ENSG00000196821.10	ENST00000374026.7:ENST00000374023.8:ENST00000374021.1	protein_coding	protein_coding	protein_coding	protein_coding	5	65	2	1.60333	2.238575	2.87382	0.0413158	0.014868	0.161534	0.0989021
chr13	95172323	95172423	5638573	0	-	0.43	(0.408,0.44]	chr13	537099	13	INTRON	INTRON	ABCC4	ENSG00000125257.16	ENST00000645237.2:ENST00000643051.1:ENST00000643842.1:ENST00000646439.1:ENST00000643816.1:ENST00000536256.3:ENST00000643556.1:ENST00000629385.1:ENST00000642524.1:ENST00000645532.1:ENST00000644471.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	45	2	1.75791	2.2385100000000002	2.71911	0.0378795	0.0189489	0.157034	0.108861
chr12	65218719	65218819	5157608	0	+	0.29	(0.28,0.32]	chr12	488253	1	SS5_PROX	SS5_PROX:INTRON	LEMD3	ENSG00000174106.3	ENST00000308330.3	protein_coding	protein_coding	protein_coding	protein_coding	7	79	2	1.27925	2.238495	3.19774	0.0642509	0.00548491	0.19963	0.0648867
chr21	46217219	46217316	7470760	0	-	0.391753	(0.378,0.408]	chr21	761526	3	INTRON	INTRON	LSS	ENSG00000160285.15	ENST00000356396.8:ENST00000397728.8:ENST00000457828.6:ENST00000522411.5:ENST00000464357.1:ENST00000450351.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	131	2	1.87761	2.2384	2.59919	0.00657764	6.41208e-4	0.0701901	0.0228915
chr17	27307191	27307283	6580670	0	+	0.336957	(0.32,0.35]	chr17	639627	4	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	WSB1	ENSG00000109046.15	ENST00000467843.6:ENST00000579733.5:ENST00000583193.5:ENST00000262394.7:ENST00000427287.6:ENST00000581185.5:ENST00000348811.6:ENST00000584114.1:ENST00000487603.5:ENST00000583096.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	119	2	2.11451	2.2383699999999997	2.36223	0.00625472	0.00267385	0.0684171	0.0478106
chr11	2972975	2973073	4891798	0	-	0.357143	(0.35,0.378]	chr11	458333	3	INTRON	INTRON	NAP1L4	ENSG00000205531.13	ENST00000620138.4:ENST00000380542.9:ENST00000526115.5:ENST00000532325.6:ENST00000448187.5:ENST00000399614.6:ENST00000430811.5:ENST00000529361.5:ENST00000528968.5:ENST00000530064.5:ENST00000526842.5:ENST00000531291.5:ENST00000455338.6:ENST00000534372.1	protein_coding	protein_coding	protein_coding	protein_coding	9	111	2	2.12264	2.23833	2.35402	0.00596483	0.0023865	0.0674604	0.0450097
chr15	40213474	40213574	6001795	0	+	0.39	(0.378,0.408]	chr15	570686	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	BUB1B	ENSG00000156970.13	ENST00000412359.7:ENST00000287598.11	protein_coding	protein_coding	protein_coding	protein_coding	5	64	2	1.53052	2.238325	2.94613	0.0744544	0.00112461	0.192012	0.0308177
chrX	73984541	73984641	7682504	0	+	0.5	(0.476,0.515]	chrX	786642	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	JPX	ENSG00000225470.8	ENST00000664637.1:ENST00000639185.1:ENST00000655090.1:ENST00000640437.1:ENST00000660546.1:ENST00000667886.1:ENST00000660840.1:ENST00000657179.1:ENST00000670506.1:ENST00000657910.1:ENST00000662120.1:ENST00000671207.1:ENST00000659254.1:ENST00000656624.1:ENST00000667573.1:ENST00000660856.1:ENST00000660836.1:ENST00000668590.1:ENST00000658649.1:ENST00000414209.6:ENST00000654137.1:ENST00000670994.1:ENST00000602772.5:ENST00000655879.1:ENST00000657372.1:ENST00000657096.1:ENST00000602985.6:ENST00000670685.1:ENST00000670503.1:ENST00000663027.1:ENST00000654995.1:ENST00000602895.6:ENST00000654374.1:ENST00000660087.1:ENST00000665032.1:ENST00000671336.1:ENST00000671476.1:ENST00000667057.1:ENST00000670192.1:ENST00000670464.1:ENST00000665345.1:ENST00000661546.1:ENST00000662543.1:ENST00000602938.6:ENST00000664295.1:ENST00000654005.1:ENST00000669149.1:ENST00000659852.1:ENST00000656509.1:ENST00000602294.6:ENST00000667294.1:ENST00000663470.1:ENST00000602920.6:ENST00000671021.1:ENST00000659849.1:ENST00000667937.1:ENST00000661130.1:ENST00000654196.1:ENST00000655994.1:ENST00000659373.1:ENST00000662239.1:ENST00000670805.1:ENST00000656263.1:ENST00000653069.1:ENST00000657638.1:ENST00000653808.1:ENST00000653929.1:ENST00000653885.1:ENST00000659023.1:ENST00000602546.5:ENST00000659622.1:ENST00000671518.1:ENST00000670408.1	lncRNA	lncRNA	lncRNA	lncRNA	8	92	2	1.69382	2.238315	2.78281	0.0219532	6.29551e-4	0.115201	0.0226349
chr2	96881083	96881182	1182035	0	-	0.50505	(0.476,0.515]	chr2	126720	22	INTRON	INTRON	FAM178B	ENSG00000168754.15	ENST00000393526.6:ENST00000490605.3:ENST00000470789.5:ENST00000494172.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	19	206	2	1.8070600000000001	2.2383100000000002	2.66956	0.00288791	1.09836e-4	0.0476348	0.0088711
chr17	37326445	37326545	6762240	0	-	0.48	(0.476,0.515]	chr17	664944	268	INTRON	INTRON	ACACA	ENSG00000278540.5	ENST00000616317.5:ENST00000614428.4:ENST00000613146.4:ENST00000615229.4:ENST00000621960.1:ENST00000617548.1:ENST00000616352.4:ENST00000614789.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	84	2	1.91368	2.238295	2.56291	0.0135123	0.00222582	0.101363	0.0421176
chr3	140970269	140970364	1523245	0	+	0.315789	(0.28,0.32]	chr3	158689	12	INTRON	INTRON	SLC25A36	ENSG00000114120.14	ENST00000446041.6:ENST00000324194.12:ENST00000648615.1:ENST00000502594.5:ENST00000453248.6:ENST00000631654.1:ENST00000513887.5:ENST00000512023.5:ENST00000512506.5:ENST00000502866.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	91	2	2.14002	2.23826	2.3365	0.0304107	0.00286158	0.130461	0.0494641
chr22	41109696	41109796	7521665	0	+	0.49	(0.476,0.515]	chr22	768519	12	INTRON	INTRON	EP300	ENSG00000100393.14	ENST00000263253.9:ENST00000674155.1:ENST00000637592.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	69	2	1.75142	2.238245	2.72507	0.0259024	0.0029369	0.121522	0.0496505
chr21	37075556	37075655	7404843	0	+	0.373737	(0.35,0.378]	chr21	754521	17	INTRON	INTRON	TTC3	ENSG00000182670.14	ENST00000492275.6:ENST00000418766.6:ENST00000485402.5:ENST00000450533.6:ENST00000438055.5:ENST00000696812.1:ENST00000696811.1:ENST00000463216.6:ENST00000481605.6:ENST00000540756.5:ENST00000494243.5:ENST00000399010.5:ENST00000411496.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	76	2	1.49028	2.238175	2.98607	0.0590834	9.86191e-4	0.168067	0.0288537
chr16	75004569	75004669	6389474	0	+	0.41	(0.408,0.44]	chr16	614482	18	INTRON	INTRON	ZNRF1	ENSG00000186187.12	ENST00000335325.9:ENST00000320619.10:ENST00000567962.5:ENST00000566250.5:ENST00000564320.1:ENST00000568511.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	74	2	1.83501	2.23814	2.64127	0.0323448	0.00125199	0.133003	0.0328543
chr1	160219943	160220041	571167	0	-	0.520408	(0.515,0.57]	chr1	69110	11	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	DCAF8	ENSG00000132716.19	ENST00000326837.6:ENST00000368073.7:ENST00000368074.6:ENST00000477163.1:ENST00000461888.5:ENST00000490368.5:ENST00000497354.1:ENST00000481831.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	77	2	1.59358	2.238125	2.88267	0.0158706	0.00152842	0.109464	0.0353936
chrX	3902755	3902847	7747622	0	-	0.336957	(0.32,0.35]	chrX	793150	3	INTRON	INTRON	ENSG00000285756	ENSG00000285756.2	ENST00000648217.1:ENST00000650456.1:ENST00000650538.1:ENST00000424415.2:ENST00000451781.1	lncRNA	lncRNA	lncRNA	lncRNA	11	151	2	2.23714	2.23795	2.23876	0.00333584	0.0014746	0.0512081	0.0352696
chr1	1394706	1394799	359868	0	-	0.430108	(0.408,0.44]	chr1	41791	9	INTRON	INTRON	CCNL2	ENSG00000221978.13	ENST00000400809.8:ENST00000482621.5:ENST00000496007.5:ENST00000481223.6:ENST00000488340.5:ENST00000471930.5:ENST00000408918.8:ENST00000473872.5:ENST00000425598.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	31	348	2	1.60723	2.237945	2.86866	0.00487512	2.59046e-6	0.0607461	0.00102504
chr1	8492167	8492266	370511	0	-	0.373737	(0.35,0.378]	chr1	43466	258	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000377464.5:ENST00000400907.6:ENST00000656437.1:ENST00000464972.5:ENST00000659924.1:ENST00000480342.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	42	2	1.98929	2.23793	2.48657	0.0417909	0.032907	0.147075	0.145164
chr1	40376503	40376603	81471	0	+	0.42	(0.408,0.44]	chr1	10553	14	INTRON	INTRON	SMAP2	ENSG00000084070.12	ENST00000435168.6:ENST00000372718.8:ENST00000372708.5	protein_coding	protein_coding	protein_coding	protein_coding	5	61	2	2.16746	2.23792	2.30838	0.024436	0.00547703	0.12011	0.0671198
chr11	70417323	70417423	4821812	0	+	0.34	(0.32,0.35]	chr11	449633	2	SS5_PROX	SS5_PROX:INTRON	CTTN	ENSG00000085733.16	ENST00000346329.7:ENST00000301843.13:ENST00000376561.7:ENST00000415461.2:ENST00000532334.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	12	156	2	2.02635	2.237915	2.44948	0.00226667	0.00216627	0.0434015	0.0425751
chr7	152159170	152159269	3678460	0	-	0.353535	(0.35,0.378]	chr7	341420	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	KMT2C	ENSG00000055609.21	ENST00000360104.8:ENST00000262189.11:ENST00000418061.2:ENST00000680877.1:ENST00000424877.6:ENST00000679560.1:ENST00000683120.1:ENST00000681923.1:ENST00000679393.1:ENST00000683200.1:ENST00000680029.1:ENST00000683178.1:ENST00000683502.1:ENST00000684261.1:ENST00000682283.1:ENST00000473186.5:ENST00000684649.1:ENST00000679882.1:ENST00000683886.1:ENST00000683397.1:ENST00000684307.1:ENST00000683625.1:ENST00000684398.1:ENST00000683670.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	41	2	2.23043	2.23789	2.24535	0.0647516	0.0187487	0.179192	0.117523
chr16	18398622	18398720	6455043	0	-	0.408163	(0.378,0.408]	chr16	622259	23	INTRON	INTRON	PKD1P5	ENSG00000254681.6	ENST00000532415.5:ENST00000544578.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	7	81	2	1.64608	2.237875	2.82967	0.0269107	0.00189968	0.123442	0.0402736
chr5	157790163	157790262	2757950	0	-	0.414141	(0.408,0.44]	chr5	260243	7	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	CLINT1	ENSG00000113282.14	ENST00000523094.5:ENST00000411809.7:ENST00000530742.5:ENST00000524306.1:ENST00000518855.5:ENST00000523908.5:ENST00000522381.1:ENST00000521047.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	74	2	2.17784	2.237805	2.29777	0.00916282	0.0067764	0.0855292	0.0711802
chr4	78818753	78818853	1981809	0	+	0.4	(0.378,0.408]	chr4	198463	417	INTRON	INTRON	BMP2K	ENSG00000138756.19	ENST00000389010.7:ENST00000502613.3:ENST00000502871.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	13	146	2	1.86752	2.237785	2.60805	0.00322258	9.04599e-4	0.0524329	0.0278365
chr3	73004142	73004242	1452027	0	+	0.37	(0.35,0.378]	chr3	152951	56	INTRON	INTRON	PPP4R2	ENSG00000163605.15	ENST00000482242.5:ENST00000356692.10:ENST00000470976.1:ENST00000488810.5:ENST00000495566.1:ENST00000476505.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	80	2	1.87726	2.237765	2.59827	0.0297629	0.0016492	0.12908	0.0375159
chr6	24708181	24708276	3070613	0	-	0.357895	(0.35,0.378]	chr6	285346	16	INTRON	INTRON	C6orf62	ENSG00000112308.13	ENST00000378119.9:ENST00000378102.3	protein_coding	protein_coding	protein_coding	protein_coding	6	80	2	1.87726	2.237765	2.59827	0.0297629	0.0016492	0.12908	0.0375159
chr1	88691223	88691323	155838	0	+	0.49	(0.476,0.515]	chr1	17045	62	INTRON	INTRON	PKN2	ENSG00000065243.20	ENST00000316005.11:ENST00000370521.8:ENST00000370513.9	protein_coding	protein_coding	protein_coding	protein_coding	5	60	2	2.01953	2.237755	2.45598	0.0163662	0.00945755	0.109586	0.0817766
chr1	113083030	113083129	188192	0	+	0.484848	(0.476,0.515]	chr1	20854	90	INTRON	INTRON	LRIG2	ENSG00000198799.12	ENST00000361127.6	protein_coding	protein_coding	protein_coding	protein_coding	5	60	2	2.01953	2.237755	2.45598	0.0163662	0.00945755	0.109586	0.0817766
chr2	26038309	26038408	713140	0	+	0.515152	(0.476,0.515]	chr2	82438	32	INTRON	INTRON	RAB10	ENSG00000084733.11	ENST00000264710.5:ENST00000495146.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	60	2	2.01953	2.237755	2.45598	0.0163662	0.00945755	0.109586	0.0817766
chr9	2801062	2801162	4228123	0	-	0.45	(0.44,0.476]	chr9	388650	179	INTRON	INTRON	PUM3	ENSG00000080608.10	ENST00000490444.2	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	5	61	2	2.03034	2.2377399999999996	2.44514	0.0173569	0.0087381	0.104189	0.0845538
chr1	156121050	156121149	230478	0	+	0.474747	(0.44,0.476]	chr1	27156	54	INTRON	INTRON	LMNA	ENSG00000160789.24	ENST00000502751.5:ENST00000368301.6:ENST00000676385.2:ENST00000675939.1:ENST00000675667.1:ENST00000675989.1:ENST00000676283.1:ENST00000674720.1:ENST00000496738.6:ENST00000674518.1:ENST00000676208.1:ENST00000674600.1:ENST00000675874.1:ENST00000676434.1:ENST00000684195.1:ENST00000683032.1:ENST00000682650.1:ENST00000361308.9:ENST00000368300.9:ENST00000675881.1:ENST00000675455.1:ENST00000677389.1:ENST00000470199.2:ENST00000469565.6:ENST00000368299.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	84	2	1.96805	2.237695	2.50734	0.0109533	0.00288299	0.0925675	0.0475859
chr6	31836517	31836617	2843850	0	+	0.43	(0.408,0.44]	chr6	267912	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	SNHG32	ENSG00000204387.14	ENST00000375640.7:ENST00000375641.6:ENST00000375635.6:ENST00000375638.7:ENST00000648677.1:ENST00000375642.6:ENST00000614363.4:ENST00000395789.5:ENST00000375633.5	lncRNA	lncRNA	lncRNA	lncRNA	39	441	2	2.0042	2.2376449999999997	2.47109	4.09783e-4	3.61989e-5	0.0185932	0.00482747
chr1	155535595	155535695	562624	0	-	0.31	(0.28,0.32]	chr1	67117	136	INTRON	INTRON	ASH1L	ENSG00000116539.14	ENST00000676814.1:ENST00000392403.8:ENST00000368346.7:ENST00000677213.1:ENST00000678117.1:ENST00000679097.1:ENST00000679333.1:ENST00000679133.1:ENST00000548830.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	79	2	1.31424	2.237625	3.16101	0.0580847	0.0061861	0.188651	0.0677395
chr6	149791852	149791952	2996467	0	+	0.34	(0.32,0.35]	chr6	280380	14	INTRON	INTRON	PCMT1	ENSG00000120265.19	ENST00000367384.7:ENST00000367378.6:ENST00000484601.6:ENST00000367380.9:ENST00000544496.5:ENST00000649295.1:ENST00000464889.7:ENST00000486585.2:ENST00000495487.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	81	2	2.0893	2.23756	2.38582	0.0138529	0.00738971	0.0953077	0.0769106
chr9	128111557	128111656	4357347	0	-	0.444444	(0.44,0.476]	chr9	400163	31	EXON_LNCRNA	EXON_LNCRNA	SLC25A25-AS1	ENSG00000234771.3	ENST00000418747.2	lncRNA	lncRNA	lncRNA	lncRNA	12	140	2	2.17542	2.237555	2.29969	0.00224408	8.95839e-4	0.0424375	0.0273866
chr20	50592043	50592143	7354423	0	-	0.48	(0.476,0.515]	chr20	749971	3	SS5_PROX	SS5_PROX:INTRON	RIPOR3	ENSG00000042062.13	ENST00000327979.8:ENST00000045083.6:ENST00000488529.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	46	2	2.06898	2.23753	2.40608	0.0425709	0.0137491	0.148082	0.10247
chr3	172255239	172255339	1561713	0	+	0.5	(0.476,0.515]	chr3	161582	33	INTRON	INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000469491.5:ENST00000336824.8:ENST00000416957.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	46	2	2.06898	2.23753	2.40608	0.0425709	0.0137491	0.148082	0.10247
chr5	43132600	43132699	2349144	0	+	0.545455	(0.515,0.57]	chr5	226661	77	INTRON	INTRON	ZNF131	ENSG00000172262.12	ENST00000515326.5:ENST00000682664.1:ENST00000510026.5:ENST00000504359.1:ENST00000509156.5:ENST00000508259.5:ENST00000507218.5:ENST00000306938.8:ENST00000505606.6:ENST00000509634.5:ENST00000509341.5:ENST00000511736.5:ENST00000509931.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	86	2	1.67927	2.237495	2.79572	0.0157733	5.08572e-4	0.101453	0.0202333
chr11	77719599	77719698	4994960	0	-	0.292929	(0.28,0.32]	chr11	472023	13	INTRON	INTRON	RSF1	ENSG00000048649.14	ENST00000308488.11:ENST00000526324.5:ENST00000528095.5:ENST00000534794.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	47	2	2.08149	2.23748	2.39347	0.0504457	0.031124	0.156383	0.143644
chr2	113908816	113908915	854432	0	+	0.30303	(0.28,0.32]	chr2	95897	37	INTRON	INTRON	ACTR3	ENSG00000115091.12	ENST00000443297.5:ENST00000263238.7:ENST00000415792.5:ENST00000446821.5:ENST00000535589.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	47	2	2.08149	2.23748	2.39347	0.0504457	0.031124	0.156383	0.143644
chr5	54075417	54075517	2618560	0	-	0.32	(0.28,0.32]	chr5	248838	5	PRIMIRNA	PRIMIRNA:INTRON	ARL15:ENSG00000265421	ENSG00000185305.12:ENSG00000265421.1	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2:ENST00000581837.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:processed_transcript:primary_miRNA	3	47	2	2.08149	2.23748	2.39347	0.0504457	0.031124	0.156383	0.143644
chr6	3075772	3075870	2788184	0	+	0.336735	(0.32,0.35]	chr6	263298	16	INTRON	INTRON	RIPK1	ENSG00000137275.16	ENST00000678809.1:ENST00000678874.1:ENST00000380409.3:ENST00000677799.1:ENST00000677261.1:ENST00000676758.1:ENST00000676995.1:ENST00000679118.1:ENST00000479389.1:ENST00000676591.1:ENST00000259808.9:ENST00000676618.1:ENST00000678084.1:ENST00000677361.1:ENST00000676965.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	81	2	1.84365	2.2374	2.63115	0.0184323	0.00608073	0.116493	0.0676501
chr1	110371430	110371528	182666	0	+	0.336735	(0.32,0.35]	chr1	20258	14	EXON_LNCRNA	EXON_LNCRNA:INTRON	LAMTOR5-AS1:ENSG00000273373	ENSG00000224699.10:ENSG00000273373.1	ENST00000626572.2:ENST00000609909.1	lncRNA	lncRNA	lncRNA	lncRNA	9	125	2	2.02647	2.2373950000000002	2.44832	0.0116933	8.3807e-4	0.0892647	0.0263691
chr17	44058811	44058910	6778316	0	-	0.50505	(0.476,0.515]	chr17	668123	182	INTRON	INTRON	LSM12	ENSG00000161654.10	ENST00000591247.6:ENST00000293406.8:ENST00000585388.2	protein_coding	protein_coding	protein_coding	protein_coding	5	51	2	1.58842	2.23736	2.8863	0.0406588	0.0111679	0.161534	0.0877435
chr1	113111703	113111794	188500	0	+	0.296703	(0.28,0.32]	chr1	20925	8	INTRON	INTRON	LRIG2	ENSG00000198799.12	ENST00000361127.6:ENST00000492207.5:ENST00000466161.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	47	2	1.90263	2.2372900000000002	2.57195	0.0503272	0.0331711	0.17488	0.133994
chr15	99807916	99808013	6115699	0	+	0.319588	(0.28,0.32]	chr15	582150	6	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	ENSG00000259363	ENSG00000259363.6	ENST00000559714.6:ENST00000653567.1:ENST00000664279.1:ENST00000661885.1:ENST00000670817.1:ENST00000560059.6:ENST00000670627.1:ENST00000668719.1:ENST00000656644.1:ENST00000662069.1:ENST00000660061.1:ENST00000664300.1:ENST00000558188.2:ENST00000665821.1:ENST00000662997.1:ENST00000670236.1	lncRNA	lncRNA	lncRNA	lncRNA	3	47	2	1.90263	2.2372900000000002	2.57195	0.0503272	0.0331711	0.17488	0.133994
chr8	90455070	90455164	3794651	0	+	0.297872	(0.28,0.32]	chr8	351807	8	EXON_LNCRNA	EXON_LNCRNA:INTRON	LINC00534	ENSG00000253394.7	ENST00000655523.1:ENST00000658299.1:ENST00000663329.1:ENST00000658342.1:ENST00000655219.1:ENST00000662692.1:ENST00000667296.1:ENST00000667565.1:ENST00000653734.1:ENST00000654785.1:ENST00000524361.5:ENST00000668745.1:ENST00000671657.1:ENST00000655123.1:ENST00000670903.1	lncRNA	lncRNA	lncRNA	lncRNA	3	47	2	1.90263	2.2372900000000002	2.57195	0.0503272	0.0331711	0.17488	0.133994
chr12	51000933	51001033	5324526	0	-	0.52	(0.515,0.57]	chr12	507701	3	SS3_PROX	SS3_PROX:INTRON	SLC11A2	ENSG00000110911.17	ENST00000547688.7:ENST00000644495.1:ENST00000643884.1:ENST00000546636.5:ENST00000547198.5:ENST00000394904.9:ENST00000262052.9:ENST00000643123.1:ENST00000646740.1:ENST00000642227.1:ENST00000541174.6:ENST00000545993.7:ENST00000546743.5:ENST00000547510.5:ENST00000546488.5:ENST00000547579.5:ENST00000550714.5:ENST00000547732.5:ENST00000549110.5:ENST00000548193.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	32	2	1.94945	2.237245	2.52504	0.0414068	0.029342	0.161557	0.128055
chr16	58717113	58717213	6496494	0	-	0.52	(0.515,0.57]	chr16	628676	3	SS3_PROX	SS3_PROX:INTRON	GOT2	ENSG00000125166.13	ENST00000245206.10:ENST00000434819.2:ENST00000564400.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	32	2	1.94945	2.237245	2.52504	0.0414068	0.029342	0.161557	0.128055
chr17	51099179	51099279	6796801	0	-	0.52	(0.515,0.57]	chr17	671024	191	INTRON	INTRON	SPAG9	ENSG00000008294.22	ENST00000262013.12:ENST00000505279.5:ENST00000357122.8	protein_coding	protein_coding	protein_coding	protein_coding	3	32	2	1.94945	2.237245	2.52504	0.0414068	0.029342	0.161557	0.128055
chr7	1111760	1111860	3461578	0	-	0.54	(0.515,0.57]	chr7	323589	19	INTRON	INTRON	C7orf50	ENSG00000146540.15	ENST00000357429.10:ENST00000397100.6:ENST00000397098.8:ENST00000488073.1:ENST00000491163.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	32	2	1.94945	2.237245	2.52504	0.0414068	0.029342	0.161557	0.128055
chr3	177163178	177163278	1872104	0	-	0.49	(0.476,0.515]	chr3	187428	18	INTRON	INTRON	TBL1XR1	ENSG00000177565.18	ENST00000457928.7:ENST00000430069.5:ENST00000673974.1:ENST00000352800.10:ENST00000422442.6:ENST00000428970.5:ENST00000424913.5:ENST00000437738.5:ENST00000431421.5:ENST00000635794.1:ENST00000630796.2:ENST00000450267.5:ENST00000630833.2:ENST00000431674.5:ENST00000422066.5:ENST00000443315.5:ENST00000627825.2:ENST00000427349.5:ENST00000413084.5:ENST00000637137.1:ENST00000491623.2:ENST00000637544.1:ENST00000636187.1:ENST00000636912.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	10	108	2	1.70009	2.237145	2.7742	0.0109107	8.54322e-4	0.0923273	0.0267428
chr1	225785662	225785762	327321	0	+	0.41	(0.408,0.44]	chr1	37657	19	INTRON	INTRON	SRP9	ENSG00000143742.14	ENST00000626563.2:ENST00000619790.4:ENST00000304786.12:ENST00000650651.1:ENST00000366839.8:ENST00000651465.1:ENST00000651761.1:ENST00000651653.1:ENST00000366838.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	129	2	2.12957	2.23712	2.34467	0.00421806	7.0284e-4	0.0572185	0.0241881
chr8	9673689	9673788	3700684	0	+	0.585859	(0.57,1]	chr8	343207	21	INTRON	INTRON	TNKS	ENSG00000173273.16	ENST00000310430.11:ENST00000520408.5:ENST00000518281.5:ENST00000518027.5:ENST00000521039.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	27	2	1.9042	2.2370799999999997	2.56996	0.0476976	0.00499145	0.153019	0.0646039
chr1	47296643	47296742	445930	0	-	0.464646	(0.44,0.476]	chr1	54045	4	INTRON	INTRON	STIL	ENSG00000123473.17	ENST00000360380.7:ENST00000371877.8:ENST00000337817.10:ENST00000682977.1:ENST00000396221.6:ENST00000447475.7:ENST00000436811.2:ENST00000682165.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	67	2	1.20745	2.23707	3.26669	0.0635101	0.00305435	0.198164	0.0493883
chr19	28497147	28497246	7166066	0	-	0.555556	(0.515,0.57]	chr19	724189	289	INTRON	INTRON	ENSG00000283403:ENSG00000267243	ENSG00000283403.1:ENSG00000267243.6	ENST00000592347.5:ENST00000593065.5	lncRNA	lncRNA	lncRNA	lncRNA	14	126	2	1.60404	2.237065	2.87009	0.00824724	1.49863e-4	0.0813266	0.011202
chr8	41734868	41734968	3938431	0	-	0.41	(0.408,0.44]	chr8	361117	4	INTRON	INTRON	ANK1	ENSG00000029534.21	ENST00000347528.8:ENST00000265709.13:ENST00000289734.13	protein_coding	protein_coding	protein_coding	protein_coding	11	129	2	1.94624	2.23696	2.52768	0.00627795	4.47322e-4	0.0686495	0.0191768
chr21	39300676	39300776	7465413	0	-	0.42	(0.408,0.44]	chr21	760568	17	INTRON	INTRON	BRWD1	ENSG00000185658.14	ENST00000333229.6:ENST00000342449.8:ENST00000380800.7:ENST00000341322.4:ENST00000470108.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	77	2	1.18528	2.2369	3.28852	0.0521903	0.00287185	0.177259	0.0474836
chr1	77953664	77953763	494255	0	-	0.30303	(0.28,0.32]	chr1	58487	40	INTRON	INTRON	FUBP1	ENSG00000162613.17	ENST00000370768.7:ENST00000492724.1:ENST00000492405.5:ENST00000294623.8:ENST00000370767.5:ENST00000487684.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	122	2	1.99459	2.236875	2.47916	0.0142587	0.0015115	0.0963352	0.0360297
chr12	54293781	54293881	5330920	0	-	0.45	(0.44,0.476]	chr12	508647	4	SS3_PROX	SS3_PROX:INTRON	NFE2	ENSG00000123405.14	ENST00000435572.7:ENST00000312156.8:ENST00000540264.2:ENST00000553070.5:ENST00000553198.1	protein_coding	protein_coding	protein_coding	protein_coding	21	207	2	1.29511	2.236875	3.17864	0.0222378	7.91545e-6	0.1162	0.0020223
chr12	111582563	111582663	5413065	0	-	0.3	(0.28,0.32]	chr12	516941	178	INTRON	INTRON	ATXN2	ENSG00000204842.18	ENST00000642389.2:ENST00000608853.5:ENST00000672613.1:ENST00000673436.1:ENST00000643669.2:ENST00000616825.4:ENST00000389153.10:ENST00000550104.5:ENST00000483311.6:ENST00000672335.1:ENST00000673557.1:ENST00000673283.1:ENST00000673449.1:ENST00000535949.5:ENST00000542287.6:ENST00000644883.1:ENST00000647305.1:ENST00000671792.1:ENST00000392645.6:ENST00000672105.1:ENST00000549455.1:ENST00000548492.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	77	2	2.22069	2.236835	2.25298	0.0243177	0.00791652	0.12011	0.0797304
chr18	9124273	9124373	6868815	0	+	0.41	(0.408,0.44]	chr18	680531	12	INTRON	INTRON	NDUFV2	ENSG00000178127.13	ENST00000318388.11:ENST00000400033.1:ENST00000465096.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	101	2	1.58026	2.23682	2.89338	0.0444624	1.20672e-4	0.149888	0.00938389
chr3	185769090	185769190	1885789	0	-	0.46	(0.44,0.476]	chr3	188573	704	INTRON	INTRON	IGF2BP2	ENSG00000073792.16	ENST00000382199.7:ENST00000346192.7:ENST00000457616.6:ENST00000421047.3:ENST00000461957.5:ENST00000493302.5:ENST00000466476.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	138	2	1.90369	2.2368050000000004	2.56992	0.00551222	0.00035449500000000003	0.0648867	0.0168579
chr1	45610456	45610553	93476	0	+	0.391753	(0.378,0.408]	chr1	12613	13	EXON_LNCRNA	EXON_LNCRNA:INTRON	NASP	ENSG00000132780.17	ENST00000437901.6:ENST00000537798.5:ENST00000437362.6:ENST00000350030.8:ENST00000527359.5:ENST00000453748.5:ENST00000525515.5:ENST00000528238.5:ENST00000372052.8:ENST00000351223.7:ENST00000530073.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	12	138	2	1.86554	2.236795	2.60805	0.00411556	9.04599e-4	0.0585811	0.0278365
chr1	156769535	156769635	231957	0	+	0.31	(0.28,0.32]	chr1	27482	9	INTRON	INTRON	PRCC	ENSG00000143294.15	ENST00000491853.5:ENST00000271526.9:ENST00000473387.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	48	2	1.86684	2.2367	2.60656	0.0605813	0.0256827	0.171122	0.133676
chr3	47683475	47683574	1684077	0	-	0.353535	(0.35,0.378]	chr3	172040	26	INTRON	INTRON	SMARCC1	ENSG00000173473.11	ENST00000254480.10:ENST00000425518.5:ENST00000462198.5:ENST00000485737.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	67	2	2.04224	2.23666	2.43108	0.0363073	0.00345501	0.138959	0.0539802
chr21	31723292	31723392	7437743	0	-	0.55	(0.515,0.57]	chr21	758689	166	INTRON	INTRON	SCAF4	ENSG00000156304.15	ENST00000286835.12:ENST00000399804.5:ENST00000434667.3:ENST00000485790.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	43	2	2.01737	2.2366099999999998	2.45585	0.0352218	0.00797827	0.137535	0.0798772
chr3	69748256	69748356	1448456	0	+	0.57	(0.515,0.57]	chr3	152745	82	INTRON	INTRON	MITF	ENSG00000187098.18	ENST00000687384.1:ENST00000693031.1:ENST00000352241.9:ENST00000461511.1:ENST00000642352.1:ENST00000495741.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	43	2	2.01737	2.2366099999999998	2.45585	0.0352218	0.00797827	0.137535	0.0798772
chr4	70821261	70821361	2155627	0	-	0.53	(0.515,0.57]	chr4	212357	4	SS3_PROX	SS3_PROX:INTRON	GRSF1	ENSG00000132463.15	ENST00000254799.11:ENST00000505068.5:ENST00000499044.6:ENST00000502323.5:ENST00000514161.5:ENST00000506453.1:ENST00000508091.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	43	2	2.01737	2.2366099999999998	2.45585	0.0352218	0.00797827	0.137535	0.0798772
chr9	136896618	136896718	4222288	0	+	0.59	(0.57,1]	chr9	387796	57	INTRON	INTRON	TRAF2	ENSG00000127191.18	ENST00000419057.5:ENST00000429509.5:ENST00000247668.7:ENST00000414589.1	protein_coding	protein_coding	protein_coding	protein_coding	5	35	2	1.91937	2.23658	2.55379	0.0468438	0.0015786	0.167716	0.0362091
chr12	122509242	122509340	5442063	0	-	0.5	(0.476,0.515]	chr12	520545	4	INTRON	INTRON	RSRC2	ENSG00000111011.18	ENST00000331738.12:ENST00000532695.5:ENST00000433877.6:ENST00000527173.6:ENST00000392442.6:ENST00000525335.6:ENST00000344591.8:ENST00000528263.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	49	2	2.13854	2.23657	2.3346	0.0776563	0.00494807	0.196285	0.0646039
chr20	35407947	35408046	7335169	0	-	0.515152	(0.476,0.515]	chr20	747197	134	INTRON	INTRON	UQCC1	ENSG00000101019.22	ENST00000374380.6:ENST00000374394.7:ENST00000374384.6:ENST00000359226.6:ENST00000349714.9:ENST00000457259.5:ENST00000374385.10:ENST00000453855.5:ENST00000424405.5:ENST00000443429.5:ENST00000438533.5:ENST00000397554.5:ENST00000491125.5:ENST00000491040.5:ENST00000397553.6:ENST00000495752.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	96	2	2.10798	2.2365500000000003	2.36512	0.00628634	0.00246559	0.0722266	0.0446195
chr1	2236154	2236253	2244	0	+	0.606061	(0.57,1]	chr1	553	31	INTRON	INTRON	SKI	ENSG00000157933.10	ENST00000378536.5:ENST00000508416.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	27	2	2.05026	2.23654	2.42282	0.0321326	0.00879576	0.145026	0.0790073
chr16	2503047	2503147	6278588	0	+	0.58	(0.57,1]	chr16	600536	22	UTR3	UTR3:EXON_MRNA	TBC1D24	ENSG00000162065.14	ENST00000567020.6:ENST00000630263.2:ENST00000646147.1:ENST00000627285.1:ENST00000564879.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	27	2	2.05026	2.23654	2.42282	0.0321326	0.00879576	0.145026	0.0790073
chr22	19493032	19493131	7476967	0	+	0.59596	(0.57,1]	chr22	762407	87	INTRON	INTRON	CDC45	ENSG00000093009.11	ENST00000407835.6:ENST00000437685.6:ENST00000483431.5:ENST00000438587.6:ENST00000672837.1:ENST00000263201.7:ENST00000404724.7:ENST00000487669.5:ENST00000428937.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	27	2	2.05026	2.23654	2.42282	0.0321326	0.00879576	0.145026	0.0790073
chr19	51879015	51879104	7204317	0	-	0.483146	(0.476,0.515]	chr19	731052	1	INTRON	INTRON	ZNF577	ENSG00000161551.15	ENST00000638827.1:ENST00000639703.1:ENST00000640955.1:ENST00000301399.12:ENST00000638348.2:ENST00000451628.9:ENST00000639636.2:ENST00000638325.1:ENST00000638814.1:ENST00000638538.1:ENST00000638423.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	45	2	1.52615	2.236535	2.94692	0.0739267	0.00794331	0.190914	0.0797304
chr7	10655535	10655635	3483335	0	-	0.3	(0.28,0.32]	chr7	325772	936	INTRON	INTRON	MGC4859	ENSG00000283117.1	ENST00000634803.1	lncRNA	lncRNA	lncRNA	lncRNA	7	108	2	2.08803	2.236535	2.38504	0.0103533	0.00475871	0.085045	0.0636201
chr8	47832718	47832816	3944417	0	-	0.5	(0.476,0.515]	chr8	361659	4	INTRON	INTRON	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7	protein_coding	protein_coding	protein_coding	protein_coding	4	45	2	1.52615	2.236535	2.94692	0.0739267	0.00794331	0.190914	0.0797304
chr17	29280901	29281001	6747664	0	-	0.52	(0.515,0.57]	chr17	663228	130	INTRON	INTRON	NUFIP2	ENSG00000108256.9	ENST00000225388.9:ENST00000579665.1	protein_coding	protein_coding	protein_coding	protein_coding	4	43	2	2.21273	2.236425	2.26012	0.0196151	0.0160033	0.109486	0.109464
chr2	61227618	61227718	1128047	0	-	0.53	(0.515,0.57]	chr2	121186	4	SS3_PROX	SS3_PROX:INTRON	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000411912.5:ENST00000463046.5:ENST00000472706.5:ENST00000453734.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	43	2	2.21273	2.236425	2.26012	0.0196151	0.0160033	0.109486	0.109464
chr9	130876831	130876929	4215498	0	+	0.530612	(0.515,0.57]	chr9	386466	14	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000318560.6	protein_coding	protein_coding	protein_coding	protein_coding	10	98	2	2.15	2.236405	2.32281	0.00252428	0.00172219	0.0446656	0.0383099
chr4	82833467	82833567	2179494	0	-	0.31	(0.28,0.32]	chr4	214267	21	INTRON	INTRON	SEC31A	ENSG00000138674.17	ENST00000395310.7:ENST00000513858.5:ENST00000348405.8:ENST00000503937.5:ENST00000448323.5:ENST00000311785.11:ENST00000509142.5:ENST00000443462.6:ENST00000500777.6:ENST00000505472.5:ENST00000355196.6:ENST00000508502.5:ENST00000264405.9:ENST00000505984.5:ENST00000511338.1:ENST00000515749.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	12	163	2	2.06401	2.2363850000000003	2.40876	0.00588618	0.00161214	0.0669992	0.0369123
chr3	9426675	9426771	1359181	0	+	0.53125	(0.515,0.57]	chr3	142683	1	INTRON	INTRON	SETD5	ENSG00000168137.20	ENST00000402198.7:ENST00000431285.5:ENST00000683012.1:ENST00000463180.5:ENST00000478475.5:ENST00000415650.5:ENST00000682536.1:ENST00000663774.1:ENST00000665872.1:ENST00000666307.1:ENST00000693430.1:ENST00000691925.1:ENST00000684606.1:ENST00000691175.1:ENST00000688835.1:ENST00000683262.1:ENST00000443339.5:ENST00000406341.5:ENST00000670063.1:ENST00000468208.2:ENST00000691299.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	49	2	1.44237	2.23637	3.03037	0.0456196	0.00608732	0.164236	0.0676501
chr7	155780793	155780892	3453284	0	+	0.40404	(0.378,0.408]	chr7	322755	58	UTR3	UTR3:EXON_MRNA	RBM33	ENSG00000184863.11	ENST00000401878.8:ENST00000341148.7	protein_coding	protein_coding	protein_coding	protein_coding	5	54	2	1.80483	2.23634	2.66785	0.0224639	0.0201276	0.121243	0.11692
chr11	2970519	2970605	4891772	0	-	0.546512	(0.515,0.57]	chr11	458323	2	INTRON	INTRON	NAP1L4	ENSG00000205531.13	ENST00000620138.4:ENST00000380542.9:ENST00000526115.5:ENST00000532325.6:ENST00000448187.5:ENST00000399614.6:ENST00000430811.5:ENST00000529361.5:ENST00000528968.5	protein_coding	protein_coding	protein_coding	protein_coding	7	71	2	2.15866	2.2363	2.31394	0.0100547	0.00231716	0.0848452	0.0442594
chr7	76593602	76593702	3340804	0	+	0.58	(0.57,1]	chr7	311170	417	INTRON	INTRON	ENSG00000205485	ENSG00000205485.13	ENST00000418663.5:ENST00000450661.1:ENST00000423084.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	9	52	2	1.8633	2.23623	2.60916	0.0066826	0.00119055	0.0738715	0.0315806
chr20	32115732	32115832	7254368	0	+	0.22	[0,0.28]	chr20	736838	53	INTRON	INTRON	TM9SF4	ENSG00000101337.16	ENST00000398022.7:ENST00000442842.5:ENST00000450829.5:ENST00000217315.9:ENST00000417389.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	123	2	2.06779	2.236145	2.4045	0.0096412	0.00723722	0.0870233	0.0729826
chr2	53966648	53966748	1120535	0	-	0.41	(0.408,0.44]	chr2	120102	170	INTRON	INTRON	PSME4	ENSG00000068878.15	ENST00000404125.6:ENST00000389993.7:ENST00000481518.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	64	2	1.57433	2.23614	2.89795	0.0229059	0.0110735	0.12581	0.0873897
chr5	146247116	146247216	2514557	0	+	0.38	(0.378,0.408]	chr5	240194	93	INTRON	INTRON	ENSG00000275740:RBM27	ENSG00000275740.1:ENSG00000091009.8	ENST00000506502.2:ENST00000265271.7	protein_coding	protein_coding	protein_coding	protein_coding	3	39	2	1.76032	2.236075	2.71183	0.0721577	0.0170789	0.187433	0.110899
chr6	89084485	89084581	2916435	0	+	0.364583	(0.35,0.378]	chr6	275595	4	UTR3	UTR3:EXON_MRNA	PNRC1	ENSG00000146278.11	ENST00000336032.4	protein_coding	protein_coding	protein_coding	protein_coding	6	62	2	1.38772	2.236015	3.08431	0.0555481	0.0065853	0.18407	0.0701901
chr2	147967448	147967548	1242238	0	-	0.29	(0.28,0.32]	chr2	131858	82	INTRON	INTRON	ORC4	ENSG00000115947.14	ENST00000392857.10:ENST00000264169.6:ENST00000536575.5:ENST00000535373.5:ENST00000540442.5:ENST00000461711.5:ENST00000496670.6:ENST00000490200.5:ENST00000416719.5:ENST00000457954.5:ENST00000440042.1:ENST00000495601.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	65	2	1.64429	2.23599	2.82769	0.0365539	0.0169391	0.153932	0.103888
chr7	10522815	10522915	3482007	0	-	0.32	(0.28,0.32]	chr7	325766	697	INTRON	INTRON	MGC4859	ENSG00000283117.1	ENST00000634803.1	lncRNA	lncRNA	lncRNA	lncRNA	5	65	2	1.64429	2.23599	2.82769	0.0365539	0.0169391	0.153932	0.103888
chr11	31508155	31508255	4939227	0	-	0.32	(0.28,0.32]	chr11	462601	196	INTRON	INTRON	IMMP1L	ENSG00000148950.11	ENST00000532287.6:ENST00000534812.5:ENST00000526776.5:ENST00000278200.5:ENST00000648582.1:ENST00000533642.1:ENST00000527184.5:ENST00000528161.5:ENST00000532624.5:ENST00000529749.5:ENST00000530023.5:ENST00000531693.1:ENST00000532668.1:ENST00000533921.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	123	2	1.50303	2.235965	2.9689	0.0220301	0.00194987	0.123836	0.0400465
chr17	64501818	64501911	6815826	0	-	0.494624	(0.476,0.515]	chr17	673799	7	UTR3	UTR3:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DDX5	ENSG00000108654.16	ENST00000225792.10:ENST00000678890.1:ENST00000676601.1:ENST00000676575.1:ENST00000676969.1:ENST00000678810.1:ENST00000585317.2:ENST00000678110.1:ENST00000580026.6:ENST00000678757.1:ENST00000676581.1:ENST00000676785.1:ENST00000585111.2:ENST00000577922.6:ENST00000450599.7:ENST00000678814.1:ENST00000677726.1:ENST00000583212.2:ENST00000579461.2:ENST00000540698.6:ENST00000581230.5:ENST00000581693.5:ENST00000582326.2:ENST00000578491.2:ENST00000578804.5:ENST00000578758.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	58	669	2	2.0441	2.23592	2.42774	1.33513e-4	2.15001e-5	0.0099761	0.00377602
chr11	70291655	70291755	4820621	0	+	0.44	(0.408,0.44]	chr11	449385	72	INTRON	INTRON	PPFIA1	ENSG00000131626.19	ENST00000253925.12:ENST00000389547.7:ENST00000532504.5:ENST00000530746.1:ENST00000532024.1:ENST00000648755.1:ENST00000644155.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	45	2	1.81759	2.235895	2.6542	0.0316273	0.0227514	0.144405	0.117618
chr16	89388387	89388487	6542569	0	-	0.43	(0.408,0.44]	chr16	634240	149	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000647238.1:ENST00000644045.1:ENST00000643147.1:ENST00000644139.1:ENST00000568512.6:ENST00000566973.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	45	2	1.81759	2.235895	2.6542	0.0316273	0.0227514	0.144405	0.117618
chr4	126483835	126483935	2235547	0	-	0.43	(0.408,0.44]	chr4	219023	183	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	4	45	2	1.81759	2.235895	2.6542	0.0316273	0.0227514	0.144405	0.117618
chr6	161096094	161096191	3025558	0	+	0.350515	(0.35,0.378]	chr6	282401	19	INTRON	INTRON	MAP3K4	ENSG00000085511.20	ENST00000366919.6:ENST00000392142.9:ENST00000366920.6:ENST00000348824.11:ENST00000544041.5:ENST00000490904.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	91	2	1.78162	2.23581	2.69	0.0251606	0.00107271	0.12011	0.0300133
chr10	3121828	3121927	4382091	0	+	0.525253	(0.515,0.57]	chr10	404146	14	INTRON	INTRON	PFKP	ENSG00000067057.18	ENST00000381125.9:ENST00000381075.7:ENST00000678206.1:ENST00000678089.1:ENST00000676796.1:ENST00000415005.6:ENST00000413079.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	19	173	2	1.55858	2.235805	2.91303	0.00769566	1.64175e-5	0.0754631	0.00305726
chr1	222625736	222625831	319428	0	+	0.547368	(0.515,0.57]	chr1	36622	5	INTRON	INTRON	MIA3	ENSG00000154305.18	ENST00000344922.10:ENST00000470521.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	24	2	2.23241	2.23578	2.23915	0.0596178	0.0581268	0.188651	0.16883600000000001
chr10	50417563	50417663	4618621	0	-	0.52	(0.515,0.57]	chr10	425423	1	SS5_PROX	SS5_PROX:INTRON	SGMS1	ENSG00000198964.14	ENST00000429490.5:ENST00000361781.7:ENST00000619438.4:ENST00000492601.2:ENST00000609445.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	24	2	2.23241	2.23578	2.23915	0.0596178	0.0581268	0.188651	0.16883600000000001
chr11	62568807	62568904	4959546	0	-	0.515464	(0.515,0.57]	chr11	466248	9	INTRON	INTRON	EEF1G	ENSG00000254772.10	ENST00000329251.5:ENST00000525340.5:ENST00000524420.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	24	2	2.23241	2.23578	2.23915	0.0596178	0.0581268	0.188651	0.16883600000000001
chr15	84678125	84678225	6251639	0	-	0.55	(0.515,0.57]	chr15	596648	44	INTRON	INTRON	SEC11A	ENSG00000140612.14	ENST00000559729.5:ENST00000268220.12:ENST00000560266.5:ENST00000558134.5:ENST00000558217.5:ENST00000455959.7:ENST00000560409.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	24	2	2.23241	2.23578	2.23915	0.0596178	0.0581268	0.188651	0.16883600000000001
chr16	88050789	88050889	6417989	0	+	0.52	(0.515,0.57]	chr16	615762	124	INTRON	INTRON	BANP	ENSG00000172530.21	ENST00000286122.11:ENST00000393208.6:ENST00000682872.1:ENST00000479780.6:ENST00000626016.2:ENST00000355022.8:ENST00000538234.5:ENST00000393207.5:ENST00000466847.5:ENST00000565242.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	24	2	2.23241	2.23578	2.23915	0.0596178	0.0581268	0.188651	0.16883600000000001
chr2	233252042	233252142	1039354	0	+	0.54	(0.515,0.57]	chr2	110864	1	SS5_PROX	SS5_PROX:INTRON	ATG16L1	ENSG00000085978.22	ENST00000431917.5:ENST00000347464.9:ENST00000444735.5:ENST00000373525.9:ENST00000392021.7:ENST00000392017.9:ENST00000419681.5:ENST00000479942.5:ENST00000485623.5:ENST00000474148.5:ENST00000417017.5:ENST00000392020.8:ENST00000392018.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	24	2	2.23241	2.23578	2.23915	0.0596178	0.0581268	0.188651	0.16883600000000001
chr21	44141912	44142011	7416367	0	+	0.545455	(0.515,0.57]	chr21	756046	6	INTRON	INTRON	GATD3	ENSG00000160221.18	ENST00000644251.1:ENST00000645487.1:ENST00000495007.5:ENST00000348499.9:ENST00000291577.11:ENST00000646873.1:ENST00000419699.1:ENST00000449622.6:ENST00000642815.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	24	2	2.23241	2.23578	2.23915	0.0596178	0.0581268	0.188651	0.16883600000000001
chr4	26343990	26344079	1936903	0	+	0.539326	(0.515,0.57]	chr4	194358	4	INTRON	INTRON	RBPJ	ENSG00000168214.22	ENST00000512351.5:ENST00000681799.1:ENST00000681403.1:ENST00000342295.6:ENST00000512671.6:ENST00000506956.5:ENST00000345843.8:ENST00000361572.10:ENST00000514380.5:ENST00000514807.5:ENST00000348160.9:ENST00000681506.1:ENST00000509158.6:ENST00000691085.1:ENST00000692303.1:ENST00000681856.1:ENST00000513182.5:ENST00000681025.1:ENST00000681679.1:ENST00000680210.1:ENST00000355476.8:ENST00000680140.1:ENST00000511401.5:ENST00000680511.1:ENST00000510778.7:ENST00000679698.1:ENST00000679469.1:ENST00000681484.1:ENST00000505958.6:ENST00000507561.5:ENST00000514730.5:ENST00000507574.5:ENST00000514675.5:ENST00000515573.5:ENST00000689192.1:ENST00000680928.1:ENST00000681260.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	24	2	2.23241	2.23578	2.23915	0.0596178	0.0581268	0.188651	0.16883600000000001
chr5	140678606	140678705	2738339	0	-	0.525253	(0.515,0.57]	chr5	257958	7	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	HARS1	ENSG00000170445.16	ENST00000431330.7:ENST00000675366.1:ENST00000674523.1:ENST00000676327.1:ENST00000675094.1:ENST00000506579.6:ENST00000675851.1:ENST00000675698.1:ENST00000675763.1:ENST00000675967.1:ENST00000675355.1:ENST00000675898.1:ENST00000457527.6:ENST00000675827.1:ENST00000504156.7:ENST00000307633.7:ENST00000504366.5:ENST00000509087.2:ENST00000438307.6:ENST00000512396.6:ENST00000645491.1:ENST00000675204.1:ENST00000643686.1:ENST00000646229.1:ENST00000507746.7:ENST00000415192.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	24	2	2.23241	2.23578	2.23915	0.0596178	0.0581268	0.188651	0.16883600000000001
chr8	105501611	105501711	3839078	0	+	0.54	(0.515,0.57]	chr8	354063	500	INTRON	INTRON	ZFPM2	ENSG00000169946.14	ENST00000407775.7:ENST00000520492.5:ENST00000520027.5:ENST00000524235.5:ENST00000511341.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	24	2	2.23241	2.23578	2.23915	0.0596178	0.0581268	0.188651	0.16883600000000001
chr9	137647719	137647817	4223762	0	+	0.520408	(0.515,0.57]	chr9	388164	9	INTRON	INTRON	EHMT1	ENSG00000181090.21	ENST00000462484.5:ENST00000371394.6:ENST00000630754.2:ENST00000460843.6:ENST00000626216.2:ENST00000629335.2:ENST00000637335.1:ENST00000636376.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	24	2	2.23241	2.23578	2.23915	0.0596178	0.0581268	0.188651	0.16883600000000001
chr1	162595845	162595945	238672	0	+	0.44	(0.408,0.44]	chr1	28751	22	INTRON	INTRON	UAP1	ENSG00000117143.14	ENST00000367925.6:ENST00000367926.9	protein_coding	protein_coding	protein_coding	protein_coding	17	194	2	2.18142	2.23577	2.29012	9.26918e-4	4.52544e-4	0.0278822	0.0192381
chr6	167019128	167019228	3033568	0	+	0.44	(0.408,0.44]	chr6	282656	52	INTRON	INTRON	CEP43	ENSG00000213066.13	ENST00000622353.4:ENST00000366847.9:ENST00000349556.4	protein_coding	protein_coding	protein_coding	protein_coding	26	291	2	1.68904	2.2357650000000002	2.78249	0.00405238	8.90696e-6	0.0557072	0.00214966
chr19	49163667	49163765	7089091	0	+	0.520408	(0.515,0.57]	chr19	709755	39	INTRON	INTRON	TRPM4	ENSG00000130529.16	ENST00000598691.5:ENST00000598697.5:ENST00000252826.10:ENST00000595519.5:ENST00000427978.6:ENST00000598502.5:ENST00000596338.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	59	2	2.03368	2.235755	2.43783	0.00916404	0.00803127	0.0812949	0.0803474
chr16	11884980	11885080	6446084	0	-	0.51	(0.476,0.515]	chr16	621076	4	SS5_PROX	SS5_PROX:INTRON	GSPT1	ENSG00000103342.13	ENST00000434724.7:ENST00000439887.6:ENST00000565267.5:ENST00000563468.5:ENST00000420576.6:ENST00000564790.5:ENST00000562794.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	38	2	1.99197	2.23573	2.47949	0.039572	0.0326974	0.145164	0.143072
chr16	16648905	16649005	6312354	0	+	0.51	(0.476,0.515]	chr16	604111	4	SS5_PROX	SS5_PROX:INTRON	ENSG00000260126	ENSG00000260126.2	ENST00000567465.2	lncRNA	lncRNA	lncRNA	lncRNA	3	38	2	1.99197	2.23573	2.47949	0.039572	0.0326974	0.145164	0.143072
chr19	23677906	23678005	7163875	0	-	0.494949	(0.476,0.515]	chr19	724046	144	INTRON	INTRON	ZNF675	ENSG00000197372.10	ENST00000601935.5:ENST00000600313.5:ENST00000596211.5:ENST00000359788.9:ENST00000599535.1:ENST00000597074.5:ENST00000601010.5:ENST00000599168.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	38	2	1.99197	2.23573	2.47949	0.039572	0.0326974	0.145164	0.143072
chr7	45019028	45019128	3316099	0	+	0.49	(0.476,0.515]	chr7	308173	183	INTRON	INTRON	CCM2	ENSG00000136280.17	ENST00000461377.5:ENST00000544363.5:ENST00000541586.5:ENST00000478582.5:ENST00000258781.11:ENST00000488727.5:ENST00000648329.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	38	2	1.99197	2.23573	2.47949	0.039572	0.0326974	0.145164	0.143072
chr7	5221902	5222001	3272288	0	+	0.484848	(0.476,0.515]	chr7	304127	30	INTRON	INTRON	WIPI2	ENSG00000157954.15	ENST00000401525.7:ENST00000288828.9:ENST00000404704.7:ENST00000466014.5:ENST00000382384.6:ENST00000484262.1:ENST00000465102.5:ENST00000480238.5:ENST00000488359.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	72	2	2.09697	2.235725	2.37448	0.0136924	0.00419067	0.0949306	0.0591344
chr5	112978077	112978175	2453391	0	+	0.520408	(0.515,0.57]	chr5	235061	7	INTRON	INTRON	DCP2	ENSG00000172795.17	ENST00000515408.5:ENST00000513585.6:ENST00000502635.2:ENST00000510046.1:ENST00000389063.3:ENST00000674880.1:ENST00000504961.1:ENST00000512751.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	44	2	2.03361	2.2357199999999997	2.43783	0.0325854	0.00916404	0.145164	0.0812949
chr12	112062686	112062786	5414952	0	-	0.42	(0.408,0.44]	chr12	517189	9	INTRON	INTRON	NAA25	ENSG00000111300.10	ENST00000261745.9:ENST00000552527.5:ENST00000549711.5:ENST00000551858.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	45	2	1.6306	2.235685	2.84077	0.0544158	0.0132196	0.182272	0.0940535
chr13	27148992	27149092	5566338	0	-	0.52	(0.515,0.57]	chr13	532032	320	INTRON	INTRON	USP12	ENSG00000152484.14	ENST00000282344.11	protein_coding	protein_coding	protein_coding	protein_coding	5	44	2	1.44089	2.23563	3.03037	0.0617046	0.00608732	0.193423	0.0676501
chr17	75377090	75377190	6837512	0	-	0.4	(0.378,0.408]	chr17	675716	439	INTRON	INTRON	GRB2	ENSG00000177885.15	ENST00000316615.9:ENST00000316804.10:ENST00000392562.5:ENST00000392564.5:ENST00000392563.5:ENST00000648046.1:ENST00000578961.5:ENST00000582582.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	72	2	1.80483	2.23563	2.66643	0.0201276	0.00470023	0.121243	0.0600108
chr2	8896152	8896252	1062487	0	-	0.54	(0.515,0.57]	chr2	113359	77	INTRON	INTRON	MBOAT2	ENSG00000143797.12	ENST00000305997.8:ENST00000486484.5:ENST00000477073.5:ENST00000474341.5:ENST00000462696.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	44	2	1.44089	2.23563	3.03037	0.0617046	0.00608732	0.193423	0.0676501
chr11	72097291	72097379	4976962	0	-	0.340909	(0.32,0.35]	chr11	470170	1	UTR3	UTR3:EXON_MRNA:INTRON	LAMTOR1	ENSG00000149357.10	ENST00000545249.5:ENST00000535107.5:ENST00000278671.10:ENST00000544594.5:ENST00000538404.1	protein_coding	protein_coding	protein_coding	protein_coding	5	71	2	1.92705	2.2355650000000002	2.54408	0.0267365	0.00659077	0.123349	0.0737338
chr16	67896060	67896160	6368866	0	+	0.42	(0.408,0.44]	chr16	612023	23	INTRON	INTRON	PSKH1	ENSG00000159792.10	ENST00000291041.6:ENST00000570631.5:ENST00000575198.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	93	2	1.76523	2.235545	2.70586	0.0174785	9.14702e-4	0.10482	0.027804
chr18	9954703	9954801	6873760	0	+	0.336735	(0.32,0.35]	chr18	680907	6	UTR3	UTR3:EXON_MRNA	VAPA	ENSG00000101558.14	ENST00000400000.7	protein_coding	protein_coding	protein_coding	protein_coding	29	274	2	1.00967	2.235515	3.46136	0.0447607	1.43987e-5	0.163255	0.00303221
chr10	22002812	22002912	4578674	0	-	0.42	(0.408,0.44]	chr10	421948	2	SS5_PROX	SS5_PROX:INTRON	DNAJC1	ENSG00000136770.11	ENST00000376980.8:ENST00000476103.3:ENST00000447548.5:ENST00000376946.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	52	2	1.7519	2.235505	2.71911	0.0239555	0.0189489	0.129259	0.108861
chr15	63821328	63821428	6200779	0	-	0.48	(0.476,0.515]	chr15	591445	404	INTRON	INTRON	HERC1	ENSG00000103657.14	ENST00000443617.7:ENST00000561400.1:ENST00000559886.1:ENST00000558532.1:ENST00000560462.1:ENST00000560316.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	37	2	2.06491	2.2354950000000002	2.40608	0.0425709	0.0304733	0.148082	0.143385
chr2	8824454	8824553	1061903	0	-	0.494949	(0.476,0.515]	chr2	113285	5	EXON_MRNA	EXON_MRNA:INTRON	KIDINS220	ENSG00000134313.17	ENST00000569008.2:ENST00000689369.1:ENST00000693394.1:ENST00000689852.1:ENST00000693432.1:ENST00000256707.8:ENST00000687912.1:ENST00000685097.1:ENST00000473731.5:ENST00000687894.1:ENST00000691030.1:ENST00000686906.1:ENST00000488729.5:ENST00000489024.5:ENST00000459813.2:ENST00000692419.1:ENST00000689531.1:ENST00000686179.1:ENST00000692889.1:ENST00000687240.1:ENST00000690607.1:ENST00000319688.5:ENST00000689114.1:ENST00000685274.1:ENST00000693366.1:ENST00000693249.1:ENST00000687526.1:ENST00000685083.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	37	2	2.06491	2.2354950000000002	2.40608	0.0425709	0.0304733	0.148082	0.143385
chr18	36044639	36044738	6963316	0	-	0.393939	(0.378,0.408]	chr18	689076	34	INTRON	INTRON	RPRD1A	ENSG00000141425.18	ENST00000399022.9:ENST00000590898.5:ENST00000357384.8:ENST00000588737.5:ENST00000589050.1:ENST00000592674.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:nonsense_mediated_decay	4	48	2	1.68393	2.23549	2.78705	0.0503034	0.0135539	0.156383	0.101363
chr1	193033654	193033754	612611	0	-	0.31	(0.28,0.32]	chr1	72474	36	INTRON	INTRON	UCHL5	ENSG00000116750.14	ENST00000367455.8:ENST00000367454.6:ENST00000367450.7:ENST00000367451.8:ENST00000367449.5:ENST00000367448.5:ENST00000421683.1	protein_coding	protein_coding	protein_coding	protein_coding	4	64	2	2.18092	2.23545	2.28998	0.0271832	0.0166401	0.123904	0.110511
chr16	23880894	23880994	6324209	0	+	0.44	(0.408,0.44]	chr16	605697	117	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000645517.1:ENST00000498739.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	19	217	2	2.13317	2.23545	2.33773	5.28147e-4	4.7826e-4	0.0211857	0.019819
chr3	143024383	143024483	1529320	0	+	0.28	[0,0.28]	chr3	159392	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	U2SURP	ENSG00000163714.18	ENST00000488497.7:ENST00000473835.7:ENST00000493598.6:ENST00000463563.6:ENST00000488587.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	14	231	2	2.02496	2.23543	2.4459	0.0024744	0.00219698	0.0460748	0.0417893
chr16	22502862	22502961	6322634	0	+	0.414141	(0.408,0.44]	chr16	605439	107	INTRON	INTRON	NPIPB5	ENSG00000243716.11	ENST00000415654.5:ENST00000415833.6:ENST00000546168.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	80	2	1.40381	2.235395	3.06698	0.0521927	8.51999e-4	0.177259	0.0267428
chr2	107729646	107729746	1205846	0	-	0.33	(0.32,0.35]	chr2	128532	120	INTRON	INTRON	LINC01885:ENSG00000286769	ENSG00000237880.2:ENSG00000286769.1	ENST00000654481.1:ENST00000669817.1	lncRNA	lncRNA	lncRNA	lncRNA	21	258	2	1.67661	2.235395	2.79418	0.00401111	1.53333e-4	0.0577862	0.0113158
chr7	105047405	105047505	3374956	0	+	0.38	(0.378,0.408]	chr7	315877	60	INTRON	INTRON	KMT2E	ENSG00000005483.22	ENST00000622386.2:ENST00000257745.9:ENST00000334884.9:ENST00000311117.8:ENST00000478990.5:ENST00000495267.5:ENST00000476671.5:ENST00000667857.1:ENST00000474203.5:ENST00000482560.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	75	2	1.27711	2.235395	3.19368	0.0441401	0.00426861	0.162255	0.0573912
chr19	6745528	6745628	7006731	0	+	0.45	(0.44,0.476]	chr19	695257	1	SS3_PROX	SS3_PROX:INTRON	TRIP10	ENSG00000125733.18	ENST00000600428.5:ENST00000313244.14:ENST00000313285.12:ENST00000600677.5:ENST00000595305.5:ENST00000596758.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	50	2	2.02558	2.23536	2.44514	0.0363567	0.0087381	0.138959	0.0845538
chr3	177062933	177063032	1871084	0	-	0.474747	(0.44,0.476]	chr3	187360	87	INTRON	INTRON	TBL1XR1	ENSG00000177565.18	ENST00000457928.7:ENST00000430069.5:ENST00000673974.1:ENST00000631253.2:ENST00000352800.10:ENST00000422442.6:ENST00000428970.5:ENST00000424913.5:ENST00000437738.5:ENST00000431421.5:ENST00000635794.1:ENST00000630796.2:ENST00000450267.5:ENST00000630833.2:ENST00000431674.5:ENST00000422066.5:ENST00000443315.5:ENST00000627825.2:ENST00000427349.5:ENST00000413084.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	58	2	1.66775	2.23525	2.80275	0.0219883	0.0146513	0.123836	0.0982604
chr16	23949422	23949522	6324895	0	+	0.51	(0.476,0.515]	chr16	605701	557	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000498739.1	protein_coding	protein_coding	protein_coding	protein_coding	3	37	2	1.8388	2.23524	2.63168	0.0564473	0.0237106	0.184423	0.118716
chr10	102152730	102152830	4512504	0	+	0.63	(0.57,1]	chr10	415622	2	SS5_PROX	SS5_PROX:INTRON	NOLC1	ENSG00000166197.17	ENST00000405356.5:ENST00000605788.6:ENST00000464969.6:ENST00000603946.5:ENST00000488254.6:ENST00000461421.5:ENST00000476468.5:ENST00000370007.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	50	2	2.02689	2.235225	2.44356	0.00839052	0.00109465	0.0823837	0.0304174
chr1	31287658	31287757	413199	0	-	0.484848	(0.476,0.515]	chr1	49797	53	INTRON	INTRON	SNRNP40	ENSG00000060688.13	ENST00000263694.9:ENST00000474025.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	90	2	1.26204	2.235125	3.20821	0.0570171	3.05489e-4	0.167723	0.0155972
chr7	87889448	87889547	3346809	0	+	0.535354	(0.515,0.57]	chr7	311868	10	INTRON	INTRON	DBF4	ENSG00000006634.8	ENST00000413643.5:ENST00000265728.6:ENST00000431138.5:ENST00000430279.5:ENST00000498144.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	74	2	2.11724	2.2349949999999996	2.35275	0.0110335	0.00219906	0.0927187	0.0417893
chr16	74570014	74570114	6524961	0	-	0.22	[0,0.28]	chr16	631842	68	INTRON	INTRON	GLG1	ENSG00000090863.12	ENST00000205061.9:ENST00000422840.7:ENST00000447066.6:ENST00000562090.5:ENST00000567951.5:ENST00000627032.2:ENST00000565260.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	136	2	2.17269	2.23498	2.29727	0.0103431	0.00407462	0.0850389	0.0580589
chr17	62040388	62040488	6810631	0	-	0.27	[0,0.28]	chr17	672946	44	INTRON	INTRON	MED13	ENSG00000108510.10	ENST00000397786.7	protein_coding	protein_coding	protein_coding	protein_coding	7	113	2	1.98218	2.23495	2.48772	0.0125761	0.00868679	0.0926667	0.0843099
chr3	6549000	6549100	1356731	0	+	0.41	(0.408,0.44]	chr3	142508	359	INTRON	INTRON	ENSG00000189229	ENSG00000189229.12	ENST00000660158.1:ENST00000433639.1:ENST00000655754.1:ENST00000653839.1:ENST00000662846.1:ENST00000659876.1:ENST00000414438.2:ENST00000658468.1:ENST00000414603.1:ENST00000669512.1:ENST00000667028.1:ENST00000655541.1:ENST00000668643.1:ENST00000671568.1:ENST00000671036.1:ENST00000669798.1:ENST00000655753.1:ENST00000655856.1:ENST00000658398.1:ENST00000661518.1:ENST00000661279.1:ENST00000655495.1:ENST00000663041.1:ENST00000659827.1:ENST00000667716.1:ENST00000662508.1:ENST00000668416.1:ENST00000658133.1:ENST00000659651.1:ENST00000342990.4:ENST00000660054.1:ENST00000671370.1	lncRNA	lncRNA	lncRNA	lncRNA	18	189	2	1.5365	2.234915	2.93333	0.0104916	4.01252e-5	0.0856669	0.00513517
chr6	20441976	20442076	2827850	0	+	0.46	(0.44,0.476]	chr6	265583	19	INTRON	INTRON	E2F3	ENSG00000112242.16	ENST00000346618.8:ENST00000535432.2	protein_coding	protein_coding	protein_coding	protein_coding	11	124	2	1.64354	2.23491	2.82628	0.0157859	1.78564e-4	0.101453	0.0116619
chr22	20518995	20519095	7479462	0	+	0.5	(0.476,0.515]	chr22	762955	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	MED15	ENSG00000099917.17	ENST00000445987.5:ENST00000444094.5:ENST00000414658.5:ENST00000486656.5:ENST00000433831.5:ENST00000432052.5:ENST00000292733.11:ENST00000263205.11:ENST00000477824.5:ENST00000406969.5:ENST00000382974.6:ENST00000441501.5:ENST00000438962.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	69	2	1.50151	2.234875	2.96824	0.054954	9.98194e-4	0.165463	0.0290732
chr9	124742342	124742441	4348926	0	-	0.494949	(0.476,0.515]	chr9	399261	86	INTRON	INTRON	NR6A1	ENSG00000148200.17	ENST00000487099.7:ENST00000373584.7:ENST00000416460.6:ENST00000344523.8	protein_coding	protein_coding	protein_coding	protein_coding	6	69	2	1.50151	2.234875	2.96824	0.054954	9.98194e-4	0.165463	0.0290732
chr1	31259735	31259819	412906	0	-	0.321429	(0.32,0.35]	chr1	49758	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	SNRNP40	ENSG00000060688.13	ENST00000263694.9:ENST00000486941.1:ENST00000489853.1:ENST00000373720.3:ENST00000491106.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	32	430	2	1.95054	2.234865	2.51919	0.00160694	2.58556e-5	0.0365144	0.00400663
chr1	34989819	34989917	419978	0	-	0.489796	(0.476,0.515]	chr1	50548	10	EXON_LNCRNA	EXON_LNCRNA:INTRON	ENSG00000271741:ZMYM6	ENSG00000271741.1:ENSG00000163867.17	ENST00000487874.1:ENST00000357182.9:ENST00000493328.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	76	2	1.77073	2.234795	2.69886	0.0151174	0.00385209	0.108513	0.0542786
chr15	55189885	55189983	6179942	0	-	0.55102	(0.515,0.57]	chr15	589063	32	INTRON	INTRON	RSL24D1	ENSG00000137876.11	ENST00000260443.9:ENST00000569386.2:ENST00000677172.1:ENST00000677147.1:ENST00000562895.2:ENST00000677989.1:ENST00000677730.1:ENST00000677092.1:ENST00000562993.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	32	2	2.03361	2.23475	2.43589	0.0370871	0.0325854	0.145164	0.139194
chr21	31726579	31726679	7437776	0	-	0.54	(0.515,0.57]	chr21	758689	199	INTRON	INTRON	SCAF4	ENSG00000156304.15	ENST00000286835.12:ENST00000399804.5:ENST00000434667.3:ENST00000485790.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	32	2	2.03361	2.23475	2.43589	0.0370871	0.0325854	0.145164	0.139194
chr1	36362158	36362258	423388	0	-	0.4	(0.378,0.408]	chr1	51128	2	SS5_PROX	SS5_PROX:INTRON	STK40	ENSG00000196182.11	ENST00000373130.7:ENST00000373129.7:ENST00000373132.4:ENST00000460417.5:ENST00000473733.5:ENST00000482458.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	52	2	2.05897	2.23467	2.41037	0.0339294	0.0100185	0.134508	0.0880217
chr1	246878600	246878700	681406	0	-	0.39	(0.378,0.408]	chr1	79929	9	INTRON	INTRON	AHCTF1	ENSG00000153207.16	ENST00000648844.2:ENST00000326225.3:ENST00000366508.5:ENST00000470300.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	52	2	2.05897	2.23467	2.41037	0.0339294	0.0100185	0.134508	0.0880217
chr7	148732466	148732565	3444026	0	+	0.454545	(0.44,0.476]	chr7	321178	18	INTRON	INTRON	CUL1	ENSG00000055130.18	ENST00000409469.5:ENST00000662716.1:ENST00000665936.1:ENST00000663044.1:ENST00000602748.5:ENST00000663835.1:ENST00000655324.1:ENST00000662132.1:ENST00000325222.9:ENST00000656001.1:ENST00000666124.1:ENST00000671421.1:ENST00000671397.1:ENST00000662670.1:ENST00000660240.1:ENST00000662975.1:ENST00000660013.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	69	2	1.60467	2.234595	2.86452	0.0411383	0.00159222	0.1451	0.0367961
chr16	21874362	21874461	6461987	0	-	0.525253	(0.515,0.57]	chr16	623467	82	INTRON	INTRON	NPIPB4	ENSG00000185864.18	ENST00000543449.1:ENST00000538859.1	protein_coding	processed_transcript	protein_coding	processed_transcript	24	236	2	2.10956	2.2345550000000003	2.35955	3.58612e-4	1.06234e-4	0.0169207	0.00923713
chr20	47240334	47240433	7348334	0	-	0.545455	(0.515,0.57]	chr20	749270	8	INTRON	INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000467200.6:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000468376.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	32	2	1.86007	2.23453	2.60899	0.0526611	0.0232669	0.178401	0.118148
chr21	14760440	14760539	7430195	0	-	0.545455	(0.515,0.57]	chr21	757888	60	INTRON	INTRON	ENSG00000232884	ENSG00000232884.10	ENST00000673788.1:ENST00000674136.1	lncRNA	lncRNA	lncRNA	lncRNA	3	32	2	1.86007	2.23453	2.60899	0.0526611	0.0232669	0.178401	0.118148
chr1	23042706	23042806	43991	0	+	0.55	(0.515,0.57]	chr1	5258	117	INTRON	INTRON	KDM1A	ENSG00000004487.18	ENST00000692214.1:ENST00000686934.1:ENST00000689853.1:ENST00000465864.2:ENST00000691256.1:ENST00000688122.1:ENST00000692056.1:ENST00000692853.1:ENST00000689366.1:ENST00000686270.1:ENST00000685102.1:ENST00000690627.1:ENST00000686771.1:ENST00000692209.1:ENST00000686339.1:ENST00000691813.1:ENST00000693156.1:ENST00000688235.1:ENST00000692975.1:ENST00000687202.1:ENST00000691682.1:ENST00000691404.1:ENST00000691694.1:ENST00000688680.1:ENST00000356634.7:ENST00000400181.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	59	2	1.68687	2.234475	2.78208	0.0300837	0.00209264	0.129186	0.0424943
chr17	28607571	28607668	6744724	0	-	0.515464	(0.515,0.57]	chr17	662481	20	INTRON	INTRON	RSKR	ENSG00000167524.16	ENST00000577790.2:ENST00000584196.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	5	52	2	1.88259	2.2344150000000003	2.58624	0.0251849	0.00526399	0.133519	0.0633874
chr21	15005361	15005461	7431664	0	-	0.47	(0.44,0.476]	chr21	757978	31	INTRON	INTRON	NRIP1	ENSG00000180530.11	ENST00000400202.5:ENST00000318948.7:ENST00000400199.5:ENST00000638122.1:ENST00000637963.1:ENST00000637630.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	74	2	2.08211	2.234235	2.38636	0.0130715	0.0047296	0.0996047	0.0600445
chr1	75786374	75786449	144614	0	+	0.453333	(0.44,0.476]	chr1	16316	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ACADM:RABGGTB	ENSG00000117054.15:ENSG00000137955.16	ENST00000528016.1:ENST00000496055.5:ENST00000485459.5:ENST00000473406.5:ENST00000370826.3:ENST00000497648.1:ENST00000319942.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	23	263	2	2.13152	2.23408	2.33664	6.42988e-4	1.37815e-4	0.0231685	0.0101084
chr10	69201656	69201750	4445293	0	+	0.446809	(0.44,0.476]	chr10	410138	8	INTRON	INTRON	SUPV3L1	ENSG00000156502.14	ENST00000359655.9	protein_coding	protein_coding	protein_coding	protein_coding	5	51	2	1.49356	2.234035	2.97451	0.0537505	0.00853825	0.180803	0.0780043
chr19	29960956	29961055	7047741	0	+	0.414141	(0.408,0.44]	chr19	702663	25	INTRON	INTRON	URI1	ENSG00000105176.18	ENST00000360605.8:ENST00000570564.5:ENST00000574233.5:ENST00000392271.6:ENST00000574110.5:ENST00000574666.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	73	2	1.96534	2.23402	2.5027	0.0216499	0.00238178	0.11491	0.0449397
chr12	1723937	1724037	5064497	0	+	0.39	(0.378,0.408]	chr12	477866	206	INTRON	INTRON	ADIPOR2	ENSG00000006831.10	ENST00000537545.1:ENST00000357103.5:ENST00000540974.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	59	2	1.36527	2.234005	3.10274	0.0587392	0.00586642	0.189982	0.0668095
chr6	158313337	158313434	3019357	0	+	0.381443	(0.378,0.408]	chr6	281692	10	UTR5	UTR5:EXON_MRNA:INTRON	ENSG00000274023:TULP4	ENSG00000274023.1:ENSG00000130338.13	ENST00000619713.1:ENST00000367097.8:ENST00000367094.6	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	6	59	2	1.36527	2.234005	3.10274	0.0587392	0.00586642	0.189982	0.0668095
chr1	246061464	246061564	676246	0	-	0.47	(0.44,0.476]	chr1	79717	80	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000391836.3:ENST00000464398.1:ENST00000453676.5:ENST00000462422.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	59	2	1.38203	2.2339700000000002	3.08591	0.058781	0.00481262	0.167915	0.0638089
chr15	51910686	51910785	6027963	0	+	0.323232	(0.32,0.35]	chr15	574346	20	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	TMOD3	ENSG00000138594.14	ENST00000308580.12:ENST00000560549.5:ENST00000561438.5:ENST00000560725.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	118	2	2.00211	2.233935	2.46576	0.00445465	0.00423072	0.0610799	0.0572185
chr5	54089652	54089752	2618703	0	-	0.34	(0.32,0.35]	chr5	248841	137	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	14	174	2	1.66125	2.233935	2.80662	0.00788118	4.52142e-4	0.0794495	0.0196769
chr17	80993280	80993380	6689070	0	+	0.58	(0.57,1]	chr17	653622	9	INTRON	INTRON	CHMP6	ENSG00000176108.9	ENST00000572525.5:ENST00000325167.9	protein_coding	protein_coding	protein_coding	protein_coding	5	29	2	1.79978	2.233895	2.66801	0.0199509	0.0169968	0.110899	0.109608
chr1	171497398	171497498	253333	0	+	0.28	[0,0.28]	chr1	30096	113	INTRON	INTRON	PRRC2C	ENSG00000117523.18	ENST00000647382.2:ENST00000367742.7:ENST00000476522.5:ENST00000338920.8:ENST00000467601.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	14	244	2	1.90599	2.233815	2.56164	0.0120023	2.17542e-4	0.0901629	0.012933
chr1	1263806	1263886	359092	0	-	0.475	(0.44,0.476]	chr1	41458	4	SS3_PROX	SS3_PROX:INTRON	UBE2J2	ENSG00000160087.21	ENST00000450390.6:ENST00000349431.11:ENST00000347370.6:ENST00000400929.6:ENST00000464036.5:ENST00000360466.6:ENST00000400930.8:ENST00000473215.5:ENST00000435198.5:ENST00000509720.5:ENST00000491779.5:ENST00000466752.5:ENST00000503294.5:ENST00000477894.5:ENST00000422076.5:ENST00000502382.1:ENST00000461142.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	70	2	1.65297	2.233795	2.81462	0.0331814	0.00247064	0.145918	0.0446195
chr11	86002965	86003065	5014167	0	-	0.43	(0.408,0.44]	chr11	472965	2	SS5_PROX	SS5_PROX:INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000630913.2:ENST00000528398.5:ENST00000356360.9:ENST00000534412.5:ENST00000533350.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	24	268	2	2.19098	2.2337800000000003	2.27658	0.00112676	8.13827e-5	0.030721	0.00755207
chr1	236796037	236796137	342501	0	+	0.43	(0.408,0.44]	chr1	39809	3	SS5_PROX	SS5_PROX:INTRON	MTR	ENSG00000116984.15	ENST00000680454.1:ENST00000366577.10:ENST00000674797.2:ENST00000652435.1:ENST00000679569.1:ENST00000650888.1:ENST00000463959.1:ENST00000535889.6:ENST00000651455.1:ENST00000681102.1:ENST00000679842.1:ENST00000681177.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	101	2	1.95554	2.23376	2.51198	0.00485149	0.00288187	0.0640618	0.0475859
chr7	148823460	148823560	3670144	0	-	0.33	(0.32,0.35]	chr7	340580	27	INTRON	INTRON	EZH2	ENSG00000106462.12	ENST00000683292.1:ENST00000320356.7:ENST00000492143.5:ENST00000478654.5:ENST00000350995.6:ENST00000460911.5:ENST00000683744.1:ENST00000682317.1:ENST00000682263.1:ENST00000684300.1:ENST00000476773.5:ENST00000483967.5:ENST00000498186.5:ENST00000483012.1:ENST00000682401.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	17	211	2	1.87896	2.23376	2.58856	0.00206912	6.96512e-4	0.0422059	0.024224
chr2	55040416	55040516	1121309	0	-	0.38	(0.378,0.408]	chr2	120163	118	INTRON	INTRON	RTN4	ENSG00000115310.19	ENST00000404909.5:ENST00000394611.6:ENST00000317610.11:ENST00000357732.8:ENST00000337526.11:ENST00000357376.7:ENST00000405240.5:ENST00000438462.1:ENST00000427710.5	protein_coding	protein_coding	protein_coding	protein_coding	11	121	2	1.92997	2.2337499999999997	2.53753	0.00301953	0.00271682	0.0507747	0.0467523
chr22	28618652	28618752	7572322	0	-	0.36	(0.35,0.378]	chr22	774287	1757	INTRON	INTRON	TTC28	ENSG00000100154.15	ENST00000397906.7	protein_coding	protein_coding	protein_coding	protein_coding	3	41	2	1.81767	2.233735	2.6498	0.0640429	0.0210137	0.177882	0.122348
chr1	184733760	184733857	600974	0	-	0.494845	(0.476,0.515]	chr1	71654	9	EXON_MRNA	EXON_MRNA:INTRON	EDEM3	ENSG00000116406.20	ENST00000318130.13:ENST00000367512.8:ENST00000689766.1:ENST00000686047.1:ENST00000687113.1:ENST00000686225.1:ENST00000685596.1:ENST00000685249.1:ENST00000692170.1:ENST00000689946.1:ENST00000690028.1:ENST00000474725.5:ENST00000693477.1:ENST00000466606.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	78	2	2.10246	2.2337300000000004	2.365	0.0128901	0.00381269	0.0926667	0.0562562
chr11	590688	590785	4719717	0	+	0.463918	(0.44,0.476]	chr11	436176	29	INTRON	INTRON	PHRF1	ENSG00000070047.13	ENST00000264555.10:ENST00000416188.3:ENST00000534320.5:ENST00000413872.6:ENST00000533464.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	60	2	2.1762	2.23373	2.29126	0.0165638	0.0092251	0.102621	0.0855292
chr1	31359941	31360041	61799	0	+	0.46	(0.44,0.476]	chr1	7865	106	INTRON	INTRON	ZCCHC17	ENSG00000121766.16	ENST00000618216.4:ENST00000546109.5:ENST00000616393.4:ENST00000616859.4:ENST00000615916.4:ENST00000373714.5:ENST00000344147.10:ENST00000627541.1	protein_coding	protein_coding	protein_coding	protein_coding	3	37	2	2.00609	2.23372	2.46135	0.0374637	0.0360127	0.152355	0.140008
chr1	52539842	52539942	458438	0	-	0.45	(0.44,0.476]	chr1	55111	8	INTRON	INTRON	TUT4	ENSG00000134744.14	ENST00000371544.7:ENST00000257177.9:ENST00000528642.5:ENST00000484723.6:ENST00000473856.5:ENST00000355809.4:ENST00000470626.1:ENST00000524582.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	37	2	2.00609	2.23372	2.46135	0.0374637	0.0360127	0.152355	0.140008
chr17	28045424	28045523	6582546	0	+	0.474747	(0.44,0.476]	chr17	639830	17	INTRON	INTRON	NLK	ENSG00000087095.13	ENST00000583517.1:ENST00000407008.8:ENST00000582037.2:ENST00000496808.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	37	2	2.00609	2.23372	2.46135	0.0374637	0.0360127	0.152355	0.140008
chr3	52415185	52415284	1428154	0	+	0.474747	(0.44,0.476]	chr3	150785	2	INTRON	INTRON	PHF7	ENSG00000010318.22	ENST00000327906.8:ENST00000347025.6:ENST00000614886.4:ENST00000472337.5:ENST00000461861.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	37	2	2.00609	2.23372	2.46135	0.0374637	0.0360127	0.152355	0.140008
chr3	121642028	121642127	1798589	0	-	0.444444	(0.44,0.476]	chr3	180639	44	INTRON	INTRON	HCLS1	ENSG00000180353.11	ENST00000314583.8:ENST00000473883.5:ENST00000428394.6:ENST00000495491.5:ENST00000464274.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	37	2	2.00609	2.23372	2.46135	0.0374637	0.0360127	0.152355	0.140008
chr6	57156723	57156822	2878745	0	+	0.444444	(0.44,0.476]	chr6	273319	23	INTRON	INTRON	ZNF451	ENSG00000112200.17	ENST00000357489.7:ENST00000370706.9:ENST00000504603.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	37	2	2.00609	2.23372	2.46135	0.0374637	0.0360127	0.152355	0.140008
chr8	94846273	94846372	3800357	0	+	0.464646	(0.44,0.476]	chr8	352383	34	INTRON	INTRON	INTS8	ENSG00000164941.14	ENST00000523731.6:ENST00000524333.5:ENST00000523321.5:ENST00000343161.8:ENST00000523206.5:ENST00000520526.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	37	2	2.00609	2.23372	2.46135	0.0374637	0.0360127	0.152355	0.140008
chr3	152297507	152297607	1535270	0	+	0.48	(0.476,0.515]	chr3	159981	274	INTRON	INTRON	MBNL1	ENSG00000152601.18	ENST00000477171.1:ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000461436.1:ENST00000495875.6:ENST00000324210.10:ENST00000493459.5:ENST00000459747.1:ENST00000460591.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	60	2	1.93059	2.23365	2.53671	0.023762	0.00624027	0.118822	0.0718843
chr20	62925732	62925831	7362447	0	-	0.515152	(0.476,0.515]	chr20	751210	110	INTRON	INTRON	DIDO1	ENSG00000101191.17	ENST00000266070.8:ENST00000395343.6:ENST00000395340.5:ENST00000370371.8:ENST00000370368.5:ENST00000354665.8	protein_coding	protein_coding	protein_coding	protein_coding	6	72	2	2.01618	2.233625	2.45107	0.0180082	0.00301722	0.106756	0.0507519
chr1	110372216	110372315	182674	0	+	0.252525	[0,0.28]	chr1	20258	22	EXON_LNCRNA	EXON_LNCRNA:INTRON	LAMTOR5-AS1:ENSG00000273373	ENSG00000224699.10:ENSG00000273373.1	ENST00000626572.2:ENST00000609909.1	lncRNA	lncRNA	lncRNA	lncRNA	7	123	2	1.66263	2.23362	2.80461	0.0436724	9.57163e-4	0.148885	0.0284484
chr11	108012763	108012862	4855767	0	+	0.474747	(0.44,0.476]	chr11	452870	30	INTRON	INTRON	CUL5	ENSG00000166266.14	ENST00000393094.7:ENST00000532064.5:ENST00000526303.1:ENST00000531427.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	37	2	1.93084	2.23362	2.5364	0.0443175	0.0309324	0.162302	0.13151
chr22	40140638	40140738	7517808	0	+	0.46	(0.44,0.476]	chr22	768097	144	INTRON	INTRON	TNRC6B	ENSG00000100354.21	ENST00000301923.13:ENST00000441751.5:ENST00000402203.5	protein_coding	protein_coding	protein_coding	protein_coding	3	37	2	1.93084	2.23362	2.5364	0.0443175	0.0309324	0.162302	0.13151
chr4	39729133	39729233	1953302	0	+	0.46	(0.44,0.476]	chr4	195630	304	INTRON	INTRON	UBE2K	ENSG00000078140.14	ENST00000510934.5:ENST00000261427.10:ENST00000438068.6:ENST00000513231.5:ENST00000503368.5:ENST00000445950.2:ENST00000510719.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	37	2	1.93084	2.23362	2.5364	0.0443175	0.0309324	0.162302	0.13151
chr6	57106450	57106549	2878222	0	+	0.474747	(0.44,0.476]	chr6	273248	45	UTR3	UTR3:EXON_MRNA:INTRON	ZNF451	ENSG00000112200.17	ENST00000515290.5:ENST00000510483.5:ENST00000357489.7:ENST00000370708.8:ENST00000370702.5:ENST00000444273.6:ENST00000370711.9:ENST00000370706.9:ENST00000491832.6:ENST00000502749.1:ENST00000504603.1:ENST00000509071.5:ENST00000509251.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	37	2	1.93084	2.23362	2.5364	0.0443175	0.0309324	0.162302	0.13151
chr1	54360613	54360712	463303	0	-	0.40404	(0.378,0.408]	chr1	55784	39	INTRON	INTRON	SSBP3	ENSG00000157216.16	ENST00000610401.5:ENST00000357475.9:ENST00000371319.8:ENST00000417664.7:ENST00000533946.6:ENST00000371320.8:ENST00000525990.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	52	2	2.11194	2.233605	2.35527	0.0292534	0.0121511	0.128055	0.0963966
chr15	56947081	56947181	6032396	0	+	0.4	(0.378,0.408]	chr15	574663	256	INTRON	INTRON	TCF12	ENSG00000140262.18	ENST00000438423.6:ENST00000267811.9:ENST00000333725.10:ENST00000560190.5:ENST00000559609.5:ENST00000558908.5:ENST00000557843.5:ENST00000557947.5:ENST00000561152.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	52	2	2.11194	2.233605	2.35527	0.0292534	0.0121511	0.128055	0.0963966
chr20	35033742	35033840	7332309	0	-	0.520408	(0.515,0.57]	chr20	746931	35	INTRON	INTRON	TRPC4AP	ENSG00000100991.12	ENST00000252015.3:ENST00000451813.6	protein_coding	protein_coding	protein_coding	protein_coding	6	51	2	1.77888	2.233605	2.68833	0.0184931	0.0139834	0.108861	0.10247
chr15	52030769	52030869	6029138	0	+	0.5	(0.476,0.515]	chr15	574427	25	INTRON	INTRON	MAPK6	ENSG00000069956.14	ENST00000560802.1:ENST00000691380.1:ENST00000558063.5:ENST00000560254.1:ENST00000681888.1:ENST00000261845.7:ENST00000680066.1:ENST00000680777.1:ENST00000558100.1:ENST00000680652.1:ENST00000558841.1:ENST00000558891.1:ENST00000560774.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	139	2	1.97669	2.2336	2.49051	0.0053159	3.16865e-4	0.0639031	0.0159645
chr12	76834972	76835072	5174576	0	+	0.32	(0.28,0.32]	chr12	490143	61	INTRON	INTRON	ZDHHC17	ENSG00000186908.15	ENST00000426126.7	protein_coding	protein_coding	protein_coding	protein_coding	8	108	2	1.43487	2.2335450000000003	3.03222	0.0467227	9.72587e-4	0.151745	0.0287313
chr20	50517386	50517486	7285984	0	+	0.46	(0.44,0.476]	chr20	741241	64	INTRON	INTRON	PTPN1	ENSG00000196396.10	ENST00000541713.5:ENST00000371621.5	protein_coding	protein_coding	protein_coding	protein_coding	6	69	2	1.68545	2.23337	2.78129	0.0322071	0.00229634	0.132543	0.0439319
chr21	33523725	33523819	7441197	0	-	0.521277	(0.515,0.57]	chr21	759441	11	INTRON	INTRON	GART	ENSG00000159131.17	ENST00000381839.7:ENST00000381831.7:ENST00000424203.5:ENST00000381815.9:ENST00000460305.1:ENST00000467575.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	88	2	1.9706	2.2333	2.496	0.00469345	0.00225531	0.0600108	0.0436331
chr8	60690885	60690985	3759013	0	+	0.48	(0.476,0.515]	chr8	349560	107	INTRON	INTRON	CHD7	ENSG00000171316.13	ENST00000423902.7:ENST00000695853.1:ENST00000695849.1:ENST00000695848.1:ENST00000526846.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	50	2	1.92984	2.233275	2.53671	0.0466474	0.00624027	0.151522	0.0718843
chr11	120364828	120364928	4876484	0	+	0.49	(0.476,0.515]	chr11	455798	272	INTRON	INTRON	ARHGEF12	ENSG00000196914.9	ENST00000397843.7:ENST00000356641.7	protein_coding	protein_coding	protein_coding	protein_coding	5	51	2	1.63962	2.233175	2.82673	0.0346854	0.0134403	0.148144	0.0946278
chr17	49829878	49829977	6625749	0	+	0.515152	(0.476,0.515]	chr17	646809	25	UTR3	UTR3:EXON_MRNA	KAT7	ENSG00000136504.13	ENST00000259021.9	protein_coding	protein_coding	protein_coding	protein_coding	7	77	2	1.52755	2.23307	2.93859	0.0355377	0.00143107	0.151404	0.0340925
chr13	113185953	113186051	5651822	0	-	0.44898	(0.44,0.476]	chr13	538587	5	EXON_LNCRNA	EXON_LNCRNA:SS3_PROX:INTRON	PCID2	ENSG00000126226.22	ENST00000337344.9:ENST00000622406.4:ENST00000375479.6:ENST00000375477.5:ENST00000246505.9:ENST00000375459.5:ENST00000493650.5:ENST00000375457.2:ENST00000473462.5:ENST00000475433.5:ENST00000480971.5:ENST00000484641.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	138	2	2.15426	2.2327399999999997	2.31122	0.00372059	5.48676e-4	0.0535094	0.0213049
chr8	129336641	129336741	4058625	0	-	0.48	(0.476,0.515]	chr8	369539	330	INTRON	INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000657400.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1	lncRNA	lncRNA	lncRNA	lncRNA	6	73	2	2.11679	2.23273	2.34867	0.0115627	0.00539703	0.0962115	0.0644048
chr4	70969530	70969630	1971180	0	+	0.35	(0.32,0.35]	chr4	197591	2	SS3_PROX	SS3_PROX:INTRON	MOB1B	ENSG00000173542.9	ENST00000502869.5:ENST00000509041.5:ENST00000309395.7:ENST00000396051.2:ENST00000511449.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	52	2	1.83315	2.232625	2.6321	0.0313348	0.0268	0.144381	0.123349
chr13	52430864	52430964	5599133	0	-	0.31	(0.28,0.32]	chr13	535333	16	INTRON	INTRON	VPS36	ENSG00000136100.14	ENST00000650274.1:ENST00000611132.4:ENST00000378060.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	47	2	2.13651	2.23261	2.32871	0.0581621	0.0265696	0.167723	0.134088
chr19	55246476	55246576	7213682	0	-	0.32	(0.28,0.32]	chr19	732796	2	SS5_PROX	SS5_PROX:INTRON	PPP6R1	ENSG00000105063.19	ENST00000412770.7:ENST00000587283.5:ENST00000592242.1	protein_coding	protein_coding	protein_coding	protein_coding	3	47	2	2.13651	2.23261	2.32871	0.0581621	0.0265696	0.167723	0.134088
chr7	6403871	6403967	3273324	0	+	0.302083	(0.28,0.32]	chr7	304346	16	UTR3	UTR3:EXON_MRNA	RAC1	ENSG00000136238.19	ENST00000348035.9	protein_coding	protein_coding	protein_coding	protein_coding	3	47	2	2.13651	2.23261	2.32871	0.0581621	0.0265696	0.167723	0.134088
chr10	63263850	63263950	4633366	0	-	0.47	(0.44,0.476]	chr10	426215	435	INTRON	INTRON	JMJD1C	ENSG00000171988.20	ENST00000399262.7:ENST00000402544.5:ENST00000542921.5:ENST00000469152.5:ENST00000489372.4:ENST00000633035.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	90	2	1.4317	2.2326	3.0335	0.0304668	9.65686e-4	0.143385	0.0282401
chr1	29174288	29174388	410368	0	-	0.33	(0.32,0.35]	chr1	49421	9	INTRON	INTRON	SRSF4	ENSG00000116350.18	ENST00000373795.7:ENST00000691479.1:ENST00000466448.4:ENST00000605204.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	28	342	2	1.92506	2.23251	2.53996	6.99873e-4	2.81276e-4	0.0241881	0.015437
chr3	177156781	177156880	1872039	0	-	0.40404	(0.378,0.408]	chr3	187422	207	INTRON	INTRON	TBL1XR1	ENSG00000177565.18	ENST00000457928.7:ENST00000430069.5:ENST00000673974.1:ENST00000352800.10:ENST00000422442.6:ENST00000428970.5:ENST00000424913.5:ENST00000437738.5:ENST00000431421.5:ENST00000635794.1:ENST00000630796.2:ENST00000450267.5:ENST00000630833.2:ENST00000431674.5:ENST00000422066.5:ENST00000443315.5:ENST00000627825.2:ENST00000427349.5:ENST00000413084.5:ENST00000637137.1:ENST00000491623.2:ENST00000637544.1:ENST00000636187.1:ENST00000636912.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	59	2	1.45934	2.23251	3.00568	0.0442931	0.00811866	0.162302	0.0766625
chr17	82914743	82914841	6695878	0	+	0.510204	(0.476,0.515]	chr17	655036	7	INTRON	INTRON	TBCD	ENSG00000141556.22	ENST00000682479.1:ENST00000682722.1:ENST00000684464.1:ENST00000684544.1:ENST00000681983.1:ENST00000684361.1:ENST00000683184.1:ENST00000683282.1:ENST00000684408.1:ENST00000355528.9:ENST00000683444.1:ENST00000684776.1:ENST00000683041.1:ENST00000684760.1:ENST00000684349.1:ENST00000682213.1:ENST00000539345.6:ENST00000684000.1:ENST00000684188.1:ENST00000684429.1:ENST00000682610.1:ENST00000683821.1:ENST00000682654.1:ENST00000576160.6:ENST00000571712.5:ENST00000576996.5:ENST00000683584.1:ENST00000682099.1:ENST00000684559.1:ENST00000576760.5:ENST00000683839.1:ENST00000574975.5:ENST00000572953.5:ENST00000571796.5:ENST00000682315.1:ENST00000574422.1:ENST00000576677.6:ENST00000571618.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	61	2	2.05154	2.23241	2.41328	0.0336015	0.00355364	0.134145	0.0547657
chr4	1993120	1993219	2095891	0	-	0.414141	(0.408,0.44]	chr4	207403	6	INTRON	INTRON	NELFA	ENSG00000185049.16	ENST00000542778.5:ENST00000382882.9:ENST00000333877.8:ENST00000431323.6:ENST00000455762.5:ENST00000421397.5:ENST00000411649.3:ENST00000443203.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	93	2	1.60905	2.232385	2.85572	0.02971	4.26582e-4	0.129022	0.0184578
chr13	79353324	79353424	5625866	0	-	0.29	(0.28,0.32]	chr13	536600	1	SS3_PROX	SS3_PROX:INTRON	RBM26	ENSG00000139746.16	ENST00000438737.3:ENST00000438724.5:ENST00000622611.4:ENST00000267229.11	protein_coding	protein_coding	protein_coding	protein_coding	3	47	2	1.83771	2.232285	2.62686	0.0591725	0.0289217	0.189982	0.1274
chr5	6736109	6736209	2316062	0	+	0.53	(0.515,0.57]	chr5	224267	206	INTRON	INTRON	TENT4A	ENSG00000112941.14	ENST00000230859.8:ENST00000515721.1:ENST00000631941.2	protein_coding	protein_coding	protein_coding	protein_coding	6	61	2	2.15051	2.232225	2.31394	0.0238113	0.00231716	0.118889	0.0442594
chr9	135957484	135957582	4372533	0	-	0.561224	(0.515,0.57]	chr9	402553	17	INTRON	INTRON	UBAC1	ENSG00000130560.9	ENST00000371756.4:ENST00000478485.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	61	2	2.15051	2.232225	2.31394	0.0238113	0.00231716	0.118889	0.0442594
chr3	143003655	143003755	1529093	0	+	0.35	(0.32,0.35]	chr3	159324	9	INTRON	INTRON	U2SURP	ENSG00000163714.18	ENST00000600150.5:ENST00000488497.7:ENST00000493782.5:ENST00000473835.7:ENST00000461591.5:ENST00000493598.6:ENST00000463563.6:ENST00000470400.5:ENST00000465175.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	129	2	1.77253	2.232165	2.6918	0.0271031	2.30431e-4	0.123904	0.0133928
chr1	246879599	246879699	681416	0	-	0.47	(0.44,0.476]	chr1	79929	19	INTRON	INTRON	AHCTF1	ENSG00000153207.16	ENST00000648844.2:ENST00000326225.3:ENST00000366508.5:ENST00000470300.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	50	2	1.96602	2.232125	2.49823	0.0426807	0.00718224	0.148082	0.0756118
chr8	123812704	123812802	3852406	0	+	0.397959	(0.378,0.408]	chr8	355029	1	UTR3	UTR3:EXON_MRNA	FAM91A1	ENSG00000176853.16	ENST00000334705.12:ENST00000519721.5:ENST00000518333.1:ENST00000518976.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	39	2	2.2259	2.232105	2.23831	0.0662381	0.0179575	0.181924	0.114265
chr1	31354359	31354458	61743	0	+	0.373737	(0.35,0.378]	chr1	7865	50	INTRON	INTRON	ZCCHC17	ENSG00000121766.16	ENST00000618216.4:ENST00000546109.5:ENST00000616393.4:ENST00000616859.4:ENST00000615916.4:ENST00000373714.5:ENST00000344147.10:ENST00000627541.1	protein_coding	protein_coding	protein_coding	protein_coding	2	30	2	2.1617	2.232095	2.30249	0.0771502	0.0519726	0.196285	0.176696
chr2	39104642	39104742	1102174	0	-	0.36	(0.35,0.378]	chr2	118304	63	INTRON	INTRON	SOS1	ENSG00000115904.15	ENST00000692089.1:ENST00000402219.8:ENST00000690876.1:ENST00000395038.6:ENST00000691229.1:ENST00000689668.1:ENST00000690679.1:ENST00000461545.2:ENST00000451331.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	30	2	2.1617	2.232095	2.30249	0.0771502	0.0519726	0.196285	0.176696
chr21	36323689	36323788	7403722	0	+	0.373737	(0.35,0.378]	chr21	754279	30	INTRON	INTRON	MORC3	ENSG00000159256.13	ENST00000492336.5:ENST00000400485.6:ENST00000487909.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	30	2	2.1617	2.232095	2.30249	0.0771502	0.0519726	0.196285	0.176696
chr7	127907712	127907812	3404974	0	+	0.36	(0.35,0.378]	chr7	318161	25	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000465900.5:ENST00000486037.1:ENST00000484767.5:ENST00000492840.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	30	2	2.1617	2.232095	2.30249	0.0771502	0.0519726	0.196285	0.176696
chr9	108919549	108919649	4310642	0	-	0.36	(0.35,0.378]	chr9	396141	2	SS3_PROX	SS3_PROX:INTRON	ELP1	ENSG00000070061.16	ENST00000675765.1:ENST00000374647.10:ENST00000675078.1:ENST00000674948.1:ENST00000676121.1:ENST00000676429.1:ENST00000674704.1:ENST00000674938.1:ENST00000675602.1:ENST00000675215.1:ENST00000676044.1:ENST00000675979.1:ENST00000675325.1:ENST00000495759.6:ENST00000675893.1:ENST00000675943.1:ENST00000675535.1:ENST00000674890.1:ENST00000675233.1:ENST00000676086.1:ENST00000674836.1:ENST00000675406.1:ENST00000675748.1:ENST00000675400.1:ENST00000676237.1:ENST00000675825.1:ENST00000676424.1:ENST00000675647.1:ENST00000675877.1:ENST00000676416.1:ENST00000675052.1:ENST00000674535.1:ENST00000537196.1:ENST00000675566.1:ENST00000675507.1:ENST00000675727.1:ENST00000675711.1:ENST00000675458.1:ENST00000675335.1:ENST00000675321.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	30	2	2.1617	2.232095	2.30249	0.0771502	0.0519726	0.196285	0.176696
chr19	68957	69055	7108509	0	-	0.255102	[0,0.28]	chr19	713621	21	INTRON	INTRON	WASH5P	ENSG00000282458.1	ENST00000632506.1:ENST00000633703.1:ENST00000631796.1:ENST00000632089.1:ENST00000631994.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	5	88	2	2.06426	2.232085	2.39991	0.0168952	0.0163416	0.110899	0.101571
chr11	482971	483070	4719234	0	+	0.464646	(0.44,0.476]	chr11	436026	25	INTRON	INTRON	PTDSS2	ENSG00000174915.12	ENST00000532614.5:ENST00000308020.6:ENST00000531520.5:ENST00000526878.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	51	2	1.60176	2.2320349999999998	2.86231	0.0389597	0.012214	0.160861	0.0910127
chr5	146216788	146216888	2514246	0	+	0.47	(0.44,0.476]	chr5	240152	126	INTRON	INTRON	ENSG00000275740:RBM27	ENSG00000275740.1:ENSG00000091009.8	ENST00000506502.2:ENST00000265271.7	protein_coding	protein_coding	protein_coding	protein_coding	5	51	2	1.60176	2.2320349999999998	2.86231	0.0389597	0.012214	0.160861	0.0910127
chr15	30647911	30648008	5992496	0	+	0.340206	(0.32,0.35]	chr15	569756	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ARHGAP11B:ENSG00000284906:ENSG00000285035	ENSG00000285077.3:ENSG00000284906.3:ENSG00000285035.2	ENST00000428041.4:ENST00000693711.1:ENST00000685924.1:ENST00000563110.6:ENST00000642399.2:ENST00000566548.5	protein_coding	protein_coding	protein_coding:transcribed_unprocessed_pseudogene	protein_coding:nonsense_mediated_decay:processed_transcript:transcribed_unprocessed_pseudogene	17	233	2	2.10249	2.23203	2.36157	0.00114518	6.93453e-4	0.0311709	0.0241832
chr6	159779794	159779890	3254593	0	-	0.375	(0.35,0.378]	chr6	302507	1	SSB_ADJ	SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TCP1	ENSG00000120438.12	ENST00000321394.12:ENST00000544255.5:ENST00000420894.6:ENST00000392168.6:ENST00000546204.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	80	2	1.4414	2.23201	3.02262	0.0629423	0.00119456	0.196658	0.0315806
chr13	63980873	63980973	5605675	0	-	0.41	(0.408,0.44]	chr13	535562	1268	INTRON	INTRON	LINC00355	ENSG00000227674.3	ENST00000650541.1	lncRNA	lncRNA	lncRNA	lncRNA	4	51	2	1.81572	2.232005	2.64829	0.0626779	0.00400062	0.175915	0.057767
chr1	161780640	161780736	235992	0	+	0.447917	(0.44,0.476]	chr1	28527	16	INTRON	INTRON	ATF6	ENSG00000118217.7	ENST00000680688.1:ENST00000679853.1:ENST00000681738.1:ENST00000681801.1:ENST00000681779.1:ENST00000367942.4:ENST00000681001.1:ENST00000679886.1:ENST00000681169.1:ENST00000681492.1:ENST00000680481.1:ENST00000680180.1:ENST00000681187.1:ENST00000680462.1:ENST00000680633.1:ENST00000681557.1:ENST00000681912.1:ENST00000679833.1:ENST00000681541.1:ENST00000681036.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	51	2	1.77101	2.2319899999999997	2.69297	0.0693975	0.00333494	0.184298	0.0528877
chr1	2275324	2275424	2637	0	+	0.67	(0.57,1]	chr1	557	269	INTRON	INTRON	SKI	ENSG00000157933.10	ENST00000378536.5:ENST00000508416.1:ENST00000478223.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	24	2	1.67986	2.231975	2.78409	0.0496395	0.0116033	0.174685	0.0889104
chr17	4897674	4897770	6550195	0	+	0.614583	(0.57,1]	chr17	635700	5	UTR3	UTR3:EXON_MRNA	MINK1	ENSG00000141503.17	ENST00000355280.11:ENST00000572330.5:ENST00000347992.11:ENST00000574453.5:ENST00000571207.5:ENST00000574871.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	24	2	1.67986	2.231975	2.78409	0.0496395	0.0116033	0.174685	0.0889104
chr7	129047984	129048084	3636512	0	-	0.5	(0.476,0.515]	chr7	338148	59	INTRON	INTRON	TNPO3	ENSG00000064419.14	ENST00000627585.2:ENST00000265388.10:ENST00000471234.5:ENST00000482320.5:ENST00000471166.1	protein_coding	protein_coding	protein_coding	protein_coding	11	123	2	1.91154	2.2319500000000003	2.55236	0.0043021	0.00104106	0.0599409	0.0293739
chr9	124742541	124742641	4348928	0	-	0.4	(0.378,0.408]	chr9	399261	88	INTRON	INTRON	NR6A1	ENSG00000148200.17	ENST00000487099.7:ENST00000373584.7:ENST00000416460.6:ENST00000344523.8	protein_coding	protein_coding	protein_coding	protein_coding	7	86	2	2.22335	2.231915	2.24048	0.00867536	0.00388279	0.0787771	0.0567196
chr15	93000840	93000940	6104753	0	+	0.46	(0.44,0.476]	chr15	581611	2	SS5_PROX	SS5_PROX:INTRON	CHD2	ENSG00000173575.22	ENST00000626874.2:ENST00000394196.9:ENST00000636306.1:ENST00000625662.2:ENST00000629104.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	50	2	2.19078	2.23191	2.27304	0.0226089	0.0158915	0.117489	0.109464
chr16	54358	54458	6271299	0	+	0.52	(0.515,0.57]	chr16	598265	3	SS5_PROX	SS5_PROX:INTRON	SNRNP25	ENSG00000161981.11	ENST00000293861.8:ENST00000383018.7:ENST00000397876.6:ENST00000417493.1:ENST00000493672.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	39	2	1.63184	2.23186	2.83188	0.0545832	0.0108207	0.165292	0.0920575
chr6	57138431	57138529	2878552	0	+	0.520408	(0.515,0.57]	chr6	273283	32	INTRON	INTRON	ZNF451	ENSG00000112200.17	ENST00000357489.7:ENST00000444273.6:ENST00000370706.9:ENST00000491832.6:ENST00000502749.1:ENST00000504603.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	49	2	1.49552	2.23183	2.96814	0.0385038	0.00756432	0.159277	0.0749063
chr8	23557108	23557208	3715381	0	+	0.5	(0.476,0.515]	chr8	345227	135	INTRON	INTRON	SLC25A37	ENSG00000147454.14	ENST00000519973.6:ENST00000290075.10:ENST00000417331.6:ENST00000518881.5:ENST00000520654.1:ENST00000523930.1:ENST00000523883.5:ENST00000517923.1:ENST00000520949.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	94	2	2.09066	2.231805	2.37295	0.00772252	0.00193884	0.0756858	0.0409025
chr14	101869948	101870047	5819595	0	+	0.373737	(0.35,0.378]	chr14	551879	127	INTRON	INTRON	PPP2R5C	ENSG00000078304.20	ENST00000694906.1:ENST00000422945.6:ENST00000328724.9:ENST00000350249.7:ENST00000557621.5:ENST00000556307.5:ENST00000553730.5:ENST00000334743.9:ENST00000445439.7:ENST00000557095.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	92	2	2.1052	2.23179	2.35838	0.00818462	0.00468156	0.0768456	0.0631419
chr4	78784409	78784509	1981465	0	+	0.37	(0.35,0.378]	chr4	198463	73	INTRON	INTRON	BMP2K	ENSG00000138756.19	ENST00000389010.7:ENST00000502613.3:ENST00000502871.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	92	2	2.1052	2.23179	2.35838	0.00818462	0.00468156	0.0768456	0.0631419
chr12	110498519	110498619	5409946	0	-	0.34	(0.32,0.35]	chr12	516585	3	SS5_PROX	SS5_PROX:INTRON	VPS29	ENSG00000111237.19	ENST00000549578.6:ENST00000360579.11:ENST00000621131.4:ENST00000552130.6:ENST00000447578.6:ENST00000546588.1:ENST00000549970.5:ENST00000548259.1:ENST00000553128.5:ENST00000551655.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	43	2	2.01768	2.2317400000000003	2.4458	0.0425977	0.0361337	0.152563	0.148082
chr21	9114583	9114683	7426485	0	-	0.33	(0.32,0.35]	chr21	757579	263	INTRON	INTRON	TEKT4P2	ENSG00000188681.12	ENST00000690061.1:ENST00000689141.1:ENST00000688310.1:ENST00000687537.1:ENST00000690096.1:ENST00000687888.1:ENST00000690389.1:ENST00000684989.1:ENST00000416067.6:ENST00000693307.1:ENST00000692383.1:ENST00000685666.1:ENST00000688451.1:ENST00000691190.1:ENST00000685532.1:ENST00000687488.1:ENST00000690713.1:ENST00000691834.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	3	43	2	2.01768	2.2317400000000003	2.4458	0.0425977	0.0361337	0.152563	0.148082
chrX	119621945	119622045	7873191	0	-	0.33	(0.32,0.35]	chrX	801798	15	INTRON	INTRON	SEPTIN6	ENSG00000125354.24	ENST00000360156.11:ENST00000354228.8:ENST00000460411.5:ENST00000489216.5:ENST00000354416.7:ENST00000394610.7:ENST00000343984.5:ENST00000467310.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	43	2	2.01768	2.2317400000000003	2.4458	0.0425977	0.0361337	0.152563	0.148082
chr2	15523245	15523345	1072781	0	-	0.45	(0.44,0.476]	chr2	114441	115	INTRON	INTRON	NBAS	ENSG00000151779.13	ENST00000281513.10	protein_coding	protein_coding	protein_coding	protein_coding	11	103	2	1.64874	2.23168	2.81462	0.00875406	0.00247064	0.0846118	0.0446195
chr7	27625471	27625571	3510565	0	-	0.34	(0.32,0.35]	chr7	327330	820	INTRON	INTRON	HIBADH	ENSG00000106049.9	ENST00000265395.7:ENST00000428288.2:ENST00000425715.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	43	2	1.95271	2.2316599999999998	2.51061	0.0431213	0.0364463	0.162255	0.138959
chrX	136926676	136926776	7727636	0	+	0.33	(0.32,0.35]	chrX	790772	9	INTRON	INTRON	TM9SF5P	ENSG00000234062.9	ENST00000650669.2:ENST00000687469.1:ENST00000431464.6:ENST00000685550.1:ENST00000685929.1:ENST00000424306.5:ENST00000687978.1:ENST00000688713.1:ENST00000693626.1:ENST00000686432.1:ENST00000693698.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	3	43	2	1.95271	2.2316599999999998	2.51061	0.0431213	0.0364463	0.162255	0.138959
chr14	21267060	21267156	5835145	0	-	0.322917	(0.32,0.35]	chr14	554469	17	INTRON	INTRON	HNRNPC	ENSG00000092199.19	ENST00000336053.10:ENST00000553300.6:ENST00000554969.5:ENST00000556142.5:ENST00000554455.5:ENST00000553753.5:ENST00000555309.5:ENST00000555914.5:ENST00000557442.5:ENST00000556628.5:ENST00000556513.5:ENST00000555883.5:ENST00000557201.5:ENST00000420743.6:ENST00000554539.5:ENST00000554383.5:ENST00000555215.5:ENST00000555137.5:ENST00000554891.5:ENST00000556226.5:ENST00000555176.5:ENST00000553614.5:ENST00000557336.1:ENST00000557768.1:ENST00000557033.1:ENST00000555127.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	15	206	2	2.09449	2.231655	2.36882	0.00154394	8.92003e-4	0.0362716	0.0275429
chr1	149229079	149229179	548182	0	-	0.4	(0.378,0.408]	chr1	64451	276	INTRON	INTRON	ENSG00000215861	ENSG00000215861.7	ENST00000685012.1:ENST00000313342.8:ENST00000663163.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	4	53	2	1.76032	2.23165	2.70298	0.0721577	0.00325723	0.187433	0.0524329
chr21	37421866	37421966	7406777	0	+	0.31	(0.28,0.32]	chr21	754871	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	DYRK1A	ENSG00000157540.22	ENST00000646523.1:ENST00000647425.1:ENST00000647188.2:ENST00000647504.1:ENST00000644942.1:ENST00000338785.8:ENST00000643624.1:ENST00000643551.1:ENST00000426672.6:ENST00000398960.7:ENST00000646548.1:ENST00000645424.1:ENST00000643854.1:ENST00000455097.6:ENST00000642309.1:ENST00000645774.1:ENST00000398956.2	protein_coding	protein_coding	protein_coding	protein_coding	5	77	2	1.68409	2.23163	2.77917	0.0548665	0.00285651	0.165463	0.0494641
chr14	60292580	60292679	5736651	0	+	0.353535	(0.35,0.378]	chr14	544874	2	UTR3	UTR3:EXON_MRNA	PPM1A	ENSG00000100614.18	ENST00000325642.7:ENST00000532036.2:ENST00000395076.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	66	2	2.14264	2.231625	2.32061	0.0274795	0.00545884	0.123904	0.0669938
chr8	47895372	47895471	3945081	0	-	0.434343	(0.408,0.44]	chr8	361823	16	INTRON	INTRON	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7	protein_coding	protein_coding	protein_coding	protein_coding	4	51	2	2.14732	2.231485	2.31565	0.0237354	0.0154718	0.129075	0.100909
chr11	47541028	47541127	4950282	0	-	0.444444	(0.44,0.476]	chr11	464246	164	INTRON	INTRON	CELF1	ENSG00000149187.19	ENST00000310513.10:ENST00000687097.1:ENST00000531165.5:ENST00000530151.5:ENST00000525841.5:ENST00000526419.1	protein_coding	protein_coding	protein_coding	protein_coding	5	60	2	2.22103	2.2314600000000002	2.24189	0.0193405	0.00776319	0.108861	0.0787356
chr17	81564744	81564840	6848854	0	-	0.40625	(0.378,0.408]	chr17	678121	9	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	NPLOC4	ENSG00000182446.14	ENST00000331134.11:ENST00000572760.5:ENST00000572346.5:ENST00000573519.5:ENST00000573876.1:ENST00000571714.5:ENST00000572824.1:ENST00000573212.5:ENST00000576713.6:ENST00000374747.9:ENST00000576940.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	25	285	2	2.04241	2.231455	2.4205	3.90027e-4	2.83304e-4	0.0177751	0.015495
chr5	131782129	131782229	2720596	0	-	0.33	(0.32,0.35]	chr5	255730	371	INTRON	INTRON	FNIP1	ENSG00000217128.13	ENST00000510461.6:ENST00000307954.12:ENST00000307968.11:ENST00000511848.1	protein_coding	protein_coding	protein_coding	protein_coding	11	149	2	2.10207	2.2314499999999997	2.36083	0.0089151	5.29833e-4	0.0799896	0.0207315
chr9	37171525	37171625	4118170	0	+	0.46	(0.44,0.476]	chr9	375384	114	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000322831.6:ENST00000461038.5:ENST00000488607.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	101	2	1.75865	2.23143	2.70421	0.0130473	9.23275e-4	0.093385	0.0278392
chrX	123658352	123658452	7878298	0	-	0.39	(0.378,0.408]	chrX	802527	126	INTRON	INTRON	THOC2	ENSG00000125676.20	ENST00000245838.13:ENST00000355725.8:ENST00000491737.5	protein_coding	protein_coding	protein_coding	protein_coding	5	53	2	1.45712	2.2314	3.00568	0.0597975	0.00811866	0.189982	0.0766625
chr16	50306949	50307049	6349016	0	+	0.6	(0.57,1]	chr16	609475	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	ADCY7	ENSG00000121281.13	ENST00000394697.7:ENST00000673801.1:ENST00000566433.6:ENST00000673973.1:ENST00000537579.5:ENST00000254235.7:ENST00000567277.6:ENST00000570187.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	52	2	1.65222	2.231395	2.81057	0.0093192	0.00169295	0.0817766	0.0381936
chr19	5617966	5618064	7124315	0	-	0.469388	(0.44,0.476]	chr19	717040	11	INTRON	INTRON	SAFB2	ENSG00000130254.12	ENST00000252542.9:ENST00000591120.1:ENST00000590262.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	60	2	2.03266	2.2313099999999997	2.42996	0.0155853	0.0104804	0.109411	0.0855777
chr1	167543000	167543100	576932	0	-	0.47	(0.44,0.476]	chr1	69951	3	INTRON	INTRON	CREG1	ENSG00000143162.9	ENST00000466652.2:ENST00000370509.5	protein_coding	protein_coding	protein_coding	protein_coding	11	126	2	2.15136	2.23129	2.31122	0.0061794	5.48676e-4	0.0677395	0.0213049
chr19	11147045	11147133	7136882	0	-	0.352273	(0.35,0.378]	chr19	719785	8	UTR3	UTR3:EXON_MRNA:INTRON	SPC24	ENSG00000161888.12	ENST00000585567.5:ENST00000592540.6:ENST00000591396.5:ENST00000592967.5:ENST00000423327.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	130	2	2.17486	2.23127	2.28768	0.00289708	0.00240273	0.0494641	0.0440913
chr10	48314754	48314854	4431069	0	+	0.31	(0.28,0.32]	chr10	408563	61	INTRON	INTRON	MAPK8	ENSG00000107643.17	ENST00000395611.7:ENST00000432379.5:ENST00000374189.6:ENST00000429041.6:ENST00000374179.8:ENST00000426557.5:ENST00000476134.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	99	2	2.05785	2.231215	2.40458	0.0141047	0.00560246	0.0959618	0.0678837
chr18	1350021	1350121	6941680	0	-	0.43	(0.408,0.44]	chr18	686582	4	SS3_PROX	SS3_PROX:INTRON	LINC00470	ENSG00000132204.14	ENST00000657423.1:ENST00000657618.1:ENST00000584090.5:ENST00000660947.1:ENST00000669242.1:ENST00000660475.1:ENST00000653775.1:ENST00000661931.1:ENST00000412816.7:ENST00000577867.5:ENST00000584492.5:ENST00000667416.1:ENST00000661852.1:ENST00000657919.1:ENST00000661646.1:ENST00000667776.1:ENST00000654559.1:ENST00000661233.1:ENST00000653213.1:ENST00000659094.1:ENST00000660964.1:ENST00000577403.6:ENST00000660358.1:ENST00000669153.1:ENST00000657121.1:ENST00000655957.1:ENST00000659289.1:ENST00000665133.1:ENST00000671558.1:ENST00000666542.1:ENST00000663512.1:ENST00000582862.6:ENST00000578835.5:ENST00000669312.1:ENST00000581430.5:ENST00000581212.1:ENST00000658090.1:ENST00000667225.1	lncRNA	lncRNA	lncRNA	lncRNA	3	38	2	1.88062	2.231205	2.58179	0.0534548	0.024638	0.162935	0.131869
chr2	222866074	222866173	1021260	0	+	0.333333	(0.32,0.35]	chr2	109244	1	INTRON	INTRON	ACSL3	ENSG00000123983.15	ENST00000392066.7:ENST00000407441.5:ENST00000680251.1:ENST00000679541.1:ENST00000681906.1:ENST00000679545.1:ENST00000679932.1:ENST00000680100.1:ENST00000680475.1:ENST00000680525.1:ENST00000680420.1:ENST00000681326.1:ENST00000681292.1:ENST00000681017.1:ENST00000680382.1:ENST00000535678.2:ENST00000680395.1:ENST00000680736.1:ENST00000679546.1:ENST00000680147.1:ENST00000357430.8:ENST00000681009.1:ENST00000679514.1:ENST00000681697.1:ENST00000680921.1:ENST00000681383.1:ENST00000413316.1:ENST00000679558.1:ENST00000680684.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	71	2	1.96288	2.2310849999999998	2.49929	0.0239991	0.00776612	0.119664	0.0787356
chr10	102111636	102111736	4681253	0	-	0.54	(0.515,0.57]	chr10	432129	1	SS3_PROX	SS3_PROX:INTRON	LDB1	ENSG00000198728.11	ENST00000673968.1:ENST00000425280.2:ENST00000361198.9	protein_coding	protein_coding	protein_coding	protein_coding	6	59	2	2.07721	2.230985	2.38476	0.0110593	0.0067022	0.0873897	0.0738715
chr1	160030956	160031054	571017	0	-	0.418367	(0.408,0.44]	chr1	69055	5	CDS	CDS:EXON_MRNA	PIGM	ENSG00000143315.8	ENST00000368090.5	protein_coding	protein_coding	protein_coding	protein_coding	6	69	2	1.96973	2.230955	2.49218	0.0108773	0.00855168	0.0923273	0.0780217
chr20	35714889	35714985	7336270	0	-	0.3125	(0.28,0.32]	chr20	747440	1	INTRON	INTRON	RBM39	ENSG00000131051.24	ENST00000253363.11:ENST00000639702.1:ENST00000656873.1:ENST00000463004.5:ENST00000361162.10:ENST00000461283.5:ENST00000403542.6:ENST00000338163.10:ENST00000528062.7:ENST00000429968.5:ENST00000444878.5:ENST00000665058.1:ENST00000492779.5:ENST00000448303.5:ENST00000615771.5:ENST00000475651.5:ENST00000490484.7:ENST00000494274.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	64	2	1.86684	2.23094	2.59504	0.0605813	0.00582473	0.171122	0.0687439
chr22	47709132	47709229	7540138	0	+	0.28866000000000003	(0.28,0.32]	chr22	770713	17	INTRON	INTRON	ENSG00000224271	ENSG00000224271.7	ENST00000664761.1:ENST00000651071.1:ENST00000650683.1:ENST00000651536.1:ENST00000652499.1:ENST00000652656.1:ENST00000652072.1:ENST00000651445.1:ENST00000423737.5:ENST00000650660.1:ENST00000651056.1:ENST00000652611.1:ENST00000652399.1:ENST00000652123.1:ENST00000651311.1:ENST00000651458.1:ENST00000652505.1:ENST00000652702.2:ENST00000652334.1:ENST00000652030.2:ENST00000651403.1:ENST00000652228.1:ENST00000651124.1:ENST00000650972.1:ENST00000651985.1:ENST00000651637.1:ENST00000650924.1:ENST00000651003.1:ENST00000652168.1:ENST00000651948.2:ENST00000651293.1:ENST00000651939.1:ENST00000650787.1:ENST00000651517.1:ENST00000651662.1:ENST00000652690.1:ENST00000651638.1:ENST00000670853.1:ENST00000652750.1:ENST00000652080.1:ENST00000651294.1:ENST00000652164.1:ENST00000651538.1:ENST00000650775.1:ENST00000651983.1:ENST00000651033.1:ENST00000651584.1:ENST00000650884.1:ENST00000651270.1	lncRNA	lncRNA	lncRNA	lncRNA	4	64	2	1.86684	2.23094	2.59504	0.0605813	0.00582473	0.171122	0.0687439
chr3	5147946	5148046	1353832	0	+	0.43	(0.408,0.44]	chr3	142361	190	INTRON	INTRON	ARL8B	ENSG00000134108.14	ENST00000429403.5:ENST00000256496.8:ENST00000455168.5:ENST00000444332.1:ENST00000419534.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	71	2	2.16746	2.23086	2.29426	0.024436	0.00277178	0.12011	0.04874
chr4	55403135	55403235	1960661	0	+	0.33	(0.32,0.35]	chr4	196548	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	TMEM165	ENSG00000134851.13	ENST00000381334.10:ENST00000506198.5:ENST00000508404.5:ENST00000511710.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	12	157	2	2.17537	2.23079	2.28621	0.0044232	0.00101974	0.0588897	0.0294041
chr7	152328105	152328205	3680210	0	-	0.33	(0.32,0.35]	chr7	341641	124	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000684262.1:ENST00000682301.1:ENST00000452749.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	157	2	2.17537	2.23079	2.28621	0.0044232	0.00101974	0.0588897	0.0294041
chr8	129472360	129472460	4059998	0	-	0.23	[0,0.28]	chr8	369602	151	INTRON	INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1:ENST00000676273.1:ENST00000667643.1:ENST00000668791.1:ENST00000663716.1:ENST00000663572.1:ENST00000676148.1:ENST00000667962.1:ENST00000674877.1:ENST00000675316.1:ENST00000674656.1:ENST00000446592.7:ENST00000667341.1:ENST00000675186.1:ENST00000652971.1:ENST00000661447.1:ENST00000674863.1:ENST00000675498.1:ENST00000675527.1:ENST00000676108.1:ENST00000657647.1:ENST00000675589.1:ENST00000675913.1:ENST00000675109.1:ENST00000671632.1:ENST00000671311.1:ENST00000676099.1:ENST00000660652.1:ENST00000675522.1:ENST00000675183.1:ENST00000658861.1:ENST00000663991.1:ENST00000675044.1:ENST00000675435.1:ENST00000674639.1:ENST00000676069.1:ENST00000675532.1:ENST00000674762.1:ENST00000523151.6:ENST00000675948.1:ENST00000665364.1:ENST00000657251.1:ENST00000675166.1:ENST00000674883.1:ENST00000675867.1:ENST00000674580.1:ENST00000675393.1:ENST00000520048.1:ENST00000674906.1:ENST00000676030.1:ENST00000670588.1:ENST00000675072.1:ENST00000664936.1:ENST00000652914.1:ENST00000657069.1	lncRNA	lncRNA	lncRNA	lncRNA	6	109	2	2.13061	2.23079	2.33097	0.0158969	0.0106411	0.109464	0.0861859
chr10	21989517	21989617	4578541	0	-	0.52	(0.515,0.57]	chr10	421947	600	INTRON	INTRON	DNAJC1	ENSG00000136770.11	ENST00000376980.8:ENST00000476103.3:ENST00000447548.5:ENST00000376946.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	43	2	1.9459	2.2307550000000003	2.51561	0.0429089	0.00635044	0.148082	0.0723103
chr16	70272667	70272764	6510322	0	-	0.484536	(0.476,0.515]	chr16	630585	3	INTRON	INTRON	AARS1	ENSG00000090861.17	ENST00000674963.1:ENST00000675643.1:ENST00000675917.1:ENST00000674691.1:ENST00000261772.13:ENST00000675569.1:ENST00000676209.1:ENST00000676211.1:ENST00000676040.1:ENST00000675953.1:ENST00000675691.1:ENST00000676004.1:ENST00000675270.1:ENST00000675403.1:ENST00000676212.1:ENST00000675045.1:ENST00000675035.1:ENST00000676168.1:ENST00000674652.1:ENST00000675133.1:ENST00000675120.1:ENST00000674811.1:ENST00000674512.1:ENST00000675853.1:ENST00000565361.3:ENST00000676247.1:ENST00000674848.1:ENST00000674962.1:ENST00000675371.1:ENST00000675986.1:ENST00000674768.1:ENST00000675297.1:ENST00000675751.1:ENST00000564359.6:ENST00000675338.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	119	2	2.11276	2.230715	2.34867	0.00539703	0.00116438	0.0644048	0.0314528
chr7	141746924	141747023	3440188	0	+	0.242424	[0,0.28]	chr7	320695	5	INTRON	INTRON	SSBP1	ENSG00000106028.11	ENST00000612337.4:ENST00000265304.11:ENST00000498107.5:ENST00000469123.5:ENST00000467681.5:ENST00000465582.5:ENST00000465167.1:ENST00000484178.5:ENST00000481508.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	112	2	1.86436	2.23071	2.59706	0.0134322	0.00894925	0.101281	0.0799922
chr10	69169131	69169221	4445007	0	+	0.433333	(0.408,0.44]	chr10	410060	1	INTRON	INTRON	VPS26A	ENSG00000122958.15	ENST00000373382.5:ENST00000395098.5:ENST00000263559.11:ENST00000490696.5:ENST00000489794.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	45	2	1.8749	2.23057	2.58624	0.0273686	0.0264246	0.133676	0.123904
chrX	71410741	71410841	7678691	0	+	0.47	(0.44,0.476]	chrX	786269	22	INTRON	INTRON	TAF1	ENSG00000147133.17	ENST00000683202.1:ENST00000373790.9:ENST00000423759.6:ENST00000683782.1:ENST00000683668.1:ENST00000276072.9:ENST00000463163.5:ENST00000373775.8:ENST00000485087.6:ENST00000437147.8:ENST00000683358.1:ENST00000682124.1:ENST00000461764.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	18	195	2	1.54519	2.23057	2.91595	0.0109647	2.22868e-5	0.0873803	0.00368183
chr7	127663948	127664048	3402509	0	+	0.37	(0.35,0.378]	chr7	318063	111	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000463020.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	11	140	2	1.9786300000000001	2.230565	2.4825	0.00609631	6.3584e-4	0.0676501	0.0228285
chr1	228089537	228089632	330838	0	+	0.368421	(0.35,0.378]	chr1	38115	9	INTRON	INTRON	ARF1	ENSG00000143761.16	ENST00000540651.5:ENST00000272102.10:ENST00000470670.5:ENST00000478424.5:ENST00000470558.5:ENST00000473949.5:ENST00000477451.5:ENST00000478336.5:ENST00000541182.1:ENST00000469235.5:ENST00000473546.1:ENST00000482962.5:ENST00000497165.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	106	2	1.59904	2.2305450000000002	2.86205	0.0285976	7.01936e-4	0.139244	0.024224
chr12	57395248	57395348	5338900	0	-	0.53	(0.515,0.57]	chr12	510711	1	SS5_PROX	SS5_PROX:INTRON	R3HDM2	ENSG00000179912.21	ENST00000402412.6:ENST00000347140.7:ENST00000634871.1:ENST00000448732.1	protein_coding	protein_coding	protein_coding	protein_coding	5	52	2	2.06758	2.2305450000000002	2.39351	0.0140038	0.0100431	0.0959618	0.0881096
chr2	144514550	144514650	1241757	0	-	0.41	(0.408,0.44]	chr2	131754	2	INTRON	INTRON	ZEB2	ENSG00000169554.23	ENST00000636471.1:ENST00000627532.3:ENST00000638128.1:ENST00000637304.1:ENST00000419938.5:ENST00000409487.7:ENST00000636732.2:ENST00000636026.2:ENST00000675069.1:ENST00000689298.1:ENST00000539609.7:ENST00000558170.6:ENST00000303660.8:ENST00000427902.5:ENST00000637267.2:ENST00000392861.6:ENST00000431672.4:ENST00000409211.5:ENST00000465308.5:ENST00000434448.5:ENST00000472146.5:ENST00000461784.3:ENST00000476394.5:ENST00000637591.2:ENST00000479735.1:ENST00000453352.5:ENST00000435831.5:ENST00000444559.5:ENST00000630572.2:ENST00000484313.3:ENST00000629955.1:ENST00000465070.5:ENST00000636445.1:ENST00000629520.2:ENST00000470879.5:ENST00000462355.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	14	148	2	1.69996	2.2304649999999997	2.76097	0.00578004	3.95495e-4	0.0684334	0.0185763
chr8	102351085	102351185	4012135	0	-	0.37	(0.35,0.378]	chr8	367218	36	INTRON	INTRON	UBR5	ENSG00000104517.13	ENST00000520539.6:ENST00000220959.8:ENST00000521922.5	protein_coding	protein_coding	protein_coding	protein_coding	11	136	2	2.18208	2.23043	2.27878	0.0041508	0.00122332	0.0568675	0.0324786
chr1	95238336	95238430	167787	0	+	0.287234	(0.28,0.32]	chr1	18161	5	INTRON	INTRON	TLCD4-RWDD3:RWDD3	ENSG00000271092.5:ENSG00000122481.17	ENST00000604534.5:ENST00000604203.1:ENST00000370202.5:ENST00000263893.10:ENST00000492639.5:ENST00000495272.5:ENST00000497058.5:ENST00000473397.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	57	2	1.94591	2.2303949999999997	2.51488	0.0380957	0.0228482	0.141678	0.125519
chr5	43550784	43550883	2615399	0	-	0.30303	(0.28,0.32]	chr5	248701	25	INTRON	INTRON	PAIP1	ENSG00000172239.14	ENST00000306846.8:ENST00000436644.6:ENST00000338972.8:ENST00000514514.5:ENST00000504639.5:ENST00000511321.5:ENST00000508537.1:ENST00000504075.1:ENST00000515338.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	57	2	1.94591	2.2303949999999997	2.51488	0.0380957	0.0228482	0.141678	0.125519
chr7	107608664	107608764	3379197	0	+	0.3	(0.28,0.32]	chr7	316475	53	INTRON	INTRON	DUS4L-BCAP29:BCAP29	ENSG00000288558.2:ENSG00000075790.12	ENST00000673689.1:ENST00000673720.1:ENST00000673780.1:ENST00000673709.1:ENST00000673970.1:ENST00000674049.1:ENST00000673992.1:ENST00000673665.1:ENST00000674062.1:ENST00000673784.1:ENST00000673757.1:ENST00000005259.9:ENST00000465919.5:ENST00000494086.5:ENST00000482371.5:ENST00000445771.6:ENST00000442065.5:ENST00000457837.5:ENST00000379117.6:ENST00000379119.6:ENST00000491150.5:ENST00000436699.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	57	2	1.94591	2.2303949999999997	2.51488	0.0380957	0.0228482	0.141678	0.125519
chr8	108248314	108248413	4023274	0	-	0.484848	(0.476,0.515]	chr8	367690	50	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	EIF3E	ENSG00000104408.11	ENST00000678042.1:ENST00000678773.1:ENST00000677409.1:ENST00000676892.1:ENST00000523674.2:ENST00000677674.1:ENST00000220849.10:ENST00000678937.1:ENST00000677084.1:ENST00000676706.1:ENST00000518100.6:ENST00000677040.1:ENST00000676698.1:ENST00000522352.6:ENST00000521297.2:ENST00000519030.6:ENST00000519627.2:ENST00000518345.2:ENST00000522445.6:ENST00000678334.1:ENST00000678023.1:ENST00000678797.1:ENST00000677614.1:ENST00000676642.1:ENST00000677965.1:ENST00000678901.1:ENST00000678243.1:ENST00000676663.1:ENST00000679198.1:ENST00000678004.1:ENST00000678881.1:ENST00000677590.1:ENST00000677272.1:ENST00000677746.1:ENST00000677447.1:ENST00000676548.1:ENST00000676487.1:ENST00000521440.6:ENST00000518442.5:ENST00000522887.1:ENST00000518634.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	76	2	1.65426	2.230385	2.80651	0.0231344	0.00250121	0.126939	0.0446195
chr9	130877126	130877225	4215501	0	+	0.424242	(0.408,0.44]	chr9	386466	17	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000318560.6	protein_coding	protein_coding	protein_coding	protein_coding	6	57	2	1.35436	2.230385	3.10641	0.0603719	0.00555646	0.19151	0.0648867
chr3	9389420	9389519	1611639	0	-	0.383838	(0.378,0.408]	chr3	166260	21	EXON_LNCRNA	EXON_LNCRNA:INTRON	THUMPD3-AS1	ENSG00000206573.10	ENST00000468186.5:ENST00000661342.1:ENST00000519043.5:ENST00000657509.1:ENST00000685076.1:ENST00000687342.1:ENST00000685952.1:ENST00000521609.5:ENST00000520629.5:ENST00000523354.1:ENST00000654392.1:ENST00000665171.1:ENST00000668063.1:ENST00000522525.6:ENST00000664441.2:ENST00000469846.3:ENST00000481221.7:ENST00000661714.1:ENST00000665983.1:ENST00000660363.1:ENST00000667458.1:ENST00000520447.1:ENST00000524210.2:ENST00000664273.1:ENST00000521267.5:ENST00000467069.6:ENST00000520396.1	lncRNA	lncRNA	lncRNA	lncRNA	7	86	2	2.15574	2.230365	2.30499	0.00683258	0.00519611	0.0713163	0.0654762
chr16	85557462	85557562	6415406	0	+	0.5	(0.476,0.515]	chr16	615470	7	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	13	153	2	2.14785	2.230335	2.31282	0.00197135	7.70967e-4	0.0411469	0.0255385
chr17	46180626	46180726	6784747	0	-	0.46	(0.44,0.476]	chr17	669245	80	INTRON	INTRON	KANSL1	ENSG00000120071.15	ENST00000574590.6:ENST00000572904.6:ENST00000432791.7:ENST00000575318.6:ENST00000638275.1:ENST00000262419.10:ENST00000648792.1:ENST00000639150.1:ENST00000571698.2:ENST00000639375.1:ENST00000638269.1:ENST00000639356.1:ENST00000574655.6:ENST00000639099.1:ENST00000638902.1:ENST00000576739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	11	115	2	1.78888	2.230285	2.67169	0.00575567	0.00140924	0.068224	0.0340865
chr7	111225606	111225706	3620738	0	-	0.29	(0.28,0.32]	chr7	337093	2617	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	118	2	1.9822	2.230235	2.47827	0.00761984	0.00455673	0.0776647	0.0595107
chr9	131141401	131141499	4215786	0	+	0.22449	[0,0.28]	chr9	386554	8	EXON_MRNA	EXON_MRNA:INTRON	NUP214	ENSG00000126883.19	ENST00000695497.1:ENST00000695498.1:ENST00000695496.1:ENST00000695495.1:ENST00000695494.1:ENST00000695493.1:ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000525561.2:ENST00000651022.1:ENST00000695499.1:ENST00000530863.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	93	1541	2	2.15988	2.230225	2.30057	2.73455e-4	1.2898e-4	0.0151711	0.00979119
chr12	122089763	122089863	5239972	0	+	0.37	(0.35,0.378]	chr12	497496	101	INTRON	INTRON	MLXIP	ENSG00000175727.14	ENST00000319080.12	protein_coding	protein_coding	protein_coding	protein_coding	6	76	2	1.78162	2.23018	2.67874	0.0251606	0.00373022	0.12011	0.0561984
chr21	37414205	37414303	7406698	0	+	0.377551	(0.35,0.378]	chr21	754856	32	INTRON	INTRON	DYRK1A	ENSG00000157540.22	ENST00000646523.1:ENST00000647425.1:ENST00000647188.2:ENST00000647504.1:ENST00000644942.1:ENST00000338785.8:ENST00000643624.1:ENST00000643551.1:ENST00000426672.6:ENST00000398960.7	protein_coding	protein_coding	protein_coding	protein_coding	7	85	2	2.09348	2.230125	2.36677	0.0139343	0.00418185	0.0957526	0.0591344
chr17	82628553	82628648	6853491	0	-	0.4	(0.378,0.408]	chr17	679367	9	INTRON	INTRON	WDR45B	ENSG00000141580.16	ENST00000392325.9:ENST00000572583.5:ENST00000571835.5:ENST00000573616.5:ENST00000571817.5:ENST00000574828.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	60	2	1.67073	2.230095	2.78946	0.0219426	0.0158859	0.123836	0.101453
chr7	152421234	152421334	3681146	0	-	0.39	(0.378,0.408]	chr7	341660	622	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000682301.1:ENST00000452749.2:ENST00000680867.1:ENST00000683800.1:ENST00000684278.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	147	2	2.0852	2.230095	2.37499	0.00259953	0.00104543	0.0454353	0.0297518
chr6	37823914	37824014	2857074	0	+	0.49	(0.476,0.515]	chr6	270225	35	INTRON	INTRON	ZFAND3	ENSG00000156639.12	ENST00000287218.9:ENST00000373391.6:ENST00000474522.5	protein_coding	protein_coding	protein_coding	protein_coding	5	60	2	1.69138	2.229965	2.76855	0.0481165	0.00244302	0.153019	0.0456956
chr7	135406417	135406517	3647916	0	-	0.49	(0.476,0.515]	chr7	339149	78	INTRON	INTRON	CNOT4	ENSG00000080802.20	ENST00000541284.6:ENST00000451834.5:ENST00000423368.6:ENST00000361528.8:ENST00000414802.5:ENST00000428680.6:ENST00000315544.6	protein_coding	protein_coding	protein_coding	protein_coding	6	69	2	1.82595	2.229955	2.63396	0.0202339	0.00426634	0.109955	0.0596808
chr1	12024990	12025089	26880	0	+	0.282828	(0.28,0.32]	chr1	3206	17	INTRON	INTRON	MIIP	ENSG00000116691.11	ENST00000478749.5:ENST00000235332.6:ENST00000466860.5:ENST00000498685.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	116	2	1.45587	2.2299100000000003	3.00395	0.0175927	0.0101329	0.11319	0.0850389
chr12	111569478	111569577	5412934	0	-	0.474747	(0.44,0.476]	chr12	516941	47	INTRON	INTRON	ATXN2	ENSG00000204842.18	ENST00000642389.2:ENST00000608853.5:ENST00000672613.1:ENST00000673436.1:ENST00000643669.2:ENST00000616825.4:ENST00000389153.10:ENST00000550104.5:ENST00000483311.6:ENST00000672335.1:ENST00000673557.1:ENST00000673283.1:ENST00000673449.1:ENST00000535949.5:ENST00000542287.6:ENST00000644883.1:ENST00000647305.1:ENST00000671792.1:ENST00000392645.6:ENST00000672105.1:ENST00000549455.1:ENST00000548492.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	37	2	2.0776	2.229895	2.38219	0.045456	0.0292951	0.149888	0.141862
chr2	61457271	61457370	1130419	0	-	0.444444	(0.44,0.476]	chr2	121499	361	INTRON	INTRON	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000453133.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	37	2	2.0776	2.229895	2.38219	0.045456	0.0292951	0.149888	0.141862
chr7	101833767	101833867	3366526	0	+	0.43	(0.408,0.44]	chr7	315215	144	INTRON	INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000497815.5:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000607092.1:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000558469.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	69	2	2.00961	2.22982	2.45003	0.00990006	0.00931007	0.0855292	0.0838372
chr16	89479750	89479850	6543494	0	-	0.56	(0.515,0.57]	chr16	634281	481	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	71	2	1.73313	2.229775	2.72642	0.0258496	7.31116e-4	0.121322	0.0246497
chr10	50414366	50414466	4618589	0	-	0.37	(0.35,0.378]	chr10	425422	697	INTRON	INTRON	SGMS1	ENSG00000198964.14	ENST00000429490.5:ENST00000361781.7:ENST00000619438.4:ENST00000492601.2:ENST00000609445.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	101	2	1.91549	2.229715	2.54394	0.00887698	0.0028214	0.0849778	0.0472361
chr6	37838906	37839006	2857224	0	+	0.37	(0.35,0.378]	chr6	270225	185	INTRON	INTRON	ZFAND3	ENSG00000156639.12	ENST00000287218.9:ENST00000373391.6:ENST00000474522.5	protein_coding	protein_coding	protein_coding	protein_coding	6	62	2	1.51819	2.22965	2.94111	0.0372715	0.0104563	0.155878	0.0855102
chr1	8797378	8797478	373582	0	-	0.31	(0.28,0.32]	chr1	43555	44	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000656437.1:ENST00000659924.1	protein_coding	protein_coding	protein_coding	protein_coding	12	182	2	2.17405	2.229635	2.28522	0.00226132	0.00219334	0.0437013	0.0417893
chr10	49849819	49849919	4615268	0	-	0.46	(0.44,0.476]	chr10	425142	58	INTRON	INTRON	PARG	ENSG00000227345.9	ENST00000402038.7:ENST00000616448.2:ENST00000614063.4:ENST00000610922.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	37	2	1.85146	2.2296	2.60774	0.0545846	0.0255874	0.182529	0.120269
chr22	50444996	50445090	7545235	0	+	0.446809	(0.44,0.476]	chr22	771145	9	UTR3	UTR3:EXON_MRNA	PPP6R2	ENSG00000100239.16	ENST00000359139.7:ENST00000612753.5	protein_coding	protein_coding	protein_coding	protein_coding	3	37	2	1.85146	2.2296	2.60774	0.0545846	0.0255874	0.182529	0.120269
chr9	120418110	120418208	4332230	0	-	0.469388	(0.44,0.476]	chr9	397980	26	INTRON	INTRON	CDK5RAP2	ENSG00000136861.19	ENST00000349780.9:ENST00000360190.8:ENST00000687279.1:ENST00000687633.1:ENST00000684780.1:ENST00000687311.1:ENST00000479584.2:ENST00000690814.1:ENST00000686842.1:ENST00000691551.1:ENST00000693714.1:ENST00000693386.1:ENST00000692746.1:ENST00000686376.1:ENST00000692155.1:ENST00000690646.1:ENST00000693433.1:ENST00000688923.1:ENST00000473282.6:ENST00000480112.5:ENST00000685866.1:ENST00000689688.1:ENST00000416449.6:ENST00000691504.1:ENST00000425647.1:ENST00000360822.8:ENST00000693728.1:ENST00000483412.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	37	2	1.85146	2.2296	2.60774	0.0545846	0.0255874	0.182529	0.120269
chrX	68535886	68535986	7674147	0	+	0.45	(0.44,0.476]	chrX	785442	40	UTR3	UTR3:EXON_MRNA	YIPF6	ENSG00000181704.12	ENST00000374622.3:ENST00000462683.6	protein_coding	protein_coding	protein_coding	protein_coding	3	37	2	1.85146	2.2296	2.60774	0.0545846	0.0255874	0.182529	0.120269
chr9	34199062	34199162	4111470	0	+	0.47	(0.44,0.476]	chr9	374720	73	INTRON	INTRON	UBAP1	ENSG00000165006.14	ENST00000625521.2:ENST00000379186.8:ENST00000297661.9:ENST00000626262.2	protein_coding	protein_coding	protein_coding	protein_coding	8	92	2	1.63371	2.22951	2.82531	0.0271664	5.00634e-4	0.123904	0.020217099999999998
chr1	65285590	65285690	135849	0	+	0.33	(0.32,0.35]	chr1	15346	203	INTRON	INTRON	DNAJC6	ENSG00000116675.16	ENST00000463018.5:ENST00000494710.6:ENST00000263441.11:ENST00000395325.7:ENST00000483402.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	135	2	1.74978	2.2295	2.70922	0.0157772	4.28954e-4	0.101453	0.0185474
chr4	55409219	55409319	1960723	0	+	0.29	(0.28,0.32]	chr4	196553	55	INTRON	INTRON	TMEM165	ENSG00000134851.13	ENST00000381334.10:ENST00000506198.5:ENST00000508404.5:ENST00000511710.1:ENST00000502797.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	74	2	1.72809	2.22943	2.73077	0.0220748	0.0197186	0.120131	0.115395
chr8	28890751	28890840	3724856	0	+	0.606742	(0.57,1]	chr8	346240	5	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	HMBOX1	ENSG00000147421.18	ENST00000287701.15:ENST00000558662.5:ENST00000519662.5:ENST00000397358.7:ENST00000560599.5:ENST00000523613.5:ENST00000560357.5:ENST00000521516.5:ENST00000519047.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	36	2	1.72406	2.2294	2.73474	0.0261443	0.00241874	0.122221	0.0454275
chr4	110195448	110195547	2227703	0	-	0.40404	(0.378,0.408]	chr4	218024	895	INTRON	INTRON	ELOVL6	ENSG00000170522.10	ENST00000394607.7:ENST00000302274.8:ENST00000514184.5:ENST00000506625.5:ENST00000506461.1:ENST00000503885.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	13	153	2	1.63315	2.22939	2.82563	0.0141534	8.32217e-5	0.0959618	0.00767886
chr12	110293515	110293614	5226222	0	+	0.494949	(0.476,0.515]	chr12	495240	10	INTRON	INTRON	ATP2A2	ENSG00000174437.18	ENST00000552636.2:ENST00000308664.10:ENST00000539276.7:ENST00000377685.9:ENST00000548169.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	116	2	1.9538	2.22934	2.50488	0.00285353	0.00264114	0.0474836	0.0473326
chr12	53033305	53033405	5141698	0	+	0.43	(0.408,0.44]	chr12	485030	1	SS3_PROX	SS3_PROX:INTRON	EIF4B	ENSG00000063046.18	ENST00000262056.14:ENST00000420463.7:ENST00000416762.7:ENST00000550704.5:ENST00000549481.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	70	2	1.81017	2.22923	2.64829	0.0217525	0.00400062	0.11491	0.057767
chr7	121177133	121177233	3395540	0	+	0.44	(0.408,0.44]	chr7	317781	271	INTRON	INTRON	CPED1	ENSG00000106034.18	ENST00000310396.10:ENST00000450913.6:ENST00000423795.5:ENST00000466055.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	84	2	1.80873	2.229085	2.64944	0.00917795	0.00481947	0.0855292	0.060277
chr16	16601780	16601880	6311880	0	+	0.33	(0.32,0.35]	chr16	604098	1018	INTRON	INTRON	ENSG00000260126	ENSG00000260126.2	ENST00000567465.2	lncRNA	lncRNA	lncRNA	lncRNA	13	177	2	2.19426	2.228995	2.26373	0.00201979	0.00126656	0.04086	0.0330145
chr6	36595620	36595711	2854424	0	+	0.32967	(0.32,0.35]	chr6	269770	5	INTRON	INTRON	SRSF3	ENSG00000112081.17	ENST00000613941.4:ENST00000373715.11:ENST00000620242.1:ENST00000339436.11:ENST00000477442.6:ENST00000620941.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	96	2	1.9587	2.228995	2.49929	0.00997254	0.00776612	0.0842795	0.0787356
chr1	58670405	58670501	467526	0	-	0.333333	(0.32,0.35]	chr1	56435	10	INTRON	INTRON	MYSM1	ENSG00000162601.11	ENST00000655340.1:ENST00000493821.6:ENST00000472487.6:ENST00000665648.1:ENST00000659812.1:ENST00000659108.1:ENST00000401044.7:ENST00000660611.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	43	2	2.07985	2.228895	2.37794	0.0498601	0.0303092	0.156383	0.143025
chr2	171140252	171140352	1263893	0	-	0.35	(0.32,0.35]	chr2	133921	220	INTRON	INTRON	TLK1	ENSG00000198586.14	ENST00000431350.7:ENST00000360843.7:ENST00000359766.7:ENST00000521943.5:ENST00000409443.6:ENST00000413010.5:ENST00000470340.1:ENST00000466220.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	43	2	2.07985	2.228895	2.37794	0.0498601	0.0303092	0.156383	0.143025
chr6	53088997	53089097	2877794	0	+	0.47	(0.44,0.476]	chr6	273154	60	INTRON	INTRON	FBXO9	ENSG00000112146.17	ENST00000370939.7:ENST00000323557.12:ENST00000244426.10:ENST00000480463.6:ENST00000484812.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	72	2	2.07016	2.228895	2.38763	0.0151815	0.00394089	0.0994339	0.0573041
chr5	36878470	36878569	2338446	0	+	0.383838	(0.378,0.408]	chr5	225947	9	INTRON	INTRON	NIPBL	ENSG00000164190.19	ENST00000282516.13:ENST00000448238.2:ENST00000652901.1	protein_coding	protein_coding	protein_coding	protein_coding	3	39	2	1.8252	2.228835	2.63247	0.0619563	0.0215745	0.174514	0.123836
chrX	154017736	154017820	7912291	0	-	0.404762	(0.378,0.408]	chrX	805561	3	SS5_PROX	SS5_PROX:INTRON	IRAK1	ENSG00000184216.14	ENST00000369974.6:ENST00000369980.8:ENST00000444230.5:ENST00000477274.1:ENST00000369973.7:ENST00000393687.6:ENST00000429936.6:ENST00000443220.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	39	2	1.8252	2.228835	2.63247	0.0619563	0.0215745	0.174514	0.123836
chr1	46357313	46357413	96845	0	+	0.48	(0.476,0.515]	chr1	13015	39	INTRON	INTRON	NSUN4	ENSG00000117481.11	ENST00000307089.7:ENST00000486270.5:ENST00000474844.6:ENST00000537428.2:ENST00000498008.5:ENST00000495427.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	37	2	1.72558	2.228815	2.73205	0.0767648	0.0159328	0.196164	0.109464
chr1	67239381	67239480	141110	0	+	0.50505	(0.476,0.515]	chr1	15783	22	INTRON	INTRON	IL23R	ENSG00000162594.16	ENST00000637002.1:ENST00000347310.10:ENST00000425614.3:ENST00000473881.2:ENST00000395227.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	37	2	1.72558	2.228815	2.73205	0.0767648	0.0159328	0.196164	0.109464
chr1	246468450	246468550	680334	0	-	0.48	(0.476,0.515]	chr1	79777	512	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000490107.6:ENST00000462422.5:ENST00000403792.7:ENST00000470863.1:ENST00000455277.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	37	2	1.72558	2.228815	2.73205	0.0767648	0.0159328	0.196164	0.109464
chr2	15550097	15550196	1073052	0	-	0.434343	(0.408,0.44]	chr2	114459	104	INTRON	INTRON	NBAS	ENSG00000151779.13	ENST00000281513.10	protein_coding	protein_coding	protein_coding	protein_coding	6	57	2	1.45162	2.228785	3.00595	0.0451203	0.00781452	0.163518	0.0759016
chr6	35365430	35365530	2852207	0	+	0.39	(0.378,0.408]	chr6	269491	179	INTRON	INTRON	PPARD	ENSG00000112033.14	ENST00000418635.6:ENST00000448077.6:ENST00000360694.8:ENST00000311565.4:ENST00000337400.6	protein_coding	protein_coding	protein_coding	protein_coding	13	156	2	2.11033	2.228725	2.34712	0.00326474	4.66491e-4	0.0508595	0.0195691
chr2	32004887	32004987	1091060	0	-	0.43	(0.408,0.44]	chr2	116913	417	INTRON	INTRON	MEMO1:DPY30	ENSG00000162959.14:ENSG00000162961.14	ENST00000295065.9:ENST00000446765.5:ENST00000404530.6:ENST00000490459.5:ENST00000426310.6:ENST00000413686.1:ENST00000407893.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	126	2	1.89841	2.228715	2.55902	0.00574909	7.64731e-4	0.0658933	0.0254338
chr1	185306023	185306119	603593	0	-	0.322917	(0.32,0.35]	chr1	71892	5	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	IVNS1ABP	ENSG00000116679.16	ENST00000367498.8:ENST00000480769.5:ENST00000459929.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	11	150	2	1.92969	2.2287	2.52771	0.00809414	5.57285e-4	0.0766625	0.021494
chr16	81477082	81477182	6405320	0	+	0.4	(0.378,0.408]	chr16	615026	312	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8	protein_coding	protein_coding	protein_coding	protein_coding	5	64	2	2.10212	2.228695	2.35527	0.0141232	0.0121511	0.0963966	0.0959618
chr20	62284364	62284461	7298666	0	+	0.484536	(0.476,0.515]	chr20	742469	3	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	OSBPL2	ENSG00000130703.17	ENST00000439951.6:ENST00000644535.1:ENST00000358053.3:ENST00000313733.9:ENST00000645520.1:ENST00000642932.1:ENST00000642516.1:ENST00000643174.1:ENST00000644775.1:ENST00000645442.1:ENST00000646968.1:ENST00000646834.1:ENST00000643412.1:ENST00000645426.1:ENST00000644702.1:ENST00000643981.1:ENST00000642714.1:ENST00000621075.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	60	2	2.16377	2.2286799999999998	2.29359	0.0243026	0.00584957	0.12011	0.0689807
chr15	44546789	44546889	6015483	0	+	0.35	(0.32,0.35]	chr15	573008	90	INTRON	INTRON	EIF3J	ENSG00000104131.13	ENST00000424492.7:ENST00000261868.10:ENST00000535391.5	protein_coding	protein_coding	protein_coding	protein_coding	3	43	2	1.88468	2.228655	2.57263	0.0515071	0.0312297	0.176696	0.13151
chr2	131111443	131111542	864457	0	+	0.323232	(0.32,0.35]	chr2	97119	30	INTRON	INTRON	PLEKHB2	ENSG00000115762.17	ENST00000403716.5:ENST00000439822.6:ENST00000409158.5:ENST00000234115.10:ENST00000628582.2:ENST00000482225.1:ENST00000693505.1:ENST00000438882.6:ENST00000404460.5:ENST00000409612.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	43	2	1.88468	2.228655	2.57263	0.0515071	0.0312297	0.176696	0.13151
chr4	70829883	70829979	2155721	0	-	0.291667	(0.28,0.32]	chr4	212381	15	INTRON	INTRON	GRSF1	ENSG00000132463.15	ENST00000254799.11:ENST00000505068.5:ENST00000499044.6:ENST00000502323.5:ENST00000514161.5:ENST00000506453.1:ENST00000508091.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	77	2	1.9021	2.228655	2.55521	0.0304779	0.0067419	0.130699	0.0739405
chr16	85592626	85592726	6415758	0	+	0.51	(0.476,0.515]	chr16	615470	359	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	8	93	2	1.73294	2.2285749999999998	2.72421	0.0174121	0.00107964	0.112632	0.0302522
chr1	32664333	32664432	65963	0	+	0.464646	(0.44,0.476]	chr1	8429	16	INTRON	INTRON	RBBP4	ENSG00000162521.19	ENST00000414241.7:ENST00000527118.5:ENST00000373493.10:ENST00000401893.7:ENST00000524393.5:ENST00000492348.6:ENST00000526193.5:ENST00000373485.5:ENST00000477563.6:ENST00000458695.6:ENST00000445722.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	38	2	1.96602	2.22857	2.49112	0.0426807	0.0315968	0.148082	0.144381
chr21	28961933	28962033	7436374	0	-	0.49	(0.476,0.515]	chr21	758378	4	SS3_PROX	SS3_PROX:INTRON	LTN1	ENSG00000198862.14	ENST00000614971.4:ENST00000389194.7:ENST00000361371.10:ENST00000389195.7	protein_coding	protein_coding	protein_coding	protein_coding	12	131	2	1.99521	2.228495	2.46178	0.00214597	0.00159317	0.0430581	0.0364566
chr1	6214367	6214464	5236	0	+	0.412371	(0.408,0.44]	chr1	1005	8	INTRON	INTRON	RNF207	ENSG00000158286.13	ENST00000377939.5:ENST00000496676.5:ENST00000483336.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	39	2	2.05947	2.228485	2.3975	0.040266	0.0333232	0.161534	0.134145
chr1	150366118	150366218	221716	0	+	0.42	(0.408,0.44]	chr1	25051	8	INTRON	INTRON	RPRD2	ENSG00000163125.16	ENST00000492220.1:ENST00000369068.5:ENST00000401000.8:ENST00000369067.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	39	2	2.05947	2.228485	2.3975	0.040266	0.0333232	0.161534	0.134145
chr1	225418280	225418380	645656	0	-	0.42	(0.408,0.44]	chr1	76368	1	SS3_PROX	SS3_PROX:INTRON	LBR	ENSG00000143815.15	ENST00000272163.9:ENST00000338179.6:ENST00000651341.1:ENST00000487054.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	39	2	2.05947	2.228485	2.3975	0.040266	0.0333232	0.161534	0.134145
chr8	129393590	129393689	4059205	0	-	0.424242	(0.408,0.44]	chr8	369574	33	INTRON	INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1:ENST00000676273.1:ENST00000667643.1:ENST00000668791.1:ENST00000663716.1:ENST00000663572.1:ENST00000676148.1:ENST00000667962.1:ENST00000674877.1:ENST00000675316.1:ENST00000674656.1:ENST00000446592.7:ENST00000667341.1:ENST00000675186.1:ENST00000652971.1:ENST00000661447.1:ENST00000674863.1:ENST00000675498.1:ENST00000675527.1:ENST00000676108.1:ENST00000657647.1:ENST00000675589.1:ENST00000675913.1:ENST00000675109.1:ENST00000671632.1:ENST00000671311.1:ENST00000676099.1:ENST00000660652.1:ENST00000675522.1:ENST00000675183.1:ENST00000658861.1:ENST00000663991.1:ENST00000675044.1:ENST00000675435.1:ENST00000674639.1:ENST00000676069.1:ENST00000675532.1:ENST00000674762.1:ENST00000523151.6:ENST00000675948.1:ENST00000665364.1:ENST00000657251.1:ENST00000675166.1:ENST00000674883.1:ENST00000675867.1:ENST00000674580.1:ENST00000675393.1:ENST00000520048.1:ENST00000674906.1:ENST00000676030.1:ENST00000670588.1:ENST00000675072.1:ENST00000664936.1:ENST00000652914.1	lncRNA	lncRNA	lncRNA	lncRNA	3	39	2	2.05947	2.228485	2.3975	0.040266	0.0333232	0.161534	0.134145
chr6	124968494	124968593	2951532	0	+	0.50505	(0.476,0.515]	chr6	277668	47	INTRON	INTRON	RNF217	ENSG00000146373.17	ENST00000521654.7:ENST00000560949.5:ENST00000519971.1:ENST00000519565.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	89	2	1.5183	2.228445	2.93859	0.0223248	0.00143107	0.124527	0.0340925
chr11	34123855	34123955	4768384	0	+	0.51	(0.476,0.515]	chr11	441107	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NAT10	ENSG00000135372.10	ENST00000531159.6:ENST00000257829.8:ENST00000527971.5	protein_coding	protein_coding	protein_coding	protein_coding	5	60	2	1.91525	2.2284100000000002	2.54157	0.0232571	0.00697457	0.127416	0.0718189
chr8	37873579	37873679	3935683	0	-	0.39	(0.378,0.408]	chr8	360562	4	SS3_PROX	SS3_PROX:INTRON	RAB11FIP1	ENSG00000156675.16	ENST00000330843.9:ENST00000287263.8:ENST00000522727.5:ENST00000524118.1	protein_coding	protein_coding	protein_coding	protein_coding	10	121	2	1.88843	2.228405	2.56838	0.00664928	0.0010901	0.0738715	0.0303873
chr16	30195921	30196019	6337018	0	+	0.561224	(0.515,0.57]	chr16	607295	3	INTRON	INTRON	SLX1A	ENSG00000132207.18	ENST00000251303.11:ENST00000565081.1:ENST00000345535.8:ENST00000563995.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	86	2	1.80295	2.2282900000000003	2.65363	0.00965183	0.00105762	0.0826279	0.0299618
chr2	68178951	68179047	1145781	0	-	0.375	(0.35,0.378]	chr2	122367	2	UTR3	UTR3:EXON_MRNA	PPP3R1	ENSG00000221823.11	ENST00000234310.8	protein_coding	protein_coding	protein_coding	protein_coding	16	200	2	1.89149	2.228175	2.56486	0.00431566	1.44739e-4	0.0578936	0.0104652
chr5	14693343	14693442	2321180	0	+	0.30303	(0.28,0.32]	chr5	224848	4	UTR3	UTR3:EXON_MRNA	OTULIN	ENSG00000154124.5	ENST00000284274.5:ENST00000506417.1	protein_coding	protein_coding	protein_coding	protein_coding	7	110	2	2.21798	2.228125	2.23827	0.00901091	0.00601373	0.0851009	0.0674604
chr19	11096855	11096954	7016887	0	+	0.313131	(0.28,0.32]	chr19	697422	56	INTRON	INTRON	LDLR	ENSG00000130164.14	ENST00000557933.5:ENST00000558518.6:ENST00000545707.5:ENST00000535915.5:ENST00000455727.6:ENST00000557958.1:ENST00000560502.5:ENST00000558013.5:ENST00000252444.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	133	2	1.56729	2.228085	2.88888	0.0260617	8.6776e-4	0.133676	0.0269488
chr10	73246431	73246509	4648942	0	-	0.358974	(0.35,0.378]	chr10	427694	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DNAJC9	ENSG00000213551.7	ENST00000372950.6	protein_coding	protein_coding	protein_coding	protein_coding	6	79	2	2.13524	2.227925	2.32061	0.0130865	0.00545884	0.0934394	0.0669938
chr5	72220189	72220288	2639781	0	-	0.59596	(0.57,1]	chr5	250886	54	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	MRPS27	ENSG00000113048.18	ENST00000694990.1:ENST00000694989.1:ENST00000522042.2:ENST00000694988.1:ENST00000261413.10:ENST00000513900.6:ENST00000695403.1:ENST00000523654.6:ENST00000694998.1:ENST00000694997.1:ENST00000695298.1:ENST00000694996.1:ENST00000694995.1:ENST00000519143.6:ENST00000694994.1:ENST00000695297.1:ENST00000695296.1:ENST00000694993.1:ENST00000694992.1:ENST00000694991.1:ENST00000694999.1:ENST00000457646.9:ENST00000515226.5:ENST00000695404.1:ENST00000519874.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	63	2	1.99499	2.22791	2.46083	0.00255312	0.00160859	0.0466386	0.0365374
chr2	216499744	216499831	1016081	0	+	0.356322	(0.35,0.378]	chr2	108179	5	EXON_MRNA	EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPL37A	ENSG00000197756.10	ENST00000490649.1:ENST00000478153.1:ENST00000491306.6:ENST00000487233.1:ENST00000600880.5:ENST00000446558.5:ENST00000420712.1:ENST00000359681.3:ENST00000598925.5:ENST00000427280.6:ENST00000456586.5:ENST00000441179.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	86	2	2.10859	2.227905	2.34722	0.0272722	0.00312988	0.136494	0.0499376
chr14	102713247	102713343	5823748	0	+	0.53125	(0.515,0.57]	chr14	552522	19	INTRON	INTRON	RCOR1	ENSG00000089902.10	ENST00000262241.7:ENST00000558495.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	62	2	2.17039	2.227865	2.28534	0.00900252	0.0061678	0.0851009	0.067653
chr1	150383313	150383413	221888	0	+	0.51	(0.476,0.515]	chr1	25051	180	INTRON	INTRON	RPRD2	ENSG00000163125.16	ENST00000492220.1:ENST00000369068.5:ENST00000401000.8:ENST00000369067.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	82	2	1.89682	2.22783	2.55884	0.0158424	0.00186081	0.101453	0.039946
chr6	17670046	17670145	3065839	0	-	0.383838	(0.378,0.408]	chr6	284852	1	INTRON	INTRON	NUP153	ENSG00000124789.12	ENST00000613258.4:ENST00000537253.5:ENST00000262077.3	protein_coding	protein_coding	protein_coding	protein_coding	6	72	2	1.43665	2.227755	3.01886	0.0669652	7.99379e-4	0.183051	0.0258804
chr4	78912328	78912426	1982769	0	+	0.346939	(0.32,0.35]	chr4	198565	4	UTR3	UTR3:EXON_MRNA	BMP2K	ENSG00000138756.19	ENST00000502613.3	protein_coding	protein_coding	protein_coding	protein_coding	6	86	2	2.14793	2.227735	2.30754	0.0110079	0.0076357	0.0927187	0.075226
chr17	5425470	5425570	6551780	0	+	0.48	(0.476,0.515]	chr17	636010	1	SS3_PROX	SS3_PROX:INTRON	RPAIN	ENSG00000129197.15	ENST00000573577.5:ENST00000571558.5:ENST00000575599.5:ENST00000571043.5:ENST00000571613.5:ENST00000539417.6:ENST00000381208.9:ENST00000536255.6:ENST00000327154.10:ENST00000381209.8:ENST00000575112.5:ENST00000570883.5:ENST00000573126.1:ENST00000405578.8:ENST00000574003.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	37	2	2.13304	2.22767	2.3223	0.0519312	0.024866	0.159306	0.132101
chr3	47778812	47778911	1685047	0	-	0.515152	(0.476,0.515]	chr3	172122	55	INTRON	INTRON	SMARCC1	ENSG00000173473.11	ENST00000254480.10:ENST00000425518.5:ENST00000454240.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	37	2	2.13304	2.22767	2.3223	0.0519312	0.024866	0.159306	0.132101
chr6	147804428	147804528	2992043	0	+	0.5	(0.476,0.515]	chr6	280177	670	INTRON	INTRON	ENSG00000227681	ENSG00000227681.5	ENST00000427015.1	lncRNA	lncRNA	lncRNA	lncRNA	3	37	2	2.13304	2.22767	2.3223	0.0519312	0.024866	0.159306	0.132101
chr10	5431726	5431826	4384052	0	+	0.33	(0.32,0.35]	chr10	404406	21	INTRON	INTRON	NET1	ENSG00000173848.19	ENST00000355029.9	protein_coding	protein_coding	protein_coding	protein_coding	3	44	2	1.88909	2.2276350000000003	2.56618	0.0553737	0.0274185	0.165463	0.136498
chr21	21208950	21209050	7381099	0	+	0.35	(0.32,0.35]	chr21	752602	2100	INTRON	INTRON	NCAM2	ENSG00000154654.15	ENST00000400546.6	protein_coding	protein_coding	protein_coding	protein_coding	3	44	2	1.88909	2.2276350000000003	2.56618	0.0553737	0.0274185	0.165463	0.136498
chr7	156705552	156705652	3686115	0	-	0.33	(0.32,0.35]	chr7	341983	170	INTRON	INTRON	LMBR1	ENSG00000105983.23	ENST00000353442.10:ENST00000448926.5:ENST00000415428.5:ENST00000454132.5:ENST00000434503.5:ENST00000461603.5:ENST00000486837.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	44	2	1.88909	2.2276350000000003	2.56618	0.0553737	0.0274185	0.165463	0.136498
chr12	56240374	56240473	5333844	0	-	0.535354	(0.515,0.57]	chr12	509424	27	UTR3	UTR3:EXON_MRNA:INTRON	ANKRD52	ENSG00000139645.11	ENST00000267116.8:ENST00000548241.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	32	2	1.7074	2.22756	2.74772	0.0779432	0.0142192	0.196685	0.103638
chr17	44492255	44492354	6780729	0	-	0.565657	(0.515,0.57]	chr17	668697	170	INTRON	INTRON	GPATCH8	ENSG00000186566.13	ENST00000591680.6:ENST00000587228.5:ENST00000585614.1:ENST00000590041.5:ENST00000592746.5:ENST00000586037.5:ENST00000592154.1:ENST00000588554.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	32	2	1.7074	2.22756	2.74772	0.0779432	0.0142192	0.196685	0.103638
chr21	37081298	37081397	7404901	0	+	0.545455	(0.515,0.57]	chr21	754521	75	INTRON	INTRON	TTC3	ENSG00000182670.14	ENST00000492275.6:ENST00000418766.6:ENST00000485402.5:ENST00000450533.6:ENST00000438055.5:ENST00000696812.1:ENST00000696811.1:ENST00000463216.6:ENST00000481605.6:ENST00000540756.5:ENST00000494243.5:ENST00000399010.5:ENST00000411496.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	32	2	1.7074	2.22756	2.74772	0.0779432	0.0142192	0.196685	0.103638
chr16	89593124	89593221	6421112	0	+	0.402062	(0.378,0.408]	chr16	616407	15	INTRON	INTRON	CPNE7	ENSG00000178773.15	ENST00000319518.13:ENST00000268720.9:ENST00000529800.5:ENST00000568977.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	49	2	1.82258	2.227525	2.63247	0.0341279	0.0215745	0.135102	0.123836
chr21	8447052	8447152	7367028	0	+	0.51	(0.476,0.515]	chr21	751838	366	INTRON	INTRON	ENSG00000280441	ENSG00000280441.3	ENST00000651813.1:ENST00000652379.1	lncRNA	lncRNA	lncRNA	lncRNA	8	92	2	1.93124	2.22752	2.5238	0.00916342	0.00218334	0.0812949	0.0435144
chr12	132823094	132823189	5450164	0	-	0.589474	(0.57,1]	chr12	522111	4	INTRON	INTRON	GOLGA3:CHFR	ENSG00000090615.16:ENSG00000072609.18	ENST00000204726.9:ENST00000450791.8:ENST00000688114.1:ENST00000691696.1:ENST00000691636.1:ENST00000690897.1:ENST00000456883.7:ENST00000545875.4:ENST00000688251.1:ENST00000686751.1:ENST00000685580.1:ENST00000687165.1:ENST00000692384.1:ENST00000685120.1:ENST00000689813.1:ENST00000693112.1:ENST00000685450.1:ENST00000534967.2:ENST00000537317.2:ENST00000690178.1:ENST00000652603.2:ENST00000541341.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	24	2	1.79063	2.227505	2.66438	0.0356001	0.0171563	0.15159	0.104099
chr7	92131972	92132072	3568990	0	-	0.32	(0.28,0.32]	chr7	332488	1	SS3_PROX	SS3_PROX:INTRON	CYP51A1:ENSG00000289027	ENSG00000001630.18:ENSG00000289027.1	ENST00000691309.1:ENST00000003100.13:ENST00000692281.1:ENST00000693096.1:ENST00000450723.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	96	2	1.86684	2.227485	2.58813	0.0605813	9.04617e-4	0.171122	0.0276086
chr2	38331396	38331496	1098883	0	-	0.45	(0.44,0.476]	chr2	117856	120	INTRON	INTRON	ATL2	ENSG00000119787.14	ENST00000378954.9:ENST00000406122.5:ENST00000405384.6:ENST00000402054.5:ENST00000419554.6:ENST00000651368.1:ENST00000452935.6:ENST00000449130.5:ENST00000443098.5:ENST00000456736.5:ENST00000474535.2:ENST00000472097.1:ENST00000451483.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	60	2	1.98146	2.227425	2.47339	0.0186013	0.0090196	0.117264	0.080367
chr6	7286916	7287015	3053116	0	-	0.20202	[0,0.28]	chr6	283931	59	UTR3	UTR3:EXON_MRNA:INTRON	SSR1	ENSG00000124783.14	ENST00000474597.5:ENST00000650389.1:ENST00000475213.1:ENST00000244763.9	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	21	305	2	1.62129	2.2273899999999998	2.83349	0.00672665	4.2467e-4	0.0738715	0.0189958
chr4	88780764	88780864	2200188	0	-	0.28	[0,0.28]	chr4	215931	2	SS5_PROX	SS5_PROX:INTRON	FAM13A	ENSG00000138640.15	ENST00000395002.6:ENST00000264344.10:ENST00000503556.5:ENST00000511976.5:ENST00000508369.5:ENST00000513837.5:ENST00000504836.5:ENST00000507352.1:ENST00000502459.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	54	2	2.20927	2.227365	2.24546	0.0794763	0.0206502	0.19979	0.122348
chr17	81684545	81684603	6690993	0	+	0.637931	(0.57,1]	chr17	653999	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HGS	ENSG00000185359.14	ENST00000677161.1:ENST00000678096.1:ENST00000679191.1:ENST00000676546.1:ENST00000678387.1:ENST00000679170.1:ENST00000677109.1:ENST00000677484.1:ENST00000678115.1:ENST00000677243.1:ENST00000677044.1:ENST00000679336.1:ENST00000678196.1:ENST00000676462.1:ENST00000576393.5:ENST00000576498.5:ENST00000678105.1:ENST00000676478.1:ENST00000329138.9:ENST00000676721.1:ENST00000677209.1:ENST00000677225.1:ENST00000678866.1:ENST00000679275.1:ENST00000678541.1:ENST00000676729.1:ENST00000572392.2:ENST00000677012.1:ENST00000577012.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	36	2	1.64415	2.22736	2.81057	0.0342575	0.00169295	0.135558	0.0381936
chr3	10044654	10044751	1362376	0	+	0.298969	(0.28,0.32]	chr3	143486	4	INTRON	INTRON	FANCD2	ENSG00000144554.13	ENST00000682647.1:ENST00000287647.7:ENST00000676013.1:ENST00000675286.1:ENST00000419585.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	88	2	1.79739	2.22736	2.65733	0.0224995	0.0061571	0.124921	0.0676501
chr1	219203247	219203346	318674	0	+	0.282828	(0.28,0.32]	chr1	36461	41	INTRON	INTRON	LYPLAL1	ENSG00000143353.12	ENST00000460522.5:ENST00000366927.3:ENST00000366928.10:ENST00000477938.5:ENST00000463964.5:ENST00000483635.5:ENST00000474379.5:ENST00000469590.5:ENST00000478794.5:ENST00000475724.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	179	2	1.97257	2.22714	2.48171	0.00773991	4.96166e-4	0.0757402	0.0201536
chr17	28042587	28042676	6582517	0	+	0.41573	(0.408,0.44]	chr17	639824	1	SS3_PROX	SS3_PROX:INTRON	NLK	ENSG00000087095.13	ENST00000583517.1	protein_coding	processed_transcript	protein_coding	processed_transcript	13	151	2	2.04702	2.2271349999999996	2.40725	0.00298054	4.98683e-4	0.0489963	0.0202133
chr18	46092679	46092779	6965443	0	-	0.28	[0,0.28]	chr18	689401	1	SS5_PROX	SS5_PROX:INTRON	ATP5F1A	ENSG00000152234.16	ENST00000398752.11:ENST00000282050.6:ENST00000593152.6:ENST00000586592.5:ENST00000590665.5:ENST00000590156.5:ENST00000592364.5:ENST00000589252.5:ENST00000589869.5:ENST00000590406.5:ENST00000590324.5:ENST00000590448.5:ENST00000592989.1:ENST00000591981.5:ENST00000585650.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	88	2	1.85833	2.2270149999999997	2.5957	0.0378973	0.00656974	0.141283	0.0736092
chr1	15644845	15644945	33761	0	+	0.55	(0.515,0.57]	chr1	4112	8	INTRON	INTRON	DDI2	ENSG00000197312.12	ENST00000480945.6:ENST00000320153.10:ENST00000483899.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	32	2	2.11313	2.227	2.34087	0.0469761	0.0256725	0.151917	0.133676
chr1	65151039	65151139	134654	0	+	0.53	(0.515,0.57]	chr1	15302	15	INTRON	INTRON	AK4	ENSG00000162433.15	ENST00000545314.5:ENST00000497030.5:ENST00000470888.6:ENST00000546702.5:ENST00000395334.6:ENST00000327299.8:ENST00000474968.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	32	2	2.11313	2.227	2.34087	0.0469761	0.0256725	0.151917	0.133676
chr10	28543957	28544057	4413913	0	+	0.53	(0.515,0.57]	chr10	407148	55	INTRON	INTRON	WAC	ENSG00000095787.24	ENST00000680735.1:ENST00000375664.8:ENST00000428935.6:ENST00000651598.1:ENST00000628285.3:ENST00000681112.1:ENST00000679570.1:ENST00000375646.5:ENST00000354911.9:ENST00000347934.8:ENST00000420266.6:ENST00000651885.1:ENST00000651441.1:ENST00000679398.1:ENST00000424454.5:ENST00000442148.6:ENST00000448193.5:ENST00000414108.6:ENST00000679428.1:ENST00000439676.5:ENST00000345541.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	32	2	2.11313	2.227	2.34087	0.0469761	0.0256725	0.151917	0.133676
chr11	46633453	46633551	4784834	0	+	0.530612	(0.515,0.57]	chr11	442604	6	INTRON	INTRON	ATG13	ENSG00000175224.17	ENST00000580238.5:ENST00000581416.5:ENST00000529655.5:ENST00000533325.5:ENST00000683050.1:ENST00000583249.5:ENST00000581438.5:ENST00000526508.5:ENST00000530500.5:ENST00000577256.5:ENST00000578626.5:ENST00000524625.5:ENST00000534610.5:ENST00000582547.5:ENST00000359513.8:ENST00000528494.5:ENST00000395549.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	32	2	2.11313	2.227	2.34087	0.0469761	0.0256725	0.151917	0.133676
chr11	61327201	61327297	4956446	0	-	0.552083	(0.515,0.57]	chr11	465747	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DDB1	ENSG00000167986.15	ENST00000301764.12:ENST00000680367.1:ENST00000681803.1:ENST00000680717.1:ENST00000679712.1:ENST00000680357.1:ENST00000680075.1:ENST00000679588.1:ENST00000680602.1:ENST00000680881.1:ENST00000681188.1:ENST00000535283.6:ENST00000681935.1:ENST00000680250.1:ENST00000540166.5:ENST00000679855.1:ENST00000681368.1:ENST00000543658.5:ENST00000545930.5:ENST00000681067.1:ENST00000680096.1:ENST00000543162.2:ENST00000537120.5:ENST00000539426.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	32	2	2.11313	2.227	2.34087	0.0469761	0.0256725	0.151917	0.133676
chr12	46401390	46401489	5124708	0	+	0.555556	(0.515,0.57]	chr12	483424	94	INTRON	INTRON	ENSG00000257261	ENSG00000257261.7	ENST00000687751.1:ENST00000667191.1:ENST00000663959.1:ENST00000666025.1:ENST00000611243.2:ENST00000666942.1:ENST00000551503.5	lncRNA	lncRNA	lncRNA	lncRNA	3	32	2	2.11313	2.227	2.34087	0.0469761	0.0256725	0.151917	0.133676
chr17	73221692	73221791	6835110	0	-	0.545455	(0.515,0.57]	chr17	675246	86	INTRON	INTRON	FAM104A	ENSG00000133193.13	ENST00000403627.7:ENST00000405159.8:ENST00000583178.5:ENST00000580032.1:ENST00000581110.1:ENST00000579872.1:ENST00000583024.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	32	2	2.11313	2.227	2.34087	0.0469761	0.0256725	0.151917	0.133676
chr20	5603369	5603468	7312267	0	-	0.535354	(0.515,0.57]	chr20	744612	42	INTRON	INTRON	GPCPD1	ENSG00000125772.14	ENST00000379019.7:ENST00000481690.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	32	2	2.11313	2.227	2.34087	0.0469761	0.0256725	0.151917	0.133676
chr6	124978577	124978677	2951634	0	+	0.53	(0.515,0.57]	chr6	277674	66	INTRON	INTRON	RNF217	ENSG00000146373.17	ENST00000521654.7:ENST00000560949.5:ENST00000519565.5:ENST00000454842.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	32	2	2.11313	2.227	2.34087	0.0469761	0.0256725	0.151917	0.133676
chr16	71918502	71918598	6386842	0	+	0.489583	(0.476,0.515]	chr16	614102	10	INTRON	INTRON	IST1	ENSG00000182149.21	ENST00000544564.5:ENST00000541571.6:ENST00000535424.5:ENST00000606369.5:ENST00000537613.5:ENST00000424485.6:ENST00000566536.5:ENST00000378799.11:ENST00000538565.5:ENST00000329908.12:ENST00000538850.5:ENST00000541918.5:ENST00000378798.9:ENST00000534994.5:ENST00000539186.5:ENST00000439924.6:ENST00000626438.1:ENST00000545518.1:ENST00000456820.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	76	2	1.61324	2.22696	2.84068	0.026684	0.00217133	0.134419	0.0417893
chr7	30620992	30621092	3301712	0	+	0.27	[0,0.28]	chr7	306586	2	SS3_PROX	SS3_PROX:INTRON	GARS1	ENSG00000106105.15	ENST00000675051.1:ENST00000470392.2:ENST00000674643.1:ENST00000675529.1:ENST00000674807.1:ENST00000675810.1:ENST00000676088.1:ENST00000674815.1:ENST00000676403.1:ENST00000485784.2:ENST00000676210.1:ENST00000478124.6:ENST00000389266.8:ENST00000675693.1:ENST00000676259.1:ENST00000675651.1:ENST00000674616.1:ENST00000674737.1:ENST00000675859.1:ENST00000676140.1:ENST00000674969.1:ENST00000676164.1:ENST00000675886.1:ENST00000444666.6:ENST00000675587.1:ENST00000674851.1:ENST00000675863.1:ENST00000674734.1:ENST00000484093.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	74	2	1.67675	2.226955	2.77716	0.0352695	0.022039	0.150332	0.115395
chr2	20333463	20333563	1076613	0	-	0.39	(0.378,0.408]	chr2	115046	4	SS3_PROX	SS3_PROX:INTRON	PUM2	ENSG00000055917.16	ENST00000361078.7:ENST00000442400.5:ENST00000420234.5:ENST00000429419.6:ENST00000432105.5:ENST00000446940.5:ENST00000424110.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	96	2	2.20712	2.22691	2.2467	0.00978751	0.00196896	0.0835427	0.0411469
chrX	124007127	124007227	7717207	0	+	0.59	(0.57,1]	chrX	789468	30	INTRON	INTRON	STAG2	ENSG00000101972.20	ENST00000394477.5:ENST00000218089.13:ENST00000455404.5:ENST00000483575.5:ENST00000687810.1:ENST00000687071.1:ENST00000469481.1:ENST00000458700.5:ENST00000371160.5:ENST00000435103.5:ENST00000687852.1:ENST00000371145.8:ENST00000692982.1:ENST00000371157.7:ENST00000691035.1:ENST00000686802.1:ENST00000691383.1:ENST00000686127.1:ENST00000371144.7:ENST00000458176.5:ENST00000466748.5:ENST00000471107.1:ENST00000428941.5:ENST00000435215.5:ENST00000394478.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	32	2	1.79063	2.22684	2.66305	0.0356001	0.00327879	0.15159	0.0509077
chr7	157171841	157171940	3454272	0	+	0.515152	(0.476,0.515]	chr7	322918	10	INTRON	INTRON	UBE3C	ENSG00000009335.18	ENST00000611269.4:ENST00000348165.10:ENST00000389103.4	protein_coding	protein_coding	protein_coding	protein_coding	5	51	2	1.68907	2.2268350000000003	2.7646	0.0296007	0.0162075	0.142135	0.101453
chr7	151517290	151517390	3674900	0	-	0.52	(0.515,0.57]	chr7	341207	188	INTRON	INTRON	RHEB	ENSG00000106615.10	ENST00000262187.10:ENST00000472642.5:ENST00000478470.5:ENST00000496004.5:ENST00000470370.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	31	297	2	1.9944	2.22682	2.45924	5.42365e-4	1.79401e-5	0.0215026	0.00323409
chr6	57096497	57096595	2878119	0	+	0.387755	(0.378,0.408]	chr6	273232	31	INTRON	INTRON	ZNF451	ENSG00000112200.17	ENST00000515290.5:ENST00000510483.5:ENST00000357489.7:ENST00000370708.8:ENST00000370702.5:ENST00000444273.6:ENST00000370711.9:ENST00000508603.5:ENST00000370706.9:ENST00000491832.6:ENST00000370710.10:ENST00000502749.1:ENST00000504603.1:ENST00000509071.5:ENST00000510989.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	131	2	2.1245	2.226815	2.32913	0.00724232	5.1601e-4	0.0729826	0.0203753
chr20	455759	455859	7303165	0	-	0.5	(0.476,0.515]	chr20	743474	45	INTRON	INTRON	TBC1D20	ENSG00000125875.15	ENST00000680792.1:ENST00000354200.5:ENST00000461304.5:ENST00000681539.1:ENST00000679741.1:ENST00000680990.1:ENST00000681129.1:ENST00000681414.1:ENST00000681441.1:ENST00000680284.1:ENST00000681777.1:ENST00000681389.1:ENST00000679895.1:ENST00000680491.1:ENST00000679451.1:ENST00000679953.1:ENST00000461188.6:ENST00000680521.1:ENST00000681551.1:ENST00000679973.1:ENST00000680911.1:ENST00000679944.1:ENST00000681636.1:ENST00000680106.1:ENST00000494633.1:ENST00000680050.1:ENST00000681742.1:ENST00000680515.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	45	2	1.96833	2.2268	2.48527	0.03496	0.0195007	0.13747500000000001	0.119967
chr14	102625213	102625313	5822859	0	+	0.42	(0.408,0.44]	chr14	552490	315	INTRON	INTRON	RCOR1	ENSG00000089902.10	ENST00000262241.7	protein_coding	protein_coding	protein_coding	protein_coding	18	202	2	2.06256	2.2267349999999997	2.39091	7.20838e-4	5.52525e-4	0.0245203	0.0216254
chr4	55966129	55966219	1961909	0	+	0.366667	(0.35,0.378]	chr4	196755	4	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	CEP135	ENSG00000174799.11	ENST00000257287.5:ENST00000515081.1:ENST00000506202.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	110	2	2.09944	2.22673	2.35402	0.00596483	0.00266508	0.0674604	0.0476626
chr10	119079727	119079827	4704916	0	-	0.39	(0.378,0.408]	chr10	434016	54	INTRON	INTRON	EIF3A	ENSG00000107581.13	ENST00000369144.8:ENST00000541549.2	protein_coding	protein_coding	protein_coding	protein_coding	8	96	2	1.88928	2.226705	2.56413	0.00958693	0.0024299	0.0866052	0.0444645
chr10	125077703	125077803	4713506	0	-	0.63	(0.57,1]	chr10	434897	382	INTRON	INTRON	CTBP2	ENSG00000175029.17	ENST00000337195.9:ENST00000411419.6:ENST00000494626.6:ENST00000531469.5:ENST00000460976.5:ENST00000476817.1:ENST00000530884.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	38	2	2.07956	2.22661	2.37366	0.013114	0.00373392	0.0998629	0.0535844
chr1	156129227	156129326	230568	0	+	0.59596	(0.57,1]	chr1	27175	19	INTRON	INTRON	LMNA	ENSG00000160789.24	ENST00000502751.5:ENST00000368301.6:ENST00000676385.2:ENST00000675939.1:ENST00000675667.1:ENST00000675989.1:ENST00000676283.1:ENST00000674720.1:ENST00000496738.6:ENST00000674518.1:ENST00000676208.1:ENST00000674600.1:ENST00000675874.1:ENST00000676434.1:ENST00000684195.1:ENST00000683032.1:ENST00000682650.1:ENST00000361308.9:ENST00000368300.9:ENST00000675881.1:ENST00000675455.1:ENST00000677389.1:ENST00000470199.2:ENST00000469565.6:ENST00000368299.7:ENST00000502357.5:ENST00000448611.6:ENST00000515459.5:ENST00000675431.1:ENST00000368297.5:ENST00000504687.6:ENST00000473598.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	20	2	1.91937	2.2266	2.53383	0.0468438	0.02547	0.167716	0.12011
chr2	135754856	135754936	876067	0	+	0.575	(0.57,1]	chr2	98070	2	INTRON	INTRON	UBXN4	ENSG00000144224.17	ENST00000426921.5:ENST00000272638.14:ENST00000416538.5:ENST00000470687.1:ENST00000490163.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	20	2	1.91937	2.2266	2.53383	0.0468438	0.02547	0.167716	0.12011
chr22	40322949	40323045	7519660	0	+	0.625	(0.57,1]	chr22	768231	2	CDS	CDS:EXON_MRNA	TNRC6B	ENSG00000100354.21	ENST00000301923.13:ENST00000402203.5:ENST00000454349.7:ENST00000335727.13	protein_coding	protein_coding	protein_coding	protein_coding	3	20	2	1.91937	2.2266	2.53383	0.0468438	0.02547	0.167716	0.12011
chr3	46932717	46932817	1679588	0	-	0.58	(0.57,1]	chr3	171425	68	INTRON	INTRON	CCDC12	ENSG00000160799.12	ENST00000425441.5:ENST00000683445.1:ENST00000292314.6:ENST00000605358.5:ENST00000488069.5:ENST00000603885.5:ENST00000446836.5:ENST00000494655.5:ENST00000604164.5:ENST00000604181.1:ENST00000605875.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	20	2	1.91937	2.2266	2.53383	0.0468438	0.02547	0.167716	0.12011
chr5	28839739	28839839	2330147	0	+	0.46	(0.44,0.476]	chr5	225135	292	INTRON	INTRON	LINC02109	ENSG00000259786.7	ENST00000658190.1	lncRNA	lncRNA	lncRNA	lncRNA	6	70	2	1.90375	2.226595	2.54944	0.0156406	0.00591346	0.101393	0.0694038
chr16	70434354	70434454	6511418	0	-	0.46	(0.44,0.476]	chr16	630693	114	INTRON	INTRON	ST3GAL2	ENSG00000157350.13	ENST00000342907.3:ENST00000566097.1:ENST00000567586.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	128	2	1.75865	2.22644	2.69423	0.0130473	1.73914e-4	0.093385	0.0114435
chr3	194427074	194427163	1890572	0	-	0.382022	(0.378,0.408]	chr3	189123	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ATP13A3	ENSG00000133657.17	ENST00000687055.1:ENST00000645538.1:ENST00000645319.2:ENST00000690810.1:ENST00000429136.7:ENST00000645621.1:ENST00000685123.1:ENST00000642744.2:ENST00000439040.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	12	139	2	2.19761	2.2263900000000003	2.25517	0.00430492	7.51846e-4	0.0577899	0.025162
chr17	82186914	82187011	6852183	0	-	0.546392	(0.515,0.57]	chr17	679037	19	INTRON	INTRON	CCDC57	ENSG00000176155.21	ENST00000694881.1:ENST00000389641.9:ENST00000694882.1:ENST00000665763.1:ENST00000578910.2:ENST00000392343.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	81	2	2.16051	2.22637	2.29223	0.0046825	0.00290031	0.0631419	0.047789
chr1	86896986	86897086	498940	0	-	0.47	(0.44,0.476]	chr1	59196	94	INTRON	INTRON	SELENOF	ENSG00000183291.18	ENST00000331835.10:ENST00000370554.5:ENST00000648872.1:ENST00000469566.5:ENST00000401030.4:ENST00000497861.5:ENST00000467557.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	50	2	2.21079	2.22634	2.24189	0.0194581	0.0193405	0.119831	0.108861
chr5	180516179	180516279	2562081	0	+	0.52	(0.515,0.57]	chr5	245082	202	INTRON	INTRON	CNOT6	ENSG00000113300.13	ENST00000261951.9:ENST00000393356.7:ENST00000507016.1:ENST00000618123.4:ENST00000502447.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	71	2	2.06758	2.22626	2.38494	0.0140038	0.00164178	0.0959618	0.0373835
chr5	10389338	10389437	2318008	0	+	0.313131	(0.28,0.32]	chr5	224637	19	INTRON	INTRON	MARCHF6	ENSG00000145495.16	ENST00000274140.10:ENST00000449913.6:ENST00000502795.5:ENST00000511802.5:ENST00000503788.5:ENST00000640713.1:ENST00000510872.5:ENST00000507863.1:ENST00000506131.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	14	173	2	1.65128	2.226235	2.80119	0.00783682	0.00126236	0.079012	0.0324681
chr3	57595878	57595977	1706275	0	-	0.484848	(0.476,0.515]	chr3	175950	111	INTRON	INTRON	ARF4	ENSG00000168374.11	ENST00000303436.11:ENST00000496292.5:ENST00000489843.1:ENST00000486310.5:ENST00000483848.5:ENST00000463880.1:ENST00000493378.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	15	153	2	1.33864	2.22621	3.11378	0.0270703	3.20961e-5	0.123904	0.00452256
chr8	129567125	129567225	4060958	0	-	0.35	(0.32,0.35]	chr8	369672	100	INTRON	INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1:ENST00000676273.1:ENST00000667643.1:ENST00000668791.1:ENST00000663716.1:ENST00000663572.1:ENST00000676148.1:ENST00000667962.1:ENST00000674877.1:ENST00000675316.1:ENST00000674656.1:ENST00000446592.7:ENST00000667341.1:ENST00000675186.1:ENST00000652971.1:ENST00000661447.1:ENST00000674863.1:ENST00000675498.1:ENST00000675527.1:ENST00000676108.1:ENST00000657647.1:ENST00000675589.1:ENST00000675913.1:ENST00000675109.1:ENST00000671632.1:ENST00000671311.1:ENST00000676099.1:ENST00000660652.1:ENST00000675522.1:ENST00000675044.1:ENST00000675435.1:ENST00000674639.1:ENST00000676069.1:ENST00000675532.1:ENST00000674762.1:ENST00000523151.6:ENST00000675948.1:ENST00000665364.1:ENST00000657251.1:ENST00000675166.1:ENST00000674883.1:ENST00000675867.1:ENST00000674580.1:ENST00000675393.1:ENST00000520048.1:ENST00000674906.1:ENST00000676030.1:ENST00000670588.1:ENST00000675072.1:ENST00000664936.1:ENST00000652914.1:ENST00000657069.1:ENST00000674882.1	lncRNA	lncRNA	lncRNA	lncRNA	10	138	2	2.2005	2.226205	2.25191	0.00388192	0.00217694	0.0544134	0.0435144
chr12	64448131	64448230	5153348	0	+	0.393939	(0.378,0.408]	chr12	487849	1	UTR3	UTR3:EXON_MRNA	XPOT	ENSG00000184575.12	ENST00000332707.10	protein_coding	protein_coding	protein_coding	protein_coding	9	94	2	1.78596	2.226195	2.66643	0.00765583	0.00470023	0.0779344	0.0600108
chr1	246929233	246929333	681936	0	-	0.55	(0.515,0.57]	chr1	80043	105	INTRON	INTRON	AHCTF1	ENSG00000153207.16	ENST00000648844.2:ENST00000326225.3:ENST00000366508.5	protein_coding	protein_coding	protein_coding	protein_coding	13	129	2	1.99393	2.226155	2.45838	0.00258891	4.02165e-4	0.0469725	0.0185763
chr14	21257165	21257264	5835044	0	-	0.333333	(0.32,0.35]	chr14	554465	22	INTRON	INTRON	HNRNPC	ENSG00000092199.19	ENST00000336053.10:ENST00000553300.6:ENST00000554969.5:ENST00000556142.5:ENST00000554455.5:ENST00000430246.6:ENST00000553753.5:ENST00000555309.5:ENST00000555914.5:ENST00000557442.5:ENST00000556628.5:ENST00000556513.5:ENST00000555883.5:ENST00000557201.5:ENST00000556897.5:ENST00000420743.6:ENST00000554539.5:ENST00000554383.5:ENST00000555215.5:ENST00000555137.5:ENST00000554891.5:ENST00000556226.5:ENST00000555176.5:ENST00000553614.5:ENST00000557336.1:ENST00000557768.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	81	2	1.42542	2.22614	3.02686	0.0718205	8.86699e-4	0.187046	0.0271952
chr3	195952110	195952207	1896623	0	-	0.350515	(0.35,0.378]	chr3	189779	31	EXON_LNCRNA	EXON_LNCRNA:INTRON	ENSG00000260261	ENSG00000260261.2	ENST00000607976.2:ENST00000641484.1:ENST00000570130.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	5	66	2	1.95579	2.2261100000000003	2.49643	0.0234538	0.00752974	0.11867	0.0773151
chr12	104532883	104532983	5211443	0	+	0.4	(0.378,0.408]	chr12	493315	750	INTRON	INTRON	CHST11	ENSG00000171310.11	ENST00000303694.6:ENST00000547956.1:ENST00000549260.5:ENST00000546689.1	protein_coding	protein_coding	protein_coding	protein_coding	8	91	2	1.74904	2.22601	2.70298	0.0141676	0.00325723	0.0959618	0.0524329
chr3	47153836	47153936	1681503	0	-	0.28	[0,0.28]	chr3	171624	268	INTRON	INTRON	SETD2	ENSG00000181555.22	ENST00000691544.1:ENST00000638947.2:ENST00000409792.4:ENST00000412450.1	protein_coding	protein_coding	protein_coding	protein_coding	4	65	2	1.95669	2.22598	2.49527	0.0436497	0.0237518	0.14882	0.129075
chr8	63185248	63185348	3773156	0	+	0.26	[0,0.28]	chr8	349936	95	INTRON	INTRON	YTHDF3	ENSG00000185728.17	ENST00000617200.1:ENST00000623280.3:ENST00000539294.6:ENST00000621957.4:ENST00000517371.5:ENST00000615676.1:ENST00000621413.4:ENST00000612880.4:ENST00000617952.4:ENST00000621890.4:ENST00000619337.4:ENST00000613853.4:ENST00000621820.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	66	2	2.06426	2.225915	2.38757	0.0552962	0.0168952	0.165463	0.110899
chr12	132822905	132823000	5450162	0	-	0.505263	(0.476,0.515]	chr12	522111	2	INTRON	INTRON	GOLGA3:CHFR	ENSG00000090615.16:ENSG00000072609.18	ENST00000204726.9:ENST00000450791.8:ENST00000688114.1:ENST00000691696.1:ENST00000691636.1:ENST00000690897.1:ENST00000456883.7:ENST00000545875.4:ENST00000688251.1:ENST00000686751.1:ENST00000685580.1:ENST00000687165.1:ENST00000692384.1:ENST00000685120.1:ENST00000689813.1:ENST00000693112.1:ENST00000685450.1:ENST00000534967.2:ENST00000537317.2:ENST00000690178.1:ENST00000652603.2:ENST00000541341.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	14	162	2	1.84991	2.225815	2.60172	0.0067946	1.00083e-4	0.0711802	0.00844444
chr21	22367696	22367796	7386045	0	+	0.31	(0.28,0.32]	chr21	752727	1545	INTRON	INTRON	ENSG00000226043	ENSG00000226043.2	ENST00000667099.1:ENST00000654607.1:ENST00000444130.1	lncRNA	lncRNA	lncRNA	lncRNA	11	150	2	1.47985	2.2257000000000002	2.97155	0.0239637	6.03416e-4	0.129293	0.0226059
chr17	4065946	4066046	6709523	0	-	0.38	(0.378,0.408]	chr17	657364	1	SS5_PROX	SS5_PROX:INTRON	ZZEF1	ENSG00000074755.15	ENST00000381638.7:ENST00000572426.5:ENST00000570365.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	52	2	1.88729	2.225685	2.56408	0.0532327	0.00566993	0.162538	0.0678837
chr7	92824096	92824196	3573136	0	-	0.31	(0.28,0.32]	chr7	332810	489	INTRON	INTRON	CDK6	ENSG00000105810.10	ENST00000424848.3:ENST00000265734.8	protein_coding	protein_coding	protein_coding	protein_coding	3	48	2	1.91611	2.225665	2.53522	0.0539102	0.0310424	0.164153	0.143457
chr19	15319938	15320038	7147280	0	-	0.33	(0.32,0.35]	chr19	721965	396	INTRON	INTRON	BRD4	ENSG00000141867.19	ENST00000679869.1:ENST00000360016.9:ENST00000594841.5:ENST00000597315.5:ENST00000601941.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	127	2	1.69257	2.22559	2.75861	0.0122626	0.0012751	0.0969406	0.0326395
chr17	39481959	39482059	6607193	0	+	0.48	(0.476,0.515]	chr17	643264	98	INTRON	INTRON	CDK12	ENSG00000167258.15	ENST00000447079.6:ENST00000584632.5:ENST00000430627.6:ENST00000581593.1	protein_coding	protein_coding	protein_coding	protein_coding	4	50	2	1.86492	2.225535	2.58615	0.0550347	0.00515536	0.165463	0.0650394
chr3	136513556	136513656	1826061	0	-	0.34	(0.32,0.35]	chr3	183688	104	INTRON	INTRON	STAG1	ENSG00000118007.13	ENST00000383202.7:ENST00000236698.9:ENST00000434713.6:ENST00000483235.5:ENST00000629124.2:ENST00000487065.5:ENST00000462818.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	32	2	2.21917	2.225495	2.23182	0.068598	0.0641245	0.199279	0.184298
chr3	158124491	158124590	1538420	0	+	0.343434	(0.32,0.35]	chr3	160262	1	INTRON	INTRON	RSRC1	ENSG00000174891.14	ENST00000480820.5:ENST00000494002.5:ENST00000295930.7:ENST00000471994.5:ENST00000683733.1:ENST00000682221.1:ENST00000683831.1:ENST00000683516.1:ENST00000482822.3:ENST00000476899.6:ENST00000464171.5:ENST00000611884.5:ENST00000682164.1:ENST00000684604.1:ENST00000683899.1:ENST00000682500.1:ENST00000684683.1:ENST00000684512.1:ENST00000683394.1:ENST00000684156.1:ENST00000312179.10:ENST00000475278.6:ENST00000480119.5:ENST00000468344.5:ENST00000471911.5:ENST00000683137.1:ENST00000477788.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	32	2	2.21917	2.225495	2.23182	0.068598	0.0641245	0.199279	0.184298
chr3	191539193	191539293	1591323	0	+	0.33	(0.32,0.35]	chr3	164661	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	ENSG00000223812	ENSG00000223812.8	ENST00000657540.1:ENST00000439804.6:ENST00000663647.1:ENST00000668751.1:ENST00000666632.1:ENST00000664732.1:ENST00000662007.1:ENST00000641158.1:ENST00000664994.1:ENST00000669884.1:ENST00000642133.1:ENST00000656380.1:ENST00000641055.1:ENST00000662578.1:ENST00000661668.1:ENST00000658347.1:ENST00000661029.1:ENST00000651548.2:ENST00000669360.1:ENST00000653490.1:ENST00000656942.1:ENST00000666456.1:ENST00000668276.1:ENST00000671595.1:ENST00000660290.1	lncRNA	lncRNA	lncRNA	lncRNA	2	32	2	2.21917	2.225495	2.23182	0.068598	0.0641245	0.199279	0.184298
chr4	176320999	176321096	2083104	0	+	0.360825	(0.35,0.378]	chr4	205874	9	EXON_MRNA	EXON_MRNA:INTRON	SPCS3	ENSG00000129128.13	ENST00000503362.2:ENST00000507678.5:ENST00000513139.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	12	118	2	1.56652	2.225485	2.88445	0.0111966	0.00212567	0.0938632	0.041756
chr19	15325636	15325736	7147337	0	-	0.33	(0.32,0.35]	chr19	721965	453	INTRON	INTRON	BRD4	ENSG00000141867.19	ENST00000679869.1:ENST00000360016.9:ENST00000594841.5:ENST00000597315.5:ENST00000601941.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	70	2	2.22429	2.2254199999999997	2.22655	0.0226421	0.00823133	0.117557	0.0812969
chr21	38074657	38074757	7463628	0	-	0.37	(0.35,0.378]	chr21	760281	195	INTRON	INTRON	DSCR4	ENSG00000184029.9	ENST00000398948.5:ENST00000328264.7	lncRNA	lncRNA	lncRNA	lncRNA	11	111	2	1.25459	2.2253950000000002	3.1962	0.0424154	5.54078e-4	0.161763	0.0216641
chr18	800630	800730	6940590	0	-	0.35	(0.32,0.35]	chr18	686527	26	INTRON	INTRON	YES1	ENSG00000176105.14	ENST00000584307.5:ENST00000314574.5:ENST00000577611.1:ENST00000581960.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	72	2	1.32932	2.22539	3.12146	0.0540385	0.00630799	0.181713	0.0687526
chr11	83073132	83073230	4840437	0	+	0.326531	(0.32,0.35]	chr11	451463	12	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RAB30-DT	ENSG00000246067.9	ENST00000656330.1:ENST00000658004.1:ENST00000527627.5:ENST00000669459.2:ENST00000689041.1:ENST00000526795.1:ENST00000501011.8:ENST00000663168.1:ENST00000533528.1:ENST00000655468.1:ENST00000533708.1:ENST00000534499.1:ENST00000669058.1:ENST00000528156.1:ENST00000530270.2:ENST00000658917.1	lncRNA	lncRNA	lncRNA	lncRNA	5	70	2	2.06478	2.2253	2.38582	0.0147778	0.0138529	0.106702	0.0953077
chr17	31129406	31129506	6591478	0	+	0.34	(0.32,0.35]	chr17	641057	5	INTRON	INTRON	NF1	ENSG00000196712.20	ENST00000696138.1:ENST00000356175.7:ENST00000487476.5:ENST00000691014.1:ENST00000358273.9:ENST00000431387.8:ENST00000579081.5:ENST00000489712.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	70	2	2.06478	2.2253	2.38582	0.0147778	0.0138529	0.106702	0.0953077
chr2	31988491	31988591	1090896	0	-	0.4	(0.378,0.408]	chr2	116913	253	INTRON	INTRON	MEMO1:DPY30	ENSG00000162959.14:ENSG00000162961.14	ENST00000295065.9:ENST00000446765.5:ENST00000404530.6:ENST00000490459.5:ENST00000426310.6:ENST00000413686.1:ENST00000407893.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	79	2	1.78414	2.225285	2.66643	0.0144669	0.00470023	0.105142	0.0600108
chr12	104305866	104305966	5210199	0	+	0.43	(0.408,0.44]	chr12	493210	144	INTRON	INTRON	TXNRD1	ENSG00000198431.17	ENST00000525566.6:ENST00000526266.5:ENST00000503506.6:ENST00000526691.5:ENST00000531691.5:ENST00000526390.5:ENST00000531689.5:ENST00000529546.5:ENST00000529751.1:ENST00000528079.6:ENST00000526580.5:ENST00000529784.5:ENST00000524698.5:ENST00000527688.5:ENST00000527335.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	107	2	1.94531	2.2252549999999998	2.5052	0.0136489	5.05909e-4	0.0949306	0.0202328
chr1	109366871	109366960	520704	0	-	0.47191	(0.44,0.476]	chr1	61180	2	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	SORT1	ENSG00000134243.12	ENST00000538502.5:ENST00000256637.8:ENST00000493736.5:ENST00000482236.5:ENST00000633956.1:ENST00000483508.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	11	127	2	2.10752	2.2252400000000003	2.34296	0.0045456	7.10457e-4	0.0595107	0.0242715
chr11	114449541	114449639	4869073	0	+	0.316327	(0.28,0.32]	chr11	454422	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	REXO2	ENSG00000076043.11	ENST00000265881.10:ENST00000539754.5:ENST00000539275.5:ENST00000543131.5:ENST00000538198.5:ENST00000539119.5:ENST00000544827.5:ENST00000546316.5:ENST00000539788.5:ENST00000538403.5:ENST00000538791.3:ENST00000540492.1:ENST00000544507.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	47	2	2.1895	2.2252	2.2609	0.0671429	0.0227063	0.183051	0.124921
chr5	79617799	79617899	2398779	0	+	0.29	(0.28,0.32]	chr5	231686	2	SS5_PROX	SS5_PROX:INTRON	TENT2	ENSG00000164329.14	ENST00000505571.5:ENST00000423041.6:ENST00000504233.5:ENST00000453514.6:ENST00000428308.6:ENST00000515807.5:ENST00000296783.7:ENST00000514095.5:ENST00000508620.5:ENST00000503620.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	47	2	2.1895	2.2252	2.2609	0.0671429	0.0227063	0.183051	0.124921
chr9	4860124	4860175	4095551	0	+	0.294118	(0.28,0.32]	chr9	373215	1	CDS	CDS:EXON_MRNA	RCL1	ENSG00000120158.12	ENST00000381750.9:ENST00000442869.5:ENST00000381730.5:ENST00000381728.5:ENST00000448872.6	protein_coding	protein_coding	protein_coding	protein_coding	3	47	2	2.1895	2.2252	2.2609	0.0671429	0.0227063	0.183051	0.124921
chr7	5058770	5058868	3271849	0	+	0.387755	(0.378,0.408]	chr7	304071	6	INTRON	INTRON	RBAK	ENSG00000146587.18	ENST00000353796.7:ENST00000396912.2:ENST00000476992.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	46	2	1.72045	2.22519	2.72993	0.0424671	0.0188736	0.161763	0.108861
chrX	73852223	73852323	7838046	0	-	0.45	(0.44,0.476]	chrX	799611	149	EXON_LNCRNA	EXON_LNCRNA	XIST	ENSG00000229807.13	ENST00000429829.6	lncRNA	lncRNA	lncRNA	lncRNA	42	473	2	1.94375	2.225155	2.50656	7.25331e-4	8.67523e-6	0.0247646	0.00211418
chr6	87698315	87698415	3152882	0	-	0.33	(0.32,0.35]	chr6	294114	162	INTRON	INTRON	AKIRIN2	ENSG00000135334.9	ENST00000257787.6	protein_coding	protein_coding	protein_coding	protein_coding	3	46	2	2.1362	2.2251250000000002	2.31405	0.0517107	0.0291083	0.176696	0.128029
chrX	154706542	154706642	7914871	0	-	0.34	(0.32,0.35]	chrX	806091	61	INTRON	INTRON	GAB3	ENSG00000160219.12	ENST00000496390.5:ENST00000424127.3:ENST00000369575.7:ENST00000369568.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	61	2	1.42542	2.22506	3.0247	0.0718205	0.00671684	0.187046	0.0738715
chr10	101808894	101808992	4680879	0	-	0.489796	(0.476,0.515]	chr10	432006	6	INTRON	INTRON	OGA	ENSG00000198408.14	ENST00000439817.5:ENST00000361464.8:ENST00000357797.9:ENST00000370094.7:ENST00000429860.1	protein_coding	protein_coding	protein_coding	protein_coding	14	154	2	1.60088	2.224995	2.84911	0.0126509	6.96651e-5	0.0926667	0.00691946
chr9	131194344	131194441	4216340	0	+	0.319588	(0.28,0.32]	chr9	386654	17	INTRON	INTRON	NUP214	ENSG00000126883.19	ENST00000695497.1:ENST00000695498.1:ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000525980.5:ENST00000531929.5:ENST00000651334.1:ENST00000524578.6:ENST00000453861.6:ENST00000470765.5:ENST00000483497.6:ENST00000465486.6:ENST00000531600.1:ENST00000528114.1:ENST00000525384.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	13	193	2	2.0216	2.22499	2.42838	0.00641631	4.37783e-4	0.06958	0.018861
chr12	116208360	116208460	5424855	0	-	0.39	(0.378,0.408]	chr12	518271	272	INTRON	INTRON	MED13L	ENSG00000123066.9	ENST00000281928.9:ENST00000650226.1:ENST00000548743.2:ENST00000647567.1:ENST00000551197.2	protein_coding	protein_coding	protein_coding	protein_coding	6	75	2	2.13797	2.2248900000000003	2.31181	0.0124882	0.00548372	0.0923444	0.0671431
chr6	35875138	35875238	3088357	0	-	0.39	(0.378,0.408]	chr6	288860	4	INTRON	INTRON	SRPK1	ENSG00000096063.16	ENST00000373825.7:ENST00000423325.6:ENST00000346162.10:ENST00000361690.7:ENST00000510290.5:ENST00000373821.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	75	2	2.13797	2.2248900000000003	2.31181	0.0124882	0.00548372	0.0923444	0.0671431
chr1	2260649	2260749	2490	0	+	0.52	(0.515,0.57]	chr1	557	122	INTRON	INTRON	SKI	ENSG00000157933.10	ENST00000378536.5:ENST00000508416.1:ENST00000478223.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	32	2	1.79136	2.22485	2.65834	0.0638444	0.0187418	0.177811	0.117523
chr1	35459507	35459606	420894	0	-	0.545455	(0.515,0.57]	chr1	50772	29	INTRON	INTRON	KIAA0319L	ENSG00000142687.18	ENST00000325722.8:ENST00000426982.6:ENST00000485551.5:ENST00000440579.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	32	2	1.79136	2.22485	2.65834	0.0638444	0.0187418	0.177811	0.117523
chr16	16601880	16601980	6311881	0	+	0.53	(0.515,0.57]	chr16	604098	1019	INTRON	INTRON	ENSG00000260126	ENSG00000260126.2	ENST00000567465.2	lncRNA	lncRNA	lncRNA	lncRNA	3	32	2	1.79136	2.22485	2.65834	0.0638444	0.0187418	0.177811	0.117523
chr19	14548584	14548684	7025121	0	+	0.53	(0.515,0.57]	chr19	698985	23	INTRON	INTRON	TECR	ENSG00000099797.15	ENST00000600076.5:ENST00000598298.5:ENST00000642961.1:ENST00000215567.10:ENST00000600083.5:ENST00000598987.5:ENST00000601652.5:ENST00000593637.5:ENST00000594807.5:ENST00000598333.5:ENST00000596953.5:ENST00000597607.5:ENST00000596164.5:ENST00000598715.5:ENST00000598918.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	32	2	1.79136	2.22485	2.65834	0.0638444	0.0187418	0.177811	0.117523
chr4	153491984	153492084	2067508	0	+	0.53	(0.515,0.57]	chr4	204567	177	INTRON	INTRON	TMEM131L	ENSG00000121210.16	ENST00000409663.7:ENST00000445960.5:ENST00000409959.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	32	2	1.79136	2.22485	2.65834	0.0638444	0.0187418	0.177811	0.117523
chr12	109580346	109580446	5223629	0	+	0.51	(0.476,0.515]	chr12	494854	4	SS5_PROX	SS5_PROX:INTRON	MVK	ENSG00000110921.14	ENST00000539335.5:ENST00000546277.5:ENST00000535044.1:ENST00000447878.6:ENST00000228510.8:ENST00000539696.5:ENST00000537237.5:ENST00000545774.5:ENST00000392727.7:ENST00000539575.4:ENST00000625889.2:ENST00000629016.2:ENST00000636996.1:ENST00000636529.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	37	2	1.79693	2.224805	2.65268	0.0649782	0.0201975	0.179417	0.121243
chr13	32775052	32775150	5467239	0	+	0.295918	(0.28,0.32]	chr13	523912	1	UTR3	UTR3:EXON_MRNA	PDS5B	ENSG00000083642.19	ENST00000315596.15:ENST00000450460.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	64	2	1.81582	2.224805	2.63379	0.068122	0.00503861	0.184298	0.0646039
chr7	30578826	30578905	3513273	0	-	0.506329	(0.476,0.515]	chr7	327590	4	SS5_PROX	SS5_PROX:INTRON	GARS1-DT	ENSG00000196295.13	ENST00000426529.6:ENST00000656284.1:ENST00000660767.1:ENST00000584199.5:ENST00000667338.1:ENST00000581794.6:ENST00000581665.6:ENST00000663944.1:ENST00000584372.5:ENST00000582733.5:ENST00000667129.1:ENST00000584023.2:ENST00000579174.5:ENST00000689508.1:ENST00000580440.7:ENST00000454922.6:ENST00000667137.1:ENST00000657049.1:ENST00000578994.5:ENST00000583664.5:ENST00000582549.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	3	37	2	1.79693	2.224805	2.65268	0.0649782	0.0201975	0.179417	0.121243
chr1	9543241	9543341	17170	0	+	0.5	(0.476,0.515]	chr1	1570	31	INTRON	INTRON	SLC25A33	ENSG00000171612.7	ENST00000302692.7	protein_coding	protein_coding	protein_coding	protein_coding	4	51	2	1.99341	2.2246949999999996	2.45598	0.037389	0.00945755	0.155878	0.0817766
chr1	171501285	171501385	253372	0	+	0.42	(0.408,0.44]	chr1	30096	152	INTRON	INTRON	PRRC2C	ENSG00000117523.18	ENST00000647382.2:ENST00000367742.7:ENST00000476522.5:ENST00000338920.8:ENST00000467601.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	95	2	2.15507	2.224665	2.29426	0.00618525	0.00277178	0.0677395	0.04874
chr7	100350234	100350310	3364483	0	+	0.184211	[0,0.28]	chr7	314653	2	SS5_PROX	SS5_PROX:INTRON	STAG3L5P:STAG3L5P-PVRIG2P-PILRB	ENSG00000242294.6:ENSG00000272752.6	ENST00000473757.5:ENST00000470714.5:ENST00000310771.8:ENST00000483329.6:ENST00000444874.5	lncRNA	retained_intron	lncRNA:transcribed_unprocessed_pseudogene	retained_intron:lncRNA	9	148	2	1.62418	2.224665	2.82515	0.0298451	8.72498e-4	0.129138	0.0268436
chr15	41355638	41355738	6005006	0	+	0.38	(0.378,0.408]	chr15	571320	2	SS3_PROX	SS3_PROX:INTRON	NUSAP1	ENSG00000137804.14	ENST00000668273.1:ENST00000260359.10:ENST00000558123.5:ENST00000414849.6:ENST00000450592.6:ENST00000559596.6:ENST00000560747.5:ENST00000560177.5:ENST00000557840.5:ENST00000560898.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	72	2	1.71374	2.2246550000000003	2.73557	0.0274158	0.00360869	0.136498	0.0533855
chr17	46031280	46031377	6783226	0	-	0.247423	[0,0.28]	chr17	669144	15	UTR3	UTR3:EXON_MRNA	KANSL1	ENSG00000120071.15	ENST00000574590.6:ENST00000572904.6:ENST00000432791.7:ENST00000572218.5:ENST00000575318.6:ENST00000638275.1:ENST00000576870.5:ENST00000262419.10:ENST00000648792.1:ENST00000574963.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	142	2	1.22054	2.2246449999999998	3.22875	0.0712307	5.02502e-4	0.185599	0.020217099999999998
chr2	171532462	171532561	917426	0	+	0.393939	(0.378,0.408]	chr2	101030	88	INTRON	INTRON	CYBRD1	ENSG00000071967.12	ENST00000409484.5:ENST00000468308.1:ENST00000321348.9:ENST00000375252.3:ENST00000474182.1:ENST00000494587.1:ENST00000445146.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	59	2	1.54765	2.224635	2.90162	0.0334147	0.0113157	0.146709	0.0886121
chr2	176313330	176313429	925657	0	+	0.343434	(0.32,0.35]	chr2	101688	86	INTRON	INTRON	MTX2	ENSG00000128654.14	ENST00000420864.5:ENST00000249442.11:ENST00000423461.6:ENST00000443241.5:ENST00000452865.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	80	2	1.9182	2.224635	2.53107	0.0141462	0.00860484	0.103512	0.0784134
chrX	44924784	44924884	7649118	0	+	0.48	(0.476,0.515]	chrX	782726	504	INTRON	INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000675440.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000621147.5:ENST00000475233.1:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	60	2	1.63838	2.22457	2.81076	0.0555021	0.00203568	0.165463	0.0417667
chr13	32523164	32523264	5572696	0	-	0.43	(0.408,0.44]	chr13	532565	10	EXON_MRNA	EXON_MRNA:INTRON	N4BP2L2	ENSG00000244754.9	ENST00000357505.10:ENST00000399396.7:ENST00000504114.5:ENST00000446957.6:ENST00000674456.1:ENST00000674161.1:ENST00000674422.1:ENST00000674272.1:ENST00000674452.1:ENST00000674384.1:ENST00000505213.5:ENST00000674219.1:ENST00000267068.5:ENST00000674349.1:ENST00000674428.1:ENST00000503814.2:ENST00000674465.1:ENST00000674421.1:ENST00000674180.1:ENST00000674297.1:ENST00000674293.1:ENST00000674480.1:ENST00000674377.1:ENST00000674437.1:ENST00000674327.1:ENST00000674399.1:ENST00000674196.1:ENST00000674163.1:ENST00000511143.5:ENST00000674484.1:ENST00000475731.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	12	132	2	1.92664	2.2245150000000002	2.52239	0.00298892	0.00126655	0.0503738	0.0325433
chr22	21426432	21426532	7481263	0	+	0.47	(0.44,0.476]	chr22	763209	53	INTRON	INTRON	HIC2	ENSG00000169635.10	ENST00000407464.7:ENST00000407598.2	protein_coding	protein_coding	protein_coding	protein_coding	11	101	2	1.27731	2.2245150000000002	3.17172	0.0381726	5.10693e-4	0.158112	0.020816
chr5	141579878	141579969	2739784	0	-	0.516484	(0.515,0.57]	chr5	258124	3	INTRON	INTRON	DIAPH1	ENSG00000131504.18	ENST00000647433.1:ENST00000389054.8:ENST00000518047.5:ENST00000647330.1:ENST00000523100.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	15	146	2	2.16567	2.2245	2.28333	7.3147e-4	6.83844e-4	0.0246502	0.0239468
chr1	89551463	89551562	157667	0	+	0.232323	[0,0.28]	chr1	17171	11	INTRON	INTRON	LRRC8B	ENSG00000197147.15	ENST00000330947.7:ENST00000439853.6:ENST00000449440.5:ENST00000640258.1:ENST00000639264.1	protein_coding	protein_coding	protein_coding	protein_coding	3	53	2	2.00649	2.224455	2.44242	0.0491024	0.040391	0.161534	0.155269
chr16	30241133	30241231	6472517	0	-	0.561224	(0.515,0.57]	chr16	625558	5	INTRON	INTRON	NPIPB13	ENSG00000198064.14	ENST00000520915.5:ENST00000568053.5:ENST00000564502.1:ENST00000564219.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	99	2	2.05181	2.22445	2.39709	0.00490181	7.86638e-4	0.0609494	0.0258324
chr10	49976585	49976685	4432982	0	+	0.32	(0.28,0.32]	chr10	408715	4	SS5_PROX	SS5_PROX:INTRON	TIMM23B-AGAP6	ENSG00000178440.8	ENST00000651763.1:ENST00000651208.1:ENST00000429104.1:ENST00000444438.2	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	4	64	2	2.1895	2.224445	2.25939	0.0227063	0.021772	0.124921	0.11491
chr6	27125983	27126071	3072296	0	-	0.386364	(0.378,0.408]	chr6	285570	2	UTR3	UTR3:EXON_MRNA	H2BC11	ENSG00000124635.9	ENST00000607124.1	protein_coding	protein_coding	protein_coding	protein_coding	31	351	2	1.84939	2.2244349999999997	2.59948	8.41215e-4	6.32398e-5	0.0263691	0.00708233
chr17	41850191	41850290	6769605	0	-	0.252525	[0,0.28]	chr17	666406	18	UTR3	UTR3:EXON_MRNA	KLHL11	ENSG00000178502.6	ENST00000319121.4	protein_coding	protein_coding	protein_coding	protein_coding	3	53	2	1.95356	2.224415	2.49527	0.0463152	0.0436497	0.166231	0.14882
chr6	154746014	154746114	3001943	0	+	0.5	(0.476,0.515]	chr6	280737	36	INTRON	INTRON	SCAF8	ENSG00000213079.10	ENST00000367186.7:ENST00000417268.3:ENST00000461219.5:ENST00000367178.8:ENST00000464628.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	104	2	2.16055	2.224335	2.28812	0.00344676	0.00292015	0.0517761	0.0494641
chr2	149572331	149572431	1242820	0	-	0.38	(0.378,0.408]	chr2	131909	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	MMADHC	ENSG00000168288.13	ENST00000303319.10:ENST00000428879.5:ENST00000422782.2	protein_coding	protein_coding	protein_coding	protein_coding	13	155	2	2.07081	2.224305	2.3778	0.00563808	2.688e-4	0.0653997	0.0145349
chr1	155913435	155913533	564631	0	-	0.408163	(0.378,0.408]	chr1	67435	5	UTR3	UTR3:EXON_MRNA	KHDC4	ENSG00000132680.11	ENST00000368321.8:ENST00000368320.7	protein_coding	protein_coding	protein_coding	protein_coding	36	390	2	1.8195	2.2242349999999997	2.62897	7.24204e-4	5.29695e-5	0.0245647	0.00636842
chr22	20739842	20739941	7558459	0	-	0.515152	(0.476,0.515]	chr22	773045	31	INTRON	INTRON	PI4KA	ENSG00000241973.11	ENST00000255882.11:ENST00000494113.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	52	2	1.50151	2.224215	2.94692	0.054954	0.00794331	0.165463	0.0797304
chr2	55419079	55419169	1124393	0	-	0.344444	(0.32,0.35]	chr2	120590	1	UTR5	UTR5:EXON_MRNA	CCDC88A	ENSG00000115355.18	ENST00000263630.13:ENST00000436346.7:ENST00000336838.10:ENST00000642200.1:ENST00000413716.7:ENST00000647401.1:ENST00000645311.1:ENST00000646796.1:ENST00000645571.1:ENST00000645477.1:ENST00000645072.1:ENST00000644890.1:ENST00000644630.1:ENST00000647098.1:ENST00000642890.1:ENST00000647517.1:ENST00000645031.1:ENST00000645529.1:ENST00000644033.1:ENST00000644193.1:ENST00000647341.1:ENST00000644127.1:ENST00000644157.1:ENST00000471947.2:ENST00000642784.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	14	188	2	1.90648	2.22418	2.54188	0.00548799	3.02201e-4	0.0648867	0.0155054
chr20	47338756	47338856	7349332	0	-	0.48	(0.476,0.515]	chr20	749346	198	INTRON	INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000435836.5:ENST00000446894.5:ENST00000441977.1	protein_coding	protein_coding	protein_coding	protein_coding	5	63	2	2.13304	2.224165	2.31529	0.024866	0.00614783	0.132101	0.0676501
chr11	68553546	68553644	4818274	0	+	0.418367	(0.408,0.44]	chr11	448965	20	INTRON	INTRON	PPP6R3	ENSG00000110075.15	ENST00000529907.5:ENST00000534534.5:ENST00000524845.5:ENST00000393800.7:ENST00000265637.8:ENST00000524904.5:ENST00000393801.7:ENST00000265636.9:ENST00000529710.5:ENST00000527403.6	protein_coding	protein_coding	protein_coding	protein_coding	5	51	2	1.55035	2.22415	2.89795	0.0455214	0.0110735	0.164236	0.0873897
chr16	22504054	22504154	6322646	0	+	0.42	(0.408,0.44]	chr16	605439	119	INTRON	INTRON	NPIPB5	ENSG00000243716.11	ENST00000415654.5:ENST00000415833.6:ENST00000546168.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	51	2	1.55035	2.22415	2.89795	0.0455214	0.0110735	0.164236	0.0873897
chr20	3990877	3990977	7309161	0	-	0.28	[0,0.28]	chr20	744300	161	INTRON	INTRON	RNF24	ENSG00000101236.17	ENST00000336095.10:ENST00000358395.11:ENST00000545616.2	protein_coding	protein_coding	protein_coding	protein_coding	6	107	2	2.19624	2.224145	2.25205	0.0119684	0.0108335	0.0920781	0.0899583
chr17	59653781	59653879	6641909	0	+	0.459184	(0.44,0.476]	chr17	648550	21	INTRON	INTRON	CLTC	ENSG00000141367.12	ENST00000621829.4:ENST00000393043.5:ENST00000269122.8:ENST00000579456.5:ENST00000472129.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	58	2	1.70763	2.2241299999999997	2.74063	0.0190437	0.0176095	0.118994	0.105143
chr17	66347949	66348049	6662751	0	+	0.51	(0.476,0.515]	chr17	650324	80	INTRON	INTRON	PRKCA	ENSG00000154229.12	ENST00000413366.8:ENST00000578063.5:ENST00000284384.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	104	2	1.93124	2.22403	2.51682	0.00916342	9.59562e-4	0.0812949	0.0284801
chr3	47690215	47690312	1684147	0	-	0.402062	(0.378,0.408]	chr3	172052	4	INTRON	INTRON	SMARCC1	ENSG00000173473.11	ENST00000254480.10:ENST00000425518.5:ENST00000462198.5:ENST00000485737.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	46	2	1.78011	2.22398	2.66785	0.0356367	0.0224639	0.151629	0.11692
chr7	128765070	128765169	3408642	0	+	0.454545	(0.44,0.476]	chr7	318457	36	INTRON	INTRON	CALU	ENSG00000128595.17	ENST00000535011.6:ENST00000542996.6:ENST00000249364.9:ENST00000449187.6:ENST00000479257.5:ENST00000493278.1	protein_coding	protein_coding	protein_coding	protein_coding	6	69	2	1.70242	2.22394	2.74546	0.0282713	0.00326603	0.137721	0.0508595
chr5	890754	890854	2564614	0	-	0.44	(0.408,0.44]	chr5	245525	2	SS5_PROX	SS5_PROX:INTRON	BRD9	ENSG00000028310.18	ENST00000467963.6:ENST00000495265.5:ENST00000490814.6:ENST00000489816.5:ENST00000483173.5:ENST00000466684.5:ENST00000489093.1:ENST00000487688.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	61	2	1.8749	2.223925	2.57295	0.0264246	0.00640423	0.133676	0.0694534
chr1	149237876	149237976	548270	0	-	0.4	(0.378,0.408]	chr1	64451	364	INTRON	INTRON	ENSG00000215861	ENSG00000215861.7	ENST00000685012.1:ENST00000313342.8:ENST00000663163.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	5	64	2	1.94681	2.2239	2.50099	0.0457723	0.00245021	0.149888	0.0457892
chr1	32666028	32666128	65980	0	+	0.38	(0.378,0.408]	chr1	8429	33	INTRON	INTRON	RBBP4	ENSG00000162521.19	ENST00000414241.7:ENST00000527118.5:ENST00000373493.10:ENST00000401893.7:ENST00000524393.5:ENST00000492348.6:ENST00000526193.5:ENST00000373485.5:ENST00000477563.6:ENST00000458695.6:ENST00000445722.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	46	2	1.65821	2.2238350000000002	2.78946	0.0506302	0.0158859	0.17547	0.101453
chr10	71829958	71830053	4642624	0	-	0.4	(0.378,0.408]	chr10	427160	5	INTRON	INTRON	PSAP	ENSG00000197746.15	ENST00000394936.8	protein_coding	protein_coding	protein_coding	protein_coding	4	46	2	1.65821	2.2238350000000002	2.78946	0.0506302	0.0158859	0.17547	0.101453
chr5	178135828	178135928	2559225	0	+	0.4	(0.378,0.408]	chr5	244581	4	SS3_PROX	SS3_PROX:INTRON	RMND5B	ENSG00000145916.19	ENST00000515098.5:ENST00000507575.5:ENST00000313386.9:ENST00000502814.5:ENST00000512663.5:ENST00000507457.5:ENST00000508647.5:ENST00000542098.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	46	2	1.65821	2.2238350000000002	2.78946	0.0506302	0.0158859	0.17547	0.101453
chr14	101811834	101811934	5819002	0	+	0.37	(0.35,0.378]	chr14	551841	14	INTRON	INTRON	PPP2R5C	ENSG00000078304.20	ENST00000694906.1:ENST00000422945.6:ENST00000554442.5:ENST00000556068.5:ENST00000328724.9:ENST00000554504.1:ENST00000553890.1:ENST00000350249.7:ENST00000557621.5:ENST00000556946.1:ENST00000556307.5:ENST00000553730.5:ENST00000557714.1:ENST00000334743.9:ENST00000445439.7:ENST00000557095.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	58	2	1.97697	2.22381	2.47065	0.0386172	0.0109711	0.142656	0.092635
chr3	138569817	138569917	1829389	0	-	0.42	(0.408,0.44]	chr3	183872	1	SS5_PROX	SS5_PROX:INTRON	CEP70	ENSG00000114107.9	ENST00000264982.8:ENST00000489254.5:ENST00000484888.5:ENST00000474781.5:ENST00000481834.5:ENST00000468900.5:ENST00000462419.5:ENST00000478673.5:ENST00000464035.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	37	2	2.00768	2.22378	2.43988	0.0398236	0.035843	0.152216	0.143072
chr8	102382304	102382403	4012452	0	-	0.434343	(0.408,0.44]	chr8	367237	203	INTRON	INTRON	UBR5	ENSG00000104517.13	ENST00000520539.6:ENST00000220959.8:ENST00000521922.5	protein_coding	protein_coding	protein_coding	protein_coding	3	37	2	2.00768	2.22378	2.43988	0.0398236	0.035843	0.152216	0.143072
chr1	45830180	45830280	94079	0	+	0.43	(0.408,0.44]	chr1	12696	2	INTRON	INTRON	MAST2	ENSG00000086015.23	ENST00000470809.1:ENST00000361297.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	37	2	1.93243	2.223675	2.51492	0.0441194	0.0329839	0.162255	0.133816
chr15	64647884	64647984	6045965	0	+	0.41	(0.408,0.44]	chr15	575706	37	INTRON	INTRON	ZNF609	ENSG00000180357.10	ENST00000326648.5:ENST00000558680.5:ENST00000559364.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	37	2	1.93243	2.223675	2.51492	0.0441194	0.0329839	0.162255	0.133816
chr3	129266292	129266369	1499306	0	+	0.428571	(0.408,0.44]	chr3	156599	1	INTRON	INTRON	COPG1	ENSG00000181789.14	ENST00000314797.10:ENST00000515725.5:ENST00000513410.1:ENST00000509889.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	37	2	1.93243	2.223675	2.51492	0.0441194	0.0329839	0.162255	0.133816
chr6	145813902	145814002	3244073	0	-	0.42	(0.408,0.44]	chr6	301281	71	INTRON	INTRON	FBXO30	ENSG00000118496.5	ENST00000237281.5	protein_coding	protein_coding	protein_coding	protein_coding	3	37	2	1.93243	2.223675	2.51492	0.0441194	0.0329839	0.162255	0.133816
chr13	25308746	25308846	5457241	0	+	0.36	(0.35,0.378]	chr13	522884	1	SS3_PROX	SS3_PROX:INTRON	NUP58	ENSG00000139496.17	ENST00000481980.2:ENST00000490231.6:ENST00000695571.1:ENST00000477876.2:ENST00000695572.1:ENST00000463407.6:ENST00000695573.1:ENST00000381736.8:ENST00000695583.1:ENST00000465068.5:ENST00000460326.5:ENST00000466694.6:ENST00000381718.8:ENST00000695575.1:ENST00000695574.1:ENST00000495460.2:ENST00000381747.7:ENST00000695576.1:ENST00000394327.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	49	2	1.97646	2.223555	2.47065	0.0386172	0.0193942	0.142656	0.119831
chr10	68068171	68068268	4637876	0	-	0.525773	(0.515,0.57]	chr10	426440	6	UTR3	UTR3:EXON_MRNA:INTRON	HERC4	ENSG00000148634.16	ENST00000373700.9:ENST00000412272.6:ENST00000395198.7:ENST00000473533.6:ENST00000427635.6:ENST00000513996.5:ENST00000395185.7:ENST00000505760.5:ENST00000492996.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	53	2	1.2997	2.2235	3.1473	0.0561321	0.00397184	0.18407	0.0549214
chr13	25310515	25310613	5457262	0	+	0.438776	(0.408,0.44]	chr13	522895	1	INTRON	INTRON	NUP58	ENSG00000139496.17	ENST00000481980.2:ENST00000490231.6:ENST00000695571.1:ENST00000477876.2:ENST00000695572.1:ENST00000463407.6:ENST00000695573.1:ENST00000381736.8:ENST00000695583.1:ENST00000465068.5:ENST00000466694.6:ENST00000381718.8:ENST00000695575.1:ENST00000695574.1:ENST00000495460.2:ENST00000381747.7:ENST00000695576.1:ENST00000394327.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	74	2	1.74108	2.22347	2.70586	0.0424099	9.14702e-4	0.148082	0.027804
chr16	58610397	58610497	6496188	0	-	0.53	(0.515,0.57]	chr16	628638	105	INTRON	INTRON	CNOT1	ENSG00000125107.19	ENST00000317147.10:ENST00000569240.5:ENST00000567188.5:ENST00000441024.6:ENST00000565605.5:ENST00000564557.1:ENST00000569916.1:ENST00000565697.1:ENST00000569020.5:ENST00000568158.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	51	2	2.11724	2.223455	2.32967	0.0133671	0.0110335	0.0946278	0.0927187
chr10	17696474	17696574	4399797	0	+	0.43	(0.408,0.44]	chr10	406193	3	SS3_PROX	SS3_PROX:INTRON	STAM	ENSG00000136738.15	ENST00000377524.8:ENST00000377500.1:ENST00000494250.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	70	2	2.21857	2.22338	2.22819	0.0209591	0.00373083	0.112046	0.0561984
chr15	89302507	89302604	6096350	0	+	0.298969	(0.28,0.32]	chr15	580216	12	EXON_MRNA	EXON_MRNA:INTRON	FANCI	ENSG00000140525.20	ENST00000674831.1:ENST00000300027.12:ENST00000310775.12:ENST00000696717.1:ENST00000676003.1:ENST00000696718.1:ENST00000447611.6:ENST00000696719.1:ENST00000565522.5:ENST00000561894.1:ENST00000566895.5:ENST00000696721.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	88	2	1.76061	2.223315	2.68602	0.0253826	0.0055712	0.133676	0.0649112
chr10	74085806	74085905	4455391	0	+	0.212121	[0,0.28]	chr10	411437	19	INTRON	INTRON	VCL	ENSG00000035403.18	ENST00000623461.3:ENST00000372755.7:ENST00000624354.3:ENST00000211998.10:ENST00000478896.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	64	2	1.75741	2.223295	2.68918	0.0424454	0.0275571	0.161763	0.123904
chr16	80982515	80982614	6530447	0	-	0.151515	[0,0.28]	chr16	632643	3	EXON_MRNA	EXON_MRNA:INTRON	CMC2:ENSG00000278985	ENSG00000103121.9:ENSG00000278985.1	ENST00000219400.8:ENST00000563779.5:ENST00000566918.5:ENST00000486645.5:ENST00000570195.5:ENST00000566047.5:ENST00000561614.5:ENST00000566231.5:ENST00000569187.5:ENST00000570086.5:ENST00000564249.5:ENST00000565650.5:ENST00000567593.5:ENST00000568228.5:ENST00000565914.5:ENST00000565108.5:ENST00000565925.5:ENST00000564174.5:ENST00000565613.5:ENST00000569666.5:ENST00000562713.3:ENST00000562828.5:ENST00000630396.1:ENST00000565514.1:ENST00000623577.1	protein_coding	protein_coding	protein_coding:TEC	protein_coding:retained_intron:nonsense_mediated_decay:TEC:processed_transcript	4	64	2	1.75741	2.223295	2.68918	0.0424454	0.0275571	0.161763	0.123904
chr21	6989328	6989428	7425913	0	-	0.39	(0.378,0.408]	chr21	757520	23	INTRON	INTRON	ENSG00000280018	ENSG00000280018.4	ENST00000623165.3	lncRNA	lncRNA	lncRNA	lncRNA	5	64	2	1.78011	2.2232700000000003	2.66643	0.0356367	0.00470023	0.151629	0.0600108
chr7	107460324	107460424	3611988	0	-	0.44	(0.408,0.44]	chr7	336694	473	INTRON	INTRON	COG5	ENSG00000164597.15	ENST00000297135.9:ENST00000347053.8:ENST00000393603.7:ENST00000484237.5:ENST00000475638.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	69	2	1.62122	2.223165	2.82511	0.0394247	0.00189528	0.143072	0.0402736
chr1	169470983	169471082	582519	0	-	0.454545	(0.44,0.476]	chr1	70208	4	INTRON	INTRON	SLC19A2	ENSG00000117479.15	ENST00000236137.10:ENST00000367804.4:ENST00000646596.1	protein_coding	protein_coding	protein_coding	protein_coding	7	64	2	1.64357	2.22316	2.80275	0.0177224	0.0146513	0.11319	0.0982604
chr22	47711247	47711346	7540160	0	+	0.343434	(0.32,0.35]	chr22	770719	1	INTRON	INTRON	ENSG00000224271	ENSG00000224271.7	ENST00000664761.1:ENST00000651071.1:ENST00000650683.1:ENST00000651536.1:ENST00000652499.1:ENST00000652656.1:ENST00000652072.1:ENST00000651445.1:ENST00000423737.5:ENST00000650660.1:ENST00000651056.1:ENST00000652611.1:ENST00000652399.1:ENST00000652123.1:ENST00000651311.1:ENST00000651458.1:ENST00000652505.1:ENST00000652702.2:ENST00000652334.1:ENST00000652030.2:ENST00000651403.1:ENST00000652228.1:ENST00000651124.1:ENST00000650972.1:ENST00000651985.1:ENST00000651637.1:ENST00000650924.1:ENST00000651003.1:ENST00000652168.1:ENST00000651948.2:ENST00000651293.1:ENST00000651939.1:ENST00000650787.1:ENST00000651517.1:ENST00000651662.1:ENST00000652690.1:ENST00000651638.1:ENST00000670853.1:ENST00000652750.1:ENST00000652080.1:ENST00000651294.1:ENST00000652164.1:ENST00000651538.1:ENST00000650775.1:ENST00000651983.1:ENST00000651033.1:ENST00000651584.1:ENST00000650884.1:ENST00000651270.1	lncRNA	lncRNA	lncRNA	lncRNA	3	43	2	2.13945	2.22309	2.30673	0.0584434	0.0254517	0.167723	0.133676
chr3	177131262	177131362	1871782	0	-	0.35	(0.32,0.35]	chr3	187414	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	TBL1XR1	ENSG00000177565.18	ENST00000457928.7:ENST00000430069.5:ENST00000673974.1:ENST00000352800.10:ENST00000422442.6:ENST00000428970.5:ENST00000424913.5:ENST00000437738.5:ENST00000431421.5:ENST00000635794.1:ENST00000630796.2:ENST00000450267.5:ENST00000630833.2:ENST00000431674.5:ENST00000422066.5:ENST00000443315.5:ENST00000627825.2:ENST00000427349.5:ENST00000413084.5:ENST00000637137.1:ENST00000491623.2:ENST00000637544.1:ENST00000636478.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	43	2	2.13945	2.22309	2.30673	0.0584434	0.0254517	0.167723	0.133676
chr7	65071442	65071542	3321717	0	+	0.34	(0.32,0.35]	chr7	308844	4	SS5_PROX	SS5_PROX:INTRON	CCT6P3	ENSG00000234585.6	ENST00000419314.5:ENST00000426828.5:ENST00000452026.1	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript:transcribed_unprocessed_pseudogene	3	43	2	2.13945	2.22309	2.30673	0.0584434	0.0254517	0.167723	0.133676
chr9	93538824	93538924	4158926	0	+	0.33	(0.32,0.35]	chr9	379180	61	INTRON	INTRON	FAM120A	ENSG00000048828.17	ENST00000277165.11:ENST00000427765.1	protein_coding	protein_coding	protein_coding	protein_coding	3	43	2	2.13945	2.22309	2.30673	0.0584434	0.0254517	0.167723	0.133676
chr4	99007365	99007464	2002826	0	+	0.373737	(0.35,0.378]	chr4	199803	11	INTRON	INTRON	METAP1	ENSG00000164024.12	ENST00000510209.5:ENST00000296411.11:ENST00000507537.5:ENST00000506238.5:ENST00000503247.5:ENST00000510107.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	40	2	1.9755	2.223075	2.47065	0.0398617	0.0386172	0.161534	0.142656
chr15	40626521	40626616	6002768	0	+	0.347368	(0.32,0.35]	chr15	570905	5	INTRON	INTRON	KNL1	ENSG00000137812.21	ENST00000346991.9:ENST00000399668.7:ENST00000534204.1:ENST00000526913.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	58	2	2.09005	2.22298	2.35591	0.0330483	0.0128129	0.133816	0.0990564
chr3	23841388	23841488	1388084	0	+	0.33	(0.32,0.35]	chr3	145385	295	INTRON	INTRON	UBE2E1	ENSG00000170142.12	ENST00000306627.8:ENST00000346855.7:ENST00000495141.5:ENST00000442670.5:ENST00000424381.5:ENST00000467766.5:ENST00000475680.5:ENST00000452012.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	58	2	2.09005	2.22298	2.35591	0.0330483	0.0128129	0.133816	0.0990564
chr6	15493933	15494033	2825431	0	+	0.45	(0.44,0.476]	chr6	265224	60	INTRON	INTRON	JARID2	ENSG00000008083.14	ENST00000341776.7:ENST00000397311.4	protein_coding	protein_coding	protein_coding	protein_coding	7	87	2	1.38039	2.22296	3.06553	0.0762718	1.35514e-4	0.195539	0.0100405
chr7	148879913	148880012	3670720	0	-	0.40404	(0.378,0.408]	chr7	340632	87	INTRON	INTRON	EZH2	ENSG00000106462.12	ENST00000683292.1:ENST00000320356.7:ENST00000492143.5:ENST00000478654.5:ENST00000350995.6:ENST00000460911.5:ENST00000683744.1:ENST00000682317.1:ENST00000682263.1:ENST00000476773.5:ENST00000483967.5:ENST00000498186.5:ENST00000483012.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	16	186	2	1.88667	2.22288	2.55909	0.00237476	3.75028e-4	0.0448692	0.0179592
chr8	43021177	43021276	3745526	0	+	0.424242	(0.408,0.44]	chr8	348501	28	UTR3	UTR3:EXON_MRNA:INTRON	HOOK3	ENSG00000168172.9	ENST00000307602.9:ENST00000533338.1	protein_coding	protein_coding	protein_coding	protein_coding	5	60	2	2.17784	2.22288	2.26792	0.0179973	0.00916282	0.106756	0.0855292
chr10	87867842	87867941	4482968	0	+	0.30303	(0.28,0.32]	chr10	412543	9	INTRON	INTRON	PTEN	ENSG00000171862.12	ENST00000688308.1:ENST00000693560.1:ENST00000371953.8:ENST00000688158.1:ENST00000686459.1:ENST00000462694.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	88	2	1.4428	2.222855	3.00291	0.0712927	0.00110829	0.185716	0.0305035
chr19	910893	910992	7110915	0	-	0.525253	(0.515,0.57]	chr19	714174	79	INTRON	INTRON	R3HDM4	ENSG00000198858.10	ENST00000589428.5:ENST00000361574.10:ENST00000587975.2:ENST00000590454.2:ENST00000589445.1:ENST00000626716.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	15	138	2	1.85599	2.22285	2.58971	0.00236302	3.3987e-4	0.0446544	0.0170719
chr16	29518580	29518680	6470751	0	-	0.35	(0.32,0.35]	chr16	625147	127	INTRON	INTRON	ENSG00000288632	ENSG00000288632.1	ENST00000675579.1	lncRNA	lncRNA	lncRNA	lncRNA	11	151	2	2.0706	2.222815	2.37503	0.00327434	0.00184792	0.0526715	0.0388609
chr17	51115658	51115758	6796966	0	-	0.5	(0.476,0.515]	chr17	671024	356	INTRON	INTRON	SPAG9	ENSG00000008294.22	ENST00000262013.12:ENST00000505279.5:ENST00000357122.8	protein_coding	protein_coding	protein_coding	protein_coding	4	44	2	1.68092	2.22276	2.7646	0.0474026	0.0162075	0.169265	0.101453
chr17	75972327	75972426	6839803	0	-	0.494949	(0.476,0.515]	chr17	676367	116	INTRON	INTRON	ACOX1	ENSG00000161533.12	ENST00000293217.10:ENST00000572047.5:ENST00000573078.5:ENST00000301608.8:ENST00000591857.5:ENST00000588176.5:ENST00000589301.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	44	2	1.68092	2.22276	2.7646	0.0474026	0.0162075	0.169265	0.101453
chr1	21777361	21777461	396812	0	-	0.47	(0.44,0.476]	chr1	47345	192	INTRON	INTRON	USP48	ENSG00000090686.16	ENST00000400301.5:ENST00000308271.14:ENST00000529637.5:ENST00000421625.6:ENST00000527823.5:ENST00000532737.1:ENST00000489108.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	96	2	1.66481	2.222635	2.78046	0.00997526	0.0028389	0.0879541	0.0473151
chr3	31618288	31618388	1392258	0	+	0.19	[0,0.28]	chr3	145727	3	SS5_PROX	SS5_PROX:INTRON	STT3B	ENSG00000163527.10	ENST00000453168.5:ENST00000295770.4:ENST00000423527.5:ENST00000436236.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	53	2	2.05756	2.2225650000000003	2.38757	0.0552962	0.0352544	0.165463	0.150301
chr6	145903554	145903654	3244484	0	-	0.36	(0.35,0.378]	chr6	301322	4	UTR3	UTR3:EXON_MRNA:INTRON	SHPRH	ENSG00000146414.17	ENST00000367505.6:ENST00000275233.12:ENST00000438092.6:ENST00000629427.2:ENST00000433355.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	43	2	2.14264	2.2225650000000003	2.30249	0.0519726	0.0274795	0.176696	0.123904
chr12	31316175	31316275	5302756	0	-	0.26	[0,0.28]	chr12	504668	107	INTRON	INTRON	SINHCAF	ENSG00000139146.14	ENST00000337682.9:ENST00000539409.5:ENST00000454658.6:ENST00000542983.1:ENST00000539004.5:ENST00000543615.1:ENST00000536836.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	74	2	2.10688	2.222565	2.33825	0.0307985	0.0195228	0.143385	0.109483
chr5	54007011	54007111	2617874	0	-	0.36	(0.35,0.378]	chr5	248835	950	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	75	2	1.64329	2.22254	2.80179	0.0384351	0.00223906	0.142316	0.0435144
chr7	2365619	2365717	3269737	0	+	0.346939	(0.32,0.35]	chr7	303825	7	INTRON	INTRON	EIF3B	ENSG00000106263.19	ENST00000431643.5:ENST00000360876.9:ENST00000397011.2:ENST00000463229.2:ENST00000468250.2:ENST00000463026.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	107	2	1.87986	2.22253	2.5652	0.00765724	0.00559781	0.075364	0.0678837
chr19	10192237	10192336	7134853	0	-	0.434343	(0.408,0.44]	chr19	719261	78	INTRON	INTRON	DNMT1	ENSG00000130816.17	ENST00000340748.8:ENST00000359526.9:ENST00000592705.5:ENST00000679103.1:ENST00000677634.1:ENST00000676820.1:ENST00000677250.1:ENST00000677013.1:ENST00000677685.1:ENST00000676610.1:ENST00000678804.1:ENST00000679313.1:ENST00000677946.1:ENST00000586988.5:ENST00000588952.5:ENST00000588118.5:ENST00000592342.5:ENST00000592054.5:ENST00000586800.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	55	2	1.69979	2.222485	2.74518	0.0310346	0.0152229	0.13151	0.108535
chr5	91379275	91379328	2674951	0	-	0.245283	[0,0.28]	chr5	253117	1	INTRON	INTRON	ARRDC3	ENSG00000113369.9	ENST00000265138.4:ENST00000514284.5:ENST00000508948.5:ENST00000503192.5:ENST00000507075.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	53	2	1.8986	2.22242	2.54624	0.0531512	0.0388449	0.179787	0.143072
chr7	111340081	111340181	3621883	0	-	0.33	(0.32,0.35]	chr7	337093	3762	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	59	2	1.54741	2.22242	2.89743	0.0473733	0.0127608	0.169265	0.0926667
chr22	21976785	21976883	7561967	0	-	0.295918	(0.28,0.32]	chr22	773552	2	INTRON	INTRON	TOP3B	ENSG00000100038.20	ENST00000357179.10:ENST00000457179.5:ENST00000444502.5:ENST00000398793.6:ENST00000424393.5:ENST00000437929.5:ENST00000430142.5:ENST00000456075.5:ENST00000449704.5:ENST00000437103.1:ENST00000434517.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	129	2	1.69879	2.2224	2.74601	0.0205261	0.00100442	0.110999	0.0292217
chr10	91223877	91223976	4486322	0	+	0.323232	(0.32,0.35]	chr10	412965	5	INTRON	INTRON	PCGF5	ENSG00000180628.15	ENST00000614189.4:ENST00000543648.5:ENST00000336126.6:ENST00000490164.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	59	2	1.49965	2.222375	2.9451	0.0542985	0.011051	0.182243	0.0873897
chr17	22098602	22098702	6578649	0	+	0.3	(0.28,0.32]	chr17	639556	73	INTRON	INTRON	UBBP4	ENSG00000263563.7	ENST00000648259.1:ENST00000688301.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	13	188	2	2.18631	2.222315	2.25832	0.00354259	0.00111927	0.0529186	0.030733
chr12	69477207	69477307	5164321	0	+	0.23	[0,0.28]	chr12	489127	63	INTRON	INTRON	FRS2	ENSG00000166225.9	ENST00000547219.5:ENST00000550316.5:ENST00000547414.5:ENST00000548154.5:ENST00000549921.6:ENST00000550389.5:ENST00000550937.5:ENST00000549092.5:ENST00000550169.5	protein_coding	protein_coding	protein_coding	protein_coding	7	113	2	1.59598	2.22229	2.8486	0.0401089	0.00254189	0.143774	0.0465056
chr7	118185450	118185548	3393159	0	+	0.438776	(0.408,0.44]	chr7	317576	13	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	LSM8	ENSG00000128534.8	ENST00000424702.1:ENST00000422760.1:ENST00000249299.7:ENST00000411938.1	protein_coding	protein_coding	protein_coding	protein_coding	8	92	2	1.96132	2.22229	2.48326	0.00701866	0.00324772	0.0754576	0.0508595
chr2	39098844	39098944	1102116	0	-	0.4	(0.378,0.408]	chr2	118304	5	INTRON	INTRON	SOS1	ENSG00000115904.15	ENST00000692089.1:ENST00000402219.8:ENST00000690876.1:ENST00000395038.6:ENST00000691229.1:ENST00000689668.1:ENST00000690679.1:ENST00000461545.2:ENST00000451331.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	95	2	2.01851	2.222225	2.42594	0.00559022	0.00428028	0.0678837	0.0574861
chr22	19490652	19490752	7476943	0	+	0.38	(0.378,0.408]	chr22	762407	63	INTRON	INTRON	CDC45	ENSG00000093009.11	ENST00000407835.6:ENST00000437685.6:ENST00000483431.5:ENST00000438587.6:ENST00000672837.1:ENST00000263201.7:ENST00000404724.7:ENST00000487669.5:ENST00000428937.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	95	2	2.01851	2.222225	2.42594	0.00559022	0.00428028	0.0678837	0.0574861
chr3	10144418	10144517	1363140	0	+	0.373737	(0.35,0.378]	chr3	143671	10	INTRON	INTRON	VHL	ENSG00000134086.9	ENST00000696153.1:ENST00000256474.3:ENST00000696142.1:ENST00000345392.2:ENST00000696143.1:ENST00000477538.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	29	358	2	2.08022	2.2222150000000003	2.36421	9.50945e-4	5.71842e-5	0.0282186	0.00617842
chr4	80021062	80021161	2170024	0	-	0.555556	(0.515,0.57]	chr4	213885	17	INTRON	INTRON	ANTXR2	ENSG00000163297.18	ENST00000403729.7:ENST00000449651.5:ENST00000679571.1:ENST00000681710.1:ENST00000680913.1:ENST00000681115.1:ENST00000404191.5:ENST00000346652.10:ENST00000307333.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	63	2	1.75372	2.2221	2.69048	0.0386904	8.78655e-4	0.14279	0.0269932
chr4	1695701	1695801	2095054	0	-	0.52	(0.515,0.57]	chr4	207199	1	SS5_PROX	SS5_PROX:INTRON	SLBP	ENSG00000163950.13	ENST00000489418.6:ENST00000429429.6:ENST00000318386.8:ENST00000483348.5:ENST00000488267.5	protein_coding	protein_coding	protein_coding	protein_coding	10	103	2	1.57405	2.22207	2.87009	0.0221119	1.49863e-4	0.123903	0.011202
chr13	25341133	25341233	5457593	0	+	0.37	(0.35,0.378]	chr13	522982	11	UTR3	UTR3:EXON_MRNA:INTRON	NUP58	ENSG00000139496.17	ENST00000481980.2:ENST00000490231.6:ENST00000695571.1:ENST00000477876.2:ENST00000695572.1:ENST00000695573.1:ENST00000381736.8:ENST00000381718.8:ENST00000695575.1:ENST00000695574.1:ENST00000695576.1:ENST00000695577.1:ENST00000476553.2:ENST00000695578.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	152	2	1.83294	2.22206	2.61118	0.00401531	9.76258e-4	0.0578059	0.0284677
chr19	18993371	18993470	7153398	0	-	0.585859	(0.57,1]	chr19	723004	26	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	SUGP2	ENSG00000064607.17	ENST00000593795.5:ENST00000594773.5:ENST00000337018.10:ENST00000452918.7:ENST00000330854.15:ENST00000597163.5:ENST00000598863.1:ENST00000601879.5:ENST00000600239.5:ENST00000600377.1:ENST00000597280.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	13	79	2	1.81052	2.222055	2.63359	0.00601156	7.53662e-5	0.0700813	0.00777227
chr17	42475438	42475538	6611457	0	+	0.36	(0.35,0.378]	chr17	644092	41	INTRON	INTRON	ATP6V0A1	ENSG00000033627.17	ENST00000393829.6:ENST00000343619.9:ENST00000537728.5:ENST00000588901.5:ENST00000264649.10:ENST00000585525.5:ENST00000544137.5:ENST00000589727.5:ENST00000592324.1:ENST00000587375.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	67	2	2.10109	2.221935	2.34278	0.014685	0.0129593	0.0991015	0.0983813
chr13	106558331	106558431	5648833	0	-	0.33	(0.32,0.35]	chr13	538150	13	EXON_MRNA	EXON_MRNA:INTRON	ARGLU1	ENSG00000134884.15	ENST00000400198.8:ENST00000472226.2:ENST00000375926.5:ENST00000360629.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	34	449	2	2.07469	2.22186	2.36903	0.0010508	4.45684e-5	0.0295883	0.0054146
chr20	50915057	50915157	7355714	0	-	0.22	[0,0.28]	chr20	750099	54	INTRON	INTRON	ADNP	ENSG00000101126.18	ENST00000621696.5:ENST00000673732.1:ENST00000396029.8:ENST00000644386.1:ENST00000396032.8:ENST00000645081.1:ENST00000642364.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	83	2	1.62448	2.22185	2.81922	0.0302032	0.0197411	0.142761	0.109608
chr17	44947027	44947127	6781804	0	-	0.53	(0.515,0.57]	chr17	668963	103	INTRON	INTRON	KIF18B	ENSG00000186185.14	ENST00000587309.5:ENST00000593135.6	protein_coding	protein_coding	protein_coding	protein_coding	8	78	2	1.82788	2.221845	2.61581	0.0123396	0.00127505	0.0914341	0.0331722
chr19	28530204	28530304	7166397	0	-	0.48	(0.476,0.515]	chr19	724189	620	INTRON	INTRON	ENSG00000283403:ENSG00000267243	ENSG00000283403.1:ENSG00000267243.6	ENST00000592347.5:ENST00000593065.5	lncRNA	lncRNA	lncRNA	lncRNA	10	114	2	1.65322	2.22181	2.7904	0.0190363	2.22294e-4	0.108861	0.0131029
chr1	207354696	207354794	303609	0	+	0.285714	(0.28,0.32]	chr1	34939	2	INTRON	INTRON	CD55	ENSG00000196352.18	ENST00000695822.1:ENST00000695823.1:ENST00000695826.1:ENST00000695825.1:ENST00000695827.1:ENST00000645323.1:ENST00000391921.9:ENST00000367064.9:ENST00000314754.12:ENST00000644836.1:ENST00000476590.1:ENST00000465534.5:ENST00000618707.2:ENST00000635614.2:ENST00000695831.1:ENST00000634386.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	56	2	1.76378	2.221765	2.67975	0.0395495	0.0252505	0.161534	0.12011
chr17	64517626	64517725	6662006	0	+	0.424242	(0.408,0.44]	chr17	650211	4	INTRON	INTRON	CEP95	ENSG00000258890.8	ENST00000579860.5:ENST00000580188.1:ENST00000556440.7:ENST00000553956.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	13	150	2	2.18816	2.2217599999999997	2.25536	0.00216797	7.46238e-4	0.0417893	0.0250238
chr3	128070143	128070239	1496714	0	+	0.375	(0.35,0.378]	chr3	156306	6	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	SEC61A1	ENSG00000058262.10	ENST00000243253.8:ENST00000424880.2:ENST00000483956.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	68	2	1.87717	2.221755	2.56634	0.0555068	0.00190773	0.165463	0.0403772
chr1	75789554	75789653	144648	0	+	0.272727	[0,0.28]	chr1	16322	3	EXON_LNCRNA	EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RABGGTB	ENSG00000137955.16	ENST00000496055.5:ENST00000485459.5:ENST00000473406.5:ENST00000370826.3:ENST00000319942.8:ENST00000462042.5:ENST00000470201.5:ENST00000471759.5:ENST00000491266.5:ENST00000461653.5:ENST00000489450.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	126	2	1.62418	2.22174	2.8193	0.0298451	0.00285248	0.129138	0.0494641
chr20	63684825	63684923	7300153	0	+	0.397959	(0.378,0.408]	chr20	742924	18	INTRON	INTRON	RTEL1	ENSG00000258366.11	ENST00000370018.7:ENST00000360203.11:ENST00000508582.7:ENST00000318100.9:ENST00000482936.6:ENST00000687123.1:ENST00000647249.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	48	2	1.73164	2.221735	2.71183	0.0441773	0.0170789	0.149888	0.110899
chr4	105710165	105710257	2011911	0	+	0.293478	(0.28,0.32]	chr4	200420	6	INTRON	INTRON	GSTCD	ENSG00000138780.15	ENST00000512828.1:ENST00000394730.7:ENST00000515279.6:ENST00000515255.5:ENST00000484843.1:ENST00000507281.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	56	2	1.6633	2.22167	2.78004	0.0522231	0.0193244	0.177274	0.108861
chr4	32070075	32070175	1942149	0	+	0.35	(0.32,0.35]	chr4	194727	719	INTRON	INTRON	LINC02506	ENSG00000251129.3	ENST00000662669.1:ENST00000665582.2:ENST00000667252.2:ENST00000660373.2:ENST00000684849.1:ENST00000513211.2:ENST00000659613.1:ENST00000657576.1:ENST00000686730.1:ENST00000685407.1:ENST00000685455.1:ENST00000655951.1	lncRNA	lncRNA	lncRNA	lncRNA	10	126	2	1.85774	2.221635	2.58553	0.0061655	0.00263388	0.0712486	0.045806
chr8	31063199	31063297	3728229	0	+	0.285714	(0.28,0.32]	chr8	346535	36	INTRON	INTRON	WRN	ENSG00000165392.11	ENST00000650667.1:ENST00000298139.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	106	2	1.59601	2.221575	2.84714	0.0236042	0.00310758	0.12907	0.0498063
chr16	87395816	87395916	6416848	0	+	0.37	(0.35,0.378]	chr16	615618	21	INTRON	INTRON	MAP1LC3B	ENSG00000140941.14	ENST00000650688.1:ENST00000570189.5:ENST00000565788.1:ENST00000268607.10:ENST00000564844.1:ENST00000564638.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	40	2	2.04358	2.221485	2.39939	0.0458078	0.0329533	0.149888	0.145171
chr3	75764731	75764831	1748174	0	-	0.37	(0.35,0.378]	chr3	177549	225	INTRON	INTRON	ZNF717	ENSG00000227124.11	ENST00000648506.1:ENST00000491507.1:ENST00000477374.5:ENST00000652011.2:ENST00000478296.5:ENST00000471541.2:ENST00000468296.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	40	2	2.04358	2.221485	2.39939	0.0458078	0.0329533	0.149888	0.145171
chr22	20573380	20573479	7480031	0	+	0.515152	(0.476,0.515]	chr22	763022	44	INTRON	INTRON	MED15	ENSG00000099917.17	ENST00000433831.5:ENST00000292733.11:ENST00000263205.11:ENST00000406969.5:ENST00000382974.6:ENST00000492381.5:ENST00000478831.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	44	2	1.74317	2.22142	2.69967	0.0396373	0.0195838	0.161534	0.109483
chr2	126663051	126663151	862078	0	+	0.52	(0.515,0.57]	chr2	96613	44	INTRON	INTRON	GYPC	ENSG00000136732.16	ENST00000459787.1:ENST00000259254.9:ENST00000409836.3:ENST00000356887.12	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	80	2	2.05789	2.221415	2.38494	0.00786509	0.00164178	0.076155	0.0373835
chr16	58593177	58593276	6496013	0	-	0.454545	(0.44,0.476]	chr16	628630	39	INTRON	INTRON	CNOT1	ENSG00000125107.19	ENST00000317147.10:ENST00000569240.5:ENST00000567188.5:ENST00000441024.6:ENST00000565605.5:ENST00000564557.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	45	2	1.98146	2.221405	2.46135	0.0374637	0.0186013	0.140008	0.117264
chr16	89420161	89420249	6542895	0	-	0.568182	(0.515,0.57]	chr16	634268	2	EXON_LNCRNA	EXON_LNCRNA:INTRON	ANKRD11:ENSG00000261692	ENSG00000167522.17:ENSG00000261692.1	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1:ENST00000567166.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA:processed_transcript	5	51	2	2.17039	2.2213849999999997	2.27238	0.0161808	0.00900252	0.101453	0.0851009
chr12	121316084	121316183	5436801	0	-	0.333333	(0.32,0.35]	chr12	519847	57	INTRON	INTRON	ANAPC5	ENSG00000089053.13	ENST00000261819.8:ENST00000535641.5:ENST00000541887.5:ENST00000534976.5:ENST00000441917.6:ENST00000539079.5:ENST00000544314.5:ENST00000535482.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	53	2	2.06478	2.22136	2.37794	0.0498601	0.0147778	0.156383	0.106702
chr3	180958818	180958916	1569081	0	+	0.540816	(0.515,0.57]	chr3	162419	5	INTRON	INTRON	FXR1	ENSG00000114416.18	ENST00000305586.11:ENST00000475315.5:ENST00000357559.9:ENST00000468861.5:ENST00000491062.5:ENST00000445140.6:ENST00000472339.5:ENST00000480918.5:ENST00000461044.5:ENST00000498658.5:ENST00000476672.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	96	2	2.20213	2.221325	2.24052	0.00853365	6.90756e-4	0.0780043	0.0240212
chr1	31311058	31311157	61301	0	+	0.363636	(0.35,0.378]	chr1	7827	5	INTRON	INTRON	ZCCHC17	ENSG00000121766.16	ENST00000618216.4:ENST00000546109.5:ENST00000616393.4:ENST00000616859.4:ENST00000615916.4:ENST00000479629.5:ENST00000373714.5:ENST00000344147.10:ENST00000627541.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	40	2	1.90405	2.221305	2.53856	0.0482651	0.0326077	0.171852	0.133687
chr19	17320148	17320246	7029949	0	+	0.5	(0.476,0.515]	chr19	699994	6	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DDA1	ENSG00000130311.11	ENST00000593466.5:ENST00000359866.9:ENST00000596582.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	44	2	1.61586	2.221295	2.82673	0.0567093	0.0134403	0.185107	0.0946278
chr7	43900124	43900224	3526678	0	-	0.49	(0.476,0.515]	chr7	328841	106	INTRON	INTRON	URGCP	ENSG00000106608.17	ENST00000497914.5:ENST00000443736.5:ENST00000402306.7:ENST00000453200.6:ENST00000439702.5:ENST00000426198.5:ENST00000455877.5:ENST00000446958.1:ENST00000477768.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	44	2	1.61586	2.221295	2.82673	0.0567093	0.0134403	0.185107	0.0946278
chr3	172774322	172774422	1563464	0	+	0.48	(0.476,0.515]	chr3	161782	3	SS5_PROX	SS5_PROX:INTRON	ECT2	ENSG00000114346.14	ENST00000232458.9:ENST00000540509.5:ENST00000392692.8:ENST00000417960.5:ENST00000441497.6:ENST00000444250.1	protein_coding	protein_coding	protein_coding	protein_coding	9	104	2	2.12058	2.221275	2.32197	0.00686728	0.00133705	0.071646	0.0335955
chr1	25454882	25454979	48190	0	+	0.536082	(0.515,0.57]	chr1	5937	1	INTRON	INTRON	MACO1	ENSG00000204178.11	ENST00000399766.7:ENST00000374343.5:ENST00000647928.1:ENST00000470035.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	51	2	2.00468	2.221255	2.43783	0.0166344	0.00916404	0.110511	0.0812949
chr2	233851590	233851685	1343832	0	-	0.284211	(0.28,0.32]	chr2	140853	14	INTRON	INTRON	HJURP	ENSG00000123485.12	ENST00000432087.5:ENST00000441687.5:ENST00000411486.7:ENST00000414924.5:ENST00000454020.1:ENST00000453122.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	76	2	2.14534	2.22121	2.29708	0.0195087	0.0117054	0.109483	0.0962115
chr1	20764678	20764777	389633	0	-	0.434343	(0.408,0.44]	chr1	46537	71	INTRON	INTRON	HP1BP3	ENSG00000127483.19	ENST00000438032.6:ENST00000312239.10:ENST00000375003.6:ENST00000419948.5:ENST00000424732.5	protein_coding	protein_coding	protein_coding	protein_coding	4	51	2	1.74775	2.2211600000000002	2.69457	0.0735403	0.00331036	0.190238	0.0527031
chr20	5573514	5573614	7311958	0	-	0.41	(0.408,0.44]	chr20	744562	2	SS5_PROX	SS5_PROX:INTRON	GPCPD1	ENSG00000125772.14	ENST00000379019.7:ENST00000481038.5:ENST00000418646.5:ENST00000633552.1:ENST00000473797.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	51	2	1.74775	2.2211600000000002	2.69457	0.0735403	0.00331036	0.190238	0.0527031
chr11	86005446	86005545	5014193	0	-	0.484848	(0.476,0.515]	chr11	472970	16	INTRON	INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000630913.2:ENST00000528398.5:ENST00000356360.9:ENST00000534412.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	25	279	2	2.16743	2.221155	2.27488	6.01533e-4	1.15148e-4	0.0226059	0.00919871
chr10	68458105	68458205	4639629	0	-	0.42	(0.408,0.44]	chr10	426710	75	INTRON	INTRON	DNA2	ENSG00000138346.15	ENST00000358410.8:ENST00000551118.6:ENST00000399179.6:ENST00000399180.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	73	2	2.17784	2.22112	2.2644	0.00916282	0.00768371	0.0855292	0.0753803
chr19	8402994	8403065	7010478	0	+	0.549296	(0.515,0.57]	chr19	696089	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RAB11B	ENSG00000185236.12	ENST00000328024.11	protein_coding	protein_coding	protein_coding	protein_coding	5	52	2	2.11384	2.2211	2.32836	0.0126662	0.0118599	0.0982897	0.0899583
chr20	3891143	3891239	7226910	0	+	0.4375	(0.408,0.44]	chr20	734470	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	PANK2	ENSG00000125779.24	ENST00000497424.5:ENST00000316562.9:ENST00000495692.5:ENST00000610179.7:ENST00000643504.2:ENST00000336066.8:ENST00000646394.1:ENST00000621507.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	50	2	2.16746	2.22105	2.27464	0.024436	0.0158016	0.12011	0.109464
chr11	73075718	73075818	4982226	0	-	0.4	(0.378,0.408]	chr11	470743	595	INTRON	INTRON	FCHSD2	ENSG00000137478.15	ENST00000409418.9:ENST00000311172.11:ENST00000409314.5:ENST00000458644.6:ENST00000409853.5:ENST00000422375.1	protein_coding	protein_coding	protein_coding	protein_coding	4	47	2	1.58349	2.221015	2.85854	0.0653091	0.0107837	0.180158	0.0920575
chr12	123407897	123407994	5242822	0	+	0.360825	(0.35,0.378]	chr12	498222	3	UTR3	UTR3:EXON_MRNA	KMT5A	ENSG00000183955.14	ENST00000402868.8:ENST00000437519.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	144	2	2.14824	2.22097	2.2937	0.00327182	0.0015427	0.052643	0.0357086
chr19	15315639	15315739	7147237	0	-	0.47	(0.44,0.476]	chr19	721965	353	INTRON	INTRON	BRD4	ENSG00000141867.19	ENST00000679869.1:ENST00000360016.9:ENST00000594841.5:ENST00000597315.5:ENST00000601941.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	127	2	2.05633	2.22093	2.38553	0.00384449	9.57032e-4	0.0542786	0.0284484
chr2	32006886	32006986	1091080	0	-	0.46	(0.44,0.476]	chr2	116913	437	INTRON	INTRON	MEMO1:DPY30	ENSG00000162959.14:ENSG00000162961.14	ENST00000295065.9:ENST00000446765.5:ENST00000404530.6:ENST00000490459.5:ENST00000426310.6:ENST00000413686.1:ENST00000407893.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	91	2	2.05546	2.22091	2.38636	0.0047296	0.00467486	0.0631417	0.0600445
chr17	68038193	68038292	6669365	0	+	0.555556	(0.515,0.57]	chr17	650744	3	INTRON	INTRON	KPNA2	ENSG00000182481.10	ENST00000676857.1:ENST00000676594.1:ENST00000677827.1:ENST00000676622.1:ENST00000678054.1:ENST00000583269.5:ENST00000678388.1:ENST00000677918.1:ENST00000676902.1:ENST00000677419.1:ENST00000679346.1:ENST00000677223.1:ENST00000677695.1:ENST00000679078.1:ENST00000330459.8:ENST00000584026.6:ENST00000537025.6:ENST00000677086.1:ENST00000579754.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	39	2	1.69407	2.220895	2.74772	0.0459452	0.0142192	0.149888	0.103638
chr20	47282617	47282717	7348762	0	-	0.56	(0.515,0.57]	chr20	749299	4	SS3_PROX	SS3_PROX:INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000467200.6:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000468376.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	39	2	1.69407	2.220895	2.74772	0.0459452	0.0142192	0.149888	0.103638
chr1	168012583	168012683	249258	0	+	0.3	(0.28,0.32]	chr1	29602	74	INTRON	INTRON	DCAF6	ENSG00000143164.16	ENST00000432587.6:ENST00000367843.7:ENST00000470721.5:ENST00000367840.4:ENST00000312263.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	106	2	1.67134	2.2208550000000002	2.7703700000000002	0.0387947	8.96564e-4	0.143072	0.0273866
chr22	19095578	19095678	7551746	0	-	0.54	(0.515,0.57]	chr22	771903	57	INTRON	INTRON	DGCR2	ENSG00000070413.20	ENST00000537045.5:ENST00000545799.5:ENST00000263196.12:ENST00000389262.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	65	2	1.47702	2.2208449999999997	2.96467	0.0421022	8.94279e-4	0.148082	0.0273458
chr1	1567008	1567108	360244	0	-	0.59	(0.57,1]	chr1	41853	17	INTRON	INTRON	SSU72	ENSG00000160075.12	ENST00000291386.4:ENST00000378725.3:ENST00000359060.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	20	2	1.77365	2.2208300000000003	2.66801	0.0670385	0.0169968	0.183051	0.110899
chr1	32363064	32363160	414869	0	-	0.583333	(0.57,1]	chr1	50027	7	EXON_MRNA	EXON_MRNA:INTRON	FAM229A	ENSG00000225828.2	ENST00000416512.1:ENST00000415596.1	protein_coding	retained_intron	protein_coding	retained_intron:processed_transcript	3	20	2	1.77365	2.2208300000000003	2.66801	0.0670385	0.0169968	0.183051	0.110899
chr11	4093021	4093115	4725867	0	+	0.574468	(0.57,1]	chr11	437245	14	UTR3	UTR3:EXON_MRNA	STIM1	ENSG00000167323.12	ENST00000526596.2:ENST00000300737.8:ENST00000616714.4	protein_coding	protein_coding	protein_coding	protein_coding	3	20	2	1.77365	2.2208300000000003	2.66801	0.0670385	0.0169968	0.183051	0.110899
chr15	28213083	28213162	6122927	0	-	0.594937	(0.57,1]	chr15	583196	1	INTRON	INTRON	HERC2	ENSG00000128731.18	ENST00000261609.13	protein_coding	protein_coding	protein_coding	protein_coding	3	20	2	1.77365	2.2208300000000003	2.66801	0.0670385	0.0169968	0.183051	0.110899
chr18	12376568	12376668	6947143	0	-	0.58	(0.57,1]	chr18	687273	2	SS5_PROX	SS5_PROX:INTRON	AFG3L2	ENSG00000141385.12	ENST00000269143.8:ENST00000691970.1:ENST00000691179.1:ENST00000687337.1:ENST00000692497.1:ENST00000688199.1:ENST00000590811.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	20	2	1.77365	2.2208300000000003	2.66801	0.0670385	0.0169968	0.183051	0.110899
chr3	196831068	196831167	1596420	0	+	0.585859	(0.57,1]	chr3	165382	28	UTR3	UTR3:EXON_MRNA	PAK2	ENSG00000180370.10	ENST00000327134.7	protein_coding	protein_coding	protein_coding	protein_coding	3	20	2	1.77365	2.2208300000000003	2.66801	0.0670385	0.0169968	0.183051	0.110899
chr7	129927443	129927543	3637717	0	-	0.58	(0.57,1]	chr7	338226	15	INTRON	INTRON	UBE2H	ENSG00000186591.13	ENST00000355621.8:ENST00000649897.1:ENST00000473814.6:ENST00000496698.5:ENST00000472396.5:ENST00000480245.5:ENST00000490974.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	20	2	1.77365	2.2208300000000003	2.66801	0.0670385	0.0169968	0.183051	0.110899
chr7	139377254	139377354	3437769	0	+	0.61	(0.57,1]	chr7	320340	7	INTRON	INTRON	LUC7L2:FMC1-LUC7L2	ENSG00000146963.18:ENSG00000269955.2	ENST00000541170.7:ENST00000541515.3:ENST00000608368.5:ENST00000619796.4:ENST00000354926.9:ENST00000456182.5:ENST00000263545.7:ENST00000463912.5:ENST00000498518.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	20	2	1.77365	2.2208300000000003	2.66801	0.0670385	0.0169968	0.183051	0.110899
chr9	130856292	130856391	4215289	0	+	0.59596	(0.57,1]	chr9	386442	8	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000318560.6	protein_coding	protein_coding	protein_coding	protein_coding	3	20	2	1.77365	2.2208300000000003	2.66801	0.0670385	0.0169968	0.183051	0.110899
chr1	1271409	1271509	359174	0	-	0.45	(0.44,0.476]	chr1	41483	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	UBE2J2	ENSG00000160087.21	ENST00000450390.6:ENST00000349431.11:ENST00000347370.6:ENST00000400929.6:ENST00000464036.5:ENST00000360466.6:ENST00000400930.8:ENST00000473215.5:ENST00000435198.5:ENST00000509720.5:ENST00000491779.5:ENST00000466752.5:ENST00000503294.5:ENST00000477894.5:ENST00000422076.5:ENST00000502382.1:ENST00000461142.3:ENST00000488418.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	61	2	2.10892	2.22082	2.33272	0.0132897	0.0129984	0.0991656	0.0944742
chr15	57990832	57990931	6186778	0	-	0.373737	(0.35,0.378]	chr15	589738	3	INTRON	INTRON	ALDH1A2	ENSG00000128918.15	ENST00000537372.5:ENST00000249750.9:ENST00000347587.7:ENST00000430119.6:ENST00000558231.5:ENST00000559517.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	90	2	1.90784	2.22077	2.5337	0.0165983	0.0022093	0.102621	0.0435144
chr21	44041216	44041316	7415323	0	+	0.35	(0.32,0.35]	chr21	755795	29	INTRON	INTRON	TRAPPC10	ENSG00000160218.13	ENST00000291574.9:ENST00000380221.7:ENST00000422875.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	59	2	1.45026	2.220755	2.99125	0.0622478	0.00958447	0.194723	0.0820838
chr6	161054061	161054160	3025118	0	+	0.282828	(0.28,0.32]	chr6	282325	37	INTRON	INTRON	MAP3K4	ENSG00000085511.20	ENST00000366919.6:ENST00000392142.9:ENST00000542952.5:ENST00000366920.6:ENST00000348824.11:ENST00000544041.5:ENST00000490904.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	76	2	2.18212	2.2207549999999996	2.25939	0.021772	0.010265700000000001	0.11491	0.089002
chr19	19905543	19905642	7037042	0	+	0.333333	(0.32,0.35]	chr19	701613	41	INTRON	INTRON	ZNF93	ENSG00000184635.16	ENST00000592613.1:ENST00000591366.5:ENST00000343769.6:ENST00000588146.1:ENST00000586021.5:ENST00000592245.1:ENST00000592160.5:ENST00000589903.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	60	2	2.01768	2.2206	2.42352	0.0361337	0.0122807	0.152563	0.091087
chr1	45520525	45520622	439734	0	-	0.556701	(0.515,0.57]	chr1	53271	11	INTRON	INTRON	PRDX1	ENSG00000117450.15	ENST00000676549.1:ENST00000424390.2:ENST00000447184.6:ENST00000262746.5:ENST00000319248.13:ENST00000372079.1	protein_coding	protein_coding	protein_coding	protein_coding	8	84	2	1.89462	2.220585	2.54655	0.0139002	8.595e-4	0.10247	0.0267428
chr10	68336499	68336598	4440803	0	+	0.363636	(0.35,0.378]	chr10	409480	39	INTRON	INTRON	HNRNPH3	ENSG00000096746.18	ENST00000469172.5:ENST00000461310.5:ENST00000265866.12:ENST00000480987.5:ENST00000486854.5:ENST00000467249.1:ENST00000354695.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	57	2	1.44934	2.220535	2.99173	0.0658369	0.00713365	0.181518	0.0756118
chr15	66395976	66396075	6049326	0	+	0.424242	(0.408,0.44]	chr15	576031	82	INTRON	INTRON	MAP2K1	ENSG00000169032.11	ENST00000425818.2:ENST00000689951.1:ENST00000685763.1:ENST00000307102.10:ENST00000691576.1:ENST00000686347.1:ENST00000691077.1:ENST00000687191.1:ENST00000691937.1:ENST00000692487.1:ENST00000685172.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	51	2	2.07919	2.22052	2.36185	0.0291499	0.0133164	0.14147	0.094512
chr3	191436191	191436291	1590289	0	+	0.33	(0.32,0.35]	chr3	164637	102	INTRON	INTRON	ENSG00000223812	ENSG00000223812.8	ENST00000657540.1:ENST00000439804.6:ENST00000663647.1:ENST00000668751.1:ENST00000666632.1:ENST00000664732.1:ENST00000662007.1:ENST00000641158.1:ENST00000664994.1:ENST00000669884.1:ENST00000642133.1:ENST00000656380.1:ENST00000641055.1:ENST00000662578.1:ENST00000661668.1:ENST00000658347.1:ENST00000661029.1:ENST00000651548.2:ENST00000669360.1:ENST00000653490.1:ENST00000656942.1:ENST00000666456.1:ENST00000668276.1:ENST00000671595.1:ENST00000660290.1	lncRNA	lncRNA	lncRNA	lncRNA	4	58	2	2.1362	2.2204800000000002	2.30476	0.0291083	0.0151817	0.128029	0.108535
chr9	135951786	135951886	4372473	0	-	0.2	[0,0.28]	chr9	402541	35	INTRON	INTRON	UBAC1	ENSG00000130560.9	ENST00000371756.4:ENST00000478485.1:ENST00000486258.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	17	246	2	1.61429	2.2204550000000003	2.82662	0.00879433	7.50132e-4	0.084878	0.0251179
chr1	204553355	204553454	297802	0	+	0.454545	(0.44,0.476]	chr1	34331	38	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	MDM4	ENSG00000198625.14	ENST00000367183.7:ENST00000391947.6:ENST00000454264.6:ENST00000612738.4:ENST00000614459.4:ENST00000616250.4:ENST00000367182.8:ENST00000463049.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	18	201	2	1.90365	2.220405	2.53716	0.00244122	1.46183e-4	0.0445752	0.0105179
chr2	26787683	26787782	715764	0	+	0.393939	(0.378,0.408]	chr2	82664	10	INTRON	INTRON	CENPA	ENSG00000115163.15	ENST00000475662.5:ENST00000472719.5:ENST00000335756.9:ENST00000233505.12:ENST00000419525.5:ENST00000460030.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	62	2	2.04622	2.2203299999999997	2.39444	0.0149927	0.0122858	0.107704	0.091087
chr4	139064332	139064430	2246205	0	-	0.397959	(0.378,0.408]	chr4	219542	19	INTRON	INTRON	ELF2	ENSG00000109381.21	ENST00000394235.6:ENST00000686138.1:ENST00000379550.5:ENST00000358635.7:ENST00000379549.7:ENST00000510408.5:ENST00000512627.1:ENST00000514577.5:ENST00000504314.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	62	2	2.04622	2.2203299999999997	2.39444	0.0149927	0.0122858	0.107704	0.091087
chr6	31836676	31836735	2843852	0	+	0.576271	(0.57,1]	chr6	267913	2	SS5_PROX	SS5_PROX:INTRON	SNHG32	ENSG00000204387.14	ENST00000375640.7:ENST00000375641.6:ENST00000375635.6:ENST00000375638.7:ENST00000648677.1:ENST00000375642.6:ENST00000614363.4:ENST00000395789.5:ENST00000375633.5	lncRNA	lncRNA	lncRNA	lncRNA	10	56	2	1.96068	2.2203049999999998	2.47993	0.007207	0.0019494	0.0756278	0.0400465
chr19	48617980	48618076	7199078	0	-	0.5625	(0.515,0.57]	chr19	729806	2	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPL18	ENSG00000063177.13	ENST00000552347.5:ENST00000547897.5:ENST00000551749.5:ENST00000552588.5:ENST00000549920.6:ENST00000550645.5:ENST00000547892.1:ENST00000549370.5:ENST00000549273.5:ENST00000550973.5:ENST00000552705.5:ENST00000552851.1:ENST00000550671.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:non_stop_decay:nonsense_mediated_decay	5	53	2	1.67758	2.22029	2.763	0.0471728	0.00257143	0.168737	0.045134
chr4	109720352	109720451	2225359	0	-	0.353535	(0.35,0.378]	chr4	217900	12	INTRON	INTRON	PLA2G12A	ENSG00000123739.11	ENST00000243501.10:ENST00000502283.1:ENST00000507961.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	66	2	1.99351	2.22026	2.44701	0.020841	0.00900997	0.111648	0.0851009
chr6	37835008	37835108	2857185	0	+	0.31	(0.28,0.32]	chr6	270225	146	INTRON	INTRON	ZFAND3	ENSG00000156639.12	ENST00000287218.9:ENST00000373391.6:ENST00000474522.5	protein_coding	protein_coding	protein_coding	protein_coding	6	87	2	1.93579	2.220205	2.50462	0.0139701	0.0102735	0.10247	0.0850389
chr7	77607701	77607801	3342734	0	+	0.31	(0.28,0.32]	chr7	311375	4	SS5_PROX	SS5_PROX:INTRON	PTPN12	ENSG00000127947.16	ENST00000248594.11:ENST00000415482.6:ENST00000435495.6:ENST00000522115.6:ENST00000447995.2:ENST00000464313.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	65	2	1.76061	2.22018	2.67975	0.0253826	0.0252505	0.133676	0.12011
chr9	130076462	130076562	4211181	0	+	0.41	(0.408,0.44]	chr9	386002	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	GPR107	ENSG00000148358.20	ENST00000372406.5:ENST00000372410.7:ENST00000347136.11:ENST00000493417.5:ENST00000610997.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	92	2	2.17577	2.220085	2.2644	0.00768371	0.00269594	0.0753803	0.0479115
chr2	96636499	96636579	1181182	0	-	0.3875	(0.378,0.408]	chr2	126527	2	SS5_PROX	SS5_PROX:INTRON	KANSL3	ENSG00000114982.19	ENST00000354204.10:ENST00000431828.6:ENST00000487070.5:ENST00000420155.5:ENST00000670907.1:ENST00000666923.1:ENST00000597150.5:ENST00000444759.5:ENST00000452268.5:ENST00000425656.5:ENST00000448075.1:ENST00000451819.5:ENST00000416138.1:ENST00000418735.1:ENST00000475820.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	79	2	1.92269	2.22001	2.51733	0.00836891	0.00808319	0.0822143	0.0766625
chr6	52271602	52271701	3105772	0	-	0.353535	(0.35,0.378]	chr6	290773	20	INTRON	INTRON	MCM3	ENSG00000112118.20	ENST00000616552.4:ENST00000229854.12:ENST00000596288.7:ENST00000419835.8:ENST00000421471.1	protein_coding	protein_coding	protein_coding	protein_coding	5	65	2	2.11531	2.219975	2.32464	0.0159285	0.0119629	0.101453	0.0962115
chr2	197853306	197853406	969589	0	+	0.41	(0.408,0.44]	chr2	104858	426	INTRON	INTRON	PLCL1	ENSG00000115896.16	ENST00000428675.6:ENST00000435320.1:ENST00000487695.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	37	2	2.07919	2.2199600000000004	2.36073	0.0481658	0.0291499	0.153019	0.14147
chr7	128306922	128307021	3634872	0	-	0.414141	(0.408,0.44]	chr7	337817	94	UTR3	UTR3:EXON_MRNA	RBM28	ENSG00000106344.8	ENST00000223073.6	protein_coding	protein_coding	protein_coding	protein_coding	3	37	2	2.07919	2.2199600000000004	2.36073	0.0481658	0.0291499	0.153019	0.14147
chr9	33994281	33994380	4245294	0	-	0.323232	(0.32,0.35]	chr9	390463	48	INTRON	INTRON	UBAP2	ENSG00000137073.24	ENST00000379238.7:ENST00000683659.1:ENST00000682239.1:ENST00000683140.1:ENST00000682209.1:ENST00000681980.1:ENST00000360802.6:ENST00000683252.1:ENST00000684158.1:ENST00000682914.1:ENST00000683717.1:ENST00000379239.9:ENST00000683084.1:ENST00000684754.1:ENST00000629575.2:ENST00000684298.1:ENST00000412543.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	97	2	2.00036	2.2199600000000004	2.43956	0.012813	0.00352597	0.0926667	0.0546236
chr8	123338321	123338418	4042031	0	-	0.371134	(0.35,0.378]	chr8	368680	1	INTRON	INTRON	ATAD2	ENSG00000156802.13	ENST00000287394.10:ENST00000517666.5:ENST00000521903.5:ENST00000519124.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	110	2	1.72813	2.21994	2.71175	0.0132675	0.00138349	0.100167	0.0338784
chr20	63196116	63196215	7362578	0	-	0.242424	[0,0.28]	chr20	751220	8	UTR3	UTR3:EXON_MRNA	YTHDF1	ENSG00000149658.18	ENST00000370339.8	protein_coding	protein_coding	protein_coding	protein_coding	15	255	2	2.21482	2.219905	2.22499	0.00286968	0.00126861	0.0474836	0.0330485
chr20	43684176	43684275	7276229	0	+	0.383838	(0.378,0.408]	chr20	739735	9	INTRON	INTRON	MYBL2	ENSG00000101057.16	ENST00000396863.8:ENST00000217026.5	protein_coding	protein_coding	protein_coding	protein_coding	4	46	2	1.59317	2.2199	2.84663	0.0603812	0.0133954	0.19151	0.0946278
chr7	56058779	56058856	3319103	0	+	0.402597	(0.378,0.408]	chr7	308503	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	CCT6A	ENSG00000146731.11	ENST00000335503.3:ENST00000275603.9:ENST00000482776.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	46	2	1.59317	2.2199	2.84663	0.0603812	0.0133954	0.19151	0.0946278
chr16	22500178	22500277	6322607	0	+	0.414141	(0.408,0.44]	chr16	605439	80	INTRON	INTRON	NPIPB5	ENSG00000243716.11	ENST00000415654.5:ENST00000415833.6:ENST00000546168.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	71	2	1.55035	2.21974	2.88913	0.0455214	0.00185044	0.164236	0.0388609
chr12	110287357	110287456	5226159	0	+	0.323232	(0.32,0.35]	chr12	495234	42	INTRON	INTRON	ATP2A2	ENSG00000174437.18	ENST00000552636.2:ENST00000308664.10:ENST00000539276.7:ENST00000377685.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	85	2	1.40348	2.219725	3.03597	0.0299484	0.00832487	0.142135	0.0774402
chr3	39407262	39407342	1401784	0	+	0.4	(0.378,0.408]	chr3	147205	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPSA	ENSG00000168028.14	ENST00000477325.1:ENST00000475346.1:ENST00000487876.1:ENST00000301821.11:ENST00000458478.5:ENST00000443003.2:ENST00000444512.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	12	147	2	2.08761	2.219645	2.35168	0.0046563	0.00159194	0.0629753	0.0364566
chr4	20731080	20731179	1927786	0	+	0.414141	(0.408,0.44]	chr4	193897	39	UTR3	UTR3:EXON_MRNA:INTRON	PACRGL	ENSG00000163138.19	ENST00000471979.6:ENST00000503585.6:ENST00000506702.5:ENST00000507634.5:ENST00000467997.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	37	2	1.85305	2.219645	2.58624	0.0543543	0.0273686	0.182243	0.123904
chr5	87392278	87392376	2668706	0	-	0.428571	(0.408,0.44]	chr5	252554	9	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	CCNH	ENSG00000134480.16	ENST00000645953.1:ENST00000646883.1:ENST00000505587.5	protein_coding	retained_intron	protein_coding	retained_intron:nonsense_mediated_decay	3	37	2	1.85305	2.219645	2.58624	0.0543543	0.0273686	0.182243	0.123904
chr16	88966166	88966266	6541189	0	-	0.59	(0.57,1]	chr16	634108	85	INTRON	INTRON	CBFA2T3	ENSG00000129993.15	ENST00000268679.9:ENST00000563640.1	protein_coding	protein_coding	protein_coding	protein_coding	7	40	2	1.50772	2.2196100000000003	2.9315	0.0388955	9.1984e-4	0.16071	0.0278396
chr21	32756313	32756409	7440317	0	-	0.416667	(0.408,0.44]	chr21	759260	11	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	PAXBP1	ENSG00000159086.15	ENST00000331923.9:ENST00000466846.5:ENST00000443785.5:ENST00000290178.4:ENST00000472588.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	17	187	2	1.56519	2.219605	2.87402	0.0114991	2.9321e-5	0.0889104	0.00430415
chr17	21005671	21005761	6742777	0	-	0.566667	(0.515,0.57]	chr17	662010	3	INTRON	INTRON	USP22	ENSG00000124422.12	ENST00000261497.9:ENST00000537526.6:ENST00000455117.6:ENST00000579645.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	51	2	1.8661	2.21954	2.57298	0.0274846	0.00506495	0.123904	0.0646039
chr13	110911771	110911871	5650619	0	-	0.34	(0.32,0.35]	chr13	538397	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	ANKRD10	ENSG00000088448.14	ENST00000267339.6:ENST00000310847.8:ENST00000465753.1:ENST00000494859.5:ENST00000460846.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	120	2	2.16099	2.21945	2.27791	0.0127227	0.00121437	0.0926667	0.032255
chr2	71384663	71384762	807558	0	+	0.30303	(0.28,0.32]	chr2	90214	34	INTRON	INTRON	ZNF638	ENSG00000075292.19	ENST00000410075.5:ENST00000409544.5:ENST00000264447.9:ENST00000491843.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	123	2	2.12129	2.219435	2.31758	0.00696605	0.00445104	0.0754576	0.0592169
chr19	57914446	57914544	7216950	0	-	0.346939	(0.32,0.35]	chr19	733173	19	INTRON	INTRON	ZNF417	ENSG00000173480.11	ENST00000312026.6:ENST00000595559.1:ENST00000597515.5:ENST00000598526.5:ENST00000598629.5:ENST00000599251.1	protein_coding	protein_coding	protein_coding	protein_coding	6	66	2	1.54135	2.2193899999999998	2.89743	0.0353776	0.0127608	0.150752	0.0926667
chr3	33847587	33847687	1394898	0	+	0.33	(0.32,0.35]	chr3	146115	16	INTRON	INTRON	PDCD6IP	ENSG00000170248.15	ENST00000457054.6:ENST00000648706.1:ENST00000307296.8:ENST00000465122.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	66	2	1.54135	2.2193899999999998	2.89743	0.0353776	0.0127608	0.150752	0.0926667
chrX	68515632	68515730	7673940	0	+	0.418367	(0.408,0.44]	chrX	785419	4	INTRON	INTRON	YIPF6	ENSG00000181704.12	ENST00000451537.5:ENST00000374622.3:ENST00000374643.7:ENST00000462683.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	69	2	2.12303	2.21934	2.31565	0.0154718	0.00586883	0.100909	0.0690758
chr2	74177316	74177415	1157115	0	-	0.393939	(0.378,0.408]	chr2	123720	42	INTRON	INTRON	MOB1A	ENSG00000114978.18	ENST00000396049.5:ENST00000497054.5:ENST00000495286.5:ENST00000463975.1:ENST00000488006.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	10	112	2	1.40915	2.2193199999999997	3.02949	0.0372808	1.73068e-4	0.139807	0.0114086
chr1	211973573	211973672	631754	0	-	0.262626	[0,0.28]	chr1	74710	45	INTRON	INTRON	INTS7	ENSG00000143493.13	ENST00000469606.5:ENST00000366994.8:ENST00000366993.7:ENST00000366992.7:ENST00000440600.6:ENST00000475798.5:ENST00000461212.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	78	2	1.84147	2.219265	2.59706	0.0610416	0.00894925	0.193277	0.0799922
chr1	153876227	153876327	557298	0	-	0.31	(0.28,0.32]	chr1	65983	475	INTRON	INTRON	GATAD2B	ENSG00000143614.10	ENST00000368655.5:ENST00000634544.1:ENST00000634408.1:ENST00000634401.1:ENST00000634791.1:ENST00000636014.1:ENST00000637331.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	63	2	2.05458	2.219245	2.38391	0.0381508	0.0122525	0.141764	0.0969406
chr15	27132985	27133085	5983773	0	+	0.29	(0.28,0.32]	chr15	569164	1058	INTRON	INTRON	GABRG3	ENSG00000182256.13	ENST00000615808.5:ENST00000555083.5	protein_coding	protein_coding	protein_coding	protein_coding	4	63	2	2.05458	2.219245	2.38391	0.0381508	0.0122525	0.141764	0.0969406
chr3	6608441	6608541	1357328	0	+	0.4	(0.378,0.408]	chr3	142522	240	INTRON	INTRON	ENSG00000189229	ENSG00000189229.12	ENST00000433639.1:ENST00000655754.1:ENST00000658468.1:ENST00000669512.1:ENST00000667028.1:ENST00000655541.1:ENST00000668643.1:ENST00000671568.1:ENST00000671036.1:ENST00000669798.1:ENST00000655753.1:ENST00000655856.1:ENST00000658398.1:ENST00000661518.1:ENST00000661279.1:ENST00000655495.1:ENST00000663041.1:ENST00000659827.1:ENST00000667716.1:ENST00000668416.1:ENST00000658133.1:ENST00000342990.4:ENST00000660054.1:ENST00000671370.1	lncRNA	lncRNA	lncRNA	lncRNA	11	134	2	2.16565	2.219245	2.27284	0.00255084	0.00173415	0.0449097	0.03851
chr7	30604516	30604611	3301532	0	+	0.242105	[0,0.28]	chr7	306541	11	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	GARS1	ENSG00000106105.15	ENST00000675051.1:ENST00000470392.2:ENST00000674643.1:ENST00000675529.1:ENST00000674807.1:ENST00000675810.1:ENST00000676088.1:ENST00000674815.1:ENST00000676403.1:ENST00000485784.2:ENST00000676210.1:ENST00000478124.6:ENST00000454308.6:ENST00000389266.8:ENST00000675693.1:ENST00000676259.1:ENST00000675651.1:ENST00000674616.1:ENST00000674737.1:ENST00000675859.1:ENST00000676140.1:ENST00000674969.1:ENST00000676164.1:ENST00000675886.1:ENST00000444666.6:ENST00000675587.1:ENST00000674851.1:ENST00000675863.1:ENST00000674734.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	100	2	1.53862	2.21922	2.89982	0.0254957	0.0158893	0.133676	0.101453
chr4	68314000	68314098	2154507	0	-	0.295918	(0.28,0.32]	chr4	212203	38	UTR3	UTR3:EXON_MRNA	YTHDC1	ENSG00000083896.13	ENST00000344157.9:ENST00000355665.7:ENST00000579690.5	protein_coding	protein_coding	protein_coding	protein_coding	4	56	2	1.81152	2.21919	2.62686	0.034446	0.0289217	0.147767	0.1274
chr5	32423294	32423393	2599114	0	-	0.30303	(0.28,0.32]	chr5	246966	28	INTRON	INTRON	ZFR	ENSG00000056097.16	ENST00000265069.13:ENST00000505366.1:ENST00000505204.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	123	2	1.69646	2.219105	2.74175	0.0104499	0.00457205	0.0903187	0.0595107
chr18	2724208	2724303	6865574	0	+	0.315789	(0.28,0.32]	chr18	680049	12	INTRON	INTRON	SMCHD1	ENSG00000101596.17	ENST00000320876.11:ENST00000688342.1:ENST00000693213.1:ENST00000577880.5:ENST00000584897.5:ENST00000583441.2:ENST00000690757.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	98	2	2.03307	2.218825	2.40458	0.0141047	0.0062039	0.0959618	0.0716199
chr3	177178699	177178799	1872261	0	-	0.37	(0.35,0.378]	chr3	187438	74	INTRON	INTRON	TBL1XR1	ENSG00000177565.18	ENST00000457928.7:ENST00000430069.5:ENST00000673974.1:ENST00000352800.10:ENST00000422442.6:ENST00000428970.5:ENST00000424913.5:ENST00000437738.5:ENST00000431421.5:ENST00000635794.1:ENST00000630796.2:ENST00000450267.5:ENST00000630833.2:ENST00000431674.5:ENST00000422066.5:ENST00000443315.5:ENST00000627825.2:ENST00000427349.5:ENST00000413084.5:ENST00000637137.1:ENST00000491623.2:ENST00000637544.1:ENST00000636187.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	91	2	1.60653	2.218775	2.83102	0.0427748	5.35542e-4	0.148082	0.0209215
chr3	183730246	183730346	1580619	0	+	0.57	(0.515,0.57]	chr3	163056	10	INTRON	INTRON	YEATS2	ENSG00000163872.16	ENST00000305135.10	protein_coding	protein_coding	protein_coding	protein_coding	4	38	2	1.7492	2.2187650000000003	2.68833	0.0382504	0.0184931	0.15832	0.108861
chr11	34057668	34057768	4767710	0	+	0.3	(0.28,0.32]	chr11	440953	7	INTRON	INTRON	CAPRIN1	ENSG00000135387.21	ENST00000341394.9:ENST00000528856.5:ENST00000389645.7:ENST00000534042.5:ENST00000534825.5:ENST00000532820.5:ENST00000530820.5:ENST00000529307.1:ENST00000526494.5:ENST00000532755.5:ENST00000533641.5:ENST00000530008.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	47	2	1.76293	2.21873	2.67453	0.0766478	0.021289	0.196164	0.123318
chr4	75797439	75797537	1975256	0	+	0.316327	(0.28,0.32]	chr4	198010	17	INTRON	INTRON	USO1	ENSG00000138768.15	ENST00000514213.7:ENST00000264904.8	protein_coding	protein_coding	protein_coding	protein_coding	3	47	2	1.76293	2.21873	2.67453	0.0766478	0.021289	0.196164	0.123318
chr8	23225633	23225731	3714554	0	+	0.510204	(0.476,0.515]	chr8	345064	1	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	TNFRSF10A-DT	ENSG00000246582.3	ENST00000517774.1:ENST00000500853.1:ENST00000670072.1:ENST00000522600.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	6	60	2	1.55865	2.2187200000000002	2.87879	0.034348	0.00999149	0.135807	0.0879541
chr7	107076405	107076504	3377484	0	+	0.363636	(0.35,0.378]	chr7	316248	57	INTRON	INTRON	PRKAR2B	ENSG00000005249.13	ENST00000265717.5:ENST00000393613.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	66	2	2.04224	2.218715	2.39519	0.0363073	0.00401951	0.138959	0.0578189
chr6	134968737	134968837	3224584	0	-	0.34	(0.32,0.35]	chr6	299767	1	SS5_PROX	SS5_PROX:INTRON	HBS1L	ENSG00000112339.15	ENST00000367837.10:ENST00000527578.5:ENST00000527005.5:ENST00000415177.6:ENST00000367826.6:ENST00000533274.5:ENST00000526100.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	70	2	2.1362	2.2186500000000002	2.3011	0.0291083	0.00617969	0.128029	0.0713552
chr8	26333285	26333385	3716515	0	+	0.36	(0.35,0.378]	chr8	345377	4	SS3_PROX	SS3_PROX:INTRON	PPP2R2A	ENSG00000221914.11	ENST00000380737.8:ENST00000520329.5:ENST00000518254.5:ENST00000524169.5:ENST00000518397.5:ENST00000522535.5:ENST00000665949.1:ENST00000522150.5:ENST00000523473.5:ENST00000521095.5:ENST00000660435.1:ENST00000523925.5:ENST00000524099.5:ENST00000315985.7:ENST00000519636.5:ENST00000522482.5:ENST00000521557.5:ENST00000519439.5:ENST00000521484.5:ENST00000523964.5:ENST00000667651.1:ENST00000657943.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	78	2	2.04224	2.21854	2.39484	0.0363073	0.00186176	0.138959	0.039946
chr1	23285094	23285194	399147	0	-	0.43	(0.408,0.44]	chr1	47822	39	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	LINC01355	ENSG00000261326.4	ENST00000655082.1:ENST00000647667.1:ENST00000566551.1:ENST00000660265.1:ENST00000666981.1:ENST00000604481.1	lncRNA	lncRNA	lncRNA	lncRNA	9	105	2	1.85142	2.218535	2.58565	0.0127811	6.66092e-4	0.0926667	0.0233804
chr7	149024792	149024890	3671012	0	-	0.428571	(0.408,0.44]	chr7	340694	33	INTRON	INTRON	PDIA4	ENSG00000155660.11	ENST00000652332.1:ENST00000286091.9:ENST00000413966.1	protein_coding	protein_coding	protein_coding	protein_coding	7	62	2	1.38001	2.21853	3.05705	0.0444754	0.00658331	0.162826	0.0701901
chr1	51460943	51461016	453766	0	-	0.287671	(0.28,0.32]	chr1	54405	1	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	EPS15	ENSG00000085832.17	ENST00000371733.8:ENST00000371730.6:ENST00000371727.5:ENST00000464478.5:ENST00000471391.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	105	2	2.17818	2.218495	2.25881	0.009974	0.00555379	0.0842795	0.0675078
chr1	156118760	156118860	230455	0	+	0.43	(0.408,0.44]	chr1	27156	31	INTRON	INTRON	LMNA	ENSG00000160789.24	ENST00000502751.5:ENST00000368301.6:ENST00000676385.2:ENST00000675939.1:ENST00000675667.1:ENST00000675989.1:ENST00000676283.1:ENST00000674720.1:ENST00000496738.6:ENST00000674518.1:ENST00000676208.1:ENST00000674600.1:ENST00000675874.1:ENST00000676434.1:ENST00000684195.1:ENST00000683032.1:ENST00000682650.1:ENST00000361308.9:ENST00000368300.9:ENST00000675881.1:ENST00000675455.1:ENST00000677389.1:ENST00000470199.2:ENST00000469565.6:ENST00000368299.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	105	2	1.93275	2.218495	2.50424	0.00938746	0.00101099	0.0817766	0.0293364
chr3	38255384	38255484	1399471	0	+	0.25	[0,0.28]	chr3	146767	26	UTR3	UTR3:EXON_MRNA	OXSR1	ENSG00000172939.9	ENST00000311806.8	protein_coding	protein_coding	protein_coding	protein_coding	3	53	2	1.84147	2.2184749999999998	2.59548	0.0610416	0.0346067	0.193277	0.136649
chr6	133969057	133969157	2961916	0	+	0.25	[0,0.28]	chr6	278514	1	SS5_PROX	SS5_PROX:INTRON	TBPL1	ENSG00000028839.10	ENST00000613034.4:ENST00000416965.5:ENST00000457715.1:ENST00000367871.5:ENST00000237264.9:ENST00000367869.1	protein_coding	protein_coding	protein_coding	protein_coding	3	53	2	1.84147	2.2184749999999998	2.59548	0.0610416	0.0346067	0.193277	0.136649
chr17	82118043	82118142	6851472	0	-	0.424242	(0.408,0.44]	chr17	678956	39	INTRON	INTRON	CCDC57	ENSG00000176155.21	ENST00000694881.1:ENST00000389641.9:ENST00000694882.1:ENST00000665763.1:ENST00000578910.2:ENST00000392345.6:ENST00000583593.2:ENST00000419322.6:ENST00000392346.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	46	2	1.69172	2.21845	2.74518	0.0486032	0.0152229	0.153946	0.108535
chr1	20754171	20754271	389527	0	-	0.36	(0.35,0.378]	chr1	46531	39	INTRON	INTRON	HP1BP3	ENSG00000127483.19	ENST00000438032.6:ENST00000312239.10:ENST00000375003.6:ENST00000419948.5	protein_coding	protein_coding	protein_coding	protein_coding	8	100	2	1.63291	2.2184	2.80389	0.0289396	6.14024e-4	0.1274	0.0223951
chr9	41370148	41370248	4125906	0	+	0.52	(0.515,0.57]	chr9	376044	106	INTRON	INTRON	ENSG00000288891	ENSG00000288891.1	ENST00000692789.1:ENST00000686353.1	lncRNA	lncRNA	lncRNA	lncRNA	3	33	2	2.08547	2.2183599999999997	2.35125	0.0436431	0.0289426	0.162255	0.1274
chr20	4013845	4013944	7309391	0	-	0.262626	[0,0.28]	chr20	744300	391	INTRON	INTRON	RNF24	ENSG00000101236.17	ENST00000336095.10:ENST00000358395.11:ENST00000545616.2	protein_coding	protein_coding	protein_coding	protein_coding	5	87	2	2.09841	2.21833	2.33825	0.0195228	0.0151026	0.109483	0.108435
chr11	74237503	74237598	4827194	0	+	0.505263	(0.476,0.515]	chr11	450494	12	INTRON	INTRON	PPME1	ENSG00000214517.10	ENST00000328257.13:ENST00000398427.6:ENST00000543525.3:ENST00000535205.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	51	2	1.73688	2.2182749999999998	2.69967	0.0252731	0.0195838	0.133676	0.109483
chr1	154242929	154243024	227757	0	+	0.315789	(0.28,0.32]	chr1	26277	1	EXON_LNCRNA	EXON_LNCRNA:SS3_PROX:INTRON	UBAP2L	ENSG00000143569.19	ENST00000343815.10:ENST00000271877.11:ENST00000613315.4:ENST00000412596.5:ENST00000368504.5:ENST00000428931.6:ENST00000437652.5:ENST00000361546.6:ENST00000466173.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	58	2	2.1076	2.2181550000000003	2.32871	0.0581621	0.0133585	0.167723	0.100772
chr18	9931111	9931210	6873515	0	+	0.282828	(0.28,0.32]	chr18	680874	58	INTRON	INTRON	VAPA	ENSG00000101558.14	ENST00000400000.7:ENST00000577901.5:ENST00000340541.4:ENST00000585042.5:ENST00000584796.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	64	2	1.51776	2.218135	2.91851	0.0528371	0.0130672	0.178899	0.093385
chr2	53864350	53864444	1119451	0	-	0.308511	(0.28,0.32]	chr2	119849	4	UTR3	UTR3:EXON_MRNA	PSME4	ENSG00000068878.15	ENST00000404125.6:ENST00000389993.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	64	2	1.51776	2.218135	2.91851	0.0528371	0.0130672	0.178899	0.093385
chr19	10118557	10118567	7134177	0	-	0.4	(0.378,0.408]	chr19	719042	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	EIF3G	ENSG00000130811.12	ENST00000253108.9:ENST00000589454.5:ENST00000587146.5:ENST00000588709.5:ENST00000589009.5:ENST00000593066.5:ENST00000593095.5:ENST00000587993.5:ENST00000590940.5:ENST00000587681.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	52	2	2.17608	2.218085	2.26009	0.0218783	0.0188651	0.123836	0.108861
chr17	1359402	1359501	6699193	0	-	0.363636	(0.35,0.378]	chr17	655527	47	INTRON	INTRON	YWHAE	ENSG00000108953.17	ENST00000264335.13:ENST00000466227.6:ENST00000571732.5:ENST00000573026.1:ENST00000496706.1:ENST00000573196.5:ENST00000575977.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	62	2	1.59904	2.218065	2.83709	0.0285976	0.01435	0.139244	0.0966737
chr16	7962839	7962939	6440136	0	-	0.36	(0.35,0.378]	chr16	620339	681	INTRON	INTRON	ENSG00000260289	ENSG00000260289.2	ENST00000670665.1:ENST00000654046.1:ENST00000567103.2	lncRNA	lncRNA	lncRNA	lncRNA	4	54	2	2.09331	2.218045	2.34278	0.0315717	0.0129593	0.13151	0.0991015
chr16	7973631	7973730	6440244	0	-	0.40404	(0.378,0.408]	chr16	620339	789	INTRON	INTRON	ENSG00000260289	ENSG00000260289.2	ENST00000670665.1:ENST00000654046.1:ENST00000567103.2	lncRNA	lncRNA	lncRNA	lncRNA	5	64	2	2.13797	2.217975	2.29798	0.0147606	0.0124882	0.106702	0.0923444
chr17	40167270	40167365	6609401	0	+	0.273684	[0,0.28]	chr17	643699	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CASC3	ENSG00000108349.17	ENST00000264645.12:ENST00000577605.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	65	2	1.99345	2.2179349999999998	2.44242	0.0491024	0.0211881	0.155269	0.123133
chr3	179327743	179327824	1566804	0	+	0.296296	(0.28,0.32]	chr3	162027	1	UTR5	UTR5:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ZNF639	ENSG00000121864.10	ENST00000496856.6:ENST00000491818.5:ENST00000481587.5:ENST00000326361.7:ENST00000466264.5:ENST00000484866.5:ENST00000494234.5	protein_coding	protein_coding	protein_coding	protein_coding	4	63	2	1.96376	2.21793	2.4721	0.0480066	0.00906617	0.153019	0.0854289
chr2	134945586	134945686	872511	0	+	0.38	(0.378,0.408]	chr2	97684	4	SS3_PROX	SS3_PROX:INTRON	CCNT2	ENSG00000082258.13	ENST00000419781.5:ENST00000446247.5:ENST00000264157.10:ENST00000452839.5:ENST00000295238.10:ENST00000417175.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	71	2	2.0848	2.217915	2.35103	0.014158	0.00697927	0.0959618	0.0754576
chr21	44041715	44041814	7415328	0	+	0.393939	(0.378,0.408]	chr21	755795	34	INTRON	INTRON	TRAPPC10	ENSG00000160218.13	ENST00000291574.9:ENST00000380221.7:ENST00000422875.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	39	2	1.88729	2.21789	2.54849	0.0532327	0.0273196	0.162538	0.136494
chr5	40796368	40796468	2611150	0	-	0.39	(0.378,0.408]	chr5	248269	63	INTRON	INTRON	PRKAA1	ENSG00000132356.12	ENST00000397128.7:ENST00000354209.7:ENST00000506652.5:ENST00000509874.5:ENST00000296800.4:ENST00000511248.1:ENST00000397006.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	39	2	1.88729	2.21789	2.54849	0.0532327	0.0273196	0.162538	0.136494
chr1	207727607	207727707	304788	0	+	0.34	(0.32,0.35]	chr1	35076	25	INTRON	INTRON	CR1L	ENSG00000197721.17	ENST00000294997.10	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	8	106	2	1.8916	2.21784	2.54408	0.00936694	0.00659077	0.0817766	0.0737338
chr10	21719646	21719746	4406289	0	+	0.36	(0.35,0.378]	chr10	406555	53	INTRON	INTRON	MLLT10	ENSG00000078403.17	ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000651298.1:ENST00000377059.7:ENST00000651382.1:ENST00000438473.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	55	2	1.54563	2.21783	2.89003	0.046845	0.0122391	0.167716	0.0910127
chr5	104291475	104291575	2443330	0	+	0.31	(0.28,0.32]	chr5	234410	1862	INTRON	INTRON	LINC02163	ENSG00000251026.2	ENST00000662211.1:ENST00000666145.1	lncRNA	lncRNA	lncRNA	lncRNA	4	63	2	2.09794	2.217825	2.33771	0.0340483	0.0142701	0.134863	0.103838
chr3	183761206	183761306	1580935	0	+	0.52	(0.515,0.57]	chr3	163093	3	SS3_PROX	SS3_PROX:INTRON	YEATS2	ENSG00000163872.16	ENST00000305135.10	protein_coding	protein_coding	protein_coding	protein_coding	6	52	2	1.60369	2.217785	2.83188	0.027865	0.0108207	0.124158	0.0920575
chr15	90268991	90269091	6098446	0	+	0.47	(0.44,0.476]	chr15	580504	22	INTRON	INTRON	NGRN	ENSG00000182768.9	ENST00000331497.3:ENST00000379095.5:ENST00000411845.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	37	2	1.77101	2.21767	2.66433	0.0693975	0.0194358	0.184298	0.119831
chr16	70505933	70506032	6511737	0	-	0.474747	(0.44,0.476]	chr16	630752	45	INTRON	INTRON	COG4	ENSG00000103051.20	ENST00000564415.6:ENST00000323786.10:ENST00000530314.5:ENST00000393612.8:ENST00000674443.1:ENST00000482252.5:ENST00000526700.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	37	2	1.77101	2.21767	2.66433	0.0693975	0.0194358	0.184298	0.119831
chr19	41362287	41362384	7185587	0	-	0.474227	(0.44,0.476]	chr19	726926	7	INTRON	INTRON	B9D2	ENSG00000123810.9	ENST00000243578.8:ENST00000675972.1:ENST00000594416.1:ENST00000601597.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	37	2	1.77101	2.21767	2.66433	0.0693975	0.0194358	0.184298	0.119831
chr21	33905567	33905662	7444938	0	-	0.442105	(0.44,0.476]	chr21	759711	12	INTRON	INTRON	ENSG00000249209:ATP5PO	ENSG00000249209.2:ENSG00000241837.7	ENST00000429238.2:ENST00000290299.7:ENST00000491703.5:ENST00000431254.5:ENST00000652380.1:ENST00000418933.1:ENST00000417181.5:ENST00000429064.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	37	2	1.77101	2.21767	2.66433	0.0693975	0.0194358	0.184298	0.119831
chr7	135506771	135506871	3648928	0	-	0.47	(0.44,0.476]	chr7	339187	680	INTRON	INTRON	CNOT4	ENSG00000080802.20	ENST00000541284.6:ENST00000451834.5:ENST00000423368.6:ENST00000361528.8:ENST00000428680.6:ENST00000315544.6:ENST00000491203.5:ENST00000498534.5:ENST00000465721.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	37	2	1.77101	2.21767	2.66433	0.0693975	0.0194358	0.184298	0.119831
chr1	23163167	23163267	398961	0	-	0.44	(0.408,0.44]	chr1	47812	296	INTRON	INTRON	LUZP1	ENSG00000169641.14	ENST00000302291.8:ENST00000314174.5:ENST00000471849.5	protein_coding	protein_coding	protein_coding	protein_coding	3	38	2	1.94273	2.2176549999999997	2.49258	0.0456237	0.0314608	0.149888	0.144381
chr3	42060608	42060708	1404128	0	+	0.43	(0.408,0.44]	chr3	147497	461	INTRON	INTRON	TRAK1	ENSG00000182606.17	ENST00000487159.5:ENST00000672026.1:ENST00000673621.2	protein_coding	protein_coding	protein_coding	protein_coding	3	38	2	1.94273	2.2176549999999997	2.49258	0.0456237	0.0314608	0.149888	0.144381
chr6	42067818	42067915	2864848	0	+	0.42268	(0.408,0.44]	chr6	270977	15	EXON_MRNA	EXON_MRNA:INTRON	TAF8	ENSG00000137413.17	ENST00000686935.1:ENST00000372982.8:ENST00000456846.6:ENST00000494547.5:ENST00000372977.8:ENST00000688562.1:ENST00000686229.1:ENST00000691805.1:ENST00000687601.1:ENST00000688007.1:ENST00000689833.1:ENST00000687266.1:ENST00000465926.5:ENST00000685500.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	38	2	1.94273	2.2176549999999997	2.49258	0.0456237	0.0314608	0.149888	0.144381
chr13	30463860	30463950	5569919	0	-	0.4	(0.378,0.408]	chr13	532383	3	UTR5	UTR5:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HMGB1	ENSG00000189403.15	ENST00000341423.10:ENST00000405805.5:ENST00000339872.8:ENST00000399489.5:ENST00000399494.5:ENST00000326004.4:ENST00000468384.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	125	2	2.01851	2.21762	2.41673	0.00559022	0.00122932	0.0678837	0.0321361
chr1	180693904	180694004	270215	0	+	0.38	(0.378,0.408]	chr1	31620	111	INTRON	INTRON	XPR1	ENSG00000143324.14	ENST00000367590.9:ENST00000367589.3	protein_coding	protein_coding	protein_coding	protein_coding	3	38	2	1.97143	2.21758	2.46373	0.0398704	0.0382831	0.161534	0.141795
chr16	24785144	24785244	6329774	0	+	0.39	(0.378,0.408]	chr16	605958	63	INTRON	INTRON	TNRC6A	ENSG00000090905.19	ENST00000395799.8:ENST00000315183.11:ENST00000491718.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	38	2	1.97143	2.21758	2.46373	0.0398704	0.0382831	0.161534	0.141795
chr16	81527686	81527785	6405828	0	+	0.383838	(0.378,0.408]	chr16	615031	318	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6	protein_coding	protein_coding	protein_coding	protein_coding	3	38	2	1.97143	2.21758	2.46373	0.0398704	0.0382831	0.161534	0.141795
chr3	177027830	177027928	1870711	0	-	0.295918	(0.28,0.32]	chr3	187282	1	INTRON	INTRON	TBL1XR1	ENSG00000177565.18	ENST00000636864.1:ENST00000457928.7:ENST00000430069.5:ENST00000637659.1:ENST00000673974.1:ENST00000631253.2:ENST00000352800.10:ENST00000422442.6:ENST00000626758.1:ENST00000636348.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	100	2	2.17573	2.2175599999999998	2.25939	0.021772	0.00339266	0.11491	0.0536193
chr7	152386057	152386157	3680794	0	-	0.34	(0.32,0.35]	chr7	341660	270	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000682301.1:ENST00000452749.2:ENST00000680867.1:ENST00000683800.1:ENST00000684278.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	84	2	1.96288	2.21754	2.4722	0.0239991	0.00307237	0.119664	0.0509893
chr13	20074632	20074732	5453619	0	+	0.55	(0.515,0.57]	chr13	522569	64	INTRON	INTRON	ZMYM2	ENSG00000121741.17	ENST00000382874.6:ENST00000610343.5:ENST00000382871.3:ENST00000382883.7:ENST00000382870.7:ENST00000494061.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	51	2	1.75372	2.21752	2.68132	0.0386904	0.00324198	0.14279	0.0524329
chr4	126589700	126589800	2236606	0	-	0.29	(0.28,0.32]	chr4	219023	1242	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	10	138	2	1.97956	2.217515	2.45547	0.00495986	0.00395618	0.0615009	0.057511
chr16	84725389	84725489	6410157	0	+	0.46	(0.44,0.476]	chr16	615272	85	INTRON	INTRON	USP10	ENSG00000103194.16	ENST00000562743.5:ENST00000540269.6:ENST00000563892.5:ENST00000562092.1:ENST00000569511.5:ENST00000219473.12:ENST00000570191.5:ENST00000563048.5:ENST00000562283.5:ENST00000563386.5:ENST00000569038.5:ENST00000570053.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	104	2	2.15136	2.2175149999999997	2.28367	0.0061794	0.00160306	0.0677395	0.0367961
chr19	11004189	11004286	7016010	0	+	0.381443	(0.378,0.408]	chr19	697252	4	INTRON	INTRON	SMARCA4	ENSG00000127616.20	ENST00000644737.1:ENST00000642726.1:ENST00000646484.1:ENST00000643549.1:ENST00000643296.1:ENST00000647230.1:ENST00000642628.1:ENST00000646510.1:ENST00000429416.8:ENST00000344626.10:ENST00000646693.2:ENST00000645460.1:ENST00000541122.6:ENST00000589677.5:ENST00000444061.8:ENST00000590574.6:ENST00000591545.6:ENST00000643995.1:ENST00000644327.1:ENST00000644065.1:ENST00000644963.1:ENST00000643208.1:ENST00000645061.1:ENST00000642350.1:ENST00000644290.1:ENST00000647268.1:ENST00000643857.1:ENST00000644267.1:ENST00000646183.1:ENST00000646746.1:ENST00000643534.1:ENST00000646513.1:ENST00000647011.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	39	2	2.13703	2.217505	2.29798	0.0797592	0.0147606	0.19979	0.106702
chr7	91976155	91976254	3351369	0	+	0.474747	(0.44,0.476]	chr7	312192	18	INTRON	INTRON	AKAP9	ENSG00000127914.19	ENST00000680534.1:ENST00000680513.1:ENST00000680072.1:ENST00000679821.1:ENST00000679554.1:ENST00000356239.8:ENST00000679521.1:ENST00000680181.1:ENST00000681722.1:ENST00000680766.1:ENST00000679448.1:ENST00000681412.1:ENST00000680047.1:ENST00000679474.1:ENST00000680952.1:ENST00000679457.1:ENST00000679722.1:ENST00000680074.1:ENST00000493453.1:ENST00000394564.5:ENST00000674381.2:ENST00000359028.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	63	2	1.57262	2.217465	2.86231	0.0230575	0.012214	0.126603	0.0910127
chr1	31065215	31065315	412895	0	-	0.48	(0.476,0.515]	chr1	49753	2	SS5_PROX	SS5_PROX:INTRON	PUM1	ENSG00000134644.16	ENST00000426105.7:ENST00000373747.7:ENST00000257075.9:ENST00000424085.6:ENST00000525843.5:ENST00000440538.6:ENST00000373741.8:ENST00000373742.6:ENST00000526215.5:ENST00000525948.5:ENST00000480602.1:ENST00000524516.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	104	2	2.06195	2.21745	2.37295	0.00539948	0.00193884	0.064414	0.0409025
chr2	127749643	127749743	1225259	0	-	0.39	(0.378,0.408]	chr2	130486	112	INTRON	INTRON	WDR33	ENSG00000136709.12	ENST00000322313.9:ENST00000436787.5:ENST00000393006.5	protein_coding	protein_coding	protein_coding	protein_coding	15	169	2	1.5743	2.217415	2.86053	0.0131069	6.7208e-5	0.093576	0.00678102
chr6	31755901	31756000	2843654	0	+	0.323232	(0.32,0.35]	chr6	267818	19	INTRON	INTRON	MSH5:MSH5-SAPCD1	ENSG00000204410.16:ENSG00000255152.8	ENST00000375755.8:ENST00000375750.9:ENST00000650702.1:ENST00000493662.6:ENST00000375703.7:ENST00000375740.7:ENST00000423982.6:ENST00000463144.5:ENST00000450148.5:ENST00000468602.5:ENST00000468136.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	13	177	2	2.08423	2.2173749999999997	2.35052	0.00218213	0.00136559	0.0435144	0.0336718
chr4	70928431	70928531	1970766	0	+	0.47	(0.44,0.476]	chr4	197571	255	INTRON	INTRON	MOB1B	ENSG00000173542.9	ENST00000502869.5:ENST00000509041.5:ENST00000309395.7:ENST00000396051.2:ENST00000511449.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	44	2	1.69402	2.2173249999999998	2.74063	0.0456129	0.0176095	0.164236	0.105143
chr12	24942333	24942433	5297845	0	-	0.47	(0.44,0.476]	chr12	503884	394	INTRON	INTRON	BCAT1	ENSG00000060982.15	ENST00000261192.12:ENST00000342945.9:ENST00000539780.5:ENST00000546285.1	protein_coding	protein_coding	protein_coding	protein_coding	5	60	2	1.98938	2.21726	2.44514	0.0198602	0.0087381	0.109608	0.0845538
chr22	19900659	19900758	7555902	0	-	0.50505	(0.476,0.515]	chr22	772518	12	INTRON	INTRON	TXNRD2	ENSG00000184470.21	ENST00000400518.5:ENST00000542719.6:ENST00000494454.5:ENST00000474308.5:ENST00000400525.6:ENST00000400521.7:ENST00000400519.6:ENST00000635155.1:ENST00000491939.6:ENST00000334363.14:ENST00000475995.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	44	2	1.80284	2.21726	2.63168	0.033161	0.0237106	0.145899	0.118716
chr12	122574680	122574780	5241083	0	+	0.38	(0.378,0.408]	chr12	497712	3	SS5_PROX	SS5_PROX:INTRON	KNTC1	ENSG00000184445.12	ENST00000450485.6:ENST00000333479.12	protein_coding	protein_coding	protein_coding	protein_coding	5	62	2	1.82258	2.2172300000000003	2.61188	0.0341279	0.0047055	0.135102	0.0631419
chr2	32178892	32178992	729910	0	+	0.56	(0.515,0.57]	chr2	84166	9	INTRON	INTRON	SLC30A6	ENSG00000152683.14	ENST00000357055.7:ENST00000435660.5:ENST00000282587.9:ENST00000449777.5:ENST00000454324.5:ENST00000379343.6:ENST00000440718.5:ENST00000406369.2:ENST00000457724.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	51	2	2.21273	2.2171950000000002	2.22166	0.0196151	0.00735516	0.109486	0.0765982
chr12	110534541	110534641	5410000	0	-	0.48	(0.476,0.515]	chr12	516604	14	UTR3	UTR3:EXON_MRNA	PPTC7	ENSG00000196850.6	ENST00000354300.5	protein_coding	protein_coding	protein_coding	protein_coding	7	83	2	1.87147	2.21719	2.56291	0.0157856	0.00222582	0.109464	0.0421176
chr22	15787457	15787553	7472917	0	+	0.322917	(0.32,0.35]	chr22	761926	4	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	DUXAP8	ENSG00000206195.11	ENST00000413768.5:ENST00000437781.5:ENST00000383038.7:ENST00000661115.1:ENST00000603308.2:ENST00000447898.5	lncRNA	lncRNA	lncRNA	lncRNA	5	70	2	1.8903	2.21719	2.54408	0.0298043	0.00659077	0.129138	0.0737338
chr16	23887875	23887975	6324279	0	+	0.6	(0.57,1]	chr16	605697	187	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000645517.1:ENST00000498739.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	70	2	1.79048	2.21718	2.64388	0.0064628	1.46112e-4	0.0699952	0.0105174
chr5	10398722	10398819	2318109	0	+	0.257732	[0,0.28]	chr5	224668	10	INTRON	INTRON	MARCHF6	ENSG00000145495.16	ENST00000274140.10:ENST00000449913.6:ENST00000511802.5:ENST00000503788.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	72	2	2.02265	2.2171700000000003	2.41169	0.0449017	0.0122872	0.149888	0.0970106
chr6	89770068	89770167	3161525	0	-	0.484848	(0.476,0.515]	chr6	294808	72	INTRON	INTRON	MDN1	ENSG00000112159.12	ENST00000369393.8:ENST00000629399.2:ENST00000439638.1	protein_coding	protein_coding	protein_coding	protein_coding	7	76	2	1.52755	2.217115	2.90668	0.0355377	0.00164243	0.151404	0.0369207
chr16	84732367	84732467	6410227	0	+	0.27	[0,0.28]	chr16	615274	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	USP10	ENSG00000103194.16	ENST00000562743.5:ENST00000540269.6:ENST00000563892.5:ENST00000562092.1:ENST00000569511.5:ENST00000219473.12:ENST00000570191.5:ENST00000563048.5:ENST00000562283.5:ENST00000563386.5:ENST00000569038.5:ENST00000570053.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	122	2	1.60899	2.2170699999999997	2.82515	0.0503341	8.72498e-4	0.156383	0.0268436
chr5	69173750	69173850	2380045	0	+	0.49	(0.476,0.515]	chr5	229164	1	SS3_PROX	SS3_PROX:INTRON	CCNB1	ENSG00000134057.15	ENST00000506572.5:ENST00000256442.10:ENST00000508407.5:ENST00000505500.5:ENST00000503507.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	17	192	2	2.06411	2.217055	2.37	0.00261931	1.47087e-4	0.0455733	0.0105341
chr11	9173889	9173986	4908142	0	-	0.505155	(0.476,0.515]	chr11	460057	33	EXON_MRNA	EXON_MRNA:INTRON	DENND5A	ENSG00000184014.9	ENST00000328194.8:ENST00000681203.1:ENST00000530780.2:ENST00000680358.1:ENST00000679999.1:ENST00000679458.1:ENST00000680470.1:ENST00000680599.1:ENST00000680554.1:ENST00000679745.1:ENST00000680252.1:ENST00000681425.1:ENST00000681158.1:ENST00000679460.1:ENST00000679568.1:ENST00000679446.1:ENST00000680294.1:ENST00000680742.1:ENST00000680885.1:ENST00000680576.1:ENST00000530044.5:ENST00000526707.5:ENST00000681173.1:ENST00000527896.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	59	2	2.06898	2.21699	2.365	0.0137491	0.0128901	0.10247	0.0926667
chr16	3676997	3677097	6434060	0	-	0.48	(0.476,0.515]	chr16	619331	1	SS5_PROX	SS5_PROX:INTRON	TRAP1	ENSG00000126602.11	ENST00000246957.10:ENST00000538171.5:ENST00000575671.5:ENST00000573872.5:ENST00000576335.5:ENST00000574175.1:ENST00000575854.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	18	202	2	1.98686	2.21699	2.44712	0.00186222	1.71735e-4	0.0390476	0.0113605
chr14	30958915	30959013	5857197	0	-	0.387755	(0.378,0.408]	chr14	556504	23	INTRON	INTRON	STRN3	ENSG00000196792.12	ENST00000355683.9:ENST00000357479.10:ENST00000555358.5:ENST00000555152.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	87	2	1.91661	2.21697	2.51733	0.00808319	0.00588056	0.0766625	0.0691502
chr16	23896051	23896151	6324361	0	+	0.35	(0.32,0.35]	chr16	605701	23	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000498739.1	protein_coding	protein_coding	protein_coding	protein_coding	12	154	2	1.82047	2.21697	2.61347	0.00567197	0.00110867	0.0678837	0.0306328
chr12	50452760	50452859	5136865	0	+	0.383838	(0.378,0.408]	chr12	484418	108	INTRON	INTRON	LARP4	ENSG00000161813.23	ENST00000293618.12:ENST00000429001.7:ENST00000398473.7:ENST00000522085.5:ENST00000518444.5:ENST00000518561.5:ENST00000347328.9:ENST00000520064.2:ENST00000521120.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	62	2	2.16303	2.216915	2.2708	0.0252473	0.00646593	0.12011	0.073179
chr2	55015517	55015617	1121057	0	-	0.33	(0.32,0.35]	chr2	120149	11	INTRON	INTRON	RTN4	ENSG00000115310.19	ENST00000404909.5:ENST00000394611.6:ENST00000317610.11:ENST00000357732.8:ENST00000337526.11:ENST00000357376.7:ENST00000405240.5:ENST00000438462.1	protein_coding	protein_coding	protein_coding	protein_coding	9	106	2	1.83527	2.21691	2.59855	0.00682041	0.00679363	0.0744247	0.0712518
chr19	3550783	3550883	7117791	0	-	0.52	(0.515,0.57]	chr19	715773	4	SS5_PROX	SS5_PROX:INTRON	MFSD12	ENSG00000161091.14	ENST00000355415.7:ENST00000588918.5:ENST00000389395.7:ENST00000589995.1:ENST00000585814.1:ENST00000592652.1:ENST00000591878.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	32	2	1.8707	2.21688	2.56306	0.0523213	0.0247751	0.160182	0.131869
chr7	102371048	102371147	3371145	0	+	0.545455	(0.515,0.57]	chr7	315430	46	INTRON	INTRON	PRKRIP1:ENSG00000239969	ENSG00000128563.13:ENSG00000239969.6	ENST00000477886.5:ENST00000469763.5:ENST00000482549.5:ENST00000496391.5:ENST00000484974.5:ENST00000492837.1:ENST00000482465.5	protein_coding	protein_coding	protein_coding:transcribed_unprocessed_pseudogene	protein_coding:processed_transcript	3	32	2	1.8707	2.21688	2.56306	0.0523213	0.0247751	0.160182	0.131869
chr8	129877389	129877489	4062527	0	-	0.52	(0.515,0.57]	chr8	369780	55	INTRON	INTRON	CYRIB	ENSG00000153310.21	ENST00000694912.1:ENST00000519824.6:ENST00000523288.5:ENST00000519110.5:ENST00000401979.6:ENST00000523509.5:ENST00000522746.5:ENST00000517654.5:ENST00000522250.5:ENST00000519540.5:ENST00000522941.5:ENST00000519142.5:ENST00000518879.5:ENST00000522702.5:ENST00000521223.5:ENST00000520204.5:ENST00000518283.5:ENST00000523993.5:ENST00000520254.5:ENST00000519020.5:ENST00000518167.5:ENST00000517672.5:ENST00000519070.5:ENST00000522361.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	32	2	1.8707	2.21688	2.56306	0.0523213	0.0247751	0.160182	0.131869
chr11	125658645	125658745	4883327	0	+	0.29	(0.28,0.32]	chr11	456613	16	INTRON	INTRON	CHEK1	ENSG00000149554.14	ENST00000428830.6:ENST00000524737.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	118	2	1.84658	2.216865	2.58715	0.0128582	0.00300718	0.0990564	0.0493883
chr16	87753804	87753903	6538554	0	-	0.50505	(0.476,0.515]	chr16	633553	30	INTRON	INTRON	KLHDC4	ENSG00000104731.14	ENST00000567298.5:ENST00000270583.10:ENST00000347925.9:ENST00000353170.9:ENST00000562155.5:ENST00000622456.4:ENST00000562261.1:ENST00000566661.5:ENST00000564484.5:ENST00000565328.5:ENST00000569747.5:ENST00000564396.5:ENST00000568502.1:ENST00000561825.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	37	2	1.86492	2.2168	2.56868	0.0550347	0.0256676	0.165463	0.133676
chr5	138339004	138339103	2494736	0	+	0.575758	(0.57,1]	chr5	238435	3	INTRON	INTRON	FAM53C	ENSG00000120709.11	ENST00000512180.5:ENST00000434981.6:ENST00000507506.5:ENST00000505768.1:ENST00000239906.10:ENST00000513056.5:ENST00000511024.5:ENST00000511276.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	46	2	1.95367	2.2168	2.47993	0.007207	0.00422673	0.0756278	0.0572185
chr17	40034171	40034271	6767730	0	-	0.38	(0.378,0.408]	chr17	665809	4	SS3_PROX	SS3_PROX:INTRON	MED24	ENSG00000008838.21	ENST00000394126.5:ENST00000356271.7:ENST00000394128.7:ENST00000394127.6:ENST00000535508.6:ENST00000501516.7:ENST00000535071.6:ENST00000580885.5:ENST00000578901.1:ENST00000428757.6:ENST00000580008.5:ENST00000479829.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	62	2	1.99678	2.216675	2.43657	0.0177959	0.0106733	0.113452	0.0861859
chr5	97034120	97034220	2435824	0	+	0.38	(0.378,0.408]	chr5	234078	57	UTR3	UTR3:EXON_MRNA	LNPEP	ENSG00000113441.16	ENST00000231368.10	protein_coding	protein_coding	protein_coding	protein_coding	5	62	2	1.99678	2.216675	2.43657	0.0177959	0.0106733	0.113452	0.0861859
chr3	177139833	177139933	1871869	0	-	0.34	(0.32,0.35]	chr3	187422	37	INTRON	INTRON	TBL1XR1	ENSG00000177565.18	ENST00000457928.7:ENST00000430069.5:ENST00000673974.1:ENST00000352800.10:ENST00000422442.6:ENST00000428970.5:ENST00000424913.5:ENST00000437738.5:ENST00000431421.5:ENST00000635794.1:ENST00000630796.2:ENST00000450267.5:ENST00000630833.2:ENST00000431674.5:ENST00000422066.5:ENST00000443315.5:ENST00000627825.2:ENST00000427349.5:ENST00000413084.5:ENST00000637137.1:ENST00000491623.2:ENST00000637544.1:ENST00000636187.1:ENST00000636912.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	80	2	1.53859	2.21667	2.89475	0.0534261	0.00160352	0.162935	0.0367961
chr11	108082622	108082721	4856480	0	+	0.373737	(0.35,0.378]	chr11	452929	40	INTRON	INTRON	CUL5	ENSG00000166266.14	ENST00000393094.7:ENST00000531427.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	58	2	1.56881	2.21666	2.86451	0.047622	0.0109111	0.153019	0.0923273
chr12	108721853	108721952	5406689	0	-	0.353535	(0.35,0.378]	chr12	516035	189	INTRON	INTRON	CORO1C	ENSG00000110880.11	ENST00000261401.8:ENST00000541050.5:ENST00000549384.5:ENST00000550542.5:ENST00000552871.5:ENST00000551550.5:ENST00000546571.5:ENST00000551044.1:ENST00000551059.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	55	2	2.10859	2.216615	2.32464	0.0272722	0.0159285	0.136494	0.101453
chr17	30139517	30139617	6587617	0	+	0.36	(0.35,0.378]	chr17	640563	114	INTRON	INTRON	NSRP1	ENSG00000126653.18	ENST00000540900.7:ENST00000612959.4:ENST00000247026.10:ENST00000577289.6:ENST00000584154.5:ENST00000394826.8:ENST00000475652.5:ENST00000584317.5:ENST00000583301.5:ENST00000585881.5:ENST00000467446.6:ENST00000580103.6:ENST00000581048.5:ENST00000588614.1:ENST00000589608.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	55	2	2.10859	2.216615	2.32464	0.0272722	0.0159285	0.136494	0.101453
chr22	20118047	20118135	7478590	0	+	0.602273	(0.57,1]	chr22	762774	4	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	RANBP1	ENSG00000099901.17	ENST00000435265.5:ENST00000432879.5:ENST00000430524.6:ENST00000402752.5:ENST00000488484.1:ENST00000331821.7:ENST00000411892.5:ENST00000467920.1:ENST00000416427.5:ENST00000421656.5:ENST00000423859.5:ENST00000418705.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	45	2	1.98953	2.216545	2.44356	0.0182848	0.00109465	0.115629	0.0304174
chr2	241317155	241317236	1053615	0	+	0.407407	(0.378,0.408]	chr2	112184	2	SS3_PROX	SS3_PROX:INTRON	SEPTIN2	ENSG00000168385.18	ENST00000391973.6:ENST00000428282.5:ENST00000492978.5:ENST00000360051.7:ENST00000407017.5:ENST00000445030.5:ENST00000428524.5:ENST00000469434.5:ENST00000616972.4:ENST00000495463.5:ENST00000482304.5:ENST00000475474.5:ENST00000401990.5:ENST00000469175.5:ENST00000407971.5:ENST00000461048.5:ENST00000457335.5:ENST00000436795.5:ENST00000494824.5:ENST00000411484.5:ENST00000462147.5:ENST00000434955.5:ENST00000466211.5:ENST00000391971.7:ENST00000402092.6:ENST00000484740.1:ENST00000473479.5:ENST00000464128.5:ENST00000441533.5:ENST00000467971.5:ENST00000425899.5:ENST00000443492.5:ENST00000437066.5:ENST00000484648.1:ENST00000429791.5:ENST00000420786.5:ENST00000475823.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	121	2	1.90014	2.2165299999999997	2.53292	0.0110079	4.51433e-4	0.0873897	0.0192381
chr12	91460239	91460339	5383818	0	-	0.36	(0.35,0.378]	chr12	513479	605	INTRON	INTRON	ENSG00000289605	ENSG00000289605.1	ENST00000685093.1	lncRNA	lncRNA	lncRNA	lncRNA	3	40	2	2.10859	2.21651	2.32443	0.0544216	0.0272722	0.164972	0.136494
chr2	24530388	24530488	709648	0	+	0.37	(0.35,0.378]	chr2	82200	378	INTRON	INTRON	NCOA1	ENSG00000084676.16	ENST00000348332.8:ENST00000496333.5:ENST00000406961.5:ENST00000469850.5:ENST00000405141.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	40	2	2.10859	2.21651	2.32443	0.0544216	0.0272722	0.164972	0.136494
chrX	123655957	123656057	7878274	0	-	0.52	(0.515,0.57]	chrX	802527	102	INTRON	INTRON	THOC2	ENSG00000125676.20	ENST00000245838.13:ENST00000355725.8:ENST00000491737.5	protein_coding	protein_coding	protein_coding	protein_coding	6	61	2	2.06758	2.21646	2.36534	0.0140038	0.00404547	0.0959618	0.0578376
chr1	32664033	32664133	65960	0	+	0.53	(0.515,0.57]	chr1	8429	13	INTRON	INTRON	RBBP4	ENSG00000162521.19	ENST00000414241.7:ENST00000527118.5:ENST00000373493.10:ENST00000401893.7:ENST00000524393.5:ENST00000492348.6:ENST00000526193.5:ENST00000373485.5:ENST00000477563.6:ENST00000458695.6:ENST00000445722.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	61	2	2.11384	2.21643	2.31902	0.0118599	0.00493032	0.0899583	0.0646039
chr20	1369359	1369454	7305129	0	-	0.473684	(0.44,0.476]	chr20	743666	5	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	FKBP1A	ENSG00000088832.18	ENST00000677937.1:ENST00000439640.5:ENST00000618612.5:ENST00000400137.9:ENST00000460490.2:ENST00000678136.1:ENST00000677335.1:ENST00000474657.6:ENST00000381719.8:ENST00000678408.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	22	250	2	2.10613	2.21642	2.32671	6.35021e-4	2.50846e-4	0.0231636	0.0140762
chr22	24090488	24090587	7485978	0	+	0.373737	(0.35,0.378]	chr22	763868	24	INTRON	INTRON	CABIN1	ENSG00000099991.18	ENST00000263119.10:ENST00000617531.4:ENST00000405822.6:ENST00000398319.6:ENST00000496016.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	90	2	2.06612	2.21639	2.36666	0.0164908	0.00212276	0.102419	0.0426185
chrX	73963978	73964075	7682297	0	+	0.494845	(0.476,0.515]	chrX	786634	8	INTRON	INTRON	JPX	ENSG00000225470.8	ENST00000664637.1:ENST00000639185.1:ENST00000655090.1:ENST00000640437.1:ENST00000660546.1:ENST00000667886.1:ENST00000660840.1:ENST00000657179.1:ENST00000670506.1:ENST00000657910.1:ENST00000662120.1:ENST00000671207.1:ENST00000659254.1:ENST00000656624.1:ENST00000667573.1:ENST00000660856.1:ENST00000660836.1:ENST00000668590.1:ENST00000658649.1:ENST00000414209.6:ENST00000654137.1:ENST00000670994.1:ENST00000653479.1:ENST00000602772.5:ENST00000655879.1:ENST00000657372.1:ENST00000657096.1:ENST00000602985.6:ENST00000670685.1:ENST00000670503.1:ENST00000663027.1:ENST00000654995.1:ENST00000602895.6:ENST00000654374.1:ENST00000660087.1:ENST00000665032.1:ENST00000671336.1:ENST00000671476.1:ENST00000667057.1:ENST00000670192.1:ENST00000670464.1:ENST00000665345.1:ENST00000661546.1:ENST00000662543.1:ENST00000602938.6:ENST00000664295.1:ENST00000654005.1:ENST00000669149.1:ENST00000659852.1:ENST00000656509.1:ENST00000602294.6:ENST00000667294.1:ENST00000663470.1:ENST00000602920.6:ENST00000671021.1:ENST00000659849.1:ENST00000667937.1:ENST00000661130.1:ENST00000654196.1:ENST00000655994.1:ENST00000659373.1:ENST00000662239.1:ENST00000670805.1:ENST00000656263.1:ENST00000653069.1:ENST00000657638.1:ENST00000653808.1:ENST00000653929.1:ENST00000653885.1:ENST00000659023.1:ENST00000602546.5:ENST00000659622.1:ENST00000671518.1:ENST00000670408.1	lncRNA	lncRNA	lncRNA	lncRNA	10	119	2	1.97876	2.216145	2.45353	0.00655939	9.04659e-4	0.0735539	0.0278365
chr15	68125858	68125958	6056672	0	+	0.46	(0.44,0.476]	chr15	576567	376	INTRON	INTRON	PIAS1	ENSG00000033800.14	ENST00000564915.5:ENST00000249636.11:ENST00000562190.1:ENST00000545237.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	39	2	2.13779	2.21602	2.29425	0.0518406	0.0264596	0.176696	0.122506
chr10	43404922	43405022	4605464	0	-	0.47	(0.44,0.476]	chr10	424262	77	INTRON	INTRON	HNRNPF	ENSG00000169813.17	ENST00000356053.7:ENST00000357065.8:ENST00000682386.1:ENST00000337970.7	protein_coding	protein_coding	protein_coding	protein_coding	4	44	2	1.75627	2.215995	2.67572	0.0380723	0.0212064	0.157702	0.113017
chr1	245897848	245897948	674602	0	-	0.36	(0.35,0.378]	chr1	79681	336	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000366517.5:ENST00000366516.5:ENST00000490107.6:ENST00000470510.5:ENST00000493441.5:ENST00000488153.5:ENST00000492487.5:ENST00000391836.3:ENST00000464398.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	103	2	1.6756	2.215955	2.75631	0.0219737	0.00113582	0.123836	0.0307499
chr18	3011517	3011617	6945084	0	-	0.47	(0.44,0.476]	chr18	686841	4	SS5_PROX	SS5_PROX:INTRON	LPIN2	ENSG00000101577.10	ENST00000261596.8:ENST00000677752.1	protein_coding	protein_coding	protein_coding	protein_coding	9	99	2	1.95383	2.215935	2.47804	0.00489311	0.00325838	0.0641889	0.0508595
chr3	141916974	141917074	1526488	0	+	0.46	(0.44,0.476]	chr3	159045	4	SS5_PROX	SS5_PROX:INTRON	ATP1B3	ENSG00000069849.11	ENST00000465172.5:ENST00000286371.8:ENST00000466678.5:ENST00000462082.1:ENST00000482635.1:ENST00000487199.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	145	2	1.71781	2.215875	2.71394	0.00956926	1.54858e-4	0.0820838	0.0106835
chr17	4348677	4348777	6712186	0	-	0.45	(0.44,0.476]	chr17	657734	30	INTRON	INTRON	UBE2G1	ENSG00000132388.13	ENST00000396981.7:ENST00000572484.5:ENST00000574633.5:ENST00000571980.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	44	2	1.62896	2.215855	2.80275	0.0546679	0.0146513	0.182674	0.0982604
chr13	113857403	113857503	5653229	0	-	0.39	(0.378,0.408]	chr13	538809	90	INTRON	INTRON	GAS6	ENSG00000183087.15	ENST00000327773.7:ENST00000476291.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	38	2	2.04292	2.2158249999999997	2.38873	0.0458857	0.0326035	0.149888	0.145164
chr17	61827942	61828042	6808578	0	-	0.38	(0.378,0.408]	chr17	672605	188	INTRON	INTRON	BRIP1	ENSG00000136492.10	ENST00000259008.7:ENST00000682755.1:ENST00000682453.1:ENST00000683039.1:ENST00000682989.1:ENST00000682589.1:ENST00000683235.1:ENST00000682477.1:ENST00000684584.1:ENST00000577598.5:ENST00000682066.1:ENST00000584322.2:ENST00000683381.1:ENST00000579028.2:ENST00000682611.1:ENST00000683692.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	38	2	2.04292	2.2158249999999997	2.38873	0.0458857	0.0326035	0.149888	0.145164
chr2	131292276	131292366	866307	0	+	0.511111	(0.476,0.515]	chr2	97303	6	EXON_LNCRNA	EXON_LNCRNA:INTRON	PLEKHB2:FAR2P4	ENSG00000115762.17:ENSG00000231431.7	ENST00000404460.5:ENST00000560285.5:ENST00000416266.2	protein_coding	protein_coding	protein_coding:transcribed_unprocessed_pseudogene	protein_coding:processed_transcript	6	71	2	2.05714	2.2158100000000003	2.37448	0.0156961	0.00419067	0.101453	0.0591344
chr10	63505248	63505348	4635786	0	-	0.5	(0.476,0.515]	chr10	426242	394	INTRON	INTRON	JMJD1C	ENSG00000171988.20	ENST00000633035.1	protein_coding	processed_transcript	protein_coding	processed_transcript	10	116	2	2.16055	2.215765	2.27098	0.00292015	0.00215979	0.0494641	0.0417866
chr22	18561831	18561931	7550970	0	-	0.5	(0.476,0.515]	chr22	771829	89	INTRON	INTRON	PI4KAP1	ENSG00000274602.5	ENST00000612500.4:ENST00000611748.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	3	37	2	2.19809	2.21572	2.23335	0.0634557	0.020317	0.177047	0.121522
chr7	107198292	107198390	3378664	0	+	0.479592	(0.476,0.515]	chr7	316368	13	INTRON	INTRON	HBP1	ENSG00000105856.14	ENST00000468410.5:ENST00000222574.9:ENST00000485846.5:ENST00000463202.5:ENST00000461963.1:ENST00000607681.1:ENST00000463790.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	37	2	2.19809	2.21572	2.23335	0.0634557	0.020317	0.177047	0.121522
chr3	19953352	19953451	1376098	0	+	0.333333	(0.32,0.35]	chr3	145051	1	INTRON	INTRON	RAB5A	ENSG00000144566.11	ENST00000273047.9:ENST00000412966.5:ENST00000446547.5:ENST00000422242.1:ENST00000469122.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	143	2	1.16171	2.215705	3.2697	0.0663637	5.58713e-5	0.18226	0.00612005
chr7	157375925	157376025	3455704	0	+	0.5	(0.476,0.515]	chr7	323102	38	INTRON	INTRON	DNAJB6	ENSG00000105993.15	ENST00000441561.5:ENST00000429029.6:ENST00000262177.9:ENST00000417758.5:ENST00000459889.5:ENST00000443280.5:ENST00000441291.5:ENST00000412557.5:ENST00000634080.1:ENST00000468928.5:ENST00000465908.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	113	2	1.73456	2.215685	2.69681	0.0140928	3.73388e-4	0.0959618	0.0174227
chr1	50657526	50657626	449220	0	-	0.38	(0.378,0.408]	chr1	54229	16	INTRON	INTRON	FAF1	ENSG00000185104.21	ENST00000396153.7:ENST00000494400.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	38	2	1.89621	2.21562	2.53503	0.0488044	0.0319942	0.173377	0.13174
chr1	120581991	120582091	535560	0	-	0.38	(0.378,0.408]	chr1	63034	24	INTRON	INTRON	PDE4DIPP2	ENSG00000275131.3	ENST00000612480.2	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	3	38	2	1.89621	2.21562	2.53503	0.0488044	0.0319942	0.173377	0.13174
chr6	4059014	4059114	2790091	0	+	0.39	(0.378,0.408]	chr6	263557	2	SS5_PROX	SS5_PROX:INTRON	PRPF4B	ENSG00000112739.17	ENST00000480058.5:ENST00000337659.11:ENST00000481109.5:ENST00000463634.6:ENST00000494674.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	38	2	1.89621	2.21562	2.53503	0.0488044	0.0319942	0.173377	0.13174
chr6	73468953	73469050	2904151	0	+	0.402062	(0.378,0.408]	chr6	274350	20	INTRON	INTRON	MTO1	ENSG00000135297.17	ENST00000415954.6:ENST00000681094.1:ENST00000680289.1:ENST00000680775.1:ENST00000680609.1:ENST00000681212.1:ENST00000679627.1:ENST00000679675.1:ENST00000680350.1:ENST00000681610.1:ENST00000681294.1:ENST00000680686.1:ENST00000681509.1:ENST00000680570.1:ENST00000680131.1:ENST00000681284.1:ENST00000681890.1:ENST00000680266.1:ENST00000680875.1:ENST00000679905.1:ENST00000681620.1:ENST00000681204.1:ENST00000681705.1:ENST00000681691.1:ENST00000679612.1:ENST00000681141.1:ENST00000498286.6:ENST00000681254.1:ENST00000681624.1:ENST00000679418.1:ENST00000681579.1:ENST00000681267.1:ENST00000680902.1:ENST00000680238.1:ENST00000681165.1:ENST00000679364.1:ENST00000679411.1:ENST00000679604.1:ENST00000679900.1:ENST00000680601.1:ENST00000487960.2:ENST00000521156.6:ENST00000445187.6:ENST00000521032.6:ENST00000485082.2:ENST00000680034.1:ENST00000442897.7:ENST00000679808.1:ENST00000679993.1:ENST00000522205.6:ENST00000680544.1:ENST00000370305.5:ENST00000680428.1:ENST00000679352.1:ENST00000679524.1:ENST00000681932.1:ENST00000680195.1:ENST00000681438.1:ENST00000679730.1:ENST00000681337.1:ENST00000679947.1:ENST00000680405.1:ENST00000680794.1:ENST00000679870.1:ENST00000524046.2:ENST00000679592.1:ENST00000370300.8:ENST00000370308.8:ENST00000415228.5:ENST00000462039.5:ENST00000680758.1:ENST00000523763.2:ENST00000679591.1:ENST00000680841.1:ENST00000680563.1:ENST00000518210.5:ENST00000681500.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	38	2	1.89621	2.21562	2.53503	0.0488044	0.0319942	0.173377	0.13174
chr11	59637404	59637502	4954619	0	-	0.438776	(0.408,0.44]	chr11	465245	8	UTR3	UTR3:EXON_MRNA	PATL1	ENSG00000166889.14	ENST00000300146.10	protein_coding	protein_coding	protein_coding	protein_coding	5	60	2	1.69172	2.215565	2.73941	0.0486032	0.002744	0.153946	0.0484022
chr5	19105771	19105871	2570123	0	-	0.45	(0.44,0.476]	chr5	246210	671	INTRON	INTRON	ENSG00000249174	ENSG00000249174.1	ENST00000504827.1	lncRNA	lncRNA	lncRNA	lncRNA	6	72	2	1.85904	2.21552	2.572	0.029889	0.00173736	0.129138	0.03851
chr5	134165376	134165476	2726238	0	-	0.47	(0.44,0.476]	chr5	256488	36	INTRON	INTRON	SKP1	ENSG00000113558.19	ENST00000353411.11:ENST00000522552.5:ENST00000521216.5:ENST00000517625.5:ENST00000523966.5:ENST00000522855.5:ENST00000328392.10:ENST00000519054.5:ENST00000519321.5:ENST00000520417.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	72	2	1.85904	2.21552	2.572	0.029889	0.00173736	0.129138	0.03851
chr1	89562404	89562503	157778	0	+	0.282828	(0.28,0.32]	chr1	17177	30	INTRON	INTRON	LRRC8B	ENSG00000197147.15	ENST00000330947.7:ENST00000439853.6:ENST00000449440.5:ENST00000640258.1:ENST00000639264.1	protein_coding	protein_coding	protein_coding	protein_coding	5	64	2	1.60333	2.21551	2.82769	0.0413158	0.0169391	0.161534	0.103888
chr11	68474401	68474501	4817469	0	+	0.29	(0.28,0.32]	chr11	448907	132	INTRON	INTRON	PPP6R3	ENSG00000110075.15	ENST00000530427.5:ENST00000528635.5:ENST00000529907.5:ENST00000533127.5:ENST00000534534.5:ENST00000529344.5:ENST00000524845.5:ENST00000393800.7:ENST00000265637.8:ENST00000524904.5:ENST00000393801.7:ENST00000265636.9:ENST00000529710.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	64	2	1.60333	2.21551	2.82769	0.0413158	0.0169391	0.161534	0.103888
chr19	1392141	1392241	6995053	0	+	0.45	(0.44,0.476]	chr19	693155	4	EXON_MRNA	EXON_MRNA:INTRON	NDUFS7	ENSG00000115286.21	ENST00000546283.5:ENST00000545446.5:ENST00000543289.5:ENST00000539480.5:ENST00000538662.5:ENST00000313408.11:ENST00000436115.6:ENST00000233627.14:ENST00000534853.5:ENST00000546172.7:ENST00000414651.3:ENST00000538929.5:ENST00000622587.4:ENST00000538523.5:ENST00000540530.5:ENST00000535382.1:ENST00000591358.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	76	2	1.34221	2.21549	3.08877	0.0656882	5.52878e-4	0.181162	0.021371
chr6	149604460	149604560	3245677	0	-	0.42	(0.408,0.44]	chr6	301577	4	SS5_PROX	SS5_PROX:INTRON	KATNA1	ENSG00000186625.14	ENST00000335643.12:ENST00000367411.7:ENST00000335647.9:ENST00000494504.5:ENST00000470620.1:ENST00000444282.5:ENST00000420200.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	50	2	2.21238	2.215475	2.21857	0.0209591	0.0193525	0.119831	0.112046
chr5	43300773	43300873	2614307	0	-	0.32	(0.28,0.32]	chr5	248522	14	INTRON	INTRON	HMGCS1	ENSG00000112972.15	ENST00000325110.11:ENST00000433297.2:ENST00000507004.1:ENST00000507293.1:ENST00000511774.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	92	2	1.86798	2.215445	2.56291	0.0335733	0.00227849	0.134145	0.0437013
chr2	20293477	20293576	1076199	0	-	0.474747	(0.44,0.476]	chr2	114982	23	INTRON	INTRON	PUM2	ENSG00000055917.16	ENST00000338086.9:ENST00000361078.7:ENST00000440577.5	protein_coding	protein_coding	protein_coding	protein_coding	4	45	2	1.61163	2.2152950000000002	2.81896	0.0598319	0.0120766	0.169278	0.0962311
chr19	3466637	3466737	7000643	0	+	0.46	(0.44,0.476]	chr19	694235	40	UTR3	UTR3:EXON_MRNA	NFIC	ENSG00000141905.19	ENST00000641145.1:ENST00000589123.5:ENST00000443272.3	protein_coding	protein_coding	protein_coding	protein_coding	8	87	2	1.78386	2.215275	2.64669	0.0118461	0.0040295	0.0899583	0.0578376
chr15	82368263	82368363	6075663	0	+	0.32	(0.28,0.32]	chr15	578727	125	INTRON	INTRON	UBE2Q2P2	ENSG00000259429.5	ENST00000618775.4	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	4	63	2	1.91611	2.215185	2.51426	0.0539102	0.00781326	0.164153	0.0788246
chr4	126622689	126622789	2236936	0	-	0.29	(0.28,0.32]	chr4	219023	1572	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	4	63	2	1.91611	2.215185	2.51426	0.0539102	0.00781326	0.164153	0.0788246
chr1	47306789	47306889	446038	0	-	0.4	(0.378,0.408]	chr1	54067	14	INTRON	INTRON	STIL	ENSG00000123473.17	ENST00000360380.7:ENST00000371877.8:ENST00000337817.10:ENST00000682977.1:ENST00000396221.6:ENST00000447475.7:ENST00000436811.2	protein_coding	protein_coding	protein_coding	protein_coding	6	71	2	1.64169	2.21518	2.78867	0.0377255	0.00226991	0.14078	0.0437013
chr13	112821248	112821347	5547571	0	+	0.282828	(0.28,0.32]	chr13	529967	9	INTRON	INTRON	ATP11A	ENSG00000068650.19	ENST00000375645.8:ENST00000375630.6:ENST00000487903.5:ENST00000459908.5:ENST00000418678.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	47	2	2.18975	2.21518	2.24061	0.0776042	0.0194267	0.196285	0.119831
chr2	43959900	43959997	1110247	0	-	0.319588	(0.28,0.32]	chr2	119079	8	UTR3	UTR3:EXON_MRNA:INTRON	LRPPRC	ENSG00000138095.20	ENST00000260665.12:ENST00000682308.1:ENST00000683459.1:ENST00000683623.1:ENST00000683125.1:ENST00000683994.1:ENST00000684619.1:ENST00000683833.1:ENST00000682546.1:ENST00000682585.1:ENST00000683220.1:ENST00000683796.1:ENST00000683590.1:ENST00000684306.1:ENST00000683213.1:ENST00000682779.1:ENST00000682885.1:ENST00000684743.1:ENST00000683346.1:ENST00000683072.1:ENST00000682303.1:ENST00000683329.1:ENST00000684383.1:ENST00000682480.1:ENST00000684290.1:ENST00000684341.1:ENST00000682595.1:ENST00000683802.1:ENST00000681961.1:ENST00000683694.1:ENST00000683989.1:ENST00000447246.2:ENST00000409659.6:ENST00000682104.1:ENST00000683934.1:ENST00000681959.1:ENST00000684482.1:ENST00000683082.1:ENST00000467058.2:ENST00000409946.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	47	2	2.18975	2.21518	2.24061	0.0776042	0.0194267	0.196285	0.119831
chr10	28615672	28615772	4414646	0	+	0.34	(0.32,0.35]	chr10	407198	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	WAC	ENSG00000095787.24	ENST00000680735.1:ENST00000375664.8:ENST00000628285.3:ENST00000681112.1:ENST00000679570.1:ENST00000375646.5:ENST00000354911.9:ENST00000347934.8:ENST00000420266.6:ENST00000679398.1:ENST00000442148.6:ENST00000414108.6:ENST00000679428.1:ENST00000439676.5:ENST00000345541.6:ENST00000480474.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	104	2	1.56183	2.215095	2.86836	0.0202633	0.00250845	0.121406	0.0446195
chr11	57773616	57773715	4793249	0	+	0.373737	(0.35,0.378]	chr11	443717	91	INTRON	INTRON	ENSG00000288534:CTNND1	ENSG00000288534.1:ENSG00000198561.16	ENST00000673781.1:ENST00000673810.1:ENST00000674116.1:ENST00000674060.1:ENST00000524630.5:ENST00000529919.5:ENST00000533189.1:ENST00000682741.1:ENST00000358694.10:ENST00000361332.8:ENST00000361391.10:ENST00000361796.9:ENST00000415361.6:ENST00000426142.6:ENST00000428599.6:ENST00000525902.5:ENST00000526357.5:ENST00000526772.5:ENST00000527467.5:ENST00000528232.5:ENST00000528621.5:ENST00000529526.5:ENST00000529873.5:ENST00000529986.5:ENST00000530094.5:ENST00000530748.5:ENST00000531014.5:ENST00000532245.5:ENST00000532463.5:ENST00000532649.5:ENST00000532787.5:ENST00000532844.5:ENST00000533667.5:ENST00000534579.5:ENST00000399050.10:ENST00000526938.5:ENST00000531007.2:ENST00000674015.1:ENST00000673826.1:ENST00000673683.1:ENST00000674106.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	153	2	1.79087	2.21509	2.63931	0.0126818	1.50877e-4	0.0926667	0.0106137
chr3	33432638	33432738	1651635	0	-	0.27	[0,0.28]	chr3	169400	65	INTRON	INTRON	UBP1	ENSG00000153560.12	ENST00000283629.8:ENST00000447368.6:ENST00000283628.9:ENST00000456378.1:ENST00000496310.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	72	2	1.94204	2.215085	2.48813	0.0544139	0.00953591	0.164972	0.0863913
chr2	53958265	53958365	1120451	0	-	0.51	(0.476,0.515]	chr2	120102	86	INTRON	INTRON	PSME4	ENSG00000068878.15	ENST00000404125.6:ENST00000389993.7:ENST00000481518.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	74	2	1.48658	2.21504	2.9435	0.0206817	0.00929849	0.122348	0.0817766
chr7	95415875	95415973	3574013	0	-	0.479592	(0.476,0.515]	chr7	332944	1	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	PON2	ENSG00000105854.13	ENST00000222572.8:ENST00000633531.1:ENST00000455123.5:ENST00000433091.6:ENST00000633192.1:ENST00000446142.5:ENST00000469926.5:ENST00000491069.5:ENST00000490778.5:ENST00000632034.1:ENST00000493290.5:ENST00000478801.5:ENST00000460873.5:ENST00000493469.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	100	2	1.37743	2.2148849999999998	3.05234	0.0477443	1.48283e-4	0.153019	0.0105822
chr18	36141851	36141922	6891547	0	+	0.450704	(0.44,0.476]	chr18	682996	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ELP2	ENSG00000134759.14	ENST00000543127.5:ENST00000351393.10:ENST00000545632.5:ENST00000442325.6:ENST00000358232.11:ENST00000423854.6:ENST00000539560.5:ENST00000542430.5:ENST00000350494.10:ENST00000542824.5:ENST00000540799.1:ENST00000543439.5:ENST00000540730.5:ENST00000540323.5:ENST00000536373.5:ENST00000535093.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	106	2	1.90375	2.214865	2.52598	0.0156406	4.52247e-4	0.101393	0.0192381
chr6	15246162	15246256	2822945	0	+	0.478723	(0.476,0.515]	chr6	265182	2	UTR5	UTR5:EXON_MRNA	JARID2	ENSG00000008083.14	ENST00000341776.7	protein_coding	protein_coding	protein_coding	protein_coding	19	211	2	2.17167	2.21483	2.25799	7.45091e-4	3.88152e-4	0.0251072	0.0177751
chr3	108047392	108047492	1768841	0	-	0.34	(0.32,0.35]	chr3	178904	1	SS3_PROX	SS3_PROX:INTRON	CD47	ENSG00000196776.17	ENST00000361309.6:ENST00000355354.13:ENST00000471694.1:ENST00000517766.5:ENST00000398258.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	73	2	2.0516	2.21477	2.37794	0.0498601	0.00531074	0.156383	0.0659476
chr13	114283825	114283921	5550848	0	+	0.5	(0.476,0.515]	chr13	530559	2	INTRON	INTRON	UPF3A	ENSG00000169062.15	ENST00000375299.8:ENST00000351487.5:ENST00000484246.5:ENST00000480362.5:ENST00000474056.5:ENST00000493727.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	70	2	1.99699	2.214705	2.43242	0.0110277	0.0091895	0.0873897	0.0855292
chr1	52686331	52686430	458595	0	-	0.535354	(0.515,0.57]	chr1	55119	20	UTR3	UTR3:EXON_MRNA	COA7	ENSG00000162377.6	ENST00000371538.5	protein_coding	protein_coding	protein_coding	protein_coding	4	40	2	1.8661	2.21458	2.56306	0.0274846	0.0247751	0.131869	0.123904
chr19	48618653	48618748	7199085	0	-	0.568421	(0.515,0.57]	chr19	729807	2	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	RPL18	ENSG00000063177.13	ENST00000552347.5:ENST00000547897.5:ENST00000551749.5:ENST00000552588.5:ENST00000549920.6:ENST00000550645.5:ENST00000547892.1:ENST00000549370.5:ENST00000549273.5:ENST00000550973.5:ENST00000552705.5:ENST00000552851.1:ENST00000550671.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:non_stop_decay:nonsense_mediated_decay	7	77	2	1.88259	2.21457	2.54655	0.0251849	8.595e-4	0.133519	0.0267428
chr10	101784728	101784824	4680618	0	-	0.385417	(0.378,0.408]	chr10	431933	4	UTR3	UTR3:EXON_MRNA	OGA	ENSG00000198408.14	ENST00000439817.5:ENST00000361464.8	protein_coding	protein_coding	protein_coding	protein_coding	7	79	2	1.37524	2.214565	3.05389	0.0610755	6.75567e-4	0.172411	0.0236067
chr3	12638796	12638896	1617178	0	-	0.42	(0.408,0.44]	chr3	166990	92	INTRON	INTRON	RAF1	ENSG00000132155.14	ENST00000688543.1:ENST00000685348.1:ENST00000251849.9:ENST00000442415.7:ENST00000688444.1:ENST00000692093.1:ENST00000691724.1:ENST00000423275.6:ENST00000687326.1:ENST00000688803.1:ENST00000689876.1:ENST00000686455.1:ENST00000684903.1:ENST00000693312.1:ENST00000690460.1:ENST00000692773.1:ENST00000688625.1:ENST00000693664.1:ENST00000686762.1:ENST00000692311.1:ENST00000692558.1:ENST00000691779.1:ENST00000685738.1:ENST00000690397.1:ENST00000687923.1:ENST00000688269.1:ENST00000693705.1:ENST00000689097.1:ENST00000691899.1:ENST00000689914.1:ENST00000690625.1:ENST00000689389.1:ENST00000687257.1:ENST00000686409.1:ENST00000685653.1:ENST00000689540.1:ENST00000691396.1:ENST00000685437.1:ENST00000689418.1:ENST00000687940.1:ENST00000689481.1:ENST00000491290.2:ENST00000686479.1:ENST00000689033.1:ENST00000692777.1:ENST00000689226.1:ENST00000691718.1:ENST00000692959.1:ENST00000685740.1:ENST00000688753.1:ENST00000688779.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	70	2	2.16746	2.21453	2.2616	0.024436	0.00321416	0.12011	0.0523065
chr7	102862329	102862429	3590242	0	-	0.25	[0,0.28]	chr7	335159	71	INTRON	INTRON	FBXL13	ENSG00000161040.18	ENST00000694871.1:ENST00000694870.1:ENST00000448002.6:ENST00000379305.7:ENST00000440067.3:ENST00000456695.6:ENST00000313221.8:ENST00000436908.5:ENST00000455112.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	66	2	2.09841	2.21448	2.33055	0.062338	0.0151026	0.175343	0.108435
chr7	884203	884303	3269186	0	+	0.67	(0.57,1]	chr7	303676	1	CDS_START	CDS_START:CDS:UTR5:EXON_MRNA:INTRON	SUN1:GET4	ENSG00000164828.18:ENSG00000239857.7	ENST00000457861.1:ENST00000265857.8:ENST00000412734.6:ENST00000407192.5:ENST00000441491.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	59	2	1.80787	2.2144500000000003	2.62103	0.0086124	4.01771e-4	0.0838082	0.0185763
chr17	29401737	29401836	6585749	0	+	0.484848	(0.476,0.515]	chr17	640373	104	INTRON	INTRON	ENSG00000266111:TAOK1	ENSG00000266111.2:ENSG00000160551.12	ENST00000584958.2:ENST00000261716.8:ENST00000583121.5:ENST00000587277.1:ENST00000536202.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	8	82	2	1.5222	2.21444	2.90668	0.0276881	0.00164243	0.137011	0.0369207
chr3	94018730	94018830	1458490	0	+	0.48	(0.476,0.515]	chr3	153286	138	INTRON	INTRON	ARL13B	ENSG00000169379.17	ENST00000535334.5:ENST00000303097.11:ENST00000681247.1:ENST00000679739.1:ENST00000680414.1:ENST00000681380.1:ENST00000681013.1:ENST00000680994.1:ENST00000679654.1:ENST00000486562.2:ENST00000679601.1:ENST00000394222.8:ENST00000471138.5:ENST00000679404.1:ENST00000679872.1:ENST00000681655.1:ENST00000460371.5:ENST00000679657.1:ENST00000335438.7:ENST00000679666.1:ENST00000679607.1:ENST00000679587.1:ENST00000680430.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	49	2	2.10874	2.214375	2.32001	0.0285608	0.0136217	0.12666	0.101682
chr6	167947176	167947264	3035573	0	+	0.511364	(0.476,0.515]	chr6	282861	3	SS5_PROX	SS5_PROX:INTRON	AFDN	ENSG00000130396.21	ENST00000683244.1:ENST00000351017.9:ENST00000344191.8:ENST00000392112.5:ENST00000392108.7:ENST00000400822.7:ENST00000447894.6:ENST00000366809.6:ENST00000366806.6:ENST00000511637.5:ENST00000485634.7:ENST00000507679.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	49	2	2.10874	2.214375	2.32001	0.0285608	0.0136217	0.12666	0.101682
chr2	65095672	65095772	1142617	0	-	0.42	(0.408,0.44]	chr2	122174	42	INTRON	INTRON	RAB1A	ENSG00000138069.18	ENST00000649427.1:ENST00000494188.1:ENST00000409784.8:ENST00000409892.5:ENST00000409751.1:ENST00000398529.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	75	2	1.53079	2.2143699999999997	2.89795	0.0173197	0.0110735	0.112111	0.0873897
chr3	42630349	42630447	1406278	0	+	0.265306	[0,0.28]	chr3	147680	33	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	NKTR	ENSG00000114857.19	ENST00000468735.6:ENST00000429888.5:ENST00000232978.13:ENST00000465584.5:ENST00000466553.1:ENST00000498730.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	169	2	2.11145	2.21435	2.31725	0.0113428	0.00145151	0.0886611	0.0349797
chr1	168008089	168008189	249213	0	+	0.49	(0.476,0.515]	chr1	29602	29	INTRON	INTRON	DCAF6	ENSG00000143164.16	ENST00000432587.6:ENST00000367843.7:ENST00000470721.5:ENST00000367840.4:ENST00000312263.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	15	167	2	1.949	2.2143450000000002	2.47969	0.00210201	4.8154e-4	0.0425419	0.0203411
chr21	6256847	6256946	7425207	0	-	0.30303	(0.28,0.32]	chr21	757453	16	INTRON	INTRON	ENSG00000275496	ENSG00000275496.4	ENST00000621924.4:ENST00000617746.4:ENST00000624446.1:ENST00000623405.3:ENST00000623575.3:ENST00000623506.1	lncRNA	lncRNA	lncRNA	lncRNA	5	77	2	1.99988	2.21428	2.42868	0.0228757	0.0105331	0.118056	0.0908969
chr12	70289240	70289338	5166893	0	+	0.326531	(0.32,0.35]	chr12	489387	33	INTRON	INTRON	CNOT2	ENSG00000111596.14	ENST00000547780.5:ENST00000418359.7:ENST00000552319.5:ENST00000550160.5:ENST00000551661.5:ENST00000551132.5:ENST00000553078.5:ENST00000548021.5:ENST00000550641.6:ENST00000229195.8:ENST00000552915.5:ENST00000549443.5:ENST00000548741.5:ENST00000552483.5:ENST00000552422.5:ENST00000547321.5:ENST00000553020.5:ENST00000548159.5:ENST00000549750.5:ENST00000551043.5:ENST00000548599.5:ENST00000550194.5:ENST00000551873.5:ENST00000547867.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	43	2	2.19668	2.21425	2.23182	0.068598	0.021398	0.184298	0.123719
chr22	20572886	20572985	7480026	0	+	0.323232	(0.32,0.35]	chr22	763022	39	INTRON	INTRON	MED15	ENSG00000099917.17	ENST00000433831.5:ENST00000292733.11:ENST00000263205.11:ENST00000406969.5:ENST00000382974.6:ENST00000492381.5:ENST00000478831.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	15	203	2	2.07529	2.214225	2.35316	0.00215197	8.28744e-4	0.0417866	0.0263691
chr22	21676013	21676113	7482552	0	+	0.59	(0.57,1]	chr22	763345	5	INTRON	INTRON	PPIL2	ENSG00000100023.20	ENST00000679795.1:ENST00000679540.1:ENST00000679580.1:ENST00000681286.1:ENST00000680061.1:ENST00000681338.1:ENST00000681956.1:ENST00000679827.1:ENST00000679534.1:ENST00000679479.1:ENST00000680393.1:ENST00000680463.1:ENST00000680426.1:ENST00000335025.12:ENST00000498109.2:ENST00000496819.2:ENST00000398831.8:ENST00000681394.1:ENST00000679477.1:ENST00000626352.2:ENST00000417788.5:ENST00000458567.5:ENST00000681791.1:ENST00000679692.1:ENST00000680962.1:ENST00000679857.1:ENST00000679586.1:ENST00000680094.1:ENST00000484439.5:ENST00000680434.1:ENST00000680109.1:ENST00000406385.1:ENST00000680022.1:ENST00000681137.1:ENST00000680860.1:ENST00000680183.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	27	2	1.77365	2.214175	2.6547	0.0670385	0.00346848	0.183051	0.0539802
chr3	42603651	42603751	1406001	0	+	0.23	[0,0.28]	chr3	147651	7	INTRON	INTRON	NKTR	ENSG00000114857.19	ENST00000468735.6:ENST00000460910.5:ENST00000487466.5:ENST00000429888.5:ENST00000232978.13:ENST00000442970.5:ENST00000445842.1:ENST00000478488.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	100	2	1.60899	2.2141450000000003	2.8193	0.0503341	0.00285248	0.156383	0.0494641
chr20	3345927	3346027	7307700	0	-	0.32	(0.28,0.32]	chr20	744173	18	INTRON	INTRON	DNAAF9	ENSG00000088854.13	ENST00000252032.10	protein_coding	protein_coding	protein_coding	protein_coding	5	76	2	1.68409	2.214135	2.74418	0.0548665	0.00328589	0.165463	0.0527031
chr7	140474489	140474589	3661585	0	-	0.32	(0.28,0.32]	chr7	339941	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	MKRN1	ENSG00000133606.11	ENST00000255977.7:ENST00000475010.5:ENST00000495305.5:ENST00000474576.5:ENST00000480552.5:ENST00000496169.5:ENST00000443720.6:ENST00000471104.5:ENST00000467513.5:ENST00000494939.1:ENST00000498535.1:ENST00000473444.1:ENST00000475180.5:ENST00000481705.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	76	2	1.68409	2.214135	2.74418	0.0548665	0.00328589	0.165463	0.0527031
chr16	89407355	89407455	6542762	0	-	0.58	(0.57,1]	chr16	634254	32	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000647238.1:ENST00000644045.1:ENST00000643147.1:ENST00000644139.1:ENST00000568512.6:ENST00000566973.1:ENST00000562211.2:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	20	2	1.9042	2.214125	2.52405	0.0476976	0.0263139	0.153019	0.133676
chr19	47609208	47609307	7085763	0	+	0.686869	(0.57,1]	chr19	709045	12	INTRON	INTRON	ENSG00000268746	ENSG00000268746.1	ENST00000599924.1	lncRNA	lncRNA	lncRNA	lncRNA	3	20	2	1.9042	2.214125	2.52405	0.0476976	0.0263139	0.153019	0.133676
chr6	3259795	3259895	2789252	0	+	0.63	(0.57,1]	chr6	263445	2	INTRON	INTRON	PSMG4	ENSG00000180822.12	ENST00000509933.1:ENST00000380306.8:ENST00000380305.4:ENST00000438998.7:ENST00000419065.6:ENST00000473000.2:ENST00000324987.4:ENST00000451246.2:ENST00000454610.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	20	2	1.9042	2.214125	2.52405	0.0476976	0.0263139	0.153019	0.133676
chr9	111901011	111901111	4184493	0	+	0.59	(0.57,1]	chr9	381684	33	INTRON	INTRON	UGCG	ENSG00000148154.10	ENST00000374279.4:ENST00000489355.1:ENST00000495085.1:ENST00000490110.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	20	2	1.9042	2.214125	2.52405	0.0476976	0.0263139	0.153019	0.133676
chr22	30969718	30969818	7501256	0	+	0.6	(0.57,1]	chr22	765292	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS5_PROX:INTRON	TUG1	ENSG00000253352.10	ENST00000646021.1:ENST00000646496.1:ENST00000644773.2:ENST00000569384.2:ENST00000643920.1:ENST00000602971.2:ENST00000519077.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	71	2	2.11241	2.21403	2.31565	0.00190628	5.89598e-4	0.0403772	0.0225024
chrX	113940599	113940699	7867445	0	-	0.38	(0.378,0.408]	chrX	801544	3244	EXON_LNCRNA	EXON_LNCRNA:INTRON	XACT	ENSG00000241743.4	ENST00000468762.3:ENST00000674361.1	lncRNA	lncRNA	lncRNA	lncRNA	5	57	2	1.71619	2.21401	2.71183	0.0300647	0.0170789	0.129153	0.110899
chr1	32195992	32196092	64331	0	+	0.48	(0.476,0.515]	chr1	8208	9	UTR3	UTR3:EXON_MRNA	TXLNA	ENSG00000084652.16	ENST00000373610.8:ENST00000373609.1	protein_coding	protein_coding	protein_coding	protein_coding	28	315	2	1.58255	2.2139699999999998	2.84539	0.00633203	3.22557e-6	0.0688566	0.00116609
chr7	23505265	23505363	3503676	0	-	0.255102	[0,0.28]	chr7	326929	6	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TRA2A	ENSG00000164548.12	ENST00000297071.9:ENST00000392502.8:ENST00000538367.6:ENST00000621813.4:ENST00000497730.1:ENST00000475970.1:ENST00000482395.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	21	334	2	2.03622	2.21395	2.39168	0.00144224	0.00112833	0.0342215	0.0308465
chr20	35728911	35729011	7336415	0	-	0.49	(0.476,0.515]	chr20	747463	2	SS5_PROX	SS5_PROX:INTRON	RBM39	ENSG00000131051.24	ENST00000253363.11:ENST00000639702.1:ENST00000656873.1:ENST00000463004.5:ENST00000361162.10:ENST00000461283.5:ENST00000403542.6:ENST00000338163.10:ENST00000528062.7:ENST00000429968.5:ENST00000444878.5:ENST00000665058.1:ENST00000492779.5:ENST00000448303.5:ENST00000374038.7:ENST00000412738.5:ENST00000434927.5:ENST00000425184.5:ENST00000481037.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	94	2	1.4273	2.213825	3.00035	0.0258675	0.00109036	0.133676	0.0303873
chr4	82879977	82880069	2179993	0	-	0.391304	(0.378,0.408]	chr4	214393	7	INTRON	INTRON	SEC31A	ENSG00000138674.17	ENST00000395310.7:ENST00000513858.5:ENST00000348405.8:ENST00000448323.5:ENST00000311785.11:ENST00000509142.5:ENST00000443462.6:ENST00000500777.6:ENST00000505472.5:ENST00000355196.6:ENST00000508502.5:ENST00000505984.5:ENST00000508479.5:ENST00000436790.6:ENST00000503058.5:ENST00000507816.5:ENST00000514326.5:ENST00000513323.5:ENST00000511975.5:ENST00000507340.5:ENST00000507867.5:ENST00000506497.5:ENST00000510310.1:ENST00000503210.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	46	2	1.89251	2.21377	2.53503	0.0319942	0.0251428	0.133404	0.13174
chr11	62671053	62671146	4960533	0	-	0.526882	(0.515,0.57]	chr11	466657	12	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	LBHD1	ENSG00000162194.13	ENST00000354588.8:ENST00000431002.6:ENST00000532208.5:ENST00000415855.6:ENST00000527679.5:ENST00000524759.1:ENST00000528862.2:ENST00000377954.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	14	130	2	1.91026	2.213755	2.51725	0.00215404	8.36453e-4	0.0417866	0.0263691
chr7	102654278	102654378	3589063	0	-	0.45	(0.44,0.476]	chr7	335089	116	INTRON	INTRON	ENSG00000267645	ENSG00000267645.5	ENST00000476151.5	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	13	153	2	2.1123	2.213705	2.31511	0.0023263	7.90141e-4	0.0442989	0.0259642
chr7	105114386	105114486	3601131	0	-	0.36	(0.35,0.378]	chr7	336043	28	INTRON	INTRON	SRPK2	ENSG00000135250.17	ENST00000493638.1	protein_coding	processed_transcript	protein_coding	processed_transcript	4	49	2	1.56287	2.21369	2.86451	0.0697648	0.0109111	0.184298	0.0923273
chr15	82500487	82500587	6247254	0	-	0.33	(0.32,0.35]	chr15	596152	222	INTRON	INTRON	GOLGA2P10	ENSG00000255769.7	ENST00000618004.4:ENST00000614347.4:ENST00000618267.4:ENST00000612379.4:ENST00000619738.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	6	66	2	1.57911	2.213615	2.84812	0.0313129	0.0147575	0.144381	0.0983813
chr5	134905820	134905917	2491718	0	+	0.391753	(0.378,0.408]	chr5	238078	2	INTRON	INTRON	PCBD2	ENSG00000132570.15	ENST00000512783.5:ENST00000254908.11:ENST00000504352.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	127	2	1.92269	2.21358	2.50447	0.00836891	8.06815e-4	0.0822143	0.026349
chr11	31506960	31507060	4939215	0	-	0.47	(0.44,0.476]	chr11	462601	184	INTRON	INTRON	IMMP1L	ENSG00000148950.11	ENST00000532287.6:ENST00000534812.5:ENST00000526776.5:ENST00000278200.5:ENST00000648582.1:ENST00000533642.1:ENST00000527184.5:ENST00000528161.5:ENST00000532624.5:ENST00000529749.5:ENST00000530023.5:ENST00000531693.1:ENST00000532668.1:ENST00000533921.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	68	2	1.56252	2.21352	2.86452	0.0465207	0.00159222	0.151387	0.0367961
chr1	39841448	39841546	427834	0	-	0.357143	(0.35,0.378]	chr1	51960	35	UTR3	UTR3:EXON_MRNA	TRIT1	ENSG00000043514.17	ENST00000316891.10:ENST00000648678.1:ENST00000537440.5:ENST00000372818.5:ENST00000462797.5:ENST00000441669.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	90	2	1.60176	2.2135100000000003	2.82526	0.0213692	0.00269503	0.123719	0.0466389
chr5	32147376	32147476	2597246	0	-	0.42	(0.408,0.44]	chr5	246744	31	INTRON	INTRON	GOLPH3	ENSG00000113384.14	ENST00000265070.7:ENST00000503610.5:ENST00000512668.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	69	2	2.15894	2.21343	2.26792	0.0179973	0.00504142	0.106756	0.0646039
chr10	73049076	73049174	4647361	0	-	0.397959	(0.378,0.408]	chr10	427518	16	INTRON	INTRON	P4HA1	ENSG00000122884.13	ENST00000394890.7:ENST00000307116.6:ENST00000373008.6:ENST00000440381.5:ENST00000263556.3	protein_coding	protein_coding	protein_coding	protein_coding	21	234	2	2.04081	2.213425	2.38604	6.18635e-4	5.13227e-4	0.0229151	0.0203753
chr1	40390055	40390155	81607	0	+	0.44	(0.408,0.44]	chr1	10553	150	INTRON	INTRON	SMAP2	ENSG00000084070.12	ENST00000435168.6:ENST00000372718.8:ENST00000372708.5	protein_coding	protein_coding	protein_coding	protein_coding	7	76	2	1.8937	2.213415	2.53313	0.00928733	0.00739595	0.0855292	0.074277
chr1	179867428	179867526	593364	0	-	0.377551	(0.35,0.378]	chr1	71112	12	INTRON	INTRON	TOR1AIP2	ENSG00000169905.13	ENST00000367612.7:ENST00000609928.6:ENST00000482587.5:ENST00000495650.1	protein_coding	protein_coding	protein_coding	protein_coding	7	67	2	1.38867	2.213405	3.03814	0.0441117	0.00767003	0.162255	0.075364
chr1	205615061	205615160	623330	0	-	0.393939	(0.378,0.408]	chr1	74129	73	UTR3	UTR3:EXON_MRNA:INTRON	ELK4	ENSG00000158711.14	ENST00000616704.4:ENST00000357992.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	86	2	1.98888	2.213325	2.43777	0.0205239	0.00144299	0.110999	0.034834
chr6	26283848	26283945	3071126	0	-	0.515464	(0.515,0.57]	chr6	285471	19	INTRON	INTRON	H4C8	ENSG00000158406.6	ENST00000634956.1:ENST00000634560.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	5	52	2	1.7492	2.213265	2.67733	0.0382504	0.00366712	0.15832	0.0535094
chr7	157221766	157221865	3454788	0	+	0.333333	(0.32,0.35]	chr7	322986	11	EXON_MRNA	EXON_MRNA:INTRON	UBE3C	ENSG00000009335.18	ENST00000348165.10:ENST00000470408.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	80	2	1.46414	2.2132300000000003	2.96232	0.065059	0.00118924	0.179599	0.031662
chr7	87852519	87852618	3566134	0	-	0.414141	(0.408,0.44]	chr7	332310	22	INTRON	INTRON	SLC25A40	ENSG00000075303.13	ENST00000341119.10:ENST00000429674.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	94	2	2.00842	2.21319	2.41796	0.0108512	0.0015483	0.0873034	0.0363194
chr5	141595937	141596036	2739958	0	-	0.50505	(0.476,0.515]	chr5	258168	73	INTRON	INTRON	DIAPH1	ENSG00000131504.18	ENST00000647433.1:ENST00000389054.8:ENST00000518047.5:ENST00000523100.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	91	2	1.80755	2.21313	2.61871	0.0131326	0.00174257	0.0999551	0.0375363
chr12	79917408	79917507	5376358	0	-	0.484848	(0.476,0.515]	chr12	512797	36	INTRON	INTRON	PPP1R12A	ENSG00000058272.19	ENST00000261207.9:ENST00000450142.7:ENST00000437004.6:ENST00000550107.5:ENST00000547330.5:ENST00000550510.5	protein_coding	protein_coding	protein_coding	protein_coding	6	56	2	1.48272	2.21311	2.9435	0.0410274	0.00929849	0.161534	0.0817766
chr5	75361825	75361924	2391112	0	+	0.363636	(0.35,0.378]	chr5	230991	16	UTR3	UTR3:EXON_MRNA	HMGCR	ENSG00000113161.17	ENST00000679456.1:ENST00000680160.1:ENST00000287936.9:ENST00000681567.1:ENST00000680940.1:ENST00000681271.1:ENST00000681410.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	48	2	1.82281	2.21311	2.60341	0.0316938	0.0275785	0.144635	0.123904
chr1	176115424	176115524	590785	0	-	0.54	(0.515,0.57]	chr1	70920	292	INTRON	INTRON	COP1	ENSG00000143207.21	ENST00000367669.8:ENST00000367667.5:ENST00000367666.5:ENST00000649803.1:ENST00000308769.12:ENST00000459744.5:ENST00000498306.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	51	2	1.97035	2.2131	2.45585	0.0195832	0.00797827	0.109483	0.0798772
chr2	111486332	111486431	1211724	0	-	0.434343	(0.408,0.44]	chr2	128939	59	INTRON	INTRON	MIR4435-2HG	ENSG00000172965.17	ENST00000645030.2:ENST00000642191.1:ENST00000673798.1:ENST00000645051.2:ENST00000673649.1:ENST00000669658.1:ENST00000669917.1:ENST00000661559.1:ENST00000653687.1:ENST00000667670.1:ENST00000609220.2:ENST00000656760.1:ENST00000609902.6:ENST00000666683.1:ENST00000674070.1:ENST00000662335.1:ENST00000664422.1:ENST00000673775.1:ENST00000674092.1:ENST00000673958.1:ENST00000658936.1:ENST00000662635.1:ENST00000666204.1:ENST00000659458.1:ENST00000664443.1:ENST00000670295.1:ENST00000661655.1:ENST00000666390.1:ENST00000659079.1:ENST00000660442.1:ENST00000664009.1:ENST00000439362.6:ENST00000654473.1:ENST00000664999.1:ENST00000673728.1:ENST00000659791.1:ENST00000666144.1:ENST00000659933.1:ENST00000670715.1:ENST00000653568.1:ENST00000643013.1:ENST00000673866.1:ENST00000443467.6:ENST00000669875.1:ENST00000673653.1:ENST00000673988.1:ENST00000661945.1:ENST00000669515.1:ENST00000431385.6:ENST00000656416.1:ENST00000674037.1:ENST00000432818.5:ENST00000674013.1:ENST00000444301.5:ENST00000673964.1:ENST00000673845.1:ENST00000673756.1:ENST00000673960.1:ENST00000673804.1:ENST00000673632.1:ENST00000453478.2:ENST00000673937.1:ENST00000673654.1:ENST00000409569.2:ENST00000674087.1:ENST00000419736.5:ENST00000673840.1:ENST00000674045.1:ENST00000643766.1:ENST00000308604.5:ENST00000604981.5:ENST00000673894.1:ENST00000441075.1:ENST00000673878.1	lncRNA	lncRNA	lncRNA	lncRNA	7	88	2	1.6546400000000001	2.2130900000000002	2.77154	0.0329965	9.14134e-4	0.145298	0.0278396
chr5	133958523	133958617	2725617	0	-	0.382979	(0.378,0.408]	chr5	256401	12	INTRON	INTRON	C5orf15	ENSG00000113583.8	ENST00000231512.5	protein_coding	protein_coding	protein_coding	protein_coding	9	74	2	1.27711	2.213015	3.14892	0.0441401	0.00499984	0.162255	0.0617433
chr3	140964924	140965023	1523184	0	+	0.292929	(0.28,0.32]	chr3	158669	18	UTR3	UTR3:EXON_MRNA:INTRON	SLC25A36	ENSG00000114120.14	ENST00000446041.6:ENST00000324194.12:ENST00000648615.1:ENST00000393015.8:ENST00000507429.5:ENST00000502594.5:ENST00000453248.6:ENST00000631654.1:ENST00000513887.5:ENST00000512023.5:ENST00000512506.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	107	2	1.9021	2.21292	2.52374	0.0304779	0.00122848	0.130699	0.0325799
chr15	22501048	22501148	5974577	0	+	0.34	(0.32,0.35]	chr15	568077	50	INTRON	INTRON	HERC2P2	ENSG00000276550.5	ENST00000613386.4	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	6	84	2	1.8903	2.212815	2.53533	0.0298043	0.00233994	0.129138	0.0442989
chr19	46884500	46884600	7082470	0	+	0.49	(0.476,0.515]	chr19	708677	229	INTRON	INTRON	ARHGAP35	ENSG00000160007.19	ENST00000672722.1	protein_coding	protein_coding	protein_coding	protein_coding	4	45	2	2.01953	2.2128050000000004	2.40608	0.0425709	0.0163662	0.148082	0.109586
chr3	143005544	143005643	1529112	0	+	0.40404	(0.378,0.408]	chr3	159324	28	INTRON	INTRON	U2SURP	ENSG00000163714.18	ENST00000600150.5:ENST00000488497.7:ENST00000493782.5:ENST00000473835.7:ENST00000461591.5:ENST00000493598.6:ENST00000463563.6:ENST00000470400.5:ENST00000465175.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	54	2	1.89052	2.2127749999999997	2.53503	0.0319942	0.0148147	0.13174	0.106702
chr7	138461502	138461602	3434653	0	+	0.36	(0.35,0.378]	chr7	319958	2	SS5_PROX	SS5_PROX:INTRON	TRIM24	ENSG00000122779.18	ENST00000343526.9:ENST00000415680.6:ENST00000497516.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	74	2	1.9392	2.212715	2.48623	0.0126486	0.00938784	0.0982897	0.0817766
chr3	47641471	47641570	1683644	0	-	0.313131	(0.28,0.32]	chr3	171996	23	INTRON	INTRON	SMARCC1	ENSG00000173473.11	ENST00000254480.10:ENST00000425518.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	77	2	1.85772	2.212685	2.56765	0.0300199	0.00835086	0.142135	0.0774402
chr1	16636167	16636267	383742	0	-	0.48	(0.476,0.515]	chr1	45226	6	INTRON	INTRON	CROCCP2	ENSG00000215908.10	ENST00000639456.1:ENST00000412962.4:ENST00000635081.1:ENST00000362058.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	7	82	2	2.09066	2.21263	2.3346	0.00772252	0.00494807	0.0756858	0.0646039
chr15	28275703	28275802	6123596	0	-	0.494949	(0.476,0.515]	chr15	583381	3	INTRON	INTRON	HERC2	ENSG00000128731.18	ENST00000261609.13:ENST00000564734.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	71	2	1.97402	2.212545	2.45107	0.0206778	0.00301722	0.110999	0.0507519
chr16	16564894	16564994	6311511	0	+	0.5	(0.476,0.515]	chr16	604098	649	INTRON	INTRON	ENSG00000260126	ENSG00000260126.2	ENST00000567465.2	lncRNA	lncRNA	lncRNA	lncRNA	6	71	2	2.17347	2.212425	2.25138	0.010447	0.00692374	0.0855102	0.0753208
chr7	23419821	23419921	3503159	0	-	0.4	(0.378,0.408]	chr7	326906	6	INTRON	INTRON	IGF2BP3	ENSG00000136231.14	ENST00000258729.8:ENST00000421467.6:ENST00000468263.5:ENST00000479504.5:ENST00000466809.6:ENST00000491719.5:ENST00000465058.5:ENST00000469723.5:ENST00000476938.5:ENST00000468005.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	85	2	1.85455	2.212385	2.57022	0.0192049	0.00179058	0.108861	0.0392749
chr1	89845780	89845879	159773	0	+	0.484848	(0.476,0.515]	chr1	17281	16	INTRON	INTRON	LRRC8D	ENSG00000171492.14	ENST00000525774.5:ENST00000337338.9:ENST00000394593.7:ENST00000532201.5:ENST00000414841.1:ENST00000527156.1	protein_coding	protein_coding	protein_coding	protein_coding	14	158	2	1.70551	2.21236	2.71921	0.00988238	8.08724e-5	0.0838372	0.00751718
chr7	24849869	24849966	3504508	0	-	0.484536	(0.476,0.515]	chr7	327053	3	INTRON	INTRON	OSBPL3	ENSG00000070882.13	ENST00000313367.7:ENST00000409863.5:ENST00000396431.5:ENST00000409452.5:ENST00000409759.5:ENST00000409555.5:ENST00000396429.5:ENST00000409069.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	68	2	1.68907	2.212355	2.73564	0.0296007	0.00333144	0.142135	0.0512081
chr3	179353026	179353125	1566982	0	+	0.50505	(0.476,0.515]	chr3	162075	6	INTRON	INTRON	MFN1	ENSG00000171109.19	ENST00000471841.6:ENST00000357390.8:ENST00000467174.6:ENST00000263969.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	59	2	2.20789	2.2123299999999997	2.21677	0.0207026	0.00820497	0.110999	0.081115
chr3	195937964	195938064	1896479	0	-	0.41	(0.408,0.44]	chr3	189770	134	INTRON	INTRON	ENSG00000260261	ENSG00000260261.2	ENST00000607976.2:ENST00000641484.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	4	52	2	1.93243	2.2123049999999997	2.49218	0.0441194	0.00855168	0.162255	0.0780217
chr16	8044423	8044523	6440953	0	-	0.42	(0.408,0.44]	chr16	620351	368	INTRON	INTRON	ENSG00000260289	ENSG00000260289.2	ENST00000670665.1:ENST00000654046.1:ENST00000567103.2	lncRNA	lncRNA	lncRNA	lncRNA	4	45	2	1.53263	2.21228	2.89193	0.0733439	0.00950364	0.190051	0.0863579
chr21	34089282	34089382	7401250	0	+	0.42	(0.408,0.44]	chr21	753967	152	INTRON	INTRON	MRPS6:SLC5A3	ENSG00000243927.6:ENSG00000198743.7	ENST00000488492.5:ENST00000477091.5:ENST00000399312.3:ENST00000381151.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	45	2	1.53263	2.21228	2.89193	0.0733439	0.00950364	0.190051	0.0863579
chr8	129472659	129472759	4060001	0	-	0.26	[0,0.28]	chr8	369602	154	INTRON	INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1:ENST00000676273.1:ENST00000667643.1:ENST00000668791.1:ENST00000663716.1:ENST00000663572.1:ENST00000676148.1:ENST00000667962.1:ENST00000674877.1:ENST00000675316.1:ENST00000674656.1:ENST00000446592.7:ENST00000667341.1:ENST00000675186.1:ENST00000652971.1:ENST00000661447.1:ENST00000674863.1:ENST00000675498.1:ENST00000675527.1:ENST00000676108.1:ENST00000657647.1:ENST00000675589.1:ENST00000675913.1:ENST00000675109.1:ENST00000671632.1:ENST00000671311.1:ENST00000676099.1:ENST00000660652.1:ENST00000675522.1:ENST00000675183.1:ENST00000658861.1:ENST00000663991.1:ENST00000675044.1:ENST00000675435.1:ENST00000674639.1:ENST00000676069.1:ENST00000675532.1:ENST00000674762.1:ENST00000523151.6:ENST00000675948.1:ENST00000665364.1:ENST00000657251.1:ENST00000675166.1:ENST00000674883.1:ENST00000675867.1:ENST00000674580.1:ENST00000675393.1:ENST00000520048.1:ENST00000674906.1:ENST00000676030.1:ENST00000670588.1:ENST00000675072.1:ENST00000664936.1:ENST00000652914.1:ENST00000657069.1	lncRNA	lncRNA	lncRNA	lncRNA	4	72	2	2.1357	2.212275	2.28885	0.0338175	0.0181093	0.134476	0.114853
chr1	100115642	100115741	515685	0	-	0.464646	(0.44,0.476]	chr1	60466	48	INTRON	INTRON	SASS6	ENSG00000156876.10	ENST00000462159.1:ENST00000287482.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	56	2	1.44993	2.21222	2.97451	0.045367	0.00853825	0.164236	0.0780043
chr3	52704291	52704359	1700895	0	-	0.514706	(0.476,0.515]	chr3	175134	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GLT8D1	ENSG00000016864.19	ENST00000266014.11:ENST00000478968.6:ENST00000491606.5:ENST00000484163.5:ENST00000497436.5:ENST00000497953.5:ENST00000487642.5:ENST00000464705.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	49	2	1.99197	2.212195	2.43242	0.039572	0.0091895	0.143072	0.0855292
chr8	41705546	41705642	3938126	0	-	0.5	(0.476,0.515]	chr8	361031	7	INTRON	INTRON	ANK1	ENSG00000029534.21	ENST00000347528.8:ENST00000265709.13:ENST00000289734.13:ENST00000520299.5	protein_coding	protein_coding	protein_coding	protein_coding	4	49	2	1.99197	2.212195	2.43242	0.039572	0.0091895	0.143072	0.0855292
chr1	173888513	173888613	256951	0	+	0.43	(0.408,0.44]	chr1	30716	25	UTR3	UTR3:EXON_MRNA	ZBTB37	ENSG00000185278.16	ENST00000367701.10	protein_coding	protein_coding	protein_coding	protein_coding	3	37	2	2.14732	2.2121500000000003	2.27698	0.0583528	0.0237354	0.167723	0.129075
chr15	25416537	25416635	6121614	0	-	0.418367	(0.408,0.44]	chr15	582921	3	INTRON	INTRON	UBE3A	ENSG00000114062.22	ENST00000648336.2:ENST00000438097.6:ENST00000635914.1:ENST00000638155.1:ENST00000637886.1:ENST00000638011.1:ENST00000649550.1:ENST00000650110.1:ENST00000630424.2:ENST00000566215.5:ENST00000428984.6:ENST00000675177.1:ENST00000675593.1:ENST00000625778.3:ENST00000675000.1:ENST00000626793.2:ENST00000628733.2:ENST00000630907.2:ENST00000675038.1:ENST00000629886.2:ENST00000628267.2:ENST00000629252.2:ENST00000625681.2:ENST00000626589.2:ENST00000627018.1:ENST00000676452.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	37	2	2.14732	2.2121500000000003	2.27698	0.0583528	0.0237354	0.167723	0.129075
chr18	9591310	9591407	6946081	0	-	0.43299	(0.408,0.44]	chr18	687020	21	INTRON	INTRON	PPP4R1	ENSG00000154845.16	ENST00000400555.7:ENST00000400556.8:ENST00000285124.12:ENST00000580583.5:ENST00000578875.5:ENST00000578178.5:ENST00000583903.5:ENST00000579638.5:ENST00000584074.5:ENST00000579415.5:ENST00000581250.5:ENST00000580745.5:ENST00000582933.5:ENST00000580182.5:ENST00000582240.5:ENST00000581835.1:ENST00000583092.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	37	2	2.14732	2.2121500000000003	2.27698	0.0583528	0.0237354	0.167723	0.129075
chr7	128612270	128612370	3408172	0	+	0.43	(0.408,0.44]	chr7	318376	23	INTRON	INTRON	ENSG00000280828:ENSG00000242588	ENSG00000280828.1:ENSG00000242588.6	ENST00000479267.2:ENST00000605862.5	lncRNA	lncRNA	lncRNA:unprocessed_pseudogene	lncRNA:unprocessed_pseudogene	3	37	2	2.14732	2.2121500000000003	2.27698	0.0583528	0.0237354	0.167723	0.129075
chr15	58740363	58740463	6193422	0	-	0.4	(0.378,0.408]	chr15	589988	223	INTRON	INTRON	ADAM10	ENSG00000137845.15	ENST00000260408.8:ENST00000402627.5:ENST00000561288.1:ENST00000559053.1:ENST00000558733.5:ENST00000439637.5:ENST00000497846.5:ENST00000558004.1:ENST00000560608.5:ENST00000561149.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	95	2	1.55037	2.21213	2.87389	0.0365151	4.01435e-4	0.138959	0.0179994
chr17	41986362	41986461	6770544	0	-	0.444444	(0.44,0.476]	chr17	666612	4	INTRON	INTRON	DNAJC7	ENSG00000168259.17	ENST00000316603.12:ENST00000457167.9:ENST00000586335.2:ENST00000674306.1:ENST00000426588.7:ENST00000674355.1:ENST00000674504.1:ENST00000674472.1:ENST00000674233.1:ENST00000674166.1:ENST00000674179.1:ENST00000674481.1:ENST00000674249.1:ENST00000585866.6:ENST00000589576.6:ENST00000674214.1:ENST00000588814.5:ENST00000590774.6:ENST00000674303.1:ENST00000674453.1:ENST00000674252.1:ENST00000674287.1:ENST00000674497.1:ENST00000674411.1:ENST00000585693.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	76	2	1.30125	2.212115	3.12298	0.0734119	4.66209e-4	0.190171	0.0195589
chr13	83028324	83028424	5633530	0	-	0.31	(0.28,0.32]	chr13	536804	2494	INTRON	INTRON	ENSG00000286385	ENSG00000286385.1	ENST00000663739.1	lncRNA	lncRNA	lncRNA	lncRNA	3	48	2	1.96376	2.21197	2.46018	0.0480066	0.0375904	0.156054	0.153019
chrX	71291389	71291486	7678079	0	+	0.298969	(0.28,0.32]	chrX	786079	7	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	NONO	ENSG00000147140.17	ENST00000677446.1:ENST00000677274.1:ENST00000535149.5:ENST00000420903.6:ENST00000678335.1:ENST00000678830.1:ENST00000677826.1:ENST00000473525.2:ENST00000678437.1:ENST00000676499.1:ENST00000676495.1:ENST00000678323.1:ENST00000677766.1:ENST00000679267.1:ENST00000373856.8:ENST00000679254.1:ENST00000677879.1:ENST00000677245.1:ENST00000373841.5:ENST00000276079.13:ENST00000679029.1:ENST00000677218.1:ENST00000676797.1:ENST00000679062.1:ENST00000678660.1:ENST00000677014.1:ENST00000678231.1:ENST00000474431.5:ENST00000677612.1:ENST00000677977.1:ENST00000471419.7:ENST00000472185.1:ENST00000413858.5:ENST00000486613.6:ENST00000450092.6:ENST00000454976.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	48	2	1.96376	2.21197	2.46018	0.0480066	0.0375904	0.156054	0.153019
chr16	21445881	21445981	6460774	0	-	0.4	(0.378,0.408]	chr16	623226	53	INTRON	INTRON	NPIPB3	ENSG00000169246.16	ENST00000545358.5:ENST00000543368.1:ENST00000544154.1	protein_coding	retained_intron	protein_coding	retained_intron:processed_transcript	11	127	2	1.95974	2.21195	2.46416	0.0034794	0.00175593	0.0541004	0.0376652
chr1	45659883	45659983	440320	0	-	0.51	(0.476,0.515]	chr1	53356	3	SS5_PROX	SS5_PROX:INTRON	GPBP1L1	ENSG00000159592.11	ENST00000290795.7:ENST00000355105.8:ENST00000495616.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	50	2	1.48023	2.211865	2.9435	0.0559072	0.00929849	0.18407	0.0817766
chr8	94866453	94866546	3800574	0	+	0.462366	(0.44,0.476]	chr8	352434	1	SS5_PROX	SS5_PROX:INTRON	INTS8	ENSG00000164941.14	ENST00000523731.6:ENST00000524333.5:ENST00000343161.8:ENST00000523206.5:ENST00000520526.5:ENST00000520845.5:ENST00000520315.5:ENST00000517918.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	44	2	1.81595	2.2118450000000003	2.60774	0.0317953	0.0255874	0.14477	0.120269
chr16	2503545	2503644	6278593	0	+	0.424242	(0.408,0.44]	chr16	600536	27	UTR3	UTR3:EXON_MRNA	TBC1D24	ENSG00000162065.14	ENST00000567020.6:ENST00000646147.1:ENST00000564879.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	13	146	2	1.94811	2.21182	2.47553	0.00268797	8.63273e-4	0.0479115	0.0268312
chr7	105351457	105351557	3603531	0	-	0.46	(0.44,0.476]	chr7	336161	445	INTRON	INTRON	SRPK2	ENSG00000135250.17	ENST00000393651.8:ENST00000482897.5:ENST00000460391.5:ENST00000462282.5:ENST00000465112.5:ENST00000482862.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	53	2	1.60467	2.211815	2.81896	0.0411383	0.0120766	0.1451	0.0962311
chr5	6373371	6373462	2566361	0	-	0.373626	(0.35,0.378]	chr5	245853	4	INTRON	INTRON	MED10	ENSG00000133398.4	ENST00000255764.4:ENST00000503112.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	49	2	2.02424	2.2118149999999996	2.39939	0.0458078	0.0164934	0.149888	0.110301
chr8	126268102	126268202	4051313	0	-	0.3	(0.28,0.32]	chr8	369353	1547	INTRON	INTRON	LINC00861	ENSG00000245164.9	ENST00000651482.1	lncRNA	lncRNA	lncRNA	lncRNA	4	58	2	1.68409	2.21177	2.73945	0.0548665	0.017681	0.165463	0.11319
chr19	10681707	10681802	7013503	0	+	0.421053	(0.408,0.44]	chr19	696814	5	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ILF3	ENSG00000129351.17	ENST00000449870.5:ENST00000587928.5:ENST00000407004.7:ENST00000589998.5:ENST00000250241.12:ENST00000590261.5:ENST00000588657.5:ENST00000592763.5:ENST00000585835.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	147	2	1.86022	2.21175	2.56328	0.00412101	5.57055e-4	0.0586502	0.0217755
chr17	80909241	80909335	6688457	0	+	0.489362	(0.476,0.515]	chr17	653530	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPTOR	ENSG00000141564.15	ENST00000577161.5:ENST00000306801.8:ENST00000544334.6:ENST00000575542.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	45	2	1.69138	2.211715	2.73205	0.0481165	0.0159328	0.153019	0.109464
chr1	243254539	243254639	668714	0	-	0.59	(0.57,1]	chr1	79334	1	SS5_PROX	SS5_PROX:INTRON	CEP170	ENSG00000143702.16	ENST00000366544.5:ENST00000366543.5:ENST00000366542.6:ENST00000522522.5:ENST00000522995.1:ENST00000523581.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	55	2	1.76082	2.211655	2.66249	0.00761391	9.0016e-4	0.0776172	0.0277303
chr1	15570350	15570448	33252	0	+	0.408163	(0.378,0.408]	chr1	4063	23	UTR3	UTR3:EXON_MRNA:INTRON	DNAJC16	ENSG00000116138.13	ENST00000375849.5:ENST00000475133.5:ENST00000616884.4:ENST00000375847.8:ENST00000483270.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	40	2	2.05897	2.2116249999999997	2.36428	0.0441088	0.0339294	0.162255	0.134508
chr7	4692862	4692962	3270021	0	+	0.43	(0.408,0.44]	chr7	303884	96	INTRON	INTRON	FOXK1	ENSG00000164916.11	ENST00000328914.5	protein_coding	protein_coding	protein_coding	protein_coding	5	60	2	1.92319	2.21151	2.49983	0.0247322	0.00713527	0.12011	0.0756118
chr7	155675511	155675611	3452205	0	+	0.44	(0.408,0.44]	chr7	322654	22	INTRON	INTRON	RBM33	ENSG00000184863.11	ENST00000287912.7:ENST00000401878.8:ENST00000392759.7:ENST00000307403.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	45	2	1.9831	2.21149	2.43988	0.0398236	0.018491	0.143072	0.116694
chr3	177181991	177182090	1872294	0	-	0.444444	(0.44,0.476]	chr3	187438	107	INTRON	INTRON	TBL1XR1	ENSG00000177565.18	ENST00000457928.7:ENST00000430069.5:ENST00000673974.1:ENST00000352800.10:ENST00000422442.6:ENST00000428970.5:ENST00000424913.5:ENST00000437738.5:ENST00000431421.5:ENST00000635794.1:ENST00000630796.2:ENST00000450267.5:ENST00000630833.2:ENST00000431674.5:ENST00000422066.5:ENST00000443315.5:ENST00000627825.2:ENST00000427349.5:ENST00000413084.5:ENST00000637137.1:ENST00000491623.2:ENST00000637544.1:ENST00000636187.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	10	117	2	2.11598	2.211435	2.30689	0.0035604	0.00187835	0.0548355	0.039073
chr3	152307442	152307542	1535373	0	+	0.26	[0,0.28]	chr3	159996	51	INTRON	INTRON	MBNL1	ENSG00000152601.18	ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000495875.6:ENST00000324210.10:ENST00000493459.5:ENST00000459747.1:ENST00000460591.5:ENST00000545754.5:ENST00000357472.7:ENST00000324196.9:ENST00000498502.5:ENST00000463374.5:ENST00000485910.5:ENST00000465907.6:ENST00000492948.5:ENST00000485509.5:ENST00000464596.5	protein_coding	protein_coding	protein_coding	protein_coding	15	177	2	1.2476	2.21127	3.17494	0.0358581	0.00114737	0.152277	0.0308663
chr15	30652110	30652209	5992539	0	+	0.484848	(0.476,0.515]	chr15	569759	27	INTRON	INTRON	ENSG00000284906:ENSG00000285035	ENSG00000284906.3:ENSG00000285035.2	ENST00000685924.1:ENST00000563110.6:ENST00000642399.2:ENST00000566548.5	protein_coding	protein_coding	protein_coding:transcribed_unprocessed_pseudogene	protein_coding:nonsense_mediated_decay:processed_transcript:transcribed_unprocessed_pseudogene	14	153	2	1.79004	2.2112600000000002	2.63248	0.00461301	3.62327e-4	0.0626267	0.0176176
chr7	116912737	116912834	3385878	0	+	0.28866000000000003	(0.28,0.32]	chr7	317087	2	INTRON	INTRON	CAPZA2	ENSG00000198898.15	ENST00000361183.8:ENST00000449080.5:ENST00000426421.5:ENST00000465607.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	57	2	2.02902	2.211245	2.39347	0.0504457	0.0174423	0.156383	0.11269
chr22	16788399	16788499	7546283	0	-	0.29	(0.28,0.32]	chr22	771315	36	INTRON	INTRON	XKR3	ENSG00000172967.8	ENST00000331428.5:ENST00000684488.1	protein_coding	protein_coding	protein_coding	protein_coding	3	47	2	1.81582	2.21119	2.60656	0.068122	0.0256827	0.184298	0.133676
chr6	140213966	140214066	2968595	0	+	0.32	(0.28,0.32]	chr6	279015	649	INTRON	INTRON	ENSG00000288714	ENSG00000288714.1	ENST00000683950.1	lncRNA	lncRNA	lncRNA	lncRNA	3	47	2	1.81582	2.21119	2.60656	0.068122	0.0256827	0.184298	0.133676
chr7	101887823	101887923	3367067	0	+	0.35	(0.32,0.35]	chr7	315215	685	INTRON	INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000497815.5:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000607092.1:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000558469.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	52	2	1.97654	2.21117	2.4458	0.0425977	0.0199113	0.148082	0.120668
chr6	89818107	89818207	3162023	0	-	0.49	(0.476,0.515]	chr6	294886	142	INTRON	INTRON	MDN1	ENSG00000112159.12	ENST00000369393.8:ENST00000629399.2:ENST00000439638.1	protein_coding	protein_coding	protein_coding	protein_coding	10	108	2	1.48564	2.2111549999999998	2.93667	0.0251821	3.86734e-4	0.133519	0.0182867
chr19	11816622	11816718	7018925	0	+	0.5	(0.476,0.515]	chr19	697798	7	EXON_MRNA	EXON_MRNA:INTRON	ZNF440	ENSG00000171295.13	ENST00000304060.10:ENST00000457526.1:ENST00000427505.5:ENST00000588954.5:ENST00000587795.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	94	2	2.10798	2.2111099999999997	2.31424	0.00628634	0.00308038	0.0722266	0.0496438
chr9	4809284	4809384	4095029	0	+	0.43	(0.408,0.44]	chr9	373155	157	INTRON	INTRON	RCL1	ENSG00000120158.12	ENST00000381750.9:ENST00000381732.3:ENST00000442869.5:ENST00000473230.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	60	2	1.93002	2.2111	2.49218	0.022095	0.00855168	0.123903	0.0780217
chr22	21447529	21447628	7481478	0	+	0.555556	(0.515,0.57]	chr22	763220	9	UTR3	UTR3:EXON_MRNA	HIC2	ENSG00000169635.10	ENST00000407464.7:ENST00000407598.2:ENST00000443632.2	protein_coding	protein_coding	protein_coding	protein_coding	10	92	2	1.52078	2.210945	2.90111	0.0211248	3.57078e-4	0.122921	0.0175154
chr3	42622016	42622115	1406192	0	+	0.353535	(0.35,0.378]	chr3	147675	1	INTRON	INTRON	NKTR	ENSG00000114857.19	ENST00000468735.6:ENST00000487466.5:ENST00000429888.5:ENST00000232978.13:ENST00000478488.1:ENST00000465584.5:ENST00000466553.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	121	2	1.13507	2.21091	3.28675	0.0518195	3.6403e-4	0.176696	0.0176829
chr4	144014039	144014137	2251697	0	-	0.367347	(0.35,0.378]	chr4	219992	9	INTRON	INTRON	GYPB	ENSG00000250361.9	ENST00000502664.6:ENST00000506679.5:ENST00000429670.3:ENST00000507009.5:ENST00000513128.5:ENST00000505583.5:ENST00000506516.6:ENST00000513557.5:ENST00000513677.5:ENST00000511198.5:ENST00000504951.6:ENST00000510196.6:ENST00000503255.5:ENST00000638448.1:ENST00000508618.5:ENST00000508841.1:ENST00000642935.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	78	2	2.10109	2.2108499999999998	2.32061	0.014685	0.00545884	0.0983813	0.0669938
chr15	69454300	69454396	6059127	0	+	0.458333	(0.44,0.476]	chr15	576838	7	EXON_MRNA	EXON_MRNA:INTRON	RPLP1	ENSG00000137818.12	ENST00000357790.5:ENST00000260379.11:ENST00000487304.6:ENST00000560274.1:ENST00000488122.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	60	2	1.53117	2.21082	2.89047	0.0377545	0.00955699	0.140863	0.0863913
chr17	60338487	60338587	6805338	0	-	0.5	(0.476,0.515]	chr17	672360	334	INTRON	INTRON	USP32	ENSG00000170832.13	ENST00000300896.9:ENST00000590133.5:ENST00000589335.5:ENST00000393003.7:ENST00000588898.1:ENST00000589761.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	50	2	1.53534	2.21082	2.8863	0.0476737	0.0111679	0.170116	0.0877435
chr1	244689442	244689542	348075	0	+	0.3	(0.28,0.32]	chr1	40368	1	SS5_PROX	SS5_PROX:INTRON	DESI2	ENSG00000121644.19	ENST00000263831.11:ENST00000302550.16:ENST00000418162.1	protein_coding	protein_coding	protein_coding	protein_coding	4	63	2	2.18092	2.2107650000000003	2.24061	0.0271832	0.0194267	0.123904	0.119831
chr2	144495232	144495328	1241557	0	-	0.375	(0.35,0.378]	chr2	131733	11	EXON_MRNA	EXON_MRNA:INTRON	ZEB2:ENSG00000279166	ENSG00000169554.23:ENSG00000279166.1	ENST00000636471.1:ENST00000627532.3:ENST00000638128.1:ENST00000637304.1:ENST00000636179.1:ENST00000419938.5:ENST00000409487.7:ENST00000636732.2:ENST00000636026.2:ENST00000675069.1:ENST00000689298.1:ENST00000539609.7:ENST00000558170.6:ENST00000303660.8:ENST00000427902.5:ENST00000637267.2:ENST00000392861.6:ENST00000431672.4:ENST00000409211.5:ENST00000465308.5:ENST00000434448.5:ENST00000472146.5:ENST00000461784.3:ENST00000476394.5:ENST00000637591.2:ENST00000479735.1:ENST00000453352.5:ENST00000435831.5:ENST00000444559.5:ENST00000630572.2:ENST00000484313.3:ENST00000623674.1	protein_coding	protein_coding	protein_coding:TEC	protein_coding:retained_intron:nonsense_mediated_decay:TEC:processed_transcript	5	65	2	1.87726	2.210735	2.54421	0.0297629	0.00630238	0.12908	0.0722266
chr2	157279690	157279790	896738	0	+	0.51	(0.476,0.515]	chr2	99276	198	INTRON	INTRON	GALNT5	ENSG00000136542.9	ENST00000259056.5	protein_coding	protein_coding	protein_coding	protein_coding	8	93	2	2.08673	2.210665	2.3346	0.00494807	0.00486567	0.0646039	0.0607461
chr17	70119070	70119170	6828639	0	-	0.45	(0.44,0.476]	chr17	675009	459	INTRON	INTRON	ENSG00000230258	ENSG00000230258.6	ENST00000435112.5	lncRNA	lncRNA	lncRNA	lncRNA	5	52	2	1.88483	2.2106149999999998	2.5364	0.0309324	0.0149825	0.13151	0.107704
chr1	222705805	222705905	642262	0	-	0.49	(0.476,0.515]	chr1	75796	22	INTRON	INTRON	AIDA	ENSG00000186063.13	ENST00000474863.5:ENST00000340020.11:ENST00000355727.3:ENST00000470437.5:ENST00000497112.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	27	2	2.13854	2.21059	2.28264	0.0776563	0.0534132	0.196285	0.179876
chr10	7766795	7766891	4553117	0	-	0.510417	(0.476,0.515]	chr10	420311	3	INTRON	INTRON	KIN	ENSG00000151657.12	ENST00000379562.9:ENST00000460089.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	27	2	2.13854	2.21059	2.28264	0.0776563	0.0534132	0.196285	0.179876
chr16	85255362	85255462	6412382	0	+	0.48	(0.476,0.515]	chr16	615455	701	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	2	27	2	2.13854	2.21059	2.28264	0.0776563	0.0534132	0.196285	0.179876
chr17	59918079	59918178	6644021	0	+	0.50505	(0.476,0.515]	chr17	648827	30	INTRON	INTRON	RPS6KB1	ENSG00000108443.14	ENST00000393021.7:ENST00000472940.5:ENST00000225577.9:ENST00000443572.6:ENST00000489824.1:ENST00000406116.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	27	2	2.13854	2.21059	2.28264	0.0776563	0.0534132	0.196285	0.179876
chr19	58413447	58413545	7107784	0	+	0.489796	(0.476,0.515]	chr19	713473	30	INTRON	INTRON	ZNF584	ENSG00000171574.18	ENST00000596921.5:ENST00000594993.1:ENST00000306910.9:ENST00000598901.1:ENST00000593920.5:ENST00000596281.1:ENST00000599238.5:ENST00000322834.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	27	2	2.13854	2.21059	2.28264	0.0776563	0.0534132	0.196285	0.179876
chr21	9120070	9120169	7426540	0	-	0.515152	(0.476,0.515]	chr21	757579	318	INTRON	INTRON	TEKT4P2	ENSG00000188681.12	ENST00000690061.1:ENST00000689141.1:ENST00000688310.1:ENST00000687537.1:ENST00000690096.1:ENST00000687888.1:ENST00000690389.1:ENST00000684989.1:ENST00000416067.6:ENST00000693307.1:ENST00000692383.1:ENST00000685666.1:ENST00000688451.1:ENST00000691190.1:ENST00000685532.1:ENST00000687488.1:ENST00000690713.1:ENST00000691834.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	2	27	2	2.13854	2.21059	2.28264	0.0776563	0.0534132	0.196285	0.179876
chr9	36592437	36592537	4116669	0	+	0.48	(0.476,0.515]	chr9	375257	24	INTRON	INTRON	MELK	ENSG00000165304.8	ENST00000543751.5:ENST00000536860.5:ENST00000541717.4:ENST00000536329.5:ENST00000627766.2:ENST00000298048.7:ENST00000536987.5:ENST00000545008.5:ENST00000495529.5:ENST00000489766.5:ENST00000625974.2:ENST00000487398.3:ENST00000626154.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	27	2	2.13854	2.21059	2.28264	0.0776563	0.0534132	0.196285	0.179876
chr3	156552286	156552383	1844485	0	-	0.309278	(0.28,0.32]	chr3	185593	9	INTRON	INTRON	SSR3	ENSG00000114850.7	ENST00000265044.7:ENST00000467789.5:ENST00000476217.5:ENST00000463503.5:ENST00000496050.1:ENST00000467733.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	148	2	2.01853	2.2105750000000004	2.40262	0.0131536	7.45509e-4	0.0938857	0.0250079
chr17	32152798	32152898	6596922	0	+	0.46	(0.44,0.476]	chr17	641728	97	INTRON	INTRON	RHOT1	ENSG00000126858.19	ENST00000333942.10:ENST00000358365.7:ENST00000583994.5:ENST00000545287.7:ENST00000354266.7:ENST00000581031.5:ENST00000581094.5:ENST00000578205.5:ENST00000580976.1:ENST00000394692.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	60	2	1.55662	2.21057	2.86452	0.0688347	0.00159222	0.184298	0.0367961
chr10	133413114	133413213	4540410	0	+	0.464646	(0.44,0.476]	chr10	419095	100	INTRON	INTRON	MTG1	ENSG00000148824.19	ENST00000477902.6:ENST00000317502.11:ENST00000432508.3:ENST00000460848.5:ENST00000473735.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	104	2	1.75999	2.2105099999999998	2.66103	0.0176116	4.47456e-4	0.105143	0.0191768
chr2	26119470	26119570	713956	0	+	0.34	(0.32,0.35]	chr2	82453	92	INTRON	INTRON	RAB10	ENSG00000084733.11	ENST00000264710.5:ENST00000495146.5:ENST00000473035.1:ENST00000462003.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	58	2	2.19668	2.2104850000000003	2.22429	0.0226421	0.021398	0.123719	0.117557
chr5	151801761	151801859	2522126	0	+	0.336735	(0.32,0.35]	chr5	241366	5	INTRON	INTRON	G3BP1	ENSG00000145907.16	ENST00000678070.1:ENST00000678964.1:ENST00000678925.1:ENST00000394123.7:ENST00000676978.1:ENST00000679289.1:ENST00000677493.1:ENST00000676644.1:ENST00000677757.1:ENST00000522761.6:ENST00000676827.1:ENST00000520177.6:ENST00000676634.1:ENST00000678854.1:ENST00000676911.1:ENST00000356245.8:ENST00000678646.1:ENST00000677381.1:ENST00000678904.1:ENST00000678910.1:ENST00000678101.1:ENST00000677105.1:ENST00000678369.1:ENST00000678564.1:ENST00000677923.1:ENST00000677323.1:ENST00000677687.1:ENST00000679193.1:ENST00000678825.1:ENST00000678657.1:ENST00000676507.1:ENST00000678612.1:ENST00000676715.1:ENST00000676899.1:ENST00000677658.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	58	2	2.19668	2.2104850000000003	2.22429	0.0226421	0.021398	0.123719	0.117557
chr2	230715957	230716057	1030190	0	+	0.44	(0.408,0.44]	chr2	110002	15	INTRON	INTRON	CAB39	ENSG00000135932.12	ENST00000258418.10:ENST00000409788.7:ENST00000410084.7	protein_coding	protein_coding	protein_coding	protein_coding	6	68	2	1.92871	2.210445	2.49218	0.0127189	0.00855168	0.0986242	0.0780217
chr1	219202849	219202948	318670	0	+	0.454545	(0.44,0.476]	chr1	36461	37	INTRON	INTRON	LYPLAL1	ENSG00000143353.12	ENST00000460522.5:ENST00000366927.3:ENST00000366928.10:ENST00000477938.5:ENST00000463964.5:ENST00000483635.5:ENST00000474379.5:ENST00000469590.5:ENST00000478794.5:ENST00000475724.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	104	2	2.03443	2.210385	2.38634	0.00616397	0.0018045	0.067653	0.039301
chr4	126592699	126592799	2236636	0	-	0.36	(0.35,0.378]	chr4	219023	1272	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	4	54	2	2.19034	2.210385	2.23043	0.023941	0.0187487	0.119443	0.117523
chr8	38129742	38129840	3734925	0	+	0.408163	(0.378,0.408]	chr8	347014	4	INTRON	INTRON	ASH2L	ENSG00000129691.16	ENST00000545394.2:ENST00000343823.11:ENST00000517496.5:ENST00000428278.6:ENST00000521652.5:ENST00000524247.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	38	2	2.11103	2.2103200000000003	2.30961	0.055088	0.0266911	0.165463	0.134419
chr8	60576994	60577093	3758409	0	+	0.393939	(0.378,0.408]	chr8	349522	3	INTRON	INTRON	RAB2A	ENSG00000104388.15	ENST00000531289.5:ENST00000262646.12:ENST00000529579.5:ENST00000466595.5:ENST00000429861.5:ENST00000534260.5:ENST00000525529.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	38	2	2.11103	2.2103200000000003	2.30961	0.055088	0.0266911	0.165463	0.134419
chr1	108961666	108961758	519162	0	-	0.532609	(0.515,0.57]	chr1	60935	5	EXON_MRNA	EXON_MRNA:INTRON	CLCC1	ENSG00000121940.17	ENST00000690509.1:ENST00000687328.1:ENST00000685014.1:ENST00000685540.1:ENST00000686576.1:ENST00000688070.1:ENST00000691513.1:ENST00000686821.1:ENST00000692511.1:ENST00000689479.1:ENST00000687646.1:ENST00000687998.1:ENST00000687226.1:ENST00000693336.1:ENST00000689991.1:ENST00000687591.1:ENST00000691777.1:ENST00000690756.1:ENST00000688778.1:ENST00000685104.1:ENST00000689103.1:ENST00000687734.1:ENST00000686434.1:ENST00000685497.1:ENST00000691342.1:ENST00000686776.1:ENST00000692342.1:ENST00000689351.1:ENST00000692584.1:ENST00000692775.1:ENST00000687134.1:ENST00000675018.1:ENST00000690781.1:ENST00000691556.1:ENST00000689189.1:ENST00000687099.1:ENST00000685791.1:ENST00000687865.1:ENST00000687449.1:ENST00000688285.1:ENST00000369968.7:ENST00000674992.1:ENST00000675001.1:ENST00000369969.7:ENST00000356970.6:ENST00000688610.1:ENST00000675128.1:ENST00000693089.1:ENST00000675571.1:ENST00000675650.1:ENST00000369970.8:ENST00000674561.2:ENST00000675654.1:ENST00000675790.1:ENST00000675584.1:ENST00000692795.1:ENST00000691731.1:ENST00000689359.1:ENST00000676392.2:ENST00000676391.2:ENST00000676454.1:ENST00000674849.1:ENST00000675956.1:ENST00000302500.5:ENST00000675508.1:ENST00000688168.1:ENST00000693673.1:ENST00000692404.1:ENST00000686078.1:ENST00000690874.1:ENST00000692732.1:ENST00000685628.1:ENST00000676306.1:ENST00000676059.2:ENST00000674527.1:ENST00000691876.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	78	2	1.77888	2.210295	2.64171	0.0139834	0.00130576	0.10247	0.0331539
chr15	28598076	28598176	5987995	0	+	0.25	[0,0.28]	chr15	569248	40	INTRON	INTRON	HERC2P9	ENSG00000206149.11	ENST00000689985.1:ENST00000688694.1:ENST00000529537.2:ENST00000529624.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	3	55	2	1.98291	2.21026	2.43761	0.0494143	0.0423864	0.161744	0.156195
chr9	71727972	71728070	4264737	0	-	0.561224	(0.515,0.57]	chr9	392516	19	INTRON	INTRON	CEMIP2	ENSG00000135048.14	ENST00000377044.9:ENST00000377066.9:ENST00000542935.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	63	2	1.69407	2.210245	2.72642	0.0459452	7.31116e-4	0.149888	0.0246497
chr10	21543055	21543154	4404497	0	+	0.454545	(0.44,0.476]	chr10	406427	13	INTRON	INTRON	MLLT10	ENSG00000078403.17	ENST00000651097.1:ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000377100.8:ENST00000377091.7:ENST00000650772.1:ENST00000651298.1:ENST00000652497.1:ENST00000495130.5:ENST00000377059.7:ENST00000621220.4:ENST00000476557.5:ENST00000462999.5:ENST00000430455.2:ENST00000479634.1:ENST00000480415.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	60	2	2.03034	2.210185	2.39003	0.0173569	0.0106488	0.104189	0.0915714
chr14	101821581	101821677	5819101	0	+	0.385417	(0.378,0.408]	chr14	551847	6	INTRON	INTRON	PPP2R5C	ENSG00000078304.20	ENST00000694906.1:ENST00000422945.6:ENST00000554442.5:ENST00000328724.9:ENST00000554504.1:ENST00000553890.1:ENST00000350249.7:ENST00000557621.5:ENST00000556946.1:ENST00000556307.5:ENST00000553730.5:ENST00000557714.1:ENST00000334743.9:ENST00000445439.7:ENST00000557095.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	58	2	1.36527	2.210145	3.05502	0.0587392	0.00689519	0.189982	0.0717484
chr1	89839857	89839957	159712	0	+	0.33	(0.32,0.35]	chr1	17274	57	INTRON	INTRON	LRRC8D	ENSG00000171492.14	ENST00000525774.5:ENST00000337338.9:ENST00000394593.7:ENST00000532201.5	protein_coding	protein_coding	protein_coding	protein_coding	16	170	2	1.52559	2.21014	2.89469	0.00984661	6.9734e-4	0.0877296	0.024224
chr2	190929462	190929556	959987	0	+	0.457447	(0.44,0.476]	chr2	104233	14	INTRON	INTRON	GLS	ENSG00000115419.13	ENST00000320717.8:ENST00000338435.8:ENST00000409626.5:ENST00000457316.5:ENST00000409428.5:ENST00000409215.5	protein_coding	protein_coding	protein_coding	protein_coding	3	37	2	2.20949	2.21014	2.21079	0.0672585	0.0194581	0.183051	0.119831
chr22	40069076	40069176	7517090	0	+	0.47	(0.44,0.476]	chr22	768084	231	INTRON	INTRON	TNRC6B	ENSG00000100354.21	ENST00000301923.13:ENST00000441751.5:ENST00000402203.5	protein_coding	protein_coding	protein_coding	protein_coding	3	37	2	2.20949	2.21014	2.21079	0.0672585	0.0194581	0.183051	0.119831
chr4	126470040	126470140	2235409	0	-	0.45	(0.44,0.476]	chr4	219023	45	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	3	37	2	2.20949	2.21014	2.21079	0.0672585	0.0194581	0.183051	0.119831
chr5	21489726	21489825	2326031	0	+	0.444444	(0.44,0.476]	chr5	225028	152	INTRON	INTRON	GUSBP1	ENSG00000183666.18	ENST00000508260.5:ENST00000449061.3:ENST00000685731.1:ENST00000688956.1:ENST00000692922.1:ENST00000686144.1:ENST00000607545.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	3	37	2	2.20949	2.21014	2.21079	0.0672585	0.0194581	0.183051	0.119831
chr7	5220219	5220318	3272271	0	+	0.444444	(0.44,0.476]	chr7	304127	13	INTRON	INTRON	WIPI2	ENSG00000157954.15	ENST00000401525.7:ENST00000288828.9:ENST00000404704.7:ENST00000466014.5:ENST00000382384.6:ENST00000484262.1:ENST00000465102.5:ENST00000480238.5:ENST00000488359.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	37	2	2.20949	2.21014	2.21079	0.0672585	0.0194581	0.183051	0.119831
chr8	52704406	52704506	3951008	0	-	0.26	[0,0.28]	chr8	362390	171	INTRON	INTRON	RB1CC1	ENSG00000023287.13	ENST00000025008.10:ENST00000435644.6:ENST00000521611.1:ENST00000518710.5:ENST00000517963.1:ENST00000518211.1:ENST00000518468.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	148	2	2.19138	2.210135	2.22889	0.0128832	0.00256392	0.0926667	0.0466761
chr6	158809008	158809108	3253234	0	-	0.52	(0.515,0.57]	chr6	302380	193	INTRON	INTRON	EZR	ENSG00000092820.19	ENST00000337147.11:ENST00000367075.4:ENST00000476189.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	59	2	1.90463	2.21012	2.51561	0.0141753	0.00635044	0.0959618	0.0723103
chr1	112660378	112660478	186743	0	+	0.53	(0.515,0.57]	chr1	20673	2	INTRON	INTRON	CAPZA1	ENSG00000116489.13	ENST00000476936.5:ENST00000263168.4:ENST00000498626.1:ENST00000466066.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	14	131	2	1.83977	2.210115	2.58046	0.00376163	2.79702e-4	0.0539118	0.014889
chr20	63714953	63715053	7300374	0	+	0.29	(0.28,0.32]	chr20	743023	54	INTRON	INTRON	ZGPAT	ENSG00000197114.12	ENST00000448100.6:ENST00000355969.11:ENST00000477340.5:ENST00000357119.8:ENST00000369967.7:ENST00000328969.5:ENST00000472711.5:ENST00000478385.5:ENST00000468235.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	46	2	1.96475	2.2100999999999997	2.45545	0.0438092	0.0428385	0.162255	0.14901
chr8	31131964	31132064	3728938	0	+	0.31	(0.28,0.32]	chr8	346651	2	SS3_PROX	SS3_PROX:INTRON	WRN	ENSG00000165392.11	ENST00000650667.1:ENST00000298139.7:ENST00000521620.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	46	2	1.96475	2.2100999999999997	2.45545	0.0438092	0.0428385	0.162255	0.14901
chr1	213004132	213004232	634975	0	-	0.41	(0.408,0.44]	chr1	75009	20	INTRON	INTRON	ANGEL2	ENSG00000174606.14	ENST00000366962.8:ENST00000360506.6:ENST00000535388.2	protein_coding	protein_coding	protein_coding	protein_coding	8	83	2	1.49971	2.21002	2.92033	0.0298505	0.00162151	0.142135	0.0367655
chr7	140470288	140470387	3661535	0	-	0.535354	(0.515,0.57]	chr7	339916	97	INTRON	INTRON	MKRN1	ENSG00000133606.11	ENST00000255977.7:ENST00000475010.5:ENST00000495305.5:ENST00000474576.5:ENST00000480552.5:ENST00000496169.5:ENST00000443720.6:ENST00000471104.5:ENST00000467513.5:ENST00000494939.1:ENST00000498535.1:ENST00000473444.1:ENST00000475180.5:ENST00000481705.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	52	2	1.49871	2.20993	2.92115	0.0770828	0.00110258	0.196285	0.03038
chr1	93083911	93084011	162585	0	+	0.38	(0.378,0.408]	chr1	17567	25	INTRON	INTRON	MTF2	ENSG00000143033.18	ENST00000540243.5:ENST00000545708.5:ENST00000474314.6:ENST00000370298.9:ENST00000473430.5:ENST00000494963.5:ENST00000471953.5:ENST00000370303.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	38	2	1.81685	2.209905	2.60296	0.0597868	0.0267851	0.189982	0.123349
chr12	103934675	103934772	5208372	0	+	0.381443	(0.378,0.408]	chr12	492925	5	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	HSP90B1	ENSG00000166598.16	ENST00000550595.2:ENST00000681861.1:ENST00000680899.1:ENST00000680391.1:ENST00000680653.1:ENST00000679779.1:ENST00000680281.1:ENST00000681949.1:ENST00000680989.1:ENST00000614327.2:ENST00000680762.1:ENST00000680663.1:ENST00000681172.1:ENST00000640977.2:ENST00000540297.7:ENST00000681941.1:ENST00000681910.1:ENST00000681704.1:ENST00000679377.1:ENST00000299767.10:ENST00000681174.1:ENST00000680370.1:ENST00000679538.1:ENST00000681698.1:ENST00000680242.1:ENST00000548462.5:ENST00000680316.1:ENST00000679861.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	38	2	1.81685	2.209905	2.60296	0.0597868	0.0267851	0.189982	0.123349
chr2	69621477	69621577	1149410	0	-	0.4	(0.378,0.408]	chr2	122731	641	INTRON	INTRON	AAK1	ENSG00000115977.21	ENST00000409085.9:ENST00000606389.7:ENST00000409068.5:ENST00000406297.7:ENST00000495836.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	38	2	1.81685	2.209905	2.60296	0.0597868	0.0267851	0.189982	0.123349
chr7	121140326	121140426	3395169	0	+	0.38	(0.378,0.408]	chr7	317766	1	SS3_PROX	SS3_PROX:INTRON	CPED1	ENSG00000106034.18	ENST00000310396.10:ENST00000450913.6:ENST00000423795.5	protein_coding	protein_coding	protein_coding	protein_coding	3	38	2	1.81685	2.209905	2.60296	0.0597868	0.0267851	0.189982	0.123349
chr7	139389022	139389122	3437887	0	+	0.31	(0.28,0.32]	chr7	320340	125	INTRON	INTRON	LUC7L2:FMC1-LUC7L2	ENSG00000146963.18:ENSG00000269955.2	ENST00000541170.7:ENST00000541515.3:ENST00000608368.5:ENST00000619796.4:ENST00000354926.9:ENST00000456182.5:ENST00000263545.7:ENST00000463912.5:ENST00000498518.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	138	2	2.03489	2.209855	2.38482	0.00641776	0.0030811	0.0695827	0.0510391
chr5	65930603	65930702	2370884	0	+	0.282828	(0.28,0.32]	chr5	228472	34	INTRON	INTRON	ERBIN	ENSG00000112851.15	ENST00000380943.6:ENST00000507490.1:ENST00000416865.6:ENST00000380935.5:ENST00000284037.10:ENST00000380938.6:ENST00000511297.5:ENST00000506030.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	117	2	2.17756	2.2098250000000004	2.24209	0.0130851	0.0025277	0.0934394	0.0465056
chr11	47736015	47736115	4951091	0	-	0.55	(0.515,0.57]	chr11	464406	15	INTRON	INTRON	FNBP4	ENSG00000109920.13	ENST00000263773.10:ENST00000528388.5:ENST00000534003.5:ENST00000527894.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	58	2	1.68687	2.209725	2.73258	0.0300837	0.00260192	0.129186	0.0470772
chr16	70431659	70431758	6511391	0	-	0.474747	(0.44,0.476]	chr16	630693	87	INTRON	INTRON	ST3GAL2	ENSG00000157350.13	ENST00000342907.3:ENST00000566097.1:ENST00000567586.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	17	190	2	1.97589	2.209675	2.44346	0.00144004	4.03004e-4	0.0347852	0.0185763
chr1	41182035	41182134	430224	0	-	0.444444	(0.44,0.476]	chr1	52248	192	INTRON	INTRON	SCMH1	ENSG00000010803.17	ENST00000695335.1:ENST00000372596.5:ENST00000372597.5:ENST00000337495.9:ENST00000695336.1	protein_coding	protein_coding	protein_coding	protein_coding	3	37	2	1.83899	2.20966	2.58033	0.0589734	0.0247511	0.167915	0.131869
chr1	227774694	227774793	330690	0	+	0.454545	(0.44,0.476]	chr1	38090	38	INTRON	INTRON	SNAP47	ENSG00000143740.15	ENST00000681827.1:ENST00000679575.1:ENST00000680854.1:ENST00000681006.1:ENST00000366760.5:ENST00000681447.1:ENST00000680992.1:ENST00000680695.1:ENST00000366759.9:ENST00000315781.10:ENST00000681685.1:ENST00000681678.1:ENST00000681149.1:ENST00000418653.6:ENST00000617596.5:ENST00000681929.1:ENST00000426344.6:ENST00000680202.1:ENST00000679561.1:ENST00000681465.1:ENST00000681554.1:ENST00000681252.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	37	2	1.83899	2.20966	2.58033	0.0589734	0.0247511	0.167915	0.131869
chr17	15510462	15510561	6731932	0	-	0.454545	(0.44,0.476]	chr17	660295	31	INTRON	INTRON	TVP23C-CDRT4:TVP23C	ENSG00000259024.6:ENSG00000175106.17	ENST00000522212.6:ENST00000557349.5:ENST00000481756.7:ENST00000518506.4:ENST00000225576.7:ENST00000581273.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	75	2	1.78423	2.2096549999999997	2.63508	0.0143065	0.00501007	0.104058	0.0618077
chr1	160259487	160259587	571581	0	-	0.48	(0.476,0.515]	chr1	69176	151	INTRON	INTRON	DCAF8	ENSG00000132716.19	ENST00000326837.6:ENST00000368073.7:ENST00000368074.6:ENST00000461888.5:ENST00000475733.5:ENST00000610139.5:ENST00000447377.5:ENST00000495887.1:ENST00000440682.5:ENST00000407642.6:ENST00000419626.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	82	2	1.34326	2.209635	3.07601	0.0529391	5.95211e-4	0.161923	0.0221865
chr12	25246884	25246983	5298346	0	-	0.414141	(0.408,0.44]	chr12	503953	11	INTRON	INTRON	KRAS	ENSG00000133703.14	ENST00000256078.10:ENST00000311936.8:ENST00000686877.1:ENST00000685328.1:ENST00000693229.1:ENST00000687356.1:ENST00000692768.1:ENST00000688940.1:ENST00000690804.1:ENST00000557334.6:ENST00000686969.1:ENST00000556131.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	61	2	2.08486	2.2095849999999997	2.33431	0.0145898	0.0129219	0.0990564	0.0981689
chr1	51363081	51363176	452765	0	-	0.484211	(0.476,0.515]	chr1	54299	14	INTRON	INTRON	EPS15	ENSG00000085832.17	ENST00000371733.8:ENST00000371730.6	protein_coding	protein_coding	protein_coding	protein_coding	8	91	2	1.93124	2.209565	2.48789	0.00916342	0.00256502	0.0812949	0.0466761
chr9	37175821	37175921	4118213	0	+	0.28	[0,0.28]	chr9	375384	157	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000322831.6:ENST00000461038.5:ENST00000488607.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	87	2	1.85833	2.20953	2.56073	0.0378973	0.00743095	0.141283	0.0772645
chr16	11796733	11796833	6445703	0	-	0.46	(0.44,0.476]	chr16	620976	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ZC3H7A	ENSG00000122299.12	ENST00000355758.9:ENST00000571198.5:ENST00000575170.1:ENST00000572781.5:ENST00000574995.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	69	2	1.86959	2.209515	2.54944	0.0176166	0.00591346	0.105146	0.0694038
chr3	128069758	128069854	1496710	0	+	0.302083	(0.28,0.32]	chr3	156306	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	SEC61A1	ENSG00000058262.10	ENST00000464451.5:ENST00000243253.8:ENST00000424880.2:ENST00000483956.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	179	2	1.77702	2.20941	2.6418	0.0157299	2.1005e-4	0.101453	0.0126685
chr21	46269803	46269900	7471264	0	-	0.546392	(0.515,0.57]	chr21	761661	19	INTRON	INTRON	MCM3AP	ENSG00000160294.11	ENST00000397708.1:ENST00000291688.6	protein_coding	protein_coding	protein_coding	protein_coding	5	52	2	2.15866	2.20939	2.26012	0.0160033	0.0100547	0.109464	0.0848452
chr7	119732633	119732733	3628664	0	-	0.53	(0.515,0.57]	chr7	337319	273	INTRON	INTRON	LINC02476	ENSG00000225546.6	ENST00000660268.1:ENST00000431071.5	lncRNA	lncRNA	lncRNA	lncRNA	5	52	2	2.15866	2.20939	2.26012	0.0160033	0.0100547	0.109464	0.0848452
chr16	23881492	23881592	6324215	0	+	0.47	(0.44,0.476]	chr16	605697	123	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000645517.1:ENST00000498739.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	92	2	2.10892	2.20937	2.30982	0.0132897	0.00140739	0.0944742	0.0344267
chr16	2120077	2120177	6431196	0	-	0.55	(0.515,0.57]	chr16	618727	3	INTRON	INTRON	PKD1	ENSG00000008710.20	ENST00000262304.9:ENST00000423118.5	protein_coding	protein_coding	protein_coding	protein_coding	4	43	2	2.03361	2.2091849999999997	2.38476	0.0325854	0.0110593	0.145164	0.0873897
chr2	167922732	167922831	1259030	0	-	0.30303	(0.28,0.32]	chr2	133340	216	INTRON	INTRON	B3GALT1-AS1	ENSG00000235335.3	ENST00000430546.2:ENST00000657553.1:ENST00000670221.1:ENST00000436982.2	lncRNA	lncRNA	lncRNA	lncRNA	7	106	2	2.06523	2.2091849999999997	2.35314	0.0112084	0.00539714	0.0880475	0.066545000000000007
chr7	111310187	111310287	3621584	0	-	0.35	(0.32,0.35]	chr7	337093	3463	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	43	2	1.77704	2.209165	2.64129	0.0719969	0.0222819	0.187322	0.124303
chr8	129396655	129396754	4059236	0	-	0.333333	(0.32,0.35]	chr8	369574	64	INTRON	INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1:ENST00000676273.1:ENST00000667643.1:ENST00000668791.1:ENST00000663716.1:ENST00000663572.1:ENST00000676148.1:ENST00000667962.1:ENST00000674877.1:ENST00000675316.1:ENST00000674656.1:ENST00000446592.7:ENST00000667341.1:ENST00000675186.1:ENST00000652971.1:ENST00000661447.1:ENST00000674863.1:ENST00000675498.1:ENST00000675527.1:ENST00000676108.1:ENST00000657647.1:ENST00000675589.1:ENST00000675913.1:ENST00000675109.1:ENST00000671632.1:ENST00000671311.1:ENST00000676099.1:ENST00000660652.1:ENST00000675522.1:ENST00000675183.1:ENST00000658861.1:ENST00000663991.1:ENST00000675044.1:ENST00000675435.1:ENST00000674639.1:ENST00000676069.1:ENST00000675532.1:ENST00000674762.1:ENST00000523151.6:ENST00000675948.1:ENST00000665364.1:ENST00000657251.1:ENST00000675166.1:ENST00000674883.1:ENST00000675867.1:ENST00000674580.1:ENST00000675393.1:ENST00000520048.1:ENST00000674906.1:ENST00000676030.1:ENST00000670588.1:ENST00000675072.1:ENST00000664936.1:ENST00000652914.1	lncRNA	lncRNA	lncRNA	lncRNA	3	43	2	1.77704	2.209165	2.64129	0.0719969	0.0222819	0.187322	0.124303
chr20	58652638	58652737	7290186	0	+	0.535354	(0.515,0.57]	chr20	741709	1	INTRON	INTRON	STX16	ENSG00000124222.22	ENST00000361830.7:ENST00000355957.9:ENST00000458280.5:ENST00000312283.12:ENST00000412911.5:ENST00000371141.8:ENST00000359617.8:ENST00000460655.5:ENST00000476384.5:ENST00000483434.5:ENST00000496117.5:ENST00000490700.5:ENST00000371132.8:ENST00000496003.5:ENST00000467096.5:ENST00000358029.8:ENST00000464640.5:ENST00000493301.5:ENST00000468590.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	11	107	2	2.1218	2.20916	2.29652	0.00198964	0.00157487	0.0411469	0.0361957
chr1	1516666	1516766	1895	0	+	0.45	(0.44,0.476]	chr1	450	1	SS3_PROX	SS3_PROX:INTRON	ATAD3A	ENSG00000197785.14	ENST00000378756.8:ENST00000672388.1:ENST00000378755.9:ENST00000339113.9:ENST00000536055.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	59	2	2.1762	2.209045	2.24189	0.0193405	0.0092251	0.108861	0.0855292
chr18	36058894	36058993	6963460	0	-	0.323232	(0.32,0.35]	chr18	689080	56	INTRON	INTRON	RPRD1A	ENSG00000141425.18	ENST00000399022.9:ENST00000590898.5:ENST00000357384.8:ENST00000588737.5:ENST00000589050.1:ENST00000592674.1:ENST00000588459.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:nonsense_mediated_decay:processed_transcript	4	51	2	1.67393	2.20904	2.74415	0.0496128	0.0198267	0.174685	0.109608
chr4	126673372	126673472	2237443	0	-	0.4	(0.378,0.408]	chr4	219023	2079	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	8	95	2	1.51701	2.209015	2.90102	0.0404516	3.47934e-4	0.144865	0.0166215
chr9	110252159	110252258	4313955	0	-	0.40404	(0.378,0.408]	chr9	396574	3	INTRON	INTRON	TXN	ENSG00000136810.13	ENST00000374517.6:ENST00000374515.9	protein_coding	protein_coding	protein_coding	protein_coding	8	86	2	1.23177	2.208925	3.18608	0.0747101	3.50013e-4	0.192652	0.0166791
chr3	25656644	25656744	1642087	0	-	0.29	(0.28,0.32]	chr3	168598	108	INTRON	INTRON	TOP2B	ENSG00000077097.16	ENST00000264331.9:ENST00000435706.6:ENST00000424225.1	protein_coding	protein_coding	protein_coding	protein_coding	3	46	2	2.0243	2.2088850000000004	2.39347	0.0504457	0.0364967	0.156383	0.153759
chr1	35100041	35100139	68119	0	+	0.5	(0.476,0.515]	chr1	8682	21	INTRON	INTRON	ZMYM1	ENSG00000197056.11	ENST00000650449.1:ENST00000611874.4:ENST00000417119.5:ENST00000359858.9:ENST00000488455.5:ENST00000373330.1:ENST00000373329.5:ENST00000475654.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	61	2	1.92984	2.2088650000000003	2.48789	0.0466474	0.00256502	0.151522	0.0466761
chr1	8623214	8623313	371835	0	-	0.454545	(0.44,0.476]	chr1	43527	82	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000400907.6:ENST00000656437.1:ENST00000659924.1:ENST00000480342.5:ENST00000514428.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	50	2	1.77101	2.20885	2.64669	0.0693975	0.0040295	0.184298	0.0578376
chr14	101763370	101763470	5818510	0	+	0.48	(0.476,0.515]	chr14	551812	4	SS5_PROX	SS5_PROX:INTRON	PPP2R5C	ENSG00000078304.20	ENST00000694906.1:ENST00000422945.6:ENST00000554442.5:ENST00000556068.5:ENST00000556260.6:ENST00000328724.9:ENST00000554504.1:ENST00000553890.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	137	2	1.90822	2.208835	2.50945	0.00708879	2.84218e-4	0.0722268	0.0150568
chr1	171497996	171498096	253339	0	+	0.48	(0.476,0.515]	chr1	30096	119	INTRON	INTRON	PRRC2C	ENSG00000117523.18	ENST00000647382.2:ENST00000367742.7:ENST00000476522.5:ENST00000338920.8:ENST00000467601.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	14	152	2	2.02236	2.2087849999999998	2.39521	0.00143289	0.00120301	0.0347139	0.0316426
chr1	193162790	193162890	285029	0	+	0.32	(0.28,0.32]	chr1	32819	12	INTRON	INTRON	CDC73	ENSG00000134371.14	ENST00000649895.1:ENST00000643006.1:ENST00000367435.5:ENST00000650197.1:ENST00000648071.1:ENST00000635846.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	46	2	1.90263	2.208755	2.51488	0.0503272	0.0380957	0.17488	0.141678
chr11	77609516	77609616	4994044	0	-	0.31	(0.28,0.32]	chr11	471882	237	INTRON	INTRON	CLNS1A	ENSG00000074201.9	ENST00000526761.5	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	3	46	2	1.90263	2.208755	2.51488	0.0503272	0.0380957	0.17488	0.141678
chr10	73021089	73021188	4647077	0	-	0.414141	(0.408,0.44]	chr10	427494	38	INTRON	INTRON	P4HA1	ENSG00000122884.13	ENST00000394890.7:ENST00000307116.6:ENST00000373008.6:ENST00000440381.5:ENST00000263556.3	protein_coding	protein_coding	protein_coding	protein_coding	14	160	2	2.03147	2.208735	2.386	0.00437346	2.43522e-4	0.0584326	0.0137802
chr15	58012736	58012825	6187006	0	-	0.483146	(0.476,0.515]	chr15	589768	2	INTRON	INTRON	ALDH1A2	ENSG00000128918.15	ENST00000537372.5:ENST00000249750.9:ENST00000347587.7:ENST00000430119.6:ENST00000558231.5:ENST00000559517.5:ENST00000559266.5:ENST00000561070.5:ENST00000558595.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	11	113	2	1.79871	2.20871	2.61871	0.00554225	0.00174257	0.0674105	0.0375363
chr11	13706413	13706511	4742688	0	+	0.234694	[0,0.28]	chr11	439171	56	INTRON	INTRON	FAR1	ENSG00000197601.13	ENST00000354817.8:ENST00000532701.1:ENST00000524933.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	72	2	1.85666	2.208695	2.56073	0.0660997	0.00743095	0.181924	0.0772645
chr1	77594853	77594953	492579	0	-	0.3	(0.28,0.32]	chr1	58292	98	INTRON	INTRON	ZZZ3	ENSG00000036549.13	ENST00000370801.8:ENST00000481346.5:ENST00000476275.5:ENST00000370798.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	56	2	1.90249	2.208685	2.51488	0.0380957	0.0261803	0.141678	0.133676
chr6	147719248	147719348	2991189	0	+	0.37	(0.35,0.378]	chr6	280167	264	INTRON	INTRON	ENSG00000227681	ENSG00000227681.5	ENST00000427015.1:ENST00000432506.5:ENST00000442094.5:ENST00000434985.1	lncRNA	lncRNA	lncRNA	lncRNA	9	108	2	1.89908	2.208685	2.51829	0.00658205	0.00313284	0.0737338	0.0499756
chr18	51033113	51033213	6901650	0	+	0.26	[0,0.28]	chr18	683840	21	INTRON	INTRON	SMAD4	ENSG00000141646.15	ENST00000588860.5:ENST00000398417.6:ENST00000589076.5:ENST00000342988.8:ENST00000590061.1:ENST00000592911.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	99	2	1.92964	2.20868	2.48772	0.0157154	0.0125761	0.109464	0.0926667
chr5	53957817	53957917	2617382	0	-	0.22	[0,0.28]	chr5	248835	458	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	154	2	2.09111	2.208605	2.3261	0.00567932	0.00538874	0.0678837	0.0643592
chr20	5574557	5574646	7311970	0	-	0.52809	(0.515,0.57]	chr20	744567	2	INTRON	INTRON	GPCPD1	ENSG00000125772.14	ENST00000379019.7:ENST00000481038.5:ENST00000418646.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	12	114	2	1.24949	2.208565	3.16764	0.0486249	1.65529e-5	0.153975	0.00307083
chr1	54272541	54272641	462417	0	-	0.55	(0.515,0.57]	chr1	55761	140	INTRON	INTRON	SSBP3	ENSG00000157216.16	ENST00000610401.5:ENST00000357475.9:ENST00000371319.8:ENST00000417664.7:ENST00000533946.6:ENST00000326956.12:ENST00000371320.8:ENST00000426150.5:ENST00000533209.5:ENST00000525990.1:ENST00000528787.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	70	2	1.94248	2.20849	2.4745	0.0115668	0.00279583	0.0962115	0.0469265
chr7	105330763	105330863	3603324	0	-	0.38	(0.378,0.408]	chr7	336161	238	INTRON	INTRON	SRPK2	ENSG00000135250.17	ENST00000393651.8:ENST00000482897.5:ENST00000460391.5:ENST00000462282.5:ENST00000465112.5:ENST00000482862.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	109	2	1.95026	2.208385	2.46651	0.0138007	6.45662e-4	0.095051	0.023017
chr7	100312421	100312521	3586532	0	-	0.46	(0.44,0.476]	chr7	334330	113	INTRON	INTRON	PMS2P1	ENSG00000078319.11	ENST00000685724.1:ENST00000692351.1:ENST00000685541.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	13	144	2	2.06893	2.20831	2.34769	0.00155283	0.00145151	0.0358949	0.0349797
chr8	129503955	129504055	4060321	0	-	0.46	(0.44,0.476]	chr8	369642	88	INTRON	INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1:ENST00000676273.1:ENST00000667643.1:ENST00000668791.1:ENST00000663716.1:ENST00000663572.1:ENST00000676148.1:ENST00000667962.1:ENST00000674877.1:ENST00000675316.1:ENST00000674656.1:ENST00000446592.7:ENST00000667341.1:ENST00000675186.1:ENST00000652971.1:ENST00000661447.1:ENST00000674863.1:ENST00000675498.1:ENST00000675527.1:ENST00000676108.1:ENST00000657647.1:ENST00000675589.1:ENST00000675913.1:ENST00000675109.1:ENST00000671632.1:ENST00000671311.1:ENST00000676099.1:ENST00000660652.1:ENST00000675522.1:ENST00000675183.1:ENST00000658861.1:ENST00000663991.1:ENST00000675044.1:ENST00000675435.1:ENST00000674639.1:ENST00000676069.1:ENST00000675532.1:ENST00000674762.1:ENST00000523151.6:ENST00000675948.1:ENST00000665364.1:ENST00000657251.1:ENST00000675166.1:ENST00000674883.1:ENST00000675867.1:ENST00000674580.1:ENST00000675393.1:ENST00000520048.1:ENST00000674906.1:ENST00000676030.1:ENST00000670588.1:ENST00000675072.1:ENST00000664936.1:ENST00000652914.1:ENST00000657069.1	lncRNA	lncRNA	lncRNA	lncRNA	4	50	2	2.0776	2.2082949999999997	2.33899	0.0292951	0.0142027	0.141862	0.0959987
chr2	112655529	112655629	852162	0	+	0.45	(0.44,0.476]	chr2	95585	22	INTRON	INTRON	SLC20A1	ENSG00000144136.11	ENST00000272542.8:ENST00000498224.5:ENST00000433924.5:ENST00000456264.5:ENST00000413135.1:ENST00000480984.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	24	265	2	1.80967	2.208245	2.60682	0.00263127	3.05184e-5	0.0457743	0.00441426
chr17	80830721	80830821	6687657	0	+	0.51	(0.476,0.515]	chr17	653460	71	INTRON	INTRON	RPTOR	ENSG00000141564.15	ENST00000574767.5:ENST00000577161.5:ENST00000306801.8:ENST00000544334.6:ENST00000575542.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	59	2	1.69138	2.208225	2.72507	0.0481165	0.0029369	0.153019	0.0496505
chr22	46677251	46677348	7535152	0	+	0.329897	(0.32,0.35]	chr22	770527	1	UTR3	UTR3:EXON_MRNA	GRAMD4	ENSG00000075240.17	ENST00000406902.6:ENST00000361034.7:ENST00000408031.1	protein_coding	protein_coding	protein_coding	protein_coding	10	133	2	1.74978	2.20819	2.6666	0.0157772	5.34642e-4	0.101453	0.0209063
chr12	112040778	112040878	5414718	0	-	0.35	(0.32,0.35]	chr12	517132	2	SS3_PROX	SS3_PROX:INTRON	NAA25	ENSG00000111300.10	ENST00000261745.9:ENST00000552527.5:ENST00000549711.5:ENST00000550701.5:ENST00000551858.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	60	2	1.84365	2.20814	2.57263	0.0312297	0.0184323	0.13151	0.116493
chr1	158638741	158638826	570129	0	-	0.317647	(0.28,0.32]	chr1	68796	1	INTRON	INTRON	SPTA1	ENSG00000163554.15	ENST00000643759.2	protein_coding	protein_coding	protein_coding	protein_coding	17	244	2	2.19375	2.208085	2.22242	0.00213042	6.65393e-4	0.041756	0.0233692
chr4	3181414	3181502	1918167	0	+	0.352273	(0.35,0.378]	chr4	192699	4	INTRON	INTRON	HTT	ENSG00000197386.14	ENST00000680956.1:ENST00000680360.1:ENST00000681528.1:ENST00000680239.1:ENST00000355072.11:ENST00000680291.1:ENST00000510626.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	40	2	2.17079	2.20807	2.24535	0.0647516	0.0225978	0.179192	0.124921
chr6	57153190	57153275	2878707	0	+	0.364706	(0.35,0.378]	chr6	273312	5	INTRON	INTRON	ZNF451	ENSG00000112200.17	ENST00000357489.7:ENST00000370706.9:ENST00000491832.6:ENST00000504603.1:ENST00000508548.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	40	2	2.17079	2.20807	2.24535	0.0647516	0.0225978	0.179192	0.124921
chr7	148812791	148812886	3670026	0	-	0.357895	(0.35,0.378]	chr7	340555	7	INTRON	INTRON	EZH2	ENSG00000106462.12	ENST00000683292.1:ENST00000320356.7:ENST00000492143.5:ENST00000478654.5:ENST00000350995.6:ENST00000460911.5:ENST00000684400.1:ENST00000683744.1:ENST00000684510.1:ENST00000682317.1:ENST00000683293.1:ENST00000682263.1:ENST00000684300.1:ENST00000476773.5:ENST00000483967.5:ENST00000684436.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	74	2	1.81955	2.208055	2.59656	0.0194679	0.00638551	0.11986	0.0693551
chr7	111212409	111212509	3620606	0	-	0.5	(0.476,0.515]	chr7	337093	2485	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	145	2	1.94895	2.20804	2.46713	0.00341751	6.29989e-4	0.0517761	0.0226424
chr11	47547606	47547706	4950348	0	-	0.42	(0.408,0.44]	chr11	464246	230	INTRON	INTRON	CELF1	ENSG00000149187.19	ENST00000310513.10:ENST00000687097.1:ENST00000531165.5:ENST00000530151.5:ENST00000525841.5:ENST00000526419.1	protein_coding	protein_coding	protein_coding	protein_coding	9	101	2	1.80815	2.208	2.60785	0.0109379	0.00146754	0.0873034	0.035104
chr1	150575569	150575669	551045	0	-	0.45	(0.44,0.476]	chr1	64761	15	UTR3	UTR3:EXON_MRNA:INTRON	MCL1	ENSG00000143384.14	ENST00000678770.1:ENST00000678610.1:ENST00000464132.2:ENST00000620947.4:ENST00000369026.3:ENST00000676522.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	17	190	2	1.95895	2.207995	2.45704	0.0015768	3.74617e-4	0.036676	0.017947
chr19	11112503	11112594	7017059	0	+	0.472527	(0.44,0.476]	chr19	697464	5	INTRON	INTRON	LDLR	ENSG00000130164.14	ENST00000557933.5:ENST00000558518.6:ENST00000545707.5:ENST00000535915.5:ENST00000455727.6:ENST00000558013.5:ENST00000252444.9:ENST00000560467.1:ENST00000560173.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	98	2	2.12992	2.207985	2.28605	0.010975	0.00206758	0.092635	0.0411504
chr1	28269448	28269548	55615	0	+	0.36	(0.35,0.378]	chr1	7201	2	SS5_PROX	SS5_PROX:INTRON	SESN2	ENSG00000130766.5	ENST00000253063.4	protein_coding	protein_coding	protein_coding	protein_coding	5	68	2	1.81767	2.20797	2.59827	0.0640429	0.0016492	0.177882	0.0375159
chr4	1695610	1695701	2095053	0	-	0.527473	(0.515,0.57]	chr4	207198	4	INTRON	INTRON	SLBP	ENSG00000163950.13	ENST00000489418.6:ENST00000429429.6:ENST00000318386.8:ENST00000483348.5:ENST00000488267.5	protein_coding	protein_coding	protein_coding	protein_coding	6	66	2	2.03361	2.207845	2.38208	0.0325854	0.00191752	0.145164	0.0395751
chr2	65121196	65121296	1142873	0	-	0.45	(0.44,0.476]	chr2	122186	160	INTRON	INTRON	RAB1A	ENSG00000138069.18	ENST00000649427.1:ENST00000494188.1:ENST00000409784.8:ENST00000409892.5:ENST00000409751.1:ENST00000398529.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	11	129	2	1.81921	2.20783	2.59645	0.0142184	1.67824e-4	0.0960818	0.0112247
chr8	224712	224812	3883275	0	-	0.46	(0.44,0.476]	chr8	357290	49	INTRON	INTRON	RPL23AP53	ENSG00000223508.5	ENST00000606975.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	4	49	2	2.02558	2.207805	2.39003	0.0363567	0.0106488	0.138959	0.0915714
chr5	66079313	66079411	2372408	0	+	0.316327	(0.28,0.32]	chr5	228636	9	UTR3	UTR3:EXON_MRNA	ERBIN	ENSG00000112851.15	ENST00000380943.6:ENST00000380935.5:ENST00000284037.10	protein_coding	protein_coding	protein_coding	protein_coding	15	216	2	1.97805	2.2077850000000003	2.43752	0.00245124	0.00112399	0.0458066	0.0306963
chr9	112492714	112492814	4185847	0	+	0.34	(0.32,0.35]	chr9	381813	52	INTRON	INTRON	KIAA1958	ENSG00000165185.15	ENST00000337530.11:ENST00000536272.5:ENST00000374244.3	protein_coding	protein_coding	protein_coding	protein_coding	6	65	2	1.37958	2.207775	3.03597	0.0577841	0.00832487	0.188484	0.0774402
chr7	102859243	102859342	3590211	0	-	0.464646	(0.44,0.476]	chr7	335159	40	INTRON	INTRON	FBXL13	ENSG00000161040.18	ENST00000694871.1:ENST00000694870.1:ENST00000448002.6:ENST00000379305.7:ENST00000440067.3:ENST00000456695.6:ENST00000313221.8:ENST00000436908.5:ENST00000455112.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	49	2	2.08277	2.207745	2.33272	0.0309998	0.0129984	0.13151	0.0991656
chr12	111595449	111595549	5413194	0	-	0.48	(0.476,0.515]	chr12	516941	307	INTRON	INTRON	ATXN2	ENSG00000204842.18	ENST00000642389.2:ENST00000608853.5:ENST00000672613.1:ENST00000673436.1:ENST00000643669.2:ENST00000616825.4:ENST00000389153.10:ENST00000550104.5:ENST00000483311.6:ENST00000672335.1:ENST00000673557.1:ENST00000673283.1:ENST00000673449.1:ENST00000535949.5:ENST00000542287.6:ENST00000644883.1:ENST00000647305.1:ENST00000671792.1:ENST00000392645.6:ENST00000672105.1:ENST00000549455.1:ENST00000548492.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	81	2	1.96437	2.20772	2.45107	0.0124351	0.00301722	0.0920366	0.0507519
chr10	130178941	130179041	4536764	0	+	0.48	(0.476,0.515]	chr10	418831	2	SS3_PROX	SS3_PROX:INTRON	GLRX3	ENSG00000108010.12	ENST00000331244.10:ENST00000481034.1:ENST00000368644.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	49	2	1.92984	2.207675	2.48551	0.0466474	0.00756632	0.151522	0.0773151
chr4	118616505	118616604	2024993	0	+	0.393939	(0.378,0.408]	chr4	201331	72	INTRON	INTRON	ENSG00000260404	ENSG00000260404.4	ENST00000567913.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	6	71	2	1.71374	2.2075750000000003	2.70141	0.0274158	0.00411614	0.136498	0.0564981
chr10	11586235	11586335	4555814	0	-	0.29	(0.28,0.32]	chr10	420461	125	INTRON	INTRON	USP6NL	ENSG00000148429.15	ENST00000609104.6:ENST00000606752.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	64	2	1.68411	2.20744	2.73077	0.0323543	0.0220748	0.145026	0.115395
chr3	128730456	128730556	1497253	0	+	0.48	(0.476,0.515]	chr3	156330	37	INTRON	INTRON	RAB7A	ENSG00000075785.14	ENST00000676214.1:ENST00000675864.1:ENST00000675712.1:ENST00000676425.1:ENST00000490093.6:ENST00000675342.1:ENST00000265062.8:ENST00000674748.1:ENST00000493186.6:ENST00000482525.5:ENST00000491681.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	49	2	2.19809	2.20743	2.21677	0.0207026	0.020317	0.121522	0.110999
chr5	88216167	88216267	2669208	0	-	0.48	(0.476,0.515]	chr5	252658	86	INTRON	INTRON	TMEM161B	ENSG00000164180.14	ENST00000514135.5:ENST00000296595.11:ENST00000511087.5:ENST00000510089.5:ENST00000506536.5:ENST00000511218.5:ENST00000512429.5:ENST00000507872.1:ENST00000509387.5:ENST00000503755.5:ENST00000513487.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	49	2	2.19809	2.20743	2.21677	0.0207026	0.020317	0.121522	0.110999
chr6	149678014	149678111	3246331	0	-	0.505155	(0.476,0.515]	chr6	301623	9	INTRON	INTRON	LATS1	ENSG00000131023.13	ENST00000543571.6:ENST00000253339.9:ENST00000441107.5:ENST00000542747.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	49	2	2.19809	2.20743	2.21677	0.0207026	0.020317	0.121522	0.110999
chr10	73131055	73131152	4647905	0	-	0.42268	(0.408,0.44]	chr10	427573	2	INTRON	INTRON	ECD	ENSG00000122882.11	ENST00000494307.1	protein_coding	protein_coding	protein_coding	protein_coding	4	44	2	1.69566	2.207385	2.71911	0.0453922	0.0189489	0.164236	0.108861
chr12	101828258	101828358	5398957	0	-	0.42	(0.408,0.44]	chr12	514990	172	INTRON	INTRON	GNPTAB	ENSG00000111670.16	ENST00000299314.12:ENST00000549940.5:ENST00000647144.1:ENST00000392919.4:ENST00000549165.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	44	2	1.69566	2.207385	2.71911	0.0453922	0.0189489	0.164236	0.108861
chr7	128765367	128765466	3408645	0	+	0.414141	(0.408,0.44]	chr7	318457	39	INTRON	INTRON	CALU	ENSG00000128595.17	ENST00000535011.6:ENST00000542996.6:ENST00000249364.9:ENST00000449187.6:ENST00000479257.5:ENST00000493278.1	protein_coding	protein_coding	protein_coding	protein_coding	4	44	2	1.69566	2.207385	2.71911	0.0453922	0.0189489	0.164236	0.108861
chr8	27337876	27337976	3719908	0	+	0.41	(0.408,0.44]	chr8	345640	106	INTRON	INTRON	PTK2B	ENSG00000120899.18	ENST00000397501.5:ENST00000522338.5:ENST00000521164.5:ENST00000346049.10:ENST00000420218.3:ENST00000522517.5	protein_coding	protein_coding	protein_coding	protein_coding	4	44	2	1.69566	2.207385	2.71911	0.0453922	0.0189489	0.164236	0.108861
chr16	89581761	89581859	6420982	0	+	0.530612	(0.515,0.57]	chr16	616342	24	INTRON	INTRON	CPNE7	ENSG00000178773.15	ENST00000319518.13:ENST00000268720.9:ENST00000525982.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	61	2	2.17039	2.20736	2.24433	0.00900252	0.00725078	0.0851009	0.072984
chr3	186971081	186971181	1586582	0	+	0.53	(0.515,0.57]	chr3	164332	68	INTRON	INTRON	ST6GAL1	ENSG00000073849.16	ENST00000676786.1:ENST00000169298.8:ENST00000457772.6:ENST00000455441.5:ENST00000427315.5:ENST00000677292.1:ENST00000458216.5:ENST00000430309.5:ENST00000417392.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	58	2	1.53845	2.2073549999999997	2.87626	0.0475376	0.00136224	0.153019	0.0339121
chr14	30987179	30987279	5857481	0	-	0.51	(0.476,0.515]	chr14	556508	228	INTRON	INTRON	STRN3	ENSG00000196792.12	ENST00000355683.9:ENST00000357479.10:ENST00000555358.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	82	2	1.63187	2.20734	2.78281	0.037661	6.29551e-4	0.14058	0.0226349
chr3	179612470	179612569	1567808	0	+	0.484848	(0.476,0.515]	chr3	162257	43	INTRON	INTRON	NDUFB5	ENSG00000136521.13	ENST00000488002.5:ENST00000611971.4:ENST00000493866.5:ENST00000259037.8:ENST00000472629.5:ENST00000468210.5:ENST00000359944.10:ENST00000477177.1:ENST00000482604.5:ENST00000480374.1:ENST00000496904.5:ENST00000473500.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	59	2	1.91525	2.20733	2.49941	0.0232571	0.00811651	0.127416	0.0766625
chr9	124760027	124760127	4349103	0	-	0.49	(0.476,0.515]	chr9	399261	263	INTRON	INTRON	NR6A1	ENSG00000148200.17	ENST00000487099.7:ENST00000373584.7:ENST00000416460.6:ENST00000344523.8	protein_coding	protein_coding	protein_coding	protein_coding	5	59	2	1.91525	2.20733	2.49941	0.0232571	0.00811651	0.127416	0.0766625
chr15	50336300	50336400	6171683	0	-	0.37	(0.35,0.378]	chr15	588159	91	INTRON	INTRON	GABPB1	ENSG00000104064.18	ENST00000380877.8:ENST00000220429.12:ENST00000543881.5:ENST00000396464.7:ENST00000429662.6:ENST00000359031.8:ENST00000560825.5:ENST00000558970.2	protein_coding	protein_coding	protein_coding	protein_coding	4	48	2	1.87586	2.20721	2.53856	0.0326077	0.0268864	0.135275	0.133687
chr15	43750000	43750100	6012072	0	+	0.34	(0.32,0.35]	chr15	572614	4	SS3_PROX	SS3_PROX:INTRON	PDIA3	ENSG00000167004.14	ENST00000687794.1:ENST00000686402.1:ENST00000686175.1:ENST00000687211.1:ENST00000684837.1:ENST00000685864.1:ENST00000691274.1:ENST00000686314.1:ENST00000686929.1:ENST00000300289.10:ENST00000688851.1:ENST00000687167.1:ENST00000688652.1:ENST00000693281.1:ENST00000691893.1:ENST00000684793.1:ENST00000692341.1:ENST00000690274.1:ENST00000690371.1:ENST00000455250.2:ENST00000687665.1:ENST00000690271.1:ENST00000692484.1:ENST00000689152.1:ENST00000687465.1:ENST00000688330.1:ENST00000469684.2:ENST00000434494.5:ENST00000446523.5:ENST00000686227.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	70	2	2.04237	2.20718	2.37199	0.0375542	0.00465833	0.140222	0.0629753
chr3	154275582	154275680	1843021	0	-	0.336735	(0.32,0.35]	chr3	185342	32	UTR3	UTR3:EXON_MRNA	DHX36	ENSG00000174953.14	ENST00000496811.6:ENST00000308361.10	protein_coding	protein_coding	protein_coding	protein_coding	5	70	2	2.04237	2.20718	2.37199	0.0375542	0.00465833	0.140222	0.0629753
chr16	30290135	30290229	6472910	0	-	0.404255	(0.378,0.408]	chr16	625663	10	INTRON	INTRON	SMG1P5	ENSG00000183604.15	ENST00000529428.5:ENST00000411546.4:ENST00000691460.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	4	51	2	2.00398	2.207175	2.41037	0.0393906	0.0100185	0.143072	0.0880217
chr18	12966880	12966979	6876349	0	+	0.343434	(0.32,0.35]	chr18	681295	20	INTRON	INTRON	SEH1L	ENSG00000085415.16	ENST00000262124.15:ENST00000399892.7:ENST00000585730.5:ENST00000589446.5:ENST00000587761.1:ENST00000588251.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	69	2	2.10695	2.2071300000000003	2.30731	0.0176772	0.0127483	0.10525	0.0987441
chr2	68184877	68184976	1145842	0	-	0.545455	(0.515,0.57]	chr2	122371	35	INTRON	INTRON	PPP3R1	ENSG00000221823.11	ENST00000234310.8:ENST00000409752.5:ENST00000409377.1	protein_coding	protein_coding	protein_coding	protein_coding	9	84	2	1.80447	2.207125	2.60978	0.00879341	0.00151689	0.084878	0.0352794
chr1	246093044	246093144	676562	0	-	0.38	(0.378,0.408]	chr1	79717	396	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000391836.3:ENST00000464398.1:ENST00000453676.5:ENST00000462422.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	51	2	2.05897	2.2071199999999997	2.35527	0.0339294	0.0121511	0.134508	0.0963966
chr17	46166543	46166643	6784605	0	-	0.39	(0.378,0.408]	chr17	669232	93	INTRON	INTRON	KANSL1	ENSG00000120071.15	ENST00000574590.6:ENST00000572904.6:ENST00000432791.7:ENST00000575318.6:ENST00000638275.1:ENST00000262419.10:ENST00000648792.1:ENST00000639531.1:ENST00000639150.1:ENST00000639853.1:ENST00000571698.2:ENST00000639375.1:ENST00000638269.1:ENST00000576248.2:ENST00000639356.1:ENST00000574655.6:ENST00000639099.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	51	2	2.05897	2.2071199999999997	2.35527	0.0339294	0.0121511	0.134508	0.0963966
chr21	44060262	44060361	7415518	0	+	0.40404	(0.378,0.408]	chr21	755816	1	INTRON	INTRON	TRAPPC10	ENSG00000160218.13	ENST00000291574.9:ENST00000422875.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	74	2	1.94906	2.207075	2.46509	0.023282	0.00287152	0.118176	0.0494641
chr4	78837185	78837285	1981997	0	+	0.45	(0.44,0.476]	chr4	198479	31	INTRON	INTRON	BMP2K	ENSG00000138756.19	ENST00000389010.7:ENST00000502613.3:ENST00000502871.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	66	2	1.28614	2.207065	3.12799	0.0497218	0.0050635	0.17488	0.0621733
chr10	75221270	75221370	4464448	0	+	0.32	(0.28,0.32]	chr10	411837	3	SS5_PROX	SS5_PROX:INTRON	VDAC2	ENSG00000165637.14	ENST00000543351.5:ENST00000298468.9:ENST00000472137.5:ENST00000332211.11:ENST00000313132.8:ENST00000498394.5:ENST00000447677.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	120	2	1.86858	2.207055	2.54553	0.0214814	0.00110861	0.114341	0.0305035
chr9	78029214	78029314	4271922	0	-	0.36	(0.35,0.378]	chr9	392880	1065	INTRON	INTRON	GNAQ	ENSG00000156052.11	ENST00000286548.9:ENST00000411677.1	protein_coding	protein_coding	protein_coding	protein_coding	7	82	2	1.74831	2.206995	2.66568	0.0169142	0.00496487	0.110899	0.0615009
chr2	95935744	95935844	1179163	0	-	0.39	(0.378,0.408]	chr2	126006	1	SS3_PROX	SS3_PROX:INTRON	ANKRD36C	ENSG00000174501.15	ENST00000295246.7:ENST00000456556.5:ENST00000534304.5:ENST00000528268.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	58	2	1.45934	2.2069650000000003	2.95459	0.0442931	0.00957623	0.162302	0.0820838
chr17	62529404	62529504	6653392	0	+	0.49	(0.476,0.515]	chr17	649344	47	INTRON	INTRON	TLK2	ENSG00000146872.19	ENST00000582809.5:ENST00000684213.1:ENST00000583843.5:ENST00000582195.6:ENST00000682085.1:ENST00000580705.5:ENST00000346027.10:ENST00000326270.13:ENST00000682203.1:ENST00000343388.11:ENST00000683536.1:ENST00000684440.1:ENST00000684772.1:ENST00000682274.1:ENST00000682827.1:ENST00000682075.1:ENST00000683104.1:ENST00000684012.1:ENST00000581041.5:ENST00000684553.1:ENST00000683737.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	56	2	1.52755	2.206925	2.8863	0.0355377	0.0111679	0.151404	0.0877435
chr2	20346117	20346216	1076740	0	-	0.40404	(0.378,0.408]	chr2	115047	127	INTRON	INTRON	PUM2	ENSG00000055917.16	ENST00000361078.7:ENST00000442400.5:ENST00000420234.5:ENST00000429419.6:ENST00000432105.5:ENST00000446940.5:ENST00000424110.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	52	2	1.51223	2.206925	2.90162	0.051139	0.0113157	0.176696	0.0886121
chr16	67786261	67786360	6505480	0	-	0.373737	(0.35,0.378]	chr16	629654	138	INTRON	INTRON	RANBP10	ENSG00000141084.12	ENST00000317506.8:ENST00000448631.6:ENST00000602506.5:ENST00000602677.5:ENST00000602525.5:ENST00000602638.5:ENST00000602815.5:ENST00000602887.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	63	2	1.74831	2.20689	2.66547	0.0233639	0.0169142	0.118323	0.110899
chr12	76069591	76069689	5370071	0	-	0.387755	(0.378,0.408]	chr12	512322	2	INTRON	INTRON	NAP1L1	ENSG00000187109.15	ENST00000618691.5:ENST00000393263.7:ENST00000431879.7:ENST00000547773.5:ENST00000544816.5:ENST00000542344.5:ENST00000535020.6:ENST00000549596.5:ENST00000552342.5:ENST00000548044.5:ENST00000550934.5:ENST00000551992.5:ENST00000548273.5:ENST00000551600.5:ENST00000547704.5:ENST00000549988.5:ENST00000547479.5:ENST00000549479.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	17	183	2	1.74826	2.20683	2.6654	0.00341925	3.5967e-4	0.0539802	0.0175552
chr7	111287492	111287592	3621357	0	-	0.27	[0,0.28]	chr7	337093	3236	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	121	2	1.60899	2.2068	2.80461	0.0503341	9.57163e-4	0.156383	0.0284484
chr8	99320834	99320934	3814360	0	+	0.41	(0.408,0.44]	chr8	353192	452	INTRON	INTRON	VPS13B	ENSG00000132549.20	ENST00000496144.5:ENST00000683334.1:ENST00000357162.7:ENST00000358544.7:ENST00000683619.1:ENST00000683869.1:ENST00000682153.1:ENST00000682358.1:ENST00000682145.1:ENST00000355155.6:ENST00000682234.1:ENST00000683486.1:ENST00000522802.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	37	2	1.74775	2.2067699999999997	2.66579	0.0735403	0.019342	0.190238	0.119831
chr20	34439218	34439305	7259882	0	+	0.241379	[0,0.28]	chr20	737466	2	INTRON	INTRON	ITCH	ENSG00000078747.16	ENST00000374864.10:ENST00000535650.7:ENST00000670516.1:ENST00000665484.1:ENST00000664852.1:ENST00000660337.1:ENST00000262650.10:ENST00000662871.1:ENST00000665346.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	87	2	1.59412	2.20671	2.8193	0.0729426	0.00285248	0.189278	0.0494641
chr17	27111810	27111910	6579943	0	+	0.28	[0,0.28]	chr17	639586	150	INTRON	INTRON	ENSG00000285822	ENSG00000285822.1	ENST00000649401.1	lncRNA	lncRNA	lncRNA	lncRNA	9	153	2	1.80301	2.206695	2.61038	0.0217271	0.00102823	0.11491	0.0294094
chr9	83969349	83969380	4274216	0	-	0.322581	(0.32,0.35]	chr9	393114	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	HNRNPK	ENSG00000165119.21	ENST00000376281.8:ENST00000376263.8:ENST00000351839.7:ENST00000360384.9:ENST00000493362.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	59	2	1.72405	2.20663	2.68921	0.0275418	0.0230336	0.137011	0.118056
chr12	24922853	24922953	5297650	0	-	0.34	(0.32,0.35]	chr12	503884	199	INTRON	INTRON	BCAT1	ENSG00000060982.15	ENST00000261192.12:ENST00000342945.9:ENST00000539780.5:ENST00000546285.1	protein_coding	protein_coding	protein_coding	protein_coding	6	65	2	1.42176	2.206505	2.99125	0.0511006	0.00958447	0.176696	0.0820838
chr12	48689352	48689451	5319286	0	-	0.363636	(0.35,0.378]	chr12	506382	10	UTR3	UTR3:EXON_MRNA	CCNT1	ENSG00000129315.11	ENST00000618666.4:ENST00000261900.8	protein_coding	protein_coding	protein_coding	protein_coding	10	124	2	1.83476	2.20641	2.57806	0.0107492	7.61742e-4	0.086626	0.0253498
chr12	110290924	110291023	5226195	0	+	0.545455	(0.515,0.57]	chr12	495234	78	INTRON	INTRON	ATP2A2	ENSG00000174437.18	ENST00000552636.2:ENST00000308664.10:ENST00000539276.7:ENST00000377685.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	63	2	1.44468	2.20641	2.96814	0.0231071	0.00756432	0.12687	0.0749063
chr6	15246350	15246444	2822947	0	+	0.43617	(0.408,0.44]	chr6	265182	4	UTR5	UTR5:EXON_MRNA	JARID2	ENSG00000008083.14	ENST00000341776.7	protein_coding	protein_coding	protein_coding	protein_coding	14	156	2	2.17484	2.20639	2.23794	0.003472	4.24062e-4	0.052042	0.018441
chr17	59838203	59838294	6643715	0	+	0.417582	(0.408,0.44]	chr17	648782	4	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	VMP1	ENSG00000062716.13	ENST00000262291.9:ENST00000592619.5:ENST00000591877.1:ENST00000591782.1:ENST00000588617.1:ENST00000592790.1:ENST00000587470.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	46	468	2	1.93035	2.2063	2.48225	2.31509e-4	7.57196e-5	0.0134443	0.00777694
chr13	28142485	28142585	5460868	0	+	0.34	(0.32,0.35]	chr13	523235	30	INTRON	INTRON	PAN3	ENSG00000152520.14	ENST00000503791.5:ENST00000380958.8:ENST00000399613.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	79	2	1.88141	2.20624	2.53107	0.0161424	0.00860484	0.109464	0.0784134
chr2	131089328	131089428	1229052	0	-	0.29	(0.28,0.32]	chr2	130994	63	INTRON	INTRON	FAM168B	ENSG00000152102.18	ENST00000389915.4:ENST00000409185.5	protein_coding	protein_coding	protein_coding	protein_coding	6	71	2	1.49395	2.2062299999999997	2.91851	0.0423482	0.0130672	0.161744	0.093385
chr1	6580807	6580905	5318	0	+	0.571429	(0.57,1]	chr1	1023	2	CDS	CDS:EXON_MRNA:INTRON	ZBTB48	ENSG00000204859.13	ENST00000377674.9:ENST00000319084.9:ENST00000435905.5:ENST00000488936.1	protein_coding	protein_coding	protein_coding	protein_coding	5	31	2	1.98953	2.206175	2.42282	0.0182848	0.00879576	0.115629	0.0790073
chr7	121212021	121212121	3395889	0	+	0.42	(0.408,0.44]	chr7	317781	620	INTRON	INTRON	CPED1	ENSG00000106034.18	ENST00000310396.10:ENST00000450913.6:ENST00000423795.5:ENST00000466055.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	60	2	1.96534	2.2060400000000002	2.44674	0.0216499	0.00868283	0.11491	0.0842798
chr10	125091611	125091710	4713646	0	-	0.545455	(0.515,0.57]	chr10	434903	29	INTRON	INTRON	CTBP2	ENSG00000175029.17	ENST00000337195.9:ENST00000411419.6:ENST00000494626.6:ENST00000531469.5:ENST00000460976.5:ENST00000476817.1:ENST00000530884.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	39	2	1.75372	2.20603	2.65834	0.0386904	0.0187418	0.14279	0.117523
chr1	246550812	246550912	680830	0	-	0.45	(0.44,0.476]	chr1	79805	2	SS5_PROX	SS5_PROX:INTRON	TFB2M	ENSG00000162851.8	ENST00000366514.5	protein_coding	protein_coding	protein_coding	protein_coding	6	68	2	1.70242	2.20601	2.7096	0.0282713	0.00376205	0.137721	0.0539118
chr13	20853137	20853236	5555846	0	-	0.444444	(0.44,0.476]	chr13	531006	89	INTRON	INTRON	XPO4	ENSG00000132953.18	ENST00000255305.11	protein_coding	protein_coding	protein_coding	protein_coding	6	68	2	1.70242	2.20601	2.7096	0.0282713	0.00376205	0.137721	0.0539118
chr2	58206683	58206781	1126400	0	-	0.346939	(0.32,0.35]	chr2	120929	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	FANCL	ENSG00000115392.13	ENST00000696400.1:ENST00000403295.8:ENST00000696492.1:ENST00000427708.7:ENST00000696314.1:ENST00000696315.1:ENST00000696454.1:ENST00000696508.1:ENST00000696548.1:ENST00000696542.1:ENST00000696432.1:ENST00000696319.1:ENST00000403676.6:ENST00000696433.1:ENST00000696434.1:ENST00000696499.1:ENST00000696564.1:ENST00000402135.8:ENST00000696546.1:ENST00000233741.9:ENST00000696316.1:ENST00000696378.1:ENST00000696435.1:ENST00000696493.1:ENST00000696543.1:ENST00000696544.1:ENST00000696545.1:ENST00000696565.1:ENST00000696620.1:ENST00000696621.1:ENST00000696635.1:ENST00000696364.1:ENST00000696634.1:ENST00000696317.1:ENST00000696622.1:ENST00000696467.1:ENST00000696547.1:ENST00000449070.6:ENST00000696305.1:ENST00000417361.2:ENST00000696338.1:ENST00000696361.1:ENST00000696318.1:ENST00000696371.1:ENST00000696409.1:ENST00000696410.1:ENST00000696455.1:ENST00000696468.1:ENST00000696527.1:ENST00000696567.1:ENST00000696324.1:ENST00000696566.1:ENST00000696623.1:ENST00000446381.6:ENST00000696469.1:ENST00000696624.1:ENST00000696411.1:ENST00000470506.2:ENST00000696358.1:ENST00000696373.1:ENST00000696394.1:ENST00000696320.1:ENST00000696395.1:ENST00000696341.1:ENST00000696340.1:ENST00000696374.1:ENST00000696396.1:ENST00000696342.1:ENST00000696325.1:ENST00000696399.1:ENST00000696398.1:ENST00000696306.1:ENST00000696397.1:ENST00000696360.1:ENST00000696344.1:ENST00000696343.1:ENST00000696637.1:ENST00000696362.1:ENST00000696528.1:ENST00000696497.1:ENST00000696326.1:ENST00000696625.1:ENST00000696510.1:ENST00000696438.1:ENST00000696496.1:ENST00000696509.1:ENST00000696569.1:ENST00000696457.1:ENST00000696458.1:ENST00000696473.1:ENST00000696495.1:ENST00000696415.1:ENST00000696472.1:ENST00000696494.1:ENST00000696459.1:ENST00000696498.1:ENST00000696416.1:ENST00000696530.1:ENST00000696460.1:ENST00000696570.1:ENST00000696531.1:ENST00000696307.1:ENST00000696345.1:ENST00000696377.1:ENST00000696417.1:ENST00000696594.1:ENST00000696595.1:ENST00000696379.1:ENST00000696346.1:ENST00000696380.1:ENST00000696347.1:ENST00000696461.1:ENST00000696596.1:ENST00000696549.1:ENST00000696597.1:ENST00000696550.1:ENST00000696598.1:ENST00000696321.1:ENST00000696476.1:ENST00000696477.1:ENST00000696511.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	69	2	2.06478	2.20594	2.3471	0.0156413	0.0147778	0.106702	0.101393
chr10	45972730	45972830	4430383	0	+	0.41	(0.408,0.44]	chr10	408460	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	TIMM23	ENSG00000265354.4	ENST00000580018.4	protein_coding	protein_coding	protein_coding	protein_coding	4	44	2	1.6306	2.20591	2.78122	0.0544158	0.015812	0.182272	0.101453
chr8	23533913	23534012	3715147	0	+	0.414141	(0.408,0.44]	chr8	345217	21	INTRON	INTRON	SLC25A37	ENSG00000147454.14	ENST00000519973.6:ENST00000290075.10:ENST00000417331.6:ENST00000518881.5:ENST00000520654.1:ENST00000523930.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	20	225	2	2.19818	2.2058799999999996	2.21358	8.41817e-4	2.95517e-4	0.0267082	0.0153804
chr2	177251928	177252028	1275719	0	-	0.49	(0.476,0.515]	chr2	134708	173	INTRON	INTRON	NFE2L2	ENSG00000116044.16	ENST00000397063.8:ENST00000464747.5:ENST00000397062.8:ENST00000446151.6:ENST00000449627.1:ENST00000448782.5:ENST00000430047.1:ENST00000586532.5:ENST00000421929.5:ENST00000423513.5:ENST00000588123.1:ENST00000477534.1:ENST00000462023.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	13	128	2	1.82064	2.20586	2.59108	0.00325427	0.00196853	0.0524329	0.0402283
chr15	92900460	92900551	6103687	0	+	0.450549	(0.44,0.476]	chr15	581380	4	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	ENSG00000279765:CHD2	ENSG00000279765.3:ENSG00000173575.22	ENST00000629685.2:ENST00000630790.1:ENST00000626874.2:ENST00000627622.1:ENST00000394196.9:ENST00000635856.1:ENST00000420239.7:ENST00000628375.2:ENST00000629346.2:ENST00000625990.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	37	377	2	1.86749	2.20582	2.54415	4.81509e-4	7.19455e-5	0.0199261	0.00762879
chr5	55330199	55330298	2355313	0	+	0.454545	(0.44,0.476]	chr5	227152	9	INTRON	INTRON	MTREX	ENSG00000039123.16	ENST00000230640.10:ENST00000506750.5:ENST00000504997.1:ENST00000505565.5:ENST00000502953.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	59	2	1.98146	2.20571	2.42996	0.0186013	0.0104804	0.117264	0.0855777
chr11	3706144	3706244	4894237	0	-	0.41	(0.408,0.44]	chr11	458809	3	SS5_PROX	SS5_PROX:INTRON	NUP98	ENSG00000110713.17	ENST00000359171.8:ENST00000324932.12:ENST00000650171.1:ENST00000355260.7:ENST00000429801.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	56	2	1.35436	2.205705	3.05705	0.0603719	0.00658331	0.19151	0.0701901
chr11	3754904	3755004	4894736	0	-	0.36	(0.35,0.378]	chr11	458876	11	INTRON	INTRON	NUP98	ENSG00000110713.17	ENST00000359171.8:ENST00000324932.12:ENST00000650171.1:ENST00000355260.7:ENST00000397004.8:ENST00000397007.8:ENST00000527104.5:ENST00000529379.1:ENST00000397013.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	19	235	2	1.96004	2.205695	2.45135	0.00317741	1.03637e-4	0.0503705	0.00863144
chr12	132101399	132101499	5250358	0	+	0.53	(0.515,0.57]	chr12	499298	95	INTRON	INTRON	EP400P1	ENSG00000185684.16	ENST00000407361.8:ENST00000446190.5:ENST00000690966.1:ENST00000689047.1:ENST00000454179.7:ENST00000689533.1:ENST00000688036.1:ENST00000688136.1:ENST00000488030.5:ENST00000389560.6:ENST00000689403.1:ENST00000443539.6:ENST00000392352.5:ENST00000539205.5:ENST00000332441.7	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	7	64	2	1.77888	2.2056899999999997	2.6325	0.0139834	0.00439001	0.10247	0.0585064
chr15	72479809	72479908	6059215	0	+	0.373737	(0.35,0.378]	chr15	576852	44	INTRON	INTRON	ARIH1	ENSG00000166233.15	ENST00000379887.9:ENST00000570085.5:ENST00000564062.1:ENST00000567762.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	10	126	2	2.08628	2.205655	2.32503	0.00561176	0.0014174	0.0653419	0.0346457
chr9	131138483	131138582	4215755	0	+	0.454545	(0.44,0.476]	chr9	386544	21	INTRON	INTRON	NUP214	ENSG00000126883.19	ENST00000695497.1:ENST00000695498.1:ENST00000695496.1:ENST00000695495.1:ENST00000695494.1:ENST00000695493.1:ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000525561.2:ENST00000651022.1:ENST00000695499.1:ENST00000530843.1:ENST00000530863.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	125	2	1.62573	2.20559	2.78545	0.0146931	3.37024e-4	0.106558	0.0170609
chr15	63771124	63771223	6200273	0	-	0.444444	(0.44,0.476]	chr15	591427	66	INTRON	INTRON	HERC1	ENSG00000103657.14	ENST00000443617.7:ENST00000561400.1:ENST00000559886.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	49	2	1.96602	2.20558	2.44514	0.0426807	0.0087381	0.148082	0.0845538
chrX	123875935	123876035	7716345	0	+	0.39	(0.378,0.408]	chrX	789403	150	INTRON	INTRON	XIAP	ENSG00000101966.13	ENST00000422098.5:ENST00000481776.5:ENST00000434753.7:ENST00000497906.5:ENST00000468691.5:ENST00000430625.1:ENST00000371199.8:ENST00000497640.1:ENST00000355640.3:ENST00000468503.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	48	2	2.18512	2.2055100000000003	2.2259	0.0662381	0.00902136	0.181924	0.0851259
chr6	17652426	17652525	3065657	0	-	0.323232	(0.32,0.35]	chr6	284824	1	INTRON	INTRON	NUP153	ENSG00000124789.12	ENST00000613258.4:ENST00000537253.5:ENST00000262077.3	protein_coding	protein_coding	protein_coding	protein_coding	9	105	2	1.81244	2.205495	2.59855	0.00748885	0.00682041	0.0772645	0.0712518
chr11	47235701	47235797	4787956	0	+	0.364583	(0.35,0.378]	chr11	442882	4	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	DDB2	ENSG00000134574.12	ENST00000256996.9:ENST00000378601.7:ENST00000612309.4:ENST00000617022.4:ENST00000616278.4:ENST00000378600.7:ENST00000378603.7:ENST00000617847.4:ENST00000614394.1:ENST00000620515.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	78	2	1.87726	2.20548	2.5337	0.0297629	0.0022093	0.12908	0.0435144
chr20	38066656	38066756	7269213	0	+	0.56	(0.515,0.57]	chr20	738711	4	SS5_PROX	SS5_PROX:INTRON	RPRD1B	ENSG00000101413.12	ENST00000462548.6:ENST00000373433.9:ENST00000449186.2:ENST00000618318.1:ENST00000614670.1:ENST00000622494.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	18	172	2	2.02336	2.2054799999999997	2.3876	0.00149303	1.34186e-4	0.03506	0.00998237
chr1	28917571	28917671	58986	0	+	0.53	(0.515,0.57]	chr1	7621	24	INTRON	INTRON	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000647918.1:ENST00000646800.1:ENST00000644342.1:ENST00000646189.1:ENST00000482464.6:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000646260.1:ENST00000373798.5:ENST00000644600.1:ENST00000649674.1:ENST00000643173.1:ENST00000343067.9:ENST00000644780.1:ENST00000650265.1:ENST00000648181.1:ENST00000643604.1:ENST00000648891.1:ENST00000373797.2:ENST00000349460.9:ENST00000645184.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	42	2	2.01737	2.2054400000000003	2.39351	0.0352218	0.0100431	0.137535	0.0881096
chr7	106775036	106775118	3376066	0	+	0.463415	(0.44,0.476]	chr7	316119	2	EXON_LNCRNA	EXON_LNCRNA	LINC02577	ENSG00000228742.11	ENST00000650196.1:ENST00000658697.1:ENST00000490162.3:ENST00000602761.2:ENST00000659396.1:ENST00000659665.1:ENST00000655590.1:ENST00000470135.5	lncRNA	lncRNA	lncRNA	lncRNA	4	49	2	2.13779	2.205415	2.27304	0.0264596	0.0158915	0.122506	0.109464
chr8	100936446	100936545	4005813	0	-	0.474747	(0.44,0.476]	chr8	366668	15	INTRON	INTRON	YWHAZ	ENSG00000164924.18	ENST00000395958.6:ENST00000395957.6:ENST00000457309.2:ENST00000395956.7:ENST00000353245.7:ENST00000521309.5:ENST00000522542.5:ENST00000395953.6:ENST00000395948.6:ENST00000395951.7:ENST00000419477.6:ENST00000521607.5:ENST00000480304.5:ENST00000518736.5:ENST00000517727.5:ENST00000521328.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	49	2	2.13779	2.205415	2.27304	0.0264596	0.0158915	0.122506	0.109464
chr3	194414236	194414336	1890438	0	-	0.47	(0.44,0.476]	chr3	189101	5	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	ATP13A3	ENSG00000133657.17	ENST00000687055.1:ENST00000645538.1:ENST00000645319.2:ENST00000690810.1:ENST00000429136.7:ENST00000645621.1:ENST00000691700.1:ENST00000461660.2:ENST00000685123.1:ENST00000642744.2:ENST00000439040.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	50	2	1.43625	2.20538	2.97451	0.063142	0.00853825	0.197183	0.0780043
chr14	101872341	101872440	5819619	0	+	0.515152	(0.476,0.515]	chr14	551879	151	INTRON	INTRON	PPP2R5C	ENSG00000078304.20	ENST00000694906.1:ENST00000422945.6:ENST00000328724.9:ENST00000350249.7:ENST00000557621.5:ENST00000556307.5:ENST00000553730.5:ENST00000334743.9:ENST00000445439.7:ENST00000557095.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	14	132	2	1.21789	2.20534	3.19279	0.041607	6.57024e-5	0.146687	0.0067007
chr1	89839758	89839857	159711	0	+	0.393939	(0.378,0.408]	chr1	17274	56	INTRON	INTRON	LRRC8D	ENSG00000171492.14	ENST00000525774.5:ENST00000337338.9:ENST00000394593.7:ENST00000532201.5	protein_coding	protein_coding	protein_coding	protein_coding	5	62	2	2.05897	2.205325	2.35168	0.0339294	0.0046563	0.134508	0.0629753
chr8	140779212	140779312	4077832	0	-	0.38	(0.378,0.408]	chr8	370465	79	INTRON	INTRON	PTK2	ENSG00000169398.20	ENST00000696786.1:ENST00000522684.5:ENST00000395218.3:ENST00000519654.5:ENST00000521059.5:ENST00000517887.5:ENST00000519993.5:ENST00000340930.7:ENST00000523539.5:ENST00000519419.5:ENST00000524202.5:ENST00000521986.5:ENST00000521250.5:ENST00000521981.5:ENST00000523746.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	62	2	2.05897	2.205325	2.35168	0.0339294	0.0046563	0.134508	0.0629753
chr19	54450889	54450989	7099344	0	+	0.56	(0.515,0.57]	chr19	711970	2	SS3_PROX	SS3_PROX:INTRON	LENG8	ENSG00000167615.17	ENST00000616932.4:ENST00000439657.5:ENST00000326764.10:ENST00000376514.6:ENST00000436479.1:ENST00000443957.5	protein_coding	protein_coding	protein_coding	protein_coding	4	42	2	2.15051	2.205315	2.26012	0.0238113	0.0160033	0.118889	0.109464
chr7	150265653	150265753	3673071	0	-	0.3	(0.28,0.32]	chr7	340876	162	INTRON	INTRON	ACTR3C	ENSG00000106526.11	ENST00000478393.5:ENST00000683684.1:ENST00000252071.8	protein_coding	protein_coding	protein_coding	protein_coding	9	133	2	1.93143	2.205295	2.47916	0.0121651	0.0015115	0.0910127	0.0360297
chr7	105041523	105041622	3374897	0	+	0.474747	(0.44,0.476]	chr7	315877	1	INTRON	INTRON	KMT2E	ENSG00000005483.22	ENST00000622386.2:ENST00000257745.9:ENST00000334884.9:ENST00000311117.8:ENST00000478990.5:ENST00000495267.5:ENST00000476671.5:ENST00000667857.1:ENST00000474203.5:ENST00000482560.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	13	137	2	1.8855	2.2052899999999998	2.52508	0.00287036	0.00121905	0.0494641	0.0319984
chr1	182844633	182844733	273030	0	+	0.47	(0.44,0.476]	chr1	31871	8	INTRON	INTRON	DHX9	ENSG00000135829.17	ENST00000367549.4:ENST00000483416.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	82	2	1.49801	2.2052650000000003	2.91252	0.0300375	0.00164027	0.142135	0.0369207
chr2	151461389	151461477	893747	0	+	0.465909	(0.44,0.476]	chr2	99017	1	SS5_PROX	SS5_PROX:INTRON	RIF1	ENSG00000080345.18	ENST00000453091.6:ENST00000428287.6:ENST00000444746.7:ENST00000243326.9:ENST00000430328.6	protein_coding	protein_coding	protein_coding	protein_coding	17	189	2	1.88954	2.20526	2.52098	0.00308121	1.61315e-4	0.0496527	0.010955
chr7	12389956	12390054	3485301	0	-	0.5	(0.476,0.515]	chr7	325964	2	INTRON	INTRON	VWDE	ENSG00000146530.15	ENST00000275358.8:ENST00000452576.6:ENST00000521169.5:ENST00000326715.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	57	2	1.93099	2.20524	2.47949	0.0326974	0.0140312	0.145164	0.0959618
chr16	81535384	81535484	6405905	0	+	0.41	(0.408,0.44]	chr16	615031	395	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6	protein_coding	protein_coding	protein_coding	protein_coding	6	68	2	2.04842	2.2051350000000003	2.36185	0.0133164	0.00797555	0.094512	0.0798772
chr7	10624849	10624949	3483028	0	-	0.3	(0.28,0.32]	chr7	325772	629	INTRON	INTRON	MGC4859	ENSG00000283117.1	ENST00000634803.1	lncRNA	lncRNA	lncRNA	lncRNA	3	46	2	2.08149	2.2051	2.32871	0.0581621	0.031124	0.167723	0.143644
chr3	12579125	12579224	1368106	0	+	0.484848	(0.476,0.515]	chr3	144101	20	INTRON	INTRON	MKRN2	ENSG00000075975.17	ENST00000677816.1:ENST00000677941.1:ENST00000676544.1:ENST00000677237.1:ENST00000679143.1:ENST00000676701.1:ENST00000170447.12:ENST00000411987.5:ENST00000448482.1:ENST00000677142.1:ENST00000676541.1:ENST00000677798.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	84	2	1.83961	2.205095	2.57058	0.0314489	7.29232e-4	0.13151	0.0246094
chr12	110580012	110580112	5410460	0	-	0.43	(0.408,0.44]	chr12	516631	277	INTRON	INTRON	PPTC7	ENSG00000196850.6	ENST00000354300.5	protein_coding	protein_coding	protein_coding	protein_coding	3	39	2	2.11447	2.205085	2.2957	0.0516458	0.0285207	0.176696	0.12666
chr16	23471845	23471943	6464179	0	-	0.428571	(0.408,0.44]	chr16	623825	13	INTRON	INTRON	GGA2	ENSG00000103365.15	ENST00000309859.8:ENST00000567468.5	protein_coding	protein_coding	protein_coding	protein_coding	3	39	2	2.11447	2.205085	2.2957	0.0516458	0.0285207	0.176696	0.12666
chr5	180852460	180852560	2783470	0	-	0.54	(0.515,0.57]	chr5	262835	4	SS3_PROX	SS3_PROX:INTRON	ZFP62	ENSG00000196670.14	ENST00000506377.5:ENST00000502412.2:ENST00000512132.5:ENST00000504225.1:ENST00000506439.5:ENST00000509066.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	38	2	1.49871	2.2050549999999998	2.9114	0.0770828	0.00826019	0.196285	0.0813266
chr20	47287784	47287879	7348815	0	-	0.484211	(0.476,0.515]	chr20	749312	1	INTRON	INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000467200.6:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000468376.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	40	440	2	2.04079	2.205005	2.36922	3.27475e-4	4.47539e-5	0.0167072	0.00543445
chr4	70943974	70944073	1970922	0	+	0.262626	[0,0.28]	chr4	197577	7	INTRON	INTRON	MOB1B	ENSG00000173542.9	ENST00000502869.5:ENST00000509041.5:ENST00000309395.7:ENST00000396051.2:ENST00000511449.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	53	2	2.20073	2.205	2.20927	0.0794763	0.0235708	0.19979	0.128907
chr4	159247689	159247789	2074955	0	+	0.28	[0,0.28]	chr4	205218	35	INTRON	INTRON	RAPGEF2	ENSG00000109756.10	ENST00000644474.1:ENST00000691494.1:ENST00000505478.5:ENST00000504604.5:ENST00000644902.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	53	2	2.20073	2.205	2.20927	0.0794763	0.0235708	0.19979	0.128907
chr5	36893488	36893588	2338597	0	+	0.28	[0,0.28]	chr5	225949	71	INTRON	INTRON	NIPBL	ENSG00000164190.19	ENST00000282516.13:ENST00000448238.2:ENST00000652901.1	protein_coding	protein_coding	protein_coding	protein_coding	3	53	2	2.20073	2.205	2.20927	0.0794763	0.0235708	0.19979	0.128907
chr8	108244057	108244156	4023231	0	-	0.222222	[0,0.28]	chr8	367690	7	EXON_MRNA	EXON_MRNA:INTRON	EIF3E	ENSG00000104408.11	ENST00000678042.1:ENST00000678773.1:ENST00000677409.1:ENST00000676892.1:ENST00000523674.2:ENST00000677674.1:ENST00000220849.10:ENST00000678937.1:ENST00000677084.1:ENST00000676706.1:ENST00000518100.6:ENST00000677040.1:ENST00000676698.1:ENST00000522352.6:ENST00000521297.2:ENST00000519030.6:ENST00000519627.2:ENST00000518345.2:ENST00000522445.6:ENST00000678334.1:ENST00000678023.1:ENST00000678797.1:ENST00000677614.1:ENST00000676642.1:ENST00000677965.1:ENST00000678901.1:ENST00000678243.1:ENST00000676663.1:ENST00000679198.1:ENST00000678004.1:ENST00000678881.1:ENST00000677590.1:ENST00000677272.1:ENST00000677746.1:ENST00000677447.1:ENST00000676548.1:ENST00000676487.1:ENST00000521440.6:ENST00000518442.5:ENST00000522887.1:ENST00000518634.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	53	2	2.20073	2.205	2.20927	0.0794763	0.0235708	0.19979	0.128907
chr9	19101230	19101329	4236587	0	-	0.59596	(0.57,1]	chr9	389435	41	INTRON	INTRON	HAUS6	ENSG00000147874.11	ENST00000380502.8	protein_coding	protein_coding	protein_coding	protein_coding	4	24	2	1.74185	2.20493	2.66801	0.0401765	0.0169968	0.143911	0.110899
chr12	94358313	94358413	5389079	0	-	0.4	(0.378,0.408]	chr12	513815	223	INTRON	INTRON	CEP83	ENSG00000173588.16	ENST00000397809.10:ENST00000339839.9:ENST00000547232.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	62	2	1.89251	2.20492	2.51733	0.0251428	0.00808319	0.133404	0.0766625
chr1	39363569	39363668	77551	0	+	0.373737	(0.35,0.378]	chr1	9959	15	INTRON	INTRON	MACF1	ENSG00000127603.32	ENST00000361689.7:ENST00000567887.5:ENST00000372915.8:ENST00000564288.6:ENST00000671089.2:ENST00000372925.6:ENST00000476350.1:ENST00000289893.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	62	2	2.1617	2.204895	2.24809	0.0771502	0.00361961	0.196285	0.0554656
chr1	28740302	28740398	58379	0	+	0.427083	(0.408,0.44]	chr1	7594	1	EXON_LNCRNA	EXON_LNCRNA:INTRON	YTHDF2	ENSG00000198492.16	ENST00000542507.5:ENST00000474884.5:ENST00000373812.8:ENST00000541996.5:ENST00000478283.5:ENST00000496288.5:ENST00000476976.1:ENST00000475796.5:ENST00000468863.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	56	2	1.40381	2.20488	3.00595	0.0521927	0.00781452	0.177259	0.0759016
chr10	116894335	116894435	4699374	0	-	0.41	(0.408,0.44]	chr10	433605	74	INTRON	INTRON	SHTN1	ENSG00000187164.20	ENST00000355371.9:ENST00000615301.4:ENST00000260777.14:ENST00000497044.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	56	2	1.40381	2.20488	3.00595	0.0521927	0.00781452	0.177259	0.0759016
chr16	90157831	90157931	6424454	0	+	0.27	[0,0.28]	chr16	617209	200	INTRON	INTRON	FAM157C	ENSG00000260528.6	ENST00000568070.1	lncRNA	lncRNA	lncRNA	lncRNA	9	132	2	1.37121	2.2048550000000002	3.0385	0.0529612	0.00116412	0.161987	0.0314524
chr17	15520736	15520835	6732036	0	-	0.363636	(0.35,0.378]	chr17	660302	37	INTRON	INTRON	TVP23C-CDRT4:TVP23C	ENSG00000259024.6:ENSG00000175106.17	ENST00000522212.6:ENST00000557349.5:ENST00000481756.7:ENST00000518506.4:ENST00000225576.7:ENST00000581273.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	89	2	2.10109	2.20484	2.30859	0.014685	0.00276702	0.0983813	0.0486894
chr18	13045891	13045990	6877132	0	+	0.282828	(0.28,0.32]	chr18	681428	32	INTRON	INTRON	CEP192	ENSG00000101639.19	ENST00000325971.12:ENST00000506447.5:ENST00000589596.5:ENST00000513432.5:ENST00000511820.6:ENST00000510237.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	46	2	1.83771	2.2048300000000003	2.57195	0.0591725	0.0331711	0.189982	0.133994
chr17	21001067	21001165	6742727	0	-	0.469388	(0.44,0.476]	chr17	661996	16	UTR3	UTR3:EXON_MRNA	USP22	ENSG00000124422.12	ENST00000261497.9:ENST00000537526.6	protein_coding	protein_coding	protein_coding	protein_coding	4	44	2	1.87325	2.204825	2.5364	0.0309324	0.0265709	0.134088	0.13151
chr17	75212262	75212362	6674328	0	+	0.46	(0.44,0.476]	chr17	651360	2	SS5_PROX	SS5_PROX:INTRON	NUP85	ENSG00000125450.11	ENST00000583569.5:ENST00000245544.9:ENST00000583948.5:ENST00000579324.5:ENST00000449421.6:ENST00000581104.5:ENST00000579298.5:ENST00000583548.1:ENST00000577208.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	44	2	1.87325	2.204825	2.5364	0.0309324	0.0265709	0.134088	0.13151
chr17	51095284	51095384	6796762	0	-	0.44	(0.408,0.44]	chr17	671024	152	INTRON	INTRON	SPAG9	ENSG00000008294.22	ENST00000262013.12:ENST00000505279.5:ENST00000357122.8	protein_coding	protein_coding	protein_coding	protein_coding	5	53	2	1.96973	2.204805	2.43988	0.0398236	0.0108773	0.143072	0.0923273
chr6	85630987	85631086	3151327	0	-	0.535354	(0.515,0.57]	chr6	293889	65	INTRON	INTRON	ENSG00000271793:SYNCRIP	ENSG00000271793.2:ENSG00000135316.19	ENST00000682083.1:ENST00000683074.1:ENST00000681965.1:ENST00000682504.1:ENST00000682106.1:ENST00000683364.1:ENST00000683436.1:ENST00000684220.1:ENST00000683909.1:ENST00000684462.1:ENST00000616122.5:ENST00000678528.1:ENST00000676637.1:ENST00000677771.1:ENST00000355238.11:ENST00000678878.1:ENST00000677481.1:ENST00000677646.1:ENST00000676630.1:ENST00000678618.1:ENST00000676542.1:ENST00000677059.1:ENST00000444272.2:ENST00000678899.1:ENST00000369622.8:ENST00000678355.1:ENST00000676688.1:ENST00000677514.1:ENST00000678816.1:ENST00000678930.1:ENST00000678589.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	79	2	1.67702	2.2048	2.73258	0.0122403	0.00260192	0.0910127	0.0470772
chr3	60449914	60450014	1714113	0	-	0.47	(0.44,0.476]	chr3	176138	3692	INTRON	INTRON	FHIT	ENSG00000189283.10	ENST00000492590.6:ENST00000476844.5:ENST00000468189.5:ENST00000488467.5	protein_coding	protein_coding	protein_coding	protein_coding	5	52	2	1.5191	2.204785	2.89047	0.0526241	0.00955699	0.160983	0.0863913
chr17	50732760	50732860	6627100	0	+	0.58	(0.57,1]	chr17	647183	84	INTRON	INTRON	LUC7L3	ENSG00000108848.16	ENST00000625349.2:ENST00000508045.5:ENST00000508218.5:ENST00000509335.5:ENST00000506686.5:ENST00000393227.6:ENST00000504563.6:ENST00000505658.6:ENST00000240304.5:ENST00000508482.5:ENST00000505619.5:ENST00000510984.5:ENST00000507200.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	48	2	2.18579	2.204725	2.22366	0.00400391	0.00344378	0.0551303	0.0539802
chr15	38269036	38269136	5998513	0	+	0.5	(0.476,0.515]	chr15	570204	4	INTRON	INTRON	SPRED1	ENSG00000166068.13	ENST00000299084.9:ENST00000561205.1:ENST00000561317.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	37	2	1.92984	2.2046650000000003	2.47949	0.0466474	0.0326974	0.151522	0.145164
chr4	87132808	87132908	1995802	0	+	0.5	(0.476,0.515]	chr4	199139	4	SS5_PROX	SS5_PROX:INTRON	AFF1	ENSG00000172493.23	ENST00000395146.9:ENST00000544085.6:ENST00000307808.10	protein_coding	protein_coding	protein_coding	protein_coding	3	37	2	1.92984	2.2046650000000003	2.47949	0.0466474	0.0326974	0.151522	0.145164
chr5	177043129	177043223	2553138	0	+	0.5	(0.476,0.515]	chr5	243781	9	INTRON	INTRON	ZNF346	ENSG00000113761.12	ENST00000512315.5:ENST00000358149.8:ENST00000506693.5:ENST00000503425.5:ENST00000508155.5:ENST00000511834.5:ENST00000503039.1:ENST00000513587.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	37	2	1.92984	2.2046650000000003	2.47949	0.0466474	0.0326974	0.151522	0.145164
chr3	172257038	172257138	1561731	0	+	0.51	(0.476,0.515]	chr3	161582	51	INTRON	INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000469491.5:ENST00000336824.8:ENST00000416957.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	71	2	2.16306	2.20459	2.24612	0.00973468	0.00799949	0.0877284	0.0766625
chr7	119756163	119756263	3628900	0	-	0.27	[0,0.28]	chr7	337323	36	INTRON	INTRON	LINC02476	ENSG00000225546.6	ENST00000660268.1:ENST00000431071.5:ENST00000426413.2	lncRNA	lncRNA	lncRNA	lncRNA	13	203	2	1.85309	2.204575	2.55606	0.00530454	0.00226642	0.0658789	0.0425751
chr11	68106513	68106613	4972448	0	-	0.52	(0.515,0.57]	chr11	469439	90	INTRON	INTRON	CHKA	ENSG00000110721.12	ENST00000265689.9:ENST00000356135.9:ENST00000531341.1	protein_coding	protein_coding	protein_coding	protein_coding	5	43	2	1.44089	2.204515	2.96814	0.0617046	0.00756432	0.193423	0.0749063
chr16	29573821	29573921	6471338	0	-	0.52	(0.515,0.57]	chr16	625297	41	INTRON	INTRON	ENSG00000288632:SMG1P2	ENSG00000288632.1:ENSG00000205534.6	ENST00000675579.1:ENST00000566127.1	lncRNA	lncRNA	lncRNA:transcribed_unprocessed_pseudogene	lncRNA:transcribed_unprocessed_pseudogene	5	43	2	1.44089	2.204515	2.96814	0.0617046	0.00756432	0.193423	0.0749063
chr9	130876142	130876240	4215491	0	+	0.377551	(0.35,0.378]	chr9	386466	7	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000318560.6	protein_coding	protein_coding	protein_coding	protein_coding	14	174	2	1.98201	2.20446	2.42691	0.00451871	3.23801e-4	0.0595107	0.0159645
chrX	153948451	153948550	7911935	0	-	0.262626	[0,0.28]	chrX	805405	10	UTR3	UTR3:EXON_MRNA	HCFC1	ENSG00000172534.14	ENST00000310441.12:ENST00000444191.5:ENST00000369984.4	protein_coding	protein_coding	protein_coding	protein_coding	24	403	2	2.17852	2.20436	2.2302	0.00154722	5.38067e-4	0.0357939	0.0209851
chr17	75148589	75148671	6836029	0	-	0.426829	(0.408,0.44]	chr17	675481	1	CDS	CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA	JPT1	ENSG00000189159.16	ENST00000409753.8:ENST00000476258.5:ENST00000482348.5:ENST00000304834.11:ENST00000356033.8:ENST00000470924.5:ENST00000481647.5:ENST00000580380.1:ENST00000581874.1:ENST00000584079.5:ENST00000465454.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	61	2	1.94273	2.2043	2.46587	0.0456237	0.00280622	0.149888	0.0488779
chr8	102358072	102358172	4012205	0	-	0.42	(0.408,0.44]	chr8	367218	106	INTRON	INTRON	UBR5	ENSG00000104517.13	ENST00000520539.6:ENST00000220959.8:ENST00000521922.5	protein_coding	protein_coding	protein_coding	protein_coding	5	61	2	1.94273	2.2043	2.46587	0.0456237	0.00280622	0.149888	0.0488779
chr5	119117328	119117427	2460233	0	+	0.414141	(0.408,0.44]	chr5	235625	6	INTRON	INTRON	DMXL1	ENSG00000172869.15	ENST00000539542.6:ENST00000503802.5:ENST00000311085.8:ENST00000514151.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	46	2	2.13157	2.204275	2.27698	0.0583528	0.0109031	0.167723	0.0923273
chr8	26319500	26319600	3716376	0	+	0.35	(0.32,0.35]	chr8	345372	145	INTRON	INTRON	PPP2R2A	ENSG00000221914.11	ENST00000380737.8:ENST00000520329.5:ENST00000518254.5:ENST00000524169.5:ENST00000518397.5:ENST00000522535.5:ENST00000665949.1:ENST00000522150.5:ENST00000523473.5:ENST00000521095.5:ENST00000660435.1:ENST00000523925.5:ENST00000524099.5:ENST00000315985.7:ENST00000519636.5:ENST00000522482.5:ENST00000521557.5:ENST00000519439.5:ENST00000521484.5:ENST00000523964.5:ENST00000667651.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	12	126	2	1.62459	2.20425	2.78391	0.00924499	0.00347285	0.0855292	0.052042
chr8	43065602	43065701	3745943	0	+	0.353535	(0.35,0.378]	chr8	348528	10	INTRON	INTRON	FNTA	ENSG00000168522.13	ENST00000533559.5:ENST00000526755.5:ENST00000302279.8:ENST00000527153.5:ENST00000533383.5:ENST00000533998.5:ENST00000524546.5:ENST00000531266.5:ENST00000533368.1:ENST00000525699.5:ENST00000529687.5:ENST00000533336.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	61	2	1.51819	2.20411	2.89003	0.0372715	0.0122391	0.155878	0.0910127
chr8	47953119	47953219	3945689	0	-	0.44	(0.408,0.44]	chr8	361952	1	SS5_PROX	SS5_PROX:INTRON	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7	protein_coding	protein_coding	protein_coding	protein_coding	10	99	2	1.50217	2.204085	2.906	0.022351	0.00131817	0.116768	0.0333932
chr6	5261571	5261660	2792669	0	+	0.573034	(0.57,1]	chr6	263649	7	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	FARS2	ENSG00000145982.13	ENST00000324331.10:ENST00000602691.1:ENST00000648580.1:ENST00000274680.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	43	2	1.79898	2.20407	2.60916	0.0206524	0.00119055	0.122348	0.0315806
chr22	21435489	21435589	7481354	0	+	0.55	(0.515,0.57]	chr22	763209	144	INTRON	INTRON	HIC2	ENSG00000169635.10	ENST00000407464.7:ENST00000407598.2	protein_coding	protein_coding	protein_coding	protein_coding	9	84	2	1.64662	2.204055	2.7614899999999998	0.0178544	6.09302e-4	0.106151	0.0223951
chr21	7433135	7433235	7365634	0	+	0.42	(0.408,0.44]	chr21	751728	19	INTRON	INTRON	ENSG00000276077	ENSG00000276077.4	ENST00000617062.4:ENST00000625096.3:ENST00000624791.1:ENST00000624907.3:ENST00000624461.3:ENST00000625115.1	lncRNA	lncRNA	lncRNA	lncRNA	4	45	2	1.58763	2.204025	2.82042	0.0639217	0.0120121	0.177824	0.0962115
chr6	3084480	3084577	2788279	0	+	0.43299	(0.408,0.44]	chr6	263326	13	UTR3	UTR3:EXON_MRNA:INTRON	RIPK1	ENSG00000137275.16	ENST00000678809.1:ENST00000678874.1:ENST00000380409.3:ENST00000677799.1:ENST00000677261.1:ENST00000676758.1:ENST00000676995.1:ENST00000679118.1:ENST00000479389.1:ENST00000676591.1:ENST00000259808.9:ENST00000676618.1:ENST00000678084.1:ENST00000677361.1:ENST00000676965.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	45	2	1.58763	2.204025	2.82042	0.0639217	0.0120121	0.177824	0.0962115
chr2	176320998	176321098	925734	0	+	0.29	(0.28,0.32]	chr2	101688	163	INTRON	INTRON	MTX2	ENSG00000128654.14	ENST00000420864.5:ENST00000249442.11:ENST00000423461.6:ENST00000443241.5:ENST00000452865.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	76	2	1.56134	2.2040249999999997	2.84671	0.0740624	0.00216662	0.191153	0.0434015
chr5	115837427	115837527	2707889	0	-	0.38	(0.378,0.408]	chr5	254817	4	SS5_PROX	SS5_PROX:INTRON	ATG12	ENSG00000145782.13	ENST00000509910.2:ENST00000500945.2:ENST00000508464.5:ENST00000513322.5:ENST00000511984.5:ENST00000379594.7:ENST00000509598.5:ENST00000505993.5:ENST00000513167.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	53	2	1.97143	2.204	2.43657	0.0398704	0.0106733	0.161534	0.0861859
chr1	6594688	6594785	368167	0	-	0.463918	(0.44,0.476]	chr1	43248	7	UTR3	UTR3:EXON_MRNA:INTRON	KLHL21	ENSG00000162413.17	ENST00000377663.3:ENST00000377658.8:ENST00000467612.5:ENST00000496707.5:ENST00000463043.1	protein_coding	protein_coding	protein_coding	protein_coding	13	149	2	2.02036	2.203995	2.38763	0.0025344	8.0285e-4	0.0465056	0.0262369
chr20	41050314	41050414	7273721	0	+	0.43	(0.408,0.44]	chr20	739216	205	INTRON	INTRON	TOP1	ENSG00000198900.7	ENST00000361337.3:ENST00000681113.1:ENST00000681058.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	92	2	2.1226	2.203985	2.28537	0.012812	0.00158783	0.0926667	0.0367961
chr19	13842130	13842229	7143341	0	-	0.676768	(0.57,1]	chr19	721118	184	EXON_LNCRNA	EXON_LNCRNA	MIR23AHG	ENSG00000267519.6	ENST00000587762.2	lncRNA	lncRNA	lncRNA	lncRNA	4	26	2	2.02391	2.20391	2.38391	0.0339274	0.0104374	0.134508	0.0902296
chrX	103676065	103676160	7856471	0	-	0.326316	(0.32,0.35]	chrX	801073	7	UTR3	UTR3:EXON_MRNA	MORF4L2	ENSG00000123562.18	ENST00000360458.5:ENST00000441076.7:ENST00000433176.6:ENST00000451301.5	protein_coding	protein_coding	protein_coding	protein_coding	32	370	2	1.85839	2.20382	2.54925	7.97351e-4	2.68005e-4	0.0258804	0.0150023
chr11	9255283	9255383	4908973	0	-	0.56	(0.515,0.57]	chr11	460115	99	INTRON	INTRON	DENND5A	ENSG00000184014.9	ENST00000328194.8:ENST00000681203.1:ENST00000530780.2:ENST00000679999.1:ENST00000680470.1:ENST00000680554.1:ENST00000681425.1:ENST00000679568.1:ENST00000679446.1:ENST00000680294.1:ENST00000680742.1:ENST00000680885.1:ENST00000530044.5:ENST00000526707.5:ENST00000532696.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	38	2	1.88259	2.203815	2.52504	0.029342	0.0251849	0.133519	0.128055
chr1	167917546	167917643	577052	0	-	0.43299	(0.408,0.44]	chr1	69969	10	UTR3	UTR3:EXON_MRNA	MPC2	ENSG00000143158.11	ENST00000271373.9:ENST00000367846.8	protein_coding	protein_coding	protein_coding	protein_coding	5	62	2	2.19524	2.20381	2.21238	0.0193525	0.00990486	0.119831	0.0838372
chr1	1656658	1656755	360591	0	-	0.608247	(0.57,1]	chr1	41954	8	INTRON	INTRON	CDK11B	ENSG00000248333.9	ENST00000341832.11:ENST00000407249.7:ENST00000340677.9:ENST00000611150.3:ENST00000615951.4:ENST00000626918.2:ENST00000629289.2:ENST00000629312.2:ENST00000341028.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	26	2	2.17026	2.203685	2.23711	0.0220522	0.0172108	0.123836	0.104099
chr20	58998137	58998229	7359428	0	-	0.369565	(0.35,0.378]	chr20	750521	3	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CTSZ	ENSG00000101160.15	ENST00000681011.1:ENST00000680879.1:ENST00000680753.1:ENST00000681877.1:ENST00000681175.1:ENST00000681457.1:ENST00000680263.1:ENST00000681416.1:ENST00000488395.2:ENST00000217131.6:ENST00000680283.1:ENST00000681664.1:ENST00000680738.1:ENST00000680206.1:ENST00000680456.1:ENST00000681427.1:ENST00000681366.1:ENST00000680628.1:ENST00000680300.1:ENST00000680565.1:ENST00000681360.1:ENST00000680995.1:ENST00000680156.1:ENST00000679948.1:ENST00000679991.1:ENST00000679391.1:ENST00000681029.1:ENST00000503833.7:ENST00000681797.1:ENST00000680880.1:ENST00000680386.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:non_stop_decay:nonsense_mediated_decay:processed_transcript	4	54	2	2.17079	2.20365	2.23651	0.0225978	0.020879	0.124921	0.111766
chr9	92417658	92417758	4155363	0	+	0.32	(0.28,0.32]	chr9	379002	374	INTRON	INTRON	CENPP	ENSG00000188312.14	ENST00000375587.8	protein_coding	protein_coding	protein_coding	protein_coding	4	66	2	1.90263	2.203625	2.50462	0.0503272	0.0102735	0.17488	0.0850389
chr2	101276659	101276755	1199222	0	-	0.333333	(0.32,0.35]	chr2	128147	12	UTR3	UTR3:EXON_MRNA:INTRON	RNF149	ENSG00000163162.9	ENST00000424632.5:ENST00000295317.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	69	2	2.02133	2.203575	2.38582	0.017146	0.0138529	0.111072	0.0953077
chr3	177148606	177148706	1871957	0	-	0.54	(0.515,0.57]	chr3	187422	125	INTRON	INTRON	TBL1XR1	ENSG00000177565.18	ENST00000457928.7:ENST00000430069.5:ENST00000673974.1:ENST00000352800.10:ENST00000422442.6:ENST00000428970.5:ENST00000424913.5:ENST00000437738.5:ENST00000431421.5:ENST00000635794.1:ENST00000630796.2:ENST00000450267.5:ENST00000630833.2:ENST00000431674.5:ENST00000422066.5:ENST00000443315.5:ENST00000627825.2:ENST00000427349.5:ENST00000413084.5:ENST00000637137.1:ENST00000491623.2:ENST00000637544.1:ENST00000636187.1:ENST00000636912.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	64	2	1.64415	2.203575	2.763	0.0231656	0.00257143	0.127036	0.045134
chr7	121169436	121169536	3395463	0	+	0.27	[0,0.28]	chr7	317781	194	INTRON	INTRON	CPED1	ENSG00000106034.18	ENST00000310396.10:ENST00000450913.6:ENST00000423795.5:ENST00000466055.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	72	2	2.20073	2.203575	2.20642	0.0280845	0.0235708	0.128907	0.125065
chr10	74215437	74215537	4456412	0	+	0.54	(0.515,0.57]	chr10	411541	142	INTRON	INTRON	ADK	ENSG00000156110.15	ENST00000672429.1:ENST00000539909.6:ENST00000286621.7:ENST00000478611.2:ENST00000673352.1:ENST00000673310.1:ENST00000672920.1:ENST00000672394.1:ENST00000372734.5:ENST00000673027.1:ENST00000541550.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	32	2	1.9459	2.2034700000000003	2.46104	0.0429089	0.032841	0.148082	0.145164
chr12	1691513	1691613	5064172	0	+	0.55	(0.515,0.57]	chr12	477859	3	SS5_PROX	SS5_PROX:INTRON	ADIPOR2	ENSG00000006831.10	ENST00000537545.1:ENST00000357103.5:ENST00000540974.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	32	2	1.9459	2.2034700000000003	2.46104	0.0429089	0.032841	0.148082	0.145164
chr19	10329872	10329959	7135473	0	-	0.551724	(0.515,0.57]	chr19	719366	4	INTRON	INTRON	RAVER1	ENSG00000161847.14	ENST00000617231.5:ENST00000592208.5:ENST00000611074.4:ENST00000615032.4:ENST00000591969.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	32	2	1.9459	2.2034700000000003	2.46104	0.0429089	0.032841	0.148082	0.145164
chr10	73064656	73064756	4647519	0	-	0.47	(0.44,0.476]	chr10	427530	107	INTRON	INTRON	P4HA1	ENSG00000122884.13	ENST00000394890.7:ENST00000307116.6:ENST00000373008.6:ENST00000440381.5:ENST00000263556.3	protein_coding	protein_coding	protein_coding	protein_coding	14	152	2	1.99994	2.20337	2.4068	0.00159453	0.00117196	0.0367961	0.0312564
chr7	111215608	111215708	3620638	0	-	0.34	(0.32,0.35]	chr7	337093	2517	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	80	2	1.68188	2.2033050000000003	2.72473	0.031521	0.00433316	0.144381	0.0579683
chr16	1611467	1611567	6429397	0	-	0.49	(0.476,0.515]	chr16	618200	1	SS5_PROX	SS5_PROX:INTRON	IFT140	ENSG00000187535.14	ENST00000426508.7	protein_coding	protein_coding	protein_coding	protein_coding	7	87	2	1.96833	2.20327	2.43821	0.0195007	0.00177508	0.119967	0.0378678
chr1	35641141	35641241	422316	0	-	0.49	(0.476,0.515]	chr1	50874	4	SS5_PROX	SS5_PROX:INTRON	PSMB2	ENSG00000126067.12	ENST00000373237.4	protein_coding	protein_coding	protein_coding	protein_coding	13	136	2	1.8109	2.203255	2.59561	0.00417555	8.4503e-4	0.0591344	0.0267232
chr21	43758838	43758937	7413573	0	+	0.323232	(0.32,0.35]	chr21	755598	29	UTR3	UTR3:EXON_MRNA	PDXK	ENSG00000160209.19	ENST00000468090.5:ENST00000291565.9:ENST00000467908.1	protein_coding	protein_coding	protein_coding	protein_coding	7	88	2	1.65179	2.2032100000000003	2.75463	0.0245569	0.00387748	0.131869	0.0543578
chr21	10331325	10331425	7427333	0	-	0.46	(0.44,0.476]	chr21	757671	19	INTRON	INTRON	ENSG00000277693	ENSG00000277693.2	ENST00000622592.1:ENST00000616952.1	lncRNA	lncRNA	lncRNA	lncRNA	6	74	2	1.92837	2.203205	2.47804	0.0222222	0.00325838	0.124303	0.0508595
chr16	18130764	18130864	6453941	0	-	0.27	[0,0.28]	chr16	621960	1270	INTRON	INTRON	ENSG00000259929:ENSG00000260242	ENSG00000259929.5:ENSG00000260242.1	ENST00000567304.1:ENST00000563866.1	lncRNA	lncRNA	lncRNA	lncRNA	4	74	2	2.00649	2.2032	2.39991	0.040391	0.0163416	0.161534	0.101571
chr15	64380657	64380757	6205083	0	-	0.42	(0.408,0.44]	chr15	591802	3	SS5_PROX	SS5_PROX:INTRON	ENSG00000259316:PCLAF	ENSG00000259316.12:ENSG00000166803.14	ENST00000634318.1:ENST00000635704.1:ENST00000634529.1:ENST00000635511.1:ENST00000635605.1:ENST00000635593.1:ENST00000635320.1:ENST00000300035.9:ENST00000380258.6:ENST00000559519.5:ENST00000558008.3:ENST00000558043.5:ENST00000560234.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	54	2	1.66104	2.20311	2.74518	0.0349715	0.0152229	0.13747500000000001	0.108535
chr1	43975799	43975848	88660	0	+	0.469388	(0.44,0.476]	chr1	11924	1	CDS	CDS:UTR3:EXON_MRNA:SS3_PROX:INTRON	ATP6V0B	ENSG00000117410.14	ENST00000472505.6:ENST00000532642.5:ENST00000236067.8:ENST00000471859.6:ENST00000472277.5:ENST00000472174.7:ENST00000461670.5:ENST00000468183.5:ENST00000473485.5:ENST00000496131.1:ENST00000498208.1:ENST00000532072.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	67	2	1.4317	2.203105	2.97451	0.0304668	0.00853825	0.143385	0.0780043
chr10	5901429	5901528	4385293	0	+	0.40404	(0.378,0.408]	chr10	404631	59	INTRON	INTRON	FBH1	ENSG00000134452.20	ENST00000397269.7:ENST00000362091.9:ENST00000470089.5:ENST00000462507.1:ENST00000379999.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	39	2	1.94681	2.203065	2.45932	0.0457723	0.0346754	0.149888	0.148144
chr14	61744290	61744390	5906101	0	-	0.39	(0.378,0.408]	chr14	561059	269	INTRON	INTRON	HIF1A-AS3	ENSG00000258667.2	ENST00000660325.1:ENST00000554254.1	lncRNA	lncRNA	lncRNA	lncRNA	3	39	2	1.94681	2.203065	2.45932	0.0457723	0.0346754	0.149888	0.148144
chr20	47219658	47219757	7348121	0	-	0.393939	(0.378,0.408]	chr20	749229	66	INTRON	INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000467200.6:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4	protein_coding	protein_coding	protein_coding	protein_coding	11	131	2	2.0331	2.20301	2.37292	0.00456292	0.00105162	0.0595107	0.0299022
chr16	24541689	24541788	6327676	0	+	0.363636	(0.35,0.378]	chr16	605824	5	INTRON	INTRON	RBBP6	ENSG00000122257.20	ENST00000564314.5:ENST00000567686.5:ENST00000568015.5:ENST00000319715.10:ENST00000452655.6:ENST00000381039.7:ENST00000646282.1:ENST00000348022.6	protein_coding	protein_coding	protein_coding	protein_coding	9	108	2	1.57496	2.20299	2.83102	0.0271411	5.35542e-4	0.123904	0.0209215
chr16	81517788	81517888	6405729	0	+	0.57	(0.515,0.57]	chr16	615031	219	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6	protein_coding	protein_coding	protein_coding	protein_coding	9	76	2	1.27738	2.202915	3.12845	0.0499863	4.79786e-4	0.17488	0.0203136
chr1	1769727	1769826	361649	0	-	0.333333	(0.32,0.35]	chr1	42219	39	INTRON	INTRON	NADK	ENSG00000008130.15	ENST00000378625.5:ENST00000341991.7:ENST00000341426.9:ENST00000492845.6:ENST00000492768.5:ENST00000460602.5:ENST00000464373.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	51	2	1.83315	2.20289	2.57263	0.0313348	0.0312297	0.144381	0.13151
chr7	73497001	73497100	3554844	0	-	0.383838	(0.378,0.408]	chr7	330795	37	INTRON	INTRON	BAZ1B	ENSG00000009954.11	ENST00000339594.9:ENST00000404251.1	protein_coding	protein_coding	protein_coding	protein_coding	8	94	2	2.1653	2.20289	2.24048	0.00867536	0.00289537	0.0787771	0.0494641
chr1	11804532	11804632	378935	0	-	0.41	(0.408,0.44]	chr1	44490	1	SS3_ADJ	SS3_ADJ:SS3_PROX:SS5_PROX:INTRON	MTHFR	ENSG00000177000.13	ENST00000376590.9:ENST00000376592.6:ENST00000376585.6:ENST00000641747.1:ENST00000641446.1:ENST00000376486.3:ENST00000641437.1:ENST00000418034.1:ENST00000431243.6:ENST00000642002.1:ENST00000413656.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	101	2	1.8321	2.202875	2.57365	0.00996071	0.00172241	0.0842166	0.0383099
chr4	165342508	165342601	2079787	0	+	0.473118	(0.44,0.476]	chr4	205593	7	UTR3	UTR3:EXON_MRNA	MSMO1	ENSG00000052802.13	ENST00000261507.11:ENST00000393766.6	protein_coding	protein_coding	protein_coding	protein_coding	37	404	2	1.75994	2.20284	2.64574	0.00110121	2.14326e-5	0.03038	0.00377331
chr3	15856178	15856277	1624409	0	-	0.414141	(0.408,0.44]	chr3	168034	415	INTRON	INTRON	ANKRD28	ENSG00000206560.12	ENST00000399451.6:ENST00000412318.5:ENST00000439830.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	95	2	1.92319	2.2027799999999997	2.48237	0.0247322	5.72623e-4	0.12011	0.0217398
chr13	83049717	83049817	5633744	0	-	0.27	[0,0.28]	chr13	536804	2708	INTRON	INTRON	ENSG00000286385	ENSG00000286385.1	ENST00000663739.1	lncRNA	lncRNA	lncRNA	lncRNA	3	54	2	1.89998	2.20274	2.5055	0.0599553	0.0359431	0.169548	0.152322
chr20	49701580	49701680	7353505	0	-	0.36	(0.35,0.378]	chr20	749846	445	INTRON	INTRON	B4GALT5	ENSG00000158470.5	ENST00000371711.4	protein_coding	protein_coding	protein_coding	protein_coding	3	40	2	1.75561	2.202705	2.6498	0.0739399	0.0210137	0.190914	0.122348
chr1	182843934	182844033	273023	0	+	0.555556	(0.515,0.57]	chr1	31871	1	INTRON	INTRON	DHX9	ENSG00000135829.17	ENST00000367549.4:ENST00000483416.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	116	2	2.09682	2.2026950000000003	2.30857	0.0026155	7.37051e-4	0.0455413	0.0247924
chr7	107449726	107449825	3611882	0	-	0.414141	(0.408,0.44]	chr7	336694	367	INTRON	INTRON	COG5	ENSG00000164597.15	ENST00000297135.9:ENST00000347053.8:ENST00000393603.7:ENST00000484237.5:ENST00000475638.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	68	2	1.58026	2.202685	2.82511	0.0444624	0.00189528	0.149888	0.0402736
chr17	57999127	57999226	6799968	0	-	0.333333	(0.32,0.35]	chr17	671423	44	INTRON	INTRON	ENSG00000266086	ENSG00000266086.3	ENST00000578794.2:ENST00000665125.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	10	134	2	2.05211	2.202635	2.35316	0.0106769	8.28744e-4	0.0861859	0.0263691
chr1	8763628	8763728	373244	0	-	0.54	(0.515,0.57]	chr1	43549	99	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000656437.1:ENST00000659924.1	protein_coding	protein_coding	protein_coding	protein_coding	8	77	2	1.64356	2.2025249999999996	2.7614899999999998	0.024299	6.09302e-4	0.12011	0.0223951
chr17	75207168	75207265	6674270	0	+	0.536082	(0.515,0.57]	chr17	651337	10	INTRON	INTRON	NUP85	ENSG00000125450.11	ENST00000583569.5:ENST00000245544.9:ENST00000583948.5:ENST00000579324.5:ENST00000582833.5:ENST00000449421.6:ENST00000581104.5:ENST00000579298.5:ENST00000583548.1:ENST00000577208.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	77	2	1.64356	2.2025249999999996	2.7614899999999998	0.024299	6.09302e-4	0.12011	0.0223951
chr5	134381208	134381308	2488675	0	+	0.46	(0.44,0.476]	chr5	237596	4	SS5_PROX	SS5_PROX:INTRON	UBE2B	ENSG00000119048.9	ENST00000507277.2:ENST00000510021.5:ENST00000511807.1:ENST00000265339.7:ENST00000506787.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	61	2	1.9039	2.202475	2.50105	0.0501498	0.00240161	0.156383	0.0452061
chr1	10090072	10090172	19699	0	+	0.43	(0.408,0.44]	chr1	1847	171	INTRON	INTRON	UBE4B	ENSG00000130939.20	ENST00000672724.1:ENST00000253251.12:ENST00000343090.11	protein_coding	protein_coding	protein_coding	protein_coding	6	58	2	1.31757	2.2024749999999997	3.08738	0.0705974	0.00478231	0.184528	0.0636201
chr12	111589756	111589855	5413137	0	-	0.535354	(0.515,0.57]	chr12	516941	250	INTRON	INTRON	ATXN2	ENSG00000204842.18	ENST00000642389.2:ENST00000608853.5:ENST00000672613.1:ENST00000673436.1:ENST00000643669.2:ENST00000616825.4:ENST00000389153.10:ENST00000550104.5:ENST00000483311.6:ENST00000672335.1:ENST00000673557.1:ENST00000673283.1:ENST00000673449.1:ENST00000535949.5:ENST00000542287.6:ENST00000644883.1:ENST00000647305.1:ENST00000671792.1:ENST00000392645.6:ENST00000672105.1:ENST00000549455.1:ENST00000548492.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	13	125	2	1.9086	2.202325	2.49605	0.00449259	2.49138e-4	0.0593914	0.0140075
chr8	60253142	60253242	3956618	0	-	0.5	(0.476,0.515]	chr8	362980	204	INTRON	INTRON	CA8	ENSG00000178538.10	ENST00000317995.5:ENST00000524872.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	50	2	1.99341	2.2023099999999998	2.41121	0.037389	0.0110342	0.155878	0.0873897
chr1	234466802	234466901	661310	0	-	0.444444	(0.44,0.476]	chr1	78244	7	INTRON	INTRON	TARBP1	ENSG00000059588.10	ENST00000040877.2	protein_coding	protein_coding	protein_coding	protein_coding	5	50	2	1.60176	2.202255	2.80275	0.0389597	0.0146513	0.160861	0.0982604
chrX	44906385	44906485	7648934	0	+	0.45	(0.44,0.476]	chrX	782726	320	INTRON	INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000675440.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000621147.5:ENST00000475233.1:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	50	2	1.60176	2.202255	2.80275	0.0389597	0.0146513	0.160861	0.0982604
chr15	57997527	57997626	6186851	0	-	0.393939	(0.378,0.408]	chr15	589758	20	INTRON	INTRON	ALDH1A2	ENSG00000128918.15	ENST00000537372.5:ENST00000249750.9:ENST00000347587.7:ENST00000430119.6:ENST00000558231.5:ENST00000559517.5:ENST00000559266.5:ENST00000561070.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	70	2	1.84831	2.20219	2.55607	0.0172621	0.00704647	0.111749	0.0718189
chr8	127992324	127992422	3862048	0	+	0.387755	(0.378,0.408]	chr8	355493	21	INTRON	INTRON	PVT1	ENSG00000249859.13	ENST00000667305.1:ENST00000690350.1:ENST00000653522.1:ENST00000661830.1:ENST00000657289.1:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000656880.1:ENST00000660200.1:ENST00000657211.1:ENST00000653845.1:ENST00000517525.2:ENST00000651587.1:ENST00000692980.1:ENST00000666353.1:ENST00000654324.1:ENST00000657693.1:ENST00000666080.1:ENST00000667539.1:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000664293.1:ENST00000662410.1:ENST00000670795.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000654091.1:ENST00000657356.1:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000662061.1:ENST00000656491.1:ENST00000667714.1:ENST00000654105.1:ENST00000665721.1:ENST00000660438.1:ENST00000659326.1:ENST00000666842.1:ENST00000517790.2:ENST00000654369.1:ENST00000664995.1:ENST00000656532.1:ENST00000661988.1:ENST00000670714.1:ENST00000669951.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000668123.1:ENST00000666776.1:ENST00000664299.1:ENST00000659912.1:ENST00000670532.1:ENST00000660896.1:ENST00000523068.2:ENST00000519481.6:ENST00000669082.1:ENST00000671088.1:ENST00000670204.1:ENST00000652695.1:ENST00000517838.6:ENST00000663461.1:ENST00000513868.6:ENST00000670626.1:ENST00000692433.1:ENST00000523190.7:ENST00000685606.1:ENST00000690788.1:ENST00000685634.1:ENST00000689722.1:ENST00000653990.1:ENST00000655783.1:ENST00000656411.1:ENST00000664742.1:ENST00000655099.1:ENST00000662709.1:ENST00000512617.7:ENST00000660122.1:ENST00000666452.1:ENST00000659666.1:ENST00000666076.1:ENST00000659892.1:ENST00000521600.5:ENST00000522875.5	lncRNA	lncRNA	lncRNA	lncRNA	6	70	2	1.84831	2.20219	2.55607	0.0172621	0.00704647	0.111749	0.0718189
chr19	45108918	45109017	7079196	0	+	0.50505	(0.476,0.515]	chr19	708078	1	INTRON	INTRON	PPP1R37	ENSG00000104866.11	ENST00000544069.2:ENST00000221462.9:ENST00000544897.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	60	2	1.74317	2.202145	2.66112	0.0396373	0.0044598	0.161534	0.0592169
chr3	47586444	47586542	1683085	0	-	0.5	(0.476,0.515]	chr3	171953	13	UTR3	UTR3:EXON_MRNA	SMARCC1	ENSG00000173473.11	ENST00000254480.10	protein_coding	protein_coding	protein_coding	protein_coding	5	60	2	1.74317	2.202145	2.66112	0.0396373	0.0044598	0.161534	0.0592169
chr11	1303958	1304056	4890841	0	-	0.459184	(0.44,0.476]	chr11	458116	13	INTRON	INTRON	TOLLIP	ENSG00000078902.16	ENST00000317204.11:ENST00000525159.5:ENST00000263646.11:ENST00000530506.5:ENST00000527938.5:ENST00000530541.1:ENST00000527746.5:ENST00000527638.1:ENST00000532551.1:ENST00000530821.1:ENST00000527085.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	51	2	1.7965	2.20212	2.60774	0.0255874	0.0205549	0.122348	0.120269
chr10	128120311	128120410	4715642	0	-	0.484848	(0.476,0.515]	chr10	435172	6	INTRON	INTRON	MKI67	ENSG00000148773.14	ENST00000368654.8:ENST00000368653.7:ENST00000478293.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	50	2	1.63962	2.2021100000000002	2.7646	0.0346854	0.0162075	0.148144	0.101453
chr16	70123395	70123494	6383524	0	+	0.484848	(0.476,0.515]	chr16	613459	23	INTRON	INTRON	PDPR	ENSG00000090857.14	ENST00000288050.9:ENST00000561920.5:ENST00000568530.5:ENST00000398122.7:ENST00000565186.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	50	2	1.63962	2.2021100000000002	2.7646	0.0346854	0.0162075	0.148144	0.101453
chr1	16639066	16639166	383771	0	-	0.49	(0.476,0.515]	chr1	45226	35	INTRON	INTRON	CROCCP2	ENSG00000215908.10	ENST00000639456.1:ENST00000412962.4:ENST00000635081.1:ENST00000362058.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	9	99	2	1.62997	2.202085	2.7742	0.018725	8.54322e-4	0.117523	0.0267428
chr1	112946284	112946384	524045	0	-	0.49	(0.476,0.515]	chr1	61694	104	INTRON	INTRON	SLC16A1	ENSG00000155380.13	ENST00000679803.1:ENST00000369626.8:ENST00000538576.5:ENST00000429288.2:ENST00000458229.6:ENST00000679846.1:ENST00000478835.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	54	2	1.75142	2.20205	2.65268	0.0259024	0.0201975	0.121522	0.121243
chr7	74176207	74176305	3332242	0	+	0.326531	(0.32,0.35]	chr7	310021	14	INTRON	INTRON	EIF4H	ENSG00000106682.16	ENST00000678438.1:ENST00000489484.5:ENST00000677998.1:ENST00000495187.2:ENST00000265753.13:ENST00000353999.6:ENST00000677570.1:ENST00000677681.1:ENST00000678815.1:ENST00000679266.1:ENST00000679287.1:ENST00000479338.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	45	2	2.09005	2.20205	2.31405	0.0517107	0.0330483	0.176696	0.133816
chr8	123375070	123375169	4042426	0	-	0.333333	(0.32,0.35]	chr8	368782	20	INTRON	INTRON	ATAD2	ENSG00000156802.13	ENST00000287394.10:ENST00000517666.5:ENST00000521903.5:ENST00000519124.5:ENST00000521496.5:ENST00000530065.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	83	2	1.99785	2.20201	2.40617	0.0215554	0.0040507	0.114686	0.0578376
chr15	101969832	101969932	6117553	0	+	0.58	(0.57,1]	chr15	582296	32	INTRON	INTRON	WASH3P	ENSG00000185596.16	ENST00000558686.5:ENST00000354296.9:ENST00000559163.6:ENST00000557932.5:ENST00000558784.5:ENST00000560956.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	7	42	2	2.0955	2.2018750000000002	2.30825	0.00622614	0.00499769	0.0718276	0.0617433
chr1	2191707	2191803	362923	0	-	0.520833	(0.515,0.57]	chr1	42338	21	EXON_MRNA	EXON_MRNA:INTRON	FAAP20	ENSG00000162585.17	ENST00000400919.7:ENST00000469733.5:ENST00000414253.5:ENST00000428120.5:ENST00000400918.7:ENST00000497675.2:ENST00000487186.5:ENST00000401813.7:ENST00000378546.9:ENST00000378543.2:ENST00000476803.1:ENST00000440825.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	51	2	1.81744	2.20184	2.58624	0.031028	0.00526399	0.143457	0.0633874
chr17	22185725	22185825	6579523	0	+	0.39	(0.378,0.408]	chr17	639568	21	INTRON	INTRON	UBBP4	ENSG00000263563.7	ENST00000648259.1:ENST00000688301.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	4	47	2	2.09402	2.201815	2.30961	0.055088	0.0126438	0.165463	0.0982897
chr3	98589756	98589856	1755124	0	-	0.39	(0.378,0.408]	chr3	178005	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	CPOX	ENSG00000080819.9	ENST00000647941.2:ENST00000513674.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	47	2	2.09402	2.201815	2.30961	0.055088	0.0126438	0.165463	0.0982897
chr4	56439192	56439290	1962647	0	+	0.377551	(0.35,0.378]	chr4	196866	25	INTRON	INTRON	PAICS	ENSG00000128050.9	ENST00000514888.5:ENST00000264221.6:ENST00000505164.5:ENST00000504188.1:ENST00000399688.7:ENST00000510584.1:ENST00000512576.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	52	2	1.91706	2.201815	2.48657	0.032907	0.026412	0.145164	0.122506
chr16	21866506	21866606	6461908	0	-	0.48	(0.476,0.515]	chr16	623467	3	INTRON	INTRON	NPIPB4	ENSG00000185864.18	ENST00000543449.1:ENST00000538859.1	protein_coding	processed_transcript	protein_coding	processed_transcript	19	216	2	2.19968	2.201785	2.20389	7.08867e-4	5.04013e-4	0.0242289	0.0207931
chr1	6530070	6530169	367870	0	-	0.323232	(0.32,0.35]	chr1	43195	5	INTRON	INTRON	NOL9	ENSG00000162408.11	ENST00000377705.6	protein_coding	protein_coding	protein_coding	protein_coding	4	59	2	2.01768	2.2017499999999997	2.38582	0.0361337	0.0138529	0.152563	0.0953077
chr11	47505766	47505864	4949923	0	-	0.479592	(0.476,0.515]	chr11	464224	45	INTRON	INTRON	CELF1	ENSG00000149187.19	ENST00000310513.10:ENST00000687097.1:ENST00000531165.5:ENST00000532048.5:ENST00000530151.5:ENST00000525841.5:ENST00000528434.5:ENST00000543178.5:ENST00000526419.1:ENST00000528538.5:ENST00000526277.1	protein_coding	protein_coding	protein_coding	protein_coding	3	36	2	1.91817	2.20172	2.48527	0.0459211	0.03496	0.164984	0.13747500000000001
chr16	2942801	2942898	6280749	0	+	0.484536	(0.476,0.515]	chr16	600991	24	INTRON	INTRON	FLYWCH1	ENSG00000059122.17	ENST00000253928.14:ENST00000416288.6:ENST00000344592.9:ENST00000570752.5:ENST00000574985.1:ENST00000571983.5:ENST00000575679.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	36	2	1.91817	2.20172	2.48527	0.0459211	0.03496	0.164984	0.13747500000000001
chr3	49769993	49770093	1694718	0	-	0.48	(0.476,0.515]	chr3	173818	212	INTRON	INTRON	IP6K1	ENSG00000176095.12	ENST00000321599.9:ENST00000395238.5:ENST00000613416.4:ENST00000468463.5:ENST00000460540.1:ENST00000498149.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	36	2	1.91817	2.20172	2.48527	0.0459211	0.03496	0.164984	0.13747500000000001
chr17	66520056	66520156	6664473	0	+	0.33	(0.32,0.35]	chr17	650332	234	INTRON	INTRON	PRKCA	ENSG00000154229.12	ENST00000413366.8:ENST00000578063.5:ENST00000284384.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	79	2	1.80487	2.20171	2.59855	0.0210603	0.00682041	0.122559	0.0712518
chr11	46365843	46365943	4784287	0	+	0.57	(0.515,0.57]	chr11	442424	2	SS3_PROX	SS3_PROX:INTRON	DGKZ	ENSG00000149091.15	ENST00000343674.10:ENST00000525242.5:ENST00000532868.6:ENST00000528615.5:ENST00000531879.5:ENST00000527674.5:ENST00000524984.5:ENST00000456247.7:ENST00000527911.5:ENST00000533376.5:ENST00000318201.12:ENST00000421244.6:ENST00000525434.5:ENST00000454345.6:ENST00000534215.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	43	2	1.56838	2.201695	2.83501	0.0424458	0.0117686	0.161763	0.0894475
chr3	43706855	43706954	1410339	0	+	0.373737	(0.35,0.378]	chr3	147937	39	INTRON	INTRON	ABHD5	ENSG00000011198.10	ENST00000643520.1:ENST00000458276.7:ENST00000649763.1:ENST00000643140.1:ENST00000643500.1:ENST00000644371.2:ENST00000013894.3:ENST00000646378.1:ENST00000643477.1:ENST00000646799.1:ENST00000454293.2:ENST00000642351.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	83	2	2.03655	2.20166	2.36677	0.0139343	0.00535994	0.0957526	0.0663076
chr1	45607155	45607220	93441	0	+	0.461538	(0.44,0.476]	chr1	12607	2	SS3_PROX	SS3_PROX:INTRON	NASP	ENSG00000132780.17	ENST00000437901.6:ENST00000537798.5:ENST00000437362.6:ENST00000350030.8:ENST00000527359.5:ENST00000453748.5:ENST00000525515.5:ENST00000527470.5:ENST00000529333.5:ENST00000528238.5:ENST00000534101.1:ENST00000470768.5:ENST00000372052.8:ENST00000351223.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	103	2	1.81921	2.20159	2.58397	0.0142184	6.72874e-4	0.0960818	0.023543
chr17	57273471	57273570	6632917	0	+	0.444444	(0.44,0.476]	chr17	648001	51	INTRON	INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000581776.5:ENST00000581523.5:ENST00000674961.1:ENST00000582453.5:ENST00000675656.1:ENST00000322684.7:ENST00000579590.5:ENST00000579531.5:ENST00000676073.1:ENST00000675822.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	60	2	2.07016	2.20144	2.33272	0.0151815	0.0129984	0.0994339	0.0991656
chr7	148862503	148862603	3670545	0	-	0.32	(0.28,0.32]	chr7	340628	148	INTRON	INTRON	EZH2	ENSG00000106462.12	ENST00000683292.1:ENST00000320356.7:ENST00000492143.5:ENST00000478654.5:ENST00000350995.6:ENST00000460911.5:ENST00000683744.1:ENST00000682317.1:ENST00000682263.1:ENST00000684300.1:ENST00000476773.5:ENST00000483967.5:ENST00000498186.5:ENST00000483012.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	91	2	1.35798	2.201415	3.04485	0.0366052	0.00894006	0.154143	0.0799922
chr6	167012161	167012255	3033497	0	+	0.319149	(0.28,0.32]	chr6	282650	6	INTRON	INTRON	CEP43	ENSG00000213066.13	ENST00000622353.4:ENST00000366847.9:ENST00000349556.4	protein_coding	protein_coding	protein_coding	protein_coding	11	161	2	1.92181	2.201245	2.48068	0.00936009	8.18184e-4	0.0817766	0.0261438
chr16	67777177	67777277	6505389	0	-	0.48	(0.476,0.515]	chr16	629654	47	INTRON	INTRON	RANBP10	ENSG00000141084.12	ENST00000317506.8:ENST00000448631.6:ENST00000602506.5:ENST00000602677.5:ENST00000602525.5:ENST00000602638.5:ENST00000602815.5:ENST00000602887.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	92	2	2.06011	2.20124	2.34237	0.00869033	0.00223831	0.0788605	0.0435144
chr10	78039048	78039144	4475933	0	+	0.53125	(0.515,0.57]	chr10	411990	12	EXON_MRNA	EXON_MRNA:INTRON	RPS24	ENSG00000138326.21	ENST00000613865.5:ENST00000435275.5:ENST00000645440.1:ENST00000440692.6:ENST00000360830.9:ENST00000372360.9:ENST00000464716.6:ENST00000645698.1:ENST00000476545.6:ENST00000465692.2:ENST00000482069.5:ENST00000645195.1:ENST00000480662.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	69	2	2.07721	2.20121	2.3252100000000002	0.0067022	0.00525266	0.0738715	0.0633615
chr4	39768661	39768760	1953700	0	+	0.383838	(0.378,0.408]	chr4	195650	75	INTRON	INTRON	UBE2K	ENSG00000078140.14	ENST00000510934.5:ENST00000261427.10:ENST00000438068.6:ENST00000513231.5:ENST00000503368.5:ENST00000445950.2:ENST00000510719.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	71	2	2.18994	2.20116	2.21238	0.0218124	0.00448961	0.11491	0.0612035
chr12	56639643	56639725	5335744	0	-	0.585366	(0.57,1]	chr12	510115	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ATP5F1B	ENSG00000110955.9	ENST00000262030.8:ENST00000548474.2:ENST00000547808.5:ENST00000547250.5:ENST00000551020.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	56	2	1.92756	2.201115	2.47467	0.0220439	2.17796e-4	0.115395	0.0129418
chr1	108951330	108951429	519055	0	-	0.414141	(0.408,0.44]	chr1	60921	10	UTR5	UTR5:EXON_MRNA:INTRON	CLCC1	ENSG00000121940.17	ENST00000690509.1:ENST00000687328.1:ENST00000685014.1:ENST00000685540.1:ENST00000686576.1:ENST00000688070.1:ENST00000691513.1:ENST00000686821.1:ENST00000692511.1:ENST00000689479.1:ENST00000687646.1:ENST00000687998.1:ENST00000687226.1:ENST00000693336.1:ENST00000689991.1:ENST00000687591.1:ENST00000691777.1:ENST00000690756.1:ENST00000688778.1:ENST00000685104.1:ENST00000689103.1:ENST00000687734.1:ENST00000686434.1:ENST00000685497.1:ENST00000691342.1:ENST00000686776.1:ENST00000692342.1:ENST00000689351.1:ENST00000692584.1:ENST00000692775.1:ENST00000687134.1:ENST00000675018.1:ENST00000690781.1:ENST00000691556.1:ENST00000689189.1:ENST00000687099.1:ENST00000685791.1:ENST00000687865.1:ENST00000687449.1:ENST00000688285.1:ENST00000686817.1:ENST00000369968.7:ENST00000674992.1:ENST00000675001.1:ENST00000369969.7:ENST00000356970.6:ENST00000688610.1:ENST00000675128.1:ENST00000693089.1:ENST00000675571.1:ENST00000675650.1:ENST00000369970.8:ENST00000674561.2:ENST00000675451.1:ENST00000675654.1:ENST00000675790.1:ENST00000675584.1:ENST00000692795.1:ENST00000691731.1:ENST00000689359.1:ENST00000676392.2:ENST00000676391.2:ENST00000676454.1:ENST00000674849.1:ENST00000675956.1:ENST00000302500.5:ENST00000675508.1:ENST00000688168.1:ENST00000693673.1:ENST00000692404.1:ENST00000686078.1:ENST00000690874.1:ENST00000692732.1:ENST00000685628.1:ENST00000676306.1:ENST00000676059.2:ENST00000674527.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	13	148	2	1.85874	2.2011149999999997	2.54349	0.00680022	2.29121e-4	0.071184	0.0133403
chr11	14296952	14297051	4917048	0	-	0.464646	(0.44,0.476]	chr11	460793	7	INTRON	INTRON	RRAS2	ENSG00000133818.14	ENST00000256196.9:ENST00000537760.5:ENST00000529237.5:ENST00000534746.5:ENST00000526063.5:ENST00000532814.5:ENST00000531807.5:ENST00000532950.5:ENST00000531421.5:ENST00000526717.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	49	2	1.9039	2.201065	2.49823	0.0501498	0.00718224	0.156383	0.0756118
chr5	151779622	151779722	2521871	0	+	0.38	(0.378,0.408]	chr5	241290	15	INTRON	INTRON	G3BP1	ENSG00000145907.16	ENST00000523519.5:ENST00000520578.6:ENST00000627077.2:ENST00000678976.1:ENST00000677408.1:ENST00000678070.1:ENST00000678964.1:ENST00000678925.1:ENST00000394123.7:ENST00000676978.1:ENST00000679289.1:ENST00000677493.1:ENST00000676644.1:ENST00000677757.1:ENST00000522761.6:ENST00000677909.1:ENST00000676827.1:ENST00000520177.6:ENST00000676634.1:ENST00000678854.1:ENST00000677602.1:ENST00000519832.1:ENST00000518726.5:ENST00000676911.1:ENST00000356245.8:ENST00000678646.1:ENST00000677381.1:ENST00000678904.1:ENST00000678910.1:ENST00000678101.1:ENST00000677105.1:ENST00000676813.1:ENST00000522367.6:ENST00000517947.5:ENST00000507878.7:ENST00000520006.2:ENST00000678369.1:ENST00000677433.1:ENST00000678564.1:ENST00000677252.1:ENST00000677369.1:ENST00000677284.1:ENST00000676894.1:ENST00000677923.1:ENST00000677323.1:ENST00000522666.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	104	2	2.19499	2.201055	2.20712	0.00978751	0.00158524	0.0835427	0.0367961
chr15	63652013	63652113	6199019	0	-	0.32	(0.28,0.32]	chr15	591149	2	SS5_PROX	SS5_PROX:INTRON	HERC1	ENSG00000103657.14	ENST00000443617.7	protein_coding	protein_coding	protein_coding	protein_coding	3	47	2	1.86684	2.20103	2.53522	0.0605813	0.0310424	0.171122	0.143457
chr1	43773233	43773332	86744	0	+	0.40404	(0.378,0.408]	chr1	11658	6	INTRON	INTRON	ST3GAL3	ENSG00000126091.21	ENST00000646096.1:ENST00000532911.6:ENST00000643597.1:ENST00000643886.1:ENST00000372372.7:ENST00000545417.5:ENST00000330208.6:ENST00000335430.10:ENST00000361400.9:ENST00000347631.8:ENST00000642331.1:ENST00000647237.1:ENST00000643252.1:ENST00000372374.7:ENST00000361392.9:ENST00000646109.1:ENST00000533997.6:ENST00000353126.8:ENST00000645640.1:ENST00000642934.1:ENST00000643283.1:ENST00000351035.8:ENST00000642949.1:ENST00000489897.6:ENST00000646971.1:ENST00000645142.1:ENST00000645705.1:ENST00000530154.5:ENST00000646027.1:ENST00000646069.1:ENST00000642504.1:ENST00000647148.1:ENST00000262915.8:ENST00000479383.6:ENST00000647482.1:ENST00000645394.1:ENST00000647128.1:ENST00000461066.6:ENST00000361746.9:ENST00000645034.1:ENST00000645165.1:ENST00000647134.1:ENST00000644195.1:ENST00000642194.1:ENST00000372368.7:ENST00000646686.1:ENST00000372366.6:ENST00000361812.9:ENST00000469715.6:ENST00000372369.5:ENST00000372367.5:ENST00000372365.5:ENST00000528371.5:ENST00000533212.5:ENST00000530581.5:ENST00000531816.1:ENST00000531993.6:ENST00000490541.6:ENST00000372362.6:ENST00000531451.5:ENST00000646416.1:ENST00000645117.1:ENST00000533933.6:ENST00000332628.11:ENST00000643813.1:ENST00000644922.1:ENST00000644287.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	51	2	1.88729	2.200965	2.51464	0.0532327	0.00684341	0.162538	0.0748032
chr7	152037713	152037813	3449631	0	+	0.39	(0.378,0.408]	chr7	322435	96	INTRON	INTRON	GALNT11	ENSG00000178234.13	ENST00000430044.7:ENST00000482812.1:ENST00000431668.1:ENST00000446096.5:ENST00000447778.5:ENST00000423337.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	10	110	2	1.78596	2.20093	2.6159	0.00765583	0.00194844	0.0779344	0.0400465
chr13	28209937	28210037	5461547	0	+	0.47	(0.44,0.476]	chr13	523261	122	INTRON	INTRON	PAN3	ENSG00000152520.14	ENST00000503791.5:ENST00000380958.8:ENST00000399613.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	59	2	1.92837	2.20088	2.47339	0.0222222	0.0090196	0.124303	0.080367
chr3	15441427	15441526	1373502	0	+	0.363636	(0.35,0.378]	chr3	144857	24	UTR3	UTR3:EXON_MRNA:INTRON	EAF1	ENSG00000144597.14	ENST00000396842.7:ENST00000617675.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	18	222	2	2.05375	2.200855	2.34796	0.00105691	6.1949e-4	0.0299563	0.0229151
chr7	133682024	133682124	3422471	0	+	0.48	(0.476,0.515]	chr7	319395	515	INTRON	INTRON	EXOC4	ENSG00000131558.15	ENST00000253861.5:ENST00000479839.6:ENST00000483800.5:ENST00000469115.5:ENST00000489931.5:ENST00000482089.5:ENST00000460346.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	59	2	1.86014	2.200855	2.54157	0.0277606	0.00697457	0.137011	0.0718189
chr5	43478706	43478804	2614787	0	-	0.255102	[0,0.28]	chr5	248558	21	INTRON	INTRON	TMEM267	ENSG00000151881.15	ENST00000397080.8:ENST00000500337.6:ENST00000512085.5:ENST00000511525.1:ENST00000510130.1:ENST00000506860.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	77	2	2.01411	2.2008400000000004	2.38757	0.0552962	0.0117032	0.165463	0.0962115
chr20	57497460	57497559	7358982	0	-	0.40404	(0.378,0.408]	chr20	750411	4	UTR3	UTR3:EXON_MRNA:INTRON	CTCFL	ENSG00000124092.13	ENST00000423479.7:ENST00000429804.7:ENST00000609232.5:ENST00000608263.5:ENST00000243914.8:ENST00000371196.6	protein_coding	protein_coding	protein_coding	protein_coding	10	117	2	2.04984	2.200825	2.35181	0.00321033	0.00287186	0.0522684	0.0474836
chr5	32149973	32150073	2597272	0	-	0.26	[0,0.28]	chr5	246744	57	INTRON	INTRON	GOLPH3	ENSG00000113384.14	ENST00000265070.7:ENST00000503610.5:ENST00000512668.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	82	2	1.62448	2.2008199999999998	2.77716	0.0302032	0.022039	0.142761	0.115395
chr17	46143326	46143426	6784369	0	-	0.5	(0.476,0.515]	chr17	669216	221	INTRON	INTRON	KANSL1	ENSG00000120071.15	ENST00000574590.6:ENST00000572904.6:ENST00000432791.7:ENST00000575318.6:ENST00000638275.1:ENST00000262419.10:ENST00000648792.1:ENST00000639531.1:ENST00000639150.1:ENST00000639853.1:ENST00000571698.2:ENST00000639375.1:ENST00000638269.1:ENST00000576248.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	75	2	1.52755	2.200805	2.87406	0.0355377	0.00188729	0.151404	0.0391691
chr17	82546561	82546661	6692873	0	+	0.47	(0.44,0.476]	chr17	654627	259	INTRON	INTRON	FOXK2	ENSG00000141568.21	ENST00000473637.6:ENST00000335255.10:ENST00000527313.6:ENST00000570585.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	81	2	1.76195	2.2007849999999998	2.63962	0.0252608	0.00126329	0.12011	0.0329641
chr6	68793692	68793792	2887903	0	+	0.42	(0.408,0.44]	chr6	273730	1539	INTRON	INTRON	ADGRB3	ENSG00000135298.15	ENST00000370598.6:ENST00000684661.1:ENST00000546190.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	82	2	1.61024	2.20074	2.79124	0.0200746	0.00276922	0.121073	0.0469265
chr4	139333373	139333473	2050010	0	+	0.29	(0.28,0.32]	chr4	203286	308	INTRON	INTRON	NAA15	ENSG00000164134.13	ENST00000296543.10:ENST00000398947.1:ENST00000482087.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	56	2	1.94591	2.20068	2.45545	0.0438092	0.0228482	0.14901	0.125519
chr5	138324720	138324819	2732132	0	-	0.444444	(0.44,0.476]	chr5	257324	50	INTRON	INTRON	CDC25C	ENSG00000158402.21	ENST00000323760.11:ENST00000415130.6:ENST00000648466.1:ENST00000513970.5:ENST00000514555.5:ENST00000503022.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	81	2	1.93713	2.200675	2.46422	0.0138947	0.00282908	0.0955491	0.0491595
chr1	39576230	39576323	427794	0	-	0.451613	(0.44,0.476]	chr1	51959	4	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PABPC4	ENSG00000090621.15	ENST00000372858.8:ENST00000372856.7:ENST00000372857.7:ENST00000372862.7:ENST00000451091.2:ENST00000531243.2	protein_coding	protein_coding	protein_coding	protein_coding	39	444	2	1.97581	2.20067	2.42553	3.69215e-4	4.72495e-5	0.0172871	0.00593159
chr6	140171581	140171681	2968171	0	+	0.4	(0.378,0.408]	chr6	279015	225	INTRON	INTRON	ENSG00000288714	ENSG00000288714.1	ENST00000683950.1	lncRNA	lncRNA	lncRNA	lncRNA	4	51	2	2.16303	2.2006699999999997	2.23831	0.0252473	0.0179575	0.12011	0.114265
chr3	185812155	185812255	1886220	0	-	0.53	(0.515,0.57]	chr3	188573	1135	INTRON	INTRON	IGF2BP2	ENSG00000073792.16	ENST00000382199.7:ENST00000346192.7:ENST00000457616.6:ENST00000421047.3:ENST00000461957.5:ENST00000493302.5:ENST00000466476.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	42	2	2.1885	2.200615	2.21273	0.0202537	0.0196151	0.121364	0.109486
chr5	160012484	160012583	2528729	0	+	0.535354	(0.515,0.57]	chr5	241955	2	EXON_LNCRNA	EXON_LNCRNA:INTRON	TTC1	ENSG00000113312.12	ENST00000682719.1:ENST00000522793.5:ENST00000682151.1:ENST00000684137.1:ENST00000682245.1:ENST00000682220.1:ENST00000684018.1:ENST00000683219.1:ENST00000682172.1:ENST00000231238.10:ENST00000682131.1:ENST00000684515.1:ENST00000683631.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	42	2	2.1885	2.200615	2.21273	0.0202537	0.0196151	0.121364	0.109486
chr16	57773621	57773714	6493682	0	-	0.483871	(0.476,0.515]	chr16	628189	10	INTRON	INTRON	KIFC3	ENSG00000140859.16	ENST00000379655.8:ENST00000445690.7:ENST00000465878.6:ENST00000421376.6:ENST00000541240.5:ENST00000540079.6:ENST00000543930.5:ENST00000562903.5:ENST00000564136.5:ENST00000565481.5:ENST00000562503.5:ENST00000569222.5:ENST00000562311.5:ENST00000569112.5:ENST00000562984.5:ENST00000567204.5:ENST00000566648.5:ENST00000561524.5:ENST00000569619.5:ENST00000565351.5:ENST00000566975.5:ENST00000565684.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	60	2	1.59365	2.20047	2.80729	0.0306944	0.0126008	0.13151	0.0980703
chr3	172327352	172327452	1562441	0	+	0.6	(0.57,1]	chr3	161613	161	INTRON	INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000469491.5:ENST00000336824.8:ENST00000416957.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	31	2	1.89351	2.2004650000000003	2.50742	0.0255126	0.00631173	0.133676	0.0687526
chr1	1566013	1566112	360234	0	-	0.50505	(0.476,0.515]	chr1	41853	7	INTRON	INTRON	SSU72	ENSG00000160075.12	ENST00000291386.4:ENST00000378725.3:ENST00000359060.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	49	2	2.13304	2.200465	2.26789	0.024866	0.0176567	0.132101	0.105233
chr1	108958648	108958748	519130	0	-	0.5	(0.476,0.515]	chr1	60929	2	SS5_PROX	SS5_PROX:INTRON	CLCC1	ENSG00000121940.17	ENST00000690509.1:ENST00000687328.1:ENST00000685014.1:ENST00000685540.1:ENST00000686576.1:ENST00000688070.1:ENST00000691513.1:ENST00000686821.1:ENST00000692511.1:ENST00000689479.1:ENST00000687646.1:ENST00000687998.1:ENST00000687226.1:ENST00000693336.1:ENST00000689991.1:ENST00000687591.1:ENST00000691777.1:ENST00000690756.1:ENST00000688778.1:ENST00000685104.1:ENST00000689103.1:ENST00000687734.1:ENST00000686434.1:ENST00000685497.1:ENST00000691342.1:ENST00000686776.1:ENST00000692342.1:ENST00000689351.1:ENST00000692584.1:ENST00000692775.1:ENST00000687134.1:ENST00000675018.1:ENST00000690781.1:ENST00000691556.1:ENST00000689189.1:ENST00000687099.1:ENST00000685791.1:ENST00000687865.1:ENST00000687449.1:ENST00000688285.1:ENST00000369968.7:ENST00000674992.1:ENST00000675001.1:ENST00000369969.7:ENST00000356970.6:ENST00000688610.1:ENST00000675128.1:ENST00000693089.1:ENST00000675571.1:ENST00000675650.1:ENST00000369970.8:ENST00000674561.2:ENST00000675654.1:ENST00000675790.1:ENST00000675584.1:ENST00000692795.1:ENST00000691731.1:ENST00000689359.1:ENST00000676392.2:ENST00000676391.2:ENST00000676454.1:ENST00000674849.1:ENST00000675956.1:ENST00000302500.5:ENST00000675508.1:ENST00000688168.1:ENST00000693673.1:ENST00000692404.1:ENST00000686078.1:ENST00000690874.1:ENST00000692732.1:ENST00000685628.1:ENST00000676306.1:ENST00000676059.2:ENST00000674527.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	72	2	2.01953	2.2004099999999998	2.38129	0.0163662	0.00474233	0.109586	0.0600445
chr5	53993012	53993112	2617734	0	-	0.33	(0.32,0.35]	chr5	248835	810	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	161	2	2.12289	2.2004	2.27791	0.00371168	0.00121437	0.0535094	0.032255
chr17	66502176	66502276	6664294	0	+	0.32	(0.28,0.32]	chr17	650332	55	INTRON	INTRON	PRKCA	ENSG00000154229.12	ENST00000413366.8:ENST00000578063.5:ENST00000284384.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	105	2	1.96841	2.200355	2.4323	0.0124199	0.00540168	0.0973643	0.0644179
chr5	98930044	98930141	2439357	0	+	0.381443	(0.378,0.408]	chr5	234121	10	EXON_LNCRNA	EXON_LNCRNA:INTRON	CHD1-DT	ENSG00000248489.3	ENST00000513175.1:ENST00000693407.1:ENST00000692082.1:ENST00000670964.1	lncRNA	lncRNA	lncRNA	lncRNA	6	59	2	1.67073	2.20033	2.72993	0.0219426	0.0188736	0.123836	0.108861
chr15	22588666	22588763	5975498	0	+	0.340206	(0.32,0.35]	chr15	568248	9	INTRON	INTRON	HERC2P2	ENSG00000276550.5	ENST00000619021.4:ENST00000690192.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	11	143	2	1.85774	2.20031	2.54288	0.0061655	0.00151636	0.0712486	0.0352794
chr19	10325755	10325855	7135430	0	-	0.41	(0.408,0.44]	chr19	719358	18	INTRON	INTRON	RAVER1	ENSG00000161847.14	ENST00000617231.5:ENST00000592208.5:ENST00000611074.4:ENST00000615032.4:ENST00000591969.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	37	2	2.18807	2.200225	2.21238	0.0708044	0.0193525	0.184528	0.119831
chr2	58195871	58195971	1126288	0	-	0.42	(0.408,0.44]	chr2	120916	12	INTRON	INTRON	FANCL	ENSG00000115392.13	ENST00000696400.1:ENST00000403295.8:ENST00000696492.1:ENST00000427708.7:ENST00000696314.1:ENST00000696315.1:ENST00000696454.1:ENST00000696508.1:ENST00000696548.1:ENST00000696542.1:ENST00000696432.1:ENST00000696319.1:ENST00000403676.6:ENST00000696433.1:ENST00000696434.1:ENST00000696499.1:ENST00000696564.1:ENST00000402135.8:ENST00000696546.1:ENST00000233741.9:ENST00000696316.1:ENST00000696378.1:ENST00000696435.1:ENST00000696493.1:ENST00000696543.1:ENST00000696544.1:ENST00000696545.1:ENST00000696565.1:ENST00000696620.1:ENST00000696621.1:ENST00000696635.1:ENST00000696364.1:ENST00000696634.1:ENST00000696317.1:ENST00000696622.1:ENST00000696467.1:ENST00000696547.1:ENST00000449070.6:ENST00000696305.1:ENST00000417361.2:ENST00000696338.1:ENST00000696361.1:ENST00000696318.1:ENST00000696371.1:ENST00000696409.1:ENST00000696410.1:ENST00000696455.1:ENST00000696468.1:ENST00000696527.1:ENST00000696567.1:ENST00000696324.1:ENST00000696566.1:ENST00000696623.1:ENST00000446381.6:ENST00000696469.1:ENST00000696624.1:ENST00000696411.1:ENST00000696475.1:ENST00000470506.2:ENST00000696358.1:ENST00000696373.1:ENST00000696394.1:ENST00000696320.1:ENST00000696339.1:ENST00000696395.1:ENST00000696341.1:ENST00000696340.1:ENST00000696374.1:ENST00000696396.1:ENST00000696342.1:ENST00000696325.1:ENST00000696399.1:ENST00000696398.1:ENST00000696306.1:ENST00000696397.1:ENST00000696360.1:ENST00000696344.1:ENST00000696343.1:ENST00000696637.1:ENST00000696362.1:ENST00000696528.1:ENST00000696497.1:ENST00000696326.1:ENST00000696638.1:ENST00000696625.1:ENST00000696510.1:ENST00000696438.1:ENST00000696496.1:ENST00000696509.1:ENST00000696569.1:ENST00000696457.1:ENST00000696458.1:ENST00000696473.1:ENST00000696495.1:ENST00000696415.1:ENST00000696472.1:ENST00000696494.1:ENST00000696363.1:ENST00000696414.1:ENST00000696459.1:ENST00000696498.1:ENST00000696416.1:ENST00000696530.1:ENST00000696460.1:ENST00000696570.1:ENST00000696531.1:ENST00000696307.1:ENST00000696401.1:ENST00000696345.1:ENST00000696377.1:ENST00000696417.1:ENST00000696594.1:ENST00000696595.1:ENST00000696379.1:ENST00000696346.1:ENST00000696380.1:ENST00000696347.1:ENST00000696461.1:ENST00000696596.1:ENST00000696549.1:ENST00000696597.1:ENST00000696550.1:ENST00000696598.1:ENST00000696321.1:ENST00000696476.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	37	2	2.18807	2.200225	2.21238	0.0708044	0.0193525	0.184528	0.119831
chr6	20555956	20556055	2828598	0	+	0.424242	(0.408,0.44]	chr6	265644	69	INTRON	INTRON	CDKAL1	ENSG00000145996.11	ENST00000274695.8:ENST00000613575.4:ENST00000378610.1	protein_coding	protein_coding	protein_coding	protein_coding	3	37	2	2.18807	2.200225	2.21238	0.0708044	0.0193525	0.184528	0.119831
chr13	28253597	28253697	5461985	0	+	0.48	(0.476,0.515]	chr13	523271	132	INTRON	INTRON	PAN3	ENSG00000152520.14	ENST00000503791.5:ENST00000380958.8:ENST00000399613.1:ENST00000483842.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	67	2	1.63187	2.2002099999999998	2.76855	0.037661	0.00244302	0.14058	0.0456956
chr15	87580391	87580491	6255358	0	-	0.33	(0.32,0.35]	chr15	596826	370	INTRON	INTRON	ENSG00000259560	ENSG00000259560.2	ENST00000665121.1:ENST00000560439.1	lncRNA	lncRNA	lncRNA	lncRNA	3	43	2	1.83416	2.20017	2.56618	0.0631198	0.0274185	0.176946	0.136498
chr7	127349633	127349732	3633809	0	-	0.323232	(0.32,0.35]	chr7	337745	12	INTRON	INTRON	ZNF800	ENSG00000048405.11	ENST00000485577.1	protein_coding	processed_transcript	protein_coding	processed_transcript	3	43	2	1.83416	2.20017	2.56618	0.0631198	0.0274185	0.176946	0.136498
chr18	80123332	80123432	6938231	0	+	0.4	(0.378,0.408]	chr18	686196	53	INTRON	INTRON	ADNP2	ENSG00000101544.9	ENST00000262198.9:ENST00000560752.5:ENST00000559951.5:ENST00000560561.1:ENST00000561195.1	protein_coding	protein_coding	protein_coding	protein_coding	8	94	2	2.19294	2.20003	2.20712	0.00978751	0.00254418	0.0835427	0.0465115
chr7	138466400	138466500	3434702	0	+	0.29	(0.28,0.32]	chr7	319959	47	INTRON	INTRON	TRIM24	ENSG00000122779.18	ENST00000343526.9:ENST00000415680.6:ENST00000497516.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	18	235	2	1.62771	2.200025	2.77234	0.00690398	3.66735e-4	0.0751574	0.0177868
chr7	152378162	152378262	3680715	0	-	0.35	(0.32,0.35]	chr7	341660	191	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000682301.1:ENST00000452749.2:ENST00000680867.1:ENST00000683800.1:ENST00000684278.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	72	2	1.83416	2.200025	2.56589	0.0631198	0.00204522	0.176946	0.041908
chr9	131441917	131442015	4217453	0	+	0.336735	(0.32,0.35]	chr9	386746	25	INTRON	INTRON	PRRC2B	ENSG00000288701.1	ENST00000684596.1:ENST00000683519.1:ENST00000682501.1	protein_coding	protein_coding	protein_coding	protein_coding	6	65	2	1.50258	2.200005	2.89743	0.0399817	0.0127608	0.161534	0.0926667
chr1	21750908	21751006	396537	0	-	0.397959	(0.378,0.408]	chr1	47316	23	INTRON	INTRON	USP48	ENSG00000090686.16	ENST00000400301.5:ENST00000308271.14:ENST00000529637.5:ENST00000421625.6	protein_coding	protein_coding	protein_coding	protein_coding	6	72	2	2.11194	2.199935	2.28793	0.0292534	0.00291235	0.128055	0.0494641
chr2	97532684	97532784	1183652	0	-	0.39	(0.378,0.408]	chr2	126914	3	SS3_PROX	SS3_PROX:INTRON	ANKRD36B	ENSG00000196912.13	ENST00000359901.9:ENST00000258459.12	protein_coding	protein_coding	protein_coding	protein_coding	6	72	2	2.11194	2.199935	2.28793	0.0292534	0.00291235	0.128055	0.0494641
chr1	35885040	35885140	70657	0	+	0.41	(0.408,0.44]	chr1	9029	12	INTRON	INTRON	AGO1	ENSG00000092847.13	ENST00000373206.5:ENST00000373204.6:ENST00000674426.1:ENST00000674304.1	protein_coding	protein_coding	protein_coding	protein_coding	3	38	2	2.00228	2.19989	2.3975	0.040266	0.0389732	0.161534	0.143072
chr12	107076545	107076645	5404863	0	-	0.42	(0.408,0.44]	chr12	515739	31	INTRON	INTRON	CRY1	ENSG00000008405.12	ENST00000008527.10:ENST00000550633.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	38	2	2.00228	2.19989	2.3975	0.040266	0.0389732	0.161534	0.143072
chr2	187545037	187545137	1289432	0	-	0.5	(0.476,0.515]	chr2	135626	4	SS3_PROX	SS3_PROX:INTRON	TFPI	ENSG00000003436.16	ENST00000233156.9:ENST00000409676.5:ENST00000339091.8:ENST00000421427.5:ENST00000437725.5:ENST00000453013.5:ENST00000417013.5:ENST00000420747.1	protein_coding	protein_coding	protein_coding	protein_coding	10	114	2	1.76217	2.199885	2.6376	0.0111778	6.87765e-4	0.0937192	0.0240091
chr10	28575509	28575609	4414229	0	+	0.41	(0.408,0.44]	chr10	407148	371	INTRON	INTRON	WAC	ENSG00000095787.24	ENST00000680735.1:ENST00000375664.8:ENST00000428935.6:ENST00000651598.1:ENST00000628285.3:ENST00000681112.1:ENST00000679570.1:ENST00000375646.5:ENST00000354911.9:ENST00000347934.8:ENST00000420266.6:ENST00000651885.1:ENST00000651441.1:ENST00000679398.1:ENST00000424454.5:ENST00000442148.6:ENST00000448193.5:ENST00000414108.6:ENST00000679428.1:ENST00000439676.5:ENST00000345541.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	65	2	1.74555	2.199875	2.6542	0.0227514	0.0118908	0.117618	0.0962115
chr12	96280596	96280682	5394059	0	-	0.383721	(0.378,0.408]	chr12	514359	3	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CDK17	ENSG00000059758.8	ENST00000261211.8:ENST00000543119.6:ENST00000542666.5	protein_coding	protein_coding	protein_coding	protein_coding	2	28	2	2.13703	2.199775	2.26252	0.0797592	0.056222	0.19979	0.18407
chr19	53190919	53191019	7211259	0	-	0.4	(0.378,0.408]	chr19	731983	2	INTRON	INTRON	ZNF665	ENSG00000197497.11	ENST00000396424.5:ENST00000600412.1:ENST00000650736.1:ENST00000597544.5:ENST00000596373.1:ENST00000598440.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	28	2	2.13703	2.199775	2.26252	0.0797592	0.056222	0.19979	0.18407
chr2	71417902	71418001	807908	0	+	0.383838	(0.378,0.408]	chr2	90285	88	INTRON	INTRON	ZNF638	ENSG00000075292.19	ENST00000409544.5:ENST00000264447.9:ENST00000487638.5:ENST00000494241.5:ENST00000409407.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	28	2	2.13703	2.199775	2.26252	0.0797592	0.056222	0.19979	0.18407
chr3	52682233	52682333	1700737	0	-	0.39	(0.378,0.408]	chr3	175063	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	PBRM1	ENSG00000163939.18	ENST00000394830.7:ENST00000431678.5:ENST00000420148.5:ENST00000449505.5:ENST00000450271.5:ENST00000439181.5:ENST00000458294.5:ENST00000424867.1	protein_coding	protein_coding	protein_coding	protein_coding	2	28	2	2.13703	2.199775	2.26252	0.0797592	0.056222	0.19979	0.18407
chr7	128813129	128813229	3408972	0	+	0.38	(0.378,0.408]	chr7	318542	2	SS5_PROX	SS5_PROX:INTRON	CCDC136	ENSG00000128596.17	ENST00000378685.8:ENST00000464832.5:ENST00000297788.9:ENST00000487361.5:ENST00000480137.1:ENST00000494552.5:ENST00000528772.1:ENST00000464672.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	28	2	2.13703	2.199775	2.26252	0.0797592	0.056222	0.19979	0.18407
chr8	26366033	26366126	3716860	0	+	0.387097	(0.378,0.408]	chr8	345440	11	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	PPP2R2A	ENSG00000221914.11	ENST00000380737.8:ENST00000524169.5:ENST00000665949.1:ENST00000660435.1:ENST00000315985.7:ENST00000667651.1:ENST00000657943.1:ENST00000666129.1:ENST00000518215.5:ENST00000665751.1:ENST00000518890.5:ENST00000517754.1:ENST00000518208.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	28	2	2.13703	2.199775	2.26252	0.0797592	0.056222	0.19979	0.18407
chr1	28917671	28917771	58987	0	+	0.51	(0.476,0.515]	chr1	7621	25	INTRON	INTRON	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000647918.1:ENST00000646800.1:ENST00000644342.1:ENST00000646189.1:ENST00000482464.6:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000646260.1:ENST00000373798.5:ENST00000644600.1:ENST00000649674.1:ENST00000643173.1:ENST00000343067.9:ENST00000644780.1:ENST00000650265.1:ENST00000648181.1:ENST00000643604.1:ENST00000648891.1:ENST00000373797.2:ENST00000349460.9:ENST00000645184.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	99	2	1.20172	2.199765	3.19781	0.0495708	4.3655e-4	0.174681	0.0191798
chr1	71063785	71063884	482845	0	-	0.262626	[0,0.28]	chr1	57837	6	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ZRANB2	ENSG00000132485.14	ENST00000370920.8:ENST00000477096.1:ENST00000254821.10	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	16	212	2	1.49375	2.19975	2.90575	0.0143793	0.00111582	0.104562	0.0306655
chr12	111585560	111585660	5413095	0	-	0.5	(0.476,0.515]	chr12	516941	208	INTRON	INTRON	ATXN2	ENSG00000204842.18	ENST00000642389.2:ENST00000608853.5:ENST00000672613.1:ENST00000673436.1:ENST00000643669.2:ENST00000616825.4:ENST00000389153.10:ENST00000550104.5:ENST00000483311.6:ENST00000672335.1:ENST00000673557.1:ENST00000673283.1:ENST00000673449.1:ENST00000535949.5:ENST00000542287.6:ENST00000644883.1:ENST00000647305.1:ENST00000671792.1:ENST00000392645.6:ENST00000672105.1:ENST00000549455.1:ENST00000548492.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	36	2	1.99341	2.199745	2.40608	0.0425709	0.037389	0.155878	0.148082
chr4	126677470	126677570	2237484	0	-	0.34	(0.32,0.35]	chr4	219023	2120	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	8	112	2	1.8526	2.199745	2.54689	0.0332438	5.04008e-4	0.134145	0.0202328
chr15	65775268	65775368	6209626	0	-	0.52	(0.515,0.57]	chr15	592617	80	INTRON	INTRON	DENND4A	ENSG00000174485.16	ENST00000443035.8:ENST00000431932.6:ENST00000564674.5:ENST00000568515.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	16	153	2	1.95988	2.199725	2.43957	0.00171188	2.84252e-4	0.0381936	0.015495
chr12	120868217	120868317	5435546	0	-	0.42	(0.408,0.44]	chr12	519663	327	INTRON	INTRON	SPPL3	ENSG00000157837.16	ENST00000353487.7:ENST00000536996.5:ENST00000543608.5:ENST00000543854.5	protein_coding	protein_coding	protein_coding	protein_coding	5	59	2	2.08376	2.199705	2.31565	0.0154718	0.0129886	0.100909	0.0991656
chr21	10451226	10451326	7368507	0	+	0.42	(0.408,0.44]	chr21	751976	4	SS3_PROX	SS3_PROX:INTRON	BAGE2	ENSG00000187172.15	ENST00000474011.5:ENST00000470054.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	5	59	2	2.08376	2.199705	2.31565	0.0154718	0.0129886	0.100909	0.0991656
chr15	25419861	25419959	6121648	0	-	0.357143	(0.35,0.378]	chr15	582921	37	INTRON	INTRON	UBE3A	ENSG00000114062.22	ENST00000648336.2:ENST00000438097.6:ENST00000635914.1:ENST00000638155.1:ENST00000637886.1:ENST00000638011.1:ENST00000649550.1:ENST00000650110.1:ENST00000630424.2:ENST00000566215.5:ENST00000428984.6:ENST00000675177.1:ENST00000675593.1:ENST00000625778.3:ENST00000675000.1:ENST00000626793.2:ENST00000628733.2:ENST00000630907.2:ENST00000675038.1:ENST00000629886.2:ENST00000628267.2:ENST00000629252.2:ENST00000625681.2:ENST00000626589.2:ENST00000627018.1:ENST00000676452.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	102	2	1.84611	2.1996849999999997	2.55326	0.0204148	8.63206e-4	0.110862	0.0266494
chr11	43360709	43360808	4776561	0	+	0.343434	(0.32,0.35]	chr11	441679	12	INTRON	INTRON	TTC17	ENSG00000052841.15	ENST00000039989.9:ENST00000299240.10:ENST00000534347.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	52	2	2.02133	2.199635	2.37794	0.0498601	0.017146	0.156383	0.111072
chr16	1963256	1963356	6430557	0	-	0.4	(0.378,0.408]	chr16	618455	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPS2	ENSG00000140988.16	ENST00000343262.9:ENST00000526522.5:ENST00000533161.5:ENST00000527871.5:ENST00000530225.5:ENST00000531065.5:ENST00000527109.5:ENST00000533872.5:ENST00000532746.5:ENST00000533186.5:ENST00000529806.5:ENST00000534461.5:ENST00000527302.1:ENST00000526908.1:ENST00000527826.1:ENST00000563194.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	62	2	1.98888	2.199625	2.41037	0.0205239	0.0100185	0.110999	0.0880217
chr2	39108840	39108940	1102216	0	-	0.43	(0.408,0.44]	chr2	118304	105	INTRON	INTRON	SOS1	ENSG00000115904.15	ENST00000692089.1:ENST00000402219.8:ENST00000690876.1:ENST00000395038.6:ENST00000691229.1:ENST00000689668.1:ENST00000690679.1:ENST00000461545.2:ENST00000451331.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	83	2	1.92319	2.19962	2.47605	0.0247322	0.00116417	0.12011	0.0314524
chr21	37101442	37101542	7405122	0	+	0.33	(0.32,0.35]	chr21	754591	2	INTRON	INTRON	TTC3	ENSG00000182670.14	ENST00000492275.6:ENST00000418766.6:ENST00000485402.5:ENST00000450533.6:ENST00000438055.5:ENST00000696812.1:ENST00000696811.1:ENST00000463216.6:ENST00000481605.6:ENST00000540756.5:ENST00000494243.5:ENST00000411496.2:ENST00000399017.6:ENST00000354749.6:ENST00000479930.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	70	2	1.99307	2.19962	2.40617	0.04271	0.0040507	0.148082	0.0578376
chr4	126691166	126691266	2237621	0	-	0.37	(0.35,0.378]	chr4	219023	2257	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	8	106	2	1.7942	2.19961	2.60502	0.0378648	3.28626e-4	0.141212	0.0161279
chr15	68779596	68779693	6214550	0	-	0.494845	(0.476,0.515]	chr15	592987	12	UTR3	UTR3:EXON_MRNA	ANP32A	ENSG00000140350.15	ENST00000465139.6:ENST00000409628.6:ENST00000486054.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	36	2	1.8388	2.1995649999999998	2.56033	0.0564473	0.0287634	0.184423	0.127066
chr20	63876375	63876474	7300799	0	+	0.484848	(0.476,0.515]	chr20	743108	1	INTRON	INTRON	TPD52L2	ENSG00000101150.18	ENST00000611972.4:ENST00000615907.4:ENST00000369927.8:ENST00000346249.9:ENST00000348257.9:ENST00000352482.8:ENST00000351424.8:ENST00000217121.9:ENST00000358548.4	protein_coding	protein_coding	protein_coding	protein_coding	3	36	2	1.8388	2.1995649999999998	2.56033	0.0564473	0.0287634	0.184423	0.127066
chr7	64352341	64352441	3319828	0	+	0.49	(0.476,0.515]	chr7	308641	33	UTR3	UTR3:EXON_MRNA	ZNF736	ENSG00000234444.10	ENST00000423484.3	protein_coding	protein_coding	protein_coding	protein_coding	3	36	2	1.8388	2.1995649999999998	2.56033	0.0564473	0.0287634	0.184423	0.127066
chr18	9917417	9917517	6873375	0	+	0.49	(0.476,0.515]	chr18	680866	12	INTRON	INTRON	VAPA	ENSG00000101558.14	ENST00000400000.7:ENST00000577901.5:ENST00000340541.4:ENST00000585042.5:ENST00000578314.1:ENST00000584796.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	16	178	2	1.76705	2.199465	2.63188	0.00628413	8.28725e-5	0.0687104	0.00766104
chr17	22176341	22176441	6579427	0	+	0.53	(0.515,0.57]	chr17	639556	851	INTRON	INTRON	UBBP4	ENSG00000263563.7	ENST00000648259.1:ENST00000688301.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	13	117	2	1.95988	2.199445	2.43901	0.00171188	0.00146205	0.0381936	0.0346249
chr2	36879900	36879998	1093728	0	-	0.5	(0.476,0.515]	chr2	117173	15	INTRON	INTRON	STRN	ENSG00000115808.12	ENST00000263918.9:ENST00000379213.3:ENST00000495595.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	37	2	2.13854	2.19944	2.26034	0.0776563	0.0166235	0.196285	0.110511
chr18	1363542	1363642	6941820	0	-	0.45	(0.44,0.476]	chr18	686607	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	LINC00470:ENSG00000265417	ENSG00000132204.14:ENSG00000265417.1	ENST00000657423.1:ENST00000657618.1:ENST00000669242.1:ENST00000660475.1:ENST00000653775.1:ENST00000661931.1:ENST00000412816.7:ENST00000667416.1:ENST00000661852.1:ENST00000661646.1:ENST00000667776.1:ENST00000654559.1:ENST00000661233.1:ENST00000653213.1:ENST00000659094.1:ENST00000660964.1:ENST00000577403.6:ENST00000669153.1:ENST00000657121.1:ENST00000655957.1:ENST00000659289.1:ENST00000665133.1:ENST00000671558.1:ENST00000666542.1:ENST00000663512.1:ENST00000669312.1:ENST00000581430.5:ENST00000658090.1:ENST00000667225.1:ENST00000579735.1	lncRNA	lncRNA	lncRNA:processed_pseudogene	lncRNA:processed_pseudogene	14	144	2	1.36518	2.1994350000000003	3.03369	0.0276663	5.18787e-5	0.123904	0.00587266
chr22	20575332	20575432	7480052	0	+	0.38	(0.378,0.408]	chr22	763026	1	SS5_PROX	SS5_PROX:INTRON	MED15	ENSG00000099917.17	ENST00000433831.5:ENST00000292733.11:ENST00000263205.11:ENST00000406969.5:ENST00000382974.6:ENST00000492381.5:ENST00000478831.5:ENST00000489651.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	23	257	2	1.7631	2.199415	2.63573	0.00217234	1.13865e-4	0.043502	0.00960291
chr3	45729508	45729608	1417454	0	+	0.32	(0.28,0.32]	chr3	148713	56	INTRON	INTRON	SACM1L	ENSG00000211456.13	ENST00000455997.5:ENST00000418611.5:ENST00000672477.1:ENST00000441228.5:ENST00000389061.10:ENST00000672858.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	75	2	2.02902	2.199325	2.36963	0.0174423	0.0157022	0.11269	0.101453
chr7	155761912	155762012	3453087	0	+	0.3	(0.28,0.32]	chr7	322730	149	INTRON	INTRON	RBM33	ENSG00000184863.11	ENST00000401878.8:ENST00000392761.3:ENST00000438356.1:ENST00000341148.7	protein_coding	protein_coding	protein_coding	protein_coding	5	75	2	2.02902	2.199325	2.36963	0.0174423	0.0157022	0.11269	0.101453
chr2	171925231	171925329	918386	0	+	0.520408	(0.515,0.57]	chr2	101177	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HAT1	ENSG00000128708.13	ENST00000412731.5:ENST00000264108.5:ENST00000457761.6:ENST00000494601.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	44	2	1.86007	2.1992599999999998	2.53845	0.0526611	0.00632226	0.178401	0.0687526
chr1	175968297	175968397	589303	0	-	0.33	(0.32,0.35]	chr1	70870	207	INTRON	INTRON	COP1	ENSG00000143207.21	ENST00000367669.8:ENST00000367667.5:ENST00000461830.6:ENST00000367666.5:ENST00000649803.1:ENST00000308769.12	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	42	2	1.95271	2.199255	2.4458	0.0431213	0.0425977	0.162255	0.148082
chr12	110321393	110321492	5226504	0	+	0.333333	(0.32,0.35]	chr12	495250	243	INTRON	INTRON	ATP2A2	ENSG00000174437.18	ENST00000308664.10:ENST00000539276.7:ENST00000377685.9:ENST00000548169.2:ENST00000550248.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	42	2	1.95271	2.199255	2.4458	0.0431213	0.0425977	0.162255	0.148082
chr3	6570777	6570877	1356950	0	+	0.52	(0.515,0.57]	chr3	142512	121	INTRON	INTRON	ENSG00000189229	ENSG00000189229.12	ENST00000433639.1:ENST00000655754.1:ENST00000653839.1:ENST00000662846.1:ENST00000414438.2:ENST00000658468.1:ENST00000669512.1:ENST00000667028.1:ENST00000655541.1:ENST00000668643.1:ENST00000671568.1:ENST00000671036.1:ENST00000669798.1:ENST00000655753.1:ENST00000655856.1:ENST00000658398.1:ENST00000661518.1:ENST00000661279.1:ENST00000655495.1:ENST00000663041.1:ENST00000659827.1:ENST00000667716.1:ENST00000662508.1:ENST00000668416.1:ENST00000658133.1:ENST00000342990.4:ENST00000660054.1:ENST00000671370.1	lncRNA	lncRNA	lncRNA	lncRNA	5	53	2	2.11313	2.199235	2.28534	0.0256725	0.0061678	0.133676	0.067653
chr21	37369029	37369129	7406243	0	+	0.23	[0,0.28]	chr21	754846	5	INTRON	INTRON	DYRK1A	ENSG00000157540.22	ENST00000646523.1:ENST00000647425.1:ENST00000647188.2:ENST00000647504.1:ENST00000644942.1:ENST00000338785.8:ENST00000643624.1:ENST00000643551.1:ENST00000426672.6	protein_coding	protein_coding	protein_coding	protein_coding	7	119	2	2.16951	2.1992	2.22889	0.0128832	0.0065865	0.0926667	0.0737338
chr17	67364942	67365039	6826131	0	-	0.536082	(0.515,0.57]	chr17	674633	17	INTRON	INTRON	PSMD12	ENSG00000197170.10	ENST00000356126.8:ENST00000357146.4:ENST00000584008.5:ENST00000584289.5:ENST00000581618.1:ENST00000579365.5:ENST00000578015.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	52	2	1.67758	2.19919	2.7208	0.0471728	0.00306828	0.168737	0.0494933
chrX	154692123	154692222	7914722	0	-	0.333333	(0.32,0.35]	chrX	806068	115	INTRON	INTRON	GAB3	ENSG00000160219.12	ENST00000496390.5:ENST00000424127.3:ENST00000369575.7:ENST00000369568.8:ENST00000475685.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	57	2	1.99307	2.199185	2.4053	0.04271	0.0108284	0.148082	0.0920575
chr1	45551455	45551555	92995	0	+	0.47	(0.44,0.476]	chr1	12508	3	SS5_PROX	SS5_PROX:INTRON	AKR1A1	ENSG00000117448.14	ENST00000372070.7:ENST00000621846.4:ENST00000434299.5:ENST00000351829.9:ENST00000496999.5:ENST00000476957.5:ENST00000481885.5:ENST00000471651.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	68	2	1.38039	2.199105	3.01782	0.0762718	7.8136e-4	0.195539	0.0257169
chr19	1075179	1075279	6993728	0	+	0.47	(0.44,0.476]	chr19	692777	3	SS5_PROX	SS5_PROX:INTRON	ARHGAP45	ENSG00000180448.11	ENST00000539243.6:ENST00000313093.7:ENST00000587602.5:ENST00000591293.2:ENST00000590214.5:ENST00000586866.5:ENST00000543365.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	68	2	1.38039	2.199105	3.01782	0.0762718	7.8136e-4	0.195539	0.0257169
chr9	131168010	131168109	4216066	0	+	0.454545	(0.44,0.476]	chr9	386613	35	INTRON	INTRON	NUP214	ENSG00000126883.19	ENST00000695497.1:ENST00000695498.1:ENST00000695496.1:ENST00000695495.1:ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000525980.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	16	176	2	1.79684	2.19904	2.60124	0.00362703	2.61743e-4	0.055479	0.0149313
chr19	15250081	15250178	7146561	0	-	0.659794	(0.57,1]	chr19	721885	4	INTRON	INTRON	BRD4	ENSG00000141867.19	ENST00000679869.1:ENST00000263377.6:ENST00000371835.8	protein_coding	protein_coding	protein_coding	protein_coding	7	42	2	1.87172	2.1990250000000002	2.52633	0.0152293	0.0018535	0.0996307	0.039946
chr1	167971845	167971944	248844	0	+	0.444444	(0.44,0.476]	chr1	29558	22	INTRON	INTRON	DCAF6	ENSG00000143164.16	ENST00000450548.5:ENST00000470919.5:ENST00000432587.6:ENST00000367843.7:ENST00000470721.5:ENST00000367840.4:ENST00000312263.10:ENST00000455334.5:ENST00000491067.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	67	2	1.96805	2.199005	2.42996	0.0109533	0.0104804	0.0925675	0.0855777
chr22	49654924	49655023	7602637	0	-	0.363636	(0.35,0.378]	chr22	778594	275	INTRON	INTRON	MIR3667HG	ENSG00000188511.13	ENST00000414287.5:ENST00000416411.1:ENST00000689875.1:ENST00000400023.5:ENST00000405854.5	lncRNA	lncRNA	lncRNA	lncRNA	8	89	2	1.66633	2.198985	2.73164	0.0168241	0.00387645	0.11068	0.0543578
chr19	28492552	28492652	7166020	0	-	0.48	(0.476,0.515]	chr19	724189	243	INTRON	INTRON	ENSG00000283403:ENSG00000267243	ENSG00000283403.1:ENSG00000267243.6	ENST00000592347.5:ENST00000593065.5	lncRNA	lncRNA	lncRNA	lncRNA	6	56	2	1.57103	2.19888	2.82673	0.0307896	0.0134403	0.143385	0.0946278
chr4	110195048	110195148	2227699	0	-	0.42	(0.408,0.44]	chr4	218024	891	INTRON	INTRON	ELOVL6	ENSG00000170522.10	ENST00000394607.7:ENST00000302274.8:ENST00000514184.5:ENST00000506625.5:ENST00000506461.1:ENST00000503885.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	82	2	2.00842	2.19885	2.38928	0.0108512	0.0039105	0.0873034	0.0569957
chr5	131379845	131379945	2485799	0	+	0.41	(0.408,0.44]	chr5	237134	199	INTRON	INTRON	CDC42SE2	ENSG00000158985.14	ENST00000395246.5:ENST00000505065.2:ENST00000503291.5:ENST00000360515.7	protein_coding	protein_coding	protein_coding	protein_coding	7	82	2	2.00842	2.19885	2.38928	0.0108512	0.0039105	0.0873034	0.0569957
chr3	9410023	9410122	1359008	0	+	0.363636	(0.35,0.378]	chr3	142655	117	INTRON	INTRON	SETD5	ENSG00000168137.20	ENST00000402198.7:ENST00000431285.5:ENST00000683012.1:ENST00000463180.5:ENST00000478475.5:ENST00000415650.5:ENST00000682536.1:ENST00000663774.1:ENST00000665872.1:ENST00000666307.1:ENST00000693430.1:ENST00000691925.1:ENST00000684606.1:ENST00000691175.1:ENST00000688835.1:ENST00000683262.1:ENST00000443339.5:ENST00000406341.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	48	2	1.92704	2.198845	2.47065	0.0386172	0.0228255	0.142656	0.125469
chr3	172782920	172783014	1563551	0	+	0.37234	(0.35,0.378]	chr3	161789	3	INTRON	INTRON	ECT2	ENSG00000114346.14	ENST00000232458.9:ENST00000540509.5:ENST00000392692.8:ENST00000417960.5:ENST00000441497.6:ENST00000444250.1	protein_coding	protein_coding	protein_coding	protein_coding	5	60	2	2.15229	2.19882	2.24535	0.0647516	0.00545124	0.179192	0.0669407
chr13	97225931	97226031	5518434	0	+	0.31	(0.28,0.32]	chr13	527710	30	INTRON	INTRON	MBNL2	ENSG00000139793.20	ENST00000397601.5:ENST00000343600.9:ENST00000376673.8:ENST00000679496.1:ENST00000685165.1:ENST00000345429.10:ENST00000469707.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	57	2	2.06884	2.198775	2.32871	0.0581621	0.0152581	0.167723	0.108569
chr10	72528102	72528201	4645943	0	-	0.434343	(0.408,0.44]	chr10	427425	30	INTRON	INTRON	MICU1	ENSG00000107745.20	ENST00000361114.10:ENST00000476605.7:ENST00000642044.1:ENST00000635239.1:ENST00000604238.2:ENST00000603011.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	37	2	1.81572	2.198755	2.58179	0.0626779	0.024638	0.175915	0.131869
chrX	124052778	124052876	7717678	0	+	0.438776	(0.408,0.44]	chrX	789547	10	INTRON	INTRON	STAG2	ENSG00000101972.20	ENST00000218089.13:ENST00000455404.5:ENST00000483575.5:ENST00000687810.1:ENST00000687071.1:ENST00000469481.1:ENST00000371160.5:ENST00000687852.1:ENST00000371145.8:ENST00000692982.1:ENST00000371157.7:ENST00000691035.1:ENST00000686802.1:ENST00000691383.1:ENST00000686127.1:ENST00000371144.7:ENST00000466748.5:ENST00000471107.1:ENST00000693144.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	37	2	1.81572	2.198755	2.58179	0.0626779	0.024638	0.175915	0.131869
chr12	53666899	53666996	5329365	0	-	0.391753	(0.378,0.408]	chr12	508422	11	INTRON	INTRON	ATP5MC2	ENSG00000135390.21	ENST00000550241.1:ENST00000673498.1:ENST00000394349.9:ENST00000552242.5:ENST00000495596.5:ENST00000549164.5:ENST00000338662.6:ENST00000549748.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	61	2	2.18512	2.19875	2.21238	0.0218124	0.00902136	0.11491	0.0851259
chr1	10260922	10261018	21158	0	+	0.302083	(0.28,0.32]	chr1	2058	3	INTRON	INTRON	KIF1B	ENSG00000054523.20	ENST00000676179.1:ENST00000377093.9:ENST00000696500.1:ENST00000696501.1:ENST00000263934.10:ENST00000696502.1:ENST00000696503.1:ENST00000696504.1:ENST00000377086.5:ENST00000377083.5:ENST00000377081.5:ENST00000696506.1:ENST00000620295.2:ENST00000622724.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	46	2	2.13651	2.198705	2.2609	0.0671429	0.0265696	0.183051	0.134088
chr10	110123425	110123516	4519565	0	+	0.285714	(0.28,0.32]	chr10	416837	8	INTRON	INTRON	ADD3	ENSG00000148700.15	ENST00000360162.7:ENST00000277900.12:ENST00000356080.9:ENST00000486014.1:ENST00000488837.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	46	2	2.13651	2.198705	2.2609	0.0671429	0.0265696	0.183051	0.134088
chr2	43937474	43937574	1110003	0	-	0.29	(0.28,0.32]	chr2	119016	22	INTRON	INTRON	LRPPRC	ENSG00000138095.20	ENST00000260665.12:ENST00000682308.1:ENST00000683459.1:ENST00000683623.1:ENST00000683125.1:ENST00000683994.1:ENST00000684619.1:ENST00000683833.1:ENST00000682546.1:ENST00000682585.1:ENST00000683220.1:ENST00000683796.1:ENST00000682607.1:ENST00000683590.1:ENST00000684306.1:ENST00000683213.1:ENST00000682779.1:ENST00000682885.1:ENST00000684743.1:ENST00000683346.1:ENST00000683072.1:ENST00000682303.1:ENST00000683329.1:ENST00000682933.1:ENST00000684383.1:ENST00000682480.1:ENST00000684290.1:ENST00000684341.1:ENST00000682595.1:ENST00000683645.1:ENST00000683802.1:ENST00000682845.1:ENST00000684397.1:ENST00000681961.1:ENST00000683694.1:ENST00000683989.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	46	2	2.13651	2.198705	2.2609	0.0671429	0.0265696	0.183051	0.134088
chr4	126520423	126520523	2235913	0	-	0.33	(0.32,0.35]	chr4	219023	549	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	8	109	2	2.12641	2.19869	2.27097	0.00815266	0.00347642	0.0766625	0.0540643
chr2	20249388	20249488	1075742	0	-	0.43	(0.408,0.44]	chr2	114915	8	UTR3	UTR3:EXON_MRNA	PUM2	ENSG00000055917.16	ENST00000338086.9:ENST00000361078.7	protein_coding	protein_coding	protein_coding	protein_coding	5	61	2	2.1226	2.19862	2.27464	0.0158016	0.012812	0.109464	0.0926667
chr12	56597349	56597447	5335277	0	-	0.479592	(0.476,0.515]	chr12	509966	19	UTR3	UTR3:EXON_MRNA	BAZ2A	ENSG00000076108.12	ENST00000379441.7:ENST00000549884.6:ENST00000551812.5	protein_coding	protein_coding	protein_coding	protein_coding	12	128	2	1.88936	2.19857	2.50778	0.00361879	0.00128608	0.0554656	0.0328018
chr2	55020200	55020300	1121104	0	-	0.33	(0.32,0.35]	chr2	120149	58	INTRON	INTRON	RTN4	ENSG00000115310.19	ENST00000404909.5:ENST00000394611.6:ENST00000317610.11:ENST00000357732.8:ENST00000337526.11:ENST00000357376.7:ENST00000405240.5:ENST00000438462.1	protein_coding	protein_coding	protein_coding	protein_coding	11	146	2	2.05211	2.1985599999999996	2.34501	0.0106769	5.76958e-4	0.0861859	0.0218253
chr19	10800429	10800526	7014615	0	+	0.597938	(0.57,1]	chr19	697005	15	INTRON	INTRON	DNM2	ENSG00000079805.19	ENST00000683738.1:ENST00000682285.1:ENST00000355667.11:ENST00000389253.9:ENST00000585892.5:ENST00000359692.10:ENST00000408974.8:ENST00000587830.2:ENST00000587329.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	35	2	1.21403	2.198515	3.183	0.0635872	0.00254356	0.198385	0.0448135
chr3	150542867	150542963	1841164	0	-	0.395833	(0.378,0.408]	chr3	185237	10	UTR3	UTR3:EXON_MRNA	SERP1	ENSG00000120742.11	ENST00000479209.1:ENST00000239944.7	protein_coding	protein_coding	protein_coding	protein_coding	9	110	2	1.82119	2.1983699999999997	2.57555	0.0214651	3.56957e-4	0.114274	0.0169148
chr1	167247162	167247261	245113	0	+	0.424242	(0.408,0.44]	chr1	29251	52	INTRON	INTRON	POU2F1	ENSG00000143190.23	ENST00000559038.5:ENST00000367866.7:ENST00000557909.5:ENST00000271411.8:ENST00000429375.6:ENST00000560232.6:ENST00000442313.5:ENST00000367865.5:ENST00000492850.5:ENST00000541643.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	72	2	1.78881	2.19833	2.60785	0.0370259	0.00146754	0.139194	0.035104
chr12	62519722	62519822	5151699	0	+	0.3	(0.28,0.32]	chr12	487506	107	INTRON	INTRON	MON2	ENSG00000061987.16	ENST00000641654.1:ENST00000546600.5:ENST00000393630.8:ENST00000547095.5:ENST00000552738.5:ENST00000393629.6:ENST00000552115.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	99	2	2.17573	2.19821	2.22069	0.0243177	0.00339266	0.12011	0.0536193
chr16	21434251	21434351	6460657	0	-	0.49	(0.476,0.515]	chr16	623222	28	INTRON	INTRON	NPIPB3	ENSG00000169246.16	ENST00000521589.5:ENST00000545358.5:ENST00000543368.1:ENST00000544154.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	24	265	2	2.02653	2.198175	2.36982	9.35515e-4	1.14004e-4	0.0280699	0.0091431
chr7	105084077	105084175	3375342	0	+	0.387755	(0.378,0.408]	chr7	315947	19	INTRON	INTRON	KMT2E	ENSG00000005483.22	ENST00000257745.9:ENST00000334884.9:ENST00000311117.8:ENST00000478990.5:ENST00000476671.5:ENST00000667857.1:ENST00000482560.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	63	2	1.34117	2.198095	3.05502	0.0505568	0.00689519	0.17538	0.0717484
chr1	688626	688726	356834	0	-	0.28	[0,0.28]	chr1	41087	556	INTRON	INTRON	ENSG00000230021	ENSG00000230021.10	ENST00000419394.2:ENST00000634337.2:ENST00000635509.2:ENST00000648019.1:ENST00000440200.5	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	3	52	2	1.95356	2.19799	2.44242	0.0491024	0.0463152	0.166231	0.155269
chr1	1839982	1840082	362330	0	-	0.2	[0,0.28]	chr1	42310	3	SS3_PROX	SS3_PROX:INTRON	GNB1	ENSG00000078369.18	ENST00000610897.4:ENST00000615252.4:ENST00000378609.9:ENST00000439272.6:ENST00000434686.6:ENST00000472614.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	52	2	1.95356	2.19799	2.44242	0.0491024	0.0463152	0.166231	0.155269
chr15	63723755	63723855	6199777	0	-	0.25	[0,0.28]	chr15	591335	4	SS3_PROX	SS3_PROX:INTRON	HERC1	ENSG00000103657.14	ENST00000443617.7:ENST00000561400.1	protein_coding	protein_coding	protein_coding	protein_coding	3	52	2	1.95356	2.19799	2.44242	0.0491024	0.0463152	0.166231	0.155269
chr16	58529845	58529945	6495319	0	-	0.25	[0,0.28]	chr16	628412	2	SS5_PROX	SS5_PROX:INTRON	CNOT1	ENSG00000125107.19	ENST00000317147.10:ENST00000563130.5:ENST00000569240.5:ENST00000567188.5:ENST00000570139.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	52	2	1.95356	2.19799	2.44242	0.0491024	0.0463152	0.166231	0.155269
chr21	22365796	22365896	7386026	0	+	0.24	[0,0.28]	chr21	752727	1526	INTRON	INTRON	ENSG00000226043	ENSG00000226043.2	ENST00000667099.1:ENST00000654607.1:ENST00000444130.1	lncRNA	lncRNA	lncRNA	lncRNA	3	52	2	1.95356	2.19799	2.44242	0.0491024	0.0463152	0.166231	0.155269
chr8	15763305	15763404	3706385	0	+	0.272727	[0,0.28]	chr8	343623	51	INTRON	INTRON	TUSC3	ENSG00000104723.21	ENST00000382020.8:ENST00000515859.5:ENST00000506802.5:ENST00000503731.6:ENST00000510836.5:ENST00000508446.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	52	2	1.95356	2.19799	2.44242	0.0491024	0.0463152	0.166231	0.155269
chr17	66533341	66533441	6664606	0	+	0.52	(0.515,0.57]	chr17	650332	367	INTRON	INTRON	PRKCA	ENSG00000154229.12	ENST00000413366.8:ENST00000578063.5:ENST00000284384.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	51	2	2.06758	2.1979699999999998	2.32836	0.0140038	0.0126662	0.0982897	0.0959618
chr3	43703483	43703582	1410305	0	+	0.323232	(0.32,0.35]	chr3	147937	5	INTRON	INTRON	ABHD5	ENSG00000011198.10	ENST00000643520.1:ENST00000458276.7:ENST00000649763.1:ENST00000643140.1:ENST00000643500.1:ENST00000644371.2:ENST00000013894.3:ENST00000646378.1:ENST00000643477.1:ENST00000646799.1:ENST00000454293.2:ENST00000642351.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	66	2	1.65179	2.1979699999999998	2.74415	0.0245569	0.0198267	0.131869	0.109608
chr1	31047227	31047327	412711	0	-	0.41	(0.408,0.44]	chr1	49733	180	INTRON	INTRON	PUM1	ENSG00000134644.16	ENST00000426105.7:ENST00000373747.7:ENST00000257075.9:ENST00000424085.6:ENST00000525843.5:ENST00000440538.6:ENST00000373741.8:ENST00000373742.6:ENST00000526215.5:ENST00000525948.5:ENST00000480602.1:ENST00000524516.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	56	2	1.49789	2.19792	2.89795	0.0390091	0.0110735	0.161009	0.0873897
chr1	100061834	100061891	171845	0	+	0.421053	(0.408,0.44]	chr1	18618	1	CDS	CDS:UTR3:EXON_MRNA	ENSG00000283761:MFSD14A	ENSG00000283761.1:ENSG00000156875.14	ENST00000638792.1:ENST00000638968.1:ENST00000639040.1:ENST00000639037.1:ENST00000638779.1:ENST00000639171.1:ENST00000640238.1:ENST00000640357.1:ENST00000370152.8:ENST00000421661.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	56	2	1.49789	2.19792	2.89795	0.0390091	0.0110735	0.161009	0.0873897
chr10	73051349	73051449	4647384	0	-	0.36	(0.35,0.378]	chr10	427523	1	SS3_PROX	SS3_PROX:INTRON	P4HA1	ENSG00000122884.13	ENST00000394890.7:ENST00000307116.6:ENST00000373008.6:ENST00000440381.5:ENST00000263556.3	protein_coding	protein_coding	protein_coding	protein_coding	9	113	2	2.0239	2.19785	2.3718	0.0110441	0.00112328	0.0873897	0.0308177
chr18	9106575	9106674	6868632	0	+	0.333333	(0.32,0.35]	chr18	680510	12	INTRON	INTRON	NDUFV2	ENSG00000178127.13	ENST00000577703.1:ENST00000318388.11:ENST00000583375.5:ENST00000400033.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	110	2	1.92705	2.1978150000000003	2.46858	0.0267365	7.56101e-4	0.123349	0.0251966
chr12	111574272	111574372	5412982	0	-	0.35	(0.32,0.35]	chr12	516941	95	INTRON	INTRON	ATXN2	ENSG00000204842.18	ENST00000642389.2:ENST00000608853.5:ENST00000672613.1:ENST00000673436.1:ENST00000643669.2:ENST00000616825.4:ENST00000389153.10:ENST00000550104.5:ENST00000483311.6:ENST00000672335.1:ENST00000673557.1:ENST00000673283.1:ENST00000673449.1:ENST00000535949.5:ENST00000542287.6:ENST00000644883.1:ENST00000647305.1:ENST00000671792.1:ENST00000392645.6:ENST00000672105.1:ENST00000549455.1:ENST00000548492.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	42	2	2.01768	2.19781	2.37794	0.0498601	0.0361337	0.156383	0.152563
chr7	74246361	74246461	3555695	0	-	0.34	(0.32,0.35]	chr7	331012	3	SS5_PROX	SS5_PROX:INTRON	RFC2	ENSG00000049541.11	ENST00000352131.7:ENST00000055077.8:ENST00000621097.4:ENST00000494019.5:ENST00000470266.5:ENST00000480432.5:ENST00000479105.6:ENST00000491206.5:ENST00000493156.6:ENST00000463194.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	42	2	2.01768	2.19781	2.37794	0.0498601	0.0361337	0.156383	0.152563
chr8	140987043	140987142	4079936	0	-	0.323232	(0.32,0.35]	chr8	370590	25	INTRON	INTRON	PTK2	ENSG00000169398.20	ENST00000696786.1:ENST00000522684.5:ENST00000395218.3:ENST00000521059.5:ENST00000519993.5:ENST00000340930.7:ENST00000524357.5:ENST00000521791.5:ENST00000523067.5:ENST00000520828.5:ENST00000519881.5:ENST00000520892.5:ENST00000517453.5:ENST00000520045.5:ENST00000521332.5:ENST00000524040.5:ENST00000523679.1:ENST00000524257.5:ENST00000523797.1:ENST00000519635.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	42	2	2.01768	2.19781	2.37794	0.0498601	0.0361337	0.156383	0.152563
chr1	168019444	168019544	249327	0	+	0.39	(0.378,0.408]	chr1	29610	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	DCAF6	ENSG00000143164.16	ENST00000432587.6:ENST00000367843.7:ENST00000470721.5:ENST00000367840.4:ENST00000312263.10:ENST00000460432.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	14	137	2	1.42112	2.1976999999999998	2.97428	0.0174084	3.71504e-4	0.112632	0.0178698
chr6	4061211	4061310	2790114	0	+	0.383838	(0.378,0.408]	chr6	263563	7	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PRPF4B	ENSG00000112739.17	ENST00000480058.5:ENST00000337659.11:ENST00000481109.5:ENST00000463634.6:ENST00000494674.1:ENST00000490653.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	14	137	2	1.42112	2.1976999999999998	2.97428	0.0174084	3.71504e-4	0.112632	0.0178698
chr9	36338862	36338961	4249214	0	-	0.333333	(0.32,0.35]	chr9	391380	26	UTR3	UTR3:EXON_MRNA	RNF38	ENSG00000137075.18	ENST00000353739.8:ENST00000259605.11:ENST00000377885.6:ENST00000357058.7:ENST00000350199.8:ENST00000611646.4	protein_coding	protein_coding	protein_coding	protein_coding	3	42	2	1.88468	2.1976449999999996	2.51061	0.0515071	0.0364463	0.176696	0.138959
chr6	159749815	159749912	3022620	0	+	0.381443	(0.378,0.408]	chr6	281922	13	UTR3	UTR3:EXON_MRNA:INTRON	WTAP	ENSG00000146457.16	ENST00000358372.8:ENST00000650096.1:ENST00000621533.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	130	2	2.17179	2.1976	2.22341	0.00295931	0.00178023	0.0486566	0.039274
chr9	135954523	135954613	4372502	0	-	0.644444	(0.57,1]	chr9	402547	4	INTRON	INTRON	UBAC1	ENSG00000130560.9	ENST00000371756.4:ENST00000478485.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	43	2	1.80787	2.1976	2.58733	0.0086124	0.00454222	0.0838082	0.0595107
chr12	109110806	109110899	5221319	0	+	0.311828	(0.28,0.32]	chr12	494357	10	UTR3	UTR3:EXON_MRNA	UNG	ENSG00000076248.11	ENST00000242576.7:ENST00000336865.6:ENST00000539287.5:ENST00000446767.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	49	2	2.09794	2.19759	2.29724	0.0554156	0.0340483	0.18407	0.134863
chr12	50023547	50023645	5322663	0	-	0.438776	(0.408,0.44]	chr12	507420	20	INTRON	INTRON	RACGAP1	ENSG00000161800.13	ENST00000312377.10:ENST00000427314.6:ENST00000454520.6:ENST00000547905.5:ENST00000548320.5:ENST00000548598.5:ENST00000552310.5:ENST00000550149.5:ENST00000546786.5:ENST00000546595.5:ENST00000551145.5:ENST00000548824.5:ENST00000548644.5:ENST00000551260.5:ENST00000546723.5:ENST00000552921.5:ENST00000548247.1:ENST00000552157.5:ENST00000546764.5:ENST00000549777.5:ENST00000550651.5:ENST00000552004.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	45	2	2.03431	2.19752	2.36073	0.0481658	0.0154896	0.153019	0.108998
chr1	88735290	88735390	156279	0	+	0.47	(0.44,0.476]	chr1	17045	503	INTRON	INTRON	PKN2	ENSG00000065243.20	ENST00000316005.11:ENST00000370521.8:ENST00000370513.9	protein_coding	protein_coding	protein_coding	protein_coding	3	37	2	1.9039	2.19751	2.49112	0.0501498	0.0315968	0.156383	0.144381
chr16	2506624	2506704	6278625	0	+	0.4625	(0.44,0.476]	chr16	600541	1	SS3_PROX	SS3_PROX:INTRON	TBC1D24	ENSG00000162065.14	ENST00000636980.1	protein_coding	processed_transcript	protein_coding	processed_transcript	3	37	2	1.9039	2.19751	2.49112	0.0501498	0.0315968	0.156383	0.144381
chr14	103500600	103500700	5826828	0	+	0.43	(0.408,0.44]	chr14	552949	4	SS5_PROX	SS5_PROX:INTRON	MARK3	ENSG00000075413.19	ENST00000678179.1:ENST00000676838.1:ENST00000677348.1:ENST00000677404.1:ENST00000676694.1:ENST00000676938.1:ENST00000678619.1:ENST00000676897.1:ENST00000677214.1:ENST00000677942.1:ENST00000676830.1:ENST00000678999.1:ENST00000677228.1:ENST00000556744.2:ENST00000677104.1:ENST00000679330.1:ENST00000560417.6:ENST00000440884.7:ENST00000677035.1:ENST00000678022.1:ENST00000677560.1:ENST00000561314.6:ENST00000429436.7:ENST00000677118.1:ENST00000676564.1:ENST00000678169.1:ENST00000678175.1:ENST00000678897.1:ENST00000678278.1:ENST00000676645.1:ENST00000677829.1:ENST00000678302.1:ENST00000677133.1:ENST00000678207.1:ENST00000677360.1:ENST00000676905.1:ENST00000678343.1:ENST00000677347.1:ENST00000678071.1:ENST00000677432.1:ENST00000678237.1:ENST00000677604.1:ENST00000676518.1:ENST00000677051.1:ENST00000677857.1:ENST00000677869.1:ENST00000416682.6:ENST00000303622.13:ENST00000216288.11:ENST00000679105.1:ENST00000553942.5:ENST00000335102.9:ENST00000678091.1:ENST00000561071.5:ENST00000676745.1:ENST00000554627.5:ENST00000679299.1:ENST00000678661.1:ENST00000677352.1:ENST00000676944.1:ENST00000677023.1:ENST00000678213.1:ENST00000678373.1:ENST00000679005.1:ENST00000556463.5:ENST00000558787.1:ENST00000555235.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	50	2	2.07919	2.19742	2.31565	0.0291499	0.0154718	0.14147	0.100909
chr3	196065800	196065900	1897381	0	-	0.48	(0.476,0.515]	chr3	189940	2	SS3_PROX	SS3_PROX:INTRON	TFRC	ENSG00000072274.13	ENST00000420415.5:ENST00000360110.9:ENST00000392396.7	protein_coding	protein_coding	protein_coding	protein_coding	22	232	2	2.09715	2.19733	2.29751	8.34192e-4	3.05931e-4	0.0266389	0.0156149
chr8	129503156	129503256	4060313	0	-	0.32	(0.28,0.32]	chr8	369642	80	INTRON	INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1:ENST00000676273.1:ENST00000667643.1:ENST00000668791.1:ENST00000663716.1:ENST00000663572.1:ENST00000676148.1:ENST00000667962.1:ENST00000674877.1:ENST00000675316.1:ENST00000674656.1:ENST00000446592.7:ENST00000667341.1:ENST00000675186.1:ENST00000652971.1:ENST00000661447.1:ENST00000674863.1:ENST00000675498.1:ENST00000675527.1:ENST00000676108.1:ENST00000657647.1:ENST00000675589.1:ENST00000675913.1:ENST00000675109.1:ENST00000671632.1:ENST00000671311.1:ENST00000676099.1:ENST00000660652.1:ENST00000675522.1:ENST00000675183.1:ENST00000658861.1:ENST00000663991.1:ENST00000675044.1:ENST00000675435.1:ENST00000674639.1:ENST00000676069.1:ENST00000675532.1:ENST00000674762.1:ENST00000523151.6:ENST00000675948.1:ENST00000665364.1:ENST00000657251.1:ENST00000675166.1:ENST00000674883.1:ENST00000675867.1:ENST00000674580.1:ENST00000675393.1:ENST00000520048.1:ENST00000674906.1:ENST00000676030.1:ENST00000670588.1:ENST00000675072.1:ENST00000664936.1:ENST00000652914.1:ENST00000657069.1	lncRNA	lncRNA	lncRNA	lncRNA	11	147	2	1.55359	2.19733	2.84107	0.0232386	6.40806e-4	0.118148	0.0228915
chr6	161005144	161005244	3024624	0	+	0.53	(0.515,0.57]	chr6	282304	127	INTRON	INTRON	MAP3K4	ENSG00000085511.20	ENST00000366919.6:ENST00000392142.9:ENST00000542952.5:ENST00000366920.6:ENST00000348824.11:ENST00000544041.5:ENST00000490904.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	64	2	1.81744	2.197285	2.57713	0.031028	0.00176427	0.143457	0.0376652
chr16	24783451	24783550	6329757	0	+	0.333333	(0.32,0.35]	chr16	605958	46	INTRON	INTRON	TNRC6A	ENSG00000090905.19	ENST00000395799.8:ENST00000315183.11:ENST00000491718.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	83	2	1.8903	2.197205	2.50411	0.0298043	0.00267989	0.129138	0.0478767
chr4	63447	63546	1905391	0	+	0.212121	[0,0.28]	chr4	191003	29	INTRON	INTRON	ZNF595	ENSG00000272602.6	ENST00000608255.2:ENST00000609518.5:ENST00000509152.3:ENST00000610261.6	protein_coding	protein_coding	protein_coding	protein_coding	14	235	2	2.09455	2.197195	2.29984	0.00479282	0.00111841	0.0602209	0.0307147
chr6	132795989	132796087	3222803	0	-	0.5	(0.476,0.515]	chr6	299650	48	INTRON	INTRON	SLC18B1	ENSG00000146409.12	ENST00000275227.9:ENST00000647932.1:ENST00000650278.1:ENST00000650136.1:ENST00000650298.1:ENST00000367918.1:ENST00000460518.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	93	2	1.97402	2.197185	2.42035	0.0206778	8.0704e-4	0.110999	0.0258804
chr1	29094262	29094361	60783	0	+	0.414141	(0.408,0.44]	chr1	7763	98	INTRON	INTRON	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000373798.5:ENST00000649674.1:ENST00000343067.9:ENST00000349460.9:ENST00000646871.1:ENST00000488277.1:ENST00000490308.2:ENST00000650132.1:ENST00000649992.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	82	2	2.00629	2.197155	2.38802	0.0189661	0.00178825	0.108861	0.0392749
chr14	102639208	102639308	5822999	0	+	0.29	(0.28,0.32]	chr14	552490	455	INTRON	INTRON	RCOR1	ENSG00000089902.10	ENST00000262241.7	protein_coding	protein_coding	protein_coding	protein_coding	4	55	2	1.71442	2.197085	2.67975	0.0454351	0.0252505	0.164236	0.12011
chr7	32508072	32508171	3303359	0	+	0.30303	(0.28,0.32]	chr7	306758	119	INTRON	INTRON	AVL9	ENSG00000105778.20	ENST00000485228.1:ENST00000318709.9:ENST00000459629.1:ENST00000409301.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	55	2	1.71442	2.197085	2.67975	0.0454351	0.0252505	0.164236	0.12011
chr7	152387856	152387956	3680812	0	-	0.29	(0.28,0.32]	chr7	341660	288	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000682301.1:ENST00000452749.2:ENST00000680867.1:ENST00000683800.1:ENST00000684278.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	55	2	1.71442	2.197085	2.67975	0.0454351	0.0252505	0.164236	0.12011
chr16	90138292	90138391	6424258	0	+	0.343434	(0.32,0.35]	chr16	617209	4	INTRON	INTRON	FAM157C	ENSG00000260528.6	ENST00000568070.1	lncRNA	lncRNA	lncRNA	lncRNA	9	116	2	1.68445	2.19706	2.70967	0.0198208	0.00105927	0.109608	0.0299929
chr10	68763689	68763789	4442713	0	+	0.51	(0.476,0.515]	chr10	409684	21	INTRON	INTRON	CCAR1	ENSG00000060339.14	ENST00000630771.2:ENST00000543719.5:ENST00000541012.5:ENST00000265872.11:ENST00000539539.5:ENST00000543229.5:ENST00000536012.5:ENST00000543225.5:ENST00000540210.5:ENST00000479143.2:ENST00000543706.1:ENST00000539250.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	59	2	1.58335	2.197055	2.81076	0.0640461	0.00203568	0.177882	0.0417667
chr3	25742043	25742143	1642422	0	-	0.28	[0,0.28]	chr3	168658	12	INTRON	INTRON	NGLY1	ENSG00000151092.18	ENST00000280700.10:ENST00000428257.5:ENST00000675217.1:ENST00000676225.1:ENST00000493324.5:ENST00000396649.7:ENST00000675178.1:ENST00000675680.1:ENST00000308710.9:ENST00000280699.13:ENST00000674841.1:ENST00000675234.1:ENST00000463611.2:ENST00000417874.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	52	2	2.00649	2.19703	2.38757	0.0552962	0.040391	0.165463	0.161534
chr11	31492922	31493022	4939074	0	-	0.39	(0.378,0.408]	chr11	462601	43	INTRON	INTRON	IMMP1L	ENSG00000148950.11	ENST00000532287.6:ENST00000534812.5:ENST00000526776.5:ENST00000278200.5:ENST00000648582.1:ENST00000533642.1:ENST00000527184.5:ENST00000528161.5:ENST00000532624.5:ENST00000529749.5:ENST00000530023.5:ENST00000531693.1:ENST00000532668.1:ENST00000533921.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	84	2	2.13797	2.1969849999999997	2.256	0.0124882	0.00336115	0.0923444	0.0532154
chr20	33683408	33683508	7329168	0	-	0.39	(0.378,0.408]	chr20	746456	26	INTRON	INTRON	E2F1	ENSG00000101412.13	ENST00000343380.6	protein_coding	protein_coding	protein_coding	protein_coding	4	52	2	2.04292	2.196975	2.35103	0.0326035	0.014158	0.145164	0.0959618
chr20	17949503	17949603	7320362	0	-	0.41	(0.408,0.44]	chr20	745284	4	SS3_PROX	SS3_PROX:INTRON	SNX5	ENSG00000089006.17	ENST00000377768.7:ENST00000490175.5:ENST00000483485.5:ENST00000377759.9:ENST00000476648.5:ENST00000463050.5:ENST00000431277.5:ENST00000419004.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	49	2	2.00228	2.19695	2.39162	0.0389732	0.0105837	0.143072	0.0911864
chr1	23022628	23022728	43789	0	+	0.44	(0.408,0.44]	chr1	5252	23	INTRON	INTRON	KDM1A	ENSG00000004487.18	ENST00000692214.1:ENST00000686934.1:ENST00000689853.1:ENST00000465864.2:ENST00000691256.1:ENST00000688122.1:ENST00000692056.1:ENST00000692853.1:ENST00000689366.1:ENST00000686270.1:ENST00000685102.1:ENST00000690627.1:ENST00000686771.1:ENST00000692209.1:ENST00000686339.1:ENST00000691813.1:ENST00000693156.1:ENST00000688235.1:ENST00000692975.1:ENST00000687202.1:ENST00000691682.1:ENST00000691404.1:ENST00000691694.1:ENST00000688680.1:ENST00000356634.7:ENST00000400181.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	17	186	2	2.18727	2.196935	2.2066	0.00198985	3.46504e-4	0.0405223	0.0165762
chr5	134858858	134858955	2491416	0	+	0.185567	[0,0.28]	chr5	238032	16	UTR3	UTR3:EXON_MRNA	C5orf24	ENSG00000181904.9	ENST00000338051.4:ENST00000394976.4:ENST00000504727.1	protein_coding	protein_coding	protein_coding	protein_coding	3	52	2	1.8986	2.196935	2.49527	0.0531512	0.0436497	0.179787	0.14882
chr7	129046492	129046592	3636497	0	-	0.31	(0.28,0.32]	chr7	338148	44	INTRON	INTRON	TNPO3	ENSG00000064419.14	ENST00000627585.2:ENST00000265388.10:ENST00000471234.5:ENST00000482320.5:ENST00000471166.1	protein_coding	protein_coding	protein_coding	protein_coding	4	62	2	2.00989	2.1969000000000003	2.38391	0.0427801	0.0122525	0.148082	0.0969406
chr2	110660956	110661045	1206688	0	-	0.303371	(0.28,0.32]	chr2	128689	2	EXON_MRNA	EXON_MRNA:INTRON	BUB1	ENSG00000169679.15	ENST00000302759.11:ENST00000535254.6:ENST00000409311.5:ENST00000466333.5:ENST00000666956.1:ENST00000465029.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	14	169	2	1.55688	2.196895	2.83691	0.0117024	0.00108506	0.0962115	0.0303448
chr7	100317621	100317721	3586584	0	-	0.41	(0.408,0.44]	chr7	334330	165	INTRON	INTRON	PMS2P1	ENSG00000078319.11	ENST00000685724.1:ENST00000692351.1:ENST00000685541.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	4	49	2	2.05947	2.19689	2.33431	0.0333232	0.0129219	0.134145	0.0990564
chr7	131385327	131385427	3417018	0	+	0.31	(0.28,0.32]	chr7	319193	95	INTRON	INTRON	MKLN1	ENSG00000128585.18	ENST00000421797.6:ENST00000416992.6:ENST00000429546.5:ENST00000446815.5:ENST00000494286.5:ENST00000352689.11:ENST00000494785.5:ENST00000458153.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	67	2	2.00031	2.19689	2.39347	0.0504457	0.0110488	0.156383	0.0928193
chr6	17691711	17691811	3066062	0	-	0.43	(0.408,0.44]	chr6	284872	27	INTRON	INTRON	NUP153	ENSG00000124789.12	ENST00000613258.4:ENST00000537253.5:ENST00000262077.3	protein_coding	protein_coding	protein_coding	protein_coding	7	82	2	1.96973	2.196885	2.42404	0.0108773	0.00413548	0.0923273	0.0566868
chr16	89562707	89562795	6420900	0	+	0.443182	(0.44,0.476]	chr16	616321	4	EXON_MRNA	EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPL13	ENSG00000167526.14	ENST00000563749.1:ENST00000484610.5:ENST00000567815.5:ENST00000563270.5:ENST00000311528.10:ENST00000562879.5:ENST00000452368.7:ENST00000393099.3:ENST00000399461.8:ENST00000570149.1:ENST00000472354.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	19	205	2	1.87066	2.196875	2.52309	0.00217834	2.58607e-4	0.0417893	0.014326
chr12	115977928	115978027	5422519	0	-	0.474747	(0.44,0.476]	chr12	518165	18	INTRON	INTRON	MED13L	ENSG00000123066.9	ENST00000281928.9:ENST00000648379.1:ENST00000650226.1:ENST00000649607.1:ENST00000648737.1:ENST00000649775.1:ENST00000648825.1:ENST00000648916.1:ENST00000548694.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	50	2	1.65297	2.1968	2.74063	0.0331814	0.0176095	0.145918	0.105143
chr7	158757302	158757401	3689080	0	-	0.454545	(0.44,0.476]	chr7	342353	41	INTRON	INTRON	ESYT2	ENSG00000117868.18	ENST00000251527.10:ENST00000275418.13:ENST00000652148.1	protein_coding	protein_coding	protein_coding	protein_coding	5	50	2	1.65297	2.1968	2.74063	0.0331814	0.0176095	0.145918	0.105143
chr2	85545186	85545281	821629	0	+	0.326316	(0.32,0.35]	chr2	91572	16	UTR3	UTR3:EXON_MRNA	MAT2A	ENSG00000168906.13	ENST00000306434.8	protein_coding	protein_coding	protein_coding	protein_coding	17	229	2	2.01106	2.19679	2.38252	0.00182983	6.25335e-4	0.0396801	0.0229834
chr7	72951078	72951173	3553766	0	-	0.526316	(0.515,0.57]	chr7	330613	5	INTRON	INTRON	NSUN5P2	ENSG00000106133.18	ENST00000602348.5:ENST00000444583.6:ENST00000388955.8:ENST00000485741.6:ENST00000457352.4	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	7	69	2	1.98329	2.196755	2.41022	0.0105419	0.00332441	0.0860389	0.0528673
chr1	23063815	23063914	44213	0	+	0.393939	(0.378,0.408]	chr1	5295	43	INTRON	INTRON	KDM1A	ENSG00000004487.18	ENST00000692214.1:ENST00000686934.1:ENST00000689853.1:ENST00000465864.2:ENST00000691256.1:ENST00000688122.1:ENST00000692056.1:ENST00000692853.1:ENST00000689366.1:ENST00000686270.1:ENST00000685102.1:ENST00000690627.1:ENST00000686771.1:ENST00000692209.1:ENST00000686339.1:ENST00000691813.1:ENST00000693156.1:ENST00000688235.1:ENST00000692975.1:ENST00000687202.1:ENST00000691682.1:ENST00000691404.1:ENST00000691694.1:ENST00000688680.1:ENST00000356634.7:ENST00000400181.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	86	2	1.38218	2.19672	3.01126	0.0444424	0.00115997	0.162728	0.0311664
chr12	120197726	120197808	5433274	0	-	0.390244	(0.378,0.408]	chr12	519350	4	UTR5	UTR5:EXON_MRNA:SS3_PROX:INTRON	RPLP0	ENSG00000089157.16	ENST00000392514.9:ENST00000551150.5:ENST00000546989.5:ENST00000313104.9:ENST00000552292.5:ENST00000228306.8:ENST00000552461.5:ENST00000549098.5:ENST00000551258.5:ENST00000546990.5:ENST00000547211.5:ENST00000547475.5:ENST00000547173.5:ENST00000550856.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	76	2	1.99678	2.19671	2.39664	0.0177959	0.00480522	0.113452	0.0602209
chr19	58391077	58391176	7107619	0	+	0.40404	(0.378,0.408]	chr19	713447	22	INTRON	INTRON	RPS5	ENSG00000083845.9	ENST00000601521.5:ENST00000596314.5:ENST00000598098.5:ENST00000196551.8:ENST00000598495.5:ENST00000598807.1:ENST00000596046.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	76	2	1.99678	2.19671	2.39664	0.0177959	0.00480522	0.113452	0.0602209
chr2	74200981	74201081	813250	0	+	0.44	(0.408,0.44]	chr2	90921	2	SS3_PROX	SS3_PROX:INTRON	MTHFD2	ENSG00000065911.13	ENST00000677997.1:ENST00000677170.1:ENST00000678684.1:ENST00000409804.5:ENST00000489041.2:ENST00000470592.5:ENST00000678955.1:ENST00000394053.7:ENST00000677377.1:ENST00000679055.1:ENST00000678340.1:ENST00000477455.5:ENST00000409601.1:ENST00000678228.1:ENST00000488086.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	71	2	1.96534	2.19671	2.42808	0.0216499	0.00331055	0.11491	0.0527031
chr12	50017915	50018015	5322603	0	-	0.53	(0.515,0.57]	chr12	507401	8	INTRON	INTRON	RACGAP1	ENSG00000161800.13	ENST00000312377.10:ENST00000427314.6:ENST00000454520.6:ENST00000547905.5:ENST00000548320.5:ENST00000548598.5:ENST00000552310.5:ENST00000550149.5:ENST00000546786.5:ENST00000546595.5:ENST00000551145.5:ENST00000548824.5:ENST00000548644.5:ENST00000551260.5:ENST00000546723.5:ENST00000552921.5:ENST00000548247.1:ENST00000552157.5:ENST00000546764.5:ENST00000549777.5:ENST00000550651.5:ENST00000552004.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	63	2	1.63184	2.196665	2.7614899999999998	0.0545832	6.09302e-4	0.165292	0.0223951
chr7	105062950	105063050	3375114	0	+	0.25	[0,0.28]	chr7	315884	2	SS3_PROX	SS3_PROX:INTRON	KMT2E	ENSG00000005483.22	ENST00000622386.2:ENST00000257745.9:ENST00000334884.9:ENST00000311117.8:ENST00000478990.5:ENST00000495267.5:ENST00000476671.5:ENST00000667857.1:ENST00000474203.5:ENST00000482560.6:ENST00000485619.1:ENST00000468607.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	156	2	1.50406	2.1966	2.88914	0.0516061	2.68889e-4	0.159058	0.0145349
chr3	47776124	47776223	1685020	0	-	0.353535	(0.35,0.378]	chr3	172122	28	INTRON	INTRON	SMARCC1	ENSG00000173473.11	ENST00000254480.10:ENST00000425518.5:ENST00000454240.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	99	2	1.50939	2.196585	2.88378	0.0423993	4.08693e-4	0.148082	0.0181306
chr6	17668374	17668474	3065820	0	-	0.35	(0.32,0.35]	chr6	284840	26	INTRON	INTRON	NUP153	ENSG00000124789.12	ENST00000613258.4:ENST00000537253.5:ENST00000262077.3	protein_coding	protein_coding	protein_coding	protein_coding	4	51	2	1.88255	2.19658	2.51061	0.0364463	0.0269187	0.138959	0.135288
chr7	23453283	23453383	3503495	0	-	0.34	(0.32,0.35]	chr7	326910	221	INTRON	INTRON	IGF2BP3	ENSG00000136231.14	ENST00000258729.8:ENST00000421467.6:ENST00000468263.5:ENST00000491719.5:ENST00000476938.5:ENST00000468005.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	51	2	1.88255	2.19658	2.51061	0.0364463	0.0269187	0.138959	0.135288
chr6	7166568	7166668	2798953	0	+	0.46	(0.44,0.476]	chr6	263733	254	INTRON	INTRON	RREB1	ENSG00000124782.21	ENST00000379933.7:ENST00000491191.5:ENST00000471433.5:ENST00000379938.7:ENST00000467782.5:ENST00000349384.10:ENST00000334984.10:ENST00000475946.5:ENST00000483150.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	67	2	2.00793	2.19656	2.38519	0.012193	0.00937685	0.0910127	0.0859966
chr1	65375428	65375527	136756	0	+	0.535354	(0.515,0.57]	chr1	15376	89	INTRON	INTRON	DNAJC6	ENSG00000116675.16	ENST00000494710.6:ENST00000263441.11:ENST00000395325.7:ENST00000371069.5:ENST00000472787.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	111	2	1.60826	2.196535	2.78481	0.0118853	2.42617e-4	0.0962115	0.0143397
chr10	74017477	74017577	4454695	0	+	0.36	(0.35,0.378]	chr10	411391	2	INTRON	INTRON	VCL	ENSG00000035403.18	ENST00000623461.3:ENST00000372755.7:ENST00000624354.3:ENST00000211998.10:ENST00000478896.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	74	2	1.71411	2.196425	2.67874	0.0310697	0.00373022	0.13151	0.0561984
chr20	35732614	35732710	7336455	0	-	0.364583	(0.35,0.378]	chr20	747475	6	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	RBM39	ENSG00000131051.24	ENST00000253363.11:ENST00000639702.1:ENST00000656873.1:ENST00000463004.5:ENST00000361162.10:ENST00000461283.5:ENST00000403542.6:ENST00000338163.10:ENST00000528062.7:ENST00000429968.5:ENST00000444878.5:ENST00000665058.1:ENST00000492779.5:ENST00000374038.7:ENST00000412738.5:ENST00000434927.5:ENST00000425184.5:ENST00000481037.5:ENST00000455343.5:ENST00000416108.5:ENST00000426951.5:ENST00000477334.1:ENST00000442447.5:ENST00000449489.5:ENST00000433027.5:ENST00000487604.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	16	181	2	2.09085	2.1964	2.30195	0.00377584	5.82134e-4	0.0540736	0.0219289
chr1	26846307	26846407	52410	0	+	0.39	(0.378,0.408]	chr1	6697	133	INTRON	INTRON	ZDHHC18	ENSG00000204160.12	ENST00000374142.9:ENST00000374141.6:ENST00000534643.5	protein_coding	protein_coding	protein_coding	protein_coding	3	38	2	1.76032	2.196395	2.63247	0.0721577	0.0215745	0.187433	0.123836
chr5	149513509	149513609	2750694	0	-	0.39	(0.378,0.408]	chr5	259042	3	SS3_PROX	SS3_PROX:INTRON	CSNK1A1	ENSG00000113712.19	ENST00000261798.10:ENST00000377843.8:ENST00000657001.1:ENST00000515768.6:ENST00000606719.6:ENST00000657462.1:ENST00000661952.1:ENST00000504676.5:ENST00000515435.5:ENST00000662268.1:ENST00000657706.1:ENST00000606299.2:ENST00000670598.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	38	2	1.76032	2.196395	2.63247	0.0721577	0.0215745	0.187433	0.123836
chr2	175091842	175091942	1271558	0	-	0.25	[0,0.28]	chr2	134392	107	INTRON	INTRON	ATF2	ENSG00000115966.18	ENST00000345739.9:ENST00000426833.7:ENST00000264110.7:ENST00000409437.5:ENST00000409635.5:ENST00000435004.6:ENST00000428760.5:ENST00000392544.5:ENST00000417080.5:ENST00000456655.5:ENST00000421438.5:ENST00000429579.5:ENST00000415955.5:ENST00000409499.5:ENST00000478905.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	192	2	2.10011	2.19629	2.29247	0.00608041	0.00217394	0.0676501	0.043502
chr10	22646472	22646572	4579818	0	-	0.39	(0.378,0.408]	chr10	422027	2	SS3_PROX	SS3_PROX:INTRON	PIP4K2A	ENSG00000150867.14	ENST00000376573.9:ENST00000545335.5:ENST00000605011.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	130	2	2.02407	2.196175	2.36828	0.00680892	6.41373e-4	0.0711884	0.0228924
chr1	32661745	32661845	65936	0	+	0.32	(0.28,0.32]	chr1	8423	1	SS3_PROX	SS3_PROX:INTRON	RBBP4	ENSG00000162521.19	ENST00000414241.7:ENST00000527118.5:ENST00000373493.10:ENST00000401893.7:ENST00000524393.5:ENST00000492348.6:ENST00000526193.5:ENST00000373485.5:ENST00000477563.6:ENST00000458695.6:ENST00000445722.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	62	2	2.05458	2.196145	2.33771	0.0381508	0.0142701	0.141764	0.103838
chr16	84772040	84772140	6410645	0	+	0.46	(0.44,0.476]	chr16	615341	1	SS3_PROX	SS3_PROX:INTRON	USP10	ENSG00000103194.16	ENST00000540269.6:ENST00000219473.12:ENST00000570191.5:ENST00000563048.5:ENST00000569925.1:ENST00000567526.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	36	2	1.93084	2.1960949999999997	2.46135	0.0443175	0.0374637	0.162302	0.140008
chr7	105364753	105364853	3603664	0	-	0.46	(0.44,0.476]	chr7	336161	578	INTRON	INTRON	SRPK2	ENSG00000135250.17	ENST00000393651.8:ENST00000482897.5:ENST00000460391.5:ENST00000462282.5:ENST00000465112.5:ENST00000482862.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	36	2	1.93084	2.1960949999999997	2.46135	0.0443175	0.0374637	0.162302	0.140008
chr10	32378569	32378645	4591966	0	-	0.355263	(0.35,0.378]	chr10	423400	2	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	EPC1	ENSG00000120616.16	ENST00000375110.6:ENST00000479380.2:ENST00000462470.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	40	2	2.1617	2.196065	2.23043	0.0771502	0.0187487	0.196285	0.117523
chr5	57229351	57229450	2358611	0	+	0.373737	(0.35,0.378]	chr5	227575	76	INTRON	INTRON	GPBP1	ENSG00000062194.16	ENST00000424459.7:ENST00000514387.6:ENST00000506184.7:ENST00000511209.5:ENST00000264779.6	protein_coding	protein_coding	protein_coding	protein_coding	3	40	2	2.1617	2.196065	2.23043	0.0771502	0.0187487	0.196285	0.117523
chrX	45036074	45036172	7650239	0	+	0.357143	(0.35,0.378]	chrX	782764	7	INTRON	INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000675440.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000621147.5:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1:ENST00000675525.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	40	2	2.1617	2.196065	2.23043	0.0771502	0.0187487	0.196285	0.117523
chr8	30701711	30701809	3932478	0	-	0.5	(0.476,0.515]	chr8	360232	12	INTRON	INTRON	GSR	ENSG00000104687.14	ENST00000221130.11:ENST00000643653.1:ENST00000643525.1:ENST00000537535.5:ENST00000541648.5:ENST00000546342.5:ENST00000523295.5:ENST00000521479.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	70	2	2.05714	2.19587	2.3346	0.0156961	0.00494807	0.101453	0.0646039
chr6	36979744	36979841	3089751	0	-	0.515464	(0.515,0.57]	chr6	289060	9	EXON_MRNA	EXON_MRNA:INTRON	MTCH1	ENSG00000137409.21	ENST00000695055.1:ENST00000695048.1:ENST00000695049.1:ENST00000695050.1:ENST00000695051.1:ENST00000695052.1:ENST00000695053.1:ENST00000695054.1:ENST00000695046.1:ENST00000695047.1:ENST00000695045.1:ENST00000695044.1:ENST00000373616.9:ENST00000373627.10:ENST00000695059.1:ENST00000695060.1:ENST00000695058.1:ENST00000695066.1:ENST00000695067.1:ENST00000695068.1:ENST00000695069.1:ENST00000695063.1:ENST00000695064.1:ENST00000695065.1:ENST00000695062.1:ENST00000695072.1:ENST00000695070.1:ENST00000695071.1:ENST00000695073.1:ENST00000695074.1:ENST00000695075.1:ENST00000695076.1:ENST00000460219.3:ENST00000695077.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	50	2	2.06206	2.195865	2.32967	0.0135396	0.0133671	0.101363	0.0946278
chr16	68299625	68299725	6372236	0	+	0.38	(0.378,0.408]	chr16	612394	24	UTR3	UTR3:EXON_MRNA	SLC7A6	ENSG00000103064.15	ENST00000618043.4:ENST00000648130.1:ENST00000219343.11:ENST00000379152.7:ENST00000566454.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	61	2	2.16303	2.19581	2.22859	0.0252473	0.00763308	0.12011	0.0777238
chr5	54305391	54305490	2620867	0	-	0.40404	(0.378,0.408]	chr5	248862	192	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2:ENST00000505630.5:ENST00000505383.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	14	158	2	2.06826	2.195785	2.32331	0.00189565	0.00114569	0.0393001	0.0311779
chr22	19453771	19453869	7554633	0	-	0.530612	(0.515,0.57]	chr22	772345	32	EXON_MRNA	EXON_MRNA:INTRON	UFD1	ENSG00000070010.19	ENST00000263202.15:ENST00000399523.5:ENST00000459854.5:ENST00000466373.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	17	139	2	1.40227	2.195755	2.98924	0.0137912	7.45477e-5	0.10247	0.0077367
chr16	22331523	22331612	6321897	0	+	0.325843	(0.32,0.35]	chr16	605285	2	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	POLR3E	ENSG00000058600.16	ENST00000615879.4:ENST00000299853.10:ENST00000564209.5:ENST00000418581.6:ENST00000359210.8:ENST00000564750.5:ENST00000563282.1:ENST00000565117.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	135	2	1.84461	2.19575	2.54689	0.0150305	5.04008e-4	0.0994339	0.0202328
chrX	139927517	139927617	7905850	0	-	0.49	(0.476,0.515]	chrX	804457	954	INTRON	INTRON	ATP11C	ENSG00000101974.15	ENST00000370557.5:ENST00000682941.1:ENST00000485626.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	38	2	2.10874	2.19569	2.28264	0.0534132	0.0285608	0.179876	0.12666
chr2	53873143	53873242	1119545	0	-	0.606061	(0.57,1]	chr2	119865	23	INTRON	INTRON	PSME4	ENSG00000068878.15	ENST00000404125.6:ENST00000389993.7:ENST00000476586.5:ENST00000466539.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	19	109	2	1.81783	2.19568	2.57353	0.00247664	2.10231e-5	0.0446195	0.00354885
chr2	197492625	197492724	1307095	0	-	0.434343	(0.408,0.44]	chr2	136785	12	INTRON	INTRON	HSPD1	ENSG00000144381.18	ENST00000388968.8:ENST00000426480.2:ENST00000345042.6:ENST00000452200.6:ENST00000679291.1:ENST00000677403.1:ENST00000678621.1:ENST00000678545.1:ENST00000676933.1:ENST00000678170.1:ENST00000476746.6:ENST00000678969.1:ENST00000428204.6:ENST00000418022.2:ENST00000439605.2:ENST00000440114.2:ENST00000461097.2:ENST00000677792.1:ENST00000678761.1:ENST00000677913.1:ENST00000677454.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	105	2	2.12957	2.1955850000000003	2.2616	0.00421806	0.00321416	0.0572185	0.0523065
chr17	20901518	20901617	6576397	0	+	0.444444	(0.44,0.476]	chr17	639388	25	INTRON	INTRON	CCDC144NL-AS1	ENSG00000233098.10	ENST00000577537.5:ENST00000692759.1:ENST00000443508.8:ENST00000692309.1:ENST00000439794.6:ENST00000417232.6:ENST00000583962.2:ENST00000577860.5	lncRNA	lncRNA	lncRNA	lncRNA	11	113	2	1.48122	2.195565	2.90991	0.0238302	3.20441e-4	0.118976	0.0159645
chr6	159739836	159739933	3022515	0	+	0.237113	[0,0.28]	chr6	281903	4	INTRON	INTRON	WTAP	ENSG00000146457.16	ENST00000358372.8:ENST00000650096.1:ENST00000614346.4:ENST00000621533.5:ENST00000631126.2:ENST00000337387.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	110	2	1.27342	2.19556	3.1177	0.0460324	0.00849154	0.165381	0.0778788
chr9	37186011	37186111	4118315	0	+	0.41	(0.408,0.44]	chr9	375384	259	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000322831.6:ENST00000461038.5:ENST00000488607.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	50	2	1.55035	2.19556	2.84077	0.0455214	0.0132196	0.164236	0.0940535
chr9	72171452	72171552	4141486	0	+	0.32	(0.28,0.32]	chr9	377412	214	INTRON	INTRON	GDA	ENSG00000119125.17	ENST00000545168.5:ENST00000238018.8:ENST00000358399.8:ENST00000376986.5:ENST00000475764.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	48	2	2.00989	2.19545	2.38101	0.0456017	0.0427801	0.164236	0.148082
chr1	212041500	212041599	307396	0	+	0.707071	(0.57,1]	chr1	35458	52	INTRON	INTRON	DTL	ENSG00000143476.18	ENST00000542077.5:ENST00000366991.5:ENST00000475419.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	52	2	1.99867	2.19544	2.39221	0.00352602	0.00337964	0.0546236	0.0517124
chr7	111278094	111278194	3621263	0	-	0.42	(0.408,0.44]	chr7	337093	3142	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	50	2	1.43792	2.19544	2.95296	0.062843	0.00929354	0.196433	0.0817766
chr3	196074533	196074595	1897479	0	-	0.354839	(0.35,0.378]	chr3	189977	1	SS3_PROX	SS3_PROX:INTRON	TFRC	ENSG00000072274.13	ENST00000420415.5:ENST00000360110.9:ENST00000392396.7:ENST00000421258.1:ENST00000464011.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	13	164	2	1.59887	2.195335	2.7918	0.0202563	6.00241e-5	0.110054	0.00638274
chr19	16133088	16133183	7026475	0	+	0.505263	(0.476,0.515]	chr19	699272	9	UTR3	UTR3:EXON_MRNA	RAB8A	ENSG00000167461.12	ENST00000300935.8	protein_coding	protein_coding	protein_coding	protein_coding	4	44	2	1.58335	2.19532	2.80729	0.0640461	0.0126008	0.177882	0.0980703
chr5	154807482	154807577	2527547	0	+	0.284211	(0.28,0.32]	chr5	241693	11	INTRON	INTRON	LARP1	ENSG00000155506.19	ENST00000687700.1:ENST00000336314.9:ENST00000690816.1:ENST00000518297.6:ENST00000685946.1:ENST00000685355.1:ENST00000688232.1:ENST00000519194.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	55	2	1.76378	2.19532	2.62686	0.0395495	0.0289217	0.161534	0.1274
chr7	139420288	139420386	3438208	0	+	0.510204	(0.476,0.515]	chr7	320382	22	INTRON	INTRON	LUC7L2:FMC1-LUC7L2	ENSG00000146963.18:ENSG00000269955.2	ENST00000541170.7:ENST00000541515.3:ENST00000619796.4:ENST00000354926.9:ENST00000456182.5:ENST00000263545.7:ENST00000498518.1:ENST00000482860.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	15	163	2	1.51111	2.19524	2.87937	0.013526	9.30291e-5	0.101363	0.00857086
chr18	9106774	9106874	6868634	0	+	0.47	(0.44,0.476]	chr18	680510	14	INTRON	INTRON	NDUFV2	ENSG00000178127.13	ENST00000577703.1:ENST00000318388.11:ENST00000583375.5:ENST00000400033.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	22	232	2	2.09028	2.1952	2.30012	8.53051e-4	3.12766e-4	0.0267428	0.0159026
chr7	139107824	139107924	3656402	0	-	0.42	(0.408,0.44]	chr7	339450	177	INTRON	INTRON	ZC3HAV1	ENSG00000105939.14	ENST00000242351.10:ENST00000464606.5:ENST00000680309.1:ENST00000471652.1	protein_coding	protein_coding	protein_coding	protein_coding	5	59	2	2.16746	2.1950700000000003	2.22268	0.024436	0.00770925	0.12011	0.0784002
chr5	54079575	54079674	2618602	0	-	0.30303	(0.28,0.32]	chr5	248841	36	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	162	2	2.08448	2.19501	2.30554	0.00501623	0.00189266	0.0618792	0.0402736
chr1	65376916	65377015	136771	0	+	0.494949	(0.476,0.515]	chr1	15376	104	INTRON	INTRON	DNAJC6	ENSG00000116675.16	ENST00000494710.6:ENST00000263441.11:ENST00000395325.7:ENST00000371069.5:ENST00000472787.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	74	2	1.65426	2.19495	2.73564	0.0231344	0.00333144	0.126939	0.0512081
chr1	205096004	205096092	622160	0	-	0.522727	(0.515,0.57]	chr1	73964	6	INTRON	INTRON	RBBP5	ENSG00000117222.14	ENST00000367164.1:ENST00000264515.11	protein_coding	protein_coding	protein_coding	protein_coding	3	32	2	2.12971	2.194915	2.26012	0.0757903	0.0160033	0.194427	0.109464
chr20	47356192	47356279	7349514	0	-	0.517241	(0.515,0.57]	chr20	749371	3	SS5_PROX	SS5_PROX:INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000458360.6:ENST00000262975.8:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000435836.5	protein_coding	protein_coding	protein_coding	protein_coding	3	32	2	2.12971	2.194915	2.26012	0.0757903	0.0160033	0.194427	0.109464
chr4	56350258	56350358	2150833	0	-	0.54	(0.515,0.57]	chr4	211679	2	SS3_PROX	SS3_PROX:INTRON	AASDH	ENSG00000157426.14	ENST00000451613.5:ENST00000602986.5:ENST00000205214.11:ENST00000513376.5:ENST00000514745.5:ENST00000503808.5:ENST00000502617.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	32	2	2.12971	2.194915	2.26012	0.0757903	0.0160033	0.194427	0.109464
chr6	47479144	47479244	2873576	0	+	0.41	(0.408,0.44]	chr6	272723	5	INTRON	INTRON	CD2AP	ENSG00000198087.7	ENST00000359314.5	protein_coding	protein_coding	protein_coding	protein_coding	4	44	2	1.8749	2.19491	2.51492	0.0329839	0.0264246	0.133816	0.133676
chr12	108698168	108698267	5406442	0	-	0.444444	(0.44,0.476]	chr12	516015	19	INTRON	INTRON	CORO1C	ENSG00000110880.11	ENST00000261401.8:ENST00000420959.6:ENST00000541050.5:ENST00000549384.5:ENST00000550542.5:ENST00000549772.5:ENST00000552871.5:ENST00000547294.5:ENST00000550032.5:ENST00000551550.5:ENST00000546571.5:ENST00000551044.1:ENST00000547170.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	44	2	1.92837	2.19486	2.46135	0.0374637	0.0222222	0.140008	0.124303
chr6	34878213	34878307	3086230	0	-	0.404255	(0.378,0.408]	chr6	288702	9	UTR3	UTR3:EXON_MRNA	TAF11	ENSG00000064995.19	ENST00000361288.9:ENST00000650109.1:ENST00000693593.1:ENST00000420584.3:ENST00000689560.1:ENST00000685682.1:ENST00000691871.1:ENST00000686190.1:ENST00000687970.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	16	164	2	1.31738	2.194845	3.07231	0.0283164	4.3162e-5	0.126007	0.00532008
chr1	162590611	162590711	238615	0	+	0.33	(0.32,0.35]	chr1	28739	1	SS5_PROX	SS5_PROX:INTRON	UAP1	ENSG00000117143.14	ENST00000367925.6:ENST00000367926.9	protein_coding	protein_coding	protein_coding	protein_coding	5	69	2	1.8903	2.194795	2.49929	0.0298043	0.00776612	0.129138	0.0787356
chr3	108054145	108054244	1768914	0	-	0.464646	(0.44,0.476]	chr3	178921	23	EXON_MRNA	EXON_MRNA:INTRON	CD47	ENSG00000196776.17	ENST00000361309.6:ENST00000355354.13:ENST00000471694.1:ENST00000517766.5:ENST00000398258.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	59	2	2.08277	2.19475	2.30673	0.0309998	0.0055175	0.13151	0.0672816
chr9	77212468	77212568	4145273	0	+	0.44	(0.408,0.44]	chr9	377777	1	SS3_PROX	SS3_PROX:INTRON	VPS13A	ENSG00000197969.14	ENST00000376636.7:ENST00000360280.8:ENST00000643348.1:ENST00000645632.1	protein_coding	protein_coding	protein_coding	protein_coding	4	49	2	1.94273	2.194735	2.44674	0.0456237	0.00868283	0.149888	0.0842798
chr9	131404342	131404442	4217072	0	+	0.44	(0.408,0.44]	chr9	386720	97	INTRON	INTRON	PRRC2B	ENSG00000288701.1	ENST00000682525.1:ENST00000684596.1:ENST00000683519.1:ENST00000682501.1	protein_coding	protein_coding	protein_coding	protein_coding	4	49	2	1.94273	2.194735	2.44674	0.0456237	0.00868283	0.149888	0.0842798
chr12	123408285	123408382	5242826	0	+	0.556701	(0.515,0.57]	chr12	498222	7	UTR3	UTR3:EXON_MRNA	KMT5A	ENSG00000183955.14	ENST00000402868.8:ENST00000437519.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	50	2	2.00468	2.1947200000000002	2.38476	0.0166344	0.0110593	0.110511	0.0873897
chr19	57828703	57828802	7105813	0	+	0.515152	(0.476,0.515]	chr19	713201	78	INTRON	INTRON	ENSG00000268750:ZNF587B	ENSG00000268750.7:ENSG00000269343.9	ENST00000597134.5:ENST00000651253.2:ENST00000596498.2:ENST00000593873.6:ENST00000603271.1:ENST00000594328.1:ENST00000598031.1	protein_coding	protein_coding	protein_coding	protein_coding	8	90	2	1.77073	2.1947200000000002	2.61871	0.0151174	0.00174257	0.108513	0.0375363
chr2	200863335	200863423	1310103	0	-	0.454545	(0.44,0.476]	chr2	137052	2	INTRON	INTRON	CLK1	ENSG00000013441.17	ENST00000321356.9:ENST00000473565.5:ENST00000432425.5:ENST00000409403.6:ENST00000434813.3:ENST00000492793.1:ENST00000481641.1:ENST00000482590.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	13	125	2	1.50172	2.1947	2.88768	0.0139907	5.10179e-4	0.102514	0.020816
chr9	91875960	91876060	4284522	0	-	0.49	(0.476,0.515]	chr9	393909	998	INTRON	INTRON	ROR2	ENSG00000169071.15	ENST00000375715.5:ENST00000375708.4:ENST00000550066.5:ENST00000495386.5:ENST00000546883.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	93	2	1.51533	2.1946950000000003	2.87406	0.0184991	0.00188729	0.116738	0.0391691
chr11	66722524	66722623	4969699	0	-	0.424242	(0.408,0.44]	chr11	468905	6	INTRON	INTRON	SPTBN2	ENSG00000173898.15	ENST00000533211.6:ENST00000647510.2:ENST00000611817.5:ENST00000309996.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	59	2	1.78881	2.194645	2.60048	0.0370259	0.00484324	0.139194	0.0640618
chr1	225413433	225413529	645605	0	-	0.322917	(0.32,0.35]	chr1	76357	4	INTRON	INTRON	LBR	ENSG00000143815.15	ENST00000272163.9:ENST00000338179.6:ENST00000651341.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	81	2	2.09005	2.194595	2.29914	0.0330483	0.00307433	0.133816	0.0510029
chr1	23780341	23780441	44799	0	+	0.44	(0.408,0.44]	chr1	5453	4	SS5_PROX	SS5_PROX:INTRON	PITHD1	ENSG00000057757.10	ENST00000246151.9:ENST00000415372.1	protein_coding	protein_coding	protein_coding	protein_coding	4	49	2	2.11447	2.1945550000000003	2.27464	0.0285207	0.0158016	0.12666	0.109464
chr7	5416968	5417068	3472015	0	-	0.41	(0.408,0.44]	chr7	324678	97	INTRON	INTRON	TNRC18	ENSG00000182095.15	ENST00000399537.8:ENST00000430969.6:ENST00000399434.2	protein_coding	protein_coding	protein_coding	protein_coding	4	49	2	2.11447	2.1945550000000003	2.27464	0.0285207	0.0158016	0.12666	0.109464
chr17	32467227	32467325	6598577	0	+	0.510204	(0.476,0.515]	chr17	641992	23	INTRON	INTRON	PSMD11	ENSG00000108671.11	ENST00000649012.1:ENST00000457654.6:ENST00000578397.5:ENST00000261712.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	80	2	2.10798	2.19455	2.28112	0.00700958	0.00628634	0.0722266	0.0718189
chr7	148768348	148768448	3444397	0	+	0.4	(0.378,0.408]	chr7	321232	2	INTRON	INTRON	CUL1	ENSG00000055130.18	ENST00000409469.5:ENST00000662716.1:ENST00000665936.1:ENST00000663044.1:ENST00000602748.5:ENST00000663835.1:ENST00000655324.1:ENST00000662132.1:ENST00000325222.9:ENST00000656001.1:ENST00000666124.1:ENST00000671421.1:ENST00000671397.1:ENST00000662670.1:ENST00000660240.1:ENST00000660013.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	46	2	1.53052	2.1945300000000003	2.85854	0.0744544	0.0107837	0.192012	0.0920575
chr10	101784633	101784728	4680617	0	-	0.378947	(0.378,0.408]	chr10	431933	3	UTR3	UTR3:EXON_MRNA	OGA	ENSG00000198408.14	ENST00000439817.5:ENST00000361464.8	protein_coding	protein_coding	protein_coding	protein_coding	23	205	2	1.20741	2.1945200000000002	3.18163	0.0230469	4.51128e-5	0.12656800000000001	0.005802
chr6	68741806	68741905	2887384	0	+	0.262626	[0,0.28]	chr6	273730	1020	INTRON	INTRON	ADGRB3	ENSG00000135298.15	ENST00000370598.6:ENST00000684661.1:ENST00000546190.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	55	2	2.02265	2.19451	2.36637	0.0500615	0.0449017	0.17488	0.149888
chr1	29118089	29118187	61029	0	+	0.5	(0.476,0.515]	chr1	7792	14	UTR3	UTR3:EXON_MRNA	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000649717.1:ENST00000373798.5:ENST00000343067.9:ENST00000460378.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	17	187	2	1.94512	2.194445	2.44377	0.00171746	3.85728e-4	0.0382379	0.0182738
chr8	31061138	31061236	3728208	0	+	0.295918	(0.28,0.32]	chr8	346535	15	INTRON	INTRON	WRN	ENSG00000165392.11	ENST00000650667.1:ENST00000298139.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	63	2	1.56118	2.194435	2.82769	0.0467152	0.0169391	0.1676	0.103888
chr19	45672257	45672350	7080467	0	+	0.451613	(0.44,0.476]	chr19	708300	1	INTRON	INTRON	GIPR	ENSG00000010310.9	ENST00000590918.6:ENST00000652180.1:ENST00000263281.7:ENST00000585889.1:ENST00000304207.12	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	59	2	1.87325	2.194395	2.51554	0.0265709	0.00777207	0.134088	0.0757731
chr13	114284787	114284883	5550858	0	+	0.458333	(0.44,0.476]	chr13	530559	12	INTRON	INTRON	UPF3A	ENSG00000169062.15	ENST00000375299.8:ENST00000351487.5:ENST00000484246.5:ENST00000480362.5:ENST00000474056.5:ENST00000493727.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	77	2	1.7899	2.19439	2.59888	0.0158205	0.00487719	0.101453	0.0640618
chr3	177031952	177032051	1870753	0	-	0.252525	[0,0.28]	chr3	187282	43	INTRON	INTRON	TBL1XR1	ENSG00000177565.18	ENST00000636864.1:ENST00000457928.7:ENST00000430069.5:ENST00000637659.1:ENST00000673974.1:ENST00000631253.2:ENST00000352800.10:ENST00000422442.6:ENST00000626758.1:ENST00000636348.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	98	2	1.92964	2.19434	2.45904	0.0157154	0.0137145	0.109464	0.0949306
chr1	11941331	11941431	26051	0	+	0.52	(0.515,0.57]	chr1	2949	61	INTRON	INTRON	PLOD1	ENSG00000083444.17	ENST00000485046.5:ENST00000449038.5:ENST00000196061.5:ENST00000358133.5:ENST00000429000.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	77	2	1.77888	2.19433	2.60978	0.0139834	0.00151689	0.10247	0.0352794
chr6	10896929	10897026	2811842	0	+	0.402062	(0.378,0.408]	chr6	264556	24	INTRON	INTRON	SYCP2L	ENSG00000153157.13	ENST00000341041.8:ENST00000283141.11:ENST00000543878.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	51	2	2.17608	2.19423	2.21238	0.0218783	0.0218124	0.123836	0.11491
chr5	55329255	55329355	2355303	0	+	0.45	(0.44,0.476]	chr5	227150	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MTREX	ENSG00000039123.16	ENST00000230640.10:ENST00000506750.5:ENST00000503165.5:ENST00000504997.1:ENST00000505565.5:ENST00000502953.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	49	2	1.83899	2.194215	2.54944	0.0589734	0.00591346	0.167915	0.0694038
chr10	101810714	101810814	4680898	0	-	0.5	(0.476,0.515]	chr10	432011	4	SS3_PROX	SS3_PROX:INTRON	OGA	ENSG00000198408.14	ENST00000439817.5:ENST00000361464.8:ENST00000357797.9:ENST00000370094.7:ENST00000429860.1	protein_coding	protein_coding	protein_coding	protein_coding	6	67	2	2.07116	2.19421	2.31726	0.015077	0.00731321	0.0994339	0.076234
chr1	77594453	77594553	492575	0	-	0.34	(0.32,0.35]	chr1	58292	94	INTRON	INTRON	ZZZ3	ENSG00000036549.13	ENST00000370801.8:ENST00000481346.5:ENST00000476275.5:ENST00000370798.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	57	2	1.88909	2.19419	2.49929	0.0553737	0.00776612	0.165463	0.0787356
chr6	124975088	124975188	2951599	0	+	0.35	(0.32,0.35]	chr6	277674	31	INTRON	INTRON	RNF217	ENSG00000146373.17	ENST00000521654.7:ENST00000560949.5:ENST00000519565.5:ENST00000454842.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	57	2	1.88909	2.19419	2.49929	0.0553737	0.00776612	0.165463	0.0787356
chr18	73251195	73251284	6988486	0	-	0.370787	(0.35,0.378]	chr18	691708	1	INTRON	INTRON	LINC02864	ENSG00000263711.6	ENST00000584544.5:ENST00000581011.5:ENST00000581862.6:ENST00000669547.1:ENST00000661525.1:ENST00000583405.5:ENST00000582571.2	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	7	89	2	1.99351	2.194175	2.39484	0.020841	0.00186176	0.111648	0.039946
chr22	21434295	21434395	7481342	0	+	0.39	(0.378,0.408]	chr22	763209	132	INTRON	INTRON	HIC2	ENSG00000169635.10	ENST00000407464.7:ENST00000407598.2	protein_coding	protein_coding	protein_coding	protein_coding	4	45	2	1.72045	2.19415	2.66785	0.0424671	0.0224639	0.161763	0.11692
chr4	10098291	10098391	2107238	0	-	0.38	(0.378,0.408]	chr4	208472	4	SS3_PROX	SS3_PROX:INTRON	WDR1	ENSG00000071127.17	ENST00000499869.7:ENST00000382451.6:ENST00000382452.6:ENST00000502702.5:ENST00000508079.1:ENST00000264785.11:ENST00000505851.5:ENST00000514319.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	45	2	1.72045	2.19415	2.66785	0.0424671	0.0224639	0.161763	0.11692
chr12	12235668	12235768	5270742	0	-	0.46	(0.44,0.476]	chr12	502401	319	INTRON	INTRON	LRP6	ENSG00000070018.9	ENST00000261349.9:ENST00000538239.5:ENST00000543091.1:ENST00000535731.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	36	2	2.00609	2.19414	2.38219	0.045456	0.0360127	0.152355	0.149888
chr2	61354679	61354778	1129382	0	-	0.474747	(0.44,0.476]	chr2	121448	36	INTRON	INTRON	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000453133.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	36	2	2.00609	2.19414	2.38219	0.045456	0.0360127	0.152355	0.149888
chr20	63273618	63273711	7299633	0	+	0.44086	(0.44,0.476]	chr20	742740	1	SS3_PROX	SS3_PROX:SS5_PROX:INTRON	ARFGAP1	ENSG00000101199.13	ENST00000519273.6:ENST00000519604.5:ENST00000523114.5:ENST00000547204.5:ENST00000522959.5:ENST00000549047.5:ENST00000370283.9:ENST00000523460.5:ENST00000520485.5:ENST00000524192.6:ENST00000519531.5:ENST00000370275.8:ENST00000518601.6:ENST00000353546.7:ENST00000522403.6:ENST00000550188.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	36	2	2.00609	2.19414	2.38219	0.045456	0.0360127	0.152355	0.149888
chr5	32598664	32598763	2334887	0	+	0.292929	(0.28,0.32]	chr5	225370	39	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	SUB1	ENSG00000113387.12	ENST00000506237.5:ENST00000512913.5:ENST00000513013.5:ENST00000265073.9:ENST00000511615.5:ENST00000515355.5:ENST00000502897.5:ENST00000504789.5:ENST00000504016.1:ENST00000511175.1:ENST00000502453.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	75	2	1.83303	2.19412	2.55521	0.0370023	0.0067419	0.139194	0.0739405
chr7	65064298	65064398	3321635	0	+	0.36	(0.35,0.378]	chr7	308810	254	INTRON	INTRON	CCT6P3	ENSG00000234585.6	ENST00000419314.5:ENST00000426828.5	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript	3	40	2	1.81767	2.19408	2.57049	0.0640429	0.0262669	0.177882	0.133676
chr19	52648253	52648353	7206706	0	-	0.39	(0.378,0.408]	chr19	731394	100	INTRON	INTRON	ZNF83	ENSG00000167766.20	ENST00000600714.5:ENST00000601257.5:ENST00000594682.6:ENST00000687234.1:ENST00000598536.5:ENST00000595171.5:ENST00000596440.5:ENST00000602232.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	45	2	1.65821	2.19407	2.72993	0.0506302	0.0188736	0.17547	0.108861
chr4	73203398	73203498	2160272	0	-	0.4	(0.378,0.408]	chr4	212794	255	INTRON	INTRON	ANKRD17	ENSG00000132466.20	ENST00000358602.9:ENST00000558247.5:ENST00000330838.10:ENST00000509867.6:ENST00000561029.1:ENST00000559367.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	45	2	1.65821	2.19407	2.72993	0.0506302	0.0188736	0.17547	0.108861
chr12	76852921	76853018	5174768	0	+	0.237113	[0,0.28]	chr12	490191	21	UTR3	UTR3:EXON_MRNA	ZDHHC17	ENSG00000186908.15	ENST00000426126.7	protein_coding	protein_coding	protein_coding	protein_coding	3	52	2	2.05756	2.194055	2.33055	0.062338	0.0352544	0.175343	0.150301
chr5	6731911	6732011	2316020	0	+	0.44	(0.408,0.44]	chr5	224267	164	INTRON	INTRON	TENT4A	ENSG00000112941.14	ENST00000230859.8:ENST00000515721.1:ENST00000631941.2	protein_coding	protein_coding	protein_coding	protein_coding	9	88	2	1.59687	2.194055	2.79124	0.0164598	0.00276922	0.110142	0.0469265
chr1	225412153	225412253	645592	0	-	0.3	(0.28,0.32]	chr1	76352	3	SS5_PROX	SS5_PROX:INTRON	LBR	ENSG00000143815.15	ENST00000272163.9:ENST00000338179.6:ENST00000651341.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	166	2	2.05128	2.19401	2.33674	0.00413289	0.00217456	0.0566868	0.0435108
chr17	82114662	82114762	6851438	0	-	0.59	(0.57,1]	chr17	678956	5	INTRON	INTRON	CCDC57	ENSG00000176155.21	ENST00000694881.1:ENST00000389641.9:ENST00000694882.1:ENST00000665763.1:ENST00000578910.2:ENST00000392345.6:ENST00000583593.2:ENST00000419322.6:ENST00000392346.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	20	2	2.02391	2.19401	2.36411	0.0408868	0.0339274	0.161534	0.134508
chr19	10331417	10331515	7135489	0	-	0.581633	(0.57,1]	chr19	719372	5	INTRON	INTRON	RAVER1	ENSG00000161847.14	ENST00000617231.5:ENST00000592208.5:ENST00000611074.4:ENST00000615032.4:ENST00000591969.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	20	2	2.02391	2.19401	2.36411	0.0408868	0.0339274	0.161534	0.134508
chr9	92287106	92287204	4287279	0	-	0.377551	(0.35,0.378]	chr9	394252	6	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	IARS1	ENSG00000196305.19	ENST00000375643.7:ENST00000443024.7:ENST00000447699.7:ENST00000683537.1:ENST00000684726.1:ENST00000683192.1:ENST00000683565.1:ENST00000682756.1:ENST00000684542.1:ENST00000683793.1:ENST00000683817.1:ENST00000682141.1:ENST00000682893.1:ENST00000684557.1:ENST00000498025.2:ENST00000682156.1:ENST00000627121.3:ENST00000683469.1:ENST00000683495.1:ENST00000682578.1:ENST00000682533.1:ENST00000472894.2:ENST00000684757.1:ENST00000684445.1:ENST00000683376.1:ENST00000683679.1:ENST00000683119.1:ENST00000490438.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	122	2	1.53286	2.19401	2.85516	0.0112634	0.00239229	0.0944169	0.0440612
chr14	102668598	102668698	5823293	0	+	0.49	(0.476,0.515]	chr14	552490	749	INTRON	INTRON	RCOR1	ENSG00000089902.10	ENST00000262241.7	protein_coding	protein_coding	protein_coding	protein_coding	6	69	2	2.10874	2.19397	2.2792	0.0285608	0.00299196	0.12666	0.0503888
chr12	93379489	93379589	5188955	0	+	0.34	(0.32,0.35]	chr12	490782	3	INTRON	INTRON	NUDT4	ENSG00000173598.14	ENST00000337179.9:ENST00000415493.7:ENST00000549992.5:ENST00000550056.5:ENST00000547014.5:ENST00000548662.5:ENST00000546925.1	protein_coding	protein_coding	protein_coding	protein_coding	8	98	2	2.00211	2.193965	2.38582	0.0138529	0.00445465	0.0953077	0.0610799
chr2	15342922	15343021	1070947	0	-	0.343434	(0.32,0.35]	chr2	114279	118	INTRON	INTRON	NBAS	ENSG00000151779.13	ENST00000281513.10:ENST00000442506.5	protein_coding	protein_coding	protein_coding	protein_coding	4	57	2	2.1362	2.193965	2.25173	0.0291083	0.0180122	0.128029	0.114436
chr20	64261640	64261737	7302235	0	+	0.329897	(0.32,0.35]	chr20	743370	10	INTRON	INTRON	PCMTD2	ENSG00000203880.12	ENST00000299468.11:ENST00000369758.8:ENST00000308824.11:ENST00000609372.1:ENST00000609764.1:ENST00000610074.1:ENST00000608844.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	57	2	2.1362	2.193965	2.25173	0.0291083	0.0180122	0.128029	0.114436
chrX	110024143	110024243	7700248	0	+	0.34	(0.32,0.35]	chrX	788130	196	INTRON	INTRON	TMEM164	ENSG00000157600.12	ENST00000372072.7:ENST00000471255.5:ENST00000372073.5:ENST00000372068.7:ENST00000288381.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	57	2	2.1362	2.193965	2.25173	0.0291083	0.0180122	0.128029	0.114436
chr4	17623993	17624091	1926946	0	+	0.316327	(0.28,0.32]	chr4	193699	3	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	MED28	ENSG00000118579.13	ENST00000237380.12:ENST00000503945.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	127	2	1.24333	2.19395	3.14457	0.047053	9.588e-4	0.16845	0.0282401
chr11	47237024	47237118	4787970	0	+	0.382979	(0.378,0.408]	chr11	442883	11	INTRON	INTRON	DDB2	ENSG00000134574.12	ENST00000256996.9:ENST00000378601.7:ENST00000612309.4:ENST00000617022.4:ENST00000616278.4:ENST00000378600.7:ENST00000378603.7:ENST00000617847.4:ENST00000620515.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	63	2	1.38218	2.19393	3.00568	0.0444424	0.00811866	0.162728	0.0766625
chr9	124395568	124395668	4346456	0	-	0.46	(0.44,0.476]	chr9	399165	106	INTRON	INTRON	PSMB7	ENSG00000136930.13	ENST00000259457.8:ENST00000498485.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	36	2	1.85146	2.19393	2.5364	0.0545846	0.0309324	0.182529	0.13151
chr2	144484824	144484924	1241452	0	-	0.37	(0.35,0.378]	chr2	131732	26	INTRON	INTRON	ZEB2	ENSG00000169554.23	ENST00000636471.1:ENST00000627532.3:ENST00000638128.1:ENST00000637304.1:ENST00000636179.1:ENST00000419938.5:ENST00000409487.7:ENST00000636732.2:ENST00000636026.2:ENST00000675069.1:ENST00000689298.1:ENST00000539609.7:ENST00000558170.6:ENST00000303660.8:ENST00000427902.5:ENST00000637267.2:ENST00000392861.6:ENST00000431672.4:ENST00000409211.5:ENST00000465308.5:ENST00000434448.5:ENST00000472146.5:ENST00000461784.3:ENST00000476394.5:ENST00000637591.2:ENST00000479735.1:ENST00000453352.5:ENST00000435831.5:ENST00000444559.5:ENST00000630572.2:ENST00000484313.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	18	225	2	1.89796	2.193925	2.48989	0.00238687	2.95882e-4	0.0450133	0.0159818
chr2	61365337	61365437	1129489	0	-	0.34	(0.32,0.35]	chr2	121448	143	INTRON	INTRON	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000453133.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	83	2	2.16099	2.1937699999999998	2.22655	0.0127227	0.00823133	0.0926667	0.0812969
chr1	110364982	110365082	182601	0	+	0.43	(0.408,0.44]	chr1	20257	86	INTRON	INTRON	LAMTOR5-AS1	ENSG00000224699.10	ENST00000626572.2	lncRNA	lncRNA	lncRNA	lncRNA	7	81	2	2.12303	2.193715	2.2644	0.00768371	0.00586883	0.0753803	0.0690758
chr10	926731	926831	4542538	0	-	0.55	(0.515,0.57]	chr10	419310	19	INTRON	INTRON	LARP4B	ENSG00000107929.16	ENST00000316157.8:ENST00000690516.1:ENST00000476529.5:ENST00000406525.6:ENST00000481118.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	43	2	1.94945	2.19364	2.43783	0.0414068	0.00916404	0.161557	0.0812949
chr19	11146693	11146781	7136878	0	-	0.534091	(0.515,0.57]	chr19	719785	4	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	SPC24	ENSG00000161888.12	ENST00000585567.5:ENST00000592540.6:ENST00000591396.5:ENST00000592967.5	protein_coding	protein_coding	protein_coding	protein_coding	6	61	2	2.06206	2.193635	2.3252100000000002	0.0135396	0.00525266	0.101363	0.0633615
chr12	108676677	108676776	5406224	0	-	0.484848	(0.476,0.515]	chr12	516004	142	INTRON	INTRON	CORO1C	ENSG00000110880.11	ENST00000261401.8:ENST00000420959.6:ENST00000541050.5:ENST00000549384.5:ENST00000421578.6:ENST00000550542.5:ENST00000549772.5:ENST00000552871.5:ENST00000547294.5:ENST00000550032.5:ENST00000551550.5:ENST00000546571.5:ENST00000551044.1:ENST00000547170.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	36	2	2.06491	2.193605	2.3223	0.0519312	0.0304733	0.159306	0.143385
chr13	19769654	19769753	5552812	0	-	0.50505	(0.476,0.515]	chr13	530722	99	INTRON	INTRON	PSPC1	ENSG00000121390.19	ENST00000471658.5:ENST00000492741.5:ENST00000338910.9:ENST00000619300.4:ENST00000427943.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	36	2	2.06491	2.193605	2.3223	0.0519312	0.0304733	0.159306	0.143385
chr1	110357724	110357823	182528	0	+	0.454545	(0.44,0.476]	chr1	20257	13	INTRON	INTRON	LAMTOR5-AS1	ENSG00000224699.10	ENST00000626572.2	lncRNA	lncRNA	lncRNA	lncRNA	6	72	2	2.03266	2.1935599999999997	2.35446	0.0155853	0.00536475	0.109411	0.0642754
chr21	39238078	39238178	7464767	0	-	0.38	(0.378,0.408]	chr21	760465	2	SS5_PROX	SS5_PROX:INTRON	BRWD1	ENSG00000185658.14	ENST00000333229.6:ENST00000342449.8:ENST00000446924.5:ENST00000380800.7:ENST00000430093.5:ENST00000445245.5:ENST00000445668.5:ENST00000412604.1:ENST00000455867.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	60	2	1.78414	2.19355	2.60296	0.0267851	0.0144669	0.123349	0.105142
chr5	32162258	32162358	2597395	0	-	0.49	(0.476,0.515]	chr5	246744	180	INTRON	INTRON	GOLPH3	ENSG00000113384.14	ENST00000265070.7:ENST00000503610.5:ENST00000512668.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	97	2	1.82399	2.19345	2.56291	0.00866166	0.00222582	0.0842392	0.0421176
chr14	39181959	39182056	5700151	0	+	0.257732	[0,0.28]	chr14	541911	2	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	PNN	ENSG00000100941.9	ENST00000216832.9:ENST00000557680.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	86	2	2.09899	2.193425	2.28786	0.0371453	0.00782185	0.139304	0.0788675
chr1	32657773	32657873	65896	0	+	0.3	(0.28,0.32]	chr1	8421	2	SS5_PROX	SS5_PROX:INTRON	RBBP4	ENSG00000162521.19	ENST00000414241.7:ENST00000527118.5:ENST00000373493.10:ENST00000401893.7:ENST00000524393.5:ENST00000492348.6:ENST00000526193.5:ENST00000373485.5:ENST00000477563.6:ENST00000458695.6:ENST00000445722.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	135	2	1.79956	2.193355	2.58715	0.00854778	0.00300718	0.0836935	0.0493883
chr9	124519643	124519742	4346688	0	-	0.50505	(0.476,0.515]	chr9	399204	25	UTR3	UTR3:EXON_MRNA	NR6A1	ENSG00000148200.17	ENST00000487099.7	protein_coding	protein_coding	protein_coding	protein_coding	8	89	2	1.95422	2.19332	2.43242	0.0091895	0.00584847	0.0855292	0.0667594
chr20	3909596	3909692	7227103	0	+	0.541667	(0.515,0.57]	chr20	734495	3	INTRON	INTRON	PANK2	ENSG00000125779.24	ENST00000497424.5:ENST00000316562.9:ENST00000495692.5:ENST00000610179.7:ENST00000643504.2:ENST00000336066.8:ENST00000646394.1:ENST00000621507.1:ENST00000471830.1:ENST00000464452.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	60	2	2.06758	2.1933	2.31902	0.0140038	0.00493032	0.0959618	0.0646039
chr7	24624456	24624556	3291231	0	+	0.34	(0.32,0.35]	chr7	305735	3	SS5_PROX	SS5_PROX:INTRON	PALS2	ENSG00000105926.16	ENST00000432190.5:ENST00000409761.5:ENST00000222644.10:ENST00000396475.6:ENST00000430180.5:ENST00000426450.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	42	2	2.07985	2.19329	2.30673	0.0584434	0.0303092	0.167723	0.143025
chr22	16793984	16794084	7546339	0	-	0.32	(0.28,0.32]	chr22	771315	92	INTRON	INTRON	XKR3	ENSG00000172967.8	ENST00000331428.5:ENST00000684488.1	protein_coding	protein_coding	protein_coding	protein_coding	7	104	2	1.97026	2.1932549999999997	2.41625	0.0154633	0.00419958	0.100909	0.0592209
chr1	55064461	55064559	108739	0	+	0.561224	(0.515,0.57]	chr1	14230	10	UTR3	UTR3:EXON_MRNA	PCSK9	ENSG00000169174.11	ENST00000302118.5:ENST00000673903.1:ENST00000490692.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	11	107	2	2.16757	2.193245	2.21892	0.00198472	0.00185521	0.0411469	0.0389415
chr7	135603394	135603494	3428791	0	+	0.39	(0.378,0.408]	chr7	319720	4	SS5_PROX	SS5_PROX:INTRON	NUP205	ENSG00000155561.15	ENST00000285968.11:ENST00000607647.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	71	2	2.16303	2.19319	2.22335	0.0252473	0.00388279	0.12011	0.0567196
chr22	49600759	49600859	7602088	0	-	0.53	(0.515,0.57]	chr22	778570	51	INTRON	INTRON	MIR3667HG	ENSG00000188511.13	ENST00000414287.5:ENST00000416411.1:ENST00000689875.1	lncRNA	lncRNA	lncRNA	lncRNA	4	42	2	1.8707	2.193155	2.51561	0.0523213	0.00635044	0.160182	0.0723103
chr12	91384629	91384729	5383058	0	-	0.41	(0.408,0.44]	chr12	513463	143	INTRON	INTRON	ENSG00000289605	ENSG00000289605.1	ENST00000685093.1	lncRNA	lncRNA	lncRNA	lncRNA	5	59	2	1.69172	2.193145	2.69457	0.0486032	0.00331036	0.153946	0.0527031
chr5	179851924	179852020	2780204	0	-	0.4375	(0.408,0.44]	chr5	262453	1	INTRON	INTRON	MRNIP	ENSG00000161010.16	ENST00000522663.5:ENST00000518235.5:ENST00000520698.5:ENST00000376931.6:ENST00000523084.5:ENST00000292586.11:ENST00000518219.5:ENST00000521299.5:ENST00000521333.5:ENST00000520150.5:ENST00000519208.5:ENST00000523737.5:ENST00000520995.5:ENST00000524068.5:ENST00000522157.5:ENST00000523835.5:ENST00000519213.1:ENST00000519318.5:ENST00000517338.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	59	2	1.69172	2.193145	2.69457	0.0486032	0.00331036	0.153946	0.0527031
chr3	177078878	177078978	1871246	0	-	0.51	(0.476,0.515]	chr3	187372	1	SS3_PROX	SS3_PROX:INTRON	TBL1XR1	ENSG00000177565.18	ENST00000457928.7:ENST00000430069.5:ENST00000673974.1:ENST00000631253.2:ENST00000352800.10:ENST00000422442.6:ENST00000428970.5:ENST00000424913.5:ENST00000437738.5:ENST00000431421.5:ENST00000635794.1:ENST00000630796.2:ENST00000450267.5:ENST00000630833.2:ENST00000431674.5:ENST00000422066.5:ENST00000443315.5:ENST00000627825.2:ENST00000427349.5:ENST00000413084.5:ENST00000637137.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	58	2	2.06898	2.19312	2.31726	0.015077	0.0137491	0.10247	0.0994339
chr12	91395015	91395115	5383162	0	-	0.62	(0.57,1]	chr12	513463	247	INTRON	INTRON	ENSG00000289605	ENSG00000289605.1	ENST00000685093.1	lncRNA	lncRNA	lncRNA	lncRNA	7	45	2	1.52818	2.1931	2.85802	0.0508101	3.01883e-4	0.175989	0.0160895
chr11	756284	756356	4720425	0	+	0.444444	(0.44,0.476]	chr11	436399	1	SS5_PROX	SS5_PROX:INTRON	TALDO1	ENSG00000177156.11	ENST00000528070.5:ENST00000528097.5:ENST00000530440.1:ENST00000319006.8:ENST00000530119.5:ENST00000533796.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	21	231	2	2.15961	2.1930199999999997	2.22643	9.92499e-4	2.2146e-4	0.028873	0.0130616
chr17	76735380	76735478	6844238	0	-	0.295918	(0.28,0.32]	chr17	677087	14	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SRSF2	ENSG00000161547.17	ENST00000392485.2:ENST00000359995.10:ENST00000585202.5:ENST00000582449.5:ENST00000586778.1:ENST00000452355.7:ENST00000589919.1:ENST00000508921.7:ENST00000592676.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	59	794	2	1.98083	2.1930199999999997	2.40521	2.87983e-4	1.56321e-4	0.0150627	0.011366
chr2	75703322	75703422	1159693	0	-	0.35	(0.32,0.35]	chr2	124315	5	INTRON	INTRON	GCFC2	ENSG00000005436.14	ENST00000321027.8:ENST00000541687.5:ENST00000409857.7:ENST00000472230.5:ENST00000442309.5:ENST00000470503.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	42	2	1.81328	2.192955	2.57263	0.0615716	0.0312297	0.193423	0.13151
chr2	232777900	232777999	1038070	0	+	0.323232	(0.32,0.35]	chr2	110720	7	INTRON	INTRON	GIGYF2	ENSG00000204120.16	ENST00000629305.2:ENST00000409480.5:ENST00000373563.9:ENST00000409547.5:ENST00000423659.5:ENST00000409196.7:ENST00000409451.7:ENST00000440945.5:ENST00000424038.2:ENST00000677591.1:ENST00000678230.1:ENST00000678339.1:ENST00000677450.1:ENST00000678466.1:ENST00000678885.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	42	2	1.81328	2.192955	2.57263	0.0615716	0.0312297	0.193423	0.13151
chr7	149481143	149481243	3671667	0	-	0.35	(0.32,0.35]	chr7	340777	30	INTRON	INTRON	ZNF746	ENSG00000181220.18	ENST00000644635.1:ENST00000340622.8:ENST00000458143.7:ENST00000685153.1	protein_coding	protein_coding	protein_coding	protein_coding	3	42	2	1.81328	2.192955	2.57263	0.0615716	0.0312297	0.193423	0.13151
chr1	168007889	168007989	249211	0	+	0.28	[0,0.28]	chr1	29602	27	INTRON	INTRON	DCAF6	ENSG00000143164.16	ENST00000432587.6:ENST00000367843.7:ENST00000470721.5:ENST00000367840.4:ENST00000312263.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	191	2	2.05976	2.1929299999999996	2.3261	0.00538874	0.00261312	0.0643592	0.0470772
chr11	78107764	78107864	4998008	0	-	0.44	(0.408,0.44]	chr11	472319	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	ALG8	ENSG00000159063.14	ENST00000679559.1:ENST00000680398.1:ENST00000681221.1:ENST00000527099.2:ENST00000681489.1:ENST00000525783.6:ENST00000529139.6:ENST00000680761.1:ENST00000525870.6:ENST00000680866.1:ENST00000680223.1:ENST00000526737.6:ENST00000681575.1:ENST00000299626.10:ENST00000680467.1:ENST00000679497.1:ENST00000681351.1:ENST00000679697.1:ENST00000680580.1:ENST00000526849.6:ENST00000680256.1:ENST00000680797.1:ENST00000681723.1:ENST00000680142.1:ENST00000679685.1:ENST00000681384.1:ENST00000679874.1:ENST00000679444.1:ENST00000680459.1:ENST00000681699.1:ENST00000679986.1:ENST00000680063.1:ENST00000530608.6:ENST00000681765.1:ENST00000681225.1:ENST00000681417.1:ENST00000530910.6:ENST00000680329.1:ENST00000679581.1:ENST00000524925.2:ENST00000681853.1:ENST00000376156.7:ENST00000679648.1:ENST00000680101.1:ENST00000680829.1:ENST00000680499.1:ENST00000525761.3:ENST00000532440.6:ENST00000680996.1:ENST00000532306.6:ENST00000680399.1:ENST00000679539.1:ENST00000615266.5:ENST00000681957.1:ENST00000532552.2:ENST00000680643.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	45	2	1.64062	2.1929	2.74518	0.0557275	0.0152229	0.165463	0.108535
chr12	132636721	132636820	5448623	0	-	0.424242	(0.408,0.44]	chr12	521693	3	INTRON	INTRON	POLE	ENSG00000177084.18	ENST00000320574.10:ENST00000434528.4:ENST00000672742.1:ENST00000672002.1:ENST00000537064.5:ENST00000535270.5:ENST00000541213.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	45	2	1.64062	2.1929	2.74518	0.0557275	0.0152229	0.165463	0.108535
chr4	39854239	39854339	2130932	0	-	0.41	(0.408,0.44]	chr4	210094	42	INTRON	INTRON	PDS5A	ENSG00000121892.15	ENST00000303538.13	protein_coding	protein_coding	protein_coding	protein_coding	4	45	2	1.64062	2.1929	2.74518	0.0557275	0.0152229	0.165463	0.108535
chr7	111413396	111413496	3622620	0	-	0.23	[0,0.28]	chr7	337108	206	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000452895.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding	7	109	2	1.78874	2.1929	2.59706	0.0175354	0.00894925	0.11319	0.0799922
chr1	153915040	153915140	557688	0	-	0.5	(0.476,0.515]	chr1	66000	3	SS3_PROX	SS3_PROX:INTRON	GATAD2B	ENSG00000143614.10	ENST00000368655.5:ENST00000634544.1:ENST00000634408.1:ENST00000634401.1:ENST00000634791.1:ENST00000637331.1:ENST00000636008.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	67	2	1.4553	2.19288	2.93046	0.0623645	0.00118985	0.175357	0.031662
chr22	19113543	19113642	7551926	0	-	0.484848	(0.476,0.515]	chr22	771903	237	INTRON	INTRON	DGCR2	ENSG00000070413.20	ENST00000537045.5:ENST00000545799.5:ENST00000263196.12:ENST00000389262.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	92	2	2.17892	2.19285	2.20678	0.00484957	0.0046578	0.0629753	0.0605773
chr6	24719056	24719154	3070727	0	-	0.479592	(0.476,0.515]	chr6	285369	5	UTR5	UTR5:EXON_MRNA:INTRON	C6orf62	ENSG00000112308.13	ENST00000378119.9:ENST00000378102.3	protein_coding	protein_coding	protein_coding	protein_coding	18	195	2	1.94192	2.192845	2.44377	0.0014343	3.85728e-4	0.0347139	0.0182738
chr2	15532642	15532742	1072875	0	-	0.24	[0,0.28]	chr2	114441	209	INTRON	INTRON	NBAS	ENSG00000151779.13	ENST00000281513.10	protein_coding	protein_coding	protein_coding	protein_coding	7	88	2	1.37274	2.192805	3.01287	0.0517795	0.0115634	0.176696	0.0889104
chr6	147665905	147666004	2990654	0	+	0.474747	(0.44,0.476]	chr6	280159	47	INTRON	INTRON	ENSG00000227681	ENSG00000227681.5	ENST00000427015.1:ENST00000432506.5	lncRNA	lncRNA	lncRNA	lncRNA	15	165	2	2.17256	2.192795	2.21303	0.0018823	6.19207e-4	0.0391433	0.0223951
chr11	130138678	130138777	4886421	0	+	0.464646	(0.44,0.476]	chr11	457008	10	INTRON	INTRON	APLP2	ENSG00000084234.18	ENST00000650012.1:ENST00000533616.5:ENST00000338167.10:ENST00000528499.5:ENST00000263574.9:ENST00000345598.9:ENST00000278756.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	105	2	1.84951	2.19279	2.53607	0.00567535	0.00255314	0.0678837	0.0449364
chr1	19211255	19211353	38687	0	+	0.540816	(0.515,0.57]	chr1	4632	3	INTRON	INTRON	EMC1-AS1	ENSG00000230424.2	ENST00000437898.2:ENST00000690421.1	lncRNA	lncRNA	lncRNA	lncRNA	4	42	2	2.11313	2.192755	2.27238	0.0256725	0.0161808	0.133676	0.101453
chr5	38973053	38973152	2604624	0	-	0.393939	(0.378,0.408]	chr5	247847	7	INTRON	INTRON	RICTOR	ENSG00000164327.13	ENST00000357387.8:ENST00000511516.5:ENST00000296782.9:ENST00000510711.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	46	2	1.99678	2.192755	2.38873	0.0458857	0.0177959	0.149888	0.113452
chr9	130833753	130833853	4215062	0	+	0.44	(0.408,0.44]	chr9	386427	1189	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000393293.4	protein_coding	protein_coding	protein_coding	protein_coding	7	75	2	1.62843	2.19275	2.75707	0.025242	0.00317496	0.133676	0.0503542
chr19	17267927	17268027	7029459	0	+	0.47	(0.44,0.476]	chr19	699843	4	SS5_PROX	SS5_PROX:INTRON	BABAM1	ENSG00000105393.16	ENST00000594247.5:ENST00000447614.6:ENST00000359435.8:ENST00000599474.5:ENST00000598188.6:ENST00000601043.5:ENST00000595393.5:ENST00000599057.5:ENST00000601171.5:ENST00000596335.5:ENST00000601436.5:ENST00000448635.2:ENST00000595632.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	48	2	1.98938	2.19271	2.39604	0.0404291	0.0198602	0.161534	0.109608
chr1	117445618	117445718	198079	0	+	0.48	(0.476,0.515]	chr1	21949	29	INTRON	INTRON	MAN1A2	ENSG00000198162.12	ENST00000356554.7:ENST00000449370.6	protein_coding	protein_coding	protein_coding	protein_coding	5	59	2	1.80284	2.192685	2.58253	0.033161	0.00600101	0.145899	0.0674604
chr11	67430284	67430382	4815103	0	+	0.520408	(0.515,0.57]	chr11	448443	8	EXON_MRNA	EXON_MRNA:INTRON	RPS6KB2	ENSG00000175634.15	ENST00000530623.5:ENST00000556575.5:ENST00000312629.10:ENST00000524814.5:ENST00000524934.5:ENST00000420069.3:ENST00000528964.5:ENST00000525088.5:ENST00000525996.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	31	2	1.94945	2.19267	2.43589	0.0414068	0.0370871	0.161557	0.139194
chr12	132795435	132795535	5449870	0	-	0.52	(0.515,0.57]	chr12	522043	4	SS5_PROX	SS5_PROX:INTRON	GOLGA3	ENSG00000090615.16	ENST00000204726.9:ENST00000450791.8:ENST00000693666.1:ENST00000688114.1:ENST00000687190.1:ENST00000690511.1:ENST00000685283.1:ENST00000691696.1:ENST00000691636.1:ENST00000690897.1:ENST00000690465.1:ENST00000456883.7:ENST00000692253.1:ENST00000687502.1:ENST00000688772.1:ENST00000687479.1:ENST00000690709.1:ENST00000545875.4:ENST00000688251.1:ENST00000690573.1:ENST00000685195.1:ENST00000686425.1:ENST00000693437.1:ENST00000692831.1:ENST00000688068.1:ENST00000692951.1:ENST00000689441.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	31	2	1.94945	2.19267	2.43589	0.0414068	0.0370871	0.161557	0.139194
chr17	73303007	73303107	6835467	0	-	0.54	(0.515,0.57]	chr17	675279	158	INTRON	INTRON	CDC42EP4	ENSG00000179604.10	ENST00000335793.4:ENST00000439510.2:ENST00000581014.1:ENST00000580315.1:ENST00000579611.1:ENST00000581045.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	31	2	1.94945	2.19267	2.43589	0.0414068	0.0370871	0.161557	0.139194
chr19	10806937	10807032	7014684	0	+	0.536842	(0.515,0.57]	chr19	697017	6	INTRON	INTRON	DNM2	ENSG00000079805.19	ENST00000355667.11:ENST00000389253.9:ENST00000585892.5:ENST00000359692.10:ENST00000408974.8:ENST00000587830.2:ENST00000681972.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	31	2	1.94945	2.19267	2.43589	0.0414068	0.0370871	0.161557	0.139194
chr22	21597056	21597156	7481998	0	+	0.54	(0.515,0.57]	chr22	763238	37	INTRON	INTRON	UBE2L3	ENSG00000185651.16	ENST00000458578.6:ENST00000545681.2:ENST00000696046.1:ENST00000342192.9:ENST00000496722.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	31	2	1.94945	2.19267	2.43589	0.0414068	0.0370871	0.161557	0.139194
chr9	96594621	96594721	4296445	0	-	0.53	(0.515,0.57]	chr9	395079	275	INTRON	INTRON	CDC14B	ENSG00000081377.17	ENST00000474602.5:ENST00000412285.6:ENST00000375241.6:ENST00000375240.7:ENST00000463569.5:ENST00000415608.1:ENST00000496750.5:ENST00000463547.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	31	2	1.94945	2.19267	2.43589	0.0414068	0.0370871	0.161557	0.139194
chr9	112713763	112713863	4318268	0	-	0.54	(0.515,0.57]	chr9	397118	115	INTRON	INTRON	INIP	ENSG00000148153.14	ENST00000374242.9:ENST00000497712.6:ENST00000374236.5:ENST00000481146.6:ENST00000374234.1:ENST00000476599.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	31	2	1.94945	2.19267	2.43589	0.0414068	0.0370871	0.161557	0.139194
chr9	97008767	97008866	4298941	0	-	0.474747	(0.44,0.476]	chr9	395262	355	INTRON	INTRON	MFSD14C	ENSG00000196312.15	ENST00000647176.1:ENST00000645073.1:ENST00000637864.1:ENST00000652726.1:ENST00000637811.1:ENST00000650909.1	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript:transcribed_unprocessed_pseudogene	8	90	2	1.82106	2.1926449999999997	2.56423	0.0124107	0.00226303	0.0973643	0.0425438
chr10	87098887	87098987	4481281	0	+	0.54	(0.515,0.57]	chr10	412411	15	INTRON	INTRON	SHLD2	ENSG00000122376.12	ENST00000437629.6:ENST00000298784.5:ENST00000298786.5	protein_coding	protein_coding	protein_coding	protein_coding	3	31	2	1.86007	2.192555	2.52504	0.0526611	0.029342	0.178401	0.128055
chr11	64217764	64217863	4802361	0	+	0.545455	(0.515,0.57]	chr11	445346	57	INTRON	INTRON	FERMT3	ENSG00000149781.13	ENST00000544997.5:ENST00000345728.10:ENST00000279227.9:ENST00000541326.5:ENST00000546255.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	31	2	1.86007	2.192555	2.52504	0.0526611	0.029342	0.178401	0.128055
chr19	40456703	40456801	7184490	0	-	0.520408	(0.515,0.57]	chr19	726746	49	INTRON	INTRON	BLVRB	ENSG00000090013.11	ENST00000643519.1:ENST00000263368.9:ENST00000595483.5:ENST00000643596.1:ENST00000601346.5:ENST00000597870.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	31	2	1.86007	2.192555	2.52504	0.0526611	0.029342	0.178401	0.128055
chr8	125134737	125134837	3853913	0	+	0.52	(0.515,0.57]	chr8	355228	40	INTRON	INTRON	NSMCE2	ENSG00000156831.8	ENST00000523741.5:ENST00000517532.5:ENST00000520866.5:ENST00000519010.5:ENST00000287437.8:ENST00000522563.5:ENST00000523824.5:ENST00000518146.5:ENST00000523549.1:ENST00000519712.1:ENST00000517315.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	31	2	1.86007	2.192555	2.52504	0.0526611	0.029342	0.178401	0.128055
chr10	63341784	63341884	4634148	0	-	0.36	(0.35,0.378]	chr10	426226	727	INTRON	INTRON	JMJD1C	ENSG00000171988.20	ENST00000399262.7:ENST00000633035.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	49	2	1.6599	2.19244	2.72498	0.0545616	0.0168499	0.165292	0.11068
chr15	22578253	22578352	5975387	0	+	0.50505	(0.476,0.515]	chr15	568232	3	INTRON	INTRON	HERC2P2	ENSG00000276550.5	ENST00000613386.4:ENST00000619021.4:ENST00000690192.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	7	74	2	1.61324	2.192375	2.77151	0.026684	0.00288481	0.134419	0.0475859
chr4	25796725	25796824	2119956	0	-	0.373737	(0.35,0.378]	chr4	209416	58	INTRON	INTRON	SEL1L3	ENSG00000091490.11	ENST00000264868.9:ENST00000399878.8:ENST00000502949.5	protein_coding	protein_coding	protein_coding	protein_coding	7	84	2	2.14824	2.192375	2.23651	0.020879	0.00327182	0.111766	0.052643
chr7	107066734	107066834	3377386	0	+	0.44	(0.408,0.44]	chr7	316240	212	INTRON	INTRON	PRKAR2B	ENSG00000005249.13	ENST00000265717.5	protein_coding	protein_coding	protein_coding	protein_coding	5	50	2	1.60344	2.19233	2.78122	0.0387506	0.015812	0.160156	0.101453
chr7	152327706	152327806	3680206	0	-	0.5	(0.476,0.515]	chr7	341641	120	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000684262.1:ENST00000682301.1:ENST00000452749.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	58	2	2.01953	2.192265	2.365	0.0163662	0.0128901	0.109586	0.0926667
chr14	31006055	31006155	5857670	0	-	0.43	(0.408,0.44]	chr14	556508	417	INTRON	INTRON	STRN3	ENSG00000196792.12	ENST00000355683.9:ENST00000357479.10:ENST00000555358.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	90	2	1.85123	2.19218	2.53313	0.00739595	0.00562669	0.074277	0.0678837
chr8	129524972	129525072	4060532	0	-	0.39	(0.378,0.408]	chr8	369648	144	INTRON	INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1:ENST00000676273.1:ENST00000667643.1:ENST00000668791.1:ENST00000663716.1:ENST00000663572.1:ENST00000676148.1:ENST00000667962.1:ENST00000674877.1:ENST00000675316.1:ENST00000674656.1:ENST00000446592.7:ENST00000667341.1:ENST00000675186.1:ENST00000652971.1:ENST00000661447.1:ENST00000674863.1:ENST00000675498.1:ENST00000675527.1:ENST00000676108.1:ENST00000657647.1:ENST00000675589.1:ENST00000675913.1:ENST00000675109.1:ENST00000671632.1:ENST00000671311.1:ENST00000676099.1:ENST00000660652.1:ENST00000675522.1:ENST00000675183.1:ENST00000658861.1:ENST00000663991.1:ENST00000675044.1:ENST00000675435.1:ENST00000674639.1:ENST00000676069.1:ENST00000675532.1:ENST00000674762.1:ENST00000523151.6:ENST00000675948.1:ENST00000665364.1:ENST00000657251.1:ENST00000675166.1:ENST00000674883.1:ENST00000675867.1:ENST00000674580.1:ENST00000675393.1:ENST00000520048.1:ENST00000674906.1:ENST00000676030.1:ENST00000670588.1:ENST00000675072.1:ENST00000664936.1:ENST00000652914.1:ENST00000657069.1	lncRNA	lncRNA	lncRNA	lncRNA	7	84	2	1.91906	2.192075	2.46509	0.0153989	0.00287152	0.100621	0.0494641
chrX	111692765	111692864	7702134	0	+	0.40404	(0.378,0.408]	chrX	788221	27	INTRON	INTRON	ALG13	ENSG00000101901.12	ENST00000487141.5:ENST00000394780.8:ENST00000251943.8:ENST00000610588.4:ENST00000621367.4:ENST00000622997.3:ENST00000624161.3:ENST00000636363.1:ENST00000624881.3:ENST00000495283.5:ENST00000486353.5:ENST00000623144.3:ENST00000470971.5:ENST00000623148.3:ENST00000471924.5:ENST00000436609.5:ENST00000470704.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	93	2	2.07903	2.19201	2.30499	0.00683258	0.00428711	0.0713163	0.0599065
chrX	13368057	13368157	7622637	0	+	0.41	(0.408,0.44]	chrX	780353	264	INTRON	INTRON	LINC01203	ENSG00000226985.7	ENST00000669963.1:ENST00000661545.1:ENST00000659526.1:ENST00000656410.1:ENST00000661104.1:ENST00000456091.2:ENST00000655502.1:ENST00000671651.1:ENST00000656979.1:ENST00000656271.1:ENST00000661629.1:ENST00000661464.1:ENST00000668192.1:ENST00000665887.1:ENST00000659191.1:ENST00000667868.1:ENST00000653729.1:ENST00000656111.1	lncRNA	lncRNA	lncRNA	lncRNA	10	115	2	2.15238	2.191995	2.23161	0.00382586	0.00206564	0.0542786	0.04217
chr20	21320401	21320500	7248308	0	+	0.525253	(0.515,0.57]	chr20	735885	166	INTRON	INTRON	XRN2	ENSG00000088930.8	ENST00000377191.5	protein_coding	protein_coding	protein_coding	protein_coding	5	50	2	1.811	2.1919899999999997	2.57298	0.0325989	0.00506495	0.133687	0.0646039
chr7	26193994	26194094	3506161	0	-	0.41	(0.408,0.44]	chr7	327164	3	SS3_PROX	SS3_PROX:INTRON	HNRNPA2B1	ENSG00000122566.22	ENST00000679318.1:ENST00000677339.1:ENST00000678501.1:ENST00000676903.1:ENST00000608362.2:ENST00000677631.1:ENST00000676749.1:ENST00000677574.1:ENST00000679123.1:ENST00000677906.1:ENST00000476233.2:ENST00000677669.1:ENST00000677321.1:ENST00000678277.1:ENST00000677571.1:ENST00000679124.1:ENST00000676932.1:ENST00000678973.1:ENST00000678183.1:ENST00000679021.1:ENST00000678035.1:ENST00000677075.1:ENST00000678075.1:ENST00000678631.1:ENST00000678998.1:ENST00000490912.6:ENST00000354667.8:ENST00000618183.5:ENST00000677839.1:ENST00000677037.1:ENST00000678449.1:ENST00000679001.1:ENST00000678962.1:ENST00000676524.1:ENST00000678935.1:ENST00000678675.1:ENST00000676746.1:ENST00000356674.8:ENST00000678431.1:ENST00000678697.1:ENST00000678779.1:ENST00000676497.1:ENST00000677396.1:ENST00000360787.8:ENST00000679243.1:ENST00000677656.1:ENST00000463181.5:ENST00000678884.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	40	445	2	2.05304	2.1919750000000002	2.33091	3.6116e-4	4.90426e-5	0.017603	0.00572797
chr9	112320263	112320363	4317827	0	-	0.2	[0,0.28]	chr9	397079	220	INTRON	INTRON	PTBP3	ENSG00000119314.16	ENST00000334318.10:ENST00000458258.5:ENST00000374257.6:ENST00000374255.6:ENST00000343327.6:ENST00000487997.1:ENST00000210227.4:ENST00000450374.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	105	2	2.13176	2.191905	2.25205	0.0135097	0.0119684	0.101363	0.0899583
chr1	225412353	225412453	645594	0	-	0.41	(0.408,0.44]	chr1	76353	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	LBR	ENSG00000143815.15	ENST00000272163.9:ENST00000338179.6:ENST00000651341.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	81	2	1.84516	2.191885	2.53861	0.0193431	0.00202413	0.108861	0.0416117
chr6	4839007	4839107	2791489	0	+	0.36	(0.35,0.378]	chr6	263602	23	INTRON	INTRON	CDYL	ENSG00000153046.18	ENST00000328908.9:ENST00000491864.1:ENST00000440139.5:ENST00000483019.1:ENST00000397588.8:ENST00000472453.5:ENST00000449732.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	84	2	1.38772	2.19187	2.99602	0.0555481	0.00133795	0.18407	0.0335491
chr9	136461861	136461948	4374816	0	-	0.54023	(0.515,0.57]	chr9	403041	2	INTRON	INTRON	SEC16A	ENSG00000148396.19	ENST00000290037.10:ENST00000313050.11:ENST00000371706.8:ENST00000453963.5:ENST00000277537.10:ENST00000684901.1:ENST00000690691.1:ENST00000431893.3	protein_coding	protein_coding	protein_coding	protein_coding	6	57	2	1.89462	2.19182	2.48902	0.0139002	0.00760558	0.10247	0.0749571
chr2	127736453	127736550	1225126	0	-	0.381443	(0.378,0.408]	chr2	130482	12	UTR3	UTR3:EXON_MRNA:INTRON	WDR33	ENSG00000136709.12	ENST00000322313.9:ENST00000436787.5:ENST00000393006.5	protein_coding	protein_coding	protein_coding	protein_coding	5	53	2	1.39189	2.191795	2.9917	0.0751636	0.0068789	0.193731	0.0749442
chr1	212888957	212889045	310155	0	+	0.420455	(0.408,0.44]	chr1	35825	4	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	FLVCR1	ENSG00000162769.13	ENST00000366971.9:ENST00000419102.1:ENST00000483790.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	56	2	1.54273	2.19175	2.84077	0.0337312	0.0132196	0.146709	0.0940535
chr1	186401919	186402018	277816	0	+	0.30303	(0.28,0.32]	chr1	32482	25	INTRON	INTRON	ODR4	ENSG00000157181.16	ENST00000367470.8:ENST00000287859.11:ENST00000419367.8:ENST00000478571.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	55	2	1.81152	2.191735	2.57195	0.034446	0.0331711	0.147767	0.133994
chr6	7123274	7123374	2798518	0	+	0.55	(0.515,0.57]	chr6	263723	142	INTRON	INTRON	RREB1	ENSG00000124782.21	ENST00000379933.7:ENST00000491191.5:ENST00000471433.5:ENST00000379938.7:ENST00000467782.5:ENST00000349384.10:ENST00000334984.10:ENST00000475946.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	12	113	2	1.96398	2.19158	2.41918	0.00260705	0.0013845	0.0455276	0.0341261
chr11	46829448	46829548	4948598	0	-	0.49	(0.476,0.515]	chr11	463857	27	INTRON	INTRON	CKAP5	ENSG00000175216.15	ENST00000529230.6:ENST00000312055.9:ENST00000525248.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	49	2	1.79693	2.19154	2.58615	0.0649782	0.00515536	0.179417	0.0650394
chr15	42851222	42851322	6158306	0	-	0.39	(0.378,0.408]	chr15	586277	104	INTRON	INTRON	TTBK2	ENSG00000128881.18	ENST00000267890.11:ENST00000567840.5:ENST00000567274.5:ENST00000564431.5:ENST00000562880.5:ENST00000566931.1	protein_coding	protein_coding	protein_coding	protein_coding	4	45	2	1.78011	2.191535	2.60296	0.0356367	0.0267851	0.151629	0.123349
chr4	70977238	70977337	1971259	0	+	0.313131	(0.28,0.32]	chr4	197601	6	INTRON	INTRON	MOB1B	ENSG00000173542.9	ENST00000309395.7:ENST00000396051.2:ENST00000511449.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	95	2	1.84658	2.19153	2.53648	0.0128582	0.00925866	0.0990564	0.0817766
chr11	808332	808428	4889956	0	-	0.541667	(0.515,0.57]	chr11	457942	19	INTRON	INTRON	PIDD1	ENSG00000177595.19	ENST00000534525.5:ENST00000534649.2:ENST00000530911.1	protein_coding	retained_intron	protein_coding	retained_intron:nonsense_mediated_decay:processed_transcript	3	33	2	2.15051	2.19146	2.23241	0.0581268	0.0238113	0.188651	0.118889
chr16	85497290	85497390	6414803	0	+	0.57	(0.515,0.57]	chr16	615465	1380	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	3	33	2	2.15051	2.19146	2.23241	0.0581268	0.0238113	0.188651	0.118889
chr16	81659989	81660087	6407162	0	+	0.397959	(0.378,0.408]	chr16	615069	18	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5:ENST00000398040.8:ENST00000566462.2	protein_coding	protein_coding	protein_coding	protein_coding	5	61	2	2.11194	2.19137	2.2708	0.0292534	0.00646593	0.128055	0.073179
chr17	67122469	67122569	6824568	0	-	0.56	(0.515,0.57]	chr17	674397	1	SS5_PROX	SS5_PROX:INTRON	HELZ	ENSG00000198265.12	ENST00000358691.10:ENST00000579953.5:ENST00000580168.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	51	2	2.01737	2.191355	2.36534	0.0352218	0.00404547	0.137535	0.0578376
chr20	50901716	50901816	7355577	0	-	0.39	(0.378,0.408]	chr20	750083	3	SS5_PROX	SS5_PROX:INTRON	ADNP	ENSG00000101126.18	ENST00000371602.9:ENST00000621696.5:ENST00000673732.1:ENST00000396029.8:ENST00000644386.1:ENST00000396032.8:ENST00000349014.8:ENST00000645081.1:ENST00000642364.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	45	2	1.59317	2.191315	2.78946	0.0603812	0.0158859	0.19151	0.101453
chr19	23785245	23785344	7042656	0	+	0.373737	(0.35,0.378]	chr19	702220	13	EXON_LNCRNA	EXON_LNCRNA:INTRON	RPSAP58	ENSG00000288920.1	ENST00000471224.5:ENST00000692590.1:ENST00000475499.2:ENST00000686829.1:ENST00000689525.1:ENST00000691397.1:ENST00000688405.1:ENST00000692739.1:ENST00000687994.1:ENST00000484897.4:ENST00000685013.1:ENST00000685490.1:ENST00000462186.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	54	2	1.4414	2.191255	2.94111	0.0629423	0.0104563	0.196658	0.0855102
chr17	1365853	1365952	6699264	0	-	0.515152	(0.476,0.515]	chr17	655546	4	INTRON	INTRON	YWHAE	ENSG00000108953.17	ENST00000264335.13:ENST00000571732.5:ENST00000573026.1:ENST00000573196.5:ENST00000575977.1:ENST00000469398.5:ENST00000486241.1:ENST00000489287.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	72	2	1.69138	2.19121	2.69104	0.0481165	9.94264e-4	0.153019	0.0290397
chr11	62883181	62883264	4799615	0	+	0.433735	(0.408,0.44]	chr11	444828	2	SS5_PROX	SS5_PROX:INTRON	SLC3A2	ENSG00000168003.18	ENST00000680729.1:ENST00000680002.1:ENST00000681467.1:ENST00000377890.6:ENST00000538084.2:ENST00000681569.1:ENST00000680725.1:ENST00000377891.6:ENST00000377889.6:ENST00000681215.1:ENST00000535296.5:ENST00000680631.1:ENST00000544377.2:ENST00000680610.1:ENST00000680297.1:ENST00000680134.1:ENST00000681232.1:ENST00000681657.1:ENST00000541425.6:ENST00000679908.1:ENST00000681563.1:ENST00000338663.12:ENST00000680654.1:ENST00000681107.1:ENST00000541649.2:ENST00000538682.6:ENST00000536981.6:ENST00000539891.6:ENST00000679594.1:ENST00000535768.2:ENST00000537508.6:ENST00000537839.5:ENST00000546253.5:ENST00000457660.6:ENST00000546312.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	100	2	2.18716	2.1912000000000003	2.19524	0.00990486	0.00160247	0.0838372	0.0367961
chr12	69599362	69599449	5165532	0	+	0.402299	(0.378,0.408]	chr12	489279	1	SS3_PROX	SS3_PROX:INTRON	CCT2	ENSG00000166226.13	ENST00000299300.11:ENST00000544368.6:ENST00000550010.5:ENST00000543146.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	70	2	1.67942	2.1912000000000003	2.70298	0.0336706	0.00325723	0.134145	0.0524329
chr9	131158882	131158982	4215968	0	+	0.49	(0.476,0.515]	chr9	386592	1	SS3_PROX	SS3_PROX:INTRON	NUP214	ENSG00000126883.19	ENST00000695497.1:ENST00000695498.1:ENST00000695496.1:ENST00000695495.1:ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000651022.1:ENST00000525980.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	68	2	1.89682	2.191165	2.48551	0.0158424	0.00756632	0.101453	0.0773151
chr10	18546645	18546741	4569657	0	-	0.510417	(0.476,0.515]	chr10	421476	1	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7:ENST00000493816.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	49	2	2.06491	2.191085	2.31726	0.0304733	0.015077	0.143385	0.0994339
chr5	54070532	54070631	2618511	0	-	0.484848	(0.476,0.515]	chr5	248837	224	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	49	2	2.06491	2.191085	2.31726	0.0304733	0.015077	0.143385	0.0994339
chr16	644038	644137	6273191	0	+	0.525253	(0.515,0.57]	chr16	598786	5	INTRON	INTRON	MCRIP2	ENSG00000172366.20	ENST00000611328.4:ENST00000307650.9:ENST00000491999.5:ENST00000629534.2:ENST00000474840.5:ENST00000615744.4:ENST00000620462.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	50	2	1.75372	2.190945	2.62817	0.0386904	0.004048	0.14279	0.0578376
chr17	46940613	46940706	6620892	0	+	0.526882	(0.515,0.57]	chr17	645733	1	UTR3	UTR3:EXON_MRNA:INTRON	GOSR2	ENSG00000108433.17	ENST00000640608.1:ENST00000640792.1:ENST00000640358.1:ENST00000638634.1:ENST00000225567.9:ENST00000573224.2:ENST00000639985.1:ENST00000639199.1:ENST00000639365.1:ENST00000638892.1:ENST00000638838.1:ENST00000638216.1:ENST00000638579.1:ENST00000638189.1:ENST00000639066.1:ENST00000640051.2:ENST00000638697.1:ENST00000640443.1:ENST00000640711.1:ENST00000638219.1:ENST00000639388.1:ENST00000640495.1:ENST00000638374.1:ENST00000640138.1:ENST00000572403.5:ENST00000640068.1:ENST00000640723.1:ENST00000638468.1:ENST00000639713.1:ENST00000640866.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	50	2	1.75372	2.190945	2.62817	0.0386904	0.004048	0.14279	0.0578376
chr19	15309141	15309241	7147172	0	-	0.54	(0.515,0.57]	chr19	721965	288	INTRON	INTRON	BRD4	ENSG00000141867.19	ENST00000679869.1:ENST00000360016.9:ENST00000594841.5:ENST00000597315.5:ENST00000601941.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	48	2	1.54678	2.1908950000000003	2.83501	0.0324987	0.0117686	0.145164	0.0894475
chr5	72219893	72219992	2639778	0	-	0.424242	(0.408,0.44]	chr5	250886	51	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	MRPS27	ENSG00000113048.18	ENST00000694990.1:ENST00000694989.1:ENST00000522042.2:ENST00000694988.1:ENST00000261413.10:ENST00000513900.6:ENST00000695403.1:ENST00000523654.6:ENST00000694998.1:ENST00000694997.1:ENST00000695298.1:ENST00000694996.1:ENST00000694995.1:ENST00000519143.6:ENST00000694994.1:ENST00000695297.1:ENST00000695296.1:ENST00000694993.1:ENST00000694992.1:ENST00000694991.1:ENST00000694999.1:ENST00000457646.9:ENST00000515226.5:ENST00000695404.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	113	2	1.58663	2.190865	2.7951	0.0138313	8.18693e-4	0.10247	0.0264086
chr22	23201750	23201850	7483419	0	+	0.55	(0.515,0.57]	chr22	763541	20	INTRON	INTRON	BCR	ENSG00000186716.21	ENST00000479188.5:ENST00000359540.7:ENST00000305877.13:ENST00000463770.5:ENST00000487679.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	51	2	1.7492	2.19085	2.6325	0.0382504	0.00439001	0.15832	0.0585064
chrX	3610426	3610524	7745702	0	-	0.479592	(0.476,0.515]	chrX	792990	11	INTRON	INTRON	PRKX	ENSG00000183943.6	ENST00000262848.6:ENST00000462736.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	70	2	1.93059	2.19083	2.45107	0.023762	0.00301722	0.118822	0.0507519
chr1	150265854	150265946	550846	0	-	0.402174	(0.378,0.408]	chr1	64718	6	UTR3	UTR3:EXON_MRNA	APH1A	ENSG00000117362.13	ENST00000414276.6:ENST00000369109.8:ENST00000360244.8	protein_coding	protein_coding	protein_coding	protein_coding	11	130	2	2.0331	2.1908250000000002	2.34855	0.00456292	0.00119031	0.0595107	0.0316639
chr2	32292262	32292348	730528	0	+	0.406977	(0.378,0.408]	chr2	84245	2	CDS	CDS:EXON_MRNA:INTRON	YIPF4	ENSG00000119820.11	ENST00000238831.9:ENST00000437765.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	52	2	1.71374	2.190795	2.66785	0.0274158	0.0224639	0.136498	0.11692
chr3	47154635	47154735	1681511	0	-	0.39	(0.378,0.408]	chr3	171624	276	INTRON	INTRON	SETD2	ENSG00000181555.22	ENST00000691544.1:ENST00000638947.2:ENST00000409792.4:ENST00000412450.1	protein_coding	protein_coding	protein_coding	protein_coding	5	52	2	1.71374	2.190795	2.66785	0.0274158	0.0224639	0.136498	0.11692
chr7	10742897	10742997	3484209	0	-	0.35	(0.32,0.35]	chr7	325772	1810	INTRON	INTRON	MGC4859	ENSG00000283117.1	ENST00000634803.1	lncRNA	lncRNA	lncRNA	lncRNA	5	70	2	1.94202	2.1907900000000002	2.43956	0.0486128	0.00352597	0.153946	0.0546236
chr4	98891745	98891832	2208144	0	-	0.229885	[0,0.28]	chr4	216165	3	SS3_PROX	SS3_PROX:INTRON	EIF4E	ENSG00000151247.13	ENST00000450253.7:ENST00000280892.10:ENST00000515638.5:ENST00000504432.5:ENST00000511644.5:ENST00000505992.1:ENST00000507665.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	71	2	1.85666	2.190775	2.52489	0.0660997	0.0084136	0.181924	0.082518
chr11	5434889	5434989	4897569	0	-	0.39	(0.378,0.408]	chr11	459189	34	INTRON	INTRON	HBG2:ENSG00000239920:HBE1:OR51B5	ENSG00000196565.15:ENSG00000239920.2:ENSG00000213931.7:ENSG00000167355.8	ENST00000380252.6:ENST00000380259.7:ENST00000292896.3:ENST00000380237.5:ENST00000420726.6:ENST00000420465.6:ENST00000415970.6:ENST00000418729.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:nonsense_mediated_decay:processed_transcript	13	150	2	1.84341	2.19077	2.53813	0.00456713	6.83968e-4	0.0622215	0.0239468
chr4	2618875	2618975	1913341	0	+	0.5	(0.476,0.515]	chr4	191983	222	INTRON	INTRON	RNF4:FAM193A	ENSG00000063978.16:ENSG00000125386.16	ENST00000508235.1:ENST00000637812.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	70	2	2.17347	2.19068	2.20789	0.010447	0.00820497	0.0855102	0.081115
chr15	40181628	40181727	6001456	0	+	0.363636	(0.35,0.378]	chr15	570603	46	INTRON	INTRON	BUB1B	ENSG00000156970.13	ENST00000412359.7:ENST00000287598.11	protein_coding	protein_coding	protein_coding	protein_coding	4	53	2	1.93432	2.190665	2.44701	0.0481438	0.00900997	0.153019	0.0851009
chr6	140222862	140222962	2968684	0	+	0.36	(0.35,0.378]	chr6	279015	738	INTRON	INTRON	ENSG00000288714	ENSG00000288714.1	ENST00000683950.1	lncRNA	lncRNA	lncRNA	lncRNA	4	53	2	1.93432	2.190665	2.44701	0.0481438	0.00900997	0.153019	0.0851009
chr6	10897316	10897413	2811846	0	+	0.402062	(0.378,0.408]	chr6	264556	28	INTRON	INTRON	SYCP2L	ENSG00000153157.13	ENST00000341041.8:ENST00000283141.11:ENST00000543878.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	134	2	1.85968	2.19054	2.5214	0.0075228099999999996	7.42685e-4	0.0773151	0.0250442
chr4	119440559	119440658	2230563	0	-	0.353535	(0.35,0.378]	chr4	218509	1	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GTF2IP12	ENSG00000283050.3	ENST00000651444.1:ENST00000634317.1:ENST00000456547.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	4	53	2	2.09331	2.190505	2.2877	0.0315717	0.0155765	0.13151	0.109411
chr5	32421500	32421599	2599096	0	-	0.373737	(0.35,0.378]	chr5	246966	10	INTRON	INTRON	ZFR	ENSG00000056097.16	ENST00000265069.13:ENST00000505366.1:ENST00000505204.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	53	2	2.09331	2.190505	2.2877	0.0315717	0.0155765	0.13151	0.109411
chr20	36765584	36765682	7337796	0	-	0.540816	(0.515,0.57]	chr20	747668	27	INTRON	INTRON	DSN1	ENSG00000149636.16	ENST00000426836.5:ENST00000373734.8:ENST00000480153.5:ENST00000473615.5:ENST00000373750.9:ENST00000448110.6:ENST00000373740.7:ENST00000447406.1:ENST00000438549.5:ENST00000492703.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	38	2	1.94493	2.19041	2.43589	0.0370871	0.0204583	0.139194	0.122204
chr16	209680	209773	6425990	0	-	0.451613	(0.44,0.476]	chr16	617436	12	EXON_MRNA	EXON_MRNA:INTRON	LUC7L	ENSG00000007392.17	ENST00000337351.8:ENST00000426094.5:ENST00000397783.5:ENST00000629543.2:ENST00000490762.5:ENST00000293872.13:ENST00000464711.5:ENST00000419516.5:ENST00000397780.5:ENST00000418978.5:ENST00000430864.5:ENST00000443357.5:ENST00000494366.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	124	2	2.0592	2.1903449999999998	2.32149	0.00556585	7.97515e-4	0.0648867	0.0258804
chr16	23916040	23916140	6324561	0	+	0.42	(0.408,0.44]	chr16	605701	223	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000498739.1	protein_coding	protein_coding	protein_coding	protein_coding	10	106	2	1.65739	2.19031	2.72323	0.012928	0.00114246	0.0990564	0.0307966
chr12	110294901	110295000	5226236	0	+	0.50505	(0.476,0.515]	chr12	495240	24	INTRON	INTRON	ATP2A2	ENSG00000174437.18	ENST00000552636.2:ENST00000308664.10:ENST00000539276.7:ENST00000377685.9:ENST00000548169.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	43	2	1.68092	2.190295	2.69967	0.0474026	0.0195838	0.169265	0.109483
chr4	2498181	2498275	1912121	0	+	0.5	(0.476,0.515]	chr4	191939	7	INTRON	INTRON	RNF4	ENSG00000063978.16	ENST00000504224.5:ENST00000541204.5:ENST00000502316.5:ENST00000509388.5:ENST00000507247.5:ENST00000314289.13:ENST00000511843.5:ENST00000509258.5:ENST00000513284.5:ENST00000513578.5:ENST00000511859.5:ENST00000513643.5:ENST00000506706.5:ENST00000511600.5:ENST00000513450.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	43	2	1.68092	2.190295	2.69967	0.0474026	0.0195838	0.169265	0.109483
chr15	44662594	44662692	6164772	0	-	0.428571	(0.408,0.44]	chr15	587446	16	INTRON	INTRON	SPG11	ENSG00000104133.16	ENST00000684235.1:ENST00000261866.12:ENST00000559511.6:ENST00000682065.1:ENST00000682669.1:ENST00000683496.1:ENST00000682460.1:ENST00000682495.1:ENST00000684038.1:ENST00000683186.1:ENST00000683734.1:ENST00000535302.6:ENST00000427534.6:ENST00000558319.5:ENST00000684676.1:ENST00000682788.1:ENST00000683121.1:ENST00000682915.1:ENST00000683255.1:ENST00000683573.1:ENST00000682877.1:ENST00000559193.5:ENST00000684490.1:ENST00000682410.1:ENST00000682648.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	105	2	2.15238	2.1902850000000003	2.22819	0.00382586	0.00373083	0.0561984	0.0542786
chr7	73158239	73158339	3331041	0	+	0.46	(0.44,0.476]	chr7	309730	25	INTRON	INTRON	GTF2IP4	ENSG00000233369.7	ENST00000544802.5	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	4	45	2	2.08211	2.190265	2.29842	0.0552483	0.0130715	0.165463	0.0996047
chr16	345647	345747	6426786	0	-	0.41	(0.408,0.44]	chr16	617501	1	SS5_PROX	SS5_PROX:INTRON	AXIN1	ENSG00000103126.15	ENST00000262320.8:ENST00000461023.5:ENST00000354866.7:ENST00000481769.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	49	2	1.88062	2.190225	2.49983	0.0534548	0.00713527	0.162935	0.0756118
chr19	2168552	2168651	6996215	0	+	0.424242	(0.408,0.44]	chr19	693417	39	INTRON	INTRON	DOT1L	ENSG00000104885.19	ENST00000398665.8:ENST00000686010.1:ENST00000452696.5:ENST00000478937.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	60	2	2.04611	2.19021	2.33431	0.016628	0.0129219	0.102621	0.0990564
chr8	123443517	123443615	3851659	0	+	0.479592	(0.476,0.515]	chr8	354880	14	INTRON	INTRON	NTAQ1	ENSG00000156795.8	ENST00000524254.5:ENST00000650311.1:ENST00000523551.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	51	2	1.8388	2.190185	2.54157	0.0564473	0.00697457	0.184423	0.0718189
chr9	112314577	112314676	4317770	0	-	0.545455	(0.515,0.57]	chr9	397079	163	INTRON	INTRON	PTBP3	ENSG00000119314.16	ENST00000334318.10:ENST00000458258.5:ENST00000374257.6:ENST00000374255.6:ENST00000343327.6:ENST00000487997.1:ENST00000210227.4:ENST00000450374.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	57	2	1.94248	2.190155	2.43783	0.0115668	0.00916404	0.0962115	0.0812949
chr1	164594423	164594523	240286	0	+	0.52	(0.515,0.57]	chr1	28961	36	INTRON	INTRON	PBX1	ENSG00000185630.19	ENST00000420696.7:ENST00000340699.7:ENST00000627490.2:ENST00000559240.5:ENST00000367897.5:ENST00000498497.2:ENST00000559578.1:ENST00000560469.5:ENST00000496120.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	27	244	2	2.16891	2.19014	2.21137	0.0012568	5.40407e-5	0.0323608	0.00602435
chr1	66931191	66931289	139498	0	+	0.377551	(0.35,0.378]	chr1	15642	4	INTRON	INTRON	MIER1	ENSG00000198160.15	ENST00000355977.10:ENST00000371018.7:ENST00000357692.6:ENST00000371016.5:ENST00000371014.5:ENST00000371012.6:ENST00000401041.6:ENST00000355356.3:ENST00000401042.7	protein_coding	protein_coding	protein_coding	protein_coding	6	76	2	2.04224	2.19008	2.33792	0.0363073	0.0024225	0.138959	0.0454587
chr1	65284393	65284493	135837	0	+	0.46	(0.44,0.476]	chr1	15346	191	INTRON	INTRON	DNAJC6	ENSG00000116675.16	ENST00000463018.5:ENST00000494710.6:ENST00000263441.11:ENST00000395325.7:ENST00000483402.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	45	2	1.71574	2.190035	2.66433	0.045256	0.0194358	0.149888	0.119831
chr16	22467388	22467488	6322248	0	+	0.42	(0.408,0.44]	chr16	605343	1	SS5_PROX	SS5_PROX:INTRON	SMG1P1	ENSG00000237296.10	ENST00000381231.5:ENST00000309865.11:ENST00000687936.1:ENST00000691423.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	4	49	2	2.16746	2.18992	2.21238	0.024436	0.0193525	0.12011	0.119831
chr21	38081752	38081852	7463699	0	-	0.56	(0.515,0.57]	chr21	760281	266	INTRON	INTRON	DSCR4	ENSG00000184029.9	ENST00000398948.5:ENST00000328264.7	lncRNA	lncRNA	lncRNA	lncRNA	8	76	2	2.01561	2.189805	2.364	0.00518674	0.00447856	0.0654085	0.0593175
chr14	24166332	24166410	5658956	0	+	0.371795	(0.35,0.378]	chr14	539945	2	UTR3	UTR3:EXON_MRNA	IRF9	ENSG00000213928.9	ENST00000396864.8:ENST00000557894.5:ENST00000560311.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	60	2	1.34146	2.1898	3.03814	0.0634598	0.00767003	0.19806000000000001	0.075364
chr4	126674871	126674971	2237458	0	-	0.37	(0.35,0.378]	chr4	219023	2094	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	6	60	2	1.34146	2.1898	3.03814	0.0634598	0.00767003	0.19806000000000001	0.075364
chr19	52089402	52089502	7205805	0	-	0.48	(0.476,0.515]	chr19	731309	4	SS3_PROX	SS3_PROX:INTRON	ZNF432:ZNF841	ENSG00000256087.7:ENSG00000197608.12	ENST00000598446.1:ENST00000594440.6:ENST00000426391.6:ENST00000594295.5:ENST00000599430.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	58	2	1.96833	2.18977	2.41121	0.0195007	0.0110342	0.119967	0.0873897
chr10	46805815	46805914	4430916	0	+	0.474747	(0.44,0.476]	chr10	408546	35	INTRON	INTRON	BMS1P1	ENSG00000204177.11	ENST00000580094.5:ENST00000688259.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	5	59	2	1.98938	2.189705	2.39003	0.0198602	0.0106488	0.109608	0.0915714
chr21	42844077	42844176	7467546	0	-	0.444444	(0.44,0.476]	chr21	760925	4	INTRON	INTRON	WDR4	ENSG00000160193.12	ENST00000330317.6	protein_coding	protein_coding	protein_coding	protein_coding	8	91	2	1.70763	2.18966	2.67169	0.0190437	0.00140924	0.118994	0.0340865
chr17	32457170	32457270	6598475	0	+	0.32	(0.28,0.32]	chr17	641982	19	INTRON	INTRON	PSMD11	ENSG00000108671.11	ENST00000578213.5:ENST00000649012.1:ENST00000457654.6:ENST00000578397.5:ENST00000579451.1:ENST00000261712.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	46	2	2.1895	2.189625	2.18975	0.0776042	0.0227063	0.196285	0.124921
chr2	171097394	171097493	1263462	0	-	0.282828	(0.28,0.32]	chr2	133913	57	INTRON	INTRON	TLK1	ENSG00000198586.14	ENST00000431350.7:ENST00000360843.7:ENST00000359766.7:ENST00000521943.5:ENST00000409443.6:ENST00000413010.5:ENST00000470340.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	46	2	2.1895	2.189625	2.18975	0.0776042	0.0227063	0.196285	0.124921
chr17	42520226	42520326	6611938	0	+	0.54	(0.515,0.57]	chr17	644201	24	EXON_MRNA	EXON_MRNA:INTRON	ATP6V0A1	ENSG00000033627.17	ENST00000393829.6:ENST00000343619.9:ENST00000537728.5:ENST00000264649.10:ENST00000585525.5:ENST00000544137.5:ENST00000586201.5:ENST00000588138.1:ENST00000585828.5:ENST00000588806.1:ENST00000592831.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	58	2	1.86362	2.189615	2.51561	0.0164561	0.00635044	0.102235	0.0723103
chr1	145996422	145996500	541122	0	-	0.358974	(0.35,0.378]	chr1	63491	3	UTR5	UTR5:EXON_MRNA	TXNIP	ENSG00000265972.6	ENST00000582401.6	protein_coding	protein_coding	protein_coding	protein_coding	57	706	2	1.85252	2.189565	2.52661	0.00156174	3.95269e-6	0.0360428	0.00131614
chr6	169699753	169699853	3267107	0	-	0.47	(0.44,0.476]	chr6	303259	43	INTRON	INTRON	WDR27	ENSG00000184465.16	ENST00000448612.6:ENST00000648472.1:ENST00000423258.5:ENST00000647790.1:ENST00000647873.1:ENST00000649303.1:ENST00000647889.1:ENST00000648017.1:ENST00000650296.1:ENST00000546953.1:ENST00000649806.1:ENST00000474018.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	95	2	1.96805	2.189495	2.41094	0.0109533	0.00205841	0.0925675	0.0409869
chr1	246219724	246219824	677832	0	-	0.6	(0.57,1]	chr1	79733	261	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000453676.5:ENST00000462422.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	35	2	1.64415	2.189445	2.73474	0.0342575	0.00241874	0.135558	0.0454275
chr1	23760269	23760368	44757	0	+	0.424242	(0.408,0.44]	chr1	5438	8	UTR3	UTR3:EXON_MRNA	ELOA	ENSG00000011007.13	ENST00000418390.7:ENST00000609199.2:ENST00000613537.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	81	2	2.04842	2.189405	2.33039	0.00797555	0.00598147	0.0798772	0.0674604
chr6	170551236	170551336	3267659	0	-	0.44	(0.408,0.44]	chr6	303384	9	INTRON	INTRON	PSMB1	ENSG00000008018.9	ENST00000262193.7	protein_coding	protein_coding	protein_coding	protein_coding	7	81	2	2.04842	2.189405	2.33039	0.00797555	0.00598147	0.0798772	0.0674604
chr8	26324093	26324193	3716422	0	+	0.43	(0.408,0.44]	chr8	345372	191	INTRON	INTRON	PPP2R2A	ENSG00000221914.11	ENST00000380737.8:ENST00000520329.5:ENST00000518254.5:ENST00000524169.5:ENST00000518397.5:ENST00000522535.5:ENST00000665949.1:ENST00000522150.5:ENST00000523473.5:ENST00000521095.5:ENST00000660435.1:ENST00000523925.5:ENST00000524099.5:ENST00000315985.7:ENST00000519636.5:ENST00000522482.5:ENST00000521557.5:ENST00000519439.5:ENST00000521484.5:ENST00000523964.5:ENST00000667651.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	85	2	2.06309	2.1893700000000003	2.31565	0.0154718	0.00294584	0.100909	0.0497776
chr11	32595965	32596047	4764600	0	+	0.292683	(0.28,0.32]	chr11	440583	1	CDS	CDS:UTR3:EXON_MRNA	EIF3M	ENSG00000149100.13	ENST00000531921.5:ENST00000531120.6:ENST00000525782.5:ENST00000524896.5:ENST00000323213.9:ENST00000524711.5:ENST00000526267.1:ENST00000525054.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	172	2	2.15737	2.1893599999999998	2.22135	0.00527944	0.00126877	0.0635667	0.0330508
chr11	74238459	74238555	4827204	0	+	0.427083	(0.408,0.44]	chr11	450495	8	EXON_MRNA	EXON_MRNA:INTRON	PPME1	ENSG00000214517.10	ENST00000328257.13:ENST00000398427.6:ENST00000543525.3:ENST00000535205.5:ENST00000541340.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	67	2	1.8865	2.18934	2.49218	0.0148842	0.00855168	0.107116	0.0780217
chr12	132794250	132794348	5449858	0	-	0.469388	(0.44,0.476]	chr12	522042	26	INTRON	INTRON	GOLGA3	ENSG00000090615.16	ENST00000204726.9:ENST00000450791.8:ENST00000693666.1:ENST00000688114.1:ENST00000687190.1:ENST00000690511.1:ENST00000685283.1:ENST00000691696.1:ENST00000691636.1:ENST00000690897.1:ENST00000690465.1:ENST00000456883.7:ENST00000692253.1:ENST00000687502.1:ENST00000688772.1:ENST00000687479.1:ENST00000690709.1:ENST00000545875.4:ENST00000688251.1:ENST00000690573.1:ENST00000685195.1:ENST00000686425.1:ENST00000693437.1:ENST00000692831.1:ENST00000688068.1:ENST00000692951.1:ENST00000689441.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	129	2	1.72944	2.18928	2.64912	0.0196145	1.22139e-4	0.109486	0.00944529
chr17	47146855	47146954	6788952	0	-	0.454545	(0.44,0.476]	chr17	669573	25	INTRON	INTRON	CDC27	ENSG00000004897.12	ENST00000066544.8:ENST00000531206.5:ENST00000533415.5:ENST00000527547.5:ENST00000526866.5:ENST00000525495.6:ENST00000574304.5:ENST00000575830.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	19	210	2	1.97846	2.18919	2.39992	0.00168489	2.24478e-4	0.0370386	0.0132046
chr19	15313040	15313140	7147211	0	-	0.55	(0.515,0.57]	chr19	721965	327	INTRON	INTRON	BRD4	ENSG00000141867.19	ENST00000679869.1:ENST00000360016.9:ENST00000594841.5:ENST00000597315.5:ENST00000601941.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	84	2	2.09303	2.189185	2.28534	0.0061678	0.00230048	0.067653	0.0439974
chr12	123597801	123597899	5243142	0	+	0.316327	(0.28,0.32]	chr12	498286	12	UTR3	UTR3:EXON_MRNA	TMED2	ENSG00000086598.11	ENST00000262225.8	protein_coding	protein_coding	protein_coding	protein_coding	17	225	2	1.9371	2.189165	2.44123	0.00178423	0.00165244	0.0392749	0.0369207
chr20	62160555	62160650	7297655	0	+	0.368421	(0.35,0.378]	chr20	742265	2	INTRON	INTRON	SS18L1	ENSG00000184402.15	ENST00000331758.8:ENST00000450482.5	protein_coding	protein_coding	protein_coding	protein_coding	9	112	2	1.9021	2.189165	2.47623	0.011433	0.0012627	0.0886847	0.0329641
chr9	132910109	132910199	4368507	0	-	0.466667	(0.44,0.476]	chr9	401766	5	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	TSC1	ENSG00000165699.15	ENST00000298552.9:ENST00000440111.6:ENST00000545250.5:ENST00000644097.1:ENST00000646625.1:ENST00000642627.1:ENST00000647534.1:ENST00000643875.1:ENST00000645901.1:ENST00000642811.1:ENST00000642617.1:ENST00000647279.1:ENST00000643583.1:ENST00000644319.1:ENST00000644255.1:ENST00000646391.1:ENST00000643072.1:ENST00000647506.1:ENST00000643362.1:ENST00000642344.1:ENST00000642745.1:ENST00000645150.1:ENST00000642646.1:ENST00000493467.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	72	2	1.9039	2.189135	2.47437	0.0501498	0.00117531	0.156383	0.0316592
chr1	54345449	54345548	463150	0	-	0.494949	(0.476,0.515]	chr1	55780	97	INTRON	INTRON	SSBP3	ENSG00000157216.16	ENST00000610401.5:ENST00000357475.9:ENST00000371319.8:ENST00000417664.7:ENST00000533946.6:ENST00000326956.12:ENST00000371320.8:ENST00000525990.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	36	2	1.72558	2.18913	2.65268	0.0767648	0.0201975	0.196164	0.121243
chr17	81585804	81585903	6849077	0	-	0.50505	(0.476,0.515]	chr17	678158	134	INTRON	INTRON	NPLOC4	ENSG00000182446.14	ENST00000331134.11:ENST00000374747.9:ENST00000574897.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	36	2	1.72558	2.18913	2.65268	0.0767648	0.0201975	0.196164	0.121243
chr20	31559210	31559310	7253438	0	+	0.5	(0.476,0.515]	chr20	736660	2	SS3_PROX	SS3_PROX:INTRON	HM13	ENSG00000101294.18	ENST00000335574.10:ENST00000674240.1:ENST00000340852.9:ENST00000398174.9:ENST00000649820.1:ENST00000466766.2:ENST00000650367.1:ENST00000344042.5:ENST00000649374.1:ENST00000469126.5:ENST00000492709.5:ENST00000469097.5:ENST00000487964.5:ENST00000649583.1:ENST00000460389.5:ENST00000494153.5:ENST00000483310.5:ENST00000472128.5:ENST00000474466.5:ENST00000468559.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	36	2	1.72558	2.18913	2.65268	0.0767648	0.0201975	0.196164	0.121243
chr16	69700908	69701006	6381383	0	+	0.438776	(0.408,0.44]	chr16	613255	47	UTR3	UTR3:EXON_MRNA:INTRON	NFAT5	ENSG00000102908.22	ENST00000426654.6:ENST00000349945.7:ENST00000354436.6:ENST00000627621.3:ENST00000650987.1:ENST00000393742.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	22	245	2	2.13006	2.189075	2.24809	5.15741e-4	3.98443e-4	0.0208667	0.0179401
chr7	72891410	72891510	3329912	0	+	0.52	(0.515,0.57]	chr7	309564	3	SS5_PROX	SS5_PROX:INTRON	POM121	ENSG00000196313.13	ENST00000627934.3:ENST00000395270.5	protein_coding	protein_coding	protein_coding	protein_coding	11	108	2	1.61321	2.189075	2.76494	0.0202182	9.09959e-5	0.109913	0.00797978
chr17	62060375	62060474	6810832	0	-	0.454545	(0.44,0.476]	chr17	672952	73	INTRON	INTRON	MED13	ENSG00000108510.10	ENST00000397786.7	protein_coding	protein_coding	protein_coding	protein_coding	5	50	2	1.70242	2.18907	2.67572	0.0282713	0.0212064	0.137721	0.113017
chr1	95122883	95122983	166621	0	+	0.24	[0,0.28]	chr1	18098	13	INTRON	INTRON	TLCD4:TLCD4-RWDD3:ENSG00000231992	ENSG00000152078.10:ENSG00000271092.5:ENSG00000231992.1	ENST00000370203.9:ENST00000456991.5:ENST00000604534.5:ENST00000455656.1:ENST00000434207.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	3	52	2	2.10688	2.1890349999999996	2.27119	0.070351	0.0307985	0.184298	0.143385
chr3	15799280	15799380	1623838	0	-	0.27	[0,0.28]	chr3	168027	12	INTRON	INTRON	ANKRD28	ENSG00000206560.12	ENST00000399451.6:ENST00000412318.5:ENST00000439830.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	52	2	2.10688	2.1890349999999996	2.27119	0.070351	0.0307985	0.184298	0.143385
chr7	127371419	127371517	3634028	0	-	0.234694	[0,0.28]	chr7	337750	15	UTR3	UTR3:EXON_MRNA:INTRON	ZNF800	ENSG00000048405.11	ENST00000485577.1:ENST00000265827.8:ENST00000393313.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	52	2	2.10688	2.1890349999999996	2.27119	0.070351	0.0307985	0.184298	0.143385
chr16	88772726	88772826	6540097	0	-	0.51	(0.476,0.515]	chr16	633998	229	INTRON	INTRON	PIEZO1	ENSG00000103335.22	ENST00000301015.14	protein_coding	protein_coding	protein_coding	protein_coding	5	58	2	1.79187	2.18901	2.58615	0.0362169	0.00515536	0.138959	0.0650394
chr7	87160358	87160457	3345702	0	+	0.535354	(0.515,0.57]	chr7	311631	45	INTRON	INTRON	DMTF1	ENSG00000135164.19	ENST00000413276.6:ENST00000447863.5:ENST00000579677.5:ENST00000425406.5:ENST00000446796.6:ENST00000420131.5:ENST00000414630.6:ENST00000547146.6:ENST00000579850.5:ENST00000453049.5:ENST00000331242.12:ENST00000430405.7:ENST00000449088.7:ENST00000448598.5:ENST00000428819.5:ENST00000432937.6:ENST00000584619.5:ENST00000432366.6:ENST00000423590.6:ENST00000394703.9:ENST00000584457.5:ENST00000580710.5:ENST00000579592.5:ENST00000434534.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	19	177	2	2.13986	2.1889700000000003	2.23808	6.18968e-4	3.69213e-4	0.0229151	0.0172871
chr3	196074658	196074749	1897481	0	-	0.483516	(0.476,0.515]	chr3	189978	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TFRC	ENSG00000072274.13	ENST00000420415.5:ENST00000360110.9:ENST00000392396.7:ENST00000421258.1:ENST00000464011.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	56	2	1.61324	2.18892	2.7646	0.026684	0.0162075	0.134419	0.101453
chr10	101794498	101794595	4680728	0	-	0.237113	[0,0.28]	chr10	431970	1	INTRON	INTRON	OGA	ENSG00000198408.14	ENST00000439817.5:ENST00000361464.8:ENST00000357797.9:ENST00000482611.5:ENST00000479811.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	17	222	2	1.60978	2.18887	2.76796	0.00821838	0.00192631	0.0812393	0.0397399
chr17	39385981	39386080	6766496	0	-	0.464646	(0.44,0.476]	chr17	665497	424	INTRON	INTRON	FBXL20	ENSG00000108306.13	ENST00000264658.11:ENST00000583610.5:ENST00000394294.7:ENST00000577399.5:ENST00000647139.1	protein_coding	protein_coding	protein_coding	protein_coding	5	51	2	1.84134	2.18887	2.5364	0.0309324	0.0175428	0.13151	0.11319
chr3	172057132	172057232	1559719	0	+	0.46	(0.44,0.476]	chr3	161527	98	INTRON	INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000421757.5:ENST00000469491.5:ENST00000336824.8:ENST00000423424.5:ENST00000416957.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	51	2	1.84134	2.18887	2.5364	0.0309324	0.0175428	0.13151	0.11319
chr8	23570145	23570243	3715515	0	+	0.469388	(0.44,0.476]	chr8	345238	13	INTRON	INTRON	SLC25A37	ENSG00000147454.14	ENST00000519973.6:ENST00000290075.10:ENST00000417331.6:ENST00000518881.5:ENST00000523930.1:ENST00000523883.5:ENST00000522164.5:ENST00000521637.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	52	563	2	2.13088	2.18881	2.24674	2.29971e-4	2.97444e-5	0.013917	0.00433808
chr6	17679151	17679250	3065935	0	-	0.343434	(0.32,0.35]	chr6	284866	30	INTRON	INTRON	NUP153	ENSG00000124789.12	ENST00000613258.4:ENST00000537253.5:ENST00000262077.3	protein_coding	protein_coding	protein_coding	protein_coding	6	78	2	1.95408	2.1888	2.42352	0.0124054	0.0122807	0.0973643	0.091087
chr12	108685580	108685680	5406315	0	-	0.33	(0.32,0.35]	chr12	516011	68	INTRON	INTRON	CORO1C	ENSG00000110880.11	ENST00000261401.8:ENST00000420959.6:ENST00000541050.5:ENST00000549384.5:ENST00000421578.6:ENST00000550542.5:ENST00000549772.5:ENST00000552871.5:ENST00000547294.5:ENST00000550032.5:ENST00000551550.5:ENST00000546571.5:ENST00000551044.1:ENST00000547170.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	59	2	1.80487	2.18875	2.57263	0.0312297	0.0210603	0.13151	0.122559
chr1	39173711	39173811	75575	0	+	0.45	(0.44,0.476]	chr1	9698	143	INTRON	INTRON	MACF1	ENSG00000127603.32	ENST00000361689.7:ENST00000689911.1:ENST00000567887.5:ENST00000372915.8:ENST00000472385.2:ENST00000693209.1:ENST00000524432.5:ENST00000467673.5:ENST00000688212.1:ENST00000672812.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	38	2	2.08277	2.18851	2.29425	0.0518406	0.0309998	0.176696	0.13151
chr2	113893561	113893660	854278	0	+	0.444444	(0.44,0.476]	chr2	95895	24	INTRON	INTRON	ACTR3	ENSG00000115091.12	ENST00000443297.5:ENST00000263238.7:ENST00000415792.5:ENST00000446821.5:ENST00000535589.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	70	2	2.07016	2.1884449999999998	2.30673	0.0151815	0.0055175	0.0994339	0.0672816
chr11	78355638	78355738	4999765	0	-	0.37	(0.35,0.378]	chr11	472466	139	INTRON	INTRON	GAB2	ENSG00000033327.13	ENST00000361507.5:ENST00000526030.1:ENST00000528886.5:ENST00000530915.1:ENST00000534823.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	89	2	1.81613	2.18842	2.56071	0.00932362	0.00725312	0.085606	0.072984
chr6	104966575	104966675	2929946	0	+	0.46	(0.44,0.476]	chr6	276110	79	INTRON	INTRON	LIN28B	ENSG00000187772.8	ENST00000635857.1:ENST00000637759.1:ENST00000345080.5	protein_coding	protein_coding	protein_coding	protein_coding	7	75	2	1.4962	2.18841	2.88062	0.0392301	0.001878	0.161534	0.039073
chr10	42812303	42812403	4428330	0	+	0.47	(0.44,0.476]	chr10	408133	97	INTRON	INTRON	BMS1	ENSG00000165733.8	ENST00000374518.6	protein_coding	protein_coding	protein_coding	protein_coding	6	55	2	1.40212	2.1883150000000002	2.97451	0.0524678	0.00853825	0.178047	0.0780043
chr12	112041738	112041838	5414728	0	-	0.3	(0.28,0.32]	chr12	517134	3	SS5_PROX	SS5_PROX:INTRON	NAA25	ENSG00000111300.10	ENST00000261745.9:ENST00000552527.5:ENST00000549711.5:ENST00000550701.5:ENST00000551858.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	72	2	1.69688	2.188315	2.67975	0.0252505	0.0219684	0.123836	0.12011
chr12	118018771	118018871	5234128	0	+	0.35	(0.32,0.35]	chr12	496504	3	SS3_PROX	SS3_PROX:INTRON	RFC5	ENSG00000111445.14	ENST00000449641.6:ENST00000537315.5:ENST00000454402.7:ENST00000420967.5:ENST00000484086.6:ENST00000392542.6:ENST00000535092.1	protein_coding	protein_coding	protein_coding	protein_coding	8	108	2	1.91908	2.1883	2.45752	0.0169079	0.00149527	0.103859	0.0356978
chr22	20918545	20918645	7480528	0	+	0.41	(0.408,0.44]	chr22	763089	3	SS5_PROX	SS5_PROX:INTRON	CRKL	ENSG00000099942.13	ENST00000354336.8:ENST00000411769.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	112	2	2.11401	2.188265	2.26252	0.00399285	0.00230448	0.0550622	0.0440636
chr19	9651853	9651953	7133266	0	-	0.48	(0.476,0.515]	chr19	718879	102	UTR3	UTR3:EXON_MRNA	ZNF562	ENSG00000171466.10	ENST00000453372.7:ENST00000293648.8	protein_coding	protein_coding	protein_coding	protein_coding	9	100	2	1.48441	2.188245	2.89208	0.0315624	4.83014e-4	0.144381	0.0203603
chr16	16502218	16502318	6310884	0	+	0.5	(0.476,0.515]	chr16	604098	22	INTRON	INTRON	ENSG00000260126	ENSG00000260126.2	ENST00000567465.2	lncRNA	lncRNA	lncRNA	lncRNA	3	37	2	1.99197	2.188195	2.38442	0.0417472	0.039572	0.161736	0.143072
chr16	85520680	85520780	6415037	0	+	0.51	(0.476,0.515]	chr16	615465	1614	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	3	37	2	1.99197	2.188195	2.38442	0.0417472	0.039572	0.161736	0.143072
chr12	103778481	103778581	5401165	0	-	0.48	(0.476,0.515]	chr12	515208	4	SS3_PROX	SS3_PROX:INTRON	NT5DC3	ENSG00000111696.12	ENST00000447799.5:ENST00000392876.8:ENST00000415849.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	58	2	1.83961	2.18816	2.53671	0.0314489	0.00624027	0.13151	0.0718843
chr3	87827122	87827222	1455356	0	+	0.37	(0.35,0.378]	chr3	153149	46	INTRON	INTRON	HTR1F	ENSG00000179097.7	ENST00000319595.7	protein_coding	protein_coding	protein_coding	protein_coding	4	48	2	1.5118	2.188155	2.86451	0.0789277	0.0109111	0.198963	0.0923273
chr4	94242004	94242103	1997859	0	+	0.373737	(0.35,0.378]	chr4	199423	6	INTRON	INTRON	SMARCAD1	ENSG00000163104.18	ENST00000359052.8:ENST00000457823.6:ENST00000354268.9:ENST00000510105.5:ENST00000394961.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	48	2	1.5118	2.188155	2.86451	0.0789277	0.0109111	0.198963	0.0923273
chr9	131151994	131152094	4215899	0	+	0.3	(0.28,0.32]	chr9	386590	1	SS5_PROX	SS5_PROX:INTRON	NUP214	ENSG00000126883.19	ENST00000695497.1:ENST00000695498.1:ENST00000695496.1:ENST00000695495.1:ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000651022.1:ENST00000525980.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	47	2	1.91611	2.188145	2.46018	0.0539102	0.0375904	0.164153	0.156054
chrX	71420112	71420212	7678786	0	+	0.6	(0.57,1]	chrX	786274	35	INTRON	INTRON	TAF1	ENSG00000147133.17	ENST00000683202.1:ENST00000373790.9:ENST00000423759.6:ENST00000683782.1:ENST00000683668.1:ENST00000276072.9:ENST00000373775.8:ENST00000485087.6:ENST00000437147.8:ENST00000683358.1:ENST00000682124.1:ENST00000461764.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	25	2	2.01216	2.188135	2.36411	0.0408868	0.0163389	0.161534	0.101571
chr1	203823246	203823345	296960	0	+	0.464646	(0.44,0.476]	chr1	34151	42	INTRON	INTRON	ZC3H11A:ZBED6	ENSG00000058673.17:ENSG00000257315.3	ENST00000367210.3:ENST00000453771.5:ENST00000638800.1:ENST00000367214.5:ENST00000639812.1:ENST00000367212.7:ENST00000332127.8:ENST00000550078.2:ENST00000495527.5:ENST00000640465.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	36	2	2.0776	2.1880100000000002	2.29842	0.0552483	0.0292951	0.165463	0.141862
chr1	213079912	213080011	310990	0	+	0.444444	(0.44,0.476]	chr1	35919	17	INTRON	INTRON	RPS6KC1	ENSG00000136643.12	ENST00000615329.4:ENST00000543354.5:ENST00000614059.4:ENST00000543470.5:ENST00000366960.8:ENST00000366959.4:ENST00000490299.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	36	2	2.0776	2.1880100000000002	2.29842	0.0552483	0.0292951	0.165463	0.141862
chr12	119669842	119669926	5234850	0	+	0.47619	(0.44,0.476]	chr12	496679	6	UTR5	UTR5:EXON_MRNA:INTRON	PRKAB1	ENSG00000111725.11	ENST00000541640.5:ENST00000229328.10:ENST00000537400.1:ENST00000630317.1:ENST00000540121.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	36	2	2.0776	2.1880100000000002	2.29842	0.0552483	0.0292951	0.165463	0.141862
chr17	56909649	56909747	6799103	0	-	0.459184	(0.44,0.476]	chr17	671279	7	INTRON	INTRON	TRIM25	ENSG00000121060.19	ENST00000648772.1:ENST00000682766.1:ENST00000316881.9:ENST00000537230.3:ENST00000572021.6:ENST00000574997.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	36	2	2.0776	2.1880100000000002	2.29842	0.0552483	0.0292951	0.165463	0.141862
chr3	32742764	32742863	1393704	0	+	0.323232	(0.32,0.35]	chr3	145926	49	INTRON	INTRON	CNOT10	ENSG00000182973.20	ENST00000331889.10:ENST00000328834.10:ENST00000435630.5:ENST00000454516.7:ENST00000416457.5:ENST00000430408.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	43	2	1.88909	2.1880100000000002	2.48693	0.0553737	0.0338094	0.165463	0.146709
chr1	29044161	29044260	60265	0	+	0.383838	(0.378,0.408]	chr1	7705	28	INTRON	INTRON	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000647918.1:ENST00000646800.1:ENST00000644342.1:ENST00000646189.1:ENST00000482464.6:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000646260.1:ENST00000373798.5:ENST00000644600.1:ENST00000649674.1:ENST00000643173.1:ENST00000343067.9:ENST00000644780.1:ENST00000650265.1:ENST00000648181.1:ENST00000643604.1:ENST00000648891.1:ENST00000373797.2:ENST00000349460.9:ENST00000645184.1:ENST00000645111.1:ENST00000643302.1:ENST00000645999.1:ENST00000642643.1:ENST00000636666.1:ENST00000644848.1:ENST00000644470.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	63	2	1.98727	2.1879999999999997	2.38873	0.0458857	0.00639052	0.149888	0.0726555
chr21	6325874	6325973	7364832	0	+	0.323232	(0.32,0.35]	chr21	751664	14	INTRON	INTRON	ENSG00000278903	ENSG00000278903.4	ENST00000688458.1:ENST00000689306.1:ENST00000692898.1:ENST00000624576.3:ENST00000623738.3:ENST00000692237.1:ENST00000692046.1:ENST00000689354.1:ENST00000624165.1	lncRNA	lncRNA	lncRNA	lncRNA	9	115	2	1.63919	2.18799	2.73679	0.0231117	9.3145e-4	0.118148	0.0278746
chr13	39036030	39036125	5576191	0	-	0.368421	(0.35,0.378]	chr13	533093	15	INTRON	INTRON	PROSER1	ENSG00000120685.20	ENST00000352251.8:ENST00000625998.2:ENST00000418503.1:ENST00000602534.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	47	2	1.71046	2.187965	2.66547	0.0441269	0.0233639	0.162255	0.118323
chr18	36168884	36168980	6891841	0	+	0.354167	(0.35,0.378]	chr18	683075	13	INTRON	INTRON	ELP2	ENSG00000134759.14	ENST00000351393.10:ENST00000442325.6:ENST00000358232.11:ENST00000423854.6:ENST00000539560.5:ENST00000350494.10:ENST00000542824.5:ENST00000540766.5:ENST00000545302.5:ENST00000541748.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	48	2	1.97646	2.187925	2.39939	0.0458078	0.0193942	0.149888	0.119831
chr12	68657537	68657625	5161690	0	+	0.488636	(0.476,0.515]	chr12	488632	5	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	RAP1B	ENSG00000127314.18	ENST00000393436.9:ENST00000250559.14:ENST00000425247.6:ENST00000450214.6:ENST00000463493.5:ENST00000537460.5:ENST00000543393.5:ENST00000540209.5:ENST00000378985.7:ENST00000542145.5:ENST00000539091.5:ENST00000543697.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	67	2	1.40757	2.187905	2.96824	0.0707852	9.98194e-4	0.184528	0.0290732
chr1	149859681	149859781	549557	0	-	0.34	(0.32,0.35]	chr1	64518	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	H4C15	ENSG00000270276.3	ENST00000621520.1:ENST00000612061.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	5	80	2	1.81328	2.18782	2.56236	0.0615716	0.002892	0.193423	0.0476886
chr1	201145751	201145835	618927	0	-	0.464286	(0.44,0.476]	chr1	73341	2	SS3_PROX	SS3_PROX:INTRON	TMEM9	ENSG00000116857.17	ENST00000367333.6:ENST00000367334.9:ENST00000367330.6:ENST00000367332.5:ENST00000495205.1:ENST00000485839.6:ENST00000497582.5:ENST00000455367.5:ENST00000414605.2:ENST00000435310.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	44	2	1.55662	2.18779	2.81896	0.0688347	0.0120766	0.184298	0.0962311
chr16	70558504	70558602	6385507	0	+	0.265306	[0,0.28]	chr16	613957	11	INTRON	INTRON	SF3B3	ENSG00000189091.13	ENST00000302516.10	protein_coding	protein_coding	protein_coding	protein_coding	4	63	2	1.88025	2.18776	2.49527	0.0436497	0.029906	0.14882	0.142135
chr20	3940421	3940520	7308650	0	-	0.393939	(0.378,0.408]	chr20	744273	50	INTRON	INTRON	RNF24	ENSG00000101236.17	ENST00000336095.10:ENST00000358395.11:ENST00000432261.6:ENST00000545616.2	protein_coding	protein_coding	protein_coding	protein_coding	3	38	2	2.13703	2.18767	2.23831	0.0797592	0.0179575	0.19979	0.114265
chr19	10364413	10364513	7135747	0	-	0.5	(0.476,0.515]	chr19	719486	4	SS5_PROX	SS5_PROX:INTRON	TYK2	ENSG00000105397.14	ENST00000264818.10:ENST00000525621.6:ENST00000524462.5:ENST00000529370.5:ENST00000525220.1	protein_coding	protein_coding	protein_coding	protein_coding	6	67	2	1.78917	2.18766	2.58615	0.022887	0.00515536	0.118056	0.0650394
chr21	39297822	39297921	7465384	0	-	0.282828	(0.28,0.32]	chr21	760563	15	UTR3	UTR3:EXON_MRNA:INTRON	BRWD1	ENSG00000185658.14	ENST00000333229.6:ENST00000342449.8:ENST00000380800.7:ENST00000341322.4	protein_coding	protein_coding	protein_coding	protein_coding	5	75	2	2.05458	2.18755	2.32052	0.0381508	0.00612675	0.141764	0.0708525
chr10	73061367	73061466	4647486	0	-	0.353535	(0.35,0.378]	chr10	427530	74	INTRON	INTRON	P4HA1	ENSG00000122884.13	ENST00000394890.7:ENST00000307116.6:ENST00000373008.6:ENST00000440381.5:ENST00000263556.3	protein_coding	protein_coding	protein_coding	protein_coding	10	116	2	2.02093	2.187475	2.35402	0.00596483	0.00273111	0.0674604	0.0483033
chr17	50963872	50963972	6795390	0	-	0.31	(0.28,0.32]	chr17	670813	18	UTR3	UTR3:EXON_MRNA	SPAG9	ENSG00000008294.22	ENST00000262013.12	protein_coding	protein_coding	protein_coding	protein_coding	9	112	2	1.68891	2.187465	2.68602	0.0132814	0.0055712	0.100261	0.0649112
chr7	140467603	140467703	3661508	0	-	0.47	(0.44,0.476]	chr7	339916	70	INTRON	INTRON	MKRN1	ENSG00000133606.11	ENST00000255977.7:ENST00000475010.5:ENST00000495305.5:ENST00000474576.5:ENST00000480552.5:ENST00000496169.5:ENST00000443720.6:ENST00000471104.5:ENST00000467513.5:ENST00000494939.1:ENST00000498535.1:ENST00000473444.1:ENST00000475180.5:ENST00000481705.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	97	2	1.89689	2.187465	2.47804	0.00630125	0.00325838	0.0722266	0.0508595
chr1	229321304	229321402	652394	0	-	0.346939	(0.32,0.35]	chr1	77236	4	UTR3	UTR3:EXON_MRNA	CCSAP	ENSG00000154429.11	ENST00000366687.5:ENST00000284617.7	protein_coding	protein_coding	protein_coding	protein_coding	6	78	2	1.98909	2.187455	2.38582	0.0138529	0.0108865	0.0953077	0.0923273
chr1	65352989	65353088	136526	0	+	0.363636	(0.35,0.378]	chr1	15358	69	INTRON	INTRON	DNAJC6	ENSG00000116675.16	ENST00000463018.5:ENST00000494710.6:ENST00000263441.11:ENST00000395325.7:ENST00000483402.1:ENST00000371069.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	39	2	1.9755	2.187445	2.39939	0.0458078	0.0398617	0.161534	0.149888
chr6	36886328	36886428	2854807	0	+	0.37	(0.35,0.378]	chr6	269859	3	SS5_PROX	SS5_PROX:INTRON	C6orf89	ENSG00000198663.17	ENST00000359359.6:ENST00000355190.7:ENST00000373685.1:ENST00000480824.7	protein_coding	protein_coding	protein_coding	protein_coding	3	39	2	1.9755	2.187445	2.39939	0.0458078	0.0398617	0.161534	0.149888
chr6	167018831	167018930	3033565	0	+	0.353535	(0.35,0.378]	chr6	282656	49	INTRON	INTRON	CEP43	ENSG00000213066.13	ENST00000622353.4:ENST00000366847.9:ENST00000349556.4	protein_coding	protein_coding	protein_coding	protein_coding	3	39	2	1.9755	2.187445	2.39939	0.0458078	0.0398617	0.161534	0.149888
chr1	246901256	246901352	681648	0	-	0.510417	(0.476,0.515]	chr1	79999	4	INTRON	INTRON	AHCTF1	ENSG00000153207.16	ENST00000648844.2:ENST00000326225.3:ENST00000366508.5	protein_coding	protein_coding	protein_coding	protein_coding	4	43	2	1.74317	2.187425	2.63168	0.0396373	0.0237106	0.161534	0.118716
chr11	68461626	68461726	4817341	0	+	0.51	(0.476,0.515]	chr11	448907	4	INTRON	INTRON	PPP6R3	ENSG00000110075.15	ENST00000530427.5:ENST00000528635.5:ENST00000529907.5:ENST00000533127.5:ENST00000534534.5:ENST00000529344.5:ENST00000524845.5:ENST00000393800.7:ENST00000265637.8:ENST00000524904.5:ENST00000393801.7:ENST00000265636.9:ENST00000529710.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	43	2	1.74317	2.187425	2.63168	0.0396373	0.0237106	0.161534	0.118716
chr11	95800483	95800583	4853632	0	+	0.49	(0.476,0.515]	chr11	452698	7	INTRON	INTRON	CEP57	ENSG00000166037.11	ENST00000537677.5:ENST00000325486.9:ENST00000325542.10:ENST00000538095.1:ENST00000544522.5:ENST00000539855.5:ENST00000541365.5:ENST00000535497.1:ENST00000540830.5:ENST00000538658.5:ENST00000541150.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	43	2	1.74317	2.187425	2.63168	0.0396373	0.0237106	0.161534	0.118716
chr3	38393108	38393208	1399956	0	+	0.44	(0.408,0.44]	chr3	146865	134	INTRON	INTRON	XYLB	ENSG00000093217.11	ENST00000207870.8:ENST00000650590.1:ENST00000424034.5:ENST00000649234.1:ENST00000472721.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	68	2	1.7743	2.18739	2.60048	0.0244755	0.00484324	0.12011	0.0640618
chrX	154709833	154709932	7914904	0	-	0.373737	(0.35,0.378]	chrX	806091	94	INTRON	INTRON	GAB3	ENSG00000160219.12	ENST00000496390.5:ENST00000424127.3:ENST00000369575.7:ENST00000369568.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	122	2	2.02753	2.1873750000000003	2.34722	0.00372465	0.00312988	0.0561984	0.0499376
chr12	24927249	24927349	5297694	0	-	0.37	(0.35,0.378]	chr12	503884	243	INTRON	INTRON	BCAT1	ENSG00000060982.15	ENST00000261192.12:ENST00000342945.9:ENST00000539780.5:ENST00000546285.1	protein_coding	protein_coding	protein_coding	protein_coding	3	39	2	1.90405	2.18735	2.47065	0.0482651	0.0386172	0.171852	0.142656
chr17	43265714	43265814	6776845	0	-	0.48	(0.476,0.515]	chr17	667944	319	INTRON	INTRON	CCDC200	ENSG00000236383.9	ENST00000594691.6:ENST00000615433.2	protein_coding	protein_coding	protein_coding	protein_coding	5	63	2	1.99341	2.18735	2.38129	0.037389	0.00474233	0.155878	0.0600445
chr10	131911461	131911561	4536969	0	+	0.37	(0.35,0.378]	chr10	418860	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	PPP2R2D	ENSG00000175470.20	ENST00000455566.6:ENST00000616467.4:ENST00000482010.6:ENST00000470416.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	81	2	1.6756	2.18732	2.69904	0.0219737	0.00438476	0.123836	0.0585064
chr14	35023873	35023970	5691466	0	+	0.402062	(0.378,0.408]	chr14	541316	4	INTRON	INTRON	SRP54	ENSG00000100883.13	ENST00000556994.5:ENST00000678836.1:ENST00000546080.6:ENST00000555746.6:ENST00000678963.1:ENST00000678477.1:ENST00000677621.1:ENST00000678519.1:ENST00000678627.1:ENST00000216774.11:ENST00000555557.5:ENST00000678274.1:ENST00000677647.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	66	2	1.70666	2.187255	2.66785	0.0224639	0.0140577	0.11692	0.102916
chr11	65202575	65202674	4804598	0	+	0.525253	(0.515,0.57]	chr11	446277	135	INTRON	INTRON	CAPN1	ENSG00000014216.16	ENST00000533820.5:ENST00000533129.5:ENST00000524773.5:ENST00000279247.11:ENST00000527323.5:ENST00000533079.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	31	2	2.03361	2.18724	2.34087	0.0469761	0.0325854	0.151917	0.145164
chr21	42867080	42867180	7467785	0	-	0.57	(0.515,0.57]	chr21	760973	31	INTRON	INTRON	WDR4	ENSG00000160193.12	ENST00000330317.6:ENST00000476326.5:ENST00000398208.3:ENST00000492742.5:ENST00000479429.5:ENST00000463902.5:ENST00000470658.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	31	2	2.03361	2.18724	2.34087	0.0469761	0.0325854	0.151917	0.145164
chr5	12789333	12789433	2320734	0	+	0.39	(0.378,0.408]	chr5	224802	287	INTRON	INTRON	LINC01194	ENSG00000248131.6	ENST00000505196.1	lncRNA	lncRNA	lncRNA	lncRNA	3	40	2	2.11194	2.18723	2.26252	0.056222	0.0292534	0.18407	0.128055
chr11	64771837	64771937	4965238	0	-	0.46	(0.44,0.476]	chr11	467531	3	SS3_PROX	SS3_PROX:INTRON	SF1	ENSG00000168066.21	ENST00000334944.9:ENST00000227503.13:ENST00000377394.7:ENST00000448404.5:ENST00000377390.8:ENST00000377387.5:ENST00000681407.1:ENST00000433274.6:ENST00000633899.1:ENST00000413951.5:ENST00000432725.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	89	2	1.92621	2.187165	2.44812	0.00813281	0.00368597	0.0810802	0.0535094
chr7	4768948	4769047	3270792	0	+	0.494949	(0.476,0.515]	chr7	303926	66	UTR3	UTR3:EXON_MRNA	FOXK1	ENSG00000164916.11	ENST00000328914.5	protein_coding	protein_coding	protein_coding	protein_coding	7	82	2	1.78315	2.187115	2.59108	0.0215899	0.00196853	0.123836	0.0402283
chr16	9108425	9108524	6285540	0	+	0.484848	(0.476,0.515]	chr16	601929	53	UTR3	UTR3:EXON_MRNA:INTRON	C16orf72	ENSG00000182831.12	ENST00000327827.12:ENST00000574285.2	protein_coding	protein_coding	protein_coding	protein_coding	7	60	2	1.32251	2.187015	3.05152	0.0533705	0.0064848	0.179876	0.0699952
chr19	28490255	28490355	7165997	0	-	0.59	(0.57,1]	chr19	724189	220	INTRON	INTRON	ENSG00000283403:ENSG00000267243	ENSG00000283403.1:ENSG00000267243.6	ENST00000592347.5:ENST00000593065.5	lncRNA	lncRNA	lncRNA	lncRNA	5	31	2	1.63919	2.186965	2.73474	0.05421	0.00241874	0.164887	0.0454275
chr11	62607294	62607392	4959967	0	-	0.346939	(0.32,0.35]	chr11	466434	3	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	EML3	ENSG00000149499.12	ENST00000394773.7:ENST00000278845.8:ENST00000394776.8:ENST00000529309.5:ENST00000494176.6:ENST00000531557.5:ENST00000494448.5:ENST00000483199.5:ENST00000438258.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	14	184	2	1.94922	2.1869449999999997	2.42467	0.00458723	5.70244e-4	0.0595107	0.0217398
chr5	10393002	10393098	2318047	0	+	0.4375	(0.408,0.44]	chr5	224650	9	INTRON	INTRON	MARCHF6	ENSG00000145495.16	ENST00000274140.10:ENST00000449913.6:ENST00000511802.5:ENST00000503788.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	50	2	1.6546400000000001	2.186875	2.71911	0.0329965	0.0189489	0.145298	0.108861
chr1	45592836	45592933	93288	0	+	0.381443	(0.378,0.408]	chr1	12572	12	INTRON	INTRON	NASP	ENSG00000132780.17	ENST00000437901.6:ENST00000537798.5:ENST00000437362.6:ENST00000350030.8:ENST00000464190.6:ENST00000527359.5:ENST00000528084.5:ENST00000453748.5:ENST00000525515.5:ENST00000527470.5:ENST00000529333.5:ENST00000531532.5:ENST00000530840.5:ENST00000528238.5:ENST00000534101.1:ENST00000470768.5:ENST00000372052.8:ENST00000351223.7:ENST00000629893.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	53	2	1.89621	2.186865	2.47752	0.0488044	0.0092831	0.173377	0.0817766
chr2	197967163	197967263	970728	0	+	0.39	(0.378,0.408]	chr2	104858	1565	INTRON	INTRON	PLCL1	ENSG00000115896.16	ENST00000428675.6:ENST00000435320.1:ENST00000487695.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	38	2	1.8252	2.186845	2.54849	0.0619563	0.0273196	0.174514	0.136494
chr9	96969262	96969362	4298545	0	-	0.4	(0.378,0.408]	chr9	395256	100	INTRON	INTRON	MFSD14C	ENSG00000196312.15	ENST00000647176.1:ENST00000645073.1:ENST00000637076.1:ENST00000637099.1:ENST00000637864.1:ENST00000652726.1:ENST00000637811.1:ENST00000650909.1	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript:transcribed_unprocessed_pseudogene	3	38	2	1.8252	2.186845	2.54849	0.0619563	0.0273196	0.174514	0.136494
chr21	37377414	37377514	7406328	0	+	0.39	(0.378,0.408]	chr21	754850	19	INTRON	INTRON	DYRK1A	ENSG00000157540.22	ENST00000646523.1:ENST00000647425.1:ENST00000647188.2:ENST00000647504.1:ENST00000644942.1:ENST00000338785.8:ENST00000643624.1:ENST00000643551.1:ENST00000426672.6:ENST00000398960.7	protein_coding	protein_coding	protein_coding	protein_coding	13	142	2	1.99845	2.18672	2.37499	0.00259953	0.00165935	0.0454353	0.0376822
chr15	95664531	95664631	6108612	0	+	0.41	(0.408,0.44]	chr15	581771	112	INTRON	INTRON	ENSG00000275016	ENSG00000275016.5	ENST00000612595.2:ENST00000661571.1:ENST00000614344.5:ENST00000667344.1:ENST00000666682.1:ENST00000663174.1:ENST00000661536.1:ENST00000615194.1:ENST00000667774.1:ENST00000616588.4:ENST00000656202.1:ENST00000666386.1:ENST00000611285.1	lncRNA	lncRNA	lncRNA	lncRNA	3	37	2	1.88062	2.1866	2.49258	0.0534548	0.0314608	0.162935	0.144381
chr2	127807352	127807452	1225847	0	-	0.43	(0.408,0.44]	chr2	130519	360	INTRON	INTRON	WDR33	ENSG00000136709.12	ENST00000322313.9:ENST00000436787.5:ENST00000393006.5:ENST00000409658.7:ENST00000408998.1	protein_coding	protein_coding	protein_coding	protein_coding	3	37	2	1.88062	2.1866	2.49258	0.0534548	0.0314608	0.162935	0.144381
chr5	90691541	90691634	2421757	0	+	0.473118	(0.44,0.476]	chr5	232946	1	INTRON	INTRON	ADGRV1	ENSG00000164199.18	ENST00000405460.9:ENST00000640403.1:ENST00000639473.1:ENST00000639431.1:ENST00000640779.1:ENST00000640012.1:ENST00000640374.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	111	2	2.1123	2.186575	2.26085	0.0039479	0.0023263	0.0548259	0.0442989
chr16	16517912	16518012	6311041	0	+	0.29	(0.28,0.32]	chr16	604098	179	INTRON	INTRON	ENSG00000260126	ENSG00000260126.2	ENST00000567465.2	lncRNA	lncRNA	lncRNA	lncRNA	4	55	2	1.85772	2.1863	2.51488	0.0380957	0.0300199	0.142135	0.141678
chr13	32523363	32523463	5572698	0	-	0.49	(0.476,0.515]	chr13	532565	12	EXON_MRNA	EXON_MRNA:INTRON	N4BP2L2	ENSG00000244754.9	ENST00000357505.10:ENST00000399396.7:ENST00000504114.5:ENST00000446957.6:ENST00000674456.1:ENST00000674161.1:ENST00000674422.1:ENST00000674272.1:ENST00000674452.1:ENST00000674384.1:ENST00000505213.5:ENST00000674219.1:ENST00000267068.5:ENST00000674349.1:ENST00000674428.1:ENST00000503814.2:ENST00000674465.1:ENST00000674421.1:ENST00000674180.1:ENST00000674297.1:ENST00000674293.1:ENST00000674480.1:ENST00000674377.1:ENST00000674437.1:ENST00000674327.1:ENST00000674399.1:ENST00000674196.1:ENST00000674163.1:ENST00000511143.5:ENST00000674484.1:ENST00000475731.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	24	255	2	1.96755	2.186255	2.40496	6.69571e-4	2.52096e-4	0.0234874	0.0146985
chr7	75463008	75463108	3558697	0	-	0.59	(0.57,1]	chr7	331545	204	INTRON	INTRON	POM121C	ENSG00000272391.6	ENST00000615331.5:ENST00000398379.2	protein_coding	protein_coding	protein_coding	protein_coding	9	46	2	1.70935	2.1862	2.66305	0.00964816	0.00327879	0.0870749	0.0509077
chr1	10061544	10061644	19412	0	+	0.43	(0.408,0.44]	chr1	1838	275	INTRON	INTRON	UBE4B	ENSG00000130939.20	ENST00000672724.1:ENST00000253251.12:ENST00000343090.11:ENST00000377153.5	protein_coding	protein_coding	protein_coding	protein_coding	3	36	2	1.93243	2.1861550000000003	2.43988	0.0441194	0.0398236	0.162255	0.143072
chr2	113751867	113751967	1216779	0	-	0.44	(0.408,0.44]	chr2	129536	9	INTRON	INTRON	SLC35F5	ENSG00000115084.15	ENST00000245680.7:ENST00000409106.5:ENST00000409342.1:ENST00000498768.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	36	2	1.93243	2.1861550000000003	2.43988	0.0441194	0.0398236	0.162255	0.143072
chr6	159737492	159737592	3022491	0	+	0.43	(0.408,0.44]	chr6	281897	8	INTRON	INTRON	WTAP	ENSG00000146457.16	ENST00000358372.8:ENST00000650096.1:ENST00000614346.4:ENST00000621533.5:ENST00000631126.2:ENST00000337387.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	36	2	1.93243	2.1861550000000003	2.43988	0.0441194	0.0398236	0.162255	0.143072
chr7	92562090	92562185	3570631	0	-	0.421053	(0.408,0.44]	chr7	332705	15	UTR3	UTR3:EXON_MRNA	FAM133B	ENSG00000234545.8	ENST00000445716.6:ENST00000438306.5:ENST00000415397.6:ENST00000481407.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	36	2	1.93243	2.1861550000000003	2.43988	0.0441194	0.0398236	0.162255	0.143072
chr2	99190954	99191054	834721	0	+	0.38	(0.378,0.408]	chr2	93642	23	INTRON	INTRON	MRPL30	ENSG00000185414.20	ENST00000473743.5:ENST00000338148.8:ENST00000409145.5:ENST00000465432.1:ENST00000409841.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	51	2	1.76032	2.1861	2.61188	0.0721577	0.0047055	0.187433	0.0631419
chr2	148040705	148040805	886944	0	+	0.4	(0.378,0.408]	chr2	98614	1	SS3_PROX	SS3_PROX:INTRON	MBD5	ENSG00000204406.14	ENST00000407073.5:ENST00000488372.5:ENST00000496158.5:ENST00000642680.2:ENST00000638130.1:ENST00000637308.1:ENST00000473478.5:ENST00000635796.1:ENST00000637997.1:ENST00000470063.5:ENST00000638043.2:ENST00000469438.1:ENST00000638090.1:ENST00000637445.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	51	2	1.76032	2.1861	2.61188	0.0721577	0.0047055	0.187433	0.0631419
chr19	57861434	57861533	7106152	0	+	0.444444	(0.44,0.476]	chr19	713245	14	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ZNF587	ENSG00000198466.12	ENST00000339656.8:ENST00000419854.1:ENST00000596433.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	10	112	2	1.92652	2.18607	2.44562	0.00669501	0.00135452	0.0707084	0.0339121
chr7	148879317	148879416	3670714	0	-	0.474747	(0.44,0.476]	chr7	340632	81	INTRON	INTRON	EZH2	ENSG00000106462.12	ENST00000683292.1:ENST00000320356.7:ENST00000492143.5:ENST00000478654.5:ENST00000350995.6:ENST00000460911.5:ENST00000683744.1:ENST00000682317.1:ENST00000682263.1:ENST00000476773.5:ENST00000483967.5:ENST00000498186.5:ENST00000483012.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	134	2	1.962	2.185955	2.40991	0.00427231	8.42944e-4	0.0574102	0.0263813
chr20	63286058	63286138	7299779	0	+	0.6625	(0.57,1]	chr20	742809	2	CDS	CDS:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ARFGAP1	ENSG00000101199.13	ENST00000519273.6:ENST00000519604.5:ENST00000547204.5:ENST00000549047.5:ENST00000370283.9:ENST00000523460.5:ENST00000520485.5:ENST00000370275.8:ENST00000518601.6:ENST00000353546.7:ENST00000518794.6:ENST00000468975.6:ENST00000518691.1:ENST00000518618.2:ENST00000395285.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	30	2	1.58776	2.185925	2.78409	0.0295652	0.0116033	0.142135	0.0889104
chr20	1387757	1387856	7305322	0	-	0.464646	(0.44,0.476]	chr20	743696	97	INTRON	INTRON	FKBP1A	ENSG00000088832.18	ENST00000677937.1:ENST00000439640.5:ENST00000618612.5:ENST00000400137.9:ENST00000678136.1:ENST00000677335.1:ENST00000381719.8:ENST00000678408.1:ENST00000381724.8:ENST00000381715.4:ENST00000678325.1:ENST00000612074.5:ENST00000677078.1:ENST00000677533.1:ENST00000679195.1:ENST00000614856.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	58	2	2.12992	2.185905	2.24189	0.0193405	0.010975	0.108861	0.092635
chr3	179370983	179371082	1567172	0	+	0.323232	(0.32,0.35]	chr3	162115	7	EXON_LNCRNA	EXON_LNCRNA:INTRON	MFN1:ENSG00000289574	ENSG00000171109.19:ENSG00000289574.1	ENST00000471841.6:ENST00000357390.8:ENST00000263969.9:ENST00000474903.1:ENST00000686574.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:nonsense_mediated_decay:lncRNA	8	105	2	1.5565	2.18585	2.8152	0.0383034	6.37027e-4	0.141858	0.0228285
chr19	10968595	10968694	7015633	0	+	0.50505	(0.476,0.515]	chr19	697168	29	INTRON	INTRON	SMARCA4	ENSG00000127616.20	ENST00000644737.1:ENST00000642726.1:ENST00000646484.1:ENST00000643549.1:ENST00000643296.1:ENST00000647230.1:ENST00000642628.1:ENST00000646510.1:ENST00000429416.8:ENST00000644760.1:ENST00000344626.10:ENST00000646693.2:ENST00000645460.1:ENST00000541122.6:ENST00000589677.5:ENST00000444061.8:ENST00000590574.6	protein_coding	protein_coding	protein_coding	protein_coding	5	58	2	2.16377	2.18583	2.20789	0.0243026	0.00820497	0.12011	0.081115
chr21	34079423	34079523	7401151	0	+	0.5	(0.476,0.515]	chr21	753967	53	INTRON	INTRON	MRPS6:SLC5A3	ENSG00000243927.6:ENSG00000198743.7	ENST00000488492.5:ENST00000477091.5:ENST00000399312.3:ENST00000381151.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	58	2	2.16377	2.18583	2.20789	0.0243026	0.00820497	0.12011	0.081115
chr16	89562445	89562532	6420897	0	+	0.528736	(0.515,0.57]	chr16	616321	1	EXON_MRNA	EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPL13	ENSG00000167526.14	ENST00000563749.1:ENST00000484610.5:ENST00000567815.5:ENST00000563270.5:ENST00000311528.10:ENST00000562879.5:ENST00000452368.7:ENST00000393099.3:ENST00000399461.8:ENST00000570149.1:ENST00000472354.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	50	2	1.88259	2.185805	2.48902	0.0251849	0.00760558	0.133519	0.0749571
chr12	103796593	103796693	5401357	0	-	0.51	(0.476,0.515]	chr12	515251	3	SS5_PROX	SS5_PROX:INTRON	NT5DC3	ENSG00000111696.12	ENST00000392876.8	protein_coding	protein_coding	protein_coding	protein_coding	4	48	2	2.05154	2.185775	2.32001	0.0336015	0.0136217	0.134145	0.101682
chr1	51747257	51747344	100704	0	+	0.321839	(0.32,0.35]	chr1	13294	1	INTRON	INTRON	OSBPL9	ENSG00000117859.19	ENST00000371714.5:ENST00000428468.6:ENST00000447887.5:ENST00000495776.5:ENST00000435274.6:ENST00000453295.5:ENST00000489990.5:ENST00000484890.5:ENST00000532975.5:ENST00000534040.5:ENST00000527631.5:ENST00000531828.5:ENST00000361556.9:ENST00000473207.6:ENST00000533884.5:ENST00000481937.5:ENST00000526917.5:ENST00000462759.5:ENST00000486942.5:ENST00000467064.5:ENST00000524620.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	42	2	2.13945	2.185635	2.23182	0.068598	0.0254517	0.184298	0.133676
chr1	151404504	151404603	554385	0	-	0.333333	(0.32,0.35]	chr1	65468	19	UTR3	UTR3:EXON_MRNA	POGZ	ENSG00000143442.22	ENST00000271715.7:ENST00000358476.7:ENST00000392723.5:ENST00000368863.6:ENST00000409503.5:ENST00000531094.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	42	2	2.13945	2.185635	2.23182	0.068598	0.0254517	0.184298	0.133676
chr16	84985576	84985676	6533908	0	-	0.35	(0.32,0.35]	chr16	633131	32	INTRON	INTRON	ZDHHC7	ENSG00000153786.13	ENST00000313732.9:ENST00000344861.9:ENST00000564466.5:ENST00000569488.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	42	2	2.13945	2.185635	2.23182	0.068598	0.0254517	0.184298	0.133676
chr6	87202426	87202526	2913727	0	+	0.35	(0.32,0.35]	chr6	275281	322	INTRON	INTRON	ZNF292	ENSG00000188994.13	ENST00000369577.8:ENST00000369578.6:ENST00000518845.1:ENST00000339907.8:ENST00000496806.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	42	2	2.13945	2.185635	2.23182	0.068598	0.0254517	0.184298	0.133676
chr5	151804326	151804405	2522154	0	+	0.253165	[0,0.28]	chr5	241374	4	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	G3BP1	ENSG00000145907.16	ENST00000678964.1:ENST00000678925.1:ENST00000394123.7:ENST00000676978.1:ENST00000679289.1:ENST00000677493.1:ENST00000676644.1:ENST00000677757.1:ENST00000676827.1:ENST00000520177.6:ENST00000676634.1:ENST00000678854.1:ENST00000676911.1:ENST00000356245.8:ENST00000678646.1:ENST00000677381.1:ENST00000678904.1:ENST00000678910.1:ENST00000678101.1:ENST00000678369.1:ENST00000677923.1:ENST00000677323.1:ENST00000677687.1:ENST00000679193.1:ENST00000678657.1:ENST00000676715.1:ENST00000676899.1:ENST00000676734.1:ENST00000676878.1:ENST00000678295.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	17	257	2	1.77308	2.185615	2.59815	0.00491319	0.00117758	0.0644377	0.0313972
chr3	25750398	25750497	1642506	0	-	0.373737	(0.35,0.378]	chr3	168658	96	INTRON	INTRON	NGLY1	ENSG00000151092.18	ENST00000280700.10:ENST00000428257.5:ENST00000675217.1:ENST00000676225.1:ENST00000493324.5:ENST00000396649.7:ENST00000675178.1:ENST00000675680.1:ENST00000308710.9:ENST00000280699.13:ENST00000674841.1:ENST00000675234.1:ENST00000463611.2:ENST00000417874.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	47	2	1.76773	2.18557	2.60341	0.0373863	0.0275785	0.155878	0.123904
chr18	36149967	36150067	6891636	0	+	0.34	(0.32,0.35]	chr18	683023	32	INTRON	INTRON	ELP2	ENSG00000134759.14	ENST00000351393.10:ENST00000442325.6:ENST00000358232.11:ENST00000423854.6:ENST00000539560.5:ENST00000350494.10:ENST00000542824.5:ENST00000540799.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	58	2	1.68188	2.1855450000000003	2.68921	0.031521	0.0230336	0.144381	0.118056
chr7	152158121	152158219	3678448	0	-	0.438776	(0.408,0.44]	chr7	341416	3	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	KMT2C	ENSG00000055609.21	ENST00000360104.8:ENST00000262189.11:ENST00000418061.2:ENST00000680877.1:ENST00000424877.6:ENST00000679560.1:ENST00000683120.1:ENST00000681923.1:ENST00000679393.1:ENST00000683200.1:ENST00000680029.1:ENST00000683337.1:ENST00000683178.1:ENST00000683502.1:ENST00000684261.1:ENST00000682283.1:ENST00000473186.5:ENST00000684649.1:ENST00000679882.1:ENST00000683886.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	90	2	2.17577	2.185505	2.19524	0.00990486	0.00269594	0.0838372	0.0479115
chr1	28739400	28739500	58369	0	+	0.49	(0.476,0.515]	chr1	7590	2	SS5_PROX	SS5_PROX:INTRON	YTHDF2	ENSG00000198492.16	ENST00000542507.5:ENST00000474884.5:ENST00000373812.8:ENST00000541996.5:ENST00000478283.5:ENST00000496288.5:ENST00000476976.1:ENST00000475796.5:ENST00000468863.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	66	2	1.87147	2.18544	2.49941	0.0157856	0.00811651	0.109464	0.0766625
chr19	29951810	29951910	7047649	0	+	0.49	(0.476,0.515]	chr19	702657	88	INTRON	INTRON	URI1	ENSG00000105176.18	ENST00000360605.8:ENST00000570564.5:ENST00000574233.5:ENST00000392271.6:ENST00000574110.5:ENST00000574666.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	66	2	1.87147	2.18544	2.49941	0.0157856	0.00811651	0.109464	0.0766625
chr7	128745667	128745766	3408439	0	+	0.343434	(0.32,0.35]	chr7	318422	59	INTRON	INTRON	CALU	ENSG00000128595.17	ENST00000535011.6:ENST00000542996.6:ENST00000249364.9:ENST00000449187.6:ENST00000479257.5	protein_coding	protein_coding	protein_coding	protein_coding	6	64	2	1.37958	2.185415	2.99125	0.0577841	0.00958447	0.188484	0.0820838
chr8	25448901	25448998	3926252	0	-	0.381443	(0.378,0.408]	chr8	359451	23	INTRON	INTRON	KCTD9	ENSG00000104756.16	ENST00000221200.9:ENST00000519665.5:ENST00000523140.5:ENST00000522493.5:ENST00000518067.5:ENST00000518997.5:ENST00000523294.5:ENST00000521458.5:ENST00000524217.1:ENST00000520405.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	61	2	2.05897	2.18539	2.31181	0.0339294	0.00548372	0.134508	0.0671431
chr1	109367228	109367317	520708	0	-	0.359551	(0.35,0.378]	chr1	61180	6	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	SORT1	ENSG00000134243.12	ENST00000538502.5:ENST00000256637.8:ENST00000493736.5:ENST00000482236.5:ENST00000633956.1:ENST00000483508.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	47	2	1.58862	2.18537	2.78212	0.0615516	0.0168532	0.193423	0.103549
chr3	9446324	9446408	1359410	0	+	0.333333	(0.32,0.35]	chr3	142768	2	SS3_PROX	SS3_PROX:INTRON	SETD5	ENSG00000168137.20	ENST00000402198.7:ENST00000682536.1:ENST00000663774.1:ENST00000665872.1:ENST00000666307.1:ENST00000693430.1:ENST00000691925.1:ENST00000684606.1:ENST00000691175.1:ENST00000688835.1:ENST00000443339.5:ENST00000406341.5:ENST00000670063.1:ENST00000684055.1:ENST00000407969.5:ENST00000493918.5:ENST00000399686.6:ENST00000413704.5:ENST00000691988.1:ENST00000466242.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	89	2	2.10434	2.18537	2.2664	0.0199969	0.00423324	0.109608	0.0595557
chr8	52702613	52702712	3950990	0	-	0.59596	(0.57,1]	chr8	362390	153	INTRON	INTRON	RB1CC1	ENSG00000023287.13	ENST00000025008.10:ENST00000435644.6:ENST00000521611.1:ENST00000518710.5:ENST00000517963.1:ENST00000518211.1:ENST00000518468.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	11	64	2	2.06823	2.185365	2.3025	0.00680672	3.81114e-4	0.0711884	0.0176557
chr1	40396399	40396499	81671	0	+	0.32	(0.28,0.32]	chr1	10558	25	INTRON	INTRON	SMAP2	ENSG00000084070.12	ENST00000435168.6:ENST00000372718.8:ENST00000372708.5:ENST00000614549.4	protein_coding	protein_coding	protein_coding	protein_coding	6	86	2	2.15001	2.1853499999999997	2.22069	0.0243177	0.00621783	0.12011	0.0717536
chr12	12717744	12717839	5080886	0	+	0.568421	(0.515,0.57]	chr12	480181	5	UTR5	UTR5:EXON_MRNA:INTRON	CDKN1B	ENSG00000111276.12	ENST00000684771.1:ENST00000682620.1:ENST00000477087.1:ENST00000228872.9:ENST00000614874.2:ENST00000396340.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	89	2	1.72899	2.1853499999999997	2.64171	0.00899744	0.00130576	0.0851009	0.0331539
chr1	179870967	179871064	593400	0	-	0.42268	(0.408,0.44]	chr1	71116	14	INTRON	INTRON	TOR1AIP2	ENSG00000169905.13	ENST00000367612.7:ENST00000609928.6:ENST00000482587.5:ENST00000495650.1:ENST00000474318.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	46	2	1.78881	2.1853	2.58179	0.0370259	0.024638	0.139194	0.131869
chr1	1737389	1737489	361350	0	-	0.55	(0.515,0.57]	chr1	42123	23	EXON_LNCRNA	EXON_LNCRNA:INTRON	ENSG00000268575:SLC35E2A	ENSG00000268575.1:ENSG00000215790.8	ENST00000598846.1:ENST00000647043.1:ENST00000246421.4:ENST00000643943.1	lncRNA	lncRNA	lncRNA:transcribed_unprocessed_pseudogene	lncRNA:processed_transcript:transcribed_unprocessed_pseudogene	11	105	2	2.16572	2.18527	2.20482	0.0029374	0.00129351	0.0483262	0.0333764
chr1	246930928	246931028	681953	0	-	0.45	(0.44,0.476]	chr1	80044	4	SS5_PROX	SS5_PROX:INTRON	AHCTF1	ENSG00000153207.16	ENST00000648844.2:ENST00000326225.3:ENST00000366508.5	protein_coding	protein_coding	protein_coding	protein_coding	10	112	2	1.86755	2.18526	2.50297	0.00715715	0.00135188	0.0756118	0.0336321
chr15	63207544	63207644	6040932	0	+	0.43	(0.408,0.44]	chr15	575230	174	INTRON	INTRON	RAB8B	ENSG00000166128.13	ENST00000558990.5:ENST00000558119.5:ENST00000559927.1:ENST00000321437.9:ENST00000559006.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	59	2	1.58763	2.18526	2.78289	0.0639217	0.0022785	0.177824	0.0437013
chr7	155701688	155701788	3452472	0	+	0.47	(0.44,0.476]	chr7	322678	3	INTRON	INTRON	RBM33	ENSG00000184863.11	ENST00000401878.8:ENST00000307403.6:ENST00000440108.5:ENST00000392761.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	128	2	1.45766	2.18526	2.91286	0.0259298	1.07786e-4	0.12163	0.00878438
chr20	63907859	63907959	7301086	0	+	0.51	(0.476,0.515]	chr20	743135	122	INTRON	INTRON	DNAJC5	ENSG00000101152.11	ENST00000360864.9:ENST00000470551.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	44	2	1.63838	2.185215	2.73205	0.0555021	0.0159328	0.165463	0.109464
chr12	108683384	108683484	5406293	0	-	0.32	(0.28,0.32]	chr12	516011	46	INTRON	INTRON	CORO1C	ENSG00000110880.11	ENST00000261401.8:ENST00000420959.6:ENST00000541050.5:ENST00000549384.5:ENST00000421578.6:ENST00000550542.5:ENST00000549772.5:ENST00000552871.5:ENST00000547294.5:ENST00000550032.5:ENST00000551550.5:ENST00000546571.5:ENST00000551044.1:ENST00000547170.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	62	2	2.18092	2.1852099999999997	2.1895	0.0271832	0.0227063	0.124921	0.123904
chr4	99032162	99032259	2003079	0	+	0.278351	[0,0.28]	chr4	199823	1	INTRON	INTRON	METAP1	ENSG00000164024.12	ENST00000510209.5:ENST00000296411.11:ENST00000507537.5:ENST00000506238.5:ENST00000503247.5:ENST00000510107.5:ENST00000513199.5:ENST00000506548.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	118	2	1.78859	2.18498	2.58137	0.0307903	0.00250515	0.13151	0.0464447
chr3	9390214	9390314	1611647	0	-	0.27	[0,0.28]	chr3	166260	29	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	THUMPD3-AS1	ENSG00000206573.10	ENST00000468186.5:ENST00000661342.1:ENST00000519043.5:ENST00000657509.1:ENST00000685076.1:ENST00000687342.1:ENST00000685952.1:ENST00000521609.5:ENST00000520629.5:ENST00000523354.1:ENST00000654392.1:ENST00000665171.1:ENST00000668063.1:ENST00000522525.6:ENST00000664441.2:ENST00000469846.3:ENST00000481221.7:ENST00000661714.1:ENST00000665983.1:ENST00000660363.1:ENST00000667458.1:ENST00000520447.1:ENST00000524210.2:ENST00000664273.1:ENST00000521267.5:ENST00000467069.6:ENST00000520396.1:ENST00000494680.6:ENST00000660127.1:ENST00000518437.3:ENST00000689821.1:ENST00000522221.2:ENST00000489616.1	lncRNA	lncRNA	lncRNA	lncRNA	16	233	2	1.82804	2.18493	2.54182	0.0038415	0.00239612	0.0562562	0.0440612
chr7	140085240	140085340	3659265	0	-	0.46	(0.44,0.476]	chr7	339635	6	UTR3	UTR3:EXON_MRNA	KDM7A	ENSG00000006459.11	ENST00000397560.7:ENST00000472616.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	43	2	1.69402	2.18487	2.67572	0.0456129	0.0212064	0.164236	0.113017
chr4	138165588	138165687	2245052	0	-	0.272727	[0,0.28]	chr4	219449	16	UTR3	UTR3:EXON_MRNA	SLC7A11	ENSG00000151012.13	ENST00000280612.9	protein_coding	protein_coding	protein_coding	protein_coding	4	65	2	2.09841	2.1848	2.27119	0.070351	0.0151026	0.184298	0.108435
chr12	104495306	104495406	5211067	0	+	0.36	(0.35,0.378]	chr12	493315	374	INTRON	INTRON	CHST11	ENSG00000171310.11	ENST00000303694.6:ENST00000547956.1:ENST00000549260.5:ENST00000546689.1	protein_coding	protein_coding	protein_coding	protein_coding	6	77	2	2.1686	2.18478	2.20096	0.0116706	0.0087123	0.0891208	0.0844834
chr18	9173398	9173498	6869297	0	+	0.4	(0.378,0.408]	chr18	680561	352	INTRON	INTRON	ANKRD12	ENSG00000101745.17	ENST00000585234.5:ENST00000262126.9:ENST00000577992.1:ENST00000540578.6:ENST00000581635.5:ENST00000400020.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	78	2	2.01851	2.1847700000000003	2.35103	0.014158	0.00559022	0.0959618	0.0678837
chrX	110005962	110006062	7700066	0	+	0.41	(0.408,0.44]	chrX	788130	14	INTRON	INTRON	TMEM164	ENSG00000157600.12	ENST00000372072.7:ENST00000471255.5:ENST00000372073.5:ENST00000372068.7:ENST00000288381.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	50	2	2.00768	2.184765	2.36185	0.035843	0.0133164	0.152216	0.094512
chr15	87670677	87670777	6256261	0	-	0.31	(0.28,0.32]	chr15	596826	1273	INTRON	INTRON	ENSG00000259560	ENSG00000259560.2	ENST00000665121.1:ENST00000560439.1	lncRNA	lncRNA	lncRNA	lncRNA	3	46	2	1.76293	2.184745	2.60656	0.0766478	0.0256827	0.196164	0.133676
chr20	5603270	5603369	7312266	0	-	0.333333	(0.32,0.35]	chr20	744612	41	INTRON	INTRON	GPCPD1	ENSG00000125772.14	ENST00000379019.7:ENST00000481690.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	71	2	1.83416	2.184745	2.53533	0.0631198	0.00233994	0.176946	0.0442989
chrX	123662645	123662745	7878341	0	-	0.31	(0.28,0.32]	chrX	802527	169	INTRON	INTRON	THOC2	ENSG00000125676.20	ENST00000245838.13:ENST00000355725.8:ENST00000491737.5	protein_coding	protein_coding	protein_coding	protein_coding	3	46	2	1.76293	2.184745	2.60656	0.0766478	0.0256827	0.196164	0.133676
chr19	47135805	47135905	7083918	0	+	0.59	(0.57,1]	chr19	708740	2	SS5_PROX	SS5_PROX:INTRON	SAE1	ENSG00000142230.13	ENST00000594144.5:ENST00000594526.5:ENST00000597808.5:ENST00000413379.7:ENST00000600706.5:ENST00000270225.12:ENST00000598840.5:ENST00000414294.6:ENST00000600753.1:ENST00000660039.1:ENST00000664120.1:ENST00000596995.1:ENST00000392776.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	14	77	2	1.77518	2.184675	2.59417	0.00402813	2.0266e-4	0.0578376	0.0129814
chr1	89850056	89850156	159816	0	+	0.34	(0.32,0.35]	chr1	17285	30	INTRON	INTRON	LRRC8D	ENSG00000171492.14	ENST00000525774.5:ENST00000337338.9:ENST00000394593.7:ENST00000532201.5:ENST00000414841.1:ENST00000527156.1:ENST00000441269.2	protein_coding	protein_coding	protein_coding	protein_coding	6	83	2	2.14793	2.184665	2.2214	0.0110079	0.0103516	0.0927187	0.085045
chr22	20543181	20543281	7479709	0	+	0.39	(0.378,0.408]	chr22	762972	56	INTRON	INTRON	MED15	ENSG00000099917.17	ENST00000445987.5:ENST00000444094.5:ENST00000414658.5:ENST00000486656.5:ENST00000433831.5:ENST00000432052.5:ENST00000292733.11:ENST00000263205.11:ENST00000477824.5:ENST00000406969.5:ENST00000382974.6:ENST00000441501.5:ENST00000445189.5:ENST00000451058.5:ENST00000473028.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	12	141	2	2.12901	2.1846550000000002	2.2403	0.00300572	0.00125943	0.0493883	0.03295
chr5	149504470	149504570	2750597	0	-	0.41	(0.408,0.44]	chr5	259005	33	EXON_MRNA	EXON_MRNA:INTRON	CSNK1A1:ENSG00000230551	ENSG00000113712.19:ENSG00000230551.4	ENST00000261798.10:ENST00000377843.8:ENST00000657001.1:ENST00000499521.2:ENST00000515768.6:ENST00000606719.6:ENST00000657462.1:ENST00000661952.1:ENST00000504676.5:ENST00000515435.5:ENST00000662268.1:ENST00000657706.1:ENST00000606826.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	13	136	2	1.76292	2.18465	2.60638	0.00519587	8.5078e-4	0.0654762	0.0267428
chr21	34842899	34842999	7446810	0	-	0.49	(0.476,0.515]	chr21	759836	79	INTRON	INTRON	RUNX1	ENSG00000159216.19	ENST00000300305.7:ENST00000675419.1:ENST00000437180.5:ENST00000344691.8:ENST00000482318.5:ENST00000399240.5:ENST00000358356.9:ENST00000469087.1:ENST00000399237.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	48	2	1.99197	2.18464	2.37731	0.039572	0.0111793	0.143072	0.0937192
chr12	62473576	62473676	5151228	0	+	0.5	(0.476,0.515]	chr12	487458	24	INTRON	INTRON	MON2	ENSG00000061987.16	ENST00000641654.1:ENST00000546600.5:ENST00000393630.8:ENST00000549378.5:ENST00000547095.5:ENST00000552738.5:ENST00000393629.6:ENST00000552115.5:ENST00000549286.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	48	2	2.10874	2.18454	2.26034	0.0285608	0.0166235	0.12666	0.110511
chr4	2577510	2577610	1912925	0	+	0.51	(0.476,0.515]	chr4	191976	400	INTRON	INTRON	RNF4:FAM193A	ENSG00000063978.16:ENSG00000125386.16	ENST00000508235.1:ENST00000637812.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	48	2	2.10874	2.18454	2.26034	0.0285608	0.0166235	0.12666	0.110511
chr3	43706756	43706855	1410338	0	+	0.313131	(0.28,0.32]	chr3	147937	38	INTRON	INTRON	ABHD5	ENSG00000011198.10	ENST00000643520.1:ENST00000458276.7:ENST00000649763.1:ENST00000643140.1:ENST00000643500.1:ENST00000644371.2:ENST00000013894.3:ENST00000646378.1:ENST00000643477.1:ENST00000646799.1:ENST00000454293.2:ENST00000642351.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	12	168	2	2.15434	2.18451	2.21468	0.00818138	9.69106e-4	0.0768236	0.0286715
chr15	57283196	57283294	6035793	0	+	0.326531	(0.32,0.35]	chr15	574816	2	INTRON	INTRON	TCF12	ENSG00000140262.18	ENST00000438423.6:ENST00000267811.9:ENST00000333725.10:ENST00000560190.5:ENST00000557843.5:ENST00000543579.5:ENST00000537840.5:ENST00000343827.7:ENST00000559710.5:ENST00000559703.1:ENST00000561454.1:ENST00000560191.1:ENST00000560836.1:ENST00000560948.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	82	2	2.03198	2.1844799999999998	2.33698	0.0193728	0.00536261	0.108916	0.0663076
chr4	78829324	78829423	1981917	0	+	0.323232	(0.32,0.35]	chr4	198473	28	INTRON	INTRON	BMP2K	ENSG00000138756.19	ENST00000389010.7:ENST00000502613.3:ENST00000502871.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	15	138	2	1.13957	2.18445	3.22933	0.0451793	5.51504e-4	0.163729	0.0216014
chrX	71411836	71411936	7678702	0	+	0.52	(0.515,0.57]	chrX	786269	33	INTRON	INTRON	TAF1	ENSG00000147133.17	ENST00000683202.1:ENST00000373790.9:ENST00000423759.6:ENST00000683782.1:ENST00000683668.1:ENST00000276072.9:ENST00000463163.5:ENST00000373775.8:ENST00000485087.6:ENST00000437147.8:ENST00000683358.1:ENST00000682124.1:ENST00000461764.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	16	150	2	2.10397	2.184425	2.26488	7.65398e-4	7.55855e-4	0.025449	0.0251563
chr4	82841939	82842039	2179579	0	-	0.38	(0.378,0.408]	chr4	214268	4	SS5_PROX	SS5_PROX:INTRON	SEC31A	ENSG00000138674.17	ENST00000395310.7:ENST00000513858.5:ENST00000348405.8:ENST00000503937.5:ENST00000448323.5:ENST00000311785.11:ENST00000509142.5:ENST00000443462.6:ENST00000500777.6:ENST00000505472.5:ENST00000355196.6:ENST00000508502.5:ENST00000264405.9:ENST00000505984.5:ENST00000511338.1:ENST00000515749.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	15	159	2	1.9937	2.184345	2.37499	0.00259953	0.00110696	0.0454353	0.0304955
chr1	180177217	180177315	269317	0	+	0.459184	(0.44,0.476]	chr1	31559	8	INTRON	INTRON	QSOX1	ENSG00000116260.17	ENST00000367602.8:ENST00000392029.6:ENST00000367600.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	77	2	1.81921	2.1843250000000003	2.54944	0.0142184	0.00591346	0.0960818	0.0694038
chr6	67888449	67888548	3135318	0	-	0.424242	(0.408,0.44]	chr6	292165	16	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	ENSG00000227706	ENSG00000227706.4	ENST00000657794.1:ENST00000652869.1:ENST00000662821.1:ENST00000663640.1:ENST00000660755.1:ENST00000660756.1:ENST00000667200.1:ENST00000654364.1:ENST00000670870.1:ENST00000666873.1:ENST00000658272.1:ENST00000661172.1:ENST00000412872.3	lncRNA	lncRNA	lncRNA	lncRNA	86	951	2	2.12219	2.184315	2.24644	5.40613e-5	4.27885e-5	0.00648612	0.00529798
chr1	16636867	16636967	383749	0	-	0.55	(0.515,0.57]	chr1	45226	13	INTRON	INTRON	CROCCP2	ENSG00000215908.10	ENST00000639456.1:ENST00000412962.4:ENST00000635081.1:ENST00000362058.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	3	32	2	2.01737	2.18431	2.35125	0.0436431	0.0352218	0.162255	0.137535
chr8	129475652	129475752	4060031	0	-	0.53	(0.515,0.57]	chr8	369602	184	INTRON	INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1:ENST00000676273.1:ENST00000667643.1:ENST00000668791.1:ENST00000663716.1:ENST00000663572.1:ENST00000676148.1:ENST00000667962.1:ENST00000674877.1:ENST00000675316.1:ENST00000674656.1:ENST00000446592.7:ENST00000667341.1:ENST00000675186.1:ENST00000652971.1:ENST00000661447.1:ENST00000674863.1:ENST00000675498.1:ENST00000675527.1:ENST00000676108.1:ENST00000657647.1:ENST00000675589.1:ENST00000675913.1:ENST00000675109.1:ENST00000671632.1:ENST00000671311.1:ENST00000676099.1:ENST00000660652.1:ENST00000675522.1:ENST00000675183.1:ENST00000658861.1:ENST00000663991.1:ENST00000675044.1:ENST00000675435.1:ENST00000674639.1:ENST00000676069.1:ENST00000675532.1:ENST00000674762.1:ENST00000523151.6:ENST00000675948.1:ENST00000665364.1:ENST00000657251.1:ENST00000675166.1:ENST00000674883.1:ENST00000675867.1:ENST00000674580.1:ENST00000675393.1:ENST00000520048.1:ENST00000674906.1:ENST00000676030.1:ENST00000670588.1:ENST00000675072.1:ENST00000664936.1:ENST00000652914.1:ENST00000657069.1	lncRNA	lncRNA	lncRNA	lncRNA	3	32	2	2.01737	2.18431	2.35125	0.0436431	0.0352218	0.162255	0.137535
chr4	55425813	55425903	1960902	0	+	0.288889	(0.28,0.32]	chr4	196586	5	UTR3	UTR3:EXON_MRNA:INTRON	TMEM165	ENSG00000134851.13	ENST00000381334.10:ENST00000608091.1:ENST00000506103.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	104	2	1.93544	2.1843	2.43316	0.0276828	0.00186476	0.123904	0.0399675
chr8	90309867	90309967	3793192	0	+	0.33	(0.32,0.35]	chr8	351786	627	INTRON	INTRON	LINC00534	ENSG00000253394.7	ENST00000662145.1:ENST00000655523.1:ENST00000517400.6:ENST00000658299.1:ENST00000663329.1:ENST00000658342.1:ENST00000523283.6:ENST00000655219.1:ENST00000662692.1:ENST00000667296.1:ENST00000667565.1:ENST00000523406.2:ENST00000659030.1:ENST00000653734.1:ENST00000654785.1:ENST00000524361.5:ENST00000668745.1:ENST00000666641.2:ENST00000661519.1:ENST00000671657.1:ENST00000655123.1:ENST00000663098.1:ENST00000670903.1:ENST00000654946.1	lncRNA	lncRNA	lncRNA	lncRNA	14	177	2	2.02671	2.18424	2.34177	0.00213698	0.00169095	0.0417866	0.0381936
chr7	23410169	23410269	3503060	0	-	0.38	(0.378,0.408]	chr7	326892	47	INTRON	INTRON	IGF2BP3	ENSG00000136231.14	ENST00000258729.8:ENST00000421467.6:ENST00000468263.5:ENST00000479504.5:ENST00000466809.6:ENST00000491719.5:ENST00000465058.5:ENST00000469723.5:ENST00000476938.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	85	2	1.52219	2.184215	2.84624	0.0531838	4.63696e-4	0.162538	0.0195302
chr16	227141	227241	6426167	0	-	0.41	(0.408,0.44]	chr16	617446	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	LUC7L	ENSG00000007392.17	ENST00000337351.8:ENST00000426094.5:ENST00000397783.5:ENST00000629543.2:ENST00000490762.5:ENST00000293872.13:ENST00000419516.5:ENST00000397780.5:ENST00000418978.5:ENST00000430864.5:ENST00000443357.5:ENST00000494366.5:ENST00000469109.1:ENST00000428363.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	36	2	2.00768	2.1842050000000004	2.36073	0.0481658	0.035843	0.153019	0.152216
chr20	41065185	41065285	7273870	0	+	0.43	(0.408,0.44]	chr20	739222	33	INTRON	INTRON	TOP1	ENSG00000198900.7	ENST00000361337.3:ENST00000681113.1:ENST00000681058.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	36	2	2.00768	2.1842050000000004	2.36073	0.0481658	0.035843	0.153019	0.152216
chr22	40269422	40269521	7519104	0	+	0.424242	(0.408,0.44]	chr22	768132	20	INTRON	INTRON	TNRC6B	ENSG00000100354.21	ENST00000301923.13:ENST00000402203.5:ENST00000454349.7:ENST00000335727.13:ENST00000446273.1	protein_coding	protein_coding	protein_coding	protein_coding	3	36	2	2.00768	2.1842050000000004	2.36073	0.0481658	0.035843	0.153019	0.152216
chr12	103834365	103834465	5401742	0	-	0.4	(0.378,0.408]	chr12	515283	189	INTRON	INTRON	NT5DC3	ENSG00000111696.12	ENST00000392876.8	protein_coding	protein_coding	protein_coding	protein_coding	3	39	2	2.00398	2.1841299999999997	2.36428	0.0441088	0.0393906	0.162255	0.143072
chr15	101208331	101208430	6269375	0	-	0.383838	(0.378,0.408]	chr15	597935	189	INTRON	INTRON	CHSY1	ENSG00000131873.7	ENST00000254190.4:ENST00000543813.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	39	2	2.00398	2.1841299999999997	2.36428	0.0441088	0.0393906	0.162255	0.143072
chr6	126000113	126000211	2956198	0	+	0.387755	(0.378,0.408]	chr6	278005	1	INTRON	INTRON	TRMT11	ENSG00000066651.20	ENST00000479748.5:ENST00000368332.7:ENST00000461129.5:ENST00000648977.1:ENST00000468097.5:ENST00000334379.11	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	39	2	2.00398	2.1841299999999997	2.36428	0.0441088	0.0393906	0.162255	0.143072
chr15	42514936	42515036	6009801	0	+	0.52	(0.515,0.57]	chr15	572167	3	SS3_PROX	SS3_PROX:INTRON	SNAP23	ENSG00000092531.10	ENST00000561526.5:ENST00000568451.5:ENST00000563765.5:ENST00000349777.5:ENST00000249647.8:ENST00000564153.5:ENST00000567094.5:ENST00000566327.5:ENST00000568331.5:ENST00000566035.5:ENST00000568859.5:ENST00000568514.5:ENST00000397138.5:ENST00000563873.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	57	2	1.68687	2.184095	2.68132	0.0300837	0.00324198	0.129186	0.0524329
chr17	82585271	82585371	6693269	0	+	0.46	(0.44,0.476]	chr17	654668	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	FOXK2	ENSG00000141568.21	ENST00000473637.6:ENST00000335255.10:ENST00000571160.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	80	2	1.76195	2.184075	2.6062	0.0252608	0.00148054	0.12011	0.0353633
chr18	2680820	2680920	6865116	0	+	0.39	(0.378,0.408]	chr18	679964	63	INTRON	INTRON	SMCHD1	ENSG00000101596.17	ENST00000320876.11:ENST00000688342.1:ENST00000684915.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	70	2	2.15574	2.18406	2.21238	0.0218124	0.00519611	0.11491	0.0654762
chr8	73868668	73868768	3972158	0	-	0.4	(0.378,0.408]	chr8	364247	378	INTRON	INTRON	ENSG00000258677:UBE2W	ENSG00000258677.2:ENSG00000104343.21	ENST00000358757.5:ENST00000602593.6:ENST00000517608.5:ENST00000650817.1:ENST00000422906.6:ENST00000419880.7:ENST00000651945.1:ENST00000519277.5:ENST00000519255.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	70	2	2.15574	2.18406	2.21238	0.0218124	0.00519611	0.11491	0.0654762
chr2	112663225	112663325	852248	0	+	0.45	(0.44,0.476]	chr2	95616	3	UTR3	UTR3:EXON_MRNA	SLC20A1	ENSG00000144136.11	ENST00000272542.8:ENST00000490674.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	102	2	2.05546	2.18405	2.31264	0.00467486	0.00316873	0.0631417	0.0503085
chr1	100053986	100054085	171764	0	+	0.333333	(0.32,0.35]	chr1	18603	36	INTRON	INTRON	ENSG00000283761:MFSD14A	ENSG00000283761.1:ENSG00000156875.14	ENST00000638792.1:ENST00000638968.1:ENST00000639040.1:ENST00000639037.1:ENST00000638779.1:ENST00000639171.1:ENST00000640238.1:ENST00000640357.1:ENST00000370152.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	97	2	1.81388	2.18404	2.5542	0.0371014	9.3945e-4	0.139201	0.0280187
chr12	112225447	112225546	5416131	0	-	0.363636	(0.35,0.378]	chr12	517437	56	INTRON	INTRON	HECTD4	ENSG00000173064.14	ENST00000550722.5:ENST00000377560.9:ENST00000682272.1:ENST00000550968.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	39	2	2.04358	2.184005	2.32443	0.0544216	0.0329533	0.164972	0.145171
chr13	99543262	99543362	5527304	0	+	0.36	(0.35,0.378]	chr13	528388	12	INTRON	INTRON	TM9SF2	ENSG00000125304.10	ENST00000642475.1:ENST00000376387.5	protein_coding	protein_coding	protein_coding	protein_coding	3	39	2	2.04358	2.184005	2.32443	0.0544216	0.0329533	0.164972	0.145171
chr3	125267225	125267325	1806019	0	-	0.37	(0.35,0.378]	chr3	181414	325	INTRON	INTRON	ZNF148	ENSG00000163848.20	ENST00000360647.9:ENST00000468369.5:ENST00000484491.5:ENST00000492394.5:ENST00000485866.5:ENST00000497929.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	39	2	2.04358	2.184005	2.32443	0.0544216	0.0329533	0.164972	0.145171
chr7	66750989	66751089	3325578	0	+	0.37	(0.35,0.378]	chr7	309233	98	INTRON	INTRON	RABGEF1	ENSG00000154710.18	ENST00000607882.5:ENST00000284957.9:ENST00000450873.6:ENST00000442563.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	39	2	2.04358	2.184005	2.32443	0.0544216	0.0329533	0.164972	0.145171
chr1	146951489	146951589	211707	0	+	0.42	(0.408,0.44]	chr1	23280	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NBPF12	ENSG00000268043.8	ENST00000617931.4:ENST00000611443.4:ENST00000617844.4	protein_coding	protein_coding	protein_coding	protein_coding	3	36	2	1.85305	2.183985	2.51492	0.0543543	0.0329839	0.182243	0.133816
chr1	224273361	224273459	644330	0	-	0.418367	(0.408,0.44]	chr1	76099	36	INTRON	INTRON	NVL	ENSG00000143748.18	ENST00000391875.6:ENST00000469968.5:ENST00000482491.5:ENST00000281701.11:ENST00000469075.5:ENST00000340871.8	protein_coding	protein_coding	protein_coding	protein_coding	3	36	2	1.85305	2.183985	2.51492	0.0543543	0.0329839	0.182243	0.133816
chr11	86038100	86038200	5014533	0	-	0.47	(0.44,0.476]	chr11	473022	61	INTRON	INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000630913.2:ENST00000528398.5:ENST00000356360.9:ENST00000534412.5:ENST00000531558.1:ENST00000531930.5:ENST00000532041.5:ENST00000525162.5:ENST00000528256.1:ENST00000528411.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	80	2	1.90375	2.183985	2.46422	0.0156406	0.00282908	0.101393	0.0491595
chr9	88405807	88405907	4152220	0	+	0.43	(0.408,0.44]	chr9	378721	160	INTRON	INTRON	SPIN1	ENSG00000106723.17	ENST00000485804.5:ENST00000469017.6:ENST00000375859.4:ENST00000462844.5:ENST00000485565.6:ENST00000483785.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	36	2	1.85305	2.183985	2.51492	0.0543543	0.0329839	0.182243	0.133816
chr17	82524899	82524999	6692656	0	+	0.42	(0.408,0.44]	chr17	654627	42	INTRON	INTRON	FOXK2	ENSG00000141568.21	ENST00000473637.6:ENST00000335255.10:ENST00000527313.6:ENST00000570585.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	134	2	1.73272	2.183915	2.63511	0.0113502	2.44595e-4	0.0886611	0.0138345
chr1	16328007	16328107	382375	0	-	0.37	(0.35,0.378]	chr1	44888	122	INTRON	INTRON	FBXO42	ENSG00000037637.11	ENST00000375592.8	protein_coding	protein_coding	protein_coding	protein_coding	5	54	2	1.64283	2.1839	2.72497	0.034896	0.0198266	0.148998	0.109608
chr4	2560735	2560835	1912757	0	+	0.36	(0.35,0.378]	chr4	191976	232	INTRON	INTRON	RNF4:FAM193A	ENSG00000063978.16:ENSG00000125386.16	ENST00000508235.1:ENST00000637812.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	88	2	2.01378	2.1839	2.35402	0.00952336	0.00596483	0.0863913	0.0674604
chr19	35624390	35624486	7055817	0	+	0.40625	(0.378,0.408]	chr19	704190	13	UTR3	UTR3:EXON_MRNA	HAUS5	ENSG00000249115.9	ENST00000203166.10:ENST00000424522.5:ENST00000428854.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	85	2	2.09688	2.18384	2.2708	0.00805155	0.00646593	0.0766625	0.073179
chr21	43746517	43746615	7413439	0	+	0.408163	(0.378,0.408]	chr21	755559	4	SS5_PROX	SS5_PROX:INTRON	PDXK	ENSG00000160209.19	ENST00000468090.5:ENST00000291565.9:ENST00000398085.7:ENST00000498040.5:ENST00000472777.5:ENST00000481512.5:ENST00000490666.5:ENST00000467908.1:ENST00000343528.10:ENST00000398078.7:ENST00000468392.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	57	2	1.41307	2.18383	2.95459	0.0510067	0.00957623	0.176593	0.0820838
chr3	10000020	10000119	1362102	0	+	0.414141	(0.408,0.44]	chr3	143402	58	INTRON	INTRON	EMC3-AS1	ENSG00000180385.9	ENST00000692142.1:ENST00000366264.6:ENST00000693066.1:ENST00000326237.3:ENST00000440568.1:ENST00000424904.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	8	82	2	1.42285	2.18383	2.94481	0.0421231	0.00110214	0.148082	0.03038
chr10	17698239	17698336	4399815	0	+	0.350515	(0.35,0.378]	chr10	406198	10	INTRON	INTRON	STAM	ENSG00000136738.15	ENST00000377524.8:ENST00000377500.1:ENST00000494250.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	66	2	1.42644	2.183775	2.94111	0.0390715	0.0104563	0.161228	0.0855102
chr11	3366645	3366744	4893722	0	-	0.393939	(0.378,0.408]	chr11	458671	42	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	ZNF195	ENSG00000005801.18	ENST00000528796.5:ENST00000399602.9:ENST00000354599.10:ENST00000343338.11:ENST00000620374.4:ENST00000649622.1:ENST00000429541.6:ENST00000005082.13:ENST00000526601.5:ENST00000438262.6:ENST00000528410.5:ENST00000528218.5:ENST00000529789.5:ENST00000525313.6:ENST00000533036.5:ENST00000529228.5:ENST00000529678.5:ENST00000528636.1:ENST00000427810.6:ENST00000534569.5:ENST00000524857.5:ENST00000530643.5:ENST00000618467.4:ENST00000330692.11	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	131	2	2.14745	2.1837600000000004	2.22007	0.00276839	0.0022373	0.0469265	0.0435144
chr5	146476710	146476808	2515805	0	+	0.367347	(0.35,0.378]	chr5	240338	48	INTRON	INTRON	TCERG1	ENSG00000113649.13	ENST00000507175.5:ENST00000296702.9:ENST00000679501.2:ENST00000394421.7:ENST00000549332.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	124	2	1.95039	2.183745	2.4171	0.0095436	8.92719e-4	0.082068	0.0273457
chr15	44561927	44562024	6015646	0	+	0.350515	(0.35,0.378]	chr15	573048	9	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	EIF3J	ENSG00000104131.13	ENST00000424492.7:ENST00000261868.10:ENST00000558353.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	39	2	1.82887	2.183715	2.53856	0.0584878	0.0326077	0.189395	0.133687
chr9	112327645	112327745	4317901	0	-	0.36	(0.35,0.378]	chr9	397079	294	INTRON	INTRON	PTBP3	ENSG00000119314.16	ENST00000334318.10:ENST00000458258.5:ENST00000374257.6:ENST00000374255.6:ENST00000343327.6:ENST00000487997.1:ENST00000210227.4:ENST00000450374.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	39	2	1.82887	2.183715	2.53856	0.0584878	0.0326077	0.189395	0.133687
chr3	14946584	14946679	1619451	0	-	0.284211	(0.28,0.32]	chr3	167396	5	EXON_LNCRNA	EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	FGD5-AS1	ENSG00000225733.7	ENST00000430166.5:ENST00000424349.1:ENST00000655923.1:ENST00000665449.1:ENST00000665738.1:ENST00000661022.1:ENST00000417835.1:ENST00000426200.1:ENST00000440079.1:ENST00000687714.1:ENST00000693748.1	lncRNA	lncRNA	lncRNA	lncRNA	6	90	2	2.14942	2.1837	2.21798	0.0143412	0.00901091	0.0966737	0.0851009
chr16	21444988	21445087	6460765	0	-	0.333333	(0.32,0.35]	chr16	623226	44	INTRON	INTRON	NPIPB3	ENSG00000169246.16	ENST00000545358.5:ENST00000543368.1:ENST00000544154.1	protein_coding	retained_intron	protein_coding	retained_intron:processed_transcript	8	105	2	1.77157	2.183695	2.59582	0.0193154	0.00178944	0.108861	0.0392749
chr5	6603637	6603714	2566467	0	-	0.441558	(0.44,0.476]	chr5	245884	1	SS5_PROX	SS5_PROX:INTRON	NSUN2	ENSG00000037474.15	ENST00000264670.11:ENST00000504374.5:ENST00000505892.5:ENST00000513888.5:ENST00000506139.5:ENST00000514127.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	56	2	1.62674	2.183685	2.74063	0.0253995	0.0176095	0.133676	0.105143
chr1	503455	503547	355595	0	-	0.358696	(0.35,0.378]	chr1	41004	1	INTRON	INTRON	ENSG00000237094	ENSG00000237094.12	ENST00000641303.1:ENST00000641063.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	9	112	2	2.0653	2.183625	2.30195	0.00473276	0.00377584	0.0633849	0.0540736
chr6	37172630	37172712	2855277	0	+	0.52439	(0.515,0.57]	chr6	269928	3	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PIM1	ENSG00000137193.14	ENST00000373509.6:ENST00000468243.5:ENST00000479509.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	60	2	2.01737	2.183625	2.34988	0.0352218	0.00194926	0.137535	0.0410995
chr1	1657898	1657998	360607	0	-	0.44	(0.408,0.44]	chr1	41964	4	SS3_PROX	SS3_PROX:INTRON	CDK11B	ENSG00000248333.9	ENST00000341832.11:ENST00000407249.7:ENST00000340677.9:ENST00000611150.3:ENST00000615951.4:ENST00000626918.2:ENST00000629289.2:ENST00000629312.2:ENST00000341028.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	59	2	1.8749	2.18354	2.49218	0.0264246	0.00855168	0.133676	0.0780217
chr3	172239578	172239677	1561555	0	+	0.434343	(0.408,0.44]	chr3	161570	21	INTRON	INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000469491.5:ENST00000336824.8:ENST00000416957.5:ENST00000443501.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	59	2	1.8749	2.18354	2.49218	0.0264246	0.00855168	0.133676	0.0780217
chrX	16739421	16739521	7626011	0	+	0.41	(0.408,0.44]	chrX	780887	28	INTRON	INTRON	SYAP1	ENSG00000169895.6	ENST00000380155.4	protein_coding	protein_coding	protein_coding	protein_coding	5	59	2	1.8749	2.18354	2.49218	0.0264246	0.00855168	0.133676	0.0780217
chr10	30335405	30335504	4587503	0	-	0.444444	(0.44,0.476]	chr10	422969	84	INTRON	INTRON	MTPAP	ENSG00000107951.15	ENST00000263063.9:ENST00000488290.5:ENST00000417581.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	58	2	2.1762	2.18349	2.19078	0.0226089	0.0092251	0.117489	0.0855292
chr21	43801479	43801577	7413742	0	+	0.540816	(0.515,0.57]	chr21	755659	2	INTRON	INTRON	RRP1	ENSG00000160214.13	ENST00000497547.2:ENST00000467112.5:ENST00000471909.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	25	228	2	1.90108	2.18349	2.4659	9.34856e-4	8.00648e-5	0.0280574	0.00745482
chr4	39724242	39724342	1953253	0	+	0.48	(0.476,0.515]	chr4	195630	255	INTRON	INTRON	UBE2K	ENSG00000078140.14	ENST00000510934.5:ENST00000261427.10:ENST00000438068.6:ENST00000513231.5:ENST00000503368.5:ENST00000445950.2:ENST00000510719.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	15	117	2	1.14294	2.1834350000000002	3.22393	0.0419598	3.84737e-4	0.161744	0.0182343
chr17	1381837	1381937	6699425	0	-	0.46	(0.44,0.476]	chr17	655552	117	INTRON	INTRON	YWHAE	ENSG00000108953.17	ENST00000264335.13:ENST00000571732.5:ENST00000573026.1:ENST00000573196.5:ENST00000575977.1:ENST00000469398.5:ENST00000486241.1:ENST00000489287.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	58	2	1.98146	2.183325	2.38519	0.0186013	0.012193	0.117264	0.0910127
chr4	143875909	143876009	2251194	0	-	0.4	(0.378,0.408]	chr4	219921	4	SS3_PROX	SS3_PROX:INTRON	GYPE	ENSG00000197465.14	ENST00000358615.9:ENST00000506264.5:ENST00000437468.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	73	2	2.13797	2.18328	2.22859	0.0124882	0.00763308	0.0923444	0.0777238
chr5	79637756	79637855	2398985	0	+	0.444444	(0.44,0.476]	chr5	231707	139	INTRON	INTRON	TENT2	ENSG00000164329.14	ENST00000423041.6:ENST00000504233.5:ENST00000453514.6:ENST00000428308.6:ENST00000296783.7	protein_coding	protein_coding	protein_coding	protein_coding	18	189	2	1.99547	2.18328	2.37109	8.77175e-4	8.72523e-4	0.0270796	0.0269807
chr20	5547562	5547660	7311686	0	-	0.438776	(0.408,0.44]	chr20	744503	33	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	GPCPD1	ENSG00000125772.14	ENST00000379019.7:ENST00000481038.5:ENST00000418646.5:ENST00000462080.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	12	120	2	1.82641	2.183275	2.54014	0.003836	0.00255945	0.0562562	0.0450085
chr11	34067742	34067842	4767812	0	+	0.49	(0.476,0.515]	chr11	440959	40	INTRON	INTRON	CAPRIN1	ENSG00000135387.21	ENST00000341394.9:ENST00000528856.5:ENST00000389645.7:ENST00000534042.5:ENST00000534825.5:ENST00000532820.5:ENST00000530820.5:ENST00000529307.1:ENST00000526494.5:ENST00000532755.5:ENST00000533641.5:ENST00000530008.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	36	2	2.13304	2.183195	2.23335	0.0634557	0.024866	0.177047	0.132101
chr3	32738885	32738984	1393665	0	+	0.40404	(0.378,0.408]	chr3	145926	10	INTRON	INTRON	CNOT10	ENSG00000182973.20	ENST00000331889.10:ENST00000328834.10:ENST00000435630.5:ENST00000454516.7:ENST00000416457.5:ENST00000430408.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	106	2	1.7927	2.1831050000000003	2.57351	0.0163057	7.32287e-4	0.101571	0.0246502
chr10	50408872	50408972	4618534	0	-	0.39	(0.378,0.408]	chr10	425422	642	INTRON	INTRON	SGMS1	ENSG00000198964.14	ENST00000429490.5:ENST00000361781.7:ENST00000619438.4:ENST00000492601.2:ENST00000609445.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	14	138	2	1.33671	2.1831	3.02949	0.0288426	1.73068e-4	0.1274	0.0114086
chr1	8767525	8767625	373283	0	-	0.47	(0.44,0.476]	chr1	43549	138	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000656437.1:ENST00000659924.1	protein_coding	protein_coding	protein_coding	protein_coding	8	89	2	1.75999	2.183095	2.6062	0.0176116	0.00148054	0.105143	0.0353633
chr1	160316305	160316404	572042	0	-	0.393939	(0.378,0.408]	chr1	69341	18	INTRON	INTRON	COPA	ENSG00000122218.17	ENST00000241704.8:ENST00000696204.1:ENST00000696203.1:ENST00000696202.1:ENST00000649963.1:ENST00000696208.1:ENST00000696207.1:ENST00000696206.1:ENST00000649676.1:ENST00000368069.7:ENST00000647693.1:ENST00000649787.1:ENST00000650154.1:ENST00000647799.1:ENST00000648805.1:ENST00000647683.1:ENST00000649231.1:ENST00000648501.1:ENST00000696209.1:ENST00000696210.1:ENST00000696211.1:ENST00000647899.1:ENST00000696212.1:ENST00000696214.1:ENST00000696213.1:ENST00000696215.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	47	2	2.14029	2.183095	2.2259	0.0662381	0.0106742	0.181924	0.0917199
chr17	31950779	31950878	6595815	0	+	0.555556	(0.515,0.57]	chr17	641554	27	INTRON	INTRON	SUZ12	ENSG00000178691.11	ENST00000322652.10:ENST00000580398.1	protein_coding	protein_coding	protein_coding	protein_coding	9	88	2	2.16572	2.1830749999999997	2.20043	0.00392045	0.0029374	0.0570863	0.0483262
chr13	25304344	25304443	5457191	0	+	0.30303	(0.28,0.32]	chr13	522871	8	INTRON	INTRON	NUP58	ENSG00000139496.17	ENST00000481980.2:ENST00000490231.6:ENST00000695571.1:ENST00000477876.2:ENST00000695572.1:ENST00000463407.6:ENST00000695573.1:ENST00000381736.8:ENST00000695583.1:ENST00000465068.5:ENST00000460326.5:ENST00000480187.5:ENST00000466694.6:ENST00000381718.8:ENST00000695575.1:ENST00000695574.1:ENST00000495460.2:ENST00000381747.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	74	2	2.14534	2.183015	2.22069	0.0243177	0.0117054	0.12011	0.0962115
chr3	23850381	23850481	1388174	0	+	0.32	(0.28,0.32]	chr3	145385	385	INTRON	INTRON	UBE2E1	ENSG00000170142.12	ENST00000306627.8:ENST00000346855.7:ENST00000495141.5:ENST00000442670.5:ENST00000424381.5:ENST00000467766.5:ENST00000475680.5:ENST00000452012.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	74	2	2.14534	2.183015	2.22069	0.0243177	0.0117054	0.12011	0.0962115
chr4	32066878	32066977	1942117	0	+	0.282828	(0.28,0.32]	chr4	194727	687	INTRON	INTRON	LINC02506	ENSG00000251129.3	ENST00000662669.1:ENST00000665582.2:ENST00000667252.2:ENST00000660373.2:ENST00000684849.1:ENST00000513211.2:ENST00000659613.1:ENST00000657576.1:ENST00000686730.1:ENST00000685407.1:ENST00000685455.1:ENST00000655951.1	lncRNA	lncRNA	lncRNA	lncRNA	5	74	2	2.06884	2.1829599999999996	2.29708	0.0195087	0.0152581	0.109483	0.108569
chr5	53938519	53938619	2617189	0	-	0.55	(0.515,0.57]	chr5	248835	265	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	37	2	1.67758	2.182955	2.68833	0.0471728	0.0184931	0.168737	0.108861
chr19	19421816	19421916	7035507	0	+	0.5	(0.476,0.515]	chr19	701433	154	INTRON	INTRON	GATAD2A	ENSG00000167491.18	ENST00000494516.6:ENST00000360315.7:ENST00000609040.5:ENST00000417582.6:ENST00000683918.1:ENST00000448576.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	11	120	2	1.72827	2.182935	2.6376	0.00969651	6.87765e-4	0.0874888	0.0240091
chr6	167830926	167831026	3034377	0	+	0.39	(0.378,0.408]	chr6	282711	26	INTRON	INTRON	AFDN	ENSG00000130396.21	ENST00000683244.1:ENST00000400825.8:ENST00000351017.9:ENST00000344191.8:ENST00000392112.5:ENST00000392108.7:ENST00000400824.8:ENST00000400822.7:ENST00000447894.6:ENST00000366809.6:ENST00000366806.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	94	2	1.41201	2.1829	2.95379	0.0550809	2.62263e-4	0.165463	0.0143317
chr19	969695	969794	6992937	0	+	0.545455	(0.515,0.57]	chr19	692435	8	INTRON	INTRON	ARID3A	ENSG00000116017.11	ENST00000263620.8:ENST00000587532.5	protein_coding	protein_coding	protein_coding	protein_coding	3	31	2	1.7074	2.18287	2.65834	0.0779432	0.0187418	0.196685	0.117523
chr7	101938215	101938315	3367575	0	+	0.56	(0.515,0.57]	chr7	315229	52	INTRON	INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000497815.5:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000558469.5:ENST00000560541.5:ENST00000558836.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	31	2	1.7074	2.18287	2.65834	0.0779432	0.0187418	0.196685	0.117523
chr8	140960815	140960914	4079672	0	-	0.555556	(0.515,0.57]	chr8	370582	61	INTRON	INTRON	PTK2	ENSG00000169398.20	ENST00000696786.1:ENST00000522684.5:ENST00000395218.3:ENST00000521059.5:ENST00000519993.5:ENST00000340930.7:ENST00000524357.5:ENST00000521791.5:ENST00000523067.5:ENST00000520828.5:ENST00000519881.5:ENST00000520892.5:ENST00000523803.5:ENST00000521907.5:ENST00000517453.5:ENST00000520045.5:ENST00000521332.5:ENST00000524040.5:ENST00000523679.1:ENST00000524257.5:ENST00000523797.1:ENST00000519635.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	31	2	1.7074	2.18287	2.65834	0.0779432	0.0187418	0.196685	0.117523
chr17	44064529	44064625	6778374	0	-	0.5	(0.476,0.515]	chr17	668129	2	INTRON	INTRON	LSM12	ENSG00000161654.10	ENST00000591247.6:ENST00000293406.8:ENST00000585388.2	protein_coding	protein_coding	protein_coding	protein_coding	6	66	2	1.78315	2.18284	2.58253	0.0215899	0.00600101	0.123836	0.0674604
chr1	284875	284974	353444	0	-	0.484848	(0.476,0.515]	chr1	40903	157	INTRON	INTRON	ENSG00000228463	ENSG00000228463.10	ENST00000441866.2:ENST00000424587.7	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	3	36	2	1.79693	2.182805	2.56868	0.0649782	0.0256676	0.179417	0.133676
chr12	119713110	119713202	5430585	0	-	0.5	(0.476,0.515]	chr12	518839	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CIT	ENSG00000122966.17	ENST00000392521.7:ENST00000261833.11:ENST00000677438.1:ENST00000677993.1:ENST00000678087.1:ENST00000678652.1:ENST00000676849.1:ENST00000678677.1:ENST00000545913.6:ENST00000679249.1:ENST00000679120.1:ENST00000677812.1:ENST00000677849.1:ENST00000679285.1:ENST00000677738.1:ENST00000676693.1:ENST00000678236.1:ENST00000678494.1:ENST00000612548.4:ENST00000392520.2:ENST00000537607.5:ENST00000676833.1:ENST00000543324.2:ENST00000543239.1:ENST00000536008.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	36	2	1.79693	2.182805	2.56868	0.0649782	0.0256676	0.179417	0.133676
chr16	74595473	74595573	6525216	0	-	0.51	(0.476,0.515]	chr16	631842	323	INTRON	INTRON	GLG1	ENSG00000090863.12	ENST00000205061.9:ENST00000422840.7:ENST00000447066.6:ENST00000562090.5:ENST00000567951.5:ENST00000627032.2:ENST00000565260.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	36	2	1.79693	2.182805	2.56868	0.0649782	0.0256676	0.179417	0.133676
chr16	88660419	88660519	6539297	0	-	0.49	(0.476,0.515]	chr16	633748	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	MVD	ENSG00000167508.12	ENST00000301012.8:ENST00000569177.5:ENST00000567064.5:ENST00000568133.5:ENST00000563785.5:ENST00000568709.5:ENST00000563170.5:ENST00000562651.5:ENST00000565610.5:ENST00000563463.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	36	2	1.79693	2.182805	2.56868	0.0649782	0.0256676	0.179417	0.133676
chr2	10664238	10664337	1066147	0	-	0.494949	(0.476,0.515]	chr2	113760	8	INTRON	INTRON	NOL10	ENSG00000115761.17	ENST00000695464.1:ENST00000695470.1:ENST00000695467.1:ENST00000695468.1:ENST00000695469.1:ENST00000381685.10:ENST00000695471.1:ENST00000345985.7:ENST00000538384.5:ENST00000695472.1:ENST00000695473.1:ENST00000695475.1:ENST00000695476.1:ENST00000695477.1:ENST00000695478.1:ENST00000695479.1:ENST00000431319.2:ENST00000695480.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	36	2	1.79693	2.182805	2.56868	0.0649782	0.0256676	0.179417	0.133676
chr20	37087494	37087594	7339485	0	-	0.51	(0.476,0.515]	chr20	747929	51	INTRON	INTRON	RBL1	ENSG00000080839.12	ENST00000373664.8:ENST00000344359.7:ENST00000527999.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	36	2	1.79693	2.182805	2.56868	0.0649782	0.0256676	0.179417	0.133676
chr8	47814965	47815064	3944228	0	-	0.50505	(0.476,0.515]	chr8	361605	73	INTRON	INTRON	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7	protein_coding	protein_coding	protein_coding	protein_coding	3	36	2	1.79693	2.182805	2.56868	0.0649782	0.0256676	0.179417	0.133676
chr11	65498579	65498679	4806129	0	+	0.48	(0.476,0.515]	chr11	446569	10	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	MALAT1	ENSG00000251562.9	ENST00000619449.2:ENST00000534336.1:ENST00000688218.1:ENST00000689729.1:ENST00000693503.1:ENST00000692086.1:ENST00000685846.1:ENST00000690116.1	lncRNA	lncRNA	lncRNA	lncRNA	10	113	2	1.87544	2.182705	2.48997	0.0113658	5.57267e-4	0.0886611	0.021494
chr1	23027686	23027786	43840	0	+	0.44	(0.408,0.44]	chr1	5252	74	INTRON	INTRON	KDM1A	ENSG00000004487.18	ENST00000692214.1:ENST00000686934.1:ENST00000689853.1:ENST00000465864.2:ENST00000691256.1:ENST00000688122.1:ENST00000692056.1:ENST00000692853.1:ENST00000689366.1:ENST00000686270.1:ENST00000685102.1:ENST00000690627.1:ENST00000686771.1:ENST00000692209.1:ENST00000686339.1:ENST00000691813.1:ENST00000693156.1:ENST00000688235.1:ENST00000692975.1:ENST00000687202.1:ENST00000691682.1:ENST00000691404.1:ENST00000691694.1:ENST00000688680.1:ENST00000356634.7:ENST00000400181.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	15	166	2	2.11194	2.1826800000000004	2.25342	0.00306831	3.87306e-4	0.0494933	0.0177751
chrX	41340909	41341005	7645721	0	+	0.3125	(0.28,0.32]	chrX	782504	2	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DDX3X	ENSG00000215301.11	ENST00000625837.2:ENST00000626301.2:ENST00000629785.2:ENST00000630255.2:ENST00000630370.2:ENST00000630858.2:ENST00000629496.3:ENST00000610559.5:ENST00000611546.2:ENST00000478993.5:ENST00000457138.7:ENST00000644876.2:ENST00000399959.7:ENST00000644074.1:ENST00000645338.1:ENST00000646196.1:ENST00000642793.1:ENST00000646940.1:ENST00000644307.1:ENST00000645561.1:ENST00000645080.1:ENST00000642597.1:ENST00000642722.1:ENST00000644109.1:ENST00000644958.1:ENST00000646122.1:ENST00000644513.1:ENST00000645589.1:ENST00000441189.4:ENST00000646822.1:ENST00000631641.2:ENST00000615742.4:ENST00000647219.1:ENST00000646223.1:ENST00000643963.1:ENST00000646319.1:ENST00000645783.1:ENST00000642624.1:ENST00000542215.5:ENST00000644073.1:ENST00000644677.1:ENST00000615313.5:ENST00000642322.1:ENST00000622198.5:ENST00000645120.1:ENST00000646107.1:ENST00000646627.1:ENST00000645253.1:ENST00000642589.1:ENST00000645380.1:ENST00000646390.1:ENST00000642424.1:ENST00000642161.1:ENST00000645574.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	28	398	2	1.95153	2.182665	2.4138	0.00262003	8.03948e-5	0.0455834	0.00748271
chr1	150550812	150550912	223157	0	+	0.58	(0.57,1]	chr1	25254	3	EXON_LNCRNA	EXON_LNCRNA:INTRON	ADAMTSL4	ENSG00000143382.16	ENST00000369039.9:ENST00000271643.9:ENST00000369041.9:ENST00000483335.1:ENST00000674043.1:ENST00000674058.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	34	188	2	2.07914	2.18262	2.2861	9.93451e-5	2.49667e-5	0.00902913	0.00392542
chr16	11912099	11912198	6446373	0	-	0.535354	(0.515,0.57]	chr16	621130	81	INTRON	INTRON	GSPT1	ENSG00000103342.13	ENST00000434724.7:ENST00000439887.6:ENST00000420576.6:ENST00000568849.5:ENST00000562169.1	protein_coding	protein_coding	protein_coding	protein_coding	5	52	2	1.60221	2.1826049999999997	2.763	0.0581855	0.00257143	0.188704	0.045134
chr19	4437200	4437298	7002125	0	+	0.561224	(0.515,0.57]	chr19	694580	33	INTRON	INTRON	CHAF1A	ENSG00000167670.16	ENST00000301280.10	protein_coding	protein_coding	protein_coding	protein_coding	5	52	2	1.60221	2.1826049999999997	2.763	0.0581855	0.00257143	0.188704	0.045134
chr4	67660267	67660367	2154044	0	-	0.47	(0.44,0.476]	chr4	212133	107	INTRON	INTRON	UBA6	ENSG00000033178.13	ENST00000322244.10	protein_coding	protein_coding	protein_coding	protein_coding	15	167	2	1.98093	2.1826	2.38427	0.00392739	2.46584e-4	0.0548259	0.0139149
chr12	132801566	132801666	5449937	0	-	0.58	(0.57,1]	chr12	522064	4	SS5_PROX	SS5_PROX:INTRON	GOLGA3	ENSG00000090615.16	ENST00000204726.9:ENST00000450791.8:ENST00000693666.1:ENST00000688114.1:ENST00000687190.1:ENST00000690511.1:ENST00000685283.1:ENST00000691696.1:ENST00000691636.1:ENST00000690897.1:ENST00000690465.1:ENST00000456883.7:ENST00000692253.1:ENST00000687502.1:ENST00000688772.1:ENST00000687479.1:ENST00000690709.1:ENST00000545875.4:ENST00000688251.1:ENST00000690573.1:ENST00000685195.1:ENST00000686425.1:ENST00000693437.1:ENST00000692831.1:ENST00000688068.1:ENST00000692951.1:ENST00000689441.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	25	142	2	1.94085	2.18255	2.42425	9.5109e-4	1.25467e-5	0.0282205	0.00264429
chr4	108620895	108620987	2018286	0	+	0.5	(0.476,0.515]	chr4	200688	3	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	RPL34	ENSG00000109475.17	ENST00000502534.5:ENST00000394667.8:ENST00000394665.5:ENST00000503574.1:ENST00000506397.5:ENST00000394668.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	81	2	1.36472	2.182535	3.00035	0.0467985	0.00109036	0.167716	0.0303873
chr3	186931694	186931794	1586184	0	+	0.57	(0.515,0.57]	chr3	164313	3	SS5_PROX	SS5_PROX:INTRON	ST6GAL1	ENSG00000073849.16	ENST00000676786.1:ENST00000463542.1:ENST00000169298.8:ENST00000457772.6:ENST00000455441.5:ENST00000427315.5:ENST00000677292.1:ENST00000468614.1:ENST00000458216.5:ENST00000430309.5:ENST00000417392.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	76	2	1.82788	2.1824649999999997	2.53705	0.0123396	0.00186194	0.0914341	0.039946
chr4	468082	468182	2092860	0	-	0.52	(0.515,0.57]	chr4	206783	233	INTRON	INTRON	ABCA11P:ZNF721	ENSG00000251595.7:ENSG00000182903.16	ENST00000451020.6:ENST00000514396.5:ENST00000507854.1:ENST00000515578.5:ENST00000506646.5:ENST00000507078.1:ENST00000511833.3:ENST00000338977.5:ENST00000505900.1	protein_coding	protein_coding	protein_coding:transcribed_processed_pseudogene	protein_coding:nonsense_mediated_decay:processed_transcript	8	76	2	1.82788	2.1824649999999997	2.53705	0.0123396	0.00186194	0.0914341	0.039946
chr19	11020390	11020485	7016183	0	+	0.442105	(0.44,0.476]	chr19	697285	3	INTRON	INTRON	SMARCA4	ENSG00000127616.20	ENST00000644737.1:ENST00000642726.1:ENST00000646484.1:ENST00000643549.1:ENST00000643296.1:ENST00000647230.1:ENST00000642628.1:ENST00000646510.1:ENST00000429416.8:ENST00000344626.10:ENST00000646693.2:ENST00000645460.1:ENST00000541122.6:ENST00000589677.5:ENST00000444061.8:ENST00000590574.6:ENST00000591545.6:ENST00000643995.1:ENST00000644327.1:ENST00000644065.1:ENST00000644963.1:ENST00000643208.1:ENST00000645061.1:ENST00000642350.1:ENST00000644290.1:ENST00000647268.1:ENST00000643857.1:ENST00000644267.1:ENST00000646183.1:ENST00000646746.1:ENST00000643534.1:ENST00000646513.1:ENST00000646593.1:ENST00000645648.1:ENST00000592604.6:ENST00000586122.5:ENST00000587988.5:ENST00000591595.5:ENST00000646236.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	92	2	1.83459	2.1824	2.53021	0.0198542	8.87528e-4	0.109608	0.0271952
chr18	36044837	36044936	6963318	0	-	0.343434	(0.32,0.35]	chr18	689076	36	INTRON	INTRON	RPRD1A	ENSG00000141425.18	ENST00000399022.9:ENST00000590898.5:ENST00000357384.8:ENST00000588737.5:ENST00000589050.1:ENST00000592674.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:nonsense_mediated_decay	4	58	2	2.01768	2.18239	2.3471	0.0361337	0.0156413	0.152563	0.101393
chr15	74462441	74462519	6061580	0	+	0.179487	[0,0.28]	chr15	577113	1	SS5_PROX	SS5_PROX:INTRON	UBL7-DT	ENSG00000247240.9	ENST00000657781.2:ENST00000659591.2:ENST00000499217.6:ENST00000666989.2:ENST00000564137.5:ENST00000691484.1:ENST00000664892.1:ENST00000693152.1:ENST00000564621.2:ENST00000567286.5:ENST00000568853.1:ENST00000670462.1	lncRNA	lncRNA	lncRNA	lncRNA	4	66	2	1.73226	2.18232	2.63238	0.0524108	0.0259691	0.160429	0.133676
chr13	27144892	27144992	5566297	0	-	0.46	(0.44,0.476]	chr13	532032	279	INTRON	INTRON	USP12	ENSG00000152484.14	ENST00000282344.11	protein_coding	protein_coding	protein_coding	protein_coding	6	68	2	2.13779	2.18215	2.22651	0.0264596	0.00376161	0.122506	0.0562562
chr12	121214360	121214460	5236726	0	+	0.37	(0.35,0.378]	chr12	497064	16	EXON_MRNA	EXON_MRNA:INTRON	P2RX4	ENSG00000135124.16	ENST00000359949.11:ENST00000543430.5:ENST00000337233.9:ENST00000543984.5:ENST00000499638.6:ENST00000543318.5:ENST00000540930.5:ENST00000538701.5:ENST00000542067.5:ENST00000541187.5:ENST00000538417.2:ENST00000314442.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	64	2	1.91706	2.182035	2.44701	0.026412	0.00900997	0.122506	0.0851009
chr7	141749312	141749411	3440212	0	+	0.414141	(0.408,0.44]	chr7	320695	29	INTRON	INTRON	SSBP1	ENSG00000106028.11	ENST00000612337.4:ENST00000265304.11:ENST00000498107.5:ENST00000469123.5:ENST00000467681.5:ENST00000465582.5:ENST00000465167.1:ENST00000484178.5:ENST00000481508.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	106	2	1.47066	2.18202	2.89338	0.0457145	1.20672e-4	0.149888	0.00938389
chr2	235497946	235498046	1041374	0	+	0.47	(0.44,0.476]	chr2	111217	27	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	43	2	1.75627	2.182005	2.60774	0.0380723	0.0255874	0.157702	0.120269
chr20	3891043	3891143	7226909	0	+	0.46	(0.44,0.476]	chr20	734469	4	SS3_PROX	SS3_PROX:INTRON	PANK2	ENSG00000125779.24	ENST00000497424.5:ENST00000316562.9:ENST00000495692.5:ENST00000610179.7:ENST00000643504.2:ENST00000336066.8:ENST00000646394.1:ENST00000621507.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	58	2	1.7651	2.18199	2.59888	0.039388	0.00487719	0.143072	0.0640618
chr2	176285584	176285684	925374	0	+	0.33	(0.32,0.35]	chr2	101669	148	INTRON	INTRON	MTX2	ENSG00000128654.14	ENST00000420864.5:ENST00000249442.11:ENST00000423461.6:ENST00000443241.5:ENST00000452865.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	79	2	2.18092	2.1819550000000003	2.18299	0.0256608	0.00505063	0.120491	0.0646039
chr1	36239030	36239130	73077	0	+	0.54	(0.515,0.57]	chr1	9371	132	INTRON	INTRON	THRAP3	ENSG00000054118.15	ENST00000469141.6:ENST00000648638.1:ENST00000354618.10	protein_coding	protein_coding	protein_coding	protein_coding	5	50	2	1.97035	2.18193	2.39351	0.0195832	0.0100431	0.109483	0.0881096
chrX	138978818	138978918	7901351	0	-	0.26	[0,0.28]	chrX	804239	1138	INTRON	INTRON	FGF13	ENSG00000129682.16	ENST00000441825.8:ENST00000626909.2:ENST00000436198.5:ENST00000455663.5:ENST00000448673.1:ENST00000421460.1	protein_coding	protein_coding	protein_coding	protein_coding	3	52	2	2.15457	2.18192	2.20927	0.0794763	0.0269306	0.19979	0.135288
chr21	6256946	6257046	7425208	0	-	0.37	(0.35,0.378]	chr21	757453	17	INTRON	INTRON	ENSG00000275496	ENSG00000275496.4	ENST00000621924.4:ENST00000617746.4:ENST00000624446.1:ENST00000623405.3:ENST00000623575.3:ENST00000623506.1	lncRNA	lncRNA	lncRNA	lncRNA	3	40	2	1.87717	2.18187	2.48657	0.0555068	0.032907	0.165463	0.145164
chr7	102127177	102127277	3369474	0	+	0.43	(0.408,0.44]	chr7	315274	15	INTRON	INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000560541.5:ENST00000558836.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	67	2	1.7519	2.1818	2.6117	0.0239555	0.00555224	0.129259	0.0648867
chr2	39111039	39111139	1102238	0	-	0.48	(0.476,0.515]	chr2	118304	127	INTRON	INTRON	SOS1	ENSG00000115904.15	ENST00000692089.1:ENST00000402219.8:ENST00000690876.1:ENST00000395038.6:ENST00000691229.1:ENST00000689668.1:ENST00000690679.1:ENST00000461545.2:ENST00000451331.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	58	2	1.63838	2.181725	2.72507	0.0555021	0.0029369	0.165463	0.0496505
chr2	174367529	174367629	1271063	0	-	0.51	(0.476,0.515]	chr2	134338	86	INTRON	INTRON	CIR1	ENSG00000138433.16	ENST00000342016.8:ENST00000377973.4	protein_coding	protein_coding	protein_coding	protein_coding	6	70	2	1.83961	2.181705	2.5238	0.0314489	0.00218334	0.13151	0.0435144
chr11	64110357	64110457	4964073	0	-	0.56	(0.515,0.57]	chr11	467267	947	INTRON	INTRON	MACROD1	ENSG00000133315.12	ENST00000255681.7:ENST00000675777.1:ENST00000543422.5:ENST00000545464.5:ENST00000542359.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	42	2	2.03361	2.18164	2.32967	0.0325854	0.0133671	0.145164	0.0946278
chr11	103084826	103084926	5026505	0	-	0.53	(0.515,0.57]	chr11	473953	11	INTRON	INTRON	DCUN1D5	ENSG00000137692.12	ENST00000260247.10:ENST00000527260.5:ENST00000531571.5:ENST00000531543.1:ENST00000529281.5:ENST00000529294.5:ENST00000527576.5:ENST00000527779.1:ENST00000525420.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	42	2	2.03361	2.18164	2.32967	0.0325854	0.0133671	0.145164	0.0946278
chr6	26130011	26130111	2837052	0	+	0.44	(0.408,0.44]	chr6	266010	49	INTRON	INTRON	H2AC6	ENSG00000180573.10	ENST00000314088.6:ENST00000602637.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	92	2	1.94531	2.181635	2.41796	0.0136489	0.0015483	0.0949306	0.0363194
chr11	9193981	9194081	4908351	0	-	0.43	(0.408,0.44]	chr11	460085	3	SS3_PROX	SS3_PROX:INTRON	DENND5A	ENSG00000184014.9	ENST00000328194.8:ENST00000681203.1:ENST00000530780.2:ENST00000679999.1:ENST00000680470.1:ENST00000680599.1:ENST00000680554.1:ENST00000679745.1:ENST00000680252.1:ENST00000681425.1:ENST00000681158.1:ENST00000679460.1:ENST00000679568.1:ENST00000679446.1:ENST00000680294.1:ENST00000680742.1:ENST00000680885.1:ENST00000680576.1:ENST00000530044.5:ENST00000526707.5:ENST00000681173.1:ENST00000530867.2:ENST00000681915.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	67	2	1.58026	2.181575	2.78289	0.0444624	0.0022785	0.149888	0.0437013
chr6	68673723	68673823	2886703	0	+	0.35	(0.32,0.35]	chr6	273730	339	INTRON	INTRON	ADGRB3	ENSG00000135298.15	ENST00000370598.6:ENST00000684661.1:ENST00000546190.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	50	2	1.67393	2.18157	2.68921	0.0496128	0.0230336	0.174685	0.118056
chr12	116175072	116175172	5424520	0	-	0.27	[0,0.28]	chr12	518266	2	SS3_PROX	SS3_PROX:INTRON	MED13L:ENSG00000258337	ENSG00000123066.9:ENSG00000258337.1	ENST00000281928.9:ENST00000650226.1:ENST00000548743.2:ENST00000647567.1:ENST00000551197.2:ENST00000549373.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	5	85	2	2.1357	2.181565	2.22743	0.0338175	0.0097118	0.134476	0.0875962
chr7	128540528	128540628	3407449	0	+	0.32	(0.28,0.32]	chr7	318333	64	INTRON	INTRON	ENSG00000280828	ENSG00000280828.1	ENST00000479267.2	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	6	71	2	1.63236	2.181565	2.73077	0.0273014	0.0220748	0.136494	0.115395
chr21	6661664	6661763	7425790	0	-	0.363636	(0.35,0.378]	chr21	757499	17	INTRON	INTRON	ENSG00000280145	ENSG00000280145.3	ENST00000625185.3:ENST00000624846.3:ENST00000623313.1:ENST00000624965.1	lncRNA	lncRNA	lncRNA	lncRNA	13	159	2	2.16208	2.18155	2.20102	0.00279924	0.00110896	0.046981	0.0305063
chr17	31109364	31109463	6591277	0	+	0.393939	(0.378,0.408]	chr17	641053	136	INTRON	INTRON	NF1	ENSG00000196712.20	ENST00000696138.1:ENST00000356175.7:ENST00000487476.5:ENST00000691014.1:ENST00000358273.9:ENST00000431387.8:ENST00000579081.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	52	2	1.76	2.18148	2.60296	0.0267851	0.023484	0.128531	0.123349
chr15	58061573	58061672	6187503	0	-	0.282828	(0.28,0.32]	chr15	589794	31	INTRON	INTRON	ALDH1A2	ENSG00000128918.15	ENST00000537372.5:ENST00000249750.9:ENST00000347587.7:ENST00000430119.6:ENST00000558231.5:ENST00000558595.5:ENST00000558239.5:ENST00000557967.5:ENST00000558073.5:ENST00000559297.5:ENST00000560122.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	76	2	1.91611	2.181455	2.4468	0.0539102	0.0037095	0.164153	0.0561833
chr10	22711935	22712035	4580478	0	-	0.38	(0.378,0.408]	chr10	422046	174	INTRON	INTRON	PIP4K2A	ENSG00000150867.14	ENST00000376573.9:ENST00000545335.5	protein_coding	protein_coding	protein_coding	protein_coding	7	83	2	2.17296	2.18145	2.18994	0.0110512	0.00448961	0.0873897	0.0612035
chr1	23287388	23287488	399170	0	-	0.42	(0.408,0.44]	chr1	47822	62	EXON_LNCRNA	EXON_LNCRNA	LINC01355	ENSG00000261326.4	ENST00000655082.1:ENST00000666981.1	lncRNA	lncRNA	lncRNA	lncRNA	11	123	2	2.06888	2.1814400000000003	2.294	0.00864911	6.02981e-4	0.0787025	0.0223465
chr12	68646205	68646304	5161561	0	+	0.343434	(0.32,0.35]	chr12	488591	47	INTRON	INTRON	RAP1B	ENSG00000127314.18	ENST00000460800.5:ENST00000393436.9:ENST00000250559.14:ENST00000425247.6:ENST00000501412.2:ENST00000450214.6:ENST00000463493.5:ENST00000537460.5:ENST00000341355.9:ENST00000538283.5:ENST00000541167.5:ENST00000422358.6:ENST00000489473.6:ENST00000545270.5:ENST00000538980.5:ENST00000543393.5:ENST00000542018.5:ENST00000540209.5:ENST00000378985.7:ENST00000453560.6:ENST00000534899.5:ENST00000542145.5:ENST00000539091.5:ENST00000535492.5:ENST00000540781.5:ENST00000485252.6:ENST00000538877.5:ENST00000541386.5:ENST00000543697.5:ENST00000545720.6:ENST00000541216.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	68	2	2.1362	2.181375	2.22655	0.0291083	0.00823133	0.128029	0.0812969
chr18	9179486	9179585	6869358	0	+	0.464646	(0.44,0.476]	chr18	680561	413	INTRON	INTRON	ANKRD12	ENSG00000101745.17	ENST00000585234.5:ENST00000262126.9:ENST00000577992.1:ENST00000540578.6:ENST00000581635.5:ENST00000400020.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	80	2	2.07016	2.1813700000000003	2.29258	0.0151815	0.00279559	0.0994339	0.0488779
chr12	132820100	132820200	5450133	0	-	0.51	(0.476,0.515]	chr12	522103	29	INTRON	INTRON	GOLGA3	ENSG00000090615.16	ENST00000204726.9:ENST00000450791.8:ENST00000688114.1:ENST00000691696.1:ENST00000691636.1:ENST00000690897.1:ENST00000456883.7:ENST00000545875.4:ENST00000688251.1:ENST00000692951.1:ENST00000686751.1:ENST00000685580.1:ENST00000687165.1:ENST00000692384.1:ENST00000685120.1:ENST00000689813.1:ENST00000693112.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	74	2	1.28655	2.18128	3.07601	0.075974	5.95211e-4	0.194842	0.0221865
chr19	21179543	21179642	7040338	0	+	0.454545	(0.44,0.476]	chr19	701956	37	INTRON	INTRON	ZNF431	ENSG00000196705.8	ENST00000600692.5:ENST00000599296.5:ENST00000594425.5:ENST00000311048.11:ENST00000598331.1	protein_coding	protein_coding	protein_coding	protein_coding	19	203	2	1.70212	2.18128	2.66044	0.00550691	6.77244e-5	0.0648867	0.00682191
chr12	53473092	53473190	5143113	0	+	0.530612	(0.515,0.57]	chr12	485448	9	INTRON	INTRON	PCBP2	ENSG00000197111.16	ENST00000546463.6:ENST00000437231.5:ENST00000447282.5:ENST00000359282.9:ENST00000549863.5:ENST00000359462.9:ENST00000552296.6:ENST00000552819.5:ENST00000455667.7:ENST00000439930.7:ENST00000548933.5:ENST00000562264.5:ENST00000550585.5:ENST00000553064.6:ENST00000547859.2:ENST00000547048.5:ENST00000550733.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	68	2	2.07721	2.1812750000000003	2.28534	0.0067022	0.0061678	0.0738715	0.067653
chr7	121198426	121198526	3395753	0	+	0.47	(0.44,0.476]	chr7	317781	484	INTRON	INTRON	CPED1	ENSG00000106034.18	ENST00000310396.10:ENST00000450913.6:ENST00000423795.5:ENST00000466055.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	123	2	2.17708	2.181265	2.18545	0.00336887	0.00161833	0.0516668	0.0369252
chr5	62531285	62531383	2364218	0	+	0.459184	(0.44,0.476]	chr5	227979	1	INTRON	INTRON	IPO11	ENSG00000086200.17	ENST00000424533.5:ENST00000325324.11:ENST00000409296.7:ENST00000511713.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	58	2	1.71574	2.181215	2.64669	0.045256	0.0040295	0.149888	0.0578376
chrX	80732955	80733022	7849656	0	-	0.447761	(0.44,0.476]	chrX	800553	1	SS5_PROX	SS5_PROX:INTRON	BRWD3	ENSG00000165288.11	ENST00000373275.5	protein_coding	protein_coding	protein_coding	protein_coding	5	58	2	1.71574	2.181215	2.64669	0.045256	0.0040295	0.149888	0.0578376
chr1	227025174	227025269	648749	0	-	0.452632	(0.44,0.476]	chr1	76918	15	INTRON	INTRON	CDC42BPA	ENSG00000143776.20	ENST00000366766.8:ENST00000366769.7:ENST00000334218.9:ENST00000366767.7:ENST00000448940.5:ENST00000442054.5:ENST00000366764.8:ENST00000429440.5:ENST00000441725.1	protein_coding	protein_coding	protein_coding	protein_coding	7	80	2	2.00793	2.1811949999999998	2.35446	0.00937685	0.00536475	0.0859966	0.0642754
chr7	128481576	128481671	3407120	0	+	0.473684	(0.44,0.476]	chr7	318288	5	INTRON	INTRON	ENSG00000273184:METTL2B	ENSG00000273184.1:ENSG00000165055.16	ENST00000462662.1:ENST00000482555.5:ENST00000262432.13:ENST00000497665.5:ENST00000480046.5:ENST00000473488.1:ENST00000419443.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA:processed_transcript	5	58	2	1.81283	2.1811350000000003	2.54944	0.0343005	0.00591346	0.135641	0.0694038
chr20	49131757	49131856	7351806	0	-	0.484848	(0.476,0.515]	chr20	749646	68	INTRON	INTRON	STAU1	ENSG00000124214.21	ENST00000371856.7:ENST00000371828.7:ENST00000340954.11:ENST00000347458.9:ENST00000360426.8:ENST00000371792.5:ENST00000371802.5:ENST00000437404.2	protein_coding	protein_coding	protein_coding	protein_coding	4	48	2	1.92984	2.18113	2.43242	0.0466474	0.0091895	0.151522	0.0855292
chr21	44049985	44050085	7415411	0	+	0.51	(0.476,0.515]	chr21	755795	117	INTRON	INTRON	TRAPPC10	ENSG00000160218.13	ENST00000291574.9:ENST00000380221.7:ENST00000422875.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	48	2	1.92984	2.18113	2.43242	0.0466474	0.0091895	0.151522	0.0855292
chr7	36400492	36400592	3307106	0	+	0.5	(0.476,0.515]	chr7	307087	7	INTRON	INTRON	ANLN	ENSG00000011426.11	ENST00000396068.6:ENST00000265748.7:ENST00000424865.1	protein_coding	protein_coding	protein_coding	protein_coding	4	48	2	1.92984	2.18113	2.43242	0.0466474	0.0091895	0.151522	0.0855292
chrX	74228498	74228597	7840956	0	-	0.515152	(0.476,0.515]	chrX	799703	94	INTRON	INTRON	FTX	ENSG00000230590.12	ENST00000603672.5:ENST00000430772.6:ENST00000602776.6:ENST00000638681.1:ENST00000652319.1:ENST00000661133.1:ENST00000652071.1:ENST00000602812.6:ENST00000651703.1:ENST00000653018.1:ENST00000658448.1:ENST00000662240.1:ENST00000652527.1:ENST00000651451.1:ENST00000657611.1:ENST00000660481.1:ENST00000659574.1:ENST00000661084.1:ENST00000662494.1:ENST00000670936.1:ENST00000602420.6:ENST00000658203.1:ENST00000638985.1:ENST00000691187.1:ENST00000603037.2:ENST00000641360.1:ENST00000687056.1:ENST00000654870.2:ENST00000652540.1:ENST00000652331.2:ENST00000652013.1:ENST00000669263.1:ENST00000657070.1:ENST00000665069.1:ENST00000651936.1:ENST00000652496.1:ENST00000653874.2:ENST00000661335.1:ENST00000664123.1:ENST00000658439.1:ENST00000666535.1:ENST00000652970.1:ENST00000423992.3:ENST00000665313.2:ENST00000651140.1:ENST00000660100.1:ENST00000693483.1	lncRNA	lncRNA	lncRNA	lncRNA	4	48	2	1.92984	2.18113	2.43242	0.0466474	0.0091895	0.151522	0.0855292
chr11	63843723	63843822	4800916	0	+	0.525253	(0.515,0.57]	chr11	445032	38	INTRON	INTRON	MARK2	ENSG00000072518.22	ENST00000377810.8:ENST00000361128.9:ENST00000508192.5:ENST00000350490.11:ENST00000402010.8:ENST00000502399.7:ENST00000425897.3:ENST00000679216.1:ENST00000513765.7	protein_coding	protein_coding	protein_coding	protein_coding	2	23	2	2.12971	2.18106	2.23241	0.0757903	0.0581268	0.194427	0.188651
chr13	112543057	112543157	5651256	0	-	0.53	(0.515,0.57]	chr13	538478	152	INTRON	INTRON	TUBGCP3	ENSG00000126216.15	ENST00000261965.8:ENST00000649778.1:ENST00000375669.7:ENST00000462580.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	23	2	2.12971	2.18106	2.23241	0.0757903	0.0581268	0.194427	0.188651
chr15	90909700	90909796	6102200	0	+	0.520833	(0.515,0.57]	chr15	581116	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MAN2A2	ENSG00000196547.15	ENST00000560451.5:ENST00000558161.5:ENST00000559717.6:ENST00000560192.5:ENST00000360468.7:ENST00000557865.5:ENST00000560616.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	23	2	2.12971	2.18106	2.23241	0.0757903	0.0581268	0.194427	0.188651
chr16	23401803	23401903	6463561	0	-	0.55	(0.515,0.57]	chr16	623729	33	INTRON	INTRON	COG7	ENSG00000168434.13	ENST00000307149.10:ENST00000567821.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	23	2	2.12971	2.18106	2.23241	0.0757903	0.0581268	0.194427	0.188651
chr18	26306863	26306963	6885302	0	+	0.53	(0.515,0.57]	chr18	682484	112	INTRON	INTRON	TAF4B	ENSG00000141384.13	ENST00000269142.10:ENST00000578121.5:ENST00000418698.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	23	2	2.12971	2.18106	2.23241	0.0757903	0.0581268	0.194427	0.188651
chr18	50389529	50389629	6900553	0	+	0.52	(0.515,0.57]	chr18	683688	38	INTRON	INTRON	SKA1	ENSG00000154839.10	ENST00000398452.6:ENST00000417656.6:ENST00000285116.8:ENST00000488454.5:ENST00000494518.1	protein_coding	protein_coding	protein_coding	protein_coding	2	23	2	2.12971	2.18106	2.23241	0.0757903	0.0581268	0.194427	0.188651
chr19	10800817	10800914	7014619	0	+	0.525773	(0.515,0.57]	chr19	697005	19	INTRON	INTRON	DNM2	ENSG00000079805.19	ENST00000683738.1:ENST00000682285.1:ENST00000355667.11:ENST00000389253.9:ENST00000585892.5:ENST00000359692.10:ENST00000408974.8:ENST00000587830.2:ENST00000587329.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	23	2	2.12971	2.18106	2.23241	0.0757903	0.0581268	0.194427	0.188651
chr19	49106527	49106626	7088596	0	+	0.555556	(0.515,0.57]	chr19	709569	14	INTRON	INTRON	SNRNP70	ENSG00000104852.15	ENST00000601065.5:ENST00000598441.6:ENST00000401730.5:ENST00000221448.9:ENST00000595231.5:ENST00000544278.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	23	2	2.12971	2.18106	2.23241	0.0757903	0.0581268	0.194427	0.188651
chr4	902642	902741	2093989	0	-	0.525253	(0.515,0.57]	chr4	206956	41	INTRON	INTRON	GAK	ENSG00000178950.18	ENST00000314167.9:ENST00000511163.5:ENST00000505819.5:ENST00000507580.5:ENST00000502656.5:ENST00000507991.1:ENST00000512325.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	23	2	2.12971	2.18106	2.23241	0.0757903	0.0581268	0.194427	0.188651
chr5	75715128	75715226	2644363	0	-	0.561224	(0.515,0.57]	chr5	251418	18	INTRON	INTRON	POC5	ENSG00000152359.15	ENST00000428202.7:ENST00000514838.6:ENST00000503835.5:ENST00000515285.5:ENST00000502826.5:ENST00000506164.5:ENST00000512125.5:ENST00000508467.5:ENST00000507421.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	23	2	2.12971	2.18106	2.23241	0.0757903	0.0581268	0.194427	0.188651
chr6	44137506	44137600	2872435	0	+	0.531915	(0.515,0.57]	chr6	272407	7	INTRON	INTRON	TMEM63B	ENSG00000137216.19	ENST00000259746.13:ENST00000323267.11:ENST00000532634.5:ENST00000534326.5:ENST00000525294.5:ENST00000371893.6:ENST00000497371.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	23	2	2.12971	2.18106	2.23241	0.0757903	0.0581268	0.194427	0.188651
chr11	57767926	57768026	4793192	0	+	0.57	(0.515,0.57]	chr11	443717	34	INTRON	INTRON	ENSG00000288534:CTNND1	ENSG00000288534.1:ENSG00000198561.16	ENST00000673781.1:ENST00000673810.1:ENST00000674116.1:ENST00000674060.1:ENST00000524630.5:ENST00000529919.5:ENST00000533189.1:ENST00000682741.1:ENST00000358694.10:ENST00000361332.8:ENST00000361391.10:ENST00000361796.9:ENST00000415361.6:ENST00000426142.6:ENST00000428599.6:ENST00000525902.5:ENST00000526357.5:ENST00000526772.5:ENST00000527467.5:ENST00000528232.5:ENST00000528621.5:ENST00000529526.5:ENST00000529873.5:ENST00000529986.5:ENST00000530094.5:ENST00000530748.5:ENST00000531014.5:ENST00000532245.5:ENST00000532463.5:ENST00000532649.5:ENST00000532787.5:ENST00000532844.5:ENST00000533667.5:ENST00000534579.5:ENST00000399050.10:ENST00000526938.5:ENST00000531007.2:ENST00000674015.1:ENST00000673826.1:ENST00000673683.1:ENST00000674106.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	60	2	1.8661	2.18105	2.496	0.0274846	0.00225531	0.123904	0.0436331
chr1	165831626	165831726	243789	0	+	0.45	(0.44,0.476]	chr1	29139	33	INTRON	INTRON	UCK2	ENSG00000143179.16	ENST00000367879.9:ENST00000642653.1	protein_coding	protein_coding	protein_coding	protein_coding	3	37	2	1.96602	2.1810300000000002	2.39604	0.0426807	0.0404291	0.161534	0.148082
chr16	29571425	29571525	6471314	0	-	0.45	(0.44,0.476]	chr16	625297	17	INTRON	INTRON	ENSG00000288632:SMG1P2	ENSG00000288632.1:ENSG00000205534.6	ENST00000675579.1:ENST00000566127.1	lncRNA	lncRNA	lncRNA:transcribed_unprocessed_pseudogene	lncRNA:transcribed_unprocessed_pseudogene	3	37	2	1.96602	2.1810300000000002	2.39604	0.0426807	0.0404291	0.161534	0.148082
chr17	81626149	81626248	6849500	0	-	0.494949	(0.476,0.515]	chr17	678237	35	INTRON	INTRON	NPLOC4	ENSG00000182446.14	ENST00000331134.11:ENST00000374747.9:ENST00000574897.5:ENST00000625705.1:ENST00000570300.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	65	2	1.31026	2.1808899999999998	3.05152	0.046104	0.0064848	0.165623	0.0699952
chr2	188263931	188264031	1295160	0	-	0.31	(0.28,0.32]	chr2	135671	350	INTRON	INTRON	LINC01090	ENSG00000231689.3	ENST00000434418.2:ENST00000632331.1:ENST00000415357.1	lncRNA	lncRNA	lncRNA	lncRNA	8	114	2	1.92947	2.180885	2.4323	0.00937907	0.00540168	0.0860074	0.0644179
chr6	158766326	158766424	3252792	0	-	0.602041	(0.57,1]	chr6	302311	7	UTR3	UTR3:EXON_MRNA	EZR	ENSG00000092820.19	ENST00000337147.11:ENST00000367075.4	protein_coding	protein_coding	protein_coding	protein_coding	4	24	2	1.83769	2.18087	2.52405	0.0297587	0.0263139	0.133676	0.12908
chr6	37855297	37855397	2857388	0	+	0.44	(0.408,0.44]	chr6	270225	349	INTRON	INTRON	ZFAND3	ENSG00000156639.12	ENST00000287218.9:ENST00000373391.6:ENST00000474522.5	protein_coding	protein_coding	protein_coding	protein_coding	10	93	2	1.38093	2.18086	2.98079	0.0305221	0.00124935	0.143385	0.0323434
chr20	32565977	32566077	7326727	0	-	0.46	(0.44,0.476]	chr20	746144	167	INTRON	INTRON	NOL4L	ENSG00000197183.15	ENST00000621426.7:ENST00000201961.6:ENST00000485364.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	110	2	1.28614	2.1808199999999998	3.0755	0.0497218	1.9693e-4	0.17488	0.0128602
chr16	21426468	21426567	6460578	0	-	0.30303	(0.28,0.32]	chr16	623218	6	INTRON	INTRON	NPIPB3	ENSG00000169246.16	ENST00000521589.5:ENST00000534903.1:ENST00000545358.5:ENST00000543368.1:ENST00000544154.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	15	215	2	2.1609	2.180735	2.20057	0.00277468	0.00104132	0.0469265	0.0296504
chr17	49295937	49296036	6791881	0	-	0.181818	[0,0.28]	chr17	670140	69	UTR3	UTR3:EXON_MRNA:INTRON	ZNF652	ENSG00000198740.9	ENST00000430262.3:ENST00000508237.5:ENST00000362063.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	64	2	1.55741	2.180685	2.80396	0.0792968	0.0161429	0.199711	0.109464
chr5	10354496	10354567	2317653	0	+	0.366197	(0.35,0.378]	chr5	224608	1	INTRON	INTRON	MARCHF6	ENSG00000145495.16	ENST00000274140.10:ENST00000449913.6:ENST00000502795.5:ENST00000511802.5:ENST00000503788.5:ENST00000640713.1:ENST00000510872.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	47	2	1.82281	2.180685	2.53856	0.0326077	0.0316938	0.144635	0.133687
chr1	26707329	26707429	51284	0	+	0.52	(0.515,0.57]	chr1	6542	94	INTRON	INTRON	ARID1A	ENSG00000117713.21	ENST00000430799.7:ENST00000324856.13:ENST00000637465.1:ENST00000457599.6	protein_coding	protein_coding	protein_coding	protein_coding	6	57	2	1.73313	2.18065	2.62817	0.0258496	0.004048	0.121322	0.0578376
chr2	69938978	69939077	805752	0	+	0.454545	(0.44,0.476]	chr2	89939	8	UTR3	UTR3:EXON_MRNA:INTRON	MXD1	ENSG00000059728.11	ENST00000540449.5:ENST00000264444.7:ENST00000465446.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	123	2	1.9037	2.1805849999999998	2.45747	0.00735504	6.55527e-4	0.0739587	0.0232396
chr16	9117305	9117403	6285630	0	+	0.377551	(0.35,0.378]	chr16	601935	5	UTR3	UTR3:EXON_MRNA	C16orf72	ENSG00000182831.12	ENST00000327827.12	protein_coding	protein_coding	protein_coding	protein_coding	4	53	2	2.17079	2.180565	2.19034	0.023941	0.0225978	0.124921	0.119443
chr1	147850	147948	352785	0	-	0.469388	(0.44,0.476]	chr1	40806	16	EXON_LNCRNA	EXON_LNCRNA:INTRON	ENSG00000241860	ENSG00000241860.7	ENST00000484859.1:ENST00000466557.6	lncRNA	lncRNA	lncRNA	lncRNA	6	67	2	1.76195	2.180415	2.59888	0.0252608	0.00487719	0.12011	0.0640618
chr1	51460766	51460854	453764	0	-	0.5	(0.476,0.515]	chr1	54404	3	SS5_PROX	SS5_PROX:INTRON	EPS15	ENSG00000085832.17	ENST00000371733.8:ENST00000371730.6:ENST00000371727.5:ENST00000464478.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	19	207	2	1.9574	2.180405	2.40341	0.00131856	3.40915e-4	0.0333932	0.0171194
chr11	73720058	73720154	4985379	0	-	0.354167	(0.35,0.378]	chr11	470880	8	INTRON	INTRON	RAB6A	ENSG00000175582.20	ENST00000310653.10:ENST00000336083.8:ENST00000541973.5:ENST00000536566.5:ENST00000541588.5:ENST00000545625.5:ENST00000540771.5:ENST00000537446.5:ENST00000400470.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	49	2	2.11531	2.18033	2.24535	0.0647516	0.0119629	0.179192	0.0962115
chr6	35315821	35315919	2851907	0	+	0.418367	(0.408,0.44]	chr6	269451	27	INTRON	INTRON	DEF6	ENSG00000023892.11	ENST00000316637.7	protein_coding	protein_coding	protein_coding	protein_coding	7	83	2	2.17784	2.1802650000000003	2.18269	0.00916282	0.0055386	0.0855292	0.0648867
chr3	152314534	152314634	1535444	0	+	0.5	(0.476,0.515]	chr3	159996	122	INTRON	INTRON	MBNL1	ENSG00000152601.18	ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000495875.6:ENST00000324210.10:ENST00000493459.5:ENST00000459747.1:ENST00000460591.5:ENST00000545754.5:ENST00000357472.7:ENST00000324196.9:ENST00000498502.5:ENST00000463374.5:ENST00000485910.5:ENST00000465907.6:ENST00000492948.5:ENST00000485509.5:ENST00000464596.5	protein_coding	protein_coding	protein_coding	protein_coding	14	154	2	2.10459	2.18026	2.25593	0.00302726	5.29358e-4	0.0493883	0.0207276
chr10	35569569	35569669	4426850	0	+	0.41	(0.408,0.44]	chr10	407969	5	UTR3	UTR3:EXON_MRNA	CCNY	ENSG00000108100.18	ENST00000374706.5:ENST00000374704.8:ENST00000265375.13:ENST00000339497.7	protein_coding	protein_coding	protein_coding	protein_coding	17	183	2	1.74439	2.18016	2.61593	0.00529494	1.48994e-4	0.063668	0.0106021
chr13	95171526	95171626	5638565	0	-	0.34	(0.32,0.35]	chr13	537099	5	INTRON	INTRON	ABCC4	ENSG00000125257.16	ENST00000645237.2:ENST00000643051.1:ENST00000643842.1:ENST00000646439.1:ENST00000643816.1:ENST00000536256.3:ENST00000643556.1:ENST00000629385.1:ENST00000642524.1:ENST00000645532.1:ENST00000644471.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	76	2	1.32435	2.18016	3.03597	0.0459022	0.00832487	0.164984	0.0774402
chr14	101831100	101831200	5819202	0	+	0.44	(0.408,0.44]	chr14	551860	58	INTRON	INTRON	PPP2R5C	ENSG00000078304.20	ENST00000694906.1:ENST00000422945.6:ENST00000554442.5:ENST00000328724.9:ENST00000553890.1:ENST00000350249.7:ENST00000557621.5:ENST00000556946.1:ENST00000556307.5:ENST00000553730.5:ENST00000557714.1:ENST00000334743.9:ENST00000445439.7:ENST00000557095.5:ENST00000556493.1:ENST00000553842.1:ENST00000556373.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	55	2	1.35436	2.180155	3.00595	0.0603719	0.00781452	0.19151	0.0759016
chr1	16317830	16317930	382273	0	-	0.5	(0.476,0.515]	chr1	44888	20	INTRON	INTRON	FBXO42	ENSG00000037637.11	ENST00000375592.8	protein_coding	protein_coding	protein_coding	protein_coding	14	142	2	1.87531	2.180135	2.48496	0.00246923	0.00143091	0.0459854	0.0340925
chr9	137627937	137628037	4223561	0	+	0.52	(0.515,0.57]	chr9	388152	75	INTRON	INTRON	EHMT1	ENSG00000181090.21	ENST00000462484.5:ENST00000371394.6:ENST00000630754.2:ENST00000460843.6:ENST00000626216.2:ENST00000637593.1:ENST00000629335.2:ENST00000637335.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	47	2	1.32981	2.18009	3.03037	0.0640038	0.00608732	0.199279	0.0676501
chr10	87904676	87904776	4483344	0	+	0.4	(0.378,0.408]	chr10	412570	102	INTRON	INTRON	PTEN	ENSG00000171862.12	ENST00000688308.1:ENST00000693560.1:ENST00000371953.8:ENST00000688158.1:ENST00000686459.1:ENST00000688922.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	37	2	1.97143	2.18008	2.38873	0.0458857	0.0398704	0.161534	0.149888
chr12	121351868	121351950	5437185	0	-	0.378049	(0.378,0.408]	chr12	519934	3	SS5_PROX	SS5_PROX:INTRON	ANAPC5	ENSG00000089053.13	ENST00000261819.8:ENST00000541887.5:ENST00000534976.5:ENST00000544442.5:ENST00000536416.5:ENST00000539871.1:ENST00000536837.1:ENST00000545801.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	37	2	1.97143	2.18008	2.38873	0.0458857	0.0398704	0.161534	0.149888
chr15	41045860	41045955	6152508	0	-	0.378947	(0.378,0.408]	chr15	585303	4	INTRON	INTRON	INO80	ENSG00000128908.18	ENST00000648947.1:ENST00000401393.7:ENST00000558357.6:ENST00000559995.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	37	2	1.97143	2.18008	2.38873	0.0458857	0.0398704	0.161534	0.149888
chr19	53083828	53083926	7210367	0	-	0.387755	(0.378,0.408]	chr19	731876	61	INTRON	INTRON	ZNF160	ENSG00000170949.18	ENST00000599056.5:ENST00000418871.5:ENST00000429604.5:ENST00000683776.1:ENST00000599247.5:ENST00000601982.5:ENST00000355147.9:ENST00000599729.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	37	2	1.97143	2.18008	2.38873	0.0458857	0.0398704	0.161534	0.149888
chr9	69232577	69232675	4138724	0	+	0.387755	(0.378,0.408]	chr9	377157	20	INTRON	INTRON	TJP2	ENSG00000119139.21	ENST00000648087.1:ENST00000647986.1:ENST00000636438.1:ENST00000377245.9:ENST00000348208.9:ENST00000649114.1:ENST00000649943.1:ENST00000636247.1:ENST00000650333.1:ENST00000650522.1:ENST00000649783.1:ENST00000535702.6:ENST00000649134.1:ENST00000539225.2:ENST00000650084.1:ENST00000650460.1:ENST00000648042.1:ENST00000648460.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	37	2	1.97143	2.18008	2.38873	0.0458857	0.0398704	0.161534	0.149888
chr2	233850159	233850259	1343817	0	-	0.48	(0.476,0.515]	chr2	140852	3	SS3_PROX	SS3_PROX:INTRON	HJURP	ENSG00000123485.12	ENST00000432087.5:ENST00000441687.5:ENST00000411486.7:ENST00000414924.5:ENST00000454020.1:ENST00000453122.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	110	2	1.99499	2.1800550000000003	2.36512	0.00408599	0.00246559	0.0581771	0.0446195
chr17	81594925	81595023	6849171	0	-	0.357143	(0.35,0.378]	chr17	678168	55	INTRON	INTRON	NPLOC4	ENSG00000182446.14	ENST00000331134.11:ENST00000374747.9:ENST00000574897.5:ENST00000572351.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	12	146	2	1.6421	2.18002	2.71794	0.0173423	1.73973e-4	0.104152	0.0114458
chr10	24659088	24659188	4581296	0	-	0.4	(0.378,0.408]	chr10	422181	236	INTRON	INTRON	ARHGAP21	ENSG00000107863.20	ENST00000612832.4:ENST00000396432.7:ENST00000680286.1:ENST00000376410.7:ENST00000446003.5:ENST00000476499.1:ENST00000416305.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	37	2	1.89621	2.17997	2.46373	0.0488044	0.0382831	0.173377	0.141795
chr12	104495006	104495106	5211064	0	+	0.38	(0.378,0.408]	chr12	493315	371	INTRON	INTRON	CHST11	ENSG00000171310.11	ENST00000303694.6:ENST00000547956.1:ENST00000549260.5:ENST00000546689.1	protein_coding	protein_coding	protein_coding	protein_coding	3	37	2	1.89621	2.17997	2.46373	0.0488044	0.0382831	0.173377	0.141795
chr2	169553139	169553238	1261486	0	-	0.40404	(0.378,0.408]	chr2	133643	61	INTRON	INTRON	FASTKD1	ENSG00000138399.18	ENST00000453153.7:ENST00000453929.6	protein_coding	protein_coding	protein_coding	protein_coding	3	37	2	1.89621	2.17997	2.46373	0.0488044	0.0382831	0.173377	0.141795
chr3	47452884	47452984	1682627	0	-	0.4	(0.378,0.408]	chr3	171875	94	INTRON	INTRON	SCAP	ENSG00000114650.21	ENST00000265565.10:ENST00000441517.6:ENST00000320017.10:ENST00000648151.1:ENST00000416208.5:ENST00000416847.5:ENST00000448217.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	37	2	1.89621	2.17997	2.46373	0.0488044	0.0382831	0.173377	0.141795
chr6	15389939	15390039	2824387	0	+	0.39	(0.378,0.408]	chr6	265198	153	INTRON	INTRON	JARID2	ENSG00000008083.14	ENST00000341776.7:ENST00000397311.4	protein_coding	protein_coding	protein_coding	protein_coding	3	37	2	1.89621	2.17997	2.46373	0.0488044	0.0382831	0.173377	0.141795
chr1	225860433	225860530	645988	0	-	0.278351	[0,0.28]	chr1	76470	9	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	TMEM63A	ENSG00000196187.12	ENST00000366835.8:ENST00000474478.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	87	2	2.02891	2.17994	2.33097	0.0236076	0.0158969	0.118716	0.109464
chr18	9497511	9497611	6871354	0	+	0.55	(0.515,0.57]	chr18	680716	177	INTRON	INTRON	RALBP1	ENSG00000017797.13	ENST00000019317.8:ENST00000585015.6:ENST00000383432.8:ENST00000609094.2:ENST00000458039.3:ENST00000577221.1	protein_coding	protein_coding	protein_coding	protein_coding	6	48	2	1.59629	2.179915	2.76354	0.0274344	0.0147344	0.136554	0.0983813
chr7	101884026	101884126	3367029	0	+	0.53	(0.515,0.57]	chr7	315215	647	INTRON	INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000497815.5:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000607092.1:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000558469.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	43	2	1.37301	2.17989	2.98677	0.0752392	0.00632549	0.193891	0.0722266
chr3	152336029	152336129	1535661	0	+	0.35	(0.32,0.35]	chr3	160003	4	INTRON	INTRON	MBNL1	ENSG00000152601.18	ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000495875.6:ENST00000324210.10:ENST00000493459.5:ENST00000459747.1:ENST00000460591.5:ENST00000545754.5:ENST00000357472.7:ENST00000324196.9:ENST00000498502.5:ENST00000463374.5:ENST00000485910.5:ENST00000465907.6:ENST00000492948.5:ENST00000485509.5:ENST00000464596.5	protein_coding	protein_coding	protein_coding	protein_coding	10	133	2	2.08466	2.17988	2.2751	0.00617675	0.0019529	0.0677395	0.0411469
chr16	24764151	24764251	6329560	0	+	0.36	(0.35,0.378]	chr16	605945	54	INTRON	INTRON	TNRC6A	ENSG00000090905.19	ENST00000395799.8:ENST00000315183.11:ENST00000562829.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	101	2	1.78162	2.17984	2.57806	0.0251606	7.61742e-4	0.12011	0.0253498
chr20	31717345	31717445	7325317	0	-	0.48	(0.476,0.515]	chr20	745996	324	INTRON	INTRON	BCL2L1	ENSG00000171552.14	ENST00000376055.9:ENST00000376062.6:ENST00000307677.5:ENST00000420488.6:ENST00000439267.2:ENST00000678563.1:ENST00000456404.6:ENST00000676942.1:ENST00000676582.1:ENST00000434194.2:ENST00000677194.1:ENST00000678671.1:ENST00000677494.1:ENST00000422920.2:ENST00000450273.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	72	2	1.91525	2.17983	2.44441	0.0232571	0.0036718	0.127416	0.0535094
chr15	67068612	67068712	6051875	0	+	0.35	(0.32,0.35]	chr15	576256	3	INTRON	INTRON	SMAD3	ENSG00000166949.17	ENST00000559460.5:ENST00000327367.9:ENST00000679624.1	protein_coding	protein_coding	protein_coding	protein_coding	8	104	2	2.02448	2.17981	2.33514	0.00690847	0.00595393	0.0718189	0.0698475
chr6	15018342	15018441	3063115	0	-	0.424242	(0.408,0.44]	chr6	284653	95	INTRON	INTRON	ENSG00000234261	ENSG00000234261.5	ENST00000629853.2:ENST00000653525.1:ENST00000656468.1:ENST00000656344.1:ENST00000437648.1	lncRNA	lncRNA	lncRNA	lncRNA	5	60	2	2.08486	2.1797500000000003	2.27464	0.0158016	0.0145898	0.109464	0.0981689
chr7	22986824	22986923	3501762	0	-	0.353535	(0.35,0.378]	chr7	326792	7	INTRON	INTRON	FAM126A	ENSG00000122591.13	ENST00000465661.2:ENST00000432176.7:ENST00000440481.6:ENST00000679826.1:ENST00000681402.1:ENST00000681237.1:ENST00000679789.1:ENST00000409923.5:ENST00000681766.1:ENST00000681079.1:ENST00000477349.5:ENST00000409763.1:ENST00000467005.6:ENST00000681468.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	68	2	1.6344	2.179685	2.72497	0.0198266	0.0189573	0.118501	0.109608
chr1	89557217	89557317	157725	0	+	0.39	(0.378,0.408]	chr1	17171	69	INTRON	INTRON	LRRC8B	ENSG00000197147.15	ENST00000330947.7:ENST00000439853.6:ENST00000449440.5:ENST00000640258.1:ENST00000639264.1	protein_coding	protein_coding	protein_coding	protein_coding	4	50	2	2.00398	2.1796249999999997	2.35527	0.0393906	0.0121511	0.143072	0.0963966
chr14	102680394	102680494	5823411	0	+	0.4	(0.378,0.408]	chr14	552490	867	INTRON	INTRON	RCOR1	ENSG00000089902.10	ENST00000262241.7	protein_coding	protein_coding	protein_coding	protein_coding	4	50	2	2.00398	2.1796249999999997	2.35527	0.0393906	0.0121511	0.143072	0.0963966
chr7	100339484	100339580	3364371	0	+	0.354167	(0.35,0.378]	chr7	314637	2	INTRON	INTRON	STAG3L5P:STAG3L5P-PVRIG2P-PILRB	ENSG00000242294.6:ENSG00000272752.6	ENST00000473757.5:ENST00000470714.5:ENST00000310771.8:ENST00000483329.6:ENST00000422479.5:ENST00000444874.5:ENST00000488972.6:ENST00000493499.1	lncRNA	retained_intron	lncRNA:transcribed_unprocessed_pseudogene	retained_intron:lncRNA:processed_transcript	8	101	2	2.15229	2.17961	2.20693	0.00553341	0.00545124	0.0669407	0.0648867
chrX	53654431	53654531	7821586	0	-	0.39	(0.378,0.408]	chrX	798233	3	SS3_PROX	SS3_PROX:INTRON	HUWE1	ENSG00000086758.16	ENST00000262854.11:ENST00000342160.7:ENST00000218328.12:ENST00000446750.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	51	2	1.45712	2.17937	2.90162	0.0597975	0.0113157	0.189982	0.0886121
chr8	23020912	23021010	3923451	0	-	0.5	(0.476,0.515]	chr8	359060	9	UTR3	UTR3:EXON_MRNA	TNFRSF10B	ENSG00000120889.13	ENST00000276431.9:ENST00000523752.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	80	2	1.69758	2.17935	2.66112	0.0144542	0.0044598	0.105087	0.0592169
chr19	21175152	21175252	7040293	0	+	0.35	(0.32,0.35]	chr19	701951	3	SS3_PROX	SS3_PROX:INTRON	ZNF431	ENSG00000196705.8	ENST00000600692.5:ENST00000599296.5:ENST00000594425.5:ENST00000311048.11:ENST00000598331.1	protein_coding	protein_coding	protein_coding	protein_coding	6	78	2	1.60939	2.179345	2.7493	0.0439266	0.00296357	0.14937	0.0500135
chr1	158637161	158637261	570112	0	-	0.45	(0.44,0.476]	chr1	68789	4	SS3_PROX	SS3_PROX:INTRON	SPTA1	ENSG00000163554.15	ENST00000643759.2	protein_coding	protein_coding	protein_coding	protein_coding	6	55	2	1.4962	2.179255	2.86231	0.0392301	0.012214	0.161534	0.0910127
chr8	31103745	31103844	3728651	0	+	0.575758	(0.57,1]	chr8	346622	24	INTRON	INTRON	WRN	ENSG00000165392.11	ENST00000650667.1:ENST00000298139.7:ENST00000521620.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	27	2	1.55956	2.179225	2.79889	0.0448639	0.0110274	0.149888	0.0927187
chr9	137645044	137645142	4223734	0	+	0.591837	(0.57,1]	chr9	388158	71	INTRON	INTRON	EHMT1	ENSG00000181090.21	ENST00000462484.5:ENST00000371394.6:ENST00000630754.2:ENST00000460843.6:ENST00000626216.2:ENST00000637593.1:ENST00000629335.2:ENST00000637335.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	27	2	1.55956	2.179225	2.79889	0.0448639	0.0110274	0.149888	0.0927187
chr13	113256023	113256122	5548773	0	+	0.494949	(0.476,0.515]	chr13	530211	5	INTRON	INTRON	CUL4A	ENSG00000139842.15	ENST00000375441.7:ENST00000326335.8:ENST00000451881.5:ENST00000617546.4:ENST00000375440.9:ENST00000472083.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	49	2	1.99341	2.179205	2.365	0.037389	0.0128901	0.155878	0.0926667
chr10	73247708	73247808	4648958	0	-	0.44	(0.408,0.44]	chr10	427706	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ENSG00000288559	ENSG00000288559.1	ENST00000512551.1	lncRNA	lncRNA	lncRNA	lncRNA	9	100	2	1.85567	2.179185	2.5027	0.0090746	0.00238178	0.080809	0.0449397
chr12	121333102	121333201	5436986	0	-	0.454545	(0.44,0.476]	chr12	519894	18	EXON_MRNA	EXON_MRNA:INTRON	ANAPC5	ENSG00000089053.13	ENST00000261819.8:ENST00000535641.5:ENST00000541887.5:ENST00000534976.5:ENST00000441917.6:ENST00000539079.5:ENST00000544314.5:ENST00000545218.5:ENST00000535472.5:ENST00000538334.1:ENST00000538223.1:ENST00000539612.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	58	2	1.92837	2.179165	2.42996	0.0222222	0.0104804	0.124303	0.0855777
chr17	76266664	76266762	6677149	0	+	0.520408	(0.515,0.57]	chr17	652074	3	INTRON	INTRON	UBALD2	ENSG00000185262.9	ENST00000327490.8:ENST00000587913.1:ENST00000589240.1	protein_coding	protein_coding	protein_coding	protein_coding	15	139	2	1.93807	2.17916	2.42025	0.00192455	4.96659e-4	0.0406394	0.0206993
chr4	67469844	67469943	2152738	0	-	0.444444	(0.44,0.476]	chr4	211903	12	UTR3	UTR3:EXON_MRNA	CENPC	ENSG00000145241.11	ENST00000273853.11	protein_coding	protein_coding	protein_coding	protein_coding	4	48	2	2.02558	2.17915	2.33272	0.0363567	0.0129984	0.138959	0.0991656
chrX	73972071	73972171	7682379	0	+	0.29	(0.28,0.32]	chrX	786638	37	INTRON	INTRON	JPX	ENSG00000225470.8	ENST00000664637.1:ENST00000639185.1:ENST00000655090.1:ENST00000640437.1:ENST00000660546.1:ENST00000667886.1:ENST00000660840.1:ENST00000657179.1:ENST00000670506.1:ENST00000657910.1:ENST00000662120.1:ENST00000671207.1:ENST00000659254.1:ENST00000656624.1:ENST00000667573.1:ENST00000660856.1:ENST00000660836.1:ENST00000668590.1:ENST00000658649.1:ENST00000414209.6:ENST00000654137.1:ENST00000670994.1:ENST00000602772.5:ENST00000655879.1:ENST00000657372.1:ENST00000657096.1:ENST00000602985.6:ENST00000670685.1:ENST00000670503.1:ENST00000663027.1:ENST00000654995.1:ENST00000602895.6:ENST00000654374.1:ENST00000660087.1:ENST00000665032.1:ENST00000671336.1:ENST00000671476.1:ENST00000667057.1:ENST00000670192.1:ENST00000670464.1:ENST00000665345.1:ENST00000661546.1:ENST00000662543.1:ENST00000602938.6:ENST00000664295.1:ENST00000654005.1:ENST00000669149.1:ENST00000659852.1:ENST00000656509.1:ENST00000602294.6:ENST00000667294.1:ENST00000663470.1:ENST00000602920.6:ENST00000671021.1:ENST00000659849.1:ENST00000667937.1:ENST00000661130.1:ENST00000654196.1:ENST00000655994.1:ENST00000659373.1:ENST00000662239.1:ENST00000670805.1:ENST00000656263.1:ENST00000653069.1:ENST00000657638.1:ENST00000653808.1:ENST00000653929.1:ENST00000653885.1:ENST00000659023.1:ENST00000602546.5:ENST00000659622.1:ENST00000671518.1:ENST00000670408.1	lncRNA	lncRNA	lncRNA	lncRNA	3	45	2	1.96475	2.17911	2.39347	0.0504457	0.0428385	0.162255	0.156383
chr17	77495813	77495913	6681625	0	+	0.57	(0.515,0.57]	chr17	652614	2	SS3_PROX	SS3_PROX:INTRON	SEPTIN9	ENSG00000184640.20	ENST00000591198.5:ENST00000427177.6:ENST00000431235.6:ENST00000449803.6:ENST00000329047.13:ENST00000588690.6:ENST00000423034.6:ENST00000427674.6:ENST00000585930.5:ENST00000541152.6:ENST00000591088.5:ENST00000592481.6:ENST00000592951.5:ENST00000427180.5:ENST00000586456.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	37	2	1.7492	2.1790950000000002	2.60899	0.0382504	0.0232669	0.15832	0.118148
chr19	34398244	34398340	7052835	0	+	0.520833	(0.515,0.57]	chr19	703425	11	EXON_MRNA	EXON_MRNA:INTRON	GPI	ENSG00000105220.17	ENST00000415930.8:ENST00000588991.7:ENST00000356487.11:ENST00000647446.1:ENST00000586425.2:ENST00000643067.1:ENST00000586392.1:ENST00000586077.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	37	2	1.7492	2.1790950000000002	2.60899	0.0382504	0.0232669	0.15832	0.118148
chr3	49080022	49080121	1692098	0	-	0.282828	(0.28,0.32]	chr3	173160	26	INTRON	INTRON	QRICH1	ENSG00000198218.11	ENST00000395443.7:ENST00000357496.6:ENST00000424300.5:ENST00000411682.1:ENST00000450685.5:ENST00000437939.5:ENST00000430979.1	protein_coding	protein_coding	protein_coding	protein_coding	3	45	2	1.90263	2.17904	2.45545	0.0503272	0.0438092	0.17488	0.14901
chr7	99457009	99457100	3362044	0	+	0.582418	(0.57,1]	chr7	314020	5	UTR3	UTR3:EXON_MRNA	CPSF4	ENSG00000160917.15	ENST00000436336.6:ENST00000292476.10:ENST00000451876.5	protein_coding	protein_coding	protein_coding	protein_coding	8	46	2	1.80424	2.1790149999999997	2.55379	0.0129439	0.0015786	0.0991015	0.0362091
chr10	21596939	21597039	4405046	0	+	0.3	(0.28,0.32]	chr10	406466	11	INTRON	INTRON	MLLT10	ENSG00000078403.17	ENST00000651097.1:ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000650772.1:ENST00000651298.1:ENST00000495130.5:ENST00000377059.7:ENST00000652258.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	62	2	1.76293	2.178985	2.59504	0.0766478	0.00582473	0.196164	0.0687439
chr9	137640200	137640298	4223685	0	+	0.336735	(0.32,0.35]	chr9	388158	22	INTRON	INTRON	EHMT1	ENSG00000181090.21	ENST00000462484.5:ENST00000371394.6:ENST00000630754.2:ENST00000460843.6:ENST00000626216.2:ENST00000637593.1:ENST00000629335.2:ENST00000637335.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	68	2	1.81388	2.17898	2.54408	0.0371014	0.00659077	0.139201	0.0737338
chr17	27123308	27123408	6580058	0	+	0.38	(0.378,0.408]	chr17	639586	265	INTRON	INTRON	ENSG00000285822	ENSG00000285822.1	ENST00000649401.1	lncRNA	lncRNA	lncRNA	lncRNA	13	153	2	2.00577	2.1789300000000003	2.35209	0.00279033	0.00106496	0.0488769	0.0299332
chr7	156882971	156883071	3687916	0	-	0.43	(0.408,0.44]	chr7	342096	457	INTRON	INTRON	LMBR1	ENSG00000105983.23	ENST00000353442.10:ENST00000415428.5:ENST00000454132.5:ENST00000434503.5:ENST00000430278.5:ENST00000434278.5:ENST00000444719.5:ENST00000461469.5:ENST00000414218.1:ENST00000434453.1:ENST00000498034.5:ENST00000433968.5:ENST00000485985.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	81	2	2.00842	2.17891	2.3494	0.0108512	0.00462504	0.0873034	0.062717
chr12	122521027	122521116	5442196	0	-	0.460674	(0.44,0.476]	chr12	520584	6	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RSRC2	ENSG00000111011.18	ENST00000331738.12:ENST00000532695.5:ENST00000433877.6:ENST00000527173.6:ENST00000525335.6:ENST00000344591.8:ENST00000527399.3:ENST00000527796.6:ENST00000526560.6:ENST00000527461.5:ENST00000531639.5:ENST00000532186.5:ENST00000525387.5:ENST00000528279.1:ENST00000525570.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	58	2	1.66462	2.178795	2.69297	0.0520247	0.00333494	0.159508	0.0528877
chr1	35544492	35544591	421751	0	-	0.434343	(0.408,0.44]	chr1	50820	107	INTRON	INTRON	KIAA0319L	ENSG00000142687.18	ENST00000325722.8:ENST00000426982.6:ENST00000440579.5:ENST00000482929.6:ENST00000478463.6:ENST00000470388.5:ENST00000492888.1:ENST00000469892.5:ENST00000494948.1:ENST00000476329.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	45	2	1.69172	2.1787549999999998	2.66579	0.0486032	0.019342	0.153946	0.119831
chr19	17293653	17293753	7029697	0	+	0.41	(0.408,0.44]	chr19	699944	4	INTRON	INTRON	MRPL34	ENSG00000130312.7	ENST00000595444.1:ENST00000600434.5	protein_coding	protein_coding	protein_coding	protein_coding	4	45	2	1.69172	2.1787549999999998	2.66579	0.0486032	0.019342	0.153946	0.119831
chr19	32600374	32600462	7168840	0	-	0.511364	(0.476,0.515]	chr19	724335	2	SS3_PROX	SS3_PROX:INTRON	ANKRD27	ENSG00000105186.16	ENST00000306065.9	protein_coding	protein_coding	protein_coding	protein_coding	5	59	2	2.09697	2.178655	2.26034	0.0166235	0.0136924	0.110511	0.0949306
chr5	54101526	54101625	2618822	0	-	0.282828	(0.28,0.32]	chr5	248841	256	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	62	2	2.13651	2.1786	2.22069	0.0265696	0.0243177	0.134088	0.12011
chr5	178207625	178207725	2559437	0	+	0.35	(0.32,0.35]	chr5	244645	4	SS5_PROX	SS5_PROX:INTRON	HNRNPAB	ENSG00000197451.12	ENST00000358344.8:ENST00000506339.5:ENST00000355836.9:ENST00000514633.5:ENST00000515193.5:ENST00000506259.5:ENST00000504898.5	protein_coding	protein_coding	protein_coding	protein_coding	17	239	2	2.00592	2.178595	2.35127	0.00316405	4.63434e-4	0.0516639	0.0198848
chr19	15387349	15387449	7147796	0	-	0.4	(0.378,0.408]	chr19	722074	49	INTRON	INTRON	AKAP8L	ENSG00000011243.19	ENST00000594594.6:ENST00000679638.1:ENST00000595465.6:ENST00000599137.6:ENST00000397410.10:ENST00000609519.5:ENST00000593845.5:ENST00000680649.1:ENST00000596213.6:ENST00000681170.1:ENST00000680703.1:ENST00000680017.1:ENST00000595879.6:ENST00000680303.1:ENST00000679634.1:ENST00000681744.1:ENST00000680803.1:ENST00000681459.1:ENST00000680323.1:ENST00000680774.1:ENST00000680302.1:ENST00000680103.1:ENST00000680642.1:ENST00000681405.1:ENST00000680957.1:ENST00000680865.1:ENST00000680363.1:ENST00000595087.6:ENST00000600065.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	50	2	1.94681	2.17859	2.41037	0.0457723	0.0100185	0.149888	0.0880217
chr6	24711075	24711173	3070643	0	-	0.438776	(0.408,0.44]	chr6	285352	18	INTRON	INTRON	C6orf62	ENSG00000112308.13	ENST00000378119.9:ENST00000378102.3	protein_coding	protein_coding	protein_coding	protein_coding	17	190	2	2.12464	2.1785699999999997	2.2325	9.13081e-4	8.09468e-4	0.0278396	0.0259413
chr1	246920271	246920370	681846	0	-	0.232323	[0,0.28]	chr1	80043	15	INTRON	INTRON	AHCTF1	ENSG00000153207.16	ENST00000648844.2:ENST00000326225.3:ENST00000366508.5	protein_coding	protein_coding	protein_coding	protein_coding	4	62	2	1.71402	2.1785550000000002	2.64309	0.047753	0.0308646	0.170327	0.13151
chr1	77945832	77945931	494172	0	-	0.262626	[0,0.28]	chr1	58476	19	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	FUBP1	ENSG00000162613.17	ENST00000370768.7:ENST00000492724.1:ENST00000492405.5:ENST00000488814.5:ENST00000489495.5:ENST00000474632.5:ENST00000480673.5:ENST00000483894.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	132	2	2.10718	2.1785449999999997	2.24991	0.0187468	0.0029439	0.108861	0.0497585
chr6	152829377	152829476	3249076	0	-	0.515152	(0.476,0.515]	chr6	301915	102	INTRON	INTRON	LINC02840	ENSG00000224893.7	ENST00000666093.1:ENST00000656248.1:ENST00000670640.1:ENST00000657202.1:ENST00000659837.1:ENST00000654424.1:ENST00000456715.5:ENST00000670414.1:ENST00000663653.1:ENST00000671138.1	lncRNA	lncRNA	lncRNA	lncRNA	6	66	2	1.54629	2.178525	2.81076	0.0484352	0.00203568	0.153635	0.0417667
chr11	68483484	68483584	4817560	0	+	0.46	(0.44,0.476]	chr11	448907	223	INTRON	INTRON	PPP6R3	ENSG00000110075.15	ENST00000530427.5:ENST00000528635.5:ENST00000529907.5:ENST00000533127.5:ENST00000534534.5:ENST00000529344.5:ENST00000524845.5:ENST00000393800.7:ENST00000265637.8:ENST00000524904.5:ENST00000393801.7:ENST00000265636.9:ENST00000529710.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	66	2	1.92704	2.1785	2.42996	0.0128054	0.0104804	0.0990564	0.0855777
chr3	193619931	193620030	1592131	0	+	0.262626	[0,0.28]	chr3	164758	6	INTRON	INTRON	OPA1	ENSG00000198836.11	ENST00000361828.7:ENST00000361715.6:ENST00000361150.6:ENST00000361908.8:ENST00000361510.8:ENST00000642445.1:ENST00000646277.1:ENST00000644595.1:ENST00000643737.1:ENST00000644841.1:ENST00000392436.7:ENST00000646085.1:ENST00000643329.1:ENST00000646793.1:ENST00000392437.6:ENST00000645553.1:ENST00000642593.1:ENST00000644959.1:ENST00000642289.1:ENST00000646699.1:ENST00000644629.1:ENST00000434811.2:ENST00000497189.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	62	2	1.62313	2.178485	2.73384	0.0605286	0.0246308	0.191883	0.12011
chr10	7802854	7802954	4387672	0	+	0.34	(0.32,0.35]	chr10	405067	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ATP5F1C	ENSG00000165629.20	ENST00000493053.5:ENST00000335698.4:ENST00000356708.12:ENST00000465936.5:ENST00000473809.5:ENST00000480528.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	82	2	1.8526	2.178355	2.50411	0.0332438	0.00267989	0.134145	0.0478767
chr18	9943826	9943926	6873648	0	+	0.37	(0.35,0.378]	chr18	680892	64	INTRON	INTRON	VAPA	ENSG00000101558.14	ENST00000400000.7:ENST00000340541.4:ENST00000584796.5:ENST00000583879.5:ENST00000583475.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	14	164	2	1.94299	2.1782950000000003	2.4136	0.0023472	0.00136305	0.0443878	0.0336321
chr19	50803794	50803875	7203183	0	-	0.604938	(0.57,1]	chr19	730915	4	EXON_LNCRNA	EXON_LNCRNA:INTRON	C19orf48	ENSG00000167747.16	ENST00000641834.2:ENST00000596287.6:ENST00000597705.6:ENST00000693315.1:ENST00000597493.6:ENST00000692421.1:ENST00000598463.5:ENST00000593287.5:ENST00000601267.5:ENST00000599004.1:ENST00000602125.1	transcribed_unitary_pseudogene	retained_intron	transcribed_unitary_pseudogene	retained_intron:processed_transcript	12	57	2	1.54583	2.1782	2.81057	0.0100025	0.00169295	0.084484600000000007	0.0381936
chr3	15841688	15841788	1624264	0	-	0.39	(0.378,0.408]	chr3	168034	270	INTRON	INTRON	ANKRD28	ENSG00000206560.12	ENST00000399451.6:ENST00000412318.5:ENST00000439830.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	45	2	1.89251	2.17812	2.46373	0.0382831	0.0251428	0.141795	0.133404
chr3	172154166	172154266	1560696	0	+	0.39	(0.378,0.408]	chr3	161551	52	INTRON	INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000421757.5:ENST00000469491.5:ENST00000336824.8:ENST00000423424.5:ENST00000416957.5:ENST00000478016.1:ENST00000443501.1:ENST00000476794.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	45	2	1.89251	2.17812	2.46373	0.0382831	0.0251428	0.141795	0.133404
chr1	780077	780174	33	0	+	0.42268	(0.408,0.44]	chr1	6	6	INTRON	INTRON	LINC01409	ENSG00000237491.10	ENST00000412115.2:ENST00000655765.1:ENST00000670700.1:ENST00000657896.1:ENST00000429505.6:ENST00000434264.6:ENST00000457084.1:ENST00000658648.1:ENST00000656571.1:ENST00000669749.1:ENST00000665867.1:ENST00000665719.1:ENST00000666217.1:ENST00000651411.1:ENST00000589899.5:ENST00000609830.1:ENST00000443772.2	lncRNA	lncRNA	lncRNA	lncRNA	3	36	2	2.07919	2.1780850000000003	2.27698	0.0583528	0.0291499	0.167723	0.14147
chr13	20020217	20020316	5453051	0	+	0.434343	(0.408,0.44]	chr13	522478	2	INTRON	INTRON	ZMYM2	ENSG00000121741.17	ENST00000382874.6:ENST00000610343.5:ENST00000382871.3	protein_coding	protein_coding	protein_coding	protein_coding	3	36	2	2.07919	2.1780850000000003	2.27698	0.0583528	0.0291499	0.167723	0.14147
chr13	95229523	95229623	5639153	0	-	0.42	(0.408,0.44]	chr13	537151	184	INTRON	INTRON	ABCC4	ENSG00000125257.16	ENST00000645237.2:ENST00000643051.1:ENST00000643842.1:ENST00000646439.1:ENST00000643816.1:ENST00000536256.3:ENST00000643556.1:ENST00000629385.1:ENST00000642524.1:ENST00000645532.1:ENST00000644471.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	36	2	2.07919	2.1780850000000003	2.27698	0.0583528	0.0291499	0.167723	0.14147
chr14	103394004	103394104	5825705	0	+	0.41	(0.408,0.44]	chr14	552780	2	SS5_PROX	SS5_PROX:INTRON	MARK3	ENSG00000075413.19	ENST00000678179.1:ENST00000676838.1:ENST00000677348.1:ENST00000677404.1:ENST00000676694.1:ENST00000676938.1:ENST00000678619.1:ENST00000676897.1:ENST00000677214.1:ENST00000677942.1:ENST00000676830.1:ENST00000678999.1:ENST00000677228.1:ENST00000556744.2:ENST00000677104.1:ENST00000679330.1:ENST00000560417.6:ENST00000440884.7:ENST00000676475.1:ENST00000677035.1:ENST00000678022.1:ENST00000677560.1:ENST00000561314.6:ENST00000429436.7:ENST00000677118.1:ENST00000676564.1:ENST00000678169.1:ENST00000678175.1:ENST00000678897.1:ENST00000678278.1:ENST00000676645.1:ENST00000677829.1:ENST00000678302.1:ENST00000677133.1:ENST00000561164.2:ENST00000558223.6:ENST00000559328.6:ENST00000678207.1:ENST00000677360.1:ENST00000676905.1:ENST00000678343.1:ENST00000677347.1:ENST00000678071.1:ENST00000677432.1:ENST00000678237.1:ENST00000677604.1:ENST00000676518.1:ENST00000677051.1:ENST00000677857.1:ENST00000677869.1:ENST00000678423.1:ENST00000560603.6:ENST00000416682.6:ENST00000303622.13:ENST00000216288.11:ENST00000679105.1:ENST00000553942.5:ENST00000335102.9:ENST00000561225.1:ENST00000678091.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	36	2	2.07919	2.1780850000000003	2.27698	0.0583528	0.0291499	0.167723	0.14147
chr16	74896006	74896106	6526374	0	-	0.42	(0.408,0.44]	chr16	632039	18	INTRON	INTRON	WDR59	ENSG00000103091.15	ENST00000262144.11:ENST00000563797.5:ENST00000569788.5:ENST00000563381.5:ENST00000569229.5:ENST00000566924.1:ENST00000570070.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	36	2	2.07919	2.1780850000000003	2.27698	0.0583528	0.0291499	0.167723	0.14147
chr7	73496901	73497001	3554843	0	-	0.52	(0.515,0.57]	chr7	330795	36	INTRON	INTRON	BAZ1B	ENSG00000009954.11	ENST00000339594.9:ENST00000404251.1	protein_coding	protein_coding	protein_coding	protein_coding	5	51	2	1.9459	2.17806	2.41022	0.0429089	0.00332441	0.148082	0.0528673
chr7	123747817	123747917	3632649	0	-	0.56	(0.515,0.57]	chr7	337581	382	INTRON	INTRON	WASL	ENSG00000106299.8	ENST00000223023.5	protein_coding	protein_coding	protein_coding	protein_coding	5	51	2	1.9459	2.17806	2.41022	0.0429089	0.00332441	0.148082	0.0528673
chr7	73004130	73004230	3554164	0	-	0.46	(0.44,0.476]	chr7	330670	4	SS3_PROX	SS3_PROX:INTRON	STAG3L3	ENSG00000174353.17	ENST00000436857.5:ENST00000428423.5:ENST00000448173.5:ENST00000423834.6:ENST00000569650.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	4	48	2	1.96602	2.178025	2.39003	0.0426807	0.0106488	0.148082	0.0915714
chr4	1731801	1731900	1910240	0	+	0.525253	(0.515,0.57]	chr4	191592	1	INTRON	INTRON	TACC3	ENSG00000013810.21	ENST00000651472.1:ENST00000612220.5:ENST00000484651.5:ENST00000313288.9:ENST00000652770.1:ENST00000651251.1:ENST00000650779.1:ENST00000470136.2:ENST00000651817.1:ENST00000466077.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	88	2	1.86218	2.17798	2.49378	0.0100169	0.00111893	0.0880217	0.0306963
chr14	101860475	101860575	5819500	0	+	0.41	(0.408,0.44]	chr14	551879	32	INTRON	INTRON	PPP2R5C	ENSG00000078304.20	ENST00000694906.1:ENST00000422945.6:ENST00000328724.9:ENST00000350249.7:ENST00000557621.5:ENST00000556307.5:ENST00000553730.5:ENST00000334743.9:ENST00000445439.7:ENST00000557095.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	67	2	1.44993	2.177965	2.906	0.0638951	0.00131817	0.177824	0.0333932
chr2	131282560	131282659	866207	0	+	0.464646	(0.44,0.476]	chr2	97282	28	INTRON	INTRON	PLEKHB2:FAR2P4	ENSG00000115762.17:ENSG00000231431.7	ENST00000404460.5:ENST00000560285.5	protein_coding	protein_coding	protein_coding:transcribed_unprocessed_pseudogene	protein_coding:processed_transcript	5	49	2	1.49356	2.1779349999999997	2.86231	0.0537505	0.012214	0.180803	0.0910127
chr22	42911326	42911423	7597309	0	-	0.463918	(0.44,0.476]	chr22	778175	14	INTRON	INTRON	PACSIN2	ENSG00000100266.19	ENST00000337959.8:ENST00000263246.8:ENST00000407585.5:ENST00000403744.7:ENST00000402229.5:ENST00000634914.1:ENST00000453643.5:ENST00000422336.5:ENST00000418133.5:ENST00000445706.5:ENST00000453079.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	49	2	1.49356	2.1779349999999997	2.86231	0.0537505	0.012214	0.180803	0.0910127
chr16	90198316	90198416	6424876	0	+	0.34	(0.32,0.35]	chr16	617268	37	INTRON	INTRON	LINC02193	ENSG00000260923.7	ENST00000568418.1:ENST00000656587.1:ENST00000668099.1:ENST00000569162.2:ENST00000665776.1:ENST00000669853.1:ENST00000668039.1:ENST00000658135.1:ENST00000663101.1:ENST00000663757.1:ENST00000568947.2	lncRNA	lncRNA	lncRNA	lncRNA	11	147	2	1.53419	2.1779	2.82161	0.0224259	4.20731e-4	0.124921	0.0189827
chr12	56663626	56663720	5335823	0	-	0.329787	(0.32,0.35]	chr12	510153	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	PTGES3	ENSG00000110958.16	ENST00000537473.2:ENST00000614328.4:ENST00000262033.11:ENST00000414274.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	56	711	2	2.12813	2.17789	2.22765	2.25811e-4	1.04551e-4	0.0138078	0.00863456
chr17	43139346	43139445	6613430	0	+	0.464646	(0.44,0.476]	chr17	644749	8	EXON_LNCRNA	EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NBR2	ENSG00000198496.12	ENST00000657841.1:ENST00000460115.5:ENST00000356906.7:ENST00000467245.5	lncRNA	lncRNA	lncRNA	lncRNA	5	49	2	1.43625	2.1778750000000002	2.9195	0.063142	0.0102021	0.197183	0.0850389
chr7	150282852	150282952	3673243	0	-	0.43	(0.408,0.44]	chr7	340876	334	INTRON	INTRON	ACTR3C	ENSG00000106526.11	ENST00000478393.5:ENST00000683684.1:ENST00000252071.8	protein_coding	protein_coding	protein_coding	protein_coding	6	67	2	1.66104	2.177805	2.69457	0.0349715	0.00331036	0.13747500000000001	0.0527031
chr6	147220158	147220258	2988865	0	+	0.32	(0.28,0.32]	chr6	280001	137	INTRON	INTRON	STXBP5	ENSG00000164506.15	ENST00000321680.11:ENST00000367481.7:ENST00000546097.5:ENST00000367480.7	protein_coding	protein_coding	protein_coding	protein_coding	5	74	2	1.76048	2.17776	2.59504	0.0450149	0.00582473	0.149888	0.0687439
chr1	100288402	100288502	172498	0	+	0.45	(0.44,0.476]	chr1	18774	8	INTRON	INTRON	RTCA	ENSG00000137996.13	ENST00000370128.9:ENST00000260563.4	protein_coding	protein_coding	protein_coding	protein_coding	6	71	2	1.71574	2.17768	2.63962	0.045256	0.00126329	0.149888	0.0329641
chr12	57347178	57347278	5338419	0	-	0.45	(0.44,0.476]	chr12	510710	58	INTRON	INTRON	R3HDM2	ENSG00000179912.21	ENST00000402412.6:ENST00000347140.7:ENST00000634871.1:ENST00000448732.1	protein_coding	protein_coding	protein_coding	protein_coding	4	44	2	1.61163	2.177675	2.74372	0.0598319	0.0153007	0.169278	0.108569
chr16	7950150	7950250	6440009	0	-	0.47	(0.44,0.476]	chr16	620339	554	INTRON	INTRON	ENSG00000260289	ENSG00000260289.2	ENST00000670665.1:ENST00000654046.1:ENST00000567103.2	lncRNA	lncRNA	lncRNA	lncRNA	4	44	2	1.61163	2.177675	2.74372	0.0598319	0.0153007	0.169278	0.108569
chr3	177027636	177027733	1870709	0	-	0.43299	(0.408,0.44]	chr3	187281	13	EXON_MRNA	EXON_MRNA:INTRON	TBL1XR1	ENSG00000177565.18	ENST00000636864.1:ENST00000457928.7:ENST00000430069.5:ENST00000637659.1:ENST00000474363.1:ENST00000673974.1:ENST00000631253.2:ENST00000352800.10:ENST00000422442.6:ENST00000626758.1:ENST00000636348.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	73	2	1.58763	2.177655	2.76768	0.0639217	6.71664e-4	0.177824	0.0235155
chr4	55403438	55403538	1960665	0	+	0.23	[0,0.28]	chr4	196552	1	SS5_PROX	SS5_PROX:INTRON	TMEM165	ENSG00000134851.13	ENST00000381334.10:ENST00000506198.5:ENST00000508404.5:ENST00000511710.1:ENST00000502797.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	87	2	1.89998	2.177645	2.45531	0.0599553	0.00415834	0.169548	0.0590857
chr4	82841240	82841340	2179572	0	-	0.48	(0.476,0.515]	chr4	214267	99	INTRON	INTRON	SEC31A	ENSG00000138674.17	ENST00000395310.7:ENST00000513858.5:ENST00000348405.8:ENST00000503937.5:ENST00000448323.5:ENST00000311785.11:ENST00000509142.5:ENST00000443462.6:ENST00000500777.6:ENST00000505472.5:ENST00000355196.6:ENST00000508502.5:ENST00000264405.9:ENST00000505984.5:ENST00000511338.1:ENST00000515749.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	106	2	2.07412	2.17762	2.28112	0.00700958	0.00195799	0.0718189	0.0411469
chr8	66923320	66923415	3961441	0	-	0.421053	(0.408,0.44]	chr8	363415	2	INTRON	INTRON	SNHG6	ENSG00000245910.9	ENST00000686474.1:ENST00000520944.6:ENST00000521399.6:ENST00000693345.1:ENST00000520348.6:ENST00000689720.1:ENST00000520619.1:ENST00000521127.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	3	38	2	2.05947	2.177585	2.2957	0.0516458	0.0333232	0.176696	0.134145
chr4	55425632	55425723	1960900	0	+	0.351648	(0.35,0.378]	chr4	196586	3	UTR3	UTR3:EXON_MRNA:INTRON	TMEM165	ENSG00000134851.13	ENST00000381334.10:ENST00000506198.5:ENST00000508404.5:ENST00000608091.1:ENST00000506103.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	36	425	2	2.1485	2.177565	2.20663	3.83941e-4	1.37705e-4	0.0182216	0.0101034
chr8	102362525	102362625	4012254	0	-	0.27	[0,0.28]	chr8	367237	5	INTRON	INTRON	UBR5	ENSG00000104517.13	ENST00000520539.6:ENST00000220959.8:ENST00000521922.5	protein_coding	protein_coding	protein_coding	protein_coding	5	73	2	1.80873	2.177485	2.54624	0.0388449	0.0234525	0.143072	0.128429
chr6	16137092	16137191	2825853	0	+	0.353535	(0.35,0.378]	chr6	265309	60	INTRON	INTRON	MYLIP	ENSG00000007944.15	ENST00000356840.8:ENST00000349606.4	protein_coding	protein_coding	protein_coding	protein_coding	8	88	2	1.75806	2.1773100000000003	2.59656	0.01179	0.00638551	0.0962115	0.0693551
chr6	78967746	78967845	3140943	0	-	0.343434	(0.32,0.35]	chr6	292762	13	INTRON	INTRON	PHIP	ENSG00000146247.14	ENST00000275034.5:ENST00000479165.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	51	2	1.97654	2.1772400000000003	2.37794	0.0498601	0.0199113	0.156383	0.120668
chr1	78011659	78011758	148897	0	+	0.525253	(0.515,0.57]	chr1	16588	60	INTRON	INTRON	DNAJB4	ENSG00000162616.9	ENST00000487931.1:ENST00000477671.2:ENST00000484662.1:ENST00000426517.1:ENST00000476396.1:ENST00000370763.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	31	2	1.79136	2.17721	2.56306	0.0638444	0.0247751	0.177811	0.131869
chr5	613636	613735	2313388	0	+	0.545455	(0.515,0.57]	chr5	223834	8	INTRON	INTRON	CEP72	ENSG00000112877.8	ENST00000264935.6	protein_coding	protein_coding	protein_coding	protein_coding	3	31	2	1.79136	2.17721	2.56306	0.0638444	0.0247751	0.177811	0.131869
chr1	193027674	193027774	612546	0	-	0.25	[0,0.28]	chr1	72455	4	SS5_PROX	SS5_PROX:INTRON	UCHL5	ENSG00000116750.14	ENST00000367455.8:ENST00000367454.6:ENST00000420791.5:ENST00000367450.7:ENST00000367451.8:ENST00000367449.5:ENST00000367448.5:ENST00000443327.5:ENST00000421683.1	protein_coding	protein_coding	protein_coding	protein_coding	10	164	2	1.97924	2.17718	2.37512	0.00628008	0.00450668	0.0722266	0.0595107
chr7	23439195	23439295	3503354	0	-	0.5	(0.476,0.515]	chr7	326910	80	INTRON	INTRON	IGF2BP3	ENSG00000136231.14	ENST00000258729.8:ENST00000421467.6:ENST00000468263.5:ENST00000491719.5:ENST00000476938.5:ENST00000468005.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	13	141	2	1.57761	2.17714	2.77667	0.0164218	1.08367e-4	0.10206	0.00880907
chr14	101799772	101799871	5818879	0	+	0.343434	(0.32,0.35]	chr14	551834	22	INTRON	INTRON	PPP2R5C	ENSG00000078304.20	ENST00000694906.1:ENST00000422945.6:ENST00000554442.5:ENST00000556068.5:ENST00000328724.9:ENST00000554504.1:ENST00000553890.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	107	2	2.00036	2.177125	2.35389	0.012813	0.00241005	0.0926667	0.0453511
chr15	58610011	58610106	6192100	0	-	0.4	(0.378,0.408]	chr15	589893	10	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	ADAM10	ENSG00000137845.15	ENST00000260408.8:ENST00000402627.5:ENST00000561288.1:ENST00000482945.5:ENST00000396136.6:ENST00000470269.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	53	2	1.89052	2.177125	2.46373	0.0382831	0.0148147	0.141795	0.106702
chr7	131416502	131416601	3417336	0	+	0.424242	(0.408,0.44]	chr7	319231	14	INTRON	INTRON	MKLN1	ENSG00000128585.18	ENST00000421797.6:ENST00000352689.11:ENST00000494785.5:ENST00000458153.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	90	2	2.1226	2.177105	2.23161	0.012812	0.00206564	0.0926667	0.04217
chr3	101581685	101581784	1468480	0	+	0.484848	(0.476,0.515]	chr3	153940	13	INTRON	INTRON	PCNP	ENSG00000081154.12	ENST00000265260.8:ENST00000498274.5:ENST00000460231.5:ENST00000469941.5:ENST00000486406.5:ENST00000470490.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	79	2	2.10798	2.17705	2.24612	0.00799949	0.00628634	0.0766625	0.0722266
chr12	22634559	22634658	5094836	0	+	0.393939	(0.378,0.408]	chr12	481224	85	INTRON	INTRON	ETNK1	ENSG00000139163.16	ENST00000671733.1:ENST00000335148.8:ENST00000672951.1:ENST00000266517.9:ENST00000538218.2:ENST00000673496.1:ENST00000673406.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	140	2	1.88712	2.177	2.46688	0.00832823	3.71946e-4	0.0774402	0.0173669
chr7	44578487	44578586	3528419	0	-	0.575758	(0.57,1]	chr7	329077	7	UTR3	UTR3:EXON_MRNA	TMED4	ENSG00000158604.15	ENST00000289577.9:ENST00000457408.7	protein_coding	protein_coding	protein_coding	protein_coding	8	46	2	1.64729	2.17698	2.70667	0.0231375	7.21202e-4	0.118148	0.0245208
chr1	246318571	246318670	678821	0	-	0.353535	(0.35,0.378]	chr1	79737	127	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000453676.5:ENST00000462422.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	39	2	2.10859	2.17697	2.24535	0.0647516	0.0272722	0.179192	0.136494
chr11	33868259	33868357	4941800	0	-	0.357143	(0.35,0.378]	chr11	463041	30	INTRON	INTRON	LMO2	ENSG00000135363.12	ENST00000257818.3:ENST00000395833.7:ENST00000411482.1:ENST00000465614.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	39	2	2.10859	2.17697	2.24535	0.0647516	0.0272722	0.179192	0.136494
chr15	85000836	85000936	6089120	0	+	0.37	(0.35,0.378]	chr15	579504	181	INTRON	INTRON	PDE8A	ENSG00000073417.15	ENST00000310298.8:ENST00000557957.5:ENST00000394553.6:ENST00000339708.9:ENST00000478717.5:ENST00000485596.5:ENST00000559742.5:ENST00000559086.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	39	2	2.10859	2.17697	2.24535	0.0647516	0.0272722	0.179192	0.136494
chr2	23830523	23830622	1079970	0	-	0.353535	(0.35,0.378]	chr2	115282	12	INTRON	INTRON	ATAD2B	ENSG00000119778.15	ENST00000238789.10:ENST00000474583.5:ENST00000458510.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	39	2	2.10859	2.17697	2.24535	0.0647516	0.0272722	0.179192	0.136494
chr22	38499699	38499799	7588026	0	-	0.36	(0.35,0.378]	chr22	776764	2	SS3_PROX	SS3_PROX:INTRON	DDX17	ENSG00000100201.23	ENST00000403230.3:ENST00000396821.8:ENST00000216019.11:ENST00000432525.5:ENST00000467279.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	39	2	2.10859	2.17697	2.24535	0.0647516	0.0272722	0.179192	0.136494
chr7	128752473	128752572	3408512	0	+	0.363636	(0.35,0.378]	chr7	318435	33	INTRON	INTRON	CALU	ENSG00000128595.17	ENST00000535011.6:ENST00000542996.6:ENST00000249364.9:ENST00000449187.6:ENST00000479257.5	protein_coding	protein_coding	protein_coding	protein_coding	3	39	2	2.10859	2.17697	2.24535	0.0647516	0.0272722	0.179192	0.136494
chr6	37172276	37172371	2855273	0	+	0.494737	(0.476,0.515]	chr6	269927	4	INTRON	INTRON	PIM1	ENSG00000137193.14	ENST00000373509.6	protein_coding	protein_coding	protein_coding	protein_coding	33	355	2	2.05108	2.176845	2.30261	0.00166087	3.04009e-5	0.0369207	0.00440486
chr7	105074177	105074268	3375232	0	+	0.296703	(0.28,0.32]	chr7	315913	1	SS3_PROX	SS3_PROX:INTRON	KMT2E	ENSG00000005483.22	ENST00000622386.2:ENST00000257745.9:ENST00000334884.9:ENST00000311117.8:ENST00000478990.5:ENST00000495267.5:ENST00000476671.5:ENST00000667857.1:ENST00000482560.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	103	2	1.96802	2.17683	2.38564	0.0251578	0.00230684	0.12011	0.0440898
chr3	37249400	37249500	1395813	0	+	0.43	(0.408,0.44]	chr3	146308	3	SS3_PROX	SS3_PROX:INTRON	GOLGA4	ENSG00000144674.17	ENST00000435830.6:ENST00000444882.5:ENST00000356847.8:ENST00000450863.6:ENST00000361924.7:ENST00000429018.5:ENST00000431105.1:ENST00000419177.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	14	144	2	1.9435500000000001	2.17679	2.41003	0.00211327	0.00170886	0.0415897	0.0381936
chr2	210006354	210006453	1000359	0	+	0.393939	(0.378,0.408]	chr2	107376	25	INTRON	INTRON	RPE	ENSG00000197713.15	ENST00000354506.10:ENST00000436630.6:ENST00000408981.6:ENST00000429921.5:ENST00000454822.5:ENST00000453724.5:ENST00000359429.11:ENST00000438265.5:ENST00000429907.5:ENST00000438204.6:ENST00000452025.5:ENST00000445268.5:ENST00000441588.5:ENST00000438191.1:ENST00000411934.6:ENST00000435437.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	55	2	1.64169	2.17676	2.71183	0.0377255	0.0170789	0.14078	0.110899
chr6	110891082	110891180	2939111	0	+	0.438776	(0.408,0.44]	chr6	276780	4	EXON_MRNA	EXON_MRNA:INTRON	AMD1	ENSG00000123505.19	ENST00000451850.6:ENST00000675380.1:ENST00000368882.8:ENST00000672937.2:ENST00000368885.8:ENST00000368877.9:ENST00000368876.2:ENST00000612642.4:ENST00000619590.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	99	2	1.5285	2.176555	2.82461	0.0146221	0.00241819	0.106187	0.0442901
chrX	154797952	154798051	7915536	0	-	0.313131	(0.28,0.32]	chrX	806172	53	INTRON	INTRON	MPP1	ENSG00000130830.15	ENST00000369534.8:ENST00000413259.7:ENST00000439370.5:ENST00000393531.5:ENST00000453245.5:ENST00000494170.1:ENST00000462825.5:ENST00000393529.5:ENST00000475943.5:ENST00000428488.1:ENST00000417435.5:ENST00000369531.1:ENST00000471821.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	89	2	1.96802	2.17653	2.38504	0.0251578	0.00475871	0.12011	0.0636201
chr19	9666257	9666357	7133416	0	-	0.42	(0.408,0.44]	chr19	718911	50	INTRON	INTRON	ZNF562	ENSG00000171466.10	ENST00000453372.7:ENST00000293648.8:ENST00000590155.5:ENST00000585688.5:ENST00000587392.5:ENST00000588653.5:ENST00000589542.1:ENST00000585350.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	44	2	1.53263	2.176525	2.82042	0.0733439	0.0120121	0.190051	0.0962115
chr1	21131305	21131405	393174	0	-	0.3	(0.28,0.32]	chr1	46836	183	INTRON	INTRON	EIF4G3	ENSG00000075151.24	ENST00000374935.7:ENST00000602326.6:ENST00000685872.1:ENST00000686579.1:ENST00000688741.1:ENST00000400422.6:ENST00000634879.2:ENST00000693470.1:ENST00000685814.1:ENST00000356916.7:ENST00000682284.1:ENST00000438975.5:ENST00000411888.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	45	2	2.0243	2.176505	2.32871	0.0581621	0.0364967	0.167723	0.153759
chr1	65431402	65431502	137296	0	+	0.3	(0.28,0.32]	chr1	15490	2	SS3_PROX	SS3_PROX:INTRON	LEPROT:LEPR	ENSG00000213625.9:ENSG00000116678.20	ENST00000475108.5:ENST00000371060.7:ENST00000371059.7:ENST00000349533.11:ENST00000371065.9:ENST00000488747.5:ENST00000613538.1	protein_coding	protein_coding	protein_coding	protein_coding	3	45	2	2.0243	2.176505	2.32871	0.0581621	0.0364967	0.167723	0.153759
chr20	38065580	38065679	7269200	0	+	0.292929	(0.28,0.32]	chr20	738704	1	SS3_PROX	SS3_PROX:INTRON	RPRD1B	ENSG00000101413.12	ENST00000462548.6:ENST00000373433.9:ENST00000449186.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	45	2	2.0243	2.176505	2.32871	0.0581621	0.0364967	0.167723	0.153759
chr4	39742276	39742375	1953434	0	+	0.313131	(0.28,0.32]	chr4	195636	44	INTRON	INTRON	UBE2K	ENSG00000078140.14	ENST00000510934.5:ENST00000261427.10:ENST00000438068.6:ENST00000513231.5:ENST00000503368.5:ENST00000445950.2:ENST00000510719.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	45	2	2.0243	2.176505	2.32871	0.0581621	0.0364967	0.167723	0.153759
chr8	38269801	38269900	3936264	0	-	0.282828	(0.28,0.32]	chr8	360690	2	UTR3	UTR3:EXON_MRNA	NSD3	ENSG00000147548.17	ENST00000317025.13	protein_coding	protein_coding	protein_coding	protein_coding	3	45	2	2.0243	2.176505	2.32871	0.0581621	0.0364967	0.167723	0.153759
chr22	41852741	41852841	7526194	0	+	0.43	(0.408,0.44]	chr22	769353	190	INTRON	INTRON	SREBF2	ENSG00000198911.12	ENST00000612482.4:ENST00000361204.9:ENST00000424354.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	16	172	2	2.15238	2.1764349999999997	2.20049	0.00382586	3.19945e-4	0.0542786	0.0159645
chr14	31019127	31019226	5857801	0	-	0.444444	(0.44,0.476]	chr14	556512	40	INTRON	INTRON	STRN3	ENSG00000196792.12	ENST00000355683.9:ENST00000357479.10:ENST00000555358.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	60	2	1.37831	2.1764099999999997	2.97451	0.0447298	0.00853825	0.163255	0.0780043
chrX	77901643	77901743	7684964	0	+	0.31	(0.28,0.32]	chrX	786809	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	COX7B	ENSG00000131174.7	ENST00000373335.4:ENST00000475465.1:ENST00000650309.2:ENST00000647835.1	protein_coding	protein_coding	protein_coding	protein_coding	10	134	2	1.40097	2.176345	2.95172	0.0438137	3.7205e-4	0.149021	0.0173669
chr7	75029350	75029449	3337031	0	+	0.464646	(0.44,0.476]	chr7	310610	48	UTR3	UTR3:EXON_MRNA	CASTOR2	ENSG00000274070.2	ENST00000616305.2	protein_coding	protein_coding	protein_coding	protein_coding	5	59	2	1.75627	2.176295	2.59632	0.0380723	0.00579248	0.157702	0.0662959
chr14	21223755	21223854	5834700	0	-	0.292929	(0.28,0.32]	chr14	554424	103	INTRON	INTRON	HNRNPC	ENSG00000092199.19	ENST00000336053.10:ENST00000553300.6:ENST00000554969.5:ENST00000556142.5:ENST00000554455.5:ENST00000430246.6:ENST00000553753.5:ENST00000555309.5:ENST00000555914.5:ENST00000557442.5:ENST00000556628.5:ENST00000556513.5:ENST00000555883.5:ENST00000557201.5:ENST00000556897.5:ENST00000420743.6:ENST00000557157.5:ENST00000554539.5:ENST00000554383.5:ENST00000554417.1:ENST00000555215.5:ENST00000555137.5:ENST00000554891.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	45	2	1.83771	2.1762949999999996	2.51488	0.0591725	0.0380957	0.189982	0.141678
chr7	7972899	7972998	3279029	0	+	0.282828	(0.28,0.32]	chr7	304749	20	INTRON	INTRON	GLCCI1	ENSG00000106415.13	ENST00000223145.10:ENST00000430798.1:ENST00000414914.5:ENST00000492797.5:ENST00000460897.1:ENST00000470583.5:ENST00000474269.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	45	2	1.83771	2.1762949999999996	2.51488	0.0591725	0.0380957	0.189982	0.141678
chr9	105735995	105736095	4182959	0	+	0.32	(0.28,0.32]	chr9	381513	130	INTRON	INTRON	TMEM38B	ENSG00000095209.12	ENST00000374692.8:ENST00000374688.5:ENST00000435034.5:ENST00000451560.1	protein_coding	protein_coding	protein_coding	protein_coding	3	45	2	1.83771	2.1762949999999996	2.51488	0.0591725	0.0380957	0.189982	0.141678
chr16	21465807	21465905	6461000	0	-	0.397959	(0.378,0.408]	chr16	623309	6	INTRON	INTRON	SMG1P3	ENSG00000180747.15	ENST00000520823.6:ENST00000522480.5:ENST00000522841.6	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	3	37	2	2.04292	2.176265	2.30961	0.055088	0.0326035	0.165463	0.145164
chr19	15381258	15381357	7147735	0	-	0.40404	(0.378,0.408]	chr19	722071	5	EXON_LNCRNA	EXON_LNCRNA:INTRON	AKAP8L	ENSG00000011243.19	ENST00000594594.6:ENST00000679638.1:ENST00000595465.6:ENST00000599137.6:ENST00000397410.10:ENST00000609519.5:ENST00000593845.5:ENST00000680649.1:ENST00000596213.6:ENST00000681170.1:ENST00000680703.1:ENST00000680017.1:ENST00000595879.6:ENST00000680303.1:ENST00000679634.1:ENST00000681744.1:ENST00000680803.1:ENST00000681459.1:ENST00000680323.1:ENST00000680774.1:ENST00000680302.1:ENST00000680103.1:ENST00000680642.1:ENST00000681405.1:ENST00000680957.1:ENST00000680865.1:ENST00000680363.1:ENST00000595087.6:ENST00000600065.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	37	2	2.04292	2.176265	2.30961	0.055088	0.0326035	0.165463	0.145164
chr2	171116340	171116440	1263652	0	-	0.38	(0.378,0.408]	chr2	133913	247	INTRON	INTRON	TLK1	ENSG00000198586.14	ENST00000431350.7:ENST00000360843.7:ENST00000359766.7:ENST00000521943.5:ENST00000409443.6:ENST00000413010.5:ENST00000470340.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	37	2	2.04292	2.176265	2.30961	0.055088	0.0326035	0.165463	0.145164
chr6	35377318	35377418	2852326	0	+	0.39	(0.378,0.408]	chr6	269491	298	INTRON	INTRON	PPARD	ENSG00000112033.14	ENST00000418635.6:ENST00000448077.6:ENST00000360694.8:ENST00000311565.4:ENST00000337400.6	protein_coding	protein_coding	protein_coding	protein_coding	3	37	2	2.04292	2.176265	2.30961	0.055088	0.0326035	0.165463	0.145164
chr17	66323108	66323208	6662502	0	+	0.4	(0.378,0.408]	chr17	650320	166	INTRON	INTRON	PRKCA	ENSG00000154229.12	ENST00000413366.8:ENST00000578063.5:ENST00000583361.1:ENST00000284384.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	60	2	2.04622	2.17625	2.30628	0.0163339	0.0149927	0.107704	0.101571
chr8	102349189	102349288	4012116	0	-	0.424242	(0.408,0.44]	chr8	367218	17	INTRON	INTRON	UBR5	ENSG00000104517.13	ENST00000520539.6:ENST00000220959.8:ENST00000521922.5	protein_coding	protein_coding	protein_coding	protein_coding	11	114	2	1.99013	2.176205	2.36228	0.00528443	0.00217704	0.0635846	0.0435144
chr2	30259739	30259835	726176	0	+	0.552083	(0.515,0.57]	chr2	83954	23	UTR3	UTR3:EXON_MRNA:INTRON	LBH	ENSG00000213626.13	ENST00000395323.9:ENST00000404397.5	protein_coding	protein_coding	protein_coding	protein_coding	3	31	2	2.11313	2.17614	2.23915	0.0596178	0.0256725	0.16883600000000001	0.133676
chr5	131282933	131283033	2484825	0	+	0.54	(0.515,0.57]	chr5	237114	184	INTRON	INTRON	CDC42SE2	ENSG00000158985.14	ENST00000502840.5:ENST00000511432.5:ENST00000506419.5:ENST00000395246.5:ENST00000505065.2:ENST00000504701.5:ENST00000503291.5:ENST00000360515.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	31	2	2.11313	2.17614	2.23915	0.0596178	0.0256725	0.16883600000000001	0.133676
chr21	34099333	34099432	7401352	0	+	0.393939	(0.378,0.408]	chr21	753974	21	UTR3	UTR3:EXON_MRNA:INTRON	MRPS6:SLC5A3	ENSG00000243927.6:ENSG00000198743.7	ENST00000488492.5:ENST00000477091.5:ENST00000399312.3:ENST00000381151.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	130	2	1.84742	2.1759649999999997	2.50451	0.013385	3.00415e-4	0.0946278	0.0155054
chr7	76353623	76353722	3562488	0	-	0.313131	(0.28,0.32]	chr7	331942	230	INTRON	INTRON	YWHAG	ENSG00000170027.7	ENST00000307630.5	protein_coding	protein_coding	protein_coding	protein_coding	3	48	2	2.05458	2.17591	2.29724	0.0554156	0.0381508	0.18407	0.141764
chr6	169664769	169664849	3266741	0	-	0.375	(0.35,0.378]	chr6	303213	1	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	WDR27	ENSG00000184465.16	ENST00000448612.6:ENST00000648472.1:ENST00000423258.5:ENST00000647790.1:ENST00000546525.5:ENST00000647873.1:ENST00000649303.1:ENST00000647889.1:ENST00000648017.1:ENST00000486490.1:ENST00000476322.1:ENST00000496752.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	63	2	2.07049	2.1758699999999997	2.28125	0.0182271	0.0140397	0.107842	0.102801
chr12	111580466	111580566	5413044	0	-	0.45	(0.44,0.476]	chr12	516941	157	INTRON	INTRON	ATXN2	ENSG00000204842.18	ENST00000642389.2:ENST00000608853.5:ENST00000672613.1:ENST00000673436.1:ENST00000643669.2:ENST00000616825.4:ENST00000389153.10:ENST00000550104.5:ENST00000483311.6:ENST00000672335.1:ENST00000673557.1:ENST00000673283.1:ENST00000673449.1:ENST00000535949.5:ENST00000542287.6:ENST00000644883.1:ENST00000647305.1:ENST00000671792.1:ENST00000392645.6:ENST00000672105.1:ENST00000549455.1:ENST00000548492.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	12	132	2	2.06568	2.175865	2.28605	0.00206758	0.00202294	0.0416117	0.0411504
chr17	46143426	46143526	6784370	0	-	0.41	(0.408,0.44]	chr17	669216	222	INTRON	INTRON	KANSL1	ENSG00000120071.15	ENST00000574590.6:ENST00000572904.6:ENST00000432791.7:ENST00000575318.6:ENST00000638275.1:ENST00000262419.10:ENST00000648792.1:ENST00000639531.1:ENST00000639150.1:ENST00000639853.1:ENST00000571698.2:ENST00000639375.1:ENST00000638269.1:ENST00000576248.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	92	2	1.62843	2.17583	2.72323	0.025242	0.00114246	0.133676	0.0307966
chr3	37266441	37266541	1395986	0	+	0.5	(0.476,0.515]	chr3	146320	2	SS3_PROX	SS3_PROX:INTRON	GOLGA4	ENSG00000144674.17	ENST00000435830.6:ENST00000444882.5:ENST00000356847.8:ENST00000450863.6:ENST00000361924.7:ENST00000429018.5:ENST00000431105.1:ENST00000419177.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	15	163	2	2.14482	2.17579	2.20676	0.00251871	5.17055e-4	0.0446195	0.0203753
chr10	87871610	87871709	4483006	0	+	0.474747	(0.44,0.476]	chr10	412543	47	INTRON	INTRON	PTEN	ENSG00000171862.12	ENST00000688308.1:ENST00000693560.1:ENST00000371953.8:ENST00000688158.1:ENST00000686459.1:ENST00000462694.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	49	2	1.54868	2.1757150000000003	2.80275	0.0457575	0.0146513	0.164677	0.0982604
chr5	70201567	70201667	2637921	0	-	0.47	(0.44,0.476]	chr5	250589	3	SS5_PROX	SS5_PROX:INTRON	ENSG00000254701	ENSG00000254701.3	ENST00000508650.2	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	5	49	2	1.54868	2.1757150000000003	2.80275	0.0457575	0.0146513	0.164677	0.0982604
chr10	125140747	125140847	4714145	0	-	0.43	(0.408,0.44]	chr10	434933	26	INTRON	INTRON	CTBP2	ENSG00000175029.17	ENST00000337195.9:ENST00000411419.6:ENST00000494626.6:ENST00000531469.5:ENST00000460976.5:ENST00000476817.1:ENST00000530884.1:ENST00000467395.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	97	2	1.92735	2.175695	2.42404	0.00550465	0.00413548	0.0672816	0.0566868
chr1	30954381	30954481	411762	0	-	0.41	(0.408,0.44]	chr1	49652	4	SS3_PROX	SS3_PROX:INTRON	PUM1	ENSG00000134644.16	ENST00000426105.7:ENST00000373747.7:ENST00000257075.9:ENST00000424085.6:ENST00000525843.5:ENST00000440538.6:ENST00000498419.5:ENST00000373741.8:ENST00000373742.6:ENST00000527498.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	60	2	1.29431	2.17568	3.05705	0.0580322	0.00658331	0.188651	0.0701901
chr22	20548748	20548847	7479765	0	+	0.424242	(0.408,0.44]	chr22	762972	112	INTRON	INTRON	MED15	ENSG00000099917.17	ENST00000445987.5:ENST00000444094.5:ENST00000414658.5:ENST00000486656.5:ENST00000433831.5:ENST00000432052.5:ENST00000292733.11:ENST00000263205.11:ENST00000477824.5:ENST00000406969.5:ENST00000382974.6:ENST00000441501.5:ENST00000445189.5:ENST00000451058.5:ENST00000473028.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	125	2	1.65543	2.17568	2.69593	0.0193369	1.71843e-4	0.108861	0.0113605
chr6	154766794	154766894	3002151	0	+	0.42	(0.408,0.44]	chr6	280737	244	INTRON	INTRON	SCAF8	ENSG00000213079.10	ENST00000367186.7:ENST00000417268.3:ENST00000461219.5:ENST00000367178.8:ENST00000464628.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	60	2	1.29431	2.17568	3.05705	0.0580322	0.00658331	0.188651	0.0701901
chr17	81600927	81601024	6849235	0	-	0.463918	(0.44,0.476]	chr17	678187	1	INTRON	INTRON	NPLOC4	ENSG00000182446.14	ENST00000331134.11:ENST00000374747.9:ENST00000574897.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	36	2	1.77101	2.17567	2.58033	0.0693975	0.0247511	0.184298	0.131869
chr19	3753570	3753667	7118373	0	-	0.463918	(0.44,0.476]	chr19	715900	7	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	APBA3	ENSG00000011132.12	ENST00000316757.4:ENST00000588984.5:ENST00000590064.1:ENST00000592826.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	36	2	1.77101	2.17567	2.58033	0.0693975	0.0247511	0.184298	0.131869
chr9	127459660	127459749	4200385	0	+	0.460674	(0.44,0.476]	chr9	383475	2	INTRON	INTRON	LRSAM1	ENSG00000148356.15	ENST00000675224.1:ENST00000373324.8:ENST00000674771.1:ENST00000675641.1:ENST00000498513.6:ENST00000675572.1:ENST00000300417.11:ENST00000674784.1:ENST00000675789.1:ENST00000676349.1:ENST00000676336.1:ENST00000676170.1:ENST00000675448.1:ENST00000323301.8:ENST00000675141.1:ENST00000472068.2:ENST00000674516.1:ENST00000675883.1:ENST00000676014.1:ENST00000674970.1:ENST00000675253.1:ENST00000675657.1:ENST00000676318.1:ENST00000675945.1:ENST00000675213.1:ENST00000373322.1:ENST00000675445.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	36	2	1.77101	2.17567	2.58033	0.0693975	0.0247511	0.184298	0.131869
chr10	73061765	73061865	4647490	0	-	0.33	(0.32,0.35]	chr10	427530	78	INTRON	INTRON	P4HA1	ENSG00000122884.13	ENST00000394890.7:ENST00000307116.6:ENST00000373008.6:ENST00000440381.5:ENST00000263556.3	protein_coding	protein_coding	protein_coding	protein_coding	30	386	2	2.00607	2.17558	2.34509	0.00147278	8.08264e-5	0.0348477	0.00751576
chr6	26121717	26121817	3070841	0	-	0.49	(0.476,0.515]	chr6	285403	62	INTRON	INTRON	H2BC4	ENSG00000180596.8	ENST00000314332.5	protein_coding	protein_coding	protein_coding	protein_coding	10	104	2	1.59826	2.17556	2.75286	0.0184438	7.3224e-4	0.108861	0.0246502
chr2	177213518	177213618	925922	0	+	0.31	(0.28,0.32]	chr2	101735	1	SS5_PROX	SS5_PROX:INTRON	HNRNPA3	ENSG00000170144.21	ENST00000392524.6:ENST00000679159.1:ENST00000678111.1:ENST00000678421.1:ENST00000677863.1:ENST00000676681.1:ENST00000676629.1:ENST00000677337.1:ENST00000676488.1:ENST00000677043.1:ENST00000676874.1:ENST00000676762.1:ENST00000411529.6:ENST00000676736.1:ENST00000483137.2:ENST00000677508.1:ENST00000435711.5:ENST00000679328.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	46	2	1.81582	2.1755199999999997	2.53522	0.068122	0.0310424	0.184298	0.143457
chr15	40741283	40741381	6151217	0	-	0.408163	(0.378,0.408]	chr15	585114	7	INTRON	INTRON	RMDN3	ENSG00000137824.16	ENST00000260385.10:ENST00000338376.8:ENST00000558777.5:ENST00000558232.5:ENST00000560779.5:ENST00000558560.1:ENST00000560460.5:ENST00000558364.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	50	2	1.88729	2.17537	2.46345	0.0532327	0.00827342	0.162538	0.0813266
chr10	74105553	74105653	4455598	0	+	0.5	(0.476,0.515]	chr10	411484	2	SS5_PROX	SS5_PROX:INTRON	VCL	ENSG00000035403.18	ENST00000623461.3:ENST00000372755.7:ENST00000624354.3:ENST00000211998.10:ENST00000472585.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	69	2	2.05714	2.175365	2.29359	0.0156961	0.00584957	0.101453	0.0689807
chr4	174303402	174303502	2082778	0	+	0.34	(0.32,0.35]	chr4	205825	3	SS3_PROX	SS3_PROX:INTRON	CEP44	ENSG00000164118.13	ENST00000505124.5:ENST00000457424.6:ENST00000396791.7:ENST00000503780.6:ENST00000514712.5:ENST00000515299.5:ENST00000503053.5:ENST00000426172.3:ENST00000296519.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	64	2	1.50258	2.17535	2.84812	0.0399817	0.0147575	0.161534	0.0983813
chr15	44413798	44413896	6014329	0	+	0.387755	(0.378,0.408]	chr15	572908	5	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	GOLM2	ENSG00000166734.20	ENST00000299957.11:ENST00000650436.1:ENST00000345795.6:ENST00000561305.1	protein_coding	protein_coding	protein_coding	protein_coding	17	199	2	1.99845	2.175345	2.35224	0.00165935	5.36982e-4	0.0376822	0.0214775
chr1	26718117	26718217	51392	0	+	0.53	(0.515,0.57]	chr1	6542	202	INTRON	INTRON	ARID1A	ENSG00000117713.21	ENST00000430799.7:ENST00000324856.13:ENST00000637465.1:ENST00000457599.6	protein_coding	protein_coding	protein_coding	protein_coding	7	63	2	1.38593	2.1753	2.96467	0.0554883	8.94279e-4	0.165463	0.0273458
chr5	53949818	53949918	2617302	0	-	0.31	(0.28,0.32]	chr5	248835	378	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	77	2	1.81582	2.1752849999999997	2.53475	0.068122	0.00257029	0.184298	0.0466761
chr19	54206075	54206175	7098885	0	+	0.56	(0.515,0.57]	chr19	711941	4	SS3_PROX	SS3_PROX:INTRON	RPS9	ENSG00000170889.14	ENST00000484121.5:ENST00000448962.5:ENST00000302907.9:ENST00000626547.2:ENST00000436445.5:ENST00000391752.5:ENST00000402367.5:ENST00000445961.5:ENST00000391751.7:ENST00000495002.5:ENST00000391753.6:ENST00000441429.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	65	2	1.67758	2.17526	2.67294	0.0471728	0.00112534	0.168737	0.0306963
chr22	41840552	41840652	7526072	0	+	0.37	(0.35,0.378]	chr22	769353	68	INTRON	INTRON	SREBF2	ENSG00000198911.12	ENST00000612482.4:ENST00000361204.9:ENST00000424354.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	67	2	1.56836	2.17524	2.78212	0.0240966	0.0168532	0.129929	0.103549
chr19	28502739	28502839	7166122	0	-	0.41	(0.408,0.44]	chr19	724189	345	INTRON	INTRON	ENSG00000283403:ENSG00000267243	ENSG00000283403.1:ENSG00000267243.6	ENST00000592347.5:ENST00000593065.5	lncRNA	lncRNA	lncRNA	lncRNA	9	102	2	2.03896	2.1752399999999996	2.31152	0.00968464	0.00139382	0.0828348	0.0341355
chr8	31038472	31038572	3727978	0	+	0.28	[0,0.28]	chr8	346522	41	INTRON	INTRON	WRN	ENSG00000165392.11	ENST00000650667.1:ENST00000298139.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	70	2	1.89998	2.1752	2.45042	0.0599553	0.010819	0.169548	0.0920575
chr1	43736924	43737024	86380	0	+	0.4	(0.378,0.408]	chr1	11651	6	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	ST3GAL3	ENSG00000126091.21	ENST00000646096.1:ENST00000532911.6:ENST00000643597.1:ENST00000643886.1:ENST00000372372.7:ENST00000545417.5:ENST00000330208.6:ENST00000335430.10:ENST00000361400.9:ENST00000347631.8:ENST00000642331.1:ENST00000647237.1:ENST00000643252.1:ENST00000372374.7:ENST00000361392.9:ENST00000646109.1:ENST00000533997.6:ENST00000353126.8:ENST00000645640.1:ENST00000642934.1:ENST00000643283.1:ENST00000351035.8:ENST00000642949.1:ENST00000489897.6:ENST00000646971.1:ENST00000645142.1:ENST00000645705.1:ENST00000530154.5:ENST00000646027.1:ENST00000646069.1:ENST00000642504.1:ENST00000647148.1:ENST00000262915.8:ENST00000479383.6:ENST00000647482.1:ENST00000646776.1:ENST00000645394.1:ENST00000647128.1:ENST00000484868.2:ENST00000461066.6:ENST00000361746.9:ENST00000645034.1:ENST00000645165.1:ENST00000647134.1:ENST00000644195.1:ENST00000642194.1:ENST00000372368.7:ENST00000646686.1:ENST00000372366.6:ENST00000361812.9:ENST00000469715.6:ENST00000372369.5:ENST00000372367.5:ENST00000372365.5:ENST00000528371.5:ENST00000533212.5:ENST00000530581.5:ENST00000531816.1:ENST00000531993.6:ENST00000490541.6:ENST00000372362.6:ENST00000531451.5:ENST00000646416.1:ENST00000645117.1:ENST00000533933.6:ENST00000332628.11:ENST00000643813.1:ENST00000644922.1:ENST00000644287.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	50	2	2.11194	2.175125	2.23831	0.0292534	0.0179575	0.128055	0.114265
chr6	89804552	89804652	3161887	0	-	0.38	(0.378,0.408]	chr6	294886	6	INTRON	INTRON	MDN1	ENSG00000112159.12	ENST00000369393.8:ENST00000629399.2:ENST00000439638.1	protein_coding	protein_coding	protein_coding	protein_coding	4	50	2	2.11194	2.175125	2.23831	0.0292534	0.0179575	0.128055	0.114265
chr14	21254893	21254993	5835021	0	-	0.35	(0.32,0.35]	chr14	554464	3	SS3_PROX	SS3_PROX:INTRON	HNRNPC	ENSG00000092199.19	ENST00000336053.10:ENST00000553300.6:ENST00000554969.5:ENST00000556142.5:ENST00000554455.5:ENST00000430246.6:ENST00000553753.5:ENST00000555309.5:ENST00000555914.5:ENST00000557442.5:ENST00000556628.5:ENST00000556513.5:ENST00000555883.5:ENST00000557201.5:ENST00000556897.5:ENST00000420743.6:ENST00000554539.5:ENST00000554383.5:ENST00000555215.5:ENST00000555137.5:ENST00000554891.5:ENST00000556226.5:ENST00000555176.5:ENST00000553614.5:ENST00000557336.1:ENST00000557768.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	146	2	2.02531	2.1750800000000003	2.32485	0.00401813	0.00229938	0.0578189	0.0428247
chr16	75013967	75014067	6389568	0	+	0.49	(0.476,0.515]	chr16	614482	112	INTRON	INTRON	ZNRF1	ENSG00000186187.12	ENST00000335325.9:ENST00000320619.10:ENST00000567962.5:ENST00000566250.5:ENST00000564320.1:ENST00000568511.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	111	2	1.50914	2.175015	2.84089	0.0212469	4.67054e-4	0.11322	0.0195793
chr22	21506849	21506949	7560159	0	-	0.52	(0.515,0.57]	chr22	773318	144	INTRON	INTRON	PI4KAP2	ENSG00000183506.17	ENST00000450651.5:ENST00000467443.5:ENST00000479693.1:ENST00000476537.1:ENST00000491562.5	transcribed_unitary_pseudogene	retained_intron	transcribed_unitary_pseudogene	retained_intron:processed_transcript	11	101	2	1.91091	2.17496	2.43901	0.00389995	0.00146205	0.0569466	0.0346249
chr8	55900479	55900579	3754541	0	+	0.42	(0.408,0.44]	chr8	349249	200	INTRON	INTRON	LYN	ENSG00000254087.8	ENST00000519728.6:ENST00000520220.6	protein_coding	protein_coding	protein_coding	protein_coding	4	43	2	1.69566	2.17493	2.6542	0.0453922	0.0227514	0.164236	0.117618
chr1	90972452	90972552	502030	0	-	0.41	(0.408,0.44]	chr1	59492	308	INTRON	INTRON	ZNF644	ENSG00000122482.22	ENST00000370440.5:ENST00000337393.10:ENST00000347275.9:ENST00000361321.5:ENST00000467231.5:ENST00000498303.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	43	2	1.6306	2.174855	2.71911	0.0544158	0.0189489	0.182272	0.108861
chr2	86474990	86475090	823285	0	+	0.41	(0.408,0.44]	chr2	91967	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	KDM3A	ENSG00000115548.17	ENST00000409556.5:ENST00000312912.10:ENST00000441719.5:ENST00000409064.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	43	2	1.6306	2.174855	2.71911	0.0544158	0.0189489	0.182272	0.108861
chr6	18263642	18263742	3069242	0	-	0.4	(0.378,0.408]	chr6	285215	4	SS5_PROX	SS5_PROX:INTRON	DEK	ENSG00000124795.17	ENST00000652689.1:ENST00000651624.1:ENST00000515770.2:ENST00000651992.1:ENST00000507591.2:ENST00000505224.5:ENST00000244776.11:ENST00000652576.1:ENST00000503715.5:ENST00000515742.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	69	2	1.48005	2.1748	2.86955	0.0596711	0.00159247	0.168954	0.0367961
chr3	119502539	119502637	1485422	0	+	0.418367	(0.408,0.44]	chr3	155162	13	INTRON	INTRON	TIMMDC1	ENSG00000113845.10	ENST00000494664.6:ENST00000493694.1:ENST00000264244.7:ENST00000486418.5:ENST00000492164.5:ENST00000466984.1:ENST00000463927.6:ENST00000498399.1:ENST00000469324.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	82	2	2.1269	2.17479	2.22268	0.00770925	0.00691204	0.0784002	0.0718189
chr1	145995839	145995916	541115	0	-	0.402597	(0.378,0.408]	chr1	63487	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TXNIP	ENSG00000265972.6	ENST00000582401.6	protein_coding	protein_coding	protein_coding	protein_coding	12	100	2	1.68165	2.17475	2.66785	0.0224639	0.0054901	0.11692	0.0672178
chr15	81851248	81851347	6243816	0	-	0.40404	(0.378,0.408]	chr15	595867	325	INTRON	INTRON	ENSG00000259692	ENSG00000259692.6	ENST00000559428.2:ENST00000560054.6:ENST00000560097.1:ENST00000559299.2	lncRNA	lncRNA	lncRNA	lncRNA	6	69	2	1.60295	2.174705	2.74646	0.0422859	0.00271684	0.148082	0.0481064
chr7	66706371	66706471	3325131	0	+	0.46	(0.44,0.476]	chr7	309221	208	INTRON	INTRON	RABGEF1	ENSG00000154710.18	ENST00000607882.5	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	8	91	2	2.12263	2.17457	2.22651	0.00692375	0.00376161	0.0718189	0.0562562
chr15	92910517	92910616	6103795	0	+	0.484848	(0.476,0.515]	chr15	581401	15	INTRON	INTRON	ENSG00000279765:CHD2	ENSG00000279765.3:ENSG00000173575.22	ENST00000629685.2:ENST00000630790.1:ENST00000626874.2:ENST00000394196.9:ENST00000635856.1:ENST00000420239.7:ENST00000628375.2:ENST00000625990.3:ENST00000626782.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	73	2	1.80755	2.17456	2.54157	0.0131326	0.00697457	0.0999551	0.0718189
chr4	1695240	1695340	2095049	0	-	0.37	(0.35,0.378]	chr4	207197	4	SS3_PROX	SS3_PROX:INTRON	SLBP	ENSG00000163950.13	ENST00000489418.6:ENST00000429429.6:ENST00000318386.8:ENST00000483348.5:ENST00000488267.5	protein_coding	protein_coding	protein_coding	protein_coding	5	63	2	2.15877	2.174555	2.19034	0.023941	0.0102036	0.119443	0.089002
chr5	43477537	43477635	2614775	0	-	0.44898	(0.44,0.476]	chr5	248558	9	INTRON	INTRON	TMEM267	ENSG00000151881.15	ENST00000397080.8:ENST00000500337.6:ENST00000512085.5:ENST00000511525.1:ENST00000510130.1:ENST00000506860.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	48	2	1.9039	2.17452	2.44514	0.0501498	0.0087381	0.156383	0.0845538
chr3	37310323	37310423	1396435	0	+	0.35	(0.32,0.35]	chr3	146385	76	INTRON	INTRON	GOLGA4	ENSG00000144674.17	ENST00000435830.6:ENST00000444882.5:ENST00000356847.8:ENST00000450863.6:ENST00000361924.7:ENST00000429018.5:ENST00000437131.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	56	2	1.99307	2.17449	2.35591	0.04271	0.0128129	0.148082	0.0990564
chr7	111413296	111413396	3622619	0	-	0.33	(0.32,0.35]	chr7	337108	205	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000452895.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding	4	56	2	1.99307	2.17449	2.35591	0.04271	0.0128129	0.148082	0.0990564
chr18	51042668	51042768	6901746	0	+	0.46	(0.44,0.476]	chr18	683840	117	INTRON	INTRON	SMAD4	ENSG00000141646.15	ENST00000588860.5:ENST00000398417.6:ENST00000589076.5:ENST00000342988.8:ENST00000590061.1:ENST00000592911.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	58	2	1.90381	2.174475	2.44514	0.0260626	0.0087381	0.122153	0.0845538
chr5	32598073	32598172	2334881	0	+	0.414141	(0.408,0.44]	chr5	225370	33	EXON_MRNA	EXON_MRNA:INTRON	SUB1	ENSG00000113387.12	ENST00000506237.5:ENST00000512913.5:ENST00000513013.5:ENST00000265073.9:ENST00000511615.5:ENST00000515355.5:ENST00000502897.5:ENST00000504789.5:ENST00000504016.1:ENST00000511175.1:ENST00000502453.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	71	2	1.74108	2.174465	2.60785	0.0424099	0.00146754	0.148082	0.035104
chr18	73252416	73252511	6988499	0	-	0.273684	[0,0.28]	chr18	691709	11	EXON_LNCRNA	EXON_LNCRNA:INTRON	LINC02864	ENSG00000263711.6	ENST00000584544.5:ENST00000581011.5:ENST00000581862.6:ENST00000669547.1:ENST00000661525.1:ENST00000583405.5:ENST00000582571.2:ENST00000667943.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	7	87	2	1.37274	2.17445	2.97616	0.0517795	0.0128425	0.176696	0.0926667
chr6	47525910	47526010	2874047	0	+	0.36	(0.35,0.378]	chr6	272731	221	INTRON	INTRON	CD2AP	ENSG00000198087.7	ENST00000359314.5	protein_coding	protein_coding	protein_coding	protein_coding	4	48	2	2.02424	2.174335	2.32443	0.0544216	0.0164934	0.164972	0.110301
chr7	127354389	127354489	3633857	0	-	0.33	(0.32,0.35]	chr7	337747	42	INTRON	INTRON	ZNF800	ENSG00000048405.11	ENST00000485577.1	protein_coding	processed_transcript	protein_coding	processed_transcript	8	104	2	1.5852	2.1742999999999997	2.7634	0.0351213	8.19858e-4	0.137535	0.026165
chr6	33396936	33397034	2846989	0	+	0.459184	(0.44,0.476]	chr6	268647	46	INTRON	INTRON	KIFC1	ENSG00000237649.8	ENST00000428849.7:ENST00000450504.1	protein_coding	protein_coding	protein_coding	protein_coding	4	48	2	2.13779	2.17429	2.21079	0.0264596	0.0194581	0.122506	0.119831
chr6	18260975	18261074	3069215	0	-	0.444444	(0.44,0.476]	chr6	285214	22	INTRON	INTRON	DEK	ENSG00000124795.17	ENST00000652689.1:ENST00000651624.1:ENST00000515770.2:ENST00000651992.1:ENST00000507591.2:ENST00000505224.5:ENST00000244776.11:ENST00000652576.1:ENST00000503715.5:ENST00000515742.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	117	2	1.60118	2.174255	2.74733	0.0107718	9.96884e-4	0.0920575	0.0288906
chr3	183746176	183746276	1580780	0	+	0.49	(0.476,0.515]	chr3	163062	90	INTRON	INTRON	YEATS2	ENSG00000163872.16	ENST00000305135.10	protein_coding	protein_coding	protein_coding	protein_coding	6	69	2	1.97402	2.1742500000000002	2.37448	0.0206778	0.00419067	0.110999	0.0591344
chr6	26120421	26120521	3070828	0	-	0.34	(0.32,0.35]	chr6	285403	49	INTRON	INTRON	H2BC4	ENSG00000180596.8	ENST00000314332.5	protein_coding	protein_coding	protein_coding	protein_coding	14	182	2	1.90648	2.174245	2.44201	0.00548799	5.20021e-4	0.0648867	0.0204523
chr20	3932472	3932572	7308568	0	-	0.45	(0.44,0.476]	chr20	744262	53	UTR3	UTR3:EXON_MRNA	RNF24	ENSG00000101236.17	ENST00000336095.10:ENST00000358395.11:ENST00000432261.6	protein_coding	protein_coding	protein_coding	protein_coding	6	67	2	1.79873	2.174085	2.54944	0.0223888	0.00591346	0.116918	0.0694038
chr7	43692508	43692608	3526008	0	-	0.43	(0.408,0.44]	chr7	328779	264	INTRON	INTRON	COA1	ENSG00000106603.20	ENST00000415076.6:ENST00000446330.6:ENST00000446564.5:ENST00000438444.5:ENST00000223336.11:ENST00000310564.10:ENST00000415798.5:ENST00000431651.5:ENST00000451651.5:ENST00000418140.5:ENST00000448704.5:ENST00000470156.1:ENST00000457939.1:ENST00000420441.1:ENST00000478504.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	71	2	2.08376	2.17408	2.2644	0.0129886	0.00768371	0.0991656	0.0753803
chr3	19956950	19957050	1376134	0	+	0.51	(0.476,0.515]	chr3	145051	37	INTRON	INTRON	RAB5A	ENSG00000144566.11	ENST00000273047.9:ENST00000412966.5:ENST00000446547.5:ENST00000422242.1:ENST00000469122.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	92	2	1.75142	2.17407	2.59672	0.0259024	6.3664e-4	0.121522	0.0228285
chr9	131157384	131157484	4215953	0	+	0.44	(0.408,0.44]	chr9	386591	51	INTRON	INTRON	NUP214	ENSG00000126883.19	ENST00000695497.1:ENST00000695498.1:ENST00000695496.1:ENST00000695495.1:ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000651022.1:ENST00000525980.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	67	2	1.69979	2.1740399999999998	2.64829	0.0310346	0.00400062	0.13151	0.057767
chr4	2495541	2495637	1912092	0	+	0.5	(0.476,0.515]	chr4	191933	4	INTRON	INTRON	RNF4	ENSG00000063978.16	ENST00000503659.5:ENST00000504224.5:ENST00000541204.5:ENST00000502316.5:ENST00000509388.5:ENST00000507247.5:ENST00000314289.13:ENST00000511843.5:ENST00000509258.5:ENST00000513284.5:ENST00000507784.5:ENST00000513578.5:ENST00000511859.5:ENST00000511892.5:ENST00000513643.5:ENST00000503123.5:ENST00000509206.1:ENST00000506706.5:ENST00000511600.5:ENST00000513450.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	79	2	1.78917	2.174005	2.55884	0.022887	0.00186081	0.118056	0.039946
chr12	54237984	54238083	5330468	0	-	0.474747	(0.44,0.476]	chr12	508602	72	UTR3	UTR3:EXON_MRNA	CBX5	ENSG00000094916.16	ENST00000209875.9	protein_coding	protein_coding	protein_coding	protein_coding	26	284	2	2.0294	2.17385	2.3183	8.44289e-4	1.23779e-4	0.0267232	0.00952291
chr6	147952436	147952534	2993525	0	+	0.285714	(0.28,0.32]	chr6	280183	46	INTRON	INTRON	ENSG00000227681	ENSG00000227681.5	ENST00000427015.1	lncRNA	lncRNA	lncRNA	lncRNA	4	61	2	2.00989	2.1738	2.33771	0.0427801	0.0142701	0.148082	0.103838
chr1	503055	503155	355591	0	-	0.44	(0.408,0.44]	chr1	41003	1	SS3_PROX	SS3_PROX:INTRON	ENSG00000237094	ENSG00000237094.12	ENST00000641303.1:ENST00000641063.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	12	137	2	2.11596	2.1737849999999996	2.23161	0.00216527	0.00206564	0.04217	0.0417866
chr4	24540007	24540107	2118555	0	-	0.32	(0.28,0.32]	chr4	209204	4	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	DHX15	ENSG00000109606.13	ENST00000336812.5:ENST00000503562.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	14	147	2	1.45042	2.17375	2.89708	0.0162084	0.00257346	0.109464	0.0451443
chr19	11113077	11113177	7017065	0	+	0.59	(0.57,1]	chr19	697465	4	SS3_PROX	SS3_PROX:INTRON	LDLR	ENSG00000130164.14	ENST00000557933.5:ENST00000558518.6:ENST00000545707.5:ENST00000535915.5:ENST00000455727.6:ENST00000558013.5:ENST00000252444.9:ENST00000560467.1:ENST00000560173.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	18	104	2	1.70725	2.173705	2.64016	0.00454565	2.18063e-5	0.0619468	0.00381314
chr5	139625257	139625357	2501152	0	+	0.41	(0.408,0.44]	chr5	239054	14	INTRON	INTRON	UBE2D2	ENSG00000131508.16	ENST00000511725.5:ENST00000398733.8:ENST00000398734.8:ENST00000505548.5:ENST00000253815.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	49	2	2.07919	2.1735550000000003	2.26792	0.0291499	0.0179973	0.14147	0.106756
chr11	65439149	65439249	4805934	0	+	0.45	(0.44,0.476]	chr11	446554	165	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	56	580	2	1.91817	2.173435	2.4287	2.25812e-4	4.22347e-5	0.0132783	0.00552034
chr7	127353090	127353190	3633844	0	-	0.27	[0,0.28]	chr7	337747	29	INTRON	INTRON	ZNF800	ENSG00000048405.11	ENST00000485577.1	protein_coding	processed_transcript	protein_coding	processed_transcript	5	85	2	1.55741	2.17341	2.78941	0.0792968	0.00320409	0.199711	0.0521823
chr2	197494331	197494412	1307115	0	-	0.45679	(0.44,0.476]	chr2	136796	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HSPD1	ENSG00000144381.18	ENST00000388968.8:ENST00000426480.2:ENST00000345042.6:ENST00000452200.6:ENST00000679291.1:ENST00000677403.1:ENST00000678621.1:ENST00000678545.1:ENST00000676933.1:ENST00000678170.1:ENST00000476746.6:ENST00000678969.1:ENST00000428204.6:ENST00000418022.2:ENST00000439605.2:ENST00000440114.2:ENST00000461097.2:ENST00000677792.1:ENST00000678761.1:ENST00000677913.1:ENST00000677454.1:ENST00000486181.5:ENST00000430176.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	58	2	1.87325	2.1733200000000004	2.47339	0.0265709	0.0090196	0.134088	0.080367
chr8	11860012	11860110	3908777	0	-	0.459184	(0.44,0.476]	chr8	358204	17	INTRON	INTRON	CTSB	ENSG00000164733.22	ENST00000677671.1:ENST00000678092.1:ENST00000679128.1:ENST00000677873.1:ENST00000676691.1:ENST00000678598.1:ENST00000353047.11:ENST00000677650.1:ENST00000526481.7:ENST00000676825.1:ENST00000678242.1:ENST00000677366.1:ENST00000677544.1:ENST00000530640.7:ENST00000677418.1:ENST00000677047.1:ENST00000676502.1:ENST00000531089.6:ENST00000678629.1:ENST00000678145.1:ENST00000678929.1:ENST00000677819.1:ENST00000677415.1:ENST00000678357.1:ENST00000676755.1:ENST00000679051.1:ENST00000453527.7:ENST00000678067.1:ENST00000679140.1:ENST00000677082.1:ENST00000533455.6:ENST00000531551.5:ENST00000534382.6:ENST00000679214.1:ENST00000531502.6:ENST00000534510.6:ENST00000677865.1:ENST00000533572.6:ENST00000345125.8:ENST00000526645.6:ENST00000534149.6:ENST00000505496.7:ENST00000532392.2:ENST00000676843.1:ENST00000524500.6:ENST00000525076.6:ENST00000527215.7:ENST00000528965.2:ENST00000532656.7:ENST00000526195.6:ENST00000678615.1:ENST00000527243.6:ENST00000530296.6:ENST00000534636.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	58	2	1.87325	2.1733200000000004	2.47339	0.0265709	0.0090196	0.134088	0.080367
chr1	193062897	193062996	284294	0	+	0.343434	(0.32,0.35]	chr1	32673	23	INTRON	INTRON	RO60	ENSG00000116747.13	ENST00000432079.5:ENST00000400968.7:ENST00000415442.2:ENST00000460715.2:ENST00000506303.1:ENST00000367446.7:ENST00000367443.5:ENST00000367444.7:ENST00000367445.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	105	2	1.92312	2.17332	2.42352	0.0122807	0.00462032	0.091087	0.062717
chr22	21444421	21444521	7481446	0	+	0.49	(0.476,0.515]	chr22	763216	1	SS3_PROX	SS3_PROX:INTRON	HIC2	ENSG00000169635.10	ENST00000407464.7:ENST00000407598.2:ENST00000443632.2	protein_coding	protein_coding	protein_coding	protein_coding	7	62	2	1.27239	2.173305	3.07422	0.0651036	0.00506023	0.179712	0.0646039
chr18	36140287	36140374	6891529	0	+	0.298851	(0.28,0.32]	chr18	682987	3	INTRON	INTRON	ELP2	ENSG00000134759.14	ENST00000543127.5:ENST00000544267.5:ENST00000351393.10:ENST00000545632.5:ENST00000442325.6:ENST00000358232.11:ENST00000423854.6:ENST00000539560.5:ENST00000542430.5:ENST00000350494.10:ENST00000542824.5:ENST00000540799.1:ENST00000543439.5:ENST00000540730.5:ENST00000540323.5:ENST00000536373.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	39	530	2	2.14346	2.17328	2.2031	7.25584e-4	1.78445e-4	0.0247646	0.0116619
chr15	78877086	78877175	6069581	0	+	0.460674	(0.44,0.476]	chr15	578188	1	INTRON	INTRON	MORF4L1	ENSG00000185787.15	ENST00000379535.8:ENST00000559697.5:ENST00000331268.9:ENST00000557961.5:ENST00000559930.5:ENST00000426013.7:ENST00000558746.5:ENST00000558893.5:ENST00000558830.5:ENST00000558522.5:ENST00000559619.5:ENST00000559345.5:ENST00000561171.5:ENST00000558502.5:ENST00000559258.5:ENST00000559690.5:ENST00000559158.5:ENST00000560422.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	10	110	2	2.1123	2.173275	2.23425	0.00441123	0.0023263	0.0587529	0.0442989
chr15	63750881	63750980	6200063	0	-	0.383838	(0.378,0.408]	chr15	591393	7	INTRON	INTRON	HERC1	ENSG00000103657.14	ENST00000443617.7:ENST00000561400.1	protein_coding	protein_coding	protein_coding	protein_coding	17	195	2	1.9381	2.173185	2.40827	0.00323256	2.24268e-4	0.0507196	0.0131939
chr16	22507997	22508096	6322689	0	+	0.30303	(0.28,0.32]	chr16	605452	2	INTRON	INTRON	NPIPB5	ENSG00000243716.11	ENST00000415654.5:ENST00000415833.6:ENST00000546168.5:ENST00000543407.5:ENST00000356156.7:ENST00000541154.5:ENST00000545375.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	10	142	2	1.63719	2.173035	2.70888	0.0251301	4.99158e-4	0.12011	0.020217099999999998
chr16	89407755	89407854	6542766	0	-	0.606061	(0.57,1]	chr16	634254	36	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000647238.1:ENST00000644045.1:ENST00000643147.1:ENST00000644139.1:ENST00000568512.6:ENST00000566973.1:ENST00000562211.2:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	39	2	1.2666	2.17299	3.07938	0.0788045	4.22401e-4	0.198736	0.0183838
chr2	26064273	26064373	713401	0	+	0.33	(0.32,0.35]	chr2	82440	216	INTRON	INTRON	RAB10	ENSG00000084733.11	ENST00000264710.5:ENST00000495146.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	113	2	1.88021	2.1729849999999997	2.46576	0.00751788	0.00423072	0.0773151	0.0572185
chr9	137258251	137258351	4223133	0	+	0.53	(0.515,0.57]	chr9	388057	8	INTRON	INTRON	NELFB	ENSG00000188986.9	ENST00000343053.6	protein_coding	protein_coding	protein_coding	protein_coding	4	41	2	2.01737	2.172865	2.32836	0.0352218	0.0126662	0.137535	0.0982897
chr3	196074749	196074841	1897482	0	-	0.586957	(0.57,1]	chr3	189978	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TFRC	ENSG00000072274.13	ENST00000420415.5:ENST00000360110.9:ENST00000392396.7:ENST00000421258.1:ENST00000464011.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	11	61	2	1.95011	2.172835	2.39556	0.00297177	0.00141347	0.0501309	0.0340865
chr9	123222876	123222976	4340023	0	-	0.33	(0.32,0.35]	chr9	398957	91	INTRON	INTRON	STRBP	ENSG00000165209.19	ENST00000348403.10:ENST00000360998.3:ENST00000407982.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	78	2	2.12121	2.1727499999999997	2.22429	0.0226421	0.00650424	0.117557	0.0735144
chr4	78872422	78872517	1982365	0	+	0.284211	(0.28,0.32]	chr4	198542	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	BMP2K	ENSG00000138756.19	ENST00000389010.7:ENST00000502613.3:ENST00000502871.5:ENST00000507670.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	62	2	1.51776	2.172725	2.82769	0.0528371	0.0169391	0.178899	0.103888
chr6	4062898	4062998	2790131	0	+	0.31	(0.28,0.32]	chr6	263563	24	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PRPF4B	ENSG00000112739.17	ENST00000480058.5:ENST00000337659.11:ENST00000481109.5:ENST00000463634.6:ENST00000494674.1:ENST00000461612.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	62	2	1.51776	2.172725	2.82769	0.0528371	0.0169391	0.178899	0.103888
chr7	152279238	152279337	3679714	0	-	0.292929	(0.28,0.32]	chr7	341617	50	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000684262.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	62	2	1.51776	2.172725	2.82769	0.0528371	0.0169391	0.178899	0.103888
chr1	75788283	75788381	144635	0	+	0.469388	(0.44,0.476]	chr1	16320	8	EXON_LNCRNA	EXON_LNCRNA:INTRON	RABGGTB	ENSG00000137955.16	ENST00000496055.5:ENST00000485459.5:ENST00000473406.5:ENST00000370826.3:ENST00000497648.1:ENST00000319942.8:ENST00000462042.5:ENST00000470201.5:ENST00000471759.5:ENST00000491266.5:ENST00000461653.5:ENST00000489450.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	43	485	2	1.72511	2.1727049999999997	2.6203	0.00127371	1.32251e-5	0.0331655	0.00287735
chr3	47889723	47889823	1685490	0	-	0.5	(0.476,0.515]	chr3	172195	118	INTRON	INTRON	MAP4	ENSG00000047849.22	ENST00000429422.5:ENST00000683076.1:ENST00000395734.7:ENST00000426837.6:ENST00000360240.10:ENST00000420772.6:ENST00000335271.9:ENST00000383736.3:ENST00000497735.1:ENST00000482752.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	43	2	1.86014	2.1727049999999997	2.48527	0.03496	0.0277606	0.13747500000000001	0.137011
chr17	7575658	7575745	6553823	0	+	0.448276	(0.44,0.476]	chr17	636716	1	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	EIF4A1	ENSG00000161960.16	ENST00000293831.13:ENST00000396527.7:ENST00000578495.5:ENST00000578754.5:ENST00000582169.5:ENST00000578476.5:ENST00000584712.5:ENST00000581544.5:ENST00000584901.5:ENST00000583802.5:ENST00000585024.5:ENST00000582848.5:ENST00000583899.5:ENST00000577269.5:ENST00000584784.5:ENST00000582746.5:ENST00000584860.5:ENST00000581384.5:ENST00000578324.5:ENST00000584798.1:ENST00000577731.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	134	2	2.02086	2.172685	2.32451	0.00250949	0.00241361	0.0453973	0.0446195
chr22	22487273	22487372	7562058	0	-	0.464646	(0.44,0.476]	chr22	773556	30	UTR3	UTR3:EXON_MRNA	ZNF280B	ENSG00000275004.4	ENST00000626650.3:ENST00000619852.2:ENST00000613655.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	84	2	2.03266	2.17265	2.31264	0.0155853	0.00316873	0.109411	0.0503085
chr6	34357569	34357669	3084423	0	-	0.41	(0.408,0.44]	chr6	288633	152	INTRON	INTRON	NUDT3:RPS10-NUDT3	ENSG00000272325.2:ENSG00000270800.3	ENST00000607016.2:ENST00000639725.1:ENST00000639877.1:ENST00000605528.2	protein_coding	protein_coding	protein_coding	protein_coding	5	58	2	2.16746	2.17265	2.17784	0.024436	0.00916282	0.12011	0.0855292
chr7	26203815	26203912	3292384	0	+	0.329897	(0.32,0.35]	chr7	305843	4	INTRON	INTRON	CBX3	ENSG00000122565.19	ENST00000337620.8:ENST00000396386.7:ENST00000456948.5:ENST00000409747.5:ENST00000497498.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	43	2	1.94202	2.17255	2.40308	0.0486128	0.0417732	0.161736	0.153946
chr21	43746722	43746820	7413442	0	+	0.244898	[0,0.28]	chr21	755561	2	SS3_PROX	SS3_PROX:INTRON	PDXK	ENSG00000160209.19	ENST00000468090.5:ENST00000291565.9:ENST00000398085.7:ENST00000498040.5:ENST00000472777.5:ENST00000481512.5:ENST00000490666.5:ENST00000467908.1:ENST00000343528.10:ENST00000398078.7:ENST00000468392.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	123	2	1.69895	2.17253	2.64611	0.0568939	8.7193e-4	0.167723	0.0268378
chr1	45521010	45521108	439739	0	-	0.346939	(0.32,0.35]	chr1	53271	16	INTRON	INTRON	PRDX1	ENSG00000117450.15	ENST00000676549.1:ENST00000424390.2:ENST00000447184.6:ENST00000262746.5:ENST00000319248.13:ENST00000372079.1	protein_coding	protein_coding	protein_coding	protein_coding	4	59	2	1.88468	2.172475	2.46027	0.0515071	0.0108973	0.176696	0.0873034
chr15	75438331	75438430	6223939	0	-	0.434343	(0.408,0.44]	chr15	594518	15	INTRON	INTRON	SIN3A	ENSG00000169375.16	ENST00000394947.8:ENST00000360439.8:ENST00000394949.8:ENST00000564778.5:ENST00000562776.5:ENST00000568431.5:ENST00000567289.5:ENST00000570115.5:ENST00000568309.5:ENST00000568190.1:ENST00000568919.1:ENST00000565264.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	58	2	1.9831	2.172475	2.36185	0.018491	0.0133164	0.116694	0.094512
chr2	111841011	111841111	1214432	0	-	0.41	(0.408,0.44]	chr2	129148	21	INTRON	INTRON	ANAPC1	ENSG00000153107.13	ENST00000427997.5:ENST00000341068.8	protein_coding	protein_coding	protein_coding	protein_coding	5	58	2	1.9831	2.172475	2.36185	0.018491	0.0133164	0.116694	0.094512
chr10	47539993	47540076	4609344	0	-	0.289157	(0.28,0.32]	chr10	424645	5	INTRON	INTRON	ENSG00000254929:BMS1P2	ENSG00000254929.6:ENSG00000251079.6	ENST00000605970.5:ENST00000431840.2:ENST00000532854.5	lncRNA	lncRNA	lncRNA:transcribed_unprocessed_pseudogene	lncRNA:processed_transcript	3	47	2	1.96376	2.172385	2.38101	0.0480066	0.0456017	0.164236	0.153019
chr3	9988271	9988371	1361979	0	+	0.37	(0.35,0.378]	chr3	143383	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	EMC3-AS1	ENSG00000180385.9	ENST00000692142.1:ENST00000366264.6:ENST00000693066.1:ENST00000326237.3:ENST00000440568.1:ENST00000438698.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	7	87	2	2.04967	2.172245	2.29482	0.00827328	0.00743782	0.0813266	0.0746192
chr11	666667	666767	4889190	0	-	0.49	(0.476,0.515]	chr11	457709	65	INTRON	INTRON	DEAF1	ENSG00000177030.19	ENST00000382409.4:ENST00000527170.5:ENST00000685854.1:ENST00000683307.1:ENST00000528864.6:ENST00000525626.6:ENST00000682936.1:ENST00000690068.1:ENST00000692634.1:ENST00000687329.1:ENST00000686001.1:ENST00000689835.1:ENST00000525904.5:ENST00000530813.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	79	2	1.75142	2.17223	2.59304	0.0259024	0.00158794	0.121522	0.0367961
chr2	241684015	241684115	1349411	0	-	0.38	(0.378,0.408]	chr2	141811	7	INTRON	INTRON	DTYMK	ENSG00000168393.13	ENST00000400770.6:ENST00000305784.7:ENST00000445261.5:ENST00000432348.5:ENST00000420144.1:ENST00000493095.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	13	150	2	1.85844	2.17213	2.48582	0.00712194	3.3417e-4	0.0723634	0.0162699
chr16	89486340	89486440	6543560	0	-	0.62	(0.57,1]	chr16	634281	547	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	23	2	1.67986	2.17212	2.66438	0.0496395	0.0171563	0.174685	0.104099
chr22	19119630	19119730	7551987	0	-	0.58	(0.57,1]	chr22	771903	298	INTRON	INTRON	DGCR2	ENSG00000070413.20	ENST00000537045.5:ENST00000545799.5:ENST00000263196.12:ENST00000389262.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	23	2	1.67986	2.17212	2.66438	0.0496395	0.0171563	0.174685	0.104099
chr10	74183879	74183979	4456095	0	+	0.41	(0.408,0.44]	chr10	411534	66	INTRON	INTRON	ADK	ENSG00000156110.15	ENST00000672429.1:ENST00000539909.6:ENST00000286621.7:ENST00000478611.2:ENST00000673352.1:ENST00000673310.1:ENST00000672920.1:ENST00000672394.1:ENST00000372734.5:ENST00000673027.1:ENST00000541550.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	43	2	1.75791	2.172075	2.58624	0.0378795	0.0273686	0.157034	0.123904
chr3	47664783	47664883	1683880	0	-	0.42	(0.408,0.44]	chr3	172008	18	INTRON	INTRON	SMARCC1	ENSG00000173473.11	ENST00000254480.10:ENST00000425518.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	43	2	1.75791	2.172075	2.58624	0.0378795	0.0273686	0.157034	0.123904
chr2	161334342	161334442	901371	0	+	0.35	(0.32,0.35]	chr2	99704	151	INTRON	INTRON	PSMD14	ENSG00000115233.12	ENST00000409682.8:ENST00000437630.1	protein_coding	protein_coding	protein_coding	protein_coding	4	50	2	1.83315	2.17188	2.51061	0.0364463	0.0313348	0.144381	0.138959
chr6	37464594	37464693	2856828	0	+	0.323232	(0.32,0.35]	chr6	270152	12	INTRON	INTRON	CMTR1	ENSG00000137200.13	ENST00000373451.9	protein_coding	protein_coding	protein_coding	protein_coding	4	50	2	1.83315	2.17188	2.51061	0.0364463	0.0313348	0.144381	0.138959
chr18	9517922	9518021	6871560	0	+	0.414141	(0.408,0.44]	chr18	680729	7	UTR3	UTR3:EXON_MRNA:INTRON	RALBP1	ENSG00000017797.13	ENST00000019317.8:ENST00000383432.8:ENST00000609094.2	protein_coding	protein_coding	protein_coding	protein_coding	7	74	2	1.8937	2.171865	2.45003	0.00990006	0.00928733	0.0855292	0.0838372
chr10	49962168	49962267	4432833	0	+	0.383838	(0.378,0.408]	chr10	408699	33	INTRON	INTRON	TIMM23B:TIMM23B-AGAP6	ENSG00000204152.14:ENSG00000178440.8	ENST00000478381.5:ENST00000651259.3:ENST00000651763.1:ENST00000651208.1:ENST00000652716.1:ENST00000483296.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	18	205	2	2.10297	2.1718599999999997	2.24075	0.00186664	3.34947e-4	0.0390476	0.0162819
chr6	110895394	110895493	2939161	0	+	0.292929	(0.28,0.32]	chr6	276798	15	UTR3	UTR3:EXON_MRNA	AMD1	ENSG00000123505.19	ENST00000451850.6:ENST00000675380.1:ENST00000368882.8:ENST00000672937.2:ENST00000368885.8:ENST00000368876.2:ENST00000612642.4:ENST00000619590.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	113	2	2.03307	2.17181	2.31055	0.00834688	0.0062039	0.0774402	0.0716199
chr19	1412563	1412662	6995144	0	+	0.656566	(0.57,1]	chr19	693171	21	INTRON	INTRON	DAZAP1	ENSG00000071626.17	ENST00000336761.10:ENST00000233078.9:ENST00000592522.5:ENST00000586579.5:ENST00000587079.5:ENST00000592453.2:ENST00000590419.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	26	2	1.77365	2.171805	2.56996	0.0670385	0.00499145	0.183051	0.0646039
chr4	39323020	39323111	2128832	0	-	0.373626	(0.35,0.378]	chr4	209853	3	SS5_PROX	SS5_PROX:INTRON	RFC1	ENSG00000035928.17	ENST00000381897.5:ENST00000349703.7:ENST00000418436.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	63	2	2.14264	2.1718	2.20096	0.0274795	0.0087123	0.123904	0.0844834
chr11	65443143	65443243	4805974	0	+	0.54	(0.515,0.57]	chr11	446554	205	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	56	468	2	1.84563	2.171725	2.49782	2.26314e-4	2.06283e-5	0.0132935	0.00369632
chr22	21982462	21982549	7562025	0	-	0.597701	(0.57,1]	chr22	773555	4	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TOP3B	ENSG00000100038.20	ENST00000357179.10:ENST00000457179.5:ENST00000444502.5:ENST00000398793.6:ENST00000424393.5:ENST00000437929.5:ENST00000430142.5:ENST00000456075.5:ENST00000449704.5:ENST00000437103.1:ENST00000434517.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	71	2	1.17344	2.17169	3.16994	0.0618602	1.01327e-5	0.193604	0.00247779
chr1	100007930	100008027	171288	0	+	0.340206	(0.32,0.35]	chr1	18548	9	EXON_MRNA	EXON_MRNA:INTRON	SLC35A3:ENSG00000283761	ENSG00000117620.15:ENSG00000283761.1	ENST00000638371.1:ENST00000427993.7:ENST00000533028.8:ENST00000639221.1:ENST00000639807.1:ENST00000638336.1:ENST00000638792.1:ENST00000638968.1:ENST00000465289.6:ENST00000640715.1:ENST00000640726.1:ENST00000639040.1:ENST00000639037.1:ENST00000639994.1:ENST00000640360.1:ENST00000640178.1:ENST00000638988.1:ENST00000640732.1:ENST00000638779.1:ENST00000638929.1:ENST00000639088.1:ENST00000640600.1:ENST00000638338.1:ENST00000639171.1:ENST00000638876.1:ENST00000640238.1:ENST00000370155.9:ENST00000640357.1:ENST00000370153.6:ENST00000422078.1:ENST00000639148.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	68	2	1.8903	2.17168	2.45306	0.0298043	0.00916394	0.129138	0.0855292
chr10	49973758	49973857	4432952	0	+	0.353535	(0.35,0.378]	chr10	408709	8	UTR3	UTR3:EXON_MRNA:INTRON	TIMM23B:TIMM23B-AGAP6	ENSG00000204152.14:ENSG00000178440.8	ENST00000478381.5:ENST00000651259.3:ENST00000651763.1:ENST00000651208.1:ENST00000429104.1:ENST00000444438.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	112	2	2.0645	2.1715799999999996	2.27866	0.00612402	0.00316333	0.0676501	0.0516574
chr20	38952617	38952715	7272688	0	+	0.316327	(0.28,0.32]	chr20	739071	2	UTR3	UTR3:EXON_MRNA	FAM83D	ENSG00000101447.15	ENST00000619304.4:ENST00000619850.2	protein_coding	protein_coding	protein_coding	protein_coding	4	54	2	1.6633	2.171525	2.67975	0.0522231	0.0252505	0.177274	0.12011
chr5	150754933	150755030	2751862	0	-	0.391753	(0.378,0.408]	chr5	259276	9	INTRON	INTRON	DCTN4	ENSG00000132912.13	ENST00000447998.7:ENST00000424236.5:ENST00000446090.6:ENST00000627368.2:ENST00000519313.5:ENST00000518015.5:ENST00000521448.5:ENST00000521533.1:ENST00000521093.1:ENST00000517421.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	107	2	1.92269	2.171475	2.42026	0.00836891	0.00213386	0.0822143	0.041773
chr14	63491642	63491742	5907387	0	-	0.52	(0.515,0.57]	chr14	561132	374	INTRON	INTRON	PPP2R5E	ENSG00000154001.14	ENST00000337537.8:ENST00000422769.6:ENST00000555899.1:ENST00000556484.5:ENST00000553266.5:ENST00000556878.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	69	2	1.80447	2.17146	2.53845	0.00879341	0.00632226	0.084878	0.0687526
chr16	10418683	10418782	6286605	0	+	0.333333	(0.32,0.35]	chr16	601967	37	INTRON	INTRON	ATF7IP2	ENSG00000166669.14	ENST00000564797.5:ENST00000396559.5:ENST00000396560.6:ENST00000562527.5:ENST00000561932.5:ENST00000543967.5:ENST00000562102.6:ENST00000535850.5:ENST00000569900.5:ENST00000569939.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	94	2	1.95408	2.17145	2.38882	0.0124054	0.00566663	0.0973643	0.0653997
chr8	37873379	37873479	3935681	0	-	0.49	(0.476,0.515]	chr8	360562	2	SS3_PROX	SS3_PROX:INTRON	RAB11FIP1	ENSG00000156675.16	ENST00000330843.9:ENST00000287263.8:ENST00000522727.5:ENST00000524118.1	protein_coding	protein_coding	protein_coding	protein_coding	7	73	2	1.84346	2.1714350000000002	2.49941	0.0114152	0.00811651	0.095586	0.0766625
chr7	128612868	128612968	3408178	0	+	0.45	(0.44,0.476]	chr7	318376	29	INTRON	INTRON	ENSG00000280828:ENSG00000242588	ENSG00000280828.1:ENSG00000242588.6	ENST00000479267.2:ENST00000605862.5	lncRNA	lncRNA	lncRNA:unprocessed_pseudogene	lncRNA:unprocessed_pseudogene	6	68	2	2.08277	2.171345	2.25992	0.0309998	0.00324123	0.13151	0.0524329
chr8	37878615	37878715	3935736	0	-	0.31	(0.28,0.32]	chr8	360576	6	INTRON	INTRON	RAB11FIP1	ENSG00000156675.16	ENST00000330843.9:ENST00000287263.8:ENST00000522727.5	protein_coding	protein_coding	protein_coding	protein_coding	8	113	2	1.9822	2.171345	2.36049	0.00761984	0.00700135	0.0776647	0.0718189
chr2	222885841	222885941	1021460	0	+	0.47	(0.44,0.476]	chr2	109256	44	INTRON	INTRON	ACSL3	ENSG00000123983.15	ENST00000392066.7:ENST00000407441.5:ENST00000680251.1:ENST00000679541.1:ENST00000681906.1:ENST00000679545.1:ENST00000679932.1:ENST00000680100.1:ENST00000680475.1:ENST00000680525.1:ENST00000680420.1:ENST00000681326.1:ENST00000681292.1:ENST00000681017.1:ENST00000680382.1:ENST00000535678.2:ENST00000680395.1:ENST00000680736.1:ENST00000679546.1:ENST00000680147.1:ENST00000357430.8:ENST00000681009.1:ENST00000679514.1:ENST00000681697.1:ENST00000680921.1:ENST00000681383.1:ENST00000413316.1:ENST00000679558.1:ENST00000680684.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	66	2	1.5191	2.1713050000000003	2.82351	0.0526241	0.00191049	0.160983	0.0403772
chr3	33086025	33086125	1651055	0	-	0.41	(0.408,0.44]	chr3	169303	84	INTRON	INTRON	GLB1	ENSG00000170266.16	ENST00000399402.7:ENST00000307363.10:ENST00000307377.12:ENST00000482097.5:ENST00000485698.5:ENST00000498537.5:ENST00000415454.1:ENST00000438227.1:ENST00000440656.1:ENST00000464355.1:ENST00000450835.1:ENST00000436768.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	11	127	2	2.11768	2.171245	2.22481	0.00352982	0.00182717	0.0546236	0.0386611
chr9	111668868	111668968	4184436	0	+	0.53	(0.515,0.57]	chr9	381677	2	SS3_PROX	SS3_PROX:INTRON	DNAJC25-GNG10:GNG10	ENSG00000244115.1:ENSG00000242616.4	ENST00000374294.3:ENST00000374293.5	protein_coding	protein_coding	protein_coding	protein_coding	4	37	2	1.81744	2.17124	2.52504	0.031028	0.029342	0.143457	0.128055
chr1	173887119	173887219	256937	0	+	0.31	(0.28,0.32]	chr1	30716	11	UTR3	UTR3:EXON_MRNA	ZBTB37	ENSG00000185278.16	ENST00000367701.10:ENST00000695459.1	protein_coding	protein_coding	protein_coding	protein_coding	3	45	2	2.08149	2.171195	2.2609	0.0671429	0.031124	0.183051	0.143644
chr5	33456956	33457056	2335296	0	+	0.47	(0.44,0.476]	chr5	225456	3	SS3_PROX	SS3_PROX:INTRON	TARS1	ENSG00000113407.14	ENST00000502553.5:ENST00000508361.5:ENST00000265112.8:ENST00000455217.6:ENST00000507716.5:ENST00000509731.5:ENST00000504698.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	49	2	1.60176	2.171195	2.74063	0.0389597	0.0176095	0.160861	0.105143
chr9	111901211	111901311	4184495	0	+	0.29	(0.28,0.32]	chr9	381684	35	INTRON	INTRON	UGCG	ENSG00000148154.10	ENST00000374279.4:ENST00000489355.1:ENST00000495085.1:ENST00000490110.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	45	2	2.08149	2.171195	2.2609	0.0671429	0.031124	0.183051	0.143644
chr6	158569522	158569622	3021693	0	+	0.43	(0.408,0.44]	chr6	281792	89	INTRON	INTRON	TMEM181	ENSG00000146433.10	ENST00000367090.4:ENST00000684151.1	protein_coding	protein_coding	protein_coding	protein_coding	14	156	2	1.95595	2.171125	2.3863	0.00448131	3.57398e-4	0.0593175	0.0169202
chr3	141894243	141894343	1526251	0	+	0.22	[0,0.28]	chr3	159005	163	INTRON	INTRON	ATP1B3	ENSG00000069849.11	ENST00000475483.5:ENST00000465172.5:ENST00000286371.8:ENST00000466678.5:ENST00000462082.1:ENST00000495216.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	135	2	1.4594	2.17105	2.8827	0.028334	0.00341901	0.138023	0.0517761
chr12	93400574	93400674	5189173	0	+	0.42	(0.408,0.44]	chr12	490816	13	UTR3	UTR3:EXON_MRNA	NUDT4	ENSG00000173598.14	ENST00000337179.9:ENST00000415493.7:ENST00000549992.5	protein_coding	protein_coding	protein_coding	protein_coding	39	427	2	1.90045	2.171035	2.44162	0.00110044	1.55342e-5	0.0304914	0.00296935
chr16	4876470	4876570	6283603	0	+	0.33	(0.32,0.35]	chr16	601610	2	SS3_PROX	SS3_PROX:INTRON	UBN1	ENSG00000118900.15	ENST00000262376.11:ENST00000590769.5:ENST00000396658.8:ENST00000589191.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	56	2	2.09005	2.17089	2.25173	0.0330483	0.0180122	0.133816	0.114436
chr6	78957676	78957776	3140837	0	-	0.33	(0.32,0.35]	chr6	292736	21	EXON_LNCRNA	EXON_LNCRNA:INTRON	PHIP	ENSG00000146247.14	ENST00000275034.5:ENST00000479165.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	56	2	2.09005	2.17089	2.25173	0.0330483	0.0180122	0.133816	0.114436
chr1	229477396	229477496	653010	0	-	0.34	(0.32,0.35]	chr1	77340	4	SS5_PROX	SS5_PROX:INTRON	NUP133	ENSG00000069248.12	ENST00000261396.6	protein_coding	protein_coding	protein_coding	protein_coding	6	77	2	1.9182	2.17086	2.42352	0.0141462	0.0122807	0.103512	0.091087
chr19	1475514	1475611	7112136	0	-	0.484536	(0.476,0.515]	chr19	714475	1	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	C19orf25	ENSG00000119559.17	ENST00000588427.5:ENST00000585675.6:ENST00000436106.3:ENST00000588871.5:ENST00000427685.2:ENST00000586564.5:ENST00000592486.1:ENST00000592872.5:ENST00000651077.1:ENST00000588849.1:ENST00000590621.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	68	2	1.96437	2.17084	2.37731	0.0124351	0.0111793	0.0937192	0.0920366
chr11	86258792	86258892	4842140	0	+	0.41	(0.408,0.44]	chr11	451765	8	INTRON	INTRON	EED	ENSG00000074266.22	ENST00000263360.11:ENST00000528180.5:ENST00000672825.1:ENST00000673233.2:ENST00000327320.8:ENST00000351625.10:ENST00000534595.1:ENST00000525244.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	58	2	1.74108	2.17078	2.60048	0.0424099	0.00484324	0.148082	0.0640618
chr2	167858315	167858415	1258383	0	-	0.29	(0.28,0.32]	chr2	133322	427	INTRON	INTRON	B3GALT1-AS1	ENSG00000235335.3	ENST00000430546.2:ENST00000657553.1:ENST00000670221.1:ENST00000436982.2	lncRNA	lncRNA	lncRNA	lncRNA	6	85	2	1.68411	2.17072	2.65733	0.0323543	0.0061571	0.145026	0.0676501
chr18	9918914	9919014	6873390	0	+	0.58	(0.57,1]	chr18	680866	27	INTRON	INTRON	VAPA	ENSG00000101558.14	ENST00000400000.7:ENST00000577901.5:ENST00000340541.4:ENST00000585042.5:ENST00000578314.1:ENST00000584796.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	50	2	1.62753	2.1707199999999998	2.71391	0.0184812	6.82348e-4	0.116694	0.0239168
chr6	158568923	158569023	3021687	0	+	0.42	(0.408,0.44]	chr6	281792	83	INTRON	INTRON	TMEM181	ENSG00000146433.10	ENST00000367090.4:ENST00000684151.1	protein_coding	protein_coding	protein_coding	protein_coding	18	194	2	1.85465	2.17066	2.48667	0.00276014	3.18514e-4	0.0469265	0.0159645
chr10	45905685	45905784	4607992	0	-	0.363636	(0.35,0.378]	chr10	424467	49	INTRON	INTRON	PARGP1	ENSG00000239883.9	ENST00000688192.1:ENST00000686367.1:ENST00000693310.1:ENST00000417555.2:ENST00000687844.1:ENST00000687550.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	5	63	2	1.75081	2.170635	2.59046	0.0427459	0.00528327	0.148082	0.0656295
chr6	24776024	24776124	2836469	0	+	0.32	(0.28,0.32]	chr6	265890	2	SS5_PROX	SS5_PROX:INTRON	GMNN	ENSG00000112312.10	ENST00000356509.7:ENST00000230056.8:ENST00000468943.1:ENST00000620958.4:ENST00000378054.6:ENST00000476555.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	62	2	1.56118	2.17061	2.78004	0.0467152	0.0193244	0.1676	0.108861
chr16	223344	223444	6426129	0	-	0.25	[0,0.28]	chr16	617444	22	INTRON	INTRON	LUC7L	ENSG00000007392.17	ENST00000337351.8:ENST00000426094.5:ENST00000397783.5:ENST00000629543.2:ENST00000490762.5:ENST00000293872.13:ENST00000419516.5:ENST00000397780.5:ENST00000418978.5:ENST00000430864.5:ENST00000443357.5:ENST00000494366.5:ENST00000469109.1:ENST00000428363.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	51	2	1.95356	2.170565	2.38757	0.0552962	0.0463152	0.166231	0.165463
chr4	105423003	105423103	2216166	0	-	0.17	[0,0.28]	chr4	217232	167	INTRON	INTRON	PPA2	ENSG00000138777.20	ENST00000341695.10:ENST00000348706.9:ENST00000509031.5:ENST00000351450.10:ENST00000354147.7:ENST00000432483.6:ENST00000515567.5:ENST00000503171.5:ENST00000510015.5:ENST00000509426.5:ENST00000508518.5:ENST00000514209.5:ENST00000506815.5:ENST00000457404.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	51	2	1.95356	2.170565	2.38757	0.0552962	0.0463152	0.166231	0.165463
chr6	159751195	159751293	3022634	0	+	0.255102	[0,0.28]	chr6	281925	8	INTRON	INTRON	WTAP	ENSG00000146457.16	ENST00000358372.8:ENST00000650096.1:ENST00000621533.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	51	2	1.95356	2.170565	2.38757	0.0552962	0.0463152	0.166231	0.165463
chr7	150297845	150297945	3673399	0	-	0.2	[0,0.28]	chr7	340907	21	INTRON	INTRON	ACTR3C	ENSG00000106526.11	ENST00000478393.5:ENST00000683684.1:ENST00000252071.8:ENST00000477871.1:ENST00000477367.1	protein_coding	protein_coding	protein_coding	protein_coding	3	51	2	1.95356	2.170565	2.38757	0.0552962	0.0463152	0.166231	0.165463
chr15	50664945	50665044	6173064	0	-	0.252525	[0,0.28]	chr15	588397	15	INTRON	INTRON	TRPM7:ENSG00000288645	ENSG00000092439.16:ENSG00000288645.1	ENST00000646667.1:ENST00000560955.5:ENST00000676296.1	protein_coding	protein_coding	protein_coding	protein_coding	3	51	2	1.8986	2.17051	2.44242	0.0531512	0.0491024	0.179787	0.155269
chr3	149077245	149077345	1840907	0	-	0.22	[0,0.28]	chr3	185197	8	INTRON	INTRON	HLTF	ENSG00000071794.16	ENST00000310053.10:ENST00000465259.5:ENST00000392912.6:ENST00000494055.5	protein_coding	protein_coding	protein_coding	protein_coding	3	51	2	1.8986	2.17051	2.44242	0.0531512	0.0491024	0.179787	0.155269
chr1	35287543	35287643	68476	0	+	0.32	(0.28,0.32]	chr1	8717	181	INTRON	INTRON	ZMYM4	ENSG00000146463.12	ENST00000314607.11:ENST00000441447.1	protein_coding	protein_coding	protein_coding	protein_coding	4	62	2	2.08149	2.17044	2.25939	0.031124	0.021772	0.143644	0.11491
chr15	72758413	72758511	6220150	0	-	0.418367	(0.408,0.44]	chr15	593831	21	EXON_MRNA	EXON_MRNA:INTRON	ADPGK	ENSG00000159322.18	ENST00000456471.3:ENST00000311669.12:ENST00000569534.5:ENST00000567941.5:ENST00000562621.1:ENST00000563907.5:ENST00000569517.5:ENST00000567733.1:ENST00000565814.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	67	2	1.6546400000000001	2.17043	2.68622	0.0329965	0.00418848	0.145298	0.0572071
chr8	100716408	100716504	4005533	0	-	0.333333	(0.32,0.35]	chr8	366614	2	INTRON	INTRON	PABPC1	ENSG00000070756.17	ENST00000677140.1:ENST00000677787.1:ENST00000678709.1:ENST00000676662.1:ENST00000677765.1:ENST00000522720.2:ENST00000520804.2:ENST00000521865.6:ENST00000677478.1:ENST00000677380.1:ENST00000520142.2:ENST00000677775.1:ENST00000678954.1:ENST00000676655.1:ENST00000676976.1:ENST00000318607.10:ENST00000679197.1:ENST00000519100.6:ENST00000519004.5:ENST00000522387.5:ENST00000522658.6:ENST00000678822.1:ENST00000523555.6:ENST00000610907.2:ENST00000517921.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	123	2	1.56183	2.17034	2.77885	0.0202633	0.00116775	0.121406	0.0312127
chr20	6020999	6021098	7230699	0	+	0.333333	(0.32,0.35]	chr20	734840	51	INTRON	INTRON	CRLS1	ENSG00000088766.12	ENST00000452938.5:ENST00000378863.9:ENST00000378868.4:ENST00000489345.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	104	2	1.85014	2.17033	2.49052	0.0119731	0.00384313	0.0962115	0.0542786
chr15	68800346	68800446	6214771	0	-	0.35	(0.32,0.35]	chr15	593024	82	INTRON	INTRON	ANP32A	ENSG00000140350.15	ENST00000465139.6:ENST00000409628.6:ENST00000267918.9:ENST00000560303.1:ENST00000495420.5:ENST00000495764.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	86	2	1.61591	2.1703200000000002	2.72473	0.0277247	0.00433316	0.137011	0.0579683
chr6	36597744	36597836	2854449	0	+	0.26087	[0,0.28]	chr6	269778	4	INTRON	INTRON	SRSF3	ENSG00000112081.17	ENST00000613941.4:ENST00000373715.11:ENST00000339436.11:ENST00000477442.6:ENST00000620941.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	70	2	1.97426	2.170315	2.36637	0.0500615	0.0275926	0.17488	0.123904
chr2	8986495	8986595	1063397	0	-	0.47	(0.44,0.476]	chr2	113387	117	INTRON	INTRON	MBOAT2	ENSG00000143797.12	ENST00000305997.8:ENST00000486484.5:ENST00000477073.5:ENST00000462696.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	10	111	2	1.8376	2.170285	2.50297	0.00813403	0.00135188	0.0810802	0.0336321
chr14	77759913	77760013	5928954	0	-	0.38	(0.378,0.408]	chr14	563854	44	INTRON	INTRON	SNW1	ENSG00000100603.14	ENST00000261531.12:ENST00000554775.5:ENST00000556428.5:ENST00000555761.5:ENST00000554324.1:ENST00000557663.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	72	2	1.98888	2.17028	2.35168	0.0205239	0.0046563	0.110999	0.0629753
chr7	100217134	100217232	3364273	0	+	0.367347	(0.35,0.378]	chr7	314593	29	INTRON	INTRON	STAG3	ENSG00000066923.18	ENST00000451963.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	8	100	2	2.01993	2.17027	2.32061	0.00730316	0.00545884	0.073467	0.0669938
chr9	131141598	131141697	4215788	0	+	0.444444	(0.44,0.476]	chr9	386554	10	EXON_MRNA	EXON_MRNA:INTRON	NUP214	ENSG00000126883.19	ENST00000695497.1:ENST00000695498.1:ENST00000695496.1:ENST00000695495.1:ENST00000695494.1:ENST00000695493.1:ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000525561.2:ENST00000651022.1:ENST00000695499.1:ENST00000530863.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	65	701	2	2.06739	2.170245	2.2731	2.00987e-4	2.2142e-5	0.0129814	0.00367209
chr16	89788923	89789022	6544527	0	-	0.525253	(0.515,0.57]	chr16	634547	34	INTRON	INTRON	FANCA	ENSG00000187741.16	ENST00000561667.2:ENST00000389301.8:ENST00000568369.6:ENST00000564475.6:ENST00000696275.1:ENST00000696287.1:ENST00000696286.1:ENST00000696274.1:ENST00000696291.1:ENST00000696276.1:ENST00000567205.2:ENST00000567284.7:ENST00000696277.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	103	2	1.95538	2.17016	2.38494	0.00361448	0.00164178	0.0533855	0.0373835
chr16	16586986	16587086	6311732	0	+	0.43	(0.408,0.44]	chr16	604098	870	INTRON	INTRON	ENSG00000260126	ENSG00000260126.2	ENST00000567465.2	lncRNA	lncRNA	lncRNA	lncRNA	3	37	2	1.94273	2.170115	2.3975	0.0456237	0.040266	0.161534	0.149888
chr2	55593536	55593635	1124879	0	-	0.424242	(0.408,0.44]	chr2	120665	42	INTRON	INTRON	PPP4R3B	ENSG00000275052.5	ENST00000616407.2:ENST00000611717.4:ENST00000616288.4	protein_coding	protein_coding	protein_coding	protein_coding	3	37	2	1.94273	2.170115	2.3975	0.0456237	0.040266	0.161534	0.149888
chr5	139294622	139294716	2499388	0	+	0.404255	(0.378,0.408]	chr5	238908	2	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	MATR3	ENSG00000280987.4:ENSG00000015479.20	ENST00000509990.5:ENST00000506147.5:ENST00000512107.5:ENST00000361059.7:ENST00000394800.6:ENST00000502929.5:ENST00000504203.5:ENST00000514694.5:ENST00000509644.5:ENST00000505016.2:ENST00000502394.1:ENST00000512876.5:ENST00000513678.5:ENST00000513121.1:ENST00000504045.5:ENST00000504311.5:ENST00000502499.5:ENST00000510056.5:ENST00000511249.5:ENST00000394805.8:ENST00000507860.1:ENST00000509918.5:ENST00000503811.5:ENST00000511978.5:ENST00000618441.5:ENST00000508689.1:ENST00000514528.5:ENST00000504643.5:ENST00000514488.1:ENST00000503340.1:ENST00000504023.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	76	2	1.78414	2.170105	2.55607	0.0144669	0.00704647	0.105142	0.0718189
chr16	24730152	24730252	6329217	0	+	0.47	(0.44,0.476]	chr16	605929	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TNRC6A	ENSG00000090905.19	ENST00000566108.2:ENST00000395799.8:ENST00000315183.11:ENST00000562829.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	80	2	1.60467	2.1700600000000003	2.73545	0.0411383	7.908e-4	0.1451	0.0258324
chr8	9777129	9777228	3701756	0	+	0.323232	(0.32,0.35]	chr8	343368	5	UTR3	UTR3:EXON_MRNA	TNKS	ENSG00000173273.16	ENST00000310430.11	protein_coding	protein_coding	protein_coding	protein_coding	12	120	2	1.292	2.170045	3.04809	0.0341968	0.00120984	0.146882	0.0317954
chr19	47164145	47164244	7084215	0	+	0.414141	(0.408,0.44]	chr19	708792	66	INTRON	INTRON	SAE1	ENSG00000142230.13	ENST00000594144.5:ENST00000413379.7:ENST00000600706.5:ENST00000270225.12:ENST00000598840.5:ENST00000414294.6:ENST00000660039.1:ENST00000664120.1:ENST00000596995.1:ENST00000392776.3:ENST00000659110.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	58	2	1.78881	2.16992	2.55103	0.0370259	0.00587353	0.139194	0.0690758
chr21	37448848	37448948	7407050	0	+	0.46	(0.44,0.476]	chr21	754891	181	INTRON	INTRON	DYRK1A	ENSG00000157540.22	ENST00000646523.1:ENST00000647425.1:ENST00000647188.2:ENST00000647504.1:ENST00000644942.1:ENST00000338785.8:ENST00000643624.1:ENST00000643551.1:ENST00000426672.6:ENST00000398960.7:ENST00000646548.1:ENST00000645424.1:ENST00000643854.1:ENST00000455097.6:ENST00000642309.1:ENST00000645774.1:ENST00000398956.2	protein_coding	protein_coding	protein_coding	protein_coding	8	80	2	1.4592	2.16991	2.88062	0.0342963	0.001878	0.147255	0.039073
chr5	43297587	43297666	2614271	0	-	0.582278	(0.57,1]	chr5	248511	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HMGCS1	ENSG00000112972.15	ENST00000325110.11:ENST00000433297.2	protein_coding	protein_coding	protein_coding	protein_coding	8	43	2	1.91668	2.16975	2.42282	0.00879576	0.0051891	0.0790073	0.0654282
chr1	28740989	28741080	58386	0	+	0.56044	(0.515,0.57]	chr1	7597	2	INTRON	INTRON	YTHDF2	ENSG00000198492.16	ENST00000542507.5:ENST00000474884.5:ENST00000373812.8:ENST00000541996.5:ENST00000478283.5:ENST00000496288.5:ENST00000476976.1:ENST00000475796.5:ENST00000468863.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	41	2	1.9459	2.169705	2.39351	0.0429089	0.0100431	0.148082	0.0881096
chr2	113916087	113916186	854506	0	+	0.313131	(0.28,0.32]	chr2	95903	25	INTRON	INTRON	ACTR3	ENSG00000115091.12	ENST00000443297.5:ENST00000263238.7:ENST00000415792.5:ENST00000446821.5:ENST00000535589.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	55	2	1.94591	2.16969	2.39347	0.0504457	0.0228482	0.156383	0.125519
chr3	15792328	15792428	1623765	0	-	0.38	(0.378,0.408]	chr3	168013	103	INTRON	INTRON	ANKRD28	ENSG00000206560.12	ENST00000399451.6:ENST00000624145.3:ENST00000683139.1:ENST00000412318.5:ENST00000497037.5:ENST00000451422.1:ENST00000498524.5:ENST00000439830.5:ENST00000461696.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	50	2	2.16303	2.169555	2.17608	0.0252473	0.0218783	0.123836	0.12011
chr2	43956884	43956984	1110214	0	-	0.25	[0,0.28]	chr2	119071	1	SS5_PROX	SS5_PROX:INTRON	LRPPRC	ENSG00000138095.20	ENST00000260665.12:ENST00000682308.1:ENST00000683459.1:ENST00000683623.1:ENST00000683125.1:ENST00000683994.1:ENST00000684619.1:ENST00000683833.1:ENST00000682546.1:ENST00000682585.1:ENST00000683220.1:ENST00000683796.1:ENST00000682607.1:ENST00000683590.1:ENST00000684306.1:ENST00000683213.1:ENST00000682779.1:ENST00000682885.1:ENST00000684743.1:ENST00000683346.1:ENST00000683072.1:ENST00000682303.1:ENST00000683329.1:ENST00000682933.1:ENST00000684383.1:ENST00000682480.1:ENST00000684290.1:ENST00000684341.1:ENST00000682595.1:ENST00000683645.1:ENST00000683802.1:ENST00000681961.1:ENST00000683694.1:ENST00000683989.1:ENST00000447246.2:ENST00000409659.6:ENST00000682104.1:ENST00000683934.1:ENST00000681959.1:ENST00000684482.1:ENST00000683082.1:ENST00000467058.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	104	2	2.06426	2.16955	2.27484	0.0168952	0.0111236	0.110899	0.0877424
chr15	41350587	41350687	6004952	0	+	0.31	(0.28,0.32]	chr15	571310	2	SS3_PROX	SS3_PROX:INTRON	NUSAP1	ENSG00000137804.14	ENST00000668273.1:ENST00000260359.10:ENST00000558123.5:ENST00000559046.5:ENST00000414849.6:ENST00000450592.6:ENST00000559596.6:ENST00000558582.5:ENST00000560747.5:ENST00000560177.5:ENST00000557840.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	89	2	1.83303	2.169525	2.50602	0.0370023	0.00290205	0.139194	0.0494641
chr9	130876339	130876437	4215493	0	+	0.285714	(0.28,0.32]	chr9	386466	9	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000318560.6	protein_coding	protein_coding	protein_coding	protein_coding	18	252	2	1.82336	2.1695200000000003	2.51568	0.0035934	5.59411e-4	0.0551482	0.0218577
chr20	3889932	3890032	7226897	0	+	0.53	(0.515,0.57]	chr20	734466	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	PANK2	ENSG00000125779.24	ENST00000497424.5:ENST00000316562.9:ENST00000495692.5:ENST00000610179.7:ENST00000643504.2:ENST00000336066.8:ENST00000646394.1:ENST00000621507.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	41	2	2.15051	2.169505	2.1885	0.0238113	0.0202537	0.121364	0.118889
chr5	149549703	149549793	2751067	0	-	0.522222	(0.515,0.57]	chr5	259088	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CSNK1A1	ENSG00000113712.19	ENST00000261798.10:ENST00000377843.8:ENST00000657001.1:ENST00000515768.6:ENST00000606719.6:ENST00000657462.1:ENST00000661952.1:ENST00000504676.5:ENST00000515435.5:ENST00000662268.1:ENST00000657706.1:ENST00000670598.1:ENST00000523203.5:ENST00000515748.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	41	2	2.15051	2.169505	2.1885	0.0238113	0.0202537	0.121364	0.118889
chr3	15776262	15776362	1623603	0	-	0.3	(0.28,0.32]	chr3	168009	96	INTRON	INTRON	ANKRD28	ENSG00000206560.12	ENST00000399451.6:ENST00000624145.3:ENST00000683139.1:ENST00000412318.5:ENST00000497037.5:ENST00000451422.1:ENST00000498524.5:ENST00000439830.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	61	2	1.86684	2.16947	2.4721	0.0605813	0.00906617	0.171122	0.0854289
chr4	87336894	87336989	2198728	0	-	0.231579	[0,0.28]	chr4	215736	5	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	HSD17B11	ENSG00000198189.11	ENST00000358290.9:ENST00000507518.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	79	2	1.43909	2.169455	2.89982	0.0526509	0.0158893	0.178401	0.101453
chr11	2947832	2947932	4891527	0	-	0.59	(0.57,1]	chr11	458261	18	INTRON	INTRON	NAP1L4	ENSG00000205531.13	ENST00000620138.4:ENST00000380542.9:ENST00000469805.5:ENST00000469089.5:ENST00000526115.5:ENST00000492594.6:ENST00000526023.5:ENST00000492685.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	48	2	1.14179	2.16943	3.19707	0.0669313	2.16062e-4	0.183051	0.0129138
chr11	46804874	46804973	4948342	0	-	0.474747	(0.44,0.476]	chr11	463813	27	INTRON	INTRON	CKAP5	ENSG00000175216.15	ENST00000529230.6:ENST00000312055.9:ENST00000354558.7	protein_coding	protein_coding	protein_coding	protein_coding	8	89	2	2.10892	2.169415	2.22991	0.0132897	0.00208483	0.0944742	0.0424672
chr3	168009379	168009478	1854062	0	-	0.333333	(0.32,0.35]	chr3	186338	8	UTR3	UTR3:EXON_MRNA	GOLIM4	ENSG00000173905.9	ENST00000470487.6	protein_coding	protein_coding	protein_coding	protein_coding	11	145	2	2.04813	2.169265	2.2904	0.00362627	0.00266524	0.055479	0.0463154
chr6	99424714	99424814	3166142	0	-	0.36	(0.35,0.378]	chr6	295335	1	SS5_PROX	SS5_PROX:INTRON	PNISR	ENSG00000132424.17	ENST00000681615.1:ENST00000369239.10:ENST00000647811.1:ENST00000481229.2:ENST00000679525.1:ENST00000681611.1:ENST00000438806.5:ENST00000478777.5:ENST00000492294.5:ENST00000498075.1:ENST00000466057.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	72	2	2.01378	2.16921	2.32464	0.0159285	0.00952336	0.101453	0.0863913
chr5	171390619	171390717	2546593	0	+	0.367347	(0.35,0.378]	chr5	243084	6	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	NPM1	ENSG00000181163.14	ENST00000517671.5:ENST00000676613.1:ENST00000678186.1:ENST00000678267.1:ENST00000677297.1:ENST00000521672.6:ENST00000679190.1:ENST00000677467.1:ENST00000678280.1:ENST00000676625.1:ENST00000679006.1:ENST00000351986.10:ENST00000676504.1:ENST00000676589.1:ENST00000677357.1:ENST00000679233.1:ENST00000296930.10:ENST00000393820.2:ENST00000521260.2:ENST00000518587.2:ENST00000678774.1:ENST00000521710.2:ENST00000677600.1:ENST00000677741.1:ENST00000523622.1:ENST00000677325.1:ENST00000677672.1:ENST00000677907.1:ENST00000677904.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	68	2	2.04358	2.1692	2.29482	0.0329533	0.00743782	0.145171	0.0746192
chr1	182388847	182388944	599039	0	-	0.391753	(0.378,0.408]	chr1	71414	2	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	GLUL	ENSG00000135821.19	ENST00000331872.11:ENST00000642379.1:ENST00000311223.9:ENST00000417584.6:ENST00000339526.8:ENST00000491322.1:ENST00000463851.6:ENST00000484996.5:ENST00000489818.5:ENST00000475808.5:ENST00000480604.5:ENST00000462444.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	105	2	2.10836	2.1691649999999996	2.22997	0.00477089	0.00375851	0.0602209	0.0562562
chr6	132795595	132795693	3222799	0	-	0.397959	(0.378,0.408]	chr6	299650	44	INTRON	INTRON	SLC18B1	ENSG00000146409.12	ENST00000275227.9:ENST00000647932.1:ENST00000650278.1:ENST00000650136.1:ENST00000650298.1:ENST00000367918.1:ENST00000460518.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	77	2	1.98727	2.16915	2.35103	0.014158	0.00639052	0.0959618	0.0726555
chr1	193166290	193166390	285064	0	+	0.51	(0.476,0.515]	chr1	32819	47	INTRON	INTRON	CDC73	ENSG00000134371.14	ENST00000649895.1:ENST00000643006.1:ENST00000367435.5:ENST00000650197.1:ENST00000648071.1:ENST00000635846.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	50	2	1.8388	2.169105	2.49941	0.0564473	0.00811651	0.184423	0.0766625
chr17	63801508	63801606	6661242	0	+	0.438776	(0.408,0.44]	chr17	649980	5	INTRON	INTRON	DDX42	ENSG00000198231.14	ENST00000578681.5:ENST00000583590.5:ENST00000389924.7:ENST00000359353.9:ENST00000578137.5:ENST00000584261.5:ENST00000577940.6:ENST00000579511.1:ENST00000577978.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	50	2	1.7519	2.16907	2.58624	0.0273686	0.0239555	0.129259	0.123904
chr2	112646306	112646384	852060	0	+	0.782051	(0.57,1]	chr2	95558	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SLC20A1	ENSG00000144136.11	ENST00000272542.8	protein_coding	protein_coding	protein_coding	protein_coding	7	43	2	1.62421	2.16906	2.71391	0.0376752	6.82348e-4	0.156361	0.0239168
chr3	57593199	57593298	1706248	0	-	0.272727	[0,0.28]	chr3	175950	84	INTRON	INTRON	ARF4	ENSG00000168374.11	ENST00000303436.11:ENST00000496292.5:ENST00000489843.1:ENST00000486310.5:ENST00000483848.5:ENST00000463880.1:ENST00000493378.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	84	2	2.06426	2.16905	2.27384	0.0233847	0.0168952	0.11839	0.110899
chr3	138683277	138683377	1829961	0	-	0.44	(0.408,0.44]	chr3	183948	2	SS5_PROX	SS5_PROX:INTRON	PIK3CB	ENSG00000051382.9	ENST00000674063.1:ENST00000289153.6:ENST00000477593.5:ENST00000469284.6:ENST00000544716.5:ENST00000462898.5:ENST00000481749.5:ENST00000493568.5:ENST00000473435.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	125	2	1.85142	2.169045	2.48667	0.0127811	3.18514e-4	0.0926667	0.0159645
chr3	6513564	6513664	1356376	0	+	0.52	(0.515,0.57]	chr3	142508	4	INTRON	INTRON	ENSG00000189229	ENSG00000189229.12	ENST00000660158.1:ENST00000433639.1:ENST00000655754.1:ENST00000653839.1:ENST00000662846.1:ENST00000659876.1:ENST00000414438.2:ENST00000658468.1:ENST00000414603.1:ENST00000669512.1:ENST00000667028.1:ENST00000655541.1:ENST00000668643.1:ENST00000671568.1:ENST00000671036.1:ENST00000669798.1:ENST00000655753.1:ENST00000655856.1:ENST00000658398.1:ENST00000661518.1:ENST00000661279.1:ENST00000655495.1:ENST00000663041.1:ENST00000659827.1:ENST00000667716.1:ENST00000662508.1:ENST00000668416.1:ENST00000658133.1:ENST00000659651.1:ENST00000342990.4:ENST00000660054.1:ENST00000671370.1	lncRNA	lncRNA	lncRNA	lncRNA	6	58	2	1.94449	2.169	2.39351	0.0122196	0.0100431	0.0910127	0.0881096
chr1	52392551	52392649	456948	0	-	0.326531	(0.32,0.35]	chr1	54887	29	INTRON	INTRON	ORC1	ENSG00000085840.13	ENST00000371568.8:ENST00000371566.1	protein_coding	protein_coding	protein_coding	protein_coding	5	57	2	1.59364	2.168895	2.74415	0.0413426	0.0198267	0.161557	0.109608
chr2	172578700	172578799	920133	0	+	0.323232	(0.32,0.35]	chr2	101374	75	INTRON	INTRON	PDK1	ENSG00000152256.14	ENST00000392571.6:ENST00000410055.5:ENST00000282077.8:ENST00000466437.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	58	2	1.76503	2.1688300000000003	2.57263	0.0312297	0.0240772	0.13151	0.129859
chr16	84728478	84728578	6410188	0	+	0.51	(0.476,0.515]	chr16	615272	116	INTRON	INTRON	USP10	ENSG00000103194.16	ENST00000562743.5:ENST00000540269.6:ENST00000563892.5:ENST00000562092.1:ENST00000569511.5:ENST00000219473.12:ENST00000570191.5:ENST00000563048.5:ENST00000562283.5:ENST00000563386.5:ENST00000569038.5:ENST00000570053.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	66	2	1.75142	2.1687849999999997	2.58615	0.0259024	0.00515536	0.121522	0.0650394
chr6	124976883	124976982	2951617	0	+	0.393939	(0.378,0.408]	chr6	277674	49	INTRON	INTRON	RNF217	ENSG00000146373.17	ENST00000521654.7:ENST00000560949.5:ENST00000519565.5:ENST00000454842.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	60	2	1.63458	2.16878	2.70298	0.0573057	0.00325723	0.167723	0.0524329
chr9	123210484	123210584	4339896	0	-	0.4	(0.378,0.408]	chr9	398947	258	INTRON	INTRON	STRBP	ENSG00000165209.19	ENST00000348403.10:ENST00000360998.3:ENST00000407982.6:ENST00000479114.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	60	2	1.63458	2.16878	2.70298	0.0573057	0.00325723	0.167723	0.0524329
chr10	73439371	73439471	4649571	0	-	0.34	(0.32,0.35]	chr10	427853	1	SS5_PROX	SS5_PROX:INTRON	PPP3CB	ENSG00000107758.16	ENST00000360663.10:ENST00000394828.6:ENST00000394829.6:ENST00000430762.6	protein_coding	protein_coding	protein_coding	protein_coding	4	51	2	1.55682	2.168775	2.78073	0.0724487	0.01481	0.188101	0.106702
chr8	125950375	125950475	3859369	0	+	0.39	(0.378,0.408]	chr8	355335	73	INTRON	INTRON	ENSG00000286122	ENSG00000286122.1	ENST00000651999.1:ENST00000652177.1	lncRNA	lncRNA	lncRNA	lncRNA	21	239	2	1.91726	2.16874	2.42022	0.00252633	1.11287e-4	0.0446985	0.00897498
chr10	32344611	32344711	4591619	0	-	0.54	(0.515,0.57]	chr10	423379	383	INTRON	INTRON	EPC1	ENSG00000120616.16	ENST00000375110.6:ENST00000319778.11:ENST00000667706.1:ENST00000263062.8:ENST00000479380.2:ENST00000495790.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	44	2	1.58964	2.16868	2.74772	0.0408	0.0142192	0.1451	0.103638
chr5	62307319	62307419	2362041	0	+	0.4	(0.378,0.408]	chr5	227714	1	SS5_PROX	SS5_PROX:INTRON	KIF2A	ENSG00000068796.19	ENST00000401507.7:ENST00000407818.8:ENST00000674632.1:ENST00000674916.1:ENST00000676413.1:ENST00000676122.1:ENST00000674751.1:ENST00000514082.6:ENST00000675085.1:ENST00000504883.2:ENST00000381103.7:ENST00000676271.1:ENST00000512541.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	60	2	1.82258	2.16861	2.51464	0.0341279	0.00684341	0.135102	0.0748032
chr7	100639603	100639702	3587330	0	-	0.40404	(0.378,0.408]	chr7	334545	57	INTRON	INTRON	TFR2	ENSG00000106327.13	ENST00000431692.5:ENST00000462107.1:ENST00000223051.8:ENST00000465294.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	60	2	1.82258	2.16861	2.51464	0.0341279	0.00684341	0.135102	0.0748032
chr16	88661816	88661911	6539316	0	-	0.189474	[0,0.28]	chr16	633758	6	INTRON	INTRON	MVD	ENSG00000167508.12	ENST00000301012.8:ENST00000569177.5:ENST00000567064.5:ENST00000568133.5:ENST00000563785.5:ENST00000568709.5:ENST00000563170.5:ENST00000565610.5:ENST00000563463.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	13	198	2	1.78112	2.16859	2.55606	0.00718307	0.00226642	0.0756118	0.0425751
chr18	73221049	73221149	6988183	0	-	0.36	(0.35,0.378]	chr18	691704	199	INTRON	INTRON	LINC02864	ENSG00000263711.6	ENST00000584544.5:ENST00000581011.5:ENST00000581862.6:ENST00000669547.1:ENST00000661525.1:ENST00000583405.5	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	7	80	2	1.85092	2.1685749999999997	2.48623	0.0114682	0.00938784	0.0956037	0.0817766
chr5	889952	890046	2564605	0	-	0.361702	(0.35,0.378]	chr5	245522	3	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	BRD9	ENSG00000028310.18	ENST00000467963.6:ENST00000495265.5:ENST00000490814.6:ENST00000495794.5:ENST00000489816.5:ENST00000483173.5:ENST00000466684.5:ENST00000489093.1:ENST00000487688.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	83	2	1.74668	2.16857	2.59046	0.0198631	0.00528327	0.109608	0.0656295
chr1	19203806	19203905	386778	0	-	0.40404	(0.378,0.408]	chr1	46143	16	INTRON	INTRON	UBR4	ENSG00000127481.15	ENST00000375254.8	protein_coding	protein_coding	protein_coding	protein_coding	6	57	2	1.54765	2.168555	2.78946	0.0334147	0.0158859	0.146709	0.101453
chr14	101778429	101778529	5818662	0	+	0.39	(0.378,0.408]	chr14	551819	115	INTRON	INTRON	PPP2R5C	ENSG00000078304.20	ENST00000694906.1:ENST00000422945.6:ENST00000554442.5:ENST00000556068.5:ENST00000328724.9:ENST00000554504.1:ENST00000553890.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	57	2	1.54765	2.168555	2.78946	0.0334147	0.0158859	0.146709	0.101453
chr22	23202949	23203049	7483431	0	+	0.47	(0.44,0.476]	chr22	763541	32	INTRON	INTRON	BCR	ENSG00000186716.21	ENST00000479188.5:ENST00000359540.7:ENST00000305877.13:ENST00000463770.5:ENST00000487679.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	69	2	2.03034	2.168535	2.30673	0.0173569	0.0055175	0.104189	0.0672816
chr5	138347750	138347849	2494830	0	+	0.474747	(0.44,0.476]	chr5	238465	9	UTR3	UTR3:EXON_MRNA	FAM53C	ENSG00000120709.11	ENST00000239906.10	protein_coding	protein_coding	protein_coding	protein_coding	6	69	2	2.03034	2.168535	2.30673	0.0173569	0.0055175	0.104189	0.0672816
chr7	152324415	152324514	3680173	0	-	0.222222	[0,0.28]	chr7	341641	87	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000684262.1:ENST00000682301.1:ENST00000452749.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	51	2	2.00649	2.16852	2.33055	0.062338	0.040391	0.175343	0.161534
chr7	44877583	44877682	3528699	0	-	0.494949	(0.476,0.515]	chr7	329128	14	UTR3	UTR3:EXON_MRNA	PURB	ENSG00000146676.10	ENST00000395699.5	protein_coding	protein_coding	protein_coding	protein_coding	6	73	2	1.80284	2.168515	2.53419	0.033161	0.00251905	0.145899	0.0446195
chr2	20266446	20266545	1075923	0	-	0.292929	(0.28,0.32]	chr2	114960	26	INTRON	INTRON	PUM2	ENSG00000055917.16	ENST00000338086.9:ENST00000361078.7:ENST00000440577.5	protein_coding	protein_coding	protein_coding	protein_coding	7	102	2	1.64082	2.16842	2.69602	0.0422774	0.00126382	0.148082	0.0329641
chr17	81852157	81852255	6850026	0	-	0.489796	(0.476,0.515]	chr17	678337	38	INTRON	INTRON	P4HB	ENSG00000185624.16	ENST00000680083.1:ENST00000680416.1:ENST00000575069.6:ENST00000681030.1:ENST00000680884.1:ENST00000681161.1:ENST00000681515.1:ENST00000679470.1:ENST00000571617.2:ENST00000679688.1:ENST00000680226.1:ENST00000680400.1:ENST00000574914.2:ENST00000331483.9:ENST00000680914.1:ENST00000680593.1:ENST00000681420.1:ENST00000681693.1:ENST00000576390.6:ENST00000681835.1:ENST00000681954.1:ENST00000681566.1:ENST00000680076.1:ENST00000680105.1:ENST00000680368.1:ENST00000681872.1:ENST00000466567.3:ENST00000679396.1:ENST00000415593.6:ENST00000679889.1:ENST00000681571.1:ENST00000680719.1:ENST00000680191.1:ENST00000680547.1:ENST00000680799.1:ENST00000680208.1:ENST00000679439.1:ENST00000439918.7:ENST00000472244.6:ENST00000681031.1:ENST00000680846.1:ENST00000681068.1:ENST00000477607.7:ENST00000679366.1:ENST00000681020.1:ENST00000681614.1:ENST00000681485.1:ENST00000679628.1:ENST00000679455.1:ENST00000680259.1:ENST00000680559.1:ENST00000680909.1:ENST00000681760.1:ENST00000681933.1:ENST00000570907.6:ENST00000680732.1:ENST00000680838.1:ENST00000680847.1:ENST00000574007.6:ENST00000573778.7:ENST00000478034.5:ENST00000576380.6:ENST00000576052.2:ENST00000471535.2:ENST00000576541.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	57	2	2.01953	2.1683950000000003	2.31726	0.0163662	0.015077	0.109586	0.0994339
chr6	70569352	70569451	2895534	0	+	0.494949	(0.476,0.515]	chr6	274071	18	INTRON	INTRON	SDHAF4	ENSG00000154079.6	ENST00000370474.4	protein_coding	protein_coding	protein_coding	protein_coding	5	57	2	2.01953	2.1683950000000003	2.31726	0.0163662	0.015077	0.109586	0.0994339
chr11	118766445	118766543	5046119	0	-	0.234694	[0,0.28]	chr11	475781	7	INTRON	INTRON	DDX6	ENSG00000110367.14	ENST00000534980.7:ENST00000620157.4:ENST00000526070.2	protein_coding	protein_coding	protein_coding	protein_coding	3	51	2	1.84147	2.16837	2.49527	0.0610416	0.0436497	0.193277	0.14882
chr2	167921634	167921734	1259019	0	-	0.18	[0,0.28]	chr2	133340	205	INTRON	INTRON	B3GALT1-AS1	ENSG00000235335.3	ENST00000430546.2:ENST00000657553.1:ENST00000670221.1:ENST00000436982.2	lncRNA	lncRNA	lncRNA	lncRNA	3	51	2	1.84147	2.16837	2.49527	0.0610416	0.0436497	0.193277	0.14882
chr7	149485128	149485228	3671707	0	-	0.28	[0,0.28]	chr7	340777	70	INTRON	INTRON	ZNF746	ENSG00000181220.18	ENST00000644635.1:ENST00000340622.8:ENST00000458143.7:ENST00000685153.1	protein_coding	protein_coding	protein_coding	protein_coding	3	51	2	1.84147	2.16837	2.49527	0.0610416	0.0436497	0.193277	0.14882
chr10	43404125	43404225	4605456	0	-	0.59	(0.57,1]	chr10	424262	69	INTRON	INTRON	HNRNPF	ENSG00000169813.17	ENST00000356053.7:ENST00000357065.8:ENST00000682386.1:ENST00000337970.7	protein_coding	protein_coding	protein_coding	protein_coding	8	47	2	2.0955	2.16833	2.24116	0.00622614	0.00307807	0.0718276	0.0496321
chr9	123443761	123443860	4341137	0	-	0.434343	(0.408,0.44]	chr9	399020	29	INTRON	INTRON	DENND1A	ENSG00000119522.17	ENST00000373624.6:ENST00000473039.5:ENST00000394215.7:ENST00000373620.7:ENST00000491650.5:ENST00000497135.5:ENST00000373618.1:ENST00000479305.5:ENST00000462245.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	58	2	1.93002	2.168315	2.40661	0.022095	0.011475	0.123903	0.0888882
chr1	229536873	229536972	653548	0	-	0.484848	(0.476,0.515]	chr1	77458	18	INTRON	INTRON	ABCB10	ENSG00000135776.5	ENST00000344517.5	protein_coding	protein_coding	protein_coding	protein_coding	3	36	2	2.13854	2.1683149999999998	2.19809	0.0776563	0.020317	0.196285	0.121522
chr2	238191831	238191928	1344129	0	-	0.494845	(0.476,0.515]	chr2	140927	15	INTRON	INTRON	ILKAP	ENSG00000132323.9	ENST00000254654.8:ENST00000463129.5:ENST00000612675.4:ENST00000622223.4:ENST00000457149.1:ENST00000498727.5:ENST00000467133.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	36	2	2.13854	2.1683149999999998	2.19809	0.0776563	0.020317	0.196285	0.121522
chr5	159185143	159185242	2758942	0	-	0.484848	(0.476,0.515]	chr5	260356	27	INTRON	INTRON	RNF145	ENSG00000145860.12	ENST00000424310.7:ENST00000519865.5:ENST00000274542.6:ENST00000611185.4:ENST00000521606.6:ENST00000518802.5:ENST00000520638.1:ENST00000520548.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	36	2	2.13854	2.1683149999999998	2.19809	0.0776563	0.020317	0.196285	0.121522
chr12	111569378	111569478	5412933	0	-	0.42	(0.408,0.44]	chr12	516941	46	INTRON	INTRON	ATXN2	ENSG00000204842.18	ENST00000642389.2:ENST00000608853.5:ENST00000672613.1:ENST00000673436.1:ENST00000643669.2:ENST00000616825.4:ENST00000389153.10:ENST00000550104.5:ENST00000483311.6:ENST00000672335.1:ENST00000673557.1:ENST00000673283.1:ENST00000673449.1:ENST00000535949.5:ENST00000542287.6:ENST00000644883.1:ENST00000647305.1:ENST00000671792.1:ENST00000392645.6:ENST00000672105.1:ENST00000549455.1:ENST00000548492.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	48	2	2.00228	2.1682949999999996	2.33431	0.0389732	0.0129219	0.143072	0.0990564
chr16	14477390	14477489	6448286	0	-	0.424242	(0.408,0.44]	chr16	621185	66	INTRON	INTRON	PARN	ENSG00000140694.17	ENST00000651865.1:ENST00000437198.7:ENST00000651348.1:ENST00000650990.1:ENST00000651760.1:ENST00000652541.1:ENST00000652727.1:ENST00000652066.1:ENST00000651300.1:ENST00000420015.6:ENST00000652051.1:ENST00000341484.11:ENST00000539279.5:ENST00000564882.5:ENST00000651049.1:ENST00000650960.1:ENST00000651634.1:ENST00000564113.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	48	2	2.00228	2.1682949999999996	2.33431	0.0389732	0.0129219	0.143072	0.0990564
chr17	50746802	50746902	6627262	0	+	0.41	(0.408,0.44]	chr17	647244	1	SS5_PROX	SS5_PROX:INTRON	LUC7L3	ENSG00000108848.16	ENST00000393227.6:ENST00000505658.6:ENST00000240304.5:ENST00000508482.5:ENST00000504065.5:ENST00000509487.1:ENST00000511974.5:ENST00000513969.5:ENST00000503728.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	48	2	2.00228	2.1682949999999996	2.33431	0.0389732	0.0129219	0.143072	0.0990564
chr9	136385114	136385214	4374171	0	-	0.42	(0.408,0.44]	chr9	402780	3	SS3_PROX	SS3_PROX:INTRON	SNAPC4	ENSG00000165684.6	ENST00000689006.1:ENST00000684778.1:ENST00000298532.2:ENST00000637388.2:ENST00000682698.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	48	2	2.00228	2.1682949999999996	2.33431	0.0389732	0.0129219	0.143072	0.0990564
chr16	88592596	88592695	6418486	0	+	0.454545	(0.44,0.476]	chr16	615804	46	INTRON	INTRON	ZC3H18	ENSG00000158545.16	ENST00000301011.10:ENST00000452588.6:ENST00000569435.5:ENST00000567085.1	protein_coding	protein_coding	protein_coding	protein_coding	4	48	2	2.14573	2.1682550000000003	2.19078	0.0238593	0.0226089	0.129075	0.117489
chr19	28502839	28502939	7166123	0	-	0.42	(0.408,0.44]	chr19	724189	346	INTRON	INTRON	ENSG00000283403:ENSG00000267243	ENSG00000283403.1:ENSG00000267243.6	ENST00000592347.5:ENST00000593065.5	lncRNA	lncRNA	lncRNA	lncRNA	24	242	2	1.54699	2.1682	2.78941	0.00534191	5.97154e-5	0.0663076	0.00678902
chr2	20281664	20281761	1076077	0	-	0.329897	(0.32,0.35]	chr2	114966	25	INTRON	INTRON	PUM2	ENSG00000055917.16	ENST00000338086.9:ENST00000361078.7:ENST00000440577.5	protein_coding	protein_coding	protein_coding	protein_coding	7	93	2	2.06533	2.16815	2.27097	0.0174225	0.00347642	0.10453	0.0540643
chr17	37210066	37210166	6761032	0	-	0.37	(0.35,0.378]	chr17	664768	2	SS5_PROX	SS5_PROX:INTRON	ACACA	ENSG00000278540.5	ENST00000616317.5:ENST00000614428.4:ENST00000612895.4:ENST00000617649.4:ENST00000614450.4:ENST00000612120.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	64	2	1.99351	2.168145	2.34278	0.020841	0.0129593	0.111648	0.0991015
chr1	204537137	204537233	297631	0	+	0.21875	[0,0.28]	chr1	34294	2	SS3_PROX	SS3_PROX:INTRON	MDM4	ENSG00000198625.14	ENST00000367183.7:ENST00000391947.6:ENST00000454264.6:ENST00000612738.4:ENST00000614459.4:ENST00000616250.4:ENST00000367182.8:ENST00000463049.5:ENST00000470908.5:ENST00000471783.1:ENST00000507825.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	198	2	1.87556	2.16806	2.46056	0.0133173	7.34852e-4	0.0945146	0.0247332
chrX	73984841	73984941	7682507	0	+	0.35	(0.32,0.35]	chrX	786643	3	SS5_PROX	SS5_PROX:INTRON	JPX	ENSG00000225470.8	ENST00000664637.1:ENST00000639185.1:ENST00000655090.1:ENST00000640437.1:ENST00000660546.1:ENST00000667886.1:ENST00000660840.1:ENST00000657179.1:ENST00000670506.1:ENST00000657910.1:ENST00000662120.1:ENST00000671207.1:ENST00000659254.1:ENST00000656624.1:ENST00000667573.1:ENST00000660856.1:ENST00000660836.1:ENST00000668590.1:ENST00000658649.1:ENST00000414209.6:ENST00000654137.1:ENST00000670994.1:ENST00000602772.5:ENST00000655879.1:ENST00000657372.1:ENST00000657096.1:ENST00000602985.6:ENST00000670685.1:ENST00000670503.1:ENST00000663027.1:ENST00000654995.1:ENST00000602895.6:ENST00000654374.1:ENST00000660087.1:ENST00000665032.1:ENST00000671336.1:ENST00000671476.1:ENST00000667057.1:ENST00000670192.1:ENST00000670464.1:ENST00000665345.1:ENST00000661546.1:ENST00000662543.1:ENST00000602938.6:ENST00000664295.1:ENST00000654005.1:ENST00000669149.1:ENST00000659852.1:ENST00000656509.1:ENST00000602294.6:ENST00000667294.1:ENST00000663470.1:ENST00000602920.6:ENST00000671021.1:ENST00000659849.1:ENST00000667937.1:ENST00000661130.1:ENST00000654196.1:ENST00000655994.1:ENST00000659373.1:ENST00000662239.1:ENST00000670805.1:ENST00000656263.1:ENST00000653069.1:ENST00000657638.1:ENST00000653808.1:ENST00000653929.1:ENST00000653885.1:ENST00000659023.1:ENST00000602546.5:ENST00000659622.1:ENST00000671518.1:ENST00000670408.1	lncRNA	lncRNA	lncRNA	lncRNA	6	77	2	1.80487	2.16797	2.53107	0.0210603	0.00860484	0.122559	0.0784134
chr17	46167240	46167339	6784612	0	-	0.343434	(0.32,0.35]	chr17	669232	100	INTRON	INTRON	KANSL1	ENSG00000120071.15	ENST00000574590.6:ENST00000572904.6:ENST00000432791.7:ENST00000575318.6:ENST00000638275.1:ENST00000262419.10:ENST00000648792.1:ENST00000639531.1:ENST00000639150.1:ENST00000639853.1:ENST00000571698.2:ENST00000639375.1:ENST00000638269.1:ENST00000576248.2:ENST00000639356.1:ENST00000574655.6:ENST00000639099.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	9	101	2	1.64168	2.167945	2.69421	0.014976	0.00484681	0.107704	0.0605691
chr18	36902204	36902304	6893568	0	+	0.41	(0.408,0.44]	chr18	683221	159	INTRON	INTRON	KIAA1328	ENSG00000150477.15	ENST00000592611.5:ENST00000280020.10:ENST00000590617.5:ENST00000587139.5:ENST00000591619.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	49	2	1.43792	2.167935	2.89795	0.062843	0.0110735	0.196433	0.0873897
chr22	21439570	21439670	7481395	0	+	0.42	(0.408,0.44]	chr22	763209	185	INTRON	INTRON	HIC2	ENSG00000169635.10	ENST00000407464.7:ENST00000407598.2	protein_coding	protein_coding	protein_coding	protein_coding	5	49	2	1.43792	2.167935	2.89795	0.062843	0.0110735	0.196433	0.0873897
chr18	9951058	9951156	6873723	0	+	0.244898	[0,0.28]	chr18	680901	6	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	VAPA	ENSG00000101558.14	ENST00000400000.7:ENST00000340541.4:ENST00000584796.5:ENST00000583879.5:ENST00000583475.1:ENST00000577539.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	62	2	1.84046	2.167865	2.49527	0.0436497	0.0335889	0.14882	0.146709
chr1	247188430	247188526	683888	0	-	0.520833	(0.515,0.57]	chr1	80179	13	EXON_LNCRNA	EXON_LNCRNA	ENSG00000259865	ENSG00000259865.1	ENST00000566446.1	lncRNA	lncRNA	lncRNA	lncRNA	6	59	2	1.97035	2.1678450000000002	2.36534	0.0195832	0.00404547	0.109483	0.0578376
chr22	49652825	49652925	7602616	0	-	0.4	(0.378,0.408]	chr22	778594	254	INTRON	INTRON	MIR3667HG	ENSG00000188511.13	ENST00000414287.5:ENST00000416411.1:ENST00000689875.1:ENST00000400023.5:ENST00000405854.5	lncRNA	lncRNA	lncRNA	lncRNA	9	106	2	2.04763	2.1677799999999996	2.28793	0.00619436	0.00291235	0.0678171	0.0494641
chr3	6537920	6538020	1356620	0	+	0.4	(0.378,0.408]	chr3	142508	248	INTRON	INTRON	ENSG00000189229	ENSG00000189229.12	ENST00000660158.1:ENST00000433639.1:ENST00000655754.1:ENST00000653839.1:ENST00000662846.1:ENST00000659876.1:ENST00000414438.2:ENST00000658468.1:ENST00000414603.1:ENST00000669512.1:ENST00000667028.1:ENST00000655541.1:ENST00000668643.1:ENST00000671568.1:ENST00000671036.1:ENST00000669798.1:ENST00000655753.1:ENST00000655856.1:ENST00000658398.1:ENST00000661518.1:ENST00000661279.1:ENST00000655495.1:ENST00000663041.1:ENST00000659827.1:ENST00000667716.1:ENST00000662508.1:ENST00000668416.1:ENST00000658133.1:ENST00000659651.1:ENST00000342990.4:ENST00000660054.1:ENST00000671370.1	lncRNA	lncRNA	lncRNA	lncRNA	9	106	2	2.04763	2.1677799999999996	2.28793	0.00619436	0.00291235	0.0678171	0.0494641
chr10	5769389	5769487	4544474	0	-	0.540816	(0.515,0.57]	chr10	419766	1	INTRON	INTRON	GDI2	ENSG00000057608.17	ENST00000380191.9:ENST00000447751.5:ENST00000380181.7	protein_coding	protein_coding	protein_coding	protein_coding	6	59	2	2.11384	2.16775	2.22166	0.0118599	0.00735516	0.0899583	0.0765982
chrX	48916387	48916486	7815674	0	-	0.565657	(0.515,0.57]	chrX	796810	6	INTRON	INTRON	PIM2	ENSG00000102096.9	ENST00000376509.4	protein_coding	protein_coding	protein_coding	protein_coding	6	59	2	2.11384	2.16775	2.22166	0.0118599	0.00735516	0.0899583	0.0765982
chr6	99414271	99414371	3166034	0	-	0.27	[0,0.28]	chr6	295324	3	SS5_PROX	SS5_PROX:INTRON	PNISR	ENSG00000132424.17	ENST00000681615.1:ENST00000369239.10:ENST00000647811.1:ENST00000481229.2:ENST00000679525.1:ENST00000681611.1:ENST00000438806.5:ENST00000478777.5:ENST00000492294.5:ENST00000498075.1:ENST00000466057.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	64	2	2.06426	2.167725	2.27119	0.070351	0.0168952	0.184298	0.110899
chr8	125952771	125952871	3859393	0	+	0.21	[0,0.28]	chr8	355336	3	SS3_PROX	SS3_PROX:INTRON	ENSG00000286122	ENSG00000286122.1	ENST00000651999.1:ENST00000652177.1	lncRNA	lncRNA	lncRNA	lncRNA	4	64	2	2.06426	2.167725	2.27119	0.070351	0.0168952	0.184298	0.110899
chr9	123259743	123259843	4340393	0	-	0.41	(0.408,0.44]	chr9	398963	224	INTRON	INTRON	STRBP	ENSG00000165209.19	ENST00000348403.10:ENST00000360998.3:ENST00000407982.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	36	2	2.14732	2.167695	2.18807	0.0708044	0.0237354	0.184528	0.129075
chr21	37079516	37079615	7404883	0	+	0.353535	(0.35,0.378]	chr21	754521	57	INTRON	INTRON	TTC3	ENSG00000182670.14	ENST00000492275.6:ENST00000418766.6:ENST00000485402.5:ENST00000450533.6:ENST00000438055.5:ENST00000696812.1:ENST00000696811.1:ENST00000463216.6:ENST00000481605.6:ENST00000540756.5:ENST00000494243.5:ENST00000399010.5:ENST00000411496.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	63	2	2.09331	2.1676349999999998	2.24196	0.0315717	0.00744693	0.13151	0.0772645
chr7	87178745	87178845	3345899	0	+	0.26	[0,0.28]	chr7	311675	37	INTRON	INTRON	DMTF1	ENSG00000135164.19	ENST00000413276.6:ENST00000447863.5:ENST00000579677.5:ENST00000425406.5:ENST00000547146.6:ENST00000579850.5:ENST00000331242.12:ENST00000430405.7:ENST00000432937.6:ENST00000584619.5:ENST00000394703.9:ENST00000412139.6:ENST00000425705.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	73	2	1.83992	2.167595	2.49527	0.0436497	0.0212029	0.14882	0.123192
chr8	129473158	129473258	4060006	0	-	0.43	(0.408,0.44]	chr8	369602	159	INTRON	INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1:ENST00000676273.1:ENST00000667643.1:ENST00000668791.1:ENST00000663716.1:ENST00000663572.1:ENST00000676148.1:ENST00000667962.1:ENST00000674877.1:ENST00000675316.1:ENST00000674656.1:ENST00000446592.7:ENST00000667341.1:ENST00000675186.1:ENST00000652971.1:ENST00000661447.1:ENST00000674863.1:ENST00000675498.1:ENST00000675527.1:ENST00000676108.1:ENST00000657647.1:ENST00000675589.1:ENST00000675913.1:ENST00000675109.1:ENST00000671632.1:ENST00000671311.1:ENST00000676099.1:ENST00000660652.1:ENST00000675522.1:ENST00000675183.1:ENST00000658861.1:ENST00000663991.1:ENST00000675044.1:ENST00000675435.1:ENST00000674639.1:ENST00000676069.1:ENST00000675532.1:ENST00000674762.1:ENST00000523151.6:ENST00000675948.1:ENST00000665364.1:ENST00000657251.1:ENST00000675166.1:ENST00000674883.1:ENST00000675867.1:ENST00000674580.1:ENST00000675393.1:ENST00000520048.1:ENST00000674906.1:ENST00000676030.1:ENST00000670588.1:ENST00000675072.1:ENST00000664936.1:ENST00000652914.1:ENST00000657069.1	lncRNA	lncRNA	lncRNA	lncRNA	5	58	2	1.64062	2.167595	2.69457	0.0557275	0.00331036	0.165463	0.0527031
chr7	99453872	99453965	3362010	0	+	0.526882	(0.515,0.57]	chr7	314010	3	EXON_MRNA	EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CPSF4	ENSG00000160917.15	ENST00000436336.6:ENST00000292476.10:ENST00000451876.5:ENST00000441580.5:ENST00000452047.1:ENST00000471455.1:ENST00000440514.1:ENST00000469897.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	11	107	2	1.40421	2.1675500000000003	2.93089	0.0324924	1.05321e-4	0.145164	0.00920724
chr1	207347246	207347346	303532	0	+	0.49	(0.476,0.515]	chr1	34927	4	SS3_PROX	SS3_PROX:INTRON	CD55	ENSG00000196352.18	ENST00000695822.1:ENST00000695823.1:ENST00000695826.1:ENST00000695825.1:ENST00000695827.1:ENST00000645323.1:ENST00000391921.9:ENST00000367064.9:ENST00000314754.12:ENST00000644836.1:ENST00000476590.1:ENST00000465534.5:ENST00000618707.2:ENST00000635614.2:ENST00000695831.1:ENST00000634386.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	72	2	1.86014	2.16755	2.47496	0.0277606	0.00323541	0.137011	0.0507251
chr21	46224509	46224606	7470837	0	-	0.463918	(0.44,0.476]	chr21	761544	14	INTRON	INTRON	LSS	ENSG00000160285.15	ENST00000356396.8:ENST00000397728.8:ENST00000457828.6:ENST00000522411.5:ENST00000464357.1:ENST00000450351.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	69	2	1.94723	2.16743	2.38763	0.0227424	0.00394089	0.117618	0.0573041
chr5	10365935	10366034	2317769	0	+	0.434343	(0.408,0.44]	chr5	224612	109	INTRON	INTRON	MARCHF6	ENSG00000145495.16	ENST00000274140.10:ENST00000449913.6:ENST00000502795.5:ENST00000511802.5:ENST00000503788.5:ENST00000640713.1:ENST00000510872.5:ENST00000507863.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	14	154	2	2.16538	2.16743	2.16948	0.00236307	8.63582e-4	0.0437545	0.0266494
chr19	1422696	1422796	6995253	0	+	0.55	(0.515,0.57]	chr19	693199	3	SS5_PROX	SS5_PROX:INTRON	DAZAP1	ENSG00000071626.17	ENST00000336761.10:ENST00000233078.9:ENST00000592522.5:ENST00000586579.5:ENST00000587079.5:ENST00000592453.2:ENST00000589484.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	15	140	2	1.94371	2.167385	2.39106	0.00287969	2.85786e-4	0.0475859	0.0150568
chr3	187076981	187077079	1587665	0	+	0.428571	(0.408,0.44]	chr3	164421	13	UTR3	UTR3:EXON_MRNA	ST6GAL1	ENSG00000073849.16	ENST00000169298.8:ENST00000457772.6:ENST00000677292.1:ENST00000676633.1:ENST00000448044.5:ENST00000416235.6:ENST00000470633.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	91	2	2.00842	2.167305	2.32619	0.0108512	0.00239266	0.0873034	0.0450826
chr6	35645242	35645342	3087083	0	-	0.46	(0.44,0.476]	chr6	288789	20	INTRON	INTRON	FKBP5	ENSG00000096060.15	ENST00000536438.5:ENST00000539068.5:ENST00000357266.9:ENST00000542713.1	protein_coding	protein_coding	protein_coding	protein_coding	4	43	2	1.87325	2.1673	2.46135	0.0374637	0.0265709	0.140008	0.134088
chr9	123174242	123174342	4339529	0	-	0.46	(0.44,0.476]	chr9	398925	4	SS3_PROX	SS3_PROX:INTRON	STRBP	ENSG00000165209.19	ENST00000348403.10:ENST00000447404.6:ENST00000360998.3:ENST00000407982.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	43	2	1.87325	2.1673	2.46135	0.0374637	0.0265709	0.140008	0.134088
chr19	28533100	28533200	7166426	0	-	0.36	(0.35,0.378]	chr19	724189	649	INTRON	INTRON	ENSG00000283403:ENSG00000267243	ENSG00000283403.1:ENSG00000267243.6	ENST00000592347.5:ENST00000593065.5	lncRNA	lncRNA	lncRNA	lncRNA	14	154	2	1.72329	2.167235	2.61118	0.00556639	9.76258e-4	0.0676594	0.0284677
chrX	44926184	44926284	7649132	0	+	0.48	(0.476,0.515]	chrX	782726	518	INTRON	INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000675440.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000621147.5:ENST00000475233.1:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	73	2	1.87849	2.167235	2.45598	0.00992862	0.00945755	0.0877296	0.0817766
chr10	68750976	68751075	4442572	0	+	0.353535	(0.35,0.378]	chr10	409640	9	INTRON	INTRON	CCAR1	ENSG00000060339.14	ENST00000630771.2:ENST00000543719.5:ENST00000541012.5:ENST00000265872.11:ENST00000539539.5:ENST00000543229.5:ENST00000536012.5:ENST00000543225.5:ENST00000540210.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	97	2	1.47679	2.167215	2.85764	0.0466814	4.6759e-4	0.151623	0.0195867
chr1	201856134	201856234	292035	0	+	0.44	(0.408,0.44]	chr1	33572	2	SS5_PROX	SS5_PROX:INTRON	IPO9	ENSG00000198700.10	ENST00000361565.9	protein_coding	protein_coding	protein_coding	protein_coding	4	48	2	1.94273	2.1671750000000003	2.39162	0.0456237	0.0105837	0.149888	0.0911864
chr10	21701707	21701807	4406107	0	+	0.43	(0.408,0.44]	chr10	406537	47	INTRON	INTRON	MLLT10	ENSG00000078403.17	ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000651298.1:ENST00000377059.7:ENST00000651382.1:ENST00000438473.6:ENST00000420525.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	48	2	1.94273	2.1671750000000003	2.39162	0.0456237	0.0105837	0.149888	0.0911864
chr21	44962357	44962457	7417685	0	+	0.44	(0.408,0.44]	chr21	756231	18	INTRON	INTRON	SLX9	ENSG00000160256.13	ENST00000397826.7:ENST00000458015.1:ENST00000291634.11:ENST00000479127.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	48	2	1.94273	2.1671750000000003	2.39162	0.0456237	0.0105837	0.149888	0.0911864
chr2	74160250	74160349	1156942	0	-	0.40404	(0.378,0.408]	chr2	123703	6	INTRON	INTRON	MOB1A	ENSG00000114978.18	ENST00000396049.5:ENST00000497054.5:ENST00000495286.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	45	2	1.94559	2.16716	2.38873	0.0458857	0.0211434	0.149888	0.122929
chr22	37837007	37837106	7586210	0	-	0.393939	(0.378,0.408]	chr22	776446	24	INTRON	INTRON	ANKRD54	ENSG00000100124.15	ENST00000215941.9:ENST00000406423.5:ENST00000609454.5:ENST00000411961.6:ENST00000458278.6:ENST00000407117.6:ENST00000464849.5:ENST00000413497.5:ENST00000424350.5:ENST00000434930.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	45	2	1.94559	2.16716	2.38873	0.0458857	0.0211434	0.149888	0.122929
chr1	1548481	1548581	360058	0	-	0.48	(0.476,0.515]	chr1	41847	21	INTRON	INTRON	SSU72	ENSG00000160075.12	ENST00000291386.4:ENST00000378725.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	37	2	2.05154	2.16709	2.28264	0.0534132	0.0336015	0.179876	0.134145
chr1	10107674	10107774	19884	0	+	0.48	(0.476,0.515]	chr1	1881	3	SS5_PROX	SS5_PROX:INTRON	UBE4B	ENSG00000130939.20	ENST00000672724.1:ENST00000253251.12:ENST00000343090.11	protein_coding	protein_coding	protein_coding	protein_coding	3	37	2	2.05154	2.16709	2.28264	0.0534132	0.0336015	0.179876	0.134145
chr18	9179685	9179785	6869360	0	+	0.48	(0.476,0.515]	chr18	680561	415	INTRON	INTRON	ANKRD12	ENSG00000101745.17	ENST00000585234.5:ENST00000262126.9:ENST00000577992.1:ENST00000540578.6:ENST00000581635.5:ENST00000400020.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	100	2	2.09066	2.16709	2.24352	0.00772252	0.0019689	0.0756858	0.0411469
chr2	191691964	191692064	960506	0	+	0.48	(0.476,0.515]	chr2	104307	63	UTR3	UTR3:EXON_MRNA	NABP1	ENSG00000173559.15	ENST00000674262.1:ENST00000674360.1:ENST00000674406.1:ENST00000674414.1:ENST00000410026.7:ENST00000674172.1:ENST00000674187.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	37	2	2.05154	2.16709	2.28264	0.0534132	0.0336015	0.179876	0.134145
chr7	16116592	16116692	3490400	0	-	0.49	(0.476,0.515]	chr7	326181	244	INTRON	INTRON	CRPPA	ENSG00000214960.11	ENST00000407010.7:ENST00000399310.3:ENST00000676325.1:ENST00000675257.1	protein_coding	protein_coding	protein_coding	protein_coding	3	37	2	2.05154	2.16709	2.28264	0.0534132	0.0336015	0.179876	0.134145
chr19	1435396	1435493	6995388	0	+	0.42268	(0.408,0.44]	chr19	693229	6	UTR3	UTR3:EXON_MRNA	DAZAP1	ENSG00000071626.17	ENST00000336761.10:ENST00000233078.9:ENST00000592522.5:ENST00000587079.5:ENST00000589484.5:ENST00000585485.2:ENST00000589874.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	12	134	2	1.98949	2.16708	2.34467	0.00523528	7.0284e-4	0.0633615	0.0241881
chr5	54301798	54301898	2620831	0	-	0.44	(0.408,0.44]	chr5	248862	156	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2:ENST00000505630.5:ENST00000505383.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	48	2	2.05947	2.1670550000000004	2.27464	0.0333232	0.0158016	0.134145	0.109464
chr1	21692978	21693077	395931	0	-	0.464646	(0.44,0.476]	chr1	47211	25	INTRON	INTRON	USP48	ENSG00000090686.16	ENST00000400301.5:ENST00000308271.14:ENST00000374732.7:ENST00000529637.5:ENST00000464577.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	79	2	1.76195	2.166975	2.572	0.0252608	0.00173736	0.12011	0.03851
chr20	56373856	56373956	7358696	0	-	0.51	(0.476,0.515]	chr20	750345	3	SS3_PROX	SS3_PROX:INTRON	AURKA	ENSG00000087586.18	ENST00000395914.5:ENST00000395913.7:ENST00000312783.10:ENST00000395911.5:ENST00000395915.8:ENST00000347343.6:ENST00000371356.6:ENST00000395907.5:ENST00000441357.5	protein_coding	protein_coding	protein_coding	protein_coding	5	59	2	2.13573	2.16691	2.19809	0.020317	0.0119549	0.121522	0.0899583
chr2	47174559	47174647	1114879	0	-	0.397727	(0.378,0.408]	chr2	119575	5	INTRON	INTRON	CALM2	ENSG00000143933.20	ENST00000272298.12:ENST00000652974.1:ENST00000655450.1:ENST00000432899.5:ENST00000456319.6:ENST00000656538.1:ENST00000668667.1:ENST00000655728.1:ENST00000409563.5:ENST00000484408.5:ENST00000489742.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	51	2	1.66594	2.1668950000000002	2.66785	0.0320222	0.0224639	0.144995	0.11692
chr16	18920944	18921043	6458056	0	-	0.484848	(0.476,0.515]	chr16	622895	94	INTRON	INTRON	SMG1	ENSG00000157106.18	ENST00000446231.7:ENST00000532700.6:ENST00000569122.1	protein_coding	protein_coding	protein_coding	protein_coding	4	48	2	1.79693	2.16682	2.53671	0.0649782	0.00624027	0.179417	0.0718843
chr2	96881282	96881381	1182037	0	-	0.484848	(0.476,0.515]	chr2	126720	24	INTRON	INTRON	FAM178B	ENSG00000168754.15	ENST00000393526.6:ENST00000490605.3:ENST00000470789.5:ENST00000494172.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	48	2	1.79693	2.16682	2.53671	0.0649782	0.00624027	0.179417	0.0718843
chr9	125310797	125310893	4198755	0	+	0.489583	(0.476,0.515]	chr9	383196	4	INTRON	INTRON	GAPVD1	ENSG00000165219.23	ENST00000497580.5:ENST00000297933.11:ENST00000470056.5:ENST00000394105.6:ENST00000394083.6:ENST00000495955.5:ENST00000467750.5:ENST00000394104.6:ENST00000312123.13:ENST00000431329.5:ENST00000436712.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	48	2	1.79693	2.16682	2.53671	0.0649782	0.00624027	0.179417	0.0718843
chrX	71380144	71380244	7678350	0	+	0.3	(0.28,0.32]	chrX	786162	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	TAF1	ENSG00000147133.17	ENST00000683202.1:ENST00000373790.9:ENST00000683352.1:ENST00000423759.6:ENST00000683782.1:ENST00000683715.1:ENST00000683668.1:ENST00000276072.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	10	136	2	1.68939	2.1668149999999997	2.64424	0.0172148	0.00159565	0.104099	0.0367961
chr5	177035127	177035227	2553055	0	+	0.5	(0.476,0.515]	chr5	243771	115	INTRON	INTRON	ZNF346	ENSG00000113761.12	ENST00000512315.5:ENST00000358149.8:ENST00000506693.5:ENST00000503425.5:ENST00000508155.5:ENST00000511834.5:ENST00000503039.1:ENST00000513587.5:ENST00000510933.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	57	2	2.11679	2.16678	2.21677	0.0207026	0.0115627	0.110999	0.0962115
chr1	35186312	35186406	420529	0	-	0.361702	(0.35,0.378]	chr1	50656	14	INTRON	INTRON	SFPQ	ENSG00000116560.12	ENST00000470472.5:ENST00000460428.5:ENST00000696553.1:ENST00000357214.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	32	380	2	2.05519	2.16676	2.27833	8.61476e-4	8.84851e-5	0.0267898	0.00791674
chr2	177223264	177223363	926028	0	+	0.232323	[0,0.28]	chr2	101764	41	UTR3	UTR3:EXON_MRNA	HNRNPA3	ENSG00000170144.21	ENST00000679159.1:ENST00000678111.1:ENST00000678421.1:ENST00000677863.1:ENST00000676681.1:ENST00000676629.1:ENST00000677337.1:ENST00000676488.1:ENST00000677043.1:ENST00000676874.1:ENST00000676762.1:ENST00000411529.6:ENST00000676736.1:ENST00000483137.2:ENST00000677508.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	41	617	2	1.44971	2.16675	2.88379	0.0144277	1.05683e-5	0.0971766	0.00237296
chr7	87891623	87891722	3346831	0	+	0.333333	(0.32,0.35]	chr7	311868	32	INTRON	INTRON	DBF4	ENSG00000006634.8	ENST00000413643.5:ENST00000265728.6:ENST00000431138.5:ENST00000430279.5:ENST00000498144.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	56	2	1.83416	2.166725	2.49929	0.0631198	0.00776612	0.176946	0.0787356
chr17	60281446	60281545	6804762	0	-	0.50505	(0.476,0.515]	chr17	672336	96	INTRON	INTRON	USP32	ENSG00000170832.13	ENST00000300896.9:ENST00000590133.5:ENST00000589335.5:ENST00000393003.7	protein_coding	protein_coding	protein_coding	protein_coding	4	43	2	1.52615	2.1667199999999998	2.80729	0.0739267	0.0126008	0.190914	0.0980703
chr17	57998033	57998132	6799957	0	-	0.454545	(0.44,0.476]	chr17	671423	33	INTRON	INTRON	ENSG00000266086	ENSG00000266086.3	ENST00000578794.2:ENST00000665125.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	13	144	2	2.06568	2.16667	2.26766	0.00202294	0.00145091	0.0416117	0.0343893
chr1	109373586	109373686	520776	0	-	0.42	(0.408,0.44]	chr1	61195	36	INTRON	INTRON	SORT1	ENSG00000134243.12	ENST00000538502.5:ENST00000256637.8:ENST00000493736.5:ENST00000482236.5:ENST00000633956.1:ENST00000471996.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	91	2	1.94531	2.166665	2.38802	0.0136489	0.00178825	0.0949306	0.0392749
chr6	33260999	33261098	3082308	0	-	0.333333	(0.32,0.35]	chr6	288175	87	INTRON	INTRON	VPS52	ENSG00000223501.9	ENST00000478934.5:ENST00000482399.5:ENST00000445902.3:ENST00000495981.5:ENST00000493674.5:ENST00000471309.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	59	2	1.42542	2.16664	2.90786	0.0718205	0.00993008	0.187046	0.0877296
chr22	38487572	38487672	7587892	0	-	0.45	(0.44,0.476]	chr22	776717	3	SS5_PROX	SS5_PROX:INTRON	DDX17	ENSG00000100201.23	ENST00000403230.3:ENST00000396821.8:ENST00000431312.2:ENST00000216019.11	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	12	126	2	1.7649	2.166615	2.56833	0.00641957	9.93239e-4	0.072984	0.0288872
chr3	14408734	14408834	1369453	0	+	0.35	(0.32,0.35]	chr3	144308	55	INTRON	INTRON	SLC6A6	ENSG00000131389.18	ENST00000613060.4:ENST00000618278.4:ENST00000610642.4:ENST00000622810.4:ENST00000649500.1:ENST00000622186.5:ENST00000621751.4:ENST00000613930.4:ENST00000622176.4:ENST00000615188.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	81	2	1.92705	2.16661	2.40617	0.0267365	0.0040507	0.123349	0.0578376
chr15	52032666	52032766	6029157	0	+	0.42	(0.408,0.44]	chr15	574427	44	INTRON	INTRON	MAPK6	ENSG00000069956.14	ENST00000560802.1:ENST00000691380.1:ENST00000558063.5:ENST00000560254.1:ENST00000681888.1:ENST00000261845.7:ENST00000680066.1:ENST00000680777.1:ENST00000558100.1:ENST00000680652.1:ENST00000558841.1:ENST00000558891.1:ENST00000560774.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	128	2	2.07066	2.1665900000000002	2.26252	0.00399285	0.00143638	0.0550622	0.0347139
chr4	55404734	55404834	1960678	0	+	0.32	(0.28,0.32]	chr4	196553	10	INTRON	INTRON	TMEM165	ENSG00000134851.13	ENST00000381334.10:ENST00000506198.5:ENST00000508404.5:ENST00000511710.1:ENST00000502797.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	14	204	2	1.39368	2.16658	2.93948	0.0390633	3.76512e-5	0.143072	0.00491469
chr6	17623264	17623363	3065356	0	-	0.343434	(0.32,0.35]	chr6	284764	62	INTRON	INTRON	NUP153	ENSG00000124789.12	ENST00000613258.4:ENST00000537253.5:ENST00000262077.3	protein_coding	protein_coding	protein_coding	protein_coding	7	94	2	1.9182	2.16656	2.41492	0.0141462	0.00513727	0.103512	0.062965
chr17	32364348	32364444	6598129	0	+	0.40625	(0.378,0.408]	chr17	641919	10	INTRON	INTRON	ZNF207	ENSG00000010244.19	ENST00000321233.10:ENST00000394673.6:ENST00000394670.9:ENST00000342555.10:ENST00000577908.5:ENST00000394679.9:ENST00000581531.5:ENST00000579416.1:ENST00000582705.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	70	2	1.94426	2.166495	2.38873	0.0458857	0.00520377	0.149888	0.0655609
chr12	79932495	79932595	5376509	0	-	0.41	(0.408,0.44]	chr12	512797	187	INTRON	INTRON	PPP1R12A	ENSG00000058272.19	ENST00000261207.9:ENST00000450142.7:ENST00000437004.6:ENST00000550107.5:ENST00000547330.5:ENST00000550510.5	protein_coding	protein_coding	protein_coding	protein_coding	7	60	2	1.38001	2.1664849999999998	2.95296	0.0444754	0.00929354	0.162826	0.0817766
chr20	58391539	58391639	7289568	0	+	0.51	(0.476,0.515]	chr20	741668	8	INTRON	INTRON	VAPB	ENSG00000124164.16	ENST00000475243.6:ENST00000395802.7:ENST00000520497.1:ENST00000265619.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	48	2	2.06491	2.1664	2.26789	0.0304733	0.0176567	0.143385	0.105233
chr20	17961329	17961424	7320494	0	-	0.378947	(0.378,0.408]	chr20	745331	3	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	SNX5	ENSG00000089006.17	ENST00000377768.7:ENST00000490175.5:ENST00000483485.5:ENST00000377759.9:ENST00000431277.5:ENST00000419004.2:ENST00000474883.5:ENST00000475716.5:ENST00000469704.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	52	2	1.89621	2.16639	2.43657	0.0488044	0.0106733	0.173377	0.0861859
chr18	35333109	35333207	6961933	0	-	0.336735	(0.32,0.35]	chr18	688889	10	UTR3	UTR3:EXON_MRNA	ZNF24	ENSG00000172466.16	ENST00000399061.3:ENST00000261332.11:ENST00000589881.5	protein_coding	protein_coding	protein_coding	protein_coding	12	137	2	1.61535	2.166295	2.71724	0.0112729	0.00152305	0.0944799	0.0353936
chr2	70247506	70247605	1152458	0	-	0.434343	(0.408,0.44]	chr2	123109	110	INTRON	INTRON	C2orf42:TIA1	ENSG00000115998.8:ENSG00000116001.17	ENST00000470096.1:ENST00000415783.6:ENST00000433529.7:ENST00000282574.8:ENST00000445587.5:ENST00000416149.6:ENST00000474809.6:ENST00000477044.6:ENST00000496452.5:ENST00000481650.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	43	2	1.81759	2.166255	2.51492	0.0329839	0.0316273	0.144405	0.133816
chr3	47758058	47758158	1684838	0	-	0.37	(0.35,0.378]	chr3	172116	117	INTRON	INTRON	SMARCC1	ENSG00000173473.11	ENST00000254480.10:ENST00000425518.5:ENST00000454240.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	39	2	2.1617	2.166245	2.17079	0.0771502	0.0225978	0.196285	0.124921
chr3	170137861	170137960	1861386	0	-	0.555556	(0.515,0.57]	chr3	186639	8	INTRON	INTRON	PHC3	ENSG00000173889.16	ENST00000495893.7:ENST00000494943.5:ENST00000467570.5:ENST00000484931.5:ENST00000479467.5:ENST00000466189.5:ENST00000475729.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	56	2	1.79385	2.16615	2.53845	0.0201222	0.00632226	0.121243	0.0687526
chr17	78110469	78110568	6844292	0	-	0.535354	(0.515,0.57]	chr17	677097	32	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TMC6	ENSG00000141524.18	ENST00000590602.6:ENST00000589217.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	68	2	1.48827	2.16607	2.84387	0.0301583	0.0018149	0.142572	0.0384415
chr6	26130111	26130210	2837053	0	+	0.525253	(0.515,0.57]	chr6	266010	50	INTRON	INTRON	H2AC6	ENSG00000180573.10	ENST00000314088.6:ENST00000602637.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	68	2	1.48827	2.16607	2.84387	0.0301583	0.0018149	0.142572	0.0384415
chr17	32362646	32362724	6598111	0	+	0.269231	[0,0.28]	chr17	641914	4	SS3_PROX	SS3_PROX:INTRON	ZNF207	ENSG00000010244.19	ENST00000321233.10:ENST00000394673.6:ENST00000394670.9:ENST00000342555.10:ENST00000577908.5:ENST00000394679.9:ENST00000581531.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	134	2	2.0256	2.166005	2.30641	0.0213596	0.0038935	0.113755	0.0568626
chr22	16797474	16797574	7546374	0	-	0.51	(0.476,0.515]	chr22	771315	127	INTRON	INTRON	XKR3	ENSG00000172967.8	ENST00000331428.5:ENST00000684488.1	protein_coding	protein_coding	protein_coding	protein_coding	7	79	2	1.67283	2.16597	2.65911	0.0332283	0.00116074	0.134145	0.0314098
chr19	5104239	5104338	7004783	0	+	0.545455	(0.515,0.57]	chr19	694855	214	INTRON	INTRON	KDM4B	ENSG00000127663.15	ENST00000159111.9:ENST00000611640.4:ENST00000381759.8:ENST00000536461.5:ENST00000589104.5:ENST00000588961.1:ENST00000588361.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	31	2	1.8707	2.16587	2.46104	0.0523213	0.032841	0.160182	0.145164
chr8	129475453	129475552	4060029	0	-	0.484848	(0.476,0.515]	chr8	369602	182	INTRON	INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1:ENST00000676273.1:ENST00000667643.1:ENST00000668791.1:ENST00000663716.1:ENST00000663572.1:ENST00000676148.1:ENST00000667962.1:ENST00000674877.1:ENST00000675316.1:ENST00000674656.1:ENST00000446592.7:ENST00000667341.1:ENST00000675186.1:ENST00000652971.1:ENST00000661447.1:ENST00000674863.1:ENST00000675498.1:ENST00000675527.1:ENST00000676108.1:ENST00000657647.1:ENST00000675589.1:ENST00000675913.1:ENST00000675109.1:ENST00000671632.1:ENST00000671311.1:ENST00000676099.1:ENST00000660652.1:ENST00000675522.1:ENST00000675183.1:ENST00000658861.1:ENST00000663991.1:ENST00000675044.1:ENST00000675435.1:ENST00000674639.1:ENST00000676069.1:ENST00000675532.1:ENST00000674762.1:ENST00000523151.6:ENST00000675948.1:ENST00000665364.1:ENST00000657251.1:ENST00000675166.1:ENST00000674883.1:ENST00000675867.1:ENST00000674580.1:ENST00000675393.1:ENST00000520048.1:ENST00000674906.1:ENST00000676030.1:ENST00000670588.1:ENST00000675072.1:ENST00000664936.1:ENST00000652914.1:ENST00000657069.1	lncRNA	lncRNA	lncRNA	lncRNA	9	105	2	1.69413	2.165865	2.6376	0.0200655	6.87765e-4	0.121043	0.0240091
chr20	57517680	57517776	7359203	0	-	0.583333	(0.57,1]	chr20	750466	15	INTRON	INTRON	CTCFL	ENSG00000124092.13	ENST00000423479.7:ENST00000429804.7:ENST00000609232.5:ENST00000608263.5:ENST00000243914.8:ENST00000371196.6:ENST00000433949.7:ENST00000502686.6:ENST00000422109.6:ENST00000426658.6:ENST00000608440.5:ENST00000422869.6:ENST00000608425.5:ENST00000539382.5:ENST00000608903.5:ENST00000432255.6:ENST00000608108.1:ENST00000608858.5:ENST00000607923.5:ENST00000608720.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	35	2	1.52818	2.165845	2.80351	0.0508101	0.00172505	0.175989	0.0374701
chr3	28275347	28275446	1390885	0	+	0.484848	(0.476,0.515]	chr3	145643	116	INTRON	INTRON	CMC1	ENSG00000187118.14	ENST00000477739.1:ENST00000423894.5:ENST00000466830.6:ENST00000334841.10:ENST00000418849.2:ENST00000396610.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	79	2	1.99699	2.165795	2.3346	0.0110277	0.00494807	0.0873897	0.0646039
chr6	24712446	24712544	3070657	0	-	0.489796	(0.476,0.515]	chr6	285352	32	INTRON	INTRON	C6orf62	ENSG00000112308.13	ENST00000378119.9:ENST00000378102.3	protein_coding	protein_coding	protein_coding	protein_coding	9	100	2	1.78749	2.1657200000000003	2.54395	0.0157618	8.361e-4	0.101453	0.0263691
chr2	107709611	107709711	1205645	0	-	0.34	(0.32,0.35]	chr2	128526	59	INTRON	INTRON	LINC01885:ENSG00000286769	ENSG00000237880.2:ENSG00000286769.1	ENST00000654481.1:ENST00000669817.1	lncRNA	lncRNA	lncRNA	lncRNA	13	167	2	1.80021	2.165455	2.5307	0.00620439	9.13824e-4	0.0716222	0.0278396
chr9	128226673	128226771	4203295	0	+	0.438776	(0.408,0.44]	chr9	384064	1	INTRON	INTRON	DNM1	ENSG00000106976.21	ENST00000372923.8:ENST00000341179.11:ENST00000475805.5:ENST00000393594.7:ENST00000628346.2:ENST00000486160.3:ENST00000627543.2:ENST00000627061.2:ENST00000634267.2:ENST00000637999.1:ENST00000441149.6:ENST00000482638.6:ENST00000637317.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	59	2	1.75791	2.16543	2.57295	0.0378795	0.00640423	0.157034	0.0694534
chr3	32685882	32685982	1393112	0	+	0.44	(0.408,0.44]	chr3	145830	4	SS5_PROX	SS5_PROX:INTRON	CNOT10	ENSG00000182973.20	ENST00000331889.10:ENST00000328834.10:ENST00000435630.5:ENST00000494439.5:ENST00000556853.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	101	2	2.1269	2.1654299999999997	2.20396	0.00691204	0.00235889	0.0718189	0.0445848
chr11	31474086	31474186	4938882	0	-	0.33	(0.32,0.35]	chr11	462590	3	SS3_PROX	SS3_PROX:INTRON	IMMP1L	ENSG00000148950.11	ENST00000532287.6:ENST00000534812.5:ENST00000526776.5:ENST00000278200.5:ENST00000648582.1:ENST00000533642.1:ENST00000527184.5:ENST00000528161.5:ENST00000532624.5:ENST00000529749.5:ENST00000530023.5:ENST00000531693.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	41	2	1.95271	2.165325	2.37794	0.0498601	0.0431213	0.162255	0.156383
chr16	110224	110324	6425474	0	-	0.33	(0.32,0.35]	chr16	617342	3	SS5_PROX	SS5_PROX:INTRON	NPRL3	ENSG00000103148.17	ENST00000611875.5:ENST00000622194.4:ENST00000621703.4:ENST00000399953.7:ENST00000473674.5:ENST00000457916.5:ENST00000483663.5:ENST00000422814.5:ENST00000468260.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	41	2	1.95271	2.165325	2.37794	0.0498601	0.0431213	0.162255	0.156383
chr2	152726170	152726269	894326	0	+	0.333333	(0.32,0.35]	chr2	99117	2	EXON_MRNA	EXON_MRNA:INTRON	ARL6IP6	ENSG00000177917.12	ENST00000690727.1:ENST00000685752.1:ENST00000688293.1:ENST00000686839.1:ENST00000689155.1:ENST00000691702.1:ENST00000691523.1:ENST00000688012.1:ENST00000687504.1:ENST00000455875.6:ENST00000692124.1:ENST00000693573.1:ENST00000692399.1:ENST00000425034.6:ENST00000686080.1:ENST00000326446.10:ENST00000463690.2:ENST00000688130.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	41	2	1.95271	2.165325	2.37794	0.0498601	0.0431213	0.162255	0.156383
chr19	3207787	3207886	6999081	0	+	0.555556	(0.515,0.57]	chr19	694152	2	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	NCLN	ENSG00000125912.11	ENST00000590671.5:ENST00000246117.9:ENST00000587740.5:ENST00000592737.5:ENST00000592235.1:ENST00000591062.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	37	2	1.49871	2.165295	2.83188	0.0770828	0.0108207	0.196285	0.0920575
chr5	141581614	141581714	2739803	0	-	0.33	(0.32,0.35]	chr5	258132	3	SS5_PROX	SS5_PROX:INTRON	DIAPH1	ENSG00000131504.18	ENST00000647433.1:ENST00000389054.8:ENST00000518047.5:ENST00000647330.1:ENST00000523100.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	77	2	2.02327	2.16529	2.30731	0.0176772	0.00956045	0.10525	0.0863913
chr10	96145939	96146038	4502356	0	+	0.333333	(0.32,0.35]	chr10	414481	103	INTRON	INTRON	ZNF518A	ENSG00000177853.15	ENST00000614149.2:ENST00000488700.5:ENST00000624776.4:ENST00000539666.5:ENST00000563195.1:ENST00000316045.10	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	41	2	1.88468	2.16524	2.4458	0.0515071	0.0425977	0.176696	0.148082
chr6	167947664	167947752	3035579	0	+	0.340909	(0.32,0.35]	chr6	282863	4	SS3_PROX	SS3_PROX:INTRON	AFDN	ENSG00000130396.21	ENST00000683244.1:ENST00000351017.9:ENST00000344191.8:ENST00000392112.5:ENST00000392108.7:ENST00000400822.7:ENST00000447894.6:ENST00000366809.6:ENST00000366806.6:ENST00000511637.5:ENST00000485634.7:ENST00000507679.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	41	2	1.88468	2.16524	2.4458	0.0515071	0.0425977	0.176696	0.148082
chr11	34443936	34444035	4768699	0	+	0.393939	(0.378,0.408]	chr11	441209	45	INTRON	INTRON	CAT	ENSG00000121691.7	ENST00000241052.5	protein_coding	protein_coding	protein_coding	protein_coding	8	86	2	2.02416	2.16522	2.30628	0.0163339	0.00361901	0.101571	0.0554656
chr5	66163491	66163591	2372688	0	+	0.29	(0.28,0.32]	chr5	228676	10	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	SREK1	ENSG00000153914.16	ENST00000334121.11:ENST00000520953.5:ENST00000522912.5:ENST00000524111.5:ENST00000380918.7:ENST00000284041.7:ENST00000520580.5:ENST00000519259.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	74	2	2.00989	2.1652050000000003	2.32052	0.0427801	0.00612675	0.148082	0.0708525
chr12	121796936	121797033	5439439	0	-	0.556701	(0.515,0.57]	chr12	520128	3	INTRON	INTRON	RHOF:LINC01089	ENSG00000139725.8:ENSG00000212694.8	ENST00000546227.5:ENST00000541657.5:ENST00000545544.1:ENST00000429892.5:ENST00000542933.5:ENST00000537157.5:ENST00000428029.6:ENST00000541694.5:ENST00000543167.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA:processed_transcript	13	93	2	1.12886	2.1651350000000003	3.20141	0.05232	2.65803e-4	0.160182	0.0144243
chr11	66632906	66633005	4810966	0	+	0.353535	(0.35,0.378]	chr11	447879	31	INTRON	INTRON	RBM14-RBM4	ENSG00000248643.5	ENST00000412278.2:ENST00000511114.1:ENST00000421355.1:ENST00000500635.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	52	2	1.93432	2.165075	2.39583	0.0481438	0.0107976	0.153019	0.0920575
chr5	69209985	69210078	2380314	0	+	0.451613	(0.44,0.476]	chr5	229239	3	UTR3	UTR3:EXON_MRNA	CENPH	ENSG00000153044.10	ENST00000515001.5:ENST00000283006.7	protein_coding	protein_coding	protein_coding	protein_coding	9	99	2	1.9037	2.165065	2.42643	0.00735504	0.0033369	0.0739587	0.0528877
chr14	58425378	58425476	5904922	0	-	0.459184	(0.44,0.476]	chr14	560883	9	INTRON	INTRON	TIMM9	ENSG00000100575.14	ENST00000395159.7:ENST00000216463.8:ENST00000555593.5:ENST00000556007.6:ENST00000557397.5:ENST00000556367.6:ENST00000555930.6:ENST00000555404.5:ENST00000555097.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	36	2	1.83899	2.1650549999999997	2.49112	0.0589734	0.0315968	0.167915	0.144381
chr16	24756750	24756849	6329485	0	+	0.444444	(0.44,0.476]	chr16	605939	56	INTRON	INTRON	TNRC6A	ENSG00000090905.19	ENST00000395799.8:ENST00000315183.11:ENST00000562829.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	36	2	1.83899	2.1650549999999997	2.49112	0.0589734	0.0315968	0.167915	0.144381
chr7	6046722	6046811	3476119	0	-	0.460674	(0.44,0.476]	chr7	325218	1	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	EIF2AK1	ENSG00000086232.13	ENST00000199389.11:ENST00000495565.5:ENST00000474029.5:ENST00000431744.5:ENST00000463213.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	79	2	2.07016	2.1650400000000003	2.25992	0.0151815	0.00324123	0.0994339	0.0524329
chr7	157339725	157339820	3455327	0	+	0.505263	(0.476,0.515]	chr7	323048	16	INTRON	INTRON	DNAJB6	ENSG00000105993.15	ENST00000441561.5:ENST00000429029.6:ENST00000262177.9:ENST00000486083.6:ENST00000417758.5:ENST00000459889.5:ENST00000443280.5:ENST00000488001.5:ENST00000441291.5:ENST00000437030.5:ENST00000412557.5:ENST00000453383.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	17	185	2	2.00746	2.16499	2.32252	0.00205968	3.61036e-4	0.0410051	0.0169559
chr16	88932638	88932738	6540852	0	-	0.57	(0.515,0.57]	chr16	634096	303	INTRON	INTRON	CBFA2T3	ENSG00000129993.15	ENST00000268679.9:ENST00000327483.9:ENST00000569464.5:ENST00000569443.5:ENST00000563640.1:ENST00000564416.1:ENST00000570046.1	protein_coding	protein_coding	protein_coding	protein_coding	5	49	2	2.11724	2.1649849999999997	2.21273	0.0196151	0.0110335	0.109486	0.0927187
chr17	77192603	77192702	6679159	0	+	0.535354	(0.515,0.57]	chr17	652373	9	INTRON	INTRON	SEC14L1	ENSG00000129657.16	ENST00000392476.6:ENST00000589827.5:ENST00000430767.8:ENST00000585618.5:ENST00000436233.9:ENST00000443798.8:ENST00000591786.5:ENST00000591437.5:ENST00000588616.6:ENST00000431431.6:ENST00000590483.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	49	2	2.11724	2.1649849999999997	2.21273	0.0196151	0.0110335	0.109486	0.0927187
chr1	186350488	186350573	604157	0	-	0.4	(0.378,0.408]	chr1	72097	1	SS3_PROX	SS3_PROX:INTRON	TPR	ENSG00000047410.14	ENST00000367478.9	protein_coding	protein_coding	protein_coding	protein_coding	5	60	2	1.58349	2.164975	2.74646	0.0653091	0.00271684	0.180158	0.0481064
chr14	30946889	30946989	5857074	0	-	0.52	(0.515,0.57]	chr14	556482	4	SS5_PROX	SS5_PROX:INTRON	STRN3	ENSG00000196792.12	ENST00000355683.9:ENST00000357479.10:ENST00000555358.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	68	2	1.63907	2.164775	2.69048	0.0350277	8.78655e-4	0.137535	0.0269932
chr2	108577883	108577983	846281	0	+	0.44	(0.408,0.44]	chr2	94665	67	INTRON	INTRON	LIMS1	ENSG00000169756.17	ENST00000695516.1:ENST00000544547.6:ENST00000695517.1:ENST00000695518.1	protein_coding	protein_coding	protein_coding	protein_coding	3	36	2	1.74775	2.16477	2.58179	0.0735403	0.024638	0.190238	0.131869
chr2	230735447	230735547	1030385	0	+	0.42	(0.408,0.44]	chr2	110002	210	INTRON	INTRON	CAB39	ENSG00000135932.12	ENST00000258418.10:ENST00000409788.7:ENST00000410084.7	protein_coding	protein_coding	protein_coding	protein_coding	3	36	2	1.74775	2.16477	2.58179	0.0735403	0.024638	0.190238	0.131869
chr22	26524081	26524180	7564394	0	-	0.30303	(0.28,0.32]	chr22	773991	22	UTR3	UTR3:EXON_MRNA	TPST2	ENSG00000128294.16	ENST00000338754.9	protein_coding	protein_coding	protein_coding	protein_coding	4	61	2	2.14002	2.16476	2.1895	0.0304107	0.0227063	0.130461	0.124921
chr15	41037716	41037816	6152426	0	-	0.51	(0.476,0.515]	chr15	585297	96	INTRON	INTRON	INO80	ENSG00000128908.18	ENST00000648947.1:ENST00000401393.7:ENST00000558357.6:ENST00000559995.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	49	2	1.91817	2.1646900000000002	2.41121	0.0459211	0.0110342	0.164984	0.0873897
chr18	697555	697655	6939627	0	-	0.5	(0.476,0.515]	chr18	686436	2	SS3_PROX	SS3_PROX:INTRON	ENOSF1	ENSG00000132199.20	ENST00000647584.2:ENST00000383578.7:ENST00000340116.12:ENST00000581475.5:ENST00000580982.5:ENST00000585128.6:ENST00000584453.5:ENST00000578651.5:ENST00000585004.5:ENST00000579053.5:ENST00000583771.1:ENST00000580605.5:ENST00000581332.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	49	2	1.91817	2.1646900000000002	2.41121	0.0459211	0.0110342	0.164984	0.0873897
chr22	19492536	19492636	7476962	0	+	0.35	(0.32,0.35]	chr22	762407	82	INTRON	INTRON	CDC45	ENSG00000093009.11	ENST00000407835.6:ENST00000437685.6:ENST00000483431.5:ENST00000438587.6:ENST00000672837.1:ENST00000263201.7:ENST00000404724.7:ENST00000487669.5:ENST00000428937.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	122	2	1.51377	2.164485	2.8152	0.0287248	6.37027e-4	0.127066	0.0228285
chr18	46824966	46825065	6965791	0	-	0.333333	(0.32,0.35]	chr18	689456	35	INTRON	INTRON	PIAS2	ENSG00000078043.16	ENST00000585916.6:ENST00000398654.7:ENST00000324794.11:ENST00000545673.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	103	2	2.07821	2.16445	2.25069	0.00934678	0.00473999	0.0817766	0.0634645
chr17	40409030	40409130	6768281	0	-	0.52	(0.515,0.57]	chr17	665967	4	SS3_PROX	SS3_PROX:INTRON	TOP2A	ENSG00000131747.15	ENST00000423485.6	protein_coding	protein_coding	protein_coding	protein_coding	9	74	2	1.69631	2.164405	2.6325	0.0103622	0.00439001	0.0897374	0.0585064
chr1	227256044	227256143	651095	0	-	0.272727	[0,0.28]	chr1	77108	15	INTRON	INTRON	CDC42BPA	ENSG00000143776.20	ENST00000366766.8:ENST00000366769.7:ENST00000334218.9:ENST00000366767.7:ENST00000366764.8:ENST00000478573.6:ENST00000682551.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	51	2	2.05756	2.1643749999999997	2.27119	0.070351	0.0352544	0.184298	0.150301
chr20	35741487	35741556	7336557	0	-	0.333333	(0.32,0.35]	chr20	747515	1	UTR5	UTR5:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RBM39	ENSG00000131051.24	ENST00000253363.11:ENST00000639702.1:ENST00000656873.1:ENST00000463004.5:ENST00000361162.10:ENST00000403542.6:ENST00000338163.10:ENST00000528062.7:ENST00000429968.5:ENST00000444878.5:ENST00000665058.1:ENST00000374038.7:ENST00000412738.5:ENST00000434927.5:ENST00000455343.5:ENST00000416108.5:ENST00000442447.5:ENST00000433027.5:ENST00000453310.5:ENST00000416529.5:ENST00000397370.3:ENST00000463098.5:ENST00000461849.1:ENST00000493853.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	119	2	2.00192	2.1643499999999998	2.32678	0.00848699	0.00272092	0.0778788	0.0481508
chr1	109215945	109216044	179612	0	+	0.464646	(0.44,0.476]	chr1	19612	9	INTRON	INTRON	SARS1	ENSG00000031698.13	ENST00000234677.7:ENST00000477544.5:ENST00000369923.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	49	2	1.65297	2.164345	2.67572	0.0331814	0.0212064	0.145918	0.113017
chr21	10452713	10452805	7368523	0	+	0.467391	(0.44,0.476]	chr21	751979	3	INTRON	INTRON	BAGE2	ENSG00000187172.15	ENST00000470054.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	5	49	2	1.65297	2.164345	2.67572	0.0331814	0.0212064	0.145918	0.113017
chr12	110296071	110296152	5226248	0	+	0.382716	(0.378,0.408]	chr12	495241	2	EXON_LNCRNA	EXON_LNCRNA:SS3_PROX:INTRON	ATP2A2	ENSG00000174437.18	ENST00000552636.2:ENST00000308664.10:ENST00000539276.7:ENST00000377685.9:ENST00000548169.2:ENST00000550248.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	19	221	2	1.81898	2.164325	2.50967	0.00668933	4.77175e-5	0.0707069	0.00563886
chr1	155689082	155689162	229511	0	+	0.6125	(0.57,1]	chr1	26991	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	DAP3	ENSG00000132676.16	ENST00000461479.1:ENST00000471642.6:ENST00000471214.5:ENST00000479076.1:ENST00000343043.7:ENST00000368336.10:ENST00000535183.5:ENST00000421487.6:ENST00000496863.5:ENST00000465375.5:ENST00000462002.5:ENST00000470830.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	14	80	2	1.72382	2.164295	2.60477	0.00679121	9.19741e-5	0.0744032	0.0085351
chr2	169585597	169585696	906482	0	+	0.373737	(0.35,0.378]	chr2	100017	3	INTRON	INTRON	PPIG	ENSG00000138398.17	ENST00000678088.1:ENST00000677392.1:ENST00000433207.6:ENST00000679324.1:ENST00000414307.6:ENST00000676508.1:ENST00000260970.8:ENST00000678695.1:ENST00000409714.7:ENST00000530152.5:ENST00000677750.1:ENST00000676557.1:ENST00000678721.1:ENST00000462903.6:ENST00000676756.1:ENST00000679107.1:ENST00000678499.1:ENST00000678638.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	64	2	1.76773	2.16422	2.56071	0.0373863	0.00725312	0.155878	0.072984
chr6	20441376	20441476	2827844	0	+	0.35	(0.32,0.35]	chr6	265583	13	INTRON	INTRON	E2F3	ENSG00000112242.16	ENST00000346618.8:ENST00000535432.2	protein_coding	protein_coding	protein_coding	protein_coding	4	50	2	1.88255	2.164175	2.4458	0.0425977	0.0269187	0.148082	0.135288
chr2	188254931	188255031	1295070	0	-	0.29	(0.28,0.32]	chr2	135671	260	INTRON	INTRON	LINC01090	ENSG00000231689.3	ENST00000434418.2:ENST00000632331.1:ENST00000415357.1	lncRNA	lncRNA	lncRNA	lncRNA	5	73	2	2.06884	2.164115	2.25939	0.021772	0.0152581	0.11491	0.108569
chr1	75790784	75790861	144663	0	+	0.467532	(0.44,0.476]	chr1	16329	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RABGGTB	ENSG00000137955.16	ENST00000496055.5:ENST00000485459.5:ENST00000473406.5:ENST00000319942.8:ENST00000470201.5:ENST00000471759.5:ENST00000491266.5:ENST00000461653.5:ENST00000489450.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	14	144	2	1.69229	2.164045	2.6358	0.00753551	5.12141e-4	0.0748659	0.0203407
chr3	152315633	152315732	1535455	0	+	0.343434	(0.32,0.35]	chr3	159996	133	INTRON	INTRON	MBNL1	ENSG00000152601.18	ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000495875.6:ENST00000324210.10:ENST00000493459.5:ENST00000459747.1:ENST00000460591.5:ENST00000545754.5:ENST00000357472.7:ENST00000324196.9:ENST00000498502.5:ENST00000463374.5:ENST00000485910.5:ENST00000465907.6:ENST00000492948.5:ENST00000485509.5:ENST00000464596.5	protein_coding	protein_coding	protein_coding	protein_coding	15	136	2	1.09876	2.1640449999999998	3.22933	0.0519892	5.51504e-4	0.176748	0.0216014
chr1	1478025	1478113	1628	0	+	0.602273	(0.57,1]	chr1	371	1	EXON_MRNA	EXON_MRNA:INTRON	ATAD3B	ENSG00000160072.20	ENST00000673477.1:ENST00000308647.8:ENST00000472194.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	23	128	2	1.98234	2.164035	2.34573	5.69386e-4	6.0172e-5	0.0217398	0.00681398
chr16	2754045	2754145	6279830	0	+	0.39	(0.378,0.408]	chr16	600759	4	SS5_PROX	SS5_PROX:INTRON	SRRM2	ENSG00000167978.17	ENST00000576924.5:ENST00000301740.13:ENST00000575009.5:ENST00000576894.5:ENST00000575701.4:ENST00000630499.2:ENST00000576415.5:ENST00000571378.5:ENST00000574340.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	69	2	1.71619	2.164035	2.61188	0.0300647	0.0047055	0.129153	0.0631419
chr6	89834735	89834835	2916492	0	+	0.38	(0.378,0.408]	chr6	275600	30	INTRON	INTRON	CASP8AP2	ENSG00000118412.13	ENST00000552401.5:ENST00000419040.6:ENST00000547893.5:ENST00000237177.10:ENST00000551025.4:ENST00000548224.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	69	2	1.71619	2.164035	2.61188	0.0300647	0.0047055	0.129153	0.0631419
chrX	48913370	48913465	7815639	0	-	0.547368	(0.515,0.57]	chrX	796797	3	UTR3	UTR3:EXON_MRNA	PIM2	ENSG00000102096.9	ENST00000376509.4	protein_coding	protein_coding	protein_coding	protein_coding	12	114	2	2.09303	2.16402	2.23501	0.00230048	0.00132333	0.0439974	0.03326
chr7	100871177	100871277	3365783	0	+	0.5	(0.476,0.515]	chr7	315003	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TRIP6	ENSG00000087077.14	ENST00000200457.9:ENST00000476870.5:ENST00000619988.4:ENST00000429658.1:ENST00000488670.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	74	2	2.0107	2.16398	2.31726	0.015077	0.00572098	0.0994339	0.0681402
chr17	4319697	4319797	6711892	0	-	0.4	(0.378,0.408]	chr17	657718	122	INTRON	INTRON	UBE2G1	ENSG00000132388.13	ENST00000396981.7:ENST00000572484.5:ENST00000574633.5:ENST00000571980.1:ENST00000571953.5:ENST00000574059.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	82	2	2.13797	2.163955	2.18994	0.0124882	0.00448961	0.0923444	0.0612035
chr1	32794304	32794402	415929	0	-	0.346939	(0.32,0.35]	chr1	50188	27	INTRON	INTRON	YARS1	ENSG00000134684.13	ENST00000373477.9:ENST00000676297.1:ENST00000674654.1:ENST00000674629.1:ENST00000675785.2:ENST00000481895.6:ENST00000616261.2:ENST00000466052.1:ENST00000470377.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	136	2	1.5852	2.1639	2.7426	0.0351213	1.73451e-4	0.137535	0.0114162
chr5	88269965	88270065	2412072	0	+	0.26	[0,0.28]	chr5	232535	6	EXON_LNCRNA	EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TMEM161B-DT	ENSG00000247828.9	ENST00000504922.6:ENST00000661377.2:ENST00000658478.1:ENST00000501869.7:ENST00000688087.1:ENST00000513011.2:ENST00000654762.1:ENST00000666577.1:ENST00000664347.1:ENST00000658094.1:ENST00000661627.1:ENST00000663476.1:ENST00000669353.1:ENST00000688523.1:ENST00000664546.1:ENST00000688118.1:ENST00000663490.1:ENST00000656903.1:ENST00000689901.1:ENST00000653918.1:ENST00000668471.1:ENST00000659093.1:ENST00000504636.2:ENST00000666808.1:ENST00000671394.1:ENST00000662970.2:ENST00000661351.1:ENST00000688398.1:ENST00000660783.1:ENST00000670030.1:ENST00000664462.1:ENST00000659005.2:ENST00000655966.1:ENST00000670451.1:ENST00000670873.1:ENST00000501715.6:ENST00000657972.2:ENST00000658611.1:ENST00000692797.1:ENST00000504769.5:ENST00000653898.1:ENST00000667139.1:ENST00000684909.1:ENST00000656152.1:ENST00000659215.1:ENST00000669465.1:ENST00000659938.1:ENST00000507736.2:ENST00000667511.1:ENST00000665926.1:ENST00000513694.2:ENST00000693402.1:ENST00000496733.6:ENST00000510087.6:ENST00000506584.5:ENST00000669796.1:ENST00000512724.5:ENST00000668037.1:ENST00000657617.1:ENST00000686930.1:ENST00000667127.1	lncRNA	lncRNA	lncRNA	lncRNA	6	96	2	1.95835	2.16388	2.36941	0.0178556	0.014237	0.106151	0.103751
chr1	207347561	207347661	303536	0	+	0.36	(0.35,0.378]	chr1	34930	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	CD55	ENSG00000196352.18	ENST00000695822.1:ENST00000695823.1:ENST00000695826.1:ENST00000695825.1:ENST00000695827.1:ENST00000645323.1:ENST00000391921.9:ENST00000367064.9:ENST00000314754.12:ENST00000644836.1:ENST00000476590.1:ENST00000465534.5:ENST00000618707.2:ENST00000635614.2:ENST00000695831.1:ENST00000634386.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	72	2	1.44934	2.1638450000000002	2.87835	0.0658369	0.00160563	0.181518	0.0367961
chr10	73086885	73086985	4647747	0	-	0.33	(0.32,0.35]	chr10	427557	44	INTRON	INTRON	P4HA1	ENSG00000122884.13	ENST00000394890.7:ENST00000307116.6:ENST00000373008.6:ENST00000440381.5:ENST00000263556.3	protein_coding	protein_coding	protein_coding	protein_coding	5	57	2	1.63843	2.1638200000000003	2.68921	0.0360919	0.0230336	0.152563	0.118056
chr2	55041816	55041916	1121323	0	-	0.23	[0,0.28]	chr2	120163	132	INTRON	INTRON	RTN4	ENSG00000115310.19	ENST00000404909.5:ENST00000394611.6:ENST00000317610.11:ENST00000357732.8:ENST00000337526.11:ENST00000357376.7:ENST00000405240.5:ENST00000438462.1:ENST00000427710.5	protein_coding	protein_coding	protein_coding	protein_coding	7	91	2	1.68446	2.1637750000000002	2.64309	0.0308646	0.0190521	0.13151	0.11904000000000001
chr7	43650912	43651012	3525587	0	-	0.6	(0.57,1]	chr7	328754	2	SS3_PROX	SS3_PROX:INTRON	COA1	ENSG00000106603.20	ENST00000415076.6:ENST00000446330.6:ENST00000446564.5:ENST00000438444.5:ENST00000223336.11:ENST00000310564.10:ENST00000415798.5:ENST00000431651.5:ENST00000451651.5:ENST00000418140.5:ENST00000448704.5:ENST00000470156.1:ENST00000457939.1:ENST00000420441.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	23	2	1.52865	2.16377	2.79889	0.0730445	0.0110274	0.189414	0.0927187
chr18	9569164	9569262	6945849	0	-	0.336735	(0.32,0.35]	chr18	686979	53	INTRON	INTRON	PPP4R1	ENSG00000154845.16	ENST00000400555.7:ENST00000400556.8:ENST00000285124.12:ENST00000578557.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	69	2	1.29156	2.1637649999999997	3.03597	0.060443	0.00832487	0.191687	0.0774402
chr16	85567851	85567951	6415510	0	+	0.44	(0.408,0.44]	chr16	615470	111	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	17	185	2	1.82116	2.16375	2.50634	0.0043429	1.75878e-4	0.0580401	0.011551
chr2	159765457	159765552	900024	0	+	0.357895	(0.35,0.378]	chr2	99576	4	INTRON	INTRON	MARCHF7	ENSG00000136536.15	ENST00000539065.5:ENST00000259050.8:ENST00000409175.6:ENST00000409591.5:ENST00000420397.1:ENST00000478396.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	120	2	2.00273	2.163745	2.32476	0.00416915	0.00343673	0.0591344	0.0517761
chr16	84753139	84753238	6410445	0	+	0.414141	(0.408,0.44]	chr16	615303	71	INTRON	INTRON	USP10	ENSG00000103194.16	ENST00000540269.6:ENST00000563892.5:ENST00000219473.12:ENST00000570191.5:ENST00000563048.5:ENST00000569038.5:ENST00000570053.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	101	2	2.11768	2.163735	2.20979	0.00496289	0.00352982	0.0615009	0.0546236
chr6	157025842	157025941	3009652	0	+	0.353535	(0.35,0.378]	chr6	281133	12	INTRON	INTRON	ARID1B	ENSG00000049618.24	ENST00000346085.10:ENST00000636930.2:ENST00000647938.1:ENST00000350026.10:ENST00000674298.1:ENST00000674190.1:ENST00000414678.7:ENST00000319584.11:ENST00000452544.2:ENST00000637887.1:ENST00000635849.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	72	2	1.60653	2.16373	2.72093	0.0427748	0.00314173	0.148082	0.0514466
chr11	68520926	68521023	4817938	0	+	0.505155	(0.476,0.515]	chr11	448925	9	INTRON	INTRON	PPP6R3	ENSG00000110075.15	ENST00000530427.5:ENST00000528635.5:ENST00000529907.5:ENST00000533127.5:ENST00000534534.5:ENST00000529344.5:ENST00000524845.5:ENST00000393800.7:ENST00000265637.8:ENST00000524904.5:ENST00000393801.7:ENST00000265636.9:ENST00000529710.5:ENST00000527403.6:ENST00000525050.5:ENST00000527069.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	65	2	1.87147	2.163725	2.45598	0.0157856	0.00945755	0.109464	0.0817766
chr6	7215499	7215599	2799450	0	+	0.49	(0.476,0.515]	chr6	263771	39	EXON_MRNA	EXON_MRNA:INTRON	RREB1	ENSG00000124782.21	ENST00000379933.7:ENST00000379938.7:ENST00000349384.10:ENST00000334984.10:ENST00000475946.5:ENST00000483150.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	65	2	1.87147	2.163725	2.45598	0.0157856	0.00945755	0.109464	0.0817766
chr2	61493146	61493239	1130750	0	-	0.483871	(0.476,0.515]	chr2	121561	2	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	XPO1	ENSG00000082898.19	ENST00000677110.1:ENST00000678113.1:ENST00000676553.1:ENST00000677556.1:ENST00000677814.1:ENST00000676771.1:ENST00000677803.1:ENST00000677239.1:ENST00000678790.1:ENST00000677928.1:ENST00000678182.1:ENST00000677150.1:ENST00000678172.1:ENST00000678360.1:ENST00000678081.1:ENST00000676889.1:ENST00000676783.1:ENST00000679035.1:ENST00000677422.1:ENST00000677417.1:ENST00000677813.1:ENST00000676999.1:ENST00000676667.1:ENST00000678263.1:ENST00000678877.1:ENST00000677933.1:ENST00000680228.1:ENST00000677289.1:ENST00000677190.1:ENST00000481073.6:ENST00000677476.1:ENST00000469337.2:ENST00000401558.7:ENST00000428210.5:ENST00000677290.1:ENST00000677850.1:ENST00000676778.1:ENST00000451765.6:ENST00000676789.1:ENST00000678741.1:ENST00000404992.6:ENST00000406957.5:ENST00000677157.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	87	2	1.94611	2.1637	2.38129	0.0075261	0.00474233	0.0773151	0.0600445
chr5	139657057	139657157	2501286	0	+	0.49	(0.476,0.515]	chr5	239074	55	INTRON	INTRON	CXXC5	ENSG00000171604.12	ENST00000502295.1:ENST00000504944.1:ENST00000302517.8:ENST00000507139.5:ENST00000504844.1:ENST00000502336.5:ENST00000520967.1:ENST00000511048.1:ENST00000512816.1	protein_coding	protein_coding	protein_coding	protein_coding	6	65	2	1.82798	2.163695	2.49941	0.0184548	0.00811651	0.116598	0.0766625
chr11	32896329	32896428	4764746	0	+	0.373737	(0.35,0.378]	chr11	440609	26	INTRON	INTRON	QSER1	ENSG00000060749.16	ENST00000650167.2:ENST00000399302.7:ENST00000527250.5	protein_coding	protein_coding	protein_coding	protein_coding	6	76	2	2.15877	2.163685	2.1686	0.0116706	0.0102036	0.0891208	0.089002
chr1	16322021	16322121	382315	0	-	0.43	(0.408,0.44]	chr1	44888	62	INTRON	INTRON	FBXO42	ENSG00000037637.11	ENST00000375592.8	protein_coding	protein_coding	protein_coding	protein_coding	4	48	2	1.88062	2.1636800000000003	2.44674	0.0534548	0.00868283	0.162935	0.0842798
chr4	174317677	174317776	2082933	0	+	0.393939	(0.378,0.408]	chr4	205864	4	UTR3	UTR3:EXON_MRNA:INTRON	CEP44	ENSG00000164118.13	ENST00000457424.6:ENST00000396791.7:ENST00000503780.6:ENST00000426172.3:ENST00000296519.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	95	2	1.37293	2.16366	2.95439	0.0317131	0.00148165	0.144715	0.0349546
chr22	21692460	21692553	7482736	0	+	0.301075	(0.28,0.32]	chr22	763402	6	INTRON	INTRON	PPIL2	ENSG00000100023.20	ENST00000679795.1:ENST00000679540.1:ENST00000679580.1:ENST00000681286.1:ENST00000680061.1:ENST00000681338.1:ENST00000681956.1:ENST00000679827.1:ENST00000679534.1:ENST00000679479.1:ENST00000680393.1:ENST00000335025.12:ENST00000498109.2:ENST00000398831.8:ENST00000681394.1:ENST00000679477.1:ENST00000626352.2:ENST00000417788.5:ENST00000681791.1:ENST00000679692.1:ENST00000680962.1:ENST00000680094.1:ENST00000680434.1:ENST00000680109.1:ENST00000406385.1:ENST00000681137.1:ENST00000680860.1:ENST00000680183.1:ENST00000446951.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	46	2	1.86684	2.16351	2.46018	0.0605813	0.0375904	0.171122	0.156054
chr16	21868097	21868197	6461924	0	-	0.55	(0.515,0.57]	chr16	623467	19	INTRON	INTRON	NPIPB4	ENSG00000185864.18	ENST00000543449.1:ENST00000538859.1	protein_coding	processed_transcript	protein_coding	processed_transcript	6	56	2	1.7407	2.1634700000000002	2.58624	0.0242347	0.00526399	0.130613	0.0633874
chr4	128111683	128111783	2043108	0	+	0.49	(0.476,0.515]	chr4	202892	29	INTRON	INTRON	LARP1B	ENSG00000138709.19	ENST00000512292.5:ENST00000326639.11:ENST00000508819.5:ENST00000649983.1:ENST00000507377.1	protein_coding	protein_coding	protein_coding	protein_coding	5	57	2	2.16306	2.163415	2.16377	0.0243026	0.00973468	0.12011	0.0877284
chr8	8881778	8881878	3907492	0	-	0.43	(0.408,0.44]	chr8	358045	219	INTRON	INTRON	MFHAS1	ENSG00000147324.11	ENST00000276282.7	protein_coding	protein_coding	protein_coding	protein_coding	6	70	2	2.13157	2.163405	2.19524	0.0109031	0.00990486	0.0923273	0.0838372
chr8	140529545	140529645	4075476	0	-	0.37	(0.35,0.378]	chr8	370170	95	UTR3	UTR3:EXON_MRNA	AGO2	ENSG00000123908.12	ENST00000220592.10	protein_coding	protein_coding	protein_coding	protein_coding	8	99	2	1.63783	2.163385	2.68894	0.0250627	0.00152848	0.133086	0.0353936
chr14	21241056	21241156	5834882	0	-	0.52	(0.515,0.57]	chr14	554459	42	INTRON	INTRON	HNRNPC	ENSG00000092199.19	ENST00000336053.10:ENST00000553300.6:ENST00000554969.5:ENST00000556142.5:ENST00000554455.5:ENST00000430246.6:ENST00000553753.5:ENST00000555309.5:ENST00000555914.5:ENST00000557442.5:ENST00000556628.5:ENST00000556513.5:ENST00000555883.5:ENST00000557201.5:ENST00000556897.5:ENST00000420743.6:ENST00000554539.5:ENST00000554383.5:ENST00000555215.5:ENST00000555137.5:ENST00000554891.5:ENST00000556226.5:ENST00000555176.5:ENST00000553614.5:ENST00000557336.1:ENST00000557768.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	49	2	1.75372	2.16335	2.57298	0.0386904	0.00506495	0.14279	0.0646039
chr5	146141458	146141558	2746975	0	-	0.41	(0.408,0.44]	chr5	258805	13	EXON_MRNA	EXON_MRNA:INTRON	LARS1	ENSG00000133706.19	ENST00000674174.1:ENST00000674170.1:ENST00000674479.1:ENST00000674309.1:ENST00000674218.1:ENST00000674467.1:ENST00000674290.1:ENST00000674447.1:ENST00000674270.1:ENST00000674383.1:ENST00000674191.1:ENST00000674158.1:ENST00000506231.6:ENST00000674471.1:ENST00000674181.1:ENST00000394434.7:ENST00000674398.1:ENST00000674277.1:ENST00000274562.13:ENST00000510191.5:ENST00000504323.6:ENST00000674310.1:ENST00000512412.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	91	2	1.87932	2.16331	2.4473	0.0172104	0.0013419	0.104099	0.0336974
chr3	5166509	5166608	1354018	0	+	0.525253	(0.515,0.57]	chr3	142361	376	INTRON	INTRON	ARL8B	ENSG00000134108.14	ENST00000429403.5:ENST00000256496.8:ENST00000455168.5:ENST00000444332.1:ENST00000419534.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	41	2	1.8707	2.163275	2.45585	0.0523213	0.00797827	0.160182	0.0798772
chr8	61667063	61667158	3958628	0	-	0.284211	(0.28,0.32]	chr8	363153	11	INTRON	INTRON	ASPH	ENSG00000198363.18	ENST00000379454.9:ENST00000541428.5:ENST00000522349.5:ENST00000523927.5:ENST00000445642.6:ENST00000356457.9:ENST00000519234.5:ENST00000518068.5:ENST00000517903.5:ENST00000517847.6:ENST00000522835.5:ENST00000518306.5:ENST00000517856.5:ENST00000517928.1:ENST00000389204.8:ENST00000522603.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	54	2	1.81152	2.1632	2.51488	0.0380957	0.034446	0.147767	0.141678
chr17	40240511	40240611	6609676	0	+	0.31	(0.28,0.32]	chr17	643734	196	INTRON	INTRON	WIPF2	ENSG00000171475.14	ENST00000323571.9:ENST00000583268.1:ENST00000494757.5:ENST00000582781.5:ENST00000585043.5:ENST00000394103.7:ENST00000583130.5:ENST00000584296.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	45	2	2.13651	2.1631299999999998	2.18975	0.0776042	0.0265696	0.196285	0.134088
chr10	68422696	68422793	4639262	0	-	0.505155	(0.476,0.515]	chr10	426657	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	DNA2	ENSG00000138346.15	ENST00000358410.8:ENST00000551118.6:ENST00000399179.6:ENST00000399180.3:ENST00000440722.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	91	2	1.52755	2.163055	2.79856	0.0355377	7.60949e-4	0.151404	0.0252625
chr10	7755026	7755121	4552991	0	-	0.368421	(0.35,0.378]	chr10	420278	11	UTR3	UTR3:EXON_MRNA:INTRON	KIN	ENSG00000151657.12	ENST00000379562.9:ENST00000498098.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	39	2	1.75561	2.16305	2.57049	0.0739399	0.0262669	0.190914	0.133676
chr12	69255866	69255959	5163668	0	+	0.376344	(0.35,0.378]	chr12	489012	9	UTR3	UTR3:EXON_MRNA:INTRON	CPSF6	ENSG00000111605.18	ENST00000435070.7:ENST00000650046.1:ENST00000456847.7:ENST00000266679.8:ENST00000551516.1:ENST00000547486.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	39	2	1.75561	2.16305	2.57049	0.0739399	0.0262669	0.190914	0.133676
chr9	130756854	130756954	4214293	0	+	0.52	(0.515,0.57]	chr9	386427	420	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000393293.4	protein_coding	protein_coding	protein_coding	protein_coding	8	78	2	2.03368	2.162955	2.29223	0.00803127	0.00290031	0.0803474	0.047789
chr7	152136640	152136735	3678210	0	-	0.442105	(0.44,0.476]	chr7	341365	19	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	KMT2C	ENSG00000055609.21	ENST00000360104.8:ENST00000262189.11:ENST00000418061.2:ENST00000680877.1:ENST00000424877.6:ENST00000679560.1:ENST00000682040.1:ENST00000683640.1:ENST00000682116.1:ENST00000683120.1:ENST00000682824.1:ENST00000681923.1:ENST00000679393.1:ENST00000683200.1:ENST00000684768.1:ENST00000680029.1:ENST00000683337.1:ENST00000682629.1:ENST00000683178.1:ENST00000682137.1:ENST00000683502.1:ENST00000684261.1:ENST00000684685.1:ENST00000682283.1:ENST00000473186.5:ENST00000684649.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	13	143	2	2.13109	2.16272	2.19435	0.00205478	0.00144871	0.0409714	0.0349208
chr9	133370241	133370341	4370390	0	-	0.48	(0.476,0.515]	chr9	402198	23	INTRON	INTRON	SURF4	ENSG00000148248.14	ENST00000545297.5:ENST00000613129.4:ENST00000618229.4:ENST00000371989.8:ENST00000485435.6:ENST00000467910.5:ENST00000371991.3:ENST00000371982.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	15	164	2	2.07463	2.162605	2.25058	0.00142485	0.00105914	0.0347137	0.0297867
chr1	32658469	32658568	65903	0	+	0.323232	(0.32,0.35]	chr1	8422	5	INTRON	INTRON	RBBP4	ENSG00000162521.19	ENST00000414241.7:ENST00000527118.5:ENST00000373493.10:ENST00000401893.7:ENST00000524393.5:ENST00000492348.6:ENST00000526193.5:ENST00000373485.5:ENST00000477563.6:ENST00000458695.6:ENST00000445722.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	104	2	1.43561	2.16259	2.88957	0.0543363	4.39424e-4	0.164972	0.0189185
chr1	29174984	29175083	410375	0	-	0.333333	(0.32,0.35]	chr1	49421	16	INTRON	INTRON	SRSF4	ENSG00000116350.18	ENST00000373795.7:ENST00000691479.1:ENST00000466448.4:ENST00000605204.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	17	201	2	1.65376	2.16248	2.6712	0.00617996	4.68283e-4	0.0713552	0.0200405
chr4	1997089	1997188	2095931	0	-	0.292929	(0.28,0.32]	chr4	207403	46	INTRON	INTRON	NELFA	ENSG00000185049.16	ENST00000542778.5:ENST00000382882.9:ENST00000333877.8:ENST00000431323.6:ENST00000455762.5:ENST00000421397.5:ENST00000411649.3:ENST00000443203.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	141	2	1.6762	2.16247	2.64874	0.0113403	0.00235868	0.0950029	0.0436827
chr12	132826237	132826328	5450198	0	-	0.483516	(0.476,0.515]	chr12	522119	4	EXON_LNCRNA	EXON_LNCRNA:INTRON	GOLGA3:CHFR	ENSG00000090615.16:ENSG00000072609.18	ENST00000204726.9:ENST00000450791.8:ENST00000688114.1:ENST00000691696.1:ENST00000691636.1:ENST00000690897.1:ENST00000456883.7:ENST00000545875.4:ENST00000688251.1:ENST00000686751.1:ENST00000685580.1:ENST00000687165.1:ENST00000692384.1:ENST00000685120.1:ENST00000689813.1:ENST00000693112.1:ENST00000685450.1:ENST00000534967.2:ENST00000537317.2:ENST00000690178.1:ENST00000541341.5:ENST00000692289.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	65	2	1.91368	2.162445	2.41121	0.0135123	0.0110342	0.101363	0.0873897
chr3	69045874	69045971	1734655	0	-	0.484536	(0.476,0.515]	chr3	176796	9	INTRON	INTRON	TMF1	ENSG00000144747.17	ENST00000398559.7:ENST00000646304.1:ENST00000646708.1:ENST00000488010.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	65	2	1.91368	2.162445	2.41121	0.0135123	0.0110342	0.101363	0.0873897
chr11	2957322	2957418	4891633	0	-	0.34375	(0.32,0.35]	chr11	458297	12	INTRON	INTRON	NAP1L4	ENSG00000205531.13	ENST00000620138.4:ENST00000380542.9:ENST00000526115.5:ENST00000492685.5:ENST00000528363.5:ENST00000483643.7:ENST00000528261.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	81	2	1.8526	2.1624	2.4722	0.0332438	0.00307237	0.134145	0.0509893
chr15	28670767	28670863	5988759	0	+	0.354167	(0.35,0.378]	chr15	569388	21	INTRON	INTRON	HERC2P9	ENSG00000206149.11	ENST00000529624.5:ENST00000530420.5:ENST00000528584.5	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript:transcribed_unprocessed_pseudogene	5	63	2	1.56287	2.162395	2.76192	0.0697648	0.00265021	0.184298	0.0474328
chr5	119133982	119134080	2460405	0	+	0.459184	(0.44,0.476]	chr5	235650	6	CDS	CDS:EXON_MRNA	DMXL1	ENSG00000172869.15	ENST00000539542.6:ENST00000311085.8	protein_coding	protein_coding	protein_coding	protein_coding	7	79	2	1.93713	2.16238	2.38763	0.0138947	0.00394089	0.0955491	0.0573041
chr16	16605579	16605679	6311918	0	+	0.47	(0.44,0.476]	chr16	604098	1056	INTRON	INTRON	ENSG00000260126	ENSG00000260126.2	ENST00000567465.2	lncRNA	lncRNA	lncRNA	lncRNA	12	126	2	1.8237	2.162375	2.50105	0.00500364	0.00240161	0.0617881	0.0452061
chr6	73516533	73516631	3139407	0	-	0.367347	(0.35,0.378]	chr6	292523	9	UTR3	UTR3:EXON_MRNA:INTRON	EEF1A1	ENSG00000156508.19	ENST00000676547.1:ENST00000309268.11:ENST00000610520.5:ENST00000316292.13:ENST00000615060.5	protein_coding	protein_coding	protein_coding	protein_coding	11	162	2	1.7339	2.16226	2.59062	0.0260366	2.40822e-4	0.133676	0.014263
chr11	65439249	65439348	4805935	0	+	0.333333	(0.32,0.35]	chr11	446554	166	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	35	437	2	2.09465	2.162245	2.22984	4.76213e-4	2.36602e-4	0.0202268	0.0136195
chr15	88899555	88899632	6256692	0	-	0.649351	(0.57,1]	chr15	596856	1	SSB_ADJ	SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MFGE8	ENSG00000140545.16	ENST00000268150.13:ENST00000558018.5:ENST00000558029.6:ENST00000695566.1:ENST00000268151.11:ENST00000566497.5:ENST00000695774.1:ENST00000560937.1:ENST00000542878.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	23	2	1.79063	2.16223	2.53383	0.0356001	0.02547	0.15159	0.12011
chr22	18575590	18575689	7551109	0	-	0.585859	(0.57,1]	chr22	771833	10	INTRON	INTRON	PI4KAP1	ENSG00000274602.5	ENST00000611748.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	4	23	2	1.79063	2.16223	2.53383	0.0356001	0.02547	0.15159	0.12011
chr8	9619872	9619972	3700142	0	+	0.32	(0.28,0.32]	chr8	343193	38	INTRON	INTRON	TNKS	ENSG00000173273.16	ENST00000310430.11:ENST00000520408.5:ENST00000518281.5:ENST00000518027.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	15	212	2	2.00159	2.16223	2.32287	0.00535161	5.51525e-4	0.0642754	0.0213489
chr1	22066096	22066193	42338	0	+	0.329897	(0.32,0.35]	chr1	5081	9	UTR5	UTR5:EXON_MRNA:INTRON	ENSG00000289694:CDC42	ENSG00000289694.1:ENSG00000070831.18	ENST00000695855.1:ENST00000695856.1:ENST00000344548.8:ENST00000400259.5:ENST00000667384.2:ENST00000411827.2:ENST00000695858.1:ENST00000695857.1:ENST00000315554.14:ENST00000695859.1:ENST00000498236.1:ENST00000656825.1:ENST00000651171.1:ENST00000652582.1:ENST00000695860.1:ENST00000695796.1:ENST00000695797.1:ENST00000662562.2:ENST00000695798.1:ENST00000695799.1:ENST00000695800.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	41	2	2.01768	2.162205	2.30673	0.0584434	0.0361337	0.167723	0.152563
chr1	25450613	25450711	48146	0	+	0.326531	(0.32,0.35]	chr1	5931	13	INTRON	INTRON	MACO1	ENSG00000204178.11	ENST00000399766.7:ENST00000374343.5:ENST00000647928.1:ENST00000470035.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	41	2	2.01768	2.162205	2.30673	0.0584434	0.0361337	0.167723	0.152563
chr2	121578689	121578789	1221681	0	-	0.35	(0.32,0.35]	chr2	130051	480	INTRON	INTRON	CLASP1	ENSG00000074054.20	ENST00000263710.8:ENST00000397587.7:ENST00000541377.5:ENST00000409078.8:ENST00000455322.6	protein_coding	protein_coding	protein_coding	protein_coding	3	41	2	2.01768	2.162205	2.30673	0.0584434	0.0361337	0.167723	0.152563
chr5	87394818	87394902	2668735	0	-	0.333333	(0.32,0.35]	chr5	252562	5	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CCNH	ENSG00000134480.16	ENST00000645953.1:ENST00000646883.1:ENST00000505587.5:ENST00000510921.5:ENST00000508855.5:ENST00000256897.9:ENST00000504878.1:ENST00000511207.5:ENST00000504115.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	41	2	2.01768	2.162205	2.30673	0.0584434	0.0361337	0.167723	0.152563
chr6	149750864	149750963	2996045	0	+	0.323232	(0.32,0.35]	chr6	280342	2	INTRON	INTRON	PCMT1	ENSG00000120265.19	ENST00000367384.7:ENST00000367378.6:ENST00000484601.6:ENST00000367380.9:ENST00000544496.5:ENST00000649295.1:ENST00000494411.6:ENST00000460828.6:ENST00000464889.7:ENST00000486585.2:ENST00000495487.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	41	2	2.01768	2.162205	2.30673	0.0584434	0.0361337	0.167723	0.152563
chr19	2341711	2341810	6997297	0	+	0.383838	(0.378,0.408]	chr19	693727	8	UTR3	UTR3:EXON_MRNA:INTRON	SPPL2B	ENSG00000005206.17	ENST00000621568.4:ENST00000613503.5:ENST00000610743.4:ENST00000618220.4:ENST00000612623.1:ENST00000614784.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	50	2	1.76032	2.1622000000000003	2.56408	0.0721577	0.00566993	0.187433	0.0678837
chr4	78802280	78802380	1981644	0	+	0.34	(0.32,0.35]	chr4	198463	252	INTRON	INTRON	BMP2K	ENSG00000138756.19	ENST00000389010.7:ENST00000502613.3:ENST00000502871.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	118	2	2.02647	2.162195	2.29792	0.0116933	0.00175304	0.0892647	0.0387108
chr9	92286236	92286336	4287270	0	-	0.6	(0.57,1]	chr9	394250	5	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	IARS1	ENSG00000196305.19	ENST00000375643.7:ENST00000443024.7:ENST00000447699.7:ENST00000683537.1:ENST00000684726.1:ENST00000683192.1:ENST00000683565.1:ENST00000682756.1:ENST00000684542.1:ENST00000683793.1:ENST00000683817.1:ENST00000682141.1:ENST00000682893.1:ENST00000684557.1:ENST00000498025.2:ENST00000682156.1:ENST00000627121.3:ENST00000683469.1:ENST00000683495.1:ENST00000682578.1:ENST00000682533.1:ENST00000472894.2:ENST00000684757.1:ENST00000684445.1:ENST00000683376.1:ENST00000683679.1:ENST00000683119.1:ENST00000490438.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	42	2	1.92756	2.16217	2.39678	0.0220439	0.00143653	0.115395	0.0347139
chr1	6583087	6583183	5343	0	+	0.479167	(0.476,0.515]	chr1	1034	4	INTRON	INTRON	ZBTB48	ENSG00000204859.13	ENST00000377674.9:ENST00000488936.1	protein_coding	protein_coding	protein_coding	protein_coding	3	35	2	1.91817	2.162125	2.40608	0.0459211	0.0425709	0.164984	0.148082
chr12	1534443	1534543	5062999	0	+	0.5	(0.476,0.515]	chr12	477805	31	INTRON	INTRON	WNT5B	ENSG00000111186.13	ENST00000539198.5:ENST00000545811.5	protein_coding	protein_coding	protein_coding	protein_coding	3	35	2	1.91817	2.162125	2.40608	0.0459211	0.0425709	0.164984	0.148082
chr16	24045337	24045437	6325859	0	+	0.51	(0.476,0.515]	chr16	605723	94	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000498739.1:ENST00000647422.1:ENST00000486868.1:ENST00000482000.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	35	2	1.91817	2.162125	2.40608	0.0459211	0.0425709	0.164984	0.148082
chr20	35410648	35410747	7335198	0	-	0.484848	(0.476,0.515]	chr20	747206	6	INTRON	INTRON	UQCC1	ENSG00000101019.22	ENST00000374380.6:ENST00000374394.7:ENST00000374384.6:ENST00000359226.6:ENST00000349714.9:ENST00000457259.5:ENST00000374385.10:ENST00000453855.5:ENST00000424405.5:ENST00000443429.5:ENST00000438533.5:ENST00000397554.5:ENST00000491125.5:ENST00000491040.5:ENST00000397553.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	35	2	1.91817	2.162125	2.40608	0.0459211	0.0425709	0.164984	0.148082
chr6	136768834	136768934	3235405	0	-	0.5	(0.476,0.515]	chr6	300700	479	INTRON	INTRON	MAP3K5	ENSG00000197442.10	ENST00000359015.5	protein_coding	protein_coding	protein_coding	protein_coding	3	35	2	1.91817	2.162125	2.40608	0.0459211	0.0425709	0.164984	0.148082
chr7	76466904	76467004	3339942	0	+	0.5	(0.476,0.515]	chr7	311070	28	INTRON	INTRON	DTX2	ENSG00000091073.20	ENST00000425780.5:ENST00000451769.5:ENST00000456590.5:ENST00000324432.9:ENST00000430490.7:ENST00000446600.5:ENST00000457529.5:ENST00000492339.5:ENST00000413936.6:ENST00000423646.5:ENST00000438930.5:ENST00000442516.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	35	2	1.91817	2.162125	2.40608	0.0459211	0.0425709	0.164984	0.148082
chr5	53957617	53957717	2617380	0	-	0.41	(0.408,0.44]	chr5	248835	456	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	101	2	1.90614	2.16205	2.41796	0.0103993	0.0015483	0.0854042	0.0363194
chr14	103471398	103471498	5826519	0	+	0.5	(0.476,0.515]	chr14	552901	22	INTRON	INTRON	MARK3	ENSG00000075413.19	ENST00000678179.1:ENST00000676838.1:ENST00000677348.1:ENST00000677404.1:ENST00000676694.1:ENST00000676938.1:ENST00000678619.1:ENST00000676897.1:ENST00000677214.1:ENST00000677942.1:ENST00000676830.1:ENST00000678999.1:ENST00000677228.1:ENST00000556744.2:ENST00000677104.1:ENST00000679330.1:ENST00000560417.6:ENST00000440884.7:ENST00000676475.1:ENST00000677035.1:ENST00000678022.1:ENST00000677560.1:ENST00000561314.6:ENST00000429436.7:ENST00000677118.1:ENST00000676564.1:ENST00000678169.1:ENST00000678175.1:ENST00000678897.1:ENST00000678278.1:ENST00000676645.1:ENST00000677829.1:ENST00000678302.1:ENST00000677133.1:ENST00000678207.1:ENST00000677360.1:ENST00000676905.1:ENST00000678343.1:ENST00000677347.1:ENST00000678071.1:ENST00000677432.1:ENST00000678237.1:ENST00000677604.1:ENST00000676518.1:ENST00000677051.1:ENST00000677857.1:ENST00000677869.1:ENST00000416682.6:ENST00000303622.13:ENST00000216288.11:ENST00000679105.1:ENST00000553942.5:ENST00000335102.9:ENST00000678091.1:ENST00000561071.5:ENST00000676745.1:ENST00000554627.5:ENST00000559274.1:ENST00000677410.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	35	2	1.8388	2.162035	2.48527	0.0564473	0.03496	0.184423	0.13747500000000001
chr15	56980061	56980161	6032726	0	+	0.48	(0.476,0.515]	chr15	574663	586	INTRON	INTRON	TCF12	ENSG00000140262.18	ENST00000438423.6:ENST00000267811.9:ENST00000333725.10:ENST00000560190.5:ENST00000559609.5:ENST00000558908.5:ENST00000557843.5:ENST00000557947.5:ENST00000561152.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	35	2	1.8388	2.162035	2.48527	0.0564473	0.03496	0.184423	0.13747500000000001
chr2	171928636	171928736	918422	0	+	0.51	(0.476,0.515]	chr2	101183	26	INTRON	INTRON	HAT1	ENSG00000128708.13	ENST00000412731.5:ENST00000264108.5:ENST00000457761.6:ENST00000494601.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	35	2	1.8388	2.162035	2.48527	0.0564473	0.03496	0.184423	0.13747500000000001
chr1	44740722	44740812	92313	0	+	0.333333	(0.32,0.35]	chr1	12247	3	SS3_PROX	SS3_PROX:INTRON	KIF2C	ENSG00000142945.13	ENST00000452259.5:ENST00000493027.5:ENST00000372224.9:ENST00000455186.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	67	2	2.1362	2.161985	2.18777	0.0291083	0.00951422	0.128029	0.0863913
chrX	18348892	18348992	7771001	0	-	0.33	(0.32,0.35]	chrX	794213	144	INTRON	INTRON	SCML2	ENSG00000102098.19	ENST00000251900.9	protein_coding	protein_coding	protein_coding	protein_coding	3	41	2	1.81328	2.161945	2.51061	0.0615716	0.0364463	0.193423	0.138959
chr5	127532057	127532154	2479943	0	+	0.340206	(0.32,0.35]	chr5	236798	13	INTRON	INTRON	PRRC1	ENSG00000164244.21	ENST00000296666.13:ENST00000442138.6:ENST00000512635.2	protein_coding	protein_coding	protein_coding	protein_coding	6	77	2	1.46414	2.16194	2.85974	0.065059	0.00186579	0.179599	0.0399675
chr17	31134002	31134102	6591524	0	+	0.37	(0.35,0.378]	chr17	641057	51	INTRON	INTRON	NF1	ENSG00000196712.20	ENST00000696138.1:ENST00000356175.7:ENST00000487476.5:ENST00000691014.1:ENST00000358273.9:ENST00000431387.8:ENST00000579081.5:ENST00000489712.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	52	2	2.09331	2.16187	2.23043	0.0315717	0.0187487	0.13151	0.117523
chr5	127021127	127021227	2714464	0	-	0.37	(0.35,0.378]	chr5	255278	744	INTRON	INTRON	MARCHF3	ENSG00000173926.6	ENST00000308660.6:ENST00000502289.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	52	2	2.09331	2.16187	2.23043	0.0315717	0.0187487	0.13151	0.117523
chrX	24726639	24726737	7632023	0	+	0.377551	(0.35,0.378]	chrX	781649	7	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	POLA1	ENSG00000101868.13	ENST00000672178.1:ENST00000379068.8:ENST00000677890.1:ENST00000379059.7:ENST00000611764.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	52	2	2.09331	2.16187	2.23043	0.0315717	0.0187487	0.13151	0.117523
chr1	16324615	16324715	382341	0	-	0.5	(0.476,0.515]	chr1	44888	88	INTRON	INTRON	FBXO42	ENSG00000037637.11	ENST00000375592.8	protein_coding	protein_coding	protein_coding	protein_coding	7	61	2	1.55902	2.16181	2.7646	0.0242957	0.0162075	0.130919	0.101453
chr7	140378713	140378813	3661081	0	-	0.47	(0.44,0.476]	chr7	339846	1	SS5_PROX	SS5_PROX:INTRON	SLC37A3	ENSG00000157800.18	ENST00000477571.5:ENST00000326232.14:ENST00000447932.6:ENST00000340308.7:ENST00000460560.5:ENST00000490760.5:ENST00000464865.5:ENST00000469193.5:ENST00000461089.5:ENST00000462881.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	66	2	1.38039	2.1618	2.94321	0.0762718	0.00111162	0.195539	0.0305384
chr7	155304295	155304395	3451830	0	+	0.41	(0.408,0.44]	chr7	322632	4	SS5_PROX	SS5_PROX:INTRON	INSIG1	ENSG00000186480.13	ENST00000344756.8:ENST00000340368.9:ENST00000342407.5:ENST00000476756.1	protein_coding	protein_coding	protein_coding	protein_coding	6	72	2	1.93002	2.161755	2.39349	0.022095	0.00467273	0.123903	0.0600108
chr17	16054977	16055076	6733574	0	-	0.40404	(0.378,0.408]	chr17	660513	56	INTRON	INTRON	NCOR1	ENSG00000141027.22	ENST00000268712.8:ENST00000395851.5:ENST00000470782.5:ENST00000464381.5:ENST00000395849.6:ENST00000580554.1:ENST00000579606.1:ENST00000458113.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	50	2	2.11103	2.161705	2.21238	0.0266911	0.0218124	0.134419	0.11491
chr19	329863	329963	7109463	0	-	0.4	(0.378,0.408]	chr19	713810	2	SS5_PROX	SS5_PROX:INTRON	MIER2	ENSG00000105556.12	ENST00000264819.7:ENST00000635755.1:ENST00000586994.7:ENST00000621180.4:ENST00000592722.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	44	2	1.72045	2.161705	2.60296	0.0424671	0.0267851	0.161763	0.123349
chrX	123647771	123647871	7878192	0	-	0.38	(0.378,0.408]	chrX	802527	20	INTRON	INTRON	THOC2	ENSG00000125676.20	ENST00000245838.13:ENST00000355725.8:ENST00000491737.5	protein_coding	protein_coding	protein_coding	protein_coding	7	68	2	1.85968	2.161705	2.46373	0.0382831	0.0075228099999999996	0.141795	0.0773151
chr3	172757365	172757465	1563280	0	+	0.34	(0.32,0.35]	chr3	161732	2	SS5_PROX	SS5_PROX:INTRON	ECT2	ENSG00000114346.14	ENST00000232458.9:ENST00000540509.5:ENST00000392692.8:ENST00000417960.5:ENST00000428567.5:ENST00000415665.5:ENST00000441497.6	protein_coding	protein_coding	protein_coding	protein_coding	6	64	2	1.57911	2.1616299999999997	2.74415	0.0313129	0.0198267	0.144381	0.109608
chr7	157366301	157366401	3455597	0	+	0.34	(0.32,0.35]	chr7	323066	4	SS3_PROX	SS3_PROX:INTRON	DNAJB6	ENSG00000105993.15	ENST00000441561.5:ENST00000429029.6:ENST00000262177.9:ENST00000486083.6:ENST00000417758.5:ENST00000459889.5:ENST00000443280.5:ENST00000488001.5:ENST00000441291.5:ENST00000437030.5:ENST00000412557.5:ENST00000453383.5:ENST00000634080.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	64	2	1.57911	2.1616299999999997	2.74415	0.0313129	0.0198267	0.144381	0.109608
chr15	78499798	78499895	6068132	0	+	0.402062	(0.378,0.408]	chr15	578031	18	UTR3	UTR3:EXON_MRNA	IREB2	ENSG00000136381.13	ENST00000258886.13	protein_coding	protein_coding	protein_coding	protein_coding	10	114	2	1.97139	2.1616	2.35181	0.00460762	0.00287186	0.0625743	0.0474836
chr1	246885492	246885586	681475	0	-	0.404255	(0.378,0.408]	chr1	79932	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	AHCTF1	ENSG00000153207.16	ENST00000648844.2:ENST00000326225.3:ENST00000366508.5:ENST00000470300.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	44	2	1.59317	2.16155	2.72993	0.0603812	0.0188736	0.19151	0.108861
chr10	67885699	67885799	4440409	0	+	0.39	(0.378,0.408]	chr10	409421	3	SS5_PROX	SS5_PROX:INTRON	SIRT1	ENSG00000096717.12	ENST00000212015.11:ENST00000432464.5:ENST00000497639.5:ENST00000473922.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	44	2	1.59317	2.16155	2.72993	0.0603812	0.0188736	0.19151	0.108861
chr7	26186675	26186775	3506083	0	-	0.39	(0.378,0.408]	chr7	327154	10	INTRON	INTRON	HNRNPA2B1	ENSG00000122566.22	ENST00000679318.1:ENST00000677339.1:ENST00000678501.1:ENST00000676903.1:ENST00000608362.2:ENST00000677631.1:ENST00000676749.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	44	2	1.59317	2.16155	2.72993	0.0603812	0.0188736	0.19151	0.108861
chr6	31541327	31541395	3078840	0	-	0.441176	(0.44,0.476]	chr6	286772	1	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS5_ADJ:SS3_PROX:SS5_PROX:INTRON	DDX39B	ENSG00000198563.14	ENST00000458640.5:ENST00000462256.5:ENST00000396172.6:ENST00000482195.5:ENST00000431908.5:ENST00000481456.1:ENST00000427214.5:ENST00000428098.5:ENST00000419338.5:ENST00000456662.5:ENST00000428450.5:ENST00000449757.5:ENST00000456976.5:ENST00000418897.5:ENST00000419020.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	66	2	1.72421	2.161545	2.59888	0.0285163	0.00487719	0.12666	0.0640618
chr6	111006245	111006345	2939547	0	+	0.47	(0.44,0.476]	chr6	276871	61	INTRON	INTRON	RPF2	ENSG00000197498.13	ENST00000368864.8:ENST00000441448.7:ENST00000607388.1:ENST00000425871.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	66	2	1.72421	2.161545	2.59888	0.0285163	0.00487719	0.12666	0.0640618
chr11	31503973	31504073	4939185	0	-	0.35	(0.32,0.35]	chr11	462601	154	INTRON	INTRON	IMMP1L	ENSG00000148950.11	ENST00000532287.6:ENST00000534812.5:ENST00000526776.5:ENST00000278200.5:ENST00000648582.1:ENST00000533642.1:ENST00000527184.5:ENST00000528161.5:ENST00000532624.5:ENST00000529749.5:ENST00000530023.5:ENST00000531693.1:ENST00000532668.1:ENST00000533921.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	103	2	1.61334	2.161505	2.70967	0.0322135	0.00105927	0.132553	0.0299929
chr12	104291703	104291803	5210057	0	+	0.52	(0.515,0.57]	chr12	493210	2	INTRON	INTRON	TXNRD1	ENSG00000198431.17	ENST00000525566.6:ENST00000526266.5:ENST00000503506.6:ENST00000526691.5:ENST00000531691.5:ENST00000526390.5:ENST00000531689.5:ENST00000529546.5:ENST00000529751.1:ENST00000528079.6:ENST00000526580.5:ENST00000529784.5:ENST00000524698.5:ENST00000527688.5:ENST00000527335.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	77	2	2.05181	2.161485	2.27116	0.00601759	0.00490181	0.0700813	0.0609494
chr22	16785607	16785706	7546255	0	-	0.474747	(0.44,0.476]	chr22	771315	8	INTRON	INTRON	XKR3	ENSG00000172967.8	ENST00000331428.5:ENST00000684488.1	protein_coding	protein_coding	protein_coding	protein_coding	6	69	2	2.14666	2.16143	2.1762	0.0116436	0.0092251	0.0889659	0.0855292
chr1	167546385	167546485	576966	0	-	0.52	(0.515,0.57]	chr1	69956	1	SS3_PROX	SS3_PROX:INTRON	CREG1	ENSG00000143162.9	ENST00000466652.2:ENST00000370509.5	protein_coding	protein_coding	protein_coding	protein_coding	8	55	2	1.2325	2.16126	3.09002	0.0576823	0.00491099	0.188193	0.0609494
chr6	110891866	110891964	2939119	0	+	0.469388	(0.44,0.476]	chr6	276780	12	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	AMD1	ENSG00000123505.19	ENST00000451850.6:ENST00000675380.1:ENST00000368882.8:ENST00000672937.2:ENST00000368885.8:ENST00000368877.9:ENST00000368876.2:ENST00000612642.4:ENST00000619590.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	100	2	1.84794	2.161155	2.47437	0.0127847	0.00117531	0.0926667	0.0316592
chr19	10922638	10922729	7136651	0	-	0.582418	(0.57,1]	chr19	719735	6	UTR3	UTR3:EXON_MRNA	YIPF2	ENSG00000130733.11	ENST00000253031.6:ENST00000586748.6	protein_coding	protein_coding	protein_coding	protein_coding	31	155	2	1.73901	2.16108	2.58315	6.80941e-4	2.08794e-5	0.023732	0.00372389
chr20	32804640	32804738	7257113	0	+	0.346939	(0.32,0.35]	chr20	737228	18	INTRON	INTRON	DNMT3B	ENSG00000088305.19	ENST00000696232.1:ENST00000328111.6:ENST00000696231.1:ENST00000348286.6:ENST00000353855.6:ENST00000696233.1:ENST00000443239.7:ENST00000456297.6:ENST00000201963.3:ENST00000696238.1:ENST00000696239.1:ENST00000696245.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	11	151	2	1.61334	2.16104	2.70874	0.0322135	1.16796e-4	0.132553	0.00929802
chr7	102373036	102373135	3371165	0	+	0.353535	(0.35,0.378]	chr7	315430	66	INTRON	INTRON	PRKRIP1:ENSG00000239969	ENSG00000128563.13:ENSG00000239969.6	ENST00000477886.5:ENST00000469763.5:ENST00000482549.5:ENST00000496391.5:ENST00000484974.5:ENST00000492837.1:ENST00000482465.5	protein_coding	protein_coding	protein_coding:transcribed_unprocessed_pseudogene	protein_coding:processed_transcript	7	80	2	1.3017	2.160985	3.02027	0.0757564	8.40802e-4	0.194427	0.0263691
chr1	1763232	1763332	361583	0	-	0.52	(0.515,0.57]	chr1	42211	8	INTRON	INTRON	NADK	ENSG00000008130.15	ENST00000378625.5:ENST00000341991.7:ENST00000341426.9:ENST00000492845.6:ENST00000492768.5:ENST00000460602.5:ENST00000464373.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	49	2	1.8661	2.160975	2.45585	0.0274846	0.00797827	0.123904	0.0798772
chr17	81564361	81564457	6848850	0	-	0.520833	(0.515,0.57]	chr17	678121	5	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	NPLOC4	ENSG00000182446.14	ENST00000331134.11:ENST00000572760.5:ENST00000572346.5:ENST00000573519.5:ENST00000573876.1:ENST00000571714.5:ENST00000572824.1:ENST00000573212.5:ENST00000576713.6:ENST00000374747.9:ENST00000576940.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	49	2	1.8661	2.160975	2.45585	0.0274846	0.00797827	0.123904	0.0798772
chr1	113089619	113089718	188258	0	+	0.282828	(0.28,0.32]	chr1	20854	156	INTRON	INTRON	LRIG2	ENSG00000198799.12	ENST00000361127.6	protein_coding	protein_coding	protein_coding	protein_coding	5	76	2	1.81582	2.16092	2.50602	0.068122	0.00290205	0.184298	0.0494641
chr6	31541463	31541531	3078842	0	-	0.397059	(0.378,0.408]	chr6	286773	2	UTR5	UTR5:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DDX39B	ENSG00000198563.14	ENST00000458640.5:ENST00000462256.5:ENST00000396172.6:ENST00000482195.5:ENST00000431908.5:ENST00000481456.1:ENST00000427214.5:ENST00000428098.5:ENST00000419338.5:ENST00000456662.5:ENST00000428450.5:ENST00000449757.5:ENST00000456976.5:ENST00000418897.5:ENST00000419020.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	11	132	2	1.8004	2.1609	2.5214	0.0096453	7.42685e-4	0.0870523	0.0250442
chr9	131131810	131131905	4215684	0	+	0.484211	(0.476,0.515]	chr9	386526	6	INTRON	INTRON	NUP214	ENSG00000126883.19	ENST00000695497.1:ENST00000695498.1:ENST00000695496.1:ENST00000695495.1:ENST00000695494.1:ENST00000695493.1:ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000525561.2:ENST00000651022.1:ENST00000651639.1:ENST00000695499.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	51	2	1.58972	2.160885	2.73205	0.0427022	0.0159328	0.148082	0.109464
chr16	1963356	1963454	6430558	0	-	0.55102	(0.515,0.57]	chr16	618456	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPS2	ENSG00000140988.16	ENST00000343262.9:ENST00000526522.5:ENST00000533161.5:ENST00000527871.5:ENST00000530225.5:ENST00000531065.5:ENST00000527109.5:ENST00000533872.5:ENST00000532746.5:ENST00000533186.5:ENST00000529806.5:ENST00000534461.5:ENST00000527302.1:ENST00000526908.1:ENST00000527826.1:ENST00000563194.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	73	2	1.88259	2.1608	2.43901	0.0251849	0.00146205	0.133519	0.0346249
chr20	62043105	62043205	7360690	0	-	0.53	(0.515,0.57]	chr20	750714	280	INTRON	INTRON	TAF4	ENSG00000130699.20	ENST00000252996.9:ENST00000608887.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	40	2	1.97035	2.1608	2.35125	0.0436431	0.0195832	0.162255	0.109483
chr2	171927438	171927538	918410	0	+	0.38	(0.378,0.408]	chr2	101183	14	INTRON	INTRON	HAT1	ENSG00000128708.13	ENST00000412731.5:ENST00000264108.5:ENST00000457761.6:ENST00000494601.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	39	2	2.05897	2.160745	2.26252	0.056222	0.0339294	0.18407	0.134508
chr6	161062916	161063016	3025207	0	+	0.36	(0.35,0.378]	chr6	282325	126	INTRON	INTRON	MAP3K4	ENSG00000085511.20	ENST00000366919.6:ENST00000392142.9:ENST00000542952.5:ENST00000366920.6:ENST00000348824.11:ENST00000544041.5:ENST00000490904.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	49	2	1.75081	2.16065	2.57049	0.0427459	0.0262669	0.148082	0.133676
chr2	55033218	55033318	1121237	0	-	0.34	(0.32,0.35]	chr2	120163	46	INTRON	INTRON	RTN4	ENSG00000115310.19	ENST00000404909.5:ENST00000394611.6:ENST00000317610.11:ENST00000357732.8:ENST00000337526.11:ENST00000357376.7:ENST00000405240.5:ENST00000438462.1:ENST00000427710.5	protein_coding	protein_coding	protein_coding	protein_coding	8	108	2	1.8526	2.16059	2.46858	0.0332438	7.56101e-4	0.134145	0.0251966
chr12	112083813	112083912	5415173	0	-	0.353535	(0.35,0.378]	chr12	517230	23	INTRON	INTRON	NAA25	ENSG00000111300.10	ENST00000261745.9:ENST00000552527.5:ENST00000549711.5:ENST00000551858.1:ENST00000547133.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	113	2	1.4117	2.160575	2.90945	0.0380767	3.57589e-4	0.141678	0.0169202
chr19	51591731	51591828	7093763	0	+	0.463918	(0.44,0.476]	chr19	711055	23	UTR3	UTR3:EXON_MRNA	ZNF175	ENSG00000105497.8	ENST00000262259.7	protein_coding	protein_coding	protein_coding	protein_coding	6	70	2	2.03266	2.160565	2.28847	0.0155853	0.00692113	0.109411	0.0718189
chr1	35083435	35083535	67947	0	+	0.35	(0.32,0.35]	chr1	8657	36	INTRON	INTRON	ZMYM1	ENSG00000197056.11	ENST00000650449.1:ENST00000611874.4:ENST00000417119.5:ENST00000466390.5:ENST00000359858.9:ENST00000488455.5:ENST00000373330.1:ENST00000373329.5:ENST00000475654.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	56	2	1.77704	2.1605600000000003	2.54408	0.0719969	0.00659077	0.187322	0.0737338
chr15	38486922	38487021	5999739	0	+	0.343434	(0.32,0.35]	chr15	570289	24	UTR3	UTR3:EXON_MRNA	FAM98B	ENSG00000171262.11	ENST00000397609.6	protein_coding	protein_coding	protein_coding	protein_coding	3	42	2	1.83416	2.160545	2.48693	0.0631198	0.0338094	0.176946	0.146709
chr15	22576758	22576853	5975371	0	+	0.368421	(0.35,0.378]	chr15	568227	1	EXON_LNCRNA	EXON_LNCRNA:SS3_PROX:INTRON	HERC2P2	ENSG00000276550.5	ENST00000613386.4:ENST00000619021.4:ENST00000618651.1:ENST00000690192.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	17	175	2	1.65527	2.160535	2.6658	0.00503191	7.55807e-4	0.0646039	0.0251563
chr16	89466471	89466571	6543361	0	-	0.38	(0.378,0.408]	chr16	634281	348	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	106	2	1.85455	2.16053	2.46651	0.0192049	6.45662e-4	0.108861	0.023017
chr17	46123037	46123137	6784166	0	-	0.43	(0.408,0.44]	chr17	669216	18	INTRON	INTRON	KANSL1	ENSG00000120071.15	ENST00000574590.6:ENST00000572904.6:ENST00000432791.7:ENST00000575318.6:ENST00000638275.1:ENST00000262419.10:ENST00000648792.1:ENST00000639531.1:ENST00000639150.1:ENST00000639853.1:ENST00000571698.2:ENST00000639375.1:ENST00000638269.1:ENST00000576248.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	73	2	1.70933	2.160515	2.6117	0.0189186	0.00555224	0.118303	0.0648867
chr7	72886647	72886746	3329862	0	+	0.333333	(0.32,0.35]	chr7	309555	64	INTRON	INTRON	POM121	ENSG00000196313.13	ENST00000627934.3:ENST00000395270.5	protein_coding	protein_coding	protein_coding	protein_coding	5	67	2	1.69107	2.1603850000000002	2.6297	0.0517392	0.00476699	0.159306	0.0636201
chr6	34310877	34310977	3083955	0	-	0.35	(0.32,0.35]	chr6	288627	148	INTRON	INTRON	NUDT3:RPS10-NUDT3	ENSG00000272325.2:ENSG00000270800.3	ENST00000607016.2:ENST00000639725.1:ENST00000639877.1:ENST00000605528.2	protein_coding	protein_coding	protein_coding	protein_coding	7	69	2	1.32932	2.160285	2.99125	0.0540385	0.00958447	0.181713	0.0820838
chr7	133678725	133678825	3422438	0	+	0.53	(0.515,0.57]	chr7	319395	482	INTRON	INTRON	EXOC4	ENSG00000131558.15	ENST00000253861.5:ENST00000479839.6:ENST00000483800.5:ENST00000469115.5:ENST00000489931.5:ENST00000482089.5:ENST00000460346.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	94	2	1.9706	2.16024	2.34988	0.00469345	0.00194926	0.0600108	0.0410995
chr7	158797541	158797641	3689491	0	-	0.47	(0.44,0.476]	chr7	342410	2	SS5_PROX	SS5_PROX:INTRON	ESYT2	ENSG00000117868.18	ENST00000251527.10:ENST00000275418.13:ENST00000652148.1:ENST00000483958.5:ENST00000497111.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	57	2	1.98146	2.160225	2.33899	0.0186013	0.0142027	0.117264	0.0959987
chr20	49285282	49285381	7284674	0	+	0.444444	(0.44,0.476]	chr20	741065	31	INTRON	INTRON	ZFAS1	ENSG00000177410.13	ENST00000371743.8:ENST00000417721.5:ENST00000441722.5:ENST00000450535.5:ENST00000458653.5:ENST00000428008.6:ENST00000620594.2:ENST00000652916.1:ENST00000326677.9:ENST00000659056.1	lncRNA	lncRNA	lncRNA	lncRNA	16	180	2	2.10962	2.160215	2.21081	0.00161834	7.60487e-4	0.0369252	0.0252625
chr6	107437496	107437596	3181693	0	-	0.38	(0.378,0.408]	chr6	296346	1028	INTRON	INTRON	PDSS2	ENSG00000164494.12	ENST00000369037.9:ENST00000369031.4	protein_coding	protein_coding	protein_coding	protein_coding	5	53	2	1.93153	2.1601299999999997	2.38873	0.0458857	0.0127237	0.149888	0.0986314
chr6	4053666	4053764	2790033	0	+	0.377551	(0.35,0.378]	chr6	263541	4	INTRON	INTRON	PRPF4B	ENSG00000112739.17	ENST00000480058.5:ENST00000337659.11:ENST00000481109.5:ENST00000463634.6:ENST00000466185.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	86	2	2.13524	2.1600900000000003	2.18494	0.0130865	0.0047516	0.0934394	0.0635784
chr3	19967247	19967347	1376237	0	+	0.47	(0.44,0.476]	chr3	145051	140	INTRON	INTRON	RAB5A	ENSG00000144566.11	ENST00000273047.9:ENST00000412966.5:ENST00000446547.5:ENST00000422242.1:ENST00000469122.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	59	2	1.29261	2.16006	3.02751	0.0583425	0.00715968	0.189184	0.0723634
chr1	20776202	20776300	389754	0	-	0.326531	(0.32,0.35]	chr1	46565	3	EXON_LNCRNA	EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HP1BP3	ENSG00000127483.19	ENST00000438032.6:ENST00000312239.10:ENST00000419948.5:ENST00000424732.5:ENST00000417710.5:ENST00000487117.1:ENST00000375000.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	20	237	2	1.90102	2.16004	2.41906	0.0014129	9.93828e-4	0.0345459	0.0288906
chr10	21546737	21546836	4404534	0	+	0.454545	(0.44,0.476]	chr10	406427	50	INTRON	INTRON	MLLT10	ENSG00000078403.17	ENST00000651097.1:ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000377100.8:ENST00000377091.7:ENST00000650772.1:ENST00000651298.1:ENST00000652497.1:ENST00000495130.5:ENST00000377059.7:ENST00000621220.4:ENST00000476557.5:ENST00000462999.5:ENST00000430455.2:ENST00000479634.1:ENST00000480415.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	90	2	1.90375	2.160015	2.41628	0.0156406	0.00156262	0.101393	0.0365263
chr2	182947655	182947754	1285095	0	-	0.272727	[0,0.28]	chr2	135311	6	INTRON	INTRON	NCKAP1	ENSG00000061676.15	ENST00000361354.9:ENST00000360982.2	protein_coding	protein_coding	protein_coding	protein_coding	5	71	2	1.67675	2.15992	2.64309	0.0352695	0.0308646	0.150332	0.13151
chr8	123443419	123443517	3851658	0	+	0.44898	(0.44,0.476]	chr8	354880	13	INTRON	INTRON	NTAQ1	ENSG00000156795.8	ENST00000524254.5:ENST00000650311.1:ENST00000523551.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	37	2	2.02558	2.159915	2.29425	0.0518406	0.0363567	0.176696	0.138959
chr3	37353515	37353613	1396883	0	+	0.408163	(0.378,0.408]	chr3	146452	59	INTRON	INTRON	GOLGA4	ENSG00000144674.17	ENST00000444882.5:ENST00000356847.8:ENST00000361924.7:ENST00000437131.1	protein_coding	protein_coding	protein_coding	protein_coding	6	57	2	1.58985	2.15989	2.72993	0.0290335	0.0188736	0.141186	0.108861
chr3	37277887	37277986	1396102	0	+	0.343434	(0.32,0.35]	chr3	146333	14	INTRON	INTRON	GOLGA4	ENSG00000144674.17	ENST00000435830.6:ENST00000444882.5:ENST00000356847.8:ENST00000450863.6:ENST00000361924.7:ENST00000429018.5:ENST00000431105.1:ENST00000419177.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	14	157	2	1.87908	2.159825	2.44057	0.00466047	0.00241325	0.0600108	0.0453973
chr16	58597841	58597941	6496060	0	-	0.52	(0.515,0.57]	chr16	628630	86	INTRON	INTRON	CNOT1	ENSG00000125107.19	ENST00000317147.10:ENST00000569240.5:ENST00000567188.5:ENST00000441024.6:ENST00000565605.5:ENST00000564557.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	52	2	1.97876	2.159815	2.34087	0.0469761	0.00610685	0.151917	0.0706941
chr1	202766200	202766298	620316	0	-	0.561224	(0.515,0.57]	chr1	73634	22	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	KDM5B	ENSG00000117139.18	ENST00000367265.9:ENST00000648338.1:ENST00000649542.1:ENST00000647757.1:ENST00000367264.7:ENST00000648473.1:ENST00000650569.1:ENST00000648056.1:ENST00000649770.1:ENST00000648469.1:ENST00000650417.1:ENST00000235790.9:ENST00000650422.1:ENST00000648738.1:ENST00000648744.1:ENST00000648958.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	68	2	1.84511	2.159805	2.4745	0.0167182	0.00279583	0.110511	0.0469265
chr1	19222228	19222327	386912	0	-	0.464646	(0.44,0.476]	chr1	46157	15	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	EMC1	ENSG00000127463.16	ENST00000477853.6:ENST00000688219.1:ENST00000690732.1:ENST00000690451.1:ENST00000688667.1:ENST00000685099.1:ENST00000685594.1:ENST00000690823.1:ENST00000692207.1:ENST00000688332.1:ENST00000693007.1:ENST00000688918.1:ENST00000691945.1:ENST00000375199.7:ENST00000375208.7:ENST00000486405.2:ENST00000486238.1:ENST00000494770.7:ENST00000462505.1:ENST00000692400.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	48	2	2.0776	2.159745	2.24189	0.0292951	0.0193405	0.141862	0.108861
chr1	247209891	247209990	684098	0	-	0.444444	(0.44,0.476]	chr1	80206	5	INTRON	INTRON	ZNF731P	ENSG00000227671.4	ENST00000606173.1:ENST00000606454.1:ENST00000606212.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	4	48	2	2.0776	2.159745	2.24189	0.0292951	0.0193405	0.141862	0.108861
chr5	87366695	87366795	2411793	0	+	0.45	(0.44,0.476]	chr5	232449	2	SS5_PROX	SS5_PROX:INTRON	RASA1	ENSG00000145715.15	ENST00000274376.11:ENST00000515800.6:ENST00000456692.6:ENST00000506290.1:ENST00000512763.5:ENST00000509953.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	48	2	2.0776	2.159745	2.24189	0.0292951	0.0193405	0.141862	0.108861
chr7	23384810	23384910	3502804	0	-	0.46	(0.44,0.476]	chr7	326877	218	INTRON	INTRON	IGF2BP3	ENSG00000136231.14	ENST00000258729.8:ENST00000421467.6:ENST00000468263.5:ENST00000492771.5:ENST00000479504.5:ENST00000466809.6:ENST00000491719.5:ENST00000465058.5:ENST00000469723.5:ENST00000474105.5:ENST00000476938.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	48	2	2.0776	2.159745	2.24189	0.0292951	0.0193405	0.141862	0.108861
chr11	66619804	66619904	4810830	0	+	0.51	(0.476,0.515]	chr11	447854	3	SS5_PROX	SS5_PROX:INTRON	RBM14-RBM4:RBM14	ENSG00000248643.5:ENSG00000239306.5	ENST00000412278.2:ENST00000393979.3:ENST00000511114.1:ENST00000310137.5:ENST00000409372.1:ENST00000421355.1:ENST00000443702.1:ENST00000500635.2:ENST00000409738.4:ENST00000461478.1:ENST00000496694.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	11	120	2	1.58148	2.1595	2.73752	0.0175606	4.15782e-4	0.11319	0.0188225
chr5	126784644	126784744	2479250	0	+	0.53	(0.515,0.57]	chr5	236699	64	INTRON	INTRON	LMNB1	ENSG00000113368.12	ENST00000460265.5:ENST00000261366.10:ENST00000504788.5:ENST00000472034.5:ENST00000492190.5:ENST00000395354.1:ENST00000463908.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	52	2	2.03361	2.159475	2.28534	0.0325854	0.0061678	0.145164	0.067653
chr1	89851055	89851155	159826	0	+	0.35	(0.32,0.35]	chr1	17285	40	INTRON	INTRON	LRRC8D	ENSG00000171492.14	ENST00000525774.5:ENST00000337338.9:ENST00000394593.7:ENST00000532201.5:ENST00000414841.1:ENST00000527156.1:ENST00000441269.2	protein_coding	protein_coding	protein_coding	protein_coding	6	65	2	1.6868	2.15945	2.6321	0.0268	0.0217601	0.123836	0.123349
chr8	60253042	60253142	3956617	0	-	0.43	(0.408,0.44]	chr8	362980	203	INTRON	INTRON	CA8	ENSG00000178538.10	ENST00000317995.5:ENST00000524872.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	73	2	1.66945	2.159445	2.64944	0.0218479	0.00481947	0.123836	0.060277
chr15	64374659	64374758	6205022	0	-	0.454545	(0.44,0.476]	chr15	591795	5	INTRON	INTRON	ENSG00000259316:PCLAF	ENSG00000259316.12:ENSG00000166803.14	ENST00000634318.1:ENST00000635704.1:ENST00000634529.1:ENST00000635511.1:ENST00000635605.1:ENST00000635593.1:ENST00000635320.1:ENST00000300035.9:ENST00000380258.6:ENST00000559519.5:ENST00000558008.3:ENST00000558043.5:ENST00000560234.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	91	2	2.08453	2.15939	2.23425	0.00689	0.00441123	0.0750118	0.0587529
chr8	54096731	54096830	3953827	0	-	0.484848	(0.476,0.515]	chr8	362624	306	INTRON	INTRON	LYPLA1	ENSG00000120992.18	ENST00000316963.8:ENST00000618914.4:ENST00000618741.1:ENST00000343231.10:ENST00000519272.5:ENST00000518546.5:ENST00000522007.5:ENST00000519891.5:ENST00000521352.5:ENST00000521898.5:ENST00000519926.5:ENST00000517297.5:ENST00000520896.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	87	2	1.72573	2.159385	2.59304	0.0196488	0.00158794	0.109608	0.0367961
chr16	88947822	88947922	6541005	0	-	0.51	(0.476,0.515]	chr16	634104	61	INTRON	INTRON	CBFA2T3	ENSG00000129993.15	ENST00000268679.9:ENST00000563640.1:ENST00000570046.1	protein_coding	protein_coding	protein_coding	protein_coding	13	143	2	2.09985	2.15923	2.21861	0.00221385	0.00138145	0.0419348	0.0341261
chr12	116165102	116165202	5424420	0	-	0.43	(0.408,0.44]	chr12	518263	532	INTRON	INTRON	MED13L	ENSG00000123066.9	ENST00000281928.9:ENST00000650226.1:ENST00000548743.2:ENST00000647567.1:ENST00000551197.2	protein_coding	protein_coding	protein_coding	protein_coding	5	60	2	1.81572	2.15921	2.5027	0.0626779	0.00238178	0.175915	0.0449397
chr1	213155367	213155467	311748	0	+	0.52	(0.515,0.57]	chr1	35945	251	INTRON	INTRON	RPS6KC1	ENSG00000136643.12	ENST00000615329.4:ENST00000543354.5:ENST00000614059.4:ENST00000543470.5:ENST00000366960.8:ENST00000366959.4:ENST00000490299.5:ENST00000468069.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	31	2	2.12971	2.1591050000000003	2.1885	0.0757903	0.0202537	0.194427	0.121364
chr14	100358357	100358457	5968715	0	-	0.53	(0.515,0.57]	chr14	567084	34	INTRON	INTRON	WARS1	ENSG00000140105.18	ENST00000392882.7:ENST00000358655.8:ENST00000355338.6:ENST00000344102.9:ENST00000557135.5:ENST00000556645.5:ENST00000553395.5:ENST00000556504.5:ENST00000554084.5:ENST00000557722.5:ENST00000557297.5:ENST00000556435.5:ENST00000553808.5:ENST00000554331.5:ENST00000555063.5:ENST00000556338.5:ENST00000557239.5:ENST00000556698.5:ENST00000553524.5:ENST00000555410.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	31	2	2.12971	2.1591050000000003	2.1885	0.0757903	0.0202537	0.194427	0.121364
chr16	29525370	29525470	6470819	0	-	0.35	(0.32,0.35]	chr16	625147	195	INTRON	INTRON	ENSG00000288632	ENSG00000288632.1	ENST00000675579.1	lncRNA	lncRNA	lncRNA	lncRNA	5	67	2	1.77409	2.159085	2.54408	0.0414296	0.00659077	0.146067	0.0737338
chr8	60256735	60256835	3956654	0	-	0.29	(0.28,0.32]	chr8	362980	240	INTRON	INTRON	CA8	ENSG00000178538.10	ENST00000317995.5:ENST00000524872.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	61	2	1.76293	2.1590700000000003	2.55521	0.0766478	0.0067419	0.196164	0.0739405
chr15	41350393	41350487	6004950	0	+	0.351064	(0.35,0.378]	chr15	571309	8	INTRON	INTRON	NUSAP1	ENSG00000137804.14	ENST00000668273.1:ENST00000260359.10:ENST00000558123.5:ENST00000559046.5:ENST00000414849.6:ENST00000450592.6:ENST00000559596.6:ENST00000558582.5:ENST00000560747.5:ENST00000560177.5:ENST00000557840.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	97	2	2.06612	2.1590100000000003	2.2519	0.0164908	0.0020199	0.102419	0.0416115
chr11	57793385	57793474	4793451	0	+	0.348315	(0.32,0.35]	chr11	443738	1	EXON_MRNA	EXON_MRNA:INTRON	ENSG00000288534:CTNND1	ENSG00000288534.1:ENSG00000198561.16	ENST00000673781.1:ENST00000673810.1:ENST00000674116.1:ENST00000674060.1:ENST00000524630.5:ENST00000529919.5:ENST00000533189.1:ENST00000682741.1:ENST00000358694.10:ENST00000361332.8:ENST00000361391.10:ENST00000361796.9:ENST00000415361.6:ENST00000426142.6:ENST00000428599.6:ENST00000525902.5:ENST00000526357.5:ENST00000526772.5:ENST00000527467.5:ENST00000528232.5:ENST00000528621.5:ENST00000529526.5:ENST00000529873.5:ENST00000529986.5:ENST00000530094.5:ENST00000530748.5:ENST00000531014.5:ENST00000532245.5:ENST00000532463.5:ENST00000532649.5:ENST00000532787.5:ENST00000532844.5:ENST00000533667.5:ENST00000534579.5:ENST00000399050.10:ENST00000526938.5:ENST00000531007.2:ENST00000674015.1:ENST00000673826.1:ENST00000673683.1:ENST00000674106.1:ENST00000530068.5:ENST00000682814.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	81	2	1.81388	2.158995	2.50411	0.0371014	0.00267989	0.139201	0.0478767
chr16	30241427	30241525	6472520	0	-	0.357143	(0.35,0.378]	chr16	625558	8	INTRON	INTRON	NPIPB13	ENSG00000198064.14	ENST00000520915.5:ENST00000568053.5:ENST00000564502.1:ENST00000564219.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	83	2	1.77377	2.15899	2.54421	0.0180971	0.00630238	0.107237	0.0722266
chr1	28509178	28509269	57205	0	+	0.43956	(0.408,0.44]	chr1	7388	4	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	RCC1:SNHG3	ENSG00000180198.17:ENSG00000242125.3	ENST00000398958.6:ENST00000649185.1:ENST00000413987.1:ENST00000427469.5:ENST00000683442.1:ENST00000434290.6:ENST00000373833.10:ENST00000437681.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	58	645	2	2.09907	2.1589650000000002	2.21886	1.05558e-4	8.67401e-5	0.0086856	0.00836912
chr1	246092844	246092944	676560	0	-	0.32	(0.28,0.32]	chr1	79717	394	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000391836.3:ENST00000464398.1:ENST00000453676.5:ENST00000462422.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	73	2	1.68409	2.15894	2.63379	0.0548665	0.00503861	0.165463	0.0646039
chr10	31838409	31838508	4589410	0	-	0.535354	(0.515,0.57]	chr10	423129	63	INTRON	INTRON	ARHGAP12	ENSG00000165322.18	ENST00000344936.7:ENST00000375245.8:ENST00000396144.8:ENST00000375250.9:ENST00000311380.8:ENST00000497103.1:ENST00000454919.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	32	2	2.08547	2.15894	2.23241	0.0581268	0.0289426	0.188651	0.1274
chr12	122419622	122419722	5441652	0	-	0.56	(0.515,0.57]	chr12	520453	190	INTRON	INTRON	CLIP1	ENSG00000130779.22	ENST00000361654.8:ENST00000358808.6:ENST00000620786.5:ENST00000537178.5:ENST00000539080.1	protein_coding	protein_coding	protein_coding	protein_coding	3	32	2	2.08547	2.15894	2.23241	0.0581268	0.0289426	0.188651	0.1274
chr19	12579188	12579288	7139994	0	-	0.56	(0.515,0.57]	chr19	720351	32	UTR3	UTR3:EXON_MRNA	ZNF490	ENSG00000188033.10	ENST00000311437.11	protein_coding	protein_coding	protein_coding	protein_coding	3	32	2	2.08547	2.15894	2.23241	0.0581268	0.0289426	0.188651	0.1274
chr22	20083136	20083234	7478258	0	+	0.540816	(0.515,0.57]	chr22	762700	21	INTRON	INTRON	DGCR8	ENSG00000128191.16	ENST00000383024.6:ENST00000351989.8:ENST00000457069.1	protein_coding	protein_coding	protein_coding	protein_coding	3	32	2	2.08547	2.15894	2.23241	0.0581268	0.0289426	0.188651	0.1274
chr19	47157879	47157979	7084152	0	+	0.58	(0.57,1]	chr19	708792	3	INTRON	INTRON	SAE1	ENSG00000142230.13	ENST00000594144.5:ENST00000413379.7:ENST00000600706.5:ENST00000270225.12:ENST00000598840.5:ENST00000414294.6:ENST00000660039.1:ENST00000664120.1:ENST00000596995.1:ENST00000392776.3:ENST00000659110.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	30	2	1.83769	2.15881	2.47993	0.0297587	0.007207	0.12908	0.0756278
chr16	24545463	24545562	6327714	0	+	0.323232	(0.32,0.35]	chr16	605824	43	INTRON	INTRON	RBBP6	ENSG00000122257.20	ENST00000564314.5:ENST00000567686.5:ENST00000568015.5:ENST00000319715.10:ENST00000452655.6:ENST00000381039.7:ENST00000646282.1:ENST00000348022.6	protein_coding	protein_coding	protein_coding	protein_coding	6	81	2	2.1298	2.158785	2.18777	0.0141189	0.00951422	0.0959618	0.0863913
chr7	10696817	10696917	3483748	0	-	0.4	(0.378,0.408]	chr7	325772	1349	INTRON	INTRON	MGC4859	ENSG00000283117.1	ENST00000634803.1	lncRNA	lncRNA	lncRNA	lncRNA	4	45	2	1.53052	2.158785	2.78705	0.0744544	0.0135539	0.192012	0.101363
chr16	70377453	70377551	6510838	0	-	0.428571	(0.408,0.44]	chr16	630648	16	UTR3	UTR3:EXON_MRNA	ST3GAL2	ENSG00000157350.13	ENST00000342907.3:ENST00000393640.8	protein_coding	protein_coding	protein_coding	protein_coding	9	116	2	1.70409	2.15878	2.61347	0.028108	4.30839e-4	0.137011	0.0190771
chr3	10101644	10101740	1362988	0	+	0.447917	(0.44,0.476]	chr3	143645	5	UTR3	UTR3:EXON_MRNA	FANCD2	ENSG00000144554.13	ENST00000675286.1:ENST00000419585.5:ENST00000421731.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	79	2	1.96975	2.15875	2.34775	0.0123514	0.00466011	0.0914865	0.0629753
chr2	70050723	70050820	1150882	0	-	0.494845	(0.476,0.515]	chr2	122865	22	EXON_LNCRNA	EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PCBP1-AS1	ENSG00000179818.16	ENST00000419542.5:ENST00000682294.1:ENST00000684630.1:ENST00000630975.3:ENST00000435880.6:ENST00000629339.3:ENST00000667874.1:ENST00000628659.2:ENST00000628308.2:ENST00000626515.2:ENST00000625447.2:ENST00000628305.2:ENST00000625625.2:ENST00000625864.2:ENST00000630522.2:ENST00000628837.2:ENST00000627325.2:ENST00000629084.2:ENST00000629603.2:ENST00000625215.2:ENST00000627189.2:ENST00000629836.2:ENST00000626898.2:ENST00000628883.2:ENST00000629533.2:ENST00000627181.2:ENST00000630214.2:ENST00000627918.2:ENST00000628374.2:ENST00000627327.2:ENST00000626495.2:ENST00000629605.2:ENST00000626370.2:ENST00000626842.2:ENST00000630457.2:ENST00000629184.2:ENST00000628551.2:ENST00000630746.2:ENST00000627398.2:ENST00000457076.5:ENST00000625783.2:ENST00000625490.2:ENST00000627050.2:ENST00000630759.2:ENST00000628667.2:ENST00000626632.2:ENST00000631110.2:ENST00000626609.2:ENST00000629506.2:ENST00000630985.2:ENST00000413436.5:ENST00000628147.2:ENST00000631107.2:ENST00000629415.2:ENST00000418564.5:ENST00000630280.2:ENST00000415222.5:ENST00000628322.2:ENST00000626440.2:ENST00000665708.1:ENST00000655086.1:ENST00000420309.6:ENST00000627487.3:ENST00000670036.1:ENST00000655096.1:ENST00000685127.1:ENST00000684907.1:ENST00000685079.1:ENST00000687866.1:ENST00000692564.1:ENST00000686517.1:ENST00000689138.1:ENST00000688056.1:ENST00000594376.6:ENST00000692333.1:ENST00000688045.1:ENST00000657291.1:ENST00000691987.1:ENST00000664483.1:ENST00000601431.6:ENST00000685803.1:ENST00000690200.1:ENST00000686800.1:ENST00000684857.1:ENST00000627037.2:ENST00000629212.2:ENST00000688473.1:ENST00000456161.5:ENST00000627074.2:ENST00000419963.5:ENST00000625227.2:ENST00000599673.5:ENST00000629407.2:ENST00000418308.5:ENST00000630283.2:ENST00000629178.2:ENST00000627542.2:ENST00000626574.2:ENST00000596028.5:ENST00000629485.2:ENST00000630685.2:ENST00000452431.5:ENST00000629374.2:ENST00000423402.5:ENST00000411429.5:ENST00000629188.2:ENST00000434781.5:ENST00000626162.2:ENST00000654878.1:ENST00000659586.1:ENST00000457770.6:ENST00000415742.5:ENST00000627540.2:ENST00000628263.2:ENST00000657575.2:ENST00000689275.1:ENST00000687961.1:ENST00000416395.6:ENST00000692733.1:ENST00000654336.1:ENST00000686055.1:ENST00000626509.3:ENST00000425601.6:ENST00000653064.1:ENST00000656326.1:ENST00000668711.1:ENST00000665172.1:ENST00000630520.3:ENST00000663209.1:ENST00000659305.1:ENST00000654601.1:ENST00000663375.1:ENST00000654958.1:ENST00000665838.1:ENST00000653606.1:ENST00000659941.1:ENST00000669583.1:ENST00000660903.1:ENST00000653596.1:ENST00000656308.1:ENST00000449178.6:ENST00000625955.3:ENST00000655140.1:ENST00000661989.1:ENST00000664419.1:ENST00000670785.1:ENST00000664773.1:ENST00000661703.1:ENST00000658454.1:ENST00000664049.1:ENST00000655058.1:ENST00000366234.7:ENST00000599427.5:ENST00000597318.5:ENST00000625518.2:ENST00000425333.5:ENST00000429599.6:ENST00000432604.5:ENST00000421843.5:ENST00000458686.5:ENST00000421255.5:ENST00000413069.5:ENST00000685037.1:ENST00000458698.6:ENST00000670786.1:ENST00000657164.1:ENST00000665264.1:ENST00000603347.5:ENST00000604346.5:ENST00000413791.5:ENST00000690464.1:ENST00000690924.1:ENST00000688311.1:ENST00000691287.1:ENST00000416506.5:ENST00000655481.1:ENST00000655420.1:ENST00000612202.5:ENST00000666167.1:ENST00000664958.1:ENST00000416068.6:ENST00000653289.1:ENST00000653811.1:ENST00000661863.1:ENST00000659531.1:ENST00000667307.1:ENST00000437019.2:ENST00000666074.1:ENST00000654716.1:ENST00000439670.6:ENST00000669812.1:ENST00000660404.2:ENST00000656852.1:ENST00000670845.1:ENST00000669570.1:ENST00000422515.6:ENST00000653114.1:ENST00000667952.1:ENST00000662224.1:ENST00000664533.1:ENST00000670313.1:ENST00000626558.3:ENST00000670974.1:ENST00000664014.1:ENST00000668191.1:ENST00000609543.6:ENST00000664754.1:ENST00000662103.1:ENST00000669896.1:ENST00000629943.3:ENST00000625788.3:ENST00000663033.1:ENST00000442040.5:ENST00000627155.2:ENST00000601396.5:ENST00000629825.2:ENST00000444410.5:ENST00000614826.4:ENST00000444320.5:ENST00000630377.2:ENST00000601494.1:ENST00000602091.1	lncRNA	lncRNA	lncRNA	lncRNA	5	58	2	2.05714	2.15874	2.26034	0.0166235	0.0156961	0.110511	0.101453
chr16	85562257	85562357	6415454	0	+	0.68	(0.57,1]	chr16	615470	55	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	16	87	2	1.87851	2.15857	2.43863	0.00175638	2.75362e-4	0.0376652	0.0147997
chr7	105041223	105041323	3374894	0	+	0.31	(0.28,0.32]	chr7	315876	2	SS5_PROX	SS5_PROX:INTRON	KMT2E	ENSG00000005483.22	ENST00000622386.2:ENST00000257745.9:ENST00000334884.9:ENST00000311117.8:ENST00000478990.5:ENST00000495267.5:ENST00000476671.5:ENST00000667857.1:ENST00000474203.5:ENST00000482560.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	151	2	1.83867	2.1584700000000003	2.47827	0.00468412	0.00455673	0.0631419	0.0595107
chr11	66622222	66622320	4810855	0	+	0.418367	(0.408,0.44]	chr11	447861	9	INTRON	INTRON	RBM14-RBM4:RBM14	ENSG00000248643.5:ENSG00000239306.5	ENST00000412278.2:ENST00000393979.3:ENST00000511114.1:ENST00000310137.5:ENST00000409372.1:ENST00000421355.1:ENST00000443702.1:ENST00000500635.2:ENST00000409738.4:ENST00000461478.1:ENST00000496694.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	21	231	2	1.73028	2.15846	2.58664	0.00564221	3.48808e-5	0.0653997	0.00470566
chr15	63717773	63717873	6199714	0	-	0.56	(0.515,0.57]	chr15	591322	9	INTRON	INTRON	HERC1	ENSG00000103657.14	ENST00000443617.7:ENST00000561400.1	protein_coding	protein_coding	protein_coding	protein_coding	4	38	2	1.75372	2.15839	2.56306	0.0386904	0.0247751	0.14279	0.131869
chr3	196060604	196060675	1897321	0	-	0.521127	(0.515,0.57]	chr3	189918	1	SS3_PROX	SS3_PROX:INTRON	TFRC	ENSG00000072274.13	ENST00000420415.5:ENST00000360110.9:ENST00000392396.7:ENST00000475593.5:ENST00000465288.5:ENST00000477148.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	40	366	2	1.67714	2.1582600000000003	2.63938	0.0013512	7.49448e-6	0.03386	0.00205959
chr16	21519127	21519227	6461548	0	-	0.53	(0.515,0.57]	chr16	623383	126	INTRON	INTRON	SMG1P3	ENSG00000180747.15	ENST00000522841.6:ENST00000437413.2:ENST00000435197.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	17	151	2	1.95539	2.15825	2.36111	0.00110941	6.84727e-4	0.0305168	0.0239685
chr19	15285349	15285449	7146934	0	-	0.55	(0.515,0.57]	chr19	721965	50	INTRON	INTRON	BRD4	ENSG00000141867.19	ENST00000679869.1:ENST00000360016.9:ENST00000594841.5:ENST00000597315.5:ENST00000601941.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	42	2	1.62814	2.158235	2.68833	0.035203	0.0184931	0.150193	0.108861
chr13	110975930	110976029	5544147	0	+	0.373737	(0.35,0.378]	chr13	529715	95	INTRON	INTRON	LINC00431	ENSG00000225760.2	ENST00000440735.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	4	46	2	1.65083	2.15815	2.66547	0.0521072	0.0233639	0.177022	0.118323
chr17	6916378	6916477	6717367	0	-	0.363636	(0.35,0.378]	chr17	658643	347	INTRON	INTRON	ALOX12-AS1	ENSG00000215067.11	ENST00000653385.1:ENST00000659418.1:ENST00000572385.5:ENST00000570562.5:ENST00000575889.5	lncRNA	lncRNA	lncRNA	lncRNA	4	46	2	1.65083	2.15815	2.66547	0.0521072	0.0233639	0.177022	0.118323
chr3	155878557	155878657	1537206	0	+	0.37	(0.35,0.378]	chr3	160082	73	INTRON	INTRON	GMPS	ENSG00000163655.16	ENST00000496455.7:ENST00000295920.7	protein_coding	protein_coding	protein_coding	protein_coding	4	46	2	1.65083	2.15815	2.66547	0.0521072	0.0233639	0.177022	0.118323
chr9	91358021	91358118	4281188	0	-	0.360825	(0.35,0.378]	chr9	393817	15	INTRON	INTRON	AUH	ENSG00000148090.12	ENST00000303617.5:ENST00000375731.9:ENST00000478465.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	46	2	1.65083	2.15815	2.66547	0.0521072	0.0233639	0.177022	0.118323
chr5	32594470	32594570	2334843	0	+	0.25	[0,0.28]	chr5	225366	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	SUB1	ENSG00000113387.12	ENST00000506237.5:ENST00000512913.5:ENST00000513013.5:ENST00000265073.9:ENST00000511615.5:ENST00000515355.5:ENST00000502897.5:ENST00000504789.5:ENST00000504016.1:ENST00000511175.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	51	2	2.10688	2.158075	2.20927	0.0794763	0.0307985	0.19979	0.143385
chr20	47231390	47231488	7348243	0	-	0.489796	(0.476,0.515]	chr20	749259	12	INTRON	INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000467200.6:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4	protein_coding	protein_coding	protein_coding	protein_coding	5	57	2	1.86014	2.15806	2.45598	0.0277606	0.00945755	0.137011	0.0817766
chr6	140415386	140415486	2970610	0	+	0.45	(0.44,0.476]	chr6	279019	999	INTRON	INTRON	ENSG00000288714	ENSG00000288714.1	ENST00000684511.1	lncRNA	lncRNA	lncRNA	lncRNA	4	49	2	1.93084	2.158015	2.38519	0.0443175	0.012193	0.162302	0.0910127
chr1	213186175	213186275	312059	0	+	0.3	(0.28,0.32]	chr1	35957	93	INTRON	INTRON	RPS6KC1	ENSG00000136643.12	ENST00000615329.4:ENST00000543354.5:ENST00000614059.4:ENST00000543470.5:ENST00000366960.8:ENST00000366959.4:ENST00000490299.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	73	2	2.09794	2.15796	2.21798	0.0340483	0.00901091	0.134863	0.0851009
chr11	70416739	70416830	4821805	0	+	0.527473	(0.515,0.57]	chr11	449630	1	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	CTTN	ENSG00000085733.16	ENST00000346329.7:ENST00000301843.13:ENST00000376561.7:ENST00000415461.2:ENST00000532334.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	77	2	2.11946	2.15794	2.19642	0.00559899	0.00442355	0.0678837	0.0588897
chr1	29149510	29149602	410108	0	-	0.48913	(0.476,0.515]	chr1	49379	3	SS3_PROX	SS3_PROX:INTRON	SRSF4	ENSG00000116350.18	ENST00000373795.7:ENST00000691479.1:ENST00000634348.1:ENST00000466448.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	35	2	1.99341	2.1578549999999996	2.3223	0.0519312	0.037389	0.159306	0.155878
chr12	25220636	25220735	5298075	0	-	0.515152	(0.476,0.515]	chr12	503913	47	INTRON	INTRON	KRAS	ENSG00000133703.14	ENST00000256078.10:ENST00000311936.8:ENST00000690406.1:ENST00000686877.1:ENST00000685328.1:ENST00000693229.1:ENST00000687356.1:ENST00000692768.1:ENST00000688940.1:ENST00000690804.1:ENST00000557334.6:ENST00000688228.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	35	2	1.99341	2.1578549999999996	2.3223	0.0519312	0.037389	0.159306	0.155878
chr3	47633693	47633792	1683563	0	-	0.333333	(0.32,0.35]	chr3	171978	110	INTRON	INTRON	SMARCC1	ENSG00000173473.11	ENST00000254480.10:ENST00000425518.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	51	2	1.60297	2.1578299999999997	2.71269	0.0647328	0.0181461	0.179192	0.114853
chr9	133269164	133269264	4369971	0	-	0.35	(0.32,0.35]	chr9	402068	66	INTRON	INTRON	ABO	ENSG00000175164.16	ENST00000679909.1:ENST00000453660.4:ENST00000647353.1:ENST00000611156.4:ENST00000538324.2:ENST00000651471.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	89	2	1.77157	2.157825	2.54408	0.0193154	0.00659077	0.108861	0.0737338
chr17	1357025	1357124	6699169	0	-	0.494949	(0.476,0.515]	chr17	655527	23	INTRON	INTRON	YWHAE	ENSG00000108953.17	ENST00000264335.13:ENST00000466227.6:ENST00000571732.5:ENST00000573026.1:ENST00000496706.1:ENST00000573196.5:ENST00000575977.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	42	2	1.61586	2.157765	2.69967	0.0567093	0.0195838	0.185107	0.109483
chr7	5780479	5780572	3474963	0	-	0.483871	(0.476,0.515]	chr7	324932	3	INTRON	INTRON	RNF216	ENSG00000011275.19	ENST00000425013.6:ENST00000389902.8:ENST00000411812.1:ENST00000416985.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	42	2	1.61586	2.157765	2.69967	0.0567093	0.0195838	0.185107	0.109483
chr9	123165417	123165516	4339437	0	-	0.50505	(0.476,0.515]	chr9	398906	40	INTRON	INTRON	STRBP	ENSG00000165209.19	ENST00000348403.10:ENST00000447404.6:ENST00000360998.3:ENST00000407982.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	43	2	1.58335	2.1577	2.73205	0.0640461	0.0159328	0.177882	0.109464
chr6	83187575	83187664	3145820	0	-	0.494382	(0.476,0.515]	chr6	293308	1	INTRON	INTRON	PGM3	ENSG00000013375.16	ENST00000513973.6:ENST00000512866.5:ENST00000650640.1:ENST00000616566.5:ENST00000283977.9:ENST00000651425.1:ENST00000650642.1:ENST00000651204.1:ENST00000652222.1:ENST00000506587.5:ENST00000509219.2:ENST00000652468.1:ENST00000510258.1:ENST00000505470.5:ENST00000507554.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	72	2	1.65426	2.15769	2.66112	0.0231344	0.0044598	0.126939	0.0592169
chr7	66711366	66711466	3325181	0	+	0.28	[0,0.28]	chr7	309221	258	INTRON	INTRON	RABGEF1	ENSG00000154710.18	ENST00000607882.5	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	5	85	2	1.79953	2.157685	2.51584	0.0377477	0.0115397	0.156608	0.0889104
chr19	34398051	34398147	7052833	0	+	0.510417	(0.476,0.515]	chr19	703425	9	EXON_MRNA	EXON_MRNA:INTRON	GPI	ENSG00000105220.17	ENST00000415930.8:ENST00000588991.7:ENST00000356487.11:ENST00000647446.1:ENST00000586425.2:ENST00000643067.1:ENST00000586392.1:ENST00000586077.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	13	122	2	1.10022	2.157575	3.21493	0.066433	5.7577e-5	0.182434	0.00620725
chr8	129509832	129509923	4060380	0	-	0.395604	(0.378,0.408]	chr8	369645	3	EXON_LNCRNA	EXON_LNCRNA:SS3_PROX:INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1:ENST00000676273.1:ENST00000667643.1:ENST00000668791.1:ENST00000663716.1:ENST00000663572.1:ENST00000676148.1:ENST00000667962.1:ENST00000674877.1:ENST00000675316.1:ENST00000674656.1:ENST00000446592.7:ENST00000667341.1:ENST00000675186.1:ENST00000652971.1:ENST00000661447.1:ENST00000674863.1:ENST00000675498.1:ENST00000675527.1:ENST00000676108.1:ENST00000657647.1:ENST00000675589.1:ENST00000675913.1:ENST00000675109.1:ENST00000671632.1:ENST00000671311.1:ENST00000676099.1:ENST00000660652.1:ENST00000675522.1:ENST00000675183.1:ENST00000658861.1:ENST00000663991.1:ENST00000675044.1:ENST00000675435.1:ENST00000674639.1:ENST00000676069.1:ENST00000675532.1:ENST00000674762.1:ENST00000523151.6:ENST00000675948.1:ENST00000665364.1:ENST00000657251.1:ENST00000675166.1:ENST00000674883.1:ENST00000675867.1:ENST00000674580.1:ENST00000675393.1:ENST00000520048.1:ENST00000674906.1:ENST00000676030.1:ENST00000670588.1:ENST00000675072.1:ENST00000664936.1:ENST00000652914.1:ENST00000657069.1	lncRNA	lncRNA	lncRNA	lncRNA	4	44	2	1.78011	2.1575699999999998	2.53503	0.0356367	0.0319942	0.151629	0.13174
chr7	152289974	152290074	3679822	0	-	0.42	(0.408,0.44]	chr7	341623	32	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000684262.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	58	2	1.92319	2.157405	2.39162	0.0247322	0.0105837	0.12011	0.0911864
chr17	59827136	59827236	6643602	0	+	0.42	(0.408,0.44]	chr17	648772	90	INTRON	INTRON	VMP1	ENSG00000062716.13	ENST00000262291.9:ENST00000592619.5:ENST00000591877.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	48	2	2.14732	2.1573900000000004	2.16746	0.024436	0.0237354	0.129075	0.12011
chr2	11337199	11337299	1068603	0	-	0.44	(0.408,0.44]	chr2	114093	491	INTRON	INTRON	ROCK2	ENSG00000134318.15	ENST00000315872.11:ENST00000261535.7:ENST00000462366.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	43	2	1.8749	2.15739	2.43988	0.0398236	0.0264246	0.143072	0.133676
chr7	72904283	72904382	3330041	0	+	0.464646	(0.44,0.476]	chr7	309565	128	INTRON	INTRON	POM121	ENSG00000196313.13	ENST00000627934.3:ENST00000395270.5	protein_coding	protein_coding	protein_coding	protein_coding	6	71	2	1.92837	2.157365	2.38636	0.0222222	0.0047296	0.124303	0.0600445
chr20	1390840	1390940	7305353	0	-	0.49	(0.476,0.515]	chr20	743696	128	INTRON	INTRON	FKBP1A	ENSG00000088832.18	ENST00000677937.1:ENST00000439640.5:ENST00000618612.5:ENST00000400137.9:ENST00000678136.1:ENST00000677335.1:ENST00000381719.8:ENST00000678408.1:ENST00000381724.8:ENST00000381715.4:ENST00000678325.1:ENST00000612074.5:ENST00000677078.1:ENST00000677533.1:ENST00000679195.1:ENST00000614856.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	59	2	1.61586	2.1573599999999997	2.69886	0.0567093	0.00385209	0.185107	0.0542786
chr1	8779614	8779714	373404	0	-	0.42	(0.408,0.44]	chr1	43549	259	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000656437.1:ENST00000659924.1	protein_coding	protein_coding	protein_coding	protein_coding	6	69	2	2.00629	2.157335	2.30838	0.0189661	0.00547703	0.108861	0.0671198
chr16	71729295	71729394	6513636	0	-	0.424242	(0.408,0.44]	chr16	631052	4	UTR3	UTR3:EXON_MRNA	AP1G1	ENSG00000166747.13	ENST00000299980.9	protein_coding	protein_coding	protein_coding	protein_coding	6	69	2	2.00629	2.157335	2.30838	0.0189661	0.00547703	0.108861	0.0671198
chr6	7407624	7407722	2800016	0	+	0.428571	(0.408,0.44]	chr6	263866	19	INTRON	INTRON	RIOK1	ENSG00000124784.9	ENST00000379834.7:ENST00000264874.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	69	2	2.00629	2.157335	2.30838	0.0189661	0.00547703	0.108861	0.0671198
chr16	68101296	68101396	6370383	0	+	0.46	(0.44,0.476]	chr16	612188	117	INTRON	INTRON	ENSG00000261864:NFATC3	ENSG00000261864.1:ENSG00000072736.19	ENST00000548144.1:ENST00000563319.5:ENST00000569766.5:ENST00000553077.5:ENST00000566301.5:ENST00000549350.5:ENST00000566893.5:ENST00000575270.5:ENST00000561714.5:ENST00000346183.8:ENST00000568466.6:ENST00000539828.6:ENST00000562171.1:ENST00000349223.9:ENST00000329524.8:ENST00000379165.8:ENST00000562926.5:ENST00000570212.5:ENST00000563796.5:ENST00000567152.5:ENST00000563288.5:ENST00000535127.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA:processed_transcript	5	57	2	1.71574	2.15731	2.59888	0.045256	0.00487719	0.149888	0.0640618
chr20	47245607	47245707	7348387	0	-	0.36	(0.35,0.378]	chr20	749271	2	SS5_PROX	SS5_PROX:INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000467200.6:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000468376.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	79	2	1.87586	2.157175	2.43849	0.0268864	0.00430822	0.135275	0.0578073
chr19	52655162	52655261	7206777	0	-	0.414141	(0.408,0.44]	chr19	731400	4	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	ZNF83:ENSG00000269825	ENSG00000167766.20:ENSG00000269825.2	ENST00000600714.5:ENST00000601257.5:ENST00000594682.6:ENST00000687234.1:ENST00000598536.5:ENST00000595171.5:ENST00000596440.5:ENST00000602232.5:ENST00000598322.2:ENST00000598190.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	13	144	2	2.08953	2.15717	2.22481	0.00182717	0.00179089	0.0392762	0.0386611
chr7	87889250	87889349	3346807	0	+	0.424242	(0.408,0.44]	chr7	311868	8	INTRON	INTRON	DBF4	ENSG00000006634.8	ENST00000413643.5:ENST00000265728.6:ENST00000431138.5:ENST00000430279.5:ENST00000498144.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	15	163	2	1.88723	2.157155	2.42708	0.00284218	6.79047e-4	0.0493576	0.0238419
chr17	60367495	60367595	6805629	0	-	0.48	(0.476,0.515]	chr17	672366	215	INTRON	INTRON	USP32	ENSG00000170832.13	ENST00000300896.9:ENST00000590133.5:ENST00000589335.5:ENST00000393003.7:ENST00000588898.1:ENST00000589761.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	36	2	1.92984	2.15713	2.38442	0.0466474	0.0417472	0.161736	0.151522
chr16	87863935	87864034	6539042	0	-	0.353535	(0.35,0.378]	chr16	633647	4	INTRON	INTRON	SLC7A5	ENSG00000103257.9	ENST00000261622.5	protein_coding	protein_coding	protein_coding	protein_coding	4	52	2	1.81767	2.15705	2.49643	0.0640429	0.00752974	0.177882	0.0773151
chr4	67652798	67652897	2153969	0	-	0.535354	(0.515,0.57]	chr4	212133	32	INTRON	INTRON	UBA6	ENSG00000033178.13	ENST00000322244.10	protein_coding	protein_coding	protein_coding	protein_coding	9	73	2	1.32091	2.157035	2.99316	0.0433059	9.21623e-4	0.162255	0.0278396
chr1	51877182	51877282	455282	0	-	0.34	(0.32,0.35]	chr1	54631	144	INTRON	INTRON	NRDC	ENSG00000078618.23	ENST00000354831.11:ENST00000539524.5:ENST00000352171.12:ENST00000491410.1:ENST00000468722.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	169	2	1.8916	2.1570099999999996	2.42242	0.00936694	3.78401e-4	0.0817766	0.0176313
chr16	74300869	74300951	6389169	0	+	0.353659	(0.35,0.378]	chr16	614399	3	SS3_PROX	SS3_PROX:INTRON	PSMD7	ENSG00000103035.11	ENST00000219313.9:ENST00000568717.1:ENST00000567958.5:ENST00000568615.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	46	2	1.71046	2.156935	2.60341	0.0441269	0.0275785	0.162255	0.123904
chr18	9369560	9369660	6870792	0	+	0.36	(0.35,0.378]	chr18	680672	91	INTRON	INTRON	TWSG1	ENSG00000128791.12	ENST00000583147.5:ENST00000262120.10:ENST00000581641.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	46	2	1.58862	2.156795	2.72497	0.0615516	0.0198266	0.193423	0.109608
chr2	241320387	241320487	1053653	0	+	0.35	(0.32,0.35]	chr2	112201	1	SS5_PROX	SS5_PROX:INTRON	SEPTIN2	ENSG00000168385.18	ENST00000391973.6:ENST00000428282.5:ENST00000492978.5:ENST00000360051.7:ENST00000407017.5:ENST00000445030.5:ENST00000428524.5:ENST00000469434.5:ENST00000616972.4:ENST00000495463.5:ENST00000482304.5:ENST00000475474.5:ENST00000401990.5:ENST00000469175.5:ENST00000407971.5:ENST00000461048.5:ENST00000457335.5:ENST00000436795.5:ENST00000494824.5:ENST00000411484.5:ENST00000462147.5:ENST00000434955.5:ENST00000466211.5:ENST00000391971.7:ENST00000402092.6:ENST00000484740.1:ENST00000473479.5:ENST00000464128.5:ENST00000441533.5:ENST00000467971.5:ENST00000425899.5:ENST00000443492.5:ENST00000437066.5:ENST00000429791.5:ENST00000420786.5:ENST00000475823.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	77	2	2.0893	2.156795	2.22429	0.0226421	0.00738971	0.117557	0.0769106
chr8	140992218	140992317	4079988	0	-	0.474747	(0.44,0.476]	chr8	370590	77	INTRON	INTRON	PTK2	ENSG00000169398.20	ENST00000696786.1:ENST00000522684.5:ENST00000395218.3:ENST00000521059.5:ENST00000519993.5:ENST00000340930.7:ENST00000524357.5:ENST00000521791.5:ENST00000523067.5:ENST00000520828.5:ENST00000519881.5:ENST00000520892.5:ENST00000517453.5:ENST00000520045.5:ENST00000521332.5:ENST00000524040.5:ENST00000523679.1:ENST00000524257.5:ENST00000523797.1:ENST00000519635.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	57	2	1.92837	2.15678	2.38519	0.0222222	0.012193	0.124303	0.0910127
chr9	133362312	133362408	4370299	0	-	0.302083	(0.28,0.32]	chr9	402163	10	UTR3	UTR3:EXON_MRNA	SURF4	ENSG00000148248.14	ENST00000545297.5:ENST00000613129.4:ENST00000618229.4:ENST00000371989.8	protein_coding	protein_coding	protein_coding	protein_coding	11	157	2	1.9109	2.1567600000000002	2.40262	0.0130707	7.45509e-4	0.0934021	0.0250079
chr16	29920309	29920405	6471965	0	-	0.302083	(0.28,0.32]	chr16	625365	8	UTR3	UTR3:EXON_MRNA:INTRON	KCTD13	ENSG00000174943.11	ENST00000308768.9:ENST00000568000.6:ENST00000566842.5:ENST00000568995.1:ENST00000563264.1:ENST00000566413.1:ENST00000561540.2:ENST00000648037.1:ENST00000567795.3:ENST00000649581.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	10	140	2	2.05497	2.15674	2.25851	0.00557435	0.00387201	0.0649303	0.0565824
chr2	38323910	38324010	1098808	0	-	0.37	(0.35,0.378]	chr2	117856	45	INTRON	INTRON	ATL2	ENSG00000119787.14	ENST00000378954.9:ENST00000406122.5:ENST00000405384.6:ENST00000402054.5:ENST00000419554.6:ENST00000651368.1:ENST00000452935.6:ENST00000449130.5:ENST00000443098.5:ENST00000456736.5:ENST00000474535.2:ENST00000472097.1:ENST00000451483.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	52	2	2.14264	2.156715	2.17079	0.0274795	0.0225978	0.124921	0.123904
chr2	144462530	144462627	1241225	0	-	0.329897	(0.32,0.35]	chr2	131710	3	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	ZEB2	ENSG00000169554.23	ENST00000636471.1:ENST00000627532.3:ENST00000638128.1:ENST00000637304.1:ENST00000636179.1:ENST00000636820.1:ENST00000419938.5:ENST00000409487.7:ENST00000636732.2:ENST00000636026.2:ENST00000675069.1:ENST00000689298.1:ENST00000539609.7:ENST00000558170.6:ENST00000303660.8:ENST00000427902.5:ENST00000637267.2:ENST00000392861.6:ENST00000431672.4:ENST00000409211.5:ENST00000465308.5:ENST00000434448.5:ENST00000472146.5:ENST00000461784.3:ENST00000476394.5:ENST00000637591.2:ENST00000479735.1:ENST00000453352.5:ENST00000435831.5:ENST00000444559.5:ENST00000630572.2:ENST00000628473.1:ENST00000484313.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	92	2	2.15243	2.15671	2.16099	0.0127227	0.0057293	0.0926667	0.0681402
chr22	38389751	38389850	7587755	0	-	0.444444	(0.44,0.476]	chr22	776703	10	INTRON	INTRON	TPTEP2	ENSG00000244627.5	ENST00000428294.5:ENST00000407491.6:ENST00000443042.5:ENST00000457665.5:ENST00000381645.7:ENST00000443658.5:ENST00000455209.5:ENST00000454577.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	6	69	2	2.12992	2.1566799999999997	2.18344	0.010975	0.0102102	0.092635	0.0850389
chr11	47170925	47171025	4948846	0	-	0.42	(0.408,0.44]	chr11	463894	1	SS5_PROX	SS5_PROX:INTRON	ARFGAP2	ENSG00000149182.15	ENST00000426335.6:ENST00000627920.2:ENST00000524782.6:ENST00000395449.7:ENST00000533243.5:ENST00000527776.5:ENST00000526342.5:ENST00000527927.5:ENST00000532478.5:ENST00000532438.5:ENST00000529455.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	11	122	2	1.80815	2.156675	2.5052	0.0109379	5.05909e-4	0.0873034	0.0202328
chr1	28936959	28937059	59180	0	+	0.4	(0.378,0.408]	chr1	7621	218	INTRON	INTRON	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000647918.1:ENST00000646800.1:ENST00000644342.1:ENST00000646189.1:ENST00000482464.6:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000646260.1:ENST00000373798.5:ENST00000644600.1:ENST00000649674.1:ENST00000643173.1:ENST00000343067.9:ENST00000644780.1:ENST00000650265.1:ENST00000648181.1:ENST00000643604.1:ENST00000648891.1:ENST00000373797.2:ENST00000349460.9:ENST00000645184.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	72	2	2.14029	2.156625	2.17296	0.0110512	0.0106742	0.0917199	0.0873897
chr1	51737759	51737858	100606	0	+	0.30303	(0.28,0.32]	chr1	13276	73	INTRON	INTRON	OSBPL9	ENSG00000117859.19	ENST00000371714.5:ENST00000428468.6:ENST00000447887.5:ENST00000495776.5:ENST00000435274.6:ENST00000453295.5:ENST00000489990.5:ENST00000484890.5:ENST00000532975.5:ENST00000534040.5:ENST00000527631.5:ENST00000531828.5:ENST00000361556.9:ENST00000473207.6:ENST00000533884.5:ENST00000481937.5:ENST00000526917.5:ENST00000462759.5:ENST00000486942.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	54	2	1.85772	2.1565849999999998	2.45545	0.0438092	0.0300199	0.14901	0.142135
chr6	110880315	110880414	2938999	0	+	0.282828	(0.28,0.32]	chr6	276765	43	INTRON	INTRON	AMD1	ENSG00000123505.19	ENST00000451850.6:ENST00000675380.1:ENST00000368882.8:ENST00000672937.2:ENST00000368885.8:ENST00000368877.9:ENST00000368876.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	54	2	1.85772	2.1565849999999998	2.45545	0.0438092	0.0300199	0.14901	0.142135
chr11	8980766	8980866	4907510	0	-	0.39	(0.378,0.408]	chr11	459937	7	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	NRIP3	ENSG00000175352.12	ENST00000696748.1:ENST00000696747.1:ENST00000309166.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	37	2	2.13703	2.156555	2.17608	0.0797592	0.0218783	0.19979	0.123836
chr15	44465880	44465980	6014735	0	+	0.39	(0.378,0.408]	chr15	572922	63	INTRON	INTRON	CTDSPL2	ENSG00000137770.14	ENST00000558791.5:ENST00000260327.9:ENST00000560834.1:ENST00000558966.5:ENST00000559793.5:ENST00000558968.1:ENST00000558373.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	37	2	2.13703	2.156555	2.17608	0.0797592	0.0218783	0.19979	0.123836
chr1	161508263	161508359	235113	0	+	0.458333	(0.44,0.476]	chr1	28321	12	INTRON	INTRON	FCGR2A	ENSG00000143226.15	ENST00000367972.8:ENST00000467654.1:ENST00000271450.12:ENST00000483665.6:ENST00000536731.5:ENST00000467525.5:ENST00000471026.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	35	2	1.93084	2.1565149999999997	2.38219	0.045456	0.0443175	0.162302	0.149888
chr1	235447870	235447967	663875	0	-	0.463918	(0.44,0.476]	chr1	78564	8	UTR3	UTR3:EXON_MRNA	B3GALNT2	ENSG00000162885.14	ENST00000366600.8	protein_coding	protein_coding	protein_coding	protein_coding	3	35	2	1.93084	2.1565149999999997	2.38219	0.045456	0.0443175	0.162302	0.149888
chr8	129564329	129564429	4060930	0	-	0.33	(0.32,0.35]	chr8	369672	72	INTRON	INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1:ENST00000676273.1:ENST00000667643.1:ENST00000668791.1:ENST00000663716.1:ENST00000663572.1:ENST00000676148.1:ENST00000667962.1:ENST00000674877.1:ENST00000675316.1:ENST00000674656.1:ENST00000446592.7:ENST00000667341.1:ENST00000675186.1:ENST00000652971.1:ENST00000661447.1:ENST00000674863.1:ENST00000675498.1:ENST00000675527.1:ENST00000676108.1:ENST00000657647.1:ENST00000675589.1:ENST00000675913.1:ENST00000675109.1:ENST00000671632.1:ENST00000671311.1:ENST00000676099.1:ENST00000660652.1:ENST00000675522.1:ENST00000675044.1:ENST00000675435.1:ENST00000674639.1:ENST00000676069.1:ENST00000675532.1:ENST00000674762.1:ENST00000523151.6:ENST00000675948.1:ENST00000665364.1:ENST00000657251.1:ENST00000675166.1:ENST00000674883.1:ENST00000675867.1:ENST00000674580.1:ENST00000675393.1:ENST00000520048.1:ENST00000674906.1:ENST00000676030.1:ENST00000670588.1:ENST00000675072.1:ENST00000664936.1:ENST00000652914.1:ENST00000657069.1:ENST00000674882.1	lncRNA	lncRNA	lncRNA	lncRNA	17	222	2	2.15343	2.15649	2.15955	0.00149756	0.00110711	0.0351496	0.0304981
chr11	105401359	105401459	5029234	0	-	0.47	(0.44,0.476]	chr11	474017	1327	INTRON	INTRON	CARD18	ENSG00000255501.3	ENST00000649856.1:ENST00000528811.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	35	2	1.85146	2.156405	2.46135	0.0545846	0.0374637	0.182529	0.140008
chr3	48709027	48709124	1689621	0	-	0.463918	(0.44,0.476]	chr3	172860	4	INTRON	INTRON	IP6K2	ENSG00000068745.15	ENST00000328631.10:ENST00000449563.5:ENST00000413654.5:ENST00000443853.5:ENST00000437427.5:ENST00000412850.5:ENST00000454335.5:ENST00000340879.8:ENST00000432678.6:ENST00000433104.2:ENST00000416707.1:ENST00000431721.6:ENST00000449610.5:ENST00000413298.5:ENST00000450045.5:ENST00000446860.5:ENST00000455545.5:ENST00000412795.5:ENST00000417896.1:ENST00000443964.1:ENST00000436134.5:ENST00000440424.5:ENST00000434860.1:ENST00000424035.1:ENST00000476645.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	35	2	1.85146	2.156405	2.46135	0.0545846	0.0374637	0.182529	0.140008
chr6	136287829	136287927	3231108	0	-	0.520408	(0.515,0.57]	chr6	300408	48	INTRON	INTRON	BCLAF1	ENSG00000029363.17	ENST00000640069.1:ENST00000531224.6:ENST00000353331.8:ENST00000527536.5:ENST00000527613.5:ENST00000530767.5:ENST00000527759.5:ENST00000534269.5:ENST00000532384.5:ENST00000530429.5:ENST00000628517.2:ENST00000529826.5:ENST00000528229.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	49	2	1.91916	2.156335	2.39351	0.0231902	0.0100431	0.118148	0.0881096
chr12	47702487	47702587	5317194	0	-	0.48	(0.476,0.515]	chr12	505941	4	SS5_PROX	SS5_PROX:INTRON	RPAP3	ENSG00000005175.10	ENST00000005386.8:ENST00000432584.7:ENST00000380650.4:ENST00000547706.1:ENST00000551293.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	42	2	1.68092	2.1563	2.63168	0.0474026	0.0237106	0.169265	0.118716
chr3	122712329	122712428	1489139	0	+	0.494949	(0.476,0.515]	chr3	155598	37	INTRON	INTRON	PARP14	ENSG00000173193.15	ENST00000474629.7:ENST00000649945.1:ENST00000460683.1:ENST00000474669.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	42	2	1.68092	2.1563	2.63168	0.0474026	0.0237106	0.169265	0.118716
chr7	1441814	1441908	3462095	0	-	0.617021	(0.57,1]	chr7	323678	13	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	MICALL2	ENSG00000164877.19	ENST00000472100.5:ENST00000297508.8:ENST00000413446.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	53	2	2.02689	2.1563	2.28571	0.00839052	0.00125922	0.0823837	0.0323898
chr9	36654360	36654459	4117299	0	+	0.50505	(0.476,0.515]	chr9	375312	21	INTRON	INTRON	MELK	ENSG00000165304.8	ENST00000543751.5:ENST00000536860.5:ENST00000541717.4:ENST00000536329.5:ENST00000627766.2:ENST00000298048.7:ENST00000536987.5:ENST00000545008.5:ENST00000626154.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	42	2	1.68092	2.1563	2.63168	0.0474026	0.0237106	0.169265	0.118716
chr7	128461900	128462000	3406913	0	+	0.26	[0,0.28]	chr7	318259	36	INTRON	INTRON	ENSG00000273184	ENSG00000273184.1	ENST00000462662.1	lncRNA	lncRNA	lncRNA	lncRNA	4	61	2	1.66929	2.15619	2.64309	0.0537506	0.0308646	0.180803	0.13151
chr4	184709771	184709871	2304643	0	-	0.27	[0,0.28]	chr4	222922	3	SS5_PROX	SS5_PROX:INTRON	CENPU	ENSG00000151725.12	ENST00000281453.10:ENST00000510146.5:ENST00000506535.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	61	2	1.62313	2.156155	2.68918	0.0605286	0.0275571	0.191883	0.123904
chr1	1752607	1752706	361456	0	-	0.646465	(0.57,1]	chr1	42148	15	UTR3	UTR3:EXON_MRNA	NADK	ENSG00000008130.15	ENST00000378625.5:ENST00000341991.7:ENST00000341426.9:ENST00000342348.9	protein_coding	protein_coding	protein_coding	protein_coding	5	26	2	1.52818	2.156135	2.78409	0.0508101	0.0116033	0.175989	0.0889104
chr10	17666910	17667009	4399494	0	+	0.313131	(0.28,0.32]	chr10	406156	60	INTRON	INTRON	STAM	ENSG00000136738.15	ENST00000377524.8:ENST00000377500.1:ENST00000445846.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	63	2	1.79739	2.156135	2.51488	0.0380957	0.0224995	0.141678	0.124921
chr15	68181604	68181693	6057243	0	+	0.337079	(0.32,0.35]	chr15	576625	3	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	PIAS1	ENSG00000033800.14	ENST00000249636.11:ENST00000545237.1:ENST00000567417.1:ENST00000563996.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	93	2	1.74705	2.156125	2.5652	0.0128435	0.00765724	0.0990564	0.075364
chr22	20093585	20093675	7478370	0	+	0.6	(0.57,1]	chr22	762734	3	INTRON	INTRON	DGCR8	ENSG00000128191.16	ENST00000383024.6:ENST00000351989.8:ENST00000495826.5:ENST00000407755.1:ENST00000498171.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	27	2	1.64415	2.15608	2.66801	0.0342575	0.0169968	0.135558	0.110899
chr6	35355841	35355941	2852111	0	+	0.46	(0.44,0.476]	chr6	269491	83	INTRON	INTRON	PPARD	ENSG00000112033.14	ENST00000418635.6:ENST00000448077.6:ENST00000360694.8:ENST00000311565.4:ENST00000337400.6	protein_coding	protein_coding	protein_coding	protein_coding	8	88	2	1.84794	2.15608	2.46422	0.0127847	0.00282908	0.0926667	0.0491595
chr19	54107377	54107472	7098561	0	+	0.484211	(0.476,0.515]	chr19	711818	6	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	NDUFA3	ENSG00000170906.16	ENST00000419113.5:ENST00000485876.6:ENST00000391764.7:ENST00000422029.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	47	2	1.99197	2.15599	2.32001	0.039572	0.0136217	0.143072	0.101682
chr12	76772780	76772879	5173933	0	+	0.59596	(0.57,1]	chr12	490065	32	INTRON	INTRON	ZDHHC17	ENSG00000186908.15	ENST00000546778.5:ENST00000426126.7:ENST00000552453.5:ENST00000547620.5:ENST00000550876.1:ENST00000547604.1:ENST00000551407.5:ENST00000550163.5:ENST00000549682.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	30	2	1.74185	2.1559049999999997	2.56996	0.0401765	0.00499145	0.143911	0.0646039
chr19	28531502	28531602	7166410	0	-	0.33	(0.32,0.35]	chr19	724189	633	INTRON	INTRON	ENSG00000283403:ENSG00000267243	ENSG00000283403.1:ENSG00000267243.6	ENST00000592347.5:ENST00000593065.5	lncRNA	lncRNA	lncRNA	lncRNA	16	200	2	2.1089	2.15586	2.20282	0.00263852	8.82243e-4	0.0458682	0.0270908
chr4	23016687	23016787	1928289	0	+	0.34	(0.32,0.35]	chr4	193937	114	INTRON	INTRON	ENSG00000248837	ENSG00000248837.7	ENST00000659942.1:ENST00000655325.1:ENST00000655182.1:ENST00000660103.1:ENST00000506425.2:ENST00000652324.1:ENST00000653008.1:ENST00000654546.1:ENST00000666412.1:ENST00000511453.5:ENST00000667179.1:ENST00000655768.1:ENST00000661585.1:ENST00000660296.1:ENST00000663529.1:ENST00000653872.1:ENST00000660370.1:ENST00000667156.1:ENST00000658109.1:ENST00000653188.1:ENST00000662431.1:ENST00000654588.1:ENST00000666579.1:ENST00000503017.2:ENST00000665739.1:ENST00000671537.1:ENST00000663348.1	lncRNA	lncRNA	lncRNA	lncRNA	3	41	2	2.07985	2.1558349999999997	2.23182	0.068598	0.0303092	0.184298	0.143025
chr4	126548414	126548514	2236193	0	-	0.33	(0.32,0.35]	chr4	219023	829	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	3	41	2	2.07985	2.1558349999999997	2.23182	0.068598	0.0303092	0.184298	0.143025
chr21	6661366	6661466	7425787	0	-	0.41	(0.408,0.44]	chr21	757499	14	INTRON	INTRON	ENSG00000280145	ENSG00000280145.3	ENST00000625185.3:ENST00000624846.3:ENST00000623313.1:ENST00000624965.1	lncRNA	lncRNA	lncRNA	lncRNA	41	435	2	1.84462	2.15578	2.46694	5.8554e-4	5.39772e-5	0.0220073	0.00647827
chr7	6468205	6468304	3478205	0	-	0.373737	(0.35,0.378]	chr7	325458	15	INTRON	INTRON	DAGLB:KDELR2	ENSG00000164535.15:ENSG00000136240.10	ENST00000436575.5:ENST00000463747.1:ENST00000258739.9:ENST00000454368.2:ENST00000490996.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	9	78	2	1.47445	2.15577	2.83709	0.0223543	0.01435	0.124687	0.0966737
chr5	34179894	34179994	2599883	0	-	0.58	(0.57,1]	chr5	247047	4	INTRON	INTRON	GUSBP18	ENSG00000215158.9	ENST00000514048.5:ENST00000507274.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	5	30	2	1.92756	2.155735	2.38391	0.0220439	0.0104374	0.115395	0.0902296
chr18	73235521	73235621	6988328	0	-	0.42	(0.408,0.44]	chr18	691704	344	INTRON	INTRON	LINC02864	ENSG00000263711.6	ENST00000584544.5:ENST00000581011.5:ENST00000581862.6:ENST00000669547.1:ENST00000661525.1:ENST00000583405.5	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	12	119	2	1.88723	2.155635	2.42404	0.00413548	0.00284218	0.0566868	0.0493576
chr4	139397114	139397214	2050675	0	+	0.5	(0.476,0.515]	chr4	203414	30	INTRON	INTRON	NAA15	ENSG00000164134.13	ENST00000515576.1	protein_coding	protein_coding	protein_coding	protein_coding	4	44	2	1.7425	2.15559	2.56868	0.0417334	0.0256676	0.147007	0.133676
chr5	82061791	82061891	2403602	0	+	0.39	(0.378,0.408]	chr5	232122	28	INTRON	INTRON	ATG10	ENSG00000152348.16	ENST00000282185.8:ENST00000355178.8:ENST00000458350.7:ENST00000513443.5:ENST00000504770.5:ENST00000513634.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	38	2	1.94681	2.155545	2.36428	0.0457723	0.0441088	0.162255	0.149888
chr5	95768666	95768749	2431627	0	+	0.39759	(0.378,0.408]	chr5	233682	1	INTRON	INTRON	RHOBTB3	ENSG00000164292.13	ENST00000379982.8:ENST00000504179.5:ENST00000510313.1	protein_coding	protein_coding	protein_coding	protein_coding	3	38	2	1.94681	2.155545	2.36428	0.0457723	0.0441088	0.162255	0.149888
chr15	92901574	92901674	6103701	0	+	0.36	(0.35,0.378]	chr15	581388	3	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ENSG00000279765:CHD2	ENSG00000279765.3:ENSG00000173575.22	ENST00000629685.2:ENST00000630790.1:ENST00000626874.2:ENST00000627622.1:ENST00000394196.9:ENST00000635856.1:ENST00000420239.7:ENST00000628375.2:ENST00000629346.2:ENST00000625990.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	16	193	2	1.77869	2.1554450000000003	2.5322	0.00840321	1.18093e-4	0.0775927	0.00930884
chr2	55379980	55380080	1123992	0	-	0.47	(0.44,0.476]	chr2	120560	47	INTRON	INTRON	CCDC88A	ENSG00000115355.18	ENST00000263630.13:ENST00000436346.7:ENST00000336838.10:ENST00000642200.1:ENST00000413716.7:ENST00000643413.1:ENST00000647401.1:ENST00000645311.1:ENST00000646796.1:ENST00000645571.1:ENST00000645477.1:ENST00000645072.1:ENST00000644890.1:ENST00000644630.1:ENST00000647098.1:ENST00000646324.1:ENST00000642890.1:ENST00000647517.1:ENST00000645031.1:ENST00000645484.1:ENST00000645529.1:ENST00000644033.1:ENST00000644193.1:ENST00000645168.1:ENST00000647341.1:ENST00000430086.1:ENST00000644127.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	49	2	1.70242	2.15508	2.60774	0.0282713	0.0255874	0.137721	0.120269
chr6	17644781	17644879	3065578	0	-	0.55102	(0.515,0.57]	chr6	284800	44	INTRON	INTRON	NUP153	ENSG00000124789.12	ENST00000613258.4:ENST00000537253.5:ENST00000262077.3	protein_coding	protein_coding	protein_coding	protein_coding	7	67	2	1.73313	2.15505	2.57697	0.0258496	0.00153959	0.121322	0.0362709
chr6	140171281	140171381	2968168	0	+	0.54	(0.515,0.57]	chr6	279015	222	INTRON	INTRON	ENSG00000288714	ENSG00000288714.1	ENST00000683950.1	lncRNA	lncRNA	lncRNA	lncRNA	6	57	2	1.5060500000000001	2.155025	2.804	0.0511812	0.00215855	0.176696	0.0417866
chr1	28938459	28938559	59195	0	+	0.18	[0,0.28]	chr1	7621	233	INTRON	INTRON	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000647918.1:ENST00000646800.1:ENST00000644342.1:ENST00000646189.1:ENST00000482464.6:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000646260.1:ENST00000373798.5:ENST00000644600.1:ENST00000649674.1:ENST00000643173.1:ENST00000343067.9:ENST00000644780.1:ENST00000650265.1:ENST00000648181.1:ENST00000643604.1:ENST00000648891.1:ENST00000373797.2:ENST00000349460.9:ENST00000645184.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	99	2	2.02265	2.154995	2.28734	0.0449017	0.00414216	0.149888	0.0589205
chr14	30559791	30559887	5674391	0	+	0.354167	(0.35,0.378]	chr14	540495	6	UTR5	UTR5:EXON_MRNA:INTRON	G2E3	ENSG00000092140.16	ENST00000206595.11:ENST00000438909.6:ENST00000544007.5:ENST00000550944.5:ENST00000552488.1:ENST00000648008.1:ENST00000553504.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	63	2	1.98929	2.15495	2.32061	0.0417909	0.00545884	0.147075	0.0669938
chrX	19352292	19352388	7629274	0	+	0.5625	(0.515,0.57]	chrX	781175	5	INTRON	INTRON	PDHA1	ENSG00000131828.14	ENST00000540249.5:ENST00000696704.1:ENST00000696705.1:ENST00000422285.7:ENST00000423505.6:ENST00000355808.10:ENST00000379805.4:ENST00000417819.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	62	2	1.54678	2.15489	2.763	0.0324987	0.00257143	0.145164	0.045134
chr1	171508063	171508163	253440	0	+	0.34	(0.32,0.35]	chr1	30096	220	INTRON	INTRON	PRRC2C	ENSG00000117523.18	ENST00000647382.2:ENST00000367742.7:ENST00000476522.5:ENST00000338920.8:ENST00000467601.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	100	2	1.61555	2.15488	2.69421	0.0165587	0.00484681	0.110511	0.0605691
chr19	2233641	2233740	7115720	0	-	0.545455	(0.515,0.57]	chr19	715285	6	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	PLEKHJ1	ENSG00000104886.12	ENST00000587394.6:ENST00000587962.6:ENST00000326631.7:ENST00000591099.6:ENST00000589097.6:ENST00000588450.1:ENST00000589791.5:ENST00000588633.1:ENST00000588545.2:ENST00000586608.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	21	194	2	1.57059	2.15488	2.73917	0.00625844	2.91357e-5	0.0720609	0.00449258
chr22	19949465	19949563	7477478	0	+	0.306122	(0.28,0.32]	chr22	762560	16	INTRON	INTRON	COMT	ENSG00000093010.15	ENST00000676678.1:ENST00000403184.5:ENST00000361682.11:ENST00000403710.5:ENST00000407537.5:ENST00000467943.5:ENST00000678868.1:ENST00000678769.1:ENST00000428707.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	64	2	1.83771	2.15487	2.47203	0.0591725	0.0114089	0.189982	0.0886611
chr11	86061461	86061561	5014767	0	-	0.33	(0.32,0.35]	chr11	473022	295	INTRON	INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000630913.2:ENST00000528398.5:ENST00000356360.9:ENST00000534412.5:ENST00000531558.1:ENST00000531930.5:ENST00000532041.5:ENST00000525162.5:ENST00000528256.1:ENST00000528411.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	15	162	2	1.77075	2.1547799999999997	2.53881	0.00355059	0.00317745	0.0547657	0.0503705
chr3	138559726	138559826	1829288	0	-	0.27	[0,0.28]	chr3	183871	220	INTRON	INTRON	CEP70	ENSG00000114107.9	ENST00000264982.8:ENST00000489254.5:ENST00000484888.5:ENST00000474781.5:ENST00000481834.5:ENST00000468900.5:ENST00000462419.5:ENST00000478673.5:ENST00000464035.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	61	2	1.71402	2.15475	2.59548	0.047753	0.0346067	0.170327	0.136649
chr1	151614285	151614375	225742	0	+	0.377778	(0.35,0.378]	chr1	25859	5	EXON_LNCRNA	EXON_LNCRNA:INTRON	SNX27	ENSG00000143376.14	ENST00000642376.1:ENST00000368843.8:ENST00000458013.7:ENST00000368841.7:ENST00000642479.1:ENST00000642349.1:ENST00000643179.1:ENST00000643814.1:ENST00000642582.1:ENST00000644970.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	86	2	2.03027	2.154465	2.27866	0.0185322	0.00316333	0.108861	0.0516574
chr7	74517445	74517541	3334296	0	+	0.5625	(0.515,0.57]	chr7	310197	15	INTRON	INTRON	GTF2IRD1	ENSG00000006704.11	ENST00000265755.7:ENST00000424337.7:ENST00000455841.6:ENST00000476977.5:ENST00000489094.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	60	2	1.94493	2.154465	2.364	0.0204583	0.00447856	0.122204	0.0593175
chr9	131394962	131395062	4216978	0	+	0.47	(0.44,0.476]	chr9	386720	3	INTRON	INTRON	PRRC2B	ENSG00000288701.1	ENST00000682525.1:ENST00000684596.1:ENST00000683519.1:ENST00000682501.1	protein_coding	protein_coding	protein_coding	protein_coding	12	118	2	1.51294	2.1544600000000003	2.79598	0.0181562	5.82325e-4	0.10754	0.0219289
chr1	6539132	6539232	367964	0	-	0.4	(0.378,0.408]	chr1	43209	53	INTRON	INTRON	NOL9	ENSG00000162408.11	ENST00000377705.6:ENST00000464383.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	37	2	1.76032	2.154405	2.54849	0.0721577	0.0273196	0.187433	0.136494
chr1	168032998	168033097	249467	0	+	0.282828	(0.28,0.32]	chr1	29620	91	INTRON	INTRON	DCAF6	ENSG00000143164.16	ENST00000432587.6:ENST00000367843.7:ENST00000367840.4:ENST00000312263.10	protein_coding	protein_coding	protein_coding	protein_coding	9	128	2	2.11048	2.1543349999999997	2.19819	0.00956764	0.00307394	0.0820838	0.0510029
chr5	146143955	146144050	2747006	0	-	0.452632	(0.44,0.476]	chr5	258817	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	LARS1	ENSG00000133706.19	ENST00000674174.1:ENST00000674170.1:ENST00000674479.1:ENST00000674309.1:ENST00000674218.1:ENST00000674467.1:ENST00000674290.1:ENST00000674447.1:ENST00000674270.1:ENST00000674383.1:ENST00000674191.1:ENST00000674158.1:ENST00000506231.6:ENST00000674471.1:ENST00000394434.7:ENST00000674398.1:ENST00000674277.1:ENST00000274562.13:ENST00000510191.5:ENST00000504323.6:ENST00000674310.1:ENST00000512412.2:ENST00000508667.5:ENST00000507095.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	19	207	2	2.08798	2.15427	2.22056	0.00115606	4.70107e-4	0.0310855	0.0196294
chr4	78802979	78803078	1981651	0	+	0.515152	(0.476,0.515]	chr4	198463	259	INTRON	INTRON	BMP2K	ENSG00000138756.19	ENST00000389010.7:ENST00000502613.3:ENST00000502871.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	68	2	2.05714	2.15426	2.25138	0.0156961	0.00692374	0.101453	0.0753208
chr22	20941827	20941927	7480762	0	+	0.41	(0.408,0.44]	chr22	763096	72	INTRON	INTRON	CRKL	ENSG00000099942.13	ENST00000354336.8:ENST00000411769.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	67	2	2.11447	2.154225	2.19398	0.0285207	0.0043348	0.12666	0.0600652
chr11	3867145	3867245	4723576	0	+	0.43	(0.408,0.44]	chr11	437121	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	STIM1	ENSG00000167323.12	ENST00000525403.5:ENST00000526596.2:ENST00000300737.8:ENST00000616714.4:ENST00000527651.5:ENST00000532610.5	protein_coding	protein_coding	protein_coding	protein_coding	3	36	2	1.81572	2.15415	2.49258	0.0626779	0.0314608	0.175915	0.144381
chr14	102680294	102680394	5823410	0	+	0.34	(0.32,0.35]	chr14	552490	866	INTRON	INTRON	RCOR1	ENSG00000089902.10	ENST00000262241.7	protein_coding	protein_coding	protein_coding	protein_coding	4	50	2	1.93031	2.154125	2.37794	0.0498601	0.0231421	0.156383	0.126939
chr19	21735583	21735683	7158978	0	-	0.36	(0.35,0.378]	chr19	723706	72	INTRON	INTRON	ZNF100	ENSG00000197020.12	ENST00000358296.11:ENST00000305570.10:ENST00000594401.1	protein_coding	protein_coding	protein_coding	protein_coding	4	47	2	1.5118	2.154115	2.79643	0.0789277	0.013543	0.198963	0.101363
chr2	241682149	241682227	1349390	0	-	0.384615	(0.378,0.408]	chr2	141802	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	DTYMK	ENSG00000168393.13	ENST00000400770.6:ENST00000305784.7:ENST00000445261.5:ENST00000432348.5:ENST00000420144.1:ENST00000493095.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	68	2	2.04798	2.154035	2.26009	0.0188651	0.00809949	0.108861	0.0808864
chr16	21877942	21878041	6462023	0	-	0.363636	(0.35,0.378]	chr16	623467	118	INTRON	INTRON	NPIPB4	ENSG00000185864.18	ENST00000543449.1:ENST00000538859.1	protein_coding	processed_transcript	protein_coding	processed_transcript	18	215	2	2.06336	2.15401	2.24466	0.00197019	4.6808e-4	0.0402574	0.0196039
chr2	61534422	61534518	1131194	0	-	0.572917	(0.57,1]	chr2	121645	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	XPO1	ENSG00000082898.19	ENST00000676553.1:ENST00000677556.1:ENST00000677814.1:ENST00000676771.1:ENST00000677803.1:ENST00000677239.1:ENST00000678790.1:ENST00000677928.1:ENST00000678182.1:ENST00000677150.1:ENST00000678172.1:ENST00000678360.1:ENST00000678081.1:ENST00000676889.1:ENST00000676783.1:ENST00000679035.1:ENST00000677422.1:ENST00000677417.1:ENST00000677813.1:ENST00000676999.1:ENST00000676667.1:ENST00000678263.1:ENST00000678877.1:ENST00000401558.7:ENST00000428210.5:ENST00000677290.1:ENST00000677850.1:ENST00000451765.6:ENST00000676789.1:ENST00000678741.1:ENST00000404992.6:ENST00000406957.5:ENST00000443240.5:ENST00000420673.6:ENST00000481214.1:ENST00000449444.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	36	2	2.02391	2.153805	2.2837	0.0339274	0.00256797	0.134508	0.0466761
chr12	124779585	124779685	5445722	0	-	0.31	(0.28,0.32]	chr12	521214	6	INTRON	INTRON	SCARB1	ENSG00000073060.17	ENST00000339570.9:ENST00000261693.11:ENST00000679605.1:ENST00000681686.1:ENST00000680926.1:ENST00000680556.1:ENST00000680982.1:ENST00000680596.1:ENST00000681555.1:ENST00000681788.1:ENST00000415380.6:ENST00000681117.1:ENST00000681499.1:ENST00000545305.1:ENST00000538291.5:ENST00000546215.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	18	233	2	2.01712	2.15379	2.29046	0.00310972	0.00102725	0.0498063	0.0294094
chr16	84720904	84721004	6410112	0	+	0.55	(0.515,0.57]	chr16	615272	40	INTRON	INTRON	USP10	ENSG00000103194.16	ENST00000562743.5:ENST00000540269.6:ENST00000563892.5:ENST00000562092.1:ENST00000569511.5:ENST00000219473.12:ENST00000570191.5:ENST00000563048.5:ENST00000562283.5:ENST00000563386.5:ENST00000569038.5:ENST00000570053.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	17	135	2	1.20165	2.15379	3.10593	0.0343409	2.50623e-5	0.135799	0.00392664
chr15	27129687	27129787	5983740	0	+	0.34	(0.32,0.35]	chr15	569164	1025	INTRON	INTRON	GABRG3	ENSG00000182256.13	ENST00000615808.5:ENST00000555083.5	protein_coding	protein_coding	protein_coding	protein_coding	7	92	2	2.06533	2.153785	2.24224	0.0174225	0.00393422	0.10453	0.0572563
chr7	92827493	92827593	3573170	0	-	0.42	(0.408,0.44]	chr7	332810	523	INTRON	INTRON	CDK6	ENSG00000105810.10	ENST00000424848.3:ENST00000265734.8	protein_coding	protein_coding	protein_coding	protein_coding	6	69	2	2.08486	2.1537699999999997	2.22268	0.0145898	0.00770925	0.0981689	0.0784002
chr1	171498096	171498196	253340	0	+	0.4	(0.378,0.408]	chr1	30096	120	INTRON	INTRON	PRRC2C	ENSG00000117523.18	ENST00000647382.2:ENST00000367742.7:ENST00000476522.5:ENST00000338920.8:ENST00000467601.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	62	2	1.46085	2.15374	2.84663	0.0343503	0.0133954	0.147468	0.0946278
chr6	17674704	17674804	3065886	0	-	0.44	(0.408,0.44]	chr6	284853	4	SS5_PROX	SS5_PROX:INTRON	NUP153	ENSG00000124789.12	ENST00000613258.4:ENST00000537253.5:ENST00000262077.3	protein_coding	protein_coding	protein_coding	protein_coding	9	97	2	1.73381	2.1537300000000004	2.57365	0.0145181	0.00172241	0.0977607	0.0383099
chr1	36056742	36056842	72428	0	+	0.51	(0.476,0.515]	chr1	9249	11	UTR3	UTR3:EXON_MRNA	AGO3	ENSG00000126070.20	ENST00000373191.9	protein_coding	protein_coding	protein_coding	protein_coding	14	153	2	2.13855	2.15367	2.16879	0.00158904	0.00140891	0.0364097	0.0344604
chr1	247200875	247200967	684005	0	-	0.282609	(0.28,0.32]	chr1	80197	3	INTRON	INTRON	ZNF731P	ENSG00000227671.4	ENST00000421406.1:ENST00000606173.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	13	136	2	1.27	2.153655	3.03731	0.035139	0.0014867	0.149985	0.035
chr3	47765237	47765336	1684910	0	-	0.353535	(0.35,0.378]	chr3	172116	189	INTRON	INTRON	SMARCC1	ENSG00000173473.11	ENST00000254480.10:ENST00000425518.5:ENST00000454240.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	79	2	1.78333	2.15364	2.52395	0.0148511	0.00824736	0.106937	0.0773378
chr12	109567167	109567267	5407312	0	-	0.34	(0.32,0.35]	chr12	516158	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	MMAB	ENSG00000139428.12	ENST00000545712.7:ENST00000540016.5:ENST00000537496.5:ENST00000544051.5:ENST00000541763.6:ENST00000542390.5:ENST00000420167.6:ENST00000503497.7:ENST00000536760.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	92	2	1.80306	2.153585	2.50411	0.0246393	0.00267989	0.12011	0.0478767
chr15	41368744	41368843	6005145	0	+	0.50505	(0.476,0.515]	chr15	571345	25	INTRON	INTRON	NUSAP1	ENSG00000137804.14	ENST00000668273.1:ENST00000260359.10:ENST00000558123.5:ENST00000414849.6:ENST00000450592.6:ENST00000559596.6:ENST00000560747.5:ENST00000560177.5:ENST00000557840.5:ENST00000560898.5:ENST00000560318.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	47	2	1.92984	2.153575	2.37731	0.0466474	0.0111793	0.151522	0.0937192
chr2	99479145	99479245	1189773	0	-	0.49	(0.476,0.515]	chr2	127721	138	INTRON	INTRON	REV1	ENSG00000135945.10	ENST00000393445.7:ENST00000258428.8:ENST00000413697.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	47	2	1.92984	2.153575	2.37731	0.0466474	0.0111793	0.151522	0.0937192
chr5	134201174	134201260	2726437	0	-	0.511628	(0.476,0.515]	chr5	256539	1	SS3_PROX	SS3_PROX:INTRON	PPP2CA	ENSG00000113575.10	ENST00000481195.6:ENST00000495833.1:ENST00000522385.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	47	2	1.92984	2.153575	2.37731	0.0466474	0.0111793	0.151522	0.0937192
chr7	101251694	101251794	3588219	0	-	0.53	(0.515,0.57]	chr7	334902	4	SS5_PROX	SS5_PROX:INTRON	FIS1	ENSG00000214253.9	ENST00000474120.5:ENST00000473527.5:ENST00000435848.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	49	2	2.08547	2.153565	2.22166	0.0289426	0.00735516	0.1274	0.0765982
chr6	157010603	157010703	3009499	0	+	0.35	(0.32,0.35]	chr6	281130	251	INTRON	INTRON	ARID1B	ENSG00000049618.24	ENST00000346085.10:ENST00000636930.2:ENST00000647938.1:ENST00000350026.10:ENST00000674298.1:ENST00000674190.1:ENST00000414678.7:ENST00000319584.11:ENST00000452544.2:ENST00000637887.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	43	2	1.99307	2.1535599999999997	2.31405	0.0517107	0.04271	0.176696	0.148082
chr3	186939060	186939159	1586258	0	+	0.464646	(0.44,0.476]	chr3	164314	73	INTRON	INTRON	ST6GAL1	ENSG00000073849.16	ENST00000676786.1:ENST00000463542.1:ENST00000169298.8:ENST00000457772.6:ENST00000455441.5:ENST00000427315.5:ENST00000677292.1:ENST00000468614.1:ENST00000458216.5:ENST00000430309.5:ENST00000417392.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	65	2	1.96805	2.15352	2.33899	0.0142027	0.0109533	0.0959987	0.0925675
chr20	47238274	47238370	7348313	0	-	0.291667	(0.28,0.32]	chr20	749266	11	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000467200.6:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000468376.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	132	2	1.44292	2.1534050000000002	2.86389	0.0385855	5.73871e-4	0.142656	0.0217493
chr1	112657535	112657634	186713	0	+	0.363636	(0.35,0.378]	chr1	20663	25	INTRON	INTRON	CAPZA1	ENSG00000116489.13	ENST00000476936.5:ENST00000263168.4:ENST00000498626.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	15	160	2	1.71412	2.153315	2.59251	0.00495173	0.00106431	0.0646039	0.0299199
chr1	225860047	225860144	645984	0	-	0.505155	(0.476,0.515]	chr1	76470	5	EXON_LNCRNA	EXON_LNCRNA:INTRON	TMEM63A	ENSG00000196187.12	ENST00000366835.8:ENST00000474478.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	99	2	1.81741	2.15329	2.48917	0.0141271	0.00110233	0.0959618	0.03038
chr4	70979691	70979791	1971284	0	+	0.28	[0,0.28]	chr4	197606	4	SS5_PROX	SS5_PROX:INTRON	MOB1B	ENSG00000173542.9	ENST00000309395.7:ENST00000396051.2:ENST00000511449.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	134	2	1.71434	2.15326	2.59218	0.0379383	0.00111742	0.141416	0.0306908
chr16	16510115	16510215	6310963	0	+	0.57	(0.515,0.57]	chr16	604098	101	INTRON	INTRON	ENSG00000260126	ENSG00000260126.2	ENST00000567465.2	lncRNA	lncRNA	lncRNA	lncRNA	7	67	2	1.94248	2.15324	2.364	0.0115668	0.00447856	0.0962115	0.0593175
chr7	105322866	105322966	3603245	0	-	0.54	(0.515,0.57]	chr7	336161	159	INTRON	INTRON	SRPK2	ENSG00000135250.17	ENST00000393651.8:ENST00000482897.5:ENST00000460391.5:ENST00000462282.5:ENST00000465112.5:ENST00000482862.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	49	2	1.81744	2.1532299999999998	2.48902	0.031028	0.00760558	0.143457	0.0749571
chr1	161768498	161768598	235867	0	+	0.38	(0.378,0.408]	chr1	28516	13	INTRON	INTRON	ATF6	ENSG00000118217.7	ENST00000680688.1:ENST00000679853.1:ENST00000681738.1:ENST00000681801.1:ENST00000681779.1:ENST00000367942.4:ENST00000681001.1:ENST00000679886.1:ENST00000681169.1:ENST00000681492.1:ENST00000680481.1:ENST00000680180.1:ENST00000681187.1:ENST00000680462.1:ENST00000680633.1:ENST00000681557.1:ENST00000681912.1:ENST00000679833.1:ENST00000681541.1:ENST00000681036.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	59	2	2.04622	2.153155	2.26009	0.0188651	0.0149927	0.108861	0.107704
chr2	74202461	74202559	813266	0	+	0.408163	(0.378,0.408]	chr2	90925	11	EXON_MRNA	EXON_MRNA:INTRON	MTHFD2	ENSG00000065911.13	ENST00000677997.1:ENST00000677170.1:ENST00000678684.1:ENST00000409804.5:ENST00000489041.2:ENST00000470592.5:ENST00000678955.1:ENST00000394053.7:ENST00000677377.1:ENST00000679055.1:ENST00000678340.1:ENST00000477455.5:ENST00000409601.1:ENST00000678228.1:ENST00000488086.1:ENST00000462026.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	59	2	2.04622	2.153155	2.26009	0.0188651	0.0149927	0.108861	0.107704
chrX	111697652	111697751	7702183	0	+	0.373737	(0.35,0.378]	chrX	788221	76	INTRON	INTRON	ALG13	ENSG00000101901.12	ENST00000487141.5:ENST00000394780.8:ENST00000251943.8:ENST00000610588.4:ENST00000621367.4:ENST00000622997.3:ENST00000624161.3:ENST00000636363.1:ENST00000624881.3:ENST00000495283.5:ENST00000486353.5:ENST00000623144.3:ENST00000470971.5:ENST00000623148.3:ENST00000471924.5:ENST00000436609.5:ENST00000470704.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	46	2	1.76773	2.153145	2.53856	0.0373863	0.0326077	0.155878	0.133687
chr16	50156657	50156757	6347581	0	+	0.47	(0.44,0.476]	chr16	609312	20	INTRON	INTRON	TENT4B	ENSG00000121274.14	ENST00000436909.8:ENST00000561678.7:ENST00000562717.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	51	2	1.56252	2.15312	2.74372	0.0465207	0.0153007	0.151387	0.108569
chr7	12403558	12403658	3485438	0	-	0.69	(0.57,1]	chr7	325972	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	VWDE	ENSG00000146530.15	ENST00000275358.8:ENST00000452576.6:ENST00000521169.5:ENST00000326715.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	60	2	1.4907	2.153095	2.81549	0.0154472	3.90081e-4	0.100909	0.0177751
chr17	70044425	70044525	6827889	0	-	0.34	(0.32,0.35]	chr17	674995	219	INTRON	INTRON	ENSG00000230258	ENSG00000230258.6	ENST00000435112.5:ENST00000587325.1	lncRNA	lncRNA	lncRNA	lncRNA	4	49	2	1.67393	2.153015	2.6321	0.0496128	0.0268	0.174685	0.123349
chr17	66329800	66329900	6662569	0	+	0.36	(0.35,0.378]	chr17	650320	233	INTRON	INTRON	PRKCA	ENSG00000154229.12	ENST00000413366.8:ENST00000578063.5:ENST00000583361.1:ENST00000284384.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	71	2	1.9392	2.152985	2.36677	0.0139343	0.0126486	0.0982897	0.0957526
chr6	43179962	43180058	2869856	0	+	0.635417	(0.57,1]	chr6	271845	9	UTR3	UTR3:EXON_MRNA	SRF	ENSG00000112658.8	ENST00000265354.6	protein_coding	protein_coding	protein_coding	protein_coding	31	168	2	2.04956	2.152965	2.25637	1.24097e-4	6.30149e-5	0.0100246	0.00658818
chr7	22705290	22705390	3500432	0	-	0.35	(0.32,0.35]	chr7	326683	399	INTRON	INTRON	STEAP1B	ENSG00000105889.16	ENST00000650428.1	protein_coding	processed_transcript	protein_coding	processed_transcript	4	49	2	1.61669	2.15295	2.68921	0.0578816	0.0230336	0.188651	0.118056
chr11	70422453	70422550	4821869	0	+	0.391753	(0.378,0.408]	chr11	449646	10	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	CTTN	ENSG00000085733.16	ENST00000346329.7:ENST00000301843.13:ENST00000376561.7:ENST00000527962.5:ENST00000498223.3:ENST00000525852.3:ENST00000393747.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	20	223	2	1.87153	2.1528650000000003	2.4342	0.00180448	3.47844e-4	0.039301	0.0173788
chr7	135933010	135933110	3649026	0	-	0.51	(0.476,0.515]	chr7	339202	26	INTRON	INTRON	MTPN	ENSG00000105887.11	ENST00000393085.4:ENST00000435723.1	protein_coding	protein_coding	protein_coding	protein_coding	7	78	2	1.71266	2.15285	2.59304	0.0293304	0.00158794	0.128055	0.0367961
chr2	231458620	231458715	1341759	0	-	0.347368	(0.32,0.35]	chr2	140511	1	EXON_MRNA	EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NCL	ENSG00000115053.17	ENST00000322723.9:ENST00000676514.1:ENST00000677703.1:ENST00000678828.1:ENST00000676798.1:ENST00000678246.1:ENST00000679348.1:ENST00000417652.6:ENST00000453992.6:ENST00000678729.1:ENST00000678849.1:ENST00000678405.1:ENST00000676913.1:ENST00000678131.1:ENST00000678364.1:ENST00000676690.1:ENST00000461347.5:ENST00000356936.6:ENST00000454824.6:ENST00000436894.2:ENST00000677786.1:ENST00000494618.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	67	2	1.8526	2.15283	2.45306	0.0332438	0.00916394	0.134145	0.0855292
chr19	897249	897342	7110767	0	-	0.623656	(0.57,1]	chr19	714137	9	UTR3	UTR3:EXON_MRNA	R3HDM4	ENSG00000198858.10	ENST00000589428.5:ENST00000361574.10:ENST00000587975.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	27	145	2	1.89906	2.152735	2.40641	4.86361e-4	3.54701e-5	0.0203917	0.00476421
chr2	8958842	8958942	1063119	0	-	0.54	(0.515,0.57]	chr2	113380	2	SS3_PROX	SS3_PROX:INTRON	MBOAT2	ENSG00000143797.12	ENST00000305997.8:ENST00000486484.5:ENST00000477073.5:ENST00000462696.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	56	2	1.62814	2.152735	2.67733	0.035203	0.00366712	0.150193	0.0535094
chr4	126714973	126715072	2237860	0	-	0.414141	(0.408,0.44]	chr4	219029	163	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	6	55	2	1.58622	2.152665	2.71911	0.0291748	0.0189489	0.141552	0.108861
chr1	32652660	32652759	65843	0	+	0.494949	(0.476,0.515]	chr1	8416	2	INTRON	INTRON	RBBP4	ENSG00000162521.19	ENST00000414241.7:ENST00000527118.5:ENST00000373493.10:ENST00000401893.7:ENST00000524393.5:ENST00000492348.6:ENST00000526193.5:ENST00000525506.1:ENST00000373485.5:ENST00000477563.6:ENST00000458695.6:ENST00000490500.5:ENST00000445722.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	87	2	1.81741	2.15265	2.48789	0.0141271	0.00256502	0.0959618	0.0466761
chr8	47929932	47930012	3945442	0	-	0.325	(0.32,0.35]	chr8	361896	2	CDS	CDS:EXON_MRNA	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7	protein_coding	protein_coding	protein_coding	protein_coding	12	155	2	1.94084	2.152575	2.36431	0.00594844	0.00127288	0.0674604	0.0331457
chr16	22495208	22495307	6322557	0	+	0.515152	(0.476,0.515]	chr16	605439	30	INTRON	INTRON	NPIPB5	ENSG00000243716.11	ENST00000415654.5:ENST00000415833.6:ENST00000546168.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	15	165	2	1.93264	2.15257	2.3725	0.00293211	5.6462e-4	0.0496505	0.021937
chr13	23373595	23373693	5560077	0	-	0.591837	(0.57,1]	chr13	531358	26	EXON_MRNA	EXON_MRNA:INTRON	SACS	ENSG00000151835.17	ENST00000683210.1:ENST00000684325.1:ENST00000682775.1:ENST00000684497.1:ENST00000402364.1:ENST00000682944.1:ENST00000382292.9:ENST00000455470.6:ENST00000423156.2:ENST00000683367.1:ENST00000684196.1:ENST00000683489.1:ENST00000684163.1:ENST00000684385.1:ENST00000683270.1:ENST00000683680.1:ENST00000683154.1:ENST00000684053.1:ENST00000682244.1:ENST00000682547.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	25	2	2.02391	2.15247	2.28103	0.0339274	0.0151554	0.134508	0.108535
chr17	82912189	82912289	6695849	0	+	0.62	(0.57,1]	chr17	655026	4	SS5_PROX	SS5_PROX:INTRON	TBCD	ENSG00000141556.22	ENST00000682479.1:ENST00000682722.1:ENST00000684464.1:ENST00000684544.1:ENST00000681983.1:ENST00000684361.1:ENST00000683184.1:ENST00000683282.1:ENST00000684408.1:ENST00000355528.9:ENST00000683444.1:ENST00000684776.1:ENST00000683041.1:ENST00000684760.1:ENST00000684349.1:ENST00000682213.1:ENST00000539345.6:ENST00000684000.1:ENST00000684188.1:ENST00000684429.1:ENST00000682610.1:ENST00000683821.1:ENST00000682654.1:ENST00000576160.6:ENST00000571712.5:ENST00000576996.5:ENST00000683584.1:ENST00000682099.1:ENST00000684559.1:ENST00000571316.5:ENST00000576760.5:ENST00000683839.1:ENST00000574975.5:ENST00000572953.5:ENST00000571796.5:ENST00000682315.1:ENST00000574422.1:ENST00000576677.6:ENST00000571618.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	25	2	2.02391	2.15247	2.28103	0.0339274	0.0151554	0.134508	0.108535
chr8	73970934	73971034	3972595	0	-	0.58	(0.57,1]	chr8	364300	3	SS3_PROX	SS3_PROX:INTRON	ELOC	ENSG00000154582.18	ENST00000602840.5:ENST00000518127.5:ENST00000520242.6:ENST00000687224.1:ENST00000622804.2:ENST00000685938.1:ENST00000520210.1:ENST00000284811.12:ENST00000519487.6:ENST00000522337.5:ENST00000523815.5:ENST00000519082.5	protein_coding	protein_coding	protein_coding	protein_coding	4	25	2	2.02391	2.15247	2.28103	0.0339274	0.0151554	0.134508	0.108535
chr22	47763876	47763975	7540694	0	+	0.454545	(0.44,0.476]	chr22	770752	30	INTRON	INTRON	ENSG00000224271	ENSG00000224271.7	ENST00000664761.1:ENST00000650683.1:ENST00000651536.1:ENST00000652656.1:ENST00000652072.1:ENST00000651445.1:ENST00000423737.5:ENST00000650660.1:ENST00000651056.1:ENST00000652611.1:ENST00000652399.1:ENST00000652123.1:ENST00000651311.1:ENST00000652505.1:ENST00000652030.2:ENST00000651403.1:ENST00000652228.1:ENST00000651124.1:ENST00000650972.1:ENST00000651985.1:ENST00000651637.1:ENST00000650924.1:ENST00000651003.1:ENST00000651948.2:ENST00000651293.1:ENST00000651939.1:ENST00000650787.1:ENST00000651517.1:ENST00000651662.1:ENST00000651638.1:ENST00000670853.1:ENST00000652080.1:ENST00000651294.1:ENST00000652164.1:ENST00000651538.1:ENST00000651033.1:ENST00000651584.1	lncRNA	lncRNA	lncRNA	lncRNA	9	100	2	1.99228	2.15246	2.31264	0.00615695	0.00316873	0.0711648	0.0503085
chr7	105117641	105117739	3601165	0	-	0.418367	(0.408,0.44]	chr7	336049	14	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SRPK2	ENSG00000135250.17	ENST00000465072.5:ENST00000393651.8:ENST00000357311.7:ENST00000466917.1:ENST00000485455.1:ENST00000477925.5:ENST00000489828.5:ENST00000474770.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	12	127	2	1.30866	2.152435	2.99621	0.0434157	6.51509e-5	0.14821	0.00669119
chr5	134174765	134174831	2726339	0	-	0.242424	[0,0.28]	chr5	256512	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SKP1	ENSG00000113558.19	ENST00000353411.11:ENST00000522552.5:ENST00000521216.5:ENST00000517625.5:ENST00000523966.5:ENST00000522855.5:ENST00000328392.10:ENST00000519054.5:ENST00000519321.5:ENST00000524288.1:ENST00000523359.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	83	2	2.06426	2.1523950000000003	2.24053	0.0256186	0.0168952	0.120376	0.110899
chr19	1077672	1077766	6993754	0	+	0.648936	(0.57,1]	chr19	692780	3	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	ARHGAP45	ENSG00000180448.11	ENST00000539243.6:ENST00000313093.7:ENST00000587602.5:ENST00000591293.2:ENST00000590214.5:ENST00000586866.5:ENST00000543365.5:ENST00000590577.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	25	2	2.13445	2.152355	2.17026	0.0241482	0.0220522	0.123836	0.12011
chr22	17971118	17971218	7550136	0	-	0.58	(0.57,1]	chr22	771756	639	INTRON	INTRON	MICAL3	ENSG00000243156.9	ENST00000441493.7:ENST00000672019.1:ENST00000495076.5:ENST00000424046.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	25	2	2.13445	2.152355	2.17026	0.0241482	0.0220522	0.123836	0.12011
chr18	13053788	13053888	6877214	0	+	0.46	(0.44,0.476]	chr18	681442	3	INTRON	INTRON	CEP192	ENSG00000101639.19	ENST00000325971.12:ENST00000506447.5:ENST00000589596.5:ENST00000513432.5:ENST00000511820.6:ENST00000510237.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	42	2	1.62896	2.15234	2.67572	0.0546679	0.0212064	0.182674	0.113017
chr8	52623483	52623576	3950168	0	-	0.354839	(0.35,0.378]	chr8	362260	12	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	RB1CC1	ENSG00000023287.13	ENST00000025008.10:ENST00000435644.6:ENST00000521611.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	119	2	2.00273	2.15234	2.30195	0.00416915	0.00377584	0.0591344	0.0540736
chr22	23971550	23971623	7563438	0	-	0.452055	(0.44,0.476]	chr22	773748	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	DDT	ENSG00000099977.15	ENST00000350608.7:ENST00000398344.9:ENST00000428792.1	protein_coding	protein_coding	protein_coding	protein_coding	8	87	2	1.60033	2.1522699999999997	2.70421	0.030306	9.23275e-4	0.130104	0.0278392
chr1	160329476	160329575	572178	0	-	0.464646	(0.44,0.476]	chr1	69355	34	INTRON	INTRON	COPA	ENSG00000122218.17	ENST00000241704.8:ENST00000696204.1:ENST00000696203.1:ENST00000649963.1:ENST00000696208.1:ENST00000696207.1:ENST00000649676.1:ENST00000368069.7:ENST00000647693.1:ENST00000649787.1:ENST00000650154.1:ENST00000647799.1:ENST00000648805.1:ENST00000647683.1:ENST00000649231.1:ENST00000648501.1:ENST00000696209.1:ENST00000696210.1:ENST00000696211.1:ENST00000647899.1:ENST00000696212.1:ENST00000696214.1:ENST00000696213.1:ENST00000696215.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	35	2	2.00609	2.1522550000000003	2.29842	0.0552483	0.0360127	0.165463	0.152355
chrX	45015089	45015188	7650026	0	+	0.444444	(0.44,0.476]	chrX	782751	37	INTRON	INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000675440.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000621147.5:ENST00000475233.1:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	35	2	2.00609	2.1522550000000003	2.29842	0.0552483	0.0360127	0.165463	0.152355
chr12	130873942	130874033	5247109	0	+	0.43956	(0.408,0.44]	chr12	498936	10	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	RAN	ENSG00000132341.12	ENST00000448750.7:ENST00000536606.5:ENST00000543796.6:ENST00000541630.5:ENST00000392369.6:ENST00000477395.5:ENST00000535090.5:ENST00000541679.7:ENST00000392367.4:ENST00000464211.6:ENST00000539498.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	150	2	1.77132	2.152245	2.53317	0.00801449	3.91894e-4	0.0802185	0.0184748
chr1	204535017	204535117	297608	0	+	0.3	(0.28,0.32]	chr1	34289	18	INTRON	INTRON	MDM4	ENSG00000198625.14	ENST00000367183.7:ENST00000391947.6:ENST00000454264.6:ENST00000612738.4:ENST00000614459.4:ENST00000616250.4:ENST00000367182.8:ENST00000463049.5:ENST00000470908.5:ENST00000471783.1:ENST00000367180.5:ENST00000507825.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	140	2	1.69646	2.152215	2.60797	0.0104499	0.00277183	0.0903187	0.0469265
chr2	152694349	152694445	1246292	0	-	0.322917	(0.32,0.35]	chr2	132356	4	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	PRPF40A	ENSG00000196504.20	ENST00000410080.8:ENST00000545856.8:ENST00000696382.1:ENST00000696381.1:ENST00000354363.11:ENST00000493468.7:ENST00000448428.2:ENST00000489741.1:ENST00000450303.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	112	2	1.71888	2.152205	2.58553	0.014315	0.00263388	0.104106	0.045806
chr17	81606490	81606590	6849292	0	-	0.36	(0.35,0.378]	chr17	678194	4	SS5_PROX	SS5_PROX:INTRON	NPLOC4	ENSG00000182446.14	ENST00000331134.11:ENST00000374747.9:ENST00000574897.5:ENST00000570324.1:ENST00000573328.5:ENST00000574344.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	39	2	1.81767	2.15212	2.48657	0.0640429	0.032907	0.177882	0.145164
chr16	22504154	22504253	6322647	0	+	0.40404	(0.378,0.408]	chr16	605439	120	INTRON	INTRON	NPIPB5	ENSG00000243716.11	ENST00000415654.5:ENST00000415833.6:ENST00000546168.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	14	155	2	1.77129	2.1521049999999997	2.53292	0.00676823	4.51433e-4	0.0711802	0.0192381
chr16	51646956	51647044	6350716	0	+	0.295455	(0.28,0.32]	chr16	609662	3	EXON_LNCRNA	EXON_LNCRNA	HNRNPA1P48	ENSG00000224578.5	ENST00000562726.1	protein_coding	processed_transcript	protein_coding	processed_transcript	21	278	2	1.73071	2.152095	2.57348	0.00386967	4.23604e-4	0.0565532	0.0189958
chr7	5604771	5604871	3272544	0	+	0.46	(0.44,0.476]	chr7	304186	1	SS3_PROX	SS3_PROX:INTRON	FSCN1	ENSG00000075618.18	ENST00000382361.8:ENST00000473330.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	57	2	1.85904	2.15209	2.44514	0.029889	0.0087381	0.129138	0.0845538
chrX	71535498	71535587	7679966	0	+	0.337079	(0.32,0.35]	chrX	786379	8	INTRON	INTRON	OGT	ENSG00000147162.14	ENST00000373719.8:ENST00000488174.5:ENST00000373701.7:ENST00000472270.1:ENST00000498566.3:ENST00000444774.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	10	128	2	1.61602	2.152045	2.68807	0.0249674	4.78715e-4	0.12011	0.0198328
chr1	224427704	224427804	645371	0	-	0.32	(0.28,0.32]	chr1	76289	26	INTRON	INTRON	WDR26	ENSG00000162923.17	ENST00000414423.9:ENST00000678917.1:ENST00000651911.2:ENST00000678879.1:ENST00000486652.5:ENST00000678555.1:ENST00000443112.6:ENST00000489825.5:ENST00000477425.1:ENST00000445239.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	78	2	1.62417	2.15196	2.67975	0.0252505	0.0213853	0.123719	0.12011
chr11	9309086	9309186	4909381	0	-	0.54	(0.515,0.57]	chr11	460162	90	INTRON	INTRON	TMEM41B	ENSG00000166471.11	ENST00000524543.5:ENST00000528080.6:ENST00000299596.8:ENST00000611268.4:ENST00000527813.5:ENST00000533723.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	49	2	1.77888	2.15196	2.52504	0.029342	0.0139834	0.128055	0.10247
chr10	50415864	50415964	4618604	0	-	0.44	(0.408,0.44]	chr10	425422	712	INTRON	INTRON	SGMS1	ENSG00000198964.14	ENST00000429490.5:ENST00000361781.7:ENST00000619438.4:ENST00000492601.2:ENST00000609445.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	88	2	1.76523	2.15192	2.53861	0.0174785	0.00202413	0.10482	0.0416117
chr7	25122018	25122117	3505877	0	-	0.40404	(0.378,0.408]	chr7	327122	35	UTR3	UTR3:EXON_MRNA	CYCS	ENSG00000172115.9	ENST00000305786.7	protein_coding	protein_coding	protein_coding	protein_coding	5	61	2	2.06535	2.15183	2.23831	0.0179575	0.0159849	0.114265	0.101453
chr11	86040197	86040297	5014554	0	-	0.32	(0.28,0.32]	chr11	473022	82	INTRON	INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000630913.2:ENST00000528398.5:ENST00000356360.9:ENST00000534412.5:ENST00000531558.1:ENST00000531930.5:ENST00000532041.5:ENST00000525162.5:ENST00000528256.1:ENST00000528411.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	11	140	2	1.71643	2.15179	2.58715	0.00963226	0.00300718	0.086971	0.0493883
chr1	229334924	229335023	652533	0	-	0.494949	(0.476,0.515]	chr1	77248	70	INTRON	INTRON	CCSAP	ENSG00000154429.11	ENST00000366687.5:ENST00000284617.7:ENST00000366686.1:ENST00000483092.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	42	2	1.74317	2.15175	2.56033	0.0396373	0.0287634	0.161534	0.127066
chr8	29058292	29058392	3726556	0	+	0.39	(0.378,0.408]	chr8	346339	10	INTRON	INTRON	HMBOX1	ENSG00000147421.18	ENST00000522468.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	15	170	2	1.83632	2.151735	2.46715	0.00621594	2.33643e-4	0.0680447	0.0135358
chr1	179875385	179875484	593445	0	-	0.373737	(0.35,0.378]	chr1	71117	18	EXON_LNCRNA	EXON_LNCRNA:INTRON	TOR1AIP2	ENSG00000169905.13	ENST00000367612.7:ENST00000609928.6:ENST00000482587.5:ENST00000495650.1:ENST00000474318.1:ENST00000483123.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	38	2	1.90405	2.15172	2.39939	0.0482651	0.0458078	0.171852	0.149888
chr15	40191848	40191948	6001561	0	+	0.36	(0.35,0.378]	chr15	570623	44	INTRON	INTRON	BUB1B	ENSG00000156970.13	ENST00000412359.7:ENST00000287598.11:ENST00000559733.5:ENST00000557848.1:ENST00000559772.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	38	2	1.90405	2.15172	2.39939	0.0482651	0.0458078	0.171852	0.149888
chr18	175704	175804	6854999	0	+	0.36	(0.35,0.378]	chr18	679508	85	INTRON	INTRON	USP14	ENSG00000101557.15	ENST00000582707.5:ENST00000400266.7:ENST00000261601.8:ENST00000578942.5:ENST00000383589.6:ENST00000583119.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	38	2	1.90405	2.15172	2.39939	0.0482651	0.0458078	0.171852	0.149888
chr5	69368002	69368099	2637102	0	-	0.350515	(0.35,0.378]	chr5	250494	10	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	AK6:TAF9	ENSG00000085231.14:ENSG00000273841.6	ENST00000380822.9:ENST00000502819.5:ENST00000380818.7:ENST00000512561.5:ENST00000618980.1:ENST00000685776.1:ENST00000506736.2:ENST00000217893.10:ENST00000688968.1:ENST00000504109.6:ENST00000691076.1:ENST00000693414.1:ENST00000328663.8:ENST00000693538.1:ENST00000508954.4:ENST00000691515.1:ENST00000690749.1:ENST00000689249.1:ENST00000687836.1:ENST00000686157.1:ENST00000503245.6:ENST00000512152.6:ENST00000509462.6:ENST00000691555.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	38	2	1.90405	2.15172	2.39939	0.0482651	0.0458078	0.171852	0.149888
chr5	134802948	134803048	2490841	0	+	0.37	(0.35,0.378]	chr5	237970	64	INTRON	INTRON	DDX46	ENSG00000145833.16	ENST00000452510.7:ENST00000507392.5:ENST00000354283.8:ENST00000503946.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	38	2	1.90405	2.15172	2.39939	0.0482651	0.0458078	0.171852	0.149888
chr18	9957165	9957263	6873785	0	+	0.44898	(0.44,0.476]	chr18	680907	31	UTR3	UTR3:EXON_MRNA	VAPA	ENSG00000101558.14	ENST00000400000.7	protein_coding	protein_coding	protein_coding	protein_coding	5	58	2	2.03034	2.15169	2.27304	0.0173569	0.0158915	0.109464	0.104189
chr1	110893429	110893528	183648	0	+	0.50505	(0.476,0.515]	chr1	20372	5	INTRON	INTRON	CD53	ENSG00000143119.14	ENST00000648608.1:ENST00000271324.6:ENST00000476408.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	58	2	1.68092	2.15164	2.62236	0.0474026	0.00517	0.169265	0.0631506
chr1	86965367	86965466	154101	0	+	0.474747	(0.44,0.476]	chr1	16962	65	INTRON	INTRON	HS2ST1	ENSG00000153936.18	ENST00000370550.10:ENST00000370551.8:ENST00000687893.1:ENST00000693745.1:ENST00000689904.1:ENST00000690674.1:ENST00000591456.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	57	2	1.87325	2.151605	2.42996	0.0265709	0.0104804	0.134088	0.0855777
chr6	73520223	73520321	3139449	0	-	0.591837	(0.57,1]	chr6	292540	3	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	EEF1A1	ENSG00000156508.19	ENST00000676547.1:ENST00000309268.11:ENST00000610520.5:ENST00000316292.13:ENST00000615060.5:ENST00000356303.7:ENST00000331523.7:ENST00000490569.6:ENST00000678515.1:ENST00000676710.1:ENST00000678702.1:ENST00000677236.1:ENST00000455918.2:ENST00000491404.2:ENST00000488500.2:ENST00000495333.6:ENST00000678703.1:ENST00000677062.1:ENST00000678143.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	20	110	2	2.0888	2.1516	2.2144	3.68888e-4	2.90969e-4	0.0178272	0.0151826
chr12	93391822	93391921	5189080	0	+	0.262626	[0,0.28]	chr12	490794	63	INTRON	INTRON	NUDT4	ENSG00000173598.14	ENST00000337179.9:ENST00000415493.7:ENST00000549992.5:ENST00000550056.5:ENST00000547014.5:ENST00000548662.5:ENST00000546925.1	protein_coding	protein_coding	protein_coding	protein_coding	10	136	2	1.70595	2.1515050000000002	2.59706	0.0115537	0.00894925	0.0962115	0.0799922
chr10	125051638	125051738	4713245	0	-	0.36	(0.35,0.378]	chr10	434897	121	INTRON	INTRON	CTBP2	ENSG00000175029.17	ENST00000337195.9:ENST00000411419.6:ENST00000494626.6:ENST00000531469.5:ENST00000460976.5:ENST00000476817.1:ENST00000530884.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	123	2	2.05483	2.15146	2.24809	0.00444522	0.00361961	0.0591668	0.0554656
chr1	1388452	1388549	359794	0	-	0.463918	(0.44,0.476]	chr1	41759	5	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CCNL2	ENSG00000221978.13	ENST00000400809.8:ENST00000480479.5:ENST00000482621.5:ENST00000463260.5:ENST00000496007.5:ENST00000482365.5:ENST00000481223.6:ENST00000418865.6:ENST00000505849.5:ENST00000488340.5:ENST00000492998.5:ENST00000469113.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	121	2	1.73299	2.1514550000000003	2.56992	0.014376	0.00035449500000000003	0.0968323	0.0168579
chr5	55329803	55329902	2355309	0	+	0.333333	(0.32,0.35]	chr5	227152	5	INTRON	INTRON	MTREX	ENSG00000039123.16	ENST00000230640.10:ENST00000506750.5:ENST00000504997.1:ENST00000505565.5:ENST00000502953.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	12	148	2	1.67228	2.151435	2.63059	0.0107071	0.00102636	0.0919603	0.029231300000000002
chr17	82256671	82256770	6852659	0	-	0.424242	(0.408,0.44]	chr17	679151	7	INTRON	INTRON	CSNK1D	ENSG00000141551.15	ENST00000398519.9:ENST00000314028.11:ENST00000581241.5:ENST00000392334.6:ENST00000403276.7:ENST00000582844.5:ENST00000580446.1:ENST00000581660.5:ENST00000578194.5:ENST00000579316.5:ENST00000584472.5:ENST00000580061.5:ENST00000585026.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	57	2	2.08376	2.1511649999999998	2.21857	0.0209591	0.0129886	0.112046	0.0991656
chr6	53281018	53281117	3107502	0	-	0.424242	(0.408,0.44]	chr6	291014	29	INTRON	INTRON	ELOVL5	ENSG00000012660.14	ENST00000370918.8:ENST00000542638.5:ENST00000304434.11:ENST00000485336.5:ENST00000465983.5:ENST00000486973.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	57	2	2.08376	2.1511649999999998	2.21857	0.0209591	0.0129886	0.112046	0.0991656
chr7	73474672	73474771	3554617	0	-	0.555556	(0.515,0.57]	chr7	330777	38	INTRON	INTRON	BAZ1B	ENSG00000009954.11	ENST00000339594.9:ENST00000404251.1	protein_coding	protein_coding	protein_coding	protein_coding	7	67	2	1.98329	2.151155	2.31902	0.0105419	0.00493032	0.0860389	0.0646039
chr1	167943927	167944027	248561	0	+	0.5	(0.476,0.515]	chr1	29536	63	INTRON	INTRON	DCAF6	ENSG00000143164.16	ENST00000450548.5:ENST00000470919.5:ENST00000432587.6:ENST00000367843.7:ENST00000470721.5:ENST00000367840.4:ENST00000312263.10:ENST00000455334.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	57	2	1.80284	2.151125	2.49941	0.033161	0.00811651	0.145899	0.0766625
chr3	196057783	196057872	1897288	0	-	0.247191	[0,0.28]	chr3	189903	1	SS5_PROX	SS5_PROX:INTRON	TFRC	ENSG00000072274.13	ENST00000420415.5:ENST00000360110.9:ENST00000392396.7:ENST00000475593.5:ENST00000483983.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	14	191	2	1.70454	2.1510949999999998	2.59765	0.00743532	0.00365944	0.0772645	0.0535094
chr4	1729986	1730086	1910219	0	+	0.44	(0.408,0.44]	chr4	191581	8	INTRON	INTRON	TACC3	ENSG00000013810.21	ENST00000651472.1:ENST00000612220.5:ENST00000484651.5:ENST00000313288.9:ENST00000652770.1:ENST00000651251.1:ENST00000650779.1:ENST00000470136.2:ENST00000651817.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	14	128	2	1.43856	2.151065	2.86357	0.0159344	5.90913e-4	0.109464	0.0225024
chr22	38490556	38490656	7587924	0	-	0.4	(0.378,0.408]	chr22	776723	12	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	DDX17	ENSG00000100201.23	ENST00000403230.3:ENST00000396821.8:ENST00000216019.11:ENST00000475004.6:ENST00000432525.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	41	427	2	1.68011	2.15106	2.62201	0.00143077	3.75621e-5	0.0347139	0.00523281
chr16	23424548	23424648	6463796	0	-	0.4	(0.378,0.408]	chr16	623766	4	SS5_PROX	SS5_PROX:INTRON	COG7	ENSG00000168434.13	ENST00000307149.10	protein_coding	protein_coding	protein_coding	protein_coding	4	49	2	1.94681	2.15104	2.35527	0.0457723	0.0121511	0.149888	0.0963966
chr17	60390481	60390581	6805859	0	-	0.29	(0.28,0.32]	chr17	672366	445	INTRON	INTRON	USP32	ENSG00000170832.13	ENST00000300896.9:ENST00000590133.5:ENST00000589335.5:ENST00000393003.7:ENST00000588898.1:ENST00000589761.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	83	2	1.79739	2.151005	2.50462	0.0224995	0.0102735	0.124921	0.0850389
chr10	30347862	30347961	4587633	0	-	0.393939	(0.378,0.408]	chr10	422990	59	INTRON	INTRON	MTPAP	ENSG00000107951.15	ENST00000263063.9:ENST00000488290.5:ENST00000417581.1:ENST00000421701.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	72	2	1.73164	2.15093	2.57022	0.0441773	0.00179058	0.149888	0.0392749
chr2	39080965	39081065	1101937	0	-	0.44	(0.408,0.44]	chr2	118302	124	INTRON	INTRON	SOS1	ENSG00000115904.15	ENST00000692089.1:ENST00000402219.8:ENST00000690876.1:ENST00000395038.6:ENST00000691229.1:ENST00000689668.1:ENST00000690679.1:ENST00000461545.2:ENST00000451331.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	54	2	1.40381	2.15088	2.89795	0.0521927	0.0110735	0.177259	0.0873897
chr2	97137370	97137469	831088	0	+	0.464646	(0.44,0.476]	chr2	92964	99	INTRON	INTRON	ANKRD36	ENSG00000135976.21	ENST00000420699.9:ENST00000652721.1:ENST00000461153.7	protein_coding	protein_coding	protein_coding	protein_coding	4	42	2	1.69402	2.15088	2.60774	0.0456129	0.0255874	0.164236	0.120269
chr8	52652725	52652824	3950473	0	-	0.444444	(0.44,0.476]	chr8	362312	65	INTRON	INTRON	RB1CC1	ENSG00000023287.13	ENST00000025008.10:ENST00000435644.6:ENST00000521611.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	42	2	1.69402	2.15088	2.60774	0.0456129	0.0255874	0.164236	0.120269
chr8	67208287	67208387	3962429	0	-	0.39	(0.378,0.408]	chr8	363563	12	INTRON	INTRON	ARFGEF1	ENSG00000066777.9	ENST00000520381.5:ENST00000518789.5:ENST00000262215.8:ENST00000518230.5	protein_coding	protein_coding	protein_coding	protein_coding	5	50	2	1.51223	2.150845	2.78946	0.051139	0.0158859	0.176696	0.101453
chr13	79400603	79400703	5626353	0	-	0.31	(0.28,0.32]	chr13	536667	213	INTRON	INTRON	RBM26	ENSG00000139746.16	ENST00000438737.3:ENST00000438724.5:ENST00000622611.4:ENST00000267229.11:ENST00000472143.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	60	2	1.96376	2.150735	2.33771	0.0480066	0.0142701	0.153019	0.103838
chr7	105012098	105012195	3601072	0	-	0.474227	(0.44,0.476]	chr7	336036	5	EXON_LNCRNA	EXON_LNCRNA:INTRON	LINC01004	ENSG00000228393.5	ENST00000450686.1:ENST00000655204.2:ENST00000445184.1:ENST00000689371.1:ENST00000690819.1:ENST00000688692.1:ENST00000693045.1:ENST00000684783.1:ENST00000685115.1:ENST00000688127.1:ENST00000693130.1:ENST00000687259.1:ENST00000689586.1:ENST00000687408.1:ENST00000688097.1:ENST00000687900.1:ENST00000684829.1	lncRNA	lncRNA	lncRNA	lncRNA	22	236	2	1.83133	2.15069	2.47005	0.00300275	7.59013e-5	0.049352	0.00731687
chr9	131138384	131138483	4215754	0	+	0.50505	(0.476,0.515]	chr9	386544	20	INTRON	INTRON	NUP214	ENSG00000126883.19	ENST00000695497.1:ENST00000695498.1:ENST00000695496.1:ENST00000695495.1:ENST00000695494.1:ENST00000695493.1:ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000525561.2:ENST00000651022.1:ENST00000695499.1:ENST00000530843.1:ENST00000530863.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	19	203	2	1.91044	2.15061	2.39078	0.00169881	3.65456e-4	0.0381936	0.0177497
chr19	10674594	10674693	7013422	0	+	0.414141	(0.408,0.44]	chr19	696780	27	INTRON	INTRON	ILF3	ENSG00000129351.17	ENST00000449870.5:ENST00000587928.5:ENST00000407004.7:ENST00000589998.5:ENST00000589600.5:ENST00000590009.5:ENST00000587505.5:ENST00000589052.5:ENST00000250241.12:ENST00000590261.5:ENST00000588657.5:ENST00000592763.5:ENST00000587840.5:ENST00000589416.5:ENST00000585835.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	133	2	1.93275	2.150525	2.3683	0.00938746	3.96367e-4	0.0817766	0.0178651
chr3	43542019	43542119	1674634	0	-	0.46	(0.44,0.476]	chr3	170972	1089	INTRON	INTRON	ANO10	ENSG00000160746.13	ENST00000292246.8:ENST00000350459.8:ENST00000396091.7:ENST00000414522.6:ENST00000451430.6:ENST00000448045.1	protein_coding	protein_coding	protein_coding	protein_coding	7	78	2	2.04674	2.15052	2.2543	0.00803423	0.00787184	0.0803474	0.076155
chr11	9308787	9308886	4909378	0	-	0.353535	(0.35,0.378]	chr11	460162	87	INTRON	INTRON	TMEM41B	ENSG00000166471.11	ENST00000524543.5:ENST00000528080.6:ENST00000299596.8:ENST00000611268.4:ENST00000527813.5:ENST00000533723.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	47	2	1.97646	2.150445	2.32443	0.0544216	0.0193942	0.164972	0.119831
chr22	41835256	41835356	7526019	0	+	0.44	(0.408,0.44]	chr22	769353	15	INTRON	INTRON	SREBF2	ENSG00000198911.12	ENST00000612482.4:ENST00000361204.9:ENST00000424354.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	69	2	1.83501	2.1504399999999997	2.46587	0.0323448	0.00280622	0.133003	0.0488779
chr9	111930474	111930572	4184798	0	+	0.530612	(0.515,0.57]	chr9	381721	4	INTRON	INTRON	UGCG	ENSG00000148154.10	ENST00000374279.4:ENST00000474306.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	75	2	2.11384	2.150405	2.18697	0.0118599	0.00232379	0.0899583	0.0442989
chr1	12001113	12001208	26656	0	+	0.484211	(0.476,0.515]	chr1	3121	9	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	MFN2	ENSG00000116688.18	ENST00000444836.5:ENST00000674817.1:ENST00000675053.1:ENST00000675298.1:ENST00000675817.1:ENST00000675194.1:ENST00000674548.1:ENST00000675959.1:ENST00000675872.1:ENST00000676426.1:ENST00000674658.1:ENST00000674910.1:ENST00000675231.1:ENST00000235329.10:ENST00000676293.1:ENST00000675919.1:ENST00000675987.1:ENST00000675512.1:ENST00000675113.1:ENST00000675483.1:ENST00000675528.1:ENST00000675404.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	65	2	1.63962	2.15037	2.66112	0.0346854	0.0044598	0.148144	0.0592169
chr3	149085289	149085389	1840991	0	-	0.5	(0.476,0.515]	chr3	185206	4	SS3_PROX	SS3_PROX:INTRON	HLTF	ENSG00000071794.16	ENST00000310053.10:ENST00000465259.5:ENST00000392912.6:ENST00000494055.5:ENST00000481663.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	65	2	1.63962	2.15037	2.66112	0.0346854	0.0044598	0.148144	0.0592169
chr8	52686504	52686580	3950827	0	-	0.381579	(0.378,0.408]	chr8	362383	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RB1CC1	ENSG00000023287.13	ENST00000025008.10:ENST00000435644.6:ENST00000521611.1:ENST00000518710.5:ENST00000517963.1:ENST00000518211.1:ENST00000518468.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	82	2	1.70666	2.15023	2.5938	0.0140577	0.00614976	0.102916	0.0676501
chr19	28490555	28490655	7166000	0	-	0.63	(0.57,1]	chr19	724189	223	INTRON	INTRON	ENSG00000283403:ENSG00000267243	ENSG00000283403.1:ENSG00000267243.6	ENST00000592347.5:ENST00000593065.5	lncRNA	lncRNA	lncRNA	lncRNA	13	71	2	1.81468	2.150215	2.48575	0.00423968	4.00651e-4	0.0573022	0.0179905
chr20	43708195	43708293	7276475	0	+	0.44898	(0.44,0.476]	chr20	739765	25	INTRON	INTRON	MYBL2	ENSG00000101057.16	ENST00000396863.8:ENST00000217026.5	protein_coding	protein_coding	protein_coding	protein_coding	6	65	2	1.56252	2.150165	2.73781	0.0465207	0.00276493	0.151387	0.04867
chr3	42213220	42213319	1405680	0	+	0.454545	(0.44,0.476]	chr3	147607	7	INTRON	INTRON	TRAK1	ENSG00000182606.17	ENST00000487159.5:ENST00000672026.1:ENST00000673621.2:ENST00000327628.10:ENST00000396175.5	protein_coding	protein_coding	protein_coding	protein_coding	6	65	2	1.56252	2.150165	2.73781	0.0465207	0.00276493	0.151387	0.04867
chr21	14542716	14542815	7428169	0	-	0.424242	(0.408,0.44]	chr21	757769	190	INTRON	INTRON	SAMSN1	ENSG00000155307.19	ENST00000647101.1:ENST00000644288.1:ENST00000400564.5:ENST00000400566.6:ENST00000285670.7:ENST00000619120.4:ENST00000493640.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	59	2	1.29431	2.15013	3.00595	0.0580322	0.00781452	0.188651	0.0759016
chr15	40171680	40171780	6001356	0	+	0.31	(0.28,0.32]	chr15	570597	6	INTRON	INTRON	BUB1B	ENSG00000156970.13	ENST00000560120.5:ENST00000559414.5:ENST00000412359.7:ENST00000287598.11	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	60	2	1.91611	2.15001	2.38391	0.0539102	0.0122525	0.164153	0.0969406
chr4	2241802	2241897	2098049	0	-	0.726316	(0.57,1]	chr4	207592	4	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HAUS3	ENSG00000214367.9	ENST00000672739.1:ENST00000672725.1:ENST00000506763.5:ENST00000243706.8:ENST00000443786.3:ENST00000514395.1:ENST00000502440.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	32	2	1.77365	2.14999	2.52633	0.0670385	0.0018535	0.183051	0.039946
chr14	101831400	101831500	5819205	0	+	0.39	(0.378,0.408]	chr14	551861	3	SS3_PROX	SS3_PROX:INTRON	PPP2R5C	ENSG00000078304.20	ENST00000694906.1:ENST00000422945.6:ENST00000554442.5:ENST00000328724.9:ENST00000553890.1:ENST00000350249.7:ENST00000557621.5:ENST00000556946.1:ENST00000556307.5:ENST00000553730.5:ENST00000557714.1:ENST00000334743.9:ENST00000445439.7:ENST00000557095.5:ENST00000556493.1:ENST00000553842.1:ENST00000556373.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	93	2	1.9808	2.149985	2.31917	0.0123757	0.00252588	0.0916369	0.0465056
chr1	162500051	162500149	238015	0	+	0.469388	(0.44,0.476]	chr1	28655	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	UHMK1	ENSG00000152332.16	ENST00000545294.5:ENST00000538489.5:ENST00000489294.2:ENST00000282169.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	36	2	1.9039	2.14997	2.39604	0.0501498	0.0404291	0.161534	0.156383
chr10	73609940	73610039	4651322	0	-	0.444444	(0.44,0.476]	chr10	428086	31	INTRON	INTRON	USP54	ENSG00000166348.20	ENST00000339859.8:ENST00000689425.1:ENST00000685297.1:ENST00000422491.7:ENST00000433394.1:ENST00000474929.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	36	2	1.9039	2.14997	2.39604	0.0501498	0.0404291	0.161534	0.156383
chr17	80909335	80909429	6688458	0	+	0.468085	(0.44,0.476]	chr17	653530	4	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPTOR	ENSG00000141564.15	ENST00000577161.5:ENST00000306801.8:ENST00000544334.6:ENST00000575542.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	36	2	1.9039	2.14997	2.39604	0.0501498	0.0404291	0.161534	0.156383
chr3	195378614	195378714	1895267	0	-	0.46	(0.44,0.476]	chr3	189674	205	INTRON	INTRON	ACAP2	ENSG00000114331.16	ENST00000326793.11:ENST00000635383.1:ENST00000480906.5:ENST00000481463.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	36	2	1.9039	2.14997	2.39604	0.0501498	0.0404291	0.161534	0.156383
chr1	155783385	155783485	563696	0	-	0.36	(0.35,0.378]	chr1	67310	52	INTRON	INTRON	GON4L	ENSG00000116580.20	ENST00000368331.6:ENST00000615926.4:ENST00000437809.5:ENST00000271883.9:ENST00000361040.9:ENST00000622608.2:ENST00000471341.5:ENST00000482386.5:ENST00000466224.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	38	2	1.9755	2.149965	2.32443	0.0544216	0.0398617	0.164972	0.161534
chr3	179393348	179393447	1567408	0	+	0.363636	(0.35,0.378]	chr3	162161	14	UTR3	UTR3:EXON_MRNA	MFN1	ENSG00000171109.19	ENST00000471841.6	protein_coding	protein_coding	protein_coding	protein_coding	3	38	2	1.9755	2.149965	2.32443	0.0544216	0.0398617	0.164972	0.161534
chr7	66403636	66403734	3538524	0	-	0.377551	(0.35,0.378]	chr7	330104	7	INTRON	INTRON	LINC00174	ENSG00000179406.9	ENST00000638517.1:ENST00000640964.1	lncRNA	lncRNA	lncRNA	lncRNA	3	38	2	1.9755	2.149965	2.32443	0.0544216	0.0398617	0.164972	0.161534
chr8	105540966	105541066	3839472	0	+	0.36	(0.35,0.378]	chr8	354067	116	INTRON	INTRON	ZFPM2	ENSG00000169946.14	ENST00000407775.7:ENST00000520492.5:ENST00000520027.5:ENST00000524235.5:ENST00000511341.6:ENST00000517361.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	38	2	1.9755	2.149965	2.32443	0.0544216	0.0398617	0.164972	0.161534
chr4	39906341	39906438	2131476	0	-	0.402062	(0.378,0.408]	chr4	210187	18	INTRON	INTRON	PDS5A	ENSG00000121892.15	ENST00000303538.13:ENST00000503396.5:ENST00000513798.1:ENST00000512643.1:ENST00000503867.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	18	208	2	1.4529	2.14991	2.84692	0.020942	1.32842e-5	0.112046	0.00270791
chr1	1723207	1723299	361204	0	-	0.413043	(0.408,0.44]	chr1	42103	4	SS3_PROX	SS3_PROX:INTRON	CDK11A:ENSG00000268575	ENSG00000008128.23:ENSG00000268575.1	ENST00000404249.8:ENST00000598846.1:ENST00000357760.6:ENST00000358779.9:ENST00000378633.5:ENST00000460465.5:ENST00000479362.1:ENST00000487462.1:ENST00000401096.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA	7	73	2	1.54273	2.1499	2.75707	0.0337312	0.00317496	0.146709	0.0503542
chr1	17419124	17419223	384775	0	-	0.454545	(0.44,0.476]	chr1	45465	21	INTRON	INTRON	RCC2	ENSG00000179051.14	ENST00000375436.9:ENST00000375433.3	protein_coding	protein_coding	protein_coding	protein_coding	7	72	2	1.78423	2.1498850000000003	2.51554	0.0143065	0.00777207	0.104058	0.0757731
chr12	62269864	62269964	5149643	0	+	0.36	(0.35,0.378]	chr12	487283	90	INTRON	INTRON	USP15	ENSG00000135655.16	ENST00000353364.7:ENST00000549523.5:ENST00000550632.5:ENST00000312635.10:ENST00000548524.5:ENST00000280377.10:ENST00000551206.5:ENST00000546718.5:ENST00000537297.2:ENST00000549237.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	38	2	1.82887	2.14976	2.47065	0.0584878	0.0386172	0.189395	0.142656
chr16	75010668	75010768	6389535	0	+	0.37	(0.35,0.378]	chr16	614482	79	INTRON	INTRON	ZNRF1	ENSG00000186187.12	ENST00000335325.9:ENST00000320619.10:ENST00000567962.5:ENST00000566250.5:ENST00000564320.1:ENST00000568511.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	38	2	1.82887	2.14976	2.47065	0.0584878	0.0386172	0.189395	0.142656
chr17	28052808	28052907	6582621	0	+	0.363636	(0.35,0.378]	chr17	639835	40	INTRON	INTRON	NLK	ENSG00000087095.13	ENST00000407008.8:ENST00000496808.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	38	2	1.82887	2.14976	2.47065	0.0584878	0.0386172	0.189395	0.142656
chr2	208676084	208676184	996158	0	+	0.37	(0.35,0.378]	chr2	106920	187	INTRON	INTRON	PTH2R	ENSG00000144407.10	ENST00000419079.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	3	38	2	1.82887	2.14976	2.47065	0.0584878	0.0386172	0.189395	0.142656
chr1	150369717	150369817	221752	0	+	0.44	(0.408,0.44]	chr1	25051	44	INTRON	INTRON	RPRD2	ENSG00000163125.16	ENST00000492220.1:ENST00000369068.5:ENST00000401000.8:ENST00000369067.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	109	2	2.06309	2.14974	2.23639	0.00445002	0.00294584	0.0592079	0.0497776
chr1	100111776	100111875	515646	0	-	0.333333	(0.32,0.35]	chr1	60466	9	INTRON	INTRON	SASS6	ENSG00000156876.10	ENST00000462159.1:ENST00000287482.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	69	2	1.40199	2.14971	2.89743	0.0432025	0.0127608	0.162255	0.0926667
chr10	78020463	78020560	4655278	0	-	0.536082	(0.515,0.57]	chr10	428902	4	INTRON	INTRON	POLR3A	ENSG00000148606.14	ENST00000372371.8	protein_coding	protein_coding	protein_coding	protein_coding	5	49	2	1.56681	2.149695	2.73258	0.064862	0.00260192	0.179394	0.0470772
chr1	16331100	16331200	382406	0	-	0.54	(0.515,0.57]	chr1	44888	153	INTRON	INTRON	FBXO42	ENSG00000037637.11	ENST00000375592.8	protein_coding	protein_coding	protein_coding	protein_coding	7	64	2	2.08662	2.1496750000000002	2.21273	0.0196151	0.00375149	0.109486	0.0562562
chr17	42474338	42474438	6611446	0	+	0.48	(0.476,0.515]	chr17	644092	30	INTRON	INTRON	ATP6V0A1	ENSG00000033627.17	ENST00000393829.6:ENST00000343619.9:ENST00000537728.5:ENST00000588901.5:ENST00000264649.10:ENST00000585525.5:ENST00000544137.5:ENST00000589727.5:ENST00000592324.1:ENST00000587375.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	65	2	1.40757	2.14961	2.89165	0.0707852	0.00142068	0.184528	0.034662
chr7	136179910	136180010	3432053	0	+	0.35	(0.32,0.35]	chr7	319917	21	INTRON	INTRON	ENSG00000232053	ENSG00000232053.7	ENST00000657456.1:ENST00000668062.1:ENST00000668668.1:ENST00000445293.6:ENST00000659747.1:ENST00000668896.1:ENST00000435996.1	lncRNA	lncRNA	lncRNA	lncRNA	6	80	2	1.92705	2.14952	2.37199	0.0267365	0.00465833	0.123349	0.0629753
chr19	58255280	58255380	7106794	0	+	0.49	(0.476,0.515]	chr19	713342	40	INTRON	INTRON	ZNF544	ENSG00000198131.15	ENST00000599227.5:ENST00000687789.1:ENST00000594384.5:ENST00000652201.1:ENST00000596825.5:ENST00000596929.5:ENST00000596677.5:ENST00000600220.5:ENST00000600044.5:ENST00000596652.5:ENST00000599953.1:ENST00000598880.5:ENST00000595981.5:ENST00000269829.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	78	2	1.96437	2.149485	2.3346	0.0124351	0.00494807	0.0920366	0.0646039
chr19	10665396	10665495	7013323	0	+	0.40404	(0.378,0.408]	chr19	696757	95	INTRON	INTRON	ILF3	ENSG00000129351.17	ENST00000449870.5:ENST00000587928.5:ENST00000407004.7:ENST00000589998.5:ENST00000589600.5:ENST00000589283.5:ENST00000590009.5:ENST00000593199.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	93	2	2.01071	2.14932	2.28793	0.0111045	0.00291235	0.0876025	0.0494641
chr7	133061450	133061550	3645683	0	-	0.45	(0.44,0.476]	chr7	338880	95	INTRON	INTRON	CHCHD3	ENSG00000106554.13	ENST00000262570.10:ENST00000448878.6:ENST00000423635.5:ENST00000481152.2:ENST00000457942.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	47	2	2.02558	2.14931	2.27304	0.0363567	0.0158915	0.138959	0.109464
chr2	61397827	61397926	1129821	0	-	0.454545	(0.44,0.476]	chr2	121485	22	INTRON	INTRON	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000453133.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	73	2	1.95962	2.149305	2.33899	0.0142027	0.00707371	0.0959987	0.0754923
chr6	15422947	15423047	2824718	0	+	0.38	(0.378,0.408]	chr6	265204	122	INTRON	INTRON	JARID2	ENSG00000008083.14	ENST00000341776.7:ENST00000397311.4	protein_coding	protein_coding	protein_coding	protein_coding	6	71	2	1.90812	2.1493	2.39048	0.0264295	0.00395852	0.122506	0.057511
chr2	144401790	144401887	1240601	0	-	0.268041	[0,0.28]	chr2	131670	6	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	ZEB2	ENSG00000169554.23	ENST00000636471.1:ENST00000627532.3:ENST00000638128.1:ENST00000637304.1:ENST00000636179.1:ENST00000636820.1:ENST00000637045.1:ENST00000636413.1:ENST00000638007.1:ENST00000638087.1:ENST00000419938.5:ENST00000409487.7:ENST00000440875.6:ENST00000636732.2:ENST00000636026.2:ENST00000675069.1:ENST00000689298.1:ENST00000539609.7:ENST00000558170.6:ENST00000303660.8:ENST00000675145.1:ENST00000427902.5:ENST00000637267.2:ENST00000392861.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	72	2	1.8986	2.149255	2.39991	0.0531512	0.0163416	0.179787	0.101571
chr4	67479974	67480074	2152842	0	-	0.4	(0.378,0.408]	chr4	211913	46	INTRON	INTRON	CENPC	ENSG00000145241.11	ENST00000273853.11:ENST00000513216.5:ENST00000506882.5:ENST00000515140.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	60	2	1.94681	2.149245	2.35168	0.0457723	0.0046563	0.149888	0.0629753
chr6	157856063	157856163	3016091	0	+	0.39	(0.378,0.408]	chr6	281353	260	INTRON	INTRON	SNX9	ENSG00000130340.17	ENST00000614703.4:ENST00000614800.4:ENST00000680863.1:ENST00000679814.1:ENST00000680464.1:ENST00000681186.1:ENST00000679732.1:ENST00000681183.1:ENST00000681534.1:ENST00000681651.1:ENST00000680089.1:ENST00000680078.1:ENST00000680974.1:ENST00000680095.1:ENST00000680015.1:ENST00000681138.1:ENST00000392185.8:ENST00000679790.1:ENST00000680495.1:ENST00000679691.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	60	2	1.94681	2.149245	2.35168	0.0457723	0.0046563	0.149888	0.0629753
chr7	99406346	99406446	3583301	0	-	0.36	(0.35,0.378]	chr7	333755	10	INTRON	INTRON	PDAP1	ENSG00000106244.13	ENST00000350498.8:ENST00000426447.3:ENST00000626285.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	95	2	2.0653	2.1491949999999997	2.23309	0.00930277	0.00473276	0.0817766	0.0633849
chr14	23324677	23324772	5656991	0	+	0.452632	(0.44,0.476]	chr14	539473	5	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	BCL2L2-PABPN1:PABPN1	ENSG00000258643.6:ENSG00000100836.11	ENST00000678502.1:ENST00000553781.5:ENST00000557008.2:ENST00000216727.9:ENST00000397276.6:ENST00000556821.5:ENST00000555295.1	protein_coding	protein_coding	protein_coding	protein_coding	20	175	2	1.4588699999999999	2.14914	2.83941	0.00888534	2.54236e-4	0.0849778	0.0147895
chr19	46733537	46733626	7195133	0	-	0.505618	(0.476,0.515]	chr19	728919	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	STRN4	ENSG00000090372.15	ENST00000391910.7:ENST00000263280.11:ENST00000539396.5:ENST00000600358.7:ENST00000435164.6:ENST00000602397.5:ENST00000594704.5:ENST00000593979.6:ENST00000597063.6:ENST00000597021.6:ENST00000596012.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	35	2	2.06491	2.14913	2.23335	0.0634557	0.0304733	0.177047	0.143385
chr7	127738396	127738496	3403274	0	+	0.49	(0.476,0.515]	chr7	318134	166	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000468166.5:ENST00000465900.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	35	2	2.06491	2.14913	2.23335	0.0634557	0.0304733	0.177047	0.143385
chr8	102410673	102410772	4012736	0	-	0.50505	(0.476,0.515]	chr8	367237	487	INTRON	INTRON	UBR5	ENSG00000104517.13	ENST00000520539.6:ENST00000220959.8:ENST00000521922.5	protein_coding	protein_coding	protein_coding	protein_coding	3	35	2	2.06491	2.14913	2.23335	0.0634557	0.0304733	0.177047	0.143385
chr15	64378881	64378980	6205065	0	-	0.414141	(0.408,0.44]	chr15	591801	16	INTRON	INTRON	ENSG00000259316:PCLAF	ENSG00000259316.12:ENSG00000166803.14	ENST00000634318.1:ENST00000635704.1:ENST00000634529.1:ENST00000635511.1:ENST00000635605.1:ENST00000635593.1:ENST00000635320.1:ENST00000300035.9:ENST00000380258.6:ENST00000559519.5:ENST00000558008.3:ENST00000558043.5:ENST00000560234.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	48	2	2.07919	2.14888	2.21857	0.0291499	0.0209591	0.14147	0.112046
chr20	32808097	32808194	7257152	0	+	0.43299	(0.408,0.44]	chr20	737245	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	DNMT3B	ENSG00000088305.19	ENST00000696232.1:ENST00000328111.6:ENST00000696231.1:ENST00000348286.6:ENST00000353855.6:ENST00000696233.1:ENST00000443239.7:ENST00000201963.3:ENST00000696238.1:ENST00000696245.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	80	2	1.87977	2.148865	2.41796	0.0282738	0.0015483	0.125825	0.0363194
chr1	41176957	41177056	430173	0	-	0.606061	(0.57,1]	chr1	52248	141	INTRON	INTRON	SCMH1	ENSG00000010803.17	ENST00000695335.1:ENST00000372596.5:ENST00000372597.5:ENST00000337495.9:ENST00000695336.1	protein_coding	protein_coding	protein_coding	protein_coding	3	19	2	1.77365	2.14885	2.52405	0.0670385	0.0263139	0.183051	0.133676
chr1	148152063	148152149	545512	0	-	0.662791	(0.57,1]	chr1	63798	5	UTR5	UTR5:EXON_MRNA	NBPF11	ENSG00000263956.8	ENST00000615281.4:ENST00000682118.1	protein_coding	protein_coding	protein_coding	protein_coding	3	19	2	1.77365	2.14885	2.52405	0.0670385	0.0263139	0.183051	0.133676
chr13	114289005	114289104	5550903	0	+	0.636364	(0.57,1]	chr13	530565	15	INTRON	INTRON	UPF3A	ENSG00000169062.15	ENST00000375299.8:ENST00000351487.5:ENST00000484246.5:ENST00000480362.5:ENST00000474056.5:ENST00000493727.5:ENST00000481131.5:ENST00000479712.1:ENST00000475218.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	19	2	1.77365	2.14885	2.52405	0.0670385	0.0263139	0.183051	0.133676
chr22	39529191	39529291	7589825	0	-	0.6	(0.57,1]	chr22	777118	2	UTR3	UTR3:EXON_MRNA	RPS19BP1	ENSG00000187051.9	ENST00000334678.8:ENST00000488602.1:ENST00000420879.5:ENST00000459956.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	19	2	1.77365	2.14885	2.52405	0.0670385	0.0263139	0.183051	0.133676
chr6	158568323	158568423	3021681	0	+	0.62	(0.57,1]	chr6	281792	77	INTRON	INTRON	TMEM181	ENSG00000146433.10	ENST00000367090.4:ENST00000684151.1	protein_coding	protein_coding	protein_coding	protein_coding	3	19	2	1.77365	2.14885	2.52405	0.0670385	0.0263139	0.183051	0.133676
chr7	32874296	32874393	3515446	0	-	0.57732000000000006	(0.57,1]	chr7	327768	31	INTRON	INTRON	KBTBD2	ENSG00000170852.12	ENST00000304056.9:ENST00000485611.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	19	2	1.77365	2.14885	2.52405	0.0670385	0.0263139	0.183051	0.133676
chr6	110991346	110991446	2939395	0	+	0.4	(0.378,0.408]	chr6	276853	2	SS3_PROX	SS3_PROX:INTRON	RPF2	ENSG00000197498.13	ENST00000368864.8:ENST00000441448.7:ENST00000607388.1:ENST00000425871.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	49	2	1.88729	2.14883	2.41037	0.0532327	0.0100185	0.162538	0.0880217
chr5	180566587	180566687	2562592	0	+	0.34	(0.32,0.35]	chr5	245117	1	SS3_PROX	SS3_PROX:INTRON	CNOT6	ENSG00000113300.13	ENST00000261951.9:ENST00000393356.7:ENST00000618123.4:ENST00000504343.1	protein_coding	protein_coding	protein_coding	protein_coding	17	210	2	2.12616	2.14877	2.17138	0.0030215	6.5612e-4	0.0493883	0.0232396
chr11	59637502	59637601	4954620	0	-	0.494949	(0.476,0.515]	chr11	465245	9	UTR3	UTR3:EXON_MRNA	PATL1	ENSG00000166889.14	ENST00000300146.10	protein_coding	protein_coding	protein_coding	protein_coding	4	47	2	1.86492	2.14867	2.43242	0.0550347	0.0091895	0.165463	0.0855292
chr15	58729794	58729893	6193316	0	-	0.50505	(0.476,0.515]	chr15	589988	117	INTRON	INTRON	ADAM10	ENSG00000137845.15	ENST00000260408.8:ENST00000402627.5:ENST00000561288.1:ENST00000559053.1:ENST00000558733.5:ENST00000439637.5:ENST00000497846.5:ENST00000558004.1:ENST00000560608.5:ENST00000561149.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	47	2	1.86492	2.14867	2.43242	0.0550347	0.0091895	0.165463	0.0855292
chr7	66951734	66951833	3326542	0	+	0.535354	(0.515,0.57]	chr7	309365	2	INTRON	INTRON	TMEM248	ENSG00000106609.16	ENST00000341567.8:ENST00000433271.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	31	2	1.9459	2.148575	2.35125	0.0436431	0.0429089	0.162255	0.148082
chr2	97158167	97158267	831304	0	+	0.27	[0,0.28]	chr2	93012	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ANKRD36	ENSG00000135976.21	ENST00000420699.9:ENST00000652721.1:ENST00000461153.7	protein_coding	protein_coding	protein_coding	protein_coding	5	87	2	1.62313	2.148535	2.67394	0.0605286	0.00697944	0.191883	0.0718189
chr11	65429063	65429163	4805833	0	+	0.32	(0.28,0.32]	chr11	446554	64	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	86	1146	2	2.14652	2.14851	2.1505	3.78469e-4	7.56045e-5	0.0180737	0.00729542
chr6	157392860	157392960	3011659	0	+	0.42	(0.408,0.44]	chr6	281268	102	INTRON	INTRON	ZDHHC14	ENSG00000175048.17	ENST00000414563.6:ENST00000359775.10	protein_coding	protein_coding	protein_coding	protein_coding	7	80	2	1.84301	2.14848	2.45395	0.0174311	0.00366321	0.112689	0.0535094
chr2	3475096	3475196	686722	0	+	0.49	(0.476,0.515]	chr2	80557	21	INTRON	INTRON	TRAPPC12	ENSG00000171853.16	ENST00000382110.6:ENST00000324266.10:ENST00000417243.5:ENST00000433382.5:ENST00000415624.5:ENST00000497597.5:ENST00000473348.5:ENST00000461577.5:ENST00000489032.5:ENST00000437733.5:ENST00000416918.5:ENST00000469400.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	47	2	2.13304	2.148405	2.16377	0.024866	0.0243026	0.132101	0.12011
chr7	140476834	140476934	3661610	0	-	0.51	(0.476,0.515]	chr7	339948	11	INTRON	INTRON	MKRN1	ENSG00000133606.11	ENST00000255977.7:ENST00000475010.5:ENST00000495305.5:ENST00000474576.5:ENST00000480552.5:ENST00000496169.5:ENST00000443720.6:ENST00000471104.5:ENST00000467513.5:ENST00000494939.1:ENST00000498535.1:ENST00000473444.1:ENST00000475180.5:ENST00000481705.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	47	2	2.13304	2.148405	2.16377	0.024866	0.0243026	0.132101	0.12011
chr7	106283747	106283847	3608599	0	-	0.33	(0.32,0.35]	chr7	336542	62	INTRON	INTRON	NAMPT	ENSG00000105835.13	ENST00000681491.1:ENST00000222553.8:ENST00000681494.1:ENST00000680708.1:ENST00000681653.1:ENST00000681391.1:ENST00000680991.1:ENST00000680077.1:ENST00000681456.1:ENST00000680675.1:ENST00000681550.1:ENST00000680864.1:ENST00000680584.1:ENST00000680669.1:ENST00000424768.2:ENST00000681255.1:ENST00000679873.1:ENST00000679643.1:ENST00000681878.1:ENST00000489732.2:ENST00000679951.1:ENST00000680823.1:ENST00000680468.1:ENST00000681936.1:ENST00000680152.1:ENST00000681887.1:ENST00000680129.1:ENST00000680786.1:ENST00000681223.1:ENST00000679717.1:ENST00000354289.9:ENST00000491027.6:ENST00000393618.6:ENST00000489358.5:ENST00000441045.6:ENST00000417537.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	101	2	1.76568	2.148375	2.53107	0.00911113	0.00860484	0.0855292	0.0784134
chr1	20769542	20769641	389683	0	-	0.363636	(0.35,0.378]	chr1	46549	15	INTRON	INTRON	HP1BP3	ENSG00000127483.19	ENST00000438032.6:ENST00000312239.10:ENST00000375003.6:ENST00000419948.5:ENST00000424732.5	protein_coding	protein_coding	protein_coding	protein_coding	9	111	2	1.81422	2.14836	2.4825	0.0226581	6.3584e-4	0.117618	0.0228285
chr7	130078804	130078904	3413677	0	+	0.34	(0.32,0.35]	chr7	319098	76	INTRON	INTRON	KLHDC10	ENSG00000128607.14	ENST00000335420.10:ENST00000463413.1:ENST00000468226.1	protein_coding	protein_coding	protein_coding	protein_coding	6	76	2	1.98909	2.1482	2.30731	0.0176772	0.0108865	0.10525	0.0923273
chr1	21762378	21762478	396662	0	-	0.4	(0.378,0.408]	chr1	47345	42	INTRON	INTRON	USP48	ENSG00000090686.16	ENST00000400301.5:ENST00000308271.14:ENST00000529637.5:ENST00000421625.6:ENST00000527823.5:ENST00000532737.1:ENST00000489108.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	62	2	1.76032	2.1481700000000004	2.53602	0.0721577	0.0020933	0.187433	0.0424943
chr8	17923950	17924037	3707735	0	+	0.402299	(0.378,0.408]	chr8	343810	4	INTRON	INTRON	PCM1	ENSG00000078674.19	ENST00000518930.1:ENST00000325083.13:ENST00000517730.5:ENST00000517545.5:ENST00000518537.5:ENST00000518936.5:ENST00000523055.5:ENST00000519253.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	10	106	2	1.73221	2.14817	2.56413	0.00963227	0.0024299	0.086971	0.0444645
chr1	174008967	174009066	587911	0	-	0.353535	(0.35,0.378]	chr1	70758	155	INTRON	INTRON	RC3H1	ENSG00000135870.12	ENST00000367696.7	protein_coding	protein_coding	protein_coding	protein_coding	7	86	2	1.93774	2.14806	2.35838	0.0149786	0.00468156	0.0994339	0.0631419
chr15	49218107	49218206	6019596	0	+	0.30303	(0.28,0.32]	chr15	573707	4	INTRON	INTRON	GALK2	ENSG00000156958.15	ENST00000559883.5:ENST00000559963.5:ENST00000327171.7:ENST00000560654.5:ENST00000558775.5:ENST00000559040.1:ENST00000396509.6:ENST00000558956.5:ENST00000559208.5:ENST00000560031.6:ENST00000560119.5:ENST00000558145.5:ENST00000544523.5:ENST00000560138.5:ENST00000559423.5:ENST00000559454.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	44	2	1.90263	2.14805	2.39347	0.0504457	0.0503272	0.17488	0.156383
chr15	68279561	68279660	6057436	0	+	0.292929	(0.28,0.32]	chr15	576649	5	INTRON	INTRON	FEM1B	ENSG00000169018.6	ENST00000306917.5	protein_coding	protein_coding	protein_coding	protein_coding	3	44	2	1.90263	2.14805	2.39347	0.0504457	0.0503272	0.17488	0.156383
chr15	75846188	75846288	6065088	0	+	0.34	(0.32,0.35]	chr15	577537	12	INTRON	INTRON	UBE2Q2	ENSG00000140367.12	ENST00000569423.5:ENST00000267938.9:ENST00000561723.5:ENST00000561851.5:ENST00000562635.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	76	2	1.76503	2.14805	2.53107	0.0240772	0.00860484	0.129859	0.0784134
chr2	97522525	97522625	1183548	0	-	0.31	(0.28,0.32]	chr2	126902	62	INTRON	INTRON	ANKRD36B	ENSG00000196912.13	ENST00000359901.9:ENST00000258459.12	protein_coding	protein_coding	protein_coding	protein_coding	3	44	2	1.90263	2.14805	2.39347	0.0504457	0.0503272	0.17488	0.156383
chr5	71534207	71534305	2384386	0	+	0.285714	(0.28,0.32]	chr5	229998	14	INTRON	INTRON	BDP1	ENSG00000145734.20	ENST00000358731.9:ENST00000508917.6:ENST00000514903.7:ENST00000525844.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	44	2	1.90263	2.14805	2.39347	0.0504457	0.0503272	0.17488	0.156383
chr16	1354802	1354902	6274190	0	+	0.61	(0.57,1]	chr16	599242	21	INTRON	INTRON	GNPTG	ENSG00000090581.11	ENST00000204679.9:ENST00000526820.5:ENST00000683366.1:ENST00000527876.5:ENST00000527168.6:ENST00000534197.5:ENST00000683887.1:ENST00000529110.2:ENST00000684126.1:ENST00000529957.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	45	2	1.83525	2.14804	2.46083	0.0110377	0.00255312	0.0873897	0.0466386
chr16	89804408	89804508	6544696	0	-	0.57	(0.515,0.57]	chr16	634588	3	INTRON	INTRON	FANCA	ENSG00000187741.16	ENST00000561667.2:ENST00000389301.8:ENST00000568369.6:ENST00000564475.6:ENST00000696275.1:ENST00000696287.1:ENST00000696286.1:ENST00000696274.1:ENST00000696291.1:ENST00000696276.1:ENST00000567205.2:ENST00000567284.7:ENST00000696277.1:ENST00000696292.1:ENST00000563767.2:ENST00000567621.6:ENST00000696288.1:ENST00000696293.1:ENST00000566889.5:ENST00000389302.7:ENST00000696294.1:ENST00000696295.1:ENST00000563673.5:ENST00000543736.5:ENST00000534992.5:ENST00000565582.5:ENST00000696296.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	30	2	1.86007	2.14798	2.43589	0.0526611	0.0370871	0.178401	0.139194
chr17	1392034	1392134	6699527	0	-	0.53	(0.515,0.57]	chr17	655552	219	INTRON	INTRON	YWHAE	ENSG00000108953.17	ENST00000264335.13:ENST00000571732.5:ENST00000573026.1:ENST00000573196.5:ENST00000575977.1:ENST00000469398.5:ENST00000486241.1:ENST00000489287.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	30	2	1.86007	2.14798	2.43589	0.0526611	0.0370871	0.178401	0.139194
chr19	5665018	5665114	7005737	0	+	0.541667	(0.515,0.57]	chr19	695032	7	EXON_MRNA	EXON_MRNA:INTRON	SAFB	ENSG00000160633.13	ENST00000589863.5:ENST00000588852.2:ENST00000292123.9:ENST00000592224.5:ENST00000454510.5:ENST00000591991.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	30	2	1.86007	2.14798	2.43589	0.0526611	0.0370871	0.178401	0.139194
chr2	61517730	61517828	1131014	0	-	0.408163	(0.378,0.408]	chr2	121606	29	INTRON	INTRON	XPO1	ENSG00000082898.19	ENST00000676553.1:ENST00000677556.1:ENST00000677814.1:ENST00000676771.1:ENST00000677803.1:ENST00000677239.1:ENST00000678790.1:ENST00000677928.1:ENST00000678182.1:ENST00000677150.1:ENST00000678172.1:ENST00000678360.1:ENST00000678081.1:ENST00000676889.1:ENST00000676783.1:ENST00000679035.1:ENST00000677422.1:ENST00000677417.1:ENST00000677813.1:ENST00000676999.1:ENST00000676667.1:ENST00000678263.1:ENST00000678877.1:ENST00000677933.1:ENST00000680228.1:ENST00000677289.1:ENST00000677190.1:ENST00000401558.7:ENST00000428210.5:ENST00000677290.1:ENST00000677850.1:ENST00000451765.6:ENST00000676789.1:ENST00000678741.1:ENST00000404992.6:ENST00000406957.5:ENST00000443240.5:ENST00000476585.5:ENST00000468259.1:ENST00000420673.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	14	158	2	1.63315	2.1479049999999997	2.66266	0.0141534	1.18377e-4	0.0959618	0.00930884
chr10	69169221	69169311	4445008	0	+	0.233333	[0,0.28]	chr10	410060	2	INTRON	INTRON	VPS26A	ENSG00000122958.15	ENST00000373382.5:ENST00000395098.5:ENST00000263559.11:ENST00000490696.5:ENST00000489794.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	99	2	1.21181	2.147705	3.0836	0.0620292	0.00940284	0.194122	0.0817766
chr11	66664156	66664256	4811292	0	+	0.47	(0.44,0.476]	chr11	447918	119	INTRON	INTRON	RBM4	ENSG00000173933.21	ENST00000396053.9	protein_coding	protein_coding	protein_coding	protein_coding	10	111	2	2.03549	2.147705	2.25992	0.0042121	0.00324123	0.0572185	0.0524329
chr1	246324323	246324422	678881	0	-	0.565657	(0.515,0.57]	chr1	79743	20	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000453676.5:ENST00000462422.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	62	2	1.56269	2.147635	2.73258	0.0319658	0.00260192	0.13174	0.0470772
chr5	53955917	53956017	2617363	0	-	0.38	(0.378,0.408]	chr5	248835	439	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	52	2	1.43665	2.147595	2.85854	0.0669652	0.0107837	0.183051	0.0920575
chr3	47766034	47766134	1684918	0	-	0.35	(0.32,0.35]	chr3	172116	197	INTRON	INTRON	SMARCC1	ENSG00000173473.11	ENST00000254480.10:ENST00000425518.5:ENST00000454240.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	111	2	1.88021	2.147565	2.41492	0.00751788	0.00513727	0.0773151	0.062965
chr6	7162774	7162874	2798915	0	+	0.32	(0.28,0.32]	chr6	263733	216	INTRON	INTRON	RREB1	ENSG00000124782.21	ENST00000379933.7:ENST00000491191.5:ENST00000471433.5:ENST00000379938.7:ENST00000467782.5:ENST00000349384.10:ENST00000334984.10:ENST00000475946.5:ENST00000483150.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	92	2	1.75863	2.147555	2.53648	0.0177071	0.00925866	0.11319	0.0817766
chr2	241323031	241323129	1053680	0	+	0.377551	(0.35,0.378]	chr2	112202	24	INTRON	INTRON	SEPTIN2	ENSG00000168385.18	ENST00000391973.6:ENST00000428282.5:ENST00000492978.5:ENST00000360051.7:ENST00000407017.5:ENST00000445030.5:ENST00000428524.5:ENST00000469434.5:ENST00000616972.4:ENST00000495463.5:ENST00000482304.5:ENST00000475474.5:ENST00000401990.5:ENST00000469175.5:ENST00000407971.5:ENST00000461048.5:ENST00000457335.5:ENST00000436795.5:ENST00000494824.5:ENST00000411484.5:ENST00000462147.5:ENST00000434955.5:ENST00000466211.5:ENST00000391971.7:ENST00000402092.6:ENST00000484740.1:ENST00000473479.5:ENST00000464128.5:ENST00000441533.5:ENST00000467971.5:ENST00000425899.5:ENST00000443492.5:ENST00000437066.5:ENST00000429791.5:ENST00000420786.5:ENST00000475823.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	13	156	2	1.70461	2.14742	2.59023	0.0137666	2.00948e-4	0.0949306	0.0124029
chr11	70277004	70277103	4820473	0	+	0.252525	[0,0.28]	chr11	449381	42	INTRON	INTRON	PPFIA1	ENSG00000131626.19	ENST00000253925.12:ENST00000389547.7:ENST00000532504.5:ENST00000530746.1:ENST00000532024.1:ENST00000648755.1:ENST00000644155.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	61	2	1.79953	2.1474	2.49527	0.0436497	0.0377477	0.156608	0.14882
chr19	28520417	28520517	7166299	0	-	0.51	(0.476,0.515]	chr19	724189	522	INTRON	INTRON	ENSG00000283403:ENSG00000267243	ENSG00000283403.1:ENSG00000267243.6	ENST00000592347.5:ENST00000593065.5	lncRNA	lncRNA	lncRNA	lncRNA	5	57	2	1.52615	2.14735	2.76855	0.0739267	0.00244302	0.190914	0.0456956
chr3	138789376	138789476	1831045	0	-	0.45	(0.44,0.476]	chr3	184056	189	INTRON	INTRON	PIK3CB	ENSG00000051382.9	ENST00000674063.1:ENST00000477593.5:ENST00000462898.5:ENST00000483968.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	61	2	2.00609	2.14728	2.28847	0.0360127	0.00692113	0.152355	0.0718189
chr3	143024118	143024206	1529317	0	+	0.363636	(0.35,0.378]	chr3	159391	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	U2SURP	ENSG00000163714.18	ENST00000488497.7:ENST00000473835.7:ENST00000493598.6:ENST00000463563.6:ENST00000488587.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	75	2	1.7942	2.14725	2.5003	0.0378648	0.00256148	0.141212	0.0466761
chr1	180698202	180698302	270258	0	+	0.34	(0.32,0.35]	chr1	31620	154	INTRON	INTRON	XPR1	ENSG00000143324.14	ENST00000367590.9:ENST00000367589.3	protein_coding	protein_coding	protein_coding	protein_coding	4	55	2	1.88909	2.147195	2.4053	0.0553737	0.0108284	0.165463	0.0920575
chr5	140483748	140483845	2503661	0	+	0.329897	(0.32,0.35]	chr5	239230	7	INTRON	INTRON	ANKHD1	ENSG00000131503.21	ENST00000297183.10:ENST00000360839.7:ENST00000421134.5:ENST00000246149.10:ENST00000412116.5	protein_coding	protein_coding	protein_coding	protein_coding	4	55	2	1.88909	2.147195	2.4053	0.0553737	0.0108284	0.165463	0.0920575
chr6	17672621	17672720	3065865	0	-	0.313131	(0.28,0.32]	chr6	284852	27	INTRON	INTRON	NUP153	ENSG00000124789.12	ENST00000613258.4:ENST00000537253.5:ENST00000262077.3	protein_coding	protein_coding	protein_coding	protein_coding	10	131	2	1.86208	2.14719	2.4323	0.0065898	0.00540168	0.0737338	0.0644179
chr10	58269804	58269903	4435046	0	+	0.434343	(0.408,0.44]	chr10	409058	1	INTRON	INTRON	CISD1	ENSG00000122873.12	ENST00000333926.6:ENST00000464703.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	49	2	1.93243	2.1471400000000003	2.36185	0.0441194	0.0133164	0.162255	0.094512
chr12	6577384	6577484	5259315	0	-	0.42	(0.408,0.44]	chr12	500681	2	SS5_PROX	SS5_PROX:INTRON	CHD4	ENSG00000111642.16	ENST00000645022.1:ENST00000544040.7:ENST00000544484.6:ENST00000357008.7:ENST00000647112.1:ENST00000642810.1:ENST00000642637.1:ENST00000647394.1:ENST00000643335.1:ENST00000643815.1:ENST00000647535.1:ENST00000646806.1:ENST00000644137.1:ENST00000642879.1:ENST00000646462.1:ENST00000644652.1:ENST00000645645.1:ENST00000642594.1:ENST00000646360.1:ENST00000646268.1:ENST00000645095.1:ENST00000644352.1:ENST00000645991.1:ENST00000642860.1:ENST00000647483.1:ENST00000646608.1:ENST00000644077.1:ENST00000643538.1:ENST00000645005.1:ENST00000645199.1:ENST00000643367.1:ENST00000646609.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	49	2	1.93243	2.1471400000000003	2.36185	0.0441194	0.0133164	0.162255	0.094512
chr19	49092203	49092302	7088445	0	+	0.515152	(0.476,0.515]	chr19	709545	13	INTRON	INTRON	SNRNP70	ENSG00000104852.15	ENST00000601065.5:ENST00000598984.5:ENST00000598441.6:ENST00000401730.5:ENST00000221448.9:ENST00000595231.5:ENST00000601411.1:ENST00000599687.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	35	2	1.72558	2.1471299999999998	2.56868	0.0767648	0.0256676	0.196164	0.133676
chr3	136150176	136150273	1823776	0	-	0.360825	(0.35,0.378]	chr3	183511	14	UTR3	UTR3:EXON_MRNA	MSL2	ENSG00000174579.4	ENST00000309993.3	protein_coding	protein_coding	protein_coding	protein_coding	8	86	2	1.69756	2.14706	2.59656	0.0149371	0.00638551	0.107462	0.0693551
chr15	28602690	28602789	5988042	0	+	0.50505	(0.476,0.515]	chr15	569254	20	INTRON	INTRON	HERC2P9	ENSG00000206149.11	ENST00000689985.1:ENST00000688694.1:ENST00000529537.2:ENST00000529624.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	5	57	2	1.97402	2.147015	2.32001	0.0206778	0.0136217	0.110999	0.101682
chr19	28496847	28496947	7166063	0	-	0.53	(0.515,0.57]	chr19	724189	286	INTRON	INTRON	ENSG00000283403:ENSG00000267243	ENSG00000283403.1:ENSG00000267243.6	ENST00000592347.5:ENST00000593065.5	lncRNA	lncRNA	lncRNA	lncRNA	39	326	2	1.65379	2.14701	2.64023	0.00132096	1.62558e-5	0.0333932	0.0032483
chr1	31040840	31040940	412647	0	-	0.43	(0.408,0.44]	chr1	49733	116	INTRON	INTRON	PUM1	ENSG00000134644.16	ENST00000426105.7:ENST00000373747.7:ENST00000257075.9:ENST00000424085.6:ENST00000525843.5:ENST00000440538.6:ENST00000373741.8:ENST00000373742.6:ENST00000526215.5:ENST00000525948.5:ENST00000480602.1:ENST00000524516.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	93	2	1.78881	2.147005	2.5052	0.0370259	5.05909e-4	0.139194	0.0202328
chr1	90956781	90956881	501873	0	-	0.37	(0.35,0.378]	chr1	59492	151	INTRON	INTRON	ZNF644	ENSG00000122482.22	ENST00000370440.5:ENST00000337393.10:ENST00000347275.9:ENST00000361321.5:ENST00000467231.5:ENST00000498303.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	75	2	2.13524	2.147005	2.15877	0.0130865	0.0102036	0.0934394	0.089002
chr15	38278815	38278915	5998611	0	+	0.45	(0.44,0.476]	chr15	570204	102	INTRON	INTRON	SPRED1	ENSG00000166068.13	ENST00000299084.9:ENST00000561205.1:ENST00000561317.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	47	2	1.9039	2.146965	2.39003	0.0501498	0.0106488	0.156383	0.0915714
chr19	10664802	10664901	7013317	0	+	0.444444	(0.44,0.476]	chr19	696757	89	INTRON	INTRON	ILF3	ENSG00000129351.17	ENST00000449870.5:ENST00000587928.5:ENST00000407004.7:ENST00000589998.5:ENST00000589600.5:ENST00000589283.5:ENST00000590009.5:ENST00000593199.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	47	2	1.9039	2.146965	2.39003	0.0501498	0.0106488	0.156383	0.0915714
chr12	110295297	110295396	5226240	0	+	0.464646	(0.44,0.476]	chr12	495240	28	INTRON	INTRON	ATP2A2	ENSG00000174437.18	ENST00000552636.2:ENST00000308664.10:ENST00000539276.7:ENST00000377685.9:ENST00000548169.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	24	235	2	1.99091	2.14694	2.30297	0.0012225	4.05417e-4	0.0320622	0.0181306
chr5	79658300	79658400	2399201	0	+	0.3	(0.28,0.32]	chr5	231745	9	INTRON	INTRON	TENT2	ENSG00000164329.14	ENST00000423041.6:ENST00000504233.5:ENST00000453514.6:ENST00000428308.6:ENST00000296783.7:ENST00000504982.1:ENST00000513735.5:ENST00000515298.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	13	183	2	2.10551	2.1469250000000004	2.18834	0.00329523	0.00221958	0.0511446	0.0435144
chr8	11786565	11786662	3702434	0	+	0.371134	(0.35,0.378]	chr8	343467	4	UTR3	UTR3:EXON_MRNA	NEIL2	ENSG00000154328.16	ENST00000436750.7:ENST00000455213.6:ENST00000403422.7:ENST00000284503.7:ENST00000524741.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	56	2	1.56881	2.1468949999999998	2.72498	0.047622	0.0168499	0.153019	0.11068
chr19	19389727	19389827	7035185	0	+	0.45	(0.44,0.476]	chr19	701429	32	INTRON	INTRON	GATAD2A	ENSG00000167491.18	ENST00000494516.6:ENST00000360315.7:ENST00000609040.5:ENST00000417582.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	67	2	1.90375	2.14689	2.39003	0.0156406	0.0106488	0.101393	0.0915714
chr16	71800320	71800419	6514392	0	-	0.454545	(0.44,0.476]	chr16	631208	105	INTRON	INTRON	AP1G1	ENSG00000166747.13	ENST00000299980.9:ENST00000569748.5:ENST00000393512.7:ENST00000565009.5:ENST00000568327.5:ENST00000450149.6:ENST00000563259.5:ENST00000563104.5:ENST00000569185.5:ENST00000566161.5:ENST00000567583.1:ENST00000565412.5:ENST00000569975.5:ENST00000570297.5:ENST00000570017.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	47	2	2.08277	2.1467799999999997	2.21079	0.0309998	0.0194581	0.13151	0.119831
chrX	3864955	3865048	7747238	0	-	0.473118	(0.44,0.476]	chrX	793121	7	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	ENSG00000285756	ENSG00000285756.2	ENST00000648217.1:ENST00000650456.1:ENST00000657698.1:ENST00000661656.1:ENST00000661924.1:ENST00000669719.1:ENST00000655273.1:ENST00000456563.1:ENST00000650538.1:ENST00000438107.1	lncRNA	lncRNA	lncRNA	lncRNA	4	47	2	2.08277	2.1467799999999997	2.21079	0.0309998	0.0194581	0.13151	0.119831
chrX	47655401	47655500	7814758	0	-	0.444444	(0.44,0.476]	chrX	796497	29	INTRON	INTRON	UXT	ENSG00000126756.12	ENST00000335890.3:ENST00000333119.7:ENST00000485641.5:ENST00000460840.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	47	2	2.08277	2.1467799999999997	2.21079	0.0309998	0.0194581	0.13151	0.119831
chr11	27498352	27498451	4937463	0	-	0.313131	(0.28,0.32]	chr11	462408	41	UTR3	UTR3:EXON_MRNA	LIN7C	ENSG00000148943.12	ENST00000278193.7:ENST00000524596.1	protein_coding	protein_coding	protein_coding	protein_coding	3	44	2	1.96475	2.14673	2.32871	0.0581621	0.0428385	0.167723	0.162255
chr11	9174279	9174376	4908146	0	-	0.329897	(0.32,0.35]	chr11	460058	3	INTRON	INTRON	DENND5A	ENSG00000184014.9	ENST00000328194.8:ENST00000681203.1:ENST00000530780.2:ENST00000680358.1:ENST00000679999.1:ENST00000680470.1:ENST00000680599.1:ENST00000680554.1:ENST00000679745.1:ENST00000680252.1:ENST00000681425.1:ENST00000681158.1:ENST00000679460.1:ENST00000679568.1:ENST00000679446.1:ENST00000680294.1:ENST00000680742.1:ENST00000680885.1:ENST00000680576.1:ENST00000530044.5:ENST00000526707.5:ENST00000681173.1:ENST00000527896.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	67	2	1.83315	2.14671	2.46027	0.0313348	0.0108973	0.144381	0.0873034
chr4	126709686	126709785	2237807	0	-	0.313131	(0.28,0.32]	chr4	219029	110	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	11	158	2	1.7812	2.1466849999999997	2.51217	0.0202528	4.22836e-4	0.110042	0.0184011
chr1	161129515	161129615	573930	0	-	0.32	(0.28,0.32]	chr1	69614	46	INTRON	INTRON	DEDD	ENSG00000158796.17	ENST00000368006.8:ENST00000472996.1:ENST00000545495.5:ENST00000458050.6:ENST00000489249.5:ENST00000490843.6:ENST00000486041.5:ENST00000368005.5:ENST00000464113.1:ENST00000473679.6:ENST00000463227.5:ENST00000496632.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	58	2	1.83303	2.146605	2.46018	0.0375904	0.0370023	0.156054	0.139194
chr11	86947565	86947664	5015215	0	-	0.424242	(0.408,0.44]	chr11	473062	20	UTR3	UTR3:EXON_MRNA	FZD4	ENSG00000174804.4	ENST00000531380.2	protein_coding	protein_coding	protein_coding	protein_coding	3	35	2	1.93243	2.14658	2.36073	0.0481658	0.0441194	0.162255	0.153019
chr11	87272455	87272555	4845162	0	+	0.41	(0.408,0.44]	chr11	451868	354	INTRON	INTRON	TMEM135	ENSG00000166575.17	ENST00000340353.11:ENST00000305494.6:ENST00000532959.5:ENST00000525018.5	protein_coding	protein_coding	protein_coding	protein_coding	3	35	2	1.93243	2.14658	2.36073	0.0481658	0.0441194	0.162255	0.153019
chr15	60379256	60379356	6195140	0	-	0.31	(0.28,0.32]	chr15	590323	42	INTRON	INTRON	ANXA2	ENSG00000182718.18	ENST00000396024.7:ENST00000559818.6:ENST00000679109.1:ENST00000676687.1:ENST00000558169.6:ENST00000557906.6:ENST00000558558.6:ENST00000559113.6:ENST00000559780.6:ENST00000559956.6:ENST00000560468.6:ENST00000678870.1:ENST00000678061.1:ENST00000678450.1:ENST00000677968.1:ENST00000451270.7:ENST00000558985.6:ENST00000678796.1:ENST00000559647.2:ENST00000332680.8:ENST00000560014.5:ENST00000504475.6:ENST00000421017.6:ENST00000560466.5:ENST00000558132.5:ENST00000561022.5:ENST00000560367.6:ENST00000558503.6:ENST00000558998.5:ENST00000559559.5:ENST00000560165.5:ENST00000560389.5:ENST00000559725.5:ENST00000559350.5:ENST00000558986.5:ENST00000677258.1:ENST00000559467.5:ENST00000561445.5:ENST00000557937.5:ENST00000557904.5:ENST00000559370.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	44	2	1.83771	2.14658	2.45545	0.0591725	0.0438092	0.189982	0.14901
chr15	101970229	101970329	6117557	0	+	0.42	(0.408,0.44]	chr15	582296	36	INTRON	INTRON	WASH3P	ENSG00000185596.16	ENST00000558686.5:ENST00000354296.9:ENST00000559163.6:ENST00000557932.5:ENST00000558784.5:ENST00000560956.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	3	35	2	1.93243	2.14658	2.36073	0.0481658	0.0441194	0.162255	0.153019
chr17	28084842	28084942	6582943	0	+	0.44	(0.408,0.44]	chr17	639837	229	INTRON	INTRON	NLK	ENSG00000087095.13	ENST00000407008.8:ENST00000496808.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	35	2	1.93243	2.14658	2.36073	0.0481658	0.0441194	0.162255	0.153019
chr5	133955894	133955990	2725589	0	-	0.28125	(0.28,0.32]	chr5	256396	5	UTR3	UTR3:EXON_MRNA	C5orf15	ENSG00000113583.8	ENST00000231512.5	protein_coding	protein_coding	protein_coding	protein_coding	3	44	2	1.83771	2.14658	2.45545	0.0591725	0.0438092	0.189982	0.14901
chr5	141548779	141548878	2739455	0	-	0.313131	(0.28,0.32]	chr5	258065	140	INTRON	INTRON	DIAPH1	ENSG00000131504.18	ENST00000647433.1:ENST00000389054.8:ENST00000518047.5:ENST00000491754.5:ENST00000518484.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	44	2	1.83771	2.14658	2.45545	0.0591725	0.0438092	0.189982	0.14901
chr4	39728933	39729033	1953300	0	+	0.5	(0.476,0.515]	chr4	195630	302	INTRON	INTRON	UBE2K	ENSG00000078140.14	ENST00000510934.5:ENST00000261427.10:ENST00000438068.6:ENST00000513231.5:ENST00000503368.5:ENST00000445950.2:ENST00000510719.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	16	161	2	1.61094	2.14652	2.6821	0.0075315	2.78154e-4	0.0773151	0.0153095
chr1	32119730	32119830	63570	0	+	0.44	(0.408,0.44]	chr1	8071	112	INTRON	INTRON	KPNA6	ENSG00000025800.14	ENST00000373625.8:ENST00000471599.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	65	2	1.84301	2.1465199999999998	2.45003	0.0174311	0.00990006	0.112689	0.0838372
chr8	67210982	67211082	3962456	0	-	0.52	(0.515,0.57]	chr8	363564	1	SS5_PROX	SS5_PROX:INTRON	ARFGEF1	ENSG00000066777.9	ENST00000520381.5:ENST00000518789.5:ENST00000262215.8:ENST00000518230.5	protein_coding	protein_coding	protein_coding	protein_coding	11	99	2	1.91091	2.1464950000000003	2.38208	0.00389995	0.00191752	0.0569466	0.0395751
chr1	182860882	182860981	273208	0	+	0.434343	(0.408,0.44]	chr1	31923	3	INTRON	INTRON	DHX9	ENSG00000135829.17	ENST00000367549.4	protein_coding	protein_coding	protein_coding	protein_coding	3	35	2	1.85305	2.146465	2.43988	0.0543543	0.0398236	0.182243	0.143072
chr13	95699929	95700029	5517423	0	+	0.44	(0.408,0.44]	chr13	527643	222	INTRON	INTRON	DNAJC3	ENSG00000102580.15	ENST00000602402.6:ENST00000376795.6	protein_coding	protein_coding	protein_coding	protein_coding	3	35	2	1.85305	2.146465	2.43988	0.0543543	0.0398236	0.182243	0.143072
chr2	32005287	32005387	1091064	0	-	0.32	(0.28,0.32]	chr2	116913	421	INTRON	INTRON	MEMO1:DPY30	ENSG00000162959.14:ENSG00000162961.14	ENST00000295065.9:ENST00000446765.5:ENST00000404530.6:ENST00000490459.5:ENST00000426310.6:ENST00000413686.1:ENST00000407893.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	17	237	2	1.88162	2.146465	2.41131	0.00587784	3.42226e-4	0.0669175	0.0164987
chr20	35493759	35493847	7262401	0	+	0.420455	(0.408,0.44]	chr20	737902	2	SS5_PROX	SS5_PROX:INTRON	CEP250	ENSG00000126001.16	ENST00000397527.6	protein_coding	protein_coding	protein_coding	protein_coding	3	35	2	1.85305	2.146465	2.43988	0.0543543	0.0398236	0.182243	0.143072
chr22	41282811	41282911	7591120	0	-	0.44	(0.408,0.44]	chr22	777373	4	INTRON	INTRON	RANGAP1	ENSG00000100401.20	ENST00000356244.8:ENST00000405486.5:ENST00000422838.1	protein_coding	protein_coding	protein_coding	protein_coding	3	35	2	1.85305	2.146465	2.43988	0.0543543	0.0398236	0.182243	0.143072
chr4	109818500	109818590	2021013	0	+	0.422222	(0.408,0.44]	chr4	200965	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GAR1	ENSG00000109534.17	ENST00000394631.7:ENST00000506840.5:ENST00000226796.7:ENST00000503671.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	35	2	1.85305	2.146465	2.43988	0.0543543	0.0398236	0.182243	0.143072
chr6	20461859	20461959	2828049	0	+	0.44	(0.408,0.44]	chr6	265583	218	INTRON	INTRON	E2F3	ENSG00000112242.16	ENST00000346618.8:ENST00000535432.2	protein_coding	protein_coding	protein_coding	protein_coding	3	35	2	1.85305	2.146465	2.43988	0.0543543	0.0398236	0.182243	0.143072
chr8	17998099	17998199	3708522	0	+	0.42	(0.408,0.44]	chr8	343990	41	INTRON	INTRON	PCM1	ENSG00000078674.19	ENST00000325083.13:ENST00000519253.5:ENST00000524226.5:ENST00000522275.5	protein_coding	protein_coding	protein_coding	protein_coding	3	35	2	1.85305	2.146465	2.43988	0.0543543	0.0398236	0.182243	0.143072
chr9	137324	137424	4226867	0	-	0.42	(0.408,0.44]	chr9	388550	19	INTRON	INTRON	CBWD1	ENSG00000172785.19	ENST00000356521.9:ENST00000377400.8:ENST00000475990.5:ENST00000619157.4:ENST00000314367.14:ENST00000612045.4:ENST00000475411.5:ENST00000611457.4:ENST00000465014.6:ENST00000613508.4:ENST00000382447.8:ENST00000487575.6:ENST00000495302.5:ENST00000462513.5:ENST00000616944.4:ENST00000613355.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	35	2	1.85305	2.146465	2.43988	0.0543543	0.0398236	0.182243	0.143072
chr12	62377813	62377912	5150743	0	+	0.232323	[0,0.28]	chr12	487371	29	INTRON	INTRON	USP15	ENSG00000135655.16	ENST00000353364.7:ENST00000280377.10:ENST00000547317.5:ENST00000549268.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	95	2	1.77685	2.146345	2.51584	0.0259533	0.0115397	0.133676	0.0889104
chr6	87243542	87243611	2914147	0	+	0.449275	(0.44,0.476]	chr6	275320	2	CDS	CDS:EXON_MRNA:INTRON	ZNF292	ENSG00000188994.13	ENST00000369577.8:ENST00000518845.1:ENST00000339907.8:ENST00000496806.2:ENST00000466062.2	protein_coding	protein_coding	protein_coding	protein_coding	4	42	2	1.75627	2.146335	2.5364	0.0380723	0.0309324	0.157702	0.13151
chr11	47840988	47841088	4952098	0	-	0.35	(0.32,0.35]	chr11	464642	4	SS3_PROX	SS3_PROX:INTRON	NUP160	ENSG00000030066.14	ENST00000694866.1:ENST00000378460.7:ENST00000530326.5:ENST00000528071.5:ENST00000528501.5:ENST00000526870.1:ENST00000694867.1:ENST00000529863.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	49	2	1.78201	2.1463099999999997	2.51061	0.0365003	0.0364463	0.153759	0.138959
chr2	161362685	161362785	901655	0	+	0.37	(0.35,0.378]	chr2	99704	435	INTRON	INTRON	PSMD14	ENSG00000115233.12	ENST00000409682.8:ENST00000437630.1	protein_coding	protein_coding	protein_coding	protein_coding	5	53	2	1.68908	2.146245	2.60341	0.0301354	0.0275785	0.142482	0.123904
chr9	69184686	69184786	4138221	0	+	0.36	(0.35,0.378]	chr9	377080	2	SS3_PROX	SS3_PROX:INTRON	TJP2	ENSG00000119139.21	ENST00000643713.1:ENST00000606364.5:ENST00000648087.1:ENST00000423935.6:ENST00000647986.1:ENST00000636438.1:ENST00000377259.5:ENST00000377245.9:ENST00000348208.9:ENST00000649114.1:ENST00000649943.1:ENST00000636247.1:ENST00000650333.1:ENST00000650522.1:ENST00000649783.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	53	2	1.68908	2.146245	2.60341	0.0301354	0.0275785	0.142482	0.123904
chr16	58557972	58558072	6495640	0	-	0.38	(0.378,0.408]	chr16	628545	1	SS5_PROX	SS5_PROX:INTRON	CNOT1	ENSG00000125107.19	ENST00000317147.10:ENST00000569240.5:ENST00000567188.5:ENST00000441024.6:ENST00000569732.1:ENST00000562046.1:ENST00000569882.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	32	339	2	1.9269	2.146225	2.36555	4.88524e-4	2.45491e-4	0.0199693	0.0144699
chr2	183149908	183150007	938740	0	+	0.464646	(0.44,0.476]	chr2	102995	159	INTRON	INTRON	NUP35	ENSG00000163002.13	ENST00000409798.5:ENST00000374930.7:ENST00000479162.5:ENST00000295119.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	65	2	1.64563	2.14616	2.64669	0.0363922	0.0040295	0.138959	0.0578376
chr11	125609898	125609993	4882805	0	+	0.410526	(0.408,0.44]	chr11	456493	1	SS5_PROX	SS5_PROX:INTRON	STT3A	ENSG00000134910.14	ENST00000529196.5:ENST00000392708.9:ENST00000649491.1:ENST00000531491.5:ENST00000526726.1:ENST00000524639.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	57	2	2.11447	2.1461550000000003	2.17784	0.0285207	0.00916282	0.12666	0.0855292
chr8	52710285	52710385	3951067	0	-	0.39	(0.378,0.408]	chr8	362390	230	INTRON	INTRON	RB1CC1	ENSG00000023287.13	ENST00000025008.10:ENST00000435644.6:ENST00000521611.1:ENST00000518710.5:ENST00000517963.1:ENST00000518211.1:ENST00000518468.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	90	2	1.98727	2.1461300000000003	2.30499	0.00683258	0.00639052	0.0726555	0.0713163
chr22	49574058	49574158	7601820	0	-	0.43	(0.408,0.44]	chr22	778566	1325	INTRON	INTRON	MIR3667HG	ENSG00000188511.13	ENST00000414287.5:ENST00000416411.1	lncRNA	lncRNA	lncRNA	lncRNA	9	85	2	1.46762	2.146115	2.82461	0.0267854	0.00241819	0.134871	0.0442901
chr15	84522692	84522792	6250884	0	-	0.44	(0.408,0.44]	chr15	596541	60	INTRON	INTRON	ENSG00000259244	ENSG00000259244.1	ENST00000560239.1	lncRNA	lncRNA	lncRNA	lncRNA	5	57	2	1.69172	2.1461	2.60048	0.0486032	0.00484324	0.153946	0.0640618
chr8	126263604	126263704	4051268	0	-	0.34	(0.32,0.35]	chr8	369353	1502	INTRON	INTRON	LINC00861	ENSG00000245164.9	ENST00000651482.1	lncRNA	lncRNA	lncRNA	lncRNA	3	42	2	1.88909	2.1460850000000002	2.40308	0.0553737	0.0417732	0.165463	0.161736
chr3	19979685	19979783	1376368	0	+	0.336735	(0.32,0.35]	chr3	145076	9	INTRON	INTRON	RAB5A	ENSG00000144566.11	ENST00000273047.9:ENST00000446547.5:ENST00000422242.1:ENST00000473608.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	80	2	1.8526	2.14608	2.43956	0.0332438	0.00352597	0.134145	0.0546236
chr7	65753184	65753277	3322753	0	+	0.408602	(0.408,0.44]	chr7	308952	5	INTRON	INTRON	CCT6P1	ENSG00000228409.7	ENST00000686363.1:ENST00000688735.1:ENST00000689814.1:ENST00000690196.1:ENST00000690636.1:ENST00000687809.1:ENST00000688944.1:ENST00000691983.1:ENST00000688184.1:ENST00000688478.1:ENST00000443108.7:ENST00000686689.1:ENST00000689785.1:ENST00000685316.1:ENST00000442266.3:ENST00000685398.1:ENST00000434500.6	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	6	67	2	1.84516	2.14595	2.44674	0.0193431	0.00868283	0.108861	0.0842798
chr11	125658046	125658145	4883321	0	+	0.414141	(0.408,0.44]	chr11	456613	10	INTRON	INTRON	CHEK1	ENSG00000149554.14	ENST00000428830.6:ENST00000524737.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	57	2	1.93002	2.145935	2.36185	0.022095	0.0133164	0.123903	0.094512
chr1	53837506	53837605	460606	0	-	0.525253	(0.515,0.57]	chr1	55451	15	INTRON	INTRON	NDC1	ENSG00000058804.12	ENST00000371429.4:ENST00000480952.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	103	2	1.41727	2.14588	2.87449	0.018658	4.10541e-4	0.117523	0.0186083
chr19	11092802	11092901	7016846	0	+	0.373737	(0.35,0.378]	chr19	697422	15	INTRON	INTRON	LDLR	ENSG00000130164.14	ENST00000557933.5:ENST00000558518.6:ENST00000545707.5:ENST00000535915.5:ENST00000455727.6:ENST00000557958.1:ENST00000560502.5:ENST00000558013.5:ENST00000252444.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	63	2	1.76773	2.14584	2.52395	0.0373863	0.00824736	0.155878	0.0773378
chr2	151450613	151450711	893632	0	+	0.663265	(0.57,1]	chr2	98976	37	INTRON	INTRON	RIF1	ENSG00000080345.18	ENST00000453091.6:ENST00000428287.6:ENST00000444746.7:ENST00000243326.9:ENST00000414861.6:ENST00000430328.6	protein_coding	protein_coding	protein_coding	protein_coding	4	24	2	1.92756	2.145835	2.36411	0.0408868	0.0220439	0.161534	0.115395
chr1	39571705	39571805	427743	0	-	0.5	(0.476,0.515]	chr1	51943	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	PABPC4	ENSG00000090621.15	ENST00000677006.1:ENST00000372858.8:ENST00000372856.7:ENST00000372857.7:ENST00000372862.7:ENST00000676523.1:ENST00000677548.1:ENST00000678980.1:ENST00000677244.1:ENST00000677609.1:ENST00000679246.1:ENST00000678287.1:ENST00000678625.1:ENST00000470443.6:ENST00000421687.6:ENST00000677644.1:ENST00000474378.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	116	2	1.87833	2.145805	2.41328	0.00471013	0.00355364	0.0600108	0.0547657
chr2	54981418	54981517	1120711	0	-	0.363636	(0.35,0.378]	chr2	120130	63	INTRON	INTRON	RTN4	ENSG00000115310.19	ENST00000394609.6:ENST00000404909.5:ENST00000394611.6:ENST00000317610.11:ENST00000357732.8:ENST00000337526.11:ENST00000357376.7:ENST00000405240.5:ENST00000486085.5:ENST00000438462.1	protein_coding	protein_coding	protein_coding	protein_coding	14	138	2	1.88383	2.145765	2.4077	0.0122026	0.00181734	0.0910127	0.0395263
chr14	101974214	101974314	5820317	0	+	0.5	(0.476,0.515]	chr14	551975	89	INTRON	INTRON	DYNC1H1	ENSG00000197102.14	ENST00000360184.10:ENST00000684561.1:ENST00000680313.1:ENST00000679720.1:ENST00000680715.1:ENST00000681283.1:ENST00000681822.1:ENST00000679910.1:ENST00000681574.1:ENST00000645039.2:ENST00000645149.2:ENST00000680200.1:ENST00000680120.1:ENST00000644881.2:ENST00000681066.1:ENST00000680423.1:ENST00000681536.1:ENST00000679486.1:ENST00000681010.1:ENST00000679629.1:ENST00000681123.1:ENST00000680874.1:ENST00000680137.1:ENST00000643508.2:ENST00000680808.1:ENST00000681311.1:ENST00000681859.1:ENST00000643684.1:ENST00000643958.2:ENST00000680001.1:ENST00000681668.1:ENST00000645114.2:ENST00000681751.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	43	2	1.63838	2.14553	2.65268	0.0555021	0.0201975	0.165463	0.121243
chr19	10808268	10808368	7014698	0	+	0.36	(0.35,0.378]	chr19	697018	3	SS3_PROX	SS3_PROX:INTRON	DNM2	ENSG00000079805.19	ENST00000355667.11:ENST00000389253.9:ENST00000585892.5:ENST00000359692.10:ENST00000408974.8:ENST00000587830.2:ENST00000681972.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	64	2	1.34988	2.145495	2.94111	0.0498069	0.0104563	0.17488	0.0855102
chr16	22494015	22494115	6322545	0	+	0.38	(0.378,0.408]	chr16	605439	18	INTRON	INTRON	NPIPB5	ENSG00000243716.11	ENST00000415654.5:ENST00000415833.6:ENST00000546168.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	21	234	2	1.99868	2.145305	2.29193	8.98196e-4	5.65048e-4	0.0274323	0.0219487
chr16	85573046	85573146	6415562	0	+	0.53	(0.515,0.57]	chr16	615470	163	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	20	183	2	2.03783	2.1452850000000003	2.25274	8.93482e-4	3.1503e-4	0.0275812	0.0159645
chr5	180513180	180513280	2562051	0	+	0.53	(0.515,0.57]	chr5	245082	172	INTRON	INTRON	CNOT6	ENSG00000113300.13	ENST00000261951.9:ENST00000393356.7:ENST00000507016.1:ENST00000618123.4:ENST00000502447.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	36	2	1.60221	2.14527	2.68833	0.0581855	0.0184931	0.188704	0.108861
chr4	39905855	39905952	2131471	0	-	0.268041	[0,0.28]	chr4	210187	13	INTRON	INTRON	PDS5A	ENSG00000121892.15	ENST00000303538.13:ENST00000503396.5:ENST00000513798.1:ENST00000512643.1:ENST00000503867.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	71	2	1.74425	2.145245	2.54624	0.0388449	0.0287343	0.143072	0.139835
chr7	130080303	130080403	3413692	0	+	0.36	(0.35,0.378]	chr7	319098	91	INTRON	INTRON	KLHDC10	ENSG00000128607.14	ENST00000335420.10:ENST00000463413.1:ENST00000468226.1	protein_coding	protein_coding	protein_coding	protein_coding	8	98	2	1.81422	2.145225	2.47623	0.0226581	0.0012627	0.117618	0.0329641
chr2	26386353	26386444	715423	0	+	0.43956	(0.408,0.44]	chr2	82616	1	CDS	CDS:EXON_MRNA	SELENOI	ENSG00000138018.19	ENST00000260585.12	protein_coding	protein_coding	protein_coding	protein_coding	6	65	2	1.79818	2.14518	2.49218	0.020428	0.00855168	0.122109	0.0780217
chr10	24646396	24646496	4581169	0	-	0.46	(0.44,0.476]	chr10	422181	109	INTRON	INTRON	ARHGAP21	ENSG00000107863.20	ENST00000612832.4:ENST00000396432.7:ENST00000680286.1:ENST00000376410.7:ENST00000446003.5:ENST00000476499.1:ENST00000416305.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	58	2	1.69402	2.1451700000000002	2.59632	0.0456129	0.00579248	0.164236	0.0662959
chr20	32632580	32632680	7326926	0	-	0.43	(0.408,0.44]	chr20	746150	5	UTR3	UTR3:EXON_MRNA	ENSG00000285382	ENSG00000285382.1	ENST00000645058.1:ENST00000642484.1:ENST00000642630.1:ENST00000646357.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	86	2	1.49523	2.145165	2.7951	0.0534846	8.18693e-4	0.180041	0.0264086
chr22	47713334	47713434	7540181	0	+	0.47	(0.44,0.476]	chr22	770719	22	INTRON	INTRON	ENSG00000224271	ENSG00000224271.7	ENST00000664761.1:ENST00000651071.1:ENST00000650683.1:ENST00000651536.1:ENST00000652499.1:ENST00000652656.1:ENST00000652072.1:ENST00000651445.1:ENST00000423737.5:ENST00000650660.1:ENST00000651056.1:ENST00000652611.1:ENST00000652399.1:ENST00000652123.1:ENST00000651311.1:ENST00000651458.1:ENST00000652505.1:ENST00000652702.2:ENST00000652334.1:ENST00000652030.2:ENST00000651403.1:ENST00000652228.1:ENST00000651124.1:ENST00000650972.1:ENST00000651985.1:ENST00000651637.1:ENST00000650924.1:ENST00000651003.1:ENST00000652168.1:ENST00000651948.2:ENST00000651293.1:ENST00000651939.1:ENST00000650787.1:ENST00000651517.1:ENST00000651662.1:ENST00000652690.1:ENST00000651638.1:ENST00000670853.1:ENST00000652750.1:ENST00000652080.1:ENST00000651294.1:ENST00000652164.1:ENST00000651538.1:ENST00000650775.1:ENST00000651983.1:ENST00000651033.1:ENST00000651584.1:ENST00000650884.1:ENST00000651270.1	lncRNA	lncRNA	lncRNA	lncRNA	10	108	2	1.73299	2.145165	2.55734	0.014376	7.72402e-4	0.0968323	0.0255867
chr4	70943282	70943382	1970915	0	+	0.42	(0.408,0.44]	chr4	197576	4	SS5_PROX	SS5_PROX:INTRON	MOB1B	ENSG00000173542.9	ENST00000502869.5:ENST00000509041.5:ENST00000309395.7:ENST00000396051.2:ENST00000511449.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	49	2	1.70409	2.145165	2.58624	0.028108	0.0273686	0.137011	0.123904
chr10	63520737	63520837	4635941	0	-	0.52	(0.515,0.57]	chr10	426242	549	INTRON	INTRON	JMJD1C	ENSG00000171988.20	ENST00000633035.1	protein_coding	processed_transcript	protein_coding	processed_transcript	3	30	2	1.94945	2.1451599999999997	2.34087	0.0469761	0.0414068	0.161557	0.151917
chr10	97252324	97252424	4674751	0	-	0.54	(0.515,0.57]	chr10	430777	56	INTRON	INTRON	ARHGAP19	ENSG00000213390.11	ENST00000492211.5:ENST00000358308.7:ENST00000358531.9:ENST00000487035.1:ENST00000371027.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	30	2	1.94945	2.1451599999999997	2.34087	0.0469761	0.0414068	0.161557	0.151917
chr15	67119916	67120016	6052390	0	+	0.53	(0.515,0.57]	chr15	576266	205	INTRON	INTRON	SMAD3	ENSG00000166949.17	ENST00000559460.5:ENST00000327367.9:ENST00000679624.1:ENST00000559937.1:ENST00000559092.1:ENST00000560175.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	30	2	1.94945	2.1451599999999997	2.34087	0.0469761	0.0414068	0.161557	0.151917
chr2	53923719	53923819	1120088	0	-	0.55	(0.515,0.57]	chr2	120023	3	SS3_PROX	SS3_PROX:INTRON	PSME4	ENSG00000068878.15	ENST00000404125.6:ENST00000389993.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	30	2	1.94945	2.1451599999999997	2.34087	0.0469761	0.0414068	0.161557	0.151917
chr17	66420011	66420111	6663472	0	+	0.48	(0.476,0.515]	chr17	650326	558	INTRON	INTRON	PRKCA	ENSG00000154229.12	ENST00000413366.8:ENST00000578063.5:ENST00000284384.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	68	2	2.11679	2.14513	2.17347	0.0115627	0.010447	0.0962115	0.0855102
chr1	32392282	32392382	415174	0	-	0.41	(0.408,0.44]	chr1	50088	50	INTRON	INTRON	BSDC1	ENSG00000160058.19	ENST00000455895.7:ENST00000444377.5:ENST00000341071.11:ENST00000526031.5:ENST00000419121.6:ENST00000446293.6:ENST00000373520.8:ENST00000527513.5:ENST00000527163.5:ENST00000530485.1:ENST00000474414.5:ENST00000530876.5:ENST00000530753.1:ENST00000533084.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	87	2	1.9279	2.14509	2.36228	0.00807087	0.00528443	0.0806514	0.0635846
chr12	111555097	111555192	5412788	0	-	0.284211	(0.28,0.32]	chr12	516933	5	INTRON	INTRON	ATXN2	ENSG00000204842.18	ENST00000642389.2:ENST00000608853.5:ENST00000672613.1:ENST00000673436.1:ENST00000643669.2:ENST00000616825.4:ENST00000389153.10:ENST00000550104.5:ENST00000483311.6:ENST00000672335.1:ENST00000673557.1:ENST00000673283.1:ENST00000673449.1:ENST00000535949.5:ENST00000542287.6:ENST00000644883.1:ENST00000647305.1:ENST00000671792.1:ENST00000392645.6:ENST00000672105.1:ENST00000549455.1:ENST00000548492.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	53	2	1.6633	2.14508	2.62686	0.0522231	0.0289217	0.177274	0.1274
chr19	904321	904421	7110849	0	-	0.46	(0.44,0.476]	chr19	714174	13	INTRON	INTRON	R3HDM4	ENSG00000198858.10	ENST00000589428.5:ENST00000361574.10:ENST00000587975.2:ENST00000590454.2:ENST00000589445.1:ENST00000626716.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	57	2	2.02558	2.1450500000000003	2.26452	0.0363567	0.00654074	0.138959	0.0735539
chr21	39269598	39269698	7465091	0	-	0.32	(0.28,0.32]	chr21	760509	3	SS5_PROX	SS5_PROX:INTRON	BRWD1	ENSG00000185658.14	ENST00000333229.6:ENST00000342449.8:ENST00000380800.7:ENST00000430093.5:ENST00000445245.5:ENST00000445668.5:ENST00000412604.1:ENST00000455867.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	53	2	1.61031	2.1450299999999998	2.67975	0.0600513	0.0252505	0.190658	0.12011
chr13	110902978	110903077	5650525	0	-	0.313131	(0.28,0.32]	chr13	538370	19	INTRON	INTRON	ANKRD10	ENSG00000088448.14	ENST00000267339.6:ENST00000489973.6:ENST00000310847.8:ENST00000465753.1:ENST00000494859.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	17	229	2	2.11599	2.14497	2.17395	0.00349625	8.29346e-4	0.0523494	0.0263691
chr21	37082181	37082279	7404910	0	+	0.336735	(0.32,0.35]	chr21	754522	7	UTR5	UTR5:EXON_MRNA:INTRON	TTC3	ENSG00000182670.14	ENST00000492275.6:ENST00000418766.6:ENST00000485402.5:ENST00000450533.6:ENST00000438055.5:ENST00000696812.1:ENST00000696811.1:ENST00000463216.6:ENST00000481605.6:ENST00000540756.5:ENST00000494243.5:ENST00000399010.5:ENST00000411496.2:ENST00000399017.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	99	2	1.50602	2.144965	2.78391	0.0248261	0.00347285	0.132101	0.052042
chr5	32161659	32161758	2597389	0	-	0.474747	(0.44,0.476]	chr5	246744	174	INTRON	INTRON	GOLPH3	ENSG00000113384.14	ENST00000265070.7:ENST00000503610.5:ENST00000512668.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	99	2	2.03286	2.1449499999999997	2.25704	0.00977911	0.0018274	0.0835427	0.0396683
chr20	38427521	38427600	7342230	0	-	0.481013	(0.476,0.515]	chr20	748313	2	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	SNHG17	ENSG00000196756.14	ENST00000654008.2:ENST00000658076.1:ENST00000662982.2:ENST00000456953.7:ENST00000654183.2:ENST00000663540.2:ENST00000651115.2:ENST00000660885.2:ENST00000662213.1:ENST00000665233.2:ENST00000666268.2:ENST00000665735.1:ENST00000660558.2:ENST00000691280.1:ENST00000658488.2:ENST00000688336.1:ENST00000668054.2:ENST00000690441.1:ENST00000655520.2:ENST00000687490.1:ENST00000664626.1:ENST00000658051.1:ENST00000668042.1:ENST00000686971.1:ENST00000663187.1:ENST00000669114.1:ENST00000653343.1:ENST00000666225.1:ENST00000657868.1:ENST00000663534.1:ENST00000658141.1:ENST00000689917.1:ENST00000664073.2:ENST00000653697.1:ENST00000656320.1:ENST00000686814.1:ENST00000417578.7:ENST00000654853.1:ENST00000665440.1:ENST00000436764.7:ENST00000668482.2:ENST00000671249.1:ENST00000655692.1:ENST00000662568.1:ENST00000659255.1:ENST00000693250.1:ENST00000691368.1:ENST00000693227.1:ENST00000690361.1:ENST00000670051.1:ENST00000667912.1:ENST00000693665.1:ENST00000665181.1:ENST00000687532.1:ENST00000691386.1:ENST00000693684.1:ENST00000666331.1:ENST00000669480.1:ENST00000658905.1:ENST00000661252.1:ENST00000669137.1:ENST00000688133.1:ENST00000689414.1:ENST00000691314.1:ENST00000669033.1:ENST00000686145.1:ENST00000653938.1:ENST00000663784.1:ENST00000665003.1:ENST00000659400.1:ENST00000653753.1:ENST00000449469.5:ENST00000654389.1:ENST00000657429.1:ENST00000656023.1:ENST00000692262.1:ENST00000414142.5:ENST00000670958.1:ENST00000657216.2:ENST00000664636.1:ENST00000657843.1:ENST00000660189.1:ENST00000660064.1:ENST00000423536.6:ENST00000658455.1:ENST00000666419.1:ENST00000413755.5	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	25	276	2	1.31757	2.1448650000000002	2.97216	0.0169416	7.63365e-6	0.110899	0.00207822
chr11	68473902	68474002	4817464	0	+	0.35	(0.32,0.35]	chr11	448907	127	INTRON	INTRON	PPP6R3	ENSG00000110075.15	ENST00000530427.5:ENST00000528635.5:ENST00000529907.5:ENST00000533127.5:ENST00000534534.5:ENST00000529344.5:ENST00000524845.5:ENST00000393800.7:ENST00000265637.8:ENST00000524904.5:ENST00000393801.7:ENST00000265636.9:ENST00000529710.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	76	2	2.02327	2.144835	2.2664	0.0199969	0.00956045	0.109608	0.0863913
chr19	21458080	21458180	7158785	0	-	0.34	(0.32,0.35]	chr19	723695	11	INTRON	INTRON	ENSG00000268119	ENSG00000268119.7	ENST00000596705.5:ENST00000597444.6:ENST00000594557.1:ENST00000599993.7:ENST00000600469.7:ENST00000656526.1:ENST00000663704.1:ENST00000593653.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	7	92	2	1.96288	2.14483	2.32678	0.0239991	0.00272092	0.119664	0.0481508
chr3	6573066	6573165	1356973	0	+	0.575758	(0.57,1]	chr3	142512	144	INTRON	INTRON	ENSG00000189229	ENSG00000189229.12	ENST00000433639.1:ENST00000655754.1:ENST00000653839.1:ENST00000662846.1:ENST00000414438.2:ENST00000658468.1:ENST00000669512.1:ENST00000667028.1:ENST00000655541.1:ENST00000668643.1:ENST00000671568.1:ENST00000671036.1:ENST00000669798.1:ENST00000655753.1:ENST00000655856.1:ENST00000658398.1:ENST00000661518.1:ENST00000661279.1:ENST00000655495.1:ENST00000663041.1:ENST00000659827.1:ENST00000667716.1:ENST00000662508.1:ENST00000668416.1:ENST00000658133.1:ENST00000342990.4:ENST00000660054.1:ENST00000671370.1	lncRNA	lncRNA	lncRNA	lncRNA	24	130	2	2.10995	2.1447849999999997	2.17962	1.99101e-4	1.87542e-4	0.0129457	0.011951
chr12	76048129	76048228	5369826	0	-	0.333333	(0.32,0.35]	chr12	512241	117	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NAP1L1	ENSG00000187109.15	ENST00000618691.5:ENST00000552056.5:ENST00000393263.7:ENST00000431879.7:ENST00000552147.5:ENST00000547773.5:ENST00000552013.1:ENST00000544816.5:ENST00000542344.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	118	2	1.93994	2.14478	2.34962	0.0084207	0.00342953	0.0825628	0.0517761
chr9	37145297	37145397	4117906	0	+	0.25	[0,0.28]	chr9	375375	3	SS5_PROX	SS5_PROX:INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000322831.6:ENST00000461038.5:ENST00000488607.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	170	2	1.67393	2.1447700000000003	2.61561	0.0110811	0.00342598	0.0930774	0.0517761
chr11	65426966	65427066	4805812	0	+	0.42	(0.408,0.44]	chr11	446554	43	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	79	795	2	2.0644	2.14475	2.2251	1.21593e-4	5.10704e-5	0.00992813	0.00585477
chr12	76064278	76064378	5370014	0	-	0.33	(0.32,0.35]	chr12	512308	28	INTRON	INTRON	NAP1L1	ENSG00000187109.15	ENST00000618691.5:ENST00000552056.5:ENST00000393263.7:ENST00000431879.7:ENST00000552147.5:ENST00000547773.5:ENST00000544816.5:ENST00000542344.5:ENST00000535020.6:ENST00000549596.5:ENST00000552342.5:ENST00000547529.6:ENST00000548044.5:ENST00000550934.5:ENST00000551992.5:ENST00000548273.5:ENST00000551600.5:ENST00000547704.5:ENST00000551524.5:ENST00000549988.5:ENST00000547479.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	58	2	1.84365	2.144725	2.4458	0.0425977	0.0184323	0.148082	0.116493
chr17	46166444	46166543	6784604	0	-	0.494949	(0.476,0.515]	chr17	669232	92	INTRON	INTRON	KANSL1	ENSG00000120071.15	ENST00000574590.6:ENST00000572904.6:ENST00000432791.7:ENST00000575318.6:ENST00000638275.1:ENST00000262419.10:ENST00000648792.1:ENST00000639531.1:ENST00000639150.1:ENST00000639853.1:ENST00000571698.2:ENST00000639375.1:ENST00000638269.1:ENST00000576248.2:ENST00000639356.1:ENST00000574655.6:ENST00000639099.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	9	94	2	1.50655	2.14468	2.78281	0.0316424	6.29551e-4	0.13151	0.0226349
chr1	211277316	211277416	305880	0	+	0.37	(0.35,0.378]	chr1	35265	5	INTRON	INTRON	RCOR3	ENSG00000117625.14	ENST00000533469.5:ENST00000367006.8:ENST00000419091.7:ENST00000452621.6:ENST00000528926.5:ENST00000529572.5:ENST00000367005.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	38	2	2.04358	2.1444650000000003	2.24535	0.0647516	0.0329533	0.179192	0.145171
chr2	172579597	172579696	920142	0	+	0.363636	(0.35,0.378]	chr2	101374	84	INTRON	INTRON	PDK1	ENSG00000152256.14	ENST00000392571.6:ENST00000410055.5:ENST00000282077.8:ENST00000466437.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	38	2	2.04358	2.1444650000000003	2.24535	0.0647516	0.0329533	0.179192	0.145171
chr3	47594125	47594225	1683163	0	-	0.36	(0.35,0.378]	chr3	171963	29	INTRON	INTRON	SMARCC1	ENSG00000173473.11	ENST00000254480.10:ENST00000425518.5:ENST00000492896.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	38	2	2.04358	2.1444650000000003	2.24535	0.0647516	0.0329533	0.179192	0.145171
chr7	128566621	128566721	3407710	0	+	0.36	(0.35,0.378]	chr7	318333	325	INTRON	INTRON	ENSG00000280828	ENSG00000280828.1	ENST00000479267.2	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	3	38	2	2.04358	2.1444650000000003	2.24535	0.0647516	0.0329533	0.179192	0.145171
chr3	197953187	197953287	1598762	0	+	0.48	(0.476,0.515]	chr3	165713	3	SS3_PROX	SS3_PROX:INTRON	RPL35A	ENSG00000182899.17	ENST00000647248.2:ENST00000448864.6:ENST00000485439.5:ENST00000642387.1:ENST00000329092.12:ENST00000429437.5:ENST00000442341.5:ENST00000439255.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	105	2	1.91368	2.1444550000000002	2.37523	0.0135123	0.00132439	0.101363	0.0332819
chr4	17823970	17824070	1927192	0	+	0.42	(0.408,0.44]	chr4	193749	2	SS5_PROX	SS5_PROX:INTRON	NCAPG	ENSG00000109805.10	ENST00000251496.7:ENST00000514176.5:ENST00000510063.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	69	2	1.28292	2.144435	3.00595	0.0429534	0.00781452	0.162255	0.0759016
chr1	246930030	246930130	681944	0	-	0.32	(0.28,0.32]	chr1	80043	113	INTRON	INTRON	AHCTF1	ENSG00000153207.16	ENST00000648844.2:ENST00000326225.3:ENST00000366508.5	protein_coding	protein_coding	protein_coding	protein_coding	8	115	2	2.11048	2.14433	2.17818	0.00956764	0.00555379	0.0820838	0.0675078
chr11	2973073	2973171	4891799	0	-	0.387755	(0.378,0.408]	chr11	458333	4	INTRON	INTRON	NAP1L4	ENSG00000205531.13	ENST00000620138.4:ENST00000380542.9:ENST00000526115.5:ENST00000532325.6:ENST00000448187.5:ENST00000399614.6:ENST00000430811.5:ENST00000529361.5:ENST00000528968.5:ENST00000530064.5:ENST00000526842.5:ENST00000531291.5:ENST00000455338.6:ENST00000534372.1	protein_coding	protein_coding	protein_coding	protein_coding	10	114	2	1.9089	2.144295	2.37969	0.00763296	0.00190547	0.0752119	0.0403738
chr1	201995054	201995153	292632	0	+	0.40404	(0.378,0.408]	chr1	33706	52	INTRON	INTRON	RNPEP	ENSG00000176393.11	ENST00000481780.5:ENST00000295640.9:ENST00000367286.7:ENST00000487116.5:ENST00000492587.5:ENST00000471105.5:ENST00000447312.5:ENST00000478617.5:ENST00000479726.5:ENST00000492849.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	12	135	2	1.65121	2.1442200000000002	2.63723	0.0160595	2.5238e-4	0.101453	0.0141412
chr2	55036217	55036317	1121267	0	-	0.36	(0.35,0.378]	chr2	120163	76	INTRON	INTRON	RTN4	ENSG00000115310.19	ENST00000404909.5:ENST00000394611.6:ENST00000317610.11:ENST00000357732.8:ENST00000337526.11:ENST00000357376.7:ENST00000405240.5:ENST00000438462.1:ENST00000427710.5	protein_coding	protein_coding	protein_coding	protein_coding	8	90	2	2.0519	2.144205	2.23651	0.020879	0.00332946	0.111766	0.0528877
chr3	37259461	37259561	1395916	0	+	0.31	(0.28,0.32]	chr3	146319	76	INTRON	INTRON	GOLGA4	ENSG00000144674.17	ENST00000435830.6:ENST00000444882.5:ENST00000356847.8:ENST00000450863.6:ENST00000361924.7:ENST00000429018.5:ENST00000431105.1:ENST00000419177.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	166	2	2.01853	2.1441600000000003	2.26979	0.0131536	7.29271e-4	0.0938857	0.0246094
chrX	110080722	110080821	7700817	0	+	0.515152	(0.476,0.515]	chrX	788140	130	INTRON	INTRON	TMEM164	ENSG00000157600.12	ENST00000372072.7:ENST00000372073.5:ENST00000372068.7:ENST00000288381.4:ENST00000461715.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	56	2	1.4095	2.144145	2.87879	0.054012	0.00999149	0.16443	0.0879541
chr16	81501592	81501692	6405567	0	+	0.47	(0.44,0.476]	chr16	615031	57	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6	protein_coding	protein_coding	protein_coding	protein_coding	7	75	2	1.7899	2.144065	2.49823	0.0158205	0.00718224	0.101453	0.0756118
chr1	89530775	89530874	157459	0	+	0.575758	(0.57,1]	chr1	17165	34	INTRON	INTRON	LRRC8B	ENSG00000197147.15	ENST00000330947.7:ENST00000439853.6:ENST00000449440.5:ENST00000640258.1:ENST00000639264.1	protein_coding	protein_coding	protein_coding	protein_coding	4	25	2	1.9042	2.144055	2.38391	0.0476976	0.0104374	0.153019	0.0902296
chr12	62467418	62467518	5151165	0	+	0.49	(0.476,0.515]	chr12	487450	1	SS5_PROX	SS5_PROX:INTRON	MON2	ENSG00000061987.16	ENST00000641654.1:ENST00000546600.5:ENST00000393630.8:ENST00000549378.5:ENST00000547095.5:ENST00000552738.5:ENST00000393629.6:ENST00000552115.5:ENST00000549286.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	42	2	1.80284	2.144055	2.48527	0.03496	0.033161	0.145899	0.13747500000000001
chr10	28582998	28583098	4414304	0	+	0.31	(0.28,0.32]	chr10	407149	2	SS3_PROX	SS3_PROX:INTRON	WAC	ENSG00000095787.24	ENST00000680735.1:ENST00000375664.8:ENST00000428935.6:ENST00000651598.1:ENST00000628285.3:ENST00000681112.1:ENST00000679570.1:ENST00000375646.5:ENST00000354911.9:ENST00000347934.8:ENST00000420266.6:ENST00000651885.1:ENST00000651441.1:ENST00000679398.1:ENST00000424454.5:ENST00000442148.6:ENST00000448193.5:ENST00000414108.6:ENST00000679428.1:ENST00000439676.5:ENST00000345541.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	76	2	1.50806	2.14405	2.78004	0.0317995	0.0193244	0.14477	0.108861
chr4	79974238	79974337	2169548	0	-	0.313131	(0.28,0.32]	chr4	213849	93	INTRON	INTRON	ANTXR2	ENSG00000163297.18	ENST00000403729.7:ENST00000449651.5:ENST00000679571.1:ENST00000681710.1:ENST00000680913.1:ENST00000681115.1:ENST00000404191.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	60	2	1.81582	2.14396	2.4721	0.068122	0.00906617	0.184298	0.0854289
chr7	102371644	102371744	3371151	0	+	0.27	[0,0.28]	chr7	315430	52	INTRON	INTRON	PRKRIP1:ENSG00000239969	ENSG00000128563.13:ENSG00000239969.6	ENST00000477886.5:ENST00000469763.5:ENST00000482549.5:ENST00000496391.5:ENST00000484974.5:ENST00000492837.1:ENST00000482465.5	protein_coding	protein_coding	protein_coding:transcribed_unprocessed_pseudogene	protein_coding:processed_transcript	5	73	2	1.90035	2.14396	2.38757	0.0552962	0.0173564	0.165463	0.112318
chr7	155701107	155701203	3452466	0	+	0.21875	[0,0.28]	chr7	322677	2	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	RBM33	ENSG00000184863.11	ENST00000287912.7:ENST00000401878.8:ENST00000392759.7:ENST00000307403.6:ENST00000440108.5:ENST00000392761.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	115	2	1.8592	2.143955	2.42871	0.0250628	0.00461175	0.12011	0.0626113
chrX	121371253	121371353	7716179	0	+	0.47	(0.44,0.476]	chrX	789396	3	PRIMIRNA	PRIMIRNA	MIR3672	ENSG00000265456.1	ENST00000584290.1	miRNA	primary_miRNA	miRNA	primary_miRNA	22	211	2	1.61744	2.14395	2.67046	0.00407677	1.78791e-4	0.0580863	0.0121697
chr20	837004	837101	7219468	0	+	0.360825	(0.35,0.378]	chr20	733614	5	INTRON	INTRON	FAM110A	ENSG00000125898.13	ENST00000381941.8:ENST00000304189.6:ENST00000381939.1:ENST00000246100.3	protein_coding	protein_coding	protein_coding	protein_coding	4	47	2	1.56287	2.143925	2.72498	0.0697648	0.0168499	0.184298	0.11068
chr7	157177304	157177402	3454328	0	+	0.408163	(0.378,0.408]	chr7	322924	19	INTRON	INTRON	UBE3C	ENSG00000009335.18	ENST00000611269.4:ENST00000348165.10:ENST00000389103.4	protein_coding	protein_coding	protein_coding	protein_coding	5	59	2	2.05897	2.14378	2.22859	0.0339294	0.00763308	0.134508	0.0777238
chr5	141611209	141611309	2740111	0	-	0.37	(0.35,0.378]	chr5	258168	226	INTRON	INTRON	DIAPH1	ENSG00000131504.18	ENST00000647433.1:ENST00000389054.8:ENST00000518047.5:ENST00000523100.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	85	2	2.13524	2.143765	2.15229	0.0130865	0.00545124	0.0934394	0.0669407
chr1	54353621	54353721	463232	0	-	0.61	(0.57,1]	chr1	55780	179	INTRON	INTRON	SSBP3	ENSG00000157216.16	ENST00000610401.5:ENST00000357475.9:ENST00000371319.8:ENST00000417664.7:ENST00000533946.6:ENST00000326956.12:ENST00000371320.8:ENST00000525990.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	25	2	2.05026	2.143685	2.23711	0.0321326	0.0172108	0.145026	0.104099
chr15	64546446	64546546	6044948	0	+	0.59	(0.57,1]	chr15	575696	435	INTRON	INTRON	ZNF609	ENSG00000180357.10	ENST00000326648.5:ENST00000558680.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	25	2	2.05026	2.143685	2.23711	0.0321326	0.0172108	0.145026	0.104099
chr4	765539	765639	2093253	0	-	0.65	(0.57,1]	chr4	206819	23	INTRON	INTRON	ENSG00000249592	ENSG00000249592.7	ENST00000660016.1:ENST00000665579.1:ENST00000503571.5	lncRNA	lncRNA	lncRNA	lncRNA	4	25	2	2.05026	2.143685	2.23711	0.0321326	0.0172108	0.145026	0.104099
chr1	29071903	29072002	60554	0	+	0.323232	(0.32,0.35]	chr1	7748	14	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000647918.1:ENST00000646800.1:ENST00000644342.1:ENST00000646189.1:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000373798.5:ENST00000644600.1:ENST00000649674.1:ENST00000643173.1:ENST00000343067.9:ENST00000644780.1:ENST00000650265.1:ENST00000643604.1:ENST00000349460.9:ENST00000645111.1:ENST00000643302.1:ENST00000636666.1:ENST00000644848.1:ENST00000646871.1:ENST00000488277.1:ENST00000490308.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	115	2	1.65616	2.143655	2.63115	0.009497	0.00608073	0.0863579	0.0676501
chr1	8749935	8750035	373106	0	-	0.5	(0.476,0.515]	chr1	43545	469	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000656437.1:ENST00000659924.1:ENST00000480342.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	65	2	1.58842	2.14364	2.69886	0.0406588	0.00385209	0.161534	0.0542786
chr3	72418209	72418309	1745637	0	-	0.28	[0,0.28]	chr3	177368	377	INTRON	INTRON	RYBP	ENSG00000163602.12	ENST00000477973.5	protein_coding	protein_coding	protein_coding	protein_coding	4	62	2	1.95669	2.1436200000000003	2.33055	0.062338	0.0237518	0.175343	0.129075
chr2	101287275	101287375	1199332	0	-	0.31	(0.28,0.32]	chr2	128163	7	INTRON	INTRON	RNF149	ENSG00000163162.9	ENST00000424632.5:ENST00000295317.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	87	2	1.9021	2.14357	2.38504	0.0304779	0.00475871	0.130699	0.0636201
chr11	6930099	6930198	4727929	0	+	0.343434	(0.32,0.35]	chr11	437673	19	INTRON	INTRON	ZNF215	ENSG00000149054.16	ENST00000527171.5:ENST00000610573.4:ENST00000636097.1:ENST00000278319.10:ENST00000636606.1:ENST00000529755.1:ENST00000414517.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	60	2	1.57443	2.14356	2.71269	0.048436	0.0181461	0.153635	0.114853
chr22	41106730	41106830	7521635	0	+	0.47	(0.44,0.476]	chr22	768515	133	INTRON	INTRON	EP300	ENSG00000100393.14	ENST00000263253.9:ENST00000674155.1	protein_coding	protein_coding	protein_coding	protein_coding	3	35	2	2.0776	2.143545	2.20949	0.0672585	0.0292951	0.183051	0.141862
chr7	128565521	128565621	3407699	0	+	0.47	(0.44,0.476]	chr7	318333	314	INTRON	INTRON	ENSG00000280828	ENSG00000280828.1	ENST00000479267.2	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	3	35	2	2.0776	2.143545	2.20949	0.0672585	0.0292951	0.183051	0.141862
chr9	92270584	92270684	4287104	0	-	0.46	(0.44,0.476]	chr9	394210	2	SS5_PROX	SS5_PROX:INTRON	IARS1	ENSG00000196305.19	ENST00000375643.7:ENST00000443024.7:ENST00000447699.7:ENST00000683537.1:ENST00000684726.1:ENST00000683192.1:ENST00000683565.1:ENST00000682756.1:ENST00000684542.1:ENST00000683793.1:ENST00000683817.1:ENST00000682141.1:ENST00000682893.1:ENST00000684557.1:ENST00000498025.2:ENST00000682156.1:ENST00000627121.3:ENST00000683469.1:ENST00000683495.1:ENST00000682578.1:ENST00000682533.1:ENST00000472894.2:ENST00000684757.1:ENST00000684445.1:ENST00000683376.1:ENST00000683679.1:ENST00000683119.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	35	2	2.0776	2.143545	2.20949	0.0672585	0.0292951	0.183051	0.141862
chr3	50023610	50023710	1423796	0	+	0.36	(0.35,0.378]	chr3	149994	237	INTRON	INTRON	RBM6	ENSG00000004534.15	ENST00000442092.5:ENST00000443081.5:ENST00000419610.5:ENST00000441115.5:ENST00000422955.5:ENST00000454079.5:ENST00000266022.9:ENST00000425608.5:ENST00000434592.5:ENST00000464013.5:ENST00000483350.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	78	2	1.87586	2.14337	2.41088	0.0268864	0.0047981	0.135275	0.0602209
chr1	32193482	32193564	64303	0	+	0.390244	(0.378,0.408]	chr1	8196	2	SS5_PROX	SS5_PROX:INTRON	TXLNA	ENSG00000084652.16	ENST00000373610.8:ENST00000373609.1	protein_coding	protein_coding	protein_coding	protein_coding	6	72	2	2.04622	2.14335	2.24048	0.0149927	0.00867536	0.107704	0.0787771
chr1	37975193	37975292	426378	0	-	0.565657	(0.515,0.57]	chr1	51690	51	INTRON	INTRON	SF3A3	ENSG00000183431.12	ENST00000373019.5:ENST00000460925.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	36	2	1.67758	2.143285	2.60899	0.0471728	0.0232669	0.168737	0.118148
chr6	37869689	37869789	2857532	0	+	0.52	(0.515,0.57]	chr6	270225	493	INTRON	INTRON	ZFAND3	ENSG00000156639.12	ENST00000287218.9:ENST00000373391.6:ENST00000474522.5	protein_coding	protein_coding	protein_coding	protein_coding	4	36	2	1.67758	2.143285	2.60899	0.0471728	0.0232669	0.168737	0.118148
chr16	21504379	21504476	6461400	0	-	0.443299	(0.44,0.476]	chr16	623379	17	INTRON	INTRON	SMG1P3	ENSG00000180747.15	ENST00000522841.6:ENST00000437413.2:ENST00000435197.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	16	168	2	2.07354	2.1432849999999997	2.21303	0.0018823	8.42148e-4	0.0391433	0.0263691
chr18	9917118	9917218	6873372	0	+	0.29	(0.28,0.32]	chr18	680866	9	INTRON	INTRON	VAPA	ENSG00000101558.14	ENST00000400000.7:ENST00000577901.5:ENST00000340541.4:ENST00000585042.5:ENST00000578314.1:ENST00000584796.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	53	2	1.71442	2.143185	2.57195	0.0454351	0.0331711	0.164236	0.133994
chr1	96725290	96725390	167976	0	+	0.48	(0.476,0.515]	chr1	18215	13	INTRON	INTRON	PTBP2	ENSG00000117569.19	ENST00000482253.5:ENST00000675735.1:ENST00000609116.5:ENST00000674951.1:ENST00000675080.1:ENST00000426398.3:ENST00000460706.5:ENST00000370197.5:ENST00000370198.5:ENST00000476419.5:ENST00000676292.1:ENST00000676096.1:ENST00000675365.1:ENST00000674579.1:ENST00000675401.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	49	2	1.40757	2.14318	2.87879	0.0707852	0.00999149	0.184528	0.0879541
chr17	22092806	22092906	6578591	0	+	0.58	(0.57,1]	chr17	639556	15	INTRON	INTRON	UBBP4	ENSG00000263563.7	ENST00000648259.1:ENST00000688301.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	11	56	2	1.47472	2.14314	2.81156	0.0206205	3.95149e-4	0.122348	0.0185763
chr6	159750310	159750410	3022625	0	+	0.25	[0,0.28]	chr6	281924	3	SS5_PROX	SS5_PROX:INTRON	WTAP	ENSG00000146457.16	ENST00000358372.8:ENST00000650096.1:ENST00000621533.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	50	2	1.8986	2.143085	2.38757	0.0552962	0.0531512	0.179787	0.165463
chr3	49785500	49785569	1694875	0	-	0.289855	(0.28,0.32]	chr3	173821	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	IP6K1	ENSG00000176095.12	ENST00000321599.9:ENST00000395238.5:ENST00000613416.4:ENST00000468463.5:ENST00000460540.1:ENST00000498149.1:ENST00000495152.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	83	2	1.57779	2.14305	2.70831	0.0502605	0.00378444	0.156383	0.0562562
chr11	68553448	68553546	4818273	0	+	0.510204	(0.476,0.515]	chr11	448965	19	INTRON	INTRON	PPP6R3	ENSG00000110075.15	ENST00000529907.5:ENST00000534534.5:ENST00000524845.5:ENST00000393800.7:ENST00000265637.8:ENST00000524904.5:ENST00000393801.7:ENST00000265636.9:ENST00000529710.5:ENST00000527403.6	protein_coding	protein_coding	protein_coding	protein_coding	10	108	2	2.09066	2.1430350000000002	2.19541	0.00772252	0.00155426	0.0756858	0.0364504
chr3	47680031	47680126	1684041	0	-	0.410526	(0.408,0.44]	chr3	172035	2	SS5_PROX	SS5_PROX:INTRON	SMARCC1	ENSG00000173473.11	ENST00000254480.10:ENST00000425518.5:ENST00000462198.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	90	2	2.1269	2.14292	2.15894	0.00691204	0.00504142	0.0718189	0.0646039
chr17	80292087	80292167	6683379	0	+	0.5	(0.476,0.515]	chr17	652992	2	SS5_PROX	SS5_PROX:INTRON	RNF213	ENSG00000173821.20	ENST00000582970.6:ENST00000508628.6:ENST00000319921.4:ENST00000559070.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	56	2	2.06898	2.142875	2.21677	0.0207026	0.0137491	0.110999	0.10247
chr1	8354488	8354587	369110	0	-	0.313131	(0.28,0.32]	chr1	43383	22	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000377464.5:ENST00000467350.1:ENST00000400907.6:ENST00000476556.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	84	2	1.7305	2.142855	2.55521	0.0327022	0.0067419	0.133816	0.0739405
chr4	78836785	78836885	1981993	0	+	0.3	(0.28,0.32]	chr4	198479	27	INTRON	INTRON	BMP2K	ENSG00000138756.19	ENST00000389010.7:ENST00000502613.3:ENST00000502871.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	113	2	1.33399	2.142855	2.95172	0.0743182	3.7205e-4	0.191786	0.0173669
chr15	42503122	42503222	6009675	0	+	0.3	(0.28,0.32]	chr15	572143	68	INTRON	INTRON	SNAP23	ENSG00000092531.10	ENST00000568745.5:ENST00000561526.5:ENST00000568227.5:ENST00000568451.5:ENST00000563765.5:ENST00000349777.5:ENST00000249647.8:ENST00000564153.5:ENST00000566141.5:ENST00000567094.5:ENST00000566327.5:ENST00000568331.5:ENST00000563451.1:ENST00000626061.2:ENST00000627440.2:ENST00000566035.5:ENST00000568859.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	44	2	2.0243	2.1426	2.2609	0.0671429	0.0364967	0.183051	0.153759
chr2	174377822	174377922	1271166	0	-	0.31	(0.28,0.32]	chr2	134338	189	INTRON	INTRON	CIR1	ENSG00000138433.16	ENST00000342016.8:ENST00000377973.4	protein_coding	protein_coding	protein_coding	protein_coding	3	44	2	2.0243	2.1426	2.2609	0.0671429	0.0364967	0.183051	0.153759
chr22	19103862	19103962	7551829	0	-	0.31	(0.28,0.32]	chr22	771903	140	INTRON	INTRON	DGCR2	ENSG00000070413.20	ENST00000537045.5:ENST00000545799.5:ENST00000263196.12:ENST00000389262.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	44	2	2.0243	2.1426	2.2609	0.0671429	0.0364967	0.183051	0.153759
chr3	9808338	9808438	1361085	0	+	0.47	(0.44,0.476]	chr3	143131	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ARPC4-TTLL3:TTLL3	ENSG00000250151.9:ENSG00000214021.17	ENST00000424442.5:ENST00000418163.5:ENST00000397256.5:ENST00000453882.1:ENST00000414814.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	94	2	1.86755	2.14256	2.41757	0.00715715	0.00417342	0.0756118	0.057064
chr1	174172350	174172450	257232	0	+	0.39	(0.378,0.408]	chr1	30720	123	INTRON	INTRON	RABGAP1L	ENSG00000152061.24	ENST00000357444.10:ENST00000251507.8:ENST00000681986.1:ENST00000635248.1:ENST00000457696.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	36	2	1.89621	2.14247	2.38873	0.0488044	0.0458857	0.173377	0.149888
chr1	193225920	193226020	285665	0	+	0.39	(0.378,0.408]	chr1	32840	131	INTRON	INTRON	CDC73	ENSG00000134371.14	ENST00000649895.1:ENST00000643006.1:ENST00000367435.5:ENST00000650197.1:ENST00000648071.1:ENST00000635846.1:ENST00000649613.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	36	2	1.89621	2.14247	2.38873	0.0488044	0.0458857	0.173377	0.149888
chr16	74949136	74949217	6526926	0	-	0.407407	(0.378,0.408]	chr16	632122	2	INTRON	INTRON	WDR59	ENSG00000103091.15	ENST00000262144.11:ENST00000616369.4:ENST00000536050.5:ENST00000568462.5:ENST00000568323.5:ENST00000563111.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	36	2	1.89621	2.14247	2.38873	0.0488044	0.0458857	0.173377	0.149888
chr7	23331803	23331903	3502261	0	-	0.4	(0.378,0.408]	chr7	326829	122	INTRON	INTRON	IGF2BP3	ENSG00000136231.14	ENST00000258729.8:ENST00000619562.4:ENST00000421467.6:ENST00000467592.5:ENST00000497563.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	36	2	1.89621	2.14247	2.38873	0.0488044	0.0458857	0.173377	0.149888
chr7	129009919	129010018	3636128	0	-	0.40404	(0.378,0.408]	chr7	338122	44	INTRON	INTRON	TNPO3	ENSG00000064419.14	ENST00000627585.2:ENST00000265388.10:ENST00000471234.5:ENST00000482320.5:ENST00000471166.1	protein_coding	protein_coding	protein_coding	protein_coding	3	36	2	1.89621	2.14247	2.38873	0.0488044	0.0458857	0.173377	0.149888
chr7	129835757	129835855	3636785	0	-	0.397959	(0.378,0.408]	chr7	338176	3	INTRON	INTRON	UBE2H	ENSG00000186591.13	ENST00000355621.8:ENST00000649897.1:ENST00000473814.6:ENST00000496698.5:ENST00000483368.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	36	2	1.89621	2.14247	2.38873	0.0488044	0.0458857	0.173377	0.149888
chr7	140729776	140729875	3661745	0	-	0.393939	(0.378,0.408]	chr7	339961	29	INTRON	INTRON	BRAF	ENSG00000157764.14	ENST00000496384.7:ENST00000644969.2:ENST00000644120.1:ENST00000642875.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	36	2	1.89621	2.14247	2.38873	0.0488044	0.0458857	0.173377	0.149888
chr1	77968848	77968921	494427	0	-	0.328767	(0.32,0.35]	chr1	58556	3	SS5_PROX	SS5_PROX:INTRON	FUBP1	ENSG00000162613.17	ENST00000370768.7:ENST00000294623.8:ENST00000370767.5:ENST00000421641.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	75	2	1.38748	2.142455	2.89743	0.0373731	0.0127608	0.155878	0.0926667
chr14	30995269	30995369	5857562	0	-	0.32	(0.28,0.32]	chr14	556508	309	INTRON	INTRON	STRN3	ENSG00000196792.12	ENST00000355683.9:ENST00000357479.10:ENST00000555358.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	68	2	1.45717	2.14243	2.82769	0.0472947	0.0169391	0.16913	0.103888
chr17	82466792	82466890	6692346	0	+	0.367347	(0.35,0.378]	chr17	654561	20	INTRON	INTRON	NARF	ENSG00000141562.19	ENST00000579198.5:ENST00000390006.8:ENST00000583181.5:ENST00000584192.5:ENST00000580296.5:ENST00000345415.11:ENST00000581202.5:ENST00000374611.9:ENST00000457415.7:ENST00000581795.5:ENST00000584411.5:ENST00000577812.5:ENST00000581743.5:ENST00000577432.5:ENST00000582907.5:ENST00000309794.16:ENST00000578082.5:ENST00000580748.1:ENST00000577410.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	33	378	2	2.12105	2.1424	2.16375	6.16042e-4	1.78958e-4	0.0229036	0.0116696
chr3	198209573	198209671	1600260	0	+	0.530612	(0.515,0.57]	chr3	165904	8	INTRON	INTRON	FAM157A	ENSG00000236438.7	ENST00000634862.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	6	57	2	1.44089	2.14238	2.84387	0.0617046	0.0018149	0.193423	0.0384415
chr14	30983184	30983284	5857441	0	-	0.41	(0.408,0.44]	chr14	556508	188	INTRON	INTRON	STRN3	ENSG00000196792.12	ENST00000355683.9:ENST00000357479.10:ENST00000555358.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	35	2	2.00768	2.1423300000000003	2.27698	0.0583528	0.035843	0.167723	0.152216
chr2	241250075	241250171	1347887	0	-	0.427083	(0.408,0.44]	chr2	141565	2	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HDLBP	ENSG00000115677.18	ENST00000391975.5:ENST00000427183.6:ENST00000310931.10:ENST00000391976.6:ENST00000373292.8:ENST00000487169.5:ENST00000498595.5:ENST00000476807.5:ENST00000477477.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	35	2	2.00768	2.1423300000000003	2.27698	0.0583528	0.035843	0.167723	0.152216
chr21	5563326	5563426	7364229	0	+	0.43	(0.408,0.44]	chr21	751617	91	INTRON	INTRON	ENSG00000274333	ENSG00000274333.4	ENST00000619252.4:ENST00000623449.3:ENST00000624627.3:ENST00000623436.3:ENST00000624368.3:ENST00000623914.3:ENST00000624516.1:ENST00000624412.3:ENST00000622939.3	lncRNA	lncRNA	lncRNA	lncRNA	3	35	2	2.00768	2.1423300000000003	2.27698	0.0583528	0.035843	0.167723	0.152216
chr8	123393297	123393396	4042612	0	-	0.494949	(0.476,0.515]	chr8	368789	123	INTRON	INTRON	ATAD2	ENSG00000156802.13	ENST00000287394.10:ENST00000517666.5:ENST00000521903.5:ENST00000519124.5:ENST00000521496.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	51	2	1.63187	2.142275	2.65268	0.037661	0.0201975	0.14058	0.121243
chr12	93721161	93721261	5190337	0	+	0.39	(0.378,0.408]	chr12	490910	417	INTRON	INTRON	CRADD	ENSG00000169372.13	ENST00000332896.8:ENST00000549615.5:ENST00000552983.5:ENST00000552033.5:ENST00000551065.5:ENST00000548483.5:ENST00000542893.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	37	2	1.8252	2.14226	2.45932	0.0619563	0.0346754	0.174514	0.148144
chr16	23880994	23881093	6324210	0	+	0.40404	(0.378,0.408]	chr16	605697	118	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000645517.1:ENST00000498739.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	88	2	1.35931	2.1422	2.92509	0.0393907	0.00167715	0.161534	0.0370386
chr4	70936825	70936925	1970850	0	+	0.29	(0.28,0.32]	chr4	197571	339	INTRON	INTRON	MOB1B	ENSG00000173542.9	ENST00000502869.5:ENST00000509041.5:ENST00000309395.7:ENST00000396051.2:ENST00000511449.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	73	2	1.96376	2.14214	2.32052	0.0480066	0.00612675	0.153019	0.0708525
chr8	11818649	11818749	3702688	0	+	0.38	(0.378,0.408]	chr8	343503	84	INTRON	INTRON	FDFT1	ENSG00000079459.13	ENST00000538689.4:ENST00000615631.4:ENST00000618539.4:ENST00000530337.5:ENST00000623368.3:ENST00000446331.6:ENST00000443614.6:ENST00000220584.9:ENST00000525607.5:ENST00000525283.5:ENST00000529464.5:ENST00000525900.5:ENST00000528812.5:ENST00000622850.2:ENST00000530664.5:ENST00000525954.5:ENST00000531249.2:ENST00000532266.5:ENST00000528643.5:ENST00000525777.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	85	2	2.02416	2.142125	2.26009	0.0188651	0.00361901	0.108861	0.0554656
chr1	30984730	30984829	412079	0	-	0.353535	(0.35,0.378]	chr1	49701	27	INTRON	INTRON	PUM1	ENSG00000134644.16	ENST00000426105.7:ENST00000373747.7:ENST00000257075.9:ENST00000424085.6:ENST00000525843.5:ENST00000440538.6:ENST00000498419.5:ENST00000373741.8:ENST00000373742.6:ENST00000532678.1:ENST00000526215.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	62	2	2.04224	2.1421	2.24196	0.0363073	0.00744693	0.138959	0.0772645
chr16	58593673	58593772	6496018	0	-	0.373737	(0.35,0.378]	chr16	628630	44	INTRON	INTRON	CNOT1	ENSG00000125107.19	ENST00000317147.10:ENST00000569240.5:ENST00000567188.5:ENST00000441024.6:ENST00000565605.5:ENST00000564557.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	62	2	2.04224	2.1421	2.24196	0.0363073	0.00744693	0.138959	0.0772645
chr2	68242400	68242499	1146423	0	-	0.363636	(0.35,0.378]	chr2	122396	249	INTRON	INTRON	PPP3R1	ENSG00000221823.11	ENST00000234310.8:ENST00000409752.5:ENST00000409377.1	protein_coding	protein_coding	protein_coding	protein_coding	5	62	2	2.04224	2.1421	2.24196	0.0363073	0.00744693	0.138959	0.0772645
chr20	31741464	31741560	7253681	0	+	0.46875	(0.44,0.476]	chr20	736725	15	INTRON	INTRON	TPX2	ENSG00000088325.16	ENST00000340513.4:ENST00000300403.11	protein_coding	protein_coding	protein_coding	protein_coding	4	47	2	1.83899	2.1420649999999997	2.44514	0.0589734	0.0087381	0.167915	0.0845538
chr5	53886913	53887013	2616669	0	-	0.45	(0.44,0.476]	chr5	248827	2	SS3_PROX	SS3_PROX:INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	47	2	1.83899	2.1420649999999997	2.44514	0.0589734	0.0087381	0.167915	0.0845538
chr17	44925589	44925687	6781567	0	-	0.479592	(0.476,0.515]	chr17	668898	10	UTR3	UTR3:EXON_MRNA	KIF18B	ENSG00000186185.14	ENST00000587309.5:ENST00000593135.6	protein_coding	protein_coding	protein_coding	protein_coding	18	183	2	1.65506	2.14202	2.62898	0.00532145	2.14909e-4	0.0660606	0.0134244
chr7	75412688	75412788	3338214	0	+	0.37	(0.35,0.378]	chr7	310813	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	NSUN5P1	ENSG00000223705.10	ENST00000691741.1:ENST00000687920.1:ENST00000393633.6:ENST00000687621.1:ENST00000689022.1:ENST00000691865.1:ENST00000688076.1:ENST00000693166.1:ENST00000457988.5:ENST00000689132.1:ENST00000691132.1:ENST00000692954.1:ENST00000455158.5:ENST00000421140.6:ENST00000693244.1:ENST00000422386.5:ENST00000464979.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	12	142	2	1.97767	2.14201	2.30635	0.00335504	0.00221287	0.0531599	0.0419207
chr11	47169660	47169757	4948833	0	-	0.505155	(0.476,0.515]	chr11	463893	2	INTRON	INTRON	ARFGAP2	ENSG00000149182.15	ENST00000426335.6:ENST00000627920.2:ENST00000524782.6:ENST00000395449.7:ENST00000533243.5:ENST00000527776.5:ENST00000526342.5:ENST00000527927.5:ENST00000532478.5:ENST00000532438.5:ENST00000529455.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	64	2	1.82798	2.1419799999999998	2.45598	0.0184548	0.00945755	0.116598	0.0817766
chr3	33682478	33682578	1653646	0	-	0.26	[0,0.28]	chr3	169658	186	INTRON	INTRON	CLASP2	ENSG00000163539.18	ENST00000399362.8:ENST00000682230.1:ENST00000468888.6:ENST00000359576.9	protein_coding	protein_coding	protein_coding	protein_coding	3	50	2	1.84147	2.1419449999999998	2.44242	0.0610416	0.0491024	0.193277	0.155269
chr21	34097849	34097948	7401337	0	+	0.373737	(0.35,0.378]	chr21	753974	6	UTR3	UTR3:EXON_MRNA:INTRON	MRPS6:SLC5A3	ENSG00000243927.6:ENSG00000198743.7	ENST00000488492.5:ENST00000477091.5:ENST00000399312.3:ENST00000381151.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	81	2	2.09348	2.14191	2.19034	0.023941	0.00418185	0.119443	0.0591344
chr19	6745828	6745928	7006734	0	+	0.38	(0.378,0.408]	chr19	695257	4	SS3_PROX	SS3_PROX:INTRON	TRIP10	ENSG00000125733.18	ENST00000600428.5:ENST00000313244.14:ENST00000313285.12:ENST00000600677.5:ENST00000595305.5:ENST00000596758.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	68	2	2.12071	2.14187	2.16303	0.0252473	0.00601933	0.12011	0.0700813
chr11	2957706	2957802	4891637	0	-	0.28125	(0.28,0.32]	chr11	458297	16	INTRON	INTRON	NAP1L4	ENSG00000205531.13	ENST00000620138.4:ENST00000380542.9:ENST00000526115.5:ENST00000492685.5:ENST00000528363.5:ENST00000483643.7:ENST00000528261.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	61	2	2.0243	2.141845	2.25939	0.0364967	0.021772	0.153759	0.11491
chr1	246132990	246133089	676962	0	-	0.383838	(0.378,0.408]	chr1	79721	367	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000391836.3:ENST00000453676.5:ENST00000462422.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	75	2	1.33751	2.14182	2.94613	0.0677318	0.00112461	0.18426	0.0308177
chr21	43881743	43881843	7413955	0	+	0.48	(0.476,0.515]	chr21	755688	140	INTRON	INTRON	AGPAT3	ENSG00000160216.21	ENST00000291572.13:ENST00000448287.5	protein_coding	protein_coding	protein_coding	protein_coding	6	69	2	1.96833	2.14181	2.31529	0.0195007	0.00614783	0.119967	0.0676501
chr2	108741969	108742068	847642	0	+	0.474747	(0.44,0.476]	chr2	94821	9	INTRON	INTRON	RANBP2	ENSG00000153201.16	ENST00000283195.11	protein_coding	protein_coding	protein_coding	protein_coding	7	73	2	1.99228	2.14177	2.29126	0.0165638	0.00615695	0.102621	0.0711648
chr9	111364159	111364258	4314039	0	-	0.464646	(0.44,0.476]	chr9	396591	1	INTRON	INTRON	ECPAS	ENSG00000136813.15	ENST00000684092.1:ENST00000338205.9:ENST00000259335.8:ENST00000374383.1	protein_coding	protein_coding	protein_coding	protein_coding	4	47	2	2.13779	2.1417599999999997	2.14573	0.0264596	0.0238593	0.129075	0.122506
chr19	11899875	11899974	7019600	0	+	0.383838	(0.378,0.408]	chr19	697857	115	INTRON	INTRON	ZNF69	ENSG00000198429.10	ENST00000429654.7:ENST00000445911.5:ENST00000340180.5	protein_coding	protein_coding	protein_coding	protein_coding	5	63	2	2.04292	2.1417	2.24048	0.0326035	0.00867536	0.145164	0.0787771
chr2	55012532	55012631	1121026	0	-	0.30303	(0.28,0.32]	chr2	120147	22	INTRON	INTRON	RTN4	ENSG00000115310.19	ENST00000404909.5:ENST00000394611.6:ENST00000317610.11:ENST00000357732.8:ENST00000337526.11:ENST00000357376.7:ENST00000405240.5:ENST00000438462.1	protein_coding	protein_coding	protein_coding	protein_coding	7	74	2	1.27925	2.1416	3.00395	0.0642509	0.0101329	0.19963	0.0850389
chr16	85574045	85574145	6415572	0	+	0.68	(0.57,1]	chr16	615470	173	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	11	64	2	1.9324	2.14159	2.35078	0.00747247	4.76857e-4	0.0772645	0.0202392
chr21	44871073	44871171	7469102	0	-	0.367347	(0.35,0.378]	chr21	761251	51	INTRON	INTRON	PTTG1IP	ENSG00000183255.12	ENST00000397887.7:ENST00000445724.3:ENST00000330938.8:ENST00000494690.5:ENST00000480234.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	156	2	1.85621	2.14156	2.42691	0.00990167	3.23801e-4	0.0838372	0.0159645
chr1	23149872	23149972	398828	0	-	0.53	(0.515,0.57]	chr1	47812	163	INTRON	INTRON	LUZP1	ENSG00000169641.14	ENST00000302291.8:ENST00000314174.5:ENST00000471849.5	protein_coding	protein_coding	protein_coding	protein_coding	6	55	2	1.84511	2.14147	2.43783	0.0167182	0.00916404	0.110511	0.0812949
chr10	69394352	69394449	4446652	0	+	0.340206	(0.32,0.35]	chr10	410309	17	INTRON	INTRON	HK1	ENSG00000156515.24	ENST00000436817.6:ENST00000360289.6:ENST00000448642.6:ENST00000643399.2:ENST00000298649.8:ENST00000359426.7:ENST00000493591.6:ENST00000470050.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	84	2	1.65179	2.14147	2.63115	0.0245569	0.00608073	0.131869	0.0676501
chr21	37202194	37202283	7406184	0	+	0.269663	[0,0.28]	chr21	754831	8	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	TTC3	ENSG00000182670.14	ENST00000492275.6:ENST00000418766.6:ENST00000450533.6:ENST00000696812.1:ENST00000696811.1:ENST00000463216.6:ENST00000411496.2:ENST00000399017.6:ENST00000354749.6:ENST00000479930.5:ENST00000476784.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	100	2	2.05547	2.14145	2.22743	0.0218514	0.0097118	0.11491	0.0875962
chr1	29016364	29016461	59981	0	+	0.546392	(0.515,0.57]	chr1	7661	2	INTRON	INTRON	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000647918.1:ENST00000646800.1:ENST00000644342.1:ENST00000646189.1:ENST00000482464.6:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000646260.1:ENST00000373798.5:ENST00000644600.1:ENST00000649674.1:ENST00000643173.1:ENST00000343067.9:ENST00000644780.1:ENST00000650265.1:ENST00000648181.1:ENST00000643604.1:ENST00000648891.1:ENST00000373797.2:ENST00000349460.9:ENST00000645184.1:ENST00000645111.1:ENST00000643302.1:ENST00000645999.1:ENST00000642643.1:ENST00000636666.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	15	125	2	1.84386	2.141435	2.43901	0.00206522	0.00146205	0.04217	0.0346249
chr7	119779888	119779988	3629138	0	-	0.25	[0,0.28]	chr7	337323	274	INTRON	INTRON	LINC02476	ENSG00000225546.6	ENST00000660268.1:ENST00000431071.5:ENST00000426413.2	lncRNA	lncRNA	lncRNA	lncRNA	11	174	2	2.09204	2.14135	2.19066	0.0120948	0.00186697	0.0908218	0.0399876
chr2	47406100	47406200	773555	0	+	0.5	(0.476,0.515]	chr2	87237	23	INTRON	INTRON	MSH2	ENSG00000095002.15	ENST00000543555.6:ENST00000644092.1:ENST00000645339.1:ENST00000646415.1:ENST00000645506.1:ENST00000406134.5:ENST00000233146.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	102	2	2.03337	2.141285	2.2492	0.00851546	0.00238578	0.0833995	0.0439909
chr21	43099671	43099768	7468260	0	-	0.360825	(0.35,0.378]	chr21	761110	22	EXON_MRNA	EXON_MRNA:INTRON	U2AF1	ENSG00000160201.12	ENST00000291552.9:ENST00000380276.6:ENST00000464750.5:ENST00000475639.5:ENST00000459639.5:ENST00000486519.5:ENST00000463599.5:ENST00000496462.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	14	139	2	1.30303	2.14126	2.97949	0.0285003	4.02507e-4	0.1388	0.0185763
chr2	134939462	134939562	872447	0	+	0.5	(0.476,0.515]	chr2	97675	4	SS5_PROX	SS5_PROX:INTRON	CCNT2	ENSG00000082258.13	ENST00000419781.5:ENST00000446247.5:ENST00000264157.10:ENST00000452839.5:ENST00000295238.10:ENST00000475094.1:ENST00000417175.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	86	2	1.80755	2.141255	2.47496	0.0131326	0.00323541	0.0999551	0.0507251
chr10	68069138	68069235	4637886	0	-	0.247423	[0,0.28]	chr10	426440	16	UTR3	UTR3:EXON_MRNA:INTRON	HERC4	ENSG00000148634.16	ENST00000373700.9:ENST00000412272.6:ENST00000395198.7:ENST00000473533.6:ENST00000427635.6:ENST00000513996.5:ENST00000395185.7:ENST00000505760.5:ENST00000492996.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	72	2	1.83992	2.14117	2.44242	0.0491024	0.0212029	0.155269	0.123192
chr12	91381633	91381733	5383028	0	-	0.42	(0.408,0.44]	chr12	513463	113	INTRON	INTRON	ENSG00000289605	ENSG00000289605.1	ENST00000685093.1	lncRNA	lncRNA	lncRNA	lncRNA	7	72	2	1.70933	2.14114	2.57295	0.0189186	0.00640423	0.118303	0.0694534
chr4	82372173	82372262	2177521	0	-	0.426966	(0.408,0.44]	chr4	214152	2	INTRON	INTRON	HNRNPD	ENSG00000138668.19	ENST00000313899.12:ENST00000353341.8:ENST00000352301.8:ENST00000513584.1:ENST00000509263.5:ENST00000507010.5:ENST00000515432.1:ENST00000503822.1:ENST00000509107.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	72	2	1.70933	2.14114	2.57295	0.0189186	0.00640423	0.118303	0.0694534
chr15	84548872	84548972	6251153	0	-	0.37	(0.35,0.378]	chr15	596581	22	INTRON	INTRON	UBE2Q2P1	ENSG00000189136.9	ENST00000354771.8:ENST00000339094.5:ENST00000561403.6:ENST00000558251.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	7	79	2	1.91549	2.14113	2.36677	0.0139343	0.00887698	0.0957526	0.0849778
chr21	37082279	37082376	7404911	0	+	0.371134	(0.35,0.378]	chr21	754522	8	UTR5	UTR5:EXON_MRNA:INTRON	TTC3	ENSG00000182670.14	ENST00000492275.6:ENST00000418766.6:ENST00000485402.5:ENST00000450533.6:ENST00000438055.5:ENST00000696812.1:ENST00000696811.1:ENST00000463216.6:ENST00000481605.6:ENST00000540756.5:ENST00000494243.5:ENST00000399010.5:ENST00000411496.2:ENST00000399017.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	15	145	2	1.50405	2.14107	2.77809	0.0113075	0.00103021	0.0947664	0.029231300000000002
chr1	84501648	84501746	495974	0	-	0.428571	(0.408,0.44]	chr1	58754	35	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	GNG5	ENSG00000174021.12	ENST00000689285.1:ENST00000370645.9:ENST00000487806.5:ENST00000370641.3:ENST00000686161.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	42	2	1.69566	2.14095	2.58624	0.0453922	0.0273686	0.164236	0.123904
chr19	8455774	8455874	7010872	0	+	0.43	(0.408,0.44]	chr19	696142	2	SS5_PROX	SS5_PROX:INTRON	HNRNPM	ENSG00000099783.12	ENST00000348943.7:ENST00000597813.5:ENST00000600092.5:ENST00000325495.9:ENST00000600806.5:ENST00000620401.4:ENST00000594907.5:ENST00000596984.5:ENST00000601645.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	42	2	1.69566	2.14095	2.58624	0.0453922	0.0273686	0.164236	0.123904
chr21	34105369	34105468	7401413	0	+	0.313131	(0.28,0.32]	chr21	753974	82	UTR3	UTR3:EXON_MRNA:INTRON	MRPS6:SLC5A3	ENSG00000243927.6:ENSG00000198743.7	ENST00000488492.5:ENST00000477091.5:ENST00000399312.3:ENST00000381151.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	112	2	2.06157	2.14094	2.22031	0.0189458	0.0027867	0.108861	0.0488769
chr6	36456060	36456160	2854048	0	+	0.41	(0.408,0.44]	chr6	269712	30	INTRON	INTRON	KCTD20	ENSG00000112078.14	ENST00000536244.5:ENST00000373731.7:ENST00000483557.5:ENST00000474988.5:ENST00000498267.5:ENST00000481911.5:ENST00000449081.6:ENST00000265344.8:ENST00000460983.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	57	2	1.83501	2.1408750000000003	2.44674	0.0323448	0.00868283	0.133003	0.0842798
chr7	119898498	119898598	3630326	0	-	0.28	[0,0.28]	chr7	337335	973	INTRON	INTRON	LINC02476	ENSG00000225546.6	ENST00000660268.1:ENST00000431071.5:ENST00000426413.2	lncRNA	lncRNA	lncRNA	lncRNA	6	95	2	2.0412	2.140865	2.24053	0.0256186	0.0106194	0.120376	0.0914726
chr21	39220247	39220346	7464579	0	-	0.484848	(0.476,0.515]	chr21	760426	12	INTRON	INTRON	BRWD1	ENSG00000185658.14	ENST00000333229.6:ENST00000342449.8:ENST00000446924.5:ENST00000380800.7:ENST00000424441.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	47	2	2.06491	2.14084	2.21677	0.0304733	0.0207026	0.143385	0.110999
chr7	135663591	135663691	3429290	0	+	0.5	(0.476,0.515]	chr7	319866	6	INTRON	INTRON	STMP1	ENSG00000243317.8	ENST00000509448.5:ENST00000507606.3:ENST00000515197.2:ENST00000422968.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	47	2	2.06491	2.14084	2.21677	0.0304733	0.0207026	0.143385	0.110999
chr9	128230699	128230797	4203336	0	+	0.479592	(0.476,0.515]	chr9	384064	42	INTRON	INTRON	DNM1	ENSG00000106976.21	ENST00000372923.8:ENST00000341179.11:ENST00000475805.5:ENST00000393594.7:ENST00000628346.2:ENST00000486160.3:ENST00000627543.2:ENST00000627061.2:ENST00000634267.2:ENST00000637999.1:ENST00000441149.6:ENST00000482638.6:ENST00000637317.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	47	2	2.06491	2.14084	2.21677	0.0304733	0.0207026	0.143385	0.110999
chrX	101158633	101158733	7694759	0	+	0.49	(0.476,0.515]	chrX	787429	101	INTRON	INTRON	CENPI	ENSG00000102384.14	ENST00000684367.1:ENST00000423383.3:ENST00000682095.1:ENST00000372927.5	protein_coding	protein_coding	protein_coding	protein_coding	4	47	2	2.06491	2.14084	2.21677	0.0304733	0.0207026	0.143385	0.110999
chr7	92608491	92608590	3570969	0	-	0.242424	[0,0.28]	chr7	332772	37	UTR3	UTR3:EXON_MRNA	CDK6	ENSG00000105810.10	ENST00000424848.3:ENST00000265734.8	protein_coding	protein_coding	protein_coding	protein_coding	6	104	2	1.91898	2.14077	2.36256	0.0266433	0.00833733	0.134413	0.0774402
chr9	37154040	37154140	4117994	0	+	0.49	(0.476,0.515]	chr9	375382	62	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000322831.6:ENST00000461038.5:ENST00000488607.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	77	2	2.10798	2.1407249999999998	2.17347	0.010447	0.00628634	0.0855102	0.0722266
chr20	38427600	38427679	7342231	0	-	0.455696	(0.44,0.476]	chr20	748313	3	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	SNHG17	ENSG00000196756.14	ENST00000654008.2:ENST00000658076.1:ENST00000662982.2:ENST00000456953.7:ENST00000654183.2:ENST00000663540.2:ENST00000651115.2:ENST00000660885.2:ENST00000662213.1:ENST00000665233.2:ENST00000666268.2:ENST00000665735.1:ENST00000660558.2:ENST00000691280.1:ENST00000658488.2:ENST00000688336.1:ENST00000668054.2:ENST00000690441.1:ENST00000655520.2:ENST00000687490.1:ENST00000664626.1:ENST00000658051.1:ENST00000668042.1:ENST00000686971.1:ENST00000663187.1:ENST00000669114.1:ENST00000653343.1:ENST00000666225.1:ENST00000657868.1:ENST00000663534.1:ENST00000658141.1:ENST00000689917.1:ENST00000664073.2:ENST00000653697.1:ENST00000656320.1:ENST00000686814.1:ENST00000417578.7:ENST00000654853.1:ENST00000665440.1:ENST00000436764.7:ENST00000668482.2:ENST00000671249.1:ENST00000655692.1:ENST00000662568.1:ENST00000659255.1:ENST00000693250.1:ENST00000691368.1:ENST00000693227.1:ENST00000690361.1:ENST00000670051.1:ENST00000667912.1:ENST00000693665.1:ENST00000665181.1:ENST00000687532.1:ENST00000691386.1:ENST00000693684.1:ENST00000666331.1:ENST00000669480.1:ENST00000658905.1:ENST00000661252.1:ENST00000669137.1:ENST00000688133.1:ENST00000689414.1:ENST00000691314.1:ENST00000669033.1:ENST00000686145.1:ENST00000653938.1:ENST00000663784.1:ENST00000665003.1:ENST00000659400.1:ENST00000653753.1:ENST00000449469.5:ENST00000654389.1:ENST00000657429.1:ENST00000656023.1:ENST00000692262.1:ENST00000414142.5:ENST00000670958.1:ENST00000657216.2:ENST00000664636.1:ENST00000657843.1:ENST00000660189.1:ENST00000660064.1:ENST00000423536.6:ENST00000658455.1:ENST00000666419.1:ENST00000413755.5	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	33	368	2	2.02124	2.14061	2.25998	5.487e-4	1.32793e-4	0.0213049	0.0104937
chr3	40533090	40533189	1402552	0	+	0.414141	(0.408,0.44]	chr3	147394	1	UTR3	UTR3:EXON_MRNA:INTRON	ZNF621	ENSG00000172888.12	ENST00000310898.5:ENST00000403205.6:ENST00000431278.5:ENST00000339296.10:ENST00000490457.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	72	2	1.66945	2.140575	2.6117	0.0218479	0.00555224	0.123836	0.0648867
chr10	28554042	28554142	4414014	0	+	0.53	(0.515,0.57]	chr10	407148	156	INTRON	INTRON	WAC	ENSG00000095787.24	ENST00000680735.1:ENST00000375664.8:ENST00000428935.6:ENST00000651598.1:ENST00000628285.3:ENST00000681112.1:ENST00000679570.1:ENST00000375646.5:ENST00000354911.9:ENST00000347934.8:ENST00000420266.6:ENST00000651885.1:ENST00000651441.1:ENST00000679398.1:ENST00000424454.5:ENST00000442148.6:ENST00000448193.5:ENST00000414108.6:ENST00000679428.1:ENST00000439676.5:ENST00000345541.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	21	194	2	1.87841	2.140555	2.4027	0.00311729	5.12027e-5	0.0498289	0.00585477
chr2	55034218	55034318	1121247	0	-	0.59	(0.57,1]	chr2	120163	56	INTRON	INTRON	RTN4	ENSG00000115310.19	ENST00000404909.5:ENST00000394611.6:ENST00000317610.11:ENST00000357732.8:ENST00000337526.11:ENST00000357376.7:ENST00000405240.5:ENST00000438462.1:ENST00000427710.5	protein_coding	protein_coding	protein_coding	protein_coding	8	48	2	1.83769	2.14052	2.44335	0.0297587	5.18145e-4	0.12908	0.0204059
chr4	126557111	126557211	2236280	0	-	0.38	(0.378,0.408]	chr4	219023	916	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	3	36	2	1.97143	2.14052	2.30961	0.055088	0.0398704	0.165463	0.161534
chr8	30707604	30707695	3932543	0	-	0.527473	(0.515,0.57]	chr8	360252	1	SS5_PROX	SS5_PROX:INTRON	GSR	ENSG00000104687.14	ENST00000221130.11:ENST00000643653.1:ENST00000643525.1:ENST00000537535.5:ENST00000541648.5:ENST00000546342.5:ENST00000523295.5:ENST00000521479.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	43	2	1.84511	2.1405000000000003	2.43589	0.0370871	0.0167182	0.139194	0.110511
chr9	63978784	63978883	4262604	0	-	0.434343	(0.408,0.44]	chr9	392248	36	INTRON	INTRON	ENSG00000204790	ENSG00000204790.9	ENST00000485382.3	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	7	73	2	1.54151	2.14046	2.73941	0.0368312	0.002744	0.138959	0.0484022
chr2	131508336	131508436	867111	0	+	0.45	(0.44,0.476]	chr2	97372	4	SS3_PROX	SS3_PROX:INTRON	SMPD4BP	ENSG00000152117.18	ENST00000438378.2:ENST00000415574.6	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript:transcribed_processed_pseudogene	5	57	2	1.49942	2.140355	2.78129	0.0792118	0.00229634	0.199574	0.0439319
chr5	154869373	154869471	2527787	0	+	0.397959	(0.378,0.408]	chr5	241753	12	INTRON	INTRON	CNOT8	ENSG00000155508.14	ENST00000523698.5:ENST00000517876.5:ENST00000520472.5:ENST00000519211.5:ENST00000522458.5:ENST00000403027.6:ENST00000521450.5:ENST00000519903.5:ENST00000517568.5:ENST00000524105.5:ENST00000285896.11:ENST00000521583.5:ENST00000520671.5:ENST00000519404.5:ENST00000521729.5:ENST00000518775.5:ENST00000522644.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	36	2	1.81685	2.1402900000000002	2.46373	0.0597868	0.0382831	0.189982	0.141795
chr7	73206434	73206528	3331549	0	+	0.393617	(0.378,0.408]	chr7	309861	4	EXON_LNCRNA	EXON_LNCRNA	GTF2IP4	ENSG00000233369.7	ENST00000544802.5	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	3	36	2	1.81685	2.1402900000000002	2.46373	0.0597868	0.0382831	0.189982	0.141795
chr8	98691881	98691980	3998818	0	-	0.393939	(0.378,0.408]	chr8	366070	403	INTRON	INTRON	STK3	ENSG00000104375.17	ENST00000617590.1:ENST00000419617.7:ENST00000523601.5:ENST00000518165.5:ENST00000521649.5:ENST00000424861.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	36	2	1.81685	2.1402900000000002	2.46373	0.0597868	0.0382831	0.189982	0.141795
chr22	21790297	21790396	7560609	0	-	0.424242	(0.408,0.44]	chr22	773370	11	INTRON	INTRON	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	37	373	2	1.643	2.140285	2.63757	0.00193372	3.48318e-5	0.0408243	0.00499276
chr17	35568801	35568901	6599373	0	+	0.35	(0.32,0.35]	chr17	642201	3	SS5_PROX	SS5_PROX:INTRON	SNHG30	ENSG00000267321.4	ENST00000665667.2:ENST00000687979.1:ENST00000638682.1:ENST00000659685.1:ENST00000592381.1	lncRNA	lncRNA	lncRNA	lncRNA	6	76	2	1.38564	2.1401950000000003	2.89475	0.0793006	0.00160352	0.199711	0.0367961
chr6	169656173	169656272	3266641	0	-	0.373737	(0.35,0.378]	chr6	303167	38	INTRON	INTRON	WDR27	ENSG00000184465.16	ENST00000448612.6:ENST00000648472.1:ENST00000423258.5:ENST00000647790.1:ENST00000546525.5:ENST00000441385.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	95	2	1.74668	2.14019	2.5337	0.0198631	0.0022093	0.109608	0.0435144
chr7	105379949	105380049	3603816	0	-	0.54	(0.515,0.57]	chr7	336161	730	INTRON	INTRON	SRPK2	ENSG00000135250.17	ENST00000393651.8:ENST00000482897.5:ENST00000460391.5:ENST00000462282.5:ENST00000465112.5:ENST00000482862.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	41	2	1.7074	2.14019	2.57298	0.0779432	0.00506495	0.196685	0.0646039
chr1	204532819	204532919	297586	0	+	0.29	(0.28,0.32]	chr1	34287	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	MDM4	ENSG00000198625.14	ENST00000367183.7:ENST00000391947.6:ENST00000454264.6:ENST00000612738.4:ENST00000614459.4:ENST00000616250.4:ENST00000367182.8:ENST00000463049.5:ENST00000470908.5:ENST00000471783.1:ENST00000367180.5:ENST00000507825.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	114	2	1.89468	2.14016	2.38564	0.019774	0.00230684	0.109608	0.0440898
chr13	110902680	110902780	5650522	0	-	0.39	(0.378,0.408]	chr13	538370	16	INTRON	INTRON	ANKRD10	ENSG00000088448.14	ENST00000267339.6:ENST00000489973.6:ENST00000310847.8:ENST00000465753.1:ENST00000494859.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	16	158	2	1.73208	2.140105	2.54813	0.0037081700000000002	0.00119772	0.0561833	0.0315806
chr5	19129262	19129361	2570358	0	-	0.444444	(0.44,0.476]	chr5	246210	906	INTRON	INTRON	ENSG00000249174	ENSG00000249174.1	ENST00000504827.1	lncRNA	lncRNA	lncRNA	lncRNA	8	89	2	1.83459	2.140105	2.44562	0.0198542	0.00135452	0.109608	0.0339121
chr5	10400483	10400583	2318127	0	+	0.34	(0.32,0.35]	chr5	224669	3	SS3_PROX	SS3_PROX:INTRON	MARCHF6	ENSG00000145495.16	ENST00000274140.10:ENST00000449913.6:ENST00000511802.5:ENST00000503788.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	15	195	2	1.54706	2.14009	2.73312	0.0217698	6.18125e-5	0.11491	0.00652488
chr19	36577624	36577721	7057713	0	+	0.412371	(0.408,0.44]	chr19	704693	6	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	ZNF529-AS1	ENSG00000233527.10	ENST00000475219.6:ENST00000670019.1:ENST00000687100.1:ENST00000448373.6:ENST00000592880.6:ENST00000670806.1:ENST00000494214.2	lncRNA	lncRNA	lncRNA	lncRNA	7	79	2	1.8865	2.139995	2.39349	0.0148842	0.00467273	0.107116	0.0600108
chr3	185594627	185594726	1585355	0	+	0.525253	(0.515,0.57]	chr3	164123	41	INTRON	INTRON	SENP2	ENSG00000163904.13	ENST00000430355.5:ENST00000465201.5:ENST00000453532.5:ENST00000296257.10:ENST00000413407.5:ENST00000439684.5:ENST00000458551.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	49	2	2.01978	2.13995	2.26012	0.0165522	0.0160033	0.109464	0.102621
chr1	16637167	16637267	383752	0	-	0.47	(0.44,0.476]	chr1	45226	16	INTRON	INTRON	CROCCP2	ENSG00000215908.10	ENST00000639456.1:ENST00000412962.4:ENST00000635081.1:ENST00000362058.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	8	79	2	1.33609	2.13991	2.94373	0.0510862	0.00143431	0.176696	0.0340925
chr7	152285899	152285999	3679781	0	-	0.52	(0.515,0.57]	chr7	341618	2	SS5_PROX	SS5_PROX:INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000684262.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	81	2	1.74243	2.1397399999999998	2.53705	0.0123268	0.00186194	0.0913588	0.039946
chr7	130095431	130095529	3413844	0	+	0.387755	(0.378,0.408]	chr7	319104	1	INTRON	INTRON	KLHDC10	ENSG00000128607.14	ENST00000335420.10:ENST00000463413.1:ENST00000468226.1	protein_coding	protein_coding	protein_coding	protein_coding	9	103	2	1.9808	2.13966	2.29852	0.0123757	0.00152853	0.0916369	0.0361457
chr12	76056964	76057061	5369934	0	-	0.484536	(0.476,0.515]	chr12	512288	4	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	NAP1L1	ENSG00000187109.15	ENST00000618691.5:ENST00000552056.5:ENST00000393263.7:ENST00000431879.7:ENST00000552147.5:ENST00000547773.5:ENST00000544816.5:ENST00000542344.5:ENST00000535020.6:ENST00000549596.5:ENST00000547993.5:ENST00000552342.5:ENST00000547529.6:ENST00000548044.5:ENST00000550934.5:ENST00000551992.5:ENST00000548273.5:ENST00000551600.5:ENST00000547704.5:ENST00000551524.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	56	2	1.7425	2.139605	2.53671	0.0417334	0.00624027	0.147007	0.0718843
chr5	146491320	146491420	2515961	0	+	0.51	(0.476,0.515]	chr5	240369	73	INTRON	INTRON	TCERG1	ENSG00000113649.13	ENST00000296702.9:ENST00000679501.2:ENST00000394421.7:ENST00000549332.1:ENST00000515203.5:ENST00000506524.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	56	2	1.7425	2.139605	2.53671	0.0417334	0.00624027	0.147007	0.0718843
chr6	67882380	67882480	3135257	0	-	0.52	(0.515,0.57]	chr6	292159	3	EXON_LNCRNA	EXON_LNCRNA:INTRON	ENSG00000227706	ENSG00000227706.4	ENST00000657794.1:ENST00000652869.1:ENST00000662821.1:ENST00000658972.1:ENST00000663640.1:ENST00000660755.1:ENST00000660756.1:ENST00000667200.1:ENST00000654364.1:ENST00000670870.1:ENST00000666873.1	lncRNA	lncRNA	lncRNA	lncRNA	88	794	2	1.97877	2.139425	2.30008	7.30803e-5	1.49367e-5	0.00713598	0.00310933
chr13	50789876	50789976	5498105	0	+	0.36	(0.35,0.378]	chr13	526263	250	INTRON	INTRON	DLEU1	ENSG00000176124.15	ENST00000652753.1:ENST00000650996.1	lncRNA	lncRNA	lncRNA	lncRNA	5	52	2	1.4414	2.139245	2.83709	0.0629423	0.01435	0.196658	0.0966737
chr19	937631	937730	6992606	0	+	0.373737	(0.35,0.378]	chr19	692392	45	INTRON	INTRON	ARID3A	ENSG00000116017.11	ENST00000263620.8:ENST00000587532.5:ENST00000457152.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	52	2	1.4414	2.139245	2.83709	0.0629423	0.01435	0.196658	0.0966737
chr19	21149291	21149390	7040029	0	+	0.212121	[0,0.28]	chr19	701925	53	INTRON	INTRON	ZNF431	ENSG00000196705.8	ENST00000600692.5:ENST00000599296.5:ENST00000594425.5:ENST00000311048.11:ENST00000598331.1	protein_coding	protein_coding	protein_coding	protein_coding	4	69	2	2.10688	2.139185	2.17149	0.0308079	0.0307985	0.143385	0.13151
chr1	52469860	52469959	457717	0	-	0.343434	(0.32,0.35]	chr1	55012	12	INTRON	INTRON	TUT4	ENSG00000134744.14	ENST00000371544.7:ENST00000257177.9:ENST00000528642.5:ENST00000484723.6:ENST00000371541.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	116	2	1.77157	2.13912	2.50667	0.0193154	0.00118337	0.108861	0.031662
chr6	147239470	147239570	2989060	0	+	0.33	(0.32,0.35]	chr6	280012	2	SS5_PROX	SS5_PROX:INTRON	STXBP5	ENSG00000164506.15	ENST00000321680.11:ENST00000367481.7:ENST00000546097.5:ENST00000367480.7	protein_coding	protein_coding	protein_coding	protein_coding	6	80	2	1.77409	2.1391	2.50411	0.0414296	0.00267989	0.146067	0.0478767
chr14	68023597	68023697	5767413	0	+	0.43	(0.408,0.44]	chr14	547066	229	INTRON	INTRON	RAD51B	ENSG00000182185.19	ENST00000487861.5:ENST00000471583.6:ENST00000479335.5:ENST00000487270.5:ENST00000488612.5:ENST00000553595.5:ENST00000497460.5:ENST00000492236.5:ENST00000554244.5:ENST00000478014.5:ENST00000469165.6:ENST00000460526.5:ENST00000468382.5:ENST00000557045.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	36	2	1.88062	2.1390599999999997	2.3975	0.0534548	0.040266	0.162935	0.161534
chr15	44297547	44297647	6013153	0	+	0.44	(0.408,0.44]	chr15	572826	78	INTRON	INTRON	GOLM2	ENSG00000166734.20	ENST00000299957.11:ENST00000559222.5:ENST00000557945.5:ENST00000650436.1:ENST00000429162.2:ENST00000345795.6:ENST00000558735.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	36	2	1.88062	2.1390599999999997	2.3975	0.0534548	0.040266	0.162935	0.161534
chr1	147263823	147263921	212436	0	+	0.336735	(0.32,0.35]	chr1	23512	36	INTRON	INTRON	CHD1L	ENSG00000131778.20	ENST00000652587.1:ENST00000652616.1:ENST00000652494.1:ENST00000651207.1:ENST00000650721.1:ENST00000651226.1:ENST00000652161.1:ENST00000651510.1:ENST00000361293.10:ENST00000652278.1:ENST00000369259.4:ENST00000467213.5:ENST00000369258.8:ENST00000622533.4:ENST00000651410.1:ENST00000652486.1:ENST00000652346.1:ENST00000651407.1:ENST00000650828.1:ENST00000651070.1:ENST00000650714.1:ENST00000651420.1:ENST00000652357.1:ENST00000488864.5:ENST00000652188.1:ENST00000651820.1:ENST00000651231.1:ENST00000651206.1:ENST00000431239.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	91	2	2.05666	2.13903	2.2214	0.0103516	0.00840213	0.085045	0.0824581
chr11	57700318	57700414	4792607	0	+	0.291667	(0.28,0.32]	chr11	443650	4	UTR3	UTR3:EXON_MRNA	ZDHHC5	ENSG00000156599.11	ENST00000527985.5:ENST00000287169.8:ENST00000529480.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	55	2	1.60343	2.13898	2.67453	0.0669889	0.021289	0.183051	0.123318
chr14	21251448	21251548	5834986	0	-	0.51	(0.476,0.515]	chr14	554459	146	INTRON	INTRON	HNRNPC	ENSG00000092199.19	ENST00000336053.10:ENST00000553300.6:ENST00000554969.5:ENST00000556142.5:ENST00000554455.5:ENST00000430246.6:ENST00000553753.5:ENST00000555309.5:ENST00000555914.5:ENST00000557442.5:ENST00000556628.5:ENST00000556513.5:ENST00000555883.5:ENST00000557201.5:ENST00000556897.5:ENST00000420743.6:ENST00000554539.5:ENST00000554383.5:ENST00000555215.5:ENST00000555137.5:ENST00000554891.5:ENST00000556226.5:ENST00000555176.5:ENST00000553614.5:ENST00000557336.1:ENST00000557768.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	89	2	2.07116	2.13897	2.20678	0.00731321	0.00484957	0.076234	0.0605773
chr6	132816060	132816160	2961723	0	+	0.53	(0.515,0.57]	chr6	278487	2	SS3_PROX	SS3_PROX:INTRON	RPS12	ENSG00000112306.8	ENST00000230050.4:ENST00000484616.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	51	2	2.03361	2.13897	2.24433	0.0325854	0.00725078	0.145164	0.072984
chr1	224009619	224009718	321097	0	+	0.343434	(0.32,0.35]	chr1	36990	10	EXON_MRNA	EXON_MRNA:EXON_LNCRNA	SEPTIN7P13	ENSG00000185495.10	ENST00000449219.2:ENST00000572124.2:ENST00000540997.2	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript	8	102	2	2.09793	2.1389699999999996	2.18001	0.0156788	0.00302699	0.101453	0.0508897
chr16	70411370	70411469	6511187	0	-	0.383838	(0.378,0.408]	chr16	630689	99	INTRON	INTRON	ST3GAL2	ENSG00000157350.13	ENST00000342907.3:ENST00000566097.1:ENST00000561708.1:ENST00000567586.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	15	160	2	1.50618	2.138915	2.77165	0.0171129	1.15247e-4	0.104099	0.0092036
chr3	172231837	172231937	1561477	0	+	0.4	(0.378,0.408]	chr3	161568	45	INTRON	INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000469491.5:ENST00000336824.8:ENST00000416957.5:ENST00000443501.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	67	2	1.9714	2.13884	2.30628	0.0163339	0.0109363	0.101571	0.0924799
chr7	99416660	99416760	3361816	0	+	0.45	(0.44,0.476]	chr7	313951	4	SS5_PROX	SS5_PROX:INTRON	BUD31	ENSG00000106245.11	ENST00000403633.6:ENST00000222969.10:ENST00000496696.5:ENST00000456893.6:ENST00000431419.1:ENST00000466798.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	48	2	1.60176	2.1387400000000003	2.67572	0.0389597	0.0212064	0.160861	0.113017
chr22	38721044	38721142	7514462	0	+	0.5	(0.476,0.515]	chr22	767619	37	INTRON	INTRON	GTPBP1	ENSG00000100226.16	ENST00000216044.10:ENST00000418601.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	56	2	1.79187	2.13869	2.48551	0.0362169	0.00756632	0.138959	0.0773151
chr18	9148751	9148850	6869050	0	+	0.393939	(0.378,0.408]	chr18	680561	105	INTRON	INTRON	ANKRD12	ENSG00000101745.17	ENST00000585234.5:ENST00000262126.9:ENST00000577992.1:ENST00000540578.6:ENST00000581635.5:ENST00000400020.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	46	2	2.13703	2.13866	2.14029	0.0797592	0.0106742	0.19979	0.0917199
chr21	37390396	37390496	7406458	0	+	0.39	(0.378,0.408]	chr21	754850	149	INTRON	INTRON	DYRK1A	ENSG00000157540.22	ENST00000646523.1:ENST00000647425.1:ENST00000647188.2:ENST00000647504.1:ENST00000644942.1:ENST00000338785.8:ENST00000643624.1:ENST00000643551.1:ENST00000426672.6:ENST00000398960.7	protein_coding	protein_coding	protein_coding	protein_coding	4	46	2	2.13703	2.13866	2.14029	0.0797592	0.0106742	0.19979	0.0917199
chr12	102343021	102343121	5207103	0	+	0.47	(0.44,0.476]	chr12	492881	1456	EXON_LNCRNA	EXON_LNCRNA:INTRON	HELLPAR:LINC02456	ENSG00000281344.1:ENSG00000283052.1	ENST00000626826.1:ENST00000635615.1	lncRNA	lncRNA	lncRNA	lncRNA	4	42	2	1.81595	2.13865	2.46135	0.0374637	0.0317953	0.14477	0.140008
chr7	100016026	100016126	3363093	0	+	0.55	(0.515,0.57]	chr7	314209	3	SS5_PROX	SS5_PROX:INTRON	ZKSCAN1	ENSG00000106261.17	ENST00000535170.5:ENST00000324306.11:ENST00000426572.5:ENST00000482979.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	56	2	1.82142	2.138635	2.45585	0.0191173	0.00797827	0.108861	0.0798772
chr10	73036234	73036333	4647230	0	-	0.292929	(0.28,0.32]	chr10	427500	55	INTRON	INTRON	P4HA1	ENSG00000122884.13	ENST00000394890.7:ENST00000307116.6:ENST00000373008.6:ENST00000440381.5:ENST00000263556.3	protein_coding	protein_coding	protein_coding	protein_coding	4	60	2	1.76293	2.138595	2.51426	0.0766478	0.00781326	0.196164	0.0788246
chr2	177215038	177215138	925938	0	+	0.36	(0.35,0.378]	chr2	101737	1	SS3_PROX	SS3_PROX:INTRON	HNRNPA3	ENSG00000170144.21	ENST00000392524.6:ENST00000679159.1:ENST00000678111.1:ENST00000678421.1:ENST00000677863.1:ENST00000676681.1:ENST00000676629.1:ENST00000677337.1:ENST00000676488.1:ENST00000677043.1:ENST00000676874.1:ENST00000676762.1:ENST00000411529.6:ENST00000676736.1:ENST00000483137.2:ENST00000677508.1:ENST00000435711.5:ENST00000679328.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	65	2	2.10859	2.138595	2.1686	0.0272722	0.0116706	0.136494	0.0891208
chr6	13680204	13680304	3058909	0	-	0.31	(0.28,0.32]	chr6	284542	210	INTRON	INTRON	RANBP9	ENSG00000010017.13	ENST00000011619.6	protein_coding	protein_coding	protein_coding	protein_coding	4	60	2	1.76293	2.138595	2.51426	0.0766478	0.00781326	0.196164	0.0788246
chr1	96728981	96729080	168013	0	+	0.373737	(0.35,0.378]	chr1	18215	50	INTRON	INTRON	PTBP2	ENSG00000117569.19	ENST00000482253.5:ENST00000675735.1:ENST00000609116.5:ENST00000674951.1:ENST00000675080.1:ENST00000426398.3:ENST00000460706.5:ENST00000370197.5:ENST00000370198.5:ENST00000476419.5:ENST00000676292.1:ENST00000676096.1:ENST00000675365.1:ENST00000674579.1:ENST00000675401.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	51	2	1.93432	2.13855	2.34278	0.0481438	0.0129593	0.153019	0.0991015
chr22	47708938	47709035	7540136	0	+	0.28866000000000003	(0.28,0.32]	chr22	770713	15	INTRON	INTRON	ENSG00000224271	ENSG00000224271.7	ENST00000664761.1:ENST00000651071.1:ENST00000650683.1:ENST00000651536.1:ENST00000652499.1:ENST00000652656.1:ENST00000652072.1:ENST00000651445.1:ENST00000423737.5:ENST00000650660.1:ENST00000651056.1:ENST00000652611.1:ENST00000652399.1:ENST00000652123.1:ENST00000651311.1:ENST00000651458.1:ENST00000652505.1:ENST00000652702.2:ENST00000652334.1:ENST00000652030.2:ENST00000651403.1:ENST00000652228.1:ENST00000651124.1:ENST00000650972.1:ENST00000651985.1:ENST00000651637.1:ENST00000650924.1:ENST00000651003.1:ENST00000652168.1:ENST00000651948.2:ENST00000651293.1:ENST00000651939.1:ENST00000650787.1:ENST00000651517.1:ENST00000651662.1:ENST00000652690.1:ENST00000651638.1:ENST00000670853.1:ENST00000652750.1:ENST00000652080.1:ENST00000651294.1:ENST00000652164.1:ENST00000651538.1:ENST00000650775.1:ENST00000651983.1:ENST00000651033.1:ENST00000651584.1:ENST00000650884.1:ENST00000651270.1	lncRNA	lncRNA	lncRNA	lncRNA	8	100	2	1.6789	2.138535	2.59817	0.017572	0.00753816	0.11319	0.0748659
chr1	211823862	211823962	631339	0	-	0.43	(0.408,0.44]	chr1	74654	303	INTRON	INTRON	LPGAT1	ENSG00000123684.13	ENST00000366997.9:ENST00000366996.1	protein_coding	protein_coding	protein_coding	protein_coding	6	65	2	1.70409	2.13852	2.57295	0.028108	0.00640423	0.137011	0.0694534
chr15	40217416	40217495	6001836	0	+	0.35443	(0.35,0.378]	chr15	570691	1	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	BUB1B	ENSG00000156970.13	ENST00000412359.7:ENST00000287598.11:ENST00000558151.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	51	2	1.98929	2.138495	2.2877	0.0417909	0.0155765	0.147075	0.109411
chr16	47482839	47482938	6343517	0	+	0.484848	(0.476,0.515]	chr16	608849	185	INTRON	INTRON	PHKB	ENSG00000102893.17	ENST00000566037.6:ENST00000566044.5:ENST00000299167.12:ENST00000696809.1:ENST00000323584.10:ENST00000565424.2:ENST00000567402.5:ENST00000563376.5:ENST00000564873.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	71	2	1.69413	2.13833	2.58253	0.0200655	0.00600101	0.121043	0.0674604
chr6	34237050	34237139	2848106	0	+	0.629214	(0.57,1]	chr6	269042	3	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HMGA1	ENSG00000137309.20	ENST00000347617.10:ENST00000401473.7:ENST00000311487.9:ENST00000447654.5:ENST00000674029.1	protein_coding	protein_coding	protein_coding	protein_coding	9	51	2	2.05295	2.138305	2.22366	0.00415403	0.00344378	0.0568824	0.0539802
chr6	52271108	52271207	3105767	0	-	0.525253	(0.515,0.57]	chr6	290773	15	INTRON	INTRON	MCM3	ENSG00000112118.20	ENST00000616552.4:ENST00000229854.12:ENST00000596288.7:ENST00000419835.8:ENST00000421471.1	protein_coding	protein_coding	protein_coding	protein_coding	9	84	2	2.01561	2.138305	2.261	0.00518674	0.00333544	0.0654085	0.0512081
chr21	37377813	37377913	7406332	0	+	0.37	(0.35,0.378]	chr21	754850	23	INTRON	INTRON	DYRK1A	ENSG00000157540.22	ENST00000646523.1:ENST00000647425.1:ENST00000647188.2:ENST00000647504.1:ENST00000644942.1:ENST00000338785.8:ENST00000643624.1:ENST00000643551.1:ENST00000426672.6:ENST00000398960.7	protein_coding	protein_coding	protein_coding	protein_coding	9	103	2	1.95184	2.13828	2.32472	0.0066582	0.0052326	0.0703994	0.0656295
chr21	14515512	14515610	7427893	0	-	0.295918	(0.28,0.32]	chr21	757750	26	INTRON	INTRON	SAMSN1	ENSG00000155307.19	ENST00000647101.1:ENST00000644288.1:ENST00000400564.5:ENST00000400566.6:ENST00000285670.7:ENST00000619120.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	60	2	2.13651	2.1382649999999996	2.14002	0.0304107	0.0265696	0.134088	0.130461
chr3	156552961	156553057	1844492	0	-	0.25	[0,0.28]	chr3	185593	16	INTRON	INTRON	SSR3	ENSG00000114850.7	ENST00000265044.7:ENST00000467789.5:ENST00000476217.5:ENST00000463503.5:ENST00000496050.1:ENST00000467733.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	139	2	1.97924	2.138255	2.29727	0.0103431	0.00628008	0.0850389	0.0722266
chr17	82527894	82527994	6692686	0	+	0.51	(0.476,0.515]	chr17	654627	72	INTRON	INTRON	FOXK2	ENSG00000141568.21	ENST00000473637.6:ENST00000335255.10:ENST00000527313.6:ENST00000570585.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	78	2	1.30826	2.13825	2.96824	0.0587053	9.98194e-4	0.167915	0.0290732
chr8	129475552	129475652	4060030	0	-	0.41	(0.408,0.44]	chr8	369602	183	INTRON	INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1:ENST00000676273.1:ENST00000667643.1:ENST00000668791.1:ENST00000663716.1:ENST00000663572.1:ENST00000676148.1:ENST00000667962.1:ENST00000674877.1:ENST00000675316.1:ENST00000674656.1:ENST00000446592.7:ENST00000667341.1:ENST00000675186.1:ENST00000652971.1:ENST00000661447.1:ENST00000674863.1:ENST00000675498.1:ENST00000675527.1:ENST00000676108.1:ENST00000657647.1:ENST00000675589.1:ENST00000675913.1:ENST00000675109.1:ENST00000671632.1:ENST00000671311.1:ENST00000676099.1:ENST00000660652.1:ENST00000675522.1:ENST00000675183.1:ENST00000658861.1:ENST00000663991.1:ENST00000675044.1:ENST00000675435.1:ENST00000674639.1:ENST00000676069.1:ENST00000675532.1:ENST00000674762.1:ENST00000523151.6:ENST00000675948.1:ENST00000665364.1:ENST00000657251.1:ENST00000675166.1:ENST00000674883.1:ENST00000675867.1:ENST00000674580.1:ENST00000675393.1:ENST00000520048.1:ENST00000674906.1:ENST00000676030.1:ENST00000670588.1:ENST00000675072.1:ENST00000664936.1:ENST00000652914.1:ENST00000657069.1	lncRNA	lncRNA	lncRNA	lncRNA	15	155	2	1.60055	2.138245	2.67594	0.0113025	1.93157e-4	0.0886121	0.012131
chr1	168049597	168049696	249639	0	+	0.323232	(0.32,0.35]	chr1	29642	40	INTRON	INTRON	DCAF6	ENSG00000143164.16	ENST00000432587.6:ENST00000367843.7:ENST00000367840.4:ENST00000312263.10:ENST00000489398.1:ENST00000478668.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	11	127	2	1.73766	2.138235	2.53881	0.008138	0.00317745	0.0810802	0.0503705
chr7	74759349	74759448	3336318	0	+	0.424242	(0.408,0.44]	chr7	310546	6	EXON_MRNA	EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GTF2I	ENSG00000263001.8	ENST00000650807.1:ENST00000690345.1:ENST00000573035.6:ENST00000614986.4:ENST00000620879.4:ENST00000621734.4:ENST00000621040.4:ENST00000614048.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	48	2	1.49523	2.138225	2.78122	0.0534846	0.015812	0.180041	0.101453
chr1	6548471	6548571	368060	0	-	0.5	(0.476,0.515]	chr1	43225	29	INTRON	INTRON	NOL9	ENSG00000162408.11	ENST00000377705.6	protein_coding	protein_coding	protein_coding	protein_coding	3	35	2	1.79693	2.13821	2.47949	0.0649782	0.0326974	0.179417	0.145164
chr1	174245760	174245858	257975	0	+	0.5	(0.476,0.515]	chr1	30760	16	UTR3	UTR3:EXON_MRNA:INTRON	RABGAP1L	ENSG00000152061.24	ENST00000357444.10:ENST00000251507.8:ENST00000681986.1:ENST00000635248.1:ENST00000457696.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	35	2	1.79693	2.13821	2.47949	0.0649782	0.0326974	0.179417	0.145164
chr17	75145161	75145260	6835986	0	-	0.353535	(0.35,0.378]	chr17	675456	86	INTRON	INTRON	JPT1	ENSG00000189159.16	ENST00000409753.8:ENST00000476258.5:ENST00000482348.5:ENST00000304834.11:ENST00000356033.8:ENST00000470924.5:ENST00000481094.1:ENST00000481647.5:ENST00000580380.1:ENST00000581874.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	74	2	1.95579	2.1382	2.32061	0.0234538	0.00545884	0.11867	0.0669938
chr1	203814704	203814804	296871	0	+	0.3	(0.28,0.32]	chr1	34134	113	INTRON	INTRON	ZC3H11A:ZBED6	ENSG00000058673.17:ENSG00000257315.3	ENST00000367210.3:ENST00000453771.5:ENST00000432282.5:ENST00000638800.1:ENST00000367214.5:ENST00000639812.1:ENST00000367212.7:ENST00000332127.8:ENST00000550078.2:ENST00000495527.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	102	2	1.79721	2.138185	2.47916	0.0408024	0.0015115	0.1451	0.0360297
chr7	148843278	148843378	3670350	0	-	0.55	(0.515,0.57]	chr7	340616	59	INTRON	INTRON	EZH2	ENSG00000106462.12	ENST00000683292.1:ENST00000320356.7:ENST00000492143.5:ENST00000478654.5:ENST00000350995.6:ENST00000460911.5:ENST00000683744.1:ENST00000682317.1:ENST00000682263.1:ENST00000684300.1:ENST00000476773.5:ENST00000483967.5:ENST00000498186.5:ENST00000483012.1:ENST00000682401.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	120	2	1.75842	2.13814	2.51786	0.00872824	2.18365e-4	0.0788605	0.0129725
chr10	124762399	124762478	4712247	0	-	0.43038	(0.408,0.44]	chr10	434801	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	EEF1AKMT2	ENSG00000203791.15	ENST00000652548.1:ENST00000466270.5:ENST00000368836.7:ENST00000464099.5:ENST00000498770.1:ENST00000468738.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	78	2	1.73753	2.13807	2.53861	0.0275537	0.00202413	0.123904	0.0416117
chr3	41239893	41239985	1403455	0	+	0.282609	(0.28,0.32]	chr3	147483	7	UTR3	UTR3:EXON_MRNA:INTRON	CTNNB1	ENSG00000168036.18	ENST00000643541.1:ENST00000645210.1:ENST00000646381.1:ENST00000405570.6:ENST00000642248.1:ENST00000433400.6:ENST00000642992.1:ENST00000431914.6:ENST00000642836.1:ENST00000396185.8:ENST00000642986.1:ENST00000643031.1:ENST00000396183.7:ENST00000645982.1:ENST00000453024.6:ENST00000645900.1:ENST00000643992.1:ENST00000642886.1:ENST00000647390.1:ENST00000643052.1:ENST00000349496.11:ENST00000642426.1:ENST00000646074.1:ENST00000645276.1:ENST00000646116.1:ENST00000644873.1:ENST00000644867.1:ENST00000646725.1:ENST00000645493.1:ENST00000646369.1:ENST00000643977.1:ENST00000644524.1:ENST00000645305.1:ENST00000643297.1:ENST00000450969.6:ENST00000642315.1:ENST00000647021.1:ENST00000471014.2:ENST00000644501.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	127	2	1.68776	2.137945	2.58813	0.0272985	9.04617e-4	0.123904	0.0276086
chr4	138215718	138215816	2245562	0	-	0.377551	(0.35,0.378]	chr4	219490	7	INTRON	INTRON	SLC7A11	ENSG00000151012.13	ENST00000280612.9:ENST00000509248.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	97	2	1.4937	2.1379099999999998	2.78212	0.0168532	0.0133129	0.103549	0.100493
chr6	73520420	73520519	3139451	0	-	0.727273	(0.57,1]	chr6	292540	5	UTR5	UTR5:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	EEF1A1	ENSG00000156508.19	ENST00000676547.1:ENST00000309268.11:ENST00000610520.5:ENST00000316292.13:ENST00000615060.5:ENST00000356303.7:ENST00000331523.7:ENST00000490569.6:ENST00000678515.1:ENST00000676710.1:ENST00000678702.1:ENST00000677236.1:ENST00000455918.2:ENST00000491404.2:ENST00000488500.2:ENST00000495333.6:ENST00000678703.1:ENST00000677062.1:ENST00000678143.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	11	58	2	1.81468	2.1377550000000003	2.46083	0.00423968	0.00255312	0.0573022	0.0466386
chr1	77944350	77944449	494157	0	-	0.292929	(0.28,0.32]	chr1	58476	4	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	FUBP1	ENSG00000162613.17	ENST00000370768.7:ENST00000492724.1:ENST00000492405.5:ENST00000488814.5:ENST00000489495.5:ENST00000474632.5:ENST00000480673.5:ENST00000483894.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	62	2	1.76061	2.137745	2.51488	0.0380957	0.0253826	0.141678	0.133676
chr7	133709615	133709715	3422747	0	+	0.32	(0.28,0.32]	chr7	319395	791	INTRON	INTRON	EXOC4	ENSG00000131558.15	ENST00000253861.5:ENST00000479839.6:ENST00000483800.5:ENST00000469115.5:ENST00000489931.5:ENST00000482089.5:ENST00000460346.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	62	2	1.76061	2.137745	2.51488	0.0380957	0.0253826	0.141678	0.133676
chr11	64765094	64765192	4965154	0	-	0.479592	(0.476,0.515]	chr11	467482	6	UTR3	UTR3:EXON_MRNA	SF1	ENSG00000168066.21	ENST00000334944.9:ENST00000227503.13:ENST00000377394.7:ENST00000448404.5:ENST00000377390.8:ENST00000377387.5:ENST00000681407.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	109	2	2.08673	2.137735	2.18874	0.00486567	0.00255859	0.0607461	0.0466761
chr1	84661014	84661112	496473	0	-	0.336735	(0.32,0.35]	chr1	58854	22	INTRON	INTRON	SSX2IP	ENSG00000117155.17	ENST00000342203.8:ENST00000437941.6:ENST00000481102.5:ENST00000476905.6:ENST00000605755.5:ENST00000603677.1:ENST00000460500.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	91	2	1.70947	2.13768	2.56589	0.0328375	0.00204522	0.133816	0.041908
chr10	5448152	5448251	4384217	0	+	0.363636	(0.35,0.378]	chr10	404411	9	INTRON	INTRON	NET1	ENSG00000173848.19	ENST00000355029.9:ENST00000449083.5:ENST00000486354.1:ENST00000380359.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	46	2	1.87586	2.137625	2.39939	0.0458078	0.0268864	0.149888	0.135275
chr15	49224320	49224416	6019660	0	+	0.354167	(0.35,0.378]	chr15	573713	8	INTRON	INTRON	GALK2	ENSG00000156958.15	ENST00000559883.5:ENST00000559963.5:ENST00000327171.7:ENST00000560654.5:ENST00000558775.5:ENST00000559040.1:ENST00000396509.6:ENST00000558956.5:ENST00000559208.5:ENST00000560031.6:ENST00000560119.5:ENST00000558145.5:ENST00000544523.5:ENST00000560138.5:ENST00000559423.5:ENST00000559454.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	46	2	1.87586	2.137625	2.39939	0.0458078	0.0268864	0.149888	0.135275
chr5	83060788	83060886	2666530	0	-	0.367347	(0.35,0.378]	chr5	252478	33	INTRON	INTRON	TMEM167A	ENSG00000174695.10	ENST00000502346.2:ENST00000511450.5:ENST00000511118.1:ENST00000504622.5:ENST00000509770.1:ENST00000503892.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	46	2	1.87586	2.137625	2.39939	0.0458078	0.0268864	0.149888	0.135275
chr17	39396266	39396366	6766599	0	-	0.49	(0.476,0.515]	chr17	665497	527	INTRON	INTRON	FBXL20	ENSG00000108306.13	ENST00000264658.11:ENST00000583610.5:ENST00000394294.7:ENST00000577399.5:ENST00000647139.1	protein_coding	protein_coding	protein_coding	protein_coding	11	95	2	1.43454	2.13761	2.84068	0.0214195	0.00217133	0.123836	0.0417893
chr3	177128194	177128293	1871751	0	-	0.323232	(0.32,0.35]	chr3	187412	22	INTRON	INTRON	TBL1XR1	ENSG00000177565.18	ENST00000457928.7:ENST00000430069.5:ENST00000673974.1:ENST00000352800.10:ENST00000422442.6:ENST00000428970.5:ENST00000424913.5:ENST00000437738.5:ENST00000431421.5:ENST00000635794.1:ENST00000630796.2:ENST00000450267.5:ENST00000630833.2:ENST00000431674.5:ENST00000422066.5:ENST00000443315.5:ENST00000627825.2:ENST00000427349.5:ENST00000413084.5:ENST00000637137.1:ENST00000491623.2:ENST00000637544.1:ENST00000636478.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	101	2	2.02448	2.137585	2.25069	0.00934678	0.00595393	0.0817766	0.0698475
chr17	67363973	67364070	6826121	0	-	0.505155	(0.476,0.515]	chr17	674633	7	INTRON	INTRON	PSMD12	ENSG00000197170.10	ENST00000356126.8:ENST00000357146.4:ENST00000584008.5:ENST00000584289.5:ENST00000581618.1:ENST00000579365.5:ENST00000578015.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	99	2	2.06195	2.13754	2.21313	0.00539948	0.00401502	0.064414	0.0578059
chr2	241251677	241251774	1347904	0	-	0.494845	(0.476,0.515]	chr2	141567	8	INTRON	INTRON	HDLBP	ENSG00000115677.18	ENST00000391975.5:ENST00000427183.6:ENST00000310931.10:ENST00000391976.6:ENST00000373292.8:ENST00000498595.5:ENST00000477477.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	53	2	1.38864	2.13747	2.8863	0.0547008	0.0111679	0.182743	0.0877435
chr20	35737467	35737567	7336509	0	-	0.53	(0.515,0.57]	chr20	747495	5	INTRON	INTRON	RBM39	ENSG00000131051.24	ENST00000253363.11:ENST00000639702.1:ENST00000656873.1:ENST00000463004.5:ENST00000361162.10:ENST00000461283.5:ENST00000403542.6:ENST00000338163.10:ENST00000528062.7:ENST00000429968.5:ENST00000444878.5:ENST00000665058.1:ENST00000374038.7:ENST00000412738.5:ENST00000434927.5:ENST00000425184.5:ENST00000481037.5:ENST00000455343.5:ENST00000416108.5:ENST00000426951.5:ENST00000477334.1:ENST00000442447.5:ENST00000449489.5:ENST00000433027.5:ENST00000487604.1:ENST00000453310.5:ENST00000416529.5:ENST00000397370.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	35	313	2	2.05523	2.1374649999999997	2.2197	4.26595e-4	5.0876e-5	0.0189958	0.00585477
chr8	129502357	129502457	4060305	0	-	0.34	(0.32,0.35]	chr8	369642	72	INTRON	INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1:ENST00000676273.1:ENST00000667643.1:ENST00000668791.1:ENST00000663716.1:ENST00000663572.1:ENST00000676148.1:ENST00000667962.1:ENST00000674877.1:ENST00000675316.1:ENST00000674656.1:ENST00000446592.7:ENST00000667341.1:ENST00000675186.1:ENST00000652971.1:ENST00000661447.1:ENST00000674863.1:ENST00000675498.1:ENST00000675527.1:ENST00000676108.1:ENST00000657647.1:ENST00000675589.1:ENST00000675913.1:ENST00000675109.1:ENST00000671632.1:ENST00000671311.1:ENST00000676099.1:ENST00000660652.1:ENST00000675522.1:ENST00000675183.1:ENST00000658861.1:ENST00000663991.1:ENST00000675044.1:ENST00000675435.1:ENST00000674639.1:ENST00000676069.1:ENST00000675532.1:ENST00000674762.1:ENST00000523151.6:ENST00000675948.1:ENST00000665364.1:ENST00000657251.1:ENST00000675166.1:ENST00000674883.1:ENST00000675867.1:ENST00000674580.1:ENST00000675393.1:ENST00000520048.1:ENST00000674906.1:ENST00000676030.1:ENST00000670588.1:ENST00000675072.1:ENST00000664936.1:ENST00000652914.1:ENST00000657069.1	lncRNA	lncRNA	lncRNA	lncRNA	9	116	2	1.86816	2.1374	2.40664	0.0138355	0.00189533	0.0952812	0.0402736
chr1	241864853	241864952	344547	0	+	0.373737	(0.35,0.378]	chr1	40133	30	INTRON	INTRON	EXO1	ENSG00000174371.17	ENST00000366548.8:ENST00000348581.9:ENST00000518483.5	protein_coding	protein_coding	protein_coding	protein_coding	3	39	2	1.87717	2.137315	2.39746	0.0555068	0.041314	0.165463	0.161534
chr17	16170807	16170906	6734786	0	-	0.363636	(0.35,0.378]	chr17	660731	53	INTRON	INTRON	NCOR1	ENSG00000141027.22	ENST00000268712.8:ENST00000395851.5:ENST00000395848.5:ENST00000411510.5:ENST00000582357.5:ENST00000436828.5:ENST00000460276.5:ENST00000585296.1:ENST00000579974.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	39	2	1.87717	2.137315	2.39746	0.0555068	0.041314	0.165463	0.161534
chr1	52500560	52500660	458035	0	-	0.48	(0.476,0.515]	chr1	55071	30	INTRON	INTRON	TUT4	ENSG00000134744.14	ENST00000371544.7:ENST00000257177.9:ENST00000528642.5:ENST00000484723.6:ENST00000371541.5:ENST00000473856.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	36	2	1.99197	2.137305	2.28264	0.0534132	0.039572	0.179876	0.143072
chr19	41863985	41864073	7071832	0	+	0.5	(0.476,0.515]	chr19	706889	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPS19	ENSG00000105372.8	ENST00000598742.6:ENST00000600467.6:ENST00000601492.5:ENST00000221975.6:ENST00000598261.2:ENST00000593863.5:ENST00000598399.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	36	2	1.99197	2.137305	2.28264	0.0534132	0.039572	0.179876	0.143072
chr3	136868324	136868424	1512498	0	+	0.51	(0.476,0.515]	chr3	158193	4	INTRON	INTRON	NCK1	ENSG00000158092.7	ENST00000481752.6:ENST00000288986.6:ENST00000491539.5:ENST00000485096.5:ENST00000476286.1:ENST00000478862.1:ENST00000460960.1:ENST00000488930.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	36	2	1.99197	2.137305	2.28264	0.0534132	0.039572	0.179876	0.143072
chr3	142373909	142374008	1836860	0	-	0.474747	(0.44,0.476]	chr3	184584	22	INTRON	INTRON	XRN1	ENSG00000114127.11	ENST00000264951.8:ENST00000392981.7:ENST00000498077.6:ENST00000472625.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	56	2	2.03266	2.137275	2.24189	0.0193405	0.0155853	0.109411	0.108861
chr13	110893027	110893088	5650416	0	-	0.393443	(0.378,0.408]	chr13	538342	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	ANKRD10	ENSG00000088448.14	ENST00000267339.6:ENST00000485844.1:ENST00000603993.1:ENST00000489973.6:ENST00000310847.8:ENST00000465753.1:ENST00000475809.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	26	272	2	2.03482	2.137165	2.23951	9.5675e-4	3.27176e-4	0.0282401	0.0160995
chr13	20021211	20021311	5453061	0	+	0.54	(0.515,0.57]	chr13	522478	12	INTRON	INTRON	ZMYM2	ENSG00000121741.17	ENST00000382874.6:ENST00000610343.5:ENST00000382871.3	protein_coding	protein_coding	protein_coding	protein_coding	4	40	2	1.9459	2.13713	2.32836	0.0429089	0.0126662	0.148082	0.0982897
chr7	157182728	157182828	3454385	0	+	0.54	(0.515,0.57]	chr7	322939	4	SS5_PROX	SS5_PROX:INTRON	UBE3C	ENSG00000009335.18	ENST00000611269.4:ENST00000348165.10:ENST00000389103.4	protein_coding	protein_coding	protein_coding	protein_coding	4	40	2	1.9459	2.13713	2.32836	0.0429089	0.0126662	0.148082	0.0982897
chr8	65615815	65615915	3959528	0	-	0.52	(0.515,0.57]	chr8	363270	20	INTRON	INTRON	ARMC1	ENSG00000104442.10	ENST00000276569.8:ENST00000458464.3:ENST00000528721.5:ENST00000518908.5:ENST00000523384.1:ENST00000519352.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	40	2	1.9459	2.13713	2.32836	0.0429089	0.0126662	0.148082	0.0982897
chr17	81568345	81568430	6848898	0	-	0.564706	(0.515,0.57]	chr17	678144	3	SS3_PROX	SS3_PROX:INTRON	NPLOC4	ENSG00000182446.14	ENST00000331134.11:ENST00000573519.5:ENST00000571714.5:ENST00000572824.1:ENST00000573212.5:ENST00000576713.6:ENST00000374747.9:ENST00000574897.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	36	2	1.7492	2.1371200000000004	2.52504	0.0382504	0.029342	0.15832	0.128055
chr7	32528520	32528620	3303564	0	+	0.56	(0.515,0.57]	chr7	306758	324	INTRON	INTRON	AVL9	ENSG00000105778.20	ENST00000485228.1:ENST00000318709.9:ENST00000459629.1:ENST00000409301.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	36	2	1.7492	2.1371200000000004	2.52504	0.0382504	0.029342	0.15832	0.128055
chr14	74892058	74892149	5789885	0	+	0.450549	(0.44,0.476]	chr14	548587	1	INTRON	INTRON	DLST	ENSG00000119689.15	ENST00000556460.5:ENST00000555492.5:ENST00000554612.5:ENST00000334220.9:ENST00000238671.11:ENST00000555190.5:ENST00000555089.5:ENST00000554806.5:ENST00000555988.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	69	2	2.06341	2.1371000000000002	2.21079	0.0194581	0.00871005	0.119831	0.0788605
chr1	50923680	50923780	451890	0	-	0.38	(0.378,0.408]	chr1	54267	653	INTRON	INTRON	FAF1	ENSG00000185104.21	ENST00000396153.7:ENST00000487898.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	49	2	2.11103	2.13703	2.16303	0.0266911	0.0252473	0.134419	0.12011
chr7	32888389	32888489	3515590	0	-	0.38	(0.378,0.408]	chr7	327782	81	INTRON	INTRON	KBTBD2	ENSG00000170852.12	ENST00000304056.9:ENST00000485611.5:ENST00000452926.1:ENST00000453627.1:ENST00000423022.1:ENST00000424468.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	49	2	2.11103	2.13703	2.16303	0.0266911	0.0252473	0.134419	0.12011
chr8	37866273	37866371	3935606	0	-	0.438776	(0.408,0.44]	chr8	360553	28	INTRON	INTRON	RAB11FIP1	ENSG00000156675.16	ENST00000330843.9:ENST00000287263.8:ENST00000522727.5:ENST00000523182.5:ENST00000522774.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	78	2	2.00961	2.1370050000000003	2.2644	0.00931007	0.00768371	0.0855292	0.0753803
chr1	113976581	113976680	192291	0	+	0.383838	(0.378,0.408]	chr1	21240	32	UTR3	UTR3:EXON_MRNA	HIPK1	ENSG00000163349.22	ENST00000426820.7:ENST00000626993.2:ENST00000369558.5:ENST00000340480.8:ENST00000361587.3	protein_coding	protein_coding	protein_coding	protein_coding	5	59	2	1.8374	2.136985	2.43657	0.0299228	0.0106733	0.142135	0.0861859
chr22	42585410	42585505	7594723	0	-	0.515789	(0.515,0.57]	chr22	777828	2	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	POLDIP3	ENSG00000100227.19	ENST00000348657.6:ENST00000252115.10:ENST00000445215.5:ENST00000451060.6:ENST00000339677.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	40	2	2.08547	2.136985	2.1885	0.0289426	0.0202537	0.1274	0.121364
chr1	65260815	65260915	135599	0	+	0.39	(0.378,0.408]	chr1	15341	58	INTRON	INTRON	DNAJC6	ENSG00000116675.16	ENST00000463018.5:ENST00000494710.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	147	2	1.9089	2.136895	2.36489	0.00763296	4.21948e-4	0.0752119	0.0183838
chr1	206639242	206639342	301680	0	+	0.37	(0.35,0.378]	chr1	34676	2	SS5_PROX	SS5_PROX:INTRON	DYRK3	ENSG00000143479.18	ENST00000367109.8:ENST00000367108.7:ENST00000489878.1:ENST00000649163.1:ENST00000441486.5:ENST00000367106.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	62	2	1.5118	2.13686	2.76192	0.0789277	0.00265021	0.198963	0.0474328
chr4	1898920	1899020	1910850	0	+	0.4	(0.378,0.408]	chr4	191728	3	SS3_PROX	SS3_PROX:INTRON	NSD2	ENSG00000109685.19	ENST00000508803.6:ENST00000507820.5:ENST00000508355.5:ENST00000514045.5:ENST00000515806.1:ENST00000398261.6:ENST00000382891.9:ENST00000353275.9:ENST00000382892.6:ENST00000382895.7:ENST00000312087.10:ENST00000420906.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	57	2	1.67073	2.136845	2.60296	0.0267851	0.0219426	0.123836	0.123349
chr9	112328742	112328842	4317912	0	-	0.41	(0.408,0.44]	chr9	397079	305	INTRON	INTRON	PTBP3	ENSG00000119314.16	ENST00000334318.10:ENST00000458258.5:ENST00000374257.6:ENST00000374255.6:ENST00000343327.6:ENST00000487997.1:ENST00000210227.4:ENST00000450374.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	44	2	1.69172	2.136755	2.58179	0.0486032	0.024638	0.153946	0.131869
chr14	100367593	100367686	5968817	0	-	0.397849	(0.378,0.408]	chr14	567112	12	INTRON	INTRON	WARS1	ENSG00000140105.18	ENST00000392882.7:ENST00000358655.8:ENST00000355338.6:ENST00000344102.9:ENST00000557135.5:ENST00000556645.5:ENST00000553395.5:ENST00000556504.5:ENST00000557722.5:ENST00000557297.5:ENST00000556435.5:ENST00000553808.5:ENST00000554331.5:ENST00000555063.5:ENST00000556338.5:ENST00000557239.5:ENST00000556698.5:ENST00000553524.5:ENST00000555410.5:ENST00000556579.5:ENST00000554772.5:ENST00000556660.5:ENST00000556783.5:ENST00000553413.5:ENST00000557094.5:ENST00000553769.6:ENST00000553545.5:ENST00000554820.5:ENST00000557347.5:ENST00000554509.5:ENST00000556209.5:ENST00000554605.5:ENST00000555813.5:ENST00000556695.5:ENST00000556295.5:ENST00000555031.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	121	2	1.44787	2.13675	2.82563	0.0496837	8.32217e-5	0.156383	0.00767886
chr22	21794057	21794156	7560647	0	-	0.30303	(0.28,0.32]	chr22	773370	49	INTRON	INTRON	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	23	318	2	1.86979	2.136705	2.40362	0.00466773	1.37244e-4	0.0600108	0.0100829
chr15	89609449	89609548	6097454	0	+	0.434343	(0.408,0.44]	chr15	580351	1	INTRON	INTRON	TICRR	ENSG00000140534.14	ENST00000268138.12:ENST00000560985.5	protein_coding	protein_coding	protein_coding	protein_coding	8	79	2	1.29079	2.136695	2.9826	0.0625053	9.23082e-4	0.175709	0.0278392
chr7	73516139	73516239	3555039	0	-	0.35	(0.32,0.35]	chr7	330813	49	INTRON	INTRON	BAZ1B	ENSG00000009954.11	ENST00000339594.9:ENST00000404251.1	protein_coding	protein_coding	protein_coding	protein_coding	7	84	2	1.57911	2.13666	2.69421	0.0313129	0.00484681	0.144381	0.0605691
chr14	20993773	20993870	5656080	0	+	0.216495	[0,0.28]	chr14	539206	7	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	METTL17	ENSG00000165792.18	ENST00000339374.11:ENST00000382985.8:ENST00000556670.6:ENST00000555533.6:ENST00000555640.6:ENST00000553564.5:ENST00000557550.6:ENST00000555670.1:ENST00000555902.6:ENST00000554354.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	68	2	1.94204	2.136505	2.33097	0.0544139	0.0158969	0.164972	0.109464
chr22	16617614	16617714	7473519	0	+	0.41	(0.408,0.44]	chr22	761986	6	INTRON	INTRON	TPTEP1	ENSG00000100181.22	ENST00000558085.6:ENST00000400593.6:ENST00000426585.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	4	42	2	1.75791	2.136415	2.51492	0.0378795	0.0329839	0.157034	0.133816
chr6	170568189	170568281	3037524	0	+	0.423913	(0.408,0.44]	chr6	283143	3	INTRON	INTRON	TBP	ENSG00000112592.15	ENST00000540980.5:ENST00000392092.7:ENST00000230354.10:ENST00000636632.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	42	2	1.75791	2.136415	2.51492	0.0378795	0.0329839	0.157034	0.133816
chr10	92615947	92616043	4490914	0	+	0.520833	(0.515,0.57]	chr10	413574	20	INTRON	INTRON	KIF11	ENSG00000138160.7	ENST00000676757.1:ENST00000676647.1:ENST00000260731.5:ENST00000676621.1:ENST00000677720.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	30	2	2.03361	2.13638	2.23915	0.0596178	0.0325854	0.16883600000000001	0.145164
chr15	52022354	52022451	6029051	0	+	0.536082	(0.515,0.57]	chr15	574417	4	INTRON	INTRON	MAPK6	ENSG00000069956.14	ENST00000560802.1:ENST00000691380.1:ENST00000558063.5:ENST00000560254.1:ENST00000681888.1:ENST00000261845.7:ENST00000680066.1:ENST00000680777.1:ENST00000558100.1:ENST00000680652.1:ENST00000558841.1:ENST00000558891.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	30	2	2.03361	2.13638	2.23915	0.0596178	0.0325854	0.16883600000000001	0.145164
chr4	39870059	39870156	2131100	0	-	0.463918	(0.44,0.476]	chr4	210128	2	INTRON	INTRON	PDS5A	ENSG00000121892.15	ENST00000303538.13:ENST00000507020.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	89	2	2.12136	2.13636	2.15136	0.0061794	0.00591413	0.0694038	0.0677395
chr12	116151605	116151705	5424285	0	-	0.36	(0.35,0.378]	chr12	518263	397	INTRON	INTRON	MED13L	ENSG00000123066.9	ENST00000281928.9:ENST00000650226.1:ENST00000548743.2:ENST00000647567.1:ENST00000551197.2	protein_coding	protein_coding	protein_coding	protein_coding	5	53	2	1.7339	2.13623	2.53856	0.0326077	0.0260366	0.133687	0.133676
chr1	29001703	29001802	59833	0	+	0.363636	(0.35,0.378]	chr1	7649	40	INTRON	INTRON	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000647918.1:ENST00000646800.1:ENST00000644342.1:ENST00000646189.1:ENST00000482464.6:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000646260.1:ENST00000373798.5:ENST00000644600.1:ENST00000649674.1:ENST00000643173.1:ENST00000343067.9:ENST00000644780.1:ENST00000650265.1:ENST00000648181.1:ENST00000643604.1:ENST00000648891.1:ENST00000373797.2:ENST00000349460.9:ENST00000645184.1:ENST00000645111.1:ENST00000643302.1:ENST00000645999.1:ENST00000642643.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	75	2	1.70607	2.136205	2.56634	0.0482819	0.00190773	0.153283	0.0403772
chr1	99709941	99710032	514754	0	-	0.362637	(0.35,0.378]	chr1	60328	3	INTRON	INTRON	FRRS1	ENSG00000156869.14	ENST00000646001.2:ENST00000287474.9	protein_coding	protein_coding	protein_coding	protein_coding	6	75	2	1.70607	2.136205	2.56634	0.0482819	0.00190773	0.153283	0.0403772
chr19	38626802	38626902	7065615	0	+	0.49	(0.476,0.515]	chr19	705450	3	INTRON	INTRON	EIF3K	ENSG00000178982.10	ENST00000614624.4:ENST00000593149.5:ENST00000588934.5:ENST00000538434.5:ENST00000593062.5:ENST00000248342.9:ENST00000545173.6:ENST00000591409.5:ENST00000586513.4:ENST00000592558.1:ENST00000588299.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	56	2	1.63838	2.13617	2.63396	0.0555021	0.00426634	0.165463	0.0596808
chr5	65961775	65961875	2371196	0	+	0.44	(0.408,0.44]	chr5	228472	346	INTRON	INTRON	ERBIN	ENSG00000112851.15	ENST00000380943.6:ENST00000507490.1:ENST00000416865.6:ENST00000380935.5:ENST00000284037.10:ENST00000380938.6:ENST00000511297.5:ENST00000506030.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	47	2	1.88062	2.13612	2.39162	0.0534548	0.0105837	0.162935	0.0911864
chr5	461794	461876	2313260	0	+	0.365854	(0.35,0.378]	chr5	223787	3	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	EXOC3	ENSG00000180104.16	ENST00000512944.6:ENST00000515601.6:ENST00000315013.9:ENST00000503889.2:ENST00000511015.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	74	2	2.03027	2.136115	2.24196	0.0185322	0.00744693	0.108861	0.0772645
chr22	19099970	19100069	7551790	0	-	0.474747	(0.44,0.476]	chr22	771903	101	INTRON	INTRON	DGCR2	ENSG00000070413.20	ENST00000537045.5:ENST00000545799.5:ENST00000263196.12:ENST00000389262.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	53	2	1.35267	2.136085	2.9195	0.060678	0.0102021	0.192323	0.0850389
chr16	21516428	21516528	6461521	0	-	0.48	(0.476,0.515]	chr16	623383	99	INTRON	INTRON	SMG1P3	ENSG00000180747.15	ENST00000522841.6:ENST00000437413.2:ENST00000435197.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	15	152	2	1.74437	2.1360799999999998	2.52779	0.00472526	6.23394e-4	0.0633018	0.0229194
chr20	31713650	31713750	7325280	0	-	0.32	(0.28,0.32]	chr20	745996	287	INTRON	INTRON	BCL2L1	ENSG00000171552.14	ENST00000376055.9:ENST00000376062.6:ENST00000307677.5:ENST00000420488.6:ENST00000439267.2:ENST00000678563.1:ENST00000456404.6:ENST00000676942.1:ENST00000676582.1:ENST00000434194.2:ENST00000677194.1:ENST00000678671.1:ENST00000677494.1:ENST00000422920.2:ENST00000450273.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	72	2	1.90249	2.13606	2.36963	0.0261803	0.0157022	0.133676	0.101453
chr7	137971371	137971471	3655434	0	-	0.53	(0.515,0.57]	chr7	339370	376	INTRON	INTRON	CREB3L2	ENSG00000182158.16	ENST00000330387.11:ENST00000456390.5:ENST00000452463.5	protein_coding	protein_coding	protein_coding	protein_coding	4	38	2	1.811	2.1360200000000003	2.46104	0.032841	0.0325989	0.145164	0.133687
chr2	31982992	31983092	1090841	0	-	0.5	(0.476,0.515]	chr2	116913	198	INTRON	INTRON	MEMO1:DPY30	ENSG00000162959.14:ENSG00000162961.14	ENST00000295065.9:ENST00000446765.5:ENST00000404530.6:ENST00000490459.5:ENST00000426310.6:ENST00000413686.1:ENST00000407893.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	56	2	1.83961	2.136015	2.43242	0.0314489	0.0091895	0.13151	0.0855292
chr19	39384119	39384216	7067635	0	+	0.28866000000000003	(0.28,0.32]	chr19	705754	5	UTR3	UTR3:EXON_MRNA:INTRON	SAMD4B	ENSG00000179134.16	ENST00000610417.5:ENST00000598913.5:ENST00000314471.10:ENST00000596368.1	protein_coding	protein_coding	protein_coding	protein_coding	6	82	2	1.83325	2.135975	2.4387	0.0199548	0.0126802	0.120668	0.0926667
chr6	169671156	169671256	3266815	0	-	0.52	(0.515,0.57]	chr6	303237	3	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	WDR27	ENSG00000184465.16	ENST00000448612.6:ENST00000648472.1:ENST00000423258.5:ENST00000647790.1:ENST00000647873.1:ENST00000649303.1:ENST00000647889.1:ENST00000648017.1:ENST00000650296.1:ENST00000546953.1:ENST00000649806.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	16	148	2	1.79979	2.135945	2.4721	0.00392683	2.35178e-4	0.0571759	0.0140615
chr6	47559241	47559341	2874385	0	+	0.41	(0.408,0.44]	chr6	272749	41	INTRON	INTRON	CD2AP	ENSG00000198087.7	ENST00000359314.5	protein_coding	protein_coding	protein_coding	protein_coding	12	126	2	1.25594	2.13593	3.01592	0.0513299	5.77417e-5	0.158238	0.00620725
chr2	138497166	138497266	1235517	0	-	0.44	(0.408,0.44]	chr2	131479	196	INTRON	INTRON	SPOPL-DT	ENSG00000228043.5	ENST00000431985.5:ENST00000414911.1	lncRNA	lncRNA	lncRNA	lncRNA	4	47	2	2.05947	2.1359250000000003	2.21238	0.0333232	0.0193525	0.134145	0.119831
chr1	71080839	71080939	483028	0	-	0.45	(0.44,0.476]	chr1	57888	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ZRANB2	ENSG00000132485.14	ENST00000370920.8:ENST00000254821.10:ENST00000611683.1	protein_coding	protein_coding	protein_coding	protein_coding	5	57	2	1.75627	2.135905	2.51554	0.0380723	0.00777207	0.157702	0.0757731
chr7	4978206	4978304	3271077	0	+	0.469388	(0.44,0.476]	chr7	304011	14	INTRON	INTRON	RNF216P1	ENSG00000196204.12	ENST00000406089.6:ENST00000493407.5:ENST00000477090.5:ENST00000404006.5:ENST00000403969.5:ENST00000494947.5:ENST00000429902.5:ENST00000406608.2	lncRNA	lncRNA	lncRNA	lncRNA	5	57	2	1.75627	2.135905	2.51554	0.0380723	0.00777207	0.157702	0.0757731
chr10	22698038	22698138	4580339	0	-	0.55	(0.515,0.57]	chr10	422046	35	INTRON	INTRON	PIP4K2A	ENSG00000150867.14	ENST00000376573.9:ENST00000545335.5	protein_coding	protein_coding	protein_coding	protein_coding	6	55	2	1.68552	2.1358800000000002	2.58624	0.0292028	0.00526399	0.141637	0.0633874
chr16	21850578	21850678	6461734	0	-	0.53	(0.515,0.57]	chr16	623426	1	SS5_PROX	SS5_PROX:INTRON	NPIPB4	ENSG00000185864.18	ENST00000415645.6:ENST00000682606.1:ENST00000542133.5:ENST00000614197.4:ENST00000539318.5:ENST00000341400.11:ENST00000518761.8:ENST00000543654.1:ENST00000520808.6:ENST00000542338.1:ENST00000539191.1:ENST00000536041.5:ENST00000529969.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	55	2	1.68552	2.1358800000000002	2.58624	0.0292028	0.00526399	0.141637	0.0633874
chr3	14478365	14478465	1370172	0	+	0.36	(0.35,0.378]	chr3	144387	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	SLC6A6	ENSG00000131389.18	ENST00000613060.4:ENST00000618278.4:ENST00000610642.4:ENST00000649500.1:ENST00000622186.5:ENST00000452151.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	54	2	1.40722	2.135865	2.86451	0.0733776	0.0109111	0.190105	0.0923273
chr2	69911054	69911154	805462	0	+	0.49	(0.476,0.515]	chr2	89902	56	INTRON	INTRON	MXD1	ENSG00000059728.11	ENST00000435990.5	protein_coding	protein_coding	protein_coding	protein_coding	3	35	2	2.13304	2.13579	2.13854	0.0776563	0.024866	0.196285	0.132101
chr2	151447861	151447959	893604	0	+	0.306122	(0.28,0.32]	chr2	98976	9	INTRON	INTRON	RIF1	ENSG00000080345.18	ENST00000453091.6:ENST00000428287.6:ENST00000444746.7:ENST00000243326.9:ENST00000414861.6:ENST00000430328.6	protein_coding	protein_coding	protein_coding	protein_coding	7	92	2	1.52982	2.1357850000000003	2.74175	0.0379288	0.00457205	0.157212	0.0595107
chr2	229827195	229827294	1340704	0	-	0.50505	(0.476,0.515]	chr2	140409	83	INTRON	INTRON	TRIP12	ENSG00000153827.14	ENST00000675453.1:ENST00000675903.1:ENST00000283943.9:ENST00000675423.1:ENST00000389044.8:ENST00000389045.7:ENST00000479037.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	44	2	1.79187	2.1356800000000002	2.47949	0.0362169	0.0326974	0.145164	0.138959
chr9	137641979	137642078	4223703	0	+	0.50505	(0.476,0.515]	chr9	388158	40	INTRON	INTRON	EHMT1	ENSG00000181090.21	ENST00000462484.5:ENST00000371394.6:ENST00000630754.2:ENST00000460843.6:ENST00000626216.2:ENST00000637593.1:ENST00000629335.2:ENST00000637335.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	44	2	1.79187	2.1356800000000002	2.47949	0.0362169	0.0326974	0.145164	0.138959
chr1	66971154	66971230	139913	0	+	0.315789	(0.28,0.32]	chr1	15694	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MIER1	ENSG00000198160.15	ENST00000355977.10:ENST00000371018.7:ENST00000357692.6:ENST00000371016.5:ENST00000371014.5:ENST00000401041.6:ENST00000355356.3:ENST00000401042.7	protein_coding	protein_coding	protein_coding	protein_coding	3	44	2	2.08149	2.1356200000000003	2.18975	0.0776042	0.031124	0.196285	0.143644
chr2	71418221	71418316	807912	0	+	0.294737	(0.28,0.32]	chr2	90287	1	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	ZNF638	ENSG00000075292.19	ENST00000409544.5:ENST00000264447.9:ENST00000487638.5:ENST00000494241.5:ENST00000409407.4:ENST00000483421.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	44	2	2.08149	2.1356200000000003	2.18975	0.0776042	0.031124	0.196285	0.143644
chr4	102815964	102816063	2213244	0	-	0.353535	(0.35,0.378]	chr4	216759	31	INTRON	INTRON	UBE2D3	ENSG00000109332.20	ENST00000453744.7:ENST00000394804.6:ENST00000394803.9:ENST00000394801.8:ENST00000343106.9:ENST00000503742.5:ENST00000321805.11:ENST00000350435.11:ENST00000338145.7:ENST00000349311.12:ENST00000504211.5:ENST00000357194.10:ENST00000505207.5:ENST00000507845.5:ENST00000502404.5:ENST00000508635.5:ENST00000505307.5:ENST00000510129.5:ENST00000508476.5:ENST00000502563.5:ENST00000508238.5:ENST00000514755.5:ENST00000508974.5:ENST00000502690.5:ENST00000508818.5:ENST00000503418.5:ENST00000508249.1:ENST00000513098.5:ENST00000503282.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	64	2	1.94672	2.1355750000000002	2.32443	0.0544216	0.00781737	0.164972	0.0788482
chr8	30678743	30678840	3932236	0	-	0.391753	(0.378,0.408]	chr8	360178	8	UTR3	UTR3:EXON_MRNA	GSR	ENSG00000104687.14	ENST00000221130.11:ENST00000643653.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	81	2	1.53546	2.135515	2.73557	0.0265688	0.00360869	0.134088	0.0533855
chr7	10739298	10739398	3484173	0	-	0.52	(0.515,0.57]	chr7	325772	1774	INTRON	INTRON	MGC4859	ENSG00000283117.1	ENST00000634803.1	lncRNA	lncRNA	lncRNA	lncRNA	6	55	2	1.58964	2.13548	2.68132	0.0408	0.00324198	0.1451	0.0524329
chr21	44867134	44867233	7469062	0	-	0.494949	(0.476,0.515]	chr21	761251	11	INTRON	INTRON	PTTG1IP	ENSG00000183255.12	ENST00000397887.7:ENST00000445724.3:ENST00000330938.8:ENST00000494690.5:ENST00000480234.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	54	2	1.57103	2.13535	2.69967	0.0307896	0.0195838	0.143385	0.109483
chr11	73759747	73759847	4985780	0	-	0.34	(0.32,0.35]	chr11	470893	3	SS5_PROX	SS5_PROX:INTRON	RAB6A	ENSG00000175582.20	ENST00000310653.10:ENST00000336083.8:ENST00000541973.5:ENST00000536566.5:ENST00000541588.5:ENST00000545625.5:ENST00000540771.5:ENST00000537446.5:ENST00000400470.3:ENST00000541795.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	56	2	1.63843	2.135265	2.6321	0.0360919	0.0268	0.152563	0.123349
chr15	64557843	64557943	6045062	0	+	0.56	(0.515,0.57]	chr15	575696	549	INTRON	INTRON	ZNF609	ENSG00000180357.10	ENST00000326648.5:ENST00000558680.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	30	2	1.7074	2.13523	2.56306	0.0779432	0.0247751	0.196685	0.131869
chr22	24099680	24099780	7486073	0	+	0.52	(0.515,0.57]	chr22	763887	10	INTRON	INTRON	CABIN1	ENSG00000099991.18	ENST00000263119.10:ENST00000617531.4:ENST00000405822.6:ENST00000398319.6:ENST00000467937.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	30	2	1.7074	2.13523	2.56306	0.0779432	0.0247751	0.196685	0.131869
chr5	141575246	141575346	2739727	0	-	0.53	(0.515,0.57]	chr5	258094	1	SS3_PROX	SS3_PROX:INTRON	DIAPH1	ENSG00000131504.18	ENST00000647433.1:ENST00000389054.8:ENST00000518047.5:ENST00000647330.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	30	2	1.7074	2.13523	2.56306	0.0779432	0.0247751	0.196685	0.131869
chr7	16275578	16275677	3491992	0	-	0.525253	(0.515,0.57]	chr7	326197	162	INTRON	INTRON	CRPPA	ENSG00000214960.11	ENST00000407010.7:ENST00000399310.3:ENST00000676325.1:ENST00000675257.1:ENST00000674759.1	protein_coding	protein_coding	protein_coding	protein_coding	3	30	2	1.7074	2.13523	2.56306	0.0779432	0.0247751	0.196685	0.131869
chr9	34030111	34030211	4245662	0	-	0.52	(0.515,0.57]	chr9	390493	126	INTRON	INTRON	UBAP2	ENSG00000137073.24	ENST00000379238.7:ENST00000683659.1:ENST00000682239.1:ENST00000683140.1:ENST00000682209.1:ENST00000681980.1:ENST00000360802.6:ENST00000683252.1:ENST00000684158.1:ENST00000682914.1:ENST00000683717.1:ENST00000379239.9:ENST00000683084.1:ENST00000684754.1:ENST00000629575.2:ENST00000684298.1:ENST00000480885.5:ENST00000459988.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	30	2	1.7074	2.13523	2.56306	0.0779432	0.0247751	0.196685	0.131869
chr7	121052709	121052809	3394281	0	+	0.43	(0.408,0.44]	chr7	317696	8	INTRON	INTRON	CPED1	ENSG00000106034.18	ENST00000310396.10:ENST00000428526.5:ENST00000450913.6:ENST00000520801.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	130	2	1.85874	2.1351750000000003	2.41161	0.00680022	8.34334e-4	0.071184	0.0263691
chr5	31478289	31478388	2596456	0	-	0.373737	(0.35,0.378]	chr5	246625	57	INTRON	INTRON	DROSHA	ENSG00000113360.17	ENST00000344624.8:ENST00000511367.6:ENST00000513349.5:ENST00000512124.6:ENST00000510375.5:ENST00000512885.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	38	2	2.10859	2.135145	2.1617	0.0771502	0.0272722	0.196285	0.136494
chr17	50750837	50750937	6627307	0	+	0.41	(0.408,0.44]	chr17	647263	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	LUC7L3	ENSG00000108848.16	ENST00000393227.6:ENST00000505658.6:ENST00000240304.5:ENST00000508482.5:ENST00000504065.5:ENST00000509487.1:ENST00000511974.5:ENST00000513969.5:ENST00000503728.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	23	245	2	2.05506	2.135085	2.21511	6.15726e-4	5.22629e-4	0.0228962	0.0205035
chr8	1782141	1782239	3691169	0	+	0.55102	(0.515,0.57]	chr8	342602	17	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	CLN8	ENSG00000182372.10	ENST00000331222.6:ENST00000636934.1:ENST00000635970.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	67	2	1.73168	2.135065	2.53845	0.0119342	0.00632226	0.0962115	0.0687526
chr19	28491354	28491454	7166008	0	-	0.46	(0.44,0.476]	chr19	724189	231	INTRON	INTRON	ENSG00000283403:ENSG00000267243	ENSG00000283403.1:ENSG00000267243.6	ENST00000592347.5:ENST00000593065.5	lncRNA	lncRNA	lncRNA	lncRNA	6	64	2	1.88483	2.1350100000000003	2.38519	0.0149825	0.012193	0.107704	0.0910127
chr11	3758591	3758691	4894773	0	-	0.52	(0.515,0.57]	chr11	458876	48	INTRON	INTRON	NUP98	ENSG00000110713.17	ENST00000359171.8:ENST00000324932.12:ENST00000650171.1:ENST00000355260.7:ENST00000397004.8:ENST00000397007.8:ENST00000527104.5:ENST00000529379.1:ENST00000397013.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	66	2	1.90463	2.1349850000000004	2.36534	0.0141753	0.00404547	0.0959618	0.0578376
chr19	15326236	15326336	7147343	0	-	0.46	(0.44,0.476]	chr19	721965	459	INTRON	INTRON	BRD4	ENSG00000141867.19	ENST00000679869.1:ENST00000360016.9:ENST00000594841.5:ENST00000597315.5:ENST00000601941.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	94	2	1.98148	2.134975	2.28847	0.00692113	0.00431586	0.0718189	0.0599409
chr10	73047501	73047601	4647345	0	-	0.24	[0,0.28]	chr10	427517	4	SS3_PROX	SS3_PROX:INTRON	P4HA1	ENSG00000122884.13	ENST00000394890.7:ENST00000307116.6:ENST00000373008.6:ENST00000440381.5:ENST00000263556.3	protein_coding	protein_coding	protein_coding	protein_coding	5	69	2	1.49274	2.13495	2.77716	0.0592697	0.022039	0.189982	0.115395
chr2	149585022	149585119	1242951	0	-	0.257732	[0,0.28]	chr2	131933	24	INTRON	INTRON	MMADHC	ENSG00000168288.13	ENST00000303319.10:ENST00000428879.5:ENST00000422782.2	protein_coding	protein_coding	protein_coding	protein_coding	5	69	2	1.49274	2.13495	2.77716	0.0592697	0.022039	0.189982	0.115395
chr7	131426841	131426941	3417440	0	+	0.47	(0.44,0.476]	chr7	319231	118	INTRON	INTRON	MKLN1	ENSG00000128585.18	ENST00000421797.6:ENST00000352689.11:ENST00000494785.5:ENST00000458153.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	48	2	1.93084	2.134915	2.33899	0.0443175	0.0142027	0.162302	0.0959987
chr17	46180826	46180926	6784749	0	-	0.22	[0,0.28]	chr17	669245	82	INTRON	INTRON	KANSL1	ENSG00000120071.15	ENST00000574590.6:ENST00000572904.6:ENST00000432791.7:ENST00000575318.6:ENST00000638275.1:ENST00000262419.10:ENST00000648792.1:ENST00000639150.1:ENST00000571698.2:ENST00000639375.1:ENST00000638269.1:ENST00000639356.1:ENST00000574655.6:ENST00000639099.1:ENST00000638902.1:ENST00000576739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	9	125	2	1.72637	2.1348949999999998	2.54342	0.0130163	0.0105954	0.0992959	0.0861859
chr18	802527	802627	6940609	0	-	0.27	[0,0.28]	chr18	686527	45	INTRON	INTRON	YES1	ENSG00000176105.14	ENST00000584307.5:ENST00000314574.5:ENST00000577611.1:ENST00000581960.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	108	2	1.63983	2.1348399999999996	2.62985	0.0354096	0.00581422	0.137535	0.068681
chr4	39700686	39700786	1953017	0	+	0.36	(0.35,0.378]	chr4	195630	19	INTRON	INTRON	UBE2K	ENSG00000078140.14	ENST00000510934.5:ENST00000261427.10:ENST00000438068.6:ENST00000513231.5:ENST00000503368.5:ENST00000445950.2:ENST00000510719.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	78	2	1.78333	2.13478	2.48623	0.0148511	0.00938784	0.106937	0.0817766
chr12	68618048	68618148	5161276	0	+	0.38	(0.378,0.408]	chr12	488573	66	INTRON	INTRON	RAP1B	ENSG00000127314.18	ENST00000460800.5:ENST00000393436.9:ENST00000250559.14:ENST00000425247.6:ENST00000501412.2:ENST00000450214.6:ENST00000463493.5:ENST00000537460.5:ENST00000341355.9:ENST00000538283.5:ENST00000541167.5:ENST00000422358.6:ENST00000489473.6:ENST00000545270.5:ENST00000538980.5:ENST00000543393.5:ENST00000542018.5:ENST00000540209.5:ENST00000378985.7:ENST00000453560.6:ENST00000534899.5:ENST00000542145.5:ENST00000539091.5:ENST00000535492.5:ENST00000540781.5:ENST00000485252.6:ENST00000538877.5:ENST00000541386.5:ENST00000543697.5:ENST00000545720.6:ENST00000541216.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	15	169	2	1.69145	2.134705	2.57796	0.0112711	1.19999e-4	0.0884796	0.00938389
chr6	57095318	57095417	2878107	0	+	0.373737	(0.35,0.378]	chr6	273232	19	INTRON	INTRON	ZNF451	ENSG00000112200.17	ENST00000515290.5:ENST00000510483.5:ENST00000357489.7:ENST00000370708.8:ENST00000370702.5:ENST00000444273.6:ENST00000370711.9:ENST00000508603.5:ENST00000370706.9:ENST00000491832.6:ENST00000370710.10:ENST00000502749.1:ENST00000504603.1:ENST00000509071.5:ENST00000510989.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	13	143	2	1.79431	2.13469	2.47507	0.00481603	0.00180709	0.063849	0.0383374
chr21	37370918	37371017	7406262	0	+	0.353535	(0.35,0.378]	chr21	754846	24	INTRON	INTRON	DYRK1A	ENSG00000157540.22	ENST00000646523.1:ENST00000647425.1:ENST00000647188.2:ENST00000647504.1:ENST00000644942.1:ENST00000338785.8:ENST00000643624.1:ENST00000643551.1:ENST00000426672.6	protein_coding	protein_coding	protein_coding	protein_coding	7	78	2	1.63783	2.13468	2.63153	0.0250627	0.00562761	0.133086	0.0653997
chr9	130771854	130771954	4214443	0	+	0.56	(0.515,0.57]	chr9	386427	570	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000393293.4	protein_coding	protein_coding	protein_coding	protein_coding	5	48	2	1.75372	2.134665	2.51561	0.0386904	0.00635044	0.14279	0.0723103
chr17	50749844	50749922	6627296	0	+	0.282051	(0.28,0.32]	chr17	647256	1	INTRON	INTRON	LUC7L3	ENSG00000108848.16	ENST00000393227.6:ENST00000505658.6:ENST00000240304.5:ENST00000508482.5:ENST00000504065.5:ENST00000509487.1:ENST00000511974.5:ENST00000513969.5:ENST00000503728.1:ENST00000512549.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	73	2	1.91611	2.1346249999999998	2.35314	0.0539102	0.00539714	0.164153	0.066545000000000007
chr6	34343371	34343471	3084281	0	-	0.45	(0.44,0.476]	chr6	288633	10	INTRON	INTRON	NUDT3:RPS10-NUDT3	ENSG00000272325.2:ENSG00000270800.3	ENST00000607016.2:ENST00000639725.1:ENST00000639877.1:ENST00000605528.2	protein_coding	protein_coding	protein_coding	protein_coding	4	47	2	1.77101	2.13462	2.49823	0.0693975	0.00718224	0.184298	0.0756118
chr7	156683877	156683977	3685897	0	-	0.36	(0.35,0.378]	chr7	341973	62	UTR3	UTR3:EXON_MRNA	LMBR1	ENSG00000105983.23	ENST00000353442.10:ENST00000448926.5:ENST00000415428.5:ENST00000454132.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	98	2	1.47445	2.134585	2.79472	0.0223543	0.00303911	0.124687	0.0493883
chr7	157142834	157142934	3453978	0	+	0.42	(0.408,0.44]	chr7	322895	31	INTRON	INTRON	UBE3C	ENSG00000009335.18	ENST00000611269.4:ENST00000348165.10:ENST00000389103.4:ENST00000430750.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	108	2	2.11401	2.13454	2.15507	0.00618525	0.00230448	0.0677395	0.0440636
chr7	131417596	131417695	3417347	0	+	0.282828	(0.28,0.32]	chr7	319231	25	INTRON	INTRON	MKLN1	ENSG00000128585.18	ENST00000421797.6:ENST00000352689.11:ENST00000494785.5:ENST00000458153.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	70	2	1.69688	2.134415	2.57195	0.0331711	0.0219684	0.133994	0.123836
chr2	32222298	32222397	730360	0	+	0.40404	(0.378,0.408]	chr2	84231	17	UTR3	UTR3:EXON_MRNA	SLC30A6	ENSG00000152683.14	ENST00000357055.7:ENST00000435660.5:ENST00000282587.9:ENST00000406369.2	protein_coding	protein_coding	protein_coding	protein_coding	3	36	2	2.04292	2.13441	2.2259	0.0662381	0.0326035	0.181924	0.145164
chr5	131788518	131788618	2720660	0	-	0.39	(0.378,0.408]	chr5	255730	435	INTRON	INTRON	FNIP1	ENSG00000217128.13	ENST00000510461.6:ENST00000307954.12:ENST00000307968.11:ENST00000511848.1	protein_coding	protein_coding	protein_coding	protein_coding	3	36	2	2.04292	2.13441	2.2259	0.0662381	0.0326035	0.181924	0.145164
chr7	23396667	23396767	3502923	0	-	0.38	(0.378,0.408]	chr7	326881	21	INTRON	INTRON	IGF2BP3	ENSG00000136231.14	ENST00000258729.8:ENST00000421467.6:ENST00000468263.5:ENST00000479504.5:ENST00000466809.6:ENST00000491719.5:ENST00000465058.5:ENST00000469723.5:ENST00000474105.5:ENST00000476938.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	36	2	2.04292	2.13441	2.2259	0.0662381	0.0326035	0.181924	0.145164
chr7	157383174	157383274	3455779	0	+	0.5	(0.476,0.515]	chr7	323107	4	INTRON	INTRON	DNAJB6	ENSG00000105993.15	ENST00000429029.6:ENST00000262177.9:ENST00000417758.5:ENST00000459889.5:ENST00000443280.5:ENST00000634080.1:ENST00000468928.5:ENST00000465908.5:ENST00000487480.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	99	2	1.89682	2.13441	2.372	0.0158424	0.00103712	0.101453	0.0295413
chr8	97695072	97695171	3809573	0	+	0.40404	(0.378,0.408]	chr8	352866	35	INTRON	INTRON	MTDH	ENSG00000147649.10	ENST00000336273.8:ENST00000519934.5:ENST00000519293.1:ENST00000521933.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	36	2	2.04292	2.13441	2.2259	0.0662381	0.0326035	0.181924	0.145164
chrX	45048722	45048822	7650367	0	+	0.4	(0.378,0.408]	chrX	782770	107	INTRON	INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000675440.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000621147.5:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1:ENST00000675525.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	36	2	2.04292	2.13441	2.2259	0.0662381	0.0326035	0.181924	0.145164
chr9	37136736	37136836	4117820	0	+	0.45	(0.44,0.476]	chr9	375372	94	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000322831.6:ENST00000461038.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	29	307	2	2.03863	2.13431	2.22999	8.03199e-4	1.28519e-4	0.0262458	0.00976791
chr16	22504253	22504353	6322648	0	+	0.49	(0.476,0.515]	chr16	605439	121	INTRON	INTRON	NPIPB5	ENSG00000243716.11	ENST00000415654.5:ENST00000415833.6:ENST00000546168.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	17	178	2	1.53041	2.134305	2.7382	0.0108206	1.16053e-4	0.0920575	0.00972087
chr17	44877287	44877385	6781321	0	-	0.44898	(0.44,0.476]	chr17	668831	8	INTRON	INTRON	EFTUD2	ENSG00000108883.13	ENST00000426333.7:ENST00000592576.5:ENST00000591382.5:ENST00000402521.7:ENST00000587957.1:ENST00000593200.5:ENST00000588374.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	47	2	2.0776	2.1341900000000003	2.19078	0.0292951	0.0226089	0.141862	0.117489
chr7	66591260	66591359	3540107	0	-	0.444444	(0.44,0.476]	chr7	330280	23	INTRON	INTRON	RABGEF1P1	ENSG00000229180.8	ENST00000639011.1:ENST00000692299.1:ENST00000686269.1:ENST00000649635.1:ENST00000686397.1:ENST00000690339.1:ENST00000638711.1:ENST00000692179.1:ENST00000639153.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	4	47	2	2.0776	2.1341900000000003	2.19078	0.0292951	0.0226089	0.141862	0.117489
chr10	926431	926531	4542535	0	-	0.59	(0.57,1]	chr10	419310	16	INTRON	INTRON	LARP4B	ENSG00000107929.16	ENST00000316157.8:ENST00000690516.1:ENST00000476529.5:ENST00000406525.6:ENST00000481118.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	19	2	1.9042	2.134155	2.36411	0.0476976	0.0408868	0.161534	0.153019
chr10	21549822	21549921	4404565	0	+	0.59596	(0.57,1]	chr10	406427	81	INTRON	INTRON	MLLT10	ENSG00000078403.17	ENST00000651097.1:ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000377100.8:ENST00000377091.7:ENST00000650772.1:ENST00000651298.1:ENST00000652497.1:ENST00000495130.5:ENST00000377059.7:ENST00000621220.4:ENST00000476557.5:ENST00000462999.5:ENST00000430455.2:ENST00000479634.1:ENST00000480415.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	19	2	1.9042	2.134155	2.36411	0.0476976	0.0408868	0.161534	0.153019
chr11	57498875	57498963	4953629	0	-	0.579545	(0.57,1]	chr11	465036	7	INTRON	INTRON	SLC43A1	ENSG00000149150.9	ENST00000278426.8:ENST00000528450.5:ENST00000525764.5:ENST00000533515.5:ENST00000530159.5:ENST00000533066.5:ENST00000524995.5:ENST00000534105.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	19	2	1.9042	2.134155	2.36411	0.0476976	0.0408868	0.161534	0.153019
chr12	79821666	79821753	5375390	0	-	0.597701	(0.57,1]	chr12	512755	1	SS5_PROX	SS5_PROX:INTRON	PPP1R12A	ENSG00000058272.19	ENST00000261207.9:ENST00000450142.7:ENST00000437004.6:ENST00000546369.5:ENST00000550107.5:ENST00000547330.5:ENST00000550510.5	protein_coding	protein_coding	protein_coding	protein_coding	3	19	2	1.9042	2.134155	2.36411	0.0476976	0.0408868	0.161534	0.153019
chr16	4854744	4854842	6283366	0	+	0.602041	(0.57,1]	chr16	601542	12	INTRON	INTRON	UBN1	ENSG00000118900.15	ENST00000592120.5:ENST00000262376.11:ENST00000590769.5:ENST00000396658.8	protein_coding	protein_coding	protein_coding	protein_coding	3	19	2	1.9042	2.134155	2.36411	0.0476976	0.0408868	0.161534	0.153019
chr19	1860609	1860708	7113917	0	-	0.59596	(0.57,1]	chr19	714902	55	INTRON	INTRON	KLF16	ENSG00000129911.9	ENST00000250916.6:ENST00000541015.5:ENST00000617223.1:ENST00000592313.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	19	2	1.9042	2.134155	2.36411	0.0476976	0.0408868	0.161534	0.153019
chr19	28530404	28530504	7166399	0	-	0.41	(0.408,0.44]	chr19	724189	622	INTRON	INTRON	ENSG00000283403:ENSG00000267243	ENSG00000283403.1:ENSG00000267243.6	ENST00000592347.5:ENST00000593065.5	lncRNA	lncRNA	lncRNA	lncRNA	13	142	2	1.68814	2.134155	2.58017	0.0135006	1.84532e-4	0.0949306	0.0118345
chr21	5122797	5122894	7424433	0	-	0.618557	(0.57,1]	chr21	757271	2	INTRON	INTRON	ENSG00000280071	ENSG00000280071.4	ENST00000624810.3:ENST00000625036.3:ENST00000620528.5:ENST00000620015.4:ENST00000624120.3:ENST00000624648.3:ENST00000624748.2:ENST00000623810.2:ENST00000624714.3:ENST00000623390.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	19	2	1.9042	2.134155	2.36411	0.0476976	0.0408868	0.161534	0.153019
chr1	175955223	175955323	589172	0	-	0.37	(0.35,0.378]	chr1	70870	76	INTRON	INTRON	COP1	ENSG00000143207.21	ENST00000367669.8:ENST00000367667.5:ENST00000461830.6:ENST00000367666.5:ENST00000649803.1:ENST00000308769.12	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	70	2	1.86055	2.134125	2.4077	0.0168498	0.0122026	0.11068	0.0910127
chr11	85996325	85996425	5014095	0	-	0.33	(0.32,0.35]	chr11	472948	1	SS5_PROX	SS5_PROX:INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000630913.2:ENST00000529760.5:ENST00000528398.5:ENST00000356360.9:ENST00000529016.5:ENST00000526961.5:ENST00000530542.1	protein_coding	protein_coding	protein_coding	protein_coding	7	69	2	1.47118	2.134125	2.79707	0.0345598	0.0170923	0.148144	0.104099
chr6	53306889	53306989	3107768	0	-	0.39	(0.378,0.408]	chr6	291049	108	INTRON	INTRON	ELOVL5	ENSG00000012660.14	ENST00000370918.8:ENST00000542638.5:ENST00000304434.11:ENST00000485336.5:ENST00000465983.5:ENST00000486973.1:ENST00000370913.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	81	2	1.94906	2.134115	2.31917	0.023282	0.00252588	0.118176	0.0465056
chr22	21798711	21798811	7560694	0	-	0.5	(0.476,0.515]	chr22	773371	3	SS5_PROX	SS5_PROX:INTRON	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	33	346	2	2.04978	2.1340950000000003	2.21841	6.41048e-4	9.59777e-5	0.0231685	0.00823535
chr20	38430377	38430459	7342262	0	-	0.573171	(0.57,1]	chr20	748318	3	SS3_PROX	SS3_PROX:SS5_PROX:INTRON	SNHG17	ENSG00000196756.14	ENST00000654008.2:ENST00000658076.1:ENST00000662982.2:ENST00000456953.7:ENST00000654183.2:ENST00000663540.2:ENST00000651115.2:ENST00000660885.2:ENST00000662213.1:ENST00000665233.2:ENST00000666268.2:ENST00000665735.1:ENST00000660558.2:ENST00000691280.1:ENST00000658488.2:ENST00000688336.1:ENST00000668054.2:ENST00000690441.1:ENST00000655520.2:ENST00000687490.1:ENST00000664626.1:ENST00000658051.1:ENST00000668042.1:ENST00000686971.1:ENST00000663187.1:ENST00000657868.1:ENST00000663534.1:ENST00000689917.1:ENST00000664073.2:ENST00000653697.1:ENST00000656320.1:ENST00000686814.1:ENST00000417578.7:ENST00000654853.1:ENST00000436764.7:ENST00000668482.2:ENST00000671249.1:ENST00000655692.1:ENST00000693250.1:ENST00000691368.1:ENST00000693227.1:ENST00000690361.1:ENST00000670051.1:ENST00000667912.1:ENST00000693665.1:ENST00000665181.1:ENST00000687532.1:ENST00000691386.1:ENST00000693684.1:ENST00000666331.1:ENST00000669480.1:ENST00000658905.1:ENST00000661252.1:ENST00000669137.1:ENST00000688133.1:ENST00000689414.1:ENST00000691314.1:ENST00000669033.1:ENST00000686145.1:ENST00000653938.1:ENST00000663784.1:ENST00000665003.1:ENST00000656023.1:ENST00000692262.1:ENST00000414142.5:ENST00000670958.1:ENST00000657216.2:ENST00000664636.1:ENST00000657843.1:ENST00000423536.6:ENST00000666419.1:ENST00000413755.5	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	8	46	2	2.02689	2.134025	2.24116	0.00839052	0.00307807	0.0823837	0.0496321
chr1	47217269	47217367	445292	0	-	0.571429	(0.57,1]	chr1	53935	11	UTR3	UTR3:EXON_MRNA	TAL1	ENSG00000162367.12	ENST00000371884.6:ENST00000691006.1:ENST00000294339.3	protein_coding	protein_coding	protein_coding	protein_coding	7	41	2	1.71424	2.1340149999999998	2.55379	0.0279017	0.0015786	0.137011	0.0362091
chr5	131688846	131688945	2719652	0	-	0.242424	[0,0.28]	chr5	255672	93	INTRON	INTRON	FNIP1	ENSG00000217128.13	ENST00000510461.6:ENST00000307954.12:ENST00000307968.11:ENST00000511848.1	protein_coding	protein_coding	protein_coding	protein_coding	4	61	2	1.88025	2.13391	2.38757	0.0552962	0.029906	0.165463	0.142135
chr10	49959577	49959677	4432807	0	+	0.23	[0,0.28]	chr10	408699	7	INTRON	INTRON	TIMM23B:TIMM23B-AGAP6	ENSG00000204152.14:ENSG00000178440.8	ENST00000478381.5:ENST00000651259.3:ENST00000651763.1:ENST00000651208.1:ENST00000652716.1:ENST00000483296.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	94	2	1.80873	2.133885	2.45904	0.0234525	0.0137145	0.128429	0.0949306
chr2	131217488	131217588	865534	0	+	0.48	(0.476,0.515]	chr2	97184	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	PLEKHB2:POTEE	ENSG00000115762.17:ENSG00000188219.16	ENST00000404460.5:ENST00000683005.1	protein_coding	protein_coding	protein_coding	protein_coding	9	94	2	2.02162	2.13387	2.24612	0.00799949	0.00361279	0.0766625	0.055406
chr1	226152719	226152819	646712	0	-	0.42	(0.408,0.44]	chr1	76635	1	SS3_PROX	SS3_PROX:INTRON	ACBD3	ENSG00000182827.9	ENST00000366812.6	protein_coding	protein_coding	protein_coding	protein_coding	3	35	2	2.07919	2.13363	2.18807	0.0708044	0.0291499	0.184528	0.14147
chr11	108020539	108020639	4855845	0	+	0.44	(0.408,0.44]	chr11	452870	108	INTRON	INTRON	CUL5	ENSG00000166266.14	ENST00000393094.7:ENST00000532064.5:ENST00000526303.1:ENST00000531427.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	35	2	2.07919	2.13363	2.18807	0.0708044	0.0291499	0.184528	0.14147
chr5	180553671	180553771	2562459	0	+	0.42	(0.408,0.44]	chr5	245101	2	SS5_PROX	SS5_PROX:INTRON	CNOT6	ENSG00000113300.13	ENST00000261951.9:ENST00000393356.7:ENST00000618123.4:ENST00000502447.1:ENST00000504343.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	35	2	2.07919	2.13363	2.18807	0.0708044	0.0291499	0.184528	0.14147
chr7	131064938	131065038	3642246	0	-	0.44	(0.408,0.44]	chr7	338749	120	INTRON	INTRON	LINC-PINT	ENSG00000231721.7	ENST00000647388.1:ENST00000423414.5:ENST00000433079.5:ENST00000642156.1:ENST00000646429.1:ENST00000451786.5:ENST00000646587.1:ENST00000645248.1:ENST00000642602.1:ENST00000644804.1:ENST00000647288.1:ENST00000643135.1:ENST00000643855.1:ENST00000643874.1:ENST00000644188.1:ENST00000435523.5:ENST00000431189.1:ENST00000642483.1:ENST00000429901.2	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	3	35	2	2.07919	2.13363	2.18807	0.0708044	0.0291499	0.184528	0.14147
chr8	27448775	27448873	3721052	0	+	0.418367	(0.408,0.44]	chr8	345767	25	INTRON	INTRON	PTK2B	ENSG00000120899.18	ENST00000397501.5:ENST00000346049.10:ENST00000420218.3:ENST00000517339.5:ENST00000397497.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	35	2	2.07919	2.13363	2.18807	0.0708044	0.0291499	0.184528	0.14147
chrX	40723461	40723560	7806658	0	-	0.50505	(0.476,0.515]	chrX	796012	84	INTRON	INTRON	MED14	ENSG00000180182.11	ENST00000324817.6:ENST00000482034.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	129	2	1.54739	2.13362	2.71985	0.0222105	1.52058e-4	0.116092	0.0106137
chr1	45658428	45658527	440303	0	-	0.262626	[0,0.28]	chr1	53348	24	INTRON	INTRON	GPBP1L1	ENSG00000159592.11	ENST00000290795.7:ENST00000355105.8	protein_coding	protein_coding	protein_coding	protein_coding	12	147	2	1.32115	2.133615	2.94608	0.0355385	0.00272281	0.151407	0.0467523
chr5	90676658	90676758	2421600	0	+	0.37	(0.35,0.378]	chr5	232907	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ADGRV1	ENSG00000164199.18	ENST00000405460.9:ENST00000640403.1:ENST00000639473.1:ENST00000450321.2:ENST00000639431.1:ENST00000640779.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	70	2	1.90041	2.13359	2.36677	0.0145936	0.0139343	0.105992	0.0957526
chr21	39308452	39308552	7465491	0	-	0.37	(0.35,0.378]	chr21	760568	95	INTRON	INTRON	BRWD1	ENSG00000185658.14	ENST00000333229.6:ENST00000342449.8:ENST00000380800.7:ENST00000341322.4:ENST00000470108.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	95	2	2.06612	2.13356	2.201	0.0164908	0.00256708	0.102419	0.0466761
chr19	19520828	19520928	7036449	0	+	0.41	(0.408,0.44]	chr19	701528	41	INTRON	INTRON	NDUFA13	ENSG00000186010.19	ENST00000502506.6:ENST00000507754.9:ENST00000503283.5:ENST00000428459.6:ENST00000511584.2:ENST00000511180.4:ENST00000606722.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	65	2	2.04842	2.133495	2.21857	0.0209591	0.00797555	0.112046	0.0798772
chr1	27466803	27466903	406531	0	-	0.32	(0.28,0.32]	chr1	48986	375	INTRON	INTRON	WASF2	ENSG00000158195.11	ENST00000618852.5:ENST00000536657.1	protein_coding	protein_coding	protein_coding	protein_coding	4	53	2	1.81152	2.133485	2.45545	0.0438092	0.034446	0.14901	0.147767
chr3	37283653	37283750	1396161	0	+	0.474227	(0.44,0.476]	chr3	146339	10	INTRON	INTRON	GOLGA4	ENSG00000144674.17	ENST00000435830.6:ENST00000444882.5:ENST00000356847.8:ENST00000450863.6:ENST00000361924.7:ENST00000429018.5:ENST00000419177.3:ENST00000437131.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	133	2	1.98148	2.13345	2.28542	0.00431586	0.00133152	0.0599409	0.033444
chr11	9294758	9294842	4909235	0	-	0.25	[0,0.28]	chr11	460150	1	SS5_PROX	SS5_PROX:INTRON	TMEM41B	ENSG00000166471.11	ENST00000524543.5:ENST00000528080.6:ENST00000299596.8:ENST00000611268.4:ENST00000527813.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	50	2	2.05756	2.1334150000000003	2.20927	0.0794763	0.0352544	0.19979	0.150301
chr6	87232724	87232824	2914037	0	+	0.26	[0,0.28]	chr6	275311	89	INTRON	INTRON	ZNF292	ENSG00000188994.13	ENST00000369577.8:ENST00000518845.1:ENST00000339907.8:ENST00000496806.2	protein_coding	protein_coding	protein_coding	protein_coding	3	50	2	2.05756	2.1334150000000003	2.20927	0.0794763	0.0352544	0.19979	0.150301
chr6	140169182	140169282	2968147	0	+	0.27	[0,0.28]	chr6	279015	201	INTRON	INTRON	ENSG00000288714	ENSG00000288714.1	ENST00000683950.1	lncRNA	lncRNA	lncRNA	lncRNA	3	50	2	2.05756	2.1334150000000003	2.20927	0.0794763	0.0352544	0.19979	0.150301
chr12	49324722	49324814	5132845	0	+	0.402174	(0.378,0.408]	chr12	483901	3	INTRON	INTRON	TROAP	ENSG00000135451.13	ENST00000551245.5:ENST00000257909.8:ENST00000549891.5:ENST00000550346.5:ENST00000546735.5:ENST00000546776.5:ENST00000551192.5:ENST00000547807.5:ENST00000551567.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	112	2	1.56924	2.1334	2.69756	0.0267731	3.80456e-4	0.123349	0.0176313
chr22	38683841	38683939	7514285	0	+	0.306122	(0.28,0.32]	chr22	767589	1	UTR3	UTR3:EXON_MRNA	TOMM22	ENSG00000100216.6	ENST00000216034.6:ENST00000492561.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	116	2	2.04882	2.1334	2.21798	0.00901091	0.00796456	0.0851009	0.0764653
chr11	34055117	34055211	4767682	0	+	0.393617	(0.378,0.408]	chr11	440943	11	INTRON	INTRON	CAPRIN1	ENSG00000135387.21	ENST00000341394.9:ENST00000528856.5:ENST00000389645.7:ENST00000534042.5:ENST00000534825.5:ENST00000532820.5:ENST00000530820.5:ENST00000529307.1:ENST00000526494.5:ENST00000532755.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	15	159	2	1.79668	2.133345	2.47001	0.0037265	9.53492e-4	0.0561984	0.0282335
chr9	131176694	131176791	4216155	0	+	0.350515	(0.35,0.378]	chr9	386623	12	EXON_MRNA	EXON_MRNA:INTRON	NUP214	ENSG00000126883.19	ENST00000695497.1:ENST00000695498.1:ENST00000695496.1:ENST00000695495.1:ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000525980.5:ENST00000526346.5:ENST00000531929.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	86	2	1.35149	2.133325	2.91516	0.0544153	0.0013628	0.164972	0.0339121
chr6	31533894	31533993	3078755	0	-	0.40404	(0.378,0.408]	chr6	286739	11	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	DDX39B	ENSG00000198563.14	ENST00000458640.5:ENST00000462256.5:ENST00000376177.6:ENST00000484566.5:ENST00000396172.6:ENST00000417023.5:ENST00000482195.5:ENST00000431908.5:ENST00000481456.1:ENST00000427214.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	40	413	2	1.76103	2.133195	2.50536	9.29216e-4	7.63859e-5	0.0278746	0.0078038
chr7	22636111	22636211	3499734	0	-	0.41	(0.408,0.44]	chr7	326651	28	INTRON	INTRON	STEAP1B	ENSG00000105889.16	ENST00000442252.1:ENST00000650428.1:ENST00000649402.1	protein_coding	processed_transcript	protein_coding	processed_transcript	6	65	2	1.6546400000000001	2.13317	2.6117	0.0329965	0.00555224	0.145298	0.0648867
chr7	134008622	134008718	3425751	0	+	0.40625	(0.378,0.408]	chr7	319453	4	INTRON	INTRON	EXOC4	ENSG00000131558.15	ENST00000253861.5	protein_coding	protein_coding	protein_coding	protein_coding	8	82	2	1.34117	2.13313	2.92509	0.0505568	0.00167715	0.17538	0.0370386
chr12	49993440	49993535	5322338	0	-	0.484211	(0.476,0.515]	chr12	507330	4	INTRON	INTRON	RACGAP1	ENSG00000161800.13	ENST00000312377.10:ENST00000427314.6:ENST00000454520.6:ENST00000551016.5:ENST00000547905.5:ENST00000549342.1	protein_coding	protein_coding	protein_coding	protein_coding	4	42	2	1.86014	2.1331100000000003	2.40608	0.0425709	0.0277606	0.148082	0.137011
chr21	29045083	29045181	7390179	0	+	0.214286	[0,0.28]	chr21	753021	11	INTRON	INTRON	USP16	ENSG00000156256.15	ENST00000399975.7:ENST00000334352.8:ENST00000474835.5:ENST00000399976.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	60	2	1.62313	2.13311	2.64309	0.0605286	0.0308646	0.191883	0.13151
chr5	91382312	91382412	2674984	0	-	0.25	[0,0.28]	chr5	253126	1	SS5_PROX	SS5_PROX:INTRON	ARRDC3	ENSG00000113369.9	ENST00000265138.4:ENST00000507075.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	60	2	1.62313	2.13311	2.64309	0.0605286	0.0308646	0.191883	0.13151
chr11	5469140	5469234	4897913	0	-	0.468085	(0.44,0.476]	chr11	459194	8	EXON_PSEUDO	EXON_PSEUDO:INTRON	HBG2:ENSG00000239920:HBE1:OR51B5:OR51A10P	ENSG00000196565.15:ENSG00000239920.2:ENSG00000213931.7:ENSG00000167355.8:ENSG00000230484.2	ENST00000380252.6:ENST00000380259.7:ENST00000292896.3:ENST00000380237.5:ENST00000420726.6:ENST00000420465.6:ENST00000415970.6:ENST00000418729.1:ENST00000307165.4	protein_coding	protein_coding	protein_coding:unitary_pseudogene	protein_coding:non_stop_decay:nonsense_mediated_decay:processed_transcript:unitary_pseudogene	17	190	2	1.94639	2.133075	2.31976	0.00271426	4.2436e-4	0.0481064	0.0189958
chr15	72477212	72477311	6059189	0	+	0.363636	(0.35,0.378]	chr15	576852	18	INTRON	INTRON	ARIH1	ENSG00000166233.15	ENST00000379887.9:ENST00000570085.5:ENST00000564062.1:ENST00000567762.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	85	2	1.6344	2.132965	2.63153	0.0189573	0.00562761	0.118501	0.0653997
chr9	37150942	37151042	4117963	0	+	0.43	(0.408,0.44]	chr9	375382	31	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000322831.6:ENST00000461038.5:ENST00000488607.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	121	2	1.87904	2.1328650000000002	2.38669	0.011526	5.58744e-4	0.0889104	0.0215418
chr8	11828766	11828863	3702794	0	+	0.474227	(0.44,0.476]	chr8	343519	22	INTRON	INTRON	FDFT1	ENSG00000079459.13	ENST00000538689.4:ENST00000615631.4:ENST00000618539.4:ENST00000623368.3:ENST00000446331.6:ENST00000443614.6:ENST00000220584.9:ENST00000525607.5:ENST00000525283.5:ENST00000529464.5:ENST00000525900.5:ENST00000528812.5:ENST00000622850.2:ENST00000530664.5:ENST00000525954.5:ENST00000532266.5:ENST00000528643.5:ENST00000525777.5:ENST00000528729.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	98	2	2.06341	2.132835	2.20226	0.00871005	0.00238044	0.0788605	0.0449397
chr12	21515996	21516092	5094506	0	+	0.40625	(0.378,0.408]	chr12	481166	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	GOLT1B	ENSG00000111711.10	ENST00000535593.5:ENST00000229314.10:ENST00000542038.5:ENST00000540141.5:ENST00000545093.5:ENST00000539025.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	17	189	2	1.48864	2.132775	2.77691	0.0183012	3.3977e-5	0.108265	0.0046443
chr7	111485965	111486061	3623347	0	-	0.385417	(0.378,0.408]	chr7	337112	19	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000452895.5:ENST00000447215.5:ENST00000492938.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	96	2	1.89052	2.132755	2.37499	0.0148147	0.00259953	0.106702	0.0454353
chr16	87365985	87366084	6537650	0	-	0.454545	(0.44,0.476]	chr16	633426	53	INTRON	INTRON	FBXO31	ENSG00000103264.18	ENST00000311635.12:ENST00000565593.1:ENST00000618298.6:ENST00000636077.1:ENST00000561664.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	58	2	1.83899	2.13271	2.42643	0.0589734	0.0033369	0.167915	0.0528877
chr16	89894537	89894637	6422655	0	+	0.44	(0.408,0.44]	chr16	616767	1	SS3_PROX	SS3_PROX:INTRON	TCF25	ENSG00000141002.20	ENST00000640279.1:ENST00000263347.11:ENST00000263346.13:ENST00000568412.5:ENST00000566751.5:ENST00000562256.5:ENST00000568409.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	15	150	2	1.2224	2.13271	3.04302	0.037082	8.76557e-5	0.155878	0.0084151
chr17	31957164	31957264	6595879	0	+	0.44	(0.408,0.44]	chr17	641554	91	INTRON	INTRON	SUZ12	ENSG00000178691.11	ENST00000322652.10:ENST00000580398.1	protein_coding	protein_coding	protein_coding	protein_coding	14	146	2	1.98322	2.132705	2.28219	0.00215449	0.00173854	0.0417866	0.038529
chr1	100406122	100406222	173166	0	+	0.38	(0.378,0.408]	chr1	18824	149	INTRON	INTRON	CDC14A	ENSG00000079335.20	ENST00000646665.1:ENST00000644844.1:ENST00000635056.2:ENST00000647005.1:ENST00000647203.1:ENST00000644676.1:ENST00000361544.11:ENST00000370124.8:ENST00000336454.5:ENST00000644813.1:ENST00000455467.6:ENST00000646563.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	62	2	1.53546	2.132695	2.72993	0.0265688	0.0188736	0.134088	0.108861
chr11	9433846	9433946	4729928	0	+	0.33	(0.32,0.35]	chr11	437922	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	IPO7	ENSG00000205339.10	ENST00000379719.8	protein_coding	protein_coding	protein_coding	protein_coding	6	75	2	1.9182	2.13265	2.3471	0.0156413	0.0141462	0.103512	0.101393
chr6	68635370	68635460	2886317	0	+	0.611111	(0.57,1]	chr6	273713	2	UTR5	UTR5:EXON_MRNA	ADGRB3	ENSG00000135298.15	ENST00000370598.6:ENST00000684661.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	52	2	1.27375	2.13261	2.99147	0.0327336	6.75142e-4	0.145164	0.0237705
chr7	75525404	75525504	3559124	0	-	0.45	(0.44,0.476]	chr7	331603	1	SS5_PROX	SS5_PROX:INTRON	PMS2P3	ENSG00000127957.19	ENST00000693762.1:ENST00000394921.8:ENST00000430602.5:ENST00000418756.5:ENST00000437568.6:ENST00000533167.5:ENST00000691440.1:ENST00000422064.1:ENST00000438326.2	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript	5	56	2	1.71574	2.13259	2.54944	0.045256	0.00591346	0.149888	0.0694038
chr17	61791601	61791700	6808208	0	-	0.424242	(0.408,0.44]	chr17	672569	68	INTRON	INTRON	BRIP1	ENSG00000136492.10	ENST00000259008.7:ENST00000682755.1:ENST00000682453.1:ENST00000683039.1:ENST00000682989.1:ENST00000682589.1:ENST00000683235.1:ENST00000682477.1:ENST00000684584.1:ENST00000577598.5:ENST00000682066.1:ENST00000584322.2:ENST00000683381.1:ENST00000579028.2:ENST00000682611.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	75	2	1.76523	2.13253	2.49983	0.0174785	0.00713527	0.10482	0.0756118
chr11	769039	769137	4889644	0	-	0.428571	(0.408,0.44]	chr11	457802	18	UTR3	UTR3:EXON_MRNA:INTRON	GATD1	ENSG00000177225.17	ENST00000465313.6:ENST00000319863.13:ENST00000397472.6:ENST00000528309.5:ENST00000354286.8:ENST00000526325.5:ENST00000526650.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	13	145	2	2.08916	2.132465	2.17577	0.00269594	0.0018605	0.0479115	0.0390264
chr17	64480974	64481059	6815606	0	-	0.376471	(0.35,0.378]	chr17	673727	2	SS5_PROX	SS5_PROX:INTRON	POLG2	ENSG00000256525.8	ENST00000539111.7:ENST00000581355.1:ENST00000671755.1:ENST00000673460.1:ENST00000585104.2:ENST00000582501.5:ENST00000577506.5:ENST00000580490.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	51	2	1.81767	2.13234	2.44701	0.0640429	0.00900997	0.177882	0.0851009
chr2	101306134	101306234	1199524	0	-	0.36	(0.35,0.378]	chr2	128179	106	INTRON	INTRON	RNF149	ENSG00000163162.9	ENST00000424632.5:ENST00000295317.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	51	2	1.81767	2.13234	2.44701	0.0640429	0.00900997	0.177882	0.0851009
chr20	38086443	38086543	7269414	0	+	0.37	(0.35,0.378]	chr20	738725	4	INTRON	INTRON	RPRD1B	ENSG00000101413.12	ENST00000462548.6:ENST00000373433.9:ENST00000449186.2:ENST00000618318.1:ENST00000614670.1:ENST00000471511.1:ENST00000484683.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	14	165	2	1.90882	2.1323350000000003	2.3558500000000002	0.0048795	7.36654e-4	0.0607641	0.0247853
chr7	128540028	128540128	3407444	0	+	0.47	(0.44,0.476]	chr7	318333	59	INTRON	INTRON	ENSG00000280828	ENSG00000280828.1	ENST00000479267.2	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	6	53	2	1.40212	2.132215	2.86231	0.0524678	0.012214	0.178047	0.0910127
chr16	87851423	87851523	6538915	0	-	0.53	(0.515,0.57]	chr16	633638	3	SS5_PROX	SS5_PROX:INTRON	SLC7A5	ENSG00000103257.9	ENST00000261622.5:ENST00000565644.5	protein_coding	protein_coding	protein_coding	protein_coding	4	40	2	1.8707	2.132105	2.39351	0.0523213	0.0100431	0.160182	0.0881096
chr9	112292251	112292350	4317545	0	-	0.363636	(0.35,0.378]	chr9	397072	159	INTRON	INTRON	PTBP3	ENSG00000119314.16	ENST00000334318.10:ENST00000458258.5:ENST00000374257.6:ENST00000374255.6:ENST00000343327.6:ENST00000487997.1:ENST00000210227.4:ENST00000450374.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	51	2	2.09331	2.13205	2.17079	0.0315717	0.0225978	0.13151	0.124921
chr1	153920238	153920338	557740	0	-	0.5	(0.476,0.515]	chr1	66001	51	INTRON	INTRON	GATAD2B	ENSG00000143614.10	ENST00000368655.5:ENST00000634544.1:ENST00000634408.1:ENST00000634401.1:ENST00000634791.1:ENST00000637331.1:ENST00000636008.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	69	2	1.91525	2.13196	2.34867	0.0232571	0.00539703	0.127416	0.0644048
chr11	47526076	47526176	4950132	0	-	0.55	(0.515,0.57]	chr11	464246	14	INTRON	INTRON	CELF1	ENSG00000149187.19	ENST00000310513.10:ENST00000687097.1:ENST00000531165.5:ENST00000530151.5:ENST00000525841.5:ENST00000526419.1	protein_coding	protein_coding	protein_coding	protein_coding	5	49	2	1.67758	2.13191	2.58624	0.0471728	0.00526399	0.168737	0.0633874
chr6	156991234	156991334	3009305	0	+	0.52	(0.515,0.57]	chr6	281130	57	INTRON	INTRON	ARID1B	ENSG00000049618.24	ENST00000346085.10:ENST00000636930.2:ENST00000647938.1:ENST00000350026.10:ENST00000674298.1:ENST00000674190.1:ENST00000414678.7:ENST00000319584.11:ENST00000452544.2:ENST00000637887.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	49	2	1.67758	2.13191	2.58624	0.0471728	0.00526399	0.168737	0.0633874
chr7	152245843	152245940	3679370	0	-	0.350515	(0.35,0.378]	chr7	341574	19	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000681033.1:ENST00000679645.1:ENST00000684550.1:ENST00000489110.2:ENST00000683490.1:ENST00000680479.1:ENST00000683616.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	81	2	2.12112	2.1318799999999998	2.14264	0.0274795	0.00369765	0.123904	0.0561162
chr15	37030718	37030818	6143362	0	-	0.54	(0.515,0.57]	chr15	584824	800	INTRON	INTRON	MEIS2	ENSG00000134138.20	ENST00000338564.9:ENST00000561208.6:ENST00000397624.7:ENST00000340545.9:ENST00000314177.12:ENST00000560570.5:ENST00000559085.5:ENST00000557796.6:ENST00000397620.6:ENST00000424352.6:ENST00000559561.5:ENST00000607277.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	40	2	2.11313	2.1318200000000003	2.15051	0.0256725	0.0238113	0.133676	0.118889
chr1	10042978	10043078	19226	0	+	0.38	(0.378,0.408]	chr1	1838	89	INTRON	INTRON	UBE4B	ENSG00000130939.20	ENST00000672724.1:ENST00000253251.12:ENST00000343090.11:ENST00000377153.5	protein_coding	protein_coding	protein_coding	protein_coding	8	92	2	1.85455	2.13179	2.40903	0.0192049	0.00165739	0.108861	0.0376447
chr3	195278928	195279028	1894239	0	-	0.45	(0.44,0.476]	chr3	189532	43	UTR3	UTR3:EXON_MRNA	ACAP2	ENSG00000114331.16	ENST00000326793.11	protein_coding	protein_coding	protein_coding	protein_coding	5	56	2	1.66462	2.13175	2.59888	0.0520247	0.00487719	0.159508	0.0640618
chr22	49654124	49654224	7602629	0	-	0.42	(0.408,0.44]	chr22	778594	267	INTRON	INTRON	MIR3667HG	ENSG00000188511.13	ENST00000414287.5:ENST00000416411.1:ENST00000689875.1:ENST00000400023.5:ENST00000405854.5	lncRNA	lncRNA	lncRNA	lncRNA	13	142	2	1.66532	2.1317399999999997	2.59816	0.0147313	1.65762e-4	0.0983813	0.0111355
chr1	173865077	173865175	587063	0	-	0.55102	(0.515,0.57]	chr1	70637	13	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GAS5	ENSG00000234741.9	ENST00000651080.1:ENST00000687189.1:ENST00000689238.1:ENST00000687549.1:ENST00000687435.1:ENST00000687987.1:ENST00000686995.1:ENST00000689958.1:ENST00000687063.1:ENST00000689895.1:ENST00000690228.1:ENST00000688573.1:ENST00000412059.6:ENST00000685107.1:ENST00000449289.6:ENST00000691213.1:ENST00000436285.6:ENST00000436656.6:ENST00000422008.6:ENST00000691137.1:ENST00000450589.6:ENST00000448718.6:ENST00000693348.1:ENST00000690349.1:ENST00000690761.1:ENST00000687022.1:ENST00000686878.1:ENST00000430245.5:ENST00000422183.6:ENST00000442067.6:ENST00000693450.1:ENST00000690448.1:ENST00000416952.6:ENST00000688895.1:ENST00000687710.1:ENST00000693030.1:ENST00000692671.1:ENST00000688557.1:ENST00000456812.7:ENST00000431268.5:ENST00000455838.6:ENST00000449589.6:ENST00000444470.6:ENST00000693469.1:ENST00000685758.1:ENST00000458220.2:ENST00000687409.1:ENST00000688952.1:ENST00000689860.1:ENST00000686918.1:ENST00000691056.1:ENST00000689469.1:ENST00000685039.1:ENST00000414075.6:ENST00000692994.1:ENST00000691982.1:ENST00000690172.1:ENST00000686460.1:ENST00000691712.1:ENST00000685159.1:ENST00000685008.1:ENST00000452197.5:ENST00000454068.5:ENST00000650796.1:ENST00000451607.5:ENST00000693521.1:ENST00000690941.1:ENST00000693459.1:ENST00000686231.1:ENST00000684949.1:ENST00000425771.6	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	8	67	2	1.43349	2.131715	2.82994	0.0378274	0.00168661	0.141117	0.0381778
chr1	111164979	111165078	183979	0	+	0.232323	[0,0.28]	chr1	20432	33	INTRON	INTRON	CEPT1	ENSG00000134255.15	ENST00000545121.5:ENST00000498239.5:ENST00000357172.9:ENST00000460443.5:ENST00000478042.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	82	2	2.09899	2.131675	2.16436	0.0371453	0.0120935	0.139304	0.0962599
chrX	44878586	44878686	7648656	0	+	0.28	[0,0.28]	chrX	782726	42	INTRON	INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000675440.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000621147.5:ENST00000475233.1:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	82	2	2.09899	2.131675	2.16436	0.0371453	0.0120935	0.139304	0.0962599
chr21	10417805	10417905	7368172	0	+	0.46	(0.44,0.476]	chr21	751975	25	INTRON	INTRON	BAGE2	ENSG00000187172.15	ENST00000474011.5:ENST00000470054.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	10	107	2	1.65316	2.13164	2.61012	0.0192752	5.86746e-4	0.108861	0.0220073
chr6	143443464	143443564	3242297	0	-	0.47	(0.44,0.476]	chr6	301155	16	INTRON	INTRON	ADAT2	ENSG00000189007.16	ENST00000237283.9	protein_coding	protein_coding	protein_coding	protein_coding	19	205	2	1.75573	2.13163	2.50753	0.00373231	1.99806e-4	0.0562188	0.0129814
chr15	78890488	78890564	6069726	0	+	0.486842	(0.476,0.515]	chr15	578227	1	SS3_PROX	SS3_PROX:INTRON	MORF4L1	ENSG00000185787.15	ENST00000379535.8:ENST00000331268.9:ENST00000559930.5:ENST00000426013.7:ENST00000558746.5:ENST00000558893.5:ENST00000558830.5:ENST00000558522.5:ENST00000559345.5:ENST00000561171.5:ENST00000558502.5:ENST00000559258.5:ENST00000559690.5:ENST00000559158.5:ENST00000560422.5:ENST00000559244.5:ENST00000559751.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	15	116	2	1.35649	2.1315850000000003	2.90668	0.0182462	0.00164243	0.11547	0.0369207
chr7	129043211	129043310	3636464	0	-	0.484848	(0.476,0.515]	chr7	338148	11	INTRON	INTRON	TNPO3	ENSG00000064419.14	ENST00000627585.2:ENST00000265388.10:ENST00000471234.5:ENST00000482320.5:ENST00000471166.1	protein_coding	protein_coding	protein_coding	protein_coding	5	56	2	1.88582	2.131565	2.37731	0.0273268	0.0111793	0.123904	0.0937192
chr11	64764996	64765094	4965153	0	-	0.520408	(0.515,0.57]	chr11	467482	5	UTR3	UTR3:EXON_MRNA	SF1	ENSG00000168066.21	ENST00000334944.9:ENST00000227503.13:ENST00000377394.7:ENST00000448404.5:ENST00000377390.8:ENST00000377387.5:ENST00000681407.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	14	123	2	1.89343	2.131545	2.36966	0.00243616	0.00109329	0.0456604	0.0304174
chr6	110888285	110888380	2939079	0	+	0.568421	(0.515,0.57]	chr6	276772	1	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	AMD1	ENSG00000123505.19	ENST00000451850.6:ENST00000675380.1:ENST00000368882.8:ENST00000672937.2:ENST00000368885.8:ENST00000368877.9:ENST00000368876.2:ENST00000612642.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	117	2	1.51973	2.13143	2.74313	0.0185053	1.0436e-4	0.108861	0.00863456
chr20	437905	438002	7302975	0	-	0.443299	(0.44,0.476]	chr20	743433	26	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	TBC1D20	ENSG00000125875.15	ENST00000680792.1:ENST00000354200.5:ENST00000461304.5:ENST00000681539.1:ENST00000679741.1:ENST00000680990.1:ENST00000681129.1:ENST00000681414.1:ENST00000681441.1:ENST00000680088.1:ENST00000680284.1:ENST00000681777.1:ENST00000681389.1:ENST00000679895.1:ENST00000680491.1:ENST00000679451.1:ENST00000679953.1:ENST00000461188.6:ENST00000680815.1:ENST00000680521.1:ENST00000681193.1:ENST00000681551.1:ENST00000679973.1:ENST00000680911.1:ENST00000679944.1:ENST00000681636.1:ENST00000680106.1:ENST00000494633.1:ENST00000680050.1:ENST00000681742.1:ENST00000680515.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	98	2	2.03286	2.131385	2.22991	0.00977911	0.00208483	0.0835427	0.0424672
chr17	44063200	44063300	6778360	0	-	0.43	(0.408,0.44]	chr17	668123	226	INTRON	INTRON	LSM12	ENSG00000161654.10	ENST00000591247.6:ENST00000293406.8:ENST00000585388.2	protein_coding	protein_coding	protein_coding	protein_coding	7	78	2	1.62122	2.131245	2.64127	0.0394247	0.00125199	0.143072	0.0328543
chr1	39850461	39850561	427936	0	-	0.43	(0.408,0.44]	chr1	52000	2	SS3_PROX	SS3_PROX:INTRON	TRIT1	ENSG00000043514.17	ENST00000316891.10:ENST00000648678.1:ENST00000537440.5:ENST00000372818.5:ENST00000462797.5:ENST00000441669.6:ENST00000495175.6:ENST00000491865.5:ENST00000541099.5:ENST00000492612.6:ENST00000489945.5:ENST00000486825.6:ENST00000469476.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	47	2	1.81572	2.13123	2.44674	0.0626779	0.00868283	0.175915	0.0842798
chr22	19987688	19987788	7556533	0	-	0.62	(0.57,1]	chr22	772667	6	INTRON	INTRON	ARVCF	ENSG00000099889.14	ENST00000263207.8:ENST00000406259.1:ENST00000473551.5:ENST00000467828.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	30	2	2.09207	2.131165	2.17026	0.0220522	0.0121228	0.123836	0.090965
chr19	15322537	15322637	7147306	0	-	0.51	(0.476,0.515]	chr19	721965	422	INTRON	INTRON	BRD4	ENSG00000141867.19	ENST00000679869.1:ENST00000360016.9:ENST00000594841.5:ENST00000597315.5:ENST00000601941.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	47	2	1.72558	2.131145	2.53671	0.0767648	0.00624027	0.196164	0.0718843
chr7	107144421	107144520	3378169	0	+	0.424242	(0.408,0.44]	chr7	316270	31	INTRON	INTRON	PRKAR2B	ENSG00000005249.13	ENST00000265717.5:ENST00000488792.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	133	2	1.68203	2.1311	2.58017	0.0175685	1.84532e-4	0.105143	0.0118345
chr6	147327676	147327776	2989958	0	+	0.46	(0.44,0.476]	chr6	280095	4	SS5_PROX	SS5_PROX:INTRON	STXBP5	ENSG00000164506.15	ENST00000321680.11:ENST00000367481.7:ENST00000367480.7:ENST00000367475.6:ENST00000392291.2	protein_coding	protein_coding	protein_coding	protein_coding	3	35	2	1.77101	2.131065	2.49112	0.0693975	0.0315968	0.184298	0.144381
chr3	6602542	6602642	1357269	0	+	0.29	(0.28,0.32]	chr3	142522	181	INTRON	INTRON	ENSG00000189229	ENSG00000189229.12	ENST00000433639.1:ENST00000655754.1:ENST00000658468.1:ENST00000669512.1:ENST00000667028.1:ENST00000655541.1:ENST00000668643.1:ENST00000671568.1:ENST00000671036.1:ENST00000669798.1:ENST00000655753.1:ENST00000655856.1:ENST00000658398.1:ENST00000661518.1:ENST00000661279.1:ENST00000655495.1:ENST00000663041.1:ENST00000659827.1:ENST00000667716.1:ENST00000668416.1:ENST00000658133.1:ENST00000342990.4:ENST00000660054.1:ENST00000671370.1	lncRNA	lncRNA	lncRNA	lncRNA	4	61	2	1.96475	2.130915	2.29708	0.0428385	0.0195087	0.162255	0.109483
chr17	67730801	67730899	6667543	0	+	0.428571	(0.408,0.44]	chr17	650482	38	INTRON	INTRON	NOL11	ENSG00000130935.10	ENST00000253247.9:ENST00000581375.5:ENST00000580833.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	47	2	2.11447	2.1308949999999998	2.14732	0.0285207	0.0237354	0.129075	0.12666
chr22	38489458	38489557	7587913	0	-	0.363636	(0.35,0.378]	chr22	776723	1	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	DDX17	ENSG00000100201.23	ENST00000403230.3:ENST00000396821.8:ENST00000216019.11:ENST00000475004.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	118	1355	2	1.92418	2.130865	2.33755	4.08317e-4	1.0242e-5	0.0185763	0.00235018
chr14	103136385	103136481	5825458	0	+	0.46875	(0.44,0.476]	chr14	552715	5	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TNFAIP2	ENSG00000185215.11	ENST00000333007.8:ENST00000560869.6:ENST00000559255.1:ENST00000561217.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	80	2	2.08211	2.130815	2.17952	0.0130715	0.00551887	0.0996047	0.0648867
chr11	9578874	9578972	4730851	0	+	0.316327	(0.28,0.32]	chr11	438106	11	EXON_MRNA	EXON_MRNA:INTRON	WEE1	ENSG00000166483.12	ENST00000680141.1:ENST00000450114.7:ENST00000299613.10:ENST00000524549.1:ENST00000681684.1:ENST00000524612.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	142	2	1.3062	2.130795	2.95539	0.0434142	6.48314e-4	0.162255	0.0232863
chr16	22498488	22498588	6322590	0	+	0.39	(0.378,0.408]	chr16	605439	63	INTRON	INTRON	NPIPB5	ENSG00000243716.11	ENST00000415654.5:ENST00000415833.6:ENST00000546168.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	99	2	1.57136	2.130795	2.69023	0.0233757	0.00140735	0.128037	0.0340865
chr7	140465416	140465515	3661486	0	-	0.464646	(0.44,0.476]	chr7	339916	48	INTRON	INTRON	MKRN1	ENSG00000133606.11	ENST00000255977.7:ENST00000475010.5:ENST00000495305.5:ENST00000474576.5:ENST00000480552.5:ENST00000496169.5:ENST00000443720.6:ENST00000471104.5:ENST00000467513.5:ENST00000494939.1:ENST00000498535.1:ENST00000473444.1:ENST00000475180.5:ENST00000481705.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	101	2	1.8752	2.1307799999999997	2.38636	0.00504991	0.0047296	0.0646039	0.0600445
chr16	89403860	89403960	6542727	0	-	0.4	(0.378,0.408]	chr16	634253	1	SS3_PROX	SS3_PROX:INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000647238.1:ENST00000644045.1:ENST00000643147.1:ENST00000644139.1:ENST00000568512.6:ENST00000566973.1:ENST00000562211.2:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	67	2	1.39189	2.13072	2.86955	0.0751636	0.00159247	0.193731	0.0367961
chr11	66653470	66653570	4811185	0	+	0.49	(0.476,0.515]	chr11	447918	12	INTRON	INTRON	RBM4	ENSG00000173933.21	ENST00000396053.9	protein_coding	protein_coding	protein_coding	protein_coding	4	47	2	1.99341	2.13065	2.26789	0.037389	0.0176567	0.155878	0.105233
chr17	22147164	22147264	6579135	0	+	0.34	(0.32,0.35]	chr17	639556	559	INTRON	INTRON	UBBP4	ENSG00000263563.7	ENST00000648259.1:ENST00000688301.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	5	67	2	1.88909	2.13054	2.37199	0.0553737	0.00465833	0.165463	0.0629753
chr13	95171327	95171426	5638563	0	-	0.414141	(0.408,0.44]	chr13	537099	3	INTRON	INTRON	ABCC4	ENSG00000125257.16	ENST00000645237.2:ENST00000643051.1:ENST00000643842.1:ENST00000646439.1:ENST00000643816.1:ENST00000536256.3:ENST00000643556.1:ENST00000629385.1:ENST00000642524.1:ENST00000645532.1:ENST00000644471.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	77	2	2.00228	2.13051	2.25874	0.0389732	0.00181031	0.143072	0.0393822
chr11	118573519	118573619	4873091	0	+	0.3	(0.28,0.32]	chr11	455169	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	ARCN1	ENSG00000095139.15	ENST00000392859.7:ENST00000264028.5:ENST00000359415.8:ENST00000534182.2	protein_coding	protein_coding	protein_coding	protein_coding	3	46	2	1.96376	2.1305	2.29724	0.0554156	0.0480066	0.18407	0.153019
chr8	29061684	29061784	3726590	0	+	0.49	(0.476,0.515]	chr8	346339	44	INTRON	INTRON	HMBOX1	ENSG00000147421.18	ENST00000522468.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	16	169	2	2.09217	2.13048	2.16879	0.00158904	9.83317e-4	0.0364097	0.0288314
chr3	186940752	186940851	1586275	0	+	0.323232	(0.32,0.35]	chr3	164314	90	INTRON	INTRON	ST6GAL1	ENSG00000073849.16	ENST00000676786.1:ENST00000463542.1:ENST00000169298.8:ENST00000457772.6:ENST00000455441.5:ENST00000427315.5:ENST00000677292.1:ENST00000468614.1:ENST00000458216.5:ENST00000430309.5:ENST00000417392.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	101	2	1.49732	2.13036	2.7634	0.0455974	8.19858e-4	0.149888	0.026165
chr11	27495400	27495499	4937433	0	-	0.474747	(0.44,0.476]	chr11	462408	11	UTR3	UTR3:EXON_MRNA	LIN7C	ENSG00000148943.12	ENST00000278193.7:ENST00000524596.1	protein_coding	protein_coding	protein_coding	protein_coding	14	149	2	1.79505	2.13028	2.46551	0.00692643	3.60069e-4	0.0718189	0.0169207
chr11	34443540	34443639	4768695	0	+	0.353535	(0.35,0.378]	chr11	441209	41	INTRON	INTRON	CAT	ENSG00000121691.7	ENST00000241052.5	protein_coding	protein_coding	protein_coding	protein_coding	5	52	2	1.59505	2.13026	2.66547	0.040425	0.0233639	0.161534	0.118323
chr11	58600549	58600648	4793958	0	+	0.323232	(0.32,0.35]	chr11	443838	153	INTRON	INTRON	ZFP91	ENSG00000186660.15	ENST00000316059.7	protein_coding	protein_coding	protein_coding	protein_coding	4	49	2	1.88255	2.130245	2.37794	0.0498601	0.0269187	0.156383	0.135288
chr7	139389222	139389321	3437889	0	+	0.343434	(0.32,0.35]	chr7	320340	127	INTRON	INTRON	LUC7L2:FMC1-LUC7L2	ENSG00000146963.18:ENSG00000269955.2	ENST00000541170.7:ENST00000541515.3:ENST00000608368.5:ENST00000619796.4:ENST00000354926.9:ENST00000456182.5:ENST00000263545.7:ENST00000463912.5:ENST00000498518.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	49	2	1.88255	2.130245	2.37794	0.0498601	0.0269187	0.156383	0.135288
chr8	11807157	11807255	3702566	0	+	0.438776	(0.408,0.44]	chr8	343487	33	INTRON	INTRON	FDFT1	ENSG00000079459.13	ENST00000538689.4:ENST00000615631.4:ENST00000618539.4:ENST00000530337.5:ENST00000623368.3:ENST00000446331.6:ENST00000443614.6:ENST00000220584.9:ENST00000525607.5:ENST00000525283.5:ENST00000529464.5:ENST00000525900.5:ENST00000528812.5:ENST00000622850.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	24	227	2	1.80227	2.130235	2.4582	0.00124508	5.79177e-4	0.032845	0.022329
chr11	47273326	47273426	4788273	0	+	0.46	(0.44,0.476]	chr11	442980	1	SS3_PROX	SS3_PROX:INTRON	MADD	ENSG00000110514.19	ENST00000453571.5:ENST00000342922.8:ENST00000428807.5:ENST00000402799.5:ENST00000406482.5:ENST00000349238.7:ENST00000311027.9:ENST00000407859.7:ENST00000534808.1:ENST00000395344.7:ENST00000444117.5:ENST00000395336.7:ENST00000402192.6:ENST00000526603.5:ENST00000422579.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	36	2	1.96602	2.130135	2.29425	0.0518406	0.0426807	0.176696	0.148082
chr11	120369120	120369220	4876527	0	+	0.46	(0.44,0.476]	chr11	455798	315	INTRON	INTRON	ARHGEF12	ENSG00000196914.9	ENST00000397843.7:ENST00000356641.7	protein_coding	protein_coding	protein_coding	protein_coding	6	65	2	1.76195	2.13009	2.49823	0.0252608	0.00718224	0.12011	0.0756118
chr20	46061644	46061738	7346176	0	-	0.329787	(0.32,0.35]	chr20	748987	8	UTR3	UTR3:EXON_MRNA	NCOA5	ENSG00000124160.12	ENST00000290231.11	protein_coding	protein_coding	protein_coding	protein_coding	5	67	2	1.72898	2.130025	2.53107	0.0425433	0.00860484	0.161951	0.0784134
chr22	21856225	21856325	7561272	0	-	0.48	(0.476,0.515]	chr22	773388	480	INTRON	INTRON	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	6	67	2	2.09697	2.130015	2.16306	0.0136924	0.00973468	0.0949306	0.0877284
chr21	21220846	21220946	7381218	0	+	0.34	(0.32,0.35]	chr21	752602	2219	INTRON	INTRON	NCAM2	ENSG00000154654.15	ENST00000400546.6	protein_coding	protein_coding	protein_coding	protein_coding	4	56	2	1.95271	2.13001	2.30731	0.0431213	0.0176772	0.162255	0.10525
chr11	68463822	68463922	4817363	0	+	0.52	(0.515,0.57]	chr11	448907	26	INTRON	INTRON	PPP6R3	ENSG00000110075.15	ENST00000530427.5:ENST00000528635.5:ENST00000529907.5:ENST00000533127.5:ENST00000534534.5:ENST00000529344.5:ENST00000524845.5:ENST00000393800.7:ENST00000265637.8:ENST00000524904.5:ENST00000393801.7:ENST00000265636.9:ENST00000529710.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	48	2	1.63184	2.1300049999999997	2.62817	0.0545832	0.004048	0.165292	0.0578376
chr19	2234620	2234715	7115732	0	-	0.515789	(0.515,0.57]	chr19	715291	5	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	PLEKHJ1	ENSG00000104886.12	ENST00000587394.6:ENST00000587962.6:ENST00000326631.7:ENST00000591099.6:ENST00000589097.6:ENST00000588450.1:ENST00000589791.5:ENST00000586608.3:ENST00000585423.5:ENST00000586497.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	48	2	1.63184	2.1300049999999997	2.62817	0.0545832	0.004048	0.165292	0.0578376
chr19	53182299	53182396	7211168	0	-	0.515464	(0.515,0.57]	chr19	731966	18	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	ZNF665	ENSG00000197497.11	ENST00000396424.5:ENST00000600412.1:ENST00000650736.1:ENST00000597544.5:ENST00000596373.1:ENST00000598440.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	48	2	1.63184	2.1300049999999997	2.62817	0.0545832	0.004048	0.165292	0.0578376
chr1	207693752	207693852	304438	0	+	0.23	[0,0.28]	chr1	35014	94	INTRON	INTRON	CR1L	ENSG00000197721.17	ENST00000508064.7:ENST00000530905.1:ENST00000294997.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	70	2	1.95356	2.129985	2.30641	0.0463152	0.0213596	0.166231	0.113755
chr9	37156039	37156138	4118014	0	+	0.313131	(0.28,0.32]	chr9	375382	82	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000322831.6:ENST00000461038.5:ENST00000488607.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	153	2	2.08592	2.129985	2.17405	0.00693492	0.00226132	0.0718189	0.0437013
chr3	37310124	37310223	1396433	0	+	0.373737	(0.35,0.378]	chr3	146385	74	INTRON	INTRON	GOLGA4	ENSG00000144674.17	ENST00000435830.6:ENST00000444882.5:ENST00000356847.8:ENST00000450863.6:ENST00000361924.7:ENST00000429018.5:ENST00000437131.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	74	2	2.10109	2.12993	2.15877	0.014685	0.0102036	0.0983813	0.089002
chr8	55947923	55948023	3755021	0	+	0.41	(0.408,0.44]	chr8	349272	2	SS5_PROX	SS5_PROX:INTRON	LYN	ENSG00000254087.8	ENST00000519728.6:ENST00000520220.6:ENST00000520050.1	protein_coding	protein_coding	protein_coding	protein_coding	10	108	2	1.78379	2.12992	2.47605	0.0120158	0.00116417	0.0902542	0.0314524
chr17	56898614	56898700	6798986	0	-	0.383721	(0.378,0.408]	chr17	671254	1	SS5_PROX	SS5_PROX:INTRON	TRIM25	ENSG00000121060.19	ENST00000648772.1:ENST00000682766.1:ENST00000316881.9:ENST00000537230.3:ENST00000572021.6:ENST00000570473.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	70	2	1.90812	2.1299	2.35168	0.0264295	0.0046563	0.122506	0.0629753
chr7	2373869	2373963	3269829	0	+	0.638298	(0.57,1]	chr7	303855	9	EXON_MRNA	EXON_MRNA:INTRON	EIF3B	ENSG00000106263.19	ENST00000360876.9:ENST00000397011.2:ENST00000475415.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	55	2	1.75814	2.12989	2.50164	0.0104317	8.10609e-4	0.0855102	0.0259609
chr3	179201540	179201640	1566337	0	+	0.24	[0,0.28]	chr3	161919	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	PIK3CA	ENSG00000121879.6	ENST00000263967.4:ENST00000643187.1:ENST00000675786.1:ENST00000675467.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	82	2	1.62991	2.12988	2.62985	0.0671202	0.00581422	0.183051	0.068681
chr16	85577741	85577841	6415609	0	+	0.6	(0.57,1]	chr16	615470	210	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	18	98	2	2.06517	2.12975	2.19433	7.47029e-4	4.31185e-4	0.0250452	0.0190829
chr12	121310511	121310610	5436745	0	-	0.414141	(0.408,0.44]	chr12	519847	1	INTRON	INTRON	ANAPC5	ENSG00000089053.13	ENST00000261819.8:ENST00000535641.5:ENST00000541887.5:ENST00000534976.5:ENST00000441917.6:ENST00000539079.5:ENST00000544314.5:ENST00000535482.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	89	2	1.58622	2.129735	2.67325	0.0291748	0.00143252	0.141552	0.0340925
chr11	114448279	114448379	4869058	0	+	0.33	(0.32,0.35]	chr11	454417	4	SS5_PROX	SS5_PROX:INTRON	REXO2	ENSG00000076043.11	ENST00000265881.10:ENST00000539754.5:ENST00000539275.5:ENST00000543131.5:ENST00000538198.5:ENST00000539119.5:ENST00000544827.5:ENST00000546316.5:ENST00000539788.5:ENST00000538403.5:ENST00000538791.3:ENST00000540492.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	40	2	1.95271	2.12972	2.30673	0.0584434	0.0431213	0.167723	0.162255
chr8	31118772	31118869	3728803	0	+	0.298969	(0.28,0.32]	chr8	346634	19	INTRON	INTRON	WRN	ENSG00000165392.11	ENST00000650667.1:ENST00000298139.7:ENST00000521620.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	82	2	1.72287	2.1296749999999998	2.53648	0.0286502	0.00925866	0.139456	0.0817766
chr1	35188590	35188668	420557	0	-	0.487179	(0.476,0.515]	chr1	50671	1	SS5_PROX	SS5_PROX:INTRON	SFPQ	ENSG00000116560.12	ENST00000470472.5:ENST00000696553.1:ENST00000357214.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	30	315	2	1.98099	2.12965	2.27831	5.98621e-4	2.58917e-4	0.0226059	0.014326
chr14	101792562	101792661	5818805	0	+	0.323232	(0.32,0.35]	chr14	551829	28	INTRON	INTRON	PPP2R5C	ENSG00000078304.20	ENST00000694906.1:ENST00000422945.6:ENST00000554442.5:ENST00000556068.5:ENST00000328724.9:ENST00000554504.1:ENST00000553890.1:ENST00000553554.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	92	2	1.8526	2.12962	2.40664	0.0332438	0.00189533	0.134145	0.0402736
chr1	50894587	50894687	451599	0	-	0.33	(0.32,0.35]	chr1	54267	362	INTRON	INTRON	FAF1	ENSG00000185104.21	ENST00000396153.7:ENST00000487898.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	40	2	1.81328	2.12954	2.4458	0.0615716	0.0425977	0.193423	0.148082
chr11	57720907	57721007	4792700	0	+	0.35	(0.32,0.35]	chr11	443656	77	INTRON	INTRON	ENSG00000288534:TMX2	ENSG00000288534.1:ENSG00000213593.10	ENST00000673781.1:ENST00000673810.1:ENST00000278422.9:ENST00000674116.1:ENST00000524972.5:ENST00000378312.8:ENST00000530114.5:ENST00000525035.5:ENST00000529403.1:ENST00000528110.5:ENST00000533602.5:ENST00000528042.1:ENST00000674060.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	40	2	1.81328	2.12954	2.4458	0.0615716	0.0425977	0.193423	0.148082
chr13	41015827	41015927	5577496	0	-	0.33	(0.32,0.35]	chr13	533202	226	INTRON	INTRON	ELF1	ENSG00000120690.16	ENST00000239882.7:ENST00000405737.2	protein_coding	protein_coding	protein_coding	protein_coding	3	40	2	1.81328	2.12954	2.4458	0.0615716	0.0425977	0.193423	0.148082
chr15	68160057	68160156	6057021	0	+	0.343434	(0.32,0.35]	chr15	576596	60	INTRON	INTRON	PIAS1	ENSG00000033800.14	ENST00000249636.11:ENST00000545237.1	protein_coding	protein_coding	protein_coding	protein_coding	3	40	2	1.81328	2.12954	2.4458	0.0615716	0.0425977	0.193423	0.148082
chr17	49755924	49756023	6794074	0	-	0.434343	(0.408,0.44]	chr17	670428	88	INTRON	INTRON	FAM117A	ENSG00000121104.8	ENST00000240364.7:ENST00000513602.5:ENST00000503855.5:ENST00000514018.5:ENST00000505159.5:ENST00000506156.1:ENST00000509347.5:ENST00000503720.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	72	2	1.43388	2.129495	2.82511	0.0509486	0.00189528	0.157123	0.0402736
chr6	158563029	158563129	3021628	0	+	0.45	(0.44,0.476]	chr6	281792	24	INTRON	INTRON	TMEM181	ENSG00000146433.10	ENST00000367090.4:ENST00000684151.1	protein_coding	protein_coding	protein_coding	protein_coding	5	56	2	2.08277	2.129485	2.1762	0.0309998	0.0092251	0.13151	0.0855292
chr5	149513806	149513903	2750697	0	-	0.546392	(0.515,0.57]	chr5	259043	2	INTRON	INTRON	CSNK1A1	ENSG00000113712.19	ENST00000261798.10:ENST00000377843.8:ENST00000657001.1:ENST00000515768.6:ENST00000606719.6:ENST00000657462.1:ENST00000661952.1:ENST00000504676.5:ENST00000515435.5:ENST00000662268.1:ENST00000657706.1:ENST00000606299.2:ENST00000670598.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	61	2	1.82113	2.12948	2.43783	0.0118311	0.00916404	0.0962115	0.0812949
chr7	99563564	99563663	3362743	0	+	0.484848	(0.476,0.515]	chr7	314142	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ZNF655	ENSG00000197343.11	ENST00000320583.9:ENST00000626122.2:ENST00000467680.5:ENST00000357864.6:ENST00000452314.5:ENST00000416144.5:ENST00000454654.5:ENST00000412636.5:ENST00000252713.9:ENST00000449244.5:ENST00000423973.5:ENST00000493947.5:ENST00000425063.5:ENST00000493277.5:ENST00000422422.5:ENST00000422164.5:ENST00000427931.5:ENST00000422647.5:ENST00000424881.5:ENST00000440391.5:ENST00000394163.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	118	2	2.11109	2.12947	2.14785	0.00438713	0.00197135	0.0585064	0.0411469
chr22	21507348	21507448	7560164	0	-	0.43	(0.408,0.44]	chr22	773318	149	INTRON	INTRON	PI4KAP2	ENSG00000183506.17	ENST00000450651.5:ENST00000467443.5:ENST00000479693.1:ENST00000476537.1:ENST00000491562.5	transcribed_unitary_pseudogene	retained_intron	transcribed_unitary_pseudogene	retained_intron:processed_transcript	12	100	2	1.22006	2.1294399999999998	3.03882	0.0414473	9.66897e-4	0.161692	0.0282401
chr10	92878476	92878576	4491916	0	+	0.49	(0.476,0.515]	chr10	413705	295	INTRON	INTRON	EXOC6	ENSG00000138190.17	ENST00000671701.1:ENST00000672817.1:ENST00000371552.8:ENST00000443748.6:ENST00000371543.5:ENST00000260762.10	protein_coding	protein_coding	protein_coding	protein_coding	5	56	2	1.80284	2.12941	2.45598	0.033161	0.00945755	0.145899	0.0817766
chr7	73445793	73445890	3554316	0	-	0.494845	(0.476,0.515]	chr7	330723	13	INTRON	INTRON	BAZ1B	ENSG00000009954.11	ENST00000339594.9:ENST00000404251.1	protein_coding	protein_coding	protein_coding	protein_coding	5	56	2	1.80284	2.12941	2.45598	0.033161	0.00945755	0.145899	0.0817766
chr12	122134320	122134414	5240431	0	+	0.425532	(0.408,0.44]	chr12	497537	1	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	MLXIP	ENSG00000175727.14	ENST00000319080.12:ENST00000538698.5:ENST00000541750.1:ENST00000366272.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	110	2	2.08282	2.129295	2.17577	0.0051355	0.00269594	0.062965	0.0479115
chr11	85661207	85661306	5013444	0	-	0.292929	(0.28,0.32]	chr11	472883	36	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	CREBZF	ENSG00000137504.15	ENST00000682836.1:ENST00000527447.2:ENST00000490820.2:ENST00000528561.5:ENST00000260058.9:ENST00000531515.5:ENST00000534224.1:ENST00000525639.1:ENST00000527529.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	18	248	2	1.94014	2.12926	2.31838	0.00462425	4.28519e-4	0.0599377	0.0185367
chr1	6195552	6195652	366159	0	-	0.53	(0.515,0.57]	chr1	43024	21	INTRON	INTRON	RPL22	ENSG00000116251.11	ENST00000234875.9:ENST00000480661.1:ENST00000497965.5:ENST00000471204.5:ENST00000465387.5:ENST00000462296.5:ENST00000465335.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	68	2	2.06206	2.12924	2.19642	0.0135396	0.00442355	0.101363	0.0588897
chr5	91374687	91374776	2674899	0	-	0.438202	(0.408,0.44]	chr5	253094	4	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ARRDC3	ENSG00000113369.9	ENST00000265138.4:ENST00000505631.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	86	2	1.99397	2.129185	2.2644	0.00768371	0.00610802	0.0753803	0.0706941
chr3	40488628	40488725	1402145	0	+	0.494845	(0.476,0.515]	chr3	147316	5	UTR3	UTR3:EXON_MRNA:INTRON	ZNF619:ZNF620	ENSG00000177873.14:ENSG00000177842.12	ENST00000447116.6:ENST00000429348.6:ENST00000432264.4:ENST00000649142.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	94	2	1.73456	2.12918	2.5238	0.0140928	0.00218334	0.0959618	0.0435144
chr1	235281639	235281739	663397	0	-	0.43	(0.408,0.44]	chr1	78552	205	INTRON	INTRON	ARID4B	ENSG00000054267.22	ENST00000349213.7:ENST00000366603.6:ENST00000264183.9:ENST00000421364.5:ENST00000491632.5:ENST00000418304.1:ENST00000466653.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	128	2	2.03896	2.129165	2.21937	0.00968464	6.40147e-4	0.0828348	0.0228915
chr9	2827651	2827738	4228400	0	-	0.471264	(0.44,0.476]	chr9	388706	1	INTRON	INTRON	PUM3	ENSG00000080608.10	ENST00000397885.3	protein_coding	protein_coding	protein_coding	protein_coding	6	65	2	1.54868	2.12914	2.7096	0.0457575	0.00376205	0.164677	0.0539118
chr12	53026610	53026706	5141629	0	+	0.5	(0.476,0.515]	chr12	485021	9	INTRON	INTRON	EIF4B	ENSG00000063046.18	ENST00000549077.5:ENST00000262056.14:ENST00000420463.7:ENST00000416762.7:ENST00000550704.5:ENST00000549481.5:ENST00000552490.5:ENST00000550390.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	42	2	1.52615	2.1291	2.73205	0.0739267	0.0159328	0.190914	0.109464
chr1	61207953	61208053	128652	0	+	0.39	(0.378,0.408]	chr1	14782	40	INTRON	INTRON	NFIA	ENSG00000162599.17	ENST00000371191.5:ENST00000664495.1:ENST00000476646.5:ENST00000407417.7:ENST00000479364.1:ENST00000371189.8:ENST00000670151.1:ENST00000664149.1:ENST00000662015.1:ENST00000403491.8:ENST00000371187.7:ENST00000485903.6:ENST00000371185.6:ENST00000371184.6:ENST00000663597.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	76	2	1.72045	2.12899	2.53753	0.0424671	0.00271682	0.161763	0.0467523
chr7	129041356	129041456	3636445	0	-	0.33	(0.32,0.35]	chr7	338143	4	SS5_PROX	SS5_PROX:INTRON	TNPO3	ENSG00000064419.14	ENST00000627585.2:ENST00000265388.10:ENST00000471234.5:ENST00000482320.5:ENST00000471166.1	protein_coding	protein_coding	protein_coding	protein_coding	9	110	2	1.97854	2.128965	2.27939	0.00844518	0.00494114	0.0776969	0.0646039
chr2	61398026	61398126	1129823	0	-	0.48	(0.476,0.515]	chr2	121485	24	INTRON	INTRON	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000453133.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	98	2	1.6612	2.12896	2.59672	0.0245383	6.3664e-4	0.12011	0.0228285
chr21	9350230	9350330	7367635	0	+	0.33	(0.32,0.35]	chr21	751932	63	INTRON	INTRON	ENSG00000278932	ENSG00000278932.5	ENST00000622961.3:ENST00000686553.1:ENST00000691955.1:ENST00000625153.3:ENST00000692626.1:ENST00000685951.1:ENST00000686510.1:ENST00000692884.1	lncRNA	lncRNA	lncRNA	lncRNA	5	66	2	1.8526	2.12895	2.4053	0.0332438	0.0108284	0.134145	0.0920575
chr3	194404934	194405033	1890343	0	-	0.232323	[0,0.28]	chr3	189090	24	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ATP13A3	ENSG00000133657.17	ENST00000687055.1:ENST00000645538.1:ENST00000645319.2:ENST00000690810.1:ENST00000429136.7:ENST00000645621.1:ENST00000691700.1:ENST00000461660.2:ENST00000685123.1:ENST00000642744.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	9	146	2	1.88199	2.128905	2.37582	0.0234167	0.0016947	0.118544	0.0381936
chr8	129346752	129346851	4058727	0	-	0.363636	(0.35,0.378]	chr8	369545	16	INTRON	INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000657400.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1	lncRNA	lncRNA	lncRNA	lncRNA	11	131	2	2.02753	2.1288400000000003	2.23015	0.00372465	0.00308416	0.0561984	0.0496955
chr8	81720908	81720986	3979570	0	-	0.615385	(0.57,1]	chr8	364649	3	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	ZFAND1	ENSG00000104231.11	ENST00000220669.10:ENST00000523096.5:ENST00000522520.5:ENST00000519464.5:ENST00000521895.5:ENST00000521287.5:ENST00000523431.5:ENST00000520635.5:ENST00000519523.5:ENST00000517588.5:ENST00000520604.5:ENST00000523361.5:ENST00000521742.5:ENST00000517450.5:ENST00000518419.5:ENST00000520076.5:ENST00000524339.5:ENST00000517353.5:ENST00000519820.5:ENST00000521885.5:ENST00000520941.5:ENST00000523012.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	49	2	2.01786	2.1287900000000004	2.23972	0.00670296	0.00313784	0.0707084	0.0514466
chr17	27108810	27108910	6579913	0	+	0.36	(0.35,0.378]	chr17	639586	120	INTRON	INTRON	ENSG00000285822	ENSG00000285822.1	ENST00000649401.1	lncRNA	lncRNA	lncRNA	lncRNA	15	178	2	2.05654	2.12878	2.20102	0.00253353	0.00110896	0.0448135	0.0305063
chr10	123163928	123164021	4533259	0	+	0.204301	[0,0.28]	chr10	418443	2	UTR3	UTR3:EXON_MRNA:INTRON	BUB3	ENSG00000154473.18	ENST00000368865.9:ENST00000368859.6:ENST00000368858.9	protein_coding	protein_coding	protein_coding	protein_coding	13	194	2	1.94817	2.128775	2.30938	0.00572322	0.00350205	0.0657377	0.0544406
chr3	33826778	33826877	1394673	0	+	0.313131	(0.28,0.32]	chr3	146059	3	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	PDCD6IP	ENSG00000170248.15	ENST00000457054.6:ENST00000648706.1:ENST00000307296.8:ENST00000459659.1:ENST00000412887.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	75	2	1.47751	2.128775	2.78004	0.0351404	0.0193244	0.149985	0.108861
chr1	30984332	30984431	412075	0	-	0.414141	(0.408,0.44]	chr1	49701	23	INTRON	INTRON	PUM1	ENSG00000134644.16	ENST00000426105.7:ENST00000373747.7:ENST00000257075.9:ENST00000424085.6:ENST00000525843.5:ENST00000440538.6:ENST00000498419.5:ENST00000373741.8:ENST00000373742.6:ENST00000532678.1:ENST00000526215.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	42	2	1.81759	2.128735	2.43988	0.0398236	0.0316273	0.144405	0.143072
chr1	113954125	113954201	192047	0	+	0.434211	(0.408,0.44]	chr1	21164	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HIPK1	ENSG00000163349.22	ENST00000426820.7:ENST00000626993.2:ENST00000369559.8:ENST00000369558.5:ENST00000369561.8:ENST00000369555.6:ENST00000340480.8:ENST00000369553.5	protein_coding	protein_coding	protein_coding	protein_coding	4	42	2	1.81759	2.128735	2.43988	0.0398236	0.0316273	0.144405	0.143072
chr11	86337630	86337730	4842720	0	+	0.41	(0.408,0.44]	chr11	451824	1	SS5_PROX	SS5_PROX:INTRON	HIKESHI	ENSG00000149196.17	ENST00000533986.5:ENST00000278483.8:ENST00000531485.5:ENST00000528004.5:ENST00000530208.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	42	2	1.81759	2.128735	2.43988	0.0398236	0.0316273	0.144405	0.143072
chr18	12645018	12645118	6949163	0	-	0.42	(0.408,0.44]	chr18	687396	88	INTRON	INTRON	SPIRE1	ENSG00000134278.16	ENST00000409402.9:ENST00000410092.7:ENST00000309836.9:ENST00000453447.6:ENST00000449797.5:ENST00000497844.6:ENST00000462226.1	protein_coding	protein_coding	protein_coding	protein_coding	4	42	2	1.81759	2.128735	2.43988	0.0398236	0.0316273	0.144405	0.143072
chr6	53318671	53318770	3107886	0	-	0.424242	(0.408,0.44]	chr6	291049	226	INTRON	INTRON	ELOVL5	ENSG00000012660.14	ENST00000370918.8:ENST00000542638.5:ENST00000304434.11:ENST00000485336.5:ENST00000465983.5:ENST00000486973.1:ENST00000370913.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	89	2	1.81017	2.128735	2.4473	0.0217525	0.0013419	0.11491	0.0336974
chr1	204536417	204536517	297622	0	+	0.36	(0.35,0.378]	chr1	34290	1	SS3_PROX	SS3_PROX:INTRON	MDM4	ENSG00000198625.14	ENST00000367183.7:ENST00000391947.6:ENST00000454264.6:ENST00000612738.4:ENST00000614459.4:ENST00000616250.4:ENST00000367182.8:ENST00000463049.5:ENST00000470908.5:ENST00000471783.1:ENST00000367180.5:ENST00000507825.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	126	2	1.91024	2.12873	2.34722	0.00458484	0.00312988	0.0622822	0.0499376
chr4	126601796	126601896	2236727	0	-	0.38	(0.378,0.408]	chr4	219023	1363	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	9	90	2	1.86301	2.128725	2.39444	0.0122858	0.00544393	0.091087	0.066876
chr4	159273710	159273810	2075219	0	+	0.27	[0,0.28]	chr4	205230	51	INTRON	INTRON	RAPGEF2	ENSG00000109756.10	ENST00000644474.1:ENST00000691494.1:ENST00000505478.5:ENST00000504604.5:ENST00000644902.1:ENST00000511336.5:ENST00000510510.5:ENST00000264431.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	70	2	1.71089	2.128565	2.54624	0.0388449	0.0318277	0.14477	0.143072
chr8	90280787	90280887	3792901	0	+	0.42	(0.408,0.44]	chr8	351786	336	INTRON	INTRON	LINC00534	ENSG00000253394.7	ENST00000662145.1:ENST00000655523.1:ENST00000517400.6:ENST00000658299.1:ENST00000663329.1:ENST00000658342.1:ENST00000523283.6:ENST00000655219.1:ENST00000662692.1:ENST00000667296.1:ENST00000667565.1:ENST00000523406.2:ENST00000659030.1:ENST00000653734.1:ENST00000654785.1:ENST00000524361.5:ENST00000668745.1:ENST00000666641.2:ENST00000661519.1:ENST00000671657.1:ENST00000655123.1:ENST00000663098.1:ENST00000670903.1:ENST00000654946.1	lncRNA	lncRNA	lncRNA	lncRNA	8	89	2	2.09818	2.1285600000000002	2.15894	0.00772939	0.00504142	0.0757122	0.0646039
chr15	58913110	58913206	6193922	0	-	0.322917	(0.32,0.35]	chr15	590095	1	SS5_PROX	SS5_PROX:INTRON	SLTM	ENSG00000137776.17	ENST00000380516.7:ENST00000492526.5:ENST00000557924.5:ENST00000558756.5:ENST00000249736.11:ENST00000559305.5:ENST00000480144.5:ENST00000628684.2:ENST00000559880.5:ENST00000558486.5:ENST00000560682.5:ENST00000557950.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	80	2	1.69107	2.12848	2.56589	0.0517392	0.00204522	0.159306	0.041908
chr1	32195294	32195394	64324	0	+	0.43	(0.408,0.44]	chr1	8208	2	UTR3	UTR3:EXON_MRNA	TXLNA	ENSG00000084652.16	ENST00000373610.8:ENST00000373609.1	protein_coding	protein_coding	protein_coding	protein_coding	8	78	2	1.49971	2.12839	2.75707	0.0298505	0.00317496	0.142135	0.0503542
chr2	108608254	108608354	846592	0	+	0.41	(0.408,0.44]	chr2	94691	6	INTRON	INTRON	LIMS1	ENSG00000169756.17	ENST00000695516.1:ENST00000544547.6:ENST00000695517.1:ENST00000695518.1:ENST00000695519.1:ENST00000332345.10:ENST00000695520.1:ENST00000393310.5:ENST00000695521.1:ENST00000410093.5	protein_coding	protein_coding	protein_coding	protein_coding	8	78	2	1.49971	2.12839	2.75707	0.0298505	0.00317496	0.142135	0.0503542
chr1	26777518	26777615	52016	0	+	0.484536	(0.476,0.515]	chr1	6647	12	INTRON	INTRON	ARID1A	ENSG00000117713.21	ENST00000430799.7:ENST00000324856.13:ENST00000457599.6:ENST00000374152.7:ENST00000636219.1:ENST00000466382.2:ENST00000532781.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	85	2	1.84346	2.12833	2.4132	0.0114152	0.00417094	0.095586	0.0570595
chr5	6730412	6730512	2316005	0	+	0.59	(0.57,1]	chr5	224267	149	INTRON	INTRON	TENT4A	ENSG00000112941.14	ENST00000230859.8:ENST00000515721.1:ENST00000631941.2	protein_coding	protein_coding	protein_coding	protein_coding	6	35	2	2.01216	2.12825	2.24434	0.0163389	0.00677343	0.101571	0.074225
chr11	66642265	66642363	4811066	0	+	0.408163	(0.378,0.408]	chr11	447893	12	INTRON	INTRON	RBM14-RBM4:RBM4	ENSG00000248643.5:ENSG00000173933.21	ENST00000412278.2:ENST00000421355.1:ENST00000500635.2:ENST00000396053.9:ENST00000408993.6:ENST00000578778.5:ENST00000398692.8:ENST00000310092.12:ENST00000510173.6:ENST00000528039.5:ENST00000506523.6:ENST00000530235.1:ENST00000409406.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	102	2	1.84742	2.128225	2.40903	0.013385	0.00165739	0.0946278	0.0376447
chr12	106955203	106955301	5403889	0	-	0.336735	(0.32,0.35]	chr12	515650	13	EXON_LNCRNA	EXON_LNCRNA	TMEM263-DT	ENSG00000260329.1	ENST00000570282.1	lncRNA	lncRNA	lncRNA	lncRNA	3	42	2	1.94202	2.128035	2.31405	0.0517107	0.0486128	0.176696	0.153946
chr17	66411412	66411512	6663386	0	+	0.33	(0.32,0.35]	chr17	650326	472	INTRON	INTRON	PRKCA	ENSG00000154229.12	ENST00000413366.8:ENST00000578063.5:ENST00000284384.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	42	2	1.94202	2.128035	2.31405	0.0517107	0.0486128	0.176696	0.153946
chr2	127799363	127799463	1225767	0	-	0.33	(0.32,0.35]	chr2	130519	280	INTRON	INTRON	WDR33	ENSG00000136709.12	ENST00000322313.9:ENST00000436787.5:ENST00000393006.5:ENST00000409658.7:ENST00000408998.1	protein_coding	protein_coding	protein_coding	protein_coding	3	42	2	1.94202	2.128035	2.31405	0.0517107	0.0486128	0.176696	0.153946
chr7	100680852	100680948	3587383	0	-	0.625	(0.57,1]	chr7	334564	15	UTR3	UTR3:EXON_MRNA	GIGYF1	ENSG00000146830.11	ENST00000678049.1:ENST00000646601.1:ENST00000275732.5	protein_coding	protein_coding	protein_coding	protein_coding	12	63	2	1.67732	2.12799	2.57866	0.00847781	5.14593e-4	0.0830896	0.0208667
chr6	7160977	7161077	2798897	0	+	0.5	(0.476,0.515]	chr6	263733	198	INTRON	INTRON	RREB1	ENSG00000124782.21	ENST00000379933.7:ENST00000491191.5:ENST00000471433.5:ENST00000379938.7:ENST00000467782.5:ENST00000349384.10:ENST00000334984.10:ENST00000475946.5:ENST00000483150.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	77	2	1.48441	2.12796	2.77151	0.0315624	0.00288481	0.144381	0.0475859
chr17	82248385	82248482	6852564	0	-	0.618557	(0.57,1]	chr17	679118	25	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	CSNK1D	ENSG00000141551.15	ENST00000584672.1:ENST00000398519.9:ENST00000314028.11:ENST00000581241.5:ENST00000584377.5:ENST00000392334.6:ENST00000578501.5:ENST00000581737.1:ENST00000580784.5:ENST00000269361.11:ENST00000403276.7:ENST00000580565.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	34	2	1.87172	2.127815	2.38391	0.0152293	0.0104374	0.0996307	0.0902296
chr15	101292540	101292639	6270020	0	-	0.272727	[0,0.28]	chr15	598025	1	SS5_PROX	SS5_PROX:INTRON	SNRPA1	ENSG00000131876.18	ENST00000254193.11:ENST00000558036.5:ENST00000559309.5:ENST00000394082.8:ENST00000540017.6:ENST00000560496.5:ENST00000560383.5:ENST00000558059.5:ENST00000560987.5:ENST00000560856.5:ENST00000558020.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	100	2	2.09841	2.12776	2.15711	0.0161128	0.0151026	0.108435	0.101453
chr18	9498809	9498909	6871367	0	+	0.4	(0.378,0.408]	chr18	680716	190	INTRON	INTRON	RALBP1	ENSG00000017797.13	ENST00000019317.8:ENST00000585015.6:ENST00000383432.8:ENST00000609094.2:ENST00000458039.3:ENST00000577221.1	protein_coding	protein_coding	protein_coding	protein_coding	4	43	2	1.72045	2.12774	2.53503	0.0424671	0.0319942	0.161763	0.13174
chr8	31063888	31063988	3728236	0	+	0.39	(0.378,0.408]	chr8	346536	2	SS3_PROX	SS3_PROX:INTRON	WRN	ENSG00000165392.11	ENST00000650667.1:ENST00000298139.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	135	2	1.88712	2.1277	2.36828	0.00832823	6.41373e-4	0.0774402	0.0228924
chr17	35831641	35831740	6601318	0	+	0.393939	(0.378,0.408]	chr17	642440	3	EXON_MRNA	EXON_MRNA:INTRON	TAF15	ENSG00000270647.7	ENST00000605844.6:ENST00000603777.6:ENST00000604694.2:ENST00000689923.1:ENST00000603393.6:ENST00000685897.1:ENST00000603427.6:ENST00000604879.6:ENST00000604841.5:ENST00000603067.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	19	188	2	1.76799	2.12767	2.48735	0.00237396	8.76888e-4	0.0448576	0.0271443
chr2	156188587	156188687	1248315	0	-	0.4	(0.378,0.408]	chr2	132415	376	INTRON	INTRON	LINC01876	ENSG00000226383.7	ENST00000635799.1:ENST00000662073.1:ENST00000659502.1:ENST00000428651.2:ENST00000661513.1:ENST00000657334.1:ENST00000638047.1:ENST00000637554.1:ENST00000636956.1:ENST00000637665.1:ENST00000637476.1:ENST00000637324.1	lncRNA	lncRNA	lncRNA	lncRNA	4	49	2	2.04292	2.12765	2.21238	0.0326035	0.0218124	0.145164	0.11491
chr2	111828914	111829013	1214309	0	-	0.545455	(0.515,0.57]	chr2	129124	27	INTRON	INTRON	ANAPC1	ENSG00000153107.13	ENST00000427997.5:ENST00000341068.8	protein_coding	protein_coding	protein_coding	protein_coding	5	48	2	1.81744	2.1276349999999997	2.43783	0.031028	0.00916404	0.143457	0.0812949
chr8	23570243	23570342	3715516	0	+	0.393939	(0.378,0.408]	chr8	345238	14	INTRON	INTRON	SLC25A37	ENSG00000147454.14	ENST00000519973.6:ENST00000290075.10:ENST00000417331.6:ENST00000518881.5:ENST00000523930.1:ENST00000523883.5:ENST00000522164.5:ENST00000521637.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	31	327	2	1.81256	2.1274249999999997	2.44229	0.00104351	1.58904e-4	0.0297059	0.0115126
chr2	43914525	43914624	1109756	0	-	0.494949	(0.476,0.515]	chr2	118973	21	EXON_MRNA	EXON_MRNA:INTRON	LRPPRC	ENSG00000138095.20	ENST00000260665.12:ENST00000684454.1:ENST00000682308.1:ENST00000683459.1:ENST00000683623.1:ENST00000683125.1:ENST00000683994.1:ENST00000684619.1:ENST00000683833.1:ENST00000682546.1:ENST00000683080.1:ENST00000681993.1:ENST00000682585.1:ENST00000683220.1:ENST00000683796.1:ENST00000682607.1:ENST00000683590.1:ENST00000684306.1:ENST00000683213.1:ENST00000683409.1:ENST00000684418.1:ENST00000682779.1:ENST00000682885.1:ENST00000684743.1:ENST00000683346.1:ENST00000683072.1:ENST00000682303.1:ENST00000683329.1:ENST00000682933.1:ENST00000684383.1:ENST00000682480.1:ENST00000684290.1:ENST00000684341.1:ENST00000682595.1:ENST00000683645.1:ENST00000683802.1:ENST00000682845.1:ENST00000682295.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	71	2	1.84346	2.127335	2.41121	0.0114152	0.0110342	0.095586	0.0873897
chr11	64112456	64112556	4964094	0	-	0.45	(0.44,0.476]	chr11	467267	968	INTRON	INTRON	MACROD1	ENSG00000133315.12	ENST00000255681.7:ENST00000675777.1:ENST00000543422.5:ENST00000545464.5:ENST00000542359.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	58	2	2.10892	2.127325	2.14573	0.0238593	0.0132897	0.129075	0.0944742
chr22	27923168	27923267	7492821	0	+	0.535354	(0.515,0.57]	chr22	764485	7	EXON_LNCRNA	EXON_LNCRNA:INTRON	TTC28-AS1	ENSG00000235954.8	ENST00000430853.5:ENST00000434221.6:ENST00000417497.6:ENST00000662329.1:ENST00000424161.6:ENST00000419253.1:ENST00000437713.7:ENST00000454741.5:ENST00000659843.1:ENST00000665376.1:ENST00000453632.6:ENST00000662682.1:ENST00000655332.1:ENST00000454996.7:ENST00000665505.1:ENST00000435348.6:ENST00000428818.5:ENST00000664946.1:ENST00000425112.2:ENST00000654553.1:ENST00000669227.1:ENST00000670661.1:ENST00000452612.5:ENST00000688200.1:ENST00000690710.1:ENST00000670585.1:ENST00000662424.1	lncRNA	lncRNA	lncRNA	lncRNA	8	74	2	2.06758	2.127275	2.18697	0.0140038	0.00232379	0.0959618	0.0442989
chr6	33407768	33407866	2847115	0	+	0.428571	(0.408,0.44]	chr6	268696	5	INTRON	INTRON	KIFC1	ENSG00000237649.8	ENST00000428849.7	protein_coding	protein_coding	protein_coding	protein_coding	11	116	2	1.79845	2.12724	2.45603	0.0071196	0.00171857	0.0756118	0.0374701
chr14	23070824	23070924	5842730	0	-	0.52	(0.515,0.57]	chr14	555612	3	SS5_PROX	SS5_PROX:INTRON	ACIN1	ENSG00000100813.15	ENST00000605057.6:ENST00000557515.5:ENST00000262710.5:ENST00000457657.5:ENST00000357481.6:ENST00000338631.10:ENST00000397341.7:ENST00000555053.5:ENST00000555566.1:ENST00000553721.5:ENST00000557432.2:ENST00000555352.2:ENST00000553501.1:ENST00000554979.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	66	2	1.98329	2.127225	2.27116	0.0105419	0.00601759	0.0860389	0.0700813
chr10	819732	819829	4541443	0	-	0.371134	(0.35,0.378]	chr10	419215	20	EXON_MRNA	EXON_MRNA:INTRON	LARP4B	ENSG00000107929.16	ENST00000614908.5:ENST00000688365.1:ENST00000316157.8:ENST00000690516.1:ENST00000689323.1:ENST00000688042.1:ENST00000609318.5:ENST00000690211.1:ENST00000448368.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	45	2	1.58862	2.127045	2.66547	0.0615516	0.0233639	0.193423	0.118323
chr2	235508037	235508137	1041475	0	+	0.46	(0.44,0.476]	chr2	111217	128	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	67	2	1.94723	2.12698	2.30673	0.0227424	0.0055175	0.117618	0.0672816
chr11	75406226	75406323	4831898	0	+	0.28866000000000003	(0.28,0.32]	chr11	450864	15	UTR3	UTR3:EXON_MRNA:INTRON	RPS3	ENSG00000149273.15	ENST00000531188.6:ENST00000527446.5	protein_coding	protein_coding	protein_coding	protein_coding	6	73	2	1.45235	2.12696	2.80157	0.0543728	0.0147132	0.164972	0.106558
chr6	75637001	75637100	2905303	0	+	0.434343	(0.408,0.44]	chr6	274513	18	INTRON	INTRON	SENP6	ENSG00000112701.18	ENST00000370010.6:ENST00000447266.7:ENST00000327284.12:ENST00000483859.6:ENST00000424947.6	protein_coding	protein_coding	protein_coding	protein_coding	12	100	2	1.30303	2.126955	2.95088	0.0307142	0.00142252	0.143385	0.0340865
chr17	75217784	75217884	6674387	0	+	0.47	(0.44,0.476]	chr17	651376	2	SS3_PROX	SS3_PROX:INTRON	NUP85	ENSG00000125450.11	ENST00000245544.9:ENST00000583948.5:ENST00000579324.5:ENST00000449421.6:ENST00000581104.5:ENST00000579298.5:ENST00000578830.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	67	2	1.98938	2.12695	2.26452	0.0198602	0.00654074	0.109608	0.0735539
chr3	69049345	69049440	1734692	0	-	0.421053	(0.408,0.44]	chr3	176804	4	PRIMIRNA	PRIMIRNA:INTRON	TMF1:MIR3136	ENSG00000144747.17:ENSG00000265355.1	ENST00000398559.7:ENST00000646304.1:ENST00000646708.1:ENST00000488010.5:ENST00000583498.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:nonsense_mediated_decay:primary_miRNA	12	133	2	1.65543	2.126795	2.59816	0.0193369	1.65762e-4	0.108861	0.0111355
chr7	151514503	151514603	3674872	0	-	0.36	(0.35,0.378]	chr7	341207	160	INTRON	INTRON	RHEB	ENSG00000106615.10	ENST00000262187.10:ENST00000472642.5:ENST00000478470.5:ENST00000496004.5:ENST00000470370.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	14	137	2	1.4329	2.1267899999999997	2.82068	0.0171327	0.00084924900000000005	0.111068	0.0267232
chr2	96868218	96868315	1181953	0	-	0.525773	(0.515,0.57]	chr2	126696	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SEMA4C	ENSG00000168758.11	ENST00000305476.10:ENST00000442264.5:ENST00000449330.1	protein_coding	protein_coding	protein_coding	protein_coding	4	36	2	1.81744	2.126665	2.43589	0.0370871	0.031028	0.143457	0.139194
chr4	139117428	139117528	2246745	0	-	0.57	(0.515,0.57]	chr4	219577	2	SS5_PROX	SS5_PROX:INTRON	ELF2	ENSG00000109381.21	ENST00000394235.6:ENST00000686138.1:ENST00000379550.5:ENST00000511184.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	36	2	1.81744	2.126665	2.43589	0.0370871	0.031028	0.143457	0.139194
chr1	39349024	39349115	77394	0	+	0.340659	(0.32,0.35]	chr1	9919	3	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	MACF1	ENSG00000127603.32	ENST00000361689.7:ENST00000567887.5:ENST00000372915.8:ENST00000564288.6:ENST00000671089.2:ENST00000530262.5:ENST00000372925.6:ENST00000476350.1:ENST00000289893.8:ENST00000693546.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	50	2	2.02133	2.126575	2.23182	0.068598	0.017146	0.184298	0.111072
chr4	120064774	120064873	2230808	0	-	0.313131	(0.28,0.32]	chr4	218560	23	INTRON	INTRON	MAD2L1	ENSG00000164109.14	ENST00000296509.11:ENST00000333047.9:ENST00000504707.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	60	2	1.47299	2.126515	2.78004	0.0597769	0.0193244	0.189982	0.108861
chr2	26376740	26376839	715324	0	+	0.30303	(0.28,0.32]	chr2	82601	12	INTRON	INTRON	SELENOI	ENSG00000138018.19	ENST00000260585.12:ENST00000447170.1	protein_coding	protein_coding	protein_coding	protein_coding	6	86	2	1.86798	2.12651	2.38504	0.0335733	0.00475871	0.134145	0.0636201
chr7	152299269	152299369	3679915	0	-	0.32	(0.28,0.32]	chr7	341623	125	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000684262.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	62	2	1.79739	2.12642	2.45545	0.0438092	0.0224995	0.14901	0.124921
chr10	133461749	133461847	4540592	0	+	0.459184	(0.44,0.476]	chr10	419129	12	INTRON	INTRON	SCART1	ENSG00000214279.13	ENST00000482993.6:ENST00000463137.5:ENST00000640237.1:ENST00000488261.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	68	2	1.71574	2.12635	2.53696	0.045256	0.00204135	0.149888	0.041855
chr15	65770785	65770885	6209581	0	-	0.28	[0,0.28]	chr15	592617	35	INTRON	INTRON	DENND4A	ENSG00000174485.16	ENST00000443035.8:ENST00000431932.6:ENST00000564674.5:ENST00000568515.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	60	2	1.75741	2.12634	2.49527	0.0436497	0.0424454	0.161763	0.14882
chr10	18651395	18651491	4570715	0	-	0.5	(0.476,0.515]	chr10	421535	3	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7:ENST00000606425.2:ENST00000456217.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	98	2	1.9127	2.1263	2.3399	0.00864134	0.00275491	0.0840615	0.0469265
chr14	68020200	68020300	5767379	0	+	0.54	(0.515,0.57]	chr14	547066	195	INTRON	INTRON	RAD51B	ENSG00000182185.19	ENST00000487861.5:ENST00000471583.6:ENST00000479335.5:ENST00000487270.5:ENST00000488612.5:ENST00000553595.5:ENST00000497460.5:ENST00000492236.5:ENST00000554244.5:ENST00000478014.5:ENST00000469165.6:ENST00000460526.5:ENST00000468382.5:ENST00000557045.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	30	2	1.79136	2.1262	2.46104	0.0638444	0.032841	0.177811	0.145164
chr6	88798264	88798363	3157475	0	-	0.525253	(0.515,0.57]	chr6	294191	280	INTRON	INTRON	RNGTT	ENSG00000111880.16	ENST00000369485.9:ENST00000369475.7:ENST00000627296.1:ENST00000538899.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	30	2	1.79136	2.1262	2.46104	0.0638444	0.032841	0.177811	0.145164
chr8	47362648	47362748	3748245	0	+	0.52	(0.515,0.57]	chr8	348805	13	INTRON	INTRON	SPIDR	ENSG00000164808.17	ENST00000541342.2:ENST00000523814.5:ENST00000518074.5:ENST00000522900.5:ENST00000297423.9:ENST00000521550.5:ENST00000517824.5:ENST00000524126.5:ENST00000524141.5:ENST00000519661.5:ENST00000522222.5:ENST00000522117.5:ENST00000524033.5:ENST00000524006.5:ENST00000521214.5:ENST00000521918.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	30	2	1.79136	2.1262	2.46104	0.0638444	0.032841	0.177811	0.145164
chr19	1588627	1588726	7112483	0	-	0.585859	(0.57,1]	chr19	714541	24	INTRON	INTRON	MBD3:ENSG00000267059	ENSG00000071655.18:ENSG00000267059.2	ENST00000434436.8:ENST00000156825.5:ENST00000585937.1:ENST00000585967.5:ENST00000592965.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	25	2	1.91937	2.12616	2.33295	0.0468438	0.0122896	0.167716	0.091087
chr7	121142441	121142541	3395192	0	+	0.27	[0,0.28]	chr7	317776	3	SS5_PROX	SS5_PROX:INTRON	CPED1	ENSG00000106034.18	ENST00000310396.10:ENST00000450913.6:ENST00000423795.5	protein_coding	protein_coding	protein_coding	protein_coding	13	153	2	1.16836	2.1261550000000002	3.08395	0.0536311	0.00163044	0.180533	0.0368492
chr7	123738018	123738118	3632551	0	-	0.29	(0.28,0.32]	chr7	337581	284	INTRON	INTRON	WASL	ENSG00000106299.8	ENST00000223023.5	protein_coding	protein_coding	protein_coding	protein_coding	6	82	2	2.03152	2.126105	2.22069	0.0243177	0.00983556	0.12011	0.0877296
chr12	49268964	49269064	5132761	0	+	0.41	(0.408,0.44]	chr12	483871	1	SS3_PROX	SS3_PROX:INTRON	TUBA1C	ENSG00000167553.17	ENST00000541364.5:ENST00000549818.5:ENST00000552448.1:ENST00000552125.1:ENST00000549183.1:ENST00000301072.11	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	98	2	1.91785	2.12608	2.33431	0.0129219	0.00528902	0.0990564	0.0636331
chr7	121198226	121198326	3395751	0	+	0.29	(0.28,0.32]	chr7	317781	482	INTRON	INTRON	CPED1	ENSG00000106034.18	ENST00000310396.10:ENST00000450913.6:ENST00000423795.5:ENST00000466055.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	99	2	1.53798	2.126065	2.71415	0.0287839	0.005045	0.140044	0.0621586
chr13	95192836	95192936	5638781	0	-	0.46	(0.44,0.476]	chr13	537121	39	INTRON	INTRON	ABCC4	ENSG00000125257.16	ENST00000645237.2:ENST00000643051.1:ENST00000643842.1:ENST00000646439.1:ENST00000643816.1:ENST00000536256.3:ENST00000643556.1:ENST00000629385.1:ENST00000642524.1:ENST00000645532.1:ENST00000644471.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	66	2	2.02558	2.1260450000000004	2.22651	0.0363567	0.00376161	0.138959	0.0562562
chr12	68646304	68646403	5161562	0	+	0.515152	(0.476,0.515]	chr12	488591	48	INTRON	INTRON	RAP1B	ENSG00000127314.18	ENST00000460800.5:ENST00000393436.9:ENST00000250559.14:ENST00000425247.6:ENST00000501412.2:ENST00000450214.6:ENST00000463493.5:ENST00000537460.5:ENST00000341355.9:ENST00000538283.5:ENST00000541167.5:ENST00000422358.6:ENST00000489473.6:ENST00000545270.5:ENST00000538980.5:ENST00000543393.5:ENST00000542018.5:ENST00000540209.5:ENST00000378985.7:ENST00000453560.6:ENST00000534899.5:ENST00000542145.5:ENST00000539091.5:ENST00000535492.5:ENST00000540781.5:ENST00000485252.6:ENST00000538877.5:ENST00000541386.5:ENST00000543697.5:ENST00000545720.6:ENST00000541216.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	10	106	2	1.91202	2.12596	2.3399	0.00593312	0.00275491	0.0696183	0.0469265
chr9	135951488	135951587	4372470	0	-	0.424242	(0.408,0.44]	chr9	402541	32	INTRON	INTRON	UBAC1	ENSG00000130560.9	ENST00000371756.4:ENST00000478485.1:ENST00000486258.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	24	256	2	1.86655	2.12592	2.38529	0.00260528	7.97828e-5	0.0455058	0.0074342
chr11	67127254	67127353	4812525	0	+	0.454545	(0.44,0.476]	chr11	448100	55	INTRON	INTRON	KDM2A	ENSG00000173120.15	ENST00000529006.7:ENST00000398645.6:ENST00000532436.5:ENST00000527157.1:ENST00000308783.9	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	77	2	1.64563	2.125915	2.6062	0.0363922	0.00148054	0.138959	0.0353633
chr12	132770524	132770623	5449600	0	-	0.40404	(0.378,0.408]	chr12	521962	1	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	GOLGA3	ENSG00000090615.16	ENST00000204726.9:ENST00000450791.8:ENST00000693666.1:ENST00000690057.1:ENST00000688114.1:ENST00000687190.1:ENST00000690511.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	72	2	1.58349	2.125855	2.66822	0.0653091	0.00112898	0.180158	0.0308465
chr7	65875363	65875463	3322898	0	+	0.36	(0.35,0.378]	chr7	309012	14	INTRON	INTRON	VKORC1L1	ENSG00000196715.7	ENST00000360768.5:ENST00000648187.1:ENST00000648179.1:ENST00000434382.2	protein_coding	protein_coding	protein_coding	protein_coding	5	61	2	1.92704	2.12584	2.32464	0.0228255	0.0159285	0.125469	0.101453
chr1	20786085	20786185	389857	0	-	0.53	(0.515,0.57]	chr1	46584	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	HP1BP3	ENSG00000127483.19	ENST00000438032.6:ENST00000312239.10:ENST00000424732.5:ENST00000417710.5:ENST00000375000.5:ENST00000437575.5:ENST00000419490.5:ENST00000414993.1:ENST00000443615.1	protein_coding	protein_coding	protein_coding	protein_coding	18	147	2	1.70331	2.1258049999999997	2.5483	0.00317514	4.26839e-4	0.051833	0.0189958
chr11	78073083	78073141	4997795	0	-	0.362069	(0.35,0.378]	chr11	472258	1	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	NDUFC2-KCTD14:NDUFC2	ENSG00000259112.2:ENSG00000151366.13	ENST00000528251.1:ENST00000530054.1:ENST00000612612.5:ENST00000614236.2:ENST00000281031.5:ENST00000527806.1:ENST00000534029.5:ENST00000525085.1:ENST00000528164.1	protein_coding	protein_coding	protein_coding	protein_coding	4	46	2	1.92704	2.125735	2.32443	0.0544216	0.0228255	0.164972	0.125469
chr16	72514025	72514125	6517797	0	-	0.37	(0.35,0.378]	chr16	631334	217	INTRON	INTRON	LINC01572	ENSG00000261008.8	ENST00000624829.4:ENST00000561611.2:ENST00000656218.1:ENST00000666555.2:ENST00000664155.1:ENST00000657725.1:ENST00000563770.5:ENST00000668081.1	lncRNA	lncRNA	lncRNA	lncRNA	4	46	2	1.92704	2.125735	2.32443	0.0544216	0.0228255	0.164972	0.125469
chr5	10394785	10394885	2318068	0	+	0.43	(0.408,0.44]	chr5	224660	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	MARCHF6	ENSG00000145495.16	ENST00000274140.10:ENST00000449913.6:ENST00000511802.5:ENST00000503788.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	13	137	2	1.96927	2.12573	2.28219	0.00241847	0.00215449	0.0454275	0.0417866
chr6	85623476	85623576	3151251	0	-	0.5	(0.476,0.515]	chr6	293884	1	SS5_PROX	SS5_PROX:INTRON	ENSG00000271793:SYNCRIP	ENSG00000271793.2:ENSG00000135316.19	ENST00000682083.1:ENST00000683074.1:ENST00000681965.1:ENST00000682504.1:ENST00000682106.1:ENST00000683364.1:ENST00000683436.1:ENST00000684220.1:ENST00000683909.1:ENST00000684462.1:ENST00000616122.5:ENST00000678528.1:ENST00000676637.1:ENST00000677771.1:ENST00000355238.11:ENST00000678878.1:ENST00000677481.1:ENST00000677646.1:ENST00000676630.1:ENST00000678618.1:ENST00000676542.1:ENST00000677059.1:ENST00000444272.2:ENST00000678899.1:ENST00000369622.8:ENST00000678355.1:ENST00000676688.1:ENST00000677514.1:ENST00000678816.1:ENST00000678930.1:ENST00000678589.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	103	2	1.76339	2.12564	2.48789	0.00972118	0.00256502	0.0831288	0.0466761
chr3	33064373	33064471	1650830	0	-	0.459184	(0.44,0.476]	chr3	169269	23	INTRON	INTRON	GLB1	ENSG00000170266.16	ENST00000399402.7:ENST00000307363.10:ENST00000307377.12:ENST00000482097.5:ENST00000485698.5:ENST00000498537.5:ENST00000415454.1:ENST00000446732.5:ENST00000438227.1:ENST00000440656.1:ENST00000464355.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	69	2	1.61163	2.125625	2.63962	0.0598319	0.00126329	0.169278	0.0329641
chr20	38427776	38427873	7342233	0	-	0.474227	(0.44,0.476]	chr20	748314	2	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	SNHG17	ENSG00000196756.14	ENST00000654008.2:ENST00000658076.1:ENST00000662982.2:ENST00000456953.7:ENST00000654183.2:ENST00000663540.2:ENST00000651115.2:ENST00000660885.2:ENST00000662213.1:ENST00000665233.2:ENST00000666268.2:ENST00000665735.1:ENST00000660558.2:ENST00000691280.1:ENST00000658488.2:ENST00000688336.1:ENST00000668054.2:ENST00000690441.1:ENST00000655520.2:ENST00000687490.1:ENST00000664626.1:ENST00000658051.1:ENST00000668042.1:ENST00000686971.1:ENST00000663187.1:ENST00000669114.1:ENST00000653343.1:ENST00000666225.1:ENST00000657868.1:ENST00000663534.1:ENST00000658141.1:ENST00000689917.1:ENST00000664073.2:ENST00000653697.1:ENST00000656320.1:ENST00000686814.1:ENST00000417578.7:ENST00000654853.1:ENST00000665440.1:ENST00000436764.7:ENST00000668482.2:ENST00000671249.1:ENST00000655692.1:ENST00000662568.1:ENST00000659255.1:ENST00000693250.1:ENST00000691368.1:ENST00000693227.1:ENST00000690361.1:ENST00000670051.1:ENST00000667912.1:ENST00000693665.1:ENST00000665181.1:ENST00000687532.1:ENST00000691386.1:ENST00000693684.1:ENST00000666331.1:ENST00000669480.1:ENST00000658905.1:ENST00000661252.1:ENST00000669137.1:ENST00000688133.1:ENST00000689414.1:ENST00000691314.1:ENST00000669033.1:ENST00000686145.1:ENST00000653938.1:ENST00000663784.1:ENST00000665003.1:ENST00000659400.1:ENST00000653753.1:ENST00000449469.5:ENST00000654389.1:ENST00000656023.1:ENST00000692262.1:ENST00000414142.5:ENST00000670958.1:ENST00000657216.2:ENST00000664636.1:ENST00000657843.1:ENST00000660189.1:ENST00000660064.1:ENST00000423536.6:ENST00000658455.1:ENST00000666419.1:ENST00000413755.5	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	18	200	2	1.43683	2.12562	2.81441	0.0160617	4.86591e-5	0.109464	0.00605189
chr19	15331135	15331235	7147392	0	-	0.43	(0.408,0.44]	chr19	721965	508	INTRON	INTRON	BRD4	ENSG00000141867.19	ENST00000679869.1:ENST00000360016.9:ENST00000594841.5:ENST00000597315.5:ENST00000601941.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	56	2	2.08376	2.12561	2.16746	0.024436	0.0129886	0.12011	0.0991656
chr1	30991789	30991889	412150	0	-	0.32	(0.28,0.32]	chr1	49701	98	INTRON	INTRON	PUM1	ENSG00000134644.16	ENST00000426105.7:ENST00000373747.7:ENST00000257075.9:ENST00000424085.6:ENST00000525843.5:ENST00000440538.6:ENST00000498419.5:ENST00000373741.8:ENST00000373742.6:ENST00000532678.1:ENST00000526215.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	53	2	1.85772	2.125595	2.39347	0.0504457	0.0300199	0.156383	0.142135
chr1	150366018	150366118	221715	0	+	0.39	(0.378,0.408]	chr1	25051	7	INTRON	INTRON	RPRD2	ENSG00000163125.16	ENST00000492220.1:ENST00000369068.5:ENST00000401000.8:ENST00000369067.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	103	2	1.92269	2.12547	2.32825	0.00836891	0.00317471	0.0822143	0.0503542
chr17	35596543	35596642	6599627	0	+	0.69697	(0.57,1]	chr17	642232	21	INTRON	INTRON	AP2B1	ENSG00000006125.18	ENST00000589774.5:ENST00000616784.4:ENST00000621914.4:ENST00000620039.4:ENST00000616681.4:ENST00000621668.4:ENST00000610402.5:ENST00000612035.4:ENST00000591610.5:ENST00000590538.5:ENST00000614600.4:ENST00000590432.5:ENST00000612116.5:ENST00000618940.4:ENST00000588093.1:ENST00000592167.5:ENST00000593014.3:ENST00000628168.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	37	2	1.66359	2.12546	2.58733	0.0224545	0.00454222	0.124921	0.0595107
chr19	51876881	51876981	7204293	0	-	0.45	(0.44,0.476]	chr19	731045	2	SS5_PROX	SS5_PROX:INTRON	ZNF577	ENSG00000161551.15	ENST00000638827.1:ENST00000639703.1:ENST00000640678.1:ENST00000640955.1:ENST00000301399.12:ENST00000638348.2:ENST00000451628.9:ENST00000639636.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	66	2	1.43625	2.125435	2.81462	0.063142	0.00247064	0.197183	0.0446195
chr1	75787196	75787296	144623	0	+	0.43	(0.408,0.44]	chr1	16318	6	EXON_LNCRNA	EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ACADM:RABGGTB	ENSG00000117054.15:ENSG00000137955.16	ENST00000528016.1:ENST00000496055.5:ENST00000485459.5:ENST00000473406.5:ENST00000370826.3:ENST00000497648.1:ENST00000319942.8:ENST00000462042.5:ENST00000470201.5:ENST00000471759.5:ENST00000491266.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	57	609	2	2.0874	2.12536	2.16332	1.38192e-4	1.01571e-4	0.0107072	0.00850967
chr4	82373018	82373118	2177530	0	-	0.38	(0.378,0.408]	chr4	214154	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	HNRNPD	ENSG00000138668.19	ENST00000313899.12:ENST00000353341.8:ENST00000352301.8:ENST00000513584.1:ENST00000509263.5:ENST00000507010.5:ENST00000515432.1:ENST00000503822.1:ENST00000509107.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	13	144	2	1.37304	2.125355	2.87767	0.0359536	6.0456e-5	0.138959	0.00641893
chr18	692419	692514	6939570	0	-	0.473684	(0.44,0.476]	chr18	686419	13	EXON_MRNA	EXON_MRNA:INTRON	ENOSF1	ENSG00000132199.20	ENST00000647584.2:ENST00000383578.7:ENST00000584259.6:ENST00000340116.12:ENST00000581475.5:ENST00000580982.5:ENST00000585128.6:ENST00000584453.5:ENST00000578651.5:ENST00000585004.5:ENST00000579053.5:ENST00000583771.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	71	2	1.54104	2.12532	2.7096	0.0339289	0.00376205	0.146815	0.0539118
chr9	69230532	69230632	4138703	0	+	0.39	(0.378,0.408]	chr9	377156	3	SS5_PROX	SS5_PROX:INTRON	TJP2	ENSG00000119139.21	ENST00000648087.1:ENST00000647986.1:ENST00000636438.1:ENST00000377245.9:ENST00000348208.9:ENST00000649114.1:ENST00000649943.1:ENST00000636247.1:ENST00000650333.1:ENST00000650522.1:ENST00000649783.1:ENST00000535702.6:ENST00000649134.1:ENST00000539225.2:ENST00000650084.1:ENST00000650460.1:ENST00000648042.1:ENST00000648460.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	83	2	1.94426	2.12527	2.30628	0.0163339	0.00520377	0.101571	0.0655609
chr1	21712294	21712394	396136	0	-	0.45	(0.44,0.476]	chr1	47253	50	INTRON	INTRON	USP48	ENSG00000090686.16	ENST00000400301.5:ENST00000308271.14:ENST00000374732.7:ENST00000529637.5	protein_coding	protein_coding	protein_coding	protein_coding	5	57	2	1.69402	2.125255	2.55649	0.0456129	0.00670547	0.164236	0.0707084
chr9	37261183	37261283	4119069	0	+	0.31	(0.28,0.32]	chr9	375389	743	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000461038.5:ENST00000488607.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	59	2	2.00989	2.1252500000000003	2.24061	0.0427801	0.0194267	0.148082	0.119831
chr1	110366076	110366175	182612	0	+	0.40404	(0.378,0.408]	chr1	20257	97	INTRON	INTRON	LAMTOR5-AS1	ENSG00000224699.10	ENST00000626572.2	lncRNA	lncRNA	lncRNA	lncRNA	18	203	2	2.05112	2.125245	2.19937	0.00125609	9.12005e-4	0.03295	0.0278396
chr16	68314168	68314268	6372291	0	+	0.4	(0.378,0.408]	chr16	612402	16	INTRON	INTRON	PRMT7	ENSG00000132600.18	ENST00000686904.1:ENST00000562381.7:ENST00000689486.1:ENST00000693200.1:ENST00000685141.1:ENST00000562050.6:ENST00000565745.6:ENST00000685109.1:ENST00000689637.1:ENST00000692867.1:ENST00000693670.1:ENST00000692760.1:ENST00000687654.1:ENST00000441236.3:ENST00000675132.1:ENST00000688470.1:ENST00000691833.1:ENST00000690432.1:ENST00000691804.1:ENST00000691961.1:ENST00000690932.1:ENST00000692632.1:ENST00000687444.1:ENST00000692283.1:ENST00000569571.5:ENST00000692621.1:ENST00000566341.5:ENST00000686053.1:ENST00000692966.1:ENST00000691663.1:ENST00000564050.6:ENST00000449359.7:ENST00000569047.7:ENST00000693309.1:ENST00000690311.1:ENST00000565356.5:ENST00000564441.6:ENST00000563520.5:ENST00000565983.5:ENST00000687558.1:ENST00000339507.9:ENST00000688969.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	68	2	1.78703	2.12524	2.46345	0.0240043	0.00827342	0.119664	0.0813266
chr17	32366075	32366164	6598148	0	+	0.269663	[0,0.28]	chr17	641925	2	INTRON	INTRON	ZNF207	ENSG00000010244.19	ENST00000321233.10:ENST00000394673.6:ENST00000394670.9:ENST00000342555.10:ENST00000577908.5:ENST00000581531.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	75	2	2.0412	2.125235	2.20927	0.0794763	0.0106194	0.19979	0.0914726
chr5	112987769	112987868	2453492	0	+	0.373737	(0.35,0.378]	chr5	235079	14	INTRON	INTRON	DCP2	ENSG00000172795.17	ENST00000515408.5:ENST00000513585.6:ENST00000502635.2:ENST00000389063.3:ENST00000674880.1:ENST00000512751.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	10	120	2	1.74668	2.125165	2.50365	0.0198631	5.68631e-4	0.109608	0.0217398
chr2	96863136	96863232	1181885	0	-	0.479167	(0.476,0.515]	chr2	126653	14	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	SEMA4C	ENSG00000168758.11	ENST00000305476.10:ENST00000482925.5:ENST00000467747.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	11	114	2	1.93591	2.125075	2.31424	0.0038383	0.00308038	0.0562562	0.0496438
chr12	104292501	104292601	5210065	0	+	0.45	(0.44,0.476]	chr12	493210	10	INTRON	INTRON	TXNRD1	ENSG00000198431.17	ENST00000525566.6:ENST00000526266.5:ENST00000503506.6:ENST00000526691.5:ENST00000531691.5:ENST00000526390.5:ENST00000531689.5:ENST00000529546.5:ENST00000529751.1:ENST00000528079.6:ENST00000526580.5:ENST00000529784.5:ENST00000524698.5:ENST00000527688.5:ENST00000527335.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	72	2	1.40212	2.12506	2.848	0.0524678	0.00215274	0.178047	0.0417866
chr17	66335694	66335793	6662628	0	+	0.262626	[0,0.28]	chr17	650320	292	INTRON	INTRON	PRKCA	ENSG00000154229.12	ENST00000413366.8:ENST00000578063.5:ENST00000583361.1:ENST00000284384.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	82	2	2.02265	2.1250400000000003	2.22743	0.0449017	0.0097118	0.149888	0.0875962
chr2	110663976	110664075	1206720	0	-	0.373737	(0.35,0.378]	chr2	128694	16	INTRON	INTRON	BUB1	ENSG00000169679.15	ENST00000302759.11:ENST00000535254.6:ENST00000409311.5:ENST00000466333.5:ENST00000666956.1:ENST00000465029.5:ENST00000477481.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	9	93	2	1.33473	2.1249450000000003	2.91516	0.0484067	0.0013628	0.153635	0.0339121
chr4	151011105	151011205	2271730	0	-	0.49	(0.476,0.515]	chr4	220921	817	INTRON	INTRON	LRBA	ENSG00000198589.14	ENST00000357115.9:ENST00000651943.2:ENST00000510413.5:ENST00000651035.1:ENST00000507224.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	46	2	1.92984	2.124925	2.32001	0.0466474	0.0136217	0.151522	0.101682
chr21	46200353	46200453	7470578	0	-	0.4	(0.378,0.408]	chr21	761464	37	INTRON	INTRON	LSS	ENSG00000160285.15	ENST00000356396.8:ENST00000397728.8:ENST00000457828.6:ENST00000522411.5	protein_coding	protein_coding	protein_coding	protein_coding	19	206	2	2.07326	2.1249149999999997	2.17657	0.00280604	3.17557e-4	0.0470768	0.0159645
chr11	69665855	69665953	4974988	0	-	0.520408	(0.515,0.57]	chr11	469826	4	UTR3	UTR3:EXON_MRNA:INTRON	LTO1	ENSG00000149716.13	ENST00000538554.6:ENST00000569105.5:ENST00000279147.9:ENST00000536870.5:ENST00000544096.5:ENST00000537272.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	31	2	2.01737	2.1248899999999997	2.23241	0.0581268	0.0352218	0.188651	0.137535
chr12	53287344	53287434	5142224	0	+	0.533333	(0.515,0.57]	chr12	485205	2	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	ESPL1	ENSG00000135476.12	ENST00000257934.9:ENST00000552671.5:ENST00000535123.6:ENST00000553016.5:ENST00000549154.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	31	2	2.01737	2.1248899999999997	2.23241	0.0581268	0.0352218	0.188651	0.137535
chr2	48375739	48375838	777935	0	+	0.282828	(0.28,0.32]	chr2	87500	4	UTR3	UTR3:EXON_MRNA	FOXN2	ENSG00000170802.17	ENST00000340553.8	protein_coding	protein_coding	protein_coding	protein_coding	5	71	2	2.06884	2.12488	2.18092	0.0271832	0.0152581	0.123904	0.108569
chr7	64338076	64338175	3319684	0	+	0.252525	[0,0.28]	chr7	308636	7	INTRON	INTRON	ZNF736	ENSG00000234444.10	ENST00000355095.8:ENST00000423484.3	protein_coding	protein_coding	protein_coding	protein_coding	5	82	2	1.88025	2.1248299999999998	2.36941	0.029906	0.0178556	0.142135	0.106151
chr19	10672625	10672724	7013402	0	+	0.484848	(0.476,0.515]	chr19	696780	7	INTRON	INTRON	ILF3	ENSG00000129351.17	ENST00000449870.5:ENST00000587928.5:ENST00000407004.7:ENST00000589998.5:ENST00000589600.5:ENST00000590009.5:ENST00000587505.5:ENST00000589052.5:ENST00000250241.12:ENST00000590261.5:ENST00000588657.5:ENST00000592763.5:ENST00000587840.5:ENST00000589416.5:ENST00000585835.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	97	2	1.81741	2.12482	2.43223	0.0141271	0.00145905	0.0959618	0.0349875
chr2	44356468	44356568	1111059	0	-	0.5	(0.476,0.515]	chr2	119235	1	SS3_PROX	SS3_PROX:INTRON	PREPL	ENSG00000138078.16	ENST00000425263.5:ENST00000409411.6:ENST00000426481.5:ENST00000541738.5:ENST00000409957.5:ENST00000409936.5:ENST00000409272.5:ENST00000260648.10:ENST00000410081.5:ENST00000378520.7:ENST00000378511.7:ENST00000540817.1:ENST00000438314.1:ENST00000477410.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	46	2	2.05154	2.124815	2.19809	0.0336015	0.020317	0.134145	0.121522
chr20	45077549	45077647	7279581	0	+	0.5	(0.476,0.515]	chr20	740107	25	UTR3	UTR3:EXON_MRNA	STK4	ENSG00000101109.12	ENST00000499879.6:ENST00000372806.8	protein_coding	protein_coding	protein_coding	protein_coding	4	46	2	2.05154	2.124815	2.19809	0.0336015	0.020317	0.134145	0.121522
chr12	62595126	62595225	5152490	0	+	0.424242	(0.408,0.44]	chr12	487659	25	UTR3	UTR3:EXON_MRNA	MON2	ENSG00000061987.16	ENST00000641654.1:ENST00000393630.8	protein_coding	protein_coding	protein_coding	protein_coding	6	64	2	1.84301	2.12481	2.40661	0.0174311	0.011475	0.112689	0.0888882
chr17	64518024	64518123	6662010	0	+	0.50505	(0.476,0.515]	chr17	650211	8	INTRON	INTRON	CEP95	ENSG00000258890.8	ENST00000579860.5:ENST00000580188.1:ENST00000556440.7:ENST00000553956.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	95	2	1.83634	2.12481	2.41328	0.00949158	0.00355364	0.0817766	0.0547657
chr9	130731854	130731954	4214043	0	+	0.24	[0,0.28]	chr9	386427	170	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000393293.4	protein_coding	protein_coding	protein_coding	protein_coding	3	51	2	1.812	2.124805	2.43761	0.0729149	0.0423864	0.189235	0.161744
chrX	103679742	103679841	7856510	0	-	0.454545	(0.44,0.476]	chrX	801086	7	INTRON	INTRON	MORF4L2	ENSG00000123562.18	ENST00000360458.5:ENST00000441076.7:ENST00000433176.6:ENST00000451301.5:ENST00000434230.5:ENST00000418819.5:ENST00000442614.5:ENST00000492116.5:ENST00000422355.5:ENST00000474653.5:ENST00000498064.1:ENST00000467755.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	19	150	2	1.11653	2.124785	3.13304	0.0381009	1.45293e-4	0.157817	0.0110154
chr19	19866499	19866598	7036705	0	+	0.515152	(0.476,0.515]	chr19	701586	1	INTRON	INTRON	ZNF253	ENSG00000256771.5	ENST00000589717.2:ENST00000592725.1:ENST00000355650.4:ENST00000589668.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	64	2	1.58842	2.12477	2.66112	0.0406588	0.0044598	0.161534	0.0592169
chr1	193154169	193154268	284941	0	+	0.333333	(0.32,0.35]	chr1	32809	11	INTRON	INTRON	CDC73	ENSG00000134371.14	ENST00000649895.1:ENST00000643006.1:ENST00000367435.5:ENST00000650197.1:ENST00000648071.1:ENST00000635846.1:ENST00000649606.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	40	2	2.01768	2.1247499999999997	2.23182	0.068598	0.0361337	0.184298	0.152563
chr11	43425669	43425769	4777233	0	+	0.35	(0.32,0.35]	chr11	441769	105	INTRON	INTRON	TTC17	ENSG00000052841.15	ENST00000039989.9:ENST00000299240.10:ENST00000526774.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	40	2	2.01768	2.1247499999999997	2.23182	0.068598	0.0361337	0.184298	0.152563
chr16	68114389	68114489	6370514	0	+	0.34	(0.32,0.35]	chr16	612188	248	INTRON	INTRON	ENSG00000261864:NFATC3	ENSG00000261864.1:ENSG00000072736.19	ENST00000548144.1:ENST00000563319.5:ENST00000569766.5:ENST00000553077.5:ENST00000566301.5:ENST00000549350.5:ENST00000566893.5:ENST00000575270.5:ENST00000561714.5:ENST00000346183.8:ENST00000568466.6:ENST00000539828.6:ENST00000562171.1:ENST00000349223.9:ENST00000329524.8:ENST00000379165.8:ENST00000562926.5:ENST00000570212.5:ENST00000563796.5:ENST00000567152.5:ENST00000563288.5:ENST00000535127.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA:processed_transcript	3	40	2	2.01768	2.1247499999999997	2.23182	0.068598	0.0361337	0.184298	0.152563
chr19	8479193	8479292	7011120	0	+	0.484848	(0.476,0.515]	chr19	696197	46	INTRON	INTRON	HNRNPM	ENSG00000099783.12	ENST00000348943.7:ENST00000600092.5:ENST00000325495.9:ENST00000600806.5:ENST00000620401.4:ENST00000594907.5:ENST00000597270.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	78	2	1.79341	2.124695	2.45598	0.009837	0.00945755	0.0877296	0.0817766
chr12	68643929	68644028	5161538	0	+	0.272727	[0,0.28]	chr12	488591	24	INTRON	INTRON	RAP1B	ENSG00000127314.18	ENST00000460800.5:ENST00000393436.9:ENST00000250559.14:ENST00000425247.6:ENST00000501412.2:ENST00000450214.6:ENST00000463493.5:ENST00000537460.5:ENST00000341355.9:ENST00000538283.5:ENST00000541167.5:ENST00000422358.6:ENST00000489473.6:ENST00000545270.5:ENST00000538980.5:ENST00000543393.5:ENST00000542018.5:ENST00000540209.5:ENST00000378985.7:ENST00000453560.6:ENST00000534899.5:ENST00000542145.5:ENST00000539091.5:ENST00000535492.5:ENST00000540781.5:ENST00000485252.6:ENST00000538877.5:ENST00000541386.5:ENST00000543697.5:ENST00000545720.6:ENST00000541216.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	114	2	1.91746	2.12468	2.3319	0.0323084	0.00345409	0.132921	0.0539802
chr16	30196116	30196213	6337020	0	+	0.494845	(0.476,0.515]	chr16	607295	5	INTRON	INTRON	SLX1A	ENSG00000132207.18	ENST00000251303.11:ENST00000565081.1:ENST00000345535.8:ENST00000563995.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	35	2	1.86492	2.12467	2.38442	0.0550347	0.0417472	0.165463	0.161736
chr16	30329089	30329188	6473308	0	-	0.515152	(0.476,0.515]	chr16	625713	228	INTRON	INTRON	SMG1P5	ENSG00000183604.15	ENST00000529428.5:ENST00000411546.4:ENST00000691460.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	3	35	2	1.86492	2.12467	2.38442	0.0550347	0.0417472	0.165463	0.161736
chr20	58666600	58666700	7290327	0	+	0.5	(0.476,0.515]	chr20	741715	66	INTRON	INTRON	STX16	ENSG00000124222.22	ENST00000361830.7:ENST00000355957.9:ENST00000458280.5:ENST00000312283.12:ENST00000412911.5:ENST00000371141.8:ENST00000359617.8:ENST00000460655.5:ENST00000476384.5:ENST00000483434.5:ENST00000496117.5:ENST00000490700.5:ENST00000371132.8:ENST00000496003.5:ENST00000467096.5:ENST00000358029.8:ENST00000464640.5:ENST00000493301.5:ENST00000468590.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	35	2	1.86492	2.12467	2.38442	0.0550347	0.0417472	0.165463	0.161736
chr7	92204098	92204198	3569716	0	-	0.5	(0.476,0.515]	chr7	332509	1	PRIMIRNA	PRIMIRNA:INTRON	ENSG00000289027:KRIT1:MIR1285-1	ENSG00000289027.1:ENSG00000001631.17:ENSG00000221520.1	ENST00000692281.1:ENST00000693096.1:ENST00000688180.1:ENST00000394507.5:ENST00000692807.1:ENST00000340022.6:ENST00000394505.7:ENST00000486261.5:ENST00000458177.7:ENST00000684808.1:ENST00000444960.6:ENST00000691239.1:ENST00000686094.1:ENST00000686527.1:ENST00000690529.1:ENST00000689411.1:ENST00000688665.1:ENST00000692157.1:ENST00000686043.1:ENST00000690720.1:ENST00000692690.1:ENST00000690908.1:ENST00000691827.1:ENST00000690751.1:ENST00000425073.2:ENST00000687876.1:ENST00000690904.1:ENST00000688781.1:ENST00000686785.1:ENST00000689556.1:ENST00000688314.1:ENST00000688404.1:ENST00000690292.1:ENST00000687135.1:ENST00000689082.1:ENST00000686149.1:ENST00000475770.6:ENST00000454017.6:ENST00000692361.1:ENST00000689778.1:ENST00000686619.1:ENST00000688766.1:ENST00000688580.1:ENST00000693563.1:ENST00000685431.1:ENST00000689539.1:ENST00000412043.6:ENST00000394503.6:ENST00000433016.6:ENST00000445516.2:ENST00000686233.1:ENST00000408593.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:primary_miRNA	3	35	2	1.86492	2.12467	2.38442	0.0550347	0.0417472	0.165463	0.161736
chr9	137658121	137658221	4223867	0	+	0.51	(0.476,0.515]	chr9	388170	67	INTRON	INTRON	EHMT1	ENSG00000181090.21	ENST00000462484.5:ENST00000371394.6:ENST00000630754.2:ENST00000460843.6:ENST00000626216.2:ENST00000629335.2:ENST00000637335.1:ENST00000636376.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	35	2	1.86492	2.12467	2.38442	0.0550347	0.0417472	0.165463	0.161736
chr12	119680724	119680824	5234968	0	+	0.46	(0.44,0.476]	chr12	496719	5	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	PRKAB1	ENSG00000111725.11	ENST00000541640.5:ENST00000229328.10:ENST00000540121.5:ENST00000542698.1:ENST00000537057.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	64	2	1.65297	2.124645	2.59632	0.0331814	0.00579248	0.145918	0.0662959
chr16	89413456	89413554	6542824	0	-	0.561224	(0.515,0.57]	chr16	634260	5	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000647238.1:ENST00000644045.1:ENST00000643147.1:ENST00000644139.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	55	2	1.37301	2.124635	2.87626	0.0752392	0.00136224	0.193891	0.0339121
chr5	95746637	95746736	2431396	0	+	0.333333	(0.32,0.35]	chr5	233646	92	INTRON	INTRON	RHOBTB3	ENSG00000164292.13	ENST00000504949.1:ENST00000506959.5:ENST00000379982.8:ENST00000510623.1:ENST00000502541.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	75	2	1.42542	2.124635	2.82385	0.0718205	0.00217392	0.187046	0.043502
chr1	193022425	193022525	612489	0	-	0.47	(0.44,0.476]	chr1	72443	1	SS5_PROX	SS5_PROX:INTRON	UCHL5	ENSG00000116750.14	ENST00000367455.8:ENST00000367454.6:ENST00000420791.5:ENST00000449480.5:ENST00000367450.7:ENST00000367451.8:ENST00000367449.5:ENST00000367448.5:ENST00000443327.5:ENST00000416915.1	protein_coding	protein_coding	protein_coding	protein_coding	5	56	2	1.85904	2.124535	2.39003	0.029889	0.0106488	0.129138	0.0915714
chr8	101195653	101195753	4006175	0	-	0.32	(0.28,0.32]	chr8	366709	169	INTRON	INTRON	ZNF706	ENSG00000120963.12	ENST00000520984.5:ENST00000518071.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	54	2	1.98806	2.12448	2.2609	0.0671429	0.0199553	0.183051	0.120668
chr4	73214783	73214883	2160386	0	-	0.36	(0.35,0.378]	chr4	212794	369	INTRON	INTRON	ANKRD17	ENSG00000132466.20	ENST00000358602.9:ENST00000558247.5:ENST00000330838.10:ENST00000509867.6:ENST00000561029.1:ENST00000559367.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	126	2	1.50831	2.124455	2.7406	0.0277212	3.25081e-4	0.123904	0.0160177
chr5	134779476	134779572	2490589	0	+	0.427083	(0.408,0.44]	chr5	237905	14	INTRON	INTRON	DDX46	ENSG00000145833.16	ENST00000628477.2:ENST00000452510.7:ENST00000507392.5:ENST00000354283.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	130	2	1.49462	2.12445	2.75428	0.027357	1.21542e-4	0.123904	0.00942499
chrX	154796759	154796859	7915524	0	-	0.43	(0.408,0.44]	chrX	806172	41	INTRON	INTRON	MPP1	ENSG00000130830.15	ENST00000369534.8:ENST00000413259.7:ENST00000439370.5:ENST00000393531.5:ENST00000453245.5:ENST00000494170.1:ENST00000462825.5:ENST00000393529.5:ENST00000475943.5:ENST00000428488.1:ENST00000417435.5:ENST00000369531.1:ENST00000471821.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	65	2	1.46762	2.1244199999999998	2.78122	0.0267854	0.015812	0.134871	0.101453
chr12	56597447	56597544	5335278	0	-	0.360825	(0.35,0.378]	chr12	509966	20	UTR3	UTR3:EXON_MRNA	BAZ2A	ENSG00000076108.12	ENST00000379441.7:ENST00000549884.6:ENST00000551812.5	protein_coding	protein_coding	protein_coding	protein_coding	11	126	2	1.81512	2.12441	2.4337	0.00699907	0.00216531	0.0754576	0.0417866
chr13	24893664	24893763	5563383	0	-	0.323232	(0.32,0.35]	chr13	531735	4	INTRON	INTRON	CENPJ	ENSG00000151849.16	ENST00000381884.9:ENST00000616936.4:ENST00000545981.6:ENST00000418179.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	48	2	1.61669	2.124395	2.6321	0.0578816	0.0268	0.188651	0.123349
chr4	126618690	126618790	2236896	0	-	0.33	(0.32,0.35]	chr4	219023	1532	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	7	85	2	2.02448	2.124385	2.22429	0.0226421	0.00595393	0.117557	0.0698475
chr6	24707992	24708086	3070611	0	-	0.414894	(0.408,0.44]	chr6	285346	14	INTRON	INTRON	C6orf62	ENSG00000112308.13	ENST00000378119.9:ENST00000378102.3	protein_coding	protein_coding	protein_coding	protein_coding	12	124	2	1.61114	2.12431	2.63748	0.0148616	5.0683e-4	0.0989021	0.0202328
chr1	234472313	234472413	661367	0	-	0.42	(0.408,0.44]	chr1	78257	2	SS5_PROX	SS5_PROX:INTRON	TARBP1	ENSG00000059588.10	ENST00000040877.2	protein_coding	protein_coding	protein_coding	protein_coding	6	69	2	1.64062	2.124235	2.60785	0.0557275	0.00146754	0.165463	0.035104
chr3	9409525	9409625	1359003	0	+	0.38	(0.378,0.408]	chr3	142655	112	INTRON	INTRON	SETD5	ENSG00000168137.20	ENST00000402198.7:ENST00000431285.5:ENST00000683012.1:ENST00000463180.5:ENST00000478475.5:ENST00000415650.5:ENST00000682536.1:ENST00000663774.1:ENST00000665872.1:ENST00000666307.1:ENST00000693430.1:ENST00000691925.1:ENST00000684606.1:ENST00000691175.1:ENST00000688835.1:ENST00000683262.1:ENST00000443339.5:ENST00000406341.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	105	2	1.91219	2.12419	2.33619	0.00607113	0.00434774	0.0676501	0.0602259
chr2	15516648	15516748	1072715	0	-	0.46	(0.44,0.476]	chr2	114441	49	INTRON	INTRON	NBAS	ENSG00000151779.13	ENST00000281513.10	protein_coding	protein_coding	protein_coding	protein_coding	17	174	2	2.01674	2.124105	2.23147	0.00172509	9.36476e-4	0.0374701	0.0279503
chr8	91082814	91082913	3797124	0	+	0.434343	(0.408,0.44]	chr8	351901	17	INTRON	INTRON	OTUD6B	ENSG00000155100.11	ENST00000285420.8:ENST00000617869.4:ENST00000615618.1:ENST00000522894.5:ENST00000404789.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	64	2	1.79818	2.124105	2.45003	0.020428	0.00990006	0.122109	0.0838372
chr17	39921134	39921228	6767467	0	-	0.585106	(0.57,1]	chr17	665677	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ORMDL3	ENSG00000172057.10	ENST00000579695.5:ENST00000304046.7:ENST00000579287.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	26	2	1.71424	2.124035	2.53383	0.0279017	0.02547	0.137011	0.12011
chr14	30670595	30670695	5675535	0	+	0.38	(0.378,0.408]	chr14	540698	2	SS5_PROX	SS5_PROX:INTRON	SCFD1	ENSG00000092108.22	ENST00000678760.1:ENST00000677690.1:ENST00000678124.1:ENST00000678716.1:ENST00000678402.1:ENST00000679153.1:ENST00000678516.1:ENST00000678802.1:ENST00000679096.1:ENST00000679102.1:ENST00000678475.1:ENST00000676509.1:ENST00000676750.1:ENST00000679165.1:ENST00000676658.1:ENST00000678399.1:ENST00000678185.1:ENST00000677027.1:ENST00000678006.1:ENST00000677413.1:ENST00000555259.5:ENST00000554437.6:ENST00000676834.1:ENST00000678858.1:ENST00000553693.6:ENST00000676914.1:ENST00000676465.1:ENST00000676812.1:ENST00000678669.1:ENST00000676520.1:ENST00000676876.1:ENST00000677617.1:ENST00000676954.1:ENST00000677456.1:ENST00000678735.1:ENST00000679342.1:ENST00000678637.1:ENST00000677176.1:ENST00000557076.6:ENST00000677637.1:ENST00000677974.1:ENST00000458591.7:ENST00000484733.6:ENST00000556768.5:ENST00000544052.6:ENST00000463622.6:ENST00000676674.1:ENST00000677340.1:ENST00000311943.11:ENST00000679075.1:ENST00000678396.1:ENST00000676473.1:ENST00000396629.6:ENST00000678579.1:ENST00000678104.1:ENST00000554819.5:ENST00000553278.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	36	2	2.11103	2.1240300000000003	2.13703	0.0797592	0.0266911	0.19979	0.134419
chr1	31934392	31934491	414398	0	-	0.373737	(0.35,0.378]	chr1	49936	13	INTRON	INTRON	PTP4A2	ENSG00000184007.22	ENST00000647444.2:ENST00000649841.1:ENST00000468531.1:ENST00000534796.5:ENST00000532289.1:ENST00000526960.1:ENST00000524384.5:ENST00000528840.1:ENST00000494444.2:ENST00000529477.5:ENST00000533408.1:ENST00000475464.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	53	2	1.77736	2.124005	2.47065	0.0386172	0.0225073	0.142656	0.124921
chr16	24206911	24207010	6327495	0	+	0.454545	(0.44,0.476]	chr16	605804	33	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1	protein_coding	protein_coding	protein_coding	protein_coding	4	47	2	2.00609	2.12399	2.24189	0.0360127	0.0193405	0.152355	0.108861
chr7	127348840	127348939	3633801	0	-	0.282828	(0.28,0.32]	chr7	337745	4	INTRON	INTRON	ZNF800	ENSG00000048405.11	ENST00000485577.1	protein_coding	processed_transcript	protein_coding	processed_transcript	3	45	2	1.86684	2.123925	2.38101	0.0605813	0.0456017	0.171122	0.164236
chr2	55038917	55039017	1121294	0	-	0.35	(0.32,0.35]	chr2	120163	103	INTRON	INTRON	RTN4	ENSG00000115310.19	ENST00000404909.5:ENST00000394611.6:ENST00000317610.11:ENST00000357732.8:ENST00000337526.11:ENST00000357376.7:ENST00000405240.5:ENST00000438462.1:ENST00000427710.5	protein_coding	protein_coding	protein_coding	protein_coding	8	78	2	1.61555	2.123825	2.6321	0.0268	0.0165587	0.123349	0.110511
chr1	88705812	88705912	155984	0	+	0.3	(0.28,0.32]	chr1	17045	208	INTRON	INTRON	PKN2	ENSG00000065243.20	ENST00000316005.11:ENST00000370521.8:ENST00000370513.9	protein_coding	protein_coding	protein_coding	protein_coding	5	71	2	2.1076	2.1238099999999998	2.14002	0.0304107	0.0133585	0.130461	0.100772
chr9	135481205	135481303	4221043	0	+	0.418367	(0.408,0.44]	chr9	387429	8	INTRON	INTRON	PPP1R26	ENSG00000196422.11	ENST00000605286.5:ENST00000604351.5:ENST00000652373.1:ENST00000356818.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	47	2	1.74775	2.12379	2.49983	0.0735403	0.00713527	0.190238	0.0756118
chr2	171110257	171110357	1263591	0	-	0.48	(0.476,0.515]	chr2	133913	186	INTRON	INTRON	TLK1	ENSG00000198586.14	ENST00000431350.7:ENST00000360843.7:ENST00000359766.7:ENST00000521943.5:ENST00000409443.6:ENST00000413010.5:ENST00000470340.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	41	2	1.61586	2.12377	2.63168	0.0567093	0.0237106	0.185107	0.118716
chr3	129174451	129174551	1815235	0	-	0.5	(0.476,0.515]	chr3	182484	23	INTRON	INTRON	CNBP	ENSG00000169714.17	ENST00000422453.7:ENST00000502976.5:ENST00000451728.6:ENST00000446936.6:ENST00000504813.5:ENST00000500450.6:ENST00000441626.6:ENST00000502372.1:ENST00000512338.1:ENST00000507573.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	41	2	1.61586	2.12377	2.63168	0.0567093	0.0237106	0.185107	0.118716
chr4	150955046	150955146	2271169	0	-	0.48	(0.476,0.515]	chr4	220921	256	INTRON	INTRON	LRBA	ENSG00000198589.14	ENST00000357115.9:ENST00000651943.2:ENST00000510413.5:ENST00000651035.1:ENST00000507224.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	41	2	1.61586	2.12377	2.63168	0.0567093	0.0237106	0.185107	0.118716
chr16	70672112	70672212	6512047	0	-	0.53	(0.515,0.57]	chr16	630830	62	INTRON	INTRON	MTSS2	ENSG00000132613.16	ENST00000338779.11	protein_coding	protein_coding	protein_coding	protein_coding	5	48	2	1.91916	2.12376	2.32836	0.0231902	0.0126662	0.118148	0.0982897
chr19	3962398	3962491	7118966	0	-	0.365591	(0.35,0.378]	chr19	716025	7	INTRON	INTRON	DAPK3	ENSG00000167657.14	ENST00000545797.7:ENST00000301264.7	protein_coding	protein_coding	protein_coding	protein_coding	5	61	2	1.6122	2.123735	2.63527	0.0616849	0.00443588	0.174021	0.061054
chr3	180947165	180947264	1568955	0	+	0.484848	(0.476,0.515]	chr3	162382	116	INTRON	INTRON	FXR1	ENSG00000114416.18	ENST00000469882.5:ENST00000484790.5:ENST00000465551.5:ENST00000305586.11:ENST00000475315.5:ENST00000357559.9:ENST00000468861.5:ENST00000491062.5:ENST00000479176.5:ENST00000445140.6:ENST00000472339.5:ENST00000484958.5:ENST00000480918.5:ENST00000484042.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	53	2	1.48272	2.12366	2.7646	0.0410274	0.0162075	0.161534	0.101453
chr4	55398922	55399004	1960618	0	+	0.317073	(0.28,0.32]	chr4	196543	1	EXON_LNCRNA	EXON_LNCRNA:INTRON	TMEM165	ENSG00000134851.13	ENST00000381334.10:ENST00000506198.5:ENST00000508404.5:ENST00000511710.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	27	310	2	1.61832	2.123655	2.62899	0.00402262	4.62329e-4	0.0578376	0.0198646
chr12	123208558	123208658	5443812	0	-	0.33	(0.32,0.35]	chr12	520832	48	INTRON	INTRON	MPHOSPH9	ENSG00000051825.15	ENST00000606320.6:ENST00000541076.6:ENST00000545556.6:ENST00000302373.8:ENST00000539024.5:ENST00000539336.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	83	2	1.787	2.123635	2.46027	0.0151818	0.0108973	0.108535	0.0873034
chr1	1767438	1767538	361626	0	-	0.4	(0.378,0.408]	chr1	42219	16	INTRON	INTRON	NADK	ENSG00000008130.15	ENST00000378625.5:ENST00000341991.7:ENST00000341426.9:ENST00000492845.6:ENST00000492768.5:ENST00000460602.5:ENST00000464373.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	50	2	1.89621	2.12362	2.35103	0.0488044	0.014158	0.173377	0.0959618
chr11	47833360	47833459	4952015	0	-	0.535354	(0.515,0.57]	chr11	464617	58	INTRON	INTRON	NUP160	ENSG00000030066.14	ENST00000694866.1:ENST00000378460.7:ENST00000530326.5:ENST00000528071.5:ENST00000528501.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	40	2	1.79136	2.123605	2.45585	0.0638444	0.00797827	0.177811	0.0798772
chr7	148871179	148871273	3670632	0	-	0.425532	(0.408,0.44]	chr7	340631	5	UTR5	UTR5:EXON_MRNA:INTRON	EZH2	ENSG00000106462.12	ENST00000683292.1:ENST00000320356.7:ENST00000492143.5:ENST00000478654.5:ENST00000350995.6:ENST00000460911.5:ENST00000683744.1:ENST00000682317.1:ENST00000682263.1:ENST00000684300.1:ENST00000476773.5:ENST00000483967.5:ENST00000498186.5:ENST00000483012.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	141	2	1.87885	2.1235749999999998	2.3683	0.00827079	3.96367e-4	0.0774402	0.0178651
chr6	152978793	152978892	3249633	0	-	0.454545	(0.44,0.476]	chr6	301947	28	INTRON	INTRON	FBXO5	ENSG00000112029.10	ENST00000367241.3:ENST00000229758.8	protein_coding	protein_coding	protein_coding	protein_coding	5	49	2	1.42812	2.12354	2.81896	0.0673866	0.0120766	0.183355	0.0962311
chr7	100348627	100348725	3364465	0	+	0.5	(0.476,0.515]	chr7	314647	23	INTRON	INTRON	STAG3L5P:STAG3L5P-PVRIG2P-PILRB	ENSG00000242294.6:ENSG00000272752.6	ENST00000473757.5:ENST00000470714.5:ENST00000310771.8:ENST00000483329.6:ENST00000444874.5:ENST00000488972.6:ENST00000493499.1	lncRNA	retained_intron	lncRNA:transcribed_unprocessed_pseudogene	retained_intron:lncRNA:processed_transcript	13	120	2	1.20452	2.123485	3.04245	0.04391	2.24944e-4	0.162255	0.013767
chr22	21595856	21595956	7481986	0	+	0.46	(0.44,0.476]	chr22	763238	25	INTRON	INTRON	UBE2L3	ENSG00000185651.16	ENST00000458578.6:ENST00000545681.2:ENST00000696046.1:ENST00000342192.9:ENST00000496722.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	129	2	1.9037	2.12333	2.34296	0.00735504	7.10457e-4	0.0739587	0.0242715
chr1	61147626	61147726	128048	0	+	0.33	(0.32,0.35]	chr1	14778	147	INTRON	INTRON	NFIA	ENSG00000162599.17	ENST00000371191.5:ENST00000664495.1:ENST00000476646.5:ENST00000407417.7:ENST00000479364.1:ENST00000371189.8:ENST00000670151.1:ENST00000664149.1:ENST00000662015.1:ENST00000403491.8:ENST00000371187.7:ENST00000485903.6:ENST00000371185.6:ENST00000371184.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	84	2	1.49732	2.12331	2.7493	0.0455974	0.00296357	0.149888	0.0500135
chr17	62040886	62040985	6810636	0	-	0.444444	(0.44,0.476]	chr17	672946	49	INTRON	INTRON	MED13	ENSG00000108510.10	ENST00000397786.7	protein_coding	protein_coding	protein_coding	protein_coding	16	122	2	1.39862	2.12331	2.848	0.0138251	0.00215274	0.10247	0.0417866
chr1	160316701	160316800	572046	0	-	0.40404	(0.378,0.408]	chr1	69341	22	INTRON	INTRON	COPA	ENSG00000122218.17	ENST00000241704.8:ENST00000696204.1:ENST00000696203.1:ENST00000696202.1:ENST00000649963.1:ENST00000696208.1:ENST00000696207.1:ENST00000696206.1:ENST00000649676.1:ENST00000368069.7:ENST00000647693.1:ENST00000649787.1:ENST00000650154.1:ENST00000647799.1:ENST00000648805.1:ENST00000647683.1:ENST00000649231.1:ENST00000648501.1:ENST00000696209.1:ENST00000696210.1:ENST00000696211.1:ENST00000647899.1:ENST00000696212.1:ENST00000696214.1:ENST00000696213.1:ENST00000696215.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	49	2	1.45712	2.12329	2.78946	0.0597975	0.0158859	0.189982	0.101453
chr19	29955587	29955687	7047687	0	+	0.34	(0.32,0.35]	chr19	702657	126	INTRON	INTRON	URI1	ENSG00000105176.18	ENST00000360605.8:ENST00000570564.5:ENST00000574233.5:ENST00000392271.6:ENST00000574110.5:ENST00000574666.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	48	2	1.67393	2.1232800000000003	2.57263	0.0496128	0.0312297	0.174685	0.13151
chr3	9997624	9997724	1362078	0	+	0.49	(0.476,0.515]	chr3	143402	34	INTRON	INTRON	EMC3-AS1	ENSG00000180385.9	ENST00000692142.1:ENST00000366264.6:ENST00000693066.1:ENST00000326237.3:ENST00000440568.1:ENST00000424904.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	15	165	2	1.77513	2.12323	2.47133	0.00617221	3.32043e-4	0.0713211	0.0169003
chr7	101826473	101826573	3366453	0	+	0.48	(0.476,0.515]	chr7	315215	71	INTRON	INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000497815.5:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000607092.1:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000558469.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	11	119	2	1.91202	2.1232249999999997	2.33443	0.00593312	0.00160781	0.0696183	0.0365246
chr7	140470586	140470685	3661538	0	-	0.454545	(0.44,0.476]	chr7	339916	100	INTRON	INTRON	MKRN1	ENSG00000133606.11	ENST00000255977.7:ENST00000475010.5:ENST00000495305.5:ENST00000474576.5:ENST00000480552.5:ENST00000496169.5:ENST00000443720.6:ENST00000471104.5:ENST00000467513.5:ENST00000494939.1:ENST00000498535.1:ENST00000473444.1:ENST00000475180.5:ENST00000481705.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	14	150	2	1.92652	2.123215	2.31991	0.00669501	3.60728e-4	0.0707084	0.0169463
chr1	42224991	42225090	431328	0	-	0.545455	(0.515,0.57]	chr1	52305	188	INTRON	INTRON	FOXJ3	ENSG00000198815.9	ENST00000372573.5:ENST00000372572.5:ENST00000361776.5:ENST00000545068.5:ENST00000361346.6:ENST00000445886.5	protein_coding	protein_coding	protein_coding	protein_coding	4	40	2	2.03361	2.12317	2.21273	0.0325854	0.0196151	0.145164	0.109486
chr12	56684184	56684283	5336040	0	-	0.333333	(0.32,0.35]	chr12	510192	108	INTRON	INTRON	PTGES3	ENSG00000110958.16	ENST00000537473.2:ENST00000614328.4:ENST00000262033.11:ENST00000414274.7:ENST00000436399.6:ENST00000448157.6:ENST00000456859.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	79	2	1.77409	2.123145	2.4722	0.0414296	0.00307237	0.146067	0.0509893
chr16	58625490	58625588	6496342	0	-	0.408163	(0.378,0.408]	chr16	628651	3	INTRON	INTRON	CNOT1	ENSG00000125107.19	ENST00000317147.10:ENST00000569240.5:ENST00000567188.5:ENST00000441024.6:ENST00000565605.5:ENST00000564557.1:ENST00000569916.1:ENST00000569020.5:ENST00000568158.1:ENST00000569263.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	58	2	1.73164	2.1231400000000002	2.51464	0.0441773	0.00684341	0.149888	0.0748032
chr2	32221307	32221406	730350	0	+	0.494949	(0.476,0.515]	chr2	84231	7	UTR3	UTR3:EXON_MRNA	SLC30A6	ENSG00000152683.14	ENST00000357055.7:ENST00000435660.5:ENST00000282587.9:ENST00000449777.5:ENST00000454324.5:ENST00000379343.6:ENST00000406369.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	13	139	2	2.02745	2.12303	2.21861	0.00310396	0.00138145	0.0498063	0.0341261
chr7	12358304	12358401	3484961	0	-	0.515464	(0.515,0.57]	chr7	325880	4	INTRON	INTRON	VWDE	ENSG00000146530.15	ENST00000275358.8:ENST00000452576.6:ENST00000521169.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	91	2	1.86103	2.122985	2.38494	0.00757303	0.00164178	0.0749063	0.0373835
chr14	61714981	61715077	5905806	0	-	0.46875	(0.44,0.476]	chr14	561049	6	INTRON	INTRON	HIF1A-AS3	ENSG00000258667.2	ENST00000660325.1	lncRNA	lncRNA	lncRNA	lncRNA	8	87	2	1.62674	2.12285	2.61896	0.0253995	0.0017827	0.133676	0.0379201
chr7	148865103	148865203	3670571	0	-	0.29	(0.28,0.32]	chr7	340628	174	INTRON	INTRON	EZH2	ENSG00000106462.12	ENST00000683292.1:ENST00000320356.7:ENST00000492143.5:ENST00000478654.5:ENST00000350995.6:ENST00000460911.5:ENST00000683744.1:ENST00000682317.1:ENST00000682263.1:ENST00000684300.1:ENST00000476773.5:ENST00000483967.5:ENST00000498186.5:ENST00000483012.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	120	2	2.01298	2.122605	2.23223	0.0109124	0.0046492	0.0873034	0.0629753
chr10	7301750	7301850	4551840	0	-	0.5	(0.476,0.515]	chr10	420230	154	INTRON	INTRON	SFMBT2	ENSG00000198879.13	ENST00000397167.6:ENST00000361972.8:ENST00000684547.1:ENST00000683762.1:ENST00000673876.1:ENST00000682896.1:ENST00000379713.8:ENST00000682101.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	34	2	1.8388	2.12244	2.40608	0.0564473	0.0425709	0.184423	0.148082
chr13	100247195	100247295	5529130	0	+	0.5	(0.476,0.515]	chr13	528508	98	INTRON	INTRON	PCCA	ENSG00000175198.17	ENST00000376286.8:ENST00000376279.7:ENST00000376285.6:ENST00000647303.1:ENST00000637657.1:ENST00000636366.1:ENST00000636475.1:ENST00000636420.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	34	2	1.8388	2.12244	2.40608	0.0564473	0.0425709	0.184423	0.148082
chr17	687501	687601	6698296	0	-	0.48	(0.476,0.515]	chr17	655368	11	INTRON	INTRON	VPS53	ENSG00000141252.21	ENST00000437048.7:ENST00000680465.1:ENST00000681661.1:ENST00000680872.1:ENST00000681317.1:ENST00000680641.1:ENST00000681946.1:ENST00000681917.1:ENST00000573028.5:ENST00000571805.6:ENST00000681478.1:ENST00000680128.1:ENST00000291074.10:ENST00000389040.9:ENST00000401468.7:ENST00000680704.1:ENST00000680069.1:ENST00000681902.1:ENST00000679361.1:ENST00000681154.1:ENST00000680274.1:ENST00000681229.1:ENST00000681035.1:ENST00000681133.1:ENST00000576019.6:ENST00000679961.1:ENST00000575207.6:ENST00000680970.1:ENST00000680241.1:ENST00000681423.1:ENST00000572259.2:ENST00000575100.2:ENST00000681295.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	34	2	1.8388	2.12244	2.40608	0.0564473	0.0425709	0.184423	0.148082
chr20	32374549	32374649	7255988	0	+	0.5	(0.476,0.515]	chr20	737076	21	INTRON	INTRON	ASXL1	ENSG00000171456.21	ENST00000651418.1:ENST00000375687.10:ENST00000613218.4:ENST00000644587.1:ENST00000620121.4:ENST00000646985.1:ENST00000643168.1:ENST00000306058.9:ENST00000645688.1:ENST00000470145.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	34	2	1.8388	2.12244	2.40608	0.0564473	0.0425709	0.184423	0.148082
chr20	47307275	47307374	7349015	0	-	0.484848	(0.476,0.515]	chr20	749336	80	INTRON	INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000468376.2:ENST00000435836.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	34	2	1.8388	2.12244	2.40608	0.0564473	0.0425709	0.184423	0.148082
chr20	58365630	58365728	7289522	0	+	0.5	(0.476,0.515]	chr20	741657	61	UTR3	UTR3:EXON_MRNA	RAB22A	ENSG00000124209.4	ENST00000244040.4	protein_coding	protein_coding	protein_coding	protein_coding	3	34	2	1.8388	2.12244	2.40608	0.0564473	0.0425709	0.184423	0.148082
chr4	82858086	82858175	2179751	0	-	0.494382	(0.476,0.515]	chr4	214318	2	SS3_PROX	SS3_PROX:INTRON	SEC31A	ENSG00000138674.17	ENST00000395310.7:ENST00000513858.5:ENST00000348405.8:ENST00000448323.5:ENST00000311785.11:ENST00000509142.5:ENST00000443462.6:ENST00000500777.6:ENST00000505472.5:ENST00000355196.6:ENST00000508502.5:ENST00000264405.9:ENST00000505984.5:ENST00000508479.5:ENST00000507828.5:ENST00000512664.5:ENST00000510167.1:ENST00000512732.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	34	2	1.8388	2.12244	2.40608	0.0564473	0.0425709	0.184423	0.148082
chr7	1033337	1033436	3460791	0	-	0.515152	(0.476,0.515]	chr7	323579	51	INTRON	INTRON	C7orf50	ENSG00000146540.15	ENST00000357429.10:ENST00000397100.6:ENST00000397098.8:ENST00000488073.1:ENST00000444428.5:ENST00000491163.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	34	2	1.8388	2.12244	2.40608	0.0564473	0.0425709	0.184423	0.148082
chr7	158659902	158660002	3688325	0	-	0.49	(0.476,0.515]	chr7	342172	11	INTRON	INTRON	NCAPG2	ENSG00000146918.20	ENST00000356309.8:ENST00000432615.5:ENST00000409423.5:ENST00000441982.5:ENST00000467785.5:ENST00000409339.3:ENST00000474940.5:ENST00000475918.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	34	2	1.8388	2.12244	2.40608	0.0564473	0.0425709	0.184423	0.148082
chr8	23557308	23557408	3715383	0	+	0.51	(0.476,0.515]	chr8	345227	137	INTRON	INTRON	SLC25A37	ENSG00000147454.14	ENST00000519973.6:ENST00000290075.10:ENST00000417331.6:ENST00000518881.5:ENST00000520654.1:ENST00000523930.1:ENST00000523883.5:ENST00000517923.1:ENST00000520949.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	34	2	1.8388	2.12244	2.40608	0.0564473	0.0425709	0.184423	0.148082
chr9	135954613	135954703	4372503	0	-	0.444444	(0.44,0.476]	chr9	402547	5	INTRON	INTRON	UBAC1	ENSG00000130560.9	ENST00000371756.4:ENST00000478485.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	94	2	2.06139	2.122415	2.18344	0.0102102	0.00297288	0.0850389	0.0501309
chr14	102149564	102149664	5821379	0	+	0.33	(0.32,0.35]	chr14	552333	90	INTRON	INTRON	WDR20	ENSG00000140153.18	ENST00000557485.5:ENST00000335263.9:ENST00000424963.6:ENST00000322340.9:ENST00000556807.1:ENST00000555879.5:ENST00000561154.1:ENST00000342702.8:ENST00000558567.5:ENST00000299135.6:ENST00000454394.2:ENST00000556094.1:ENST00000556511.2:ENST00000557186.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	54	2	1.99307	2.1224	2.25173	0.04271	0.0180122	0.148082	0.114436
chr21	42858068	42858167	7467692	0	-	0.393939	(0.378,0.408]	chr21	760955	19	INTRON	INTRON	WDR4	ENSG00000160193.12	ENST00000330317.6:ENST00000476326.5:ENST00000398208.3:ENST00000492742.5:ENST00000479429.5:ENST00000463902.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	63	2	1.97143	2.12226	2.27309	0.0398704	0.00769587	0.161534	0.0754631
chr3	33838925	33839024	1394808	0	+	0.474747	(0.44,0.476]	chr3	146096	2	INTRON	INTRON	PDCD6IP	ENSG00000170248.15	ENST00000457054.6:ENST00000648706.1:ENST00000307296.8:ENST00000412887.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	64	2	1.64563	2.122255	2.59888	0.0363922	0.00487719	0.138959	0.0640618
chr5	88891371	88891469	2413858	0	+	0.418367	(0.408,0.44]	chr5	232587	13	INTRON	INTRON	MEF2C-AS1	ENSG00000248309.8	ENST00000511100.5:ENST00000688169.1:ENST00000685027.1:ENST00000514794.6:ENST00000512585.5:ENST00000686604.1:ENST00000688814.1:ENST00000513704.6:ENST00000508718.6:ENST00000514011.5:ENST00000509179.5:ENST00000684854.1:ENST00000691164.1:ENST00000689963.1:ENST00000690169.1:ENST00000514092.5:ENST00000685645.1:ENST00000691685.1:ENST00000684894.1:ENST00000692315.1:ENST00000511876.5:ENST00000687485.1:ENST00000514158.5	lncRNA	lncRNA	lncRNA	lncRNA	6	64	2	1.92871	2.12218	2.31565	0.0154718	0.0127189	0.100909	0.0986242
chr1	52882857	52882956	105317	0	+	0.30303	(0.28,0.32]	chr1	13774	8	INTRON	INTRON	ZYG11A	ENSG00000203995.10	ENST00000371532.5:ENST00000612017.4:ENST00000371528.2	protein_coding	protein_coding	protein_coding	protein_coding	4	59	2	2.05458	2.12204	2.1895	0.0381508	0.0227063	0.141764	0.124921
chr14	30987579	30987679	5857485	0	-	0.31	(0.28,0.32]	chr14	556508	232	INTRON	INTRON	STRN3	ENSG00000196792.12	ENST00000355683.9:ENST00000357479.10:ENST00000555358.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	86	2	1.79721	2.122005	2.4468	0.0408024	0.0037095	0.1451	0.0561833
chr7	152289274	152289374	3679815	0	-	0.3	(0.28,0.32]	chr7	341623	25	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000684262.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	86	2	1.79721	2.122005	2.4468	0.0408024	0.0037095	0.1451	0.0561833
chr2	55033118	55033218	1121236	0	-	0.42	(0.408,0.44]	chr2	120163	45	INTRON	INTRON	RTN4	ENSG00000115310.19	ENST00000404909.5:ENST00000394611.6:ENST00000317610.11:ENST00000357732.8:ENST00000337526.11:ENST00000357376.7:ENST00000405240.5:ENST00000438462.1:ENST00000427710.5	protein_coding	protein_coding	protein_coding	protein_coding	11	125	2	1.73753	2.1219349999999997	2.50634	0.0275537	1.75878e-4	0.123904	0.011551
chr16	1361206	1361304	6274258	0	+	0.387755	(0.378,0.408]	chr16	599253	7	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	GNPTG	ENSG00000090581.11	ENST00000204679.9:ENST00000526820.5:ENST00000683366.1:ENST00000527168.6:ENST00000683887.1:ENST00000529110.2:ENST00000684126.1:ENST00000529957.6:ENST00000527076.1:ENST00000684688.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	43	2	1.78011	2.1219200000000003	2.46373	0.0382831	0.0356367	0.151629	0.141795
chr19	10822149	10822247	7014842	0	+	0.397959	(0.378,0.408]	chr19	697032	17	INTRON	INTRON	DNM2	ENSG00000079805.19	ENST00000355667.11:ENST00000389253.9:ENST00000585892.5:ENST00000359692.10:ENST00000408974.8:ENST00000681972.1:ENST00000590806.5:ENST00000590787.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	43	2	1.78011	2.1219200000000003	2.46373	0.0382831	0.0356367	0.151629	0.141795
chr22	16607482	16607581	7473415	0	+	0.292929	(0.28,0.32]	chr22	761972	49	INTRON	INTRON	TPTEP1:ENSG00000283633	ENSG00000100181.22:ENSG00000283633.1	ENST00000558085.6:ENST00000400593.6:ENST00000592918.5:ENST00000592107.5:ENST00000426585.5:ENST00000591299.1	lncRNA	lncRNA	lncRNA:transcribed_unprocessed_pseudogene	lncRNA:processed_transcript	12	164	2	2.10412	2.121845	2.13957	0.00647448	0.00188821	0.0699952	0.0402736
chr16	23902548	23902648	6324426	0	+	0.48	(0.476,0.515]	chr16	605701	88	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000498739.1	protein_coding	protein_coding	protein_coding	protein_coding	8	87	2	1.99699	2.121765	2.24654	0.0110277	0.00346427	0.0873897	0.0539802
chr19	54203892	54203991	7098863	0	+	0.454545	(0.44,0.476]	chr19	711940	19	INTRON	INTRON	RPS9	ENSG00000170889.14	ENST00000484121.5:ENST00000448962.5:ENST00000302907.9:ENST00000626547.2:ENST00000436445.5:ENST00000391752.5:ENST00000402367.5:ENST00000445961.5:ENST00000391751.7:ENST00000495002.5:ENST00000391753.6:ENST00000441429.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	74	2	1.93084	2.12174	2.31264	0.0443175	0.00316873	0.162302	0.0503085
chr3	15854978	15855078	1624397	0	-	0.47	(0.44,0.476]	chr3	168034	403	INTRON	INTRON	ANKRD28	ENSG00000206560.12	ENST00000399451.6:ENST00000412318.5:ENST00000439830.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	77	2	1.49801	2.121735	2.74546	0.0300375	0.00326603	0.142135	0.0508595
chr6	28158371	28158470	2839495	0	+	0.444444	(0.44,0.476]	chr6	266538	45	UTR3	UTR3:EXON_MRNA	ZKSCAN8	ENSG00000198315.11	ENST00000330236.7	protein_coding	protein_coding	protein_coding	protein_coding	8	63	2	1.32393	2.121715	2.9195	0.0439888	0.0102021	0.162255	0.0850389
chr4	526638	526738	1907641	0	+	0.43	(0.408,0.44]	chr4	191165	2	SS3_PROX	SS3_PROX:INTRON	PIGG	ENSG00000174227.16	ENST00000453061.7:ENST00000310340.9:ENST00000504346.5:ENST00000383028.8:ENST00000508562.1:ENST00000508669.1:ENST00000503261.5:ENST00000510235.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	86	2	1.70477	2.12169	2.53861	0.0215835	0.00202413	0.114814	0.0416117
chr22	16791191	16791291	7546311	0	-	0.34	(0.32,0.35]	chr22	771315	64	INTRON	INTRON	XKR3	ENSG00000172967.8	ENST00000331428.5:ENST00000684488.1	protein_coding	protein_coding	protein_coding	protein_coding	9	109	2	1.85455	2.121685	2.38882	0.00835992	0.00566663	0.0821555	0.0653997
chr3	33829069	33829169	1394704	0	+	0.31	(0.28,0.32]	chr3	146076	1	SS5_PROX	SS5_PROX:INTRON	PDCD6IP	ENSG00000170248.15	ENST00000457054.6:ENST00000648706.1:ENST00000307296.8:ENST00000412887.5:ENST00000482561.1:ENST00000487821.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	71	2	2.09794	2.12164	2.14534	0.0340483	0.0117054	0.134863	0.0962115
chr3	43489723	43489823	1674111	0	-	0.33	(0.32,0.35]	chr3	170972	566	INTRON	INTRON	ANO10	ENSG00000160746.13	ENST00000292246.8:ENST00000350459.8:ENST00000396091.7:ENST00000414522.6:ENST00000451430.6:ENST00000448045.1	protein_coding	protein_coding	protein_coding	protein_coding	5	65	2	2.10695	2.121575	2.1362	0.0291083	0.0127483	0.128029	0.0987441
chr13	19722859	19722959	5552339	0	-	0.47	(0.44,0.476]	chr13	530696	129	INTRON	INTRON	PSPC1	ENSG00000121390.19	ENST00000471658.5:ENST00000492741.5:ENST00000635562.1:ENST00000338910.9:ENST00000619300.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	42	2	1.49942	2.12157	2.74372	0.0792118	0.0153007	0.199574	0.108569
chr6	16258720	16258820	2826177	0	+	0.35	(0.32,0.35]	chr6	265366	2	INTRON	INTRON	GMPR	ENSG00000137198.10	ENST00000259727.5:ENST00000543191.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	65	2	1.97654	2.12147	2.2664	0.0199969	0.0199113	0.120668	0.109608
chr8	140991919	140992019	4079985	0	-	0.5	(0.476,0.515]	chr8	370590	74	INTRON	INTRON	PTK2	ENSG00000169398.20	ENST00000696786.1:ENST00000522684.5:ENST00000395218.3:ENST00000521059.5:ENST00000519993.5:ENST00000340930.7:ENST00000524357.5:ENST00000521791.5:ENST00000523067.5:ENST00000520828.5:ENST00000519881.5:ENST00000520892.5:ENST00000517453.5:ENST00000520045.5:ENST00000521332.5:ENST00000524040.5:ENST00000523679.1:ENST00000524257.5:ENST00000523797.1:ENST00000519635.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	13	139	2	1.90822	2.1214399999999998	2.33466	0.00708879	4.87816e-4	0.0722268	0.0199693
chr1	224426611	224426710	645360	0	-	0.212121	[0,0.28]	chr1	76289	15	INTRON	INTRON	WDR26	ENSG00000162923.17	ENST00000414423.9:ENST00000678917.1:ENST00000651911.2:ENST00000678879.1:ENST00000486652.5:ENST00000678555.1:ENST00000443112.6:ENST00000489825.5:ENST00000477425.1:ENST00000445239.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	128	2	1.97426	2.12142	2.26858	0.0275926	0.00271709	0.123904	0.0481073
chr10	73056881	73056980	4647441	0	-	0.535354	(0.515,0.57]	chr10	427530	29	INTRON	INTRON	P4HA1	ENSG00000122884.13	ENST00000394890.7:ENST00000307116.6:ENST00000373008.6:ENST00000440381.5:ENST00000263556.3	protein_coding	protein_coding	protein_coding	protein_coding	3	30	2	2.11313	2.12142	2.12971	0.0757903	0.0256725	0.194427	0.133676
chr11	3774334	3774429	4894937	0	-	0.557895	(0.515,0.57]	chr11	458908	2	INTRON	INTRON	NUP98	ENSG00000110713.17	ENST00000359171.8:ENST00000324932.12:ENST00000650171.1:ENST00000355260.7:ENST00000397004.8:ENST00000397007.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	30	2	2.11313	2.12142	2.12971	0.0757903	0.0256725	0.194427	0.133676
chr14	30894935	30895030	5856536	0	-	0.431579	(0.408,0.44]	chr14	556404	13	UTR3	UTR3:EXON_MRNA	STRN3	ENSG00000196792.12	ENST00000355683.9:ENST00000357479.10	protein_coding	protein_coding	protein_coding	protein_coding	5	56	2	1.69172	2.121375	2.55103	0.0486032	0.00587353	0.153946	0.0690758
chr3	128883022	128883122	1498261	0	+	0.35	(0.32,0.35]	chr3	156400	11	INTRON	INTRON	ACAD9	ENSG00000177646.20	ENST00000681583.1:ENST00000681367.1:ENST00000679613.1:ENST00000505602.1:ENST00000514643.5:ENST00000680636.1:ENST00000511325.2:ENST00000681319.1:ENST00000681585.1:ENST00000681784.1:ENST00000308982.12:ENST00000512801.5:ENST00000679399.1:ENST00000681552.1:ENST00000511227.5:ENST00000505192.5:ENST00000679990.1:ENST00000514336.1:ENST00000515429.1:ENST00000681886.1:ENST00000679431.1:ENST00000680764.1:ENST00000505867.5:ENST00000680744.1:ENST00000679824.1:ENST00000681589.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	80	2	2.02133	2.121365	2.2214	0.017146	0.0103516	0.111072	0.085045
chr8	90349241	90349341	3793586	0	+	0.26	[0,0.28]	chr8	351786	1021	INTRON	INTRON	LINC00534	ENSG00000253394.7	ENST00000662145.1:ENST00000655523.1:ENST00000517400.6:ENST00000658299.1:ENST00000663329.1:ENST00000658342.1:ENST00000523283.6:ENST00000655219.1:ENST00000662692.1:ENST00000667296.1:ENST00000667565.1:ENST00000523406.2:ENST00000659030.1:ENST00000653734.1:ENST00000654785.1:ENST00000524361.5:ENST00000668745.1:ENST00000666641.2:ENST00000661519.1:ENST00000671657.1:ENST00000655123.1:ENST00000663098.1:ENST00000670903.1:ENST00000654946.1	lncRNA	lncRNA	lncRNA	lncRNA	4	68	2	2.10688	2.12129	2.1357	0.0338175	0.0307985	0.143385	0.134476
chr16	8948953	8949053	6442608	0	-	0.39	(0.378,0.408]	chr16	620589	124	INTRON	INTRON	USP7	ENSG00000187555.16	ENST00000673704.1:ENST00000344836.9:ENST00000563961.5:ENST00000563085.5:ENST00000542333.5:ENST00000566004.5:ENST00000569230.5:ENST00000566273.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	48	2	1.88729	2.12128	2.35527	0.0532327	0.0121511	0.162538	0.0963966
chr17	82473297	82473396	6692414	0	+	0.494949	(0.476,0.515]	chr17	654573	2	INTRON	INTRON	NARF	ENSG00000141562.19	ENST00000390006.8:ENST00000345415.11:ENST00000581202.5:ENST00000374611.9:ENST00000457415.7:ENST00000581795.5:ENST00000577812.5:ENST00000581743.5:ENST00000577432.5:ENST00000582907.5:ENST00000309794.16:ENST00000578082.5:ENST00000577410.2:ENST00000579083.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	97	2	1.72573	2.121275	2.51682	0.0196488	9.59562e-4	0.109608	0.0284801
chr13	97276809	97276909	5518944	0	+	0.33	(0.32,0.35]	chr13	527717	4	SS5_PROX	SS5_PROX:INTRON	MBNL2	ENSG00000139793.20	ENST00000397601.5:ENST00000343600.9:ENST00000376673.8:ENST00000679496.1:ENST00000685165.1:ENST00000345429.10:ENST00000469707.5:ENST00000692685.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	76	2	2.09005	2.1212400000000002	2.15243	0.0330483	0.0057293	0.133816	0.0681402
chr7	107101873	107101973	3377740	0	+	0.35	(0.32,0.35]	chr7	316252	96	INTRON	INTRON	PRKAR2B	ENSG00000005249.13	ENST00000265717.5:ENST00000393613.6:ENST00000488792.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	76	2	2.09005	2.1212400000000002	2.15243	0.0330483	0.0057293	0.133816	0.0681402
chr5	176355170	176355270	2775237	0	-	0.36	(0.35,0.378]	chr5	261328	2	SS5_PROX	SS5_PROX:INTRON	KIAA1191	ENSG00000122203.15	ENST00000393725.6:ENST00000298569.9:ENST00000393728.6:ENST00000614420.4:ENST00000620366.4:ENST00000510164.5:ENST00000533553.5:ENST00000506983.5:ENST00000503082.5:ENST00000504688.5:ENST00000506668.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	73	2	1.20425	2.121195	3.03814	0.0567138	0.00767003	0.185112	0.075364
chr16	81536683	81536783	6405918	0	+	0.38	(0.378,0.408]	chr16	615031	408	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6	protein_coding	protein_coding	protein_coding	protein_coding	4	44	2	1.53052	2.121175	2.71183	0.0744544	0.0170789	0.192012	0.110899
chr5	127554285	127554385	2480170	0	+	0.35	(0.32,0.35]	chr5	236820	5	UTR3	UTR3:EXON_MRNA	PRRC1	ENSG00000164244.21	ENST00000296666.13:ENST00000512635.2	protein_coding	protein_coding	protein_coding	protein_coding	17	165	2	1.27526	2.12116	2.96706	0.0255397	5.0005e-4	0.133676	0.0206993
chr18	2580713	2580811	6864484	0	+	0.397959	(0.378,0.408]	chr18	679858	13	INTRON	INTRON	NDC80	ENSG00000080986.13	ENST00000261597.9:ENST00000576274.2	protein_coding	protein_coding	protein_coding	protein_coding	4	48	2	2.00398	2.121145	2.23831	0.0393906	0.0179575	0.143072	0.114265
chr7	50736246	50736345	3532104	0	-	0.383838	(0.378,0.408]	chr7	329508	35	INTRON	INTRON	GRB10	ENSG00000106070.20	ENST00000335866.7:ENST00000401949.6:ENST00000644769.1:ENST00000644879.1:ENST00000406641.5:ENST00000402497.6:ENST00000643299.1:ENST00000407526.6:ENST00000645075.2:ENST00000439044.7:ENST00000644716.1:ENST00000465602.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	48	2	2.00398	2.121145	2.23831	0.0393906	0.0179575	0.143072	0.114265
chr1	51483713	51483813	454002	0	-	0.5	(0.476,0.515]	chr1	54447	20	INTRON	INTRON	EPS15	ENSG00000085832.17	ENST00000371733.8:ENST00000371730.6:ENST00000371727.5:ENST00000471391.1:ENST00000465467.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	46	2	1.86492	2.121115	2.37731	0.0550347	0.0111793	0.165463	0.0937192
chr22	21852926	21853026	7561239	0	-	0.4	(0.378,0.408]	chr22	773388	447	INTRON	INTRON	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	25	275	2	2.08567	2.121105	2.15654	9.38662e-4	2.99212e-4	0.0280776	0.0155054
chr1	89887333	89887432	160189	0	+	0.373737	(0.35,0.378]	chr1	17285	403	INTRON	INTRON	LRRC8D	ENSG00000171492.14	ENST00000525774.5:ENST00000337338.9:ENST00000394593.7:ENST00000532201.5:ENST00000414841.1:ENST00000527156.1:ENST00000441269.2	protein_coding	protein_coding	protein_coding	protein_coding	3	38	2	1.75561	2.1210899999999997	2.48657	0.0739399	0.032907	0.190914	0.145164
chr1	179073225	179073323	266153	0	+	0.367347	(0.35,0.378]	chr1	31059	12	UTR3	UTR3:EXON_MRNA	FAM20B	ENSG00000116199.12	ENST00000263733.5	protein_coding	protein_coding	protein_coding	protein_coding	3	38	2	1.75561	2.1210899999999997	2.48657	0.0739399	0.032907	0.190914	0.145164
chr13	19760911	19761010	5552724	0	-	0.474747	(0.44,0.476]	chr13	530722	11	INTRON	INTRON	PSPC1	ENSG00000121390.19	ENST00000471658.5:ENST00000492741.5:ENST00000338910.9:ENST00000619300.4:ENST00000427943.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	43	2	2.03266	2.1210750000000003	2.20949	0.0672585	0.0155853	0.183051	0.109411
chr2	24510488	24510588	709449	0	+	0.45	(0.44,0.476]	chr2	82200	179	INTRON	INTRON	NCOA1	ENSG00000084676.16	ENST00000348332.8:ENST00000496333.5:ENST00000406961.5:ENST00000469850.5:ENST00000405141.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	71	2	1.85696	2.1210750000000003	2.38519	0.012193	0.0107727	0.0920575	0.0910127
chr3	182897301	182897353	1578939	0	+	0.461538	(0.44,0.476]	chr3	162843	1	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	ATP11B	ENSG00000058063.16	ENST00000323116.10:ENST00000498086.5:ENST00000490303.5:ENST00000466758.5:ENST00000482070.1:ENST00000491699.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	43	2	2.03266	2.1210750000000003	2.20949	0.0672585	0.0155853	0.183051	0.109411
chr4	126452233	126452333	2235227	0	-	0.47	(0.44,0.476]	chr4	219005	169	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1:ENST00000651327.1	lncRNA	lncRNA	lncRNA	lncRNA	7	71	2	1.85696	2.1210750000000003	2.38519	0.012193	0.0107727	0.0920575	0.0910127
chr6	157869225	157869324	3016224	0	+	0.444444	(0.44,0.476]	chr6	281360	12	INTRON	INTRON	SNX9	ENSG00000130340.17	ENST00000614703.4:ENST00000614800.4:ENST00000680863.1:ENST00000679814.1:ENST00000680464.1:ENST00000681186.1:ENST00000679732.1:ENST00000681183.1:ENST00000681534.1:ENST00000681651.1:ENST00000680089.1:ENST00000680078.1:ENST00000680974.1:ENST00000680095.1:ENST00000680015.1:ENST00000681138.1:ENST00000392185.8:ENST00000679790.1:ENST00000680495.1:ENST00000679691.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	43	2	2.03266	2.1210750000000003	2.20949	0.0672585	0.0155853	0.183051	0.109411
chr22	19490950	19491049	7476946	0	+	0.494949	(0.476,0.515]	chr22	762407	66	INTRON	INTRON	CDC45	ENSG00000093009.11	ENST00000407835.6:ENST00000437685.6:ENST00000483431.5:ENST00000438587.6:ENST00000672837.1:ENST00000263201.7:ENST00000404724.7:ENST00000487669.5:ENST00000428937.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	16	168	2	1.78439	2.121005	2.45762	0.005822	2.39919e-4	0.0666248	0.0136439
chr11	86066852	86066952	5014821	0	-	0.33	(0.32,0.35]	chr11	473022	349	INTRON	INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000630913.2:ENST00000528398.5:ENST00000356360.9:ENST00000534412.5:ENST00000531558.1:ENST00000531930.5:ENST00000532041.5:ENST00000525162.5:ENST00000528256.1:ENST00000528411.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	18	215	2	2.03914	2.1209800000000003	2.20282	0.00263852	8.87502e-4	0.0458682	0.0271952
chr11	85982344	85982423	5013952	0	-	0.265823	[0,0.28]	chr11	472934	3	SS3_PROX	SS3_PROX:INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000530692.5:ENST00000630913.2:ENST00000529760.5:ENST00000528398.5:ENST00000532603.5:ENST00000356360.9:ENST00000529016.5:ENST00000526961.5:ENST00000530542.1	protein_coding	protein_coding	protein_coding	protein_coding	4	60	2	1.79953	2.120975	2.44242	0.0491024	0.0377477	0.156608	0.155269
chr7	99402206	99402305	3583254	0	-	0.444444	(0.44,0.476]	chr7	333739	14	INTRON	INTRON	PDAP1	ENSG00000106244.13	ENST00000350498.8:ENST00000426447.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	88	2	1.59522	2.120955	2.64669	0.0189007	0.0040295	0.108861	0.0578376
chr11	66619504	66619604	4810827	0	+	0.33	(0.32,0.35]	chr11	447853	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	RBM14-RBM4:RBM14	ENSG00000248643.5:ENSG00000239306.5	ENST00000412278.2:ENST00000393979.3:ENST00000511114.1:ENST00000310137.5:ENST00000409372.1:ENST00000421355.1:ENST00000443702.1:ENST00000500635.2:ENST00000409738.4:ENST00000461478.1:ENST00000496694.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	21	255	2	1.89086	2.1209249999999997	2.35099	0.00169252	7.3047e-4	0.0381936	0.0248722
chr22	19094880	19094980	7551739	0	-	0.36	(0.35,0.378]	chr22	771903	50	INTRON	INTRON	DGCR2	ENSG00000070413.20	ENST00000537045.5:ENST00000545799.5:ENST00000263196.12:ENST00000389262.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	70	2	1.60653	2.1209	2.63527	0.0427748	0.00443588	0.148082	0.061054
chr7	87153044	87153144	3345622	0	+	0.52	(0.515,0.57]	chr7	311613	1	SS5_PROX	SS5_PROX:INTRON	DMTF1	ENSG00000135164.19	ENST00000413276.6:ENST00000447863.5:ENST00000579677.5:ENST00000425406.5:ENST00000446796.6:ENST00000420131.5:ENST00000414630.6:ENST00000547146.6:ENST00000579850.5:ENST00000453049.5:ENST00000331242.12:ENST00000430405.7:ENST00000449088.7:ENST00000448598.5:ENST00000428819.5:ENST00000432937.6:ENST00000584619.5:ENST00000432366.6:ENST00000423590.6:ENST00000394703.9:ENST00000584457.5:ENST00000580710.5:ENST00000579592.5:ENST00000434534.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	24	196	2	1.69129	2.1208299999999998	2.55037	0.00212858	1.47694e-4	0.0427301	0.0111067
chr1	29103035	29103135	60873	0	+	0.49	(0.476,0.515]	chr1	7771	47	INTRON	INTRON	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000373798.5:ENST00000649674.1:ENST00000343067.9:ENST00000349460.9:ENST00000490308.2:ENST00000650132.1:ENST00000649992.1:ENST00000460378.1:ENST00000462032.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	41	2	1.68092	2.120625	2.56033	0.0474026	0.0287634	0.169265	0.127066
chr6	147783537	147783637	2991834	0	+	0.48	(0.476,0.515]	chr6	280177	461	INTRON	INTRON	ENSG00000227681	ENSG00000227681.5	ENST00000427015.1	lncRNA	lncRNA	lncRNA	lncRNA	4	41	2	1.68092	2.120625	2.56033	0.0474026	0.0287634	0.169265	0.127066
chr16	23916940	23917040	6324570	0	+	0.51	(0.476,0.515]	chr16	605701	232	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000498739.1	protein_coding	protein_coding	protein_coding	protein_coding	7	77	2	1.82798	2.12059	2.4132	0.0184548	0.00417094	0.116598	0.0570595
chr9	100094591	100094691	4308604	0	-	0.41	(0.408,0.44]	chr9	395811	341	INTRON	INTRON	ERP44	ENSG00000023318.9	ENST00000262455.7:ENST00000685319.1:ENST00000691188.1:ENST00000687025.1:ENST00000687093.1:ENST00000690739.1:ENST00000687017.1:ENST00000690317.1:ENST00000691823.1:ENST00000686275.1:ENST00000689406.1:ENST00000684842.1:ENST00000688230.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	56	2	1.64062	2.12055	2.60048	0.0557275	0.00484324	0.165463	0.0640618
chr6	57111206	57111306	2878270	0	+	0.43	(0.408,0.44]	chr6	273249	16	INTRON	INTRON	ZNF451	ENSG00000112200.17	ENST00000515290.5:ENST00000510483.5:ENST00000357489.7:ENST00000370702.5:ENST00000444273.6:ENST00000370711.9:ENST00000370706.9:ENST00000491832.6:ENST00000502749.1:ENST00000504603.1:ENST00000509071.5:ENST00000509251.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	107	2	1.65543	2.12054	2.58565	0.0193369	6.66092e-4	0.108861	0.0233804
chr4	39907994	39908094	2131493	0	-	0.32	(0.28,0.32]	chr4	210188	2	SS5_PROX	SS5_PROX:INTRON	PDS5A	ENSG00000121892.15	ENST00000303538.13:ENST00000503396.5:ENST00000513798.1:ENST00000512643.1:ENST00000503867.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	60	2	1.56118	2.120465	2.67975	0.0467152	0.0252505	0.1676	0.12011
chr1	113087622	113087722	188238	0	+	0.43	(0.408,0.44]	chr1	20854	136	INTRON	INTRON	LRIG2	ENSG00000198799.12	ENST00000361127.6	protein_coding	protein_coding	protein_coding	protein_coding	5	48	2	1.6546400000000001	2.1204400000000003	2.58624	0.0329965	0.0273686	0.145298	0.123904
chrX	111710791	111710887	7702317	0	+	0.479167	(0.476,0.515]	chrX	788233	14	INTRON	INTRON	ALG13	ENSG00000101901.12	ENST00000487141.5:ENST00000394780.8:ENST00000251943.8:ENST00000610588.4:ENST00000621367.4:ENST00000622997.3:ENST00000624161.3:ENST00000636363.1:ENST00000624881.3:ENST00000495283.5:ENST00000623144.3:ENST00000470971.5:ENST00000623148.3:ENST00000436609.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	93	2	1.59493	2.12037	2.64581	0.0213255	0.00154394	0.123504	0.0357205
chr1	203853899	203853999	297289	0	+	0.28	[0,0.28]	chr1	34230	16	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ZC3H11A:ZBED6	ENSG00000058673.17:ENSG00000257315.3	ENST00000367210.3:ENST00000638800.1:ENST00000639812.1:ENST00000332127.8:ENST00000550078.2:ENST00000495527.5:ENST00000640465.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	84	2	1.812	2.120355	2.42871	0.0729149	0.00461175	0.189235	0.0626113
chrY	11186392	11186492	7929876	0	-	0.33	(0.32,0.35]	chrY	807176	229	INTRON	INTRON	ENSG00000278212	ENSG00000278212.3	ENST00000652671.1:ENST00000651211.2:ENST00000687423.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	9	109	2	1.90543	2.120285	2.33514	0.00690847	0.00676396	0.0741642	0.0718189
chr17	46131932	46132032	6784255	0	-	0.48	(0.476,0.515]	chr17	669216	107	INTRON	INTRON	KANSL1	ENSG00000120071.15	ENST00000574590.6:ENST00000572904.6:ENST00000432791.7:ENST00000575318.6:ENST00000638275.1:ENST00000262419.10:ENST00000648792.1:ENST00000639531.1:ENST00000639150.1:ENST00000639853.1:ENST00000571698.2:ENST00000639375.1:ENST00000638269.1:ENST00000576248.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	34	2	1.91817	2.120235	2.3223	0.0519312	0.0459211	0.164984	0.159306
chr2	95105328	95105427	1177448	0	-	0.50505	(0.476,0.515]	chr2	125631	2	INTRON	INTRON	MRPS5	ENSG00000289685.1	ENST00000272418.7:ENST00000345084.10:ENST00000695437.1:ENST00000695436.1:ENST00000695435.1:ENST00000695434.1:ENST00000695433.1:ENST00000695432.1:ENST00000695439.1:ENST00000461916.6:ENST00000475895.6:ENST00000482568.1:ENST00000695440.1:ENST00000464458.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	34	2	1.91817	2.120235	2.3223	0.0519312	0.0459211	0.164984	0.159306
chr8	31044172	31044272	3728035	0	+	0.51	(0.476,0.515]	chr8	346522	98	INTRON	INTRON	WRN	ENSG00000165392.11	ENST00000650667.1:ENST00000298139.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	34	2	1.91817	2.120235	2.3223	0.0519312	0.0459211	0.164984	0.159306
chr5	890192	890266	2564608	0	-	0.405405	(0.378,0.408]	chr5	245523	3	SS3_PROX	SS3_PROX:INTRON	BRD9	ENSG00000028310.18	ENST00000467963.6:ENST00000495265.5:ENST00000490814.6:ENST00000489816.5:ENST00000483173.5:ENST00000466684.5:ENST00000489093.1:ENST00000487688.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	16	180	2	1.82782	2.1202	2.41258	0.0039093899999999996	5.39708e-4	0.0569957	0.0215026
chr3	177027442	177027539	1870707	0	-	0.329897	(0.32,0.35]	chr3	187281	11	EXON_MRNA	EXON_MRNA:INTRON	TBL1XR1	ENSG00000177565.18	ENST00000636864.1:ENST00000457928.7:ENST00000430069.5:ENST00000637659.1:ENST00000474363.1:ENST00000673974.1:ENST00000631253.2:ENST00000352800.10:ENST00000422442.6:ENST00000626758.1:ENST00000636348.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	92	2	1.85455	2.1201849999999998	2.38582	0.0138529	0.00835992	0.0953077	0.0821555
chr16	70544137	70544237	6385352	0	+	0.42	(0.408,0.44]	chr16	613918	3	SS3_PROX	SS3_PROX:INTRON	SF3B3	ENSG00000189091.13	ENST00000302516.10:ENST00000572365.1:ENST00000567635.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	35	2	1.74775	2.120165	2.49258	0.0735403	0.0314608	0.190238	0.144381
chr12	112227888	112227988	5416158	0	-	0.35	(0.32,0.35]	chr12	517445	4	SS5_PROX	SS5_PROX:INTRON	HECTD4	ENSG00000173064.14	ENST00000550722.5:ENST00000377560.9:ENST00000682272.1:ENST00000550968.5:ENST00000547519.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	104	2	1.45623	2.12007	2.78391	0.0247853	0.00347285	0.131909	0.052042
chr12	53024626	53024726	5141607	0	+	0.4	(0.378,0.408]	chr12	485014	16	INTRON	INTRON	EIF4B	ENSG00000063046.18	ENST00000549077.5:ENST00000262056.14:ENST00000420463.7:ENST00000416762.7:ENST00000550704.5:ENST00000549481.5:ENST00000552490.5:ENST00000550390.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	125	2	1.91661	2.11996	2.32331	0.00588056	0.00189565	0.0691502	0.0393001
chr2	61524572	61524670	1131086	0	-	0.367347	(0.35,0.378]	chr2	121618	10	INTRON	INTRON	XPO1	ENSG00000082898.19	ENST00000676553.1:ENST00000677556.1:ENST00000677814.1:ENST00000676771.1:ENST00000677803.1:ENST00000677239.1:ENST00000678790.1:ENST00000677928.1:ENST00000678182.1:ENST00000677150.1:ENST00000678172.1:ENST00000678360.1:ENST00000678081.1:ENST00000676889.1:ENST00000676783.1:ENST00000679035.1:ENST00000677422.1:ENST00000677417.1:ENST00000677813.1:ENST00000676999.1:ENST00000676667.1:ENST00000678263.1:ENST00000678877.1:ENST00000677933.1:ENST00000680228.1:ENST00000677289.1:ENST00000401558.7:ENST00000428210.5:ENST00000677290.1:ENST00000677850.1:ENST00000451765.6:ENST00000676789.1:ENST00000678741.1:ENST00000404992.6:ENST00000406957.5:ENST00000443240.5:ENST00000476585.5:ENST00000468259.1:ENST00000420673.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	118	2	1.85698	2.1198550000000003	2.38273	0.00534773	0.00449168	0.0642565	0.0612284
chr1	246186542	246186642	677498	0	-	0.34	(0.32,0.35]	chr1	79722	4	SS5_PROX	SS5_PROX:INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000391836.3:ENST00000453676.5:ENST00000462422.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	54	2	1.83416	2.11973	2.4053	0.0631198	0.0108284	0.176946	0.0920575
chr19	11118295	11118395	7017123	0	+	0.44	(0.408,0.44]	chr19	697485	9	INTRON	INTRON	LDLR	ENSG00000130164.14	ENST00000557933.5:ENST00000558518.6:ENST00000545707.5:ENST00000535915.5:ENST00000455727.6:ENST00000558013.5:ENST00000252444.9:ENST00000559340.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	78	2	1.21994	2.1196800000000002	3.01942	0.076179	7.74413e-4	0.195346	0.0256083
chr4	176328330	176328427	2083185	0	+	0.237113	[0,0.28]	chr4	205895	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	SPCS3	ENSG00000129128.13	ENST00000503362.2:ENST00000507678.5:ENST00000507001.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	99	2	1.73226	2.11966	2.50706	0.0524108	0.00338815	0.160429	0.0535583
chr11	65441445	65441545	4805957	0	+	0.36	(0.35,0.378]	chr11	446554	188	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	17	196	2	2.03162	2.11965	2.20768	0.0036468	4.47925e-4	0.0535094	0.0191936
chr6	149727498	149727598	3246774	0	-	0.29	(0.28,0.32]	chr6	301670	3	SS3_PROX	SS3_PROX:INTRON	NUP43	ENSG00000120253.14	ENST00000340413.7:ENST00000367404.8	protein_coding	protein_coding	protein_coding	protein_coding	5	71	2	1.68409	2.11965	2.55521	0.0548665	0.0067419	0.165463	0.0739405
chrX	44876386	44876486	7648634	0	+	0.28	[0,0.28]	chrX	782726	20	INTRON	INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000675440.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000621147.5:ENST00000475233.1:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	94	2	2.06779	2.11964	2.17149	0.0308079	0.0096412	0.13151	0.0870233
chr2	107695740	107695839	1205505	0	-	0.333333	(0.32,0.35]	chr2	128516	446	INTRON	INTRON	LINC01885	ENSG00000237880.2	ENST00000654481.1	lncRNA	lncRNA	lncRNA	lncRNA	4	54	2	2.04237	2.1195250000000003	2.19668	0.0375542	0.021398	0.140222	0.123719
chr3	177160270	177160370	1872074	0	-	0.49	(0.476,0.515]	chr3	187422	242	INTRON	INTRON	TBL1XR1	ENSG00000177565.18	ENST00000457928.7:ENST00000430069.5:ENST00000673974.1:ENST00000352800.10:ENST00000422442.6:ENST00000428970.5:ENST00000424913.5:ENST00000437738.5:ENST00000431421.5:ENST00000635794.1:ENST00000630796.2:ENST00000450267.5:ENST00000630833.2:ENST00000431674.5:ENST00000422066.5:ENST00000443315.5:ENST00000627825.2:ENST00000427349.5:ENST00000413084.5:ENST00000637137.1:ENST00000491623.2:ENST00000637544.1:ENST00000636187.1:ENST00000636912.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	87	2	2.06011	2.119515	2.17892	0.00869033	0.0046578	0.0788605	0.0629753
chr2	177256118	177256218	1275761	0	-	0.41	(0.408,0.44]	chr2	134708	215	INTRON	INTRON	NFE2L2	ENSG00000116044.16	ENST00000397063.8:ENST00000464747.5:ENST00000397062.8:ENST00000446151.6:ENST00000449627.1:ENST00000448782.5:ENST00000430047.1:ENST00000586532.5:ENST00000421929.5:ENST00000423513.5:ENST00000588123.1:ENST00000477534.1:ENST00000462023.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	88	2	1.91269	2.11944	2.32619	0.0153219	0.00239266	0.100173	0.0450826
chr9	92228686	92228764	4286651	0	-	0.474359	(0.44,0.476]	chr9	394100	1	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	IARS1	ENSG00000196305.19	ENST00000375643.7:ENST00000443024.7:ENST00000447699.7:ENST00000683537.1:ENST00000684726.1:ENST00000683192.1:ENST00000683565.1:ENST00000682756.1:ENST00000684542.1:ENST00000683793.1:ENST00000683817.1:ENST00000682141.1:ENST00000682893.1:ENST00000684557.1:ENST00000498025.2:ENST00000682156.1:ENST00000683017.1:ENST00000682521.1:ENST00000627121.3:ENST00000683469.1:ENST00000683495.1:ENST00000682578.1:ENST00000682533.1:ENST00000472894.2:ENST00000684757.1:ENST00000684445.1:ENST00000683376.1:ENST00000683679.1:ENST00000683119.1:ENST00000684594.1:ENST00000684267.1:ENST00000683477.1:ENST00000684232.1:ENST00000684101.1:ENST00000684328.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	48	2	1.70242	2.1194100000000002	2.5364	0.0309324	0.0282713	0.137721	0.13151
chr20	5118509	5118609	7311568	0	-	0.39	(0.378,0.408]	chr20	744485	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	PCNA	ENSG00000132646.11	ENST00000379160.3:ENST00000379143.10	protein_coding	protein_coding	protein_coding	protein_coding	10	108	2	1.73771	2.11935	2.50099	0.011556	0.00245021	0.0889104	0.0457892
chrX	48522930	48523019	7658425	0	+	0.58427	(0.57,1]	chrX	783762	3	INTRON	INTRON	EBP	ENSG00000147155.11	ENST00000276096.10:ENST00000498425.1:ENST00000495186.6:ENST00000446158.5:ENST00000414061.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	48	2	1.53189	2.11928	2.70667	0.0259412	7.21202e-4	0.121677	0.0245208
chr9	130792853	130792953	4214653	0	+	0.36	(0.35,0.378]	chr9	386427	780	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000393293.4	protein_coding	protein_coding	protein_coding	protein_coding	14	167	2	2.07051	2.119225	2.16794	0.00237628	0.00191705	0.0438368	0.0405072
chr17	42267617	42267717	6772137	0	-	0.41	(0.408,0.44]	chr17	666964	351	INTRON	INTRON	STAT5B	ENSG00000173757.10	ENST00000293328.8:ENST00000468312.1:ENST00000415845.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	77	2	1.69979	2.1191999999999998	2.53861	0.0310346	0.00202413	0.13151	0.0416117
chr13	28185415	28185515	5461301	0	+	0.32	(0.28,0.32]	chr13	523255	71	INTRON	INTRON	PAN3	ENSG00000152520.14	ENST00000503791.5:ENST00000380958.8:ENST00000399613.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	89	2	1.90249	2.11911	2.33573	0.0261803	0.00764237	0.133676	0.0752681
chr17	35605204	35605304	6599717	0	+	0.35	(0.32,0.35]	chr17	642246	1	SS3_PROX	SS3_PROX:INTRON	AP2B1	ENSG00000006125.18	ENST00000589774.5:ENST00000616784.4:ENST00000621914.4:ENST00000620039.4:ENST00000616681.4:ENST00000621668.4:ENST00000610402.5:ENST00000612035.4:ENST00000591610.5:ENST00000590538.5:ENST00000614600.4:ENST00000590432.5:ENST00000612116.5:ENST00000618940.4:ENST00000592167.5:ENST00000593014.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	78	2	1.20203	2.1189999999999998	3.03597	0.0583213	0.00832487	0.189131	0.0774402
chr22	19427500	19427599	7554383	0	-	0.414141	(0.408,0.44]	chr22	772317	164	INTRON	INTRON	HIRA:C22orf39	ENSG00000100084.14:ENSG00000242259.9	ENST00000263208.5:ENST00000340170.8:ENST00000509549.5:ENST00000464189.5:ENST00000452818.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	11	115	2	1.85123	2.11885	2.38647	0.00562669	0.00234575	0.0678837	0.0434875
chr11	73835148	73835248	4825647	0	+	0.5	(0.476,0.515]	chr11	450328	90	INTRON	INTRON	MRPL48	ENSG00000175581.14	ENST00000508278.6:ENST00000310614.12:ENST00000540162.5:ENST00000544140.5:ENST00000544819.5:ENST00000497094.6:ENST00000411840.6:ENST00000398483.7:ENST00000535277.5:ENST00000542303.5:ENST00000537007.5:ENST00000543058.1:ENST00000543374.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	42	2	1.91525	2.118775	2.3223	0.0519312	0.0232571	0.159306	0.127416
chr1	70175009	70175109	479586	0	-	0.39	(0.378,0.408]	chr1	57653	9	INTRON	INTRON	LRRC40	ENSG00000066557.6	ENST00000370952.4	protein_coding	protein_coding	protein_coding	protein_coding	6	66	2	1.76	2.11876	2.47752	0.023484	0.0092831	0.128531	0.0817766
chr3	152304446	152304546	1535343	0	+	0.33	(0.32,0.35]	chr3	159996	21	INTRON	INTRON	MBNL1	ENSG00000152601.18	ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000495875.6:ENST00000324210.10:ENST00000493459.5:ENST00000459747.1:ENST00000460591.5:ENST00000545754.5:ENST00000357472.7:ENST00000324196.9:ENST00000498502.5:ENST00000463374.5:ENST00000485910.5:ENST00000465907.6:ENST00000492948.5:ENST00000485509.5:ENST00000464596.5	protein_coding	protein_coding	protein_coding	protein_coding	19	230	2	2.07371	2.11874	2.16377	0.00230068	7.33999e-4	0.0428247	0.0247062
chr6	36600956	36601053	2854487	0	+	0.298969	(0.28,0.32]	chr6	269793	8	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	SRSF3	ENSG00000112081.17	ENST00000373715.11:ENST00000477442.6:ENST00000620941.1:ENST00000620389.1:ENST00000614136.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	33	452	2	2.0603	2.1186999999999996	2.1771	6.84532e-4	5.16705e-4	0.0239641	0.0203753
chr11	9282928	9283027	4909108	0	-	0.242424	[0,0.28]	chr11	460125	24	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	TMEM41B	ENSG00000166471.11	ENST00000524543.5:ENST00000528080.6:ENST00000299596.8:ENST00000611268.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	37	558	2	2.10445	2.1186499999999997	2.13285	0.00170231	3.76564e-4	0.0373407	0.0175609
chr5	38969397	38969493	2604586	0	-	0.177083	[0,0.28]	chr5	247841	10	INTRON	INTRON	RICTOR	ENSG00000164327.13	ENST00000357387.8:ENST00000511516.5:ENST00000296782.9:ENST00000509567.5:ENST00000515846.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	69	2	1.64178	2.11863	2.59548	0.0390996	0.0346067	0.161325	0.136649
chr15	28200161	28200260	6122792	0	-	0.444444	(0.44,0.476]	chr15	583167	10	INTRON	INTRON	HERC2	ENSG00000128731.18	ENST00000261609.13:ENST00000567869.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	56	2	1.49942	2.118615	2.73781	0.0792118	0.00276493	0.199574	0.04867
chr7	100344478	100344576	3364422	0	+	0.428571	(0.408,0.44]	chr7	314641	33	INTRON	INTRON	STAG3L5P:STAG3L5P-PVRIG2P-PILRB	ENSG00000242294.6:ENSG00000272752.6	ENST00000473757.5:ENST00000470714.5:ENST00000310771.8:ENST00000483329.6:ENST00000444874.5:ENST00000488972.6:ENST00000493499.1	lncRNA	retained_intron	lncRNA:transcribed_unprocessed_pseudogene	retained_intron:lncRNA:processed_transcript	8	87	2	1.66945	2.118605	2.56776	0.0218479	0.00227507	0.123836	0.0426265
chr10	32937393	32937488	4592498	0	-	0.526316	(0.515,0.57]	chr10	423505	6	INTRON	INTRON	ITGB1	ENSG00000150093.20	ENST00000609742.3:ENST00000678989.1:ENST00000677363.1:ENST00000302278.8:ENST00000396033.6:ENST00000417122.7:ENST00000676895.1:ENST00000678120.1:ENST00000676623.1:ENST00000678952.1:ENST00000677999.1:ENST00000679187.1:ENST00000678479.1:ENST00000676964.1:ENST00000488494.6:ENST00000488427.2:ENST00000678591.1:ENST00000678943.1:ENST00000437302.6:ENST00000678701.1:ENST00000678766.1:ENST00000676659.1:ENST00000677310.1:ENST00000474568.6:ENST00000676460.1:ENST00000475184.6:ENST00000484088.5:ENST00000480226.5:ENST00000534049.5:ENST00000528877.5:ENST00000414670.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	41	2	1.62814	2.118565	2.60899	0.035203	0.0232669	0.150193	0.118148
chr16	21505748	21505848	6461414	0	-	0.34	(0.32,0.35]	chr16	623380	3	PRIMIRNA	PRIMIRNA:INTRON	SMG1P3:MIR3680-1	ENSG00000180747.15:ENSG00000265462.1	ENST00000522841.6:ENST00000437413.2:ENST00000435197.2:ENST00000581433.1	miRNA	processed_transcript	miRNA:transcribed_unprocessed_pseudogene	processed_transcript:primary_miRNA	4	49	2	1.93031	2.11852	2.30673	0.0584434	0.0231421	0.167723	0.126939
chr7	119769521	119769621	3629034	0	-	0.36	(0.35,0.378]	chr7	337323	170	INTRON	INTRON	LINC02476	ENSG00000225546.6	ENST00000660268.1:ENST00000431071.5:ENST00000426413.2	lncRNA	lncRNA	lncRNA	lncRNA	13	152	2	2.05483	2.118455	2.18208	0.00444522	0.00122332	0.0591668	0.0324786
chr4	67651005	67651105	2153951	0	-	0.33	(0.32,0.35]	chr4	212133	14	INTRON	INTRON	UBA6	ENSG00000033178.13	ENST00000322244.10	protein_coding	protein_coding	protein_coding	protein_coding	8	73	2	1.29171	2.118405	2.9451	0.0508785	0.011051	0.176209	0.0873897
chr8	140855843	140855942	4078609	0	-	0.363636	(0.35,0.378]	chr8	370519	88	INTRON	INTRON	PTK2	ENSG00000169398.20	ENST00000696786.1:ENST00000522684.5:ENST00000395218.3:ENST00000519654.5:ENST00000521059.5:ENST00000517887.5:ENST00000519993.5:ENST00000340930.7:ENST00000519419.5:ENST00000524357.5:ENST00000521791.5:ENST00000523067.5:ENST00000520828.5:ENST00000520475.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	39	2	1.93432	2.118405	2.30249	0.0519726	0.0481438	0.176696	0.153019
chr7	73519829	73519929	3555076	0	-	0.4	(0.378,0.408]	chr7	330813	86	INTRON	INTRON	BAZ1B	ENSG00000009954.11	ENST00000339594.9:ENST00000404251.1	protein_coding	protein_coding	protein_coding	protein_coding	9	104	2	2.11608	2.118395	2.12071	0.00601933	0.00467795	0.0700813	0.0600108
chr1	180826736	180826835	271550	0	+	0.292929	(0.28,0.32]	chr1	31658	10	INTRON	INTRON	XPR1	ENSG00000143324.14	ENST00000367590.9:ENST00000367589.3	protein_coding	protein_coding	protein_coding	protein_coding	5	71	2	2.05458	2.11835	2.18212	0.0381508	0.010265700000000001	0.141764	0.089002
chr11	65443842	65443942	4805981	0	+	0.52	(0.515,0.57]	chr11	446554	212	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	33	262	2	1.61514	2.118345	2.62155	0.00195255	4.3399e-5	0.0411469	0.0056214
chr16	88783102	88783202	6540201	0	-	0.61	(0.57,1]	chr16	633998	333	INTRON	INTRON	PIEZO1	ENSG00000103335.22	ENST00000301015.14	protein_coding	protein_coding	protein_coding	protein_coding	9	48	2	1.62753	2.118345	2.60916	0.0184812	0.00119055	0.116694	0.0315806
chr1	235232075	235232172	662894	0	-	0.474227	(0.44,0.476]	chr1	78510	5	INTRON	INTRON	ARID4B	ENSG00000054267.22	ENST00000349213.7:ENST00000366603.6:ENST00000264183.9:ENST00000421364.5:ENST00000491632.5:ENST00000471257.5:ENST00000418304.1:ENST00000466653.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	46	2	1.9039	2.11831	2.33272	0.0501498	0.0129984	0.156383	0.0991656
chr10	37846403	37846503	4602487	0	-	0.47	(0.44,0.476]	chr10	423985	79	INTRON	INTRON	ZNF248	ENSG00000198105.16	ENST00000615949.6:ENST00000485560.5:ENST00000395867.8:ENST00000357328.8:ENST00000611278.4:ENST00000374648.7:ENST00000395873.7:ENST00000395874.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	46	2	1.9039	2.11831	2.33272	0.0501498	0.0129984	0.156383	0.0991656
chr15	58900131	58900226	6193788	0	-	0.326316	(0.32,0.35]	chr15	590080	2	SS3_PROX	SS3_PROX:INTRON	SLTM	ENSG00000137776.17	ENST00000380516.7:ENST00000492526.5:ENST00000557924.5:ENST00000558756.5:ENST00000249736.11:ENST00000559305.5:ENST00000480144.5:ENST00000628684.2:ENST00000559880.5:ENST00000558486.5:ENST00000560682.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	55	2	1.54741	2.11831	2.68921	0.0473733	0.0230336	0.169265	0.118056
chr4	67511225	67511325	2153164	0	-	0.33	(0.32,0.35]	chr4	211966	2	SS3_PROX	SS3_PROX:INTRON	CENPC	ENSG00000145241.11	ENST00000273853.11:ENST00000513216.5:ENST00000506882.5:ENST00000510189.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	55	2	1.54741	2.11831	2.68921	0.0473733	0.0230336	0.169265	0.118056
chr13	25341832	25341932	5457600	0	+	0.36	(0.35,0.378]	chr13	522982	18	UTR3	UTR3:EXON_MRNA:INTRON	NUP58	ENSG00000139496.17	ENST00000481980.2:ENST00000490231.6:ENST00000695571.1:ENST00000477876.2:ENST00000695572.1:ENST00000695573.1:ENST00000381736.8:ENST00000381718.8:ENST00000695575.1:ENST00000695576.1:ENST00000695577.1:ENST00000476553.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	53	2	1.82887	2.118285	2.4077	0.0584878	0.0122026	0.189395	0.0910127
chr15	55232883	55232982	6180328	0	-	0.474747	(0.44,0.476]	chr15	589130	20	INTRON	INTRON	RAB27A	ENSG00000069974.16	ENST00000336787.6:ENST00000396307.6:ENST00000564609.5:ENST00000569493.5:ENST00000566877.5:ENST00000567380.5:ENST00000565972.5:ENST00000563262.5:ENST00000568803.1	protein_coding	protein_coding	protein_coding	protein_coding	5	56	2	1.90381	2.118265	2.33272	0.0260626	0.0129984	0.122153	0.0991656
chr2	53916075	53916174	1120004	0	-	0.454545	(0.44,0.476]	chr2	119993	56	INTRON	INTRON	PSME4	ENSG00000068878.15	ENST00000404125.6:ENST00000389993.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	46	2	2.02558	2.118185	2.21079	0.0363567	0.0194581	0.138959	0.119831
chr3	49978079	49978179	1423339	0	+	0.47	(0.44,0.476]	chr3	149984	23	INTRON	INTRON	RBM6	ENSG00000004534.15	ENST00000442092.5:ENST00000443081.5:ENST00000419610.5:ENST00000441115.5:ENST00000422955.5:ENST00000454079.5:ENST00000266022.9:ENST00000425608.5:ENST00000434592.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	46	2	2.02558	2.118185	2.21079	0.0363567	0.0194581	0.138959	0.119831
chr19	4415032	4415132	7001887	0	+	0.51	(0.476,0.515]	chr19	694523	49	INTRON	INTRON	CHAF1A	ENSG00000167670.16	ENST00000301280.10:ENST00000587739.1	protein_coding	protein_coding	protein_coding	protein_coding	5	55	2	2.01953	2.11815	2.21677	0.0207026	0.0163662	0.110999	0.109586
chr11	110263031	110263131	5040992	0	-	0.49	(0.476,0.515]	chr11	474714	3	SS5_PROX	SS5_PROX:INTRON	RDX	ENSG00000137710.17	ENST00000645527.1:ENST00000530749.5:ENST00000528498.5:ENST00000528900.5:ENST00000530301.5:ENST00000647231.1:ENST00000646663.1:ENST00000645495.2:ENST00000544551.5:ENST00000530131.5:ENST00000534683.1:ENST00000642511.1:ENST00000532118.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	55	2	1.96833	2.1181099999999997	2.26789	0.0195007	0.0176567	0.119967	0.105233
chr11	14479268	14479368	4918114	0	-	0.3	(0.28,0.32]	chr11	460914	3	SS5_PROX	SS5_PROX:INTRON	COPB1	ENSG00000129083.13	ENST00000249923.7:ENST00000439561.7:ENST00000534234.5	protein_coding	protein_coding	protein_coding	protein_coding	7	91	2	1.90237	2.11809	2.33381	0.0174951	0.0104138	0.104863	0.0901622
chr2	151425824	151425923	893370	0	+	0.424242	(0.408,0.44]	chr2	98908	22	INTRON	INTRON	RIF1	ENSG00000080345.18	ENST00000453091.6:ENST00000428287.6:ENST00000444746.7:ENST00000243326.9:ENST00000414861.6:ENST00000430328.6	protein_coding	protein_coding	protein_coding	protein_coding	13	138	2	2.03451	2.118055	2.2016	0.00626591	7.06982e-4	0.0685243	0.0241881
chr10	3157785	3157862	4542930	0	-	0.493506	(0.476,0.515]	chr10	419432	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PITRM1	ENSG00000107959.17	ENST00000224949.9:ENST00000380989.6:ENST00000451104.6:ENST00000677384.1:ENST00000679309.1:ENST00000678403.1:ENST00000676719.1:ENST00000380994.6:ENST00000678855.1:ENST00000678436.1:ENST00000677817.1:ENST00000677305.1:ENST00000678986.1:ENST00000677001.1:ENST00000678987.1:ENST00000678601.1:ENST00000676953.1:ENST00000676519.1:ENST00000678050.1:ENST00000678370.1:ENST00000677922.1:ENST00000678441.1:ENST00000679134.1:ENST00000677598.1:ENST00000678539.1:ENST00000679210.1:ENST00000430362.2:ENST00000678663.1:ENST00000678972.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	42	2	1.58335	2.118015	2.65268	0.0640461	0.0201975	0.177882	0.121243
chr22	21486103	21486201	7559947	0	-	0.479592	(0.476,0.515]	chr22	773297	16	INTRON	INTRON	PI4KAP2	ENSG00000183506.17	ENST00000462560.6:ENST00000450651.5:ENST00000360806.9:ENST00000494740.5:ENST00000467443.5:ENST00000480319.5:ENST00000479693.1	transcribed_unitary_pseudogene	retained_intron	transcribed_unitary_pseudogene	retained_intron:processed_transcript:transcribed_unitary_pseudogene	4	42	2	1.58335	2.118015	2.65268	0.0640461	0.0201975	0.177882	0.121243
chr5	134906014	134906111	2491720	0	+	0.494845	(0.476,0.515]	chr5	238078	4	INTRON	INTRON	PCBD2	ENSG00000132570.15	ENST00000512783.5:ENST00000254908.11:ENST00000504352.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	42	2	1.58335	2.118015	2.65268	0.0640461	0.0201975	0.177882	0.121243
chr7	87154709	87154791	3345642	0	+	0.341463	(0.32,0.35]	chr7	311623	2	SS5_PROX	SS5_PROX:INTRON	DMTF1	ENSG00000135164.19	ENST00000413276.6:ENST00000447863.5:ENST00000579677.5:ENST00000425406.5:ENST00000446796.6:ENST00000420131.5:ENST00000414630.6:ENST00000547146.6:ENST00000579850.5:ENST00000453049.5:ENST00000331242.12:ENST00000430405.7:ENST00000449088.7:ENST00000448598.5:ENST00000428819.5:ENST00000432937.6:ENST00000584619.5:ENST00000432366.6:ENST00000423590.6:ENST00000394703.9:ENST00000584457.5:ENST00000580710.5:ENST00000579592.5:ENST00000434534.5:ENST00000583751.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	83	2	1.85014	2.1179799999999998	2.38582	0.0138529	0.0119731	0.0962115	0.0953077
chr17	17212403	17212499	6735803	0	-	0.375	(0.35,0.378]	chr17	660861	3	UTR3	UTR3:EXON_MRNA	FLCN	ENSG00000154803.13	ENST00000285071.9	protein_coding	protein_coding	protein_coding	protein_coding	15	175	2	1.76156	2.117965	2.47437	0.0090047	2.46554e-4	0.0803518	0.0139149
chr4	98999935	99000033	2002750	0	+	0.306122	(0.28,0.32]	chr4	199796	21	INTRON	INTRON	METAP1	ENSG00000164024.12	ENST00000510209.5:ENST00000296411.11:ENST00000507537.5:ENST00000506238.5:ENST00000625963.1:ENST00000503247.5:ENST00000510107.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	54	2	1.56134	2.117935	2.67453	0.0740624	0.021289	0.191153	0.123318
chr9	97985787	97985887	4173063	0	+	0.37	(0.35,0.378]	chr9	380269	7	INTRON	INTRON	ANP32B	ENSG00000136938.9	ENST00000339399.5:ENST00000473205.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	17	198	2	1.94659	2.1179300000000003	2.28927	0.00337651	4.90377e-4	0.0516884	0.0200154
chr19	48616922	48617020	7199066	0	-	0.520408	(0.515,0.57]	chr19	729801	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPL18	ENSG00000063177.13	ENST00000552347.5:ENST00000547897.5:ENST00000551749.5:ENST00000552588.5:ENST00000549920.6:ENST00000550645.5:ENST00000084795.9:ENST00000547892.1:ENST00000546623.5:ENST00000549370.5:ENST00000549273.5:ENST00000550973.5:ENST00000552705.5:ENST00000552851.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:non_stop_decay:nonsense_mediated_decay	16	148	2	2.11404	2.11792	2.1218	0.00198964	7.20457e-4	0.0411469	0.0246562
chr17	30753202	30753302	6590020	0	+	0.53	(0.515,0.57]	chr17	640860	95	INTRON	INTRON	SUZ12P1	ENSG00000264538.7	ENST00000578070.5:ENST00000579526.5:ENST00000690405.1:ENST00000497969.6:ENST00000578195.6:ENST00000582557.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	7	65	2	2.03368	2.117905	2.20213	0.00853365	0.00803127	0.0803474	0.0780043
chr21	46226464	46226562	7470857	0	-	0.520408	(0.515,0.57]	chr21	761544	34	INTRON	INTRON	LSS	ENSG00000160285.15	ENST00000356396.8:ENST00000397728.8:ENST00000457828.6:ENST00000522411.5:ENST00000464357.1:ENST00000450351.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	65	2	2.03368	2.117905	2.20213	0.00853365	0.00803127	0.0803474	0.0780043
chr3	42626799	42626899	1406240	0	+	0.33	(0.32,0.35]	chr3	147676	2	SS3_PROX	SS3_PROX:INTRON	NKTR	ENSG00000114857.19	ENST00000468735.6:ENST00000487466.5:ENST00000429888.5:ENST00000232978.13:ENST00000478488.1:ENST00000465584.5:ENST00000466553.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	141	2	1.697	2.117905	2.53881	0.00672549	0.00317745	0.0738715	0.0503705
chr19	17240170	17240270	7151176	0	-	0.43	(0.408,0.44]	chr19	722563	1	SS5_PROX	SS5_PROX:INTRON	NR2F6	ENSG00000160113.6	ENST00000291442.4:ENST00000596878.1	protein_coding	protein_coding	protein_coding	protein_coding	9	98	2	2.02591	2.11785	2.20979	0.00531945	0.00496289	0.0660391	0.0615009
chr6	28154610	28154709	2839457	0	+	0.383838	(0.378,0.408]	chr6	266538	7	UTR3	UTR3:EXON_MRNA	ZKSCAN8	ENSG00000198315.11	ENST00000330236.7	protein_coding	protein_coding	protein_coding	protein_coding	14	154	2	2.09141	2.11785	2.14429	0.00354755	0.00100501	0.0529407	0.0292285
chr20	50909399	50909499	7355657	0	-	0.37	(0.35,0.378]	chr20	750097	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ADNP	ENSG00000101126.18	ENST00000621696.5:ENST00000673732.1:ENST00000396029.8:ENST00000644386.1:ENST00000396032.8:ENST00000349014.8:ENST00000645081.1:ENST00000642364.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	73	2	1.87726	2.11782	2.35838	0.0297629	0.00468156	0.12908	0.0631419
chr7	100310921	100311021	3586517	0	-	0.52	(0.515,0.57]	chr7	334330	98	INTRON	INTRON	PMS2P1	ENSG00000078319.11	ENST00000685724.1:ENST00000692351.1:ENST00000685541.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	8	66	2	1.22815	2.11754	3.00693	0.0710142	7.26845e-4	0.185044	0.0245647
chr7	121051345	121051440	3394267	0	+	0.294737	(0.28,0.32]	chr7	317695	6	EXON_LNCRNA	EXON_LNCRNA:INTRON	CPED1	ENSG00000106034.18	ENST00000310396.10:ENST00000428526.5:ENST00000495036.5:ENST00000450913.6:ENST00000520801.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	15	202	2	2.10515	2.1175300000000004	2.12991	0.00418269	0.00131237	0.0571772	0.0333932
chr1	246055168	246055267	676183	0	-	0.40404	(0.378,0.408]	chr1	79717	17	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000391836.3:ENST00000464398.1:ENST00000453676.5:ENST00000462422.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	48	2	2.05897	2.1175249999999997	2.17608	0.0339294	0.0218783	0.134508	0.123836
chr13	114284691	114284787	5550857	0	+	0.40625	(0.378,0.408]	chr13	530559	11	INTRON	INTRON	UPF3A	ENSG00000169062.15	ENST00000375299.8:ENST00000351487.5:ENST00000484246.5:ENST00000480362.5:ENST00000474056.5:ENST00000493727.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	48	2	2.05897	2.1175249999999997	2.17608	0.0339294	0.0218783	0.134508	0.123836
chr15	42519326	42519426	6009846	0	+	0.4	(0.378,0.408]	chr15	572172	36	INTRON	INTRON	SNAP23	ENSG00000092531.10	ENST00000561526.5:ENST00000568451.5:ENST00000563765.5:ENST00000349777.5:ENST00000249647.8:ENST00000564153.5:ENST00000567094.5:ENST00000566327.5:ENST00000568331.5:ENST00000566035.5:ENST00000568859.5:ENST00000568514.5:ENST00000397138.5:ENST00000563873.5:ENST00000563830.2:ENST00000568841.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	48	2	2.05897	2.1175249999999997	2.17608	0.0339294	0.0218783	0.134508	0.123836
chr22	20637610	20637710	7557909	0	-	0.3	(0.28,0.32]	chr22	772926	94	INTRON	INTRON	SMPD4P1	ENSG00000223553.6	ENST00000443839.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	4	59	2	1.76293	2.117515	2.4721	0.0766478	0.00906617	0.196164	0.0854289
chr6	28581115	28581215	3074999	0	-	0.46	(0.44,0.476]	chr6	285871	13	INTRON	INTRON	ZBED9	ENSG00000232040.4	ENST00000646382.1:ENST00000452236.3:ENST00000530247.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	35	2	1.83899	2.117515	2.39604	0.0589734	0.0404291	0.167915	0.161534
chr8	27826104	27826204	3927214	0	-	0.32	(0.28,0.32]	chr8	359598	25	INTRON	INTRON	PBK	ENSG00000168078.10	ENST00000301905.9:ENST00000522944.5:ENST00000524266.1:ENST00000521226.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	59	2	1.76293	2.117515	2.4721	0.0766478	0.00906617	0.196164	0.0854289
chrX	154039591	154039691	7912509	0	-	0.47	(0.44,0.476]	chrX	805604	4	SS5_PROX	SS5_PROX:INTRON	MECP2	ENSG00000169057.24	ENST00000303391.11:ENST00000453960.7:ENST00000628176.2:ENST00000407218.5:ENST00000486506.5:ENST00000369957.5:ENST00000631210.1:ENST00000496908.5:ENST00000481807.3:ENST00000415944.3:ENST00000460227.4:ENST00000463644.5:ENST00000488293.4:ENST00000630151.2:ENST00000676382.1:ENST00000611468.2:ENST00000637533.1:ENST00000675526.1:ENST00000637791.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	35	2	1.83899	2.117515	2.39604	0.0589734	0.0404291	0.167915	0.161534
chr12	123391304	123391379	5242649	0	+	0.533333	(0.515,0.57]	chr12	498187	1	INTRON	INTRON	KMT5A	ENSG00000183955.14	ENST00000402868.8:ENST00000437519.5:ENST00000478781.6:ENST00000461103.5:ENST00000437502.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	76	2	1.8661	2.11749	2.36888	0.0274846	9.15531e-4	0.123904	0.027822
chr1	1664020	1664118	360666	0	-	0.561224	(0.515,0.57]	chr1	41974	27	UTR3	UTR3:EXON_MRNA:INTRON	SLC35E2B	ENSG00000189339.12	ENST00000614300.4:ENST00000617444.5:ENST00000611123.1:ENST00000480991.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	17	151	2	1.89742	2.117365	2.33731	0.00189287	5.08005e-4	0.0402736	0.020816
chr8	29055924	29056022	3726532	0	+	0.306122	(0.28,0.32]	chr8	346338	1	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HMBOX1:ENSG00000259366	ENSG00000147421.18:ENSG00000259366.2	ENST00000522468.1:ENST00000687917.1:ENST00000687452.1:ENST00000560865.1	protein_coding	nonsense_mediated_decay	protein_coding:lncRNA	nonsense_mediated_decay:lncRNA	14	185	2	1.99274	2.1173599999999997	2.24198	0.00378299	0.00228428	0.0541737	0.0438086
chr5	91370805	91370904	2674856	0	-	0.383838	(0.378,0.408]	chr5	253079	23	UTR3	UTR3:EXON_MRNA	ARRDC3	ENSG00000113369.9	ENST00000265138.4:ENST00000511391.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	15	169	2	1.81973	2.117315	2.4149	0.0108435	1.54286e-4	0.0873034	0.0106835
chr5	54066246	54066346	2618468	0	-	0.35	(0.32,0.35]	chr5	248837	181	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	127	2	1.93659	2.117255	2.29792	0.0108167	0.00175304	0.087129	0.0387108
chr11	47547307	47547407	4950345	0	-	0.44	(0.408,0.44]	chr11	464246	227	INTRON	INTRON	CELF1	ENSG00000149187.19	ENST00000310513.10:ENST00000687097.1:ENST00000531165.5:ENST00000530151.5:ENST00000525841.5:ENST00000526419.1	protein_coding	protein_coding	protein_coding	protein_coding	7	77	2	1.84516	2.1172199999999997	2.38928	0.0193431	0.0039105	0.108861	0.0569957
chr6	15494332	15494432	2825435	0	+	0.44	(0.408,0.44]	chr6	265224	64	INTRON	INTRON	JARID2	ENSG00000008083.14	ENST00000341776.7:ENST00000397311.4	protein_coding	protein_coding	protein_coding	protein_coding	7	77	2	1.84516	2.1172199999999997	2.38928	0.0193431	0.0039105	0.108861	0.0569957
chr21	6990122	6990221	7425921	0	-	0.343434	(0.32,0.35]	chr21	757520	31	INTRON	INTRON	ENSG00000280018	ENSG00000280018.4	ENST00000623165.3	lncRNA	lncRNA	lncRNA	lncRNA	6	77	2	1.45026	2.1170850000000003	2.78391	0.0622478	0.00347285	0.194723	0.052042
chr14	101794537	101794636	5818825	0	+	0.424242	(0.408,0.44]	chr14	551829	48	INTRON	INTRON	PPP2R5C	ENSG00000078304.20	ENST00000694906.1:ENST00000422945.6:ENST00000554442.5:ENST00000556068.5:ENST00000328724.9:ENST00000554504.1:ENST00000553890.1:ENST00000553554.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	77	2	1.96973	2.117065	2.2644	0.0108773	0.00768371	0.0923273	0.0753803
chr2	27348230	27348329	1086792	0	-	0.555556	(0.515,0.57]	chr2	116356	43	INTRON	INTRON	GTF3C2	ENSG00000115207.15	ENST00000359541.6:ENST00000264720.8:ENST00000457748.1:ENST00000423998.1	protein_coding	protein_coding	protein_coding	protein_coding	6	55	2	1.77795	2.1169	2.45585	0.0222234	0.00797827	0.116128	0.0798772
chr3	196933822	196933921	1597114	0	+	0.555556	(0.515,0.57]	chr3	165450	20	UTR3	UTR3:EXON_MRNA	SENP5	ENSG00000119231.11	ENST00000323460.10	protein_coding	protein_coding	protein_coding	protein_coding	6	55	2	1.77795	2.1169	2.45585	0.0222234	0.00797827	0.116128	0.0798772
chr22	15787839	15787935	7472921	0	+	0.28125	(0.28,0.32]	chr22	761926	8	EXON_LNCRNA	EXON_LNCRNA:INTRON	DUXAP8	ENSG00000206195.11	ENST00000413768.5:ENST00000437781.5:ENST00000383038.7:ENST00000661115.1:ENST00000603308.2:ENST00000447898.5:ENST00000661156.1	lncRNA	lncRNA	lncRNA	lncRNA	12	159	2	1.66677	2.11688	2.56699	0.015668	0.00100111	0.101453	0.0291511
chr11	61808095	61808192	4957438	0	-	0.525773	(0.515,0.57]	chr11	465975	10	INTRON	INTRON	FADS1	ENSG00000149485.19	ENST00000350997.12:ENST00000433932.5:ENST00000542506.5:ENST00000496123.6:ENST00000539999.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	68	2	2.00468	2.1168750000000003	2.22907	0.0166344	0.00383939	0.110511	0.0542786
chr3	47472830	47472929	1682828	0	-	0.545455	(0.515,0.57]	chr3	171885	1	INTRON	INTRON	SCAP	ENSG00000114650.21	ENST00000265565.10:ENST00000441517.6:ENST00000320017.10:ENST00000416208.5:ENST00000416847.5:ENST00000448217.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	68	2	2.00468	2.1168750000000003	2.22907	0.0166344	0.00383939	0.110511	0.0542786
chr2	144422797	144422897	1240816	0	-	0.27	[0,0.28]	chr2	131684	174	INTRON	INTRON	ZEB2	ENSG00000169554.23	ENST00000636471.1:ENST00000627532.3:ENST00000638128.1:ENST00000637304.1:ENST00000636179.1:ENST00000636820.1:ENST00000637045.1:ENST00000636413.1:ENST00000638007.1:ENST00000638087.1:ENST00000419938.5:ENST00000409487.7:ENST00000440875.6:ENST00000636732.2:ENST00000636026.2:ENST00000675069.1:ENST00000689298.1:ENST00000539609.7:ENST00000558170.6:ENST00000303660.8:ENST00000427902.5:ENST00000637267.2:ENST00000392861.6:ENST00000431672.4:ENST00000409211.5:ENST00000465308.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	128	2	1.85973	2.11687	2.37401	0.0181687	0.00568456	0.107604	0.0678837
chr22	50359132	50359232	7544347	0	+	0.45	(0.44,0.476]	chr22	771015	152	INTRON	INTRON	PPP6R2	ENSG00000100239.16	ENST00000359139.7:ENST00000395741.7:ENST00000612753.5:ENST00000395744.7	protein_coding	protein_coding	protein_coding	protein_coding	3	34	2	1.85146	2.116825	2.38219	0.0545846	0.045456	0.182529	0.149888
chr3	9830765	9830862	1361337	0	+	0.443299	(0.44,0.476]	chr3	143204	10	INTRON	INTRON	ARPC4-TTLL3:TTLL3	ENSG00000250151.9:ENSG00000214021.17	ENST00000397256.5:ENST00000427220.5:ENST00000426895.10:ENST00000685419.1:ENST00000430390.5:ENST00000483051.5:ENST00000310252.11:ENST00000496526.5:ENST00000443148.5:ENST00000383827.5:ENST00000473661.5:ENST00000455274.5:ENST00000430793.1:ENST00000438141.5:ENST00000471058.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	34	2	1.85146	2.116825	2.38219	0.0545846	0.045456	0.182529	0.149888
chr5	88197668	88197765	2669014	0	-	0.443299	(0.44,0.476]	chr5	252630	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	TMEM161B	ENSG00000164180.14	ENST00000514135.5:ENST00000296595.11:ENST00000511087.5:ENST00000510089.5:ENST00000506536.5:ENST00000511218.5:ENST00000512429.5:ENST00000515293.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	34	2	1.85146	2.116825	2.38219	0.0545846	0.045456	0.182529	0.149888
chr7	127712111	127712210	3403008	0	+	0.444444	(0.44,0.476]	chr7	318124	41	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8	protein_coding	protein_coding	protein_coding	protein_coding	3	34	2	1.85146	2.116825	2.38219	0.0545846	0.045456	0.182529	0.149888
chr6	36594855	36594955	2854416	0	+	0.4	(0.378,0.408]	chr6	269769	1	SS5_PROX	SS5_PROX:INTRON	SRSF3	ENSG00000112081.17	ENST00000613941.4:ENST00000373715.11:ENST00000620242.1:ENST00000339436.11:ENST00000477442.6:ENST00000620941.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	20	177	2	1.3596	2.116745	2.87389	0.0172206	4.01435e-4	0.104099	0.0179994
chr19	13760708	13760802	7023241	0	+	0.478723	(0.476,0.515]	chr19	698458	11	INTRON	INTRON	YJU2B	ENSG00000104957.14	ENST00000586600.5:ENST00000593174.5:ENST00000221554.13:ENST00000586666.5:ENST00000587019.5:ENST00000585844.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	60	2	1.91817	2.11673	2.31529	0.0459211	0.00614783	0.164984	0.0676501
chr3	9427062	9427159	1359185	0	+	0.453608	(0.44,0.476]	chr3	142683	5	INTRON	INTRON	SETD5	ENSG00000168137.20	ENST00000402198.7:ENST00000431285.5:ENST00000683012.1:ENST00000463180.5:ENST00000478475.5:ENST00000415650.5:ENST00000682536.1:ENST00000663774.1:ENST00000665872.1:ENST00000666307.1:ENST00000693430.1:ENST00000691925.1:ENST00000684606.1:ENST00000691175.1:ENST00000688835.1:ENST00000683262.1:ENST00000443339.5:ENST00000406341.5:ENST00000670063.1:ENST00000468208.2:ENST00000691299.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	72	2	1.35267	2.116645	2.88062	0.060678	0.001878	0.192323	0.039073
chr19	1439070	1439159	6995403	0	+	0.52809	(0.515,0.57]	chr19	693237	3	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPS15	ENSG00000115268.10	ENST00000233609.8:ENST00000586686.6:ENST00000592588.7:ENST00000591032.1:ENST00000592623.5:ENST00000589656.6:ENST00000586656.5:ENST00000591804.6:ENST00000593052.5:ENST00000592700.2:ENST00000586096.3:ENST00000585665.2:ENST00000617694.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	56	2	1.90463	2.116495	2.32836	0.0141753	0.0126662	0.0982897	0.0959618
chr2	61532880	61532978	1131177	0	-	0.561224	(0.515,0.57]	chr2	121638	34	INTRON	INTRON	XPO1	ENSG00000082898.19	ENST00000676553.1:ENST00000677556.1:ENST00000677814.1:ENST00000676771.1:ENST00000677803.1:ENST00000677239.1:ENST00000678790.1:ENST00000677928.1:ENST00000678182.1:ENST00000677150.1:ENST00000678172.1:ENST00000678360.1:ENST00000678081.1:ENST00000676889.1:ENST00000676783.1:ENST00000679035.1:ENST00000677422.1:ENST00000677417.1:ENST00000677813.1:ENST00000676999.1:ENST00000676667.1:ENST00000678263.1:ENST00000678877.1:ENST00000677933.1:ENST00000680228.1:ENST00000401558.7:ENST00000428210.5:ENST00000677290.1:ENST00000677850.1:ENST00000451765.6:ENST00000676789.1:ENST00000678741.1:ENST00000404992.6:ENST00000406957.5:ENST00000443240.5:ENST00000420673.6:ENST00000481214.1:ENST00000495003.1:ENST00000449444.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	45	2	1.32981	2.11646	2.90311	0.0640038	0.0094233	0.199279	0.0817766
chr6	89780011	89780111	3161629	0	-	0.42	(0.408,0.44]	chr6	294833	4	SS5_PROX	SS5_PROX:INTRON	MDN1	ENSG00000112159.12	ENST00000369393.8:ENST00000629399.2:ENST00000439638.1	protein_coding	protein_coding	protein_coding	protein_coding	16	171	2	1.99578	2.116355	2.23693	0.00289494	5.79913e-4	0.0477325	0.0218753
chr7	123728820	123728920	3632459	0	-	0.35	(0.32,0.35]	chr7	337581	192	INTRON	INTRON	WASL	ENSG00000106299.8	ENST00000223023.5	protein_coding	protein_coding	protein_coding	protein_coding	13	146	2	1.92516	2.1163499999999997	2.30754	0.0076357	0.00228563	0.075226	0.0438311
chr11	66745812	66745910	4811352	0	+	0.581633	(0.57,1]	chr11	447930	5	INTRON	INTRON	C11orf80	ENSG00000173715.18	ENST00000534325.5:ENST00000524551.5:ENST00000525908.6:ENST00000540737.7:ENST00000527634.5:ENST00000527368.5:ENST00000531400.6:ENST00000642265.1:ENST00000532565.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	40	2	2.06823	2.116265	2.1643	0.00941704	0.00680672	0.0861183	0.0711884
chr20	35733001	35733099	7336459	0	-	0.55102	(0.515,0.57]	chr20	747476	3	INTRON	INTRON	RBM39	ENSG00000131051.24	ENST00000253363.11:ENST00000639702.1:ENST00000656873.1:ENST00000463004.5:ENST00000361162.10:ENST00000461283.5:ENST00000403542.6:ENST00000338163.10:ENST00000528062.7:ENST00000429968.5:ENST00000444878.5:ENST00000665058.1:ENST00000374038.7:ENST00000412738.5:ENST00000434927.5:ENST00000425184.5:ENST00000481037.5:ENST00000455343.5:ENST00000416108.5:ENST00000426951.5:ENST00000477334.1:ENST00000442447.5:ENST00000449489.5:ENST00000433027.5:ENST00000487604.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	95	2	1.60369	2.116265	2.62884	0.027865	2.10022e-4	0.124158	0.0126685
chr17	27114809	27114909	6579973	0	+	0.44	(0.408,0.44]	chr17	639586	180	INTRON	INTRON	ENSG00000285822	ENSG00000285822.1	ENST00000649401.1	lncRNA	lncRNA	lncRNA	lncRNA	19	202	2	1.93357	2.116235	2.2989	0.0025666	2.95812e-4	0.0451204	0.0153895
chr17	31949681	31949781	6595804	0	+	0.48	(0.476,0.515]	chr17	641554	16	INTRON	INTRON	SUZ12	ENSG00000178691.11	ENST00000322652.10:ENST00000580398.1	protein_coding	protein_coding	protein_coding	protein_coding	8	83	2	2.10874	2.116105	2.12347	0.0285608	0.00222235	0.12666	0.0435144
chr17	8381687	8381783	6720398	0	-	0.541667	(0.515,0.57]	chr17	659452	3	SS5_PROX	SS5_PROX:INTRON	RPL26	ENSG00000161970.15	ENST00000648839.1:ENST00000584164.6:ENST00000584906.6:ENST00000583011.6:ENST00000582485.5:ENST00000582556.5:ENST00000585176.1:ENST00000584343.6:ENST00000578812.5:ENST00000583515.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	110	2	1.89462	2.115965	2.33731	0.0139002	5.08005e-4	0.10247	0.020816
chr16	218751	218851	6426081	0	-	0.45	(0.44,0.476]	chr16	617437	91	INTRON	INTRON	LUC7L	ENSG00000007392.17	ENST00000337351.8:ENST00000426094.5:ENST00000397783.5:ENST00000629543.2:ENST00000490762.5:ENST00000293872.13:ENST00000419516.5:ENST00000397780.5:ENST00000418978.5:ENST00000430864.5:ENST00000443357.5:ENST00000494366.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	13	135	2	1.9884	2.115925	2.24345	0.00250928	0.00219888	0.0446195	0.0435144
chr8	47952619	47952719	3945684	0	-	0.37	(0.35,0.378]	chr8	361951	82	INTRON	INTRON	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7	protein_coding	protein_coding	protein_coding	protein_coding	8	97	2	2.04967	2.115915	2.18216	0.00827328	0.00609701	0.0813266	0.0676501
chr10	125108308	125108407	4713814	0	-	0.414141	(0.408,0.44]	chr10	434907	72	INTRON	INTRON	CTBP2	ENSG00000175029.17	ENST00000337195.9:ENST00000411419.6:ENST00000494626.6:ENST00000531469.5:ENST00000460976.5:ENST00000476817.1:ENST00000530884.1:ENST00000530930.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	119	2	1.62396	2.115905	2.60785	0.011922	0.00146754	0.0899583	0.035104
chr1	8792003	8792103	373528	0	-	0.49	(0.476,0.515]	chr1	43550	2	SS5_PROX	SS5_PROX:INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000656437.1:ENST00000659924.1	protein_coding	protein_coding	protein_coding	protein_coding	9	92	2	1.69758	2.115885	2.53419	0.0144542	0.00251905	0.105087	0.0446195
chr10	92691652	92691735	4491349	0	+	0.554217	(0.515,0.57]	chr10	413669	2	EXON_MRNA	EXON_MRNA:INTRON	HHEX	ENSG00000152804.11	ENST00000282728.10:ENST00000551454.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	65	2	1.77795	2.11585	2.45375	0.0222234	0.00273605	0.116128	0.0483437
chr6	31621912	31622004	2843100	0	+	0.434783	(0.408,0.44]	chr6	267571	7	INTRON	INTRON	PRRC2A	ENSG00000204469.13	ENST00000376033.3:ENST00000376007.8:ENST00000469577.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	67	2	1.96534	2.115755	2.26617	0.0216499	0.00649402	0.11491	0.0734343
chr17	42247928	42248028	6771940	0	-	0.39	(0.378,0.408]	chr17	666964	154	INTRON	INTRON	STAT5B	ENSG00000173757.10	ENST00000293328.8:ENST00000468312.1:ENST00000415845.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	66	2	1.9714	2.115745	2.26009	0.0188651	0.0109363	0.108861	0.0924799
chr1	47337613	47337713	97612	0	+	0.49	(0.476,0.515]	chr1	13138	31	INTRON	INTRON	CMPK1	ENSG00000162368.14	ENST00000371873.10:ENST00000371871.8:ENST00000471289.2:ENST00000450808.2:ENST00000371870.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	93	2	1.55902	2.11572	2.67242	0.0242957	0.00136918	0.130919	0.0336718
chr6	15251462	15251562	2823000	0	+	0.53	(0.515,0.57]	chr6	265190	21	INTRON	INTRON	JARID2	ENSG00000008083.14	ENST00000341776.7:ENST00000397311.4	protein_coding	protein_coding	protein_coding	protein_coding	6	57	2	1.8661	2.11572	2.36534	0.0274846	0.00404547	0.123904	0.0578376
chr12	68819652	68819752	5163091	0	+	0.51	(0.476,0.515]	chr12	488901	3	SS3_PROX	SS3_PROX:INTRON	MDM2	ENSG00000135679.27	ENST00000258149.11:ENST00000393412.7:ENST00000311420.13:ENST00000393417.8:ENST00000258148.11:ENST00000539479.6:ENST00000523991.5:ENST00000543323.5:ENST00000393415.7:ENST00000393416.7:ENST00000481186.6:ENST00000545204.2:ENST00000544561.6:ENST00000665020.1:ENST00000666617.1:ENST00000671567.1:ENST00000393410.5:ENST00000496959.5:ENST00000299252.8:ENST00000360430.6:ENST00000517852.5:ENST00000546048.5:ENST00000540352.5:ENST00000542502.5:ENST00000537182.5:ENST00000536089.5:ENST00000393413.7:ENST00000350057.9:ENST00000348801.7:ENST00000478070.2:ENST00000471946.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	76	2	1.89682	2.11571	2.3346	0.0158424	0.00494807	0.101453	0.0646039
chr20	32392023	32392123	7256163	0	+	0.32	(0.28,0.32]	chr20	737076	196	INTRON	INTRON	ASXL1	ENSG00000171456.21	ENST00000651418.1:ENST00000375687.10:ENST00000613218.4:ENST00000644587.1:ENST00000620121.4:ENST00000646985.1:ENST00000643168.1:ENST00000306058.9:ENST00000645688.1:ENST00000470145.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	43	2	1.90263	2.11567	2.32871	0.0581621	0.0503272	0.17488	0.167723
chr8	29058392	29058492	3726557	0	+	0.53	(0.515,0.57]	chr8	346339	11	INTRON	INTRON	HMBOX1	ENSG00000147421.18	ENST00000522468.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	26	229	2	1.68293	2.115665	2.5484	0.00339383	2.36997e-5	0.0517761	0.00380949
chr6	13660430	13660530	3058711	0	-	0.55	(0.515,0.57]	chr6	284542	12	INTRON	INTRON	RANBP9	ENSG00000010017.13	ENST00000011619.6	protein_coding	protein_coding	protein_coding	protein_coding	5	48	2	1.49871	2.1156449999999998	2.73258	0.0770828	0.00260192	0.196285	0.0470772
chr2	84977943	84978043	820331	0	+	0.36	(0.35,0.378]	chr2	91419	53	INTRON	INTRON	KCMF1	ENSG00000176407.18	ENST00000456682.1:ENST00000409785.9:ENST00000428691.5:ENST00000453448.1	protein_coding	protein_coding	protein_coding	protein_coding	5	61	2	1.98929	2.115625	2.24196	0.0417909	0.00744693	0.147075	0.0772645
chr11	68114699	68114798	4972530	0	-	0.313131	(0.28,0.32]	chr11	469439	172	INTRON	INTRON	CHKA	ENSG00000110721.12	ENST00000265689.9:ENST00000356135.9:ENST00000531341.1	protein_coding	protein_coding	protein_coding	protein_coding	3	43	2	1.83771	2.11559	2.39347	0.0591725	0.0504457	0.189982	0.156383
chr19	45510173	45510272	7080226	0	+	0.414141	(0.408,0.44]	chr19	708213	20	INTRON	INTRON	VASP	ENSG00000125753.14	ENST00000589627.1:ENST00000245932.11:ENST00000592139.1:ENST00000590603.1:ENST00000586014.5:ENST00000586619.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	68	2	1.27107	2.11557	2.96007	0.056267	0.00753901	0.166399	0.0773151
chr7	12394876	12394976	3485351	0	-	0.28	[0,0.28]	chr7	325970	7	INTRON	INTRON	VWDE	ENSG00000146530.15	ENST00000275358.8:ENST00000452576.6:ENST00000521169.5:ENST00000326715.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	90	2	1.27362	2.115455	2.95729	0.0785647	0.0101824	0.19821	0.089002
chr7	119847538	119847638	3629816	0	-	0.5	(0.476,0.515]	chr7	337335	463	INTRON	INTRON	LINC02476	ENSG00000225546.6	ENST00000660268.1:ENST00000431071.5:ENST00000426413.2	lncRNA	lncRNA	lncRNA	lncRNA	6	68	2	1.91525	2.1152699999999998	2.31529	0.0232571	0.00614783	0.127416	0.0676501
chr1	29118187	29118285	61030	0	+	0.55102	(0.515,0.57]	chr1	7792	15	UTR3	UTR3:EXON_MRNA	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000649717.1:ENST00000373798.5:ENST00000343067.9:ENST00000460378.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	13	101	2	1.52694	2.11523	2.70352	0.0116844	9.70997e-4	0.0962115	0.0283239
chr4	82830436	82830536	2179462	0	-	0.27	[0,0.28]	chr4	214262	1	SS5_PROX	SS5_PROX:INTRON	SEC31A	ENSG00000138674.17	ENST00000395310.7:ENST00000513858.5:ENST00000348405.8:ENST00000503937.5:ENST00000448323.5:ENST00000311785.11:ENST00000509142.5:ENST00000443462.6:ENST00000500777.6:ENST00000505472.5:ENST00000355196.6:ENST00000508502.5:ENST00000264405.9:ENST00000505984.5:ENST00000511338.1:ENST00000514362.5:ENST00000515749.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	14	168	2	1.58164	2.115205	2.64877	0.0110694	0.00757778	0.0929868	0.0749063
chr7	105537249	105537347	3375736	0	+	0.489796	(0.476,0.515]	chr7	316053	1	INTRON	INTRON	RINT1	ENSG00000135249.8	ENST00000467392.5:ENST00000482041.5:ENST00000493041.5:ENST00000257700.7:ENST00000497979.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	67	2	1.7425	2.115195	2.48789	0.0417334	0.00256502	0.147007	0.0466761
chr7	155664274	155664374	3452091	0	+	0.57	(0.515,0.57]	chr7	322642	190	INTRON	INTRON	RBM33	ENSG00000184863.11	ENST00000287912.7:ENST00000401878.8:ENST00000392759.7	protein_coding	protein_coding	protein_coding	protein_coding	7	60	2	1.64415	2.115195	2.58624	0.0231656	0.00526399	0.127036	0.0633874
chr16	8108222	8108322	6441591	0	-	0.39	(0.378,0.408]	chr16	620351	1006	INTRON	INTRON	ENSG00000260289	ENSG00000260289.2	ENST00000670665.1:ENST00000654046.1:ENST00000567103.2	lncRNA	lncRNA	lncRNA	lncRNA	4	47	2	1.86598	2.1151299999999997	2.36428	0.0441088	0.0300232	0.162255	0.129138
chr5	154757390	154757482	2527018	0	+	0.652174	(0.57,1]	chr5	241607	2	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	LARP1	ENSG00000155506.19	ENST00000687700.1:ENST00000336314.9:ENST00000690816.1:ENST00000518297.6:ENST00000517616.5:ENST00000518892.1:ENST00000521577.1:ENST00000519931.5:ENST00000524248.5:ENST00000685946.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	29	2	1.43111	2.115	2.79889	0.0484405	0.0110274	0.153635	0.0927187
chr17	63591834	63591933	6660074	0	+	0.606061	(0.57,1]	chr17	649796	28	UTR3	UTR3:EXON_MRNA:INTRON	DCAF7	ENSG00000136485.16	ENST00000431926.7:ENST00000690417.1:ENST00000688972.1:ENST00000686337.1:ENST00000614556.5:ENST00000686787.1:ENST00000691063.1:ENST00000688437.1:ENST00000615512.2:ENST00000688888.1:ENST00000691458.1:ENST00000692877.1:ENST00000580091.2:ENST00000693510.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	35	2	1.83769	2.11495	2.39221	0.0297587	0.00352602	0.12908	0.0546236
chr16	89471563	89471663	6543412	0	-	0.52	(0.515,0.57]	chr16	634281	399	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	54	2	1.84511	2.114935	2.38476	0.0167182	0.0110593	0.110511	0.0873897
chrX	24059587	24059687	7630782	0	+	0.48	(0.476,0.515]	chrX	781450	1	SS3_PROX	SS3_PROX:INTRON	EIF2S3	ENSG00000130741.11	ENST00000487075.1:ENST00000253039.9:ENST00000423068.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	67	2	2.01953	2.11489	2.21025	0.0163662	0.00913757	0.109586	0.0812335
chr1	156118959	156119059	230457	0	+	0.56	(0.515,0.57]	chr1	27156	33	INTRON	INTRON	LMNA	ENSG00000160789.24	ENST00000502751.5:ENST00000368301.6:ENST00000676385.2:ENST00000675939.1:ENST00000675667.1:ENST00000675989.1:ENST00000676283.1:ENST00000674720.1:ENST00000496738.6:ENST00000674518.1:ENST00000676208.1:ENST00000674600.1:ENST00000675874.1:ENST00000676434.1:ENST00000684195.1:ENST00000683032.1:ENST00000682650.1:ENST00000361308.9:ENST00000368300.9:ENST00000675881.1:ENST00000675455.1:ENST00000677389.1:ENST00000470199.2:ENST00000469565.6:ENST00000368299.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	54	2	1.7407	2.11486	2.48902	0.0242347	0.00760558	0.130613	0.0749571
chr5	127004935	127005035	2714302	0	-	0.33	(0.32,0.35]	chr5	255278	582	INTRON	INTRON	MARCHF3	ENSG00000173926.6	ENST00000308660.6:ENST00000502289.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	142	2	1.85455	2.11479	2.37503	0.00835992	0.00184792	0.0821555	0.0388609
chr12	122083365	122083465	5239908	0	+	0.42	(0.408,0.44]	chr12	497496	37	INTRON	INTRON	MLXIP	ENSG00000175727.14	ENST00000319080.12	protein_coding	protein_coding	protein_coding	protein_coding	6	68	2	2.03431	2.114775	2.19524	0.0154896	0.00990486	0.108998	0.0838372
chr9	120782017	120782116	4335350	0	-	0.323232	(0.32,0.35]	chr9	398253	31	INTRON	INTRON	FBXW2	ENSG00000119402.18	ENST00000684405.1:ENST00000684001.1:ENST00000684047.1:ENST00000608872.6:ENST00000453291.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	74	2	1.84365	2.114735	2.38582	0.0184323	0.0138529	0.116493	0.0953077
chr20	35627179	35627279	7335381	0	-	0.43	(0.408,0.44]	chr20	747239	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CPNE1	ENSG00000214078.13	ENST00000352393.8:ENST00000397443.7:ENST00000317677.9:ENST00000415920.5:ENST00000498814.1:ENST00000473373.1:ENST00000483359.5:ENST00000397442.5:ENST00000483495.5:ENST00000401607.6:ENST00000437340.5:ENST00000498056.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	13	141	2	1.95132	2.1147099999999996	2.2781	0.0035362	0.00141839	0.0546236	0.0340865
chr1	47345906	47346006	97695	0	+	0.48	(0.476,0.515]	chr1	13138	114	INTRON	INTRON	CMPK1	ENSG00000162368.14	ENST00000371873.10:ENST00000371871.8:ENST00000471289.2:ENST00000450808.2:ENST00000371870.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	46	2	1.79693	2.114675	2.43242	0.0649782	0.0091895	0.179417	0.0855292
chr1	88725697	88725797	156183	0	+	0.31	(0.28,0.32]	chr1	17045	407	INTRON	INTRON	PKN2	ENSG00000065243.20	ENST00000316005.11:ENST00000370521.8:ENST00000370513.9	protein_coding	protein_coding	protein_coding	protein_coding	4	52	2	1.71442	2.11465	2.51488	0.0454351	0.0380957	0.164236	0.141678
chr10	125065719	125065819	4713386	0	-	0.45	(0.44,0.476]	chr10	434897	262	INTRON	INTRON	CTBP2	ENSG00000175029.17	ENST00000337195.9:ENST00000411419.6:ENST00000494626.6:ENST00000531469.5:ENST00000460976.5:ENST00000476817.1:ENST00000530884.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	34	2	1.93084	2.11463	2.29842	0.0552483	0.0443175	0.165463	0.162302
chr6	42622551	42622651	2865656	0	+	0.46	(0.44,0.476]	chr6	271081	23	INTRON	INTRON	UBR2	ENSG00000024048.11	ENST00000372899.6:ENST00000372901.2	protein_coding	protein_coding	protein_coding	protein_coding	3	34	2	1.93084	2.11463	2.29842	0.0552483	0.0443175	0.165463	0.162302
chr7	140461041	140461140	3661442	0	-	0.454545	(0.44,0.476]	chr7	339916	4	INTRON	INTRON	MKRN1	ENSG00000133606.11	ENST00000255977.7:ENST00000475010.5:ENST00000495305.5:ENST00000474576.5:ENST00000480552.5:ENST00000496169.5:ENST00000443720.6:ENST00000471104.5:ENST00000467513.5:ENST00000494939.1:ENST00000498535.1:ENST00000473444.1:ENST00000475180.5:ENST00000481705.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	34	2	1.93084	2.11463	2.29842	0.0552483	0.0443175	0.165463	0.162302
chr3	45707071	45707153	1417219	0	+	0.243902	[0,0.28]	chr3	148672	3	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	SACM1L	ENSG00000211456.13	ENST00000464524.5:ENST00000455997.5:ENST00000418611.5:ENST00000672477.1:ENST00000463237.5:ENST00000441228.5:ENST00000463347.5:ENST00000438671.3:ENST00000389061.10:ENST00000445499.2:ENST00000478586.3:ENST00000672858.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	49	2	1.8986	2.1145750000000003	2.33055	0.062338	0.0531512	0.179787	0.175343
chr7	64698844	64698943	3320214	0	+	0.262626	[0,0.28]	chr7	308693	4	INTRON	INTRON	ZNF107	ENSG00000196247.13	ENST00000395391.2:ENST00000620827.6:ENST00000423627.6:ENST00000613690.5:ENST00000344930.7:ENST00000682671.1:ENST00000683971.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	49	2	1.8986	2.1145750000000003	2.33055	0.062338	0.0531512	0.179787	0.175343
chr7	107129193	107129292	3378015	0	+	0.272727	[0,0.28]	chr7	316264	5	INTRON	INTRON	PRKAR2B	ENSG00000005249.13	ENST00000265717.5:ENST00000393613.6:ENST00000488792.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	49	2	1.8986	2.1145750000000003	2.33055	0.062338	0.0531512	0.179787	0.175343
chr10	68675532	68675631	4442044	0	+	0.424242	(0.408,0.44]	chr10	409558	21	INTRON	INTRON	TET1	ENSG00000138336.9	ENST00000373644.5	protein_coding	protein_coding	protein_coding	protein_coding	6	67	2	2.00629	2.114485	2.22268	0.0189661	0.00770925	0.108861	0.0784002
chr9	37188152	37188252	4118338	0	+	0.44	(0.408,0.44]	chr9	375389	12	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000461038.5:ENST00000488607.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	17	166	2	1.59914	2.11448	2.62982	0.00687981	3.95857e-4	0.0749507	0.0185763
chr18	73208374	73208474	6988056	0	-	0.37	(0.35,0.378]	chr18	691704	72	INTRON	INTRON	LINC02864	ENSG00000263711.6	ENST00000584544.5:ENST00000581011.5:ENST00000581862.6:ENST00000669547.1:ENST00000661525.1:ENST00000583405.5	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	7	84	2	1.56881	2.11444	2.66007	0.047622	0.00123668	0.153019	0.0326427
chr3	23829297	23829397	1387963	0	+	0.43	(0.408,0.44]	chr3	145385	174	INTRON	INTRON	UBE2E1	ENSG00000170142.12	ENST00000306627.8:ENST00000346855.7:ENST00000495141.5:ENST00000442670.5:ENST00000424381.5:ENST00000467766.5:ENST00000475680.5:ENST00000452012.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	57	2	1.69566	2.114395	2.53313	0.0453922	0.00739595	0.164236	0.074277
chr17	60216558	60216657	6804095	0	-	0.373737	(0.35,0.378]	chr17	672257	14	INTRON	INTRON	USP32	ENSG00000170832.13	ENST00000300896.9:ENST00000592339.5:ENST00000590133.5:ENST00000591768.1	protein_coding	protein_coding	protein_coding	protein_coding	4	52	2	1.90405	2.114345	2.32464	0.0482651	0.0159285	0.171852	0.101453
chr10	5892209	5892308	4385197	0	+	0.515152	(0.476,0.515]	chr10	404622	7	INTRON	INTRON	FBH1	ENSG00000134452.20	ENST00000397269.7:ENST00000362091.9:ENST00000470089.5:ENST00000462507.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	46	2	2.06491	2.11434	2.16377	0.0304733	0.0243026	0.143385	0.12011
chr16	643544	643644	6273186	0	+	0.51	(0.476,0.515]	chr16	598785	4	SS5_PROX	SS5_PROX:INTRON	MCRIP2	ENSG00000172366.20	ENST00000611328.4:ENST00000307650.9:ENST00000491999.5:ENST00000629534.2:ENST00000474840.5:ENST00000615744.4:ENST00000620462.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	116	2	1.55023	2.114315	2.6784	0.019797	5.61257e-4	0.120593	0.021915
chr8	37862297	37862396	3935565	0	-	0.393939	(0.378,0.408]	chr8	360548	38	UTR3	UTR3:EXON_MRNA	RAB11FIP1	ENSG00000156675.16	ENST00000330843.9:ENST00000287263.8	protein_coding	protein_coding	protein_coding	protein_coding	12	117	2	1.58749	2.114295	2.6411	0.0116117	0.00174684	0.0962115	0.0375932
chr4	82883831	82883931	2180036	0	-	0.22	[0,0.28]	chr4	214408	15	INTRON	INTRON	SEC31A	ENSG00000138674.17	ENST00000395310.7:ENST00000513858.5:ENST00000348405.8:ENST00000448323.5:ENST00000311785.11:ENST00000509142.5:ENST00000443462.6:ENST00000355196.6:ENST00000508502.5:ENST00000505984.5:ENST00000508479.5:ENST00000436790.6:ENST00000503058.5:ENST00000507816.5:ENST00000514326.5:ENST00000513323.5:ENST00000511975.5:ENST00000507340.5:ENST00000507867.5:ENST00000506497.5:ENST00000510310.1:ENST00000503210.5:ENST00000505434.5:ENST00000507676.5:ENST00000506495.5:ENST00000507051.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	67	2	1.85666	2.11428	2.3719	0.0660997	0.0139689	0.181924	0.10247
chr4	126697064	126697164	2237680	0	-	0.36	(0.35,0.378]	chr4	219023	2316	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	12	114	2	1.7046	2.114275	2.52395	0.00824736	0.00606853	0.0773378	0.0703415
chr9	109104021	109104120	4312444	0	-	0.444444	(0.44,0.476]	chr9	396380	101	INTRON	INTRON	TMEM245	ENSG00000106771.13	ENST00000374586.8:ENST00000491854.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	46	2	2.08277	2.11425	2.14573	0.0309998	0.0238593	0.13151	0.129075
chr9	133374938	133375038	4370437	0	-	0.47	(0.44,0.476]	chr9	402199	3	SS5_PROX	SS5_PROX:INTRON	SURF4	ENSG00000148248.14	ENST00000545297.5:ENST00000613129.4:ENST00000618229.4:ENST00000371989.8:ENST00000485435.6:ENST00000467910.5:ENST00000371991.3:ENST00000371982.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	46	2	2.08277	2.11425	2.14573	0.0309998	0.0238593	0.13151	0.129075
chr15	64079013	64079112	6202655	0	-	0.363636	(0.35,0.378]	chr15	591577	31	INTRON	INTRON	CIAO2A	ENSG00000166797.11	ENST00000300030.8:ENST00000380290.7:ENST00000559705.1:ENST00000557835.5:ENST00000559950.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	37	2	1.90405	2.11424	2.32443	0.0544216	0.0482651	0.171852	0.164972
chr16	75044162	75044262	6389870	0	+	0.36	(0.35,0.378]	chr16	614482	414	INTRON	INTRON	ZNRF1	ENSG00000186187.12	ENST00000335325.9:ENST00000320619.10:ENST00000567962.5:ENST00000566250.5:ENST00000564320.1:ENST00000568511.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	37	2	1.90405	2.11424	2.32443	0.0544216	0.0482651	0.171852	0.164972
chr2	182972027	182972126	1285350	0	-	0.363636	(0.35,0.378]	chr2	135354	43	INTRON	INTRON	NCKAP1	ENSG00000061676.15	ENST00000361354.9:ENST00000360982.2	protein_coding	protein_coding	protein_coding	protein_coding	3	37	2	1.90405	2.11424	2.32443	0.0544216	0.0482651	0.171852	0.164972
chr8	54070701	54070800	3953566	0	-	0.373737	(0.35,0.378]	chr8	362624	45	INTRON	INTRON	LYPLA1	ENSG00000120992.18	ENST00000316963.8:ENST00000618914.4:ENST00000618741.1:ENST00000343231.10:ENST00000519272.5:ENST00000518546.5:ENST00000522007.5:ENST00000519891.5:ENST00000521352.5:ENST00000521898.5:ENST00000519926.5:ENST00000517297.5:ENST00000520896.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	37	2	1.90405	2.11424	2.32443	0.0544216	0.0482651	0.171852	0.164972
chr1	77987375	77987475	148649	0	+	0.48	(0.476,0.515]	chr1	16574	57	INTRON	INTRON	DNAJB4	ENSG00000162616.9	ENST00000487931.1:ENST00000477671.2:ENST00000484662.1:ENST00000426517.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	41	2	1.74317	2.11422	2.48527	0.0396373	0.03496	0.161534	0.13747500000000001
chr3	10313493	10313589	1613241	0	-	0.479167	(0.476,0.515]	chr3	166604	9	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	SEC13	ENSG00000157020.18	ENST00000350697.8:ENST00000337354.8:ENST00000397109.7:ENST00000479868.6:ENST00000397117.5:ENST00000383801.6:ENST00000477547.6:ENST00000397105.7:ENST00000431352.1:ENST00000397102.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	41	2	1.74317	2.11422	2.48527	0.0396373	0.03496	0.161534	0.13747500000000001
chr5	65564543	65564642	2368636	0	+	0.50505	(0.476,0.515]	chr5	228218	2	INTRON	INTRON	PPWD1	ENSG00000113593.12	ENST00000508982.1:ENST00000535264.5:ENST00000538977.5:ENST00000503435.5:ENST00000515447.5:ENST00000261308.10:ENST00000510930.5:ENST00000511908.5:ENST00000502703.5:ENST00000505380.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	41	2	1.74317	2.11422	2.48527	0.0396373	0.03496	0.161534	0.13747500000000001
chr1	207686455	207686555	304365	0	+	0.24	[0,0.28]	chr1	35014	21	INTRON	INTRON	CR1L	ENSG00000197721.17	ENST00000508064.7:ENST00000530905.1:ENST00000294997.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	67	2	1.98291	2.114185	2.24546	0.0494143	0.0206502	0.156195	0.122348
chr1	89534861	89534961	157500	0	+	0.36	(0.35,0.378]	chr1	17165	75	INTRON	INTRON	LRRC8B	ENSG00000197147.15	ENST00000330947.7:ENST00000439853.6:ENST00000449440.5:ENST00000640258.1:ENST00000639264.1	protein_coding	protein_coding	protein_coding	protein_coding	3	37	2	1.82887	2.11413	2.39939	0.0584878	0.0458078	0.189395	0.149888
chr4	75482147	75482244	2161422	0	-	0.350515	(0.35,0.378]	chr4	212898	33	UTR3	UTR3:EXON_MRNA	RCHY1	ENSG00000163743.14	ENST00000324439.10:ENST00000380840.6:ENST00000514589.5:ENST00000505105.5:ENST00000512567.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	37	2	1.82887	2.11413	2.39939	0.0584878	0.0458078	0.189395	0.149888
chr19	2272441	2272539	6997104	0	+	0.55102	(0.515,0.57]	chr19	693662	6	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	OAZ1	ENSG00000104904.12	ENST00000590943.6:ENST00000602676.6:ENST00000581150.6:ENST00000582888.8:ENST00000593012.1:ENST00000588673.3:ENST00000586054.2:ENST00000589361.2:ENST00000592727.3:ENST00000589739.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	23	210	2	1.83977	2.1140849999999998	2.3884	0.00376163	3.65558e-5	0.0539118	0.00484751
chr2	38305498	38305598	1098611	0	-	0.4	(0.378,0.408]	chr2	117813	48	INTRON	INTRON	ATL2	ENSG00000119787.14	ENST00000378954.9:ENST00000406122.5:ENST00000405384.6:ENST00000402054.5:ENST00000419554.6:ENST00000651368.1:ENST00000452935.6:ENST00000629272.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	13	145	2	1.65121	2.11408	2.57695	0.0160595	1.97416e-4	0.101453	0.0122531
chr17	39393270	39393370	6766569	0	-	0.26	[0,0.28]	chr17	665497	497	INTRON	INTRON	FBXL20	ENSG00000108306.13	ENST00000264658.11:ENST00000583610.5:ENST00000394294.7:ENST00000577399.5:ENST00000647139.1	protein_coding	protein_coding	protein_coding	protein_coding	4	60	2	1.84046	2.114015	2.38757	0.0552962	0.0335889	0.165463	0.146709
chr14	103680045	103680143	5828168	0	+	0.632653	(0.57,1]	chr14	553120	1	INTRON	INTRON	KLC1	ENSG00000126214.22	ENST00000348520.10:ENST00000380038.7:ENST00000334553.11:ENST00000389744.8:ENST00000555836.5:ENST00000347839.10:ENST00000553286.5:ENST00000557575.5:ENST00000452929.6:ENST00000554280.5:ENST00000557450.5:ENST00000554228.5:ENST00000634686.1:ENST00000246489.11:ENST00000445352.8:ENST00000537046.6:ENST00000553325.5:ENST00000555856.1:ENST00000535194.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	65	2	2.07738	2.11399	2.1506	0.00256601	0.00148198	0.0451123	0.0353943
chr1	96734865	96734965	168072	0	+	0.36	(0.35,0.378]	chr1	18215	109	INTRON	INTRON	PTBP2	ENSG00000117569.19	ENST00000482253.5:ENST00000675735.1:ENST00000609116.5:ENST00000674951.1:ENST00000675080.1:ENST00000426398.3:ENST00000460706.5:ENST00000370197.5:ENST00000370198.5:ENST00000476419.5:ENST00000676292.1:ENST00000676096.1:ENST00000675365.1:ENST00000674579.1:ENST00000675401.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	78	2	1.94672	2.113985	2.28125	0.0182271	0.00781737	0.107842	0.0788482
chr1	154257965	154258047	227920	0	+	0.402439	(0.378,0.408]	chr1	26332	1	INTRON	INTRON	UBAP2L	ENSG00000143569.19	ENST00000343815.10:ENST00000271877.11:ENST00000613315.4:ENST00000428931.6:ENST00000361546.6:ENST00000495676.5:ENST00000433615.5:ENST00000428595.1:ENST00000465855.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	18	197	2	1.73171	2.113865	2.49602	0.0068236	1.3163e-4	0.071283	0.00990153
chr9	97984692	97984792	4173052	0	+	0.82	(0.57,1]	chr9	380267	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ANP32B	ENSG00000136938.9	ENST00000339399.5:ENST00000473205.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	26	2	1.55956	2.113785	2.66801	0.0448639	0.0169968	0.149888	0.110899
chr7	72881080	72881180	3329806	0	+	0.5	(0.476,0.515]	chr7	309555	8	INTRON	INTRON	POM121	ENSG00000196313.13	ENST00000627934.3:ENST00000395270.5	protein_coding	protein_coding	protein_coding	protein_coding	19	197	2	2.09626	2.113775	2.13129	0.00169362	4.92809e-4	0.0371596	0.0200992
chr17	81588287	81588365	6849102	0	-	0.448718	(0.44,0.476]	chr17	678161	1	SS3_PROX	SS3_PROX:INTRON	NPLOC4	ENSG00000182446.14	ENST00000331134.11:ENST00000374747.9:ENST00000574897.5:ENST00000572351.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	76	2	2.07016	2.11371	2.15726	0.0151815	0.00508124	0.0994339	0.0646039
chr11	68583923	68584021	4818589	0	+	0.397959	(0.378,0.408]	chr11	449019	4	INTRON	INTRON	PPP6R3	ENSG00000110075.15	ENST00000534534.5:ENST00000524845.5:ENST00000393800.7:ENST00000265637.8:ENST00000524904.5:ENST00000393801.7:ENST00000265636.9:ENST00000529710.5:ENST00000527403.6:ENST00000534190.5:ENST00000525421.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	101	2	1.70653	2.113635	2.52074	0.0219966	9.57797e-4	0.115395	0.0284518
chr5	175509471	175509539	2550832	0	+	0.352941	(0.35,0.378]	chr5	243513	2	SS5_PROX	SS5_PROX:INTRON	SFXN1	ENSG00000164466.13	ENST00000507017.5:ENST00000321442.10:ENST00000502393.5:ENST00000507823.5:ENST00000513725.1:ENST00000506963.1:ENST00000502865.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	69	2	1.81955	2.113625	2.4077	0.0194679	0.0122026	0.11986	0.0910127
chr7	130190433	130190532	3638602	0	-	0.515152	(0.476,0.515]	chr7	338389	47	INTRON	INTRON	TMEM209	ENSG00000146842.17	ENST00000397622.7:ENST00000473456.5:ENST00000462753.5	protein_coding	protein_coding	protein_coding	protein_coding	8	84	2	1.94611	2.1136150000000002	2.28112	0.0075261	0.00700958	0.0773151	0.0718189
chr2	55020399	55020499	1121106	0	-	0.3	(0.28,0.32]	chr2	120149	60	INTRON	INTRON	RTN4	ENSG00000115310.19	ENST00000404909.5:ENST00000394611.6:ENST00000317610.11:ENST00000357732.8:ENST00000337526.11:ENST00000357376.7:ENST00000405240.5:ENST00000438462.1	protein_coding	protein_coding	protein_coding	protein_coding	13	182	2	1.80364	2.113575	2.42351	0.0188115	3.20052e-4	0.108861	0.0159645
chr1	212865807	212865906	309915	0	+	0.494949	(0.476,0.515]	chr1	35794	9	INTRON	INTRON	FLVCR1	ENSG00000162769.13	ENST00000366971.9:ENST00000419102.1:ENST00000579295.1:ENST00000474693.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	97	2	1.9127	2.11347	2.31424	0.00864134	0.00308038	0.0840615	0.0496438
chr12	112381451	112381551	5417745	0	-	0.42	(0.408,0.44]	chr12	517671	1	SS5_PROX	SS5_PROX:INTRON	HECTD4	ENSG00000173064.14	ENST00000550722.5:ENST00000377560.9:ENST00000682272.1:ENST00000550724.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	78	2	1.3378	2.113465	2.88913	0.050805	0.00185044	0.175989	0.0388609
chr1	17418926	17419025	384773	0	-	0.484848	(0.476,0.515]	chr1	45465	19	INTRON	INTRON	RCC2	ENSG00000179051.14	ENST00000375436.9:ENST00000375433.3	protein_coding	protein_coding	protein_coding	protein_coding	3	34	2	1.99341	2.1133800000000003	2.23335	0.0634557	0.037389	0.177047	0.155878
chr17	66715133	66715233	6666434	0	+	0.5	(0.476,0.515]	chr17	650379	114	INTRON	INTRON	PRKCA	ENSG00000154229.12	ENST00000413366.8:ENST00000284384.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	34	2	1.99341	2.1133800000000003	2.23335	0.0634557	0.037389	0.177047	0.155878
chr5	154786880	154786978	2527314	0	+	0.479592	(0.476,0.515]	chr5	241615	3	INTRON	INTRON	LARP1	ENSG00000155506.19	ENST00000687700.1:ENST00000336314.9:ENST00000690816.1:ENST00000518297.6:ENST00000517616.5:ENST00000521577.1:ENST00000519931.5:ENST00000524248.5:ENST00000685946.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	34	2	1.99341	2.1133800000000003	2.23335	0.0634557	0.037389	0.177047	0.155878
chr7	105330963	105331063	3603326	0	-	0.45	(0.44,0.476]	chr7	336161	240	INTRON	INTRON	SRPK2	ENSG00000135250.17	ENST00000393651.8:ENST00000482897.5:ENST00000460391.5:ENST00000462282.5:ENST00000465112.5:ENST00000482862.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	77	2	1.71119	2.113365	2.51554	0.0136438	0.00777207	0.101813	0.0757731
chr3	198190466	198190566	1600067	0	+	0.39	(0.378,0.408]	chr3	165891	1	SS5_PROX	SS5_PROX:INTRON	FAM157A	ENSG00000236438.7	ENST00000634862.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	10	110	2	2.07507	2.113335	2.1516	0.0065185	0.00284959	0.0699952	0.0494641
chr18	2711697	2711796	6865446	0	+	0.646465	(0.57,1]	chr18	680035	34	INTRON	INTRON	SMCHD1	ENSG00000101596.17	ENST00000320876.11:ENST00000688342.1:ENST00000693213.1:ENST00000577880.5:ENST00000584897.5:ENST00000581711.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	29	2	1.98953	2.11332	2.23711	0.0182848	0.0172108	0.115629	0.104099
chr19	47351286	47351383	7085405	0	+	0.608247	(0.57,1]	chr19	708955	12	INTRON	INTRON	DHX34	ENSG00000134815.19	ENST00000328771.9	protein_coding	protein_coding	protein_coding	protein_coding	5	29	2	1.98953	2.11332	2.23711	0.0182848	0.0172108	0.115629	0.104099
chr20	32393920	32394020	7256182	0	+	0.45	(0.44,0.476]	chr20	737076	215	INTRON	INTRON	ASXL1	ENSG00000171456.21	ENST00000651418.1:ENST00000375687.10:ENST00000613218.4:ENST00000644587.1:ENST00000620121.4:ENST00000646985.1:ENST00000643168.1:ENST00000306058.9:ENST00000645688.1:ENST00000470145.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	57	2	1.83899	2.1133100000000002	2.38763	0.0589734	0.00394089	0.167915	0.0573041
chr17	42842470	42842569	6612976	0	+	0.494949	(0.476,0.515]	chr17	644646	10	UTR3	UTR3:EXON_MRNA	PSME3	ENSG00000131467.12	ENST00000545225.5:ENST00000541124.5:ENST00000590720.6:ENST00000441946.6:ENST00000293362.7	protein_coding	protein_coding	protein_coding	protein_coding	6	63	2	1.50151	2.11329	2.72507	0.054954	0.0029369	0.165463	0.0496505
chr4	55539203	55539303	2149832	0	-	0.38	(0.378,0.408]	chr4	211545	288	INTRON	INTRON	CLOCK	ENSG00000134852.15	ENST00000513440.6:ENST00000381322.5:ENST00000435527.6:ENST00000506923.5:ENST00000509151.5:ENST00000513033.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	66	2	1.48005	2.113255	2.74646	0.0596711	0.00271684	0.168954	0.0481064
chr1	26713622	26713722	51347	0	+	0.48	(0.476,0.515]	chr1	6542	157	INTRON	INTRON	ARID1A	ENSG00000117713.21	ENST00000430799.7:ENST00000324856.13:ENST00000637465.1:ENST00000457599.6	protein_coding	protein_coding	protein_coding	protein_coding	10	105	2	2.04777	2.11319	2.17861	0.00544196	0.00319642	0.0646078	0.05208
chr1	229341115	229341212	652597	0	-	0.546392	(0.515,0.57]	chr1	77253	6	INTRON	INTRON	CCSAP	ENSG00000154429.11	ENST00000366687.5:ENST00000284617.7:ENST00000483092.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	14	122	2	1.46139	2.113165	2.76494	0.0196358	9.09959e-5	0.109593	0.00797978
chr11	34081735	34081833	4767958	0	+	0.540816	(0.515,0.57]	chr11	440984	16	INTRON	INTRON	CAPRIN1	ENSG00000135387.21	ENST00000341394.9:ENST00000528856.5:ENST00000389645.7:ENST00000532820.5:ENST00000530820.5:ENST00000529307.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	72	2	1.94094	2.11314	2.28534	0.00719628	0.0061678	0.0756137	0.067653
chr2	127759934	127760034	1225362	0	-	0.42	(0.408,0.44]	chr2	130486	215	INTRON	INTRON	WDR33	ENSG00000136709.12	ENST00000322313.9:ENST00000436787.5:ENST00000393006.5	protein_coding	protein_coding	protein_coding	protein_coding	4	47	2	2.00768	2.113125	2.21857	0.035843	0.0209591	0.152216	0.112046
chr16	85555666	85555766	6415387	0	+	0.55	(0.515,0.57]	chr16	615465	1964	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	8	72	2	1.86218	2.1130899999999997	2.364	0.0100169	0.00447856	0.0880217	0.0593175
chr1	179862896	179862995	593318	0	-	0.50505	(0.476,0.515]	chr1	71105	40	UTR3	UTR3:EXON_MRNA:INTRON	TOR1AIP2	ENSG00000169905.13	ENST00000367612.7:ENST00000609928.6:ENST00000482587.5	protein_coding	protein_coding	protein_coding	protein_coding	31	323	2	2.00135	2.1130750000000003	2.2248	6.24478e-4	1.88862e-4	0.0229568	0.0119565
chr7	17939483	17939583	3496557	0	-	0.4	(0.378,0.408]	chr7	326520	318	INTRON	INTRON	SNX13	ENSG00000071189.21	ENST00000428135.7:ENST00000611725.4:ENST00000409076.6:ENST00000444712.5:ENST00000482558.5:ENST00000409604.1:ENST00000475800.5:ENST00000474067.5:ENST00000471744.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	43	2	1.8374	2.1130649999999997	2.38873	0.0458857	0.0299228	0.149888	0.142135
chr19	5710981	5711077	7124618	0	-	0.46875	(0.44,0.476]	chr19	717144	22	INTRON	INTRON	LONP1	ENSG00000196365.12	ENST00000360614.8:ENST00000587552.5:ENST00000540670.6:ENST00000593119.5:ENST00000585374.5:ENST00000590558.5:ENST00000590729.5:ENST00000587365.1:ENST00000586617.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	25	252	2	1.97795	2.113	2.24805	6.24597e-4	5.46539e-4	0.0229587	0.0212767
chr22	21420757	21420857	7481206	0	+	0.46	(0.44,0.476]	chr22	763207	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	HIC2	ENSG00000169635.10	ENST00000407464.7:ENST00000407598.2	protein_coding	protein_coding	protein_coding	protein_coding	17	165	2	1.43564	2.112925	2.79021	0.0171791	9.80615e-5	0.104099	0.00832973
chr10	21597838	21597938	4405055	0	+	0.35	(0.32,0.35]	chr10	406466	20	INTRON	INTRON	MLLT10	ENSG00000078403.17	ENST00000651097.1:ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000650772.1:ENST00000651298.1:ENST00000495130.5:ENST00000377059.7:ENST00000652258.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	55	2	1.59364	2.11287	2.6321	0.0413426	0.0268	0.161557	0.123349
chr4	102817459	102817559	2213259	0	-	0.34	(0.32,0.35]	chr4	216759	46	INTRON	INTRON	UBE2D3	ENSG00000109332.20	ENST00000453744.7:ENST00000394804.6:ENST00000394803.9:ENST00000394801.8:ENST00000343106.9:ENST00000503742.5:ENST00000321805.11:ENST00000350435.11:ENST00000338145.7:ENST00000349311.12:ENST00000504211.5:ENST00000357194.10:ENST00000505207.5:ENST00000507845.5:ENST00000502404.5:ENST00000508635.5:ENST00000505307.5:ENST00000510129.5:ENST00000508476.5:ENST00000502563.5:ENST00000508238.5:ENST00000514755.5:ENST00000508974.5:ENST00000502690.5:ENST00000508818.5:ENST00000503418.5:ENST00000508249.1:ENST00000513098.5:ENST00000503282.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	55	2	1.59364	2.11287	2.6321	0.0413426	0.0268	0.161557	0.123349
chr17	22098002	22098102	6578643	0	+	0.27	[0,0.28]	chr17	639556	67	INTRON	INTRON	UBBP4	ENSG00000263563.7	ENST00000648259.1:ENST00000688301.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	8	126	2	1.38026	2.11283	2.8454	0.0710571	7.95824e-4	0.185152	0.0258804
chr1	51822516	51822609	454723	0	-	0.290323	(0.28,0.32]	chr1	54578	6	INTRON	INTRON	NRDC	ENSG00000078618.23	ENST00000354831.11:ENST00000539524.5:ENST00000352171.12:ENST00000485608.5:ENST00000473805.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	43	2	1.96475	2.112825	2.2609	0.0671429	0.0428385	0.183051	0.162255
chr2	31952077	31952177	1090531	0	-	0.3	(0.28,0.32]	chr2	116908	83	INTRON	INTRON	MEMO1:DPY30	ENSG00000162959.14:ENSG00000162961.14	ENST00000295065.9:ENST00000446765.5:ENST00000404530.6:ENST00000379383.7:ENST00000490459.5:ENST00000426310.6:ENST00000413686.1:ENST00000407893.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	43	2	1.96475	2.112825	2.2609	0.0671429	0.0428385	0.183051	0.162255
chr20	63871993	63872091	7300754	0	+	0.306122	(0.28,0.32]	chr20	743096	22	INTRON	INTRON	TPD52L2	ENSG00000101150.18	ENST00000611972.4:ENST00000615907.4:ENST00000369927.8:ENST00000346249.9:ENST00000348257.9:ENST00000352482.8:ENST00000351424.8:ENST00000217121.9:ENST00000358548.4	protein_coding	protein_coding	protein_coding	protein_coding	3	43	2	1.96475	2.112825	2.2609	0.0671429	0.0428385	0.183051	0.162255
chr7	107138951	107139051	3378113	0	+	0.32	(0.28,0.32]	chr7	316264	103	INTRON	INTRON	PRKAR2B	ENSG00000005249.13	ENST00000265717.5:ENST00000393613.6:ENST00000488792.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	43	2	1.96475	2.112825	2.2609	0.0671429	0.0428385	0.183051	0.162255
chr12	123386177	123386275	5242591	0	+	0.326531	(0.32,0.35]	chr12	498168	16	INTRON	INTRON	KMT5A	ENSG00000183955.14	ENST00000402868.8:ENST00000437519.5:ENST00000537270.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	75	2	2.0893	2.11275	2.1362	0.0291083	0.00738971	0.128029	0.0769106
chr15	92916496	92916596	6103856	0	+	0.34	(0.32,0.35]	chr15	581405	11	INTRON	INTRON	ENSG00000279765:CHD2	ENSG00000279765.3:ENSG00000173575.22	ENST00000629685.2:ENST00000630790.1:ENST00000626874.2:ENST00000394196.9:ENST00000635856.1:ENST00000420239.7:ENST00000628375.2:ENST00000625990.3:ENST00000626782.2:ENST00000629136.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	75	2	2.0893	2.11275	2.1362	0.0291083	0.00738971	0.128029	0.0769106
chr6	89831938	89832038	2916464	0	+	0.5	(0.476,0.515]	chr6	275600	2	INTRON	INTRON	CASP8AP2	ENSG00000118412.13	ENST00000552401.5:ENST00000419040.6:ENST00000547893.5:ENST00000237177.10:ENST00000551025.4:ENST00000548224.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	66	2	1.97402	2.1127000000000002	2.25138	0.0206778	0.00692374	0.110999	0.0753208
chr10	73776314	73776410	4454092	0	+	0.46875	(0.44,0.476]	chr10	411177	2	INTRON	INTRON	FUT11	ENSG00000196968.11	ENST00000489264.2	protein_coding	processed_transcript	protein_coding	processed_transcript	39	408	2	2.03326	2.1126899999999997	2.19212	4.36375e-4	1.11383e-4	0.0191798	0.00898129
chr16	85444113	85444213	6414271	0	+	0.47	(0.44,0.476]	chr16	615465	848	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	5	57	2	1.62896	2.11264	2.59632	0.0546679	0.00579248	0.182674	0.0662959
chr16	21496291	21496390	6461316	0	-	0.454545	(0.44,0.476]	chr16	623371	83	INTRON	INTRON	SMG1P3	ENSG00000180747.15	ENST00000522480.5:ENST00000522841.6:ENST00000437413.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	7	76	2	1.72421	2.1126300000000002	2.50105	0.0285163	0.00240161	0.12666	0.0452061
chr9	128330797	128330894	4204125	0	+	0.329897	(0.32,0.35]	chr9	384235	5	EXON_LNCRNA	EXON_LNCRNA:INTRON	COQ4	ENSG00000167113.11	ENST00000300452.8:ENST00000461102.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	151	2	1.96679	2.1126300000000002	2.25847	0.00700351	0.00133783	0.0718189	0.033609
chr15	27160676	27160776	5984050	0	+	0.39	(0.378,0.408]	chr15	569164	1335	INTRON	INTRON	GABRG3	ENSG00000182256.13	ENST00000615808.5:ENST00000555083.5	protein_coding	protein_coding	protein_coding	protein_coding	6	66	2	1.52219	2.112585	2.70298	0.0531838	0.00325723	0.162538	0.0524329
chr9	137638124	137638222	4223664	0	+	0.561224	(0.515,0.57]	chr9	388158	1	INTRON	INTRON	EHMT1	ENSG00000181090.21	ENST00000462484.5:ENST00000371394.6:ENST00000630754.2:ENST00000460843.6:ENST00000626216.2:ENST00000637593.1:ENST00000629335.2:ENST00000637335.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	36	2	1.56681	2.112575	2.65834	0.064862	0.0187418	0.179394	0.117523
chr7	155777038	155777137	3453246	0	+	0.282828	(0.28,0.32]	chr7	322755	20	UTR3	UTR3:EXON_MRNA	RBM33	ENSG00000184863.11	ENST00000401878.8:ENST00000341148.7	protein_coding	protein_coding	protein_coding	protein_coding	13	178	2	1.79034	2.11256	2.43478	0.012008	6.32659e-4	0.0902033	0.0227301
chr18	77979837	77979937	6990153	0	-	0.45	(0.44,0.476]	chr18	691893	2	SS3_PROX	SS3_PROX:INTRON	LINC01029	ENSG00000265843.3	ENST00000657337.1:ENST00000669341.1:ENST00000671271.1:ENST00000668585.1:ENST00000666771.1:ENST00000667842.1:ENST00000661306.1:ENST00000662598.1:ENST00000662109.1:ENST00000662085.1:ENST00000583106.1:ENST00000582805.1:ENST00000656930.1	lncRNA	lncRNA	lncRNA	lncRNA	17	190	2	1.69478	2.11254	2.5303	0.00712376	1.75579e-4	0.0756118	0.01216
chr3	47752076	47752176	1684778	0	-	0.41	(0.408,0.44]	chr3	172116	57	INTRON	INTRON	SMARCC1	ENSG00000173473.11	ENST00000254480.10:ENST00000425518.5:ENST00000454240.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	56	2	2.00228	2.1124799999999997	2.22268	0.0389732	0.00770925	0.143072	0.0784002
chr7	99563762	99563862	3362745	0	+	0.46	(0.44,0.476]	chr7	314143	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ZNF655	ENSG00000197343.11	ENST00000320583.9:ENST00000626122.2:ENST00000467680.5:ENST00000357864.6:ENST00000452314.5:ENST00000416144.5:ENST00000454654.5:ENST00000412636.5:ENST00000252713.9:ENST00000449244.5:ENST00000423973.5:ENST00000493947.5:ENST00000425063.5:ENST00000493277.5:ENST00000422422.5:ENST00000422164.5:ENST00000427931.5:ENST00000422647.5:ENST00000424881.5:ENST00000440391.5:ENST00000394163.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	88	2	1.2812	2.112465	2.94373	0.0432173	0.00143431	0.162255	0.0340925
chr1	11799420	11799517	378876	0	-	0.57732000000000006	(0.57,1]	chr1	44470	27	INTRON	INTRON	MTHFR	ENSG00000177000.13	ENST00000376590.9:ENST00000376592.6:ENST00000376583.7:ENST00000376585.6:ENST00000641747.1:ENST00000641805.1:ENST00000641446.1:ENST00000423400.7:ENST00000641407.1:ENST00000641759.1:ENST00000641721.1:ENST00000376486.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	46	2	1.87901	2.11246	2.34591	0.0152867	0.00182871	0.108569	0.0386771
chr6	26285110	26285187	3071139	0	-	0.454545	(0.44,0.476]	chr6	285474	2	UTR3	UTR3:EXON_MRNA	H4C8	ENSG00000158406.6	ENST00000634956.1:ENST00000634560.1:ENST00000377727.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	16	168	2	2.01816	2.112445	2.20673	0.00144784	0.00136136	0.0349151	0.0336321
chr4	48832219	48832319	1958223	0	+	0.38	(0.378,0.408]	chr4	196205	2	SS3_PROX	SS3_PROX:INTRON	OCIAD1	ENSG00000109180.15	ENST00000504654.5:ENST00000509122.5:ENST00000505922.6:ENST00000509664.5:ENST00000514981.5:ENST00000512981.5:ENST00000507210.5:ENST00000508996.5:ENST00000511662.5:ENST00000396448.6:ENST00000512236.5:ENST00000509164.5:ENST00000381473.7:ENST00000511102.5:ENST00000264312.12:ENST00000444354.6:ENST00000509963.5:ENST00000509246.5:ENST00000506801.5:ENST00000503016.5:ENST00000510824.5:ENST00000507546.5:ENST00000513641.5:ENST00000425583.6:ENST00000508293.5:ENST00000513391.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	91	2	1.78703	2.1124	2.43777	0.0240043	0.00144299	0.119664	0.034834
chr2	32363358	32363457	730841	0	+	0.272727	[0,0.28]	chr2	84274	55	INTRON	INTRON	BIRC6	ENSG00000115760.15	ENST00000421745.7:ENST00000648282.1	protein_coding	protein_coding	protein_coding	protein_coding	3	49	2	1.95356	2.112375	2.27119	0.070351	0.0463152	0.184298	0.166231
chr4	39703880	39703980	1953049	0	+	0.25	[0,0.28]	chr4	195630	51	INTRON	INTRON	UBE2K	ENSG00000078140.14	ENST00000510934.5:ENST00000261427.10:ENST00000438068.6:ENST00000513231.5:ENST00000503368.5:ENST00000445950.2:ENST00000510719.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	49	2	1.95356	2.112375	2.27119	0.070351	0.0463152	0.184298	0.166231
chr5	154809003	154809103	2527563	0	+	0.28	[0,0.28]	chr5	241698	4	SS5_PROX	SS5_PROX:INTRON	LARP1	ENSG00000155506.19	ENST00000687700.1:ENST00000336314.9:ENST00000690816.1:ENST00000518297.6:ENST00000685946.1:ENST00000685355.1:ENST00000688232.1:ENST00000519194.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	49	2	1.95356	2.112375	2.27119	0.070351	0.0463152	0.184298	0.166231
chr7	121154441	121154541	3395313	0	+	0.15	[0,0.28]	chr7	317781	44	INTRON	INTRON	CPED1	ENSG00000106034.18	ENST00000310396.10:ENST00000450913.6:ENST00000423795.5:ENST00000466055.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	49	2	1.95356	2.112375	2.27119	0.070351	0.0463152	0.184298	0.166231
chr17	62060574	62060673	6810834	0	-	0.50505	(0.476,0.515]	chr17	672952	75	INTRON	INTRON	MED13	ENSG00000108510.10	ENST00000397786.7	protein_coding	protein_coding	protein_coding	protein_coding	9	97	2	1.62782	2.11227	2.59672	0.0274391	6.3664e-4	0.123904	0.0228285
chr4	110191751	110191851	2227666	0	-	0.38	(0.378,0.408]	chr4	218024	858	INTRON	INTRON	ELOVL6	ENSG00000170522.10	ENST00000394607.7:ENST00000302274.8:ENST00000514184.5:ENST00000506625.5:ENST00000506461.1:ENST00000503885.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	11	120	2	1.75854	2.11225	2.46596	0.0106517	0.00125753	0.0861859	0.03295
chr17	31885038	31885138	6752745	0	-	0.42	(0.408,0.44]	chr17	663776	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	UTP6	ENSG00000108651.10	ENST00000261708.9:ENST00000477128.5:ENST00000583408.5:ENST00000490218.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	56	2	1.81759	2.1121	2.40661	0.0316273	0.011475	0.144405	0.0888882
chr13	24888525	24888622	5563328	0	-	0.42268	(0.408,0.44]	chr13	531722	18	INTRON	INTRON	CENPJ	ENSG00000151849.16	ENST00000381884.9:ENST00000616936.4:ENST00000545981.6:ENST00000471870.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	49	2	1.40374	2.1120799999999997	2.82042	0.0721345	0.0120121	0.187433	0.0962115
chr1	42683866	42683966	83957	0	+	0.35	(0.32,0.35]	chr1	11019	4	SS5_PROX	SS5_PROX:INTRON	YBX1	ENSG00000065978.19	ENST00000321358.12:ENST00000332220.10:ENST00000436427.1:ENST00000467957.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	89	2	1.86816	2.112035	2.35591	0.0138355	0.0128129	0.0990564	0.0952812
chr10	68517550	68517646	4640184	0	-	0.510417	(0.476,0.515]	chr10	426804	4	EXON_LNCRNA	EXON_LNCRNA:SS3_PROX:INTRON	SLC25A16	ENSG00000122912.15	ENST00000609923.6:ENST00000265870.7:ENST00000493963.5:ENST00000491102.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	44	2	1.83961	2.112015	2.38442	0.0417472	0.0314489	0.161736	0.13151
chr11	68484682	68484782	4817572	0	+	0.5	(0.476,0.515]	chr11	448907	235	INTRON	INTRON	PPP6R3	ENSG00000110075.15	ENST00000530427.5:ENST00000528635.5:ENST00000529907.5:ENST00000533127.5:ENST00000534534.5:ENST00000529344.5:ENST00000524845.5:ENST00000393800.7:ENST00000265637.8:ENST00000524904.5:ENST00000393801.7:ENST00000265636.9:ENST00000529710.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	44	2	1.83961	2.112015	2.38442	0.0417472	0.0314489	0.161736	0.13151
chr1	113106512	113106608	188445	0	+	0.541667	(0.515,0.57]	chr1	20912	24	INTRON	INTRON	LRIG2	ENSG00000198799.12	ENST00000361127.6:ENST00000466069.5:ENST00000492207.5:ENST00000466161.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	65	2	1.68687	2.11196	2.53705	0.0300837	0.00186194	0.129186	0.039946
chr7	131425251	131425350	3417424	0	+	0.363636	(0.35,0.378]	chr7	319231	102	INTRON	INTRON	MKLN1	ENSG00000128585.18	ENST00000421797.6:ENST00000352689.11:ENST00000494785.5:ENST00000458153.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	79	2	1.28277	2.11194	2.94111	0.0385043	0.0104563	0.159277	0.0855102
chr11	66640245	66640339	4811045	0	+	0.457447	(0.44,0.476]	chr11	447892	1	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	RBM14-RBM4:RBM4	ENSG00000248643.5:ENSG00000173933.21	ENST00000412278.2:ENST00000421355.1:ENST00000500635.2:ENST00000396053.9:ENST00000408993.6:ENST00000578778.5:ENST00000398692.8:ENST00000483858.5:ENST00000310092.12:ENST00000510173.6:ENST00000528039.5:ENST00000506523.6:ENST00000530235.1:ENST00000532968.1:ENST00000409406.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	63	2	1.88483	2.11191	2.33899	0.0149825	0.0142027	0.107704	0.0959987
chr17	31990671	31990770	6596222	0	+	0.292929	(0.28,0.32]	chr17	641589	18	INTRON	INTRON	SUZ12	ENSG00000178691.11	ENST00000322652.10:ENST00000580398.1	protein_coding	protein_coding	protein_coding	protein_coding	7	77	2	1.6518	2.111875	2.57195	0.0331711	0.0193817	0.133994	0.119831
chr1	6220104	6220203	5296	0	+	0.40404	(0.378,0.408]	chr1	1016	8	UTR3	UTR3:EXON_MRNA	RNF207	ENSG00000158286.13	ENST00000377939.5:ENST00000496676.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	51	2	1.43665	2.11185	2.78705	0.0669652	0.0135539	0.183051	0.101363
chr1	182857703	182857803	273170	0	+	0.36	(0.35,0.378]	chr1	31902	2	SS3_PROX	SS3_PROX:INTRON	DHX9	ENSG00000135829.17	ENST00000367549.4	protein_coding	protein_coding	protein_coding	protein_coding	5	51	2	1.4414	2.11176	2.78212	0.0629423	0.0168532	0.196658	0.103549
chr5	104306273	104306373	2443478	0	+	0.37	(0.35,0.378]	chr5	234410	2010	INTRON	INTRON	LINC02163	ENSG00000251026.2	ENST00000662211.1:ENST00000666145.1	lncRNA	lncRNA	lncRNA	lncRNA	5	51	2	1.4414	2.11176	2.78212	0.0629423	0.0168532	0.196658	0.103549
chr15	74469012	74469111	6061647	0	+	0.565657	(0.515,0.57]	chr15	577120	25	INTRON	INTRON	UBL7-DT	ENSG00000247240.9	ENST00000657781.2:ENST00000659591.2:ENST00000499217.6:ENST00000666989.2:ENST00000564137.5:ENST00000691484.1:ENST00000664892.1:ENST00000693152.1:ENST00000564621.2:ENST00000567286.5:ENST00000568853.1:ENST00000670462.1	lncRNA	lncRNA	lncRNA	lncRNA	4	36	2	1.88259	2.1117299999999997	2.34087	0.0469761	0.0251849	0.151917	0.133519
chr2	47791821	47791920	777126	0	+	0.464646	(0.44,0.476]	chr2	87419	3	INTRON	INTRON	MSH6	ENSG00000116062.18	ENST00000652107.1:ENST00000445503.5:ENST00000614496.4:ENST00000456246.1:ENST00000234420.11:ENST00000673922.1:ENST00000673637.1:ENST00000540021.6:ENST00000455383.5:ENST00000538136.1:ENST00000420813.5:ENST00000411819.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	55	2	2.03266	2.11172	2.19078	0.0226089	0.0155853	0.117489	0.109411
chr1	162575779	162575879	238461	0	+	0.45	(0.44,0.476]	chr1	28704	91	INTRON	INTRON	UAP1	ENSG00000117143.14	ENST00000367925.6:ENST00000367926.9	protein_coding	protein_coding	protein_coding	protein_coding	14	148	2	1.90311	2.111705	2.3203	0.00335678	0.00112291	0.0531823	0.0306963
chr7	155780398	155780496	3453280	0	+	0.459184	(0.44,0.476]	chr7	322755	54	UTR3	UTR3:EXON_MRNA	RBM33	ENSG00000184863.11	ENST00000401878.8:ENST00000341148.7	protein_coding	protein_coding	protein_coding	protein_coding	8	80	2	1.98148	2.111685	2.24189	0.0193405	0.00431586	0.108861	0.0599409
chr5	146156611	146156708	2747142	0	-	0.474227	(0.44,0.476]	chr5	258848	23	INTRON	INTRON	LARS1	ENSG00000133706.19	ENST00000674174.1:ENST00000674170.1:ENST00000674479.1:ENST00000674309.1:ENST00000674218.1:ENST00000674467.1:ENST00000674290.1:ENST00000674447.1:ENST00000674270.1:ENST00000674383.1:ENST00000674191.1:ENST00000674158.1:ENST00000394434.7:ENST00000674398.1:ENST00000674277.1:ENST00000274562.13:ENST00000510191.5:ENST00000674310.1:ENST00000512412.2:ENST00000674417.1:ENST00000674450.1:ENST00000674412.1:ENST00000618084.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	70	2	1.70763	2.111585	2.51554	0.0190437	0.00777207	0.118994	0.0757731
chr1	35457432	35457531	420873	0	-	0.313131	(0.28,0.32]	chr1	50772	8	INTRON	INTRON	KIAA0319L	ENSG00000142687.18	ENST00000325722.8:ENST00000426982.6:ENST00000485551.5:ENST00000440579.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	44	2	1.76293	2.111555	2.46018	0.0766478	0.0375904	0.196164	0.156054
chr2	65120397	65120497	1142865	0	-	0.4	(0.378,0.408]	chr2	122186	152	INTRON	INTRON	RAB1A	ENSG00000138069.18	ENST00000649427.1:ENST00000494188.1:ENST00000409784.8:ENST00000409892.5:ENST00000409751.1:ENST00000398529.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	101	2	1.95026	2.1115500000000003	2.27284	0.0138007	0.00173415	0.095051	0.03851
chr5	32380970	32381070	2598675	0	-	0.28	[0,0.28]	chr5	246884	4	INTRON	INTRON	ZFR	ENSG00000056097.16	ENST00000265069.13:ENST00000510369.5:ENST00000507465.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	51	2	1.85666	2.111515	2.36637	0.0660997	0.0500615	0.181924	0.17488
chr3	14471704	14471804	1370102	0	+	0.41	(0.408,0.44]	chr3	144372	1	SS3_PROX	SS3_PROX:INTRON	SLC6A6	ENSG00000131389.18	ENST00000613060.4:ENST00000618278.4:ENST00000610642.4:ENST00000649500.1:ENST00000622186.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	95	2	1.49971	2.11147	2.72323	0.0298505	0.00114246	0.142135	0.0307966
chr5	113010159	113010255	2453729	0	+	0.385417	(0.378,0.408]	chr5	235119	18	INTRON	INTRON	DCP2	ENSG00000172795.17	ENST00000515408.5:ENST00000513585.6:ENST00000389063.3:ENST00000674880.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	97	2	2.04984	2.1113999999999997	2.17296	0.0110512	0.00321033	0.0873897	0.0522684
chr12	62364932	62365031	5150613	0	+	0.40404	(0.378,0.408]	chr12	487365	91	INTRON	INTRON	USP15	ENSG00000135655.16	ENST00000353364.7:ENST00000280377.10:ENST00000547317.5:ENST00000549268.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	79	2	2.0848	2.1113850000000003	2.13797	0.0124882	0.00697927	0.0923444	0.0754576
chr16	1744956	1745054	6275854	0	+	0.387755	(0.378,0.408]	chr16	599574	16	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	MAPK8IP3	ENSG00000138834.15	ENST00000685674.1:ENST00000250894.8:ENST00000673691.1:ENST00000356010.9:ENST00000610761.2:ENST00000564098.5:ENST00000561765.1:ENST00000568271.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	79	2	2.0848	2.1113850000000003	2.13797	0.0124882	0.00697927	0.0923444	0.0754576
chr1	174881795	174881895	264373	0	+	0.31	(0.28,0.32]	chr1	30911	38	INTRON	INTRON	RABGAP1L	ENSG00000152061.24	ENST00000251507.8:ENST00000681986.1:ENST00000529145.6:ENST00000325589.9:ENST00000469553.6:ENST00000367687.5:ENST00000347255.6:ENST00000489615.5:ENST00000478442.5:ENST00000465412.5:ENST00000486220.5:ENST00000392064.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	85	2	1.9021	2.11131	2.32052	0.0304779	0.00612675	0.130699	0.0708525
chr3	6513664	6513764	1356377	0	+	0.53	(0.515,0.57]	chr3	142508	5	INTRON	INTRON	ENSG00000189229	ENSG00000189229.12	ENST00000660158.1:ENST00000433639.1:ENST00000655754.1:ENST00000653839.1:ENST00000662846.1:ENST00000659876.1:ENST00000414438.2:ENST00000658468.1:ENST00000414603.1:ENST00000669512.1:ENST00000667028.1:ENST00000655541.1:ENST00000668643.1:ENST00000671568.1:ENST00000671036.1:ENST00000669798.1:ENST00000655753.1:ENST00000655856.1:ENST00000658398.1:ENST00000661518.1:ENST00000661279.1:ENST00000655495.1:ENST00000663041.1:ENST00000659827.1:ENST00000667716.1:ENST00000662508.1:ENST00000668416.1:ENST00000658133.1:ENST00000659651.1:ENST00000342990.4:ENST00000660054.1:ENST00000671370.1	lncRNA	lncRNA	lncRNA	lncRNA	36	322	2	2.00195	2.111275	2.2206	2.87002e-4	1.04746e-4	0.0150568	0.00920724
chr11	13717823	13717922	4742815	0	+	0.393939	(0.378,0.408]	chr11	439210	21	INTRON	INTRON	FAR1	ENSG00000197601.13	ENST00000354817.8	protein_coding	protein_coding	protein_coding	protein_coding	9	88	2	1.78596	2.111265	2.43657	0.0106733	0.00765583	0.0861859	0.0779344
chr18	36791835	36791934	6963999	0	-	0.434343	(0.408,0.44]	chr18	689209	13	INTRON	INTRON	TPGS2	ENSG00000134779.15	ENST00000590258.2:ENST00000590652.5:ENST00000614939.4:ENST00000587129.5:ENST00000610723.4:ENST00000590842.5:ENST00000591906.5:ENST00000587382.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	43	2	1.64062	2.111205	2.58179	0.0557275	0.024638	0.165463	0.131869
chr8	129349315	129349413	4058753	0	-	0.428571	(0.408,0.44]	chr8	369545	42	INTRON	INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000657400.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1	lncRNA	lncRNA	lncRNA	lncRNA	4	43	2	1.64062	2.111205	2.58179	0.0557275	0.024638	0.165463	0.131869
chr11	9298383	9298483	4909273	0	-	0.45	(0.44,0.476]	chr11	460156	26	INTRON	INTRON	TMEM41B	ENSG00000166471.11	ENST00000524543.5:ENST00000528080.6:ENST00000299596.8:ENST00000611268.4:ENST00000527813.5:ENST00000533723.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	18	190	2	1.92652	2.111195	2.29587	0.00669501	1.42916e-4	0.0707084	0.0103609
chr7	148810514	148810614	3670001	0	-	0.41	(0.408,0.44]	chr7	340548	1	SS3_PROX	SS3_PROX:INTRON	EZH2	ENSG00000106462.12	ENST00000683292.1:ENST00000320356.7:ENST00000492143.5:ENST00000478654.5:ENST00000350995.6:ENST00000460911.5:ENST00000684400.1:ENST00000683744.1:ENST00000684510.1:ENST00000682317.1:ENST00000683293.1:ENST00000682263.1:ENST00000684300.1:ENST00000476773.5:ENST00000483967.5:ENST00000684436.1:ENST00000469631.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	43	2	2.03431	2.11119	2.18807	0.0708044	0.0154896	0.184528	0.108998
chr10	68362490	68362589	4638694	0	-	0.545455	(0.515,0.57]	chr10	426535	67	INTRON	INTRON	RUFY2	ENSG00000204130.14	ENST00000466493.5:ENST00000484083.5:ENST00000463210.6:ENST00000602465.6:ENST00000388768.6:ENST00000265865.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	45	2	1.38719	2.1111	2.83501	0.0540435	0.0117686	0.181713	0.0894475
chr7	73687395	73687495	3331607	0	+	0.47	(0.44,0.476]	chr7	309884	3	SS5_PROX	SS5_PROX:INTRON	BUD23	ENSG00000071462.12	ENST00000432522.5:ENST00000421744.5:ENST00000265758.7:ENST00000496153.5:ENST00000478670.5:ENST00000441822.5:ENST00000436944.5:ENST00000428163.5:ENST00000463307.5:ENST00000423497.5:ENST00000430270.5:ENST00000487006.2:ENST00000430446.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	47	2	1.93084	2.1110499999999996	2.29126	0.0443175	0.0165638	0.162302	0.102621
chr18	9937963	9938062	6873589	0	+	0.292929	(0.28,0.32]	chr18	680892	5	INTRON	INTRON	VAPA	ENSG00000101558.14	ENST00000400000.7:ENST00000340541.4:ENST00000584796.5:ENST00000583879.5:ENST00000583475.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	13	174	2	1.53668	2.111015	2.68535	0.0246026	2.85494e-4	0.12011	0.0150568
chr5	10366234	10366333	2317772	0	+	0.363636	(0.35,0.378]	chr5	224612	112	INTRON	INTRON	MARCHF6	ENSG00000145495.16	ENST00000274140.10:ENST00000449913.6:ENST00000502795.5:ENST00000511802.5:ENST00000503788.5:ENST00000640713.1:ENST00000510872.5:ENST00000507863.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	116	2	1.54885	2.11101	2.67317	0.0295814	4.65906e-4	0.128519	0.0195589
chr12	21508457	21508557	5094426	0	+	0.36	(0.35,0.378]	chr12	481147	1	CDS_START	CDS_START:CDS:UTR3:EXON_MRNA:INTRON	GOLT1B	ENSG00000111711.10	ENST00000535593.5:ENST00000229314.10:ENST00000542038.5:ENST00000540141.5:ENST00000545093.5:ENST00000539663.5:ENST00000539025.5:ENST00000542194.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	11	103	2	1.49035	2.110995	2.73164	0.0178342	0.00387645	0.113684	0.0543578
chr20	47296950	47297048	7348910	0	-	0.306122	(0.28,0.32]	chr20	749330	18	INTRON	INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000467200.6:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000468376.2:ENST00000435836.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	81	2	1.4428	2.1109850000000003	2.77917	0.0712927	0.00285651	0.185716	0.0494641
chr4	55400548	55400647	1960635	0	+	0.525253	(0.515,0.57]	chr4	196546	9	INTRON	INTRON	TMEM165	ENSG00000134851.13	ENST00000381334.10:ENST00000506198.5:ENST00000508404.5:ENST00000511710.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	22	189	2	1.95099	2.1109850000000003	2.27098	6.702e-4	5.14908e-4	0.0235011	0.0208667
chr17	81914794	81914886	6850407	0	-	0.565217	(0.515,0.57]	chr17	678501	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	SIRT7	ENSG00000187531.14	ENST00000328666.11:ENST00000536038.5:ENST00000571832.5:ENST00000572976.5:ENST00000574992.5:ENST00000572902.5:ENST00000572350.5:ENST00000577065.5:ENST00000574495.6:ENST00000573367.5:ENST00000571915.5:ENST00000575360.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	30	2	1.8707	2.110975	2.35125	0.0523213	0.0436431	0.162255	0.160182
chr2	148647648	148647748	891781	0	+	0.57	(0.515,0.57]	chr2	98781	17	INTRON	INTRON	EPC2	ENSG00000135999.12	ENST00000457184.5:ENST00000258484.11:ENST00000409654.5:ENST00000397424.2	protein_coding	protein_coding	protein_coding	protein_coding	3	30	2	1.8707	2.110975	2.35125	0.0523213	0.0436431	0.162255	0.160182
chr12	50156008	50156107	5323062	0	-	0.525253	(0.515,0.57]	chr12	507529	13	INTRON	INTRON	CERS5	ENSG00000139624.14	ENST00000317551.12:ENST00000422340.6:ENST00000551697.5:ENST00000380189.8:ENST00000547787.5:ENST00000438450.6:ENST00000542320.5:ENST00000547800.2:ENST00000549389.5:ENST00000550258.5:ENST00000547455.5:ENST00000546514.1:ENST00000549942.1:ENST00000550899.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	40	2	1.94945	2.110915	2.27238	0.0414068	0.0161808	0.161557	0.101453
chr22	49655723	49655823	7602645	0	-	0.57	(0.515,0.57]	chr22	778594	283	INTRON	INTRON	MIR3667HG	ENSG00000188511.13	ENST00000414287.5:ENST00000416411.1:ENST00000689875.1:ENST00000400023.5:ENST00000405854.5	lncRNA	lncRNA	lncRNA	lncRNA	4	40	2	1.94945	2.110915	2.27238	0.0414068	0.0161808	0.161557	0.101453
chrX	13754105	13754200	7623437	0	+	0.526316	(0.515,0.57]	chrX	780500	8	UTR3	UTR3:EXON_MRNA:INTRON	OFD1	ENSG00000046651.16	ENST00000380567.6:ENST00000684577.1:ENST00000683427.1:ENST00000683284.1:ENST00000683713.1:ENST00000340096.11:ENST00000682953.1:ENST00000682237.1:ENST00000464463.6:ENST00000683655.1:ENST00000682562.1:ENST00000398395.8:ENST00000380550.6:ENST00000683055.1:ENST00000490265.6:ENST00000683454.1:ENST00000683637.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	40	2	1.94945	2.110915	2.27238	0.0414068	0.0161808	0.161557	0.101453
chr20	62936095	62936195	7362552	0	-	0.62	(0.57,1]	chr20	751216	69	INTRON	INTRON	DIDO1	ENSG00000101191.17	ENST00000266070.8:ENST00000370371.8	protein_coding	protein_coding	protein_coding	protein_coding	6	33	2	1.79898	2.1109	2.42282	0.0206524	0.00879576	0.122348	0.0790073
chr19	10317453	10317513	7135338	0	-	0.6	(0.57,1]	chr19	719324	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	RAVER1	ENSG00000161847.14	ENST00000617231.5:ENST00000592208.5:ENST00000611074.4:ENST00000615032.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	29	2	1.74185	2.11089	2.47993	0.0401765	0.007207	0.143911	0.0756278
chr11	2948626	2948726	4891535	0	-	0.38	(0.378,0.408]	chr11	458261	26	INTRON	INTRON	NAP1L4	ENSG00000205531.13	ENST00000620138.4:ENST00000380542.9:ENST00000469805.5:ENST00000469089.5:ENST00000526115.5:ENST00000492594.6:ENST00000526023.5:ENST00000492685.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	12	127	2	1.99165	2.11081	2.22997	0.00477089	0.00222444	0.0602209	0.0435144
chr2	171137253	171137353	1263863	0	-	0.38	(0.378,0.408]	chr2	133921	190	INTRON	INTRON	TLK1	ENSG00000198586.14	ENST00000431350.7:ENST00000360843.7:ENST00000359766.7:ENST00000521943.5:ENST00000409443.6:ENST00000413010.5:ENST00000470340.1:ENST00000466220.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	66	2	1.39189	2.11078	2.82967	0.0751636	0.00189968	0.193731	0.0402736
chr22	16605992	16606091	7473400	0	+	0.272727	[0,0.28]	chr22	761972	34	INTRON	INTRON	TPTEP1:ENSG00000283633	ENSG00000100181.22:ENSG00000283633.1	ENST00000558085.6:ENST00000400593.6:ENST00000592918.5:ENST00000592107.5:ENST00000426585.5:ENST00000591299.1	lncRNA	lncRNA	lncRNA:transcribed_unprocessed_pseudogene	lncRNA:processed_transcript	17	265	2	1.96363	2.110775	2.25792	0.0078336	6.56671e-4	0.076075	0.0232396
chr17	66310123	66310222	6662372	0	+	0.313131	(0.28,0.32]	chr17	650320	36	INTRON	INTRON	PRKCA	ENSG00000154229.12	ENST00000413366.8:ENST00000578063.5:ENST00000583361.1:ENST00000284384.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	59	2	2.08149	2.110755	2.14002	0.031124	0.0304107	0.143644	0.130461
chr5	10368127	10368227	2317791	0	+	0.38	(0.378,0.408]	chr5	224612	131	INTRON	INTRON	MARCHF6	ENSG00000145495.16	ENST00000274140.10:ENST00000449913.6:ENST00000502795.5:ENST00000511802.5:ENST00000503788.5:ENST00000640713.1:ENST00000510872.5:ENST00000507863.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	66	2	1.56313	2.11064	2.65815	0.0474151	0.00391167	0.153019	0.0569957
chr16	56933515	56933615	6361151	0	+	0.44	(0.408,0.44]	chr16	610598	2	SS5_PROX	SS5_PROX:INTRON	HERPUD1	ENSG00000051108.15	ENST00000439977.7:ENST00000562914.1:ENST00000300302.9:ENST00000344114.8:ENST00000565966.5:ENST00000569569.5:ENST00000568676.5:ENST00000570273.5:ENST00000379792.6:ENST00000569429.5:ENST00000563343.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	85	2	2.02591	2.110575	2.19524	0.00990486	0.00531945	0.0838372	0.0660391
chr1	53836417	53836516	460595	0	-	0.353535	(0.35,0.378]	chr1	55451	4	INTRON	INTRON	NDC1	ENSG00000058804.12	ENST00000371429.4:ENST00000480952.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	37	2	1.9755	2.110425	2.24535	0.0647516	0.0398617	0.179192	0.161534
chr1	180500065	180500164	595809	0	-	0.363636	(0.35,0.378]	chr1	71210	42	INTRON	INTRON	ACBD6	ENSG00000230124.8	ENST00000645415.1:ENST00000642319.1:ENST00000367595.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	37	2	1.9755	2.110425	2.24535	0.0647516	0.0398617	0.179192	0.161534
chr13	19686398	19686498	5551969	0	-	0.36	(0.35,0.378]	chr13	530672	74	INTRON	INTRON	PSPC1	ENSG00000121390.19	ENST00000471658.5:ENST00000492741.5:ENST00000635562.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	3	37	2	1.9755	2.110425	2.24535	0.0647516	0.0398617	0.179192	0.161534
chr16	70539607	70539707	6385305	0	+	0.36	(0.35,0.378]	chr16	613910	4	SS5_PROX	SS5_PROX:INTRON	SF3B3	ENSG00000189091.13	ENST00000302516.10:ENST00000572365.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	37	2	1.9755	2.110425	2.24535	0.0647516	0.0398617	0.179192	0.161534
chr6	167029370	167029468	3033676	0	+	0.357143	(0.35,0.378]	chr6	282680	10	INTRON	INTRON	CEP43	ENSG00000213066.13	ENST00000622353.4:ENST00000366847.9:ENST00000349556.4:ENST00000488525.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	37	2	1.9755	2.110425	2.24535	0.0647516	0.0398617	0.179192	0.161534
chr20	41089697	41089796	7274121	0	+	0.484848	(0.476,0.515]	chr20	739249	48	INTRON	INTRON	TOP1	ENSG00000198900.7	ENST00000361337.3:ENST00000681113.1:ENST00000681058.1:ENST00000681392.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	84	2	1.80755	2.110375	2.4132	0.0131326	0.00417094	0.0999551	0.0570595
chr12	69270503	69270602	5163827	0	+	0.353535	(0.35,0.378]	chr12	489054	11	UTR3	UTR3:EXON_MRNA	CPSF6	ENSG00000111605.18	ENST00000435070.7:ENST00000650046.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	130	2	1.95184	2.1103	2.26876	0.0052326	0.00261007	0.0656295	0.0455413
chr16	54921161	54921261	6488454	0	-	0.35	(0.32,0.35]	chr16	627574	48	EXON_LNCRNA	EXON_LNCRNA:INTRON	CRNDE	ENSG00000245694.11	ENST00000613942.2:ENST00000661493.1:ENST00000668556.1:ENST00000660344.1:ENST00000502066.7:ENST00000559598.7:ENST00000688921.1:ENST00000501177.9:ENST00000661312.1:ENST00000689582.1:ENST00000558031.7:ENST00000689375.1:ENST00000691307.1:ENST00000657142.1:ENST00000557792.2:ENST00000559432.6:ENST00000655114.1:ENST00000560912.6:ENST00000558952.2	lncRNA	lncRNA	lncRNA	lncRNA	7	91	2	1.81388	2.11026	2.40664	0.0371014	0.00189533	0.139201	0.0402736
chr8	37867948	37868046	3935623	0	-	0.520408	(0.515,0.57]	chr8	360553	45	INTRON	INTRON	RAB11FIP1	ENSG00000156675.16	ENST00000330843.9:ENST00000287263.8:ENST00000522727.5:ENST00000523182.5:ENST00000522774.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	65	2	2.01978	2.110105	2.20043	0.0165522	0.00392045	0.102621	0.0570863
chr15	72521532	72521632	6059634	0	+	0.48	(0.476,0.515]	chr15	576864	30	INTRON	INTRON	ARIH1	ENSG00000166233.15	ENST00000379887.9:ENST00000570085.5:ENST00000564062.1:ENST00000567762.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	76	2	1.48441	2.1100250000000003	2.73564	0.0315624	0.00333144	0.144381	0.0512081
chr7	127705145	127705245	3402937	0	+	0.34	(0.32,0.35]	chr7	318117	2	SS5_PROX	SS5_PROX:INTRON	SND1	ENSG00000197157.11	ENST00000354725.8	protein_coding	protein_coding	protein_coding	protein_coding	6	78	2	1.81388	2.110025	2.40617	0.0371014	0.0040507	0.139201	0.0578376
chr6	28142363	28142463	2839327	0	+	0.36	(0.35,0.378]	chr6	266501	1	SS5_PROX	SS5_PROX:INTRON	ZKSCAN8	ENSG00000198315.11	ENST00000330236.7:ENST00000606198.5:ENST00000457389.6:ENST00000536028.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	61	2	1.87726	2.11002	2.34278	0.0297629	0.0129593	0.12908	0.0991015
chr21	37427869	37427968	7406838	0	+	0.262626	[0,0.28]	chr21	754879	17	INTRON	INTRON	DYRK1A	ENSG00000157540.22	ENST00000646523.1:ENST00000647425.1:ENST00000647188.2:ENST00000647504.1:ENST00000644942.1:ENST00000338785.8:ENST00000643624.1:ENST00000643551.1:ENST00000426672.6:ENST00000398960.7:ENST00000646548.1:ENST00000645424.1:ENST00000643854.1:ENST00000455097.6:ENST00000642309.1:ENST00000645774.1:ENST00000398956.2	protein_coding	protein_coding	protein_coding	protein_coding	6	78	2	1.62448	2.1099799999999997	2.59548	0.0346067	0.0302032	0.142761	0.136649
chr21	10341357	10341451	7427435	0	-	0.351064	(0.35,0.378]	chr21	757681	5	INTRON	INTRON	ENSG00000277693	ENSG00000277693.2	ENST00000622592.1:ENST00000616952.1:ENST00000667012.1	lncRNA	lncRNA	lncRNA	lncRNA	7	83	2	2.0847	2.10997	2.13524	0.0130865	0.00719316	0.0934394	0.0756118
chr3	191425704	191425804	1590184	0	+	0.37	(0.35,0.378]	chr3	164636	1	SS5_PROX	SS5_PROX:INTRON	ENSG00000223812	ENSG00000223812.8	ENST00000657540.1:ENST00000439804.6:ENST00000663647.1:ENST00000668751.1:ENST00000666632.1:ENST00000664732.1:ENST00000662007.1:ENST00000641158.1:ENST00000664994.1:ENST00000669884.1:ENST00000642133.1:ENST00000656380.1:ENST00000641055.1:ENST00000662578.1:ENST00000661668.1:ENST00000658347.1:ENST00000661029.1:ENST00000651548.2:ENST00000669360.1:ENST00000653490.1:ENST00000656942.1:ENST00000666456.1:ENST00000668276.1:ENST00000671595.1:ENST00000660290.1	lncRNA	lncRNA	lncRNA	lncRNA	4	50	2	1.98929	2.1098600000000003	2.23043	0.0417909	0.0187487	0.147075	0.117523
chr6	143442076	143442175	3242283	0	-	0.373737	(0.35,0.378]	chr6	301155	2	INTRON	INTRON	ADAT2	ENSG00000189007.16	ENST00000237283.9	protein_coding	protein_coding	protein_coding	protein_coding	4	50	2	1.98929	2.1098600000000003	2.23043	0.0417909	0.0187487	0.147075	0.117523
chr5	66016723	66016823	2371756	0	+	0.46	(0.44,0.476]	chr5	228522	16	INTRON	INTRON	ERBIN	ENSG00000112851.15	ENST00000380943.6:ENST00000416865.6:ENST00000380935.5:ENST00000284037.10:ENST00000380938.6:ENST00000511297.5:ENST00000506030.5:ENST00000508515.1	protein_coding	protein_coding	protein_coding	protein_coding	5	55	2	1.92837	2.1098149999999998	2.29126	0.0222222	0.0165638	0.124303	0.102621
chr19	34380422	34380522	7052645	0	+	0.48	(0.476,0.515]	chr19	703395	2	SS3_PROX	SS3_PROX:INTRON	GPI	ENSG00000105220.17	ENST00000415930.8:ENST00000588991.7:ENST00000356487.11:ENST00000647446.1:ENST00000586425.2:ENST00000643067.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	31	320	2	1.98522	2.1097099999999998	2.2342	0.00116537	8.63439e-5	0.0312127	0.00783027
chr16	24544668	24544768	6327706	0	+	0.3	(0.28,0.32]	chr16	605824	35	INTRON	INTRON	RBBP6	ENSG00000122257.20	ENST00000564314.5:ENST00000567686.5:ENST00000568015.5:ENST00000319715.10:ENST00000452655.6:ENST00000381039.7:ENST00000646282.1:ENST00000348022.6	protein_coding	protein_coding	protein_coding	protein_coding	4	52	2	1.76378	2.109615	2.45545	0.0438092	0.0395495	0.161534	0.14901
chr4	73218478	73218578	2160423	0	-	0.52	(0.515,0.57]	chr4	212794	406	INTRON	INTRON	ANKRD17	ENSG00000132466.20	ENST00000358602.9:ENST00000558247.5:ENST00000330838.10:ENST00000509867.6:ENST00000561029.1:ENST00000559367.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	59	2	1.81744	2.10961	2.40178	0.031028	0.00382306	0.143457	0.0542786
chr22	19494602	19494702	7476986	0	+	0.33	(0.32,0.35]	chr22	762416	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	CDC45	ENSG00000093009.11	ENST00000407835.6:ENST00000437685.6:ENST00000483431.5:ENST00000438587.6:ENST00000672837.1:ENST00000263201.7:ENST00000404724.7:ENST00000487669.5:ENST00000428937.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	55	2	1.95271	2.109555	2.2664	0.0431213	0.0199969	0.162255	0.109608
chr6	31835714	31835794	2843840	0	+	0.4875	(0.476,0.515]	chr6	267907	3	SS5_PROX	SS5_PROX:INTRON	SNHG32	ENSG00000204387.14	ENST00000375640.7:ENST00000375641.6:ENST00000375635.6:ENST00000375638.7:ENST00000648677.1:ENST00000375642.6:ENST00000614363.4:ENST00000395789.5:ENST00000375633.5	lncRNA	lncRNA	lncRNA	lncRNA	25	242	2	1.66377	2.10952	2.55527	0.00371635	1.33326e-4	0.0535094	0.00996366
chr2	75917777	75917877	817337	0	+	0.34	(0.32,0.35]	chr2	91391	449	INTRON	INTRON	ENSG00000287474	ENSG00000287474.1	ENST00000670606.1	lncRNA	lncRNA	lncRNA	lncRNA	5	65	2	1.83315	2.109485	2.38582	0.0313348	0.0138529	0.144381	0.0953077
chr21	39302271	39302371	7465429	0	-	0.37	(0.35,0.378]	chr21	760568	33	INTRON	INTRON	BRWD1	ENSG00000185658.14	ENST00000333229.6:ENST00000342449.8:ENST00000380800.7:ENST00000341322.4:ENST00000470108.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	106	2	1.96703	2.109465	2.2519	0.0135243	0.0020199	0.0949306	0.0416115
chr17	27105911	27106011	6579884	0	+	0.28	[0,0.28]	chr17	639586	91	INTRON	INTRON	ENSG00000285822	ENSG00000285822.1	ENST00000649401.1	lncRNA	lncRNA	lncRNA	lncRNA	10	166	2	1.8887	2.1094600000000003	2.33022	0.0123003	0.00345911	0.0971033	0.0518902
chr16	75354484	75354583	6528498	0	-	0.363636	(0.35,0.378]	chr16	632300	481	INTRON	INTRON	CFDP1	ENSG00000153774.9	ENST00000283882.4:ENST00000564793.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	83	2	2.06612	2.109205	2.15229	0.0164908	0.00545124	0.102419	0.0669407
chr16	74590581	74590680	6525167	0	-	0.464646	(0.44,0.476]	chr16	631842	274	INTRON	INTRON	GLG1	ENSG00000090863.12	ENST00000205061.9:ENST00000422840.7:ENST00000447066.6:ENST00000562090.5:ENST00000567951.5:ENST00000627032.2:ENST00000565260.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	63	2	1.92704	2.10915	2.29126	0.0165638	0.0128054	0.102621	0.0990564
chr11	5366596	5366696	4896885	0	-	0.45	(0.44,0.476]	chr11	459187	193	INTRON	INTRON	HBG2:ENSG00000239920:HBE1:OR51B5	ENSG00000196565.15:ENSG00000239920.2:ENSG00000213931.7:ENSG00000167355.8	ENST00000380252.6:ENST00000380259.7:ENST00000292896.3:ENST00000380237.5:ENST00000420726.6:ENST00000420465.6:ENST00000415970.6:ENST00000418729.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:nonsense_mediated_decay:processed_transcript	5	49	2	1.47433	2.109025	2.74372	0.0595438	0.0153007	0.16883600000000001	0.108569
chr19	40623121	40623216	7069757	0	+	0.378947	(0.378,0.408]	chr19	706405	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	LTBP4	ENSG00000090006.18	ENST00000204005.13:ENST00000308370.11:ENST00000396819.8:ENST00000243562.13:ENST00000601032.5:ENST00000599724.5:ENST00000595118.5:ENST00000622565.4:ENST00000593463.5:ENST00000318809.11:ENST00000597816.5:ENST00000622107.4:ENST00000595665.1:ENST00000622457.1:ENST00000594116.1:ENST00000598178.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	69	2	1.86598	2.10883	2.35168	0.0300232	0.0046563	0.129138	0.0629753
chr22	41275718	41275816	7591047	0	-	0.469388	(0.44,0.476]	chr22	777367	6	INTRON	INTRON	RANGAP1	ENSG00000100401.20	ENST00000356244.8:ENST00000405486.5:ENST00000455915.6:ENST00000452543.5:ENST00000418067.1	protein_coding	protein_coding	protein_coding	protein_coding	4	41	2	1.75627	2.10881	2.46135	0.0380723	0.0374637	0.157702	0.140008
chr6	157879975	157880075	3016335	0	+	0.45	(0.44,0.476]	chr6	281379	31	INTRON	INTRON	SNX9	ENSG00000130340.17	ENST00000680863.1:ENST00000679814.1:ENST00000680464.1:ENST00000681186.1:ENST00000679732.1:ENST00000681183.1:ENST00000681534.1:ENST00000681651.1:ENST00000680089.1:ENST00000680078.1:ENST00000680974.1:ENST00000680095.1:ENST00000680015.1:ENST00000681138.1:ENST00000392185.8:ENST00000679790.1:ENST00000680495.1:ENST00000679691.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	41	2	1.75627	2.10881	2.46135	0.0380723	0.0374637	0.157702	0.140008
chr20	37518212	37518312	7340700	0	-	0.4	(0.378,0.408]	chr20	748112	9	UTR3	UTR3:EXON_MRNA:INTRON	BLCAP	ENSG00000166619.15	ENST00000467603.1:ENST00000373537.7:ENST00000397137.5:ENST00000414542.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	58	2	1.94681	2.108805	2.2708	0.0457723	0.00646593	0.149888	0.073179
chr12	53479824	53479919	5143183	0	+	0.4	(0.378,0.408]	chr12	485458	5	UTR3	UTR3:EXON_MRNA	PCBP2	ENSG00000197111.16	ENST00000546463.6:ENST00000437231.5:ENST00000447282.5:ENST00000359282.9:ENST00000359462.9:ENST00000455667.7:ENST00000550585.5:ENST00000547859.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	91	2	2.09688	2.1087949999999998	2.12071	0.00805155	0.00601933	0.0766625	0.0700813
chr6	34378065	34378165	3084628	0	-	0.45	(0.44,0.476]	chr6	288633	357	INTRON	INTRON	NUDT3:RPS10-NUDT3	ENSG00000272325.2:ENSG00000270800.3	ENST00000607016.2:ENST00000639725.1:ENST00000639877.1:ENST00000605528.2	protein_coding	protein_coding	protein_coding	protein_coding	14	143	2	1.71726	2.1087499999999997	2.50024	0.00642964	7.41088e-4	0.0730725	0.0250148
chr7	135378411	135378511	3647630	0	-	0.55	(0.515,0.57]	chr7	339120	140	INTRON	INTRON	CNOT4	ENSG00000080802.20	ENST00000541284.6:ENST00000451834.5:ENST00000423368.6:ENST00000361528.8:ENST00000473470.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	47	2	2.00468	2.108705	2.21273	0.0196151	0.0166344	0.110511	0.109486
chr11	582181	582281	4719630	0	+	0.41	(0.408,0.44]	chr11	436169	1	SS5_PROX	SS5_PROX:INTRON	PHRF1	ENSG00000070047.13	ENST00000264555.10:ENST00000416188.3:ENST00000534320.5:ENST00000413872.6:ENST00000533464.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	46	2	1.94273	2.1086850000000004	2.27464	0.0456237	0.0158016	0.149888	0.109464
chr11	662287	662386	4889146	0	-	0.424242	(0.408,0.44]	chr11	457709	21	INTRON	INTRON	DEAF1	ENSG00000177030.19	ENST00000382409.4:ENST00000527170.5:ENST00000685854.1:ENST00000683307.1:ENST00000528864.6:ENST00000525626.6:ENST00000682936.1:ENST00000690068.1:ENST00000692634.1:ENST00000687329.1:ENST00000686001.1:ENST00000689835.1:ENST00000525904.5:ENST00000530813.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	46	2	1.94273	2.1086850000000004	2.27464	0.0456237	0.0158016	0.149888	0.109464
chr9	123263239	123263339	4340428	0	-	0.48	(0.476,0.515]	chr9	398963	259	INTRON	INTRON	STRBP	ENSG00000165209.19	ENST00000348403.10:ENST00000360998.3:ENST00000407982.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	55	2	1.58335	2.108655	2.63396	0.0640461	0.00426634	0.177882	0.0596808
chr6	26539200	26539300	2838149	0	+	0.38	(0.378,0.408]	chr6	266269	3	INTRON	INTRON	HMGN4	ENSG00000182952.5	ENST00000377575.3:ENST00000477243.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	79	2	1.75204	2.108565	2.46509	0.0268575	0.00287152	0.123442	0.0494641
chr8	73293050	73293150	3967595	0	-	0.41	(0.408,0.44]	chr8	364039	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPL7	ENSG00000147604.14	ENST00000352983.7:ENST00000396467.5:ENST00000396466.5:ENST00000396465.5:ENST00000431653.1	protein_coding	protein_coding	protein_coding	protein_coding	17	158	2	1.57576	2.108515	2.64127	0.00807809	0.00125199	0.0766625	0.0328543
chr1	193038951	193039051	612664	0	-	0.35	(0.32,0.35]	chr1	72474	89	INTRON	INTRON	UCHL5	ENSG00000116750.14	ENST00000367455.8:ENST00000367454.6:ENST00000367450.7:ENST00000367451.8:ENST00000367449.5:ENST00000367448.5:ENST00000421683.1	protein_coding	protein_coding	protein_coding	protein_coding	7	82	2	1.65179	2.108495	2.5652	0.0245569	0.00765724	0.131869	0.075364
chr5	141592044	141592143	2739919	0	-	0.313131	(0.28,0.32]	chr5	258168	34	INTRON	INTRON	DIAPH1	ENSG00000131504.18	ENST00000647433.1:ENST00000389054.8:ENST00000518047.5:ENST00000523100.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	71	2	1.83303	2.10847	2.38391	0.0370023	0.0122525	0.139194	0.0969406
chr1	30993856	30993956	412171	0	-	0.49	(0.476,0.515]	chr1	49707	8	INTRON	INTRON	PUM1	ENSG00000134644.16	ENST00000426105.7:ENST00000373747.7:ENST00000257075.9:ENST00000424085.6:ENST00000525843.5:ENST00000440538.6:ENST00000498419.5:ENST00000373741.8:ENST00000373742.6:ENST00000532678.1:ENST00000526215.5:ENST00000525948.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	55	2	1.83961	2.10846	2.37731	0.0314489	0.0111793	0.13151	0.0937192
chr11	62577880	62577970	4959642	0	-	0.5	(0.476,0.515]	chr11	466285	2	INTRON	INTRON	TUT1	ENSG00000149016.16	ENST00000308436.11:ENST00000476907.6	protein_coding	protein_coding	protein_coding	protein_coding	5	55	2	1.83961	2.10846	2.37731	0.0314489	0.0111793	0.13151	0.0937192
chr18	735915	736013	6939929	0	-	0.479592	(0.476,0.515]	chr18	686461	26	INTRON	INTRON	YES1	ENSG00000176105.14	ENST00000584307.5:ENST00000314574.5:ENST00000577961.5	protein_coding	protein_coding	protein_coding	protein_coding	5	55	2	1.83961	2.10846	2.37731	0.0314489	0.0111793	0.13151	0.0937192
chr3	43730491	43730591	1410583	0	+	0.43	(0.408,0.44]	chr3	147966	79	INTRON	INTRON	ABHD5	ENSG00000011198.10	ENST00000649763.1:ENST00000454293.2:ENST00000463153.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	119	2	1.95554	2.108445	2.26135	0.00485149	0.00236769	0.0640618	0.0437837
chr7	127784887	127784987	3403739	0	+	0.41	(0.408,0.44]	chr7	318134	631	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000468166.5:ENST00000465900.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	41	2	1.6306	2.10842	2.58624	0.0544158	0.0273686	0.182272	0.123904
chr9	131146504	131146604	4215838	0	+	0.42	(0.408,0.44]	chr9	386565	2	SS5_PROX	SS5_PROX:INTRON	NUP214	ENSG00000126883.19	ENST00000695497.1:ENST00000695498.1:ENST00000695496.1:ENST00000695495.1:ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000651022.1:ENST00000525980.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	41	2	1.6306	2.10842	2.58624	0.0544158	0.0273686	0.182272	0.123904
chr10	68523869	68523968	4640248	0	-	0.50505	(0.476,0.515]	chr10	426805	58	INTRON	INTRON	SLC25A16	ENSG00000122912.15	ENST00000609923.6:ENST00000493963.5:ENST00000491102.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	65	2	1.89682	2.108415	2.32001	0.0158424	0.0136217	0.101682	0.101453
chr20	2934783	2934883	7223177	0	+	0.49	(0.476,0.515]	chr20	733951	111	INTRON	INTRON	PTPRA	ENSG00000132670.21	ENST00000455631.5:ENST00000399903.7:ENST00000216877.10:ENST00000431048.5:ENST00000318266.9:ENST00000430705.5:ENST00000356147.3	protein_coding	protein_coding	protein_coding	protein_coding	6	65	2	1.89682	2.108415	2.32001	0.0158424	0.0136217	0.101682	0.101453
chr3	15795406	15795506	1623797	0	-	0.29	(0.28,0.32]	chr3	168019	1	SS3_PROX	SS3_PROX:INTRON	ANKRD28	ENSG00000206560.12	ENST00000399451.6:ENST00000624145.3:ENST00000683139.1:ENST00000412318.5:ENST00000497037.5:ENST00000451422.1:ENST00000498524.5:ENST00000439830.5:ENST00000461696.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	100	2	1.76048	2.10841	2.45634	0.0450149	0.0016783	0.149888	0.0380861
chr7	140467802	140467901	3661510	0	-	0.525253	(0.515,0.57]	chr7	339916	72	INTRON	INTRON	MKRN1	ENSG00000133606.11	ENST00000255977.7:ENST00000475010.5:ENST00000495305.5:ENST00000474576.5:ENST00000480552.5:ENST00000496169.5:ENST00000443720.6:ENST00000471104.5:ENST00000467513.5:ENST00000494939.1:ENST00000498535.1:ENST00000473444.1:ENST00000475180.5:ENST00000481705.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	60	2	1.77888	2.108355	2.43783	0.0139834	0.00916404	0.10247	0.0812949
chr1	100382174	100382273	172924	0	+	0.383838	(0.378,0.408]	chr1	18811	42	INTRON	INTRON	CDC14A	ENSG00000079335.20	ENST00000646665.1:ENST00000644844.1:ENST00000635056.2:ENST00000647005.1:ENST00000647203.1:ENST00000644676.1:ENST00000361544.11:ENST00000370124.8:ENST00000336454.5:ENST00000646583.1:ENST00000644813.1:ENST00000455467.6:ENST00000646563.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	88	2	1.82004	2.10834	2.39664	0.012605	0.00480522	0.0980801	0.0602209
chr3	6607441	6607541	1357318	0	+	0.33	(0.32,0.35]	chr3	142522	230	INTRON	INTRON	ENSG00000189229	ENSG00000189229.12	ENST00000433639.1:ENST00000655754.1:ENST00000658468.1:ENST00000669512.1:ENST00000667028.1:ENST00000655541.1:ENST00000668643.1:ENST00000671568.1:ENST00000671036.1:ENST00000669798.1:ENST00000655753.1:ENST00000655856.1:ENST00000658398.1:ENST00000661518.1:ENST00000661279.1:ENST00000655495.1:ENST00000663041.1:ENST00000659827.1:ENST00000667716.1:ENST00000668416.1:ENST00000658133.1:ENST00000342990.4:ENST00000660054.1:ENST00000671370.1	lncRNA	lncRNA	lncRNA	lncRNA	7	90	2	1.88141	2.108275	2.33514	0.0161424	0.00690847	0.109464	0.0718189
chr1	112935323	112935423	523935	0	-	0.47	(0.44,0.476]	chr1	61691	1	SS5_PROX	SS5_PROX:INTRON	SLC16A1	ENSG00000155380.13	ENST00000679803.1:ENST00000369626.8:ENST00000443580.6:ENST00000538576.5:ENST00000429288.2:ENST00000458229.6:ENST00000679846.1:ENST00000478835.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	85	2	1.7899	2.108165	2.42643	0.0158205	0.0033369	0.101453	0.0528877
chr4	82372529	82372618	2177525	0	-	0.438202	(0.408,0.44]	chr4	214152	6	INTRON	INTRON	HNRNPD	ENSG00000138668.19	ENST00000313899.12:ENST00000353341.8:ENST00000352301.8:ENST00000513584.1:ENST00000509263.5:ENST00000507010.5:ENST00000515432.1:ENST00000503822.1:ENST00000509107.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	14	148	2	1.67278	2.108135	2.54349	0.0116704	2.29121e-4	0.0891208	0.0133403
chr16	21466591	21466691	6461008	0	-	0.26	[0,0.28]	chr16	623310	1	SS5_PROX	SS5_PROX:INTRON	SMG1P3	ENSG00000180747.15	ENST00000520823.6:ENST00000522480.5:ENST00000522841.6	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	6	76	2	1.43909	2.108125	2.77716	0.0526509	0.022039	0.178401	0.115395
chr3	194414435	194414535	1890440	0	-	0.32	(0.28,0.32]	chr3	189101	7	EXON_MRNA	EXON_MRNA:INTRON	ATP13A3	ENSG00000133657.17	ENST00000687055.1:ENST00000645538.1:ENST00000645319.2:ENST00000690810.1:ENST00000429136.7:ENST00000645621.1:ENST00000691700.1:ENST00000461660.2:ENST00000685123.1:ENST00000642744.2:ENST00000439040.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	90	2	1.84658	2.108105	2.36963	0.0157022	0.0128582	0.101453	0.0990564
chr1	51754921	51755020	100788	0	+	0.434343	(0.408,0.44]	chr1	13319	18	INTRON	INTRON	OSBPL9	ENSG00000117859.19	ENST00000371714.5:ENST00000428468.6:ENST00000447887.5:ENST00000495776.5:ENST00000435274.6:ENST00000453295.5:ENST00000489990.5:ENST00000484890.5:ENST00000532975.5:ENST00000534040.5:ENST00000527631.5:ENST00000531828.5:ENST00000361556.9:ENST00000473207.6:ENST00000533884.5:ENST00000481937.5:ENST00000526917.5:ENST00000462759.5:ENST00000486942.5:ENST00000524620.1:ENST00000528603.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	108	2	1.98453	2.1080699999999997	2.23161	0.00766144	0.00206564	0.075364	0.04217
chr16	21514929	21515029	6461506	0	-	0.5	(0.476,0.515]	chr16	623383	84	INTRON	INTRON	SMG1P3	ENSG00000180747.15	ENST00000522841.6:ENST00000437413.2:ENST00000435197.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	6	64	2	1.48023	2.107935	2.73564	0.0559072	0.00333144	0.18407	0.0512081
chr5	154758581	154758681	2527030	0	+	0.41	(0.408,0.44]	chr5	241610	7	INTRON	INTRON	LARP1	ENSG00000155506.19	ENST00000687700.1:ENST00000336314.9:ENST00000690816.1:ENST00000518297.6:ENST00000517616.5:ENST00000518892.1:ENST00000521577.1:ENST00000519931.5:ENST00000524248.5:ENST00000685946.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	122	2	1.45618	2.107815	2.75945	0.0263572	2.60318e-4	0.122319	0.014326
chr22	41284500	41284600	7591137	0	-	0.45	(0.44,0.476]	chr22	777374	2	SS5_PROX	SS5_PROX:INTRON	RANGAP1	ENSG00000100401.20	ENST00000356244.8:ENST00000405486.5:ENST00000422838.1	protein_coding	protein_coding	protein_coding	protein_coding	13	118	2	1.32793	2.107805	2.88768	0.0279938	5.10179e-4	0.137011	0.020816
chr8	27520000	27520096	3721478	0	+	0.447917	(0.44,0.476]	chr8	345862	16	INTRON	INTRON	EPHX2	ENSG00000120915.14	ENST00000517536.5:ENST00000520623.5:ENST00000521400.6:ENST00000521780.5:ENST00000380476.7:ENST00000518379.5:ENST00000521684.1:ENST00000523326.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	34	2	2.00609	2.10779	2.20949	0.0672585	0.0360127	0.183051	0.152355
chr3	197121801	197121900	1901722	0	-	0.272727	[0,0.28]	chr3	190571	19	INTRON	INTRON	DLG1	ENSG00000075711.21	ENST00000667157.1:ENST00000346964.6:ENST00000656428.1:ENST00000663148.1:ENST00000655488.1:ENST00000357674.9:ENST00000671185.1:ENST00000658701.1:ENST00000667104.1:ENST00000661336.1:ENST00000669565.1:ENST00000670455.1:ENST00000656087.1:ENST00000670366.1:ENST00000653583.1:ENST00000653795.1:ENST00000671246.1:ENST00000661453.1:ENST00000665728.1:ENST00000664564.1:ENST00000653331.1:ENST00000660432.1:ENST00000660898.1:ENST00000657381.1:ENST00000659221.1:ENST00000654737.1:ENST00000669332.1:ENST00000659716.1:ENST00000660553.1:ENST00000664991.1:ENST00000419354.5:ENST00000661440.1:ENST00000667971.1:ENST00000670935.1:ENST00000668578.1:ENST00000666007.1:ENST00000661229.1:ENST00000660237.1:ENST00000657098.1:ENST00000661013.1:ENST00000436682.6:ENST00000452595.5:ENST00000662727.1:ENST00000422288.6:ENST00000448528.6:ENST00000443183.5:ENST00000656944.1:ENST00000392382.6:ENST00000450955.5:ENST00000658155.1:ENST00000669714.1:ENST00000654733.1:ENST00000469073.2:ENST00000419227.5:ENST00000392381.7:ENST00000471733.5:ENST00000419553.6:ENST00000447466.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	59	2	1.66929	2.107765	2.54624	0.0537506	0.0388449	0.180803	0.143072
chr6	161060628	161060727	3025184	0	+	0.50505	(0.476,0.515]	chr6	282325	103	INTRON	INTRON	MAP3K4	ENSG00000085511.20	ENST00000366919.6:ENST00000392142.9:ENST00000542952.5:ENST00000366920.6:ENST00000348824.11:ENST00000544041.5:ENST00000490904.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	15	128	2	1.30085	2.1077000000000004	2.91455	0.0251273	4.32026e-4	0.133404	0.0190829
chr10	18539599	18539699	4569582	0	-	0.47	(0.44,0.476]	chr10	421452	3	SS3_PROX	SS3_PROX:INTRON	ENSG00000240291	ENSG00000240291.1	ENST00000425669.1	lncRNA	lncRNA	lncRNA	lncRNA	4	46	2	2.0776	2.1076949999999997	2.13779	0.0292951	0.0264596	0.141862	0.122506
chr9	131144949	131145047	4215822	0	+	0.234694	[0,0.28]	chr9	386559	3	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	NUP214	ENSG00000126883.19	ENST00000695497.1:ENST00000695498.1:ENST00000695496.1:ENST00000695495.1:ENST00000695494.1:ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000525561.2:ENST00000651022.1:ENST00000530863.1:ENST00000525980.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	29	444	2	2.03054	2.107685	2.18483	0.00150512	8.74948e-4	0.0352794	0.0269156
chrX	101392485	101392583	7694861	0	+	0.367347	(0.35,0.378]	chrX	787455	5	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	RPL36A	ENSG00000241343.10	ENST00000427805.6:ENST00000614077.4:ENST00000392994.7:ENST00000553110.8:ENST00000465340.5:ENST00000372849.8:ENST00000465744.5:ENST00000471855.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	54	2	1.49028	2.10763	2.72498	0.0590834	0.0168499	0.168067	0.11068
chr20	47316761	47316861	7349111	0	-	0.35	(0.32,0.35]	chr20	749342	62	INTRON	INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000468376.2:ENST00000435836.5:ENST00000446894.5:ENST00000441977.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	67	2	1.61669	2.10762	2.59855	0.0578816	0.00682041	0.188651	0.0712518
chr11	114443064	114443161	4869000	0	+	0.360825	(0.35,0.378]	chr11	454399	13	INTRON	INTRON	ENSG00000255663:REXO2	ENSG00000255663.1:ENSG00000076043.11	ENST00000544347.1:ENST00000544010.5:ENST00000265881.10:ENST00000539754.5:ENST00000539275.5:ENST00000539333.5:ENST00000541703.5:ENST00000543131.5:ENST00000538198.5:ENST00000539119.5:ENST00000542186.1:ENST00000544827.5:ENST00000546316.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	95	2	1.8773	2.10761	2.33792	0.0184031	0.0024225	0.108834	0.0454587
chr19	45720975	45721075	7193088	0	-	0.36	(0.35,0.378]	chr19	728464	37	INTRON	INTRON	FBXO46	ENSG00000177051.6	ENST00000317683.4:ENST00000586899.1	protein_coding	protein_coding	protein_coding	protein_coding	3	38	2	1.81767	2.107565	2.39746	0.0640429	0.041314	0.177882	0.161534
chr1	147268193	147268281	212487	0	+	0.397727	(0.378,0.408]	chr1	23537	3	INTRON	INTRON	CHD1L	ENSG00000131778.20	ENST00000652587.1:ENST00000652616.1:ENST00000652494.1:ENST00000651207.1:ENST00000650721.1:ENST00000651226.1:ENST00000652161.1:ENST00000651510.1:ENST00000361293.10:ENST00000652278.1:ENST00000369259.4:ENST00000467213.5:ENST00000369258.8:ENST00000622533.4:ENST00000651410.1:ENST00000652486.1:ENST00000652346.1:ENST00000651407.1:ENST00000650828.1:ENST00000651070.1:ENST00000650714.1:ENST00000651420.1:ENST00000652357.1:ENST00000488864.5:ENST00000652188.1:ENST00000651820.1:ENST00000651231.1:ENST00000651206.1:ENST00000431239.6:ENST00000650813.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	17	179	2	1.77053	2.107495	2.44446	0.00356402	6.74771e-4	0.0548435	0.0237705
chr21	9330534	9330632	7367436	0	+	0.428571	(0.408,0.44]	chr21	751920	29	INTRON	INTRON	ENSG00000278932	ENSG00000278932.5	ENST00000622961.3:ENST00000686553.1:ENST00000691955.1:ENST00000625153.3:ENST00000692626.1:ENST00000685951.1:ENST00000686510.1:ENST00000692884.1	lncRNA	lncRNA	lncRNA	lncRNA	4	46	2	1.88062	2.107465	2.33431	0.0534548	0.0129219	0.162935	0.0990564
chrX	71536557	71536657	7679978	0	+	0.35	(0.32,0.35]	chrX	786385	3	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	OGT	ENSG00000147162.14	ENST00000373719.8:ENST00000488174.5:ENST00000373701.7:ENST00000472270.1:ENST00000498566.3:ENST00000444774.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	11	111	2	1.55189	2.107455	2.66302	0.0146077	0.00542632	0.106092	0.0645052
chr22	17639386	17639485	7475026	0	+	0.414141	(0.408,0.44]	chr22	762152	1	INTRON	INTRON	BCL2L13	ENSG00000099968.18	ENST00000399781.5:ENST00000399782.5:ENST00000337612.9:ENST00000418951.6:ENST00000538149.5:ENST00000543133.5:ENST00000611738.4:ENST00000616863.4:ENST00000618481.4:ENST00000498133.5:ENST00000317582.10:ENST00000464649.1:ENST00000493680.5:ENST00000355028.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	48	2	1.85305	2.10745	2.36185	0.0543543	0.0133164	0.182243	0.094512
chr9	97659797	97659890	4172882	0	+	0.430108	(0.408,0.44]	chr9	380212	7	INTRON	INTRON	NCBP1	ENSG00000136937.13	ENST00000375147.8	protein_coding	protein_coding	protein_coding	protein_coding	4	48	2	1.85305	2.10745	2.36185	0.0543543	0.0133164	0.182243	0.094512
chr19	47132002	47132099	7083879	0	+	0.546392	(0.515,0.57]	chr19	708735	5	INTRON	INTRON	SAE1	ENSG00000142230.13	ENST00000594144.5:ENST00000594526.5:ENST00000597808.5:ENST00000413379.7:ENST00000600706.5:ENST00000270225.12:ENST00000598840.5:ENST00000414294.6:ENST00000600753.1:ENST00000660039.1:ENST00000664120.1:ENST00000596995.1:ENST00000392776.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	54	2	1.94248	2.10743	2.27238	0.0161808	0.0115668	0.101453	0.0962115
chr8	6713723	6713822	3695055	0	+	0.454545	(0.44,0.476]	chr8	342828	38	INTRON	INTRON	AGPAT5	ENSG00000155189.12	ENST00000285518.11:ENST00000523234.5:ENST00000518327.1:ENST00000523586.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	13	135	2	1.78888	2.10743	2.42598	0.00575567	0.00106818	0.068224	0.0300066
chr13	50060622	50060722	5594375	0	-	0.43	(0.408,0.44]	chr13	534699	106	INTRON	INTRON	DLEU2	ENSG00000231607.14	ENST00000621282.4:ENST00000688690.1:ENST00000668305.1:ENST00000425586.5:ENST00000686946.1:ENST00000458725.7:ENST00000692504.1:ENST00000443587.6:ENST00000686700.1:ENST00000691340.1:ENST00000433070.7:ENST00000659339.1:ENST00000662092.1:ENST00000666359.2:ENST00000449579.2:ENST00000421758.6:ENST00000690259.1	lncRNA	lncRNA	lncRNA	lncRNA	4	46	2	2.00228	2.10733	2.21238	0.0389732	0.0193525	0.143072	0.119831
chr22	19416851	19416950	7554276	0	-	0.414141	(0.408,0.44]	chr22	772317	57	INTRON	INTRON	HIRA:C22orf39	ENSG00000100084.14:ENSG00000242259.9	ENST00000263208.5:ENST00000340170.8:ENST00000509549.5:ENST00000464189.5:ENST00000452818.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	46	2	2.00228	2.10733	2.21238	0.0389732	0.0193525	0.143072	0.119831
chr4	17627060	17627159	1926978	0	+	0.434343	(0.408,0.44]	chr4	193701	15	UTR3	UTR3:EXON_MRNA:INTRON	MED28	ENSG00000118579.13	ENST00000237380.12:ENST00000503945.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	46	2	2.00228	2.10733	2.21238	0.0389732	0.0193525	0.143072	0.119831
chr16	14914772	14914870	6304697	0	+	0.397959	(0.378,0.408]	chr16	603076	25	INTRON	INTRON	PKD1P3	ENSG00000183458.14	ENST00000534164.6	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	7	81	2	1.76	2.107325	2.45465	0.023484	0.00381582	0.128531	0.0542786
chr15	63780652	63780752	6200372	0	-	0.48	(0.476,0.515]	chr15	591444	1	SS3_PROX	SS3_PROX:INTRON	HERC1	ENSG00000103657.14	ENST00000443617.7:ENST00000561400.1:ENST00000559886.1:ENST00000558532.1:ENST00000560462.1:ENST00000560316.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	55	2	2.05154	2.1073000000000004	2.16306	0.0336015	0.00973468	0.134145	0.0877284
chr3	177129972	177130071	1871769	0	-	0.50505	(0.476,0.515]	chr3	187412	40	INTRON	INTRON	TBL1XR1	ENSG00000177565.18	ENST00000457928.7:ENST00000430069.5:ENST00000673974.1:ENST00000352800.10:ENST00000422442.6:ENST00000428970.5:ENST00000424913.5:ENST00000437738.5:ENST00000431421.5:ENST00000635794.1:ENST00000630796.2:ENST00000450267.5:ENST00000630833.2:ENST00000431674.5:ENST00000422066.5:ENST00000443315.5:ENST00000627825.2:ENST00000427349.5:ENST00000413084.5:ENST00000637137.1:ENST00000491623.2:ENST00000637544.1:ENST00000636478.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	55	2	2.05154	2.1073000000000004	2.16306	0.0336015	0.00973468	0.134145	0.0877284
chr1	19225342	19225440	386945	0	-	0.540816	(0.515,0.57]	chr1	46163	14	INTRON	INTRON	EMC1	ENSG00000127463.16	ENST00000477853.6:ENST00000688219.1:ENST00000690732.1:ENST00000690451.1:ENST00000688667.1:ENST00000685099.1:ENST00000685594.1:ENST00000690823.1:ENST00000692207.1:ENST00000688332.1:ENST00000693007.1:ENST00000688918.1:ENST00000691945.1:ENST00000375199.7:ENST00000375208.7:ENST00000486405.2:ENST00000494770.7:ENST00000692400.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	54	2	1.62814	2.10719	2.58624	0.035203	0.00526399	0.150193	0.0633874
chr3	12834862	12834957	1617441	0	-	0.484211	(0.476,0.515]	chr3	167008	5	UTR3	UTR3:EXON_MRNA	RPL32	ENSG00000144713.13	ENST00000429711.7:ENST00000396957.5	protein_coding	protein_coding	protein_coding	protein_coding	10	109	2	2.01628	2.1071850000000003	2.19809	0.020317	0.00249305	0.121522	0.0446195
chrX	55022564	55022663	7823219	0	-	0.373737	(0.35,0.378]	chrX	798451	9	INTRON	INTRON	ALAS2	ENSG00000158578.21	ENST00000396198.7:ENST00000650242.1:ENST00000335854.8:ENST00000463868.5:ENST00000493869.2:ENST00000477869.6:ENST00000455688.2:ENST00000644983.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	84	2	1.72813	2.10718	2.48623	0.0132675	0.00938784	0.100167	0.0817766
chr16	16574691	16574791	6311609	0	+	0.48	(0.476,0.515]	chr16	604098	747	INTRON	INTRON	ENSG00000260126	ENSG00000260126.2	ENST00000567465.2	lncRNA	lncRNA	lncRNA	lncRNA	15	132	2	1.34525	2.107165	2.86908	0.0240327	4.03011e-4	0.119804	0.0180338
chr22	21595656	21595756	7481984	0	+	0.28	[0,0.28]	chr22	763238	23	INTRON	INTRON	UBE2L3	ENSG00000185651.16	ENST00000458578.6:ENST00000545681.2:ENST00000696046.1:ENST00000342192.9:ENST00000496722.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	103	2	1.81439	2.10715	2.39991	0.0163416	0.0160379	0.109464	0.101571
chr6	110880714	110880814	2939003	0	+	0.55	(0.515,0.57]	chr6	276765	47	INTRON	INTRON	AMD1	ENSG00000123505.19	ENST00000451850.6:ENST00000675380.1:ENST00000368882.8:ENST00000672937.2:ENST00000368885.8:ENST00000368877.9:ENST00000368876.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	60	2	1.43219	2.107135	2.78208	0.0483322	0.00209264	0.153415	0.0424943
chr5	54114309	54114409	2618952	0	-	0.59	(0.57,1]	chr5	248848	5	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2:ENST00000505630.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	33	2	1.55956	2.10713	2.6547	0.0448639	0.00346848	0.149888	0.0539802
chr1	40379393	40379492	81500	0	+	0.383838	(0.378,0.408]	chr1	10553	43	INTRON	INTRON	SMAP2	ENSG00000084070.12	ENST00000435168.6:ENST00000372718.8:ENST00000372708.5	protein_coding	protein_coding	protein_coding	protein_coding	7	73	2	1.54765	2.10704	2.66643	0.0334147	0.00470023	0.146709	0.0600108
chr14	20323516	20323611	5833057	0	-	0.431579	(0.408,0.44]	chr14	553954	3	INTRON	INTRON	CCNB1IP1	ENSG00000100814.18	ENST00000353689.8:ENST00000437553.6:ENST00000398160.6:ENST00000358932.9:ENST00000398169.7:ENST00000398163.6:ENST00000556854.5:ENST00000557665.5:ENST00000556563.5:ENST00000553291.5:ENST00000553516.5:ENST00000555348.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	56	2	1.87977	2.10704	2.33431	0.0282738	0.0129219	0.125825	0.0990564
chr15	67178656	67178755	6052991	0	+	0.313131	(0.28,0.32]	chr15	576318	37	INTRON	INTRON	SMAD3	ENSG00000166949.17	ENST00000327367.9:ENST00000679624.1:ENST00000540846.6:ENST00000558894.5:ENST00000439724.7:ENST00000681239.1:ENST00000537194.6:ENST00000558827.1:ENST00000558428.5:ENST00000560402.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	43	2	2.0243	2.107025	2.18975	0.0776042	0.0364967	0.196285	0.153759
chr11	63975194	63975294	4801823	0	+	0.63	(0.57,1]	chr11	445185	4	SS5_PROX	SS5_PROX:INTRON	COX8A	ENSG00000176340.4	ENST00000314133.4	protein_coding	protein_coding	protein_coding	protein_coding	5	29	2	2.07956	2.107005	2.13445	0.0241482	0.013114	0.12011	0.0998629
chr16	8097022	8097122	6441479	0	-	0.23	[0,0.28]	chr16	620351	894	INTRON	INTRON	ENSG00000260289	ENSG00000260289.2	ENST00000670665.1:ENST00000654046.1:ENST00000567103.2	lncRNA	lncRNA	lncRNA	lncRNA	9	123	2	1.25386	2.107005	2.96015	0.0725994	0.00161799	0.188491	0.0369252
chr3	14951708	14951807	1371819	0	+	0.454545	(0.44,0.476]	chr3	144594	26	INTRON	INTRON	NR2C2	ENSG00000177463.16	ENST00000425241.6:ENST00000413118.5:ENST00000435454.5:ENST00000323373.10:ENST00000475707.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	55	2	1.71574	2.106985	2.49823	0.045256	0.00718224	0.149888	0.0756118
chr14	101817326	101817426	5819057	0	+	0.34	(0.32,0.35]	chr14	551841	69	INTRON	INTRON	PPP2R5C	ENSG00000078304.20	ENST00000694906.1:ENST00000422945.6:ENST00000554442.5:ENST00000556068.5:ENST00000328724.9:ENST00000554504.1:ENST00000553890.1:ENST00000350249.7:ENST00000557621.5:ENST00000556946.1:ENST00000556307.5:ENST00000553730.5:ENST00000557714.1:ENST00000334743.9:ENST00000445439.7:ENST00000557095.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	50	2	1.64769	2.106935	2.56618	0.0578603	0.0274185	0.167723	0.136498
chr18	174207	174307	6854984	0	+	0.31	(0.28,0.32]	chr18	679508	70	INTRON	INTRON	USP14	ENSG00000101557.15	ENST00000582707.5:ENST00000400266.7:ENST00000261601.8:ENST00000578942.5:ENST00000383589.6:ENST00000583119.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	101	2	1.50551	2.10691	2.70831	0.0379201	0.00378444	0.141362	0.0562562
chr1	100405922	100406022	173164	0	+	0.44	(0.408,0.44]	chr1	18824	147	INTRON	INTRON	CDC14A	ENSG00000079335.20	ENST00000646665.1:ENST00000644844.1:ENST00000635056.2:ENST00000647005.1:ENST00000647203.1:ENST00000644676.1:ENST00000361544.11:ENST00000370124.8:ENST00000336454.5:ENST00000644813.1:ENST00000455467.6:ENST00000646563.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	34	2	1.85305	2.10689	2.36073	0.0543543	0.0481658	0.182243	0.153019
chr5	149504845	149504944	2750601	0	-	0.414141	(0.408,0.44]	chr5	259007	1	UTR3	UTR3:EXON_MRNA:INTRON	CSNK1A1	ENSG00000113712.19	ENST00000261798.10:ENST00000377843.8:ENST00000657001.1:ENST00000515768.6:ENST00000606719.6:ENST00000657462.1:ENST00000661952.1:ENST00000504676.5:ENST00000515435.5:ENST00000662268.1:ENST00000657706.1:ENST00000606826.5:ENST00000503350.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	34	2	1.85305	2.10689	2.36073	0.0543543	0.0481658	0.182243	0.153019
chr8	90347142	90347242	3793565	0	+	0.41	(0.408,0.44]	chr8	351786	1000	INTRON	INTRON	LINC00534	ENSG00000253394.7	ENST00000662145.1:ENST00000655523.1:ENST00000517400.6:ENST00000658299.1:ENST00000663329.1:ENST00000658342.1:ENST00000523283.6:ENST00000655219.1:ENST00000662692.1:ENST00000667296.1:ENST00000667565.1:ENST00000523406.2:ENST00000659030.1:ENST00000653734.1:ENST00000654785.1:ENST00000524361.5:ENST00000668745.1:ENST00000666641.2:ENST00000661519.1:ENST00000671657.1:ENST00000655123.1:ENST00000663098.1:ENST00000670903.1:ENST00000654946.1	lncRNA	lncRNA	lncRNA	lncRNA	3	34	2	1.85305	2.10689	2.36073	0.0543543	0.0481658	0.182243	0.153019
chrX	124060039	124060137	7717755	0	+	0.428571	(0.408,0.44]	chrX	789560	17	INTRON	INTRON	STAG2	ENSG00000101972.20	ENST00000218089.13:ENST00000455404.5:ENST00000483575.5:ENST00000687810.1:ENST00000687071.1:ENST00000469481.1:ENST00000371160.5:ENST00000687852.1:ENST00000371145.8:ENST00000692982.1:ENST00000371157.7:ENST00000691035.1:ENST00000686802.1:ENST00000691383.1:ENST00000686127.1:ENST00000371144.7:ENST00000466748.5:ENST00000471107.1:ENST00000693144.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	34	2	1.85305	2.10689	2.36073	0.0543543	0.0481658	0.182243	0.153019
chr12	110294505	110294604	5226232	0	+	0.585859	(0.57,1]	chr12	495240	20	INTRON	INTRON	ATP2A2	ENSG00000174437.18	ENST00000552636.2:ENST00000308664.10:ENST00000539276.7:ENST00000377685.9:ENST00000548169.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	22	2	1.67986	2.106845	2.53383	0.0496395	0.02547	0.174685	0.12011
chr17	48616086	48616185	6791427	0	-	0.636364	(0.57,1]	chr17	670052	52	INTRON	INTRON	HOXB7	ENSG00000260027.5	ENST00000567101.2	protein_coding	processed_transcript	protein_coding	processed_transcript	4	22	2	1.67986	2.106845	2.53383	0.0496395	0.02547	0.174685	0.12011
chr19	8000956	8001055	7130764	0	-	0.575758	(0.57,1]	chr19	718387	88	INTRON	INTRON	ELAVL1	ENSG00000066044.15	ENST00000407627.7:ENST00000596459.5:ENST00000593807.1	protein_coding	protein_coding	protein_coding	protein_coding	4	22	2	1.67986	2.106845	2.53383	0.0496395	0.02547	0.174685	0.12011
chr15	63733837	63733934	6199884	0	-	0.43299	(0.408,0.44]	chr15	591364	3	INTRON	INTRON	HERC1	ENSG00000103657.14	ENST00000443617.7:ENST00000561400.1	protein_coding	protein_coding	protein_coding	protein_coding	6	66	2	1.87932	2.106815	2.33431	0.0172104	0.0129219	0.104099	0.0990564
chr4	70927732	70927832	1970759	0	+	0.48	(0.476,0.515]	chr4	197571	248	INTRON	INTRON	MOB1B	ENSG00000173542.9	ENST00000502869.5:ENST00000509041.5:ENST00000309395.7:ENST00000396051.2:ENST00000511449.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	56	2	1.80755	2.106815	2.40608	0.0425709	0.0131326	0.148082	0.0999551
chr5	32421699	32421799	2599098	0	-	0.26	[0,0.28]	chr5	246966	12	INTRON	INTRON	ZFR	ENSG00000056097.16	ENST00000265069.13:ENST00000505366.1:ENST00000505204.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	83	2	1.812	2.10681	2.40162	0.0729149	0.00511828	0.189235	0.064713
chr11	12977551	12977651	4915948	0	-	0.34	(0.32,0.35]	chr11	460662	120	INTRON	INTRON	LINC00958	ENSG00000251381.8	ENST00000658243.1:ENST00000527945.2	lncRNA	lncRNA	lncRNA	lncRNA	7	89	2	1.70947	2.10679	2.50411	0.0328375	0.00267989	0.133816	0.0478767
chr16	22442231	22442331	6321989	0	+	0.42	(0.408,0.44]	chr16	605299	41	INTRON	INTRON	SMG1P1	ENSG00000237296.10	ENST00000446662.5:ENST00000381231.5:ENST00000309865.11:ENST00000691795.1:ENST00000308347.10:ENST00000687936.1:ENST00000691423.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	8	88	2	1.73753	2.10679	2.47605	0.0275537	0.00116417	0.123904	0.0314524
chr1	32663535	32663634	65955	0	+	0.464646	(0.44,0.476]	chr1	8429	8	INTRON	INTRON	RBBP4	ENSG00000162521.19	ENST00000414241.7:ENST00000527118.5:ENST00000373493.10:ENST00000401893.7:ENST00000524393.5:ENST00000492348.6:ENST00000526193.5:ENST00000373485.5:ENST00000477563.6:ENST00000458695.6:ENST00000445722.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	97	2	1.90375	2.1067850000000004	2.30982	0.0156406	0.00140739	0.101393	0.0344267
chr1	233627088	233627187	338664	0	+	0.363636	(0.35,0.378]	chr1	39410	25	INTRON	INTRON	KCNK1	ENSG00000135750.15	ENST00000366621.8	protein_coding	protein_coding	protein_coding	protein_coding	4	50	2	1.81767	2.10675	2.39583	0.0640429	0.0107976	0.177882	0.0920575
chr3	168085051	168085151	1854831	0	-	0.37	(0.35,0.378]	chr3	186419	363	INTRON	INTRON	GOLIM4	ENSG00000173905.9	ENST00000470487.6:ENST00000309027.4	protein_coding	protein_coding	protein_coding	protein_coding	4	50	2	1.81767	2.10675	2.39583	0.0640429	0.0107976	0.177882	0.0920575
chr16	21466199	21466297	6461004	0	-	0.326531	(0.32,0.35]	chr16	623309	10	INTRON	INTRON	SMG1P3	ENSG00000180747.15	ENST00000520823.6:ENST00000522480.5:ENST00000522841.6	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	13	159	2	1.47087	2.106735	2.7426	0.0282825	1.73451e-4	0.125858	0.0114162
chr4	55629602	55629702	2150631	0	-	0.34	(0.32,0.35]	chr4	211635	129	INTRON	INTRON	NMU	ENSG00000109255.11	ENST00000511469.5:ENST00000264218.7:ENST00000505262.5:ENST00000507338.1:ENST00000515325.5:ENST00000509371.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	74	2	1.98909	2.10669	2.22429	0.0226421	0.0108865	0.117557	0.0923273
chr4	771491	771591	2093313	0	-	0.54	(0.515,0.57]	chr4	206823	35	INTRON	INTRON	ENSG00000249592	ENSG00000249592.7	ENST00000660016.1:ENST00000665579.1:ENST00000503571.5:ENST00000652800.1:ENST00000507446.1	lncRNA	lncRNA	lncRNA	lncRNA	22	175	2	1.48161	2.106685	2.73176	0.00710863	8.08261e-5	0.0756118	0.00805538
chr17	46554355	46554455	6786477	0	-	0.43	(0.408,0.44]	chr17	669357	17	UTR3	UTR3:EXON_MRNA:INTRON	ARL17A	ENSG00000185829.18	ENST00000445552.6:ENST00000622488.6:ENST00000329240.10:ENST00000573185.5:ENST00000570550.5:ENST00000336125.6	protein_coding	protein_coding	protein_coding	protein_coding	11	118	2	1.70815	2.106675	2.5052	0.0159677	5.05909e-4	0.101453	0.0202328
chr1	225984801	225984901	646308	0	-	0.3	(0.28,0.32]	chr1	76574	22	UTR3	UTR3:EXON_MRNA	SDE2	ENSG00000143751.10	ENST00000272091.8	protein_coding	protein_coding	protein_coding	protein_coding	35	471	2	1.91442	2.106655	2.29889	0.00170094	2.14312e-4	0.0373155	0.0128514
chr18	9598933	9599032	6946162	0	-	0.535354	(0.515,0.57]	chr18	687037	34	INTRON	INTRON	PPP4R1	ENSG00000154845.16	ENST00000400555.7:ENST00000400556.8:ENST00000285124.12:ENST00000578875.5:ENST00000578178.5:ENST00000583903.5:ENST00000579638.5:ENST00000584074.5:ENST00000579415.5:ENST00000581250.5:ENST00000580745.5:ENST00000582933.5:ENST00000580182.5:ENST00000582240.5:ENST00000581835.1:ENST00000583092.1:ENST00000577779.1:ENST00000580283.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	74	2	2.09379	2.106625	2.11946	0.00680216	0.00559899	0.071184	0.0678837
chr11	9228381	9228481	4908702	0	-	0.44	(0.408,0.44]	chr11	460107	204	INTRON	INTRON	DENND5A	ENSG00000184014.9	ENST00000328194.8:ENST00000681203.1:ENST00000530780.2:ENST00000679999.1:ENST00000680470.1:ENST00000680554.1:ENST00000681425.1:ENST00000679568.1:ENST00000679446.1:ENST00000680294.1:ENST00000680742.1:ENST00000680885.1:ENST00000530044.5:ENST00000526707.5:ENST00000532696.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	35	2	1.81572	2.10661	2.3975	0.0626779	0.040266	0.175915	0.161534
chr7	74480133	74480233	3333918	0	+	0.42	(0.408,0.44]	chr7	310175	256	INTRON	INTRON	GTF2IRD1	ENSG00000006704.11	ENST00000265755.7:ENST00000424337.7:ENST00000455841.6	protein_coding	protein_coding	protein_coding	protein_coding	3	35	2	1.81572	2.10661	2.3975	0.0626779	0.040266	0.175915	0.161534
chr7	128740030	128740129	3408382	0	+	0.323232	(0.32,0.35]	chr7	318422	2	INTRON	INTRON	CALU	ENSG00000128595.17	ENST00000535011.6:ENST00000542996.6:ENST00000249364.9:ENST00000449187.6:ENST00000479257.5	protein_coding	protein_coding	protein_coding	protein_coding	14	168	2	1.55627	2.106595	2.65692	0.0182332	2.79258e-4	0.10787	0.0148832
chr3	50016611	50016711	1423726	0	+	0.36	(0.35,0.378]	chr3	149994	167	INTRON	INTRON	RBM6	ENSG00000004534.15	ENST00000442092.5:ENST00000443081.5:ENST00000419610.5:ENST00000441115.5:ENST00000422955.5:ENST00000454079.5:ENST00000266022.9:ENST00000425608.5:ENST00000434592.5:ENST00000464013.5:ENST00000483350.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	50	2	2.04224	2.106515	2.17079	0.0363073	0.0225978	0.138959	0.124921
chr6	67888350	67888449	3135317	0	-	0.393939	(0.378,0.408]	chr6	292165	15	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	ENSG00000227706	ENSG00000227706.4	ENST00000657794.1:ENST00000652869.1:ENST00000662821.1:ENST00000663640.1:ENST00000660755.1:ENST00000660756.1:ENST00000667200.1:ENST00000654364.1:ENST00000670870.1:ENST00000666873.1:ENST00000658272.1:ENST00000661172.1:ENST00000412872.3	lncRNA	lncRNA	lncRNA	lncRNA	142	1545	2	1.95436	2.10651	2.25866	9.56605e-5	4.15769e-5	0.00822887	0.0054696
chr7	152219523	152219623	3679093	0	-	0.36	(0.35,0.378]	chr7	341526	107	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000683200.1:ENST00000682283.1:ENST00000473186.5:ENST00000679882.1:ENST00000680969.1:ENST00000681033.1:ENST00000682176.1:ENST00000679645.1:ENST00000684550.1:ENST00000489110.2:ENST00000681838.1:ENST00000683490.1:ENST00000684623.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	60	2	1.97646	2.106485	2.23651	0.020879	0.0193942	0.119831	0.111766
chr6	72721324	72721424	2898697	0	+	0.26	[0,0.28]	chr6	274190	429	INTRON	INTRON	KCNQ5	ENSG00000185760.18	ENST00000342056.6:ENST00000628967.2:ENST00000692515.1:ENST00000370398.6:ENST00000370392.5:ENST00000629977.2:ENST00000355194.9	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	68	2	2.00649	2.106455	2.20642	0.040391	0.0280845	0.161534	0.125065
chr2	131280778	131280877	866189	0	+	0.383838	(0.378,0.408]	chr2	97282	10	INTRON	INTRON	PLEKHB2:FAR2P4	ENSG00000115762.17:ENSG00000231431.7	ENST00000404460.5:ENST00000560285.5	protein_coding	protein_coding	protein_coding:transcribed_unprocessed_pseudogene	protein_coding:processed_transcript	6	69	2	2.02762	2.10637	2.18512	0.0181059	0.00902136	0.107247	0.0851259
chr2	182945337	182945436	1285071	0	-	0.414141	(0.408,0.44]	chr2	135307	28	INTRON	INTRON	NCKAP1	ENSG00000061676.15	ENST00000361354.9:ENST00000360982.2:ENST00000478449.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	120	2	1.76523	2.106365	2.4475	0.0174785	3.98022e-4	0.10482	0.0179298
chr20	62257683	62257779	7298378	0	+	0.46875	(0.44,0.476]	chr20	742399	11	INTRON	INTRON	OSBPL2	ENSG00000130703.17	ENST00000618509.4:ENST00000622332.4:ENST00000439951.6:ENST00000644535.1:ENST00000358053.3:ENST00000313733.9:ENST00000642957.1:ENST00000645520.1:ENST00000642932.1:ENST00000642516.1:ENST00000643174.1:ENST00000644775.1:ENST00000645442.1:ENST00000646968.1:ENST00000646834.1:ENST00000643412.1:ENST00000645594.1:ENST00000645426.1:ENST00000644702.1:ENST00000644189.1:ENST00000643981.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	55	2	2.08277	2.106345	2.12992	0.0309998	0.010975	0.13151	0.092635
chr2	107740045	107740145	1205950	0	-	0.37	(0.35,0.378]	chr2	128532	224	INTRON	INTRON	LINC01885:ENSG00000286769	ENSG00000237880.2:ENSG00000286769.1	ENST00000654481.1:ENST00000669817.1	lncRNA	lncRNA	lncRNA	lncRNA	4	46	2	1.56287	2.106335	2.6498	0.0697648	0.0210137	0.184298	0.122348
chr7	23467171	23467271	3503634	0	-	0.36	(0.35,0.378]	chr7	326910	360	INTRON	INTRON	IGF2BP3	ENSG00000136231.14	ENST00000258729.8:ENST00000421467.6:ENST00000468263.5:ENST00000491719.5:ENST00000476938.5:ENST00000468005.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	46	2	1.56287	2.106335	2.6498	0.0697648	0.0210137	0.184298	0.122348
chr6	53292749	53292845	3107623	0	-	0.427083	(0.408,0.44]	chr6	291036	4	INTRON	INTRON	ELOVL5	ENSG00000012660.14	ENST00000370918.8:ENST00000542638.5:ENST00000304434.11:ENST00000485336.5:ENST00000465983.5:ENST00000486973.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	41	428	2	1.97009	2.1062849999999997	2.24248	6.55459e-4	6.37327e-5	0.023354	0.00660941
chr11	48007405	48007505	4789487	0	+	0.49	(0.476,0.515]	chr11	443265	260	INTRON	INTRON	PTPRJ	ENSG00000149177.14	ENST00000418331.7:ENST00000440289.6:ENST00000527952.1:ENST00000534219.5	protein_coding	protein_coding	protein_coding	protein_coding	3	35	2	1.92984	2.1062399999999997	2.28264	0.0534132	0.0466474	0.179876	0.151522
chr2	61456971	61457071	1130416	0	-	0.49	(0.476,0.515]	chr2	121499	358	INTRON	INTRON	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000453133.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	35	2	1.92984	2.1062399999999997	2.28264	0.0534132	0.0466474	0.179876	0.151522
chr1	51451035	51451135	453664	0	-	0.34	(0.32,0.35]	chr1	54395	25	INTRON	INTRON	EPS15	ENSG00000085832.17	ENST00000371733.8:ENST00000371730.6	protein_coding	protein_coding	protein_coding	protein_coding	6	74	2	1.50185	2.10619	2.71053	0.0589483	0.00346747	0.167915	0.0539802
chr7	157146030	157146130	3454010	0	+	0.22	[0,0.28]	chr7	322895	63	INTRON	INTRON	UBE3C	ENSG00000009335.18	ENST00000611269.4:ENST00000348165.10:ENST00000389103.4:ENST00000430750.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	68	2	1.56918	2.106135	2.64309	0.0481076	0.0308646	0.171525	0.13151
chr1	38994785	38994885	74433	0	+	0.47	(0.44,0.476]	chr1	9628	28	INTRON	INTRON	AKIRIN1	ENSG00000174574.16	ENST00000432648.8:ENST00000372984.8:ENST00000446189.6:ENST00000531822.1	protein_coding	protein_coding	protein_coding	protein_coding	5	55	2	1.87325	2.1061199999999998	2.33899	0.0265709	0.0142027	0.134088	0.0959987
chr19	11093297	11093395	7016851	0	+	0.510204	(0.476,0.515]	chr19	697422	20	INTRON	INTRON	LDLR	ENSG00000130164.14	ENST00000557933.5:ENST00000558518.6:ENST00000545707.5:ENST00000535915.5:ENST00000455727.6:ENST00000557958.1:ENST00000560502.5:ENST00000558013.5:ENST00000252444.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	20	216	2	1.85732	2.10604	2.35476	0.00270628	2.60618e-4	0.0480145	0.0148883
chr3	52691929	52692029	1429252	0	+	0.53	(0.515,0.57]	chr3	151006	3	SS5_PROX	SS5_PROX:INTRON	GNL3	ENSG00000163938.17	ENST00000394799.6:ENST00000418458.6:ENST00000496254.5:ENST00000484022.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	54	2	1.63907	2.106025	2.57298	0.0350277	0.00506495	0.137535	0.0646039
chr13	19717874	19717974	5552289	0	-	0.46	(0.44,0.476]	chr13	530696	79	INTRON	INTRON	PSPC1	ENSG00000121390.19	ENST00000471658.5:ENST00000492741.5:ENST00000635562.1:ENST00000338910.9:ENST00000619300.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	17	173	2	2.07523	2.10602	2.13681	0.00268027	6.71591e-4	0.0464781	0.0235155
chrX	74265010	74265109	7841328	0	-	0.373737	(0.35,0.378]	chrX	799728	26	INTRON	INTRON	FTX	ENSG00000230590.12	ENST00000603672.5:ENST00000430772.6:ENST00000602776.6:ENST00000638681.1:ENST00000652319.1:ENST00000661133.1:ENST00000652071.1:ENST00000602812.6:ENST00000651703.1:ENST00000653018.1:ENST00000658448.1:ENST00000662240.1:ENST00000652527.1:ENST00000651451.1:ENST00000657611.1:ENST00000660481.1:ENST00000659574.1:ENST00000661084.1:ENST00000662494.1:ENST00000670936.1:ENST00000602420.6:ENST00000658203.1:ENST00000638985.1:ENST00000691187.1:ENST00000603037.2:ENST00000687056.1:ENST00000654870.2:ENST00000652540.1:ENST00000652331.2:ENST00000652013.1:ENST00000657070.1:ENST00000665069.1:ENST00000651936.1:ENST00000652496.1:ENST00000653874.2:ENST00000661335.1:ENST00000664123.1:ENST00000658439.1:ENST00000666535.1:ENST00000652970.1:ENST00000423992.3:ENST00000665313.2:ENST00000651140.1:ENST00000660100.1:ENST00000693483.1:ENST00000656041.1:ENST00000657327.1:ENST00000664343.1:ENST00000656977.1:ENST00000671343.1:ENST00000659407.1:ENST00000671067.1:ENST00000660829.1:ENST00000671385.1	lncRNA	lncRNA	lncRNA	lncRNA	4	51	2	1.9755	2.106005	2.23651	0.0398617	0.020879	0.161534	0.111766
chr13	20021509	20021609	5453064	0	+	0.39	(0.378,0.408]	chr13	522478	15	INTRON	INTRON	ZMYM2	ENSG00000121741.17	ENST00000382874.6:ENST00000610343.5:ENST00000382871.3	protein_coding	protein_coding	protein_coding	protein_coding	7	79	2	1.64169	2.105955	2.57022	0.0377255	0.00179058	0.14078	0.0392749
chr1	246879799	246879899	681418	0	-	0.41	(0.408,0.44]	chr1	79929	21	INTRON	INTRON	AHCTF1	ENSG00000153207.16	ENST00000648844.2:ENST00000326225.3:ENST00000366508.5:ENST00000470300.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	118	2	2.03695	2.1058950000000003	2.17484	0.003472	0.00333392	0.0528877	0.052042
chr1	45658602	45658678	440305	0	-	0.447368	(0.44,0.476]	chr1	53349	2	SS5_PROX	SS5_PROX:INTRON	GPBP1L1	ENSG00000159592.11	ENST00000290795.7:ENST00000355105.8	protein_coding	protein_coding	protein_coding	protein_coding	5	48	2	1.75023	2.10579	2.46135	0.0374637	0.0240995	0.140008	0.129929
chr17	21027251	21027350	6743010	0	-	0.454545	(0.44,0.476]	chr17	662061	57	INTRON	INTRON	USP22	ENSG00000124422.12	ENST00000261497.9:ENST00000537526.6:ENST00000455117.6:ENST00000579645.5:ENST00000476111.5:ENST00000584538.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	48	2	1.75023	2.10579	2.46135	0.0374637	0.0240995	0.140008	0.129929
chr6	35377817	35377917	2852331	0	+	0.47	(0.44,0.476]	chr6	269491	303	INTRON	INTRON	PPARD	ENSG00000112033.14	ENST00000418635.6:ENST00000448077.6:ENST00000360694.8:ENST00000311565.4:ENST00000337400.6	protein_coding	protein_coding	protein_coding	protein_coding	8	84	2	1.85696	2.10571	2.35446	0.0107727	0.00536475	0.0920575	0.0642754
chr2	27403216	27403316	1087237	0	-	0.48	(0.476,0.515]	chr2	116461	157	INTRON	INTRON	PPM1G	ENSG00000115241.11	ENST00000472077.1:ENST00000344034.5:ENST00000484925.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	72	2	1.72573	2.10562	2.48551	0.0196488	0.00756632	0.109608	0.0773151
chr7	117044369	117044468	3386901	0	+	0.525253	(0.515,0.57]	chr7	317151	210	INTRON	INTRON	ST7:ST7-OT4	ENSG00000004866.22:ENSG00000214188.9	ENST00000393446.6:ENST00000265437.9:ENST00000393451.7:ENST00000438863.5:ENST00000393449.5:ENST00000443979.5:ENST00000323984.8:ENST00000417919.5:ENST00000446490.5:ENST00000471110.5:ENST00000422922.5:ENST00000432298.5:ENST00000449366.5:ENST00000487459.5:ENST00000393443.5:ENST00000467538.5:ENST00000434836.5:ENST00000465133.5:ENST00000477742.5:ENST00000462544.1:ENST00000393444.7:ENST00000393447.8	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:nonsense_mediated_decay:lncRNA:processed_transcript	4	35	2	1.60221	2.1056	2.60899	0.0581855	0.0232669	0.188704	0.118148
chr16	23922537	23922637	6324626	0	+	0.35	(0.32,0.35]	chr16	605701	288	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000498739.1	protein_coding	protein_coding	protein_coding	protein_coding	4	48	2	1.83315	2.1055450000000002	2.37794	0.0498601	0.0313348	0.156383	0.144381
chr20	50086447	50086546	7353686	0	-	0.343434	(0.32,0.35]	chr20	749863	18	INTRON	INTRON	UBE2V1	ENSG00000244687.13	ENST00000340309.7:ENST00000371677.7:ENST00000415862.6:ENST00000557021.5:ENST00000617119.4:ENST00000625172.3:ENST00000396059.7:ENST00000371674.8:ENST00000371657.9:ENST00000483534.5:ENST00000492371.6:ENST00000486653.5:ENST00000490555.1:ENST00000493090.5:ENST00000467839.5:ENST00000472923.5:ENST00000432266.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	48	2	1.83315	2.1055450000000002	2.37794	0.0498601	0.0313348	0.156383	0.144381
chr3	41209267	41209367	1403122	0	+	0.35	(0.32,0.35]	chr3	147417	85	INTRON	INTRON	CTNNB1	ENSG00000168036.18	ENST00000643541.1:ENST00000426215.5:ENST00000645210.1:ENST00000646381.1:ENST00000405570.6:ENST00000642248.1:ENST00000433400.6:ENST00000642992.1:ENST00000431914.6:ENST00000642836.1:ENST00000396185.8:ENST00000642986.1:ENST00000644678.1:ENST00000643031.1:ENST00000396183.7:ENST00000645982.1:ENST00000453024.6:ENST00000645900.1:ENST00000647264.1:ENST00000646174.1:ENST00000643992.1:ENST00000642886.1:ENST00000647390.1:ENST00000643052.1:ENST00000488914.2:ENST00000349496.11:ENST00000642426.1:ENST00000646074.1:ENST00000645276.1:ENST00000644138.1:ENST00000646116.1:ENST00000644873.1:ENST00000643865.1:ENST00000644867.1:ENST00000646725.1:ENST00000645493.1:ENST00000646369.1:ENST00000643977.1:ENST00000647413.1:ENST00000644524.1:ENST00000645305.1:ENST00000643297.1:ENST00000450969.6:ENST00000642315.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	48	2	1.83315	2.1055450000000002	2.37794	0.0498601	0.0313348	0.156383	0.144381
chr7	127361276	127361376	3633926	0	-	0.49	(0.476,0.515]	chr7	337748	16	EXON_MRNA	EXON_MRNA:INTRON	ZNF800:ENSG00000280347	ENSG00000048405.11:ENSG00000280347.1	ENST00000485577.1:ENST00000624029.1	protein_coding	TEC	protein_coding:TEC	TEC:processed_transcript	4	46	2	1.72558	2.1055450000000002	2.48551	0.0767648	0.00756632	0.196164	0.0773151
chr3	9406340	9406440	1358971	0	+	0.34	(0.32,0.35]	chr3	142655	80	INTRON	INTRON	SETD5	ENSG00000168137.20	ENST00000402198.7:ENST00000431285.5:ENST00000683012.1:ENST00000463180.5:ENST00000478475.5:ENST00000415650.5:ENST00000682536.1:ENST00000663774.1:ENST00000665872.1:ENST00000666307.1:ENST00000693430.1:ENST00000691925.1:ENST00000684606.1:ENST00000691175.1:ENST00000688835.1:ENST00000683262.1:ENST00000443339.5:ENST00000406341.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	55	2	1.63843	2.10553	2.57263	0.0360919	0.0312297	0.152563	0.13151
chr3	185671841	185671940	1884804	0	-	0.333333	(0.32,0.35]	chr3	188520	131	INTRON	INTRON	IGF2BP2	ENSG00000073792.16	ENST00000382199.7:ENST00000346192.7:ENST00000457616.6:ENST00000421047.3:ENST00000494906.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	55	2	1.63843	2.10553	2.57263	0.0360919	0.0312297	0.152563	0.13151
chr16	58620583	58620683	6496290	0	-	0.4	(0.378,0.408]	chr16	628638	207	INTRON	INTRON	CNOT1	ENSG00000125107.19	ENST00000317147.10:ENST00000569240.5:ENST00000567188.5:ENST00000441024.6:ENST00000565605.5:ENST00000564557.1:ENST00000569916.1:ENST00000565697.1:ENST00000569020.5:ENST00000568158.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	122	2	1.88712	2.105435	2.32375	0.00832823	0.00134834	0.0774402	0.0338207
chr6	17641348	17641446	3065543	0	-	0.479592	(0.476,0.515]	chr6	284800	9	INTRON	INTRON	NUP153	ENSG00000124789.12	ENST00000613258.4:ENST00000537253.5:ENST00000262077.3	protein_coding	protein_coding	protein_coding	protein_coding	6	63	2	1.58842	2.10539	2.62236	0.0406588	0.00517	0.161534	0.0631506
chr10	130175489	130175589	4536729	0	+	0.41	(0.408,0.44]	chr10	418829	4	SS5_PROX	SS5_PROX:INTRON	GLRX3	ENSG00000108010.12	ENST00000331244.10:ENST00000481034.1:ENST00000368644.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	41	2	1.69566	2.10529	2.51492	0.0453922	0.0329839	0.164236	0.133816
chr22	20536516	20536616	7479640	0	+	0.41	(0.408,0.44]	chr22	762964	118	INTRON	INTRON	MED15	ENSG00000099917.17	ENST00000445987.5:ENST00000444094.5:ENST00000414658.5:ENST00000486656.5:ENST00000433831.5:ENST00000432052.5:ENST00000292733.11:ENST00000263205.11:ENST00000477824.5:ENST00000406969.5:ENST00000382974.6:ENST00000441501.5:ENST00000438962.1:ENST00000445189.5:ENST00000451058.5:ENST00000473028.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	41	2	1.69566	2.10529	2.51492	0.0453922	0.0329839	0.164236	0.133816
chr4	1293071	1293171	1909539	0	+	0.43	(0.408,0.44]	chr4	191466	27	INTRON	INTRON	MAEA	ENSG00000090316.16	ENST00000505177.6:ENST00000513301.5:ENST00000303400.9:ENST00000264750.10:ENST00000503653.5:ENST00000512308.5:ENST00000502558.5:ENST00000509254.5:ENST00000514708.5:ENST00000508634.1:ENST00000503693.1:ENST00000509531.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	41	2	1.69566	2.10529	2.51492	0.0453922	0.0329839	0.164236	0.133816
chr7	140923465	140923565	3663721	0	-	0.37	(0.35,0.378]	chr7	340105	729	INTRON	INTRON	BRAF	ENSG00000157764.14	ENST00000496384.7:ENST00000644969.2:ENST00000646891.1:ENST00000644905.1:ENST00000642228.1:ENST00000288602.11:ENST00000646730.1:ENST00000497784.2:ENST00000642272.1:ENST00000642808.1:ENST00000643790.1:ENST00000469930.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	70	2	1.71411	2.10527	2.49643	0.0310697	0.00752974	0.13151	0.0773151
chr19	21398062	21398159	7040830	0	+	0.453608	(0.44,0.476]	chr19	702017	8	UTR3	UTR3:EXON_MRNA:INTRON	ZNF493	ENSG00000196268.12	ENST00000596302.5:ENST00000392288.7:ENST00000355504.4:ENST00000594390.5:ENST00000596815.1:ENST00000339914.6:ENST00000599461.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	55	2	1.61163	2.1052549999999997	2.59888	0.0598319	0.00487719	0.169278	0.0640618
chrX	153760091	153760191	7911297	0	-	0.34	(0.32,0.35]	chrX	805122	212	INTRON	INTRON	PLXNB3-AS1	ENSG00000232725.1	ENST00000434284.1	lncRNA	lncRNA	lncRNA	lncRNA	7	89	2	1.98909	2.105245	2.2214	0.0108865	0.0103516	0.0923273	0.085045
chr6	17694604	17694703	3066091	0	-	0.484848	(0.476,0.515]	chr6	284872	56	INTRON	INTRON	NUP153	ENSG00000124789.12	ENST00000613258.4:ENST00000537253.5:ENST00000262077.3	protein_coding	protein_coding	protein_coding	protein_coding	8	86	2	1.93099	2.105095	2.2792	0.0140312	0.00299196	0.0959618	0.0503888
chr12	93437751	93437851	5388197	0	-	0.49	(0.476,0.515]	chr12	513727	130	INTRON	INTRON	UBE2N	ENSG00000177889.10	ENST00000318066.7:ENST00000550657.1:ENST00000549833.1:ENST00000549490.1:ENST00000552442.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	46	2	1.99341	2.1050899999999997	2.21677	0.037389	0.0207026	0.155878	0.110999
chr19	2166558	2166658	6996195	0	+	0.49	(0.476,0.515]	chr19	693417	19	INTRON	INTRON	DOT1L	ENSG00000104885.19	ENST00000398665.8:ENST00000686010.1:ENST00000452696.5:ENST00000478937.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	46	2	1.99341	2.1050899999999997	2.21677	0.037389	0.0207026	0.155878	0.110999
chr19	47624795	47624894	7085919	0	+	0.494949	(0.476,0.515]	chr19	709045	168	INTRON	INTRON	ENSG00000268746	ENSG00000268746.1	ENST00000599924.1	lncRNA	lncRNA	lncRNA	lncRNA	4	46	2	1.99341	2.1050899999999997	2.21677	0.037389	0.0207026	0.155878	0.110999
chr7	102544876	102544957	3588595	0	-	0.506173	(0.476,0.515]	chr7	335026	1	SS3_PROX	SS3_PROX:SS5_PROX:INTRON	POLR2J3	ENSG00000168255.20	ENST00000489144.5:ENST00000464525.5:ENST00000379340.9:ENST00000486319.5:ENST00000503564.5:ENST00000511773.5:ENST00000513506.6:ENST00000508848.5:ENST00000504677.5:ENST00000506060.5:ENST00000502415.5:ENST00000507355.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	46	2	1.99341	2.1050899999999997	2.21677	0.037389	0.0207026	0.155878	0.110999
chr10	21664243	21664343	4405723	0	+	0.27	[0,0.28]	chr10	406498	4	SS5_PROX	SS5_PROX:INTRON	MLLT10	ENSG00000078403.17	ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000651298.1:ENST00000377059.7:ENST00000652258.1:ENST00000651382.1:ENST00000438473.6:ENST00000650921.1:ENST00000651405.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	130	2	1.63606	2.1048999999999998	2.57374	0.0468781	0.00121496	0.151917	0.0322637
chr16	211967	212067	6426013	0	-	0.64	(0.57,1]	chr16	617437	23	INTRON	INTRON	LUC7L	ENSG00000007392.17	ENST00000337351.8:ENST00000426094.5:ENST00000397783.5:ENST00000629543.2:ENST00000490762.5:ENST00000293872.13:ENST00000419516.5:ENST00000397780.5:ENST00000418978.5:ENST00000430864.5:ENST00000443357.5:ENST00000494366.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	13	66	2	1.81414	2.10485	2.39556	0.00327402	0.00141347	0.0526715	0.0340865
chr1	1390051	1390129	359813	0	-	0.461538	(0.44,0.476]	chr1	41770	2	SS5_PROX	SS5_PROX:INTRON	CCNL2	ENSG00000221978.13	ENST00000400809.8:ENST00000480479.5:ENST00000482621.5:ENST00000496007.5:ENST00000482365.5:ENST00000481223.6:ENST00000418865.6:ENST00000505849.5:ENST00000488340.5:ENST00000492998.5:ENST00000469113.5:ENST00000480646.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	26	260	2	2.02417	2.1048	2.18543	8.68308e-4	3.67165e-4	0.0269634	0.0172042
chr10	31902480	31902580	4590057	0	-	0.46	(0.44,0.476]	chr10	423163	405	INTRON	INTRON	ARHGAP12	ENSG00000165322.18	ENST00000344936.7:ENST00000375245.8:ENST00000396144.8:ENST00000375250.9:ENST00000311380.8	protein_coding	protein_coding	protein_coding	protein_coding	5	47	2	1.60176	2.10475	2.60774	0.0389597	0.0255874	0.160861	0.120269
chr12	112374161	112374261	5417672	0	-	0.45	(0.44,0.476]	chr12	517670	541	INTRON	INTRON	HECTD4	ENSG00000173064.14	ENST00000550722.5:ENST00000377560.9:ENST00000682272.1:ENST00000550724.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	47	2	1.60176	2.10475	2.60774	0.0389597	0.0255874	0.160861	0.120269
chr1	154232600	154232700	227647	0	+	0.43	(0.408,0.44]	chr1	26249	35	INTRON	INTRON	UBAP2L	ENSG00000143569.19	ENST00000343815.10:ENST00000271877.11:ENST00000613315.4:ENST00000441890.5:ENST00000412596.5:ENST00000368504.5:ENST00000428931.6:ENST00000437652.5:ENST00000456325.5:ENST00000361546.6	protein_coding	protein_coding	protein_coding	protein_coding	3	34	2	1.93243	2.104705	2.27698	0.0583528	0.0441194	0.167723	0.162255
chr17	36583444	36583541	6602249	0	+	0.412371	(0.408,0.44]	chr17	642583	11	INTRON	INTRON	GGNBP2	ENSG00000278311.5	ENST00000613102.5:ENST00000618837.4:ENST00000619573.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	34	2	1.93243	2.104705	2.27698	0.0583528	0.0441194	0.167723	0.162255
chr6	126010228	126010326	2956305	0	+	0.418367	(0.408,0.44]	chr6	278028	4	INTRON	INTRON	TRMT11	ENSG00000066651.20	ENST00000479748.5:ENST00000368332.7:ENST00000648977.1:ENST00000468097.5:ENST00000334379.11:ENST00000466316.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	34	2	1.93243	2.104705	2.27698	0.0583528	0.0441194	0.167723	0.162255
chr21	10425885	10425985	7368253	0	+	0.39	(0.378,0.408]	chr21	751975	106	INTRON	INTRON	BAGE2	ENSG00000187172.15	ENST00000474011.5:ENST00000470054.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	7	80	2	1.9808	2.104695	2.22859	0.0123757	0.00763308	0.0916369	0.0777238
chr6	68694518	68694618	2886911	0	+	0.4	(0.378,0.408]	chr6	273730	547	INTRON	INTRON	ADGRB3	ENSG00000135298.15	ENST00000370598.6:ENST00000684661.1:ENST00000546190.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	80	2	1.9808	2.104695	2.22859	0.0123757	0.00763308	0.0916369	0.0777238
chr1	15430149	15430244	32630	0	+	0.378947	(0.378,0.408]	chr1	3927	16	UTR3	UTR3:EXON_MRNA	EFHD2	ENSG00000142634.13	ENST00000375980.9	protein_coding	protein_coding	protein_coding	protein_coding	3	37	2	1.94681	2.104665	2.26252	0.056222	0.0457723	0.18407	0.149888
chr10	90900962	90901057	4485627	0	+	0.378947	(0.378,0.408]	chr10	412927	4	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	RPP30	ENSG00000148688.14	ENST00000413330.5:ENST00000371703.8:ENST00000480406.6:ENST00000489806.5:ENST00000470933.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	37	2	1.94681	2.104665	2.26252	0.056222	0.0457723	0.18407	0.149888
chr2	61359360	61359460	1129429	0	-	0.25	[0,0.28]	chr2	121448	83	INTRON	INTRON	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000453133.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	59	2	1.71402	2.104645	2.49527	0.047753	0.0436497	0.170327	0.14882
chr7	111282394	111282493	3621306	0	-	0.323232	(0.32,0.35]	chr7	337093	3185	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	89	2	1.80306	2.104615	2.40617	0.0246393	0.0040507	0.12011	0.0578376
chr2	61363245	61363345	1129468	0	-	0.38	(0.378,0.408]	chr2	121448	122	INTRON	INTRON	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000453133.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	57	2	1.99678	2.10458	2.21238	0.0218124	0.0177959	0.11491	0.113452
chr11	2948428	2948527	4891533	0	-	0.59596	(0.57,1]	chr11	458261	24	INTRON	INTRON	NAP1L4	ENSG00000205531.13	ENST00000620138.4:ENST00000380542.9:ENST00000469805.5:ENST00000469089.5:ENST00000526115.5:ENST00000492594.6:ENST00000526023.5:ENST00000492685.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	29	2	1.63919	2.104575	2.56996	0.05421	0.00499145	0.164887	0.0646039
chr16	21511631	21511731	6461473	0	-	0.61	(0.57,1]	chr16	623383	51	INTRON	INTRON	SMG1P3	ENSG00000180747.15	ENST00000522841.6:ENST00000437413.2:ENST00000435197.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	5	29	2	1.63919	2.104575	2.56996	0.05421	0.00499145	0.164887	0.0646039
chr12	112456463	112456563	5230178	0	+	0.54	(0.515,0.57]	chr12	495866	4	SS5_PROX	SS5_PROX:INTRON	PTPN11	ENSG00000179295.19	ENST00000688597.1:ENST00000692624.1:ENST00000685487.1:ENST00000690210.1:ENST00000639857.2:ENST00000392597.5:ENST00000687906.1:ENST00000351677.7:ENST00000635625.1:ENST00000530818.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	65	2	1.84511	2.104555	2.364	0.0167182	0.00447856	0.110511	0.0593175
chr12	47780577	47780676	5130450	0	+	0.515152	(0.476,0.515]	chr12	483587	4	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	SLC48A1	ENSG00000211584.14	ENST00000442892.2:ENST00000551301.1:ENST00000442218.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	14	147	2	2.00877	2.1045	2.20023	0.00338095	0.00101894	0.0517233	0.0293964
chr10	35509228	35509328	4426239	0	+	0.5	(0.476,0.515]	chr10	407931	73	INTRON	INTRON	CCNY	ENSG00000108100.18	ENST00000374706.5:ENST00000490012.6:ENST00000493157.6:ENST00000374704.8:ENST00000265375.13:ENST00000339497.7:ENST00000492478.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	41	2	1.80284	2.10446	2.40608	0.0425709	0.033161	0.148082	0.145899
chr7	152371966	152372066	3680653	0	-	0.37	(0.35,0.378]	chr7	341660	129	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000682301.1:ENST00000452749.2:ENST00000680867.1:ENST00000683800.1:ENST00000684278.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	60	2	2.09331	2.10431	2.11531	0.0315717	0.0119629	0.13151	0.0962115
chr5	28877129	28877229	2330521	0	+	0.32	(0.28,0.32]	chr5	225135	666	INTRON	INTRON	LINC02109	ENSG00000259786.7	ENST00000658190.1	lncRNA	lncRNA	lncRNA	lncRNA	11	153	2	1.90234	2.104305	2.30627	0.00740298	0.00291498	0.0770422	0.0480147
chr3	13418759	13418859	1618586	0	-	0.51	(0.476,0.515]	chr3	167237	185	INTRON	INTRON	NUP210	ENSG00000132182.13	ENST00000254508.7:ENST00000420141.3:ENST00000695492.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	97	2	1.84346	2.10429	2.36512	0.0114152	0.00246559	0.095586	0.0446195
chr6	10900323	10900420	2811880	0	+	0.42268	(0.408,0.44]	chr6	264568	11	INTRON	INTRON	SYCP2L	ENSG00000153157.13	ENST00000341041.8:ENST00000283141.11:ENST00000543878.5:ENST00000487561.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	93	2	1.6007	2.104275	2.60785	0.02345	0.00146754	0.11867	0.035104
chrX	151972468	151972564	7908618	0	-	0.572917	(0.57,1]	chrX	804815	13	EXON_MRNA	EXON_MRNA:INTRON	GABRE	ENSG00000102287.19	ENST00000370328.4:ENST00000441219.5:ENST00000491339.1:ENST00000417300.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	29	152	2	1.94625	2.104255	2.26226	3.35903e-4	6.45474e-5	0.0162832	0.00711194
chr5	38940708	38940808	2604261	0	-	0.3	(0.28,0.32]	chr5	247703	29	UTR3	UTR3:EXON_MRNA	RICTOR	ENSG00000164327.13	ENST00000357387.8:ENST00000511516.5:ENST00000296782.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	66	2	1.38068	2.104185	2.82769	0.0590236	0.0169391	0.189982	0.103888
chr18	13021497	13021597	6876880	0	+	0.36	(0.35,0.378]	chr18	681391	19	INTRON	INTRON	CEP192	ENSG00000101639.19	ENST00000325971.12:ENST00000506447.5:ENST00000589596.5:ENST00000513432.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	60	2	1.92704	2.104145	2.28125	0.0228255	0.0182271	0.125469	0.107842
chr2	32211553	32211652	730251	0	+	0.363636	(0.35,0.378]	chr2	84226	16	INTRON	INTRON	SLC30A6	ENSG00000152683.14	ENST00000357055.7:ENST00000435660.5:ENST00000282587.9:ENST00000449777.5:ENST00000454324.5:ENST00000379343.6:ENST00000406369.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	60	2	1.92704	2.104145	2.28125	0.0228255	0.0182271	0.125469	0.107842
chr8	63177703	63177802	3773080	0	+	0.30303	(0.28,0.32]	chr8	349936	19	INTRON	INTRON	YTHDF3	ENSG00000185728.17	ENST00000617200.1:ENST00000623280.3:ENST00000539294.6:ENST00000621957.4:ENST00000517371.5:ENST00000615676.1:ENST00000621413.4:ENST00000612880.4:ENST00000617952.4:ENST00000621890.4:ENST00000619337.4:ENST00000613853.4:ENST00000621820.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	119	2	1.19334	2.1041	3.01486	0.0551834	0.00162624	0.18407	0.0367966
chr17	51091189	51091289	6796721	0	-	0.5	(0.476,0.515]	chr17	671024	111	INTRON	INTRON	SPAG9	ENSG00000008294.22	ENST00000262013.12:ENST00000505279.5:ENST00000357122.8	protein_coding	protein_coding	protein_coding	protein_coding	7	77	2	1.4553	2.10408	2.75286	0.0623645	7.3224e-4	0.175357	0.0246502
chr7	73005835	73005922	3554182	0	-	0.632184	(0.57,1]	chr7	330674	4	EXON_LNCRNA	EXON_LNCRNA	STAG3L3	ENSG00000174353.17	ENST00000428423.5:ENST00000448173.5:ENST00000423834.6	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	9	52	2	1.43111	2.10406	2.77701	0.0484405	1.54125e-4	0.153635	0.0106835
chr10	49927235	49927334	4616054	0	-	0.50505	(0.476,0.515]	chr10	425206	42	INTRON	INTRON	PARG	ENSG00000227345.9	ENST00000402038.7:ENST00000616448.2:ENST00000614063.4:ENST00000610922.1:ENST00000611974.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	43	2	2.06898	2.10376	2.13854	0.0776563	0.0137491	0.196285	0.10247
chr13	48087851	48087951	5590684	0	-	0.29	(0.28,0.32]	chr13	534279	10	INTRON	INTRON	MED4	ENSG00000136146.15	ENST00000258648.7:ENST00000378586.5:ENST00000417167.2	protein_coding	protein_coding	protein_coding	protein_coding	8	108	2	2.05785	2.103635	2.14942	0.0143412	0.00560246	0.0966737	0.0678837
chr4	138196221	138196321	2245366	0	-	0.52	(0.515,0.57]	chr4	219484	106	INTRON	INTRON	SLC7A11	ENSG00000151012.13	ENST00000280612.9:ENST00000509248.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	71	2	2.08547	2.1036349999999997	2.1218	0.0289426	0.00198964	0.1274	0.0411469
chr12	50930248	50930346	5140291	0	+	0.428571	(0.408,0.44]	chr12	484759	2	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	METTL7A	ENSG00000185432.12	ENST00000548553.1:ENST00000547104.1:ENST00000332160.5:ENST00000550097.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	119	2	2.03147	2.1036200000000003	2.17577	0.00437346	0.00269594	0.0584326	0.0479115
chr11	64771363	64771463	4965232	0	-	0.34	(0.32,0.35]	chr11	467528	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	SF1	ENSG00000168066.21	ENST00000334944.9:ENST00000227503.13:ENST00000377394.7:ENST00000448404.5:ENST00000377390.8:ENST00000377387.5:ENST00000681407.1:ENST00000433274.6:ENST00000496969.1:ENST00000633899.1:ENST00000413951.5:ENST00000432725.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	99	2	1.49732	2.103495	2.70967	0.0455974	0.00105927	0.149888	0.0299929
chr7	102545039	102545120	3588597	0	-	0.407407	(0.378,0.408]	chr7	335026	3	SS3_PROX	SS3_PROX:SS5_PROX:INTRON	POLR2J3	ENSG00000168255.20	ENST00000489144.5:ENST00000464525.5:ENST00000379340.9:ENST00000486319.5:ENST00000503564.5:ENST00000511773.5:ENST00000513506.6:ENST00000508848.5:ENST00000504677.5:ENST00000506060.5:ENST00000502415.5:ENST00000507355.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	23	249	2	1.86093	2.103475	2.34602	0.00254227	1.77021e-4	0.0448135	0.0116105
chr10	28547751	28547851	4413951	0	+	0.34	(0.32,0.35]	chr10	407148	93	INTRON	INTRON	WAC	ENSG00000095787.24	ENST00000680735.1:ENST00000375664.8:ENST00000428935.6:ENST00000651598.1:ENST00000628285.3:ENST00000681112.1:ENST00000679570.1:ENST00000375646.5:ENST00000354911.9:ENST00000347934.8:ENST00000420266.6:ENST00000651885.1:ENST00000651441.1:ENST00000679398.1:ENST00000424454.5:ENST00000442148.6:ENST00000448193.5:ENST00000414108.6:ENST00000679428.1:ENST00000439676.5:ENST00000345541.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	61	2	1.46273	2.10344	2.74415	0.0451962	0.0198267	0.163755	0.109608
chr7	120988840	120988912	3393635	0	+	0.347222	(0.32,0.35]	chr7	317660	3	UTR5	UTR5:EXON_MRNA	CPED1	ENSG00000106034.18	ENST00000340646.9:ENST00000310396.10	protein_coding	protein_coding	protein_coding	protein_coding	6	61	2	1.46273	2.10344	2.74415	0.0451962	0.0198267	0.163755	0.109608
chr7	128575191	128575291	3407797	0	+	0.35	(0.32,0.35]	chr7	318339	4	SS5_PROX	SS5_PROX:INTRON	ENSG00000280828:ENSG00000242588	ENSG00000280828.1:ENSG00000242588.6	ENST00000479267.2:ENST00000605862.5	lncRNA	lncRNA	lncRNA:unprocessed_pseudogene	lncRNA:unprocessed_pseudogene	6	61	2	1.46273	2.10344	2.74415	0.0451962	0.0198267	0.163755	0.109608
chr11	68576642	68576742	4818516	0	+	0.42	(0.408,0.44]	chr11	449013	2	INTRON	INTRON	PPP6R3	ENSG00000110075.15	ENST00000534534.5:ENST00000524845.5:ENST00000393800.7:ENST00000265637.8:ENST00000524904.5:ENST00000393801.7:ENST00000265636.9:ENST00000529710.5:ENST00000527403.6:ENST00000534190.5:ENST00000525421.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	46	2	2.05947	2.103395	2.14732	0.0333232	0.0237354	0.134145	0.129075
chr6	133970052	133970151	2961926	0	+	0.454545	(0.44,0.476]	chr6	278515	7	INTRON	INTRON	TBPL1	ENSG00000028839.10	ENST00000613034.4:ENST00000416965.5:ENST00000457715.1:ENST00000367871.5:ENST00000237264.9:ENST00000367869.1	protein_coding	protein_coding	protein_coding	protein_coding	7	76	2	1.88483	2.103335	2.32184	0.0149825	0.00609071	0.107704	0.0676501
chr8	100946383	100946482	4005913	0	-	0.515152	(0.476,0.515]	chr8	366668	115	INTRON	INTRON	YWHAZ	ENSG00000164924.18	ENST00000395958.6:ENST00000395957.6:ENST00000457309.2:ENST00000395956.7:ENST00000353245.7:ENST00000521309.5:ENST00000522542.5:ENST00000395953.6:ENST00000395948.6:ENST00000395951.7:ENST00000419477.6:ENST00000521607.5:ENST00000480304.5:ENST00000518736.5:ENST00000517727.5:ENST00000521328.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	11	116	2	1.88465	2.10331	2.32197	0.00780969	0.00133705	0.0759016	0.0335955
chr15	84570162	84570256	6251371	0	-	0.670213	(0.57,1]	chr15	596601	8	EXON_LNCRNA	EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	UBE2Q2P1	ENSG00000189136.9	ENST00000354771.8:ENST00000339094.5:ENST00000561403.6:ENST00000558251.5:ENST00000559871.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	10	54	2	1.80956	2.10317	2.39678	0.00831365	0.00143653	0.0774402	0.0347139
chr8	31045372	31045472	3728047	0	+	0.36	(0.35,0.378]	chr8	346522	110	INTRON	INTRON	WRN	ENSG00000165392.11	ENST00000650667.1:ENST00000298139.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	15	173	2	1.84522	2.103155	2.36109	0.00638982	4.68792e-4	0.0693997	0.0196287
chr22	41205362	41205386	7522411	0	+	0.541667	(0.515,0.57]	chr22	768694	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	L3MBTL2	ENSG00000100395.15	ENST00000481902.5:ENST00000489136.5:ENST00000466589.5:ENST00000216237.10:ENST00000453659.1:ENST00000479978.5:ENST00000452106.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	78	2	1.73168	2.10309	2.4745	0.0119342	0.00279583	0.0962115	0.0469265
chr10	124925267	124925366	4535342	0	+	0.30303	(0.28,0.32]	chr10	418562	76	INTRON	INTRON	ENSG00000249456	ENSG00000249456.1	ENST00000508096.1	lncRNA	lncRNA	lncRNA	lncRNA	4	58	2	1.91611	2.103045	2.28998	0.0539102	0.0166401	0.164153	0.110511
chr17	81854809	81854893	6850055	0	-	0.333333	(0.32,0.35]	chr17	678345	3	SS5_PROX	SS5_PROX:INTRON	P4HB	ENSG00000185624.16	ENST00000680083.1:ENST00000680416.1:ENST00000575069.6:ENST00000681030.1:ENST00000680884.1:ENST00000681161.1:ENST00000681515.1:ENST00000679470.1:ENST00000571617.2:ENST00000679688.1:ENST00000680226.1:ENST00000680400.1:ENST00000574914.2:ENST00000331483.9:ENST00000680914.1:ENST00000680593.1:ENST00000681420.1:ENST00000681693.1:ENST00000576390.6:ENST00000681835.1:ENST00000681954.1:ENST00000681566.1:ENST00000680076.1:ENST00000680105.1:ENST00000680368.1:ENST00000681872.1:ENST00000466567.3:ENST00000679396.1:ENST00000415593.6:ENST00000679889.1:ENST00000681571.1:ENST00000680719.1:ENST00000680191.1:ENST00000680547.1:ENST00000680799.1:ENST00000680208.1:ENST00000679439.1:ENST00000439918.7:ENST00000472244.6:ENST00000681031.1:ENST00000680846.1:ENST00000681068.1:ENST00000477607.7:ENST00000679366.1:ENST00000681020.1:ENST00000681614.1:ENST00000681485.1:ENST00000679628.1:ENST00000679455.1:ENST00000680259.1:ENST00000680559.1:ENST00000680909.1:ENST00000681760.1:ENST00000681933.1:ENST00000570907.6:ENST00000680732.1:ENST00000680838.1:ENST00000680847.1:ENST00000574007.6:ENST00000573778.7:ENST00000478034.5:ENST00000576380.6:ENST00000576052.2:ENST00000471535.2:ENST00000576541.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	76	2	1.99307	2.102995	2.21292	0.04271	0.00445585	0.148082	0.0610799
chr3	141983275	141983375	1833771	0	-	0.38	(0.378,0.408]	chr3	184307	42	INTRON	INTRON	TFDP2	ENSG00000114126.18	ENST00000489671.6:ENST00000499676.5:ENST00000486111.5:ENST00000477292.5:ENST00000495310.5:ENST00000467072.5:ENST00000487734.5:ENST00000479040.5:ENST00000467667.5:ENST00000478006.5:ENST00000497579.5:ENST00000492919.1:ENST00000464782.5:ENST00000488107.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	57	2	2.09402	2.10298	2.11194	0.0292534	0.0126438	0.128055	0.0982897
chr1	2261149	2261248	2495	0	+	0.393939	(0.378,0.408]	chr1	557	127	INTRON	INTRON	SKI	ENSG00000157933.10	ENST00000378536.5:ENST00000508416.1:ENST00000478223.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	48	2	2.04292	2.102975	2.16303	0.0326035	0.0252473	0.145164	0.12011
chr11	108221502	108221601	5035177	0	-	0.40404	(0.378,0.408]	chr11	474469	126	INTRON	INTRON	NPAT	ENSG00000149308.17	ENST00000278612.9:ENST00000610253.5:ENST00000531384.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	48	2	2.04292	2.102975	2.16303	0.0326035	0.0252473	0.145164	0.12011
chr12	55776203	55776303	5332406	0	-	0.53	(0.515,0.57]	chr12	509126	152	INTRON	INTRON	SARNP	ENSG00000205323.9	ENST00000546604.5:ENST00000552884.5:ENST00000336133.8:ENST00000552080.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	39	2	2.01737	2.102935	2.1885	0.0352218	0.0202537	0.137535	0.121364
chr2	159761506	159761603	899982	0	+	0.515464	(0.515,0.57]	chr2	99564	18	INTRON	INTRON	MARCHF7	ENSG00000136536.15	ENST00000539065.5:ENST00000259050.8:ENST00000409175.6:ENST00000409591.5:ENST00000420397.1:ENST00000478396.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	39	2	2.01737	2.102935	2.1885	0.0352218	0.0202537	0.137535	0.121364
chr8	33489378	33489465	3729446	0	+	0.517241	(0.515,0.57]	chr8	346737	2	SS5_PROX	SS5_PROX:INTRON	MAK16	ENSG00000198042.11	ENST00000360128.11:ENST00000518389.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	39	2	2.01737	2.102935	2.1885	0.0352218	0.0202537	0.137535	0.121364
chr11	64770639	64770728	4965224	0	-	0.41573	(0.408,0.44]	chr11	467525	1	SS3_PROX	SS3_PROX:INTRON	SF1	ENSG00000168066.21	ENST00000334944.9:ENST00000227503.13:ENST00000377394.7:ENST00000448404.5:ENST00000377390.8:ENST00000377387.5:ENST00000681407.1:ENST00000433274.6:ENST00000496969.1:ENST00000633899.1:ENST00000413951.5:ENST00000432725.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	78	2	1.7519	2.102925	2.45395	0.0239555	0.00366321	0.129259	0.0535094
chr12	122222556	122222653	5439680	0	-	0.43299	(0.408,0.44]	chr12	520185	1	INTRON	INTRON	DIABLO	ENSG00000184047.20	ENST00000443649.9:ENST00000650715.1:ENST00000464942.7:ENST00000353548.11:ENST00000644227.1:ENST00000644509.1:ENST00000342392.3:ENST00000645569.1:ENST00000267169.11:ENST00000540535.6:ENST00000541273.6:ENST00000541656.6:ENST00000446652.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	78	2	1.7519	2.102925	2.45395	0.0239555	0.00366321	0.129259	0.0535094
chr1	40229237	40229336	80649	0	+	0.393939	(0.378,0.408]	chr1	10437	62	INTRON	INTRON	RLF	ENSG00000117000.9	ENST00000372771.5	protein_coding	protein_coding	protein_coding	protein_coding	3	35	2	1.89621	2.10291	2.30961	0.055088	0.0488044	0.173377	0.165463
chr1	92293923	92294023	505327	0	-	0.4	(0.378,0.408]	chr1	59757	20	INTRON	INTRON	GLMN	ENSG00000174842.17	ENST00000370360.8:ENST00000495106.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	35	2	1.89621	2.10291	2.30961	0.055088	0.0488044	0.173377	0.165463
chr10	74230474	74230573	4456563	0	+	0.393939	(0.378,0.408]	chr10	411547	55	INTRON	INTRON	ADK	ENSG00000156110.15	ENST00000672429.1:ENST00000539909.6:ENST00000286621.7:ENST00000673352.1:ENST00000673310.1:ENST00000672920.1:ENST00000672394.1:ENST00000372734.5:ENST00000673027.1:ENST00000541550.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	35	2	1.89621	2.10291	2.30961	0.055088	0.0488044	0.173377	0.165463
chr3	196789430	196789530	1595990	0	+	0.39	(0.378,0.408]	chr3	165308	62	INTRON	INTRON	PAK2	ENSG00000180370.10	ENST00000327134.7	protein_coding	protein_coding	protein_coding	protein_coding	3	35	2	1.89621	2.10291	2.30961	0.055088	0.0488044	0.173377	0.165463
chr6	18244407	18244507	3069043	0	-	0.4	(0.378,0.408]	chr6	285186	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	DEK	ENSG00000124795.17	ENST00000652689.1:ENST00000652292.1:ENST00000651624.1:ENST00000515770.2:ENST00000651992.1:ENST00000507591.2:ENST00000505224.5:ENST00000244776.11:ENST00000652576.1:ENST00000512145.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	35	2	1.89621	2.10291	2.30961	0.055088	0.0488044	0.173377	0.165463
chrX	110035930	110036030	7700366	0	+	0.4	(0.378,0.408]	chrX	788130	314	INTRON	INTRON	TMEM164	ENSG00000157600.12	ENST00000372072.7:ENST00000471255.5:ENST00000372073.5:ENST00000372068.7:ENST00000288381.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	35	2	1.89621	2.10291	2.30961	0.055088	0.0488044	0.173377	0.165463
chr2	173952176	173952276	1268939	0	-	0.32	(0.28,0.32]	chr2	134213	174	INTRON	INTRON	SP3	ENSG00000172845.18	ENST00000650743.1:ENST00000310015.12:ENST00000416195.1:ENST00000418194.7:ENST00000652005.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	71	2	1.86798	2.102845	2.33771	0.0335733	0.0142701	0.134145	0.103838
chr2	235537935	235538035	1041776	0	+	0.38	(0.378,0.408]	chr2	111222	130	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1:ENST00000402604.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	57	2	1.94559	2.10284	2.26009	0.0211434	0.0188651	0.122929	0.108861
chr1	10081396	10081495	19612	0	+	0.393939	(0.378,0.408]	chr1	1847	84	INTRON	INTRON	UBE4B	ENSG00000130939.20	ENST00000672724.1:ENST00000253251.12:ENST00000343090.11	protein_coding	protein_coding	protein_coding	protein_coding	3	35	2	1.81685	2.1027899999999997	2.38873	0.0597868	0.0458857	0.189982	0.149888
chr1	30904159	30904259	411471	0	-	0.39	(0.378,0.408]	chr1	49595	229	INTRON	INTRON	SDC3	ENSG00000162512.16	ENST00000339394.7	protein_coding	protein_coding	protein_coding	protein_coding	3	35	2	1.81685	2.1027899999999997	2.38873	0.0597868	0.0458857	0.189982	0.149888
chr1	245980595	245980695	675436	0	-	0.4	(0.378,0.408]	chr1	79709	246	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000493441.5:ENST00000488153.5:ENST00000492487.5:ENST00000391836.3:ENST00000464398.1:ENST00000453676.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	35	2	1.81685	2.1027899999999997	2.38873	0.0597868	0.0458857	0.189982	0.149888
chr6	34642100	34642200	3085671	0	-	0.38	(0.378,0.408]	chr6	288679	348	INTRON	INTRON	ILRUN	ENSG00000196821.10	ENST00000374026.7:ENST00000374023.8:ENST00000374021.1	protein_coding	protein_coding	protein_coding	protein_coding	3	35	2	1.81685	2.1027899999999997	2.38873	0.0597868	0.0458857	0.189982	0.149888
chr9	83979552	83979652	4274344	0	-	0.6	(0.57,1]	chr9	393183	7	INTRON	INTRON	HNRNPK	ENSG00000165119.21	ENST00000376281.8:ENST00000376263.8:ENST00000360384.9:ENST00000457156.5:ENST00000472778.5:ENST00000483135.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	51	2	1.54289	2.10269	2.66249	0.0196542	9.0016e-4	0.120063	0.0277303
chr16	24761655	24761755	6329535	0	+	0.43	(0.408,0.44]	chr16	605945	29	INTRON	INTRON	TNRC6A	ENSG00000090905.19	ENST00000395799.8:ENST00000315183.11:ENST00000562829.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	77	2	1.84301	2.102645	2.36228	0.0174311	0.00528443	0.112689	0.0635846
chr6	38012370	38012469	2858960	0	+	0.494949	(0.476,0.515]	chr6	270237	82	INTRON	INTRON	ZFAND3	ENSG00000156639.12	ENST00000287218.9:ENST00000373391.6:ENST00000474522.5:ENST00000373389.5	protein_coding	protein_coding	protein_coding	protein_coding	9	91	2	1.82399	2.10264	2.38129	0.00866166	0.00474233	0.0842392	0.0600445
chr7	36438106	36438205	3307507	0	+	0.363636	(0.35,0.378]	chr7	307191	94	INTRON	INTRON	ANLN	ENSG00000011426.11	ENST00000396068.6:ENST00000265748.7:ENST00000428612.5:ENST00000457743.1	protein_coding	protein_coding	protein_coding	protein_coding	3	37	2	2.04358	2.10264	2.1617	0.0771502	0.0329533	0.196285	0.145171
chrX	124027484	124027583	7717416	0	+	0.363636	(0.35,0.378]	chrX	789500	4	INTRON	INTRON	STAG2	ENSG00000101972.20	ENST00000394477.5:ENST00000218089.13:ENST00000455404.5:ENST00000483575.5:ENST00000687810.1:ENST00000687071.1:ENST00000469481.1:ENST00000371160.5:ENST00000435103.5:ENST00000687852.1:ENST00000371145.8:ENST00000692982.1:ENST00000371157.7:ENST00000691035.1:ENST00000686802.1:ENST00000691383.1:ENST00000686127.1:ENST00000371144.7:ENST00000458176.5:ENST00000466748.5:ENST00000471107.1:ENST00000428941.5:ENST00000435215.5:ENST00000394478.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	37	2	2.04358	2.10264	2.1617	0.0771502	0.0329533	0.196285	0.145171
chr16	22504551	22504651	6322651	0	+	0.48	(0.476,0.515]	chr16	605439	124	INTRON	INTRON	NPIPB5	ENSG00000243716.11	ENST00000415654.5:ENST00000415833.6:ENST00000546168.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	21	220	2	1.75613	2.10262	2.44911	0.00322453	1.95937e-4	0.0524329	0.0128173
chr21	39309947	39310047	7465506	0	-	0.36	(0.35,0.378]	chr21	760568	110	INTRON	INTRON	BRWD1	ENSG00000185658.14	ENST00000333229.6:ENST00000342449.8:ENST00000380800.7:ENST00000341322.4:ENST00000470108.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	92	2	2.03655	2.102575	2.1686	0.0116706	0.00535994	0.0891208	0.0663076
chr3	9425588	9425688	1359170	0	+	0.49	(0.476,0.515]	chr3	142678	1	SS3_PROX	SS3_PROX:INTRON	SETD5	ENSG00000168137.20	ENST00000402198.7:ENST00000431285.5:ENST00000683012.1:ENST00000463180.5:ENST00000478475.5:ENST00000415650.5:ENST00000682536.1:ENST00000663774.1:ENST00000665872.1:ENST00000666307.1:ENST00000693430.1:ENST00000691925.1:ENST00000684606.1:ENST00000691175.1:ENST00000688835.1:ENST00000683262.1:ENST00000443339.5:ENST00000406341.5:ENST00000670063.1:ENST00000468208.2:ENST00000691299.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	66	2	1.79187	2.102575	2.41328	0.0362169	0.00355364	0.138959	0.0547657
chr7	105064116	105064216	3375128	0	+	0.33	(0.32,0.35]	chr7	315892	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	KMT2E	ENSG00000005483.22	ENST00000622386.2:ENST00000257745.9:ENST00000334884.9:ENST00000311117.8:ENST00000478990.5:ENST00000495267.5:ENST00000476671.5:ENST00000667857.1:ENST00000482560.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	14	168	2	2.04219	2.10255	2.16291	0.00452463	0.00156312	0.0595107	0.0365263
chr2	127759434	127759534	1225357	0	-	0.5	(0.476,0.515]	chr2	130486	210	INTRON	INTRON	WDR33	ENSG00000136709.12	ENST00000322313.9:ENST00000436787.5:ENST00000393006.5	protein_coding	protein_coding	protein_coding	protein_coding	3	34	2	1.72558	2.102535	2.47949	0.0767648	0.0326974	0.196164	0.145164
chr5	95512809	95512904	2680548	0	-	0.494737	(0.476,0.515]	chr5	253313	3	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	TTC37	ENSG00000198677.12	ENST00000649566.1:ENST00000358746.7:ENST00000508181.5:ENST00000512026.5:ENST00000515176.5:ENST00000507805.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	34	2	1.72558	2.102535	2.47949	0.0767648	0.0326974	0.196164	0.145164
chrX	66212241	66212341	7673186	0	+	0.33	(0.32,0.35]	chrX	785355	36	INTRON	INTRON	HEPH	ENSG00000089472.18	ENST00000519389.6:ENST00000683049.1:ENST00000458621.6:ENST00000684042.1:ENST00000343002.7:ENST00000336279.9:ENST00000441993.7:ENST00000419594.6:ENST00000682362.1:ENST00000425114.2:ENST00000682927.1:ENST00000683420.1:ENST00000684071.1:ENST00000684625.1:ENST00000684603.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	66	2	1.67393	2.1025	2.53107	0.0496128	0.00860484	0.174685	0.0784134
chr10	73060968	73061067	4647482	0	-	0.282828	(0.28,0.32]	chr10	427530	70	INTRON	INTRON	P4HA1	ENSG00000122884.13	ENST00000394890.7:ENST00000307116.6:ENST00000373008.6:ENST00000440381.5:ENST00000263556.3	protein_coding	protein_coding	protein_coding	protein_coding	4	52	2	1.81152	2.1024950000000002	2.39347	0.0504457	0.034446	0.156383	0.147767
chr21	10434265	10434365	7368337	0	+	0.52	(0.515,0.57]	chr21	751975	190	INTRON	INTRON	BAGE2	ENSG00000187172.15	ENST00000474011.5:ENST00000470054.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	7	65	2	1.98329	2.102475	2.22166	0.0105419	0.00735516	0.0860389	0.0765982
chr16	7969134	7969234	6440199	0	-	0.35	(0.32,0.35]	chr16	620339	744	INTRON	INTRON	ENSG00000260289	ENSG00000260289.2	ENST00000670665.1:ENST00000654046.1:ENST00000567103.2	lncRNA	lncRNA	lncRNA	lncRNA	7	89	2	1.83295	2.10247	2.37199	0.0224097	0.00465833	0.11692	0.0629753
chr4	139354298	139354398	2050231	0	+	0.52	(0.515,0.57]	chr4	203339	2	SS5_PROX	SS5_PROX:INTRON	NAA15	ENSG00000164134.13	ENST00000296543.10:ENST00000398947.1:ENST00000468029.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	55	2	2.08547	2.102465	2.11946	0.0289426	0.00559899	0.1274	0.0678837
chr8	31044272	31044372	3728036	0	+	0.45	(0.44,0.476]	chr8	346522	99	INTRON	INTRON	WRN	ENSG00000165392.11	ENST00000650667.1:ENST00000298139.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	99	2	1.72421	2.10244	2.48067	0.0285163	5.78772e-4	0.12666	0.0218339
chr19	11122973	11123073	7017173	0	+	0.36	(0.35,0.378]	chr19	697497	4	SS3_PROX	SS3_PROX:INTRON	LDLR	ENSG00000130164.14	ENST00000557933.5:ENST00000558518.6:ENST00000545707.5:ENST00000535915.5:ENST00000455727.6:ENST00000558013.5:ENST00000252444.9	protein_coding	protein_coding	protein_coding	protein_coding	8	93	2	1.77377	2.102425	2.43108	0.0180971	0.00345501	0.107237	0.0539802
chr2	55047483	55047582	1121380	0	-	0.373737	(0.35,0.378]	chr2	120167	7	INTRON	INTRON	RTN4	ENSG00000115310.19	ENST00000404909.5:ENST00000394611.6:ENST00000317610.11:ENST00000357732.8:ENST00000337526.11:ENST00000357376.7:ENST00000438462.1:ENST00000427710.5	protein_coding	protein_coding	protein_coding	protein_coding	17	190	2	2.09147	2.102405	2.11334	0.00380443	6.17553e-4	0.0542786	0.0223951
chr3	100286597	100286696	1465829	0	+	0.454545	(0.44,0.476]	chr3	153613	24	INTRON	INTRON	TBC1D23	ENSG00000036054.13	ENST00000394144.9:ENST00000485687.5:ENST00000344949.9:ENST00000486274.5:ENST00000471098.1:ENST00000475134.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	107	2	1.81921	2.10237	2.38553	0.0142184	9.57032e-4	0.0960818	0.0284484
chr19	4420170	4420270	7001939	0	+	0.49	(0.476,0.515]	chr19	694529	17	INTRON	INTRON	CHAF1A	ENSG00000167670.16	ENST00000301280.10:ENST00000587739.1:ENST00000585371.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	92	2	1.68084	2.1023199999999997	2.5238	0.0172143	0.00218334	0.104099	0.0435144
chr1	179191061	179191161	592693	0	-	0.44	(0.408,0.44]	chr1	71074	481	INTRON	INTRON	ABL2	ENSG00000143322.21	ENST00000502732.6:ENST00000367623.8:ENST00000507173.5:ENST00000511413.5:ENST00000668691.1:ENST00000392043.4:ENST00000660584.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	47	2	1.55035	2.1022749999999997	2.6542	0.0455214	0.0227514	0.164236	0.117618
chr1	28507180	28507272	57179	0	+	0.369565	(0.35,0.378]	chr1	7378	10	EXON_MRNA	EXON_MRNA:INTRON	RCC1:SNHG3	ENSG00000180198.17:ENSG00000242125.3	ENST00000398958.6:ENST00000649185.1:ENST00000413987.1:ENST00000427469.5:ENST00000683442.1:ENST00000447507.1:ENST00000434290.6:ENST00000373833.10:ENST00000437681.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	107	1271	2	1.72203	2.102255	2.48248	6.39022e-4	1.59908e-5	0.0228666	0.00321152
chr3	180947065	180947165	1568954	0	+	0.52	(0.515,0.57]	chr3	162382	115	INTRON	INTRON	FXR1	ENSG00000114416.18	ENST00000469882.5:ENST00000484790.5:ENST00000465551.5:ENST00000305586.11:ENST00000475315.5:ENST00000357559.9:ENST00000468861.5:ENST00000491062.5:ENST00000479176.5:ENST00000445140.6:ENST00000472339.5:ENST00000484958.5:ENST00000480918.5:ENST00000484042.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	54	2	1.76853	2.10221	2.43589	0.0370871	0.0102412	0.139194	0.089002
chr8	55950158	55950258	3755044	0	+	0.32	(0.28,0.32]	chr8	349274	3	SS3_PROX	SS3_PROX:INTRON	LYN	ENSG00000254087.8	ENST00000519728.6:ENST00000520220.6:ENST00000520050.1	protein_coding	protein_coding	protein_coding	protein_coding	4	58	2	1.96376	2.102185	2.24061	0.0480066	0.0194267	0.153019	0.119831
chr16	57185544	57185639	6493104	0	-	0.631579	(0.57,1]	chr16	627988	1	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	PSME3IP1	ENSG00000172775.17	ENST00000309137.13:ENST00000566077.5:ENST00000567439.5:ENST00000564108.5:ENST00000562324.5:ENST00000567044.5:ENST00000565458.5:ENST00000562406.5:ENST00000566584.5:ENST00000568671.5:ENST00000565760.5:ENST00000566481.5:ENST00000570184.1:ENST00000566681.1:ENST00000565353.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	16	80	2	1.71815	2.102115	2.48608	0.00347794	3.96956e-4	0.0540844	0.0185763
chr11	65431160	65431260	4805854	0	+	0.33	(0.32,0.35]	chr11	446554	85	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	25	308	2	1.82178	2.1020849999999998	2.38239	0.00430041	1.00311e-4	0.0577542	0.00846222
chr7	152301468	152301568	3679937	0	-	0.41	(0.408,0.44]	chr7	341623	147	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000684262.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	88	2	1.69979	2.1020149999999997	2.50424	0.0310346	0.00101099	0.13151	0.0293364
chr9	97003678	97003778	4298890	0	-	0.58	(0.57,1]	chr9	395262	304	INTRON	INTRON	MFSD14C	ENSG00000196312.15	ENST00000647176.1:ENST00000645073.1:ENST00000637864.1:ENST00000652726.1:ENST00000637811.1:ENST00000650909.1	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript:transcribed_unprocessed_pseudogene	6	33	2	1.72406	2.101995	2.47993	0.0261443	0.007207	0.122221	0.0756278
chr16	48380126	48380226	6484009	0	-	0.5	(0.476,0.515]	chr16	627085	144	INTRON	INTRON	SIAH1	ENSG00000196470.12	ENST00000568007.5:ENST00000394725.3:ENST00000563745.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	47	2	1.8388	2.1019	2.365	0.0564473	0.0128901	0.184423	0.0926667
chr9	135949001	135949101	4372445	0	-	0.45	(0.44,0.476]	chr9	402541	7	INTRON	INTRON	UBAC1	ENSG00000130560.9	ENST00000371756.4:ENST00000478485.1:ENST00000486258.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	42	431	2	2.03244	2.10189	2.17134	5.07596e-4	7.98314e-5	0.020816	0.00743599
chr16	85567652	85567752	6415508	0	+	0.47	(0.44,0.476]	chr16	615470	109	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	67	702	2	2.07323	2.10183	2.13043	1.62782e-4	7.57893e-5	0.0116772	0.00730895
chr3	47642068	47642168	1683650	0	-	0.31	(0.28,0.32]	chr3	171996	29	INTRON	INTRON	SMARCC1	ENSG00000173473.11	ENST00000254480.10:ENST00000425518.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	97	2	1.78733	2.10179	2.41625	0.0276087	0.00419958	0.123904	0.0592209
chr8	226210	226310	3883290	0	-	0.44	(0.408,0.44]	chr8	357290	64	INTRON	INTRON	RPL23AP53	ENSG00000223508.5	ENST00000606975.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	5	57	2	1.6306	2.101775	2.57295	0.0544158	0.00640423	0.182272	0.0694534
chr1	20774805	20774905	389738	0	-	0.51	(0.476,0.515]	chr1	46560	13	UTR5	UTR5:EXON_MRNA:INTRON	HP1BP3	ENSG00000127483.19	ENST00000438032.6:ENST00000312239.10:ENST00000375003.6:ENST00000419948.5:ENST00000424732.5:ENST00000417710.5	protein_coding	protein_coding	protein_coding	protein_coding	64	652	2	2.03135	2.1017650000000003	2.17218	1.13941e-4	1.12117e-4	0.00960694	0.00903744
chr14	23085114	23085213	5842883	0	-	0.494949	(0.476,0.515]	chr14	555645	29	INTRON	INTRON	ACIN1	ENSG00000100813.15	ENST00000605057.6:ENST00000262710.5:ENST00000457657.5:ENST00000555053.5	protein_coding	protein_coding	protein_coding	protein_coding	3	34	2	2.06491	2.101725	2.13854	0.0776563	0.0304733	0.196285	0.143385
chr16	84737053	84737151	6410282	0	+	0.510204	(0.476,0.515]	chr16	615290	32	INTRON	INTRON	USP10	ENSG00000103194.16	ENST00000562743.5:ENST00000540269.6:ENST00000563892.5:ENST00000562092.1:ENST00000219473.12:ENST00000570191.5:ENST00000563048.5:ENST00000562283.5:ENST00000563386.5:ENST00000569038.5:ENST00000570053.1:ENST00000566512.1:ENST00000563023.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	34	2	2.06491	2.101725	2.13854	0.0776563	0.0304733	0.196285	0.143385
chr6	149758425	149758524	2996121	0	+	0.494949	(0.476,0.515]	chr6	280342	78	INTRON	INTRON	PCMT1	ENSG00000120265.19	ENST00000367384.7:ENST00000367378.6:ENST00000484601.6:ENST00000367380.9:ENST00000544496.5:ENST00000649295.1:ENST00000494411.6:ENST00000460828.6:ENST00000464889.7:ENST00000486585.2:ENST00000495487.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	34	2	2.06491	2.101725	2.13854	0.0776563	0.0304733	0.196285	0.143385
chr7	105328564	105328664	3603302	0	-	0.5	(0.476,0.515]	chr7	336161	216	INTRON	INTRON	SRPK2	ENSG00000135250.17	ENST00000393651.8:ENST00000482897.5:ENST00000460391.5:ENST00000462282.5:ENST00000465112.5:ENST00000482862.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	34	2	2.06491	2.101725	2.13854	0.0776563	0.0304733	0.196285	0.143385
chr8	60530452	60530552	3757935	0	+	0.51	(0.476,0.515]	chr8	349495	128	INTRON	INTRON	RAB2A	ENSG00000104388.15	ENST00000531289.5:ENST00000262646.12:ENST00000481569.1:ENST00000529579.5:ENST00000466595.5:ENST00000429861.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	34	2	2.06491	2.101725	2.13854	0.0776563	0.0304733	0.196285	0.143385
chr1	16334991	16335091	382445	0	-	0.39	(0.378,0.408]	chr1	44888	192	INTRON	INTRON	FBXO42	ENSG00000037637.11	ENST00000375592.8	protein_coding	protein_coding	protein_coding	protein_coding	8	64	2	1.2488	2.101695	2.95459	0.0562531	0.00957623	0.184145	0.0820838
chr2	171536240	171536340	917464	0	+	0.46	(0.44,0.476]	chr2	101030	126	INTRON	INTRON	CYBRD1	ENSG00000071967.12	ENST00000409484.5:ENST00000468308.1:ENST00000321348.9:ENST00000375252.3:ENST00000474182.1:ENST00000494587.1:ENST00000445146.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	55	2	1.55662	2.101655	2.64669	0.0688347	0.0040295	0.184298	0.0578376
chr19	5635928	5636027	7005425	0	+	0.353535	(0.35,0.378]	chr19	694957	91	INTRON	INTRON	SAFB	ENSG00000160633.13	ENST00000589863.5:ENST00000588852.2:ENST00000591666.5:ENST00000292123.9:ENST00000592224.5:ENST00000586934.5:ENST00000454510.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	98	2	1.53008	2.101625	2.67317	0.0530361	4.65906e-4	0.162198	0.0195589
chr9	131176303	131176401	4216151	0	+	0.44898	(0.44,0.476]	chr9	386623	8	EXON_MRNA	EXON_MRNA:INTRON	NUP214	ENSG00000126883.19	ENST00000695497.1:ENST00000695498.1:ENST00000695496.1:ENST00000695495.1:ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000525980.5:ENST00000526346.5:ENST00000531929.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	31	326	2	1.95653	2.1016150000000002	2.2467	6.21407e-4	2.19137e-4	0.0223951	0.0135522
chr7	105118919	105119018	3601178	0	-	0.373737	(0.35,0.378]	chr7	336054	5	INTRON	INTRON	SRPK2	ENSG00000135250.17	ENST00000465072.5:ENST00000393651.8:ENST00000357311.7:ENST00000466917.1:ENST00000485455.1:ENST00000477925.5:ENST00000489828.5:ENST00000474770.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	60	2	1.33846	2.1014850000000003	2.86451	0.0687435	0.0109111	0.184298	0.0923273
chr17	32358741	32358841	6598067	0	+	0.47	(0.44,0.476]	chr17	641898	1	SS5_PROX	SS5_PROX:INTRON	ZNF207	ENSG00000010244.19	ENST00000321233.10:ENST00000394673.6:ENST00000394670.9:ENST00000579634.5:ENST00000580759.5:ENST00000342555.10:ENST00000577908.5:ENST00000394679.9:ENST00000582165.1:ENST00000577324.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	55	2	1.81283	2.1014299999999997	2.39003	0.0343005	0.0106488	0.135641	0.0915714
chr1	28907077	28907177	58880	0	+	0.52	(0.515,0.57]	chr1	7617	129	INTRON	INTRON	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000647918.1:ENST00000646800.1:ENST00000644342.1:ENST00000646189.1:ENST00000482464.6:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000646260.1:ENST00000373798.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	35	2	1.67758	2.1013100000000002	2.52504	0.0471728	0.029342	0.168737	0.128055
chr17	57471394	57471494	6634910	0	+	0.55	(0.515,0.57]	chr17	648057	263	INTRON	INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000674961.1:ENST00000582453.5:ENST00000675656.1:ENST00000322684.7:ENST00000442934.6:ENST00000579180.2:ENST00000579205.5:ENST00000579505.5:ENST00000582772.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	35	2	1.67758	2.1013100000000002	2.52504	0.0471728	0.029342	0.168737	0.128055
chr22	49582754	49582854	7601907	0	-	0.53	(0.515,0.57]	chr22	778566	1412	INTRON	INTRON	MIR3667HG	ENSG00000188511.13	ENST00000414287.5:ENST00000416411.1	lncRNA	lncRNA	lncRNA	lncRNA	4	35	2	1.67758	2.1013100000000002	2.52504	0.0471728	0.029342	0.168737	0.128055
chr3	194490969	194491069	1891244	0	-	0.52	(0.515,0.57]	chr3	189256	41	INTRON	INTRON	ATP13A3	ENSG00000133657.17	ENST00000687055.1	protein_coding	processed_transcript	protein_coding	processed_transcript	4	35	2	1.67758	2.1013100000000002	2.52504	0.0471728	0.029342	0.168737	0.128055
chr4	32034998	32035098	1941798	0	+	0.32	(0.28,0.32]	chr4	194727	368	INTRON	INTRON	LINC02506	ENSG00000251129.3	ENST00000662669.1:ENST00000665582.2:ENST00000667252.2:ENST00000660373.2:ENST00000684849.1:ENST00000513211.2:ENST00000659613.1:ENST00000657576.1:ENST00000686730.1:ENST00000685407.1:ENST00000685455.1:ENST00000655951.1	lncRNA	lncRNA	lncRNA	lncRNA	5	71	2	1.76378	2.1012399999999998	2.4387	0.0395495	0.0126802	0.161534	0.0926667
chr19	15309441	15309541	7147175	0	-	0.4	(0.378,0.408]	chr19	721965	291	INTRON	INTRON	BRD4	ENSG00000141867.19	ENST00000679869.1:ENST00000360016.9:ENST00000594841.5:ENST00000597315.5:ENST00000601941.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	88	2	2.06535	2.10123	2.13711	0.0159849	0.00329758	0.101453	0.0527031
chr3	177192066	177192166	1872395	0	-	0.49	(0.476,0.515]	chr3	187438	208	INTRON	INTRON	TBL1XR1	ENSG00000177565.18	ENST00000457928.7:ENST00000430069.5:ENST00000673974.1:ENST00000352800.10:ENST00000422442.6:ENST00000428970.5:ENST00000424913.5:ENST00000437738.5:ENST00000431421.5:ENST00000635794.1:ENST00000630796.2:ENST00000450267.5:ENST00000630833.2:ENST00000431674.5:ENST00000422066.5:ENST00000443315.5:ENST00000627825.2:ENST00000427349.5:ENST00000413084.5:ENST00000637137.1:ENST00000491623.2:ENST00000637544.1:ENST00000636187.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	9	91	2	1.69758	2.10123	2.50488	0.0144542	0.00285353	0.105087	0.0474836
chr9	94384311	94384410	4162261	0	+	0.444444	(0.44,0.476]	chr9	379485	90	INTRON	INTRON	MFSD14B	ENSG00000148110.17	ENST00000375344.8	protein_coding	protein_coding	protein_coding	protein_coding	8	78	2	1.50943	2.1012	2.69297	0.0316416	0.00333494	0.13151	0.0528877
chr3	48075580	48075680	1687367	0	-	0.34	(0.32,0.35]	chr3	172280	593	INTRON	INTRON	MAP4	ENSG00000047849.22	ENST00000395734.7:ENST00000426837.6:ENST00000360240.10:ENST00000423088.5:ENST00000439356.2:ENST00000468075.2	protein_coding	protein_coding	protein_coding	protein_coding	5	64	2	2.02133	2.1011249999999997	2.18092	0.0256608	0.017146	0.120491	0.111072
chr16	22440334	22440433	6321970	0	+	0.525253	(0.515,0.57]	chr16	605299	22	INTRON	INTRON	SMG1P1	ENSG00000237296.10	ENST00000446662.5:ENST00000381231.5:ENST00000309865.11:ENST00000691795.1:ENST00000308347.10:ENST00000687936.1:ENST00000691423.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	5	47	2	1.81744	2.1010999999999997	2.38476	0.031028	0.0110593	0.143457	0.0873897
chr10	101809983	101810083	4680890	0	-	0.43	(0.408,0.44]	chr10	432007	4	SS5_PROX	SS5_PROX:INTRON	OGA	ENSG00000198408.14	ENST00000439817.5:ENST00000361464.8:ENST00000357797.9:ENST00000370094.7:ENST00000429860.1	protein_coding	protein_coding	protein_coding	protein_coding	10	110	2	1.60905	2.10107	2.59309	0.02971	3.10676e-4	0.129022	0.0158045
chr5	115616208	115616308	2707617	0	-	0.4	(0.378,0.408]	chr5	254779	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	TMED7-TICAM2:TMED7	ENSG00000251201.8:ENSG00000134970.14	ENST00000282382.8:ENST00000333314.3:ENST00000514548.1:ENST00000456936.4:ENST00000503010.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	43	2	1.89251	2.10106	2.30961	0.055088	0.0251428	0.165463	0.133404
chr1	32197786	32197886	64349	0	+	0.43	(0.408,0.44]	chr1	8208	27	UTR3	UTR3:EXON_MRNA	TXLNA	ENSG00000084652.16	ENST00000373610.8:ENST00000373609.1	protein_coding	protein_coding	protein_coding	protein_coding	18	185	2	1.94186	2.10092	2.25998	0.00141395	0.001078	0.0345699	0.030243
chr11	68047332	68047432	4815724	0	+	0.67	(0.57,1]	chr11	448692	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TCIRG1	ENSG00000110719.10	ENST00000265686.8:ENST00000532635.5:ENST00000529364.1:ENST00000525724.5:ENST00000528981.5:ENST00000533005.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	23	2	1.83769	2.1009	2.36411	0.0408868	0.0297587	0.161534	0.12908
chr9	129636594	129636693	4360079	0	-	0.575758	(0.57,1]	chr9	400851	21	UTR3	UTR3:EXON_MRNA	ASB6	ENSG00000148331.12	ENST00000450050.6:ENST00000277458.5	protein_coding	protein_coding	protein_coding	protein_coding	4	23	2	1.83769	2.1009	2.36411	0.0408868	0.0297587	0.161534	0.12908
chr4	39949746	39949846	2131923	0	-	0.49	(0.476,0.515]	chr4	210242	212	INTRON	INTRON	PDS5A	ENSG00000121892.15	ENST00000303538.13:ENST00000503396.5	protein_coding	protein_coding	protein_coding	protein_coding	4	42	2	1.96833	2.10084	2.23335	0.0634557	0.0195007	0.177047	0.119967
chr1	9614279	9614378	17866	0	+	0.434343	(0.408,0.44]	chr1	1678	13	UTR3	UTR3:EXON_MRNA	TMEM201	ENSG00000188807.13	ENST00000340381.11:ENST00000416541.5	protein_coding	protein_coding	protein_coding	protein_coding	5	55	2	1.9831	2.100835	2.21857	0.0209591	0.018491	0.116694	0.112046
chr6	34853119	34853219	2849014	0	+	0.42	(0.408,0.44]	chr6	269159	164	INTRON	INTRON	UHRF1BP1	ENSG00000065060.18	ENST00000192788.6	protein_coding	protein_coding	protein_coding	protein_coding	5	55	2	1.9831	2.100835	2.21857	0.0209591	0.018491	0.116694	0.112046
chr4	78852744	78852843	1982157	0	+	0.464646	(0.44,0.476]	chr4	198504	13	INTRON	INTRON	BMP2K	ENSG00000138756.19	ENST00000389010.7:ENST00000502613.3:ENST00000502871.5:ENST00000505725.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	93	2	1.42119	2.100825	2.78046	0.0224591	0.0028389	0.124921	0.0473151
chr12	132815846	132815942	5450089	0	-	0.552083	(0.515,0.57]	chr12	522096	21	INTRON	INTRON	GOLGA3	ENSG00000090615.16	ENST00000204726.9:ENST00000450791.8:ENST00000688114.1:ENST00000685283.1:ENST00000691696.1:ENST00000691636.1:ENST00000690897.1:ENST00000456883.7:ENST00000545875.4:ENST00000688251.1:ENST00000692951.1:ENST00000686751.1:ENST00000685580.1:ENST00000687165.1:ENST00000692384.1:ENST00000685120.1:ENST00000689813.1:ENST00000693112.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	49	2	1.79136	2.10079	2.41022	0.0638444	0.00332441	0.177811	0.0528673
chr18	2657960	2658060	6864882	0	+	0.55	(0.515,0.57]	chr18	679940	13	INTRON	INTRON	SMCHD1	ENSG00000101596.17	ENST00000320876.11:ENST00000688342.1:ENST00000684915.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	14	114	2	1.60404	2.100745	2.59745	0.00824724	6.62645e-4	0.0813266	0.0234815
chr3	128743746	128743846	1497386	0	+	0.38	(0.378,0.408]	chr3	156330	170	INTRON	INTRON	RAB7A	ENSG00000075785.14	ENST00000676214.1:ENST00000675864.1:ENST00000675712.1:ENST00000676425.1:ENST00000490093.6:ENST00000675342.1:ENST00000265062.8:ENST00000674748.1:ENST00000493186.6:ENST00000482525.5:ENST00000491681.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	143	2	1.9089	2.10068	2.29246	0.00763296	6.32391e-4	0.0752119	0.0227221
chr4	55401542	55401641	1960645	0	+	0.242424	[0,0.28]	chr4	196546	19	INTRON	INTRON	TMEM165	ENSG00000134851.13	ENST00000381334.10:ENST00000506198.5:ENST00000508404.5:ENST00000511710.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	135	2	1.8602	2.10066	2.34112	0.0100208	0.0089545	0.0880342	0.0800073
chr8	105358277	105358377	3837638	0	+	0.49	(0.476,0.515]	chr8	354033	382	INTRON	INTRON	ZFPM2	ENSG00000169946.14	ENST00000518180.1:ENST00000407775.7:ENST00000520492.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	52	2	1.43644	2.10052	2.7646	0.047372	0.0162075	0.169265	0.101453
chr15	20502214	20502313	6118905	0	-	0.363636	(0.35,0.378]	chr15	582487	1	INTRON	INTRON	HERC2P3	ENSG00000180229.12	ENST00000428453.5:ENST00000437318.5:ENST00000430598.5:ENST00000429257.5:ENST00000414804.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	5	60	2	2.04224	2.100505	2.15877	0.0363073	0.0102036	0.138959	0.089002
chr7	73456256	73456355	3554424	0	-	0.373737	(0.35,0.378]	chr7	330741	49	INTRON	INTRON	BAZ1B	ENSG00000009954.11	ENST00000339594.9:ENST00000404251.1	protein_coding	protein_coding	protein_coding	protein_coding	5	60	2	2.04224	2.100505	2.15877	0.0363073	0.0102036	0.138959	0.089002
chr20	49686887	49686987	7353358	0	-	0.36	(0.35,0.378]	chr20	749846	298	INTRON	INTRON	B4GALT5	ENSG00000158470.5	ENST00000371711.4	protein_coding	protein_coding	protein_coding	protein_coding	6	57	2	1.47599	2.10048	2.72497	0.0425671	0.0198266	0.162011	0.109608
chr1	168008189	168008289	249214	0	+	0.53	(0.515,0.57]	chr1	29602	30	INTRON	INTRON	DCAF6	ENSG00000143164.16	ENST00000432587.6:ENST00000367843.7:ENST00000470721.5:ENST00000367840.4:ENST00000312263.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	29	2	1.86007	2.1004699999999996	2.34087	0.0526611	0.0469761	0.178401	0.151917
chr16	343449	343549	6426764	0	-	0.52	(0.515,0.57]	chr16	617500	284	INTRON	INTRON	AXIN1	ENSG00000103126.15	ENST00000262320.8:ENST00000461023.5:ENST00000354866.7:ENST00000481769.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	29	2	1.86007	2.1004699999999996	2.34087	0.0526611	0.0469761	0.178401	0.151917
chr19	12542136	12542236	7139864	0	-	0.52	(0.515,0.57]	chr19	720335	2	INTRON	INTRON	ZNF564	ENSG00000249709.8	ENST00000339282.12:ENST00000427105.1:ENST00000596193.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	29	2	1.86007	2.1004699999999996	2.34087	0.0526611	0.0469761	0.178401	0.151917
chr2	238452052	238452151	1052821	0	+	0.555556	(0.515,0.57]	chr2	112004	57	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ASB1	ENSG00000065802.12	ENST00000264607.9:ENST00000481566.1:ENST00000473306.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	29	2	1.86007	2.1004699999999996	2.34087	0.0526611	0.0469761	0.178401	0.151917
chr16	85585334	85585434	6415685	0	+	0.58	(0.57,1]	chr16	615470	286	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	10	54	2	1.64944	2.10039	2.55134	0.016446	6.11018e-4	0.102201	0.0223951
chr1	1574557	1574633	360320	0	-	0.710526	(0.57,1]	chr1	41857	1	UTR5	UTR5:EXON_MRNA	SSU72	ENSG00000160075.12	ENST00000291386.4:ENST00000378725.3:ENST00000359060.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	54	2	1.85921	2.1002799999999997	2.34135	0.00662994	0.00191867	0.0703181	0.0405205
chr15	44556029	44556125	6015579	0	+	0.489583	(0.476,0.515]	chr15	573024	10	INTRON	INTRON	EIF3J	ENSG00000104131.13	ENST00000424492.7:ENST00000261868.10:ENST00000535391.5:ENST00000558053.1:ENST00000536248.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	50	2	1.63187	2.100275	2.56868	0.037661	0.0256676	0.14058	0.133676
chr16	8854100	8854196	6441828	0	-	0.375	(0.35,0.378]	chr16	620374	13	UTR3	UTR3:EXON_MRNA	CARHSP1	ENSG00000153048.11	ENST00000396593.6:ENST00000611932.4:ENST00000618335.4:ENST00000619881.4:ENST00000610831.4:ENST00000614449.4:ENST00000311052.10	protein_coding	protein_coding	protein_coding	protein_coding	5	60	2	1.87586	2.10025	2.32464	0.0268864	0.0159285	0.135275	0.101453
chr12	79923203	79923303	5376416	0	-	0.45	(0.44,0.476]	chr12	512797	94	INTRON	INTRON	PPP1R12A	ENSG00000058272.19	ENST00000261207.9:ENST00000450142.7:ENST00000437004.6:ENST00000550107.5:ENST00000547330.5:ENST00000550510.5	protein_coding	protein_coding	protein_coding	protein_coding	9	92	2	1.60853	2.10019	2.59185	0.020211	0.00200767	0.121301	0.0408395
chr7	101827472	101827572	3366463	0	+	0.43	(0.408,0.44]	chr7	315215	81	INTRON	INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000497815.5:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000607092.1:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000558469.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	47	2	1.93243	2.100175	2.26792	0.0441194	0.0179973	0.162255	0.106756
chr19	11126913	11127012	7017213	0	+	0.393939	(0.378,0.408]	chr19	697502	32	INTRON	INTRON	LDLR	ENSG00000130164.14	ENST00000557933.5:ENST00000558518.6:ENST00000545707.5:ENST00000535915.5:ENST00000455727.6:ENST00000558013.5:ENST00000252444.9	protein_coding	protein_coding	protein_coding	protein_coding	14	153	2	1.92997	2.100145	2.27032	0.00301953	0.00157451	0.0507747	0.0361957
chr13	50042936	50043035	5594194	0	-	0.363636	(0.35,0.378]	chr13	534686	109	INTRON	INTRON	DLEU2	ENSG00000231607.14	ENST00000621282.4:ENST00000688690.1:ENST00000668305.1:ENST00000425586.5:ENST00000686946.1	lncRNA	lncRNA	lncRNA	lncRNA	8	92	2	1.81752	2.1001250000000002	2.38273	0.0130467	0.00534773	0.0994973	0.0642565
chr19	55405168	55405264	7214060	0	-	0.489583	(0.476,0.515]	chr19	732866	3	INTRON	INTRON	UBE2S	ENSG00000108106.14	ENST00000264552.14:ENST00000587845.5:ENST00000589978.1	protein_coding	protein_coding	protein_coding	protein_coding	7	81	2	1.86014	2.1000199999999998	2.3399	0.0277606	0.00275491	0.137011	0.0469265
chr17	82473396	82473496	6692415	0	+	0.54	(0.515,0.57]	chr17	654573	3	INTRON	INTRON	NARF	ENSG00000141562.19	ENST00000390006.8:ENST00000345415.11:ENST00000581202.5:ENST00000374611.9:ENST00000457415.7:ENST00000581795.5:ENST00000577812.5:ENST00000581743.5:ENST00000577432.5:ENST00000582907.5:ENST00000309794.16:ENST00000578082.5:ENST00000577410.2:ENST00000579083.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	73	2	1.33814	2.09999	2.86184	0.063703	3.55958e-4	0.177689	0.0168968
chr2	15531043	15531143	1072859	0	-	0.31	(0.28,0.32]	chr2	114441	193	INTRON	INTRON	NBAS	ENSG00000151779.13	ENST00000281513.10	protein_coding	protein_coding	protein_coding	protein_coding	5	70	2	2.05458	2.0999600000000003	2.14534	0.0381508	0.0117054	0.141764	0.0962115
chr11	62597118	62597215	4959843	0	-	0.484536	(0.476,0.515]	chr11	466359	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MTA2	ENSG00000149480.7	ENST00000278823.7:ENST00000524902.5:ENST00000527204.5:ENST00000531261.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	55	2	1.99197	2.09993	2.20789	0.039572	0.00820497	0.143072	0.081115
chr3	198206470	198206569	1600228	0	+	0.313131	(0.28,0.32]	chr3	165898	71	INTRON	INTRON	FAM157A	ENSG00000236438.7	ENST00000634862.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	5	70	2	1.90249	2.099785	2.29708	0.0261803	0.0195087	0.133676	0.109483
chr6	157914390	157914489	3016687	0	+	0.282828	(0.28,0.32]	chr6	281411	40	INTRON	INTRON	SNX9	ENSG00000130340.17	ENST00000680863.1:ENST00000679814.1:ENST00000680464.1:ENST00000681186.1:ENST00000679732.1:ENST00000681183.1:ENST00000681534.1:ENST00000681651.1:ENST00000680089.1:ENST00000680078.1:ENST00000680974.1:ENST00000680095.1:ENST00000681138.1:ENST00000392185.8:ENST00000679790.1:ENST00000680495.1:ENST00000679691.1:ENST00000681881.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	70	2	1.64432	2.099765	2.55521	0.0606133	0.0067419	0.171142	0.0739405
chr17	57996143	57996242	6799938	0	-	0.444444	(0.44,0.476]	chr17	671423	14	INTRON	INTRON	ENSG00000266086	ENSG00000266086.3	ENST00000578794.2:ENST00000665125.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	15	157	2	1.99961	2.09974	2.19987	0.0036117	7.15015e-4	0.0533855	0.0244034
chr2	188243631	188243731	1294957	0	-	0.38	(0.378,0.408]	chr2	135671	147	INTRON	INTRON	LINC01090	ENSG00000231689.3	ENST00000434418.2:ENST00000632331.1:ENST00000415357.1	lncRNA	lncRNA	lncRNA	lncRNA	6	65	2	1.80483	2.099635	2.39444	0.0201276	0.0122858	0.121243	0.091087
chr16	85555866	85555966	6415389	0	+	0.57	(0.515,0.57]	chr16	615465	1966	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	46	401	2	1.8635	2.099625	2.33575	3.67804e-4	3.89454e-5	0.0172292	0.00533644
chr3	186969293	186969392	1586564	0	+	0.515152	(0.476,0.515]	chr3	164332	50	INTRON	INTRON	ST6GAL1	ENSG00000073849.16	ENST00000676786.1:ENST00000169298.8:ENST00000457772.6:ENST00000455441.5:ENST00000427315.5:ENST00000677292.1:ENST00000458216.5:ENST00000430309.5:ENST00000417392.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	55	2	1.74317	2.0995749999999997	2.45598	0.0396373	0.00945755	0.161534	0.0817766
chr17	82819623	82819722	6694890	0	+	0.545455	(0.515,0.57]	chr17	654903	43	INTRON	INTRON	TBCD	ENSG00000141556.22	ENST00000682479.1:ENST00000682722.1:ENST00000684464.1:ENST00000684544.1:ENST00000681983.1:ENST00000684361.1:ENST00000683184.1:ENST00000683282.1:ENST00000684408.1:ENST00000355528.9:ENST00000683444.1:ENST00000684776.1:ENST00000683041.1:ENST00000684760.1:ENST00000684349.1:ENST00000682213.1:ENST00000683009.1:ENST00000682921.1:ENST00000539345.6:ENST00000684000.1:ENST00000684188.1:ENST00000684429.1:ENST00000682610.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	39	2	1.8707	2.09953	2.32836	0.0523213	0.0126662	0.160182	0.0982897
chr1	225868627	225868724	646088	0	-	0.391753	(0.378,0.408]	chr1	76514	2	INTRON	INTRON	TMEM63A	ENSG00000196187.12	ENST00000366835.8	protein_coding	protein_coding	protein_coding	protein_coding	7	79	2	1.88716	2.099485	2.31181	0.017192	0.00548372	0.104099	0.0671431
chr1	29061383	29061483	60443	0	+	0.5	(0.476,0.515]	chr1	7726	5	INTRON	INTRON	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000647918.1:ENST00000646800.1:ENST00000644342.1:ENST00000646189.1:ENST00000482464.6:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000646260.1:ENST00000373798.5:ENST00000644600.1:ENST00000649674.1:ENST00000643173.1:ENST00000343067.9:ENST00000644780.1:ENST00000650265.1:ENST00000648181.1:ENST00000643604.1:ENST00000648891.1:ENST00000373797.2:ENST00000349460.9:ENST00000645184.1:ENST00000645111.1:ENST00000643302.1:ENST00000642643.1:ENST00000636666.1:ENST00000644848.1:ENST00000644470.1:ENST00000646871.1:ENST00000488277.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	86	2	1.82595	2.09945	2.37295	0.0202339	0.00193884	0.109955	0.0409025
chr3	50007112	50007212	1423631	0	+	0.36	(0.35,0.378]	chr3	149994	72	INTRON	INTRON	RBM6	ENSG00000004534.15	ENST00000442092.5:ENST00000443081.5:ENST00000419610.5:ENST00000441115.5:ENST00000422955.5:ENST00000454079.5:ENST00000266022.9:ENST00000425608.5:ENST00000434592.5:ENST00000464013.5:ENST00000483350.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	72	2	1.91706	2.09944	2.28182	0.026412	0.00637232	0.122506	0.0724821
chr7	148824258	148824358	3670152	0	-	0.37	(0.35,0.378]	chr7	340580	35	INTRON	INTRON	EZH2	ENSG00000106462.12	ENST00000683292.1:ENST00000320356.7:ENST00000492143.5:ENST00000478654.5:ENST00000350995.6:ENST00000460911.5:ENST00000683744.1:ENST00000682317.1:ENST00000682263.1:ENST00000684300.1:ENST00000476773.5:ENST00000483967.5:ENST00000498186.5:ENST00000483012.1:ENST00000682401.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	49	536	2	2.02381	2.099435	2.17506	3.427e-4	1.70962e-4	0.017199	0.0113605
chr7	102846413	102846512	3590082	0	-	0.444444	(0.44,0.476]	chr7	335153	131	INTRON	INTRON	FBXL13	ENSG00000161040.18	ENST00000694871.1:ENST00000694870.1:ENST00000448002.6:ENST00000379305.7:ENST00000440067.3:ENST00000456695.6:ENST00000313221.8:ENST00000436908.5:ENST00000455112.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	63	2	2.00793	2.099355	2.19078	0.0226089	0.00937685	0.117489	0.0859966
chr14	58277622	58277721	5904536	0	-	0.333333	(0.32,0.35]	chr14	560819	31	INTRON	INTRON	PSMA3-AS1	ENSG00000257621.9	ENST00000554360.5:ENST00000556002.5:ENST00000555275.5:ENST00000554378.5:ENST00000555707.5:ENST00000556400.5:ENST00000557660.5:ENST00000553657.5	lncRNA	lncRNA	lncRNA	lncRNA	4	54	2	2.01768	2.0993	2.18092	0.0361337	0.0256608	0.152563	0.120491
chr7	103085541	103085639	3372950	0	+	0.295918	(0.28,0.32]	chr7	315662	11	INTRON	INTRON	ARMC10	ENSG00000170632.14	ENST00000441711.6:ENST00000454559.5:ENST00000428183.6:ENST00000541300.5:ENST00000425331.5:ENST00000323735.10:ENST00000306450.5:ENST00000323716.8:ENST00000434153.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	98	2	1.9455	2.09924	2.25298	0.016777	0.00791652	0.103294	0.0797304
chr12	26984393	26984492	5298883	0	-	0.363636	(0.35,0.378]	chr12	504110	4	INTRON	INTRON	TM7SF3	ENSG00000064115.11	ENST00000343028.9:ENST00000545344.5:ENST00000545303.5:ENST00000535260.5:ENST00000543882.5:ENST00000542667.5:ENST00000535819.1:ENST00000543655.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	51	2	1.59505	2.09923	2.60341	0.040425	0.0275785	0.161534	0.123904
chr19	28470880	28470980	7165803	0	-	0.44	(0.408,0.44]	chr19	724189	26	INTRON	INTRON	ENSG00000283403:ENSG00000267243	ENSG00000283403.1:ENSG00000267243.6	ENST00000592347.5:ENST00000593065.5	lncRNA	lncRNA	lncRNA	lncRNA	4	42	2	1.53263	2.09921	2.66579	0.0733439	0.019342	0.190051	0.119831
chr2	61409207	61409306	1129936	0	-	0.444444	(0.44,0.476]	chr2	121491	27	INTRON	INTRON	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000453133.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	57	2	1.33609	2.0991999999999997	2.86231	0.0510862	0.012214	0.176696	0.0910127
chr15	94904239	94904339	6105675	0	+	0.49	(0.476,0.515]	chr15	581677	4	SS3_PROX	SS3_PROX:INTRON	ENSG00000277654	ENSG00000277654.6	ENST00000618611.4:ENST00000648065.1:ENST00000618377.1:ENST00000621842.4:ENST00000615751.4:ENST00000614581.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	5	56	2	1.61586	2.099195	2.58253	0.0567093	0.00600101	0.185107	0.0674604
chr1	31928344	31928444	414335	0	-	0.36	(0.35,0.378]	chr1	49920	38	INTRON	INTRON	PTP4A2	ENSG00000184007.22	ENST00000647444.2:ENST00000649841.1:ENST00000468531.1:ENST00000534796.5:ENST00000532289.1:ENST00000526960.1:ENST00000524384.5:ENST00000528840.1:ENST00000494444.2:ENST00000529477.5:ENST00000533408.1:ENST00000475464.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	83	2	1.56881	2.099155	2.6295	0.047622	0.00142732	0.153019	0.0347139
chr7	152648343	152648442	3681340	0	-	0.454545	(0.44,0.476]	chr7	341672	37	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	XRCC2	ENSG00000196584.3	ENST00000359321.2:ENST00000495707.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	22	215	2	1.69408	2.0991150000000003	2.50415	0.00384401	2.88586e-4	0.0542786	0.0150743
chr6	20431222	20431322	2827741	0	+	0.42	(0.408,0.44]	chr6	265575	270	INTRON	INTRON	E2F3	ENSG00000112242.16	ENST00000346618.8:ENST00000535432.2	protein_coding	protein_coding	protein_coding	protein_coding	5	55	2	2.08376	2.099115	2.11447	0.0285207	0.0129886	0.12666	0.0991656
chr3	172156664	172156764	1560721	0	+	0.35	(0.32,0.35]	chr3	161551	77	INTRON	INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000421757.5:ENST00000469491.5:ENST00000336824.8:ENST00000423424.5:ENST00000416957.5:ENST00000478016.1:ENST00000443501.1:ENST00000476794.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	90	2	1.77469	2.0991049999999998	2.42352	0.0122807	0.0115283	0.0960498	0.091087
chr7	149486025	149486124	3671716	0	-	0.383838	(0.378,0.408]	chr7	340777	79	INTRON	INTRON	ZNF746	ENSG00000181220.18	ENST00000644635.1:ENST00000340622.8:ENST00000458143.7:ENST00000685153.1	protein_coding	protein_coding	protein_coding	protein_coding	11	122	2	1.9515	2.0991	2.2467	0.00641948	0.00196896	0.0695904	0.0411469
chr10	117359675	117359775	4702550	0	-	0.42	(0.408,0.44]	chr10	433752	182	INTRON	INTRON	PDZD8	ENSG00000165650.12	ENST00000334464.7:ENST00000489491.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	70	2	1.74813	2.09908	2.45003	0.0163902	0.00990006	0.109715	0.0838372
chr12	106779212	106779312	5217377	0	+	0.46	(0.44,0.476]	chr12	493830	34	INTRON	INTRON	RIC8B	ENSG00000111785.21	ENST00000550215.5:ENST00000392839.6:ENST00000548914.5:ENST00000355478.6:ENST00000392837.9:ENST00000549643.5:ENST00000552619.1:ENST00000462949.5:ENST00000470628.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	35	2	1.9039	2.099075	2.29425	0.0518406	0.0501498	0.176696	0.156383
chr16	31121490	31121583	6340441	0	+	0.44086	(0.44,0.476]	chr16	608276	5	INTRON	INTRON	KAT8	ENSG00000103510.20	ENST00000543774.6:ENST00000219797.9:ENST00000448516.6	protein_coding	protein_coding	protein_coding	protein_coding	3	35	2	1.9039	2.099075	2.29425	0.0518406	0.0501498	0.176696	0.156383
chr9	4817661	4817761	4095113	0	+	0.46	(0.44,0.476]	chr9	373155	241	INTRON	INTRON	RCL1	ENSG00000120158.12	ENST00000381750.9:ENST00000381732.3:ENST00000442869.5:ENST00000473230.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	41	2	1.81595	2.09907	2.38219	0.045456	0.0317953	0.149888	0.14477
chr11	67297201	67297300	4814186	0	+	0.535354	(0.515,0.57]	chr11	448332	47	INTRON	INTRON	ANKRD13D	ENSG00000172932.16	ENST00000511455.7:ENST00000308440.11:ENST00000447274.7:ENST00000506531.5:ENST00000504186.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	61	2	1.68236	2.098985	2.51561	0.0211981	0.00635044	0.113017	0.0723103
chr21	6326766	6326866	7364841	0	+	0.38	(0.378,0.408]	chr21	751664	23	INTRON	INTRON	ENSG00000278903	ENSG00000278903.4	ENST00000688458.1:ENST00000689306.1:ENST00000692898.1:ENST00000624576.3:ENST00000623738.3:ENST00000692237.1:ENST00000692046.1:ENST00000689354.1:ENST00000624165.1	lncRNA	lncRNA	lncRNA	lncRNA	5	58	2	1.72045	2.098985	2.47752	0.0424671	0.0092831	0.161763	0.0817766
chr1	222733011	222733111	320119	0	+	0.28	[0,0.28]	chr1	36843	4	UTR3	UTR3:EXON_MRNA	BROX	ENSG00000162819.12	ENST00000612948.4:ENST00000340934.10:ENST00000537020.5:ENST00000539697.5	protein_coding	protein_coding	protein_coding	protein_coding	10	155	2	1.62418	2.09896	2.57374	0.0298451	0.00121496	0.129138	0.0322637
chr1	180729484	180729584	270571	0	+	0.36	(0.35,0.378]	chr1	31620	467	INTRON	INTRON	XPR1	ENSG00000143324.14	ENST00000367590.9:ENST00000367589.3	protein_coding	protein_coding	protein_coding	protein_coding	5	60	2	1.75081	2.09891	2.44701	0.0427459	0.00900997	0.148082	0.0851009
chr16	28170309	28170409	6468043	0	-	0.3	(0.28,0.32]	chr16	624571	4	SS3_PROX	SS3_PROX:INTRON	XPO6	ENSG00000169180.12	ENST00000304658.10:ENST00000565698.5:ENST00000573645.1:ENST00000570033.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	72	2	1.27925	2.09888	2.91851	0.0642509	0.0130672	0.19963	0.093385
chr19	34449073	34449172	7053334	0	+	0.50505	(0.476,0.515]	chr19	703531	36	INTRON	INTRON	UBA2	ENSG00000126261.13	ENST00000586313.1:ENST00000590048.6:ENST00000246548.9:ENST00000439527.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	111	2	1.35157	2.098825	2.84608	0.0293212	6.05245e-4	0.141981	0.0226059
chr7	12380066	12380145	3485195	0	-	0.405063	(0.378,0.408]	chr7	325942	1	SS5_PROX	SS5_PROX:INTRON	VWDE	ENSG00000146530.15	ENST00000275358.8:ENST00000452576.6:ENST00000521169.5:ENST00000326715.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	18	187	2	1.60313	2.098815	2.5945	0.00918	1.78012e-4	0.0814343	0.0116383
chr1	100383840	100383940	172941	0	+	0.29	(0.28,0.32]	chr1	18816	2	SS5_PROX	SS5_PROX:INTRON	CDC14A	ENSG00000079335.20	ENST00000646665.1:ENST00000644844.1:ENST00000635056.2:ENST00000647005.1:ENST00000647203.1:ENST00000644676.1:ENST00000361544.11:ENST00000370124.8:ENST00000336454.5:ENST00000646583.1:ENST00000644813.1:ENST00000455467.6:ENST00000646563.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	59	2	1.51776	2.0987549999999997	2.67975	0.0528371	0.0252505	0.178899	0.12011
chr10	11947368	11947468	4556811	0	-	0.31	(0.28,0.32]	chr10	420540	38	INTRON	INTRON	UPF2	ENSG00000151461.20	ENST00000357604.10:ENST00000356352.6:ENST00000397053.6	protein_coding	protein_coding	protein_coding	protein_coding	5	59	2	1.51776	2.0987549999999997	2.67975	0.0528371	0.0252505	0.178899	0.12011
chr2	108603478	108603578	846543	0	+	0.4	(0.378,0.408]	chr2	94686	85	INTRON	INTRON	LIMS1	ENSG00000169756.17	ENST00000695516.1:ENST00000544547.6:ENST00000695517.1:ENST00000695518.1:ENST00000695519.1:ENST00000332345.10:ENST00000695520.1:ENST00000393310.5:ENST00000695521.1	protein_coding	protein_coding	protein_coding	protein_coding	6	71	2	1.89251	2.09875	2.30499	0.0251428	0.00683258	0.133404	0.0713163
chrX	111693762	111693862	7702144	0	+	0.35	(0.32,0.35]	chrX	788221	37	INTRON	INTRON	ALG13	ENSG00000101901.12	ENST00000487141.5:ENST00000394780.8:ENST00000251943.8:ENST00000610588.4:ENST00000621367.4:ENST00000622997.3:ENST00000624161.3:ENST00000636363.1:ENST00000624881.3:ENST00000495283.5:ENST00000486353.5:ENST00000623144.3:ENST00000470971.5:ENST00000623148.3:ENST00000471924.5:ENST00000436609.5:ENST00000470704.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	87	2	1.99307	2.098725	2.20438	0.04271	0.00271026	0.148082	0.0480766
chr2	55009686	55009786	1120996	0	-	0.33	(0.32,0.35]	chr2	120143	2	SS5_PROX	SS5_PROX:INTRON	RTN4	ENSG00000115310.19	ENST00000394609.6:ENST00000404909.5:ENST00000394611.6:ENST00000317610.11:ENST00000357732.8:ENST00000337526.11:ENST00000357376.7:ENST00000405240.5:ENST00000438462.1	protein_coding	protein_coding	protein_coding	protein_coding	6	63	2	1.6868	2.098705	2.51061	0.0364463	0.0217601	0.138959	0.123836
chr5	75347509	75347609	2390943	0	+	0.35	(0.32,0.35]	chr5	230931	2	SS5_PROX	SS5_PROX:INTRON	HMGCR	ENSG00000113161.17	ENST00000511206.5:ENST00000679456.1:ENST00000680160.1:ENST00000287936.9:ENST00000681567.1:ENST00000343975.9:ENST00000680940.1:ENST00000681271.1:ENST00000681410.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	63	2	1.6868	2.098705	2.51061	0.0364463	0.0217601	0.138959	0.123836
chr12	57412171	57412271	5339070	0	-	0.38	(0.378,0.408]	chr12	510716	160	INTRON	INTRON	R3HDM2	ENSG00000179912.21	ENST00000402412.6:ENST00000347140.7:ENST00000634871.1:ENST00000448732.1	protein_coding	protein_coding	protein_coding	protein_coding	3	35	2	1.97143	2.098665	2.2259	0.0662381	0.0398704	0.181924	0.161534
chr16	53447041	53447106	6353665	0	+	0.384615	(0.378,0.408]	chr16	609963	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RBL2	ENSG00000103479.17	ENST00000567964.6:ENST00000680543.1:ENST00000262133.11:ENST00000544405.6:ENST00000379935.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	35	2	1.97143	2.098665	2.2259	0.0662381	0.0398704	0.181924	0.161534
chr2	158480498	158480598	897375	0	+	0.39	(0.378,0.408]	chr2	99341	218	INTRON	INTRON	PKP4	ENSG00000144283.23	ENST00000389759.8:ENST00000426248.7:ENST00000389757.7:ENST00000457109.5:ENST00000452162.5:ENST00000411900.5:ENST00000421462.5:ENST00000462335.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	35	2	1.97143	2.098665	2.2259	0.0662381	0.0398704	0.181924	0.161534
chr7	10470862	10470962	3481487	0	-	0.39	(0.378,0.408]	chr7	325766	177	INTRON	INTRON	MGC4859	ENSG00000283117.1	ENST00000634803.1	lncRNA	lncRNA	lncRNA	lncRNA	3	35	2	1.97143	2.098665	2.2259	0.0662381	0.0398704	0.181924	0.161534
chr7	119716955	119717055	3628507	0	-	0.34	(0.32,0.35]	chr7	337319	116	INTRON	INTRON	LINC02476	ENSG00000225546.6	ENST00000660268.1:ENST00000431071.5	lncRNA	lncRNA	lncRNA	lncRNA	17	207	2	1.94016	2.0986200000000004	2.25708	0.00212057	0.0015077	0.0426005	0.0352794
chr5	133966197	133966297	2725695	0	-	0.28	[0,0.28]	chr5	256407	58	INTRON	INTRON	C5orf15	ENSG00000113583.8	ENST00000231512.5:ENST00000507191.1:ENST00000509913.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	141	2	1.21046	2.098605	2.98675	0.0669325	0.00144853	0.183051	0.0349199
chr3	191392659	191392759	1590121	0	+	0.27	[0,0.28]	chr3	164633	10	UTR3	UTR3:EXON_MRNA	CCDC50	ENSG00000152492.15	ENST00000392455.9	protein_coding	protein_coding	protein_coding	protein_coding	7	102	2	1.68134	2.0985899999999997	2.51584	0.0251592	0.0115397	0.133479	0.0889104
chr2	158475200	158475300	897322	0	+	0.32	(0.28,0.32]	chr2	99341	165	INTRON	INTRON	PKP4	ENSG00000144283.23	ENST00000389759.8:ENST00000426248.7:ENST00000389757.7:ENST00000457109.5:ENST00000452162.5:ENST00000411900.5:ENST00000421462.5:ENST00000462335.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	44	2	1.81582	2.098415	2.38101	0.068122	0.0456017	0.184298	0.164236
chr14	19065284	19065375	5655049	0	+	0.340659	(0.32,0.35]	chr14	538991	2	INTRON	INTRON	DUXAP9	ENSG00000225210.10	ENST00000549484.5:ENST00000547220.5:ENST00000610585.4:ENST00000621361.4:ENST00000620237.1:ENST00000619938.1:ENST00000644980.1:ENST00000619210.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	5	64	2	1.93031	2.0983549999999997	2.2664	0.0231421	0.0199969	0.126939	0.109608
chr7	133048083	133048183	3645549	0	-	0.33	(0.32,0.35]	chr7	338876	117	INTRON	INTRON	CHCHD3	ENSG00000106554.13	ENST00000262570.10:ENST00000448878.6:ENST00000496427.5:ENST00000423635.5:ENST00000481152.2:ENST00000457942.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	64	2	1.93031	2.0983549999999997	2.2664	0.0231421	0.0199969	0.126939	0.109608
chr11	63628528	63628626	4962385	0	-	0.571429	(0.57,1]	chr11	467121	46	UTR3	UTR3:EXON_MRNA	ATL3	ENSG00000184743.13	ENST00000398868.8	protein_coding	protein_coding	protein_coding	protein_coding	4	22	2	1.52865	2.0983300000000003	2.66801	0.0730445	0.0169968	0.189414	0.110899
chr17	81549105	81549205	6848710	0	-	0.67	(0.57,1]	chr17	678072	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	FAAP100	ENSG00000185504.17	ENST00000443656.6:ENST00000327787.13	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	22	2	1.52865	2.0983300000000003	2.66801	0.0730445	0.0169968	0.189414	0.110899
chr16	23908345	23908445	6324484	0	+	0.58	(0.57,1]	chr16	605701	146	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000498739.1	protein_coding	protein_coding	protein_coding	protein_coding	8	45	2	1.79978	2.09828	2.39678	0.0199509	0.00143653	0.109608	0.0347139
chr6	110887691	110887791	2939073	0	+	0.5	(0.476,0.515]	chr6	276770	1	SS5_PROX	SS5_PROX:INTRON	AMD1	ENSG00000123505.19	ENST00000451850.6:ENST00000675380.1:ENST00000368882.8:ENST00000672937.2:ENST00000368885.8:ENST00000368877.9:ENST00000368876.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	120	2	1.59973	2.0982250000000002	2.59672	0.0150784	6.3664e-4	0.0994339	0.0228285
chr8	37878815	37878915	3935738	0	-	0.45	(0.44,0.476]	chr8	360576	8	INTRON	INTRON	RAB11FIP1	ENSG00000156675.16	ENST00000330843.9:ENST00000287263.8:ENST00000522727.5	protein_coding	protein_coding	protein_coding	protein_coding	7	76	2	1.90381	2.098195	2.29258	0.0260626	0.00279559	0.122153	0.0488779
chr5	41731238	41731336	2611292	0	-	0.408163	(0.378,0.408]	chr5	248296	13	UTR3	UTR3:EXON_MRNA	OXCT1	ENSG00000083720.13	ENST00000196371.10:ENST00000512084.5:ENST00000510634.5	protein_coding	protein_coding	protein_coding	protein_coding	4	42	2	1.59317	2.098065	2.60296	0.0603812	0.0267851	0.19151	0.123349
chr2	241299446	241299545	1348407	0	-	0.40404	(0.378,0.408]	chr2	141648	265	INTRON	INTRON	HDLBP	ENSG00000115677.18	ENST00000310931.10:ENST00000391976.6:ENST00000428482.5:ENST00000430918.5:ENST00000441124.5:ENST00000413241.5:ENST00000423693.5:ENST00000425989.5:ENST00000420451.5:ENST00000417540.5:ENST00000462130.1:ENST00000496569.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	90	2	1.78703	2.09803	2.40903	0.0240043	0.00165739	0.119664	0.0376447
chr19	10753621	10753721	7014125	0	+	0.39	(0.378,0.408]	chr19	696920	346	INTRON	INTRON	DNM2	ENSG00000079805.19	ENST00000683738.1:ENST00000682285.1:ENST00000682524.1:ENST00000355667.11:ENST00000389253.9:ENST00000585892.5:ENST00000359692.10:ENST00000408974.8:ENST00000586939.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	79	2	1.90812	2.098025	2.28793	0.0264295	0.00291235	0.122506	0.0494641
chr3	140965221	140965320	1523187	0	+	0.313131	(0.28,0.32]	chr3	158669	21	UTR3	UTR3:EXON_MRNA:INTRON	SLC25A36	ENSG00000114120.14	ENST00000446041.6:ENST00000324194.12:ENST00000648615.1:ENST00000393015.8:ENST00000507429.5:ENST00000502594.5:ENST00000453248.6:ENST00000631654.1:ENST00000513887.5:ENST00000512023.5:ENST00000512506.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	98	2	1.75729	2.097995	2.4387	0.0131247	0.0126802	0.0999321	0.0926667
chr7	157192267	157192367	3454485	0	+	0.45	(0.44,0.476]	chr7	322957	31	INTRON	INTRON	UBE3C	ENSG00000009335.18	ENST00000348165.10	protein_coding	protein_coding	protein_coding	protein_coding	7	70	2	1.85696	2.097975	2.33899	0.0142027	0.0107727	0.0959987	0.0920575
chr11	86038400	86038500	5014536	0	-	0.4	(0.378,0.408]	chr11	473022	64	INTRON	INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000630913.2:ENST00000528398.5:ENST00000356360.9:ENST00000534412.5:ENST00000531558.1:ENST00000531930.5:ENST00000532041.5:ENST00000525162.5:ENST00000528256.1:ENST00000528411.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	87	2	1.75933	2.09795	2.43657	0.0106733	0.00858544	0.0861859	0.083729
chr19	38655951	38656051	7065811	0	+	0.4	(0.378,0.408]	chr19	705486	73	INTRON	INTRON	ACTN4	ENSG00000130402.13	ENST00000252699.7:ENST00000588618.5:ENST00000440400.2:ENST00000424234.7:ENST00000589528.1:ENST00000390009.7:ENST00000495553.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	66	2	1.5653	2.097935	2.63057	0.043739	0.0053733	0.162255	0.0642754
chr11	46789875	46789975	4948180	0	-	0.38	(0.378,0.408]	chr11	463772	4	SS5_PROX	SS5_PROX:INTRON	CKAP5	ENSG00000175216.15	ENST00000529230.6:ENST00000312055.9:ENST00000354558.7	protein_coding	protein_coding	protein_coding	protein_coding	7	80	2	2.01071	2.097915	2.18512	0.0111045	0.00902136	0.0876025	0.0851259
chr1	219199764	219199864	318639	0	+	0.47	(0.44,0.476]	chr1	36461	6	INTRON	INTRON	LYPLAL1	ENSG00000143353.12	ENST00000460522.5:ENST00000366927.3:ENST00000366928.10:ENST00000477938.5:ENST00000463964.5:ENST00000483635.5:ENST00000474379.5:ENST00000469590.5:ENST00000478794.5:ENST00000475724.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	22	231	2	1.87962	2.09788	2.31614	0.00166775	3.40336e-4	0.0378607	0.0170928
chr4	122279076	122279176	2033869	0	+	0.42	(0.408,0.44]	chr4	202056	30	EXON_MRNA	EXON_MRNA:INTRON	KIAA1109	ENSG00000138688.17	ENST00000679879.1:ENST00000264501.8:ENST00000684987.1:ENST00000693420.1:ENST00000693334.1:ENST00000690536.1:ENST00000388738.8:ENST00000419325.5:ENST00000686093.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	34	2	2.00768	2.097875	2.18807	0.0708044	0.035843	0.184528	0.152216
chr5	146137737	146137836	2746936	0	-	0.434343	(0.408,0.44]	chr5	258796	17	INTRON	INTRON	LARS1	ENSG00000133706.19	ENST00000674174.1:ENST00000674170.1:ENST00000674479.1:ENST00000674309.1:ENST00000674218.1:ENST00000674467.1:ENST00000674290.1:ENST00000674447.1:ENST00000674270.1:ENST00000674383.1:ENST00000674191.1:ENST00000674158.1:ENST00000506231.6:ENST00000674471.1:ENST00000674181.1:ENST00000394434.7:ENST00000674398.1:ENST00000674277.1:ENST00000274562.13:ENST00000510191.5:ENST00000504323.6:ENST00000674310.1:ENST00000512412.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	34	2	2.00768	2.097875	2.18807	0.0708044	0.035843	0.184528	0.152216
chr2	235497447	235497547	1041369	0	+	0.42	(0.408,0.44]	chr2	111217	22	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	77	2	1.74555	2.09779	2.45003	0.0118908	0.00990006	0.0962115	0.0838372
chr6	15274646	15274746	2823232	0	+	0.47	(0.44,0.476]	chr6	265190	253	INTRON	INTRON	JARID2	ENSG00000008083.14	ENST00000341776.7:ENST00000397311.4	protein_coding	protein_coding	protein_coding	protein_coding	10	87	2	1.34727	2.097635	2.848	0.0344229	0.00215274	0.147767	0.0417866
chr10	73240667	73240766	4648881	0	-	0.464646	(0.44,0.476]	chr10	427674	9	INTRON	INTRON	DNAJC9	ENSG00000213551.7	ENST00000469143.1:ENST00000453189.2	protein_coding	processed_transcript	protein_coding	processed_transcript	9	98	2	1.78423	2.097585	2.41094	0.0143065	0.00205841	0.104058	0.0409869
chr15	92897111	92897198	6103651	0	+	0.333333	(0.32,0.35]	chr15	581376	1	EXON_LNCRNA	EXON_LNCRNA:INTRON	CHASERR:ENSG00000279765	ENSG00000272888.8:ENSG00000279765.3	ENST00000653163.1:ENST00000557682.6:ENST00000556895.5:ENST00000629685.2:ENST00000554133.5:ENST00000630790.1:ENST00000555520.1:ENST00000692976.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	14	150	2	1.80635	2.097585	2.38882	0.00566663	0.00345212	0.0653997	0.0539802
chr22	16606091	16606191	7473401	0	+	0.38	(0.378,0.408]	chr22	761972	35	INTRON	INTRON	TPTEP1:ENSG00000283633	ENSG00000100181.22:ENSG00000283633.1	ENST00000558085.6:ENST00000400593.6:ENST00000592918.5:ENST00000592107.5:ENST00000426585.5:ENST00000591299.1	lncRNA	lncRNA	lncRNA:transcribed_unprocessed_pseudogene	lncRNA:processed_transcript	13	107	2	1.33048	2.09756	2.86464	0.0250007	0.00215581	0.132788	0.0417866
chr1	51756465	51756561	100804	0	+	0.354167	(0.35,0.378]	chr1	13323	2	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	OSBPL9	ENSG00000117859.19	ENST00000371714.5:ENST00000428468.6:ENST00000447887.5:ENST00000495776.5:ENST00000435274.6:ENST00000453295.5:ENST00000489990.5:ENST00000484890.5:ENST00000532975.5:ENST00000534040.5:ENST00000527631.5:ENST00000531828.5:ENST00000361556.9:ENST00000473207.6:ENST00000533884.5:ENST00000526917.5:ENST00000462759.5:ENST00000486942.5:ENST00000524620.1:ENST00000528603.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	83	2	1.6344	2.097555	2.56071	0.0189573	0.00725312	0.118501	0.072984
chrX	154706741	154706841	7914873	0	-	0.43	(0.408,0.44]	chrX	806091	63	INTRON	INTRON	GAB3	ENSG00000160219.12	ENST00000496390.5:ENST00000424127.3:ENST00000369575.7:ENST00000369568.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	49	2	1.44993	2.097555	2.74518	0.0638951	0.0152229	0.177824	0.108535
chr1	32680258	32680347	66138	0	+	0.280899	(0.28,0.32]	chr1	8472	6	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RBBP4	ENSG00000162521.19	ENST00000373493.10:ENST00000373485.5:ENST00000460669.5:ENST00000482190.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	17	210	2	1.61726	2.097485	2.57771	0.00805391	9.05485e-4	0.0805393	0.0278396
chr15	101293893	101293983	6270037	0	-	0.522222	(0.515,0.57]	chr15	598034	1	INTRON	INTRON	SNRPA1	ENSG00000131876.18	ENST00000254193.11:ENST00000558036.5:ENST00000559309.5:ENST00000394082.8:ENST00000540017.6:ENST00000560496.5:ENST00000560383.5:ENST00000558059.5:ENST00000560987.5:ENST00000560856.5:ENST00000558020.1:ENST00000561187.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	36	2	1.63184	2.0974500000000003	2.56306	0.0545832	0.0247751	0.165292	0.131869
chr6	87252157	87252256	2914236	0	+	0.535354	(0.515,0.57]	chr6	275337	23	INTRON	INTRON	ZNF292	ENSG00000188994.13	ENST00000369577.8:ENST00000339907.8:ENST00000496806.2:ENST00000466062.2	protein_coding	protein_coding	protein_coding	protein_coding	4	36	2	1.63184	2.0974500000000003	2.56306	0.0545832	0.0247751	0.165292	0.131869
chr9	130784653	130784753	4214571	0	+	0.46	(0.44,0.476]	chr9	386427	698	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000393293.4	protein_coding	protein_coding	protein_coding	protein_coding	27	284	2	1.93647	2.09743	2.25839	9.01139e-4	2.70205e-4	0.0275178	0.0150813
chr17	81598008	81598105	6849205	0	-	0.536082	(0.515,0.57]	chr17	678181	3	INTRON	INTRON	NPLOC4	ENSG00000182446.14	ENST00000331134.11:ENST00000374747.9:ENST00000574897.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	13	100	2	1.5531	2.0974049999999997	2.64171	0.0104004	0.00130576	0.0900585	0.0331539
chr11	86047984	86048083	5014632	0	-	0.626263	(0.57,1]	chr11	473022	160	INTRON	INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000630913.2:ENST00000528398.5:ENST00000356360.9:ENST00000534412.5:ENST00000531558.1:ENST00000531930.5:ENST00000532041.5:ENST00000525162.5:ENST00000528256.1:ENST00000528411.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	39	2	2.02689	2.09734	2.16779	0.00900694	0.00839052	0.0823837	0.0803518
chr16	85591128	85591228	6415743	0	+	0.58	(0.57,1]	chr16	615470	344	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	7	39	2	2.02689	2.09734	2.16779	0.00900694	0.00839052	0.0823837	0.0803518
chr19	49667956	49668054	7090340	0	+	0.571429	(0.57,1]	chr19	710120	4	INTRON	INTRON	BCL2L12	ENSG00000126453.10	ENST00000611631.4:ENST00000614495.4:ENST00000616144.4:ENST00000619007.4:ENST00000246785.7:ENST00000441864.6:ENST00000246784.8:ENST00000594157.5:ENST00000598979.5:ENST00000600947.5:ENST00000598306.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	39	2	1.95484	2.09728	2.23972	0.0113205	0.00670296	0.0948452	0.0707084
chr16	28209908	28210004	6468446	0	-	0.541667	(0.515,0.57]	chr16	624603	4	INTRON	INTRON	XPO6	ENSG00000169180.12	ENST00000304658.10:ENST00000565698.5:ENST00000569951.1:ENST00000566073.1	protein_coding	protein_coding	protein_coding	protein_coding	5	47	2	1.8661	2.09723	2.32836	0.0274846	0.0126662	0.123904	0.0982897
chr17	61866261	61866361	6808956	0	-	0.57	(0.515,0.57]	chr17	672646	10	UTR3	UTR3:EXON_MRNA	INTS2	ENSG00000108506.13	ENST00000251334.7:ENST00000617492.4:ENST00000444766.7:ENST00000646745.1:ENST00000647009.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	47	2	1.8661	2.09723	2.32836	0.0274846	0.0126662	0.123904	0.0982897
chrX	123609701	123609800	7877774	0	-	0.525253	(0.515,0.57]	chrX	802391	56	INTRON	INTRON	THOC2	ENSG00000125676.20	ENST00000448128.5:ENST00000245838.13:ENST00000441692.5:ENST00000492203.1:ENST00000497887.5:ENST00000618150.4:ENST00000432353.5:ENST00000455053.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	47	2	1.8661	2.09723	2.32836	0.0274846	0.0126662	0.123904	0.0982897
chr6	37831310	37831410	2857148	0	+	0.44	(0.408,0.44]	chr6	270225	109	INTRON	INTRON	ZFAND3	ENSG00000156639.12	ENST00000287218.9:ENST00000373391.6:ENST00000474522.5	protein_coding	protein_coding	protein_coding	protein_coding	7	61	2	1.67948	2.0972	2.51492	0.0329839	0.0154364	0.133816	0.108739
chr1	17431780	17431879	384907	0	-	0.585859	(0.57,1]	chr1	45493	22	INTRON	INTRON	RCC2	ENSG00000179051.14	ENST00000375436.9:ENST00000375433.3	protein_coding	protein_coding	protein_coding	protein_coding	4	24	2	2.02391	2.097085	2.17026	0.0339274	0.0220522	0.134508	0.123836
chr4	17928315	17928414	2117356	0	-	0.585859	(0.57,1]	chr4	209129	186	INTRON	INTRON	LCORL	ENSG00000178177.17	ENST00000635767.2:ENST00000326877.8:ENST00000675131.1:ENST00000675143.1:ENST00000637787.1:ENST00000675605.1:ENST00000510451.5:ENST00000510121.5:ENST00000675927.1:ENST00000382224.5:ENST00000382226.5:ENST00000676061.1:ENST00000674942.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	24	2	2.02391	2.097085	2.17026	0.0339274	0.0220522	0.134508	0.123836
chr5	139670074	139670174	2501418	0	+	0.64	(0.57,1]	chr5	239084	39	INTRON	INTRON	CXXC5	ENSG00000171604.12	ENST00000502295.1:ENST00000504944.1:ENST00000302517.8:ENST00000507139.5:ENST00000504844.1:ENST00000502336.5:ENST00000520967.1:ENST00000511048.1:ENST00000512816.1:ENST00000509238.1	protein_coding	protein_coding	protein_coding	protein_coding	4	24	2	2.02391	2.097085	2.17026	0.0339274	0.0220522	0.134508	0.123836
chr6	31757978	31758071	2843677	0	+	0.376344	(0.35,0.378]	chr6	267823	7	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	MSH5:MSH5-SAPCD1	ENSG00000204410.16:ENSG00000255152.8	ENST00000375755.8:ENST00000375750.9:ENST00000650702.1:ENST00000493662.6:ENST00000375703.7:ENST00000375740.7:ENST00000423982.6:ENST00000463144.5:ENST00000450148.5:ENST00000468602.5:ENST00000468136.5:ENST00000395853.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	24	266	2	1.78808	2.096895	2.40571	0.00205009	3.53102e-4	0.0420043	0.0174694
chr4	159134198	159134298	2073811	0	+	0.35	(0.32,0.35]	chr4	205172	296	INTRON	INTRON	RAPGEF2	ENSG00000109756.10	ENST00000644474.1:ENST00000691494.1:ENST00000505478.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	68	2	1.50457	2.09689	2.68921	0.0309203	0.0230336	0.143443	0.118056
chr20	32384035	32384135	7256083	0	+	0.41	(0.408,0.44]	chr20	737076	116	INTRON	INTRON	ASXL1	ENSG00000171456.21	ENST00000651418.1:ENST00000375687.10:ENST00000613218.4:ENST00000644587.1:ENST00000620121.4:ENST00000646985.1:ENST00000643168.1:ENST00000306058.9:ENST00000645688.1:ENST00000470145.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	85	2	1.39614	2.096885	2.79763	0.0567929	5.76635e-4	0.167723	0.0218153
chr5	131777536	131777636	2720550	0	-	0.33	(0.32,0.35]	chr5	255730	325	INTRON	INTRON	FNIP1	ENSG00000217128.13	ENST00000510461.6:ENST00000307954.12:ENST00000307968.11:ENST00000511848.1	protein_coding	protein_coding	protein_coding	protein_coding	4	53	2	1.94202	2.096875	2.25173	0.0486128	0.0180122	0.153946	0.114436
chr1	108700213	108700310	178213	0	+	0.28866000000000003	(0.28,0.32]	chr1	19368	3	UTR3	UTR3:EXON_MRNA	PRPF38B	ENSG00000134186.12	ENST00000370025.9:ENST00000370021.1	protein_coding	protein_coding	protein_coding	protein_coding	7	98	2	1.83325	2.09687	2.36049	0.0199548	0.00700135	0.120668	0.0718189
chr1	6208280	6208380	366298	0	-	0.44	(0.408,0.44]	chr1	43055	2	SS5_PROX	SS5_PROX:INTRON	RPL22	ENSG00000116251.11	ENST00000471204.5:ENST00000465335.1	protein_coding	protein_coding	protein_coding	protein_coding	4	46	2	2.07919	2.0968299999999997	2.11447	0.0291499	0.0285207	0.14147	0.12666
chr5	131588689	131588788	2718705	0	-	0.424242	(0.408,0.44]	chr5	255608	263	INTRON	INTRON	RAPGEF6	ENSG00000158987.22	ENST00000509018.6:ENST00000507093.5:ENST00000296859.10:ENST00000627212.2:ENST00000308008.10:ENST00000515170.5:ENST00000510071.5:ENST00000503398.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	46	2	2.07919	2.0968299999999997	2.11447	0.0291499	0.0285207	0.14147	0.12666
chr7	148730783	148730882	3444009	0	+	0.454545	(0.44,0.476]	chr7	321178	1	INTRON	INTRON	CUL1	ENSG00000055130.18	ENST00000409469.5:ENST00000662716.1:ENST00000665936.1:ENST00000663044.1:ENST00000602748.5:ENST00000663835.1:ENST00000655324.1:ENST00000662132.1:ENST00000325222.9:ENST00000656001.1:ENST00000666124.1:ENST00000671421.1:ENST00000671397.1:ENST00000662670.1:ENST00000660240.1:ENST00000662975.1:ENST00000660013.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	12	120	2	1.88098	2.09681	2.31264	0.00373563	0.00316873	0.0562234	0.0503085
chr10	35414045	35414145	4425279	0	+	0.37	(0.35,0.378]	chr10	407905	188	INTRON	INTRON	CCNY	ENSG00000108100.18	ENST00000374706.5:ENST00000490012.6:ENST00000493157.6:ENST00000374704.8:ENST00000265375.13:ENST00000339497.7:ENST00000492478.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	70	2	1.49446	2.09675	2.69904	0.054297	0.00438476	0.182243	0.0585064
chr6	7130860	7130959	2798594	0	+	0.383838	(0.378,0.408]	chr6	263723	218	INTRON	INTRON	RREB1	ENSG00000124782.21	ENST00000379933.7:ENST00000491191.5:ENST00000471433.5:ENST00000379938.7:ENST00000467782.5:ENST00000349384.10:ENST00000334984.10:ENST00000475946.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	11	121	2	2.09363	2.0967450000000003	2.09986	0.00513434	0.00253099	0.062965	0.0465056
chr18	1342957	1343057	6941609	0	-	0.31	(0.28,0.32]	chr18	686579	190	INTRON	INTRON	LINC00470	ENSG00000132204.14	ENST00000657423.1:ENST00000657618.1:ENST00000584090.5:ENST00000660947.1:ENST00000669242.1:ENST00000660475.1:ENST00000653775.1:ENST00000661931.1:ENST00000412816.7:ENST00000577867.5:ENST00000584492.5:ENST00000667416.1:ENST00000661852.1:ENST00000657919.1:ENST00000661646.1:ENST00000667776.1:ENST00000654559.1:ENST00000661233.1:ENST00000653213.1:ENST00000659094.1:ENST00000660964.1:ENST00000577403.6:ENST00000660358.1:ENST00000669153.1:ENST00000657121.1:ENST00000655957.1:ENST00000659289.1:ENST00000665133.1:ENST00000671558.1:ENST00000666542.1:ENST00000663512.1:ENST00000582862.6:ENST00000578835.5:ENST00000669312.1:ENST00000581430.5:ENST00000581212.1:ENST00000658090.1	lncRNA	lncRNA	lncRNA	lncRNA	6	88	2	1.85772	2.096725	2.33573	0.0300199	0.00764237	0.142135	0.0752681
chr1	235123463	235123562	661784	0	-	0.424242	(0.408,0.44]	chr1	78339	7	INTRON	INTRON	TOMM20	ENSG00000173726.11	ENST00000366607.5	protein_coding	protein_coding	protein_coding	protein_coding	5	57	2	2.04611	2.096715	2.14732	0.0237354	0.016628	0.129075	0.102621
chr3	177129775	177129874	1871767	0	-	0.393939	(0.378,0.408]	chr3	187412	38	INTRON	INTRON	TBL1XR1	ENSG00000177565.18	ENST00000457928.7:ENST00000430069.5:ENST00000673974.1:ENST00000352800.10:ENST00000422442.6:ENST00000428970.5:ENST00000424913.5:ENST00000437738.5:ENST00000431421.5:ENST00000635794.1:ENST00000630796.2:ENST00000450267.5:ENST00000630833.2:ENST00000431674.5:ENST00000422066.5:ENST00000443315.5:ENST00000627825.2:ENST00000427349.5:ENST00000413084.5:ENST00000637137.1:ENST00000491623.2:ENST00000637544.1:ENST00000636478.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	42	2	1.65821	2.0966199999999997	2.53503	0.0506302	0.0319942	0.17547	0.13174
chr1	86874680	86874780	498715	0	-	0.22	[0,0.28]	chr1	59184	62	INTRON	INTRON	SELENOF	ENSG00000183291.18	ENST00000331835.10:ENST00000370554.5:ENST00000648872.1:ENST00000469566.5:ENST00000401030.4:ENST00000497861.5:ENST00000467557.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	80	2	2.06132	2.09654	2.13176	0.0408268	0.0135097	0.1451	0.101363
chr15	63811733	63811833	6200683	0	-	0.49	(0.476,0.515]	chr15	591445	308	INTRON	INTRON	HERC1	ENSG00000103657.14	ENST00000443617.7:ENST00000561400.1:ENST00000559886.1:ENST00000558532.1:ENST00000560462.1:ENST00000560316.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	104	2	1.59633	2.0965249999999997	2.59672	0.0233044	6.3664e-4	0.118272	0.0228285
chr3	150565726	150565823	1534223	0	+	0.278351	[0,0.28]	chr3	159878	1	INTRON	INTRON	EIF2A	ENSG00000144895.12	ENST00000487799.5:ENST00000494558.5:ENST00000460851.6:ENST00000406576.7:ENST00000482093.5:ENST00000273435.9:ENST00000462221.5:ENST00000477551.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	80	2	1.91898	2.0964099999999997	2.27384	0.0266433	0.0233847	0.134413	0.11839
chr6	163439301	163439401	3031951	0	+	0.44	(0.408,0.44]	chr6	282563	99	INTRON	INTRON	QKI	ENSG00000112531.17	ENST00000361758.8:ENST00000453779.6:ENST00000275262.11:ENST00000392127.6:ENST00000361752.8:ENST00000361195.6:ENST00000424802.7:ENST00000545607.5:ENST00000544436.5:ENST00000537041.5:ENST00000537124.5:ENST00000545346.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	13	139	2	1.59462	2.09639	2.59816	0.0191739	1.65762e-4	0.108861	0.0111355
chrX	3929471	3929570	7747892	0	-	0.373737	(0.35,0.378]	chrX	793164	89	INTRON	INTRON	ENSG00000285756	ENSG00000285756.2	ENST00000650538.1	lncRNA	lncRNA	lncRNA	lncRNA	4	47	2	1.70607	2.09632	2.48657	0.0482819	0.032907	0.153283	0.145164
chr12	116135107	116135207	5424120	0	-	0.47	(0.44,0.476]	chr12	518263	232	INTRON	INTRON	MED13L	ENSG00000123066.9	ENST00000281928.9:ENST00000650226.1:ENST00000548743.2:ENST00000647567.1:ENST00000551197.2	protein_coding	protein_coding	protein_coding	protein_coding	11	116	2	1.98356	2.096295	2.20903	0.00757232	0.00143587	0.0749063	0.0347139
chr6	7108064	7108164	2798365	0	+	0.64	(0.57,1]	chr6	263717	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	RREB1	ENSG00000124782.21	ENST00000379933.7:ENST00000491191.5:ENST00000471433.5:ENST00000379938.7:ENST00000467782.5:ENST00000349384.10:ENST00000334984.10	protein_coding	protein_coding	protein_coding	protein_coding	5	25	2	1.52818	2.09628	2.66438	0.0508101	0.0171563	0.175989	0.104099
chr1	32174872	32174971	64139	0	+	0.343434	(0.32,0.35]	chr1	8150	41	UTR3	UTR3:EXON_MRNA	KPNA6	ENSG00000025800.14	ENST00000373625.8	protein_coding	protein_coding	protein_coding	protein_coding	5	55	2	1.68188	2.0962449999999997	2.51061	0.0364463	0.031521	0.144381	0.138959
chr18	2689338	2689430	6865205	0	+	0.467391	(0.44,0.476]	chr18	679974	2	INTRON	INTRON	SMCHD1	ENSG00000101596.17	ENST00000320876.11:ENST00000688342.1:ENST00000684915.1:ENST00000581226.1:ENST00000693213.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	55	2	1.49942	2.096195	2.69297	0.0792118	0.00333494	0.199574	0.0528877
chr19	898339	898439	7110779	0	-	0.47	(0.44,0.476]	chr19	714142	4	INTRON	INTRON	R3HDM4	ENSG00000198858.10	ENST00000589428.5:ENST00000361574.10:ENST00000587975.2:ENST00000591829.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	55	2	1.49942	2.096195	2.69297	0.0792118	0.00333494	0.199574	0.0528877
chr5	10262204	10262296	2317596	0	+	0.413043	(0.408,0.44]	chr5	224588	6	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CCT5	ENSG00000150753.12	ENST00000503026.5:ENST00000515390.5:ENST00000280326.9:ENST00000515676.5:ENST00000506600.1:ENST00000511995.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	84	2	1.9279	2.09615	2.2644	0.00807087	0.00768371	0.0806514	0.0753803
chr6	36601362	36601448	2854492	0	+	0.44186	(0.44,0.476]	chr6	269795	3	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SRSF3	ENSG00000112081.17	ENST00000373715.11:ENST00000477442.6:ENST00000620941.1:ENST00000620389.1:ENST00000614136.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	16	173	2	1.88098	2.09607	2.31116	0.00373563	5.8568e-4	0.0562234	0.0224393
chr6	143189513	143189612	2976479	0	+	0.313131	(0.28,0.32]	chr6	279160	20	UTR3	UTR3:EXON_MRNA:INTRON	AIG1	ENSG00000146416.19	ENST00000367601.8:ENST00000447498.5:ENST00000646199.1:ENST00000357847.9:ENST00000629020.2:ENST00000275235.8:ENST00000494282.6:ENST00000458219.1	protein_coding	protein_coding	protein_coding	protein_coding	9	117	2	1.83163	2.09606	2.36049	0.00983832	0.00700135	0.0877296	0.0718189
chr1	93129548	93129648	163057	0	+	0.29	(0.28,0.32]	chr1	17623	1	SS5_PROX	SS5_PROX:INTRON	MTF2	ENSG00000143033.18	ENST00000540243.5:ENST00000545708.5:ENST00000370298.9:ENST00000471953.5:ENST00000370303.4:ENST00000467953.5:ENST00000497976.5:ENST00000476037.5:ENST00000487263.5:ENST00000489480.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	117	2	1.80728	2.09605	2.38482	0.0108259	0.00641776	0.0920575	0.0695827
chr8	52687467	52687566	3950838	0	-	0.363636	(0.35,0.378]	chr8	362390	1	INTRON	INTRON	RB1CC1	ENSG00000023287.13	ENST00000025008.10:ENST00000435644.6:ENST00000521611.1:ENST00000518710.5:ENST00000517963.1:ENST00000518211.1:ENST00000518468.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	44	2	1.58862	2.096015	2.60341	0.0615516	0.0275785	0.193423	0.123904
chr6	36919377	36919477	2855147	0	+	0.32	(0.28,0.32]	chr6	269903	4	SS3_PROX	SS3_PROX:INTRON	C6orf89	ENSG00000198663.17	ENST00000359359.6:ENST00000355190.7:ENST00000373685.1:ENST00000480824.7	protein_coding	protein_coding	protein_coding	protein_coding	5	70	2	2.00989	2.096005	2.18212	0.0427801	0.010265700000000001	0.148082	0.089002
chr7	106282155	106282255	3608583	0	-	0.32	(0.28,0.32]	chr7	336542	46	INTRON	INTRON	NAMPT	ENSG00000105835.13	ENST00000681491.1:ENST00000222553.8:ENST00000681494.1:ENST00000680708.1:ENST00000681653.1:ENST00000681391.1:ENST00000680991.1:ENST00000680077.1:ENST00000681456.1:ENST00000680675.1:ENST00000681550.1:ENST00000680864.1:ENST00000680584.1:ENST00000680669.1:ENST00000424768.2:ENST00000681255.1:ENST00000679873.1:ENST00000679643.1:ENST00000681878.1:ENST00000489732.2:ENST00000679951.1:ENST00000680823.1:ENST00000680468.1:ENST00000681936.1:ENST00000680152.1:ENST00000681887.1:ENST00000680129.1:ENST00000680786.1:ENST00000681223.1:ENST00000679717.1:ENST00000354289.9:ENST00000491027.6:ENST00000393618.6:ENST00000489358.5:ENST00000441045.6:ENST00000417537.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	70	2	2.00989	2.096005	2.18212	0.0427801	0.010265700000000001	0.148082	0.089002
chr1	247148357	247148457	683632	0	-	0.33	(0.32,0.35]	chr1	80151	92	INTRON	INTRON	ZNF124	ENSG00000196418.13	ENST00000472531.5:ENST00000476312.1:ENST00000491356.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	55	2	1.88468	2.0959950000000003	2.30731	0.0515071	0.0176772	0.176696	0.10525
chr6	169670472	169670568	3266807	0	-	0.5	(0.476,0.515]	chr6	303233	11	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	WDR27	ENSG00000184465.16	ENST00000448612.6:ENST00000648472.1:ENST00000423258.5:ENST00000647790.1:ENST00000647873.1:ENST00000649303.1:ENST00000647889.1:ENST00000648017.1:ENST00000496752.1:ENST00000650296.1:ENST00000546953.1:ENST00000649806.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	95	2	2.06011	2.095955	2.1318	0.00869033	0.00333541	0.0788605	0.0528877
chrX	123614289	123614389	7877826	0	-	0.35	(0.32,0.35]	chrX	802417	1	SS3_PROX	SS3_PROX:INTRON	THOC2	ENSG00000125676.20	ENST00000448128.5:ENST00000245838.13:ENST00000441692.5:ENST00000497887.5:ENST00000618150.4:ENST00000432353.5:ENST00000355725.8:ENST00000416618.5:ENST00000491737.5:ENST00000464992.6:ENST00000496830.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	61	2	1.50258	2.095895	2.68921	0.0399817	0.0230336	0.161534	0.118056
chr15	82537731	82537826	6247401	0	-	0.347368	(0.32,0.35]	chr15	596159	10	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	RPS17	ENSG00000182774.13	ENST00000647841.1:ENST00000561157.5:ENST00000558397.1:ENST00000561068.5:ENST00000560612.1:ENST00000560639.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:non_stop_decay:nonsense_mediated_decay	6	80	2	2.05211	2.09578	2.13945	0.0254517	0.0106769	0.133676	0.0861859
chr11	33130712	33130812	4940665	0	-	0.35	(0.32,0.35]	chr11	462854	219	INTRON	INTRON	CSTF3	ENSG00000176102.13	ENST00000323959.9:ENST00000524827.6	protein_coding	protein_coding	protein_coding	protein_coding	3	39	2	1.88468	2.0957049999999997	2.30673	0.0584434	0.0515071	0.176696	0.167723
chr5	81716059	81716159	2666013	0	-	0.34	(0.32,0.35]	chr5	252440	49	INTRON	INTRON	SSBP2	ENSG00000145687.17	ENST00000320672.9:ENST00000615665.4:ENST00000509053.5:ENST00000514493.5:ENST00000505980.5:ENST00000515395.5:ENST00000507655.5:ENST00000507472.5:ENST00000509013.2:ENST00000504174.5:ENST00000512098.5:ENST00000506960.5:ENST00000508912.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	39	2	1.88468	2.0957049999999997	2.30673	0.0584434	0.0515071	0.176696	0.167723
chr6	35888314	35888413	3088492	0	-	0.323232	(0.32,0.35]	chr6	288872	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SRPK1	ENSG00000096063.16	ENST00000373825.7:ENST00000423325.6:ENST00000346162.10:ENST00000361690.7:ENST00000510290.5:ENST00000373821.6:ENST00000508473.5:ENST00000512445.5:ENST00000513367.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	39	2	1.88468	2.0957049999999997	2.30673	0.0584434	0.0515071	0.176696	0.167723
chr8	97664572	97664672	3809264	0	+	0.34	(0.32,0.35]	chr8	352842	30	INTRON	INTRON	MTDH	ENSG00000147649.10	ENST00000336273.8:ENST00000519934.5:ENST00000522313.1	protein_coding	protein_coding	protein_coding	protein_coding	3	39	2	1.88468	2.0957049999999997	2.30673	0.0584434	0.0515071	0.176696	0.167723
chr12	79931396	79931496	5376498	0	-	0.39	(0.378,0.408]	chr12	512797	176	INTRON	INTRON	PPP1R12A	ENSG00000058272.19	ENST00000261207.9:ENST00000450142.7:ENST00000437004.6:ENST00000550107.5:ENST00000547330.5:ENST00000550510.5	protein_coding	protein_coding	protein_coding	protein_coding	8	79	2	1.674	2.095665	2.51733	0.0159536	0.00808319	0.109464	0.0766625
chr12	108673992	108674092	5406197	0	-	0.38	(0.378,0.408]	chr12	516004	115	INTRON	INTRON	CORO1C	ENSG00000110880.11	ENST00000261401.8:ENST00000420959.6:ENST00000541050.5:ENST00000549384.5:ENST00000421578.6:ENST00000550542.5:ENST00000549772.5:ENST00000552871.5:ENST00000547294.5:ENST00000550032.5:ENST00000551550.5:ENST00000546571.5:ENST00000551044.1:ENST00000547170.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	65	2	1.71374	2.09563	2.47752	0.0274158	0.0092831	0.136498	0.0817766
chr15	64535749	64535849	6044841	0	+	0.33	(0.32,0.35]	chr15	575696	328	INTRON	INTRON	ZNF609	ENSG00000180357.10	ENST00000326648.5:ENST00000558680.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	39	2	1.81328	2.09561	2.37794	0.0615716	0.0498601	0.193423	0.156383
chr15	94947019	94947119	6106105	0	+	0.33	(0.32,0.35]	chr15	581688	224	INTRON	INTRON	ENSG00000277654	ENSG00000277654.6	ENST00000618611.4:ENST00000648065.1:ENST00000618377.1:ENST00000621842.4:ENST00000615751.4:ENST00000614581.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	3	39	2	1.81328	2.09561	2.37794	0.0615716	0.0498601	0.193423	0.156383
chr2	171039854	171039954	1262874	0	-	0.34	(0.32,0.35]	chr2	133843	111	INTRON	INTRON	TLK1	ENSG00000198586.14	ENST00000431350.7:ENST00000360843.7:ENST00000359766.7:ENST00000521943.5:ENST00000434911.6:ENST00000409443.6:ENST00000413010.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	39	2	1.81328	2.09561	2.37794	0.0615716	0.0498601	0.193423	0.156383
chr5	138356384	138356484	2494888	0	+	0.34	(0.32,0.35]	chr5	238471	30	INTRON	INTRON	KDM3B	ENSG00000120733.14	ENST00000314358.10	protein_coding	protein_coding	protein_coding	protein_coding	3	39	2	1.81328	2.09561	2.37794	0.0615716	0.0498601	0.193423	0.156383
chr6	106196672	106196772	3176863	0	-	0.35	(0.32,0.35]	chr6	296154	96	INTRON	INTRON	ATG5	ENSG00000057663.16	ENST00000636437.1:ENST00000636335.1:ENST00000369070.5:ENST00000369076.8:ENST00000635758.2:ENST00000360666.6:ENST00000343245.7:ENST00000475645.1:ENST00000646025.1:ENST00000613993.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	39	2	1.81328	2.09561	2.37794	0.0615716	0.0498601	0.193423	0.156383
chr19	28537976	28538076	7166475	0	-	0.29	(0.28,0.32]	chr19	724193	28	INTRON	INTRON	ENSG00000283403	ENSG00000283403.1	ENST00000592347.5	lncRNA	lncRNA	lncRNA	lncRNA	4	58	2	2.05458	2.095545	2.13651	0.0381508	0.0265696	0.141764	0.134088
chr1	50573625	50573725	448375	0	-	0.44	(0.408,0.44]	chr1	54195	60	INTRON	INTRON	FAF1	ENSG00000185104.21	ENST00000396153.7:ENST00000494400.5:ENST00000472808.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	55	2	2.05947	2.09552	2.13157	0.0333232	0.0109031	0.134145	0.0923273
chr16	20702172	20702272	6316958	0	+	0.47	(0.44,0.476]	chr16	604566	201	INTRON	INTRON	ACSM3	ENSG00000005187.12	ENST00000568235.5:ENST00000501740.6:ENST00000561584.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	42	2	1.98146	2.095475	2.20949	0.0672585	0.0186013	0.183051	0.117264
chr16	87868087	87868186	6539084	0	-	0.363636	(0.35,0.378]	chr16	633647	46	INTRON	INTRON	SLC7A5	ENSG00000103257.9	ENST00000261622.5	protein_coding	protein_coding	protein_coding	protein_coding	15	173	2	1.84072	2.09547	2.35022	0.00811521	3.47139e-4	0.0766625	0.0166033
chr22	19108952	19109052	7551880	0	-	0.46	(0.44,0.476]	chr22	771903	191	INTRON	INTRON	DGCR2	ENSG00000070413.20	ENST00000537045.5:ENST00000545799.5:ENST00000263196.12:ENST00000389262.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	19	199	2	1.99263	2.095405	2.19818	0.00131564	8.12501e-4	0.0333932	0.0263656
chr8	11844535	11844633	3908601	0	-	0.397959	(0.378,0.408]	chr8	358133	4	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CTSB	ENSG00000164733.22	ENST00000677671.1:ENST00000678092.1:ENST00000679128.1:ENST00000677873.1:ENST00000676691.1:ENST00000678598.1:ENST00000353047.11:ENST00000677650.1:ENST00000526481.7:ENST00000676825.1:ENST00000676952.1:ENST00000679121.1:ENST00000677283.1:ENST00000678242.1:ENST00000677366.1:ENST00000677544.1:ENST00000530640.7:ENST00000677418.1:ENST00000677047.1:ENST00000676502.1:ENST00000531089.6:ENST00000678629.1:ENST00000678145.1:ENST00000678929.1:ENST00000677819.1:ENST00000677415.1:ENST00000678357.1:ENST00000676755.1:ENST00000420692.7:ENST00000679051.1:ENST00000453527.7:ENST00000678067.1:ENST00000679140.1:ENST00000524654.2:ENST00000677082.1:ENST00000533455.6:ENST00000531551.5:ENST00000534382.6:ENST00000679214.1:ENST00000531502.6:ENST00000534510.6:ENST00000677865.1:ENST00000533572.6:ENST00000345125.8:ENST00000526645.6:ENST00000534149.6:ENST00000505496.7:ENST00000532392.2:ENST00000676843.1:ENST00000524500.6:ENST00000525076.6:ENST00000527215.7:ENST00000528965.2:ENST00000532656.7:ENST00000532409.6:ENST00000526195.6:ENST00000678615.1:ENST00000527243.6:ENST00000530296.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	15	146	2	1.50641	2.095335	2.68426	0.0121549	6.27248e-4	0.096419	0.0230267
chr1	160314425	160314525	572023	0	-	0.45	(0.44,0.476]	chr1	69340	3	SS3_PROX	SS3_PROX:INTRON	COPA	ENSG00000122218.17	ENST00000241704.8:ENST00000696204.1:ENST00000696203.1:ENST00000696202.1:ENST00000649963.1:ENST00000696208.1:ENST00000696207.1:ENST00000696206.1:ENST00000649676.1:ENST00000368069.7:ENST00000647693.1:ENST00000649787.1:ENST00000650154.1:ENST00000647799.1:ENST00000648805.1:ENST00000647683.1:ENST00000649231.1:ENST00000648501.1:ENST00000696209.1:ENST00000696210.1:ENST00000696211.1:ENST00000647899.1:ENST00000696212.1:ENST00000696214.1:ENST00000696213.1:ENST00000696215.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	52	2	1.44993	2.09528	2.74063	0.045367	0.0176095	0.164236	0.105143
chr3	172255839	172255939	1561719	0	+	0.47	(0.44,0.476]	chr3	161582	39	INTRON	INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000469491.5:ENST00000336824.8:ENST00000416957.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	52	2	1.44993	2.09528	2.74063	0.045367	0.0176095	0.164236	0.105143
chr9	36594871	36594971	4116694	0	+	0.35	(0.32,0.35]	chr9	375262	1	SS5_PROX	SS5_PROX:INTRON	MELK	ENSG00000165304.8	ENST00000543751.5:ENST00000536860.5:ENST00000541717.4:ENST00000536329.5:ENST00000627766.2:ENST00000298048.7:ENST00000536987.5:ENST00000545008.5:ENST00000495529.5:ENST00000489766.5:ENST00000625974.2:ENST00000487398.3:ENST00000626154.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	64	2	1.60297	2.09525	2.58753	0.0647328	0.00560122	0.179192	0.0678837
chr17	42270612	42270709	6772167	0	-	0.28866000000000003	(0.28,0.32]	chr17	666965	2	EXON_LNCRNA	EXON_LNCRNA:INTRON	STAT5B:ENSG00000236194	ENSG00000173757.10:ENSG00000236194.3	ENST00000293328.8:ENST00000468312.1:ENST00000415845.1:ENST00000597755.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	12	165	2	2.07551	2.0952200000000003	2.11493	0.00444267	0.003536	0.0591386	0.0546236
chr10	50414166	50414266	4618587	0	-	0.43	(0.408,0.44]	chr10	425422	695	INTRON	INTRON	SGMS1	ENSG00000198964.14	ENST00000429490.5:ENST00000361781.7:ENST00000619438.4:ENST00000492601.2:ENST00000609445.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	14	148	2	1.85874	2.095185	2.33163	0.00680022	4.88329e-4	0.071184	0.0199693
chr2	61478065	61478159	1130579	0	-	0.361702	(0.35,0.378]	chr2	121505	5	UTR3	UTR3:EXON_MRNA	XPO1	ENSG00000082898.19	ENST00000677110.1:ENST00000678113.1:ENST00000676553.1:ENST00000677556.1:ENST00000677814.1:ENST00000676771.1:ENST00000677803.1:ENST00000677239.1:ENST00000678790.1:ENST00000677928.1:ENST00000678182.1:ENST00000677150.1:ENST00000678172.1:ENST00000678360.1:ENST00000678081.1:ENST00000676889.1:ENST00000676783.1:ENST00000679035.1:ENST00000677422.1:ENST00000677417.1:ENST00000677813.1:ENST00000676999.1:ENST00000676667.1:ENST00000678263.1:ENST00000678877.1:ENST00000677933.1:ENST00000680228.1:ENST00000677289.1:ENST00000677190.1:ENST00000481073.6:ENST00000677476.1:ENST00000469337.2:ENST00000401558.7:ENST00000428210.5:ENST00000677290.1:ENST00000677850.1:ENST00000678640.1:ENST00000676778.1:ENST00000451765.6:ENST00000676789.1:ENST00000678741.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	24	268	2	1.31696	2.0951750000000002	2.87339	0.0240495	8.76218e-6	0.119884	0.00212811
chr6	160028954	160029049	3023571	0	+	0.421053	(0.408,0.44]	chr6	282043	13	INTRON	INTRON	IGF2R	ENSG00000197081.16	ENST00000676781.1:ENST00000677704.1:ENST00000356956.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	127	2	1.87871	2.095115	2.31152	0.00625147	0.00139382	0.0684077	0.0341355
chr8	129487921	129488021	4060155	0	-	0.34	(0.32,0.35]	chr8	369612	34	INTRON	INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1:ENST00000676273.1:ENST00000667643.1:ENST00000668791.1:ENST00000663716.1:ENST00000663572.1:ENST00000676148.1:ENST00000667962.1:ENST00000674877.1:ENST00000675316.1:ENST00000674656.1:ENST00000446592.7:ENST00000667341.1:ENST00000675186.1:ENST00000652971.1:ENST00000661447.1:ENST00000674863.1:ENST00000675498.1:ENST00000675527.1:ENST00000676108.1:ENST00000657647.1:ENST00000675589.1:ENST00000675913.1:ENST00000675109.1:ENST00000671632.1:ENST00000671311.1:ENST00000676099.1:ENST00000660652.1:ENST00000675522.1:ENST00000675183.1:ENST00000658861.1:ENST00000663991.1:ENST00000675044.1:ENST00000675435.1:ENST00000674639.1:ENST00000676069.1:ENST00000675532.1:ENST00000674762.1:ENST00000523151.6:ENST00000675948.1:ENST00000665364.1:ENST00000657251.1:ENST00000675166.1:ENST00000674883.1:ENST00000675867.1:ENST00000674580.1:ENST00000675393.1:ENST00000520048.1:ENST00000674906.1:ENST00000676030.1:ENST00000670588.1:ENST00000675072.1:ENST00000664936.1:ENST00000652914.1:ENST00000657069.1	lncRNA	lncRNA	lncRNA	lncRNA	7	96	2	1.88255	2.0951049999999998	2.30766	0.0269187	0.00406148	0.135288	0.0558167
chr14	81219194	81219294	5935884	0	-	0.5	(0.476,0.515]	chr14	564166	23	INTRON	INTRON	GTF2A1	ENSG00000165417.12	ENST00000553612.6:ENST00000298173.7:ENST00000434192.2:ENST00000556268.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	45	2	1.92984	2.09509	2.26034	0.0466474	0.0166235	0.151522	0.110511
chr15	41745755	41745854	6007727	0	+	0.494949	(0.476,0.515]	chr15	571723	22	INTRON	INTRON	MGA	ENSG00000174197.18	ENST00000545763.6:ENST00000570161.6:ENST00000566586.6:ENST00000219905.13:ENST00000564190.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	56	2	2.05714	2.09509	2.13304	0.024866	0.0156961	0.132101	0.101453
chr5	168578807	168578894	2770715	0	-	0.494253	(0.476,0.515]	chr5	260754	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PANK3	ENSG00000120137.7	ENST00000239231.7:ENST00000522176.1	protein_coding	protein_coding	protein_coding	protein_coding	4	45	2	1.92984	2.09509	2.26034	0.0466474	0.0166235	0.151522	0.110511
chr21	6988635	6988734	7425906	0	-	0.313131	(0.28,0.32]	chr21	757520	16	INTRON	INTRON	ENSG00000280018	ENSG00000280018.4	ENST00000623165.3	lncRNA	lncRNA	lncRNA	lncRNA	11	154	2	1.80728	2.09504	2.3828	0.0108259	0.00211988	0.0920575	0.0416934
chr10	77917134	77917234	4654698	0	-	0.52	(0.515,0.57]	chr10	428776	47	INTRON	INTRON	DLG5	ENSG00000151208.17	ENST00000372391.7	protein_coding	protein_coding	protein_coding	protein_coding	6	57	2	1.69407	2.095035	2.496	0.0459452	0.00225531	0.149888	0.0436331
chr17	30144010	30144109	6587662	0	+	0.323232	(0.32,0.35]	chr17	640563	159	INTRON	INTRON	NSRP1	ENSG00000126653.18	ENST00000540900.7:ENST00000612959.4:ENST00000247026.10:ENST00000577289.6:ENST00000584154.5:ENST00000394826.8:ENST00000475652.5:ENST00000584317.5:ENST00000583301.5:ENST00000585881.5:ENST00000467446.6:ENST00000580103.6:ENST00000581048.5:ENST00000588614.1:ENST00000589608.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	53	2	1.83416	2.095035	2.35591	0.0631198	0.0128129	0.176946	0.0990564
chr5	149538496	149538596	2750952	0	-	0.33	(0.32,0.35]	chr5	259082	66	INTRON	INTRON	CSNK1A1	ENSG00000113712.19	ENST00000261798.10:ENST00000377843.8:ENST00000657001.1:ENST00000515768.6:ENST00000606719.6:ENST00000657462.1:ENST00000661952.1:ENST00000504676.5:ENST00000515435.5:ENST00000662268.1:ENST00000657706.1:ENST00000670598.1:ENST00000523203.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	53	2	1.99307	2.094875	2.19668	0.04271	0.021398	0.148082	0.123719
chr10	75226270	75226369	4464499	0	+	0.393939	(0.378,0.408]	chr10	411844	35	INTRON	INTRON	VDAC2	ENSG00000165637.14	ENST00000543351.5:ENST00000298468.9:ENST00000332211.11:ENST00000313132.8	protein_coding	protein_coding	protein_coding	protein_coding	3	36	2	1.8252	2.09474	2.36428	0.0619563	0.0441088	0.174514	0.162255
chr21	36372073	36372173	7404231	0	+	0.39	(0.378,0.408]	chr21	754368	3	SS3_PROX	SS3_PROX:INTRON	MORC3	ENSG00000159256.13	ENST00000400485.6:ENST00000487909.5:ENST00000546482.5:ENST00000549948.5:ENST00000551788.5:ENST00000551367.5:ENST00000552581.5:ENST00000547657.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	36	2	1.8252	2.09474	2.36428	0.0619563	0.0441088	0.174514	0.162255
chr8	30070359	30070459	3931272	0	-	0.38	(0.378,0.408]	chr8	360081	3	SS3_PROX	SS3_PROX:INTRON	SARAF	ENSG00000133872.14	ENST00000256255.11:ENST00000545648.2:ENST00000518174.5:ENST00000521265.5:ENST00000520303.5:ENST00000518340.1:ENST00000522794.1:ENST00000522055.1:ENST00000523761.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	36	2	1.8252	2.09474	2.36428	0.0619563	0.0441088	0.174514	0.162255
chr1	86929293	86929393	153739	0	+	0.37	(0.35,0.378]	chr1	16952	131	INTRON	INTRON	HS2ST1	ENSG00000153936.18	ENST00000370550.10:ENST00000370551.8:ENST00000687893.1:ENST00000693745.1:ENST00000689904.1:ENST00000690674.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	44	2	1.65083	2.0946949999999998	2.53856	0.0521072	0.0326077	0.177022	0.133687
chr10	45979558	45979657	4430453	0	+	0.373737	(0.35,0.378]	chr10	408468	37	INTRON	INTRON	TIMM23	ENSG00000265354.4	ENST00000580018.4	protein_coding	protein_coding	protein_coding	protein_coding	4	44	2	1.65083	2.0946949999999998	2.53856	0.0521072	0.0326077	0.177022	0.133687
chr11	72068617	72068717	4976720	0	-	0.37	(0.35,0.378]	chr11	470143	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	NUMA1	ENSG00000137497.19	ENST00000393695.8:ENST00000358965.10:ENST00000351960.10:ENST00000613205.4:ENST00000537217.5:ENST00000540843.5:ENST00000534987.5:ENST00000543937.5:ENST00000535087.5:ENST00000368959.9:ENST00000541719.5:ENST00000366394.7:ENST00000541641.5:ENST00000537905.5:ENST00000535111.5:ENST00000535838.5:ENST00000546131.1:ENST00000543450.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	44	2	1.65083	2.0946949999999998	2.53856	0.0521072	0.0326077	0.177022	0.133687
chr16	18157173	18157273	6454206	0	-	0.43	(0.408,0.44]	chr16	621964	57	INTRON	INTRON	ENSG00000260242	ENSG00000260242.1	ENST00000563866.1	lncRNA	lncRNA	lncRNA	lncRNA	6	63	2	1.44993	2.09467	2.73941	0.0638951	0.002744	0.177824	0.0484022
chr6	12043639	12043739	2814542	0	+	0.48	(0.476,0.515]	chr6	264800	45	INTRON	INTRON	HIVEP1	ENSG00000095951.17	ENST00000491710.5:ENST00000487103.5:ENST00000379388.7:ENST00000627968.2:ENST00000541134.5:ENST00000442081.6:ENST00000478545.1	protein_coding	protein_coding	protein_coding	protein_coding	10	104	2	2.09066	2.09467	2.09868	0.00772252	0.00250696	0.0756858	0.0464713
chr10	21681558	21681641	4405901	0	+	0.325301	(0.32,0.35]	chr10	406522	2	SS5_PROX	SS5_PROX:INTRON	MLLT10	ENSG00000078403.17	ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000651298.1:ENST00000377059.7:ENST00000651382.1:ENST00000438473.6:ENST00000420525.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	47	2	1.61669	2.09466	2.57263	0.0578816	0.0312297	0.188651	0.13151
chr19	5629571	5629670	7005361	0	+	0.343434	(0.32,0.35]	chr19	694957	27	INTRON	INTRON	SAFB	ENSG00000160633.13	ENST00000589863.5:ENST00000588852.2:ENST00000591666.5:ENST00000292123.9:ENST00000592224.5:ENST00000586934.5:ENST00000454510.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	47	2	1.61669	2.09466	2.57263	0.0578816	0.0312297	0.188651	0.13151
chr10	835017	835115	4541606	0	-	0.336735	(0.32,0.35]	chr10	419243	37	INTRON	INTRON	LARP4B	ENSG00000107929.16	ENST00000688365.1:ENST00000316157.8:ENST00000690516.1:ENST00000689323.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	152	2	2.00211	2.09465	2.18719	0.00445465	0.00282307	0.0610799	0.0472361
chr2	9608571	9608671	1064757	0	-	0.35	(0.32,0.35]	chr2	113598	167	INTRON	INTRON	YWHAQ	ENSG00000134308.14	ENST00000238081.8:ENST00000381844.8:ENST00000474715.1:ENST00000446619.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	48	2	1.88255	2.09464	2.30673	0.0584434	0.0269187	0.167723	0.135288
chr12	62265682	62265782	5149601	0	+	0.46	(0.44,0.476]	chr12	487283	48	INTRON	INTRON	USP15	ENSG00000135655.16	ENST00000353364.7:ENST00000549523.5:ENST00000550632.5:ENST00000312635.10:ENST00000548524.5:ENST00000280377.10:ENST00000551206.5:ENST00000546718.5:ENST00000537297.2:ENST00000549237.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	10	101	2	1.32393	2.09457	2.86521	0.0439888	5.69284e-4	0.162255	0.0220462
chr10	3162140	3162234	4542983	0	-	0.393617	(0.378,0.408]	chr10	419455	15	INTRON	INTRON	PITRM1	ENSG00000107959.17	ENST00000224949.9:ENST00000380989.6:ENST00000451104.6:ENST00000677384.1:ENST00000679309.1:ENST00000678403.1:ENST00000380994.6:ENST00000678855.1:ENST00000678436.1:ENST00000677817.1:ENST00000677305.1:ENST00000678986.1:ENST00000677001.1:ENST00000678987.1:ENST00000678601.1:ENST00000676953.1:ENST00000676519.1:ENST00000678050.1:ENST00000678370.1:ENST00000677922.1:ENST00000678441.1:ENST00000679134.1:ENST00000677598.1:ENST00000678539.1:ENST00000679210.1:ENST00000430362.2:ENST00000678663.1:ENST00000678972.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	57	2	2.00398	2.09455	2.18512	0.0393906	0.00902136	0.143072	0.0851259
chr15	56937687	56937787	6032302	0	+	0.34	(0.32,0.35]	chr15	574663	162	INTRON	INTRON	TCF12	ENSG00000140262.18	ENST00000438423.6:ENST00000267811.9:ENST00000333725.10:ENST00000560190.5:ENST00000559609.5:ENST00000558908.5:ENST00000557843.5:ENST00000557947.5:ENST00000561152.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	54	2	1.49965	2.09443	2.68921	0.0542985	0.0230336	0.182243	0.118056
chr4	55419454	55419553	1960834	0	+	0.363636	(0.35,0.378]	chr4	196577	9	INTRON	INTRON	TMEM165	ENSG00000134851.13	ENST00000381334.10:ENST00000506198.5:ENST00000508404.5:ENST00000514904.5:ENST00000508561.5:ENST00000608091.1:ENST00000509575.1:ENST00000506103.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	16	179	2	2.09147	2.09443	2.09739	0.00380443	8.33047e-4	0.0542786	0.0263691
chr7	74660167	74660267	3335271	0	+	0.47	(0.44,0.476]	chr7	310340	17	INTRON	INTRON	GTF2I	ENSG00000263001.8	ENST00000650807.1:ENST00000690345.1:ENST00000613513.1:ENST00000573035.6:ENST00000614986.4:ENST00000620879.4:ENST00000621734.4:ENST00000443166.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	64	2	1.79873	2.09438	2.39003	0.0223888	0.0106488	0.116918	0.0915714
chr1	1220666	1220764	358862	0	-	0.520408	(0.515,0.57]	chr1	41399	18	EXON_MRNA	EXON_MRNA:INTRON	SDF4	ENSG00000078808.19	ENST00000660930.1:ENST00000465727.5:ENST00000263741.12:ENST00000360001.12:ENST00000494748.1:ENST00000403997.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	29	2	1.94945	2.0943	2.23915	0.0596178	0.0414068	0.16883600000000001	0.161557
chr5	69916755	69916854	2382171	0	+	0.555556	(0.515,0.57]	chr5	229562	1	INTRON	INTRON	GUSBP13	ENSG00000198237.8	ENST00000506490.2	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	3	29	2	1.94945	2.0943	2.23915	0.0596178	0.0414068	0.16883600000000001	0.161557
chr5	146212301	146212401	2514201	0	+	0.57	(0.515,0.57]	chr5	240152	81	INTRON	INTRON	ENSG00000275740:RBM27	ENSG00000275740.1:ENSG00000091009.8	ENST00000506502.2:ENST00000265271.7	protein_coding	protein_coding	protein_coding	protein_coding	3	29	2	1.94945	2.0943	2.23915	0.0596178	0.0414068	0.16883600000000001	0.161557
chr10	71825054	71825148	4642570	0	-	0.468085	(0.44,0.476]	chr10	427142	8	INTRON	INTRON	PSAP	ENSG00000197746.15	ENST00000394936.8:ENST00000633965.1	protein_coding	protein_coding	protein_coding	protein_coding	14	134	2	1.77765	2.094295	2.41094	0.0039859	0.00205841	0.057767	0.0409869
chr15	43847421	43847520	6012845	0	+	0.535354	(0.515,0.57]	chr15	572788	30	INTRON	INTRON	WDR76	ENSG00000092470.12	ENST00000381246.6:ENST00000263795.11	protein_coding	protein_coding	protein_coding	protein_coding	5	48	2	1.60221	2.094225	2.58624	0.0581855	0.00526399	0.188704	0.0633874
chr7	101824674	101824774	3366435	0	+	0.43	(0.408,0.44]	chr7	315215	53	INTRON	INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000497815.5:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000607092.1:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000558469.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	63	2	1.96973	2.09415	2.21857	0.0209591	0.0108773	0.112046	0.0923273
chr12	121327428	121327526	5436925	0	-	0.591837	(0.57,1]	chr12	519876	3	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	ANAPC5	ENSG00000089053.13	ENST00000261819.8:ENST00000535641.5:ENST00000541887.5:ENST00000534976.5:ENST00000441917.6:ENST00000539079.5:ENST00000544314.5:ENST00000535482.1:ENST00000545218.5:ENST00000535472.5:ENST00000538334.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	29	2	2.02391	2.094105	2.1643	0.0339274	0.00941704	0.134508	0.0861183
chr12	22633663	22633763	5094827	0	+	0.3	(0.28,0.32]	chr12	481224	76	INTRON	INTRON	ETNK1	ENSG00000139163.16	ENST00000671733.1:ENST00000335148.8:ENST00000672951.1:ENST00000266517.9:ENST00000538218.2:ENST00000673496.1:ENST00000673406.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	72	2	1.31424	2.09403	2.87382	0.0580847	0.014868	0.188651	0.0989021
chr11	70428157	70428255	4821928	0	+	0.438776	(0.408,0.44]	chr11	449656	24	INTRON	INTRON	CTTN	ENSG00000085733.16	ENST00000346329.7:ENST00000301843.13:ENST00000376561.7:ENST00000527962.5:ENST00000498223.3:ENST00000393747.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	66	2	1.96534	2.09401	2.22268	0.0216499	0.00770925	0.11491	0.0784002
chr20	47313881	47313981	7349082	0	-	0.42	(0.408,0.44]	chr20	749342	33	INTRON	INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000468376.2:ENST00000435836.5:ENST00000446894.5:ENST00000441977.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	55	2	1.74108	2.09391	2.44674	0.0424099	0.00868283	0.148082	0.0842798
chr16	30238791	30238891	6472490	0	-	0.53	(0.515,0.57]	chr16	625545	1	SS5_PROX	SS5_PROX:INTRON	NPIPB13	ENSG00000198064.14	ENST00000520915.5:ENST00000618637.1:ENST00000568053.5:ENST00000564502.1:ENST00000564219.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	47	2	2.01737	2.09388	2.17039	0.0352218	0.00900252	0.137535	0.0851009
chr14	73102137	73102232	5784529	0	+	0.273684	[0,0.28]	chr14	547874	11	EXON_MRNA	EXON_MRNA:INTRON	RBM25	ENSG00000119707.14	ENST00000527432.5:ENST00000261973.12:ENST00000532683.5:ENST00000528081.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	66	2	1.85666	2.093815	2.33097	0.0660997	0.0158969	0.181924	0.109464
chr1	179959027	179959126	267478	0	+	0.20202	[0,0.28]	chr1	31297	35	INTRON	INTRON	CEP350	ENSG00000135837.16	ENST00000491495.2:ENST00000367607.8	protein_coding	protein_coding	protein_coding	protein_coding	4	66	2	1.94204	2.09375	2.24546	0.0544139	0.0206502	0.164972	0.122348
chr3	143003457	143003556	1529091	0	+	0.242424	[0,0.28]	chr3	159324	7	INTRON	INTRON	U2SURP	ENSG00000163714.18	ENST00000600150.5:ENST00000488497.7:ENST00000493782.5:ENST00000473835.7:ENST00000461591.5:ENST00000493598.6:ENST00000463563.6:ENST00000470400.5:ENST00000465175.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	66	2	1.94204	2.09375	2.24546	0.0544139	0.0206502	0.164972	0.122348
chr14	67961110	67961210	5766787	0	+	0.5	(0.476,0.515]	chr14	547062	519	INTRON	INTRON	RAD51B	ENSG00000182185.19	ENST00000487861.5:ENST00000471583.6:ENST00000479335.5:ENST00000487270.5:ENST00000488612.5:ENST00000553595.5:ENST00000497460.5:ENST00000492236.5:ENST00000554244.5:ENST00000478014.5:ENST00000469165.6:ENST00000460526.5:ENST00000468382.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	60	2	1.8388	2.0937349999999997	2.34867	0.0564473	0.00539703	0.184423	0.0644048
chr1	45516984	45517081	439696	0	-	0.371134	(0.35,0.378]	chr1	53263	8	INTRON	INTRON	PRDX1	ENSG00000117450.15	ENST00000676549.1:ENST00000424390.2:ENST00000447184.6:ENST00000262746.5:ENST00000319248.13:ENST00000372079.1	protein_coding	protein_coding	protein_coding	protein_coding	9	100	2	1.43939	2.09373	2.74807	0.0418517	8.09805e-4	0.147271	0.0259453
chr1	145824175	145824272	210630	0	+	0.618557	(0.57,1]	chr1	23014	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	POLR3C	ENSG00000186141.9	ENST00000471254.5:ENST00000369294.5:ENST00000334163.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	29	2	1.67986	2.09364	2.50742	0.0496395	0.00631173	0.174685	0.0687526
chr10	73777752	73777847	4454107	0	+	0.578947	(0.57,1]	chr10	411177	17	INTRON	INTRON	FUT11	ENSG00000196968.11	ENST00000489264.2	protein_coding	processed_transcript	protein_coding	processed_transcript	5	29	2	1.67986	2.09364	2.50742	0.0496395	0.00631173	0.174685	0.0687526
chr3	185606898	185606998	1585487	0	+	0.15	[0,0.28]	chr3	164150	4	SS5_PROX	SS5_PROX:INTRON	SENP2	ENSG00000163904.13	ENST00000430355.5:ENST00000453532.5:ENST00000296257.10:ENST00000413407.5:ENST00000473760.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	81	2	1.75741	2.093595	2.42978	0.0424454	0.0149657	0.161763	0.0994339
chr14	55176961	55177061	5900359	0	-	0.26	[0,0.28]	chr14	560447	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	DLGAP5	ENSG00000126787.13	ENST00000395425.6:ENST00000247191.7	protein_coding	protein_coding	protein_coding	protein_coding	4	59	2	1.79953	2.09355	2.38757	0.0552962	0.0377477	0.165463	0.156608
chr16	47464093	47464193	6343329	0	+	0.47	(0.44,0.476]	chr16	608848	1	SS5_PROX	SS5_PROX:INTRON	PHKB	ENSG00000102893.17	ENST00000566037.6:ENST00000566044.5:ENST00000299167.12:ENST00000696809.1:ENST00000323584.10:ENST00000565424.2:ENST00000567402.5:ENST00000563376.5:ENST00000564873.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	55	2	1.96602	2.093525	2.22103	0.0426807	0.00776319	0.148082	0.0787356
chr17	31952076	31952176	6595828	0	+	0.54	(0.515,0.57]	chr17	641554	40	INTRON	INTRON	SUZ12	ENSG00000178691.11	ENST00000322652.10:ENST00000580398.1	protein_coding	protein_coding	protein_coding	protein_coding	5	47	2	1.7492	2.093515	2.43783	0.0382504	0.00916404	0.15832	0.0812949
chr19	29962347	29962446	7047755	0	+	0.191919	[0,0.28]	chr19	702663	39	INTRON	INTRON	URI1	ENSG00000105176.18	ENST00000360605.8:ENST00000570564.5:ENST00000574233.5:ENST00000392271.6:ENST00000574110.5:ENST00000574666.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	80	2	2.02265	2.093505	2.16436	0.0449017	0.0120935	0.149888	0.0962599
chr17	42306724	42306812	6611220	0	+	0.454545	(0.44,0.476]	chr17	644034	3	SS5_PROX	SS5_PROX:INTRON	STAT5A	ENSG00000126561.18	ENST00000345506.8:ENST00000546010.6:ENST00000677893.1:ENST00000676631.1:ENST00000590726.7:ENST00000678903.1:ENST00000590949.6:ENST00000676585.1:ENST00000588868.5:ENST00000677301.1:ENST00000468096.5:ENST00000591556.1:ENST00000587646.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	104	2	1.4962	2.093495	2.69079	0.0392301	5.45672e-4	0.161534	0.0215454
chr5	32168950	32169050	2597462	0	-	0.42	(0.408,0.44]	chr5	246744	247	INTRON	INTRON	GOLPH3	ENSG00000113384.14	ENST00000265070.7:ENST00000503610.5:ENST00000512668.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	27	281	2	1.86741	2.09349	2.31957	0.00228407	8.34678e-5	0.0426928	0.00769723
chr4	82820340	82820438	2179356	0	-	0.377551	(0.35,0.378]	chr4	214237	7	INTRON	INTRON	SEC31A	ENSG00000138674.17	ENST00000395310.7:ENST00000513858.5:ENST00000348405.8:ENST00000503937.5:ENST00000448323.5:ENST00000311785.11:ENST00000509142.5:ENST00000443462.6:ENST00000500777.6:ENST00000505472.5:ENST00000355196.6:ENST00000508502.5:ENST00000515062.5:ENST00000264405.9:ENST00000505479.1:ENST00000505984.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	62	2	1.34988	2.093485	2.83709	0.0498069	0.01435	0.17488	0.0966737
chr11	65441745	65441845	4805960	0	+	0.39	(0.378,0.408]	chr11	446554	191	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	131	1370	2	2.04935	2.09341	2.13747	1.04608e-4	4.76707e-5	0.00920478	0.00563886
chr17	38853697	38853710	6765144	0	-	0.538462	(0.515,0.57]	chr17	665410	1	CDS_START	CDS_START:CDS:EXON_MRNA	RPL23	ENSG00000125691.14	ENST00000479035.7:ENST00000394333.5:ENST00000394332.5:ENST00000584912.5:ENST00000577407.5:ENST00000577760.1:ENST00000584056.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	64	2	1.94248	2.093405	2.24433	0.0115668	0.00725078	0.0962115	0.072984
chr1	230089289	230089389	334299	0	+	0.54	(0.515,0.57]	chr1	38926	215	INTRON	INTRON	GALNT2	ENSG00000143641.10	ENST00000494106.1:ENST00000366672.5:ENST00000488903.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	64	2	1.82142	2.0933800000000002	2.36534	0.0191173	0.00404547	0.108861	0.0578376
chr1	32665230	32665330	65972	0	+	0.26	[0,0.28]	chr1	8429	25	INTRON	INTRON	RBBP4	ENSG00000162521.19	ENST00000414241.7:ENST00000527118.5:ENST00000373493.10:ENST00000401893.7:ENST00000524393.5:ENST00000492348.6:ENST00000526193.5:ENST00000373485.5:ENST00000477563.6:ENST00000458695.6:ENST00000445722.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	111	2	1.58141	2.093365	2.60532	0.0540605	0.00226845	0.164565	0.0437013
chr11	46839031	46839130	4948694	0	-	0.222222	[0,0.28]	chr11	463857	123	INTRON	INTRON	CKAP5	ENSG00000175216.15	ENST00000529230.6:ENST00000312055.9:ENST00000525248.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	69	2	1.74425	2.0933349999999997	2.44242	0.0491024	0.0287343	0.155269	0.139835
chr6	143967929	143968024	3242831	0	-	0.231579	[0,0.28]	chr6	301229	13	INTRON	INTRON	PLAGL1	ENSG00000118495.21	ENST00000649307.1:ENST00000674357.1:ENST00000360537.6:ENST00000437412.5:ENST00000444202.5:ENST00000416623.5:ENST00000354765.6:ENST00000649211.1:ENST00000625622.2:ENST00000650125.1:ENST00000647880.1:ENST00000417959.4:ENST00000647988.1:ENST00000628651.2:ENST00000626294.2:ENST00000626462.2:ENST00000627449.2:ENST00000626373.2:ENST00000629195.2:ENST00000626022.2:ENST00000628069.2:ENST00000628630.2:ENST00000629890.2:ENST00000631184.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	80	2	1.88025	2.09333	2.30641	0.029906	0.0213596	0.142135	0.113755
chr21	7440226	7440326	7365705	0	+	0.3	(0.28,0.32]	chr21	751728	90	INTRON	INTRON	ENSG00000276077	ENSG00000276077.4	ENST00000617062.4:ENST00000625096.3:ENST00000624791.1:ENST00000624907.3:ENST00000624461.3:ENST00000625115.1	lncRNA	lncRNA	lncRNA	lncRNA	5	71	2	1.71442	2.0932250000000003	2.47203	0.0454351	0.0114089	0.164236	0.0886611
chr10	3161766	3161859	4542979	0	-	0.301075	(0.28,0.32]	chr10	419455	11	INTRON	INTRON	PITRM1	ENSG00000107959.17	ENST00000224949.9:ENST00000380989.6:ENST00000451104.6:ENST00000677384.1:ENST00000679309.1:ENST00000678403.1:ENST00000380994.6:ENST00000678855.1:ENST00000678436.1:ENST00000677817.1:ENST00000677305.1:ENST00000678986.1:ENST00000677001.1:ENST00000678987.1:ENST00000678601.1:ENST00000676953.1:ENST00000676519.1:ENST00000678050.1:ENST00000678370.1:ENST00000677922.1:ENST00000678441.1:ENST00000679134.1:ENST00000677598.1:ENST00000678539.1:ENST00000679210.1:ENST00000430362.2:ENST00000678663.1:ENST00000678972.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	52	2	1.85772	2.093215	2.32871	0.0581621	0.0300199	0.167723	0.142135
chr2	15496980	15497080	1072517	0	-	0.31	(0.28,0.32]	chr2	114429	76	INTRON	INTRON	NBAS	ENSG00000151779.13	ENST00000281513.10:ENST00000427792.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	52	2	1.85772	2.093215	2.32871	0.0581621	0.0300199	0.167723	0.142135
chr3	25782804	25782872	1642839	0	-	0.455882	(0.44,0.476]	chr3	168693	2	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	NGLY1	ENSG00000151092.18	ENST00000280700.10:ENST00000428257.5:ENST00000675217.1:ENST00000676225.1:ENST00000493324.5:ENST00000396649.7:ENST00000308710.9:ENST00000280699.13:ENST00000674841.1:ENST00000675234.1:ENST00000463611.2:ENST00000417874.6:ENST00000427041.1:ENST00000461491.5:ENST00000474611.1:ENST00000478991.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	55	2	1.75627	2.093115	2.42996	0.0380723	0.0104804	0.157702	0.0855777
chr7	141742811	141742894	3440144	0	+	0.361446	(0.35,0.378]	chr7	320681	2	INTRON	INTRON	SSBP1	ENSG00000106028.11	ENST00000612337.4:ENST00000265304.11:ENST00000498107.5:ENST00000489378.5:ENST00000469123.5:ENST00000467681.5:ENST00000465582.5:ENST00000463093.5:ENST00000465167.1:ENST00000484178.5:ENST00000481508.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	61	2	1.95579	2.0931100000000002	2.23043	0.0234538	0.0187487	0.11867	0.117523
chr9	130585285	130585384	4213149	0	+	0.363636	(0.35,0.378]	chr9	386268	33	INTRON	INTRON	FUBP3	ENSG00000107164.16	ENST00000319725.10:ENST00000650723.1:ENST00000465949.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	50	2	2.04358	2.0931100000000002	2.14264	0.0329533	0.0274795	0.145171	0.123904
chr9	125333029	125333129	4198986	0	+	0.36	(0.35,0.378]	chr9	383236	4	SS5_PROX	SS5_PROX:INTRON	GAPVD1	ENSG00000165219.23	ENST00000497580.5:ENST00000297933.11:ENST00000470056.5:ENST00000394105.6:ENST00000394083.6:ENST00000495955.5:ENST00000467750.5:ENST00000394104.6:ENST00000312123.13:ENST00000431329.5:ENST00000436712.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	14	161	2	1.85916	2.09309	2.32702	0.00753423	5.65699e-4	0.0748659	0.0217348
chr22	19119531	19119630	7551986	0	-	0.515152	(0.476,0.515]	chr22	771903	297	INTRON	INTRON	DGCR2	ENSG00000070413.20	ENST00000537045.5:ENST00000545799.5:ENST00000263196.12:ENST00000389262.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	127	2	2.02162	2.09307	2.16452	0.00361279	0.00229906	0.055406	0.0428247
chr1	222622089	222622188	319391	0	+	0.50505	(0.476,0.515]	chr1	36616	4	INTRON	INTRON	MIA3	ENSG00000154305.18	ENST00000344922.10:ENST00000470521.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	46	2	1.91817	2.0930299999999997	2.26789	0.0459211	0.0176567	0.164984	0.105233
chr15	59027809	59027909	6039285	0	+	0.51	(0.476,0.515]	chr15	574979	233	INTRON	INTRON	RNF111	ENSG00000157450.16	ENST00000559757.1:ENST00000348370.9:ENST00000559160.1:ENST00000559209.5:ENST00000557998.5	protein_coding	protein_coding	protein_coding	protein_coding	4	46	2	1.91817	2.0930299999999997	2.26789	0.0459211	0.0176567	0.164984	0.105233
chr16	69701897	69701995	6381393	0	+	0.397959	(0.378,0.408]	chr16	613255	57	UTR3	UTR3:EXON_MRNA:INTRON	NFAT5	ENSG00000102908.22	ENST00000426654.6:ENST00000349945.7:ENST00000354436.6:ENST00000627621.3:ENST00000650987.1:ENST00000393742.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	78	2	2.04798	2.092975	2.13797	0.0124882	0.00809949	0.0923444	0.0808864
chr10	125091710	125091810	4713647	0	-	0.44	(0.408,0.44]	chr10	434903	30	INTRON	INTRON	CTBP2	ENSG00000175029.17	ENST00000337195.9:ENST00000411419.6:ENST00000494626.6:ENST00000531469.5:ENST00000460976.5:ENST00000476817.1:ENST00000530884.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	122	2	1.55898	2.0928050000000002	2.62663	0.0154752	7.7144e-4	0.108994	0.0255407
chr6	85627301	85627401	3151290	0	-	0.37	(0.35,0.378]	chr6	293889	28	INTRON	INTRON	ENSG00000271793:SYNCRIP	ENSG00000271793.2:ENSG00000135316.19	ENST00000682083.1:ENST00000683074.1:ENST00000681965.1:ENST00000682504.1:ENST00000682106.1:ENST00000683364.1:ENST00000683436.1:ENST00000684220.1:ENST00000683909.1:ENST00000684462.1:ENST00000616122.5:ENST00000678528.1:ENST00000676637.1:ENST00000677771.1:ENST00000355238.11:ENST00000678878.1:ENST00000677481.1:ENST00000677646.1:ENST00000676630.1:ENST00000678618.1:ENST00000676542.1:ENST00000677059.1:ENST00000444272.2:ENST00000678899.1:ENST00000369622.8:ENST00000678355.1:ENST00000676688.1:ENST00000677514.1:ENST00000678816.1:ENST00000678930.1:ENST00000678589.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	51	2	1.90405	2.09265	2.28125	0.0482651	0.0182271	0.171852	0.107842
chr11	62670588	62670681	4960528	0	-	0.569892	(0.515,0.57]	chr11	466657	7	UTR5	UTR5:EXON_MRNA:SS3_PROX:INTRON	LBHD1	ENSG00000162194.13	ENST00000354588.8:ENST00000431002.6:ENST00000532208.5:ENST00000415855.6:ENST00000527679.5:ENST00000524759.1:ENST00000526490.2:ENST00000528862.2:ENST00000377954.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	51	2	1.86007	2.0926400000000003	2.3252100000000002	0.0526611	0.00525266	0.178401	0.0633615
chr9	129837982	129838082	4210474	0	+	0.4	(0.378,0.408]	chr9	385867	20	INTRON	INTRON	USP20	ENSG00000136878.14	ENST00000491053.5:ENST00000494971.2:ENST00000372429.8:ENST00000315480.9:ENST00000358355.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	47	2	1.88729	2.092635	2.29798	0.0532327	0.0147606	0.162538	0.106702
chr4	899952	900052	2093962	0	-	0.61	(0.57,1]	chr4	206956	14	INTRON	INTRON	GAK	ENSG00000178950.18	ENST00000314167.9:ENST00000511163.5:ENST00000505819.5:ENST00000507580.5:ENST00000502656.5:ENST00000507991.1:ENST00000512325.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	24	2	1.9042	2.092615	2.28103	0.0476976	0.0151554	0.153019	0.108535
chr3	48080077	48080177	1687412	0	-	0.39	(0.378,0.408]	chr3	172280	638	INTRON	INTRON	MAP4	ENSG00000047849.22	ENST00000395734.7:ENST00000426837.6:ENST00000360240.10:ENST00000423088.5:ENST00000439356.2:ENST00000468075.2	protein_coding	protein_coding	protein_coding	protein_coding	4	47	2	1.94681	2.0925599999999998	2.23831	0.0457723	0.0179575	0.149888	0.114265
chr4	1954785	1954876	1911432	0	+	0.505495	(0.476,0.515]	chr4	191821	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NSD2	ENSG00000109685.19	ENST00000508803.6:ENST00000382891.9:ENST00000353275.9:ENST00000382892.6:ENST00000382895.7:ENST00000312087.10:ENST00000677559.1:ENST00000482415.6:ENST00000514329.5:ENST00000502425.5:ENST00000382888.3:ENST00000505643.5:ENST00000503207.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	54	2	1.96833	2.09255	2.21677	0.0207026	0.0195007	0.119967	0.110999
chr16	30317322	30317422	6473190	0	-	0.53	(0.515,0.57]	chr16	625713	110	INTRON	INTRON	SMG1P5	ENSG00000183604.15	ENST00000529428.5:ENST00000411546.4:ENST00000691460.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	4	35	2	1.7492	2.0925450000000003	2.43589	0.0382504	0.0370871	0.15832	0.139194
chr1	26705531	26705631	51266	0	+	0.4	(0.378,0.408]	chr1	6542	76	INTRON	INTRON	ARID1A	ENSG00000117713.21	ENST00000430799.7:ENST00000324856.13:ENST00000637465.1:ENST00000457599.6	protein_coding	protein_coding	protein_coding	protein_coding	10	111	2	1.76455	2.09251	2.42047	0.0180091	8.22744e-4	0.106756	0.026206
chr14	92806435	92806535	5807475	0	+	0.49	(0.476,0.515]	chr14	550412	3	SS3_PROX	SS3_PROX:INTRON	GOLGA5	ENSG00000066455.13	ENST00000163416.7	protein_coding	protein_coding	protein_coding	protein_coding	4	45	2	1.86492	2.092465	2.32001	0.0550347	0.0136217	0.165463	0.101682
chr10	50408673	50408772	4618532	0	-	0.535354	(0.515,0.57]	chr10	425422	640	INTRON	INTRON	SGMS1	ENSG00000198964.14	ENST00000429490.5:ENST00000361781.7:ENST00000619438.4:ENST00000492601.2:ENST00000609445.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	39	2	1.79136	2.092435	2.39351	0.0638444	0.0100431	0.177811	0.0881096
chr1	10526221	10526321	23491	0	+	0.49	(0.476,0.515]	chr1	2509	87	INTRON	INTRON	PEX14	ENSG00000142655.13	ENST00000472851.1:ENST00000356607.9:ENST00000491661.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	45	2	2.05154	2.09229	2.13304	0.0336015	0.024866	0.134145	0.132101
chr6	160013083	160013182	3023410	0	+	0.363636	(0.35,0.378]	chr6	282031	19	INTRON	INTRON	IGF2R	ENSG00000197081.16	ENST00000676781.1:ENST00000677704.1:ENST00000356956.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	54	2	1.9392	2.092275	2.24535	0.0647516	0.0126486	0.179192	0.0982897
chr1	54722087	54722174	108256	0	+	0.321839	(0.32,0.35]	chr1	14120	5	INTRON	INTRON	TTC4	ENSG00000243725.7	ENST00000371281.4:ENST00000371284.9	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	47	2	1.67393	2.09227	2.51061	0.0496128	0.0364463	0.174685	0.138959
chr5	32431069	32431168	2599192	0	-	0.323232	(0.32,0.35]	chr5	246966	106	INTRON	INTRON	ZFR	ENSG00000056097.16	ENST00000265069.13:ENST00000505366.1:ENST00000505204.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	47	2	1.67393	2.09227	2.51061	0.0496128	0.0364463	0.174685	0.138959
chr15	27202262	27202362	5984466	0	+	0.34	(0.32,0.35]	chr15	569164	1751	INTRON	INTRON	GABRG3	ENSG00000182256.13	ENST00000615808.5:ENST00000555083.5	protein_coding	protein_coding	protein_coding	protein_coding	3	39	2	1.95271	2.092265	2.23182	0.068598	0.0431213	0.184298	0.162255
chr2	148650046	148650146	891805	0	+	0.33	(0.32,0.35]	chr2	98781	41	INTRON	INTRON	EPC2	ENSG00000135999.12	ENST00000457184.5:ENST00000258484.11:ENST00000409654.5:ENST00000397424.2	protein_coding	protein_coding	protein_coding	protein_coding	3	39	2	1.95271	2.092265	2.23182	0.068598	0.0431213	0.184298	0.162255
chr6	42629851	42629951	2865729	0	+	0.35	(0.32,0.35]	chr6	271081	96	INTRON	INTRON	UBR2	ENSG00000024048.11	ENST00000372899.6:ENST00000372901.2	protein_coding	protein_coding	protein_coding	protein_coding	3	39	2	1.95271	2.092265	2.23182	0.068598	0.0431213	0.184298	0.162255
chr1	114744358	114744457	528497	0	-	0.424242	(0.408,0.44]	chr1	62335	23	INTRON	INTRON	CSDE1	ENSG00000009307.17	ENST00000339438.10:ENST00000610726.5:ENST00000692719.1:ENST00000358528.9:ENST00000688211.1:ENST00000438362.7:ENST00000689217.1:ENST00000689989.1:ENST00000686025.1:ENST00000686781.1:ENST00000686123.1:ENST00000684913.1:ENST00000686235.1:ENST00000693467.1:ENST00000689732.1:ENST00000693644.1:ENST00000687759.1:ENST00000692044.1:ENST00000689885.1:ENST00000691403.1:ENST00000692629.1:ENST00000690013.1:ENST00000690420.1:ENST00000692950.1:ENST00000686667.1:ENST00000691032.1:ENST00000685676.1:ENST00000529046.6:ENST00000692672.1:ENST00000691377.1:ENST00000688611.1:ENST00000690207.1:ENST00000693311.1:ENST00000689510.1:ENST00000686581.1:ENST00000689727.1:ENST00000690784.1:ENST00000483030.2:ENST00000687548.1:ENST00000261443.9:ENST00000530886.5:ENST00000369530.5:ENST00000534699.5:ENST00000524652.2:ENST00000525132.1:ENST00000534389.2:ENST00000525878.5:ENST00000525970.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	87	2	2.08621	2.0921950000000002	2.09818	0.00772939	0.00683843	0.0757122	0.0748032
chr11	125620810	125620909	4882928	0	+	0.333333	(0.32,0.35]	chr11	456536	1	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	STT3A	ENSG00000134910.14	ENST00000529196.5:ENST00000392708.9:ENST00000649491.1:ENST00000531491.5:ENST00000525946.5:ENST00000526364.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	32	352	2	1.76384	2.092175	2.42051	0.00143541	4.024e-4	0.0347139	0.0185763
chr6	57154645	57154744	2878724	0	+	0.323232	(0.32,0.35]	chr6	273319	2	INTRON	INTRON	ZNF451	ENSG00000112200.17	ENST00000357489.7:ENST00000370706.9:ENST00000504603.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	15	185	2	1.68833	2.092105	2.49588	0.0130252	2.50764e-4	0.093385	0.0140748
chr21	34874562	34874661	7447130	0	-	0.383838	(0.378,0.408]	chr21	759849	146	INTRON	INTRON	RUNX1	ENSG00000159216.19	ENST00000300305.7:ENST00000675419.1:ENST00000437180.5:ENST00000344691.8:ENST00000482318.5:ENST00000399240.5:ENST00000358356.9:ENST00000399237.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	42	2	1.72045	2.09209	2.46373	0.0424671	0.0382831	0.161763	0.141795
chr7	140462632	140462731	3661458	0	-	0.494949	(0.476,0.515]	chr7	339916	20	INTRON	INTRON	MKRN1	ENSG00000133606.11	ENST00000255977.7:ENST00000475010.5:ENST00000495305.5:ENST00000474576.5:ENST00000480552.5:ENST00000496169.5:ENST00000443720.6:ENST00000471104.5:ENST00000467513.5:ENST00000494939.1:ENST00000498535.1:ENST00000473444.1:ENST00000475180.5:ENST00000481705.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	91	2	1.34326	2.092075	2.84089	0.0529391	4.67054e-4	0.161923	0.0195793
chr7	107137657	107137756	3378100	0	+	0.434343	(0.408,0.44]	chr7	316264	90	INTRON	INTRON	PRKAR2B	ENSG00000005249.13	ENST00000265717.5:ENST00000393613.6:ENST00000488792.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	66	2	2.00629	2.092065	2.17784	0.0189661	0.00916282	0.108861	0.0855292
chr11	31481041	31481140	4938954	0	-	0.525253	(0.515,0.57]	chr11	462597	29	INTRON	INTRON	IMMP1L	ENSG00000148950.11	ENST00000532287.6:ENST00000534812.5:ENST00000526776.5:ENST00000278200.5:ENST00000648582.1:ENST00000533642.1:ENST00000527184.5:ENST00000528161.5:ENST00000532624.5:ENST00000529749.5:ENST00000530023.5:ENST00000531693.1:ENST00000532668.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	73	2	1.98329	2.09186	2.20043	0.0105419	0.00392045	0.0860389	0.0570863
chr8	11866201	11866301	3908846	0	-	0.53	(0.515,0.57]	chr8	358231	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	CTSB	ENSG00000164733.22	ENST00000677671.1:ENST00000678092.1:ENST00000679128.1:ENST00000677873.1:ENST00000676691.1:ENST00000678598.1:ENST00000353047.11:ENST00000677650.1:ENST00000526481.7:ENST00000676825.1:ENST00000678242.1:ENST00000677366.1:ENST00000677544.1:ENST00000530640.7:ENST00000677418.1:ENST00000677047.1:ENST00000676502.1:ENST00000531089.6:ENST00000678629.1:ENST00000678145.1:ENST00000678929.1:ENST00000677819.1:ENST00000677415.1:ENST00000678357.1:ENST00000676755.1:ENST00000679051.1:ENST00000453527.7:ENST00000678067.1:ENST00000679140.1:ENST00000677082.1:ENST00000533455.6:ENST00000531551.5:ENST00000534382.6:ENST00000679214.1:ENST00000531502.6:ENST00000534510.6:ENST00000677865.1:ENST00000533572.6:ENST00000345125.8:ENST00000526645.6:ENST00000534149.6:ENST00000505496.7:ENST00000532392.2:ENST00000676843.1:ENST00000524500.6:ENST00000525076.6:ENST00000527215.7:ENST00000528965.2:ENST00000532656.7:ENST00000526195.6:ENST00000527243.6:ENST00000530296.6:ENST00000534636.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	73	2	1.98329	2.09186	2.20043	0.0105419	0.00392045	0.0860389	0.0570863
chr12	116055886	116055986	5423325	0	-	0.35	(0.32,0.35]	chr12	518245	329	INTRON	INTRON	MED13L	ENSG00000123066.9	ENST00000281928.9:ENST00000650226.1:ENST00000648737.1:ENST00000548743.2:ENST00000647567.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	102	2	1.67688	2.091775	2.50667	0.0361676	0.00118337	0.138959	0.031662
chr1	186373158	186373258	604410	0	-	0.3	(0.28,0.32]	chr1	72190	4	SS5_PROX	SS5_PROX:INTRON	TPR	ENSG00000047410.14	ENST00000367478.9:ENST00000474852.1:ENST00000613151.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	69	2	1.72809	2.09177	2.45545	0.0438092	0.0197186	0.14901	0.120131
chr3	152299995	152300094	1535297	0	+	0.373737	(0.35,0.378]	chr3	159987	7	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	MBNL1	ENSG00000152601.18	ENST00000477171.1:ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000461436.1:ENST00000495875.6:ENST00000324210.10:ENST00000493459.5:ENST00000459747.1:ENST00000460591.5:ENST00000466565.1:ENST00000545754.5:ENST00000357472.7:ENST00000324196.9:ENST00000498502.5:ENST00000463374.5:ENST00000485910.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	24	273	2	2.00203	2.0915850000000002	2.18114	8.19668e-4	7.59428e-4	0.026165	0.0252363
chr4	32069976	32070075	1942148	0	+	0.383838	(0.378,0.408]	chr4	194727	718	INTRON	INTRON	LINC02506	ENSG00000251129.3	ENST00000662669.1:ENST00000665582.2:ENST00000667252.2:ENST00000660373.2:ENST00000684849.1:ENST00000513211.2:ENST00000659613.1:ENST00000657576.1:ENST00000686730.1:ENST00000685407.1:ENST00000685455.1:ENST00000655951.1	lncRNA	lncRNA	lncRNA	lncRNA	7	78	2	2.0102	2.09158	2.17296	0.0110512	0.00940766	0.0873897	0.0861183
chr5	131585795	131585895	2718676	0	-	0.48	(0.476,0.515]	chr5	255608	234	INTRON	INTRON	RAPGEF6	ENSG00000158987.22	ENST00000509018.6:ENST00000507093.5:ENST00000296859.10:ENST00000627212.2:ENST00000308008.10:ENST00000515170.5:ENST00000510071.5:ENST00000503398.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	54	2	1.91525	2.09157	2.26789	0.0232571	0.0176567	0.127416	0.105233
chr4	126506828	126506928	2235777	0	-	0.34	(0.32,0.35]	chr4	219023	413	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	7	81	2	1.6868	2.09145	2.4961	0.0217601	0.00967886	0.123836	0.0828038
chr14	102612418	102612518	5822731	0	+	0.52	(0.515,0.57]	chr14	552490	187	INTRON	INTRON	RCOR1	ENSG00000089902.10	ENST00000262241.7	protein_coding	protein_coding	protein_coding	protein_coding	7	64	2	1.68687	2.091435	2.496	0.0300837	0.00225531	0.129186	0.0436331
chr21	43889297	43889396	7414031	0	+	0.333333	(0.32,0.35]	chr21	755692	63	INTRON	INTRON	AGPAT3	ENSG00000160216.21	ENST00000291572.13:ENST00000448287.5:ENST00000398061.5	protein_coding	protein_coding	protein_coding	protein_coding	7	81	2	1.65179	2.09143	2.53107	0.0245569	0.00860484	0.131869	0.0784134
chr16	85560359	85560459	6415435	0	+	0.56	(0.515,0.57]	chr16	615470	36	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	7	59	2	1.59629	2.091265	2.58624	0.0274344	0.00526399	0.136554	0.0633874
chr2	27400922	27401022	1087214	0	-	0.5	(0.476,0.515]	chr2	116461	134	INTRON	INTRON	PPM1G	ENSG00000115241.11	ENST00000472077.1:ENST00000344034.5:ENST00000484925.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	52	2	1.48272	2.091195	2.69967	0.0410274	0.0195838	0.161534	0.109483
chr15	40182222	40182321	6001462	0	+	0.333333	(0.32,0.35]	chr15	570603	52	INTRON	INTRON	BUB1B	ENSG00000156970.13	ENST00000412359.7:ENST00000287598.11	protein_coding	protein_coding	protein_coding	protein_coding	4	53	2	1.77704	2.09117	2.4053	0.0719969	0.0108284	0.187322	0.0920575
chr8	42537063	42537156	3942537	0	-	0.451613	(0.44,0.476]	chr8	361333	2	INTRON	INTRON	SLC20A2	ENSG00000168575.10	ENST00000342228.7:ENST00000520179.5:ENST00000518717.1:ENST00000518384.1:ENST00000524237.1:ENST00000523340.1:ENST00000521455.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	75	2	1.83459	2.09117	2.34775	0.0198542	0.00466011	0.109608	0.0629753
chr11	85982094	85982185	5013949	0	-	0.296703	(0.28,0.32]	chr11	472933	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000530692.5:ENST00000630913.2:ENST00000529760.5:ENST00000528398.5:ENST00000532603.5:ENST00000356360.9:ENST00000529016.5:ENST00000526961.5:ENST00000530542.1:ENST00000534375.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	51	2	1.61031	2.09113	2.57195	0.0600513	0.0331711	0.190658	0.133994
chr13	42293499	42293599	5477471	0	+	0.31	(0.28,0.32]	chr13	524816	6	INTRON	INTRON	AKAP11	ENSG00000023516.9	ENST00000025301.4	protein_coding	protein_coding	protein_coding	protein_coding	4	51	2	1.61031	2.09113	2.57195	0.0600513	0.0331711	0.190658	0.133994
chr16	16510015	16510115	6310962	0	+	0.41	(0.408,0.44]	chr16	604098	100	INTRON	INTRON	ENSG00000260126	ENSG00000260126.2	ENST00000567465.2	lncRNA	lncRNA	lncRNA	lncRNA	27	273	2	1.71289	2.09112	2.46935	0.00224509	1.49217e-4	0.0435144	0.0111867
chr16	21878638	21878737	6462030	0	-	0.252525	[0,0.28]	chr16	623467	125	INTRON	INTRON	NPIPB4	ENSG00000185864.18	ENST00000543449.1:ENST00000538859.1	protein_coding	processed_transcript	protein_coding	processed_transcript	10	157	2	1.84107	2.09101	2.34095	0.0192797	0.00198013	0.108861	0.0411469
chr3	38246899	38246988	1399380	0	+	0.269663	[0,0.28]	chr3	146741	3	INTRON	INTRON	OXSR1	ENSG00000172939.9	ENST00000446845.5:ENST00000311806.8:ENST00000467900.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	67	2	1.49274	2.09096	2.68918	0.0592697	0.0275571	0.189982	0.123904
chr1	39486781	39486880	78861	0	+	0.484848	(0.476,0.515]	chr1	10235	11	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	MACF1	ENSG00000127603.32	ENST00000361689.7:ENST00000567887.5:ENST00000372915.8:ENST00000564288.6:ENST00000671089.2:ENST00000372925.6:ENST00000289893.8:ENST00000691623.1:ENST00000360115.8:ENST00000446276.5:ENST00000686657.1:ENST00000442046.5:ENST00000497807.1:ENST00000689726.1:ENST00000686687.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	65	2	1.97402	2.090955	2.20789	0.0206778	0.00820497	0.110999	0.081115
chrX	139920323	139920423	7905778	0	-	0.33	(0.32,0.35]	chrX	804457	882	INTRON	INTRON	ATP11C	ENSG00000101974.15	ENST00000370557.5:ENST00000682941.1:ENST00000485626.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	66	2	1.61669	2.090945	2.5652	0.0578816	0.00765724	0.188651	0.075364
chr16	16138658	16138758	6309684	0	+	0.43	(0.408,0.44]	chr16	603704	1	SS5_PROX	SS5_PROX:INTRON	ABCC1	ENSG00000103222.20	ENST00000678422.1:ENST00000677164.1:ENST00000399408.7:ENST00000572882.3:ENST00000399410.8:ENST00000676806.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	97	2	1.8937	2.090935	2.28817	0.00928733	0.00358507	0.0855292	0.0533855
chr12	91459940	91460039	5383815	0	-	0.323232	(0.32,0.35]	chr12	513479	602	INTRON	INTRON	ENSG00000289605	ENSG00000289605.1	ENST00000685093.1	lncRNA	lncRNA	lncRNA	lncRNA	4	53	2	2.04237	2.09091	2.13945	0.0375542	0.0254517	0.140222	0.133676
chr17	81684603	81684657	6690994	0	+	0.444444	(0.44,0.476]	chr17	654000	1	SS3_PROX	SS3_PROX:SS5_PROX:INTRON	HGS	ENSG00000185359.14	ENST00000677161.1:ENST00000678096.1:ENST00000679191.1:ENST00000676546.1:ENST00000678387.1:ENST00000679170.1:ENST00000677109.1:ENST00000677484.1:ENST00000678115.1:ENST00000677243.1:ENST00000677044.1:ENST00000679336.1:ENST00000678196.1:ENST00000676462.1:ENST00000576393.5:ENST00000576498.5:ENST00000678105.1:ENST00000676478.1:ENST00000329138.9:ENST00000676721.1:ENST00000677209.1:ENST00000677225.1:ENST00000678866.1:ENST00000679275.1:ENST00000678541.1:ENST00000676729.1:ENST00000572392.2:ENST00000677012.1:ENST00000577012.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	62	2	1.7965	2.090845	2.38519	0.0205549	0.012193	0.122348	0.0910127
chr5	113017047	113017146	2453800	0	+	0.393939	(0.378,0.408]	chr5	235130	37	UTR3	UTR3:EXON_MRNA	DCP2	ENSG00000172795.17	ENST00000515408.5:ENST00000389063.3	protein_coding	protein_coding	protein_coding	protein_coding	33	341	2	1.98327	2.090805	2.19834	5.16883e-4	3.44523e-4	0.0208967	0.0165103
chr8	102323795	102323895	4011853	0	-	0.49	(0.476,0.515]	chr8	367176	3	SS3_PROX	SS3_PROX:INTRON	UBR5	ENSG00000104517.13	ENST00000520539.6:ENST00000220959.8:ENST00000521922.5	protein_coding	protein_coding	protein_coding	protein_coding	6	62	2	1.91368	2.090785	2.26789	0.0176567	0.0135123	0.105233	0.101363
chr17	37041678	37041777	6603451	0	+	0.565657	(0.515,0.57]	chr17	642721	75	INTRON	INTRON	AATF	ENSG00000275700.6	ENST00000680340.1:ENST00000680356.1:ENST00000616434.2:ENST00000680579.1:ENST00000681800.1:ENST00000680330.1:ENST00000619387.5:ENST00000679997.1:ENST00000681062.1:ENST00000679881.1:ENST00000680782.1:ENST00000679600.1:ENST00000616392.1:ENST00000617141.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	58	2	1.81744	2.09072	2.364	0.031028	0.00447856	0.143457	0.0593175
chr14	89914708	89914808	5947711	0	-	0.51	(0.476,0.515]	chr14	564752	654	INTRON	INTRON	EFCAB11	ENSG00000140025.16	ENST00000316738.12:ENST00000555872.5:ENST00000557685.5:ENST00000556609.5:ENST00000553871.5:ENST00000556078.1:ENST00000556639.5:ENST00000555608.5:ENST00000550103.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	34	2	1.79693	2.090675	2.38442	0.0649782	0.0417472	0.179417	0.161736
chr19	11129050	11129150	7017237	0	+	0.48	(0.476,0.515]	chr19	697512	2	SS3_PROX	SS3_PROX:INTRON	LDLR	ENSG00000130164.14	ENST00000557933.5:ENST00000558518.6:ENST00000545707.5:ENST00000535915.5:ENST00000455727.6:ENST00000558013.5:ENST00000252444.9:ENST00000560628.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	34	2	1.79693	2.090675	2.38442	0.0649782	0.0417472	0.179417	0.161736
chr6	42067721	42067818	2864847	0	+	0.494845	(0.476,0.515]	chr6	270977	14	EXON_MRNA	EXON_MRNA:INTRON	TAF8	ENSG00000137413.17	ENST00000686935.1:ENST00000372982.8:ENST00000456846.6:ENST00000494547.5:ENST00000372977.8:ENST00000688562.1:ENST00000686229.1:ENST00000691805.1:ENST00000687601.1:ENST00000688007.1:ENST00000689833.1:ENST00000687266.1:ENST00000465926.5:ENST00000685500.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	34	2	1.79693	2.090675	2.38442	0.0649782	0.0417472	0.179417	0.161736
chr16	29589594	29589694	6471496	0	-	0.5	(0.476,0.515]	chr16	625297	199	INTRON	INTRON	ENSG00000288632:SMG1P2	ENSG00000288632.1:ENSG00000205534.6	ENST00000675579.1:ENST00000566127.1	lncRNA	lncRNA	lncRNA:transcribed_unprocessed_pseudogene	lncRNA:transcribed_unprocessed_pseudogene	7	76	2	1.73688	2.090645	2.44441	0.0252731	0.0036718	0.133676	0.0535094
chr20	385352	385452	7219042	0	+	0.47	(0.44,0.476]	chr20	733508	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	TRIB3	ENSG00000101255.12	ENST00000615226.4:ENST00000217233.9:ENST00000449710.5:ENST00000422053.3	protein_coding	protein_coding	protein_coding	protein_coding	9	101	2	1.71574	2.090625	2.46551	0.045256	3.60069e-4	0.149888	0.0169207
chr7	128503318	128503417	3407347	0	+	0.333333	(0.32,0.35]	chr7	318329	7	UTR3	UTR3:EXON_MRNA	METTL2B	ENSG00000165055.16	ENST00000262432.13:ENST00000480046.5	protein_coding	protein_coding	protein_coding	protein_coding	7	81	2	1.72098	2.090625	2.46027	0.0192903	0.0108973	0.119831	0.0873034
chr4	126643182	126643282	2237141	0	-	0.4	(0.378,0.408]	chr4	219023	1777	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	16	174	2	1.87761	2.09057	2.30353	0.00657764	3.02615e-4	0.0701901	0.0155054
chr1	113082131	113082231	188183	0	+	0.36	(0.35,0.378]	chr1	20854	81	INTRON	INTRON	LRIG2	ENSG00000198799.12	ENST00000361127.6	protein_coding	protein_coding	protein_coding	protein_coding	4	44	2	1.71046	2.090555	2.47065	0.0441269	0.0386172	0.162255	0.142656
chr11	57772917	57773017	4793242	0	+	0.37	(0.35,0.378]	chr11	443717	84	INTRON	INTRON	ENSG00000288534:CTNND1	ENSG00000288534.1:ENSG00000198561.16	ENST00000673781.1:ENST00000673810.1:ENST00000674116.1:ENST00000674060.1:ENST00000524630.5:ENST00000529919.5:ENST00000533189.1:ENST00000682741.1:ENST00000358694.10:ENST00000361332.8:ENST00000361391.10:ENST00000361796.9:ENST00000415361.6:ENST00000426142.6:ENST00000428599.6:ENST00000525902.5:ENST00000526357.5:ENST00000526772.5:ENST00000527467.5:ENST00000528232.5:ENST00000528621.5:ENST00000529526.5:ENST00000529873.5:ENST00000529986.5:ENST00000530094.5:ENST00000530748.5:ENST00000531014.5:ENST00000532245.5:ENST00000532463.5:ENST00000532649.5:ENST00000532787.5:ENST00000532844.5:ENST00000533667.5:ENST00000534579.5:ENST00000399050.10:ENST00000526938.5:ENST00000531007.2:ENST00000674015.1:ENST00000673826.1:ENST00000673683.1:ENST00000674106.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	44	2	1.71046	2.090555	2.47065	0.0441269	0.0386172	0.162255	0.142656
chr2	144462627	144462723	1241226	0	-	0.354167	(0.35,0.378]	chr2	131710	4	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	ZEB2	ENSG00000169554.23	ENST00000636471.1:ENST00000627532.3:ENST00000638128.1:ENST00000637304.1:ENST00000636179.1:ENST00000636820.1:ENST00000419938.5:ENST00000409487.7:ENST00000636732.2:ENST00000636026.2:ENST00000675069.1:ENST00000689298.1:ENST00000539609.7:ENST00000558170.6:ENST00000303660.8:ENST00000427902.5:ENST00000637267.2:ENST00000392861.6:ENST00000431672.4:ENST00000409211.5:ENST00000465308.5:ENST00000434448.5:ENST00000472146.5:ENST00000461784.3:ENST00000476394.5:ENST00000637591.2:ENST00000479735.1:ENST00000453352.5:ENST00000435831.5:ENST00000444559.5:ENST00000630572.2:ENST00000628473.1:ENST00000484313.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	44	2	1.71046	2.090555	2.47065	0.0441269	0.0386172	0.162255	0.142656
chr6	52274512	52274609	3105804	0	-	0.42268	(0.408,0.44]	chr6	290789	2	INTRON	INTRON	MCM3	ENSG00000112118.20	ENST00000616552.4:ENST00000229854.12:ENST00000596288.7:ENST00000419835.8	protein_coding	protein_coding	protein_coding	protein_coding	18	188	2	1.90168	2.09047	2.27926	0.00219337	9.96556e-4	0.0417893	0.0290732
chr2	126674810	126674910	862196	0	+	0.42	(0.408,0.44]	chr2	96613	162	INTRON	INTRON	GYPC	ENSG00000136732.16	ENST00000459787.1:ENST00000259254.9:ENST00000409836.3:ENST00000356887.12	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	55	2	1.53263	2.0904599999999998	2.64829	0.0733439	0.00400062	0.190051	0.057767
chr16	85480997	85481097	6414640	0	+	0.56	(0.515,0.57]	chr16	615465	1217	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	11	94	2	1.77044	2.09033	2.41022	0.00648165	0.00332441	0.0699952	0.0528673
chr7	12396672	12396772	3485369	0	-	0.46	(0.44,0.476]	chr7	325970	25	INTRON	INTRON	VWDE	ENSG00000146530.15	ENST00000275358.8:ENST00000452576.6:ENST00000521169.5:ENST00000326715.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	23	229	2	1.69023	2.09033	2.49043	0.00426409	1.29012e-4	0.0573912	0.00979177
chr2	174218344	174218444	1270551	0	-	0.33	(0.32,0.35]	chr2	134286	5	INTRON	INTRON	OLA1	ENSG00000138430.16	ENST00000284719.8:ENST00000344357.9:ENST00000428402.6:ENST00000409546.5	protein_coding	protein_coding	protein_coding	protein_coding	7	88	2	1.98909	2.0903	2.19151	0.0114722	0.0108865	0.0923273	0.0888882
chr16	8098722	8098822	6441496	0	-	0.46	(0.44,0.476]	chr16	620351	911	INTRON	INTRON	ENSG00000260289	ENSG00000260289.2	ENST00000670665.1:ENST00000654046.1:ENST00000567103.2	lncRNA	lncRNA	lncRNA	lncRNA	9	97	2	2.0592	2.09028	2.12136	0.00591413	0.00556585	0.0694038	0.0648867
chr2	202281362	202281460	985073	0	+	0.469388	(0.44,0.476]	chr2	105723	27	INTRON	INTRON	NOP58	ENSG00000055044.11	ENST00000488403.5:ENST00000426814.5:ENST00000264279.10:ENST00000472050.5:ENST00000467734.5:ENST00000492688.5:ENST00000478941.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	83	2	1.92621	2.090255	2.2543	0.00813281	0.00787184	0.0810802	0.076155
chr22	17649070	17649170	7475123	0	+	0.48	(0.476,0.515]	chr22	762152	98	INTRON	INTRON	BCL2L13	ENSG00000099968.18	ENST00000399781.5:ENST00000399782.5:ENST00000337612.9:ENST00000418951.6:ENST00000538149.5:ENST00000543133.5:ENST00000611738.4:ENST00000616863.4:ENST00000618481.4:ENST00000498133.5:ENST00000317582.10:ENST00000464649.1:ENST00000493680.5:ENST00000355028.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	55	2	1.68092	2.090165	2.49941	0.0474026	0.00811651	0.169265	0.0766625
chr7	23457379	23457479	3503536	0	-	0.51	(0.476,0.515]	chr7	326910	262	INTRON	INTRON	IGF2BP3	ENSG00000136231.14	ENST00000258729.8:ENST00000421467.6:ENST00000468263.5:ENST00000491719.5:ENST00000476938.5:ENST00000468005.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	23	236	2	1.82196	2.09008	2.3582	0.00304728	1.22793e-4	0.0493883	0.00949136
chr11	63710185	63710284	4800201	0	+	0.424242	(0.408,0.44]	chr11	444942	49	INTRON	INTRON	RTN3	ENSG00000133318.14	ENST00000341307.6:ENST00000356000.7:ENST00000542238.5:ENST00000538995.1:ENST00000339997.8:ENST00000540798.5:ENST00000537981.5:ENST00000377819.10:ENST00000536011.5:ENST00000543123.1:ENST00000543552.5:ENST00000545432.5:ENST00000338850.5:ENST00000354497.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	55	2	2.00228	2.0900600000000003	2.17784	0.0389732	0.00916282	0.143072	0.0855292
chr9	5695517	5695616	4097969	0	+	0.343434	(0.32,0.35]	chr9	373384	51	INTRON	INTRON	RIC1	ENSG00000107036.12	ENST00000251879.10:ENST00000414202.7:ENST00000418622.7:ENST00000545641.5	protein_coding	protein_coding	protein_coding	protein_coding	3	40	2	1.77704	2.0900600000000003	2.40308	0.0719969	0.0417732	0.187322	0.161736
chr1	109354366	109354448	520575	0	-	0.402439	(0.378,0.408]	chr1	61170	1	CDS	CDS:EXON_MRNA	SORT1	ENSG00000134243.12	ENST00000538502.5:ENST00000256637.8:ENST00000493736.5	protein_coding	protein_coding	protein_coding	protein_coding	3	35	2	2.04292	2.089975	2.13703	0.0797592	0.0326035	0.19979	0.145164
chr14	96870984	96871083	5811616	0	+	0.383838	(0.378,0.408]	chr14	551089	62	EXON_MRNA	EXON_MRNA:INTRON	VRK1	ENSG00000100749.9	ENST00000553683.2:ENST00000680538.1:ENST00000681195.1:ENST00000681524.1:ENST00000680084.1:ENST00000679533.1:ENST00000681598.1:ENST00000679727.1:ENST00000679758.1:ENST00000679977.1:ENST00000680387.1:ENST00000680335.1:ENST00000680683.1:ENST00000681474.1:ENST00000216639.8:ENST00000681363.1:ENST00000681538.1:ENST00000680922.1:ENST00000679903.1:ENST00000681101.1:ENST00000681419.1:ENST00000679941.1:ENST00000680849.1:ENST00000679770.1:ENST00000681493.1:ENST00000681778.1:ENST00000680993.1:ENST00000681355.1:ENST00000681695.1:ENST00000681344.1:ENST00000680007.1:ENST00000679918.1:ENST00000679816.1:ENST00000680756.1:ENST00000681249.1:ENST00000680526.1:ENST00000679365.1:ENST00000680851.1:ENST00000679506.1:ENST00000679650.1:ENST00000679462.1:ENST00000680724.1:ENST00000681061.1:ENST00000681677.1:ENST00000679843.1:ENST00000555067.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	35	2	2.04292	2.089975	2.13703	0.0797592	0.0326035	0.19979	0.145164
chr16	22451419	22451519	6322081	0	+	0.4	(0.378,0.408]	chr16	605300	4	SS3_PROX	SS3_PROX:INTRON	SMG1P1	ENSG00000237296.10	ENST00000446662.5:ENST00000381231.5:ENST00000309865.11:ENST00000691795.1:ENST00000308347.10:ENST00000687936.1:ENST00000691423.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	3	35	2	2.04292	2.089975	2.13703	0.0797592	0.0326035	0.19979	0.145164
chr7	26198715	26198810	3506220	0	-	0.357895	(0.35,0.378]	chr7	327191	10	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	HNRNPA2B1	ENSG00000122566.22	ENST00000679318.1:ENST00000677339.1:ENST00000678501.1:ENST00000676903.1:ENST00000608362.2:ENST00000677631.1:ENST00000676749.1:ENST00000677574.1:ENST00000679123.1:ENST00000677906.1:ENST00000476233.2:ENST00000677669.1:ENST00000677321.1:ENST00000678277.1:ENST00000677571.1:ENST00000679124.1:ENST00000676932.1:ENST00000678973.1:ENST00000678183.1:ENST00000679021.1:ENST00000678035.1:ENST00000677075.1:ENST00000678075.1:ENST00000678631.1:ENST00000678998.1:ENST00000490912.6:ENST00000354667.8:ENST00000618183.5:ENST00000677839.1:ENST00000677037.1:ENST00000678449.1:ENST00000679001.1:ENST00000678962.1:ENST00000676524.1:ENST00000678935.1:ENST00000678675.1:ENST00000676746.1:ENST00000356674.8:ENST00000678431.1:ENST00000678697.1:ENST00000678779.1:ENST00000676497.1:ENST00000677396.1:ENST00000360787.8:ENST00000679243.1:ENST00000677656.1:ENST00000463181.5:ENST00000678884.1:ENST00000495810.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	35	400	2	2.07673	2.0899349999999997	2.10314	5.08776e-4	3.16706e-4	0.020816	0.0159645
chr15	27195565	27195665	5984399	0	+	0.46	(0.44,0.476]	chr15	569164	1684	INTRON	INTRON	GABRG3	ENSG00000182256.13	ENST00000615808.5:ENST00000555083.5	protein_coding	protein_coding	protein_coding	protein_coding	10	106	2	2.03443	2.089875	2.14532	0.00616397	0.00311081	0.067653	0.0512673
chr4	1892563	1892663	1910782	0	+	0.54	(0.515,0.57]	chr4	191716	3	SS5_PROX	SS5_PROX:INTRON	NSD2	ENSG00000109685.19	ENST00000508803.6:ENST00000507820.5:ENST00000508355.5:ENST00000514045.5:ENST00000515806.1:ENST00000398261.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	47	2	1.91916	2.08964	2.26012	0.0231902	0.0160033	0.118148	0.109464
chr16	74579698	74579798	6525058	0	-	0.41	(0.408,0.44]	chr16	631842	165	INTRON	INTRON	GLG1	ENSG00000090863.12	ENST00000205061.9:ENST00000422840.7:ENST00000447066.6:ENST00000562090.5:ENST00000567951.5:ENST00000627032.2:ENST00000565260.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	97	2	1.54151	2.089495	2.63748	0.0368312	5.0683e-4	0.138959	0.0202328
chr3	198209970	198210070	1600264	0	+	0.48	(0.476,0.515]	chr3	165905	3	SS3_PROX	SS3_PROX:INTRON	FAM157A	ENSG00000236438.7	ENST00000634862.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	15	145	2	1.09927	2.089475	3.07968	0.057109	6.46383e-5	0.186375	0.00711194
chr13	45168607	45168707	5478759	0	+	0.48	(0.476,0.515]	chr13	524950	164	INTRON	INTRON	GTF2F2	ENSG00000188342.12	ENST00000340473.8	protein_coding	protein_coding	protein_coding	protein_coding	4	41	2	1.52615	2.089415	2.65268	0.0739267	0.0201975	0.190914	0.121243
chr7	105499929	105500029	3604635	0	-	0.51	(0.476,0.515]	chr7	336252	43	INTRON	INTRON	PUS7	ENSG00000091127.14	ENST00000481939.5:ENST00000469408.6:ENST00000356362.6:ENST00000482157.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	41	2	1.52615	2.089415	2.65268	0.0739267	0.0201975	0.190914	0.121243
chr22	21826738	21826838	7560977	0	-	0.42	(0.408,0.44]	chr22	773388	185	INTRON	INTRON	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	12	127	2	1.96803	2.089385	2.21074	0.00573171	0.0014216	0.0657377	0.0346633
chr10	32378493	32378569	4591965	0	-	0.381579	(0.378,0.408]	chr10	423400	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	EPC1	ENSG00000120616.16	ENST00000375110.6:ENST00000479380.2:ENST00000462470.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	66	2	1.51223	2.08933	2.66643	0.051139	0.00470023	0.176696	0.0600108
chr9	130787553	130787653	4214600	0	+	0.55	(0.515,0.57]	chr9	386427	727	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000393293.4	protein_coding	protein_coding	protein_coding	protein_coding	10	86	2	1.27738	2.089245	2.90111	0.0499863	3.57078e-4	0.17488	0.0175154
chr10	11946868	11946968	4556806	0	-	0.44	(0.408,0.44]	chr10	420540	33	INTRON	INTRON	UPF2	ENSG00000151461.20	ENST00000357604.10:ENST00000356352.6:ENST00000397053.6	protein_coding	protein_coding	protein_coding	protein_coding	4	41	2	1.81759	2.08916	2.36073	0.0481658	0.0316273	0.153019	0.144405
chr12	110045520	110045618	5408579	0	-	0.438776	(0.408,0.44]	chr12	516355	6	INTRON	INTRON	C12orf76	ENSG00000174456.16	ENST00000546651.3:ENST00000309050.9:ENST00000615315.2:ENST00000687999.1:ENST00000687036.1:ENST00000685920.1:ENST00000549724.3:ENST00000548936.1:ENST00000551185.2:ENST00000546627.1:ENST00000547573.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	41	2	1.81759	2.08916	2.36073	0.0481658	0.0316273	0.153019	0.144405
chr15	68088989	68089089	6056303	0	+	0.44	(0.408,0.44]	chr15	576567	7	INTRON	INTRON	PIAS1	ENSG00000033800.14	ENST00000564915.5:ENST00000249636.11:ENST00000562190.1:ENST00000545237.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	41	2	1.81759	2.08916	2.36073	0.0481658	0.0316273	0.153019	0.144405
chr20	32782792	32782890	7256860	0	+	0.428571	(0.408,0.44]	chr20	737132	10	INTRON	INTRON	DNMT3B	ENSG00000088305.19	ENST00000696232.1:ENST00000328111.6:ENST00000696231.1:ENST00000348286.6:ENST00000353855.6:ENST00000696233.1:ENST00000443239.7:ENST00000696234.1:ENST00000696235.1:ENST00000456297.6:ENST00000696236.1:ENST00000696237.1:ENST00000201963.3:ENST00000696238.1:ENST00000696239.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	41	2	1.81759	2.08916	2.36073	0.0481658	0.0316273	0.153019	0.144405
chr6	10760764	10760863	2810807	0	+	0.525253	(0.515,0.57]	chr6	264499	11	INTRON	INTRON	TMEM14B	ENSG00000137210.14	ENST00000463448.5:ENST00000473166.5:ENST00000460341.5:ENST00000473807.5:ENST00000463100.5:ENST00000478732.1:ENST00000467229.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	3	30	2	1.9459	2.089155	2.23241	0.0581268	0.0429089	0.188651	0.148082
chr14	30995568	30995668	5857565	0	-	0.3	(0.28,0.32]	chr14	556508	312	INTRON	INTRON	STRN3	ENSG00000196792.12	ENST00000355683.9:ENST00000357479.10:ENST00000555358.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	51	2	1.6633	2.0890899999999997	2.51488	0.0522231	0.0380957	0.177274	0.141678
chr6	85632481	85632581	3151342	0	-	0.3	(0.28,0.32]	chr6	293889	80	INTRON	INTRON	ENSG00000271793:SYNCRIP	ENSG00000271793.2:ENSG00000135316.19	ENST00000682083.1:ENST00000683074.1:ENST00000681965.1:ENST00000682504.1:ENST00000682106.1:ENST00000683364.1:ENST00000683436.1:ENST00000684220.1:ENST00000683909.1:ENST00000684462.1:ENST00000616122.5:ENST00000678528.1:ENST00000676637.1:ENST00000677771.1:ENST00000355238.11:ENST00000678878.1:ENST00000677481.1:ENST00000677646.1:ENST00000676630.1:ENST00000678618.1:ENST00000676542.1:ENST00000677059.1:ENST00000444272.2:ENST00000678899.1:ENST00000369622.8:ENST00000678355.1:ENST00000676688.1:ENST00000677514.1:ENST00000678816.1:ENST00000678930.1:ENST00000678589.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	12	142	2	1.47018	2.0889949999999997	2.70781	0.0213496	0.00185874	0.123639	0.0389941
chr1	11982037	11982114	26445	0	+	0.415584	(0.408,0.44]	chr1	3064	4	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	MFN2	ENSG00000116688.18	ENST00000444836.5:ENST00000674817.1:ENST00000675053.1:ENST00000675298.1:ENST00000675817.1:ENST00000675194.1:ENST00000676369.1:ENST00000412236.2:ENST00000675530.1:ENST00000674548.1:ENST00000675959.1:ENST00000675872.1:ENST00000676426.1:ENST00000674706.1:ENST00000674658.1:ENST00000674910.1:ENST00000675231.1:ENST00000490079.5:ENST00000484391.5:ENST00000497302.1:ENST00000235329.10:ENST00000676293.1:ENST00000675919.1:ENST00000675987.1:ENST00000675512.1:ENST00000675113.1:ENST00000675781.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	56	2	1.96534	2.08886	2.21238	0.0216499	0.0193525	0.119831	0.11491
chr10	21559917	21560017	4404671	0	+	0.38	(0.378,0.408]	chr10	406446	17	INTRON	INTRON	MLLT10	ENSG00000078403.17	ENST00000651097.1:ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000650772.1:ENST00000651298.1:ENST00000495130.5:ENST00000377059.7:ENST00000476557.5:ENST00000462999.5:ENST00000430455.2:ENST00000479634.1:ENST00000480415.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	78	2	1.64169	2.088855	2.53602	0.0377255	0.0020933	0.14078	0.0424943
chr8	9031588	9031686	3695853	0	+	0.346939	(0.32,0.35]	chr8	342942	17	UTR3	UTR3:EXON_MRNA:INTRON	ERI1	ENSG00000104626.15	ENST00000519292.5:ENST00000250263.8:ENST00000520332.5:ENST00000518663.1:ENST00000522612.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	81	2	1.57911	2.0888299999999997	2.59855	0.0313129	0.00682041	0.144381	0.0712518
chr22	21596156	21596256	7481989	0	+	0.4	(0.378,0.408]	chr22	763238	28	INTRON	INTRON	UBE2L3	ENSG00000185651.16	ENST00000458578.6:ENST00000545681.2:ENST00000696046.1:ENST00000342192.9:ENST00000496722.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	77	2	1.12252	2.08877	3.05502	0.0581283	0.00689519	0.188652	0.0717484
chr9	131400251	131400351	4217031	0	+	0.35	(0.32,0.35]	chr9	386720	56	INTRON	INTRON	PRRC2B	ENSG00000288701.1	ENST00000682525.1:ENST00000684596.1:ENST00000683519.1:ENST00000682501.1	protein_coding	protein_coding	protein_coding	protein_coding	9	108	2	1.56912	2.088725	2.60833	0.0247709	0.00240033	0.131869	0.0440612
chr17	29284992	29285091	6747705	0	-	0.535354	(0.515,0.57]	chr17	663228	171	INTRON	INTRON	NUFIP2	ENSG00000108256.9	ENST00000225388.9:ENST00000579665.1	protein_coding	protein_coding	protein_coding	protein_coding	5	40	2	1.56838	2.088685	2.60899	0.0424458	0.0232669	0.161763	0.118148
chr1	227068701	227068798	649200	0	-	0.216495	[0,0.28]	chr1	76988	1	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	CDC42BPA	ENSG00000143776.20	ENST00000366766.8:ENST00000366769.7:ENST00000334218.9:ENST00000366767.7:ENST00000448940.5:ENST00000442054.5:ENST00000366764.8:ENST00000441725.1:ENST00000684580.1:ENST00000488131.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	66	2	2.02265	2.08861	2.15457	0.0449017	0.0269306	0.149888	0.135288
chr6	13693986	13694086	3059047	0	-	0.44	(0.408,0.44]	chr6	284542	348	INTRON	INTRON	RANBP9	ENSG00000010017.13	ENST00000011619.6	protein_coding	protein_coding	protein_coding	protein_coding	22	223	2	2.07401	2.0885249999999997	2.10304	0.00200119	3.33642e-4	0.0407364	0.0162506
chr22	16606191	16606290	7473402	0	+	0.515152	(0.476,0.515]	chr22	761972	36	INTRON	INTRON	TPTEP1:ENSG00000283633	ENSG00000100181.22:ENSG00000283633.1	ENST00000558085.6:ENST00000400593.6:ENST00000592918.5:ENST00000592107.5:ENST00000426585.5:ENST00000591299.1	lncRNA	lncRNA	lncRNA:transcribed_unprocessed_pseudogene	lncRNA:processed_transcript	53	533	2	1.82626	2.0885100000000003	2.35076	5.04435e-4	5.47628e-5	0.0202328	0.00651589
chr3	186787034	186787126	1586129	0	+	0.358696	(0.35,0.378]	chr3	164288	3	EXON_MRNA	EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	EIF4A2	ENSG00000156976.17	ENST00000426808.5:ENST00000323963.10:ENST00000440191.6:ENST00000425053.5:ENST00000429589.5:ENST00000485101.5:ENST00000475653.5:ENST00000443963.5:ENST00000468362.5:ENST00000492144.5:ENST00000465792.1:ENST00000475409.1:ENST00000497177.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	55	2	1.60653	2.08851	2.57049	0.0427748	0.0262669	0.148082	0.133676
chr20	47216491	47216589	7348089	0	-	0.459184	(0.44,0.476]	chr20	749229	34	INTRON	INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000467200.6:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4	protein_coding	protein_coding	protein_coding	protein_coding	17	177	2	2.01816	2.08846	2.15876	0.00144784	0.00128332	0.0349151	0.0327461
chr17	31284525	31284625	6593087	0	+	0.51	(0.476,0.515]	chr17	641260	188	INTRON	INTRON	NF1	ENSG00000196712.20	ENST00000696138.1:ENST00000356175.7:ENST00000691014.1:ENST00000358273.9:ENST00000579081.5:ENST00000456735.6:ENST00000493220.5:ENST00000687863.1:ENST00000696140.1:ENST00000696141.1:ENST00000581113.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	54	2	1.69138	2.088445	2.48551	0.0481165	0.00756632	0.153019	0.0773151
chr3	5193328	5193426	1354237	0	+	0.469388	(0.44,0.476]	chr3	142413	39	INTRON	INTRON	EDEM1	ENSG00000134109.11	ENST00000434243.5:ENST00000256497.9:ENST00000465369.5:ENST00000465187.1:ENST00000445686.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	46	2	1.43625	2.08844	2.74063	0.063142	0.0176095	0.197183	0.105143
chr6	7123773	7123873	2798523	0	+	0.46	(0.44,0.476]	chr6	263723	147	INTRON	INTRON	RREB1	ENSG00000124782.21	ENST00000379933.7:ENST00000491191.5:ENST00000471433.5:ENST00000379938.7:ENST00000467782.5:ENST00000349384.10:ENST00000334984.10:ENST00000475946.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	46	2	1.43625	2.08844	2.74063	0.063142	0.0176095	0.197183	0.105143
chr5	79623051	79623151	2398836	0	+	0.28	[0,0.28]	chr5	231702	4	SS3_PROX	SS3_PROX:INTRON	TENT2	ENSG00000164329.14	ENST00000505571.5:ENST00000423041.6:ENST00000504233.5:ENST00000453514.6:ENST00000428308.6:ENST00000515807.5:ENST00000296783.7:ENST00000503620.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	91	2	1.87045	2.08843	2.30641	0.0213596	0.0191786	0.119771	0.113755
chr10	6155137	6155236	4386096	0	+	0.454545	(0.44,0.476]	chr10	404830	53	INTRON	INTRON	PFKFB3	ENSG00000170525.21	ENST00000379789.8:ENST00000536985.6	protein_coding	protein_coding	protein_coding	protein_coding	5	55	2	1.90381	2.088425	2.27304	0.0260626	0.0158915	0.122153	0.109464
chr7	12382940	12383035	3485226	0	-	0.242105	[0,0.28]	chr7	325947	19	INTRON	INTRON	VWDE	ENSG00000146530.15	ENST00000275358.8:ENST00000452576.6:ENST00000521169.5:ENST00000326715.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	93	2	1.68871	2.08842	2.48813	0.0406982	0.00953591	0.1451	0.0863913
chr19	2212311	2212386	6996674	0	+	0.453333	(0.44,0.476]	chr19	693509	2	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	DOT1L	ENSG00000104885.19	ENST00000398665.8:ENST00000686010.1:ENST00000591498.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	45	2	1.96602	2.088405	2.21079	0.0426807	0.0194581	0.148082	0.119831
chr7	66993848	66993917	3540203	0	-	0.449275	(0.44,0.476]	chr7	330306	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SBDS	ENSG00000126524.11	ENST00000246868.7:ENST00000414306.5:ENST00000490953.5:ENST00000463579.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	75	2	1.90372	2.08838	2.27304	0.0158915	0.0103521	0.109464	0.085045
chr2	95103278	95103375	1177426	0	-	0.329897	(0.32,0.35]	chr2	125626	17	EXON_MRNA	EXON_MRNA:INTRON	MRPS5	ENSG00000289685.1	ENST00000272418.7:ENST00000345084.10:ENST00000695437.1:ENST00000695436.1:ENST00000695435.1:ENST00000695434.1:ENST00000695433.1:ENST00000695432.1:ENST00000695439.1:ENST00000461916.6:ENST00000475895.6:ENST00000482568.1:ENST00000695440.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	60	2	1.37958	2.088325	2.79707	0.0577841	0.0170923	0.188484	0.104099
chr7	155661381	155661481	3452062	0	+	0.44	(0.408,0.44]	chr7	322642	161	INTRON	INTRON	RBM33	ENSG00000184863.11	ENST00000287912.7:ENST00000401878.8:ENST00000392759.7	protein_coding	protein_coding	protein_coding	protein_coding	8	84	2	1.47066	2.08826	2.70586	0.0457145	9.14702e-4	0.149888	0.027804
chr12	98516617	98516717	5198629	0	+	0.35	(0.32,0.35]	chr12	491794	1	SS5_PROX	SS5_PROX:INTRON	TMPO	ENSG00000120802.14	ENST00000548911.1:ENST00000556029.6:ENST00000343315.9:ENST00000266732.8:ENST00000393053.6:ENST00000546828.6:ENST00000261210.9:ENST00000549938.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	118	2	1.65179	2.0882300000000003	2.52467	0.0245569	0.00164175	0.131869	0.0369207
chr1	11082233	11082333	376713	0	-	0.41	(0.408,0.44]	chr1	44015	3	SS5_PROX	SS5_PROX:INTRON	EXOSC10	ENSG00000171824.14	ENST00000304457.11:ENST00000376936.9:ENST00000485606.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	63	2	1.60344	2.088195	2.57295	0.0387506	0.00640423	0.160156	0.0694534
chr17	81668836	81668931	6690918	0	+	0.410526	(0.408,0.44]	chr17	653965	6	INTRON	INTRON	CCDC137	ENSG00000185298.13	ENST00000329214.13:ENST00000575223.5:ENST00000574107.1:ENST00000574200.1:ENST00000571916.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	63	2	1.60344	2.088195	2.57295	0.0387506	0.00640423	0.160156	0.0694534
chr16	106457	106556	6425436	0	-	0.525253	(0.515,0.57]	chr16	617341	56	INTRON	INTRON	NPRL3	ENSG00000103148.17	ENST00000611875.5:ENST00000622194.4:ENST00000621703.4:ENST00000399953.7:ENST00000473674.5:ENST00000457916.5:ENST00000483663.5:ENST00000422814.5:ENST00000468260.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	56	2	1.811	2.08817	2.36534	0.0325989	0.00404547	0.133687	0.0578376
chr15	66645480	66645580	6051416	0	+	0.44	(0.408,0.44]	chr15	576221	629	INTRON	INTRON	LINC01169	ENSG00000259471.1	ENST00000558797.1	lncRNA	lncRNA	lncRNA	lncRNA	3	35	2	1.88062	2.0881600000000002	2.2957	0.0534548	0.0516458	0.176696	0.162935
chr3	14478065	14478165	1370169	0	+	0.44	(0.408,0.44]	chr3	144386	2	SS3_PROX	SS3_PROX:INTRON	SLC6A6	ENSG00000131389.18	ENST00000613060.4:ENST00000618278.4:ENST00000610642.4:ENST00000649500.1:ENST00000622186.5:ENST00000452151.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	35	2	1.88062	2.0881600000000002	2.2957	0.0534548	0.0516458	0.176696	0.162935
chr6	10908379	10908476	2811965	0	+	0.43299	(0.408,0.44]	chr6	264590	3	INTRON	INTRON	SYCP2L	ENSG00000153157.13	ENST00000341041.8:ENST00000283141.11:ENST00000543878.5:ENST00000487561.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	35	2	1.88062	2.0881600000000002	2.2957	0.0534548	0.0516458	0.176696	0.162935
chr6	126015390	126015489	2956361	0	+	0.414141	(0.408,0.44]	chr6	278045	19	INTRON	INTRON	TRMT11	ENSG00000066651.20	ENST00000479748.5:ENST00000368332.7:ENST00000648977.1:ENST00000334379.11:ENST00000466316.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	35	2	1.88062	2.0881600000000002	2.2957	0.0534548	0.0516458	0.176696	0.162935
chr6	89816513	89816612	3162007	0	-	0.30303	(0.28,0.32]	chr6	294886	126	INTRON	INTRON	MDN1	ENSG00000112159.12	ENST00000369393.8:ENST00000629399.2:ENST00000439638.1	protein_coding	protein_coding	protein_coding	protein_coding	8	110	2	1.81492	2.0881	2.36128	0.0253829	0.0025684	0.12011	0.0466761
chr14	58259472	58259569	5731055	0	+	0.494845	(0.476,0.515]	chr14	544100	11	INTRON	INTRON	PSMA3	ENSG00000100567.13	ENST00000216455.9:ENST00000554812.5:ENST00000557087.5:ENST00000555931.5:ENST00000412908.6:ENST00000555743.1:ENST00000557508.5:ENST00000553677.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	40	2	1.61586	2.088095	2.56033	0.0567093	0.0287634	0.185107	0.127066
chr8	102284826	102284926	4011428	0	-	0.5	(0.476,0.515]	chr8	367050	3	SS5_PROX	SS5_PROX:INTRON	UBR5	ENSG00000104517.13	ENST00000520539.6:ENST00000220959.8:ENST00000521922.5	protein_coding	protein_coding	protein_coding	protein_coding	4	40	2	1.61586	2.088095	2.56033	0.0567093	0.0287634	0.185107	0.127066
chrX	44952383	44952483	7649394	0	+	0.5	(0.476,0.515]	chrX	782726	780	INTRON	INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000675440.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000621147.5:ENST00000475233.1:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	40	2	1.61586	2.088095	2.56033	0.0567093	0.0287634	0.185107	0.127066
chr16	85618776	85618876	6416024	0	+	0.5	(0.476,0.515]	chr16	615481	50	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1:ENST00000405402.6:ENST00000411612.5:ENST00000253458.12:ENST00000393243.5	protein_coding	protein_coding	protein_coding	protein_coding	6	66	2	1.86492	2.088025	2.31113	0.0550347	0.00258657	0.165463	0.0469354
chr16	85591627	85591727	6415748	0	+	0.62	(0.57,1]	chr16	615470	349	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	6	34	2	2.00566	2.08796	2.17026	0.0220522	0.00889324	0.123836	0.0798039
chr17	78118770	78118870	6844384	0	-	0.71	(0.57,1]	chr17	677120	4	SS5_PROX	SS5_PROX:INTRON	TMC6	ENSG00000141524.18	ENST00000590602.6:ENST00000592076.5:ENST00000322914.7:ENST00000392467.7:ENST00000306591.11:ENST00000593044.5:ENST00000591436.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	34	2	2.00566	2.08796	2.17026	0.0220522	0.00889324	0.123836	0.0798039
chr7	105059968	105060067	3375082	0	+	0.383838	(0.378,0.408]	chr7	315877	186	INTRON	INTRON	KMT2E	ENSG00000005483.22	ENST00000622386.2:ENST00000257745.9:ENST00000334884.9:ENST00000311117.8:ENST00000478990.5:ENST00000495267.5:ENST00000476671.5:ENST00000667857.1:ENST00000474203.5:ENST00000482560.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	16	173	2	1.58263	2.087875	2.59312	0.0145988	1.09321e-4	0.0982233	0.00884858
chr19	55044317	55044414	7100604	0	+	0.381443	(0.378,0.408]	chr19	712225	1	INTRON	INTRON	GP6-AS1	ENSG00000267265.6	ENST00000593060.5	lncRNA	lncRNA	lncRNA	lncRNA	16	173	2	1.86466	2.087785	2.31091	0.00450586	5.71091e-4	0.0595107	0.0217398
chr1	246628804	246628904	350611	0	+	0.44	(0.408,0.44]	chr1	40508	68	INTRON	INTRON	CNST	ENSG00000162852.14	ENST00000483271.1:ENST00000366513.9:ENST00000366512.7:ENST00000366511.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	45	2	1.87977	2.087735	2.2957	0.0516458	0.0282738	0.176696	0.125825
chr16	10482844	10482943	6287264	0	+	0.464646	(0.44,0.476]	chr16	602048	7	UTR3	UTR3:EXON_MRNA	ATF7IP2	ENSG00000166669.14	ENST00000396559.5:ENST00000396560.6:ENST00000562102.6:ENST00000568027.5:ENST00000324570.9:ENST00000356427.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	87	2	1.96805	2.087595	2.20714	0.0109533	0.00493236	0.0925675	0.061186
chr7	27660601	27660701	3510922	0	-	0.41	(0.408,0.44]	chr7	327353	106	INTRON	INTRON	HIBADH	ENSG00000106049.9	ENST00000265395.7:ENST00000428288.2:ENST00000496814.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	46	2	2.00768	2.0875700000000004	2.16746	0.035843	0.024436	0.152216	0.12011
chr10	22703237	22703337	4580391	0	-	0.47	(0.44,0.476]	chr10	422046	87	INTRON	INTRON	PIP4K2A	ENSG00000150867.14	ENST00000376573.9:ENST00000545335.5	protein_coding	protein_coding	protein_coding	protein_coding	12	119	2	1.81246	2.08754	2.36262	0.00516266	0.00255041	0.0651248	0.0449067
chr10	47541272	47541371	4609358	0	-	0.383838	(0.378,0.408]	chr10	424649	7	INTRON	INTRON	ENSG00000254929:BMS1P2	ENSG00000254929.6:ENSG00000251079.6	ENST00000605970.5:ENST00000431840.2:ENST00000532854.5:ENST00000450360.2	lncRNA	lncRNA	lncRNA:transcribed_unprocessed_pseudogene	lncRNA:processed_transcript:transcribed_unprocessed_pseudogene	6	65	2	1.56313	2.087505	2.61188	0.0474151	0.0047055	0.153019	0.0631419
chr11	9251992	9252091	4908940	0	-	0.515152	(0.476,0.515]	chr11	460115	66	INTRON	INTRON	DENND5A	ENSG00000184014.9	ENST00000328194.8:ENST00000681203.1:ENST00000530780.2:ENST00000679999.1:ENST00000680470.1:ENST00000680554.1:ENST00000681425.1:ENST00000679568.1:ENST00000679446.1:ENST00000680294.1:ENST00000680742.1:ENST00000680885.1:ENST00000530044.5:ENST00000526707.5:ENST00000532696.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	54	2	1.7425	2.08746	2.43242	0.0417334	0.0091895	0.147007	0.0855292
chrX	135892151	135892250	7895486	0	-	0.50505	(0.476,0.515]	chrX	803847	32	INTRON	INTRON	CT45A10	ENSG00000269586.8	ENST00000682849.1	protein_coding	protein_coding	protein_coding	protein_coding	5	54	2	1.7425	2.08746	2.43242	0.0417334	0.0091895	0.147007	0.0855292
chr10	22704236	22704336	4580401	0	-	0.46	(0.44,0.476]	chr10	422046	97	INTRON	INTRON	PIP4K2A	ENSG00000150867.14	ENST00000376573.9:ENST00000545335.5	protein_coding	protein_coding	protein_coding	protein_coding	11	117	2	1.7899	2.08744	2.38498	0.0158205	5.64944e-4	0.101453	0.0217075
chr19	47136105	47136203	7083921	0	+	0.469388	(0.44,0.476]	chr19	708741	1	INTRON	INTRON	SAE1	ENSG00000142230.13	ENST00000594144.5:ENST00000594526.5:ENST00000597808.5:ENST00000413379.7:ENST00000600706.5:ENST00000270225.12:ENST00000598840.5:ENST00000414294.6:ENST00000600753.1:ENST00000660039.1:ENST00000664120.1:ENST00000596995.1:ENST00000392776.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	91	2	1.56865	2.087425	2.6062	0.0259267	0.00148054	0.121619	0.0353633
chr17	46181025	46181125	6784751	0	-	0.33	(0.32,0.35]	chr17	669245	84	INTRON	INTRON	KANSL1	ENSG00000120071.15	ENST00000574590.6:ENST00000572904.6:ENST00000432791.7:ENST00000575318.6:ENST00000638275.1:ENST00000262419.10:ENST00000648792.1:ENST00000639150.1:ENST00000571698.2:ENST00000639375.1:ENST00000638269.1:ENST00000639356.1:ENST00000574655.6:ENST00000639099.1:ENST00000638902.1:ENST00000576739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	47	2	1.72898	2.08739	2.4458	0.0425977	0.0425433	0.161951	0.148082
chr12	66168215	66168314	5352852	0	-	0.292929	(0.28,0.32]	chr12	511479	67	INTRON	INTRON	TMBIM4	ENSG00000155957.19	ENST00000358230.8:ENST00000544599.5:ENST00000398033.8:ENST00000633367.1:ENST00000286424.12:ENST00000545407.5:ENST00000542724.5:ENST00000545504.1:ENST00000534930.1:ENST00000542072.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	10	140	2	2.05338	2.0873350000000004	2.12129	0.00696605	0.00567009	0.0754576	0.0653997
chr7	105057575	105057674	3375058	0	+	0.474747	(0.44,0.476]	chr7	315877	162	INTRON	INTRON	KMT2E	ENSG00000005483.22	ENST00000622386.2:ENST00000257745.9:ENST00000334884.9:ENST00000311117.8:ENST00000478990.5:ENST00000495267.5:ENST00000476671.5:ENST00000667857.1:ENST00000474203.5:ENST00000482560.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	22	224	2	2.0373	2.0873350000000004	2.13737	0.00183629	3.18723e-4	0.0388302	0.0159645
chr12	91384230	91384330	5383054	0	-	0.4	(0.378,0.408]	chr12	513463	139	INTRON	INTRON	ENSG00000289605	ENSG00000289605.1	ENST00000685093.1	lncRNA	lncRNA	lncRNA	lncRNA	8	79	2	1.34117	2.0873049999999997	2.83344	0.0505568	0.00244811	0.17538	0.0445777
chr21	43874044	43874144	7413878	0	+	0.56	(0.515,0.57]	chr21	755688	63	INTRON	INTRON	AGPAT3	ENSG00000160216.21	ENST00000291572.13:ENST00000448287.5	protein_coding	protein_coding	protein_coding	protein_coding	6	53	2	1.68552	2.08727	2.48902	0.0292028	0.00760558	0.141637	0.0749571
chr22	19341406	19341506	7553497	0	-	0.39	(0.378,0.408]	chr22	772184	95	INTRON	INTRON	HIRA	ENSG00000100084.14	ENST00000263208.5:ENST00000340170.8	protein_coding	protein_coding	protein_coding	protein_coding	9	100	2	1.951	2.0871750000000002	2.22335	0.00907019	0.00388279	0.0807886	0.0567196
chr1	229327958	229328058	652463	0	-	0.51	(0.476,0.515]	chr1	77247	4	SS3_PROX	SS3_PROX:INTRON	CCSAP	ENSG00000154429.11	ENST00000366687.5:ENST00000284617.7:ENST00000366686.1:ENST00000483092.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	45	2	1.79693	2.08712	2.37731	0.0649782	0.0111793	0.179417	0.0937192
chr19	2172637	2172737	6996256	0	+	0.48	(0.476,0.515]	chr19	693417	80	INTRON	INTRON	DOT1L	ENSG00000104885.19	ENST00000398665.8:ENST00000686010.1:ENST00000452696.5:ENST00000478937.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	45	2	1.79693	2.08712	2.37731	0.0649782	0.0111793	0.179417	0.0937192
chr2	43935877	43935976	1109987	0	-	0.50505	(0.476,0.515]	chr2	119016	6	INTRON	INTRON	LRPPRC	ENSG00000138095.20	ENST00000260665.12:ENST00000682308.1:ENST00000683459.1:ENST00000683623.1:ENST00000683125.1:ENST00000683994.1:ENST00000684619.1:ENST00000683833.1:ENST00000682546.1:ENST00000682585.1:ENST00000683220.1:ENST00000683796.1:ENST00000682607.1:ENST00000683590.1:ENST00000684306.1:ENST00000683213.1:ENST00000682779.1:ENST00000682885.1:ENST00000684743.1:ENST00000683346.1:ENST00000683072.1:ENST00000682303.1:ENST00000683329.1:ENST00000682933.1:ENST00000684383.1:ENST00000682480.1:ENST00000684290.1:ENST00000684341.1:ENST00000682595.1:ENST00000683645.1:ENST00000683802.1:ENST00000682845.1:ENST00000684397.1:ENST00000681961.1:ENST00000683694.1:ENST00000683989.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	45	2	1.79693	2.08712	2.37731	0.0649782	0.0111793	0.179417	0.0937192
chr21	37389297	37389397	7406447	0	+	0.49	(0.476,0.515]	chr21	754850	138	INTRON	INTRON	DYRK1A	ENSG00000157540.22	ENST00000646523.1:ENST00000647425.1:ENST00000647188.2:ENST00000647504.1:ENST00000644942.1:ENST00000338785.8:ENST00000643624.1:ENST00000643551.1:ENST00000426672.6:ENST00000398960.7	protein_coding	protein_coding	protein_coding	protein_coding	17	175	2	1.85172	2.08712	2.32252	0.00430147	3.61036e-4	0.0577616	0.0169559
chr1	28506267	28506350	57169	0	+	0.662651	(0.57,1]	chr1	7377	2	SS5_PROX	SS5_PROX:INTRON	RCC1:SNHG3	ENSG00000180198.17:ENSG00000242125.3	ENST00000398958.6:ENST00000649185.1:ENST00000413987.1:ENST00000427469.5:ENST00000683442.1:ENST00000447507.1:ENST00000434290.6:ENST00000373833.10	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	17	85	2	1.83275	2.08705	2.34135	0.00191867	0.00122291	0.0405205	0.0320706
chr14	23007820	23007920	5842240	0	-	0.5	(0.476,0.515]	chr14	555459	8	INTRON	INTRON	C14orf93	ENSG00000100802.15	ENST00000299088.11:ENST00000341470.8:ENST00000397379.7:ENST00000397382.8:ENST00000397377.5:ENST00000397376.6:ENST00000553675.5:ENST00000553931.5:ENST00000554536.5:ENST00000555575.5:ENST00000556812.5:ENST00000553958.5:ENST00000555098.5:ENST00000555998.5:ENST00000556419.5:ENST00000554179.5:ENST00000553606.5:ENST00000557513.5:ENST00000553316.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	45	2	2.06491	2.086825	2.10874	0.0304733	0.0285608	0.143385	0.12666
chr10	101788813	101788912	4680663	0	-	0.343434	(0.32,0.35]	chr10	431944	9	INTRON	INTRON	OGA	ENSG00000198408.14	ENST00000439817.5:ENST00000361464.8:ENST00000357797.9:ENST00000482611.5:ENST00000494347.5:ENST00000479811.5:ENST00000461645.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	61	2	1.54135	2.086725	2.6321	0.0353776	0.0268	0.150752	0.123349
chr16	68112790	68112890	6370498	0	+	0.39	(0.378,0.408]	chr16	612188	232	INTRON	INTRON	ENSG00000261864:NFATC3	ENSG00000261864.1:ENSG00000072736.19	ENST00000548144.1:ENST00000563319.5:ENST00000569766.5:ENST00000553077.5:ENST00000566301.5:ENST00000549350.5:ENST00000566893.5:ENST00000575270.5:ENST00000561714.5:ENST00000346183.8:ENST00000568466.6:ENST00000539828.6:ENST00000562171.1:ENST00000349223.9:ENST00000329524.8:ENST00000379165.8:ENST00000562926.5:ENST00000570212.5:ENST00000563796.5:ENST00000567152.5:ENST00000563288.5:ENST00000535127.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA:processed_transcript	6	56	2	1.70953	2.08663	2.46373	0.0382831	0.0190881	0.141795	0.119229
chr11	65436752	65436852	4805910	0	+	0.37	(0.35,0.378]	chr11	446554	141	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	101	1048	2	1.87947	2.08662	2.29377	2.00729e-4	8.40218e-5	0.0123913	0.008187
chr10	22700537	22700637	4580364	0	-	0.55	(0.515,0.57]	chr10	422046	60	INTRON	INTRON	PIP4K2A	ENSG00000150867.14	ENST00000376573.9:ENST00000545335.5	protein_coding	protein_coding	protein_coding	protein_coding	7	59	2	1.73535	2.08659	2.43783	0.0165373	0.00916404	0.110511	0.0812949
chr19	38650957	38651057	7065761	0	+	0.6	(0.57,1]	chr19	705486	23	INTRON	INTRON	ACTN4	ENSG00000130402.13	ENST00000252699.7:ENST00000588618.5:ENST00000440400.2:ENST00000424234.7:ENST00000589528.1:ENST00000390009.7:ENST00000495553.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	39	2	2.01216	2.08658	2.161	0.0163389	0.00462668	0.101571	0.062717
chr19	5715040	5715140	7124665	0	-	0.41	(0.408,0.44]	chr19	717170	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	LONP1	ENSG00000196365.12	ENST00000360614.8:ENST00000587552.5:ENST00000540670.6:ENST00000593119.5:ENST00000585374.5:ENST00000590558.5:ENST00000590729.5:ENST00000587365.1:ENST00000586617.1:ENST00000590728.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	12	112	2	1.71899	2.08647	2.45395	0.00637293	0.00366321	0.0724874	0.0535094
chr12	120466287	120466384	5433989	0	-	0.463918	(0.44,0.476]	chr12	519512	1	INTRON	INTRON	SRSF9	ENSG00000111786.9	ENST00000229390.8:ENST00000603963.1:ENST00000550458.1:ENST00000546942.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	46	2	1.93084	2.086365	2.24189	0.0443175	0.0193405	0.162302	0.108861
chr16	57180958	57181053	6493057	0	-	0.589474	(0.57,1]	chr16	627981	18	INTRON	INTRON	PSME3IP1	ENSG00000172775.17	ENST00000309137.13:ENST00000566077.5:ENST00000567439.5:ENST00000564108.5:ENST00000562324.5:ENST00000567044.5:ENST00000565458.5:ENST00000562406.5:ENST00000566584.5:ENST00000568671.5:ENST00000565760.5:ENST00000566481.5:ENST00000570184.1:ENST00000566681.1:ENST00000565353.1:ENST00000562400.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	25	2	1.37384	2.086365	2.79889	0.0766386	0.0110274	0.196164	0.0927187
chr17	49711254	49711354	6793614	0	-	0.61	(0.57,1]	chr17	670371	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	FAM117A	ENSG00000121104.8	ENST00000240364.7:ENST00000513602.5:ENST00000503573.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	25	2	1.37384	2.086365	2.79889	0.0766386	0.0110274	0.196164	0.0927187
chr2	197907386	197907485	970130	0	+	0.464646	(0.44,0.476]	chr2	104858	967	INTRON	INTRON	PLCL1	ENSG00000115896.16	ENST00000428675.6:ENST00000435320.1:ENST00000487695.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	46	2	1.93084	2.086365	2.24189	0.0443175	0.0193405	0.162302	0.108861
chr22	19516780	19516836	7477222	0	+	0.607143	(0.57,1]	chr22	762475	1	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CDC45	ENSG00000093009.11	ENST00000407835.6:ENST00000437685.6:ENST00000438587.6:ENST00000672837.1:ENST00000263201.7:ENST00000404724.7:ENST00000671972.1:ENST00000493724.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	25	2	1.37384	2.086365	2.79889	0.0766386	0.0110274	0.196164	0.0927187
chr8	128022812	128022912	3862362	0	+	0.4	(0.378,0.408]	chr8	355521	57	INTRON	INTRON	PVT1	ENSG00000249859.13	ENST00000667305.1:ENST00000690350.1:ENST00000653522.1:ENST00000661830.1:ENST00000657289.1:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000657211.1:ENST00000653845.1:ENST00000651587.1:ENST00000692980.1:ENST00000654324.1:ENST00000657693.1:ENST00000666080.1:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000662410.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000657356.1:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000667714.1:ENST00000654105.1:ENST00000664995.1:ENST00000670714.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000668123.1:ENST00000666776.1:ENST00000659912.1:ENST00000670532.1:ENST00000523068.2:ENST00000671088.1:ENST00000663461.1:ENST00000513868.6:ENST00000692433.1:ENST00000523190.7:ENST00000685606.1:ENST00000690788.1:ENST00000685634.1:ENST00000653990.1:ENST00000655783.1:ENST00000656411.1:ENST00000664742.1:ENST00000655099.1:ENST00000662709.1:ENST00000512617.7:ENST00000660122.1:ENST00000666452.1:ENST00000659666.1:ENST00000659892.1:ENST00000521600.5:ENST00000522875.5:ENST00000653497.1:ENST00000668098.1:ENST00000659106.1:ENST00000666147.1:ENST00000658350.1:ENST00000656999.1:ENST00000664610.1:ENST00000671092.1:ENST00000653853.1	lncRNA	lncRNA	lncRNA	lncRNA	6	65	2	1.6165	2.086285	2.55607	0.0374185	0.00704647	0.155878	0.0718189
chr7	151474960	151475059	3674473	0	-	0.323232	(0.32,0.35]	chr7	341183	30	INTRON	INTRON	RHEB	ENSG00000106615.10	ENST00000262187.10:ENST00000472642.5:ENST00000478470.5:ENST00000496004.5:ENST00000470370.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	85	2	2.04237	2.08619	2.13001	0.0375542	0.00378305	0.140222	0.0562562
chr1	113974106	113974205	192266	0	+	0.333333	(0.32,0.35]	chr1	21240	7	UTR3	UTR3:EXON_MRNA	HIPK1	ENSG00000163349.22	ENST00000426820.7:ENST00000626993.2:ENST00000369558.5:ENST00000340480.8:ENST00000361587.3	protein_coding	protein_coding	protein_coding	protein_coding	6	77	2	2.06533	2.08614	2.10695	0.0174225	0.0127483	0.10453	0.0987441
chr12	68836949	68837049	5163282	0	+	0.46	(0.44,0.476]	chr12	488956	2	SS5_PROX	SS5_PROX:INTRON	MDM2	ENSG00000135679.27	ENST00000258149.11:ENST00000393412.7:ENST00000311420.13:ENST00000393417.8:ENST00000258148.11:ENST00000539479.6:ENST00000523991.5:ENST00000543323.5:ENST00000393415.7:ENST00000393416.7:ENST00000481186.6:ENST00000545204.2:ENST00000544561.6:ENST00000665020.1:ENST00000666617.1:ENST00000671567.1:ENST00000393410.5:ENST00000496959.5:ENST00000299252.8:ENST00000360430.6:ENST00000517852.5:ENST00000546048.5:ENST00000540352.5:ENST00000542502.5:ENST00000537182.5:ENST00000536089.5:ENST00000393413.7:ENST00000350057.9:ENST00000348801.7:ENST00000478070.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	54	2	1.98146	2.08612	2.19078	0.0226089	0.0186013	0.117489	0.117264
chr4	150992219	150992319	2271541	0	-	0.56	(0.515,0.57]	chr4	220921	628	INTRON	INTRON	LRBA	ENSG00000198589.14	ENST00000357115.9:ENST00000651943.2:ENST00000510413.5:ENST00000651035.1:ENST00000507224.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	13	117	2	1.59076	2.08607	2.58138	0.0172265	1.47753e-4	0.104099	0.0105566
chr19	17321230	17321329	7029960	0	+	0.494949	(0.476,0.515]	chr19	699994	17	UTR3	UTR3:EXON_MRNA	DDA1	ENSG00000130311.11	ENST00000359866.9	protein_coding	protein_coding	protein_coding	protein_coding	5	55	2	1.97402	2.086055	2.19809	0.0206778	0.020317	0.121522	0.110999
chr2	167908465	167908565	1258887	0	-	0.51	(0.476,0.515]	chr2	133340	73	INTRON	INTRON	B3GALT1-AS1	ENSG00000235335.3	ENST00000430546.2:ENST00000657553.1:ENST00000670221.1:ENST00000436982.2	lncRNA	lncRNA	lncRNA	lncRNA	13	127	2	1.43454	2.08603	2.73752	0.0214195	4.15782e-4	0.123836	0.0188225
chr5	28858434	28858534	2330334	0	+	0.46	(0.44,0.476]	chr5	225135	479	INTRON	INTRON	LINC02109	ENSG00000259786.7	ENST00000658190.1	lncRNA	lncRNA	lncRNA	lncRNA	14	142	2	1.60118	2.0860250000000002	2.57087	0.0107718	5.18452e-4	0.0920575	0.0209322
chr14	101829805	101829904	5819189	0	+	0.393939	(0.378,0.408]	chr14	551860	45	INTRON	INTRON	PPP2R5C	ENSG00000078304.20	ENST00000694906.1:ENST00000422945.6:ENST00000554442.5:ENST00000328724.9:ENST00000553890.1:ENST00000350249.7:ENST00000557621.5:ENST00000556946.1:ENST00000556307.5:ENST00000553730.5:ENST00000557714.1:ENST00000334743.9:ENST00000445439.7:ENST00000557095.5:ENST00000556493.1:ENST00000553842.1:ENST00000556373.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	54	2	1.50417	2.08601	2.66785	0.0384675	0.0224639	0.159169	0.11692
chr17	27296296	27296394	6580553	0	+	0.285714	(0.28,0.32]	chr17	639598	15	INTRON	INTRON	WSB1	ENSG00000109046.15	ENST00000581440.5:ENST00000578312.5:ENST00000583742.1:ENST00000467843.6:ENST00000579733.5:ENST00000583193.5:ENST00000262394.7:ENST00000427287.6:ENST00000581185.5:ENST00000584354.1:ENST00000583786.5:ENST00000581089.1:ENST00000348811.6:ENST00000582208.1:ENST00000584114.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	13	180	2	1.63719	2.085885	2.53458	0.0251301	2.45847e-4	0.12011	0.0138829
chr5	54295412	54295511	2620767	0	-	0.494949	(0.476,0.515]	chr5	248862	92	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2:ENST00000505630.5:ENST00000505383.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	9	95	2	1.62782	2.085885	2.54395	0.0274391	8.361e-4	0.123904	0.0263691
chr1	109372886	109372986	520769	0	-	0.47	(0.44,0.476]	chr1	61195	29	INTRON	INTRON	SORT1	ENSG00000134243.12	ENST00000538502.5:ENST00000256637.8:ENST00000493736.5:ENST00000482236.5:ENST00000633956.1:ENST00000471996.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	41	2	1.87325	2.0858350000000003	2.29842	0.0552483	0.0265709	0.165463	0.134088
chr9	99125576	99125676	4175639	0	+	0.38	(0.378,0.408]	chr9	380654	199	INTRON	INTRON	TGFBR1	ENSG00000106799.13	ENST00000547314.5:ENST00000552573.6:ENST00000374990.6:ENST00000374994.9:ENST00000552516.5:ENST00000549766.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	43	2	1.94559	2.085745	2.2259	0.0662381	0.0211434	0.181924	0.122929
chr20	50578019	50578119	7286595	0	+	0.49	(0.476,0.515]	chr20	741267	2	SS3_PROX	SS3_PROX:INTRON	PTPN1	ENSG00000196396.10	ENST00000541713.5:ENST00000371621.5	protein_coding	protein_coding	protein_coding	protein_coding	6	62	2	1.95469	2.08573	2.21677	0.0207026	0.0115753	0.110999	0.0962115
chr20	3932174	3932274	7308565	0	-	0.41	(0.408,0.44]	chr20	744262	50	UTR3	UTR3:EXON_MRNA	RNF24	ENSG00000101236.17	ENST00000336095.10:ENST00000358395.11:ENST00000432261.6	protein_coding	protein_coding	protein_coding	protein_coding	7	75	2	2.04842	2.08551	2.1226	0.012812	0.00797555	0.0926667	0.0798772
chr8	70588574	70588673	3966999	0	-	0.292929	(0.28,0.32]	chr8	363935	5	INTRON	INTRON	TRAM1	ENSG00000067167.8	ENST00000262213.7:ENST00000521425.5:ENST00000521049.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	67	2	1.59898	2.085465	2.57195	0.0331711	0.030453	0.143385	0.133994
chr3	23813708	23813808	1387807	0	+	0.51	(0.476,0.515]	chr3	145385	18	INTRON	INTRON	UBE2E1	ENSG00000170142.12	ENST00000306627.8:ENST00000346855.7:ENST00000495141.5:ENST00000442670.5:ENST00000424381.5:ENST00000467766.5:ENST00000475680.5:ENST00000452012.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	42	2	1.69138	2.0854350000000004	2.47949	0.0481165	0.0326974	0.153019	0.145164
chr14	23069209	23069297	5842711	0	-	0.488636	(0.476,0.515]	chr14	555606	3	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	ACIN1	ENSG00000100813.15	ENST00000605057.6:ENST00000557515.5:ENST00000262710.5:ENST00000457657.5:ENST00000357481.6:ENST00000338631.10:ENST00000473758.5:ENST00000397341.7:ENST00000555053.5:ENST00000555566.1:ENST00000553721.5:ENST00000557432.2:ENST00000555352.2:ENST00000553501.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	15	152	2	1.96769	2.085415	2.20314	0.00191826	0.00190879	0.0403772	0.0395832
chr13	33818863	33818961	5467357	0	+	0.428571	(0.408,0.44]	chr13	523924	2	INTRON	INTRON	RFC3	ENSG00000133119.13	ENST00000434425.5:ENST00000380071.8	protein_coding	protein_coding	protein_coding	protein_coding	9	87	2	1.57026	2.08537	2.60048	0.0209471	0.00484324	0.112046	0.0640618
chr1	150327056	150327156	221402	0	+	0.43	(0.408,0.44]	chr1	24967	1	SS3_PROX	SS3_PROX:INTRON	PRPF3	ENSG00000117360.13	ENST00000496202.5:ENST00000324862.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	52	2	1.45162	2.085365	2.71911	0.0451203	0.0189489	0.163518	0.108861
chr12	112049611	112049711	5414815	0	-	0.39	(0.378,0.408]	chr12	517163	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	NAA25	ENSG00000111300.10	ENST00000261745.9:ENST00000552527.5:ENST00000549711.5:ENST00000551858.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	47	2	1.76032	2.0853450000000002	2.41037	0.0721577	0.0100185	0.187433	0.0880217
chr16	4751837	4751926	6438309	0	-	0.573034	(0.57,1]	chr16	620040	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	ZNF500	ENSG00000103199.14	ENST00000219478.11:ENST00000588942.1:ENST00000591026.1:ENST00000545009.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	39	2	1.64415	2.08524	2.52633	0.0342575	0.0018535	0.135558	0.039946
chr4	26432479	26432578	1937822	0	+	0.444444	(0.44,0.476]	chr4	194470	16	UTR3	UTR3:EXON_MRNA	RBPJ	ENSG00000168214.22	ENST00000355476.8:ENST00000342320.8	protein_coding	protein_coding	protein_coding	protein_coding	5	54	2	1.92837	2.08513	2.24189	0.0222222	0.0193405	0.124303	0.108861
chr7	75414051	75414149	3338228	0	+	0.622449	(0.57,1]	chr7	310814	14	EXON_LNCRNA	EXON_LNCRNA:SS3_PROX:INTRON	NSUN5P1	ENSG00000223705.10	ENST00000691741.1:ENST00000687920.1:ENST00000393633.6:ENST00000687621.1:ENST00000689022.1:ENST00000691865.1:ENST00000688076.1:ENST00000693166.1:ENST00000457988.5:ENST00000689132.1:ENST00000691132.1:ENST00000692954.1:ENST00000455158.5:ENST00000421140.6:ENST00000693244.1:ENST00000422386.5:ENST00000464979.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	8	44	2	1.50772	2.085105	2.66249	0.0388955	9.0016e-4	0.16071	0.0277303
chr1	204534318	204534418	297601	0	+	0.27	[0,0.28]	chr1	34289	11	INTRON	INTRON	MDM4	ENSG00000198625.14	ENST00000367183.7:ENST00000391947.6:ENST00000454264.6:ENST00000612738.4:ENST00000614459.4:ENST00000616250.4:ENST00000367182.8:ENST00000463049.5:ENST00000470908.5:ENST00000471783.1:ENST00000367180.5:ENST00000507825.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	91	2	1.92964	2.0850850000000003	2.24053	0.0256186	0.0157154	0.120376	0.109464
chr16	75007069	75007169	6389499	0	+	0.53	(0.515,0.57]	chr16	614482	43	INTRON	INTRON	ZNRF1	ENSG00000186187.12	ENST00000335325.9:ENST00000320619.10:ENST00000567962.5:ENST00000566250.5:ENST00000564320.1:ENST00000568511.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	98	2	1.77301	2.08505	2.39709	0.0109049	7.86638e-4	0.0873034	0.0258324
chr21	32319614	32319714	7438038	0	-	0.4	(0.378,0.408]	chr21	758744	2	SS3_PROX	SS3_PROX:INTRON	URB1	ENSG00000142207.7	ENST00000382751.4	protein_coding	protein_coding	protein_coding	protein_coding	4	47	2	2.05897	2.085	2.11103	0.0339294	0.0266911	0.134508	0.134419
chr7	107139051	107139151	3378114	0	+	0.31	(0.28,0.32]	chr7	316264	104	INTRON	INTRON	PRKAR2B	ENSG00000005249.13	ENST00000265717.5:ENST00000393613.6:ENST00000488792.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	51	2	1.71442	2.0849349999999998	2.45545	0.0454351	0.0438092	0.164236	0.14901
chr2	101277044	101277140	1199226	0	-	0.25	[0,0.28]	chr2	128147	16	UTR3	UTR3:EXON_MRNA:INTRON	RNF149	ENSG00000163162.9	ENST00000424632.5:ENST00000295317.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	48	2	1.8986	2.084895	2.27119	0.070351	0.0531512	0.184298	0.179787
chr18	9196784	9196882	6869533	0	+	0.367347	(0.35,0.378]	chr18	680574	7	INTRON	INTRON	ANKRD12	ENSG00000101745.17	ENST00000262126.9:ENST00000540578.6:ENST00000581635.5:ENST00000400020.7:ENST00000581758.1:ENST00000546007.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	16	160	2	1.35143	2.08484	2.81825	0.0213712	3.60364e-4	0.123719	0.0175741
chr5	146477696	146477794	2515815	0	+	0.459184	(0.44,0.476]	chr5	240338	58	INTRON	INTRON	TCERG1	ENSG00000113649.13	ENST00000507175.5:ENST00000296702.9:ENST00000679501.2:ENST00000394421.7:ENST00000549332.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	126	2	1.78267	2.084825	2.38698	0.00473782	0.00229045	0.0634475	0.0427959
chr6	161053464	161053563	3025112	0	+	0.323232	(0.32,0.35]	chr6	282325	31	INTRON	INTRON	MAP3K4	ENSG00000085511.20	ENST00000366919.6:ENST00000392142.9:ENST00000542952.5:ENST00000366920.6:ENST00000348824.11:ENST00000544041.5:ENST00000490904.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	73	2	1.63843	2.08475	2.53107	0.0360919	0.00860484	0.152563	0.0784134
chr2	190934997	190935094	960047	0	+	0.257732	[0,0.28]	chr2	104252	23	UTR3	UTR3:EXON_MRNA:INTRON	GLS	ENSG00000115419.13	ENST00000320717.8:ENST00000338435.8:ENST00000457316.5:ENST00000409428.5:ENST00000412247.1	protein_coding	protein_coding	protein_coding	protein_coding	10	144	2	1.76497	2.0847350000000002	2.4045	0.0112436	0.00723722	0.0942535	0.0729826
chr2	58186709	58186807	1126192	0	-	0.44898	(0.44,0.476]	chr2	120903	29	INTRON	INTRON	FANCL	ENSG00000115392.13	ENST00000696400.1:ENST00000403295.8:ENST00000696492.1:ENST00000427708.7:ENST00000696314.1:ENST00000696315.1:ENST00000696454.1:ENST00000696508.1:ENST00000696548.1:ENST00000696542.1:ENST00000696432.1:ENST00000696319.1:ENST00000403676.6:ENST00000696433.1:ENST00000696434.1:ENST00000696499.1:ENST00000696564.1:ENST00000402135.8:ENST00000696546.1:ENST00000233741.9:ENST00000696316.1:ENST00000696378.1:ENST00000696435.1:ENST00000696493.1:ENST00000696543.1:ENST00000696544.1:ENST00000696545.1:ENST00000696565.1:ENST00000696620.1:ENST00000696621.1:ENST00000696635.1:ENST00000696364.1:ENST00000696634.1:ENST00000696619.1:ENST00000696317.1:ENST00000696622.1:ENST00000696467.1:ENST00000696547.1:ENST00000449070.6:ENST00000696305.1:ENST00000417361.2:ENST00000696338.1:ENST00000696361.1:ENST00000696318.1:ENST00000696371.1:ENST00000696409.1:ENST00000696410.1:ENST00000696455.1:ENST00000696468.1:ENST00000696527.1:ENST00000696567.1:ENST00000696324.1:ENST00000696566.1:ENST00000696623.1:ENST00000446381.6:ENST00000696469.1:ENST00000696624.1:ENST00000696411.1:ENST00000696475.1:ENST00000470506.2:ENST00000696358.1:ENST00000696373.1:ENST00000696394.1:ENST00000696320.1:ENST00000696339.1:ENST00000696395.1:ENST00000696341.1:ENST00000696340.1:ENST00000696374.1:ENST00000696396.1:ENST00000696342.1:ENST00000696325.1:ENST00000696399.1:ENST00000696398.1:ENST00000696306.1:ENST00000696397.1:ENST00000696360.1:ENST00000696344.1:ENST00000696343.1:ENST00000696637.1:ENST00000696362.1:ENST00000696528.1:ENST00000696497.1:ENST00000696326.1:ENST00000696638.1:ENST00000696625.1:ENST00000696510.1:ENST00000696438.1:ENST00000696496.1:ENST00000696509.1:ENST00000696569.1:ENST00000696457.1:ENST00000696458.1:ENST00000696473.1:ENST00000696495.1:ENST00000696415.1:ENST00000696472.1:ENST00000696494.1:ENST00000696363.1:ENST00000696414.1:ENST00000696529.1:ENST00000696471.1:ENST00000696459.1:ENST00000696498.1:ENST00000696532.1:ENST00000696416.1:ENST00000696530.1:ENST00000696460.1:ENST00000696570.1:ENST00000696531.1:ENST00000696307.1:ENST00000696401.1:ENST00000696345.1:ENST00000696377.1:ENST00000696417.1:ENST00000696594.1:ENST00000696595.1:ENST00000696379.1:ENST00000696346.1:ENST00000696380.1:ENST00000696347.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	69	2	1.78423	2.0847100000000003	2.38519	0.0143065	0.012193	0.104058	0.0910127
chr1	246176350	246176450	677396	0	-	0.28	[0,0.28]	chr1	79721	801	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000391836.3:ENST00000453676.5:ENST00000462422.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	58	2	1.62313	2.084685	2.54624	0.0605286	0.0388449	0.191883	0.143072
chr6	31836788	31836842	2843854	0	+	0.388889	(0.378,0.408]	chr6	267914	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SNHG32	ENSG00000204387.14	ENST00000375640.7:ENST00000375641.6:ENST00000375635.6:ENST00000375638.7:ENST00000648677.1:ENST00000375642.6:ENST00000614363.4:ENST00000395789.5:ENST00000375633.5	lncRNA	lncRNA	lncRNA	lncRNA	47	471	2	1.62751	2.084605	2.5417	0.00281258	1.98485e-5	0.0471796	0.00343561
chr19	17234800	17234899	7151121	0	-	0.414141	(0.408,0.44]	chr19	722556	18	INTRON	INTRON	NR2F6	ENSG00000160113.6	ENST00000291442.4	protein_coding	protein_coding	protein_coding	protein_coding	7	75	2	2.04611	2.0845700000000003	2.12303	0.016628	0.00586883	0.102621	0.0690758
chr21	7441025	7441125	7365713	0	+	0.3	(0.28,0.32]	chr21	751728	98	INTRON	INTRON	ENSG00000276077	ENSG00000276077.4	ENST00000617062.4:ENST00000625096.3:ENST00000624791.1:ENST00000624907.3:ENST00000624461.3:ENST00000625115.1	lncRNA	lncRNA	lncRNA	lncRNA	5	69	2	1.98806	2.0844899999999997	2.18092	0.0271832	0.0199553	0.123904	0.120668
chrX	48948280	48948380	7815980	0	-	0.47	(0.44,0.476]	chrX	796867	36	INTRON	INTRON	OTUD5	ENSG00000068308.15	ENST00000376488.8:ENST00000396743.7:ENST00000455452.5:ENST00000156084.8:ENST00000428668.2:ENST00000484499.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	62	2	1.92704	2.0844650000000002	2.24189	0.0193405	0.0128054	0.108861	0.0990564
chr3	177153690	177153790	1872008	0	-	0.53	(0.515,0.57]	chr3	187422	176	INTRON	INTRON	TBL1XR1	ENSG00000177565.18	ENST00000457928.7:ENST00000430069.5:ENST00000673974.1:ENST00000352800.10:ENST00000422442.6:ENST00000428970.5:ENST00000424913.5:ENST00000437738.5:ENST00000431421.5:ENST00000635794.1:ENST00000630796.2:ENST00000450267.5:ENST00000630833.2:ENST00000431674.5:ENST00000422066.5:ENST00000443315.5:ENST00000627825.2:ENST00000427349.5:ENST00000413084.5:ENST00000637137.1:ENST00000491623.2:ENST00000637544.1:ENST00000636187.1:ENST00000636912.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	14	124	2	1.96398	2.0844	2.20482	0.00260705	0.00129351	0.0455276	0.0333764
chr12	102120891	102120991	5204865	0	+	0.38	(0.378,0.408]	chr12	492799	4	SS5_PROX	SS5_PROX:INTRON	PARPBP	ENSG00000185480.12	ENST00000327680.7:ENST00000541394.5:ENST00000543784.5:ENST00000392909.7:ENST00000537257.5:ENST00000392911.6:ENST00000541668.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	10	90	2	1.2437	2.0843949999999998	2.92509	0.049286	0.00167715	0.174117	0.0370386
chr1	185054686	185054786	275650	0	+	0.44	(0.408,0.44]	chr1	32263	80	INTRON	INTRON	RNF2	ENSG00000121481.11	ENST00000367509.8:ENST00000498201.1:ENST00000367510.8:ENST00000453650.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	47	2	1.85305	2.08435	2.31565	0.0543543	0.0154718	0.182243	0.100909
chr10	26664692	26664792	4583008	0	-	0.43	(0.408,0.44]	chr10	422280	3	SS3_PROX	SS3_PROX:INTRON	SELENOOLP	ENSG00000227932.2	ENST00000446557.1:ENST00000636744.1	transcribed_unitary_pseudogene	processed_transcript	transcribed_unitary_pseudogene	processed_transcript:transcribed_unitary_pseudogene	4	47	2	1.85305	2.08435	2.31565	0.0543543	0.0154718	0.182243	0.100909
chr12	53454383	53454466	5142907	0	+	0.421687	(0.408,0.44]	chr12	485379	1	UTR5	UTR5:EXON_MRNA:SS3_PROX:INTRON	PCBP2	ENSG00000197111.16	ENST00000546463.6:ENST00000437231.5:ENST00000447282.5:ENST00000359282.9:ENST00000549863.5:ENST00000359462.9:ENST00000550520.6:ENST00000552296.6:ENST00000550192.5:ENST00000551104.5:ENST00000552980.6	protein_coding	protein_coding	protein_coding	protein_coding	6	66	2	2.08376	2.08431	2.08486	0.0145898	0.0129886	0.0991656	0.0981689
chr3	14946965	14947061	1619455	0	-	0.4375	(0.408,0.44]	chr3	167396	9	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	FGD5-AS1	ENSG00000225733.7	ENST00000430166.5:ENST00000424349.1:ENST00000655923.1:ENST00000665449.1:ENST00000665738.1:ENST00000661022.1:ENST00000417835.1:ENST00000426200.1:ENST00000440079.1:ENST00000687714.1:ENST00000693748.1	lncRNA	lncRNA	lncRNA	lncRNA	6	66	2	2.08376	2.08431	2.08486	0.0145898	0.0129886	0.0991656	0.0981689
chr2	20293676	20293775	1076201	0	-	0.242424	[0,0.28]	chr2	114982	25	INTRON	INTRON	PUM2	ENSG00000055917.16	ENST00000338086.9:ENST00000361078.7:ENST00000440577.5	protein_coding	protein_coding	protein_coding	protein_coding	11	166	2	2.05705	2.08425	2.11145	0.0113428	0.00339737	0.0886611	0.0536884
chr17	49711069	49711161	6793612	0	-	0.554348	(0.515,0.57]	chr17	670370	9	UTR3	UTR3:EXON_MRNA	FAM117A	ENSG00000121104.8	ENST00000240364.7:ENST00000513602.5	protein_coding	protein_coding	protein_coding	protein_coding	9	77	2	1.80447	2.084235	2.364	0.00879341	0.00447856	0.084878	0.0593175
chr11	582481	582581	4719633	0	+	0.55	(0.515,0.57]	chr11	436169	4	SS5_PROX	SS5_PROX:INTRON	PHRF1	ENSG00000070047.13	ENST00000264555.10:ENST00000416188.3:ENST00000534320.5:ENST00000413872.6:ENST00000533464.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	29	2	1.7074	2.08422	2.46104	0.0779432	0.032841	0.196685	0.145164
chr13	52432262	52432362	5599147	0	-	0.56	(0.515,0.57]	chr13	535333	30	INTRON	INTRON	VPS36	ENSG00000136100.14	ENST00000650274.1:ENST00000611132.4:ENST00000378060.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	29	2	1.7074	2.08422	2.46104	0.0779432	0.032841	0.196685	0.145164
chr14	73999755	73999854	5921478	0	-	0.555556	(0.515,0.57]	chr14	562471	26	INTRON	INTRON	ENTPD5	ENSG00000187097.13	ENST00000557325.5:ENST00000334696.11:ENST00000556242.5:ENST00000554664.5:ENST00000556108.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	29	2	1.7074	2.08422	2.46104	0.0779432	0.032841	0.196685	0.145164
chr15	74686291	74686391	6222226	0	-	0.52	(0.515,0.57]	chr15	594093	60	INTRON	INTRON	EDC3	ENSG00000179151.13	ENST00000315127.9:ENST00000647659.1:ENST00000565602.5:ENST00000426797.7:ENST00000568176.5:ENST00000566219.1:ENST00000563009.5:ENST00000569561.5:ENST00000566243.5:ENST00000566828.5:ENST00000570138.5:ENST00000563292.1:ENST00000569007.1:ENST00000567813.1:ENST00000566119.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	29	2	1.7074	2.08422	2.46104	0.0779432	0.032841	0.196685	0.145164
chr16	1370757	1370857	6427527	0	-	0.52	(0.515,0.57]	chr16	617809	4	SS3_PROX	SS3_PROX:INTRON	UNKL	ENSG00000059145.19	ENST00000389221.9:ENST00000248104.11:ENST00000403703.5:ENST00000674376.1:ENST00000397464.5:ENST00000508903.7:ENST00000402641.6:ENST00000513783.1:ENST00000515195.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	29	2	1.7074	2.08422	2.46104	0.0779432	0.032841	0.196685	0.145164
chr19	5624276	5624372	7005307	0	+	0.53125	(0.515,0.57]	chr19	694951	5	INTRON	INTRON	SAFB	ENSG00000160633.13	ENST00000589863.5:ENST00000588852.2:ENST00000591666.5:ENST00000292123.9:ENST00000592224.5:ENST00000586934.5:ENST00000454510.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	29	2	1.7074	2.08422	2.46104	0.0779432	0.032841	0.196685	0.145164
chr4	1304555	1304655	1909657	0	+	0.54	(0.515,0.57]	chr4	191478	47	INTRON	INTRON	MAEA	ENSG00000090316.16	ENST00000505177.6:ENST00000513301.5:ENST00000303400.9:ENST00000264750.10:ENST00000503653.5:ENST00000512308.5:ENST00000502558.5:ENST00000509254.5:ENST00000514708.5:ENST00000508634.1:ENST00000503693.1:ENST00000509531.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	29	2	1.7074	2.08422	2.46104	0.0779432	0.032841	0.196685	0.145164
chr12	91550456	91550556	5384721	0	-	0.3	(0.28,0.32]	chr12	513485	432	INTRON	INTRON	ENSG00000289605	ENSG00000289605.1	ENST00000685093.1	lncRNA	lncRNA	lncRNA	lncRNA	5	70	2	1.76378	2.08418	2.40458	0.0395495	0.0141047	0.161534	0.0959618
chr6	157845081	157845181	3015981	0	+	0.46	(0.44,0.476]	chr6	281353	150	INTRON	INTRON	SNX9	ENSG00000130340.17	ENST00000614703.4:ENST00000614800.4:ENST00000680863.1:ENST00000679814.1:ENST00000680464.1:ENST00000681186.1:ENST00000679732.1:ENST00000681183.1:ENST00000681534.1:ENST00000681651.1:ENST00000680089.1:ENST00000680078.1:ENST00000680974.1:ENST00000680095.1:ENST00000680015.1:ENST00000681138.1:ENST00000392185.8:ENST00000679790.1:ENST00000680495.1:ENST00000679691.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	119	2	1.41577	2.084175	2.75258	0.042743	1.23052e-4	0.148082	0.00949625
chr6	147242861	147242961	2989094	0	+	0.31	(0.28,0.32]	chr6	280013	32	INTRON	INTRON	STXBP5	ENSG00000164506.15	ENST00000321680.11:ENST00000367481.7:ENST00000546097.5:ENST00000367480.7	protein_coding	protein_coding	protein_coding	protein_coding	7	96	2	1.57779	2.0841600000000002	2.5905300000000002	0.0502605	0.0020216	0.156383	0.0416117
chr2	180737284	180737383	934030	0	+	0.666667	(0.57,1]	chr2	102576	122	INTRON	INTRON	SCHLAP1	ENSG00000281131.1	ENST00000629145.1	lncRNA	lncRNA	lncRNA	lncRNA	5	26	2	1.64415	2.0841	2.52405	0.0342575	0.0263139	0.135558	0.133676
chr19	1093160	1093255	7111190	0	-	0.442105	(0.44,0.476]	chr19	714271	9	INTRON	INTRON	POLR2E	ENSG00000099817.12	ENST00000615234.5:ENST00000586746.5:ENST00000612655.4:ENST00000589737.5:ENST00000591767.5:ENST00000215587.11:ENST00000586817.5:ENST00000619917.4:ENST00000585838.2:ENST00000614705.4:ENST00000591709.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	70	2	1.92621	2.08405	2.24189	0.0193405	0.00813281	0.108861	0.0810802
chr9	98835466	98835566	4173933	0	+	0.4	(0.378,0.408]	chr9	380378	1	SS5_PROX	SS5_PROX:INTRON	GALNT12	ENSG00000119514.7	ENST00000375011.4	protein_coding	protein_coding	protein_coding	protein_coding	19	182	2	1.41392	2.0839600000000003	2.754	0.0131788	2.26167e-4	0.0999551	0.0138272
chr11	62872560	62872658	4799494	0	+	0.408163	(0.378,0.408]	chr11	444793	5	INTRON	INTRON	SLC3A2	ENSG00000168003.18	ENST00000680729.1:ENST00000680002.1:ENST00000681467.1:ENST00000377890.6:ENST00000538084.2:ENST00000681569.1:ENST00000680725.1:ENST00000377891.6:ENST00000377889.6:ENST00000681215.1:ENST00000535296.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	68	2	2.02762	2.083955	2.14029	0.0181059	0.0106742	0.107247	0.0917199
chr1	27473397	27473497	406597	0	-	0.38	(0.378,0.408]	chr1	48986	441	INTRON	INTRON	WASF2	ENSG00000158195.11	ENST00000618852.5:ENST00000536657.1	protein_coding	protein_coding	protein_coding	protein_coding	10	102	2	1.52653	2.083815	2.6411	0.0217942	0.00174684	0.123836	0.0375932
chr21	37106338	37106438	7405171	0	+	0.33	(0.32,0.35]	chr21	754591	51	INTRON	INTRON	TTC3	ENSG00000182670.14	ENST00000492275.6:ENST00000418766.6:ENST00000485402.5:ENST00000450533.6:ENST00000438055.5:ENST00000696812.1:ENST00000696811.1:ENST00000463216.6:ENST00000481605.6:ENST00000540756.5:ENST00000494243.5:ENST00000411496.2:ENST00000399017.6:ENST00000354749.6:ENST00000479930.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	88	2	1.50457	2.083795	2.66302	0.0309203	0.00542632	0.143443	0.0645052
chr19	19505869	19505968	7036366	0	+	0.515152	(0.476,0.515]	chr19	701523	5	UTR3	UTR3:EXON_MRNA	GATAD2A	ENSG00000167491.18	ENST00000360315.7:ENST00000683918.1:ENST00000404158.5:ENST00000358713.7:ENST00000418032.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	14	145	2	1.94895	2.08378	2.21861	0.00341751	0.00138145	0.0517761	0.0341261
chr1	167962636	167962736	248749	0	+	0.53	(0.515,0.57]	chr1	29542	104	INTRON	INTRON	DCAF6	ENSG00000143164.16	ENST00000450548.5:ENST00000470919.5:ENST00000432587.6:ENST00000367843.7:ENST00000470721.5:ENST00000367840.4:ENST00000312263.10:ENST00000455334.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	11	89	2	1.18189	2.08376	2.98563	0.0603115	1.77567e-4	0.170547	0.0116289
chr15	28198969	28199069	6122780	0	-	0.51	(0.476,0.515]	chr15	583166	2	SS3_PROX	SS3_PROX:INTRON	HERC2	ENSG00000128731.18	ENST00000261609.13:ENST00000567869.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	22	222	2	2.07945	2.083745	2.08804	0.00144098	4.37984e-4	0.0341939	0.018868
chr12	76064078	76064178	5370012	0	-	0.45	(0.44,0.476]	chr12	512308	26	INTRON	INTRON	NAP1L1	ENSG00000187109.15	ENST00000618691.5:ENST00000552056.5:ENST00000393263.7:ENST00000431879.7:ENST00000552147.5:ENST00000547773.5:ENST00000544816.5:ENST00000542344.5:ENST00000535020.6:ENST00000549596.5:ENST00000552342.5:ENST00000547529.6:ENST00000548044.5:ENST00000550934.5:ENST00000551992.5:ENST00000548273.5:ENST00000551600.5:ENST00000547704.5:ENST00000551524.5:ENST00000549988.5:ENST00000547479.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	55	2	1.69402	2.083705	2.47339	0.0456129	0.0090196	0.164236	0.080367
chr19	28515922	28516022	7166254	0	-	0.29	(0.28,0.32]	chr19	724189	477	INTRON	INTRON	ENSG00000283403:ENSG00000267243	ENSG00000283403.1:ENSG00000267243.6	ENST00000592347.5:ENST00000593065.5	lncRNA	lncRNA	lncRNA	lncRNA	10	125	2	1.71173	2.0836	2.45547	0.0121526	0.00495986	0.0964034	0.0615009
chrX	71574293	71574393	7680385	0	+	0.37	(0.35,0.378]	chrX	786485	6	UTR3	UTR3:EXON_MRNA	OGT	ENSG00000147162.14	ENST00000373719.8:ENST00000488174.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	27	294	2	1.95959	2.0835999999999997	2.20761	7.9501e-4	6.38123e-4	0.0260226	0.0228644
chr1	51730224	51730324	100530	0	+	0.43	(0.408,0.44]	chr1	13275	1	SS5_PROX	SS5_PROX:INTRON	OSBPL9	ENSG00000117859.19	ENST00000371714.5:ENST00000428468.6:ENST00000447887.5:ENST00000495776.5:ENST00000435274.6:ENST00000453295.5:ENST00000489990.5:ENST00000484890.5:ENST00000532975.5:ENST00000534040.5:ENST00000527631.5:ENST00000531828.5:ENST00000361556.9:ENST00000473207.6:ENST00000533884.5:ENST00000481937.5:ENST00000526917.5:ENST00000462759.5:ENST00000486942.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	116	2	1.85567	2.083595	2.31152	0.0090746	0.00139382	0.080809	0.0341355
chr9	130734154	130734254	4214066	0	+	0.25	[0,0.28]	chr9	386427	193	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000393293.4	protein_coding	protein_coding	protein_coding	protein_coding	8	123	2	1.76263	2.083565	2.4045	0.0191804	0.00723722	0.119774	0.0729826
chr19	23766430	23766530	7042463	0	+	0.46	(0.44,0.476]	chr19	702194	29	INTRON	INTRON	RPSAP58	ENSG00000288920.1	ENST00000471224.5:ENST00000692590.1:ENST00000475499.2:ENST00000686829.1:ENST00000689525.1:ENST00000691397.1:ENST00000688405.1:ENST00000692739.1:ENST00000687994.1:ENST00000484897.4:ENST00000685013.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	34	2	1.77101	2.083525	2.39604	0.0693975	0.0404291	0.184298	0.161534
chr2	121734726	121734823	1222479	0	-	0.463918	(0.44,0.476]	chr2	130092	22	INTRON	INTRON	NIFK	ENSG00000155438.12	ENST00000285814.9:ENST00000447132.5:ENST00000451734.1:ENST00000477693.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	34	2	1.77101	2.083525	2.39604	0.0693975	0.0404291	0.184298	0.161534
chr8	90010261	90010360	3791848	0	+	0.454545	(0.44,0.476]	chr8	351697	36	INTRON	INTRON	DECR1	ENSG00000104325.7	ENST00000519328.5:ENST00000517314.5:ENST00000521603.5:ENST00000523447.5:ENST00000517597.5:ENST00000519410.5:ENST00000220764.7:ENST00000522161.5:ENST00000519007.5:ENST00000521668.1:ENST00000518725.5:ENST00000517761.5:ENST00000520227.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	34	2	1.77101	2.083525	2.39604	0.0693975	0.0404291	0.184298	0.161534
chr12	122593701	122593797	5241299	0	+	0.46875	(0.44,0.476]	chr12	497803	4	UTR5	UTR5:EXON_MRNA:SS3_PROX:INTRON	KNTC1	ENSG00000184445.12	ENST00000450485.6:ENST00000333479.12:ENST00000535186.1:ENST00000423927.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	21	216	2	1.91535	2.08352	2.25169	0.00198673	3.9206e-4	0.0404678	0.017838
chr15	82371760	82371860	6075698	0	+	0.51	(0.476,0.515]	chr15	578727	160	INTRON	INTRON	UBE2Q2P2	ENSG00000259429.5	ENST00000618775.4	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	5	46	2	1.53534	2.08351	2.63168	0.0476737	0.0237106	0.170116	0.118716
chr17	46146624	46146724	6784402	0	-	0.51	(0.476,0.515]	chr17	669216	254	INTRON	INTRON	KANSL1	ENSG00000120071.15	ENST00000574590.6:ENST00000572904.6:ENST00000432791.7:ENST00000575318.6:ENST00000638275.1:ENST00000262419.10:ENST00000648792.1:ENST00000639531.1:ENST00000639150.1:ENST00000639853.1:ENST00000571698.2:ENST00000639375.1:ENST00000638269.1:ENST00000576248.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	46	2	1.53534	2.08351	2.63168	0.0476737	0.0237106	0.170116	0.118716
chr13	25341932	25342032	5457601	0	+	0.28	[0,0.28]	chr13	522982	19	UTR3	UTR3:EXON_MRNA:INTRON	NUP58	ENSG00000139496.17	ENST00000481980.2:ENST00000490231.6:ENST00000695571.1:ENST00000477876.2:ENST00000695572.1:ENST00000695573.1:ENST00000381736.8:ENST00000381718.8:ENST00000695575.1:ENST00000695576.1:ENST00000695577.1:ENST00000476553.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	116	2	1.60593	2.08348	2.56103	0.0433625	0.00418024	0.162255	0.0571505
chr16	75011068	75011168	6389539	0	+	0.37	(0.35,0.378]	chr16	614482	83	INTRON	INTRON	ZNRF1	ENSG00000186187.12	ENST00000335325.9:ENST00000320619.10:ENST00000567962.5:ENST00000566250.5:ENST00000564320.1:ENST00000568511.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	59	2	2.02424	2.08344	2.14264	0.0274795	0.0164934	0.123904	0.110301
chr21	39195975	39196069	7464320	0	-	0.351064	(0.35,0.378]	chr21	760358	14	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	BRWD1	ENSG00000185658.14	ENST00000333229.6:ENST00000342449.8:ENST00000446924.5:ENST00000380800.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	59	2	1.97646	2.0834	2.19034	0.023941	0.0193942	0.119831	0.119443
chr22	45330433	45330456	7530351	0	+	0.347826	(0.32,0.35]	chr22	769969	1	SS3_PROX	SS3_PROX:INTRON	FAM118A	ENSG00000100376.12	ENST00000216214.7:ENST00000441876.7:ENST00000476478.1:ENST00000459849.1:ENST00000476754.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	63	2	1.72098	2.08339	2.4458	0.0425977	0.0192903	0.148082	0.119831
chrX	13317892	13317991	7622233	0	+	0.535354	(0.515,0.57]	chrX	780291	8	INTRON	INTRON	GS1-600G8.3	ENSG00000231216.1	ENST00000431486.1	lncRNA	lncRNA	lncRNA	lncRNA	5	47	2	1.67758	2.0833	2.48902	0.0471728	0.00760558	0.168737	0.0749571
chr7	158756708	158756807	3689074	0	-	0.525253	(0.515,0.57]	chr7	342353	35	INTRON	INTRON	ESYT2	ENSG00000117868.18	ENST00000251527.10:ENST00000275418.13:ENST00000652148.1	protein_coding	protein_coding	protein_coding	protein_coding	6	53	2	1.62814	2.083295	2.53845	0.035203	0.00632226	0.150193	0.0687526
chr21	28963395	28963492	7436389	0	-	0.381443	(0.378,0.408]	chr21	758379	15	INTRON	INTRON	LTN1	ENSG00000198862.14	ENST00000614971.4:ENST00000389194.7:ENST00000361371.10:ENST00000389195.7	protein_coding	protein_coding	protein_coding	protein_coding	7	60	2	1.49864	2.083245	2.66785	0.0302065	0.0224639	0.142764	0.11692
chr1	224314736	224314834	644767	0	-	0.295918	(0.28,0.32]	chr1	76193	12	INTRON	INTRON	NVL	ENSG00000143748.18	ENST00000391875.6:ENST00000469968.5:ENST00000482491.5:ENST00000281701.11:ENST00000469075.5:ENST00000340871.8:ENST00000467882.5:ENST00000492281.5:ENST00000488718.5:ENST00000436927.5:ENST00000470989.5:ENST00000470903.5:ENST00000461466.5:ENST00000461546.2:ENST00000468673.5:ENST00000487758.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	42	2	1.83771	2.0832100000000002	2.32871	0.0591725	0.0581621	0.189982	0.167723
chr10	37850300	37850400	4602526	0	-	0.3	(0.28,0.32]	chr10	423985	118	INTRON	INTRON	ZNF248	ENSG00000198105.16	ENST00000615949.6:ENST00000485560.5:ENST00000395867.8:ENST00000357328.8:ENST00000611278.4:ENST00000374648.7:ENST00000395873.7:ENST00000395874.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	42	2	1.83771	2.0832100000000002	2.32871	0.0591725	0.0581621	0.189982	0.167723
chr19	23808218	23808291	7042889	0	+	0.287671	(0.28,0.32]	chr19	702233	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPSAP58	ENSG00000288920.1	ENST00000471224.5:ENST00000692590.1:ENST00000475499.2:ENST00000686829.1:ENST00000689525.1:ENST00000691397.1:ENST00000688405.1:ENST00000687994.1:ENST00000484897.4:ENST00000685490.1:ENST00000462186.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	42	2	1.83771	2.0832100000000002	2.32871	0.0591725	0.0581621	0.189982	0.167723
chr4	75796647	75796746	1975248	0	+	0.313131	(0.28,0.32]	chr4	198010	9	INTRON	INTRON	USO1	ENSG00000138768.15	ENST00000514213.7:ENST00000264904.8	protein_coding	protein_coding	protein_coding	protein_coding	3	42	2	1.83771	2.0832100000000002	2.32871	0.0591725	0.0581621	0.189982	0.167723
chr8	99883891	99883991	4002019	0	-	0.31	(0.28,0.32]	chr8	366176	52	INTRON	INTRON	COX6C	ENSG00000164919.11	ENST00000522934.5:ENST00000520517.5:ENST00000520468.7:ENST00000297564.6:ENST00000517682.6:ENST00000520271.5:ENST00000524245.5:ENST00000522940.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	42	2	1.83771	2.0832100000000002	2.32871	0.0591725	0.0581621	0.189982	0.167723
chr1	27470999	27471099	406573	0	-	0.51	(0.476,0.515]	chr1	48986	417	INTRON	INTRON	WASF2	ENSG00000158195.11	ENST00000618852.5:ENST00000536657.1	protein_coding	protein_coding	protein_coding	protein_coding	4	40	2	1.68092	2.083095	2.48527	0.0474026	0.03496	0.169265	0.13747500000000001
chr10	21629137	21629237	4405371	0	+	0.49	(0.476,0.515]	chr10	406487	40	INTRON	INTRON	MLLT10	ENSG00000078403.17	ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000651298.1:ENST00000377059.7:ENST00000652258.1:ENST00000651382.1:ENST00000438473.6:ENST00000650921.1:ENST00000651405.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	40	2	1.68092	2.083095	2.48527	0.0474026	0.03496	0.169265	0.13747500000000001
chr22	21795047	21795146	7560657	0	-	0.535354	(0.515,0.57]	chr22	773370	59	INTRON	INTRON	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	12	101	2	1.75516	2.08299	2.41082	0.00616687	0.00167359	0.0712627	0.0370386
chr12	116264174	116264274	5425416	0	-	0.33	(0.32,0.35]	chr12	518291	261	INTRON	INTRON	MED13L	ENSG00000123066.9	ENST00000281928.9:ENST00000650226.1:ENST00000548743.2:ENST00000551197.2:ENST00000650375.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	60	2	1.42176	2.082955	2.74415	0.0511006	0.0198267	0.176696	0.109608
chr16	29510791	29510891	6470673	0	-	0.52	(0.515,0.57]	chr16	625147	49	INTRON	INTRON	ENSG00000288632	ENSG00000288632.1	ENST00000675579.1	lncRNA	lncRNA	lncRNA	lncRNA	22	191	2	1.73909	2.08293	2.42677	0.00262235	1.49573e-4	0.0470772	0.011202
chr17	1359105	1359204	6699190	0	-	0.444444	(0.44,0.476]	chr17	655527	44	INTRON	INTRON	YWHAE	ENSG00000108953.17	ENST00000264335.13:ENST00000466227.6:ENST00000571732.5:ENST00000573026.1:ENST00000496706.1:ENST00000573196.5:ENST00000575977.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	66	2	1.66462	2.082835	2.50105	0.0520247	0.00240161	0.159508	0.0452061
chr1	92832012	92832063	162415	0	+	0.686275	(0.57,1]	chr1	17509	1	UTR5	UTR5:EXON_MRNA	RPL5	ENSG00000122406.14	ENST00000645300.1:ENST00000370321.8:ENST00000645119.1	protein_coding	protein_coding	protein_coding	protein_coding	48	227	2	1.32806	2.08279	2.83752	0.0048219100000000004	3.64282e-7	0.0639234	3.34811e-4
chr3	138561924	138562024	1829310	0	-	0.6	(0.57,1]	chr3	183871	242	INTRON	INTRON	CEP70	ENSG00000114107.9	ENST00000264982.8:ENST00000489254.5:ENST00000484888.5:ENST00000474781.5:ENST00000481834.5:ENST00000468900.5:ENST00000462419.5:ENST00000478673.5:ENST00000464035.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	35	2	1.63919	2.08276	2.52633	0.05421	0.0018535	0.164887	0.039946
chr7	76052535	76052634	3339697	0	+	0.414141	(0.408,0.44]	chr7	310990	36	INTRON	INTRON	MDH2	ENSG00000146701.12	ENST00000443006.5:ENST00000315758.10:ENST00000461665.5:ENST00000432020.2:ENST00000490105.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	55	2	1.94273	2.082705	2.22268	0.0456237	0.00770925	0.149888	0.0784002
chr10	68362589	68362689	4638695	0	-	0.47	(0.44,0.476]	chr10	426535	68	INTRON	INTRON	RUFY2	ENSG00000204130.14	ENST00000466493.5:ENST00000484083.5:ENST00000463210.6:ENST00000602465.6:ENST00000388768.6:ENST00000265865.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	40	2	1.62896	2.08268	2.5364	0.0546679	0.0309324	0.182674	0.13151
chr13	45140097	45140197	5478472	0	+	0.47	(0.44,0.476]	chr13	524938	29	INTRON	INTRON	GTF2F2	ENSG00000188342.12	ENST00000340473.8	protein_coding	protein_coding	protein_coding	protein_coding	4	40	2	1.62896	2.08268	2.5364	0.0546679	0.0309324	0.182674	0.13151
chr20	47502319	47502419	7281001	0	+	0.6	(0.57,1]	chr20	740468	3	SS5_PROX	SS5_PROX:INTRON	NCOA3	ENSG00000124151.19	ENST00000371998.8:ENST00000372004.7:ENST00000371997.3	protein_coding	protein_coding	protein_coding	protein_coding	11	59	2	2.05295	2.08268	2.11241	0.00415403	0.00190628	0.0568824	0.0403772
chr5	139311914	139312013	2499565	0	+	0.474747	(0.44,0.476]	chr5	238922	20	EXON_MRNA	EXON_MRNA:INTRON	MATR3	ENSG00000280987.4:ENSG00000015479.20	ENST00000509990.5:ENST00000506147.5:ENST00000512107.5:ENST00000361059.7:ENST00000394800.6:ENST00000502929.5:ENST00000504203.5:ENST00000509644.5:ENST00000512876.5:ENST00000513678.5:ENST00000513121.1:ENST00000504045.5:ENST00000504311.5:ENST00000502499.5:ENST00000510056.5:ENST00000511249.5:ENST00000394805.8:ENST00000507860.1:ENST00000509918.5:ENST00000503811.5:ENST00000511978.5:ENST00000618441.5:ENST00000514528.5:ENST00000504643.5:ENST00000515833.2:ENST00000514402.1:ENST00000505625.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	40	2	1.62896	2.08268	2.5364	0.0546679	0.0309324	0.182674	0.13151
chr4	126587001	126587101	2236579	0	-	0.44	(0.408,0.44]	chr4	219023	1215	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	8	87	2	1.66104	2.08264	2.50424	0.0349715	0.00101099	0.13747500000000001	0.0293364
chr1	153913873	153913973	557676	0	-	0.43	(0.408,0.44]	chr1	65995	145	INTRON	INTRON	GATAD2B	ENSG00000143614.10	ENST00000368655.5:ENST00000634544.1:ENST00000634408.1:ENST00000634401.1:ENST00000634791.1:ENST00000637331.1:ENST00000636008.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	75	2	1.96973	2.082485	2.19524	0.0108773	0.00990486	0.0923273	0.0838372
chr5	133965898	133965998	2725692	0	-	0.55	(0.515,0.57]	chr5	256407	55	INTRON	INTRON	C5orf15	ENSG00000113583.8	ENST00000231512.5:ENST00000507191.1:ENST00000509913.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	83	2	2.04765	2.082445	2.11724	0.0110335	0.00329866	0.0927187	0.0511863
chr13	99522117	99522217	5527082	0	+	0.45	(0.44,0.476]	chr13	528351	16	INTRON	INTRON	TM9SF2	ENSG00000125304.10	ENST00000642475.1:ENST00000376387.5:ENST00000463709.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	54	2	2.08211	2.08244	2.08277	0.0309998	0.0130715	0.13151	0.0996047
chr16	89460481	89460580	6543301	0	-	0.464646	(0.44,0.476]	chr16	634281	288	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	54	2	2.08211	2.08244	2.08277	0.0309998	0.0130715	0.13151	0.0996047
chr4	39829860	39829960	2130681	0	-	0.53	(0.515,0.57]	chr4	210063	40	INTRON	INTRON	PDS5A	ENSG00000121892.15	ENST00000303538.13	protein_coding	protein_coding	protein_coding	protein_coding	7	59	2	1.43219	2.082385	2.73258	0.0483322	0.00260192	0.153415	0.0470772
chr17	82545962	82546062	6692867	0	+	0.36	(0.35,0.378]	chr17	654627	253	INTRON	INTRON	FOXK2	ENSG00000141568.21	ENST00000473637.6:ENST00000335255.10:ENST00000527313.6:ENST00000570585.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	49	2	1.93432	2.082375	2.23043	0.0481438	0.0187487	0.153019	0.117523
chr5	43310822	43310922	2614408	0	-	0.37	(0.35,0.378]	chr5	248528	26	INTRON	INTRON	HMGCS1	ENSG00000112972.15	ENST00000325110.11:ENST00000433297.2:ENST00000507004.1:ENST00000507293.1:ENST00000511774.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	49	2	1.93432	2.082375	2.23043	0.0481438	0.0187487	0.153019	0.117523
chr9	135938860	135938938	4372332	0	-	0.525641	(0.515,0.57]	chr9	402508	1	INTRON	INTRON	UBAC1	ENSG00000130560.9	ENST00000371756.4:ENST00000489050.5:ENST00000465873.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	98	2	1.97184	2.082345	2.19285	0.0041442	0.00258921	0.0589266	0.0452934
chr2	135615052	135615152	874795	0	+	0.25	[0,0.28]	chr2	97911	85	INTRON	INTRON	R3HDM1	ENSG00000048991.17	ENST00000683871.1:ENST00000409478.5:ENST00000264160.8:ENST00000488035.5:ENST00000410054.5:ENST00000628915.2:ENST00000436436.5:ENST00000409606.5:ENST00000456040.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	67	2	1.56918	2.08233	2.59548	0.0481076	0.0346067	0.171525	0.136649
chr19	11931672	11931772	7019819	0	+	0.27	[0,0.28]	chr19	697884	60	INTRON	INTRON	ZNF700	ENSG00000196757.8	ENST00000622593.4:ENST00000254321.10	protein_coding	protein_coding	protein_coding	protein_coding	4	61	2	1.59412	2.0822249999999998	2.57033	0.0729426	0.0305273	0.189278	0.143385
chr22	41434075	41434172	7591164	0	-	0.216495	[0,0.28]	chr22	777383	7	UTR3	UTR3:EXON_MRNA	TOB2	ENSG00000183864.5	ENST00000327492.4	protein_coding	protein_coding	protein_coding	protein_coding	4	61	2	1.59412	2.0822249999999998	2.57033	0.0729426	0.0305273	0.189278	0.143385
chr1	70224379	70224478	142621	0	+	0.383838	(0.378,0.408]	chr1	15978	12	INTRON	INTRON	SRSF11	ENSG00000116754.14	ENST00000370951.5:ENST00000463877.1:ENST00000687381.1:ENST00000370950.7:ENST00000475204.5:ENST00000370949.2:ENST00000395136.7:ENST00000473950.5:ENST00000469170.5:ENST00000486667.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	18	189	2	1.96386	2.082195	2.20053	0.00155018	0.00130328	0.0358577	0.0333932
chr8	108488096	108488196	3847444	0	+	0.3	(0.28,0.32]	chr8	354342	16	UTR3	UTR3:EXON_MRNA	EMC2	ENSG00000104412.8	ENST00000220853.8	protein_coding	protein_coding	protein_coding	protein_coding	4	58	2	2.0243	2.08216	2.14002	0.0364967	0.0304107	0.153759	0.130461
chr2	96632043	96632137	1181134	0	-	0.404255	(0.378,0.408]	chr2	126519	1	INTRON	INTRON	KANSL3	ENSG00000114982.19	ENST00000354204.10:ENST00000431828.6:ENST00000487070.5:ENST00000420155.5:ENST00000670907.1:ENST00000666923.1:ENST00000597150.5:ENST00000444759.5:ENST00000452268.5:ENST00000425656.5:ENST00000448075.1:ENST00000451819.5:ENST00000416138.1:ENST00000418735.1:ENST00000475820.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	79	2	1.76983	2.082135	2.39444	0.0122858	0.0109303	0.0924702	0.091087
chr22	23205447	23205547	7483456	0	+	0.5	(0.476,0.515]	chr22	763541	57	INTRON	INTRON	BCR	ENSG00000186716.21	ENST00000479188.5:ENST00000359540.7:ENST00000305877.13:ENST00000463770.5:ENST00000487679.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	90	2	1.62997	2.08208	2.53419	0.018725	0.00251905	0.117523	0.0446195
chr22	20095295	20095394	7478389	0	+	0.575758	(0.57,1]	chr22	762741	1	INTRON	INTRON	DGCR8	ENSG00000128191.16	ENST00000383024.6:ENST00000351989.8:ENST00000495826.5:ENST00000407755.1:ENST00000498171.5:ENST00000491892.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	27	2	1.79978	2.081945	2.36411	0.0408868	0.0199509	0.161534	0.109608
chr4	770598	770697	2093304	0	-	0.343434	(0.32,0.35]	chr4	206823	26	INTRON	INTRON	ENSG00000249592	ENSG00000249592.7	ENST00000660016.1:ENST00000665579.1:ENST00000503571.5:ENST00000652800.1:ENST00000507446.1	lncRNA	lncRNA	lncRNA	lncRNA	12	113	2	1.26843	2.08194	2.89545	0.0371601	0.0022546	0.155878	0.0425438
chr17	81548705	81548805	6848706	0	-	0.56	(0.515,0.57]	chr17	678071	1	SS5_PROX	SS5_PROX:INTRON	FAAP100	ENSG00000185504.17	ENST00000443656.6:ENST00000327787.13	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	104	2	1.57405	2.08188	2.58971	0.0221119	3.3987e-4	0.123903	0.0170719
chr1	25338017	25338115	403270	0	-	0.591837	(0.57,1]	chr1	48413	11	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	RSRP1	ENSG00000117616.18	ENST00000473314.6:ENST00000561867.1:ENST00000568996.1:ENST00000566599.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	44	2	2.06823	2.0818649999999996	2.0955	0.00680672	0.00622614	0.0718276	0.0711884
chr7	87162797	87162888	3345727	0	+	0.296703	(0.28,0.32]	chr7	311633	1	UTR5	UTR5:EXON_MRNA:SS3_PROX:INTRON	DMTF1	ENSG00000135164.19	ENST00000413276.6:ENST00000447863.5:ENST00000579677.5:ENST00000425406.5:ENST00000446796.6:ENST00000420131.5:ENST00000414630.6:ENST00000547146.6:ENST00000579850.5:ENST00000453049.5:ENST00000331242.12:ENST00000430405.7:ENST00000449088.7:ENST00000448598.5:ENST00000428819.5:ENST00000432937.6:ENST00000584619.5:ENST00000432366.6:ENST00000423590.6:ENST00000394703.9:ENST00000584457.5:ENST00000580710.5:ENST00000579592.5:ENST00000434534.5:ENST00000582925.5:ENST00000412139.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	110	2	1.7305	2.08183	2.43316	0.0327022	0.00186476	0.133816	0.0399675
chr1	86721943	86722039	153317	0	+	0.28125	(0.28,0.32]	chr1	16893	20	INTRON	INTRON	SH3GLB1	ENSG00000097033.14	ENST00000616170.4:ENST00000535010.5:ENST00000370558.8:ENST00000482504.1	protein_coding	protein_coding	protein_coding	protein_coding	3	42	2	1.90263	2.081765	2.2609	0.0671429	0.0503272	0.183051	0.17488
chr12	132091210	132091294	5250255	0	+	0.309524	(0.28,0.32]	chr12	499293	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	EP400P1	ENSG00000185684.16	ENST00000407361.8:ENST00000446190.5:ENST00000690966.1:ENST00000689047.1:ENST00000454179.7:ENST00000689533.1:ENST00000688036.1:ENST00000688136.1:ENST00000488030.5:ENST00000389560.6:ENST00000689403.1:ENST00000443539.6:ENST00000392352.5:ENST00000539205.5:ENST00000332441.7	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	3	42	2	1.90263	2.081765	2.2609	0.0671429	0.0503272	0.183051	0.17488
chr5	137939830	137939928	2729844	0	-	0.295918	(0.28,0.32]	chr5	256881	20	UTR3	UTR3:EXON_MRNA	FAM13B	ENSG00000031003.11	ENST00000689681.1:ENST00000033079.7	protein_coding	protein_coding	protein_coding	protein_coding	3	42	2	1.90263	2.081765	2.2609	0.0671429	0.0503272	0.183051	0.17488
chr4	78786905	78787005	1981490	0	+	0.41	(0.408,0.44]	chr4	198463	98	INTRON	INTRON	BMP2K	ENSG00000138756.19	ENST00000389010.7:ENST00000502613.3:ENST00000502871.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	84	2	1.73532	2.0817	2.42808	0.0194186	0.00331055	0.109149	0.0527031
chr12	108652632	108652727	5405976	0	-	0.557895	(0.515,0.57]	chr12	515973	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CORO1C	ENSG00000110880.11	ENST00000261401.8:ENST00000420959.6:ENST00000541050.5:ENST00000549384.5:ENST00000421578.6:ENST00000550542.5:ENST00000549772.5:ENST00000552030.5:ENST00000547361.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	29	2	2.03361	2.0816600000000003	2.12971	0.0757903	0.0325854	0.194427	0.145164
chr19	10894372	10894472	7015196	0	+	0.54	(0.515,0.57]	chr19	697070	221	INTRON	INTRON	CARM1	ENSG00000142453.12	ENST00000327064.9:ENST00000588947.5:ENST00000590699.5:ENST00000344150.8:ENST00000586221.5:ENST00000590039.5:ENST00000589693.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	29	2	2.03361	2.0816600000000003	2.12971	0.0757903	0.0325854	0.194427	0.145164
chr15	64347560	64347660	6204745	0	-	0.33	(0.32,0.35]	chr15	591774	45	INTRON	INTRON	CSNK1G1:ENSG00000259316	ENSG00000169118.18:ENSG00000259316.12	ENST00000303052.13:ENST00000607537.6:ENST00000634654.1:ENST00000634811.1:ENST00000606793.3:ENST00000634251.1:ENST00000634847.3:ENST00000635529.1:ENST00000634318.1:ENST00000635160.1:ENST00000635704.1:ENST00000634529.1:ENST00000635511.1:ENST00000635605.1:ENST00000635593.1:ENST00000634259.2:ENST00000560278.2:ENST00000635413.1:ENST00000634538.1:ENST00000635320.1:ENST00000558783.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	77	2	1.69107	2.081635	2.4722	0.0517392	0.00307237	0.159306	0.0509893
chr3	42094457	42094556	1404469	0	+	0.545455	(0.515,0.57]	chr3	147510	25	INTRON	INTRON	TRAK1	ENSG00000182606.17	ENST00000487159.5:ENST00000672026.1:ENST00000673621.2:ENST00000484786.5:ENST00000327628.10	protein_coding	protein_coding	protein_coding	protein_coding	4	39	2	1.7074	2.081625	2.45585	0.0779432	0.00797827	0.196685	0.0798772
chr22	19430842	19430939	7554417	0	-	0.608247	(0.57,1]	chr22	772321	7	INTRON	INTRON	HIRA:C22orf39	ENSG00000100084.14:ENSG00000242259.9	ENST00000263208.5:ENST00000340170.8:ENST00000509549.5:ENST00000452818.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	22	2	1.63919	2.08162	2.52405	0.05421	0.0263139	0.164887	0.133676
chr9	130744154	130744254	4214166	0	+	0.59	(0.57,1]	chr9	386427	293	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000393293.4	protein_coding	protein_coding	protein_coding	protein_coding	4	22	2	1.63919	2.08162	2.52405	0.05421	0.0263139	0.164887	0.133676
chr14	102656702	102656802	5823174	0	+	0.45	(0.44,0.476]	chr14	552490	630	INTRON	INTRON	RCOR1	ENSG00000089902.10	ENST00000262241.7	protein_coding	protein_coding	protein_coding	protein_coding	5	54	2	1.66462	2.081425	2.49823	0.0520247	0.00718224	0.159508	0.0756118
chr10	73069580	73069677	4647569	0	-	0.247423	[0,0.28]	chr10	427536	2	INTRON	INTRON	P4HA1	ENSG00000122884.13	ENST00000394890.7:ENST00000307116.6:ENST00000373008.6:ENST00000440381.5:ENST00000263556.3	protein_coding	protein_coding	protein_coding	protein_coding	3	48	2	1.95356	2.081415	2.20927	0.0794763	0.0463152	0.19979	0.166231
chr1	16348660	16348760	382582	0	-	0.38	(0.378,0.408]	chr1	44888	329	INTRON	INTRON	FBXO42	ENSG00000037637.11	ENST00000375592.8	protein_coding	protein_coding	protein_coding	protein_coding	12	116	2	1.76615	2.081395	2.39664	0.0052385	0.00480522	0.0656295	0.0602209
chr16	31180627	31180727	6340557	0	+	0.71	(0.57,1]	chr16	608316	4	SS5_PROX	SS5_PROX:INTRON	FUS	ENSG00000089280.19	ENST00000566605.5:ENST00000254108.12:ENST00000380244.7:ENST00000487045.6:ENST00000487509.6:ENST00000568685.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	16	92	2	1.80787	2.081395	2.35492	0.0086124	7.83292e-5	0.0838082	0.00792329
chr16	21418308	21418408	6460489	0	-	0.52	(0.515,0.57]	chr16	623185	1	SS5_PROX	SS5_PROX:INTRON	NPIPB3	ENSG00000169246.16	ENST00000504841.6:ENST00000419180.6:ENST00000448012.6:ENST00000519305.6:ENST00000521589.5:ENST00000534903.1:ENST00000538439.1:ENST00000545358.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	53	2	1.58964	2.0813099999999998	2.57298	0.0408	0.00506495	0.1451	0.0646039
chr1	22069915	22070013	42377	0	+	0.489796	(0.476,0.515]	chr1	5090	2	INTRON	INTRON	ENSG00000289694:CDC42	ENSG00000289694.1:ENSG00000070831.18	ENST00000695855.1:ENST00000695856.1:ENST00000344548.8:ENST00000400259.5:ENST00000667384.2:ENST00000411827.2:ENST00000695858.1:ENST00000695857.1:ENST00000315554.14:ENST00000695859.1:ENST00000498236.1:ENST00000656825.1:ENST00000651171.1:ENST00000652582.1:ENST00000695860.1:ENST00000695796.1:ENST00000695797.1:ENST00000662562.2:ENST00000695798.1:ENST00000695799.1:ENST00000695800.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	94	2	2.06011	2.0812850000000003	2.10246	0.00869033	0.00381269	0.0788605	0.0562562
chr11	881240	881338	4890168	0	-	0.387755	(0.378,0.408]	chr11	457979	60	INTRON	INTRON	CHID1	ENSG00000177830.18	ENST00000323578.13:ENST00000449825.5:ENST00000454838.6:ENST00000529539.5:ENST00000534207.5:ENST00000429789.6:ENST00000528581.5:ENST00000436108.6:ENST00000528521.1:ENST00000526714.5:ENST00000528534.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	10	115	2	1.82004	2.0812600000000003	2.34248	0.012605	0.00173667	0.0980801	0.0375363
chrX	123962306	123962406	7716757	0	+	0.41	(0.408,0.44]	chrX	789457	2	SS5_PROX	SS5_PROX:INTRON	STAG2	ENSG00000101972.20	ENST00000394477.5:ENST00000218089.13:ENST00000455404.5:ENST00000483575.5:ENST00000687810.1:ENST00000687071.1:ENST00000469481.1:ENST00000458700.5:ENST00000371160.5:ENST00000435103.5:ENST00000687852.1:ENST00000371145.8:ENST00000692982.1:ENST00000371157.7:ENST00000691035.1:ENST00000686802.1:ENST00000691383.1:ENST00000686127.1:ENST00000371144.7:ENST00000458176.5:ENST00000466748.5:ENST00000471107.1:ENST00000428941.5:ENST00000435215.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	77	2	1.42285	2.08113	2.73941	0.0421231	0.002744	0.148082	0.0484022
chrX	48913845	48913940	7815644	0	-	0.463158	(0.44,0.476]	chrX	796797	8	UTR3	UTR3:EXON_MRNA	PIM2	ENSG00000102096.9	ENST00000376509.4	protein_coding	protein_coding	protein_coding	protein_coding	11	111	2	1.84951	2.0810750000000002	2.31264	0.00567535	0.00316873	0.0678837	0.0503085
chr12	116156404	116156504	5424333	0	-	0.34	(0.32,0.35]	chr12	518263	445	INTRON	INTRON	MED13L	ENSG00000123066.9	ENST00000281928.9:ENST00000650226.1:ENST00000548743.2:ENST00000647567.1:ENST00000551197.2	protein_coding	protein_coding	protein_coding	protein_coding	4	48	2	1.93031	2.0810649999999997	2.23182	0.068598	0.0231421	0.184298	0.126939
chr4	82356252	82356346	2177352	0	-	0.340426	(0.32,0.35]	chr4	214124	10	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	HNRNPD	ENSG00000138668.19	ENST00000313899.12:ENST00000353341.8:ENST00000514325.1:ENST00000352301.8:ENST00000514671.5:ENST00000508119.5:ENST00000513584.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	48	2	1.93031	2.0810649999999997	2.23182	0.068598	0.0231421	0.184298	0.126939
chr15	72757823	72757921	6220144	0	-	0.418367	(0.408,0.44]	chr15	593831	15	EXON_MRNA	EXON_MRNA:INTRON	ADPGK	ENSG00000159322.18	ENST00000456471.3:ENST00000311669.12:ENST00000569534.5:ENST00000567941.5:ENST00000562621.1:ENST00000563907.5:ENST00000569517.5:ENST00000567733.1:ENST00000565814.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	63	2	1.55035	2.081025	2.6117	0.0455214	0.00555224	0.164236	0.0648867
chr3	48085873	48085973	1687470	0	-	0.49	(0.476,0.515]	chr3	172280	696	INTRON	INTRON	MAP4	ENSG00000047849.22	ENST00000395734.7:ENST00000426837.6:ENST00000360240.10:ENST00000423088.5:ENST00000439356.2:ENST00000468075.2	protein_coding	protein_coding	protein_coding	protein_coding	6	66	2	2.02889	2.080965	2.13304	0.024866	0.00978617	0.132101	0.0835427
chr5	137949879	137949977	2729952	0	-	0.510204	(0.476,0.515]	chr5	256915	3	INTRON	INTRON	FAM13B	ENSG00000031003.11	ENST00000689681.1:ENST00000033079.7:ENST00000425075.6:ENST00000420893.6	protein_coding	protein_coding	protein_coding	protein_coding	5	56	2	2.06491	2.08094	2.09697	0.0304733	0.0136924	0.143385	0.0949306
chr5	146144166	146144266	2747009	0	-	0.34	(0.32,0.35]	chr5	258819	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	LARS1	ENSG00000133706.19	ENST00000674174.1:ENST00000674170.1:ENST00000674479.1:ENST00000674309.1:ENST00000674218.1:ENST00000674467.1:ENST00000674290.1:ENST00000674447.1:ENST00000674270.1:ENST00000674383.1:ENST00000674191.1:ENST00000674158.1:ENST00000506231.6:ENST00000674471.1:ENST00000394434.7:ENST00000674398.1:ENST00000674277.1:ENST00000274562.13:ENST00000510191.5:ENST00000504323.6:ENST00000674310.1:ENST00000512412.2:ENST00000508667.5:ENST00000507095.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	90	2	1.85455	2.08093	2.30731	0.0176772	0.00835992	0.10525	0.0821555
chr9	135951587	135951687	4372471	0	-	0.54	(0.515,0.57]	chr9	402541	33	INTRON	INTRON	UBAC1	ENSG00000130560.9	ENST00000371756.4:ENST00000478485.1:ENST00000486258.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	18	154	2	1.97317	2.080895	2.18862	0.00113408	0.0010017	0.0307488	0.0291632
chr3	183984231	183984327	1882280	0	-	0.34375	(0.32,0.35]	chr3	188191	6	UTR3	UTR3:EXON_MRNA:INTRON	ABCC5	ENSG00000114770.17	ENST00000334444.11:ENST00000265586.10:ENST00000437205.5:ENST00000382494.6:ENST00000392579.6:ENST00000443376.5:ENST00000427120.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	88	2	1.437	2.080865	2.72473	0.0386366	0.00433316	0.159793	0.0579683
chr20	3979593	3979693	7309048	0	-	0.43	(0.408,0.44]	chr20	744300	48	INTRON	INTRON	RNF24	ENSG00000101236.17	ENST00000336095.10:ENST00000358395.11:ENST00000545616.2	protein_coding	protein_coding	protein_coding	protein_coding	7	70	2	1.8937	2.08081	2.26792	0.0179973	0.00928733	0.106756	0.0855292
chr2	174187182	174187282	1270239	0	-	0.36	(0.35,0.378]	chr2	134282	448	INTRON	INTRON	OLA1	ENSG00000138430.16	ENST00000284719.8:ENST00000344357.9:ENST00000428402.6:ENST00000409546.5:ENST00000429575.1	protein_coding	protein_coding	protein_coding	protein_coding	4	45	2	1.5118	2.0808	2.6498	0.0789277	0.0210137	0.198963	0.122348
chrX	41096398	41096498	7644171	0	+	0.42	(0.408,0.44]	chrX	782230	99	INTRON	INTRON	USP9X	ENSG00000124486.14	ENST00000324545.9:ENST00000378308.7	protein_coding	protein_coding	protein_coding	protein_coding	7	69	2	1.62843	2.08078	2.53313	0.025242	0.00739595	0.133676	0.074277
chr1	26777035	26777132	52011	0	+	0.391753	(0.378,0.408]	chr1	6647	7	INTRON	INTRON	ARID1A	ENSG00000117713.21	ENST00000430799.7:ENST00000324856.13:ENST00000457599.6:ENST00000374152.7:ENST00000636219.1:ENST00000466382.2:ENST00000532781.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	110	2	1.76455	2.08072	2.39689	0.0180091	9.29812e-4	0.106756	0.0278746
chr5	171985727	171985826	2772532	0	-	0.444444	(0.44,0.476]	chr5	260958	81	INTRON	INTRON	FBXW11	ENSG00000072803.18	ENST00000296933.10:ENST00000517395.6:ENST00000265094.9:ENST00000393802.6:ENST00000523843.5:ENST00000519693.5:ENST00000520376.1:ENST00000522507.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	62	2	1.56252	2.0806999999999998	2.59888	0.0465207	0.00487719	0.151387	0.0640618
chr5	141579696	141579787	2739782	0	-	0.582418	(0.57,1]	chr5	258124	1	INTRON	INTRON	DIAPH1	ENSG00000131504.18	ENST00000647433.1:ENST00000389054.8:ENST00000518047.5:ENST00000647330.1:ENST00000523100.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	33	2	2.02689	2.08067	2.13445	0.0241482	0.00839052	0.12011	0.0823837
chr1	30896881	30896981	411398	0	-	0.49	(0.476,0.515]	chr1	49595	156	INTRON	INTRON	SDC3	ENSG00000162512.16	ENST00000339394.7	protein_coding	protein_coding	protein_coding	protein_coding	3	33	2	1.8388	2.0805499999999997	2.3223	0.0564473	0.0519312	0.184423	0.159306
chr2	108728731	108728831	847502	0	+	0.5	(0.476,0.515]	chr2	94789	2	SS3_PROX	SS3_PROX:INTRON	RANBP2	ENSG00000153201.16	ENST00000283195.11:ENST00000425282.4:ENST00000629728.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	33	2	1.8388	2.0805499999999997	2.3223	0.0564473	0.0519312	0.184423	0.159306
chr21	46278511	46278609	7471355	0	-	0.489796	(0.476,0.515]	chr21	761689	4	INTRON	INTRON	MCM3AP	ENSG00000160294.11	ENST00000397708.1:ENST00000291688.6	protein_coding	protein_coding	protein_coding	protein_coding	3	33	2	1.8388	2.0805499999999997	2.3223	0.0564473	0.0519312	0.184423	0.159306
chr8	22251314	22251414	3712593	0	+	0.49	(0.476,0.515]	chr8	344788	9	UTR3	UTR3:EXON_MRNA	POLR3D	ENSG00000168495.13	ENST00000306433.9:ENST00000397802.8	protein_coding	protein_coding	protein_coding	protein_coding	3	33	2	1.8388	2.0805499999999997	2.3223	0.0564473	0.0519312	0.184423	0.159306
chr19	1273752	1273844	6994636	0	+	0.336957	(0.32,0.35]	chr19	693007	2	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CIRBP	ENSG00000099622.14	ENST00000591935.5:ENST00000585913.5:ENST00000586773.5:ENST00000587896.6:ENST00000593093.5:ENST00000590347.5:ENST00000587169.5:ENST00000586636.5:ENST00000591376.5:ENST00000589235.5:ENST00000585914.5:ENST00000592234.5:ENST00000444172.6:ENST00000590188.5:ENST00000588917.2:ENST00000586555.2:ENST00000621399.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	20	241	2	1.37812	2.08039	2.78266	0.0253982	2.97208e-5	0.12011	0.00433722
chr1	31919559	31919658	414246	0	-	0.474747	(0.44,0.476]	chr1	49907	6	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	ENSG00000269967:PTP4A2	ENSG00000269967.1:ENSG00000184007.22	ENST00000602889.1:ENST00000647444.2:ENST00000649841.1:ENST00000468531.1:ENST00000534796.5:ENST00000532289.1:ENST00000526960.1:ENST00000524384.5:ENST00000528840.1:ENST00000494444.2:ENST00000529477.5:ENST00000533408.1:ENST00000475464.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA:processed_transcript	20	167	2	1.41242	2.080375	2.74833	0.0110251	4.07917e-4	0.0927187	0.0185763
chr1	213184777	213184877	312045	0	+	0.32	(0.28,0.32]	chr1	35957	79	INTRON	INTRON	RPS6KC1	ENSG00000136643.12	ENST00000615329.4:ENST00000543354.5:ENST00000614059.4:ENST00000543470.5:ENST00000366960.8:ENST00000366959.4:ENST00000490299.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	65	2	1.38068	2.0803599999999998	2.78004	0.0590236	0.0193244	0.189982	0.108861
chr11	68365902	68366002	4816471	0	+	0.45	(0.44,0.476]	chr11	448776	2	SS5_PROX	SS5_PROX:INTRON	LRP5	ENSG00000162337.12	ENST00000294304.12:ENST00000529993.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	45	2	2.0776	2.080185	2.08277	0.0309998	0.0292951	0.141862	0.13151
chr1	45610167	45610263	93473	0	+	0.364583	(0.35,0.378]	chr1	12613	10	EXON_LNCRNA	EXON_LNCRNA:INTRON	NASP	ENSG00000132780.17	ENST00000437901.6:ENST00000537798.5:ENST00000437362.6:ENST00000350030.8:ENST00000527359.5:ENST00000453748.5:ENST00000525515.5:ENST00000528238.5:ENST00000372052.8:ENST00000351223.7:ENST00000530073.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	72	2	1.6599	2.0801	2.5003	0.0545616	0.00256148	0.165292	0.0466761
chr17	37287735	37287833	6761849	0	-	0.357143	(0.35,0.378]	chr17	664932	24	INTRON	INTRON	ACACA	ENSG00000278540.5	ENST00000616317.5:ENST00000614428.4:ENST00000612895.4:ENST00000617649.4:ENST00000613146.4:ENST00000615229.4:ENST00000621960.1:ENST00000617548.1:ENST00000616352.4:ENST00000614789.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	72	2	1.6599	2.0801	2.5003	0.0545616	0.00256148	0.165292	0.0466761
chr17	32376201	32376300	6598257	0	+	0.333333	(0.32,0.35]	chr17	641948	29	UTR3	UTR3:EXON_MRNA:INTRON	ZNF207	ENSG00000010244.19	ENST00000394670.9:ENST00000577908.5:ENST00000581531.5:ENST00000579810.2:ENST00000584416.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	97	2	1.96868	2.080095	2.19151	0.0114722	0.00749728	0.0888882	0.0773151
chr14	67922642	67922741	5766402	0	+	0.434343	(0.408,0.44]	chr14	547062	134	INTRON	INTRON	RAD51B	ENSG00000182185.19	ENST00000487861.5:ENST00000471583.6:ENST00000479335.5:ENST00000487270.5:ENST00000488612.5:ENST00000553595.5:ENST00000497460.5:ENST00000492236.5:ENST00000554244.5:ENST00000478014.5:ENST00000469165.6:ENST00000460526.5:ENST00000468382.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	71	2	1.60905	2.08004	2.55103	0.02971	0.00587353	0.129022	0.0690758
chr10	35366659	35366759	4424804	0	+	0.39	(0.378,0.408]	chr10	407899	291	INTRON	INTRON	CCNY	ENSG00000108100.18	ENST00000374706.5:ENST00000490012.6:ENST00000493157.6:ENST00000374704.8:ENST00000265375.13:ENST00000339497.7:ENST00000492478.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	86	2	1.85507	2.08003	2.30499	0.0109894	0.00683258	0.0927187	0.0713163
chr3	153163743	153163843	1537056	0	+	0.44	(0.408,0.44]	chr3	160077	6	UTR3	UTR3:EXON_MRNA	RAP2B	ENSG00000181467.5	ENST00000323534.5	protein_coding	protein_coding	protein_coding	protein_coding	6	64	2	1.43792	2.08	2.72208	0.062843	0.00364449	0.196433	0.0535094
chrX	40651417	40651514	7805898	0	-	0.278351	[0,0.28]	chrX	795858	19	UTR3	UTR3:EXON_MRNA:INTRON	MED14	ENSG00000180182.11	ENST00000324817.6:ENST00000416199.5	protein_coding	protein_coding	protein_coding	protein_coding	4	67	2	1.95356	2.07999	2.20642	0.0463152	0.0280845	0.166231	0.125065
chr4	137387	137486	1905774	0	+	0.414141	(0.408,0.44]	chr4	191032	55	INTRON	INTRON	ZNF718	ENSG00000250312.8	ENST00000642529.1:ENST00000510175.6:ENST00000609714.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	91	2	1.45405	2.079955	2.70586	0.0381812	9.14702e-4	0.141795	0.027804
chr20	37067563	37067641	7339282	0	-	0.5	(0.476,0.515]	chr20	747916	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RBL1	ENSG00000080839.12	ENST00000373664.8:ENST00000344359.7:ENST00000525052.1	protein_coding	protein_coding	protein_coding	protein_coding	5	54	2	1.83961	2.07981	2.32001	0.0314489	0.0136217	0.13151	0.101682
chr3	49408087	49408185	1694024	0	-	0.489796	(0.476,0.515]	chr3	173713	9	INTRON	INTRON	RHOA	ENSG00000067560.14	ENST00000678200.1:ENST00000422781.6:ENST00000676712.2:ENST00000678921.2:ENST00000445425.6:ENST00000454011.7:ENST00000418115.6:ENST00000679208.1:ENST00000677684.1:ENST00000431929.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	54	2	1.83961	2.07981	2.32001	0.0314489	0.0136217	0.13151	0.101682
chr7	152417036	152417136	3681104	0	-	0.22	[0,0.28]	chr7	341660	580	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000682301.1:ENST00000452749.2:ENST00000680867.1:ENST00000683800.1:ENST00000684278.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	157	2	1.81251	2.07979	2.34707	0.0287393	0.00126341	0.127066	0.0329641
chr3	50020410	50020510	1423764	0	+	0.26	[0,0.28]	chr3	149994	205	INTRON	INTRON	RBM6	ENSG00000004534.15	ENST00000442092.5:ENST00000443081.5:ENST00000419610.5:ENST00000441115.5:ENST00000422955.5:ENST00000454079.5:ENST00000266022.9:ENST00000425608.5:ENST00000434592.5:ENST00000464013.5:ENST00000483350.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	79	2	1.91898	2.079755	2.24053	0.0266433	0.0256186	0.134413	0.120376
chr2	24815846	24815937	712319	0	+	0.373626	(0.35,0.378]	chr2	82378	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	CENPO	ENSG00000138092.11	ENST00000473706.5:ENST00000491031.5:ENST00000380834.7:ENST00000260662.2:ENST00000498362.1:ENST00000464156.5:ENST00000395845.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	72	2	2.02424	2.07974	2.13524	0.0164934	0.0130865	0.110301	0.0934394
chr3	128483084	128483176	1813572	0	-	0.467391	(0.44,0.476]	chr3	182217	8	INTRON	INTRON	GATA2	ENSG00000179348.13	ENST00000341105.7:ENST00000696466.1:ENST00000430265.6:ENST00000487848.5	protein_coding	protein_coding	protein_coding	protein_coding	14	144	2	1.94639	2.07971	2.21303	0.00271426	0.0018823	0.0481064	0.0391433
chr1	20743121	20743220	389412	0	-	0.323232	(0.32,0.35]	chr1	46510	30	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	HP1BP3	ENSG00000127483.19	ENST00000438032.6:ENST00000312239.10:ENST00000375003.6:ENST00000488722.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	40	479	2	2.04132	2.07964	2.11796	5.89415e-4	3.04882e-4	0.0225024	0.0155972
chr10	812533	812631	4541365	0	-	0.285714	(0.28,0.32]	chr10	419197	32	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	LARP4B	ENSG00000107929.16	ENST00000614908.5:ENST00000688365.1:ENST00000316157.8:ENST00000690516.1:ENST00000689323.1:ENST00000688042.1:ENST00000609318.5:ENST00000690211.1:ENST00000448368.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	30	399	2	2.05459	2.079605	2.10462	0.00135044	4.96616e-4	0.0336321	0.0201536
chr11	119005583	119005682	4874050	0	+	0.383838	(0.378,0.408]	chr11	455385	34	INTRON	INTRON	CENATAC	ENSG00000186166.9	ENST00000334418.6:ENST00000524670.5:ENST00000526463.5:ENST00000532132.5:ENST00000580556.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	65	2	1.5653	2.07955	2.5938	0.043739	0.00614976	0.162255	0.0676501
chr5	163438665	163438756	2531026	0	+	0.362637	(0.35,0.378]	chr5	242122	5	INTRON	INTRON	CCNG1	ENSG00000113328.19	ENST00000512163.5:ENST00000393929.5:ENST00000506186.1:ENST00000340828.7:ENST00000510097.5:ENST00000511490.4:ENST00000510664.5:ENST00000511683.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	71	2	1.87726	2.07954	2.28182	0.0297629	0.00637232	0.12908	0.0724821
chr3	143018272	143018371	1529248	0	+	0.353535	(0.35,0.378]	chr3	159357	9	INTRON	INTRON	U2SURP	ENSG00000163714.18	ENST00000488497.7:ENST00000473835.7:ENST00000461591.5:ENST00000493598.6:ENST00000463563.6:ENST00000470400.5:ENST00000488587.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	71	2	1.91706	2.07951	2.24196	0.026412	0.00744693	0.122506	0.0772645
chr18	31912578	31912674	6961090	0	-	0.5	(0.476,0.515]	chr18	688762	25	INTRON	INTRON	TRAPPC8	ENSG00000153339.15	ENST00000283351.10:ENST00000580104.5:ENST00000582539.5:ENST00000582513.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	61	2	1.27247	2.079385	2.8863	0.0520408	0.0111679	0.176908	0.0877435
chr17	38315397	38315496	6605282	0	+	0.434343	(0.408,0.44]	chr17	642947	84	INTRON	INTRON	MRPL45	ENSG00000278845.5	ENST00000619548.1:ENST00000613675.5	protein_coding	protein_coding	protein_coding	protein_coding	6	62	2	1.7519	2.079255	2.40661	0.0239555	0.011475	0.129259	0.0888882
chr7	102538216	102538316	3588518	0	-	0.43	(0.408,0.44]	chr7	334986	4	UTR3	UTR3:EXON_MRNA	POLR2J3	ENSG00000168255.20	ENST00000489144.5:ENST00000464525.5:ENST00000379340.9:ENST00000486319.5	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	48	467	2	1.65833	2.07918	2.50003	0.00218331	2.0299e-5	0.0417893	0.00349633
chr1	225420592	225420691	645680	0	-	0.373737	(0.35,0.378]	chr1	76379	4	INTRON	INTRON	LBR	ENSG00000143815.15	ENST00000272163.9:ENST00000338179.6:ENST00000651341.1:ENST00000425080.1:ENST00000488632.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	82	2	1.6344	2.079175	2.52395	0.0189573	0.00824736	0.118501	0.0773378
chr8	105319281	105319381	3837246	0	+	0.53	(0.515,0.57]	chr8	354028	3	SS5_PROX	SS5_PROX:INTRON	ZFPM2	ENSG00000169946.14	ENST00000518180.1:ENST00000407775.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	35	2	1.81744	2.079155	2.34087	0.0469761	0.031028	0.151917	0.143457
chr9	124713807	124713907	4348640	0	-	0.39	(0.378,0.408]	chr9	399255	1181	INTRON	INTRON	NR6A1	ENSG00000148200.17	ENST00000487099.7:ENST00000373584.7:ENST00000416460.6:ENST00000344523.8	protein_coding	protein_coding	protein_coding	protein_coding	5	56	2	2.04622	2.0790800000000003	2.11194	0.0292534	0.0149927	0.128055	0.107704
chr22	21608856	21608956	7482116	0	+	0.5	(0.476,0.515]	chr22	763238	155	INTRON	INTRON	UBE2L3	ENSG00000185651.16	ENST00000458578.6:ENST00000545681.2:ENST00000696046.1:ENST00000342192.9:ENST00000496722.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	14	144	2	1.95422	2.079055	2.20389	0.00584847	7.08867e-4	0.0667594	0.0242289
chr2	53962756	53962856	1120496	0	-	0.51	(0.476,0.515]	chr2	120102	131	INTRON	INTRON	PSME4	ENSG00000068878.15	ENST00000404125.6:ENST00000389993.7:ENST00000481518.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	45	2	1.72558	2.0789999999999997	2.43242	0.0767648	0.0091895	0.196164	0.0855292
chr7	77751159	77751258	3343619	0	+	0.50505	(0.476,0.515]	chr7	311446	7	INTRON	INTRON	RSBN1L	ENSG00000187257.16	ENST00000334955.13:ENST00000445288.5	protein_coding	protein_coding	protein_coding	protein_coding	4	45	2	1.72558	2.0789999999999997	2.43242	0.0767648	0.0091895	0.196164	0.0855292
chr17	82270288	82270387	6852803	0	-	0.585859	(0.57,1]	chr17	679167	29	INTRON	INTRON	CSNK1D	ENSG00000141551.15	ENST00000398519.9:ENST00000314028.11:ENST00000581241.5:ENST00000392334.6:ENST00000403276.7:ENST00000582844.5:ENST00000580446.1:ENST00000581660.5:ENST00000578194.5:ENST00000579316.5:ENST00000584472.5:ENST00000585026.1:ENST00000579308.1:ENST00000581655.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	36	2	1.42298	2.078985	2.73499	0.0510995	0.00237434	0.176696	0.0438057
chr7	22671926	22672026	3500098	0	-	0.52	(0.515,0.57]	chr7	326683	65	INTRON	INTRON	STEAP1B	ENSG00000105889.16	ENST00000650428.1	protein_coding	processed_transcript	protein_coding	processed_transcript	5	46	2	1.94493	2.07883	2.21273	0.0204583	0.0196151	0.122204	0.109486
chr1	167945920	167946019	248581	0	+	0.353535	(0.35,0.378]	chr1	29536	83	INTRON	INTRON	DCAF6	ENSG00000143164.16	ENST00000450548.5:ENST00000470919.5:ENST00000432587.6:ENST00000367843.7:ENST00000470721.5:ENST00000367840.4:ENST00000312263.10:ENST00000455334.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	59	2	2.04224	2.0787750000000003	2.11531	0.0363073	0.0119629	0.138959	0.0962115
chr10	28594502	28594600	4414425	0	+	0.387755	(0.378,0.408]	chr10	407165	28	INTRON	INTRON	WAC	ENSG00000095787.24	ENST00000680735.1:ENST00000375664.8:ENST00000428935.6:ENST00000628285.3:ENST00000681112.1:ENST00000679570.1:ENST00000375646.5:ENST00000354911.9:ENST00000347934.8:ENST00000420266.6:ENST00000679398.1:ENST00000424454.5:ENST00000442148.6:ENST00000414108.6:ENST00000679428.1:ENST00000439676.5:ENST00000345541.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	79	2	1.77782	2.078755	2.37969	0.0388177	0.00190547	0.143072	0.0403738
chr15	27131786	27131886	5983761	0	+	0.35	(0.32,0.35]	chr15	569164	1046	INTRON	INTRON	GABRG3	ENSG00000182256.13	ENST00000615808.5:ENST00000555083.5	protein_coding	protein_coding	protein_coding	protein_coding	5	63	2	1.97654	2.07873	2.18092	0.0256608	0.0199113	0.120668	0.120491
chr2	61388201	61388300	1129721	0	-	0.343434	(0.32,0.35]	chr2	121474	45	INTRON	INTRON	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000453133.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	83	2	1.61334	2.07871	2.54408	0.0322135	0.00659077	0.132553	0.0737338
chr20	35724269	35724369	7336366	0	-	0.41	(0.408,0.44]	chr20	747453	3	SS5_PROX	SS5_PROX:INTRON	RBM39	ENSG00000131051.24	ENST00000253363.11:ENST00000639702.1:ENST00000656873.1:ENST00000463004.5:ENST00000361162.10:ENST00000461283.5:ENST00000403542.6:ENST00000338163.10:ENST00000528062.7:ENST00000429968.5:ENST00000444878.5:ENST00000665058.1:ENST00000492779.5:ENST00000448303.5:ENST00000490484.7:ENST00000494274.5:ENST00000374038.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	89	2	1.4947	2.0787050000000002	2.66271	0.0566065	4.42751e-4	0.167352	0.0190383
chr7	100873071	100873171	3365807	0	+	0.54	(0.515,0.57]	chr7	315016	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TRIP6	ENSG00000087077.14	ENST00000200457.9:ENST00000476870.5:ENST00000619988.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	90	2	1.99675	2.07863	2.16051	0.0046825	0.00417042	0.0631419	0.0570595
chr11	31480842	31480941	4938952	0	-	0.30303	(0.28,0.32]	chr11	462597	27	INTRON	INTRON	IMMP1L	ENSG00000148950.11	ENST00000532287.6:ENST00000534812.5:ENST00000526776.5:ENST00000278200.5:ENST00000648582.1:ENST00000533642.1:ENST00000527184.5:ENST00000528161.5:ENST00000532624.5:ENST00000529749.5:ENST00000530023.5:ENST00000531693.1:ENST00000532668.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	51	2	1.76378	2.078625	2.39347	0.0504457	0.0395495	0.161534	0.156383
chr7	87161746	87161845	3345716	0	+	0.282828	(0.28,0.32]	chr7	311631	59	INTRON	INTRON	DMTF1	ENSG00000135164.19	ENST00000413276.6:ENST00000447863.5:ENST00000579677.5:ENST00000425406.5:ENST00000446796.6:ENST00000420131.5:ENST00000414630.6:ENST00000547146.6:ENST00000579850.5:ENST00000453049.5:ENST00000331242.12:ENST00000430405.7:ENST00000449088.7:ENST00000448598.5:ENST00000428819.5:ENST00000432937.6:ENST00000584619.5:ENST00000432366.6:ENST00000423590.6:ENST00000394703.9:ENST00000584457.5:ENST00000580710.5:ENST00000579592.5:ENST00000434534.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	51	2	1.76378	2.078625	2.39347	0.0504457	0.0395495	0.161534	0.156383
chr14	37094686	37094786	5877234	0	-	0.41	(0.408,0.44]	chr14	558013	2193	INTRON	INTRON	SLC25A21	ENSG00000183032.12	ENST00000331299.6:ENST00000555449.5:ENST00000557611.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	46	2	1.43792	2.0785150000000003	2.71911	0.062843	0.0189489	0.196433	0.108861
chr1	246549579	246549673	680817	0	-	0.297872	(0.28,0.32]	chr1	79804	6	INTRON	INTRON	TFB2M	ENSG00000162851.8	ENST00000366514.5	protein_coding	protein_coding	protein_coding	protein_coding	4	57	2	1.91611	2.07836	2.24061	0.0539102	0.0194267	0.164153	0.119831
chrX	136878668	136878751	7897672	0	-	0.554217	(0.515,0.57]	chrX	804175	2	SS5_PROX	SS5_PROX:INTRON	RBMX	ENSG00000147274.14	ENST00000431446.7:ENST00000568578.5:ENST00000419968.6:ENST00000464781.5:ENST00000320676.11:ENST00000562646.5:ENST00000565438.1:ENST00000567262.5:ENST00000563370.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	19	171	2	2.0105	2.07828	2.14606	0.00172406	4.82518e-4	0.038341600000000003	0.0203592
chr22	20080885	20080985	7478235	0	+	0.5	(0.476,0.515]	chr22	762699	2	SS5_PROX	SS5_PROX:INTRON	DGCR8	ENSG00000128191.16	ENST00000383024.6:ENST00000351989.8:ENST00000457069.1	protein_coding	protein_coding	protein_coding	protein_coding	27	258	2	1.27571	2.078265	2.88082	0.0169822	1.99465e-5	0.110899	0.00361357
chr11	5424656	5424756	4897466	0	-	0.6	(0.57,1]	chr11	459187	774	INTRON	INTRON	HBG2:ENSG00000239920:HBE1:OR51B5	ENSG00000196565.15:ENSG00000239920.2:ENSG00000213931.7:ENSG00000167355.8	ENST00000380252.6:ENST00000380259.7:ENST00000292896.3:ENST00000380237.5:ENST00000420726.6:ENST00000420465.6:ENST00000415970.6:ENST00000418729.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:nonsense_mediated_decay:processed_transcript	4	24	2	1.91937	2.07824	2.23711	0.0468438	0.0172108	0.167716	0.104099
chr7	128546326	128546426	3407507	0	+	0.3	(0.28,0.32]	chr7	318333	122	INTRON	INTRON	ENSG00000280828	ENSG00000280828.1	ENST00000479267.2	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	6	79	2	1.93579	2.07824	2.22069	0.0243177	0.0139701	0.12011	0.10247
chrX	12975493	12975589	7622116	0	+	0.697917	(0.57,1]	chrX	780223	5	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	TMSB4X	ENSG00000205542.11	ENST00000380636.1:ENST00000451311.7:ENST00000380635.5	protein_coding	protein_coding	protein_coding	protein_coding	4	24	2	1.91937	2.07824	2.23711	0.0468438	0.0172108	0.167716	0.104099
chr4	76131569	76131664	2164267	0	-	0.2	[0,0.28]	chr4	213459	4	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	NUP54	ENSG00000138750.16	ENST00000695546.1:ENST00000695547.1:ENST00000695552.1:ENST00000507257.6:ENST00000264883.8:ENST00000510569.6:ENST00000515460.6:ENST00000695554.1:ENST00000695553.1:ENST00000695548.1:ENST00000695551.1:ENST00000695556.1:ENST00000695549.1:ENST00000695550.1:ENST00000695555.1:ENST00000514313.2:ENST00000514987.6:ENST00000502850.5:ENST00000508465.6:ENST00000512151.5:ENST00000504173.1:ENST00000695557.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	58	2	1.71402	2.07822	2.44242	0.0491024	0.047753	0.170327	0.155269
chr19	8480676	8480775	7011135	0	+	0.444444	(0.44,0.476]	chr19	696197	61	INTRON	INTRON	HNRNPM	ENSG00000099783.12	ENST00000348943.7:ENST00000600092.5:ENST00000325495.9:ENST00000600806.5:ENST00000620401.4:ENST00000594907.5:ENST00000597270.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	46	2	1.54868	2.0782100000000003	2.60774	0.0457575	0.0255874	0.164677	0.120269
chr2	58169398	58169495	1126016	0	-	0.371134	(0.35,0.378]	chr2	120898	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	FANCL	ENSG00000115392.13	ENST00000696400.1:ENST00000403295.8:ENST00000696492.1:ENST00000427708.7:ENST00000696314.1:ENST00000696315.1:ENST00000696454.1:ENST00000696508.1:ENST00000696548.1:ENST00000696542.1:ENST00000696432.1:ENST00000696319.1:ENST00000403676.6:ENST00000696433.1:ENST00000696434.1:ENST00000696499.1:ENST00000696564.1:ENST00000402135.8:ENST00000696546.1:ENST00000233741.9:ENST00000696316.1:ENST00000696378.1:ENST00000696435.1:ENST00000696493.1:ENST00000696543.1:ENST00000696544.1:ENST00000696545.1:ENST00000696565.1:ENST00000696620.1:ENST00000696621.1:ENST00000696635.1:ENST00000696364.1:ENST00000696634.1:ENST00000696619.1:ENST00000696317.1:ENST00000696622.1:ENST00000696467.1:ENST00000696547.1:ENST00000449070.6:ENST00000696305.1:ENST00000417361.2:ENST00000696338.1:ENST00000696361.1:ENST00000696318.1:ENST00000696371.1:ENST00000696409.1:ENST00000696410.1:ENST00000696455.1:ENST00000696468.1:ENST00000696527.1:ENST00000696567.1:ENST00000696324.1:ENST00000696566.1:ENST00000696623.1:ENST00000446381.6:ENST00000696469.1:ENST00000696624.1:ENST00000696411.1:ENST00000696475.1:ENST00000470506.2:ENST00000696358.1:ENST00000696373.1:ENST00000696394.1:ENST00000696320.1:ENST00000696339.1:ENST00000696395.1:ENST00000696341.1:ENST00000696340.1:ENST00000696374.1:ENST00000696396.1:ENST00000696412.1:ENST00000696375.1:ENST00000696342.1:ENST00000696325.1:ENST00000696399.1:ENST00000696398.1:ENST00000696306.1:ENST00000696397.1:ENST00000696360.1:ENST00000696344.1:ENST00000696343.1:ENST00000696637.1:ENST00000696362.1:ENST00000696528.1:ENST00000696497.1:ENST00000696326.1:ENST00000696638.1:ENST00000696625.1:ENST00000696376.1:ENST00000696510.1:ENST00000696438.1:ENST00000696496.1:ENST00000696509.1:ENST00000696569.1:ENST00000696457.1:ENST00000696458.1:ENST00000696473.1:ENST00000696495.1:ENST00000696415.1:ENST00000696472.1:ENST00000696494.1:ENST00000696363.1:ENST00000696414.1:ENST00000696529.1:ENST00000696471.1:ENST00000696459.1:ENST00000696498.1:ENST00000696532.1:ENST00000696416.1:ENST00000696530.1:ENST00000696460.1:ENST00000696570.1:ENST00000696531.1:ENST00000696307.1:ENST00000696401.1:ENST00000696345.1:ENST00000696377.1:ENST00000696417.1:ENST00000696594.1:ENST00000696595.1:ENST00000696379.1:ENST00000696346.1:ENST00000696380.1:ENST00000696347.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	59	2	1.6122	2.078205	2.54421	0.0616849	0.00630238	0.174021	0.0722266
chr22	19949563	19949662	7477479	0	+	0.363636	(0.35,0.378]	chr22	762560	17	INTRON	INTRON	COMT	ENSG00000093010.15	ENST00000676678.1:ENST00000403184.5:ENST00000361682.11:ENST00000403710.5:ENST00000407537.5:ENST00000467943.5:ENST00000678868.1:ENST00000678769.1:ENST00000428707.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	13	157	2	1.87195	2.078205	2.28446	0.00738821	0.00114103	0.0769106	0.0307966
chr7	111298690	111298790	3621469	0	-	0.49	(0.476,0.515]	chr7	337093	3348	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	82	2	1.94611	2.0781799999999997	2.21025	0.00913757	0.0075261	0.0812335	0.0773151
chr1	29061583	29061683	60445	0	+	0.5	(0.476,0.515]	chr1	7726	7	INTRON	INTRON	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000647918.1:ENST00000646800.1:ENST00000644342.1:ENST00000646189.1:ENST00000482464.6:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000646260.1:ENST00000373798.5:ENST00000644600.1:ENST00000649674.1:ENST00000643173.1:ENST00000343067.9:ENST00000644780.1:ENST00000650265.1:ENST00000648181.1:ENST00000643604.1:ENST00000648891.1:ENST00000373797.2:ENST00000349460.9:ENST00000645184.1:ENST00000645111.1:ENST00000643302.1:ENST00000642643.1:ENST00000636666.1:ENST00000644848.1:ENST00000644470.1:ENST00000646871.1:ENST00000488277.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	64	623	2	2.006	2.078125	2.15025	1.79809e-4	1.09823e-4	0.0121697	0.0088711
chr19	15308042	15308142	7147161	0	-	0.45	(0.44,0.476]	chr19	721965	277	INTRON	INTRON	BRD4	ENSG00000141867.19	ENST00000679869.1:ENST00000360016.9:ENST00000594841.5:ENST00000597315.5:ENST00000601941.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	83	2	2.07016	2.0781	2.08604	0.0151815	0.00407817	0.0994339	0.0580928
chr1	236799432	236799532	342535	0	+	0.29	(0.28,0.32]	chr1	39810	33	INTRON	INTRON	MTR	ENSG00000116984.15	ENST00000680454.1:ENST00000366577.10:ENST00000674797.2:ENST00000652435.1:ENST00000679569.1:ENST00000650888.1:ENST00000463959.1:ENST00000535889.6:ENST00000651455.1:ENST00000681102.1:ENST00000679842.1:ENST00000681177.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	69	2	1.68409	2.0780950000000002	2.4721	0.0548665	0.00906617	0.165463	0.0854289
chr3	33844423	33844523	1394866	0	+	0.31	(0.28,0.32]	chr3	146108	2	SS5_PROX	SS5_PROX:INTRON	PDCD6IP	ENSG00000170248.15	ENST00000457054.6:ENST00000648706.1:ENST00000307296.8:ENST00000465122.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	69	2	1.68409	2.0780950000000002	2.4721	0.0548665	0.00906617	0.165463	0.0854289
chr1	246929333	246929432	681937	0	-	0.414141	(0.408,0.44]	chr1	80043	106	INTRON	INTRON	AHCTF1	ENSG00000153207.16	ENST00000648844.2:ENST00000326225.3:ENST00000366508.5	protein_coding	protein_coding	protein_coding	protein_coding	18	181	2	1.44444	2.078035	2.71163	0.0138181	1.48502e-4	0.10247	0.0111404
chr9	37169727	37169827	4118152	0	+	0.39	(0.378,0.408]	chr9	375384	96	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000322831.6:ENST00000461038.5:ENST00000488607.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	19	152	2	0.978474	2.077962	3.17745	0.0633384	1.31721e-4	0.197726	0.0104376
chr16	28155398	28155497	6467891	0	-	0.373737	(0.35,0.378]	chr16	624550	3	SS5_PROX	SS5_PROX:INTRON	XPO6	ENSG00000169180.12	ENST00000304658.10:ENST00000565698.5:ENST00000564337.5:ENST00000566175.1:ENST00000574435.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	82	2	1.87726	2.07796	2.27866	0.0297629	0.00316333	0.12908	0.0516574
chrX	77900955	77901051	7684957	0	+	0.40625	(0.378,0.408]	chrX	786807	10	INTRON	INTRON	COX7B	ENSG00000131174.7	ENST00000373335.4:ENST00000475465.1:ENST00000650309.2:ENST00000647835.1	protein_coding	protein_coding	protein_coding	protein_coding	6	64	2	1.80483	2.0779300000000003	2.35103	0.0201276	0.014158	0.121243	0.0959618
chr1	151219774	151219873	225084	0	+	0.414141	(0.408,0.44]	chr1	25644	34	INTRON	INTRON	PIP5K1A	ENSG00000143398.20	ENST00000447555.5:ENST00000349792.9:ENST00000368888.9:ENST00000409426.5:ENST00000368890.8:ENST00000441902.6:ENST00000454769.2:ENST00000418435.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	76	2	1.44993	2.077895	2.70586	0.0638951	9.14702e-4	0.177824	0.027804
chr6	85592982	85593078	3150937	0	-	0.447917	(0.44,0.476]	chr6	293851	13	INTRON	INTRON	ENSG00000271793:SNX14	ENSG00000271793.2:ENSG00000135317.14	ENST00000682083.1:ENST00000683074.1:ENST00000681965.1:ENST00000682171.1:ENST00000684150.1:ENST00000683785.1:ENST00000682497.1:ENST00000684647.1:ENST00000683643.1:ENST00000682023.1:ENST00000682022.1:ENST00000683542.1:ENST00000683126.1:ENST00000683857.1:ENST00000683898.1:ENST00000682854.1:ENST00000682491.1:ENST00000682174.1:ENST00000684239.1:ENST00000682939.1:ENST00000684570.1:ENST00000682057.1:ENST00000682878.1:ENST00000683880.1:ENST00000684422.1:ENST00000682504.1:ENST00000683726.1:ENST00000684680.1:ENST00000683196.1:ENST00000683458.1:ENST00000683803.1:ENST00000684281.1:ENST00000682991.1:ENST00000683754.1:ENST00000683481.1:ENST00000682455.1:ENST00000682034.1:ENST00000684451.1:ENST00000683583.1:ENST00000682776.1:ENST00000683873.1:ENST00000683878.1:ENST00000683195.1:ENST00000682995.1:ENST00000682374.1:ENST00000683698.1:ENST00000682454.1:ENST00000682694.1:ENST00000682412.1:ENST00000682682.1:ENST00000346348.7:ENST00000314673.8:ENST00000682633.1:ENST00000683085.1:ENST00000682688.1:ENST00000684319.1:ENST00000683577.1:ENST00000682709.1:ENST00000684299.1:ENST00000682133.1:ENST00000682594.1:ENST00000683473.1:ENST00000682106.1:ENST00000683364.1:ENST00000683436.1:ENST00000684220.1:ENST00000683909.1:ENST00000684118.1:ENST00000681981.1:ENST00000682738.1:ENST00000509338.6:ENST00000684717.1:ENST00000682660.1:ENST00000683073.1:ENST00000515216.6:ENST00000684581.1:ENST00000683479.1:ENST00000682464.1:ENST00000684108.1:ENST00000682514.1:ENST00000684017.1:ENST00000684273.1:ENST00000513865.5:ENST00000505648.5:ENST00000369627.6:ENST00000508658.6:ENST00000683097.1:ENST00000683541.1:ENST00000683759.1:ENST00000369635.7:ENST00000684462.1:ENST00000682168.1:ENST00000513869.2:ENST00000514419.6:ENST00000683999.1:ENST00000503906.1:ENST00000683727.1:ENST00000684183.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	42	2	1.66462	2.07787	2.49112	0.0520247	0.0315968	0.159508	0.144381
chr7	5417068	5417168	3472016	0	-	0.46	(0.44,0.476]	chr7	324678	98	INTRON	INTRON	TNRC18	ENSG00000182095.15	ENST00000399537.8:ENST00000430969.6:ENST00000399434.2	protein_coding	protein_coding	protein_coding	protein_coding	4	42	2	1.66462	2.07787	2.49112	0.0520247	0.0315968	0.159508	0.144381
chr11	31504173	31504272	4939187	0	-	0.323232	(0.32,0.35]	chr11	462601	156	INTRON	INTRON	IMMP1L	ENSG00000148950.11	ENST00000532287.6:ENST00000534812.5:ENST00000526776.5:ENST00000278200.5:ENST00000648582.1:ENST00000533642.1:ENST00000527184.5:ENST00000528161.5:ENST00000532624.5:ENST00000529749.5:ENST00000530023.5:ENST00000531693.1:ENST00000532668.1:ENST00000533921.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	88	2	1.50185	2.07786	2.65387	0.0589483	0.00137401	0.167915	0.0340409
chr22	19119032	19119131	7551981	0	-	0.545455	(0.515,0.57]	chr22	771903	292	INTRON	INTRON	DGCR2	ENSG00000070413.20	ENST00000537045.5:ENST00000545799.5:ENST00000263196.12:ENST00000389262.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	82	2	1.69969	2.07777	2.45585	0.00884617	0.00797827	0.0798772	0.079427
chr9	135939472	135939572	4372339	0	-	0.61	(0.57,1]	chr9	402509	4	SS5_PROX	SS5_PROX:INTRON	UBAC1	ENSG00000130560.9	ENST00000371756.4:ENST00000489050.5:ENST00000465873.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	44	2	1.87172	2.07771	2.2837	0.0152293	0.00256797	0.0996307	0.0466761
chr15	82623597	82623696	6248262	0	-	0.555556	(0.515,0.57]	chr15	596252	398	INTRON	INTRON	CPEB1	ENSG00000214575.10	ENST00000684509.1:ENST00000614918.4:ENST00000611031.4:ENST00000617958.4:ENST00000615198.4:ENST00000620182.4:ENST00000617522.4:ENST00000569257.5:ENST00000567678.1	protein_coding	protein_coding	protein_coding	protein_coding	5	46	2	2.00468	2.077595	2.15051	0.0238113	0.0166344	0.118889	0.110511
chr16	1365357	1365455	6427465	0	-	0.520408	(0.515,0.57]	chr16	617784	23	UTR3	UTR3:EXON_MRNA:INTRON	UNKL	ENSG00000059145.19	ENST00000389221.9:ENST00000248104.11:ENST00000403703.5:ENST00000562537.1:ENST00000674376.1:ENST00000397464.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	46	2	2.00468	2.077595	2.15051	0.0238113	0.0166344	0.118889	0.110511
chr3	87824823	87824923	1455333	0	+	0.3	(0.28,0.32]	chr3	153149	23	INTRON	INTRON	HTR1F	ENSG00000179097.7	ENST00000319595.7	protein_coding	protein_coding	protein_coding	protein_coding	7	98	2	1.72287	2.077585	2.4323	0.0286502	0.00540168	0.139456	0.0644179
chr7	66955522	66955619	3326583	0	+	0.474227	(0.44,0.476]	chr7	309376	1	UTR3	UTR3:EXON_MRNA	TMEM248	ENSG00000106609.16	ENST00000341567.8:ENST00000433271.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	54	2	1.7651	2.077565	2.39003	0.039388	0.0106488	0.143072	0.0915714
chr2	187532967	187533066	1289310	0	-	0.535354	(0.515,0.57]	chr2	135621	31	INTRON	INTRON	TFPI	ENSG00000003436.16	ENST00000233156.9:ENST00000409676.5:ENST00000339091.8:ENST00000421427.5:ENST00000437725.5:ENST00000453013.5:ENST00000417013.5:ENST00000420747.1	protein_coding	protein_coding	protein_coding	protein_coding	4	36	2	1.69407	2.0775550000000003	2.46104	0.0459452	0.032841	0.149888	0.145164
chr20	35629359	35629455	7335405	0	-	0.510417	(0.476,0.515]	chr20	747243	16	INTRON	INTRON	CPNE1	ENSG00000214078.13	ENST00000352393.8:ENST00000397443.7:ENST00000317677.9:ENST00000415920.5:ENST00000483359.5:ENST00000397442.5:ENST00000483495.5:ENST00000401607.6:ENST00000437340.5:ENST00000430570.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	54	2	1.99197	2.077515	2.16306	0.039572	0.00973468	0.143072	0.0877284
chr8	60252243	60252343	3956609	0	-	0.49	(0.476,0.515]	chr8	362980	195	INTRON	INTRON	CA8	ENSG00000178538.10	ENST00000317995.5:ENST00000524872.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	54	2	1.99197	2.077515	2.16306	0.039572	0.00973468	0.143072	0.0877284
chr6	10900810	10900908	2811885	0	+	0.540816	(0.515,0.57]	chr6	264568	16	INTRON	INTRON	SYCP2L	ENSG00000153157.13	ENST00000341041.8:ENST00000283141.11:ENST00000543878.5:ENST00000487561.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	46	2	1.88259	2.0774850000000002	2.27238	0.0251849	0.0161808	0.133519	0.101453
chr10	27128542	27128639	4586022	0	-	0.463918	(0.44,0.476]	chr10	422729	14	INTRON	INTRON	YME1L1	ENSG00000136758.20	ENST00000376016.8:ENST00000613434.4:ENST00000326799.7:ENST00000491542.6:ENST00000463270.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	96	2	1.27417	2.077395	2.88062	0.03417	0.001878	0.146815	0.039073
chr16	21863382	21863482	6461875	0	-	0.47	(0.44,0.476]	chr16	623460	2	SS5_PROX	SS5_PROX:INTRON	NPIPB4	ENSG00000185864.18	ENST00000539318.5:ENST00000536041.5:ENST00000543449.1:ENST00000541674.5:ENST00000544693.5:ENST00000538859.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	11	117	2	1.80702	2.077355	2.34769	0.00924948	0.00155283	0.0855292	0.0358949
chrX	71539271	71539371	7680009	0	+	0.23	[0,0.28]	chrX	786397	8	INTRON	INTRON	OGT	ENSG00000147162.14	ENST00000373719.8:ENST00000488174.5:ENST00000373701.7:ENST00000498566.3:ENST00000444774.3:ENST00000455587.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	23	348	2	2.02149	2.0773349999999997	2.13318	0.00381549	7.74941e-4	0.0542786	0.0256241
chr4	102799153	102799229	2213064	0	-	0.315789	(0.28,0.32]	chr4	216729	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	UBE2D3	ENSG00000109332.20	ENST00000453744.7:ENST00000394804.6:ENST00000618836.4:ENST00000394803.9:ENST00000394801.8:ENST00000343106.9:ENST00000508474.5:ENST00000503742.5:ENST00000321805.11:ENST00000350435.11:ENST00000338145.7:ENST00000349311.12:ENST00000504211.5:ENST00000505009.5:ENST00000357194.10:ENST00000505207.5:ENST00000507845.5:ENST00000502404.5:ENST00000508635.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	42	2	1.96475	2.0772500000000003	2.18975	0.0776042	0.0428385	0.196285	0.162255
chr9	132324226	132324326	4366852	0	-	0.29	(0.28,0.32]	chr9	401462	120	INTRON	INTRON	SETX	ENSG00000107290.14	ENST00000224140.6	protein_coding	protein_coding	protein_coding	protein_coding	3	42	2	1.96475	2.0772500000000003	2.18975	0.0776042	0.0428385	0.196285	0.162255
chr13	28235860	28235960	5461807	0	+	0.4	(0.378,0.408]	chr13	523267	151	INTRON	INTRON	PAN3	ENSG00000152520.14	ENST00000503791.5:ENST00000380958.8:ENST00000399613.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	64	2	1.76	2.07722	2.39444	0.023484	0.0122858	0.128531	0.091087
chr20	5572621	5572720	7311949	0	-	0.424242	(0.408,0.44]	chr20	744561	20	INTRON	INTRON	GPCPD1	ENSG00000125772.14	ENST00000379019.7:ENST00000481038.5:ENST00000418646.5:ENST00000633552.1:ENST00000473797.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	62	2	1.8865	2.07721	2.26792	0.0179973	0.0148842	0.107116	0.106756
chr7	119724345	119724445	3628581	0	-	0.42	(0.408,0.44]	chr7	337319	190	INTRON	INTRON	LINC02476	ENSG00000225546.6	ENST00000660268.1:ENST00000431071.5	lncRNA	lncRNA	lncRNA	lncRNA	6	62	2	1.70409	2.07706	2.45003	0.028108	0.00990006	0.137011	0.0838372
chr1	35873877	35873976	70543	0	+	0.343434	(0.32,0.35]	chr1	9024	36	INTRON	INTRON	AGO1	ENSG00000092847.13	ENST00000373206.5	protein_coding	protein_coding	protein_coding	protein_coding	4	53	2	2.01768	2.07694	2.1362	0.0361337	0.0291083	0.152563	0.128029
chr3	197127359	197127457	1901779	0	-	0.367347	(0.35,0.378]	chr3	190577	5	INTRON	INTRON	DLG1	ENSG00000075711.21	ENST00000667157.1:ENST00000346964.6:ENST00000656428.1:ENST00000663148.1:ENST00000655488.1:ENST00000357674.9:ENST00000671185.1:ENST00000658701.1:ENST00000667104.1:ENST00000661336.1:ENST00000669565.1:ENST00000670455.1:ENST00000656087.1:ENST00000670366.1:ENST00000653583.1:ENST00000653795.1:ENST00000671246.1:ENST00000661453.1:ENST00000665728.1:ENST00000664564.1:ENST00000653331.1:ENST00000660432.1:ENST00000660898.1:ENST00000657381.1:ENST00000659221.1:ENST00000654737.1:ENST00000669332.1:ENST00000659716.1:ENST00000660553.1:ENST00000664991.1:ENST00000419354.5:ENST00000661440.1:ENST00000667971.1:ENST00000670935.1:ENST00000668578.1:ENST00000666007.1:ENST00000661229.1:ENST00000660237.1:ENST00000657098.1:ENST00000661013.1:ENST00000436682.6:ENST00000452595.5:ENST00000662727.1:ENST00000422288.6:ENST00000448528.6:ENST00000443183.5:ENST00000656944.1:ENST00000392382.6:ENST00000450955.5:ENST00000658155.1:ENST00000669714.1:ENST00000654733.1:ENST00000469073.2:ENST00000419227.5:ENST00000392381.7:ENST00000471733.5:ENST00000419553.6:ENST00000447466.1:ENST00000661808.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	102	2	1.1333	2.076785	3.02027	0.0695039	8.40802e-4	0.184298	0.0263691
chr3	177031854	177031952	1870752	0	-	0.306122	(0.28,0.32]	chr3	187282	42	INTRON	INTRON	TBL1XR1	ENSG00000177565.18	ENST00000636864.1:ENST00000457928.7:ENST00000430069.5:ENST00000637659.1:ENST00000673974.1:ENST00000631253.2:ENST00000352800.10:ENST00000422442.6:ENST00000626758.1:ENST00000636348.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	83	2	1.83303	2.076775	2.32052	0.0370023	0.00612675	0.139194	0.0708525
chr9	4856133	4856233	4095511	0	+	0.52	(0.515,0.57]	chr9	373212	62	INTRON	INTRON	RCL1	ENSG00000120158.12	ENST00000381750.9:ENST00000442869.5:ENST00000381730.5:ENST00000381728.5:ENST00000448872.6	protein_coding	protein_coding	protein_coding	protein_coding	8	64	2	1.6151	2.076775	2.53845	0.0189412	0.00632226	0.118428	0.0687526
chr12	50444326	50444425	5136780	0	+	0.282828	(0.28,0.32]	chr12	484418	23	INTRON	INTRON	LARP4	ENSG00000161813.23	ENST00000293618.12:ENST00000429001.7:ENST00000398473.7:ENST00000522085.5:ENST00000518444.5:ENST00000518561.5:ENST00000347328.9:ENST00000520064.2:ENST00000521120.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	57	2	1.81582	2.076765	2.33771	0.068122	0.0142701	0.184298	0.103838
chr2	70699764	70699863	1153629	0	-	0.333333	(0.32,0.35]	chr2	123272	30	INTRON	INTRON	ADD2	ENSG00000075340.23	ENST00000403045.6:ENST00000264436.9:ENST00000407644.6:ENST00000355733.7:ENST00000522886.5:ENST00000456320.7:ENST00000413157.6:ENST00000430656.5:ENST00000415348.5:ENST00000425976.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	64	2	1.88909	2.076695	2.2643	0.0553737	0.00712852	0.165463	0.0756118
chr10	133463516	133463614	4540610	0	+	0.367347	(0.35,0.378]	chr10	419129	30	INTRON	INTRON	SCART1	ENSG00000214279.13	ENST00000482993.6:ENST00000463137.5:ENST00000640237.1:ENST00000488261.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	36	2	1.82887	2.07665	2.32443	0.0584878	0.0544216	0.189395	0.164972
chr2	39099044	39099144	1102118	0	-	0.36	(0.35,0.378]	chr2	118304	7	INTRON	INTRON	SOS1	ENSG00000115904.15	ENST00000692089.1:ENST00000402219.8:ENST00000690876.1:ENST00000395038.6:ENST00000691229.1:ENST00000689668.1:ENST00000690679.1:ENST00000461545.2:ENST00000451331.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	36	2	1.82887	2.07665	2.32443	0.0584878	0.0544216	0.189395	0.164972
chr5	69170094	69170191	2380008	0	+	0.360825	(0.35,0.378]	chr5	229157	14	INTRON	INTRON	CCNB1	ENSG00000134057.15	ENST00000506572.5:ENST00000256442.10:ENST00000508407.5:ENST00000505500.5:ENST00000503507.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	36	2	1.82887	2.07665	2.32443	0.0584878	0.0544216	0.189395	0.164972
chr7	10689220	10689320	3483672	0	-	0.36	(0.35,0.378]	chr7	325772	1273	INTRON	INTRON	MGC4859	ENSG00000283117.1	ENST00000634803.1	lncRNA	lncRNA	lncRNA	lncRNA	3	36	2	1.82887	2.07665	2.32443	0.0584878	0.0544216	0.189395	0.164972
chr19	7996594	7996693	7130720	0	-	0.444444	(0.44,0.476]	chr19	718387	44	INTRON	INTRON	ELAVL1	ENSG00000066044.15	ENST00000407627.7:ENST00000596459.5:ENST00000593807.1	protein_coding	protein_coding	protein_coding	protein_coding	4	44	2	1.85904	2.076645	2.29425	0.0518406	0.029889	0.176696	0.129138
chr22	20517185	20517284	7479443	0	+	0.525253	(0.515,0.57]	chr22	762951	84	INTRON	INTRON	MED15	ENSG00000099917.17	ENST00000445987.5:ENST00000444094.5:ENST00000414658.5:ENST00000486656.5:ENST00000433831.5:ENST00000432052.5:ENST00000292733.11:ENST00000263205.11:ENST00000477824.5:ENST00000406969.5:ENST00000382974.6:ENST00000441501.5:ENST00000438962.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	64	2	1.3492	2.0766	2.804	0.0480671	0.00215855	0.171405	0.0417866
chr18	36887104	36887204	6893417	0	+	0.36	(0.35,0.378]	chr18	683221	8	INTRON	INTRON	KIAA1328	ENSG00000150477.15	ENST00000592611.5:ENST00000280020.10:ENST00000590617.5:ENST00000587139.5:ENST00000591619.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	37	2	1.75561	2.076535	2.39746	0.0739399	0.041314	0.190914	0.161534
chr21	34124845	34124944	7401609	0	+	0.494949	(0.476,0.515]	chr21	753976	28	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	MRPS6	ENSG00000243927.6	ENST00000488492.5:ENST00000477091.5:ENST00000399312.3:ENST00000483977.5:ENST00000482679.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	74	2	1.97402	2.07647	2.17892	0.0206778	0.0046578	0.110999	0.0629753
chr3	43703979	43704078	1410310	0	+	0.343434	(0.32,0.35]	chr3	147937	10	INTRON	INTRON	ABHD5	ENSG00000011198.10	ENST00000643520.1:ENST00000458276.7:ENST00000649763.1:ENST00000643140.1:ENST00000643500.1:ENST00000644371.2:ENST00000013894.3:ENST00000646378.1:ENST00000643477.1:ENST00000646799.1:ENST00000454293.2:ENST00000642351.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	11	140	2	1.3612	2.076435	2.79167	0.0548037	1.31209e-4	0.165463	0.00987152
chr3	9992270	9992368	1362023	0	+	0.44898	(0.44,0.476]	chr3	143392	32	INTRON	INTRON	EMC3-AS1	ENSG00000180385.9	ENST00000692142.1:ENST00000366264.6:ENST00000693066.1:ENST00000326237.3:ENST00000440568.1:ENST00000438698.1:ENST00000424904.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	5	57	2	2.00609	2.0763749999999996	2.14666	0.0360127	0.0116436	0.152355	0.0889659
chr3	196499774	196499874	1899983	0	-	0.32	(0.28,0.32]	chr3	190261	107	INTRON	INTRON	RNF168	ENSG00000163961.4	ENST00000318037.3:ENST00000437070.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	58	2	1.47299	2.07637	2.67975	0.0597769	0.0252505	0.189982	0.12011
chr10	73060569	73060669	4647478	0	-	0.43	(0.408,0.44]	chr10	427530	66	INTRON	INTRON	P4HA1	ENSG00000122884.13	ENST00000394890.7:ENST00000307116.6:ENST00000373008.6:ENST00000440381.5:ENST00000263556.3	protein_coding	protein_coding	protein_coding	protein_coding	15	155	2	1.94624	2.0763499999999997	2.20646	0.00627795	5.09013e-4	0.0686495	0.020241
chr5	168563588	168563688	2770559	0	-	0.25	[0,0.28]	chr5	260730	3	SS5_PROX	SS5_PROX:INTRON	PANK3	ENSG00000120137.7	ENST00000239231.7:ENST00000520504.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	101	2	1.81439	2.07632	2.33825	0.0195228	0.0160379	0.109483	0.109464
chr5	180254571	180254670	2782663	0	-	0.40404	(0.378,0.408]	chr5	262721	5	INTRON	INTRON	MAPK9	ENSG00000050748.18	ENST00000452135.7:ENST00000343111.10:ENST00000455781.5:ENST00000393360.7:ENST00000347470.8:ENST00000397072.7:ENST00000393362.8:ENST00000524170.5:ENST00000425491.6:ENST00000539014.5:ENST00000523135.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	56	2	1.89251	2.0763	2.26009	0.0251428	0.0188651	0.133404	0.108861
chr16	9094698	9094798	6285402	0	+	0.39	(0.378,0.408]	chr16	601924	13	INTRON	INTRON	C16orf72	ENSG00000182831.12	ENST00000327827.12:ENST00000574285.2	protein_coding	protein_coding	protein_coding	protein_coding	8	79	2	1.3638	2.076235	2.78867	0.0513185	0.00226991	0.158207	0.0437013
chr16	23422279	23422378	6463773	0	-	0.323232	(0.32,0.35]	chr16	623765	31	INTRON	INTRON	COG7	ENSG00000168434.13	ENST00000307149.10	protein_coding	protein_coding	protein_coding	protein_coding	19	228	2	1.9907300000000001	2.076155	2.16158	0.00384238	5.38634e-4	0.0542786	0.0210056
chr19	6420777	6420874	7128697	0	-	0.412371	(0.408,0.44]	chr19	717750	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	KHSRP	ENSG00000088247.19	ENST00000600480.2:ENST00000398148.7:ENST00000599395.5:ENST00000595112.5:ENST00000595548.5:ENST00000595258.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	52	2	1.49789	2.0760449999999997	2.6542	0.0390091	0.0227514	0.161009	0.117618
chr2	173941398	173941497	1268831	0	-	0.484848	(0.476,0.515]	chr2	134213	66	INTRON	INTRON	SP3	ENSG00000172845.18	ENST00000650743.1:ENST00000310015.12:ENST00000416195.1:ENST00000418194.7:ENST00000652005.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	41	2	1.58335	2.076015	2.56868	0.0640461	0.0256676	0.177882	0.133676
chr2	240013811	240013909	1345614	0	-	0.397959	(0.378,0.408]	chr2	141095	14	UTR3	UTR3:EXON_MRNA:INTRON	NDUFA10	ENSG00000130414.13	ENST00000679183.1:ENST00000677057.1:ENST00000676782.1:ENST00000677407.1:ENST00000676929.1:ENST00000678455.1:ENST00000252711.7:ENST00000677692.1:ENST00000476216.6:ENST00000677395.1:ENST00000678188.1:ENST00000677979.1:ENST00000678914.1:ENST00000678562.1:ENST00000678832.1:ENST00000677155.1:ENST00000677764.1:ENST00000677294.1:ENST00000678468.1:ENST00000678158.1:ENST00000676491.1:ENST00000677114.1:ENST00000404554.5:ENST00000620965.5:ENST00000485344.6:ENST00000679308.1:ENST00000677567.1:ENST00000679158.1:ENST00000443626.5:ENST00000444548.6:ENST00000448880.6:ENST00000677490.1:ENST00000307300.8:ENST00000678898.1:ENST00000677368.1:ENST00000677263.1:ENST00000678289.1:ENST00000676784.1:ENST00000414580.2:ENST00000679332.1:ENST00000678737.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	102	2	1.70953	2.075955	2.44238	0.0190881	0.0019351	0.119229	0.0399069
chr10	74406977	74407077	4458333	0	+	0.47	(0.44,0.476]	chr10	411580	80	INTRON	INTRON	ADK	ENSG00000156110.15	ENST00000672429.1:ENST00000539909.6:ENST00000286621.7:ENST00000673352.1:ENST00000673310.1:ENST00000672920.1:ENST00000672394.1:ENST00000372734.5:ENST00000673027.1:ENST00000541550.6:ENST00000672604.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	85	2	1.93083	2.07593	2.22103	0.00932249	0.00776319	0.0817766	0.0787356
chr6	159787342	159787442	3254680	0	-	0.39	(0.378,0.408]	chr6	302542	2	SS5_PROX	SS5_PROX:INTRON	TCP1	ENSG00000120438.12	ENST00000321394.12:ENST00000544255.5:ENST00000420894.6:ENST00000392168.6:ENST00000539756.1:ENST00000543532.5:ENST00000538530.5:ENST00000538128.5:ENST00000543517.5:ENST00000539948.5:ENST00000545764.1:ENST00000537390.5:ENST00000536394.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	19	204	2	2.05139	2.07593	2.10047	0.00149492	9.90175e-4	0.0350924	0.0289582
chr11	64765290	64765388	4965156	0	-	0.316327	(0.28,0.32]	chr11	467482	8	UTR3	UTR3:EXON_MRNA	SF1	ENSG00000168066.21	ENST00000334944.9:ENST00000227503.13:ENST00000377394.7:ENST00000448404.5:ENST00000377390.8:ENST00000377387.5:ENST00000681407.1:ENST00000443908.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	27	344	2	1.91056	2.0759	2.24124	0.00117551	0.00102873	0.031662	0.029231300000000002
chr7	123727020	123727120	3632441	0	-	0.35	(0.32,0.35]	chr7	337581	174	INTRON	INTRON	WASL	ENSG00000106299.8	ENST00000223023.5	protein_coding	protein_coding	protein_coding	protein_coding	6	77	2	1.64769	2.0759	2.50411	0.0578603	0.00267989	0.167723	0.0478767
chr9	120782611	120782710	4335356	0	-	0.454545	(0.44,0.476]	chr9	398253	37	INTRON	INTRON	FBXW2	ENSG00000119402.18	ENST00000684405.1:ENST00000684001.1:ENST00000684047.1:ENST00000608872.6:ENST00000453291.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	74	2	2.03034	2.07585	2.12136	0.0173569	0.00591413	0.104189	0.0694038
chr10	103174357	103174457	4683289	0	-	0.5	(0.476,0.515]	chr10	432403	1	SS5_PROX	SS5_PROX:INTRON	NT5C2	ENSG00000076685.19	ENST00000675164.1:ENST00000343289.9:ENST00000404739.8:ENST00000675020.1:ENST00000674860.1:ENST00000676449.1:ENST00000676428.1:ENST00000674728.1:ENST00000675811.1:ENST00000369857.9:ENST00000675040.1:ENST00000675436.1:ENST00000674696.1:ENST00000675326.1:ENST00000675645.1:ENST00000470299.2:ENST00000452156.5:ENST00000461461.5:ENST00000467380.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	33	2	1.91817	2.07576	2.23335	0.0634557	0.0459211	0.177047	0.164984
chr11	18630415	18630515	4933805	0	-	0.48	(0.476,0.515]	chr11	462117	131	INTRON	INTRON	SPTY2D1	ENSG00000179119.15	ENST00000336349.6:ENST00000536336.5:ENST00000543776.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	33	2	1.91817	2.07576	2.23335	0.0634557	0.0459211	0.177047	0.164984
chr6	119338269	119338369	3205701	0	-	0.31	(0.28,0.32]	chr6	298328	309	INTRON	INTRON	MAN1A1	ENSG00000111885.7	ENST00000368468.4	protein_coding	protein_coding	protein_coding	protein_coding	5	69	2	1.72279	2.075735	2.42868	0.0496859	0.0105331	0.156383	0.0908969
chr1	193221340	193221440	285619	0	+	0.26	[0,0.28]	chr1	32840	85	INTRON	INTRON	CDC73	ENSG00000134371.14	ENST00000649895.1:ENST00000643006.1:ENST00000367435.5:ENST00000650197.1:ENST00000648071.1:ENST00000635846.1:ENST00000649613.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	59	2	1.88025	2.07572	2.27119	0.070351	0.029906	0.184298	0.142135
chr2	171536837	171536936	917470	0	+	0.373737	(0.35,0.378]	chr2	101030	132	INTRON	INTRON	CYBRD1	ENSG00000071967.12	ENST00000409484.5:ENST00000468308.1:ENST00000321348.9:ENST00000375252.3:ENST00000474182.1:ENST00000494587.1:ENST00000445146.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	49	2	1.75561	2.07572	2.39583	0.0739399	0.0107976	0.190914	0.0920575
chr7	105371551	105371651	3603732	0	-	0.45	(0.44,0.476]	chr7	336161	646	INTRON	INTRON	SRPK2	ENSG00000135250.17	ENST00000393651.8:ENST00000482897.5:ENST00000460391.5:ENST00000462282.5:ENST00000465112.5:ENST00000482862.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	12	125	2	2.01434	2.07572	2.1371000000000002	0.00461697	0.00205988	0.0598455	0.0420839
chr19	972561	972661	6992966	0	+	0.36	(0.35,0.378]	chr19	692440	6	UTR3	UTR3:EXON_MRNA	ARID3A	ENSG00000116017.11	ENST00000263620.8	protein_coding	protein_coding	protein_coding	protein_coding	16	177	2	1.70065	2.075605	2.45056	0.00831433	4.41953e-4	0.0774402	0.019019
chr9	109089032	109089131	4312291	0	-	0.474747	(0.44,0.476]	chr9	396368	13	INTRON	INTRON	TMEM245	ENSG00000106771.13	ENST00000374586.8:ENST00000491854.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	75	2	1.20796	2.0755850000000002	2.94321	0.0783119	0.00111162	0.197588	0.0305384
chr5	132759007	132759107	2723755	0	-	0.31	(0.28,0.32]	chr5	256120	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	SEPTIN8	ENSG00000164402.14	ENST00000378719.7:ENST00000481030.1:ENST00000378721.8:ENST00000296873.11:ENST00000448933.5:ENST00000620483.4:ENST00000378706.5:ENST00000378699.6:ENST00000378701.5:ENST00000458488.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	174	2	1.6541	2.07556	2.49702	0.0194458	4.57941e-4	0.1093	0.0193643
chr12	79780147	79780247	5374944	0	-	0.39	(0.378,0.408]	chr12	512641	9	EXON_MRNA	EXON_MRNA:INTRON	PPP1R12A	ENSG00000058272.19	ENST00000261207.9:ENST00000450142.7:ENST00000437004.6:ENST00000546762.5:ENST00000634739.1:ENST00000550903.5:ENST00000550299.5:ENST00000550351.5:ENST00000547253.5:ENST00000546369.5:ENST00000550107.5:ENST00000548908.3:ENST00000552892.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	58	2	1.76032	2.0754	2.39048	0.0721577	0.00395852	0.187433	0.057511
chr5	79615858	79615955	2398759	0	+	0.463918	(0.44,0.476]	chr5	231681	3	INTRON	INTRON	TENT2	ENSG00000164329.14	ENST00000505571.5:ENST00000423041.6:ENST00000504233.5:ENST00000453514.6:ENST00000428308.6:ENST00000515807.5:ENST00000296783.7:ENST00000514095.5:ENST00000508620.5:ENST00000503620.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	17	168	2	1.59042	2.07533	2.56024	0.0101604	2.08065e-4	0.0850389	0.0125875
chrX	151954305	151954404	7908417	0	-	0.454545	(0.44,0.476]	chrX	804766	13	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	GABRE	ENSG00000102287.19	ENST00000370328.4:ENST00000486255.1:ENST00000483564.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	74	2	1.72421	2.07532	2.42643	0.0285163	0.0033369	0.12666	0.0528877
chr5	151793060	151793155	2522021	0	+	0.4	(0.378,0.408]	chr5	241329	10	EXON_MRNA	EXON_MRNA:INTRON	G3BP1	ENSG00000145907.16	ENST00000678070.1:ENST00000678964.1:ENST00000678925.1:ENST00000394123.7:ENST00000676978.1:ENST00000679289.1:ENST00000677493.1:ENST00000676644.1:ENST00000677757.1:ENST00000522761.6:ENST00000676827.1:ENST00000520177.6:ENST00000676634.1:ENST00000678854.1:ENST00000677602.1:ENST00000676911.1:ENST00000356245.8:ENST00000678646.1:ENST00000677381.1:ENST00000678904.1:ENST00000678910.1:ENST00000678101.1:ENST00000677105.1:ENST00000676813.1:ENST00000522367.6:ENST00000517947.5:ENST00000507878.7:ENST00000678369.1:ENST00000677433.1:ENST00000678564.1:ENST00000677923.1:ENST00000677323.1:ENST00000522666.1:ENST00000679057.1:ENST00000678750.1:ENST00000677687.1:ENST00000678372.1:ENST00000677211.1:ENST00000676590.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	64	2	1.89052	2.075305	2.26009	0.0188651	0.0148147	0.108861	0.106702
chr15	77361374	77361474	6237046	0	-	0.41	(0.408,0.44]	chr15	595309	149	INTRON	INTRON	PEAK1	ENSG00000173517.11	ENST00000560626.6:ENST00000682557.1:ENST00000558305.5:ENST00000564328.5:ENST00000567808.5:ENST00000567337.5:ENST00000569159.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	54	2	1.9831	2.0752800000000002	2.16746	0.024436	0.018491	0.12011	0.116694
chr1	212896283	212896382	310232	0	+	0.40404	(0.378,0.408]	chr1	35838	11	UTR3	UTR3:EXON_MRNA	FLVCR1	ENSG00000162769.13	ENST00000366971.9	protein_coding	protein_coding	protein_coding	protein_coding	8	63	2	1.2488	2.0752099999999998	2.90162	0.0562531	0.0113157	0.184145	0.0886121
chr1	155681350	155681449	563250	0	-	0.393939	(0.378,0.408]	chr1	67204	5	INTRON	INTRON	YY1AP1	ENSG00000163374.20	ENST00000368339.9:ENST00000295566.8:ENST00000368330.6:ENST00000436865.5:ENST00000359205.9:ENST00000407221.5:ENST00000404643.5:ENST00000361140.8:ENST00000361831.9:ENST00000347088.9:ENST00000354691.9:ENST00000368340.9:ENST00000311573.9:ENST00000355499.9:ENST00000405763.7:ENST00000476093.5:ENST00000443231.5:ENST00000476027.5:ENST00000454523.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	11	121	2	1.82119	2.0751600000000003	2.32913	0.0214651	5.1601e-4	0.114274	0.0203753
chr11	68094338	68094437	4972325	0	-	0.494949	(0.476,0.515]	chr11	469432	46	INTRON	INTRON	CHKA	ENSG00000110721.12	ENST00000265689.9:ENST00000356135.9:ENST00000531341.1	protein_coding	protein_coding	protein_coding	protein_coding	5	48	2	1.82798	2.0751399999999998	2.3223	0.0519312	0.0184548	0.159306	0.116598
chr6	149767624	149767722	2996215	0	+	0.489796	(0.476,0.515]	chr6	280349	15	INTRON	INTRON	PCMT1	ENSG00000120265.19	ENST00000367384.7:ENST00000367378.6:ENST00000484601.6:ENST00000367380.9:ENST00000544496.5:ENST00000649295.1:ENST00000494411.6:ENST00000460828.6:ENST00000464889.7:ENST00000486585.2:ENST00000495487.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	48	2	1.82798	2.0751399999999998	2.3223	0.0519312	0.0184548	0.159306	0.116598
chr5	160101753	160101853	2759623	0	-	0.48	(0.476,0.515]	chr5	260436	73	INTRON	INTRON	PWWP2A	ENSG00000170234.13	ENST00000456329.7:ENST00000523662.1:ENST00000307063.9:ENST00000520662.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	68	2	1.69413	2.075055	2.45598	0.0200655	0.00945755	0.121043	0.0817766
chr9	131463870	131463968	4217679	0	+	0.489796	(0.476,0.515]	chr9	386778	42	INTRON	INTRON	PRRC2B	ENSG00000288701.1	ENST00000684596.1:ENST00000683519.1:ENST00000682501.1:ENST00000684736.1	protein_coding	protein_coding	protein_coding	protein_coding	7	68	2	1.69413	2.075055	2.45598	0.0200655	0.00945755	0.121043	0.0817766
chr16	85546070	85546170	6415291	0	+	0.53	(0.515,0.57]	chr16	615465	1868	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	5	46	2	1.69407	2.07496	2.45585	0.0459452	0.00797827	0.149888	0.0798772
chr6	166953718	166953816	3264293	0	-	0.520408	(0.515,0.57]	chr6	303043	13	EXON_MRNA	EXON_MRNA:INTRON	ENSG00000249141:RNASET2	ENSG00000249141.1:ENSG00000026297.17	ENST00000507747.1:ENST00000508775.6:ENST00000683770.1:ENST00000611959.2:ENST00000620173.5:ENST00000682774.1:ENST00000684236.1:ENST00000683968.1:ENST00000366855.10:ENST00000421787.5:ENST00000476238.6:ENST00000028008.9:ENST00000478180.6:ENST00000358165.7:ENST00000683158.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	46	2	1.69407	2.07496	2.45585	0.0459452	0.00797827	0.149888	0.0798772
chr18	59332690	59332790	6980767	0	-	0.39	(0.378,0.408]	chr18	690726	2	SS5_PROX	SS5_PROX:INTRON	LMAN1	ENSG00000074695.6	ENST00000251047.6:ENST00000587918.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	80	2	1.68393	2.074945	2.46596	0.0503034	0.00125753	0.156383	0.03295
chr19	3401810	3401909	6999979	0	+	0.464646	(0.44,0.476]	chr19	694173	192	INTRON	INTRON	NFIC	ENSG00000141905.19	ENST00000641145.1:ENST00000589123.5:ENST00000395111.7:ENST00000586919.5:ENST00000341919.7:ENST00000443272.3:ENST00000590282.5	protein_coding	protein_coding	protein_coding	protein_coding	3	33	2	1.85146	2.0749400000000002	2.29842	0.0552483	0.0545846	0.182529	0.165463
chr2	44446081	44446181	766181	0	+	0.46	(0.44,0.476]	chr2	86775	451	INTRON	INTRON	CAMKMT	ENSG00000143919.15	ENST00000378494.8:ENST00000402247.5:ENST00000407131.5:ENST00000403853.7:ENST00000428993.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	33	2	1.85146	2.0749400000000002	2.29842	0.0552483	0.0545846	0.182529	0.165463
chr5	173026116	173026215	2548594	0	+	0.464646	(0.44,0.476]	chr5	243304	53	INTRON	INTRON	ATP6V0E1	ENSG00000113732.9	ENST00000519374.6:ENST00000519911.5:ENST00000265093.4	protein_coding	protein_coding	protein_coding	protein_coding	3	33	2	1.85146	2.0749400000000002	2.29842	0.0552483	0.0545846	0.182529	0.165463
chr5	148387676	148387775	2516226	0	+	0.393939	(0.378,0.408]	chr5	240440	22	INTRON	INTRON	FBXO38	ENSG00000145868.17	ENST00000296701.10:ENST00000503613.5:ENST00000340253.10:ENST00000394370.7:ENST00000508326.5:ENST00000509411.5:ENST00000511080.5:ENST00000504971.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	36	2	1.88729	2.0749049999999998	2.26252	0.056222	0.0532327	0.18407	0.162538
chr20	49281557	49281651	7284636	0	+	0.329787	(0.32,0.35]	chr20	741060	2	SS3_PROX	SS3_PROX:INTRON	ZFAS1	ENSG00000177410.13	ENST00000371743.8:ENST00000417721.5:ENST00000441722.5:ENST00000450535.5:ENST00000458653.5:ENST00000428008.6:ENST00000620594.2:ENST00000652916.1:ENST00000326677.9:ENST00000659056.1	lncRNA	lncRNA	lncRNA	lncRNA	10	125	2	1.96679	2.07489	2.18299	0.00700351	0.00505063	0.0718189	0.0646039
chr3	195697473	195697569	1593846	0	+	0.572917	(0.57,1]	chr3	165103	5	INTRON	INTRON	MUC20-OT1	ENSG00000242086.8	ENST00000451982.6:ENST00000628917.2:ENST00000625358.2:ENST00000602127.5:ENST00000627502.2:ENST00000597034.5:ENST00000629823.2:ENST00000630243.2:ENST00000627718.2:ENST00000631366.2:ENST00000630170.2:ENST00000626569.2:ENST00000631189.2:ENST00000599448.5:ENST00000597482.5:ENST00000598992.5:ENST00000420851.6:ENST00000626870.2:ENST00000630417.2:ENST00000627152.2:ENST00000594715.5:ENST00000431767.5:ENST00000630863.2:ENST00000629686.2:ENST00000627562.2:ENST00000628547.2:ENST00000627363.2:ENST00000631105.2:ENST00000628823.2:ENST00000625776.2:ENST00000451228.5:ENST00000451216.6:ENST00000626617.2:ENST00000628301.2:ENST00000626178.2:ENST00000620737.3:ENST00000626007.2	lncRNA	lncRNA	lncRNA	lncRNA	15	75	2	1.58277	2.074875	2.56698	0.00838958	2.40979e-4	0.0774835	0.0136674
chr1	8646274	8646374	372066	0	-	0.43	(0.408,0.44]	chr1	43533	215	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000400907.6:ENST00000656437.1:ENST00000659924.1:ENST00000480342.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	45	2	2.00228	2.0747999999999998	2.14732	0.0389732	0.0237354	0.143072	0.129075
chr16	23850866	23850966	6323907	0	+	0.34	(0.32,0.35]	chr16	605693	131	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000498058.1:ENST00000645517.1:ENST00000498739.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	82	2	1.96868	2.0747999999999998	2.18092	0.0256608	0.00749728	0.120491	0.0773151
chr19	19437118	19437218	7035662	0	+	0.42	(0.408,0.44]	chr19	701448	5	INTRON	INTRON	GATAD2A	ENSG00000167491.18	ENST00000494516.6:ENST00000360315.7:ENST00000609040.5:ENST00000417582.6:ENST00000683918.1:ENST00000432704.5:ENST00000404158.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	45	2	2.00228	2.0747999999999998	2.14732	0.0389732	0.0237354	0.143072	0.129075
chr15	65766164	65766262	6209532	0	-	0.530612	(0.515,0.57]	chr15	592611	44	INTRON	INTRON	DENND4A	ENSG00000174485.16	ENST00000443035.8:ENST00000431932.6:ENST00000564674.5:ENST00000568515.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	69	2	1.14264	2.0747850000000003	3.00693	0.0774783	7.26845e-4	0.196285	0.0245647
chr5	139313885	139313984	2499585	0	+	0.373737	(0.35,0.378]	chr5	238922	40	EXON_MRNA	EXON_MRNA:INTRON	MATR3	ENSG00000280987.4:ENSG00000015479.20	ENST00000509990.5:ENST00000506147.5:ENST00000512107.5:ENST00000361059.7:ENST00000394800.6:ENST00000502929.5:ENST00000504203.5:ENST00000509644.5:ENST00000512876.5:ENST00000513678.5:ENST00000513121.1:ENST00000504045.5:ENST00000504311.5:ENST00000502499.5:ENST00000510056.5:ENST00000511249.5:ENST00000394805.8:ENST00000507860.1:ENST00000509918.5:ENST00000503811.5:ENST00000511978.5:ENST00000618441.5:ENST00000514528.5:ENST00000504643.5:ENST00000515833.2:ENST00000514402.1:ENST00000505625.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	17	182	2	2.04181	2.07477	2.10773	0.00514472	7.69025e-4	0.062965	0.0255006
chr7	158643691	158643788	3688148	0	-	0.309278	(0.28,0.32]	chr7	342113	18	INTRON	INTRON	NCAPG2	ENSG00000146918.20	ENST00000356309.8:ENST00000432615.5:ENST00000409423.5:ENST00000441982.5:ENST00000467785.5:ENST00000409339.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	133	2	1.99459	2.074735	2.15488	0.0142587	0.00247056	0.0963352	0.0460067
chr10	21712340	21712440	4406215	0	+	0.41	(0.408,0.44]	chr10	406547	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	MLLT10	ENSG00000078403.17	ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000651298.1:ENST00000377059.7:ENST00000651382.1:ENST00000438473.6:ENST00000420525.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	46	2	1.49523	2.074715	2.6542	0.0534846	0.0227514	0.180041	0.117618
chr3	177079078	177079178	1871248	0	-	0.44	(0.408,0.44]	chr3	187372	3	SS3_PROX	SS3_PROX:INTRON	TBL1XR1	ENSG00000177565.18	ENST00000457928.7:ENST00000430069.5:ENST00000673974.1:ENST00000631253.2:ENST00000352800.10:ENST00000422442.6:ENST00000428970.5:ENST00000424913.5:ENST00000437738.5:ENST00000431421.5:ENST00000635794.1:ENST00000630796.2:ENST00000450267.5:ENST00000630833.2:ENST00000431674.5:ENST00000422066.5:ENST00000443315.5:ENST00000627825.2:ENST00000427349.5:ENST00000413084.5:ENST00000637137.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	46	2	1.49523	2.074715	2.6542	0.0534846	0.0227514	0.180041	0.117618
chr11	9212221	9212321	4908540	0	-	0.37	(0.35,0.378]	chr11	460107	42	INTRON	INTRON	DENND5A	ENSG00000184014.9	ENST00000328194.8:ENST00000681203.1:ENST00000530780.2:ENST00000679999.1:ENST00000680470.1:ENST00000680554.1:ENST00000681425.1:ENST00000679568.1:ENST00000679446.1:ENST00000680294.1:ENST00000680742.1:ENST00000680885.1:ENST00000530044.5:ENST00000526707.5:ENST00000532696.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	36	2	1.90405	2.0747	2.24535	0.0647516	0.0482651	0.179192	0.171852
chr6	167853574	167853673	3034604	0	+	0.363636	(0.35,0.378]	chr6	282711	253	INTRON	INTRON	AFDN	ENSG00000130396.21	ENST00000683244.1:ENST00000400825.8:ENST00000351017.9:ENST00000344191.8:ENST00000392112.5:ENST00000392108.7:ENST00000400824.8:ENST00000400822.7:ENST00000447894.6:ENST00000366809.6:ENST00000366806.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	36	2	1.90405	2.0747	2.24535	0.0647516	0.0482651	0.179192	0.171852
chr21	38021715	38021815	7463098	0	-	0.32	(0.28,0.32]	chr21	760277	112	INTRON	INTRON	DSCR4	ENSG00000184029.9	ENST00000398948.5	lncRNA	lncRNA	lncRNA	lncRNA	6	79	2	1.96841	2.074665	2.18092	0.0271832	0.0124199	0.123904	0.0973643
chr12	64444078	64444177	5153306	0	+	0.333333	(0.32,0.35]	chr12	487839	44	INTRON	INTRON	XPOT	ENSG00000184575.12	ENST00000332707.10	protein_coding	protein_coding	protein_coding	protein_coding	5	63	2	2.04237	2.0746599999999997	2.10695	0.0375542	0.0127483	0.140222	0.0987441
chr4	2911217	2911316	1915721	0	+	0.50505	(0.476,0.515]	chr4	192335	14	INTRON	INTRON	ADD1	ENSG00000087274.19	ENST00000683351.1:ENST00000398125.5:ENST00000264758.11:ENST00000513328.6:ENST00000503455.6:ENST00000355842.7:ENST00000651918.1:ENST00000398129.5:ENST00000398123.6:ENST00000514940.5:ENST00000541051.5:ENST00000513762.2:ENST00000536424.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	40	2	1.74317	2.074625	2.40608	0.0425709	0.0396373	0.161534	0.148082
chr1	171579153	171579253	254180	0	+	0.38	(0.378,0.408]	chr1	30239	4	SS3_PROX	SS3_PROX:INTRON	PRRC2C	ENSG00000117523.18	ENST00000647382.2:ENST00000367742.7:ENST00000338920.8:ENST00000426496.6:ENST00000495585.1:ENST00000644916.1	protein_coding	protein_coding	protein_coding	protein_coding	5	56	2	1.63458	2.07461	2.51464	0.0573057	0.00684341	0.167723	0.0748032
chr7	129040156	129040256	3636433	0	-	0.58	(0.57,1]	chr7	338142	216	INTRON	INTRON	TNPO3	ENSG00000064419.14	ENST00000627585.2:ENST00000265388.10:ENST00000471234.5:ENST00000482320.5:ENST00000471166.1	protein_coding	protein_coding	protein_coding	protein_coding	7	36	2	1.2666	2.074605	2.88261	0.0788045	0.00118949	0.198736	0.031662
chr7	157382311	157382377	3455769	0	+	0.409091	(0.408,0.44]	chr7	323104	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	DNAJB6	ENSG00000105993.15	ENST00000441561.5:ENST00000429029.6:ENST00000262177.9:ENST00000417758.5:ENST00000459889.5:ENST00000443280.5:ENST00000634080.1:ENST00000468928.5:ENST00000465908.5:ENST00000487480.1:ENST00000486247.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	54	2	1.70933	2.074605	2.43988	0.0398236	0.0189186	0.143072	0.118303
chr13	79397604	79397704	5626323	0	-	0.47	(0.44,0.476]	chr13	536667	183	INTRON	INTRON	RBM26	ENSG00000139746.16	ENST00000438737.3:ENST00000438724.5:ENST00000622611.4:ENST00000267229.11:ENST00000472143.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	11	118	2	1.41577	2.07458	2.73339	0.042743	1.37991e-4	0.148082	0.0101125
chr11	66621536	66621634	4810848	0	+	0.520408	(0.515,0.57]	chr11	447861	2	INTRON	INTRON	RBM14-RBM4:RBM14	ENSG00000248643.5:ENSG00000239306.5	ENST00000412278.2:ENST00000393979.3:ENST00000511114.1:ENST00000310137.5:ENST00000409372.1:ENST00000421355.1:ENST00000443702.1:ENST00000500635.2:ENST00000409738.4:ENST00000461478.1:ENST00000496694.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	33	285	2	1.90214	2.0745649999999998	2.24699	5.45409e-4	1.29413e-4	0.0212377	0.0103426
chr1	234607324	234607412	661468	0	-	0.647727	(0.57,1]	chr1	78270	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	IRF2BP2	ENSG00000168264.11	ENST00000366609.4:ENST00000366610.7:ENST00000491430.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	39	2	1.34554	2.074525	2.80351	0.0508971	0.00172505	0.176247	0.0374701
chr3	48937495	48937595	1421641	0	+	0.33	(0.32,0.35]	chr3	149480	93	INTRON	INTRON	ARIH2	ENSG00000177479.20	ENST00000478224.5:ENST00000430423.5:ENST00000452882.5:ENST00000498314.5:ENST00000474618.5:ENST00000449376.5:ENST00000490095.5:ENST00000356401.9:ENST00000495761.5:ENST00000483333.5:ENST00000482427.5:ENST00000488963.5:ENST00000420814.5:ENST00000486316.5:ENST00000474936.6:ENST00000484999.5:ENST00000470296.5:ENST00000463204.5:ENST00000452385.5:ENST00000495507.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	54	2	1.63843	2.0745199999999997	2.51061	0.0364463	0.0360919	0.152563	0.138959
chr1	55145100	55145199	465175	0	-	0.343434	(0.32,0.35]	chr1	56183	5	INTRON	INTRON	USP24	ENSG00000162402.14	ENST00000294383.7	protein_coding	protein_coding	protein_coding	protein_coding	5	63	2	1.88255	2.074475	2.2664	0.0269187	0.0199969	0.135288	0.109608
chr10	60784029	60784116	4435824	0	+	0.344828	(0.32,0.35]	chr10	409174	6	INTRON	INTRON	CDK1	ENSG00000170312.17	ENST00000519078.6:ENST00000475504.6:ENST00000316629.8:ENST00000395284.8:ENST00000448257.6:ENST00000373809.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	63	2	1.88255	2.074475	2.2664	0.0269187	0.0199969	0.135288	0.109608
chr12	104300580	104300680	5210146	0	+	0.33	(0.32,0.35]	chr12	493210	91	INTRON	INTRON	TXNRD1	ENSG00000198431.17	ENST00000525566.6:ENST00000526266.5:ENST00000503506.6:ENST00000526691.5:ENST00000531691.5:ENST00000526390.5:ENST00000531689.5:ENST00000529546.5:ENST00000529751.1:ENST00000528079.6:ENST00000526580.5:ENST00000529784.5:ENST00000524698.5:ENST00000527688.5:ENST00000527335.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	63	2	1.88255	2.074475	2.2664	0.0269187	0.0199969	0.135288	0.109608
chr7	121172335	121172435	3395492	0	+	0.29	(0.28,0.32]	chr7	317781	223	INTRON	INTRON	CPED1	ENSG00000106034.18	ENST00000310396.10:ENST00000450913.6:ENST00000423795.5:ENST00000466055.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	79	2	1.64429	2.074455	2.50462	0.0365539	0.0102735	0.153932	0.0850389
chr7	129850296	129850396	3636933	0	-	0.44	(0.408,0.44]	chr7	338182	106	INTRON	INTRON	UBE2H	ENSG00000186591.13	ENST00000355621.8:ENST00000649897.1:ENST00000473814.6:ENST00000496698.5:ENST00000472396.5:ENST00000480245.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	90	2	1.74225	2.07443	2.40661	0.011475	0.00710219	0.0888882	0.0756104
chr19	15316239	15316339	7147243	0	-	0.5	(0.476,0.515]	chr19	721965	359	INTRON	INTRON	BRD4	ENSG00000141867.19	ENST00000679869.1:ENST00000360016.9:ENST00000594841.5:ENST00000597315.5:ENST00000601941.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	41	2	1.91525	2.0743	2.23335	0.0634557	0.0232571	0.177047	0.127416
chr6	75627828	75627927	2905206	0	+	0.515152	(0.476,0.515]	chr6	274500	35	INTRON	INTRON	SENP6	ENSG00000112701.18	ENST00000370010.6:ENST00000447266.7:ENST00000327284.12:ENST00000493959.6:ENST00000483859.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	41	2	1.91525	2.0743	2.23335	0.0634557	0.0232571	0.177047	0.127416
chr9	128170407	128170507	4357630	0	-	0.41	(0.408,0.44]	chr9	400261	3	SS3_PROX	SS3_PROX:INTRON	CIZ1	ENSG00000148337.22	ENST00000651955.1:ENST00000372938.10:ENST00000372954.5:ENST00000538431.5:ENST00000357558.9:ENST00000629610.2:ENST00000372948.7:ENST00000277465.8:ENST00000634901.1:ENST00000415526.5:ENST00000471839.5:ENST00000476727.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	54	2	1.93002	2.0742950000000002	2.21857	0.022095	0.0209591	0.123903	0.112046
chr7	76049844	76049943	3339670	0	+	0.585859	(0.57,1]	chr7	310990	9	INTRON	INTRON	MDH2	ENSG00000146701.12	ENST00000443006.5:ENST00000315758.10:ENST00000461665.5:ENST00000432020.2:ENST00000490105.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	39	2	1.55956	2.07427	2.58898	0.0448639	0.00134929	0.149888	0.0338207
chr13	112697510	112697610	5546325	0	+	0.38	(0.378,0.408]	chr13	529917	2	INTRON	INTRON	ATP11A	ENSG00000068650.19	ENST00000375645.8:ENST00000375630.6:ENST00000487903.5:ENST00000419448.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	68	2	2.04622	2.07417	2.10212	0.0149927	0.0141232	0.107704	0.0959618
chr9	125301782	125301882	4198659	0	+	0.33	(0.32,0.35]	chr9	383169	4	SS3_PROX	SS3_PROX:INTRON	GAPVD1	ENSG00000165219.23	ENST00000497580.5:ENST00000461379.5:ENST00000297933.11:ENST00000394084.5:ENST00000470056.5:ENST00000394105.6:ENST00000394083.6:ENST00000495955.5:ENST00000467750.5:ENST00000394104.6:ENST00000312123.13	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	40	2	1.83416	2.074105	2.31405	0.0631198	0.0517107	0.176946	0.176696
chr21	44053555	44053651	7415447	0	+	0.375	(0.35,0.378]	chr21	755801	7	INTRON	INTRON	TRAPPC10	ENSG00000160218.13	ENST00000291574.9:ENST00000380221.7:ENST00000422875.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	59	2	1.98929	2.07403	2.15877	0.0417909	0.0102036	0.147075	0.089002
chr1	1256491	1256558	359011	0	-	0.626866	(0.57,1]	chr1	41435	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	UBE2J2	ENSG00000160087.21	ENST00000450390.6:ENST00000349431.11:ENST00000347370.6:ENST00000400929.6:ENST00000464036.5:ENST00000360466.6:ENST00000400930.8:ENST00000473215.5:ENST00000435198.5:ENST00000509720.5:ENST00000491779.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	39	2	2.06823	2.073895	2.07956	0.013114	0.00680672	0.0998629	0.0711884
chr10	75219656	75219756	4464430	0	+	0.58	(0.57,1]	chr10	411830	3	SS5_PROX	SS5_PROX:INTRON	VDAC2	ENSG00000165637.14	ENST00000543351.5:ENST00000298468.9:ENST00000344036.8:ENST00000472137.5:ENST00000332211.11:ENST00000475142.5:ENST00000481876.5:ENST00000313132.8:ENST00000498394.5:ENST00000468285.1:ENST00000447677.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	39	2	2.06823	2.073895	2.07956	0.013114	0.00680672	0.0998629	0.0711884
chr11	759721	759821	4720462	0	+	0.48	(0.476,0.515]	chr11	436407	2	SS3_PROX	SS3_PROX:INTRON	TALDO1	ENSG00000177156.11	ENST00000528070.5:ENST00000528097.5:ENST00000530440.1:ENST00000319006.8:ENST00000530119.5:ENST00000533796.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	34	2	1.86492	2.0737799999999997	2.28264	0.0550347	0.0534132	0.179876	0.165463
chr17	45042102	45042201	6782012	0	-	0.494949	(0.476,0.515]	chr17	669007	67	INTRON	INTRON	DCAKD	ENSG00000172992.13	ENST00000342350.10:ENST00000452796.7:ENST00000651974.1:ENST00000310604.9:ENST00000688601.1:ENST00000614054.5:ENST00000687739.1:ENST00000688897.1:ENST00000687955.1:ENST00000688577.1:ENST00000588499.6:ENST00000684999.1:ENST00000692180.1:ENST00000693065.1:ENST00000691739.1:ENST00000687525.1:ENST00000686754.1:ENST00000687463.1:ENST00000685712.1:ENST00000592902.6:ENST00000685986.1:ENST00000692907.1:ENST00000689764.1:ENST00000687414.1:ENST00000693328.1:ENST00000688568.1:ENST00000588295.2:ENST00000593094.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	34	2	1.86492	2.0737799999999997	2.28264	0.0550347	0.0534132	0.179876	0.165463
chr6	28838025	28838123	3075367	0	-	0.489796	(0.476,0.515]	chr6	285914	9	EXON_LNCRNA	EXON_LNCRNA	ENSG00000225173	ENSG00000225173.2	ENST00000457253.2	lncRNA	lncRNA	lncRNA	lncRNA	3	34	2	1.86492	2.0737799999999997	2.28264	0.0550347	0.0534132	0.179876	0.165463
chr12	56683589	56683688	5336034	0	-	0.545455	(0.515,0.57]	chr12	510192	102	INTRON	INTRON	PTGES3	ENSG00000110958.16	ENST00000537473.2:ENST00000614328.4:ENST00000262033.11:ENST00000414274.7:ENST00000436399.6:ENST00000448157.6:ENST00000456859.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	46	2	1.63184	2.073725	2.51561	0.0545832	0.00635044	0.165292	0.0723103
chr6	107420602	107420702	3181524	0	-	0.37	(0.35,0.378]	chr6	296346	859	INTRON	INTRON	PDSS2	ENSG00000164494.12	ENST00000369037.9:ENST00000369031.4	protein_coding	protein_coding	protein_coding	protein_coding	5	59	2	1.82281	2.073725	2.32464	0.0316938	0.0159285	0.144635	0.101453
chr1	162566748	162566848	238370	0	+	0.45	(0.44,0.476]	chr1	28703	4	SS5_PROX	SS5_PROX:INTRON	UAP1	ENSG00000117143.14	ENST00000367925.6:ENST00000367926.9	protein_coding	protein_coding	protein_coding	protein_coding	6	66	2	2.00165	2.07369	2.14573	0.0238593	0.0109867	0.129075	0.0873897
chr3	37294478	37294578	1396272	0	+	0.53	(0.515,0.57]	chr3	146358	1	SS3_PROX	SS3_PROX:INTRON	GOLGA4	ENSG00000144674.17	ENST00000435830.6:ENST00000444882.5:ENST00000356847.8:ENST00000450863.6:ENST00000361924.7:ENST00000429018.5:ENST00000419177.3:ENST00000437131.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	46	2	1.81744	2.073555	2.32967	0.031028	0.0133671	0.143457	0.0946278
chr10	74113293	74113390	4455679	0	+	0.391753	(0.378,0.408]	chr10	411503	8	INTRON	INTRON	VCL	ENSG00000035403.18	ENST00000623461.3:ENST00000372755.7:ENST00000624354.3:ENST00000211998.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	42	2	1.8374	2.073505	2.30961	0.055088	0.0299228	0.165463	0.142135
chr16	70257033	70257133	6510148	0	-	0.49	(0.476,0.515]	chr16	630524	13	EXON_MRNA	EXON_MRNA:INTRON	AARS1	ENSG00000090861.17	ENST00000674963.1:ENST00000675643.1:ENST00000675917.1:ENST00000674691.1:ENST00000261772.13:ENST00000675569.1:ENST00000676209.1:ENST00000676211.1:ENST00000676040.1:ENST00000675953.1:ENST00000675691.1:ENST00000676004.1:ENST00000675270.1:ENST00000675403.1:ENST00000676212.1:ENST00000675045.1:ENST00000675035.1:ENST00000676168.1:ENST00000674652.1:ENST00000675133.1:ENST00000675120.1:ENST00000674811.1:ENST00000674512.1:ENST00000675853.1:ENST00000565361.3:ENST00000676247.1:ENST00000674848.1:ENST00000674962.1:ENST00000675371.1:ENST00000675986.1:ENST00000674768.1:ENST00000675297.1:ENST00000675751.1:ENST00000564359.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	84	2	1.93059	2.07349	2.21639	0.023762	0.00224357	0.118822	0.0435144
chr6	35876636	35876736	3088372	0	-	0.37	(0.35,0.378]	chr6	288860	19	INTRON	INTRON	SRPK1	ENSG00000096063.16	ENST00000373825.7:ENST00000423325.6:ENST00000346162.10:ENST00000361690.7:ENST00000510290.5:ENST00000373821.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	15	161	2	1.46554	2.073405	2.68127	0.0209041	2.14499e-4	0.111894	0.0128548
chr11	17148138	17148238	4928476	0	-	0.42	(0.408,0.44]	chr11	461467	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	PIK3C2A	ENSG00000011405.14	ENST00000531428.1:ENST00000265970.11:ENST00000691414.1:ENST00000533645.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	10	105	2	1.91269	2.07332	2.23395	0.0153219	0.001262	0.100173	0.0329641
chr3	37244122	37244219	1395759	0	+	0.670103	(0.57,1]	chr3	146301	1	INTRON	INTRON	GOLGA4	ENSG00000144674.17	ENST00000435830.6:ENST00000444882.5:ENST00000356847.8:ENST00000450863.6:ENST00000361924.7:ENST00000429018.5:ENST00000431105.1:ENST00000419177.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	47	2	1.72382	2.07332	2.42282	0.00879576	0.00679121	0.0790073	0.0744032
chr22	19430359	19430456	7554412	0	-	0.381443	(0.378,0.408]	chr22	772321	2	INTRON	INTRON	HIRA:C22orf39	ENSG00000100084.14:ENSG00000242259.9	ENST00000263208.5:ENST00000340170.8:ENST00000509549.5:ENST00000452818.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	130	2	1.81973	2.0733	2.32687	0.0108435	8.01098e-4	0.0873034	0.0258804
chr3	160425873	160425973	1544883	0	+	0.29	(0.28,0.32]	chr3	160756	4	SS3_PROX	SS3_PROX:INTRON	SMC4	ENSG00000113810.16	ENST00000357388.8:ENST00000469762.5:ENST00000462787.5:ENST00000344722.5:ENST00000462668.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	57	2	2.00989	2.0732	2.13651	0.0427801	0.0265696	0.148082	0.134088
chr7	23194497	23194593	3289757	0	+	0.489583	(0.476,0.515]	chr7	305557	2	EXON_MRNA	EXON_MRNA:INTRON	NUP42	ENSG00000136243.18	ENST00000485250.5:ENST00000438012.5:ENST00000258742.10:ENST00000487595.5:ENST00000413919.1:ENST00000437140.5:ENST00000486136.5:ENST00000477844.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	69	2	1.87849	2.07319	2.26789	0.0176567	0.00992862	0.105233	0.0877296
chr9	97990753	97990852	4173113	0	+	0.272727	[0,0.28]	chr9	380269	57	INTRON	INTRON	ANP32B	ENSG00000136938.9	ENST00000339399.5:ENST00000473205.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	90	2	1.83992	2.073165	2.30641	0.0213596	0.0212029	0.123192	0.113755
chr11	2975131	2975229	4891820	0	-	0.418367	(0.408,0.44]	chr11	458333	25	INTRON	INTRON	NAP1L4	ENSG00000205531.13	ENST00000620138.4:ENST00000380542.9:ENST00000526115.5:ENST00000532325.6:ENST00000448187.5:ENST00000399614.6:ENST00000430811.5:ENST00000529361.5:ENST00000528968.5:ENST00000530064.5:ENST00000526842.5:ENST00000531291.5:ENST00000455338.6:ENST00000534372.1	protein_coding	protein_coding	protein_coding	protein_coding	12	110	2	1.57853	2.073145	2.56776	0.0118585	0.00227507	0.0962115	0.0426265
chr22	49585253	49585353	7601932	0	-	0.48	(0.476,0.515]	chr22	778566	1437	INTRON	INTRON	MIR3667HG	ENSG00000188511.13	ENST00000414287.5:ENST00000416411.1	lncRNA	lncRNA	lncRNA	lncRNA	10	96	2	1.61205	2.0731200000000003	2.53419	0.0155821	0.00251905	0.109411	0.0446195
chr11	5425155	5425255	4897471	0	-	0.31	(0.28,0.32]	chr11	459187	779	INTRON	INTRON	HBG2:ENSG00000239920:HBE1:OR51B5	ENSG00000196565.15:ENSG00000239920.2:ENSG00000213931.7:ENSG00000167355.8	ENST00000380252.6:ENST00000380259.7:ENST00000292896.3:ENST00000380237.5:ENST00000420726.6:ENST00000420465.6:ENST00000415970.6:ENST00000418729.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:nonsense_mediated_decay:processed_transcript	9	116	2	1.52831	2.072975	2.61764	0.0353864	0.00179526	0.137535	0.0392772
chr3	47686959	47687055	1684113	0	-	0.302083	(0.28,0.32]	chr3	172046	4	INTRON	INTRON	SMARCC1	ENSG00000173473.11	ENST00000254480.10:ENST00000425518.5:ENST00000462198.5:ENST00000485737.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	9	121	2	2.05785	2.07294	2.08803	0.0103533	0.00560246	0.085045	0.0678837
chr6	34384964	34385064	3084697	0	-	0.45	(0.44,0.476]	chr6	288633	426	INTRON	INTRON	NUDT3:RPS10-NUDT3	ENSG00000272325.2:ENSG00000270800.3	ENST00000607016.2:ENST00000639725.1:ENST00000639877.1:ENST00000605528.2	protein_coding	protein_coding	protein_coding	protein_coding	9	94	2	1.72944	2.07286	2.41628	0.0196145	0.00156262	0.109486	0.0365263
chr5	233940	234039	2312374	0	+	0.414141	(0.408,0.44]	chr5	223659	4	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	SDHA	ENSG00000073578.18	ENST00000504309.5:ENST00000505555.5:ENST00000510361.5:ENST00000264932.11:ENST00000504824.5:ENST00000514027.5:ENST00000515752.5:ENST00000512962.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	55	2	1.69566	2.072845	2.45003	0.0453922	0.00990006	0.164236	0.0838372
chr20	34032476	34032569	7258326	0	+	0.451613	(0.44,0.476]	chr20	737328	5	INTRON	INTRON	RALY	ENSG00000125970.12	ENST00000375114.7:ENST00000448364.5:ENST00000413297.5:ENST00000246194.8:ENST00000333552.9:ENST00000442805.1	protein_coding	protein_coding	protein_coding	protein_coding	8	87	2	1.88483	2.0728400000000002	2.26085	0.0149825	0.0039479	0.107704	0.0548259
chr14	102784161	102784261	5823996	0	+	0.36	(0.35,0.378]	chr14	552554	61	INTRON	INTRON	TRAF3	ENSG00000131323.16	ENST00000392745.8:ENST00000560371.5:ENST00000347662.8:ENST00000539721.5:ENST00000560463.5	protein_coding	protein_coding	protein_coding	protein_coding	6	71	2	2.03027	2.07279	2.11531	0.0185322	0.0119629	0.108861	0.0962115
chr8	140900657	140900757	4079065	0	-	0.46	(0.44,0.476]	chr8	370543	95	INTRON	INTRON	PTK2	ENSG00000169398.20	ENST00000696786.1:ENST00000522684.5:ENST00000395218.3:ENST00000521059.5:ENST00000517887.5:ENST00000519993.5:ENST00000340930.7:ENST00000519419.5:ENST00000524357.5:ENST00000521791.5:ENST00000523067.5:ENST00000520828.5:ENST00000520475.5:ENST00000519881.5:ENST00000520892.5:ENST00000523803.5:ENST00000521907.5:ENST00000517453.5:ENST00000520045.5:ENST00000521395.5:ENST00000523675.1:ENST00000521332.5:ENST00000524040.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	54	2	1.81283	2.072775	2.33272	0.0343005	0.0129984	0.135641	0.0991656
chr9	37125122	37125220	4117701	0	+	0.489796	(0.476,0.515]	chr9	375364	31	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000322831.6:ENST00000461038.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	93	2	1.56302	2.072775	2.58253	0.0127429	0.00600101	0.0987441	0.0674604
chr11	78410951	78411051	5000319	0	-	0.49	(0.476,0.515]	chr11	472472	465	INTRON	INTRON	GAB2	ENSG00000033327.13	ENST00000361507.5:ENST00000526030.1:ENST00000528886.5:ENST00000530915.1:ENST00000534823.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	74	2	1.48441	2.072765	2.66112	0.0315624	0.0044598	0.144381	0.0592169
chr17	75890300	75890395	6838958	0	-	0.536842	(0.515,0.57]	chr17	676085	15	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	TRIM65	ENSG00000141569.12	ENST00000591668.5:ENST00000592642.1:ENST00000269383.8:ENST00000648382.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	66	2	1.56838	2.072755	2.57713	0.0424458	0.00176427	0.161763	0.0376652
chr11	59575387	59575486	4954190	0	-	0.444444	(0.44,0.476]	chr11	465172	11	UTR3	UTR3:EXON_MRNA	OSBP	ENSG00000110048.12	ENST00000263847.6	protein_coding	protein_coding	protein_coding	protein_coding	8	82	2	1.85696	2.0727149999999996	2.28847	0.0107727	0.00692113	0.0920575	0.0718189
chr14	30984583	30984682	5857455	0	-	0.535354	(0.515,0.57]	chr14	556508	202	INTRON	INTRON	STRN3	ENSG00000196792.12	ENST00000355683.9:ENST00000357479.10:ENST00000555358.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	14	120	2	2.06425	2.0727	2.08115	0.00430805	9.60754e-4	0.0578073	0.028512
chr21	31706035	31706104	7437569	0	-	0.550725	(0.515,0.57]	chr21	758684	2	SS5_PROX	SS5_PROX:INTRON	SCAF4	ENSG00000156304.15	ENST00000286835.12:ENST00000399804.5:ENST00000434667.3:ENST00000485790.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	54	2	1.80447	2.07267	2.34087	0.0469761	0.00879341	0.151917	0.084878
chr12	104686967	104687067	5212988	0	+	0.43	(0.408,0.44]	chr12	493329	846	INTRON	INTRON	CHST11	ENSG00000171310.11	ENST00000303694.6:ENST00000549260.5:ENST00000549016.1	protein_coding	protein_coding	protein_coding	protein_coding	3	34	2	1.74775	2.072625	2.3975	0.0735403	0.040266	0.190238	0.161534
chr1	40376403	40376503	81470	0	+	0.36	(0.35,0.378]	chr1	10553	13	INTRON	INTRON	SMAP2	ENSG00000084070.12	ENST00000435168.6:ENST00000372718.8:ENST00000372708.5	protein_coding	protein_coding	protein_coding	protein_coding	7	81	2	1.71411	2.072595	2.43108	0.0310697	0.00345501	0.13151	0.0539802
chr10	74052522	74052621	4455047	0	+	0.50505	(0.476,0.515]	chr10	411397	90	INTRON	INTRON	VCL	ENSG00000035403.18	ENST00000623461.3:ENST00000372755.7:ENST00000624354.3:ENST00000211998.10:ENST00000478896.2:ENST00000461383.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	62	2	1.71266	2.07254	2.43242	0.0293304	0.0091895	0.128055	0.0855292
chr22	19420434	19420533	7554312	0	-	0.272727	[0,0.28]	chr22	772317	93	INTRON	INTRON	HIRA:C22orf39	ENSG00000100084.14:ENSG00000242259.9	ENST00000263208.5:ENST00000340170.8:ENST00000509549.5:ENST00000464189.5:ENST00000452818.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	95	2	1.82783	2.072495	2.31716	0.0410712	0.00702731	0.1451	0.0754576
chr18	209171	209271	6855346	0	+	0.26	[0,0.28]	chr18	679566	41	INTRON	INTRON	USP14	ENSG00000101557.15	ENST00000582707.5:ENST00000400266.7:ENST00000261601.8:ENST00000578942.5:ENST00000383589.6:ENST00000578786.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	58	2	1.75741	2.07249	2.38757	0.0552962	0.0424454	0.165463	0.161763
chr7	23463374	23463474	3503596	0	-	0.4	(0.378,0.408]	chr7	326910	322	INTRON	INTRON	IGF2BP3	ENSG00000136231.14	ENST00000258729.8:ENST00000421467.6:ENST00000468263.5:ENST00000491719.5:ENST00000476938.5:ENST00000468005.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	89	2	2.04798	2.0724299999999998	2.09688	0.00809949	0.00805155	0.0808864	0.0766625
chr7	23505460	23505558	3503678	0	-	0.316327	(0.28,0.32]	chr7	326929	8	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TRA2A	ENSG00000164548.12	ENST00000297071.9:ENST00000392502.8:ENST00000538367.6:ENST00000621813.4:ENST00000497730.1:ENST00000475970.1:ENST00000482395.1:ENST00000486934.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	44	554	2	1.87647	2.07234	2.26821	7.457e-4	4.33195e-4	0.0250126	0.0190829
chr12	123758521	123758619	5244573	0	+	0.44898	(0.44,0.476]	chr12	498660	6	UTR3	UTR3:EXON_MRNA	ATP6V0A2	ENSG00000185344.15	ENST00000330342.8:ENST00000543687.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	17	178	2	1.29637	2.072325	2.84828	0.0281587	6.46075e-5	0.137247	0.00711194
chr1	29086212	29086311	60702	0	+	0.282828	(0.28,0.32]	chr1	7763	17	INTRON	INTRON	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000373798.5:ENST00000649674.1:ENST00000343067.9:ENST00000349460.9:ENST00000646871.1:ENST00000488277.1:ENST00000490308.2:ENST00000650132.1:ENST00000649992.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	58	2	1.51776	2.07231	2.62686	0.0528371	0.0289217	0.178899	0.1274
chr17	75216647	75216741	6674375	0	+	0.319149	(0.28,0.32]	chr17	651375	4	INTRON	INTRON	NUP85	ENSG00000125450.11	ENST00000245544.9:ENST00000583948.5:ENST00000579324.5:ENST00000449421.6:ENST00000581104.5:ENST00000579298.5:ENST00000578830.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	58	2	1.51776	2.07231	2.62686	0.0528371	0.0289217	0.178899	0.1274
chr12	22632867	22632967	5094819	0	+	0.35	(0.32,0.35]	chr12	481224	68	INTRON	INTRON	ETNK1	ENSG00000139163.16	ENST00000671733.1:ENST00000335148.8:ENST00000672951.1:ENST00000266517.9:ENST00000538218.2:ENST00000673496.1:ENST00000673406.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	80	2	1.72098	2.07225	2.42352	0.0192903	0.0122807	0.119831	0.091087
chr7	97121395	97121495	3356995	0	+	0.34	(0.32,0.35]	chr7	313205	31	INTRON	INTRON	SDHAF3	ENSG00000196636.8	ENST00000432641.3:ENST00000489852.1:ENST00000360382.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	80	2	1.72098	2.07225	2.42352	0.0192903	0.0122807	0.119831	0.091087
chr1	246107213	246107313	676704	0	-	0.48	(0.476,0.515]	chr1	79721	109	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000391836.3:ENST00000453676.5:ENST00000462422.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	96	2	2.03337	2.0722300000000002	2.11109	0.00851546	0.00438713	0.0833995	0.0585064
chr2	20330234	20330332	1076579	0	-	0.397959	(0.378,0.408]	chr2	115035	25	INTRON	INTRON	PUM2	ENSG00000055917.16	ENST00000361078.7:ENST00000442400.5:ENST00000420234.5:ENST00000429419.6:ENST00000432105.5:ENST00000446940.5:ENST00000424110.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	56	2	2.00398	2.072135	2.14029	0.0393906	0.0106742	0.143072	0.0917199
chr9	65717597	65717696	4132244	0	+	0.30303	(0.28,0.32]	chr9	376527	83	INTRON	INTRON	CBWD5	ENSG00000147996.17	ENST00000377392.9:ENST00000377389.5:ENST00000476161.5:ENST00000497250.5:ENST00000480229.5:ENST00000430059.6:ENST00000382405.8:ENST00000429800.6:ENST00000486221.5:ENST00000465474.5:ENST00000377395.8:ENST00000476797.5:ENST00000489273.1:ENST00000485088.5:ENST00000468066.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	54	2	1.68409	2.072135	2.46018	0.0548665	0.0375904	0.165463	0.156054
chr12	51004287	51004387	5324560	0	-	0.36	(0.35,0.378]	chr12	507703	1	SS5_PROX	SS5_PROX:INTRON	SLC11A2	ENSG00000110911.17	ENST00000547688.7:ENST00000644495.1:ENST00000643884.1:ENST00000546636.5:ENST00000547198.5:ENST00000394904.9:ENST00000262052.9:ENST00000643123.1:ENST00000646740.1:ENST00000642227.1:ENST00000541174.6:ENST00000545993.7:ENST00000546743.5:ENST00000547510.5:ENST00000546488.5:ENST00000547579.5:ENST00000550714.5:ENST00000547732.5:ENST00000549110.5:ENST00000548193.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	67	2	1.81955	2.072095	2.32464	0.0194679	0.0159285	0.11986	0.101453
chrX	77902867	77902949	7684981	0	+	0.451219	(0.44,0.476]	chrX	786820	2	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	COX7B	ENSG00000131174.7	ENST00000373335.4:ENST00000475465.1:ENST00000650309.2:ENST00000647835.1	protein_coding	protein_coding	protein_coding	protein_coding	9	91	2	2.03524	2.0720799999999997	2.10892	0.0132897	0.00336403	0.0944742	0.053249
chr5	138785560	138785660	2497630	0	+	0.52	(0.515,0.57]	chr5	238721	18	INTRON	INTRON	CTNNA1	ENSG00000044115.21	ENST00000517980.5:ENST00000522227.5:ENST00000523912.5:ENST00000627109.2:ENST00000521724.5:ENST00000302763.12:ENST00000518910.5:ENST00000519309.5:ENST00000519113.5:ENST00000520158.5:ENST00000518825.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	64	2	1.65501	2.072015	2.48902	0.016231	0.00760558	0.109464	0.0749571
chr19	2780883	2780982	7116737	0	-	0.454545	(0.44,0.476]	chr19	715512	25	INTRON	INTRON	SGTA	ENSG00000104969.11	ENST00000221566.7:ENST00000678109.1:ENST00000676984.1:ENST00000677513.1:ENST00000676943.1:ENST00000677731.1:ENST00000679138.1:ENST00000677562.1:ENST00000678595.1:ENST00000677754.1:ENST00000677149.1:ENST00000678577.1:ENST00000589251.5:ENST00000586711.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	45	2	2.00609	2.0719399999999997	2.13779	0.0360127	0.0264596	0.152355	0.122506
chr8	22100972	22101041	3711961	0	+	0.318841	(0.28,0.32]	chr8	344602	1	EXON_MRNA	EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	FHIP2B	ENSG00000158863.22	ENST00000289921.8:ENST00000450006.7:ENST00000462914.3:ENST00000491733.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	96	2	1.83325	2.0719000000000003	2.31055	0.0199548	0.00834688	0.120668	0.0774402
chr8	17928548	17928647	3707782	0	+	0.313131	(0.28,0.32]	chr8	343815	7	INTRON	INTRON	PCM1	ENSG00000078674.19	ENST00000518930.1:ENST00000325083.13:ENST00000517730.5:ENST00000518537.5:ENST00000518936.5:ENST00000523055.5:ENST00000519253.5:ENST00000524226.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	106	2	2.06157	2.07189	2.08221	0.0189458	0.00506211	0.108861	0.0646039
chr2	108555442	108555541	846056	0	+	0.393939	(0.378,0.408]	chr2	94661	205	INTRON	INTRON	LIMS1	ENSG00000169756.17	ENST00000695516.1:ENST00000544547.6:ENST00000695517.1	protein_coding	protein_coding	protein_coding	protein_coding	5	56	2	1.8374	2.07184	2.30628	0.0299228	0.0163339	0.142135	0.101571
chr16	218851	218950	6426082	0	-	0.393939	(0.378,0.408]	chr16	617437	92	INTRON	INTRON	LUC7L	ENSG00000007392.17	ENST00000337351.8:ENST00000426094.5:ENST00000397783.5:ENST00000629543.2:ENST00000490762.5:ENST00000293872.13:ENST00000419516.5:ENST00000397780.5:ENST00000418978.5:ENST00000430864.5:ENST00000443357.5:ENST00000494366.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	119	2	2.04984	2.0717350000000003	2.09363	0.00513434	0.00321033	0.062965	0.0522684
chr11	86030870	86030968	5014459	0	-	0.438776	(0.408,0.44]	chr11	473014	42	INTRON	INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000630913.2:ENST00000528398.5:ENST00000356360.9:ENST00000534412.5:ENST00000531558.1:ENST00000531930.5:ENST00000532041.5:ENST00000525162.5:ENST00000528256.1:ENST00000528411.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	65	2	1.83501	2.071695	2.30838	0.0323448	0.00547703	0.133003	0.0671198
chr8	100934656	100934756	4005795	0	-	0.39	(0.378,0.408]	chr8	366665	4	SS5_PROX	SS5_PROX:INTRON	YWHAZ	ENSG00000164924.18	ENST00000395958.6:ENST00000395957.6:ENST00000457309.2:ENST00000395956.7:ENST00000353245.7:ENST00000521309.5:ENST00000522542.5:ENST00000522819.5:ENST00000395953.6:ENST00000395948.6:ENST00000395951.7:ENST00000419477.6:ENST00000521607.5:ENST00000480304.5:ENST00000518736.5:ENST00000517727.5:ENST00000521328.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	11	115	2	1.88781	2.07149	2.25517	0.00486383	0.00430492	0.0640618	0.0577899
chr11	47752643	47752719	4951267	0	-	0.486842	(0.476,0.515]	chr11	464435	4	SS5_PROX	SS5_PROX:INTRON	FNBP4	ENSG00000109920.13	ENST00000263773.10:ENST00000534003.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	47	2	1.73688	2.07148	2.40608	0.0425709	0.0252731	0.148082	0.133676
chr15	74936193	74936292	6222997	0	-	0.454545	(0.44,0.476]	chr15	594284	66	INTRON	INTRON	COX5A	ENSG00000178741.12	ENST00000322347.11:ENST00000567270.5:ENST00000562233.5:ENST00000568783.5:ENST00000568517.1:ENST00000564811.1	protein_coding	protein_coding	protein_coding	protein_coding	5	49	2	1.56252	2.071425	2.58033	0.0465207	0.0247511	0.151387	0.131869
chr12	122606211	122606310	5241439	0	+	0.393939	(0.378,0.408]	chr12	497848	4	INTRON	INTRON	KNTC1	ENSG00000184445.12	ENST00000450485.6:ENST00000333479.12:ENST00000436959.7:ENST00000546125.1	protein_coding	protein_coding	protein_coding	protein_coding	6	65	2	1.51223	2.0714	2.63057	0.051139	0.0053733	0.176696	0.0642754
chr19	28429049	28429149	7165433	0	-	0.61	(0.57,1]	chr19	724147	3	SS5_PROX	SS5_PROX:INTRON	ENSG00000260725	ENSG00000260725.1	ENST00000567877.1	lncRNA	lncRNA	lncRNA	lncRNA	12	66	2	1.9324	2.0713999999999997	2.2104	0.00747247	6.74507e-4	0.0772645	0.0237705
chr1	292161	292261	353518	0	-	0.47	(0.44,0.476]	chr1	40909	24	INTRON	INTRON	ENSG00000228463	ENSG00000228463.10	ENST00000441866.2:ENST00000424587.7	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	4	46	2	1.85146	2.07136	2.29126	0.0545846	0.0165638	0.182529	0.102621
chr16	84776911	84777010	6410695	0	+	0.474747	(0.44,0.476]	chr16	615352	13	INTRON	INTRON	USP10	ENSG00000103194.16	ENST00000540269.6:ENST00000219473.12:ENST00000570191.5:ENST00000563048.5:ENST00000569925.1:ENST00000567526.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	46	2	1.85146	2.07136	2.29126	0.0545846	0.0165638	0.182529	0.102621
chr3	198197447	198197547	1600137	0	+	0.45	(0.44,0.476]	chr3	165892	67	INTRON	INTRON	FAM157A	ENSG00000236438.7	ENST00000634862.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	4	46	2	1.85146	2.07136	2.29126	0.0545846	0.0165638	0.182529	0.102621
chr6	34239257	34239357	2848129	0	+	0.43	(0.408,0.44]	chr6	269048	3	SS5_PROX	SS5_PROX:INTRON	HMGA1	ENSG00000137309.20	ENST00000347617.10:ENST00000401473.7:ENST00000311487.9:ENST00000447654.5:ENST00000674029.1:ENST00000478214.1:ENST00000374116.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	19	198	2	1.97732	2.07135	2.16538	0.00174922	8.63582e-4	0.0376398	0.0266494
chr11	125583774	125583865	4882589	0	+	0.516484	(0.515,0.57]	chr11	456410	2	UTR3	UTR3:EXON_MRNA	EI24	ENSG00000149547.15	ENST00000620753.4:ENST00000618552.4:ENST00000534546.5:ENST00000615917.4:ENST00000278903.11:ENST00000527235.6	protein_coding	protein_coding	protein_coding	protein_coding	3	29	2	1.79136	2.0713049999999997	2.35125	0.0638444	0.0436431	0.177811	0.162255
chr15	85094166	85094265	6090065	0	+	0.343434	(0.32,0.35]	chr15	579554	26	INTRON	INTRON	PDE8A	ENSG00000073417.15	ENST00000310298.8:ENST00000557957.5:ENST00000394553.6:ENST00000339708.9:ENST00000478717.5:ENST00000485596.5:ENST00000559742.5:ENST00000559086.5:ENST00000560789.5:ENST00000557819.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	121	2	1.6038	2.0713049999999997	2.53881	0.0141279	0.00317745	0.103419	0.0503705
chr16	11072120	11072220	6288846	0	+	0.55	(0.515,0.57]	chr16	602233	107	INTRON	INTRON	CLEC16A	ENSG00000038532.16	ENST00000409790.6:ENST00000409552.4:ENST00000465491.5:ENST00000646363.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	29	2	1.79136	2.0713049999999997	2.35125	0.0638444	0.0436431	0.177811	0.162255
chr2	235582824	235582924	1042225	0	+	0.53	(0.515,0.57]	chr2	111222	579	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1:ENST00000402604.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	29	2	1.79136	2.0713049999999997	2.35125	0.0638444	0.0436431	0.177811	0.162255
chr6	89083135	89083235	2916419	0	+	0.52	(0.515,0.57]	chr6	275587	4	SS5_PROX	SS5_PROX:INTRON	PNRC1	ENSG00000146278.11	ENST00000336032.4:ENST00000369472.1:ENST00000354922.3	protein_coding	protein_coding	protein_coding	protein_coding	3	29	2	1.79136	2.0713049999999997	2.35125	0.0638444	0.0436431	0.177811	0.162255
chr7	5418664	5418763	3472032	0	-	0.545455	(0.515,0.57]	chr7	324678	114	INTRON	INTRON	TNRC18	ENSG00000182095.15	ENST00000399537.8:ENST00000430969.6:ENST00000399434.2	protein_coding	protein_coding	protein_coding	protein_coding	3	29	2	1.79136	2.0713049999999997	2.35125	0.0638444	0.0436431	0.177811	0.162255
chr18	739378	739473	6939965	0	-	0.4	(0.378,0.408]	chr18	686468	15	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	YES1:ENSG00000264635	ENSG00000176105.14:ENSG00000264635.1	ENST00000584307.5:ENST00000314574.5:ENST00000577961.5:ENST00000581712.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	7	77	2	1.75204	2.07126	2.39048	0.0268575	0.00395852	0.123442	0.057511
chr1	90031567	90031666	161064	0	+	0.484848	(0.476,0.515]	chr1	17365	40	UTR3	UTR3:EXON_MRNA	ZNF326	ENSG00000162664.17	ENST00000340281.9:ENST00000370447.3	protein_coding	protein_coding	protein_coding	protein_coding	13	134	2	1.97067	2.07125	2.17183	0.00401605	0.00174985	0.0552299	0.0386524
chr6	4054743	4054841	2790044	0	+	0.408163	(0.378,0.408]	chr6	263541	15	INTRON	INTRON	PRPF4B	ENSG00000112739.17	ENST00000480058.5:ENST00000337659.11:ENST00000481109.5:ENST00000463634.6:ENST00000466185.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	88	2	1.85455	2.07124	2.28793	0.0192049	0.00291235	0.108861	0.0494641
chr3	10316979	10317074	1613279	0	-	0.357895	(0.35,0.378]	chr3	166611	12	INTRON	INTRON	SEC13	ENSG00000157020.18	ENST00000350697.8:ENST00000337354.8:ENST00000397109.7:ENST00000397117.5:ENST00000383801.6:ENST00000477547.6:ENST00000397105.7:ENST00000431352.1:ENST00000397102.5:ENST00000397101.5:ENST00000397099.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	11	126	2	1.95184	2.071165	2.19049	0.0052326	0.00365102	0.0656295	0.0535094
chr15	92921857	92921957	6103910	0	+	0.46	(0.44,0.476]	chr15	581408	4	SS5_PROX	SS5_PROX:INTRON	ENSG00000279765:CHD2	ENSG00000279765.3:ENSG00000173575.22	ENST00000629685.2:ENST00000630790.1:ENST00000626874.2:ENST00000394196.9:ENST00000635856.1:ENST00000420239.7:ENST00000628375.2:ENST00000625990.3:ENST00000626782.2:ENST00000629136.1:ENST00000636861.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	65	2	1.71574	2.071085	2.42643	0.045256	0.0033369	0.149888	0.0528877
chr16	71739741	71739841	6513748	0	-	0.34	(0.32,0.35]	chr16	631074	4	SS3_PROX	SS3_PROX:INTRON	AP1G1	ENSG00000166747.13	ENST00000299980.9:ENST00000569748.5:ENST00000564155.5:ENST00000393512.7:ENST00000565009.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	72	2	1.68188	2.071075	2.46027	0.031521	0.0108973	0.144381	0.0873034
chr17	27107011	27107111	6579895	0	+	0.39	(0.378,0.408]	chr17	639586	102	INTRON	INTRON	ENSG00000285822	ENSG00000285822.1	ENST00000649401.1	lncRNA	lncRNA	lncRNA	lncRNA	15	161	2	1.8871	2.070965	2.25483	0.00499613	7.76693e-4	0.0617433	0.0256531
chr12	4304759	4304858	5067726	0	+	0.333333	(0.32,0.35]	chr12	478308	49	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	CCND2	ENSG00000118971.9	ENST00000676411.1:ENST00000676279.1:ENST00000261254.8:ENST00000675880.1:ENST00000675468.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	121	2	1.55627	2.0709	2.58553	0.0170214	0.00263388	0.110899	0.045806
chr12	123606840	123606931	5243203	0	+	0.483516	(0.476,0.515]	chr12	498302	3	INTRON	INTRON	DDX55	ENSG00000111364.16	ENST00000542286.5:ENST00000544429.5:ENST00000238146.9:ENST00000545042.1:ENST00000544738.5:ENST00000538744.5:ENST00000540763.5:ENST00000354291.8:ENST00000536079.5:ENST00000539934.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	109	2	1.2727	2.07089	2.86908	0.0423046	4.03011e-4	0.148082	0.0180338
chr2	43959803	43959900	1110246	0	-	0.443299	(0.44,0.476]	chr2	119079	7	UTR3	UTR3:EXON_MRNA:INTRON	LRPPRC	ENSG00000138095.20	ENST00000260665.12:ENST00000682308.1:ENST00000683459.1:ENST00000683623.1:ENST00000683125.1:ENST00000683994.1:ENST00000684619.1:ENST00000683833.1:ENST00000682546.1:ENST00000682585.1:ENST00000683220.1:ENST00000683796.1:ENST00000683590.1:ENST00000684306.1:ENST00000683213.1:ENST00000682779.1:ENST00000682885.1:ENST00000684743.1:ENST00000683346.1:ENST00000683072.1:ENST00000682303.1:ENST00000683329.1:ENST00000684383.1:ENST00000682480.1:ENST00000684290.1:ENST00000684341.1:ENST00000682595.1:ENST00000683802.1:ENST00000681961.1:ENST00000683694.1:ENST00000683989.1:ENST00000447246.2:ENST00000409659.6:ENST00000682104.1:ENST00000683934.1:ENST00000681959.1:ENST00000684482.1:ENST00000683082.1:ENST00000467058.2:ENST00000409946.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	18	189	2	2.02923	2.07086	2.11249	0.0017848	0.00101865	0.0392749	0.029231300000000002
chr3	47702585	47702683	1684274	0	-	0.397959	(0.378,0.408]	chr3	172064	8	INTRON	INTRON	SMARCC1	ENSG00000173473.11	ENST00000254480.10:ENST00000425518.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	86	2	1.67662	2.070855	2.46509	0.0243251	0.00287152	0.12011	0.0494641
chrX	53665993	53666092	7821702	0	-	0.363636	(0.35,0.378]	chrX	798234	115	INTRON	INTRON	HUWE1	ENSG00000086758.16	ENST00000262854.11:ENST00000342160.7:ENST00000218328.12:ENST00000446750.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	75	2	1.47599	2.0708349999999998	2.66568	0.0425671	0.00496487	0.162011	0.0615009
chr8	97711978	97712077	3809745	0	+	0.282828	(0.28,0.32]	chr8	352878	49	INTRON	INTRON	MTDH	ENSG00000147649.10	ENST00000336273.8:ENST00000519934.5:ENST00000519293.1:ENST00000521933.1:ENST00000522104.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	55	2	1.76048	2.070745	2.38101	0.0456017	0.0450149	0.164236	0.149888
chr14	31020422	31020521	5857814	0	-	0.444444	(0.44,0.476]	chr14	556512	53	INTRON	INTRON	STRN3	ENSG00000196792.12	ENST00000355683.9:ENST00000357479.10:ENST00000555358.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	18	166	2	1.64107	2.070655	2.50024	0.00496603	7.41088e-4	0.0646039	0.0250148
chr15	58815635	58815726	6037184	0	+	0.362637	(0.35,0.378]	chr15	574924	5	EXON_LNCRNA	EXON_LNCRNA:INTRON	MINDY2:ENSG00000259402	ENSG00000128923.11:ENSG00000259402.1	ENST00000316848.9:ENST00000560289.5:ENST00000559228.6:ENST00000450403.3:ENST00000559745.2:ENST00000560378.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:nonsense_mediated_decay:lncRNA:processed_transcript	6	73	2	1.5118	2.07065	2.6295	0.0789277	0.00142732	0.198963	0.0347139
chr7	140457651	140457746	3661404	0	-	0.378947	(0.378,0.408]	chr7	339902	4	INTRON	INTRON	MKRN1	ENSG00000133606.11	ENST00000255977.7:ENST00000475010.5:ENST00000495305.5:ENST00000474576.5:ENST00000480552.5:ENST00000496169.5:ENST00000443720.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	109	2	1.7927	2.0706249999999997	2.34855	0.0163057	0.00119031	0.101571	0.0316639
chr19	1799254	1799353	7113313	0	-	0.484848	(0.476,0.515]	chr19	714742	6	UTR3	UTR3:EXON_MRNA:INTRON	ATP8B3	ENSG00000130270.16	ENST00000310127.10:ENST00000531925.5:ENST00000525591.5:ENST00000526092.6:ENST00000533107.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	17	150	2	1.28428	2.07055	2.85682	0.0278543	1.52104e-4	0.124128	0.0106137
chr19	4419373	4419473	7001931	0	+	0.36	(0.35,0.378]	chr19	694529	9	INTRON	INTRON	CHAF1A	ENSG00000167670.16	ENST00000301280.10:ENST00000587739.1:ENST00000585371.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	113	2	1.81613	2.070445	2.32476	0.00932362	0.00343673	0.085606	0.0517761
chr7	152435025	152435125	3681284	0	-	0.41	(0.408,0.44]	chr7	341660	760	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000682301.1:ENST00000452749.2:ENST00000680867.1:ENST00000683800.1:ENST00000684278.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	76	2	1.40374	2.07042	2.7371	0.0721345	7.83328e-4	0.187433	0.0257505
chr12	62386079	62386178	5150828	0	+	0.323232	(0.32,0.35]	chr12	487385	14	INTRON	INTRON	USP15	ENSG00000135655.16	ENST00000353364.7:ENST00000280377.10:ENST00000549268.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	52	2	1.88909	2.07041	2.25173	0.0553737	0.0180122	0.165463	0.114436
chr19	21455104	21455203	7158755	0	-	0.313131	(0.28,0.32]	chr19	723692	32	EXON_MRNA	EXON_MRNA:INTRON	ENSG00000268119	ENSG00000268119.7	ENST00000596705.5:ENST00000597444.6:ENST00000594557.1:ENST00000599993.7:ENST00000600469.7:ENST00000656526.1:ENST00000663704.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	10	132	2	2.06523	2.07037	2.07551	0.0112084	0.003536	0.0880475	0.0546236
chr3	143019268	143019368	1529258	0	+	0.28	[0,0.28]	chr3	159357	19	INTRON	INTRON	U2SURP	ENSG00000163714.18	ENST00000488497.7:ENST00000473835.7:ENST00000461591.5:ENST00000493598.6:ENST00000463563.6:ENST00000470400.5:ENST00000488587.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	14	180	2	1.59837	2.07037	2.54237	0.011501	0.00447054	0.0958425	0.0593175
chr19	1077356	1077421	6993750	0	+	0.446154	(0.44,0.476]	chr19	692779	1	SS3_PROX	SS3_PROX:INTRON	ARHGAP45	ENSG00000180448.11	ENST00000539243.6:ENST00000313093.7:ENST00000587602.5:ENST00000591293.2:ENST00000590214.5:ENST00000586866.5:ENST00000543365.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	85	2	1.72421	2.070245	2.41628	0.0285163	0.00156262	0.12666	0.0365263
chr6	105079376	105079475	2931076	0	+	0.373737	(0.35,0.378]	chr6	276121	7	UTR3	UTR3:EXON_MRNA	LIN28B	ENSG00000187772.8	ENST00000637759.1:ENST00000345080.5	protein_coding	protein_coding	protein_coding	protein_coding	6	69	2	1.4414	2.07022	2.69904	0.0629423	0.00438476	0.196658	0.0585064
chr9	128495261	128495354	4205316	0	+	0.397849	(0.378,0.408]	chr9	384530	2	INTRON	INTRON	ODF2	ENSG00000136811.17	ENST00000351030.8:ENST00000444119.7:ENST00000393527.8:ENST00000604420.5:ENST00000372807.10:ENST00000686232.1:ENST00000434106.7:ENST00000483070.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	88	2	1.82119	2.07018	2.31917	0.0214651	0.00252588	0.114274	0.0465056
chr12	96299643	96299723	5394265	0	-	0.475	(0.44,0.476]	chr12	514419	3	INTRON	INTRON	CDK17	ENSG00000059758.8	ENST00000261211.8:ENST00000543119.6:ENST00000542666.5:ENST00000553042.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	33	2	1.93084	2.0701650000000003	2.20949	0.0672585	0.0443175	0.183051	0.162302
chr15	83487860	83487960	6082385	0	+	0.46	(0.44,0.476]	chr15	579032	4	SS3_PROX	SS3_PROX:INTRON	SH3GL3	ENSG00000140600.17	ENST00000492099.1:ENST00000427482.7:ENST00000563901.5:ENST00000324537.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	33	2	1.93084	2.0701650000000003	2.20949	0.0672585	0.0443175	0.183051	0.162302
chr20	32430345	32430442	7256550	0	+	0.443299	(0.44,0.476]	chr20	737088	4	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	ASXL1	ENSG00000171456.21	ENST00000651418.1:ENST00000375687.10:ENST00000613218.4:ENST00000620121.4:ENST00000646985.1:ENST00000306058.9:ENST00000647223.1:ENST00000619344.4:ENST00000555564.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	33	2	1.93084	2.0701650000000003	2.20949	0.0672585	0.0443175	0.183051	0.162302
chr20	34414573	34414670	7259631	0	+	0.463918	(0.44,0.476]	chr20	737444	3	INTRON	INTRON	ITCH	ENSG00000078747.16	ENST00000374864.10:ENST00000535650.7:ENST00000670516.1:ENST00000658310.1:ENST00000665484.1:ENST00000664852.1:ENST00000660337.1:ENST00000665428.1:ENST00000262650.10:ENST00000662871.1:ENST00000665346.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	33	2	1.93084	2.0701650000000003	2.20949	0.0672585	0.0443175	0.183051	0.162302
chr4	169644367	169644467	2080116	0	+	0.47	(0.44,0.476]	chr4	205613	13	INTRON	INTRON	CLCN3	ENSG00000109572.15	ENST00000511092.5:ENST00000347613.8:ENST00000360642.7:ENST00000512813.5:ENST00000513761.6	protein_coding	protein_coding	protein_coding	protein_coding	3	33	2	1.93084	2.0701650000000003	2.20949	0.0672585	0.0443175	0.183051	0.162302
chr6	35877035	35877135	3088376	0	-	0.45	(0.44,0.476]	chr6	288860	23	INTRON	INTRON	SRPK1	ENSG00000096063.16	ENST00000373825.7:ENST00000423325.6:ENST00000346162.10:ENST00000361690.7:ENST00000510290.5:ENST00000373821.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	33	2	1.93084	2.0701650000000003	2.20949	0.0672585	0.0443175	0.183051	0.162302
chr1	40386866	40386966	81575	0	+	0.53	(0.515,0.57]	chr1	10553	118	INTRON	INTRON	SMAP2	ENSG00000084070.12	ENST00000435168.6:ENST00000372718.8:ENST00000372708.5	protein_coding	protein_coding	protein_coding	protein_coding	15	124	2	1.70083	2.07005	2.43927	0.00520656	7.64103e-4	0.0655877	0.0253443
chr12	56672541	56672639	5335920	0	-	0.326531	(0.32,0.35]	chr12	510182	3	SS5_PROX	SS5_PROX:INTRON	PTGES3	ENSG00000110958.16	ENST00000537473.2:ENST00000614328.4:ENST00000262033.11:ENST00000414274.7:ENST00000436399.6:ENST00000448157.6:ENST00000456859.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	47	2	1.83315	2.06994	2.30673	0.0584434	0.0313348	0.167723	0.144381
chr1	31043934	31044034	412678	0	-	0.3	(0.28,0.32]	chr1	49733	147	INTRON	INTRON	PUM1	ENSG00000134644.16	ENST00000426105.7:ENST00000373747.7:ENST00000257075.9:ENST00000424085.6:ENST00000525843.5:ENST00000440538.6:ENST00000373741.8:ENST00000373742.6:ENST00000526215.5:ENST00000525948.5:ENST00000480602.1:ENST00000524516.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	59	2	1.68411	2.0697799999999997	2.45545	0.0438092	0.0323543	0.14901	0.145026
chr4	109728902	109729001	2225445	0	-	0.333333	(0.32,0.35]	chr4	217900	98	INTRON	INTRON	PLA2G12A	ENSG00000123739.11	ENST00000243501.10:ENST00000502283.1:ENST00000507961.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	53	2	1.45026	2.069735	2.68921	0.0622478	0.0230336	0.194723	0.118056
chr1	46312495	46312593	96628	0	+	0.469388	(0.44,0.476]	chr1	12977	18	INTRON	INTRON	UQCRH	ENSG00000173660.12	ENST00000311672.10:ENST00000489056.5:ENST00000496387.5:ENST00000460947.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	94	2	1.93713	2.069695	2.20226	0.0138947	0.00238044	0.0955491	0.0449397
chr19	15293047	15293147	7147011	0	-	0.39	(0.378,0.408]	chr19	721965	127	INTRON	INTRON	BRD4	ENSG00000141867.19	ENST00000679869.1:ENST00000360016.9:ENST00000594841.5:ENST00000597315.5:ENST00000601941.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	108	2	1.395	2.06967	2.74434	0.0467334	2.94671e-4	0.151763	0.0153497
chr16	72520217	72520315	6517860	0	-	0.489796	(0.476,0.515]	chr16	631338	13	INTRON	INTRON	LINC01572	ENSG00000261008.8	ENST00000624829.4:ENST00000561611.2:ENST00000656218.1:ENST00000666555.2:ENST00000664155.1:ENST00000657725.1:ENST00000563770.5:ENST00000668081.1:ENST00000570152.2	lncRNA	lncRNA	lncRNA	lncRNA	8	82	2	1.44826	2.06965	2.69104	0.0482164	9.94264e-4	0.153146	0.0290397
chr7	17911633	17911733	3496278	0	-	0.23	[0,0.28]	chr7	326520	39	INTRON	INTRON	SNX13	ENSG00000071189.21	ENST00000428135.7:ENST00000611725.4:ENST00000409076.6:ENST00000444712.5:ENST00000482558.5:ENST00000409604.1:ENST00000475800.5:ENST00000474067.5:ENST00000471744.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	121	2	1.86436	2.0696000000000003	2.27484	0.0134322	0.0111236	0.101281	0.0877424
chr16	23895951	23896051	6324360	0	+	0.26	[0,0.28]	chr16	605701	22	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000498739.1	protein_coding	protein_coding	protein_coding	protein_coding	12	176	2	1.22054	2.0696	2.91866	0.0712307	2.31603e-4	0.185599	0.013445
chr1	156731109	156731204	231692	0	+	0.473684	(0.44,0.476]	chr1	27436	12	INTRON	INTRON	METTL25B	ENSG00000143303.12	ENST00000368218.8:ENST00000368216.9:ENST00000519086.5:ENST00000524343.1:ENST00000484742.5	protein_coding	protein_coding	protein_coding	protein_coding	7	74	2	1.88483	2.069565	2.2543	0.0149825	0.00787184	0.107704	0.076155
chr1	23061346	23061444	44188	0	+	0.346939	(0.32,0.35]	chr1	5295	18	INTRON	INTRON	KDM1A	ENSG00000004487.18	ENST00000692214.1:ENST00000686934.1:ENST00000689853.1:ENST00000465864.2:ENST00000691256.1:ENST00000688122.1:ENST00000692056.1:ENST00000692853.1:ENST00000689366.1:ENST00000686270.1:ENST00000685102.1:ENST00000690627.1:ENST00000686771.1:ENST00000692209.1:ENST00000686339.1:ENST00000691813.1:ENST00000693156.1:ENST00000688235.1:ENST00000692975.1:ENST00000687202.1:ENST00000691682.1:ENST00000691404.1:ENST00000691694.1:ENST00000688680.1:ENST00000356634.7:ENST00000400181.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	52	2	1.83416	2.06946	2.30476	0.0631198	0.0151817	0.176946	0.108535
chr1	168053330	168053430	249677	0	+	0.34	(0.32,0.35]	chr1	29648	20	INTRON	INTRON	DCAF6	ENSG00000143164.16	ENST00000432587.6:ENST00000367843.7:ENST00000367840.4:ENST00000312263.10:ENST00000489398.1:ENST00000478668.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	52	2	1.83416	2.06946	2.30476	0.0631198	0.0151817	0.176946	0.108535
chr16	71908248	71908347	6386734	0	+	0.343434	(0.32,0.35]	chr16	614084	42	INTRON	INTRON	IST1	ENSG00000182149.21	ENST00000568581.5:ENST00000540296.5:ENST00000544564.5:ENST00000541571.6:ENST00000538104.5:ENST00000535424.5:ENST00000606369.5:ENST00000537613.5:ENST00000424485.6:ENST00000566536.5:ENST00000378799.11:ENST00000538565.5:ENST00000329908.12:ENST00000538850.5:ENST00000541918.5:ENST00000378798.9:ENST00000534994.5:ENST00000539186.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	52	2	1.83416	2.06946	2.30476	0.0631198	0.0151817	0.176946	0.108535
chr2	172585477	172585577	920201	0	+	0.46	(0.44,0.476]	chr2	101374	143	INTRON	INTRON	PDK1	ENSG00000152256.14	ENST00000392571.6:ENST00000410055.5:ENST00000282077.8:ENST00000466437.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	13	134	2	1.90372	2.06946	2.2352	0.0103521	5.86635e-4	0.085045	0.0220073
chr1	8646474	8646574	372068	0	-	0.43	(0.408,0.44]	chr1	43533	217	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000400907.6:ENST00000656437.1:ENST00000659924.1:ENST00000480342.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	45	2	2.05947	2.06933	2.07919	0.0333232	0.0291499	0.14147	0.134145
chr1	28512373	28512471	57239	0	+	0.418367	(0.408,0.44]	chr1	7392	16	INTRON	INTRON	RCC1	ENSG00000180198.17	ENST00000398958.6:ENST00000649185.1:ENST00000427469.5:ENST00000683442.1:ENST00000434290.6:ENST00000373833.10:ENST00000419074.5	protein_coding	protein_coding	protein_coding	protein_coding	4	43	2	1.74108	2.06929	2.3975	0.0424099	0.040266	0.161534	0.148082
chr3	37079276	37079375	1655643	0	-	0.454545	(0.44,0.476]	chr3	169908	38	INTRON	INTRON	LRRFIP2	ENSG00000093167.18	ENST00000336686.9:ENST00000354379.8:ENST00000421276.6:ENST00000396428.6:ENST00000440230.5:ENST00000440742.2:ENST00000416425.5	protein_coding	protein_coding	protein_coding	protein_coding	4	40	2	1.75627	2.06923	2.38219	0.045456	0.0380723	0.157702	0.149888
chr7	10616852	10616952	3482948	0	-	0.46	(0.44,0.476]	chr7	325772	549	INTRON	INTRON	MGC4859	ENSG00000283117.1	ENST00000634803.1	lncRNA	lncRNA	lncRNA	lncRNA	4	40	2	1.75627	2.06923	2.38219	0.045456	0.0380723	0.157702	0.149888
chr4	103126555	103126654	2214847	0	-	0.363636	(0.35,0.378]	chr4	216987	31	INTRON	INTRON	CENPE	ENSG00000138778.14	ENST00000380026.8:ENST00000265148.9	protein_coding	protein_coding	protein_coding	protein_coding	4	45	2	1.97646	2.06908	2.1617	0.0771502	0.0193942	0.196285	0.119831
chr7	131103170	131103270	3642631	0	-	0.47	(0.44,0.476]	chr7	338763	148	INTRON	INTRON	LINC-PINT	ENSG00000231721.7	ENST00000647388.1:ENST00000423414.5:ENST00000433079.5:ENST00000642156.1:ENST00000646429.1:ENST00000451786.5:ENST00000645248.1:ENST00000642602.1:ENST00000644804.1:ENST00000647288.1:ENST00000643135.1:ENST00000643855.1:ENST00000643874.1:ENST00000644188.1:ENST00000431189.1:ENST00000642483.1:ENST00000429901.2	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	5	46	2	1.60176	2.06908	2.5364	0.0389597	0.0309324	0.160861	0.13151
chr2	47784387	47784487	777050	0	+	0.45	(0.44,0.476]	chr2	87409	1	SS3_ADJ	SS3_ADJ:SS3_PROX:SS5_PROX:INTRON	MSH6	ENSG00000116062.18	ENST00000652107.1:ENST00000445503.5:ENST00000614496.4:ENST00000456246.1:ENST00000234420.11:ENST00000673922.1:ENST00000673637.1:ENST00000493177.1:ENST00000540021.6:ENST00000455383.5:ENST00000538136.1:ENST00000420813.5:ENST00000411819.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	11	104	2	1.4337	2.068955	2.70421	0.0282202	9.23275e-4	0.125657	0.0278392
chr11	3368405	3368502	4893741	0	-	0.43299	(0.408,0.44]	chr11	458673	15	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	ZNF195	ENSG00000005801.18	ENST00000528796.5:ENST00000399602.9:ENST00000354599.10:ENST00000343338.11:ENST00000620374.4:ENST00000649622.1:ENST00000429541.6:ENST00000005082.13:ENST00000526601.5:ENST00000438262.6:ENST00000528410.5:ENST00000528218.5:ENST00000529789.5:ENST00000525313.6:ENST00000533036.5:ENST00000529228.5:ENST00000529678.5:ENST00000427810.6:ENST00000534569.5:ENST00000524857.5:ENST00000530643.5:ENST00000618467.4:ENST00000330692.11:ENST00000525502.5:ENST00000526501.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	77	2	1.6546400000000001	2.06895	2.48326	0.0329965	0.00324772	0.145298	0.0508595
chr12	110400437	110400536	5409166	0	-	0.393939	(0.378,0.408]	chr12	516463	36	INTRON	INTRON	ANAPC7:ENSG00000258210	ENSG00000196510.14:ENSG00000258210.1	ENST00000455511.9:ENST00000450008.3:ENST00000552170.2:ENST00000550231.1:ENST00000464697.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay	8	88	2	1.54765	2.06895	2.59025	0.0334147	0.00217503	0.146709	0.0417893
chr6	26882160	26882257	3071521	0	-	0.474227	(0.44,0.476]	chr6	285526	30	INTRON	INTRON	GUSBP2	ENSG00000241549.8	ENST00000479900.5:ENST00000463434.5:ENST00000492832.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	4	41	2	1.92837	2.06893	2.20949	0.0672585	0.0222222	0.183051	0.124303
chr1	86918997	86919097	153636	0	+	0.61	(0.57,1]	chr1	16952	28	INTRON	INTRON	HS2ST1	ENSG00000153936.18	ENST00000370550.10:ENST00000370551.8:ENST00000687893.1:ENST00000693745.1:ENST00000689904.1:ENST00000690674.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	18	2	1.77365	2.06888	2.36411	0.0670385	0.0408868	0.183051	0.161534
chr16	95783	95881	6425326	0	-	0.591837	(0.57,1]	chr16	617328	21	INTRON	INTRON	NPRL3	ENSG00000103148.17	ENST00000611875.5:ENST00000622194.4:ENST00000621703.4:ENST00000399953.7:ENST00000464069.1:ENST00000473674.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	18	2	1.77365	2.06888	2.36411	0.0670385	0.0408868	0.183051	0.161534
chr17	75205894	75205994	6674257	0	+	0.63	(0.57,1]	chr17	651336	1	SS5_PROX	SS5_PROX:INTRON	NUP85	ENSG00000125450.11	ENST00000583569.5:ENST00000245544.9:ENST00000583948.5:ENST00000579324.5:ENST00000582833.5:ENST00000449421.6:ENST00000581104.5:ENST00000579298.5:ENST00000583548.1:ENST00000577208.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	18	2	1.77365	2.06888	2.36411	0.0670385	0.0408868	0.183051	0.161534
chr19	1651999	1652099	7113113	0	-	0.8	(0.57,1]	chr19	714668	3	SS5_PROX	SS5_PROX:INTRON	TCF3	ENSG00000071564.17	ENST00000344749.9:ENST00000262965.12:ENST00000588136.7:ENST00000453954.6:ENST00000395423.7	protein_coding	protein_coding	protein_coding	protein_coding	3	18	2	1.77365	2.06888	2.36411	0.0670385	0.0408868	0.183051	0.161534
chr3	14471804	14471904	1370103	0	+	0.59	(0.57,1]	chr3	144372	2	SS3_PROX	SS3_PROX:INTRON	SLC6A6	ENSG00000131389.18	ENST00000613060.4:ENST00000618278.4:ENST00000610642.4:ENST00000649500.1:ENST00000622186.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	18	2	1.77365	2.06888	2.36411	0.0670385	0.0408868	0.183051	0.161534
chr3	195952402	195952500	1896626	0	-	0.612245	(0.57,1]	chr3	189779	34	EXON_LNCRNA	EXON_LNCRNA:INTRON	ENSG00000260261	ENSG00000260261.2	ENST00000607976.2:ENST00000641484.1:ENST00000570130.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	3	18	2	1.77365	2.06888	2.36411	0.0670385	0.0408868	0.183051	0.161534
chr6	135182234	135182333	2962153	0	+	0.59596	(0.57,1]	chr6	278557	3	INTRON	INTRON	MYB	ENSG00000118513.20	ENST00000341911.10:ENST00000442647.7:ENST00000316528.12:ENST00000616088.4:ENST00000339290.9:ENST00000367812.6:ENST00000463282.6:ENST00000525477.5:ENST00000533837.5:ENST00000367814.8:ENST00000527615.5:ENST00000420123.6:ENST00000525369.5:ENST00000438901.6:ENST00000525514.5:ENST00000526320.5:ENST00000526889.5:ENST00000529586.5:ENST00000531519.5:ENST00000533808.5:ENST00000528343.5:ENST00000524588.5:ENST00000525002.5:ENST00000525940.5:ENST00000526187.5:ENST00000526565.5:ENST00000528015.5:ENST00000528140.5:ENST00000528345.5:ENST00000528774.5:ENST00000529262.5:ENST00000531634.5:ENST00000531737.5:ENST00000533384.5:ENST00000533624.5:ENST00000534044.5:ENST00000534121.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	18	2	1.77365	2.06888	2.36411	0.0670385	0.0408868	0.183051	0.161534
chr19	57293294	57293391	7103660	0	+	0.360825	(0.35,0.378]	chr19	712862	12	UTR3	UTR3:EXON_MRNA	ZNF460	ENSG00000197714.9	ENST00000360338.4	protein_coding	protein_coding	protein_coding	protein_coding	6	57	2	1.59904	2.0688	2.53856	0.0326077	0.0285976	0.139244	0.133687
chr17	47683857	47683954	6622952	0	+	0.340206	(0.32,0.35]	chr17	646121	16	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	KPNB1	ENSG00000108424.11	ENST00000583648.6:ENST00000290158.9:ENST00000582126.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	65	2	1.99785	2.06865	2.13945	0.0254517	0.0215554	0.133676	0.114686
chr3	149051644	149051744	1840640	0	-	0.51	(0.476,0.515]	chr3	185126	2	SS5_PROX	SS5_PROX:INTRON	HLTF	ENSG00000071794.16	ENST00000310053.10:ENST00000465259.5:ENST00000392912.6:ENST00000494055.5:ENST00000493881.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	64	2	1.88582	2.0686	2.25138	0.0273268	0.00692374	0.123904	0.0753208
chr7	4769446	4769546	3270797	0	+	0.55	(0.515,0.57]	chr7	303926	71	UTR3	UTR3:EXON_MRNA	FOXK1	ENSG00000164916.11	ENST00000328914.5	protein_coding	protein_coding	protein_coding	protein_coding	11	101	2	1.9021	2.068555	2.23501	0.00848696	0.00132333	0.083161	0.03326
chr15	32631418	32631514	5995640	0	+	0.510417	(0.476,0.515]	chr15	569996	13	INTRON	INTRON	ARHGAP11A	ENSG00000198826.11	ENST00000565905.5:ENST00000361627.8:ENST00000567348.5:ENST00000563864.5:ENST00000543522.5:ENST00000562481.1	protein_coding	protein_coding	protein_coding	protein_coding	6	64	2	1.97402	2.06854	2.16306	0.0206778	0.00973468	0.110999	0.0877284
chr4	126584002	126584102	2236549	0	-	0.3	(0.28,0.32]	chr4	219023	1185	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	9	117	2	2.06157	2.06854	2.07551	0.0189458	0.003536	0.108861	0.0546236
chr16	89800332	89800429	6544654	0	-	0.43299	(0.408,0.44]	chr16	634579	3	INTRON	INTRON	FANCA	ENSG00000187741.16	ENST00000561667.2:ENST00000389301.8:ENST00000568369.6:ENST00000564475.6:ENST00000696275.1:ENST00000696287.1:ENST00000696286.1:ENST00000696274.1:ENST00000696291.1:ENST00000696276.1:ENST00000567205.2:ENST00000567284.7:ENST00000696277.1:ENST00000696292.1:ENST00000563767.2:ENST00000567621.6:ENST00000696288.1:ENST00000696293.1:ENST00000566889.5:ENST00000389302.7:ENST00000696294.1:ENST00000696295.1:ENST00000563673.5:ENST00000543736.5:ENST00000534992.5:ENST00000565582.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	120	2	1.67948	2.0684	2.45732	0.0154364	9.43743e-4	0.108739	0.028105
chr11	14646552	14646652	4743644	0	+	0.29	(0.28,0.32]	chr11	439279	11	INTRON	INTRON	PDE3B	ENSG00000152270.9	ENST00000282096.9:ENST00000455098.2:ENST00000534317.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	91	2	2.05458	2.0683949999999998	2.08221	0.0381508	0.00506211	0.141764	0.0646039
chr9	94442981	94443080	4162852	0	+	0.393939	(0.378,0.408]	chr9	379509	15	INTRON	INTRON	MFSD14B	ENSG00000148110.17	ENST00000375344.8	protein_coding	protein_coding	protein_coding	protein_coding	6	67	2	1.86598	2.06839	2.2708	0.0300232	0.00646593	0.129138	0.073179
chr11	66620645	66620745	4810839	0	+	0.37	(0.35,0.378]	chr11	447856	4	SS3_PROX	SS3_PROX:INTRON	RBM14-RBM4:RBM14	ENSG00000248643.5:ENSG00000239306.5	ENST00000412278.2:ENST00000393979.3:ENST00000511114.1:ENST00000310137.5:ENST00000409372.1:ENST00000421355.1:ENST00000443702.1:ENST00000500635.2:ENST00000409738.4:ENST00000461478.1:ENST00000496694.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	71	2	2.06612	2.068305	2.07049	0.0164908	0.0140397	0.102801	0.102419
chr17	40302197	40302296	6610284	0	+	0.414141	(0.408,0.44]	chr17	643837	3	UTR3	UTR3:EXON_MRNA	CDC6	ENSG00000094804.12	ENST00000209728.9:ENST00000649662.1	protein_coding	protein_coding	protein_coding	protein_coding	5	46	2	1.55035	2.068295	2.58624	0.0455214	0.0273686	0.164236	0.123904
chr3	47144145	47144245	1681406	0	-	0.43	(0.408,0.44]	chr3	171624	171	INTRON	INTRON	SETD2	ENSG00000181555.22	ENST00000691544.1:ENST00000638947.2:ENST00000409792.4:ENST00000412450.1	protein_coding	protein_coding	protein_coding	protein_coding	5	46	2	1.55035	2.068295	2.58624	0.0455214	0.0273686	0.164236	0.123904
chr10	5811473	5811573	4544900	0	-	0.44	(0.408,0.44]	chr10	419802	2	SS5_PROX	SS5_PROX:INTRON	GDI2	ENSG00000057608.17	ENST00000380191.9:ENST00000380181.7:ENST00000456041.5:ENST00000418688.5:ENST00000608581.5:ENST00000380127.5:ENST00000609712.1	protein_coding	protein_coding	protein_coding	protein_coding	6	62	2	1.60344	2.068285	2.53313	0.0387506	0.00739595	0.160156	0.074277
chr13	19705068	19705161	5552159	0	-	0.311828	(0.28,0.32]	chr13	530684	14	INTRON	INTRON	PSPC1	ENSG00000121390.19	ENST00000471658.5:ENST00000492741.5:ENST00000635562.1:ENST00000338910.9:ENST00000619300.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	70	2	1.81582	2.0681700000000003	2.32052	0.068122	0.00612675	0.184298	0.0708525
chr5	159202834	159202933	2759121	0	-	0.282828	(0.28,0.32]	chr5	260362	77	INTRON	INTRON	RNF145	ENSG00000145860.12	ENST00000424310.7:ENST00000519865.5:ENST00000274542.6:ENST00000611185.4:ENST00000521606.6:ENST00000518802.5:ENST00000520638.1:ENST00000520548.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	70	2	1.81582	2.0681700000000003	2.32052	0.068122	0.00612675	0.184298	0.0708525
chr18	36167622	36167722	6891828	0	+	0.36	(0.35,0.378]	chr18	683074	4	SS5_PROX	SS5_PROX:INTRON	ELP2	ENSG00000134759.14	ENST00000351393.10:ENST00000442325.6:ENST00000358232.11:ENST00000423854.6:ENST00000539560.5:ENST00000350494.10:ENST00000542824.5:ENST00000540766.5:ENST00000545302.5:ENST00000541748.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	34	325	2	1.63604	2.068145	2.50025	0.00219718	2.79979e-4	0.0435144	0.0153879
chr9	128953827	128953923	4207911	0	+	0.489583	(0.476,0.515]	chr9	385258	6	INTRON	INTRON	NUP188	ENSG00000095319.14	ENST00000372577.2:ENST00000491990.5:ENST00000550219.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	74	2	1.36472	2.068115	2.77151	0.0467985	0.00288481	0.167716	0.0475859
chrX	153948550	153948649	7911936	0	-	0.363636	(0.35,0.378]	chrX	805405	11	UTR3	UTR3:EXON_MRNA	HCFC1	ENSG00000172534.14	ENST00000310441.12:ENST00000444191.5:ENST00000369984.4	protein_coding	protein_coding	protein_coding	protein_coding	11	126	2	1.9257	2.06808	2.21046	0.00586705	0.00335487	0.0690758	0.0514696
chr1	6187216	6187316	366074	0	-	0.5	(0.476,0.515]	chr1	43017	4	SS3_PROX	SS3_PROX:INTRON	RPL22	ENSG00000116251.11	ENST00000234875.9:ENST00000480661.1:ENST00000497965.5:ENST00000471204.5:ENST00000465387.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	11	107	2	1.68497	2.06802	2.45107	0.0107474	0.00301722	0.0866159	0.0507519
chr17	27311616	27311716	6580720	0	+	0.34	(0.32,0.35]	chr17	639644	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	WSB1	ENSG00000109046.15	ENST00000467843.6:ENST00000262394.7:ENST00000348811.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	26	279	2	1.97306	2.067985	2.16291	0.00452463	4.92075e-4	0.0595107	0.0200814
chr7	127711912	127712012	3403006	0	+	0.35	(0.32,0.35]	chr7	318124	39	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8	protein_coding	protein_coding	protein_coding	protein_coding	6	72	2	1.42542	2.0679749999999997	2.71053	0.0718205	0.00346747	0.187046	0.0539802
chr16	81522887	81522987	6405780	0	+	0.34	(0.32,0.35]	chr16	615031	270	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6	protein_coding	protein_coding	protein_coding	protein_coding	8	97	2	1.72098	2.0679499999999997	2.41492	0.0192903	0.00513727	0.119831	0.062965
chr18	9589450	9589548	6946062	0	-	0.316327	(0.28,0.32]	chr18	687020	2	INTRON	INTRON	PPP4R1	ENSG00000154845.16	ENST00000400555.7:ENST00000400556.8:ENST00000285124.12:ENST00000580583.5:ENST00000578875.5:ENST00000578178.5:ENST00000583903.5:ENST00000579638.5:ENST00000584074.5:ENST00000579415.5:ENST00000581250.5:ENST00000580745.5:ENST00000582933.5:ENST00000580182.5:ENST00000582240.5:ENST00000581835.1:ENST00000583092.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	52	2	1.94591	2.06783	2.18975	0.0776042	0.0228482	0.196285	0.125519
chr2	216120563	216120662	1014459	0	+	0.313131	(0.28,0.32]	chr2	107958	10	INTRON	INTRON	XRCC5	ENSG00000079246.16	ENST00000392133.7:ENST00000392132.7:ENST00000460284.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	52	2	1.94591	2.06783	2.18975	0.0776042	0.0228482	0.196285	0.125519
chr11	86008865	86008963	5014229	0	-	0.418367	(0.408,0.44]	chr11	472976	9	INTRON	INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000630913.2:ENST00000528398.5:ENST00000356360.9:ENST00000534412.5:ENST00000531771.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	101	2	2.04611	2.06782	2.08953	0.016628	0.00179089	0.102621	0.0392762
chr2	144500762	144500862	1241615	0	-	0.4	(0.378,0.408]	chr2	131741	26	INTRON	INTRON	ZEB2	ENSG00000169554.23	ENST00000636471.1:ENST00000627532.3:ENST00000638128.1:ENST00000637304.1:ENST00000636179.1:ENST00000419938.5:ENST00000409487.7:ENST00000636732.2:ENST00000636026.2:ENST00000675069.1:ENST00000689298.1:ENST00000539609.7:ENST00000558170.6:ENST00000303660.8:ENST00000427902.5:ENST00000637267.2:ENST00000392861.6:ENST00000431672.4:ENST00000409211.5:ENST00000465308.5:ENST00000434448.5:ENST00000472146.5:ENST00000461784.3:ENST00000476394.5:ENST00000637591.2:ENST00000479735.1:ENST00000453352.5:ENST00000435831.5:ENST00000444559.5:ENST00000630572.2:ENST00000484313.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	107	2	1.51972	2.0678099999999997	2.6159	0.0183288	0.00194844	0.115887	0.0400465
chr14	102610818	102610918	5822715	0	+	0.43	(0.408,0.44]	chr14	552490	171	INTRON	INTRON	RCOR1	ENSG00000089902.10	ENST00000262241.7	protein_coding	protein_coding	protein_coding	protein_coding	4	40	2	1.69566	2.06777	2.43988	0.0453922	0.0398236	0.164236	0.143072
chr2	68179143	68179238	1145783	0	-	0.431579	(0.408,0.44]	chr2	122367	4	UTR3	UTR3:EXON_MRNA	PPP3R1	ENSG00000221823.11	ENST00000234310.8	protein_coding	protein_coding	protein_coding	protein_coding	4	40	2	1.69566	2.06777	2.43988	0.0453922	0.0398236	0.164236	0.143072
chr7	139094550	139094650	3656269	0	-	0.41	(0.408,0.44]	chr7	339450	44	INTRON	INTRON	ZC3HAV1	ENSG00000105939.14	ENST00000242351.10:ENST00000464606.5:ENST00000680309.1:ENST00000471652.1	protein_coding	protein_coding	protein_coding	protein_coding	4	40	2	1.69566	2.06777	2.43988	0.0453922	0.0398236	0.164236	0.143072
chr21	38021116	38021216	7463092	0	-	0.49	(0.476,0.515]	chr21	760277	106	INTRON	INTRON	DSCR4	ENSG00000184029.9	ENST00000398948.5	lncRNA	lncRNA	lncRNA	lncRNA	6	61	2	1.50151	2.067735	2.63396	0.054954	0.00426634	0.165463	0.0596808
chr4	103165750	103165849	2215270	0	-	0.444444	(0.44,0.476]	chr4	217118	18	INTRON	INTRON	CENPE	ENSG00000138778.14	ENST00000380026.8:ENST00000265148.9	protein_coding	protein_coding	protein_coding	protein_coding	6	61	2	1.75023	2.06771	2.38519	0.0240995	0.012193	0.129929	0.0910127
chr12	122491739	122491832	5441899	0	-	0.516129	(0.515,0.57]	chr12	520509	3	INTRON	INTRON	ZCCHC8	ENSG00000033030.15	ENST00000672018.1:ENST00000633063.3:ENST00000543897.5:ENST00000536306.5:ENST00000536663.5:ENST00000540586.1	protein_coding	protein_coding	protein_coding	protein_coding	8	72	2	1.82142	2.06768	2.31394	0.0191173	0.00231716	0.108861	0.0442594
chr4	126624588	126624688	2236955	0	-	0.47	(0.44,0.476]	chr4	219023	1591	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	11	105	2	1.88098	2.06764	2.2543	0.00787184	0.00373563	0.076155	0.0562234
chr4	78789301	78789401	1981514	0	+	0.31	(0.28,0.32]	chr4	198463	122	INTRON	INTRON	BMP2K	ENSG00000138756.19	ENST00000389010.7:ENST00000502613.3:ENST00000502871.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	15	201	2	1.72383	2.06757	2.41131	0.0152533	3.42226e-4	0.0997777	0.0164987
chr1	51456935	51457035	453723	0	-	0.45	(0.44,0.476]	chr1	54395	84	INTRON	INTRON	EPS15	ENSG00000085832.17	ENST00000371733.8:ENST00000371730.6	protein_coding	protein_coding	protein_coding	protein_coding	5	55	2	1.98938	2.067555	2.14573	0.0238593	0.0198602	0.129075	0.109608
chr6	33311132	33311231	3082789	0	-	0.464646	(0.44,0.476]	chr6	288387	26	INTRON	INTRON	TAPBP	ENSG00000231925.13	ENST00000434618.7:ENST00000475304.5:ENST00000489157.5:ENST00000426633.6:ENST00000480730.5:ENST00000437116.2:ENST00000467025.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	55	2	1.98938	2.067555	2.14573	0.0238593	0.0198602	0.129075	0.109608
chr3	48712845	48712943	1689660	0	-	0.510204	(0.476,0.515]	chr3	172866	10	INTRON	INTRON	IP6K2	ENSG00000068745.15	ENST00000328631.10:ENST00000449563.5:ENST00000413654.5:ENST00000443853.5:ENST00000437427.5:ENST00000412850.5:ENST00000454335.5:ENST00000340879.8:ENST00000432678.6:ENST00000433104.2:ENST00000416707.1:ENST00000431721.6:ENST00000449610.5:ENST00000413298.5:ENST00000450045.5:ENST00000446860.5:ENST00000455545.5:ENST00000412795.5:ENST00000417896.1:ENST00000443964.1:ENST00000436134.5:ENST00000440424.5:ENST00000434860.1:ENST00000424035.1:ENST00000476645.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	45	2	1.91817	2.06747	2.21677	0.0459211	0.0207026	0.164984	0.110999
chr7	101929855	101929954	3367491	0	+	0.50505	(0.476,0.515]	chr7	315225	133	INTRON	INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000497815.5:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000558469.5:ENST00000560541.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	45	2	1.91817	2.06747	2.21677	0.0459211	0.0207026	0.164984	0.110999
chr1	155908367	155908466	564588	0	-	0.565657	(0.515,0.57]	chr1	67418	32	INTRON	INTRON	RIT1	ENSG00000143622.11	ENST00000368323.8:ENST00000651853.1:ENST00000539040.5:ENST00000368322.7:ENST00000461050.5:ENST00000609492.1:ENST00000651833.1:ENST00000650659.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	82	2	1.69631	2.067455	2.4386	0.0103622	0.00326739	0.0897374	0.0508595
chr12	110383362	110383460	5408987	0	-	0.520408	(0.515,0.57]	chr12	516432	2	SS3_PROX	SS3_PROX:INTRON	ANAPC7	ENSG00000196510.14	ENST00000455511.9:ENST00000450008.3:ENST00000548234.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	58	2	1.59629	2.06737	2.53845	0.0274344	0.00632226	0.136554	0.0687526
chr11	108213256	108213355	5035094	0	-	0.343434	(0.32,0.35]	chr11	474469	43	INTRON	INTRON	NPAT	ENSG00000149308.17	ENST00000278612.9:ENST00000610253.5:ENST00000531384.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	60	2	1.50258	2.0673399999999997	2.6321	0.0399817	0.0268	0.161534	0.123349
chr9	130737254	130737354	4214097	0	+	0.39	(0.378,0.408]	chr9	386427	224	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000393293.4	protein_coding	protein_coding	protein_coding	protein_coding	10	110	2	2.01851	2.067295	2.11608	0.00559022	0.00467795	0.0678837	0.0600108
chr6	13660330	13660430	3058710	0	-	0.5	(0.476,0.515]	chr6	284542	11	INTRON	INTRON	RANBP9	ENSG00000010017.13	ENST00000011619.6	protein_coding	protein_coding	protein_coding	protein_coding	8	83	2	1.97402	2.067285	2.16055	0.0206778	0.00292015	0.110999	0.0494641
chr2	241320487	241320587	1053654	0	+	0.55	(0.515,0.57]	chr2	112201	2	SS5_PROX	SS5_PROX:INTRON	SEPTIN2	ENSG00000168385.18	ENST00000391973.6:ENST00000428282.5:ENST00000492978.5:ENST00000360051.7:ENST00000407017.5:ENST00000445030.5:ENST00000428524.5:ENST00000469434.5:ENST00000616972.4:ENST00000495463.5:ENST00000482304.5:ENST00000475474.5:ENST00000401990.5:ENST00000469175.5:ENST00000407971.5:ENST00000461048.5:ENST00000457335.5:ENST00000436795.5:ENST00000494824.5:ENST00000411484.5:ENST00000462147.5:ENST00000434955.5:ENST00000466211.5:ENST00000391971.7:ENST00000402092.6:ENST00000484740.1:ENST00000473479.5:ENST00000464128.5:ENST00000441533.5:ENST00000467971.5:ENST00000425899.5:ENST00000443492.5:ENST00000437066.5:ENST00000429791.5:ENST00000420786.5:ENST00000475823.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	59	2	1.86218	2.0672800000000002	2.27238	0.0161808	0.0100169	0.101453	0.0880217
chr1	67422143	67422241	477546	0	-	0.357143	(0.35,0.378]	chr1	57477	16	INTRON	INTRON	SERBP1	ENSG00000142864.15	ENST00000370994.8:ENST00000361219.11:ENST00000370995.6:ENST00000370990.5:ENST00000493607.1:ENST00000484880.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	59	2	1.76773	2.06725	2.36677	0.0373863	0.0139343	0.155878	0.0957526
chr1	246879699	246879799	681417	0	-	0.55	(0.515,0.57]	chr1	79929	20	INTRON	INTRON	AHCTF1	ENSG00000153207.16	ENST00000648844.2:ENST00000326225.3:ENST00000366508.5:ENST00000470300.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	38	2	1.9459	2.0671999999999997	2.1885	0.0429089	0.0202537	0.148082	0.121364
chr3	172162060	172162160	1560775	0	+	0.54	(0.515,0.57]	chr3	161551	131	INTRON	INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000421757.5:ENST00000469491.5:ENST00000336824.8:ENST00000423424.5:ENST00000416957.5:ENST00000478016.1:ENST00000443501.1:ENST00000476794.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	38	2	1.9459	2.0671999999999997	2.1885	0.0429089	0.0202537	0.148082	0.121364
chr5	139281642	139281741	2499253	0	+	0.434343	(0.408,0.44]	chr5	238886	8	INTRON	INTRON	MATR3:SNHG4	ENSG00000280987.4:ENSG00000281398.4	ENST00000509990.5:ENST00000506147.5:ENST00000512107.5:ENST00000361059.7:ENST00000506188.5:ENST00000394800.6:ENST00000502929.5:ENST00000504203.5:ENST00000514694.5:ENST00000507197.5:ENST00000509644.5:ENST00000505016.2:ENST00000505522.6:ENST00000502394.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	11	118	2	2.01128	2.067155	2.12303	0.00586883	0.00350473	0.0690758	0.052472
chr4	126726744	126726843	2237978	0	-	0.343434	(0.32,0.35]	chr4	219029	281	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	8	100	2	1.81388	2.067135	2.32039	0.0371014	0.00157464	0.139201	0.036631
chr7	107160260	107160357	3378336	0	+	0.257732	[0,0.28]	chr7	316304	8	UTR3	UTR3:EXON_MRNA	PRKAR2B	ENSG00000005249.13	ENST00000265717.5	protein_coding	protein_coding	protein_coding	protein_coding	15	226	2	1.72927	2.0671	2.40493	0.0131511	9.61017e-4	0.0938857	0.0285129
chr14	69382618	69382716	5916145	0	-	0.469388	(0.44,0.476]	chr14	562055	16	INTRON	INTRON	ERH	ENSG00000100632.11	ENST00000557016.6:ENST00000216520.6:ENST00000557697.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	80	2	1.28614	2.06707	2.848	0.0497218	0.00215274	0.17488	0.0417866
chr1	185305833	185305928	603591	0	-	0.326316	(0.32,0.35]	chr1	71892	3	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	IVNS1ABP	ENSG00000116679.16	ENST00000367498.8:ENST00000480769.5:ENST00000459929.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	80	2	1.787	2.06705	2.3471	0.0156413	0.0151818	0.108535	0.101393
chr2	38601172	38601268	1099763	0	-	0.333333	(0.32,0.35]	chr2	117962	13	INTRON	INTRON	HNRNPLL	ENSG00000143889.16	ENST00000449105.8:ENST00000409636.5:ENST00000358367.8:ENST00000608859.5:ENST00000378915.7:ENST00000409328.5:ENST00000410076.5:ENST00000498516.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	80	2	1.787	2.06705	2.3471	0.0156413	0.0151818	0.108535	0.101393
chr10	74109948	74110045	4455644	0	+	0.43299	(0.408,0.44]	chr10	411497	4	INTRON	INTRON	VCL	ENSG00000035403.18	ENST00000623461.3:ENST00000372755.7:ENST00000624354.3:ENST00000211998.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	94	2	1.92319	2.0669649999999997	2.21074	0.0247322	0.0014216	0.12011	0.0346633
chr3	15053867	15053967	1619927	0	-	0.27	[0,0.28]	chr3	167446	4	SS3_PROX	SS3_PROX:INTRON	MRPS25	ENSG00000131368.9	ENST00000695375.1:ENST00000695376.1:ENST00000695377.1:ENST00000695378.1:ENST00000695379.1:ENST00000695380.1:ENST00000695381.1:ENST00000695382.1:ENST00000496484.2:ENST00000695334.1:ENST00000695384.1:ENST00000695322.1:ENST00000447299.2:ENST00000695383.1:ENST00000474866.2:ENST00000695385.1:ENST00000695386.1:ENST00000420267.6:ENST00000695387.1:ENST00000695388.1:ENST00000695389.1:ENST00000695390.1:ENST00000695391.1:ENST00000695392.1:ENST00000449354.7:ENST00000695393.1:ENST00000695394.1:ENST00000253686.7:ENST00000695395.1:ENST00000695323.1:ENST00000444840.6:ENST00000695396.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	91	2	1.60899	2.0669399999999998	2.52489	0.0503341	0.0084136	0.156383	0.082518
chr2	61216568	61216666	1127925	0	-	0.418367	(0.408,0.44]	chr2	121157	15	INTRON	INTRON	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000411912.5:ENST00000463046.5:ENST00000476716.5:ENST00000472689.5:ENST00000472706.5:ENST00000490527.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	54	2	2.00228	2.066925	2.13157	0.0389732	0.0109031	0.143072	0.0923273
chr20	37212460	37212560	7266472	0	+	0.41	(0.408,0.44]	chr20	738433	19	INTRON	INTRON	RPN2	ENSG00000118705.17	ENST00000373622.9:ENST00000237530.11	protein_coding	protein_coding	protein_coding	protein_coding	5	54	2	2.00228	2.066925	2.13157	0.0389732	0.0109031	0.143072	0.0923273
chr9	131413523	131413622	4217164	0	+	0.525253	(0.515,0.57]	chr9	386720	189	INTRON	INTRON	PRRC2B	ENSG00000288701.1	ENST00000682525.1:ENST00000684596.1:ENST00000683519.1:ENST00000682501.1	protein_coding	protein_coding	protein_coding	protein_coding	7	59	2	1.32981	2.0669049999999998	2.804	0.0640038	0.00215855	0.199279	0.0417866
chr21	37077932	37078031	7404867	0	+	0.282828	(0.28,0.32]	chr21	754521	41	INTRON	INTRON	TTC3	ENSG00000182670.14	ENST00000492275.6:ENST00000418766.6:ENST00000485402.5:ENST00000450533.6:ENST00000438055.5:ENST00000696812.1:ENST00000696811.1:ENST00000463216.6:ENST00000481605.6:ENST00000540756.5:ENST00000494243.5:ENST00000399010.5:ENST00000411496.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	124	2	1.67134	2.066785	2.46223	0.0387947	8.96176e-4	0.143072	0.0273866
chr15	41082172	41082271	6152892	0	-	0.474747	(0.44,0.476]	chr15	585399	7	INTRON	INTRON	INO80	ENSG00000128908.18	ENST00000648947.1:ENST00000401393.7:ENST00000558357.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	34	2	1.83899	2.06662	2.29425	0.0589734	0.0518406	0.176696	0.167915
chr6	3264621	3264720	2789302	0	+	0.444444	(0.44,0.476]	chr6	263453	4	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	PSMG4	ENSG00000180822.12	ENST00000509933.1:ENST00000380306.8:ENST00000380305.4:ENST00000438998.7:ENST00000419065.6:ENST00000473000.2:ENST00000324987.4:ENST00000451246.2:ENST00000454610.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	34	2	1.83899	2.06662	2.29425	0.0589734	0.0518406	0.176696	0.167915
chr6	110883310	110883409	2939029	0	+	0.454545	(0.44,0.476]	chr6	276765	73	INTRON	INTRON	AMD1	ENSG00000123505.19	ENST00000451850.6:ENST00000675380.1:ENST00000368882.8:ENST00000672937.2:ENST00000368885.8:ENST00000368877.9:ENST00000368876.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	96	2	1.68502	2.06657	2.44812	0.0115528	0.00368597	0.0962115	0.0535094
chr10	63243465	63243565	4633162	0	-	0.41	(0.408,0.44]	chr10	426215	231	INTRON	INTRON	JMJD1C	ENSG00000171988.20	ENST00000399262.7:ENST00000402544.5:ENST00000542921.5:ENST00000469152.5:ENST00000489372.4:ENST00000633035.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	54	2	1.53263	2.066555	2.60048	0.0733439	0.00484324	0.190051	0.0640618
chr16	89388487	89388586	6542570	0	-	0.50505	(0.476,0.515]	chr16	634240	150	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000647238.1:ENST00000644045.1:ENST00000643147.1:ENST00000644139.1:ENST00000568512.6:ENST00000566973.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	86	2	1.87147	2.06649	2.26151	0.0157856	0.0038595	0.109464	0.0542786
chr3	43492622	43492722	1674140	0	-	0.33	(0.32,0.35]	chr3	170972	595	INTRON	INTRON	ANO10	ENSG00000160746.13	ENST00000292246.8:ENST00000350459.8:ENST00000396091.7:ENST00000414522.6:ENST00000451430.6:ENST00000448045.1	protein_coding	protein_coding	protein_coding	protein_coding	4	52	2	1.77704	2.066475	2.35591	0.0719969	0.0128129	0.187322	0.0990564
chr2	20329154	20329252	1076568	0	-	0.346939	(0.32,0.35]	chr2	115035	14	INTRON	INTRON	PUM2	ENSG00000055917.16	ENST00000361078.7:ENST00000442400.5:ENST00000420234.5:ENST00000429419.6:ENST00000432105.5:ENST00000446940.5:ENST00000424110.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	88	2	1.74705	2.066435	2.38582	0.0138529	0.0128435	0.0990564	0.0953077
chr5	146141957	146142056	2746980	0	-	0.494949	(0.476,0.515]	chr5	258805	18	EXON_MRNA	EXON_MRNA:INTRON	LARS1	ENSG00000133706.19	ENST00000674174.1:ENST00000674170.1:ENST00000674479.1:ENST00000674309.1:ENST00000674218.1:ENST00000674467.1:ENST00000674290.1:ENST00000674447.1:ENST00000674270.1:ENST00000674383.1:ENST00000674191.1:ENST00000674158.1:ENST00000506231.6:ENST00000674471.1:ENST00000674181.1:ENST00000394434.7:ENST00000674398.1:ENST00000674277.1:ENST00000274562.13:ENST00000510191.5:ENST00000504323.6:ENST00000674310.1:ENST00000512412.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	13	133	2	1.89129	2.066365	2.24144	0.00569336	0.00122866	0.065612	0.0325799
chr14	30917485	30917583	5856775	0	-	0.295918	(0.28,0.32]	chr14	556453	35	INTRON	INTRON	STRN3	ENSG00000196792.12	ENST00000355683.9:ENST00000357479.10:ENST00000555358.5:ENST00000366206.2:ENST00000556577.1:ENST00000554991.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	95	2	1.59601	2.066245	2.53648	0.0236042	0.00925866	0.12907	0.0817766
chr1	16397369	16397466	36070	0	+	0.505155	(0.476,0.515]	chr1	4388	24	UTR3	UTR3:EXON_MRNA	SZRD1	ENSG00000055070.17	ENST00000401089.3:ENST00000401088.9:ENST00000492354.1	protein_coding	protein_coding	protein_coding	protein_coding	6	61	2	1.54629	2.06622	2.58615	0.0484352	0.00515536	0.153635	0.0650394
chr16	23418299	23418399	6463732	0	-	0.49	(0.476,0.515]	chr16	623760	2	SS5_PROX	SS5_PROX:INTRON	COG7	ENSG00000168434.13	ENST00000307149.10	protein_coding	protein_coding	protein_coding	protein_coding	6	61	2	1.54629	2.06622	2.58615	0.0484352	0.00515536	0.153635	0.0650394
chr10	133400930	133401028	4540284	0	+	0.438776	(0.408,0.44]	chr10	419084	9	INTRON	INTRON	MTG1	ENSG00000148824.19	ENST00000477902.6:ENST00000317502.11:ENST00000432508.3:ENST00000460848.5:ENST00000495014.5:ENST00000473735.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	12	119	2	1.54675	2.0662	2.58565	0.0189707	6.66092e-4	0.108861	0.0233804
chr3	128065844	128065932	1496667	0	+	0.465909	(0.44,0.476]	chr3	156283	2	INTRON	INTRON	SEC61A1	ENSG00000058262.10	ENST00000464451.5:ENST00000243253.8:ENST00000424880.2:ENST00000483956.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	61	2	1.70242	2.0661899999999997	2.42996	0.0282713	0.0104804	0.137721	0.0855777
chr15	44582515	44582615	6163919	0	-	0.37	(0.35,0.378]	chr15	587255	71	INTRON	INTRON	SPG11	ENSG00000104133.16	ENST00000684235.1:ENST00000261866.12:ENST00000559511.6:ENST00000682065.1:ENST00000682669.1:ENST00000683496.1:ENST00000682460.1:ENST00000682495.1:ENST00000684038.1:ENST00000683186.1:ENST00000683734.1:ENST00000683753.1:ENST00000535302.6:ENST00000427534.6:ENST00000561391.2:ENST00000558319.5:ENST00000684676.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	52	2	1.40722	2.0661	2.72498	0.0733776	0.0168499	0.190105	0.11068
chr16	67776079	67776179	6505378	0	-	0.48	(0.476,0.515]	chr16	629654	36	INTRON	INTRON	RANBP10	ENSG00000141084.12	ENST00000317506.8:ENST00000448631.6:ENST00000602506.5:ENST00000602677.5:ENST00000602525.5:ENST00000602638.5:ENST00000602815.5:ENST00000602887.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	53	2	1.96833	2.0660499999999997	2.16377	0.0243026	0.0195007	0.12011	0.119967
chr11	483268	483367	4719237	0	+	0.454545	(0.44,0.476]	chr11	436026	28	INTRON	INTRON	PTDSS2	ENSG00000174915.12	ENST00000532614.5:ENST00000308020.6:ENST00000531520.5:ENST00000526878.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	74	2	1.4592	2.0660100000000003	2.67282	0.0342963	0.00433875	0.147255	0.0579868
chr11	78352049	78352149	4999729	0	-	0.49	(0.476,0.515]	chr11	472466	103	INTRON	INTRON	GAB2	ENSG00000033327.13	ENST00000361507.5:ENST00000526030.1:ENST00000528886.5:ENST00000530915.1:ENST00000534823.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	33	2	1.99341	2.065975	2.13854	0.0776563	0.037389	0.196285	0.155878
chr13	41002429	41002529	5577362	0	-	0.5	(0.476,0.515]	chr13	533202	92	INTRON	INTRON	ELF1	ENSG00000120690.16	ENST00000239882.7:ENST00000405737.2	protein_coding	protein_coding	protein_coding	protein_coding	3	33	2	1.99341	2.065975	2.13854	0.0776563	0.037389	0.196285	0.155878
chr16	71802507	71802606	6514414	0	-	0.515152	(0.476,0.515]	chr16	631208	127	INTRON	INTRON	AP1G1	ENSG00000166747.13	ENST00000299980.9:ENST00000569748.5:ENST00000393512.7:ENST00000565009.5:ENST00000568327.5:ENST00000450149.6:ENST00000563259.5:ENST00000563104.5:ENST00000569185.5:ENST00000566161.5:ENST00000567583.1:ENST00000565412.5:ENST00000569975.5:ENST00000570297.5:ENST00000570017.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	33	2	1.99341	2.065975	2.13854	0.0776563	0.037389	0.196285	0.155878
chr6	149756932	149757032	2996106	0	+	0.5	(0.476,0.515]	chr6	280342	63	INTRON	INTRON	PCMT1	ENSG00000120265.19	ENST00000367384.7:ENST00000367378.6:ENST00000484601.6:ENST00000367380.9:ENST00000544496.5:ENST00000649295.1:ENST00000494411.6:ENST00000460828.6:ENST00000464889.7:ENST00000486585.2:ENST00000495487.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	33	2	1.99341	2.065975	2.13854	0.0776563	0.037389	0.196285	0.155878
chr8	53971360	53971460	3952782	0	-	0.51	(0.476,0.515]	chr8	362510	5	INTRON	INTRON	TCEA1	ENSG00000187735.15	ENST00000396401.7:ENST00000521604.7:ENST00000521086.6:ENST00000522635.5:ENST00000522397.5:ENST00000640382.1:ENST00000640041.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	33	2	1.99341	2.065975	2.13854	0.0776563	0.037389	0.196285	0.155878
chr12	98520605	98520705	5198669	0	+	0.45	(0.44,0.476]	chr12	491795	37	INTRON	INTRON	TMPO	ENSG00000120802.14	ENST00000548911.1:ENST00000556029.6:ENST00000343315.9:ENST00000266732.8:ENST00000393053.6:ENST00000546828.6:ENST00000261210.9:ENST00000549938.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	70	2	1.63371	2.06597	2.49823	0.0271664	0.00718224	0.123904	0.0756118
chr7	6462866	6462965	3478150	0	-	0.272727	[0,0.28]	chr7	325446	19	UTR3	UTR3:EXON_MRNA:INTRON	DAGLB:KDELR2	ENSG00000164535.15:ENSG00000136240.10	ENST00000436575.5:ENST00000463747.1:ENST00000258739.9:ENST00000454368.2:ENST00000490996.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	13	196	2	1.96691	2.065935	2.16496	0.0127963	0.00160778	0.0926667	0.0368228
chr5	28816746	28816846	2329917	0	+	0.25	[0,0.28]	chr5	225135	62	INTRON	INTRON	LINC02109	ENSG00000259786.7	ENST00000658190.1	lncRNA	lncRNA	lncRNA	lncRNA	7	100	2	1.53476	2.0659099999999997	2.59706	0.0398264	0.00894925	0.161534	0.0799922
chr3	6554291	6554390	1356784	0	+	0.272727	[0,0.28]	chr3	142508	412	INTRON	INTRON	ENSG00000189229	ENSG00000189229.12	ENST00000660158.1:ENST00000433639.1:ENST00000655754.1:ENST00000653839.1:ENST00000662846.1:ENST00000659876.1:ENST00000414438.2:ENST00000658468.1:ENST00000414603.1:ENST00000669512.1:ENST00000667028.1:ENST00000655541.1:ENST00000668643.1:ENST00000671568.1:ENST00000671036.1:ENST00000669798.1:ENST00000655753.1:ENST00000655856.1:ENST00000658398.1:ENST00000661518.1:ENST00000661279.1:ENST00000655495.1:ENST00000663041.1:ENST00000659827.1:ENST00000667716.1:ENST00000662508.1:ENST00000668416.1:ENST00000658133.1:ENST00000659651.1:ENST00000342990.4:ENST00000660054.1:ENST00000671370.1	lncRNA	lncRNA	lncRNA	lncRNA	10	142	2	1.66646	2.06583	2.4652	0.0162471	0.00587222	0.109464	0.0668557
chr9	130734654	130734754	4214071	0	+	0.46	(0.44,0.476]	chr9	386427	198	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000393293.4	protein_coding	protein_coding	protein_coding	protein_coding	15	155	2	1.92491	2.06582	2.20673	0.00301776	0.00136136	0.0507519	0.0336321
chr18	77973464	77973564	6990089	0	-	0.36	(0.35,0.378]	chr18	691890	2	INTRON	INTRON	LINC01029	ENSG00000265843.3	ENST00000657337.1:ENST00000669341.1:ENST00000671271.1:ENST00000668585.1:ENST00000666771.1:ENST00000667842.1:ENST00000661306.1:ENST00000662598.1:ENST00000662109.1:ENST00000662085.1:ENST00000583106.1:ENST00000582805.1	lncRNA	lncRNA	lncRNA	lncRNA	8	83	2	1.41068	2.065805	2.72093	0.0456704	0.00314173	0.149888	0.0514466
chr8	108224142	108224239	4023015	0	-	0.494845	(0.476,0.515]	chr8	367643	22	INTRON	INTRON	EIF3E	ENSG00000104408.11	ENST00000678042.1:ENST00000678773.1:ENST00000677409.1:ENST00000676892.1:ENST00000523674.2:ENST00000677674.1:ENST00000220849.10:ENST00000678937.1:ENST00000677084.1:ENST00000676706.1:ENST00000518100.6:ENST00000677040.1:ENST00000676698.1:ENST00000522352.6:ENST00000521297.2:ENST00000677501.1:ENST00000519030.6:ENST00000519627.2:ENST00000518345.2:ENST00000522445.6:ENST00000678334.1:ENST00000678023.1:ENST00000678797.1:ENST00000677614.1:ENST00000676642.1:ENST00000677965.1:ENST00000678901.1:ENST00000678243.1:ENST00000676663.1:ENST00000679198.1:ENST00000521614.6:ENST00000678004.1:ENST00000678881.1:ENST00000677590.1:ENST00000677272.1:ENST00000676530.1:ENST00000677696.1:ENST00000519517.5:ENST00000519413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	94	2	1.84346	2.0657900000000002	2.28812	0.0114152	0.00344676	0.095586	0.0517761
chr1	1866871	1866971	362599	0	-	0.55	(0.515,0.57]	chr1	42311	268	INTRON	INTRON	GNB1	ENSG00000078369.18	ENST00000610897.4:ENST00000615252.4:ENST00000378609.9:ENST00000439272.6:ENST00000434686.6:ENST00000472614.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	106	2	1.32818	2.06561	2.80304	0.0323878	1.68851e-4	0.133177	0.0112811
chr1	51872893	51872993	455239	0	-	0.3	(0.28,0.32]	chr1	54631	101	INTRON	INTRON	NRDC	ENSG00000078618.23	ENST00000354831.11:ENST00000539524.5:ENST00000352171.12:ENST00000491410.1:ENST00000468722.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	80	2	2.00989	2.0655900000000003	2.12129	0.0427801	0.00696605	0.148082	0.0754576
chr5	145733077	145733176	2745612	0	-	0.464646	(0.44,0.476]	chr5	258674	284	INTRON	INTRON	PRELID2	ENSG00000186314.12	ENST00000510259.5:ENST00000510594.1:ENST00000515161.1	protein_coding	processed_transcript	protein_coding	processed_transcript	7	76	2	1.65297	2.065505	2.47804	0.0331814	0.00325838	0.145918	0.0508595
chr17	31943655	31943754	6595743	0	+	0.343434	(0.32,0.35]	chr17	641548	28	INTRON	INTRON	SUZ12	ENSG00000178691.11	ENST00000322652.10:ENST00000580398.1	protein_coding	protein_coding	protein_coding	protein_coding	9	105	2	1.88021	2.0654500000000002	2.25069	0.00934678	0.00751788	0.0817766	0.0773151
chr2	31984792	31984892	1090859	0	-	0.32	(0.28,0.32]	chr2	116913	216	INTRON	INTRON	MEMO1:DPY30	ENSG00000162959.14:ENSG00000162961.14	ENST00000295065.9:ENST00000446765.5:ENST00000404530.6:ENST00000490459.5:ENST00000426310.6:ENST00000413686.1:ENST00000407893.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	83	2	1.68409	2.065445	2.4468	0.0548665	0.0037095	0.165463	0.0561833
chr7	96705624	96705723	3578534	0	-	0.525253	(0.515,0.57]	chr7	333204	84	INTRON	INTRON	SEM1	ENSG00000127922.10	ENST00000466986.5:ENST00000617133.4:ENST00000618105.4:ENST00000619259.4:ENST00000613919.4:ENST00000417009.5:ENST00000623693.3:ENST00000623498.3:ENST00000444799.5:ENST00000449279.5:ENST00000488005.5:ENST00000413065.5:ENST00000248566.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	38	2	1.8707	2.06541	2.26012	0.0523213	0.0160033	0.160182	0.109464
chr16	16502118	16502218	6310883	0	+	0.49	(0.476,0.515]	chr16	604098	21	INTRON	INTRON	ENSG00000260126	ENSG00000260126.2	ENST00000567465.2	lncRNA	lncRNA	lncRNA	lncRNA	13	132	2	1.88424	2.06539	2.24654	0.00370373	0.00346427	0.0539802	0.0535094
chr1	222493593	222493693	641425	0	-	0.37	(0.35,0.378]	chr1	75672	10	INTRON	INTRON	ENSG00000276997	ENSG00000276997.4	ENST00000613697.1:ENST00000619187.4:ENST00000620399.1	lncRNA	lncRNA	lncRNA	lncRNA	8	81	2	1.49914	2.065335	2.63153	0.0306686	0.00562761	0.143385	0.0653997
chr13	30464130	30464220	5569922	0	-	0.366667	(0.35,0.378]	chr13	532383	6	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HMGB1	ENSG00000189403.15	ENST00000341423.10:ENST00000405805.5:ENST00000339872.8:ENST00000399489.5:ENST00000399494.5:ENST00000326004.4:ENST00000468384.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	148	2	1.55433	2.06533	2.57633	0.0164412	6.29105e-4	0.110041	0.0230581
chr1	779492	779592	27	0	+	0.6	(0.57,1]	chr1	5	4	SS5_PROX	SS5_PROX:INTRON	LINC01409	ENSG00000237491.10	ENST00000412115.2:ENST00000655765.1:ENST00000670700.1:ENST00000657896.1:ENST00000429505.6:ENST00000434264.6:ENST00000457084.1:ENST00000658648.1:ENST00000656571.1:ENST00000669749.1:ENST00000665867.1:ENST00000665719.1:ENST00000666217.1:ENST00000651411.1:ENST00000589899.5:ENST00000609830.1:ENST00000443772.2	lncRNA	lncRNA	lncRNA	lncRNA	5	28	2	1.89351	2.06531	2.23711	0.0255126	0.0172108	0.133676	0.104099
chr11	57303577	57303675	4952673	0	-	0.602041	(0.57,1]	chr11	464753	2	INTRON	INTRON	TNKS1BP1	ENSG00000149115.14	ENST00000528882.5:ENST00000358252.8:ENST00000532437.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	28	2	1.89351	2.06531	2.23711	0.0255126	0.0172108	0.133676	0.104099
chr7	102474835	102474935	3588472	0	-	0.58	(0.57,1]	chr7	334974	3	SS3_PROX	SS3_PROX:INTRON	POLR2J	ENSG00000005075.16	ENST00000292614.10	protein_coding	protein_coding	protein_coding	protein_coding	5	28	2	1.89351	2.06531	2.23711	0.0255126	0.0172108	0.133676	0.104099
chr3	138822117	138822217	1831374	0	-	0.4	(0.378,0.408]	chr3	184062	252	INTRON	INTRON	PIK3CB	ENSG00000051382.9	ENST00000674063.1:ENST00000477593.5:ENST00000462898.5:ENST00000483968.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	108	2	1.84255	2.0652399999999997	2.28793	0.0099264	0.00291235	0.0839368	0.0494641
chr2	54987998	54988098	1120779	0	-	0.51	(0.476,0.515]	chr2	120141	3	SS3_PROX	SS3_PROX:INTRON	RTN4	ENSG00000115310.19	ENST00000394609.6:ENST00000404909.5:ENST00000394611.6:ENST00000317610.11:ENST00000357732.8:ENST00000337526.11:ENST00000357376.7:ENST00000405240.5:ENST00000438462.1	protein_coding	protein_coding	protein_coding	protein_coding	6	61	2	1.91368	2.065225	2.21677	0.0207026	0.0135123	0.110999	0.101363
chr1	246922163	246922262	681865	0	-	0.494949	(0.476,0.515]	chr1	80043	34	INTRON	INTRON	AHCTF1	ENSG00000153207.16	ENST00000648844.2:ENST00000326225.3:ENST00000366508.5	protein_coding	protein_coding	protein_coding	protein_coding	7	73	2	1.99457	2.06515	2.13573	0.0119549	0.009924	0.0899583	0.0877296
chr8	102356076	102356176	4012185	0	-	0.27	[0,0.28]	chr8	367218	86	INTRON	INTRON	UBR5	ENSG00000104517.13	ENST00000520539.6:ENST00000220959.8:ENST00000521922.5	protein_coding	protein_coding	protein_coding	protein_coding	6	75	2	1.53476	2.06512	2.59548	0.0398264	0.0346067	0.161534	0.136649
chr20	47273815	47273915	7348672	0	-	0.35	(0.32,0.35]	chr20	749288	110	INTRON	INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000467200.6:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000468376.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	76	2	2.06478	2.065055	2.06533	0.0174225	0.0147778	0.106702	0.10453
chr10	96526912	96527012	4673817	0	-	0.28	[0,0.28]	chr10	430653	3	SS5_PROX	SS5_PROX:INTRON	TM9SF3	ENSG00000077147.16	ENST00000371142.9:ENST00000649367.1:ENST00000485093.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	58	2	1.79953	2.06504	2.33055	0.062338	0.0377477	0.175343	0.156608
chr15	28278279	28278378	6123622	0	-	0.585859	(0.57,1]	chr15	583381	29	INTRON	INTRON	HERC2	ENSG00000128731.18	ENST00000261609.13:ENST00000564734.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	63	2	1.76082	2.065025	2.36923	0.00761391	7.89579e-4	0.0776172	0.0259532
chr15	28161995	28162094	6122386	0	-	0.424242	(0.408,0.44]	chr15	583064	88	INTRON	INTRON	HERC2	ENSG00000128731.18	ENST00000261609.13:ENST00000650509.1:ENST00000569772.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	33	2	1.85305	2.065015	2.27698	0.0583528	0.0543543	0.182243	0.167723
chr3	32560028	32560128	1650013	0	-	0.42	(0.408,0.44]	chr3	169157	137	INTRON	INTRON	DYNC1LI1	ENSG00000144635.9	ENST00000273130.9:ENST00000481915.5:ENST00000432458.6:ENST00000413350.5:ENST00000424991.1:ENST00000475193.1:ENST00000474077.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	33	2	1.85305	2.065015	2.27698	0.0583528	0.0543543	0.182243	0.167723
chrX	11384672	11384772	7761201	0	-	0.41	(0.408,0.44]	chrX	793522	489	INTRON	INTRON	ARHGAP6	ENSG00000047648.23	ENST00000380736.5:ENST00000337414.9:ENST00000495242.5:ENST00000489330.6:ENST00000380718.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	33	2	1.85305	2.065015	2.27698	0.0583528	0.0543543	0.182243	0.167723
chr18	9955688	9955786	6873770	0	+	0.346939	(0.32,0.35]	chr18	680907	16	UTR3	UTR3:EXON_MRNA	VAPA	ENSG00000101558.14	ENST00000400000.7	protein_coding	protein_coding	protein_coding	protein_coding	14	141	2	1.29206	2.065	2.83794	0.0308236	9.00082e-4	0.143385	0.0277303
chr7	157158015	157158115	3454130	0	+	0.38	(0.378,0.408]	chr7	322895	183	INTRON	INTRON	UBE3C	ENSG00000009335.18	ENST00000611269.4:ENST00000348165.10:ENST00000389103.4:ENST00000430750.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	83	2	1.39434	2.064955	2.73557	0.0349817	0.00360869	0.149337	0.0533855
chr4	1949889	1949986	1911375	0	+	0.42268	(0.408,0.44]	chr4	191793	12	INTRON	INTRON	NSD2	ENSG00000109685.19	ENST00000508803.6:ENST00000382891.9:ENST00000353275.9:ENST00000382892.6:ENST00000382895.7:ENST00000312087.10:ENST00000677559.1:ENST00000511904.1:ENST00000513726.5:ENST00000482415.6:ENST00000514329.5:ENST00000502425.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	65	2	2.04611	2.064935	2.08376	0.016628	0.0129886	0.102621	0.0991656
chr6	17672324	17672423	3065862	0	-	0.50505	(0.476,0.515]	chr6	284852	24	INTRON	INTRON	NUP153	ENSG00000124789.12	ENST00000613258.4:ENST00000537253.5:ENST00000262077.3	protein_coding	protein_coding	protein_coding	protein_coding	9	93	2	1.78749	2.06493	2.34237	0.0157618	0.00223831	0.101453	0.0435144
chr7	139401736	139401836	3438016	0	+	0.52	(0.515,0.57]	chr7	320348	2	SS3_PROX	SS3_PROX:INTRON	LUC7L2:FMC1-LUC7L2	ENSG00000146963.18:ENSG00000269955.2	ENST00000541170.7:ENST00000541515.3:ENST00000619796.4:ENST00000354926.9:ENST00000456182.5:ENST00000263545.7:ENST00000463912.5:ENST00000498518.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	94	2	1.43443	2.064925	2.69542	0.0306384	3.15632e-4	0.131364	0.0159645
chr11	9578972	9579070	4730852	0	+	0.571429	(0.57,1]	chr11	438106	12	EXON_MRNA	EXON_MRNA:INTRON	WEE1	ENSG00000166483.12	ENST00000680141.1:ENST00000450114.7:ENST00000299613.10:ENST00000524549.1:ENST00000681684.1:ENST00000524612.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	30	2	1.34554	2.064815	2.78409	0.0508971	0.0116033	0.176247	0.0889104
chr12	50011133	50011233	5322532	0	-	0.51	(0.476,0.515]	chr12	507391	41	INTRON	INTRON	RACGAP1	ENSG00000161800.13	ENST00000312377.10:ENST00000427314.6:ENST00000454520.6:ENST00000551016.5:ENST00000547905.5:ENST00000548320.5:ENST00000548598.5:ENST00000552310.5:ENST00000550149.5:ENST00000546786.5:ENST00000546595.5:ENST00000551145.5:ENST00000548824.5:ENST00000548644.5:ENST00000551260.5:ENST00000546723.5:ENST00000552921.5:ENST00000548247.1:ENST00000552157.5:ENST00000546764.5:ENST00000551876.5:ENST00000549777.5:ENST00000550651.5:ENST00000552004.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	69	2	1.9127	2.0647349999999998	2.21677	0.0207026	0.00864134	0.110999	0.0840615
chr14	21215207	21215306	5834614	0	-	0.383838	(0.378,0.408]	chr14	554424	17	INTRON	INTRON	HNRNPC	ENSG00000092199.19	ENST00000336053.10:ENST00000553300.6:ENST00000554969.5:ENST00000556142.5:ENST00000554455.5:ENST00000430246.6:ENST00000553753.5:ENST00000555309.5:ENST00000555914.5:ENST00000557442.5:ENST00000556628.5:ENST00000556513.5:ENST00000555883.5:ENST00000557201.5:ENST00000556897.5:ENST00000420743.6:ENST00000557157.5:ENST00000554539.5:ENST00000554383.5:ENST00000554417.1:ENST00000555215.5:ENST00000555137.5:ENST00000554891.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	119	2	1.59634	2.06463	2.53292	0.0244222	4.51433e-4	0.12011	0.0192381
chr2	85543772	85543866	821614	0	+	0.489362	(0.476,0.515]	chr2	91572	1	UTR3	UTR3:EXON_MRNA	MAT2A	ENSG00000168906.13	ENST00000306434.8	protein_coding	protein_coding	protein_coding	protein_coding	41	406	2	1.81759	2.06462	2.31165	7.49074e-4	1.10262e-4	0.0251035	0.00945003
chr8	140528146	140528246	4075462	0	-	0.3	(0.28,0.32]	chr8	370170	81	UTR3	UTR3:EXON_MRNA	AGO2	ENSG00000123908.12	ENST00000220592.10	protein_coding	protein_coding	protein_coding	protein_coding	7	95	2	1.842	2.06457	2.28714	0.023346	0.00696126	0.118323	0.0754576
chr3	6585547	6585647	1357099	0	+	0.44	(0.408,0.44]	chr3	142522	11	INTRON	INTRON	ENSG00000189229	ENSG00000189229.12	ENST00000433639.1:ENST00000655754.1:ENST00000658468.1:ENST00000669512.1:ENST00000667028.1:ENST00000655541.1:ENST00000668643.1:ENST00000671568.1:ENST00000671036.1:ENST00000669798.1:ENST00000655753.1:ENST00000655856.1:ENST00000658398.1:ENST00000661518.1:ENST00000661279.1:ENST00000655495.1:ENST00000663041.1:ENST00000659827.1:ENST00000667716.1:ENST00000668416.1:ENST00000658133.1:ENST00000342990.4:ENST00000660054.1:ENST00000671370.1	lncRNA	lncRNA	lncRNA	lncRNA	8	75	2	1.3378	2.06452	2.79124	0.050805	0.00276922	0.175989	0.0469265
chr4	126663875	126663975	2237348	0	-	0.2	[0,0.28]	chr4	219023	1984	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	12	182	2	1.96691	2.064465	2.16202	0.0127963	0.00212824	0.0926667	0.042725
chr19	54201908	54202008	7098842	0	+	0.39	(0.378,0.408]	chr19	711938	4	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	RPS9	ENSG00000170889.14	ENST00000484121.5:ENST00000448962.5:ENST00000302907.9:ENST00000626547.2:ENST00000436445.5:ENST00000391752.5:ENST00000402367.5:ENST00000445961.5:ENST00000391751.7:ENST00000495002.5:ENST00000391753.6:ENST00000441429.1:ENST00000460761.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	64	2	1.76455	2.064415	2.36428	0.0441088	0.0180091	0.162255	0.106756
chr7	157205500	157205599	3454618	0	+	0.494949	(0.476,0.515]	chr7	322965	33	INTRON	INTRON	UBE3C	ENSG00000009335.18	ENST00000348165.10	protein_coding	protein_coding	protein_coding	protein_coding	9	93	2	1.99699	2.064395	2.1318	0.0110277	0.00333541	0.0873897	0.0528877
chr1	29058288	29058388	60409	0	+	0.2	[0,0.28]	chr1	7711	3	SS3_PROX	SS3_PROX:INTRON	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000647918.1:ENST00000646800.1:ENST00000644342.1:ENST00000646189.1:ENST00000482464.6:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000646260.1:ENST00000373798.5:ENST00000644600.1:ENST00000649674.1:ENST00000643173.1:ENST00000343067.9:ENST00000644780.1:ENST00000650265.1:ENST00000648181.1:ENST00000643604.1:ENST00000648891.1:ENST00000373797.2:ENST00000349460.9:ENST00000645184.1:ENST00000645111.1:ENST00000643302.1:ENST00000642643.1:ENST00000636666.1:ENST00000644848.1:ENST00000644470.1:ENST00000646871.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	111	2	1.73226	2.064265	2.39627	0.0524108	0.00264102	0.160429	0.0473326
chr5	28858234	28858334	2330332	0	+	0.28	[0,0.28]	chr5	225135	477	INTRON	INTRON	LINC02109	ENSG00000259786.7	ENST00000658190.1	lncRNA	lncRNA	lncRNA	lncRNA	6	91	2	1.53147	2.064265	2.59706	0.0533898	0.00894925	0.179876	0.0799922
chr7	105377650	105377750	3603793	0	-	0.46	(0.44,0.476]	chr7	336161	707	INTRON	INTRON	SRPK2	ENSG00000135250.17	ENST00000393651.8:ENST00000482897.5:ENST00000460391.5:ENST00000462282.5:ENST00000465112.5:ENST00000482862.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	10	96	2	1.74196	2.0641599999999998	2.38636	0.00909881	0.0047296	0.0855292	0.0600445
chr12	56113369	56113465	5145680	0	+	0.458333	(0.44,0.476]	chr12	486195	6	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	PA2G4	ENSG00000170515.14	ENST00000552766.5:ENST00000303305.11	protein_coding	protein_coding	protein_coding	protein_coding	14	135	2	1.62574	2.0641499999999997	2.50256	0.0100027	0.00102082	0.084484600000000007	0.0294041
chr6	13956490	13956589	2822495	0	+	0.515152	(0.476,0.515]	chr6	265130	308	INTRON	INTRON	RNF182	ENSG00000180537.13	ENST00000537663.5:ENST00000488763.5:ENST00000544682.5:ENST00000420478.2:ENST00000488300.6:ENST00000471906.1:ENST00000537388.1:ENST00000423553.6	protein_coding	protein_coding	protein_coding	protein_coding	5	53	2	2.01953	2.0641350000000003	2.10874	0.0285608	0.0163662	0.12666	0.109586
chr21	46424943	46425040	7422266	0	+	0.391753	(0.378,0.408]	chr21	756886	25	INTRON	INTRON	PCNT	ENSG00000160299.18	ENST00000695558.1:ENST00000359568.10:ENST00000480896.5:ENST00000695527.1:ENST00000695528.1:ENST00000695529.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	41	2	1.59317	2.0641	2.53503	0.0603812	0.0319942	0.19151	0.13174
chr3	196069700	196069792	1897424	0	-	0.315217	(0.28,0.32]	chr3	189956	1	SS3_PROX	SS3_PROX:INTRON	TFRC	ENSG00000072274.13	ENST00000420415.5:ENST00000360110.9:ENST00000392396.7	protein_coding	protein_coding	protein_coding	protein_coding	54	590	2	1.70608	2.0641	2.42212	0.00130938	3.60685e-4	0.0333932	0.0175873
chr6	35656839	35656939	3087199	0	-	0.43	(0.408,0.44]	chr6	288789	136	INTRON	INTRON	FKBP5	ENSG00000096060.15	ENST00000536438.5:ENST00000539068.5:ENST00000357266.9:ENST00000542713.1	protein_coding	protein_coding	protein_coding	protein_coding	7	76	2	1.70409	2.0640650000000003	2.42404	0.028108	0.00413548	0.137011	0.0566868
chr16	22472547	22472645	6322303	0	+	0.510204	(0.476,0.515]	chr16	605356	3	INTRON	INTRON	SMG1P1	ENSG00000237296.10	ENST00000381231.5:ENST00000309865.11:ENST00000691423.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	4	44	2	1.92984	2.063965	2.19809	0.0466474	0.020317	0.151522	0.121522
chr2	38331096	38331196	1098880	0	-	0.48	(0.476,0.515]	chr2	117856	117	INTRON	INTRON	ATL2	ENSG00000119787.14	ENST00000378954.9:ENST00000406122.5:ENST00000405384.6:ENST00000402054.5:ENST00000419554.6:ENST00000651368.1:ENST00000452935.6:ENST00000449130.5:ENST00000443098.5:ENST00000456736.5:ENST00000474535.2:ENST00000472097.1:ENST00000451483.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	44	2	1.92984	2.063965	2.19809	0.0466474	0.020317	0.151522	0.121522
chr2	87487101	87487201	826243	0	+	0.48	(0.476,0.515]	chr2	92432	61	INTRON	INTRON	CYTOR:ENSG00000284879	ENSG00000222041.12:ENSG00000284879.1	ENST00000642796.1:ENST00000643589.1:ENST00000642451.1:ENST00000646386.1:ENST00000644478.1:ENST00000409139.6:ENST00000331944.10:ENST00000644125.1:ENST00000643743.1:ENST00000644577.1:ENST00000643276.1:ENST00000409898.2:ENST00000419680.6:ENST00000644976.1:ENST00000643070.1:ENST00000646855.1:ENST00000414584.1:ENST00000455131.5:ENST00000646636.1:ENST00000642293.1:ENST00000423846.5:ENST00000644040.1:ENST00000645138.1:ENST00000437561.2:ENST00000629257.1	lncRNA	lncRNA	lncRNA	lncRNA	4	44	2	1.92984	2.063965	2.19809	0.0466474	0.020317	0.151522	0.121522
chr6	131696618	131696718	2960794	0	+	0.48	(0.476,0.515]	chr6	278351	26	INTRON	INTRON	ENPP3	ENSG00000154269.15	ENST00000414305.5:ENST00000357639.8:ENST00000358229.6	protein_coding	protein_coding	protein_coding	protein_coding	4	44	2	1.92984	2.063965	2.19809	0.0466474	0.020317	0.151522	0.121522
chr7	75458111	75458211	3558648	0	-	0.5	(0.476,0.515]	chr7	331545	155	INTRON	INTRON	POM121C	ENSG00000272391.6	ENST00000615331.5:ENST00000398379.2	protein_coding	protein_coding	protein_coding	protein_coding	4	44	2	1.92984	2.063965	2.19809	0.0466474	0.020317	0.151522	0.121522
chrX	16799882	16799982	7626413	0	+	0.34	(0.32,0.35]	chrX	780926	129	INTRON	INTRON	TXLNG	ENSG00000086712.13	ENST00000398155.4:ENST00000380122.10	protein_coding	protein_coding	protein_coding	protein_coding	5	54	2	1.68188	2.06384	2.4458	0.0425977	0.031521	0.148082	0.144381
chr5	138347552	138347651	2494828	0	+	0.464646	(0.44,0.476]	chr5	238465	7	UTR3	UTR3:EXON_MRNA	FAM53C	ENSG00000120709.11	ENST00000239906.10	protein_coding	protein_coding	protein_coding	protein_coding	10	85	2	1.24699	2.063805	2.88062	0.0484245	0.001878	0.172383	0.039073
chr9	96983724	96983824	4298690	0	-	0.39	(0.378,0.408]	chr9	395262	104	INTRON	INTRON	MFSD14C	ENSG00000196312.15	ENST00000647176.1:ENST00000645073.1:ENST00000637864.1:ENST00000652726.1:ENST00000637811.1:ENST00000650909.1	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript:transcribed_unprocessed_pseudogene	7	78	2	1.77782	2.0637849999999998	2.34975	0.0388177	0.0021928	0.143072	0.0435144
chr10	101789011	101789110	4680665	0	-	0.333333	(0.32,0.35]	chr10	431944	11	INTRON	INTRON	OGA	ENSG00000198408.14	ENST00000439817.5:ENST00000361464.8:ENST00000357797.9:ENST00000482611.5:ENST00000494347.5:ENST00000479811.5:ENST00000461645.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	46	2	1.61669	2.06365	2.51061	0.0578816	0.0364463	0.188651	0.138959
chr11	130080222	130080322	4885811	0	+	0.53	(0.515,0.57]	chr11	456911	91	INTRON	INTRON	APLP2	ENSG00000084234.18	ENST00000650012.1:ENST00000533616.5:ENST00000532456.5:ENST00000534761.5:ENST00000338167.10:ENST00000528499.5:ENST00000529701.1:ENST00000526330.5:ENST00000534001.1:ENST00000527702.5:ENST00000534582.5:ENST00000529235.5:ENST00000533713.5:ENST00000533618.5:ENST00000533195.5:ENST00000530132.5:ENST00000533532.5:ENST00000263574.9:ENST00000345598.9:ENST00000278756.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	34	2	1.60221	2.063625	2.52504	0.0581855	0.029342	0.188704	0.128055
chr14	64176957	64177057	5750149	0	+	0.53	(0.515,0.57]	chr14	546006	2	SS3_PROX	SS3_PROX:INTRON	SYNE2	ENSG00000054654.20	ENST00000344113.8:ENST00000358025.7:ENST00000555002.6:ENST00000554584.5:ENST00000394768.6:ENST00000555612.5:ENST00000553289.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	34	2	1.60221	2.063625	2.52504	0.0581855	0.029342	0.188704	0.128055
chr4	1724761	1724859	1910165	0	+	0.561224	(0.515,0.57]	chr4	191575	5	INTRON	INTRON	TACC3	ENSG00000013810.21	ENST00000458173.4:ENST00000651472.1:ENST00000612220.5:ENST00000484651.5:ENST00000313288.9:ENST00000467746.6:ENST00000493975.5:ENST00000652770.1:ENST00000651251.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	34	2	1.60221	2.063625	2.52504	0.0581855	0.029342	0.188704	0.128055
chr5	28831042	28831142	2330060	0	+	0.55	(0.515,0.57]	chr5	225135	205	INTRON	INTRON	LINC02109	ENSG00000259786.7	ENST00000658190.1	lncRNA	lncRNA	lncRNA	lncRNA	4	34	2	1.60221	2.063625	2.52504	0.0581855	0.029342	0.188704	0.128055
chr1	77711046	77711146	493630	0	-	0.36	(0.35,0.378]	chr1	58343	92	INTRON	INTRON	USP33	ENSG00000077254.14	ENST00000370794.7:ENST00000370793.5:ENST00000357428.5:ENST00000481579.5	protein_coding	protein_coding	protein_coding	protein_coding	4	43	2	1.58862	2.06359	2.53856	0.0615516	0.0326077	0.193423	0.133687
chr10	100357264	100357362	4507763	0	+	0.367347	(0.35,0.378]	chr10	415072	1	INTRON	INTRON	SCD	ENSG00000099194.6	ENST00000370355.3	protein_coding	protein_coding	protein_coding	protein_coding	4	43	2	1.58862	2.06359	2.53856	0.0615516	0.0326077	0.193423	0.133687
chr10	123155470	123155557	4533166	0	+	0.367816	(0.35,0.378]	chr10	418412	4	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	BUB3	ENSG00000154473.18	ENST00000368865.9:ENST00000368859.6:ENST00000368858.9:ENST00000407911.2	protein_coding	protein_coding	protein_coding	protein_coding	4	43	2	1.58862	2.06359	2.53856	0.0615516	0.0326077	0.193423	0.133687
chr4	70925334	70925434	1970735	0	+	0.33	(0.32,0.35]	chr4	197571	224	INTRON	INTRON	MOB1B	ENSG00000173542.9	ENST00000502869.5:ENST00000509041.5:ENST00000309395.7:ENST00000396051.2:ENST00000511449.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	87	2	1.6309	2.0635000000000003	2.4961	0.0198698	0.00967886	0.120668	0.0828038
chr17	35604909	35605007	6599714	0	+	0.44898	(0.44,0.476]	chr17	642245	35	INTRON	INTRON	AP2B1	ENSG00000006125.18	ENST00000589774.5:ENST00000616784.4:ENST00000621914.4:ENST00000620039.4:ENST00000616681.4:ENST00000621668.4:ENST00000610402.5:ENST00000612035.4:ENST00000591610.5:ENST00000590538.5:ENST00000614600.4:ENST00000590432.5:ENST00000612116.5:ENST00000618940.4:ENST00000592167.5:ENST00000593014.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	90	2	1.24474	2.0635	2.88226	0.070785699999999993	3.71378e-4	0.184528	0.0173619
chr3	6555588	6555688	1356797	0	+	0.34	(0.32,0.35]	chr3	142508	425	INTRON	INTRON	ENSG00000189229	ENSG00000189229.12	ENST00000660158.1:ENST00000433639.1:ENST00000655754.1:ENST00000653839.1:ENST00000662846.1:ENST00000659876.1:ENST00000414438.2:ENST00000658468.1:ENST00000414603.1:ENST00000669512.1:ENST00000667028.1:ENST00000655541.1:ENST00000668643.1:ENST00000671568.1:ENST00000671036.1:ENST00000669798.1:ENST00000655753.1:ENST00000655856.1:ENST00000658398.1:ENST00000661518.1:ENST00000661279.1:ENST00000655495.1:ENST00000663041.1:ENST00000659827.1:ENST00000667716.1:ENST00000662508.1:ENST00000668416.1:ENST00000658133.1:ENST00000659651.1:ENST00000342990.4:ENST00000660054.1:ENST00000671370.1	lncRNA	lncRNA	lncRNA	lncRNA	16	192	2	1.96308	2.063425	2.16377	0.00232334	0.00230068	0.0442989	0.0428247
chr5	79637257	79637357	2398980	0	+	0.31	(0.28,0.32]	chr5	231707	134	INTRON	INTRON	TENT2	ENSG00000164329.14	ENST00000423041.6:ENST00000504233.5:ENST00000453514.6:ENST00000428308.6:ENST00000296783.7	protein_coding	protein_coding	protein_coding	protein_coding	5	68	2	1.94591	2.063415	2.18092	0.0271832	0.0228482	0.125519	0.123904
chr6	34341561	34341661	3084262	0	-	0.41	(0.408,0.44]	chr6	288628	3	SS5_PROX	SS5_PROX:INTRON	NUDT3:RPS10-NUDT3	ENSG00000272325.2:ENSG00000270800.3	ENST00000607016.2:ENST00000639725.1:ENST00000639877.1:ENST00000605528.2	protein_coding	protein_coding	protein_coding	protein_coding	9	95	2	1.93275	2.063365	2.19398	0.00938746	0.0043348	0.0817766	0.0600652
chr14	31010949	31011048	5857719	0	-	0.50505	(0.476,0.515]	chr14	556508	466	INTRON	INTRON	STRN3	ENSG00000196792.12	ENST00000355683.9:ENST00000357479.10:ENST00000555358.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	64	2	1.79187	2.063235	2.3346	0.0362169	0.00494807	0.138959	0.0646039
chr1	27442522	27442622	406288	0	-	0.4	(0.378,0.408]	chr1	48986	132	INTRON	INTRON	WASF2	ENSG00000158195.11	ENST00000618852.5:ENST00000536657.1	protein_coding	protein_coding	protein_coding	protein_coding	3	34	2	1.81685	2.06323	2.30961	0.0597868	0.055088	0.189982	0.165463
chr10	31903878	31903978	4590071	0	-	0.37	(0.35,0.378]	chr10	423163	419	INTRON	INTRON	ARHGAP12	ENSG00000165322.18	ENST00000344936.7:ENST00000375245.8:ENST00000396144.8:ENST00000375250.9:ENST00000311380.8	protein_coding	protein_coding	protein_coding	protein_coding	10	75	2	1.13602	2.06323	2.99044	0.0624578	0.00894806	0.19537	0.0799922
chr3	14407437	14407537	1369440	0	+	0.39	(0.378,0.408]	chr3	144308	42	INTRON	INTRON	SLC6A6	ENSG00000131389.18	ENST00000613060.4:ENST00000618278.4:ENST00000610642.4:ENST00000622810.4:ENST00000649500.1:ENST00000622186.5:ENST00000621751.4:ENST00000613930.4:ENST00000622176.4:ENST00000615188.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	34	2	1.81685	2.06323	2.30961	0.0597868	0.055088	0.189982	0.165463
chr3	183771208	183771308	1581037	0	+	0.39	(0.378,0.408]	chr3	163102	86	INTRON	INTRON	YEATS2	ENSG00000163872.16	ENST00000305135.10	protein_coding	protein_coding	protein_coding	protein_coding	3	34	2	1.81685	2.06323	2.30961	0.0597868	0.055088	0.189982	0.165463
chr6	140875804	140875904	3240907	0	-	0.39	(0.378,0.408]	chr6	301060	96	INTRON	INTRON	ENSG00000234147	ENSG00000234147.3	ENST00000650553.2:ENST00000692940.1:ENST00000683641.1:ENST00000682196.1:ENST00000684320.1:ENST00000683889.1:ENST00000683062.1:ENST00000682608.1:ENST00000455011.2:ENST00000682812.1:ENST00000683340.1:ENST00000683841.1:ENST00000683589.1:ENST00000684268.1:ENST00000683480.1	lncRNA	lncRNA	lncRNA	lncRNA	3	34	2	1.81685	2.06323	2.30961	0.0597868	0.055088	0.189982	0.165463
chr1	39573744	39573840	427766	0	-	0.5	(0.476,0.515]	chr1	51951	13	EXON_MRNA	EXON_MRNA:INTRON	PABPC4	ENSG00000090621.15	ENST00000677006.1:ENST00000372858.8:ENST00000372856.7:ENST00000372857.7:ENST00000372862.7:ENST00000676523.1:ENST00000677548.1:ENST00000678980.1:ENST00000677244.1:ENST00000677609.1:ENST00000679246.1:ENST00000678287.1:ENST00000678625.1:ENST00000470443.6:ENST00000451091.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	77	2	1.53534	2.0632099999999998	2.59108	0.0476737	0.00196853	0.170116	0.0402283
chr1	96813504	96813603	168878	0	+	0.30303	(0.28,0.32]	chr1	18274	2	UTR3	UTR3:EXON_MRNA	PTBP2	ENSG00000117569.19	ENST00000482253.5:ENST00000675735.1:ENST00000609116.5:ENST00000674951.1:ENST00000675080.1:ENST00000426398.3:ENST00000370197.5:ENST00000370198.5:ENST00000676292.1:ENST00000675365.1:ENST00000674579.1:ENST00000675401.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	121	2	1.92947	2.063195	2.19692	0.00937907	0.00700822	0.0860074	0.0718189
chrX	123606528	123606627	7877742	0	-	0.424242	(0.408,0.44]	chrX	802391	24	INTRON	INTRON	THOC2	ENSG00000125676.20	ENST00000448128.5:ENST00000245838.13:ENST00000441692.5:ENST00000492203.1:ENST00000497887.5:ENST00000618150.4:ENST00000432353.5:ENST00000455053.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	66	2	1.58763	2.06312	2.53861	0.0639217	0.00202413	0.177824	0.0416117
chr20	47312491	47312590	7349068	0	-	0.525253	(0.515,0.57]	chr20	749342	19	INTRON	INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000468376.2:ENST00000435836.5:ENST00000446894.5:ENST00000441977.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	46	2	1.8661	2.06311	2.26012	0.0274846	0.0160033	0.123904	0.109464
chr17	64501539	64501632	6815823	0	-	0.376344	(0.35,0.378]	chr17	673799	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DDX5	ENSG00000108654.16	ENST00000225792.10:ENST00000678890.1:ENST00000676601.1:ENST00000676575.1:ENST00000676969.1:ENST00000678810.1:ENST00000585317.2:ENST00000678110.1:ENST00000580026.6:ENST00000678757.1:ENST00000676581.1:ENST00000676785.1:ENST00000585111.2:ENST00000577922.6:ENST00000450599.7:ENST00000678814.1:ENST00000677726.1:ENST00000583212.2:ENST00000579461.2:ENST00000540698.6:ENST00000581230.5:ENST00000581693.5:ENST00000582326.2:ENST00000578491.2:ENST00000578804.5:ENST00000578758.5:ENST00000581237.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	23	266	2	1.6248	2.063035	2.50127	0.00582204	1.65867e-4	0.0687439	0.0118063
chr12	95477073	95477172	5193041	0	+	0.464646	(0.44,0.476]	chr12	491123	5	INTRON	INTRON	METAP2	ENSG00000111142.14	ENST00000535095.5:ENST00000546753.5:ENST00000261220.13:ENST00000323666.10:ENST00000553151.5:ENST00000549502.5:ENST00000550777.5:ENST00000551840.5:ENST00000549136.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	76	2	2.03266	2.062995	2.09333	0.0155853	0.00776307	0.109411	0.0757646
chr21	44145037	44145126	7416400	0	+	0.494382	(0.476,0.515]	chr21	756057	2	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GATD3	ENSG00000160221.18	ENST00000644251.1:ENST00000645487.1:ENST00000348499.9:ENST00000291577.11:ENST00000646873.1:ENST00000419699.1:ENST00000449622.6:ENST00000642815.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	10	103	2	1.66417	2.062975	2.46178	0.0164481	0.00159317	0.110077	0.0364566
chr1	171500887	171500986	253368	0	+	0.50505	(0.476,0.515]	chr1	30096	148	INTRON	INTRON	PRRC2C	ENSG00000117523.18	ENST00000647382.2:ENST00000367742.7:ENST00000476522.5:ENST00000338920.8:ENST00000467601.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	108	2	1.56302	2.062965	2.56291	0.0127429	0.00222582	0.0987441	0.0421176
chr4	78794492	78794592	1981566	0	+	0.21	[0,0.28]	chr4	198463	174	INTRON	INTRON	BMP2K	ENSG00000138756.19	ENST00000389010.7:ENST00000502613.3:ENST00000502871.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	182	2	1.89247	2.06292	2.23337	0.00679749	0.00499004	0.0744636	0.0617433
chr17	75181981	75182081	6836372	0	-	0.6	(0.57,1]	chr17	675515	2	SS5_PROX	SS5_PROX:INTRON	SUMO2	ENSG00000188612.12	ENST00000420826.7:ENST00000314523.7:ENST00000578238.2	protein_coding	protein_coding	protein_coding	protein_coding	5	28	2	1.74185	2.06288	2.38391	0.0401765	0.0104374	0.143911	0.0902296
chr1	113098885	113098985	188362	0	+	0.47	(0.44,0.476]	chr1	20895	1	SS5_PROX	SS5_PROX:INTRON	LRIG2	ENSG00000198799.12	ENST00000361127.6:ENST00000466069.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	82	2	2.05546	2.06281	2.07016	0.0151815	0.00467486	0.0994339	0.0631417
chr10	35399071	35399171	4425129	0	+	0.39	(0.378,0.408]	chr10	407905	38	INTRON	INTRON	CCNY	ENSG00000108100.18	ENST00000374706.5:ENST00000490012.6:ENST00000493157.6:ENST00000374704.8:ENST00000265375.13:ENST00000339497.7:ENST00000492478.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	46	2	1.88729	2.0627999999999997	2.23831	0.0532327	0.0179575	0.162538	0.114265
chr12	56298991	56299091	5334359	0	-	0.39	(0.378,0.408]	chr12	509605	3	SS3_PROX	SS3_PROX:INTRON	CS	ENSG00000062485.19	ENST00000351328.8:ENST00000549143.5:ENST00000548567.5:ENST00000542324.6:ENST00000548849.5:ENST00000549221.5:ENST00000546930.5:ENST00000548041.5:ENST00000550734.5:ENST00000551936.5:ENST00000551253.5:ENST00000552688.5:ENST00000551473.5:ENST00000547298.5:ENST00000551137.5:ENST00000550655.5:ENST00000551968.5:ENST00000550159.5:ENST00000551430.6:ENST00000552222.5:ENST00000547283.5:ENST00000550996.1:ENST00000550700.1:ENST00000551441.5:ENST00000550044.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	46	2	1.88729	2.0627999999999997	2.23831	0.0532327	0.0179575	0.162538	0.114265
chr20	62017106	62017206	7360430	0	-	0.4	(0.378,0.408]	chr20	750714	20	INTRON	INTRON	TAF4	ENSG00000130699.20	ENST00000252996.9:ENST00000608887.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	46	2	1.88729	2.0627999999999997	2.23831	0.0532327	0.0179575	0.162538	0.114265
chr1	19450629	19450728	388560	0	-	0.515152	(0.476,0.515]	chr1	46394	9	INTRON	INTRON	CAPZB	ENSG00000077549.19	ENST00000264202.8:ENST00000264203.7:ENST00000375142.5:ENST00000482808.2:ENST00000674449.1:ENST00000674390.1:ENST00000375144.6:ENST00000674432.1:ENST00000433834.5:ENST00000459967.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	44	2	1.86492	2.06263	2.26034	0.0550347	0.0166235	0.165463	0.110511
chr17	49743888	49743988	6793953	0	-	0.51	(0.476,0.515]	chr17	670424	108	INTRON	INTRON	FAM117A	ENSG00000121104.8	ENST00000240364.7:ENST00000513602.5:ENST00000503855.5:ENST00000514018.5:ENST00000505159.5:ENST00000506156.1:ENST00000515240.5:ENST00000509347.5:ENST00000503720.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	44	2	1.86492	2.06263	2.26034	0.0550347	0.0166235	0.165463	0.110511
chr2	177343962	177344062	1276663	0	-	0.49	(0.476,0.515]	chr2	134786	17	INTRON	INTRON	NFE2L2:ENSG00000213963	ENSG00000116044.16:ENSG00000213963.6	ENST00000464747.5:ENST00000397057.6:ENST00000456746.5:ENST00000447413.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	4	44	2	1.86492	2.06263	2.26034	0.0550347	0.0166235	0.165463	0.110511
chr7	148859303	148859403	3670513	0	-	0.51	(0.476,0.515]	chr7	340628	116	INTRON	INTRON	EZH2	ENSG00000106462.12	ENST00000683292.1:ENST00000320356.7:ENST00000492143.5:ENST00000478654.5:ENST00000350995.6:ENST00000460911.5:ENST00000683744.1:ENST00000682317.1:ENST00000682263.1:ENST00000684300.1:ENST00000476773.5:ENST00000483967.5:ENST00000498186.5:ENST00000483012.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	44	2	1.86492	2.06263	2.26034	0.0550347	0.0166235	0.165463	0.110511
chr7	23431502	23431602	3503277	0	-	0.38	(0.378,0.408]	chr7	326910	3	INTRON	INTRON	IGF2BP3	ENSG00000136231.14	ENST00000258729.8:ENST00000421467.6:ENST00000468263.5:ENST00000491719.5:ENST00000476938.5:ENST00000468005.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	57	2	1.94906	2.06257	2.17608	0.023282	0.0218783	0.123836	0.118176
chr7	148836023	148836122	3670277	0	-	0.50505	(0.476,0.515]	chr7	340610	29	INTRON	INTRON	EZH2	ENSG00000106462.12	ENST00000683292.1:ENST00000320356.7:ENST00000492143.5:ENST00000478654.5:ENST00000350995.6:ENST00000460911.5:ENST00000683744.1:ENST00000682317.1:ENST00000682263.1:ENST00000684300.1:ENST00000476773.5:ENST00000483967.5:ENST00000498186.5:ENST00000483012.1:ENST00000682401.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	40	2	1.80284	2.06257	2.3223	0.0519312	0.033161	0.159306	0.145899
chr11	67154601	67154701	4812801	0	+	0.48	(0.476,0.515]	chr11	448116	55	INTRON	INTRON	KDM2A	ENSG00000173120.15	ENST00000529006.7:ENST00000398645.6:ENST00000527157.1:ENST00000308783.9	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	44	2	1.99197	2.062505	2.13304	0.039572	0.024866	0.143072	0.132101
chr4	145157363	145157459	2255260	0	-	0.5	(0.476,0.515]	chr4	220223	10	INTRON	INTRON	OTUD4	ENSG00000164164.17	ENST00000455611.6:ENST00000454497.6:ENST00000447906.8:ENST00000514973.5:ENST00000505976.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	44	2	1.99197	2.062505	2.13304	0.039572	0.024866	0.143072	0.132101
chr8	129876291	129876390	4062516	0	-	0.515152	(0.476,0.515]	chr8	369780	44	INTRON	INTRON	CYRIB	ENSG00000153310.21	ENST00000694912.1:ENST00000519824.6:ENST00000523288.5:ENST00000519110.5:ENST00000401979.6:ENST00000523509.5:ENST00000522746.5:ENST00000517654.5:ENST00000522250.5:ENST00000519540.5:ENST00000522941.5:ENST00000519142.5:ENST00000518879.5:ENST00000522702.5:ENST00000521223.5:ENST00000520204.5:ENST00000518283.5:ENST00000523993.5:ENST00000520254.5:ENST00000519020.5:ENST00000518167.5:ENST00000517672.5:ENST00000519070.5:ENST00000522361.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	44	2	1.99197	2.062505	2.13304	0.039572	0.024866	0.143072	0.132101
chr7	127820255	127820355	3404093	0	+	0.38	(0.378,0.408]	chr7	318140	123	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000468166.5:ENST00000465900.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	47	2	1.45712	2.062485	2.66785	0.0597975	0.0224639	0.189982	0.11692
chrX	71300957	71301051	7678193	0	+	0.446809	(0.44,0.476]	chrX	786120	10	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	NONO	ENSG00000147140.17	ENST00000677446.1:ENST00000677274.1:ENST00000535149.5:ENST00000420903.6:ENST00000678335.1:ENST00000678830.1:ENST00000677826.1:ENST00000473525.2:ENST00000678437.1:ENST00000676499.1:ENST00000676495.1:ENST00000678323.1:ENST00000677766.1:ENST00000679267.1:ENST00000677879.1:ENST00000677245.1:ENST00000373841.5:ENST00000276079.13:ENST00000679029.1:ENST00000677218.1:ENST00000676797.1:ENST00000678660.1:ENST00000677014.1:ENST00000678231.1:ENST00000677612.1:ENST00000677977.1:ENST00000490044.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	54	2	1.9039	2.062465	2.22103	0.0501498	0.00776319	0.156383	0.0787356
chr3	172812112	172812212	1563852	0	+	0.51	(0.476,0.515]	chr3	161830	38	INTRON	INTRON	ECT2	ENSG00000114346.14	ENST00000232458.9:ENST00000540509.5:ENST00000392692.8:ENST00000417960.5:ENST00000441497.6:ENST00000437296.1:ENST00000486027.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	46	2	1.63962	2.062445	2.48527	0.03496	0.0346854	0.148144	0.13747500000000001
chr10	46027231	46027331	4608910	0	-	0.35	(0.32,0.35]	chr10	424583	4	SS5_PROX	SS5_PROX:INTRON	NCOA4	ENSG00000266412.6	ENST00000581486.6:ENST00000585056.5:ENST00000580070.5:ENST00000578454.5:ENST00000579039.2	protein_coding	protein_coding	protein_coding	protein_coding	6	72	2	1.59364	2.062355	2.53107	0.0413426	0.00860484	0.161557	0.0784134
chr2	175157947	175158047	1272239	0	-	0.46	(0.44,0.476]	chr2	134482	64	INTRON	INTRON	ATF2	ENSG00000115966.18	ENST00000345739.9:ENST00000426833.7:ENST00000264110.7:ENST00000409635.5:ENST00000428760.5:ENST00000392544.5:ENST00000417080.5:ENST00000456655.5:ENST00000421438.5:ENST00000429579.5:ENST00000415955.5:ENST00000409499.5:ENST00000435231.6:ENST00000437522.5:ENST00000409833.5:ENST00000413123.5:ENST00000445349.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	82	2	1.69823	2.0623299999999998	2.42643	0.0218548	0.0033369	0.11491	0.0528877
chr22	21784462	21784561	7560548	0	-	0.535354	(0.515,0.57]	chr22	773360	111	INTRON	INTRON	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	8	71	2	1.97035	2.06232	2.15429	0.0195832	0.00272344	0.109483	0.0481781
chr17	61791900	61791999	6808211	0	-	0.393939	(0.378,0.408]	chr17	672569	71	INTRON	INTRON	BRIP1	ENSG00000136492.10	ENST00000259008.7:ENST00000682755.1:ENST00000682453.1:ENST00000683039.1:ENST00000682989.1:ENST00000682589.1:ENST00000683235.1:ENST00000682477.1:ENST00000684584.1:ENST00000577598.5:ENST00000682066.1:ENST00000584322.2:ENST00000683381.1:ENST00000579028.2:ENST00000682611.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	35	2	1.76032	2.0623	2.36428	0.0721577	0.0441088	0.187433	0.162255
chr7	23426289	23426389	3503224	0	-	0.39	(0.378,0.408]	chr7	326906	71	INTRON	INTRON	IGF2BP3	ENSG00000136231.14	ENST00000258729.8:ENST00000421467.6:ENST00000468263.5:ENST00000479504.5:ENST00000466809.6:ENST00000491719.5:ENST00000465058.5:ENST00000469723.5:ENST00000476938.5:ENST00000468005.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	35	2	1.76032	2.0623	2.36428	0.0721577	0.0441088	0.187433	0.162255
chr8	102350386	102350486	4012128	0	-	0.35	(0.32,0.35]	chr8	367218	29	INTRON	INTRON	UBR5	ENSG00000104517.13	ENST00000520539.6:ENST00000220959.8:ENST00000521922.5	protein_coding	protein_coding	protein_coding	protein_coding	14	124	2	1.31155	2.0620849999999997	2.81262	0.0260854	0.00311322	0.133676	0.0498063
chr22	20027781	20027881	7477810	0	+	0.43	(0.408,0.44]	chr22	762628	61	INTRON	INTRON	TANGO2	ENSG00000183597.16	ENST00000401886.5:ENST00000471707.5:ENST00000432198.5:ENST00000475446.5:ENST00000420290.6:ENST00000432883.5:ENST00000434570.6:ENST00000447208.6:ENST00000456048.5:ENST00000411907.5:ENST00000398042.6:ENST00000399807.7:ENST00000450664.5:ENST00000450019.5:ENST00000327374.9:ENST00000479679.5:ENST00000430807.5:ENST00000401833.5:ENST00000434168.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	63	2	1.43792	2.0620700000000003	2.68622	0.062843	0.00418848	0.196433	0.0572071
chr19	38684917	38685016	7066101	0	+	0.454545	(0.44,0.476]	chr19	705486	363	INTRON	INTRON	ACTN4	ENSG00000130402.13	ENST00000252699.7:ENST00000588618.5:ENST00000440400.2:ENST00000424234.7:ENST00000589528.1:ENST00000390009.7:ENST00000495553.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	47	2	1.38039	2.062055	2.74372	0.0762718	0.0153007	0.195539	0.108569
chr12	26600	26700	5253908	0	-	0.58	(0.57,1]	chr12	499872	4	SS5_PROX	SS5_PROX:INTRON	WASH8P	ENSG00000226210.3	ENST00000400706.3	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	6	32	2	1.64415	2.06204	2.47993	0.0342575	0.007207	0.135558	0.0756278
chr14	23025932	23026010	5842360	0	-	0.371795	(0.35,0.378]	chr14	555468	2	UTR3	UTR3:EXON_MRNA:INTRON	PSMB5	ENSG00000100804.19	ENST00000555895.5:ENST00000361611.11:ENST00000460922.2:ENST00000493471.2:ENST00000425762.2	protein_coding	protein_coding	protein_coding	protein_coding	7	74	2	1.63783	2.06203	2.48623	0.0250627	0.00938784	0.133086	0.0817766
chr1	96736960	96737060	168093	0	+	0.46	(0.44,0.476]	chr1	18215	130	INTRON	INTRON	PTBP2	ENSG00000117569.19	ENST00000482253.5:ENST00000675735.1:ENST00000609116.5:ENST00000674951.1:ENST00000675080.1:ENST00000426398.3:ENST00000460706.5:ENST00000370197.5:ENST00000370198.5:ENST00000476419.5:ENST00000676292.1:ENST00000676096.1:ENST00000675365.1:ENST00000674579.1:ENST00000675401.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	54	2	1.69402	2.0619899999999998	2.42996	0.0456129	0.0104804	0.164236	0.0855777
chr20	43705955	43706052	7276452	0	+	0.474227	(0.44,0.476]	chr20	739765	2	INTRON	INTRON	MYBL2	ENSG00000101057.16	ENST00000396863.8:ENST00000217026.5	protein_coding	protein_coding	protein_coding	protein_coding	5	54	2	1.69402	2.0619899999999998	2.42996	0.0456129	0.0104804	0.164236	0.0855777
chr9	34044545	34044644	4245808	0	-	0.464646	(0.44,0.476]	chr9	390499	113	INTRON	INTRON	UBAP2	ENSG00000137073.24	ENST00000379238.7:ENST00000683659.1:ENST00000682239.1:ENST00000683140.1:ENST00000682209.1:ENST00000681980.1:ENST00000360802.6:ENST00000683252.1:ENST00000684158.1:ENST00000682914.1:ENST00000683717.1:ENST00000379239.9:ENST00000683084.1:ENST00000684754.1:ENST00000629575.2:ENST00000684298.1:ENST00000480885.5:ENST00000459988.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	54	2	1.69402	2.0619899999999998	2.42996	0.0456129	0.0104804	0.164236	0.0855777
chr4	185161426	185161524	2305788	0	-	0.285714	(0.28,0.32]	chr4	223136	19	UTR3	UTR3:EXON_MRNA	CFAP97	ENSG00000164323.15	ENST00000458385.7	protein_coding	protein_coding	protein_coding	protein_coding	7	88	2	1.45235	2.06194	2.67153	0.0543728	0.00436402	0.164972	0.060356
chr10	70756771	70756870	4448184	0	+	0.515152	(0.476,0.515]	chr10	410464	24	INTRON	INTRON	ADAMTS14	ENSG00000138316.11	ENST00000373207.2:ENST00000373208.5	protein_coding	protein_coding	protein_coding	protein_coding	7	73	2	1.78917	2.061885	2.3346	0.022887	0.00494807	0.118056	0.0646039
chr4	70947432	70947531	1970957	0	+	0.393939	(0.378,0.408]	chr4	197577	42	INTRON	INTRON	MOB1B	ENSG00000173542.9	ENST00000502869.5:ENST00000509041.5:ENST00000309395.7:ENST00000396051.2:ENST00000511449.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	9	93	2	1.91661	2.061865	2.20712	0.00978751	0.00588056	0.0835427	0.0691502
chr5	181311734	181311833	2563716	0	+	0.333333	(0.32,0.35]	chr5	245352	47	INTRON	INTRON	ENSG00000238035	ENSG00000238035.8	ENST00000499986.8	lncRNA	lncRNA	lncRNA	lncRNA	5	64	2	1.92705	2.061865	2.19668	0.0267365	0.021398	0.123719	0.123349
chr7	130180722	130180822	3638501	0	-	0.37	(0.35,0.378]	chr7	338371	18	INTRON	INTRON	TMEM209	ENSG00000146842.17	ENST00000397622.7:ENST00000473456.5:ENST00000462753.5:ENST00000467599.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	55	2	1.34146	2.0617900000000002	2.78212	0.0634598	0.0168532	0.19806000000000001	0.103549
chr7	105539523	105539622	3375759	0	+	0.464646	(0.44,0.476]	chr7	316053	24	INTRON	INTRON	RINT1	ENSG00000135249.8	ENST00000467392.5:ENST00000482041.5:ENST00000493041.5:ENST00000257700.7:ENST00000497979.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	118	2	1.60033	2.0617099999999997	2.52309	0.030306	2.58607e-4	0.130104	0.014326
chr6	34285760	34285860	3083701	0	-	0.43	(0.408,0.44]	chr6	288610	62	UTR3	UTR3:EXON_MRNA	NUDT3:RPS10-NUDT3	ENSG00000272325.2:ENSG00000270800.3	ENST00000607016.2:ENST00000639725.1	protein_coding	protein_coding	protein_coding	protein_coding	6	62	2	1.55035	2.06165	2.57295	0.0455214	0.00640423	0.164236	0.0694534
chr10	119579334	119579434	4705847	0	-	0.24	[0,0.28]	chr10	434205	1	INTRON	INTRON	TIAL1	ENSG00000151923.18	ENST00000369093.6:ENST00000436547.7:ENST00000489822.5:ENST00000497671.5:ENST00000470781.5:ENST00000369087.5:ENST00000470635.1:ENST00000412524.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	138	2	2.03217	2.0616399999999997	2.09111	0.0146933	0.00567932	0.0983813	0.0678837
chr11	68490371	68490471	4817629	0	+	0.4	(0.378,0.408]	chr11	448907	292	INTRON	INTRON	PPP6R3	ENSG00000110075.15	ENST00000530427.5:ENST00000528635.5:ENST00000529907.5:ENST00000533127.5:ENST00000534534.5:ENST00000529344.5:ENST00000524845.5:ENST00000393800.7:ENST00000265637.8:ENST00000524904.5:ENST00000393801.7:ENST00000265636.9:ENST00000529710.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	46	2	1.8252	2.06159	2.29798	0.0619563	0.0147606	0.174514	0.106702
chr15	58729594	58729694	6193314	0	-	0.38	(0.378,0.408]	chr15	589988	115	INTRON	INTRON	ADAM10	ENSG00000137845.15	ENST00000260408.8:ENST00000402627.5:ENST00000561288.1:ENST00000559053.1:ENST00000558733.5:ENST00000439637.5:ENST00000497846.5:ENST00000558004.1:ENST00000560608.5:ENST00000561149.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	46	2	1.8252	2.06159	2.29798	0.0619563	0.0147606	0.174514	0.106702
chr6	27127648	27127746	3072314	0	-	0.244898	[0,0.28]	chr6	285574	8	INTRON	INTRON	H2BC11	ENSG00000124635.9	ENST00000607124.1:ENST00000606923.1	protein_coding	protein_coding	protein_coding	protein_coding	12	161	2	1.65795	2.061575	2.4652	0.011799	0.00587222	0.0962115	0.0668557
chr17	48933509	48933591	6791653	0	-	0.426829	(0.408,0.44]	chr17	670081	3	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	SNF8	ENSG00000159210.10	ENST00000502492.6:ENST00000510558.6:ENST00000509995.5:ENST00000290330.7:ENST00000514089.5:ENST00000515572.5:ENST00000509989.5:ENST00000573795.5:ENST00000576353.5:ENST00000514929.1:ENST00000507302.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	54	2	1.78881	2.06156	2.33431	0.0370259	0.0129219	0.139194	0.0990564
chr7	32498097	32498197	3303259	0	+	0.37	(0.35,0.378]	chr7	306758	19	INTRON	INTRON	AVL9	ENSG00000105778.20	ENST00000485228.1:ENST00000318709.9:ENST00000459629.1:ENST00000409301.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	74	2	1.6756	2.06155	2.4475	0.0219737	0.0106974	0.123836	0.0862205
chr5	104204788	104204888	2442463	0	+	0.4	(0.378,0.408]	chr5	234410	995	INTRON	INTRON	LINC02163	ENSG00000251026.2	ENST00000662211.1:ENST00000666145.1	lncRNA	lncRNA	lncRNA	lncRNA	4	46	2	1.94681	2.061445	2.17608	0.0457723	0.0218783	0.149888	0.123836
chr22	20514008	20514107	7479411	0	+	0.50505	(0.476,0.515]	chr22	762951	52	INTRON	INTRON	MED15	ENSG00000099917.17	ENST00000445987.5:ENST00000444094.5:ENST00000414658.5:ENST00000486656.5:ENST00000433831.5:ENST00000432052.5:ENST00000292733.11:ENST00000263205.11:ENST00000477824.5:ENST00000406969.5:ENST00000382974.6:ENST00000441501.5:ENST00000438962.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	81	2	1.80755	2.06142	2.31529	0.0131326	0.00614783	0.0999551	0.0676501
chr11	85659127	85659226	5013423	0	-	0.313131	(0.28,0.32]	chr11	472883	15	UTR3	UTR3:EXON_MRNA	CREBZF	ENSG00000137504.15	ENST00000682836.1:ENST00000527447.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	88	2	1.38068	2.061215	2.74175	0.0590236	0.00457205	0.189982	0.0595107
chr10	69195572	69195668	4445229	0	+	0.302083	(0.28,0.32]	chr10	410115	3	SS5_PROX	SS5_PROX:INTRON	SUPV3L1	ENSG00000156502.14	ENST00000359655.9:ENST00000422378.1:ENST00000478227.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	57	2	2.0243	2.06112	2.09794	0.0364967	0.0340483	0.153759	0.134863
chr7	23450386	23450485	3503466	0	-	0.313131	(0.28,0.32]	chr7	326910	192	INTRON	INTRON	IGF2BP3	ENSG00000136231.14	ENST00000258729.8:ENST00000421467.6:ENST00000468263.5:ENST00000491719.5:ENST00000476938.5:ENST00000468005.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	57	2	2.0243	2.06112	2.09794	0.0364967	0.0340483	0.153759	0.134863
chr8	81712419	81712519	3979478	0	-	0.33	(0.32,0.35]	chr8	364623	32	INTRON	INTRON	ZFAND1	ENSG00000104231.11	ENST00000524305.5:ENST00000220669.10:ENST00000523096.5:ENST00000522520.5:ENST00000522032.1:ENST00000519464.5:ENST00000521895.5:ENST00000521287.5:ENST00000523431.5:ENST00000520635.5:ENST00000519523.5:ENST00000517588.5:ENST00000520604.5:ENST00000523361.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	52	2	2.04237	2.06111	2.07985	0.0375542	0.0303092	0.143025	0.140222
chr2	85543513	85543608	821610	0	+	0.410526	(0.408,0.44]	chr2	91568	6	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MAT2A	ENSG00000168906.13	ENST00000306434.8:ENST00000409017.1	protein_coding	protein_coding	protein_coding	protein_coding	25	255	2	1.70531	2.061075	2.41684	0.00496088	6.47399e-5	0.0615009	0.00667323
chr1	38997670	38997770	74462	0	+	0.43	(0.408,0.44]	chr1	9629	1	SS3_PROX	SS3_PROX:INTRON	AKIRIN1	ENSG00000174574.16	ENST00000432648.8:ENST00000372984.8:ENST00000446189.6:ENST00000531822.1	protein_coding	protein_coding	protein_coding	protein_coding	4	45	2	2.00768	2.0610749999999998	2.11447	0.035843	0.0285207	0.152216	0.12666
chr8	94878059	94878157	3800704	0	+	0.438776	(0.408,0.44]	chr8	352477	12	INTRON	INTRON	INTS8	ENSG00000164941.14	ENST00000523731.6:ENST00000524333.5:ENST00000343161.8:ENST00000523206.5:ENST00000520526.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	45	2	2.00768	2.0610749999999998	2.11447	0.035843	0.0285207	0.152216	0.12666
chr3	177094273	177094373	1871405	0	-	0.4	(0.378,0.408]	chr3	187392	27	INTRON	INTRON	TBL1XR1	ENSG00000177565.18	ENST00000457928.7:ENST00000430069.5:ENST00000673974.1:ENST00000631253.2:ENST00000352800.10:ENST00000422442.6:ENST00000428970.5:ENST00000424913.5:ENST00000437738.5:ENST00000431421.5:ENST00000635794.1:ENST00000630796.2:ENST00000450267.5:ENST00000630833.2:ENST00000431674.5:ENST00000422066.5:ENST00000443315.5:ENST00000627825.2:ENST00000427349.5:ENST00000413084.5:ENST00000637137.1:ENST00000491623.2:ENST00000637544.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	34	2	1.89621	2.061055	2.2259	0.0662381	0.0488044	0.181924	0.173377
chr9	124738944	124739044	4348892	0	-	0.4	(0.378,0.408]	chr9	399261	52	INTRON	INTRON	NR6A1	ENSG00000148200.17	ENST00000487099.7:ENST00000373584.7:ENST00000416460.6:ENST00000344523.8	protein_coding	protein_coding	protein_coding	protein_coding	3	34	2	1.89621	2.061055	2.2259	0.0662381	0.0488044	0.181924	0.173377
chr1	31014899	31014999	412385	0	-	0.39	(0.378,0.408]	chr1	49725	74	INTRON	INTRON	PUM1	ENSG00000134644.16	ENST00000426105.7:ENST00000373747.7:ENST00000257075.9:ENST00000424085.6:ENST00000525843.5:ENST00000440538.6:ENST00000373741.8:ENST00000373742.6:ENST00000526215.5:ENST00000525948.5:ENST00000480602.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	41	2	1.65821	2.06097	2.46373	0.0506302	0.0382831	0.17547	0.141795
chr7	74187410	74187510	3332358	0	+	0.39	(0.378,0.408]	chr7	310038	4	SS3_PROX	SS3_PROX:INTRON	EIF4H	ENSG00000106682.16	ENST00000678438.1:ENST00000489484.5:ENST00000677998.1:ENST00000495187.2:ENST00000265753.13:ENST00000353999.6:ENST00000677570.1:ENST00000677681.1:ENST00000678815.1:ENST00000679266.1:ENST00000679287.1:ENST00000479338.5:ENST00000678341.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	41	2	1.65821	2.06097	2.46373	0.0506302	0.0382831	0.17547	0.141795
chr2	27592983	27593082	718033	0	+	0.393939	(0.378,0.408]	chr2	83352	89	INTRON	INTRON	ZNF512	ENSG00000243943.10	ENST00000413371.6:ENST00000416005.6:ENST00000556601.5:ENST00000379717.5:ENST00000355467.6:ENST00000494548.1:ENST00000461705.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	12	127	2	2.00577	2.060925	2.11608	0.00467795	0.00279033	0.0600108	0.0488769
chr14	101884850	101884948	5819748	0	+	0.530612	(0.515,0.57]	chr14	551895	9	INTRON	INTRON	PPP2R5C	ENSG00000078304.20	ENST00000694906.1:ENST00000422945.6:ENST00000328724.9:ENST00000350249.7:ENST00000557621.5:ENST00000334743.9:ENST00000445439.7:ENST00000557095.5:ENST00000554137.5:ENST00000556218.5:ENST00000557534.1:ENST00000557716.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	35	2	1.88259	2.06087	2.23915	0.0596178	0.0251849	0.16883600000000001	0.133519
chr11	47808195	47808295	4951750	0	-	0.54	(0.515,0.57]	chr11	464555	4	SS5_PROX	SS5_PROX:INTRON	NUP160	ENSG00000030066.14	ENST00000694866.1:ENST00000378460.7:ENST00000530326.5:ENST00000528071.5	protein_coding	protein_coding	protein_coding	protein_coding	10	87	2	2.05789	2.0607800000000003	2.06367	0.00786509	0.00266204	0.076155	0.0476185
chr3	33677987	33678087	1653601	0	-	0.36	(0.35,0.378]	chr3	169658	141	INTRON	INTRON	CLASP2	ENSG00000163539.18	ENST00000399362.8:ENST00000682230.1:ENST00000468888.6:ENST00000359576.9	protein_coding	protein_coding	protein_coding	protein_coding	4	43	2	1.65083	2.06074	2.47065	0.0521072	0.0386172	0.177022	0.142656
chr4	39713862	39713961	1953149	0	+	0.383838	(0.378,0.408]	chr4	195630	151	INTRON	INTRON	UBE2K	ENSG00000078140.14	ENST00000510934.5:ENST00000261427.10:ENST00000438068.6:ENST00000513231.5:ENST00000503368.5:ENST00000445950.2:ENST00000510719.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	77	2	1.84831	2.0606999999999998	2.27309	0.0172621	0.00769587	0.111749	0.0754631
chr2	28932039	28932139	725565	0	+	0.39	(0.378,0.408]	chr2	83854	15	INTRON	INTRON	WDR43	ENSG00000163811.12	ENST00000407426.8:ENST00000466067.1:ENST00000446643.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	64	2	1.5653	2.060685	2.55607	0.043739	0.00704647	0.162255	0.0718189
chr3	182845157	182845257	1578400	0	+	0.53	(0.515,0.57]	chr3	162740	3	SS3_PROX	SS3_PROX:INTRON	ATP11B	ENSG00000058063.16	ENST00000323116.10:ENST00000482794.1:ENST00000498086.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	45	2	1.59629	2.060665	2.52504	0.029342	0.0274344	0.136554	0.128055
chr2	135063879	135063979	872785	0	+	0.37	(0.35,0.378]	chr2	97740	12	INTRON	INTRON	RAB3GAP1	ENSG00000115839.19	ENST00000539493.3:ENST00000688088.1:ENST00000693554.1:ENST00000690785.1:ENST00000689880.1:ENST00000264158.13:ENST00000690208.1:ENST00000691478.1:ENST00000686114.1:ENST00000685967.1:ENST00000442034.5:ENST00000687199.1:ENST00000691339.1:ENST00000688182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	87	2	1.38936	2.0605	2.73164	0.0361852	0.00387645	0.152746	0.0543578
chr1	224946785	224946884	322523	0	+	0.292929	(0.28,0.32]	chr1	37105	166	INTRON	INTRON	DNAH14	ENSG00000185842.16	ENST00000445597.6:ENST00000430092.5:ENST00000366850.7:ENST00000400952.7:ENST00000682510.1:ENST00000366849.5:ENST00000498360.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	82	2	1.86798	2.06048	2.25298	0.0335733	0.00791652	0.134145	0.0797304
chr16	24767845	24767945	6329597	0	+	0.32	(0.28,0.32]	chr16	605945	91	INTRON	INTRON	TNRC6A	ENSG00000090905.19	ENST00000395799.8:ENST00000315183.11:ENST00000562829.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	82	2	1.86798	2.06048	2.25298	0.0335733	0.00791652	0.134145	0.0797304
chr7	156877873	156877973	3687865	0	-	0.28	[0,0.28]	chr7	342096	406	INTRON	INTRON	LMBR1	ENSG00000105983.23	ENST00000353442.10:ENST00000415428.5:ENST00000454132.5:ENST00000434503.5:ENST00000430278.5:ENST00000434278.5:ENST00000444719.5:ENST00000461469.5:ENST00000414218.1:ENST00000434453.1:ENST00000498034.5:ENST00000433968.5:ENST00000485985.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	12	160	2	1.52326	2.060455	2.59765	0.0196387	0.00365944	0.120063	0.0535094
chr22	49616044	49616144	7602241	0	-	0.46	(0.44,0.476]	chr22	778570	204	INTRON	INTRON	MIR3667HG	ENSG00000188511.13	ENST00000414287.5:ENST00000416411.1:ENST00000689875.1	lncRNA	lncRNA	lncRNA	lncRNA	7	75	2	1.7651	2.06043	2.35576	0.039388	0.00208591	0.143072	0.0424672
chr9	131127928	131128025	4215641	0	+	0.43299	(0.408,0.44]	chr9	386506	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NUP214	ENSG00000126883.19	ENST00000695497.1:ENST00000695498.1:ENST00000695496.1:ENST00000695495.1:ENST00000695494.1:ENST00000695493.1:ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000525561.2:ENST00000651022.1:ENST00000651639.1:ENST00000531584.1:ENST00000695499.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	112	2	1.73272	2.06037	2.38802	0.0113502	0.00178825	0.0886611	0.0392749
chr16	89483744	89483844	6543534	0	-	0.45	(0.44,0.476]	chr16	634281	521	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	13	114	2	1.50172	2.06034	2.61896	0.0139907	0.0017827	0.102514	0.0379201
chr1	55207097	55207197	465822	0	-	0.41	(0.408,0.44]	chr1	56290	286	INTRON	INTRON	USP24	ENSG00000162402.14	ENST00000294383.7	protein_coding	protein_coding	protein_coding	protein_coding	5	54	2	1.94273	2.0602850000000004	2.17784	0.0456237	0.00916282	0.149888	0.0855292
chr1	54384481	54384581	463542	0	-	0.43	(0.408,0.44]	chr1	55784	278	INTRON	INTRON	SSBP3	ENSG00000157216.16	ENST00000610401.5:ENST00000357475.9:ENST00000371319.8:ENST00000417664.7:ENST00000533946.6:ENST00000371320.8:ENST00000525990.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	33	2	1.93243	2.06025	2.18807	0.0708044	0.0441194	0.184528	0.162255
chr17	46567270	46567370	6786608	0	-	0.41	(0.408,0.44]	chr17	669366	81	INTRON	INTRON	ARL17A	ENSG00000185829.18	ENST00000445552.6:ENST00000622488.6:ENST00000329240.10:ENST00000573185.5:ENST00000570550.5:ENST00000336125.6	protein_coding	protein_coding	protein_coding	protein_coding	3	33	2	1.93243	2.06025	2.18807	0.0708044	0.0441194	0.184528	0.162255
chr17	59761180	59761279	6642934	0	+	0.424242	(0.408,0.44]	chr17	648739	219	INTRON	INTRON	VMP1	ENSG00000062716.13	ENST00000593168.5:ENST00000586245.5:ENST00000585847.5:ENST00000262291.9:ENST00000587945.1:ENST00000589823.6:ENST00000592619.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	33	2	1.93243	2.06025	2.18807	0.0708044	0.0441194	0.184528	0.162255
chr18	58253941	58254040	6917313	0	+	0.424242	(0.408,0.44]	chr18	684519	20	EXON_MRNA	EXON_MRNA:INTRON	NEDD4L	ENSG00000049759.20	ENST00000400345.8:ENST00000356462.10:ENST00000674845.1:ENST00000589054.5:ENST00000676024.1:ENST00000382850.8:ENST00000256830.13:ENST00000676223.1:ENST00000675147.1:ENST00000592846.5:ENST00000675801.1:ENST00000674613.1:ENST00000456986.5:ENST00000675502.1:ENST00000675137.1:ENST00000357895.9:ENST00000435432.6:ENST00000586263.5:ENST00000456173.6:ENST00000676251.1:ENST00000676226.1:ENST00000675865.1:ENST00000588494.5:ENST00000675221.1:ENST00000588066.5:ENST00000431212.6:ENST00000586268.5:ENST00000587190.5:ENST00000585323.5:ENST00000587634.6:ENST00000674636.1:ENST00000674856.1:ENST00000675434.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	33	2	1.93243	2.06025	2.18807	0.0708044	0.0441194	0.184528	0.162255
chr2	63989806	63989905	1139717	0	-	0.434343	(0.408,0.44]	chr2	122046	54	INTRON	INTRON	VPS54	ENSG00000143952.20	ENST00000409558.8:ENST00000272322.9	protein_coding	protein_coding	protein_coding	protein_coding	3	33	2	1.93243	2.06025	2.18807	0.0708044	0.0441194	0.184528	0.162255
chr2	156252631	156252727	1248959	0	-	0.4375	(0.408,0.44]	chr2	132439	1	INTRON	INTRON	LINC01876	ENSG00000226383.7	ENST00000635799.1:ENST00000662073.1:ENST00000659502.1:ENST00000428651.2:ENST00000661513.1:ENST00000657334.1:ENST00000638047.1:ENST00000637554.1:ENST00000636956.1:ENST00000637665.1:ENST00000637476.1:ENST00000637324.1	lncRNA	lncRNA	lncRNA	lncRNA	3	33	2	1.93243	2.06025	2.18807	0.0708044	0.0441194	0.184528	0.162255
chr8	140745663	140745763	4077482	0	-	0.44	(0.408,0.44]	chr8	370408	5	INTRON	INTRON	PTK2	ENSG00000169398.20	ENST00000696786.1:ENST00000522684.5:ENST00000395218.3:ENST00000519654.5:ENST00000521059.5:ENST00000517887.5:ENST00000519465.5:ENST00000519993.5:ENST00000340930.7:ENST00000523539.5:ENST00000519419.5:ENST00000524202.5:ENST00000521986.5:ENST00000521250.5:ENST00000521981.5:ENST00000521029.5:ENST00000520151.5:ENST00000523670.5:ENST00000519024.5:ENST00000523746.5:ENST00000510126.2:ENST00000523474.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	33	2	1.93243	2.06025	2.18807	0.0708044	0.0441194	0.184528	0.162255
chr9	36446756	36446856	4250311	0	-	0.43	(0.408,0.44]	chr9	391466	217	INTRON	INTRON	RNF38	ENSG00000137075.18	ENST00000488058.1	protein_coding	processed_transcript	protein_coding	processed_transcript	3	33	2	1.93243	2.06025	2.18807	0.0708044	0.0441194	0.184528	0.162255
chr10	45874092	45874192	4607672	0	-	0.44	(0.408,0.44]	chr10	424444	106	INTRON	INTRON	PARGP1	ENSG00000239883.9	ENST00000440803.7:ENST00000688192.1:ENST00000686367.1:ENST00000693310.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	9	80	2	1.39837	2.060225	2.72208	0.0342165	0.00364449	0.146942	0.0535094
chr7	129486718	129486817	3412103	0	+	0.282828	(0.28,0.32]	chr7	319005	10	UTR3	UTR3:EXON_MRNA	STRIP2	ENSG00000128578.10	ENST00000249344.7	protein_coding	protein_coding	protein_coding	protein_coding	13	172	2	1.85392	2.06011	2.2663	0.00948796	0.00146266	0.0817766	0.0350367
chr6	31148004	31148104	3078317	0	-	0.37	(0.35,0.378]	chr6	286606	2	SS5_PROX	SS5_PROX:INTRON	CCHCR1	ENSG00000204536.15	ENST00000376266.9:ENST00000396268.8:ENST00000396263.6:ENST00000652427.1:ENST00000652535.1:ENST00000451521.6:ENST00000509552.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	37	2	1.81767	2.06008	2.30249	0.0640429	0.0519726	0.177882	0.176696
chr12	51165109	51165209	5325795	0	-	0.48	(0.476,0.515]	chr12	507890	396	INTRON	INTRON	TFCP2	ENSG00000135457.11	ENST00000257915.10:ENST00000685804.1:ENST00000549867.5:ENST00000548115.5:ENST00000548108.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	53	2	1.80284	2.06005	2.31726	0.033161	0.015077	0.145899	0.0994339
chr15	22790322	22790422	5976113	0	+	0.48	(0.476,0.515]	chr15	568352	31	INTRON	INTRON	NIPA1	ENSG00000170113.16	ENST00000437912.6:ENST00000561183.5:ENST00000560069.5:ENST00000337435.9:ENST00000560105.1:ENST00000559448.5:ENST00000557930.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	53	2	1.80284	2.06005	2.31726	0.033161	0.015077	0.145899	0.0994339
chr2	69919762	69919860	805554	0	+	0.367347	(0.35,0.378]	chr2	89914	32	INTRON	INTRON	MXD1	ENSG00000059728.11	ENST00000435990.5:ENST00000540449.5:ENST00000264444.7:ENST00000409442.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	75	2	1.88357	2.06004	2.23651	0.020879	0.0100866	0.111766	0.0884696
chr3	33611104	33611203	1652920	0	-	0.343434	(0.32,0.35]	chr3	169605	21	INTRON	INTRON	CLASP2	ENSG00000163539.18	ENST00000399362.8:ENST00000682230.1:ENST00000468888.6:ENST00000359576.9:ENST00000650653.1:ENST00000480013.6:ENST00000461133.8:ENST00000635664.1:ENST00000313350.10:ENST00000487200.5:ENST00000333778.10	protein_coding	protein_coding	protein_coding	protein_coding	3	38	2	1.81328	2.060005	2.30673	0.0615716	0.0584434	0.193423	0.167723
chr1	47250437	47250536	445454	0	-	0.313131	(0.28,0.32]	chr1	53977	4	UTR3	UTR3:EXON_MRNA	STIL	ENSG00000123473.17	ENST00000360380.7:ENST00000371877.8:ENST00000337817.10:ENST00000682940.1:ENST00000683977.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	102	2	1.32455	2.05998	2.79541	0.0474504	0.00376367	0.169423	0.0539127
chr6	18242109	18242209	3069020	0	-	0.58	(0.57,1]	chr6	285184	42	INTRON	INTRON	DEK	ENSG00000124795.17	ENST00000652689.1:ENST00000652292.1:ENST00000651624.1:ENST00000515770.2:ENST00000651992.1:ENST00000507591.2:ENST00000505224.5:ENST00000244776.11:ENST00000652576.1:ENST00000512145.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	38	2	1.79978	2.059975	2.32017	0.0199509	0.00488159	0.109608	0.0640618
chr7	75384694	75384790	3337917	0	+	0.40625	(0.378,0.408]	chr7	310755	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	STAG3L1	ENSG00000205583.14	ENST00000619870.4:ENST00000404291.3:ENST00000487154.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	7	75	2	1.76455	2.05991	2.35527	0.0180091	0.0121511	0.106756	0.0963966
chr22	19348071	19348171	7553564	0	-	0.52	(0.515,0.57]	chr22	772184	162	INTRON	INTRON	HIRA	ENSG00000100084.14	ENST00000263208.5:ENST00000340170.8	protein_coding	protein_coding	protein_coding	protein_coding	4	38	2	1.79136	2.05986	2.32836	0.0638444	0.0126662	0.177811	0.0982897
chr4	78788302	78788402	1981504	0	+	0.32	(0.28,0.32]	chr4	198463	112	INTRON	INTRON	BMP2K	ENSG00000138756.19	ENST00000389010.7:ENST00000502613.3:ENST00000502871.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	105	2	1.42366	2.05984	2.69602	0.0587737	0.00126382	0.167915	0.0329641
chr5	65928205	65928305	2370860	0	+	0.35	(0.32,0.35]	chr5	228472	10	INTRON	INTRON	ERBIN	ENSG00000112851.15	ENST00000380943.6:ENST00000507490.1:ENST00000416865.6:ENST00000380935.5:ENST00000284037.10:ENST00000380938.6:ENST00000511297.5:ENST00000506030.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	14	163	2	1.34415	2.059825	2.7755	0.0378772	1.43924e-4	0.141255	0.0104241
chr5	79646079	79646176	2399074	0	+	0.350515	(0.35,0.378]	chr5	231729	5	INTRON	INTRON	TENT2	ENSG00000164329.14	ENST00000423041.6:ENST00000504233.5:ENST00000453514.6:ENST00000428308.6:ENST00000296783.7:ENST00000509227.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	75	2	1.38772	2.05968	2.73164	0.0555481	0.00387645	0.18407	0.0543578
chr11	68612535	68612635	4818889	0	+	0.37	(0.35,0.378]	chr11	449075	1	SS3_PROX	SS3_PROX:INTRON	PPP6R3	ENSG00000110075.15	ENST00000534534.5:ENST00000524845.5:ENST00000393800.7:ENST00000265637.8:ENST00000524904.5:ENST00000393801.7:ENST00000265636.9:ENST00000529710.5:ENST00000527403.6:ENST00000534190.5:ENST00000526307.5:ENST00000526593.1:ENST00000525152.1:ENST00000530734.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	70	2	1.87726	2.05961	2.24196	0.0297629	0.00744693	0.12908	0.0772645
chr2	71129416	71129516	1154634	0	-	0.36	(0.35,0.378]	chr2	123393	3	SS5_PROX	SS5_PROX:INTRON	MCEE	ENSG00000124370.11	ENST00000244217.6:ENST00000486135.1:ENST00000494660.6	protein_coding	protein_coding	protein_coding	protein_coding	6	70	2	1.87726	2.05961	2.24196	0.0297629	0.00744693	0.12908	0.0772645
chr3	129315064	129315162	1815334	0	-	0.602041	(0.57,1]	chr3	182488	4	UTR3	UTR3:EXON_MRNA	H1-10	ENSG00000184897.6	ENST00000333762.6	protein_coding	protein_coding	protein_coding	protein_coding	26	133	2	1.69709	2.059605	2.42212	0.00199782	3.3696e-5	0.0412555	0.00488974
chr1	28917371	28917471	58984	0	+	0.47	(0.44,0.476]	chr1	7621	22	INTRON	INTRON	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000647918.1:ENST00000646800.1:ENST00000644342.1:ENST00000646189.1:ENST00000482464.6:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000646260.1:ENST00000373798.5:ENST00000644600.1:ENST00000649674.1:ENST00000643173.1:ENST00000343067.9:ENST00000644780.1:ENST00000650265.1:ENST00000648181.1:ENST00000643604.1:ENST00000648891.1:ENST00000373797.2:ENST00000349460.9:ENST00000645184.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	53	2	1.92837	2.059575	2.19078	0.0226089	0.0222222	0.124303	0.117489
chr10	17698432	17698529	4399817	0	+	0.350515	(0.35,0.378]	chr10	406198	12	INTRON	INTRON	STAM	ENSG00000136738.15	ENST00000377524.8:ENST00000377500.1:ENST00000494250.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	59	2	1.87717	2.059565	2.24196	0.0555068	0.00744693	0.165463	0.0772645
chr5	154774078	154774178	2527185	0	+	0.53	(0.515,0.57]	chr5	241610	162	INTRON	INTRON	LARP1	ENSG00000155506.19	ENST00000687700.1:ENST00000336314.9:ENST00000690816.1:ENST00000518297.6:ENST00000517616.5:ENST00000518892.1:ENST00000521577.1:ENST00000519931.5:ENST00000524248.5:ENST00000685946.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	38	2	2.03361	2.05954	2.08547	0.0325854	0.0289426	0.145164	0.1274
chr8	127801353	127801453	3860110	0	+	0.52	(0.515,0.57]	chr8	355380	49	INTRON	INTRON	PVT1	ENSG00000249859.13	ENST00000667305.1:ENST00000690350.1:ENST00000653522.1:ENST00000664214.1:ENST00000664139.1:ENST00000661830.1:ENST00000657289.1:ENST00000504719.7:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000656880.1:ENST00000660200.1:ENST00000669132.1:ENST00000657211.1:ENST00000653845.1:ENST00000517525.2:ENST00000665856.1:ENST00000651587.1:ENST00000692980.1:ENST00000666353.1:ENST00000657183.1:ENST00000654324.1:ENST00000658556.1:ENST00000657693.1:ENST00000666080.1:ENST00000667539.1:ENST00000521951.1:ENST00000524165.6:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000664293.1:ENST00000657297.1:ENST00000662410.1:ENST00000670795.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000654091.1:ENST00000523328.6:ENST00000657356.1:ENST00000523427.2:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000662061.1:ENST00000667204.1:ENST00000656491.1:ENST00000667714.1:ENST00000654105.1:ENST00000665721.1:ENST00000518528.2:ENST00000669416.1:ENST00000660438.1:ENST00000661160.1:ENST00000659326.1:ENST00000665246.1:ENST00000657384.1:ENST00000666842.1:ENST00000517790.2:ENST00000522963.6:ENST00000654369.1:ENST00000661625.1:ENST00000657596.1:ENST00000664995.1:ENST00000656532.1:ENST00000656168.1:ENST00000661988.1:ENST00000657517.1:ENST00000670714.1:ENST00000669951.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000656693.1:ENST00000668123.1:ENST00000666776.1:ENST00000664299.1:ENST00000669272.1:ENST00000659912.1:ENST00000670532.1:ENST00000660896.1:ENST00000667149.1:ENST00000656396.1:ENST00000523068.2	lncRNA	lncRNA	lncRNA	lncRNA	4	38	2	2.03361	2.05954	2.08547	0.0325854	0.0289426	0.145164	0.1274
chr1	96811418	96811517	168854	0	+	0.525253	(0.515,0.57]	chr1	18263	41	INTRON	INTRON	PTBP2	ENSG00000117569.19	ENST00000482253.5:ENST00000675735.1:ENST00000609116.5:ENST00000674951.1:ENST00000675080.1:ENST00000426398.3:ENST00000370197.5:ENST00000370198.5:ENST00000476419.5:ENST00000676292.1:ENST00000676096.1:ENST00000675365.1:ENST00000674579.1:ENST00000675401.1:ENST00000459735.5:ENST00000476783.5:ENST00000492905.5:ENST00000462433.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	63	2	1.79385	2.05953	2.3252100000000002	0.0201222	0.00525266	0.121243	0.0633615
chr22	21784561	21784661	7560549	0	-	0.58	(0.57,1]	chr22	773360	112	INTRON	INTRON	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	7	38	2	2.02689	2.0594799999999998	2.09207	0.0121228	0.00839052	0.090965	0.0823837
chr17	64519220	64519320	6662022	0	+	0.58	(0.57,1]	chr17	650213	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	CEP95	ENSG00000258890.8	ENST00000579860.5:ENST00000580188.1:ENST00000556440.7:ENST00000553956.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	48	2	1.83525	2.059475	2.2837	0.0110377	0.00256797	0.0873897	0.0466761
chr7	148824756	148824856	3670157	0	-	0.45	(0.44,0.476]	chr7	340580	40	INTRON	INTRON	EZH2	ENSG00000106462.12	ENST00000683292.1:ENST00000320356.7:ENST00000492143.5:ENST00000478654.5:ENST00000350995.6:ENST00000460911.5:ENST00000683744.1:ENST00000682317.1:ENST00000682263.1:ENST00000684300.1:ENST00000476773.5:ENST00000483967.5:ENST00000498186.5:ENST00000483012.1:ENST00000682401.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	23	228	2	2.05142	2.05947	2.06752	0.00171303	4.15455e-4	0.0374474	0.0182269
chr22	16787103	16787202	7546270	0	-	0.292929	(0.28,0.32]	chr22	771315	23	INTRON	INTRON	XKR3	ENSG00000172967.8	ENST00000331428.5:ENST00000684488.1	protein_coding	protein_coding	protein_coding	protein_coding	8	97	2	1.41053	2.0594200000000003	2.70831	0.0501096	0.00378444	0.156383	0.0562562
chr7	23431602	23431702	3503278	0	-	0.4	(0.378,0.408]	chr7	326910	4	INTRON	INTRON	IGF2BP3	ENSG00000136231.14	ENST00000258729.8:ENST00000421467.6:ENST00000468263.5:ENST00000491719.5:ENST00000476938.5:ENST00000468005.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	108	2	1.82032	2.05942	2.29852	0.01477	0.00152853	0.0984422	0.0361457
chr4	126660176	126660276	2237311	0	-	0.28	[0,0.28]	chr4	219023	1947	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	20	291	2	2.02425	2.0594	2.09455	0.00479282	0.00134335	0.0602209	0.0337303
chr10	50459940	50460010	4619046	0	-	0.314286	(0.28,0.32]	chr10	425433	1	EXON_LNCRNA	EXON_LNCRNA:INTRON	SGMS1	ENSG00000198964.14	ENST00000429490.5:ENST00000361781.7:ENST00000619438.4:ENST00000609445.5:ENST00000498514.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	50	2	1.6633	2.059375	2.45545	0.0522231	0.0438092	0.177274	0.14901
chr2	26052977	26053077	713288	0	+	0.32	(0.28,0.32]	chr2	82440	103	INTRON	INTRON	RAB10	ENSG00000084733.11	ENST00000264710.5:ENST00000495146.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	50	2	1.6633	2.059375	2.45545	0.0522231	0.0438092	0.177274	0.14901
chr5	54369967	54370066	2354322	0	+	0.282828	(0.28,0.32]	chr5	227061	293	INTRON	INTRON	LINC01033	ENSG00000249069.8	ENST00000665899.1:ENST00000653566.1:ENST00000655801.1:ENST00000654906.1:ENST00000667636.1:ENST00000665869.1:ENST00000664079.1:ENST00000659703.1:ENST00000662351.1:ENST00000523194.7:ENST00000665795.1:ENST00000667992.1:ENST00000662022.1:ENST00000657771.1:ENST00000517934.1	lncRNA	lncRNA	lncRNA	lncRNA	4	50	2	1.6633	2.059375	2.45545	0.0522231	0.0438092	0.177274	0.14901
chr7	121074483	121074583	3394501	0	+	0.32	(0.28,0.32]	chr7	317706	98	INTRON	INTRON	CPED1	ENSG00000106034.18	ENST00000310396.10:ENST00000428526.5:ENST00000450913.6:ENST00000520801.5:ENST00000423795.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	50	2	1.6633	2.059375	2.45545	0.0522231	0.0438092	0.177274	0.14901
chr1	17435548	17435647	384945	0	-	0.606061	(0.57,1]	chr1	45493	60	INTRON	INTRON	RCC2	ENSG00000179051.14	ENST00000375436.9:ENST00000375433.3	protein_coding	protein_coding	protein_coding	protein_coding	5	28	2	1.83769	2.05936	2.28103	0.0297587	0.0151554	0.12908	0.108535
chr6	34333165	34333265	3084178	0	-	0.33	(0.32,0.35]	chr6	288627	371	INTRON	INTRON	NUDT3:RPS10-NUDT3	ENSG00000272325.2:ENSG00000270800.3	ENST00000607016.2:ENST00000639725.1:ENST00000639877.1:ENST00000605528.2	protein_coding	protein_coding	protein_coding	protein_coding	5	63	2	1.81388	2.05932	2.30476	0.0371014	0.0151817	0.139201	0.108535
chr12	68636543	68636643	5161463	0	+	0.42	(0.408,0.44]	chr12	488585	113	INTRON	INTRON	RAP1B	ENSG00000127314.18	ENST00000460800.5:ENST00000393436.9:ENST00000250559.14:ENST00000425247.6:ENST00000501412.2:ENST00000450214.6:ENST00000463493.5:ENST00000537460.5:ENST00000341355.9:ENST00000538283.5:ENST00000541167.5:ENST00000422358.6:ENST00000489473.6:ENST00000545270.5:ENST00000538980.5:ENST00000543393.5:ENST00000542018.5:ENST00000540209.5:ENST00000378985.7:ENST00000453560.6:ENST00000534899.5:ENST00000542145.5:ENST00000539091.5:ENST00000535492.5:ENST00000540781.5:ENST00000485252.6:ENST00000538877.5:ENST00000541386.5:ENST00000543697.5:ENST00000545720.6:ENST00000541216.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	14	106	2	1.29397	2.05929	2.82461	0.0256769	0.00241819	0.133676	0.0442901
chr16	16504917	16505017	6310911	0	+	0.47	(0.44,0.476]	chr16	604098	49	INTRON	INTRON	ENSG00000260126	ENSG00000260126.2	ENST00000567465.2	lncRNA	lncRNA	lncRNA	lncRNA	9	96	2	1.70763	2.059285	2.41094	0.0190437	0.00205841	0.118994	0.0409869
chr19	2272149	2272246	6997101	0	+	0.505155	(0.476,0.515]	chr19	693662	3	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	OAZ1	ENSG00000104904.12	ENST00000590943.6:ENST00000592787.2:ENST00000602676.6:ENST00000581150.6:ENST00000582888.8:ENST00000593012.1:ENST00000588673.3:ENST00000586054.2:ENST00000589361.2:ENST00000592727.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	105	2	1.78917	2.05925	2.32933	0.022887	7.73927e-4	0.118056	0.0256083
chr7	139103433	139103532	3656358	0	-	0.40404	(0.378,0.408]	chr7	339450	133	INTRON	INTRON	ZC3HAV1	ENSG00000105939.14	ENST00000242351.10:ENST00000464606.5:ENST00000680309.1:ENST00000471652.1	protein_coding	protein_coding	protein_coding	protein_coding	4	42	2	1.89251	2.059205	2.2259	0.0662381	0.0251428	0.181924	0.133404
chr13	113519016	113519115	5549451	0	+	0.434343	(0.408,0.44]	chr13	530305	82	INTRON	INTRON	TMCO3	ENSG00000150403.18	ENST00000434316.7:ENST00000375391.5:ENST00000474393.5:ENST00000462877.5	protein_coding	protein_coding	protein_coding	protein_coding	5	46	2	1.60344	2.05918	2.51492	0.0387506	0.0329839	0.160156	0.133816
chr12	56684283	56684383	5336041	0	-	0.36	(0.35,0.378]	chr12	510192	109	INTRON	INTRON	PTGES3	ENSG00000110958.16	ENST00000537473.2:ENST00000614328.4:ENST00000262033.11:ENST00000414274.7:ENST00000436399.6:ENST00000448157.6:ENST00000456859.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	49	2	1.9755	2.05907	2.14264	0.0398617	0.0274795	0.161534	0.123904
chr14	39182541	39182638	5700157	0	+	0.360825	(0.35,0.378]	chr14	541911	8	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	PNN	ENSG00000100941.9	ENST00000216832.9:ENST00000557680.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	49	2	1.9755	2.05907	2.14264	0.0398617	0.0274795	0.161534	0.123904
chr16	222245	222345	6426118	0	-	0.36	(0.35,0.378]	chr16	617444	11	INTRON	INTRON	LUC7L	ENSG00000007392.17	ENST00000337351.8:ENST00000426094.5:ENST00000397783.5:ENST00000629543.2:ENST00000490762.5:ENST00000293872.13:ENST00000419516.5:ENST00000397780.5:ENST00000418978.5:ENST00000430864.5:ENST00000443357.5:ENST00000494366.5:ENST00000469109.1:ENST00000428363.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	88	2	1.63191	2.05907	2.48623	0.0149226	0.00938784	0.107378	0.0817766
chr1	235271545	235271645	663296	0	-	0.47	(0.44,0.476]	chr1	78552	104	INTRON	INTRON	ARID4B	ENSG00000054267.22	ENST00000349213.7:ENST00000366603.6:ENST00000264183.9:ENST00000421364.5:ENST00000491632.5:ENST00000418304.1:ENST00000466653.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	79	2	2.03524	2.059005	2.08277	0.0309998	0.00336403	0.13151	0.053249
chr6	158570821	158570921	3021706	0	+	0.37	(0.35,0.378]	chr6	281792	102	INTRON	INTRON	TMEM181	ENSG00000146433.10	ENST00000367090.4:ENST00000684151.1	protein_coding	protein_coding	protein_coding	protein_coding	13	146	2	1.82204	2.058965	2.29589	0.00874368	0.0010079	0.0788605	0.0292743
chr1	153765363	153765463	227273	0	+	0.48	(0.476,0.515]	chr1	26113	3	SS5_PROX	SS5_PROX:INTRON	INTS3	ENSG00000143624.14	ENST00000318967.7:ENST00000435409.6:ENST00000481797.5:ENST00000512605.4:ENST00000476843.5:ENST00000503133.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	41	2	1.63838	2.058935	2.47949	0.0555021	0.0326974	0.165463	0.145164
chr21	6327361	6327460	7364847	0	+	0.363636	(0.35,0.378]	chr21	751664	29	INTRON	INTRON	ENSG00000278903	ENSG00000278903.4	ENST00000688458.1:ENST00000689306.1:ENST00000692898.1:ENST00000624576.3:ENST00000623738.3:ENST00000692237.1:ENST00000692046.1:ENST00000689354.1:ENST00000624165.1	lncRNA	lncRNA	lncRNA	lncRNA	16	179	2	1.88901	2.058925	2.22884	0.00306495	0.0014879	0.0509893	0.035
chr12	54281295	54281352	5143375	0	+	0.385965	(0.378,0.408]	chr12	485531	1	EXON_MRNA	EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HNRNPA1	ENSG00000135486.19	ENST00000546500.5:ENST00000677385.1:ENST00000677210.1:ENST00000677375.1:ENST00000677249.1:ENST00000676725.1:ENST00000678418.1:ENST00000550482.2:ENST00000340913.11:ENST00000679101.1:ENST00000547566.5:ENST00000547708.5:ENST00000679228.1:ENST00000547870.2:ENST00000551702.5:ENST00000678365.1:ENST00000330752.12:ENST00000676794.1:ENST00000547276.5:ENST00000678919.1:ENST00000678690.1:ENST00000677220.1:ENST00000678077.1:ENST00000548688.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	114	2	1.83778	2.058865	2.27995	0.00609624	0.00388691	0.0706177	0.0544347
chr2	27596370	27596470	718067	0	+	0.45	(0.44,0.476]	chr2	83352	123	INTRON	INTRON	ZNF512	ENSG00000243943.10	ENST00000413371.6:ENST00000416005.6:ENST00000556601.5:ENST00000379717.5:ENST00000355467.6:ENST00000494548.1:ENST00000461705.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	84	2	1.76195	2.058855	2.35576	0.0252608	0.00208591	0.12011	0.0424672
chr9	92254332	92254430	4286929	0	-	0.265306	[0,0.28]	chr9	394155	10	EXON_MRNA	EXON_MRNA:INTRON	IARS1	ENSG00000196305.19	ENST00000375643.7:ENST00000443024.7:ENST00000447699.7:ENST00000683537.1:ENST00000684726.1:ENST00000683192.1:ENST00000683565.1:ENST00000682756.1:ENST00000684542.1:ENST00000683793.1:ENST00000683817.1:ENST00000682141.1:ENST00000682893.1:ENST00000684557.1:ENST00000498025.2:ENST00000682156.1:ENST00000627121.3:ENST00000683469.1:ENST00000683495.1:ENST00000682578.1:ENST00000682533.1:ENST00000472894.2:ENST00000684757.1:ENST00000684445.1:ENST00000683376.1:ENST00000683679.1:ENST00000683119.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	120	2	1.9362	2.058815	2.18143	0.0149482	0.0103279	0.0994282	0.0894692
chr5	54283293	54283393	2620645	0	-	0.31	(0.28,0.32]	chr5	248860	1110	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2:ENST00000505630.5:ENST00000505383.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	95	2	1.6789	2.0587999999999997	2.4387	0.017572	0.0126802	0.11319	0.0926667
chr21	33450623	33450720	7440677	0	-	0.195876	[0,0.28]	chr21	759328	20	UTR3	UTR3:EXON_MRNA	TMEM50B	ENSG00000142188.17	ENST00000420455.5:ENST00000542230.7:ENST00000441128.5:ENST00000442441.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	126	2	1.58141	2.058775	2.53614	0.0540605	0.00143852	0.164565	0.034757
chr22	19097475	19097574	7551765	0	-	0.545455	(0.515,0.57]	chr22	771903	76	INTRON	INTRON	DGCR2	ENSG00000070413.20	ENST00000537045.5:ENST00000545799.5:ENST00000263196.12:ENST00000389262.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	23	197	2	1.82484	2.058705	2.29257	0.00163451	2.55338e-4	0.0372421	0.0148225
chr8	129527967	129528067	4060562	0	-	0.37	(0.35,0.378]	chr8	369648	174	INTRON	INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1:ENST00000676273.1:ENST00000667643.1:ENST00000668791.1:ENST00000663716.1:ENST00000663572.1:ENST00000676148.1:ENST00000667962.1:ENST00000674877.1:ENST00000675316.1:ENST00000674656.1:ENST00000446592.7:ENST00000667341.1:ENST00000675186.1:ENST00000652971.1:ENST00000661447.1:ENST00000674863.1:ENST00000675498.1:ENST00000675527.1:ENST00000676108.1:ENST00000657647.1:ENST00000675589.1:ENST00000675913.1:ENST00000675109.1:ENST00000671632.1:ENST00000671311.1:ENST00000676099.1:ENST00000660652.1:ENST00000675522.1:ENST00000675183.1:ENST00000658861.1:ENST00000663991.1:ENST00000675044.1:ENST00000675435.1:ENST00000674639.1:ENST00000676069.1:ENST00000675532.1:ENST00000674762.1:ENST00000523151.6:ENST00000675948.1:ENST00000665364.1:ENST00000657251.1:ENST00000675166.1:ENST00000674883.1:ENST00000675867.1:ENST00000674580.1:ENST00000675393.1:ENST00000520048.1:ENST00000674906.1:ENST00000676030.1:ENST00000670588.1:ENST00000675072.1:ENST00000664936.1:ENST00000652914.1:ENST00000657069.1	lncRNA	lncRNA	lncRNA	lncRNA	9	99	2	1.49914	2.0587	2.61826	0.0306686	0.00206992	0.143385	0.0411801
chr11	114409373	114409471	4868649	0	+	0.489796	(0.476,0.515]	chr11	454364	17	UTR3	UTR3:EXON_MRNA:INTRON	RBM7:ENSG00000255663	ENSG00000076053.12:ENSG00000255663.1	ENST00000540163.5:ENST00000541475.5:ENST00000544582.1:ENST00000375490.10:ENST00000544347.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	61	2	1.63187	2.05869	2.48551	0.037661	0.00756632	0.14058	0.0773151
chr7	77708337	77708437	3343188	0	+	0.44	(0.408,0.44]	chr7	311432	106	INTRON	INTRON	RSBN1L	ENSG00000187257.16	ENST00000334955.13:ENST00000445288.5	protein_coding	protein_coding	protein_coding	protein_coding	7	74	2	1.92319	2.058585	2.19398	0.0247322	0.0043348	0.12011	0.0600652
chr12	53462667	53462767	5143000	0	+	0.39	(0.378,0.408]	chr12	485416	1	SS5_PROX	SS5_PROX:INTRON	PCBP2	ENSG00000197111.16	ENST00000546463.6:ENST00000437231.5:ENST00000447282.5:ENST00000359282.9:ENST00000549863.5:ENST00000359462.9:ENST00000552296.6:ENST00000552819.5:ENST00000455667.7:ENST00000439930.7:ENST00000548933.5:ENST00000546652.6:ENST00000562264.5:ENST00000550585.5:ENST00000547987.2:ENST00000553064.6:ENST00000547859.2:ENST00000549272.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	100	2	1.8121	2.058545	2.30499	0.00683258	0.00683005	0.0748032	0.0713163
chr19	10724841	10724941	7013837	0	+	0.49	(0.476,0.515]	chr19	696920	58	INTRON	INTRON	DNM2	ENSG00000079805.19	ENST00000683738.1:ENST00000682285.1:ENST00000682524.1:ENST00000355667.11:ENST00000389253.9:ENST00000585892.5:ENST00000359692.10:ENST00000408974.8:ENST00000586939.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	64	2	1.7425	2.05849	2.37448	0.0417334	0.00419067	0.147007	0.0591344
chr15	92890706	92890805	6103586	0	+	0.535354	(0.515,0.57]	chr15	581369	20	INTRON	INTRON	CHASERR:ENSG00000279765	ENSG00000272888.8:ENSG00000279765.3	ENST00000653163.1:ENST00000557682.6:ENST00000556895.5:ENST00000554894.5:ENST00000629685.2:ENST00000554133.5:ENST00000630790.1:ENST00000555520.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	9	77	2	2.0031	2.05847	2.11384	0.0118599	0.00357298	0.0899583	0.0548435
chr3	172796835	172796935	1563693	0	+	0.5	(0.476,0.515]	chr3	161807	99	INTRON	INTRON	ECT2	ENSG00000114346.14	ENST00000232458.9:ENST00000540509.5:ENST00000392692.8:ENST00000417960.5:ENST00000441497.6	protein_coding	protein_coding	protein_coding	protein_coding	4	44	2	1.79693	2.05847	2.32001	0.0649782	0.0136217	0.179417	0.101682
chr22	21515440	21515539	7560246	0	-	0.585859	(0.57,1]	chr22	773322	13	INTRON	INTRON	PI4KAP2	ENSG00000183506.17	ENST00000450651.5:ENST00000479693.1:ENST00000476537.1	transcribed_unitary_pseudogene	retained_intron	transcribed_unitary_pseudogene	retained_intron:processed_transcript	8	43	2	1.50772	2.05844	2.60916	0.0388955	0.00119055	0.16071	0.0315806
chr12	22651641	22651741	5095011	0	+	0.33	(0.32,0.35]	chr12	481236	52	INTRON	INTRON	ETNK1	ENSG00000139163.16	ENST00000671733.1:ENST00000266517.9:ENST00000538218.2:ENST00000673496.1:ENST00000673406.1:ENST00000672995.1:ENST00000539974.1:ENST00000673188.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	13	153	2	1.97305	2.058395	2.14374	0.0048878	0.00280388	0.0608499	0.0488779
chr9	72363069	72363169	4266262	0	-	0.37	(0.35,0.378]	chr9	392642	2	SS5_PROX	SS5_PROX:INTRON	ZFAND5	ENSG00000107372.13	ENST00000376962.10:ENST00000237937.7:ENST00000376960.8:ENST00000488164.5:ENST00000343431.6:ENST00000376956.3:ENST00000487330.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	87	2	1.48516	2.058345	2.63153	0.0259086	0.00562761	0.133676	0.0653997
chr16	18883477	18883569	6457669	0	-	0.282609	(0.28,0.32]	chr16	622839	8	INTRON	INTRON	SMG1	ENSG00000157106.18	ENST00000446231.7:ENST00000565324.5:ENST00000561947.5:ENST00000565224.5	protein_coding	protein_coding	protein_coding	protein_coding	6	79	2	2.05458	2.058325	2.06207	0.0381508	0.00876132	0.141764	0.0846118
chr1	61182923	61183023	128401	0	+	0.33	(0.32,0.35]	chr1	14778	500	INTRON	INTRON	NFIA	ENSG00000162599.17	ENST00000371191.5:ENST00000664495.1:ENST00000476646.5:ENST00000407417.7:ENST00000479364.1:ENST00000371189.8:ENST00000670151.1:ENST00000664149.1:ENST00000662015.1:ENST00000403491.8:ENST00000371187.7:ENST00000485903.6:ENST00000371185.6:ENST00000371184.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	38	2	1.88468	2.05825	2.23182	0.068598	0.0515071	0.184298	0.176696
chr17	82562060	82562159	6693030	0	+	0.333333	(0.32,0.35]	chr17	654633	22	INTRON	INTRON	FOXK2	ENSG00000141568.21	ENST00000473637.6:ENST00000335255.10:ENST00000527313.6:ENST00000570585.1:ENST00000531030.5:ENST00000526383.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	38	2	1.88468	2.05825	2.23182	0.068598	0.0515071	0.184298	0.176696
chr6	154763098	154763197	3002114	0	+	0.343434	(0.32,0.35]	chr6	280737	207	INTRON	INTRON	SCAF8	ENSG00000213079.10	ENST00000367186.7:ENST00000417268.3:ENST00000461219.5:ENST00000367178.8:ENST00000464628.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	38	2	1.88468	2.05825	2.23182	0.068598	0.0515071	0.184298	0.176696
chr8	38378816	38378915	3937392	0	-	0.323232	(0.32,0.35]	chr8	360833	146	INTRON	INTRON	NSD3	ENSG00000147548.17	ENST00000317025.13:ENST00000433384.6:ENST00000527502.5:ENST00000316985.7:ENST00000529223.1:ENST00000534155.1:ENST00000534539.1	protein_coding	protein_coding	protein_coding	protein_coding	3	38	2	1.88468	2.05825	2.23182	0.068598	0.0515071	0.184298	0.176696
chr3	172062424	172062524	1559772	0	+	0.49	(0.476,0.515]	chr3	161527	151	INTRON	INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000421757.5:ENST00000469491.5:ENST00000336824.8:ENST00000423424.5:ENST00000416957.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	44	2	2.05154	2.058225	2.06491	0.0336015	0.0304733	0.143385	0.134145
chr4	127950843	127950942	2238424	0	-	0.484848	(0.476,0.515]	chr4	219103	6	INTRON	INTRON	MFSD8	ENSG00000164073.11	ENST00000296468.8:ENST00000641686.2:ENST00000641186.1:ENST00000641774.1:ENST00000641748.1:ENST00000641508.1:ENST00000641690.1:ENST00000641928.1:ENST00000641464.1:ENST00000641092.1:ENST00000641397.1:ENST00000641393.1:ENST00000641025.1:ENST00000641509.1:ENST00000642034.1:ENST00000641178.1:ENST00000641147.1:ENST00000641753.1:ENST00000641434.1:ENST00000641482.1:ENST00000641133.1:ENST00000515130.6:ENST00000641332.1:ENST00000641870.1:ENST00000641949.1:ENST00000641228.1:ENST00000641590.1:ENST00000641843.1:ENST00000642078.1:ENST00000641882.1:ENST00000641742.1:ENST00000641658.1:ENST00000513559.6:ENST00000509826.2:ENST00000642042.1:ENST00000641340.1:ENST00000641369.1:ENST00000642121.1:ENST00000641243.1:ENST00000505284.6:ENST00000641134.1:ENST00000641695.1:ENST00000641503.1:ENST00000641743.1:ENST00000641776.1:ENST00000641264.1:ENST00000508441.2:ENST00000641558.1:ENST00000641140.1:ENST00000641447.1:ENST00000641356.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	44	2	2.05154	2.058225	2.06491	0.0336015	0.0304733	0.143385	0.134145
chrX	154048081	154048181	7912595	0	-	0.5	(0.476,0.515]	chrX	805610	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	MECP2	ENSG00000169057.24	ENST00000303391.11:ENST00000453960.7:ENST00000628176.2:ENST00000407218.5:ENST00000486506.5:ENST00000369957.5:ENST00000631210.1:ENST00000496908.5:ENST00000415944.3:ENST00000460227.4:ENST00000463644.5:ENST00000488293.4:ENST00000630151.2:ENST00000676382.1:ENST00000611468.2:ENST00000637533.1:ENST00000675526.1:ENST00000637791.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	44	2	2.05154	2.058225	2.06491	0.0336015	0.0304733	0.143385	0.134145
chr3	152351013	152351113	1535811	0	+	0.3	(0.28,0.32]	chr3	160003	154	INTRON	INTRON	MBNL1	ENSG00000152601.18	ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000495875.6:ENST00000324210.10:ENST00000493459.5:ENST00000459747.1:ENST00000460591.5:ENST00000545754.5:ENST00000357472.7:ENST00000324196.9:ENST00000498502.5:ENST00000463374.5:ENST00000485910.5:ENST00000465907.6:ENST00000492948.5:ENST00000485509.5:ENST00000464596.5	protein_coding	protein_coding	protein_coding	protein_coding	5	68	2	1.64432	2.05821	2.4721	0.0606133	0.00906617	0.171142	0.0854289
chr7	6058403	6058465	3476244	0	-	0.306452	(0.28,0.32]	chr7	325250	2	SS3_PROX	SS3_PROX:INTRON	EIF2AK1	ENSG00000086232.13	ENST00000199389.11:ENST00000431744.5:ENST00000463213.5:ENST00000446699.1:ENST00000461493.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	59	2	1.72287	2.05817	2.39347	0.0504457	0.0286502	0.156383	0.139456
chr15	56987056	56987156	6032796	0	+	0.38	(0.378,0.408]	chr15	574663	656	INTRON	INTRON	TCF12	ENSG00000140262.18	ENST00000438423.6:ENST00000267811.9:ENST00000333725.10:ENST00000560190.5:ENST00000559609.5:ENST00000558908.5:ENST00000557843.5:ENST00000557947.5:ENST00000561152.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	10	108	2	1.951	2.05815	2.1653	0.00907019	0.00289537	0.0807886	0.0494641
chr11	66722820	66722918	4969702	0	-	0.44898	(0.44,0.476]	chr11	468905	9	INTRON	INTRON	SPTBN2	ENSG00000173898.15	ENST00000533211.6:ENST00000647510.2:ENST00000611817.5:ENST00000309996.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	82	2	1.66775	2.057935	2.44812	0.0219883	0.00368597	0.123836	0.0535094
chr1	23330521	23330621	399450	0	-	0.33	(0.32,0.35]	chr1	47865	64	INTRON	INTRON	HNRNPR	ENSG00000125944.21	ENST00000478691.5:ENST00000302271.11:ENST00000374616.7:ENST00000374612.5:ENST00000675048.1:ENST00000606561.5:ENST00000427764.3:ENST00000463552.5:ENST00000470941.5:ENST00000476451.2	protein_coding	protein_coding	protein_coding	protein_coding	9	110	2	1.5852	2.057915	2.53063	0.0351213	0.00105397	0.137535	0.0299229
chr6	167039978	167040047	3033785	0	+	0.376812	(0.35,0.378]	chr6	282696	1	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	CEP43	ENSG00000213066.13	ENST00000622353.4:ENST00000366847.9:ENST00000349556.4	protein_coding	protein_coding	protein_coding	protein_coding	16	168	2	1.90529	2.057875	2.21046	0.00335487	0.0019131	0.0514696	0.0404307
chr7	148874845	148874944	3670669	0	-	0.434343	(0.408,0.44]	chr7	340632	36	INTRON	INTRON	EZH2	ENSG00000106462.12	ENST00000683292.1:ENST00000320356.7:ENST00000492143.5:ENST00000478654.5:ENST00000350995.6:ENST00000460911.5:ENST00000683744.1:ENST00000682317.1:ENST00000682263.1:ENST00000476773.5:ENST00000483967.5:ENST00000498186.5:ENST00000483012.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	24	243	2	1.76531	2.057795	2.35028	0.00374645	1.25994e-4	0.0537597	0.00959902
chr17	81585903	81586003	6849078	0	-	0.49	(0.476,0.515]	chr17	678158	135	INTRON	INTRON	NPLOC4	ENSG00000182446.14	ENST00000331134.11:ENST00000374747.9:ENST00000574897.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	84	2	1.71266	2.05778	2.4029	0.0293304	0.0016811	0.128055	0.0381232
chr12	113389691	113389788	5232667	0	+	0.402062	(0.378,0.408]	chr12	496335	12	UTR3	UTR3:EXON_MRNA	PLBD2	ENSG00000151176.8	ENST00000280800.5	protein_coding	protein_coding	protein_coding	protein_coding	9	97	2	1.73583	2.05776	2.37969	0.019899	0.00190547	0.109608	0.0403738
chr10	30310581	30310678	4587250	0	-	0.443299	(0.44,0.476]	chr10	422944	9	UTR3	UTR3:EXON_MRNA	MTPAP	ENSG00000107951.15	ENST00000263063.9	protein_coding	protein_coding	protein_coding	protein_coding	6	65	2	1.96975	2.05774	2.14573	0.0238593	0.0123514	0.129075	0.0914865
chr22	20985053	20985149	7480915	0	+	0.447917	(0.44,0.476]	chr22	763112	16	INTRON	INTRON	LZTR1	ENSG00000099949.21	ENST00000414985.5:ENST00000646124.2:ENST00000493460.2:ENST00000443265.5:ENST00000645935.1:ENST00000644435.1:ENST00000642151.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	53	2	2.03266	2.057715	2.08277	0.0309998	0.0155853	0.13151	0.109411
chr9	123913898	123913998	4345864	0	-	0.41	(0.408,0.44]	chr9	399137	345	INTRON	INTRON	DENND1A	ENSG00000119522.17	ENST00000373624.6:ENST00000394215.7:ENST00000373620.7:ENST00000373618.1	protein_coding	protein_coding	protein_coding	protein_coding	8	83	2	1.31757	2.0576	2.79763	0.0705974	5.76635e-4	0.184528	0.0218153
chr6	167828332	167828432	3034351	0	+	0.39	(0.378,0.408]	chr6	282710	4	SS5_PROX	SS5_PROX:INTRON	AFDN	ENSG00000130396.21	ENST00000683244.1:ENST00000400825.8:ENST00000351017.9:ENST00000344191.8:ENST00000392112.5:ENST00000392108.7:ENST00000400824.8:ENST00000400822.7:ENST00000447894.6:ENST00000366809.6:ENST00000366806.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	47	2	1.51223	2.057595	2.60296	0.051139	0.0267851	0.176696	0.123349
chr8	108233672	108233772	4023117	0	-	0.39	(0.378,0.408]	chr8	367661	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	EIF3E	ENSG00000104408.11	ENST00000678042.1:ENST00000678773.1:ENST00000677409.1:ENST00000676892.1:ENST00000523674.2:ENST00000677674.1:ENST00000220849.10:ENST00000678937.1:ENST00000677084.1:ENST00000676706.1:ENST00000518100.6:ENST00000677040.1:ENST00000676698.1:ENST00000522352.6:ENST00000521297.2:ENST00000677501.1:ENST00000519030.6:ENST00000519627.2:ENST00000518345.2:ENST00000522445.6:ENST00000678334.1:ENST00000678023.1:ENST00000678797.1:ENST00000677614.1:ENST00000676642.1:ENST00000677965.1:ENST00000678901.1:ENST00000678243.1:ENST00000676663.1:ENST00000679198.1:ENST00000521614.6:ENST00000678004.1:ENST00000678881.1:ENST00000677590.1:ENST00000677272.1:ENST00000676530.1:ENST00000677746.1:ENST00000676931.1:ENST00000677447.1:ENST00000676548.1:ENST00000676487.1:ENST00000521440.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	47	2	1.51223	2.057595	2.60296	0.051139	0.0267851	0.176696	0.123349
chr1	29104735	29104835	60890	0	+	0.47	(0.44,0.476]	chr1	7771	64	INTRON	INTRON	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000373798.5:ENST00000649674.1:ENST00000343067.9:ENST00000349460.9:ENST00000490308.2:ENST00000650132.1:ENST00000649992.1:ENST00000460378.1:ENST00000462032.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	53	2	1.87325	2.05757	2.24189	0.0265709	0.0193405	0.134088	0.108861
chr18	2672185	2672284	6865027	0	+	0.444444	(0.44,0.476]	chr18	679952	48	INTRON	INTRON	SMCHD1	ENSG00000101596.17	ENST00000320876.11:ENST00000688342.1:ENST00000684915.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	53	2	1.87325	2.05757	2.24189	0.0265709	0.0193405	0.134088	0.108861
chr7	140871198	140871298	3663198	0	-	0.4	(0.378,0.408]	chr7	340105	206	INTRON	INTRON	BRAF	ENSG00000157764.14	ENST00000496384.7:ENST00000644969.2:ENST00000646891.1:ENST00000644905.1:ENST00000642228.1:ENST00000288602.11:ENST00000646730.1:ENST00000497784.2:ENST00000642272.1:ENST00000642808.1:ENST00000643790.1:ENST00000469930.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	46	2	2.00398	2.057505	2.11103	0.0393906	0.0266911	0.143072	0.134419
chr1	246883893	246883993	681459	0	-	0.39	(0.378,0.408]	chr1	79929	62	INTRON	INTRON	AHCTF1	ENSG00000153207.16	ENST00000648844.2:ENST00000326225.3:ENST00000366508.5:ENST00000470300.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	56	2	1.72045	2.057445	2.39444	0.0424671	0.0122858	0.161763	0.091087
chr15	20493974	20494074	6118822	0	-	0.53	(0.515,0.57]	chr15	582481	101	INTRON	INTRON	HERC2P3	ENSG00000180229.12	ENST00000428453.5:ENST00000437318.5:ENST00000430598.5:ENST00000429257.5:ENST00000414804.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	7	63	2	1.94449	2.0574399999999997	2.17039	0.0122196	0.00900252	0.0910127	0.0851009
chr17	28195799	28195896	6584063	0	+	0.268041	[0,0.28]	chr17	639900	13	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	NLK	ENSG00000087095.13	ENST00000407008.8:ENST00000496808.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	109	2	1.83992	2.05738	2.27484	0.0212029	0.0111236	0.123192	0.0877424
chr19	36217043	36217139	7057443	0	+	0.427083	(0.408,0.44]	chr19	704658	15	INTRON	INTRON	ZNF146	ENSG00000167635.12	ENST00000456324.5:ENST00000591063.5:ENST00000443387.3:ENST00000586094.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	126	2	1.98319	2.0572850000000003	2.13138	0.0042785	0.00281125	0.0598356	0.0471596
chrX	110016651	110016751	7700173	0	+	0.43	(0.408,0.44]	chrX	788130	121	INTRON	INTRON	TMEM164	ENSG00000157600.12	ENST00000372072.7:ENST00000471255.5:ENST00000372073.5:ENST00000372068.7:ENST00000288381.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	90	2	1.57433	2.057235	2.54014	0.0229059	0.00255945	0.12581	0.0450085
chr15	90541736	90541836	6099846	0	+	0.41	(0.408,0.44]	chr15	580749	12	INTRON	INTRON	CRTC3	ENSG00000140577.17	ENST00000268184.11:ENST00000420329.6:ENST00000691029.1:ENST00000686240.1:ENST00000560098.5:ENST00000561218.5:ENST00000692149.1:ENST00000558619.5:ENST00000560927.1:ENST00000687075.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	41	2	1.53263	2.05721	2.58179	0.0733439	0.024638	0.190051	0.131869
chr1	235271445	235271545	663295	0	-	0.47	(0.44,0.476]	chr1	78552	103	INTRON	INTRON	ARID4B	ENSG00000054267.22	ENST00000349213.7:ENST00000366603.6:ENST00000264183.9:ENST00000421364.5:ENST00000491632.5:ENST00000418304.1:ENST00000466653.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	40	2	1.81595	2.057185	2.29842	0.0552483	0.0317953	0.165463	0.14477
chr12	132098205	132098305	5250326	0	+	0.44	(0.408,0.44]	chr12	499298	63	INTRON	INTRON	EP400P1	ENSG00000185684.16	ENST00000407361.8:ENST00000446190.5:ENST00000690966.1:ENST00000689047.1:ENST00000454179.7:ENST00000689533.1:ENST00000688036.1:ENST00000688136.1:ENST00000488030.5:ENST00000389560.6:ENST00000689403.1:ENST00000443539.6:ENST00000392352.5:ENST00000539205.5:ENST00000332441.7	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	8	82	2	1.50652	2.057185	2.60785	0.0410276	0.00146754	0.1451	0.035104
chr3	177181691	177181791	1872291	0	-	0.45	(0.44,0.476]	chr3	187438	104	INTRON	INTRON	TBL1XR1	ENSG00000177565.18	ENST00000457928.7:ENST00000430069.5:ENST00000673974.1:ENST00000352800.10:ENST00000422442.6:ENST00000428970.5:ENST00000424913.5:ENST00000437738.5:ENST00000431421.5:ENST00000635794.1:ENST00000630796.2:ENST00000450267.5:ENST00000630833.2:ENST00000431674.5:ENST00000422066.5:ENST00000443315.5:ENST00000627825.2:ENST00000427349.5:ENST00000413084.5:ENST00000637137.1:ENST00000491623.2:ENST00000637544.1:ENST00000636187.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	40	2	1.81595	2.057185	2.29842	0.0552483	0.0317953	0.165463	0.14477
chr6	17657383	17657483	3065707	0	-	0.35	(0.32,0.35]	chr6	284824	51	INTRON	INTRON	NUP153	ENSG00000124789.12	ENST00000613258.4:ENST00000537253.5:ENST00000262077.3	protein_coding	protein_coding	protein_coding	protein_coding	4	47	2	1.88255	2.057185	2.23182	0.068598	0.0269187	0.184298	0.135288
chr6	42581176	42581276	2865229	0	+	0.47	(0.44,0.476]	chr6	271020	68	INTRON	INTRON	UBR2	ENSG00000024048.11	ENST00000372899.6:ENST00000372901.2:ENST00000372903.6	protein_coding	protein_coding	protein_coding	protein_coding	4	40	2	1.81595	2.057185	2.29842	0.0552483	0.0317953	0.165463	0.14477
chr18	187581	187680	6855120	0	+	0.272727	[0,0.28]	chr18	679521	69	INTRON	INTRON	USP14	ENSG00000101557.15	ENST00000582707.5:ENST00000400266.7:ENST00000261601.8:ENST00000578942.5:ENST00000383589.6:ENST00000583119.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	78	2	1.84046	2.05715	2.27384	0.0335889	0.0233847	0.146709	0.11839
chr19	209668	209768	7108785	0	-	0.47	(0.44,0.476]	chr19	713683	1	SS5_ADJ	SS5_ADJ:SS3_PROX:SS5_PROX:INTRON	LINC01002	ENSG00000282508.2	ENST00000631772.1:ENST00000633151.1:ENST00000631644.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	11	115	2	1.80702	2.0569550000000003	2.30689	0.00924948	0.00187835	0.0855292	0.039073
chr22	19513454	19513553	7477184	0	+	0.474747	(0.44,0.476]	chr22	762458	44	INTRON	INTRON	CDC45	ENSG00000093009.11	ENST00000407835.6:ENST00000437685.6:ENST00000438587.6:ENST00000672837.1:ENST00000263201.7:ENST00000404724.7:ENST00000471470.1:ENST00000671972.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	115	2	1.80702	2.0569550000000003	2.30689	0.00924948	0.00187835	0.0855292	0.039073
chrX	154091181	154091281	7913033	0	-	0.41	(0.408,0.44]	chrX	805639	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	MECP2	ENSG00000169057.24	ENST00000303391.11:ENST00000453960.7:ENST00000628176.2:ENST00000407218.5:ENST00000369957.5:ENST00000631210.1:ENST00000496908.5:ENST00000415944.3:ENST00000630151.2:ENST00000676382.1:ENST00000611468.2:ENST00000637533.1:ENST00000675526.1:ENST00000637791.1:ENST00000675841.1:ENST00000674996.1:ENST00000627864.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	61	2	1.79818	2.056915	2.31565	0.020428	0.0154718	0.122109	0.100909
chr3	195684728	195684826	1593711	0	+	0.377551	(0.35,0.378]	chr3	165079	14	EXON_LNCRNA	EXON_LNCRNA:INTRON	MUC20-OT1	ENSG00000242086.8	ENST00000429897.5:ENST00000445430.5:ENST00000600527.5:ENST00000626089.2:ENST00000451982.6:ENST00000601648.5:ENST00000414625.6:ENST00000628917.2:ENST00000625358.2:ENST00000602127.5:ENST00000625882.2:ENST00000625632.2:ENST00000626706.1:ENST00000627767.1:ENST00000627502.2:ENST00000597034.5:ENST00000629823.2:ENST00000630243.2:ENST00000608699.3:ENST00000627718.2	lncRNA	lncRNA	lncRNA	lncRNA	11	124	2	2.02753	2.056905	2.08628	0.00561176	0.00372465	0.0653419	0.0561984
chr2	151447959	151448057	893605	0	+	0.265306	[0,0.28]	chr2	98976	10	INTRON	INTRON	RIF1	ENSG00000080345.18	ENST00000453091.6:ENST00000428287.6:ENST00000444746.7:ENST00000243326.9:ENST00000414861.6:ENST00000430328.6	protein_coding	protein_coding	protein_coding	protein_coding	7	108	2	1.73951	2.05676	2.37401	0.0353767	0.00568456	0.137535	0.0678837
chr7	66952328	66952427	3326548	0	+	0.555556	(0.515,0.57]	chr7	309365	8	INTRON	INTRON	TMEM248	ENSG00000106609.16	ENST00000341567.8:ENST00000433271.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	34	2	1.67758	2.056735	2.43589	0.0471728	0.0370871	0.168737	0.139194
chr7	107892699	107892799	3379628	0	+	0.52	(0.515,0.57]	chr7	316565	1	SS3_PROX	SS3_PROX:INTRON	DLD	ENSG00000091140.15	ENST00000485066.1:ENST00000417551.5:ENST00000415325.5:ENST00000440410.5:ENST00000437604.6:ENST00000205402.10:ENST00000451081.5:ENST00000450038.5:ENST00000453354.5:ENST00000460577.5:ENST00000494441.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	34	2	1.67758	2.056735	2.43589	0.0471728	0.0370871	0.168737	0.139194
chr20	17957337	17957437	7320453	0	-	0.56	(0.515,0.57]	chr20	745327	3	SS3_PROX	SS3_PROX:INTRON	SNX5	ENSG00000089006.17	ENST00000377768.7:ENST00000490175.5:ENST00000483485.5:ENST00000377759.9:ENST00000431277.5:ENST00000419004.2:ENST00000474883.5:ENST00000475716.5:ENST00000469704.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	80	2	1.82113	2.05668	2.29223	0.0118311	0.00290031	0.0962115	0.047789
chr14	103685194	103685283	5828222	0	+	0.348315	(0.32,0.35]	chr14	553124	3	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	KLC1	ENSG00000126214.22	ENST00000348520.10:ENST00000380038.7:ENST00000334553.11:ENST00000389744.8:ENST00000555836.5:ENST00000347839.10:ENST00000553286.5:ENST00000557575.5:ENST00000452929.6:ENST00000554280.5:ENST00000557450.5:ENST00000554228.5:ENST00000634686.1:ENST00000246489.11:ENST00000445352.8:ENST00000537046.6:ENST00000553325.5:ENST00000555856.1:ENST00000535194.2:ENST00000553680.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	72	2	2.02327	2.05666	2.09005	0.0330483	0.00956045	0.133816	0.0863913
chr19	21034288	21034385	7039251	0	+	0.381443	(0.378,0.408]	chr19	701854	2	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	ZNF430	ENSG00000118620.13	ENST00000599548.5:ENST00000594110.5:ENST00000261560.10:ENST00000595401.1	protein_coding	protein_coding	protein_coding	protein_coding	12	129	2	1.72469	2.056615	2.38854	0.0155	5.74431e-4	0.100909	0.0217621
chr14	45143089	45143188	5714941	0	+	0.313131	(0.28,0.32]	chr14	542545	20	INTRON	INTRON	FANCM	ENSG00000187790.12	ENST00000267430.10:ENST00000556250.6:ENST00000696641.1:ENST00000556036.6:ENST00000696646.1:ENST00000696647.1:ENST00000542564.6:ENST00000696675.1:ENST00000696642.1:ENST00000696649.1:ENST00000696648.1:ENST00000696662.1:ENST00000696681.1:ENST00000696680.1:ENST00000696657.1:ENST00000696656.1:ENST00000696678.1:ENST00000696679.1:ENST00000696677.1:ENST00000696650.1:ENST00000696643.1:ENST00000696658.1:ENST00000696682.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	43	2	1.81582	2.05653	2.29724	0.068122	0.0554156	0.184298	0.18407
chr3	6652529	6652629	1357769	0	+	0.36	(0.35,0.378]	chr3	142522	681	INTRON	INTRON	ENSG00000189229	ENSG00000189229.12	ENST00000433639.1:ENST00000655754.1:ENST00000658468.1:ENST00000669512.1:ENST00000667028.1:ENST00000655541.1:ENST00000668643.1:ENST00000671568.1:ENST00000671036.1:ENST00000669798.1:ENST00000655753.1:ENST00000655856.1:ENST00000658398.1:ENST00000661518.1:ENST00000661279.1:ENST00000655495.1:ENST00000663041.1:ENST00000659827.1:ENST00000667716.1:ENST00000668416.1:ENST00000658133.1:ENST00000342990.4:ENST00000660054.1:ENST00000671370.1	lncRNA	lncRNA	lncRNA	lncRNA	6	67	2	1.56881	2.0565100000000003	2.54421	0.047622	0.00630238	0.153019	0.0722266
chr11	66620545	66620645	4810838	0	+	0.45	(0.44,0.476]	chr11	447856	3	SS3_PROX	SS3_PROX:INTRON	RBM14-RBM4:RBM14	ENSG00000248643.5:ENSG00000239306.5	ENST00000412278.2:ENST00000393979.3:ENST00000511114.1:ENST00000310137.5:ENST00000409372.1:ENST00000421355.1:ENST00000443702.1:ENST00000500635.2:ENST00000409738.4:ENST00000461478.1:ENST00000496694.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	16	142	2	1.50267	2.05649	2.61031	0.0107135	8.11387e-4	0.092014	0.0263656
chrX	66171504	66171604	7672754	0	+	0.34	(0.32,0.35]	chrX	785264	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	HEPH	ENSG00000089472.18	ENST00000519389.6:ENST00000683049.1:ENST00000458621.6:ENST00000684042.1:ENST00000343002.7:ENST00000336279.9:ENST00000429547.6:ENST00000441993.7:ENST00000419594.6:ENST00000682362.1:ENST00000425114.2:ENST00000682927.1:ENST00000683420.1:ENST00000684071.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	88	2	1.72405	2.056435	2.38882	0.0275418	0.00566663	0.137011	0.0653997
chr1	20782225	20782324	389818	0	-	0.353535	(0.35,0.378]	chr1	46582	13	INTRON	INTRON	HP1BP3	ENSG00000127483.19	ENST00000438032.6:ENST00000312239.10:ENST00000424732.5:ENST00000417710.5:ENST00000375000.5:ENST00000437575.5:ENST00000419490.5:ENST00000414993.1:ENST00000443615.1	protein_coding	protein_coding	protein_coding	protein_coding	12	105	2	1.41382	2.05643	2.69904	0.0209096	0.00438476	0.122348	0.0585064
chr7	155305870	155305969	3451846	0	+	0.424242	(0.408,0.44]	chr7	322633	16	INTRON	INTRON	INSIG1	ENSG00000186480.13	ENST00000344756.8:ENST00000340368.9:ENST00000342407.5:ENST00000476756.1	protein_coding	protein_coding	protein_coding	protein_coding	15	147	2	1.54949	2.0563849999999997	2.56328	0.011402	5.57055e-4	0.0955101	0.0217755
chrX	71412135	71412234	7678705	0	+	0.50505	(0.476,0.515]	chrX	786269	36	INTRON	INTRON	TAF1	ENSG00000147133.17	ENST00000683202.1:ENST00000373790.9:ENST00000423759.6:ENST00000683782.1:ENST00000683668.1:ENST00000276072.9:ENST00000463163.5:ENST00000373775.8:ENST00000485087.6:ENST00000437147.8:ENST00000683358.1:ENST00000682124.1:ENST00000461764.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	21	205	2	1.84089	2.0563599999999997	2.27183	0.00179114	6.92865e-4	0.0392772	0.0241675
chrX	44932184	44932284	7649192	0	+	0.46	(0.44,0.476]	chrX	782726	578	INTRON	INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000675440.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000621147.5:ENST00000475233.1:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	108	2	1.36535	2.05634	2.74733	0.0277582	9.96884e-4	0.137011	0.0288906
chr3	177158077	177158176	1872052	0	-	0.242424	[0,0.28]	chr3	187422	220	INTRON	INTRON	TBL1XR1	ENSG00000177565.18	ENST00000457928.7:ENST00000430069.5:ENST00000673974.1:ENST00000352800.10:ENST00000422442.6:ENST00000428970.5:ENST00000424913.5:ENST00000437738.5:ENST00000431421.5:ENST00000635794.1:ENST00000630796.2:ENST00000450267.5:ENST00000630833.2:ENST00000431674.5:ENST00000422066.5:ENST00000443315.5:ENST00000627825.2:ENST00000427349.5:ENST00000413084.5:ENST00000637137.1:ENST00000491623.2:ENST00000637544.1:ENST00000636187.1:ENST00000636912.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	47	2	1.84147	2.05633	2.27119	0.070351	0.0610416	0.193277	0.184298
chr9	133259122	133259220	4369867	0	-	0.428571	(0.408,0.44]	chr9	402050	6	INTRON	INTRON	ABO	ENSG00000175164.16	ENST00000679909.1:ENST00000453660.4:ENST00000647353.1:ENST00000611156.4:ENST00000538324.2:ENST00000651471.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	134	2	1.87871	2.05633	2.23395	0.00625147	0.001262	0.0684077	0.0329641
chrX	13349305	13349405	7622449	0	+	0.31	(0.28,0.32]	chrX	780353	76	INTRON	INTRON	LINC01203	ENSG00000226985.7	ENST00000669963.1:ENST00000661545.1:ENST00000659526.1:ENST00000656410.1:ENST00000661104.1:ENST00000456091.2:ENST00000655502.1:ENST00000671651.1:ENST00000656979.1:ENST00000656271.1:ENST00000661629.1:ENST00000661464.1:ENST00000668192.1:ENST00000665887.1:ENST00000659191.1:ENST00000667868.1:ENST00000653729.1:ENST00000656111.1	lncRNA	lncRNA	lncRNA	lncRNA	7	95	2	1.89468	2.05633	2.21798	0.019774	0.00901091	0.109608	0.0851009
chrX	63348305	63348403	7825344	0	-	0.234694	[0,0.28]	chrX	798580	12	UTR3	UTR3:EXON_MRNA	SPIN4	ENSG00000186767.7	ENST00000374884.3	protein_coding	protein_coding	protein_coding	protein_coding	3	47	2	1.84147	2.05633	2.27119	0.070351	0.0610416	0.193277	0.184298
chr17	59700050	59700149	6802675	0	-	0.373737	(0.35,0.378]	chr17	671890	13	UTR5	UTR5:EXON_MRNA:SS3_PROX:INTRON	PTRH2	ENSG00000141378.15	ENST00000587935.1:ENST00000409433.2:ENST00000393038.3:ENST00000470557.2:ENST00000579915.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	60	2	1.58862	2.056285	2.52395	0.0615516	0.00824736	0.193423	0.0773378
chr20	5572720	5572819	7311950	0	-	0.272727	[0,0.28]	chr20	744561	21	INTRON	INTRON	GPCPD1	ENSG00000125772.14	ENST00000379019.7:ENST00000481038.5:ENST00000418646.5:ENST00000633552.1:ENST00000473797.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	125	2	1.43856	2.05625	2.67394	0.0304026	0.00697944	0.143385	0.0718189
chr1	26728911	26729003	51501	0	+	0.358696	(0.35,0.378]	chr1	6547	1	UTR5	UTR5:EXON_MRNA:INTRON	ARID1A	ENSG00000117713.21	ENST00000430799.7:ENST00000324856.13:ENST00000637465.1:ENST00000457599.6:ENST00000524572.1:ENST00000374152.7	protein_coding	protein_coding	protein_coding	protein_coding	7	80	2	1.99351	2.0562	2.11889	0.020841	0.00625927	0.111648	0.0720609
chr10	119055649	119055748	4704654	0	-	0.373737	(0.35,0.378]	chr10	433947	40	INTRON	INTRON	EIF3A	ENSG00000107581.13	ENST00000369144.8:ENST00000541549.2	protein_coding	protein_coding	protein_coding	protein_coding	7	80	2	1.97697	2.056105	2.13524	0.0130865	0.0109711	0.0934394	0.092635
chrX	154088201	154088301	7913003	0	-	0.28	[0,0.28]	chrX	805637	147	INTRON	INTRON	MECP2	ENSG00000169057.24	ENST00000303391.11:ENST00000453960.7:ENST00000628176.2:ENST00000407218.5:ENST00000369957.5:ENST00000631210.1:ENST00000496908.5:ENST00000415944.3:ENST00000630151.2:ENST00000676382.1:ENST00000611468.2:ENST00000637533.1:ENST00000675526.1:ENST00000637791.1:ENST00000675841.1:ENST00000674996.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	99	2	1.62448	2.0561	2.48772	0.0302032	0.0125761	0.142761	0.0926667
chr18	692514	692610	6939571	0	-	0.416667	(0.408,0.44]	chr18	686419	14	EXON_MRNA	EXON_MRNA:INTRON	ENOSF1	ENSG00000132199.20	ENST00000647584.2:ENST00000383578.7:ENST00000584259.6:ENST00000340116.12:ENST00000581475.5:ENST00000580982.5:ENST00000585128.6:ENST00000584453.5:ENST00000578651.5:ENST00000585004.5:ENST00000579053.5:ENST00000583771.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	21	212	2	1.83728	2.056045	2.27481	0.002367	6.70606e-4	0.043778	0.0235103
chr18	57578955	57579054	6980397	0	-	0.464646	(0.44,0.476]	chr18	690628	52	INTRON	INTRON	FECH	ENSG00000066926.13	ENST00000262093.11:ENST00000652755.1:ENST00000651787.1:ENST00000382873.8:ENST00000585494.5:ENST00000682485.1:ENST00000592699.6:ENST00000585699.1:ENST00000585747.1:ENST00000585878.1:ENST00000592111.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	44	2	1.83899	2.056015	2.27304	0.0589734	0.0158915	0.167915	0.109464
chr15	22502740	22502839	5974594	0	+	0.444444	(0.44,0.476]	chr15	568077	67	INTRON	INTRON	HERC2P2	ENSG00000276550.5	ENST00000613386.4	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	5	45	2	1.43625	2.055985	2.67572	0.063142	0.0212064	0.197183	0.113017
chr6	98910431	98910530	3165208	0	-	0.444444	(0.44,0.476]	chr6	295199	44	INTRON	INTRON	FBXL4	ENSG00000112234.9	ENST00000369244.7:ENST00000229971.2	protein_coding	protein_coding	protein_coding	protein_coding	5	45	2	1.43625	2.055985	2.67572	0.063142	0.0212064	0.197183	0.113017
chr16	29547743	29547841	6471068	0	-	0.510204	(0.476,0.515]	chr16	625235	11	INTRON	INTRON	ENSG00000288632:SMG1P2	ENSG00000288632.1:ENSG00000205534.6	ENST00000675579.1:ENST00000566127.1	lncRNA	lncRNA	lncRNA:transcribed_unprocessed_pseudogene	lncRNA:transcribed_unprocessed_pseudogene	5	45	2	1.48023	2.055955	2.63168	0.0559072	0.0237106	0.18407	0.118716
chr19	21326761	21326861	7158614	0	-	0.5	(0.476,0.515]	chr19	723671	158	INTRON	INTRON	ZNF708	ENSG00000182141.10	ENST00000356929.3:ENST00000598046.5:ENST00000601295.1:ENST00000602023.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	53	2	1.79187	2.05594	2.32001	0.0362169	0.0136217	0.138959	0.101682
chr6	31753875	31753957	2843633	0	+	0.451219	(0.44,0.476]	chr6	267816	4	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	MSH5:MSH5-SAPCD1	ENSG00000204410.16:ENSG00000255152.8	ENST00000375755.8:ENST00000375750.9:ENST00000650702.1:ENST00000493662.6:ENST00000375703.7:ENST00000375740.7:ENST00000423982.6:ENST00000463144.5:ENST00000450148.5:ENST00000497269.5:ENST00000468602.5:ENST00000468136.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	42	2	1.71574	2.05589	2.39604	0.045256	0.0404291	0.161534	0.149888
chr12	123461478	123461576	5242876	0	+	0.469388	(0.44,0.476]	chr12	498236	12	INTRON	INTRON	SNRNP35	ENSG00000184209.15	ENST00000527158.2:ENST00000529201.1:ENST00000526639.3:ENST00000412157.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	44	2	1.96602	2.055875	2.14573	0.0426807	0.0238593	0.148082	0.129075
chr3	48926429	48926525	1421528	0	+	0.458333	(0.44,0.476]	chr3	149474	11	INTRON	INTRON	ARIH2	ENSG00000177479.20	ENST00000478224.5:ENST00000430423.5:ENST00000452882.5:ENST00000498314.5:ENST00000474618.5:ENST00000449376.5:ENST00000490095.5:ENST00000356401.9:ENST00000495761.5:ENST00000483333.5:ENST00000482427.5:ENST00000488963.5:ENST00000420814.5:ENST00000486316.5:ENST00000449729.5:ENST00000433170.5:ENST00000474936.6:ENST00000466850.1:ENST00000484999.5:ENST00000470296.5:ENST00000463204.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	44	2	1.96602	2.055875	2.14573	0.0426807	0.0238593	0.148082	0.129075
chr3	12571668	12571768	1368027	0	+	0.35	(0.32,0.35]	chr3	144087	2	SS3_PROX	SS3_PROX:INTRON	MKRN2	ENSG00000075975.17	ENST00000677816.1:ENST00000677941.1:ENST00000676544.1:ENST00000677237.1:ENST00000679143.1:ENST00000676701.1:ENST00000170447.12:ENST00000411987.5:ENST00000448482.1:ENST00000677142.1:ENST00000676541.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	55	2	1.80487	2.0558	2.30673	0.0584434	0.0210603	0.167723	0.122559
chr10	7319147	7319247	4552014	0	-	0.41	(0.408,0.44]	chr10	420230	328	INTRON	INTRON	SFMBT2	ENSG00000198879.13	ENST00000397167.6:ENST00000361972.8:ENST00000684547.1:ENST00000683762.1:ENST00000673876.1:ENST00000682896.1:ENST00000379713.8:ENST00000682101.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	34	2	1.81572	2.05571	2.2957	0.0626779	0.0516458	0.176696	0.175915
chr7	5409388	5409488	3471939	0	-	0.43	(0.408,0.44]	chr7	324678	21	INTRON	INTRON	TNRC18	ENSG00000182095.15	ENST00000399537.8:ENST00000430969.6:ENST00000399434.2	protein_coding	protein_coding	protein_coding	protein_coding	3	34	2	1.81572	2.05571	2.2957	0.0626779	0.0516458	0.176696	0.175915
chr3	197125050	197125148	1901755	0	-	0.346939	(0.32,0.35]	chr3	190571	52	INTRON	INTRON	DLG1	ENSG00000075711.21	ENST00000667157.1:ENST00000346964.6:ENST00000656428.1:ENST00000663148.1:ENST00000655488.1:ENST00000357674.9:ENST00000671185.1:ENST00000658701.1:ENST00000667104.1:ENST00000661336.1:ENST00000669565.1:ENST00000670455.1:ENST00000656087.1:ENST00000670366.1:ENST00000653583.1:ENST00000653795.1:ENST00000671246.1:ENST00000661453.1:ENST00000665728.1:ENST00000664564.1:ENST00000653331.1:ENST00000660432.1:ENST00000660898.1:ENST00000657381.1:ENST00000659221.1:ENST00000654737.1:ENST00000669332.1:ENST00000659716.1:ENST00000660553.1:ENST00000664991.1:ENST00000419354.5:ENST00000661440.1:ENST00000667971.1:ENST00000670935.1:ENST00000668578.1:ENST00000666007.1:ENST00000661229.1:ENST00000660237.1:ENST00000657098.1:ENST00000661013.1:ENST00000436682.6:ENST00000452595.5:ENST00000662727.1:ENST00000422288.6:ENST00000448528.6:ENST00000443183.5:ENST00000656944.1:ENST00000392382.6:ENST00000450955.5:ENST00000658155.1:ENST00000669714.1:ENST00000654733.1:ENST00000469073.2:ENST00000419227.5:ENST00000392381.7:ENST00000471733.5:ENST00000419553.6:ENST00000447466.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	62	2	2.02133	2.0556900000000002	2.09005	0.0330483	0.017146	0.133816	0.111072
chr9	37199042	37199142	4118447	0	+	0.43	(0.408,0.44]	chr9	375389	121	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000461038.5:ENST00000488607.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	74	2	1.84516	2.055665	2.26617	0.0193431	0.00649402	0.108861	0.0734343
chr1	111137222	111137322	522451	0	-	0.35	(0.32,0.35]	chr1	61421	3	SS5_PROX	SS5_PROX:INTRON	DRAM2	ENSG00000156171.15	ENST00000484310.6:ENST00000539140.6:ENST00000286692.8:ENST00000496430.6:ENST00000480600.6:ENST00000490780.5:ENST00000463682.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	62	2	1.93031	2.055615	2.18092	0.0256608	0.0231421	0.126939	0.120491
chr15	63511875	63511974	6041973	0	+	0.222222	[0,0.28]	chr15	575351	67	INTRON	INTRON	USP3	ENSG00000140455.17	ENST00000540797.5:ENST00000380324.8:ENST00000561442.5:ENST00000560070.5:ENST00000557884.5:ENST00000558157.5:ENST00000561326.5:ENST00000559873.5:ENST00000559192.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	89	2	1.87045	2.05549	2.24053	0.0256186	0.0191786	0.120376	0.119771
chr9	111362469	111362569	4314021	0	-	0.37	(0.35,0.378]	chr9	396584	3	SS3_PROX	SS3_PROX:INTRON	ECPAS	ENSG00000136813.15	ENST00000684092.1:ENST00000338205.9:ENST00000259335.8:ENST00000374383.1	protein_coding	protein_coding	protein_coding	protein_coding	10	105	2	1.33473	2.05549	2.77625	0.0484067	7.04769e-4	0.153635	0.0241881
chr15	82397886	82397985	6075961	0	+	0.424242	(0.408,0.44]	chr15	578731	56	INTRON	INTRON	UBE2Q2P2	ENSG00000259429.5	ENST00000618775.4:ENST00000613592.4	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	9	94	2	1.87932	2.055465	2.23161	0.0172104	0.00206564	0.104099	0.04217
chr2	55039416	55039516	1121299	0	-	0.34	(0.32,0.35]	chr2	120163	108	INTRON	INTRON	RTN4	ENSG00000115310.19	ENST00000404909.5:ENST00000394611.6:ENST00000317610.11:ENST00000357732.8:ENST00000337526.11:ENST00000357376.7:ENST00000405240.5:ENST00000438462.1:ENST00000427710.5	protein_coding	protein_coding	protein_coding	protein_coding	10	122	2	1.83295	2.05543	2.27791	0.0224097	0.00121437	0.11692	0.032255
chr1	246191294	246191393	677547	0	-	0.414141	(0.408,0.44]	chr1	79729	23	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000391836.3:ENST00000453676.5:ENST00000462422.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	61	2	1.70409	2.0553500000000002	2.40661	0.028108	0.011475	0.137011	0.0888882
chr15	95642102	95642201	6108386	0	+	0.393939	(0.378,0.408]	chr15	581765	32	INTRON	INTRON	ENSG00000275016	ENSG00000275016.5	ENST00000612595.2:ENST00000661571.1:ENST00000614344.5:ENST00000667344.1:ENST00000666682.1:ENST00000663174.1:ENST00000661536.1:ENST00000615194.1:ENST00000667774.1:ENST00000616588.4:ENST00000656202.1:ENST00000666386.1:ENST00000611285.1	lncRNA	lncRNA	lncRNA	lncRNA	8	87	2	1.88716	2.055255	2.22335	0.017192	0.00388279	0.104099	0.0567196
chr20	50951345	50951444	7356062	0	-	0.383838	(0.378,0.408]	chr20	750154	20	INTRON	INTRON	DPM1	ENSG00000000419.14	ENST00000371582.8:ENST00000466152.5:ENST00000683048.1:ENST00000371588.10:ENST00000371584.9:ENST00000683466.1:ENST00000681979.1:ENST00000684708.1:ENST00000413082.1:ENST00000682754.1:ENST00000683010.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	77	2	1.82258	2.055255	2.28793	0.0341279	0.00291235	0.135102	0.0494641
chr19	36222376	36222476	7057497	0	+	0.39	(0.378,0.408]	chr19	704664	38	INTRON	INTRON	ZNF146	ENSG00000167635.12	ENST00000456324.5:ENST00000591063.5:ENST00000443387.3:ENST00000586094.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	57	2	1.59317	2.05525	2.51733	0.0603812	0.00808319	0.19151	0.0766625
chr4	138242069	138242162	2245831	0	-	0.408602	(0.408,0.44]	chr4	219519	1	UTR5	UTR5:EXON_MRNA	SLC7A11	ENSG00000151012.13	ENST00000280612.9	protein_coding	protein_coding	protein_coding	protein_coding	17	173	2	1.87977	2.0552449999999998	2.23072	0.0282738	1.4929e-4	0.125825	0.0106137
chr6	163502989	163503089	3032595	0	+	0.36	(0.35,0.378]	chr6	282586	237	INTRON	INTRON	QKI	ENSG00000112531.17	ENST00000361758.8:ENST00000453779.6:ENST00000275262.11:ENST00000392127.6:ENST00000361752.8:ENST00000361195.6:ENST00000424802.7:ENST00000545607.5:ENST00000544436.5:ENST00000537041.5:ENST00000545346.1:ENST00000544823.5:ENST00000537883.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	50	2	1.82887	2.05506	2.28125	0.0584878	0.0182271	0.189395	0.107842
chr7	43646873	43646970	3525543	0	-	0.453608	(0.44,0.476]	chr7	328742	4	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	COA1	ENSG00000106603.20	ENST00000415076.6:ENST00000446330.6:ENST00000446564.5:ENST00000438444.5:ENST00000223336.11:ENST00000310564.10:ENST00000395879.5:ENST00000415798.5:ENST00000431651.5:ENST00000451651.5:ENST00000418140.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	17	158	2	1.52212	2.05506	2.588	0.00981903	4.74756e-4	0.0877296	0.0201674
chrX	114052534	114052633	7868567	0	-	0.363636	(0.35,0.378]	chrX	801557	97	INTRON	INTRON	XACT	ENSG00000241743.4	ENST00000468762.3:ENST00000649506.1	lncRNA	lncRNA	lncRNA	lncRNA	4	50	2	1.82887	2.05506	2.28125	0.0584878	0.0182271	0.189395	0.107842
chr2	112653744	112653843	852144	0	+	0.333333	(0.32,0.35]	chr2	95585	4	INTRON	INTRON	SLC20A1	ENSG00000144136.11	ENST00000272542.8:ENST00000498224.5:ENST00000433924.5:ENST00000456264.5:ENST00000413135.1:ENST00000480984.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	86	2	1.92705	2.05502	2.18299	0.0267365	0.00505063	0.123349	0.0646039
chr10	116903448	116903547	4699468	0	-	0.515152	(0.476,0.515]	chr10	433616	11	INTRON	INTRON	SHTN1	ENSG00000187164.20	ENST00000355371.9:ENST00000615301.4:ENST00000260777.14:ENST00000497044.5:ENST00000392901.10:ENST00000392903.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	33	2	1.72558	2.0549999999999997	2.38442	0.0767648	0.0417472	0.196164	0.161736
chr15	43853145	43853245	6012903	0	+	0.49	(0.476,0.515]	chr15	572794	15	INTRON	INTRON	WDR76	ENSG00000092470.12	ENST00000381246.6:ENST00000263795.11	protein_coding	protein_coding	protein_coding	protein_coding	3	33	2	1.72558	2.0549999999999997	2.38442	0.0767648	0.0417472	0.196164	0.161736
chr7	99141830	99141929	3583123	0	-	0.484848	(0.476,0.515]	chr7	333710	203	INTRON	INTRON	SMURF1	ENSG00000198742.10	ENST00000361368.7:ENST00000361125.1:ENST00000472627.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	33	2	1.72558	2.0549999999999997	2.38442	0.0767648	0.0417472	0.196164	0.161736
chr3	43577166	43577261	1674991	0	-	0.410526	(0.408,0.44]	chr3	171011	6	CDS	CDS:EXON_MRNA:INTRON	ANO10	ENSG00000160746.13	ENST00000292246.8:ENST00000350459.8:ENST00000396091.7:ENST00000414522.6:ENST00000451430.6:ENST00000427171.5:ENST00000428472.5	protein_coding	protein_coding	protein_coding	protein_coding	7	68	2	1.74813	2.05499	2.36185	0.0163902	0.0133164	0.109715	0.094512
chr1	32793421	32793519	415920	0	-	0.438776	(0.408,0.44]	chr1	50188	18	INTRON	INTRON	YARS1	ENSG00000134684.13	ENST00000373477.9:ENST00000676297.1:ENST00000674654.1:ENST00000674629.1:ENST00000675785.2:ENST00000481895.6:ENST00000616261.2:ENST00000466052.1:ENST00000470377.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	115	2	1.76523	2.05495	2.34467	0.0174785	7.0284e-4	0.10482	0.0241881
chr1	32797331	32797418	415960	0	-	0.436782	(0.408,0.44]	chr1	50191	3	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	YARS1	ENSG00000134684.13	ENST00000373477.9:ENST00000676297.1:ENST00000674654.1:ENST00000674629.1:ENST00000675785.2:ENST00000481895.6:ENST00000616261.2:ENST00000466052.1:ENST00000470377.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	15	154	2	1.83848	2.054945	2.27141	0.00739981	4.7661e-4	0.0743092	0.0197539
chr12	64438743	64438843	5153252	0	+	0.48	(0.476,0.515]	chr12	487834	1	SS3_PROX	SS3_PROX:INTRON	XPOT	ENSG00000184575.12	ENST00000332707.10	protein_coding	protein_coding	protein_coding	protein_coding	7	69	2	1.94611	2.05494	2.16377	0.0243026	0.0075261	0.12011	0.0773151
chr1	86979738	86979838	154246	0	+	0.37	(0.35,0.378]	chr1	16969	43	INTRON	INTRON	HS2ST1	ENSG00000153936.18	ENST00000370550.10:ENST00000370551.8:ENST00000687893.1:ENST00000693745.1:ENST00000689904.1:ENST00000690674.1:ENST00000591456.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	43	2	1.71046	2.054925	2.39939	0.0458078	0.0441269	0.162255	0.149888
chr3	49780376	49780476	1694822	0	-	0.37	(0.35,0.378]	chr3	173818	316	INTRON	INTRON	IP6K1	ENSG00000176095.12	ENST00000321599.9:ENST00000395238.5:ENST00000613416.4:ENST00000468463.5:ENST00000460540.1:ENST00000498149.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	43	2	1.71046	2.054925	2.39939	0.0458078	0.0441269	0.162255	0.149888
chr7	157338011	157338111	3455309	0	+	0.4	(0.378,0.408]	chr7	323047	2	SS5_PROX	SS5_PROX:INTRON	DNAJB6	ENSG00000105993.15	ENST00000441561.5:ENST00000429029.6:ENST00000262177.9:ENST00000486083.6:ENST00000417758.5:ENST00000459889.5:ENST00000443280.5:ENST00000488001.5:ENST00000441291.5:ENST00000437030.5:ENST00000412557.5:ENST00000453383.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	41	2	1.72045	2.05459	2.38873	0.0458857	0.0424671	0.161763	0.149888
chr12	93382627	93382727	5188987	0	+	0.37	(0.35,0.378]	chr12	490788	12	INTRON	INTRON	NUDT4	ENSG00000173598.14	ENST00000337179.9:ENST00000415493.7:ENST00000549992.5:ENST00000550056.5:ENST00000547014.5:ENST00000548662.5:ENST00000546925.1	protein_coding	protein_coding	protein_coding	protein_coding	9	98	2	1.22527	2.054525	2.88378	0.0773701	4.08693e-4	0.196285	0.0181306
chr7	105054185	105054284	3375024	0	+	0.242424	[0,0.28]	chr7	315877	128	INTRON	INTRON	KMT2E	ENSG00000005483.22	ENST00000622386.2:ENST00000257745.9:ENST00000334884.9:ENST00000311117.8:ENST00000478990.5:ENST00000495267.5:ENST00000476671.5:ENST00000667857.1:ENST00000474203.5:ENST00000482560.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	121	2	1.80256	2.054485	2.30641	0.0213596	0.00972348	0.113755	0.0876983
chr14	101872739	101872839	5819623	0	+	0.33	(0.32,0.35]	chr14	551879	155	INTRON	INTRON	PPP2R5C	ENSG00000078304.20	ENST00000694906.1:ENST00000422945.6:ENST00000328724.9:ENST00000350249.7:ENST00000557621.5:ENST00000556307.5:ENST00000553730.5:ENST00000334743.9:ENST00000445439.7:ENST00000557095.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	53	2	1.88468	2.0544849999999997	2.22429	0.0515071	0.0226421	0.176696	0.117557
chr9	107288397	107288497	4183428	0	+	0.37	(0.35,0.378]	chr9	381543	31	INTRON	INTRON	RAD23B	ENSG00000119318.13	ENST00000419616.5:ENST00000358015.8:ENST00000416373.6:ENST00000442587.1	protein_coding	protein_coding	protein_coding	protein_coding	6	70	2	1.99351	2.05441	2.11531	0.020841	0.0119629	0.111648	0.0962115
chr6	3266600	3266699	2789322	0	+	0.414141	(0.408,0.44]	chr6	263453	24	UTR3	UTR3:EXON_MRNA:INTRON	PSMG4	ENSG00000180822.12	ENST00000509933.1:ENST00000380306.8:ENST00000380305.4:ENST00000438998.7:ENST00000419065.6:ENST00000473000.2:ENST00000324987.4:ENST00000451246.2:ENST00000454610.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	75	2	1.97721	2.0543899999999997	2.13157	0.0121661	0.0109031	0.0923273	0.0910127
chr17	64505338	64505438	6815874	0	-	0.52	(0.515,0.57]	chr17	673827	6	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DDX5	ENSG00000108654.16	ENST00000225792.10:ENST00000678890.1:ENST00000676601.1:ENST00000676575.1:ENST00000676969.1:ENST00000678810.1:ENST00000585317.2:ENST00000678110.1:ENST00000580026.6:ENST00000678757.1:ENST00000676581.1:ENST00000676785.1:ENST00000585111.2:ENST00000577922.6:ENST00000450599.7:ENST00000678814.1:ENST00000677726.1:ENST00000583212.2:ENST00000579461.2:ENST00000540698.6:ENST00000581230.5:ENST00000581693.5:ENST00000582326.2:ENST00000578491.2:ENST00000578804.5:ENST00000578400.5:ENST00000581697.5:ENST00000581806.5:ENST00000578190.5:ENST00000583239.6:ENST00000579091.5:ENST00000585060.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	15	146	2	1.55764	2.054335	2.55103	0.0183076	9.76732e-5	0.11576	0.00889684
chr1	65330321	65330421	136298	0	+	0.38	(0.378,0.408]	chr1	15352	200	INTRON	INTRON	DNAJC6	ENSG00000116675.16	ENST00000463018.5:ENST00000494710.6:ENST00000263441.11:ENST00000395325.7:ENST00000483402.1:ENST00000371069.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	55	2	1.94559	2.05431	2.16303	0.0252473	0.0211434	0.122929	0.12011
chr1	1474481	1474581	1592	0	+	0.54	(0.515,0.57]	chr1	364	20	INTRON	INTRON	ATAD3B	ENSG00000160072.20	ENST00000673477.1:ENST00000308647.8	protein_coding	protein_coding	protein_coding	protein_coding	10	88	2	2.02187	2.054245	2.08662	0.0055814	0.00375149	0.0649993	0.0562562
chr20	47219857	47219957	7348123	0	-	0.39	(0.378,0.408]	chr20	749230	2	SS5_PROX	SS5_PROX:INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000467200.6:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4	protein_coding	protein_coding	protein_coding	protein_coding	10	108	2	2.00012	2.05424	2.10836	0.00748818	0.00375851	0.074841	0.0562562
chr16	87759357	87759456	6538614	0	-	0.383838	(0.378,0.408]	chr16	633568	15	INTRON	INTRON	KLHDC4	ENSG00000104731.14	ENST00000567298.5:ENST00000270583.10:ENST00000347925.9:ENST00000353170.9:ENST00000562155.5:ENST00000622456.4:ENST00000562261.1:ENST00000566661.5:ENST00000564484.5:ENST00000565328.5:ENST00000569747.5:ENST00000564396.5:ENST00000568502.1:ENST00000561825.1:ENST00000568338.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	34	2	1.97143	2.05423	2.13703	0.0797592	0.0398704	0.19979	0.161534
chr3	43492722	43492822	1674141	0	-	0.38	(0.378,0.408]	chr3	170972	596	INTRON	INTRON	ANO10	ENSG00000160746.13	ENST00000292246.8:ENST00000350459.8:ENST00000396091.7:ENST00000414522.6:ENST00000451430.6:ENST00000448045.1	protein_coding	protein_coding	protein_coding	protein_coding	3	34	2	1.97143	2.05423	2.13703	0.0797592	0.0398704	0.19979	0.161534
chr21	39222126	39222225	7464598	0	-	0.383838	(0.378,0.408]	chr21	760426	31	INTRON	INTRON	BRWD1	ENSG00000185658.14	ENST00000333229.6:ENST00000342449.8:ENST00000446924.5:ENST00000380800.7:ENST00000424441.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	63	2	1.84831	2.0542	2.26009	0.0188651	0.0172621	0.111749	0.108861
chr7	119722048	119722148	3628558	0	-	0.43	(0.408,0.44]	chr7	337319	167	INTRON	INTRON	LINC02476	ENSG00000225546.6	ENST00000660268.1:ENST00000431071.5	lncRNA	lncRNA	lncRNA	lncRNA	15	155	2	1.92664	2.054195	2.18175	0.00298892	0.00158235	0.0503738	0.0362856
chr4	68313609	68313707	2154503	0	-	0.387755	(0.378,0.408]	chr4	212203	34	UTR3	UTR3:EXON_MRNA	YTHDC1	ENSG00000083896.13	ENST00000344157.9:ENST00000355665.7:ENST00000579690.5	protein_coding	protein_coding	protein_coding	protein_coding	7	70	2	1.63086	2.05419	2.47752	0.0252353	0.0092831	0.133676	0.0817766
chr10	125064621	125064721	4713375	0	-	0.38	(0.378,0.408]	chr10	434897	251	INTRON	INTRON	CTBP2	ENSG00000175029.17	ENST00000337195.9:ENST00000411419.6:ENST00000494626.6:ENST00000531469.5:ENST00000460976.5:ENST00000476817.1:ENST00000530884.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	58	2	2.04292	2.054135	2.06535	0.0326035	0.0159849	0.145164	0.101453
chr1	50728770	50728870	449936	0	-	0.35	(0.32,0.35]	chr1	54237	225	INTRON	INTRON	FAF1	ENSG00000185104.21	ENST00000396153.7:ENST00000487898.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	40	2	1.88909	2.05413	2.21917	0.0641245	0.0553737	0.199279	0.165463
chr7	111171618	111171718	3620198	0	-	0.34	(0.32,0.35]	chr7	337093	2077	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	40	2	1.88909	2.05413	2.21917	0.0641245	0.0553737	0.199279	0.165463
chr9	131474353	131474453	4217789	0	+	0.38	(0.378,0.408]	chr9	386804	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	PRRC2B	ENSG00000288701.1	ENST00000684596.1:ENST00000683519.1:ENST00000682501.1	protein_coding	protein_coding	protein_coding	protein_coding	6	63	2	1.71374	2.05409	2.39444	0.0274158	0.0122858	0.136498	0.091087
chrX	40670675	40670773	7806101	0	-	0.612245	(0.57,1]	chrX	795899	35	INTRON	INTRON	MED14	ENSG00000180182.11	ENST00000324817.6	protein_coding	protein_coding	protein_coding	protein_coding	8	42	2	1.64729	2.0540599999999998	2.46083	0.0231375	0.00255312	0.118148	0.0466386
chr1	241638202	241638298	666514	0	-	0.46875	(0.44,0.476]	chr1	79093	18	INTRON	INTRON	OPN3:CHML	ENSG00000054277.14:ENSG00000203668.3	ENST00000366554.3:ENST00000490673.5:ENST00000469376.5:ENST00000463155.5:ENST00000478849.1:ENST00000366553.3:ENST00000638018.1:ENST00000638160.1:ENST00000638121.1:ENST00000636025.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	93	2	1.63371	2.05404	2.47437	0.0271664	0.00117531	0.123904	0.0316592
chr17	66405013	66405113	6663322	0	+	0.59	(0.57,1]	chr17	650326	408	INTRON	INTRON	PRKCA	ENSG00000154229.12	ENST00000413366.8:ENST00000578063.5:ENST00000284384.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	32	2	1.72406	2.053985	2.38391	0.0261443	0.0104374	0.122221	0.0902296
chr9	131178710	131178810	4216176	0	+	0.45	(0.44,0.476]	chr9	386629	3	SS5_PROX	SS5_PROX:INTRON	NUP214	ENSG00000126883.19	ENST00000695497.1:ENST00000695498.1:ENST00000695496.1:ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000525980.5:ENST00000526346.5:ENST00000531929.5:ENST00000651334.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	39	386	2	2.03143	2.053985	2.07654	6.05996e-4	1.63518e-4	0.0226059	0.0110057
chr17	30742217	30742314	6589909	0	+	0.257732	[0,0.28]	chr17	640854	21	INTRON	INTRON	SUZ12P1	ENSG00000264538.7	ENST00000578070.5:ENST00000579526.5:ENST00000690405.1:ENST00000497969.6:ENST00000578195.6:ENST00000582557.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	3	47	2	1.8986	2.053935	2.20927	0.0794763	0.0531512	0.19979	0.179787
chr10	75226567	75226666	4464502	0	+	0.464646	(0.44,0.476]	chr10	411844	38	INTRON	INTRON	VDAC2	ENSG00000165637.14	ENST00000543351.5:ENST00000298468.9:ENST00000332211.11:ENST00000313132.8	protein_coding	protein_coding	protein_coding	protein_coding	9	93	2	1.84794	2.0539300000000003	2.25992	0.0127847	0.00324123	0.0926667	0.0524329
chr2	235519727	235519827	1041592	0	+	0.36	(0.35,0.378]	chr2	111217	245	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	80	2	1.9392	2.0539	2.1686	0.0126486	0.0116706	0.0982897	0.0891208
chr9	37133338	37133438	4117786	0	+	0.37	(0.35,0.378]	chr9	375372	60	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000322831.6:ENST00000461038.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	80	2	1.9392	2.0539	2.1686	0.0126486	0.0116706	0.0982897	0.0891208
chr12	111421075	111421175	5227739	0	+	0.35	(0.32,0.35]	chr12	495494	18	INTRON	INTRON	SH2B3	ENSG00000111252.11	ENST00000341259.7:ENST00000550925.2	protein_coding	protein_coding	protein_coding	protein_coding	4	52	2	2.01768	2.053865	2.09005	0.0361337	0.0330483	0.152563	0.133816
chr10	68338888	68338972	4440833	0	+	0.27381	[0,0.28]	chr10	409492	2	EXON_LNCRNA	EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HNRNPH3	ENSG00000096746.18	ENST00000469172.5:ENST00000461310.5:ENST00000265866.12:ENST00000480987.5:ENST00000486854.5:ENST00000354695.5:ENST00000481819.5:ENST00000491200.5:ENST00000490442.5:ENST00000478698.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	101	2	1.9362	2.053845	2.17149	0.0308079	0.0103279	0.13151	0.0894692
chr16	18920646	18920745	6458053	0	-	0.474747	(0.44,0.476]	chr16	622895	91	INTRON	INTRON	SMG1	ENSG00000157106.18	ENST00000446231.7:ENST00000532700.6:ENST00000569122.1	protein_coding	protein_coding	protein_coding	protein_coding	5	53	2	2.02558	2.053845	2.08211	0.0363567	0.0130715	0.138959	0.0996047
chr22	20570316	20570415	7480000	0	+	0.40404	(0.378,0.408]	chr22	763022	13	INTRON	INTRON	MED15	ENSG00000099917.17	ENST00000433831.5:ENST00000292733.11:ENST00000263205.11:ENST00000406969.5:ENST00000382974.6:ENST00000492381.5:ENST00000478831.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	13	138	2	1.99288	2.053845	2.11481	0.00540773	0.00162221	0.0644789	0.0369859
chr1	149884837	149884931	549578	0	-	0.425532	(0.408,0.44]	chr1	64526	5	UTR3	UTR3:EXON_MRNA	H2BC21	ENSG00000184678.11	ENST00000369155.4	protein_coding	protein_coding	protein_coding	protein_coding	10	104	2	1.32496	2.0538049999999997	2.78265	0.0566224	2.28487e-4	0.167389	0.0133228
chr10	68043805	68043903	4637630	0	-	0.316327	(0.28,0.32]	chr10	426430	40	INTRON	INTRON	HERC4	ENSG00000148634.16	ENST00000373700.9:ENST00000412272.6:ENST00000395198.7:ENST00000473533.6:ENST00000427635.6:ENST00000513996.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	56	2	1.86684	2.053725	2.24061	0.0605813	0.0194267	0.171122	0.119831
chr21	46443143	46443238	7422469	0	+	0.484211	(0.476,0.515]	chr21	756954	7	EXON_MRNA	EXON_MRNA:INTRON	PCNT	ENSG00000160299.18	ENST00000695558.1:ENST00000359568.10:ENST00000480896.5:ENST00000695527.1:ENST00000695528.1:ENST00000695529.1:ENST00000695530.1:ENST00000418394.2:ENST00000695532.1:ENST00000695531.1:ENST00000695533.1:ENST00000695534.1:ENST00000695535.1:ENST00000695536.1:ENST00000695537.1:ENST00000465356.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	13	133	2	2.00877	2.053725	2.09868	0.00338095	0.00250696	0.0517233	0.0464713
chr6	17687696	17687795	3066021	0	-	0.282828	(0.28,0.32]	chr6	284866	116	INTRON	INTRON	NUP153	ENSG00000124789.12	ENST00000613258.4:ENST00000537253.5:ENST00000262077.3	protein_coding	protein_coding	protein_coding	protein_coding	4	56	2	1.86684	2.053725	2.24061	0.0605813	0.0194267	0.171122	0.119831
chr17	78194368	78194467	6682019	0	+	0.414141	(0.408,0.44]	chr17	652698	12	INTRON	INTRON	AFMID	ENSG00000183077.16	ENST00000591256.5:ENST00000409257.10:ENST00000327898.9:ENST00000591952.5:ENST00000588800.5:ENST00000588199.5:ENST00000589107.5:ENST00000592988.5:ENST00000589256.5:ENST00000586542.5:ENST00000586731.1:ENST00000591538.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	81	2	1.65739	2.0537099999999997	2.45003	0.012928	0.00990006	0.0990564	0.0838372
chr1	71063587	71063686	482843	0	-	0.363636	(0.35,0.378]	chr1	57837	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ZRANB2	ENSG00000132485.14	ENST00000370920.8:ENST00000477096.1:ENST00000254821.10	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	30	333	2	1.67459	2.05368	2.43277	0.0054748	4.18939e-5	0.0648867	0.00524674
chr7	65069793	65069892	3321698	0	+	0.474747	(0.44,0.476]	chr7	308837	12	EXON_MRNA	EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CCT6P3	ENSG00000234585.6	ENST00000419314.5:ENST00000426828.5:ENST00000452026.1	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript:transcribed_unprocessed_pseudogene	5	53	2	1.81595	2.053605	2.29126	0.0317953	0.0165638	0.14477	0.102621
chr8	30108623	30108723	3726764	0	+	0.45	(0.44,0.476]	chr8	346380	2	INTRON	INTRON	LEPROTL1	ENSG00000104660.19	ENST00000520682.5:ENST00000442880.6:ENST00000523116.5:ENST00000520739.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	53	2	1.81595	2.053605	2.29126	0.0317953	0.0165638	0.14477	0.102621
chr8	92828940	92829040	3990395	0	-	0.4	(0.378,0.408]	chr8	365358	425	INTRON	INTRON	FLJ46284	ENSG00000248858.7	ENST00000504861.2	lncRNA	lncRNA	lncRNA	lncRNA	6	53	2	1.50417	2.053565	2.60296	0.0384675	0.0267851	0.159169	0.123349
chr16	10411376	10411476	6286531	0	+	0.43	(0.408,0.44]	chr16	601961	185	INTRON	INTRON	ATF7IP2	ENSG00000166669.14	ENST00000564797.5:ENST00000396559.5:ENST00000396560.6:ENST00000562527.5:ENST00000561932.5:ENST00000543967.5:ENST00000562102.6:ENST00000535850.5:ENST00000569900.5:ENST00000569939.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	62	2	1.49523	2.053465	2.6117	0.0534846	0.00555224	0.180041	0.0648867
chr15	63823926	63824026	6200805	0	-	0.33	(0.32,0.35]	chr15	591445	430	INTRON	INTRON	HERC1	ENSG00000103657.14	ENST00000443617.7:ENST00000561400.1:ENST00000559886.1:ENST00000558532.1:ENST00000560462.1:ENST00000560316.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	46	2	1.72898	2.0534600000000003	2.37794	0.0498601	0.0425433	0.161951	0.156383
chr4	26383974	26384065	1937309	0	+	0.494505	(0.476,0.515]	chr4	194386	2	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RBPJ	ENSG00000168214.22	ENST00000512351.5:ENST00000681799.1:ENST00000681403.1:ENST00000342295.6:ENST00000512671.6:ENST00000506956.5:ENST00000345843.8:ENST00000361572.10:ENST00000514380.5:ENST00000514807.5:ENST00000348160.9:ENST00000681506.1:ENST00000509158.6:ENST00000691085.1:ENST00000692303.1:ENST00000681856.1:ENST00000513182.5:ENST00000681025.1:ENST00000681679.1:ENST00000680210.1:ENST00000355476.8:ENST00000680140.1:ENST00000511401.5:ENST00000680511.1:ENST00000510778.7:ENST00000679698.1:ENST00000679469.1:ENST00000681484.1:ENST00000505958.6:ENST00000507561.5:ENST00000514730.5:ENST00000507574.5:ENST00000514675.5:ENST00000515573.5:ENST00000689192.1:ENST00000680928.1:ENST00000681260.1:ENST00000681093.1:ENST00000504423.2:ENST00000511546.5:ENST00000342320.8:ENST00000504907.5:ENST00000511451.5:ENST00000681264.1:ENST00000504938.1:ENST00000680204.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	41	2	1.96833	2.053435	2.13854	0.0776563	0.0195007	0.196285	0.119967
chr16	2447286	2447383	6278104	0	+	0.556701	(0.515,0.57]	chr16	600409	13	INTRON	INTRON	CCNF	ENSG00000162063.13	ENST00000293968.11:ENST00000397066.9:ENST00000564236.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	52	2	1.56838	2.053415	2.53845	0.0424458	0.00632226	0.161763	0.0687526
chr11	9294462	9294560	4909232	0	-	0.265306	[0,0.28]	chr11	460149	56	INTRON	INTRON	TMEM41B	ENSG00000166471.11	ENST00000524543.5:ENST00000528080.6:ENST00000299596.8:ENST00000611268.4:ENST00000527813.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	89	2	1.90035	2.053385	2.20642	0.0280845	0.0173564	0.125065	0.112318
chr13	113469450	113469550	5652616	0	-	0.49	(0.476,0.515]	chr13	538698	62	INTRON	INTRON	DCUN1D2	ENSG00000150401.15	ENST00000478244.6:ENST00000332592.7:ENST00000375403.6:ENST00000438545.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	45	2	1.8388	2.053345	2.26789	0.0564473	0.0176567	0.184423	0.105233
chr16	2261582	2261679	6431627	0	-	0.360825	(0.35,0.378]	chr16	618787	30	INTRON	INTRON	RNPS1	ENSG00000205937.12	ENST00000397086.6:ENST00000566458.5:ENST00000320225.10:ENST00000566397.5:ENST00000565678.5:ENST00000561718.5:ENST00000568631.5:ENST00000569598.6:ENST00000301730.12:ENST00000567147.5:ENST00000565870.5:ENST00000561518.5:ENST00000564311.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	80	2	1.74826	2.05332	2.35838	0.0279529	0.00468156	0.124524	0.0631419
chr17	50754624	50754724	6627347	0	+	0.34	(0.32,0.35]	chr17	647268	25	UTR3	UTR3:EXON_MRNA	LUC7L3	ENSG00000108848.16	ENST00000505658.6	protein_coding	protein_coding	protein_coding	protein_coding	8	100	2	1.9587	2.053315	2.14793	0.0110079	0.00997254	0.0927187	0.0842795
chr17	75216836	75216930	6674377	0	+	0.351064	(0.35,0.378]	chr17	651375	6	INTRON	INTRON	NUP85	ENSG00000125450.11	ENST00000245544.9:ENST00000583948.5:ENST00000579324.5:ENST00000449421.6:ENST00000581104.5:ENST00000579298.5:ENST00000578830.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	11	124	2	1.85213	2.05331	2.25449	0.0137208	0.00124584	0.0949306	0.0328543
chr2	173949282	173949382	1268910	0	-	0.28	[0,0.28]	chr2	134213	145	INTRON	INTRON	SP3	ENSG00000172845.18	ENST00000650743.1:ENST00000310015.12:ENST00000416195.1:ENST00000418194.7:ENST00000652005.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	78	2	1.94204	2.0532	2.16436	0.0544139	0.0120935	0.164972	0.0962599
chr17	20892129	20892229	6576301	0	+	0.38	(0.378,0.408]	chr17	639380	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	CCDC144NL-AS1	ENSG00000233098.10	ENST00000577537.5:ENST00000692759.1:ENST00000443508.8:ENST00000692309.1:ENST00000439794.6:ENST00000417232.6:ENST00000583962.2:ENST00000582324.5:ENST00000577860.5	lncRNA	lncRNA	lncRNA	lncRNA	7	60	2	1.57136	2.053195	2.53503	0.0319942	0.0233757	0.13174	0.128037
chr13	110903176	110903275	5650527	0	-	0.393939	(0.378,0.408]	chr13	538370	21	INTRON	INTRON	ANKRD10	ENSG00000088448.14	ENST00000267339.6:ENST00000489973.6:ENST00000310847.8:ENST00000465753.1:ENST00000494859.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	35	320	2	1.49413	2.053165	2.6122	0.00434819	9.60207e-5	0.0602303	0.00877604
chr11	34080065	34080165	4767941	0	+	0.54	(0.515,0.57]	chr11	440983	3	SS5_PROX	SS5_PROX:INTRON	CAPRIN1	ENSG00000135387.21	ENST00000341394.9:ENST00000528856.5:ENST00000389645.7:ENST00000532820.5:ENST00000530820.5:ENST00000529307.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	53	2	1.77795	2.053155	2.32836	0.0222234	0.0126662	0.116128	0.0982897
chr16	1863995	1864094	6430274	0	-	0.525253	(0.515,0.57]	chr16	618392	15	INTRON	INTRON	MEIOB	ENSG00000162039.17	ENST00000325962.9:ENST00000470044.5:ENST00000397344.7:ENST00000496541.6:ENST00000460494.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	53	2	1.77795	2.053155	2.32836	0.0222234	0.0126662	0.116128	0.0982897
chr1	156314002	156314101	566460	0	-	0.515152	(0.476,0.515]	chr1	67981	14	INTRON	INTRON	CCT3	ENSG00000163468.15	ENST00000295688.8:ENST00000368258.7:ENST00000368259.6:ENST00000368261.7:ENST00000368262.7:ENST00000472765.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	65	2	1.86014	2.05313	2.24612	0.0277606	0.00799949	0.137011	0.0766625
chr15	63608802	63608894	6198544	0	-	0.358696	(0.35,0.378]	chr15	590989	3	UTR3	UTR3:EXON_MRNA	HERC1	ENSG00000103657.14	ENST00000443617.7	protein_coding	protein_coding	protein_coding	protein_coding	8	89	2	1.57247	2.0530850000000003	2.5337	0.0350068	0.0022093	0.137535	0.0435144
chr2	144514650	144514750	1241758	0	-	0.36	(0.35,0.378]	chr2	131754	3	INTRON	INTRON	ZEB2	ENSG00000169554.23	ENST00000636471.1:ENST00000627532.3:ENST00000638128.1:ENST00000637304.1:ENST00000419938.5:ENST00000409487.7:ENST00000636732.2:ENST00000636026.2:ENST00000675069.1:ENST00000689298.1:ENST00000539609.7:ENST00000558170.6:ENST00000303660.8:ENST00000427902.5:ENST00000637267.2:ENST00000392861.6:ENST00000431672.4:ENST00000409211.5:ENST00000465308.5:ENST00000434448.5:ENST00000472146.5:ENST00000461784.3:ENST00000476394.5:ENST00000637591.2:ENST00000479735.1:ENST00000453352.5:ENST00000435831.5:ENST00000444559.5:ENST00000630572.2:ENST00000484313.3:ENST00000629955.1:ENST00000465070.5:ENST00000636445.1:ENST00000629520.2:ENST00000470879.5:ENST00000462355.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	115	2	1.97729	2.05308	2.12887	0.00688871	0.00471873	0.0750118	0.0600445
chr7	139106427	139106526	3656388	0	-	0.444444	(0.44,0.476]	chr7	339450	163	INTRON	INTRON	ZC3HAV1	ENSG00000105939.14	ENST00000242351.10:ENST00000464606.5:ENST00000680309.1:ENST00000471652.1	protein_coding	protein_coding	protein_coding	protein_coding	5	53	2	1.55662	2.05303	2.54944	0.0688347	0.00591346	0.184298	0.0694038
chrX	13314288	13314388	7622193	0	+	0.47	(0.44,0.476]	chrX	780272	4	SS3_PROX	SS3_PROX:INTRON	GS1-600G8.3	ENSG00000231216.1	ENST00000431486.1	lncRNA	lncRNA	lncRNA	lncRNA	5	53	2	1.55662	2.05303	2.54944	0.0688347	0.00591346	0.184298	0.0694038
chr21	33549075	33549175	7397487	0	+	0.46	(0.44,0.476]	chr21	753514	2	SS3_PROX	SS3_PROX:INTRON	SON	ENSG00000159140.22	ENST00000356577.10:ENST00000381692.6:ENST00000695559.1:ENST00000455528.5:ENST00000300278.8:ENST00000381679.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	103	2	1.90372	2.05299	2.20226	0.0103521	0.00238044	0.085045	0.0449397
chr16	81447338	81447438	6405022	0	+	0.62	(0.57,1]	chr16	615026	14	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8	protein_coding	protein_coding	protein_coding	protein_coding	4	22	2	1.74185	2.05298	2.36411	0.0408868	0.0401765	0.161534	0.143911
chr18	23358956	23359055	6957310	0	-	0.585859	(0.57,1]	chr18	688171	19	INTRON	INTRON	TMEM241	ENSG00000134490.14	ENST00000581444.5:ENST00000383233.8:ENST00000473688.5:ENST00000477053.5:ENST00000583048.5:ENST00000460322.5:ENST00000542162.5:ENST00000578520.5:ENST00000482411.5:ENST00000497608.5:ENST00000577531.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	22	2	1.74185	2.05298	2.36411	0.0408868	0.0401765	0.161534	0.143911
chr2	61533173	61533271	1131180	0	-	0.285714	(0.28,0.32]	chr2	121638	37	INTRON	INTRON	XPO1	ENSG00000082898.19	ENST00000676553.1:ENST00000677556.1:ENST00000677814.1:ENST00000676771.1:ENST00000677803.1:ENST00000677239.1:ENST00000678790.1:ENST00000677928.1:ENST00000678182.1:ENST00000677150.1:ENST00000678172.1:ENST00000678360.1:ENST00000678081.1:ENST00000676889.1:ENST00000676783.1:ENST00000679035.1:ENST00000677422.1:ENST00000677417.1:ENST00000677813.1:ENST00000676999.1:ENST00000676667.1:ENST00000678263.1:ENST00000678877.1:ENST00000677933.1:ENST00000680228.1:ENST00000401558.7:ENST00000428210.5:ENST00000677290.1:ENST00000677850.1:ENST00000451765.6:ENST00000676789.1:ENST00000678741.1:ENST00000404992.6:ENST00000406957.5:ENST00000443240.5:ENST00000420673.6:ENST00000481214.1:ENST00000495003.1:ENST00000449444.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	34	366	2	1.61003	2.05296	2.49589	0.00324508	6.14643e-4	0.0524329	0.0228633
chr14	102631811	102631911	5822925	0	+	0.56	(0.515,0.57]	chr14	552490	381	INTRON	INTRON	RCOR1	ENSG00000089902.10	ENST00000262241.7	protein_coding	protein_coding	protein_coding	protein_coding	8	70	2	1.59629	2.05291	2.50953	0.0274344	0.0023952	0.136554	0.0440612
chr12	56639879	56639958	5335747	0	-	0.443038	(0.44,0.476]	chr12	510117	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ATP5F1B	ENSG00000110955.9	ENST00000262030.8:ENST00000548474.2:ENST00000547808.5:ENST00000547250.5:ENST00000551020.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	27	276	2	1.81373	2.05287	2.29201	0.00639373	5.05114e-5	0.0694378	0.00582942
chr7	43714645	43714745	3526230	0	-	0.34	(0.32,0.35]	chr7	328785	28	INTRON	INTRON	COA1	ENSG00000106603.20	ENST00000415076.6:ENST00000446330.6:ENST00000446564.5:ENST00000438444.5:ENST00000223336.11:ENST00000310564.10:ENST00000415798.5:ENST00000431651.5:ENST00000451651.5:ENST00000418140.5:ENST00000448704.5:ENST00000470156.1:ENST00000457939.1:ENST00000420441.1:ENST00000478504.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	71	2	1.88141	2.05285	2.22429	0.0226421	0.0161424	0.117557	0.109464
chr7	130201051	130201150	3638710	0	-	0.333333	(0.32,0.35]	chr7	338395	79	INTRON	INTRON	TMEM209	ENSG00000146842.17	ENST00000397622.7:ENST00000473456.5:ENST00000462753.5	protein_coding	protein_coding	protein_coding	protein_coding	6	71	2	1.88141	2.05285	2.22429	0.0226421	0.0161424	0.117557	0.109464
chr2	15349697	15349797	1071015	0	-	0.5	(0.476,0.515]	chr2	114279	186	INTRON	INTRON	NBAS	ENSG00000151779.13	ENST00000281513.10:ENST00000442506.5	protein_coding	protein_coding	protein_coding	protein_coding	5	47	2	1.78315	2.0527249999999997	2.3223	0.0519312	0.0215899	0.159306	0.123836
chr10	116890551	116890651	4699336	0	-	0.33	(0.32,0.35]	chr10	433605	36	INTRON	INTRON	SHTN1	ENSG00000187164.20	ENST00000355371.9:ENST00000615301.4:ENST00000260777.14:ENST00000497044.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	71	2	1.68188	2.0526999999999997	2.42352	0.031521	0.0122807	0.144381	0.091087
chr17	31963949	31964049	6595947	0	+	0.33	(0.32,0.35]	chr17	641554	159	INTRON	INTRON	SUZ12	ENSG00000178691.11	ENST00000322652.10:ENST00000580398.1	protein_coding	protein_coding	protein_coding	protein_coding	6	71	2	1.68188	2.0526999999999997	2.42352	0.031521	0.0122807	0.144381	0.091087
chr8	37885599	37885699	3935806	0	-	0.34	(0.32,0.35]	chr8	360576	76	INTRON	INTRON	RAB11FIP1	ENSG00000156675.16	ENST00000330843.9:ENST00000287263.8:ENST00000522727.5	protein_coding	protein_coding	protein_coding	protein_coding	6	71	2	1.68188	2.0526999999999997	2.42352	0.031521	0.0122807	0.144381	0.091087
chr16	21853205	21853300	6461769	0	-	0.442105	(0.44,0.476]	chr16	623445	8	INTRON	INTRON	NPIPB4	ENSG00000185864.18	ENST00000415645.6:ENST00000682606.1:ENST00000542133.5:ENST00000539318.5:ENST00000341400.11:ENST00000518761.8:ENST00000520808.6:ENST00000536041.5:ENST00000529969.1:ENST00000540103.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	10	98	2	1.28614	2.052675	2.81921	0.0497218	7.10539e-4	0.17488	0.0243894
chr12	33434628	33434727	5304381	0	-	0.515152	(0.476,0.515]	chr12	504838	19	INTRON	INTRON	SYT10	ENSG00000110975.8	ENST00000228567.7:ENST00000539102.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	61	2	1.67283	2.052625	2.43242	0.0332283	0.0091895	0.134145	0.0855292
chr7	151093240	151093340	3448419	0	+	0.47	(0.44,0.476]	chr7	322165	23	INTRON	INTRON	AGAP3	ENSG00000133612.19	ENST00000490097.5:ENST00000463381.5:ENST00000397238.7:ENST00000622464.4:ENST00000479901.5:ENST00000473312.5:ENST00000469901.5:ENST00000476375.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	68	2	1.45853	2.05261	2.64669	0.0470887	0.0040295	0.152251	0.0578376
chr7	102861931	102862030	3590238	0	-	0.40404	(0.378,0.408]	chr7	335159	67	INTRON	INTRON	FBXL13	ENSG00000161040.18	ENST00000694871.1:ENST00000694870.1:ENST00000448002.6:ENST00000379305.7:ENST00000440067.3:ENST00000456695.6:ENST00000313221.8:ENST00000436908.5:ENST00000455112.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	55	2	2.04622	2.052595	2.05897	0.0339294	0.0149927	0.134508	0.107704
chr21	6326073	6326172	7364834	0	+	0.434343	(0.408,0.44]	chr21	751664	16	INTRON	INTRON	ENSG00000278903	ENSG00000278903.4	ENST00000688458.1:ENST00000689306.1:ENST00000692898.1:ENST00000624576.3:ENST00000623738.3:ENST00000692237.1:ENST00000692046.1:ENST00000689354.1:ENST00000624165.1	lncRNA	lncRNA	lncRNA	lncRNA	6	66	2	1.8749	2.052565	2.23023	0.0264246	0.0087201	0.133676	0.0788605
chr17	1451692	1451791	6699926	0	-	0.545455	(0.515,0.57]	chr17	655571	142	INTRON	INTRON	CRK	ENSG00000167193.8	ENST00000398970.5:ENST00000300574.3:ENST00000574295.1:ENST00000572145.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	36	2	1.75372	2.052485	2.35125	0.0436431	0.0386904	0.162255	0.14279
chr19	48617118	48617216	7199068	0	-	0.561224	(0.515,0.57]	chr19	729801	4	EXON_MRNA	EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPL18	ENSG00000063177.13	ENST00000552347.5:ENST00000547897.5:ENST00000551749.5:ENST00000552588.5:ENST00000549920.6:ENST00000550645.5:ENST00000084795.9:ENST00000547892.1:ENST00000546623.5:ENST00000549370.5:ENST00000549273.5:ENST00000550973.5:ENST00000552705.5:ENST00000552851.1:ENST00000550671.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:non_stop_decay:nonsense_mediated_decay	4	36	2	1.75372	2.052485	2.35125	0.0436431	0.0386904	0.162255	0.14279
chr1	167948111	167948211	248603	0	+	0.27	[0,0.28]	chr1	29536	105	INTRON	INTRON	DCAF6	ENSG00000143164.16	ENST00000450548.5:ENST00000470919.5:ENST00000432587.6:ENST00000367843.7:ENST00000470721.5:ENST00000367840.4:ENST00000312263.10:ENST00000455334.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	100	2	1.86436	2.052445	2.24053	0.0256186	0.0134322	0.120376	0.101281
chr16	29552132	29552223	6471114	0	-	0.395604	(0.378,0.408]	chr16	625247	4	INTRON	INTRON	ENSG00000288632:SMG1P2	ENSG00000288632.1:ENSG00000205534.6	ENST00000675579.1:ENST00000566127.1	lncRNA	lncRNA	lncRNA:transcribed_unprocessed_pseudogene	lncRNA:transcribed_unprocessed_pseudogene	5	55	2	1.89251	2.052445	2.21238	0.0251428	0.0218124	0.133404	0.11491
chr17	42774977	42775069	6612523	0	+	0.380435	(0.378,0.408]	chr17	644475	4	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	VPS25	ENSG00000131475.7	ENST00000253794.7:ENST00000589219.1:ENST00000589577.1:ENST00000590339.5:ENST00000589520.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	55	2	1.89251	2.052445	2.21238	0.0251428	0.0218124	0.133404	0.11491
chr12	121324473	121324572	5436893	0	-	0.323232	(0.32,0.35]	chr12	519869	35	INTRON	INTRON	ANAPC5	ENSG00000089053.13	ENST00000261819.8:ENST00000535641.5:ENST00000541887.5:ENST00000534976.5:ENST00000441917.6:ENST00000539079.5:ENST00000544314.5:ENST00000535482.1:ENST00000545218.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	81	2	1.96868	2.05244	2.1362	0.0291083	0.00749728	0.128029	0.0773151
chr19	2204851	2204950	6996589	0	+	0.626263	(0.57,1]	chr19	693473	17	INTRON	INTRON	DOT1L	ENSG00000104885.19	ENST00000398665.8:ENST00000686010.1	protein_coding	protein_coding	protein_coding	protein_coding	7	38	2	1.94024	2.05227	2.1643	0.0116325	0.00941704	0.0889284	0.0861183
chr1	25459491	25459591	48238	0	+	0.54	(0.515,0.57]	chr1	5949	2	INTRON	INTRON	MACO1	ENSG00000204178.11	ENST00000399766.7:ENST00000374343.5:ENST00000647928.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	44	2	1.49552	2.0522549999999997	2.60899	0.0385038	0.0232669	0.159277	0.118148
chr2	55411740	55411839	1124317	0	-	0.343434	(0.32,0.35]	chr2	120584	52	INTRON	INTRON	CCDC88A	ENSG00000115355.18	ENST00000263630.13:ENST00000436346.7:ENST00000336838.10:ENST00000642200.1:ENST00000413716.7:ENST00000643413.1:ENST00000647401.1:ENST00000645311.1:ENST00000646796.1:ENST00000645571.1:ENST00000645477.1:ENST00000645072.1:ENST00000644890.1:ENST00000644630.1:ENST00000647098.1:ENST00000642890.1:ENST00000647517.1:ENST00000645031.1:ENST00000645529.1:ENST00000644033.1:ENST00000644193.1:ENST00000647341.1:ENST00000644127.1:ENST00000644157.1:ENST00000471947.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	63	2	1.8526	2.052165	2.25173	0.0332438	0.0180122	0.134145	0.114436
chr1	179863193	179863292	593321	0	-	0.424242	(0.408,0.44]	chr1	71105	43	UTR3	UTR3:EXON_MRNA:INTRON	TOR1AIP2	ENSG00000169905.13	ENST00000367612.7:ENST00000609928.6:ENST00000482587.5	protein_coding	protein_coding	protein_coding	protein_coding	8	84	2	1.94531	2.052125	2.15894	0.0136489	0.00504142	0.0949306	0.0646039
chr18	9940547	9940646	6873615	0	+	0.333333	(0.32,0.35]	chr18	680892	31	INTRON	INTRON	VAPA	ENSG00000101558.14	ENST00000400000.7:ENST00000340541.4:ENST00000584796.5:ENST00000583879.5:ENST00000583475.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	53	2	1.59364	2.0521249999999998	2.51061	0.0413426	0.0364463	0.161557	0.138959
chr7	107264860	107264959	3610025	0	-	0.343434	(0.32,0.35]	chr7	336648	61	INTRON	INTRON	COG5	ENSG00000164597.15	ENST00000297135.9:ENST00000347053.8:ENST00000393603.7	protein_coding	protein_coding	protein_coding	protein_coding	5	53	2	1.59364	2.0521249999999998	2.51061	0.0413426	0.0364463	0.161557	0.138959
chr4	126548714	126548814	2236196	0	-	0.36	(0.35,0.378]	chr4	219023	832	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	18	131	2	1.00449	2.052035	3.09958	0.0591172	8.54875e-4	0.189982	0.0267428
chr2	111829308	111829406	1214313	0	-	0.479592	(0.476,0.515]	chr2	129124	31	INTRON	INTRON	ANAPC1	ENSG00000153107.13	ENST00000427997.5:ENST00000341068.8	protein_coding	protein_coding	protein_coding	protein_coding	6	64	2	1.96833	2.0520300000000002	2.13573	0.0195007	0.0119549	0.119967	0.0899583
chr7	87180808	87180904	3345921	0	+	0.239583	[0,0.28]	chr7	311682	1	SS3_PROX	SS3_PROX:INTRON	DMTF1	ENSG00000135164.19	ENST00000413276.6:ENST00000447863.5:ENST00000579677.5:ENST00000425406.5:ENST00000547146.6:ENST00000579850.5:ENST00000331242.12:ENST00000432937.6:ENST00000584619.5:ENST00000394703.9:ENST00000412139.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	14	205	2	2.03737	2.0520199999999997	2.06667	0.00909913	0.002337	0.0809976	0.0442989
chr18	735229	735327	6939922	0	-	0.377551	(0.35,0.378]	chr18	686461	19	INTRON	INTRON	YES1	ENSG00000176105.14	ENST00000584307.5:ENST00000314574.5:ENST00000577961.5	protein_coding	protein_coding	protein_coding	protein_coding	10	113	2	1.87733	2.052	2.22667	0.012522	0.0022763	0.0925829	0.0437013
chr17	42470593	42470687	6611408	0	+	0.329787	(0.32,0.35]	chr17	644091	5	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	ATP6V0A1	ENSG00000033627.17	ENST00000393829.6:ENST00000588629.1:ENST00000343619.9:ENST00000537728.5:ENST00000588901.5:ENST00000264649.10:ENST00000585525.5:ENST00000544137.5:ENST00000589727.5:ENST00000592324.1:ENST00000587375.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	109	2	2.0516	2.0518549999999998	2.05211	0.0106769	0.00531074	0.0861859	0.0659476
chr2	38595027	38595127	1099699	0	-	0.54	(0.515,0.57]	chr2	117957	30	INTRON	INTRON	HNRNPLL	ENSG00000143889.16	ENST00000449105.8:ENST00000409636.5:ENST00000358367.8:ENST00000608859.5:ENST00000378915.7:ENST00000409328.5:ENST00000410076.5:ENST00000425682.1:ENST00000498516.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	68	2	1.18251	2.05183	2.92115	0.0690131	0.00110258	0.184298	0.03038
chr1	852951	853051	637	0	+	0.52	(0.515,0.57]	chr1	92	3	EXON_LNCRNA	EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	LINC01128	ENSG00000228794.11	ENST00000623808.4:ENST00000685334.1:ENST00000445118.7:ENST00000670780.1:ENST00000659124.2:ENST00000688309.1:ENST00000666741.1:ENST00000685764.1:ENST00000623070.5:ENST00000688008.1:ENST00000608189.6:ENST00000658846.1:ENST00000686238.1:ENST00000661237.2:ENST00000685566.1:ENST00000449005.6:ENST00000609009.6:ENST00000416570.6:ENST00000609139.6:ENST00000657837.1:ENST00000691316.1:ENST00000692194.1:ENST00000691234.1:ENST00000657175.1:ENST00000688420.1	lncRNA	lncRNA	lncRNA	lncRNA	6	55	2	1.94493	2.051795	2.15866	0.0204583	0.0100547	0.122204	0.0848452
chr2	15515748	15515848	1072706	0	-	0.33	(0.32,0.35]	chr2	114441	40	INTRON	INTRON	NBAS	ENSG00000151779.13	ENST00000281513.10	protein_coding	protein_coding	protein_coding	protein_coding	10	119	2	1.92705	2.051775	2.1765	0.0267365	0.00138523	0.123349	0.0341261
chr5	179622176	179622276	2779768	0	-	0.31	(0.28,0.32]	chr5	262332	2	SS3_PROX	SS3_PROX:INTRON	HNRNPH1	ENSG00000169045.17	ENST00000329433.11:ENST00000393432.9:ENST00000356731.9:ENST00000442819.6:ENST00000514332.5:ENST00000510411.5:ENST00000510678.5:ENST00000514731.5:ENST00000503105.5:ENST00000504779.6:ENST00000508103.5:ENST00000506721.5:ENST00000523137.5:ENST00000505811.5:ENST00000510431.5:ENST00000519056.5:ENST00000504348.5:ENST00000513225.5:ENST00000524180.5:ENST00000513972.5:ENST00000519707.5:ENST00000519455.5:ENST00000515158.5:ENST00000521116.5:ENST00000505087.1:ENST00000515714.5:ENST00000512273.5:ENST00000503664.1:ENST00000630639.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	24	272	2	1.59547	2.05175	2.50803	0.00534	8.15291e-4	0.0662892	0.0263761
chr17	27296588	27296686	6580556	0	+	0.428571	(0.408,0.44]	chr17	639598	18	INTRON	INTRON	WSB1	ENSG00000109046.15	ENST00000581440.5:ENST00000578312.5:ENST00000583742.1:ENST00000467843.6:ENST00000579733.5:ENST00000583193.5:ENST00000262394.7:ENST00000427287.6:ENST00000581185.5:ENST00000584354.1:ENST00000583786.5:ENST00000581089.1:ENST00000348811.6:ENST00000582208.1:ENST00000584114.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	18	155	2	1.53839	2.051695	2.565	0.00729241	0.00103673	0.0760899	0.0292734
chr9	37135037	37135137	4117803	0	+	0.32	(0.28,0.32]	chr9	375372	77	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000322831.6:ENST00000461038.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	19	248	2	1.82063	2.05169	2.28275	0.00750266	4.10505e-4	0.074841	0.0181365
chr6	17915855	17915954	3067834	0	-	0.454545	(0.44,0.476]	chr6	285100	173	INTRON	INTRON	KIF13A	ENSG00000137177.20	ENST00000378814.9:ENST00000259711.11:ENST00000378826.6:ENST00000378843.6:ENST00000636847.1:ENST00000507576.1:ENST00000505588.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	64	2	1.71574	2.051685	2.38763	0.045256	0.00394089	0.149888	0.0573041
chr4	126541916	126542016	2236128	0	-	0.42	(0.408,0.44]	chr4	219023	764	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	13	131	2	1.94531	2.0516199999999998	2.15793	0.0136489	6.71517e-4	0.0949306	0.0235155
chr2	70211229	70211328	1152066	0	-	0.333333	(0.32,0.35]	chr2	123027	19	UTR3	UTR3:EXON_MRNA:INTRON	C2orf42:TIA1	ENSG00000115998.8:ENSG00000116001.17	ENST00000470096.1:ENST00000415783.6:ENST00000433529.7:ENST00000282574.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	86	2	1.50457	2.05156	2.59855	0.0309203	0.00682041	0.143443	0.0712518
chr1	193171990	193172090	285121	0	+	0.56	(0.515,0.57]	chr1	32819	104	INTRON	INTRON	CDC73	ENSG00000134371.14	ENST00000649895.1:ENST00000643006.1:ENST00000367435.5:ENST00000650197.1:ENST00000648071.1:ENST00000635846.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	29	2	1.8707	2.051555	2.23241	0.0581268	0.0523213	0.188651	0.160182
chr16	20740145	20740241	6459067	0	-	0.520833	(0.515,0.57]	chr16	623048	7	INTRON	INTRON	THUMPD1	ENSG00000066654.14	ENST00000636554.1:ENST00000381337.6:ENST00000396083.7:ENST00000565248.1:ENST00000569768.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	29	2	1.8707	2.051555	2.23241	0.0581268	0.0523213	0.188651	0.160182
chr21	43877044	43877144	7413908	0	+	0.57	(0.515,0.57]	chr21	755688	93	INTRON	INTRON	AGPAT3	ENSG00000160216.21	ENST00000291572.13:ENST00000448287.5	protein_coding	protein_coding	protein_coding	protein_coding	3	29	2	1.8707	2.051555	2.23241	0.0581268	0.0523213	0.188651	0.160182
chr8	106402829	106402929	3843452	0	+	0.53	(0.515,0.57]	chr8	354143	428	INTRON	INTRON	OXR1	ENSG00000164830.19	ENST00000517566.7:ENST00000531443.6	protein_coding	protein_coding	protein_coding	protein_coding	3	29	2	1.8707	2.051555	2.23241	0.0581268	0.0523213	0.188651	0.160182
chr9	92289000	92289100	4287301	0	-	0.54	(0.515,0.57]	chr9	394263	3	SS5_PROX	SS5_PROX:INTRON	IARS1	ENSG00000196305.19	ENST00000375643.7:ENST00000443024.7:ENST00000447699.7:ENST00000683537.1:ENST00000684726.1:ENST00000683192.1:ENST00000683565.1:ENST00000682756.1:ENST00000684542.1:ENST00000683793.1:ENST00000683817.1:ENST00000682141.1:ENST00000682893.1:ENST00000684557.1:ENST00000498025.2:ENST00000682156.1:ENST00000627121.3:ENST00000683469.1:ENST00000683495.1:ENST00000682578.1:ENST00000682533.1:ENST00000472894.2:ENST00000684757.1:ENST00000684445.1:ENST00000683376.1:ENST00000683679.1:ENST00000683119.1:ENST00000490438.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	29	2	1.8707	2.051555	2.23241	0.0581268	0.0523213	0.188651	0.160182
chr10	28548450	28548550	4413958	0	+	0.42	(0.408,0.44]	chr10	407148	100	INTRON	INTRON	WAC	ENSG00000095787.24	ENST00000680735.1:ENST00000375664.8:ENST00000428935.6:ENST00000651598.1:ENST00000628285.3:ENST00000681112.1:ENST00000679570.1:ENST00000375646.5:ENST00000354911.9:ENST00000347934.8:ENST00000420266.6:ENST00000651885.1:ENST00000651441.1:ENST00000679398.1:ENST00000424454.5:ENST00000442148.6:ENST00000448193.5:ENST00000414108.6:ENST00000679428.1:ENST00000439676.5:ENST00000345541.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	96	2	1.74112	2.051485	2.36185	0.0133164	0.00575332	0.094512	0.0682011
chr9	37254789	37254889	4119005	0	+	0.32	(0.28,0.32]	chr9	375389	679	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000461038.5:ENST00000488607.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	69	2	1.81582	2.0514799999999997	2.28714	0.068122	0.00696126	0.184298	0.0754576
chr1	16347264	16347363	382568	0	-	0.494949	(0.476,0.515]	chr1	44888	315	INTRON	INTRON	FBXO42	ENSG00000037637.11	ENST00000375592.8	protein_coding	protein_coding	protein_coding	protein_coding	4	44	2	1.72558	2.051445	2.37731	0.0767648	0.0111793	0.196164	0.0937192
chr12	122593184	122593284	5241293	0	+	0.37	(0.35,0.378]	chr12	497801	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	KNTC1	ENSG00000184445.12	ENST00000450485.6:ENST00000333479.12:ENST00000535186.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	31	335	2	1.76288	2.05143	2.33998	0.00258487	1.61599e-4	0.0452934	0.0109728
chr1	85266651	85266749	497350	0	-	0.459184	(0.44,0.476]	chr1	58968	10	UTR3	UTR3:EXON_MRNA	BCL10	ENSG00000142867.14	ENST00000648566.1	protein_coding	protein_coding	protein_coding	protein_coding	4	41	2	1.61163	2.051375	2.49112	0.0598319	0.0315968	0.169278	0.144381
chr1	245076906	245077006	349467	0	+	0.58	(0.57,1]	chr1	40443	9	INTRON	INTRON	EFCAB2	ENSG00000203666.13	ENST00000366523.6:ENST00000391837.7:ENST00000366522.6:ENST00000497591.5:ENST00000447569.6:ENST00000473686.5:ENST00000366521.7:ENST00000487845.5:ENST00000549220.5:ENST00000495271.5:ENST00000425550.5:ENST00000551317.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	41	2	1.96816	2.051305	2.13445	0.0241482	0.00403305	0.12011	0.0578376
chr1	227293605	227293705	651472	0	-	0.5	(0.476,0.515]	chr1	77110	285	INTRON	INTRON	CDC42BPA	ENSG00000143776.20	ENST00000366766.8:ENST00000366769.7:ENST00000334218.9:ENST00000366767.7:ENST00000366764.8:ENST00000478573.6:ENST00000682551.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	61	2	1.48023	2.051295	2.62236	0.0559072	0.00517	0.18407	0.0631506
chr2	54981517	54981616	1120712	0	-	0.383838	(0.378,0.408]	chr2	120130	64	INTRON	INTRON	RTN4	ENSG00000115310.19	ENST00000394609.6:ENST00000404909.5:ENST00000394611.6:ENST00000317610.11:ENST00000357732.8:ENST00000337526.11:ENST00000357376.7:ENST00000405240.5:ENST00000486085.5:ENST00000438462.1	protein_coding	protein_coding	protein_coding	protein_coding	22	216	2	1.99203	2.05118	2.11033	0.00326474	5.28884e-4	0.0508595	0.0207241
chr1	92836550	92836609	162474	0	+	0.338983	(0.32,0.35]	chr1	17538	2	SS5_PROX	SS5_PROX:INTRON	RPL5	ENSG00000122406.14	ENST00000645300.1:ENST00000370321.8:ENST00000645119.1:ENST00000315741.5:ENST00000645908.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	64	2	1.96288	2.051165	2.13945	0.0254517	0.0239991	0.133676	0.119664
chr19	21739479	21739579	7159017	0	-	0.41	(0.408,0.44]	chr19	723706	111	INTRON	INTRON	ZNF100	ENSG00000197020.12	ENST00000358296.11:ENST00000305570.10:ENST00000594401.1	protein_coding	protein_coding	protein_coding	protein_coding	5	54	2	1.69566	2.051135	2.40661	0.0453922	0.011475	0.164236	0.0888882
chr7	32507673	32507773	3303355	0	+	0.36	(0.35,0.378]	chr7	306758	115	INTRON	INTRON	AVL9	ENSG00000105778.20	ENST00000485228.1:ENST00000318709.9:ENST00000459629.1:ENST00000409301.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	58	2	1.5118	2.05113	2.59046	0.0789277	0.00528327	0.198963	0.0656295
chr3	9991100	9991198	1362011	0	+	0.459184	(0.44,0.476]	chr3	143392	20	INTRON	INTRON	EMC3-AS1	ENSG00000180385.9	ENST00000692142.1:ENST00000366264.6:ENST00000693066.1:ENST00000326237.3:ENST00000440568.1:ENST00000438698.1:ENST00000424904.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	9	96	2	1.66775	2.051125	2.4345	0.0219883	0.00185115	0.123836	0.0388609
chr1	35870103	35870203	70505	0	+	0.51	(0.476,0.515]	chr1	9023	2	SS5_PROX	SS5_PROX:INTRON	AGO1	ENSG00000092847.13	ENST00000373206.5	protein_coding	protein_coding	protein_coding	protein_coding	4	44	2	1.99341	2.051075	2.10874	0.037389	0.0285608	0.155878	0.12666
chr16	1358704	1358800	6274232	0	+	0.489583	(0.476,0.515]	chr16	599252	4	INTRON	INTRON	GNPTG	ENSG00000090581.11	ENST00000204679.9:ENST00000526820.5:ENST00000683366.1:ENST00000527168.6:ENST00000683887.1:ENST00000529110.2:ENST00000684126.1:ENST00000529957.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	44	2	1.99341	2.051075	2.10874	0.037389	0.0285608	0.155878	0.12666
chr19	973257	973356	6992973	0	+	0.494949	(0.476,0.515]	chr19	692440	13	UTR3	UTR3:EXON_MRNA	ARID3A	ENSG00000116017.11	ENST00000263620.8	protein_coding	protein_coding	protein_coding	protein_coding	15	155	2	1.95989	2.05104	2.14219	0.00342631	0.00134842	0.0539802	0.0336321
chr6	36596360	36596460	2854432	0	+	0.36	(0.35,0.378]	chr6	269771	2	SS3_PROX	SS3_PROX:INTRON	SRSF3	ENSG00000112081.17	ENST00000613941.4:ENST00000373715.11:ENST00000620242.1:ENST00000339436.11:ENST00000477442.6:ENST00000620941.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	81	2	1.77736	2.05104	2.32472	0.0225073	0.0066582	0.124921	0.0703994
chr11	93802962	93803060	4848944	0	+	0.357143	(0.35,0.378]	chr11	452330	6	INTRON	INTRON	MED17	ENSG00000042429.12	ENST00000640583.1:ENST00000640804.1:ENST00000638487.1:ENST00000639596.1:ENST00000251871.9:ENST00000640027.1:ENST00000639189.1:ENST00000525026.6:ENST00000533133.6:ENST00000639724.1:ENST00000639457.1:ENST00000640451.1:ENST00000507258.4:ENST00000640521.1:ENST00000638518.1:ENST00000638790.1:ENST00000639523.1:ENST00000640077.1:ENST00000529626.2:ENST00000525613.2:ENST00000640411.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	66	2	1.77736	2.051	2.32464	0.0225073	0.0159285	0.124921	0.101453
chr9	135940913	135941006	4372354	0	-	0.677419	(0.57,1]	chr9	402514	8	INTRON	INTRON	UBAC1	ENSG00000130560.9	ENST00000371756.4:ENST00000489050.5:ENST00000465873.5:ENST00000471163.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	64	2	1.54289	2.050965	2.55904	0.0196542	2.5313e-4	0.120063	0.0147438
chr2	144472795	144472895	1241330	0	-	0.37	(0.35,0.378]	chr2	131722	19	INTRON	INTRON	ZEB2	ENSG00000169554.23	ENST00000636471.1:ENST00000627532.3:ENST00000638128.1:ENST00000637304.1:ENST00000636179.1:ENST00000636820.1:ENST00000419938.5:ENST00000409487.7:ENST00000636732.2:ENST00000636026.2:ENST00000675069.1:ENST00000689298.1:ENST00000539609.7:ENST00000558170.6:ENST00000303660.8:ENST00000427902.5:ENST00000637267.2:ENST00000392861.6:ENST00000431672.4:ENST00000409211.5:ENST00000465308.5:ENST00000434448.5:ENST00000472146.5:ENST00000461784.3:ENST00000476394.5:ENST00000637591.2:ENST00000479735.1:ENST00000453352.5:ENST00000435831.5:ENST00000444559.5:ENST00000630572.2:ENST00000484313.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	58	2	1.70607	2.0509500000000003	2.39583	0.0482819	0.0107976	0.153283	0.0920575
chr17	35664194	35664293	6600325	0	+	0.383838	(0.378,0.408]	chr17	642324	42	INTRON	INTRON	AP2B1	ENSG00000006125.18	ENST00000621914.4:ENST00000620039.4:ENST00000616681.4:ENST00000621668.4:ENST00000610402.5:ENST00000612035.4:ENST00000614600.4:ENST00000612116.5:ENST00000618940.4:ENST00000619183.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	46	2	2.04292	2.050945	2.05897	0.0339294	0.0326035	0.145164	0.134508
chr5	72123242	72123342	2385740	0	+	0.32	(0.28,0.32]	chr5	230228	64	INTRON	INTRON	MAP1B	ENSG00000131711.15	ENST00000512974.5:ENST00000296755.12:ENST00000513526.6:ENST00000511641.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	65	2	1.52982	2.050885	2.57195	0.0379288	0.0331711	0.157212	0.133994
chr10	73777847	73777943	4454108	0	+	0.520833	(0.515,0.57]	chr10	411177	18	INTRON	INTRON	FUT11	ENSG00000196968.11	ENST00000489264.2	protein_coding	processed_transcript	protein_coding	processed_transcript	17	145	2	1.74689	2.0508800000000003	2.35487	0.00414607	4.60561e-4	0.0589317	0.0198034
chr1	39568514	39568610	427705	0	-	0.385417	(0.378,0.408]	chr1	51919	8	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	PABPC4	ENSG00000090621.15	ENST00000677006.1:ENST00000527718.2:ENST00000372858.8:ENST00000372856.7:ENST00000372857.7:ENST00000372862.7:ENST00000676523.1:ENST00000677548.1:ENST00000678980.1:ENST00000677244.1:ENST00000677609.1:ENST00000679246.1:ENST00000678287.1:ENST00000678625.1:ENST00000470443.6:ENST00000678894.1:ENST00000421687.6:ENST00000525669.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	15	161	2	2.02952	2.05085	2.07218	0.00263569	0.00201197	0.0458351	0.0414778
chr9	131131905	131132000	4215685	0	+	0.547368	(0.515,0.57]	chr9	386526	7	INTRON	INTRON	NUP214	ENSG00000126883.19	ENST00000695497.1:ENST00000695498.1:ENST00000695496.1:ENST00000695495.1:ENST00000695494.1:ENST00000695493.1:ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000525561.2:ENST00000651022.1:ENST00000651639.1:ENST00000695499.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	41	2	1.53845	2.050755	2.56306	0.0475376	0.0247751	0.153019	0.131869
chr16	22517884	22517978	6322793	0	+	0.457447	(0.44,0.476]	chr16	605469	4	INTRON	INTRON	NPIPB5	ENSG00000243716.11	ENST00000415654.5:ENST00000415833.6:ENST00000543407.5:ENST00000541154.5:ENST00000545375.5:ENST00000544308.5:ENST00000424340.6:ENST00000521555.6:ENST00000542518.5:ENST00000540704.1:ENST00000517539.5:ENST00000541664.5:ENST00000528249.5:ENST00000517347.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	81	2	1.60033	2.0506900000000003	2.50105	0.030306	0.00240161	0.130104	0.0452061
chr2	20347810	20347910	1076757	0	-	0.46	(0.44,0.476]	chr2	115047	144	INTRON	INTRON	PUM2	ENSG00000055917.16	ENST00000361078.7:ENST00000442400.5:ENST00000420234.5:ENST00000429419.6:ENST00000432105.5:ENST00000446940.5:ENST00000424110.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	61	2	1.36075	2.05069	2.74063	0.0389168	0.0176095	0.160783	0.105143
chr15	84540088	84540188	6251063	0	-	0.46	(0.44,0.476]	chr15	596569	3	SS3_PROX	SS3_PROX:INTRON	UBE2Q2P1	ENSG00000189136.9	ENST00000354771.8:ENST00000339094.5:ENST00000561403.6:ENST00000559958.1:ENST00000559010.1	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript:transcribed_unprocessed_pseudogene	5	45	2	1.49356	2.05065	2.60774	0.0537505	0.0255874	0.180803	0.120269
chr2	85629040	85629139	822146	0	+	0.464646	(0.44,0.476]	chr2	91667	30	INTRON	INTRON	USP39	ENSG00000168883.20	ENST00000459775.5:ENST00000450066.6:ENST00000613444.4:ENST00000409025.5:ENST00000409470.5:ENST00000323701.11:ENST00000409766.7:ENST00000493829.5:ENST00000467885.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	45	2	1.49356	2.05065	2.60774	0.0537505	0.0255874	0.180803	0.120269
chr8	123375764	123375863	4042433	0	-	0.454545	(0.44,0.476]	chr8	368782	27	INTRON	INTRON	ATAD2	ENSG00000156802.13	ENST00000287394.10:ENST00000517666.5:ENST00000521903.5:ENST00000519124.5:ENST00000521496.5:ENST00000530065.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	45	2	1.49356	2.05065	2.60774	0.0537505	0.0255874	0.180803	0.120269
chr13	19766773	19766872	5552783	0	-	0.525253	(0.515,0.57]	chr13	530722	70	INTRON	INTRON	PSPC1	ENSG00000121390.19	ENST00000471658.5:ENST00000492741.5:ENST00000338910.9:ENST00000619300.4:ENST00000427943.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	63	2	1.48539	2.0506	2.61581	0.0553982	0.00127505	0.165463	0.0331722
chr2	111493265	111493364	1211794	0	-	0.535354	(0.515,0.57]	chr2	128943	3	INTRON	INTRON	MIR4435-2HG	ENSG00000172965.17	ENST00000645030.2:ENST00000642191.1:ENST00000673798.1:ENST00000645051.2:ENST00000673649.1:ENST00000669658.1:ENST00000669917.1:ENST00000661559.1:ENST00000653687.1:ENST00000667670.1:ENST00000609220.2:ENST00000656760.1:ENST00000609902.6:ENST00000666683.1:ENST00000674070.1:ENST00000662335.1:ENST00000664422.1:ENST00000673775.1:ENST00000674092.1:ENST00000673958.1:ENST00000658936.1:ENST00000662635.1:ENST00000666204.1:ENST00000659458.1:ENST00000664443.1:ENST00000670295.1:ENST00000661655.1:ENST00000666390.1:ENST00000659079.1:ENST00000660442.1:ENST00000664009.1:ENST00000439362.6:ENST00000654473.1:ENST00000664999.1:ENST00000673728.1:ENST00000659791.1:ENST00000666144.1:ENST00000659933.1:ENST00000670715.1:ENST00000653568.1:ENST00000643013.1:ENST00000673866.1:ENST00000443467.6:ENST00000669875.1:ENST00000673653.1:ENST00000673988.1:ENST00000661945.1:ENST00000669515.1:ENST00000431385.6:ENST00000656416.1:ENST00000674037.1:ENST00000432818.5:ENST00000674013.1:ENST00000444301.5:ENST00000673964.1:ENST00000673845.1:ENST00000673756.1:ENST00000673960.1:ENST00000673804.1:ENST00000673632.1:ENST00000453478.2:ENST00000673937.1:ENST00000673654.1:ENST00000409569.2:ENST00000674087.1:ENST00000419736.5:ENST00000673840.1:ENST00000674045.1:ENST00000643766.1:ENST00000308604.5:ENST00000604981.5:ENST00000673894.1:ENST00000441075.1:ENST00000673878.1:ENST00000673668.1:ENST00000432268.1	lncRNA	lncRNA	lncRNA	lncRNA	5	47	2	2.03361	2.050595	2.06758	0.0325854	0.0140038	0.145164	0.0959618
chr12	54294445	54294539	5330927	0	-	0.585106	(0.57,1]	chr12	508648	7	INTRON	INTRON	NFE2	ENSG00000123405.14	ENST00000435572.7:ENST00000312156.8:ENST00000540264.2:ENST00000553070.5:ENST00000553198.1	protein_coding	protein_coding	protein_coding	protein_coding	11	56	2	1.65102	2.0505899999999997	2.45016	0.0121756	0.00107789	0.0910127	0.0300133
chr8	23568475	23568573	3715498	0	+	0.418367	(0.408,0.44]	chr8	345237	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	SLC25A37	ENSG00000147454.14	ENST00000519973.6:ENST00000290075.10:ENST00000417331.6:ENST00000518881.5:ENST00000520654.1:ENST00000523930.1:ENST00000523883.5:ENST00000522164.5:ENST00000521637.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	66	608	2	1.53888	2.050575	2.56227	0.00190263	1.91327e-5	0.0403328	0.00354813
chr16	21863084	21863183	6461872	0	-	0.30303	(0.28,0.32]	chr16	623459	50	INTRON	INTRON	NPIPB4	ENSG00000185864.18	ENST00000539318.5:ENST00000536041.5:ENST00000543449.1:ENST00000541674.5:ENST00000544693.5:ENST00000538859.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	109	2	1.96841	2.0504949999999997	2.13258	0.0124199	0.00884547	0.0973643	0.0794248
chr22	21781667	21781766	7560520	0	-	0.494949	(0.476,0.515]	chr22	773360	83	INTRON	INTRON	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	14	136	2	1.85172	2.05046	2.2492	0.00342514	0.00238578	0.0539802	0.0439909
chr21	31661934	31662034	7395724	0	+	0.36	(0.35,0.378]	chr21	753288	2	SS5_PROX	SS5_PROX:INTRON	SOD1	ENSG00000142168.15	ENST00000389995.4:ENST00000270142.11:ENST00000476106.5:ENST00000470944.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	98	2	1.60061	2.0504550000000004	2.5003	0.0249092	0.00256148	0.12011	0.0466761
chr21	39274972	39275072	7465147	0	-	0.48	(0.476,0.515]	chr21	760524	1	INTRON	INTRON	BRWD1	ENSG00000185658.14	ENST00000333229.6:ENST00000342449.8:ENST00000380800.7:ENST00000430093.5:ENST00000445245.5:ENST00000445668.5:ENST00000412604.1:ENST00000455867.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	20	197	2	1.51179	2.050455	2.58912	0.0123651	7.06301e-5	0.0915816	0.00695342
chr10	35358073	35358173	4424718	0	+	0.38	(0.378,0.408]	chr10	407899	205	INTRON	INTRON	CCNY	ENSG00000108100.18	ENST00000374706.5:ENST00000490012.6:ENST00000493157.6:ENST00000374704.8:ENST00000265375.13:ENST00000339497.7:ENST00000492478.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	121	2	1.82093	2.05044	2.27995	0.00507045	0.00388691	0.0646039	0.0544347
chr9	78023615	78023715	4271866	0	-	0.21	[0,0.28]	chr9	392880	1009	INTRON	INTRON	GNAQ	ENSG00000156052.11	ENST00000286548.9:ENST00000411677.1	protein_coding	protein_coding	protein_coding	protein_coding	4	64	2	1.812	2.050425	2.28885	0.0729149	0.0181093	0.189235	0.114853
chr12	112360981	112361081	5417540	0	-	0.24	[0,0.28]	chr12	517670	409	INTRON	INTRON	HECTD4	ENSG00000173064.14	ENST00000550722.5:ENST00000377560.9:ENST00000682272.1:ENST00000550724.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	64	2	1.89998	2.050355	2.20073	0.0599553	0.0235708	0.169548	0.128907
chr10	87321043	87321143	4661174	0	-	0.31	(0.28,0.32]	chr10	429467	3	SS3_PROX	SS3_PROX:INTRON	NUTM2A-AS1	ENSG00000223482.9	ENST00000692417.1:ENST00000688214.1:ENST00000659257.1:ENST00000671543.1:ENST00000451940.6:ENST00000687947.1:ENST00000663644.1:ENST00000684884.1:ENST00000664664.1:ENST00000446751.6:ENST00000456104.5:ENST00000433530.7:ENST00000688257.1:ENST00000433920.5:ENST00000687925.1:ENST00000666515.2:ENST00000688926.1:ENST00000447424.6:ENST00000690598.1:ENST00000663113.1:ENST00000667520.2:ENST00000693252.1:ENST00000687827.1:ENST00000687141.1:ENST00000654503.2:ENST00000655272.2:ENST00000668676.1:ENST00000653080.1:ENST00000690287.1:ENST00000413722.6:ENST00000653238.1:ENST00000660454.1:ENST00000688790.1:ENST00000660726.2:ENST00000417860.7:ENST00000663683.1:ENST00000686862.1:ENST00000413961.5	lncRNA	lncRNA	lncRNA	lncRNA	4	56	2	1.76293	2.05032	2.33771	0.0766478	0.0142701	0.196164	0.103838
chr6	7191220	7191320	2799204	0	+	0.29	(0.28,0.32]	chr6	263761	15	INTRON	INTRON	RREB1	ENSG00000124782.21	ENST00000379933.7:ENST00000471433.5:ENST00000379938.7:ENST00000349384.10:ENST00000334984.10:ENST00000475946.5:ENST00000483150.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	56	2	1.76293	2.05032	2.33771	0.0766478	0.0142701	0.196164	0.103838
chr9	37236207	37236307	4118819	0	+	0.31	(0.28,0.32]	chr9	375389	493	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000461038.5:ENST00000488607.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	56	2	1.76293	2.05032	2.33771	0.0766478	0.0142701	0.196164	0.103838
chr17	46116470	46116570	6784099	0	-	0.45	(0.44,0.476]	chr17	669208	214	INTRON	INTRON	KANSL1	ENSG00000120071.15	ENST00000574590.6:ENST00000572904.6:ENST00000432791.7:ENST00000575318.6:ENST00000638275.1:ENST00000262419.10:ENST00000648792.1:ENST00000639531.1:ENST00000639150.1:ENST00000639853.1:ENST00000571698.2:ENST00000639375.1:ENST00000577114.2:ENST00000638269.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	11	106	2	1.63619	2.050205	2.46422	0.0132839	0.00282908	0.0944742	0.0491595
chr6	13621689	13621785	3058308	0	-	0.34375	(0.32,0.35]	chr6	284471	3	UTR3	UTR3:EXON_MRNA	RANBP9	ENSG00000010017.13	ENST00000011619.6	protein_coding	protein_coding	protein_coding	protein_coding	8	71	2	1.35626	2.050205	2.74415	0.0414162	0.0198267	0.161578	0.109608
chr6	170629738	170629837	3037749	0	+	0.353535	(0.35,0.378]	chr6	283177	20	INTRON	INTRON	ENSG00000287411:ENSG00000230423	ENSG00000287411.1:ENSG00000230423.3	ENST00000667394.1:ENST00000656791.1:ENST00000426839.2	lncRNA	lncRNA	lncRNA	lncRNA	7	74	2	1.33846	2.0501899999999997	2.76192	0.0687435	0.00265021	0.184298	0.0474328
chr12	45955021	45955118	5315260	0	-	0.237113	[0,0.28]	chr12	505614	4	UTR3	UTR3:EXON_MRNA:INTRON	SCAF11	ENSG00000139218.18	ENST00000369367.8:ENST00000547018.5:ENST00000266589.10:ENST00000395454.6	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay	6	94	2	2.00184	2.050125	2.09841	0.0255167	0.0151026	0.120269	0.108435
chr8	129505453	129505553	4060336	0	-	0.32	(0.28,0.32]	chr8	369642	103	INTRON	INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1:ENST00000676273.1:ENST00000667643.1:ENST00000668791.1:ENST00000663716.1:ENST00000663572.1:ENST00000676148.1:ENST00000667962.1:ENST00000674877.1:ENST00000675316.1:ENST00000674656.1:ENST00000446592.7:ENST00000667341.1:ENST00000675186.1:ENST00000652971.1:ENST00000661447.1:ENST00000674863.1:ENST00000675498.1:ENST00000675527.1:ENST00000676108.1:ENST00000657647.1:ENST00000675589.1:ENST00000675913.1:ENST00000675109.1:ENST00000671632.1:ENST00000671311.1:ENST00000676099.1:ENST00000660652.1:ENST00000675522.1:ENST00000675183.1:ENST00000658861.1:ENST00000663991.1:ENST00000675044.1:ENST00000675435.1:ENST00000674639.1:ENST00000676069.1:ENST00000675532.1:ENST00000674762.1:ENST00000523151.6:ENST00000675948.1:ENST00000665364.1:ENST00000657251.1:ENST00000675166.1:ENST00000674883.1:ENST00000675867.1:ENST00000674580.1:ENST00000675393.1:ENST00000520048.1:ENST00000674906.1:ENST00000676030.1:ENST00000670588.1:ENST00000675072.1:ENST00000664936.1:ENST00000652914.1:ENST00000657069.1	lncRNA	lncRNA	lncRNA	lncRNA	10	137	2	1.87474	2.050095	2.22545	0.0115687	0.00404105	0.0962115	0.0555558
chr1	225779309	225779409	327257	0	+	0.51	(0.476,0.515]	chr1	37651	9	INTRON	INTRON	SRP9	ENSG00000143742.14	ENST00000626563.2:ENST00000619790.4:ENST00000304786.12:ENST00000650651.1:ENST00000366839.8:ENST00000651465.1:ENST00000651761.1:ENST00000651653.1:ENST00000366838.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	88	2	1.85394	2.05003	2.24612	0.00799949	0.00763096	0.0777238	0.0766625
chr16	23889870	23889969	6324299	0	+	0.333333	(0.32,0.35]	chr16	605697	207	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000645517.1:ENST00000498739.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	62	2	1.99307	2.05001	2.10695	0.04271	0.0127483	0.148082	0.0987441
chr19	51887687	51887783	7204409	0	-	0.5625	(0.515,0.57]	chr19	731071	10	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	ZNF577	ENSG00000161551.15	ENST00000638827.1:ENST00000639703.1:ENST00000640955.1:ENST00000301399.12:ENST00000638348.2:ENST00000451628.9:ENST00000639636.2:ENST00000638325.1:ENST00000638814.1:ENST00000638538.1:ENST00000638423.1:ENST00000640429.1:ENST00000638684.1:ENST00000638721.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	38	2	1.94945	2.04998	2.15051	0.0414068	0.0238113	0.161557	0.118889
chr17	30750621	30750720	6589994	0	+	0.383838	(0.378,0.408]	chr17	640860	69	INTRON	INTRON	SUZ12P1	ENSG00000264538.7	ENST00000578070.5:ENST00000579526.5:ENST00000690405.1:ENST00000497969.6:ENST00000578195.6:ENST00000582557.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	9	92	2	1.674	2.04997	2.42594	0.0159536	0.00428028	0.109464	0.0574861
chr10	59884553	59884653	4623660	0	-	0.42	(0.408,0.44]	chr10	425682	315	INTRON	INTRON	CCDC6	ENSG00000108091.11	ENST00000263102.7	protein_coding	protein_coding	protein_coding	protein_coding	4	45	2	1.93243	2.049945	2.16746	0.0441194	0.024436	0.162255	0.12011
chr7	107143036	107143135	3378155	0	+	0.424242	(0.408,0.44]	chr7	316270	17	INTRON	INTRON	PRKAR2B	ENSG00000005249.13	ENST00000265717.5:ENST00000488792.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	45	2	1.93243	2.049945	2.16746	0.0441194	0.024436	0.162255	0.12011
chr7	127813365	127813465	3404024	0	+	0.42	(0.408,0.44]	chr7	318140	54	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000468166.5:ENST00000465900.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	45	2	1.93243	2.049945	2.16746	0.0441194	0.024436	0.162255	0.12011
chr12	123156706	123156806	5443269	0	-	0.29	(0.28,0.32]	chr12	520744	26	UTR3	UTR3:EXON_MRNA:INTRON	MPHOSPH9	ENSG00000051825.15	ENST00000541603.6:ENST00000606320.6:ENST00000541076.6:ENST00000545974.5:ENST00000545556.6:ENST00000302373.8:ENST00000606704.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	57	2	1.47299	2.049925	2.62686	0.0597769	0.0289217	0.189982	0.1274
chr18	12964335	12964435	6876323	0	+	0.25	[0,0.28]	chr18	681291	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	SEH1L	ENSG00000085415.16	ENST00000262124.15:ENST00000399892.7:ENST00000585730.5:ENST00000589446.5:ENST00000587761.1:ENST00000588251.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	123	2	1.81251	2.049925	2.28734	0.0287393	0.00414216	0.127066	0.0589205
chr4	78810566	78810666	1981727	0	+	0.47	(0.44,0.476]	chr4	198463	335	INTRON	INTRON	BMP2K	ENSG00000138756.19	ENST00000389010.7:ENST00000502613.3:ENST00000502871.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	103	2	1.98356	2.04977	2.11598	0.00757232	0.0035604	0.0749063	0.0548355
chr2	87657921	87658020	827966	0	+	0.464646	(0.44,0.476]	chr2	92501	213	INTRON	INTRON	ENSG00000284879	ENSG00000284879.1	ENST00000643276.1:ENST00000646855.1	lncRNA	lncRNA	lncRNA	lncRNA	5	48	2	1.5191	2.049715	2.58033	0.0526241	0.0247511	0.160983	0.131869
chr11	68464221	68464321	4817367	0	+	0.54	(0.515,0.57]	chr11	448907	30	INTRON	INTRON	PPP6R3	ENSG00000110075.15	ENST00000530427.5:ENST00000528635.5:ENST00000529907.5:ENST00000533127.5:ENST00000534534.5:ENST00000529344.5:ENST00000524845.5:ENST00000393800.7:ENST00000265637.8:ENST00000524904.5:ENST00000393801.7:ENST00000265636.9:ENST00000529710.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	59	2	1.64356	2.049705	2.45585	0.024299	0.00797827	0.12011	0.0798772
chr8	99194854	99194954	3813095	0	+	0.55	(0.515,0.57]	chr8	353170	14	INTRON	INTRON	VPS13B	ENSG00000132549.20	ENST00000496144.5:ENST00000683334.1:ENST00000357162.7:ENST00000358544.7:ENST00000683619.1:ENST00000683869.1:ENST00000682153.1:ENST00000682358.1:ENST00000682145.1:ENST00000355155.6:ENST00000682234.1:ENST00000683486.1:ENST00000684308.1:ENST00000521932.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	81	2	1.43219	2.0497	2.66721	0.0483322	3.70168e-4	0.153415	0.0173218
chr1	171497498	171497597	253334	0	+	0.525253	(0.515,0.57]	chr1	30096	114	INTRON	INTRON	PRRC2C	ENSG00000117523.18	ENST00000647382.2:ENST00000367742.7:ENST00000476522.5:ENST00000338920.8:ENST00000467601.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	28	2	1.86007	2.04961	2.23915	0.0596178	0.0526611	0.178401	0.16883600000000001
chr2	8901338	8901438	1062539	0	-	0.53	(0.515,0.57]	chr2	113359	129	INTRON	INTRON	MBOAT2	ENSG00000143797.12	ENST00000305997.8:ENST00000486484.5:ENST00000477073.5:ENST00000474341.5:ENST00000462696.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	28	2	1.86007	2.04961	2.23915	0.0596178	0.0526611	0.178401	0.16883600000000001
chr9	129499745	129499843	4209917	0	+	0.530612	(0.515,0.57]	chr9	385771	9	INTRON	INTRON	LINC00963	ENSG00000204054.14	ENST00000653047.1:ENST00000454968.5:ENST00000652803.1:ENST00000444184.6:ENST00000658785.1:ENST00000656664.1:ENST00000666282.1:ENST00000663727.1:ENST00000663000.1:ENST00000666041.1:ENST00000657306.1:ENST00000668074.1:ENST00000656234.1:ENST00000662331.1:ENST00000654822.1:ENST00000659188.1:ENST00000658175.1:ENST00000654204.1:ENST00000659535.1:ENST00000653700.1:ENST00000667047.1:ENST00000665998.1:ENST00000664811.1:ENST00000665880.1:ENST00000662047.1:ENST00000671609.1:ENST00000671555.1:ENST00000655787.1:ENST00000419300.3:ENST00000423918.5:ENST00000661101.1:ENST00000666559.1:ENST00000668919.1:ENST00000654131.1:ENST00000653386.1:ENST00000655962.1:ENST00000659690.1:ENST00000657389.1:ENST00000668206.1:ENST00000669088.1:ENST00000654286.1:ENST00000658999.1:ENST00000624138.4:ENST00000454635.6:ENST00000625171.4:ENST00000624390.1:ENST00000622972.3:ENST00000624009.3:ENST00000669210.1:ENST00000412141.2:ENST00000622680.2:ENST00000622120.2:ENST00000607931.1:ENST00000453213.2:ENST00000608272.2:ENST00000623185.4:ENST00000669939.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	3	28	2	1.86007	2.04961	2.23915	0.0596178	0.0526611	0.178401	0.16883600000000001
chr12	98521104	98521204	5198674	0	+	0.49	(0.476,0.515]	chr12	491795	42	INTRON	INTRON	TMPO	ENSG00000120802.14	ENST00000548911.1:ENST00000556029.6:ENST00000343315.9:ENST00000266732.8:ENST00000393053.6:ENST00000546828.6:ENST00000261210.9:ENST00000549938.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	92	2	1.78749	2.04931	2.31113	0.0157618	0.00258657	0.101453	0.0469354
chr1	52393042	52393142	456953	0	-	0.3	(0.28,0.32]	chr1	54888	2	SS5_PROX	SS5_PROX:INTRON	ORC1	ENSG00000085840.13	ENST00000371568.8:ENST00000371566.1	protein_coding	protein_coding	protein_coding	protein_coding	3	41	2	1.83771	2.049305	2.2609	0.0671429	0.0591725	0.189982	0.183051
chr10	50340881	50340964	4617849	0	-	0.313253	(0.28,0.32]	chr10	425406	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SGMS1	ENSG00000198964.14	ENST00000429490.5:ENST00000361781.7:ENST00000361543.3:ENST00000626236.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	41	2	1.83771	2.049305	2.2609	0.0671429	0.0591725	0.189982	0.183051
chr2	181917104	181917204	937214	0	+	0.3	(0.28,0.32]	chr2	102725	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	ITPRID2	ENSG00000138434.17	ENST00000431877.7:ENST00000320370.11:ENST00000409001.5:ENST00000440623.5:ENST00000454579.5:ENST00000416081.5:ENST00000491720.5:ENST00000409136.5:ENST00000491866.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	41	2	1.83771	2.049305	2.2609	0.0671429	0.0591725	0.189982	0.183051
chr7	107432328	107432428	3611708	0	-	0.3	(0.28,0.32]	chr7	336694	193	INTRON	INTRON	COG5	ENSG00000164597.15	ENST00000297135.9:ENST00000347053.8:ENST00000393603.7:ENST00000484237.5:ENST00000475638.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	41	2	1.83771	2.049305	2.2609	0.0671429	0.0591725	0.189982	0.183051
chr9	37186805	37186888	4118324	0	+	0.313253	(0.28,0.32]	chr9	375388	2	UTR3	UTR3:EXON_MRNA:INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000322831.6:ENST00000461038.5:ENST00000488607.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	41	2	1.83771	2.049305	2.2609	0.0671429	0.0591725	0.189982	0.183051
chr11	66645626	66645726	4811102	0	+	0.35	(0.32,0.35]	chr11	447904	2	SS3_PROX	SS3_PROX:INTRON	RBM14-RBM4:RBM4	ENSG00000248643.5:ENSG00000173933.21	ENST00000412278.2:ENST00000500635.2:ENST00000396053.9:ENST00000408993.6:ENST00000578778.5:ENST00000398692.8:ENST00000310092.12:ENST00000528039.5:ENST00000506523.6:ENST00000530235.1:ENST00000409406.1:ENST00000515838.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	133	2	1.82067	2.04929	2.27791	0.0163349	0.00121437	0.101571	0.032255
chr21	29334061	29334160	7392707	0	+	0.343434	(0.32,0.35]	chr21	753205	40	INTRON	INTRON	BACH1	ENSG00000156273.16	ENST00000286800.8:ENST00000399921.5:ENST00000422809.5:ENST00000468059.1	protein_coding	protein_coding	protein_coding	protein_coding	8	95	2	1.96868	2.04924	2.1298	0.0141189	0.00749728	0.0959618	0.0773151
chr3	33801731	33801830	1394410	0	+	0.313131	(0.28,0.32]	chr3	146021	18	INTRON	INTRON	PDCD6IP	ENSG00000170248.15	ENST00000457054.6:ENST00000648706.1:ENST00000435909.5:ENST00000430877.5:ENST00000413073.1:ENST00000307296.8:ENST00000477798.5:ENST00000498147.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	102	2	1.59385	2.049235	2.50462	0.0190086	0.0102735	0.118802	0.0850389
chr1	12302827	12302925	28979	0	+	0.27551	[0,0.28]	chr1	3512	31	INTRON	INTRON	VPS13D	ENSG00000048707.15	ENST00000620676.6:ENST00000613099.4:ENST00000011700.10:ENST00000646917.1:ENST00000460333.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	67	2	1.71089	2.04923	2.38757	0.0552962	0.0318277	0.165463	0.14477
chr17	31183281	31183376	6592027	0	+	0.347368	(0.32,0.35]	chr17	641100	5	UTR3	UTR3:EXON_MRNA:INTRON	NF1	ENSG00000196712.20	ENST00000696138.1:ENST00000356175.7:ENST00000487476.5:ENST00000691014.1:ENST00000358273.9:ENST00000431387.8:ENST00000579081.5:ENST00000495910.6:ENST00000490416.2:ENST00000686189.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	63	2	1.83416	2.04923	2.2643	0.0631198	0.00712852	0.176946	0.0756118
chr15	41353071	41353170	6004980	0	+	0.30303	(0.28,0.32]	chr15	571319	12	INTRON	INTRON	NUSAP1	ENSG00000137804.14	ENST00000668273.1:ENST00000260359.10:ENST00000558123.5:ENST00000414849.6:ENST00000450592.6:ENST00000559596.6:ENST00000560747.5:ENST00000560177.5:ENST00000557840.5:ENST00000560898.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	119	2	1.9455	2.0492049999999997	2.15291	0.016777	0.00374651	0.103294	0.0562379
chr6	27851908	27852008	2839156	0	+	0.24	[0,0.28]	chr6	266458	4	SS3_PROX	SS3_PROX:INTRON	H2BC15	ENSG00000233822.6	ENST00000449538.3:ENST00000606613.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	123	2	1.78859	2.04919	2.30979	0.0307903	0.00378148	0.13151	0.0562562
chr16	87751435	87751534	6538530	0	-	0.353535	(0.35,0.378]	chr16	633553	6	INTRON	INTRON	KLHDC4	ENSG00000104731.14	ENST00000567298.5:ENST00000270583.10:ENST00000347925.9:ENST00000353170.9:ENST00000562155.5:ENST00000622456.4:ENST00000562261.1:ENST00000566661.5:ENST00000564484.5:ENST00000565328.5:ENST00000569747.5:ENST00000564396.5:ENST00000568502.1:ENST00000561825.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	59	2	1.65083	2.049165	2.4475	0.0521072	0.0106974	0.177022	0.0862205
chr16	18846507	18846596	6457252	0	-	0.303371	(0.28,0.32]	chr16	622695	5	INTRON	INTRON	SMG1	ENSG00000157106.18	ENST00000446231.7:ENST00000565324.5:ENST00000563448.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	68	2	1.91611	2.049115	2.18212	0.0539102	0.010265700000000001	0.164153	0.089002
chr19	47132197	47132295	7083881	0	+	0.5	(0.476,0.515]	chr19	708735	7	INTRON	INTRON	SAE1	ENSG00000142230.13	ENST00000594144.5:ENST00000594526.5:ENST00000597808.5:ENST00000413379.7:ENST00000600706.5:ENST00000270225.12:ENST00000598840.5:ENST00000414294.6:ENST00000600753.1:ENST00000660039.1:ENST00000664120.1:ENST00000596995.1:ENST00000392776.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	15	152	2	1.5874	2.049105	2.51081	0.0114948	4.08403e-4	0.0958	0.0185763
chr9	130759754	130759854	4214322	0	+	0.46	(0.44,0.476]	chr9	386427	449	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000393293.4	protein_coding	protein_coding	protein_coding	protein_coding	24	243	2	1.96304	2.049095	2.13515	0.00120234	5.93361e-4	0.0316272	0.0221865
chr10	73488509	73488609	4650080	0	-	0.38	(0.378,0.408]	chr10	427923	86	INTRON	INTRON	PPP3CB	ENSG00000107758.16	ENST00000360663.10:ENST00000394828.6:ENST00000394829.6:ENST00000342558.3	protein_coding	protein_coding	protein_coding	protein_coding	5	55	2	1.63458	2.049015	2.46345	0.0573057	0.00827342	0.167723	0.0813266
chr5	180793986	180794083	2783143	0	-	0.391753	(0.378,0.408]	chr5	262774	5	INTRON	INTRON	MGAT1	ENSG00000131446.17	ENST00000307826.5:ENST00000333055.8:ENST00000393340.7:ENST00000446023.6:ENST00000427865.2:ENST00000504671.1:ENST00000506889.1:ENST00000514283.1:ENST00000512695.1:ENST00000506269.1:ENST00000514438.1:ENST00000502678.1:ENST00000513431.5:ENST00000507384.1:ENST00000504385.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	55	2	1.63458	2.049015	2.46345	0.0573057	0.00827342	0.167723	0.0813266
chr9	128269744	128269839	4358166	0	-	0.557895	(0.515,0.57]	chr9	400429	4	INTRON	INTRON	GOLGA2	ENSG00000167110.19	ENST00000421699.8:ENST00000611957.5:ENST00000693185.1:ENST00000686291.1:ENST00000687179.1:ENST00000458730.3:ENST00000693047.1:ENST00000686884.1:ENST00000693180.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	81	2	1.52078	2.048955	2.57713	0.0211248	0.00176427	0.122921	0.0376652
chr1	508487	508586	355647	0	-	0.353535	(0.35,0.378]	chr1	41008	30	INTRON	INTRON	ENSG00000237094	ENSG00000237094.12	ENST00000641303.1:ENST00000641063.1:ENST00000641049.1:ENST00000642124.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	4	48	2	1.98929	2.04894	2.10859	0.0417909	0.0272722	0.147075	0.136494
chr7	75351335	75351435	3558130	0	-	0.36	(0.35,0.378]	chr7	331450	1	SS5_PROX	SS5_PROX:INTRON	PMS2P2	ENSG00000278416.1	ENST00000425039.3	translated_unprocessed_pseudogene	translated_unprocessed_pseudogene	translated_unprocessed_pseudogene	translated_unprocessed_pseudogene	4	48	2	1.98929	2.04894	2.10859	0.0417909	0.0272722	0.147075	0.136494
chr4	17955970	17956069	2117633	0	-	0.363636	(0.35,0.378]	chr4	209129	463	INTRON	INTRON	LCORL	ENSG00000178177.17	ENST00000635767.2:ENST00000326877.8:ENST00000675131.1:ENST00000675143.1:ENST00000637787.1:ENST00000675605.1:ENST00000510451.5:ENST00000510121.5:ENST00000675927.1:ENST00000382224.5:ENST00000382226.5:ENST00000676061.1:ENST00000674942.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	49	2	1.49446	2.0489349999999997	2.60341	0.054297	0.0275785	0.182243	0.123904
chr17	45065883	45065982	6617399	0	+	0.464646	(0.44,0.476]	chr17	645300	36	INTRON	INTRON	NMT1	ENSG00000136448.13	ENST00000678938.1:ENST00000592782.5:ENST00000676828.1:ENST00000590310.2:ENST00000587014.2:ENST00000591931.2:ENST00000678606.1:ENST00000677949.1:ENST00000587670.2:ENST00000258960.7:ENST00000678576.1:ENST00000676753.1:ENST00000678332.1:ENST00000543908.5:ENST00000590114.6:ENST00000585561.5:ENST00000592654.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	53	2	1.7651	2.0489100000000002	2.33272	0.039388	0.0129984	0.143072	0.0991656
chr6	154751309	154751409	3001996	0	+	0.5	(0.476,0.515]	chr6	280737	89	INTRON	INTRON	SCAF8	ENSG00000213079.10	ENST00000367186.7:ENST00000417268.3:ENST00000461219.5:ENST00000367178.8:ENST00000464628.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	101	2	1.47534	2.04887	2.6224	0.0350582	5.5634e-4	0.137535	0.0214853
chr5	126912035	126912134	2713369	0	-	0.414141	(0.408,0.44]	chr5	255257	124	INTRON	INTRON	MARCHF3	ENSG00000173926.6	ENST00000308660.6:ENST00000504239.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	53	2	1.9831	2.048785	2.11447	0.0285207	0.018491	0.12666	0.116694
chr6	116277527	116277625	3197592	0	-	0.428571	(0.408,0.44]	chr6	297825	28	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	TSPYL1	ENSG00000189241.8	ENST00000652202.1:ENST00000368608.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	53	2	1.9831	2.048785	2.11447	0.0285207	0.018491	0.12666	0.116694
chr22	21585065	21585165	7481878	0	+	0.46	(0.44,0.476]	chr22	763232	163	INTRON	INTRON	UBE2L3	ENSG00000185651.16	ENST00000458578.6:ENST00000545681.2:ENST00000696046.1:ENST00000342192.9:ENST00000496722.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	67	2	1.54104	2.048765	2.55649	0.0339289	0.00670547	0.146815	0.0707084
chr20	50901616	50901716	7355576	0	-	0.38	(0.378,0.408]	chr20	750083	2	SS5_PROX	SS5_PROX:INTRON	ADNP	ENSG00000101126.18	ENST00000371602.9:ENST00000621696.5:ENST00000673732.1:ENST00000396029.8:ENST00000644386.1:ENST00000396032.8:ENST00000349014.8:ENST00000645081.1:ENST00000642364.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	55	2	1.8374	2.048745	2.26009	0.0299228	0.0188651	0.142135	0.108861
chr1	206653260	206653360	301821	0	+	0.44	(0.408,0.44]	chr1	34682	44	UTR3	UTR3:EXON_MRNA:INTRON	DYRK3	ENSG00000143479.18	ENST00000367109.8:ENST00000489878.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	53	2	1.93002	2.04874	2.16746	0.024436	0.022095	0.123903	0.12011
chr9	133273861	133273961	4370018	0	-	0.6	(0.57,1]	chr9	402068	113	INTRON	INTRON	ABO	ENSG00000175164.16	ENST00000679909.1:ENST00000453660.4:ENST00000647353.1:ENST00000611156.4:ENST00000538324.2:ENST00000651471.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	48	2	1.64729	2.048725	2.45016	0.0231375	0.00107789	0.118148	0.0300133
chr11	3396688	3396788	4722998	0	+	0.38	(0.378,0.408]	chr11	436999	2	SS3_PROX	SS3_PROX:INTRON	TSSC2	ENSG00000223756.8	ENST00000685598.1:ENST00000691197.1:ENST00000533775.6:ENST00000690471.1:ENST00000529482.5:ENST00000693396.1:ENST00000685130.1:ENST00000526284.5:ENST00000526488.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	13	138	2	2.00577	2.04859	2.09141	0.00354755	0.00279033	0.0529407	0.0488769
chr7	107545614	107545714	3612843	0	-	0.54	(0.515,0.57]	chr7	336704	179	INTRON	INTRON	COG5	ENSG00000164597.15	ENST00000297135.9:ENST00000347053.8:ENST00000393603.7:ENST00000475638.6:ENST00000605888.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	62	2	1.68687	2.048545	2.41022	0.0300837	0.00332441	0.129186	0.0528673
chr7	151514603	151514702	3674873	0	-	0.363636	(0.35,0.378]	chr7	341207	161	INTRON	INTRON	RHEB	ENSG00000106615.10	ENST00000262187.10:ENST00000472642.5:ENST00000478470.5:ENST00000496004.5:ENST00000470370.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	97	2	1.46754	2.04852	2.6295	0.0383604	0.00142732	0.142063	0.0347139
chr11	3775285	3775381	4894947	0	-	0.53125	(0.515,0.57]	chr11	458908	12	INTRON	INTRON	NUP98	ENSG00000110713.17	ENST00000359171.8:ENST00000324932.12:ENST00000650171.1:ENST00000355260.7:ENST00000397004.8:ENST00000397007.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	62	2	2.01978	2.048495	2.07721	0.0165522	0.0067022	0.102621	0.0738715
chr20	32790504	32790603	7256945	0	+	0.555556	(0.515,0.57]	chr20	737157	11	INTRON	INTRON	DNMT3B	ENSG00000088305.19	ENST00000696232.1:ENST00000328111.6:ENST00000696231.1:ENST00000348286.6:ENST00000353855.6:ENST00000696233.1:ENST00000443239.7:ENST00000696234.1:ENST00000696235.1:ENST00000456297.6:ENST00000696236.1:ENST00000201963.3:ENST00000696238.1:ENST00000696239.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	62	2	2.01978	2.048495	2.07721	0.0165522	0.0067022	0.102621	0.0738715
chr4	82425359	82425459	2177578	0	-	0.31	(0.28,0.32]	chr4	214167	29	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HNRNPDL	ENSG00000152795.18	ENST00000621267.4:ENST00000614627.4:ENST00000295470.10:ENST00000507721.5:ENST00000502762.4:ENST00000349655.8:ENST00000602300.5:ENST00000630114.2:ENST00000630827.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	18	236	2	1.7717	2.0484850000000003	2.32527	0.0106621	3.24201e-4	0.0861859	0.015981
chr18	32119235	32119335	6887538	0	+	0.42	(0.408,0.44]	chr18	682674	50	INTRON	INTRON	RNF138	ENSG00000134758.14	ENST00000261593.8:ENST00000257190.9:ENST00000580499.1	protein_coding	protein_coding	protein_coding	protein_coding	6	64	2	1.96534	2.048455	2.13157	0.0216499	0.0109031	0.11491	0.0923273
chr15	85092873	85092973	6090052	0	+	0.37	(0.35,0.378]	chr15	579554	13	INTRON	INTRON	PDE8A	ENSG00000073417.15	ENST00000310298.8:ENST00000557957.5:ENST00000394553.6:ENST00000339708.9:ENST00000478717.5:ENST00000485596.5:ENST00000559742.5:ENST00000559086.5:ENST00000560789.5:ENST00000557819.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	13	124	2	1.31871	2.0484	2.77809	0.0299989	0.00103021	0.142135	0.029231300000000002
chr12	53474073	53474171	5143123	0	+	0.387755	(0.378,0.408]	chr12	485448	19	INTRON	INTRON	PCBP2	ENSG00000197111.16	ENST00000546463.6:ENST00000437231.5:ENST00000447282.5:ENST00000359282.9:ENST00000549863.5:ENST00000359462.9:ENST00000552296.6:ENST00000552819.5:ENST00000455667.7:ENST00000439930.7:ENST00000548933.5:ENST00000562264.5:ENST00000550585.5:ENST00000553064.6:ENST00000547859.2:ENST00000547048.5:ENST00000550733.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	93	2	1.3277	2.048315	2.76893	0.0321963	0.00316735	0.145026	0.0503085
chr7	23187741	23187836	3289688	0	+	0.452632	(0.44,0.476]	chr7	305552	2	SS3_PROX	SS3_PROX:INTRON	NUP42	ENSG00000136243.18	ENST00000485250.5:ENST00000438012.5:ENST00000410002.7:ENST00000258742.10:ENST00000487595.5:ENST00000413919.1:ENST00000437140.5:ENST00000486136.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	82	2	1.7899	2.048315	2.30673	0.0158205	0.0055175	0.101453	0.0672816
chr22	19092684	19092784	7551717	0	-	0.22	[0,0.28]	chr22	771903	28	INTRON	INTRON	DGCR2	ENSG00000070413.20	ENST00000537045.5:ENST00000545799.5:ENST00000263196.12:ENST00000389262.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	64	2	1.94204	2.048305	2.15457	0.0544139	0.0269306	0.164972	0.135288
chr2	61483023	61483091	1130634	0	-	0.352941	(0.35,0.378]	chr2	121518	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	XPO1	ENSG00000082898.19	ENST00000677110.1:ENST00000678113.1:ENST00000676553.1:ENST00000677556.1:ENST00000677814.1:ENST00000676771.1:ENST00000677803.1:ENST00000677239.1:ENST00000678790.1:ENST00000677928.1:ENST00000678182.1:ENST00000677150.1:ENST00000678172.1:ENST00000678360.1:ENST00000678081.1:ENST00000676889.1:ENST00000676783.1:ENST00000679035.1:ENST00000677422.1:ENST00000677417.1:ENST00000677813.1:ENST00000676999.1:ENST00000676667.1:ENST00000678263.1:ENST00000678877.1:ENST00000677933.1:ENST00000680228.1:ENST00000677289.1:ENST00000677190.1:ENST00000481073.6:ENST00000677476.1:ENST00000469337.2:ENST00000401558.7:ENST00000428210.5:ENST00000677290.1:ENST00000677850.1:ENST00000678640.1:ENST00000676778.1:ENST00000451765.6:ENST00000676789.1:ENST00000678741.1:ENST00000404992.6:ENST00000406957.5:ENST00000677157.1:ENST00000461407.5:ENST00000492182.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	123	2	1.99712	2.04828	2.09944	0.00798081	0.00266508	0.0766064	0.0476626
chr16	10396796	10396896	6286385	0	+	0.35	(0.32,0.35]	chr16	601961	39	INTRON	INTRON	ATF7IP2	ENSG00000166669.14	ENST00000564797.5:ENST00000396559.5:ENST00000396560.6:ENST00000562527.5:ENST00000561932.5:ENST00000543967.5:ENST00000562102.6:ENST00000535850.5:ENST00000569900.5:ENST00000569939.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	62	2	1.69107	2.048185	2.4053	0.0517392	0.0108284	0.159306	0.0920575
chr3	196061414	196061509	1897330	0	-	0.315789	(0.28,0.32]	chr3	189919	8	INTRON	INTRON	TFRC	ENSG00000072274.13	ENST00000420415.5:ENST00000360110.9:ENST00000392396.7:ENST00000475593.5:ENST00000465288.5:ENST00000477148.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	10	135	2	1.56174	2.048185	2.53463	0.039921	6.24568e-4	0.143115	0.0224805
chr3	196058958	196059045	1897303	0	-	0.367816	(0.35,0.378]	chr3	189912	1	SS3_PROX	SS3_PROX:INTRON	TFRC	ENSG00000072274.13	ENST00000420415.5:ENST00000360110.9:ENST00000392396.7:ENST00000475593.5:ENST00000483983.5:ENST00000463356.5:ENST00000465288.5:ENST00000477148.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	16	177	2	1.92522	2.0481	2.17098	0.00256457	0.00194964	0.0466761	0.0400465
chr5	180503584	180503684	2561955	0	+	0.43	(0.408,0.44]	chr5	245082	76	INTRON	INTRON	CNOT6	ENSG00000113300.13	ENST00000261951.9:ENST00000393356.7:ENST00000507016.1:ENST00000618123.4:ENST00000502447.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	61	2	1.92871	2.048085	2.16746	0.024436	0.0127189	0.12011	0.0986242
chr15	94889424	94889524	6105523	0	+	0.36	(0.35,0.378]	chr15	581666	322	INTRON	INTRON	ENSG00000277654	ENSG00000277654.6	ENST00000618611.4:ENST00000648065.1:ENST00000618377.1:ENST00000621842.4:ENST00000615751.4:ENST00000614581.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	13	135	2	1.56109	2.048035	2.53498	0.0134069	0.00138346	0.101104	0.0338784
chr19	41868432	41868530	7071879	0	+	0.530612	(0.515,0.57]	chr19	706895	32	INTRON	INTRON	RPS19	ENSG00000105372.8	ENST00000598742.6:ENST00000600467.6:ENST00000601492.5:ENST00000221975.6:ENST00000598261.2:ENST00000593863.5:ENST00000598399.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	45	2	1.86362	2.048015	2.23241	0.0581268	0.0164561	0.188651	0.102235
chr11	12962198	12962292	4915792	0	-	0.5	(0.476,0.515]	chr11	460653	8	EXON_LNCRNA	EXON_LNCRNA	LINC00958	ENSG00000251381.8	ENST00000658243.1:ENST00000527945.2	lncRNA	lncRNA	lncRNA	lncRNA	9	88	2	1.5371	2.04797	2.55884	0.028567	0.00186081	0.126677	0.039946
chr21	29064379	29064467	7436957	0	-	0.238636	[0,0.28]	chr21	758520	5	INTRON	INTRON	CCT8	ENSG00000156261.13	ENST00000540844.5:ENST00000470450.5:ENST00000286788.9:ENST00000626972.2:ENST00000431234.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	151	2	1.90442	2.0479000000000003	2.19138	0.021886	0.00256392	0.11491	0.0466761
chr1	225412253	225412353	645593	0	-	0.25	[0,0.28]	chr1	76352	4	SS5_PROX	SS5_PROX:INTRON	LBR	ENSG00000143815.15	ENST00000272163.9:ENST00000338179.6:ENST00000651341.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	107	2	2.00184	2.04787	2.0939	0.0255167	0.00875794	0.120269	0.0846118
chr1	31927151	31927250	414323	0	-	0.414141	(0.408,0.44]	chr1	49920	26	INTRON	INTRON	PTP4A2	ENSG00000184007.22	ENST00000647444.2:ENST00000649841.1:ENST00000468531.1:ENST00000534796.5:ENST00000532289.1:ENST00000526960.1:ENST00000524384.5:ENST00000528840.1:ENST00000494444.2:ENST00000529477.5:ENST00000533408.1:ENST00000475464.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	69	2	1.9279	2.04768	2.16746	0.024436	0.00807087	0.12011	0.0806514
chr17	66368519	66368619	6662957	0	+	0.48	(0.476,0.515]	chr17	650326	43	INTRON	INTRON	PRKCA	ENSG00000154229.12	ENST00000413366.8:ENST00000578063.5:ENST00000284384.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	68	2	1.55865	2.0476799999999997	2.53671	0.034348	0.00624027	0.135807	0.0718843
chr7	99563663	99563762	3362744	0	+	0.393939	(0.378,0.408]	chr7	314142	4	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ZNF655	ENSG00000197343.11	ENST00000320583.9:ENST00000626122.2:ENST00000467680.5:ENST00000357864.6:ENST00000452314.5:ENST00000416144.5:ENST00000454654.5:ENST00000412636.5:ENST00000252713.9:ENST00000449244.5:ENST00000423973.5:ENST00000493947.5:ENST00000425063.5:ENST00000493277.5:ENST00000422422.5:ENST00000422164.5:ENST00000427931.5:ENST00000422647.5:ENST00000424881.5:ENST00000440391.5:ENST00000394163.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	15	150	2	1.66045	2.04758	2.43471	0.00710112	0.00112896	0.0756056	0.0307488
chr9	97563021	97563121	4172208	0	+	0.36	(0.35,0.378]	chr9	380099	2	SS5_PROX	SS5_PROX:INTRON	TMOD1	ENSG00000136842.14	ENST00000395211.6:ENST00000259365.9:ENST00000375175.1	protein_coding	protein_coding	protein_coding	protein_coding	10	113	2	1.97395	2.047535	2.12112	0.00872531	0.00369765	0.0788605	0.0561162
chr15	57018474	57018574	6033111	0	+	0.58	(0.57,1]	chr15	574669	167	INTRON	INTRON	TCF12	ENSG00000140262.18	ENST00000438423.6:ENST00000267811.9:ENST00000333725.10:ENST00000560190.5:ENST00000559609.5:ENST00000558908.5:ENST00000557843.5:ENST00000557947.5:ENST00000561152.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	10	53	2	1.99245	2.047525	2.1026	0.00568465	0.00326268	0.0678837	0.0508595
chr16	123006	123106	6425609	0	-	0.47	(0.44,0.476]	chr16	617370	1	SS5_PROX	SS5_PROX:INTRON	NPRL3	ENSG00000103148.17	ENST00000611875.5:ENST00000622194.4:ENST00000621703.4:ENST00000399953.7:ENST00000457916.5:ENST00000483663.5:ENST00000422814.5:ENST00000468260.5:ENST00000456528.5:ENST00000419636.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	56	2	1.41932	2.04752	2.67572	0.0391653	0.0212064	0.161534	0.113017
chr16	47496698	47496798	6343656	0	+	0.34	(0.32,0.35]	chr16	608849	324	INTRON	INTRON	PHKB	ENSG00000102893.17	ENST00000566037.6:ENST00000566044.5:ENST00000299167.12:ENST00000696809.1:ENST00000323584.10:ENST00000565424.2:ENST00000567402.5:ENST00000563376.5:ENST00000564873.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	59	2	1.46273	2.047415	2.6321	0.0451962	0.0268	0.163755	0.123349
chr2	10149630	10149730	690999	0	+	0.49	(0.476,0.515]	chr2	81105	36	INTRON	INTRON	RRM2	ENSG00000171848.16	ENST00000641498.1:ENST00000646978.1:ENST00000381786.7	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	4	40	2	1.52615	2.047415	2.56868	0.0739267	0.0256676	0.190914	0.133676
chr8	6745644	6745744	3695380	0	+	0.32	(0.28,0.32]	chr8	342860	5	PRIMIRNA	PRIMIRNA:INTRON	AGPAT5:MIR4659A	ENSG00000155189.12:ENSG00000266038.1	ENST00000285518.11:ENST00000523234.5:ENST00000518327.1:ENST00000530716.1:ENST00000580269.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript:primary_miRNA	7	87	2	1.38068	2.047415	2.71415	0.0590236	0.005045	0.189982	0.0621586
chr19	5657447	5657547	7005657	0	+	0.33	(0.32,0.35]	chr19	695017	1	SS5_PROX	SS5_PROX:INTRON	SAFB	ENSG00000160633.13	ENST00000589863.5:ENST00000588852.2:ENST00000292123.9:ENST00000592224.5:ENST00000454510.5:ENST00000589006.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	132	2	2.00192	2.04732	2.09272	0.00848699	0.00295812	0.0778788	0.0499765
chr2	235508437	235508537	1041479	0	+	0.38	(0.378,0.408]	chr2	111217	132	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	55	2	1.53052	2.0473	2.56408	0.0744544	0.00566993	0.192012	0.0678837
chr17	1839609	1839709	6546074	0	+	0.43	(0.408,0.44]	chr17	634926	91	INTRON	INTRON	RPA1	ENSG00000132383.12	ENST00000571058.5:ENST00000570451.5:ENST00000254719.10	protein_coding	protein_coding	protein_coding	protein_coding	5	46	2	1.6546400000000001	2.04726	2.43988	0.0398236	0.0329965	0.145298	0.143072
chr2	224532880	224532980	1335811	0	-	0.37	(0.35,0.378]	chr2	140143	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	CUL3	ENSG00000036257.14	ENST00000344951.8:ENST00000264414.9:ENST00000409096.5:ENST00000409777.5:ENST00000541548.5:ENST00000432260.2:ENST00000436172.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	49	2	1.90405	2.047195	2.19034	0.0482651	0.023941	0.171852	0.119443
chr9	37142432	37142532	4117877	0	+	0.21	[0,0.28]	chr9	375372	151	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000322831.6:ENST00000461038.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	108	2	1.46548	2.047175	2.62887	0.0721311	0.00205554	0.187433	0.0420839
chr10	27146266	27146362	4586208	0	-	0.3125	(0.28,0.32]	chr10	422770	8	UTR3	UTR3:EXON_MRNA:INTRON	YME1L1	ENSG00000136758.20	ENST00000376016.8:ENST00000613434.4:ENST00000326799.7:ENST00000491542.6:ENST00000427324.5:ENST00000396296.7:ENST00000477432.1	protein_coding	protein_coding	protein_coding	protein_coding	6	80	2	1.91611	2.047145	2.17818	0.0539102	0.00555379	0.164153	0.0675078
chr18	2677932	2678031	6865087	0	+	0.313131	(0.28,0.32]	chr18	679964	34	INTRON	INTRON	SMCHD1	ENSG00000101596.17	ENST00000320876.11:ENST00000688342.1:ENST00000684915.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	60	2	1.83325	2.047075	2.2609	0.0671429	0.0199548	0.183051	0.120668
chr16	90195523	90195622	6424848	0	+	0.434343	(0.408,0.44]	chr16	617268	9	INTRON	INTRON	LINC02193	ENSG00000260923.7	ENST00000568418.1:ENST00000656587.1:ENST00000668099.1:ENST00000569162.2:ENST00000665776.1:ENST00000669853.1:ENST00000668039.1:ENST00000658135.1:ENST00000663101.1:ENST00000663757.1:ENST00000568947.2	lncRNA	lncRNA	lncRNA	lncRNA	12	127	2	1.86926	2.047035	2.22481	0.00709955	0.00182717	0.0755905	0.0386611
chr14	102599423	102599522	5822601	0	+	0.282828	(0.28,0.32]	chr14	552490	57	INTRON	INTRON	RCOR1	ENSG00000089902.10	ENST00000262241.7	protein_coding	protein_coding	protein_coding	protein_coding	10	131	2	1.75729	2.047015	2.33674	0.0131247	0.00413289	0.0999321	0.0566868
chr21	38075656	38075756	7463638	0	-	0.56	(0.515,0.57]	chr21	760281	205	INTRON	INTRON	DSCR4	ENSG00000184029.9	ENST00000398948.5:ENST00000328264.7	lncRNA	lncRNA	lncRNA	lncRNA	14	121	2	1.49208	2.047015	2.60195	0.0205876	1.29924e-4	0.110999	0.00983066
chr2	177251130	177251230	1275711	0	-	0.4	(0.378,0.408]	chr2	134708	165	INTRON	INTRON	NFE2L2	ENSG00000116044.16	ENST00000397063.8:ENST00000464747.5:ENST00000397062.8:ENST00000446151.6:ENST00000449627.1:ENST00000448782.5:ENST00000430047.1:ENST00000586532.5:ENST00000421929.5:ENST00000423513.5:ENST00000588123.1:ENST00000477534.1:ENST00000462023.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	63	2	1.6165	2.04701	2.47752	0.0374185	0.0092831	0.155878	0.0817766
chr22	16794183	16794283	7546341	0	-	0.41	(0.408,0.44]	chr22	771315	94	INTRON	INTRON	XKR3	ENSG00000172967.8	ENST00000331428.5:ENST00000684488.1	protein_coding	protein_coding	protein_coding	protein_coding	5	53	2	2.03431	2.0468900000000003	2.05947	0.0333232	0.0154896	0.134145	0.108998
chr21	39251883	39251981	7464908	0	-	0.306122	(0.28,0.32]	chr21	760483	6	INTRON	INTRON	BRWD1	ENSG00000185658.14	ENST00000333229.6:ENST00000342449.8:ENST00000446924.5:ENST00000380800.7:ENST00000430093.5:ENST00000445245.5:ENST00000445668.5:ENST00000412604.1:ENST00000455867.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	96	2	1.68409	2.04684	2.40959	0.0548665	0.00207334	0.165463	0.0422762
chr22	19957821	19957920	7477565	0	+	0.373737	(0.35,0.378]	chr22	762571	35	INTRON	INTRON	COMT	ENSG00000093010.15	ENST00000676678.1:ENST00000403184.5:ENST00000361682.11:ENST00000403710.5:ENST00000407537.5:ENST00000467943.5:ENST00000678868.1:ENST00000678769.1:ENST00000428707.2:ENST00000412786.5:ENST00000207636.9:ENST00000406520.7:ENST00000678255.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	58	2	1.75081	2.046795	2.34278	0.0427459	0.0129593	0.148082	0.0991015
chr7	128342592	128342689	3635251	0	-	0.546392	(0.515,0.57]	chr7	337922	10	INTRON	INTRON	RBM28	ENSG00000106344.8	ENST00000223073.6:ENST00000415472.6:ENST00000478061.5:ENST00000459726.1	protein_coding	protein_coding	protein_coding	protein_coding	7	58	2	1.52049	2.046735	2.57298	0.0366813	0.00506495	0.138959	0.0646039
chr17	46214569	46214669	6785090	0	-	0.53	(0.515,0.57]	chr17	669254	208	INTRON	INTRON	KANSL1	ENSG00000120071.15	ENST00000574590.6:ENST00000572904.6:ENST00000575318.6:ENST00000648792.1:ENST00000639150.1:ENST00000639375.1:ENST00000638269.1:ENST00000639356.1:ENST00000574655.6:ENST00000639099.1:ENST00000638902.1:ENST00000576739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	39	2	1.56838	2.04671	2.52504	0.0424458	0.029342	0.161763	0.128055
chr3	39409154	39409239	1401809	0	+	0.364706	(0.35,0.378]	chr3	147217	3	SS5_PROX	SS5_PROX:INTRON	RPSA	ENSG00000168028.14	ENST00000301821.11:ENST00000458478.5:ENST00000443003.2:ENST00000444512.2:ENST00000478027.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	15	191	2	1.69756	2.0467049999999998	2.39585	0.0149371	3.72075e-4	0.107462	0.0178948
chr11	61149243	61149342	4955612	0	-	0.454545	(0.44,0.476]	chr11	465541	39	INTRON	INTRON	VPS37C	ENSG00000167987.11	ENST00000301765.10:ENST00000538036.1:ENST00000536000.1:ENST00000535818.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	45	2	1.85146	2.046675	2.24189	0.0545846	0.0193405	0.182529	0.108861
chr4	159114120	159114220	2073610	0	+	0.46	(0.44,0.476]	chr4	205172	95	INTRON	INTRON	RAPGEF2	ENSG00000109756.10	ENST00000644474.1:ENST00000691494.1:ENST00000505478.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	50	2	1.35267	2.04665	2.74063	0.060678	0.0176095	0.192323	0.105143
chr5	179830361	179830459	2561753	0	+	0.44898	(0.44,0.476]	chr5	245049	48	INTRON	INTRON	SQSTM1	ENSG00000161011.20	ENST00000389805.9:ENST00000510187.5:ENST00000360718.5:ENST00000466342.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	50	2	1.35267	2.04665	2.74063	0.060678	0.0176095	0.192323	0.105143
chr9	72363976	72364068	4266272	0	-	0.467391	(0.44,0.476]	chr9	392645	5	EXON_LNCRNA	EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ZFAND5	ENSG00000107372.13	ENST00000376962.10:ENST00000237937.7:ENST00000376960.8:ENST00000488164.5:ENST00000343431.6:ENST00000376956.3:ENST00000487330.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	18	178	2	2.01805	2.04664	2.07523	0.00332266	6.71591e-4	0.0512081	0.0235155
chr6	158560831	158560931	3021606	0	+	0.5	(0.476,0.515]	chr6	281792	2	INTRON	INTRON	TMEM181	ENSG00000146433.10	ENST00000367090.4:ENST00000684151.1	protein_coding	protein_coding	protein_coding	protein_coding	13	122	2	1.56302	2.046635	2.53025	0.0127429	0.0011567	0.0987441	0.0310955
chr22	19398786	19398886	7554091	0	-	0.5	(0.476,0.515]	chr22	772292	3	INTRON	INTRON	HIRA:C22orf39	ENSG00000100084.14:ENSG00000242259.9	ENST00000263208.5:ENST00000340170.8:ENST00000509549.5:ENST00000464189.5:ENST00000452818.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	16	151	2	1.53677	2.046575	2.55638	0.0124657	3.87508e-4	0.0922533	0.0177751
chr4	70959340	70959440	1971078	0	+	0.46	(0.44,0.476]	chr4	197589	3	SS5_PROX	SS5_PROX:INTRON	MOB1B	ENSG00000173542.9	ENST00000502869.5:ENST00000509041.5:ENST00000309395.7:ENST00000396051.2:ENST00000511449.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	81	2	1.42079	2.04653	2.67227	0.0526065	0.0010793	0.160978	0.0300133
chr5	180801982	180802080	2783226	0	-	0.428571	(0.408,0.44]	chr5	262780	58	INTRON	INTRON	MGAT1	ENSG00000131446.17	ENST00000307826.5:ENST00000333055.8:ENST00000393340.7:ENST00000446023.6:ENST00000427865.2:ENST00000504671.1:ENST00000506889.1:ENST00000514283.1:ENST00000512695.1:ENST00000506269.1:ENST00000514438.1:ENST00000502678.1:ENST00000513431.5:ENST00000507384.1:ENST00000504385.5:ENST00000514760.1:ENST00000505682.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	44	2	1.88062	2.0465	2.21238	0.0534548	0.0193525	0.162935	0.119831
chr22	41835556	41835656	7526022	0	+	0.54	(0.515,0.57]	chr22	769353	18	INTRON	INTRON	SREBF2	ENSG00000198911.12	ENST00000612482.4:ENST00000361204.9:ENST00000424354.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	81	2	1.72899	2.046495	2.364	0.00899744	0.00447856	0.0851009	0.0593175
chr7	128047854	128047953	3406386	0	+	0.474747	(0.44,0.476]	chr7	318198	50	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000486037.1:ENST00000484767.5:ENST00000470723.5:ENST00000470463.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	54	2	1.94723	2.04648	2.14573	0.0238593	0.0227424	0.129075	0.117618
chr1	31035351	31035451	412592	0	-	0.35	(0.32,0.35]	chr1	49733	61	INTRON	INTRON	PUM1	ENSG00000134644.16	ENST00000426105.7:ENST00000373747.7:ENST00000257075.9:ENST00000424085.6:ENST00000525843.5:ENST00000440538.6:ENST00000373741.8:ENST00000373742.6:ENST00000526215.5:ENST00000525948.5:ENST00000480602.1:ENST00000524516.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	100	2	1.53859	2.046395	2.5542	0.0534261	9.3945e-4	0.162935	0.0280187
chr1	109383078	109383178	520871	0	-	0.32	(0.28,0.32]	chr1	61195	131	INTRON	INTRON	SORT1	ENSG00000134243.12	ENST00000538502.5:ENST00000256637.8:ENST00000493736.5:ENST00000482236.5:ENST00000633956.1:ENST00000471996.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	77	2	1.83325	2.0463199999999997	2.25939	0.021772	0.0199548	0.120668	0.11491
chr1	173479359	173479457	255532	0	+	0.295918	(0.28,0.32]	chr1	30493	15	INTRON	INTRON	PRDX6	ENSG00000117592.9	ENST00000460950.1:ENST00000340385.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	16	182	2	1.5438	2.04631	2.54882	0.0110403	0.00175276	0.0927725	0.0376491
chr10	84147550	84147647	4477121	0	+	0.28866000000000003	(0.28,0.32]	chr10	412143	22	INTRON	INTRON	GHITM	ENSG00000165678.22	ENST00000691609.1:ENST00000372134.6:ENST00000690587.1:ENST00000686583.1:ENST00000690067.1:ENST00000691751.1:ENST00000687085.1:ENST00000692871.1:ENST00000691155.1:ENST00000690920.1:ENST00000688802.1:ENST00000686247.1:ENST00000690283.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	50	2	1.76378	2.046245	2.32871	0.0581621	0.0395495	0.167723	0.161534
chr2	151427004	151427103	893382	0	+	0.30303	(0.28,0.32]	chr2	98908	34	INTRON	INTRON	RIF1	ENSG00000080345.18	ENST00000453091.6:ENST00000428287.6:ENST00000444746.7:ENST00000243326.9:ENST00000414861.6:ENST00000430328.6	protein_coding	protein_coding	protein_coding	protein_coding	9	120	2	1.87474	2.04624	2.21774	0.0115687	0.00649055	0.0962115	0.0699952
chr12	42375673	42375773	5118731	0	+	0.29	(0.28,0.32]	chr12	482964	2	INTRON	INTRON	PPHLN1	ENSG00000134283.18	ENST00000549190.5:ENST00000337898.10:ENST00000395580.7:ENST00000610488.4:ENST00000619544.4:ENST00000613154.4:ENST00000551723.5:ENST00000395568.6:ENST00000256678.12:ENST00000358314.12:ENST00000449194.6:ENST00000552761.5:ENST00000317560.13:ENST00000432191.6:ENST00000552202.5:ENST00000552794.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	41	2	1.90263	2.04619	2.18975	0.0776042	0.0503272	0.196285	0.17488
chr16	58595162	58595261	6496033	0	-	0.292929	(0.28,0.32]	chr16	628630	59	INTRON	INTRON	CNOT1	ENSG00000125107.19	ENST00000317147.10:ENST00000569240.5:ENST00000567188.5:ENST00000441024.6:ENST00000565605.5:ENST00000564557.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	41	2	1.90263	2.04619	2.18975	0.0776042	0.0503272	0.196285	0.17488
chr2	26063573	26063673	713394	0	+	0.3	(0.28,0.32]	chr2	82440	209	INTRON	INTRON	RAB10	ENSG00000084733.11	ENST00000264710.5:ENST00000495146.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	41	2	1.90263	2.04619	2.18975	0.0776042	0.0503272	0.196285	0.17488
chr3	25655447	25655547	1642075	0	-	0.32	(0.28,0.32]	chr3	168598	96	INTRON	INTRON	TOP2B	ENSG00000077097.16	ENST00000264331.9:ENST00000435706.6:ENST00000424225.1	protein_coding	protein_coding	protein_coding	protein_coding	3	41	2	1.90263	2.04619	2.18975	0.0776042	0.0503272	0.196285	0.17488
chr6	20555261	20555360	2828591	0	+	0.292929	(0.28,0.32]	chr6	265644	62	INTRON	INTRON	CDKAL1	ENSG00000145996.11	ENST00000274695.8:ENST00000613575.4:ENST00000378610.1	protein_coding	protein_coding	protein_coding	protein_coding	3	41	2	1.90263	2.04619	2.18975	0.0776042	0.0503272	0.196285	0.17488
chr7	128578533	128578618	3407832	0	+	0.305882	(0.28,0.32]	chr7	318347	1	SS3_PROX	SS3_PROX:INTRON	ENSG00000280828:ENSG00000242588	ENSG00000280828.1:ENSG00000242588.6	ENST00000479267.2:ENST00000605862.5	lncRNA	lncRNA	lncRNA:unprocessed_pseudogene	lncRNA:unprocessed_pseudogene	3	41	2	1.90263	2.04619	2.18975	0.0776042	0.0503272	0.196285	0.17488
chr7	155655295	155655395	3452001	0	+	0.32	(0.28,0.32]	chr7	322642	100	INTRON	INTRON	RBM33	ENSG00000184863.11	ENST00000287912.7:ENST00000401878.8:ENST00000392759.7	protein_coding	protein_coding	protein_coding	protein_coding	3	41	2	1.90263	2.04619	2.18975	0.0776042	0.0503272	0.196285	0.17488
chr8	98684089	98684189	3998740	0	-	0.32	(0.28,0.32]	chr8	366070	325	INTRON	INTRON	STK3	ENSG00000104375.17	ENST00000617590.1:ENST00000419617.7:ENST00000523601.5:ENST00000518165.5:ENST00000521649.5:ENST00000424861.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	41	2	1.90263	2.04619	2.18975	0.0776042	0.0503272	0.196285	0.17488
chr7	75371922	75372022	3337788	0	+	0.43	(0.408,0.44]	chr7	310752	44	INTRON	INTRON	STAG3L1	ENSG00000205583.14	ENST00000619870.4:ENST00000404291.3	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	7	73	2	1.96973	2.046165	2.1226	0.012812	0.0108773	0.0926667	0.0923273
chr10	119060345	119060445	4704713	0	-	0.32	(0.28,0.32]	chr10	433973	2	SS5_PROX	SS5_PROX:INTRON	EIF3A	ENSG00000107581.13	ENST00000369144.8:ENST00000541549.2	protein_coding	protein_coding	protein_coding	protein_coding	4	51	2	1.90249	2.04612	2.18975	0.0776042	0.0261803	0.196285	0.133676
chr1	227309004	227309104	651626	0	-	0.41	(0.408,0.44]	chr1	77110	439	INTRON	INTRON	CDC42BPA	ENSG00000143776.20	ENST00000366766.8:ENST00000366769.7:ENST00000334218.9:ENST00000366767.7:ENST00000366764.8:ENST00000478573.6:ENST00000682551.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	93	2	1.99397	2.046075	2.09818	0.00772939	0.00610802	0.0757122	0.0706941
chr1	246642829	246642927	350757	0	+	0.428571	(0.408,0.44]	chr1	40533	4	INTRON	INTRON	CNST	ENSG00000162852.14	ENST00000483271.1:ENST00000366513.9:ENST00000366512.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	54	2	1.87977	2.046075	2.21238	0.0282738	0.0193525	0.125825	0.119831
chr1	70222102	70222183	142596	0	+	0.407407	(0.378,0.408]	chr1	15971	3	SS5_PROX	SS5_PROX:INTRON	SRSF11	ENSG00000116754.14	ENST00000370951.5:ENST00000463877.1:ENST00000687381.1:ENST00000370950.7:ENST00000475204.5:ENST00000370949.2:ENST00000395136.7:ENST00000473950.5:ENST00000469170.5:ENST00000486667.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	11	113	2	1.88781	2.046065	2.20432	0.00529064	0.00486383	0.0640618	0.0636343
chr16	70558699	70558797	6385509	0	+	0.489796	(0.476,0.515]	chr16	613957	13	INTRON	INTRON	SF3B3	ENSG00000189091.13	ENST00000302516.10	protein_coding	protein_coding	protein_coding	protein_coding	5	53	2	1.68092	2.046065	2.41121	0.0474026	0.0110342	0.169265	0.0873897
chr2	112663125	112663225	852247	0	+	0.37	(0.35,0.378]	chr2	95616	2	UTR3	UTR3:EXON_MRNA	SLC20A1	ENSG00000144136.11	ENST00000272542.8:ENST00000490674.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	80	2	1.42644	2.0460599999999998	2.66568	0.0390715	0.00496487	0.161228	0.0615009
chr12	104487211	104487311	5210986	0	+	0.4	(0.378,0.408]	chr12	493315	293	INTRON	INTRON	CHST11	ENSG00000171310.11	ENST00000303694.6:ENST00000547956.1:ENST00000549260.5:ENST00000546689.1	protein_coding	protein_coding	protein_coding	protein_coding	7	76	2	1.82119	2.045995	2.2708	0.0214651	0.00646593	0.114274	0.073179
chr12	46360720	46360817	5316567	0	-	0.309278	(0.28,0.32]	chr12	505763	27	UTR3	UTR3:EXON_MRNA	SLC38A2	ENSG00000134294.14	ENST00000256689.10:ENST00000549258.5:ENST00000551374.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	93	2	1.99988	2.0459300000000002	2.09198	0.0228757	0.00780964	0.118056	0.0788246
chr4	39711167	39711266	1953122	0	+	0.545455	(0.515,0.57]	chr4	195630	124	INTRON	INTRON	UBE2K	ENSG00000078140.14	ENST00000510934.5:ENST00000261427.10:ENST00000438068.6:ENST00000513231.5:ENST00000503368.5:ENST00000445950.2:ENST00000510719.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	14	116	2	1.48662	2.045735	2.60485	0.0177755	2.42252e-4	0.105721	0.0137115
chr1	55061856	55061956	108711	0	+	0.51	(0.476,0.515]	chr1	14224	3	SS5_PROX	SS5_PROX:INTRON	PCSK9	ENSG00000169174.11	ENST00000302118.5:ENST00000673903.1:ENST00000490692.1:ENST00000673913.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	121	2	1.87833	2.04573	2.21313	0.00471013	0.00401502	0.0600108	0.0578059
chr1	6199084	6199179	366196	0	-	0.631579	(0.57,1]	chr1	43029	15	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	RPL22	ENSG00000116251.11	ENST00000234875.9:ENST00000480661.1:ENST00000497965.5:ENST00000471204.5:ENST00000465387.5:ENST00000462296.5:ENST00000465335.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	12	60	2	1.69458	2.04568	2.39678	0.00764792	0.00143653	0.0753163	0.0347139
chr3	129179210	129179309	1815283	0	-	0.474747	(0.44,0.476]	chr3	182484	71	INTRON	INTRON	CNBP	ENSG00000169714.17	ENST00000422453.7:ENST00000502976.5:ENST00000451728.6:ENST00000446936.6:ENST00000504813.5:ENST00000500450.6:ENST00000441626.6:ENST00000502372.1:ENST00000512338.1:ENST00000507573.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	73	2	1.5191	2.04555	2.572	0.0526241	0.00173736	0.160983	0.03851
chr1	100145035	100145134	172202	0	+	0.333333	(0.32,0.35]	chr1	18699	5	INTRON	INTRON	TRMT13	ENSG00000122435.11	ENST00000370141.8	protein_coding	protein_coding	protein_coding	protein_coding	3	39	2	1.77704	2.0455449999999997	2.31405	0.0719969	0.0517107	0.187322	0.176696
chr17	15519841	15519941	6732027	0	-	0.51	(0.476,0.515]	chr17	660302	28	INTRON	INTRON	TVP23C-CDRT4:TVP23C	ENSG00000259024.6:ENSG00000175106.17	ENST00000522212.6:ENST00000557349.5:ENST00000481756.7:ENST00000518506.4:ENST00000225576.7:ENST00000581273.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	115	2	1.75116	2.0455300000000003	2.3399	0.00687667	0.00275491	0.0749442	0.0469265
chr13	113185756	113185854	5651820	0	-	0.397959	(0.378,0.408]	chr13	538587	3	EXON_LNCRNA	EXON_LNCRNA:SS3_PROX:INTRON	PCID2	ENSG00000126226.22	ENST00000337344.9:ENST00000622406.4:ENST00000375479.6:ENST00000375477.5:ENST00000246505.9:ENST00000375459.5:ENST00000493650.5:ENST00000375457.2:ENST00000473462.5:ENST00000475433.5:ENST00000480971.5:ENST00000484641.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	99	2	1.78596	2.045475	2.30499	0.00765583	0.00683258	0.0779344	0.0713163
chr14	21263280	21263377	5835106	0	-	0.226804	[0,0.28]	chr14	554468	8	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HNRNPC	ENSG00000092199.19	ENST00000336053.10:ENST00000553300.6:ENST00000554969.5:ENST00000556142.5:ENST00000554455.5:ENST00000430246.6:ENST00000553753.5:ENST00000555309.5:ENST00000555914.5:ENST00000557442.5:ENST00000556628.5:ENST00000556513.5:ENST00000555883.5:ENST00000557201.5:ENST00000420743.6:ENST00000554539.5:ENST00000554383.5:ENST00000555215.5:ENST00000555137.5:ENST00000554891.5:ENST00000556226.5:ENST00000555176.5:ENST00000553614.5:ENST00000557336.1:ENST00000557768.1:ENST00000557033.1:ENST00000555127.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	23	343	2	1.81287	2.04529	2.27771	0.00697949	4.93172e-4	0.0718189	0.0201044
chr1	226063465	226063537	327773	0	+	0.402778	(0.378,0.408]	chr1	37740	1	UTR5	UTR5:EXON_MRNA:INTRON	H3-3A	ENSG00000163041.13	ENST00000366816.5:ENST00000366814.3:ENST00000366815.10:ENST00000653960.1:ENST00000655399.1:ENST00000667897.1:ENST00000656829.1:ENST00000666609.1:ENST00000661429.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	15	158	2	1.85844	2.045265	2.23209	0.00712194	6.21031e-4	0.0723634	0.0223951
chr11	58596757	58596857	4793920	0	+	0.42	(0.408,0.44]	chr11	443838	115	INTRON	INTRON	ZFP91	ENSG00000186660.15	ENST00000316059.7	protein_coding	protein_coding	protein_coding	protein_coding	4	44	2	1.81572	2.04518	2.27464	0.0626779	0.0158016	0.175915	0.109464
chr6	2889762	2889862	3047334	0	-	0.43	(0.408,0.44]	chr6	283507	26	UTR3	UTR3:EXON_MRNA	SERPINB9	ENSG00000170542.6	ENST00000380698.5	protein_coding	protein_coding	protein_coding	protein_coding	4	44	2	1.81572	2.04518	2.27464	0.0626779	0.0158016	0.175915	0.109464
chr2	175125109	175125208	1271904	0	-	0.30303	(0.28,0.32]	chr2	134444	32	INTRON	INTRON	ATF2	ENSG00000115966.18	ENST00000345739.9:ENST00000426833.7:ENST00000264110.7:ENST00000409437.5:ENST00000409635.5:ENST00000435004.6:ENST00000428760.5:ENST00000392544.5:ENST00000417080.5:ENST00000456655.5:ENST00000421438.5:ENST00000429579.5:ENST00000415955.5:ENST00000409499.5:ENST00000435231.6:ENST00000437522.5:ENST00000409833.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	67	2	1.69688	2.045175	2.39347	0.0504457	0.0219684	0.156383	0.123836
chr4	68344975	68345074	2154838	0	-	0.464646	(0.44,0.476]	chr4	212290	5	INTRON	INTRON	YTHDC1	ENSG00000083896.13	ENST00000344157.9:ENST00000355665.7:ENST00000579690.5:ENST00000510746.1	protein_coding	protein_coding	protein_coding	protein_coding	4	39	2	1.62896	2.045155	2.46135	0.0546679	0.0374637	0.182674	0.140008
chr6	43784725	43784823	2872214	0	+	0.653061	(0.57,1]	chr6	272368	2	UTR3	UTR3:EXON_MRNA	VEGFA	ENSG00000112715.26	ENST00000672860.3:ENST00000372067.8:ENST00000425836.8:ENST00000372064.9:ENST00000372077.8:ENST00000520948.5:ENST00000523950.5:ENST00000230480.10:ENST00000480614.1:ENST00000497139.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	17	77	2	1.64663	2.045095	2.44356	0.00361637	0.00109465	0.0554592	0.0304174
chr15	90981033	90981126	6259520	0	-	0.537634	(0.515,0.57]	chr15	597320	1	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PRC1:ENSG00000284946	ENSG00000198901.14:ENSG00000284946.1	ENST00000394249.8:ENST00000361188.9:ENST00000643536.1:ENST00000442656.6:ENST00000647331.1:ENST00000556982.1:ENST00000553494.5:ENST00000557763.5:ENST00000417173.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	45	2	2.00468	2.0450749999999998	2.08547	0.0289426	0.0166344	0.1274	0.110511
chr8	55818201	55818300	3754250	0	+	0.555556	(0.515,0.57]	chr8	349240	47	INTRON	INTRON	TGS1	ENSG00000137574.11	ENST00000260129.6:ENST00000523948.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	34	2	1.7492	2.045035	2.34087	0.0469761	0.0382504	0.15832	0.151917
chr16	89424407	89424507	6542939	0	-	0.42	(0.408,0.44]	chr16	634275	23	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	64	2	2.00629	2.045025	2.08376	0.0189661	0.0129886	0.108861	0.0991656
chr1	30949926	30950026	411714	0	-	0.36	(0.35,0.378]	chr1	49634	4	SS5_PROX	SS5_PROX:INTRON	PUM1	ENSG00000134644.16	ENST00000426105.7:ENST00000373747.7:ENST00000257075.9:ENST00000424085.6:ENST00000525843.5:ENST00000440538.6:ENST00000498419.5:ENST00000373741.8:ENST00000373742.6:ENST00000529846.5:ENST00000525997.1:ENST00000527498.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	87	2	1.60373	2.04498	2.48623	0.016652900000000002	0.00938784	0.110511	0.0817766
chr7	138470099	138470199	3434739	0	+	0.35	(0.32,0.35]	chr7	319959	84	INTRON	INTRON	TRIM24	ENSG00000122779.18	ENST00000343526.9:ENST00000415680.6:ENST00000497516.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	62	2	1.94202	2.044975	2.14793	0.0486128	0.0110079	0.153946	0.0927187
chr1	16323617	16323717	382331	0	-	0.52	(0.515,0.57]	chr1	44888	78	INTRON	INTRON	FBXO42	ENSG00000037637.11	ENST00000375592.8	protein_coding	protein_coding	protein_coding	protein_coding	13	106	2	1.89343	2.044925	2.19642	0.00442355	0.00243616	0.0588897	0.0456604
chr4	73249684	73249783	2160736	0	-	0.545455	(0.515,0.57]	chr4	212799	267	INTRON	INTRON	ANKRD17	ENSG00000132466.20	ENST00000358602.9:ENST00000558247.5:ENST00000330838.10:ENST00000561029.1	protein_coding	protein_coding	protein_coding	protein_coding	5	45	2	1.81744	2.04491	2.27238	0.031028	0.0161808	0.143457	0.101453
chr6	57155833	57155932	2878736	0	+	0.343434	(0.32,0.35]	chr6	273319	14	INTRON	INTRON	ZNF451	ENSG00000112200.17	ENST00000357489.7:ENST00000370706.9:ENST00000504603.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	14	140	2	1.52745	2.044905	2.56236	0.0122025	0.002892	0.0967881	0.0476886
chr6	139372941	139373036	3237872	0	-	0.273684	[0,0.28]	chr6	300990	13	UTR3	UTR3:EXON_MRNA	CITED2	ENSG00000164442.10	ENST00000367651.4:ENST00000536159.2:ENST00000537332.2	protein_coding	protein_coding	protein_coding	protein_coding	4	64	2	1.98291	2.044895	2.10688	0.0494143	0.0307985	0.156195	0.143385
chrX	44895086	44895186	7648821	0	+	0.38	(0.378,0.408]	chrX	782726	207	INTRON	INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000675440.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000621147.5:ENST00000475233.1:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	41	2	1.78011	2.04486	2.30961	0.055088	0.0356367	0.165463	0.151629
chr6	15520350	15520450	2825711	0	+	0.29	(0.28,0.32]	chr6	265291	2	UTR3	UTR3:EXON_MRNA	JARID2	ENSG00000008083.14	ENST00000341776.7:ENST00000397311.4	protein_coding	protein_coding	protein_coding	protein_coding	5	57	2	1.51776	2.044855	2.57195	0.0528371	0.0331711	0.178899	0.133994
chr8	17994517	17994616	3708486	0	+	0.383838	(0.378,0.408]	chr8	343990	5	INTRON	INTRON	PCM1	ENSG00000078674.19	ENST00000325083.13:ENST00000519253.5:ENST00000524226.5:ENST00000522275.5	protein_coding	protein_coding	protein_coding	protein_coding	8	84	2	1.98727	2.044695	2.10212	0.0141232	0.00639052	0.0959618	0.0726555
chr22	16796876	16796976	7546368	0	-	0.39	(0.378,0.408]	chr22	771315	121	INTRON	INTRON	XKR3	ENSG00000172967.8	ENST00000331428.5:ENST00000684488.1	protein_coding	protein_coding	protein_coding	protein_coding	6	66	2	1.94906	2.044675	2.14029	0.023282	0.0106742	0.118176	0.0917199
chr5	138570459	138570543	2732859	0	-	0.404762	(0.378,0.408]	chr5	257480	1	SS5_PROX	SS5_PROX:INTRON	HSPA9	ENSG00000113013.16	ENST00000677693.1:ENST00000677064.1:ENST00000678300.1:ENST00000677425.1:ENST00000649578.2:ENST00000677988.1:ENST00000297185.9:ENST00000677527.1:ENST00000678794.1:ENST00000677553.1:ENST00000678384.1:ENST00000678051.1:ENST00000677066.1:ENST00000649692.2:ENST00000678551.1:ENST00000524109.2:ENST00000507115.6:ENST00000507097.5:ENST00000504902.6:ENST00000508003.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	76	2	1.86598	2.044665	2.22335	0.0300232	0.00388279	0.129138	0.0567196
chr19	38678224	38678324	7066034	0	+	0.34	(0.32,0.35]	chr19	705486	296	INTRON	INTRON	ACTN4	ENSG00000130402.13	ENST00000252699.7:ENST00000588618.5:ENST00000440400.2:ENST00000424234.7:ENST00000589528.1:ENST00000390009.7:ENST00000495553.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	62	2	1.78201	2.0446600000000004	2.30731	0.0365003	0.0176772	0.153759	0.10525
chr17	37350451	37350550	6762486	0	-	0.454545	(0.44,0.476]	chr17	664970	47	INTRON	INTRON	ACACA	ENSG00000278540.5	ENST00000616317.5:ENST00000614428.4:ENST00000613146.4:ENST00000615229.4:ENST00000621960.1:ENST00000617548.1:ENST00000616352.4:ENST00000614789.4:ENST00000612007.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:non_stop_decay:nonsense_mediated_decay	6	60	2	1.75023	2.04461	2.33899	0.0240995	0.0142027	0.129929	0.0959987
chr9	72173449	72173549	4141506	0	+	0.53	(0.515,0.57]	chr9	377412	234	INTRON	INTRON	GDA	ENSG00000119125.17	ENST00000545168.5:ENST00000238018.8:ENST00000358399.8:ENST00000376986.5:ENST00000475764.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	59	2	1.86007	2.04457	2.22907	0.0526611	0.00383939	0.178401	0.0542786
chr1	173865175	173865273	587064	0	-	0.357143	(0.35,0.378]	chr1	70637	14	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GAS5	ENSG00000234741.9	ENST00000651080.1:ENST00000687189.1:ENST00000689238.1:ENST00000687549.1:ENST00000687435.1:ENST00000687987.1:ENST00000686995.1:ENST00000689958.1:ENST00000687063.1:ENST00000689895.1:ENST00000690228.1:ENST00000688573.1:ENST00000412059.6:ENST00000685107.1:ENST00000449289.6:ENST00000691213.1:ENST00000436285.6:ENST00000436656.6:ENST00000422008.6:ENST00000691137.1:ENST00000450589.6:ENST00000448718.6:ENST00000693348.1:ENST00000690349.1:ENST00000690761.1:ENST00000687022.1:ENST00000686878.1:ENST00000430245.5:ENST00000422183.6:ENST00000442067.6:ENST00000693450.1:ENST00000690448.1:ENST00000416952.6:ENST00000688895.1:ENST00000687710.1:ENST00000693030.1:ENST00000692671.1:ENST00000688557.1:ENST00000456812.7:ENST00000431268.5:ENST00000455838.6:ENST00000449589.6:ENST00000444470.6:ENST00000693469.1:ENST00000685758.1:ENST00000458220.2:ENST00000687409.1:ENST00000688952.1:ENST00000689860.1:ENST00000686918.1:ENST00000691056.1:ENST00000689469.1:ENST00000685039.1:ENST00000414075.6:ENST00000692994.1:ENST00000691982.1:ENST00000690172.1:ENST00000686460.1:ENST00000691712.1:ENST00000685159.1:ENST00000685008.1:ENST00000452197.5:ENST00000454068.5:ENST00000650796.1:ENST00000451607.5:ENST00000693521.1:ENST00000690941.1:ENST00000693459.1:ENST00000686231.1:ENST00000684949.1:ENST00000425771.6:ENST00000432536.5:ENST00000456293.5	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	121	1336	2	1.96251	2.04454	2.12657	1.29248e-4	1.28854e-4	0.0103343	0.00978738
chr7	6461779	6461878	3478139	0	-	0.242424	[0,0.28]	chr7	325446	8	UTR3	UTR3:EXON_MRNA:INTRON	DAGLB:KDELR2	ENSG00000164535.15:ENSG00000136240.10	ENST00000436575.5:ENST00000463747.1:ENST00000258739.9:ENST00000454368.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	12	160	2	1.70538	2.04453	2.38368	0.00977975	0.00776612	0.0877296	0.0757731
chr9	135935185	135935282	4372294	0	-	0.391753	(0.378,0.408]	chr9	402502	13	INTRON	INTRON	UBAC1	ENSG00000130560.9	ENST00000371756.4:ENST00000489050.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	14	147	2	1.9089	2.0444750000000003	2.18005	0.00763296	8.27827e-4	0.0752119	0.0263576
chr11	3756399	3756498	4894751	0	-	0.343434	(0.32,0.35]	chr11	458876	26	INTRON	INTRON	NUP98	ENSG00000110713.17	ENST00000359171.8:ENST00000324932.12:ENST00000650171.1:ENST00000355260.7:ENST00000397004.8:ENST00000397007.8:ENST00000527104.5:ENST00000529379.1:ENST00000397013.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	52	2	1.95271	2.044455	2.1362	0.0431213	0.0291083	0.162255	0.128029
chr19	18918922	18919022	7153367	0	-	0.45	(0.44,0.476]	chr19	722999	3	SS5_PROX	SS5_PROX:INTRON	COPE	ENSG00000105669.14	ENST00000262812.9:ENST00000349893.8:ENST00000600932.5:ENST00000351079.8:ENST00000593827.1:ENST00000597646.5:ENST00000599964.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	44	2	2.00609	2.04443	2.08277	0.0360127	0.0309998	0.152355	0.13151
chr4	70934227	70934327	1970824	0	+	0.46	(0.44,0.476]	chr4	197571	313	INTRON	INTRON	MOB1B	ENSG00000173542.9	ENST00000502869.5:ENST00000509041.5:ENST00000309395.7:ENST00000396051.2:ENST00000511449.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	44	2	2.00609	2.04443	2.08277	0.0360127	0.0309998	0.152355	0.13151
chr2	169587186	169587286	906498	0	+	0.52	(0.515,0.57]	chr2	100017	19	INTRON	INTRON	PPIG	ENSG00000138398.17	ENST00000678088.1:ENST00000677392.1:ENST00000433207.6:ENST00000679324.1:ENST00000414307.6:ENST00000676508.1:ENST00000260970.8:ENST00000678695.1:ENST00000409714.7:ENST00000530152.5:ENST00000677750.1:ENST00000676557.1:ENST00000678721.1:ENST00000462903.6:ENST00000676756.1:ENST00000679107.1:ENST00000678499.1:ENST00000678638.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	87	2	1.43515	2.04439	2.65363	0.0254996	0.00105762	0.12024	0.0299618
chr14	49768383	49768468	5715764	0	+	0.505882	(0.476,0.515]	chr14	542733	4	UTR5	UTR5:EXON_MRNA	KLHDC2	ENSG00000165516.11	ENST00000555739.5:ENST00000298307.10:ENST00000554589.5:ENST00000557247.1:ENST00000555443.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	64	2	1.91525	2.04436	2.17347	0.0232571	0.010447	0.127416	0.0855102
chr10	49978442	49978540	4433001	0	+	0.530612	(0.515,0.57]	chr10	408716	19	INTRON	INTRON	TIMM23B-AGAP6	ENSG00000178440.8	ENST00000651763.1:ENST00000651208.1:ENST00000429104.1:ENST00000444438.2	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	5	40	2	1.43029	2.044315	2.65834	0.0645632	0.0187418	0.179192	0.117523
chr9	131152893	131152992	4215908	0	+	0.474747	(0.44,0.476]	chr9	386591	6	INTRON	INTRON	NUP214	ENSG00000126883.19	ENST00000695497.1:ENST00000695498.1:ENST00000695496.1:ENST00000695495.1:ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000651022.1:ENST00000525980.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	84	2	1.17605	2.0442850000000004	2.91252	0.060782	0.00164027	0.192641	0.0369207
chr12	50405011	50405111	5136374	0	+	0.48	(0.476,0.515]	chr12	484352	18	INTRON	INTRON	LARP4	ENSG00000161813.23	ENST00000550522.5:ENST00000293618.12:ENST00000429001.7:ENST00000398473.7:ENST00000548174.5:ENST00000548697.5:ENST00000548993.5:ENST00000522085.5:ENST00000518444.5:ENST00000551886.5:ENST00000523389.5:ENST00000518561.5:ENST00000347328.9:ENST00000550260.1:ENST00000517559.5:ENST00000552445.1	protein_coding	protein_coding	protein_coding	protein_coding	10	100	2	1.96786	2.04422	2.12058	0.00686728	0.00462407	0.071646	0.062717
chr1	36294822	36294919	73647	0	+	0.474227	(0.44,0.476]	chr1	9418	5	INTRON	INTRON	THRAP3	ENSG00000054118.15	ENST00000469141.6:ENST00000648638.1:ENST00000354618.10	protein_coding	protein_coding	protein_coding	protein_coding	13	129	2	2.02923	2.0442150000000003	2.0592	0.00556585	0.0017848	0.0648867	0.0392749
chr1	17415685	17415783	384740	0	-	0.316327	(0.28,0.32]	chr1	45459	16	INTRON	INTRON	RCC2	ENSG00000179051.14	ENST00000375436.9:ENST00000375433.3	protein_coding	protein_coding	protein_coding	protein_coding	18	236	2	1.83029	2.044165	2.25804	0.00407076	0.00141727	0.058009	0.0340865
chr10	22704636	22704736	4580405	0	-	0.36	(0.35,0.378]	chr10	422046	101	INTRON	INTRON	PIP4K2A	ENSG00000150867.14	ENST00000376573.9:ENST00000545335.5	protein_coding	protein_coding	protein_coding	protein_coding	12	127	2	1.85698	2.04413	2.23128	0.00502483	0.00449168	0.0619721	0.0612284
chr14	23066813	23066913	5842685	0	-	0.5	(0.476,0.515]	chr14	555598	1	SS5_PROX	SS5_PROX:INTRON	ACIN1	ENSG00000100813.15	ENST00000605057.6:ENST00000557515.5:ENST00000262710.5:ENST00000457657.5:ENST00000357481.6:ENST00000338631.10:ENST00000473758.5:ENST00000397341.7:ENST00000555053.5:ENST00000555566.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	14	141	2	1.82876	2.044075	2.25939	0.00742693	7.40627e-4	0.0745425	0.0248934
chr2	70228897	70228977	1152267	0	-	0.475	(0.44,0.476]	chr2	123090	1	EXON_MRNA	EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	C2orf42:TIA1	ENSG00000115998.8:ENSG00000116001.17	ENST00000470096.1:ENST00000415783.6:ENST00000433529.7:ENST00000282574.8:ENST00000445587.5:ENST00000454815.6:ENST00000416149.6:ENST00000474809.6:ENST00000477044.6:ENST00000361692.4:ENST00000496452.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	17	172	2	1.77612	2.044065	2.31201	0.00750587	2.74055e-4	0.074841	0.0147515
chr6	31747086	31747186	2843558	0	+	0.5	(0.476,0.515]	chr6	267797	3	SS3_PROX	SS3_PROX:INTRON	MSH5:MSH5-SAPCD1	ENSG00000204410.16:ENSG00000255152.8	ENST00000375755.8:ENST00000375750.9:ENST00000650702.1:ENST00000493662.6:ENST00000375703.7:ENST00000375740.7:ENST00000423982.6:ENST00000463144.5:ENST00000450148.5:ENST00000497269.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	120	2	1.74093	2.044065	2.3472	0.0106416	0.00117711	0.0861859	0.031662
chr8	47950621	47950721	3945664	0	-	0.3	(0.28,0.32]	chr8	361951	62	INTRON	INTRON	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7	protein_coding	protein_coding	protein_coding	protein_coding	8	95	2	1.30886	2.044015	2.77917	0.0664119	0.00285651	0.182385	0.0494641
chr18	801329	801429	6940597	0	-	0.35	(0.32,0.35]	chr18	686527	33	INTRON	INTRON	YES1	ENSG00000176105.14	ENST00000584307.5:ENST00000314574.5:ENST00000577611.1:ENST00000581960.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	152	2	1.61942	2.044	2.46858	0.0168104	7.56101e-4	0.10348	0.0251966
chr22	19343495	19343595	7553518	0	-	0.46	(0.44,0.476]	chr22	772184	116	INTRON	INTRON	HIRA	ENSG00000100084.14	ENST00000263208.5:ENST00000340170.8	protein_coding	protein_coding	protein_coding	protein_coding	12	116	2	1.5849	2.043935	2.50297	0.0139378	0.00135188	0.10247	0.0336321
chr10	832755	832853	4541583	0	-	0.408163	(0.378,0.408]	chr10	419243	14	INTRON	INTRON	LARP4B	ENSG00000107929.16	ENST00000688365.1:ENST00000316157.8:ENST00000690516.1:ENST00000689323.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	35	2	1.8252	2.04386	2.26252	0.0619563	0.056222	0.18407	0.174514
chr10	42547356	42547456	4603801	0	-	0.4	(0.378,0.408]	chr10	424114	213	INTRON	INTRON	ZNF37BP	ENSG00000234420.8	ENST00000452075.7:ENST00000692055.1:ENST00000689225.1:ENST00000686311.1:ENST00000686673.1:ENST00000688789.1:ENST00000690905.1:ENST00000435805.7:ENST00000687308.1:ENST00000692559.1:ENST00000690442.1:ENST00000473592.1:ENST00000691808.1:ENST00000692594.1:ENST00000691366.1:ENST00000689409.1:ENST00000685241.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	3	35	2	1.8252	2.04386	2.26252	0.0619563	0.056222	0.18407	0.174514
chr18	8618643	8618743	6868312	0	+	0.5	(0.476,0.515]	chr18	680454	83	INTRON	INTRON	RAB12	ENSG00000206418.5	ENST00000649141.2	protein_coding	protein_coding	protein_coding	protein_coding	7	67	2	1.38864	2.04375	2.69886	0.0547008	0.00385209	0.182743	0.0542786
chr6	170543000	170543100	3267573	0	-	0.41	(0.408,0.44]	chr6	303367	53	INTRON	INTRON	PSMB1	ENSG00000008018.9	ENST00000262193.7:ENST00000462957.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	53	2	1.58763	2.04373	2.49983	0.0639217	0.00713527	0.177824	0.0756118
chr4	8396636	8396736	2103044	0	-	0.41	(0.408,0.44]	chr4	208282	3	SS5_PROX	SS5_PROX:INTRON	ACOX3	ENSG00000087008.16	ENST00000356406.10:ENST00000413009.6:ENST00000503233.5:ENST00000510365.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	53	2	1.64062	2.04368	2.44674	0.0557275	0.00868283	0.165463	0.0842798
chr22	21583866	21583966	7481866	0	+	0.45	(0.44,0.476]	chr22	763232	151	INTRON	INTRON	UBE2L3	ENSG00000185651.16	ENST00000458578.6:ENST00000545681.2:ENST00000696046.1:ENST00000342192.9:ENST00000496722.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	21	191	2	1.66711	2.0436300000000003	2.42015	0.00348016	6.80634e-4	0.0541104	0.0238882
chr16	88897177	88897277	6540492	0	-	0.58	(0.57,1]	chr16	634078	43	INTRON	INTRON	CBFA2T3	ENSG00000129993.15	ENST00000268679.9:ENST00000327483.9:ENST00000569464.5:ENST00000569443.5:ENST00000562719.5:ENST00000563640.1	protein_coding	protein_coding	protein_coding	protein_coding	5	29	2	1.91937	2.04358	2.16779	0.0468438	0.00900694	0.167716	0.0803518
chr22	47810978	47811077	7541168	0	+	0.646465	(0.57,1]	chr22	770766	118	INTRON	INTRON	ENSG00000224271	ENSG00000224271.7	ENST00000664761.1:ENST00000650683.1:ENST00000651536.1:ENST00000652656.1:ENST00000651445.1:ENST00000423737.5:ENST00000650660.1:ENST00000651056.1:ENST00000652611.1:ENST00000652399.1:ENST00000652123.1:ENST00000652505.1:ENST00000652030.2:ENST00000651403.1:ENST00000652228.1:ENST00000651124.1:ENST00000650972.1:ENST00000651637.1:ENST00000651003.1:ENST00000651948.2:ENST00000651293.1:ENST00000651939.1:ENST00000650787.1:ENST00000651517.1:ENST00000651662.1:ENST00000651638.1:ENST00000670853.1:ENST00000652080.1:ENST00000651294.1:ENST00000652164.1:ENST00000651538.1:ENST00000651033.1:ENST00000651584.1	lncRNA	lncRNA	lncRNA	lncRNA	5	29	2	1.91937	2.04358	2.16779	0.0468438	0.00900694	0.167716	0.0803518
chr2	71367585	71367683	807378	0	+	0.479592	(0.476,0.515]	chr2	90181	15	INTRON	INTRON	ZNF638	ENSG00000075292.19	ENST00000410075.5:ENST00000409544.5:ENST00000264447.9:ENST00000601581.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	39	2	1.68092	2.0435	2.40608	0.0474026	0.0425709	0.169265	0.148082
chr7	158826642	158826742	3689785	0	-	0.48	(0.476,0.515]	chr7	342421	272	INTRON	INTRON	ESYT2	ENSG00000117868.18	ENST00000251527.10:ENST00000275418.13:ENST00000652148.1:ENST00000483958.5:ENST00000497111.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	39	2	1.68092	2.0435	2.40608	0.0474026	0.0425709	0.169265	0.148082
chr12	57056331	57056430	5336615	0	-	0.272727	[0,0.28]	chr12	510334	8	UTR3	UTR3:EXON_MRNA	NEMP1	ENSG00000166881.10	ENST00000300128.9:ENST00000379391.7	protein_coding	protein_coding	protein_coding	protein_coding	5	77	2	2.02265	2.043455	2.06426	0.0449017	0.0168952	0.149888	0.110899
chr12	53457290	53457389	5142941	0	+	0.434343	(0.408,0.44]	chr12	485394	9	INTRON	INTRON	PCBP2	ENSG00000197111.16	ENST00000546463.6:ENST00000437231.5:ENST00000447282.5:ENST00000359282.9:ENST00000549863.5:ENST00000359462.9:ENST00000550520.6:ENST00000552296.6:ENST00000551104.5:ENST00000552819.5:ENST00000455667.7:ENST00000439930.7:ENST00000548933.5:ENST00000546652.6:ENST00000562264.5:ENST00000548190.1:ENST00000550585.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	21	215	2	1.89386	2.043275	2.19269	0.00183037	6.93714e-4	0.0396901	0.0241898
chr3	196051055	196051153	1897216	0	-	0.346939	(0.32,0.35]	chr3	189885	19	UTR3	UTR3:EXON_MRNA:INTRON	TFRC	ENSG00000072274.13	ENST00000426789.5:ENST00000420415.5:ENST00000360110.9:ENST00000392396.7	protein_coding	protein_coding	protein_coding	protein_coding	30	324	2	1.57834	2.0432200000000003	2.5081	0.00425626	2.55258e-4	0.0596127	0.0148225
chr1	215587085	215587185	314383	0	+	0.38	(0.378,0.408]	chr1	36238	4	SS5_PROX	SS5_PROX:INTRON	KCTD3	ENSG00000136636.13	ENST00000259154.9	protein_coding	protein_coding	protein_coding	protein_coding	8	84	2	1.55037	2.043195	2.53602	0.0365151	0.0020933	0.138959	0.0424943
chr8	26325927	26326026	3716441	0	+	0.484848	(0.476,0.515]	chr8	345376	1	INTRON	INTRON	PPP2R2A	ENSG00000221914.11	ENST00000380737.8:ENST00000520329.5:ENST00000518254.5:ENST00000524169.5:ENST00000518397.5:ENST00000522535.5:ENST00000665949.1:ENST00000522150.5:ENST00000523473.5:ENST00000521095.5:ENST00000660435.1:ENST00000523925.5:ENST00000524099.5:ENST00000315985.7:ENST00000519636.5:ENST00000522482.5:ENST00000521557.5:ENST00000519439.5:ENST00000521484.5:ENST00000523964.5:ENST00000667651.1:ENST00000657943.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	112	2	1.59633	2.04315	2.48997	0.0233044	5.57267e-4	0.118272	0.021494
chr17	82461509	82461608	6692292	0	+	0.626263	(0.57,1]	chr17	654554	6	INTRON	INTRON	NARF	ENSG00000141562.19	ENST00000579198.5:ENST00000390006.8:ENST00000583181.5:ENST00000584192.5:ENST00000580296.5:ENST00000345415.11:ENST00000581202.5:ENST00000374611.9:ENST00000457415.7:ENST00000581795.5:ENST00000584411.5:ENST00000577812.5:ENST00000581743.5:ENST00000577432.5:ENST00000582907.5:ENST00000309794.16:ENST00000578082.5:ENST00000580748.1:ENST00000577410.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	46	229	2	1.63069	2.043065	2.45544	0.00109516	2.69003e-6	0.0304174	0.00105261
chr6	167897804	167897904	3035057	0	+	0.5	(0.476,0.515]	chr6	282768	2	SS3_PROX	SS3_PROX:INTRON	AFDN	ENSG00000130396.21	ENST00000683244.1:ENST00000351017.9:ENST00000344191.8:ENST00000392112.5:ENST00000392108.7:ENST00000400822.7:ENST00000447894.6:ENST00000366809.6:ENST00000366806.6:ENST00000423229.1:ENST00000503021.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	72	2	1.67283	2.043055	2.41328	0.0332283	0.00355364	0.134145	0.0547657
chr11	86047684	86047784	5014629	0	-	0.31	(0.28,0.32]	chr11	473022	157	INTRON	INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000630913.2:ENST00000528398.5:ENST00000356360.9:ENST00000534412.5:ENST00000531558.1:ENST00000531930.5:ENST00000532041.5:ENST00000525162.5:ENST00000528256.1:ENST00000528411.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	115	2	2.03106	2.043015	2.05497	0.0208123	0.00387201	0.111549	0.0565824
chr16	21434550	21434650	6460660	0	-	0.49	(0.476,0.515]	chr16	623222	31	INTRON	INTRON	NPIPB3	ENSG00000169246.16	ENST00000521589.5:ENST00000545358.5:ENST00000543368.1:ENST00000544154.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	16	159	2	2.04013	2.043015	2.0459	0.00285079	0.00130335	0.0474835	0.0333932
chr18	12969262	12969361	6876373	0	+	0.494949	(0.476,0.515]	chr18	681295	44	INTRON	INTRON	SEH1L	ENSG00000085415.16	ENST00000262124.15:ENST00000399892.7:ENST00000585730.5:ENST00000589446.5:ENST00000587761.1:ENST00000588251.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	72	2	1.75142	2.0430099999999998	2.3346	0.0259024	0.00494807	0.121522	0.0646039
chr4	78879969	78880067	1982442	0	+	0.285714	(0.28,0.32]	chr4	198552	1	INTRON	INTRON	BMP2K	ENSG00000138756.19	ENST00000502613.3	protein_coding	protein_coding	protein_coding	protein_coding	5	67	2	1.98806	2.043	2.09794	0.0340483	0.0199553	0.134863	0.120668
chr8	141421671	141421766	3878680	0	+	0.610526	(0.57,1]	chr8	356216	4	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PTP4A3	ENSG00000184489.13	ENST00000520105.5:ENST00000521578.6:ENST00000523147.5:ENST00000329397.6:ENST00000349124.3:ENST00000680615.1:ENST00000681443.1	protein_coding	protein_coding	protein_coding	protein_coding	7	38	2	1.55956	2.042945	2.52633	0.0448639	0.0018535	0.149888	0.039946
chr1	32677052	32677152	66103	0	+	0.46	(0.44,0.476]	chr1	8465	31	INTRON	INTRON	RBBP4	ENSG00000162521.19	ENST00000414241.7:ENST00000373493.10:ENST00000492348.6:ENST00000373485.5:ENST00000458695.6:ENST00000463378.5:ENST00000460669.5:ENST00000482190.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	53	2	1.81283	2.042935	2.27304	0.0343005	0.0158915	0.135641	0.109464
chr17	48938278	48938375	6791712	0	-	0.515464	(0.515,0.57]	chr17	670108	6	INTRON	INTRON	SNF8	ENSG00000159210.10	ENST00000502492.6:ENST00000510558.6:ENST00000509995.5:ENST00000290330.7:ENST00000573795.5:ENST00000576353.5:ENST00000514929.1:ENST00000507302.6:ENST00000512243.5:ENST00000515174.5:ENST00000510195.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	45	2	1.33814	2.04293	2.74772	0.063703	0.0142192	0.177689	0.103638
chr17	36521650	36521749	6759515	0	-	0.353535	(0.35,0.378]	chr17	664564	53	INTRON	INTRON	MYO19	ENSG00000278259.5	ENST00000614623.5:ENST00000610992.4:ENST00000621550.4:ENST00000610930.4:ENST00000621344.4:ENST00000620640.4:ENST00000616159.4:ENST00000622055.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	48	2	2.04224	2.04291	2.04358	0.0363073	0.0329533	0.145171	0.138959
chr6	13694186	13694286	3059049	0	-	0.35	(0.32,0.35]	chr6	284542	350	INTRON	INTRON	RANBP9	ENSG00000010017.13	ENST00000011619.6	protein_coding	protein_coding	protein_coding	protein_coding	4	51	2	1.88909	2.042885	2.19668	0.0553737	0.021398	0.165463	0.123719
chr2	235501643	235501743	1041411	0	+	0.41	(0.408,0.44]	chr2	111217	64	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	97	2	1.36246	2.042845	2.72323	0.0386802	0.00114246	0.159946	0.0307966
chr9	98836125	98836211	4173940	0	+	0.44186	(0.44,0.476]	chr9	380379	4	INTRON	INTRON	GALNT12	ENSG00000119514.7	ENST00000375011.4	protein_coding	protein_coding	protein_coding	protein_coding	9	92	2	1.99228	2.042805	2.09333	0.00776307	0.00615695	0.0757646	0.0711648
chr3	185789473	185789573	1885993	0	-	0.48	(0.476,0.515]	chr3	188573	908	INTRON	INTRON	IGF2BP2	ENSG00000073792.16	ENST00000382199.7:ENST00000346192.7:ENST00000457616.6:ENST00000421047.3:ENST00000461957.5:ENST00000493302.5:ENST00000466476.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	73	2	1.73688	2.042775	2.34867	0.0252731	0.00539703	0.133676	0.0644048
chr17	64482618	64482718	6815624	0	-	0.28	[0,0.28]	chr17	673733	3	SS5_PROX	SS5_PROX:INTRON	POLG2	ENSG00000256525.8	ENST00000539111.7:ENST00000581355.1:ENST00000671755.1:ENST00000673460.1:ENST00000585104.2:ENST00000582501.5:ENST00000577506.5:ENST00000580490.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	78	2	1.79667	2.04276	2.28885	0.0445299	0.0181093	0.149888	0.114853
chr16	98601	98701	6425355	0	-	0.54	(0.515,0.57]	chr16	617333	3	SS3_PROX	SS3_PROX:INTRON	NPRL3	ENSG00000103148.17	ENST00000611875.5:ENST00000622194.4:ENST00000621703.4:ENST00000399953.7:ENST00000473674.5:ENST00000457916.5:ENST00000483663.5:ENST00000422814.5:ENST00000468260.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	69	2	1.72014	2.0427400000000002	2.36534	0.0185015	0.00404547	0.108861	0.0578376
chr21	34076137	34076236	7401118	0	+	0.474747	(0.44,0.476]	chr21	753967	20	INTRON	INTRON	MRPS6:SLC5A3	ENSG00000243927.6:ENSG00000198743.7	ENST00000488492.5:ENST00000477091.5:ENST00000399312.3:ENST00000381151.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	67	2	1.74644	2.042715	2.33899	0.0165016	0.0142027	0.110334	0.0959987
chr6	140360108	140360208	2970057	0	+	0.49	(0.476,0.515]	chr6	279019	446	INTRON	INTRON	ENSG00000288714	ENSG00000288714.1	ENST00000684511.1	lncRNA	lncRNA	lncRNA	lncRNA	9	88	2	1.5222	2.042555	2.56291	0.0276881	0.00222582	0.137011	0.0421176
chr22	21980028	21980126	7562000	0	-	0.428571	(0.408,0.44]	chr22	773552	35	INTRON	INTRON	TOP3B	ENSG00000100038.20	ENST00000357179.10:ENST00000457179.5:ENST00000444502.5:ENST00000398793.6:ENST00000424393.5:ENST00000437929.5:ENST00000430142.5:ENST00000456075.5:ENST00000449704.5:ENST00000437103.1:ENST00000434517.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	76	2	1.4846	2.04254	2.60048	0.034616	0.00484324	0.136674	0.0640618
chr3	9425039	9425130	1359164	0	+	0.296703	(0.28,0.32]	chr3	142677	1	INTRON	INTRON	SETD5	ENSG00000168137.20	ENST00000402198.7:ENST00000431285.5:ENST00000683012.1:ENST00000463180.5:ENST00000478475.5:ENST00000415650.5:ENST00000682536.1:ENST00000663774.1:ENST00000665872.1:ENST00000666307.1:ENST00000693430.1:ENST00000691925.1:ENST00000684606.1:ENST00000691175.1:ENST00000688835.1:ENST00000683262.1:ENST00000443339.5:ENST00000406341.5:ENST00000670063.1:ENST00000468208.2:ENST00000691299.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	68	2	1.86684	2.04241	2.21798	0.0605813	0.00901091	0.171122	0.0851009
chr4	78782612	78782712	1981447	0	+	0.31	(0.28,0.32]	chr4	198463	55	INTRON	INTRON	BMP2K	ENSG00000138756.19	ENST00000389010.7:ENST00000502613.3:ENST00000502871.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	68	2	1.86684	2.04241	2.21798	0.0605813	0.00901091	0.171122	0.0851009
chr12	124862079	124862179	5446567	0	-	0.53	(0.515,0.57]	chr12	521286	3	SS5_PROX	SS5_PROX:INTRON	SCARB1	ENSG00000073060.17	ENST00000339570.9:ENST00000261693.11:ENST00000679605.1:ENST00000681686.1:ENST00000680926.1:ENST00000680556.1:ENST00000680982.1:ENST00000680596.1:ENST00000415380.6:ENST00000681117.1:ENST00000538291.5:ENST00000546215.5:ENST00000535005.5:ENST00000539320.3:ENST00000545493.1:ENST00000541661.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	55	2	1.88259	2.04236	2.20213	0.0251849	0.00853365	0.133519	0.0780043
chr12	116131908	116132008	5424088	0	-	0.57	(0.515,0.57]	chr12	518263	200	INTRON	INTRON	MED13L	ENSG00000123066.9	ENST00000281928.9:ENST00000650226.1:ENST00000548743.2:ENST00000647567.1:ENST00000551197.2	protein_coding	protein_coding	protein_coding	protein_coding	12	105	2	1.67927	2.04231	2.40535	0.0157733	4.25661e-4	0.101453	0.0184548
chr19	28518719	28518819	7166282	0	-	0.47	(0.44,0.476]	chr19	724189	505	INTRON	INTRON	ENSG00000283403:ENSG00000267243	ENSG00000283403.1:ENSG00000267243.6	ENST00000592347.5:ENST00000593065.5	lncRNA	lncRNA	lncRNA	lncRNA	10	95	2	1.20235	2.042305	2.88226	0.068424	3.71378e-4	0.184298	0.0173619
chr15	82362168	82362268	6075602	0	+	0.42	(0.408,0.44]	chr15	578727	64	INTRON	INTRON	UBE2Q2P2	ENSG00000259429.5	ENST00000618775.4	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	9	79	2	1.39837	2.042295	2.68622	0.0342165	0.00418848	0.146942	0.0572071
chr3	185787675	185787775	1885975	0	-	0.47	(0.44,0.476]	chr3	188573	890	INTRON	INTRON	IGF2BP2	ENSG00000073792.16	ENST00000382199.7:ENST00000346192.7:ENST00000457616.6:ENST00000421047.3:ENST00000461957.5:ENST00000493302.5:ENST00000466476.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	92	2	1.69823	2.042285	2.38634	0.0218548	0.0018045	0.11491	0.039301
chr1	171577937	171578037	254167	0	+	0.41	(0.408,0.44]	chr1	30237	3	SS5_PROX	SS5_PROX:INTRON	PRRC2C	ENSG00000117523.18	ENST00000647382.2:ENST00000367742.7:ENST00000338920.8:ENST00000426496.6:ENST00000495585.1:ENST00000644916.1	protein_coding	protein_coding	protein_coding	protein_coding	4	43	2	1.78881	2.042255	2.2957	0.0516458	0.0370259	0.176696	0.139194
chr7	74755537	74755635	3336276	0	+	0.387755	(0.378,0.408]	chr7	310531	1	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	GTF2I	ENSG00000263001.8	ENST00000650807.1:ENST00000690345.1:ENST00000573035.6:ENST00000614986.4:ENST00000620879.4:ENST00000621734.4:ENST00000464471.1:ENST00000621040.4:ENST00000614048.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	107	2	1.97577	2.042065	2.10836	0.00823929	0.00375851	0.0773252	0.0562562
chr1	245839803	245839903	674020	0	-	0.29	(0.28,0.32]	chr1	79669	250	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000366517.5:ENST00000366516.5:ENST00000490107.6:ENST00000470510.5:ENST00000483072.5:ENST00000493441.5:ENST00000488153.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	68	2	1.71442	2.0420249999999998	2.36963	0.0454351	0.0157022	0.164236	0.101453
chr22	20953064	20953161	7480876	0	+	0.28866000000000003	(0.28,0.32]	chr22	763101	34	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	CRKL	ENSG00000099942.13	ENST00000354336.8:ENST00000411769.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	33	419	2	2.02418	2.0420249999999998	2.05987	0.00144363	5.33318e-4	0.0342522	0.0208645
chr20	35732422	35732518	7336453	0	-	0.614583	(0.57,1]	chr20	747475	4	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	RBM39	ENSG00000131051.24	ENST00000253363.11:ENST00000639702.1:ENST00000656873.1:ENST00000463004.5:ENST00000361162.10:ENST00000461283.5:ENST00000403542.6:ENST00000338163.10:ENST00000528062.7:ENST00000429968.5:ENST00000444878.5:ENST00000665058.1:ENST00000492779.5:ENST00000374038.7:ENST00000412738.5:ENST00000434927.5:ENST00000425184.5:ENST00000481037.5:ENST00000455343.5:ENST00000416108.5:ENST00000426951.5:ENST00000477334.1:ENST00000442447.5:ENST00000449489.5:ENST00000433027.5:ENST00000487604.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	46	2	1.42137	2.04193	2.66249	0.0395751	9.0016e-4	0.161534	0.0277303
chr12	53456994	53457093	5142938	0	+	0.282828	(0.28,0.32]	chr12	485394	6	INTRON	INTRON	PCBP2	ENSG00000197111.16	ENST00000546463.6:ENST00000437231.5:ENST00000447282.5:ENST00000359282.9:ENST00000549863.5:ENST00000359462.9:ENST00000550520.6:ENST00000552296.6:ENST00000551104.5:ENST00000552819.5:ENST00000455667.7:ENST00000439930.7:ENST00000548933.5:ENST00000546652.6:ENST00000562264.5:ENST00000548190.1:ENST00000550585.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	26	313	2	1.45661	2.0418849999999997	2.62716	0.0147936	1.00562e-4	0.0985936	0.00847812
chr19	1438892	1438981	6995401	0	+	0.820225	(0.57,1]	chr19	693237	1	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	RPS15	ENSG00000115268.10	ENST00000233609.8:ENST00000586686.6:ENST00000592588.7:ENST00000591032.1:ENST00000592623.5:ENST00000589656.6:ENST00000586656.5:ENST00000591804.6:ENST00000593052.5:ENST00000592700.2:ENST00000586096.3:ENST00000585665.2:ENST00000617694.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	25	2	1.55956	2.041805	2.52405	0.0448639	0.0263139	0.149888	0.133676
chr6	17622269	17622368	3065346	0	-	0.525253	(0.515,0.57]	chr6	284764	52	INTRON	INTRON	NUP153	ENSG00000124789.12	ENST00000613258.4:ENST00000537253.5:ENST00000262077.3	protein_coding	protein_coding	protein_coding	protein_coding	5	46	2	1.97035	2.04174	2.11313	0.0256725	0.0195832	0.133676	0.109483
chr9	136458833	136458933	4374779	0	-	0.44	(0.408,0.44]	chr9	403018	3	SS5_PROX	SS5_PROX:INTRON	SEC16A	ENSG00000148396.19	ENST00000290037.10:ENST00000313050.11:ENST00000371706.8:ENST00000453963.5:ENST00000277537.10:ENST00000684901.1:ENST00000690691.1:ENST00000431893.3	protein_coding	protein_coding	protein_coding	protein_coding	6	61	2	1.55035	2.04174	2.53313	0.0455214	0.00739595	0.164236	0.074277
chr7	105323766	105323866	3603254	0	-	0.4	(0.378,0.408]	chr7	336161	168	INTRON	INTRON	SRPK2	ENSG00000135250.17	ENST00000393651.8:ENST00000482897.5:ENST00000460391.5:ENST00000462282.5:ENST00000465112.5:ENST00000482862.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	46	2	1.97143	2.041685	2.11194	0.0398704	0.0292534	0.161534	0.128055
chr5	131687649	131687749	2719640	0	-	0.38	(0.378,0.408]	chr5	255672	81	INTRON	INTRON	FNIP1	ENSG00000217128.13	ENST00000510461.6:ENST00000307954.12:ENST00000307968.11:ENST00000511848.1	protein_coding	protein_coding	protein_coding	protein_coding	6	66	2	1.73164	2.0416600000000003	2.35168	0.0441773	0.0046563	0.149888	0.0629753
chr1	100097583	100097682	515500	0	-	0.454545	(0.44,0.476]	chr1	60434	90	INTRON	INTRON	SASS6	ENSG00000156876.10	ENST00000462159.1:ENST00000287482.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	60	2	1.84134	2.041615	2.24189	0.0193405	0.0175428	0.11319	0.108861
chr18	36151063	36151162	6891647	0	+	0.444444	(0.44,0.476]	chr18	683023	43	INTRON	INTRON	ELP2	ENSG00000134759.14	ENST00000351393.10:ENST00000442325.6:ENST00000358232.11:ENST00000423854.6:ENST00000539560.5:ENST00000350494.10:ENST00000542824.5:ENST00000540799.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	60	2	1.84134	2.041615	2.24189	0.0193405	0.0175428	0.11319	0.108861
chr2	197933276	197933376	970389	0	+	0.58	(0.57,1]	chr2	104858	1226	INTRON	INTRON	PLCL1	ENSG00000115896.16	ENST00000428675.6:ENST00000435320.1:ENST00000487695.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	43	2	1.95484	2.041525	2.12821	0.0113205	0.00521663	0.0948452	0.0633615
chr1	23041409	23041509	43978	0	+	0.37	(0.35,0.378]	chr1	5258	104	INTRON	INTRON	KDM1A	ENSG00000004487.18	ENST00000692214.1:ENST00000686934.1:ENST00000689853.1:ENST00000465864.2:ENST00000691256.1:ENST00000688122.1:ENST00000692056.1:ENST00000692853.1:ENST00000689366.1:ENST00000686270.1:ENST00000685102.1:ENST00000690627.1:ENST00000686771.1:ENST00000692209.1:ENST00000686339.1:ENST00000691813.1:ENST00000693156.1:ENST00000688235.1:ENST00000692975.1:ENST00000687202.1:ENST00000691682.1:ENST00000691404.1:ENST00000691694.1:ENST00000688680.1:ENST00000356634.7:ENST00000400181.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	134	2	1.82648	2.0414250000000003	2.25637	0.0150408	8.28597e-4	0.0994339	0.0263691
chr20	17968044	17968144	7320565	0	-	0.56	(0.515,0.57]	chr20	745339	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS5_PROX:INTRON	SNX5	ENSG00000089006.17	ENST00000377768.7:ENST00000490175.5:ENST00000377759.9:ENST00000431277.5:ENST00000419004.2:ENST00000474883.5:ENST00000469704.1:ENST00000606602.1:ENST00000606557.1:ENST00000481323.1:ENST00000486039.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	69	2	1.64415	2.041375	2.4386	0.0231656	0.00326739	0.127036	0.0508595
chr17	44094134	44094234	6778618	0	-	0.46	(0.44,0.476]	chr17	668244	3	SS3_PROX	SS3_PROX:INTRON	HDAC5	ENSG00000108840.16	ENST00000225983.10:ENST00000682912.1:ENST00000336057.9:ENST00000586802.5:ENST00000588703.5:ENST00000587135.1:ENST00000591714.5	protein_coding	protein_coding	protein_coding	protein_coding	4	40	2	1.87325	2.04137	2.20949	0.0672585	0.0265709	0.183051	0.134088
chr5	159176788	159176867	2758858	0	-	0.443038	(0.44,0.476]	chr5	260347	3	CDS	CDS:EXON_MRNA	RNF145	ENSG00000145860.12	ENST00000424310.7:ENST00000519865.5:ENST00000274542.6:ENST00000611185.4:ENST00000521606.6:ENST00000518802.5:ENST00000520638.1	protein_coding	protein_coding	protein_coding	protein_coding	4	40	2	1.87325	2.04137	2.20949	0.0672585	0.0265709	0.183051	0.134088
chrX	111710313	111710408	7702312	0	+	0.4	(0.378,0.408]	chrX	788233	9	INTRON	INTRON	ALG13	ENSG00000101901.12	ENST00000487141.5:ENST00000394780.8:ENST00000251943.8:ENST00000610588.4:ENST00000621367.4:ENST00000622997.3:ENST00000624161.3:ENST00000636363.1:ENST00000624881.3:ENST00000495283.5:ENST00000623144.3:ENST00000470971.5:ENST00000623148.3:ENST00000436609.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	63	2	1.5653	2.041315	2.51733	0.043739	0.00808319	0.162255	0.0766625
chr17	81628529	81628628	6849524	0	-	0.40404	(0.378,0.408]	chr17	678237	59	INTRON	INTRON	NPLOC4	ENSG00000182446.14	ENST00000331134.11:ENST00000374747.9:ENST00000574897.5:ENST00000625705.1:ENST00000570300.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	42	2	1.94559	2.04131	2.13703	0.0797592	0.0211434	0.19979	0.122929
chr8	105456758	105456858	3838629	0	+	0.53	(0.515,0.57]	chr8	354063	51	INTRON	INTRON	ZFPM2	ENSG00000169946.14	ENST00000407775.7:ENST00000520492.5:ENST00000520027.5:ENST00000524235.5:ENST00000511341.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	86	2	1.40962	2.04128	2.67294	0.0264099	0.00112534	0.133676	0.0306963
chr5	151810009	151810109	2522213	0	+	0.45	(0.44,0.476]	chr5	241380	46	UTR3	UTR3:EXON_MRNA:INTRON	G3BP1	ENSG00000145907.16	ENST00000678964.1:ENST00000678925.1:ENST00000394123.7:ENST00000676978.1:ENST00000679289.1:ENST00000677493.1:ENST00000676644.1:ENST00000677757.1:ENST00000356245.8:ENST00000678646.1:ENST00000677381.1:ENST00000678904.1:ENST00000677923.1:ENST00000677323.1:ENST00000676715.1:ENST00000676734.1:ENST00000676878.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	67	2	1.30125	2.04127	2.78129	0.0734119	0.00229634	0.190171	0.0439319
chr6	143172678	143172778	2976306	0	+	0.36	(0.35,0.378]	chr6	279149	71	INTRON	INTRON	AIG1	ENSG00000146416.19	ENST00000367601.8:ENST00000447498.5:ENST00000646199.1:ENST00000357847.9:ENST00000629020.2:ENST00000275235.8:ENST00000494282.6:ENST00000458219.1:ENST00000470265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	44	2	1.5118	2.041145	2.57049	0.0789277	0.0262669	0.198963	0.133676
chr9	34037783	34037882	4245740	0	-	0.363636	(0.35,0.378]	chr9	390499	45	INTRON	INTRON	UBAP2	ENSG00000137073.24	ENST00000379238.7:ENST00000683659.1:ENST00000682239.1:ENST00000683140.1:ENST00000682209.1:ENST00000681980.1:ENST00000360802.6:ENST00000683252.1:ENST00000684158.1:ENST00000682914.1:ENST00000683717.1:ENST00000379239.9:ENST00000683084.1:ENST00000684754.1:ENST00000629575.2:ENST00000684298.1:ENST00000480885.5:ENST00000459988.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	44	2	1.5118	2.041145	2.57049	0.0789277	0.0262669	0.198963	0.133676
chr15	55288349	55288449	6180892	0	-	0.42	(0.408,0.44]	chr15	589167	176	INTRON	INTRON	RAB27A	ENSG00000069974.16	ENST00000336787.6:ENST00000563262.5:ENST00000567639.1:ENST00000565776.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	44	2	1.74775	2.04103	2.33431	0.0735403	0.0129219	0.190238	0.0990564
chr6	136635031	136635131	3234052	0	-	0.44	(0.408,0.44]	chr6	300622	117	INTRON	INTRON	MAP3K5	ENSG00000197442.10	ENST00000359015.5	protein_coding	protein_coding	protein_coding	protein_coding	4	44	2	1.74775	2.04103	2.33431	0.0735403	0.0129219	0.190238	0.0990564
chr18	9110760	9110859	6868674	0	+	0.40404	(0.378,0.408]	chr18	680510	54	INTRON	INTRON	NDUFV2	ENSG00000178127.13	ENST00000577703.1:ENST00000318388.11:ENST00000583375.5:ENST00000400033.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	21	165	2	1.46611	2.041005	2.6159	0.00760769	0.00194844	0.0775618	0.0400465
chr20	49705178	49705278	7353541	0	-	0.44	(0.408,0.44]	chr20	749846	481	INTRON	INTRON	B4GALT5	ENSG00000158470.5	ENST00000371711.4	protein_coding	protein_coding	protein_coding	protein_coding	5	54	2	1.81572	2.040945	2.26617	0.0626779	0.00649402	0.175915	0.0734343
chr3	185917516	185917615	1886384	0	-	0.373737	(0.35,0.378]	chr3	188595	31	UTR3	UTR3:EXON_MRNA	TRA2B	ENSG00000136527.19	ENST00000453386.7:ENST00000492417.5:ENST00000463328.5:ENST00000259043.11:ENST00000414862.5:ENST00000487615.5:ENST00000466832.5:ENST00000456380.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	19	208	2	1.82869	2.0409100000000002	2.25313	0.00282938	9.9587e-4	0.0491613	0.0288906
chr6	26285033	26285110	3071138	0	-	0.402597	(0.378,0.408]	chr6	285474	1	UTR3	UTR3:EXON_MRNA	H4C8	ENSG00000158406.6	ENST00000634956.1:ENST00000634560.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	9	92	2	1.57136	2.040895	2.51043	0.0233757	0.00304007	0.128037	0.0493883
chr19	8482252	8482351	7011151	0	+	0.494949	(0.476,0.515]	chr19	696201	3	INTRON	INTRON	HNRNPM	ENSG00000099783.12	ENST00000348943.7:ENST00000600092.5:ENST00000325495.9:ENST00000600806.5:ENST00000620401.4:ENST00000594907.5:ENST00000597270.1:ENST00000597081.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	73	2	1.4553	2.040875	2.62645	0.0623645	0.00135678	0.175357	0.0339121
chr6	166949322	166949421	3264247	0	-	0.484848	(0.476,0.515]	chr6	303038	3	INTRON	INTRON	ENSG00000249141:RNASET2	ENSG00000249141.1:ENSG00000026297.17	ENST00000507747.1:ENST00000508775.6:ENST00000683770.1:ENST00000611959.2:ENST00000620173.5:ENST00000682774.1:ENST00000684236.1:ENST00000683968.1:ENST00000366855.10:ENST00000421787.5:ENST00000476238.6:ENST00000028008.9:ENST00000478180.6:ENST00000499370.6:ENST00000358165.7:ENST00000496851.6:ENST00000683158.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	100	2	2.02162	2.040865	2.06011	0.00869033	0.00361279	0.0788605	0.055406
chr19	2204556	2204655	6996586	0	+	0.59596	(0.57,1]	chr19	693473	14	INTRON	INTRON	DOT1L	ENSG00000104885.19	ENST00000398665.8:ENST00000686010.1	protein_coding	protein_coding	protein_coding	protein_coding	6	33	2	1.98953	2.0408	2.09207	0.0182848	0.0121228	0.115629	0.090965
chrX	77901867	77901967	7684967	0	+	0.44	(0.408,0.44]	chrX	786811	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	COX7B	ENSG00000131174.7	ENST00000373335.4:ENST00000475465.1:ENST00000650309.2:ENST00000647835.1	protein_coding	protein_coding	protein_coding	protein_coding	8	61	2	1.36246	2.040785	2.71911	0.0386802	0.0189489	0.159946	0.108861
chr2	96633553	96633648	1181150	0	-	0.536842	(0.515,0.57]	chr2	126519	17	INTRON	INTRON	KANSL3	ENSG00000114982.19	ENST00000354204.10:ENST00000431828.6:ENST00000487070.5:ENST00000420155.5:ENST00000670907.1:ENST00000666923.1:ENST00000597150.5:ENST00000444759.5:ENST00000452268.5:ENST00000425656.5:ENST00000448075.1:ENST00000451819.5:ENST00000416138.1:ENST00000418735.1:ENST00000475820.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	53	2	1.82142	2.04077	2.26012	0.0191173	0.0160033	0.109464	0.108861
chr14	60758150	60758250	5736955	0	+	0.35	(0.32,0.35]	chr14	544884	43	INTRON	INTRON	MNAT1	ENSG00000020426.11	ENST00000261245.9:ENST00000556764.5:ENST00000539616.6:ENST00000553354.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	51	2	1.94202	2.040735	2.13945	0.0486128	0.0254517	0.153946	0.133676
chr16	14976288	14976383	6305147	0	+	0.347368	(0.32,0.35]	chr16	603263	7	INTRON	INTRON	PDXDC1	ENSG00000179889.20	ENST00000563679.5:ENST00000563667.5:ENST00000563522.5:ENST00000535621.6:ENST00000396410.9:ENST00000566426.1:ENST00000455313.6:ENST00000562119.5:ENST00000570001.5:ENST00000569715.5:ENST00000627450.2:ENST00000565362.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	51	2	1.94202	2.040735	2.13945	0.0486128	0.0254517	0.153946	0.133676
chr11	68319494	68319594	4816004	0	+	0.41	(0.408,0.44]	chr11	448753	63	INTRON	INTRON	LRP5	ENSG00000162337.12	ENST00000294304.12:ENST00000529993.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	44	2	2.00228	2.0407349999999997	2.07919	0.0389732	0.0291499	0.143072	0.14147
chr4	73254678	73254778	2160786	0	-	0.5	(0.476,0.515]	chr4	212799	317	INTRON	INTRON	ANKRD17	ENSG00000132466.20	ENST00000358602.9:ENST00000558247.5:ENST00000330838.10:ENST00000561029.1	protein_coding	protein_coding	protein_coding	protein_coding	15	150	2	2.03547	2.040685	2.0459	0.00285079	0.00174696	0.0474835	0.0386026
chr22	19509785	19509885	7477147	0	+	0.44	(0.408,0.44]	chr22	762458	7	INTRON	INTRON	CDC45	ENSG00000093009.11	ENST00000407835.6:ENST00000437685.6:ENST00000438587.6:ENST00000672837.1:ENST00000263201.7:ENST00000404724.7:ENST00000471470.1:ENST00000671972.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	76	2	1.9831	2.0406400000000002	2.09818	0.018491	0.00772939	0.116694	0.0757122
chr4	126713776	126713875	2237848	0	-	0.151515	[0,0.28]	chr4	219029	151	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	7	101	2	1.98218	2.040585	2.09899	0.0371453	0.00868679	0.139304	0.0843099
chr20	57408341	57408440	7288943	0	+	0.676768	(0.57,1]	chr20	741618	6	UTR3	UTR3:EXON_MRNA	RBM38	ENSG00000132819.17	ENST00000356208.10:ENST00000344785.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	43	2	2.00153	2.040545	2.07956	0.013114	0.00529543	0.0998629	0.063668
chr7	152223514	152223614	3679138	0	-	0.51	(0.476,0.515]	chr7	341545	1	SS5_PROX	SS5_PROX:INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000683200.1:ENST00000682283.1:ENST00000473186.5:ENST00000679882.1:ENST00000680969.1:ENST00000681033.1:ENST00000679645.1:ENST00000684550.1:ENST00000489110.2:ENST00000681838.1:ENST00000683490.1:ENST00000684623.1:ENST00000418673.2:ENST00000684140.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	54	2	2.01618	2.040545	2.06491	0.0304733	0.0180082	0.143385	0.106756
chr1	149885216	149885311	549582	0	-	0.389474	(0.378,0.408]	chr1	64526	9	UTR3	UTR3:EXON_MRNA	H2BC21	ENSG00000184678.11	ENST00000369155.4	protein_coding	protein_coding	protein_coding	protein_coding	20	203	2	2.00514	2.04049	2.07584	0.00380656	4.86222e-4	0.0542786	0.0199652
chr20	5567175	5567272	7311890	0	-	0.391753	(0.378,0.408]	chr20	744544	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GPCPD1	ENSG00000125772.14	ENST00000379019.7:ENST00000481038.5:ENST00000418646.5:ENST00000633552.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	52	2	1.41307	2.04046	2.66785	0.0510067	0.0224639	0.176593	0.11692
chr14	30981087	30981187	5857420	0	-	0.45	(0.44,0.476]	chr14	556508	167	INTRON	INTRON	STRN3	ENSG00000196792.12	ENST00000355683.9:ENST00000357479.10:ENST00000555358.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	75	2	1.66462	2.04045	2.41628	0.0520247	0.00156262	0.159508	0.0365263
chr11	71996610	71996709	4824219	0	+	0.575758	(0.57,1]	chr11	449971	4	UTR3	UTR3:EXON_MRNA	RNF121	ENSG00000137522.18	ENST00000393713.7:ENST00000361756.8:ENST00000526549.5:ENST00000530137.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	32	2	1.79978	2.040405	2.28103	0.0199509	0.0151554	0.109608	0.108535
chr22	18563822	18563921	7550990	0	-	0.414141	(0.408,0.44]	chr22	771829	109	INTRON	INTRON	PI4KAP1	ENSG00000274602.5	ENST00000612500.4:ENST00000611748.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	5	54	2	1.6306	2.040315	2.45003	0.0544158	0.00990006	0.182272	0.0838372
chr16	29608118	29608217	6471682	0	-	0.454545	(0.44,0.476]	chr16	625301	133	INTRON	INTRON	ENSG00000288632	ENSG00000288632.1	ENST00000675579.1	lncRNA	lncRNA	lncRNA	lncRNA	7	68	2	1.53117	2.040305	2.54944	0.0377545	0.00591346	0.140863	0.0694038
chr16	21442009	21442109	6460735	0	-	0.5	(0.476,0.515]	chr16	623226	14	INTRON	INTRON	NPIPB3	ENSG00000169246.16	ENST00000545358.5:ENST00000543368.1:ENST00000544154.1	protein_coding	retained_intron	protein_coding	retained_intron:processed_transcript	14	143	2	2.03264	2.040205	2.04777	0.00319642	0.00230597	0.05208	0.0428247
chr3	6598344	6598444	1357227	0	+	0.44	(0.408,0.44]	chr3	142522	139	INTRON	INTRON	ENSG00000189229	ENSG00000189229.12	ENST00000433639.1:ENST00000655754.1:ENST00000658468.1:ENST00000669512.1:ENST00000667028.1:ENST00000655541.1:ENST00000668643.1:ENST00000671568.1:ENST00000671036.1:ENST00000669798.1:ENST00000655753.1:ENST00000655856.1:ENST00000658398.1:ENST00000661518.1:ENST00000661279.1:ENST00000655495.1:ENST00000663041.1:ENST00000659827.1:ENST00000667716.1:ENST00000668416.1:ENST00000658133.1:ENST00000342990.4:ENST00000660054.1:ENST00000671370.1	lncRNA	lncRNA	lncRNA	lncRNA	4	41	2	1.58763	2.040105	2.49258	0.0639217	0.0314608	0.177824	0.144381
chr5	37350608	37350689	2602559	0	-	0.432099	(0.408,0.44]	chr5	247496	4	SS3_PROX	SS3_PROX:INTRON	NUP155	ENSG00000113569.16	ENST00000231498.8:ENST00000381843.6:ENST00000513532.1	protein_coding	protein_coding	protein_coding	protein_coding	4	41	2	1.58763	2.040105	2.49258	0.0639217	0.0314608	0.177824	0.144381
chr5	134912665	134912764	2491789	0	+	0.424242	(0.408,0.44]	chr5	238088	18	INTRON	INTRON	PCBD2	ENSG00000132570.15	ENST00000512783.5:ENST00000254908.11:ENST00000504352.1:ENST00000510013.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	41	2	1.58763	2.040105	2.49258	0.0639217	0.0314608	0.177824	0.144381
chr10	35336219	35336310	4601760	0	-	0.736264	(0.57,1]	chr10	423942	1	EXON_LNCRNA	EXON_LNCRNA	CCNY-AS1	ENSG00000271335.6	ENST00000605499.1	lncRNA	lncRNA	lncRNA	lncRNA	8	42	2	1.43111	2.04007	2.64903	0.0484405	9.85026e-4	0.153635	0.0288488
chr8	90280387	90280487	3792897	0	+	0.27	[0,0.28]	chr8	351786	332	INTRON	INTRON	LINC00534	ENSG00000253394.7	ENST00000662145.1:ENST00000655523.1:ENST00000517400.6:ENST00000658299.1:ENST00000663329.1:ENST00000658342.1:ENST00000523283.6:ENST00000655219.1:ENST00000662692.1:ENST00000667296.1:ENST00000667565.1:ENST00000523406.2:ENST00000659030.1:ENST00000653734.1:ENST00000654785.1:ENST00000524361.5:ENST00000668745.1:ENST00000666641.2:ENST00000661519.1:ENST00000671657.1:ENST00000655123.1:ENST00000663098.1:ENST00000670903.1:ENST00000654946.1	lncRNA	lncRNA	lncRNA	lncRNA	10	149	2	1.46974	2.04006	2.61038	0.0467693	0.00102823	0.151869	0.0294094
chr5	43122177	43122277	2349037	0	+	0.42	(0.408,0.44]	chr5	226654	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ZNF131	ENSG00000172262.12	ENST00000515326.5:ENST00000682664.1:ENST00000510026.5:ENST00000504359.1:ENST00000509156.5:ENST00000508259.5:ENST00000507218.5:ENST00000306938.8:ENST00000505606.6:ENST00000509634.5:ENST00000509341.5:ENST00000511736.5:ENST00000509931.5:ENST00000510037.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	61	2	1.58026	2.040045	2.49983	0.0444624	0.00713527	0.149888	0.0756118
chr11	67395215	67395315	4815041	0	+	0.47	(0.44,0.476]	chr11	448412	1	SS3_PROX	SS3_PROX:INTRON	RAD9A	ENSG00000172613.8	ENST00000543808.5:ENST00000538013.5:ENST00000544620.5:ENST00000542139.1:ENST00000307980.7:ENST00000530934.5:ENST00000529100.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	63	2	1.90381	2.040005	2.1762	0.0260626	0.0092251	0.122153	0.0855292
chr1	22064633	22064731	42323	0	+	0.408163	(0.378,0.408]	chr1	5080	2	INTRON	INTRON	ENSG00000289694:CDC42	ENSG00000289694.1:ENSG00000070831.18	ENST00000695855.1:ENST00000695856.1:ENST00000344548.8:ENST00000400259.5:ENST00000667384.2:ENST00000411827.2:ENST00000695858.1:ENST00000695857.1:ENST00000315554.14:ENST00000695859.1:ENST00000498236.1:ENST00000656825.1:ENST00000651171.1:ENST00000652582.1:ENST00000695860.1:ENST00000695796.1:ENST00000695797.1:ENST00000662562.2:ENST00000695798.1:ENST00000695799.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	113	2	1.5592	2.03997	2.52074	0.0224236	9.57797e-4	0.11692	0.0284518
chr15	41295604	41295704	6004504	0	+	0.47	(0.44,0.476]	chr15	571266	48	INTRON	INTRON	OIP5-AS1	ENSG00000247556.6	ENST00000558945.5:ENST00000500949.6:ENST00000561275.5:ENST00000560706.5:ENST00000501665.2	lncRNA	lncRNA	lncRNA	lncRNA	9	86	2	1.99716	2.039965	2.08277	0.0309998	0.00283912	0.13151	0.049315
chr22	23187114	23187213	7483269	0	+	0.464646	(0.44,0.476]	chr22	763531	45	INTRON	INTRON	BCR	ENSG00000186716.21	ENST00000479188.5:ENST00000359540.7:ENST00000305877.13	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	83	2	1.90372	2.03996	2.1762	0.0103521	0.0092251	0.0855292	0.085045
chr4	55601774	55601874	2150348	0	-	0.46	(0.44,0.476]	chr4	211609	8	INTRON	INTRON	NMU	ENSG00000109255.11	ENST00000511469.5:ENST00000264218.7:ENST00000505262.5:ENST00000507338.1:ENST00000515325.5:ENST00000509371.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	19	188	2	2.00469	2.0399599999999998	2.07523	0.00270804	6.71591e-4	0.0467523	0.0235155
chr7	158642150	158642246	3688132	0	-	0.260417	[0,0.28]	chr7	342113	2	INTRON	INTRON	NCAPG2	ENSG00000146918.20	ENST00000356309.8:ENST00000432615.5:ENST00000409423.5:ENST00000441982.5:ENST00000467785.5:ENST00000409339.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	68	2	1.80873	2.0399599999999998	2.27119	0.070351	0.0234525	0.184298	0.128429
chr1	65282097	65282197	135814	0	+	0.47	(0.44,0.476]	chr1	15346	168	INTRON	INTRON	DNAJC6	ENSG00000116675.16	ENST00000463018.5:ENST00000494710.6:ENST00000263441.11:ENST00000395325.7:ENST00000483402.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	116	2	1.54969	2.03995	2.53021	0.0185226	8.87528e-4	0.108861	0.0271952
chr6	31757092	31757168	2843667	0	+	0.315789	(0.28,0.32]	chr6	267821	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MSH5:MSH5-SAPCD1	ENSG00000204410.16:ENSG00000255152.8	ENST00000375755.8:ENST00000375750.9:ENST00000650702.1:ENST00000493662.6:ENST00000375703.7:ENST00000375740.7:ENST00000423982.6:ENST00000463144.5:ENST00000450148.5:ENST00000468602.5:ENST00000468136.5:ENST00000395853.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	23	296	2	1.62443	2.03995	2.45547	0.00635468	4.4518e-4	0.0723569	0.0194896
chr7	148821566	148821666	3670125	0	-	0.48	(0.476,0.515]	chr7	340580	8	INTRON	INTRON	EZH2	ENSG00000106462.12	ENST00000683292.1:ENST00000320356.7:ENST00000492143.5:ENST00000478654.5:ENST00000350995.6:ENST00000460911.5:ENST00000683744.1:ENST00000682317.1:ENST00000682263.1:ENST00000684300.1:ENST00000476773.5:ENST00000483967.5:ENST00000498186.5:ENST00000483012.1:ENST00000682401.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	111	2	1.83634	2.03993	2.24352	0.00949158	0.0019689	0.0817766	0.0411469
chr17	58000818	58000918	6799985	0	-	0.39	(0.378,0.408]	chr17	671423	61	INTRON	INTRON	ENSG00000266086	ENSG00000266086.3	ENST00000578794.2:ENST00000665125.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	11	113	2	1.98294	2.03991	2.09688	0.00805155	0.00311505	0.0766625	0.0512673
chr1	150647423	150647523	551403	0	-	0.48	(0.476,0.515]	chr1	64809	13	UTR3	UTR3:EXON_MRNA	GOLPH3L	ENSG00000143457.11	ENST00000271732.8	protein_coding	protein_coding	protein_coding	protein_coding	16	140	2	1.32298	2.03984	2.7567	0.0230185	3.76694e-4	0.126415	0.017994
chr17	66362030	66362130	6662892	0	+	0.5	(0.476,0.515]	chr17	650324	221	INTRON	INTRON	PRKCA	ENSG00000154229.12	ENST00000413366.8:ENST00000578063.5:ENST00000284384.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	33	2	1.79693	2.0397849999999997	2.28264	0.0649782	0.0534132	0.179876	0.179417
chr19	16078851	16078943	7025993	0	+	0.478261	(0.476,0.515]	chr19	699182	1	EXON_MRNA	EXON_MRNA:INTRON	TPM4	ENSG00000167460.17	ENST00000646974.2:ENST00000586499.6:ENST00000647464.2:ENST00000668959.1:ENST00000590180.3:ENST00000655004.1:ENST00000642789.1:ENST00000653979.1:ENST00000645471.1:ENST00000659595.1:ENST00000647037.1:ENST00000587201.6:ENST00000643579.2:ENST00000586193.6:ENST00000643494.1:ENST00000670382.1:ENST00000300933.9:ENST00000646575.1:ENST00000586833.7:ENST00000642221.1:ENST00000658224.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	33	2	1.79693	2.0397849999999997	2.28264	0.0649782	0.0534132	0.179876	0.179417
chr9	77253446	77253545	4145702	0	+	0.515152	(0.476,0.515]	chr9	377856	7	INTRON	INTRON	VPS13A	ENSG00000197969.14	ENST00000376636.7:ENST00000360280.8:ENST00000643348.1:ENST00000645632.1	protein_coding	protein_coding	protein_coding	protein_coding	3	33	2	1.79693	2.0397849999999997	2.28264	0.0649782	0.0534132	0.179876	0.179417
chr6	15262754	15262854	2823113	0	+	0.57	(0.515,0.57]	chr6	265190	134	INTRON	INTRON	JARID2	ENSG00000008083.14	ENST00000341776.7:ENST00000397311.4	protein_coding	protein_coding	protein_coding	protein_coding	5	45	2	2.01737	2.039715	2.06206	0.0352218	0.0135396	0.137535	0.101363
chr11	86038200	86038300	5014534	0	-	0.56	(0.515,0.57]	chr11	473022	62	INTRON	INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000630913.2:ENST00000528398.5:ENST00000356360.9:ENST00000534412.5:ENST00000531558.1:ENST00000531930.5:ENST00000532041.5:ENST00000525162.5:ENST00000528256.1:ENST00000528411.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	21	180	2	1.83788	2.03961	2.24134	0.00476626	1.24308e-4	0.0602209	0.00952291
chr11	86063757	86063857	5014790	0	-	0.28	[0,0.28]	chr11	473022	318	INTRON	INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000630913.2:ENST00000528398.5:ENST00000356360.9:ENST00000534412.5:ENST00000531558.1:ENST00000531930.5:ENST00000532041.5:ENST00000525162.5:ENST00000528256.1:ENST00000528411.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	140	2	1.63606	2.0395950000000003	2.44313	0.0468781	0.00124757	0.151917	0.0328543
chr11	78411950	78412050	5000329	0	-	0.52	(0.515,0.57]	chr11	472472	475	INTRON	INTRON	GAB2	ENSG00000033327.13	ENST00000361507.5:ENST00000526030.1:ENST00000528886.5:ENST00000530915.1:ENST00000534823.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	28	2	1.94945	2.03958	2.12971	0.0757903	0.0414068	0.194427	0.161557
chr13	95214670	95214769	5639004	0	-	0.535354	(0.515,0.57]	chr13	537151	35	INTRON	INTRON	ABCC4	ENSG00000125257.16	ENST00000645237.2:ENST00000643051.1:ENST00000643842.1:ENST00000646439.1:ENST00000643816.1:ENST00000536256.3:ENST00000643556.1:ENST00000629385.1:ENST00000642524.1:ENST00000645532.1:ENST00000644471.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	28	2	1.94945	2.03958	2.12971	0.0757903	0.0414068	0.194427	0.161557
chr17	35609486	35609586	6599763	0	+	0.52	(0.515,0.57]	chr17	642258	7	INTRON	INTRON	AP2B1	ENSG00000006125.18	ENST00000616784.4:ENST00000621914.4:ENST00000620039.4:ENST00000616681.4:ENST00000621668.4:ENST00000610402.5:ENST00000612035.4:ENST00000614600.4:ENST00000612116.5:ENST00000618940.4:ENST00000591561.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	28	2	1.94945	2.03958	2.12971	0.0757903	0.0414068	0.194427	0.161557
chr4	70909745	70909845	1970579	0	+	0.56	(0.515,0.57]	chr4	197571	68	INTRON	INTRON	MOB1B	ENSG00000173542.9	ENST00000502869.5:ENST00000509041.5:ENST00000309395.7:ENST00000396051.2:ENST00000511449.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	28	2	1.94945	2.03958	2.12971	0.0757903	0.0414068	0.194427	0.161557
chr9	128500726	128500820	4205377	0	+	0.553191	(0.515,0.57]	chr9	384550	6	UTR3	UTR3:EXON_MRNA	ODF2	ENSG00000136811.17	ENST00000351030.8:ENST00000444119.7:ENST00000393527.8:ENST00000686232.1:ENST00000434106.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	28	2	1.94945	2.03958	2.12971	0.0757903	0.0414068	0.194427	0.161557
chr16	58563451	58563551	6495698	0	-	0.33	(0.32,0.35]	chr16	628558	27	INTRON	INTRON	CNOT1	ENSG00000125107.19	ENST00000317147.10:ENST00000569240.5:ENST00000567188.5:ENST00000441024.6:ENST00000569882.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	71	2	1.98909	2.0395700000000003	2.09005	0.0330483	0.0108865	0.133816	0.0923273
chr1	174011957	174012057	587941	0	-	0.53	(0.515,0.57]	chr1	70762	22	INTRON	INTRON	RC3H1:RC3H1-IT1	ENSG00000135870.12:ENSG00000236535.1	ENST00000367696.7:ENST00000421851.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	5	45	2	1.7492	2.039435	2.32967	0.0382504	0.0133671	0.15832	0.0946278
chr21	5123963	5124060	7424445	0	-	0.546392	(0.515,0.57]	chr21	757271	14	INTRON	INTRON	ENSG00000280071	ENSG00000280071.4	ENST00000624810.3:ENST00000625036.3:ENST00000620528.5:ENST00000620015.4:ENST00000624120.3:ENST00000624648.3:ENST00000624748.2:ENST00000623810.2:ENST00000624714.3:ENST00000623390.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	45	2	1.7492	2.039435	2.32967	0.0382504	0.0133671	0.15832	0.0946278
chr7	128010941	128011040	3406016	0	+	0.313131	(0.28,0.32]	chr7	318194	24	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000486037.1:ENST00000484767.5:ENST00000470723.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	67	2	2.00989	2.039365	2.06884	0.0427801	0.0152581	0.148082	0.108569
chr2	55004788	55004888	1120947	0	-	0.33	(0.32,0.35]	chr2	120142	167	INTRON	INTRON	RTN4	ENSG00000115310.19	ENST00000394609.6:ENST00000404909.5:ENST00000394611.6:ENST00000317610.11:ENST00000357732.8:ENST00000337526.11:ENST00000357376.7:ENST00000405240.5:ENST00000438462.1	protein_coding	protein_coding	protein_coding	protein_coding	11	122	2	1.91771	2.0393499999999998	2.16099	0.0127227	0.00364154	0.0926667	0.0556766
chr21	22346998	22347098	7385838	0	+	0.4	(0.378,0.408]	chr21	752727	1338	INTRON	INTRON	ENSG00000226043	ENSG00000226043.2	ENST00000667099.1:ENST00000654607.1:ENST00000444130.1	lncRNA	lncRNA	lncRNA	lncRNA	7	76	2	1.82258	2.03929	2.256	0.0341279	0.00336115	0.135102	0.0532154
chr7	158747295	158747395	3688978	0	-	0.42	(0.408,0.44]	chr7	342335	32	INTRON	INTRON	ESYT2	ENSG00000117868.18	ENST00000251527.10:ENST00000275418.13:ENST00000652148.1	protein_coding	protein_coding	protein_coding	protein_coding	8	81	2	1.74813	2.03926	2.33039	0.0163902	0.00598147	0.109715	0.0674604
chr15	81843055	81843155	6243734	0	-	0.42	(0.408,0.44]	chr15	595867	243	INTRON	INTRON	ENSG00000259692	ENSG00000259692.6	ENST00000559428.2:ENST00000560054.6:ENST00000560097.1:ENST00000559299.2	lncRNA	lncRNA	lncRNA	lncRNA	8	81	2	1.47066	2.039255	2.60785	0.0457145	0.00146754	0.149888	0.035104
chr6	147737216	147737316	2991370	0	+	0.42	(0.408,0.44]	chr6	280175	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	ENSG00000227681	ENSG00000227681.5	ENST00000427015.1:ENST00000432506.5:ENST00000442094.5:ENST00000434985.1	lncRNA	lncRNA	lncRNA	lncRNA	7	67	2	1.62843	2.03923	2.45003	0.025242	0.00990006	0.133676	0.0838372
chr18	36167722	36167818	6891829	0	+	0.614583	(0.57,1]	chr18	683075	1	INTRON	INTRON	ELP2	ENSG00000134759.14	ENST00000351393.10:ENST00000442325.6:ENST00000358232.11:ENST00000423854.6:ENST00000539560.5:ENST00000350494.10:ENST00000542824.5:ENST00000540766.5:ENST00000545302.5:ENST00000541748.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	15	77	2	1.77575	2.0391250000000003	2.3025	0.00515804	3.81114e-4	0.0630872	0.0176557
chr4	67871	67960	1905436	0	+	0.449438	(0.44,0.476]	chr4	191007	1	UTR3	UTR3:EXON_MRNA:INTRON	ZNF595	ENSG00000272602.6	ENST00000608255.2:ENST00000609518.5:ENST00000509152.3:ENST00000610261.6	protein_coding	protein_coding	protein_coding	protein_coding	82	831	2	1.97673	2.03907	2.10141	1.52377e-4	1.16818e-4	0.0106227	0.00977077
chr14	101821194	101821291	5819097	0	+	0.340206	(0.32,0.35]	chr14	551847	2	INTRON	INTRON	PPP2R5C	ENSG00000078304.20	ENST00000694906.1:ENST00000422945.6:ENST00000554442.5:ENST00000328724.9:ENST00000554504.1:ENST00000553890.1:ENST00000350249.7:ENST00000557621.5:ENST00000556946.1:ENST00000556307.5:ENST00000553730.5:ENST00000557714.1:ENST00000334743.9:ENST00000445439.7:ENST00000557095.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	63	2	1.77704	2.0390699999999997	2.3011	0.0719969	0.00617969	0.187322	0.0713552
chr8	6710141	6710240	3695019	0	+	0.333333	(0.32,0.35]	chr8	342828	2	INTRON	INTRON	AGPAT5	ENSG00000155189.12	ENST00000285518.11:ENST00000523234.5:ENST00000518327.1:ENST00000523586.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	74	2	1.8903	2.039035	2.18777	0.0298043	0.00951422	0.129138	0.0863913
chr1	65289782	65289882	135891	0	+	0.42	(0.408,0.44]	chr1	15346	245	INTRON	INTRON	DNAJC6	ENSG00000116675.16	ENST00000463018.5:ENST00000494710.6:ENST00000263441.11:ENST00000395325.7:ENST00000483402.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	109	2	1.71548	2.0389999999999997	2.36252	0.0101701	0.00260554	0.089002	0.0455058
chr22	20517781	20517880	7479449	0	+	0.454545	(0.44,0.476]	chr22	762951	90	INTRON	INTRON	MED15	ENSG00000099917.17	ENST00000445987.5:ENST00000444094.5:ENST00000414658.5:ENST00000486656.5:ENST00000433831.5:ENST00000432052.5:ENST00000292733.11:ENST00000263205.11:ENST00000477824.5:ENST00000406969.5:ENST00000382974.6:ENST00000441501.5:ENST00000438962.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	50	2	1.40212	2.03892	2.67572	0.0524678	0.0212064	0.178047	0.113017
chr3	154311044	154311135	1843401	0	-	0.450549	(0.44,0.476]	chr3	185456	9	INTRON	INTRON	DHX36	ENSG00000174953.14	ENST00000496811.6:ENST00000308361.10:ENST00000329463.9:ENST00000481941.5:ENST00000462464.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	50	2	1.40212	2.03892	2.67572	0.0524678	0.0212064	0.178047	0.113017
chr21	22348098	22348198	7385849	0	+	0.4	(0.378,0.408]	chr21	752727	1349	INTRON	INTRON	ENSG00000226043	ENSG00000226043.2	ENST00000667099.1:ENST00000654607.1:ENST00000444130.1	lncRNA	lncRNA	lncRNA	lncRNA	6	63	2	1.56313	2.038885	2.51464	0.0474151	0.00684341	0.153019	0.0748032
chr11	62882328	62882416	4799603	0	+	0.363636	(0.35,0.378]	chr11	444819	4	EXON_MRNA	EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SLC3A2	ENSG00000168003.18	ENST00000680729.1:ENST00000680002.1:ENST00000681467.1:ENST00000377890.6:ENST00000538084.2:ENST00000681569.1:ENST00000680725.1:ENST00000377891.6:ENST00000377889.6:ENST00000681215.1:ENST00000535296.5:ENST00000680631.1:ENST00000544377.2:ENST00000680610.1:ENST00000680297.1:ENST00000680134.1:ENST00000681232.1:ENST00000681657.1:ENST00000541425.6:ENST00000679908.1:ENST00000681563.1:ENST00000338663.12:ENST00000680654.1:ENST00000681107.1:ENST00000541649.2:ENST00000538682.6:ENST00000536981.6:ENST00000539891.6:ENST00000679594.1:ENST00000535768.2:ENST00000537508.6:ENST00000537839.5:ENST00000546253.5:ENST00000457660.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	14	151	2	1.93774	2.03874	2.13974	0.0149786	6.58522e-4	0.0994339	0.0232396
chr9	134159671	134159770	4219760	0	+	0.585859	(0.57,1]	chr9	387328	18	UTR3	UTR3:EXON_MRNA	WDR5	ENSG00000196363.10	ENST00000358625.4	protein_coding	protein_coding	protein_coding	protein_coding	7	35	2	1.2666	2.038585	2.81057	0.0788045	0.00169295	0.198736	0.0381936
chr15	95078077	95078177	6107422	0	+	0.33	(0.32,0.35]	chr15	581726	87	INTRON	INTRON	ENSG00000277654	ENSG00000277654.6	ENST00000621842.4:ENST00000615751.4:ENST00000616940.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	5	63	2	1.61669	2.03848	2.46027	0.0578816	0.0108973	0.188651	0.0873034
chr1	10273923	10274021	21297	0	+	0.479592	(0.476,0.515]	chr1	2097	5	INTRON	INTRON	KIF1B	ENSG00000054523.20	ENST00000676179.1:ENST00000377093.9:ENST00000696500.1:ENST00000263934.10:ENST00000696502.1:ENST00000696503.1:ENST00000696504.1:ENST00000377086.5:ENST00000377083.5:ENST00000377081.5:ENST00000620295.2:ENST00000622724.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	52	2	1.86014	2.038455	2.21677	0.0277606	0.0207026	0.137011	0.110999
chr12	122211345	122211444	5439561	0	-	0.515152	(0.476,0.515]	chr12	520165	11	INTRON	INTRON	DIABLO	ENSG00000184047.20	ENST00000443649.9:ENST00000650715.1:ENST00000464942.7:ENST00000353548.11:ENST00000644227.1:ENST00000644509.1:ENST00000342392.3:ENST00000645569.1:ENST00000267169.11:ENST00000489781.3:ENST00000540535.6:ENST00000642640.1:ENST00000439489.6:ENST00000541273.6:ENST00000474004.6:ENST00000541656.6:ENST00000446652.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	52	2	1.86014	2.038455	2.21677	0.0277606	0.0207026	0.137011	0.110999
chrX	123897521	123897620	7716565	0	+	0.494949	(0.476,0.515]	chrX	789429	44	INTRON	INTRON	XIAP	ENSG00000101966.13	ENST00000481776.5:ENST00000434753.7:ENST00000497906.5:ENST00000468691.5:ENST00000371199.8:ENST00000497640.1:ENST00000355640.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	52	2	1.86014	2.038455	2.21677	0.0277606	0.0207026	0.137011	0.110999
chr20	47271018	47271118	7348644	0	-	0.43	(0.408,0.44]	chr20	749288	82	INTRON	INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000467200.6:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000468376.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	74	2	1.94531	2.03844	2.13157	0.0136489	0.0109031	0.0949306	0.0923273
chr2	15533842	15533942	1072887	0	-	0.28	[0,0.28]	chr2	114441	221	INTRON	INTRON	NBAS	ENSG00000151779.13	ENST00000281513.10	protein_coding	protein_coding	protein_coding	protein_coding	6	88	2	1.87045	2.0384349999999998	2.20642	0.0280845	0.0191786	0.125065	0.119771
chr11	118751899	118751998	5045960	0	-	0.323232	(0.32,0.35]	chr11	475731	43	UTR3	UTR3:EXON_MRNA	DDX6	ENSG00000110367.14	ENST00000534980.7:ENST00000620157.4:ENST00000529162.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	111	2	1.56183	2.0383500000000003	2.51487	0.0202633	0.00349334	0.121406	0.0523105
chr1	26776256	26776356	52003	0	+	0.41	(0.408,0.44]	chr1	6646	3	SS5_PROX	SS5_PROX:INTRON	ARID1A	ENSG00000117713.21	ENST00000430799.7:ENST00000324856.13:ENST00000457599.6:ENST00000374152.7:ENST00000636219.1:ENST00000466382.2:ENST00000532781.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	18	182	2	1.96898	2.03834	2.1077	0.00262546	8.89302e-4	0.0456756	0.0272462
chr15	43828866	43828965	6012652	0	+	0.40404	(0.378,0.408]	chr15	572754	1	INTRON	INTRON	WDR76	ENSG00000092470.12	ENST00000381246.6:ENST00000452115.1:ENST00000263795.11	protein_coding	protein_coding	protein_coding	protein_coding	8	85	2	1.76455	2.03818	2.31181	0.0180091	0.00548372	0.106756	0.0671431
chr19	49488044	49488144	7089815	0	+	0.5	(0.476,0.515]	chr19	709950	4	SS5_PROX	SS5_PROX:INTRON	RPL13A	ENSG00000142541.18	ENST00000679106.1:ENST00000621674.4:ENST00000624069.3:ENST00000678510.1:ENST00000676477.1:ENST00000391857.9:ENST00000488946.1:ENST00000484279.5:ENST00000486930.6:ENST00000472481.5:ENST00000677048.1:ENST00000678146.1:ENST00000479992.5:ENST00000676556.1:ENST00000477613.6:ENST00000467825.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	20	225	2	1.75592	2.03808	2.32024	0.00862128	1.78105e-4	0.0838846	0.0121697
chr1	46718371	46718467	444442	0	-	0.458333	(0.44,0.476]	chr1	53914	3	UTR5	UTR5:EXON_MRNA	EFCAB14	ENSG00000159658.15	ENST00000674268.1:ENST00000371933.8:ENST00000672422.2:ENST00000674435.1:ENST00000479745.6:ENST00000674495.1:ENST00000674263.1:ENST00000459797.2:ENST00000674415.1:ENST00000484461.2:ENST00000674302.1:ENST00000674331.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	74	2	1.38315	2.0380599999999998	2.69297	0.0472692	0.00333494	0.152795	0.0528877
chr5	139316188	139316288	2499613	0	+	0.3	(0.28,0.32]	chr5	238931	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	MATR3	ENSG00000280987.4:ENSG00000015479.20	ENST00000509990.5:ENST00000361059.7:ENST00000394800.6:ENST00000502929.5:ENST00000504203.5:ENST00000509644.5:ENST00000512876.5:ENST00000513678.5:ENST00000504045.5:ENST00000504311.5:ENST00000502499.5:ENST00000510056.5:ENST00000511249.5:ENST00000394805.8:ENST00000509918.5:ENST00000503811.5:ENST00000511978.5:ENST00000618441.5:ENST00000514528.5:ENST00000504643.5:ENST00000515833.2:ENST00000505625.5:ENST00000511333.5:ENST00000502422.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	57	2	1.56118	2.03803	2.51488	0.0467152	0.0380957	0.1676	0.141678
chr20	438390	438487	7302980	0	-	0.546392	(0.515,0.57]	chr20	743433	31	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	TBC1D20	ENSG00000125875.15	ENST00000680792.1:ENST00000354200.5:ENST00000461304.5:ENST00000681539.1:ENST00000679741.1:ENST00000680990.1:ENST00000681129.1:ENST00000681414.1:ENST00000681441.1:ENST00000680088.1:ENST00000680284.1:ENST00000681777.1:ENST00000681389.1:ENST00000679895.1:ENST00000680491.1:ENST00000679451.1:ENST00000679953.1:ENST00000461188.6:ENST00000680815.1:ENST00000680521.1:ENST00000681193.1:ENST00000681551.1:ENST00000679973.1:ENST00000680911.1:ENST00000679944.1:ENST00000681636.1:ENST00000680106.1:ENST00000494633.1:ENST00000680050.1:ENST00000681742.1:ENST00000680515.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	62	2	1.44339	2.0379449999999997	2.6325	0.0352285	0.00439001	0.150284	0.0585064
chr17	64521527	64521627	6662051	0	+	0.36	(0.35,0.378]	chr17	650230	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	CEP95	ENSG00000258890.8	ENST00000579860.5:ENST00000556440.7:ENST00000553956.6:ENST00000577960.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	69	2	1.91706	2.037915	2.15877	0.026412	0.0102036	0.122506	0.089002
chr1	226063681	226063781	327776	0	+	0.55	(0.515,0.57]	chr1	37741	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	H3-3A	ENSG00000163041.13	ENST00000366816.5:ENST00000366814.3:ENST00000366815.10:ENST00000653960.1:ENST00000655399.1:ENST00000667897.1:ENST00000656829.1:ENST00000666609.1:ENST00000661429.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	14	119	2	1.99675	2.0379050000000003	2.07906	0.00417042	0.00118955	0.0570595	0.031662
chr16	57177621	57177716	6493022	0	-	0.389474	(0.378,0.408]	chr16	627975	16	INTRON	INTRON	PSME3IP1	ENSG00000172775.17	ENST00000309137.13:ENST00000566077.5:ENST00000569266.5:ENST00000567439.5:ENST00000564108.5:ENST00000562324.5:ENST00000567044.5:ENST00000565458.5:ENST00000562406.5:ENST00000566584.5:ENST00000568671.5:ENST00000565760.5:ENST00000566481.5:ENST00000570184.1:ENST00000566681.1	protein_coding	protein_coding	protein_coding	protein_coding	5	55	2	1.77782	2.0379	2.29798	0.0388177	0.0147606	0.143072	0.106702
chr8	116869539	116869638	4034602	0	-	0.393939	(0.378,0.408]	chr8	368151	24	INTRON	INTRON	RAD21	ENSG00000164754.16	ENST00000297338.7:ENST00000517485.6:ENST00000519837.6:ENST00000522699.2:ENST00000687358.1:ENST00000520992.6:ENST00000517749.2:ENST00000685972.1:ENST00000687902.1:ENST00000523547.2:ENST00000686622.1:ENST00000688033.1:ENST00000689504.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	97	2	1.75204	2.037895	2.32375	0.0268575	0.00134834	0.123442	0.0338207
chr16	70378635	70378733	6510850	0	-	0.530612	(0.515,0.57]	chr16	630648	28	UTR3	UTR3:EXON_MRNA	ST3GAL2	ENSG00000157350.13	ENST00000342907.3:ENST00000393640.8	protein_coding	protein_coding	protein_coding	protein_coding	18	160	2	1.86278	2.037845	2.21291	0.00367957	4.09219e-4	0.0561162	0.0185802
chr5	43144395	43144495	2349263	0	+	0.47	(0.44,0.476]	chr5	226667	47	INTRON	INTRON	ZNF131	ENSG00000172262.12	ENST00000515326.5:ENST00000682664.1:ENST00000510026.5:ENST00000504359.1:ENST00000509156.5:ENST00000508259.5:ENST00000507218.5:ENST00000306938.8:ENST00000505606.6:ENST00000509634.5:ENST00000509341.5:ENST00000511736.5:ENST00000509931.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	60	2	1.88483	2.037805	2.19078	0.0226089	0.0149825	0.117489	0.107704
chr2	96886656	96886756	1182091	0	-	0.58	(0.57,1]	chr2	126720	78	INTRON	INTRON	FAM178B	ENSG00000168754.15	ENST00000393526.6:ENST00000490605.3:ENST00000470789.5:ENST00000494172.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	15	77	2	1.96307	2.0377400000000003	2.11241	0.00190628	0.00141019	0.0403772	0.0340865
chr2	189450408	189450507	952709	0	+	0.50505	(0.476,0.515]	chr2	103636	12	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	WDR75	ENSG00000115368.10	ENST00000436347.5:ENST00000472286.5:ENST00000475596.1:ENST00000314761.9:ENST00000427960.5:ENST00000631047.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	83	2	1.95469	2.037635	2.12058	0.0115753	0.00686728	0.0962115	0.071646
chr6	159788695	159788781	3254697	0	-	0.383721	(0.378,0.408]	chr6	302552	2	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	TCP1	ENSG00000120438.12	ENST00000321394.12:ENST00000544255.5:ENST00000420894.6:ENST00000392168.6:ENST00000539756.1:ENST00000543532.5:ENST00000538530.5:ENST00000538128.5:ENST00000543517.5:ENST00000537390.5:ENST00000536394.1:ENST00000536607.1:ENST00000546023.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	116	2	2.00012	2.037595	2.07507	0.00748818	0.00284959	0.074841	0.0494641
chr11	73676423	73676521	4984935	0	-	0.285714	(0.28,0.32]	chr11	470845	9	UTR3	UTR3:EXON_MRNA	RAB6A	ENSG00000175582.20	ENST00000310653.10:ENST00000336083.8	protein_coding	protein_coding	protein_coding	protein_coding	8	94	2	1.70551	2.03757	2.36963	0.0159371	0.0157022	0.109464	0.101453
chr13	95234609	95234684	5639204	0	-	0.413333	(0.408,0.44]	chr13	537154	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	ABCC4	ENSG00000125257.16	ENST00000645237.2:ENST00000643051.1:ENST00000643842.1:ENST00000646439.1:ENST00000643816.1:ENST00000536256.3:ENST00000643556.1:ENST00000629385.1:ENST00000642524.1:ENST00000645532.1:ENST00000644471.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	14	139	2	1.98453	2.0375449999999997	2.09056	0.00766144	9.77426e-4	0.075364	0.0287765
chr17	46099295	46099395	6783927	0	-	0.34	(0.32,0.35]	chr17	669208	42	INTRON	INTRON	KANSL1	ENSG00000120071.15	ENST00000574590.6:ENST00000572904.6:ENST00000432791.7:ENST00000575318.6:ENST00000638275.1:ENST00000262419.10:ENST00000648792.1:ENST00000639531.1:ENST00000639150.1:ENST00000639853.1:ENST00000571698.2:ENST00000639375.1:ENST00000577114.2:ENST00000638269.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	74	2	1.92705	2.03749	2.14793	0.0267365	0.0110079	0.123349	0.0927187
chr19	44964458	44964557	7078227	0	+	0.525253	(0.515,0.57]	chr19	707871	20	INTRON	INTRON	CLPTM1	ENSG00000104853.16	ENST00000588855.5:ENST00000541297.6:ENST00000546079.5:ENST00000337392.10:ENST00000591304.1:ENST00000585961.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	58	2	1.86218	2.037455	2.21273	0.0196151	0.0100169	0.109486	0.0880217
chr9	135942589	135942689	4372372	0	-	0.44	(0.408,0.44]	chr9	402519	3	SS3_PROX	SS3_PROX:INTRON	UBAC1	ENSG00000130560.9	ENST00000371756.4:ENST00000489050.5:ENST00000465873.5:ENST00000471163.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	30	299	2	2.02245	2.0373650000000003	2.05228	9.11755e-4	3.46264e-4	0.0278396	0.0165679
chr1	71070326	71070426	482917	0	-	0.29	(0.28,0.32]	chr1	57857	1	SS5_PROX	SS5_PROX:INTRON	ZRANB2	ENSG00000132485.14	ENST00000370920.8:ENST00000254821.10:ENST00000611683.1	protein_coding	protein_coding	protein_coding	protein_coding	8	94	2	1.27925	2.03733	2.79541	0.0642509	0.00376367	0.19963	0.0539127
chr12	49742916	49743016	5134941	0	+	0.34	(0.32,0.35]	chr12	484113	1	SS3_PROX	SS3_PROX:SS5_PROX:INTRON	TMBIM6	ENSG00000139644.13	ENST00000548809.5:ENST00000551154.5:ENST00000546796.5:ENST00000549966.5:ENST00000547832.5:ENST00000547187.5:ENST00000267115.10:ENST00000552699.5:ENST00000552635.5:ENST00000546914.5:ENST00000548894.5:ENST00000549445.5:ENST00000550951.5:ENST00000549385.5:ENST00000548201.5:ENST00000548713.5:ENST00000423828.5:ENST00000550445.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	75	2	1.97654	2.037235	2.09793	0.0199113	0.0156788	0.120668	0.101453
chr1	25430857	25430937	47945	0	+	0.675	(0.57,1]	chr1	5915	1	UTR5	UTR5:EXON_MRNA	MACO1	ENSG00000204178.11	ENST00000399766.7:ENST00000374343.5	protein_coding	protein_coding	protein_coding	protein_coding	4	23	2	1.9042	2.03723	2.17026	0.0476976	0.0220522	0.153019	0.123836
chr16	88746995	88747094	6539839	0	-	0.616162	(0.57,1]	chr16	633992	42	INTRON	INTRON	PIEZO1	ENSG00000103335.22	ENST00000301015.14	protein_coding	protein_coding	protein_coding	protein_coding	4	23	2	1.9042	2.03723	2.17026	0.0476976	0.0220522	0.153019	0.123836
chr2	241297950	241298049	1348392	0	-	0.585859	(0.57,1]	chr2	141648	250	INTRON	INTRON	HDLBP	ENSG00000115677.18	ENST00000310931.10:ENST00000391976.6:ENST00000428482.5:ENST00000430918.5:ENST00000441124.5:ENST00000413241.5:ENST00000423693.5:ENST00000425989.5:ENST00000420451.5:ENST00000417540.5:ENST00000462130.1:ENST00000496569.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	23	2	1.9042	2.03723	2.17026	0.0476976	0.0220522	0.153019	0.123836
chr2	61506567	61506666	1130899	0	-	0.373737	(0.35,0.378]	chr2	121597	39	INTRON	INTRON	XPO1	ENSG00000082898.19	ENST00000677110.1:ENST00000676553.1:ENST00000677556.1:ENST00000677814.1:ENST00000676771.1:ENST00000677803.1:ENST00000677239.1:ENST00000678790.1:ENST00000677928.1:ENST00000678182.1:ENST00000677150.1:ENST00000678172.1:ENST00000678360.1:ENST00000678081.1:ENST00000676889.1:ENST00000676783.1:ENST00000679035.1:ENST00000677422.1:ENST00000677417.1:ENST00000677813.1:ENST00000676999.1:ENST00000676667.1:ENST00000678263.1:ENST00000678877.1:ENST00000677933.1:ENST00000680228.1:ENST00000677289.1:ENST00000677190.1:ENST00000401558.7:ENST00000428210.5:ENST00000677290.1:ENST00000677850.1:ENST00000451765.6:ENST00000676789.1:ENST00000678741.1:ENST00000404992.6:ENST00000406957.5:ENST00000443240.5:ENST00000476585.5:ENST00000468259.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	79	2	1.9392	2.03722	2.13524	0.0130865	0.0126486	0.0982897	0.0934394
chr12	110730680	110730759	5411409	0	-	0.443038	(0.44,0.476]	chr12	516729	3	CDS	CDS:EXON_MRNA	PPP1CC	ENSG00000186298.12	ENST00000335007.10:ENST00000340766.9:ENST00000550261.5:ENST00000546933.5:ENST00000550991.5:ENST00000551676.5:ENST00000620030.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:nonsense_mediated_decay	13	114	2	1.65681	2.03719	2.41757	0.00707045	0.00417342	0.0754923	0.057064
chr3	177160988	177161088	1872082	0	-	0.22	[0,0.28]	chr3	187426	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	TBL1XR1	ENSG00000177565.18	ENST00000457928.7:ENST00000430069.5:ENST00000673974.1:ENST00000352800.10:ENST00000422442.6:ENST00000428970.5:ENST00000424913.5:ENST00000437738.5:ENST00000431421.5:ENST00000635794.1:ENST00000630796.2:ENST00000450267.5:ENST00000630833.2:ENST00000431674.5:ENST00000422066.5:ENST00000443315.5:ENST00000627825.2:ENST00000427349.5:ENST00000413084.5:ENST00000637137.1:ENST00000491623.2:ENST00000637544.1:ENST00000636187.1:ENST00000636912.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	9	136	2	1.88199	2.03719	2.19239	0.0234167	0.00375415	0.118544	0.0562562
chr21	6662457	6662556	7425798	0	-	0.313131	(0.28,0.32]	chr21	757499	25	INTRON	INTRON	ENSG00000280145	ENSG00000280145.3	ENST00000625185.3:ENST00000624846.3:ENST00000623313.1:ENST00000624965.1	lncRNA	lncRNA	lncRNA	lncRNA	8	93	2	1.4463	2.037175	2.62805	0.0388417	0.00681001	0.160515	0.0711884
chr1	147943490	147943544	212941	0	+	0.351852	(0.35,0.378]	chr1	23647	2	CDS	CDS:EXON_MRNA	GPR89B	ENSG00000188092.15	ENST00000478307.5:ENST00000488165.5:ENST00000314163.12:ENST00000468618.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	35	2	1.82887	2.03711	2.24535	0.0647516	0.0584878	0.189395	0.179192
chr2	15436370	15436470	1071898	0	-	0.37	(0.35,0.378]	chr2	114368	82	INTRON	INTRON	NBAS	ENSG00000151779.13	ENST00000281513.10	protein_coding	protein_coding	protein_coding	protein_coding	3	35	2	1.82887	2.03711	2.24535	0.0647516	0.0584878	0.189395	0.179192
chr2	25798390	25798489	1084733	0	-	0.363636	(0.35,0.378]	chr2	115929	39	INTRON	INTRON	ASXL2	ENSG00000143970.18	ENST00000435504.9:ENST00000336112.9:ENST00000497092.1	protein_coding	protein_coding	protein_coding	protein_coding	3	35	2	1.82887	2.03711	2.24535	0.0647516	0.0584878	0.189395	0.179192
chr17	48618769	48618868	6791454	0	-	0.585859	(0.57,1]	chr17	670052	79	INTRON	INTRON	HOXB7	ENSG00000260027.5	ENST00000567101.2	protein_coding	processed_transcript	protein_coding	processed_transcript	4	23	2	2.02391	2.0370850000000003	2.05026	0.0339274	0.0321326	0.145026	0.134508
chr7	5047259	5047350	3271729	0	+	0.615385	(0.57,1]	chr7	304054	5	INTRON	INTRON	RBAK	ENSG00000146587.18	ENST00000353796.7:ENST00000396912.2	protein_coding	protein_coding	protein_coding	protein_coding	4	23	2	2.02391	2.0370850000000003	2.05026	0.0339274	0.0321326	0.145026	0.134508
chr7	75466906	75467006	3558736	0	-	0.48	(0.476,0.515]	chr7	331545	243	INTRON	INTRON	POM121C	ENSG00000272391.6	ENST00000615331.5:ENST00000398379.2	protein_coding	protein_coding	protein_coding	protein_coding	7	72	2	1.82798	2.03705	2.24612	0.0184548	0.00799949	0.116598	0.0766625
chr15	82384049	82384149	6075821	0	+	0.41	(0.408,0.44]	chr15	578727	283	INTRON	INTRON	UBE2Q2P2	ENSG00000259429.5	ENST00000618775.4	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	18	188	2	1.46727	2.037035	2.6068	0.0218432	4.22356e-5	0.11491	0.0052667
chr7	130083800	130083900	3413727	0	+	0.43	(0.408,0.44]	chr7	319098	126	INTRON	INTRON	KLHDC10	ENSG00000128607.14	ENST00000335420.10:ENST00000463413.1:ENST00000468226.1	protein_coding	protein_coding	protein_coding	protein_coding	9	79	2	1.50103	2.0369900000000003	2.57295	0.0237058	0.00640423	0.129075	0.0694534
chr12	116208160	116208260	5424853	0	-	0.45	(0.44,0.476]	chr12	518271	270	INTRON	INTRON	MED13L	ENSG00000123066.9	ENST00000281928.9:ENST00000650226.1:ENST00000548743.2:ENST00000647567.1:ENST00000551197.2	protein_coding	protein_coding	protein_coding	protein_coding	7	72	2	1.98938	2.036955	2.08453	0.0198602	0.00689	0.109608	0.0750118
chr2	28754973	28755073	724681	0	+	0.29	(0.28,0.32]	chr2	83720	24	INTRON	INTRON	PPP1CB	ENSG00000213639.10	ENST00000455580.5:ENST00000420282.5:ENST00000441461.5:ENST00000427786.1:ENST00000358506.6:ENST00000296122.10:ENST00000395366.3:ENST00000464273.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	144	2	1.96974	2.03693	2.10412	0.00647448	0.0055925	0.0699952	0.0678837
chr5	112987868	112987966	2453493	0	+	0.438776	(0.408,0.44]	chr5	235079	15	INTRON	INTRON	DCP2	ENSG00000172795.17	ENST00000515408.5:ENST00000513585.6:ENST00000502635.2:ENST00000389063.3:ENST00000674880.1:ENST00000512751.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	50	2	1.35436	2.036735	2.71911	0.0603719	0.0189489	0.19151	0.108861
chr7	76604397	76604497	3340912	0	+	0.43	(0.408,0.44]	chr7	311170	525	INTRON	INTRON	ENSG00000205485	ENSG00000205485.13	ENST00000418663.5:ENST00000450661.1:ENST00000423084.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	6	50	2	1.35436	2.036735	2.71911	0.0603719	0.0189489	0.19151	0.108861
chr19	28518619	28518719	7166281	0	-	0.56	(0.515,0.57]	chr19	724189	504	INTRON	INTRON	ENSG00000283403:ENSG00000267243	ENSG00000283403.1:ENSG00000267243.6	ENST00000592347.5:ENST00000593065.5	lncRNA	lncRNA	lncRNA	lncRNA	40	334	2	1.96503	2.03669	2.10835	4.76813e-4	1.01573e-4	0.0202392	0.00850967
chr17	59839277	59839375	6643727	0	+	0.489796	(0.476,0.515]	chr17	648784	10	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	VMP1	ENSG00000062716.13	ENST00000262291.9:ENST00000592619.5:ENST00000591877.1:ENST00000591782.1:ENST00000588617.1:ENST00000592790.1:ENST00000587470.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	44	397	2	1.74476	2.0366400000000002	2.32852	8.35355e-4	1.69566e-4	0.0263691	0.011961
chr16	74585688	74585788	6525118	0	-	0.32	(0.28,0.32]	chr16	631842	225	INTRON	INTRON	GLG1	ENSG00000090863.12	ENST00000205061.9:ENST00000422840.7:ENST00000447066.6:ENST00000562090.5:ENST00000567951.5:ENST00000627032.2:ENST00000565260.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	67	2	1.64432	2.0365	2.42868	0.0606133	0.0105331	0.171142	0.0908969
chr4	169690129	169690229	2080579	0	+	0.5	(0.476,0.515]	chr4	205639	2	SS3_PROX	SS3_PROX:INTRON	CLCN3	ENSG00000109572.15	ENST00000347613.8:ENST00000360642.7:ENST00000513761.6:ENST00000613795.4:ENST00000507875.5	protein_coding	protein_coding	protein_coding	protein_coding	5	53	2	1.86492	2.036405	2.20789	0.0550347	0.00820497	0.165463	0.081115
chr3	142185007	142185107	1835742	0	-	0.53	(0.515,0.57]	chr3	184433	4	UTR3	UTR3:EXON_MRNA:INTRON	GK5	ENSG00000175066.16	ENST00000392993.7:ENST00000492097.5:ENST00000480757.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	38	2	1.86007	2.0364	2.21273	0.0526611	0.0196151	0.178401	0.109486
chr2	107700461	107700561	1205553	0	-	0.38	(0.378,0.408]	chr2	128520	10	INTRON	INTRON	LINC01885:ENSG00000286769	ENSG00000237880.2:ENSG00000286769.1	ENST00000654481.1:ENST00000669817.1	lncRNA	lncRNA	lncRNA	lncRNA	11	116	2	1.74904	2.0363949999999997	2.32375	0.0141676	0.00134834	0.0959618	0.0338207
chr5	95735011	95735110	2431279	0	+	0.353535	(0.35,0.378]	chr5	233640	24	INTRON	INTRON	RHOBTB3	ENSG00000164292.13	ENST00000510226.5:ENST00000504949.1:ENST00000506959.5:ENST00000379982.8:ENST00000512878.1:ENST00000510623.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	88	2	1.57247	2.036385	2.5003	0.0350068	0.00256148	0.137535	0.0466761
chr10	117349590	117349690	4702449	0	-	0.53	(0.515,0.57]	chr10	433752	81	INTRON	INTRON	PDZD8	ENSG00000165650.12	ENST00000334464.7:ENST00000489491.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	54	2	1.75372	2.03637	2.31902	0.0386904	0.00493032	0.14279	0.0646039
chr14	96537714	96537807	5810538	0	+	0.365591	(0.35,0.378]	chr14	550936	8	EXON_LNCRNA	EXON_LNCRNA:INTRON	PAPOLA	ENSG00000090060.19	ENST00000618976.2:ENST00000216277.13:ENST00000553689.5:ENST00000392990.6:ENST00000555626.5:ENST00000554666.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	81	2	1.70607	2.036365	2.36666	0.0482819	0.00212276	0.153283	0.0426185
chr7	102377414	102377513	3371213	0	+	0.30303	(0.28,0.32]	chr7	315442	7	INTRON	INTRON	PRKRIP1:ENSG00000239969	ENSG00000128563.13:ENSG00000239969.6	ENST00000477886.5:ENST00000469763.5:ENST00000482549.5:ENST00000496391.5:ENST00000484974.5:ENST00000492837.1:ENST00000482465.5:ENST00000462601.5	protein_coding	protein_coding	protein_coding:transcribed_unprocessed_pseudogene	protein_coding:processed_transcript	17	201	2	1.61726	2.036365	2.45547	0.00805391	0.00155387	0.0805393	0.0359141
chr5	131785323	131785423	2720628	0	-	0.55	(0.515,0.57]	chr5	255730	403	INTRON	INTRON	FNIP1	ENSG00000217128.13	ENST00000510461.6:ENST00000307954.12:ENST00000307968.11:ENST00000511848.1	protein_coding	protein_coding	protein_coding	protein_coding	13	111	2	1.92814	2.03632	2.1445	0.00827421	8.25264e-4	0.0774402	0.0262794
chr7	129047785	129047885	3636510	0	-	0.33	(0.32,0.35]	chr7	338148	57	INTRON	INTRON	TNPO3	ENSG00000064419.14	ENST00000627585.2:ENST00000265388.10:ENST00000471234.5:ENST00000482320.5:ENST00000471166.1	protein_coding	protein_coding	protein_coding	protein_coding	11	131	2	2.00192	2.0362600000000004	2.0706	0.00848699	0.00327434	0.0778788	0.0526715
chr1	211748609	211748708	630578	0	-	0.444444	(0.44,0.476]	chr1	74619	53	UTR3	UTR3:EXON_MRNA	LPGAT1	ENSG00000123684.13	ENST00000366997.9	protein_coding	protein_coding	protein_coding	protein_coding	8	73	2	1.20796	2.0362400000000003	2.86452	0.0783119	0.00159222	0.197588	0.0367961
chrX	44882986	44883086	7648700	0	+	0.32	(0.28,0.32]	chrX	782726	86	INTRON	INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000675440.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000621147.5:ENST00000475233.1:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	50	2	1.81152	2.03621	2.2609	0.0671429	0.034446	0.183051	0.147767
chr22	32486284	32486380	7507839	0	+	0.40625	(0.378,0.408]	chr22	766241	7	INTRON	INTRON	FBXO7	ENSG00000100225.18	ENST00000420700.5:ENST00000425028.5:ENST00000266087.12:ENST00000492535.1:ENST00000452138.3:ENST00000397426.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	55	2	1.88729	2.036205	2.18512	0.0532327	0.00902136	0.162538	0.0851259
chr11	62593307	62593401	4959790	0	-	0.574468	(0.57,1]	chr11	466322	2	UTR3	UTR3:EXON_MRNA	MTA2	ENSG00000149480.7	ENST00000278823.7:ENST00000524902.5	protein_coding	protein_coding	protein_coding	protein_coding	27	132	2	1.73748	2.036185	2.33489	0.00122064	8.66277e-5	0.0320353	0.00783027
chr7	65895837	65895936	3323103	0	+	0.343434	(0.32,0.35]	chr7	309012	219	INTRON	INTRON	VKORC1L1	ENSG00000196715.7	ENST00000360768.5:ENST00000648187.1:ENST00000648179.1:ENST00000434382.2	protein_coding	protein_coding	protein_coding	protein_coding	6	70	2	1.76503	2.0361700000000003	2.30731	0.0240772	0.0176772	0.129859	0.10525
chr12	123461674	123461772	5242878	0	+	0.326531	(0.32,0.35]	chr12	498236	14	INTRON	INTRON	SNRNP35	ENSG00000184209.15	ENST00000527158.2:ENST00000529201.1:ENST00000526639.3:ENST00000412157.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	52	2	1.49965	2.03614	2.57263	0.0542985	0.0312297	0.182243	0.13151
chr1	36227858	36227958	72965	0	+	0.53	(0.515,0.57]	chr1	9371	20	INTRON	INTRON	THRAP3	ENSG00000054118.15	ENST00000469141.6:ENST00000648638.1:ENST00000354618.10	protein_coding	protein_coding	protein_coding	protein_coding	6	54	2	2.00468	2.03613	2.06758	0.0166344	0.0140038	0.110511	0.0959618
chr12	122131891	122131991	5240402	0	+	0.41	(0.408,0.44]	chr12	497524	2	SS3_PROX	SS3_PROX:INTRON	MLXIP	ENSG00000175727.14	ENST00000319080.12:ENST00000539861.5:ENST00000538061.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	103	2	1.98453	2.03613	2.08773	0.00766144	0.00404379	0.075364	0.0578376
chr19	57292713	57292810	7103654	0	+	0.412371	(0.408,0.44]	chr19	712862	6	UTR3	UTR3:EXON_MRNA	ZNF460	ENSG00000197714.9	ENST00000360338.4	protein_coding	protein_coding	protein_coding	protein_coding	10	103	2	1.98453	2.03613	2.08773	0.00766144	0.00404379	0.075364	0.0578376
chr7	105355856	105355956	3603575	0	-	0.53	(0.515,0.57]	chr7	336161	489	INTRON	INTRON	SRPK2	ENSG00000135250.17	ENST00000393651.8:ENST00000482897.5:ENST00000460391.5:ENST00000462282.5:ENST00000465112.5:ENST00000482862.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	54	2	2.00468	2.03613	2.06758	0.0166344	0.0140038	0.110511	0.0959618
chr1	32628759	32628858	415492	0	-	0.484848	(0.476,0.515]	chr1	50114	5	INTRON	INTRON	ZBTB8OS	ENSG00000176261.16	ENST00000341885.6:ENST00000468695.6:ENST00000492007.6:ENST00000373506.8:ENST00000436661.6:ENST00000473294.7:ENST00000373501.6:ENST00000498691.5:ENST00000467652.5:ENST00000476493.6:ENST00000465588.2:ENST00000483138.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	32	2	1.8388	2.0360750000000003	2.23335	0.0634557	0.0564473	0.184423	0.177047
chr17	1366445	1366544	6699270	0	-	0.50505	(0.476,0.515]	chr17	655546	10	INTRON	INTRON	YWHAE	ENSG00000108953.17	ENST00000264335.13:ENST00000571732.5:ENST00000573026.1:ENST00000573196.5:ENST00000575977.1:ENST00000469398.5:ENST00000486241.1:ENST00000489287.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	32	2	1.8388	2.0360750000000003	2.23335	0.0634557	0.0564473	0.184423	0.177047
chr2	61387308	61387407	1129712	0	-	0.50505	(0.476,0.515]	chr2	121474	36	INTRON	INTRON	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000453133.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	32	2	1.8388	2.0360750000000003	2.23335	0.0634557	0.0564473	0.184423	0.177047
chr20	32844527	32844627	7257416	0	+	0.48	(0.476,0.515]	chr20	737275	43	INTRON	INTRON	MAPRE1	ENSG00000101367.9	ENST00000375571.6	protein_coding	protein_coding	protein_coding	protein_coding	3	32	2	1.8388	2.0360750000000003	2.23335	0.0634557	0.0564473	0.184423	0.177047
chr6	145905152	145905252	3244500	0	-	0.51	(0.476,0.515]	chr6	301322	20	UTR3	UTR3:EXON_MRNA:INTRON	SHPRH	ENSG00000146414.17	ENST00000367505.6:ENST00000275233.12:ENST00000438092.6:ENST00000629427.2:ENST00000433355.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	32	2	1.8388	2.0360750000000003	2.23335	0.0634557	0.0564473	0.184423	0.177047
chr5	32424291	32424390	2599124	0	-	0.515152	(0.476,0.515]	chr5	246966	38	INTRON	INTRON	ZFR	ENSG00000056097.16	ENST00000265069.13:ENST00000505366.1:ENST00000505204.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	67	2	1.486	2.036075	2.58615	0.0430512	0.00515536	0.148082	0.0650394
chr2	61266075	61266167	1128453	0	-	0.391304	(0.378,0.408]	chr2	121277	2	CDS	CDS:EXON_MRNA:INTRON	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000472706.5:ENST00000453734.1:ENST00000484179.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	56	2	1.76032	2.036065	2.31181	0.0721577	0.00548372	0.187433	0.0671431
chr7	112460567	112460663	3381889	0	+	0.385417	(0.378,0.408]	chr7	316789	12	INTRON	INTRON	IFRD1	ENSG00000006652.15	ENST00000675578.1:ENST00000621379.4:ENST00000005558.8:ENST00000403825.8:ENST00000674915.1:ENST00000674887.1:ENST00000675041.1:ENST00000675717.1:ENST00000535603.5:ENST00000466459.5:ENST00000486688.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	56	2	1.76032	2.036065	2.31181	0.0721577	0.00548372	0.187433	0.0671431
chr5	141609113	141609213	2740090	0	-	0.26	[0,0.28]	chr5	258168	205	INTRON	INTRON	DIAPH1	ENSG00000131504.18	ENST00000647433.1:ENST00000389054.8:ENST00000518047.5:ENST00000523100.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	79	2	1.91746	2.036015	2.15457	0.0323084	0.0269306	0.135288	0.132921
chr6	53342930	53343030	3108130	0	-	0.41	(0.408,0.44]	chr6	291051	57	INTRON	INTRON	ELOVL5	ENSG00000012660.14	ENST00000370918.8:ENST00000542638.5:ENST00000304434.11:ENST00000485336.5:ENST00000465983.5:ENST00000486973.1:ENST00000370913.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	81	2	2.02591	2.03601	2.04611	0.016628	0.00531945	0.102621	0.0660391
chr5	154772978	154773078	2527174	0	+	0.34	(0.32,0.35]	chr5	241610	151	INTRON	INTRON	LARP1	ENSG00000155506.19	ENST00000687700.1:ENST00000336314.9:ENST00000690816.1:ENST00000518297.6:ENST00000517616.5:ENST00000518892.1:ENST00000521577.1:ENST00000519931.5:ENST00000524248.5:ENST00000685946.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	98	2	1.77409	2.036005	2.29792	0.0414296	0.00175304	0.146067	0.0387108
chr3	177022618	177022717	1870653	0	-	0.333333	(0.32,0.35]	chr3	187269	34	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	TBL1XR1	ENSG00000177565.18	ENST00000636864.1:ENST00000457928.7:ENST00000430069.5:ENST00000637659.1:ENST00000474363.1:ENST00000673974.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	19	199	2	1.37399	2.03586	2.69773	0.0171919	4.11332e-4	0.111368	0.0186344
chr11	2981501	2981601	4891889	0	-	0.52	(0.515,0.57]	chr11	458354	4	SS5_PROX	SS5_PROX:INTRON	NAP1L4	ENSG00000205531.13	ENST00000620138.4:ENST00000380542.9:ENST00000526115.5:ENST00000532325.6:ENST00000448187.5:ENST00000399614.6:ENST00000430811.5:ENST00000529361.5:ENST00000528968.5:ENST00000530064.5:ENST00000526842.5:ENST00000531291.5:ENST00000455338.6:ENST00000534372.1	protein_coding	protein_coding	protein_coding	protein_coding	5	45	2	1.49871	2.035845	2.57298	0.0770828	0.00506495	0.196285	0.0646039
chr3	196063023	196063107	1897349	0	-	0.261905	[0,0.28]	chr3	189925	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TFRC	ENSG00000072274.13	ENST00000420415.5:ENST00000360110.9:ENST00000392396.7:ENST00000465288.5:ENST00000477148.1:ENST00000464368.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	29	435	2	1.68276	2.035815	2.38887	0.0105401	1.35885e-4	0.0860389	0.0100405
chr14	102608819	102608919	5822695	0	+	0.41	(0.408,0.44]	chr14	552490	151	INTRON	INTRON	RCOR1	ENSG00000089902.10	ENST00000262241.7	protein_coding	protein_coding	protein_coding	protein_coding	4	45	2	1.85305	2.03581	2.21857	0.0543543	0.0209591	0.182243	0.112046
chr22	19108852	19108952	7551879	0	-	0.4	(0.378,0.408]	chr22	771903	190	INTRON	INTRON	DGCR2	ENSG00000070413.20	ENST00000537045.5:ENST00000545799.5:ENST00000263196.12:ENST00000389262.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	99	2	1.43527	2.03578	2.63629	0.0342334	0.001315	0.135511	0.0333932
chr10	73249509	73249605	4648973	0	-	0.395833	(0.378,0.408]	chr10	427711	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	MRPS16	ENSG00000182180.14	ENST00000479005.1:ENST00000372945.8:ENST00000372940.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	55	2	1.72045	2.03574	2.35103	0.0424671	0.014158	0.161763	0.0959618
chr7	123726420	123726520	3632435	0	-	0.4	(0.378,0.408]	chr7	337581	168	INTRON	INTRON	WASL	ENSG00000106299.8	ENST00000223023.5	protein_coding	protein_coding	protein_coding	protein_coding	10	109	2	1.51701	2.0357000000000003	2.55439	0.0404516	4.01276e-4	0.144865	0.0179994
chr3	25747315	25747414	1642475	0	-	0.323232	(0.32,0.35]	chr3	168658	65	INTRON	INTRON	NGLY1	ENSG00000151092.18	ENST00000280700.10:ENST00000428257.5:ENST00000675217.1:ENST00000676225.1:ENST00000493324.5:ENST00000396649.7:ENST00000675178.1:ENST00000675680.1:ENST00000308710.9:ENST00000280699.13:ENST00000674841.1:ENST00000675234.1:ENST00000463611.2:ENST00000417874.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	70	2	1.72405	2.035575	2.3471	0.0275418	0.0156413	0.137011	0.101393
chr17	82634414	82634514	6853552	0	-	0.54	(0.515,0.57]	chr17	679380	30	INTRON	INTRON	WDR45B	ENSG00000141580.16	ENST00000392325.9:ENST00000572583.5:ENST00000571835.5:ENST00000573616.5:ENST00000571817.5:ENST00000574828.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	54	2	1.8707	2.035565	2.20043	0.0523213	0.00392045	0.160182	0.0570863
chr1	113085426	113085525	188216	0	+	0.525253	(0.515,0.57]	chr1	20854	114	INTRON	INTRON	LRIG2	ENSG00000198799.12	ENST00000361127.6	protein_coding	protein_coding	protein_coding	protein_coding	5	45	2	1.811	2.0355600000000003	2.26012	0.0325989	0.0160033	0.133687	0.109464
chr10	49537265	49537364	4614920	0	-	0.555556	(0.515,0.57]	chr10	425106	39	INTRON	INTRON	ERCC6	ENSG00000225830.16	ENST00000681659.1:ENST00000681632.1:ENST00000355832.10:ENST00000679811.1:ENST00000680107.1:ENST00000447839.7:ENST00000515869.1:ENST00000679596.1:ENST00000680233.1:ENST00000462247.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	45	2	1.811	2.0355600000000003	2.26012	0.0325989	0.0160033	0.133687	0.109464
chrX	71539570	71539670	7680012	0	+	0.3	(0.28,0.32]	chrX	786397	11	INTRON	INTRON	OGT	ENSG00000147162.14	ENST00000373719.8:ENST00000488174.5:ENST00000373701.7:ENST00000498566.3:ENST00000444774.3:ENST00000455587.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	11	129	2	1.54831	2.0355600000000003	2.52281	0.0186314	0.00385251	0.117449	0.0542786
chr19	537647	537746	6991778	0	+	0.464646	(0.44,0.476]	chr19	692123	1	INTRON	INTRON	CDC34	ENSG00000099804.9	ENST00000215574.9:ENST00000586283.6:ENST00000607527.5:ENST00000606065.3:ENST00000606400.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	12	122	2	1.70687	2.035495	2.3641200000000002	0.0158463	6.33326e-4	0.101453	0.0227457
chr3	155930964	155931064	1537745	0	+	0.49	(0.476,0.515]	chr3	160158	52	INTRON	INTRON	GMPS	ENSG00000163655.16	ENST00000496455.7:ENST00000295920.7	protein_coding	protein_coding	protein_coding	protein_coding	5	52	2	1.80284	2.035365	2.26789	0.033161	0.0176567	0.145899	0.105233
chr10	17693996	17694088	4399770	0	+	0.26087	[0,0.28]	chr10	406186	3	INTRON	INTRON	STAM	ENSG00000136738.15	ENST00000377524.8:ENST00000377500.1	protein_coding	protein_coding	protein_coding	protein_coding	4	57	2	1.79953	2.03536	2.27119	0.070351	0.0377477	0.184298	0.156608
chr1	89848057	89848157	159796	0	+	0.4	(0.378,0.408]	chr1	17285	10	INTRON	INTRON	LRRC8D	ENSG00000171492.14	ENST00000525774.5:ENST00000337338.9:ENST00000394593.7:ENST00000532201.5:ENST00000414841.1:ENST00000527156.1:ENST00000441269.2	protein_coding	protein_coding	protein_coding	protein_coding	7	59	2	1.53546	2.0352449999999997	2.53503	0.0319942	0.0265688	0.134088	0.13174
chr1	244862000	244862098	673081	0	-	0.285714	(0.28,0.32]	chr1	79634	16	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	HNRNPU	ENSG00000153187.20	ENST00000649899.1:ENST00000640306.1:ENST00000444376.7:ENST00000640218.2:ENST00000639628.2:ENST00000440865.2:ENST00000638952.1:ENST00000366525.8:ENST00000639880.1:ENST00000283179.14:ENST00000638475.1:ENST00000476241.2:ENST00000640001.1:ENST00000640056.1:ENST00000638301.1:ENST00000639667.1:ENST00000640440.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	18	195	2	1.28005	2.035215	2.79038	0.0267455	6.08631e-4	0.134692	0.0226543
chr15	97874151	97874251	6268570	0	-	0.56	(0.515,0.57]	chr15	597837	3	EXON_LNCRNA	EXON_LNCRNA	LINC00923	ENSG00000251209.9	ENST00000614972.4:ENST00000671187.1:ENST00000503768.6:ENST00000503874.3:ENST00000655088.1:ENST00000664000.1:ENST00000670719.1	lncRNA	lncRNA	lncRNA	lncRNA	6	51	2	1.68552	2.03514	2.38476	0.0292028	0.0110593	0.141637	0.0873897
chr20	35713756	35713856	7336256	0	-	0.55	(0.515,0.57]	chr20	747432	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RBM39	ENSG00000131051.24	ENST00000253363.11:ENST00000639702.1:ENST00000656873.1:ENST00000463004.5:ENST00000361162.10:ENST00000461283.5:ENST00000403542.6:ENST00000338163.10:ENST00000528062.7:ENST00000429968.5:ENST00000444878.5:ENST00000665058.1:ENST00000476806.5:ENST00000492779.5:ENST00000448303.5:ENST00000615771.5:ENST00000475651.5:ENST00000490484.7:ENST00000494274.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	51	2	1.68552	2.03514	2.38476	0.0292028	0.0110593	0.141637	0.0873897
chr4	530335	530435	1907681	0	+	0.35	(0.32,0.35]	chr4	191173	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	PIGG	ENSG00000174227.16	ENST00000453061.7:ENST00000310340.9:ENST00000504346.5:ENST00000383028.8:ENST00000508562.1:ENST00000503261.5:ENST00000510235.1:ENST00000511666.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	74	2	1.73318	2.0350799999999998	2.33698	0.0462868	0.00536261	0.150684	0.0663076
chr7	139382839	139382939	3437825	0	+	0.33	(0.32,0.35]	chr7	320340	63	INTRON	INTRON	LUC7L2:FMC1-LUC7L2	ENSG00000146963.18:ENSG00000269955.2	ENST00000541170.7:ENST00000541515.3:ENST00000608368.5:ENST00000619796.4:ENST00000354926.9:ENST00000456182.5:ENST00000263545.7:ENST00000463912.5:ENST00000498518.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	74	2	1.73318	2.0350799999999998	2.33698	0.0462868	0.00536261	0.150684	0.0663076
chr7	158827142	158827242	3689790	0	-	0.28	[0,0.28]	chr7	342422	2	SS5_PROX	SS5_PROX:INTRON	ESYT2	ENSG00000117868.18	ENST00000251527.10:ENST00000275418.13:ENST00000652148.1:ENST00000483958.5:ENST00000497111.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	165	2	1.74696	2.0350799999999998	2.3232	0.0203587	0.00214175	0.110595	0.0429803
chr6	159680901	159681000	3253744	0	-	0.353535	(0.35,0.378]	chr6	302436	120	UTR3	UTR3:EXON_MRNA:INTRON	SOD2	ENSG00000112096.19	ENST00000538183.7:ENST00000546260.5:ENST00000367055.8:ENST00000367054.6:ENST00000546087.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	15	169	2	1.99946	2.034985	2.07051	0.0030263	0.00237628	0.050885	0.0438368
chr1	70224970	70225068	142627	0	+	0.387755	(0.378,0.408]	chr1	15978	18	INTRON	INTRON	SRSF11	ENSG00000116754.14	ENST00000370951.5:ENST00000463877.1:ENST00000687381.1:ENST00000370950.7:ENST00000475204.5:ENST00000370949.2:ENST00000395136.7:ENST00000473950.5:ENST00000469170.5:ENST00000486667.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	24	204	2	1.38941	2.03498	2.68055	0.0102846	3.32558e-4	0.0891064	0.016912
chr8	17997502	17997601	3708516	0	+	0.343434	(0.32,0.35]	chr8	343990	35	INTRON	INTRON	PCM1	ENSG00000078674.19	ENST00000325083.13:ENST00000519253.5:ENST00000524226.5:ENST00000522275.5	protein_coding	protein_coding	protein_coding	protein_coding	6	74	2	1.96288	2.034915	2.10695	0.0239991	0.0127483	0.119664	0.0987441
chr14	31016437	31016537	5857774	0	-	0.36	(0.35,0.378]	chr14	556512	13	INTRON	INTRON	STRN3	ENSG00000196792.12	ENST00000355683.9:ENST00000357479.10:ENST00000555358.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	57	2	1.97646	2.034885	2.09331	0.0315717	0.0193942	0.13151	0.119831
chr17	39201323	39201422	6606944	0	+	0.363636	(0.35,0.378]	chr17	643235	1	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	RPL19	ENSG00000108298.12	ENST00000678147.1:ENST00000225430.9:ENST00000678609.1:ENST00000679038.1:ENST00000579374.5:ENST00000678012.1:ENST00000577741.2:ENST00000579260.5:ENST00000582193.5:ENST00000678791.1:ENST00000678573.1:ENST00000585199.2:ENST00000678189.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	23	262	2	2.01667	2.03486	2.05305	0.00173249	0.00105144	0.0385028	0.029592
chr18	26085328	26085422	6959688	0	-	0.351064	(0.35,0.378]	chr18	688504	8	INTRON	INTRON	SS18	ENSG00000141380.14	ENST00000415083.7:ENST00000542420.6:ENST00000579640.5:ENST00000269138.9:ENST00000269137.11:ENST00000585121.5:ENST00000539244.6:ENST00000585241.5:ENST00000578954.5:ENST00000579061.5:ENST00000577636.5:ENST00000584083.5:ENST00000578700.5:ENST00000582792.5:ENST00000581021.5:ENST00000577572.5:ENST00000582448.5:ENST00000581570.5:ENST00000577751.5:ENST00000580751.5:ENST00000580642.2:ENST00000578595.1:ENST00000583595.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	57	2	1.92704	2.03484	2.14264	0.0274795	0.0228255	0.125469	0.123904
chr2	183019768	183019868	1285843	0	-	0.4	(0.378,0.408]	chr2	135424	161	INTRON	INTRON	NCKAP1	ENSG00000061676.15	ENST00000361354.9:ENST00000360982.2	protein_coding	protein_coding	protein_coding	protein_coding	5	48	2	1.76	2.034805	2.30961	0.055088	0.023484	0.165463	0.128531
chr1	51447545	51447605	453628	0	-	0.45	(0.44,0.476]	chr1	54389	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	EPS15	ENSG00000085832.17	ENST00000371733.8:ENST00000371730.6	protein_coding	protein_coding	protein_coding	protein_coding	10	102	2	1.98356	2.0348	2.08604	0.00757232	0.00407817	0.0749063	0.0580928
chr3	20166795	20166895	1640666	0	-	0.36	(0.35,0.378]	chr3	168332	52	INTRON	INTRON	SGO1	ENSG00000129810.15	ENST00000306698.6:ENST00000419233.6:ENST00000263753.8:ENST00000425061.5:ENST00000443724.5:ENST00000421451.5:ENST00000452020.5	protein_coding	protein_coding	protein_coding	protein_coding	6	66	2	1.54563	2.03479	2.52395	0.046845	0.00824736	0.167716	0.0773378
chr4	82372918	82373018	2177529	0	-	0.49	(0.476,0.515]	chr4	214153	4	SS5_PROX	SS5_PROX:INTRON	HNRNPD	ENSG00000138668.19	ENST00000313899.12:ENST00000353341.8:ENST00000352301.8:ENST00000513584.1:ENST00000509263.5:ENST00000507010.5:ENST00000515432.1:ENST00000503822.1:ENST00000509107.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	91	2	1.97876	2.03471	2.09066	0.00772252	0.00655939	0.0756858	0.0735539
chr1	65261114	65261213	135602	0	+	0.464646	(0.44,0.476]	chr1	15341	61	INTRON	INTRON	DNAJC6	ENSG00000116675.16	ENST00000463018.5:ENST00000494710.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	19	187	2	1.94013	2.03468	2.12923	0.00148618	0.00142967	0.035	0.0347139
chr1	61107571	61107671	127643	0	+	0.27	[0,0.28]	chr1	14770	190	EXON_MRNA	EXON_MRNA:INTRON	NFIA	ENSG00000162599.17	ENST00000371191.5:ENST00000664495.1:ENST00000476646.5:ENST00000407417.7:ENST00000479364.1:ENST00000371189.8:ENST00000670151.1:ENST00000664149.1:ENST00000662015.1:ENST00000403491.8:ENST00000371187.7:ENST00000485903.6:ENST00000371185.6:ENST00000371184.6:ENST00000603233.2:ENST00000496712.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	107	2	1.82783	2.034595	2.24136	0.0410712	0.00497825	0.1451	0.0646039
chr6	157887070	157887170	3016406	0	+	0.37	(0.35,0.378]	chr6	281379	102	INTRON	INTRON	SNX9	ENSG00000130340.17	ENST00000680863.1:ENST00000679814.1:ENST00000680464.1:ENST00000681186.1:ENST00000679732.1:ENST00000681183.1:ENST00000681534.1:ENST00000681651.1:ENST00000680089.1:ENST00000680078.1:ENST00000680974.1:ENST00000680095.1:ENST00000680015.1:ENST00000681138.1:ENST00000392185.8:ENST00000679790.1:ENST00000680495.1:ENST00000679691.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	79	2	1.90041	2.0345050000000002	2.1686	0.0145936	0.0116706	0.105992	0.0891208
chr7	119745116	119745215	3628789	0	-	0.353535	(0.35,0.378]	chr7	337319	398	INTRON	INTRON	LINC02476	ENSG00000225546.6	ENST00000660268.1:ENST00000431071.5	lncRNA	lncRNA	lncRNA	lncRNA	4	48	2	1.9755	2.034405	2.09331	0.0398617	0.0315717	0.161534	0.13151
chr20	41035044	41035144	7273568	0	+	0.55	(0.515,0.57]	chr20	739216	52	INTRON	INTRON	TOP1	ENSG00000198900.7	ENST00000361337.3:ENST00000681113.1:ENST00000681058.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	116	2	1.57902	2.034365	2.48971	0.0229035	1.55412e-4	0.118056	0.0106835
chr16	8004048	8004148	6440549	0	-	0.37	(0.35,0.378]	chr16	620345	258	INTRON	INTRON	ENSG00000260289	ENSG00000260289.2	ENST00000670665.1:ENST00000654046.1:ENST00000567103.2	lncRNA	lncRNA	lncRNA	lncRNA	9	98	2	1.42644	2.034325	2.64221	0.0390715	0.00186959	0.161228	0.0390476
chr19	49163469	49163568	7089089	0	+	0.464646	(0.44,0.476]	chr19	709755	37	INTRON	INTRON	TRPM4	ENSG00000130529.16	ENST00000598691.5:ENST00000598697.5:ENST00000252826.10:ENST00000595519.5:ENST00000427978.6:ENST00000598502.5:ENST00000596338.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	44	2	1.93084	2.034315	2.13779	0.0443175	0.0264596	0.162302	0.122506
chr1	53831598	53831696	460544	0	-	0.469388	(0.44,0.476]	chr1	55439	31	INTRON	INTRON	NDC1	ENSG00000058804.12	ENST00000371429.4:ENST00000480952.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	60	2	1.5191	2.0342700000000002	2.54944	0.0526241	0.00591346	0.160983	0.0694038
chr4	82872967	82873062	2179914	0	-	0.347368	(0.32,0.35]	chr4	214367	5	INTRON	INTRON	SEC31A	ENSG00000138674.17	ENST00000395310.7:ENST00000513858.5:ENST00000348405.8:ENST00000448323.5:ENST00000311785.11:ENST00000509142.5:ENST00000443462.6:ENST00000500777.6:ENST00000505472.5:ENST00000355196.6:ENST00000508502.5:ENST00000505984.5:ENST00000508479.5:ENST00000436790.6:ENST00000503058.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	70	2	1.32435	2.03425	2.74415	0.0459022	0.0198267	0.164984	0.109608
chr17	44142445	44142545	6615473	0	+	0.5	(0.476,0.515]	chr17	645072	3	SS5_PROX	SS5_PROX:INTRON	HROB	ENSG00000125319.15	ENST00000319977.8:ENST00000585683.6:ENST00000245382.6	protein_coding	protein_coding	protein_coding	protein_coding	8	73	2	1.34326	2.034165	2.72507	0.0529391	0.0029369	0.161923	0.0496505
chr1	203012695	203012794	295304	0	+	0.434343	(0.408,0.44]	chr1	33952	35	INTRON	INTRON	TMEM183A	ENSG00000163444.12	ENST00000367242.4:ENST00000543891.5:ENST00000468449.5:ENST00000463015.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	61	2	1.49523	2.03409	2.57295	0.0534846	0.00640423	0.180041	0.0694534
chr17	7312004	7312096	6552847	0	+	0.652174	(0.57,1]	chr17	636359	3	UTR3	UTR3:EXON_MRNA	EIF5A	ENSG00000132507.18	ENST00000336452.11:ENST00000576930.5:ENST00000573542.5:ENST00000336458.13:ENST00000419711.6:ENST00000571955.5:ENST00000416016.2	protein_coding	protein_coding	protein_coding	protein_coding	15	76	2	1.86698	2.034055	2.20113	0.00242857	0.00116436	0.0444645	0.0314528
chr5	77764006	77764106	2647111	0	-	0.33	(0.32,0.35]	chr5	251578	488	INTRON	INTRON	TBCA	ENSG00000171530.15	ENST00000380377.9:ENST00000306388.10:ENST00000520361.5:ENST00000651106.1:ENST00000518338.6:ENST00000522370.1:ENST00000520039.1	protein_coding	protein_coding	protein_coding	protein_coding	7	78	2	1.72098	2.03404	2.3471	0.0192903	0.0156413	0.119831	0.101393
chr11	12878388	12878488	4741626	0	+	0.42	(0.408,0.44]	chr11	439092	1	SS3_PROX	SS3_PROX:INTRON	TEAD1	ENSG00000187079.20	ENST00000527636.7:ENST00000334310.10:ENST00000527575.6	protein_coding	protein_coding	protein_coding	protein_coding	6	64	2	1.9831	2.03398	2.08486	0.018491	0.0145898	0.116694	0.0981689
chr2	144463787	144463884	1241238	0	-	0.412371	(0.408,0.44]	chr2	131710	16	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	ZEB2	ENSG00000169554.23	ENST00000636471.1:ENST00000627532.3:ENST00000638128.1:ENST00000637304.1:ENST00000636179.1:ENST00000636820.1:ENST00000419938.5:ENST00000409487.7:ENST00000636732.2:ENST00000636026.2:ENST00000675069.1:ENST00000689298.1:ENST00000539609.7:ENST00000558170.6:ENST00000303660.8:ENST00000427902.5:ENST00000637267.2:ENST00000392861.6:ENST00000431672.4:ENST00000409211.5:ENST00000465308.5:ENST00000434448.5:ENST00000472146.5:ENST00000461784.3:ENST00000476394.5:ENST00000637591.2:ENST00000479735.1:ENST00000453352.5:ENST00000435831.5:ENST00000444559.5:ENST00000630572.2:ENST00000628473.1:ENST00000484313.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	64	2	1.9831	2.03398	2.08486	0.018491	0.0145898	0.116694	0.0981689
chr18	12986766	12986861	6876557	0	+	0.284211	(0.28,0.32]	chr18	681329	17	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	SEH1L	ENSG00000085415.16	ENST00000262124.15:ENST00000399892.7:ENST00000590843.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	112	2	1.7825	2.033705	2.28491	0.0119176	0.0091216	0.0962115	0.0811564
chr16	81465204	81465304	6405201	0	+	0.4	(0.378,0.408]	chr16	615026	193	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8	protein_coding	protein_coding	protein_coding	protein_coding	7	69	2	1.58985	2.033685	2.47752	0.0290335	0.0092831	0.141186	0.0817766
chr11	9575079	9575178	4730802	0	+	0.535354	(0.515,0.57]	chr11	438081	5	UTR5	UTR5:EXON_MRNA:INTRON	WEE1	ENSG00000166483.12	ENST00000680141.1:ENST00000450114.7:ENST00000299613.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	13	104	2	1.44512	2.03368	2.62224	0.0193997	5.82626e-4	0.119831	0.0223753
chr7	12375920	12376017	3485150	0	-	0.350515	(0.35,0.378]	chr7	325929	3	INTRON	INTRON	VWDE	ENSG00000146530.15	ENST00000275358.8:ENST00000452576.6:ENST00000521169.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	96	2	1.60176	2.03367	2.46558	0.0213692	0.00387127	0.123719	0.0543569
chr17	56898700	56898787	6798987	0	-	0.390805	(0.378,0.408]	chr17	671254	2	SS5_PROX	SS5_PROX:INTRON	TRIM25	ENSG00000121060.19	ENST00000648772.1:ENST00000682766.1:ENST00000316881.9:ENST00000537230.3:ENST00000572021.6:ENST00000570473.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	71	2	1.95534	2.03364	2.11194	0.0292534	0.00731058	0.128055	0.076234
chr19	908105	908204	7110887	0	-	0.535354	(0.515,0.57]	chr19	714174	51	INTRON	INTRON	R3HDM4	ENSG00000198858.10	ENST00000589428.5:ENST00000361574.10:ENST00000587975.2:ENST00000590454.2:ENST00000589445.1:ENST00000626716.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	80	2	1.62864	2.03362	2.4386	0.0137628	0.00326739	0.10247	0.0508595
chr9	37182514	37182614	4118280	0	+	0.45	(0.44,0.476]	chr9	375384	224	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000322831.6:ENST00000461038.5:ENST00000488607.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	80	2	1.56617	2.0336100000000004	2.50105	0.0338203	0.00240161	0.134476	0.0452061
chr5	53921721	53921821	2617021	0	-	0.43	(0.408,0.44]	chr5	248835	97	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	44	2	2.00768	2.033575	2.05947	0.035843	0.0333232	0.152216	0.134145
chr6	89768680	89768779	3161511	0	-	0.414141	(0.408,0.44]	chr6	294808	58	INTRON	INTRON	MDN1	ENSG00000112159.12	ENST00000369393.8:ENST00000629399.2:ENST00000439638.1	protein_coding	protein_coding	protein_coding	protein_coding	4	44	2	2.00768	2.033575	2.05947	0.035843	0.0333232	0.152216	0.134145
chrX	77901443	77901543	7684962	0	+	0.41	(0.408,0.44]	chrX	786808	3	SS3_PROX	SS3_PROX:INTRON	COX7B	ENSG00000131174.7	ENST00000373335.4:ENST00000475465.1:ENST00000650309.2:ENST00000647835.1	protein_coding	protein_coding	protein_coding	protein_coding	4	44	2	2.00768	2.033575	2.05947	0.035843	0.0333232	0.152216	0.134145
chr1	220046042	220046142	639189	0	-	0.58	(0.57,1]	chr1	75334	3	SS5_PROX	SS5_PROX:INTRON	EPRS1	ENSG00000136628.18	ENST00000366923.8:ENST00000609181.5:ENST00000477030.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	36	2	1.9324	2.0334250000000003	2.13445	0.0241482	0.00747247	0.12011	0.0772645
chr1	207693052	207693152	304431	0	+	0.29	(0.28,0.32]	chr1	35014	87	INTRON	INTRON	CR1L	ENSG00000197721.17	ENST00000508064.7:ENST00000530905.1:ENST00000294997.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	86	2	1.38068	2.03335	2.68602	0.0590236	0.0055712	0.189982	0.0649112
chr16	10402189	10402289	6286439	0	+	0.35	(0.32,0.35]	chr16	601961	93	INTRON	INTRON	ATF7IP2	ENSG00000166669.14	ENST00000564797.5:ENST00000396559.5:ENST00000396560.6:ENST00000562527.5:ENST00000561932.5:ENST00000543967.5:ENST00000562102.6:ENST00000535850.5:ENST00000569900.5:ENST00000569939.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	61	2	1.93031	2.033255	2.1362	0.0291083	0.0231421	0.128029	0.126939
chr20	37229769	37229869	7266650	0	+	0.37	(0.35,0.378]	chr20	738458	4	SS3_PROX	SS3_PROX:INTRON	RPN2	ENSG00000118705.17	ENST00000373622.9:ENST00000237530.11:ENST00000437329.5:ENST00000456400.1	protein_coding	protein_coding	protein_coding	protein_coding	5	57	2	2.02424	2.03324	2.04224	0.0363073	0.0164934	0.138959	0.110301
chr3	194469238	194469337	1891023	0	-	0.444444	(0.44,0.476]	chr3	189246	11	INTRON	INTRON	ATP13A3	ENSG00000133657.17	ENST00000687055.1:ENST00000645538.1:ENST00000645319.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	52	2	1.92837	2.03308	2.13779	0.0264596	0.0222222	0.124303	0.122506
chr11	2990992	2991092	4891988	0	-	0.52	(0.515,0.57]	chr11	458381	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	NAP1L4	ENSG00000205531.13	ENST00000620138.4:ENST00000380542.9:ENST00000526115.5:ENST00000532325.6:ENST00000448187.5:ENST00000399614.6:ENST00000430811.5:ENST00000529361.5:ENST00000528968.5:ENST00000526842.5:ENST00000531291.5:ENST00000534372.1	protein_coding	protein_coding	protein_coding	protein_coding	6	51	2	1.62814	2.032985	2.43783	0.035203	0.00916404	0.150193	0.0812949
chr2	53953475	53953575	1120403	0	-	0.27	[0,0.28]	chr2	120102	38	INTRON	INTRON	PSME4	ENSG00000068878.15	ENST00000404125.6:ENST00000389993.7:ENST00000481518.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	101	2	2.00464	2.0329800000000002	2.06132	0.0408268	0.00797197	0.1451	0.0798772
chr10	5769114	5769206	4544471	0	-	0.304348	(0.28,0.32]	chr10	419765	9	EXON_LNCRNA	EXON_LNCRNA:INTRON	GDI2	ENSG00000057608.17	ENST00000380191.9:ENST00000479928.1:ENST00000447751.5:ENST00000380181.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	93	2	1.83303	2.0329699999999997	2.23291	0.0370023	0.00444008	0.139194	0.0610799
chr1	90995662	90995762	502264	0	-	0.3	(0.28,0.32]	chr1	59504	129	INTRON	INTRON	ZNF644	ENSG00000122482.22	ENST00000370440.5:ENST00000337393.10:ENST00000347275.9:ENST00000361321.5:ENST00000467231.5:ENST00000498303.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	64	2	1.49395	2.03295	2.57195	0.0423482	0.0331711	0.161744	0.133994
chr1	172538275	172538374	254737	0	+	0.313131	(0.28,0.32]	chr1	30357	44	INTRON	INTRON	SUCO	ENSG00000094975.14	ENST00000367723.8:ENST00000608151.5:ENST00000616058.4:ENST00000263688.4:ENST00000610051.5:ENST00000608566.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	49	2	1.61031	2.03288	2.45545	0.0600513	0.0438092	0.190658	0.14901
chr1	28018136	28018236	408295	0	-	0.36	(0.35,0.378]	chr1	49182	5	INTRON	INTRON	EYA3	ENSG00000158161.16	ENST00000373871.8:ENST00000540618.5:ENST00000436342.6:ENST00000373864.5:ENST00000373863.3:ENST00000471498.5:ENST00000468665.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	35	2	1.90405	2.032875	2.1617	0.0771502	0.0482651	0.196285	0.171852
chr3	47834409	47834508	1420293	0	+	0.323232	(0.32,0.35]	chr3	149238	34	INTRON	INTRON	DHX30	ENSG00000132153.15	ENST00000395745.6:ENST00000445061.6:ENST00000441384.5:ENST00000348968.8:ENST00000446256.6:ENST00000619982.4:ENST00000457607.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	141	2	1.63792	2.032845	2.42777	0.0188008	9.29501e-4	0.108861	0.0278746
chr2	15521346	15521446	1072762	0	-	0.34	(0.32,0.35]	chr2	114441	96	INTRON	INTRON	NBAS	ENSG00000151779.13	ENST00000281513.10	protein_coding	protein_coding	protein_coding	protein_coding	6	71	2	2.02327	2.03282	2.04237	0.0375542	0.00956045	0.140222	0.0863913
chr8	66676902	66677002	3774985	0	+	0.34	(0.32,0.35]	chr8	350078	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	C8orf44	ENSG00000288596.2	ENST00000521113.1:ENST00000661636.1:ENST00000521889.5:ENST00000390159.3	lncRNA	lncRNA	lncRNA	lncRNA	5	62	2	1.81388	2.0328049999999998	2.25173	0.0371014	0.0180122	0.139201	0.114436
chr1	158633647	158633746	570072	0	-	0.323232	(0.32,0.35]	chr1	68772	56	INTRON	INTRON	SPTA1	ENSG00000163554.15	ENST00000643759.2:ENST00000461624.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	52	2	1.88468	2.0328	2.18092	0.0515071	0.0256608	0.176696	0.120491
chr15	55374550	55374650	6181564	0	-	0.27	[0,0.28]	chr15	589236	3	SS3_PROX	SS3_PROX:INTRON	CCPG1	ENSG00000260916.8	ENST00000442196.8:ENST00000310958.10:ENST00000425574.7:ENST00000568808.5:ENST00000569205.5:ENST00000563171.5:ENST00000570272.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	56	2	1.62313	2.032775	2.44242	0.0605286	0.0491024	0.191883	0.155269
chr9	128973847	128973945	4208125	0	+	0.255102	[0,0.28]	chr9	385308	2	INTRON	INTRON	NUP188	ENSG00000095319.14	ENST00000372577.2	protein_coding	protein_coding	protein_coding	protein_coding	4	56	2	1.62313	2.032775	2.44242	0.0605286	0.0491024	0.191883	0.155269
chr9	92287204	92287301	4287280	0	-	0.309278	(0.28,0.32]	chr9	394252	7	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	IARS1	ENSG00000196305.19	ENST00000375643.7:ENST00000443024.7:ENST00000447699.7:ENST00000683537.1:ENST00000684726.1:ENST00000683192.1:ENST00000683565.1:ENST00000682756.1:ENST00000684542.1:ENST00000683793.1:ENST00000683817.1:ENST00000682141.1:ENST00000682893.1:ENST00000684557.1:ENST00000498025.2:ENST00000682156.1:ENST00000627121.3:ENST00000683469.1:ENST00000683495.1:ENST00000682578.1:ENST00000682533.1:ENST00000472894.2:ENST00000684757.1:ENST00000684445.1:ENST00000683376.1:ENST00000683679.1:ENST00000683119.1:ENST00000490438.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	14	138	2	1.49787	2.03276	2.56765	0.0133674	0.00835086	0.100831	0.0774402
chr1	108953674	108953771	519079	0	-	0.505155	(0.476,0.515]	chr1	60922	19	INTRON	INTRON	CLCC1	ENSG00000121940.17	ENST00000690509.1:ENST00000687328.1:ENST00000685014.1:ENST00000685540.1:ENST00000686576.1:ENST00000688070.1:ENST00000691513.1:ENST00000686821.1:ENST00000692511.1:ENST00000689479.1:ENST00000687646.1:ENST00000687998.1:ENST00000687226.1:ENST00000693336.1:ENST00000689991.1:ENST00000687591.1:ENST00000691777.1:ENST00000690756.1:ENST00000688778.1:ENST00000685104.1:ENST00000689103.1:ENST00000687734.1:ENST00000686434.1:ENST00000685497.1:ENST00000691342.1:ENST00000686776.1:ENST00000692342.1:ENST00000689351.1:ENST00000692584.1:ENST00000692775.1:ENST00000687134.1:ENST00000675018.1:ENST00000690781.1:ENST00000691556.1:ENST00000689189.1:ENST00000687099.1:ENST00000685791.1:ENST00000687865.1:ENST00000687449.1:ENST00000688285.1:ENST00000686817.1:ENST00000369968.7:ENST00000674992.1:ENST00000675001.1:ENST00000369969.7:ENST00000356970.6:ENST00000688610.1:ENST00000675128.1:ENST00000693089.1:ENST00000675571.1:ENST00000675650.1:ENST00000369970.8:ENST00000674561.2:ENST00000675654.1:ENST00000675790.1:ENST00000675584.1:ENST00000692795.1:ENST00000691731.1:ENST00000689359.1:ENST00000676392.2:ENST00000676391.2:ENST00000676454.1:ENST00000674849.1:ENST00000675956.1:ENST00000302500.5:ENST00000675508.1:ENST00000688168.1:ENST00000693673.1:ENST00000692404.1:ENST00000686078.1:ENST00000690874.1:ENST00000692732.1:ENST00000685628.1:ENST00000676306.1:ENST00000676059.2:ENST00000674527.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	39	2	1.74317	2.0327349999999997	2.3223	0.0519312	0.0396373	0.161534	0.159306
chr19	10672133	10672231	7013397	0	+	0.418367	(0.408,0.44]	chr19	696780	2	INTRON	INTRON	ILF3	ENSG00000129351.17	ENST00000449870.5:ENST00000587928.5:ENST00000407004.7:ENST00000589998.5:ENST00000589600.5:ENST00000590009.5:ENST00000587505.5:ENST00000589052.5:ENST00000250241.12:ENST00000590261.5:ENST00000588657.5:ENST00000592763.5:ENST00000587840.5:ENST00000589416.5:ENST00000585835.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	45	2	1.55035	2.032635	2.51492	0.0455214	0.0329839	0.164236	0.133816
chr19	16090250	16090349	7026116	0	+	0.414141	(0.408,0.44]	chr19	699207	7	INTRON	INTRON	TPM4	ENSG00000167460.17	ENST00000646974.2:ENST00000586499.6:ENST00000647464.2:ENST00000668959.1:ENST00000590180.3:ENST00000655004.1:ENST00000642789.1:ENST00000653979.1:ENST00000645471.1:ENST00000659595.1:ENST00000647037.1:ENST00000587201.6:ENST00000643579.2:ENST00000586193.6:ENST00000643494.1:ENST00000670382.1:ENST00000300933.9:ENST00000646575.1:ENST00000586833.7:ENST00000642221.1:ENST00000658224.1:ENST00000344824.11:ENST00000588410.2:ENST00000657915.1:ENST00000588483.2:ENST00000664983.1:ENST00000663894.1:ENST00000588032.6:ENST00000653961.1:ENST00000591645.3:ENST00000658489.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	45	2	1.55035	2.032635	2.51492	0.0455214	0.0329839	0.164236	0.133816
chr1	212053304	212053404	307517	0	+	0.45	(0.44,0.476]	chr1	35478	55	INTRON	INTRON	DTL	ENSG00000143476.18	ENST00000542077.5:ENST00000366991.5:ENST00000475419.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	33	2	1.77101	2.03263	2.29425	0.0693975	0.0518406	0.184298	0.176696
chr14	101862170	101862270	5819517	0	+	0.47	(0.44,0.476]	chr14	551879	49	INTRON	INTRON	PPP2R5C	ENSG00000078304.20	ENST00000694906.1:ENST00000422945.6:ENST00000328724.9:ENST00000350249.7:ENST00000557621.5:ENST00000556307.5:ENST00000553730.5:ENST00000334743.9:ENST00000445439.7:ENST00000557095.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	33	2	1.77101	2.03263	2.29425	0.0693975	0.0518406	0.184298	0.176696
chr8	129518883	129518983	4060471	0	-	0.46	(0.44,0.476]	chr8	369648	83	INTRON	INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1:ENST00000676273.1:ENST00000667643.1:ENST00000668791.1:ENST00000663716.1:ENST00000663572.1:ENST00000676148.1:ENST00000667962.1:ENST00000674877.1:ENST00000675316.1:ENST00000674656.1:ENST00000446592.7:ENST00000667341.1:ENST00000675186.1:ENST00000652971.1:ENST00000661447.1:ENST00000674863.1:ENST00000675498.1:ENST00000675527.1:ENST00000676108.1:ENST00000657647.1:ENST00000675589.1:ENST00000675913.1:ENST00000675109.1:ENST00000671632.1:ENST00000671311.1:ENST00000676099.1:ENST00000660652.1:ENST00000675522.1:ENST00000675183.1:ENST00000658861.1:ENST00000663991.1:ENST00000675044.1:ENST00000675435.1:ENST00000674639.1:ENST00000676069.1:ENST00000675532.1:ENST00000674762.1:ENST00000523151.6:ENST00000675948.1:ENST00000665364.1:ENST00000657251.1:ENST00000675166.1:ENST00000674883.1:ENST00000675867.1:ENST00000674580.1:ENST00000675393.1:ENST00000520048.1:ENST00000674906.1:ENST00000676030.1:ENST00000670588.1:ENST00000675072.1:ENST00000664936.1:ENST00000652914.1:ENST00000657069.1	lncRNA	lncRNA	lncRNA	lncRNA	3	33	2	1.77101	2.03263	2.29425	0.0693975	0.0518406	0.184298	0.176696
chr9	6416054	6416153	4098840	0	+	0.474747	(0.44,0.476]	chr9	373528	15	INTRON	INTRON	UHRF2	ENSG00000147854.17	ENST00000468435.6:ENST00000469298.5:ENST00000276893.10:ENST00000381373.3:ENST00000481049.5:ENST00000461236.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	33	2	1.77101	2.03263	2.29425	0.0693975	0.0518406	0.184298	0.176696
chr22	31685426	31685526	7579027	0	-	0.34	(0.32,0.35]	chr22	775624	42	UTR3	UTR3:EXON_MRNA:INTRON	PRR14L	ENSG00000183530.14	ENST00000330495.8:ENST00000327423.11:ENST00000432485.1:ENST00000431684.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	85	2	1.56912	2.03261	2.4961	0.0247709	0.00967886	0.131869	0.0828038
chr1	52871442	52871541	105200	0	+	0.343434	(0.32,0.35]	chr1	13760	33	INTRON	INTRON	ZYG11A	ENSG00000203995.10	ENST00000371532.5:ENST00000612017.4:ENST00000371528.2	protein_coding	protein_coding	protein_coding	protein_coding	15	178	2	1.90648	2.032495	2.15851	0.00548799	0.00151568	0.0648867	0.0360297
chr20	50087742	50087841	7353699	0	-	0.393939	(0.378,0.408]	chr20	749863	31	INTRON	INTRON	UBE2V1	ENSG00000244687.13	ENST00000340309.7:ENST00000371677.7:ENST00000415862.6:ENST00000557021.5:ENST00000617119.4:ENST00000625172.3:ENST00000396059.7:ENST00000371674.8:ENST00000371657.9:ENST00000483534.5:ENST00000492371.6:ENST00000486653.5:ENST00000490555.1:ENST00000493090.5:ENST00000467839.5:ENST00000472923.5:ENST00000432266.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	62	2	1.80483	2.03246	2.26009	0.0201276	0.0188651	0.121243	0.108861
chr1	40712586	40712686	82570	0	+	0.3	(0.28,0.32]	chr1	10716	1	SS3_ADJ	SS3_ADJ:SS3_PROX:SS5_PROX:INTRON	NFYC	ENSG00000066136.21	ENST00000467203.5:ENST00000424419.6:ENST00000427410.6:ENST00000447388.8:ENST00000425457.6:ENST00000453631.5:ENST00000456393.6:ENST00000372654.5:ENST00000534399.5:ENST00000372653.5:ENST00000372669.8:ENST00000372652.5:ENST00000372651.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	104	2	1.63236	2.03233	2.4323	0.0273014	0.00540168	0.136494	0.0644179
chr10	124406432	124406524	4710708	0	-	0.369565	(0.35,0.378]	chr10	434711	5	INTRON	INTRON	OAT	ENSG00000065154.12	ENST00000539214.5:ENST00000368845.6:ENST00000467675.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	73	2	1.78333	2.03229	2.28125	0.0182271	0.0148511	0.107842	0.106937
chr9	120782215	120782314	4335352	0	-	0.525253	(0.515,0.57]	chr9	398253	33	INTRON	INTRON	FBXW2	ENSG00000119402.18	ENST00000684405.1:ENST00000684001.1:ENST00000684047.1:ENST00000608872.6:ENST00000453291.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	57	2	1.38719	2.03226	2.67733	0.0540435	0.00366712	0.181713	0.0535094
chr19	11092407	11092506	7016842	0	+	0.40404	(0.378,0.408]	chr19	697422	11	INTRON	INTRON	LDLR	ENSG00000130164.14	ENST00000557933.5:ENST00000558518.6:ENST00000545707.5:ENST00000535915.5:ENST00000455727.6:ENST00000557958.1:ENST00000560502.5:ENST00000558013.5:ENST00000252444.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	17	177	2	1.84951	2.03223	2.21495	0.00481897	6.83156e-4	0.060277	0.0237957
chr7	124896171	124896270	3633435	0	-	0.272727	[0,0.28]	chr7	337711	30	INTRON	INTRON	POT1	ENSG00000128513.16	ENST00000430927.6:ENST00000357628.8:ENST00000393329.5:ENST00000653274.1:ENST00000661898.1:ENST00000664330.1:ENST00000657892.1:ENST00000662531.1:ENST00000653241.1:ENST00000653892.1:ENST00000664366.1:ENST00000655761.1:ENST00000668382.1:ENST00000654766.1:ENST00000657333.1:ENST00000653819.1:ENST00000609106.5:ENST00000607932.5:ENST00000608057.5:ENST00000446993.6:ENST00000429326.6:ENST00000609702.5:ENST00000669195.1:ENST00000608437.5:ENST00000608261.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	65	2	1.56918	2.032225	2.49527	0.0481076	0.0436497	0.171525	0.14882
chr2	54980425	54980525	1120701	0	-	0.26	[0,0.28]	chr2	120130	53	INTRON	INTRON	RTN4	ENSG00000115310.19	ENST00000394609.6:ENST00000404909.5:ENST00000394611.6:ENST00000317610.11:ENST00000357732.8:ENST00000337526.11:ENST00000357376.7:ENST00000405240.5:ENST00000486085.5:ENST00000438462.1	protein_coding	protein_coding	protein_coding	protein_coding	8	120	2	1.85666	2.032195	2.20773	0.0660997	0.002385	0.181924	0.0449918
chr11	18402246	18402339	4749776	0	+	0.354839	(0.35,0.378]	chr11	439745	9	INTRON	INTRON	LDHA	ENSG00000134333.14	ENST00000543445.5:ENST00000396222.6:ENST00000430553.6:ENST00000422447.8:ENST00000545215.5:ENST00000541097.5:ENST00000536528.5:ENST00000543695.5:ENST00000227157.8:ENST00000540430.5:ENST00000379412.9:ENST00000542179.1:ENST00000486690.6:ENST00000537296.5:ENST00000460405.5:ENST00000375710.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	70	2	1.75561	2.0321	2.30859	0.0739399	0.00276702	0.190914	0.0486894
chrX	13357185	13357285	7622528	0	+	0.5	(0.476,0.515]	chrX	780353	155	INTRON	INTRON	LINC01203	ENSG00000226985.7	ENST00000669963.1:ENST00000661545.1:ENST00000659526.1:ENST00000656410.1:ENST00000661104.1:ENST00000456091.2:ENST00000655502.1:ENST00000671651.1:ENST00000656979.1:ENST00000656271.1:ENST00000661629.1:ENST00000661464.1:ENST00000668192.1:ENST00000665887.1:ENST00000659191.1:ENST00000667868.1:ENST00000653729.1:ENST00000656111.1	lncRNA	lncRNA	lncRNA	lncRNA	6	63	2	1.93099	2.032015	2.13304	0.024866	0.0140312	0.132101	0.0959618
chr17	18244197	18244294	6568301	0	+	0.453608	(0.44,0.476]	chr17	638553	4	UTR3	UTR3:EXON_MRNA	LLGL1	ENSG00000131899.12	ENST00000316843.9:ENST00000479155.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	88	2	1.65297	2.031955	2.41094	0.0331814	0.00205841	0.145918	0.0409869
chr4	68321958	68322055	2154594	0	-	0.391753	(0.378,0.408]	chr4	212233	14	INTRON	INTRON	YTHDC1	ENSG00000083896.13	ENST00000344157.9:ENST00000355665.7:ENST00000579690.5	protein_coding	protein_coding	protein_coding	protein_coding	7	75	2	1.90812	2.03193	2.15574	0.0264295	0.00519611	0.122506	0.0654762
chr5	127553697	127553796	2480164	0	+	0.252525	[0,0.28]	chr5	236818	19	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	PRRC1	ENSG00000164244.21	ENST00000296666.13:ENST00000512635.2	protein_coding	protein_coding	protein_coding	protein_coding	11	153	2	1.93144	2.0319	2.13236	0.017376	0.0046007	0.104294	0.0624872
chr10	68761891	68761991	4442695	0	+	0.33	(0.32,0.35]	chr10	409684	3	INTRON	INTRON	CCAR1	ENSG00000060339.14	ENST00000630771.2:ENST00000543719.5:ENST00000541012.5:ENST00000265872.11:ENST00000539539.5:ENST00000543229.5:ENST00000536012.5:ENST00000543225.5:ENST00000540210.5:ENST00000479143.2:ENST00000543706.1:ENST00000539250.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	61	2	2.02133	2.03185	2.04237	0.0375542	0.017146	0.140222	0.111072
chr4	39757627	39757726	1953589	0	+	0.333333	(0.32,0.35]	chr4	195648	15	INTRON	INTRON	UBE2K	ENSG00000078140.14	ENST00000510934.5:ENST00000261427.10:ENST00000438068.6:ENST00000513231.5:ENST00000503368.5:ENST00000445950.2:ENST00000510719.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	61	2	2.02133	2.03185	2.04237	0.0375542	0.017146	0.140222	0.111072
chr12	54234115	54234214	5330429	0	-	0.373737	(0.35,0.378]	chr12	508602	33	UTR3	UTR3:EXON_MRNA	CBX5	ENSG00000094916.16	ENST00000209875.9	protein_coding	protein_coding	protein_coding	protein_coding	27	293	2	1.80183	2.03177	2.26171	0.00333422	1.7612e-4	0.0512081	0.0115653
chr1	114719742	114719841	528219	0	-	0.40404	(0.378,0.408]	chr1	62242	1	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	CSDE1	ENSG00000009307.17	ENST00000339438.10:ENST00000610726.5:ENST00000692719.1:ENST00000358528.9:ENST00000688211.1:ENST00000438362.7:ENST00000689217.1:ENST00000689989.1:ENST00000686025.1:ENST00000686781.1:ENST00000686123.1:ENST00000684913.1:ENST00000686235.1:ENST00000693467.1:ENST00000689732.1:ENST00000693644.1:ENST00000687759.1:ENST00000692044.1:ENST00000689885.1:ENST00000691403.1:ENST00000692629.1:ENST00000690013.1:ENST00000690420.1:ENST00000692950.1:ENST00000686667.1:ENST00000691032.1:ENST00000685676.1:ENST00000529046.6:ENST00000692672.1:ENST00000691377.1:ENST00000689631.1:ENST00000688611.1:ENST00000690207.1:ENST00000693311.1:ENST00000689510.1:ENST00000686581.1:ENST00000689727.1:ENST00000690784.1:ENST00000483030.2:ENST00000687548.1:ENST00000689573.1:ENST00000261443.9:ENST00000530886.5:ENST00000369530.5:ENST00000534699.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	45	2	1.8252	2.031755	2.23831	0.0619563	0.0179575	0.174514	0.114265
chr7	38753804	38753903	3521373	0	-	0.383838	(0.378,0.408]	chr7	328389	11	INTRON	INTRON	VPS41	ENSG00000006715.16	ENST00000310301.9:ENST00000395969.6	protein_coding	protein_coding	protein_coding	protein_coding	4	45	2	1.8252	2.031755	2.23831	0.0619563	0.0179575	0.174514	0.114265
chr11	68568555	68568654	4818430	0	+	0.434343	(0.408,0.44]	chr11	448989	10	INTRON	INTRON	PPP6R3	ENSG00000110075.15	ENST00000534534.5:ENST00000524845.5:ENST00000393800.7:ENST00000265637.8:ENST00000524904.5:ENST00000393801.7:ENST00000265636.9:ENST00000529710.5:ENST00000527403.6:ENST00000534190.5:ENST00000526574.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	53	2	1.78881	2.0317250000000002	2.27464	0.0370259	0.0158016	0.139194	0.109464
chr15	42539409	42539509	6156851	0	-	0.42	(0.408,0.44]	chr15	586055	17	UTR3	UTR3:EXON_MRNA	LRRC57	ENSG00000180979.10	ENST00000323443.6:ENST00000397130.8	protein_coding	protein_coding	protein_coding	protein_coding	5	53	2	1.78881	2.0317250000000002	2.27464	0.0370259	0.0158016	0.139194	0.109464
chr15	63655341	63655441	6199055	0	-	0.38	(0.378,0.408]	chr15	591161	2	SS5_PROX	SS5_PROX:INTRON	HERC1	ENSG00000103657.14	ENST00000443617.7	protein_coding	protein_coding	protein_coding	protein_coding	4	41	2	1.8374	2.03165	2.2259	0.0662381	0.0299228	0.181924	0.142135
chr16	71927513	71927613	6386948	0	+	0.38	(0.378,0.408]	chr16	614143	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	IST1	ENSG00000182149.21	ENST00000544564.5:ENST00000541571.6:ENST00000535424.5:ENST00000606369.5:ENST00000378799.11:ENST00000538565.5:ENST00000329908.12:ENST00000538850.5:ENST00000378798.9:ENST00000439924.6:ENST00000456820.2:ENST00000536027.1:ENST00000541180.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	41	2	1.8374	2.03165	2.2259	0.0662381	0.0299228	0.181924	0.142135
chr7	107105869	107105969	3377780	0	+	0.38	(0.378,0.408]	chr7	316252	136	INTRON	INTRON	PRKAR2B	ENSG00000005249.13	ENST00000265717.5:ENST00000393613.6:ENST00000488792.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	41	2	1.8374	2.03165	2.2259	0.0662381	0.0299228	0.181924	0.142135
chr8	41971807	41971906	3940495	0	-	0.393939	(0.378,0.408]	chr8	361186	68	INTRON	INTRON	KAT6A	ENSG00000083168.11	ENST00000406337.6:ENST00000265713.8:ENST00000396930.4:ENST00000649817.1:ENST00000648335.1:ENST00000649827.1:ENST00000485568.5:ENST00000647809.1:ENST00000647746.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	41	2	1.8374	2.03165	2.2259	0.0662381	0.0299228	0.181924	0.142135
chr12	132772310	132772409	5449618	0	-	0.464646	(0.44,0.476]	chr12	521962	19	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	GOLGA3	ENSG00000090615.16	ENST00000204726.9:ENST00000450791.8:ENST00000693666.1:ENST00000690057.1:ENST00000688114.1:ENST00000687190.1:ENST00000690511.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	14	137	2	2.00922	2.031575	2.05393	0.0068301	0.00119523	0.0713163	0.0317912
chr2	210017689	210017789	1000481	0	+	0.32	(0.28,0.32]	chr2	107404	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPE	ENSG00000197713.15	ENST00000354506.10:ENST00000436630.6:ENST00000408981.6:ENST00000429921.5:ENST00000454822.5:ENST00000359429.11:ENST00000438265.5:ENST00000429907.5:ENST00000438204.6:ENST00000452025.5:ENST00000445268.5:ENST00000411934.6:ENST00000435437.2	protein_coding	protein_coding	protein_coding	protein_coding	12	156	2	1.83303	2.031565	2.2301	0.0129206	0.00173877	0.092874	0.038529
chr7	77713631	77713731	3343241	0	+	0.46	(0.44,0.476]	chr7	311432	159	INTRON	INTRON	RSBN1L	ENSG00000187257.16	ENST00000334955.13:ENST00000445288.5	protein_coding	protein_coding	protein_coding	protein_coding	5	45	2	1.60176	2.031555	2.46135	0.0389597	0.0374637	0.160861	0.140008
chr7	157220974	157221073	3454780	0	+	0.494949	(0.476,0.515]	chr7	322986	3	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	UBE3C	ENSG00000009335.18	ENST00000348165.10:ENST00000470408.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	101	2	1.93124	2.03152	2.1318	0.00916342	0.00333541	0.0812949	0.0528877
chr1	162591574	162591667	238625	0	+	0.483871	(0.476,0.515]	chr1	28740	7	INTRON	INTRON	UAP1	ENSG00000117143.14	ENST00000367925.6:ENST00000367926.9	protein_coding	protein_coding	protein_coding	protein_coding	4	43	2	1.92984	2.03144	2.13304	0.0466474	0.024866	0.151522	0.132101
chr12	120163935	120164035	5432932	0	-	0.48	(0.476,0.515]	chr12	519257	2	SS5_PROX	SS5_PROX:INTRON	GCN1	ENSG00000089154.11	ENST00000300648.7	protein_coding	protein_coding	protein_coding	protein_coding	4	43	2	1.92984	2.03144	2.13304	0.0466474	0.024866	0.151522	0.132101
chr14	21269168	21269197	5835168	0	-	0.482759	(0.476,0.515]	chr14	554476	1	SS5_PROX	SS5_PROX:INTRON	HNRNPC	ENSG00000092199.19	ENST00000336053.10:ENST00000553300.6:ENST00000554969.5:ENST00000556142.5:ENST00000554455.5:ENST00000553753.5:ENST00000555309.5:ENST00000555914.5:ENST00000557442.5:ENST00000556628.5:ENST00000556513.5:ENST00000555883.5:ENST00000557201.5:ENST00000420743.6:ENST00000554539.5:ENST00000554383.5:ENST00000555215.5:ENST00000555137.5:ENST00000554891.5:ENST00000556226.5:ENST00000553614.5:ENST00000557336.1:ENST00000557768.1:ENST00000557033.1:ENST00000555127.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	43	2	1.92984	2.03144	2.13304	0.0466474	0.024866	0.151522	0.132101
chr16	129526	129625	6425676	0	-	0.494949	(0.476,0.515]	chr16	617382	41	INTRON	INTRON	NPRL3	ENSG00000103148.17	ENST00000611875.5:ENST00000622194.4:ENST00000621703.4:ENST00000399953.7:ENST00000457916.5:ENST00000483663.5:ENST00000422814.5:ENST00000468260.5:ENST00000456528.5:ENST00000419636.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	43	2	1.92984	2.03144	2.13304	0.0466474	0.024866	0.151522	0.132101
chr6	104782262	104782362	3171703	0	-	0.49	(0.476,0.515]	chr6	295851	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	HACE1	ENSG00000085382.12	ENST00000262903.9:ENST00000369127.8:ENST00000416605.6:ENST00000517995.5:ENST00000369125.6:ENST00000518503.5:ENST00000517424.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	43	2	1.92984	2.03144	2.13304	0.0466474	0.024866	0.151522	0.132101
chr11	59640981	59641081	4954658	0	-	0.54	(0.515,0.57]	chr11	465257	12	INTRON	INTRON	PATL1	ENSG00000166889.14	ENST00000300146.10	protein_coding	protein_coding	protein_coding	protein_coding	6	55	2	1.56681	2.031405	2.496	0.064862	0.00225531	0.179394	0.0436331
chr2	10317578	10317678	691775	0	+	0.5	(0.476,0.515]	chr2	81125	133	INTRON	INTRON	HPCAL1	ENSG00000115756.13	ENST00000423674.5:ENST00000307845.8:ENST00000381765.7	protein_coding	protein_coding	protein_coding	protein_coding	6	60	2	1.48023	2.03138	2.58253	0.0559072	0.00600101	0.18407	0.0674604
chr10	131904609	131904708	4536900	0	+	0.494949	(0.476,0.515]	chr10	418858	29	INTRON	INTRON	PPP2R2D	ENSG00000175470.20	ENST00000455566.6:ENST00000616467.4:ENST00000482010.6:ENST00000470416.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	52	2	1.7425	2.031255	2.32001	0.0417334	0.0136217	0.147007	0.101682
chr17	45046864	45046964	6782060	0	-	0.51	(0.476,0.515]	chr17	669013	18	INTRON	INTRON	DCAKD	ENSG00000172992.13	ENST00000342350.10:ENST00000452796.7:ENST00000651974.1:ENST00000310604.9:ENST00000688601.1:ENST00000614054.5:ENST00000687739.1:ENST00000688897.1:ENST00000687955.1:ENST00000688577.1:ENST00000588499.6:ENST00000684999.1:ENST00000692180.1:ENST00000693065.1:ENST00000691739.1:ENST00000687525.1:ENST00000686754.1:ENST00000687463.1:ENST00000685712.1:ENST00000592902.6:ENST00000685986.1:ENST00000692907.1:ENST00000689764.1:ENST00000687414.1:ENST00000693328.1:ENST00000688568.1:ENST00000588295.2:ENST00000593094.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	52	2	1.7425	2.031255	2.32001	0.0417334	0.0136217	0.147007	0.101682
chr19	44858285	44858385	7077503	0	+	0.33	(0.32,0.35]	chr19	707693	113	INTRON	INTRON	NECTIN2	ENSG00000130202.10	ENST00000252485.8:ENST00000252483.10	protein_coding	protein_coding	protein_coding	protein_coding	4	45	2	1.61669	2.031245	2.4458	0.0578816	0.0425977	0.188651	0.148082
chr9	130738954	130739054	4214114	0	+	0.65	(0.57,1]	chr9	386427	241	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000393293.4	protein_coding	protein_coding	protein_coding	protein_coding	5	28	2	2.01216	2.03121	2.05026	0.0321326	0.0163389	0.145026	0.101571
chr4	56477395	56477491	1963021	0	+	0.520833	(0.515,0.57]	chr4	196950	3	INTRON	INTRON	SRP72	ENSG00000174780.17	ENST00000642900.1:ENST00000510663.6:ENST00000505314.2	protein_coding	protein_coding	protein_coding	protein_coding	5	45	2	1.67758	2.03117	2.38476	0.0471728	0.0110593	0.168737	0.0873897
chr10	96533120	96533190	4673884	0	-	0.385714	(0.378,0.408]	chr10	430676	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TM9SF3	ENSG00000077147.16	ENST00000371142.9:ENST00000649367.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	52	2	1.45934	2.0311500000000002	2.60296	0.0442931	0.0267851	0.162302	0.123349
chr3	47753272	47753372	1684790	0	-	0.4	(0.378,0.408]	chr3	172116	69	INTRON	INTRON	SMARCC1	ENSG00000173473.11	ENST00000254480.10:ENST00000425518.5:ENST00000454240.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	52	2	1.45934	2.0311500000000002	2.60296	0.0442931	0.0267851	0.162302	0.123349
chr6	149767722	149767820	2996216	0	+	0.397959	(0.378,0.408]	chr6	280349	16	INTRON	INTRON	PCMT1	ENSG00000120265.19	ENST00000367384.7:ENST00000367378.6:ENST00000484601.6:ENST00000367380.9:ENST00000544496.5:ENST00000649295.1:ENST00000494411.6:ENST00000460828.6:ENST00000464889.7:ENST00000486585.2:ENST00000495487.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	52	2	1.45934	2.0311500000000002	2.60296	0.0442931	0.0267851	0.162302	0.123349
chr22	49650727	49650827	7602595	0	-	0.63	(0.57,1]	chr22	778594	233	INTRON	INTRON	MIR3667HG	ENSG00000188511.13	ENST00000414287.5:ENST00000416411.1:ENST00000689875.1:ENST00000400023.5:ENST00000405854.5	lncRNA	lncRNA	lncRNA	lncRNA	5	24	2	1.52818	2.031005	2.53383	0.0508101	0.02547	0.175989	0.12011
chr14	31018828	31018927	5857798	0	-	0.525253	(0.515,0.57]	chr14	556512	37	INTRON	INTRON	STRN3	ENSG00000196792.12	ENST00000355683.9:ENST00000357479.10:ENST00000555358.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	34	2	1.49871	2.030885	2.56306	0.0770828	0.0247751	0.196285	0.131869
chr1	167954455	167954555	248667	0	+	0.54	(0.515,0.57]	chr1	29542	22	INTRON	INTRON	DCAF6	ENSG00000143164.16	ENST00000450548.5:ENST00000470919.5:ENST00000432587.6:ENST00000367843.7:ENST00000470721.5:ENST00000367840.4:ENST00000312263.10:ENST00000455334.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	10	85	2	2.0031	2.030495	2.05789	0.00786509	0.00357298	0.076155	0.0548435
chr5	28873330	28873430	2330483	0	+	0.46	(0.44,0.476]	chr5	225135	628	INTRON	INTRON	LINC02109	ENSG00000259786.7	ENST00000658190.1	lncRNA	lncRNA	lncRNA	lncRNA	10	102	2	1.9037	2.03048	2.15726	0.00735504	0.00508124	0.0739587	0.0646039
chr11	9197056	9197155	4908382	0	-	0.474747	(0.44,0.476]	chr11	460086	30	INTRON	INTRON	DENND5A	ENSG00000184014.9	ENST00000328194.8:ENST00000681203.1:ENST00000530780.2:ENST00000679999.1:ENST00000680470.1:ENST00000680599.1:ENST00000680554.1:ENST00000679745.1:ENST00000680252.1:ENST00000681425.1:ENST00000681158.1:ENST00000679460.1:ENST00000679568.1:ENST00000679446.1:ENST00000680294.1:ENST00000680742.1:ENST00000680885.1:ENST00000680576.1:ENST00000530044.5:ENST00000526707.5:ENST00000681173.1:ENST00000530867.2:ENST00000681915.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	32	2	1.85146	2.030475	2.20949	0.0672585	0.0545846	0.183051	0.182529
chr11	64908490	64908590	4966223	0	-	0.46	(0.44,0.476]	chr11	467892	1	SS5_PROX	SS5_PROX:INTRON	ATG2A	ENSG00000110046.13	ENST00000377264.8:ENST00000418259.5:ENST00000421419.3	protein_coding	protein_coding	protein_coding	protein_coding	3	32	2	1.85146	2.030475	2.20949	0.0672585	0.0545846	0.183051	0.182529
chr19	34344625	34344723	7052301	0	+	0.459184	(0.44,0.476]	chr19	703314	18	INTRON	INTRON	GARRE1	ENSG00000166398.14	ENST00000299505.8:ENST00000588338.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	32	2	1.85146	2.030475	2.20949	0.0672585	0.0545846	0.183051	0.182529
chr2	46626507	46626606	770580	0	+	0.444444	(0.44,0.476]	chr2	86971	24	UTR3	UTR3:EXON_MRNA	CRIPT	ENSG00000119878.6	ENST00000238892.4	protein_coding	protein_coding	protein_coding	protein_coding	3	32	2	1.85146	2.030475	2.20949	0.0672585	0.0545846	0.183051	0.182529
chr2	183030493	183030593	1285954	0	-	0.45	(0.44,0.476]	chr2	135438	51	INTRON	INTRON	NCKAP1	ENSG00000061676.15	ENST00000361354.9:ENST00000360982.2	protein_coding	protein_coding	protein_coding	protein_coding	3	32	2	1.85146	2.030475	2.20949	0.0672585	0.0545846	0.183051	0.182529
chr5	131785224	131785323	2720627	0	-	0.474747	(0.44,0.476]	chr5	255730	402	INTRON	INTRON	FNIP1	ENSG00000217128.13	ENST00000510461.6:ENST00000307954.12:ENST00000307968.11:ENST00000511848.1	protein_coding	protein_coding	protein_coding	protein_coding	3	32	2	1.85146	2.030475	2.20949	0.0672585	0.0545846	0.183051	0.182529
chr7	631743	631843	3458663	0	-	0.47	(0.44,0.476]	chr7	323434	239	INTRON	INTRON	PRKAR1B	ENSG00000188191.15	ENST00000544935.5:ENST00000537384.6:ENST00000406797.5:ENST00000403562.5:ENST00000360274.8:ENST00000430040.5:ENST00000414568.5:ENST00000417852.5	protein_coding	protein_coding	protein_coding	protein_coding	3	32	2	1.85146	2.030475	2.20949	0.0672585	0.0545846	0.183051	0.182529
chr7	66671755	66671854	3324782	0	+	0.454545	(0.44,0.476]	chr7	309213	3	INTRON	INTRON	ENSG00000226824	ENSG00000226824.8	ENST00000693151.1	lncRNA	lncRNA	lncRNA	lncRNA	3	32	2	1.85146	2.030475	2.20949	0.0672585	0.0545846	0.183051	0.182529
chr4	183130014	183130114	2084088	0	+	0.38	(0.378,0.408]	chr4	205959	300	INTRON	INTRON	WWC2	ENSG00000151718.16	ENST00000403733.8:ENST00000508614.5:ENST00000448232.6:ENST00000513834.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	55	2	1.82258	2.030445	2.23831	0.0341279	0.0179575	0.135102	0.114265
chr16	203117	203216	6425919	0	-	0.383838	(0.378,0.408]	chr16	617421	35	INTRON	INTRON	LUC7L	ENSG00000007392.17	ENST00000337351.8:ENST00000426094.5:ENST00000397783.5:ENST00000629543.2:ENST00000490762.5:ENST00000293872.13:ENST00000429378.5:ENST00000464711.5:ENST00000419516.5:ENST00000397780.5:ENST00000495349.5:ENST00000418978.5:ENST00000430864.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	104	2	1.62294	2.030355	2.43777	0.0222846	0.00144299	0.116433	0.034834
chr6	154767294	154767393	3002156	0	+	0.383838	(0.378,0.408]	chr6	280737	249	INTRON	INTRON	SCAF8	ENSG00000213079.10	ENST00000367186.7:ENST00000417268.3:ENST00000461219.5:ENST00000367178.8:ENST00000464628.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	62	2	1.84831	2.030345	2.21238	0.0218124	0.0172621	0.11491	0.111749
chr8	123375268	123375367	4042428	0	-	0.383838	(0.378,0.408]	chr8	368782	22	INTRON	INTRON	ATAD2	ENSG00000156802.13	ENST00000287394.10:ENST00000517666.5:ENST00000521903.5:ENST00000519124.5:ENST00000521496.5:ENST00000530065.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	62	2	1.84831	2.030345	2.21238	0.0218124	0.0172621	0.11491	0.111749
chr1	23768232	23768331	401195	0	-	0.464646	(0.44,0.476]	chr1	48105	67	INTRON	INTRON	ELOA-AS1	ENSG00000236810.7	ENST00000655402.1:ENST00000427796.6:ENST00000686609.1:ENST00000664563.2:ENST00000652963.1	lncRNA	lncRNA	lncRNA	lncRNA	4	41	2	1.66462	2.03033	2.39604	0.0520247	0.0404291	0.161534	0.159508
chr6	15406825	15406925	2824556	0	+	0.32	(0.28,0.32]	chr6	265198	322	INTRON	INTRON	JARID2	ENSG00000008083.14	ENST00000341776.7:ENST00000397311.4	protein_coding	protein_coding	protein_coding	protein_coding	6	81	2	1.64432	2.030285	2.41625	0.0606133	0.00419958	0.171142	0.0592209
chr7	100348038	100348136	3364459	0	+	0.357143	(0.35,0.378]	chr7	314647	17	INTRON	INTRON	STAG3L5P:STAG3L5P-PVRIG2P-PILRB	ENSG00000242294.6:ENSG00000272752.6	ENST00000473757.5:ENST00000470714.5:ENST00000310771.8:ENST00000483329.6:ENST00000444874.5:ENST00000488972.6:ENST00000493499.1	lncRNA	retained_intron	lncRNA:transcribed_unprocessed_pseudogene	retained_intron:lncRNA:processed_transcript	9	96	2	1.56836	2.03027	2.49218	0.0240966	0.00348124	0.129929	0.0521496
chr10	73033949	73034048	4647207	0	-	0.484848	(0.476,0.515]	chr10	427500	32	INTRON	INTRON	P4HA1	ENSG00000122884.13	ENST00000394890.7:ENST00000307116.6:ENST00000373008.6:ENST00000440381.5:ENST00000263556.3	protein_coding	protein_coding	protein_coding	protein_coding	5	52	2	1.74317	2.030215	2.31726	0.0396373	0.015077	0.161534	0.0994339
chr17	40231423	40231523	6609585	0	+	0.49	(0.476,0.515]	chr17	643734	105	INTRON	INTRON	WIPF2	ENSG00000171475.14	ENST00000323571.9:ENST00000583268.1:ENST00000494757.5:ENST00000582781.5:ENST00000585043.5:ENST00000394103.7:ENST00000583130.5:ENST00000584296.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	52	2	1.74317	2.030215	2.31726	0.0396373	0.015077	0.161534	0.0994339
chr1	153638748	153638848	226756	0	+	0.31	(0.28,0.32]	chr1	25983	3	SS5_PROX	SS5_PROX:INTRON	CHTOP	ENSG00000160679.13	ENST00000368690.7:ENST00000614256.4:ENST00000368694.8:ENST00000495554.1:ENST00000403433.5:ENST00000368687.1:ENST00000368686.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	42	2	1.76293	2.030085	2.29724	0.0766478	0.0554156	0.196164	0.18407
chr6	43628008	43628101	3097591	0	-	0.451613	(0.44,0.476]	chr6	290202	7	INTRON	INTRON	GTPBP2	ENSG00000172432.19	ENST00000307126.10:ENST00000442748.5:ENST00000452781.1	protein_coding	protein_coding	protein_coding	protein_coding	5	53	2	1.83899	2.03001	2.22103	0.0589734	0.00776319	0.167915	0.0787356
chr7	121218219	121218319	3395951	0	+	0.42	(0.408,0.44]	chr7	317781	682	INTRON	INTRON	CPED1	ENSG00000106034.18	ENST00000310396.10:ENST00000450913.6:ENST00000423795.5:ENST00000466055.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	73	2	1.3378	2.02994	2.72208	0.050805	0.00364449	0.175989	0.0535094
chr1	96800398	96800498	168739	0	+	0.38	(0.378,0.408]	chr1	18249	148	INTRON	INTRON	PTBP2	ENSG00000117569.19	ENST00000482253.5:ENST00000675735.1:ENST00000609116.5:ENST00000674951.1:ENST00000675080.1:ENST00000426398.3:ENST00000370197.5:ENST00000370198.5:ENST00000476419.5:ENST00000676292.1:ENST00000676096.1:ENST00000675365.1:ENST00000674579.1:ENST00000675401.1:ENST00000459735.5:ENST00000476783.5:ENST00000492905.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	95	2	2.01071	2.0299	2.04909	0.0111045	0.0048937	0.0876025	0.0641889
chr5	179591124	179591224	2560191	0	+	0.37	(0.35,0.378]	chr5	244769	1	SS3_PROX	SS3_PROX:INTRON	RUFY1	ENSG00000176783.15	ENST00000319449.9:ENST00000393448.6:ENST00000393438.6:ENST00000437570.6:ENST00000508609.5:ENST00000502434.1:ENST00000509797.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	57	2	1.98929	2.02989	2.07049	0.0417909	0.0140397	0.147075	0.102801
chr16	89472961	89473061	6543426	0	-	0.53	(0.515,0.57]	chr16	634281	413	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	14	118	2	1.96292	2.02987	2.09682	0.0026155	0.00221461	0.0455413	0.0435144
chr19	48917287	48917384	7087944	0	+	0.412371	(0.408,0.44]	chr19	709359	34	INTRON	INTRON	NUCB1	ENSG00000104805.16	ENST00000405315.9:ENST00000407032.5:ENST00000452087.5:ENST00000485798.5:ENST00000424608.1:ENST00000465524.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	67	2	1.27662	2.029755	2.78289	0.0787183	0.0022785	0.198567	0.0437013
chr3	39407786	39407867	1401791	0	+	0.358025	(0.35,0.378]	chr3	147210	1	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	RPSA	ENSG00000168028.14	ENST00000477325.1:ENST00000475346.1:ENST00000487876.1:ENST00000301821.11:ENST00000458478.5:ENST00000443003.2:ENST00000444512.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	73	2	1.33846	2.0296950000000002	2.72093	0.0687435	0.00314173	0.184298	0.0514466
chr19	21737481	21737581	7158997	0	-	0.37	(0.35,0.378]	chr19	723706	91	INTRON	INTRON	ZNF100	ENSG00000197020.12	ENST00000358296.11:ENST00000305570.10:ENST00000594401.1	protein_coding	protein_coding	protein_coding	protein_coding	5	57	2	1.56287	2.02965	2.49643	0.0697648	0.00752974	0.184298	0.0773151
chr8	129543240	129543340	4060715	0	-	0.44	(0.408,0.44]	chr8	369648	327	INTRON	INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1:ENST00000676273.1:ENST00000667643.1:ENST00000668791.1:ENST00000663716.1:ENST00000663572.1:ENST00000676148.1:ENST00000667962.1:ENST00000674877.1:ENST00000675316.1:ENST00000674656.1:ENST00000446592.7:ENST00000667341.1:ENST00000675186.1:ENST00000652971.1:ENST00000661447.1:ENST00000674863.1:ENST00000675498.1:ENST00000675527.1:ENST00000676108.1:ENST00000657647.1:ENST00000675589.1:ENST00000675913.1:ENST00000675109.1:ENST00000671632.1:ENST00000671311.1:ENST00000676099.1:ENST00000660652.1:ENST00000675522.1:ENST00000675183.1:ENST00000658861.1:ENST00000663991.1:ENST00000675044.1:ENST00000675435.1:ENST00000674639.1:ENST00000676069.1:ENST00000675532.1:ENST00000674762.1:ENST00000523151.6:ENST00000675948.1:ENST00000665364.1:ENST00000657251.1:ENST00000675166.1:ENST00000674883.1:ENST00000675867.1:ENST00000674580.1:ENST00000675393.1:ENST00000520048.1:ENST00000674906.1:ENST00000676030.1:ENST00000670588.1:ENST00000675072.1:ENST00000664936.1:ENST00000652914.1:ENST00000657069.1	lncRNA	lncRNA	lncRNA	lncRNA	9	93	2	1.82275	2.02957	2.23639	0.0123226	0.00445002	0.097243	0.0592079
chr12	62370107	62370206	5150665	0	+	0.535354	(0.515,0.57]	chr12	487365	143	INTRON	INTRON	USP15	ENSG00000135655.16	ENST00000353364.7:ENST00000280377.10:ENST00000547317.5:ENST00000549268.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	37	2	1.9459	2.029515	2.11313	0.0429089	0.0256725	0.148082	0.133676
chr12	76541970	76542070	5372207	0	-	0.52	(0.515,0.57]	chr12	512509	36	INTRON	INTRON	OSBPL8	ENSG00000091039.17	ENST00000261183.8:ENST00000393249.6:ENST00000611266.4:ENST00000393250.8:ENST00000547540.5:ENST00000553139.5:ENST00000549570.5:ENST00000550628.5:ENST00000549646.5:ENST00000551927.5:ENST00000547544.5:ENST00000552178.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	37	2	1.9459	2.029515	2.11313	0.0429089	0.0256725	0.148082	0.133676
chrX	12976069	12976165	7622122	0	+	0.5625	(0.515,0.57]	chrX	780223	11	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TMSB4X	ENSG00000205542.11	ENST00000380636.1:ENST00000451311.7:ENST00000380635.5:ENST00000380633.1	protein_coding	protein_coding	protein_coding	protein_coding	9	78	2	1.90463	2.0294600000000003	2.15429	0.0141753	0.00272344	0.0959618	0.0481781
chrX	154786600	154786700	7915414	0	-	0.6	(0.57,1]	chrX	806146	2	SS3_PROX	SS3_PROX:INTRON	MPP1	ENSG00000130830.15	ENST00000369534.8:ENST00000413259.7:ENST00000439370.5:ENST00000393531.5:ENST00000453245.5:ENST00000494170.1:ENST00000462825.5:ENST00000393529.5:ENST00000475943.5:ENST00000428488.1:ENST00000488754.5:ENST00000417435.5:ENST00000488694.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	47	2	1.83525	2.029455	2.22366	0.0110377	0.00344378	0.0873897	0.0539802
chr1	31049123	31049223	412730	0	-	0.48	(0.476,0.515]	chr1	49733	199	INTRON	INTRON	PUM1	ENSG00000134644.16	ENST00000426105.7:ENST00000373747.7:ENST00000257075.9:ENST00000424085.6:ENST00000525843.5:ENST00000440538.6:ENST00000373741.8:ENST00000373742.6:ENST00000526215.5:ENST00000525948.5:ENST00000480602.1:ENST00000524516.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	66	2	1.43644	2.0294	2.62236	0.047372	0.00517	0.169265	0.0631506
chr4	110182659	110182759	2227575	0	-	0.52	(0.515,0.57]	chr4	218024	767	INTRON	INTRON	ELOVL6	ENSG00000170522.10	ENST00000394607.7:ENST00000302274.8:ENST00000514184.5:ENST00000506625.5:ENST00000506461.1:ENST00000503885.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	54	2	1.94493	2.029385	2.11384	0.0204583	0.0118599	0.122204	0.0899583
chr12	50781534	50781634	5139818	0	+	0.54	(0.515,0.57]	chr12	484711	9	INTRON	INTRON	ATF1	ENSG00000123268.9	ENST00000552510.5:ENST00000549612.5:ENST00000262053.8:ENST00000551831.5:ENST00000552487.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	28	2	1.7074	2.029325	2.35125	0.0779432	0.0436431	0.196685	0.162255
chr2	235496647	235496747	1041361	0	+	0.45	(0.44,0.476]	chr2	111217	14	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	82	2	1.79873	2.029325	2.25992	0.0223888	0.00324123	0.116918	0.0524329
chr21	44789194	44789294	7468605	0	-	0.52	(0.515,0.57]	chr21	761177	7	INTRON	INTRON	UBE2G2	ENSG00000184787.19	ENST00000345496.7:ENST00000497630.5:ENST00000477954.5:ENST00000491513.5:ENST00000330942.9:ENST00000478200.1:ENST00000497664.5:ENST00000462569.5:ENST00000490450.5:ENST00000496395.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	28	2	1.7074	2.029325	2.35125	0.0779432	0.0436431	0.196685	0.162255
chr1	40385571	40385671	81562	0	+	0.43	(0.408,0.44]	chr1	10553	105	INTRON	INTRON	SMAP2	ENSG00000084070.12	ENST00000435168.6:ENST00000372718.8:ENST00000372708.5	protein_coding	protein_coding	protein_coding	protein_coding	7	75	2	1.64062	2.02929	2.41796	0.0557275	0.0015483	0.165463	0.0363194
chr22	19927449	19927549	7556181	0	-	0.55	(0.515,0.57]	chr22	772554	75	INTRON	INTRON	TXNRD2	ENSG00000184470.21	ENST00000400518.5:ENST00000542719.6:ENST00000474308.5:ENST00000400525.6:ENST00000400521.7:ENST00000400519.6:ENST00000491939.6:ENST00000334363.14:ENST00000496729.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	51	2	1.43029	2.02923	2.62817	0.0645632	0.004048	0.179192	0.0578376
chr5	87409072	87409144	2668886	0	-	0.319444	(0.28,0.32]	chr5	252596	1	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CCNH	ENSG00000134480.16	ENST00000645953.1:ENST00000508855.5:ENST00000256897.9:ENST00000504878.1:ENST00000513499.5:ENST00000510020.5:ENST00000505230.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	57	2	1.83771	2.0292	2.22069	0.0591725	0.0243177	0.189982	0.12011
chr5	32147775	32147875	2597250	0	-	0.38	(0.378,0.408]	chr5	246744	35	INTRON	INTRON	GOLPH3	ENSG00000113384.14	ENST00000265070.7:ENST00000503610.5:ENST00000512668.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	45	2	1.76032	2.02915	2.29798	0.0721577	0.0147606	0.187433	0.106702
chr17	4231880	4231979	6711053	0	-	0.363636	(0.35,0.378]	chr17	657665	144	INTRON	INTRON	ANKFY1	ENSG00000185722.18	ENST00000341657.9:ENST00000648043.1:ENST00000570535.5:ENST00000574367.5:ENST00000572412.5:ENST00000570934.5:ENST00000575955.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	36	2	1.75561	2.02905	2.30249	0.0739399	0.0519726	0.190914	0.176696
chr5	27492770	27492870	2329798	0	+	0.37	(0.35,0.378]	chr5	225123	30	INTRON	INTRON	PURPL	ENSG00000250337.8	ENST00000651409.1:ENST00000650981.1:ENST00000655107.1:ENST00000657375.2:ENST00000659077.1:ENST00000653835.1:ENST00000657173.1:ENST00000514844.6:ENST00000657424.1:ENST00000660307.1:ENST00000669423.1:ENST00000652841.1:ENST00000686605.1:ENST00000690628.1:ENST00000510165.6:ENST00000670554.1:ENST00000665451.1:ENST00000667624.1:ENST00000667420.1:ENST00000660639.1:ENST00000668406.1:ENST00000656783.1:ENST00000664566.1:ENST00000659489.1:ENST00000667264.1:ENST00000654039.1:ENST00000505775.5:ENST00000668103.1:ENST00000664501.1:ENST00000661698.1:ENST00000655438.1:ENST00000658312.1	lncRNA	lncRNA	lncRNA	lncRNA	3	36	2	1.75561	2.02905	2.30249	0.0739399	0.0519726	0.190914	0.176696
chr1	17421328	17421421	384798	0	-	0.516129	(0.515,0.57]	chr1	45471	1	INTRON	INTRON	RCC2	ENSG00000179051.14	ENST00000375436.9:ENST00000375433.3	protein_coding	protein_coding	protein_coding	protein_coding	6	51	2	1.84511	2.0289200000000003	2.21273	0.0196151	0.0167182	0.110511	0.109486
chr12	118366977	118367076	5430234	0	-	0.474747	(0.44,0.476]	chr12	518775	74	INTRON	INTRON	TAOK3	ENSG00000135090.14	ENST00000392533.8:ENST00000542532.5:ENST00000542692.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	52	2	1.81595	2.0289200000000003	2.24189	0.0317953	0.0193405	0.14477	0.108861
chr6	126000211	126000310	2956199	0	+	0.393939	(0.378,0.408]	chr6	278005	2	INTRON	INTRON	TRMT11	ENSG00000066651.20	ENST00000479748.5:ENST00000368332.7:ENST00000461129.5:ENST00000648977.1:ENST00000468097.5:ENST00000334379.11	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	45	2	1.94681	2.02892	2.11103	0.0457723	0.0266911	0.149888	0.134419
chr7	6480607	6480706	3478333	0	-	0.323232	(0.32,0.35]	chr7	325469	60	INTRON	INTRON	DAGLB:KDELR2	ENSG00000164535.15:ENSG00000136240.10	ENST00000436575.5:ENST00000463747.1:ENST00000258739.9:ENST00000490996.1:ENST00000382267.3:ENST00000462052.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	13	152	2	1.91414	2.02885	2.14356	0.011737	0.00120242	0.0894475	0.0319703
chr1	151617856	151617955	225778	0	+	0.313131	(0.28,0.32]	chr1	25862	30	INTRON	INTRON	SNX27	ENSG00000143376.14	ENST00000642376.1:ENST00000368843.8:ENST00000458013.7:ENST00000368841.7:ENST00000642479.1:ENST00000642349.1:ENST00000643179.1:ENST00000643814.1:ENST00000642582.1:ENST00000644970.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	76	2	1.76061	2.028845	2.29708	0.0253826	0.0195087	0.133676	0.109483
chr14	55274377	55274476	5725823	0	+	0.363636	(0.35,0.378]	chr14	543446	17	INTRON	INTRON	FBXO34	ENSG00000178974.11	ENST00000681400.1:ENST00000681904.1:ENST00000679934.1:ENST00000681074.1:ENST00000680682.1:ENST00000680658.1:ENST00000313833.5:ENST00000554940.1:ENST00000440021.1:ENST00000555087.1:ENST00000557647.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	100	2	1.69092	2.02879	2.36666	0.0239575	0.00212276	0.11951	0.0426185
chr1	245944265	245944365	675071	0	-	0.39	(0.378,0.408]	chr1	79699	136	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000366517.5:ENST00000490107.6:ENST00000493441.5:ENST00000488153.5:ENST00000492487.5:ENST00000391836.3:ENST00000464398.1:ENST00000453676.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	54	2	1.94559	2.028765	2.11194	0.0292534	0.0211434	0.128055	0.122929
chr4	78837485	78837585	1982000	0	+	0.44	(0.408,0.44]	chr4	198479	34	INTRON	INTRON	BMP2K	ENSG00000138756.19	ENST00000389010.7:ENST00000502613.3:ENST00000502871.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	53	2	1.69566	2.028755	2.36185	0.0453922	0.0133164	0.164236	0.094512
chr2	38594531	38594630	1099694	0	-	0.232323	[0,0.28]	chr2	117957	25	INTRON	INTRON	HNRNPLL	ENSG00000143889.16	ENST00000449105.8:ENST00000409636.5:ENST00000358367.8:ENST00000608859.5:ENST00000378915.7:ENST00000409328.5:ENST00000410076.5:ENST00000425682.1:ENST00000498516.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	63	2	1.812	2.02873	2.24546	0.0729149	0.0206502	0.189235	0.122348
chr3	43509521	43509621	1674309	0	-	0.35	(0.32,0.35]	chr3	170972	764	INTRON	INTRON	ANO10	ENSG00000160746.13	ENST00000292246.8:ENST00000350459.8:ENST00000396091.7:ENST00000414522.6:ENST00000451430.6:ENST00000448045.1	protein_coding	protein_coding	protein_coding	protein_coding	5	61	2	1.83315	2.02872	2.22429	0.0313348	0.0226421	0.144381	0.117557
chr1	225923511	225923605	646273	0	-	0.553191	(0.515,0.57]	chr1	76564	13	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	PYCR2	ENSG00000143811.20	ENST00000612039.4:ENST00000478402.5:ENST00000343818.11:ENST00000489681.5:ENST00000472798.2:ENST00000467298.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	51	2	1.56838	2.0287	2.48902	0.0424458	0.00760558	0.161763	0.0749571
chr8	129348132	129348230	4058741	0	-	0.377551	(0.35,0.378]	chr8	369545	30	INTRON	INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000657400.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1	lncRNA	lncRNA	lncRNA	lncRNA	8	92	2	1.90041	2.0286850000000003	2.15696	0.0145936	0.00672191	0.105992	0.070858
chr2	15512049	15512149	1072669	0	-	0.33	(0.32,0.35]	chr2	114441	3	INTRON	INTRON	NBAS	ENSG00000151779.13	ENST00000281513.10	protein_coding	protein_coding	protein_coding	protein_coding	10	121	2	1.74135	2.028685	2.31602	0.0298264	0.00100216	0.129138	0.029173
chr11	2952385	2952481	4891578	0	-	0.375	(0.35,0.378]	chr11	458280	7	EXON_MRNA	EXON_MRNA:INTRON	NAP1L4	ENSG00000205531.13	ENST00000620138.4:ENST00000380542.9:ENST00000469805.5:ENST00000526115.5:ENST00000492594.6:ENST00000492685.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	14	129	2	1.51341	2.028675	2.54394	0.0122441	0.0028214	0.0969406	0.0472361
chr11	86048083	86048183	5014633	0	-	0.45	(0.44,0.476]	chr11	473022	161	INTRON	INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000630913.2:ENST00000528398.5:ENST00000356360.9:ENST00000534412.5:ENST00000531558.1:ENST00000531930.5:ENST00000532041.5:ENST00000525162.5:ENST00000528256.1:ENST00000528411.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	40	392	2	1.71555	2.028635	2.34172	0.00246472	3.57019e-5	0.0446195	0.00478489
chr18	55549086	55549183	6978302	0	-	0.494845	(0.476,0.515]	chr18	690437	23	INTRON	INTRON	TCF4	ENSG00000196628.20	ENST00000354452.8:ENST00000616053.4:ENST00000636400.2:ENST00000356073.8:ENST00000636751.2:ENST00000635822.2:ENST00000637115.2:ENST00000638154.3:ENST00000637239.2:ENST00000564999.5:ENST00000629387.2:ENST00000568673.5:ENST00000540999.5:ENST00000537578.5:ENST00000568740.5:ENST00000565018.6:ENST00000566279.5:ENST00000566286.5:ENST00000567880.5:ENST00000398339.5:ENST00000564403.6:ENST00000627136.2:ENST00000566514.5:ENST00000630319.2:ENST00000568169.5:ENST00000565908.6:ENST00000627685.2:ENST00000626595.2:ENST00000626425.2:ENST00000563824.5:ENST00000568147.5:ENST00000563888.6:ENST00000564343.5:ENST00000627784.2:ENST00000562543.5:ENST00000562847.5:ENST00000569357.4:ENST00000674598.1:ENST00000627320.2:ENST00000630224.2:ENST00000565124.4:ENST00000627568.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	43	2	1.79693	2.028635	2.26034	0.0649782	0.0166235	0.179417	0.110511
chr16	328367	328467	6426613	0	-	0.47	(0.44,0.476]	chr16	617500	133	INTRON	INTRON	AXIN1	ENSG00000103126.15	ENST00000262320.8:ENST00000461023.5:ENST00000354866.7:ENST00000481769.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	61	2	1.72421	2.028465	2.33272	0.0285163	0.0129984	0.12666	0.0991656
chr5	32160060	32160160	2597373	0	-	0.38	(0.378,0.408]	chr5	246744	158	INTRON	INTRON	GOLPH3	ENSG00000113384.14	ENST00000265070.7:ENST00000503610.5:ENST00000512668.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	40	2	1.59317	2.02845	2.46373	0.0603812	0.0382831	0.19151	0.141795
chr1	25336539	25336614	403254	0	-	0.306667	(0.28,0.32]	chr1	48410	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RSRP1	ENSG00000117616.18	ENST00000473314.6:ENST00000561867.1:ENST00000568996.1:ENST00000568399.1:ENST00000562018.1:ENST00000567741.1:ENST00000566599.1:ENST00000564413.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	76	2	1.79739	2.02839	2.25939	0.0224995	0.021772	0.124921	0.11491
chr8	6748723	6748821	3695413	0	+	0.489796	(0.476,0.515]	chr8	342871	5	INTRON	INTRON	AGPAT5	ENSG00000155189.12	ENST00000285518.11:ENST00000523234.5:ENST00000518327.1:ENST00000530716.1:ENST00000533159.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	32	2	1.91817	2.028355	2.13854	0.0776563	0.0459211	0.196285	0.164984
chrX	14026321	14026414	7764603	0	-	0.494624	(0.476,0.515]	chrX	793614	1	SS3_PROX	SS3_PROX:INTRON	GEMIN8	ENSG00000046647.14	ENST00000680255.1:ENST00000477386.2:ENST00000380523.8:ENST00000398355.7:ENST00000332885.7	protein_coding	protein_coding	protein_coding	protein_coding	3	32	2	1.91817	2.028355	2.13854	0.0776563	0.0459211	0.196285	0.164984
chr21	10423990	10424090	7368234	0	+	0.29	(0.28,0.32]	chr21	751975	87	INTRON	INTRON	BAGE2	ENSG00000187172.15	ENST00000474011.5:ENST00000470054.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	6	76	2	1.72287	2.02834	2.33381	0.0286502	0.0174951	0.139456	0.104863
chr19	28478770	28478870	7165882	0	-	0.45	(0.44,0.476]	chr19	724189	105	INTRON	INTRON	ENSG00000283403:ENSG00000267243	ENSG00000283403.1:ENSG00000267243.6	ENST00000592347.5:ENST00000593065.5	lncRNA	lncRNA	lncRNA	lncRNA	9	87	2	1.60853	2.0283249999999997	2.44812	0.020211	0.00368597	0.121301	0.0535094
chr6	12049232	12049332	2814598	0	+	0.53	(0.515,0.57]	chr6	264800	101	INTRON	INTRON	HIVEP1	ENSG00000095951.17	ENST00000491710.5:ENST00000487103.5:ENST00000379388.7:ENST00000627968.2:ENST00000541134.5:ENST00000442081.6:ENST00000478545.1	protein_coding	protein_coding	protein_coding	protein_coding	4	34	2	1.81744	2.028295	2.23915	0.0596178	0.031028	0.16883600000000001	0.143457
chr8	11805980	11806078	3702554	0	+	0.346939	(0.32,0.35]	chr8	343487	21	INTRON	INTRON	FDFT1	ENSG00000079459.13	ENST00000538689.4:ENST00000615631.4:ENST00000618539.4:ENST00000530337.5:ENST00000623368.3:ENST00000446331.6:ENST00000443614.6:ENST00000220584.9:ENST00000525607.5:ENST00000525283.5:ENST00000529464.5:ENST00000525900.5:ENST00000528812.5:ENST00000622850.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	11	130	2	1.86224	2.02825	2.19426	0.0203914	0.00126656	0.11076	0.0330145
chr6	160045444	160045544	3023746	0	+	0.43	(0.408,0.44]	chr6	282083	3	SS3_PROX	SS3_PROX:INTRON	IGF2R	ENSG00000197081.16	ENST00000676781.1:ENST00000677704.1:ENST00000356956.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	39	2	1.69566	2.028195	2.36073	0.0481658	0.0453922	0.164236	0.153019
chr12	62405169	62405268	5151032	0	+	0.323232	(0.32,0.35]	chr12	487439	9	UTR3	UTR3:EXON_MRNA:INTRON	USP15	ENSG00000135655.16	ENST00000353364.7:ENST00000280377.10:ENST00000549415.1	protein_coding	protein_coding	protein_coding	protein_coding	6	70	2	1.38564	2.0281599999999997	2.67068	0.0793006	0.00406276	0.199711	0.0578984
chr4	32044492	32044592	1941893	0	+	0.31	(0.28,0.32]	chr4	194727	463	INTRON	INTRON	LINC02506	ENSG00000251129.3	ENST00000662669.1:ENST00000665582.2:ENST00000667252.2:ENST00000660373.2:ENST00000684849.1:ENST00000513211.2:ENST00000659613.1:ENST00000657576.1:ENST00000686730.1:ENST00000685407.1:ENST00000685455.1:ENST00000655951.1	lncRNA	lncRNA	lncRNA	lncRNA	7	93	2	1.79739	2.0281000000000002	2.25881	0.0224995	0.009974	0.124921	0.0842795
chr6	57169725	57169821	2878878	0	+	0.354167	(0.35,0.378]	chr6	273329	14	UTR3	UTR3:EXON_MRNA	ZNF451	ENSG00000112200.17	ENST00000357489.7:ENST00000370706.9	protein_coding	protein_coding	protein_coding	protein_coding	6	66	2	2.01378	2.02801	2.04224	0.0363073	0.00952336	0.138959	0.0863913
chr3	47829818	47829910	1420246	0	+	0.369565	(0.35,0.378]	chr3	149234	3	INTRON	INTRON	DHX30	ENSG00000132153.15	ENST00000395745.6:ENST00000445061.6:ENST00000441384.5:ENST00000348968.8:ENST00000446256.6:ENST00000619982.4:ENST00000457607.1:ENST00000470959.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	57	2	1.5118	2.0280050000000003	2.54421	0.0789277	0.00630238	0.198963	0.0722266
chr10	17446664	17446764	4568939	0	-	0.37	(0.35,0.378]	chr10	421387	557	INTRON	INTRON	ST8SIA6	ENSG00000148488.17	ENST00000377602.5:ENST00000648997.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	65	2	1.68908	2.0279249999999998	2.36677	0.0301354	0.0139343	0.142482	0.0957526
chr20	47241329	47241428	7348344	0	-	0.363636	(0.35,0.378]	chr20	749270	18	INTRON	INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000467200.6:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000468376.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	57	2	1.6599	2.0278650000000003	2.39583	0.0545616	0.0107976	0.165292	0.0920575
chr3	28271258	28271358	1390844	0	+	0.47	(0.44,0.476]	chr3	145643	75	INTRON	INTRON	CMC1	ENSG00000187118.14	ENST00000477739.1:ENST00000423894.5:ENST00000466830.6:ENST00000334841.10:ENST00000418849.2:ENST00000396610.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	91	2	1.99228	2.027845	2.06341	0.00871005	0.00615695	0.0788605	0.0711648
chr7	72951364	72951460	3553769	0	-	0.385417	(0.378,0.408]	chr7	330613	8	INTRON	INTRON	NSUN5P2	ENSG00000106133.18	ENST00000602348.5:ENST00000444583.6:ENST00000388955.8:ENST00000485741.6:ENST00000457352.4	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	7	75	2	1.84831	2.027715	2.20712	0.0172621	0.00978751	0.111749	0.0835427
chr16	9112982	9113081	6285586	0	+	0.272727	[0,0.28]	chr16	601929	99	UTR3	UTR3:EXON_MRNA:INTRON	C16orf72	ENSG00000182831.12	ENST00000327827.12:ENST00000574285.2	protein_coding	protein_coding	protein_coding	protein_coding	11	159	2	1.94385	2.02765	2.11145	0.0113428	0.00550323	0.0886611	0.0672816
chr21	46198859	46198958	7470563	0	-	0.292929	(0.28,0.32]	chr21	761464	22	INTRON	INTRON	LSS	ENSG00000160285.15	ENST00000356396.8:ENST00000397728.8:ENST00000457828.6:ENST00000522411.5	protein_coding	protein_coding	protein_coding	protein_coding	13	156	2	1.73765	2.027615	2.31758	0.0073041	0.00445104	0.0762054	0.0592169
chr6	35357539	35357639	2852128	0	+	0.51	(0.476,0.515]	chr6	269491	100	INTRON	INTRON	PPARD	ENSG00000112033.14	ENST00000418635.6:ENST00000448077.6:ENST00000360694.8:ENST00000311565.4:ENST00000337400.6	protein_coding	protein_coding	protein_coding	protein_coding	13	111	2	1.23271	2.02761	2.82251	0.0397864	6.78359e-4	0.161534	0.023827
chr15	32631610	32631707	5995642	0	+	0.360825	(0.35,0.378]	chr15	569996	15	INTRON	INTRON	ARHGAP11A	ENSG00000198826.11	ENST00000565905.5:ENST00000361627.8:ENST00000567348.5:ENST00000563864.5:ENST00000543522.5:ENST00000562481.1	protein_coding	protein_coding	protein_coding	protein_coding	13	122	2	1.43665	2.027455	2.61826	0.0191129	0.00206992	0.119379	0.0411801
chr1	204557127	204557226	297840	0	+	0.464646	(0.44,0.476]	chr1	34331	76	UTR3	UTR3:EXON_MRNA	MDM4	ENSG00000198625.14	ENST00000367183.7:ENST00000391947.6:ENST00000454264.6:ENST00000612738.4:ENST00000614459.4:ENST00000616250.4:ENST00000367182.8	protein_coding	protein_coding	protein_coding	protein_coding	5	52	2	1.55662	2.027425	2.49823	0.0688347	0.00718224	0.184298	0.0756118
chr21	46426071	46426171	7422278	0	+	0.47	(0.44,0.476]	chr21	756891	1	SS5_PROX	SS5_PROX:INTRON	PCNT	ENSG00000160299.18	ENST00000695558.1:ENST00000359568.10:ENST00000480896.5:ENST00000695527.1:ENST00000695528.1:ENST00000695529.1:ENST00000695530.1:ENST00000418394.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	11	107	2	1.8752	2.02736	2.17952	0.00551887	0.00504991	0.0648867	0.0646039
chr17	82638373	82638473	6853592	0	-	0.46	(0.44,0.476]	chr17	679384	19	INTRON	INTRON	WDR45B	ENSG00000141580.16	ENST00000392325.9:ENST00000572583.5:ENST00000573616.5:ENST00000571817.5:ENST00000574828.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	39	2	1.75627	2.027345	2.29842	0.0552483	0.0380723	0.165463	0.157702
chrX	53542142	53542242	7820362	0	-	0.46	(0.44,0.476]	chrX	797849	3	SS5_PROX	SS5_PROX:INTRON	HUWE1	ENSG00000086758.16	ENST00000262854.11:ENST00000342160.7:ENST00000612484.4:ENST00000426907.5:ENST00000463852.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	39	2	1.75627	2.027345	2.29842	0.0552483	0.0380723	0.165463	0.157702
chr20	49944220	49944316	7285725	0	+	0.479167	(0.476,0.515]	chr20	741192	4	EXON_MRNA	EXON_MRNA:INTRON	RNF114	ENSG00000124226.11	ENST00000623528.3:ENST00000622999.3:ENST00000244061.6:ENST00000625177.3:ENST00000623732.3:ENST00000622920.1:ENST00000624666.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	82	2	1.99457	2.0273399999999997	2.06011	0.009924	0.00869033	0.0877296	0.0788605
chrX	53681194	53681293	7821856	0	-	0.535354	(0.515,0.57]	chrX	798244	1	INTRON	INTRON	HUWE1	ENSG00000086758.16	ENST00000262854.11:ENST00000342160.7:ENST00000218328.12:ENST00000446750.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	45	2	1.8661	2.0273	2.1885	0.0274846	0.0202537	0.123904	0.121364
chr11	47468230	47468330	4949522	0	-	0.51	(0.476,0.515]	chr11	464136	24	UTR3	UTR3:EXON_MRNA	CELF1	ENSG00000149187.19	ENST00000310513.10:ENST00000687097.1:ENST00000395290.6:ENST00000358597.7	protein_coding	protein_coding	protein_coding	protein_coding	28	268	2	1.56276	2.027275	2.49179	0.00645687	5.1359e-5	0.0699605	0.00585477
chr7	139705741	139705841	3658112	0	-	0.28	[0,0.28]	chr7	339537	737	INTRON	INTRON	HIPK2	ENSG00000064393.16	ENST00000406875.8:ENST00000428878.6:ENST00000342645.7	protein_coding	protein_coding	protein_coding	protein_coding	4	63	2	1.89998	2.027275	2.15457	0.0599553	0.0269306	0.169548	0.135288
chr20	50515387	50515487	7285964	0	+	0.33	(0.32,0.35]	chr20	741241	44	INTRON	INTRON	PTPN1	ENSG00000196396.10	ENST00000541713.5:ENST00000371621.5	protein_coding	protein_coding	protein_coding	protein_coding	10	119	2	1.81227	2.027255	2.24224	0.0125937	0.00393422	0.0926667	0.0572563
chr6	18225130	18225228	3068845	0	-	0.326531	(0.32,0.35]	chr6	285167	14	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DEK	ENSG00000124795.17	ENST00000652689.1:ENST00000652292.1:ENST00000651624.1:ENST00000515770.2:ENST00000651992.1:ENST00000507591.2:ENST00000505224.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	84	2	1.98909	2.02721	2.06533	0.0174225	0.0108865	0.10453	0.0923273
chr8	43062226	43062325	3745907	0	+	0.262626	[0,0.28]	chr8	348521	27	INTRON	INTRON	FNTA	ENSG00000168522.13	ENST00000533559.5:ENST00000526755.5:ENST00000302279.8:ENST00000527153.5:ENST00000533383.5:ENST00000533998.5:ENST00000524546.5:ENST00000531266.5:ENST00000533368.1:ENST00000525699.5:ENST00000529687.5:ENST00000533336.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	97	2	1.62448	2.02713	2.42978	0.0302032	0.0149657	0.142761	0.0994339
chr21	32739907	32740006	7440137	0	-	0.313131	(0.28,0.32]	chr21	759205	12	INTRON	INTRON	PAXBP1	ENSG00000159086.15	ENST00000331923.9:ENST00000466846.5:ENST00000443785.5:ENST00000497873.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	77	2	1.51776	2.02712	2.53648	0.0528371	0.00925866	0.178899	0.0817766
chr19	15313140	15313240	7147212	0	-	0.55	(0.515,0.57]	chr19	721965	328	INTRON	INTRON	BRD4	ENSG00000141867.19	ENST00000679869.1:ENST00000360016.9:ENST00000594841.5:ENST00000597315.5:ENST00000601941.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	51	2	1.53845	2.02703	2.51561	0.0475376	0.00635044	0.153019	0.0723103
chr3	33051158	33051257	1650689	0	-	0.474747	(0.44,0.476]	chr3	169237	46	INTRON	INTRON	GLB1	ENSG00000170266.16	ENST00000399402.7:ENST00000307363.10:ENST00000307377.12:ENST00000482097.5:ENST00000485698.5:ENST00000498537.5:ENST00000415454.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	55	2	1.37831	2.027015	2.67572	0.0447298	0.0212064	0.163255	0.113017
chr15	92890108	92890208	6103580	0	+	0.3	(0.28,0.32]	chr15	581369	14	INTRON	INTRON	CHASERR:ENSG00000279765	ENSG00000272888.8:ENSG00000279765.3	ENST00000653163.1:ENST00000557682.6:ENST00000556895.5:ENST00000554894.5:ENST00000629685.2:ENST00000554133.5:ENST00000630790.1:ENST00000555520.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	6	76	2	1.83325	2.02697	2.22069	0.0243177	0.0199548	0.120668	0.12011
chr21	43923809	43923908	7414379	0	+	0.59596	(0.57,1]	chr21	755702	70	INTRON	INTRON	AGPAT3	ENSG00000160216.21	ENST00000291572.13:ENST00000448287.5:ENST00000398061.5:ENST00000327505.6:ENST00000445582.5	protein_coding	protein_coding	protein_coding	protein_coding	4	23	2	1.91937	2.02691	2.13445	0.0468438	0.0241482	0.167716	0.12011
chr13	28145684	28145784	5460900	0	+	0.44	(0.408,0.44]	chr13	523235	62	INTRON	INTRON	PAN3	ENSG00000152520.14	ENST00000503791.5:ENST00000380958.8:ENST00000399613.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	55	2	2.00768	2.026895	2.04611	0.035843	0.016628	0.152216	0.102621
chr8	31141958	31142041	3729040	0	+	0.493976	(0.476,0.515]	chr8	346663	2	SS5_PROX	SS5_PROX:INTRON	WRN	ENSG00000165392.11	ENST00000650667.1:ENST00000298139.7:ENST00000521620.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	66	2	1.32871	2.02689	2.72507	0.0678032	0.0029369	0.184298	0.0496505
chr1	212761290	212761390	634475	0	-	0.52	(0.515,0.57]	chr1	74949	213	INTRON	INTRON	NSL1	ENSG00000117697.15	ENST00000366977.8:ENST00000366978.5:ENST00000366976.3:ENST00000626725.1	protein_coding	protein_coding	protein_coding	protein_coding	9	74	2	1.6151	2.02685	2.4386	0.0189412	0.00326739	0.118428	0.0508595
chr15	66519378	66519478	6050458	0	+	0.25	[0,0.28]	chr15	576140	3	SS5_PROX	SS5_PROX:INTRON	ZWILCH	ENSG00000174442.12	ENST00000535141.6:ENST00000613446.4:ENST00000446801.6:ENST00000565627.5:ENST00000564179.5:ENST00000307897.10:ENST00000565960.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	77	2	1.76483	2.02684	2.28885	0.0483	0.0181093	0.153327	0.114853
chr16	85574445	85574545	6415576	0	+	0.61	(0.57,1]	chr16	615470	177	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	6	34	2	1.67986	2.02676	2.37366	0.0496395	0.00373392	0.174685	0.0535844
chr1	2245407	2245507	2337	0	+	0.41	(0.408,0.44]	chr1	553	124	INTRON	INTRON	SKI	ENSG00000157933.10	ENST00000378536.5:ENST00000508416.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	60	2	1.60344	2.026735	2.45003	0.0387506	0.00990006	0.160156	0.0838372
chr15	41336626	41336725	6004808	0	+	0.424242	(0.408,0.44]	chr15	571290	32	INTRON	INTRON	NUSAP1	ENSG00000137804.14	ENST00000668273.1:ENST00000260359.10:ENST00000558123.5:ENST00000559046.5:ENST00000414849.6:ENST00000450592.6:ENST00000559596.6:ENST00000558582.5:ENST00000560747.5:ENST00000559659.1:ENST00000560177.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	69	2	1.99397	2.02672	2.05947	0.0333232	0.00610802	0.134145	0.0706941
chr19	16615681	16615781	7150347	0	-	0.47	(0.44,0.476]	chr19	722413	282	INTRON	INTRON	MED26	ENSG00000105085.11	ENST00000263390.8:ENST00000611692.4:ENST00000598608.1:ENST00000601478.1:ENST00000600060.1	protein_coding	protein_coding	protein_coding	protein_coding	8	73	2	1.3156	2.026705	2.73781	0.0578352	0.00276493	0.167723	0.04867
chr1	16333694	16333794	382432	0	-	0.36	(0.35,0.378]	chr1	44888	179	INTRON	INTRON	FBXO42	ENSG00000037637.11	ENST00000375592.8	protein_coding	protein_coding	protein_coding	protein_coding	6	54	2	1.38772	2.026595	2.66547	0.0555481	0.0233639	0.18407	0.118323
chr11	68500352	68500452	4817729	0	+	0.45	(0.44,0.476]	chr11	448907	392	INTRON	INTRON	PPP6R3	ENSG00000110075.15	ENST00000530427.5:ENST00000528635.5:ENST00000529907.5:ENST00000533127.5:ENST00000534534.5:ENST00000529344.5:ENST00000524845.5:ENST00000393800.7:ENST00000265637.8:ENST00000524904.5:ENST00000393801.7:ENST00000265636.9:ENST00000529710.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	66	2	1.66775	2.02647	2.38519	0.0219883	0.012193	0.123836	0.0910127
chr16	89407854	89407954	6542767	0	-	0.26	[0,0.28]	chr16	634254	37	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000647238.1:ENST00000644045.1:ENST00000643147.1:ENST00000644139.1:ENST00000568512.6:ENST00000566973.1:ENST00000562211.2:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	13	180	2	1.19393	2.0264699999999998	2.85901	0.0700045	3.12713e-4	0.184298	0.0159015
chr1	52823498	52823596	104864	0	+	0.285714	(0.28,0.32]	chr1	13715	20	UTR3	UTR3:EXON_MRNA	ZYG11B	ENSG00000162378.13	ENST00000294353.7	protein_coding	protein_coding	protein_coding	protein_coding	4	55	2	1.76293	2.026455	2.28998	0.0766478	0.0166401	0.196164	0.110511
chr7	156872174	156872274	3687808	0	-	0.31	(0.28,0.32]	chr7	342096	349	INTRON	INTRON	LMBR1	ENSG00000105983.23	ENST00000353442.10:ENST00000415428.5:ENST00000454132.5:ENST00000434503.5:ENST00000430278.5:ENST00000434278.5:ENST00000444719.5:ENST00000461469.5:ENST00000414218.1:ENST00000434453.1:ENST00000498034.5:ENST00000433968.5:ENST00000485985.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	55	2	1.76293	2.026455	2.28998	0.0766478	0.0166401	0.196164	0.110511
chr3	101681582	101681673	1758889	0	-	0.582418	(0.57,1]	chr3	178423	5	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	RPL24	ENSG00000114391.13	ENST00000394077.8:ENST00000464595.1:ENST00000495401.5:ENST00000488288.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	21	2	1.52865	2.02635	2.52405	0.0730445	0.0263139	0.189414	0.133676
chr8	11861199	11861299	3908789	0	-	0.58	(0.57,1]	chr8	358206	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	CTSB	ENSG00000164733.22	ENST00000677671.1:ENST00000678092.1:ENST00000679128.1:ENST00000677873.1:ENST00000676691.1:ENST00000678598.1:ENST00000353047.11:ENST00000677650.1:ENST00000526481.7:ENST00000676825.1:ENST00000678242.1:ENST00000677366.1:ENST00000677544.1:ENST00000530640.7:ENST00000677418.1:ENST00000677047.1:ENST00000676502.1:ENST00000531089.6:ENST00000678629.1:ENST00000678145.1:ENST00000678929.1:ENST00000677819.1:ENST00000677415.1:ENST00000678357.1:ENST00000676755.1:ENST00000679051.1:ENST00000453527.7:ENST00000678067.1:ENST00000679140.1:ENST00000677082.1:ENST00000533455.6:ENST00000531551.5:ENST00000534382.6:ENST00000679214.1:ENST00000531502.6:ENST00000534510.6:ENST00000677865.1:ENST00000533572.6:ENST00000345125.8:ENST00000526645.6:ENST00000534149.6:ENST00000505496.7:ENST00000532392.2:ENST00000676843.1:ENST00000524500.6:ENST00000525076.6:ENST00000527215.7:ENST00000528965.2:ENST00000532656.7:ENST00000526195.6:ENST00000678615.1:ENST00000527243.6:ENST00000530296.6:ENST00000534636.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	21	2	1.52865	2.02635	2.52405	0.0730445	0.0263139	0.189414	0.133676
chr17	75377890	75377990	6837520	0	-	0.39	(0.378,0.408]	chr17	675716	447	INTRON	INTRON	GRB2	ENSG00000177885.15	ENST00000316615.9:ENST00000316804.10:ENST00000392562.5:ENST00000392564.5:ENST00000392563.5:ENST00000648046.1:ENST00000578961.5:ENST00000582582.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	55	2	1.65821	2.026325	2.39444	0.0506302	0.0122858	0.17547	0.091087
chr1	36059135	36059235	72452	0	+	0.3	(0.28,0.32]	chr1	9249	35	UTR3	UTR3:EXON_MRNA	AGO3	ENSG00000126070.20	ENST00000373191.9	protein_coding	protein_coding	protein_coding	protein_coding	4	55	2	1.91611	2.02631	2.13651	0.0539102	0.0265696	0.164153	0.134088
chr15	85015626	85015726	6089268	0	+	0.3	(0.28,0.32]	chr15	579504	329	INTRON	INTRON	PDE8A	ENSG00000073417.15	ENST00000310298.8:ENST00000557957.5:ENST00000394553.6:ENST00000339708.9:ENST00000478717.5:ENST00000485596.5:ENST00000559742.5:ENST00000559086.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	55	2	1.91611	2.02631	2.13651	0.0539102	0.0265696	0.164153	0.134088
chr2	53705313	53705412	1117881	0	-	0.30303	(0.28,0.32]	chr2	119764	44	INTRON	INTRON	ASB3	ENSG00000115239.24	ENST00000406053.5:ENST00000263634.8:ENST00000406625.6:ENST00000482829.5:ENST00000394717.3:ENST00000406687.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	55	2	1.91611	2.02631	2.13651	0.0539102	0.0265696	0.164153	0.134088
chr3	40534488	40534588	1402566	0	+	0.32	(0.28,0.32]	chr3	147394	15	UTR3	UTR3:EXON_MRNA:INTRON	ZNF621	ENSG00000172888.12	ENST00000310898.5:ENST00000339296.10:ENST00000490457.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	55	2	1.91611	2.02631	2.13651	0.0539102	0.0265696	0.164153	0.134088
chr6	10897710	10897810	2811850	0	+	0.4	(0.378,0.408]	chr6	264557	3	SS3_PROX	SS3_PROX:INTRON	SYCP2L	ENSG00000153157.13	ENST00000341041.8:ENST00000283141.11:ENST00000543878.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	95	2	1.76455	2.02624	2.28793	0.0180091	0.00291235	0.106756	0.0494641
chr19	15326136	15326236	7147342	0	-	0.45	(0.44,0.476]	chr19	721965	458	INTRON	INTRON	BRD4	ENSG00000141867.19	ENST00000679869.1:ENST00000360016.9:ENST00000594841.5:ENST00000597315.5:ENST00000601941.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	13	122	2	1.84524	2.0261899999999997	2.20714	0.00493236	0.00350326	0.061186	0.0544558
chr19	15282150	15282250	7146902	0	-	0.39	(0.378,0.408]	chr19	721965	18	INTRON	INTRON	BRD4	ENSG00000141867.19	ENST00000679869.1:ENST00000360016.9:ENST00000594841.5:ENST00000597315.5:ENST00000601941.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	70	2	1.88928	2.026155	2.16303	0.0252473	0.00958693	0.12011	0.0866052
chr1	179127958	179128056	592056	0	-	0.510204	(0.476,0.515]	chr1	71061	9	INTRON	INTRON	ABL2	ENSG00000143322.21	ENST00000502732.6:ENST00000344730.7:ENST00000512653.5:ENST00000367623.8:ENST00000507173.5:ENST00000511413.5:ENST00000504405.5:ENST00000668691.1:ENST00000392043.4:ENST00000509520.5:ENST00000504324.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	52	2	1.79187	2.026105	2.26034	0.0362169	0.0166235	0.138959	0.110511
chr7	102653979	102654079	3589060	0	-	0.53	(0.515,0.57]	chr7	335089	113	INTRON	INTRON	ENSG00000267645	ENSG00000267645.5	ENST00000476151.5	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	15	127	2	1.88115	2.02601	2.17087	0.00389118	0.00101917	0.0544902	0.0293964
chr18	261081	261162	6938970	0	-	0.271605	[0,0.28]	chr18	686310	5	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	THOC1	ENSG00000079134.13	ENST00000261600.11:ENST00000579232.5:ENST00000580038.5:ENST00000578529.5:ENST00000631280.2:ENST00000582313.5:ENST00000581269.5:ENST00000581116.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	76	2	2.02265	2.02597	2.02929	0.0449017	0.0189138	0.149888	0.118303
chr1	11945643	11945740	26095	0	+	0.329897	(0.32,0.35]	chr1	2955	6	INTRON	INTRON	PLOD1	ENSG00000083444.17	ENST00000485046.5:ENST00000449038.5:ENST00000196061.5:ENST00000358133.5:ENST00000429000.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	45	2	1.67393	2.025935	2.37794	0.0498601	0.0496128	0.174685	0.156383
chr2	224530391	224530490	1335786	0	-	0.333333	(0.32,0.35]	chr2	140141	153	INTRON	INTRON	CUL3	ENSG00000036257.14	ENST00000344951.8:ENST00000264414.9:ENST00000409096.5:ENST00000409777.5:ENST00000541548.5:ENST00000432260.2:ENST00000436172.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	45	2	1.67393	2.025935	2.37794	0.0498601	0.0496128	0.174685	0.156383
chr4	153587341	153587441	2068478	0	+	0.34	(0.32,0.35]	chr4	204633	2	SS3_PROX	SS3_PROX:INTRON	TMEM131L	ENSG00000121210.16	ENST00000409663.7:ENST00000409959.8:ENST00000240487.5	protein_coding	protein_coding	protein_coding	protein_coding	4	45	2	1.67393	2.025935	2.37794	0.0498601	0.0496128	0.174685	0.156383
chr7	10715709	10715809	3483937	0	-	0.35	(0.32,0.35]	chr7	325772	1538	INTRON	INTRON	MGC4859	ENSG00000283117.1	ENST00000634803.1	lncRNA	lncRNA	lncRNA	lncRNA	4	45	2	1.67393	2.025935	2.37794	0.0498601	0.0496128	0.174685	0.156383
chrX	85088271	85088370	7689106	0	+	0.282828	(0.28,0.32]	chrX	787124	7	UTR3	UTR3:EXON_MRNA	APOOL	ENSG00000155008.16	ENST00000373173.7	protein_coding	protein_coding	protein_coding	protein_coding	8	102	2	1.90237	2.0258950000000002	2.14942	0.0143412	0.0104138	0.0966737	0.0901622
chr9	97997262	97997361	4173179	0	+	0.272727	[0,0.28]	chr9	380275	21	INTRON	INTRON	ANP32B	ENSG00000136938.9	ENST00000339399.5:ENST00000473205.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	76	2	1.88025	2.02587	2.17149	0.0308079	0.029906	0.142135	0.13151
chr11	62871250	62871337	4799480	0	+	0.551724	(0.515,0.57]	chr11	444787	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SLC3A2	ENSG00000168003.18	ENST00000680729.1:ENST00000680002.1:ENST00000681467.1:ENST00000377890.6:ENST00000538084.2:ENST00000681569.1:ENST00000680725.1:ENST00000377891.6:ENST00000377889.6:ENST00000681215.1:ENST00000535296.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	37	2	1.79136	2.02574	2.26012	0.0638444	0.0160033	0.177811	0.109464
chr18	46096739	46096838	6965489	0	-	0.525253	(0.515,0.57]	chr18	689416	12	INTRON	INTRON	ATP5F1A	ENSG00000152234.16	ENST00000398752.11:ENST00000282050.6:ENST00000593152.6:ENST00000586592.5:ENST00000590665.5:ENST00000590156.5:ENST00000592364.5:ENST00000589252.5:ENST00000589869.5:ENST00000590406.5:ENST00000590324.5:ENST00000590448.5:ENST00000592989.1:ENST00000591981.5:ENST00000585650.1:ENST00000591267.1:ENST00000588390.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	37	2	1.79136	2.02574	2.26012	0.0638444	0.0160033	0.177811	0.109464
chr7	107561606	107561706	3613009	0	-	0.54	(0.515,0.57]	chr7	336728	31	INTRON	INTRON	COG5	ENSG00000164597.15	ENST00000297135.9:ENST00000347053.8:ENST00000393603.7:ENST00000605888.1	protein_coding	protein_coding	protein_coding	protein_coding	4	37	2	1.79136	2.02574	2.26012	0.0638444	0.0160033	0.177811	0.109464
chrX	123987479	123987579	7717010	0	+	0.52	(0.515,0.57]	chrX	789462	237	INTRON	INTRON	STAG2	ENSG00000101972.20	ENST00000394477.5:ENST00000218089.13:ENST00000455404.5:ENST00000483575.5:ENST00000687810.1:ENST00000687071.1:ENST00000469481.1:ENST00000458700.5:ENST00000371160.5:ENST00000435103.5:ENST00000687852.1:ENST00000371145.8:ENST00000692982.1:ENST00000371157.7:ENST00000691035.1:ENST00000686802.1:ENST00000691383.1:ENST00000686127.1:ENST00000371144.7:ENST00000458176.5:ENST00000466748.5:ENST00000471107.1:ENST00000428941.5:ENST00000435215.5:ENST00000394478.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	37	2	1.79136	2.02574	2.26012	0.0638444	0.0160033	0.177811	0.109464
chr22	29290219	29290315	7496288	0	+	0.479167	(0.476,0.515]	chr22	764836	13	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	EWSR1	ENSG00000182944.18	ENST00000629659.2:ENST00000332050.10:ENST00000397938.7:ENST00000406548.5:ENST00000331029.11:ENST00000483415.5:ENST00000414183.6:ENST00000333395.10:ENST00000332035.10:ENST00000479135.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	18	177	2	1.61935	2.025735	2.43212	0.0100735	1.88149e-4	0.0849957	0.011951
chr22	49652426	49652526	7602612	0	-	0.52	(0.515,0.57]	chr22	778594	250	INTRON	INTRON	MIR3667HG	ENSG00000188511.13	ENST00000414287.5:ENST00000416411.1:ENST00000689875.1:ENST00000400023.5:ENST00000405854.5	lncRNA	lncRNA	lncRNA	lncRNA	15	128	2	1.86278	2.0257	2.18862	0.00367957	0.00113408	0.0561162	0.0307488
chr15	61853963	61854062	6196033	0	-	0.515152	(0.476,0.515]	chr15	590477	17	UTR3	UTR3:EXON_MRNA	VPS13C	ENSG00000129003.19	ENST00000249837.7:ENST00000644861.2:ENST00000560637.5:ENST00000650094.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	110	2	1.94021	2.0256499999999997	2.11109	0.00523626	0.00438713	0.0656295	0.0585064
chr1	21755947	21756045	396593	0	-	0.520408	(0.515,0.57]	chr1	47332	25	INTRON	INTRON	USP48	ENSG00000090686.16	ENST00000400301.5:ENST00000308271.14:ENST00000529637.5:ENST00000421625.6:ENST00000527823.5:ENST00000532737.1	protein_coding	protein_coding	protein_coding	protein_coding	7	57	2	1.77888	2.02563	2.27238	0.0161808	0.0139834	0.10247	0.101453
chr12	91379836	91379936	5383010	0	-	0.38	(0.378,0.408]	chr12	513463	95	INTRON	INTRON	ENSG00000289605	ENSG00000289605.1	ENST00000685093.1	lncRNA	lncRNA	lncRNA	lncRNA	6	63	2	1.45712	2.02546	2.5938	0.0597975	0.00614976	0.189982	0.0676501
chr17	16016712	16016811	6560713	0	+	0.494949	(0.476,0.515]	chr17	637699	98	INTRON	INTRON	TTC19	ENSG00000011295.16	ENST00000475723.5:ENST00000261647.10:ENST00000497842.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	59	2	1.63962	2.025415	2.41121	0.0346854	0.0110342	0.148144	0.0873897
chr18	36918404	36918504	6893730	0	+	0.47	(0.44,0.476]	chr18	683221	321	INTRON	INTRON	KIAA1328	ENSG00000150477.15	ENST00000592611.5:ENST00000280020.10:ENST00000590617.5:ENST00000587139.5:ENST00000591619.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	60	2	1.96805	2.02541	2.08277	0.0309998	0.0109533	0.13151	0.0925675
chr1	90995162	90995262	502259	0	-	0.2	[0,0.28]	chr1	59504	124	INTRON	INTRON	ZNF644	ENSG00000122482.22	ENST00000370440.5:ENST00000337393.10:ENST00000347275.9:ENST00000361321.5:ENST00000467231.5:ENST00000498303.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	46	2	1.84147	2.02537	2.20927	0.0794763	0.0610416	0.19979	0.193277
chr1	150394509	150394609	222000	0	+	0.28	[0,0.28]	chr1	25051	292	INTRON	INTRON	RPRD2	ENSG00000163125.16	ENST00000492220.1:ENST00000369068.5:ENST00000401000.8:ENST00000369067.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	46	2	1.84147	2.02537	2.20927	0.0794763	0.0610416	0.19979	0.193277
chr2	99429439	99429539	1189258	0	-	0.26	[0,0.28]	chr2	127653	2	SS5_PROX	SS5_PROX:INTRON	REV1	ENSG00000135945.10	ENST00000393445.7:ENST00000258428.8:ENST00000413697.5:ENST00000465835.5:ENST00000450415.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	46	2	1.84147	2.02537	2.20927	0.0794763	0.0610416	0.19979	0.193277
chrX	18518343	18518443	7627806	0	+	0.2	[0,0.28]	chrX	781024	71	INTRON	INTRON	CDKL5	ENSG00000008086.13	ENST00000379996.7:ENST00000623535.2:ENST00000674046.1:ENST00000635828.1:ENST00000637881.1:ENST00000379989.6:ENST00000623364.3:ENST00000624700.3:ENST00000463994.4	protein_coding	protein_coding	protein_coding	protein_coding	3	46	2	1.84147	2.02537	2.20927	0.0794763	0.0610416	0.19979	0.193277
chr5	150739114	150739214	2751699	0	-	0.37	(0.35,0.378]	chr5	259259	24	INTRON	INTRON	DCTN4	ENSG00000132912.13	ENST00000447998.7:ENST00000424236.5:ENST00000446090.6:ENST00000627368.2:ENST00000521728.5:ENST00000519313.5:ENST00000518015.5:ENST00000521448.5:ENST00000521533.1:ENST00000521093.1:ENST00000517421.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	87	2	1.91549	2.025365	2.13524	0.0130865	0.00887698	0.0934394	0.0849778
chr16	16525109	16525209	6311113	0	+	0.28	[0,0.28]	chr16	604098	251	INTRON	INTRON	ENSG00000260126	ENSG00000260126.2	ENST00000567465.2	lncRNA	lncRNA	lncRNA	lncRNA	8	111	2	1.48998	2.0253550000000002	2.56073	0.0441863	0.00743095	0.149888	0.0772645
chr6	15269550	15269650	2823181	0	+	0.35	(0.32,0.35]	chr6	265190	202	INTRON	INTRON	JARID2	ENSG00000008083.14	ENST00000341776.7:ENST00000397311.4	protein_coding	protein_coding	protein_coding	protein_coding	7	85	2	1.42542	2.0252749999999997	2.62513	0.0718205	0.00156724	0.187046	0.0365592
chr1	229537765	229537864	653557	0	-	0.333333	(0.32,0.35]	chr1	77458	27	INTRON	INTRON	ABCB10	ENSG00000135776.5	ENST00000344517.5	protein_coding	protein_coding	protein_coding	protein_coding	9	91	2	1.38748	2.0252499999999998	2.66302	0.0373731	0.00542632	0.155878	0.0645052
chr10	124769692	124769792	4712323	0	-	0.52	(0.515,0.57]	chr10	434810	37	INTRON	INTRON	EEF1AKMT2	ENSG00000203791.15	ENST00000652548.1:ENST00000466270.5:ENST00000368836.7:ENST00000464099.5:ENST00000498770.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	62	2	1.811	2.0251349999999997	2.23927	0.0325989	0.00328621	0.133687	0.0527031
chr2	24502588	24502688	709370	0	+	0.37	(0.35,0.378]	chr2	82200	100	INTRON	INTRON	NCOA1	ENSG00000084676.16	ENST00000348332.8:ENST00000496333.5:ENST00000406961.5:ENST00000469850.5:ENST00000405141.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	42	2	1.65083	2.0251099999999997	2.39939	0.0521072	0.0458078	0.177022	0.149888
chr14	30959606	30959705	5857204	0	-	0.333333	(0.32,0.35]	chr14	556504	30	INTRON	INTRON	STRN3	ENSG00000196792.12	ENST00000355683.9:ENST00000357479.10:ENST00000555358.5:ENST00000555152.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	74	2	1.20203	2.025075	2.84812	0.0583213	0.0147575	0.189131	0.0983813
chr1	14776853	14776943	380397	0	-	0.511111	(0.476,0.515]	chr1	44599	8	INTRON	INTRON	ENSG00000287756	ENSG00000287756.1	ENST00000666715.1	lncRNA	lncRNA	lncRNA	lncRNA	6	60	2	1.67283	2.02507	2.37731	0.0332283	0.0111793	0.134145	0.0937192
chr3	128883313	128883408	1498264	0	+	0.389474	(0.378,0.408]	chr3	156401	3	UTR5	UTR5:EXON_MRNA:INTRON	ACAD9	ENSG00000177646.20	ENST00000681583.1:ENST00000681367.1:ENST00000679613.1:ENST00000505602.1:ENST00000514643.5:ENST00000680636.1:ENST00000511325.2:ENST00000681319.1:ENST00000681585.1:ENST00000681784.1:ENST00000308982.12:ENST00000512801.5:ENST00000679399.1:ENST00000681552.1:ENST00000511227.5:ENST00000505192.5:ENST00000679990.1:ENST00000514336.1:ENST00000515429.1:ENST00000681886.1:ENST00000679431.1:ENST00000680764.1:ENST00000505867.5:ENST00000680744.1:ENST00000679824.1:ENST00000681589.1:ENST00000679715.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	76	2	1.71374	2.024965	2.33619	0.0274158	0.00607113	0.136498	0.0676501
chr15	66502311	66502411	6210636	0	-	0.28	[0,0.28]	chr15	592731	5	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPL4	ENSG00000174444.15	ENST00000307961.11:ENST00000567229.5:ENST00000568588.5:ENST00000561775.5:ENST00000569696.5:ENST00000564647.5:ENST00000566039.5:ENST00000564439.5:ENST00000566622.5:ENST00000569438.2:ENST00000566624.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	117	2	1.75741	2.02494	2.29247	0.0424454	0.00608041	0.161763	0.0676501
chr16	89455988	89456087	6543256	0	-	0.484848	(0.476,0.515]	chr16	634281	243	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	12	92	2	1.17577	2.024915	2.87406	0.0484597	0.00188729	0.172506	0.0391691
chr18	9110461	9110561	6868671	0	+	0.35	(0.32,0.35]	chr18	680510	51	INTRON	INTRON	NDUFV2	ENSG00000178127.13	ENST00000577703.1:ENST00000318388.11:ENST00000583375.5:ENST00000400033.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	34	401	2	1.67104	2.0249	2.37876	0.00629907	4.60694e-5	0.0687526	0.00552588
chr1	11803976	11804069	378929	0	-	0.451613	(0.44,0.476]	chr1	44489	6	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	MTHFR	ENSG00000177000.13	ENST00000376590.9:ENST00000376592.6:ENST00000376585.6:ENST00000641747.1:ENST00000641446.1:ENST00000376486.3:ENST00000641437.1:ENST00000418034.1:ENST00000431243.6:ENST00000642002.1:ENST00000413656.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	43	2	1.83899	2.02489	2.21079	0.0589734	0.0194581	0.167915	0.119831
chr1	19091730	19091828	385511	0	-	0.387755	(0.378,0.408]	chr1	45644	24	INTRON	INTRON	UBR4	ENSG00000127481.15	ENST00000375254.8:ENST00000375224.1	protein_coding	protein_coding	protein_coding	protein_coding	5	54	2	1.8374	2.02489	2.21238	0.0299228	0.0218124	0.142135	0.11491
chr1	173997020	173997119	587791	0	-	0.464646	(0.44,0.476]	chr1	70758	35	INTRON	INTRON	RC3H1	ENSG00000135870.12	ENST00000367696.7	protein_coding	protein_coding	protein_coding	protein_coding	8	83	2	1.92704	2.024835	2.12263	0.0128054	0.00692375	0.0990564	0.0718189
chr5	180576081	180576180	2562694	0	+	0.313131	(0.28,0.32]	chr5	245145	20	UTR3	UTR3:EXON_MRNA	CNOT6	ENSG00000113300.13	ENST00000261951.9:ENST00000393356.7:ENST00000618123.4	protein_coding	protein_coding	protein_coding	protein_coding	6	81	2	1.98806	2.0248150000000003	2.06157	0.0199553	0.0189458	0.120668	0.108861
chr1	10062443	10062543	19421	0	+	0.46	(0.44,0.476]	chr1	1838	284	INTRON	INTRON	UBE4B	ENSG00000130939.20	ENST00000672724.1:ENST00000253251.12:ENST00000343090.11:ENST00000377153.5	protein_coding	protein_coding	protein_coding	protein_coding	4	43	2	1.9039	2.024815	2.14573	0.0501498	0.0238593	0.156383	0.129075
chr2	134928265	134928365	872332	0	+	0.45	(0.44,0.476]	chr2	97663	80	INTRON	INTRON	CCNT2	ENSG00000082258.13	ENST00000419781.5:ENST00000446247.5:ENST00000264157.10:ENST00000452839.5:ENST00000295238.10:ENST00000475094.1:ENST00000417175.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	43	2	1.9039	2.024815	2.14573	0.0501498	0.0238593	0.156383	0.129075
chr12	116196375	116196475	5424735	0	-	0.38	(0.378,0.408]	chr12	518271	152	INTRON	INTRON	MED13L	ENSG00000123066.9	ENST00000281928.9:ENST00000650226.1:ENST00000548743.2:ENST00000647567.1:ENST00000551197.2	protein_coding	protein_coding	protein_coding	protein_coding	10	106	2	1.67662	2.02477	2.37292	0.0243251	0.00105162	0.12011	0.0299022
chr3	6530134	6530234	1356542	0	+	0.29	(0.28,0.32]	chr3	142508	170	INTRON	INTRON	ENSG00000189229	ENSG00000189229.12	ENST00000660158.1:ENST00000433639.1:ENST00000655754.1:ENST00000653839.1:ENST00000662846.1:ENST00000659876.1:ENST00000414438.2:ENST00000658468.1:ENST00000414603.1:ENST00000669512.1:ENST00000667028.1:ENST00000655541.1:ENST00000668643.1:ENST00000671568.1:ENST00000671036.1:ENST00000669798.1:ENST00000655753.1:ENST00000655856.1:ENST00000658398.1:ENST00000661518.1:ENST00000661279.1:ENST00000655495.1:ENST00000663041.1:ENST00000659827.1:ENST00000667716.1:ENST00000662508.1:ENST00000668416.1:ENST00000658133.1:ENST00000659651.1:ENST00000342990.4:ENST00000660054.1:ENST00000671370.1	lncRNA	lncRNA	lncRNA	lncRNA	9	112	2	1.2552	2.024765	2.79433	0.0765217	8.00952e-4	0.196163	0.0258804
chr12	130802886	130802986	5447888	0	-	0.43	(0.408,0.44]	chr12	521542	10	INTRON	INTRON	STX2	ENSG00000111450.14	ENST00000261653.10:ENST00000392373.7:ENST00000344271.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	108	2	1.95132	2.02475	2.09818	0.00772939	0.0035362	0.0757122	0.0546236
chr6	12064113	12064213	2814747	0	+	0.27	[0,0.28]	chr6	264800	250	INTRON	INTRON	HIVEP1	ENSG00000095951.17	ENST00000491710.5:ENST00000487103.5:ENST00000379388.7:ENST00000627968.2:ENST00000541134.5:ENST00000442081.6:ENST00000478545.1	protein_coding	protein_coding	protein_coding	protein_coding	6	88	2	1.52461	2.02475	2.52489	0.0624132	0.0084136	0.175466	0.082518
chr2	202285278	202285377	985116	0	+	0.434343	(0.408,0.44]	chr2	105736	4	INTRON	INTRON	NOP58	ENSG00000055044.11	ENST00000264279.10:ENST00000492688.5:ENST00000478941.1:ENST00000433543.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	63	2	1.74108	2.02473	2.30838	0.0424099	0.00547703	0.148082	0.0671198
chr10	94570689	94570788	4499871	0	+	0.373737	(0.35,0.378]	chr10	414247	16	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	HELLS	ENSG00000119969.15	ENST00000239026.10:ENST00000371332.8:ENST00000348459.10:ENST00000419900.5:ENST00000394036.5:ENST00000394045.5:ENST00000462057.2:ENST00000466552.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	44	2	1.56287	2.02472	2.48657	0.0697648	0.032907	0.184298	0.145164
chr16	85211262	85211362	6411941	0	+	0.36	(0.35,0.378]	chr16	615455	260	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	4	44	2	1.56287	2.02472	2.48657	0.0697648	0.032907	0.184298	0.145164
chr5	95793174	95793267	2431879	0	+	0.354839	(0.35,0.378]	chr5	233706	1	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	RHOBTB3	ENSG00000164292.13	ENST00000379982.8:ENST00000504179.5:ENST00000503737.1:ENST00000513091.1:ENST00000514198.1	protein_coding	protein_coding	protein_coding	protein_coding	11	96	2	1.25459	2.024655	2.79472	0.0424154	0.00303911	0.161763	0.0493883
chr7	65380950	65381049	3322521	0	+	0.343434	(0.32,0.35]	chr7	308923	66	INTRON	INTRON	ZNF92	ENSG00000146757.14	ENST00000357512.3:ENST00000488849.1:ENST00000431504.1:ENST00000328747.12:ENST00000450302.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	62	2	1.8526	2.02464	2.19668	0.0332438	0.021398	0.134145	0.123719
chr3	100300602	100300698	1465976	0	+	0.53125	(0.515,0.57]	chr3	153645	9	INTRON	INTRON	TBC1D23	ENSG00000036054.13	ENST00000394144.9:ENST00000344949.9:ENST00000486274.5:ENST00000475134.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	61	2	1.77795	2.024555	2.27116	0.0222234	0.00601759	0.116128	0.0700813
chr11	111859474	111859569	5042662	0	-	0.347368	(0.32,0.35]	chr11	474971	14	INTRON	INTRON	ALG9	ENSG00000086848.15	ENST00000616540.5:ENST00000614444.4:ENST00000619129.4:ENST00000398006.6:ENST00000531154.5:ENST00000530851.6:ENST00000613181.4:ENST00000618252.1:ENST00000612489.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	61	2	1.94202	2.024485	2.10695	0.0486128	0.0127483	0.153946	0.0987441
chr6	147682931	147683031	2990825	0	+	0.3	(0.28,0.32]	chr6	280163	64	INTRON	INTRON	ENSG00000227681	ENSG00000227681.5	ENST00000427015.1:ENST00000432506.5:ENST00000442094.5	lncRNA	lncRNA	lncRNA	lncRNA	5	67	2	1.86684	2.02448	2.18212	0.0605813	0.010265700000000001	0.171122	0.089002
chr14	31002460	31002559	5857634	0	-	0.424242	(0.408,0.44]	chr14	556508	381	INTRON	INTRON	STRN3	ENSG00000196792.12	ENST00000355683.9:ENST00000357479.10:ENST00000555358.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	114	2	1.64167	2.02446	2.40725	0.0266976	4.98683e-4	0.123349	0.0202133
chr7	156865276	156865376	3687739	0	-	0.26	[0,0.28]	chr7	342096	280	INTRON	INTRON	LMBR1	ENSG00000105983.23	ENST00000353442.10:ENST00000415428.5:ENST00000454132.5:ENST00000434503.5:ENST00000430278.5:ENST00000434278.5:ENST00000444719.5:ENST00000461469.5:ENST00000414218.1:ENST00000434453.1:ENST00000498034.5:ENST00000433968.5:ENST00000485985.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	93	2	1.99345	2.02446	2.05547	0.0218514	0.0211881	0.123133	0.11491
chr15	22570865	22570963	5975307	0	+	0.265306	[0,0.28]	chr15	568203	12	INTRON	INTRON	HERC2P2	ENSG00000276550.5	ENST00000613386.4:ENST00000619021.4	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	14	208	2	1.88688	2.02445	2.16202	0.0103319	0.00212824	0.0850389	0.042725
chr1	65286189	65286289	135855	0	+	0.35	(0.32,0.35]	chr1	15346	209	INTRON	INTRON	DNAJC6	ENSG00000116675.16	ENST00000463018.5:ENST00000494710.6:ENST00000263441.11:ENST00000395325.7:ENST00000483402.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	135	2	1.58023	2.02444	2.46865	0.0155051	0.00208956	0.109094	0.0412264
chr2	43952296	43952396	1110168	0	-	0.35	(0.32,0.35]	chr2	119070	13	INTRON	INTRON	LRPPRC	ENSG00000138095.20	ENST00000260665.12:ENST00000682308.1:ENST00000683459.1:ENST00000683623.1:ENST00000683125.1:ENST00000683994.1:ENST00000684619.1:ENST00000683833.1:ENST00000682546.1:ENST00000682585.1:ENST00000683220.1:ENST00000683796.1:ENST00000682607.1:ENST00000683590.1:ENST00000684306.1:ENST00000683213.1:ENST00000682779.1:ENST00000682885.1:ENST00000684743.1:ENST00000683346.1:ENST00000683072.1:ENST00000682303.1:ENST00000683329.1:ENST00000682933.1:ENST00000684383.1:ENST00000682480.1:ENST00000684290.1:ENST00000684341.1:ENST00000682595.1:ENST00000683645.1:ENST00000683802.1:ENST00000681961.1:ENST00000683694.1:ENST00000683989.1:ENST00000447246.2:ENST00000409659.6:ENST00000682104.1:ENST00000683934.1:ENST00000681959.1:ENST00000684482.1:ENST00000683082.1:ENST00000467058.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	71	2	1.64353	2.024415	2.4053	0.0398512	0.0108284	0.143072	0.0920575
chr16	75015867	75015967	6389587	0	+	0.39	(0.378,0.408]	chr16	614482	131	INTRON	INTRON	ZNRF1	ENSG00000186187.12	ENST00000335325.9:ENST00000320619.10:ENST00000567962.5:ENST00000566250.5:ENST00000564320.1:ENST00000568511.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	95	2	1.7927	2.02435	2.256	0.0163057	0.00336115	0.101571	0.0532154
chr8	123354501	123354600	4042203	0	-	0.525253	(0.515,0.57]	chr8	368721	47	INTRON	INTRON	ATAD2	ENSG00000156802.13	ENST00000287394.10:ENST00000517666.5:ENST00000521903.5:ENST00000519124.5:ENST00000521496.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	74	2	1.57405	2.024275	2.4745	0.0221119	0.00279583	0.123903	0.0469265
chr17	30748535	30748635	6589973	0	+	0.4	(0.378,0.408]	chr17	640860	48	INTRON	INTRON	SUZ12P1	ENSG00000264538.7	ENST00000578070.5:ENST00000579526.5:ENST00000690405.1:ENST00000497969.6:ENST00000578195.6:ENST00000582557.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	6	65	2	1.90812	2.024205	2.14029	0.0264295	0.0106742	0.122506	0.0917199
chr2	222908772	222908872	1021695	0	+	0.28	[0,0.28]	chr2	109282	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA:INTRON	ACSL3	ENSG00000123983.15	ENST00000392066.7:ENST00000407441.5:ENST00000680251.1:ENST00000679541.1:ENST00000681906.1:ENST00000679545.1:ENST00000679932.1:ENST00000680100.1:ENST00000680475.1:ENST00000680525.1:ENST00000680420.1:ENST00000681326.1:ENST00000681292.1:ENST00000681017.1:ENST00000680382.1:ENST00000535678.2:ENST00000680395.1:ENST00000680736.1:ENST00000679546.1:ENST00000680147.1:ENST00000357430.8:ENST00000681009.1:ENST00000679514.1:ENST00000681697.1:ENST00000680921.1:ENST00000681383.1:ENST00000413316.1:ENST00000679558.1:ENST00000680684.1:ENST00000680424.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	65	2	1.60593	2.024175	2.44242	0.0491024	0.0433625	0.162255	0.155269
chr1	54392970	54393070	463627	0	-	0.49	(0.476,0.515]	chr1	55784	363	INTRON	INTRON	SSBP3	ENSG00000157216.16	ENST00000610401.5:ENST00000357475.9:ENST00000371319.8:ENST00000417664.7:ENST00000533946.6:ENST00000371320.8:ENST00000525990.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	53	2	1.79693	2.024155	2.25138	0.0649782	0.00692374	0.179417	0.0753208
chr11	46842125	46842225	4948725	0	-	0.46	(0.44,0.476]	chr11	463857	154	INTRON	INTRON	CKAP5	ENSG00000175216.15	ENST00000529230.6:ENST00000312055.9:ENST00000525248.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	52	2	1.96602	2.0240650000000002	2.08211	0.0426807	0.0130715	0.148082	0.0996047
chr13	98563794	98563894	5643660	0	-	0.47	(0.44,0.476]	chr13	537505	419	INTRON	INTRON	STK24	ENSG00000102572.15	ENST00000539966.6:ENST00000397517.6:ENST00000491878.5:ENST00000481288.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	52	2	1.96602	2.0240650000000002	2.08211	0.0426807	0.0130715	0.148082	0.0996047
chr3	37076308	37076407	1655613	0	-	0.464646	(0.44,0.476]	chr3	169908	8	INTRON	INTRON	LRRFIP2	ENSG00000093167.18	ENST00000336686.9:ENST00000354379.8:ENST00000421276.6:ENST00000396428.6:ENST00000440230.5:ENST00000440742.2:ENST00000416425.5	protein_coding	protein_coding	protein_coding	protein_coding	5	52	2	1.96602	2.0240650000000002	2.08211	0.0426807	0.0130715	0.148082	0.0996047
chr6	167833620	167833719	3034404	0	+	0.373737	(0.35,0.378]	chr6	282711	53	INTRON	INTRON	AFDN	ENSG00000130396.21	ENST00000683244.1:ENST00000400825.8:ENST00000351017.9:ENST00000344191.8:ENST00000392112.5:ENST00000392108.7:ENST00000400824.8:ENST00000400822.7:ENST00000447894.6:ENST00000366809.6:ENST00000366806.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	47	2	1.81767	2.02405	2.23043	0.0640429	0.0187487	0.177882	0.117523
chr10	125083196	125083295	4713561	0	-	0.484848	(0.476,0.515]	chr10	434897	437	INTRON	INTRON	CTBP2	ENSG00000175029.17	ENST00000337195.9:ENST00000411419.6:ENST00000494626.6:ENST00000531469.5:ENST00000460976.5:ENST00000476817.1:ENST00000530884.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	70	2	1.78749	2.0239149999999997	2.26034	0.0166235	0.0157618	0.110511	0.101453
chr17	62043076	62043176	6810658	0	-	0.44	(0.408,0.44]	chr17	672946	71	INTRON	INTRON	MED13	ENSG00000108510.10	ENST00000397786.7	protein_coding	protein_coding	protein_coding	protein_coding	31	317	2	1.30046	2.023875	2.74729	0.0209356	4.01968e-6	0.112046	0.00132477
chrX	71412533	71412632	7678709	0	+	0.40404	(0.378,0.408]	chrX	786269	40	INTRON	INTRON	TAF1	ENSG00000147133.17	ENST00000683202.1:ENST00000373790.9:ENST00000423759.6:ENST00000683782.1:ENST00000683668.1:ENST00000276072.9:ENST00000463163.5:ENST00000373775.8:ENST00000485087.6:ENST00000437147.8:ENST00000683358.1:ENST00000682124.1:ENST00000461764.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	20	207	2	1.70157	2.0237950000000002	2.34602	0.00776221	1.77021e-4	0.0757646	0.0116105
chr9	137576969	137577069	4377606	0	-	0.47	(0.44,0.476]	chr9	403655	1	SS5_PROX	SS5_PROX:INTRON	DPH7	ENSG00000148399.13	ENST00000277540.7:ENST00000479650.5:ENST00000475100.5:ENST00000472113.5:ENST00000467768.5:ENST00000470855.5:ENST00000481839.5:ENST00000476303.1:ENST00000460572.1:ENST00000491359.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	115	2	1.92491	2.02377	2.12263	0.00692375	0.00301776	0.0718189	0.0507519
chr11	46805858	46805956	4948352	0	-	0.479592	(0.476,0.515]	chr11	463813	37	INTRON	INTRON	CKAP5	ENSG00000175216.15	ENST00000529230.6:ENST00000312055.9:ENST00000354558.7	protein_coding	protein_coding	protein_coding	protein_coding	6	62	2	1.83961	2.0237499999999997	2.20789	0.0314489	0.00820497	0.13151	0.081115
chr14	49674927	49675026	5886373	0	-	0.282828	(0.28,0.32]	chr14	558612	1	INTRON	INTRON	POLE2	ENSG00000100479.13	ENST00000216367.10:ENST00000539565.6:ENST00000556584.5:ENST00000554396.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	50	2	1.85772	2.0237350000000003	2.18975	0.0776042	0.0300199	0.196285	0.142135
chr14	30977791	30977891	5857387	0	-	0.25	[0,0.28]	chr14	556508	134	INTRON	INTRON	STRN3	ENSG00000196792.12	ENST00000355683.9:ENST00000357479.10:ENST00000555358.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	79	2	1.31355	2.023695	2.73384	0.0613574	0.0246308	0.193423	0.12011
chr6	169671256	169671356	3266816	0	-	0.51	(0.476,0.515]	chr6	303237	4	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	WDR27	ENSG00000184465.16	ENST00000448612.6:ENST00000648472.1:ENST00000423258.5:ENST00000647790.1:ENST00000647873.1:ENST00000649303.1:ENST00000647889.1:ENST00000648017.1:ENST00000650296.1:ENST00000546953.1:ENST00000649806.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	62	2	1.93059	2.02369	2.11679	0.023762	0.0115627	0.118822	0.0962115
chr1	173481982	173482081	255561	0	+	0.393939	(0.378,0.408]	chr1	30499	1	INTRON	INTRON	PRDX6	ENSG00000117592.9	ENST00000340385.6:ENST00000470017.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	46	2	1.51223	2.02363	2.53503	0.051139	0.0319942	0.176696	0.13174
chr8	102352083	102352183	4012145	0	-	0.51	(0.476,0.515]	chr8	367218	46	INTRON	INTRON	UBR5	ENSG00000104517.13	ENST00000520539.6:ENST00000220959.8:ENST00000521922.5	protein_coding	protein_coding	protein_coding	protein_coding	21	191	2	1.82516	2.0236099999999997	2.22206	0.00175345	0.00151167	0.0376491	0.0360297
chr9	4821650	4821750	4095153	0	+	0.58	(0.57,1]	chr9	373155	281	INTRON	INTRON	RCL1	ENSG00000120158.12	ENST00000381750.9:ENST00000381732.3:ENST00000442869.5:ENST00000473230.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	31	2	1.71424	2.023595	2.33295	0.0279017	0.0122896	0.137011	0.091087
chr1	20765931	20766031	389646	0	-	0.42	(0.408,0.44]	chr1	46542	4	SS3_PROX	SS3_PROX:INTRON	HP1BP3	ENSG00000127483.19	ENST00000438032.6:ENST00000312239.10:ENST00000375003.6:ENST00000419948.5:ENST00000424732.5	protein_coding	protein_coding	protein_coding	protein_coding	7	56	2	1.4609	2.0235700000000003	2.58624	0.0340889	0.0273686	0.146815	0.123904
chr5	87394902	87394986	2668736	0	-	0.333333	(0.32,0.35]	chr5	252562	6	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CCNH	ENSG00000134480.16	ENST00000645953.1:ENST00000646883.1:ENST00000505587.5:ENST00000510921.5:ENST00000508855.5:ENST00000256897.9:ENST00000504878.1:ENST00000511207.5:ENST00000504115.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	61	2	1.69107	2.0234900000000002	2.35591	0.0517392	0.0128129	0.159306	0.0990564
chr1	162595148	162595248	238665	0	+	0.4	(0.378,0.408]	chr1	28751	15	INTRON	INTRON	UAP1	ENSG00000117143.14	ENST00000367925.6:ENST00000367926.9	protein_coding	protein_coding	protein_coding	protein_coding	5	54	2	1.58349	2.02347	2.46345	0.0653091	0.00827342	0.180158	0.0813266
chr12	11653756	11653856	5076641	0	+	0.38	(0.378,0.408]	chr12	480040	32	INTRON	INTRON	ETV6	ENSG00000139083.11	ENST00000396373.9:ENST00000541426.1:ENST00000544715.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	40	2	1.65821	2.0234699999999997	2.38873	0.0506302	0.0458857	0.17547	0.149888
chr5	83076820	83076920	2666695	0	-	0.4	(0.378,0.408]	chr5	252500	1	SS5_PROX	SS5_PROX:INTRON	TMEM167A	ENSG00000174695.10	ENST00000502346.2:ENST00000511450.5:ENST00000504622.5:ENST00000509770.1:ENST00000503892.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	40	2	1.65821	2.0234699999999997	2.38873	0.0506302	0.0458857	0.17547	0.149888
chr16	30699342	30699407	6338644	0	+	0.630769	(0.57,1]	chr16	607709	1	SS5_PROX	SS5_PROX:INTRON	SRCAP	ENSG00000080603.17	ENST00000411466.6:ENST00000262518.9	protein_coding	protein_coding	protein_coding	protein_coding	7	37	2	1.95484	2.0234550000000002	2.09207	0.0121228	0.0113205	0.0948452	0.090965
chr7	129035256	129035356	3636384	0	-	0.44	(0.408,0.44]	chr7	338142	167	INTRON	INTRON	TNPO3	ENSG00000064419.14	ENST00000627585.2:ENST00000265388.10:ENST00000471234.5:ENST00000482320.5:ENST00000471166.1	protein_coding	protein_coding	protein_coding	protein_coding	9	79	2	1.59687	2.02345	2.45003	0.0164598	0.00990006	0.110142	0.0838372
chr7	155779508	155779607	3453271	0	+	0.272727	[0,0.28]	chr7	322755	45	UTR3	UTR3:EXON_MRNA	RBM33	ENSG00000184863.11	ENST00000401878.8:ENST00000341148.7	protein_coding	protein_coding	protein_coding	protein_coding	20	290	2	1.80631	2.023405	2.2405	0.00423693	0.00216243	0.0595557	0.0417866
chr7	29676987	29677086	3511730	0	-	0.353535	(0.35,0.378]	chr7	327367	253	INTRON	INTRON	ZNRF2P2	ENSG00000225264.3	ENST00000442865.1:ENST00000426767.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	4	48	2	1.90405	2.023345	2.14264	0.0482651	0.0274795	0.171852	0.123904
chr8	58555198	58555298	3757506	0	+	0.37	(0.35,0.378]	chr8	349434	15	INTRON	INTRON	SDCBP	ENSG00000137575.12	ENST00000522243.5:ENST00000447182.6:ENST00000413219.6:ENST00000424270.6:ENST00000523483.5:ENST00000520168.5:ENST00000260130.9:ENST00000519115.5:ENST00000522843.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	48	2	1.90405	2.023345	2.14264	0.0482651	0.0274795	0.171852	0.123904
chr1	155914320	155914413	564640	0	-	0.311828	(0.28,0.32]	chr1	67438	1	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	KHDC4	ENSG00000132680.11	ENST00000368321.8:ENST00000368320.7:ENST00000478002.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	16	204	2	1.96321	2.023325	2.08344	0.00383778	0.00263114	0.0542786	0.0471758
chr1	155549472	155549572	562763	0	-	0.5	(0.476,0.515]	chr1	67117	275	INTRON	INTRON	ASH1L	ENSG00000116539.14	ENST00000676814.1:ENST00000392403.8:ENST00000368346.7:ENST00000677213.1:ENST00000678117.1:ENST00000679097.1:ENST00000679333.1:ENST00000679133.1:ENST00000548830.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	52	2	1.92984	2.023315	2.11679	0.0466474	0.0115627	0.151522	0.0962115
chr1	186372670	186372764	604405	0	-	0.478723	(0.476,0.515]	chr1	72189	13	INTRON	INTRON	TPR	ENSG00000047410.14	ENST00000367478.9:ENST00000474852.1:ENST00000613151.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	52	2	1.92984	2.023315	2.11679	0.0466474	0.0115627	0.151522	0.0962115
chr9	34190561	34190660	4111384	0	+	0.343434	(0.32,0.35]	chr9	374718	110	INTRON	INTRON	UBAP1	ENSG00000165006.14	ENST00000625521.2:ENST00000379186.8:ENST00000297661.9:ENST00000626262.2	protein_coding	protein_coding	protein_coding	protein_coding	7	84	2	1.57443	2.023315	2.4722	0.048436	0.00307237	0.153635	0.0509893
chr1	51458533	51458633	453739	0	-	0.51	(0.476,0.515]	chr1	54396	11	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:INTRON	EPS15	ENSG00000085832.17	ENST00000371733.8:ENST00000371730.6:ENST00000371727.5:ENST00000464478.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	11	100	2	1.38727	2.02319	2.65911	0.0327879	0.00116074	0.133816	0.0314098
chr6	31535425	31535485	3078772	0	-	0.533333	(0.515,0.57]	chr6	286742	2	CDS	CDS:EXON_MRNA	DDX39B	ENSG00000198563.14	ENST00000458640.5:ENST00000462256.5:ENST00000376177.6:ENST00000484566.5:ENST00000396172.6:ENST00000482195.5:ENST00000431908.5:ENST00000481456.1:ENST00000427214.5:ENST00000428098.5:ENST00000419338.5:ENST00000456662.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	16	131	2	1.74689	2.023165	2.29944	0.00414607	9.49246e-4	0.0589317	0.0281755
chr2	97235170	97235270	832116	0	+	0.42	(0.408,0.44]	chr2	93233	9	INTRON	INTRON	ANKRD36	ENSG00000135976.21	ENST00000420699.9:ENST00000652721.1:ENST00000461153.7:ENST00000421946.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	72	2	1.92319	2.02311	2.12303	0.0247322	0.00586883	0.12011	0.0690758
chr1	39863410	39863509	428070	0	-	0.484848	(0.476,0.515]	chr1	52020	56	INTRON	INTRON	TRIT1	ENSG00000043514.17	ENST00000316891.10:ENST00000648678.1:ENST00000537440.5:ENST00000372818.5:ENST00000462797.5:ENST00000441669.6:ENST00000495175.6:ENST00000491865.5:ENST00000541099.5:ENST00000492612.6:ENST00000489945.5:ENST00000486825.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	60	2	1.99457	2.0230550000000003	2.05154	0.0336015	0.009924	0.134145	0.0877296
chr7	135948898	135948998	3649185	0	-	0.48	(0.476,0.515]	chr7	339202	185	INTRON	INTRON	MTPN	ENSG00000105887.11	ENST00000393085.4:ENST00000435723.1	protein_coding	protein_coding	protein_coding	protein_coding	6	60	2	1.99457	2.0230550000000003	2.05154	0.0336015	0.009924	0.134145	0.0877296
chr5	179618701	179618795	2779722	0	-	0.404255	(0.378,0.408]	chr5	262312	5	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HNRNPH1	ENSG00000169045.17	ENST00000329433.11:ENST00000393432.9:ENST00000356731.9:ENST00000442819.6:ENST00000502904.5:ENST00000514332.5:ENST00000515481.5:ENST00000510411.5:ENST00000510678.5:ENST00000519958.5:ENST00000514731.5:ENST00000521173.5:ENST00000503105.5:ENST00000504779.6:ENST00000520415.1:ENST00000518548.5:ENST00000508103.5:ENST00000506721.5:ENST00000523137.5:ENST00000505811.5:ENST00000510431.5:ENST00000519056.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	20	202	2	1.90077	2.023035	2.1453	0.00154228	0.00152291	0.0362716	0.0353936
chr3	9430342	9430440	1359224	0	+	0.397959	(0.378,0.408]	chr3	142699	4	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	SETD5	ENSG00000168137.20	ENST00000402198.7:ENST00000431285.5:ENST00000478475.5:ENST00000415650.5:ENST00000682536.1:ENST00000663774.1:ENST00000665872.1:ENST00000666307.1:ENST00000693430.1:ENST00000691925.1:ENST00000684606.1:ENST00000691175.1:ENST00000688835.1:ENST00000683262.1:ENST00000443339.5:ENST00000406341.5:ENST00000670063.1:ENST00000468208.2:ENST00000691299.1:ENST00000684055.1:ENST00000407969.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	75	2	1.82258	2.022965	2.22335	0.0341279	0.00388279	0.135102	0.0567196
chr3	138711511	138711609	1830257	0	-	0.428571	(0.408,0.44]	chr3	183999	39	INTRON	INTRON	PIK3CB	ENSG00000051382.9	ENST00000674063.1:ENST00000289153.6:ENST00000477593.5:ENST00000469284.6:ENST00000544716.5:ENST00000462898.5:ENST00000493568.5:ENST00000473435.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	72	2	1.8865	2.02294	2.15938	0.0148842	0.011260300000000001	0.107116	0.0884004
chr6	87543625	87543725	3152163	0	-	0.3	(0.28,0.32]	chr6	294026	11	INTRON	INTRON	RARS2	ENSG00000146282.19	ENST00000691533.1:ENST00000493269.2:ENST00000685069.1:ENST00000691725.1:ENST00000369536.10:ENST00000693431.1:ENST00000685408.1:ENST00000693327.1:ENST00000691205.1:ENST00000689174.1:ENST00000692684.1:ENST00000686988.1:ENST00000690622.1:ENST00000689206.1:ENST00000688532.1:ENST00000686154.1:ENST00000686407.1:ENST00000685701.1:ENST00000689561.1:ENST00000691238.1:ENST00000685336.1:ENST00000686284.1:ENST00000687586.1:ENST00000685376.1:ENST00000685881.1:ENST00000691815.1:ENST00000687090.1:ENST00000451155.2:ENST00000687437.1:ENST00000692394.1:ENST00000687729.1:ENST00000693605.1:ENST00000687909.1:ENST00000688391.1:ENST00000690884.1:ENST00000692843.1:ENST00000684790.1:ENST00000692270.1:ENST00000685219.1:ENST00000689952.1:ENST00000687579.1:ENST00000686857.1:ENST00000690205.1:ENST00000690705.1:ENST00000686142.1:ENST00000688106.1:ENST00000686196.1:ENST00000687078.1:ENST00000690555.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	90	2	1.91611	2.022915	2.12972	0.0539102	0.00413957	0.164153	0.0588921
chr10	60782096	60782196	4435804	0	+	0.25	[0,0.28]	chr10	409170	15	INTRON	INTRON	CDK1	ENSG00000170312.17	ENST00000519078.6:ENST00000475504.6:ENST00000316629.8:ENST00000519760.1:ENST00000395284.8:ENST00000448257.6:ENST00000373809.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	109	2	1.83936	2.0228900000000003	2.20642	0.0280845	0.0108459	0.125065	0.0921804
chr14	103394402	103394501	5825709	0	+	0.484848	(0.476,0.515]	chr14	552781	2	INTRON	INTRON	MARK3	ENSG00000075413.19	ENST00000678179.1:ENST00000676838.1:ENST00000677348.1:ENST00000677404.1:ENST00000676694.1:ENST00000676938.1:ENST00000678619.1:ENST00000676897.1:ENST00000677214.1:ENST00000677942.1:ENST00000676830.1:ENST00000678999.1:ENST00000677228.1:ENST00000556744.2:ENST00000677104.1:ENST00000679330.1:ENST00000560417.6:ENST00000440884.7:ENST00000676475.1:ENST00000677035.1:ENST00000678022.1:ENST00000677560.1:ENST00000561314.6:ENST00000429436.7:ENST00000677118.1:ENST00000676564.1:ENST00000678169.1:ENST00000678175.1:ENST00000678897.1:ENST00000678278.1:ENST00000676645.1:ENST00000677829.1:ENST00000678302.1:ENST00000677133.1:ENST00000561164.2:ENST00000558223.6:ENST00000559328.6:ENST00000678207.1:ENST00000677360.1:ENST00000676905.1:ENST00000678343.1:ENST00000677347.1:ENST00000678071.1:ENST00000677432.1:ENST00000678237.1:ENST00000677604.1:ENST00000676518.1:ENST00000677051.1:ENST00000677857.1:ENST00000677869.1:ENST00000678423.1:ENST00000560603.6:ENST00000416682.6:ENST00000303622.13:ENST00000216288.11:ENST00000679105.1:ENST00000553942.5:ENST00000335102.9:ENST00000561225.1:ENST00000678091.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	45	2	1.63962	2.02285	2.40608	0.0425709	0.0346854	0.148144	0.148082
chr1	206610352	206610450	624850	0	-	0.5	(0.476,0.515]	chr1	74419	5	INTRON	INTRON	EIF2D	ENSG00000143486.16	ENST00000271764.7:ENST00000367114.7:ENST00000437518.1:ENST00000620382.4:ENST00000474408.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	43	2	1.72558	2.022795	2.32001	0.0767648	0.0136217	0.196164	0.101682
chrX	110035431	110035531	7700361	0	+	0.37	(0.35,0.378]	chrX	788130	309	INTRON	INTRON	TMEM164	ENSG00000157600.12	ENST00000372072.7:ENST00000471255.5:ENST00000372073.5:ENST00000372068.7:ENST00000288381.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	72	2	1.63783	2.022765	2.4077	0.0250627	0.0122026	0.133086	0.0910127
chr17	22145665	22145765	6579120	0	+	0.48	(0.476,0.515]	chr17	639556	544	INTRON	INTRON	UBBP4	ENSG00000263563.7	ENST00000648259.1:ENST00000688301.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	12	118	2	1.88674	2.022675	2.15861	0.00482447	0.00357273	0.0639522	0.0532819
chr12	130873852	130873942	5247108	0	+	0.411111	(0.408,0.44]	chr12	498936	9	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	RAN	ENSG00000132341.12	ENST00000448750.7:ENST00000536606.5:ENST00000543796.6:ENST00000541630.5:ENST00000392369.6:ENST00000477395.5:ENST00000535090.5:ENST00000541679.7:ENST00000392367.4:ENST00000464211.6:ENST00000539498.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	16	164	2	1.8827	2.022655	2.16261	0.00370089	0.00129833	0.0561162	0.0330434
chr7	73686535	73686635	3331596	0	+	0.39	(0.378,0.408]	chr7	309875	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	BUD23	ENSG00000071462.12	ENST00000464615.1:ENST00000421304.5:ENST00000432522.5:ENST00000421744.5:ENST00000265758.7:ENST00000496153.5:ENST00000478670.5:ENST00000441822.5:ENST00000436944.5:ENST00000428163.5:ENST00000463307.5:ENST00000423497.5:ENST00000430270.5:ENST00000487006.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	75	2	1.80483	2.022655	2.24048	0.0201276	0.00867536	0.121243	0.0787771
chr10	70877927	70878025	4448888	0	+	0.530612	(0.515,0.57]	chr10	410580	7	UTR3	UTR3:EXON_MRNA	SGPL1	ENSG00000166224.17	ENST00000373202.8	protein_coding	protein_coding	protein_coding	protein_coding	6	51	2	1.89462	2.022565	2.15051	0.0238113	0.0139002	0.118889	0.10247
chr3	179149126	179149226	1565808	0	+	0.54	(0.515,0.57]	chr3	161899	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	PIK3CA	ENSG00000121879.6	ENST00000477735.1:ENST00000263967.4:ENST00000643187.1:ENST00000675786.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	51	2	1.89462	2.022565	2.15051	0.0238113	0.0139002	0.118889	0.10247
chr10	119046326	119046425	4704557	0	-	0.333333	(0.32,0.35]	chr10	433933	18	INTRON	INTRON	EIF3A	ENSG00000107581.13	ENST00000369144.8:ENST00000541549.2	protein_coding	protein_coding	protein_coding	protein_coding	3	37	2	1.81328	2.02255	2.23182	0.068598	0.0615716	0.193423	0.184298
chr16	23881991	23882091	6324220	0	+	0.33	(0.32,0.35]	chr16	605697	128	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000645517.1:ENST00000498739.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	37	2	1.81328	2.02255	2.23182	0.068598	0.0615716	0.193423	0.184298
chr17	22166349	22166449	6579327	0	+	0.33	(0.32,0.35]	chr17	639556	751	INTRON	INTRON	UBBP4	ENSG00000263563.7	ENST00000648259.1:ENST00000688301.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	3	37	2	1.81328	2.02255	2.23182	0.068598	0.0615716	0.193423	0.184298
chr7	156705153	156705253	3686111	0	-	0.34	(0.32,0.35]	chr7	341983	166	INTRON	INTRON	LMBR1	ENSG00000105983.23	ENST00000353442.10:ENST00000448926.5:ENST00000415428.5:ENST00000454132.5:ENST00000434503.5:ENST00000461603.5:ENST00000486837.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	37	2	1.81328	2.02255	2.23182	0.068598	0.0615716	0.193423	0.184298
chr9	123449499	123449598	4341195	0	-	0.333333	(0.32,0.35]	chr9	399020	87	INTRON	INTRON	DENND1A	ENSG00000119522.17	ENST00000373624.6:ENST00000473039.5:ENST00000394215.7:ENST00000373620.7:ENST00000491650.5:ENST00000497135.5:ENST00000373618.1:ENST00000479305.5:ENST00000462245.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	37	2	1.81328	2.02255	2.23182	0.068598	0.0615716	0.193423	0.184298
chr7	129053652	129053752	3636569	0	-	0.33	(0.32,0.35]	chr7	338148	116	INTRON	INTRON	TNPO3	ENSG00000064419.14	ENST00000627585.2:ENST00000265388.10:ENST00000471234.5:ENST00000482320.5:ENST00000471166.1	protein_coding	protein_coding	protein_coding	protein_coding	10	110	2	1.76568	2.022535	2.27939	0.00911113	0.00844518	0.0855292	0.0776969
chr1	35379367	35379467	69404	0	+	0.49	(0.476,0.515]	chr1	8759	84	INTRON	INTRON	ZMYM4	ENSG00000146463.12	ENST00000314607.11:ENST00000457946.1	protein_coding	protein_coding	protein_coding	protein_coding	4	43	2	1.99341	2.022475	2.05154	0.037389	0.0336015	0.155878	0.134145
chr2	171556283	171556380	917672	0	+	0.381443	(0.378,0.408]	chr2	101061	16	UTR3	UTR3:EXON_MRNA	CYBRD1	ENSG00000071967.12	ENST00000321348.9:ENST00000375252.3	protein_coding	protein_coding	protein_coding	protein_coding	5	54	2	1.63458	2.022475	2.41037	0.0573057	0.0100185	0.167723	0.0880217
chr4	98927408	98927506	2208506	0	-	0.510204	(0.476,0.515]	chr4	216188	5	INTRON	INTRON	EIF4E	ENSG00000151247.13	ENST00000450253.7:ENST00000280892.10:ENST00000515638.5:ENST00000504432.5:ENST00000511644.5:ENST00000505992.1:ENST00000507665.5:ENST00000504472.1:ENST00000418385.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	43	2	1.99341	2.022475	2.05154	0.037389	0.0336015	0.155878	0.134145
chr7	103979936	103980036	3599516	0	-	0.51	(0.476,0.515]	chr7	335929	624	INTRON	INTRON	RELN	ENSG00000189056.15	ENST00000343529.9:ENST00000428762.6:ENST00000681034.1:ENST00000424685.3:ENST00000679867.1:ENST00000473457.2:ENST00000680712.1:ENST00000681931.1:ENST00000681401.1:ENST00000679689.1:ENST00000681182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	43	2	1.99341	2.022475	2.05154	0.037389	0.0336015	0.155878	0.134145
chr12	112083516	112083615	5415170	0	-	0.40404	(0.378,0.408]	chr12	517230	20	INTRON	INTRON	NAA25	ENSG00000111300.10	ENST00000261745.9:ENST00000552527.5:ENST00000549711.5:ENST00000551858.1:ENST00000547133.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	113	2	1.69511	2.02243	2.34975	0.0136145	0.0021928	0.0949306	0.0435144
chr1	32839239	32839337	66787	0	+	0.367347	(0.35,0.378]	chr1	8569	22	INTRON	INTRON	S100PBP	ENSG00000116497.18	ENST00000373476.5:ENST00000531123.5:ENST00000373475.10	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	48	2	1.4414	2.022405	2.60341	0.0629423	0.0275785	0.196658	0.123904
chr1	47309476	47309575	446065	0	-	0.373737	(0.35,0.378]	chr1	54067	41	INTRON	INTRON	STIL	ENSG00000123473.17	ENST00000360380.7:ENST00000371877.8:ENST00000337817.10:ENST00000682977.1:ENST00000396221.6:ENST00000447475.7:ENST00000436811.2	protein_coding	protein_coding	protein_coding	protein_coding	5	48	2	1.4414	2.022405	2.60341	0.0629423	0.0275785	0.196658	0.123904
chr2	69939969	69940069	805762	0	+	0.27	[0,0.28]	chr2	89939	18	UTR3	UTR3:EXON_MRNA:INTRON	MXD1	ENSG00000059728.11	ENST00000540449.5:ENST00000264444.7:ENST00000465446.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	92	2	1.69895	2.022405	2.34586	0.0568939	0.00631808	0.167723	0.0722266
chr3	138821618	138821718	1831369	0	-	0.49	(0.476,0.515]	chr3	184062	247	INTRON	INTRON	PIK3CB	ENSG00000051382.9	ENST00000674063.1:ENST00000477593.5:ENST00000462898.5:ENST00000483968.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	100	2	1.89682	2.022335	2.14785	0.0158424	0.00197135	0.101453	0.0411469
chr1	235488667	235488767	664298	0	-	0.25	[0,0.28]	chr1	78625	1	SS5_PROX	SS5_PROX:INTRON	B3GALNT2	ENSG00000162885.14	ENST00000366600.8:ENST00000675193.1:ENST00000676288.1:ENST00000675555.1:ENST00000612859.4:ENST00000313984.3:ENST00000494378.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	56	2	1.71402	2.022285	2.33055	0.062338	0.047753	0.175343	0.170327
chr9	37249394	37249494	4118951	0	+	0.26	[0,0.28]	chr9	375389	625	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000461038.5:ENST00000488607.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	56	2	1.71402	2.022285	2.33055	0.062338	0.047753	0.175343	0.170327
chr9	131444925	131445022	4217484	0	+	0.43299	(0.408,0.44]	chr9	386752	2	INTRON	INTRON	PRRC2B	ENSG00000288701.1	ENST00000684596.1:ENST00000683519.1:ENST00000682501.1	protein_coding	protein_coding	protein_coding	protein_coding	5	52	2	1.93002	2.022245	2.11447	0.0285207	0.022095	0.12666	0.123903
chr11	46822666	46822766	4948530	0	-	0.5	(0.476,0.515]	chr11	463853	10	INTRON	INTRON	CKAP5	ENSG00000175216.15	ENST00000529230.6:ENST00000312055.9:ENST00000526496.1:ENST00000525248.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	57	2	1.55902	2.022145	2.48527	0.03496	0.0242957	0.13747500000000001	0.130919
chr1	65267128	65267228	135664	0	+	0.51	(0.476,0.515]	chr1	15346	18	INTRON	INTRON	DNAJC6	ENSG00000116675.16	ENST00000463018.5:ENST00000494710.6:ENST00000263441.11:ENST00000395325.7:ENST00000483402.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	90	2	1.83634	2.022115	2.20789	0.00949158	0.00820497	0.0817766	0.081115
chr16	70262924	70263024	6510213	0	-	0.39	(0.378,0.408]	chr16	630545	4	SS3_PROX	SS3_PROX:INTRON	AARS1	ENSG00000090861.17	ENST00000674963.1:ENST00000675643.1:ENST00000675917.1:ENST00000674691.1:ENST00000261772.13:ENST00000675569.1:ENST00000676209.1:ENST00000676211.1:ENST00000676040.1:ENST00000675953.1:ENST00000675691.1:ENST00000676004.1:ENST00000675270.1:ENST00000675403.1:ENST00000676212.1:ENST00000675045.1:ENST00000675035.1:ENST00000676168.1:ENST00000674652.1:ENST00000675133.1:ENST00000675120.1:ENST00000674811.1:ENST00000674512.1:ENST00000675853.1:ENST00000565361.3:ENST00000676247.1:ENST00000674848.1:ENST00000674962.1:ENST00000675371.1:ENST00000675986.1:ENST00000674768.1:ENST00000675297.1:ENST00000675751.1:ENST00000564359.6:ENST00000569790.2:ENST00000566969.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	104	2	1.395	2.022105	2.64921	0.0467334	4.93004e-4	0.151763	0.0200992
chr15	75363834	75363916	6223161	0	-	0.621951	(0.57,1]	chr15	594358	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	MAN2C1	ENSG00000140400.18	ENST00000267978.10:ENST00000563622.5:ENST00000565683.5:ENST00000569482.5:ENST00000563441.5:ENST00000566634.5:ENST00000421803.6:ENST00000570257.6:ENST00000565784.5:ENST00000563539.5:ENST00000565699.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	37	2	1.79978	2.0220599999999997	2.24434	0.0199509	0.00677343	0.109608	0.074225
chr16	15883048	15883148	6451900	0	-	0.46	(0.44,0.476]	chr16	621927	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	CEP20	ENSG00000133393.13	ENST00000255759.11:ENST00000573968.5:ENST00000573087.5:ENST00000573396.5:ENST00000575744.5:ENST00000572415.5:ENST00000575073.5:ENST00000573429.5:ENST00000575938.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	43	2	1.77101	2.022025	2.27304	0.0693975	0.0158915	0.184298	0.109464
chr16	16521311	16521411	6311075	0	+	0.47	(0.44,0.476]	chr16	604098	213	INTRON	INTRON	ENSG00000260126	ENSG00000260126.2	ENST00000567465.2	lncRNA	lncRNA	lncRNA	lncRNA	5	44	2	1.43625	2.021995	2.60774	0.063142	0.0255874	0.197183	0.120269
chr12	39293725	39293825	5307078	0	-	0.32	(0.28,0.32]	chr12	504992	6	UTR3	UTR3:EXON_MRNA	KIF21A	ENSG00000139116.19	ENST00000361418.10:ENST00000547733.1:ENST00000361961.7:ENST00000636569.1:ENST00000552961.5:ENST00000551264.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	66	2	1.94591	2.021925	2.09794	0.0340483	0.0228482	0.134863	0.125519
chr21	6663944	6664044	7425813	0	-	0.31	(0.28,0.32]	chr21	757499	40	INTRON	INTRON	ENSG00000280145	ENSG00000280145.3	ENST00000625185.3:ENST00000624846.3:ENST00000623313.1:ENST00000624965.1	lncRNA	lncRNA	lncRNA	lncRNA	5	66	2	1.94591	2.021925	2.09794	0.0340483	0.0228482	0.134863	0.125519
chr2	199271532	199271629	1307371	0	-	0.340206	(0.32,0.35]	chr2	136827	22	UTR3	UTR3:EXON_MRNA	SATB2	ENSG00000119042.17	ENST00000614512.4:ENST00000417098.6:ENST00000260926.9:ENST00000443023.5	protein_coding	protein_coding	protein_coding	protein_coding	4	47	2	1.55682	2.021875	2.48693	0.0724487	0.0338094	0.188101	0.146709
chr1	21773066	21773166	396769	0	-	0.48	(0.476,0.515]	chr1	47345	149	INTRON	INTRON	USP48	ENSG00000090686.16	ENST00000400301.5:ENST00000308271.14:ENST00000529637.5:ENST00000421625.6:ENST00000527823.5:ENST00000532737.1:ENST00000489108.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	54	2	1.27903	2.021815	2.7646	0.0608608	0.0162075	0.19287	0.101453
chr1	149316	149413	352800	0	-	0.412371	(0.408,0.44]	chr1	40806	31	EXON_LNCRNA	EXON_LNCRNA:INTRON	ENSG00000241860	ENSG00000241860.7	ENST00000484859.1:ENST00000466557.6	lncRNA	lncRNA	lncRNA	lncRNA	3	33	2	1.74775	2.021725	2.2957	0.0735403	0.0516458	0.190238	0.176696
chr1	86926994	86927094	153716	0	+	0.44	(0.408,0.44]	chr1	16952	108	INTRON	INTRON	HS2ST1	ENSG00000153936.18	ENST00000370550.10:ENST00000370551.8:ENST00000687893.1:ENST00000693745.1:ENST00000689904.1:ENST00000690674.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	33	2	1.74775	2.021725	2.2957	0.0735403	0.0516458	0.190238	0.176696
chr11	66073927	66074027	4807904	0	+	0.43	(0.408,0.44]	chr11	447330	27	INTRON	INTRON	PACS1	ENSG00000175115.13	ENST00000320580.9:ENST00000527224.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	33	2	1.74775	2.021725	2.2957	0.0735403	0.0516458	0.190238	0.176696
chr15	58001800	58001899	6186894	0	-	0.414141	(0.408,0.44]	chr15	589758	63	INTRON	INTRON	ALDH1A2	ENSG00000128918.15	ENST00000537372.5:ENST00000249750.9:ENST00000347587.7:ENST00000430119.6:ENST00000558231.5:ENST00000559517.5:ENST00000559266.5:ENST00000561070.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	33	2	1.74775	2.021725	2.2957	0.0735403	0.0516458	0.190238	0.176696
chr2	241293262	241293362	1348345	0	-	0.36	(0.35,0.378]	chr2	141648	203	INTRON	INTRON	HDLBP	ENSG00000115677.18	ENST00000310931.10:ENST00000391976.6:ENST00000428482.5:ENST00000430918.5:ENST00000441124.5:ENST00000413241.5:ENST00000423693.5:ENST00000425989.5:ENST00000420451.5:ENST00000417540.5:ENST00000462130.1:ENST00000496569.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	69	2	1.6122	2.02164	2.43108	0.0616849	0.00345501	0.174021	0.0539802
chr7	91968874	91968974	3351294	0	+	0.5	(0.476,0.515]	chr7	312180	274	INTRON	INTRON	AKAP9	ENSG00000127914.19	ENST00000680534.1:ENST00000680513.1:ENST00000680072.1:ENST00000679821.1:ENST00000679554.1:ENST00000356239.8:ENST00000679521.1:ENST00000680181.1:ENST00000681722.1:ENST00000680766.1:ENST00000679448.1:ENST00000681412.1:ENST00000680047.1:ENST00000679474.1:ENST00000680952.1:ENST00000679457.1:ENST00000679722.1:ENST00000680074.1:ENST00000493453.1:ENST00000394564.5:ENST00000674381.2:ENST00000359028.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	62	2	1.79187	2.0216250000000002	2.25138	0.0362169	0.00692374	0.138959	0.0753208
chr1	15889156	15889255	35079	0	+	0.424242	(0.408,0.44]	chr1	4272	121	INTRON	INTRON	SPEN	ENSG00000065526.12	ENST00000673875.1:ENST00000375759.8:ENST00000438066.1:ENST00000442985.1	protein_coding	protein_coding	protein_coding	protein_coding	6	60	2	1.92871	2.0215899999999998	2.11447	0.0285207	0.0127189	0.12666	0.0986242
chr12	120552798	120552898	5235951	0	+	0.43	(0.408,0.44]	chr12	496869	1	SS5_PROX	SS5_PROX:INTRON	RNF10	ENSG00000022840.17	ENST00000325954.9:ENST00000542438.1:ENST00000538796.5:ENST00000413266.6:ENST00000551139.6:ENST00000536869.5:ENST00000543578.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	60	2	1.92871	2.0215899999999998	2.11447	0.0285207	0.0127189	0.12666	0.0986242
chr1	149860240	149860336	549563	0	-	0.479167	(0.476,0.515]	chr1	64521	4	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	H4C15	ENSG00000270276.3	ENST00000621520.1:ENST00000612061.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	7	75	2	1.48023	2.02157	2.56291	0.0559072	0.00222582	0.18407	0.0421176
chr3	32545426	32545510	1649865	0	-	0.297619	(0.28,0.32]	chr3	169153	1	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DYNC1LI1	ENSG00000144635.9	ENST00000273130.9:ENST00000481915.5:ENST00000432458.6:ENST00000413350.5:ENST00000424991.1:ENST00000475193.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	49	2	1.71442	2.021565	2.32871	0.0581621	0.0454351	0.167723	0.164236
chr7	72904382	72904482	3330042	0	+	0.45	(0.44,0.476]	chr7	309565	129	INTRON	INTRON	POM121	ENSG00000196313.13	ENST00000627934.3:ENST00000395270.5	protein_coding	protein_coding	protein_coding	protein_coding	11	110	2	1.93083	2.021565	2.1123	0.00932249	0.0023263	0.0817766	0.0442989
chr10	60790405	60790504	4435893	0	+	0.484848	(0.476,0.515]	chr10	409191	18	INTRON	INTRON	CDK1	ENSG00000170312.17	ENST00000519078.6:ENST00000316629.8:ENST00000395284.8:ENST00000448257.6:ENST00000373809.2:ENST00000487784.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	79	2	1.94611	2.02154	2.09697	0.0136924	0.0075261	0.0949306	0.0773151
chr7	73306294	73306394	3554228	0	-	0.5	(0.476,0.515]	chr7	330695	8	INTRON	INTRON	NSUN5	ENSG00000130305.17	ENST00000438747.7:ENST00000428206.5:ENST00000471461.5:ENST00000252594.10:ENST00000310326.8:ENST00000455763.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	62	2	1.97402	2.0215	2.06898	0.0206778	0.0137491	0.110999	0.10247
chr8	6709742	6709842	3695015	0	+	0.49	(0.476,0.515]	chr8	342827	2	SS5_PROX	SS5_PROX:INTRON	AGPAT5	ENSG00000155189.12	ENST00000285518.11:ENST00000523234.5:ENST00000518327.1:ENST00000523586.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	62	2	1.97402	2.0215	2.06898	0.0206778	0.0137491	0.110999	0.10247
chr22	19066202	19066301	7551450	0	-	0.555556	(0.515,0.57]	chr22	771891	4	INTRON	INTRON	DGCR2	ENSG00000070413.20	ENST00000537045.5:ENST00000545799.5:ENST00000263196.12:ENST00000389262.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	63	2	1.56838	2.02144	2.4745	0.0424458	0.00279583	0.161763	0.0469265
chr22	19105159	19105259	7551842	0	-	0.52	(0.515,0.57]	chr22	771903	153	INTRON	INTRON	DGCR2	ENSG00000070413.20	ENST00000537045.5:ENST00000545799.5:ENST00000263196.12:ENST00000389262.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	63	2	1.56838	2.02144	2.4745	0.0424458	0.00279583	0.161763	0.0469265
chr1	96783177	96783276	168565	0	+	0.383838	(0.378,0.408]	chr1	18243	49	INTRON	INTRON	PTBP2	ENSG00000117569.19	ENST00000482253.5:ENST00000675735.1:ENST00000609116.5:ENST00000674951.1:ENST00000675080.1:ENST00000426398.3:ENST00000370197.5:ENST00000370198.5:ENST00000476419.5:ENST00000676292.1:ENST00000676096.1:ENST00000675365.1:ENST00000674579.1:ENST00000675401.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	42	2	1.58349	2.021405	2.45932	0.0653091	0.0346754	0.180158	0.148144
chr7	105248912	105249012	3602499	0	-	0.38	(0.378,0.408]	chr7	336137	420	INTRON	INTRON	SRPK2	ENSG00000135250.17	ENST00000393651.8:ENST00000357311.7:ENST00000489828.5:ENST00000482897.5:ENST00000460391.5:ENST00000462282.5:ENST00000465112.5:ENST00000482862.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	42	2	1.58349	2.021405	2.45932	0.0653091	0.0346754	0.180158	0.148144
chr1	51854513	51854613	455054	0	-	0.38	(0.378,0.408]	chr1	54627	136	INTRON	INTRON	NRDC	ENSG00000078618.23	ENST00000354831.11:ENST00000539524.5:ENST00000352171.12:ENST00000491410.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	33	2	1.81685	2.021375	2.2259	0.0662381	0.0597868	0.189982	0.181924
chr1	230977560	230977660	655197	0	-	0.39	(0.378,0.408]	chr1	77713	159	INTRON	INTRON	TTC13	ENSG00000143643.13	ENST00000366661.9:ENST00000366662.8:ENST00000481976.6:ENST00000522821.5:ENST00000522399.1:ENST00000466507.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	33	2	1.81685	2.021375	2.2259	0.0662381	0.0597868	0.189982	0.181924
chr11	70280874	70280973	4820512	0	+	0.40404	(0.378,0.408]	chr11	449381	81	INTRON	INTRON	PPFIA1	ENSG00000131626.19	ENST00000253925.12:ENST00000389547.7:ENST00000532504.5:ENST00000530746.1:ENST00000532024.1:ENST00000648755.1:ENST00000644155.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	33	2	1.81685	2.021375	2.2259	0.0662381	0.0597868	0.189982	0.181924
chr13	41001829	41001929	5577356	0	-	0.4	(0.378,0.408]	chr13	533202	86	INTRON	INTRON	ELF1	ENSG00000120690.16	ENST00000239882.7:ENST00000405737.2	protein_coding	protein_coding	protein_coding	protein_coding	3	33	2	1.81685	2.021375	2.2259	0.0662381	0.0597868	0.189982	0.181924
chr17	50750300	50750400	6627301	0	+	0.4	(0.378,0.408]	chr17	647257	4	SS3_PROX	SS3_PROX:INTRON	LUC7L3	ENSG00000108848.16	ENST00000393227.6:ENST00000505658.6:ENST00000240304.5:ENST00000508482.5:ENST00000504065.5:ENST00000509487.1:ENST00000511974.5:ENST00000513969.5:ENST00000503728.1:ENST00000512549.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	33	2	1.81685	2.021375	2.2259	0.0662381	0.0597868	0.189982	0.181924
chr19	58401862	58401962	7107664	0	+	0.39	(0.378,0.408]	chr19	713460	2	SS5_PROX	SS5_PROX:INTRON	ZNF584	ENSG00000171574.18	ENST00000596921.5:ENST00000594993.1	protein_coding	processed_transcript	protein_coding	processed_transcript	3	33	2	1.81685	2.021375	2.2259	0.0662381	0.0597868	0.189982	0.181924
chr2	39341611	39341710	1103338	0	-	0.383838	(0.378,0.408]	chr2	118486	37	INTRON	INTRON	MAP4K3	ENSG00000011566.15	ENST00000263881.8:ENST00000437545.5:ENST00000341681.9:ENST00000429397.5:ENST00000437968.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	33	2	1.81685	2.021375	2.2259	0.0662381	0.0597868	0.189982	0.181924
chr2	173134139	173134239	921032	0	+	0.38	(0.378,0.408]	chr2	101411	426	INTRON	INTRON	MAP3K20	ENSG00000091436.17	ENST00000539448.5:ENST00000409176.6:ENST00000468408.5:ENST00000338983.7:ENST00000375213.8:ENST00000476618.5:ENST00000422149.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	33	2	1.81685	2.021375	2.2259	0.0662381	0.0597868	0.189982	0.181924
chr4	86971232	86971332	1994158	0	+	0.4	(0.378,0.408]	chr4	199032	223	INTRON	INTRON	AFF1	ENSG00000172493.23	ENST00000504956.5:ENST00000395146.9:ENST00000507468.5:ENST00000674009.1:ENST00000503477.5:ENST00000511996.5:ENST00000511442.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	33	2	1.81685	2.021375	2.2259	0.0662381	0.0597868	0.189982	0.181924
chr9	120463027	120463126	4332692	0	-	0.383838	(0.378,0.408]	chr9	398037	19	INTRON	INTRON	CDK5RAP2	ENSG00000136861.19	ENST00000349780.9:ENST00000360190.8:ENST00000687279.1:ENST00000687633.1:ENST00000684780.1:ENST00000687311.1:ENST00000479584.2:ENST00000690814.1:ENST00000686842.1:ENST00000693714.1:ENST00000693386.1:ENST00000692746.1:ENST00000686376.1:ENST00000692155.1:ENST00000690646.1:ENST00000693433.1:ENST00000688923.1:ENST00000473282.6:ENST00000480112.5:ENST00000685866.1:ENST00000689688.1:ENST00000416449.6:ENST00000691504.1:ENST00000360822.8:ENST00000693728.1:ENST00000483412.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	33	2	1.81685	2.021375	2.2259	0.0662381	0.0597868	0.189982	0.181924
chrX	45088353	45088452	7650788	0	+	0.393939	(0.378,0.408]	chrX	782848	20	INTRON	INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1:ENST00000675525.1:ENST00000414389.5:ENST00000675546.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	33	2	1.81685	2.021375	2.2259	0.0662381	0.0597868	0.189982	0.181924
chr7	73460118	73460218	3554463	0	-	0.43	(0.408,0.44]	chr7	330746	4	SS3_PROX	SS3_PROX:INTRON	BAZ1B	ENSG00000009954.11	ENST00000339594.9:ENST00000404251.1	protein_coding	protein_coding	protein_coding	protein_coding	11	111	2	1.65543	2.02133	2.38723	0.0193369	9.47391e-4	0.108861	0.0282007
chr7	111410299	111410399	3622589	0	-	0.4	(0.378,0.408]	chr7	337108	175	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000452895.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding	9	91	2	1.54163	2.0213099999999997	2.50099	0.0293591	0.00245021	0.128055	0.0457892
chr12	132999636	132999735	5252227	0	+	0.353535	(0.35,0.378]	chr12	499627	115	INTRON	INTRON	ZNF26	ENSG00000198393.8	ENST00000537956.1:ENST00000328654.10:ENST00000545101.1:ENST00000540238.5:ENST00000544181.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	65	2	1.59505	2.021275	2.4475	0.040425	0.0106974	0.161534	0.0862205
chr22	23183236	23183335	7483230	0	+	0.454545	(0.44,0.476]	chr22	763531	6	INTRON	INTRON	BCR	ENSG00000186716.21	ENST00000479188.5:ENST00000359540.7:ENST00000305877.13	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	16	164	2	1.81246	2.021245	2.23003	0.00516266	8.94195e-4	0.0651248	0.0276007
chr5	95732071	95732171	2431249	0	+	0.56	(0.515,0.57]	chr5	233638	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	RHOBTB3	ENSG00000164292.13	ENST00000510226.5:ENST00000504949.1:ENST00000506959.5:ENST00000506817.1:ENST00000379982.8:ENST00000512878.1:ENST00000510623.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	18	148	2	1.672	2.021245	2.37049	0.00585241	3.23495e-4	0.0668022	0.0159645
chr7	148820179	148820278	3670111	0	-	0.363636	(0.35,0.378]	chr7	340579	6	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	EZH2	ENSG00000106462.12	ENST00000683292.1:ENST00000320356.7:ENST00000492143.5:ENST00000478654.5:ENST00000350995.6:ENST00000460911.5:ENST00000683744.1:ENST00000684510.1:ENST00000682317.1:ENST00000682263.1:ENST00000684300.1:ENST00000476773.5:ENST00000483967.5:ENST00000498186.5:ENST00000483012.1:ENST00000682401.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	15	153	2	1.96377	2.021185	2.0786	0.00903914	0.00140612	0.0805265	0.0344145
chr7	99130371	99130471	3583008	0	-	0.46	(0.44,0.476]	chr7	333710	88	INTRON	INTRON	SMURF1	ENSG00000198742.10	ENST00000361368.7:ENST00000361125.1:ENST00000472627.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	44	2	1.85146	2.0211200000000002	2.19078	0.0545846	0.0226089	0.182529	0.117489
chr6	13678107	13678207	3058888	0	-	0.29	(0.28,0.32]	chr6	284542	189	INTRON	INTRON	RANBP9	ENSG00000010017.13	ENST00000011619.6	protein_coding	protein_coding	protein_coding	protein_coding	6	76	2	1.60333	2.021015	2.4387	0.0413158	0.0126802	0.161534	0.0926667
chr6	85621391	85621489	3151229	0	-	0.428571	(0.408,0.44]	chr6	293877	16	INTRON	INTRON	ENSG00000271793:SYNCRIP	ENSG00000271793.2:ENSG00000135316.19	ENST00000682083.1:ENST00000683074.1:ENST00000681965.1:ENST00000682504.1:ENST00000682106.1:ENST00000683364.1:ENST00000683436.1:ENST00000684220.1:ENST00000683909.1:ENST00000684462.1:ENST00000616122.5:ENST00000678528.1:ENST00000676637.1:ENST00000677771.1:ENST00000355238.11:ENST00000678878.1:ENST00000677481.1:ENST00000677646.1:ENST00000676630.1:ENST00000678618.1:ENST00000676542.1:ENST00000677059.1:ENST00000444272.2:ENST00000678899.1:ENST00000369622.8:ENST00000678355.1:ENST00000676688.1:ENST00000677514.1:ENST00000678816.1:ENST00000678930.1:ENST00000678589.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	101	2	1.67948	2.021	2.36252	0.0154364	0.00260554	0.108739	0.0455058
chr4	39455627	39455718	2129314	0	-	0.604396	(0.57,1]	chr4	209919	3	INTRON	INTRON	RPL9	ENSG00000163682.17	ENST00000645496.2:ENST00000295955.14:ENST00000503277.6:ENST00000508595.6:ENST00000449470.6:ENST00000506581.6:ENST00000644328.1:ENST00000503040.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	32	2	1.87172	2.02099	2.17026	0.0220522	0.0152293	0.123836	0.0996307
chr4	1996890	1996990	2095929	0	-	0.41	(0.408,0.44]	chr4	207403	44	INTRON	INTRON	NELFA	ENSG00000185049.16	ENST00000542778.5:ENST00000382882.9:ENST00000333877.8:ENST00000431323.6:ENST00000455762.5:ENST00000421397.5:ENST00000411649.3:ENST00000443203.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	102	2	1.70477	2.020985	2.3372	0.0215835	0.00122451	0.114814	0.0324961
chr15	92892472	92892572	6103604	0	+	0.42	(0.408,0.44]	chr15	581374	4	SS5_PROX	SS5_PROX:INTRON	CHASERR:ENSG00000279765	ENSG00000272888.8:ENSG00000279765.3	ENST00000653163.1:ENST00000557682.6:ENST00000556895.5:ENST00000629685.2:ENST00000554133.5:ENST00000630790.1:ENST00000555520.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	8	76	2	1.92735	2.0209099999999998	2.11447	0.0285207	0.00550465	0.12666	0.0672816
chr12	56678924	56679023	5335987	0	-	0.515152	(0.476,0.515]	chr12	510192	55	INTRON	INTRON	PTGES3	ENSG00000110958.16	ENST00000537473.2:ENST00000614328.4:ENST00000262033.11:ENST00000414274.7:ENST00000436399.6:ENST00000448157.6:ENST00000456859.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	59	2	1.4553	2.020725	2.58615	0.0623645	0.00515536	0.175357	0.0650394
chr19	4100640	4100734	7119301	0	-	0.414894	(0.408,0.44]	chr19	716149	14	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	MAP2K2	ENSG00000126934.15	ENST00000262948.10:ENST00000689792.1:ENST00000601786.5:ENST00000600584.5:ENST00000394867.9:ENST00000597263.5:ENST00000599021.1:ENST00000687128.1:ENST00000593364.5:ENST00000602167.5:ENST00000597008.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	10	94	2	1.50103	2.020585	2.54014	0.0237058	0.00255945	0.129075	0.0450085
chr1	42933561	42933661	432889	0	-	0.43	(0.408,0.44]	chr1	52489	19	INTRON	INTRON	SLC2A1	ENSG00000117394.24	ENST00000426263.10:ENST00000630287.2:ENST00000675112.1:ENST00000674765.1:ENST00000475162.3:ENST00000625233.2:ENST00000372500.4:ENST00000415851.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	32	2	1.85305	2.02056	2.18807	0.0708044	0.0543543	0.184528	0.182243
chr11	46066444	46066543	4944693	0	-	0.424242	(0.408,0.44]	chr11	463349	156	INTRON	INTRON	PHF21A	ENSG00000135365.17	ENST00000676320.1:ENST00000323180.10:ENST00000530587.6:ENST00000693049.1:ENST00000690620.1:ENST00000418153.6:ENST00000525676.6:ENST00000689695.1:ENST00000685188.1:ENST00000532883.5:ENST00000524497.5:ENST00000531959.5:ENST00000687985.1:ENST00000693122.1:ENST00000529734.5:ENST00000529782.5:ENST00000688222.1:ENST00000691784.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	32	2	1.85305	2.02056	2.18807	0.0708044	0.0543543	0.184528	0.182243
chr13	19846465	19846565	5553183	0	-	0.41	(0.408,0.44]	chr13	530759	71	INTRON	INTRON	ZMYM5	ENSG00000132950.19	ENST00000337963.9:ENST00000535942.5:ENST00000382909.5:ENST00000382907.8:ENST00000382905.8:ENST00000467542.5:ENST00000495534.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	32	2	1.85305	2.02056	2.18807	0.0708044	0.0543543	0.184528	0.182243
chr14	49675726	49675826	5886381	0	-	0.41	(0.408,0.44]	chr14	558612	9	INTRON	INTRON	POLE2	ENSG00000100479.13	ENST00000216367.10:ENST00000539565.6:ENST00000556584.5:ENST00000554396.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	32	2	1.85305	2.02056	2.18807	0.0708044	0.0543543	0.184528	0.182243
chr15	44569097	44569197	6163772	0	-	0.42	(0.408,0.44]	chr15	587219	3	SS5_PROX	SS5_PROX:INTRON	SPG11	ENSG00000104133.16	ENST00000684235.1:ENST00000261866.12:ENST00000559511.6:ENST00000682065.1:ENST00000682669.1:ENST00000683496.1:ENST00000682460.1:ENST00000682495.1:ENST00000684038.1:ENST00000683186.1:ENST00000683734.1:ENST00000683753.1:ENST00000535302.6:ENST00000427534.6:ENST00000558138.2:ENST00000559347.1:ENST00000561268.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	32	2	1.85305	2.02056	2.18807	0.0708044	0.0543543	0.184528	0.182243
chr5	113528483	113528583	2454006	0	+	0.41	(0.408,0.44]	chr5	235157	13	INTRON	INTRON	YTHDC2	ENSG00000047188.16	ENST00000161863.9:ENST00000503857.5:ENST00000515883.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	32	2	1.85305	2.02056	2.18807	0.0708044	0.0543543	0.184528	0.182243
chr6	150207148	150207248	2997417	0	+	0.42	(0.408,0.44]	chr6	280443	633	INTRON	INTRON	PPP1R14C	ENSG00000198729.5	ENST00000361131.5	protein_coding	protein_coding	protein_coding	protein_coding	3	32	2	1.85305	2.02056	2.18807	0.0708044	0.0543543	0.184528	0.182243
chr7	39967711	39967811	3310796	0	+	0.41	(0.408,0.44]	chr7	307478	149	INTRON	INTRON	CDK13	ENSG00000065883.17	ENST00000340829.10:ENST00000181839.10:ENST00000613626.4:ENST00000646039.1:ENST00000643859.1	protein_coding	protein_coding	protein_coding	protein_coding	3	32	2	1.85305	2.02056	2.18807	0.0708044	0.0543543	0.184528	0.182243
chr7	158640187	158640285	3688112	0	-	0.438776	(0.408,0.44]	chr7	342109	5	UTR3	UTR3:EXON_MRNA:INTRON	NCAPG2	ENSG00000146918.20	ENST00000356309.8:ENST00000432615.5:ENST00000409423.5:ENST00000441982.5:ENST00000467785.5:ENST00000409339.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	32	2	1.85305	2.02056	2.18807	0.0708044	0.0543543	0.184528	0.182243
chr8	116658436	116658530	4033251	0	-	0.425532	(0.408,0.44]	chr8	368042	3	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	EIF3H	ENSG00000147677.12	ENST00000521861.6:ENST00000276682.8:ENST00000518949.5:ENST00000518995.5:ENST00000522800.5:ENST00000518034.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	32	2	1.85305	2.02056	2.18807	0.0708044	0.0543543	0.184528	0.182243
chr2	172597269	172597369	920322	0	+	0.44	(0.408,0.44]	chr2	101391	14	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	PDK1	ENSG00000152256.14	ENST00000410055.5:ENST00000282077.8	protein_coding	protein_coding	protein_coding	protein_coding	26	257	2	1.97516	2.020335	2.06551	9.51375e-4	7.186e-4	0.0282265	0.0244611
chr22	23183932	23184031	7483237	0	+	0.484848	(0.476,0.515]	chr22	763531	13	INTRON	INTRON	BCR	ENSG00000186716.21	ENST00000479188.5:ENST00000359540.7:ENST00000305877.13	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	74	2	1.53534	2.02011	2.50488	0.0476737	0.00285353	0.170116	0.0474836
chr7	103100861	103100959	3592406	0	-	0.387755	(0.378,0.408]	chr7	335278	12	UTR3	UTR3:EXON_MRNA	NAPEPLD	ENSG00000161048.12	ENST00000341533.8:ENST00000465647.6:ENST00000414118.2:ENST00000417955.5:ENST00000422589.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	54	2	1.78011	2.0201000000000002	2.26009	0.0356367	0.0188651	0.151629	0.108861
chr1	38997471	38997570	74460	0	+	0.383838	(0.378,0.408]	chr1	9628	55	INTRON	INTRON	AKIRIN1	ENSG00000174574.16	ENST00000432648.8:ENST00000372984.8:ENST00000446189.6:ENST00000531822.1	protein_coding	protein_coding	protein_coding	protein_coding	8	86	2	1.9714	2.02006	2.06872	0.0109363	0.00895678	0.0924799	0.0800073
chr7	87154289	87154378	3345636	0	+	0.325843	(0.32,0.35]	chr7	311619	1	SSB_ADJ	SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DMTF1	ENSG00000135164.19	ENST00000413276.6:ENST00000447863.5:ENST00000579677.5:ENST00000425406.5:ENST00000446796.6:ENST00000420131.5:ENST00000414630.6:ENST00000547146.6:ENST00000579850.5:ENST00000453049.5:ENST00000331242.12:ENST00000430405.7:ENST00000449088.7:ENST00000448598.5:ENST00000428819.5:ENST00000432937.6:ENST00000584619.5:ENST00000432366.6:ENST00000423590.6:ENST00000394703.9:ENST00000584457.5:ENST00000580710.5:ENST00000579592.5:ENST00000434534.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	14	166	2	2.00592	2.0200500000000003	2.03418	0.00403814	0.00316405	0.0555269	0.0516639
chr10	63347379	63347479	4634204	0	-	0.52	(0.515,0.57]	chr10	426226	783	INTRON	INTRON	JMJD1C	ENSG00000171988.20	ENST00000399262.7:ENST00000633035.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	45	2	1.60221	2.0200199999999997	2.43783	0.0581855	0.00916404	0.188704	0.0812949
chr7	27661399	27661499	3510930	0	-	0.54	(0.515,0.57]	chr7	327353	114	INTRON	INTRON	HIBADH	ENSG00000106049.9	ENST00000265395.7:ENST00000428288.2:ENST00000496814.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	45	2	1.60221	2.0200199999999997	2.43783	0.0581855	0.00916404	0.188704	0.0812949
chr13	113186739	113186838	5651830	0	-	0.575758	(0.57,1]	chr13	538587	13	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	PCID2	ENSG00000126226.22	ENST00000337344.9:ENST00000622406.4:ENST00000375479.6:ENST00000375477.5:ENST00000246505.9:ENST00000375459.5:ENST00000493650.5:ENST00000375457.2:ENST00000473462.5:ENST00000475433.5:ENST00000480971.5:ENST00000484641.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	31	2	1.46969	2.019825	2.56996	0.0586892	0.00499145	0.167915	0.0646039
chr5	88207080	88207126	2669115	0	-	0.326087	(0.32,0.35]	chr5	252653	1	CDS	CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA	TMEM161B	ENSG00000164180.14	ENST00000514135.5:ENST00000296595.11:ENST00000511087.5:ENST00000510089.5:ENST00000506536.5:ENST00000511218.5:ENST00000512429.5:ENST00000507872.1:ENST00000509387.5:ENST00000503755.5:ENST00000513487.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	52	2	1.59364	2.01972	2.4458	0.0425977	0.0413426	0.161557	0.148082
chr1	21725990	21726090	396278	0	-	0.34	(0.32,0.35]	chr1	47276	1	SS5_PROX	SS5_PROX:INTRON	USP48	ENSG00000090686.16	ENST00000400301.5:ENST00000308271.14:ENST00000529637.5:ENST00000487880.2:ENST00000526044.5:ENST00000534705.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	18	205	2	1.9751	2.01955	2.064	0.00355682	0.00147764	0.0530653	0.0353302
chr11	65443443	65443542	4805977	0	+	0.383838	(0.378,0.408]	chr11	446554	208	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	75	730	2	2.00471	2.0195	2.03429	4.11222e-4	9.47108e-5	0.0186319	0.00816803
chr12	122889103	122889199	5442508	0	-	0.489583	(0.476,0.515]	chr12	520624	6	UTR5	UTR5:EXON_MRNA:INTRON	VPS37B	ENSG00000139722.7	ENST00000267202.7:ENST00000535765.5:ENST00000371248.3	protein_coding	protein_coding	protein_coding	protein_coding	5	53	2	1.97402	2.019465	2.06491	0.0304733	0.0206778	0.143385	0.110999
chr16	18890462	18890562	6457744	0	-	0.51	(0.476,0.515]	chr16	622862	2	SS5_PROX	SS5_PROX:INTRON	SMG1	ENSG00000157106.18	ENST00000446231.7:ENST00000565324.5:ENST00000561947.5:ENST00000565224.5:ENST00000532700.6	protein_coding	protein_coding	protein_coding	protein_coding	6	49	2	1.33919	2.01943	2.69967	0.06316	0.0195838	0.197199	0.109483
chr6	107895772	107895870	3182205	0	-	0.479592	(0.476,0.515]	chr6	296388	15	INTRON	INTRON	SEC63	ENSG00000025796.14	ENST00000369002.9:ENST00000466419.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	49	2	1.33919	2.01943	2.69967	0.06316	0.0195838	0.197199	0.109483
chr5	54330808	54330908	2353929	0	+	0.44	(0.408,0.44]	chr5	227055	75	INTRON	INTRON	LINC01033	ENSG00000249069.8	ENST00000665899.1:ENST00000653566.1:ENST00000655801.1:ENST00000654906.1:ENST00000667636.1:ENST00000665869.1:ENST00000664079.1:ENST00000659703.1:ENST00000662351.1:ENST00000523194.7:ENST00000665795.1:ENST00000667992.1:ENST00000662022.1:ENST00000657771.1:ENST00000517934.1	lncRNA	lncRNA	lncRNA	lncRNA	12	117	2	1.41217	2.0194	2.62663	0.0272418	7.7144e-4	0.136494	0.0255407
chr12	24845209	24845308	5296865	0	-	0.323232	(0.32,0.35]	chr12	503847	26	INTRON	INTRON	BCAT1	ENSG00000060982.15	ENST00000261192.12:ENST00000538118.5:ENST00000342945.9:ENST00000539282.5:ENST00000539780.5:ENST00000544418.1:ENST00000612790.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:processed_transcript	11	117	2	1.64981	2.0193149999999997	2.38882	0.0117401	0.00566663	0.0962115	0.0653997
chr16	89424209	89424308	6542937	0	-	0.525253	(0.515,0.57]	chr16	634275	21	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	61	2	1.91916	2.01931	2.11946	0.0231902	0.00559899	0.118148	0.0678837
chr5	159200067	159200166	2759093	0	-	0.494949	(0.476,0.515]	chr5	260362	49	INTRON	INTRON	RNF145	ENSG00000145860.12	ENST00000424310.7:ENST00000519865.5:ENST00000274542.6:ENST00000611185.4:ENST00000521606.6:ENST00000518802.5:ENST00000520638.1:ENST00000520548.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	71	2	1.93059	2.019285	2.10798	0.023762	0.00628634	0.118822	0.0722266
chr17	48624015	48624110	6791508	0	-	0.452632	(0.44,0.476]	chr17	670058	5	INTRON	INTRON	HOXB7:HOXB9	ENSG00000260027.5:ENSG00000170689.10	ENST00000567101.2:ENST00000311177.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	79	2	1.78423	2.019265	2.2543	0.0143065	0.00787184	0.104058	0.076155
chr17	22109493	22109593	6578758	0	+	0.56	(0.515,0.57]	chr17	639556	182	INTRON	INTRON	UBBP4	ENSG00000263563.7	ENST00000648259.1:ENST00000688301.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	18	151	2	1.93448	2.019225	2.10397	0.00235842	7.65398e-4	0.0436827	0.025449
chr12	118382319	118382418	5234457	0	+	0.474747	(0.44,0.476]	chr12	496607	17	INTRON	INTRON	SUDS3	ENSG00000111707.12	ENST00000543473.2	protein_coding	protein_coding	protein_coding	protein_coding	7	71	2	2.00793	2.019135	2.03034	0.0173569	0.00937685	0.104189	0.0859966
chr15	64368967	64369066	6204963	0	-	0.323232	(0.32,0.35]	chr15	591787	25	INTRON	INTRON	ENSG00000259316:PCLAF	ENSG00000259316.12:ENSG00000166803.14	ENST00000634251.1:ENST00000634847.3:ENST00000634318.1:ENST00000635160.1:ENST00000635704.1:ENST00000634529.1:ENST00000635511.1:ENST00000635605.1:ENST00000635593.1:ENST00000634259.2:ENST00000560278.2:ENST00000635413.1:ENST00000634538.1:ENST00000635320.1:ENST00000558783.2:ENST00000300035.9:ENST00000380258.6:ENST00000559519.5:ENST00000558008.3:ENST00000558043.5:ENST00000560234.1:ENST00000559280.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	73	2	1.8903	2.019115	2.14793	0.0298043	0.0110079	0.129138	0.0927187
chr16	85618975	85619075	6416026	0	+	0.53	(0.515,0.57]	chr16	615481	52	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1:ENST00000405402.6:ENST00000411612.5:ENST00000253458.12:ENST00000393243.5	protein_coding	protein_coding	protein_coding	protein_coding	4	33	2	1.60221	2.01905	2.43589	0.0581855	0.0370871	0.188704	0.139194
chr7	128625396	128625496	3408311	0	+	0.53	(0.515,0.57]	chr7	318407	2	SS3_PROX	SS3_PROX:INTRON	ENSG00000242588	ENSG00000242588.6	ENST00000605862.5	lncRNA	lncRNA	lncRNA	lncRNA	4	33	2	1.60221	2.01905	2.43589	0.0581855	0.0370871	0.188704	0.139194
chr17	16455315	16455414	6562813	0	+	0.424242	(0.408,0.44]	chr17	637925	134	INTRON	INTRON	SNHG29	ENSG00000175061.19	ENST00000584177.5:ENST00000665646.1:ENST00000660419.1:ENST00000668333.1:ENST00000664939.1:ENST00000583400.7:ENST00000669136.1:ENST00000580770.5:ENST00000581718.6:ENST00000579473.6:ENST00000581361.5:ENST00000692724.1:ENST00000689691.1:ENST00000686699.1:ENST00000472367.5:ENST00000483588.2:ENST00000478103.6:ENST00000658943.1	lncRNA	lncRNA	lncRNA	lncRNA	6	60	2	1.53812	2.018975	2.49983	0.0501609	0.00713527	0.156383	0.0756118
chr10	73776985	73777081	4454099	0	+	0.385417	(0.378,0.408]	chr10	411177	9	INTRON	INTRON	FUT11	ENSG00000196968.11	ENST00000489264.2	protein_coding	processed_transcript	protein_coding	processed_transcript	15	139	2	1.35368	2.01897	2.68426	0.0228331	6.27248e-4	0.125506	0.0230267
chr5	54295511	54295611	2620768	0	-	0.35	(0.32,0.35]	chr5	248862	93	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2:ENST00000505630.5:ENST00000505383.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	93	2	1.93994	2.018935	2.09793	0.0156788	0.0084207	0.101453	0.0825628
chr14	49671272	49671370	5886334	0	-	0.5	(0.476,0.515]	chr14	558602	13	INTRON	INTRON	POLE2	ENSG00000100479.13	ENST00000216367.10:ENST00000539565.6:ENST00000556584.5:ENST00000554396.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	52	2	1.83961	2.01885	2.19809	0.0314489	0.020317	0.13151	0.121522
chr3	47159930	47160029	1681564	0	-	0.454545	(0.44,0.476]	chr3	171624	329	INTRON	INTRON	SETD2	ENSG00000181555.22	ENST00000691544.1:ENST00000638947.2:ENST00000409792.4:ENST00000412450.1	protein_coding	protein_coding	protein_coding	protein_coding	11	100	2	1.71572	2.01878	2.32184	0.00799594	0.00609071	0.0800492	0.0676501
chr6	169667683	169667782	3266776	0	-	0.606061	(0.57,1]	chr6	303226	6	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	WDR27	ENSG00000184465.16	ENST00000448612.6:ENST00000648472.1:ENST00000423258.5:ENST00000647790.1:ENST00000647873.1:ENST00000649303.1:ENST00000647889.1:ENST00000648017.1:ENST00000496752.1:ENST00000650296.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	41	2	1.66359	2.018625	2.37366	0.0224545	0.00373392	0.124921	0.0535844
chr7	121050699	121050799	3394260	0	+	0.59	(0.57,1]	chr7	317693	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	CPED1	ENSG00000106034.18	ENST00000340646.9:ENST00000310396.10:ENST00000428526.5:ENST00000495036.5:ENST00000450913.6:ENST00000520801.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	41	2	1.66359	2.018625	2.37366	0.0224545	0.00373392	0.124921	0.0535844
chr19	28516921	28517021	7166264	0	-	0.23	[0,0.28]	chr19	724189	487	INTRON	INTRON	ENSG00000283403:ENSG00000267243	ENSG00000283403.1:ENSG00000267243.6	ENST00000592347.5:ENST00000593065.5	lncRNA	lncRNA	lncRNA	lncRNA	11	164	2	1.52961	2.0185199999999996	2.50743	0.0394621	9.24426e-4	0.143072	0.0278442
chr16	8069222	8069322	6441201	0	-	0.38	(0.378,0.408]	chr16	620351	616	INTRON	INTRON	ENSG00000260289	ENSG00000260289.2	ENST00000670665.1:ENST00000654046.1:ENST00000567103.2	lncRNA	lncRNA	lncRNA	lncRNA	10	104	2	1.74904	2.018485	2.28793	0.0141676	0.00291235	0.0959618	0.0494641
chr6	88275414	88275513	3153902	0	-	0.242424	[0,0.28]	chr6	294127	966	INTRON	INTRON	ENSG00000234426	ENSG00000234426.3	ENST00000648572.1	lncRNA	lncRNA	lncRNA	lncRNA	5	76	2	1.66484	2.01837	2.3719	0.0617844	0.0139689	0.174281	0.10247
chr17	76734308	76734406	6844227	0	-	0.438776	(0.408,0.44]	chr17	677087	3	UTR3	UTR3:EXON_MRNA	SRSF2	ENSG00000161547.17	ENST00000392485.2:ENST00000359995.10:ENST00000585202.5:ENST00000582449.5:ENST00000586778.1:ENST00000452355.7:ENST00000589919.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	26	248	2	1.50584	2.018275	2.53071	0.00655058	1.35535e-4	0.0735539	0.0106542
chr8	100703954	100704054	4005391	0	-	0.57	(0.515,0.57]	chr8	366565	7	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	PABPC1	ENSG00000070756.17	ENST00000518293.5:ENST00000677140.1:ENST00000677787.1:ENST00000678709.1:ENST00000676662.1:ENST00000677765.1:ENST00000677892.1:ENST00000522720.2:ENST00000520804.2:ENST00000521865.6:ENST00000677478.1:ENST00000677380.1:ENST00000520142.2:ENST00000677775.1:ENST00000678954.1:ENST00000676655.1:ENST00000676976.1:ENST00000678290.1:ENST00000318607.10:ENST00000520868.5:ENST00000679197.1:ENST00000519100.6:ENST00000519004.5:ENST00000677285.1:ENST00000522387.5:ENST00000523636.5:ENST00000517990.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	53	2	1.8661	2.018245	2.17039	0.0274846	0.00900252	0.123904	0.0851009
chr19	4413242	4413342	7001869	0	+	0.57	(0.515,0.57]	chr19	694523	31	INTRON	INTRON	CHAF1A	ENSG00000167670.16	ENST00000301280.10:ENST00000587739.1	protein_coding	protein_coding	protein_coding	protein_coding	6	44	2	1.28871	2.018215	2.74772	0.0731249	0.0142192	0.189597	0.103638
chr2	61400619	61400719	1129849	0	-	0.51	(0.476,0.515]	chr2	121485	50	INTRON	INTRON	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000453133.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	82	2	1.16233	2.018195	2.87406	0.0635535	0.00188729	0.198287	0.0391691
chr6	15334522	15334622	2823832	0	+	0.41	(0.408,0.44]	chr6	265192	196	INTRON	INTRON	JARID2	ENSG00000008083.14	ENST00000341776.7:ENST00000397311.4	protein_coding	protein_coding	protein_coding	protein_coding	9	93	2	1.74813	2.01815	2.28817	0.0163902	0.00358507	0.109715	0.0533855
chr16	84985875	84985974	6533911	0	-	0.424242	(0.408,0.44]	chr16	633131	35	INTRON	INTRON	ZDHHC7	ENSG00000153786.13	ENST00000313732.9:ENST00000344861.9:ENST00000564466.5:ENST00000569488.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	66	2	1.58622	2.018125	2.45003	0.0291748	0.00990006	0.141552	0.0838372
chr5	181256897	181256996	2563436	0	+	0.40404	(0.378,0.408]	chr5	245313	13	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	CTC-338M12.4	ENSG00000233937.8	ENST00000506340.3:ENST00000505151.6:ENST00000511331.5:ENST00000417281.2:ENST00000599439.2	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	15	156	2	1.92997	2.018055	2.10614	0.00301953	0.0024142	0.0507747	0.0442853
chr8	22610836	22610935	3714418	0	+	0.353535	(0.35,0.378]	chr8	345003	24	INTRON	INTRON	CCAR2	ENSG00000158941.17	ENST00000308511.9:ENST00000389279.7:ENST00000520861.5	protein_coding	protein_coding	protein_coding	protein_coding	6	68	2	1.87726	2.018015	2.15877	0.0297629	0.0102036	0.12908	0.089002
chr1	113087322	113087422	188235	0	+	0.4	(0.378,0.408]	chr1	20854	133	INTRON	INTRON	LRIG2	ENSG00000198799.12	ENST00000361127.6	protein_coding	protein_coding	protein_coding	protein_coding	13	135	2	1.81973	2.01796	2.21619	0.0108435	9.55992e-4	0.0873034	0.0284395
chr21	39303767	39303866	7465444	0	-	0.424242	(0.408,0.44]	chr21	760568	48	INTRON	INTRON	BRWD1	ENSG00000185658.14	ENST00000333229.6:ENST00000342449.8:ENST00000380800.7:ENST00000341322.4:ENST00000470108.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	94	2	1.77132	2.01786	2.2644	0.00801449	0.00768371	0.0802185	0.0753803
chr1	32792931	32793029	415915	0	-	0.336735	(0.32,0.35]	chr1	50188	13	INTRON	INTRON	YARS1	ENSG00000134684.13	ENST00000373477.9:ENST00000676297.1:ENST00000674654.1:ENST00000674629.1:ENST00000675785.2:ENST00000481895.6:ENST00000616261.2:ENST00000466052.1:ENST00000470377.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	45	2	1.72898	2.017855	2.30673	0.0584434	0.0425433	0.167723	0.161951
chr1	77575172	77575271	492372	0	-	0.333333	(0.32,0.35]	chr1	58255	64	INTRON	INTRON	ZZZ3	ENSG00000036549.13	ENST00000370801.8:ENST00000481346.5:ENST00000476275.5:ENST00000370798.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	45	2	1.72898	2.017855	2.30673	0.0584434	0.0425433	0.167723	0.161951
chr20	38069031	38069130	7269237	0	+	0.343434	(0.32,0.35]	chr20	738712	24	INTRON	INTRON	RPRD1B	ENSG00000101413.12	ENST00000462548.6:ENST00000373433.9:ENST00000449186.2:ENST00000618318.1:ENST00000614670.1:ENST00000622494.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	45	2	1.72898	2.017855	2.30673	0.0584434	0.0425433	0.167723	0.161951
chr7	151103509	151103608	3448522	0	+	0.484848	(0.476,0.515]	chr7	322165	126	INTRON	INTRON	AGAP3	ENSG00000133612.19	ENST00000490097.5:ENST00000463381.5:ENST00000397238.7:ENST00000622464.4:ENST00000479901.5:ENST00000473312.5:ENST00000469901.5:ENST00000476375.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	62	2	2.01618	2.017855	2.01953	0.0180082	0.0163662	0.109586	0.106756
chr3	177174210	177174309	1872216	0	-	0.515152	(0.476,0.515]	chr3	187438	29	INTRON	INTRON	TBL1XR1	ENSG00000177565.18	ENST00000457928.7:ENST00000430069.5:ENST00000673974.1:ENST00000352800.10:ENST00000422442.6:ENST00000428970.5:ENST00000424913.5:ENST00000437738.5:ENST00000431421.5:ENST00000635794.1:ENST00000630796.2:ENST00000450267.5:ENST00000630833.2:ENST00000431674.5:ENST00000422066.5:ENST00000443315.5:ENST00000627825.2:ENST00000427349.5:ENST00000413084.5:ENST00000637137.1:ENST00000491623.2:ENST00000637544.1:ENST00000636187.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	79	2	1.6612	2.01784	2.37448	0.0245383	0.00419067	0.12011	0.0591344
chr8	92876713	92876813	3990873	0	-	0.33	(0.32,0.35]	chr8	365359	16	EXON_MRNA	EXON_MRNA:INTRON	FLJ46284	ENSG00000248858.7	ENST00000504861.2:ENST00000623616.1	lncRNA	TEC	lncRNA	TEC:lncRNA	13	143	2	1.43949	2.017815	2.59614	0.0226075	0.00119813	0.124921	0.0315806
chr17	75177988	75178087	6836330	0	-	0.464646	(0.44,0.476]	chr17	675507	28	INTRON	INTRON	SUMO2	ENSG00000188612.12	ENST00000420826.7:ENST00000314523.7:ENST00000578238.2	protein_coding	protein_coding	protein_coding	protein_coding	5	53	2	1.77101	2.017765	2.26452	0.0693975	0.00654074	0.184298	0.0735539
chr9	111364258	111364358	4314040	0	-	0.46	(0.44,0.476]	chr9	396591	2	INTRON	INTRON	ECPAS	ENSG00000136813.15	ENST00000684092.1:ENST00000338205.9:ENST00000259335.8:ENST00000374383.1	protein_coding	protein_coding	protein_coding	protein_coding	5	53	2	1.77101	2.017765	2.26452	0.0693975	0.00654074	0.184298	0.0735539
chr12	68630659	68630758	5161404	0	+	0.444444	(0.44,0.476]	chr12	488585	54	INTRON	INTRON	RAP1B	ENSG00000127314.18	ENST00000460800.5:ENST00000393436.9:ENST00000250559.14:ENST00000425247.6:ENST00000501412.2:ENST00000450214.6:ENST00000463493.5:ENST00000537460.5:ENST00000341355.9:ENST00000538283.5:ENST00000541167.5:ENST00000422358.6:ENST00000489473.6:ENST00000545270.5:ENST00000538980.5:ENST00000543393.5:ENST00000542018.5:ENST00000540209.5:ENST00000378985.7:ENST00000453560.6:ENST00000534899.5:ENST00000542145.5:ENST00000539091.5:ENST00000535492.5:ENST00000540781.5:ENST00000485252.6:ENST00000538877.5:ENST00000541386.5:ENST00000543697.5:ENST00000545720.6:ENST00000541216.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	13	131	2	1.49345	2.017615	2.54178	0.0271885	2.3189e-4	0.123904	0.0134553
chr19	11106355	11106424	7016988	0	+	0.507246	(0.476,0.515]	chr19	697441	1	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	LDLR	ENSG00000130164.14	ENST00000557933.5:ENST00000558518.6:ENST00000545707.5:ENST00000535915.5:ENST00000455727.6:ENST00000558013.5:ENST00000252444.9:ENST00000560467.1:ENST00000558528.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	11	110	2	1.89129	2.0175899999999998	2.14389	0.00569336	0.00540862	0.066545000000000007	0.065612
chr10	6095351	6095451	4385753	0	+	0.47	(0.44,0.476]	chr10	404761	50	INTRON	INTRON	RBM17	ENSG00000134453.16	ENST00000379888.9:ENST00000437845.6:ENST00000432931.5:ENST00000446108.5	protein_coding	protein_coding	protein_coding	protein_coding	5	45	2	1.65297	2.01758	2.38219	0.045456	0.0331814	0.149888	0.145918
chr19	36551081	36551179	7174676	0	-	0.397959	(0.378,0.408]	chr19	725068	24	INTRON	INTRON	ZNF529	ENSG00000186020.13	ENST00000591340.6:ENST00000334116.7:ENST00000586115.5:ENST00000585983.5:ENST00000585960.5	protein_coding	protein_coding	protein_coding	protein_coding	6	65	2	1.98888	2.01755	2.04622	0.0205239	0.0149927	0.110999	0.107704
chr2	111832228	111832326	1214343	0	-	0.469388	(0.44,0.476]	chr2	129130	4	INTRON	INTRON	ANAPC1	ENSG00000153107.13	ENST00000427997.5:ENST00000341068.8	protein_coding	protein_coding	protein_coding	protein_coding	6	61	2	1.76195	2.017495	2.27304	0.0252608	0.0158915	0.12011	0.109464
chr10	5923024	5923120	4385529	0	+	0.541667	(0.515,0.57]	chr10	404711	11	INTRON	INTRON	FBH1	ENSG00000134452.20	ENST00000397269.7:ENST00000362091.9:ENST00000379999.6:ENST00000475867.5:ENST00000461504.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	37	2	1.94945	2.01746	2.08547	0.0414068	0.0289426	0.161557	0.1274
chr1	119157396	119157496	199908	0	+	0.47	(0.44,0.476]	chr1	22183	61	INTRON	INTRON	WARS2-AS1	ENSG00000231365.7	ENST00000667138.1:ENST00000440150.5:ENST00000670000.1:ENST00000418015.1:ENST00000413531.5:ENST00000667936.1:ENST00000685192.1:ENST00000445565.2	lncRNA	lncRNA	lncRNA	lncRNA	5	56	2	1.85146	2.01745	2.18344	0.0545846	0.0102102	0.182529	0.0850389
chr1	1573180	1573280	360306	0	-	0.42	(0.408,0.44]	chr1	41853	79	INTRON	INTRON	SSU72	ENSG00000160075.12	ENST00000291386.4:ENST00000378725.3:ENST00000359060.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	39	2	1.75791	2.017445	2.27698	0.0583528	0.0378795	0.167723	0.157034
chr1	220019656	220019733	638915	0	-	0.376623	(0.35,0.378]	chr1	75279	2	SS5_PROX	SS5_PROX:INTRON	EPRS1	ENSG00000136628.18	ENST00000366923.8:ENST00000609181.5:ENST00000477030.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	42	2	1.71046	2.017445	2.32443	0.0544216	0.0441269	0.164972	0.162255
chr14	75651162	75651260	5924806	0	-	0.428571	(0.408,0.44]	chr14	563207	15	UTR3	UTR3:EXON_MRNA	ERG28	ENSG00000133935.7	ENST00000256319.7	protein_coding	protein_coding	protein_coding	protein_coding	4	39	2	1.75791	2.017445	2.27698	0.0583528	0.0378795	0.167723	0.157034
chr16	11715624	11715724	6444923	0	-	0.41	(0.408,0.44]	chr16	620808	115	INTRON	INTRON	TXNDC11	ENSG00000153066.13	ENST00000283033.10:ENST00000356957.7:ENST00000575591.1:ENST00000576969.5:ENST00000571882.1:ENST00000573174.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	39	2	1.75791	2.017445	2.27698	0.0583528	0.0378795	0.167723	0.157034
chr8	127801154	127801254	3860108	0	+	0.43	(0.408,0.44]	chr8	355380	47	INTRON	INTRON	PVT1	ENSG00000249859.13	ENST00000667305.1:ENST00000690350.1:ENST00000653522.1:ENST00000664214.1:ENST00000664139.1:ENST00000661830.1:ENST00000657289.1:ENST00000504719.7:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000656880.1:ENST00000660200.1:ENST00000669132.1:ENST00000657211.1:ENST00000653845.1:ENST00000517525.2:ENST00000665856.1:ENST00000651587.1:ENST00000692980.1:ENST00000666353.1:ENST00000657183.1:ENST00000654324.1:ENST00000658556.1:ENST00000657693.1:ENST00000666080.1:ENST00000667539.1:ENST00000521951.1:ENST00000524165.6:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000664293.1:ENST00000657297.1:ENST00000662410.1:ENST00000670795.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000654091.1:ENST00000523328.6:ENST00000657356.1:ENST00000523427.2:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000662061.1:ENST00000667204.1:ENST00000656491.1:ENST00000667714.1:ENST00000654105.1:ENST00000665721.1:ENST00000518528.2:ENST00000669416.1:ENST00000660438.1:ENST00000661160.1:ENST00000659326.1:ENST00000665246.1:ENST00000657384.1:ENST00000666842.1:ENST00000517790.2:ENST00000522963.6:ENST00000654369.1:ENST00000661625.1:ENST00000657596.1:ENST00000664995.1:ENST00000656532.1:ENST00000656168.1:ENST00000661988.1:ENST00000657517.1:ENST00000670714.1:ENST00000669951.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000656693.1:ENST00000668123.1:ENST00000666776.1:ENST00000664299.1:ENST00000669272.1:ENST00000659912.1:ENST00000670532.1:ENST00000660896.1:ENST00000667149.1:ENST00000656396.1:ENST00000523068.2	lncRNA	lncRNA	lncRNA	lncRNA	4	39	2	1.75791	2.017445	2.27698	0.0583528	0.0378795	0.167723	0.157034
chr9	124744040	124744140	4348943	0	-	0.44	(0.408,0.44]	chr9	399261	103	INTRON	INTRON	NR6A1	ENSG00000148200.17	ENST00000487099.7:ENST00000373584.7:ENST00000416460.6:ENST00000344523.8	protein_coding	protein_coding	protein_coding	protein_coding	4	39	2	1.75791	2.017445	2.27698	0.0583528	0.0378795	0.167723	0.157034
chr7	119752575	119752675	3628864	0	-	0.25	[0,0.28]	chr7	337322	4	SS3_PROX	SS3_PROX:INTRON	LINC02476	ENSG00000225546.6	ENST00000660268.1:ENST00000431071.5:ENST00000426413.2	lncRNA	lncRNA	lncRNA	lncRNA	11	163	2	1.85973	2.01729	2.17485	0.0181687	0.00275723	0.107604	0.0486216
chr17	45060015	45060115	6782193	0	-	0.55	(0.515,0.57]	chr17	669018	2	SS5_PROX	SS5_PROX:INTRON	DCAKD	ENSG00000172992.13	ENST00000342350.10:ENST00000310604.9:ENST00000687739.1:ENST00000688897.1:ENST00000688577.1:ENST00000588499.6:ENST00000692180.1:ENST00000693065.1:ENST00000691739.1:ENST00000687525.1:ENST00000687463.1:ENST00000685712.1:ENST00000692907.1:ENST00000689764.1:ENST00000688568.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	55	2	1.7492	2.01727	2.28534	0.0382504	0.0061678	0.15832	0.067653
chr3	43725811	43725911	1410536	0	+	0.35	(0.32,0.35]	chr3	147966	32	INTRON	INTRON	ABHD5	ENSG00000011198.10	ENST00000649763.1:ENST00000454293.2:ENST00000463153.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	73	2	1.73318	2.01714	2.3011	0.0462868	0.00617969	0.150684	0.0713552
chr10	71823093	71823191	4642549	0	-	0.377551	(0.35,0.378]	chr10	427136	7	INTRON	INTRON	PSAP	ENSG00000197746.15	ENST00000394936.8:ENST00000633965.1	protein_coding	protein_coding	protein_coding	protein_coding	12	131	2	1.85213	2.017105	2.18208	0.0137208	0.00122332	0.0949306	0.0324786
chr18	13044412	13044510	6877117	0	+	0.295918	(0.28,0.32]	chr18	681428	17	INTRON	INTRON	CEP192	ENSG00000101639.19	ENST00000325971.12:ENST00000506447.5:ENST00000589596.5:ENST00000513432.5:ENST00000511820.6:ENST00000510237.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	55	2	2.00989	2.0170950000000003	2.0243	0.0427801	0.0364967	0.153759	0.148082
chr21	9350630	9350730	7367639	0	+	0.31	(0.28,0.32]	chr21	751932	67	INTRON	INTRON	ENSG00000278932	ENSG00000278932.5	ENST00000622961.3:ENST00000686553.1:ENST00000691955.1:ENST00000625153.3:ENST00000692626.1:ENST00000685951.1:ENST00000686510.1:ENST00000692884.1	lncRNA	lncRNA	lncRNA	lncRNA	4	55	2	2.00989	2.0170950000000003	2.0243	0.0427801	0.0364967	0.153759	0.148082
chr15	82606425	82606525	6248090	0	-	0.4	(0.378,0.408]	chr15	596252	226	INTRON	INTRON	CPEB1	ENSG00000214575.10	ENST00000684509.1:ENST00000614918.4:ENST00000611031.4:ENST00000617958.4:ENST00000615198.4:ENST00000620182.4:ENST00000617522.4:ENST00000569257.5:ENST00000567678.1	protein_coding	protein_coding	protein_coding	protein_coding	5	58	2	1.89621	2.01709	2.13797	0.0488044	0.0124882	0.173377	0.0923444
chr16	31121862	31121955	6340445	0	+	0.483871	(0.476,0.515]	chr16	608276	9	INTRON	INTRON	KAT8	ENSG00000103510.20	ENST00000543774.6:ENST00000219797.9:ENST00000448516.6	protein_coding	protein_coding	protein_coding	protein_coding	14	130	2	1.60181	2.01702	2.43223	0.0108406	0.00145905	0.0873034	0.0349875
chr12	54234313	54234413	5330431	0	-	0.31	(0.28,0.32]	chr12	508602	35	UTR3	UTR3:EXON_MRNA	CBX5	ENSG00000094916.16	ENST00000209875.9	protein_coding	protein_coding	protein_coding	protein_coding	19	214	2	1.52291	2.016995	2.51108	0.00997624	0.00121869	0.0879541	0.0319984
chr11	47168892	47168989	4948824	0	-	0.453608	(0.44,0.476]	chr11	463889	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ARFGAP2:ENSG00000270060	ENSG00000149182.15:ENSG00000270060.1	ENST00000426335.6:ENST00000627920.2:ENST00000524782.6:ENST00000395449.7:ENST00000533243.5:ENST00000527776.5:ENST00000526342.5:ENST00000527927.5:ENST00000532478.5:ENST00000532438.5:ENST00000529455.5:ENST00000524412.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:nonsense_mediated_decay:lncRNA:processed_transcript	6	62	2	1.81283	2.01693	2.22103	0.0343005	0.00776319	0.135641	0.0787356
chr18	9947786	9947882	6873689	0	+	0.427083	(0.408,0.44]	chr18	680899	3	EXON_MRNA	EXON_MRNA:INTRON	VAPA	ENSG00000101558.14	ENST00000400000.7:ENST00000340541.4:ENST00000584796.5:ENST00000583879.5:ENST00000583475.1:ENST00000577539.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	9	78	2	1.20916	2.016885	2.82461	0.0631681	0.00241819	0.197212	0.0442901
chr12	50411104	50411204	5136435	0	+	0.34	(0.32,0.35]	chr12	484352	79	INTRON	INTRON	LARP4	ENSG00000161813.23	ENST00000550522.5:ENST00000293618.12:ENST00000429001.7:ENST00000398473.7:ENST00000548174.5:ENST00000548697.5:ENST00000548993.5:ENST00000522085.5:ENST00000518444.5:ENST00000551886.5:ENST00000523389.5:ENST00000518561.5:ENST00000347328.9:ENST00000550260.1:ENST00000517559.5:ENST00000552445.1	protein_coding	protein_coding	protein_coding	protein_coding	8	93	2	1.75437	2.01688	2.27939	0.017109	0.00844518	0.110916	0.0776969
chr1	51458733	51458833	453741	0	-	0.27	[0,0.28]	chr1	54397	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	EPS15	ENSG00000085832.17	ENST00000371733.8:ENST00000371730.6:ENST00000371727.5:ENST00000464478.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	10	148	2	1.70763	2.016865	2.3261	0.0175613	0.00538874	0.11319	0.0643592
chr1	204517407	204517507	297425	0	+	0.51	(0.476,0.515]	chr1	34260	5	INTRON	INTRON	MDM4	ENSG00000198625.14	ENST00000367183.7:ENST00000391947.6:ENST00000454264.6:ENST00000612738.4:ENST00000614459.4:ENST00000616250.4:ENST00000470797.5:ENST00000367182.8:ENST00000463049.5:ENST00000470908.5:ENST00000471783.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	63	2	1.86014	2.0168049999999997	2.17347	0.0277606	0.010447	0.137011	0.0855102
chr3	10150549	10150646	1363205	0	+	0.371134	(0.35,0.378]	chr3	143688	7	UTR3	UTR3:EXON_MRNA	VHL	ENSG00000134086.9	ENST00000696153.1:ENST00000256474.3:ENST00000696142.1:ENST00000345392.2:ENST00000696143.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	25	267	2	2.00025	2.0167	2.03315	0.00186985	5.93843e-4	0.0390476	0.0221865
chr16	21894922	21895022	6462214	0	-	0.44	(0.408,0.44]	chr16	623537	25	INTRON	INTRON	SMG1P4	ENSG00000185710.9	ENST00000523028.5	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	7	72	2	1.4947	2.016655	2.53861	0.0566065	0.00202413	0.167352	0.0416117
chr1	35105564	35105662	68177	0	+	0.408163	(0.378,0.408]	chr1	8691	4	INTRON	INTRON	ZMYM1	ENSG00000197056.11	ENST00000650449.1:ENST00000611874.4:ENST00000417119.5:ENST00000359858.9:ENST00000488455.5:ENST00000373330.1:ENST00000373329.5:ENST00000475654.5:ENST00000463393.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	33	2	1.89621	2.01662	2.13703	0.0797592	0.0488044	0.19979	0.173377
chr1	61177824	61177924	128350	0	+	0.38	(0.378,0.408]	chr1	14778	449	INTRON	INTRON	NFIA	ENSG00000162599.17	ENST00000371191.5:ENST00000664495.1:ENST00000476646.5:ENST00000407417.7:ENST00000479364.1:ENST00000371189.8:ENST00000670151.1:ENST00000664149.1:ENST00000662015.1:ENST00000403491.8:ENST00000371187.7:ENST00000485903.6:ENST00000371185.6:ENST00000371184.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	33	2	1.89621	2.01662	2.13703	0.0797592	0.0488044	0.19979	0.173377
chr21	39222324	39222423	7464600	0	-	0.383838	(0.378,0.408]	chr21	760426	33	INTRON	INTRON	BRWD1	ENSG00000185658.14	ENST00000333229.6:ENST00000342449.8:ENST00000446924.5:ENST00000380800.7:ENST00000424441.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	33	2	1.89621	2.01662	2.13703	0.0797592	0.0488044	0.19979	0.173377
chr7	116875185	116875285	3385489	0	+	0.38	(0.378,0.408]	chr7	317035	10	INTRON	INTRON	CAPZA2	ENSG00000198898.15	ENST00000464223.5:ENST00000484325.1:ENST00000414148.6:ENST00000361183.8:ENST00000449080.5:ENST00000639546.1:ENST00000426421.5:ENST00000490693.5:ENST00000417431.5:ENST00000461878.5:ENST00000464669.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	33	2	1.89621	2.01662	2.13703	0.0797592	0.0488044	0.19979	0.173377
chr2	28756371	28756471	724695	0	+	0.38	(0.378,0.408]	chr2	83720	38	INTRON	INTRON	PPP1CB	ENSG00000213639.10	ENST00000455580.5:ENST00000420282.5:ENST00000441461.5:ENST00000427786.1:ENST00000358506.6:ENST00000296122.10:ENST00000395366.3:ENST00000464273.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	51	2	1.36527	2.01656	2.66785	0.0587392	0.0224639	0.189982	0.11692
chr15	44432594	44432694	6014401	0	+	0.53	(0.515,0.57]	chr15	572914	41	INTRON	INTRON	CTDSPL2	ENSG00000137770.14	ENST00000558791.5:ENST00000260327.9:ENST00000560834.1:ENST00000558966.5:ENST00000559793.5:ENST00000558968.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	44	2	1.88259	2.01655	2.15051	0.0251849	0.0238113	0.133519	0.118889
chr1	109348331	109348431	520514	0	-	0.29	(0.28,0.32]	chr1	61161	4	INTRON	INTRON	SORT1	ENSG00000134243.12	ENST00000538502.5:ENST00000256637.8	protein_coding	protein_coding	protein_coding	protein_coding	5	56	2	1.51776	2.01632	2.51488	0.0528371	0.0380957	0.178899	0.141678
chr12	74268509	74268608	5368134	0	-	0.464646	(0.44,0.476]	chr12	512126	176	INTRON	INTRON	LINC02882:ENSG00000257183	ENSG00000251138.7:ENSG00000257183.1	ENST00000663261.1:ENST00000665907.1:ENST00000669556.1:ENST00000653134.1:ENST00000549905.5:ENST00000662107.1:ENST00000658833.1:ENST00000515416.7:ENST00000551726.2:ENST00000670573.1:ENST00000656876.1:ENST00000668228.1:ENST00000668997.1:ENST00000665895.1:ENST00000670471.1:ENST00000658677.1:ENST00000668665.1:ENST00000552046.1	lncRNA	lncRNA	lncRNA	lncRNA	6	60	2	1.43625	2.016285	2.59632	0.063142	0.00579248	0.197183	0.0662959
chr2	54982314	54982414	1120720	0	-	0.29	(0.28,0.32]	chr2	120131	4	SS5_PROX	SS5_PROX:INTRON	RTN4	ENSG00000115310.19	ENST00000394609.6:ENST00000404909.5:ENST00000394611.6:ENST00000317610.11:ENST00000357732.8:ENST00000337526.11:ENST00000357376.7:ENST00000405240.5:ENST00000486085.5:ENST00000438462.1	protein_coding	protein_coding	protein_coding	protein_coding	15	147	2	1.56042	2.016225	2.47203	0.0114089	0.00928868	0.0886611	0.0855292
chr16	21517228	21517328	6461529	0	-	0.57	(0.515,0.57]	chr16	623383	107	INTRON	INTRON	SMG1P3	ENSG00000180747.15	ENST00000522841.6:ENST00000437413.2:ENST00000435197.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	6	53	2	1.97035	2.016205	2.06206	0.0195832	0.0135396	0.109483	0.101363
chr7	152825322	152825422	3451184	0	+	0.54	(0.515,0.57]	chr7	322566	2	SS5_PROX	SS5_PROX:INTRON	ACTR3B	ENSG00000133627.18	ENST00000377776.7:ENST00000256001.13:ENST00000397282.2:ENST00000479402.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	53	2	1.97035	2.016205	2.06206	0.0195832	0.0135396	0.109483	0.101363
chr10	5779441	5779541	4544575	0	-	0.4	(0.378,0.408]	chr10	419772	51	INTRON	INTRON	GDI2	ENSG00000057608.17	ENST00000380191.9:ENST00000447751.5:ENST00000380181.7:ENST00000456041.5	protein_coding	protein_coding	protein_coding	protein_coding	10	103	2	1.62294	2.015985	2.40903	0.0222846	0.00165739	0.116433	0.0376447
chr4	51914471	51914569	1959292	0	+	0.387755	(0.378,0.408]	chr4	196379	10	UTR3	UTR3:EXON_MRNA	DCUN1D4	ENSG00000109184.15	ENST00000381441.7:ENST00000334635.10:ENST00000477560.5:ENST00000451288.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	72	2	1.67662	2.015945	2.35527	0.0243251	0.0121511	0.12011	0.0963966
chr12	124785624	124785721	5445784	0	-	0.412371	(0.408,0.44]	chr12	521219	30	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	SCARB1	ENSG00000073060.17	ENST00000339570.9:ENST00000261693.11:ENST00000679605.1:ENST00000681686.1:ENST00000680926.1:ENST00000680556.1:ENST00000680982.1:ENST00000680596.1:ENST00000681555.1:ENST00000681788.1:ENST00000415380.6:ENST00000681117.1:ENST00000681499.1:ENST00000545305.1:ENST00000538291.5:ENST00000546215.5:ENST00000535005.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	38	339	2	1.64168	2.015925	2.39017	0.00177396	1.89261e-4	0.0391568	0.012565
chr3	44495997	44496096	1676742	0	-	0.343434	(0.32,0.35]	chr3	171153	5	INTRON	INTRON	ZNF852	ENSG00000178917.17	ENST00000650400.1	protein_coding	protein_coding	protein_coding	protein_coding	8	98	2	1.88141	2.01588	2.15035	0.0161424	0.00745925	0.109464	0.0748233
chr19	11115212	11115307	7017089	0	+	0.452632	(0.44,0.476]	chr19	697473	11	INTRON	INTRON	LDLR	ENSG00000130164.14	ENST00000557933.5:ENST00000558518.6:ENST00000545707.5:ENST00000535915.5:ENST00000455727.6:ENST00000558013.5:ENST00000252444.9:ENST00000559340.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	15	142	2	1.47814	2.015835	2.55353	0.0154393	5.66455e-4	0.108757	0.0219934
chrX	118420225	118420325	7707860	0	+	0.46	(0.44,0.476]	chrX	788600	89	INTRON	INTRON	WDR44	ENSG00000131725.14	ENST00000371822.9:ENST00000254029.8:ENST00000371825.7:ENST00000371848.3	protein_coding	protein_coding	protein_coding	protein_coding	4	43	2	2.00609	2.015835	2.02558	0.0363567	0.0360127	0.152355	0.138959
chr12	118030592	118030681	5234256	0	+	0.393258	(0.378,0.408]	chr12	496556	4	INTRON	INTRON	RFC5	ENSG00000111445.14	ENST00000454402.7:ENST00000392542.6:ENST00000543153.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	70	2	1.51701	2.015825	2.51464	0.0404516	0.00684341	0.144865	0.0748032
chr17	56896648	56896746	6798966	0	-	0.336735	(0.32,0.35]	chr17	671253	3	INTRON	INTRON	TRIM25	ENSG00000121060.19	ENST00000648772.1:ENST00000682766.1:ENST00000316881.9:ENST00000537230.3:ENST00000572021.6:ENST00000570473.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	70	2	1.98909	2.01573	2.04237	0.0375542	0.0108865	0.140222	0.0923273
chr2	235580625	235580725	1042203	0	+	0.35	(0.32,0.35]	chr2	111222	557	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1:ENST00000402604.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	70	2	1.98909	2.01573	2.04237	0.0375542	0.0108865	0.140222	0.0923273
chr1	52871640	52871739	105202	0	+	0.323232	(0.32,0.35]	chr1	13760	35	INTRON	INTRON	ZYG11A	ENSG00000203995.10	ENST00000371532.5:ENST00000612017.4:ENST00000371528.2	protein_coding	protein_coding	protein_coding	protein_coding	6	69	2	1.76503	2.015715	2.2664	0.0240772	0.0199969	0.129859	0.109608
chr1	180885939	180886038	272150	0	+	0.30303	(0.28,0.32]	chr1	31696	20	UTR3	UTR3:EXON_MRNA	XPR1	ENSG00000143324.14	ENST00000367590.9:ENST00000367589.3	protein_coding	protein_coding	protein_coding	protein_coding	7	91	2	1.99988	2.0157	2.03152	0.0228757	0.00983556	0.118056	0.0877296
chr14	30977192	30977292	5857381	0	-	0.34	(0.32,0.35]	chr14	556508	128	INTRON	INTRON	STRN3	ENSG00000196792.12	ENST00000355683.9:ENST00000357479.10:ENST00000555358.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	71	2	1.94202	2.01566	2.0893	0.0486128	0.00738971	0.153946	0.0769106
chr19	5105435	5105535	7004795	0	+	0.58	(0.57,1]	chr19	694855	226	INTRON	INTRON	KDM4B	ENSG00000127663.15	ENST00000159111.9:ENST00000611640.4:ENST00000381759.8:ENST00000536461.5:ENST00000589104.5:ENST00000588961.1:ENST00000588361.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	9	48	2	1.58776	2.01566	2.44356	0.0295652	0.00109465	0.142135	0.0304174
chr1	65281898	65281998	135812	0	+	0.45	(0.44,0.476]	chr1	15346	166	INTRON	INTRON	DNAJC6	ENSG00000116675.16	ENST00000463018.5:ENST00000494710.6:ENST00000263441.11:ENST00000395325.7:ENST00000483402.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	16	157	2	1.73903	2.0156549999999998	2.29228	0.00725325	6.09793e-4	0.072984	0.0223951
chr9	123116398	123116498	4338928	0	-	0.41	(0.408,0.44]	chr9	398830	3	SS3_PROX	SS3_PROX:INTRON	STRBP	ENSG00000165209.19	ENST00000530364.1:ENST00000478973.6:ENST00000471564.6	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	8	80	2	1.35739	2.0156549999999998	2.67392	0.063317	0.00106946	0.177047	0.0300133
chr22	32479675	32479775	7507768	0	+	0.41	(0.408,0.44]	chr22	766227	4	SS5_PROX	SS5_PROX:INTRON	FBXO7	ENSG00000100225.18	ENST00000420700.5:ENST00000425028.5:ENST00000266087.12:ENST00000492535.1:ENST00000452138.3:ENST00000397426.5:ENST00000444207.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	66	2	1.66945	2.01565	2.36185	0.0218479	0.0133164	0.123836	0.094512
chr6	140151189	140151289	2967967	0	+	0.24	[0,0.28]	chr6	279015	21	INTRON	INTRON	ENSG00000288714	ENSG00000288714.1	ENST00000683950.1	lncRNA	lncRNA	lncRNA	lncRNA	5	76	2	1.75741	2.015625	2.27384	0.0424454	0.0233847	0.161763	0.11839
chr7	119764936	119765035	3628988	0	-	0.434343	(0.408,0.44]	chr7	337323	124	INTRON	INTRON	LINC02476	ENSG00000225546.6	ENST00000660268.1:ENST00000431071.5:ENST00000426413.2	lncRNA	lncRNA	lncRNA	lncRNA	17	167	2	1.95595	2.01561	2.07527	0.00448131	8.32507e-4	0.0593175	0.0263691
chr1	21755850	21755947	396592	0	-	0.505155	(0.476,0.515]	chr1	47332	24	INTRON	INTRON	USP48	ENSG00000090686.16	ENST00000400301.5:ENST00000308271.14:ENST00000529637.5:ENST00000421625.6:ENST00000527823.5:ENST00000532737.1	protein_coding	protein_coding	protein_coding	protein_coding	9	94	2	1.28655	2.01546	2.74437	0.075974	2.8757e-4	0.194842	0.0150609
chr5	73043105	73043204	2389044	0	+	0.50505	(0.476,0.515]	chr5	230574	14	INTRON	INTRON	FCHO2	ENSG00000157107.14	ENST00000430046.7:ENST00000512348.5	protein_coding	protein_coding	protein_coding	protein_coding	10	98	2	1.94021	2.015435	2.09066	0.00772252	0.00523626	0.0756858	0.0656295
chr19	2135149	2135247	7115382	0	-	0.336735	(0.32,0.35]	chr19	715251	13	INTRON	INTRON	AP3D1	ENSG00000065000.19	ENST00000643116.3:ENST00000345016.9:ENST00000643010.1:ENST00000591284.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	50	2	1.83416	2.01542	2.19668	0.0631198	0.021398	0.176946	0.123719
chr6	140214465	140214565	2968600	0	+	0.33	(0.32,0.35]	chr6	279015	654	INTRON	INTRON	ENSG00000288714	ENSG00000288714.1	ENST00000683950.1	lncRNA	lncRNA	lncRNA	lncRNA	4	50	2	1.83416	2.01542	2.19668	0.0631198	0.021398	0.176946	0.123719
chr7	26199855	26199951	3506232	0	-	0.645833	(0.57,1]	chr7	327192	8	UTR5	UTR5:EXON_MRNA:INTRON	HNRNPA2B1	ENSG00000122566.22	ENST00000679318.1:ENST00000677339.1:ENST00000678501.1:ENST00000676903.1:ENST00000608362.2:ENST00000677631.1:ENST00000676749.1:ENST00000677574.1:ENST00000679123.1:ENST00000677906.1:ENST00000476233.2:ENST00000677669.1:ENST00000677321.1:ENST00000678277.1:ENST00000677571.1:ENST00000679124.1:ENST00000676932.1:ENST00000678973.1:ENST00000678183.1:ENST00000679021.1:ENST00000678035.1:ENST00000677075.1:ENST00000678075.1:ENST00000678631.1:ENST00000678998.1:ENST00000490912.6:ENST00000354667.8:ENST00000618183.5:ENST00000677839.1:ENST00000677037.1:ENST00000678449.1:ENST00000679001.1:ENST00000678962.1:ENST00000676524.1:ENST00000678935.1:ENST00000678675.1:ENST00000676746.1:ENST00000356674.8:ENST00000678431.1:ENST00000678697.1:ENST00000678779.1:ENST00000676497.1:ENST00000677396.1:ENST00000360787.8:ENST00000679243.1:ENST00000677656.1:ENST00000463181.5:ENST00000678884.1:ENST00000495810.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	45	223	2	1.98828	2.015385	2.04249	1.38725e-4	5.83057e-5	0.0101494	0.00668534
chr16	23912942	23913042	6324530	0	+	0.48	(0.476,0.515]	chr16	605701	192	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000498739.1	protein_coding	protein_coding	protein_coding	protein_coding	8	81	2	1.75142	2.01531	2.2792	0.0259024	0.00299196	0.121522	0.0503888
chr22	21852627	21852727	7561236	0	-	0.47	(0.44,0.476]	chr22	773388	444	INTRON	INTRON	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	11	106	2	1.82337	2.015255	2.20714	0.0063815	0.00493236	0.0725747	0.061186
chr1	23695339	23695431	44556	0	+	0.402174	(0.378,0.408]	chr1	5373	7	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	RPL11	ENSG00000142676.14	ENST00000374550.8:ENST00000643754.2:ENST00000443624.6:ENST00000467075.2:ENST00000458455.2:ENST00000482370.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	45	2	1.97143	2.0152	2.05897	0.0398704	0.0339294	0.161534	0.134508
chr21	46442858	46442953	7422466	0	+	0.389474	(0.378,0.408]	chr21	756954	4	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	PCNT	ENSG00000160299.18	ENST00000695558.1:ENST00000359568.10:ENST00000480896.5:ENST00000695527.1:ENST00000695528.1:ENST00000695529.1:ENST00000695530.1:ENST00000418394.2:ENST00000695532.1:ENST00000695531.1:ENST00000695533.1:ENST00000695534.1:ENST00000695535.1:ENST00000695536.1:ENST00000695537.1:ENST00000465356.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	45	2	1.97143	2.0152	2.05897	0.0398704	0.0339294	0.161534	0.134508
chr3	138833694	138833794	1831490	0	-	0.39	(0.378,0.408]	chr3	184062	368	INTRON	INTRON	PIK3CB	ENSG00000051382.9	ENST00000674063.1:ENST00000477593.5:ENST00000462898.5:ENST00000483968.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	45	2	1.97143	2.0152	2.05897	0.0398704	0.0339294	0.161534	0.134508
chr1	47230846	47230946	445435	0	-	0.64	(0.57,1]	chr1	53968	4	SS5_PROX	SS5_PROX:INTRON	TAL1	ENSG00000162367.12	ENST00000371884.6:ENST00000691006.1:ENST00000481091.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	33	2	1.79063	2.015175	2.23972	0.0356001	0.00670296	0.15159	0.0707084
chr22	18573178	18573277	7551084	0	-	0.626263	(0.57,1]	chr22	771829	203	INTRON	INTRON	PI4KAP1	ENSG00000274602.5	ENST00000612500.4:ENST00000611748.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	6	33	2	1.79063	2.015175	2.23972	0.0356001	0.00670296	0.15159	0.0707084
chr2	68175184	68175280	801377	0	+	0.322917	(0.32,0.35]	chr2	89583	5	UTR3	UTR3:EXON_MRNA	PNO1	ENSG00000115946.8	ENST00000263657.7	protein_coding	protein_coding	protein_coding	protein_coding	8	87	2	1.44248	2.015005	2.58753	0.0431876	0.00560122	0.148082	0.0678837
chr9	33994182	33994281	4245293	0	-	0.474747	(0.44,0.476]	chr9	390463	47	INTRON	INTRON	UBAP2	ENSG00000137073.24	ENST00000379238.7:ENST00000683659.1:ENST00000682239.1:ENST00000683140.1:ENST00000682209.1:ENST00000681980.1:ENST00000360802.6:ENST00000683252.1:ENST00000684158.1:ENST00000682914.1:ENST00000683717.1:ENST00000379239.9:ENST00000683084.1:ENST00000684754.1:ENST00000629575.2:ENST00000684298.1:ENST00000412543.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	44	2	1.49356	2.01498	2.5364	0.0537505	0.0309324	0.180803	0.13151
chr7	111472842	111472942	3623215	0	-	0.52	(0.515,0.57]	chr7	337108	801	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000452895.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding	7	62	2	1.62814	2.01496	2.40178	0.035203	0.00382306	0.150193	0.0542786
chr20	47252129	47252228	7348454	0	-	0.515152	(0.476,0.515]	chr20	749282	23	INTRON	INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000467200.6:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000468376.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	62	2	1.89682	2.0149299999999997	2.13304	0.024866	0.0158424	0.132101	0.101453
chr10	70168521	70168620	4640875	0	-	0.40404	(0.378,0.408]	chr10	426918	6	INTRON	INTRON	SAR1A	ENSG00000079332.15	ENST00000373242.6:ENST00000373241.9:ENST00000373239.2	protein_coding	protein_coding	protein_coding	protein_coding	9	95	2	1.87402	2.0148800000000002	2.15574	0.0121355	0.00519611	0.0910127	0.0654762
chr5	179622942	179623036	2779777	0	-	0.797872	(0.57,1]	chr5	262335	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	HNRNPH1	ENSG00000169045.17	ENST00000329433.11:ENST00000393432.9:ENST00000356731.9:ENST00000442819.6:ENST00000514332.5:ENST00000510411.5:ENST00000510678.5:ENST00000514731.5:ENST00000503105.5:ENST00000504779.6:ENST00000508103.5:ENST00000506721.5:ENST00000523137.5:ENST00000505811.5:ENST00000510431.5:ENST00000519056.5:ENST00000504348.5:ENST00000513225.5:ENST00000524180.5:ENST00000513972.5:ENST00000519707.5:ENST00000519455.5:ENST00000515158.5:ENST00000521116.5:ENST00000505087.1:ENST00000515714.5:ENST00000512273.5:ENST00000503664.1:ENST00000630639.1:ENST00000515446.1:ENST00000513230.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	19	94	2	1.41712	2.0148	2.61248	0.013541	4.65953e-5	0.101363	0.00592418
chr10	21573523	21573623	4404809	0	+	0.26	[0,0.28]	chr10	406453	11	INTRON	INTRON	MLLT10	ENSG00000078403.17	ENST00000651097.1:ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000650772.1:ENST00000651298.1:ENST00000495130.5:ENST00000377059.7:ENST00000476557.5:ENST00000462999.5:ENST00000430455.2:ENST00000479634.1:ENST00000480415.6:ENST00000652258.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	106	2	1.76483	2.0146800000000002	2.26453	0.0483	0.00453975	0.153327	0.0618698
chr3	193620921	193621020	1592141	0	+	0.393939	(0.378,0.408]	chr3	164758	16	INTRON	INTRON	OPA1	ENSG00000198836.11	ENST00000361828.7:ENST00000361715.6:ENST00000361150.6:ENST00000361908.8:ENST00000361510.8:ENST00000642445.1:ENST00000646277.1:ENST00000644595.1:ENST00000643737.1:ENST00000644841.1:ENST00000392436.7:ENST00000646085.1:ENST00000643329.1:ENST00000646793.1:ENST00000392437.6:ENST00000645553.1:ENST00000642593.1:ENST00000644959.1:ENST00000642289.1:ENST00000646699.1:ENST00000644629.1:ENST00000434811.2:ENST00000497189.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	46	2	1.81685	2.014615	2.21238	0.0597868	0.0218124	0.189982	0.11491
chr16	56943981	56944079	6361274	0	+	0.428571	(0.408,0.44]	chr16	610641	7	UTR3	UTR3:EXON_MRNA	HERPUD1	ENSG00000051108.15	ENST00000439977.7	protein_coding	protein_coding	protein_coding	protein_coding	13	84	2	1.24794	2.01458	2.78122	0.03068	0.015812	0.143385	0.101453
chr16	9099289	9099389	6285448	0	+	0.49	(0.476,0.515]	chr16	601924	59	INTRON	INTRON	C16orf72	ENSG00000182831.12	ENST00000327827.12:ENST00000574285.2	protein_coding	protein_coding	protein_coding	protein_coding	6	66	2	1.61586	2.0145299999999997	2.4132	0.0567093	0.00417094	0.185107	0.0570595
chr5	105307362	105307462	2695500	0	-	0.39	(0.378,0.408]	chr5	254248	611	INTRON	INTRON	ENSG00000251574	ENSG00000251574.8	ENST00000503650.1	lncRNA	lncRNA	lncRNA	lncRNA	5	46	2	1.5653	2.014515	2.46373	0.043739	0.0382831	0.162255	0.141795
chr16	23900549	23900649	6324406	0	+	0.34	(0.32,0.35]	chr16	605701	68	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000498739.1	protein_coding	protein_coding	protein_coding	protein_coding	12	134	2	1.23789	2.01437	2.79085	0.058889	2.78537e-4	0.167915	0.0148769
chr21	44869497	44869596	7469086	0	-	0.585859	(0.57,1]	chr21	761251	35	INTRON	INTRON	PTTG1IP	ENSG00000183255.12	ENST00000397887.7:ENST00000445724.3:ENST00000330938.8:ENST00000494690.5:ENST00000480234.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	42	2	1.2666	2.0143500000000003	2.7621000000000002	0.0788045	5.29607e-4	0.198736	0.0207276
chr16	89473161	89473260	6543428	0	-	0.444444	(0.44,0.476]	chr16	634281	415	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	26	235	2	1.66588	2.014345	2.36281	0.00266152	4.44444e-4	0.0476179	0.0194771
chr17	57272290	57272388	6632905	0	+	0.540816	(0.515,0.57]	chr17	648001	39	INTRON	INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000581776.5:ENST00000581523.5:ENST00000674961.1:ENST00000582453.5:ENST00000675656.1:ENST00000322684.7:ENST00000579590.5:ENST00000579531.5:ENST00000676073.1:ENST00000675822.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	68	2	1.33814	2.01431	2.69048	0.063703	8.78655e-4	0.177689	0.0269932
chr8	43062717	43062815	3745912	0	+	0.346939	(0.32,0.35]	chr8	348521	32	INTRON	INTRON	FNTA	ENSG00000168522.13	ENST00000533559.5:ENST00000526755.5:ENST00000302279.8:ENST00000527153.5:ENST00000533383.5:ENST00000533998.5:ENST00000524546.5:ENST00000531266.5:ENST00000533368.1:ENST00000525699.5:ENST00000529687.5:ENST00000533336.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	50	2	1.88909	2.01427	2.13945	0.0553737	0.0254517	0.165463	0.133676
chr2	197420008	197420100	1306871	0	-	0.380435	(0.378,0.408]	chr2	136731	5	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SF3B1	ENSG00000115524.17	ENST00000652026.1:ENST00000652738.1:ENST00000335508.11:ENST00000470268.2:ENST00000409915.8:ENST00000414963.2:ENST00000487698.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	14	121	2	1.4644	2.014265	2.56413	0.0145407	0.0024299	0.10565	0.0444645
chr16	21515329	21515429	6461510	0	-	0.63	(0.57,1]	chr16	623383	88	INTRON	INTRON	SMG1P3	ENSG00000180747.15	ENST00000522841.6:ENST00000437413.2:ENST00000435197.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	11	51	2	1.47472	2.014255	2.55379	0.0206205	0.0015786	0.122348	0.0362091
chr7	139107724	139107824	3656401	0	-	0.52	(0.515,0.57]	chr7	339450	176	INTRON	INTRON	ZC3HAV1	ENSG00000105939.14	ENST00000242351.10:ENST00000464606.5:ENST00000680309.1:ENST00000471652.1	protein_coding	protein_coding	protein_coding	protein_coding	9	77	2	1.64356	2.0142499999999997	2.38494	0.024299	0.00164178	0.12011	0.0373835
chr4	126641582	126641682	2237125	0	-	0.48	(0.476,0.515]	chr4	219023	1761	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	9	90	2	1.87849	2.01419	2.14989	0.00992862	0.00611105	0.0877296	0.0676501
chr7	123737218	123737318	3632543	0	-	0.46	(0.44,0.476]	chr7	337581	276	INTRON	INTRON	WASL	ENSG00000106299.8	ENST00000223023.5	protein_coding	protein_coding	protein_coding	protein_coding	8	74	2	1.8376	2.01419	2.19078	0.0226089	0.00813403	0.117489	0.0810802
chr4	776656	776756	2093365	0	-	0.3	(0.28,0.32]	chr4	206823	87	INTRON	INTRON	ENSG00000249592	ENSG00000249592.7	ENST00000660016.1:ENST00000665579.1:ENST00000503571.5:ENST00000652800.1:ENST00000507446.1	lncRNA	lncRNA	lncRNA	lncRNA	10	120	2	1.35776	2.014065	2.67037	0.0497829	0.00141946	0.156383	0.034662
chr4	39724941	39725041	1953260	0	+	0.29	(0.28,0.32]	chr4	195630	262	INTRON	INTRON	UBE2K	ENSG00000078140.14	ENST00000510934.5:ENST00000261427.10:ENST00000438068.6:ENST00000513231.5:ENST00000503368.5:ENST00000445950.2:ENST00000510719.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	17	188	2	1.65377	2.01405	2.37433	0.00613834	0.00356769	0.0709731	0.0532113
chr2	53928803	53928900	1120143	0	-	0.484536	(0.476,0.515]	chr2	120046	1	INTRON	INTRON	PSME4	ENSG00000068878.15	ENST00000404125.6:ENST00000389993.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	52	2	1.86492	2.01399	2.16306	0.0550347	0.00973468	0.165463	0.0877284
chr17	51210916	51211014	6797373	0	-	0.530612	(0.515,0.57]	chr17	671094	11	INTRON	INTRON	MBTD1	ENSG00000011258.16	ENST00000586178.6:ENST00000415868.5:ENST00000405860.7:ENST00000591270.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	34	2	1.56681	2.013925	2.46104	0.064862	0.032841	0.179394	0.145164
chr1	219180025	219180125	318439	0	+	0.58	(0.57,1]	chr1	36451	2	INTRON	INTRON	LYPLAL1	ENSG00000143353.12	ENST00000460522.5:ENST00000366927.3:ENST00000496776.5:ENST00000366928.10:ENST00000477938.5:ENST00000463964.5:ENST00000483635.5:ENST00000474379.5:ENST00000469590.5:ENST00000478794.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	27	2	1.79063	2.01387	2.23711	0.0356001	0.0172108	0.15159	0.104099
chr16	81473688	81473788	6405286	0	+	0.62	(0.57,1]	chr16	615026	278	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8	protein_coding	protein_coding	protein_coding	protein_coding	5	27	2	1.79063	2.01387	2.23711	0.0356001	0.0172108	0.15159	0.104099
chr18	2612258	2612358	6864812	0	+	0.34	(0.32,0.35]	chr18	679924	10	INTRON	INTRON	NDC80	ENSG00000080986.13	ENST00000261597.9:ENST00000574096.1	protein_coding	protein_coding	protein_coding	protein_coding	6	73	2	1.96288	2.01383	2.06478	0.0239991	0.0147778	0.119664	0.106702
chr22	20088783	20088879	7478317	0	+	0.458333	(0.44,0.476]	chr22	762710	11	INTRON	INTRON	DGCR8	ENSG00000128191.16	ENST00000383024.6:ENST00000351989.8:ENST00000495826.5:ENST00000407755.1:ENST00000498171.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	22	215	2	1.81892	2.01378	2.20864	0.00318773	3.86254e-4	0.0505265	0.0177614
chr10	60787461	60787559	4435862	0	+	0.316327	(0.28,0.32]	chr10	409185	5	INTRON	INTRON	CDK1	ENSG00000170312.17	ENST00000519078.6:ENST00000316629.8:ENST00000395284.8:ENST00000448257.6:ENST00000373809.2	protein_coding	protein_coding	protein_coding	protein_coding	19	239	2	1.92258	2.013745	2.10491	0.00593653	8.79416e-4	0.0674604	0.027009
chr5	133102673	133102772	2488528	0	+	0.282828	(0.28,0.32]	chr5	237564	4	INTRON	INTRON	HSPA4	ENSG00000170606.16	ENST00000304858.7:ENST00000514825.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	40	2	1.83771	2.01373	2.18975	0.0776042	0.0591725	0.196285	0.189982
chr9	120537688	120537783	4333465	0	-	0.284211	(0.28,0.32]	chr9	398137	8	INTRON	INTRON	CDK5RAP2	ENSG00000136861.19	ENST00000349780.9:ENST00000360190.8:ENST00000687279.1:ENST00000687633.1:ENST00000684780.1:ENST00000687311.1:ENST00000690814.1:ENST00000686842.1:ENST00000693714.1:ENST00000693386.1:ENST00000692746.1:ENST00000686376.1:ENST00000692155.1:ENST00000690646.1:ENST00000693433.1:ENST00000688923.1:ENST00000473282.6:ENST00000480112.5:ENST00000685866.1:ENST00000689688.1:ENST00000416449.6:ENST00000691504.1:ENST00000360822.8:ENST00000693728.1:ENST00000690474.1:ENST00000693137.1:ENST00000693702.1:ENST00000481266.2:ENST00000472883.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	40	2	1.83771	2.01373	2.18975	0.0776042	0.0591725	0.196285	0.189982
chr20	3987981	3988081	7309132	0	-	0.4	(0.378,0.408]	chr20	744300	132	INTRON	INTRON	RNF24	ENSG00000101236.17	ENST00000336095.10:ENST00000358395.11:ENST00000545616.2	protein_coding	protein_coding	protein_coding	protein_coding	9	94	2	1.91906	2.0137099999999997	2.10836	0.0153989	0.00375851	0.100621	0.0562562
chr3	196048286	196048386	1897188	0	-	0.31	(0.28,0.32]	chr3	189884	207	INTRON	INTRON	TFRC	ENSG00000072274.13	ENST00000426789.5	protein_coding	protein_coding	protein_coding	protein_coding	12	150	2	1.38319	2.0137	2.64421	0.0336194	0.00116599	0.146709	0.0312127
chr5	65556431	65556529	2634227	0	-	0.336735	(0.32,0.35]	chr5	250195	11	INTRON	INTRON	CENPK	ENSG00000123219.13	ENST00000514814.5:ENST00000396679.6:ENST00000508421.5:ENST00000510693.5:ENST00000506282.6:ENST00000505960.5:ENST00000515497.5:ENST00000515873.5:ENST00000510768.5:ENST00000510354.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	15	166	2	1.42431	2.01363	2.60295	0.0259266	3.74174e-4	0.121619	0.0174527
chr10	74113585	74113683	4455682	0	+	0.408163	(0.378,0.408]	chr10	411503	11	INTRON	INTRON	VCL	ENSG00000035403.18	ENST00000623461.3:ENST00000372755.7:ENST00000624354.3:ENST00000211998.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	10	86	2	1.43345	2.0136249999999998	2.5938	0.0254532	0.00614976	0.133676	0.0676501
chr2	144512249	144512346	1241732	0	-	0.381443	(0.378,0.408]	chr2	131750	10	UTR3	UTR3:EXON_MRNA:INTRON	ZEB2	ENSG00000169554.23	ENST00000636471.1:ENST00000627532.3:ENST00000638128.1:ENST00000637304.1:ENST00000419938.5:ENST00000409487.7:ENST00000636732.2:ENST00000636026.2:ENST00000675069.1:ENST00000689298.1:ENST00000539609.7:ENST00000558170.6:ENST00000303660.8:ENST00000427902.5:ENST00000637267.2:ENST00000392861.6:ENST00000431672.4:ENST00000409211.5:ENST00000465308.5:ENST00000434448.5:ENST00000472146.5:ENST00000461784.3:ENST00000476394.5:ENST00000637591.2:ENST00000479735.1:ENST00000453352.5:ENST00000435831.5:ENST00000444559.5:ENST00000630572.2:ENST00000484313.3:ENST00000629955.1:ENST00000465070.5:ENST00000636445.1:ENST00000629520.2:ENST00000470879.5:ENST00000625161.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	20	207	2	1.98774	2.0135899999999998	2.03944	0.00165097	0.001399	0.0369207	0.0342469
chr1	11016254	11016354	24594	0	+	0.42	(0.408,0.44]	chr1	2577	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TARDBP	ENSG00000120948.19	ENST00000473118.5:ENST00000639083.1:ENST00000639599.1:ENST00000629725.2:ENST00000439080.6:ENST00000240185.8:ENST00000472476.5:ENST00000476201.5:ENST00000613864.4:ENST00000614757.4:ENST00000621715.4:ENST00000473869.5:ENST00000315091.7:ENST00000616545.4:ENST00000621790.4:ENST00000649624.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	53	2	1.87977	2.013545	2.14732	0.0282738	0.0237354	0.129075	0.125825
chrX	73821639	73821738	7837734	0	-	0.484848	(0.476,0.515]	chrX	799584	11	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	XIST	ENSG00000229807.13	ENST00000669898.1:ENST00000650627.1:ENST00000434839.3:ENST00000421322.3:ENST00000416330.2:ENST00000429829.6:ENST00000648829.1:ENST00000666954.1:ENST00000417942.5:ENST00000647913.2:ENST00000647696.1:ENST00000650366.1:ENST00000648607.1:ENST00000650548.1:ENST00000650186.1:ENST00000635841.2:ENST00000650637.1:ENST00000648970.1	lncRNA	lncRNA	lncRNA	lncRNA	13	110	2	1.20452	2.013515	2.82251	0.04391	6.78359e-4	0.162255	0.023827
chr1	21161767	21161867	393479	0	-	0.49	(0.476,0.515]	chr1	46836	488	INTRON	INTRON	EIF4G3	ENSG00000075151.24	ENST00000374935.7:ENST00000602326.6:ENST00000685872.1:ENST00000686579.1:ENST00000688741.1:ENST00000400422.6:ENST00000634879.2:ENST00000693470.1:ENST00000685814.1:ENST00000356916.7:ENST00000682284.1:ENST00000438975.5:ENST00000411888.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	65	2	1.57103	2.013505	2.45598	0.0307896	0.00945755	0.143385	0.0817766
chr7	100815901	100816000	3587699	0	-	0.474747	(0.44,0.476]	chr7	334693	15	INTRON	INTRON	EPHB4	ENSG00000196411.10	ENST00000358173.8:ENST00000616502.4:ENST00000360620.7:ENST00000487222.5:ENST00000477446.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	59	2	1.42812	2.0135	2.59888	0.0673866	0.00487719	0.183355	0.0640618
chr1	70231764	70231858	142704	0	+	0.276596	[0,0.28]	chr1	15995	7	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	SRSF11	ENSG00000116754.14	ENST00000370951.5:ENST00000687381.1:ENST00000370950.7:ENST00000475204.5:ENST00000370949.2:ENST00000395136.7:ENST00000473950.5:ENST00000486667.5:ENST00000481648.5:ENST00000484162.5:ENST00000463859.6:ENST00000690370.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	16	235	2	1.77588	2.013495	2.25111	0.012845	0.00106476	0.0926667	0.0300133
chr1	158612616	158612716	569839	0	-	0.38	(0.378,0.408]	chr1	68703	4	SS5_PROX	SS5_PROX:INTRON	SPTA1	ENSG00000163554.15	ENST00000643759.2	protein_coding	protein_coding	protein_coding	protein_coding	5	54	2	1.72045	2.0133650000000003	2.30628	0.0424671	0.0163339	0.161763	0.101571
chrX	119577266	119577366	7713450	0	+	0.38	(0.378,0.408]	chrX	789241	2	SS5_PROX	SS5_PROX:INTRON	UBE2A	ENSG00000077721.17	ENST00000696539.1:ENST00000696533.1:ENST00000696534.1:ENST00000346330.6:ENST00000625938.2:ENST00000631185.2:ENST00000630695.2:ENST00000371558.7:ENST00000629303.2:ENST00000628549.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	105	2	1.60639	2.013325	2.42026	0.0205731	0.00213386	0.122348	0.041773
chr7	112784064	112784158	3624341	0	-	0.351064	(0.35,0.378]	chr7	337164	4	CDS	CDS:EXON_MRNA:SS3_PROX:INTRON	TMEM168	ENSG00000146802.13	ENST00000312814.11:ENST00000454074.5:ENST00000447395.5:ENST00000449743.1:ENST00000441474.1	protein_coding	protein_coding	protein_coding	protein_coding	10	108	2	2.00273	2.013315	2.0239	0.0110441	0.00416915	0.0873897	0.0591344
chr9	4802802	4802901	4094964	0	+	0.444444	(0.44,0.476]	chr9	373155	92	INTRON	INTRON	RCL1	ENSG00000120158.12	ENST00000381750.9:ENST00000381732.3:ENST00000442869.5:ENST00000473230.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	82	2	1.21196	2.01329	2.81462	0.0542558	0.00247064	0.182243	0.0446195
chr16	47528689	47528789	6343979	0	+	0.44	(0.408,0.44]	chr16	608879	127	INTRON	INTRON	PHKB	ENSG00000102893.17	ENST00000566037.6:ENST00000566044.5:ENST00000299167.12:ENST00000696809.1:ENST00000323584.10:ENST00000565424.2:ENST00000567402.5:ENST00000570047.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	52	2	1.94273	2.013245	2.08376	0.0456237	0.0129886	0.149888	0.0991656
chr2	39102742	39102842	1102155	0	-	0.47	(0.44,0.476]	chr2	118304	44	INTRON	INTRON	SOS1	ENSG00000115904.15	ENST00000692089.1:ENST00000402219.8:ENST00000690876.1:ENST00000395038.6:ENST00000691229.1:ENST00000689668.1:ENST00000690679.1:ENST00000461545.2:ENST00000451331.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	71	2	1.76195	2.013235	2.26452	0.0252608	0.00654074	0.12011	0.0735539
chr7	152320525	152320625	3680134	0	-	0.42	(0.408,0.44]	chr7	341641	48	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000684262.1:ENST00000682301.1:ENST00000452749.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	83	2	1.74108	2.013225	2.28537	0.0424099	0.00158783	0.148082	0.0367961
chr2	70292960	70293056	1152606	0	-	0.239583	[0,0.28]	chr2	123148	4	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	SNRPG	ENSG00000143977.14	ENST00000272348.7:ENST00000429728.1:ENST00000482975.6:ENST00000438261.5:ENST00000454893.1:ENST00000413456.6:ENST00000480370.1:ENST00000488400.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	10	138	2	1.821	2.01318	2.20536	0.0138742	0.00904629	0.0954405	0.0853448
chr22	21785560	21785659	7560559	0	-	0.50505	(0.476,0.515]	chr22	773360	122	INTRON	INTRON	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	32	300	2	1.83681	2.013165	2.18952	8.77565e-4	4.46024e-4	0.026991	0.019519
chr19	1427744	1427843	6995304	0	+	0.575758	(0.57,1]	chr19	693206	15	EXON_MRNA	EXON_MRNA:INTRON	DAZAP1	ENSG00000071626.17	ENST00000336761.10:ENST00000233078.9:ENST00000592522.5:ENST00000586579.5:ENST00000587079.5:ENST00000592453.2:ENST00000589484.5:ENST00000585485.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	20	101	2	1.68382	2.0130850000000002	2.34235	0.00419054	1.23842e-4	0.0591344	0.010016
chr1	37498035	37498135	423890	0	-	0.44	(0.408,0.44]	chr1	51238	9	INTRON	INTRON	MEAF6	ENSG00000163875.16	ENST00000296214.10:ENST00000373075.6:ENST00000373074.5:ENST00000475828.5:ENST00000487788.5:ENST00000373073.8:ENST00000487792.5:ENST00000448519.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	52	2	1.69172	2.0130149999999998	2.33431	0.0486032	0.0129219	0.153946	0.0990564
chr12	115977132	115977232	5422511	0	-	0.42	(0.408,0.44]	chr12	518165	10	INTRON	INTRON	MED13L	ENSG00000123066.9	ENST00000281928.9:ENST00000648379.1:ENST00000650226.1:ENST00000649607.1:ENST00000648737.1:ENST00000649775.1:ENST00000648825.1:ENST00000648916.1:ENST00000548694.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	52	2	1.69172	2.0130149999999998	2.33431	0.0486032	0.0129219	0.153946	0.0990564
chr19	52643270	52643370	7206656	0	-	0.45	(0.44,0.476]	chr19	731394	50	INTRON	INTRON	ZNF83	ENSG00000167766.20	ENST00000600714.5:ENST00000601257.5:ENST00000594682.6:ENST00000687234.1:ENST00000598536.5:ENST00000595171.5:ENST00000596440.5:ENST00000602232.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	9	78	2	1.20235	2.01293	2.82351	0.068424	0.00191049	0.184298	0.0403772
chr1	204406713	204406813	621990	0	-	0.34	(0.32,0.35]	chr1	73940	4	SS3_PROX	SS3_PROX:INTRON	PPP1R15B	ENSG00000158615.10	ENST00000693720.1:ENST00000367188.5:ENST00000689921.1:ENST00000690849.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	61	2	1.77409	2.0129099999999998	2.25173	0.0414296	0.0180122	0.146067	0.114436
chr9	131206392	131206492	4216466	0	+	0.51	(0.476,0.515]	chr9	386673	43	INTRON	INTRON	NUP214	ENSG00000126883.19	ENST00000695497.1:ENST00000695498.1:ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000524578.6:ENST00000453861.6:ENST00000483497.6:ENST00000695500.1:ENST00000650694.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	23	224	2	1.90813	2.0128500000000003	2.11757	0.00199073	5.33972e-4	0.0405379	0.0208885
chr7	157193630	157193730	3454499	0	+	0.27	[0,0.28]	chr7	322959	9	INTRON	INTRON	UBE3C	ENSG00000009335.18	ENST00000348165.10	protein_coding	protein_coding	protein_coding	protein_coding	13	142	2	1.18679	2.01282	2.83885	0.050588	0.00399044	0.17547	0.0550443
chr1	32663934	32664033	65959	0	+	0.565657	(0.515,0.57]	chr1	8429	12	INTRON	INTRON	RBBP4	ENSG00000162521.19	ENST00000414241.7:ENST00000527118.5:ENST00000373493.10:ENST00000401893.7:ENST00000524393.5:ENST00000492348.6:ENST00000526193.5:ENST00000373485.5:ENST00000477563.6:ENST00000458695.6:ENST00000445722.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	13	107	2	1.57348	2.01269	2.4519	0.0149632	5.82494e-4	0.0994339	0.0219289
chr7	158765653	158765753	3689167	0	-	0.51	(0.476,0.515]	chr7	342381	4	INTRON	INTRON	ESYT2	ENSG00000117868.18	ENST00000251527.10:ENST00000275418.13:ENST00000652148.1	protein_coding	protein_coding	protein_coding	protein_coding	15	147	2	1.93153	2.0126749999999998	2.09382	0.00477798	0.0012877399999999999	0.0602209	0.0333764
chr17	64488342	64488442	6815687	0	-	0.32	(0.28,0.32]	chr17	673756	1	SS5_PROX	SS5_PROX:INTRON	POLG2	ENSG00000256525.8	ENST00000539111.7:ENST00000581355.1:ENST00000671755.1:ENST00000673460.1:ENST00000585104.2:ENST00000577506.5:ENST00000585141.5:ENST00000578687.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	52	2	1.64432	2.012665	2.38101	0.0606133	0.0456017	0.171142	0.164236
chr2	38565526	38565625	1099389	0	-	0.383838	(0.378,0.408]	chr2	117895	9	INTRON	INTRON	HNRNPLL	ENSG00000143889.16	ENST00000449105.8:ENST00000409636.5:ENST00000358367.8:ENST00000608859.5:ENST00000378915.7:ENST00000272249.7:ENST00000409328.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	14	145	2	1.85344	2.0126150000000003	2.17179	0.00577772	0.00178023	0.0662147	0.039274
chr16	70116808	70116907	6383456	0	+	0.424242	(0.408,0.44]	chr16	613452	15	INTRON	INTRON	PDPR	ENSG00000090857.14	ENST00000288050.9:ENST00000561920.5:ENST00000568530.5:ENST00000398122.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	40	2	1.53263	2.0126049999999998	2.49258	0.0733439	0.0314608	0.190051	0.144381
chr2	38343091	38343179	1099001	0	-	0.340909	(0.32,0.35]	chr2	117857	8	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	ATL2:ENSG00000288994	ENSG00000119787.14:ENSG00000288994.1	ENST00000378954.9:ENST00000406122.5:ENST00000405384.6:ENST00000402054.5:ENST00000419554.6:ENST00000651368.1:ENST00000452935.6:ENST00000449130.5:ENST00000443098.5:ENST00000456736.5:ENST00000474535.2:ENST00000472097.1:ENST00000451483.1:ENST00000688110.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA	10	121	2	1.49732	2.012515	2.52771	0.0455974	5.57285e-4	0.149888	0.021494
chr6	36454570	36454670	2854033	0	+	0.52	(0.515,0.57]	chr6	269712	15	INTRON	INTRON	KCTD20	ENSG00000112078.14	ENST00000536244.5:ENST00000373731.7:ENST00000483557.5:ENST00000474988.5:ENST00000498267.5:ENST00000481911.5:ENST00000449081.6:ENST00000265344.8:ENST00000460983.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	11	93	2	2.0031	2.012485	2.02187	0.0055814	0.00357298	0.0649993	0.0548435
chr2	241445086	241445184	1054931	0	+	0.459184	(0.44,0.476]	chr2	112380	27	UTR3	UTR3:EXON_MRNA:INTRON	FARP2	ENSG00000006607.14	ENST00000264042.8:ENST00000627550.2:ENST00000373287.8:ENST00000413432.2	protein_coding	protein_coding	protein_coding	protein_coding	5	53	2	1.94723	2.012415	2.0776	0.0292951	0.0227424	0.141862	0.117618
chr7	105355256	105355356	3603569	0	-	0.45	(0.44,0.476]	chr7	336161	483	INTRON	INTRON	SRPK2	ENSG00000135250.17	ENST00000393651.8:ENST00000482897.5:ENST00000460391.5:ENST00000462282.5:ENST00000465112.5:ENST00000482862.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	11	99	2	1.37921	2.01239	2.64557	0.0307245	0.00158432	0.143385	0.0363089
chr15	51479247	51479347	6174979	0	-	0.39	(0.378,0.408]	chr15	588639	5	INTRON	INTRON	DMXL2	ENSG00000104093.14	ENST00000251076.9:ENST00000543779.6:ENST00000560891.6:ENST00000449909.7	protein_coding	protein_coding	protein_coding	protein_coding	13	122	2	1.88667	2.01232	2.13797	0.0124882	0.00237476	0.0923444	0.0448692
chr11	14344080	14344179	4917523	0	-	0.363636	(0.35,0.378]	chr11	460809	21	INTRON	INTRON	RRAS2	ENSG00000133818.14	ENST00000256196.9:ENST00000537760.5:ENST00000529237.5:ENST00000534746.5:ENST00000526063.5:ENST00000532814.5:ENST00000532950.5:ENST00000526717.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	57	2	1.7942	2.012315	2.23043	0.0378648	0.0187487	0.141212	0.117523
chr6	136782219	136782319	3235539	0	-	0.37	(0.35,0.378]	chr6	300700	613	INTRON	INTRON	MAP3K5	ENSG00000197442.10	ENST00000359015.5	protein_coding	protein_coding	protein_coding	protein_coding	5	57	2	1.7942	2.012315	2.23043	0.0378648	0.0187487	0.141212	0.117523
chr1	29062382	29062482	60453	0	+	0.39	(0.378,0.408]	chr1	7726	15	INTRON	INTRON	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000647918.1:ENST00000646800.1:ENST00000644342.1:ENST00000646189.1:ENST00000482464.6:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000646260.1:ENST00000373798.5:ENST00000644600.1:ENST00000649674.1:ENST00000643173.1:ENST00000343067.9:ENST00000644780.1:ENST00000650265.1:ENST00000648181.1:ENST00000643604.1:ENST00000648891.1:ENST00000373797.2:ENST00000349460.9:ENST00000645184.1:ENST00000645111.1:ENST00000643302.1:ENST00000642643.1:ENST00000636666.1:ENST00000644848.1:ENST00000644470.1:ENST00000646871.1:ENST00000488277.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	84	2	1.8121	2.0122400000000003	2.21238	0.0218124	0.00683005	0.11491	0.0748032
chr2	241353034	241353133	1054009	0	+	0.40404	(0.378,0.408]	chr2	112282	12	UTR3	UTR3:EXON_MRNA	SEPTIN2	ENSG00000168385.18	ENST00000391973.6:ENST00000360051.7:ENST00000616972.4:ENST00000407971.5:ENST00000391971.7:ENST00000402092.6	protein_coding	protein_coding	protein_coding	protein_coding	13	115	2	1.26356	2.0122400000000003	2.76092	0.035863	0.00102361	0.152296	0.029231300000000002
chr2	187543406	187543505	1289415	0	-	0.30303	(0.28,0.32]	chr2	135621	136	INTRON	INTRON	TFPI	ENSG00000003436.16	ENST00000233156.9:ENST00000409676.5:ENST00000339091.8:ENST00000421427.5:ENST00000437725.5:ENST00000453013.5:ENST00000417013.5:ENST00000420747.1	protein_coding	protein_coding	protein_coding	protein_coding	5	69	2	1.99988	2.01209	2.0243	0.0364967	0.0228757	0.153759	0.118056
chr9	131190274	131190351	4216295	0	+	0.350649	(0.35,0.378]	chr9	386643	3	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	NUP214	ENSG00000126883.19	ENST00000695497.1:ENST00000695498.1:ENST00000695496.1:ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000525980.5:ENST00000526346.5:ENST00000531929.5:ENST00000651334.1:ENST00000524578.6:ENST00000453861.6:ENST00000470765.5:ENST00000483497.6:ENST00000465486.6:ENST00000531600.1:ENST00000528114.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	14	153	2	1.98201	2.01205	2.04209	0.00451871	0.00246593	0.0595107	0.0459275
chr6	87168576	87168676	2913387	0	+	0.5	(0.476,0.515]	chr6	275276	125	INTRON	INTRON	ZNF292	ENSG00000188994.13	ENST00000392985.3:ENST00000369577.8:ENST00000369578.6:ENST00000518845.1:ENST00000339907.8:ENST00000496806.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	61	2	1.82595	2.01202	2.19809	0.020317	0.0202339	0.121522	0.109955
chr11	48000106	48000206	4789414	0	+	0.49	(0.476,0.515]	chr11	443265	187	INTRON	INTRON	PTPRJ	ENSG00000149177.14	ENST00000418331.7:ENST00000440289.6:ENST00000527952.1:ENST00000534219.5	protein_coding	protein_coding	protein_coding	protein_coding	5	51	2	1.91525	2.0119949999999998	2.10874	0.0285608	0.0232571	0.127416	0.12666
chr8	110988716	110988816	4027082	0	-	0.36	(0.35,0.378]	chr8	367843	52	INTRON	INTRON	LINC01608	ENSG00000253877.6	ENST00000670392.1:ENST00000658597.1:ENST00000662310.1:ENST00000671489.1:ENST00000668858.1:ENST00000669698.1:ENST00000665803.1:ENST00000658028.1:ENST00000664704.1:ENST00000661954.1:ENST00000661561.1:ENST00000658081.1:ENST00000667145.1:ENST00000658119.1:ENST00000524283.5:ENST00000669893.1:ENST00000660015.1:ENST00000668956.1:ENST00000657323.1:ENST00000663408.1:ENST00000653924.1:ENST00000659834.1:ENST00000658508.1:ENST00000669744.1:ENST00000658733.1:ENST00000657532.1:ENST00000665011.1:ENST00000523557.2	lncRNA	lncRNA	lncRNA	lncRNA	8	78	2	1.46325	2.01198	2.56071	0.0346125	0.00725312	0.148144	0.072984
chr20	35692964	35693059	7336046	0	-	0.484211	(0.476,0.515]	chr20	747360	2	INTRON	INTRON	NFS1	ENSG00000244005.13	ENST00000374092.9:ENST00000374085.5:ENST00000397425.5:ENST00000440385.5:ENST00000541387.5:ENST00000413203.5:ENST00000456462.5:ENST00000419569.5:ENST00000421540.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	51	2	1.86014	2.011955	2.16377	0.0277606	0.0243026	0.137011	0.12011
chr22	21582167	21582267	7481849	0	+	0.45	(0.44,0.476]	chr22	763232	134	INTRON	INTRON	UBE2L3	ENSG00000185651.16	ENST00000458578.6:ENST00000545681.2:ENST00000696046.1:ENST00000342192.9:ENST00000496722.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	93	2	1.16973	2.0119	2.85407	0.0750733	4.30929e-4	0.193571	0.018618
chr1	113438045	113438145	189189	0	+	0.52	(0.515,0.57]	chr1	20964	337	INTRON	INTRON	MAGI3	ENSG00000081026.19	ENST00000307546.14:ENST00000369617.8:ENST00000369615.5:ENST00000369611.4:ENST00000486456.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	28	2	1.79136	2.011885	2.23241	0.0638444	0.0581268	0.188651	0.177811
chr12	57076549	57076647	5336828	0	-	0.561224	(0.515,0.57]	chr12	510380	33	INTRON	INTRON	NEMP1	ENSG00000166881.10	ENST00000300128.9:ENST00000379391.7:ENST00000554340.1:ENST00000553654.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	28	2	1.79136	2.011885	2.23241	0.0638444	0.0581268	0.188651	0.177811
chr5	134772795	134772895	2490519	0	+	0.52	(0.515,0.57]	chr5	237893	14	INTRON	INTRON	DDX46	ENSG00000145833.16	ENST00000628477.2:ENST00000452510.7:ENST00000507392.5:ENST00000354283.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	28	2	1.79136	2.011885	2.23241	0.0638444	0.0581268	0.188651	0.177811
chr5	139284100	139284200	2499278	0	+	0.33	(0.32,0.35]	chr5	238891	6	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	MATR3:SNHG4	ENSG00000280987.4:ENSG00000281398.4	ENST00000509990.5:ENST00000506147.5:ENST00000512107.5:ENST00000361059.7:ENST00000394800.6:ENST00000502929.5:ENST00000504203.5:ENST00000514694.5:ENST00000509644.5:ENST00000505016.2:ENST00000505522.6:ENST00000502394.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	8	98	2	1.9587	2.01174	2.06478	0.0147778	0.00997254	0.106702	0.0842795
chr2	38370940	38371040	1099285	0	-	0.36	(0.35,0.378]	chr2	117880	115	INTRON	INTRON	ATL2	ENSG00000119787.14	ENST00000378954.9:ENST00000406122.5:ENST00000405384.6:ENST00000402054.5:ENST00000419554.6:ENST00000651368.1:ENST00000452935.6:ENST00000449130.5:ENST00000443098.5:ENST00000456736.5:ENST00000472097.1:ENST00000451483.1:ENST00000416222.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	79	2	1.90784	2.011575	2.11531	0.0165983	0.0119629	0.102621	0.0962115
chr6	3262087	3262186	2789275	0	+	0.656566	(0.57,1]	chr6	263445	25	INTRON	INTRON	PSMG4	ENSG00000180822.12	ENST00000509933.1:ENST00000380306.8:ENST00000380305.4:ENST00000438998.7:ENST00000419065.6:ENST00000473000.2:ENST00000324987.4:ENST00000451246.2:ENST00000454610.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	27	2	1.63919	2.01155	2.38391	0.05421	0.0104374	0.164887	0.0902296
chr16	29525270	29525370	6470818	0	-	0.37	(0.35,0.378]	chr16	625147	194	INTRON	INTRON	ENSG00000288632	ENSG00000288632.1	ENST00000675579.1	lncRNA	lncRNA	lncRNA	lncRNA	18	194	2	1.89796	2.0115250000000002	2.12509	0.00238687	0.00184388	0.0450133	0.0388609
chr17	61866361	61866461	6808957	0	-	0.37	(0.35,0.378]	chr17	672646	11	UTR3	UTR3:EXON_MRNA	INTS2	ENSG00000108506.13	ENST00000251334.7:ENST00000617492.4:ENST00000444766.7:ENST00000646745.1:ENST00000647009.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	131	2	1.82204	2.01152	2.201	0.00874368	0.00256708	0.0788605	0.0466761
chr6	7126368	7126468	2798549	0	+	0.44	(0.408,0.44]	chr6	263723	173	INTRON	INTRON	RREB1	ENSG00000124782.21	ENST00000379933.7:ENST00000491191.5:ENST00000471433.5:ENST00000379938.7:ENST00000467782.5:ENST00000349384.10:ENST00000334984.10:ENST00000475946.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	72	2	1.84516	2.0115	2.17784	0.0193431	0.00916282	0.108861	0.0855292
chr19	47614503	47614603	7085816	0	+	0.62	(0.57,1]	chr19	709045	65	INTRON	INTRON	ENSG00000268746	ENSG00000268746.1	ENST00000599924.1	lncRNA	lncRNA	lncRNA	lncRNA	5	27	2	1.74185	2.01144	2.28103	0.0401765	0.0151554	0.143911	0.108535
chr2	169943920	169944018	909326	0	+	0.408163	(0.378,0.408]	chr2	100326	9	INTRON	INTRON	UBR3	ENSG00000144357.18	ENST00000272793.11:ENST00000430321.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	34	2	1.76032	2.01142	2.26252	0.0721577	0.056222	0.187433	0.18407
chr1	243067722	243067822	667030	0	-	0.33	(0.32,0.35]	chr1	79138	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	LINC01347	ENSG00000214837.8	ENST00000627498.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	13	149	2	1.63696	2.011365	2.38577	0.0157666	0.00114552	0.101453	0.0311766
chr19	1076466	1076565	6993741	0	+	0.383838	(0.378,0.408]	chr19	692778	12	INTRON	INTRON	ARHGAP45	ENSG00000180448.11	ENST00000539243.6:ENST00000313093.7:ENST00000587602.5:ENST00000591293.2:ENST00000590214.5:ENST00000586866.5:ENST00000543365.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	77	2	1.85968	2.011355	2.16303	0.0252473	0.0075228099999999996	0.12011	0.0773151
chr4	39732627	39732726	1953337	0	+	0.343434	(0.32,0.35]	chr4	195630	339	INTRON	INTRON	UBE2K	ENSG00000078140.14	ENST00000510934.5:ENST00000261427.10:ENST00000438068.6:ENST00000513231.5:ENST00000503368.5:ENST00000445950.2:ENST00000510719.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	17	198	2	1.58878	2.01135	2.43392	0.0161796	2.47306e-4	0.101453	0.0139253
chr19	8456673	8456773	7010881	0	+	0.52	(0.515,0.57]	chr19	696143	7	INTRON	INTRON	HNRNPM	ENSG00000099783.12	ENST00000348943.7:ENST00000597813.5:ENST00000600092.5:ENST00000325495.9:ENST00000600806.5:ENST00000620401.4:ENST00000594907.5:ENST00000596984.5:ENST00000601645.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	44	2	1.56681	2.01133	2.45585	0.064862	0.00797827	0.179394	0.0798772
chr21	9094531	9094631	7426284	0	-	0.45	(0.44,0.476]	chr21	757579	62	INTRON	INTRON	TEKT4P2	ENSG00000188681.12	ENST00000690061.1:ENST00000689141.1:ENST00000688310.1:ENST00000687537.1:ENST00000690096.1:ENST00000687888.1:ENST00000690389.1:ENST00000684989.1:ENST00000416067.6:ENST00000693307.1:ENST00000692383.1:ENST00000685666.1:ENST00000688451.1:ENST00000691190.1:ENST00000685532.1:ENST00000687488.1:ENST00000690713.1:ENST00000691834.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	8	79	2	1.99228	2.01131	2.03034	0.0173569	0.00615695	0.104189	0.0711648
chr22	21770507	21770605	7560407	0	-	0.489796	(0.476,0.515]	chr22	773354	8	INTRON	INTRON	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	19	179	2	1.80413	2.011275	2.21842	0.00251931	0.00124428	0.0465056	0.0322969
chr19	36219988	36220088	7057473	0	+	0.43	(0.408,0.44]	chr19	704664	14	INTRON	INTRON	ZNF146	ENSG00000167635.12	ENST00000456324.5:ENST00000591063.5:ENST00000443387.3:ENST00000586094.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	128	2	1.64039	2.01124	2.38209	0.0110595	0.0013549	0.0929058	0.0336321
chr6	136288718	136288816	3231117	0	-	0.397959	(0.378,0.408]	chr6	300408	57	INTRON	INTRON	BCLAF1	ENSG00000029363.17	ENST00000640069.1:ENST00000531224.6:ENST00000353331.8:ENST00000527536.5:ENST00000527613.5:ENST00000530767.5:ENST00000527759.5:ENST00000534269.5:ENST00000532384.5:ENST00000530429.5:ENST00000628517.2:ENST00000529826.5:ENST00000528229.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	50	2	1.56313	2.011225	2.45932	0.0474151	0.0346754	0.153019	0.148144
chr7	97138047	97138145	3357163	0	+	0.561224	(0.515,0.57]	chr7	313212	12	INTRON	INTRON	SDHAF3	ENSG00000196636.8	ENST00000432641.3:ENST00000489852.1:ENST00000360382.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	44	2	1.69407	2.011215	2.32836	0.0459452	0.0126662	0.149888	0.0982897
chr7	152287075	152287175	3679793	0	-	0.55	(0.515,0.57]	chr7	341623	3	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000684262.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	44	2	1.69407	2.011215	2.32836	0.0459452	0.0126662	0.149888	0.0982897
chr1	171530342	171530442	253674	0	+	0.49	(0.476,0.515]	chr1	30152	21	INTRON	INTRON	PRRC2C	ENSG00000117523.18	ENST00000647382.2:ENST00000367742.7:ENST00000476522.5:ENST00000338920.8:ENST00000426496.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	59	2	1.91368	2.01121	2.10874	0.0285608	0.0135123	0.12666	0.101363
chr6	157409752	157409852	3011828	0	+	0.42	(0.408,0.44]	chr6	281268	271	INTRON	INTRON	ZDHHC14	ENSG00000175048.17	ENST00000414563.6:ENST00000359775.10	protein_coding	protein_coding	protein_coding	protein_coding	4	43	2	1.74775	2.011195	2.27464	0.0735403	0.0158016	0.190238	0.109464
chrX	73846529	73846629	7837989	0	-	0.41	(0.408,0.44]	chrX	799611	92	EXON_LNCRNA	EXON_LNCRNA:INTRON	XIST	ENSG00000229807.13	ENST00000650627.1:ENST00000434839.3:ENST00000429829.6:ENST00000650186.1:ENST00000635841.2:ENST00000650637.1:ENST00000648970.1	lncRNA	lncRNA	lncRNA	lncRNA	22	216	2	1.64955	2.01119	2.37283	0.00713145	1.41153e-4	0.0723634	0.0102551
chr16	220048	220148	6426094	0	-	0.36	(0.35,0.378]	chr16	617437	104	INTRON	INTRON	LUC7L	ENSG00000007392.17	ENST00000337351.8:ENST00000426094.5:ENST00000397783.5:ENST00000629543.2:ENST00000490762.5:ENST00000293872.13:ENST00000419516.5:ENST00000397780.5:ENST00000418978.5:ENST00000430864.5:ENST00000443357.5:ENST00000494366.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	15	163	2	1.76452	2.0111600000000003	2.2578	0.0109566	5.84286e-4	0.0873179	0.0219761
chr11	66631618	66631717	4810953	0	+	0.464646	(0.44,0.476]	chr11	447879	18	INTRON	INTRON	RBM14-RBM4	ENSG00000248643.5	ENST00000412278.2:ENST00000511114.1:ENST00000421355.1:ENST00000500635.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	21	194	2	1.70716	2.011135	2.31511	0.00315752	7.90141e-4	0.0515761	0.0259642
chr19	2233542	2233641	7115719	0	-	0.545455	(0.515,0.57]	chr19	715285	5	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	PLEKHJ1	ENSG00000104886.12	ENST00000587394.6:ENST00000587962.6:ENST00000326631.7:ENST00000591099.6:ENST00000589097.6:ENST00000588450.1:ENST00000589791.5:ENST00000588633.1:ENST00000588545.2:ENST00000586608.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	70	2	1.96006	2.0110599999999996	2.06206	0.0135396	0.00725161	0.101363	0.072984
chr3	57596973	57597073	1706287	0	-	0.64	(0.57,1]	chr3	175955	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ARF4	ENSG00000168374.11	ENST00000303436.11:ENST00000496292.5:ENST00000489843.1:ENST00000486310.5:ENST00000483848.5:ENST00000463880.1:ENST00000493378.1:ENST00000495354.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	39	2	1.91937	2.010985	2.1026	0.0468438	0.00326268	0.167716	0.0508595
chr1	193129673	193129773	284685	0	+	0.51	(0.476,0.515]	chr1	32754	1	SS3_PROX	SS3_PROX:INTRON	CDC73	ENSG00000134371.14	ENST00000649895.1:ENST00000643006.1:ENST00000367435.5:ENST00000650197.1:ENST00000643784.1:ENST00000648071.1:ENST00000635846.1:ENST00000649606.1:ENST00000647662.1:ENST00000482484.1:ENST00000649706.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	38	2	1.61586	2.0109700000000004	2.40608	0.0567093	0.0425709	0.185107	0.148082
chr17	75376990	75377090	6837511	0	-	0.5	(0.476,0.515]	chr17	675716	438	INTRON	INTRON	GRB2	ENSG00000177885.15	ENST00000316615.9:ENST00000316804.10:ENST00000392562.5:ENST00000392564.5:ENST00000392563.5:ENST00000648046.1:ENST00000578961.5:ENST00000582582.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	38	2	1.61586	2.0109700000000004	2.40608	0.0567093	0.0425709	0.185107	0.148082
chr4	70926133	70926233	1970743	0	+	0.49	(0.476,0.515]	chr4	197571	232	INTRON	INTRON	MOB1B	ENSG00000173542.9	ENST00000502869.5:ENST00000509041.5:ENST00000309395.7:ENST00000396051.2:ENST00000511449.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	38	2	1.61586	2.0109700000000004	2.40608	0.0567093	0.0425709	0.185107	0.148082
chr6	35387507	35387607	2852428	0	+	0.49	(0.476,0.515]	chr6	269491	400	INTRON	INTRON	PPARD	ENSG00000112033.14	ENST00000418635.6:ENST00000448077.6:ENST00000360694.8:ENST00000311565.4:ENST00000337400.6	protein_coding	protein_coding	protein_coding	protein_coding	4	38	2	1.61586	2.0109700000000004	2.40608	0.0567093	0.0425709	0.185107	0.148082
chrX	123608709	123608808	7877764	0	-	0.40404	(0.378,0.408]	chrX	802391	46	INTRON	INTRON	THOC2	ENSG00000125676.20	ENST00000448128.5:ENST00000245838.13:ENST00000441692.5:ENST00000492203.1:ENST00000497887.5:ENST00000618150.4:ENST00000432353.5:ENST00000455053.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	11	112	2	1.55777	2.010965	2.46416	0.0193744	0.00175593	0.119831	0.0376652
chr4	139166074	139166174	2247236	0	-	0.52	(0.515,0.57]	chr4	219601	262	INTRON	INTRON	ELF2	ENSG00000109381.21	ENST00000394235.6:ENST00000686138.1:ENST00000511184.5:ENST00000511006.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	68	2	1.97035	2.0109500000000002	2.05155	0.0195832	0.00440913	0.109483	0.0609369
chr20	47352273	47352372	7349473	0	-	0.454545	(0.44,0.476]	chr20	749366	5	INTRON	INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000435836.5	protein_coding	protein_coding	protein_coding	protein_coding	11	110	2	1.86755	2.010905	2.15426	0.00715715	0.00372059	0.0756118	0.0535094
chr9	96411151	96411250	4295300	0	-	0.414141	(0.408,0.44]	chr9	394970	125	INTRON	INTRON	ZNF367	ENSG00000165244.7	ENST00000375256.5	protein_coding	protein_coding	protein_coding	protein_coding	6	52	2	1.27662	2.0109	2.74518	0.0787183	0.0152229	0.198567	0.108535
chr19	17274882	17274980	7029538	0	+	0.520408	(0.515,0.57]	chr19	699872	3	INTRON	INTRON	BABAM1	ENSG00000105393.16	ENST00000594247.5:ENST00000447614.6:ENST00000359435.8:ENST00000599474.5:ENST00000598188.6:ENST00000601043.5:ENST00000595393.5:ENST00000596335.5:ENST00000601436.5:ENST00000448635.2:ENST00000595632.5:ENST00000601938.5:ENST00000602066.5:ENST00000598567.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	69	2	1.94449	2.01085	2.07721	0.0122196	0.0067022	0.0910127	0.0738715
chr8	102357374	102357473	4012198	0	-	0.414141	(0.408,0.44]	chr8	367218	99	INTRON	INTRON	UBR5	ENSG00000104517.13	ENST00000520539.6:ENST00000220959.8:ENST00000521922.5	protein_coding	protein_coding	protein_coding	protein_coding	12	109	2	1.82641	2.010825	2.19524	0.00990486	0.003836	0.0838372	0.0562562
chr7	135477093	135477193	3648631	0	-	0.53	(0.515,0.57]	chr7	339187	383	INTRON	INTRON	CNOT4	ENSG00000080802.20	ENST00000541284.6:ENST00000451834.5:ENST00000423368.6:ENST00000361528.8:ENST00000428680.6:ENST00000315544.6:ENST00000491203.5:ENST00000498534.5:ENST00000465721.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	44	2	1.7492	2.01079	2.27238	0.0382504	0.0161808	0.15832	0.101453
chr16	84731269	84731369	6410216	0	+	0.45	(0.44,0.476]	chr16	615272	144	INTRON	INTRON	USP10	ENSG00000103194.16	ENST00000562743.5:ENST00000540269.6:ENST00000563892.5:ENST00000562092.1:ENST00000569511.5:ENST00000219473.12:ENST00000570191.5:ENST00000563048.5:ENST00000562283.5:ENST00000563386.5:ENST00000569038.5:ENST00000570053.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	13	127	2	1.30757	2.010755	2.71394	0.0432014	1.54858e-4	0.148082	0.0106835
chr7	130073307	130073407	3413622	0	+	0.52	(0.515,0.57]	chr7	319098	21	INTRON	INTRON	KLHDC10	ENSG00000128607.14	ENST00000335420.10:ENST00000463413.1:ENST00000468226.1	protein_coding	protein_coding	protein_coding	protein_coding	9	66	2	1.48296	2.010705	2.53845	0.0243813	0.00632226	0.131358	0.0687526
chrX	44880986	44881086	7648680	0	+	0.38	(0.378,0.408]	chrX	782726	66	INTRON	INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000675440.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000621147.5:ENST00000475233.1:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	74	2	1.84831	2.0106349999999997	2.17296	0.0172621	0.0110512	0.111749	0.0873897
chr10	11585235	11585335	4555804	0	-	0.38	(0.378,0.408]	chr10	420461	115	INTRON	INTRON	USP6NL	ENSG00000148429.15	ENST00000609104.6:ENST00000606752.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	77	2	1.58349	2.01063	2.43777	0.0653091	0.00144299	0.180158	0.034834
chr1	32793617	32793716	415922	0	-	0.30303	(0.28,0.32]	chr1	50188	20	INTRON	INTRON	YARS1	ENSG00000134684.13	ENST00000373477.9:ENST00000676297.1:ENST00000674654.1:ENST00000674629.1:ENST00000675785.2:ENST00000481895.6:ENST00000616261.2:ENST00000466052.1:ENST00000470377.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	18	194	2	1.57456	2.010615	2.44667	0.00795298	0.00267187	0.0798258	0.0464128
chr21	6326667	6326766	7364840	0	+	0.292929	(0.28,0.32]	chr21	751664	22	INTRON	INTRON	ENSG00000278903	ENSG00000278903.4	ENST00000688458.1:ENST00000689306.1:ENST00000692898.1:ENST00000624576.3:ENST00000623738.3:ENST00000692237.1:ENST00000692046.1:ENST00000689354.1:ENST00000624165.1	lncRNA	lncRNA	lncRNA	lncRNA	8	110	2	1.72287	2.010515	2.29816	0.0286502	0.00479572	0.139456	0.0602209
chr6	68643431	68643531	2886400	0	+	0.33	(0.32,0.35]	chr6	273730	36	INTRON	INTRON	ADGRB3	ENSG00000135298.15	ENST00000370598.6:ENST00000684661.1:ENST00000546190.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	61	2	1.67393	2.010515	2.3471	0.0496128	0.0156413	0.174685	0.101393
chr5	146150683	146150780	2747078	0	-	0.515464	(0.515,0.57]	chr5	258830	6	INTRON	INTRON	LARS1	ENSG00000133706.19	ENST00000674174.1:ENST00000674170.1:ENST00000674479.1:ENST00000674309.1:ENST00000674218.1:ENST00000674467.1:ENST00000674290.1:ENST00000674447.1:ENST00000674270.1:ENST00000674383.1:ENST00000674191.1:ENST00000674158.1:ENST00000394434.7:ENST00000674398.1:ENST00000674277.1:ENST00000274562.13:ENST00000510191.5:ENST00000674310.1:ENST00000512412.2:ENST00000508667.5:ENST00000507095.1:ENST00000674417.1:ENST00000674450.1:ENST00000674412.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	43	2	1.49552	2.01028	2.52504	0.0385038	0.029342	0.159277	0.128055
chr10	79753138	79753238	4656945	0	-	0.41	(0.408,0.44]	chr10	429003	67	INTRON	INTRON	NUTM2B-AS1	ENSG00000225484.7	ENST00000671459.1:ENST00000596088.5:ENST00000600376.5:ENST00000601369.6:ENST00000662025.1:ENST00000670682.1:ENST00000619625.4:ENST00000658528.1:ENST00000477192.6	lncRNA	lncRNA	lncRNA	lncRNA	4	44	2	1.85305	2.010255	2.16746	0.0543543	0.024436	0.182243	0.12011
chr8	105708531	105708631	3841154	0	+	0.43	(0.408,0.44]	chr8	354098	172	INTRON	INTRON	ZFPM2	ENSG00000169946.14	ENST00000407775.7:ENST00000520492.5:ENST00000511341.6:ENST00000517361.1:ENST00000522296.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	78	2	1.75791	2.010215	2.26252	0.0378795	0.00399285	0.157034	0.0550622
chr3	5189977	5190075	1354203	0	+	0.326531	(0.32,0.35]	chr3	142413	5	INTRON	INTRON	EDEM1	ENSG00000134109.11	ENST00000434243.5:ENST00000256497.9:ENST00000465369.5:ENST00000465187.1:ENST00000445686.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	81	2	1.94202	2.010115	2.07821	0.0486128	0.00473999	0.153946	0.0634645
chr7	132900976	132901076	3644072	0	-	0.28	[0,0.28]	chr7	338848	136	INTRON	INTRON	CHCHD3	ENSG00000106554.13	ENST00000262570.10:ENST00000448878.6:ENST00000496427.5:ENST00000423635.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	91	2	1.73226	2.0100599999999997	2.28786	0.0524108	0.00782185	0.160429	0.0788675
chr11	34456010	34456106	4768830	0	+	0.479167	(0.476,0.515]	chr11	441244	1	CDS	CDS:UTR3:EXON_MRNA	CAT	ENSG00000121691.7	ENST00000241052.5:ENST00000650153.1:ENST00000528104.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	51	2	1.96833	2.009935	2.05154	0.0336015	0.0195007	0.134145	0.119967
chr13	95992072	95992172	5641832	0	-	0.58	(0.57,1]	chr13	537388	2	INTRON	INTRON	UGGT2	ENSG00000102595.21	ENST00000376747.8:ENST00000465196.5:ENST00000376714.7:ENST00000461329.5:ENST00000397618.7:ENST00000467305.1:ENST00000376712.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	41	2	1.77528	2.00981	2.24434	0.0141212	0.00677343	0.0959618	0.074225
chr7	157198523	157198623	3454548	0	+	0.47	(0.44,0.476]	chr7	322959	58	INTRON	INTRON	UBE3C	ENSG00000009335.18	ENST00000348165.10	protein_coding	protein_coding	protein_coding	protein_coding	17	165	2	1.79684	2.00978	2.22272	0.00362703	0.00125815	0.055479	0.0323721
chr5	6608748	6608844	2566524	0	-	0.447917	(0.44,0.476]	chr5	245907	10	INTRON	INTRON	NSUN2	ENSG00000037474.15	ENST00000264670.11:ENST00000504374.5:ENST00000505892.5:ENST00000506139.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	90	2	1.92621	2.00977	2.09333	0.00813281	0.00776307	0.0810802	0.0757646
chr10	42341555	42341655	4603189	0	-	0.31	(0.28,0.32]	chr10	424077	6	INTRON	INTRON	ENSG00000215146	ENSG00000215146.5	ENST00000609841.1:ENST00000650175.1:ENST00000423987.2:ENST00000609034.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	4	55	2	1.96475	2.009665	2.05458	0.0428385	0.0381508	0.162255	0.141764
chr3	129315162	129315260	1815335	0	-	0.612245	(0.57,1]	chr3	182488	5	UTR3	UTR3:EXON_MRNA	H1-10	ENSG00000184897.6	ENST00000333762.6	protein_coding	protein_coding	protein_coding	protein_coding	41	206	2	1.63279	2.00956	2.38633	0.00138619	7.01951e-6	0.0341261	0.00198457
chr1	186402513	186402612	277822	0	+	0.434343	(0.408,0.44]	chr1	32482	31	INTRON	INTRON	ODR4	ENSG00000157181.16	ENST00000367470.8:ENST00000287859.11:ENST00000419367.8:ENST00000478571.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	120	2	1.80815	2.009445	2.21074	0.0109379	0.0014216	0.0873034	0.0346633
chr1	32660653	32660752	65925	0	+	0.363636	(0.35,0.378]	chr1	8422	27	INTRON	INTRON	RBBP4	ENSG00000162521.19	ENST00000414241.7:ENST00000527118.5:ENST00000373493.10:ENST00000401893.7:ENST00000524393.5:ENST00000492348.6:ENST00000526193.5:ENST00000373485.5:ENST00000477563.6:ENST00000458695.6:ENST00000445722.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	56	2	1.97646	2.00935	2.04224	0.0363073	0.0193942	0.138959	0.119831
chr8	105361429	105361529	3837670	0	+	0.36	(0.35,0.378]	chr8	354037	24	INTRON	INTRON	ZFPM2	ENSG00000169946.14	ENST00000518180.1:ENST00000407775.7:ENST00000520492.5:ENST00000520027.5:ENST00000524235.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	57	2	1.81767	2.009315	2.20096	0.0640429	0.0087123	0.177882	0.0844834
chr15	44520226	44520325	6015294	0	+	0.545455	(0.515,0.57]	chr15	572993	7	EXON_MRNA	EXON_MRNA:INTRON	CTDSPL2	ENSG00000137770.14	ENST00000260327.9:ENST00000558966.5:ENST00000558373.5:ENST00000560620.1:ENST00000559738.1:ENST00000559175.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	33	2	1.67758	2.009225	2.34087	0.0471728	0.0469761	0.168737	0.151917
chr19	47135427	47135527	7083914	0	+	0.36	(0.35,0.378]	chr19	708737	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	SAE1	ENSG00000142230.13	ENST00000594144.5:ENST00000594526.5:ENST00000597808.5:ENST00000413379.7:ENST00000600706.5:ENST00000270225.12:ENST00000598840.5:ENST00000414294.6:ENST00000600753.1:ENST00000660039.1:ENST00000664120.1:ENST00000596995.1:ENST00000392776.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	65	2	1.49446	2.009205	2.52395	0.054297	0.00824736	0.182243	0.0773378
chr3	47142048	47142147	1681385	0	-	0.363636	(0.35,0.378]	chr3	171624	150	INTRON	INTRON	SETD2	ENSG00000181555.22	ENST00000691544.1:ENST00000638947.2:ENST00000409792.4:ENST00000412450.1	protein_coding	protein_coding	protein_coding	protein_coding	6	68	2	1.6599	2.00914	2.35838	0.0545616	0.00468156	0.165292	0.0631419
chr2	235497846	235497946	1041373	0	+	0.52	(0.515,0.57]	chr2	111217	26	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	42	2	1.32981	2.00907	2.68833	0.0640038	0.0184931	0.199279	0.108861
chr1	35921396	35921496	71046	0	+	0.5	(0.476,0.515]	chr1	9124	18	UTR3	UTR3:EXON_MRNA	AGO1	ENSG00000092847.13	ENST00000373204.6:ENST00000674426.1:ENST00000674304.1	protein_coding	protein_coding	protein_coding	protein_coding	30	299	2	1.68317	2.00906	2.33495	0.00293205	1.39866e-4	0.0496505	0.0107354
chr5	34195204	34195303	2600038	0	-	0.191919	[0,0.28]	chr5	247057	58	INTRON	INTRON	GUSBP18	ENSG00000215158.9	ENST00000507274.1:ENST00000508395.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	15	157	2	1.2476	2.009035	2.77047	0.0358581	0.00505301	0.152277	0.0621733
chr5	38958230	38958286	2604457	0	-	0.232143	[0,0.28]	chr5	247782	1	SS5_PROX	SS5_PROX:INTRON	RICTOR	ENSG00000164327.13	ENST00000357387.8:ENST00000511516.5:ENST00000296782.9:ENST00000503698.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	75	2	1.95669	2.009005	2.06132	0.0408268	0.0237518	0.1451	0.129075
chr2	10209015	10209115	691595	0	+	0.36	(0.35,0.378]	chr2	81113	99	INTRON	INTRON	RRM2	ENSG00000171848.16	ENST00000381786.7	protein_coding	processed_transcript	protein_coding	processed_transcript	4	47	2	1.9755	2.00887	2.04224	0.0398617	0.0363073	0.161534	0.138959
chr1	203803715	203803815	296761	0	+	0.5	(0.476,0.515]	chr1	34134	3	INTRON	INTRON	ZC3H11A:ZBED6	ENSG00000058673.17:ENSG00000257315.3	ENST00000367210.3:ENST00000453771.5:ENST00000432282.5:ENST00000638800.1:ENST00000367214.5:ENST00000639812.1:ENST00000367212.7:ENST00000332127.8:ENST00000550078.2:ENST00000495527.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	77	2	1.5183	2.008855	2.49941	0.0223248	0.00811651	0.124527	0.0766625
chr22	20121474	20121570	7478630	0	+	0.489583	(0.476,0.515]	chr22	762785	20	INTRON	INTRON	RANBP1	ENSG00000099901.17	ENST00000435265.5:ENST00000432879.5:ENST00000430524.6:ENST00000402752.5:ENST00000488484.1:ENST00000331821.7:ENST00000411892.5:ENST00000416427.5:ENST00000421656.5:ENST00000423859.5:ENST00000418705.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	23	223	2	1.78299	2.00883	2.23467	0.00243848	5.09804e-4	0.0456956	0.020816
chr3	177027928	177028026	1870712	0	-	0.316327	(0.28,0.32]	chr3	187282	2	INTRON	INTRON	TBL1XR1	ENSG00000177565.18	ENST00000636864.1:ENST00000457928.7:ENST00000430069.5:ENST00000637659.1:ENST00000673974.1:ENST00000631253.2:ENST00000352800.10:ENST00000422442.6:ENST00000626758.1:ENST00000636348.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	10	129	2	1.78733	2.008715	2.2301	0.0276087	0.00173877	0.123904	0.038529
chr3	196059314	196059405	1897307	0	-	0.417582	(0.408,0.44]	chr3	189913	3	INTRON	INTRON	TFRC	ENSG00000072274.13	ENST00000420415.5:ENST00000360110.9:ENST00000392396.7:ENST00000475593.5:ENST00000483983.5:ENST00000463356.5:ENST00000465288.5:ENST00000477148.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	18	179	2	1.79857	2.00868	2.21879	0.00359183	9.79079e-4	0.0551259	0.0285475
chr6	28379543	28379641	3074553	0	-	0.438776	(0.408,0.44]	chr6	285812	7	UTR3	UTR3:EXON_MRNA	ZSCAN12	ENSG00000158691.15	ENST00000361028.5:ENST00000396827.3	protein_coding	protein_coding	protein_coding	protein_coding	5	55	2	1.93243	2.008645	2.08486	0.0441194	0.0145898	0.162255	0.0981689
chr3	196059132	196059223	1897305	0	-	0.516484	(0.515,0.57]	chr3	189913	1	INTRON	INTRON	TFRC	ENSG00000072274.13	ENST00000420415.5:ENST00000360110.9:ENST00000392396.7:ENST00000475593.5:ENST00000483983.5:ENST00000463356.5:ENST00000465288.5:ENST00000477148.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	46	2	1.94945	2.008515	2.06758	0.0414068	0.0140038	0.161557	0.0959618
chr5	177428389	177428488	2555869	0	+	0.555556	(0.515,0.57]	chr5	244175	11	INTRON	INTRON	GRK6	ENSG00000198055.11	ENST00000502598.5:ENST00000506296.5:ENST00000511244.5:ENST00000355472.10:ENST00000507633.5:ENST00000393576.7:ENST00000528793.5:ENST00000355958.9:ENST00000512684.1	protein_coding	protein_coding	protein_coding	protein_coding	5	46	2	1.94945	2.008515	2.06758	0.0414068	0.0140038	0.161557	0.0959618
chr7	138463401	138463501	3434672	0	+	0.53	(0.515,0.57]	chr7	319959	17	INTRON	INTRON	TRIM24	ENSG00000122779.18	ENST00000343526.9:ENST00000415680.6:ENST00000497516.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	73	2	1.73168	2.0085100000000002	2.28534	0.0119342	0.0061678	0.0962115	0.067653
chr4	39712863	39712963	1953139	0	+	0.51	(0.476,0.515]	chr4	195630	141	INTRON	INTRON	UBE2K	ENSG00000078140.14	ENST00000510934.5:ENST00000261427.10:ENST00000438068.6:ENST00000513231.5:ENST00000503368.5:ENST00000445950.2:ENST00000510719.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	39	372	2	1.98036	2.00851	2.03666	5.60045e-4	3.12239e-4	0.02188	0.0158791
chr3	152399510	152399610	1536298	0	+	0.41	(0.408,0.44]	chr3	160010	29	INTRON	INTRON	MBNL1	ENSG00000152601.18	ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000495875.6:ENST00000324210.10:ENST00000493459.5:ENST00000459747.1:ENST00000460591.5:ENST00000545754.5:ENST00000357472.7:ENST00000324196.9:ENST00000498502.5:ENST00000463374.5:ENST00000485910.5:ENST00000465907.6:ENST00000492948.5:ENST00000485509.5:ENST00000464596.5	protein_coding	protein_coding	protein_coding	protein_coding	7	72	2	1.78881	2.0085	2.22819	0.0370259	0.00373083	0.139194	0.0561984
chr9	137655128	137655228	4223837	0	+	0.39	(0.378,0.408]	chr9	388170	37	INTRON	INTRON	EHMT1	ENSG00000181090.21	ENST00000462484.5:ENST00000371394.6:ENST00000630754.2:ENST00000460843.6:ENST00000626216.2:ENST00000629335.2:ENST00000637335.1:ENST00000636376.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	61	2	1.66594	2.0084850000000003	2.35103	0.0320222	0.014158	0.144995	0.0959618
chr15	58601216	58601315	6192011	0	-	0.525253	(0.515,0.57]	chr15	589892	11	INTRON	INTRON	ADAM10	ENSG00000137845.15	ENST00000260408.8:ENST00000402627.5:ENST00000561288.1:ENST00000482945.5:ENST00000396136.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	82	2	1.13429	2.00848	2.88267	0.0488568	0.00152842	0.173561	0.0353936
chr1	155549272	155549372	562761	0	-	0.48	(0.476,0.515]	chr1	67117	273	INTRON	INTRON	ASH1L	ENSG00000116539.14	ENST00000676814.1:ENST00000392403.8:ENST00000368346.7:ENST00000677213.1:ENST00000678117.1:ENST00000679097.1:ENST00000679333.1:ENST00000679133.1:ENST00000548830.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	78	2	1.84346	2.008465	2.17347	0.0114152	0.010447	0.095586	0.0855102
chr11	5392678	5392778	4897146	0	-	0.53	(0.515,0.57]	chr11	459187	454	INTRON	INTRON	HBG2:ENSG00000239920:HBE1:OR51B5	ENSG00000196565.15:ENSG00000239920.2:ENSG00000213931.7:ENSG00000167355.8	ENST00000380252.6:ENST00000380259.7:ENST00000292896.3:ENST00000380237.5:ENST00000420726.6:ENST00000420465.6:ENST00000415970.6:ENST00000418729.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:nonsense_mediated_decay:processed_transcript	9	70	2	1.56082	2.0083349999999998	2.45585	0.0193183	0.00797827	0.108861	0.0798772
chr19	1273004	1273101	6994627	0	+	0.402062	(0.378,0.408]	chr19	693004	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS3_PROX:SS5_PROX:INTRON	CIRBP	ENSG00000099622.14	ENST00000588030.5:ENST00000586472.5:ENST00000588090.5:ENST00000591935.5:ENST00000586548.5:ENST00000585913.5:ENST00000589710.5:ENST00000586773.5:ENST00000587896.6:ENST00000593093.5:ENST00000413636.6:ENST00000590347.5:ENST00000587169.5:ENST00000320936.9:ENST00000586636.5:ENST00000591376.5:ENST00000589235.5:ENST00000585914.5:ENST00000588344.2:ENST00000592234.5:ENST00000444172.6:ENST00000590188.5:ENST00000588917.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	29	296	2	1.96582	2.008325	2.05083	8.64221e-4	6.97479e-4	0.0268582	0.0241865
chr4	151014044	151014139	2271760	0	-	0.326316	(0.32,0.35]	chr4	220922	14	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	LRBA	ENSG00000198589.14	ENST00000357115.9:ENST00000651943.2:ENST00000510413.5:ENST00000651035.1:ENST00000507224.5:ENST00000514435.1:ENST00000510841.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	90	2	1.41804	2.008295	2.59855	0.0337299	0.00682041	0.146709	0.0712518
chr2	32221109	32221208	730348	0	+	0.353535	(0.35,0.378]	chr2	84231	5	UTR3	UTR3:EXON_MRNA	SLC30A6	ENSG00000152683.14	ENST00000357055.7:ENST00000435660.5:ENST00000282587.9:ENST00000449777.5:ENST00000454324.5:ENST00000379343.6:ENST00000406369.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	120	2	1.82648	2.0082750000000003	2.19007	0.0150408	0.00171971	0.0994339	0.0382846
chr3	152325121	152325221	1535550	0	+	0.39	(0.378,0.408]	chr3	159996	228	INTRON	INTRON	MBNL1	ENSG00000152601.18	ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000495875.6:ENST00000324210.10:ENST00000493459.5:ENST00000459747.1:ENST00000460591.5:ENST00000545754.5:ENST00000357472.7:ENST00000324196.9:ENST00000498502.5:ENST00000463374.5:ENST00000485910.5:ENST00000465907.6:ENST00000492948.5:ENST00000485509.5:ENST00000464596.5	protein_coding	protein_coding	protein_coding	protein_coding	36	362	2	1.88706	2.0082649999999997	2.12947	0.00164677	1.47197e-4	0.0369207	0.0105399
chr2	43916887	43916978	1109780	0	-	0.43956	(0.408,0.44]	chr2	118974	1	INTRON	INTRON	LRPPRC	ENSG00000138095.20	ENST00000260665.12:ENST00000682308.1:ENST00000683459.1:ENST00000683623.1:ENST00000683125.1:ENST00000683994.1:ENST00000684619.1:ENST00000683833.1:ENST00000682546.1:ENST00000683080.1:ENST00000681993.1:ENST00000682585.1:ENST00000683220.1:ENST00000683796.1:ENST00000682607.1:ENST00000683590.1:ENST00000684306.1:ENST00000683213.1:ENST00000683409.1:ENST00000682779.1:ENST00000682885.1:ENST00000684743.1:ENST00000683346.1:ENST00000683072.1:ENST00000682303.1:ENST00000683329.1:ENST00000682933.1:ENST00000684383.1:ENST00000682480.1:ENST00000684290.1:ENST00000684341.1:ENST00000682595.1:ENST00000683645.1:ENST00000683802.1:ENST00000682845.1:ENST00000682295.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	59	2	1.6546400000000001	2.008245	2.36185	0.0329965	0.0133164	0.145298	0.094512
chr7	158697545	158697644	3688727	0	-	0.393939	(0.378,0.408]	chr7	342277	10	INTRON	INTRON	NCAPG2	ENSG00000146918.20	ENST00000356309.8:ENST00000432615.5:ENST00000409423.5:ENST00000409339.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	89	2	1.94559	2.0082	2.07081	0.0211434	0.00563808	0.122929	0.0653997
chr8	105345203	105345303	3837507	0	+	0.33	(0.32,0.35]	chr8	354033	251	INTRON	INTRON	ZFPM2	ENSG00000169946.14	ENST00000518180.1:ENST00000407775.7:ENST00000520492.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	70	2	1.99307	2.00817	2.02327	0.04271	0.00956045	0.148082	0.0863913
chr3	12576941	12577041	1368084	0	+	0.51	(0.476,0.515]	chr3	144100	2	SS5_PROX	SS5_PROX:INTRON	MKRN2	ENSG00000075975.17	ENST00000677816.1:ENST00000677941.1:ENST00000676544.1:ENST00000677237.1:ENST00000679143.1:ENST00000676701.1:ENST00000170447.12:ENST00000411987.5:ENST00000448482.1:ENST00000677142.1:ENST00000676541.1:ENST00000677798.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	120	2	1.75694	2.008165	2.25939	0.0175942	7.40627e-4	0.105143	0.0248934
chr3	149065464	149065563	1840783	0	-	0.343434	(0.32,0.35]	chr3	185163	2	INTRON	INTRON	HLTF	ENSG00000071794.16	ENST00000310053.10:ENST00000465259.5:ENST00000392912.6:ENST00000494055.5	protein_coding	protein_coding	protein_coding	protein_coding	7	84	2	1.77409	2.008165	2.24224	0.0414296	0.00393422	0.146067	0.0572563
chr11	5440855	5440948	4897629	0	-	0.397849	(0.378,0.408]	chr11	459191	3	CDS	CDS:EXON_MRNA:INTRON	HBG2:ENSG00000239920:HBE1:OR51B5:OR51I1	ENSG00000196565.15:ENSG00000239920.2:ENSG00000213931.7:ENSG00000167355.8:ENSG00000167359.8	ENST00000380252.6:ENST00000380259.7:ENST00000292896.3:ENST00000380237.5:ENST00000420726.6:ENST00000420465.6:ENST00000415970.6:ENST00000418729.1:ENST00000380211.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:nonsense_mediated_decay:processed_transcript	5	54	2	1.77782	2.0080649999999998	2.23831	0.0388177	0.0179575	0.143072	0.114265
chr15	56974764	56974864	6032673	0	+	0.26	[0,0.28]	chr15	574663	533	INTRON	INTRON	TCF12	ENSG00000140262.18	ENST00000438423.6:ENST00000267811.9:ENST00000333725.10:ENST00000560190.5:ENST00000559609.5:ENST00000558908.5:ENST00000557843.5:ENST00000557947.5:ENST00000561152.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	75	2	1.99345	2.00805	2.02265	0.0449017	0.0211881	0.149888	0.123133
chr7	152322320	152322420	3680152	0	-	0.48	(0.476,0.515]	chr7	341641	66	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000684262.1:ENST00000682301.1:ENST00000452749.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	122	2	1.50655	2.008	2.50945	0.0316424	2.84218e-4	0.13151	0.0150568
chr5	113018631	113018730	2453816	0	+	0.434343	(0.408,0.44]	chr5	235130	53	UTR3	UTR3:EXON_MRNA	DCP2	ENSG00000172795.17	ENST00000515408.5:ENST00000389063.3	protein_coding	protein_coding	protein_coding	protein_coding	14	117	2	1.50398	2.00798	2.51198	0.0120569	0.00288187	0.0962311	0.0475859
chr11	47522747	47522847	4950097	0	-	0.53	(0.515,0.57]	chr11	464239	1	SS5_PROX	SS5_PROX:INTRON	CELF1	ENSG00000149187.19	ENST00000310513.10:ENST00000687097.1:ENST00000531165.5:ENST00000532048.5:ENST00000530151.5:ENST00000525841.5:ENST00000528434.5:ENST00000543178.5:ENST00000526419.1:ENST00000528538.5:ENST00000526277.1	protein_coding	protein_coding	protein_coding	protein_coding	8	67	2	1.9021	2.0079700000000003	2.11384	0.0118599	0.00848696	0.0899583	0.083161
chr13	32515132	32515231	5572609	0	-	0.424242	(0.408,0.44]	chr13	532549	50	UTR3	UTR3:EXON_MRNA:INTRON	N4BP2L2	ENSG00000244754.9	ENST00000357505.10:ENST00000399396.7:ENST00000504114.5:ENST00000509076.1:ENST00000446957.6:ENST00000674456.1:ENST00000674161.1:ENST00000674422.1:ENST00000674272.1:ENST00000674452.1:ENST00000674384.1:ENST00000505213.5:ENST00000473025.1:ENST00000674219.1:ENST00000267068.5:ENST00000674349.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	71	2	1.96973	2.00792	2.04611	0.016628	0.0108773	0.102621	0.0923273
chr19	34455932	34456029	7053406	0	+	0.546392	(0.515,0.57]	chr19	703551	10	INTRON	INTRON	UBA2	ENSG00000126261.13	ENST00000586313.1:ENST00000246548.9:ENST00000439527.6:ENST00000591016.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	100	2	1.99393	2.0079	2.02187	0.0055814	0.00258891	0.0649993	0.0469725
chr1	88701915	88702015	155945	0	+	0.41	(0.408,0.44]	chr1	17045	169	INTRON	INTRON	PKN2	ENSG00000065243.20	ENST00000316005.11:ENST00000370521.8:ENST00000370513.9	protein_coding	protein_coding	protein_coding	protein_coding	5	52	2	1.74108	2.00786	2.27464	0.0424099	0.0158016	0.148082	0.109464
chr15	85096751	85096850	6090091	0	+	0.414141	(0.408,0.44]	chr15	579554	52	INTRON	INTRON	PDE8A	ENSG00000073417.15	ENST00000310298.8:ENST00000557957.5:ENST00000394553.6:ENST00000339708.9:ENST00000478717.5:ENST00000485596.5:ENST00000559742.5:ENST00000559086.5:ENST00000560789.5:ENST00000557819.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	52	2	1.74108	2.00786	2.27464	0.0424099	0.0158016	0.148082	0.109464
chr4	138196421	138196521	2245368	0	-	0.44	(0.408,0.44]	chr4	219484	108	INTRON	INTRON	SLC7A11	ENSG00000151012.13	ENST00000280612.9:ENST00000509248.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	63	2	1.58763	2.007855	2.42808	0.0639217	0.00331055	0.177824	0.0527031
chr16	24766947	24767046	6329588	0	+	0.40404	(0.378,0.408]	chr16	605945	82	INTRON	INTRON	TNRC6A	ENSG00000090905.19	ENST00000395799.8:ENST00000315183.11:ENST00000562829.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	74	2	1.78703	2.00781	2.22859	0.0240043	0.00763308	0.119664	0.0777238
chr7	76353822	76353922	3562490	0	-	0.52	(0.515,0.57]	chr7	331942	232	INTRON	INTRON	YWHAG	ENSG00000170027.7	ENST00000307630.5	protein_coding	protein_coding	protein_coding	protein_coding	11	90	2	1.66287	2.00781	2.35275	0.0119395	0.00219906	0.0962115	0.0417893
chr16	89419981	89420074	6542893	0	-	0.537634	(0.515,0.57]	chr16	634267	13	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	90	2	1.46708	2.0078	2.54852	0.0272921	7.08868e-4	0.123904	0.0242289
chr2	148702830	148702930	892336	0	+	0.4	(0.378,0.408]	chr2	98796	101	INTRON	INTRON	EPC2	ENSG00000135999.12	ENST00000457184.5:ENST00000258484.11:ENST00000397424.2	protein_coding	protein_coding	protein_coding	protein_coding	7	68	2	1.45934	2.007705	2.55607	0.0442931	0.00704647	0.162302	0.0718189
chr2	235516330	235516430	1041558	0	+	0.39	(0.378,0.408]	chr2	111217	211	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	68	2	1.45934	2.007705	2.55607	0.0442931	0.00704647	0.162302	0.0718189
chr18	31911708	31911805	6961081	0	-	0.412371	(0.408,0.44]	chr18	688762	16	INTRON	INTRON	TRAPPC8	ENSG00000153339.15	ENST00000283351.10:ENST00000580104.5:ENST00000582539.5:ENST00000582513.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	45	2	1.6546400000000001	2.0076850000000004	2.36073	0.0481658	0.0329965	0.153019	0.145298
chr21	42859161	42859261	7467703	0	-	0.47	(0.44,0.476]	chr21	760956	1	SS5_PROX	SS5_PROX:INTRON	WDR4	ENSG00000160193.12	ENST00000330317.6:ENST00000476326.5:ENST00000398208.3:ENST00000492742.5:ENST00000479429.5:ENST00000463902.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	62	2	1.86959	2.00766	2.14573	0.0238593	0.0176166	0.129075	0.105146
chr11	67269271	67269369	4813898	0	+	0.520408	(0.515,0.57]	chr11	448237	21	INTRON	INTRON	GRK2	ENSG00000173020.11	ENST00000308595.10:ENST00000526285.1	protein_coding	protein_coding	protein_coding	protein_coding	6	50	2	1.68552	2.0075950000000002	2.32967	0.0292028	0.0133671	0.141637	0.0946278
chr5	6715419	6715519	2315855	0	+	0.53	(0.515,0.57]	chr5	224266	3	SS5_PROX	SS5_PROX:INTRON	TENT4A	ENSG00000112941.14	ENST00000230859.8:ENST00000515721.1:ENST00000631941.2	protein_coding	protein_coding	protein_coding	protein_coding	6	50	2	1.68552	2.0075950000000002	2.32967	0.0292028	0.0133671	0.141637	0.0946278
chr5	32161359	32161459	2597386	0	-	0.39	(0.378,0.408]	chr5	246744	171	INTRON	INTRON	GOLPH3	ENSG00000113384.14	ENST00000265070.7:ENST00000503610.5:ENST00000512668.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	16	153	2	1.22531	2.00759	2.78987	0.0424725	1.03325e-4	0.148082	0.00862029
chr11	66745319	66745419	4811347	0	+	0.63	(0.57,1]	chr11	447929	4	SS5_PROX	SS5_PROX:INTRON	C11orf80	ENSG00000173715.18	ENST00000534325.5:ENST00000524551.5:ENST00000525908.6:ENST00000540737.7:ENST00000527634.5:ENST00000527368.5:ENST00000531400.6:ENST00000642265.1:ENST00000532565.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	34	2	1.50772	2.0075700000000003	2.50742	0.0388955	0.00631173	0.16071	0.0687526
chr1	26278334	26278429	49942	0	+	0.536842	(0.515,0.57]	chr1	6267	12	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	CEP85	ENSG00000130695.16	ENST00000451429.8:ENST00000252992.8:ENST00000453146.1:ENST00000469609.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	16	125	2	1.74383	2.00756	2.27129	0.00350436	0.00178129	0.0544712	0.0379201
chr1	235239713	235239812	662972	0	-	0.353535	(0.35,0.378]	chr1	78516	49	INTRON	INTRON	ARID4B	ENSG00000054267.22	ENST00000349213.7:ENST00000366603.6:ENST00000264183.9:ENST00000421364.5:ENST00000491632.5:ENST00000418304.1:ENST00000466653.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	14	147	2	1.99502	2.007475	2.01993	0.00730316	0.0018035	0.073467	0.0393002
chr21	22268207	22268307	7385050	0	+	0.49	(0.476,0.515]	chr21	752727	550	INTRON	INTRON	ENSG00000226043	ENSG00000226043.2	ENST00000667099.1:ENST00000654607.1:ENST00000444130.1	lncRNA	lncRNA	lncRNA	lncRNA	13	128	2	1.89129	2.00738	2.12347	0.00569336	0.00222235	0.065612	0.0435144
chr17	70110972	70111072	6828558	0	-	0.39	(0.378,0.408]	chr17	675009	378	INTRON	INTRON	ENSG00000230258	ENSG00000230258.6	ENST00000435112.5	lncRNA	lncRNA	lncRNA	lncRNA	13	132	2	1.92579	2.007355	2.08892	0.00998976	0.00134909	0.0843858	0.0338207
chr19	11939871	11939971	7019901	0	+	0.29	(0.28,0.32]	chr19	697884	142	INTRON	INTRON	ZNF700	ENSG00000196757.8	ENST00000622593.4:ENST00000254321.10	protein_coding	protein_coding	protein_coding	protein_coding	12	154	2	1.93893	2.0072200000000002	2.07551	0.00878302	0.003536	0.0790073	0.0546236
chr3	6560329	6560429	1356845	0	+	0.44	(0.408,0.44]	chr3	142512	16	INTRON	INTRON	ENSG00000189229	ENSG00000189229.12	ENST00000433639.1:ENST00000655754.1:ENST00000653839.1:ENST00000662846.1:ENST00000414438.2:ENST00000658468.1:ENST00000669512.1:ENST00000667028.1:ENST00000655541.1:ENST00000668643.1:ENST00000671568.1:ENST00000671036.1:ENST00000669798.1:ENST00000655753.1:ENST00000655856.1:ENST00000658398.1:ENST00000661518.1:ENST00000661279.1:ENST00000655495.1:ENST00000663041.1:ENST00000659827.1:ENST00000667716.1:ENST00000662508.1:ENST00000668416.1:ENST00000658133.1:ENST00000342990.4:ENST00000660054.1:ENST00000671370.1	lncRNA	lncRNA	lncRNA	lncRNA	10	99	2	1.97721	2.00708	2.03695	0.0121661	0.00333392	0.0910127	0.0528877
chr3	47759853	47759952	1684856	0	-	0.494949	(0.476,0.515]	chr3	172116	135	INTRON	INTRON	SMARCC1	ENSG00000173473.11	ENST00000254480.10:ENST00000425518.5:ENST00000454240.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	63	2	1.52615	2.00702	2.48789	0.0739267	0.00256502	0.190914	0.0466761
chr6	24710781	24710879	3070640	0	-	0.530612	(0.515,0.57]	chr6	285352	15	INTRON	INTRON	C6orf62	ENSG00000112308.13	ENST00000378119.9:ENST00000378102.3	protein_coding	protein_coding	protein_coding	protein_coding	10	79	2	1.40421	2.006995	2.60978	0.0324924	0.00151689	0.145164	0.0352794
chr4	70940623	70940723	1970888	0	+	0.29	(0.28,0.32]	chr4	197571	377	INTRON	INTRON	MOB1B	ENSG00000173542.9	ENST00000502869.5:ENST00000509041.5:ENST00000309395.7:ENST00000396051.2:ENST00000511449.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	75	2	1.64429	2.00696	2.36963	0.0365539	0.0157022	0.153932	0.101453
chr3	45678556	45678655	1416955	0	+	0.545455	(0.515,0.57]	chr3	148646	16	UTR3	UTR3:EXON_MRNA	LIMD1	ENSG00000144791.10	ENST00000273317.5	protein_coding	protein_coding	protein_coding	protein_coding	5	44	2	1.75372	2.00692	2.26012	0.0386904	0.0160033	0.14279	0.109464
chr3	9454700	9454799	1359505	0	+	0.323232	(0.32,0.35]	chr3	142803	2	INTRON	INTRON	SETD5	ENSG00000168137.20	ENST00000402198.7:ENST00000682536.1:ENST00000663774.1:ENST00000665872.1:ENST00000666307.1:ENST00000693430.1:ENST00000691925.1:ENST00000684606.1:ENST00000691175.1:ENST00000443339.5:ENST00000406341.5:ENST00000670063.1:ENST00000684055.1:ENST00000407969.5:ENST00000493918.5:ENST00000399686.6:ENST00000413704.5:ENST00000691988.1:ENST00000466242.5:ENST00000682236.1:ENST00000488236.5:ENST00000421188.1:ENST00000478961.6:ENST00000476740.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	45	2	1.78201	2.0069150000000002	2.23182	0.068598	0.0365003	0.184298	0.153759
chr7	105300369	105300468	3603019	0	-	0.333333	(0.32,0.35]	chr7	336154	17	INTRON	INTRON	SRPK2	ENSG00000135250.17	ENST00000393651.8:ENST00000482897.5:ENST00000460391.5:ENST00000462282.5:ENST00000465112.5:ENST00000482862.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	45	2	1.78201	2.0069150000000002	2.23182	0.068598	0.0365003	0.184298	0.153759
chr1	205093380	205093479	622133	0	-	0.434343	(0.408,0.44]	chr1	73958	42	INTRON	INTRON	RBBP5	ENSG00000117222.14	ENST00000367164.1:ENST00000264515.11	protein_coding	protein_coding	protein_coding	protein_coding	7	71	2	1.96534	2.00688	2.04842	0.0216499	0.00797555	0.11491	0.0798772
chr4	39845001	39845101	2130836	0	-	0.46	(0.44,0.476]	chr4	210079	2	SS3_PROX	SS3_PROX:INTRON	PDS5A	ENSG00000121892.15	ENST00000303538.13:ENST00000507766.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	43	2	1.93084	2.006805	2.08277	0.0443175	0.0309998	0.162302	0.13151
chrX	74268681	74268780	7841365	0	-	0.444444	(0.44,0.476]	chrX	799728	63	INTRON	INTRON	FTX	ENSG00000230590.12	ENST00000603672.5:ENST00000430772.6:ENST00000602776.6:ENST00000638681.1:ENST00000652319.1:ENST00000661133.1:ENST00000652071.1:ENST00000602812.6:ENST00000651703.1:ENST00000653018.1:ENST00000658448.1:ENST00000662240.1:ENST00000652527.1:ENST00000651451.1:ENST00000657611.1:ENST00000660481.1:ENST00000659574.1:ENST00000661084.1:ENST00000662494.1:ENST00000670936.1:ENST00000602420.6:ENST00000658203.1:ENST00000638985.1:ENST00000691187.1:ENST00000603037.2:ENST00000687056.1:ENST00000654870.2:ENST00000652540.1:ENST00000652331.2:ENST00000652013.1:ENST00000657070.1:ENST00000665069.1:ENST00000651936.1:ENST00000652496.1:ENST00000653874.2:ENST00000661335.1:ENST00000664123.1:ENST00000658439.1:ENST00000666535.1:ENST00000652970.1:ENST00000423992.3:ENST00000665313.2:ENST00000651140.1:ENST00000660100.1:ENST00000693483.1:ENST00000656041.1:ENST00000657327.1:ENST00000664343.1:ENST00000656977.1:ENST00000671343.1:ENST00000659407.1:ENST00000671067.1:ENST00000660829.1:ENST00000671385.1	lncRNA	lncRNA	lncRNA	lncRNA	4	43	2	1.93084	2.006805	2.08277	0.0443175	0.0309998	0.162302	0.13151
chr1	19445234	19445334	388505	0	-	0.36	(0.35,0.378]	chr1	46387	251	INTRON	INTRON	CAPZB	ENSG00000077549.19	ENST00000264202.8:ENST00000264203.7:ENST00000375142.5:ENST00000482808.2:ENST00000674449.1:ENST00000674390.1:ENST00000375144.6:ENST00000674432.1:ENST00000433834.5:ENST00000459967.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	56	2	1.98929	2.0067649999999997	2.02424	0.0417909	0.0164934	0.147075	0.110301
chr14	104770161	104770250	5972587	0	-	0.606742	(0.57,1]	chr14	567751	7	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	AKT1	ENSG00000142208.18	ENST00000349310.7:ENST00000407796.7:ENST00000649815.2:ENST00000554581.5:ENST00000402615.6:ENST00000557552.1:ENST00000553506.5:ENST00000683722.1:ENST00000555528.5:ENST00000683058.1:ENST00000555458.5:ENST00000554826.2:ENST00000553797.2:ENST00000684058.1:ENST00000610370.2:ENST00000554192.5:ENST00000544168.5:ENST00000554585.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	27	2	1.98953	2.00672	2.02391	0.0339274	0.0182848	0.134508	0.115629
chr16	84985378	84985477	6533906	0	-	0.575758	(0.57,1]	chr16	633131	30	INTRON	INTRON	ZDHHC7	ENSG00000153786.13	ENST00000313732.9:ENST00000344861.9:ENST00000564466.5:ENST00000569488.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	27	2	1.98953	2.00672	2.02391	0.0339274	0.0182848	0.134508	0.115629
chr14	27652837	27652937	5849380	0	-	0.36	(0.35,0.378]	chr14	556260	3303	INTRON	INTRON	ENSG00000258932	ENSG00000258932.5	ENST00000553392.5:ENST00000554904.5:ENST00000556890.1:ENST00000555797.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	4	42	2	1.76773	2.00654	2.24535	0.0647516	0.0373863	0.179192	0.155878
chr5	138509409	138509503	2732319	0	-	0.361702	(0.35,0.378]	chr5	257369	2	INTRON	INTRON	ETF1	ENSG00000120705.13	ENST00000360541.10:ENST00000499810.6:ENST00000503014.5	protein_coding	protein_coding	protein_coding	protein_coding	4	42	2	1.76773	2.00654	2.24535	0.0647516	0.0373863	0.179192	0.155878
chr7	101986299	101986399	3368057	0	+	0.33	(0.32,0.35]	chr7	315233	263	INTRON	INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000497815.5:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000558469.5:ENST00000560541.5:ENST00000558836.5:ENST00000606749.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	69	2	1.42542	2.006475	2.58753	0.0718205	0.00560122	0.187046	0.0678837
chr5	32422995	32423094	2599111	0	-	0.40404	(0.378,0.408]	chr5	246966	25	INTRON	INTRON	ZFR	ENSG00000056097.16	ENST00000265069.13:ENST00000505366.1:ENST00000505204.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	75	2	1.70666	2.00647	2.30628	0.0163339	0.0140577	0.102916	0.101571
chrX	24781347	24781447	7632591	0	+	0.44	(0.408,0.44]	chrX	781731	56	INTRON	INTRON	POLA1	ENSG00000101868.13	ENST00000672178.1:ENST00000379068.8:ENST00000379059.7:ENST00000611764.2:ENST00000480125.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	62	2	1.83501	2.006425	2.17784	0.0323448	0.00916282	0.133003	0.0855292
chr7	123733719	123733819	3632508	0	-	0.44	(0.408,0.44]	chr7	337581	241	INTRON	INTRON	WASL	ENSG00000106299.8	ENST00000223023.5	protein_coding	protein_coding	protein_coding	protein_coding	6	50	2	1.49789	2.006405	2.51492	0.0390091	0.0329839	0.161009	0.133816
chr8	89757334	89757430	3985280	0	-	0.65625	(0.57,1]	chr8	365003	8	EXON_LNCRNA	EXON_LNCRNA	RIPK2-DT	ENSG00000251136.10	ENST00000688654.1:ENST00000690564.1:ENST00000661105.1:ENST00000685145.1:ENST00000519655.6:ENST00000656898.2:ENST00000685787.1:ENST00000693018.1:ENST00000691313.1:ENST00000691446.1:ENST00000524190.2:ENST00000691897.1:ENST00000685988.1:ENST00000691595.1:ENST00000688855.1:ENST00000504145.6:ENST00000685619.1:ENST00000653574.1:ENST00000687824.1:ENST00000521996.2:ENST00000692782.1:ENST00000655144.2:ENST00000687204.1:ENST00000689241.1:ENST00000686009.1:ENST00000685448.1:ENST00000688669.1:ENST00000686147.1:ENST00000523859.2:ENST00000693178.1:ENST00000689619.1:ENST00000686537.1:ENST00000691310.1:ENST00000691267.1:ENST00000685562.1:ENST00000691182.1:ENST00000690150.1:ENST00000685271.1:ENST00000692692.1:ENST00000686833.1:ENST00000691708.1	lncRNA	lncRNA	lncRNA	lncRNA	5	27	2	1.67986	2.006405	2.33295	0.0496395	0.0122896	0.174685	0.091087
chr12	108647102	108647202	5405914	0	-	0.28	[0,0.28]	chr12	515953	21	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CORO1C	ENSG00000110880.11	ENST00000261401.8:ENST00000420959.6:ENST00000541050.5:ENST00000546705.5:ENST00000549384.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	87	2	1.52461	2.00637	2.48813	0.0624132	0.00953591	0.175466	0.0863913
chr3	57571550	57571645	1706023	0	-	0.315789	(0.28,0.32]	chr3	175921	3	UTR3	UTR3:EXON_MRNA	ARF4	ENSG00000168374.11	ENST00000303436.11:ENST00000496292.5:ENST00000489843.1:ENST00000486310.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	92	2	1.6789	2.006355	2.33381	0.017572	0.0174951	0.11319	0.104863
chr15	74802806	74802903	6063441	0	+	0.28866000000000003	(0.28,0.32]	chr15	577363	4	UTR3	UTR3:EXON_MRNA	CSK	ENSG00000103653.17	ENST00000220003.14:ENST00000439220.6:ENST00000567571.5	protein_coding	protein_coding	protein_coding	protein_coding	8	91	2	1.4144	2.006285	2.59817	0.042942	0.00753816	0.162255	0.0748659
chrX	136870517	136870617	7897578	0	-	0.48	(0.476,0.515]	chrX	804142	1	SS3_PROX	SS3_PROX:INTRON	RBMX	ENSG00000147274.14	ENST00000561733.5:ENST00000431446.7:ENST00000496459.2:ENST00000568578.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	55	2	1.8388	2.006135	2.17347	0.0564473	0.010447	0.184423	0.0855102
chr8	23021010	23021108	3923452	0	-	0.44898	(0.44,0.476]	chr8	359060	10	UTR3	UTR3:EXON_MRNA	TNFRSF10B	ENSG00000120889.13	ENST00000276431.9:ENST00000523752.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	13	125	2	1.81246	2.006	2.19954	0.00516266	0.00305209	0.0651248	0.0493883
chr11	86021471	86021570	5014360	0	-	0.353535	(0.35,0.378]	chr11	472995	62	INTRON	INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000630913.2:ENST00000528398.5:ENST00000356360.9:ENST00000534412.5:ENST00000531771.5:ENST00000531558.1:ENST00000531930.5:ENST00000532041.5:ENST00000525162.5:ENST00000528256.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	15	147	2	1.7807	2.0059899999999997	2.23128	0.00502483	0.00359038	0.0619721	0.0551088
chr16	22496997	22497097	6322575	0	+	0.49	(0.476,0.515]	chr16	605439	48	INTRON	INTRON	NPIPB5	ENSG00000243716.11	ENST00000415654.5:ENST00000415833.6:ENST00000546168.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	98	2	1.69758	2.00591	2.31424	0.0144542	0.00308038	0.105087	0.0496438
chr11	119016039	119016139	5046412	0	-	0.49	(0.476,0.515]	chr11	475828	1	SS3_PROX	SS3_PROX:INTRON	RPS25	ENSG00000118181.11	ENST00000527791.5:ENST00000532567.5:ENST00000527673.2:ENST00000527853.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	60	2	1.75142	2.00588	2.26034	0.0259024	0.0166235	0.121522	0.110511
chr2	86158447	86158519	1170780	0	-	0.402778	(0.378,0.408]	chr2	124945	2	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	IMMT	ENSG00000132305.22	ENST00000449247.6:ENST00000254636.9:ENST00000410111.8:ENST00000442664.6:ENST00000419070.6:ENST00000409051.6:ENST00000474969.5:ENST00000490238.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	65	2	1.58349	2.00588	2.42827	0.0653091	0.00336942	0.180158	0.0532965
chr18	9923703	9923803	6873438	0	+	0.36	(0.35,0.378]	chr18	680866	75	INTRON	INTRON	VAPA	ENSG00000101558.14	ENST00000400000.7:ENST00000577901.5:ENST00000340541.4:ENST00000585042.5:ENST00000578314.1:ENST00000584796.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	111	2	1.57247	2.0058499999999997	2.43923	0.0350068	7.96688e-4	0.137535	0.0258804
chr7	128602417	128602517	3408073	0	+	0.49	(0.476,0.515]	chr7	318364	100	INTRON	INTRON	ENSG00000280828:ENSG00000242588	ENSG00000280828.1:ENSG00000242588.6	ENST00000479267.2:ENST00000605862.5	lncRNA	lncRNA	lncRNA:unprocessed_pseudogene	lncRNA:unprocessed_pseudogene	5	51	2	1.52615	2.00583	2.48551	0.0739267	0.00756632	0.190914	0.0773151
chr1	245892953	245893053	674553	0	-	0.31	(0.28,0.32]	chr1	79681	287	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000366517.5:ENST00000366516.5:ENST00000490107.6:ENST00000470510.5:ENST00000493441.5:ENST00000488153.5:ENST00000492487.5:ENST00000391836.3:ENST00000464398.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	66	2	1.71442	2.00575	2.29708	0.0454351	0.0195087	0.164236	0.109483
chr10	74182880	74182980	4456085	0	+	0.44	(0.408,0.44]	chr10	411534	56	INTRON	INTRON	ADK	ENSG00000156110.15	ENST00000672429.1:ENST00000539909.6:ENST00000286621.7:ENST00000478611.2:ENST00000673352.1:ENST00000673310.1:ENST00000672920.1:ENST00000672394.1:ENST00000372734.5:ENST00000673027.1:ENST00000541550.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	62	2	1.78881	2.005745	2.22268	0.0370259	0.00770925	0.139194	0.0784002
chr17	82853219	82853319	6695228	0	+	0.44	(0.408,0.44]	chr17	654911	67	INTRON	INTRON	TBCD	ENSG00000141556.22	ENST00000682479.1:ENST00000682722.1:ENST00000684464.1:ENST00000684544.1:ENST00000681983.1:ENST00000684361.1:ENST00000683184.1:ENST00000683282.1:ENST00000684408.1:ENST00000355528.9:ENST00000683444.1:ENST00000684776.1:ENST00000683041.1:ENST00000684760.1:ENST00000684349.1:ENST00000682213.1:ENST00000683009.1:ENST00000682921.1:ENST00000539345.6:ENST00000684000.1:ENST00000684188.1:ENST00000684429.1:ENST00000682610.1:ENST00000683821.1:ENST00000682654.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	62	2	1.78881	2.005745	2.22268	0.0370259	0.00770925	0.139194	0.0784002
chr10	125063522	125063622	4713364	0	-	0.39	(0.378,0.408]	chr10	434897	240	INTRON	INTRON	CTBP2	ENSG00000175029.17	ENST00000337195.9:ENST00000411419.6:ENST00000494626.6:ENST00000531469.5:ENST00000460976.5:ENST00000476817.1:ENST00000530884.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	85	2	1.9714	2.005705	2.04001	0.0109363	0.00996995	0.0924799	0.08427
chr11	881832	881931	4890174	0	-	0.525253	(0.515,0.57]	chr11	457979	66	INTRON	INTRON	CHID1	ENSG00000177830.18	ENST00000323578.13:ENST00000449825.5:ENST00000454838.6:ENST00000529539.5:ENST00000534207.5:ENST00000429789.6:ENST00000528581.5:ENST00000436108.6:ENST00000528521.1:ENST00000526714.5:ENST00000528534.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	63	2	1.88259	2.005705	2.12882	0.0251849	0.005888	0.133519	0.0670089
chr14	21509646	21509738	5836635	0	-	0.48913	(0.476,0.515]	chr14	554876	2	INTRON	INTRON	METTL3	ENSG00000165819.12	ENST00000298717.9:ENST00000537163.5:ENST00000543235.5:ENST00000544248.1:ENST00000536201.5:ENST00000542054.5:ENST00000538267.5:ENST00000367606.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	51	2	1.69138	2.0056950000000002	2.32001	0.0481165	0.0136217	0.153019	0.101682
chr4	70944172	70944271	1970924	0	+	0.494949	(0.476,0.515]	chr4	197577	9	INTRON	INTRON	MOB1B	ENSG00000173542.9	ENST00000502869.5:ENST00000509041.5:ENST00000309395.7:ENST00000396051.2:ENST00000511449.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	65	2	1.69413	2.0056950000000002	2.31726	0.0200655	0.015077	0.121043	0.0994339
chr2	47837478	47837576	1115426	0	-	0.397959	(0.378,0.408]	chr2	119668	11	INTRON	INTRON	FBXO11	ENSG00000138081.22	ENST00000684712.1:ENST00000682451.1:ENST00000403359.8:ENST00000402508.5:ENST00000683894.1:ENST00000681999.1:ENST00000682975.1:ENST00000684085.1:ENST00000492225.5:ENST00000424163.2:ENST00000480038.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	52	2	1.54765	2.00569	2.46373	0.0382831	0.0334147	0.146709	0.141795
chr2	131566631	131566729	867451	0	+	0.397959	(0.378,0.408]	chr2	97472	19	EXON_LNCRNA	EXON_LNCRNA	ENSG00000286208	ENSG00000286208.1	ENST00000652012.1	lncRNA	lncRNA	lncRNA	lncRNA	6	61	2	1.84831	2.00567	2.16303	0.0252473	0.0172621	0.12011	0.111749
chr19	15301944	15302044	7147100	0	-	0.48	(0.476,0.515]	chr19	721965	216	INTRON	INTRON	BRD4	ENSG00000141867.19	ENST00000679869.1:ENST00000360016.9:ENST00000594841.5:ENST00000597315.5:ENST00000601941.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	73	2	1.63838	2.005665	2.37295	0.0555021	0.00193884	0.165463	0.0409025
chr21	10444142	10444241	7368436	0	+	0.393939	(0.378,0.408]	chr21	751975	289	INTRON	INTRON	BAGE2	ENSG00000187172.15	ENST00000474011.5:ENST00000470054.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	10	102	2	1.85968	2.00564	2.1516	0.0075228099999999996	0.0065185	0.0773151	0.0699952
chr13	19700379	19700476	5552110	0	-	0.268041	[0,0.28]	chr13	530678	6	INTRON	INTRON	PSPC1	ENSG00000121390.19	ENST00000471658.5:ENST00000492741.5:ENST00000635562.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	4	62	2	1.85666	2.005615	2.15457	0.0660997	0.0269306	0.181924	0.135288
chr9	5000597	5000697	4095976	0	+	0.27	[0,0.28]	chr9	373235	142	INTRON	INTRON	JAK2	ENSG00000096968.14	ENST00000636127.1:ENST00000476574.5:ENST00000381652.4	protein_coding	protein_coding	protein_coding	protein_coding	4	62	2	1.85666	2.005615	2.15457	0.0660997	0.0269306	0.181924	0.135288
chr11	86002772	86002865	5014165	0	-	0.462366	(0.44,0.476]	chr11	472964	13	INTRON	INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000630913.2:ENST00000528398.5:ENST00000356360.9:ENST00000534412.5:ENST00000533350.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	38	2	1.62896	2.005575	2.38219	0.0546679	0.045456	0.182674	0.149888
chr15	58675144	58675244	6192762	0	-	0.47	(0.44,0.476]	chr15	589951	96	INTRON	INTRON	ADAM10	ENSG00000137845.15	ENST00000260408.8:ENST00000402627.5:ENST00000561288.1:ENST00000396136.6:ENST00000559053.1:ENST00000558733.5:ENST00000439637.5:ENST00000497846.5:ENST00000558004.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	38	2	1.62896	2.005575	2.38219	0.0546679	0.045456	0.182674	0.149888
chr1	149939892	149939991	549681	0	-	0.444444	(0.44,0.476]	chr1	64566	22	UTR3	UTR3:EXON_MRNA	OTUD7B	ENSG00000264522.6	ENST00000581312.6	protein_coding	protein_coding	protein_coding	protein_coding	5	51	2	1.92837	2.00557	2.08277	0.0309998	0.0222222	0.13151	0.124303
chr8	140568221	140568321	4075888	0	-	0.47	(0.44,0.476]	chr8	370265	52	INTRON	INTRON	AGO2	ENSG00000123908.12	ENST00000220592.10:ENST00000519980.5:ENST00000523609.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	51	2	1.87325	2.0055199999999997	2.13779	0.0265709	0.0264596	0.134088	0.122506
chr3	196064108	196064208	1897362	0	-	0.38	(0.378,0.408]	chr3	189930	4	SS5_PROX	SS5_PROX:INTRON	TFRC	ENSG00000072274.13	ENST00000420415.5:ENST00000360110.9:ENST00000392396.7:ENST00000464368.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	20	211	2	1.61318	2.005485	2.39779	0.0152775	7.88932e-5	0.0999282	0.00739361
chr1	223971894	223971993	643592	0	-	0.383838	(0.378,0.408]	chr1	75994	93	INTRON	INTRON	GTF2IP20	ENSG00000272645.4	ENST00000634905.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	6	61	2	1.6165	2.00547	2.39444	0.0374185	0.0122858	0.155878	0.091087
chr15	58053027	58053127	6187415	0	-	0.39	(0.378,0.408]	chr15	589786	146	INTRON	INTRON	ALDH1A2	ENSG00000128918.15	ENST00000537372.5:ENST00000249750.9:ENST00000347587.7:ENST00000430119.6:ENST00000558231.5:ENST00000558595.5:ENST00000558239.5:ENST00000557967.5:ENST00000558073.5:ENST00000559297.5:ENST00000560122.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	61	2	1.6165	2.00547	2.39444	0.0374185	0.0122858	0.155878	0.091087
chr3	185935824	185935924	1886582	0	-	0.32	(0.28,0.32]	chr3	188644	15	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	TRA2B	ENSG00000136527.19	ENST00000453386.7:ENST00000487615.5:ENST00000456380.5:ENST00000382191.4:ENST00000465245.1:ENST00000485530.5:ENST00000471134.1:ENST00000480461.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	16	209	2	1.62903	2.00546	2.38189	0.0114994	0.00104577	0.0958308	0.0294539
chr7	72904582	72904682	3330044	0	+	0.44	(0.408,0.44]	chr7	309565	131	INTRON	INTRON	POM121	ENSG00000196313.13	ENST00000627934.3:ENST00000395270.5	protein_coding	protein_coding	protein_coding	protein_coding	6	60	2	1.43792	2.0054350000000003	2.57295	0.062843	0.00640423	0.196433	0.0694534
chr18	11853763	11853860	6874233	0	+	0.463918	(0.44,0.476]	chr18	681005	18	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	CHMP1B	ENSG00000255112.3	ENST00000526991.3:ENST00000588284.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	71	2	1.83459	2.005395	2.1762	0.0198542	0.0092251	0.109608	0.0855292
chr12	132992356	132992456	5252154	0	+	0.33	(0.32,0.35]	chr12	499627	42	INTRON	INTRON	ZNF26	ENSG00000198393.8	ENST00000537956.1:ENST00000328654.10:ENST00000545101.1:ENST00000540238.5:ENST00000544181.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	50	2	1.99307	2.005375	2.01768	0.04271	0.0361337	0.152563	0.148082
chr7	111251800	111251900	3621000	0	-	0.44	(0.408,0.44]	chr7	337093	2879	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	86	2	1.71289	2.00533	2.29777	0.0135449	0.0067764	0.101363	0.0711802
chr1	155268992	155269091	560344	0	-	0.525253	(0.515,0.57]	chr1	66869	3	EXON_LNCRNA	EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CLK2	ENSG00000176444.19	ENST00000368361.9:ENST00000361168.9:ENST00000355560.4:ENST00000476983.5:ENST00000497188.1:ENST00000471047.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	37	2	1.86007	2.00529	2.15051	0.0526611	0.0238113	0.178401	0.118889
chr12	111581265	111581365	5413052	0	-	0.54	(0.515,0.57]	chr12	516941	165	INTRON	INTRON	ATXN2	ENSG00000204842.18	ENST00000642389.2:ENST00000608853.5:ENST00000672613.1:ENST00000673436.1:ENST00000643669.2:ENST00000616825.4:ENST00000389153.10:ENST00000550104.5:ENST00000483311.6:ENST00000672335.1:ENST00000673557.1:ENST00000673283.1:ENST00000673449.1:ENST00000535949.5:ENST00000542287.6:ENST00000644883.1:ENST00000647305.1:ENST00000671792.1:ENST00000392645.6:ENST00000672105.1:ENST00000549455.1:ENST00000548492.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	37	2	1.86007	2.00529	2.15051	0.0526611	0.0238113	0.178401	0.118889
chr15	76246746	76246846	6227686	0	-	0.56	(0.515,0.57]	chr15	594907	11	INTRON	INTRON	ETFA	ENSG00000140374.17	ENST00000690610.1:ENST00000557943.6:ENST00000692691.1:ENST00000688389.1:ENST00000687293.1:ENST00000691695.1:ENST00000685863.1:ENST00000689730.1:ENST00000687975.1:ENST00000693064.1:ENST00000688908.1:ENST00000691021.1:ENST00000433983.6:ENST00000267950.12:ENST00000685548.1:ENST00000565910.6:ENST00000688154.1:ENST00000560595.6:ENST00000560726.5:ENST00000559602.5:ENST00000560044.6:ENST00000559973.5:ENST00000559386.2:ENST00000560899.5:ENST00000685118.1:ENST00000688637.1:ENST00000559075.5:ENST00000689739.1:ENST00000691071.1:ENST00000560816.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	37	2	1.86007	2.00529	2.15051	0.0526611	0.0238113	0.178401	0.118889
chr16	23838304	23838404	6323781	0	+	0.54	(0.515,0.57]	chr16	605693	5	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000498058.1:ENST00000645517.1:ENST00000498739.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	37	2	1.86007	2.00529	2.15051	0.0526611	0.0238113	0.178401	0.118889
chr4	994225	994325	1908812	0	+	0.54	(0.515,0.57]	chr4	191367	16	INTRON	INTRON	IDUA	ENSG00000127415.13	ENST00000247933.9:ENST00000514224.2:ENST00000514698.5:ENST00000502910.5:ENST00000508168.5:ENST00000506561.5:ENST00000504568.5:ENST00000514192.5:ENST00000509948.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	37	2	1.86007	2.00529	2.15051	0.0526611	0.0238113	0.178401	0.118889
chr1	77955550	77955643	494275	0	-	0.322581	(0.32,0.35]	chr1	58492	2	SS3_PROX	SS3_PROX:INTRON	FUBP1	ENSG00000162613.17	ENST00000370768.7:ENST00000294623.8:ENST00000370767.5:ENST00000470287.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	51	2	1.49965	2.00513	2.51061	0.0542985	0.0364463	0.182243	0.138959
chr10	119580846	119580946	4705864	0	-	0.33	(0.32,0.35]	chr10	434212	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	TIAL1	ENSG00000151923.18	ENST00000369093.6:ENST00000436547.7:ENST00000489822.5:ENST00000497671.5:ENST00000470781.5:ENST00000470635.1:ENST00000412524.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	51	2	1.49965	2.00513	2.51061	0.0542985	0.0364463	0.182243	0.138959
chr14	21253846	21253946	5835010	0	-	0.46	(0.44,0.476]	chr14	554459	170	INTRON	INTRON	HNRNPC	ENSG00000092199.19	ENST00000336053.10:ENST00000553300.6:ENST00000554969.5:ENST00000556142.5:ENST00000554455.5:ENST00000430246.6:ENST00000553753.5:ENST00000555309.5:ENST00000555914.5:ENST00000557442.5:ENST00000556628.5:ENST00000556513.5:ENST00000555883.5:ENST00000557201.5:ENST00000556897.5:ENST00000420743.6:ENST00000554539.5:ENST00000554383.5:ENST00000555215.5:ENST00000555137.5:ENST00000554891.5:ENST00000556226.5:ENST00000555176.5:ENST00000553614.5:ENST00000557336.1:ENST00000557768.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	24	235	2	1.63214	2.00512	2.3781	0.00462435	2.40063e-4	0.062717	0.0142303
chr1	29155410	29155508	410171	0	-	0.27551	[0,0.28]	chr1	49392	1	INTRON	INTRON	SRSF4	ENSG00000116350.18	ENST00000373795.7:ENST00000691479.1:ENST00000634348.1:ENST00000466448.4:ENST00000622143.1:ENST00000497015.5:ENST00000605204.1:ENST00000477193.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	104	2	1.58141	2.0050600000000003	2.42871	0.0540605	0.00461175	0.164565	0.0626113
chr1	167965928	167966028	248782	0	+	0.42	(0.408,0.44]	chr1	29542	137	INTRON	INTRON	DCAF6	ENSG00000143164.16	ENST00000450548.5:ENST00000470919.5:ENST00000432587.6:ENST00000367843.7:ENST00000470721.5:ENST00000367840.4:ENST00000312263.10:ENST00000455334.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	59	2	1.60344	2.005025	2.40661	0.0387506	0.011475	0.160156	0.0888882
chr5	139626055	139626155	2501160	0	+	0.44	(0.408,0.44]	chr5	239054	22	INTRON	INTRON	UBE2D2	ENSG00000131508.16	ENST00000511725.5:ENST00000398733.8:ENST00000398734.8:ENST00000505548.5:ENST00000253815.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	59	2	1.60344	2.005025	2.40661	0.0387506	0.011475	0.160156	0.0888882
chr7	127382585	127382685	3634143	0	-	0.45	(0.44,0.476]	chr7	337767	49	INTRON	INTRON	ZNF800	ENSG00000048405.11	ENST00000265827.8:ENST00000393313.5:ENST00000393312.5:ENST00000434602.5:ENST00000436992.5:ENST00000439506.1	protein_coding	protein_coding	protein_coding	protein_coding	5	44	2	1.54868	2.005015	2.46135	0.0457575	0.0374637	0.164677	0.140008
chr7	151501466	151501566	3674741	0	-	0.46	(0.44,0.476]	chr7	341207	29	INTRON	INTRON	RHEB	ENSG00000106615.10	ENST00000262187.10:ENST00000472642.5:ENST00000478470.5:ENST00000496004.5:ENST00000470370.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	44	2	1.54868	2.005015	2.46135	0.0457575	0.0374637	0.164677	0.140008
chr16	85476899	85476999	6414599	0	+	0.42	(0.408,0.44]	chr16	615465	1176	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	12	114	2	1.66061	2.005005	2.3494	0.0102709	0.00462504	0.0850389	0.062717
chr6	17701985	17702085	3066165	0	-	0.43	(0.408,0.44]	chr6	284872	130	INTRON	INTRON	NUP153	ENSG00000124789.12	ENST00000613258.4:ENST00000537253.5:ENST00000262077.3	protein_coding	protein_coding	protein_coding	protein_coding	4	43	2	2.00228	2.0049799999999998	2.00768	0.0389732	0.035843	0.152216	0.143072
chr2	130131582	130131680	863588	0	+	0.377551	(0.35,0.378]	chr2	96903	14	INTRON	INTRON	MED15P9	ENSG00000223760.4	ENST00000427638.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	5	56	2	1.56287	2.00494	2.44701	0.0697648	0.00900997	0.184298	0.0851009
chr5	139294716	139294809	2499389	0	+	0.526882	(0.515,0.57]	chr5	238908	3	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	MATR3	ENSG00000280987.4:ENSG00000015479.20	ENST00000509990.5:ENST00000506147.5:ENST00000512107.5:ENST00000361059.7:ENST00000394800.6:ENST00000502929.5:ENST00000504203.5:ENST00000514694.5:ENST00000509644.5:ENST00000505016.2:ENST00000502394.1:ENST00000512876.5:ENST00000513678.5:ENST00000513121.1:ENST00000504045.5:ENST00000504311.5:ENST00000502499.5:ENST00000510056.5:ENST00000511249.5:ENST00000394805.8:ENST00000507860.1:ENST00000509918.5:ENST00000503811.5:ENST00000511978.5:ENST00000618441.5:ENST00000508689.1:ENST00000514528.5:ENST00000504643.5:ENST00000514488.1:ENST00000503340.1:ENST00000504023.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	9	66	2	1.52078	2.0049	2.48902	0.0211248	0.00760558	0.122921	0.0749571
chr19	45855807	45855906	7193791	0	-	0.494949	(0.476,0.515]	chr19	728658	1	INTRON	INTRON	SYMPK	ENSG00000125755.19	ENST00000245934.12:ENST00000593504.5:ENST00000599460.5:ENST00000598896.5:ENST00000602061.5:ENST00000598059.5:ENST00000594293.5:ENST00000593959.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	94	2	1.82798	2.004885	2.18179	0.0184548	0.00322689	0.116598	0.0507087
chr16	58553088	58553184	6495587	0	-	0.458333	(0.44,0.476]	chr16	628522	9	INTRON	INTRON	CNOT1	ENSG00000125107.19	ENST00000317147.10:ENST00000569240.5:ENST00000567188.5:ENST00000441024.6:ENST00000569732.1:ENST00000562046.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	59	2	1.71119	2.004805	2.29842	0.0552483	0.0136438	0.165463	0.101813
chr7	157221172	157221271	3454782	0	+	0.343434	(0.32,0.35]	chr7	322986	5	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	UBE3C	ENSG00000009335.18	ENST00000348165.10:ENST00000470408.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	11	124	2	1.78925	2.004565	2.21988	0.0082586	0.00573083	0.0813266	0.0657377
chr2	169571160	169571239	1261674	0	-	0.379747	(0.378,0.408]	chr2	133678	3	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	FASTKD1	ENSG00000138399.18	ENST00000453153.7:ENST00000453929.6:ENST00000445210.1:ENST00000438035.5:ENST00000417376.5	protein_coding	protein_coding	protein_coding	protein_coding	15	151	2	1.99288	2.00455	2.01622	0.00540773	0.00151166	0.0644789	0.0360297
chr1	173488148	173488243	255627	0	+	0.368421	(0.35,0.378]	chr1	30516	4	UTR3	UTR3:EXON_MRNA	PRDX6	ENSG00000117592.9	ENST00000340385.6	protein_coding	protein_coding	protein_coding	protein_coding	15	158	2	1.34308	2.004455	2.66583	0.0274048	4.03436e-4	0.136498	0.0185763
chr18	21593398	21593488	6955042	0	-	0.611111	(0.57,1]	chr18	688029	5	EXON_LNCRNA	EXON_LNCRNA:INTRON	ESCO1	ENSG00000141446.11	ENST00000269214.10:ENST00000383276.1:ENST00000580101.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	27	2	1.52865	2.00429	2.47993	0.0730445	0.007207	0.189414	0.0756278
chr4	770697	770796	2093305	0	-	0.353535	(0.35,0.378]	chr4	206823	27	INTRON	INTRON	ENSG00000249592	ENSG00000249592.7	ENST00000660016.1:ENST00000665579.1:ENST00000503571.5:ENST00000652800.1:ENST00000507446.1	lncRNA	lncRNA	lncRNA	lncRNA	13	138	2	1.97395	2.0042750000000003	2.0346	0.00872531	0.00190202	0.0788605	0.0403216
chrX	13714111	13714209	7764092	0	-	0.295918	(0.28,0.32]	chrX	793545	20	UTR3	UTR3:EXON_MRNA	TRAPPC2	ENSG00000196459.15	ENST00000359680.9:ENST00000380579.6:ENST00000683983.1:ENST00000683569.1:ENST00000458511.7:ENST00000518847.2	protein_coding	protein_coding	protein_coding	protein_coding	12	152	2	1.72383	2.004265	2.2847	0.0152533	0.00208314	0.0997777	0.0424653
chr3	185931952	185932052	1886543	0	-	0.27	[0,0.28]	chr3	188640	1	SS3_PROX	SS3_PROX:INTRON	TRA2B	ENSG00000136527.19	ENST00000453386.7:ENST00000487615.5:ENST00000456380.5:ENST00000382191.4:ENST00000465245.1:ENST00000485530.5:ENST00000471134.1:ENST00000480461.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	79	2	2.00184	2.004165	2.00649	0.040391	0.0255167	0.161534	0.120269
chr6	57107736	57107835	2878235	0	+	0.30303	(0.28,0.32]	chr6	273248	58	UTR3	UTR3:EXON_MRNA:INTRON	ZNF451	ENSG00000112200.17	ENST00000515290.5:ENST00000510483.5:ENST00000357489.7:ENST00000370708.8:ENST00000370702.5:ENST00000444273.6:ENST00000370711.9:ENST00000370706.9:ENST00000491832.6:ENST00000502749.1:ENST00000504603.1:ENST00000509071.5:ENST00000509251.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	75	2	1.86825	2.0041349999999998	2.14002	0.0304107	0.017708	0.130461	0.11319
chr7	100631945	100632002	3587242	0	-	0.596491	(0.57,1]	chr7	334526	1	EXON_MRNA	EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TFR2	ENSG00000106327.13	ENST00000431692.5:ENST00000462107.1:ENST00000223051.8:ENST00000465294.5:ENST00000490084.5:ENST00000462090.5:ENST00000476304.5:ENST00000473374.5:ENST00000473963.1:ENST00000473571.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	25	2	1.64415	2.00413	2.36411	0.0408868	0.0342575	0.161534	0.135558
chr1	26278523	26278618	49944	0	+	0.442105	(0.44,0.476]	chr1	6267	14	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	CEP85	ENSG00000130695.16	ENST00000451429.8:ENST00000252992.8:ENST00000453146.1:ENST00000469609.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	14	133	2	1.92467	2.004115	2.08356	0.00502853	0.00235565	0.0619934	0.0445407
chr13	102617051	102617151	5532192	0	+	0.48	(0.476,0.515]	chr13	528652	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	TPP2	ENSG00000134900.12	ENST00000376052.5:ENST00000651448.1:ENST00000376065.8:ENST00000652308.1:ENST00000651544.1:ENST00000651748.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	32	2	1.72558	2.00411	2.28264	0.0767648	0.0534132	0.196164	0.179876
chr15	64593633	64593733	6045420	0	+	0.48	(0.476,0.515]	chr15	575696	907	INTRON	INTRON	ZNF609	ENSG00000180357.10	ENST00000326648.5:ENST00000558680.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	32	2	1.72558	2.00411	2.28264	0.0767648	0.0534132	0.196164	0.179876
chr22	20520877	20520976	7479481	0	+	0.494949	(0.476,0.515]	chr22	762957	15	INTRON	INTRON	MED15	ENSG00000099917.17	ENST00000445987.5:ENST00000444094.5:ENST00000414658.5:ENST00000486656.5:ENST00000433831.5:ENST00000432052.5:ENST00000292733.11:ENST00000263205.11:ENST00000477824.5:ENST00000406969.5:ENST00000382974.6:ENST00000441501.5:ENST00000438962.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	32	2	1.72558	2.00411	2.28264	0.0767648	0.0534132	0.196164	0.179876
chr9	7079456	7079556	4103400	0	+	0.48	(0.476,0.515]	chr9	373779	23	INTRON	INTRON	KDM4C	ENSG00000107077.19	ENST00000381306.7:ENST00000381309.8:ENST00000428870.6:ENST00000420847.2:ENST00000495890.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	32	2	1.72558	2.00411	2.28264	0.0767648	0.0534132	0.196164	0.179876
chr15	90213141	90213240	6098219	0	+	0.393939	(0.378,0.408]	chr15	580425	63	INTRON	INTRON	SEMA4B	ENSG00000185033.15	ENST00000559322.5:ENST00000559300.5:ENST00000561085.1:ENST00000332496.10:ENST00000558895.5:ENST00000559792.5:ENST00000411539.7:ENST00000560089.5:ENST00000558051.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	45	2	1.89621	2.0040750000000003	2.11194	0.0488044	0.0292534	0.173377	0.128055
chr7	1498011	1498111	3462617	0	-	0.4	(0.378,0.408]	chr7	323898	2	SS5_PROX	SS5_PROX:INTRON	INTS1	ENSG00000164880.16	ENST00000404767.8	protein_coding	protein_coding	protein_coding	protein_coding	4	45	2	1.89621	2.0040750000000003	2.11194	0.0488044	0.0292534	0.173377	0.128055
chr20	34098206	34098301	7329488	0	-	0.4	(0.378,0.408]	chr20	746516	3	SS5_PROX	SS5_PROX:INTRON	EIF2S2	ENSG00000125977.7	ENST00000374980.3	protein_coding	protein_coding	protein_coding	protein_coding	6	63	2	1.88729	2.004	2.12071	0.0532327	0.00601933	0.162538	0.0700813
chr3	198212804	198212902	1600295	0	+	0.520408	(0.515,0.57]	chr3	165920	6	INTRON	INTRON	FAM157A	ENSG00000236438.7	ENST00000634862.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	5	44	2	1.9459	2.00398	2.06206	0.0429089	0.0135396	0.148082	0.101363
chr7	100126806	100126906	3585616	0	-	0.59	(0.57,1]	chr7	334241	4	SS5_PROX	SS5_PROX:INTRON	ENSG00000242798	ENSG00000242798.1	ENST00000494221.1	lncRNA	lncRNA	lncRNA	lncRNA	5	27	2	1.83769	2.003975	2.17026	0.0297587	0.0220522	0.12908	0.123836
chrX	113828399	113828499	7866323	0	-	0.6	(0.57,1]	chrX	801544	2122	EXON_LNCRNA	EXON_LNCRNA:INTRON	XACT	ENSG00000241743.4	ENST00000468762.3:ENST00000674361.1	lncRNA	lncRNA	lncRNA	lncRNA	5	27	2	1.83769	2.003975	2.17026	0.0297587	0.0220522	0.12908	0.123836
chr2	65096071	65096171	1142621	0	-	0.54	(0.515,0.57]	chr2	122174	46	INTRON	INTRON	RAB1A	ENSG00000138069.18	ENST00000649427.1:ENST00000494188.1:ENST00000409784.8:ENST00000409892.5:ENST00000409751.1:ENST00000398529.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	56	2	1.73535	2.0038650000000002	2.27238	0.0165373	0.0161808	0.110511	0.101453
chrX	73845330	73845430	7837977	0	-	0.48	(0.476,0.515]	chrX	799611	80	EXON_LNCRNA	EXON_LNCRNA:INTRON	XIST	ENSG00000229807.13	ENST00000650627.1:ENST00000434839.3:ENST00000429829.6:ENST00000650366.1:ENST00000650186.1:ENST00000635841.2:ENST00000650637.1:ENST00000648970.1	lncRNA	lncRNA	lncRNA	lncRNA	12	119	2	1.78749	2.0038549999999997	2.22022	0.0157618	9.15633e-4	0.101453	0.027822
chr9	112130830	112130929	4316332	0	-	0.454545	(0.44,0.476]	chr9	396964	60	INTRON	INTRON	SUSD1	ENSG00000106868.17	ENST00000374270.8:ENST00000374263.7:ENST00000355396.7:ENST00000374264.6:ENST00000415074.1:ENST00000532348.1:ENST00000482851.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	40	2	1.61163	2.003835	2.39604	0.0598319	0.0404291	0.169278	0.161534
chr11	66641484	66641582	4811058	0	+	0.44898	(0.44,0.476]	chr11	447893	4	INTRON	INTRON	RBM14-RBM4:RBM4	ENSG00000248643.5:ENSG00000173933.21	ENST00000412278.2:ENST00000421355.1:ENST00000500635.2:ENST00000396053.9:ENST00000408993.6:ENST00000578778.5:ENST00000398692.8:ENST00000310092.12:ENST00000510173.6:ENST00000528039.5:ENST00000506523.6:ENST00000530235.1:ENST00000409406.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	11	98	2	1.50031	2.003825	2.50734	0.0195301	0.00288299	0.120063	0.0475859
chr12	110501316	110501416	5409977	0	-	0.4	(0.378,0.408]	chr12	516596	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	VPS29	ENSG00000111237.19	ENST00000549578.6:ENST00000360579.11:ENST00000621131.4:ENST00000447578.6:ENST00000546588.1:ENST00000549970.5:ENST00000548259.1:ENST00000553128.5:ENST00000551655.1:ENST00000550267.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	82	2	1.98888	2.003695	2.01851	0.0205239	0.00559022	0.110999	0.0678837
chr16	16657139	16657238	6312437	0	+	0.424242	(0.408,0.44]	chr16	604112	83	INTRON	INTRON	ENSG00000260126	ENSG00000260126.2	ENST00000567465.2	lncRNA	lncRNA	lncRNA	lncRNA	9	80	2	1.35901	2.00365	2.64829	0.0428833	0.00400062	0.148082	0.057767
chr17	57471294	57471394	6634909	0	+	0.52	(0.515,0.57]	chr17	648057	262	INTRON	INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000674961.1:ENST00000582453.5:ENST00000675656.1:ENST00000322684.7:ENST00000442934.6:ENST00000579180.2:ENST00000579205.5:ENST00000579505.5:ENST00000582772.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	44	2	1.67758	2.003625	2.32967	0.0471728	0.0133671	0.168737	0.0946278
chr2	113920189	113920288	854548	0	+	0.484848	(0.476,0.515]	chr2	95910	28	INTRON	INTRON	ACTR3	ENSG00000115091.12	ENST00000443297.5:ENST00000263238.7:ENST00000415792.5:ENST00000446821.5:ENST00000535589.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	66	2	1.84346	2.003615	2.16377	0.0243026	0.0114152	0.12011	0.095586
chr10	63376433	63376533	4634495	0	-	0.36	(0.35,0.378]	chr10	426230	30	INTRON	INTRON	JMJD1C	ENSG00000171988.20	ENST00000399262.7:ENST00000633035.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	57	2	1.83633	2.0035600000000002	2.17079	0.0335602	0.0225978	0.134145	0.124921
chr20	32789809	32789909	7256938	0	+	0.58	(0.57,1]	chr20	737157	4	INTRON	INTRON	DNMT3B	ENSG00000088305.19	ENST00000696232.1:ENST00000328111.6:ENST00000696231.1:ENST00000348286.6:ENST00000353855.6:ENST00000696233.1:ENST00000443239.7:ENST00000696234.1:ENST00000696235.1:ENST00000456297.6:ENST00000696236.1:ENST00000201963.3:ENST00000696238.1:ENST00000696239.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	32	2	1.92756	2.00356	2.07956	0.0220439	0.013114	0.115395	0.0998629
chr16	28153909	28153998	6467875	0	-	0.449438	(0.44,0.476]	chr16	624543	6	INTRON	INTRON	XPO6	ENSG00000169180.12	ENST00000304658.10:ENST00000565698.5:ENST00000564337.5:ENST00000566175.1:ENST00000574435.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	51	2	1.98146	2.00352	2.02558	0.0363567	0.0186013	0.138959	0.117264
chr7	65975363	65975461	3538155	0	-	0.459184	(0.44,0.476]	chr7	330015	4	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	GUSB	ENSG00000169919.17	ENST00000304895.9:ENST00000466883.5:ENST00000430730.5:ENST00000447929.5:ENST00000421103.5:ENST00000465785.5:ENST00000479038.1:ENST00000475316.5:ENST00000476486.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	51	2	1.81595	2.003365	2.19078	0.0317953	0.0226089	0.14477	0.117489
chr1	155914413	155914507	564641	0	-	0.446809	(0.44,0.476]	chr1	67438	2	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	KHDC4	ENSG00000132680.11	ENST00000368321.8:ENST00000368320.7:ENST00000478002.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	16	156	2	1.88371	2.00331	2.12291	0.00600541	8.18714e-4	0.0674604	0.0261556
chr19	51582677	51582776	7093670	0	+	0.323232	(0.32,0.35]	chr19	711048	4	INTRON	INTRON	ZNF175	ENSG00000105497.8	ENST00000262259.7:ENST00000436511.2:ENST00000600460.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	60	2	1.78201	2.0031499999999998	2.22429	0.0365003	0.0226421	0.153759	0.117557
chr11	66628746	66628845	4810924	0	+	0.434343	(0.408,0.44]	chr11	447878	22	UTR3	UTR3:EXON_MRNA:INTRON	RBM14-RBM4:RBM14	ENSG00000248643.5:ENSG00000239306.5	ENST00000412278.2:ENST00000511114.1:ENST00000310137.5:ENST00000421355.1:ENST00000500635.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	12	120	2	1.33029	2.003115	2.67594	0.0469419	1.93157e-4	0.151917	0.012131
chr1	28939458	28939558	59205	0	+	0.55	(0.515,0.57]	chr1	7621	243	INTRON	INTRON	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000647918.1:ENST00000646800.1:ENST00000644342.1:ENST00000646189.1:ENST00000482464.6:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000646260.1:ENST00000373798.5:ENST00000644600.1:ENST00000649674.1:ENST00000643173.1:ENST00000343067.9:ENST00000644780.1:ENST00000650265.1:ENST00000648181.1:ENST00000643604.1:ENST00000648891.1:ENST00000373797.2:ENST00000349460.9:ENST00000645184.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	51	2	1.9888	2.003085	2.01737	0.0352218	0.00963364	0.137535	0.086971
chr7	119724844	119724944	3628586	0	-	0.43	(0.408,0.44]	chr7	337319	195	INTRON	INTRON	LINC02476	ENSG00000225546.6	ENST00000660268.1:ENST00000431071.5	lncRNA	lncRNA	lncRNA	lncRNA	9	77	2	1.24904	2.003055	2.75707	0.055886	0.00317496	0.18407	0.0503542
chr17	28641251	28641319	6745130	0	-	0.397059	(0.378,0.408]	chr17	662670	2	INTRON	INTRON	KIAA0100	ENSG00000007202.15	ENST00000528896.7:ENST00000544884.5:ENST00000389003.7:ENST00000580882.5:ENST00000581267.1:ENST00000577417.5:ENST00000583403.5:ENST00000577580.1:ENST00000579253.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	40	2	1.78011	2.003005	2.2259	0.0662381	0.0356367	0.181924	0.151629
chrX	44904485	44904585	7648915	0	+	0.39	(0.378,0.408]	chrX	782726	301	INTRON	INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000675440.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000621147.5:ENST00000475233.1:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	40	2	1.78011	2.003005	2.2259	0.0662381	0.0356367	0.181924	0.151629
chr6	17642231	17642329	3065552	0	-	0.295918	(0.28,0.32]	chr6	284800	18	INTRON	INTRON	NUP153	ENSG00000124789.12	ENST00000613258.4:ENST00000537253.5:ENST00000262077.3	protein_coding	protein_coding	protein_coding	protein_coding	8	91	2	1.56729	2.002995	2.4387	0.0260617	0.0126802	0.133676	0.0926667
chr9	130755754	130755854	4214282	0	+	0.56	(0.515,0.57]	chr9	386427	409	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000393293.4	protein_coding	protein_coding	protein_coding	protein_coding	15	119	2	1.50029	2.00298	2.50567	0.0131304	5.37609e-4	0.0999551	0.0214775
chr13	98453072	98453172	5642537	0	-	0.42	(0.408,0.44]	chr13	537432	80	UTR3	UTR3:EXON_MRNA	STK24	ENSG00000102572.15	ENST00000539966.6:ENST00000397517.6:ENST00000376554.8:ENST00000376547.7	protein_coding	protein_coding	protein_coding	protein_coding	10	83	2	1.4727	2.002915	2.53313	0.0217118	0.00739595	0.123836	0.074277
chrX	44905885	44905985	7648929	0	+	0.29	(0.28,0.32]	chrX	782726	315	INTRON	INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000675440.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000621147.5:ENST00000475233.1:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	91	2	1.4428	2.0028550000000003	2.56291	0.0712927	0.00227849	0.185716	0.0437013
chr5	145623207	145623307	2744513	0	-	0.51	(0.476,0.515]	chr5	258670	1495	INTRON	INTRON	PRELID2	ENSG00000186314.12	ENST00000510259.5	protein_coding	processed_transcript	protein_coding	processed_transcript	4	39	2	1.52615	2.00282	2.47949	0.0739267	0.0326974	0.190914	0.145164
chr6	136667495	136667594	3234383	0	-	0.50505	(0.476,0.515]	chr6	300658	78	INTRON	INTRON	MAP3K5	ENSG00000197442.10	ENST00000359015.5	protein_coding	protein_coding	protein_coding	protein_coding	4	39	2	1.52615	2.00282	2.47949	0.0739267	0.0326974	0.190914	0.145164
chr16	22504353	22504452	6322649	0	+	0.444444	(0.44,0.476]	chr16	605439	122	INTRON	INTRON	NPIPB5	ENSG00000243716.11	ENST00000415654.5:ENST00000415833.6:ENST00000546168.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	116	2	1.31461	2.0027	2.69079	0.0385695	5.45672e-4	0.159542	0.0215454
chr2	47791623	47791722	777124	0	+	0.40404	(0.378,0.408]	chr2	87419	1	INTRON	INTRON	MSH6	ENSG00000116062.18	ENST00000652107.1:ENST00000445503.5:ENST00000614496.4:ENST00000456246.1:ENST00000234420.11:ENST00000673922.1:ENST00000673637.1:ENST00000540021.6:ENST00000455383.5:ENST00000538136.1:ENST00000420813.5:ENST00000411819.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	82	2	1.61488	2.0026800000000002	2.39048	0.029782200000000002	0.00395852	0.129138	0.057511
chr10	63394168	63394268	4634673	0	-	0.32	(0.28,0.32]	chr10	426236	133	INTRON	INTRON	JMJD1C	ENSG00000171988.20	ENST00000399262.7:ENST00000633035.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	54	2	1.81582	2.0026599999999997	2.1895	0.068122	0.0227063	0.184298	0.124921
chr1	207048322	207048422	624920	0	-	0.33	(0.32,0.35]	chr1	74431	46	UTR3	UTR3:EXON_MRNA	YOD1	ENSG00000180667.11	ENST00000367084.1:ENST00000315927.9	protein_coding	protein_coding	protein_coding	protein_coding	22	177	2	1.00339	2.002655	3.00192	0.0544109	4.24805e-4	0.182272	0.0189958
chr8	73857769	73857869	3972049	0	-	0.38	(0.378,0.408]	chr8	364247	269	INTRON	INTRON	ENSG00000258677:UBE2W	ENSG00000258677.2:ENSG00000104343.21	ENST00000358757.5:ENST00000602593.6:ENST00000517608.5:ENST00000650817.1:ENST00000422906.6:ENST00000419880.7:ENST00000651945.1:ENST00000519277.5:ENST00000519255.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	46	2	1.6165	2.002615	2.38873	0.0458857	0.0374185	0.155878	0.149888
chr10	74068973	74069072	4455213	0	+	0.323232	(0.32,0.35]	chr10	411401	52	INTRON	INTRON	VCL	ENSG00000035403.18	ENST00000623461.3:ENST00000372755.7:ENST00000624354.3:ENST00000211998.10:ENST00000478896.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	48	2	1.69107	2.00256	2.31405	0.0517392	0.0517107	0.176696	0.159306
chr5	614329	614428	2313395	0	+	0.343434	(0.32,0.35]	chr5	223834	15	INTRON	INTRON	CEP72	ENSG00000112877.8	ENST00000264935.6	protein_coding	protein_coding	protein_coding	protein_coding	4	48	2	1.69107	2.00256	2.31405	0.0517392	0.0517107	0.176696	0.159306
chr6	63654878	63654978	2883481	0	+	0.45	(0.44,0.476]	chr6	273559	77	INTRON	INTRON	PHF3	ENSG00000118482.12	ENST00000262043.8:ENST00000506783.5:ENST00000481385.6:ENST00000515594.5:ENST00000494284.6:ENST00000509876.5:ENST00000509330.5:ENST00000393387.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	98	2	1.96975	2.0024949999999997	2.03524	0.0123514	0.00336403	0.0914865	0.053249
chr11	33858867	33858965	4941701	0	-	0.428571	(0.408,0.44]	chr11	463028	4	UTR3	UTR3:EXON_MRNA	LMO2	ENSG00000135363.12	ENST00000257818.3:ENST00000395833.7:ENST00000411482.1:ENST00000464025.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	88	2	1.65543	2.002415	2.3494	0.0193369	0.00462504	0.108861	0.062717
chr2	235539435	235539535	1041791	0	+	0.49	(0.476,0.515]	chr2	111222	145	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1:ENST00000402604.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	58	2	1.73688	2.002385	2.26789	0.0252731	0.0176567	0.133676	0.105233
chr5	44819630	44819730	2352109	0	+	0.31	(0.28,0.32]	chr5	226956	33	EXON_LNCRNA	EXON_LNCRNA	MRPS30	ENSG00000112996.11	ENST00000230914.4	protein_coding	processed_transcript	protein_coding	processed_transcript	9	110	2	1.59601	2.002385	2.40876	0.0236042	0.00588618	0.12907	0.0669992
chr17	56905285	56905385	6799057	0	-	0.48	(0.476,0.515]	chr17	671270	4	INTRON	INTRON	TRIM25	ENSG00000121060.19	ENST00000648772.1:ENST00000682766.1:ENST00000316881.9:ENST00000537230.3:ENST00000572021.6:ENST00000572550.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	58	2	1.63962	2.00231	2.365	0.0346854	0.0128901	0.148144	0.0926667
chrX	13340779	13340869	7622363	0	+	0.355556	(0.35,0.378]	chrX	780349	3	INTRON	INTRON	LINC01203	ENSG00000226985.7	ENST00000669963.1:ENST00000661545.1:ENST00000659526.1:ENST00000656410.1:ENST00000661104.1:ENST00000456091.2:ENST00000655502.1:ENST00000671651.1:ENST00000656979.1:ENST00000656271.1:ENST00000661629.1:ENST00000661464.1:ENST00000419566.5:ENST00000668192.1:ENST00000665887.1:ENST00000659191.1:ENST00000667868.1:ENST00000653729.1:ENST00000656111.1	lncRNA	lncRNA	lncRNA	lncRNA	7	71	2	1.63783	2.0023	2.36677	0.0250627	0.0139343	0.133086	0.0957526
chr11	27368358	27368456	4936358	0	-	0.397959	(0.378,0.408]	chr11	462308	5	CDS	CDS:EXON_MRNA	LGR4	ENSG00000205213.14	ENST00000379214.9:ENST00000389858.4	protein_coding	protein_coding	protein_coding	protein_coding	5	53	2	1.94559	2.00228	2.05897	0.0339294	0.0211434	0.134508	0.122929
chr17	46164356	46164455	6784583	0	-	0.383838	(0.378,0.408]	chr17	669232	71	INTRON	INTRON	KANSL1	ENSG00000120071.15	ENST00000574590.6:ENST00000572904.6:ENST00000432791.7:ENST00000575318.6:ENST00000638275.1:ENST00000262419.10:ENST00000648792.1:ENST00000639531.1:ENST00000639150.1:ENST00000639853.1:ENST00000571698.2:ENST00000639375.1:ENST00000638269.1:ENST00000576248.2:ENST00000639356.1:ENST00000574655.6:ENST00000639099.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	85	2	1.73164	2.00224	2.27284	0.0441773	0.00173415	0.149888	0.03851
chr17	82138488	82138587	6851682	0	-	0.40404	(0.378,0.408]	chr17	678976	27	INTRON	INTRON	CCDC57	ENSG00000176155.21	ENST00000694881.1:ENST00000389641.9:ENST00000694882.1:ENST00000665763.1:ENST00000578910.2:ENST00000419322.6:ENST00000392346.6:ENST00000582040.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	53	2	1.89251	2.002225	2.11194	0.0292534	0.0251428	0.133404	0.128055
chr2	169589570	169589670	906522	0	+	0.39	(0.378,0.408]	chr2	100017	43	INTRON	INTRON	PPIG	ENSG00000138398.17	ENST00000678088.1:ENST00000677392.1:ENST00000433207.6:ENST00000679324.1:ENST00000414307.6:ENST00000676508.1:ENST00000260970.8:ENST00000678695.1:ENST00000409714.7:ENST00000530152.5:ENST00000677750.1:ENST00000676557.1:ENST00000678721.1:ENST00000462903.6:ENST00000676756.1:ENST00000679107.1:ENST00000678499.1:ENST00000678638.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	53	2	1.89251	2.002225	2.11194	0.0292534	0.0251428	0.133404	0.128055
chr7	10657734	10657834	3483357	0	-	0.39	(0.378,0.408]	chr7	325772	958	INTRON	INTRON	MGC4859	ENSG00000283117.1	ENST00000634803.1	lncRNA	lncRNA	lncRNA	lncRNA	5	53	2	1.89251	2.002225	2.11194	0.0292534	0.0251428	0.133404	0.128055
chr19	17339999	17340099	7030046	0	+	0.51	(0.476,0.515]	chr19	700027	4	SS5_PROX	SS5_PROX:INTRON	GTPBP3	ENSG00000130299.17	ENST00000361619.9:ENST00000598038.5:ENST00000324894.13:ENST00000600625.5:ENST00000358792.11:ENST00000598493.5:ENST00000594018.5:ENST00000602056.1:ENST00000596125.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	81	2	1.91368	2.00217	2.09066	0.0135123	0.00772252	0.101363	0.0756858
chr12	132789690	132789790	5449810	0	-	0.59	(0.57,1]	chr12	522030	4	SS3_PROX	SS3_PROX:INTRON	GOLGA3	ENSG00000090615.16	ENST00000204726.9:ENST00000450791.8:ENST00000693666.1:ENST00000688114.1:ENST00000687190.1:ENST00000690511.1:ENST00000685283.1:ENST00000691696.1:ENST00000691636.1:ENST00000690897.1:ENST00000690465.1:ENST00000456883.7:ENST00000692253.1:ENST00000687502.1:ENST00000688772.1:ENST00000687479.1:ENST00000690709.1:ENST00000545875.4:ENST00000688251.1:ENST00000690573.1:ENST00000685195.1:ENST00000686425.1:ENST00000693437.1:ENST00000692831.1:ENST00000688068.1:ENST00000692951.1:ENST00000689441.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	35	2	1.86974	2.002095	2.13445	0.0241482	0.00983148	0.12011	0.0877296
chr10	125081098	125081198	4713540	0	-	0.49	(0.476,0.515]	chr10	434897	416	INTRON	INTRON	CTBP2	ENSG00000175029.17	ENST00000337195.9:ENST00000411419.6:ENST00000494626.6:ENST00000531469.5:ENST00000460976.5:ENST00000476817.1:ENST00000530884.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	71	2	1.23561	2.00208	2.76855	0.0722004	0.00244302	0.187533	0.0456956
chr14	101788281	101788380	5818761	0	+	0.30303	(0.28,0.32]	chr14	551825	17	INTRON	INTRON	PPP2R5C	ENSG00000078304.20	ENST00000694906.1:ENST00000422945.6:ENST00000554442.5:ENST00000556068.5:ENST00000328724.9:ENST00000554504.1:ENST00000553890.1:ENST00000553554.1:ENST00000556086.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	112	2	1.40579	2.00198	2.59817	0.0270181	0.00753816	0.135709	0.0748659
chr10	5715589	5715687	4384656	0	+	0.459184	(0.44,0.476]	chr10	404489	10	INTRON	INTRON	TASOR2	ENSG00000108021.21	ENST00000695832.1:ENST00000328090.9:ENST00000695737.1:ENST00000695833.1:ENST00000695834.1:ENST00000695835.1:ENST00000695836.1:ENST00000496681.5:ENST00000480839.6:ENST00000645567.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	11	105	2	1.76961	2.0019299999999998	2.23425	0.00808024	0.00441123	0.0807319	0.0587529
chr7	156770876	156770976	3686784	0	-	0.31	(0.28,0.32]	chr7	342051	67	INTRON	INTRON	LMBR1	ENSG00000105983.23	ENST00000353442.10:ENST00000448926.5:ENST00000415428.5:ENST00000454132.5:ENST00000434503.5:ENST00000430278.5:ENST00000434278.5:ENST00000444719.5:ENST00000461469.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	48	2	1.61031	2.00189	2.39347	0.0600513	0.0504457	0.190658	0.156383
chr7	121360823	121360921	3630538	0	-	0.326531	(0.32,0.35]	chr7	337353	3	INTRON	INTRON	FAM3C	ENSG00000196937.11	ENST00000359943.8:ENST00000412653.5:ENST00000426156.1	protein_coding	protein_coding	protein_coding	protein_coding	5	61	2	1.77704	2.001795	2.22655	0.0719969	0.00823133	0.187322	0.0812969
chr12	131771588	131771688	5249707	0	+	0.3	(0.28,0.32]	chr12	499209	49	INTRON	INTRON	SFSWAP	ENSG00000061936.10	ENST00000261674.9:ENST00000538548.5:ENST00000535236.5:ENST00000541286.5:ENST00000537164.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	54	2	1.76293	2.00177	2.24061	0.0766478	0.0194267	0.196164	0.119831
chr2	61319827	61319925	1129019	0	-	0.285714	(0.28,0.32]	chr2	121386	1	INTRON	INTRON	USP34	ENSG00000115464.15	ENST00000398571.7	protein_coding	protein_coding	protein_coding	protein_coding	4	54	2	1.76293	2.00177	2.24061	0.0766478	0.0194267	0.196164	0.119831
chr10	11585635	11585735	4555808	0	-	0.32	(0.28,0.32]	chr10	420461	119	INTRON	INTRON	USP6NL	ENSG00000148429.15	ENST00000609104.6:ENST00000606752.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	54	2	1.86684	2.001675	2.13651	0.0605813	0.0265696	0.171122	0.134088
chr7	66921561	66921648	3326235	0	+	0.701149	(0.57,1]	chr7	309330	1	SS5_PROX	SS5_PROX:INTRON	TMEM248	ENSG00000106609.16	ENST00000341567.8:ENST00000607045.5:ENST00000433271.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	21	2	1.63919	2.00165	2.36411	0.05421	0.0408868	0.164887	0.161534
chr7	881380	881479	3269157	0	+	0.494949	(0.476,0.515]	chr7	303674	27	INTRON	INTRON	SUN1:GET4	ENSG00000164828.18:ENSG00000239857.7	ENST00000457861.1:ENST00000265857.8:ENST00000412734.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	38	2	1.68092	2.00161	2.3223	0.0519312	0.0474026	0.169265	0.159306
chr21	22271006	22271106	7385078	0	+	0.48	(0.476,0.515]	chr21	752727	578	INTRON	INTRON	ENSG00000226043	ENSG00000226043.2	ENST00000667099.1:ENST00000654607.1:ENST00000444130.1	lncRNA	lncRNA	lncRNA	lncRNA	5	51	2	1.7425	2.00142	2.26034	0.0417334	0.0166235	0.147007	0.110511
chr6	15324424	15324524	2823731	0	+	0.36	(0.35,0.378]	chr6	265192	95	INTRON	INTRON	JARID2	ENSG00000008083.14	ENST00000341776.7:ENST00000397311.4	protein_coding	protein_coding	protein_coding	protein_coding	5	56	2	1.6599	2.00134	2.34278	0.0545616	0.0129593	0.165292	0.0991015
chr6	157919642	157919741	3016740	0	+	0.363636	(0.35,0.378]	chr6	281411	93	INTRON	INTRON	SNX9	ENSG00000130340.17	ENST00000680863.1:ENST00000679814.1:ENST00000680464.1:ENST00000681186.1:ENST00000679732.1:ENST00000681183.1:ENST00000681534.1:ENST00000681651.1:ENST00000680089.1:ENST00000680078.1:ENST00000680974.1:ENST00000680095.1:ENST00000681138.1:ENST00000392185.8:ENST00000679790.1:ENST00000680495.1:ENST00000679691.1:ENST00000681881.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	56	2	1.6599	2.00134	2.34278	0.0545616	0.0129593	0.165292	0.0991015
chr2	167865545	167865645	1258456	0	-	0.49	(0.476,0.515]	chr2	133328	23	INTRON	INTRON	B3GALT1-AS1	ENSG00000235335.3	ENST00000430546.2:ENST00000657553.1:ENST00000670221.1:ENST00000436982.2	lncRNA	lncRNA	lncRNA	lncRNA	6	61	2	1.88582	2.001305	2.11679	0.0273268	0.0115627	0.123904	0.0962115
chr17	32472520	32472617	6598631	0	+	0.494845	(0.476,0.515]	chr17	641998	30	INTRON	INTRON	PSMD11	ENSG00000108671.11	ENST00000649012.1:ENST00000457654.6:ENST00000578397.5:ENST00000261712.8:ENST00000584340.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	43	2	1.8388	2.001285	2.16377	0.0564473	0.0243026	0.184423	0.12011
chr5	131588988	131589088	2718708	0	-	0.46	(0.44,0.476]	chr5	255608	266	INTRON	INTRON	RAPGEF6	ENSG00000158987.22	ENST00000509018.6:ENST00000507093.5:ENST00000296859.10:ENST00000627212.2:ENST00000308008.10:ENST00000515170.5:ENST00000510071.5:ENST00000503398.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	50	2	1.54104	2.001195	2.46135	0.0374637	0.0339289	0.146815	0.140008
chr22	19407474	19407574	7554179	0	-	0.33	(0.32,0.35]	chr22	772303	2	SS3_PROX	SS3_PROX:INTRON	HIRA:C22orf39	ENSG00000100084.14:ENSG00000242259.9	ENST00000263208.5:ENST00000340170.8:ENST00000509549.5:ENST00000464189.5:ENST00000452818.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	16	147	2	1.03529	2.001175	2.96706	0.0641695	5.0005e-4	0.199407	0.0206993
chr21	31661734	31661834	7395722	0	+	0.48	(0.476,0.515]	chr21	753287	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	SOD1	ENSG00000142168.15	ENST00000389995.4:ENST00000270142.11:ENST00000476106.5:ENST00000470944.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	78	2	1.62782	2.00115	2.37448	0.0274391	0.00419067	0.123904	0.0591344
chr19	897740	897840	7110773	0	-	0.65	(0.57,1]	chr19	714141	2	SS3_PROX	SS3_PROX:INTRON	R3HDM4	ENSG00000198858.10	ENST00000589428.5:ENST00000361574.10:ENST00000587975.2:ENST00000591829.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	32	2	1.83769	2.000995	2.1643	0.0297587	0.00941704	0.12908	0.0861183
chr2	58167169	58167268	1125993	0	-	0.434343	(0.408,0.44]	chr2	120896	14	EXON_MRNA	EXON_MRNA:INTRON	FANCL	ENSG00000115392.13	ENST00000696400.1:ENST00000403295.8:ENST00000696492.1:ENST00000427708.7:ENST00000696314.1:ENST00000696315.1:ENST00000696454.1:ENST00000696508.1:ENST00000696548.1:ENST00000696542.1:ENST00000696432.1:ENST00000696319.1:ENST00000403676.6:ENST00000696433.1:ENST00000696434.1:ENST00000696499.1:ENST00000696564.1:ENST00000402135.8:ENST00000696546.1:ENST00000233741.9:ENST00000696316.1:ENST00000696378.1:ENST00000696435.1:ENST00000696493.1:ENST00000696543.1:ENST00000696544.1:ENST00000696545.1:ENST00000696565.1:ENST00000696620.1:ENST00000696621.1:ENST00000696635.1:ENST00000696364.1:ENST00000696634.1:ENST00000696619.1:ENST00000696317.1:ENST00000696622.1:ENST00000696467.1:ENST00000696547.1:ENST00000449070.6:ENST00000696305.1:ENST00000417361.2:ENST00000696338.1:ENST00000696361.1:ENST00000696318.1:ENST00000696371.1:ENST00000696409.1:ENST00000696410.1:ENST00000696455.1:ENST00000696468.1:ENST00000696527.1:ENST00000696567.1:ENST00000696324.1:ENST00000696566.1:ENST00000696623.1:ENST00000446381.6:ENST00000696469.1:ENST00000696624.1:ENST00000696411.1:ENST00000696475.1:ENST00000696636.1:ENST00000470506.2:ENST00000696358.1:ENST00000696373.1:ENST00000696394.1:ENST00000696320.1:ENST00000696339.1:ENST00000696395.1:ENST00000696341.1:ENST00000696340.1:ENST00000696374.1:ENST00000696396.1:ENST00000696412.1:ENST00000696375.1:ENST00000696342.1:ENST00000696325.1:ENST00000696399.1:ENST00000696398.1:ENST00000696306.1:ENST00000696397.1:ENST00000696360.1:ENST00000696344.1:ENST00000696343.1:ENST00000696637.1:ENST00000696362.1:ENST00000696528.1:ENST00000696497.1:ENST00000696326.1:ENST00000696638.1:ENST00000696625.1:ENST00000696376.1:ENST00000696510.1:ENST00000696438.1:ENST00000696496.1:ENST00000696509.1:ENST00000696569.1:ENST00000696457.1:ENST00000696458.1:ENST00000696473.1:ENST00000696495.1:ENST00000696415.1:ENST00000696472.1:ENST00000696494.1:ENST00000696363.1:ENST00000696414.1:ENST00000696529.1:ENST00000696471.1:ENST00000696439.1:ENST00000696459.1:ENST00000696498.1:ENST00000696532.1:ENST00000696416.1:ENST00000696530.1:ENST00000696460.1:ENST00000696570.1:ENST00000696531.1:ENST00000696440.1:ENST00000696307.1:ENST00000696401.1:ENST00000696345.1:ENST00000696377.1:ENST00000696417.1:ENST00000696594.1:ENST00000696595.1:ENST00000696379.1:ENST00000696346.1:ENST00000696380.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	101	2	1.87885	2.00094	2.12303	0.00827079	0.00586883	0.0774402	0.0690758
chr22	38290786	38290882	7586898	0	-	0.229167	[0,0.28]	chr22	776544	2	UTR3	UTR3:EXON_MRNA	CSNK1E	ENSG00000213923.13	ENST00000359867.7:ENST00000396832.6	protein_coding	protein_coding	protein_coding	protein_coding	5	75	2	1.62991	2.000905	2.3719	0.0671202	0.0139689	0.183051	0.10247
chr7	77711334	77711434	3343218	0	+	0.45	(0.44,0.476]	chr7	311432	136	INTRON	INTRON	RSBN1L	ENSG00000187257.16	ENST00000334955.13:ENST00000445288.5	protein_coding	protein_coding	protein_coding	protein_coding	5	51	2	1.55662	2.00088	2.44514	0.0688347	0.0087381	0.184298	0.0845538
chr18	700823	700922	6939660	0	-	0.434343	(0.408,0.44]	chr18	686437	31	INTRON	INTRON	ENOSF1	ENSG00000132199.20	ENST00000647584.2:ENST00000383578.7:ENST00000340116.12:ENST00000581475.5:ENST00000580982.5:ENST00000585128.6:ENST00000584453.5:ENST00000578651.5:ENST00000585004.5:ENST00000579053.5:ENST00000583771.1:ENST00000580605.5:ENST00000581332.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	111	2	1.87871	2.00087	2.12303	0.00625147	0.00586883	0.0690758	0.0684077
chr11	68557578	68557675	4818316	0	+	0.587629	(0.57,1]	chr11	448971	30	INTRON	INTRON	PPP6R3	ENSG00000110075.15	ENST00000534534.5:ENST00000524845.5:ENST00000393800.7:ENST00000265637.8:ENST00000524904.5:ENST00000393801.7:ENST00000265636.9:ENST00000529710.5:ENST00000527403.6	protein_coding	protein_coding	protein_coding	protein_coding	6	32	2	1.98953	2.000845	2.01216	0.0182848	0.0163389	0.115629	0.101571
chr15	41700057	41700156	6007258	0	+	0.575758	(0.57,1]	chr15	571658	5	INTRON	INTRON	MGA	ENSG00000174197.18	ENST00000566718.6:ENST00000545763.6:ENST00000570161.6:ENST00000566586.6:ENST00000219905.13	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	32	2	1.98953	2.000845	2.01216	0.0182848	0.0163389	0.115629	0.101571
chr21	43736553	43736653	7413328	0	+	0.45	(0.44,0.476]	chr21	755523	2	SS3_PROX	SS3_PROX:INTRON	PDXK	ENSG00000160209.19	ENST00000398081.5:ENST00000468090.5:ENST00000291565.9:ENST00000398085.7:ENST00000470029.5:ENST00000498040.5:ENST00000327574.4:ENST00000472777.5:ENST00000476313.5:ENST00000481512.5:ENST00000621478.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	51	2	1.61163	2.0008299999999997	2.39003	0.0598319	0.0106488	0.169278	0.0915714
chr4	62748	62848	1905384	0	+	0.32	(0.28,0.32]	chr4	191003	22	INTRON	INTRON	ZNF595	ENSG00000272602.6	ENST00000608255.2:ENST00000609518.5:ENST00000509152.3:ENST00000610261.6	protein_coding	protein_coding	protein_coding	protein_coding	46	570	2	1.74189	2.000785	2.25968	0.00328352	1.22565e-4	0.0509766	0.00947523
chr8	108243197	108243292	4023222	0	-	0.347368	(0.32,0.35]	chr8	367688	10	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	EIF3E	ENSG00000104408.11	ENST00000678042.1:ENST00000678773.1:ENST00000677409.1:ENST00000676892.1:ENST00000523674.2:ENST00000677674.1:ENST00000220849.10:ENST00000678937.1:ENST00000677084.1:ENST00000676706.1:ENST00000518100.6:ENST00000677040.1:ENST00000676698.1:ENST00000522352.6:ENST00000521297.2:ENST00000677501.1:ENST00000519030.6:ENST00000519627.2:ENST00000518345.2:ENST00000522445.6:ENST00000678334.1:ENST00000678023.1:ENST00000678797.1:ENST00000677614.1:ENST00000676642.1:ENST00000677965.1:ENST00000678901.1:ENST00000678243.1:ENST00000676663.1:ENST00000679198.1:ENST00000521614.6:ENST00000678004.1:ENST00000678881.1:ENST00000677590.1:ENST00000677272.1:ENST00000676530.1:ENST00000677746.1:ENST00000677447.1:ENST00000676548.1:ENST00000676487.1:ENST00000521440.6:ENST00000518442.5:ENST00000522887.1:ENST00000518634.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	92	2	1.49732	2.000715	2.50411	0.0455974	0.00267989	0.149888	0.0478767
chr18	9106475	9106575	6868631	0	+	0.33	(0.32,0.35]	chr18	680510	11	INTRON	INTRON	NDUFV2	ENSG00000178127.13	ENST00000577703.1:ENST00000318388.11:ENST00000583375.5:ENST00000400033.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	25	293	2	1.60928	2.00068	2.39208	0.0116898	7.98323e-5	0.0892574	0.00743599
chr6	10791255	10791354	2811115	0	+	0.383838	(0.378,0.408]	chr6	264506	207	INTRON	INTRON	TMEM14B	ENSG00000137210.14	ENST00000463448.5:ENST00000473166.5:ENST00000460341.5:ENST00000473807.5:ENST00000463100.5:ENST00000478732.1:ENST00000467229.1:ENST00000489137.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	4	44	2	1.8252	2.0006399999999998	2.17608	0.0619563	0.0218783	0.174514	0.123836
chr1	169465948	169465977	582464	0	-	0.310345	(0.28,0.32]	chr1	70191	1	CDS	CDS:EXON_MRNA	SLC19A2	ENSG00000117479.15	ENST00000236137.10:ENST00000367804.4:ENST00000643377.1:ENST00000646596.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	49	2	1.81152	2.000635	2.18975	0.0776042	0.034446	0.196285	0.147767
chr15	30639117	30639184	5992403	0	+	0.238806	[0,0.28]	chr15	569729	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ENSG00000284906:ARHGAP11B	ENSG00000284906.3:ENSG00000285077.3	ENST00000564902.5:ENST00000689358.1:ENST00000428041.4:ENST00000693711.1:ENST00000685924.1:ENST00000563110.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	71	2	1.40573	2.0006049999999997	2.59548	0.0578123	0.0346067	0.188564	0.136649
chr15	28263958	28264055	6123467	0	-	0.391753	(0.378,0.408]	chr15	583335	4	INTRON	INTRON	HERC2	ENSG00000128731.18	ENST00000261609.13:ENST00000564734.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	74	2	1.77782	2.000585	2.22335	0.0388177	0.00388279	0.143072	0.0567196
chr2	65108104	65108204	1142742	0	-	0.51	(0.476,0.515]	chr2	122186	29	INTRON	INTRON	RAB1A	ENSG00000138069.18	ENST00000649427.1:ENST00000494188.1:ENST00000409784.8:ENST00000409892.5:ENST00000409751.1:ENST00000398529.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	60	2	1.92984	2.0004999999999997	2.07116	0.0466474	0.00731321	0.151522	0.076234
chrX	44913285	44913385	7649003	0	+	0.45	(0.44,0.476]	chrX	782726	389	INTRON	INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000675440.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000621147.5:ENST00000475233.1:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	78	2	1.892	2.00046	2.10892	0.0132897	0.00935701	0.0944742	0.0858596
chr1	29095057	29095157	60791	0	+	0.4	(0.378,0.408]	chr1	7763	106	INTRON	INTRON	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000373798.5:ENST00000649674.1:ENST00000343067.9:ENST00000349460.9:ENST00000646871.1:ENST00000488277.1:ENST00000490308.2:ENST00000650132.1:ENST00000649992.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	74	2	1.60639	2.000415	2.39444	0.0205731	0.0122858	0.122348	0.091087
chrX	41349007	41349106	7645826	0	+	0.444444	(0.44,0.476]	chrX	782558	12	UTR3	UTR3:EXON_MRNA:INTRON	DDX3X	ENSG00000215301.11	ENST00000625837.2:ENST00000626301.2:ENST00000629785.2:ENST00000630255.2:ENST00000630370.2:ENST00000630858.2:ENST00000629496.3:ENST00000478993.5:ENST00000457138.7:ENST00000644876.2:ENST00000399959.7:ENST00000644074.1:ENST00000645338.1:ENST00000646196.1:ENST00000642793.1:ENST00000646940.1:ENST00000644307.1:ENST00000645561.1:ENST00000645080.1:ENST00000642597.1:ENST00000642722.1:ENST00000644109.1:ENST00000644958.1:ENST00000646122.1:ENST00000644513.1:ENST00000645589.1:ENST00000441189.4:ENST00000646822.1:ENST00000646223.1:ENST00000643963.1:ENST00000646319.1:ENST00000644073.1:ENST00000644677.1:ENST00000642322.1:ENST00000645120.1:ENST00000646107.1:ENST00000642589.1:ENST00000645380.1:ENST00000642424.1:ENST00000642161.1:ENST00000645574.1:ENST00000646679.1:ENST00000647286.1:ENST00000642687.1:ENST00000642801.1:ENST00000616050.3:ENST00000647477.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	78	2	1.74644	2.00037	2.2543	0.0165016	0.00787184	0.110334	0.076155
chr11	47789400	47789497	4951546	0	-	0.391753	(0.378,0.408]	chr11	464499	4	INTRON	INTRON	NUP160	ENSG00000030066.14	ENST00000694866.1:ENST00000378460.7:ENST00000530326.5	protein_coding	protein_coding	protein_coding	protein_coding	6	61	2	1.43665	2.000365	2.56408	0.0669652	0.00566993	0.183051	0.0678837
chr19	5934372	5934462	7125159	0	-	0.388889	(0.378,0.408]	chr19	717340	9	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	RANBP3	ENSG00000031823.14	ENST00000340578.10:ENST00000439268.6:ENST00000592771.5:ENST00000586344.5:ENST00000591092.5:ENST00000034275.12:ENST00000587479.2:ENST00000592621.5:ENST00000590623.5:ENST00000591736.5:ENST00000590953.5:ENST00000588879.5:ENST00000587159.5:ENST00000586117.5:ENST00000589353.5:ENST00000587463.5:ENST00000588010.5:ENST00000591124.5:ENST00000585339.5:ENST00000592133.5:ENST00000591881.5:ENST00000589886.5:ENST00000587263.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	61	2	1.43665	2.000365	2.56408	0.0669652	0.00566993	0.183051	0.0678837
chr22	49536273	49536373	7601442	0	-	0.34	(0.32,0.35]	chr22	778566	947	INTRON	INTRON	MIR3667HG	ENSG00000188511.13	ENST00000414287.5:ENST00000416411.1	lncRNA	lncRNA	lncRNA	lncRNA	6	72	2	1.77409	2.00032	2.22655	0.0414296	0.00823133	0.146067	0.0812969
chr19	58556088	58556188	7218480	0	-	0.6	(0.57,1]	chr19	733397	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	UBE2M	ENSG00000130725.8	ENST00000253023.8:ENST00000595957.5	protein_coding	protein_coding	protein_coding	protein_coding	9	46	2	1.9324	2.0003149999999996	2.06823	0.00747247	0.00680672	0.0772645	0.0711884
chr7	156870675	156870775	3687793	0	-	0.52	(0.515,0.57]	chr7	342096	334	INTRON	INTRON	LMBR1	ENSG00000105983.23	ENST00000353442.10:ENST00000415428.5:ENST00000454132.5:ENST00000434503.5:ENST00000430278.5:ENST00000434278.5:ENST00000444719.5:ENST00000461469.5:ENST00000414218.1:ENST00000434453.1:ENST00000498034.5:ENST00000433968.5:ENST00000485985.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	12	100	2	1.92814	2.000285	2.07243	0.00827421	0.00172897	0.0774402	0.0384338
chr3	194465899	194465998	1890989	0	-	0.484848	(0.476,0.515]	chr3	189242	33	INTRON	INTRON	ATP13A3	ENSG00000133657.17	ENST00000687055.1:ENST00000645538.1:ENST00000645319.2:ENST00000439040.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	76	2	1.41803	2.00028	2.58253	0.0320614	0.00600101	0.145026	0.0674604
chr20	32154406	32154504	7254770	0	+	0.326531	(0.32,0.35]	chr20	736904	32	INTRON	INTRON	TM9SF4	ENSG00000101337.16	ENST00000398022.7:ENST00000217315.9	protein_coding	protein_coding	protein_coding	protein_coding	6	72	2	1.8526	2.000265	2.14793	0.0332438	0.0110079	0.134145	0.0927187
chr4	17956469	17956569	2117638	0	-	0.35	(0.32,0.35]	chr4	209129	468	INTRON	INTRON	LCORL	ENSG00000178177.17	ENST00000635767.2:ENST00000326877.8:ENST00000675131.1:ENST00000675143.1:ENST00000637787.1:ENST00000675605.1:ENST00000510451.5:ENST00000510121.5:ENST00000675927.1:ENST00000382224.5:ENST00000382226.5:ENST00000676061.1:ENST00000674942.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	72	2	1.8526	2.000265	2.14793	0.0332438	0.0110079	0.134145	0.0927187
chr17	59893924	59894024	6643770	0	+	0.36	(0.35,0.378]	chr17	648796	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	RPS6KB1	ENSG00000108443.14	ENST00000393021.7:ENST00000472940.5:ENST00000225577.9:ENST00000477179.5:ENST00000443572.6:ENST00000489824.1:ENST00000406116.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	10	109	2	1.77377	2.00022	2.22667	0.0180971	0.0022763	0.107237	0.0437013
chr9	130583085	130583185	4213127	0	+	0.4	(0.378,0.408]	chr9	386268	11	INTRON	INTRON	FUBP3	ENSG00000107164.16	ENST00000319725.10:ENST00000650723.1:ENST00000465949.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	53	2	1.8374	2.000215	2.16303	0.0299228	0.0252473	0.142135	0.12011
chr5	131330509	131330609	2485302	0	+	0.43	(0.408,0.44]	chr5	237120	140	INTRON	INTRON	CDC42SE2	ENSG00000158985.14	ENST00000502840.5:ENST00000511432.5:ENST00000506419.5:ENST00000395246.5:ENST00000505065.2:ENST00000504701.5:ENST00000503291.5:ENST00000360515.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	59	2	1.55035	2.00019	2.45003	0.0455214	0.00990006	0.164236	0.0838372
chr6	43620763	43620857	3097501	0	-	0.510638	(0.476,0.515]	chr6	290149	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	GTPBP2	ENSG00000172432.19	ENST00000496137.5:ENST00000307114.11:ENST00000476510.5:ENST00000419497.5:ENST00000432918.5:ENST00000307126.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	13	124	2	1.75116	2.0001800000000003	2.2492	0.00687667	0.00238578	0.0749442	0.0439909
chr4	139396017	139396117	2050664	0	+	0.37	(0.35,0.378]	chr4	203414	19	INTRON	INTRON	NAA15	ENSG00000164134.13	ENST00000515576.1	protein_coding	protein_coding	protein_coding	protein_coding	7	80	2	1.97646	2.00018	2.0239	0.0193942	0.0110441	0.119831	0.0873897
chr22	20578219	20578318	7480081	0	+	0.444444	(0.44,0.476]	chr22	763027	26	INTRON	INTRON	MED15	ENSG00000099917.17	ENST00000433831.5:ENST00000292733.11:ENST00000263205.11:ENST00000406969.5:ENST00000382974.6:ENST00000492381.5:ENST00000478831.5:ENST00000489651.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	16	149	2	1.59042	2.000165	2.40991	0.0101604	8.42944e-4	0.0850389	0.0263813
chr20	35711219	35711319	7336229	0	-	0.27	[0,0.28]	chr20	747422	4	INTRON	INTRON	RBM39	ENSG00000131051.24	ENST00000253363.11:ENST00000639702.1:ENST00000656873.1:ENST00000463004.5:ENST00000361162.10:ENST00000461283.5:ENST00000403542.6:ENST00000338163.10:ENST00000528062.7:ENST00000429968.5:ENST00000444878.5:ENST00000665058.1:ENST00000476806.5:ENST00000495293.5:ENST00000492779.5:ENST00000465158.5:ENST00000448303.5:ENST00000470563.5:ENST00000615771.5:ENST00000471635.5:ENST00000475651.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	13	143	2	1.32637	2.000155	2.67394	0.0317933	0.00697944	0.14477	0.0718189
chr5	79635960	79636060	2398967	0	+	0.31	(0.28,0.32]	chr5	231707	121	INTRON	INTRON	TENT2	ENSG00000164329.14	ENST00000423041.6:ENST00000504233.5:ENST00000453514.6:ENST00000428308.6:ENST00000296783.7	protein_coding	protein_coding	protein_coding	protein_coding	7	85	2	1.90237	2.000155	2.09794	0.0340483	0.0104138	0.134863	0.0901622
chr19	28418672	28418767	7165328	0	-	0.536842	(0.515,0.57]	chr19	724143	3	EXON_LNCRNA	EXON_LNCRNA	ENSG00000260725	ENSG00000260725.1	ENST00000567877.1	lncRNA	lncRNA	lncRNA	lncRNA	12	100	2	1.72899	2.00014	2.27129	0.00899744	0.00178129	0.0851009	0.0379201
chr10	96134408	96134495	4502239	0	+	0.528736	(0.515,0.57]	chr10	414475	4	INTRON	INTRON	ZNF518A	ENSG00000177853.15	ENST00000614149.2:ENST00000488700.5:ENST00000624776.4:ENST00000539666.5:ENST00000563195.1:ENST00000316045.10	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	16	129	2	1.70083	2.000135	2.29944	0.00520656	9.49246e-4	0.0655877	0.0281755
chr3	10151134	10151231	1363211	0	+	0.556701	(0.515,0.57]	chr3	143688	13	UTR3	UTR3:EXON_MRNA	VHL	ENSG00000134086.9	ENST00000696153.1:ENST00000256474.3:ENST00000696142.1:ENST00000345392.2:ENST00000696143.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	29	234	2	1.90027	2.000135	2.1	6.16096e-4	5.19729e-4	0.0223951	0.0209528
chr9	130734954	130735054	4214074	0	+	0.22	[0,0.28]	chr9	386427	201	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000393293.4	protein_coding	protein_coding	protein_coding	protein_coding	22	319	2	1.82101	2.00013	2.17925	0.0067629	9.76151e-4	0.0711802	0.0287765
chr20	35723173	35723272	7336355	0	-	0.353535	(0.35,0.378]	chr20	747452	9	INTRON	INTRON	RBM39	ENSG00000131051.24	ENST00000253363.11:ENST00000639702.1:ENST00000656873.1:ENST00000463004.5:ENST00000361162.10:ENST00000461283.5:ENST00000403542.6:ENST00000338163.10:ENST00000528062.7:ENST00000429968.5:ENST00000444878.5:ENST00000665058.1:ENST00000492779.5:ENST00000448303.5:ENST00000490484.7:ENST00000494274.5:ENST00000374038.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	99	2	1.74826	2.00008	2.2519	0.0279529	0.0020199	0.124524	0.0416115
chr16	3682352	3682450	6434116	0	-	0.479592	(0.476,0.515]	chr16	619345	22	INTRON	INTRON	TRAP1	ENSG00000126602.11	ENST00000246957.10:ENST00000538171.5:ENST00000576335.5:ENST00000571804.5:ENST00000574941.5:ENST00000576106.5:ENST00000571538.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	71	2	1.93099	1.999985	2.06898	0.0140312	0.0137491	0.10247	0.0959618
chr9	131136206	131136306	4215732	0	+	0.39	(0.378,0.408]	chr9	386543	2	SS5_PROX	SS5_PROX:INTRON	NUP214	ENSG00000126883.19	ENST00000695497.1:ENST00000695498.1:ENST00000695496.1:ENST00000695495.1:ENST00000695494.1:ENST00000695493.1:ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000525561.2:ENST00000651022.1:ENST00000695499.1:ENST00000530843.1:ENST00000530863.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	36	361	2	1.72446	1.999945	2.27543	0.00160865	2.22367e-4	0.03684	0.0136504
chr1	182866243	182866343	273262	0	+	0.24	[0,0.28]	chr1	31924	4	SS3_PROX	SS3_PROX:INTRON	DHX9	ENSG00000135829.17	ENST00000367549.4	protein_coding	protein_coding	protein_coding	protein_coding	4	55	2	1.66929	1.99992	2.33055	0.062338	0.0537506	0.180803	0.175343
chr19	52190854	52190944	7094266	0	+	0.522222	(0.515,0.57]	chr19	711162	3	SS3_PROX	SS3_PROX:INTRON	PPP2R1A	ENSG00000105568.18	ENST00000490868.5:ENST00000454220.6:ENST00000322088.11:ENST00000477989.1:ENST00000628959.1:ENST00000468280.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	63	2	1.54399	1.99992	2.45585	0.0259541	0.00797827	0.121732	0.0798772
chr11	47530861	47530960	4950180	0	-	0.535354	(0.515,0.57]	chr11	464246	62	INTRON	INTRON	CELF1	ENSG00000149187.19	ENST00000310513.10:ENST00000687097.1:ENST00000531165.5:ENST00000530151.5:ENST00000525841.5:ENST00000526419.1	protein_coding	protein_coding	protein_coding	protein_coding	9	76	2	1.97876	1.999915	2.02107	0.00910188	0.00610685	0.0809976	0.0706941
chr4	75669861	75669961	2162077	0	-	0.49	(0.476,0.515]	chr4	213025	1	SS5_PROX	SS5_PROX:INTRON	G3BP2	ENSG00000138757.15	ENST00000676666.1:ENST00000678062.1:ENST00000678100.1:ENST00000678122.1:ENST00000677265.1:ENST00000678971.1:ENST00000679281.1:ENST00000677333.1:ENST00000676470.1:ENST00000677620.1:ENST00000677606.1:ENST00000678798.1:ENST00000677583.1:ENST00000678447.1:ENST00000678875.1:ENST00000678244.1:ENST00000676974.1:ENST00000677003.1:ENST00000677889.1:ENST00000678329.1:ENST00000676584.1:ENST00000678552.1:ENST00000677192.1:ENST00000677727.1:ENST00000678265.1:ENST00000676839.1:ENST00000677876.1:ENST00000678123.1:ENST00000678578.1:ENST00000677171.1:ENST00000395719.7:ENST00000359707.9:ENST00000677060.1:ENST00000679294.1:ENST00000677201.1:ENST00000677952.1:ENST00000677125.1:ENST00000678273.1:ENST00000357854.7:ENST00000677162.1:ENST00000677566.1:ENST00000677970.1:ENST00000503660.5:ENST00000678670.1:ENST00000502654.5:ENST00000507745.5:ENST00000513927.1:ENST00000511146.5:ENST00000507252.5:ENST00000507701.1:ENST00000499709.3:ENST00000511868.6:ENST00000508510.6:ENST00000676702.1:ENST00000677145.1:ENST00000509561.6:ENST00000677489.1:ENST00000678389.1:ENST00000676485.1:ENST00000678908.1:ENST00000678843.1:ENST00000676641.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	61	2	1.79187	1.99988	2.20789	0.0362169	0.00820497	0.138959	0.081115
chr5	32167751	32167851	2597450	0	-	0.4	(0.378,0.408]	chr5	246744	235	INTRON	INTRON	GOLPH3	ENSG00000113384.14	ENST00000265070.7:ENST00000503610.5:ENST00000512668.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	95	2	1.37524	1.999825	2.62441	0.0610755	5.61983e-4	0.172411	0.0216479
chr1	35971128	35971226	71546	0	+	0.265306	[0,0.28]	chr1	9144	37	INTRON	INTRON	AGO3	ENSG00000126070.20	ENST00000324350.9:ENST00000397828.3:ENST00000634486.1:ENST00000373191.9:ENST00000246314.10:ENST00000491443.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	126	2	1.63696	1.9997600000000002	2.36256	0.0224451	0.00833733	0.124921	0.0774402
chr18	1315820	1315920	6941337	0	-	0.46	(0.44,0.476]	chr18	686577	117	INTRON	INTRON	LINC00470	ENSG00000132204.14	ENST00000657423.1:ENST00000657618.1:ENST00000584090.5:ENST00000660947.1:ENST00000669242.1:ENST00000660475.1:ENST00000653775.1:ENST00000661931.1:ENST00000412816.7:ENST00000577867.5:ENST00000584492.5:ENST00000667416.1:ENST00000661852.1:ENST00000657919.1:ENST00000661646.1:ENST00000667776.1:ENST00000654559.1:ENST00000661233.1:ENST00000653213.1:ENST00000659094.1:ENST00000660964.1:ENST00000577403.6:ENST00000660358.1:ENST00000669153.1:ENST00000657121.1:ENST00000655957.1:ENST00000659289.1:ENST00000665133.1:ENST00000671558.1:ENST00000666542.1:ENST00000663512.1:ENST00000582862.6:ENST00000578835.5:ENST00000669312.1:ENST00000581430.5:ENST00000581212.1:ENST00000658090.1	lncRNA	lncRNA	lncRNA	lncRNA	10	98	2	1.70687	1.9997250000000002	2.29258	0.0158463	0.00279559	0.101453	0.0488779
chr11	5366396	5366496	4896883	0	-	0.45	(0.44,0.476]	chr11	459187	191	INTRON	INTRON	HBG2:ENSG00000239920:HBE1:OR51B5	ENSG00000196565.15:ENSG00000239920.2:ENSG00000213931.7:ENSG00000167355.8	ENST00000380252.6:ENST00000380259.7:ENST00000292896.3:ENST00000380237.5:ENST00000420726.6:ENST00000420465.6:ENST00000415970.6:ENST00000418729.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:nonsense_mediated_decay:processed_transcript	6	63	2	1.81595	1.999695	2.18344	0.0317953	0.0102102	0.14477	0.0850389
chr6	170623804	170623904	3037689	0	+	0.3	(0.28,0.32]	chr6	283173	78	INTRON	INTRON	ENSG00000287411:ENSG00000230423	ENSG00000287411.1:ENSG00000230423.3	ENST00000667394.1:ENST00000656791.1	lncRNA	lncRNA	lncRNA	lncRNA	8	92	2	1.2552	1.9996900000000002	2.74418	0.0765217	0.00328589	0.196163	0.0527031
chr5	44816541	44816641	2352078	0	+	0.28	[0,0.28]	chr5	226956	2	EXON_LNCRNA	EXON_LNCRNA	MRPS30	ENSG00000112996.11	ENST00000230914.4	protein_coding	processed_transcript	protein_coding	processed_transcript	8	105	2	1.6609	1.999575	2.33825	0.0206759	0.0195228	0.122348	0.109483
chr2	32378466	32378565	730993	0	+	0.515152	(0.476,0.515]	chr2	84280	3	INTRON	INTRON	BIRC6	ENSG00000115760.15	ENST00000421745.7:ENST00000648282.1	protein_coding	protein_coding	protein_coding	protein_coding	4	39	2	1.86014	1.99934	2.13854	0.0776563	0.0277606	0.196285	0.137011
chr13	50080824	50080924	5594582	0	-	0.39	(0.378,0.408]	chr13	534723	48	INTRON	INTRON	DLEU2	ENSG00000231607.14	ENST00000621282.4:ENST00000688690.1:ENST00000668305.1:ENST00000425586.5:ENST00000686946.1:ENST00000458725.7:ENST00000692504.1:ENST00000443587.6:ENST00000686700.1:ENST00000691340.1:ENST00000433070.7:ENST00000659339.1:ENST00000662092.1:ENST00000666359.2:ENST00000449579.2:ENST00000421758.6:ENST00000690259.1	lncRNA	lncRNA	lncRNA	lncRNA	4	44	2	1.76032	1.999315	2.23831	0.0721577	0.0179575	0.187433	0.114265
chr16	1863798	1863897	6430272	0	-	0.383838	(0.378,0.408]	chr16	618392	13	INTRON	INTRON	MEIOB	ENSG00000162039.17	ENST00000325962.9:ENST00000470044.5:ENST00000397344.7:ENST00000496541.6:ENST00000460494.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	44	2	1.76032	1.999315	2.23831	0.0721577	0.0179575	0.187433	0.114265
chr14	21264835	21264932	5835122	0	-	0.43299	(0.408,0.44]	chr14	554468	24	UTR5	UTR5:EXON_MRNA:INTRON	HNRNPC	ENSG00000092199.19	ENST00000336053.10:ENST00000553300.6:ENST00000554969.5:ENST00000556142.5:ENST00000554455.5:ENST00000430246.6:ENST00000553753.5:ENST00000555309.5:ENST00000555914.5:ENST00000557442.5:ENST00000556628.5:ENST00000556513.5:ENST00000555883.5:ENST00000557201.5:ENST00000420743.6:ENST00000554539.5:ENST00000554383.5:ENST00000555215.5:ENST00000555137.5:ENST00000554891.5:ENST00000556226.5:ENST00000555176.5:ENST00000553614.5:ENST00000557336.1:ENST00000557768.1:ENST00000557033.1:ENST00000555127.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	22	216	2	1.36368	1.99922	2.63476	0.0160759	1.01001e-4	0.109464	0.00906611
chr14	102594724	102594824	5822554	0	+	0.47	(0.44,0.476]	chr14	552490	10	INTRON	INTRON	RCOR1	ENSG00000089902.10	ENST00000262241.7	protein_coding	protein_coding	protein_coding	protein_coding	7	70	2	1.96805	1.9991949999999998	2.03034	0.0173569	0.0109533	0.104189	0.0925675
chr20	35737267	35737367	7336507	0	-	0.63	(0.57,1]	chr20	747495	3	INTRON	INTRON	RBM39	ENSG00000131051.24	ENST00000253363.11:ENST00000639702.1:ENST00000656873.1:ENST00000463004.5:ENST00000361162.10:ENST00000461283.5:ENST00000403542.6:ENST00000338163.10:ENST00000528062.7:ENST00000429968.5:ENST00000444878.5:ENST00000665058.1:ENST00000374038.7:ENST00000412738.5:ENST00000434927.5:ENST00000425184.5:ENST00000481037.5:ENST00000455343.5:ENST00000416108.5:ENST00000426951.5:ENST00000477334.1:ENST00000442447.5:ENST00000449489.5:ENST00000433027.5:ENST00000487604.1:ENST00000453310.5:ENST00000416529.5:ENST00000397370.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	51	2	1.89283	1.999175	2.10552	0.00863312	0.00330145	0.078644	0.0527031
chr17	64517028	64517128	6662000	0	+	0.39	(0.378,0.408]	chr17	650210	2	SS5_PROX	SS5_PROX:INTRON	CEP95	ENSG00000258890.8	ENST00000579860.5:ENST00000580188.1:ENST00000556440.7:ENST00000553956.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	15	151	2	1.67146	1.999165	2.32687	0.0102573	8.01098e-4	0.0850389	0.0258804
chr19	36225461	36225560	7057528	0	+	0.383838	(0.378,0.408]	chr19	704664	69	INTRON	INTRON	ZNF146	ENSG00000167635.12	ENST00000456324.5:ENST00000591063.5:ENST00000443387.3:ENST00000586094.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	113	2	1.87402	1.99913	2.12424	0.0121355	0.00224944	0.0910127	0.0435778
chr3	48071483	48071583	1687326	0	-	0.46	(0.44,0.476]	chr3	172280	552	INTRON	INTRON	MAP4	ENSG00000047849.22	ENST00000395734.7:ENST00000426837.6:ENST00000360240.10:ENST00000423088.5:ENST00000439356.2:ENST00000468075.2	protein_coding	protein_coding	protein_coding	protein_coding	9	85	2	1.64357	1.999015	2.35446	0.0177224	0.00536475	0.11319	0.0642754
chr2	10317379	10317479	691773	0	+	0.4	(0.378,0.408]	chr2	81125	131	INTRON	INTRON	HPCAL1	ENSG00000115756.13	ENST00000423674.5:ENST00000307845.8:ENST00000381765.7	protein_coding	protein_coding	protein_coding	protein_coding	9	93	2	1.98727	1.99899	2.01071	0.0111045	0.00639052	0.0876025	0.0726555
chr19	343081	343180	7109601	0	-	0.494949	(0.476,0.515]	chr19	713832	26	INTRON	INTRON	MIER2	ENSG00000105556.12	ENST00000264819.7:ENST00000635755.1:ENST00000586994.7:ENST00000587966.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	42	2	1.86492	1.99898	2.13304	0.0550347	0.024866	0.165463	0.132101
chr5	112863649	112863744	2453019	0	+	0.484211	(0.476,0.515]	chr5	235027	7	INTRON	INTRON	SRP19	ENSG00000153037.15	ENST00000503445.5:ENST00000505459.6:ENST00000506997.2:ENST00000391338.3:ENST00000282999.7:ENST00000515463.1:ENST00000621420.5:ENST00000515755.1:ENST00000445150.3:ENST00000506987.1:ENST00000509024.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	42	2	1.86492	1.99898	2.13304	0.0550347	0.024866	0.165463	0.132101
chrX	101044654	101044754	7855210	0	-	0.5	(0.476,0.515]	chrX	800835	6	INTRON	INTRON	TRMT2B:TRMT2B-AS1	ENSG00000188917.15:ENSG00000225839.2	ENST00000545398.5:ENST00000372936.4:ENST00000372939.5:ENST00000372935.5:ENST00000478422.1:ENST00000443801.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA:processed_transcript	4	42	2	1.86492	1.99898	2.13304	0.0550347	0.024866	0.165463	0.132101
chr16	85570049	85570149	6415532	0	+	0.59	(0.57,1]	chr16	615470	133	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	7	37	2	1.62421	1.998935	2.37366	0.0376752	0.00373392	0.156361	0.0535844
chr7	100097100	100097200	3585324	0	-	0.38	(0.378,0.408]	chr7	334120	4	SS5_PROX	SS5_PROX:INTRON	MCM7	ENSG00000166508.18	ENST00000303887.10:ENST00000489841.5:ENST00000621318.4:ENST00000354230.7:ENST00000343023.10:ENST00000485286.5:ENST00000491245.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	97	2	1.9515	1.99886	2.04622	0.0149927	0.00641948	0.107704	0.0695904
chr11	65430461	65430561	4805847	0	+	0.37	(0.35,0.378]	chr11	446554	78	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	21	212	2	1.812	1.9988299999999999	2.18566	0.00202316	0.00182142	0.0416117	0.0385749
chr17	30127158	30127258	6587492	0	+	0.29	(0.28,0.32]	chr17	640557	86	INTRON	INTRON	NSRP1	ENSG00000126653.18	ENST00000540900.7:ENST00000584423.5:ENST00000612959.4:ENST00000247026.10:ENST00000577289.6:ENST00000584154.5:ENST00000394826.8:ENST00000479218.6:ENST00000475652.5:ENST00000584317.5:ENST00000583301.5:ENST00000585881.5:ENST00000467446.6:ENST00000580103.6:ENST00000581048.5:ENST00000588614.1:ENST00000589608.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	54	2	1.91611	1.9988000000000001	2.08149	0.0539102	0.031124	0.164153	0.143644
chr6	16130156	16130256	2825783	0	+	0.42	(0.408,0.44]	chr6	265304	2	SS3_PROX	SS3_PROX:INTRON	MYLIP	ENSG00000007944.15	ENST00000356840.8:ENST00000349606.4	protein_coding	protein_coding	protein_coding	protein_coding	6	63	2	1.8749	1.9987499999999998	2.1226	0.0264246	0.012812	0.133676	0.0926667
chr9	112254878	112254977	4317168	0	-	0.373737	(0.35,0.378]	chr9	397054	17	INTRON	INTRON	PTBP3	ENSG00000119314.16	ENST00000334318.10:ENST00000458258.5:ENST00000374257.6:ENST00000374255.6:ENST00000343327.6	protein_coding	protein_coding	protein_coding	protein_coding	4	47	2	1.90405	1.9986799999999998	2.09331	0.0482651	0.0315717	0.171852	0.13151
chr15	64504757	64504857	6044531	0	+	0.5	(0.476,0.515]	chr15	575696	18	INTRON	INTRON	ZNF609	ENSG00000180357.10	ENST00000326648.5:ENST00000558680.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	86	2	1.94021	1.998675	2.05714	0.0156961	0.00523626	0.101453	0.0656295
chr1	245949443	245949543	675123	0	-	0.47	(0.44,0.476]	chr1	79699	188	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000366517.5:ENST00000490107.6:ENST00000493441.5:ENST00000488153.5:ENST00000492487.5:ENST00000391836.3:ENST00000464398.1:ENST00000453676.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	51	2	1.66462	1.9986700000000002	2.33272	0.0520247	0.0129984	0.159508	0.0991656
chr2	20348906	20349006	1076768	0	-	0.33	(0.32,0.35]	chr2	115047	155	INTRON	INTRON	PUM2	ENSG00000055917.16	ENST00000361078.7:ENST00000442400.5:ENST00000420234.5:ENST00000429419.6:ENST00000432105.5:ENST00000446940.5:ENST00000424110.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	105	2	1.91908	1.9986449999999998	2.07821	0.0169079	0.00473999	0.103859	0.0634645
chr17	64501632	64501725	6815824	0	-	0.483871	(0.476,0.515]	chr17	673799	5	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DDX5	ENSG00000108654.16	ENST00000225792.10:ENST00000678890.1:ENST00000676601.1:ENST00000676575.1:ENST00000676969.1:ENST00000678810.1:ENST00000585317.2:ENST00000678110.1:ENST00000580026.6:ENST00000678757.1:ENST00000676581.1:ENST00000676785.1:ENST00000585111.2:ENST00000577922.6:ENST00000450599.7:ENST00000678814.1:ENST00000677726.1:ENST00000583212.2:ENST00000579461.2:ENST00000540698.6:ENST00000581230.5:ENST00000581693.5:ENST00000582326.2:ENST00000578491.2:ENST00000578804.5:ENST00000578758.5:ENST00000581237.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	99	2	1.55902	1.998615	2.43821	0.0242957	0.00177508	0.130919	0.0378678
chr2	147970940	147971040	1242273	0	-	0.45	(0.44,0.476]	chr2	131858	117	INTRON	INTRON	ORC4	ENSG00000115947.14	ENST00000392857.10:ENST00000264169.6:ENST00000536575.5:ENST00000535373.5:ENST00000540442.5:ENST00000461711.5:ENST00000496670.6:ENST00000490200.5:ENST00000416719.5:ENST00000457954.5:ENST00000440042.1:ENST00000495601.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	12	117	2	1.49345	1.9984799999999998	2.50351	0.0271885	5.11411e-4	0.123904	0.0203232
chr11	3755901	3756000	4894746	0	-	0.414141	(0.408,0.44]	chr11	458876	21	INTRON	INTRON	NUP98	ENSG00000110713.17	ENST00000359171.8:ENST00000324932.12:ENST00000650171.1:ENST00000355260.7:ENST00000397004.8:ENST00000397007.8:ENST00000527104.5:ENST00000529379.1:ENST00000397013.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	90	2	1.73532	1.9984600000000001	2.2616	0.0194186	0.00321416	0.109149	0.0523065
chr5	179615252	179615349	2779678	0	-	0.309278	(0.28,0.32]	chr5	262291	4	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HNRNPH1	ENSG00000169045.17	ENST00000329433.11:ENST00000393432.9:ENST00000356731.9:ENST00000442819.6:ENST00000502904.5:ENST00000514332.5:ENST00000515481.5:ENST00000510411.5:ENST00000510678.5:ENST00000523449.5:ENST00000524179.1:ENST00000519033.5:ENST00000521720.5:ENST00000502632.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	56	2	1.60333	1.9984000000000002	2.39347	0.0504457	0.0413158	0.161534	0.156383
chr1	32386085	32386181	415110	0	-	0.510417	(0.476,0.515]	chr1	50082	17	INTRON	INTRON	BSDC1	ENSG00000160058.19	ENST00000455895.7:ENST00000444377.5:ENST00000341071.11:ENST00000526031.5:ENST00000419121.6:ENST00000446293.6:ENST00000373520.8:ENST00000527513.5:ENST00000527163.5:ENST00000530485.1:ENST00000474414.5:ENST00000530876.5:ENST00000530753.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	97	2	1.76217	1.998285	2.2344	0.0111778	0.00432475	0.0937192	0.0579331
chr8	37890688	37890787	3935857	0	-	0.474747	(0.44,0.476]	chr8	360576	127	INTRON	INTRON	RAB11FIP1	ENSG00000156675.16	ENST00000330843.9:ENST00000287263.8:ENST00000522727.5	protein_coding	protein_coding	protein_coding	protein_coding	8	78	2	1.92621	1.9981849999999999	2.07016	0.0151815	0.00813281	0.0994339	0.0810802
chr1	1394799	1394893	359869	0	-	0.542553	(0.515,0.57]	chr1	41791	10	INTRON	INTRON	CCNL2	ENSG00000221978.13	ENST00000400809.8:ENST00000482621.5:ENST00000496007.5:ENST00000481223.6:ENST00000488340.5:ENST00000471930.5:ENST00000408918.8:ENST00000473872.5:ENST00000425598.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	42	2	1.38719	1.99809	2.60899	0.0540435	0.0232669	0.181713	0.118148
chr5	57238771	57238871	2358712	0	+	0.34	(0.32,0.35]	chr5	227598	12	INTRON	INTRON	GPBP1	ENSG00000062194.16	ENST00000424459.7:ENST00000514387.6:ENST00000506184.7:ENST00000511209.5:ENST00000264779.6:ENST00000513524.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	60	2	1.88909	1.99802	2.10695	0.0553737	0.0127483	0.165463	0.0987441
chr10	28547851	28547951	4413952	0	+	0.21	[0,0.28]	chr10	407148	94	INTRON	INTRON	WAC	ENSG00000095787.24	ENST00000680735.1:ENST00000375664.8:ENST00000428935.6:ENST00000651598.1:ENST00000628285.3:ENST00000681112.1:ENST00000679570.1:ENST00000375646.5:ENST00000354911.9:ENST00000347934.8:ENST00000420266.6:ENST00000651885.1:ENST00000651441.1:ENST00000679398.1:ENST00000424454.5:ENST00000442148.6:ENST00000448193.5:ENST00000414108.6:ENST00000679428.1:ENST00000439676.5:ENST00000345541.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	108	2	1.8602	1.99795	2.1357	0.0338175	0.0100208	0.134476	0.0880342
chr8	9777326	9777424	3701758	0	+	0.265306	[0,0.28]	chr8	343368	7	UTR3	UTR3:EXON_MRNA	TNKS	ENSG00000173273.16	ENST00000310430.11	protein_coding	protein_coding	protein_coding	protein_coding	8	115	2	1.8887	1.99794	2.10718	0.0187468	0.0123003	0.108861	0.0971033
chr17	70072327	70072426	6828171	0	-	0.515152	(0.476,0.515]	chr17	675005	183	INTRON	INTRON	ENSG00000230258	ENSG00000230258.6	ENST00000435112.5:ENST00000587325.1	lncRNA	lncRNA	lncRNA	lncRNA	14	135	2	1.93264	1.9979200000000001	2.0632	0.00364537	0.00293211	0.0535094	0.0496505
chr9	128272092	128272191	4358190	0	-	0.393939	(0.378,0.408]	chr9	400430	19	EXON_MRNA	EXON_MRNA:INTRON	GOLGA2	ENSG00000167110.19	ENST00000421699.8:ENST00000611957.5:ENST00000693185.1:ENST00000686291.1:ENST00000687179.1:ENST00000458730.3:ENST00000693047.1:ENST00000686884.1:ENST00000693180.1:ENST00000691040.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	68	2	1.36527	1.9979200000000001	2.63057	0.0587392	0.0053733	0.189982	0.0642754
chr5	28840839	28840939	2330158	0	+	0.25	[0,0.28]	chr5	225135	303	INTRON	INTRON	LINC02109	ENSG00000259786.7	ENST00000658190.1	lncRNA	lncRNA	lncRNA	lncRNA	6	86	2	1.43498	1.997855	2.56073	0.0775714	0.00743095	0.196285	0.0772645
chr1	23979317	23979410	402161	0	-	0.354839	(0.35,0.378]	chr1	48302	1	INTRON	INTRON	SRSF10	ENSG00000188529.15	ENST00000492112.3:ENST00000344989.10:ENST00000341154.10:ENST00000453840.7:ENST00000484146.6:ENST00000473858.5:ENST00000374452.9:ENST00000374453.7:ENST00000343255.9:ENST00000495785.1:ENST00000485292.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	11	125	2	1.85092	1.997835	2.14475	0.0114682	0.0030207	0.0956037	0.0493883
chr2	107704019	107704119	1205589	0	-	0.33	(0.32,0.35]	chr2	128526	3	INTRON	INTRON	LINC01885:ENSG00000286769	ENSG00000237880.2:ENSG00000286769.1	ENST00000654481.1:ENST00000669817.1	lncRNA	lncRNA	lncRNA	lncRNA	13	142	2	1.48897	1.99782	2.50667	0.0232049	0.00118337	0.118148	0.031662
chr4	1940560	1940657	1911279	0	+	0.371134	(0.35,0.378]	chr4	191788	9	UTR3	UTR3:EXON_MRNA:INTRON	NSD2	ENSG00000109685.19	ENST00000508803.6:ENST00000514045.5:ENST00000398261.6:ENST00000382891.9:ENST00000353275.9:ENST00000382892.6:ENST00000382895.7:ENST00000312087.10:ENST00000420906.6:ENST00000503128.5:ENST00000677559.1:ENST00000512700.2:ENST00000678714.1:ENST00000511904.1:ENST00000513726.5:ENST00000678128.1:ENST00000482415.6:ENST00000514329.5:ENST00000502425.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	14	152	2	1.70193	1.997815	2.2937	0.00896527	0.0015427	0.0849778	0.0357086
chr22	21426731	21426830	7481266	0	+	0.454545	(0.44,0.476]	chr22	763209	56	INTRON	INTRON	HIC2	ENSG00000169635.10	ENST00000407464.7:ENST00000407598.2	protein_coding	protein_coding	protein_coding	protein_coding	19	173	2	1.16832	1.99781	2.8273	0.0428659	3.98788e-5	0.148082	0.00512679
chr16	29522474	29522574	6470790	0	-	0.51	(0.476,0.515]	chr16	625147	166	INTRON	INTRON	ENSG00000288632	ENSG00000288632.1	ENST00000675579.1	lncRNA	lncRNA	lncRNA	lncRNA	10	97	2	1.65322	1.997795	2.34237	0.0190363	0.00223831	0.108861	0.0435144
chr7	157205300	157205400	3454616	0	+	0.33	(0.32,0.35]	chr7	322965	31	INTRON	INTRON	UBE3C	ENSG00000009335.18	ENST00000348165.10	protein_coding	protein_coding	protein_coding	protein_coding	9	101	2	1.93022	1.9977749999999999	2.06533	0.0174225	0.00608869	0.10453	0.0705469
chr16	28952995	28953092	6334823	0	+	0.453608	(0.44,0.476]	chr16	606661	4	INTRON	INTRON	NFATC2IP	ENSG00000176953.13	ENST00000564978.5:ENST00000320805.9:ENST00000562977.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	99	2	1.60853	1.997755	2.38698	0.020211	0.00229045	0.121301	0.0427959
chr11	66655867	66655967	4811209	0	+	0.38	(0.378,0.408]	chr11	447918	36	INTRON	INTRON	RBM4	ENSG00000173933.21	ENST00000396053.9	protein_coding	protein_coding	protein_coding	protein_coding	9	93	2	1.95534	1.997675	2.04001	0.00996995	0.00731058	0.08427	0.076234
chr2	86775282	86775381	824041	0	+	0.252525	[0,0.28]	chr2	92083	20	UTR3	UTR3:EXON_MRNA	RMND5A	ENSG00000153561.13	ENST00000283632.5	protein_coding	protein_coding	protein_coding	protein_coding	12	166	2	1.65268	1.9976500000000001	2.34262	0.0141631	0.00507543	0.103627	0.0623153
chr17	61815752	61815852	6808456	0	-	0.33	(0.32,0.35]	chr17	672605	66	INTRON	INTRON	BRIP1	ENSG00000136492.10	ENST00000259008.7:ENST00000682755.1:ENST00000682453.1:ENST00000683039.1:ENST00000682989.1:ENST00000682589.1:ENST00000683235.1:ENST00000682477.1:ENST00000684584.1:ENST00000577598.5:ENST00000682066.1:ENST00000584322.2:ENST00000683381.1:ENST00000579028.2:ENST00000682611.1:ENST00000683692.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	50	2	1.95271	1.9975399999999999	2.04237	0.0431213	0.0375542	0.162255	0.140222
chr7	73552066	73552166	3555268	0	-	0.34	(0.32,0.35]	chr7	330848	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	BCL7B	ENSG00000106635.8	ENST00000223368.7:ENST00000411832.5:ENST00000482231.5:ENST00000454871.5:ENST00000463858.5:ENST00000448175.5:ENST00000455335.2:ENST00000464288.5:ENST00000416906.2:ENST00000493592.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	50	2	1.95271	1.9975399999999999	2.04237	0.0431213	0.0375542	0.162255	0.140222
chr12	56341994	56342093	5334672	0	-	0.50505	(0.476,0.515]	chr12	509746	5	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	STAT2	ENSG00000170581.14	ENST00000314128.9:ENST00000556539.5:ENST00000651301.1:ENST00000651915.1:ENST00000651934.1:ENST00000652091.1:ENST00000651805.1:ENST00000651078.1:ENST00000650805.1:ENST00000652741.1:ENST00000652624.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	42	2	1.79693	1.9975100000000001	2.19809	0.0649782	0.020317	0.179417	0.121522
chr22	19427699	19427798	7554385	0	-	0.50505	(0.476,0.515]	chr22	772317	166	INTRON	INTRON	HIRA:C22orf39	ENSG00000100084.14:ENSG00000242259.9	ENST00000263208.5:ENST00000340170.8:ENST00000509549.5:ENST00000464189.5:ENST00000452818.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	61	2	1.86182	1.99743	2.13304	0.024866	0.0178986	0.132101	0.106365
chr19	55019623	55019723	7100354	0	+	0.39	(0.378,0.408]	chr19	712212	122	INTRON	INTRON	GP6-AS1	ENSG00000267265.6	ENST00000593060.5:ENST00000586845.1	lncRNA	lncRNA	lncRNA	lncRNA	6	62	2	1.94681	1.997395	2.04798	0.0457723	0.00809949	0.149888	0.0808864
chr7	155778026	155778125	3453256	0	+	0.353535	(0.35,0.378]	chr7	322755	30	UTR3	UTR3:EXON_MRNA	RBM33	ENSG00000184863.11	ENST00000401878.8:ENST00000341148.7	protein_coding	protein_coding	protein_coding	protein_coding	13	130	2	1.56109	1.997395	2.4337	0.0134069	0.00216531	0.101104	0.0417866
chr3	196752747	196752847	1595622	0	+	0.48	(0.476,0.515]	chr3	165300	122	INTRON	INTRON	PAK2	ENSG00000180370.10	ENST00000327134.7	protein_coding	protein_coding	protein_coding	protein_coding	4	42	2	1.92984	1.997375	2.06491	0.0466474	0.0304733	0.151522	0.143385
chr3	31533986	31534086	1391407	0	+	0.35	(0.32,0.35]	chr3	145685	3	SS5_PROX	SS5_PROX:INTRON	STT3B	ENSG00000163527.10	ENST00000453168.5:ENST00000295770.4:ENST00000423527.5:ENST00000462235.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	44	2	1.61669	1.997315	2.37794	0.0578816	0.0498601	0.188651	0.156383
chr9	120790435	120790533	4335437	0	-	0.44898	(0.44,0.476]	chr9	398263	18	INTRON	INTRON	FBXW2	ENSG00000119402.18	ENST00000684405.1:ENST00000684001.1:ENST00000684047.1:ENST00000608872.6:ENST00000453291.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	13	126	2	1.73751	1.9972750000000001	2.25704	0.0088224	0.0018274	0.0792321	0.0396683
chr6	35365231	35365331	2852205	0	+	0.49	(0.476,0.515]	chr6	269491	177	INTRON	INTRON	PPARD	ENSG00000112033.14	ENST00000418635.6:ENST00000448077.6:ENST00000360694.8:ENST00000311565.4:ENST00000337400.6	protein_coding	protein_coding	protein_coding	protein_coding	5	44	2	1.58842	1.9972500000000002	2.40608	0.0425709	0.0406588	0.161534	0.148082
chr18	37162179	37162279	6896182	0	+	0.37	(0.35,0.378]	chr18	683279	14	INTRON	INTRON	KIAA1328	ENSG00000150477.15	ENST00000592611.5:ENST00000280020.10:ENST00000590617.5:ENST00000587139.5:ENST00000591619.5:ENST00000586135.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	48	2	1.59505	1.99722	2.39939	0.0458078	0.040425	0.161534	0.149888
chr3	17732544	17732644	1630333	0	-	0.48	(0.476,0.515]	chr3	168275	303	INTRON	INTRON	TBC1D5	ENSG00000131374.15	ENST00000253692.11:ENST00000696125.1:ENST00000414318.2:ENST00000429383.8:ENST00000415814.6:ENST00000452492.6:ENST00000412981.5:ENST00000428355.5:ENST00000425944.5:ENST00000430169.5:ENST00000445294.5:ENST00000414349.5:ENST00000443499.6:ENST00000444756.5:ENST00000497531.5:ENST00000443386.5:ENST00000446863.5:ENST00000444471.5:ENST00000481396.5:ENST00000423331.6:ENST00000485432.1:ENST00000471679.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	85	2	1.50655	1.99722	2.48789	0.0316424	0.00256502	0.13151	0.0466761
chr18	209072	209171	6855345	0	+	0.333333	(0.32,0.35]	chr18	679566	40	INTRON	INTRON	USP14	ENSG00000101557.15	ENST00000582707.5:ENST00000400266.7:ENST00000261601.8:ENST00000578942.5:ENST00000383589.6:ENST00000578786.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	57	2	1.42176	1.997195	2.57263	0.0511006	0.0312297	0.176696	0.13151
chr5	36872647	36872746	2601847	0	-	0.232323	[0,0.28]	chr5	247327	14	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	NIPBL-DT	ENSG00000285967.1	ENST00000647750.1:ENST00000649921.1:ENST00000647824.1	lncRNA	lncRNA	lncRNA	lncRNA	8	116	2	1.65319	1.997155	2.34112	0.0275612	0.0089545	0.137011	0.0800073
chr6	36597652	36597744	2854448	0	+	0.456522	(0.44,0.476]	chr6	269778	3	INTRON	INTRON	SRSF3	ENSG00000112081.17	ENST00000613941.4:ENST00000373715.11:ENST00000339436.11:ENST00000477442.6:ENST00000620941.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	65	2	1.93084	1.997125	2.06341	0.0443175	0.00871005	0.162302	0.0788605
chr19	32712343	32712439	7049883	0	+	0.4375	(0.408,0.44]	chr19	702971	5	UTR3	UTR3:EXON_MRNA	NUDT19	ENSG00000213965.4	ENST00000397061.4	protein_coding	protein_coding	protein_coding	protein_coding	24	236	2	1.93167	1.997115	2.06256	0.00165471	7.20838e-4	0.0369207	0.0245203
chr16	89485441	89485541	6543551	0	-	0.43	(0.408,0.44]	chr16	634281	538	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	14	137	2	1.69275	1.9970750000000002	2.3014	0.0107729	8.86465e-4	0.0868048	0.0271952
chr17	59626846	59626946	6641632	0	+	0.39	(0.378,0.408]	chr17	648527	63	INTRON	INTRON	CLTC	ENSG00000141367.12	ENST00000621829.4:ENST00000393043.5:ENST00000269122.8:ENST00000580081.1:ENST00000579456.5:ENST00000584313.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	102	2	1.91906	1.997065	2.07507	0.0153989	0.00284959	0.100621	0.0494641
chr14	51255401	51255499	5716435	0	+	0.285714	(0.28,0.32]	chr14	542907	10	UTR3	UTR3:EXON_MRNA	TMX1	ENSG00000139921.13	ENST00000457354.7:ENST00000556683.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	140	2	1.79593	1.9970599999999998	2.19819	0.0147274	0.00307394	0.0983813	0.0510029
chrX	71550321	71550421	7680121	0	+	0.3	(0.28,0.32]	chrX	786405	19	INTRON	INTRON	OGT	ENSG00000147162.14	ENST00000373719.8:ENST00000488174.5:ENST00000373701.7:ENST00000455587.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	13	176	2	1.36059	1.9970400000000001	2.63349	0.057669	1.41016e-4	0.167723	0.0102551
chr16	23422968	23423066	6463780	0	-	0.459184	(0.44,0.476]	chr16	623765	38	INTRON	INTRON	COG7	ENSG00000168434.13	ENST00000307149.10	protein_coding	protein_coding	protein_coding	protein_coding	9	89	2	1.96975	1.99698	2.02421	0.0123514	0.00536295	0.0914865	0.0663076
chr12	76077436	76077536	5370153	0	-	0.42	(0.408,0.44]	chr12	512329	28	INTRON	INTRON	NAP1L1	ENSG00000187109.15	ENST00000618691.5:ENST00000393263.7:ENST00000431879.7:ENST00000547773.5:ENST00000544816.5:ENST00000542344.5:ENST00000535020.6:ENST00000549596.5:ENST00000552342.5:ENST00000548044.5:ENST00000550934.5:ENST00000551992.5:ENST00000548273.5:ENST00000551600.5:ENST00000547704.5:ENST00000549988.5:ENST00000547479.5:ENST00000549479.1:ENST00000551500.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	71	2	1.83501	1.996975	2.15894	0.0323448	0.00504142	0.133003	0.0646039
chr6	85630887	85630987	3151326	0	-	0.41	(0.408,0.44]	chr6	293889	64	INTRON	INTRON	ENSG00000271793:SYNCRIP	ENSG00000271793.2:ENSG00000135316.19	ENST00000682083.1:ENST00000683074.1:ENST00000681965.1:ENST00000682504.1:ENST00000682106.1:ENST00000683364.1:ENST00000683436.1:ENST00000684220.1:ENST00000683909.1:ENST00000684462.1:ENST00000616122.5:ENST00000678528.1:ENST00000676637.1:ENST00000677771.1:ENST00000355238.11:ENST00000678878.1:ENST00000677481.1:ENST00000677646.1:ENST00000676630.1:ENST00000678618.1:ENST00000676542.1:ENST00000677059.1:ENST00000444272.2:ENST00000678899.1:ENST00000369622.8:ENST00000678355.1:ENST00000676688.1:ENST00000677514.1:ENST00000678816.1:ENST00000678930.1:ENST00000678589.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	111	2	1.96803	1.9969700000000001	2.02591	0.00573171	0.00531945	0.0660391	0.0657377
chr4	98925772	98925871	2208489	0	-	0.383838	(0.378,0.408]	chr4	216184	155	INTRON	INTRON	EIF4E	ENSG00000151247.13	ENST00000450253.7:ENST00000280892.10:ENST00000515638.5:ENST00000504432.5:ENST00000511644.5:ENST00000505992.1:ENST00000507665.5:ENST00000504472.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	53	2	1.58349	1.9969299999999999	2.41037	0.0653091	0.0100185	0.180158	0.0880217
chr2	46624921	46625020	770564	0	+	0.333333	(0.32,0.35]	chr2	86971	8	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	CRIPT	ENSG00000119878.6	ENST00000486447.1:ENST00000238892.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	76	2	1.46273	1.9969000000000001	2.53107	0.0451962	0.00860484	0.163755	0.0784134
chr8	129527568	129527668	4060558	0	-	0.49	(0.476,0.515]	chr8	369648	170	INTRON	INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1:ENST00000676273.1:ENST00000667643.1:ENST00000668791.1:ENST00000663716.1:ENST00000663572.1:ENST00000676148.1:ENST00000667962.1:ENST00000674877.1:ENST00000675316.1:ENST00000674656.1:ENST00000446592.7:ENST00000667341.1:ENST00000675186.1:ENST00000652971.1:ENST00000661447.1:ENST00000674863.1:ENST00000675498.1:ENST00000675527.1:ENST00000676108.1:ENST00000657647.1:ENST00000675589.1:ENST00000675913.1:ENST00000675109.1:ENST00000671632.1:ENST00000671311.1:ENST00000676099.1:ENST00000660652.1:ENST00000675522.1:ENST00000675183.1:ENST00000658861.1:ENST00000663991.1:ENST00000675044.1:ENST00000675435.1:ENST00000674639.1:ENST00000676069.1:ENST00000675532.1:ENST00000674762.1:ENST00000523151.6:ENST00000675948.1:ENST00000665364.1:ENST00000657251.1:ENST00000675166.1:ENST00000674883.1:ENST00000675867.1:ENST00000674580.1:ENST00000675393.1:ENST00000520048.1:ENST00000674906.1:ENST00000676030.1:ENST00000670588.1:ENST00000675072.1:ENST00000664936.1:ENST00000652914.1:ENST00000657069.1	lncRNA	lncRNA	lncRNA	lncRNA	12	118	2	1.89129	1.9968750000000002	2.10246	0.00569336	0.00381269	0.065612	0.0562562
chr3	25749602	25749701	1642498	0	-	0.444444	(0.44,0.476]	chr3	168658	88	INTRON	INTRON	NGLY1	ENSG00000151092.18	ENST00000280700.10:ENST00000428257.5:ENST00000675217.1:ENST00000676225.1:ENST00000493324.5:ENST00000396649.7:ENST00000675178.1:ENST00000675680.1:ENST00000308710.9:ENST00000280699.13:ENST00000674841.1:ENST00000675234.1:ENST00000463611.2:ENST00000417874.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	70	2	1.88483	1.996875	2.10892	0.0149825	0.0132897	0.107704	0.0944742
chr19	11111739	11111839	7017051	0	+	0.61	(0.57,1]	chr19	697463	1	SS5_PROX	SS5_PROX:INTRON	LDLR	ENSG00000130164.14	ENST00000557933.5:ENST00000558518.6:ENST00000545707.5:ENST00000535915.5:ENST00000455727.6:ENST00000558013.5:ENST00000252444.9:ENST00000560467.1:ENST00000560173.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	24	2	1.46969	1.99687	2.52405	0.0586892	0.0263139	0.167915	0.133676
chr1	92731503	92731603	507632	0	-	0.36	(0.35,0.378]	chr1	59878	264	INTRON	INTRON	EVI5	ENSG00000067208.16	ENST00000370331.5:ENST00000540033.2:ENST00000684568.2:ENST00000474806.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	64	2	1.90041	1.9968599999999999	2.09331	0.0315717	0.0145936	0.13151	0.105992
chr2	68209915	68210014	1146096	0	-	0.363636	(0.35,0.378]	chr2	122389	209	INTRON	INTRON	PPP3R1	ENSG00000221823.11	ENST00000234310.8:ENST00000409752.5:ENST00000409377.1	protein_coding	protein_coding	protein_coding	protein_coding	6	64	2	1.90041	1.9968599999999999	2.09331	0.0315717	0.0145936	0.13151	0.105992
chr5	53937819	53937919	2617182	0	-	0.47	(0.44,0.476]	chr5	248835	258	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	58	2	1.70242	1.99684	2.29126	0.0282713	0.0165638	0.137721	0.102621
chr17	62035062	62035162	6810577	0	-	0.42	(0.408,0.44]	chr17	672941	2	SS5_PROX	SS5_PROX:INTRON	MED13	ENSG00000108510.10	ENST00000397786.7	protein_coding	protein_coding	protein_coding	protein_coding	5	52	2	1.81572	1.9967800000000002	2.17784	0.0626779	0.00916282	0.175915	0.0855292
chr17	59840106	59840204	6643736	0	+	0.438776	(0.408,0.44]	chr17	648787	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	VMP1	ENSG00000062716.13	ENST00000262291.9:ENST00000591782.1:ENST00000588617.1:ENST00000592790.1:ENST00000587470.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	26	234	2	1.65582	1.996775	2.33773	0.00280461	5.28147e-4	0.0488779	0.0211857
chrX	66163276	66163376	7672664	0	+	0.37	(0.35,0.378]	chrX	785241	4	SS5_PROX	SS5_PROX:INTRON	HEPH	ENSG00000089472.18	ENST00000519389.6	protein_coding	protein_coding	protein_coding	protein_coding	6	64	2	1.44934	1.996775	2.54421	0.0658369	0.00630238	0.181518	0.0722266
chr4	126630086	126630186	2237010	0	-	0.4	(0.378,0.408]	chr4	219023	1646	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	8	76	2	1.83034	1.996685	2.16303	0.0252473	0.00851588	0.12011	0.0833995
chr6	34377665	34377765	3084624	0	-	0.53	(0.515,0.57]	chr6	288633	353	INTRON	INTRON	NUDT3:RPS10-NUDT3	ENSG00000272325.2:ENSG00000270800.3	ENST00000607016.2:ENST00000639725.1:ENST00000639877.1:ENST00000605528.2	protein_coding	protein_coding	protein_coding	protein_coding	5	39	2	1.43029	1.9966750000000002	2.56306	0.0645632	0.0247751	0.179192	0.131869
chr4	165332642	165332740	2079680	0	+	0.336735	(0.32,0.35]	chr4	205560	42	INTRON	INTRON	MSMO1	ENSG00000052802.13	ENST00000507013.5:ENST00000261507.11:ENST00000393766.6:ENST00000504317.1:ENST00000505270.1	protein_coding	protein_coding	protein_coding	protein_coding	5	51	2	1.54741	1.9966050000000002	2.4458	0.0473733	0.0425977	0.169265	0.148082
chr22	19513851	19513950	7477188	0	+	0.373737	(0.35,0.378]	chr22	762458	48	INTRON	INTRON	CDC45	ENSG00000093009.11	ENST00000407835.6:ENST00000437685.6:ENST00000438587.6:ENST00000672837.1:ENST00000263201.7:ENST00000404724.7:ENST00000471470.1:ENST00000671972.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	68	2	1.92704	1.9965800000000002	2.06612	0.0228255	0.0164908	0.125469	0.102419
chr6	13680704	13680804	3058914	0	-	0.41	(0.408,0.44]	chr6	284542	215	INTRON	INTRON	RANBP9	ENSG00000010017.13	ENST00000011619.6	protein_coding	protein_coding	protein_coding	protein_coding	11	111	2	1.73753	1.996445	2.25536	0.0275537	7.46238e-4	0.123904	0.0250238
chr1	108323000	108323100	176867	0	+	0.45	(0.44,0.476]	chr1	19165	84	INTRON	INTRON	SLC25A24P1	ENSG00000241361.8	ENST00000411846.6:ENST00000434803.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	6	59	2	1.43625	1.9963700000000002	2.55649	0.063142	0.00670547	0.197183	0.0707084
chr19	57293004	57293101	7103657	0	+	0.350515	(0.35,0.378]	chr19	712862	9	UTR3	UTR3:EXON_MRNA	ZNF460	ENSG00000197714.9	ENST00000360338.4	protein_coding	protein_coding	protein_coding	protein_coding	16	168	2	1.93897	1.9963600000000001	2.05375	0.0071554	0.00105691	0.0723634	0.0299563
chr4	70934027	70934127	1970822	0	+	0.31	(0.28,0.32]	chr4	197571	311	INTRON	INTRON	MOB1B	ENSG00000173542.9	ENST00000502869.5:ENST00000509041.5:ENST00000309395.7:ENST00000396051.2:ENST00000511449.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	11	140	2	1.78733	1.9963450000000003	2.20536	0.0276087	0.00137274	0.123904	0.0340241
chr16	9100487	9100586	6285460	0	+	0.40404	(0.378,0.408]	chr16	601924	71	INTRON	INTRON	C16orf72	ENSG00000182831.12	ENST00000327827.12:ENST00000574285.2	protein_coding	protein_coding	protein_coding	protein_coding	10	96	2	1.42854	1.996335	2.56413	0.0310699	0.0024299	0.143579	0.0444645
chr15	58882156	58882253	6193584	0	-	0.391753	(0.378,0.408]	chr15	590010	17	INTRON	INTRON	SLTM	ENSG00000137776.17	ENST00000380516.7:ENST00000432750.5:ENST00000560494.1:ENST00000492526.5:ENST00000493062.5:ENST00000557924.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	73	2	1.89052	1.99632	2.10212	0.0148147	0.0141232	0.106702	0.0959618
chr17	31949482	31949581	6595802	0	+	0.353535	(0.35,0.378]	chr17	641554	14	INTRON	INTRON	SUZ12	ENSG00000178691.11	ENST00000322652.10:ENST00000580398.1	protein_coding	protein_coding	protein_coding	protein_coding	8	88	2	1.90784	1.99627	2.0847	0.0165983	0.00719316	0.102621	0.0756118
chr1	246625917	246626016	350582	0	+	0.393939	(0.378,0.408]	chr1	40508	39	INTRON	INTRON	CNST	ENSG00000162852.14	ENST00000483271.1:ENST00000366513.9:ENST00000366512.7:ENST00000366511.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	53	2	1.78011	1.996245	2.21238	0.0356367	0.0218124	0.151629	0.11491
chr2	69831551	69831651	804765	0	+	0.41	(0.408,0.44]	chr2	89785	10	INTRON	INTRON	GMCL1	ENSG00000087338.5	ENST00000282570.4:ENST00000468386.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	52	2	1.6306	1.996225	2.36185	0.0544158	0.0133164	0.182272	0.094512
chr3	15841788	15841888	1624265	0	-	0.42	(0.408,0.44]	chr3	168034	271	INTRON	INTRON	ANKRD28	ENSG00000206560.12	ENST00000399451.6:ENST00000412318.5:ENST00000439830.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	52	2	1.6306	1.996225	2.36185	0.0544158	0.0133164	0.182272	0.094512
chr7	131434803	131434903	3417521	0	+	0.46	(0.44,0.476]	chr7	319237	53	INTRON	INTRON	MKLN1	ENSG00000128585.18	ENST00000421797.6:ENST00000352689.11:ENST00000494785.5:ENST00000458153.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	38	2	1.69402	1.99622	2.29842	0.0552483	0.0456129	0.165463	0.164236
chr10	73020590	73020690	4647072	0	-	0.3	(0.28,0.32]	chr10	427494	33	INTRON	INTRON	P4HA1	ENSG00000122884.13	ENST00000394890.7:ENST00000307116.6:ENST00000373008.6:ENST00000440381.5:ENST00000263556.3	protein_coding	protein_coding	protein_coding	protein_coding	12	144	2	1.65566	1.9962	2.33674	0.0123101	0.00413289	0.0971761	0.0566868
chr7	103353226	103353325	3373688	0	+	0.30303	(0.28,0.32]	chr7	315782	9	EXON_MRNA	EXON_MRNA:INTRON	PSMC2	ENSG00000161057.13	ENST00000678493.1:ENST00000457587.5:ENST00000679205.1:ENST00000679341.1:ENST00000435765.5:ENST00000679250.1:ENST00000679046.1:ENST00000292644.5:ENST00000677281.1:ENST00000425206.6:ENST00000678488.1:ENST00000677943.1:ENST00000677769.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	70	2	1.47751	1.996195	2.51488	0.0380957	0.0351404	0.149985	0.141678
chr22	21448021	21448119	7481483	0	+	0.632653	(0.57,1]	chr22	763220	14	UTR3	UTR3:EXON_MRNA	HIC2	ENSG00000169635.10	ENST00000407464.7:ENST00000407598.2:ENST00000443632.2	protein_coding	protein_coding	protein_coding	protein_coding	11	54	2	1.65102	1.9961849999999999	2.34135	0.0121756	0.00191867	0.0910127	0.0405205
chr3	12661623	12661719	1617408	0	-	0.510417	(0.476,0.515]	chr3	166999	4	UTR5	UTR5:EXON_MRNA:INTRON	RAF1	ENSG00000132155.14	ENST00000688543.1:ENST00000685348.1:ENST00000251849.9:ENST00000442415.7:ENST00000688444.1:ENST00000692093.1:ENST00000691724.1:ENST00000423275.6:ENST00000687326.1:ENST00000688803.1:ENST00000689876.1:ENST00000686455.1:ENST00000684903.1:ENST00000693312.1:ENST00000690460.1:ENST00000692773.1:ENST00000688625.1:ENST00000693664.1:ENST00000686762.1:ENST00000692311.1:ENST00000692558.1:ENST00000691779.1:ENST00000685738.1:ENST00000690397.1:ENST00000687923.1:ENST00000688269.1:ENST00000693705.1:ENST00000689097.1:ENST00000691899.1:ENST00000689914.1:ENST00000690625.1:ENST00000689389.1:ENST00000687257.1:ENST00000686409.1:ENST00000685653.1:ENST00000689540.1:ENST00000691396.1:ENST00000685437.1:ENST00000689418.1:ENST00000687940.1:ENST00000689481.1:ENST00000491290.2:ENST00000686479.1:ENST00000689033.1:ENST00000692777.1:ENST00000689226.1:ENST00000691718.1:ENST00000692959.1:ENST00000685740.1:ENST00000688753.1:ENST00000688779.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	15	139	2	1.46432	1.9960550000000001	2.52779	0.0164334	6.23394e-4	0.110001	0.0229194
chr3	47901457	47901556	1685609	0	-	0.494949	(0.476,0.515]	chr3	172201	88	INTRON	INTRON	MAP4	ENSG00000047849.22	ENST00000429422.5:ENST00000683076.1:ENST00000395734.7:ENST00000426837.6:ENST00000360240.10:ENST00000383736.3:ENST00000482752.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	58	2	1.4553	1.9960049999999998	2.53671	0.0623645	0.00624027	0.175357	0.0718843
chr4	126660776	126660876	2237317	0	-	0.37	(0.35,0.378]	chr4	219023	1953	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	14	126	2	1.47372	1.9960049999999998	2.51829	0.014478	0.00313284	0.10521	0.0499756
chr7	150279052	150279152	3673205	0	-	0.49	(0.476,0.515]	chr7	340876	296	INTRON	INTRON	ACTR3C	ENSG00000106526.11	ENST00000478393.5:ENST00000683684.1:ENST00000252071.8	protein_coding	protein_coding	protein_coding	protein_coding	10	97	2	1.99499	1.99599	1.99699	0.0110277	0.00408599	0.0873897	0.0581771
chr6	37295250	37295350	2855692	0	+	0.45	(0.44,0.476]	chr6	269985	35	INTRON	INTRON	TBC1D22B	ENSG00000065491.8	ENST00000373491.3	protein_coding	protein_coding	protein_coding	protein_coding	6	58	2	1.65297	1.9959799999999999	2.33899	0.0331814	0.0142027	0.145918	0.0959987
chr6	16268116	16268216	2826271	0	+	0.44	(0.408,0.44]	chr6	265366	96	INTRON	INTRON	GMPR	ENSG00000137198.10	ENST00000259727.5:ENST00000543191.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	43	2	1.93243	1.9959500000000001	2.05947	0.0441194	0.0333232	0.162255	0.134145
chr7	73204604	73204704	3331528	0	+	0.41	(0.408,0.44]	chr7	309850	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	GTF2IP4	ENSG00000233369.7	ENST00000544802.5:ENST00000453092.3	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript:transcribed_processed_pseudogene	9	86	2	1.86926	1.99593	2.1226	0.012812	0.00709955	0.0926667	0.0755905
chr2	171105670	171105770	1263545	0	-	0.41	(0.408,0.44]	chr2	133913	140	INTRON	INTRON	TLK1	ENSG00000198586.14	ENST00000431350.7:ENST00000360843.7:ENST00000359766.7:ENST00000521943.5:ENST00000409443.6:ENST00000413010.5:ENST00000470340.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	71	2	1.38001	1.995855	2.6117	0.0444754	0.00555224	0.162826	0.0648867
chr1	50945274	50945374	452106	0	-	0.43	(0.408,0.44]	chr1	54267	869	INTRON	INTRON	FAF1	ENSG00000185104.21	ENST00000396153.7:ENST00000487898.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	118	2	1.73272	1.99573	2.25874	0.0113502	0.00181031	0.0886611	0.0393822
chr17	62008686	62008783	6810304	0	-	0.402062	(0.378,0.408]	chr17	672913	13	INTRON	INTRON	MED13	ENSG00000108510.10	ENST00000397786.7	protein_coding	protein_coding	protein_coding	protein_coding	8	81	2	1.88928	1.9957000000000003	2.10212	0.0141232	0.00958693	0.0959618	0.0866052
chr9	123252850	123252950	4340324	0	-	0.44	(0.408,0.44]	chr9	398963	155	INTRON	INTRON	STRBP	ENSG00000165209.19	ENST00000348403.10:ENST00000360998.3:ENST00000407982.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	38	2	1.6306	1.9956650000000002	2.36073	0.0544158	0.0481658	0.182272	0.153019
chr1	11796810	11796899	378849	0	-	0.359551	(0.35,0.378]	chr1	44469	4	SS3_PROX	SS3_PROX:INTRON	MTHFR	ENSG00000177000.13	ENST00000376590.9:ENST00000376592.6:ENST00000376583.7:ENST00000376585.6:ENST00000641747.1:ENST00000641805.1:ENST00000641446.1:ENST00000423400.7:ENST00000641407.1:ENST00000641759.1:ENST00000641721.1:ENST00000376486.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	94	2	1.49914	1.99566	2.49218	0.0306686	0.00348124	0.143385	0.0521496
chr15	65763608	65763707	6209506	0	-	0.434343	(0.408,0.44]	chr15	592611	18	INTRON	INTRON	DENND4A	ENSG00000174485.16	ENST00000443035.8:ENST00000431932.6:ENST00000564674.5:ENST00000568515.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	15	132	2	1.05559	1.99549	2.93539	0.0715164	9.4061e-5	0.186294	0.00813008
chr12	69260990	69261088	5163729	0	+	0.265306	[0,0.28]	chr12	489042	4	INTRON	INTRON	CPSF6	ENSG00000111605.18	ENST00000435070.7:ENST00000650046.1:ENST00000456847.7:ENST00000266679.8:ENST00000551516.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	86	2	1.92964	1.99548	2.06132	0.0408268	0.0157154	0.1451	0.109464
chr3	14445716	14445783	1369832	0	+	0.447761	(0.44,0.476]	chr3	144339	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	SLC6A6	ENSG00000131389.18	ENST00000613060.4:ENST00000618278.4:ENST00000610642.4:ENST00000649500.1:ENST00000622186.5:ENST00000621751.4:ENST00000622176.4:ENST00000615188.1:ENST00000452775.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	15	146	2	1.71781	1.99545	2.27309	0.00956926	6.781e-4	0.0820838	0.0236375
chr10	86465979	86466079	4658798	0	-	0.37	(0.35,0.378]	chr10	429254	43	INTRON	INTRON	WAPL	ENSG00000062650.20	ENST00000298767.10:ENST00000372075.2	protein_coding	protein_coding	protein_coding	protein_coding	3	34	2	1.82887	1.995285	2.1617	0.0771502	0.0584878	0.196285	0.189395
chr2	46903765	46903865	1114320	0	-	0.36	(0.35,0.378]	chr2	119481	20	UTR3	UTR3:EXON_MRNA	MCFD2	ENSG00000180398.13	ENST00000444761.6:ENST00000409800.5:ENST00000409913.5:ENST00000319466.9:ENST00000409105.5:ENST00000649435.1	protein_coding	protein_coding	protein_coding	protein_coding	3	34	2	1.82887	1.995285	2.1617	0.0771502	0.0584878	0.196285	0.189395
chr4	126665574	126665674	2237365	0	-	0.37	(0.35,0.378]	chr4	219023	2001	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	3	34	2	1.82887	1.995285	2.1617	0.0771502	0.0584878	0.196285	0.189395
chr5	104201088	104201188	2442426	0	+	0.37	(0.35,0.378]	chr5	234410	958	INTRON	INTRON	LINC02163	ENSG00000251026.2	ENST00000662211.1:ENST00000666145.1	lncRNA	lncRNA	lncRNA	lncRNA	3	34	2	1.82887	1.995285	2.1617	0.0771502	0.0584878	0.196285	0.189395
chr6	124990495	124990595	2951754	0	+	0.37	(0.35,0.378]	chr6	277678	66	INTRON	INTRON	RNF217	ENSG00000146373.17	ENST00000521654.7:ENST00000560949.5:ENST00000519565.5:ENST00000454842.2:ENST00000368414.6:ENST00000519799.5:ENST00000359704.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	34	2	1.82887	1.995285	2.1617	0.0771502	0.0584878	0.196285	0.189395
chr7	158827830	158827925	3689797	0	-	0.357895	(0.35,0.378]	chr7	342425	3	INTRON	INTRON	ESYT2	ENSG00000117868.18	ENST00000251527.10:ENST00000275418.13:ENST00000652148.1:ENST00000497111.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	34	2	1.82887	1.995285	2.1617	0.0771502	0.0584878	0.196285	0.189395
chr19	1475611	1475708	7112137	0	-	0.474227	(0.44,0.476]	chr19	714475	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	C19orf25	ENSG00000119559.17	ENST00000588427.5:ENST00000585675.6:ENST00000436106.3:ENST00000588871.5:ENST00000427685.2:ENST00000586564.5:ENST00000592486.1:ENST00000592872.5:ENST00000651077.1:ENST00000588849.1:ENST00000590621.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	39	2	1.49942	1.99527	2.49112	0.0792118	0.0315968	0.199574	0.144381
chr3	21547294	21547394	1387381	0	+	0.45	(0.44,0.476]	chr3	145351	39	INTRON	INTRON	ZNF385D-AS1	ENSG00000225542.2	ENST00000662195.1:ENST00000412369.1	lncRNA	lncRNA	lncRNA	lncRNA	4	39	2	1.49942	1.99527	2.49112	0.0792118	0.0315968	0.199574	0.144381
chr1	75793189	75793285	144695	0	+	0.489583	(0.476,0.515]	chr1	16345	5	INTRON	INTRON	RABGGTB	ENSG00000137955.16	ENST00000496055.5:ENST00000319942.8:ENST00000471759.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	14	141	2	1.75592	1.9952549999999998	2.23459	0.00862128	0.00114776	0.0838846	0.0308671
chr1	212862733	212862831	309881	0	+	0.418367	(0.408,0.44]	chr1	35783	32	INTRON	INTRON	FLVCR1	ENSG00000162769.13	ENST00000366971.9:ENST00000419102.1	protein_coding	protein_coding	protein_coding	protein_coding	10	92	2	1.59687	1.99518	2.39349	0.0164598	0.00467273	0.110142	0.0600108
chr10	73062164	73062264	4647494	0	-	0.32	(0.28,0.32]	chr10	427530	82	INTRON	INTRON	P4HA1	ENSG00000122884.13	ENST00000394890.7:ENST00000307116.6:ENST00000373008.6:ENST00000440381.5:ENST00000263556.3	protein_coding	protein_coding	protein_coding	protein_coding	5	65	2	1.56134	1.99501	2.42868	0.0740624	0.0105331	0.191153	0.0908969
chr5	181256996	181257094	2563437	0	+	0.408163	(0.378,0.408]	chr5	245313	14	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	CTC-338M12.4	ENSG00000233937.8	ENST00000506340.3:ENST00000505151.6:ENST00000511331.5:ENST00000417281.2:ENST00000599439.2	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	21	211	2	1.84951	1.99488	2.14025	0.00481897	3.94981e-4	0.060277	0.0178567
chr18	46097958	46098058	6965502	0	-	0.6	(0.57,1]	chr18	689420	1	CDS_STOP	CDS_STOP:CDS:UTR5:EXON_MRNA:SS5_PROX:INTRON	ATP5F1A	ENSG00000152234.16	ENST00000398752.11:ENST00000282050.6:ENST00000593152.6:ENST00000586592.5:ENST00000590665.5:ENST00000590156.5:ENST00000592364.5:ENST00000589252.5:ENST00000589869.5:ENST00000590406.5:ENST00000590324.5:ENST00000590448.5:ENST00000592989.1:ENST00000591981.5:ENST00000585650.1:ENST00000591267.1:ENST00000588390.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	44	2	1.49341	1.99481	2.49621	0.0307286	0.00209832	0.143385	0.0413494
chr22	21853326	21853426	7561243	0	-	0.29	(0.28,0.32]	chr22	773388	451	INTRON	INTRON	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	13	165	2	1.52333	1.99478	2.46623	0.029991	5.37806e-4	0.129138	0.0209783
chr1	32120229	32120329	63575	0	+	0.41	(0.408,0.44]	chr1	8071	117	INTRON	INTRON	KPNA6	ENSG00000025800.14	ENST00000373625.8:ENST00000471599.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	51	2	1.93002	1.994745	2.05947	0.0333232	0.022095	0.134145	0.123903
chr10	22572119	22572218	4579067	0	-	0.414141	(0.408,0.44]	chr10	421992	27	INTRON	INTRON	PIP4K2A	ENSG00000150867.14	ENST00000376573.9:ENST00000323883.11:ENST00000545335.5:ENST00000604912.1:ENST00000422321.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	51	2	1.93002	1.994745	2.05947	0.0333232	0.022095	0.134145	0.123903
chr2	28940170	28940269	725651	0	+	0.434343	(0.408,0.44]	chr2	83872	18	INTRON	INTRON	WDR43	ENSG00000163811.12	ENST00000407426.8:ENST00000446643.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	51	2	1.93002	1.994745	2.05947	0.0333232	0.022095	0.134145	0.123903
chr1	91020147	91020247	502509	0	-	0.27	[0,0.28]	chr1	59504	374	INTRON	INTRON	ZNF644	ENSG00000122482.22	ENST00000370440.5:ENST00000337393.10:ENST00000347275.9:ENST00000361321.5:ENST00000467231.5:ENST00000498303.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	62	2	1.98291	1.9947	2.00649	0.0494143	0.040391	0.161534	0.156195
chr11	749073	749173	4720349	0	+	0.47	(0.44,0.476]	chr11	436387	11	INTRON	INTRON	TALDO1	ENSG00000177156.11	ENST00000528070.5:ENST00000532685.1:ENST00000528097.5:ENST00000530440.1:ENST00000319006.8:ENST00000530119.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	92	2	1.62674	1.9946800000000002	2.36262	0.0253995	0.00255041	0.133676	0.0449067
chr2	65269218	65269315	799482	0	+	0.443299	(0.44,0.476]	chr2	89386	6	UTR3	UTR3:EXON_MRNA	ACTR2	ENSG00000138071.15	ENST00000260641.10:ENST00000377982.8	protein_coding	protein_coding	protein_coding	protein_coding	16	147	2	1.50864	1.9946549999999998	2.48067	0.0142443	5.78772e-4	0.0962435	0.0218339
chr1	10091868	10091967	19717	0	+	0.494949	(0.476,0.515]	chr1	1847	189	INTRON	INTRON	UBE4B	ENSG00000130939.20	ENST00000672724.1:ENST00000253251.12:ENST00000343090.11	protein_coding	protein_coding	protein_coding	protein_coding	6	63	2	1.74317	1.994645	2.24612	0.0396373	0.00799949	0.161534	0.0766625
chr17	64518820	64518920	6662018	0	+	0.51	(0.476,0.515]	chr17	650212	1	SS3_PROX	SS3_PROX:INTRON	CEP95	ENSG00000258890.8	ENST00000579860.5:ENST00000580188.1:ENST00000556440.7:ENST00000553956.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	63	2	1.74317	1.994645	2.24612	0.0396373	0.00799949	0.161534	0.0766625
chr21	29046067	29046166	7390189	0	+	0.454545	(0.44,0.476]	chr21	753021	21	INTRON	INTRON	USP16	ENSG00000156256.15	ENST00000399975.7:ENST00000334352.8:ENST00000474835.5:ENST00000399976.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	43	2	1.85146	1.994625	2.13779	0.0545846	0.0264596	0.182529	0.122506
chr21	33908132	33908222	7444971	0	-	0.344444	(0.32,0.35]	chr21	759726	3	INTRON	INTRON	ENSG00000249209:ATP5PO	ENSG00000249209.2:ENSG00000241837.7	ENST00000429238.2:ENST00000290299.7:ENST00000491703.5:ENST00000431254.5:ENST00000652380.1:ENST00000418933.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	68	2	1.68188	1.9945950000000001	2.30731	0.031521	0.0176772	0.144381	0.10525
chr16	89362876	89362976	6542309	0	-	0.47	(0.44,0.476]	chr16	634225	8	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000647238.1:ENST00000644045.1:ENST00000643147.1:ENST00000644139.1:ENST00000568512.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	79	2	1.54104	1.99458	2.44812	0.0339289	0.00368597	0.146815	0.0535094
chr15	92923427	92923525	6103926	0	+	0.44898	(0.44,0.476]	chr15	581409	16	INTRON	INTRON	ENSG00000279765:CHD2	ENSG00000279765.3:ENSG00000173575.22	ENST00000629685.2:ENST00000630790.1:ENST00000626874.2:ENST00000394196.9:ENST00000635856.1:ENST00000420239.7:ENST00000628375.2:ENST00000625990.3:ENST00000626782.2:ENST00000629136.1:ENST00000636861.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	61	2	1.81283	1.994515	2.1762	0.0343005	0.0092251	0.135641	0.0855292
chr6	34653926	34654025	3085790	0	-	0.444444	(0.44,0.476]	chr6	288685	68	INTRON	INTRON	ILRUN	ENSG00000196821.10	ENST00000374026.7:ENST00000374023.8:ENST00000374021.1	protein_coding	protein_coding	protein_coding	protein_coding	6	61	2	1.81283	1.994515	2.1762	0.0343005	0.0092251	0.135641	0.0855292
chr1	10420320	10420415	22698	0	+	0.336842	(0.32,0.35]	chr1	2438	7	UTR3	UTR3:EXON_MRNA	PGD	ENSG00000142657.21	ENST00000270776.13	protein_coding	protein_coding	protein_coding	protein_coding	19	219	2	1.92516	1.994465	2.06377	0.00228563	0.00226811	0.0438311	0.0425999
chrX	44903885	44903985	7648909	0	+	0.36	(0.35,0.378]	chrX	782726	295	INTRON	INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000675440.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000621147.5:ENST00000475233.1:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	54	2	1.51819	1.9944199999999999	2.47065	0.0386172	0.0372715	0.155878	0.142656
chr12	122599736	122599836	5241363	0	+	0.37	(0.35,0.378]	chr12	497814	14	INTRON	INTRON	KNTC1	ENSG00000184445.12	ENST00000450485.6:ENST00000333479.12:ENST00000535186.1:ENST00000423927.2:ENST00000545065.1:ENST00000377192.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	46	2	1.81767	1.99423	2.17079	0.0640429	0.0225978	0.177882	0.124921
chr6	10929041	10929133	2812186	0	+	0.467391	(0.44,0.476]	chr6	264644	2	INTRON	INTRON	SYCP2L	ENSG00000153157.13	ENST00000341041.8:ENST00000283141.11:ENST00000543878.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	14	108	2	1.20708	1.9941849999999999	2.78129	0.0402467	0.00229634	0.144158	0.0439319
chr15	64484010	64484110	6044322	0	+	0.35	(0.32,0.35]	chr15	575688	228	INTRON	INTRON	ZNF609	ENSG00000180357.10	ENST00000326648.5:ENST00000416172.1	protein_coding	protein_coding	protein_coding	protein_coding	8	69	2	1.35626	1.99418	2.6321	0.0414162	0.0268	0.161578	0.123349
chr3	196074933	196074995	1897484	0	-	0.548387	(0.515,0.57]	chr3	189979	1	SS5_PROX	SS5_PROX:INTRON	TFRC	ENSG00000072274.13	ENST00000420415.5:ENST00000360110.9:ENST00000392396.7:ENST00000421258.1:ENST00000464011.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	33	2	1.7492	1.994175	2.23915	0.0596178	0.0382504	0.16883600000000001	0.15832
chr6	16147749	16147848	2825966	0	+	0.373737	(0.35,0.378]	chr6	265339	11	UTR3	UTR3:EXON_MRNA	MYLIP	ENSG00000007944.15	ENST00000356840.8:ENST00000349606.4	protein_coding	protein_coding	protein_coding	protein_coding	21	217	2	1.78495	1.99411	2.20327	0.00263849	0.00127022	0.0473006	0.0326242
chr16	89466671	89466771	6543363	0	-	0.3	(0.28,0.32]	chr16	634281	350	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	77	2	1.86684	1.994065	2.12129	0.0605813	0.00696605	0.171122	0.0754576
chr1	153767173	153767273	227292	0	+	0.31	(0.28,0.32]	chr1	26115	8	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	INTS3	ENSG00000143624.14	ENST00000318967.7:ENST00000435409.6:ENST00000481797.5:ENST00000512605.4:ENST00000476843.5:ENST00000503133.5:ENST00000368670.5:ENST00000368669.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	54	2	1.96376	1.99403	2.0243	0.0480066	0.0364967	0.153759	0.153019
chr14	91508806	91508905	5956167	0	-	0.292929	(0.28,0.32]	chr14	565483	177	INTRON	INTRON	PPP4R3A	ENSG00000100796.18	ENST00000554943.6:ENST00000554684.5:ENST00000555462.5:ENST00000554308.5:ENST00000554390.5:ENST00000555029.5:ENST00000557018.5:ENST00000554511.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:nonsense_mediated_decay	4	54	2	1.96376	1.99403	2.0243	0.0480066	0.0364967	0.153759	0.153019
chr10	42814001	42814100	4428347	0	+	0.353535	(0.35,0.378]	chr10	408133	114	INTRON	INTRON	BMS1	ENSG00000165733.8	ENST00000374518.6	protein_coding	protein_coding	protein_coding	protein_coding	4	41	2	1.58862	1.994005	2.39939	0.0615516	0.0458078	0.193423	0.149888
chr11	77666817	77666916	4994415	0	-	0.373737	(0.35,0.378]	chr11	471950	70	UTR3	UTR3:EXON_MRNA	RSF1	ENSG00000048649.14	ENST00000308488.11:ENST00000480887.5	protein_coding	protein_coding	protein_coding	protein_coding	4	41	2	1.58862	1.994005	2.39939	0.0615516	0.0458078	0.193423	0.149888
chr17	16043573	16043672	6733456	0	-	0.373737	(0.35,0.378]	chr17	660500	27	INTRON	INTRON	NCOR1	ENSG00000141027.22	ENST00000268712.8:ENST00000395851.5:ENST00000470782.5:ENST00000464381.5:ENST00000395849.6:ENST00000579573.2:ENST00000580554.1:ENST00000579606.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	41	2	1.58862	1.994005	2.39939	0.0615516	0.0458078	0.193423	0.149888
chr3	184190610	184190707	1582010	0	+	0.360825	(0.35,0.378]	chr3	163437	8	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	ABCF3	ENSG00000161204.12	ENST00000292808.5:ENST00000473311.5:ENST00000429586.7:ENST00000468892.5:ENST00000466742.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	41	2	1.58862	1.994005	2.39939	0.0615516	0.0458078	0.193423	0.149888
chr11	57497945	57498045	4953619	0	-	0.47	(0.44,0.476]	chr11	465035	1	SS3_PROX	SS3_PROX:INTRON	SLC43A1	ENSG00000149150.9	ENST00000278426.8:ENST00000528450.5:ENST00000525764.5:ENST00000533515.5:ENST00000530159.5:ENST00000533066.5:ENST00000524995.5:ENST00000534105.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	70	2	1.84134	1.9939999999999998	2.14666	0.0175428	0.0116436	0.11319	0.0889659
chr2	112653645	112653744	852143	0	+	0.323232	(0.32,0.35]	chr2	95585	3	INTRON	INTRON	SLC20A1	ENSG00000144136.11	ENST00000272542.8:ENST00000498224.5:ENST00000433924.5:ENST00000456264.5:ENST00000413135.1:ENST00000480984.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	23	256	2	1.88994	1.993995	2.09805	0.00193835	0.00149879	0.0399284	0.03578
chr7	12391622	12391720	3485318	0	-	0.306122	(0.28,0.32]	chr7	325964	19	INTRON	INTRON	VWDE	ENSG00000146530.15	ENST00000275358.8:ENST00000452576.6:ENST00000521169.5:ENST00000326715.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	94	2	1.94591	1.99399	2.04207	0.0228482	0.0121395	0.125519	0.0910127
chr1	191287	191387	353129	0	-	0.53	(0.515,0.57]	chr1	40882	20	INTRON	INTRON	WASH9P	ENSG00000279457.4	ENST00000623083.4	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	7	61	2	1.98329	1.993985	2.00468	0.0166344	0.0105419	0.110511	0.0860389
chr1	89527186	89527286	157423	0	+	0.29	(0.28,0.32]	chr1	17164	2	SS5_PROX	SS5_PROX:INTRON	LRRC8B	ENSG00000197147.15	ENST00000330947.7:ENST00000439853.6:ENST00000449440.5:ENST00000640258.1:ENST00000639264.1	protein_coding	protein_coding	protein_coding	protein_coding	5	55	2	1.47299	1.993935	2.51488	0.0597769	0.0380957	0.189982	0.141678
chr18	21748900	21749000	6879813	0	+	0.4	(0.378,0.408]	chr18	681868	67	INTRON	INTRON	MIB1	ENSG00000101752.13	ENST00000578646.5:ENST00000261537.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	81	2	1.74732	1.9939	2.24048	0.0166132	0.00867536	0.110511	0.0787771
chr20	35732230	35732326	7336451	0	-	0.302083	(0.28,0.32]	chr20	747475	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	RBM39	ENSG00000131051.24	ENST00000253363.11:ENST00000639702.1:ENST00000656873.1:ENST00000463004.5:ENST00000361162.10:ENST00000461283.5:ENST00000403542.6:ENST00000338163.10:ENST00000528062.7:ENST00000429968.5:ENST00000444878.5:ENST00000665058.1:ENST00000492779.5:ENST00000374038.7:ENST00000412738.5:ENST00000434927.5:ENST00000425184.5:ENST00000481037.5:ENST00000455343.5:ENST00000416108.5:ENST00000426951.5:ENST00000477334.1:ENST00000442447.5:ENST00000449489.5:ENST00000433027.5:ENST00000487604.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	14	162	2	1.77	1.99387	2.21774	0.00649055	0.00535623	0.0699952	0.0663076
chr22	26469620	26469720	7563980	0	-	0.39	(0.378,0.408]	chr22	773859	6	INTRON	INTRON	HPS4	ENSG00000100099.21	ENST00000398145.7:ENST00000466781.5:ENST00000439453.5:ENST00000336873.9:ENST00000402105.7:ENST00000464362.5:ENST00000429411.5:ENST00000496385.5:ENST00000485842.5:ENST00000422379.2:ENST00000459918.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	54	2	1.59317	1.993805	2.39444	0.0603812	0.0122858	0.19151	0.091087
chr3	42633208	42633300	1406309	0	+	0.48913	(0.476,0.515]	chr3	147692	1	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NKTR	ENSG00000114857.19	ENST00000468735.6:ENST00000429888.5:ENST00000232978.13:ENST00000465584.5:ENST00000498730.5:ENST00000460807.2:ENST00000508351.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	34	325	2	1.94858	1.9937999999999998	2.03902	9.13957e-4	3.41848e-4	0.0278396	0.0164909
chr6	36596560	36596660	2854434	0	+	0.46	(0.44,0.476]	chr6	269771	4	SS3_PROX	SS3_PROX:INTRON	SRSF3	ENSG00000112081.17	ENST00000613941.4:ENST00000373715.11:ENST00000620242.1:ENST00000339436.11:ENST00000477442.6:ENST00000620941.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	84	2	1.92837	1.993785	2.0592	0.0222222	0.00556585	0.124303	0.0648867
chr20	32808194	32808291	7257153	0	+	0.443299	(0.44,0.476]	chr20	737245	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	DNMT3B	ENSG00000088305.19	ENST00000696232.1:ENST00000328111.6:ENST00000696231.1:ENST00000348286.6:ENST00000353855.6:ENST00000696233.1:ENST00000443239.7:ENST00000201963.3:ENST00000696238.1:ENST00000696245.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	17	163	2	1.962	1.99377	2.02554	0.00427231	0.00109938	0.0574102	0.03038
chr7	152244379	152244477	3679355	0	-	0.561224	(0.515,0.57]	chr7	341574	4	UTR3	UTR3:EXON_MRNA:INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000681033.1:ENST00000679645.1:ENST00000684550.1:ENST00000489110.2:ENST00000683490.1:ENST00000680479.1:ENST00000683616.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	10	86	2	1.56269	1.993725	2.42476	0.0319658	6.76573e-4	0.13174	0.0236287
chr5	65949785	65949885	2371076	0	+	0.33	(0.32,0.35]	chr5	228472	226	INTRON	INTRON	ERBIN	ENSG00000112851.15	ENST00000380943.6:ENST00000507490.1:ENST00000416865.6:ENST00000380935.5:ENST00000284037.10:ENST00000380938.6:ENST00000511297.5:ENST00000506030.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	89	2	1.35626	1.9937049999999998	2.63115	0.0414162	0.00608073	0.161578	0.0676501
chr19	28490355	28490455	7165998	0	-	0.52	(0.515,0.57]	chr19	724189	221	INTRON	INTRON	ENSG00000283403:ENSG00000267243	ENSG00000283403.1:ENSG00000267243.6	ENST00000592347.5:ENST00000593065.5	lncRNA	lncRNA	lncRNA	lncRNA	18	148	2	1.88115	1.993675	2.1062	0.00389118	5.775e-4	0.0544902	0.0218253
chr11	59799765	59799856	4795596	0	+	0.417582	(0.408,0.44]	chr11	444017	2	UTR3	UTR3:EXON_MRNA:INTRON	STX3	ENSG00000166900.17	ENST00000641815.1:ENST00000337979.9:ENST00000533637.5:ENST00000633708.1:ENST00000529177.5:ENST00000530221.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	81	2	1.66104	1.9936150000000001	2.32619	0.0349715	0.00239266	0.13747500000000001	0.0450826
chrX	71536457	71536557	7679977	0	+	0.5	(0.476,0.515]	chrX	786385	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	OGT	ENSG00000147162.14	ENST00000373719.8:ENST00000488174.5:ENST00000373701.7:ENST00000472270.1:ENST00000498566.3:ENST00000444774.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	70	2	1.44561	1.9935900000000002	2.54157	0.0359862	0.00697457	0.152355	0.0718189
chr16	67770546	67770645	6505321	0	-	0.494949	(0.476,0.515]	chr16	629647	12	INTRON	INTRON	RANBP10	ENSG00000141084.12	ENST00000317506.8:ENST00000448631.6:ENST00000602506.5:ENST00000602677.5:ENST00000602525.5:ENST00000602638.5:ENST00000602815.5:ENST00000602887.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	58	2	1.50151	1.9935100000000001	2.48551	0.054954	0.00756632	0.165463	0.0773151
chr7	156640454	156640554	3685743	0	-	0.7	(0.57,1]	chr7	341963	22	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	LINC01006	ENSG00000182648.14	ENST00000651649.1:ENST00000652322.1:ENST00000656672.1:ENST00000661405.1:ENST00000656928.1:ENST00000661595.1:ENST00000447933.7:ENST00000660473.1:ENST00000656837.1:ENST00000663891.1:ENST00000458645.5:ENST00000418309.1:ENST00000664734.1:ENST00000333319.6:ENST00000689604.1:ENST00000661282.1:ENST00000692446.1:ENST00000435354.1:ENST00000624071.1	lncRNA	lncRNA	lncRNA	lncRNA	7	34	2	1.50683	1.99338	2.47993	0.0378927	0.007207	0.141283	0.0756278
chr6	15253361	15253461	2823019	0	+	0.36	(0.35,0.378]	chr6	265190	40	INTRON	INTRON	JARID2	ENSG00000008083.14	ENST00000341776.7:ENST00000397311.4	protein_coding	protein_coding	protein_coding	protein_coding	10	89	2	1.38988	1.99322	2.59656	0.0304557	0.00638551	0.143385	0.0693551
chr17	47976460	47976543	6623168	0	+	0.445783	(0.44,0.476]	chr17	646208	1	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CDK5RAP3	ENSG00000108465.15	ENST00000536708.6:ENST00000584991.5:ENST00000584063.5:ENST00000338399.9:ENST00000579175.5:ENST00000585163.5:ENST00000580287.5:ENST00000580391.5:ENST00000580670.6:ENST00000584168.5:ENST00000582114.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	51	2	1.9039	1.9930050000000001	2.08211	0.0501498	0.0130715	0.156383	0.0996047
chr15	42532007	42532103	6009980	0	+	0.322917	(0.32,0.35]	chr15	572195	6	UTR3	UTR3:EXON_MRNA:INTRON	SNAP23	ENSG00000092531.10	ENST00000349777.5:ENST00000249647.8:ENST00000563873.5:ENST00000563830.2:ENST00000568841.5	protein_coding	protein_coding	protein_coding	protein_coding	10	95	2	1.20203	1.9929700000000001	2.78391	0.0583213	0.00347285	0.189131	0.052042
chr8	60254739	60254839	3956634	0	-	0.37	(0.35,0.378]	chr8	362980	220	INTRON	INTRON	CA8	ENSG00000178538.10	ENST00000317995.5:ENST00000524872.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	68	2	1.8773	1.992945	2.10859	0.0272722	0.0184031	0.136494	0.108834
chr4	70937225	70937325	1970854	0	+	0.22	[0,0.28]	chr4	197571	343	INTRON	INTRON	MOB1B	ENSG00000173542.9	ENST00000502869.5:ENST00000509041.5:ENST00000309395.7:ENST00000396051.2:ENST00000511449.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	96	2	1.81439	1.99294	2.17149	0.0308079	0.0160379	0.13151	0.109464
chr1	168246333	168246432	250368	0	+	0.333333	(0.32,0.35]	chr1	29769	39	UTR3	UTR3:EXON_MRNA	SFT2D2	ENSG00000213064.10	ENST00000271375.7	protein_coding	protein_coding	protein_coding	protein_coding	6	68	2	1.80487	1.9928949999999999	2.18092	0.0256608	0.0210603	0.122559	0.120491
chr4	87002354	87002454	1994470	0	+	0.36	(0.35,0.378]	chr4	199036	284	INTRON	INTRON	AFF1	ENSG00000172493.23	ENST00000504956.5:ENST00000395146.9:ENST00000507468.5:ENST00000674009.1:ENST00000503477.5:ENST00000511442.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	46	2	1.87717	1.99288	2.10859	0.0555068	0.0272722	0.165463	0.136494
chr16	88773524	88773624	6540105	0	-	0.62	(0.57,1]	chr16	633998	237	INTRON	INTRON	PIEZO1	ENSG00000103335.22	ENST00000301015.14	protein_coding	protein_coding	protein_coding	protein_coding	6	32	2	1.89351	1.99279	2.09207	0.0255126	0.0121228	0.133676	0.090965
chr10	17451659	17451759	4568989	0	-	0.39	(0.378,0.408]	chr10	421387	607	INTRON	INTRON	ST8SIA6	ENSG00000148488.17	ENST00000377602.5:ENST00000648997.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	14	145	2	1.91219	1.992725	2.07326	0.00434774	0.00280604	0.0602259	0.0470768
chr3	4984843	4984939	1353566	0	+	0.197917	[0,0.28]	chr3	142346	13	UTR3	UTR3:EXON_MRNA	BHLHE40	ENSG00000134107.5	ENST00000256495.4	protein_coding	protein_coding	protein_coding	protein_coding	9	126	2	1.42841	1.99272	2.55703	0.0524249	0.00276846	0.160466	0.048706
chr2	174165890	174165990	1270026	0	-	0.48	(0.476,0.515]	chr2	134282	235	INTRON	INTRON	OLA1	ENSG00000138430.16	ENST00000284719.8:ENST00000344357.9:ENST00000428402.6:ENST00000409546.5:ENST00000429575.1	protein_coding	protein_coding	protein_coding	protein_coding	4	42	2	1.99197	1.99269	1.99341	0.039572	0.037389	0.155878	0.143072
chr21	37483709	37483807	7407404	0	+	0.5	(0.476,0.515]	chr21	754917	22	INTRON	INTRON	DYRK1A	ENSG00000157540.22	ENST00000646523.1:ENST00000647425.1:ENST00000647188.2:ENST00000647504.1:ENST00000644942.1:ENST00000338785.8:ENST00000643624.1:ENST00000426672.6:ENST00000398960.7:ENST00000646548.1:ENST00000645424.1:ENST00000643854.1:ENST00000642309.1:ENST00000645774.1:ENST00000398956.2:ENST00000643355.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	42	2	1.99197	1.99269	1.99341	0.039572	0.037389	0.155878	0.143072
chr7	148822962	148823062	3670139	0	-	0.34	(0.32,0.35]	chr7	340580	22	INTRON	INTRON	EZH2	ENSG00000106462.12	ENST00000683292.1:ENST00000320356.7:ENST00000492143.5:ENST00000478654.5:ENST00000350995.6:ENST00000460911.5:ENST00000683744.1:ENST00000682317.1:ENST00000682263.1:ENST00000684300.1:ENST00000476773.5:ENST00000483967.5:ENST00000498186.5:ENST00000483012.1:ENST00000682401.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	94	2	1.83295	1.99269	2.15243	0.0224097	0.0057293	0.11692	0.0681402
chr12	26947373	26947472	5097480	0	+	0.40404	(0.378,0.408]	chr12	481595	83	INTRON	INTRON	FGFR1OP2	ENSG00000111790.14	ENST00000229395.8:ENST00000544111.5:ENST00000395941.4:ENST00000546072.5:ENST00000327214.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	48	2	1.84831	1.99267	2.13703	0.0797592	0.0172621	0.19979	0.111749
chr16	10428867	10428941	6286708	0	+	0.459459	(0.44,0.476]	chr16	601976	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	ATF7IP2	ENSG00000166669.14	ENST00000396559.5:ENST00000396560.6:ENST00000562527.5:ENST00000561932.5:ENST00000543967.5:ENST00000562102.6:ENST00000535850.5:ENST00000569900.5:ENST00000569939.5:ENST00000568027.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	17	159	2	1.9083	1.992585	2.07687	0.00351056	0.00169722	0.0525467	0.0381936
chr1	1398442	1398496	359909	0	-	0.5	(0.476,0.515]	chr1	41804	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CCNL2	ENSG00000221978.13	ENST00000400809.8:ENST00000496007.5:ENST00000481223.6:ENST00000488340.5:ENST00000408918.8:ENST00000425598.2:ENST00000497013.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	73	2	1.48023	1.9925549999999999	2.50488	0.0559072	0.00285353	0.18407	0.0474836
chr6	17685311	17685411	3065997	0	-	0.44	(0.408,0.44]	chr6	284866	92	INTRON	INTRON	NUP153	ENSG00000124789.12	ENST00000613258.4:ENST00000537253.5:ENST00000262077.3	protein_coding	protein_coding	protein_coding	protein_coding	5	51	2	1.81759	1.992525	2.16746	0.0316273	0.024436	0.144405	0.12011
chr5	88205909	88205954	2669100	0	-	0.311111	(0.28,0.32]	chr5	252643	1	CDS	CDS:UTR3:EXON_MRNA	TMEM161B	ENSG00000164180.14	ENST00000514135.5:ENST00000296595.11:ENST00000511087.5:ENST00000510089.5:ENST00000506536.5:ENST00000511218.5:ENST00000512429.5:ENST00000507872.1:ENST00000509387.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	65	2	1.91611	1.9924749999999998	2.06884	0.0539102	0.0152581	0.164153	0.108569
chr1	23314898	23314997	399291	0	-	0.323232	(0.32,0.35]	chr1	47847	8	INTRON	INTRON	HNRNPR	ENSG00000125944.21	ENST00000478691.5:ENST00000302271.11:ENST00000374616.7:ENST00000374612.5:ENST00000675048.1:ENST00000606561.5:ENST00000427764.3:ENST00000463552.5:ENST00000470941.5	protein_coding	protein_coding	protein_coding	protein_coding	5	60	2	1.73318	1.9924549999999999	2.25173	0.0462868	0.0180122	0.150684	0.114436
chr3	9999022	9999121	1362092	0	+	0.424242	(0.408,0.44]	chr3	143402	48	INTRON	INTRON	EMC3-AS1	ENSG00000180385.9	ENST00000692142.1:ENST00000366264.6:ENST00000693066.1:ENST00000326237.3:ENST00000440568.1:ENST00000424904.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	6	59	2	1.53812	1.9924300000000001	2.44674	0.0501609	0.00868283	0.156383	0.0842798
chr20	50583978	50584075	7286660	0	+	0.659794	(0.57,1]	chr20	741290	14	UTR3	UTR3:EXON_MRNA	PTPN1	ENSG00000196396.10	ENST00000541713.5:ENST00000371621.5	protein_coding	protein_coding	protein_coding	protein_coding	8	42	2	1.79898	1.992385	2.18579	0.0206524	0.00400391	0.122348	0.0551303
chr13	51404198	51404297	5595555	0	-	0.454545	(0.44,0.476]	chr13	534821	10	INTRON	INTRON	INTS6	ENSG00000102786.15	ENST00000398119.6:ENST00000311234.9:ENST00000469430.5:ENST00000497989.5:ENST00000486195.6:ENST00000491189.5:ENST00000466784.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	42	2	1.83899	1.99236	2.14573	0.0589734	0.0238593	0.167915	0.129075
chr19	15354531	15354627	7147444	0	-	0.302083	(0.28,0.32]	chr19	721977	13	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	AKAP8	ENSG00000105127.10	ENST00000269701.7:ENST00000680461.1:ENST00000681812.1:ENST00000680336.1:ENST00000680245.1:ENST00000681018.1:ENST00000679798.1:ENST00000680199.1:ENST00000598597.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	129	2	1.53798	1.9923250000000001	2.44667	0.0287839	0.00267187	0.140044	0.0464128
chr6	44247936	44248007	2872837	0	+	0.56338	(0.515,0.57]	chr6	272578	2	UTR5	UTR5:EXON_MRNA:INTRON	HSP90AB1	ENSG00000096384.20	ENST00000620073.4:ENST00000353801.7:ENST00000371646.10:ENST00000371554.2	protein_coding	protein_coding	protein_coding	protein_coding	9	82	2	1.38719	1.9923199999999999	2.59745	0.0540435	6.62645e-4	0.181713	0.0234815
chrX	73946898	73946998	7682120	0	+	0.29	(0.28,0.32]	chrX	786615	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	JPX	ENSG00000225470.8	ENST00000664637.1:ENST00000639185.1:ENST00000655090.1:ENST00000640437.1:ENST00000660546.1:ENST00000667886.1:ENST00000660840.1:ENST00000657179.1:ENST00000670506.1:ENST00000657910.1:ENST00000662120.1:ENST00000671207.1:ENST00000659254.1:ENST00000656624.1:ENST00000667573.1:ENST00000666493.1:ENST00000660856.1:ENST00000660836.1:ENST00000668590.1:ENST00000658649.1:ENST00000414209.6:ENST00000654137.1:ENST00000670994.1:ENST00000653479.1:ENST00000602772.5:ENST00000655879.1:ENST00000657372.1:ENST00000657096.1:ENST00000602985.6:ENST00000670685.1:ENST00000670503.1:ENST00000663027.1:ENST00000654995.1:ENST00000602895.6:ENST00000654374.1:ENST00000660087.1:ENST00000665032.1:ENST00000671336.1:ENST00000671476.1:ENST00000667057.1:ENST00000670192.1:ENST00000670464.1:ENST00000665345.1:ENST00000661546.1:ENST00000662543.1:ENST00000602938.6:ENST00000602737.6:ENST00000664295.1:ENST00000654005.1:ENST00000669149.1:ENST00000659852.1:ENST00000656509.1:ENST00000602294.6:ENST00000667294.1:ENST00000663470.1:ENST00000602920.6:ENST00000671021.1:ENST00000659849.1:ENST00000667937.1:ENST00000661130.1:ENST00000654196.1:ENST00000655994.1:ENST00000659373.1:ENST00000662239.1:ENST00000670805.1:ENST00000656263.1:ENST00000653069.1:ENST00000657638.1:ENST00000653808.1:ENST00000653929.1:ENST00000653885.1:ENST00000659023.1:ENST00000602546.5:ENST00000664328.1:ENST00000659622.1:ENST00000415215.1:ENST00000671518.1:ENST00000670408.1	lncRNA	lncRNA	lncRNA	lncRNA	5	65	2	1.76378	1.992235	2.22069	0.0395495	0.0243177	0.161534	0.12011
chr16	84723097	84723196	6410134	0	+	0.363636	(0.35,0.378]	chr16	615272	62	INTRON	INTRON	USP10	ENSG00000103194.16	ENST00000562743.5:ENST00000540269.6:ENST00000563892.5:ENST00000562092.1:ENST00000569511.5:ENST00000219473.12:ENST00000570191.5:ENST00000563048.5:ENST00000562283.5:ENST00000563386.5:ENST00000569038.5:ENST00000570053.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	71	2	1.38772	1.99214	2.59656	0.0555481	0.00638551	0.18407	0.0693551
chr2	121495303	121495402	1220837	0	-	0.393939	(0.378,0.408]	chr2	129999	51	INTRON	INTRON	CLASP1	ENSG00000074054.20	ENST00000263710.8:ENST00000397587.7:ENST00000541377.5:ENST00000409078.8:ENST00000455322.6:ENST00000452274.6:ENST00000418989.5:ENST00000449975.1:ENST00000474065.5:ENST00000480007.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	67	2	1.54765	1.99211	2.43657	0.0334147	0.0106733	0.146709	0.0861859
chr3	47832022	47832122	1420269	0	+	0.35	(0.32,0.35]	chr3	149238	10	INTRON	INTRON	DHX30	ENSG00000132153.15	ENST00000395745.6:ENST00000445061.6:ENST00000441384.5:ENST00000348968.8:ENST00000446256.6:ENST00000619982.4:ENST00000457607.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	72	2	1.96288	1.992105	2.02133	0.0239991	0.017146	0.119664	0.111072
chr3	100734038	100734135	1468188	0	+	0.329897	(0.32,0.35]	chr3	153872	15	EXON_MRNA	EXON_MRNA:INTRON	TFG	ENSG00000114354.15	ENST00000675047.1:ENST00000490574.6:ENST00000675543.1:ENST00000676308.1:ENST00000675499.1:ENST00000674699.1:ENST00000418917.7:ENST00000675553.1:ENST00000620299.5:ENST00000675246.1:ENST00000675692.1:ENST00000676276.1:ENST00000676054.1:ENST00000675890.1:ENST00000675011.1:ENST00000675586.1:ENST00000674645.1:ENST00000675958.1:ENST00000674798.1:ENST00000676010.1:ENST00000675591.1:ENST00000675420.1:ENST00000674615.1:ENST00000676431.1:ENST00000674758.1:ENST00000240851.9:ENST00000675243.1:ENST00000676111.1:ENST00000476228.5:ENST00000463568.6:ENST00000676395.1:ENST00000487505.6:ENST00000615993.2:ENST00000676455.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	123	2	1.85774	1.9920749999999998	2.12641	0.00815266	0.0061655	0.0766625	0.0712486
chr1	212762289	212762389	634485	0	-	0.31	(0.28,0.32]	chr1	74949	223	INTRON	INTRON	NSL1	ENSG00000117697.15	ENST00000366977.8:ENST00000366978.5:ENST00000366976.3:ENST00000626725.1	protein_coding	protein_coding	protein_coding	protein_coding	11	139	2	1.67855	1.992045	2.30554	0.0219528	0.00189266	0.115201	0.0402736
chr16	21509433	21509533	6461451	0	-	0.46	(0.44,0.476]	chr16	623383	29	INTRON	INTRON	SMG1P3	ENSG00000180747.15	ENST00000522841.6:ENST00000437413.2:ENST00000435197.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	5	44	2	1.60176	1.991975	2.38219	0.045456	0.0389597	0.160861	0.149888
chr3	172775612	172775712	1563477	0	+	0.46	(0.44,0.476]	chr3	161783	12	INTRON	INTRON	ECT2	ENSG00000114346.14	ENST00000232458.9:ENST00000540509.5:ENST00000392692.8:ENST00000417960.5:ENST00000441497.6:ENST00000444250.1	protein_coding	protein_coding	protein_coding	protein_coding	5	44	2	1.60176	1.991975	2.38219	0.045456	0.0389597	0.160861	0.149888
chr12	4556252	4556352	5067923	0	+	0.22	[0,0.28]	chr12	478366	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	RAD51AP1	ENSG00000111247.15	ENST00000536886.5:ENST00000398012.7:ENST00000228843.13:ENST00000352618.9:ENST00000442992.6:ENST00000535558.5:ENST00000544927.5:ENST00000536117.5:ENST00000544931.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	10	135	2	1.53862	1.9919350000000002	2.44525	0.0254957	0.0062932	0.133676	0.0687526
chr7	105009811	105009911	3601049	0	-	0.44	(0.408,0.44]	chr7	336035	260	INTRON	INTRON	LINC01004	ENSG00000228393.5	ENST00000450686.1:ENST00000655204.2:ENST00000445184.1	lncRNA	lncRNA	lncRNA	lncRNA	12	113	2	1.2012100000000001	1.99193	2.78265	0.060705	2.28487e-4	0.171398	0.0133228
chr11	66626105	66626178	4810896	0	+	0.547945	(0.515,0.57]	chr11	447872	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RBM14-RBM4:RBM14	ENSG00000248643.5:ENSG00000239306.5	ENST00000412278.2:ENST00000393979.3:ENST00000511114.1:ENST00000310137.5:ENST00000421355.1:ENST00000500635.2:ENST00000409738.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	36	2	1.8707	1.991915	2.11313	0.0523213	0.0256725	0.160182	0.133676
chr2	175088948	175089048	1271529	0	-	0.52	(0.515,0.57]	chr2	134392	78	INTRON	INTRON	ATF2	ENSG00000115966.18	ENST00000345739.9:ENST00000426833.7:ENST00000264110.7:ENST00000409437.5:ENST00000409635.5:ENST00000435004.6:ENST00000428760.5:ENST00000392544.5:ENST00000417080.5:ENST00000456655.5:ENST00000421438.5:ENST00000429579.5:ENST00000415955.5:ENST00000409499.5:ENST00000478905.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	36	2	1.8707	1.991915	2.11313	0.0523213	0.0256725	0.160182	0.133676
chr8	65652080	65652180	3773510	0	+	0.56	(0.515,0.57]	chr8	349956	69	INTRON	INTRON	MTFR1	ENSG00000066855.16	ENST00000262146.9:ENST00000522239.5:ENST00000523222.5:ENST00000523170.5:ENST00000424808.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	36	2	1.8707	1.991915	2.11313	0.0523213	0.0256725	0.160182	0.133676
chr10	42807410	42807510	4428281	0	+	0.39	(0.378,0.408]	chr10	408133	48	INTRON	INTRON	BMS1	ENSG00000165733.8	ENST00000374518.6	protein_coding	protein_coding	protein_coding	protein_coding	12	121	2	1.95974	1.991905	2.02407	0.00680892	0.0034794	0.0711884	0.0541004
chr18	36147378	36147478	6891610	0	+	0.4	(0.378,0.408]	chr18	683023	6	INTRON	INTRON	ELP2	ENSG00000134759.14	ENST00000351393.10:ENST00000442325.6:ENST00000358232.11:ENST00000423854.6:ENST00000539560.5:ENST00000350494.10:ENST00000542824.5:ENST00000540799.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	14	137	2	1.67958	1.99173	2.30388	0.0077783	0.00207021	0.0787356	0.0411801
chr21	33560966	33561066	7397615	0	+	0.34	(0.32,0.35]	chr21	753541	4	INTRON	INTRON	SON	ENSG00000159140.22	ENST00000356577.10:ENST00000381692.6:ENST00000695559.1:ENST00000455528.5:ENST00000436227.5:ENST00000421541.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	94	2	1.86224	1.991725	2.12121	0.0203914	0.00650424	0.11076	0.0735144
chr21	39309748	39309847	7465504	0	-	0.545455	(0.515,0.57]	chr21	760568	108	INTRON	INTRON	BRWD1	ENSG00000185658.14	ENST00000333229.6:ENST00000342449.8:ENST00000380800.7:ENST00000341322.4:ENST00000470108.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	60	2	1.39706	1.99165	2.58624	0.041152	0.00526399	0.161534	0.0633874
chr7	105080325	105080420	3375303	0	+	0.242105	[0,0.28]	chr7	315941	10	INTRON	INTRON	KMT2E	ENSG00000005483.22	ENST00000257745.9:ENST00000334884.9:ENST00000311117.8:ENST00000478990.5:ENST00000476671.5:ENST00000667857.1:ENST00000482560.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	85	2	1.77685	1.991635	2.20642	0.0280845	0.0259533	0.133676	0.125065
chr7	152410741	152410840	3681041	0	-	0.525253	(0.515,0.57]	chr7	341660	517	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000682301.1:ENST00000452749.2:ENST00000680867.1:ENST00000683800.1:ENST00000684278.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	23	187	2	1.57513	1.99158	2.40803	0.00712473	8.50112e-5	0.0723634	0.00779856
chr1	45599589	45599687	93358	0	+	0.530612	(0.515,0.57]	chr1	12579	45	INTRON	INTRON	NASP	ENSG00000132780.17	ENST00000437901.6:ENST00000537798.5:ENST00000437362.6:ENST00000350030.8:ENST00000464190.6:ENST00000527359.5:ENST00000528084.5:ENST00000453748.5:ENST00000525515.5:ENST00000527470.5:ENST00000529333.5:ENST00000531532.5:ENST00000530840.5:ENST00000528238.5:ENST00000534101.1:ENST00000470768.5:ENST00000372052.8:ENST00000351223.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	34	2	1.63184	1.991545	2.35125	0.0545832	0.0436431	0.165292	0.162255
chr13	83023525	83023625	5633482	0	-	0.52	(0.515,0.57]	chr13	536804	2446	INTRON	INTRON	ENSG00000286385	ENSG00000286385.1	ENST00000663739.1	lncRNA	lncRNA	lncRNA	lncRNA	4	34	2	1.63184	1.991545	2.35125	0.0545832	0.0436431	0.165292	0.162255
chrX	77670662	77670762	7846296	0	-	0.55	(0.515,0.57]	chrX	800139	55	INTRON	INTRON	ATRX	ENSG00000085224.23	ENST00000373344.11:ENST00000395603.7:ENST00000480283.5:ENST00000624166.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	34	2	1.63184	1.991545	2.35125	0.0545832	0.0436431	0.165292	0.162255
chr19	28540176	28540276	7166497	0	-	0.24	[0,0.28]	chr19	724193	50	INTRON	INTRON	ENSG00000283403	ENSG00000283403.1	ENST00000592347.5	lncRNA	lncRNA	lncRNA	lncRNA	7	103	2	1.60899	1.9915	2.37401	0.0503341	0.00568456	0.156383	0.0678837
chr16	1456406	1456506	6428138	0	-	0.54	(0.515,0.57]	chr16	617969	2	SS3_PROX	SS3_PROX:INTRON	CLCN7	ENSG00000103249.18	ENST00000382745.9:ENST00000448525.5:ENST00000262318.12:ENST00000563822.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	43	2	1.54678	1.991335	2.43589	0.0370871	0.0324987	0.145164	0.139194
chr10	78040104	78040200	4475944	0	+	0.375	(0.35,0.378]	chr10	411990	23	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	RPS24	ENSG00000138326.21	ENST00000613865.5:ENST00000435275.5:ENST00000645440.1:ENST00000440692.6:ENST00000360830.9:ENST00000372360.9:ENST00000464716.6:ENST00000645698.1:ENST00000476545.6:ENST00000465692.2:ENST00000482069.5:ENST00000645195.1:ENST00000480662.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	12	113	2	1.36415	1.991205	2.61826	0.0288188	0.00206992	0.14021	0.0411801
chr7	75369933	75370033	3337768	0	+	0.53	(0.515,0.57]	chr7	310752	24	INTRON	INTRON	STAG3L1	ENSG00000205583.14	ENST00000619870.4:ENST00000404291.3	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	9	74	2	1.7112	1.99118	2.27116	0.0139408	0.00601759	0.095788	0.0700813
chr14	68052778	68052878	5767705	0	+	0.42	(0.408,0.44]	chr14	547066	521	INTRON	INTRON	RAD51B	ENSG00000182185.19	ENST00000487861.5:ENST00000471583.6:ENST00000479335.5:ENST00000487270.5:ENST00000488612.5:ENST00000553595.5:ENST00000497460.5:ENST00000492236.5:ENST00000554244.5:ENST00000478014.5:ENST00000469165.6:ENST00000460526.5:ENST00000468382.5:ENST00000557045.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	52	2	1.83501	1.991165	2.14732	0.0323448	0.0237354	0.133003	0.129075
chr16	24214816	24214914	6327575	0	+	0.397959	(0.378,0.408]	chr16	605811	1	UTR3	UTR3:EXON_MRNA:INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1	protein_coding	protein_coding	protein_coding	protein_coding	16	159	2	1.23875	1.991155	2.74356	0.0444179	7.20091e-5	0.149888	0.00706652
chr17	30737485	30737584	6589861	0	+	0.535354	(0.515,0.57]	chr17	640852	20	INTRON	INTRON	SUZ12P1	ENSG00000264538.7	ENST00000578070.5:ENST00000579526.5:ENST00000690405.1:ENST00000497969.6:ENST00000578195.6:ENST00000582557.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	11	92	2	1.61321	1.991045	2.36888	0.0202182	9.15531e-4	0.109913	0.027822
chr1	51355724	51355821	452689	0	-	0.298969	(0.28,0.32]	chr1	54288	16	UTR3	UTR3:EXON_MRNA	EPS15	ENSG00000085832.17	ENST00000371733.8:ENST00000371730.6	protein_coding	protein_coding	protein_coding	protein_coding	5	65	2	1.64432	1.991015	2.33771	0.0606133	0.0142701	0.171142	0.103838
chr21	21172362	21172462	7380733	0	+	0.29	(0.28,0.32]	chr21	752602	1734	INTRON	INTRON	NCAM2	ENSG00000154654.15	ENST00000400546.6	protein_coding	protein_coding	protein_coding	protein_coding	5	65	2	1.64432	1.991015	2.33771	0.0606133	0.0142701	0.171142	0.103838
chr1	65275910	65276010	135752	0	+	0.56	(0.515,0.57]	chr1	15346	106	INTRON	INTRON	DNAJC6	ENSG00000116675.16	ENST00000463018.5:ENST00000494710.6:ENST00000263441.11:ENST00000395325.7:ENST00000483402.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	83	2	1.43349	1.991005	2.54852	0.0378274	7.08868e-4	0.141117	0.0242289
chr1	21723019	21723113	396247	0	-	0.404255	(0.378,0.408]	chr1	47269	9	INTRON	INTRON	USP48	ENSG00000090686.16	ENST00000400301.5:ENST00000308271.14:ENST00000374732.7:ENST00000529637.5:ENST00000487880.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	101	2	1.83034	1.9909700000000001	2.1516	0.00851588	0.0065185	0.0833995	0.0699952
chr4	126523822	126523922	2235947	0	-	0.39	(0.378,0.408]	chr4	219023	583	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	5	53	2	1.68393	1.990955	2.29798	0.0503034	0.0147606	0.156383	0.106702
chr11	94484039	94484139	5018474	0	-	0.38	(0.378,0.408]	chr11	473429	2	SS3_PROX	SS3_PROX:INTRON	MRE11	ENSG00000020922.13	ENST00000323929.8:ENST00000407439.7:ENST00000323977.7:ENST00000393241.8:ENST00000540013.5:ENST00000541157.5:ENST00000536754.5:ENST00000538923.1:ENST00000536144.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	39	2	1.59317	1.9909499999999998	2.38873	0.0603812	0.0458857	0.19151	0.149888
chr12	57069233	57069299	5336751	0	-	0.393939	(0.378,0.408]	chr12	510364	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	NEMP1	ENSG00000166881.10	ENST00000300128.9:ENST00000379391.7:ENST00000554340.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	121	2	1.97577	1.99077	2.00577	0.00823929	0.00279033	0.0773252	0.0488769
chr2	174089848	174089948	1269261	0	-	0.39	(0.378,0.408]	chr2	134263	74	INTRON	INTRON	OLA1	ENSG00000138430.16	ENST00000284719.8:ENST00000344357.9:ENST00000428402.6:ENST00000409546.5:ENST00000392560.6:ENST00000462000.1:ENST00000429575.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	49	2	1.52219	1.990755	2.45932	0.0531838	0.0346754	0.162538	0.148144
chr1	150612849	150612948	551212	0	-	0.444444	(0.44,0.476]	chr1	64776	112	INTRON	INTRON	ENSA	ENSG00000143420.19	ENST00000369016.8	protein_coding	protein_coding	protein_coding	protein_coding	4	42	2	1.9039	1.9907499999999998	2.0776	0.0501498	0.0292951	0.156383	0.141862
chr17	75900552	75900652	6839059	0	-	0.47	(0.44,0.476]	chr17	676127	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MRPL38	ENSG00000204316.13	ENST00000309352.4:ENST00000480203.5:ENST00000477371.5:ENST00000477023.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	42	2	1.9039	1.9907499999999998	2.0776	0.0501498	0.0292951	0.156383	0.141862
chr2	86973386	86973479	824739	0	+	0.473118	(0.44,0.476]	chr2	92155	11	INTRON	INTRON	RGPD1	ENSG00000187627.17	ENST00000409776.6:ENST00000398193.8:ENST00000641458.2	protein_coding	protein_coding	protein_coding	protein_coding	4	42	2	1.9039	1.9907499999999998	2.0776	0.0501498	0.0292951	0.156383	0.141862
chr22	18565613	18565713	7551008	0	-	0.46	(0.44,0.476]	chr22	771829	127	INTRON	INTRON	PI4KAP1	ENSG00000274602.5	ENST00000612500.4:ENST00000611748.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	4	42	2	1.9039	1.9907499999999998	2.0776	0.0501498	0.0292951	0.156383	0.141862
chr22	19339417	19339516	7553477	0	-	0.464646	(0.44,0.476]	chr22	772184	75	INTRON	INTRON	HIRA	ENSG00000100084.14	ENST00000263208.5:ENST00000340170.8	protein_coding	protein_coding	protein_coding	protein_coding	4	42	2	1.9039	1.9907499999999998	2.0776	0.0501498	0.0292951	0.156383	0.141862
chr11	5464988	5465088	4897871	0	-	0.54	(0.515,0.57]	chr11	459193	236	INTRON	INTRON	HBG2:ENSG00000239920:HBE1:OR51B5	ENSG00000196565.15:ENSG00000239920.2:ENSG00000213931.7:ENSG00000167355.8	ENST00000380252.6:ENST00000380259.7:ENST00000292896.3:ENST00000380237.5:ENST00000420726.6:ENST00000420465.6:ENST00000415970.6:ENST00000418729.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:nonsense_mediated_decay:processed_transcript	6	52	2	1.811	1.9906949999999999	2.17039	0.0325989	0.00900252	0.133687	0.0851009
chr6	87224535	87224635	2913955	0	+	0.33	(0.32,0.35]	chr6	275311	7	INTRON	INTRON	ZNF292	ENSG00000188994.13	ENST00000369577.8:ENST00000518845.1:ENST00000339907.8:ENST00000496806.2	protein_coding	protein_coding	protein_coding	protein_coding	6	69	2	1.45026	1.9906650000000001	2.53107	0.0622478	0.00860484	0.194723	0.0784134
chr2	151796001	151796101	1243410	0	-	0.35	(0.32,0.35]	chr2	132026	37	INTRON	INTRON	ARL5A	ENSG00000162980.17	ENST00000446896.7	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	14	150	2	1.87922	1.9906449999999998	2.10207	0.0089151	0.00286694	0.0799896	0.0494641
chr1	52377680	52377779	456790	0	-	0.323232	(0.32,0.35]	chr1	54847	17	INTRON	INTRON	ORC1	ENSG00000085840.13	ENST00000371568.8:ENST00000371566.1	protein_coding	protein_coding	protein_coding	protein_coding	5	60	2	1.67393	1.99062	2.30731	0.0496128	0.0176772	0.174685	0.10525
chr22	19091986	19092085	7551710	0	-	0.343434	(0.32,0.35]	chr22	771903	21	INTRON	INTRON	DGCR2	ENSG00000070413.20	ENST00000537045.5:ENST00000545799.5:ENST00000263196.12:ENST00000389262.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	60	2	1.67393	1.99062	2.30731	0.0496128	0.0176772	0.174685	0.10525
chr9	97573428	97573528	4172316	0	+	0.35	(0.32,0.35]	chr9	380118	40	INTRON	INTRON	TMOD1	ENSG00000136842.14	ENST00000395211.6:ENST00000259365.9:ENST00000375175.1	protein_coding	protein_coding	protein_coding	protein_coding	5	60	2	1.67393	1.99062	2.30731	0.0496128	0.0176772	0.174685	0.10525
chr3	177063032	177063131	1871085	0	-	0.535354	(0.515,0.57]	chr3	187360	88	INTRON	INTRON	TBL1XR1	ENSG00000177565.18	ENST00000457928.7:ENST00000430069.5:ENST00000673974.1:ENST00000631253.2:ENST00000352800.10:ENST00000422442.6:ENST00000428970.5:ENST00000424913.5:ENST00000437738.5:ENST00000431421.5:ENST00000635794.1:ENST00000630796.2:ENST00000450267.5:ENST00000630833.2:ENST00000431674.5:ENST00000422066.5:ENST00000443315.5:ENST00000627825.2:ENST00000427349.5:ENST00000413084.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	52	2	1.91916	1.9906099999999998	2.06206	0.0231902	0.0135396	0.118148	0.101363
chr17	67909181	67909281	6668553	0	+	0.52	(0.515,0.57]	chr17	650601	2	SS3_PROX	SS3_PROX:INTRON	BPTF	ENSG00000171634.19	ENST00000306378.11:ENST00000544778.6:ENST00000321892.8:ENST00000342579.8:ENST00000644067.1:ENST00000424123.7	protein_coding	protein_coding	protein_coding	protein_coding	10	69	2	1.26017	1.990485	2.7208	0.04508	0.00306828	0.163403	0.0494933
chr1	31926753	31926852	414319	0	-	0.40404	(0.378,0.408]	chr1	49920	22	INTRON	INTRON	PTP4A2	ENSG00000184007.22	ENST00000647444.2:ENST00000649841.1:ENST00000468531.1:ENST00000534796.5:ENST00000532289.1:ENST00000526960.1:ENST00000524384.5:ENST00000528840.1:ENST00000494444.2:ENST00000529477.5:ENST00000533408.1:ENST00000475464.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	63	2	1.8252	1.9904700000000002	2.15574	0.0619563	0.00519611	0.174514	0.0654762
chr17	46128434	46128534	6784220	0	-	0.29	(0.28,0.32]	chr17	669216	72	INTRON	INTRON	KANSL1	ENSG00000120071.15	ENST00000574590.6:ENST00000572904.6:ENST00000432791.7:ENST00000575318.6:ENST00000638275.1:ENST00000262419.10:ENST00000648792.1:ENST00000639531.1:ENST00000639150.1:ENST00000639853.1:ENST00000571698.2:ENST00000639375.1:ENST00000638269.1:ENST00000576248.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	66	2	1.76293	1.9904549999999999	2.21798	0.0766478	0.00901091	0.196164	0.0851009
chr2	69941259	69941358	805775	0	+	0.454545	(0.44,0.476]	chr2	89939	31	UTR3	UTR3:EXON_MRNA:INTRON	MXD1	ENSG00000059728.11	ENST00000540449.5:ENST00000264444.7:ENST00000465446.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	124	2	1.94639	1.99041	2.03443	0.00616397	0.00271426	0.067653	0.0481064
chr13	27254374	27254467	5459404	0	+	0.387097	(0.378,0.408]	chr13	523094	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	RPL21	ENSG00000122026.11	ENST00000473558.5:ENST00000311549.11:ENST00000461690.5:ENST00000272274.8:ENST00000319826.8:ENST00000326092.8:ENST00000493317.1:ENST00000483765.5:ENST00000466550.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	19	188	2	1.66979	1.9903499999999998	2.31091	0.0068876	5.71091e-4	0.0717484	0.0217398
chr19	12093995	12094065	7020920	0	+	0.328571	(0.32,0.35]	chr19	697992	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ENSG00000286132:ZNF788P	ENSG00000286132.1:ENSG00000214189.9	ENST00000651606.1:ENST00000596096.1:ENST00000601686.1:ENST00000595703.5:ENST00000397755.2:ENST00000596883.2:ENST00000430298.7	protein_coding	nonsense_mediated_decay	protein_coding:transcribed_unprocessed_pseudogene	nonsense_mediated_decay:processed_transcript:transcribed_unprocessed_pseudogene	4	44	2	1.67393	1.99033	2.30673	0.0584434	0.0496128	0.174685	0.167723
chr2	61335366	61335466	1129177	0	-	0.33	(0.32,0.35]	chr2	121404	10	INTRON	INTRON	USP34	ENSG00000115464.15	ENST00000398571.7	protein_coding	protein_coding	protein_coding	protein_coding	4	44	2	1.67393	1.99033	2.30673	0.0584434	0.0496128	0.174685	0.167723
chr17	57992669	57992768	6799903	0	-	0.363636	(0.35,0.378]	chr17	671422	30	EXON_LNCRNA	EXON_LNCRNA:INTRON	ENSG00000266086:ENSG00000264112	ENSG00000266086.3:ENSG00000264112.1	ENST00000578794.2:ENST00000665125.1:ENST00000577267.1:ENST00000585065.1	protein_coding	nonsense_mediated_decay	protein_coding:lncRNA	nonsense_mediated_decay:lncRNA:processed_transcript	14	144	2	1.69295	1.9903149999999998	2.28768	0.00763358	0.00240273	0.0777257	0.0440913
chr2	43951199	43951299	1110157	0	-	0.33	(0.32,0.35]	chr2	119070	2	INTRON	INTRON	LRPPRC	ENSG00000138095.20	ENST00000260665.12:ENST00000682308.1:ENST00000683459.1:ENST00000683623.1:ENST00000683125.1:ENST00000683994.1:ENST00000684619.1:ENST00000683833.1:ENST00000682546.1:ENST00000682585.1:ENST00000683220.1:ENST00000683796.1:ENST00000682607.1:ENST00000683590.1:ENST00000684306.1:ENST00000683213.1:ENST00000682779.1:ENST00000682885.1:ENST00000684743.1:ENST00000683346.1:ENST00000683072.1:ENST00000682303.1:ENST00000683329.1:ENST00000682933.1:ENST00000684383.1:ENST00000682480.1:ENST00000684290.1:ENST00000684341.1:ENST00000682595.1:ENST00000683645.1:ENST00000683802.1:ENST00000681961.1:ENST00000683694.1:ENST00000683989.1:ENST00000447246.2:ENST00000409659.6:ENST00000682104.1:ENST00000683934.1:ENST00000681959.1:ENST00000684482.1:ENST00000683082.1:ENST00000467058.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	108	2	1.65179	1.9902900000000001	2.32879	0.0245569	0.00373122	0.131869	0.0535844
chr13	20086309	20086408	5453741	0	+	0.393939	(0.378,0.408]	chr13	522591	4	UTR3	UTR3:EXON_MRNA	ZMYM2	ENSG00000121741.17	ENST00000382874.6:ENST00000610343.5:ENST00000382871.3:ENST00000382883.7:ENST00000382870.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	53	2	1.72045	1.99027	2.26009	0.0424671	0.0188651	0.161763	0.108861
chr1	70224871	70224970	142626	0	+	0.333333	(0.32,0.35]	chr1	15978	17	INTRON	INTRON	SRSF11	ENSG00000116754.14	ENST00000370951.5:ENST00000463877.1:ENST00000687381.1:ENST00000370950.7:ENST00000475204.5:ENST00000370949.2:ENST00000395136.7:ENST00000473950.5:ENST00000469170.5:ENST00000486667.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	19	202	2	1.6579	1.9900349999999998	2.32217	0.00538945	0.00155397	0.066545000000000007	0.0359141
chr17	70123669	70123768	6828685	0	-	0.353535	(0.35,0.378]	chr17	675009	505	INTRON	INTRON	ENSG00000230258	ENSG00000230258.6	ENST00000435112.5	lncRNA	lncRNA	lncRNA	lncRNA	11	119	2	1.74668	1.99001	2.23334	0.0198631	0.00138634	0.109608	0.0341261
chr22	26548907	26549005	7564653	0	-	0.469388	(0.44,0.476]	chr22	774040	9	INTRON	INTRON	TPST2	ENSG00000128294.16	ENST00000338754.9:ENST00000403880.5:ENST00000398110.6:ENST00000442495.5:ENST00000454778.5:ENST00000440953.5:ENST00000453117.1:ENST00000450022.1	protein_coding	protein_coding	protein_coding	protein_coding	6	61	2	1.94723	1.989945	2.03266	0.0227424	0.0155853	0.117618	0.109411
chr12	56684680	56684780	5336045	0	-	0.43	(0.408,0.44]	chr12	510192	113	INTRON	INTRON	PTGES3	ENSG00000110958.16	ENST00000537473.2:ENST00000614328.4:ENST00000262033.11:ENST00000414274.7:ENST00000436399.6:ENST00000448157.6:ENST00000456859.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	92	2	1.71548	1.98994	2.2644	0.0101701	0.00768371	0.089002	0.0753803
chr11	62135944	62136043	4797998	0	+	0.545455	(0.515,0.57]	chr11	444484	50	INTRON	INTRON	INCENP	ENSG00000149503.13	ENST00000278849.4:ENST00000394818.8:ENST00000528037.1:ENST00000528375.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	36	2	1.79136	1.98993	2.1885	0.0638444	0.0202537	0.177811	0.121364
chr17	49351808	49351908	6792447	0	-	0.52	(0.515,0.57]	chr17	670175	289	INTRON	INTRON	ZNF652	ENSG00000198740.9	ENST00000430262.3:ENST00000508237.5:ENST00000362063.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	36	2	1.79136	1.98993	2.1885	0.0638444	0.0202537	0.177811	0.121364
chr17	57332323	57332423	6633512	0	+	0.54	(0.515,0.57]	chr17	648024	216	INTRON	INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000581776.5:ENST00000674961.1:ENST00000582453.5:ENST00000675656.1:ENST00000322684.7:ENST00000579590.5:ENST00000676073.1:ENST00000675822.1:ENST00000442934.6:ENST00000579180.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	36	2	1.79136	1.98993	2.1885	0.0638444	0.0202537	0.177811	0.121364
chr5	54071628	54071728	2618522	0	-	0.53	(0.515,0.57]	chr5	248837	235	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	36	2	1.79136	1.98993	2.1885	0.0638444	0.0202537	0.177811	0.121364
chr9	111469205	111469304	4315141	0	-	0.555556	(0.515,0.57]	chr9	396838	173	INTRON	INTRON	ECPAS	ENSG00000136813.15	ENST00000684092.1:ENST00000338205.9:ENST00000259335.8:ENST00000602447.5:ENST00000602978.1	protein_coding	protein_coding	protein_coding	protein_coding	4	36	2	1.79136	1.98993	2.1885	0.0638444	0.0202537	0.177811	0.121364
chr16	85555966	85556056	6415390	0	+	0.588889	(0.57,1]	chr16	615466	1	UTR5	UTR5:EXON_MRNA:INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	18	85	2	1.65509	1.989925	2.32476	0.00405873	5.62132e-4	0.0557922	0.0216503
chr8	109335640	109335738	3847470	0	+	0.326531	(0.32,0.35]	chr8	354345	13	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	ENY2	ENSG00000120533.13	ENST00000521662.5:ENST00000522766.5:ENST00000517311.5:ENST00000339942.11:ENST00000520147.5:ENST00000519754.5:ENST00000521688.6:ENST00000522407.5:ENST00000522632.1:ENST00000523335.1:ENST00000517756.5:ENST00000518584.5:ENST00000517350.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	68	2	1.84365	1.989925	2.1362	0.0291083	0.0184323	0.128029	0.116493
chr10	100940532	100940632	4509285	0	+	0.56	(0.515,0.57]	chr10	415249	14	INTRON	INTRON	SLF2	ENSG00000119906.13	ENST00000238961.9:ENST00000649226.1:ENST00000370269.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	36	2	1.9459	1.989755	2.03361	0.0429089	0.0325854	0.148082	0.145164
chr19	7937949	7938026	7130269	0	-	0.532468	(0.515,0.57]	chr19	718336	3	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	TIMM44	ENSG00000104980.8	ENST00000270538.8:ENST00000595831.5:ENST00000595876.5:ENST00000597926.1:ENST00000600748.5:ENST00000600000.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	36	2	1.9459	1.989755	2.03361	0.0429089	0.0325854	0.148082	0.145164
chr1	227293805	227293905	651474	0	-	0.29	(0.28,0.32]	chr1	77110	287	INTRON	INTRON	CDC42BPA	ENSG00000143776.20	ENST00000366766.8:ENST00000366769.7:ENST00000334218.9:ENST00000366767.7:ENST00000366764.8:ENST00000478573.6:ENST00000682551.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	128	2	1.97163	1.989745	2.00786	0.0105487	0.00687366	0.0860903	0.0749442
chr18	679529	679626	6939429	0	-	0.43299	(0.408,0.44]	chr18	686388	4	INTRON	INTRON	ENOSF1	ENSG00000132199.20	ENST00000647584.2:ENST00000383578.7:ENST00000584259.6:ENST00000340116.12:ENST00000581475.5:ENST00000582745.5:ENST00000580982.5:ENST00000585128.6:ENST00000583973.5:ENST00000581928.5:ENST00000584453.5:ENST00000584706.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	51	2	1.58763	1.9896250000000002	2.39162	0.0639217	0.0105837	0.177824	0.0911864
chr17	30734453	30734551	6589830	0	+	0.336735	(0.32,0.35]	chr17	640847	5	EXON_LNCRNA	EXON_LNCRNA:SS3_PROX:INTRON	SUZ12P1	ENSG00000264538.7	ENST00000578070.5:ENST00000579526.5:ENST00000690405.1:ENST00000497969.6:ENST00000578195.6:ENST00000582557.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	13	146	2	1.47087	1.98957	2.50827	0.0282825	6.16567e-4	0.125858	0.0223951
chr6	10928850	10928950	2812184	0	+	0.32	(0.28,0.32]	chr6	264643	4	SS5_PROX	SS5_PROX:INTRON	SYCP2L	ENSG00000153157.13	ENST00000341041.8:ENST00000283141.11:ENST00000543878.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	13	167	2	1.98748	1.9895	1.99152	0.0056611	0.00509793	0.0653997	0.0646039
chr22	19493231	19493330	7476969	0	+	0.353535	(0.35,0.378]	chr22	762407	89	INTRON	INTRON	CDC45	ENSG00000093009.11	ENST00000407835.6:ENST00000437685.6:ENST00000483431.5:ENST00000438587.6:ENST00000672837.1:ENST00000263201.7:ENST00000404724.7:ENST00000487669.5:ENST00000428937.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	15	152	2	1.41355	1.9894349999999998	2.56532	0.0252542	4.08385e-4	0.12011	0.0181306
chr19	5709825	5709921	7124606	0	-	0.5625	(0.515,0.57]	chr19	717144	10	INTRON	INTRON	LONP1	ENSG00000196365.12	ENST00000360614.8:ENST00000587552.5:ENST00000540670.6:ENST00000593119.5:ENST00000585374.5:ENST00000590558.5:ENST00000590729.5:ENST00000587365.1:ENST00000586617.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	30	239	2	1.56388	1.9892949999999998	2.41471	0.00480431	4.7063e-5	0.0602209	0.00559855
chr16	85499289	85499389	6414823	0	+	0.42	(0.408,0.44]	chr16	615465	1400	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	5	54	2	1.93243	1.98927	2.04611	0.0441194	0.016628	0.162255	0.102621
chr6	4053073	4053173	2790027	0	+	0.33	(0.32,0.35]	chr6	263540	2	SS5_PROX	SS5_PROX:INTRON	PRPF4B	ENSG00000112739.17	ENST00000480058.5:ENST00000337659.11:ENST00000481109.5:ENST00000463634.6:ENST00000466185.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	91	2	1.787	1.989255	2.19151	0.0151818	0.0114722	0.108535	0.0888882
chr2	171926041	171926141	918396	0	+	0.32	(0.28,0.32]	chr2	101182	4	SS5_PROX	SS5_PROX:INTRON	HAT1	ENSG00000128708.13	ENST00000412731.5:ENST00000264108.5:ENST00000457761.6:ENST00000494601.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	78	2	1.76048	1.98923	2.21798	0.0450149	0.00901091	0.149888	0.0851009
chr22	16803189	16803288	7546432	0	-	0.282828	(0.28,0.32]	chr22	771321	28	INTRON	INTRON	XKR3	ENSG00000172967.8	ENST00000331428.5:ENST00000684488.1	protein_coding	protein_coding	protein_coding	protein_coding	9	97	2	1.41075	1.9891999999999999	2.56765	0.0359835	0.00835086	0.152355	0.0774402
chr3	177024504	177024603	1870672	0	-	0.292929	(0.28,0.32]	chr3	187269	53	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	TBL1XR1	ENSG00000177565.18	ENST00000636864.1:ENST00000457928.7:ENST00000430069.5:ENST00000637659.1:ENST00000474363.1:ENST00000673974.1:ENST00000631253.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	78	2	1.83303	1.989185	2.14534	0.0370023	0.0117054	0.139194	0.0962115
chr19	48382753	48382843	7198945	0	-	0.466667	(0.44,0.476]	chr19	729758	3	UTR3	UTR3:EXON_MRNA	KDELR1	ENSG00000105438.9	ENST00000330720.7:ENST00000597017.5	protein_coding	protein_coding	protein_coding	protein_coding	19	152	2	1.08691	1.989165	2.89142	0.0450092	1.92791e-4	0.163255	0.0127226
chrX	78127216	78127315	7687259	0	+	0.353535	(0.35,0.378]	chrX	787044	15	UTR3	UTR3:EXON_MRNA	PGK1	ENSG00000102144.15	ENST00000373316.5	protein_coding	protein_coding	protein_coding	protein_coding	9	100	2	1.60653	1.9891649999999998	2.3718	0.0427748	0.00112328	0.148082	0.0308177
chr11	120411538	120411638	4876955	0	+	0.29	(0.28,0.32]	chr11	455814	22	EXON_MRNA	EXON_MRNA:INTRON	ARHGEF12	ENSG00000196914.9	ENST00000397843.7:ENST00000356641.7:ENST00000532993.5:ENST00000529970.5:ENST00000530388.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	74	2	1.79739	1.989155	2.18092	0.0271832	0.0224995	0.124921	0.123904
chr20	5590542	5590641	7312137	0	-	0.363636	(0.35,0.378]	chr20	744600	39	INTRON	INTRON	GPCPD1	ENSG00000125772.14	ENST00000379019.7:ENST00000481690.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	46	2	1.93432	1.98895	2.04358	0.0481438	0.0329533	0.153019	0.145171
chr8	100306798	100306898	4004395	0	-	0.28	[0,0.28]	chr8	366481	30	INTRON	INTRON	RNF19A	ENSG00000034677.13	ENST00000341084.7:ENST00000519527.5:ENST00000523167.1:ENST00000522369.5:ENST00000523481.5:ENST00000522182.1:ENST00000519342.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	103	2	1.85833	1.98894	2.11955	0.0378973	0.00795999	0.141283	0.0798772
chr10	74238847	74238947	4456647	0	+	0.43	(0.408,0.44]	chr10	411547	139	INTRON	INTRON	ADK	ENSG00000156110.15	ENST00000672429.1:ENST00000539909.6:ENST00000286621.7:ENST00000673352.1:ENST00000673310.1:ENST00000672920.1:ENST00000672394.1:ENST00000372734.5:ENST00000673027.1:ENST00000541550.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	48	2	1.58026	1.98888	2.3975	0.0444624	0.040266	0.161534	0.149888
chr13	19691889	19691989	5552024	0	-	0.49	(0.476,0.515]	chr13	530672	129	INTRON	INTRON	PSPC1	ENSG00000121390.19	ENST00000471658.5:ENST00000492741.5:ENST00000635562.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	3	31	2	1.8388	1.98867	2.13854	0.0776563	0.0564473	0.196285	0.184423
chr3	33835943	33836043	1394776	0	+	0.29	(0.28,0.32]	chr3	146086	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	PDCD6IP	ENSG00000170248.15	ENST00000457054.6:ENST00000648706.1:ENST00000307296.8:ENST00000412887.5:ENST00000482561.1:ENST00000487821.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	103	2	1.64082	1.9886599999999999	2.3365	0.0422774	0.00286158	0.148082	0.0494641
chr19	34400729	34400828	7052864	0	+	0.525253	(0.515,0.57]	chr19	703434	8	UTR3	UTR3:EXON_MRNA	GPI	ENSG00000105220.17	ENST00000415930.8:ENST00000356487.11	protein_coding	protein_coding	protein_coding	protein_coding	16	134	2	1.9435500000000001	1.9886300000000001	2.03371	0.00308285	0.00181313	0.0510391	0.0384415
chr17	70062576	70062676	6828073	0	-	0.43	(0.408,0.44]	chr17	675005	85	INTRON	INTRON	ENSG00000230258	ENSG00000230258.6	ENST00000435112.5:ENST00000587325.1	lncRNA	lncRNA	lncRNA	lncRNA	5	51	2	1.94273	1.98852	2.03431	0.0456237	0.0154896	0.149888	0.108998
chr19	946907	947007	6992699	0	+	0.44	(0.408,0.44]	chr19	692392	138	INTRON	INTRON	ARID3A	ENSG00000116017.11	ENST00000263620.8:ENST00000587532.5:ENST00000457152.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	51	2	1.94273	1.98852	2.03431	0.0456237	0.0154896	0.149888	0.108998
chr16	89485242	89485342	6543549	0	-	0.47	(0.44,0.476]	chr16	634281	536	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	19	181	2	1.94013	1.9884899999999999	2.03685	0.00232626	0.00142967	0.0431842	0.0347139
chr19	4421068	4421167	7001948	0	+	0.424242	(0.408,0.44]	chr19	694529	26	INTRON	INTRON	CHAF1A	ENSG00000167670.16	ENST00000301280.10:ENST00000587739.1:ENST00000585371.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	109	2	1.81794	1.9884399999999998	2.15894	0.00805514	0.00504142	0.0766625	0.0646039
chr15	63234067	63234167	6041202	0	+	0.49	(0.476,0.515]	chr15	575244	97	INTRON	INTRON	RAB8B	ENSG00000166128.13	ENST00000558990.5:ENST00000558119.5:ENST00000559927.1:ENST00000321437.9:ENST00000559006.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	38	2	1.74317	1.9882600000000001	2.23335	0.0634557	0.0396373	0.177047	0.161534
chr3	138699395	138699495	1830131	0	-	0.51	(0.476,0.515]	chr3	183985	3	SS3_PROX	SS3_PROX:INTRON	PIK3CB	ENSG00000051382.9	ENST00000674063.1:ENST00000289153.6:ENST00000477593.5:ENST00000469284.6:ENST00000544716.5:ENST00000462898.5:ENST00000481749.5:ENST00000493568.5:ENST00000473435.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	38	2	1.74317	1.9882600000000001	2.23335	0.0634557	0.0396373	0.177047	0.161534
chr1	219206829	219206929	318710	0	+	0.22	[0,0.28]	chr1	36461	77	INTRON	INTRON	LYPLAL1	ENSG00000143353.12	ENST00000460522.5:ENST00000366927.3:ENST00000366928.10:ENST00000477938.5:ENST00000463964.5:ENST00000483635.5:ENST00000474379.5:ENST00000469590.5:ENST00000478794.5:ENST00000475724.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	62	2	1.95356	1.988105	2.02265	0.0463152	0.0449017	0.166231	0.149888
chr21	9356012	9356112	7367693	0	+	0.45	(0.44,0.476]	chr21	751936	18	INTRON	INTRON	ENSG00000278932	ENSG00000278932.5	ENST00000622961.3:ENST00000686553.1:ENST00000691955.1:ENST00000692626.1:ENST00000685951.1:ENST00000686510.1:ENST00000692884.1	lncRNA	lncRNA	lncRNA	lncRNA	11	104	2	1.74196	1.988105	2.23425	0.00909881	0.00441123	0.0855292	0.0587529
chr17	82476976	82477075	6692451	0	+	0.545455	(0.515,0.57]	chr17	654573	39	INTRON	INTRON	NARF	ENSG00000141562.19	ENST00000390006.8:ENST00000345415.11:ENST00000581202.5:ENST00000374611.9:ENST00000457415.7:ENST00000581795.5:ENST00000577812.5:ENST00000581743.5:ENST00000577432.5:ENST00000582907.5:ENST00000309794.16:ENST00000578082.5:ENST00000577410.2:ENST00000579083.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	66	2	1.86218	1.98801	2.11384	0.0118599	0.0100169	0.0899583	0.0880217
chr2	241679928	241680028	1349367	0	-	0.39	(0.378,0.408]	chr2	141794	3	SS5_PROX	SS5_PROX:INTRON	DTYMK	ENSG00000168393.13	ENST00000400770.6:ENST00000305784.7:ENST00000445261.5:ENST00000432348.5:ENST00000420144.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	81	2	1.67073	1.98786	2.30499	0.0219426	0.00683258	0.123836	0.0713163
chr11	62885706	62885804	4799647	0	+	0.397959	(0.378,0.408]	chr11	444844	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	SLC3A2	ENSG00000168003.18	ENST00000680729.1:ENST00000680002.1:ENST00000681467.1:ENST00000377890.6:ENST00000538084.2:ENST00000681569.1:ENST00000680725.1:ENST00000377891.6:ENST00000377889.6:ENST00000681215.1:ENST00000535296.5:ENST00000680631.1:ENST00000544377.2:ENST00000680610.1:ENST00000680297.1:ENST00000680134.1:ENST00000681232.1:ENST00000681657.1:ENST00000541425.6:ENST00000679908.1:ENST00000681563.1:ENST00000338663.12:ENST00000680654.1:ENST00000681107.1:ENST00000541649.2:ENST00000538682.6:ENST00000536981.6:ENST00000539891.6:ENST00000679594.1:ENST00000535768.2:ENST00000457660.6:ENST00000542922.5:ENST00000539507.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	46	2	1.66594	1.987775	2.30961	0.055088	0.0320222	0.165463	0.144995
chr4	126614591	126614691	2236855	0	-	0.47	(0.44,0.476]	chr4	219023	1491	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	31	273	2	1.75221	1.9877699999999998	2.22333	0.00122726	7.11996e-4	0.0325639	0.024437
chr3	196063107	196063192	1897350	0	-	0.305882	(0.28,0.32]	chr3	189925	3	EXON_MRNA	EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TFRC	ENSG00000072274.13	ENST00000420415.5:ENST00000360110.9:ENST00000392396.7:ENST00000465288.5:ENST00000477148.1:ENST00000464368.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	21	213	2	1.51129	1.9877500000000001	2.46421	0.00839893	0.00248809	0.0824581	0.0446195
chr10	50620309	50620409	4620654	0	-	0.4	(0.378,0.408]	chr10	425458	297	INTRON	INTRON	SGMS1	ENSG00000198964.14	ENST00000429490.5:ENST00000361781.7:ENST00000619438.4:ENST00000609445.5:ENST00000608287.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	44	2	1.97143	1.987705	2.00398	0.0398704	0.0393906	0.161534	0.143072
chr17	61850445	61850544	6808809	0	-	0.383838	(0.378,0.408]	chr17	672623	8	INTRON	INTRON	BRIP1	ENSG00000136492.10	ENST00000259008.7:ENST00000682755.1:ENST00000682453.1:ENST00000683039.1:ENST00000682989.1:ENST00000682589.1:ENST00000683235.1:ENST00000682477.1:ENST00000577598.5:ENST00000584322.2:ENST00000683381.1:ENST00000577913.2:ENST00000682369.1:ENST00000683672.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	44	2	1.97143	1.987705	2.00398	0.0398704	0.0393906	0.161534	0.143072
chr2	31990091	31990191	1090912	0	-	0.39	(0.378,0.408]	chr2	116913	269	INTRON	INTRON	MEMO1:DPY30	ENSG00000162959.14:ENSG00000162961.14	ENST00000295065.9:ENST00000446765.5:ENST00000404530.6:ENST00000490459.5:ENST00000426310.6:ENST00000413686.1:ENST00000407893.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	44	2	1.97143	1.987705	2.00398	0.0398704	0.0393906	0.161534	0.143072
chr21	10425486	10425586	7368249	0	+	0.53	(0.515,0.57]	chr21	751975	102	INTRON	INTRON	BAGE2	ENSG00000187172.15	ENST00000474011.5:ENST00000470054.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	6	52	2	1.75372	1.98769	2.22166	0.0386904	0.00735516	0.14279	0.0765982
chr2	222894096	222894195	1021546	0	+	0.292929	(0.28,0.32]	chr2	109272	14	INTRON	INTRON	ACSL3	ENSG00000123983.15	ENST00000392066.7:ENST00000407441.5:ENST00000680251.1:ENST00000679541.1:ENST00000681906.1:ENST00000679545.1:ENST00000679932.1:ENST00000680100.1:ENST00000680475.1:ENST00000680525.1:ENST00000680420.1:ENST00000681326.1:ENST00000681292.1:ENST00000681017.1:ENST00000680382.1:ENST00000535678.2:ENST00000680395.1:ENST00000680736.1:ENST00000679546.1:ENST00000680147.1:ENST00000357430.8:ENST00000681009.1:ENST00000679514.1:ENST00000681697.1:ENST00000680921.1:ENST00000681383.1:ENST00000413316.1:ENST00000679558.1:ENST00000680684.1:ENST00000680424.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	48	2	1.71442	1.98766	2.2609	0.0671429	0.0454351	0.183051	0.164236
chr2	31962371	31962471	1090634	0	-	0.37	(0.35,0.378]	chr2	116908	186	INTRON	INTRON	MEMO1:DPY30	ENSG00000162959.14:ENSG00000162961.14	ENST00000295065.9:ENST00000446765.5:ENST00000404530.6:ENST00000379383.7:ENST00000490459.5:ENST00000426310.6:ENST00000413686.1:ENST00000407893.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	41	2	1.65083	1.98763	2.32443	0.0544216	0.0521072	0.177022	0.164972
chr7	121150942	121151042	3395278	0	+	0.52	(0.515,0.57]	chr7	317781	9	INTRON	INTRON	CPED1	ENSG00000106034.18	ENST00000310396.10:ENST00000450913.6:ENST00000423795.5:ENST00000466055.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	27	208	2	1.46407	1.987495	2.51092	0.0078398	5.90932e-5	0.0761278	0.00631109
chr1	149884552	149884647	549575	0	-	0.431579	(0.408,0.44]	chr1	64526	2	UTR3	UTR3:EXON_MRNA	H2BC21	ENSG00000184678.11	ENST00000369155.4	protein_coding	protein_coding	protein_coding	protein_coding	17	114	2	1.15034	1.9874749999999999	2.82461	0.0355009	0.00241819	0.151271	0.0442901
chr7	105015734	105015834	3374633	0	+	0.38	(0.378,0.408]	chr7	315854	8	INTRON	INTRON	KMT2E	ENSG00000005483.22	ENST00000622386.2:ENST00000257745.9:ENST00000334884.9:ENST00000311117.8:ENST00000478990.5:ENST00000480368.5:ENST00000495267.5:ENST00000476671.5:ENST00000667857.1:ENST00000474203.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	13	125	2	1.90616	1.9874399999999999	2.06872	0.00895678	0.00266058	0.0800073	0.0476028
chr1	20760524	20760623	389591	0	-	0.515152	(0.476,0.515]	chr1	46537	29	INTRON	INTRON	HP1BP3	ENSG00000127483.19	ENST00000438032.6:ENST00000312239.10:ENST00000375003.6:ENST00000419948.5:ENST00000424732.5	protein_coding	protein_coding	protein_coding	protein_coding	14	115	2	1.53041	1.9874100000000001	2.44441	0.0108206	0.0036718	0.0920575	0.0535094
chr2	95101917	95102014	1177412	0	-	0.43299	(0.408,0.44]	chr2	125626	3	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	MRPS5	ENSG00000289685.1	ENST00000272418.7:ENST00000345084.10:ENST00000695437.1:ENST00000695436.1:ENST00000695435.1:ENST00000695434.1:ENST00000695433.1:ENST00000695432.1:ENST00000695439.1:ENST00000461916.6:ENST00000475895.6:ENST00000482568.1:ENST00000695440.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	70	2	1.92871	1.9874100000000001	2.04611	0.016628	0.0127189	0.102621	0.0986242
chr3	160411419	160411503	1544716	0	+	0.333333	(0.32,0.35]	chr3	160691	1	SS3_PROX	SS3_PROX:INTRON	SMC4	ENSG00000113810.16	ENST00000472282.5:ENST00000472991.5:ENST00000357388.8:ENST00000469762.5:ENST00000468653.5:ENST00000467468.5:ENST00000469858.5:ENST00000489573.5:ENST00000462787.5:ENST00000344722.5:ENST00000470240.5:ENST00000497984.5:ENST00000487747.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	63	2	1.40199	1.9873100000000001	2.57263	0.0432025	0.0312297	0.162255	0.13151
chr5	32167951	32168051	2597452	0	-	0.26	[0,0.28]	chr5	246744	237	INTRON	INTRON	GOLPH3	ENSG00000113384.14	ENST00000265070.7:ENST00000503610.5:ENST00000512668.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	21	258	2	1.37644	1.987295	2.59815	0.0185816	0.00117758	0.117255	0.0313972
chr11	72064239	72064335	4976674	0	-	0.40625	(0.378,0.408]	chr11	470136	12	INTRON	INTRON	NUMA1	ENSG00000137497.19	ENST00000393695.8:ENST00000358965.10:ENST00000351960.10:ENST00000613205.4:ENST00000537217.5:ENST00000540843.5:ENST00000534987.5:ENST00000543937.5:ENST00000535087.5:ENST00000368959.9:ENST00000541719.5:ENST00000366394.7:ENST00000541641.5:ENST00000537905.5:ENST00000535111.5:ENST00000535838.5:ENST00000546131.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	40	2	1.8374	1.987215	2.13703	0.0797592	0.0299228	0.19979	0.142135
chr9	131431534	131431631	4217346	0	+	0.43299	(0.408,0.44]	chr9	386728	9	INTRON	INTRON	PRRC2B	ENSG00000288701.1	ENST00000684596.1:ENST00000683519.1:ENST00000682501.1	protein_coding	protein_coding	protein_coding	protein_coding	13	109	2	1.2759	1.98718	2.69846	0.0339398	0.00127877	0.146815	0.0326395
chr1	235312621	235312721	663707	0	-	0.4	(0.378,0.408]	chr1	78552	515	INTRON	INTRON	ARID4B	ENSG00000054267.22	ENST00000349213.7:ENST00000366603.6:ENST00000264183.9:ENST00000421364.5:ENST00000491632.5:ENST00000418304.1:ENST00000466653.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	82	2	1.86598	1.9871699999999999	2.10836	0.0300232	0.00375851	0.129138	0.0562562
chr17	42472738	42472838	6611430	0	+	0.4	(0.378,0.408]	chr17	644092	14	INTRON	INTRON	ATP6V0A1	ENSG00000033627.17	ENST00000393829.6:ENST00000343619.9:ENST00000537728.5:ENST00000588901.5:ENST00000264649.10:ENST00000585525.5:ENST00000544137.5:ENST00000589727.5:ENST00000592324.1:ENST00000587375.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	109	2	1.14593	1.98712	2.82831	0.0597023	7.49551e-4	0.189982	0.0251179
chr16	3749126	3749226	6434739	0	-	0.32	(0.28,0.32]	chr16	619452	1	SS5_PROX	SS5_PROX:INTRON	CREBBP	ENSG00000005339.15	ENST00000262367.10:ENST00000382070.7:ENST00000570939.2:ENST00000573517.6:ENST00000638158.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	65	2	1.68409	1.987035	2.28998	0.0548665	0.0166401	0.165463	0.110511
chr1	207782630	207782730	305217	0	+	0.42	(0.408,0.44]	chr1	35129	65	INTRON	INTRON	CD46	ENSG00000117335.21	ENST00000695779.1:ENST00000695777.1:ENST00000695778.1:ENST00000496723.2:ENST00000695782.1:ENST00000695781.1:ENST00000695780.1:ENST00000636114.2:ENST00000367042.6:ENST00000322875.8:ENST00000322918.9:ENST00000354848.5:ENST00000357714.5:ENST00000358170.6:ENST00000367041.5:ENST00000367047.5:ENST00000695783.1:ENST00000695784.1:ENST00000469535.5:ENST00000360212.6:ENST00000480003.5:ENST00000695786.1:ENST00000490278.2:ENST00000488596.5:ENST00000471987.1:ENST00000462968.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	78	2	1.9279	1.987005	2.04611	0.016628	0.00807087	0.102621	0.0806514
chr1	11796545	11796633	378846	0	-	0.545455	(0.515,0.57]	chr1	44469	1	SS3_PROX	SS3_PROX:INTRON	MTHFR	ENSG00000177000.13	ENST00000376590.9:ENST00000376592.6:ENST00000376583.7:ENST00000376585.6:ENST00000641747.1:ENST00000641805.1:ENST00000641446.1:ENST00000423400.7:ENST00000641407.1:ENST00000641759.1:ENST00000641721.1:ENST00000376486.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	46	2	1.86007	1.986955	2.11384	0.0526611	0.0118599	0.178401	0.0899583
chr17	30747443	30747542	6589962	0	+	0.484848	(0.476,0.515]	chr17	640860	37	INTRON	INTRON	SUZ12P1	ENSG00000264538.7	ENST00000578070.5:ENST00000579526.5:ENST00000690405.1:ENST00000497969.6:ENST00000578195.6:ENST00000582557.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	10	97	2	1.76068	1.9869050000000001	2.21313	0.0127588	0.00401502	0.0926667	0.0578059
chr3	100285901	100286001	1465822	0	+	0.33	(0.32,0.35]	chr3	153613	17	INTRON	INTRON	TBC1D23	ENSG00000036054.13	ENST00000394144.9:ENST00000485687.5:ENST00000344949.9:ENST00000486274.5:ENST00000471098.1:ENST00000475134.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	49	2	1.77704	1.98686	2.19668	0.0719969	0.021398	0.187322	0.123719
chr3	12838365	12838461	1617478	0	-	0.479167	(0.476,0.515]	chr3	167013	18	INTRON	INTRON	RPL32	ENSG00000144713.13	ENST00000429711.7:ENST00000396957.5:ENST00000273223.10:ENST00000435983.5:ENST00000396953.6:ENST00000457131.1	protein_coding	protein_coding	protein_coding	protein_coding	15	160	2	1.69758	1.9868299999999999	2.27608	0.0144542	5.15195e-4	0.105087	0.0208667
chr11	108731437	108731537	4859309	0	+	0.33	(0.32,0.35]	chr11	453501	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	DDX10	ENSG00000178105.12	ENST00000693015.1:ENST00000690021.1:ENST00000686283.1:ENST00000322536.8:ENST00000648124.1:ENST00000688583.1:ENST00000688536.1:ENST00000686617.1:ENST00000688976.1:ENST00000687072.1:ENST00000526794.1:ENST00000692839.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	49	2	1.83416	1.986805	2.13945	0.0631198	0.0254517	0.176946	0.133676
chr3	158302581	158302681	1540211	0	+	0.33	(0.32,0.35]	chr3	160305	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	RSRC1	ENSG00000174891.14	ENST00000480820.5:ENST00000295930.7:ENST00000471994.5:ENST00000683733.1:ENST00000682221.1:ENST00000683831.1:ENST00000683516.1:ENST00000482822.3:ENST00000476899.6:ENST00000464171.5:ENST00000611884.5:ENST00000682164.1:ENST00000684604.1:ENST00000683899.1:ENST00000682500.1:ENST00000684683.1:ENST00000312179.10:ENST00000475278.6:ENST00000480119.5:ENST00000471911.5:ENST00000683137.1:ENST00000477788.5:ENST00000496268.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	49	2	1.83416	1.986805	2.13945	0.0631198	0.0254517	0.176946	0.133676
chr7	152246721	152246818	3679379	0	-	0.329897	(0.32,0.35]	chr7	341574	28	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000681033.1:ENST00000679645.1:ENST00000684550.1:ENST00000489110.2:ENST00000683490.1:ENST00000683616.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	49	2	1.83416	1.986805	2.13945	0.0631198	0.0254517	0.176946	0.133676
chr7	111273196	111273296	3621214	0	-	0.45	(0.44,0.476]	chr7	337093	3093	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	71	2	1.28061	1.98679	2.69297	0.0639824	0.00333494	0.177882	0.0528877
chr5	65935698	65935798	2370935	0	+	0.45	(0.44,0.476]	chr5	228472	85	INTRON	INTRON	ERBIN	ENSG00000112851.15	ENST00000380943.6:ENST00000507490.1:ENST00000416865.6:ENST00000380935.5:ENST00000284037.10:ENST00000380938.6:ENST00000511297.5:ENST00000506030.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	22	213	2	1.4678	1.98664	2.50548	0.0150988	6.01762e-5	0.0994339	0.00639338
chr21	22238410	22238510	7384752	0	+	0.4	(0.378,0.408]	chr21	752727	252	INTRON	INTRON	ENSG00000226043	ENSG00000226043.2	ENST00000667099.1:ENST00000654607.1:ENST00000444130.1	lncRNA	lncRNA	lncRNA	lncRNA	6	64	2	1.94559	1.986605	2.02762	0.0211434	0.0181059	0.122929	0.107247
chr6	166944103	166944201	3264190	0	-	0.367347	(0.35,0.378]	chr6	303028	4	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	ENSG00000249141:RNASET2	ENSG00000249141.1:ENSG00000026297.17	ENST00000507747.1:ENST00000508775.6:ENST00000683770.1:ENST00000611959.2:ENST00000620173.5:ENST00000682774.1:ENST00000684236.1:ENST00000683968.1:ENST00000682498.1:ENST00000366855.10:ENST00000421787.5:ENST00000476238.6:ENST00000028008.9:ENST00000478180.6:ENST00000499370.6:ENST00000358165.7:ENST00000496851.6:ENST00000684086.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	97	2	1.97729	1.986515	1.99574	0.012218	0.00688871	0.0910127	0.0750118
chr7	75478950	75479049	3558859	0	-	0.30303	(0.28,0.32]	chr7	331555	34	INTRON	INTRON	POM121C:ENSG00000242073	ENSG00000272391.6:ENSG00000242073.2	ENST00000615331.5:ENST00000398379.2:ENST00000415277.2	protein_coding	protein_coding	protein_coding:transcribed_unprocessed_pseudogene	protein_coding:transcribed_unprocessed_pseudogene	5	56	2	1.64429	1.9865	2.32871	0.0581621	0.0365539	0.167723	0.153932
chr17	59737743	59737843	6642698	0	+	0.44	(0.408,0.44]	chr17	648731	2	SS5_PROX	SS5_PROX:INTRON	VMP1	ENSG00000062716.13	ENST00000593168.5:ENST00000586245.5:ENST00000585847.5:ENST00000262291.9:ENST00000587945.1:ENST00000589823.6:ENST00000591315.5:ENST00000592619.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	38	2	1.69566	1.98632	2.27698	0.0583528	0.0453922	0.167723	0.164236
chr7	64679736	64679836	3320011	0	+	0.39	(0.378,0.408]	chr7	308658	4	SS5_PROX	SS5_PROX:INTRON	ZNF107	ENSG00000196247.13	ENST00000395391.2:ENST00000684016.1:ENST00000620827.6:ENST00000423627.6:ENST00000613690.5:ENST00000683053.1:ENST00000360117.8:ENST00000344930.7:ENST00000684494.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	86	2	1.97577	1.986275	1.99678	0.0177959	0.00823929	0.113452	0.0773252
chr21	37236293	37236391	7462065	0	-	0.387755	(0.378,0.408]	chr21	760235	25	INTRON	INTRON	VPS26C	ENSG00000157538.14	ENST00000399000.7:ENST00000309117.11:ENST00000399001.5:ENST00000476950.5:ENST00000488368.5:ENST00000398998.1:ENST00000480452.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	60	2	1.66594	1.98611	2.30628	0.0320222	0.0163339	0.144995	0.101571
chr8	37880012	37880112	3935750	0	-	0.39	(0.378,0.408]	chr8	360576	20	INTRON	INTRON	RAB11FIP1	ENSG00000156675.16	ENST00000330843.9:ENST00000287263.8:ENST00000522727.5	protein_coding	protein_coding	protein_coding	protein_coding	6	60	2	1.66594	1.98611	2.30628	0.0320222	0.0163339	0.144995	0.101571
chr9	37185711	37185811	4118312	0	+	0.4	(0.378,0.408]	chr9	375384	256	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000322831.6:ENST00000461038.5:ENST00000488607.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	60	2	1.66594	1.98611	2.30628	0.0320222	0.0163339	0.144995	0.101571
chr3	47689086	47689186	1684135	0	-	0.53	(0.515,0.57]	chr3	172047	3	SS5_PROX	SS5_PROX:INTRON	SMARCC1	ENSG00000173473.11	ENST00000254480.10:ENST00000425518.5:ENST00000462198.5:ENST00000485737.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	15	117	2	1.70083	1.9860600000000002	2.27129	0.00520656	0.00178129	0.0655877	0.0379201
chr4	39709869	39709969	1953109	0	+	0.42	(0.408,0.44]	chr4	195630	111	INTRON	INTRON	UBE2K	ENSG00000078140.14	ENST00000510934.5:ENST00000261427.10:ENST00000438068.6:ENST00000513231.5:ENST00000503368.5:ENST00000445950.2:ENST00000510719.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	71	2	1.61024	1.9860449999999998	2.36185	0.0200746	0.0133164	0.121073	0.094512
chr3	33404002	33404101	1651338	0	-	0.575758	(0.57,1]	chr3	169355	7	INTRON	INTRON	UBP1	ENSG00000153560.12	ENST00000283629.8:ENST00000447368.6:ENST00000283628.9:ENST00000486388.5:ENST00000411650.5:ENST00000467613.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	40	2	1.80424	1.986015	2.16779	0.0129439	0.00900694	0.0991015	0.0803518
chr4	126465741	126465841	2235366	0	-	0.38	(0.378,0.408]	chr4	219023	2	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	8	73	2	1.53546	1.986015	2.43657	0.0265688	0.0106733	0.134088	0.0861859
chr1	108884289	108884386	178987	0	+	0.42268	(0.408,0.44]	chr1	19493	13	INTRON	INTRON	GPSM2	ENSG00000121957.15	ENST00000406462.6:ENST00000675829.1:ENST00000441735.2:ENST00000642355.1:ENST00000435987.5:ENST00000645164.2:ENST00000675776.1:ENST00000264126.9:ENST00000676404.1:ENST00000674731.1:ENST00000674914.1:ENST00000674700.1:ENST00000643094.1:ENST00000675086.1:ENST00000676184.1:ENST00000675087.1:ENST00000675617.1:ENST00000435475.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	59	2	1.96973	1.986005	2.00228	0.0389732	0.0108773	0.143072	0.0923273
chr11	66617736	66617822	4810806	0	+	0.453488	(0.44,0.476]	chr11	447844	2	SS5_PROX	SS5_PROX:INTRON	RBM14-RBM4:RBM14	ENSG00000248643.5:ENSG00000239306.5	ENST00000412278.2:ENST00000393979.3:ENST00000511114.1:ENST00000310137.5:ENST00000409372.1:ENST00000421355.1:ENST00000443702.1:ENST00000500635.2:ENST00000409738.4:ENST00000460762.1:ENST00000461478.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	24	230	2	1.79377	1.9859900000000001	2.17821	0.00359468	2.98252e-4	0.0533855	0.0154902
chr1	204551369	204551468	297782	0	+	0.414141	(0.408,0.44]	chr1	34331	18	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	MDM4	ENSG00000198625.14	ENST00000367183.7:ENST00000391947.6:ENST00000454264.6:ENST00000612738.4:ENST00000614459.4:ENST00000616250.4:ENST00000367182.8:ENST00000463049.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	23	221	2	1.58693	1.98596	2.38499	0.00577289	3.09284e-4	0.0684199	0.0161935
chr1	21772866	21772966	396767	0	-	0.38	(0.378,0.408]	chr1	47345	147	INTRON	INTRON	USP48	ENSG00000090686.16	ENST00000400301.5:ENST00000308271.14:ENST00000529637.5:ENST00000421625.6:ENST00000527823.5:ENST00000532737.1:ENST00000489108.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	74	2	1.68393	1.9859299999999998	2.28793	0.0503034	0.00291235	0.156383	0.0494641
chr12	46249113	46249213	5316327	0	-	0.41	(0.408,0.44]	chr12	505743	54	INTRON	INTRON	SLC38A1	ENSG00000111371.16	ENST00000398637.10:ENST00000439706.5:ENST00000549049.5:ENST00000546893.5:ENST00000552197.5:ENST00000549633.5:ENST00000551506.1:ENST00000550173.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	70	2	1.92319	1.985805	2.04842	0.0247322	0.00797555	0.12011	0.0798772
chr7	152380361	152380460	3680737	0	-	0.464646	(0.44,0.476]	chr7	341660	213	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000682301.1:ENST00000452749.2:ENST00000680867.1:ENST00000683800.1:ENST00000684278.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	97	2	1.5849	1.98563	2.38636	0.0139378	0.0047296	0.10247	0.0600445
chr4	176325042	176325137	2083146	0	+	0.421053	(0.408,0.44]	chr4	205884	4	INTRON	INTRON	SPCS3	ENSG00000129128.13	ENST00000503362.2:ENST00000507678.5:ENST00000513139.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	89	2	1.97721	1.98559	1.99397	0.0121661	0.00610802	0.0910127	0.0706941
chr1	32046189	32046289	62977	0	+	0.42	(0.408,0.44]	chr1	7991	4	INTRON	INTRON	KHDRBS1	ENSG00000121774.18	ENST00000484270.2	protein_coding	processed_transcript	protein_coding	processed_transcript	10	100	2	1.96132	1.985525	2.00973	0.00701866	0.0069268	0.0754576	0.0718189
chr17	78199236	78199335	6682069	0	+	0.50505	(0.476,0.515]	chr17	652703	18	INTRON	INTRON	AFMID	ENSG00000183077.16	ENST00000591256.5:ENST00000409257.10:ENST00000327898.9:ENST00000591952.5:ENST00000588800.5:ENST00000588199.5:ENST00000589107.5:ENST00000592988.5:ENST00000586542.5:ENST00000591538.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	69	2	1.95469	1.9854349999999998	2.01618	0.0180082	0.0115753	0.106756	0.0962115
chr1	229556154	229556252	653748	0	-	0.5	(0.476,0.515]	chr1	77488	64	INTRON	INTRON	ABCB10	ENSG00000135776.5	ENST00000344517.5	protein_coding	protein_coding	protein_coding	protein_coding	7	69	2	1.91368	1.98541	2.05714	0.0156961	0.0135123	0.101453	0.101363
chr3	9999221	9999321	1362094	0	+	0.41	(0.408,0.44]	chr3	143402	50	INTRON	INTRON	EMC3-AS1	ENSG00000180385.9	ENST00000692142.1:ENST00000366264.6:ENST00000693066.1:ENST00000326237.3:ENST00000440568.1:ENST00000424904.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	25	248	2	1.95751	1.985395	2.01328	0.00129824	9.57416e-4	0.0333764	0.0282401
chr17	62040786	62040886	6810635	0	-	0.32	(0.28,0.32]	chr17	672946	48	INTRON	INTRON	MED13	ENSG00000108510.10	ENST00000397786.7	protein_coding	protein_coding	protein_coding	protein_coding	21	255	2	1.97375	1.985325	1.9969	0.00482624	0.00114276	0.0603558	0.0311066
chr6	24712152	24712250	3070654	0	-	0.459184	(0.44,0.476]	chr6	285352	29	INTRON	INTRON	C6orf62	ENSG00000112308.13	ENST00000378119.9:ENST00000378102.3	protein_coding	protein_coding	protein_coding	protein_coding	21	196	2	1.81159	1.985175	2.15876	0.00206992	0.00128332	0.0422205	0.0327461
chr20	44907634	44907734	7277921	0	+	0.34	(0.32,0.35]	chr20	739911	13	UTR3	UTR3:EXON_MRNA	YWHAB	ENSG00000166913.13	ENST00000353703.9:ENST00000372839.7	protein_coding	protein_coding	protein_coding	protein_coding	5	61	2	1.8903	1.9850750000000001	2.07985	0.0303092	0.0298043	0.143025	0.129138
chr16	89485042	89485142	6543547	0	-	0.47	(0.44,0.476]	chr16	634281	534	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	12	116	2	1.7131	1.98507	2.25704	0.0120779	0.0018274	0.0907145	0.0396683
chr2	131213255	131213353	865491	0	+	0.326531	(0.32,0.35]	chr2	97182	17	INTRON	INTRON	PLEKHB2:POTEE	ENSG00000115762.17:ENSG00000188219.16	ENST00000404460.5:ENST00000683005.1	protein_coding	protein_coding	protein_coding	protein_coding	8	94	2	1.94669	1.9849800000000002	2.02327	0.0154073	0.00956045	0.100659	0.0863913
chr17	51187797	51187897	6797126	0	-	0.4	(0.378,0.408]	chr17	671037	15	INTRON	INTRON	MBTD1	ENSG00000011258.16	ENST00000586178.6:ENST00000415868.5	protein_coding	protein_coding	protein_coding	protein_coding	5	53	2	1.73164	1.984975	2.23831	0.0441773	0.0179575	0.149888	0.114265
chr20	32156914	32157009	7254796	0	+	0.389474	(0.378,0.408]	chr20	736910	14	INTRON	INTRON	TM9SF4	ENSG00000101337.16	ENST00000398022.7:ENST00000217315.9	protein_coding	protein_coding	protein_coding	protein_coding	5	53	2	1.73164	1.984975	2.23831	0.0441773	0.0179575	0.149888	0.114265
chr17	30734062	30734159	6589826	0	+	0.309278	(0.28,0.32]	chr17	640847	1	EXON_LNCRNA	EXON_LNCRNA:INTRON	SUZ12P1	ENSG00000264538.7	ENST00000578070.5:ENST00000579526.5:ENST00000690405.1:ENST00000497969.6:ENST00000578195.6:ENST00000582557.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	12	149	2	1.97163	1.9849350000000001	1.99824	0.0105487	0.00363848	0.0860903	0.0556314
chr18	1356341	1356440	6941744	0	-	0.464646	(0.44,0.476]	chr18	686589	25	INTRON	INTRON	LINC00470	ENSG00000132204.14	ENST00000657423.1:ENST00000657618.1:ENST00000584090.5:ENST00000660947.1:ENST00000669242.1:ENST00000660475.1:ENST00000653775.1:ENST00000661931.1:ENST00000412816.7:ENST00000577867.5:ENST00000584492.5:ENST00000667416.1:ENST00000661852.1:ENST00000657919.1:ENST00000661646.1:ENST00000667776.1:ENST00000654559.1:ENST00000661233.1:ENST00000653213.1:ENST00000659094.1:ENST00000660964.1:ENST00000577403.6:ENST00000660358.1:ENST00000669153.1:ENST00000657121.1:ENST00000655957.1:ENST00000659289.1:ENST00000665133.1:ENST00000671558.1:ENST00000666542.1:ENST00000663512.1:ENST00000582862.6:ENST00000578835.5:ENST00000669312.1:ENST00000581430.5:ENST00000581212.1:ENST00000658090.1:ENST00000667225.1	lncRNA	lncRNA	lncRNA	lncRNA	7	71	2	1.93713	1.9848949999999999	2.03266	0.0155853	0.0138947	0.109411	0.0955491
chr3	152327318	152327418	1535572	0	+	0.4	(0.378,0.408]	chr3	159996	250	INTRON	INTRON	MBNL1	ENSG00000152601.18	ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000495875.6:ENST00000324210.10:ENST00000493459.5:ENST00000459747.1:ENST00000460591.5:ENST00000545754.5:ENST00000357472.7:ENST00000324196.9:ENST00000498502.5:ENST00000463374.5:ENST00000485910.5:ENST00000465907.6:ENST00000492948.5:ENST00000485509.5:ENST00000464596.5	protein_coding	protein_coding	protein_coding	protein_coding	34	334	2	1.9251	1.984885	2.04467	0.00165361	2.54321e-4	0.0369207	0.0142062
chr1	167917352	167917449	577050	0	-	0.505155	(0.476,0.515]	chr1	69969	8	UTR3	UTR3:EXON_MRNA	MPC2	ENSG00000143158.11	ENST00000271373.9:ENST00000367846.8	protein_coding	protein_coding	protein_coding	protein_coding	4	42	2	1.91817	1.984855	2.05154	0.0459211	0.0336015	0.164984	0.134145
chr10	72713279	72713374	4450299	0	+	0.494737	(0.476,0.515]	chr10	410738	5	INTRON	INTRON	MCU	ENSG00000156026.15	ENST00000373053.8:ENST00000357157.10:ENST00000604679.5:ENST00000604372.5:ENST00000603649.5:ENST00000605597.5:ENST00000536019.5:ENST00000604152.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	42	2	1.91817	1.984855	2.05154	0.0459211	0.0336015	0.164984	0.134145
chr10	80506130	80506224	4476755	0	+	0.5	(0.476,0.515]	chr10	412088	10	INTRON	INTRON	TSPAN14	ENSG00000108219.15	ENST00000429989.7:ENST00000481124.5:ENST00000372158.6:ENST00000372157.6:ENST00000469149.1:ENST00000372164.7:ENST00000341863.10:ENST00000372156.5:ENST00000616406.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	42	2	1.91817	1.984855	2.05154	0.0459211	0.0336015	0.164984	0.134145
chr18	47137937	47138036	6967092	0	-	0.50505	(0.476,0.515]	chr18	689609	2	INTRON	INTRON	HDHD2:ENSG00000267228	ENSG00000167220.12:ENSG00000267228.7	ENST00000588183.5:ENST00000300605.11:ENST00000602459.6:ENST00000587841.5:ENST00000590815.5:ENST00000591480.5:ENST00000586546.5:ENST00000590481.5:ENST00000588940.5:ENST00000587388.5:ENST00000591268.1:ENST00000592591.1:ENST00000591671.1:ENST00000588705.1:ENST00000602926.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	42	2	1.91817	1.984855	2.05154	0.0459211	0.0336015	0.164984	0.134145
chr6	75277698	75277798	3140516	0	-	0.5	(0.476,0.515]	chr6	292687	49	INTRON	INTRON	TMEM30A	ENSG00000112697.17	ENST00000230461.11:ENST00000673730.1:ENST00000674104.1:ENST00000673989.1:ENST00000674151.1:ENST00000475111.6:ENST00000674038.1:ENST00000518161.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	42	2	1.91817	1.984855	2.05154	0.0459211	0.0336015	0.164984	0.134145
chr1	95147018	95147117	166866	0	+	0.323232	(0.32,0.35]	chr1	18114	26	INTRON	INTRON	TLCD4:TLCD4-RWDD3	ENSG00000152078.10:ENSG00000271092.5	ENST00000370203.9:ENST00000456991.5:ENST00000604534.5:ENST00000455656.1:ENST00000463375.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	99	2	1.71888	1.984785	2.25069	0.014315	0.00934678	0.104106	0.0817766
chr11	64776316	64776406	4965285	0	-	0.377778	(0.35,0.378]	chr11	467540	4	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	SF1	ENSG00000168066.21	ENST00000334944.9:ENST00000227503.13:ENST00000377394.7:ENST00000448404.5:ENST00000377390.8:ENST00000377387.5:ENST00000681407.1:ENST00000433274.6:ENST00000633899.1:ENST00000413951.5:ENST00000432725.1:ENST00000482693.1:ENST00000463343.1:ENST00000472725.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	31	318	2	1.57536	1.9847299999999999	2.3941	0.0065908	9.26498e-5	0.0702466	0.00805822
chr21	39207356	39207454	7464439	0	-	0.438776	(0.408,0.44]	chr21	760385	7	INTRON	INTRON	BRWD1	ENSG00000185658.14	ENST00000333229.6:ENST00000342449.8:ENST00000446924.5:ENST00000380800.7:ENST00000424441.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	80	2	1.81017	1.9845549999999998	2.15894	0.0217525	0.00504142	0.11491	0.0646039
chr16	89813050	89813146	6544793	0	-	0.375	(0.35,0.378]	chr16	634616	16	INTRON	INTRON	FANCA	ENSG00000187741.16	ENST00000561667.2:ENST00000389301.8:ENST00000568369.6:ENST00000564475.6:ENST00000696275.1:ENST00000696287.1:ENST00000696286.1:ENST00000696291.1:ENST00000696276.1:ENST00000567205.2:ENST00000567284.7:ENST00000696277.1:ENST00000696292.1:ENST00000563767.2:ENST00000567621.6:ENST00000696288.1:ENST00000696293.1:ENST00000566889.5:ENST00000389302.7:ENST00000696294.1:ENST00000696295.1:ENST00000563673.5:ENST00000543736.5:ENST00000534992.5:ENST00000565582.5:ENST00000696296.1:ENST00000563513.1:ENST00000567883.5:ENST00000567943.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	58	2	1.9755	1.984505	1.99351	0.0398617	0.020841	0.161534	0.111648
chr2	44446280	44446380	766183	0	+	0.33	(0.32,0.35]	chr2	86775	453	INTRON	INTRON	CAMKMT	ENSG00000143919.15	ENST00000378494.8:ENST00000402247.5:ENST00000407131.5:ENST00000403853.7:ENST00000428993.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	49	2	1.88909	1.98447	2.07985	0.0553737	0.0303092	0.165463	0.143025
chr7	87892710	87892809	3346842	0	+	0.323232	(0.32,0.35]	chr7	311868	43	INTRON	INTRON	DBF4	ENSG00000006634.8	ENST00000413643.5:ENST00000265728.6:ENST00000431138.5:ENST00000430279.5:ENST00000498144.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	49	2	1.88909	1.98447	2.07985	0.0553737	0.0303092	0.165463	0.143025
chr1	16350357	16350456	382599	0	-	0.313131	(0.28,0.32]	chr1	44888	346	INTRON	INTRON	FBXO42	ENSG00000037637.11	ENST00000375592.8	protein_coding	protein_coding	protein_coding	protein_coding	6	78	2	1.76293	1.984365	2.2058	0.0766478	0.00496409	0.196164	0.0646039
chr11	86039199	86039298	5014544	0	-	0.393939	(0.378,0.408]	chr11	473022	72	INTRON	INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000630913.2:ENST00000528398.5:ENST00000356360.9:ENST00000534412.5:ENST00000531558.1:ENST00000531930.5:ENST00000532041.5:ENST00000525162.5:ENST00000528256.1:ENST00000528411.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	22	212	2	1.96984	1.98433	1.99882	0.00444276	5.74367e-4	0.0591386	0.0217621
chr7	101824075	101824175	3366429	0	+	0.49	(0.476,0.515]	chr7	315215	47	INTRON	INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000497815.5:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000607092.1:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000558469.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	69	2	1.97402	1.984295	1.99457	0.0206778	0.009924	0.110999	0.0877296
chr7	128573319	128573419	3407777	0	+	0.39	(0.378,0.408]	chr7	318333	392	INTRON	INTRON	ENSG00000280828	ENSG00000280828.1	ENST00000479267.2	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	6	50	2	1.36527	1.984115	2.60296	0.0587392	0.0267851	0.189982	0.123349
chr9	37143132	37143232	4117884	0	+	0.36	(0.35,0.378]	chr9	375372	158	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000322831.6:ENST00000461038.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	19	194	2	1.82708	1.984115	2.14115	0.00244071	0.00223585	0.0456956	0.0423004
chr3	9394785	9394885	1611694	0	-	0.43	(0.408,0.44]	chr3	166266	9	EXON_LNCRNA	EXON_LNCRNA:INTRON	THUMPD3-AS1	ENSG00000206573.10	ENST00000468186.5:ENST00000661342.1:ENST00000519043.5:ENST00000657509.1:ENST00000685076.1:ENST00000687342.1:ENST00000685952.1:ENST00000521609.5:ENST00000520629.5:ENST00000654392.1:ENST00000522525.6:ENST00000664441.2:ENST00000469846.3:ENST00000481221.7:ENST00000661714.1:ENST00000665983.1:ENST00000660363.1:ENST00000667458.1:ENST00000520447.1:ENST00000524210.2:ENST00000664273.1:ENST00000521267.5:ENST00000467069.6:ENST00000520396.1:ENST00000494680.6:ENST00000518437.3:ENST00000689821.1:ENST00000522221.2:ENST00000489616.1:ENST00000521708.1:ENST00000480904.2:ENST00000498199.1	lncRNA	lncRNA	lncRNA	lncRNA	8	80	2	1.84516	1.984095	2.12303	0.0193431	0.00586883	0.108861	0.0690758
chr16	69585234	69585334	6380202	0	+	0.53	(0.515,0.57]	chr16	613167	163	INTRON	INTRON	NFAT5	ENSG00000102908.22	ENST00000426654.6:ENST00000349945.7:ENST00000354436.6:ENST00000627621.3:ENST00000650987.1:ENST00000567990.5:ENST00000567239.5:ENST00000393742.7:ENST00000565301.2:ENST00000566899.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	43	2	1.88259	1.98403	2.08547	0.0289426	0.0251849	0.133519	0.1274
chr10	102292457	102292557	4513118	0	+	0.45	(0.44,0.476]	chr10	415716	70	INTRON	INTRON	GBF1	ENSG00000107862.7	ENST00000676513.1:ENST00000676939.1:ENST00000677439.1:ENST00000677240.1:ENST00000677618.1:ENST00000679155.1:ENST00000679280.1:ENST00000678036.1:ENST00000678476.1:ENST00000678504.1:ENST00000677247.1:ENST00000677655.1:ENST00000678351.1:ENST00000679238.1:ENST00000677487.1:ENST00000677506.1:ENST00000678666.1:ENST00000676560.1:ENST00000673650.1:ENST00000674034.1:ENST00000369983.5:ENST00000679003.1:ENST00000678486.1:ENST00000676682.1:ENST00000676807.1:ENST00000676993.1:ENST00000678575.1:ENST00000677522.1:ENST00000678293.1:ENST00000679087.1:ENST00000677683.1:ENST00000676861.1:ENST00000677491.1:ENST00000677461.1:ENST00000677871.1:ENST00000677431.1:ENST00000677852.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	51	2	1.62896	1.983975	2.33899	0.0546679	0.0142027	0.182674	0.0959987
chr2	55034318	55034418	1121248	0	-	0.51	(0.476,0.515]	chr2	120163	57	INTRON	INTRON	RTN4	ENSG00000115310.19	ENST00000404909.5:ENST00000394611.6:ENST00000317610.11:ENST00000357732.8:ENST00000337526.11:ENST00000357376.7:ENST00000405240.5:ENST00000438462.1:ENST00000427710.5	protein_coding	protein_coding	protein_coding	protein_coding	20	183	2	1.94728	1.9839349999999998	2.02059	0.00439797	8.60474e-4	0.0586103	0.0266163
chr12	116160503	116160603	5424374	0	-	0.4	(0.378,0.408]	chr12	518263	486	INTRON	INTRON	MED13L	ENSG00000123066.9	ENST00000281928.9:ENST00000650226.1:ENST00000548743.2:ENST00000647567.1:ENST00000551197.2	protein_coding	protein_coding	protein_coding	protein_coding	6	60	2	1.80483	1.98393	2.16303	0.0252473	0.0201276	0.121243	0.12011
chr21	45105048	45105148	7418157	0	+	0.4	(0.378,0.408]	chr21	756262	299	INTRON	INTRON	ADARB1	ENSG00000197381.17	ENST00000462214.5:ENST00000460734.5:ENST00000348831.9:ENST00000389861.7:ENST00000389863.8:ENST00000492414.5:ENST00000496664.5:ENST00000437626.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	39	2	1.65821	1.98391	2.30961	0.055088	0.0506302	0.17547	0.165463
chr7	140346470	140346567	3660750	0	-	0.402062	(0.378,0.408]	chr7	339802	1	INTRON	INTRON	SLC37A3	ENSG00000157800.18	ENST00000477571.5:ENST00000326232.14:ENST00000447932.6:ENST00000340308.7:ENST00000491357.5:ENST00000492027.5:ENST00000460560.5:ENST00000485734.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	39	2	1.65821	1.98391	2.30961	0.055088	0.0506302	0.17547	0.165463
chr4	1247169	1247268	2094991	0	-	0.585859	(0.57,1]	chr4	207174	53	INTRON	INTRON	CTBP1	ENSG00000159692.16	ENST00000382952.8:ENST00000290921.10:ENST00000506180.5:ENST00000514210.5:ENST00000514495.1:ENST00000515399.5:ENST00000513420.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	47	2	1.26112	1.983895	2.70667	0.0533929	7.21202e-4	0.162935	0.0245208
chr4	55398637	55398732	1960615	0	+	0.473684	(0.44,0.476]	chr4	196542	14	INTRON	INTRON	TMEM165	ENSG00000134851.13	ENST00000381334.10:ENST00000506198.5:ENST00000508404.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	19	151	2	1.12832	1.983865	2.83941	0.0386093	2.54236e-4	0.159704	0.0147895
chr12	53174270	53174368	5327508	0	-	0.346939	(0.32,0.35]	chr12	508232	1	INTRON	INTRON	CSAD	ENSG00000139631.20	ENST00000444623.6:ENST00000267085.8:ENST00000379850.7:ENST00000379846.5:ENST00000453446.6:ENST00000437073.5:ENST00000424990.5	protein_coding	protein_coding	protein_coding	protein_coding	9	104	2	1.64095	1.9838649999999998	2.32678	0.0295558	0.00272092	0.128413	0.0481508
chr3	177196239	177196339	1872439	0	-	0.45	(0.44,0.476]	chr3	187448	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	TBL1XR1	ENSG00000177565.18	ENST00000457928.7:ENST00000430069.5:ENST00000673974.1:ENST00000352800.10:ENST00000422442.6:ENST00000428970.5:ENST00000424913.5:ENST00000437738.5:ENST00000431421.5:ENST00000635794.1:ENST00000630796.2:ENST00000450267.5:ENST00000630833.2:ENST00000431674.5:ENST00000422066.5:ENST00000443315.5:ENST00000627825.2:ENST00000427349.5:ENST00000413084.5:ENST00000491623.2:ENST00000637544.1:ENST00000636187.1:ENST00000637123.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	58	2	1.88483	1.9838	2.08277	0.0309998	0.0149825	0.13151	0.107704
chr6	26278477	26278577	3071071	0	-	0.26	[0,0.28]	chr6	285463	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	H4C8	ENSG00000158406.6	ENST00000634956.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	13	175	2	1.46932	1.983775	2.49823	0.023847899999999998	0.00283641	0.129075	0.0473151
chr6	147280302	147280402	2989473	0	+	0.4	(0.378,0.408]	chr6	280037	17	INTRON	INTRON	STXBP5	ENSG00000164506.15	ENST00000321680.11:ENST00000367481.7:ENST00000546097.5:ENST00000367480.7	protein_coding	protein_coding	protein_coding	protein_coding	13	132	2	1.81931	1.9837600000000002	2.14821	0.00835783	0.00200048	0.0774402	0.0412555
chr16	70670221	70670320	6512028	0	-	0.424242	(0.408,0.44]	chr16	630830	43	INTRON	INTRON	MTSS2	ENSG00000132613.16	ENST00000338779.11	protein_coding	protein_coding	protein_coding	protein_coding	4	43	2	1.85305	1.98376	2.11447	0.0543543	0.0285207	0.182243	0.12666
chr9	124406425	124406523	4346567	0	-	0.438776	(0.408,0.44]	chr9	399181	6	INTRON	INTRON	PSMB7	ENSG00000136930.13	ENST00000259457.8:ENST00000498485.5:ENST00000441097.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	43	2	1.85305	1.98376	2.11447	0.0543543	0.0285207	0.182243	0.12666
chr3	160436783	160436882	1849736	0	-	0.252525	[0,0.28]	chr3	186017	10	UTR3	UTR3:EXON_MRNA:INTRON	ENSG00000248710:TRIM59	ENSG00000248710.1:ENSG00000213186.8	ENST00000483754.1:ENST00000543469.1:ENST00000309784.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	13	160	2	1.444	1.98373	2.52346	0.0231577	0.00478297	0.127017	0.0602209
chr6	17665038	17665138	3065786	0	-	0.3	(0.28,0.32]	chr6	284835	4	SS5_PROX	SS5_PROX:INTRON	NUP153	ENSG00000124789.12	ENST00000613258.4:ENST00000537253.5:ENST00000262077.3	protein_coding	protein_coding	protein_coding	protein_coding	24	298	2	1.5092	1.98372	2.45824	0.0161662	1.2097e-4	0.101453	0.00940227
chr2	182994638	182994738	1285583	0	-	0.32	(0.28,0.32]	chr2	135395	4	SS5_PROX	SS5_PROX:INTRON	NCKAP1	ENSG00000061676.15	ENST00000361354.9:ENST00000360982.2	protein_coding	protein_coding	protein_coding	protein_coding	8	99	2	1.84658	1.9836550000000002	2.12073	0.0157269	0.0128582	0.101453	0.0990564
chr1	25457031	25457131	48212	0	+	0.14	[0,0.28]	chr1	5942	2	SS5_PROX	SS5_PROX:INTRON	MACO1	ENSG00000204178.11	ENST00000399766.7:ENST00000374343.5:ENST00000647928.1:ENST00000470035.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	70	2	1.37159	1.9835349999999998	2.59548	0.0634918	0.0346067	0.198135	0.136649
chr1	110344445	110344544	182395	0	+	0.383838	(0.378,0.408]	chr1	20236	18	INTRON	INTRON	RBM15	ENSG00000162775.17	ENST00000652747.1:ENST00000618772.4:ENST00000487146.8:ENST00000369784.9:ENST00000650953.2:ENST00000654015.1:ENST00000617047.1	protein_coding	protein_coding	protein_coding	protein_coding	18	164	2	1.33242	1.98352	2.63462	0.0203616	4.21248e-4	0.121778	0.0189827
chr1	167975914	167976014	248885	0	+	0.27	[0,0.28]	chr1	29564	5	INTRON	INTRON	DCAF6	ENSG00000143164.16	ENST00000450548.5:ENST00000470919.5:ENST00000432587.6:ENST00000367843.7:ENST00000470721.5:ENST00000367840.4:ENST00000312263.10:ENST00000455334.5:ENST00000491067.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	71	2	1.47169	1.9834800000000001	2.49527	0.0479607	0.0436497	0.171039	0.14882
chr10	96139869	96139968	4502295	0	+	0.525253	(0.515,0.57]	chr10	414481	42	INTRON	INTRON	ZNF518A	ENSG00000177853.15	ENST00000614149.2:ENST00000488700.5:ENST00000624776.4:ENST00000539666.5:ENST00000563195.1:ENST00000316045.10	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	36	2	1.94945	1.9834100000000001	2.01737	0.0414068	0.0352218	0.161557	0.137535
chr17	22136772	22136872	6579031	0	+	0.52	(0.515,0.57]	chr17	639556	455	INTRON	INTRON	UBBP4	ENSG00000263563.7	ENST00000648259.1:ENST00000688301.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	4	36	2	1.94945	1.9834100000000001	2.01737	0.0414068	0.0352218	0.161557	0.137535
chr3	87832419	87832519	1455409	0	+	0.55	(0.515,0.57]	chr3	153149	99	INTRON	INTRON	HTR1F	ENSG00000179097.7	ENST00000319595.7	protein_coding	protein_coding	protein_coding	protein_coding	4	36	2	1.94945	1.9834100000000001	2.01737	0.0414068	0.0352218	0.161557	0.137535
chr7	43643158	43643258	3525504	0	-	0.57	(0.515,0.57]	chr7	328735	11	INTRON	INTRON	COA1	ENSG00000106603.20	ENST00000415076.6:ENST00000446330.6:ENST00000446564.5:ENST00000438444.5:ENST00000490251.1:ENST00000223336.11:ENST00000310564.10:ENST00000395879.5:ENST00000415798.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	36	2	1.94945	1.9834100000000001	2.01737	0.0414068	0.0352218	0.161557	0.137535
chr16	29686487	29686587	6335454	0	+	0.51	(0.476,0.515]	chr16	606813	69	INTRON	INTRON	QPRT	ENSG00000103485.19	ENST00000449759.2:ENST00000219771.7:ENST00000395384.9:ENST00000562473.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	50	2	1.91525	1.983395	2.05154	0.0336015	0.0232571	0.134145	0.127416
chr17	29401638	29401737	6585748	0	+	0.434343	(0.408,0.44]	chr17	640373	103	INTRON	INTRON	ENSG00000266111:TAOK1	ENSG00000266111.2:ENSG00000160551.12	ENST00000584958.2:ENST00000261716.8:ENST00000583121.5:ENST00000587277.1:ENST00000536202.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	6	61	2	1.78881	1.9833250000000002	2.17784	0.0370259	0.00916282	0.139194	0.0855292
chr5	146142256	146142356	2746983	0	-	0.27	[0,0.28]	chr5	258805	21	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	LARS1	ENSG00000133706.19	ENST00000674174.1:ENST00000674170.1:ENST00000674479.1:ENST00000674309.1:ENST00000674218.1:ENST00000674467.1:ENST00000674290.1:ENST00000674447.1:ENST00000674270.1:ENST00000674383.1:ENST00000674191.1:ENST00000674158.1:ENST00000506231.6:ENST00000674471.1:ENST00000674181.1:ENST00000394434.7:ENST00000674398.1:ENST00000674277.1:ENST00000274562.13:ENST00000510191.5:ENST00000504323.6:ENST00000674310.1:ENST00000512412.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	25	334	2	1.57216	1.98332	2.39448	0.0078152	0.00112415	0.0788425	0.0306963
chr2	32004087	32004187	1091052	0	-	0.51	(0.476,0.515]	chr2	116913	409	INTRON	INTRON	MEMO1:DPY30	ENSG00000162959.14:ENSG00000162961.14	ENST00000295065.9:ENST00000446765.5:ENST00000404530.6:ENST00000490459.5:ENST00000426310.6:ENST00000413686.1:ENST00000407893.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	50	2	1.80284	1.983305	2.16377	0.033161	0.0243026	0.145899	0.12011
chr11	66123165	66123265	4808400	0	+	0.44	(0.408,0.44]	chr11	447345	17	INTRON	INTRON	PACS1	ENSG00000175115.13	ENST00000320580.9:ENST00000527224.1:ENST00000533756.5:ENST00000527380.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	61	2	1.83501	1.98329	2.13157	0.0323448	0.0109031	0.133003	0.0923273
chr6	70504072	70504171	2894922	0	+	0.414141	(0.408,0.44]	chr6	274008	14	EXON_MRNA	EXON_MRNA:INTRON	FAM135A	ENSG00000082269.17	ENST00000505769.5:ENST00000515323.5:ENST00000418814.7:ENST00000457062.6:ENST00000361499.7:ENST00000370479.7:ENST00000194672.11:ENST00000505868.1:ENST00000393299.6:ENST00000425415.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	61	2	1.83501	1.98329	2.13157	0.0323448	0.0109031	0.133003	0.0923273
chr9	37274271	37274371	4119200	0	+	0.23	[0,0.28]	chr9	375389	874	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000461038.5:ENST00000488607.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	61	2	1.812	1.983285	2.15457	0.0729149	0.0269306	0.189235	0.135288
chr8	51854369	51854469	3946144	0	-	0.41	(0.408,0.44]	chr8	362026	39	INTRON	INTRON	PCMTD1	ENSG00000168300.14	ENST00000544451.2:ENST00000360540.9:ENST00000522514.6:ENST00000519559.1:ENST00000519975.1:ENST00000521344.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	49	2	1.45162	1.98327	2.51492	0.0451203	0.0329839	0.163518	0.133816
chr18	9484031	9484130	6871219	0	+	0.414141	(0.408,0.44]	chr18	680716	42	INTRON	INTRON	RALBP1	ENSG00000017797.13	ENST00000019317.8:ENST00000585015.6:ENST00000383432.8:ENST00000609094.2:ENST00000458039.3:ENST00000577221.1	protein_coding	protein_coding	protein_coding	protein_coding	5	51	2	1.69172	1.98318	2.27464	0.0486032	0.0158016	0.153946	0.109464
chr2	26349186	26349286	715041	0	+	0.53	(0.515,0.57]	chr2	82572	24	INTRON	INTRON	SELENOI	ENSG00000138018.19	ENST00000442141.5:ENST00000260585.12:ENST00000447170.1	protein_coding	protein_coding	protein_coding	protein_coding	7	55	2	1.33814	1.983155	2.62817	0.063703	0.004048	0.177689	0.0578376
chr4	128075093	128075193	2042735	0	+	0.47	(0.44,0.476]	chr4	202855	1	SS5_PROX	SS5_PROX:INTRON	LARP1B	ENSG00000138709.19	ENST00000512292.5:ENST00000326639.11:ENST00000508819.5:ENST00000394288.7:ENST00000432347.6:ENST00000649983.1:ENST00000650359.1:ENST00000648358.1	protein_coding	protein_coding	protein_coding	protein_coding	6	51	2	1.66775	1.983085	2.29842	0.0552483	0.0219883	0.165463	0.123836
chr2	174128393	174128492	1269649	0	-	0.313131	(0.28,0.32]	chr2	134275	42	INTRON	INTRON	OLA1	ENSG00000138430.16	ENST00000284719.8:ENST00000344357.9:ENST00000428402.6:ENST00000409546.5:ENST00000429575.1	protein_coding	protein_coding	protein_coding	protein_coding	6	74	2	1.56118	1.9828800000000002	2.40458	0.0467152	0.0141047	0.1676	0.0959618
chr3	23850681	23850781	1388177	0	+	0.45	(0.44,0.476]	chr3	145385	388	INTRON	INTRON	UBE2E1	ENSG00000170142.12	ENST00000306627.8:ENST00000346855.7:ENST00000495141.5:ENST00000442670.5:ENST00000424381.5:ENST00000467766.5:ENST00000475680.5:ENST00000452012.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	38	2	1.75627	1.9828800000000002	2.20949	0.0672585	0.0380723	0.183051	0.157702
chr3	48927090	48927184	1421535	0	+	0.468085	(0.44,0.476]	chr3	149475	5	UTR5	UTR5:EXON_MRNA:SS3_PROX:INTRON	ARIH2	ENSG00000177479.20	ENST00000478224.5:ENST00000430423.5:ENST00000452882.5:ENST00000498314.5:ENST00000474618.5:ENST00000449376.5:ENST00000490095.5:ENST00000356401.9:ENST00000495761.5:ENST00000483333.5:ENST00000482427.5:ENST00000488963.5:ENST00000420814.5:ENST00000486316.5:ENST00000449729.5:ENST00000433170.5:ENST00000474936.6:ENST00000466850.1:ENST00000484999.5:ENST00000470296.5:ENST00000463204.5:ENST00000452385.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	38	2	1.75627	1.9828800000000002	2.20949	0.0672585	0.0380723	0.183051	0.157702
chr6	87598112	87598211	2915675	0	+	0.454545	(0.44,0.476]	chr6	275466	28	INTRON	INTRON	ORC3	ENSG00000135336.16	ENST00000546266.5:ENST00000257789.4:ENST00000392844.8:ENST00000681069.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	64	2	1.62674	1.9828649999999999	2.33899	0.0253995	0.0142027	0.133676	0.0959987
chr16	23871520	23871619	6324115	0	+	0.414141	(0.408,0.44]	chr16	605697	23	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000645517.1:ENST00000498739.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	25	233	2	1.59163	1.982815	2.374	0.00464253	3.28641e-4	0.0629144	0.0167592
chr15	73623623	73623723	6221082	0	-	0.42	(0.408,0.44]	chr15	593920	237	INTRON	INTRON	NPTN	ENSG00000156642.17	ENST00000351217.10:ENST00000345330.9:ENST00000565325.5:ENST00000562924.5:ENST00000563691.5:ENST00000565282.5:ENST00000564551.1:ENST00000563753.1:ENST00000567198.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	80	2	1.87932	1.9827650000000001	2.08621	0.0172104	0.00683843	0.104099	0.0748032
chr1	160221710	160221798	571189	0	-	0.397727	(0.378,0.408]	chr1	69122	1	INTRON	INTRON	DCAF8	ENSG00000132716.19	ENST00000326837.6:ENST00000368073.7:ENST00000368074.6:ENST00000477163.1:ENST00000461888.5:ENST00000490368.5:ENST00000466253.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	53	2	1.8252	1.982745	2.14029	0.0619563	0.0106742	0.174514	0.0917199
chr21	39252278	39252377	7464912	0	-	0.373737	(0.35,0.378]	chr21	760483	10	INTRON	INTRON	BRWD1	ENSG00000185658.14	ENST00000333229.6:ENST00000342449.8:ENST00000446924.5:ENST00000380800.7:ENST00000430093.5:ENST00000445245.5:ENST00000445668.5:ENST00000412604.1:ENST00000455867.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	55	2	1.82281	1.982725	2.14264	0.0316938	0.0274795	0.144635	0.123904
chr3	37256769	37256869	1395889	0	+	0.47	(0.44,0.476]	chr3	146319	49	INTRON	INTRON	GOLGA4	ENSG00000144674.17	ENST00000435830.6:ENST00000444882.5:ENST00000356847.8:ENST00000450863.6:ENST00000361924.7:ENST00000429018.5:ENST00000431105.1:ENST00000419177.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	84	2	1.64357	1.982705	2.32184	0.0177224	0.00609071	0.11319	0.0676501
chr2	171140452	171140552	1263895	0	-	0.51	(0.476,0.515]	chr2	133921	222	INTRON	INTRON	TLK1	ENSG00000198586.14	ENST00000431350.7:ENST00000360843.7:ENST00000359766.7:ENST00000521943.5:ENST00000409443.6:ENST00000413010.5:ENST00000470340.1:ENST00000466220.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	58	2	1.91368	1.9826100000000002	2.05154	0.0336015	0.0135123	0.134145	0.101363
chr22	22308496	22308596	7482930	0	+	0.37	(0.35,0.378]	chr22	763449	4	SS3_PROX	SS3_PROX:INTRON	ENSG00000286129:BMS1P20	ENSG00000286129.1:ENSG00000272779.1	ENST00000652112.1:ENST00000413293.1	lncRNA	lncRNA	lncRNA:transcribed_unprocessed_pseudogene	lncRNA:transcribed_unprocessed_pseudogene	5	47	2	1.49446	1.982555	2.47065	0.054297	0.0386172	0.182243	0.142656
chr16	30246949	30247048	6472578	0	-	0.262626	[0,0.28]	chr16	625566	7	INTRON	INTRON	NPIPB13	ENSG00000198064.14	ENST00000568053.5	protein_coding	protein_coding	protein_coding	protein_coding	14	201	2	1.72517	1.9825249999999999	2.23988	0.0153152	0.00206593	0.100169	0.0421724
chr1	15889655	15889754	35084	0	+	0.353535	(0.35,0.378]	chr1	4272	126	INTRON	INTRON	SPEN	ENSG00000065526.12	ENST00000673875.1:ENST00000375759.8:ENST00000438066.1:ENST00000442985.1	protein_coding	protein_coding	protein_coding	protein_coding	5	56	2	1.7942	1.9824950000000001	2.17079	0.0378648	0.0225978	0.141212	0.124921
chr7	149556011	149556110	3671935	0	-	0.353535	(0.35,0.378]	chr7	340822	26	INTRON	INTRON	ZNF767P	ENSG00000133624.14	ENST00000463567.5:ENST00000472212.5:ENST00000684939.1:ENST00000690388.1:ENST00000486492.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	4	46	2	1.9755	1.982395	1.98929	0.0417909	0.0398617	0.161534	0.147075
chr4	126575705	126575804	2236466	0	-	0.30303	(0.28,0.32]	chr4	219023	1102	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	9	115	2	1.70122	1.9823849999999998	2.26355	0.0356118	0.00229405	0.138061	0.0439319
chrX	136878433	136878516	7897669	0	-	0.53012	(0.515,0.57]	chrX	804173	4	SS3_PROX	SS3_PROX:INTRON	RBMX	ENSG00000147274.14	ENST00000431446.7:ENST00000568578.5:ENST00000419968.6:ENST00000464781.5:ENST00000320676.11:ENST00000562646.5:ENST00000565438.1:ENST00000567262.5:ENST00000563370.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	69	2	1.96006	1.98237	2.00468	0.0166344	0.00725161	0.110511	0.072984
chr22	20065335	20065431	7478205	0	+	0.53125	(0.515,0.57]	chr22	762692	8	UTR3	UTR3:EXON_MRNA	TANGO2	ENSG00000183597.16	ENST00000401886.5:ENST00000420290.6:ENST00000432883.5:ENST00000434570.6:ENST00000447208.6:ENST00000456048.5:ENST00000398042.6:ENST00000399807.7:ENST00000327374.9:ENST00000401833.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	52	2	1.94493	1.982355	2.01978	0.0204583	0.0165522	0.122204	0.102621
chr8	129514690	129514790	4060429	0	-	0.31	(0.28,0.32]	chr8	369648	41	INTRON	INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1:ENST00000676273.1:ENST00000667643.1:ENST00000668791.1:ENST00000663716.1:ENST00000663572.1:ENST00000676148.1:ENST00000667962.1:ENST00000674877.1:ENST00000675316.1:ENST00000674656.1:ENST00000446592.7:ENST00000667341.1:ENST00000675186.1:ENST00000652971.1:ENST00000661447.1:ENST00000674863.1:ENST00000675498.1:ENST00000675527.1:ENST00000676108.1:ENST00000657647.1:ENST00000675589.1:ENST00000675913.1:ENST00000675109.1:ENST00000671632.1:ENST00000671311.1:ENST00000676099.1:ENST00000660652.1:ENST00000675522.1:ENST00000675183.1:ENST00000658861.1:ENST00000663991.1:ENST00000675044.1:ENST00000675435.1:ENST00000674639.1:ENST00000676069.1:ENST00000675532.1:ENST00000674762.1:ENST00000523151.6:ENST00000675948.1:ENST00000665364.1:ENST00000657251.1:ENST00000675166.1:ENST00000674883.1:ENST00000675867.1:ENST00000674580.1:ENST00000675393.1:ENST00000520048.1:ENST00000674906.1:ENST00000676030.1:ENST00000670588.1:ENST00000675072.1:ENST00000664936.1:ENST00000652914.1:ENST00000657069.1	lncRNA	lncRNA	lncRNA	lncRNA	8	101	2	1.71169	1.982335	2.25298	0.0253232	0.00791652	0.12011	0.0797304
chr22	16602814	16602913	7473368	0	+	0.646465	(0.57,1]	chr22	761972	2	INTRON	INTRON	TPTEP1:ENSG00000283633	ENSG00000100181.22:ENSG00000283633.1	ENST00000558085.6:ENST00000400593.6:ENST00000592918.5:ENST00000592107.5:ENST00000426585.5:ENST00000591299.1	lncRNA	lncRNA	lncRNA:transcribed_unprocessed_pseudogene	lncRNA:processed_transcript	14	67	2	1.51632	1.982245	2.44817	0.0140998	4.98378e-4	0.103219	0.0206993
chr22	30976250	30976348	7501323	0	+	0.367347	(0.35,0.378]	chr22	765297	12	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TUG1	ENSG00000253352.10	ENST00000646496.1:ENST00000644773.2:ENST00000569384.2:ENST00000643920.1:ENST00000519077.4:ENST00000643071.1:ENST00000644027.1:ENST00000647354.1:ENST00000643553.1:ENST00000643077.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	18	192	2	1.97788	1.9822250000000001	1.98657	0.00281569	0.00196834	0.047222600000000003	0.0411469
chr18	80132802	80132902	6938326	0	+	0.52	(0.515,0.57]	chr18	686197	3	SS3_PROX	SS3_PROX:INTRON	ADNP2	ENSG00000101544.9	ENST00000262198.9:ENST00000560752.5:ENST00000559951.5:ENST00000560561.1:ENST00000561195.1	protein_coding	protein_coding	protein_coding	protein_coding	9	76	2	1.73535	1.98221	2.22907	0.0165373	0.00383939	0.110511	0.0542786
chr2	130169961	130170061	1227751	0	-	0.47	(0.44,0.476]	chr2	130777	2	SS5_PROX	SS5_PROX:INTRON	SMPD4	ENSG00000136699.20	ENST00000431183.6:ENST00000454468.5:ENST00000680298.1:ENST00000351288.10:ENST00000433118.5:ENST00000412570.5:ENST00000409031.5:ENST00000439886.5:ENST00000680401.1:ENST00000680679.1:ENST00000680810.1:ENST00000680987.1:ENST00000430682.5:ENST00000435455.6:ENST00000451542.5:ENST00000680196.1:ENST00000473720.5:ENST00000439029.5:ENST00000681660.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	58	2	1.5191	1.9821199999999999	2.44514	0.0526241	0.0087381	0.160983	0.0845538
chr21	38113016	38113116	7464016	0	-	0.46	(0.44,0.476]	chr21	760303	133	INTRON	INTRON	DSCR4	ENSG00000184029.9	ENST00000398948.5:ENST00000328264.7:ENST00000482032.1	lncRNA	lncRNA	lncRNA	lncRNA	20	191	2	1.63736	1.9820349999999998	2.32671	0.00831527	2.50846e-4	0.0774402	0.0140762
chr17	29289110	29289209	6747747	0	-	0.323232	(0.32,0.35]	chr17	663234	10	INTRON	INTRON	NUFIP2	ENSG00000108256.9	ENST00000225388.9:ENST00000579665.1	protein_coding	protein_coding	protein_coding	protein_coding	5	60	2	1.61669	1.9818950000000002	2.3471	0.0578816	0.0156413	0.188651	0.101393
chr2	44411929	44412029	765839	0	+	0.23	[0,0.28]	chr2	86775	109	INTRON	INTRON	CAMKMT	ENSG00000143919.15	ENST00000378494.8:ENST00000402247.5:ENST00000407131.5:ENST00000403853.7:ENST00000428993.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	61	2	1.85666	1.98177	2.10688	0.0660997	0.0307985	0.181924	0.143385
chr16	56409505	56409588	6491120	0	-	0.337349	(0.32,0.35]	chr16	627721	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	AMFR	ENSG00000159461.15	ENST00000290649.10:ENST00000565445.5:ENST00000563664.1:ENST00000568657.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	59	2	1.94202	1.981675	2.02133	0.0486128	0.017146	0.153946	0.111072
chr3	172789962	172790062	1563624	0	+	0.35	(0.32,0.35]	chr3	161807	30	INTRON	INTRON	ECT2	ENSG00000114346.14	ENST00000232458.9:ENST00000540509.5:ENST00000392692.8:ENST00000417960.5:ENST00000441497.6	protein_coding	protein_coding	protein_coding	protein_coding	10	119	2	1.43561	1.98166	2.52771	0.0543363	5.57285e-4	0.164972	0.021494
chr12	133052278	133052378	5252725	0	+	0.43	(0.408,0.44]	chr12	499683	13	INTRON	INTRON	ZNF84	ENSG00000198040.11	ENST00000392319.6:ENST00000543758.5:ENST00000540031.5:ENST00000539354.6:ENST00000327668.11:ENST00000542874.5:ENST00000535439.2:ENST00000543124.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	42	2	1.81572	1.9815200000000002	2.14732	0.0626779	0.0237354	0.175915	0.129075
chr4	39327956	39328056	2128885	0	-	0.44	(0.408,0.44]	chr4	209869	2	SS3_PROX	SS3_PROX:INTRON	RFC1	ENSG00000035928.17	ENST00000381897.5:ENST00000349703.7:ENST00000418436.5:ENST00000504849.5:ENST00000512275.5:ENST00000503784.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	42	2	1.81572	1.9815200000000002	2.14732	0.0626779	0.0237354	0.175915	0.129075
chr2	175968969	175969069	1272867	0	-	0.38	(0.378,0.408]	chr2	134559	40	INTRON	INTRON	LNPK	ENSG00000144320.14	ENST00000272748.9:ENST00000544803.5:ENST00000409660.5	protein_coding	protein_coding	protein_coding	protein_coding	6	63	2	1.77782	1.9814699999999998	2.18512	0.0388177	0.00902136	0.143072	0.0851259
chr17	28560767	28560844	6744242	0	-	0.324675	(0.32,0.35]	chr17	662307	2	INTRON	INTRON	PIGS	ENSG00000087111.21	ENST00000268758.13:ENST00000395346.6:ENST00000308360.8:ENST00000582615.6:ENST00000580968.5:ENST00000465444.5:ENST00000577620.5:ENST00000584080.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	59	2	1.78201	1.981465	2.18092	0.0365003	0.0256608	0.153759	0.120491
chr1	236795373	236795455	342493	0	+	0.682927	(0.57,1]	chr1	39806	2	UTR5	UTR5:EXON_MRNA	MTR	ENSG00000116984.15	ENST00000680454.1:ENST00000366577.10:ENST00000674797.2:ENST00000652435.1:ENST00000679569.1:ENST00000650888.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	34	2	1.57876	1.981335	2.38391	0.0296165	0.0104374	0.128657	0.0902296
chr21	37366772	37366867	7406219	0	+	0.473684	(0.44,0.476]	chr21	754840	1	UTR5	UTR5:EXON_MRNA:INTRON	DYRK1A	ENSG00000157540.22	ENST00000646523.1:ENST00000647425.1:ENST00000647188.2	protein_coding	protein_coding	protein_coding	protein_coding	17	167	2	1.42895	1.98129	2.53363	0.024833	9.8404e-5	0.12011	0.00834688
chr7	1441437	1441531	3462091	0	-	0.553191	(0.515,0.57]	chr7	323678	9	EXON_MRNA	EXON_MRNA:INTRON	MICALL2	ENSG00000164877.19	ENST00000472100.5:ENST00000297508.8:ENST00000467394.5:ENST00000413446.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	20	163	2	1.85855	1.9812599999999998	2.10397	0.0023355	7.65398e-4	0.0433464	0.025449
chr10	60781996	60782096	4435803	0	+	0.36	(0.35,0.378]	chr10	409170	14	INTRON	INTRON	CDK1	ENSG00000170312.17	ENST00000519078.6:ENST00000475504.6:ENST00000316629.8:ENST00000519760.1:ENST00000395284.8:ENST00000448257.6:ENST00000373809.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	70	2	1.63783	1.9812349999999999	2.32464	0.0250627	0.0159285	0.133086	0.101453
chr4	139164376	139164476	2247219	0	-	0.55	(0.515,0.57]	chr4	219601	245	INTRON	INTRON	ELF2	ENSG00000109381.21	ENST00000394235.6:ENST00000686138.1:ENST00000511184.5:ENST00000511006.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	43	2	1.94493	1.98115	2.01737	0.0352218	0.0204583	0.137535	0.122204
chr16	2260802	2260899	6431619	0	-	0.463918	(0.44,0.476]	chr16	618787	22	INTRON	INTRON	RNPS1	ENSG00000205937.12	ENST00000397086.6:ENST00000566458.5:ENST00000320225.10:ENST00000566397.5:ENST00000565678.5:ENST00000561718.5:ENST00000568631.5:ENST00000569598.6:ENST00000301730.12:ENST00000567147.5:ENST00000565870.5:ENST00000561518.5:ENST00000564311.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	77	2	1.892	1.98108	2.07016	0.0151815	0.00935701	0.0994339	0.0858596
chr14	102606620	102606720	5822673	0	+	0.51	(0.476,0.515]	chr14	552490	129	INTRON	INTRON	RCOR1	ENSG00000089902.10	ENST00000262241.7	protein_coding	protein_coding	protein_coding	protein_coding	19	182	2	1.64957	1.9810750000000001	2.31258	0.00629318	5.5822e-4	0.0722266	0.0218161
chr17	51029322	51029421	6796093	0	-	0.343434	(0.32,0.35]	chr17	670985	76	INTRON	INTRON	SPAG9	ENSG00000008294.22	ENST00000262013.12:ENST00000510283.5:ENST00000505279.5:ENST00000357122.8:ENST00000514613.5:ENST00000505173.5:ENST00000576492.1:ENST00000510855.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	59	2	1.55682	1.98106	2.4053	0.0724487	0.0108284	0.188101	0.0920575
chr16	85609909	85610009	6415931	0	+	0.46	(0.44,0.476]	chr16	615470	532	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	9	88	2	1.96975	1.981015	1.99228	0.0123514	0.00615695	0.0914865	0.0711648
chr6	17658276	17658375	3065716	0	-	0.565657	(0.515,0.57]	chr6	284824	60	INTRON	INTRON	NUP153	ENSG00000124789.12	ENST00000613258.4:ENST00000537253.5:ENST00000262077.3	protein_coding	protein_coding	protein_coding	protein_coding	5	43	2	1.7492	1.980965	2.21273	0.0382504	0.0196151	0.15832	0.109486
chr19	12700367	12700464	7141143	0	-	0.556701	(0.515,0.57]	chr19	720637	13	UTR3	UTR3:EXON_MRNA	TNPO2	ENSG00000105576.16	ENST00000425528.6:ENST00000356861.9:ENST00000450764.6	protein_coding	protein_coding	protein_coding	protein_coding	9	72	2	1.50809	1.9809199999999998	2.45375	0.0294196	0.00273605	0.128055	0.0483437
chr1	108300808	108300908	176643	0	+	0.47	(0.44,0.476]	chr1	19153	161	INTRON	INTRON	SLC25A24P1	ENSG00000241361.8	ENST00000411846.6:ENST00000434803.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	10	90	2	1.5718	1.980915	2.39003	0.0170387	0.0106488	0.104099	0.0915714
chr1	207726707	207726807	304779	0	+	0.54	(0.515,0.57]	chr1	35076	16	INTRON	INTRON	CR1L	ENSG00000197721.17	ENST00000294997.10	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	7	61	2	1.92814	1.980875	2.03361	0.0325854	0.00827421	0.145164	0.0774402
chr22	18567504	18567604	7551027	0	-	0.37	(0.35,0.378]	chr22	771829	146	INTRON	INTRON	PI4KAP1	ENSG00000274602.5	ENST00000612500.4:ENST00000611748.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	16	165	2	1.54824	1.98083	2.41342	0.0153042	5.41231e-4	0.100099	0.0211001
chr7	157190781	157190881	3454470	0	+	0.35	(0.32,0.35]	chr7	322957	16	INTRON	INTRON	UBE3C	ENSG00000009335.18	ENST00000348165.10	protein_coding	protein_coding	protein_coding	protein_coding	13	145	2	1.77966	1.9807450000000002	2.18183	0.00678922	0.00419013	0.074388	0.0572176
chr9	112054534	112054634	4315558	0	-	0.38	(0.378,0.408]	chr9	396900	17	INTRON	INTRON	SUSD1	ENSG00000106868.17	ENST00000374270.8:ENST00000374263.7:ENST00000355396.7:ENST00000374264.6:ENST00000475283.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	88	2	1.53546	1.9807000000000001	2.42594	0.0265688	0.00428028	0.134088	0.0574861
chr1	201868247	201868347	292163	0	+	0.32	(0.28,0.32]	chr1	33604	2	SS3_PROX	SS3_PROX:INTRON	IPO9	ENSG00000198700.10	ENST00000361565.9	protein_coding	protein_coding	protein_coding	protein_coding	6	76	2	1.67134	1.9806599999999999	2.28998	0.0387947	0.0166401	0.143072	0.110511
chr9	130800653	130800753	4214731	0	+	0.27	[0,0.28]	chr9	386427	858	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000393293.4	protein_coding	protein_coding	protein_coding	protein_coding	7	105	2	1.64178	1.9805700000000002	2.31936	0.0390996	0.00962163	0.161325	0.0823918
chr3	197126464	197126564	1901770	0	-	0.33	(0.32,0.35]	chr3	190575	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	DLG1	ENSG00000075711.21	ENST00000667157.1:ENST00000346964.6:ENST00000656428.1:ENST00000663148.1:ENST00000655488.1:ENST00000357674.9:ENST00000671185.1:ENST00000658701.1:ENST00000667104.1:ENST00000661336.1:ENST00000669565.1:ENST00000670455.1:ENST00000656087.1:ENST00000670366.1:ENST00000653583.1:ENST00000653795.1:ENST00000671246.1:ENST00000661453.1:ENST00000665728.1:ENST00000664564.1:ENST00000653331.1:ENST00000660432.1:ENST00000660898.1:ENST00000657381.1:ENST00000659221.1:ENST00000654737.1:ENST00000669332.1:ENST00000659716.1:ENST00000660553.1:ENST00000664991.1:ENST00000419354.5:ENST00000661440.1:ENST00000667971.1:ENST00000670935.1:ENST00000668578.1:ENST00000666007.1:ENST00000661229.1:ENST00000660237.1:ENST00000657098.1:ENST00000661013.1:ENST00000436682.6:ENST00000452595.5:ENST00000662727.1:ENST00000422288.6:ENST00000448528.6:ENST00000443183.5:ENST00000656944.1:ENST00000392382.6:ENST00000450955.5:ENST00000658155.1:ENST00000669714.1:ENST00000654733.1:ENST00000469073.2:ENST00000419227.5:ENST00000392381.7:ENST00000471733.5:ENST00000419553.6:ENST00000447466.1:ENST00000661808.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	50	2	1.45026	1.980435	2.51061	0.0622478	0.0364463	0.194723	0.138959
chr17	30739377	30739477	6589880	0	+	0.45	(0.44,0.476]	chr17	640853	13	EXON_MRNA	EXON_MRNA:INTRON	SUZ12P1:ENSG00000280069	ENSG00000264538.7:ENSG00000280069.1	ENST00000578070.5:ENST00000579526.5:ENST00000690405.1:ENST00000497969.6:ENST00000578195.6:ENST00000582557.5:ENST00000623719.1	TEC	TEC	TEC:transcribed_unprocessed_pseudogene	TEC:processed_transcript:transcribed_unprocessed_pseudogene	19	182	2	1.91914	1.9804300000000001	2.04172	0.00323421	0.00100554	0.0507251	0.0292285
chr7	10591064	10591164	3482690	0	-	0.33	(0.32,0.35]	chr7	325772	291	INTRON	INTRON	MGC4859	ENSG00000283117.1	ENST00000634803.1	lncRNA	lncRNA	lncRNA	lncRNA	4	44	2	1.72898	1.9804	2.23182	0.068598	0.0425433	0.184298	0.161951
chr6	18261271	18261370	3069218	0	-	0.565657	(0.515,0.57]	chr6	285214	25	INTRON	INTRON	DEK	ENSG00000124795.17	ENST00000652689.1:ENST00000651624.1:ENST00000515770.2:ENST00000651992.1:ENST00000507591.2:ENST00000505224.5:ENST00000244776.11:ENST00000652576.1:ENST00000503715.5:ENST00000515742.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	66	2	1.94094	1.9803600000000001	2.01978	0.0165522	0.00719628	0.102621	0.0756137
chr19	4411054	4411154	7001847	0	+	0.34	(0.32,0.35]	chr19	694523	9	INTRON	INTRON	CHAF1A	ENSG00000167670.16	ENST00000301280.10:ENST00000587739.1	protein_coding	protein_coding	protein_coding	protein_coding	6	68	2	1.9182	1.9802849999999999	2.04237	0.0375542	0.0141462	0.140222	0.103512
chr3	152269978	152270078	1534994	0	+	0.52	(0.515,0.57]	chr3	159980	2	SS5_PROX	SS5_PROX:INTRON	MBNL1	ENSG00000152601.18	ENST00000477171.1:ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000461436.1:ENST00000495875.6:ENST00000324210.10:ENST00000493459.5:ENST00000459747.1:ENST00000460591.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	43	2	1.56681	1.9801600000000001	2.39351	0.064862	0.0100431	0.179394	0.0881096
chr2	171088327	171088426	1263371	0	-	0.40404	(0.378,0.408]	chr2	133909	51	INTRON	INTRON	TLK1	ENSG00000198586.14	ENST00000431350.7:ENST00000360843.7:ENST00000359766.7:ENST00000521943.5:ENST00000409443.6:ENST00000413010.5:ENST00000486857.5:ENST00000470340.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	72	2	1.9714	1.98014	1.98888	0.0205239	0.0109363	0.110999	0.0924799
chr16	68145078	68145178	6370825	0	+	0.41	(0.408,0.44]	chr16	612207	64	INTRON	INTRON	NFATC3	ENSG00000072736.19	ENST00000563319.5:ENST00000569766.5:ENST00000553077.5:ENST00000566301.5:ENST00000549350.5:ENST00000566893.5:ENST00000575270.5:ENST00000561714.5:ENST00000346183.8:ENST00000568466.6:ENST00000539828.6:ENST00000562171.1:ENST00000349223.9:ENST00000329524.8:ENST00000379165.8:ENST00000562926.5:ENST00000570212.5:ENST00000563796.5:ENST00000567152.5:ENST00000563288.5:ENST00000535127.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	64	2	1.69566	1.9800300000000002	2.2644	0.0453922	0.00768371	0.164236	0.0753803
chr19	10822345	10822442	7014844	0	+	0.505155	(0.476,0.515]	chr19	697032	19	INTRON	INTRON	DNM2	ENSG00000079805.19	ENST00000355667.11:ENST00000389253.9:ENST00000585892.5:ENST00000359692.10:ENST00000408974.8:ENST00000681972.1:ENST00000590806.5:ENST00000590787.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	51	2	1.79693	1.9799950000000002	2.16306	0.0649782	0.00973468	0.179417	0.0877284
chr1	117087218	117087316	197074	0	+	0.316327	(0.28,0.32]	chr1	21846	3	INTRON	INTRON	TTF2	ENSG00000116830.12	ENST00000369466.9	protein_coding	protein_coding	protein_coding	protein_coding	7	89	2	1.86798	1.9799799999999999	2.09198	0.0335733	0.00780964	0.134145	0.0788246
chrX	124064451	124064551	7717807	0	+	0.54	(0.515,0.57]	chrX	789584	4	SS5_PROX	SS5_PROX:INTRON	STAG2	ENSG00000101972.20	ENST00000218089.13:ENST00000687810.1:ENST00000687071.1:ENST00000469481.1:ENST00000371160.5:ENST00000687852.1:ENST00000371145.8:ENST00000692982.1:ENST00000371157.7:ENST00000691035.1:ENST00000686802.1:ENST00000686127.1:ENST00000371144.7:ENST00000693144.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	50	2	1.94248	1.9799250000000002	2.01737	0.0352218	0.0115668	0.137535	0.0962115
chr2	239983717	239983817	1345299	0	-	0.41	(0.408,0.44]	chr2	141050	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	NDUFA10	ENSG00000130414.13	ENST00000419408.5:ENST00000679183.1:ENST00000677057.1:ENST00000676782.1:ENST00000677407.1:ENST00000676929.1:ENST00000678455.1:ENST00000252711.7:ENST00000677692.1:ENST00000476216.6:ENST00000677395.1:ENST00000678188.1:ENST00000677979.1:ENST00000678914.1:ENST00000678562.1:ENST00000678832.1:ENST00000677155.1:ENST00000677764.1:ENST00000677294.1:ENST00000678468.1:ENST00000677324.1:ENST00000678158.1:ENST00000676491.1:ENST00000677114.1:ENST00000404554.5:ENST00000620965.5:ENST00000485344.6:ENST00000679308.1:ENST00000677567.1:ENST00000679158.1:ENST00000443626.5:ENST00000444548.6:ENST00000448880.6:ENST00000677490.1:ENST00000307300.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	42	2	1.88062	1.979905	2.07919	0.0534548	0.0291499	0.162935	0.14147
chr21	6662953	6663052	7425803	0	-	0.434343	(0.408,0.44]	chr21	757499	30	INTRON	INTRON	ENSG00000280145	ENSG00000280145.3	ENST00000625185.3:ENST00000624846.3:ENST00000623313.1:ENST00000624965.1	lncRNA	lncRNA	lncRNA	lncRNA	4	42	2	1.88062	1.979905	2.07919	0.0534548	0.0291499	0.162935	0.14147
chr6	15258957	15259057	2823075	0	+	0.41	(0.408,0.44]	chr6	265190	96	INTRON	INTRON	JARID2	ENSG00000008083.14	ENST00000341776.7:ENST00000397311.4	protein_coding	protein_coding	protein_coding	protein_coding	4	42	2	1.88062	1.979905	2.07919	0.0534548	0.0291499	0.162935	0.14147
chr6	154741356	154741455	3001896	0	+	0.434343	(0.408,0.44]	chr6	280731	71	INTRON	INTRON	SCAF8	ENSG00000213079.10	ENST00000367186.7:ENST00000417268.3:ENST00000461219.5:ENST00000367178.8:ENST00000464628.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	76	2	1.46762	1.9798999999999998	2.49218	0.0267854	0.00855168	0.134871	0.0780217
chr6	7122875	7122975	2798514	0	+	0.42	(0.408,0.44]	chr6	263723	138	INTRON	INTRON	RREB1	ENSG00000124782.21	ENST00000379933.7:ENST00000491191.5:ENST00000471433.5:ENST00000379938.7:ENST00000467782.5:ENST00000349384.10:ENST00000334984.10:ENST00000475946.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	62	2	1.8749	1.97988	2.08486	0.0264246	0.0145898	0.133676	0.0981689
chr13	114315838	114315938	5551091	0	+	0.55	(0.515,0.57]	chr13	530596	8	INTRON	INTRON	CHAMP1	ENSG00000198824.7	ENST00000646956.1:ENST00000463003.2:ENST00000645174.1:ENST00000361283.4:ENST00000646155.1:ENST00000478022.3:ENST00000644294.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	33	2	1.49871	1.979875	2.46104	0.0770828	0.032841	0.196285	0.145164
chr19	5606425	5606524	7124186	0	-	0.454545	(0.44,0.476]	chr19	717006	11	INTRON	INTRON	SAFB2	ENSG00000130254.12	ENST00000252542.9:ENST00000591123.5:ENST00000592599.5:ENST00000591101.5:ENST00000591310.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	61	2	1.61163	1.97969	2.34775	0.0598319	0.00466011	0.169278	0.0629753
chr9	37163433	37163533	4118089	0	+	0.37	(0.35,0.378]	chr9	375384	33	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000322831.6:ENST00000461038.5:ENST00000488607.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	27	259	2	1.51166	1.979675	2.44769	0.00605432	3.69881e-4	0.0701801	0.0178615
chr15	66602426	66602526	6050985	0	+	0.5	(0.476,0.515]	chr15	576221	198	INTRON	INTRON	LINC01169	ENSG00000259471.1	ENST00000558797.1	lncRNA	lncRNA	lncRNA	lncRNA	7	69	2	1.75142	1.979655	2.20789	0.0259024	0.00820497	0.121522	0.081115
chr2	159730971	159731071	899671	0	+	0.55	(0.515,0.57]	chr2	99528	14	INTRON	INTRON	MARCHF7	ENSG00000136536.15	ENST00000539065.5:ENST00000259050.8:ENST00000409175.6:ENST00000421037.1:ENST00000473749.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	59	2	1.97035	1.979575	1.9888	0.0195832	0.00963364	0.109483	0.086971
chrX	74003273	74003372	7682694	0	+	0.40404	(0.378,0.408]	chrX	786653	24	INTRON	INTRON	JPX	ENSG00000225470.8	ENST00000664637.1:ENST00000639185.1:ENST00000655090.1:ENST00000640437.1:ENST00000660546.1:ENST00000667886.1:ENST00000660840.1:ENST00000657179.1:ENST00000670506.1:ENST00000667573.1:ENST00000660856.1:ENST00000660836.1:ENST00000668590.1:ENST00000602772.5:ENST00000657372.1:ENST00000657096.1:ENST00000602985.6:ENST00000670685.1:ENST00000654374.1:ENST00000660087.1:ENST00000664295.1:ENST00000654005.1:ENST00000669149.1:ENST00000659852.1:ENST00000656509.1:ENST00000602294.6:ENST00000667294.1:ENST00000663470.1:ENST00000602920.6:ENST00000671021.1:ENST00000653929.1:ENST00000671518.1:ENST00000670408.1:ENST00000668488.1:ENST00000666318.1	lncRNA	lncRNA	lncRNA	lncRNA	8	75	2	1.395	1.97954	2.56408	0.0467334	0.00566993	0.151763	0.0678837
chr7	2366898	2366998	3269752	0	+	0.4	(0.378,0.408]	chr7	303833	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	EIF3B	ENSG00000106263.19	ENST00000360876.9:ENST00000397011.2:ENST00000463229.2:ENST00000468250.2:ENST00000466199.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	11	108	2	1.90812	1.97946	2.0508	0.0264295	0.00164553	0.122506	0.0374638
chr7	23530980	23531080	3503945	0	-	0.35	(0.32,0.35]	chr7	326971	4	SS5_PROX	SS5_PROX:INTRON	TRA2A	ENSG00000164548.12	ENST00000297071.9:ENST00000392502.8:ENST00000538367.6:ENST00000621813.4:ENST00000494255.5:ENST00000474586.5:ENST00000490942.1:ENST00000448549.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	13	111	2	1.20421	1.9794200000000002	2.75463	0.0421483	0.00387748	0.161744	0.0543578
chr15	58708279	58708379	6193100	0	-	0.36	(0.35,0.378]	chr15	589982	5	INTRON	INTRON	ADAM10	ENSG00000137845.15	ENST00000260408.8:ENST00000402627.5:ENST00000561288.1:ENST00000559053.1:ENST00000558733.5:ENST00000439637.5:ENST00000497846.5:ENST00000558004.1:ENST00000560608.5:ENST00000561149.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	55	2	1.5118	1.979405	2.44701	0.0789277	0.00900997	0.198963	0.0851009
chr1	6191937	6192035	366122	0	-	0.459184	(0.44,0.476]	chr1	43018	48	INTRON	INTRON	RPL22	ENSG00000116251.11	ENST00000234875.9:ENST00000480661.1:ENST00000497965.5:ENST00000471204.5:ENST00000465387.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	86	2	1.40934	1.97939	2.54944	0.0307189	0.00591346	0.13151	0.0694038
chr2	113586287	113586385	854101	0	+	0.469388	(0.44,0.476]	chr2	95852	20	INTRON	INTRON	WASH2P	ENSG00000146556.15	ENST00000686495.1:ENST00000692602.1:ENST00000688542.1:ENST00000685302.1:ENST00000685435.1:ENST00000685518.1:ENST00000691953.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	5	47	2	1.56252	1.9792800000000002	2.39604	0.0465207	0.0404291	0.161534	0.151387
chr9	98845284	98845380	4174036	0	+	0.53125	(0.515,0.57]	chr9	380397	7	INTRON	INTRON	GALNT12	ENSG00000119514.7	ENST00000375011.4	protein_coding	protein_coding	protein_coding	protein_coding	13	103	2	1.1737	1.9792549999999998	2.78481	0.0527436	2.42617e-4	0.178673	0.0143397
chr19	34445719	34445818	7053300	0	+	0.434343	(0.408,0.44]	chr19	703531	2	INTRON	INTRON	UBA2	ENSG00000126261.13	ENST00000586313.1:ENST00000590048.6:ENST00000246548.9:ENST00000439527.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	78	2	1.60905	1.979225	2.3494	0.02971	0.00462504	0.129022	0.062717
chr12	70315007	70315107	5167161	0	+	0.51	(0.476,0.515]	chr12	489427	36	INTRON	INTRON	CNOT2	ENSG00000111596.14	ENST00000418359.7:ENST00000552319.5:ENST00000550160.5:ENST00000551661.5:ENST00000551132.5:ENST00000548021.5:ENST00000550641.6:ENST00000229195.8:ENST00000552915.5:ENST00000549443.5:ENST00000552483.5:ENST00000547321.5:ENST00000553020.5:ENST00000548159.5:ENST00000549750.5:ENST00000551043.5:ENST00000548599.5:ENST00000550194.5:ENST00000551873.5:ENST00000547867.5:ENST00000552151.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	50	2	1.63838	1.9791949999999998	2.32001	0.0555021	0.0136217	0.165463	0.101682
chr5	65975107	65975207	2371333	0	+	0.48	(0.476,0.515]	chr5	228480	61	INTRON	INTRON	ERBIN	ENSG00000112851.15	ENST00000380943.6:ENST00000507490.1:ENST00000416865.6:ENST00000380935.5:ENST00000284037.10:ENST00000380938.6:ENST00000511297.5:ENST00000506030.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	50	2	1.63838	1.9791949999999998	2.32001	0.0555021	0.0136217	0.165463	0.101682
chr12	110293911	110294010	5226226	0	+	0.545455	(0.515,0.57]	chr12	495240	14	INTRON	INTRON	ATP2A2	ENSG00000174437.18	ENST00000552636.2:ENST00000308664.10:ENST00000539276.7:ENST00000377685.9:ENST00000548169.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	46	2	1.3492	1.979095	2.60899	0.0480671	0.0232669	0.171405	0.118148
chr18	36169368	36169465	6891846	0	+	0.453608	(0.44,0.476]	chr18	683075	18	INTRON	INTRON	ELP2	ENSG00000134759.14	ENST00000351393.10:ENST00000442325.6:ENST00000358232.11:ENST00000423854.6:ENST00000539560.5:ENST00000350494.10:ENST00000542824.5:ENST00000540766.5:ENST00000545302.5:ENST00000541748.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	104	2	1.92523	1.979045	2.03286	0.00977911	0.00400446	0.0835427	0.057767
chr1	36226262	36226362	72949	0	+	0.53	(0.515,0.57]	chr1	9371	4	INTRON	INTRON	THRAP3	ENSG00000054118.15	ENST00000469141.6:ENST00000648638.1:ENST00000354618.10	protein_coding	protein_coding	protein_coding	protein_coding	7	59	2	1.68687	1.979015	2.27116	0.0300837	0.00601759	0.129186	0.0700813
chr4	39768860	39768959	1953702	0	+	0.444444	(0.44,0.476]	chr4	195650	77	INTRON	INTRON	UBE2K	ENSG00000078140.14	ENST00000510934.5:ENST00000261427.10:ENST00000438068.6:ENST00000513231.5:ENST00000503368.5:ENST00000445950.2:ENST00000510719.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	11	104	2	1.59515	1.978885	2.36262	0.0165796	0.00255041	0.110511	0.0449067
chr7	107142739	107142838	3378152	0	+	0.424242	(0.408,0.44]	chr7	316270	14	INTRON	INTRON	PRKAR2B	ENSG00000005249.13	ENST00000265717.5:ENST00000488792.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	15	146	2	1.57853	1.9788199999999998	2.37911	0.0118585	8.64728e-4	0.0962115	0.0268667
chr7	50759106	50759204	3532336	0	-	0.520408	(0.515,0.57]	chr7	329519	27	INTRON	INTRON	GRB10	ENSG00000106070.20	ENST00000335866.7:ENST00000401949.6:ENST00000644769.1:ENST00000644879.1:ENST00000402497.6:ENST00000407526.6:ENST00000645075.2:ENST00000439044.7:ENST00000644716.1:ENST00000483819.1:ENST00000470992.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	69	2	1.53845	1.978815	2.41918	0.0475376	0.0013845	0.153019	0.0341261
chr3	10101262	10101357	1362984	0	+	0.442105	(0.44,0.476]	chr3	143645	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	FANCD2	ENSG00000144554.13	ENST00000675286.1:ENST00000419585.5:ENST00000421731.5:ENST00000470028.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	77	2	1.53117	1.9788	2.42643	0.0377545	0.0033369	0.140863	0.0528877
chr1	39437276	39437376	78319	0	+	0.37	(0.35,0.378]	chr1	10095	1	SS3_PROX	SS3_PROX:INTRON	MACF1	ENSG00000127603.32	ENST00000361689.7:ENST00000567887.5:ENST00000372915.8:ENST00000564288.6:ENST00000671089.2:ENST00000372925.6:ENST00000289893.8:ENST00000686067.1:ENST00000687997.1:ENST00000683517.1:ENST00000469490.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	87	2	1.90784	1.978755	2.04967	0.0165983	0.00827328	0.102621	0.0813266
chrX	154790212	154790302	7915451	0	-	0.5	(0.476,0.515]	chrX	806152	2	SS3_PROX	SS3_PROX:INTRON	MPP1	ENSG00000130830.15	ENST00000369534.8:ENST00000413259.7:ENST00000439370.5:ENST00000393531.5:ENST00000453245.5:ENST00000494170.1:ENST00000462825.5:ENST00000393529.5:ENST00000475943.5:ENST00000428488.1:ENST00000488754.5:ENST00000417435.5:ENST00000488694.1:ENST00000369531.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	20	171	2	1.70831	1.978755	2.2492	0.00284112	0.00238578	0.0493461	0.0439909
chr7	10733101	10733201	3484111	0	-	0.47	(0.44,0.476]	chr7	325772	1712	INTRON	INTRON	MGC4859	ENSG00000283117.1	ENST00000634803.1	lncRNA	lncRNA	lncRNA	lncRNA	7	70	2	1.7651	1.9787	2.1923	0.039388	0.0043698	0.143072	0.0604104
chrX	41340187	41340276	7645711	0	+	0.404494	(0.378,0.408]	chrX	782500	3	UTR5	UTR5:EXON_MRNA:SS3_PROX:INTRON	DDX3X	ENSG00000215301.11	ENST00000625837.2:ENST00000626301.2:ENST00000629785.2:ENST00000630255.2:ENST00000630370.2:ENST00000630858.2:ENST00000629496.3:ENST00000610559.5:ENST00000611546.2:ENST00000478993.5:ENST00000457138.7:ENST00000644876.2:ENST00000399959.7:ENST00000644074.1:ENST00000645338.1:ENST00000646196.1:ENST00000642793.1:ENST00000646940.1:ENST00000644307.1:ENST00000645561.1:ENST00000645080.1:ENST00000642597.1:ENST00000642722.1:ENST00000644109.1:ENST00000644958.1:ENST00000646122.1:ENST00000644513.1:ENST00000645589.1:ENST00000441189.4:ENST00000646822.1:ENST00000631641.2:ENST00000615742.4:ENST00000647219.1:ENST00000646223.1:ENST00000643963.1:ENST00000646319.1:ENST00000645783.1:ENST00000642624.1:ENST00000542215.5:ENST00000644073.1:ENST00000644677.1:ENST00000615313.5:ENST00000642322.1:ENST00000622198.5:ENST00000645120.1:ENST00000646107.1:ENST00000646627.1:ENST00000645253.1:ENST00000642589.1:ENST00000645380.1:ENST00000646390.1:ENST00000642424.1:ENST00000642161.1:ENST00000645574.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	12	115	2	1.65294	1.97862	2.3043	0.0106624	0.0035117	0.0916795	0.0525467
chr18	77986839	77986918	6990227	0	-	0.468354	(0.44,0.476]	chr18	691907	2	EXON_LNCRNA	EXON_LNCRNA:INTRON	LINC01029	ENSG00000265843.3	ENST00000657337.1:ENST00000669341.1:ENST00000671271.1:ENST00000668585.1:ENST00000667842.1:ENST00000661306.1:ENST00000662598.1:ENST00000662085.1:ENST00000582805.1:ENST00000656930.1:ENST00000578833.3	lncRNA	lncRNA	lncRNA	lncRNA	12	116	2	1.71377	1.9786100000000002	2.24345	0.0102504	0.00250928	0.089002	0.0446195
chr8	26310613	26310712	3716287	0	+	0.313131	(0.28,0.32]	chr8	345372	56	INTRON	INTRON	PPP2R2A	ENSG00000221914.11	ENST00000380737.8:ENST00000520329.5:ENST00000518254.5:ENST00000524169.5:ENST00000518397.5:ENST00000522535.5:ENST00000665949.1:ENST00000522150.5:ENST00000523473.5:ENST00000521095.5:ENST00000660435.1:ENST00000523925.5:ENST00000524099.5:ENST00000315985.7:ENST00000519636.5:ENST00000522482.5:ENST00000521557.5:ENST00000519439.5:ENST00000521484.5:ENST00000523964.5:ENST00000667651.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	12	145	2	1.97026	1.97861	1.98696	0.0154633	0.00294602	0.100909	0.049779
chr1	88735090	88735190	156277	0	+	0.32	(0.28,0.32]	chr1	17045	501	INTRON	INTRON	PKN2	ENSG00000065243.20	ENST00000316005.11:ENST00000370521.8:ENST00000370513.9	protein_coding	protein_coding	protein_coding	protein_coding	4	54	2	1.90263	1.978605	2.05458	0.0503272	0.0381508	0.17488	0.141764
chr16	9101684	9101784	6285472	0	+	0.32	(0.28,0.32]	chr16	601924	83	INTRON	INTRON	C16orf72	ENSG00000182831.12	ENST00000327827.12:ENST00000574285.2	protein_coding	protein_coding	protein_coding	protein_coding	4	54	2	1.90263	1.978605	2.05458	0.0503272	0.0381508	0.17488	0.141764
chr2	112079862	112079961	850569	0	+	0.282828	(0.28,0.32]	chr2	95286	22	INTRON	INTRON	TMEM87B	ENSG00000153214.11	ENST00000283206.9:ENST00000650799.1:ENST00000452614.5:ENST00000452029.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	54	2	1.90263	1.978605	2.05458	0.0503272	0.0381508	0.17488	0.141764
chr2	241321665	241321763	1053666	0	+	0.326531	(0.32,0.35]	chr2	112202	10	INTRON	INTRON	SEPTIN2	ENSG00000168385.18	ENST00000391973.6:ENST00000428282.5:ENST00000492978.5:ENST00000360051.7:ENST00000407017.5:ENST00000445030.5:ENST00000428524.5:ENST00000469434.5:ENST00000616972.4:ENST00000495463.5:ENST00000482304.5:ENST00000475474.5:ENST00000401990.5:ENST00000469175.5:ENST00000407971.5:ENST00000461048.5:ENST00000457335.5:ENST00000436795.5:ENST00000494824.5:ENST00000411484.5:ENST00000462147.5:ENST00000434955.5:ENST00000466211.5:ENST00000391971.7:ENST00000402092.6:ENST00000484740.1:ENST00000473479.5:ENST00000464128.5:ENST00000441533.5:ENST00000467971.5:ENST00000425899.5:ENST00000443492.5:ENST00000437066.5:ENST00000429791.5:ENST00000420786.5:ENST00000475823.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	107	2	1.76568	1.9785949999999999	2.19151	0.0114722	0.00911113	0.0888882	0.0855292
chr20	43708098	43708195	7276474	0	+	0.505155	(0.476,0.515]	chr20	739765	24	INTRON	INTRON	MYBL2	ENSG00000101057.16	ENST00000396863.8:ENST00000217026.5	protein_coding	protein_coding	protein_coding	protein_coding	6	61	2	1.86014	1.9785549999999998	2.09697	0.0277606	0.0136924	0.137011	0.0949306
chr12	110298734	110298834	5226277	0	+	0.32	(0.28,0.32]	chr12	495250	16	INTRON	INTRON	ATP2A2	ENSG00000174437.18	ENST00000308664.10:ENST00000539276.7:ENST00000377685.9:ENST00000548169.2:ENST00000550248.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	64	2	1.90249	1.978535	2.05458	0.0381508	0.0261803	0.141764	0.133676
chr3	48082775	48082875	1687439	0	-	0.31	(0.28,0.32]	chr3	172280	665	INTRON	INTRON	MAP4	ENSG00000047849.22	ENST00000395734.7:ENST00000426837.6:ENST00000360240.10:ENST00000423088.5:ENST00000439356.2:ENST00000468075.2	protein_coding	protein_coding	protein_coding	protein_coding	5	64	2	1.90249	1.978535	2.05458	0.0381508	0.0261803	0.141764	0.133676
chr8	43066194	43066292	3745949	0	+	0.316327	(0.28,0.32]	chr8	348528	16	INTRON	INTRON	FNTA	ENSG00000168522.13	ENST00000533559.5:ENST00000526755.5:ENST00000302279.8:ENST00000527153.5:ENST00000533383.5:ENST00000533998.5:ENST00000524546.5:ENST00000531266.5:ENST00000533368.1:ENST00000525699.5:ENST00000529687.5:ENST00000533336.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	102	2	1.67134	1.978485	2.28563	0.0387947	0.00355956	0.143072	0.0548355
chr5	6607584	6607684	2566512	0	-	0.44	(0.408,0.44]	chr5	245906	2	SS3_PROX	SS3_PROX:INTRON	NSUN2	ENSG00000037474.15	ENST00000264670.11:ENST00000504374.5:ENST00000505892.5:ENST00000506139.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	58	2	1.55035	1.97848	2.40661	0.0455214	0.011475	0.164236	0.0888882
chr16	15950898	15950997	6307771	0	+	0.353535	(0.35,0.378]	chr16	603510	7	INTRON	INTRON	ABCC1	ENSG00000103222.20	ENST00000574224.2:ENST00000678422.1:ENST00000677164.1:ENST00000399408.7:ENST00000572882.3:ENST00000399410.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	70	2	1.43253	1.97824	2.52395	0.0486238	0.00824736	0.173047	0.0773378
chr17	41986165	41986264	6770542	0	-	0.474747	(0.44,0.476]	chr17	666612	2	INTRON	INTRON	DNAJC7	ENSG00000168259.17	ENST00000316603.12:ENST00000457167.9:ENST00000586335.2:ENST00000674306.1:ENST00000426588.7:ENST00000674355.1:ENST00000674504.1:ENST00000674472.1:ENST00000674233.1:ENST00000674166.1:ENST00000674179.1:ENST00000674481.1:ENST00000674249.1:ENST00000585866.6:ENST00000589576.6:ENST00000674214.1:ENST00000588814.5:ENST00000590774.6:ENST00000674303.1:ENST00000674453.1:ENST00000674252.1:ENST00000674287.1:ENST00000674497.1:ENST00000674411.1:ENST00000585693.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	42	2	1.93084	1.97821	2.02558	0.0443175	0.0363567	0.162302	0.138959
chr16	89543667	89543765	6420716	0	+	0.571429	(0.57,1]	chr16	616270	8	EXON_MRNA	EXON_MRNA:INTRON	SPG7	ENSG00000197912.16	ENST00000647079.1:ENST00000646303.1:ENST00000643649.1:ENST00000644498.1:ENST00000645897.1:ENST00000643668.1:ENST00000644225.1:ENST00000645818.2:ENST00000645977.1:ENST00000645063.1:ENST00000646263.1:ENST00000643724.1:ENST00000644781.1:ENST00000644901.1:ENST00000645042.1:ENST00000646531.1:ENST00000646930.1:ENST00000644210.1:ENST00000646589.1:ENST00000268704.7:ENST00000646826.1:ENST00000646716.1:ENST00000643345.1:ENST00000646958.1:ENST00000643105.1:ENST00000645354.1:ENST00000642334.1:ENST00000647227.1:ENST00000646445.1:ENST00000643954.1:ENST00000646399.1:ENST00000644671.1:ENST00000644748.1:ENST00000643496.1:ENST00000647032.1:ENST00000644751.1:ENST00000642427.1:ENST00000643370.1:ENST00000645886.1:ENST00000646454.1:ENST00000561945.2:ENST00000644171.1:ENST00000566682.2:ENST00000645258.1:ENST00000644044.1:ENST00000642263.1:ENST00000644556.1:ENST00000645842.1:ENST00000643734.1:ENST00000642814.1:ENST00000644061.1:ENST00000643350.1:ENST00000645392.1:ENST00000647302.1:ENST00000644930.1:ENST00000647123.1:ENST00000643409.1:ENST00000642226.1:ENST00000646005.1:ENST00000642984.1:ENST00000647491.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	48	2	1.71424	1.978155	2.24207	0.0279017	0.00159402	0.137011	0.0364566
chr17	64505496	64505596	6815876	0	-	0.61	(0.57,1]	chr17	673829	1	CDS_START	CDS_START:CDS:EXON_MRNA:SS5_PROX:INTRON	DDX5	ENSG00000108654.16	ENST00000225792.10:ENST00000678890.1:ENST00000676601.1:ENST00000676575.1:ENST00000676969.1:ENST00000678810.1:ENST00000585317.2:ENST00000678110.1:ENST00000580026.6:ENST00000676785.1:ENST00000585111.2:ENST00000577922.6:ENST00000450599.7:ENST00000678814.1:ENST00000677726.1:ENST00000579461.2:ENST00000540698.6:ENST00000581230.5:ENST00000581693.5:ENST00000582326.2:ENST00000578491.2:ENST00000578804.5:ENST00000578400.5:ENST00000581697.5:ENST00000581806.5:ENST00000583239.6:ENST00000585060.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	32	2	1.59186	1.977985	2.36411	0.0408868	0.0206559	0.161534	0.110999
chr17	49053090	49053188	6625185	0	+	0.479592	(0.476,0.515]	chr17	646681	38	UTR3	UTR3:EXON_MRNA	IGF2BP1	ENSG00000159217.10	ENST00000290341.8	protein_coding	protein_coding	protein_coding	protein_coding	28	262	2	1.74495	1.9779550000000001	2.21096	0.00266853	3.06605e-4	0.0463688	0.015646
chr1	23745460	23745559	44597	0	+	0.292929	(0.28,0.32]	chr1	5388	8	INTRON	INTRON	ELOA	ENSG00000011007.13	ENST00000418390.7:ENST00000609199.2:ENST00000613537.5:ENST00000487554.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	64	2	1.94591	1.9779	2.00989	0.0427801	0.0228482	0.148082	0.125519
chr17	37353431	37353531	6762516	0	-	0.48	(0.476,0.515]	chr17	664970	77	INTRON	INTRON	ACACA	ENSG00000278540.5	ENST00000616317.5:ENST00000614428.4:ENST00000613146.4:ENST00000615229.4:ENST00000621960.1:ENST00000617548.1:ENST00000616352.4:ENST00000614789.4:ENST00000612007.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:non_stop_decay:nonsense_mediated_decay	9	85	2	1.36472	1.9779	2.59108	0.0467985	0.00196853	0.167716	0.0402283
chr16	81466901	81467001	6405218	0	+	0.43	(0.408,0.44]	chr16	615026	210	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8	protein_coding	protein_coding	protein_coding	protein_coding	10	100	2	1.49971	1.9778700000000002	2.45603	0.0298505	0.00171857	0.142135	0.0374701
chr15	65778855	65778955	6209662	0	-	0.44	(0.408,0.44]	chr15	592617	116	INTRON	INTRON	DENND4A	ENSG00000174485.16	ENST00000443035.8:ENST00000431932.6:ENST00000564674.5:ENST00000568515.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	18	171	2	1.3234	1.977855	2.63231	0.029363	8.07467e-5	0.128055	0.00750977
chr11	2957998	2958098	4891640	0	-	0.6	(0.57,1]	chr11	458298	2	SS5_PROX	SS5_PROX:INTRON	NAP1L4	ENSG00000205531.13	ENST00000620138.4:ENST00000380542.9:ENST00000526115.5:ENST00000492685.5:ENST00000528363.5:ENST00000483643.7:ENST00000528261.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	42	2	1.71424	1.9777	2.24116	0.0279017	0.00307807	0.137011	0.0496321
chr1	31060869	31060968	412851	0	-	0.181818	[0,0.28]	chr1	49748	9	INTRON	INTRON	PUM1	ENSG00000134644.16	ENST00000426105.7:ENST00000373747.7:ENST00000257075.9:ENST00000424085.6:ENST00000525843.5:ENST00000440538.6:ENST00000373741.8:ENST00000373742.6:ENST00000526215.5:ENST00000525948.5:ENST00000480602.1:ENST00000524516.1:ENST00000531867.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	148	2	1.8887	1.977685	2.06667	0.0123003	0.00909913	0.0971033	0.0809976
chr10	1161500	1161591	4380198	0	+	0.395604	(0.378,0.408]	chr10	404008	5	INTRON	INTRON	LINC00200	ENSG00000229205.5	ENST00000425630.2:ENST00000652683.1:ENST00000655745.1:ENST00000647993.1:ENST00000666348.1	lncRNA	lncRNA	lncRNA	lncRNA	4	44	2	1.89621	1.97759	2.05897	0.0488044	0.0339294	0.173377	0.134508
chr22	37871099	37871199	7511915	0	+	0.39	(0.378,0.408]	chr22	767198	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	EIF3L	ENSG00000100129.18	ENST00000412331.6:ENST00000624234.3:ENST00000381683.10:ENST00000476955.5:ENST00000652021.1:ENST00000477256.5:ENST00000406934.5:ENST00000464790.1:ENST00000482600.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	44	2	1.89621	1.97759	2.05897	0.0488044	0.0339294	0.173377	0.134508
chr5	79626283	79626383	2398870	0	+	0.5	(0.476,0.515]	chr5	231707	24	INTRON	INTRON	TENT2	ENSG00000164329.14	ENST00000423041.6:ENST00000504233.5:ENST00000453514.6:ENST00000428308.6:ENST00000296783.7	protein_coding	protein_coding	protein_coding	protein_coding	8	77	2	1.32871	1.9775800000000001	2.62645	0.0678032	0.00135678	0.184298	0.0339121
chr7	119779490	119779589	3629134	0	-	0.373737	(0.35,0.378]	chr7	337323	270	INTRON	INTRON	LINC02476	ENSG00000225546.6	ENST00000660268.1:ENST00000431071.5:ENST00000426413.2	lncRNA	lncRNA	lncRNA	lncRNA	27	268	2	1.52984	1.97754	2.42524	0.00591388	3.18196e-4	0.0694038	0.0164948
chr15	63591021	63591119	6042798	0	+	0.214286	[0,0.28]	chr15	575476	3	UTR3	UTR3:EXON_MRNA	USP3	ENSG00000140455.17	ENST00000540797.5:ENST00000380324.8:ENST00000558157.5:ENST00000559192.5:ENST00000268049.11:ENST00000559257.5:ENST00000538686.6:ENST00000559711.5:ENST00000559718.1:ENST00000560202.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	74	2	1.85666	1.977535	2.09841	0.0660997	0.0151026	0.181924	0.108435
chr20	35737967	35738067	7336514	0	-	0.51	(0.476,0.515]	chr20	747495	10	INTRON	INTRON	RBM39	ENSG00000131051.24	ENST00000253363.11:ENST00000639702.1:ENST00000656873.1:ENST00000463004.5:ENST00000361162.10:ENST00000461283.5:ENST00000403542.6:ENST00000338163.10:ENST00000528062.7:ENST00000429968.5:ENST00000444878.5:ENST00000665058.1:ENST00000374038.7:ENST00000412738.5:ENST00000434927.5:ENST00000425184.5:ENST00000481037.5:ENST00000455343.5:ENST00000416108.5:ENST00000426951.5:ENST00000477334.1:ENST00000442447.5:ENST00000449489.5:ENST00000433027.5:ENST00000487604.1:ENST00000453310.5:ENST00000416529.5:ENST00000397370.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	18	155	2	1.35649	1.977455	2.59842	0.0182462	4.33261e-4	0.11547	0.0190829
chr5	62318072	62318172	2362151	0	+	0.47	(0.44,0.476]	chr5	227725	58	INTRON	INTRON	KIF2A	ENSG00000068796.19	ENST00000401507.7:ENST00000407818.8:ENST00000674632.1:ENST00000674916.1:ENST00000676413.1:ENST00000676122.1:ENST00000674751.1:ENST00000514082.6:ENST00000675085.1:ENST00000504883.2:ENST00000381103.7:ENST00000676271.1:ENST00000512541.5:ENST00000674733.1:ENST00000506857.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	43	2	1.49356	1.977455	2.46135	0.0537505	0.0374637	0.180803	0.140008
chr20	47344855	47344955	7349393	0	-	0.53	(0.515,0.57]	chr20	749346	259	INTRON	INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000435836.5:ENST00000446894.5:ENST00000441977.1	protein_coding	protein_coding	protein_coding	protein_coding	12	100	2	1.9072	1.977425	2.04765	0.00558759	0.00329866	0.0678837	0.0511863
chr17	50979149	50979245	6795552	0	-	0.416667	(0.408,0.44]	chr17	670841	16	INTRON	INTRON	SPAG9	ENSG00000008294.22	ENST00000262013.12:ENST00000510283.5:ENST00000505279.5:ENST00000357122.8:ENST00000513746.6:ENST00000511312.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	116	2	1.93275	1.977415	2.02208	0.00938746	0.00251022	0.0817766	0.0465056
chr1	219199366	219199466	318635	0	+	0.31	(0.28,0.32]	chr1	36461	2	INTRON	INTRON	LYPLAL1	ENSG00000143353.12	ENST00000460522.5:ENST00000366927.3:ENST00000366928.10:ENST00000477938.5:ENST00000463964.5:ENST00000483635.5:ENST00000474379.5:ENST00000469590.5:ENST00000478794.5:ENST00000475724.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	14	161	2	1.80046	1.9773999999999998	2.15434	0.00818138	0.0046672	0.0768236	0.0630694
chr9	69715764	69715863	4263513	0	-	0.292929	(0.28,0.32]	chr9	392370	64	UTR3	UTR3:EXON_MRNA	PTAR1	ENSG00000188647.13	ENST00000377200.9:ENST00000340434.5	protein_coding	protein_coding	protein_coding	protein_coding	5	55	2	1.56118	1.977325	2.39347	0.0504457	0.0467152	0.1676	0.156383
chr2	197474815	197474914	968505	0	+	0.383838	(0.378,0.408]	chr2	104777	10	UTR3	UTR3:EXON_MRNA	COQ10B	ENSG00000115520.9	ENST00000263960.7	protein_coding	protein_coding	protein_coding	protein_coding	8	80	2	1.88928	1.977315	2.06535	0.0159849	0.00958693	0.101453	0.0866052
chr1	1574177	1574277	360316	0	-	0.82	(0.57,1]	chr1	41854	3	SS5_PROX	SS5_PROX:INTRON	SSU72	ENSG00000160075.12	ENST00000291386.4:ENST00000378725.3:ENST00000359060.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	22	2	1.9042	1.97723	2.05026	0.0476976	0.0321326	0.153019	0.145026
chr1	54356575	54356656	463262	0	-	0.641975	(0.57,1]	chr1	55783	3	EXON_LNCRNA	EXON_LNCRNA:INTRON	SSBP3	ENSG00000157216.16	ENST00000610401.5:ENST00000357475.9:ENST00000371319.8:ENST00000417664.7:ENST00000533946.6:ENST00000326956.12:ENST00000371320.8:ENST00000525990.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	22	2	1.9042	1.97723	2.05026	0.0476976	0.0321326	0.153019	0.145026
chr16	30311638	30311738	6473133	0	-	0.58	(0.57,1]	chr16	625713	53	INTRON	INTRON	SMG1P5	ENSG00000183604.15	ENST00000529428.5:ENST00000411546.4:ENST00000691460.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	4	22	2	1.9042	1.97723	2.05026	0.0476976	0.0321326	0.153019	0.145026
chr8	143590507	143590607	4083229	0	-	0.58	(0.57,1]	chr8	371001	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	EEF1D	ENSG00000104529.19	ENST00000317198.10:ENST00000532400.1:ENST00000529272.5:ENST00000395119.7:ENST00000533833.5:ENST00000528610.5:ENST00000442189.6:ENST00000618139.4:ENST00000526838.5:ENST00000531621.5:ENST00000529007.5:ENST00000524624.5:ENST00000530191.6:ENST00000534377.6:ENST00000529516.6:ENST00000419152.7:ENST00000531218.6:ENST00000533494.6:ENST00000534380.6:ENST00000524397.5:ENST00000526786.5:ENST00000530848.5:ENST00000534232.5:ENST00000533749.5:ENST00000525695.5:ENST00000526340.5:ENST00000532543.1:ENST00000531931.1:ENST00000423316.7:ENST00000526710.1:ENST00000531281.1:ENST00000532596.5:ENST00000524883.1:ENST00000531670.5:ENST00000528519.1:ENST00000529832.5:ENST00000530306.5:ENST00000530545.5:ENST00000525261.5:ENST00000534804.5:ENST00000524900.1:ENST00000526135.5:ENST00000531953.5:ENST00000526133.1:ENST00000534475.5:ENST00000528303.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	22	2	1.9042	1.97723	2.05026	0.0476976	0.0321326	0.153019	0.145026
chr2	55015218	55015318	1121054	0	-	0.43	(0.408,0.44]	chr2	120149	8	INTRON	INTRON	RTN4	ENSG00000115310.19	ENST00000404909.5:ENST00000394611.6:ENST00000317610.11:ENST00000357732.8:ENST00000337526.11:ENST00000357376.7:ENST00000405240.5:ENST00000438462.1	protein_coding	protein_coding	protein_coding	protein_coding	15	143	2	1.87904	1.9771550000000002	2.07527	0.011526	8.32507e-4	0.0889104	0.0263691
chr1	15888557	15888656	35073	0	+	0.464646	(0.44,0.476]	chr1	4272	115	INTRON	INTRON	SPEN	ENSG00000065526.12	ENST00000673875.1:ENST00000375759.8:ENST00000438066.1:ENST00000442985.1	protein_coding	protein_coding	protein_coding	protein_coding	5	50	2	1.92837	1.976975	2.02558	0.0363567	0.0222222	0.138959	0.124303
chr10	68360193	68360293	4638671	0	-	0.47	(0.44,0.476]	chr10	426535	44	INTRON	INTRON	RUFY2	ENSG00000204130.14	ENST00000466493.5:ENST00000484083.5:ENST00000463210.6:ENST00000602465.6:ENST00000388768.6:ENST00000265865.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	50	2	1.92837	1.976975	2.02558	0.0363567	0.0222222	0.138959	0.124303
chr4	16215232	16215317	2115705	0	-	0.447059	(0.44,0.476]	chr4	208994	3	INTRON	INTRON	TAPT1	ENSG00000169762.17	ENST00000405303.7:ENST00000505603.5:ENST00000513359.5:ENST00000508888.5:ENST00000510868.5:ENST00000505317.1:ENST00000511156.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	50	2	1.92837	1.976975	2.02558	0.0363567	0.0222222	0.138959	0.124303
chr17	61820948	61821048	6808508	0	-	0.4	(0.378,0.408]	chr17	672605	118	INTRON	INTRON	BRIP1	ENSG00000136492.10	ENST00000259008.7:ENST00000682755.1:ENST00000682453.1:ENST00000683039.1:ENST00000682989.1:ENST00000682589.1:ENST00000683235.1:ENST00000682477.1:ENST00000684584.1:ENST00000577598.5:ENST00000682066.1:ENST00000584322.2:ENST00000683381.1:ENST00000579028.2:ENST00000682611.1:ENST00000683692.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	53	2	1.77782	1.97695	2.17608	0.0388177	0.0218783	0.143072	0.123836
chr8	65840580	65840677	3961002	0	-	0.381443	(0.378,0.408]	chr8	363387	20	INTRON	INTRON	PDE7A	ENSG00000205268.11	ENST00000401827.8:ENST00000396642.7:ENST00000519231.5:ENST00000519626.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	53	2	1.77782	1.97695	2.17608	0.0388177	0.0218783	0.143072	0.123836
chr10	132541968	132542068	4537720	0	+	0.39	(0.378,0.408]	chr10	418936	34	INTRON	INTRON	INPP5A	ENSG00000068383.19	ENST00000368594.8:ENST00000368593.7:ENST00000423490.5	protein_coding	protein_coding	protein_coding	protein_coding	3	32	2	1.81685	1.9769400000000001	2.13703	0.0797592	0.0597868	0.19979	0.189982
chr11	93797919	93798019	4848891	0	+	0.38	(0.378,0.408]	chr11	452323	2	SS5_PROX	SS5_PROX:INTRON	MED17	ENSG00000042429.12	ENST00000640583.1:ENST00000640804.1:ENST00000638487.1:ENST00000639596.1:ENST00000251871.9:ENST00000640027.1:ENST00000639189.1:ENST00000525026.6:ENST00000533133.6:ENST00000639724.1:ENST00000639457.1:ENST00000640473.1:ENST00000640451.1:ENST00000507258.4:ENST00000640521.1:ENST00000638518.1:ENST00000638790.1:ENST00000639523.1:ENST00000640077.1:ENST00000529626.2:ENST00000533367.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	32	2	1.81685	1.9769400000000001	2.13703	0.0797592	0.0597868	0.19979	0.189982
chr13	110909817	110909917	5650597	0	-	0.4	(0.378,0.408]	chr13	538387	33	INTRON	INTRON	ANKRD10	ENSG00000088448.14	ENST00000267339.6:ENST00000489973.6:ENST00000310847.8:ENST00000465753.1:ENST00000494859.5:ENST00000460846.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	32	2	1.81685	1.9769400000000001	2.13703	0.0797592	0.0597868	0.19979	0.189982
chr19	52272984	52273083	7094714	0	+	0.393939	(0.378,0.408]	chr19	711251	30	INTRON	INTRON	ZNF766	ENSG00000196214.11	ENST00000439461.6:ENST00000593703.1:ENST00000599581.5:ENST00000601711.5	protein_coding	protein_coding	protein_coding	protein_coding	3	32	2	1.81685	1.9769400000000001	2.13703	0.0797592	0.0597868	0.19979	0.189982
chr8	125234172	125234272	3854915	0	+	0.39	(0.378,0.408]	chr8	355249	515	INTRON	INTRON	NSMCE2	ENSG00000156831.8	ENST00000517532.5:ENST00000287437.8:ENST00000522563.5:ENST00000517315.1	protein_coding	protein_coding	protein_coding	protein_coding	3	32	2	1.81685	1.9769400000000001	2.13703	0.0797592	0.0597868	0.19979	0.189982
chr1	100047415	100047515	171697	0	+	0.46	(0.44,0.476]	chr1	18596	38	INTRON	INTRON	ENSG00000283761:MFSD14A	ENSG00000283761.1:ENSG00000156875.14	ENST00000638792.1:ENST00000638968.1:ENST00000639040.1:ENST00000639037.1:ENST00000638779.1:ENST00000639171.1:ENST00000640238.1:ENST00000640357.1:ENST00000370152.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	50	2	1.81595	1.97687	2.13779	0.0317953	0.0264596	0.14477	0.122506
chr12	104310299	104310399	5210244	0	+	0.49	(0.476,0.515]	chr12	493217	2	SS5_PROX	SS5_PROX:INTRON	TXNRD1	ENSG00000198431.17	ENST00000525566.6:ENST00000526266.5:ENST00000503506.6:ENST00000526691.5:ENST00000531691.5:ENST00000526390.5:ENST00000531689.5:ENST00000529546.5:ENST00000529751.1:ENST00000528079.6:ENST00000526580.5:ENST00000529784.5:ENST00000524698.5:ENST00000527688.5:ENST00000527335.5:ENST00000526950.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	57	2	1.73688	1.9768249999999998	2.21677	0.0252731	0.0207026	0.133676	0.110999
chr14	30993371	30993471	5857543	0	-	0.3	(0.28,0.32]	chr14	556508	290	INTRON	INTRON	STRN3	ENSG00000196792.12	ENST00000355683.9:ENST00000357479.10:ENST00000555358.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	48	2	1.76378	1.9767649999999999	2.18975	0.0776042	0.0395495	0.196285	0.161534
chr1	11985754	11985853	26484	0	+	0.535354	(0.515,0.57]	chr1	3071	28	INTRON	INTRON	MFN2	ENSG00000116688.18	ENST00000444836.5:ENST00000674817.1:ENST00000675053.1:ENST00000675298.1:ENST00000675817.1:ENST00000675194.1:ENST00000676369.1:ENST00000412236.2:ENST00000675530.1:ENST00000674548.1:ENST00000675959.1:ENST00000675872.1:ENST00000676426.1:ENST00000674706.1:ENST00000674658.1:ENST00000674910.1:ENST00000675231.1:ENST00000490079.5:ENST00000484391.5:ENST00000497302.1:ENST00000235329.10:ENST00000676293.1:ENST00000675919.1:ENST00000675987.1:ENST00000675512.1:ENST00000675113.1:ENST00000675781.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	60	2	1.62814	1.9766750000000002	2.3252100000000002	0.035203	0.00525266	0.150193	0.0633615
chr19	11112685	11112777	7017061	0	+	0.456522	(0.44,0.476]	chr19	697464	7	INTRON	INTRON	LDLR	ENSG00000130164.14	ENST00000557933.5:ENST00000558518.6:ENST00000545707.5:ENST00000535915.5:ENST00000455727.6:ENST00000558013.5:ENST00000252444.9:ENST00000560467.1:ENST00000560173.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	52	2	1.94723	1.9766599999999999	2.00609	0.0360127	0.0227424	0.152355	0.117618
chr6	68824984	68825084	2888216	0	+	0.47	(0.44,0.476]	chr6	273730	1852	INTRON	INTRON	ADGRB3	ENSG00000135298.15	ENST00000370598.6:ENST00000684661.1:ENST00000546190.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	52	2	1.94723	1.9766599999999999	2.00609	0.0360127	0.0227424	0.152355	0.117618
chr7	121150342	121150442	3395272	0	+	0.38	(0.378,0.408]	chr7	317781	3	INTRON	INTRON	CPED1	ENSG00000106034.18	ENST00000310396.10:ENST00000450913.6:ENST00000423795.5:ENST00000466055.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	22	216	2	1.80254	1.976655	2.15077	0.00224774	0.00116535	0.0435552	0.0312127
chr16	21862789	21862887	6461869	0	-	0.408163	(0.378,0.408]	chr16	623459	47	INTRON	INTRON	NPIPB4	ENSG00000185864.18	ENST00000539318.5:ENST00000536041.5:ENST00000543449.1:ENST00000541674.5:ENST00000544693.5:ENST00000538859.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	88	2	1.49864	1.976645	2.45465	0.0302065	0.00381582	0.142764	0.0542786
chr16	96566	96664	6425334	0	-	0.479592	(0.476,0.515]	chr16	617328	29	INTRON	INTRON	NPRL3	ENSG00000103148.17	ENST00000611875.5:ENST00000622194.4:ENST00000621703.4:ENST00000399953.7:ENST00000464069.1:ENST00000473674.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	90	2	1.61324	1.9765700000000002	2.3399	0.026684	0.00275491	0.134419	0.0469265
chr19	5612059	5612151	7124250	0	-	0.434783	(0.408,0.44]	chr19	717019	3	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SAFB2	ENSG00000130254.12	ENST00000252542.9:ENST00000591123.5:ENST00000592599.5:ENST00000591120.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	43	2	1.43792	1.97642	2.51492	0.062843	0.0329839	0.196433	0.133816
chr2	53877155	53877255	1119587	0	-	0.44	(0.408,0.44]	chr2	119877	10	INTRON	INTRON	PSME4	ENSG00000068878.15	ENST00000404125.6:ENST00000389993.7:ENST00000476586.5:ENST00000466539.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	43	2	1.43792	1.97642	2.51492	0.062843	0.0329839	0.196433	0.133816
chr4	169606966	169607065	2297112	0	-	0.424242	(0.408,0.44]	chr4	222297	39	INTRON	INTRON	NEK1	ENSG00000137601.18	ENST00000687054.1:ENST00000507142.6:ENST00000686697.1:ENST00000688934.1:ENST00000685111.1:ENST00000687528.1:ENST00000687643.1:ENST00000439128.6:ENST00000511633.5:ENST00000510533.5:ENST00000512193.5:ENST00000693604.1:ENST00000692450.1:ENST00000687219.1:ENST00000693085.1:ENST00000690631.1:ENST00000688487.1:ENST00000688653.1:ENST00000692868.1:ENST00000692218.1:ENST00000505119.2:ENST00000510108.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	43	2	1.43792	1.97642	2.51492	0.062843	0.0329839	0.196433	0.133816
chr20	35733392	35733489	7336463	0	-	0.505155	(0.476,0.515]	chr20	747476	7	INTRON	INTRON	RBM39	ENSG00000131051.24	ENST00000253363.11:ENST00000639702.1:ENST00000656873.1:ENST00000463004.5:ENST00000361162.10:ENST00000461283.5:ENST00000403542.6:ENST00000338163.10:ENST00000528062.7:ENST00000429968.5:ENST00000444878.5:ENST00000665058.1:ENST00000374038.7:ENST00000412738.5:ENST00000434927.5:ENST00000425184.5:ENST00000481037.5:ENST00000455343.5:ENST00000416108.5:ENST00000426951.5:ENST00000477334.1:ENST00000442447.5:ENST00000449489.5:ENST00000433027.5:ENST00000487604.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	33	314	2	1.74893	1.976415	2.2039	0.00343227	9.4754e-5	0.0517761	0.00817032
chr22	21849428	21849528	7561204	0	-	0.3	(0.28,0.32]	chr22	773388	412	INTRON	INTRON	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	14	175	2	1.73613	1.97641	2.21669	0.00888124	0.00292956	0.0849778	0.0482364
chr10	101811385	101811480	4680905	0	-	0.294737	(0.28,0.32]	chr10	432012	7	INTRON	INTRON	OGA	ENSG00000198408.14	ENST00000439817.5:ENST00000361464.8:ENST00000357797.9:ENST00000370094.7:ENST00000429860.1	protein_coding	protein_coding	protein_coding	protein_coding	14	172	2	1.84751	1.97633	2.10515	0.0162455	0.00131237	0.101453	0.0333932
chr8	129572335	129572429	4061012	0	-	0.56383	(0.515,0.57]	chr8	369681	5	INTRON	INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1:ENST00000676273.1:ENST00000667643.1:ENST00000668791.1:ENST00000663716.1:ENST00000663572.1:ENST00000667962.1:ENST00000674877.1:ENST00000675316.1:ENST00000674656.1:ENST00000446592.7:ENST00000667341.1:ENST00000675186.1:ENST00000652971.1:ENST00000661447.1:ENST00000674863.1:ENST00000675498.1:ENST00000675527.1:ENST00000676108.1:ENST00000657647.1:ENST00000675589.1:ENST00000675913.1:ENST00000675109.1:ENST00000671632.1:ENST00000671311.1:ENST00000676099.1:ENST00000660652.1:ENST00000675522.1:ENST00000675044.1:ENST00000675435.1:ENST00000674639.1:ENST00000676069.1:ENST00000675532.1:ENST00000674762.1:ENST00000523151.6:ENST00000675948.1:ENST00000665364.1:ENST00000657251.1:ENST00000675166.1:ENST00000674883.1:ENST00000675867.1:ENST00000674580.1:ENST00000675393.1:ENST00000520048.1:ENST00000674906.1:ENST00000676030.1:ENST00000670588.1:ENST00000675072.1:ENST00000664936.1:ENST00000652914.1:ENST00000657069.1:ENST00000674882.1	lncRNA	lncRNA	lncRNA	lncRNA	7	59	2	1.79385	1.9762549999999999	2.15866	0.0201222	0.0100547	0.121243	0.0848452
chr2	144403715	144403815	1240621	0	-	0.29	(0.28,0.32]	chr2	131672	4	SS5_PROX	SS5_PROX:INTRON	ZEB2	ENSG00000169554.23	ENST00000636471.1:ENST00000627532.3:ENST00000638128.1:ENST00000637304.1:ENST00000636179.1:ENST00000636820.1:ENST00000637045.1:ENST00000636413.1:ENST00000638007.1:ENST00000638087.1:ENST00000419938.5:ENST00000409487.7:ENST00000440875.6:ENST00000636732.2:ENST00000636026.2:ENST00000675069.1:ENST00000689298.1:ENST00000539609.7:ENST00000558170.6:ENST00000303660.8:ENST00000427902.5:ENST00000637267.2:ENST00000392861.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	53	2	1.76293	1.9762149999999998	2.1895	0.0766478	0.0227063	0.196164	0.124921
chr20	35403065	35403164	7335120	0	-	0.313131	(0.28,0.32]	chr20	747197	85	INTRON	INTRON	UQCC1	ENSG00000101019.22	ENST00000374380.6:ENST00000374394.7:ENST00000374384.6:ENST00000359226.6:ENST00000349714.9:ENST00000457259.5:ENST00000374385.10:ENST00000453855.5:ENST00000424405.5:ENST00000443429.5:ENST00000438533.5:ENST00000397554.5:ENST00000491125.5:ENST00000491040.5:ENST00000397553.6:ENST00000495752.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	53	2	1.76293	1.9762149999999998	2.1895	0.0766478	0.0227063	0.196164	0.124921
chrX	121211130	121211230	7715301	0	+	0.3	(0.28,0.32]	chrX	789390	249	INTRON	INTRON	ENSG00000286163	ENSG00000286163.1	ENST00000651788.1	lncRNA	lncRNA	lncRNA	lncRNA	4	53	2	1.76293	1.9762149999999998	2.1895	0.0766478	0.0227063	0.196164	0.124921
chr22	21513929	21514029	7560230	0	-	0.62	(0.57,1]	chr22	773319	4	SS5_PROX	SS5_PROX:INTRON	PI4KAP2	ENSG00000183506.17	ENST00000450651.5:ENST00000467443.5:ENST00000479693.1:ENST00000476537.1:ENST00000491562.5	transcribed_unitary_pseudogene	retained_intron	transcribed_unitary_pseudogene	retained_intron:processed_transcript	9	47	2	1.64415	1.97614	2.30813	0.0342575	0.00113374	0.135558	0.0308663
chr19	34445916	34446015	7053302	0	+	0.393939	(0.378,0.408]	chr19	703531	4	INTRON	INTRON	UBA2	ENSG00000126261.13	ENST00000586313.1:ENST00000590048.6:ENST00000246548.9:ENST00000439527.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	108	2	1.32783	1.97612	2.62441	0.0481997	5.61983e-4	0.153122	0.0216479
chr22	20104677	20104777	7478483	0	+	0.48	(0.476,0.515]	chr22	762741	95	INTRON	INTRON	DGCR8	ENSG00000128191.16	ENST00000383024.6:ENST00000351989.8:ENST00000495826.5:ENST00000407755.1:ENST00000498171.5:ENST00000491892.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	69	2	1.78917	1.976115	2.16306	0.022887	0.00973468	0.118056	0.0877284
chr1	90972552	90972652	502031	0	-	0.35	(0.32,0.35]	chr1	59492	309	INTRON	INTRON	ZNF644	ENSG00000122482.22	ENST00000370440.5:ENST00000337393.10:ENST00000347275.9:ENST00000361321.5:ENST00000467231.5:ENST00000498303.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	56	2	1.37958	1.976105	2.57263	0.0577841	0.0312297	0.188484	0.13151
chr9	111392181	111392267	4314339	0	-	0.5	(0.476,0.515]	chr9	396691	4	SS3_PROX	SS3_PROX:INTRON	ECPAS	ENSG00000136813.15	ENST00000684092.1:ENST00000338205.9:ENST00000259335.8	protein_coding	protein_coding	protein_coding	protein_coding	7	65	2	1.84346	1.9761000000000002	2.10874	0.0285608	0.0114152	0.12666	0.095586
chr1	113976284	113976383	192288	0	+	0.383838	(0.378,0.408]	chr1	21240	29	UTR3	UTR3:EXON_MRNA	HIPK1	ENSG00000163349.22	ENST00000426820.7:ENST00000626993.2:ENST00000369558.5:ENST00000340480.8:ENST00000361587.3	protein_coding	protein_coding	protein_coding	protein_coding	8	83	2	1.9714	1.9761	1.9808	0.0123757	0.0109363	0.0924799	0.0916369
chr5	69649067	69649166	2637224	0	-	0.323232	(0.32,0.35]	chr5	250516	26	INTRON	INTRON	GUSBP3	ENSG00000253203.6	ENST00000513408.6:ENST00000509348.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	7	81	2	1.96288	1.975985	1.98909	0.0239991	0.0108865	0.119664	0.0923273
chrX	151972564	151972660	7908619	0	-	0.479167	(0.476,0.515]	chrX	804815	14	EXON_MRNA	EXON_MRNA:INTRON	GABRE	ENSG00000102287.19	ENST00000370328.4:ENST00000441219.5:ENST00000491339.1:ENST00000417300.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	60	568	2	1.94077	1.9759600000000002	2.01115	4.04924e-4	1.85081e-4	0.0185763	0.0118667
chr21	10477789	10477887	7368780	0	+	0.459184	(0.44,0.476]	chr21	752004	37	INTRON	INTRON	BAGE2	ENSG00000187172.15	ENST00000470054.5:ENST00000496773.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	6	58	2	1.43625	1.975895	2.51554	0.063142	0.00777207	0.197183	0.0757731
chr7	149484232	149484331	3671698	0	-	0.313131	(0.28,0.32]	chr7	340777	61	INTRON	INTRON	ZNF746	ENSG00000181220.18	ENST00000644635.1:ENST00000340622.8:ENST00000458143.7:ENST00000685153.1	protein_coding	protein_coding	protein_coding	protein_coding	5	64	2	1.81152	1.9757699999999998	2.14002	0.034446	0.0304107	0.147767	0.130461
chr19	55657103	55657200	7101534	0	+	0.587629	(0.57,1]	chr19	712494	16	INTRON	INTRON	U2AF2	ENSG00000063244.13	ENST00000450554.6:ENST00000308924.9:ENST00000588850.5:ENST00000587196.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	36	2	1.87172	1.9756399999999998	2.07956	0.0152293	0.013114	0.0998629	0.0996307
chr12	76063580	76063680	5370007	0	-	0.46	(0.44,0.476]	chr12	512308	21	INTRON	INTRON	NAP1L1	ENSG00000187109.15	ENST00000618691.5:ENST00000552056.5:ENST00000393263.7:ENST00000431879.7:ENST00000552147.5:ENST00000547773.5:ENST00000544816.5:ENST00000542344.5:ENST00000535020.6:ENST00000549596.5:ENST00000552342.5:ENST00000547529.6:ENST00000548044.5:ENST00000550934.5:ENST00000551992.5:ENST00000548273.5:ENST00000551600.5:ENST00000547704.5:ENST00000551524.5:ENST00000549988.5:ENST00000547479.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	96	2	1.96975	1.975615	1.98148	0.0123514	0.00431586	0.0914865	0.0599409
chr15	66583647	66583746	6050797	0	+	0.333333	(0.32,0.35]	chr15	576221	10	INTRON	INTRON	LINC01169	ENSG00000259471.1	ENST00000558797.1	lncRNA	lncRNA	lncRNA	lncRNA	14	159	2	1.77966	1.97552	2.17138	0.00678922	0.0030215	0.074388	0.0493883
chr10	73060669	73060768	4647479	0	-	0.383838	(0.378,0.408]	chr10	427530	67	INTRON	INTRON	P4HA1	ENSG00000122884.13	ENST00000394890.7:ENST00000307116.6:ENST00000373008.6:ENST00000440381.5:ENST00000263556.3	protein_coding	protein_coding	protein_coding	protein_coding	8	74	2	1.73859	1.975485	2.21238	0.0218124	0.0123927	0.11491	0.0973643
chr12	116180182	116180280	5424572	0	-	0.408163	(0.378,0.408]	chr12	518267	50	INTRON	INTRON	MED13L:ENSG00000258337	ENSG00000123066.9:ENSG00000258337.1	ENST00000281928.9:ENST00000650226.1:ENST00000548743.2:ENST00000647567.1:ENST00000551197.2:ENST00000549373.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	7	72	2	1.86598	1.97539	2.0848	0.0300232	0.00697927	0.129138	0.0754576
chr7	100350310	100350387	3364484	0	+	0.558442	(0.515,0.57]	chr7	314653	3	SS5_PROX	SS5_PROX:INTRON	STAG3L5P:STAG3L5P-PVRIG2P-PILRB	ENSG00000242294.6:ENSG00000272752.6	ENST00000473757.5:ENST00000470714.5:ENST00000310771.8:ENST00000483329.6:ENST00000444874.5	lncRNA	retained_intron	lncRNA:transcribed_unprocessed_pseudogene	retained_intron:lncRNA	11	90	2	1.40421	1.97538	2.54655	0.0324924	8.595e-4	0.145164	0.0267428
chr17	32215004	32215103	6597578	0	+	0.50505	(0.476,0.515]	chr17	641842	34	INTRON	INTRON	RHOT1	ENSG00000126858.19	ENST00000333942.10:ENST00000358365.7:ENST00000583994.5:ENST00000545287.7:ENST00000354266.7:ENST00000581031.5:ENST00000578205.5:ENST00000394692.6:ENST00000580392.5:ENST00000584692.1:ENST00000652713.1:ENST00000584852.1:ENST00000582586.1:ENST00000646284.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	51	2	1.88582	1.975365	2.06491	0.0304733	0.0273268	0.143385	0.123904
chr7	152414538	152414638	3681079	0	-	0.27	[0,0.28]	chr7	341660	555	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000682301.1:ENST00000452749.2:ENST00000680867.1:ENST00000683800.1:ENST00000684278.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	102	2	1.49535	1.97533	2.45531	0.0670881	0.00415834	0.183051	0.0590857
chr1	96787148	96787248	168606	0	+	0.51	(0.476,0.515]	chr1	18249	15	INTRON	INTRON	PTBP2	ENSG00000117569.19	ENST00000482253.5:ENST00000675735.1:ENST00000609116.5:ENST00000674951.1:ENST00000675080.1:ENST00000426398.3:ENST00000370197.5:ENST00000370198.5:ENST00000476419.5:ENST00000676292.1:ENST00000676096.1:ENST00000675365.1:ENST00000674579.1:ENST00000675401.1:ENST00000459735.5:ENST00000476783.5:ENST00000492905.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	78	2	1.78749	1.9752750000000001	2.16306	0.0157618	0.00973468	0.101453	0.0877284
chr1	234407955	234408054	660701	0	-	0.393939	(0.378,0.408]	chr1	78136	1	INTRON	INTRON	TARBP1	ENSG00000059588.10	ENST00000040877.2:ENST00000481183.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	72	2	1.52219	1.9752299999999998	2.42827	0.0531838	0.00336942	0.162538	0.0532965
chr1	9850326	9850423	375468	0	-	0.412371	(0.408,0.44]	chr1	43792	22	UTR3	UTR3:EXON_MRNA	CTNNBIP1	ENSG00000178585.15	ENST00000377263.6:ENST00000400904.7	protein_coding	protein_coding	protein_coding	protein_coding	4	42	2	1.94273	1.975205	2.00768	0.0456237	0.035843	0.152216	0.149888
chr21	7431637	7431737	7365619	0	+	0.41	(0.408,0.44]	chr21	751728	4	INTRON	INTRON	ENSG00000276077	ENSG00000276077.4	ENST00000617062.4:ENST00000625096.3:ENST00000624791.1:ENST00000624907.3:ENST00000624461.3:ENST00000625115.1	lncRNA	lncRNA	lncRNA	lncRNA	4	42	2	1.94273	1.975205	2.00768	0.0456237	0.035843	0.152216	0.149888
chr22	21569676	21569776	7481724	0	+	0.41	(0.408,0.44]	chr22	763232	9	INTRON	INTRON	UBE2L3	ENSG00000185651.16	ENST00000458578.6:ENST00000545681.2:ENST00000696046.1:ENST00000342192.9:ENST00000496722.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	42	2	1.94273	1.975205	2.00768	0.0456237	0.035843	0.152216	0.149888
chr15	41374527	41374625	6005204	0	+	0.510204	(0.476,0.515]	chr15	571351	25	INTRON	INTRON	NUSAP1	ENSG00000137804.14	ENST00000668273.1:ENST00000260359.10:ENST00000558123.5:ENST00000414849.6:ENST00000450592.6:ENST00000559596.6:ENST00000560747.5:ENST00000560177.5:ENST00000557840.5:ENST00000560898.5:ENST00000560318.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	60	2	1.93059	1.97506	2.01953	0.023762	0.0163662	0.118822	0.109586
chr21	38110520	38110620	7463991	0	-	0.27	[0,0.28]	chr21	760303	108	INTRON	INTRON	DSCR4	ENSG00000184029.9	ENST00000398948.5:ENST00000328264.7:ENST00000482032.1	lncRNA	lncRNA	lncRNA	lncRNA	7	95	2	1.81439	1.975045	2.1357	0.0338175	0.0160379	0.134476	0.109464
chr14	103691465	103691563	5828289	0	+	0.459184	(0.44,0.476]	chr14	553132	35	INTRON	INTRON	KLC1	ENSG00000126214.22	ENST00000348520.10:ENST00000334553.11:ENST00000555836.5:ENST00000347839.10:ENST00000452929.6:ENST00000554280.5:ENST00000557450.5:ENST00000554228.5:ENST00000634686.1:ENST00000246489.11:ENST00000537046.6:ENST00000535194.2:ENST00000538504.6:ENST00000557143.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	96	2	1.62554	1.975025	2.32451	0.0212701	0.00241361	0.113328	0.0453973
chr16	8078222	8078322	6441291	0	-	0.46	(0.44,0.476]	chr16	620351	706	INTRON	INTRON	ENSG00000260289	ENSG00000260289.2	ENST00000670665.1:ENST00000654046.1:ENST00000567103.2	lncRNA	lncRNA	lncRNA	lncRNA	7	69	2	1.68545	1.974985	2.26452	0.0322071	0.00654074	0.132543	0.0735539
chr10	113915800	113915900	4527467	0	+	0.42	(0.408,0.44]	chr10	417479	74	UTR3	UTR3:EXON_MRNA	NHLRC2	ENSG00000196865.4	ENST00000369301.3	protein_coding	protein_coding	protein_coding	protein_coding	6	58	2	1.44993	1.9748800000000002	2.49983	0.0638951	0.00713527	0.177824	0.0756118
chr1	28508905	28508996	57202	0	+	0.384615	(0.378,0.408]	chr1	7388	1	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	RCC1:SNHG3	ENSG00000180198.17:ENSG00000242125.3	ENST00000398958.6:ENST00000649185.1:ENST00000413987.1:ENST00000427469.5:ENST00000683442.1:ENST00000434290.6:ENST00000373833.10:ENST00000437681.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	260	2605	2	1.97433	1.97486	1.97539	1.76512e-4	6.45215e-5	0.01216	0.0066647
chr17	82269008	82269107	6852790	0	-	0.484848	(0.476,0.515]	chr17	679167	16	INTRON	INTRON	CSNK1D	ENSG00000141551.15	ENST00000398519.9:ENST00000314028.11:ENST00000581241.5:ENST00000392334.6:ENST00000403276.7:ENST00000582844.5:ENST00000580446.1:ENST00000581660.5:ENST00000578194.5:ENST00000579316.5:ENST00000584472.5:ENST00000585026.1:ENST00000579308.1:ENST00000581655.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	106	2	1.76068	1.97471	2.18874	0.0127588	0.00255859	0.0926667	0.0466761
chr10	68652794	68652894	4441814	0	+	0.38	(0.378,0.408]	chr10	409545	2	SS5_PROX	SS5_PROX:INTRON	TET1	ENSG00000138336.9	ENST00000373644.5	protein_coding	protein_coding	protein_coding	protein_coding	5	52	2	1.8374	1.9746700000000001	2.11194	0.0299228	0.0292534	0.142135	0.128055
chr7	5220714	5220813	3272276	0	+	0.393939	(0.378,0.408]	chr7	304127	18	INTRON	INTRON	WIPI2	ENSG00000157954.15	ENST00000401525.7:ENST00000288828.9:ENST00000404704.7:ENST00000466014.5:ENST00000382384.6:ENST00000484262.1:ENST00000465102.5:ENST00000480238.5:ENST00000488359.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	52	2	1.8374	1.9746700000000001	2.11194	0.0299228	0.0292534	0.142135	0.128055
chr15	101294996	101295096	6270051	0	-	0.74	(0.57,1]	chr15	598041	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	SNRPA1	ENSG00000131876.18	ENST00000254193.11:ENST00000558036.5:ENST00000559309.5:ENST00000394082.8:ENST00000540017.6:ENST00000560383.5:ENST00000560856.5:ENST00000558020.1:ENST00000561187.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	39	2	1.28607	1.97456	2.66305	0.0504184	0.00327879	0.174922	0.0509077
chr11	86030577	86030675	5014456	0	-	0.326531	(0.32,0.35]	chr11	473014	39	INTRON	INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000630913.2:ENST00000528398.5:ENST00000356360.9:ENST00000534412.5:ENST00000531558.1:ENST00000531930.5:ENST00000532041.5:ENST00000525162.5:ENST00000528256.1:ENST00000528411.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	88	2	1.41804	1.974555	2.53107	0.0337299	0.00860484	0.146709	0.0784134
chr19	11603410	11603509	7018077	0	+	0.434343	(0.408,0.44]	chr19	697688	54	INTRON	INTRON	ZNF627	ENSG00000198551.10	ENST00000593279.5:ENST00000585493.5:ENST00000587939.5:ENST00000361113.10:ENST00000588174.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	78	2	1.92319	1.97455	2.02591	0.0247322	0.00531945	0.12011	0.0660391
chr22	21432006	21432105	7481319	0	+	0.373737	(0.35,0.378]	chr22	763209	109	INTRON	INTRON	HIC2	ENSG00000169635.10	ENST00000407464.7:ENST00000407598.2	protein_coding	protein_coding	protein_coding	protein_coding	9	97	2	1.81752	1.974415	2.13131	0.0130467	0.00741515	0.0994973	0.0744307
chr16	85476099	85476199	6414591	0	+	0.52	(0.515,0.57]	chr16	615465	1168	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	11	100	2	1.7407	1.974385	2.20807	0.0242347	0.00102388	0.130613	0.029231300000000002
chr11	66641387	66641484	4811057	0	+	0.340206	(0.32,0.35]	chr11	447893	3	INTRON	INTRON	RBM14-RBM4:RBM4	ENSG00000248643.5:ENSG00000173933.21	ENST00000412278.2:ENST00000421355.1:ENST00000500635.2:ENST00000396053.9:ENST00000408993.6:ENST00000578778.5:ENST00000398692.8:ENST00000310092.12:ENST00000510173.6:ENST00000528039.5:ENST00000506523.6:ENST00000530235.1:ENST00000409406.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	104	2	1.79633	1.97438	2.15243	0.0177594	0.0057293	0.105629	0.0681402
chr20	3921659	3921758	7227230	0	+	0.363636	(0.35,0.378]	chr20	734522	25	INTRON	INTRON	PANK2	ENSG00000125779.24	ENST00000497424.5:ENST00000316562.9:ENST00000610179.7:ENST00000643504.2:ENST00000336066.8:ENST00000646394.1:ENST00000621507.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	15	161	2	1.79256	1.97435	2.15614	0.00602609	0.00208752	0.0700813	0.0411885
chr12	132678219	132678285	5449094	0	-	0.272727	[0,0.28]	chr12	521852	1	SS5_PROX	SS5_PROX:INTRON	POLE	ENSG00000177084.18	ENST00000320574.10:ENST00000672742.1:ENST00000537064.5:ENST00000535270.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	61	2	1.94204	1.974265	2.00649	0.0544139	0.040391	0.164972	0.161534
chr5	113577295	113577395	2454515	0	+	0.26	[0,0.28]	chr5	235257	91	INTRON	INTRON	YTHDC2	ENSG00000047188.16	ENST00000161863.9:ENST00000506333.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	61	2	1.94204	1.974265	2.00649	0.0544139	0.040391	0.164972	0.161534
chr3	152300567	152300667	1535303	0	+	0.38	(0.378,0.408]	chr3	159991	2	SS5_PROX	SS5_PROX:INTRON	MBNL1	ENSG00000152601.18	ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000461436.1:ENST00000495875.6:ENST00000324210.10:ENST00000493459.5:ENST00000459747.1:ENST00000460591.5:ENST00000545754.5:ENST00000357472.7:ENST00000324196.9:ENST00000498502.5:ENST00000463374.5:ENST00000485910.5:ENST00000465907.6:ENST00000492948.5:ENST00000485509.5:ENST00000464596.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	16	140	2	1.48421	1.974185	2.46416	0.0118495	0.00175593	0.0962115	0.0376652
chr10	125075606	125075706	4713485	0	-	0.32	(0.28,0.32]	chr10	434897	361	INTRON	INTRON	CTBP2	ENSG00000175029.17	ENST00000337195.9:ENST00000411419.6:ENST00000494626.6:ENST00000531469.5:ENST00000460976.5:ENST00000476817.1:ENST00000530884.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	53	2	1.86684	1.9741650000000002	2.08149	0.0605813	0.031124	0.171122	0.143644
chr3	9410720	9410819	1359015	0	+	0.282828	(0.28,0.32]	chr3	142655	124	INTRON	INTRON	SETD5	ENSG00000168137.20	ENST00000402198.7:ENST00000431285.5:ENST00000683012.1:ENST00000463180.5:ENST00000478475.5:ENST00000415650.5:ENST00000682536.1:ENST00000663774.1:ENST00000665872.1:ENST00000666307.1:ENST00000693430.1:ENST00000691925.1:ENST00000684606.1:ENST00000691175.1:ENST00000688835.1:ENST00000683262.1:ENST00000443339.5:ENST00000406341.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	82	2	1.38068	1.974165	2.56765	0.0590236	0.00835086	0.189982	0.0774402
chr2	167876470	167876569	1258566	0	-	0.333333	(0.32,0.35]	chr2	133334	61	INTRON	INTRON	B3GALT1-AS1	ENSG00000235335.3	ENST00000430546.2:ENST00000657553.1:ENST00000670221.1:ENST00000436982.2	lncRNA	lncRNA	lncRNA	lncRNA	12	137	2	1.74978	1.9741499999999998	2.19852	0.0157772	0.00179437	0.101453	0.0392772
chr1	247136946	247137046	683517	0	-	0.35	(0.32,0.35]	chr1	80146	127	INTRON	INTRON	ZNF124	ENSG00000196418.13	ENST00000472531.5:ENST00000476312.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	69	2	1.64353	1.974145	2.30476	0.0398512	0.0151817	0.143072	0.108535
chr12	31321949	31322049	5302814	0	-	0.38	(0.378,0.408]	chr12	504668	165	INTRON	INTRON	SINHCAF	ENSG00000139146.14	ENST00000337682.9:ENST00000539409.5:ENST00000454658.6:ENST00000542983.1:ENST00000539004.5:ENST00000543615.1:ENST00000536836.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	76	2	1.48475	1.9741	2.46345	0.0353336	0.00827342	0.137535	0.0813266
chr8	102350686	102350786	4012131	0	-	0.32	(0.28,0.32]	chr8	367218	32	INTRON	INTRON	UBR5	ENSG00000104517.13	ENST00000520539.6:ENST00000220959.8:ENST00000521922.5	protein_coding	protein_coding	protein_coding	protein_coding	12	140	2	1.94822	1.97405	1.99988	0.0228757	0.00282505	0.118056	0.0491244
chr19	57864718	57864818	7106185	0	+	0.33	(0.32,0.35]	chr19	713245	47	UTR3	UTR3:EXON_MRNA	ZNF587	ENSG00000198466.12	ENST00000339656.8	protein_coding	protein_coding	protein_coding	protein_coding	8	90	2	1.85014	1.9740349999999998	2.09793	0.0156788	0.0119731	0.101453	0.0962115
chr1	226969901	226970000	328862	0	+	0.363636	(0.35,0.378]	chr1	37923	38	INTRON	INTRON	COQ8A	ENSG00000163050.18	ENST00000366778.5:ENST00000366777.4:ENST00000478406.5:ENST00000489044.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	66	2	1.70607	1.974015	2.24196	0.0482819	0.00744693	0.153283	0.0772645
chr4	126667274	126667374	2237382	0	-	0.34	(0.32,0.35]	chr4	219023	2018	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	12	132	2	1.8903	1.9739	2.0575	0.0298043	0.00144543	0.129138	0.0348657
chr1	84651682	84651782	496369	0	-	0.4	(0.378,0.408]	chr1	58826	4	SS5_PROX	SS5_PROX:INTRON	SSX2IP	ENSG00000117155.17	ENST00000342203.8:ENST00000437941.6:ENST00000481102.5:ENST00000476905.6:ENST00000605755.5:ENST00000603677.1:ENST00000490476.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	41	2	1.58349	1.9738850000000001	2.36428	0.0653091	0.0441088	0.180158	0.162255
chr7	101920902	101921002	3367401	0	+	0.53	(0.515,0.57]	chr7	315225	43	INTRON	INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000497815.5:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000558469.5:ENST00000560541.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	11	91	2	1.86103	1.973825	2.08662	0.00757303	0.00375149	0.0749063	0.0562562
chr1	30972761	30972860	411953	0	-	0.484848	(0.476,0.515]	chr1	49679	39	INTRON	INTRON	PUM1	ENSG00000134644.16	ENST00000426105.7:ENST00000373747.7:ENST00000257075.9:ENST00000424085.6:ENST00000525843.5:ENST00000440538.6:ENST00000498419.5:ENST00000373741.8:ENST00000373742.6:ENST00000471894.1:ENST00000490546.1:ENST00000532678.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	42	2	1.8388	1.97377	2.10874	0.0564473	0.0285608	0.184423	0.12666
chr16	53069271	53069371	6350861	0	+	0.48	(0.476,0.515]	chr16	609666	138	INTRON	INTRON	CHD9	ENSG00000177200.18	ENST00000447540.6:ENST00000566029.5:ENST00000615216.4:ENST00000561869.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	42	2	1.8388	1.97377	2.10874	0.0564473	0.0285608	0.184423	0.12666
chr3	180608338	180608428	1568053	0	+	0.211111	[0,0.28]	chr3	162330	7	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TTC14	ENSG00000163728.11	ENST00000296015.9:ENST00000412756.6:ENST00000465065.5:ENST00000382584.8:ENST00000470669.5:ENST00000465625.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	16	227	2	1.5461	1.973725	2.40135	0.0244972	6.82075e-4	0.12011	0.0237698
chr2	235562329	235562429	1042020	0	+	0.57	(0.515,0.57]	chr2	111222	374	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1:ENST00000402604.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	82	2	1.65501	1.97362	2.29223	0.016231	0.00290031	0.109464	0.047789
chr20	50088041	50088140	7353702	0	-	0.282828	(0.28,0.32]	chr20	749863	34	INTRON	INTRON	UBE2V1	ENSG00000244687.13	ENST00000340309.7:ENST00000371677.7:ENST00000415862.6:ENST00000557021.5:ENST00000617119.4:ENST00000625172.3:ENST00000396059.7:ENST00000371674.8:ENST00000371657.9:ENST00000483534.5:ENST00000492371.6:ENST00000486653.5:ENST00000490555.1:ENST00000493090.5:ENST00000467839.5:ENST00000472923.5:ENST00000432266.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	89	2	1.79721	1.9736099999999999	2.15001	0.0408024	0.00621783	0.1451	0.0717536
chr3	196076035	196076123	1897497	0	-	0.545455	(0.515,0.57]	chr3	189984	3	INTRON	INTRON	TFRC	ENSG00000072274.13	ENST00000420415.5:ENST00000360110.9:ENST00000392396.7:ENST00000421258.1:ENST00000464011.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	33	2	1.81744	1.973575	2.12971	0.0757903	0.031028	0.194427	0.143457
chr12	93502017	93502117	5189605	0	+	0.46	(0.44,0.476]	chr12	490864	9	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	MRPL42	ENSG00000198015.14	ENST00000549982.6:ENST00000552217.6:ENST00000393128.8:ENST00000358678.7:ENST00000549561.6:ENST00000552938.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	50	2	1.75627	1.973525	2.19078	0.0380723	0.0226089	0.157702	0.117489
chr17	75151918	75152015	6836065	0	-	0.412371	(0.408,0.44]	chr17	675489	24	INTRON	INTRON	JPT1	ENSG00000189159.16	ENST00000409753.8:ENST00000476258.5:ENST00000482348.5:ENST00000304834.11:ENST00000356033.8:ENST00000470924.5:ENST00000481647.5:ENST00000580380.1:ENST00000581874.1:ENST00000584079.5:ENST00000465454.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	71	2	1.91269	1.9735	2.03431	0.0154896	0.0153219	0.108998	0.100173
chr19	11115593	11115693	7017093	0	+	0.5	(0.476,0.515]	chr19	697474	1	SS3_PROX	SS3_PROX:INTRON	LDLR	ENSG00000130164.14	ENST00000557933.5:ENST00000558518.6:ENST00000545707.5:ENST00000535915.5:ENST00000455727.6:ENST00000558013.5:ENST00000252444.9:ENST00000559340.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	85	2	1.65322	1.973405	2.29359	0.0190363	0.00584957	0.108861	0.0689807
chr7	148730981	148731080	3444011	0	+	0.313131	(0.28,0.32]	chr7	321178	3	INTRON	INTRON	CUL1	ENSG00000055130.18	ENST00000409469.5:ENST00000662716.1:ENST00000665936.1:ENST00000663044.1:ENST00000602748.5:ENST00000663835.1:ENST00000655324.1:ENST00000662132.1:ENST00000325222.9:ENST00000656001.1:ENST00000666124.1:ENST00000671421.1:ENST00000671397.1:ENST00000662670.1:ENST00000660240.1:ENST00000662975.1:ENST00000660013.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	89	2	1.79739	1.973405	2.14942	0.0224995	0.0143412	0.124921	0.0966737
chr1	748213	748312	357449	0	-	0.343434	(0.32,0.35]	chr1	41168	10	INTRON	INTRON	ENSG00000230021:ENSG00000228327	ENSG00000230021.10:ENSG00000228327.4	ENST00000634337.2:ENST00000635509.2:ENST00000506640.2	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene:transcribed_unprocessed_pseudogene	processed_transcript	7	81	2	1.88141	1.97337	2.06533	0.0174225	0.0161424	0.109464	0.10453
chr15	72517566	72517666	6059594	0	+	0.47	(0.44,0.476]	chr15	576859	1	SS3_PROX	SS3_PROX:INTRON	ARIH1	ENSG00000166233.15	ENST00000379887.9:ENST00000570085.5:ENST00000564062.1:ENST00000567762.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	50	2	1.55662	1.973325	2.39003	0.0688347	0.0106488	0.184298	0.0915714
chr14	21226239	21226339	5834725	0	-	0.52	(0.515,0.57]	chr14	554424	128	INTRON	INTRON	HNRNPC	ENSG00000092199.19	ENST00000336053.10:ENST00000553300.6:ENST00000554969.5:ENST00000556142.5:ENST00000554455.5:ENST00000430246.6:ENST00000553753.5:ENST00000555309.5:ENST00000555914.5:ENST00000557442.5:ENST00000556628.5:ENST00000556513.5:ENST00000555883.5:ENST00000557201.5:ENST00000556897.5:ENST00000420743.6:ENST00000557157.5:ENST00000554539.5:ENST00000554383.5:ENST00000554417.1:ENST00000555215.5:ENST00000555137.5:ENST00000554891.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	100	2	1.61321	1.973295	2.33338	0.0202182	6.41714e-4	0.109913	0.0228958
chr3	43707553	43707653	1410346	0	+	0.34	(0.32,0.35]	chr3	147939	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	ABHD5	ENSG00000011198.10	ENST00000643520.1:ENST00000458276.7:ENST00000649763.1:ENST00000643140.1:ENST00000643500.1:ENST00000644371.2:ENST00000013894.3:ENST00000646378.1:ENST00000643477.1:ENST00000646799.1:ENST00000454293.2:ENST00000642351.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	24	271	2	1.69769	1.97329	2.24889	0.00818988	2.26891e-4	0.0768929	0.0133228
chr11	65429263	65429363	4805835	0	+	0.48	(0.476,0.515]	chr11	446554	66	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	101	909	2	1.81917	1.973255	2.12734	2.57406e-4	1.1353e-4	0.0142989	0.0095817
chr15	95110133	95110233	6107743	0	+	0.39	(0.378,0.408]	chr15	581726	408	INTRON	INTRON	ENSG00000277654	ENSG00000277654.6	ENST00000621842.4:ENST00000615751.4:ENST00000616940.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	4	42	2	1.68393	1.9732249999999998	2.26252	0.056222	0.0503034	0.18407	0.156383
chr9	124520038	124520137	4346692	0	-	0.40404	(0.378,0.408]	chr9	399204	29	UTR3	UTR3:EXON_MRNA	NR6A1	ENSG00000148200.17	ENST00000487099.7	protein_coding	protein_coding	protein_coding	protein_coding	4	42	2	1.68393	1.9732249999999998	2.26252	0.056222	0.0503034	0.18407	0.156383
chr16	31184752	31184838	6340605	0	+	0.325581	(0.32,0.35]	chr16	608334	4	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	FUS	ENSG00000089280.19	ENST00000566605.5:ENST00000254108.12:ENST00000380244.7:ENST00000487509.6:ENST00000568685.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	112	2	1.42176	1.973215	2.52467	0.0511006	0.00164175	0.176696	0.0369207
chr4	17821783	17821882	1927167	0	+	0.333333	(0.32,0.35]	chr4	193739	33	INTRON	INTRON	NCAPG	ENSG00000109805.10	ENST00000251496.7:ENST00000514176.5:ENST00000509719.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	81	2	1.57443	1.97321	2.37199	0.048436	0.00465833	0.153635	0.0629753
chr14	102790946	102791046	5824064	0	+	0.37	(0.35,0.378]	chr14	552554	129	INTRON	INTRON	TRAF3	ENSG00000131323.16	ENST00000392745.8:ENST00000560371.5:ENST00000347662.8:ENST00000539721.5:ENST00000560463.5	protein_coding	protein_coding	protein_coding	protein_coding	4	46	2	1.90405	1.9731450000000001	2.04224	0.0482651	0.0363073	0.171852	0.138959
chr1	31934193	31934293	414396	0	-	0.45	(0.44,0.476]	chr1	49936	11	INTRON	INTRON	PTP4A2	ENSG00000184007.22	ENST00000647444.2:ENST00000649841.1:ENST00000468531.1:ENST00000534796.5:ENST00000532289.1:ENST00000526960.1:ENST00000524384.5:ENST00000528840.1:ENST00000494444.2:ENST00000529477.5:ENST00000533408.1:ENST00000475464.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	125	2	1.94898	1.9730699999999999	1.99716	0.00609692	0.00283912	0.0676501	0.049315
chr11	659334	659434	4889115	0	-	0.42	(0.408,0.44]	chr11	457704	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	DEAF1	ENSG00000177030.19	ENST00000382409.4:ENST00000527170.5:ENST00000685854.1:ENST00000683307.1:ENST00000528864.6:ENST00000525626.6:ENST00000682936.1:ENST00000690068.1:ENST00000692634.1:ENST00000687329.1:ENST00000686001.1:ENST00000689835.1:ENST00000525904.5:ENST00000530813.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	58	2	1.8865	1.972985	2.05947	0.0333232	0.0148842	0.134145	0.107116
chr22	26467654	26467754	7563960	0	-	0.4	(0.378,0.408]	chr22	773855	15	EXON_MRNA	EXON_MRNA:INTRON	HPS4	ENSG00000100099.21	ENST00000398145.7:ENST00000466781.5:ENST00000439453.5:ENST00000336873.9:ENST00000402105.7:ENST00000464362.5:ENST00000429411.5:ENST00000496385.5:ENST00000485842.5:ENST00000422379.2:ENST00000459918.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	63	2	1.94906	1.97292	1.99678	0.023282	0.0177959	0.118176	0.113452
chr2	147970042	147970142	1242264	0	-	0.29	(0.28,0.32]	chr2	131858	108	INTRON	INTRON	ORC4	ENSG00000115947.14	ENST00000392857.10:ENST00000264169.6:ENST00000536575.5:ENST00000535373.5:ENST00000540442.5:ENST00000461711.5:ENST00000496670.6:ENST00000490200.5:ENST00000416719.5:ENST00000457954.5:ENST00000440042.1:ENST00000495601.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	78	2	1.94591	1.972895	1.99988	0.0228757	0.0228482	0.125519	0.118056
chr16	58626375	58626473	6496351	0	-	0.336735	(0.32,0.35]	chr16	628651	12	INTRON	INTRON	CNOT1	ENSG00000125107.19	ENST00000317147.10:ENST00000569240.5:ENST00000567188.5:ENST00000441024.6:ENST00000565605.5:ENST00000564557.1:ENST00000569916.1:ENST00000569020.5:ENST00000568158.1:ENST00000569263.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	49	2	1.95271	1.97289	1.99307	0.0431213	0.04271	0.162255	0.148082
chr17	42506722	42506821	6611791	0	+	0.343434	(0.32,0.35]	chr17	644172	35	INTRON	INTRON	ATP6V0A1	ENSG00000033627.17	ENST00000393829.6:ENST00000343619.9:ENST00000537728.5:ENST00000264649.10:ENST00000585525.5:ENST00000544137.5:ENST00000587510.5:ENST00000586201.5:ENST00000588138.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	49	2	1.95271	1.97289	1.99307	0.0431213	0.04271	0.162255	0.148082
chr3	47587816	47587914	1683099	0	-	0.336735	(0.32,0.35]	chr3	171953	27	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	SMARCC1	ENSG00000173473.11	ENST00000254480.10:ENST00000425518.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	148	2	1.78841	1.9727700000000001	2.15713	0.0108341	0.00218809	0.0872636	0.0435144
chr1	25455956	25456054	48201	0	+	0.520408	(0.515,0.57]	chr1	5937	12	INTRON	INTRON	MACO1	ENSG00000204178.11	ENST00000399766.7:ENST00000374343.5:ENST00000647928.1:ENST00000470035.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	36	2	1.86007	1.97277	2.08547	0.0526611	0.0289426	0.178401	0.1274
chr1	61183723	61183823	128409	0	+	0.52	(0.515,0.57]	chr1	14778	508	INTRON	INTRON	NFIA	ENSG00000162599.17	ENST00000371191.5:ENST00000664495.1:ENST00000476646.5:ENST00000407417.7:ENST00000479364.1:ENST00000371189.8:ENST00000670151.1:ENST00000664149.1:ENST00000662015.1:ENST00000403491.8:ENST00000371187.7:ENST00000485903.6:ENST00000371185.6:ENST00000371184.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	36	2	1.86007	1.97277	2.08547	0.0526611	0.0289426	0.178401	0.1274
chr1	108956462	108956561	519108	0	-	0.535354	(0.515,0.57]	chr1	60928	16	INTRON	INTRON	CLCC1	ENSG00000121940.17	ENST00000690509.1:ENST00000687328.1:ENST00000685014.1:ENST00000685540.1:ENST00000686576.1:ENST00000688070.1:ENST00000691513.1:ENST00000686821.1:ENST00000692511.1:ENST00000689479.1:ENST00000687646.1:ENST00000687998.1:ENST00000687226.1:ENST00000693336.1:ENST00000689991.1:ENST00000687591.1:ENST00000691777.1:ENST00000690756.1:ENST00000688778.1:ENST00000685104.1:ENST00000689103.1:ENST00000687734.1:ENST00000686434.1:ENST00000685497.1:ENST00000691342.1:ENST00000686776.1:ENST00000692342.1:ENST00000689351.1:ENST00000692584.1:ENST00000692775.1:ENST00000687134.1:ENST00000675018.1:ENST00000690781.1:ENST00000691556.1:ENST00000689189.1:ENST00000687099.1:ENST00000685791.1:ENST00000687865.1:ENST00000687449.1:ENST00000688285.1:ENST00000369968.7:ENST00000674992.1:ENST00000675001.1:ENST00000369969.7:ENST00000356970.6:ENST00000688610.1:ENST00000675128.1:ENST00000693089.1:ENST00000675571.1:ENST00000675650.1:ENST00000369970.8:ENST00000674561.2:ENST00000675654.1:ENST00000675790.1:ENST00000675584.1:ENST00000692795.1:ENST00000691731.1:ENST00000689359.1:ENST00000676392.2:ENST00000676391.2:ENST00000676454.1:ENST00000674849.1:ENST00000675956.1:ENST00000302500.5:ENST00000675508.1:ENST00000688168.1:ENST00000693673.1:ENST00000692404.1:ENST00000686078.1:ENST00000690874.1:ENST00000692732.1:ENST00000685628.1:ENST00000676306.1:ENST00000676059.2:ENST00000674527.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	36	2	1.86007	1.97277	2.08547	0.0526611	0.0289426	0.178401	0.1274
chr3	49406806	49406906	1694011	0	-	0.34	(0.32,0.35]	chr3	173711	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	RHOA	ENSG00000067560.14	ENST00000678200.1:ENST00000422781.6:ENST00000676712.2:ENST00000678921.2:ENST00000445425.6:ENST00000454011.7:ENST00000418115.6:ENST00000679208.1:ENST00000677684.1:ENST00000431929.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	50	2	1.49965	1.972725	2.4458	0.0542985	0.0425977	0.182243	0.148082
chr1	174258368	174258468	258104	0	+	0.45	(0.44,0.476]	chr1	30773	54	INTRON	INTRON	RABGAP1L	ENSG00000152061.24	ENST00000357444.10:ENST00000251507.8:ENST00000681986.1:ENST00000457696.1	protein_coding	protein_coding	protein_coding	protein_coding	10	96	2	1.71119	1.9727199999999998	2.23425	0.0136438	0.00441123	0.101813	0.0587529
chr14	101765465	101765564	5818532	0	+	0.363636	(0.35,0.378]	chr14	551818	3	UTR3	UTR3:EXON_MRNA:INTRON	PPP2R5C	ENSG00000078304.20	ENST00000694906.1:ENST00000422945.6:ENST00000554442.5:ENST00000556068.5:ENST00000556260.6:ENST00000328724.9:ENST00000554504.1:ENST00000553890.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	19	200	2	1.85157	1.9726650000000001	2.09376	0.00434604	0.00107551	0.0580798	0.0300133
chr14	31007952	31008052	5857689	0	-	0.51	(0.476,0.515]	chr14	556508	436	INTRON	INTRON	STRN3	ENSG00000196792.12	ENST00000355683.9:ENST00000357479.10:ENST00000555358.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	93	2	1.4553	1.972635	2.48997	0.0623645	5.57267e-4	0.175357	0.021494
chr1	225402922	225403017	645489	0	-	0.273684	[0,0.28]	chr1	76319	16	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	LBR	ENSG00000143815.15	ENST00000272163.9:ENST00000338179.6:ENST00000651341.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	20	280	2	1.9068	1.972615	2.03843	0.00801666	0.00142319	0.0766625	0.0346887
chr11	75454133	75454228	4990372	0	-	0.315789	(0.28,0.32]	chr11	471572	8	INTRON	INTRON	GDPD5	ENSG00000158555.15	ENST00000336898.8:ENST00000529721.5:ENST00000533784.5:ENST00000527820.5:ENST00000443276.6:ENST00000527322.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	64	2	1.91611	1.972565	2.02902	0.0539102	0.0174423	0.164153	0.11269
chr11	129864229	129864328	5051547	0	-	0.30303	(0.28,0.32]	chr11	476647	7	UTR3	UTR3:EXON_MRNA	NFRKB	ENSG00000170322.15	ENST00000682444.1:ENST00000446488.7	protein_coding	protein_coding	protein_coding	protein_coding	5	64	2	1.91611	1.972565	2.02902	0.0539102	0.0174423	0.164153	0.11269
chr15	75883424	75883524	6065469	0	+	0.3	(0.28,0.32]	chr15	577586	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	UBE2Q2	ENSG00000140367.12	ENST00000569423.5:ENST00000267938.9:ENST00000561723.5:ENST00000561851.5:ENST00000426727.6:ENST00000567921.1:ENST00000563966.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	64	2	1.91611	1.972565	2.02902	0.0539102	0.0174423	0.164153	0.11269
chr5	79618651	79618743	2398788	0	+	0.380435	(0.378,0.408]	chr5	231687	7	INTRON	INTRON	TENT2	ENSG00000164329.14	ENST00000505571.5:ENST00000423041.6:ENST00000504233.5:ENST00000453514.6:ENST00000428308.6:ENST00000515807.5:ENST00000296783.7:ENST00000514095.5:ENST00000508620.5:ENST00000503620.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	10	83	2	1.2437	1.972555	2.70141	0.049286	0.00411614	0.174117	0.0564981
chr11	3753015	3753115	4894717	0	-	0.36	(0.35,0.378]	chr11	458871	3	SS5_PROX	SS5_PROX:INTRON	NUP98	ENSG00000110713.17	ENST00000359171.8:ENST00000324932.12:ENST00000650171.1:ENST00000355260.7:ENST00000397004.8:ENST00000397007.8:ENST00000527104.5:ENST00000529379.1:ENST00000397013.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	47	2	1.54563	1.97251	2.39939	0.046845	0.0458078	0.167716	0.149888
chr12	70283812	70283911	5166838	0	+	0.353535	(0.35,0.378]	chr12	489381	52	INTRON	INTRON	CNOT2	ENSG00000111596.14	ENST00000547780.5:ENST00000418359.7:ENST00000552319.5:ENST00000550160.5:ENST00000551661.5:ENST00000551132.5:ENST00000553078.5:ENST00000548021.5:ENST00000550641.6:ENST00000229195.8:ENST00000552915.5:ENST00000549443.5:ENST00000548741.5:ENST00000552483.5:ENST00000552422.5:ENST00000547321.5:ENST00000553020.5:ENST00000548159.5:ENST00000549750.5:ENST00000551043.5:ENST00000548599.5:ENST00000550194.5:ENST00000551873.5:ENST00000547867.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	47	2	1.54563	1.97251	2.39939	0.046845	0.0458078	0.167716	0.149888
chr9	135939372	135939472	4372338	0	-	0.66	(0.57,1]	chr9	402509	3	SS5_PROX	SS5_PROX:INTRON	UBAC1	ENSG00000130560.9	ENST00000371756.4:ENST00000489050.5:ENST00000465873.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	14	69	2	1.62927	1.97246	2.31565	0.0105866	5.89598e-4	0.091206400000000007	0.0225024
chr7	130098005	130098104	3413870	0	+	0.292929	(0.28,0.32]	chr7	319110	6	INTRON	INTRON	KLHDC10	ENSG00000128607.14	ENST00000335420.10:ENST00000463413.1:ENST00000468226.1	protein_coding	protein_coding	protein_coding	protein_coding	7	83	2	1.84658	1.97226	2.09794	0.0340483	0.0128582	0.134863	0.0990564
chr19	3978750	3978828	7119094	0	-	0.346154	(0.32,0.35]	chr19	716074	2	INTRON	INTRON	EEF2	ENSG00000167658.16	ENST00000309311.7:ENST00000596417.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	18	215	2	1.67614	1.9722049999999998	2.26827	0.00872059	8.63074e-4	0.0845538	0.0268312
chr7	106276826	106276924	3608529	0	-	0.265306	[0,0.28]	chr7	336538	19	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	NAMPT	ENSG00000105835.13	ENST00000681491.1:ENST00000222553.8:ENST00000681494.1:ENST00000680708.1:ENST00000681653.1:ENST00000681391.1:ENST00000680991.1:ENST00000680077.1:ENST00000681456.1:ENST00000680675.1:ENST00000681550.1:ENST00000680864.1:ENST00000680584.1:ENST00000680669.1:ENST00000424768.2:ENST00000681255.1:ENST00000679873.1:ENST00000679643.1:ENST00000681878.1:ENST00000489732.2:ENST00000679951.1:ENST00000680823.1:ENST00000680468.1:ENST00000681936.1:ENST00000680152.1:ENST00000681887.1:ENST00000680129.1:ENST00000680786.1:ENST00000681223.1:ENST00000679717.1:ENST00000484527.6:ENST00000354289.9:ENST00000491027.6:ENST00000393618.6:ENST00000489358.5:ENST00000441045.6:ENST00000417537.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	146	2	1.68871	1.9722	2.25569	0.0406982	0.00192379	0.1451	0.0406252
chr11	118760741	118760839	5046060	0	-	0.520408	(0.515,0.57]	chr11	475769	3	INTRON	INTRON	DDX6	ENSG00000110367.14	ENST00000534980.7:ENST00000620157.4:ENST00000526070.2	protein_coding	protein_coding	protein_coding	protein_coding	12	87	2	1.50569	1.972145	2.4386	0.0151197	0.00326739	0.108524	0.0508595
chr20	47333158	47333257	7349276	0	-	0.383838	(0.378,0.408]	chr20	749346	142	INTRON	INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000435836.5:ENST00000446894.5:ENST00000441977.1	protein_coding	protein_coding	protein_coding	protein_coding	11	108	2	1.53525	1.97214	2.40903	0.0243919	0.00165739	0.12011	0.0376447
chr20	50956464	50956563	7356114	0	-	0.454545	(0.44,0.476]	chr20	750157	13	EXON_MRNA	EXON_MRNA:INTRON	DPM1	ENSG00000000419.14	ENST00000371582.8:ENST00000466152.5:ENST00000683048.1:ENST00000371588.10:ENST00000371584.9:ENST00000683466.1:ENST00000681979.1:ENST00000684708.1:ENST00000413082.1:ENST00000682754.1:ENST00000683010.1:ENST00000684628.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	57	2	1.65297	1.972115	2.29126	0.0331814	0.0165638	0.145918	0.102621
chr2	147961661	147961760	1242180	0	-	0.393939	(0.378,0.408]	chr2	131858	24	INTRON	INTRON	ORC4	ENSG00000115947.14	ENST00000392857.10:ENST00000264169.6:ENST00000536575.5:ENST00000535373.5:ENST00000540442.5:ENST00000461711.5:ENST00000496670.6:ENST00000490200.5:ENST00000416719.5:ENST00000457954.5:ENST00000440042.1:ENST00000495601.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	55	2	1.34117	1.972065	2.60296	0.0505568	0.0267851	0.17538	0.123349
chr9	37121772	37121872	4117667	0	+	0.35	(0.32,0.35]	chr9	375363	1	SS5_PROX	SS5_PROX:INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000322831.6:ENST00000461038.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	88	2	1.44797	1.972035	2.4961	0.0304475	0.00967886	0.143385	0.0828038
chr7	99510254	99510353	3362434	0	+	0.575758	(0.57,1]	chr7	314086	34	INTRON	INTRON	ZKSCAN5	ENSG00000196652.12	ENST00000326775.10:ENST00000451158.5:ENST00000394170.6:ENST00000454175.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	22	2	1.77365	1.971955	2.17026	0.0670385	0.0220522	0.183051	0.123836
chr6	85591928	85592024	3150926	0	-	0.520833	(0.515,0.57]	chr6	293851	2	INTRON	INTRON	ENSG00000271793:SNX14	ENSG00000271793.2:ENSG00000135317.14	ENST00000682083.1:ENST00000683074.1:ENST00000681965.1:ENST00000682171.1:ENST00000684150.1:ENST00000683785.1:ENST00000682497.1:ENST00000684647.1:ENST00000683643.1:ENST00000682023.1:ENST00000682022.1:ENST00000683542.1:ENST00000683126.1:ENST00000683857.1:ENST00000683898.1:ENST00000682854.1:ENST00000682491.1:ENST00000682174.1:ENST00000684239.1:ENST00000682939.1:ENST00000684570.1:ENST00000682057.1:ENST00000682878.1:ENST00000683880.1:ENST00000684422.1:ENST00000682504.1:ENST00000683726.1:ENST00000684680.1:ENST00000683196.1:ENST00000683458.1:ENST00000683803.1:ENST00000684281.1:ENST00000682991.1:ENST00000683754.1:ENST00000683481.1:ENST00000682455.1:ENST00000682034.1:ENST00000684451.1:ENST00000683583.1:ENST00000682776.1:ENST00000683873.1:ENST00000683878.1:ENST00000683195.1:ENST00000682995.1:ENST00000682374.1:ENST00000683698.1:ENST00000682454.1:ENST00000682694.1:ENST00000682412.1:ENST00000682682.1:ENST00000346348.7:ENST00000314673.8:ENST00000682633.1:ENST00000683085.1:ENST00000682688.1:ENST00000684319.1:ENST00000683577.1:ENST00000682709.1:ENST00000684299.1:ENST00000682133.1:ENST00000682594.1:ENST00000683473.1:ENST00000682106.1:ENST00000683364.1:ENST00000683436.1:ENST00000684220.1:ENST00000683909.1:ENST00000684118.1:ENST00000681981.1:ENST00000682738.1:ENST00000509338.6:ENST00000684717.1:ENST00000682660.1:ENST00000683073.1:ENST00000515216.6:ENST00000684581.1:ENST00000683479.1:ENST00000682464.1:ENST00000684108.1:ENST00000682514.1:ENST00000684017.1:ENST00000684273.1:ENST00000513865.5:ENST00000505648.5:ENST00000369627.6:ENST00000508658.6:ENST00000683097.1:ENST00000683541.1:ENST00000683759.1:ENST00000369635.7:ENST00000684462.1:ENST00000682168.1:ENST00000513869.2:ENST00000514419.6:ENST00000683999.1:ENST00000503906.1:ENST00000683727.1:ENST00000684183.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	49	2	1.5060500000000001	1.97194	2.43783	0.0511812	0.00916404	0.176696	0.0812949
chr17	78120556	78120652	6844405	0	-	0.65625	(0.57,1]	chr17	677130	5	UTR3	UTR3:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TMC6	ENSG00000141524.18	ENST00000590602.6:ENST00000592076.5:ENST00000322914.7:ENST00000392467.7:ENST00000306591.11:ENST00000593044.5:ENST00000591436.5:ENST00000590934.1:ENST00000591756.1:ENST00000589553.5:ENST00000588087.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	30	2	1.37384	1.9719	2.56996	0.0766386	0.00499145	0.196164	0.0646039
chr2	9515707	9515807	1064069	0	-	0.36	(0.35,0.378]	chr2	113488	52	INTRON	INTRON	ADAM17	ENSG00000151694.14	ENST00000310823.8:ENST00000648548.1:ENST00000649227.1:ENST00000648857.1:ENST00000647979.1:ENST00000647610.1:ENST00000650116.1:ENST00000649686.1:ENST00000647622.1:ENST00000649972.1:ENST00000650241.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	107	2	1.22527	1.97187	2.71847	0.0773701	3.66214e-4	0.196285	0.0171615
chr9	83697525	83697624	4272978	0	-	0.434343	(0.408,0.44]	chr9	392981	110	INTRON	INTRON	UBQLN1	ENSG00000135018.14	ENST00000376395.9:ENST00000257468.11:ENST00000529923.1	protein_coding	protein_coding	protein_coding	protein_coding	8	77	2	1.85866	1.97176	2.08486	0.0145898	0.0106944	0.0981689	0.091856
chr6	150983739	150983839	2999062	0	+	0.31	(0.28,0.32]	chr6	280593	113	INTRON	INTRON	MTHFD1L	ENSG00000120254.16	ENST00000611279.4:ENST00000367321.8:ENST00000618312.4:ENST00000478643.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	73	2	1.68411	1.97175	2.25939	0.0323543	0.021772	0.145026	0.11491
chr2	61507556	61507655	1130909	0	-	0.494949	(0.476,0.515]	chr2	121597	49	INTRON	INTRON	XPO1	ENSG00000082898.19	ENST00000677110.1:ENST00000676553.1:ENST00000677556.1:ENST00000677814.1:ENST00000676771.1:ENST00000677803.1:ENST00000677239.1:ENST00000678790.1:ENST00000677928.1:ENST00000678182.1:ENST00000677150.1:ENST00000678172.1:ENST00000678360.1:ENST00000678081.1:ENST00000676889.1:ENST00000676783.1:ENST00000679035.1:ENST00000677422.1:ENST00000677417.1:ENST00000677813.1:ENST00000676999.1:ENST00000676667.1:ENST00000678263.1:ENST00000678877.1:ENST00000677933.1:ENST00000680228.1:ENST00000677289.1:ENST00000677190.1:ENST00000401558.7:ENST00000428210.5:ENST00000677290.1:ENST00000677850.1:ENST00000451765.6:ENST00000676789.1:ENST00000678741.1:ENST00000404992.6:ENST00000406957.5:ENST00000443240.5:ENST00000476585.5:ENST00000468259.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	24	198	2	1.46376	1.9717250000000002	2.47969	0.00756398	4.8154e-4	0.0773151	0.0203411
chr20	38944901	38945000	7272609	0	+	0.454545	(0.44,0.476]	chr20	739060	24	INTRON	INTRON	FAM83D	ENSG00000101447.15	ENST00000619304.4:ENST00000619850.2	protein_coding	protein_coding	protein_coding	protein_coding	6	61	2	1.87325	1.971705	2.07016	0.0265709	0.0151815	0.134088	0.0994339
chr10	21709750	21709849	4406188	0	+	0.515152	(0.476,0.515]	chr10	406543	7	INTRON	INTRON	MLLT10	ENSG00000078403.17	ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000651298.1:ENST00000377059.7:ENST00000651382.1:ENST00000438473.6:ENST00000420525.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	59	2	1.38299	1.97166	2.56033	0.0361854	0.0287634	0.152746	0.127066
chr10	28577406	28577506	4414248	0	+	0.32	(0.28,0.32]	chr10	407148	390	INTRON	INTRON	WAC	ENSG00000095787.24	ENST00000680735.1:ENST00000375664.8:ENST00000428935.6:ENST00000651598.1:ENST00000628285.3:ENST00000681112.1:ENST00000679570.1:ENST00000375646.5:ENST00000354911.9:ENST00000347934.8:ENST00000420266.6:ENST00000651885.1:ENST00000651441.1:ENST00000679398.1:ENST00000424454.5:ENST00000442148.6:ENST00000448193.5:ENST00000414108.6:ENST00000679428.1:ENST00000439676.5:ENST00000345541.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	106	2	1.96376	1.97166	1.97956	0.0480066	0.00395618	0.153019	0.057511
chr9	77397163	77397263	4147206	0	+	0.59	(0.57,1]	chr9	378127	9	INTRON	INTRON	VPS13A	ENSG00000197969.14	ENST00000376636.7:ENST00000360280.8:ENST00000484581.6:ENST00000376646.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	22	2	1.91937	1.9716399999999998	2.02391	0.0468438	0.0339274	0.167716	0.134508
chrX	41344409	41344486	7645770	0	+	0.350649	(0.35,0.378]	chrX	782529	3	CDS	CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	DDX3X	ENSG00000215301.11	ENST00000625837.2:ENST00000626301.2:ENST00000629785.2:ENST00000630255.2:ENST00000630370.2:ENST00000630858.2:ENST00000629496.3:ENST00000478993.5:ENST00000457138.7:ENST00000644876.2:ENST00000399959.7:ENST00000644074.1:ENST00000645338.1:ENST00000646196.1:ENST00000642793.1:ENST00000646940.1:ENST00000644307.1:ENST00000645561.1:ENST00000645080.1:ENST00000642597.1:ENST00000642722.1:ENST00000644109.1:ENST00000644958.1:ENST00000646122.1:ENST00000644513.1:ENST00000645589.1:ENST00000441189.4:ENST00000646822.1:ENST00000631641.2:ENST00000646223.1:ENST00000643963.1:ENST00000646319.1:ENST00000542215.5:ENST00000644073.1:ENST00000644677.1:ENST00000642322.1:ENST00000645120.1:ENST00000646107.1:ENST00000646627.1:ENST00000642589.1:ENST00000645380.1:ENST00000646390.1:ENST00000642424.1:ENST00000642161.1:ENST00000645574.1:ENST00000646679.1:ENST00000642763.1:ENST00000647286.1:ENST00000642687.1:ENST00000642801.1:ENST00000643820.1:ENST00000646093.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	126	2	1.6421	1.9715799999999999	2.30106	0.0173423	0.0015939	0.104152	0.0367961
chrX	74260769	74260863	7841284	0	-	0.414894	(0.408,0.44]	chrX	799722	6	EXON_LNCRNA	EXON_LNCRNA:INTRON	FTX	ENSG00000230590.12	ENST00000603672.5:ENST00000430772.6:ENST00000602776.6:ENST00000638681.1:ENST00000652319.1:ENST00000661133.1:ENST00000652071.1:ENST00000602812.6:ENST00000651703.1:ENST00000653018.1:ENST00000658448.1:ENST00000662240.1:ENST00000652527.1:ENST00000651451.1:ENST00000657611.1:ENST00000660481.1:ENST00000659574.1:ENST00000661084.1:ENST00000662494.1:ENST00000670936.1:ENST00000602420.6:ENST00000658203.1:ENST00000638985.1:ENST00000691187.1:ENST00000603037.2:ENST00000687056.1:ENST00000654870.2:ENST00000652540.1:ENST00000652331.2:ENST00000652013.1:ENST00000669263.1:ENST00000657070.1:ENST00000665069.1:ENST00000651936.1:ENST00000652496.1:ENST00000653874.2:ENST00000661335.1:ENST00000664123.1:ENST00000658439.1:ENST00000666535.1:ENST00000652970.1:ENST00000423992.3:ENST00000665313.2:ENST00000651140.1:ENST00000660100.1:ENST00000693483.1:ENST00000656041.1:ENST00000657327.1:ENST00000664343.1:ENST00000656977.1:ENST00000671343.1:ENST00000659407.1:ENST00000671067.1:ENST00000660829.1:ENST00000671385.1	lncRNA	lncRNA	lncRNA	lncRNA	9	84	2	1.64527	1.97152	2.29777	0.0175998	0.0067764	0.11319	0.0711802
chr9	137656724	137656824	4223853	0	+	0.38	(0.378,0.408]	chr9	388170	53	INTRON	INTRON	EHMT1	ENSG00000181090.21	ENST00000462484.5:ENST00000371394.6:ENST00000630754.2:ENST00000460843.6:ENST00000626216.2:ENST00000629335.2:ENST00000637335.1:ENST00000636376.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	82	2	1.78703	1.9713850000000002	2.15574	0.0240043	0.00519611	0.119664	0.0654762
chr17	39384183	39384283	6766478	0	-	0.51	(0.476,0.515]	chr17	665497	406	INTRON	INTRON	FBXL20	ENSG00000108306.13	ENST00000264658.11:ENST00000583610.5:ENST00000394294.7:ENST00000577399.5:ENST00000647139.1	protein_coding	protein_coding	protein_coding	protein_coding	6	60	2	1.69138	1.9713800000000001	2.25138	0.0481165	0.00692374	0.153019	0.0753208
chr22	41894419	41894519	7526628	0	+	0.46	(0.44,0.476]	chr22	769436	2	SS3_PROX	SS3_PROX:INTRON	SREBF2	ENSG00000198911.12	ENST00000612482.4:ENST00000361204.9:ENST00000424354.5:ENST00000491541.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	60	2	1.81283	1.9713749999999999	2.12992	0.0343005	0.010975	0.135641	0.092635
chr5	140486566	140486663	2503695	0	+	0.319588	(0.28,0.32]	chr5	239242	1	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	ANKHD1	ENSG00000131503.21	ENST00000297183.10:ENST00000360839.7:ENST00000421134.5:ENST00000246149.10:ENST00000412116.5:ENST00000506755.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	77	2	1.76048	1.9712999999999998	2.18212	0.0450149	0.010265700000000001	0.149888	0.089002
chr9	120844226	120844322	4190645	0	+	0.4375	(0.408,0.44]	chr9	382173	13	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:INTRON	CUTALP	ENSG00000226752.10	ENST00000589026.5:ENST00000639576.1:ENST00000640391.2:ENST00000640296.2:ENST00000458394.2:ENST00000687129.1:ENST00000640066.1	transcribed_unitary_pseudogene	retained_intron	transcribed_unitary_pseudogene	retained_intron:processed_transcript	5	46	2	1.44993	1.9712549999999998	2.49258	0.0638951	0.0314608	0.177824	0.144381
chrX	49175478	49175575	7816997	0	-	0.42268	(0.408,0.44]	chrX	797177	8	UTR3	UTR3:EXON_MRNA	PRICKLE3	ENSG00000012211.13	ENST00000599218.6:ENST00000540849.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	46	2	1.44993	1.9712549999999998	2.49258	0.0638951	0.0314608	0.177824	0.144381
chr2	53939555	53939655	1120259	0	-	0.26	[0,0.28]	chr2	120079	2	SS5_PROX	SS5_PROX:INTRON	PSME4	ENSG00000068878.15	ENST00000404125.6:ENST00000389993.7:ENST00000481518.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	94	2	1.73604	1.97123	2.20642	0.0280845	0.0209881	0.125065	0.122348
chr7	100343001	100343099	3364407	0	+	0.510204	(0.476,0.515]	chr7	314641	18	INTRON	INTRON	STAG3L5P:STAG3L5P-PVRIG2P-PILRB	ENSG00000242294.6:ENSG00000272752.6	ENST00000473757.5:ENST00000470714.5:ENST00000310771.8:ENST00000483329.6:ENST00000444874.5:ENST00000488972.6:ENST00000493499.1	lncRNA	retained_intron	lncRNA:transcribed_unprocessed_pseudogene	retained_intron:lncRNA:processed_transcript	9	89	2	1.65426	1.97119	2.28812	0.0231344	0.00344676	0.126939	0.0517761
chr22	21840732	21840832	7561117	0	-	0.3	(0.28,0.32]	chr22	773388	325	INTRON	INTRON	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	4	50	2	1.56134	1.971175	2.38101	0.0740624	0.0456017	0.191153	0.164236
chr11	62852381	62852481	4961854	0	-	0.4	(0.378,0.408]	chr11	467079	5	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SNHG1	ENSG00000255717.8	ENST00000689147.1:ENST00000686500.1:ENST00000665371.1:ENST00000687243.1:ENST00000537869.6:ENST00000686081.1:ENST00000686670.1:ENST00000690476.1:ENST00000688102.1:ENST00000691255.1:ENST00000539303.6:ENST00000538654.6:ENST00000540725.6:ENST00000658540.1:ENST00000685229.1:ENST00000686478.1:ENST00000686008.1:ENST00000692887.1:ENST00000691324.1:ENST00000692454.1:ENST00000685577.1:ENST00000693734.1:ENST00000537068.5:ENST00000537925.5:ENST00000541416.6:ENST00000541578.6:ENST00000537024.6:ENST00000686740.1:ENST00000663967.1:ENST00000670323.1:ENST00000668048.1:ENST00000660547.1:ENST00000689664.1:ENST00000690542.1:ENST00000539921.7:ENST00000687029.1:ENST00000661616.1:ENST00000670469.1:ENST00000664307.1:ENST00000665512.1:ENST00000656268.1:ENST00000535689.6:ENST00000663237.1:ENST00000544550.6:ENST00000660730.1:ENST00000660960.1:ENST00000662229.1:ENST00000670729.1:ENST00000655919.1:ENST00000671236.1:ENST00000667655.1:ENST00000653690.1:ENST00000661936.1:ENST00000544983.2:ENST00000535076.6:ENST00000656240.1:ENST00000539975.5:ENST00000656589.1:ENST00000545920.2:ENST00000537965.6:ENST00000670502.1:ENST00000662400.1:ENST00000663092.1:ENST00000656241.1:ENST00000652879.1:ENST00000668309.1:ENST00000545440.5:ENST00000542112.5:ENST00000541615.5	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	48	471	2	1.9255	1.971165	2.01683	5.33165e-4	3.55714e-4	0.0213498	0.0168968
chr7	151233512	151233612	3448980	0	+	0.54	(0.515,0.57]	chr7	322282	8	UTR5	UTR5:EXON_MRNA:SS3_PROX:INTRON	CHPF2	ENSG00000033100.17	ENST00000035307.7:ENST00000495645.5:ENST00000482173.6:ENST00000691224.1:ENST00000685322.1:ENST00000692651.1:ENST00000690577.1:ENST00000690444.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	37	2	1.5060500000000001	1.9709700000000001	2.43589	0.0511812	0.0370871	0.176696	0.139194
chr1	2249868	2249968	2382	0	+	0.49	(0.476,0.515]	chr1	557	14	INTRON	INTRON	SKI	ENSG00000157933.10	ENST00000378536.5:ENST00000508416.1:ENST00000478223.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	97	2	1.93124	1.9709699999999999	2.0107	0.00916342	0.00572098	0.0812949	0.0681402
chr6	15263354	15263454	2823119	0	+	0.34	(0.32,0.35]	chr6	265190	140	INTRON	INTRON	JARID2	ENSG00000008083.14	ENST00000341776.7:ENST00000397311.4	protein_coding	protein_coding	protein_coding	protein_coding	7	81	2	1.8526	1.9709500000000002	2.0893	0.0332438	0.00738971	0.134145	0.0769106
chr18	2656561	2656661	6864868	0	+	0.49	(0.476,0.515]	chr18	679939	3	SS5_PROX	SS5_PROX:INTRON	SMCHD1	ENSG00000101596.17	ENST00000320876.11:ENST00000688342.1:ENST00000684915.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	12	114	2	1.95834	1.9709050000000001	1.98347	0.00823447	0.0030602	0.0772968	0.0509893
chrX	41338183	41338277	7645688	0	+	0.351064	(0.35,0.378]	chrX	782495	6	UTR3	UTR3:EXON_MRNA:INTRON	DDX3X	ENSG00000215301.11	ENST00000625837.2:ENST00000626301.2:ENST00000629785.2:ENST00000630255.2:ENST00000630370.2:ENST00000630858.2:ENST00000629496.3:ENST00000610559.5:ENST00000611546.2:ENST00000478993.5:ENST00000457138.7:ENST00000643821.1:ENST00000644876.2:ENST00000399959.7:ENST00000644074.1:ENST00000645338.1:ENST00000646196.1:ENST00000642793.1:ENST00000646940.1:ENST00000644307.1:ENST00000645561.1:ENST00000645080.1:ENST00000642597.1:ENST00000642722.1:ENST00000644109.1:ENST00000644958.1:ENST00000646122.1:ENST00000644513.1:ENST00000645589.1:ENST00000441189.4:ENST00000646822.1:ENST00000631641.2:ENST00000615742.4:ENST00000647219.1:ENST00000480592.6:ENST00000646223.1:ENST00000643963.1:ENST00000646319.1:ENST00000645783.1:ENST00000642624.1:ENST00000542215.5:ENST00000644073.1:ENST00000644677.1:ENST00000615313.5:ENST00000642322.1:ENST00000622198.5:ENST00000645120.1:ENST00000646107.1:ENST00000646627.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	87	2	1.82648	1.970895	2.11531	0.0150408	0.0119629	0.0994339	0.0962115
chr5	83056294	83056393	2666484	0	-	0.272727	[0,0.28]	chr5	252474	36	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TMEM167A	ENSG00000174695.10	ENST00000502346.2:ENST00000511450.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	113	2	1.91265	1.97078	2.02891	0.0236076	0.0112687	0.118716	0.0944526
chr19	1077486	1077579	6993752	0	+	0.494624	(0.476,0.515]	chr19	692780	1	UTR5	UTR5:EXON_MRNA:SS3_PROX:INTRON	ARHGAP45	ENSG00000180448.11	ENST00000539243.6:ENST00000313093.7:ENST00000587602.5:ENST00000591293.2:ENST00000590214.5:ENST00000586866.5:ENST00000543365.5:ENST00000590577.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	84	2	1.56702	1.9707500000000002	2.37448	0.0257979	0.00419067	0.121115	0.0591344
chr5	78084348	78084448	2649013	0	-	0.48	(0.476,0.515]	chr5	251637	400	INTRON	INTRON	AP3B1	ENSG00000132842.15	ENST00000519295.6:ENST00000255194.11:ENST00000695515.1:ENST00000695454.1:ENST00000695511.1:ENST00000695453.1:ENST00000695455.1:ENST00000695513.1:ENST00000695488.1:ENST00000695450.1:ENST00000695507.1:ENST00000695506.1:ENST00000695512.1:ENST00000695510.1:ENST00000695451.1:ENST00000695447.1:ENST00000695458.1:ENST00000695505.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	38	2	1.80284	1.9706899999999998	2.13854	0.0776563	0.033161	0.196285	0.145899
chr3	195524618	195524718	1896034	0	-	0.36	(0.35,0.378]	chr3	189739	4	SS5_PROX	SS5_PROX:INTRON	PPP1R2	ENSG00000184203.8	ENST00000618156.5:ENST00000418939.1:ENST00000438848.5:ENST00000413183.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	80	2	1.89908	1.97066	2.04224	0.0363073	0.00658205	0.138959	0.0737338
chr7	111486061	111486158	3623348	0	-	0.350515	(0.35,0.378]	chr7	337112	20	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000452895.5:ENST00000447215.5:ENST00000492938.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	66	2	1.91706	1.97065	2.02424	0.026412	0.0164934	0.122506	0.110301
chr1	55087135	55087234	464547	0	-	0.222222	[0,0.28]	chr1	55991	7	INTRON	INTRON	USP24	ENSG00000162402.14	ENST00000294383.7	protein_coding	protein_coding	protein_coding	protein_coding	7	102	2	1.80873	1.970545	2.13236	0.0234525	0.017376	0.128429	0.104294
chr8	104536959	104537059	4014201	0	-	0.33	(0.32,0.35]	chr8	367439	46	INTRON	INTRON	LRP12	ENSG00000147650.12	ENST00000424843.6:ENST00000276654.10:ENST00000520770.1:ENST00000519675.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	67	2	1.80487	1.970535	2.1362	0.0291083	0.0210603	0.128029	0.122559
chr2	177382672	177382772	1277052	0	-	0.4	(0.378,0.408]	chr2	134794	338	INTRON	INTRON	NFE2L2:ENSG00000213963	ENSG00000116044.16:ENSG00000213963.6	ENST00000464747.5:ENST00000397057.6:ENST00000456746.5:ENST00000447413.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	7	66	2	1.58985	1.97044	2.35103	0.0290335	0.014158	0.141186	0.0959618
chrX	13313740	13313840	7622187	0	+	0.53	(0.515,0.57]	chrX	780270	4	SS5_PROX	SS5_PROX:INTRON	GS1-600G8.3	ENSG00000231216.1	ENST00000431486.1	lncRNA	lncRNA	lncRNA	lncRNA	8	67	2	1.82142	1.97044	2.11946	0.0191173	0.00559899	0.108861	0.0678837
chr2	189457881	189457973	952791	0	+	0.380435	(0.378,0.408]	chr2	103659	1	INTRON	INTRON	WDR75	ENSG00000115368.10	ENST00000436347.5:ENST00000314761.9:ENST00000427960.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	80	2	1.55037	1.970425	2.39048	0.0365151	0.00395852	0.138959	0.057511
chr22	19109052	19109151	7551881	0	-	0.40404	(0.378,0.408]	chr22	771903	192	INTRON	INTRON	DGCR2	ENSG00000070413.20	ENST00000537045.5:ENST00000545799.5:ENST00000263196.12:ENST00000389262.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	80	2	1.55037	1.970425	2.39048	0.0365151	0.00395852	0.138959	0.057511
chr1	32171291	32171391	64103	0	+	0.53	(0.515,0.57]	chr1	8150	5	UTR3	UTR3:EXON_MRNA	KPNA6	ENSG00000025800.14	ENST00000373625.8:ENST00000471599.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	17	120	2	1.05016	1.9704	2.89064	0.0558253	1.33133e-4	0.18407	0.0105133
chr8	90347542	90347642	3793569	0	+	0.31	(0.28,0.32]	chr8	351786	1004	INTRON	INTRON	LINC00534	ENSG00000253394.7	ENST00000662145.1:ENST00000655523.1:ENST00000517400.6:ENST00000658299.1:ENST00000663329.1:ENST00000658342.1:ENST00000523283.6:ENST00000655219.1:ENST00000662692.1:ENST00000667296.1:ENST00000667565.1:ENST00000523406.2:ENST00000659030.1:ENST00000653734.1:ENST00000654785.1:ENST00000524361.5:ENST00000668745.1:ENST00000666641.2:ENST00000661519.1:ENST00000671657.1:ENST00000655123.1:ENST00000663098.1:ENST00000670903.1:ENST00000654946.1	lncRNA	lncRNA	lncRNA	lncRNA	6	77	2	1.72279	1.9703849999999998	2.21798	0.0496859	0.00901091	0.156383	0.0851009
chr19	11125032	11125131	7017194	0	+	0.474747	(0.44,0.476]	chr19	697502	13	INTRON	INTRON	LDLR	ENSG00000130164.14	ENST00000557933.5:ENST00000558518.6:ENST00000545707.5:ENST00000535915.5:ENST00000455727.6:ENST00000558013.5:ENST00000252444.9	protein_coding	protein_coding	protein_coding	protein_coding	6	57	2	1.60176	1.970375	2.33899	0.0389597	0.0142027	0.160861	0.0959987
chr1	42178420	42178519	430850	0	-	0.424242	(0.408,0.44]	chr1	52259	20	UTR3	UTR3:EXON_MRNA	FOXJ3	ENSG00000198815.9	ENST00000372573.5:ENST00000372572.5:ENST00000372571.5:ENST00000361776.5:ENST00000545068.5:ENST00000361346.6	protein_coding	protein_coding	protein_coding	protein_coding	9	84	2	1.61024	1.9703149999999998	2.33039	0.0200746	0.00598147	0.121073	0.0674604
chr3	5128984	5129084	1353642	0	+	0.37	(0.35,0.378]	chr3	142360	4	SS5_PROX	SS5_PROX:INTRON	ARL8B	ENSG00000134108.14	ENST00000429403.5:ENST00000256496.8:ENST00000455168.5:ENST00000444332.1:ENST00000419534.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	100	2	1.8395	1.9702950000000001	2.10109	0.014685	0.00629232	0.0983813	0.0722266
chr18	9948462	9948558	6873696	0	+	0.260417	[0,0.28]	chr18	680899	10	EXON_MRNA	EXON_MRNA:INTRON	VAPA	ENSG00000101558.14	ENST00000400000.7:ENST00000340541.4:ENST00000584796.5:ENST00000583879.5:ENST00000583475.1:ENST00000577539.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	102	2	1.34345	1.9702549999999999	2.59706	0.0563613	0.00894925	0.184423	0.0799922
chr16	23885781	23885880	6324258	0	+	0.444444	(0.44,0.476]	chr16	605697	166	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000645517.1:ENST00000498739.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	16	134	2	1.2694	1.970245	2.67109	0.0282713	6.01994e-4	0.137721	0.0226059
chr2	169597298	169597397	906600	0	+	0.414141	(0.408,0.44]	chr2	100021	42	INTRON	INTRON	PPIG	ENSG00000138398.17	ENST00000678088.1:ENST00000677392.1:ENST00000433207.6:ENST00000679324.1:ENST00000414307.6:ENST00000676508.1:ENST00000260970.8:ENST00000678695.1:ENST00000409714.7:ENST00000530152.5:ENST00000677750.1:ENST00000676557.1:ENST00000678721.1:ENST00000462903.6:ENST00000676756.1:ENST00000679107.1:ENST00000678499.1:ENST00000678638.1:ENST00000448752.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	83	2	1.70409	1.97024	2.23639	0.028108	0.00445002	0.137011	0.0592079
chr6	4877295	4877395	2791872	0	+	0.24	[0,0.28]	chr6	263602	406	INTRON	INTRON	CDYL	ENSG00000153046.18	ENST00000328908.9:ENST00000491864.1:ENST00000440139.5:ENST00000483019.1:ENST00000397588.8:ENST00000472453.5:ENST00000449732.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	54	2	1.66929	1.97024	2.27119	0.070351	0.0537506	0.184298	0.180803
chr7	12341658	12341758	3484783	0	-	0.26	[0,0.28]	chr7	325829	2	SS5_PROX	SS5_PROX:INTRON	VWDE	ENSG00000146530.15	ENST00000275358.8:ENST00000452576.6:ENST00000521169.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	62	2	1.84147	1.97023	2.09899	0.0610416	0.0371453	0.193277	0.139304
chr1	65289083	65289183	135884	0	+	0.38	(0.378,0.408]	chr1	15346	238	INTRON	INTRON	DNAJC6	ENSG00000116675.16	ENST00000463018.5:ENST00000494710.6:ENST00000263441.11:ENST00000395325.7:ENST00000483402.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	47	2	1.39189	1.97019	2.54849	0.0751636	0.0273196	0.193731	0.136494
chr17	50747002	50747102	6627264	0	+	0.3	(0.28,0.32]	chr17	647244	3	SS5_PROX	SS5_PROX:INTRON	LUC7L3	ENSG00000108848.16	ENST00000393227.6:ENST00000505658.6:ENST00000240304.5:ENST00000508482.5:ENST00000504065.5:ENST00000509487.1:ENST00000511974.5:ENST00000513969.5:ENST00000503728.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	91	2	1.60343	1.969965	2.3365	0.0669889	0.00286158	0.183051	0.0494641
chr17	49048257	49048356	6625136	0	+	0.474747	(0.44,0.476]	chr17	646677	15	INTRON	INTRON	IGF2BP1	ENSG00000159217.10	ENST00000290341.8:ENST00000431824.2	protein_coding	protein_coding	protein_coding	protein_coding	11	97	2	1.3337	1.9699499999999999	2.6062	0.0396627	0.00148054	0.143072	0.0353633
chr3	5179460	5179556	1354157	0	+	0.34375	(0.32,0.35]	chr3	142395	8	UTR3	UTR3:EXON_MRNA	ARL8B	ENSG00000134108.14	ENST00000256496.8:ENST00000455168.5:ENST00000419534.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	14	157	2	1.95484	1.9699200000000001	1.985	0.00651783	0.003058	0.0699952	0.0509893
chr1	54369401	54369501	463391	0	-	0.41	(0.408,0.44]	chr1	55784	127	INTRON	INTRON	SSBP3	ENSG00000157216.16	ENST00000610401.5:ENST00000357475.9:ENST00000371319.8:ENST00000417664.7:ENST00000533946.6:ENST00000371320.8:ENST00000525990.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	78	2	1.67356	1.969865	2.26617	0.0239999	0.00649402	0.119664	0.0734343
chr5	113018730	113018829	2453817	0	+	0.383838	(0.378,0.408]	chr5	235130	54	UTR3	UTR3:EXON_MRNA	DCP2	ENSG00000172795.17	ENST00000515408.5:ENST00000389063.3	protein_coding	protein_coding	protein_coding	protein_coding	11	89	2	1.38354	1.969805	2.55607	0.0262162	0.00704647	0.133676	0.0718189
chr10	6180391	6180491	4386349	0	+	0.28	[0,0.28]	chr10	404834	160	INTRON	INTRON	PFKFB3	ENSG00000170525.21	ENST00000379789.8:ENST00000536985.6:ENST00000639949.1	protein_coding	protein_coding	protein_coding	protein_coding	5	73	2	1.95669	1.9698	1.98291	0.0494143	0.0237518	0.156195	0.129075
chr12	74282495	74282595	5368275	0	-	0.26	[0,0.28]	chr12	512132	127	INTRON	INTRON	LINC02882:ENSG00000257183	ENSG00000251138.7:ENSG00000257183.1	ENST00000663261.1:ENST00000665907.1:ENST00000669556.1:ENST00000653134.1:ENST00000549905.5:ENST00000662107.1:ENST00000658833.1:ENST00000515416.7:ENST00000551726.2:ENST00000670573.1:ENST00000656876.1:ENST00000668228.1:ENST00000668997.1:ENST00000665895.1:ENST00000670471.1:ENST00000658677.1:ENST00000668665.1:ENST00000552046.1	lncRNA	lncRNA	lncRNA	lncRNA	5	73	2	1.84046	1.969725	2.09899	0.0371453	0.0335889	0.146709	0.139304
chr9	96411549	96411648	4295304	0	-	0.242424	[0,0.28]	chr9	394970	129	INTRON	INTRON	ZNF367	ENSG00000165244.7	ENST00000375256.5	protein_coding	protein_coding	protein_coding	protein_coding	5	73	2	1.84046	1.969725	2.09899	0.0371453	0.0335889	0.146709	0.139304
chr7	123733919	123734019	3632510	0	-	0.3	(0.28,0.32]	chr7	337581	243	INTRON	INTRON	WASL	ENSG00000106299.8	ENST00000223023.5	protein_coding	protein_coding	protein_coding	protein_coding	7	84	2	1.92947	1.9696799999999999	2.00989	0.0427801	0.00937907	0.148082	0.0860074
chr2	61500568	61500660	1130832	0	-	0.380435	(0.378,0.408]	chr2	121585	1	INTRON	INTRON	XPO1	ENSG00000082898.19	ENST00000677110.1:ENST00000676553.1:ENST00000677556.1:ENST00000677814.1:ENST00000676771.1:ENST00000677803.1:ENST00000677239.1:ENST00000678790.1:ENST00000677928.1:ENST00000678182.1:ENST00000677150.1:ENST00000678172.1:ENST00000678360.1:ENST00000678081.1:ENST00000676889.1:ENST00000676783.1:ENST00000679035.1:ENST00000677422.1:ENST00000677417.1:ENST00000677813.1:ENST00000676999.1:ENST00000676667.1:ENST00000678263.1:ENST00000678877.1:ENST00000677933.1:ENST00000680228.1:ENST00000677289.1:ENST00000677190.1:ENST00000481073.6:ENST00000401558.7:ENST00000428210.5:ENST00000677290.1:ENST00000677850.1:ENST00000451765.6:ENST00000676789.1:ENST00000678741.1:ENST00000404992.6:ENST00000406957.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	113	2	1.3638	1.9696749999999998	2.57555	0.0513185	3.56957e-4	0.158207	0.0169148
chr4	70936126	70936226	1970843	0	+	0.49	(0.476,0.515]	chr4	197571	332	INTRON	INTRON	MOB1B	ENSG00000173542.9	ENST00000502869.5:ENST00000509041.5:ENST00000309395.7:ENST00000396051.2:ENST00000511449.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	9	77	2	1.67133	1.9696099999999999	2.26789	0.0176567	0.012282	0.105233	0.0970106
chr20	56372518	56372615	7358682	0	-	0.309278	(0.28,0.32]	chr20	750340	15	INTRON	INTRON	AURKA	ENSG00000087586.18	ENST00000395914.5:ENST00000395913.7:ENST00000312783.10:ENST00000395911.5:ENST00000395915.8:ENST00000347343.6:ENST00000371356.6:ENST00000395907.5	protein_coding	protein_coding	protein_coding	protein_coding	8	102	2	1.57779	1.969535	2.36128	0.0502605	0.0025684	0.156383	0.0466761
chrX	66017947	66018046	7672632	0	+	0.363636	(0.35,0.378]	chrX	785238	16	EXON_LNCRNA	EXON_LNCRNA:INTRON	MIR223HG	ENSG00000274536.8	ENST00000618234.5:ENST00000621933.2:ENST00000691658.1:ENST00000658749.1	lncRNA	lncRNA	lncRNA	lncRNA	5	49	2	1.77736	1.9695300000000002	2.1617	0.0771502	0.0225073	0.196285	0.124921
chr13	19730942	19731041	5552421	0	-	0.313131	(0.28,0.32]	chr13	530702	2	INTRON	INTRON	PSPC1	ENSG00000121390.19	ENST00000471658.5:ENST00000492741.5:ENST00000338910.9:ENST00000619300.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	47	2	1.61031	1.96951	2.32871	0.0600513	0.0581621	0.190658	0.167723
chr8	129324064	129324164	4058499	0	-	0.39	(0.378,0.408]	chr8	369539	204	INTRON	INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000657400.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1	lncRNA	lncRNA	lncRNA	lncRNA	11	113	2	1.9515	1.969385	1.98727	0.00641948	0.00639052	0.0726555	0.0695904
chr10	73086187	73086286	4647740	0	-	0.383838	(0.378,0.408]	chr10	427557	37	INTRON	INTRON	P4HA1	ENSG00000122884.13	ENST00000394890.7:ENST00000307116.6:ENST00000373008.6:ENST00000440381.5:ENST00000263556.3	protein_coding	protein_coding	protein_coding	protein_coding	5	52	2	1.58349	1.9693800000000001	2.35527	0.0653091	0.0121511	0.180158	0.0963966
chr16	18161756	18161855	6454252	0	-	0.444444	(0.44,0.476]	chr16	621964	103	INTRON	INTRON	ENSG00000260242	ENSG00000260242.1	ENST00000563866.1	lncRNA	lncRNA	lncRNA	lncRNA	9	89	2	1.93083	1.9693800000000001	2.00793	0.00937685	0.00932249	0.0859966	0.0817766
chr1	180740278	180740378	270679	0	+	0.41	(0.408,0.44]	chr1	31620	575	INTRON	INTRON	XPR1	ENSG00000143324.14	ENST00000367590.9:ENST00000367589.3	protein_coding	protein_coding	protein_coding	protein_coding	5	53	2	1.93243	1.96936	2.00629	0.0441194	0.0189661	0.162255	0.108861
chr10	28593810	28593908	4414418	0	+	0.316327	(0.28,0.32]	chr10	407165	21	INTRON	INTRON	WAC	ENSG00000095787.24	ENST00000680735.1:ENST00000375664.8:ENST00000428935.6:ENST00000628285.3:ENST00000681112.1:ENST00000679570.1:ENST00000375646.5:ENST00000354911.9:ENST00000347934.8:ENST00000420266.6:ENST00000679398.1:ENST00000424454.5:ENST00000442148.6:ENST00000414108.6:ENST00000679428.1:ENST00000439676.5:ENST00000345541.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	89	2	1.76048	1.9693299999999998	2.17818	0.0450149	0.00555379	0.149888	0.0675078
chr3	197853312	197853409	1598355	0	+	0.525773	(0.515,0.57]	chr3	165636	3	INTRON	INTRON	LRCH3	ENSG00000186001.14	ENST00000438796.6:ENST00000428136.2:ENST00000425562.7:ENST00000441090.6:ENST00000414675.6:ENST00000334859.8:ENST00000461674.5:ENST00000452660.5:ENST00000433298.5:ENST00000481048.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	59	2	1.82142	1.9693299999999998	2.11724	0.0191173	0.0110335	0.108861	0.0927187
chr19	9426210	9426310	7132470	0	-	0.52	(0.515,0.57]	chr19	718745	56	INTRON	INTRON	ZNF266	ENSG00000174652.20	ENST00000592904.7:ENST00000588221.5:ENST00000588933.5:ENST00000590306.5:ENST00000651268.1:ENST00000592292.5	protein_coding	protein_coding	protein_coding	protein_coding	7	64	2	1.67758	1.96929	2.261	0.0471728	0.00333544	0.168737	0.0512081
chr3	150413399	150413498	1533475	0	+	0.323232	(0.32,0.35]	chr3	159801	17	INTRON	INTRON	TSC22D2	ENSG00000196428.13	ENST00000361875.8:ENST00000688009.1:ENST00000480589.1:ENST00000466814.1:ENST00000485421.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	82	2	1.6309	1.969105	2.30731	0.0198698	0.0176772	0.120668	0.10525
chr2	110665365	110665464	1206734	0	-	0.474747	(0.44,0.476]	chr2	128694	30	INTRON	INTRON	BUB1	ENSG00000169679.15	ENST00000302759.11:ENST00000535254.6:ENST00000409311.5:ENST00000466333.5:ENST00000666956.1:ENST00000465029.5:ENST00000477481.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	16	156	2	1.96459	1.969085	1.97358	0.00318225	0.00261013	0.0519455	0.0455413
chr8	25477927	25478026	3715764	0	+	0.484848	(0.476,0.515]	chr8	345288	54	INTRON	INTRON	CDCA2	ENSG00000184661.14	ENST00000380665.3:ENST00000330560.8:ENST00000523454.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	37	2	1.61586	1.96908	2.3223	0.0567093	0.0519312	0.185107	0.159306
chr2	38329400	38329499	1098863	0	-	0.292929	(0.28,0.32]	chr2	117856	100	INTRON	INTRON	ATL2	ENSG00000119787.14	ENST00000378954.9:ENST00000406122.5:ENST00000405384.6:ENST00000402054.5:ENST00000419554.6:ENST00000651368.1:ENST00000452935.6:ENST00000449130.5:ENST00000443098.5:ENST00000456736.5:ENST00000474535.2:ENST00000472097.1:ENST00000451483.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	98	2	1.84658	1.9690150000000002	2.09145	0.0172565	0.0128582	0.104099	0.0990564
chr3	184849548	184849645	1583154	0	+	0.340206	(0.32,0.35]	chr3	163856	2	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	VPS8	ENSG00000156931.16	ENST00000287546.8:ENST00000625842.3:ENST00000436792.6:ENST00000446204.6:ENST00000452666.3:ENST00000465818.5:ENST00000469713.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	70	2	1.74135	1.9690150000000002	2.19668	0.0298264	0.021398	0.129138	0.123719
chr5	138347651	138347750	2494829	0	+	0.515152	(0.476,0.515]	chr5	238465	8	UTR3	UTR3:EXON_MRNA	FAM53C	ENSG00000120709.11	ENST00000239906.10	protein_coding	protein_coding	protein_coding	protein_coding	12	114	2	1.75592	1.968855	2.18179	0.00862128	0.00322689	0.0838846	0.0507087
chr18	9716842	9716942	6871857	0	+	0.45	(0.44,0.476]	chr18	680774	80	INTRON	INTRON	RAB31	ENSG00000168461.13	ENST00000578734.5:ENST00000578921.6:ENST00000581109.1:ENST00000583137.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	50	2	1.66462	1.96883	2.27304	0.0520247	0.0158915	0.159508	0.109464
chr17	27307767	27307865	6580677	0	+	0.581633	(0.57,1]	chr17	639629	1	UTR3	UTR3:EXON_MRNA:INTRON	WSB1	ENSG00000109046.15	ENST00000467843.6:ENST00000579733.5:ENST00000583193.5:ENST00000262394.7:ENST00000427287.6:ENST00000581185.5:ENST00000348811.6:ENST00000584114.1:ENST00000487603.5:ENST00000583096.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	15	68	2	1.75168	1.968735	2.18579	0.00400391	0.00288792	0.0551303	0.0494641
chr3	138821219	138821319	1831365	0	-	0.41	(0.408,0.44]	chr3	184062	243	INTRON	INTRON	PIK3CB	ENSG00000051382.9	ENST00000674063.1:ENST00000477593.5:ENST00000462898.5:ENST00000483968.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	64	2	1.66945	1.9686850000000002	2.26792	0.0218479	0.0179973	0.123836	0.106756
chr1	19615876	19615974	40585	0	+	0.357143	(0.35,0.378]	chr1	4754	9	INTRON	INTRON	MICOS10	ENSG00000173436.15	ENST00000648702.1:ENST00000617872.4:ENST00000322753.7:ENST00000486890.5:ENST00000462646.5:ENST00000467029.5:ENST00000481464.5:ENST00000498642.5:ENST00000485362.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	63	2	1.49028	1.968645	2.44701	0.0590834	0.00900997	0.168067	0.0851009
chr6	170629936	170630035	3037751	0	+	0.353535	(0.35,0.378]	chr6	283177	22	INTRON	INTRON	ENSG00000287411:ENSG00000230423	ENSG00000287411.1:ENSG00000230423.3	ENST00000667394.1:ENST00000656791.1:ENST00000426839.2	lncRNA	lncRNA	lncRNA	lncRNA	12	132	2	1.75806	1.9686299999999999	2.1792	0.01179	0.00259498	0.0962115	0.0453696
chr11	86029210	86029308	5014442	0	-	0.438776	(0.408,0.44]	chr11	473014	25	INTRON	INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000630913.2:ENST00000528398.5:ENST00000356360.9:ENST00000534412.5:ENST00000531558.1:ENST00000531930.5:ENST00000532041.5:ENST00000525162.5:ENST00000528256.1:ENST00000528411.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	65	2	1.82275	1.96861	2.11447	0.0285207	0.0123226	0.12666	0.097243
chr4	68410	68500	1905442	0	+	0.344444	(0.32,0.35]	chr4	191007	7	UTR3	UTR3:EXON_MRNA:INTRON	ZNF595	ENSG00000272602.6	ENST00000608255.2:ENST00000609518.5:ENST00000509152.3:ENST00000610261.6	protein_coding	protein_coding	protein_coding	protein_coding	21	238	2	1.66892	1.9685949999999999	2.26827	0.00576199	8.63074e-4	0.068294	0.0268312
chr17	29258038	29258138	6747433	0	-	0.29	(0.28,0.32]	chr17	663218	23	UTR3	UTR3:EXON_MRNA	NUFIP2	ENSG00000108256.9	ENST00000225388.9	protein_coding	protein_coding	protein_coding	protein_coding	6	73	2	1.60333	1.9685700000000002	2.33381	0.0413158	0.0174951	0.161534	0.104863
chr2	241251288	241251385	1347900	0	-	0.43299	(0.408,0.44]	chr2	141567	4	INTRON	INTRON	HDLBP	ENSG00000115677.18	ENST00000391975.5:ENST00000427183.6:ENST00000310931.10:ENST00000391976.6:ENST00000373292.8:ENST00000498595.5:ENST00000477477.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	61	2	1.58763	1.968515	2.3494	0.0639217	0.00462504	0.177824	0.062717
chr7	105346859	105346959	3603485	0	-	0.35	(0.32,0.35]	chr7	336161	399	INTRON	INTRON	SRPK2	ENSG00000135250.17	ENST00000393651.8:ENST00000482897.5:ENST00000460391.5:ENST00000462282.5:ENST00000465112.5:ENST00000482862.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	99	2	1.47118	1.96847	2.46576	0.0345598	0.00423072	0.148144	0.0572185
chr17	20870677	20870776	6576085	0	+	0.313131	(0.28,0.32]	chr17	639372	16	INTRON	INTRON	CCDC144NL-AS1	ENSG00000233098.10	ENST00000577537.5:ENST00000692759.1:ENST00000443508.8:ENST00000692309.1:ENST00000439794.6:ENST00000417232.6:ENST00000583962.2:ENST00000582324.5:ENST00000577860.5	lncRNA	lncRNA	lncRNA	lncRNA	8	89	2	1.56729	1.9684599999999999	2.36963	0.0260617	0.0157022	0.133676	0.101453
chr16	23948923	23949022	6324890	0	+	0.454545	(0.44,0.476]	chr16	605701	552	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000498739.1	protein_coding	protein_coding	protein_coding	protein_coding	6	60	2	1.71574	1.968385	2.22103	0.045256	0.00776319	0.149888	0.0787356
chr9	98845092	98845188	4174034	0	+	0.447917	(0.44,0.476]	chr9	380397	5	INTRON	INTRON	GALNT12	ENSG00000119514.7	ENST00000375011.4	protein_coding	protein_coding	protein_coding	protein_coding	6	60	2	1.71574	1.968385	2.22103	0.045256	0.00776319	0.149888	0.0787356
chr4	122950428	122950526	2035911	0	+	0.44898	(0.44,0.476]	chr4	202340	26	INTRON	INTRON	SPATA5	ENSG00000145375.9	ENST00000675612.1:ENST00000274008.5:ENST00000674886.1:ENST00000422835.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	51	2	1.85904	1.9683199999999998	2.0776	0.029889	0.0292951	0.141862	0.129138
chr5	140483554	140483651	2503659	0	+	0.474227	(0.44,0.476]	chr5	239230	5	INTRON	INTRON	ANKHD1	ENSG00000131503.21	ENST00000297183.10:ENST00000360839.7:ENST00000421134.5:ENST00000246149.10:ENST00000412116.5	protein_coding	protein_coding	protein_coding	protein_coding	5	51	2	1.85904	1.9683199999999998	2.0776	0.029889	0.0292951	0.141862	0.129138
chr1	235431104	235431204	340324	0	+	0.4	(0.378,0.408]	chr1	39596	3	SS5_PROX	SS5_PROX:INTRON	TBCE	ENSG00000285053.1:ENSG00000284770.2	ENST00000644055.1:ENST00000645655.1:ENST00000647428.1:ENST00000643418.1:ENST00000646624.1:ENST00000647186.1:ENST00000646528.1:ENST00000645351.1:ENST00000643410.1:ENST00000645205.1:ENST00000645836.1:ENST00000642503.1:ENST00000646281.1:ENST00000644680.1:ENST00000645578.1:ENST00000642431.1:ENST00000644604.1:ENST00000651186.1:ENST00000643125.1:ENST00000406207.5:ENST00000642463.1:ENST00000645899.1:ENST00000647233.1:ENST00000644578.1:ENST00000647418.1:ENST00000645372.1:ENST00000645582.1:ENST00000643994.1:ENST00000642610.2:ENST00000644037.1:ENST00000646463.1:ENST00000366601.8:ENST00000643524.1:ENST00000646536.1:ENST00000643142.1:ENST00000644838.1:ENST00000646286.1:ENST00000646186.1:ENST00000643615.1:ENST00000543662.4:ENST00000646848.1:ENST00000647332.1:ENST00000645551.1:ENST00000646821.1:ENST00000472011.6:ENST00000643238.1:ENST00000646104.1:ENST00000645662.1:ENST00000643993.1:ENST00000645964.1:ENST00000642339.1:ENST00000644217.1:ENST00000642372.1:ENST00000644265.1:ENST00000482230.6:ENST00000644910.1:ENST00000461651.1:ENST00000646842.1:ENST00000647322.1:ENST00000646495.1:ENST00000644126.1:ENST00000643487.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	43	2	1.76032	1.9682	2.17608	0.0721577	0.0218783	0.187433	0.123836
chr11	66789069	66789167	4811792	0	+	0.397959	(0.378,0.408]	chr11	447962	4	INTRON	INTRON	C11orf80	ENSG00000173715.18	ENST00000524551.5:ENST00000525908.6:ENST00000540737.7:ENST00000527634.5:ENST00000527368.5:ENST00000531400.6:ENST00000642265.1:ENST00000532565.6:ENST00000525449.6:ENST00000360962.10:ENST00000532727.5:ENST00000532089.5:ENST00000526260.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	43	2	1.76032	1.9682	2.17608	0.0721577	0.0218783	0.187433	0.123836
chr17	62028841	62028940	6810508	0	-	0.383838	(0.378,0.408]	chr17	672920	173	INTRON	INTRON	MED13	ENSG00000108510.10	ENST00000397786.7:ENST00000583958.1	protein_coding	protein_coding	protein_coding	protein_coding	6	51	2	1.54765	1.9681899999999999	2.38873	0.0458857	0.0334147	0.149888	0.146709
chr6	42207102	42207201	3095338	0	-	0.323232	(0.32,0.35]	chr6	289537	4	UTR3	UTR3:EXON_MRNA	MRPS10	ENSG00000048544.6	ENST00000053468.4	protein_coding	protein_coding	protein_coding	protein_coding	7	81	2	1.46414	1.96817	2.4722	0.065059	0.00307237	0.179599	0.0509893
chr1	16618724	16618819	383551	0	-	0.421053	(0.408,0.44]	chr1	45153	6	EXON_LNCRNA	EXON_LNCRNA	CROCCP2	ENSG00000215908.10	ENST00000639481.1:ENST00000639594.1:ENST00000640476.1:ENST00000639456.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	9	88	2	1.9279	1.9681600000000001	2.00842	0.0108512	0.00807087	0.0873034	0.0806514
chr2	235497746	235497846	1041372	0	+	0.48	(0.476,0.515]	chr2	111217	25	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	83	2	1.37743	1.968135	2.55884	0.0477443	0.00186081	0.153019	0.039946
chr2	9613757	9613857	1064809	0	-	0.39	(0.378,0.408]	chr2	113598	219	INTRON	INTRON	YWHAQ	ENSG00000134308.14	ENST00000238081.8:ENST00000381844.8:ENST00000474715.1:ENST00000446619.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	43	2	1.8252	1.968115	2.11103	0.0619563	0.0266911	0.174514	0.134419
chr21	9117775	9117875	7426517	0	-	0.5	(0.476,0.515]	chr21	757579	295	INTRON	INTRON	TEKT4P2	ENSG00000188681.12	ENST00000690061.1:ENST00000689141.1:ENST00000688310.1:ENST00000687537.1:ENST00000690096.1:ENST00000687888.1:ENST00000690389.1:ENST00000684989.1:ENST00000416067.6:ENST00000693307.1:ENST00000692383.1:ENST00000685666.1:ENST00000688451.1:ENST00000691190.1:ENST00000685532.1:ENST00000687488.1:ENST00000690713.1:ENST00000691834.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	6	57	2	1.48023	1.968105	2.45598	0.0559072	0.00945755	0.18407	0.0817766
chr4	88776794	88776893	2200148	0	-	0.494949	(0.476,0.515]	chr4	215930	84	INTRON	INTRON	FAM13A	ENSG00000138640.15	ENST00000395002.6:ENST00000264344.10:ENST00000503556.5:ENST00000511976.5:ENST00000508369.5:ENST00000513837.5:ENST00000504836.5:ENST00000507352.1:ENST00000502459.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	76	2	1.44826	1.9680750000000002	2.48789	0.0482164	0.00256502	0.153146	0.0466761
chr7	151098723	151098823	3448474	0	+	0.42	(0.408,0.44]	chr7	322165	78	INTRON	INTRON	AGAP3	ENSG00000133612.19	ENST00000490097.5:ENST00000463381.5:ENST00000397238.7:ENST00000622464.4:ENST00000479901.5:ENST00000473312.5:ENST00000469901.5:ENST00000476375.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	51	2	1.78881	1.9680650000000002	2.14732	0.0370259	0.0237354	0.139194	0.129075
chr9	37187753	37187853	4118334	0	+	0.37	(0.35,0.378]	chr9	375389	8	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000461038.5:ENST00000488607.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	17	163	2	1.53981	1.9680399999999998	2.39627	0.00966103	0.00147607	0.0871847	0.0348908
chr14	102595524	102595624	5822562	0	+	0.37	(0.35,0.378]	chr14	552490	18	INTRON	INTRON	RCOR1	ENSG00000089902.10	ENST00000262241.7	protein_coding	protein_coding	protein_coding	protein_coding	12	126	2	1.68407	1.967985	2.2519	0.0148638	0.0020199	0.0989021	0.0416115
chr6	4804002	4804102	2791138	0	+	0.33	(0.32,0.35]	chr6	263598	268	INTRON	INTRON	CDYL	ENSG00000153046.18	ENST00000328908.9:ENST00000491864.1:ENST00000440139.5:ENST00000483019.1:ENST00000397588.8:ENST00000472453.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	93	2	1.94669	1.9678900000000001	1.98909	0.0154073	0.0108865	0.100659	0.0923273
chr2	62341715	62341814	790744	0	+	0.494949	(0.476,0.515]	chr2	88708	439	INTRON	INTRON	ENSG00000228541	ENSG00000228541.2	ENST00000688476.1:ENST00000689590.1:ENST00000687402.1:ENST00000687773.1	lncRNA	lncRNA	lncRNA	lncRNA	5	53	2	1.8388	1.9678849999999999	2.09697	0.0564473	0.0136924	0.184423	0.0949306
chr3	72425306	72425406	1745708	0	-	0.48	(0.476,0.515]	chr3	177368	448	INTRON	INTRON	RYBP	ENSG00000163602.12	ENST00000477973.5	protein_coding	protein_coding	protein_coding	protein_coding	7	69	2	1.79187	1.96788	2.14389	0.0362169	0.00540862	0.138959	0.066545000000000007
chr6	154745515	154745615	3001938	0	+	0.48	(0.476,0.515]	chr6	280737	31	INTRON	INTRON	SCAF8	ENSG00000213079.10	ENST00000367186.7:ENST00000417268.3:ENST00000461219.5:ENST00000367178.8:ENST00000464628.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	69	2	1.79187	1.96788	2.14389	0.0362169	0.00540862	0.138959	0.066545000000000007
chr5	104142597	104142697	2441841	0	+	0.31	(0.28,0.32]	chr5	234410	373	INTRON	INTRON	LINC02163	ENSG00000251026.2	ENST00000662211.1:ENST00000666145.1	lncRNA	lncRNA	lncRNA	lncRNA	4	54	2	1.83771	1.967825	2.09794	0.0591725	0.0340483	0.189982	0.134863
chr7	105287736	105287836	3602890	0	-	0.29	(0.28,0.32]	chr7	336144	185	INTRON	INTRON	SRPK2	ENSG00000135250.17	ENST00000393651.8:ENST00000489828.5:ENST00000482897.5:ENST00000460391.5:ENST00000462282.5:ENST00000465112.5:ENST00000482862.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	54	2	1.83771	1.967825	2.09794	0.0591725	0.0340483	0.189982	0.134863
chr11	31499294	31499394	4939138	0	-	0.46	(0.44,0.476]	chr11	462601	107	INTRON	INTRON	IMMP1L	ENSG00000148950.11	ENST00000532287.6:ENST00000534812.5:ENST00000526776.5:ENST00000278200.5:ENST00000648582.1:ENST00000533642.1:ENST00000527184.5:ENST00000528161.5:ENST00000532624.5:ENST00000529749.5:ENST00000530023.5:ENST00000531693.1:ENST00000532668.1:ENST00000533921.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	90	2	1.29601	1.9678149999999999	2.63962	0.0518099	0.00126329	0.159306	0.0329641
chr3	177075946	177076046	1871216	0	-	0.38	(0.378,0.408]	chr3	187367	106	INTRON	INTRON	TBL1XR1	ENSG00000177565.18	ENST00000457928.7:ENST00000430069.5:ENST00000673974.1:ENST00000631253.2:ENST00000352800.10:ENST00000422442.6:ENST00000428970.5:ENST00000424913.5:ENST00000437738.5:ENST00000431421.5:ENST00000635794.1:ENST00000630796.2:ENST00000450267.5:ENST00000630833.2:ENST00000431674.5:ENST00000422066.5:ENST00000443315.5:ENST00000627825.2:ENST00000427349.5:ENST00000413084.5:ENST00000637137.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	60	2	1.93153	1.967755	2.00398	0.0393906	0.0127237	0.143072	0.0986314
chr1	168010586	168010685	249238	0	+	0.212121	[0,0.28]	chr1	29602	54	INTRON	INTRON	DCAF6	ENSG00000143164.16	ENST00000432587.6:ENST00000367843.7:ENST00000470721.5:ENST00000367840.4:ENST00000312263.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	73	2	1.94204	1.9677449999999999	1.99345	0.0544139	0.0211881	0.164972	0.123133
chr12	116196275	116196375	5424734	0	-	0.43	(0.408,0.44]	chr12	518271	151	INTRON	INTRON	MED13L	ENSG00000123066.9	ENST00000281928.9:ENST00000650226.1:ENST00000548743.2:ENST00000647567.1:ENST00000551197.2	protein_coding	protein_coding	protein_coding	protein_coding	9	75	2	1.36246	1.967705	2.57295	0.0386802	0.00640423	0.159946	0.0694534
chr1	85257771	85257871	497318	0	-	0.49	(0.476,0.515]	chr1	58952	3	SS3_PROX	SS3_PROX:INTRON	C1orf52	ENSG00000162642.14	ENST00000294661.8:ENST00000471115.6:ENST00000344356.5:ENST00000493514.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	83	2	1.5222	1.9676999999999998	2.4132	0.0276881	0.00417094	0.137011	0.0570595
chr20	49095463	49095533	7284303	0	+	0.428571	(0.408,0.44]	chr20	740936	1	INTRON	INTRON	CSE1L	ENSG00000124207.17	ENST00000396192.7:ENST00000262982.3:ENST00000469700.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	88	2	1.60905	1.9676200000000001	2.32619	0.02971	0.00239266	0.129022	0.0450826
chr16	70005656	70005756	6509097	0	-	0.39	(0.378,0.408]	chr16	630286	88	INTRON	INTRON	PDXDC2P-NPIPB14P	ENSG00000196696.13	ENST00000531894.5:ENST00000530079.5:ENST00000525331.6:ENST00000526478.5:ENST00000529089.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	9	94	2	1.63086	1.9675799999999999	2.3043	0.0252353	0.0035117	0.133676	0.0525467
chr12	55994497	55994596	5145078	0	+	0.333333	(0.32,0.35]	chr12	485958	24	UTR3	UTR3:EXON_MRNA	RAB5B	ENSG00000111540.16	ENST00000553116.5:ENST00000549505.5:ENST00000360299.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	16	143	2	1.21788	1.96756	2.71724	0.034129	0.00152305	0.146815	0.0353936
chr7	140477034	140477134	3661612	0	-	0.36	(0.35,0.378]	chr7	339948	13	INTRON	INTRON	MKRN1	ENSG00000133606.11	ENST00000255977.7:ENST00000475010.5:ENST00000495305.5:ENST00000474576.5:ENST00000480552.5:ENST00000496169.5:ENST00000443720.6:ENST00000471104.5:ENST00000467513.5:ENST00000494939.1:ENST00000498535.1:ENST00000473444.1:ENST00000475180.5:ENST00000481705.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	76	2	1.7339	1.967555	2.20121	0.0260366	0.0104157	0.133676	0.085482
chr8	42537342	42537435	3942540	0	-	0.365591	(0.35,0.378]	chr8	361333	5	INTRON	INTRON	SLC20A2	ENSG00000168575.10	ENST00000342228.7:ENST00000520179.5:ENST00000518717.1:ENST00000518384.1:ENST00000524237.1:ENST00000523340.1:ENST00000521455.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	105	2	1.72813	1.96753	2.20693	0.0132675	0.00553341	0.100167	0.0648867
chr12	11018229	11018329	5267968	0	-	0.44	(0.408,0.44]	chr12	502221	116	INTRON	INTRON	ENSG00000275778:PRH1	ENSG00000275778.2:ENSG00000231887.8	ENST00000536668.2:ENST00000535024.6:ENST00000539853.5:ENST00000541977.5:ENST00000536086.2:ENST00000534923.1:ENST00000541456.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	69	2	1.92871	1.9674999999999998	2.00629	0.0189661	0.0127189	0.108861	0.0986242
chr7	1456384	1456484	3462249	0	-	0.54	(0.515,0.57]	chr7	323713	57	INTRON	INTRON	MICALL2	ENSG00000164877.19	ENST00000472100.5:ENST00000297508.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	19	153	2	1.68031	1.96747	2.25463	0.00483424	5.6442e-4	0.0640618	0.021937
chr6	170552829	170552929	3267675	0	-	0.45	(0.44,0.476]	chr6	303385	3	SS5_PROX	SS5_PROX:INTRON	PSMB1	ENSG00000008018.9	ENST00000262193.7	protein_coding	protein_coding	protein_coding	protein_coding	8	70	2	1.64357	1.967415	2.29126	0.0177224	0.0165638	0.11319	0.102621
chr7	87845058	87845157	3566055	0	-	0.444444	(0.44,0.476]	chr7	332292	8	INTRON	INTRON	SLC25A40	ENSG00000075303.13	ENST00000341119.10:ENST00000429674.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	70	2	1.64357	1.967415	2.29126	0.0177224	0.0165638	0.11319	0.102621
chr7	105035026	105035126	3374826	0	+	0.53	(0.515,0.57]	chr7	315854	201	INTRON	INTRON	KMT2E	ENSG00000005483.22	ENST00000622386.2:ENST00000257745.9:ENST00000334884.9:ENST00000311117.8:ENST00000478990.5:ENST00000480368.5:ENST00000495267.5:ENST00000476671.5:ENST00000667857.1:ENST00000474203.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	12	95	2	1.91372	1.967395	2.02107	0.00910188	0.00285138	0.0809976	0.0494641
chr1	67210592	67210692	140820	0	+	0.4	(0.378,0.408]	chr1	15770	25	INTRON	INTRON	IL23R	ENSG00000162594.16	ENST00000637002.1:ENST00000347310.10:ENST00000425614.3:ENST00000473881.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	73	2	1.23177	1.967375	2.70298	0.0747101	0.00325723	0.192652	0.0524329
chr1	51732705	51732804	100555	0	+	0.424242	(0.408,0.44]	chr1	13276	22	INTRON	INTRON	OSBPL9	ENSG00000117859.19	ENST00000371714.5:ENST00000428468.6:ENST00000447887.5:ENST00000495776.5:ENST00000435274.6:ENST00000453295.5:ENST00000489990.5:ENST00000484890.5:ENST00000532975.5:ENST00000534040.5:ENST00000527631.5:ENST00000531828.5:ENST00000361556.9:ENST00000473207.6:ENST00000533884.5:ENST00000481937.5:ENST00000526917.5:ENST00000462759.5:ENST00000486942.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	42	2	1.93243	1.967355	2.00228	0.0441194	0.0389732	0.162255	0.143072
chr1	174000703	174000803	587828	0	-	0.39	(0.378,0.408]	chr1	70758	72	INTRON	INTRON	RC3H1	ENSG00000135870.12	ENST00000367696.7	protein_coding	protein_coding	protein_coding	protein_coding	6	60	2	1.45712	1.96732	2.47752	0.0597975	0.0092831	0.189982	0.0817766
chrX	73846429	73846529	7837988	0	-	0.47	(0.44,0.476]	chrX	799611	91	EXON_LNCRNA	EXON_LNCRNA:INTRON	XIST	ENSG00000229807.13	ENST00000650627.1:ENST00000434839.3:ENST00000429829.6:ENST00000650186.1:ENST00000635841.2:ENST00000650637.1:ENST00000648970.1	lncRNA	lncRNA	lncRNA	lncRNA	19	160	2	1.43438	1.96731	2.50024	0.0117979	7.41088e-4	0.0962115	0.0250148
chr5	66157932	66158029	2372627	0	+	0.350515	(0.35,0.378]	chr5	228660	3	EXON_MRNA	EXON_MRNA:INTRON	SREK1	ENSG00000153914.16	ENST00000521691.5:ENST00000334121.11:ENST00000520953.5:ENST00000522912.5:ENST00000524111.5:ENST00000380918.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	87	2	1.26882	1.96725	2.66568	0.0460899	0.00496487	0.16558	0.0615009
chr4	82372818	82372918	2177528	0	-	0.43	(0.408,0.44]	chr4	214153	3	SS5_PROX	SS5_PROX:INTRON	HNRNPD	ENSG00000138668.19	ENST00000313899.12:ENST00000353341.8:ENST00000352301.8:ENST00000513584.1:ENST00000509263.5:ENST00000507010.5:ENST00000515432.1:ENST00000503822.1:ENST00000509107.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	14	123	2	1.57197	1.9672450000000001	2.36252	0.0103385	0.00260554	0.0895542	0.0455058
chr22	19492140	19492239	7476958	0	+	0.484848	(0.476,0.515]	chr22	762407	78	INTRON	INTRON	CDC45	ENSG00000093009.11	ENST00000407835.6:ENST00000437685.6:ENST00000483431.5:ENST00000438587.6:ENST00000672837.1:ENST00000263201.7:ENST00000404724.7:ENST00000487669.5:ENST00000428937.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	52	2	1.91817	1.967175	2.01618	0.0459211	0.0180082	0.164984	0.106756
chr5	28870830	28870930	2330458	0	+	0.51	(0.476,0.515]	chr5	225135	603	INTRON	INTRON	LINC02109	ENSG00000259786.7	ENST00000658190.1	lncRNA	lncRNA	lncRNA	lncRNA	5	52	2	1.91817	1.967175	2.01618	0.0459211	0.0180082	0.164984	0.106756
chr15	72699235	72699334	6060603	0	+	0.464646	(0.44,0.476]	chr15	576961	8	INTRON	INTRON	BBS4	ENSG00000140463.14	ENST00000395205.6:ENST00000566400.5:ENST00000565160.5:ENST00000561914.5:ENST00000268057.9:ENST00000567279.5:ENST00000566938.5:ENST00000569440.5:ENST00000563600.5:ENST00000562084.5:ENST00000569338.5:ENST00000566829.1:ENST00000564239.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	42	2	1.85146	1.9671150000000002	2.08277	0.0545846	0.0309998	0.182529	0.13151
chr5	62415425	62415523	2363026	0	+	0.459184	(0.44,0.476]	chr5	227840	16	INTRON	INTRON	IPO11	ENSG00000086200.17	ENST00000514647.5:ENST00000424533.5:ENST00000505902.5:ENST00000325324.11:ENST00000506200.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	42	2	1.85146	1.9671150000000002	2.08277	0.0545846	0.0309998	0.182529	0.13151
chr12	50987351	50987449	5324368	0	-	0.469388	(0.44,0.476]	chr12	507639	15	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	SLC11A2	ENSG00000110911.17	ENST00000551215.5:ENST00000547688.7:ENST00000644495.1:ENST00000643884.1:ENST00000546636.5:ENST00000547198.5:ENST00000646264.1:ENST00000394904.9:ENST00000262052.9:ENST00000550782.5:ENST00000643123.1:ENST00000646740.1:ENST00000642227.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	69	2	1.81283	1.967095	2.12136	0.0343005	0.00591413	0.135641	0.0694038
chr12	122525190	122525286	5442245	0	-	0.520833	(0.515,0.57]	chr12	520598	16	INTRON	INTRON	RSRC2	ENSG00000111011.18	ENST00000331738.12:ENST00000532695.5:ENST00000433877.6:ENST00000525335.6:ENST00000344591.8:ENST00000527399.3:ENST00000527796.6:ENST00000526560.6:ENST00000527461.5:ENST00000525387.5:ENST00000528279.1:ENST00000525570.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	12	100	2	1.95538	1.96707	1.97876	0.00610685	0.00361448	0.0706941	0.0533855
chr5	168563388	168563488	2770557	0	-	0.38	(0.378,0.408]	chr5	260730	1	SS5_PROX	SS5_PROX:INTRON	PANK3	ENSG00000120137.7	ENST00000239231.7:ENST00000520504.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	69	2	1.94681	1.96704	1.98727	0.0457723	0.00639052	0.149888	0.0726555
chr4	126619890	126619990	2236908	0	-	0.37	(0.35,0.378]	chr4	219023	1544	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	8	77	2	1.69756	1.967035	2.23651	0.020879	0.0149371	0.111766	0.107462
chr21	34870866	34870966	7447093	0	-	0.53	(0.515,0.57]	chr21	759849	109	INTRON	INTRON	RUNX1	ENSG00000159216.19	ENST00000300305.7:ENST00000675419.1:ENST00000437180.5:ENST00000344691.8:ENST00000482318.5:ENST00000399240.5:ENST00000358356.9:ENST00000399237.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	88	2	1.62009	1.967015	2.31394	0.0153663	0.00231716	0.100447	0.0442594
chr21	34857911	34858008	7446962	0	-	0.505155	(0.476,0.515]	chr21	759843	11	INTRON	INTRON	RUNX1	ENSG00000159216.19	ENST00000300305.7:ENST00000675419.1:ENST00000437180.5:ENST00000344691.8:ENST00000482318.5:ENST00000399240.5:ENST00000358356.9:ENST00000399237.6:ENST00000467577.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	50	2	1.86492	1.9669499999999998	2.06898	0.0550347	0.0137491	0.165463	0.10247
chrX	154797355	154797455	7915530	0	-	0.33	(0.32,0.35]	chrX	806172	47	INTRON	INTRON	MPP1	ENSG00000130830.15	ENST00000369534.8:ENST00000413259.7:ENST00000439370.5:ENST00000393531.5:ENST00000453245.5:ENST00000494170.1:ENST00000462825.5:ENST00000393529.5:ENST00000475943.5:ENST00000428488.1:ENST00000417435.5:ENST00000369531.1:ENST00000471821.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	90	2	1.66735	1.966875	2.2664	0.0199969	0.0135492	0.109608	0.101363
chr16	23962715	23962815	6325028	0	+	0.3	(0.28,0.32]	chr16	605701	690	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000498739.1	protein_coding	protein_coding	protein_coding	protein_coding	5	65	2	1.79721	1.96686	2.13651	0.0408024	0.0265696	0.1451	0.134088
chr12	10699276	10699371	5265753	0	-	0.284211	(0.28,0.32]	chr12	502081	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	YBX3	ENSG00000060138.13	ENST00000228251.9:ENST00000279550.11:ENST00000540447.5:ENST00000540975.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	68	2	1.90263	1.9668450000000002	2.03106	0.0503272	0.0208123	0.17488	0.111549
chr10	133460670	133460768	4540581	0	+	0.377551	(0.35,0.378]	chr10	419129	1	INTRON	INTRON	SCART1	ENSG00000214279.13	ENST00000482993.6:ENST00000463137.5:ENST00000640237.1:ENST00000488261.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	16	148	2	1.60877	1.966765	2.32476	0.00707002	0.00343673	0.0754923	0.0517761
chr9	15489540	15489626	4235866	0	-	0.406977	(0.378,0.408]	chr9	389315	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PSIP1	ENSG00000164985.15	ENST00000380738.8:ENST00000380733.9:ENST00000380716.8:ENST00000380715.5:ENST00000397519.6:ENST00000487363.5:ENST00000463712.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	52	2	1.88729	1.966755	2.04622	0.0532327	0.0149927	0.162538	0.107704
chr12	50165122	50165221	5323154	0	-	0.575758	(0.57,1]	chr12	507529	105	INTRON	INTRON	CERS5	ENSG00000139624.14	ENST00000317551.12:ENST00000422340.6:ENST00000551697.5:ENST00000380189.8:ENST00000547787.5:ENST00000438450.6:ENST00000542320.5:ENST00000547800.2:ENST00000549389.5:ENST00000550258.5:ENST00000547455.5:ENST00000546514.1:ENST00000549942.1:ENST00000550899.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	30	2	1.79898	1.9667150000000002	2.13445	0.0241482	0.0206524	0.122348	0.12011
chr17	42199668	42199767	6771436	0	-	0.59596	(0.57,1]	chr17	666876	6	UTR3	UTR3:EXON_MRNA	STAT5B	ENSG00000173757.10	ENST00000293328.8	protein_coding	protein_coding	protein_coding	protein_coding	6	30	2	1.79898	1.9667150000000002	2.13445	0.0241482	0.0206524	0.122348	0.12011
chr19	10721943	10722043	7013808	0	+	0.58	(0.57,1]	chr19	696920	29	INTRON	INTRON	DNM2	ENSG00000079805.19	ENST00000683738.1:ENST00000682285.1:ENST00000682524.1:ENST00000355667.11:ENST00000389253.9:ENST00000585892.5:ENST00000359692.10:ENST00000408974.8:ENST00000586939.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	30	2	1.79898	1.9667150000000002	2.13445	0.0241482	0.0206524	0.122348	0.12011
chr5	126789627	126789726	2479300	0	+	0.393939	(0.378,0.408]	chr5	236699	114	INTRON	INTRON	LMNB1	ENSG00000113368.12	ENST00000460265.5:ENST00000261366.10:ENST00000504788.5:ENST00000472034.5:ENST00000492190.5:ENST00000395354.1:ENST00000463908.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	73	2	1.88716	1.9666899999999998	2.04622	0.017192	0.0149927	0.107704	0.104099
chr1	182846933	182847033	273053	0	+	0.33	(0.32,0.35]	chr1	31871	31	INTRON	INTRON	DHX9	ENSG00000135829.17	ENST00000367549.4:ENST00000483416.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	67	2	1.54741	1.966615	2.38582	0.0473733	0.0138529	0.169265	0.0953077
chr10	68461808	68461907	4639667	0	-	0.343434	(0.32,0.35]	chr10	426716	22	INTRON	INTRON	DNA2	ENSG00000138346.15	ENST00000358410.8:ENST00000551118.6:ENST00000399179.6:ENST00000399180.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	67	2	1.54741	1.966615	2.38582	0.0473733	0.0138529	0.169265	0.0953077
chr10	35569869	35569969	4426853	0	+	0.44	(0.408,0.44]	chr10	407969	8	UTR3	UTR3:EXON_MRNA	CCNY	ENSG00000108100.18	ENST00000374706.5:ENST00000374704.8:ENST00000265375.13:ENST00000339497.7	protein_coding	protein_coding	protein_coding	protein_coding	12	102	2	1.33832	1.9665949999999999	2.59487	0.0306577	0.00202403	0.143385	0.04086
chr19	2202779	2202879	6996568	0	+	0.63	(0.57,1]	chr19	693471	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	DOT1L	ENSG00000104885.19	ENST00000398665.8:ENST00000686010.1	protein_coding	protein_coding	protein_coding	protein_coding	7	36	2	1.83769	1.9665949999999999	2.0955	0.0297587	0.00622614	0.12908	0.0718276
chr16	28211467	28211567	6468463	0	-	0.71	(0.57,1]	chr16	624607	2	UTR5	UTR5:EXON_MRNA	XPO6	ENSG00000169180.12	ENST00000304658.10:ENST00000565698.5:ENST00000569951.1:ENST00000566073.1	protein_coding	protein_coding	protein_coding	protein_coding	10	49	2	1.64944	1.96657	2.2837	0.016446	0.00256797	0.102201	0.0466761
chr1	47268542	47268641	445639	0	-	0.484848	(0.476,0.515]	chr1	53995	51	INTRON	INTRON	STIL	ENSG00000123473.17	ENST00000360380.7:ENST00000371877.8:ENST00000337817.10:ENST00000682940.1:ENST00000683977.1:ENST00000682977.1:ENST00000396221.6:ENST00000684618.1:ENST00000447475.7:ENST00000418131.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	50	2	1.61586	1.96656	2.31726	0.0567093	0.015077	0.185107	0.0994339
chr8	127816227	127816327	3860260	0	+	0.48	(0.476,0.515]	chr8	355386	123	INTRON	INTRON	PVT1	ENSG00000249859.13	ENST00000667305.1:ENST00000690350.1:ENST00000653522.1:ENST00000664214.1:ENST00000664139.1:ENST00000661830.1:ENST00000657289.1:ENST00000504719.7:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000656880.1:ENST00000660200.1:ENST00000669132.1:ENST00000657211.1:ENST00000653845.1:ENST00000517525.2:ENST00000665856.1:ENST00000651587.1:ENST00000692980.1:ENST00000666353.1:ENST00000657183.1:ENST00000654324.1:ENST00000658556.1:ENST00000657693.1:ENST00000666080.1:ENST00000667539.1:ENST00000521951.1:ENST00000524165.6:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000664293.1:ENST00000657297.1:ENST00000662410.1:ENST00000670795.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000654091.1:ENST00000523328.6:ENST00000657356.1:ENST00000523427.2:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000662061.1:ENST00000667204.1:ENST00000656491.1:ENST00000667714.1:ENST00000654105.1:ENST00000665721.1:ENST00000518528.2:ENST00000669416.1:ENST00000660438.1:ENST00000661160.1:ENST00000659326.1:ENST00000665246.1:ENST00000657384.1:ENST00000666842.1:ENST00000517790.2:ENST00000522963.6:ENST00000654369.1:ENST00000661625.1:ENST00000657596.1:ENST00000664995.1:ENST00000656532.1:ENST00000656168.1:ENST00000661988.1:ENST00000657517.1:ENST00000670714.1:ENST00000669951.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000656693.1:ENST00000668123.1:ENST00000666776.1:ENST00000664299.1:ENST00000669272.1:ENST00000659912.1:ENST00000670532.1:ENST00000660896.1:ENST00000667149.1:ENST00000656396.1:ENST00000523068.2	lncRNA	lncRNA	lncRNA	lncRNA	5	50	2	1.61586	1.96656	2.31726	0.0567093	0.015077	0.185107	0.0994339
chr4	78830016	78830115	1981924	0	+	0.484848	(0.476,0.515]	chr4	198473	35	INTRON	INTRON	BMP2K	ENSG00000138756.19	ENST00000389010.7:ENST00000502613.3:ENST00000502871.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	78	2	1.86182	1.9664899999999998	2.07116	0.0178986	0.00731321	0.106365	0.076234
chr4	25789557	25789656	2119883	0	-	0.383838	(0.378,0.408]	chr4	209410	8	INTRON	INTRON	SEL1L3	ENSG00000091490.11	ENST00000264868.9:ENST00000399878.8:ENST00000502949.5	protein_coding	protein_coding	protein_coding	protein_coding	8	74	2	1.76983	1.96643	2.16303	0.0252473	0.0109303	0.12011	0.0924702
chr14	103487378	103487457	5826687	0	+	0.417722	(0.408,0.44]	chr14	552926	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA:INTRON	MARK3	ENSG00000075413.19	ENST00000678179.1:ENST00000676838.1:ENST00000677348.1:ENST00000677404.1:ENST00000676694.1:ENST00000676938.1:ENST00000678619.1:ENST00000676897.1:ENST00000677214.1:ENST00000677942.1:ENST00000676830.1:ENST00000678999.1:ENST00000677228.1:ENST00000556744.2:ENST00000677104.1:ENST00000679330.1:ENST00000560417.6:ENST00000440884.7:ENST00000677035.1:ENST00000678022.1:ENST00000677560.1:ENST00000561314.6:ENST00000429436.7:ENST00000677118.1:ENST00000676564.1:ENST00000678169.1:ENST00000678175.1:ENST00000678897.1:ENST00000678278.1:ENST00000676645.1:ENST00000677829.1:ENST00000678302.1:ENST00000677133.1:ENST00000678207.1:ENST00000677360.1:ENST00000676905.1:ENST00000678343.1:ENST00000677347.1:ENST00000678071.1:ENST00000677432.1:ENST00000678237.1:ENST00000677604.1:ENST00000676518.1:ENST00000677051.1:ENST00000677857.1:ENST00000677869.1:ENST00000416682.6:ENST00000303622.13:ENST00000216288.11:ENST00000679105.1:ENST00000553942.5:ENST00000335102.9:ENST00000678091.1:ENST00000561071.5:ENST00000676745.1:ENST00000554627.5:ENST00000559274.1:ENST00000679299.1:ENST00000678661.1:ENST00000677352.1:ENST00000676944.1:ENST00000677023.1:ENST00000678213.1:ENST00000678373.1:ENST00000679005.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	69	2	1.92319	1.9664	2.00961	0.0247322	0.00931007	0.12011	0.0855292
chr7	5604430	5604530	3272540	0	+	0.49	(0.476,0.515]	chr7	304184	4	SS5_PROX	SS5_PROX:INTRON	FSCN1	ENSG00000075618.18	ENST00000382361.8:ENST00000473330.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	91	2	1.83583	1.9664	2.09697	0.0136924	0.00607655	0.0949306	0.0704229
chr17	67193666	67193766	6825305	0	-	0.37	(0.35,0.378]	chr17	674507	3	SS5_PROX	SS5_PROX:INTRON	HELZ	ENSG00000198265.12	ENST00000358691.10:ENST00000579953.5:ENST00000580168.5:ENST00000417253.7:ENST00000580662.5	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:nonsense_mediated_decay:processed_transcript	7	75	2	1.95579	1.96638	1.97697	0.0234538	0.0109711	0.11867	0.092635
chr4	139063247	139063346	2246194	0	-	0.30303	(0.28,0.32]	chr4	219542	8	INTRON	INTRON	ELF2	ENSG00000109381.21	ENST00000394235.6:ENST00000686138.1:ENST00000379550.5:ENST00000358635.7:ENST00000379549.7:ENST00000510408.5:ENST00000512627.1:ENST00000514577.5:ENST00000504314.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	89	2	1.78733	1.966335	2.14534	0.0276087	0.0117054	0.123904	0.0962115
chr7	23350904	23351004	3502459	0	-	0.46	(0.44,0.476]	chr7	326857	2	SS5_PROX	SS5_PROX:INTRON	IGF2BP3	ENSG00000136231.14	ENST00000258729.8:ENST00000421467.6:ENST00000468263.5:ENST00000492771.5:ENST00000479504.5:ENST00000466809.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	69	2	1.4592	1.9662950000000001	2.47339	0.0342963	0.0090196	0.147255	0.080367
chr1	149609	149707	352803	0	-	0.397959	(0.378,0.408]	chr1	40806	34	EXON_LNCRNA	EXON_LNCRNA:INTRON	ENSG00000241860	ENSG00000241860.7	ENST00000484859.1:ENST00000466557.6	lncRNA	lncRNA	lncRNA	lncRNA	5	52	2	1.63458	1.9662799999999998	2.29798	0.0573057	0.0147606	0.167723	0.106702
chr19	57847901	57847999	7106010	0	+	0.408163	(0.378,0.408]	chr19	713221	18	INTRON	INTRON	ENSG00000268750	ENSG00000268750.7	ENST00000597134.5:ENST00000596498.2:ENST00000593873.6:ENST00000603271.1:ENST00000598031.1:ENST00000604231.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	52	2	1.63458	1.9662799999999998	2.29798	0.0573057	0.0147606	0.167723	0.106702
chr1	65599204	65599304	138985	0	+	0.37	(0.35,0.378]	chr1	15535	4	SS5_PROX	SS5_PROX:INTRON	LEPR	ENSG00000116678.20	ENST00000371060.7:ENST00000371059.7:ENST00000349533.11:ENST00000616738.4:ENST00000344610.12:ENST00000462765.5:ENST00000371058.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	86	2	1.77377	1.9662700000000002	2.15877	0.0180971	0.0102036	0.107237	0.089002
chr11	2963078	2963176	4891695	0	-	0.265306	[0,0.28]	chr11	458309	28	INTRON	INTRON	NAP1L4	ENSG00000205531.13	ENST00000620138.4:ENST00000380542.9:ENST00000526115.5:ENST00000492685.5:ENST00000528363.5:ENST00000532325.6:ENST00000448187.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	162	2	1.52759	1.96626	2.40493	0.0484383	9.61017e-4	0.153635	0.0285129
chr12	54286461	54286561	5143444	0	+	0.29	(0.28,0.32]	chr12	485567	20	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HNRNPA1	ENSG00000135486.19	ENST00000546500.5:ENST00000340913.11:ENST00000547566.5:ENST00000678365.1:ENST00000677220.1:ENST00000677778.1:ENST00000677840.1:ENST00000677666.1:ENST00000677061.1:ENST00000677072.1:ENST00000676661.1:ENST00000679251.1:ENST00000678199.1:ENST00000676925.1:ENST00000677832.1:ENST00000678687.1:ENST00000676528.1:ENST00000551665.1:ENST00000551803.1:ENST00000678103.1:ENST00000676855.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	22	266	2	1.90532	1.9662199999999999	2.02712	0.00533739	9.74206e-4	0.0641503	0.0287739
chr1	40389258	40389358	81599	0	+	0.42	(0.408,0.44]	chr1	10553	142	INTRON	INTRON	SMAP2	ENSG00000084070.12	ENST00000435168.6:ENST00000372718.8:ENST00000372708.5	protein_coding	protein_coding	protein_coding	protein_coding	5	50	2	1.93002	1.9661499999999998	2.00228	0.0389732	0.022095	0.143072	0.123903
chr1	207772837	207772936	305117	0	+	0.414141	(0.408,0.44]	chr1	35121	21	INTRON	INTRON	CD46	ENSG00000117335.21	ENST00000695779.1:ENST00000695777.1:ENST00000695778.1:ENST00000496723.2:ENST00000695782.1:ENST00000695781.1:ENST00000695780.1:ENST00000636114.2:ENST00000367042.6:ENST00000322875.8:ENST00000322918.9:ENST00000354848.5:ENST00000357714.5:ENST00000358170.6:ENST00000367041.5:ENST00000367047.5:ENST00000695783.1:ENST00000695784.1:ENST00000469535.5:ENST00000360212.6:ENST00000480003.5:ENST00000695786.1:ENST00000490278.2:ENST00000488596.5:ENST00000471987.1:ENST00000462968.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	50	2	1.93002	1.9661499999999998	2.00228	0.0389732	0.022095	0.143072	0.123903
chr1	213190667	213190767	312104	0	+	0.41	(0.408,0.44]	chr1	35957	138	INTRON	INTRON	RPS6KC1	ENSG00000136643.12	ENST00000615329.4:ENST00000543354.5:ENST00000614059.4:ENST00000543470.5:ENST00000366960.8:ENST00000366959.4:ENST00000490299.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	50	2	1.93002	1.9661499999999998	2.00228	0.0389732	0.022095	0.143072	0.123903
chr2	167917045	167917145	1258973	0	-	0.41	(0.408,0.44]	chr2	133340	159	INTRON	INTRON	B3GALT1-AS1	ENSG00000235335.3	ENST00000430546.2:ENST00000657553.1:ENST00000670221.1:ENST00000436982.2	lncRNA	lncRNA	lncRNA	lncRNA	5	50	2	1.93002	1.9661499999999998	2.00228	0.0389732	0.022095	0.143072	0.123903
chr18	3607317	3607413	6867435	0	+	0.447917	(0.44,0.476]	chr18	680392	9	EXON_LNCRNA	EXON_LNCRNA:SS3_PROX:INTRON	DLGAP1-AS2	ENSG00000262001.2	ENST00000572856.1:ENST00000692104.1:ENST00000687483.1:ENST00000693339.1:ENST00000689896.1:ENST00000691824.1	lncRNA	lncRNA	lncRNA	lncRNA	9	80	2	1.84951	1.96614	2.08277	0.0309998	0.00567535	0.13151	0.0678837
chr10	124780066	124780165	4712429	0	-	0.353535	(0.35,0.378]	chr10	434817	49	INTRON	INTRON	EEF1AKMT2	ENSG00000203791.15	ENST00000652548.1:ENST00000466270.5:ENST00000368836.7:ENST00000464099.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	66	2	1.95579	1.966125	1.97646	0.0234538	0.0193942	0.119831	0.11867
chr6	147220258	147220358	2988866	0	+	0.32	(0.28,0.32]	chr6	280001	138	INTRON	INTRON	STXBP5	ENSG00000164506.15	ENST00000321680.11:ENST00000367481.7:ENST00000546097.5:ENST00000367480.7	protein_coding	protein_coding	protein_coding	protein_coding	6	79	2	1.81152	1.966125	2.12073	0.034446	0.0157269	0.147767	0.101453
chr6	31837935	31838027	2843866	0	+	0.521739	(0.515,0.57]	chr6	267918	1	INTRON	INTRON	SNHG32	ENSG00000204387.14	ENST00000375640.7:ENST00000375641.6:ENST00000375635.6:ENST00000375638.7:ENST00000648677.1:ENST00000375642.6:ENST00000614363.4:ENST00000395789.5:ENST00000375633.5:ENST00000395788.3	lncRNA	lncRNA	lncRNA	lncRNA	16	135	2	1.94344	1.96612	1.9888	0.00963364	0.00125847	0.086971	0.0323778
chr16	1859313	1859411	6430225	0	-	0.520408	(0.515,0.57]	chr16	618379	10	INTRON	INTRON	MEIOB	ENSG00000162039.17	ENST00000325962.9:ENST00000470044.5:ENST00000397344.7:ENST00000496541.6:ENST00000460494.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	52	2	1.56681	1.966075	2.36534	0.064862	0.00404547	0.179394	0.0578376
chr10	69136242	69136342	4444671	0	+	0.44	(0.408,0.44]	chr10	410023	28	INTRON	INTRON	VPS26A	ENSG00000122958.15	ENST00000373382.5:ENST00000395098.5:ENST00000489656.5:ENST00000263559.11:ENST00000497564.5:ENST00000490696.5:ENST00000467852.1:ENST00000489794.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	50	2	1.81759	1.96603	2.11447	0.0316273	0.0285207	0.144405	0.12666
chr11	65435654	65435754	4805899	0	+	0.47	(0.44,0.476]	chr11	446554	130	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	51	470	2	1.89612	1.9659650000000002	2.03581	0.00108137	1.19129e-4	0.0302981	0.00933453
chr15	41752034	41752128	6007793	0	+	0.521277	(0.515,0.57]	chr15	571731	16	EXON_MRNA	EXON_MRNA:INTRON	MGA	ENSG00000174197.18	ENST00000545763.6:ENST00000570161.6:ENST00000566586.6:ENST00000219905.13:ENST00000564190.1:ENST00000566288.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	43	2	1.60221	1.96594	2.32967	0.0581855	0.0133671	0.188704	0.0946278
chr19	2327961	2328046	7115840	0	-	0.541176	(0.515,0.57]	chr19	715325	1	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	LSM7	ENSG00000130332.15	ENST00000587502.2:ENST00000585409.2:ENST00000252622.15:ENST00000585395.6:ENST00000591745.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	43	2	1.60221	1.96594	2.32967	0.0581855	0.0133671	0.188704	0.0946278
chr2	61529659	61529756	1131144	0	-	0.268041	[0,0.28]	chr2	121638	1	INTRON	INTRON	XPO1	ENSG00000082898.19	ENST00000676553.1:ENST00000677556.1:ENST00000677814.1:ENST00000676771.1:ENST00000677803.1:ENST00000677239.1:ENST00000678790.1:ENST00000677928.1:ENST00000678182.1:ENST00000677150.1:ENST00000678172.1:ENST00000678360.1:ENST00000678081.1:ENST00000676889.1:ENST00000676783.1:ENST00000679035.1:ENST00000677422.1:ENST00000677417.1:ENST00000677813.1:ENST00000676999.1:ENST00000676667.1:ENST00000678263.1:ENST00000678877.1:ENST00000677933.1:ENST00000680228.1:ENST00000401558.7:ENST00000428210.5:ENST00000677290.1:ENST00000677850.1:ENST00000451765.6:ENST00000676789.1:ENST00000678741.1:ENST00000404992.6:ENST00000406957.5:ENST00000443240.5:ENST00000420673.6:ENST00000481214.1:ENST00000495003.1:ENST00000449444.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	155	2	1.8592	1.96586	2.07252	0.0250628	0.00317496	0.12011	0.0518317
chr1	235318817	235318917	663769	0	-	0.43	(0.408,0.44]	chr1	78552	577	INTRON	INTRON	ARID4B	ENSG00000054267.22	ENST00000349213.7:ENST00000366603.6:ENST00000264183.9:ENST00000421364.5:ENST00000491632.5:ENST00000418304.1:ENST00000466653.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	44	2	1.6546400000000001	1.96581	2.27698	0.0583528	0.0329965	0.167723	0.145298
chr14	21223655	21223755	5834699	0	-	0.55	(0.515,0.57]	chr14	554424	102	INTRON	INTRON	HNRNPC	ENSG00000092199.19	ENST00000336053.10:ENST00000553300.6:ENST00000554969.5:ENST00000556142.5:ENST00000554455.5:ENST00000430246.6:ENST00000553753.5:ENST00000555309.5:ENST00000555914.5:ENST00000557442.5:ENST00000556628.5:ENST00000556513.5:ENST00000555883.5:ENST00000557201.5:ENST00000556897.5:ENST00000420743.6:ENST00000557157.5:ENST00000554539.5:ENST00000554383.5:ENST00000554417.1:ENST00000555215.5:ENST00000555137.5:ENST00000554891.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	54	2	1.54678	1.96577	2.38476	0.0324987	0.0110593	0.145164	0.0873897
chr11	2960507	2960606	4891669	0	-	0.434343	(0.408,0.44]	chr11	458309	2	INTRON	INTRON	NAP1L4	ENSG00000205531.13	ENST00000620138.4:ENST00000380542.9:ENST00000526115.5:ENST00000492685.5:ENST00000528363.5:ENST00000532325.6:ENST00000448187.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	71	2	1.71289	1.9657300000000002	2.21857	0.0209591	0.0135449	0.112046	0.101363
chr12	50405111	50405211	5136375	0	+	0.56	(0.515,0.57]	chr12	484352	19	INTRON	INTRON	LARP4	ENSG00000161813.23	ENST00000550522.5:ENST00000293618.12:ENST00000429001.7:ENST00000398473.7:ENST00000548174.5:ENST00000548697.5:ENST00000548993.5:ENST00000522085.5:ENST00000518444.5:ENST00000551886.5:ENST00000523389.5:ENST00000518561.5:ENST00000347328.9:ENST00000550260.1:ENST00000517559.5:ENST00000552445.1	protein_coding	protein_coding	protein_coding	protein_coding	7	54	2	1.44237	1.965695	2.48902	0.0456196	0.00760558	0.164236	0.0749571
chr8	31081889	31081982	3728422	0	+	0.494624	(0.476,0.515]	chr8	346570	2	INTRON	INTRON	WRN	ENSG00000165392.11	ENST00000650667.1:ENST00000298139.7:ENST00000651642.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	83	2	1.44343	1.9656600000000002	2.48789	0.0388521	0.00256502	0.143072	0.0466761
chr1	29001404	29001504	59830	0	+	0.44	(0.408,0.44]	chr1	7649	37	INTRON	INTRON	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000647918.1:ENST00000646800.1:ENST00000644342.1:ENST00000646189.1:ENST00000482464.6:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000646260.1:ENST00000373798.5:ENST00000644600.1:ENST00000649674.1:ENST00000643173.1:ENST00000343067.9:ENST00000644780.1:ENST00000650265.1:ENST00000648181.1:ENST00000643604.1:ENST00000648891.1:ENST00000373797.2:ENST00000349460.9:ENST00000645184.1:ENST00000645111.1:ENST00000643302.1:ENST00000645999.1:ENST00000642643.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	58	2	1.92871	1.9654949999999998	2.00228	0.0389732	0.0127189	0.143072	0.0986242
chr9	128188334	128188434	4357821	0	-	0.42	(0.408,0.44]	chr9	400304	4	SS3_PROX	SS3_PROX:INTRON	CIZ1	ENSG00000148337.22	ENST00000651955.1:ENST00000372938.10:ENST00000372954.5:ENST00000538431.5:ENST00000357558.9:ENST00000629610.2:ENST00000372948.7:ENST00000277465.8:ENST00000634901.1:ENST00000415526.5:ENST00000476727.6:ENST00000488559.6:ENST00000467178.5:ENST00000491954.5:ENST00000498156.5:ENST00000324544.6:ENST00000474442.1:ENST00000420484.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	58	2	1.92871	1.9654949999999998	2.00228	0.0389732	0.0127189	0.143072	0.0986242
chr1	213057107	213057207	310758	0	+	0.47	(0.44,0.476]	chr1	35901	52	INTRON	INTRON	RPS6KC1	ENSG00000136643.12	ENST00000615329.4:ENST00000543354.5:ENST00000614059.4:ENST00000543470.5:ENST00000366960.8:ENST00000366959.4	protein_coding	protein_coding	protein_coding	protein_coding	8	76	2	1.78423	1.9654449999999999	2.14666	0.0143065	0.0116436	0.104058	0.0889659
chr22	21440167	21440267	7481401	0	+	0.6	(0.57,1]	chr22	763209	191	INTRON	INTRON	HIC2	ENSG00000169635.10	ENST00000407464.7:ENST00000407598.2	protein_coding	protein_coding	protein_coding	protein_coding	7	33	2	1.42298	1.9652	2.50742	0.0510995	0.00631173	0.176696	0.0687526
chr1	223982757	223982845	643704	0	-	0.340909	(0.32,0.35]	chr1	76010	1	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GTF2IP20	ENSG00000272645.4	ENST00000634905.2:ENST00000431663.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	6	68	2	1.57443	1.96517	2.35591	0.048436	0.0128129	0.153635	0.0990564
chr12	50447799	50447898	5136815	0	+	0.50505	(0.476,0.515]	chr12	484418	58	INTRON	INTRON	LARP4	ENSG00000161813.23	ENST00000293618.12:ENST00000429001.7:ENST00000398473.7:ENST00000522085.5:ENST00000518444.5:ENST00000518561.5:ENST00000347328.9:ENST00000520064.2:ENST00000521120.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	78	2	1.75142	1.96517	2.17892	0.0259024	0.0046578	0.121522	0.0629753
chr19	5653420	5653520	7005612	0	+	0.49	(0.476,0.515]	chr19	695000	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	SAFB	ENSG00000160633.13	ENST00000589863.5:ENST00000588852.2:ENST00000292123.9:ENST00000592224.5:ENST00000454510.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	63	2	1.38864	1.965105	2.54157	0.0547008	0.00697457	0.182743	0.0718189
chr10	69390373	69390469	4446611	0	+	0.385417	(0.378,0.408]	chr10	410303	7	INTRON	INTRON	HK1	ENSG00000156515.24	ENST00000436817.6:ENST00000360289.6:ENST00000448642.6:ENST00000643399.2:ENST00000298649.8:ENST00000359426.7:ENST00000493591.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	43	2	1.88729	1.9651049999999999	2.04292	0.0532327	0.0326035	0.162538	0.145164
chr17	44043748	44043848	6778165	0	-	0.4	(0.378,0.408]	chr17	668123	31	INTRON	INTRON	LSM12	ENSG00000161654.10	ENST00000591247.6:ENST00000293406.8:ENST00000585388.2	protein_coding	protein_coding	protein_coding	protein_coding	4	43	2	1.88729	1.9651049999999999	2.04292	0.0532327	0.0326035	0.162538	0.145164
chr16	90154541	90154641	6424421	0	+	0.49	(0.476,0.515]	chr16	617209	167	INTRON	INTRON	FAM157C	ENSG00000260528.6	ENST00000568070.1	lncRNA	lncRNA	lncRNA	lncRNA	8	78	2	1.89682	1.965095	2.03337	0.0158424	0.00851546	0.101453	0.0833995
chr17	32873092	32873192	6757076	0	-	0.29	(0.28,0.32]	chr17	664079	102	INTRON	INTRON	MYO1D	ENSG00000176658.17	ENST00000318217.10:ENST00000579584.5:ENST00000583621.1	protein_coding	protein_coding	protein_coding	protein_coding	7	88	2	1.86798	1.9650249999999998	2.06207	0.0335733	0.00876132	0.134145	0.0846118
chr1	228490454	228490554	333168	0	+	0.48	(0.476,0.515]	chr1	38794	10	INTRON	INTRON	RNF187	ENSG00000168159.15	ENST00000305943.9:ENST00000482739.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	41	2	1.79693	1.964985	2.13304	0.0649782	0.024866	0.179417	0.132101
chr6	163444993	163445092	3032008	0	+	0.50505	(0.476,0.515]	chr6	282563	156	INTRON	INTRON	QKI	ENSG00000112531.17	ENST00000361758.8:ENST00000453779.6:ENST00000275262.11:ENST00000392127.6:ENST00000361752.8:ENST00000361195.6:ENST00000424802.7:ENST00000545607.5:ENST00000544436.5:ENST00000537041.5:ENST00000537124.5:ENST00000545346.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	41	2	1.79693	1.964985	2.13304	0.0649782	0.024866	0.179417	0.132101
chr9	112318667	112318766	4317811	0	-	0.515152	(0.476,0.515]	chr9	397079	204	INTRON	INTRON	PTBP3	ENSG00000119314.16	ENST00000334318.10:ENST00000458258.5:ENST00000374257.6:ENST00000374255.6:ENST00000343327.6:ENST00000487997.1:ENST00000210227.4:ENST00000450374.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	41	2	1.79693	1.964985	2.13304	0.0649782	0.024866	0.179417	0.132101
chrX	53652968	53653067	7821570	0	-	0.484848	(0.476,0.515]	chrX	798227	43	INTRON	INTRON	HUWE1	ENSG00000086758.16	ENST00000262854.11:ENST00000342160.7:ENST00000612484.4:ENST00000218328.12:ENST00000446750.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	41	2	1.79693	1.964985	2.13304	0.0649782	0.024866	0.179417	0.132101
chr3	28257437	28257536	1390703	0	+	0.262626	[0,0.28]	chr3	145636	33	INTRON	INTRON	CMC1	ENSG00000187118.14	ENST00000477739.1:ENST00000423894.5:ENST00000466830.6:ENST00000334841.10:ENST00000418849.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	142	2	1.31956	1.96497	2.61038	0.0699387	0.00102823	0.184298	0.0294094
chr2	53914788	53914887	1119991	0	-	0.515152	(0.476,0.515]	chr2	119993	43	INTRON	INTRON	PSME4	ENSG00000068878.15	ENST00000404125.6:ENST00000389993.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	68	2	1.91368	1.9649299999999998	2.01618	0.0180082	0.0135123	0.106756	0.101363
chr7	129049874	129049973	3636531	0	-	0.484848	(0.476,0.515]	chr7	338148	78	INTRON	INTRON	TNPO3	ENSG00000064419.14	ENST00000627585.2:ENST00000265388.10:ENST00000471234.5:ENST00000482320.5:ENST00000471166.1	protein_coding	protein_coding	protein_coding	protein_coding	7	68	2	1.91368	1.9649299999999998	2.01618	0.0180082	0.0135123	0.106756	0.101363
chr16	85621365	85621465	6416050	0	+	0.51	(0.476,0.515]	chr16	615481	76	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1:ENST00000405402.6:ENST00000411612.5:ENST00000253458.12:ENST00000393243.5	protein_coding	protein_coding	protein_coding	protein_coding	4	41	2	1.86492	1.964915	2.06491	0.0550347	0.0304733	0.165463	0.143385
chr17	46549059	46549158	6786422	0	-	0.444444	(0.44,0.476]	chr17	669353	2	INTRON	INTRON	ARL17A	ENSG00000185829.18	ENST00000445552.6:ENST00000622488.6:ENST00000329240.10:ENST00000573185.5	protein_coding	protein_coding	protein_coding	protein_coding	6	57	2	1.38039	1.964915	2.54944	0.0762718	0.00591346	0.195539	0.0694038
chr19	10663118	10663217	7013300	0	+	0.50505	(0.476,0.515]	chr19	696757	72	INTRON	INTRON	ILF3	ENSG00000129351.17	ENST00000449870.5:ENST00000587928.5:ENST00000407004.7:ENST00000589998.5:ENST00000589600.5:ENST00000589283.5:ENST00000590009.5:ENST00000593199.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	41	2	1.86492	1.964915	2.06491	0.0550347	0.0304733	0.165463	0.143385
chr2	61499279	61499346	1130817	0	-	0.507463	(0.476,0.515]	chr2	121578	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	XPO1	ENSG00000082898.19	ENST00000677110.1:ENST00000678113.1:ENST00000676553.1:ENST00000677556.1:ENST00000677814.1:ENST00000676771.1:ENST00000677803.1:ENST00000677239.1:ENST00000678790.1:ENST00000677928.1:ENST00000678182.1:ENST00000677150.1:ENST00000678172.1:ENST00000678360.1:ENST00000678081.1:ENST00000676889.1:ENST00000676783.1:ENST00000679035.1:ENST00000677422.1:ENST00000677417.1:ENST00000677813.1:ENST00000676999.1:ENST00000676667.1:ENST00000678263.1:ENST00000678877.1:ENST00000677933.1:ENST00000680228.1:ENST00000677289.1:ENST00000677190.1:ENST00000481073.6:ENST00000677476.1:ENST00000401558.7:ENST00000428210.5:ENST00000677290.1:ENST00000677850.1:ENST00000676778.1:ENST00000451765.6:ENST00000676789.1:ENST00000678741.1:ENST00000404992.6:ENST00000406957.5:ENST00000677157.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	41	2	1.86492	1.964915	2.06491	0.0550347	0.0304733	0.165463	0.143385
chr4	126484335	126484435	2235552	0	-	0.42	(0.408,0.44]	chr4	219023	188	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	9	88	2	1.54151	1.9647649999999999	2.38802	0.0368312	0.00178825	0.138959	0.0392749
chr14	101778229	101778329	5818660	0	+	0.33	(0.32,0.35]	chr14	551819	113	INTRON	INTRON	PPP2R5C	ENSG00000078304.20	ENST00000694906.1:ENST00000422945.6:ENST00000554442.5:ENST00000556068.5:ENST00000328724.9:ENST00000554504.1:ENST00000553890.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	70	2	1.77704	1.964735	2.15243	0.0719969	0.0057293	0.187322	0.0681402
chr3	25625964	25626059	1641756	0	-	0.368421	(0.35,0.378]	chr3	168511	8	INTRON	INTRON	TOP2B	ENSG00000077097.16	ENST00000264331.9:ENST00000435706.6:ENST00000424225.1	protein_coding	protein_coding	protein_coding	protein_coding	4	41	2	1.76773	1.964715	2.1617	0.0771502	0.0373863	0.196285	0.155878
chr4	138209892	138209992	2245503	0	-	0.38	(0.378,0.408]	chr4	219484	243	INTRON	INTRON	SLC7A11	ENSG00000151012.13	ENST00000280612.9:ENST00000509248.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	61	2	1.39434	1.9646849999999998	2.53503	0.0349817	0.0319942	0.149337	0.13174
chr4	55405631	55405731	1960687	0	+	0.39	(0.378,0.408]	chr4	196553	19	INTRON	INTRON	TMEM165	ENSG00000134851.13	ENST00000381334.10:ENST00000506198.5:ENST00000508404.5:ENST00000511710.1:ENST00000502797.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	24	237	2	1.73946	1.96462	2.18978	0.00572925	2.4391e-4	0.0657377	0.0138005
chr8	129395073	129395172	4059220	0	-	0.40404	(0.378,0.408]	chr8	369574	48	INTRON	INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1:ENST00000676273.1:ENST00000667643.1:ENST00000668791.1:ENST00000663716.1:ENST00000663572.1:ENST00000676148.1:ENST00000667962.1:ENST00000674877.1:ENST00000675316.1:ENST00000674656.1:ENST00000446592.7:ENST00000667341.1:ENST00000675186.1:ENST00000652971.1:ENST00000661447.1:ENST00000674863.1:ENST00000675498.1:ENST00000675527.1:ENST00000676108.1:ENST00000657647.1:ENST00000675589.1:ENST00000675913.1:ENST00000675109.1:ENST00000671632.1:ENST00000671311.1:ENST00000676099.1:ENST00000660652.1:ENST00000675522.1:ENST00000675183.1:ENST00000658861.1:ENST00000663991.1:ENST00000675044.1:ENST00000675435.1:ENST00000674639.1:ENST00000676069.1:ENST00000675532.1:ENST00000674762.1:ENST00000523151.6:ENST00000675948.1:ENST00000665364.1:ENST00000657251.1:ENST00000675166.1:ENST00000674883.1:ENST00000675867.1:ENST00000674580.1:ENST00000675393.1:ENST00000520048.1:ENST00000674906.1:ENST00000676030.1:ENST00000670588.1:ENST00000675072.1:ENST00000664936.1:ENST00000652914.1	lncRNA	lncRNA	lncRNA	lncRNA	4	44	2	1.81685	1.9643950000000001	2.11194	0.0597868	0.0292534	0.189982	0.128055
chr5	54286530	54286630	2620678	0	-	0.31	(0.28,0.32]	chr5	248862	3	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2:ENST00000505630.5:ENST00000505383.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	10	115	2	1.61821	1.96438	2.31055	0.0173709	0.00834688	0.112406	0.0774402
chr3	138831399	138831499	1831467	0	-	0.51	(0.476,0.515]	chr3	184062	345	INTRON	INTRON	PIK3CB	ENSG00000051382.9	ENST00000674063.1:ENST00000477593.5:ENST00000462898.5:ENST00000483968.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	68	2	1.95469	1.964355	1.97402	0.0206778	0.0115753	0.110999	0.0962115
chr12	116132108	116132208	5424090	0	-	0.45	(0.44,0.476]	chr12	518263	202	INTRON	INTRON	MED13L	ENSG00000123066.9	ENST00000281928.9:ENST00000650226.1:ENST00000548743.2:ENST00000647567.1:ENST00000551197.2	protein_coding	protein_coding	protein_coding	protein_coding	15	117	2	1.33685	1.96435	2.59185	0.0216623	0.00200767	0.123836	0.0408395
chr2	107731945	107732045	1205869	0	-	0.3	(0.28,0.32]	chr2	128532	143	INTRON	INTRON	LINC01885:ENSG00000286769	ENSG00000237880.2:ENSG00000286769.1	ENST00000654481.1:ENST00000669817.1	lncRNA	lncRNA	lncRNA	lncRNA	12	147	2	1.56192	1.964115	2.36631	0.0264715	0.00142417	0.122554	0.0347039
chr10	73735818	73735918	4453714	0	+	0.57	(0.515,0.57]	chr10	411044	2	SS5_PROX	SS5_PROX:INTRON	GLUD1P3	ENSG00000250959.3	ENST00000690102.1:ENST00000686626.1:ENST00000508551.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	6	51	2	1.8661	1.96408	2.06206	0.0274846	0.0135396	0.123904	0.101363
chr8	22101189	22101272	3711965	0	+	0.518072	(0.515,0.57]	chr8	344604	1	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	FHIP2B	ENSG00000158863.22	ENST00000289921.8:ENST00000450006.7:ENST00000477614.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	51	2	1.8661	1.96408	2.06206	0.0274846	0.0135396	0.123904	0.101363
chr21	6990815	6990915	7425928	0	-	0.3	(0.28,0.32]	chr21	757520	38	INTRON	INTRON	ENSG00000280018	ENSG00000280018.4	ENST00000623165.3	lncRNA	lncRNA	lncRNA	lncRNA	7	88	2	1.51187	1.96406	2.41625	0.0598267	0.00419958	0.169278	0.0592209
chr1	171505871	171505970	253418	0	+	0.333333	(0.32,0.35]	chr1	30096	198	INTRON	INTRON	PRRC2C	ENSG00000117523.18	ENST00000647382.2:ENST00000367742.7:ENST00000476522.5:ENST00000338920.8:ENST00000467601.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	81	2	1.50457	1.964045	2.42352	0.0309203	0.0122807	0.143443	0.091087
chr16	21906130	21906228	6462335	0	-	0.418367	(0.408,0.44]	chr16	623573	7	INTRON	INTRON	SMG1P4	ENSG00000185710.9	ENST00000523028.5:ENST00000381448.8:ENST00000517529.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	7	69	2	1.84301	1.963935	2.08486	0.0174311	0.0145898	0.112689	0.0981689
chr5	44814912	44815007	2352059	0	+	0.421053	(0.408,0.44]	chr5	226947	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	MRPS30	ENSG00000112996.11	ENST00000507110.6:ENST00000515647.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	88	2	1.81017	1.9639250000000001	2.11768	0.0217525	0.00352982	0.11491	0.0546236
chr10	73038320	73038419	4647251	0	-	0.30303	(0.28,0.32]	chr10	427500	76	INTRON	INTRON	P4HA1	ENSG00000122884.13	ENST00000394890.7:ENST00000307116.6:ENST00000373008.6:ENST00000440381.5:ENST00000263556.3	protein_coding	protein_coding	protein_coding	protein_coding	9	112	2	1.89468	1.9638749999999998	2.03307	0.019774	0.0062039	0.109608	0.0716199
chr3	185937320	185937420	1886597	0	-	0.68	(0.57,1]	chr3	188644	30	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	TRA2B	ENSG00000136527.19	ENST00000453386.7:ENST00000487615.5:ENST00000456380.5:ENST00000382191.4:ENST00000465245.1:ENST00000485530.5:ENST00000480461.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	19	92	2	1.91464	1.96386	2.01308	0.001464	0.00111645	0.0350622	0.0306806
chr15	92887177	92887273	6103550	0	+	0.333333	(0.32,0.35]	chr15	581365	3	INTRON	INTRON	CHASERR:ENSG00000279765	ENSG00000272888.8:ENSG00000279765.3	ENST00000653163.1:ENST00000557682.6:ENST00000556895.5:ENST00000554894.5:ENST00000629685.2:ENST00000554133.5:ENST00000630790.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	26	269	2	1.87848	1.963825	2.04917	0.00378933	9.83764e-4	0.0542465	0.0288428
chr1	35189482	35189582	420567	0	-	0.33	(0.32,0.35]	chr1	50677	1	SS3_PROX	SS3_PROX:INTRON	SFPQ	ENSG00000116560.12	ENST00000470472.5:ENST00000696553.1:ENST00000357214.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	96	2	1.21476	1.963725	2.71269	0.051782	0.0181461	0.159306	0.114853
chr1	31283080	31283179	413153	0	-	0.444444	(0.44,0.476]	chr1	49797	7	INTRON	INTRON	SNRNP40	ENSG00000060688.13	ENST00000263694.9:ENST00000474025.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	83	2	1.74385	1.963645	2.18344	0.0119796	0.0102102	0.0962115	0.0850389
chr2	96886756	96886855	1182092	0	-	0.59596	(0.57,1]	chr2	126720	79	INTRON	INTRON	FAM178B	ENSG00000168754.15	ENST00000393526.6:ENST00000490605.3:ENST00000470789.5:ENST00000494172.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	41	2	1.79898	1.9635950000000002	2.12821	0.0206524	0.00521663	0.122348	0.0633615
chr20	4007553	4007653	7309328	0	-	0.37	(0.35,0.378]	chr20	744300	328	INTRON	INTRON	RNF24	ENSG00000101236.17	ENST00000336095.10:ENST00000358395.11:ENST00000545616.2	protein_coding	protein_coding	protein_coding	protein_coding	7	75	2	1.60653	1.9635699999999998	2.32061	0.0427748	0.00545884	0.148082	0.0669938
chr3	183743492	183743592	1580753	0	+	0.38	(0.378,0.408]	chr3	163062	63	INTRON	INTRON	YEATS2	ENSG00000163872.16	ENST00000305135.10	protein_coding	protein_coding	protein_coding	protein_coding	8	80	2	1.90812	1.9633150000000001	2.01851	0.0264295	0.00559022	0.122506	0.0678837
chr20	47295179	47295279	7348892	0	-	0.5	(0.476,0.515]	chr20	749329	4	SS3_PROX	SS3_PROX:INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000467200.6:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000468376.2:ENST00000435836.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	83	2	1.47534	1.963205	2.45107	0.0350582	0.00301722	0.137535	0.0507519
chr21	29065505	29065605	7436969	0	-	0.37	(0.35,0.378]	chr21	758525	4	SS3_PROX	SS3_PROX:INTRON	CCT8	ENSG00000156261.13	ENST00000540844.5:ENST00000470450.5:ENST00000286788.9:ENST00000626972.2:ENST00000431234.1:ENST00000484403.5:ENST00000481059.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	45	2	1.75561	1.9632	2.17079	0.0739399	0.0225978	0.190914	0.124921
chr5	54077380	54077479	2618580	0	-	0.373737	(0.35,0.378]	chr5	248841	14	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	45	2	1.75561	1.9632	2.17079	0.0739399	0.0225978	0.190914	0.124921
chr9	99107799	99107899	4175461	0	+	0.45	(0.44,0.476]	chr9	380654	21	INTRON	INTRON	TGFBR1	ENSG00000106799.13	ENST00000547314.5:ENST00000552573.6:ENST00000374990.6:ENST00000374994.9:ENST00000552516.5:ENST00000549766.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	63	2	1.54104	1.9631150000000002	2.38519	0.0339289	0.012193	0.146815	0.0910127
chr19	10731337	10731437	7013902	0	+	0.44	(0.408,0.44]	chr19	696920	123	INTRON	INTRON	DNM2	ENSG00000079805.19	ENST00000683738.1:ENST00000682285.1:ENST00000682524.1:ENST00000355667.11:ENST00000389253.9:ENST00000585892.5:ENST00000359692.10:ENST00000408974.8:ENST00000586939.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	80	2	1.53812	1.96307	2.38802	0.0501609	0.00178825	0.156383	0.0392749
chr15	28670863	28670959	5988760	0	+	0.40625	(0.378,0.408]	chr15	569388	22	INTRON	INTRON	HERC2P9	ENSG00000206149.11	ENST00000529624.5:ENST00000530420.5:ENST00000528584.5	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript:transcribed_unprocessed_pseudogene	6	59	2	1.71374	1.96306	2.21238	0.0274158	0.0218124	0.136498	0.11491
chr3	12656953	12657052	1617361	0	-	0.40404	(0.378,0.408]	chr3	166996	75	INTRON	INTRON	RAF1	ENSG00000132155.14	ENST00000688543.1:ENST00000685348.1:ENST00000251849.9:ENST00000442415.7:ENST00000688444.1:ENST00000692093.1:ENST00000691724.1:ENST00000423275.6:ENST00000687326.1:ENST00000688803.1:ENST00000689876.1:ENST00000686455.1:ENST00000684903.1:ENST00000693312.1:ENST00000690460.1:ENST00000692773.1:ENST00000688625.1:ENST00000693664.1:ENST00000686762.1:ENST00000692311.1:ENST00000692558.1:ENST00000691779.1:ENST00000685738.1:ENST00000690397.1:ENST00000687923.1:ENST00000688269.1:ENST00000693705.1:ENST00000689097.1:ENST00000691899.1:ENST00000689914.1:ENST00000690625.1:ENST00000689389.1:ENST00000687257.1:ENST00000686409.1:ENST00000685653.1:ENST00000689540.1:ENST00000691396.1:ENST00000685437.1:ENST00000689418.1:ENST00000687940.1:ENST00000689481.1:ENST00000491290.2:ENST00000686479.1:ENST00000689033.1:ENST00000692777.1:ENST00000689226.1:ENST00000691718.1:ENST00000692959.1:ENST00000685740.1:ENST00000688753.1:ENST00000688779.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	59	2	1.71374	1.96306	2.21238	0.0274158	0.0218124	0.136498	0.11491
chr1	23327925	23328025	399424	0	-	0.39	(0.378,0.408]	chr1	47865	38	INTRON	INTRON	HNRNPR	ENSG00000125944.21	ENST00000478691.5:ENST00000302271.11:ENST00000374616.7:ENST00000374612.5:ENST00000675048.1:ENST00000606561.5:ENST00000427764.3:ENST00000463552.5:ENST00000470941.5:ENST00000476451.2	protein_coding	protein_coding	protein_coding	protein_coding	31	303	2	1.56262	1.9630349999999999	2.36345	0.00723151	6.71851e-5	0.0729826	0.00678102
chr7	158826742	158826842	3689786	0	-	0.49	(0.476,0.515]	chr7	342421	273	INTRON	INTRON	ESYT2	ENSG00000117868.18	ENST00000251527.10:ENST00000275418.13:ENST00000652148.1:ENST00000483958.5:ENST00000497111.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	115	2	1.78749	1.96302	2.13855	0.0157618	0.00140891	0.101453	0.0344604
chr16	16579289	16579389	6311655	0	+	0.35	(0.32,0.35]	chr16	604098	793	INTRON	INTRON	ENSG00000260126	ENSG00000260126.2	ENST00000567465.2	lncRNA	lncRNA	lncRNA	lncRNA	13	146	2	1.72159	1.962985	2.20438	0.0114806	0.00271026	0.0889104	0.0480766
chr22	41906047	41906144	7526757	0	+	0.546392	(0.515,0.57]	chr22	769481	5	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	SREBF2	ENSG00000198911.12	ENST00000612482.4:ENST00000361204.9:ENST00000424354.5:ENST00000491541.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	18	123	2	1.40556	1.96298	2.5204	0.0122876	9.8022e-4	0.0970118	0.0285591
chr1	32781528	32781624	415793	0	-	0.354167	(0.35,0.378]	chr1	50168	5	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	YARS1	ENSG00000134684.13	ENST00000469100.5:ENST00000373477.9:ENST00000676297.1:ENST00000674654.1:ENST00000674629.1:ENST00000675785.2:ENST00000487404.5:ENST00000478828.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	69	2	1.55918	1.962975	2.36677	0.0326427	0.0139343	0.145164	0.0957526
chr1	8793088	8793187	373539	0	-	0.434343	(0.408,0.44]	chr1	43555	1	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000656437.1:ENST00000659924.1	protein_coding	protein_coding	protein_coding	protein_coding	5	50	2	1.94273	1.9629150000000002	1.9831	0.0456237	0.018491	0.149888	0.116694
chr16	29549927	29550022	6471091	0	-	0.484211	(0.476,0.515]	chr16	625241	8	INTRON	INTRON	ENSG00000288632:SMG1P2	ENSG00000288632.1:ENSG00000205534.6	ENST00000675579.1:ENST00000566127.1	lncRNA	lncRNA	lncRNA:transcribed_unprocessed_pseudogene	lncRNA:transcribed_unprocessed_pseudogene	9	88	2	1.93124	1.9629050000000001	1.99457	0.009924	0.00916342	0.0877296	0.0812949
chr8	21955663	21955762	3711278	0	+	0.373737	(0.35,0.378]	chr8	344395	337	INTRON	INTRON	XPO7	ENSG00000130227.17	ENST00000252512.14:ENST00000521303.5:ENST00000519769.5:ENST00000518017.1:ENST00000520754.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	62	2	1.68908	1.9627949999999998	2.23651	0.0301354	0.020879	0.142482	0.111766
chr19	47195835	47195935	7084535	0	+	0.43	(0.408,0.44]	chr19	708804	152	INTRON	INTRON	SAE1	ENSG00000142230.13	ENST00000413379.7:ENST00000270225.12:ENST00000598840.5:ENST00000414294.6:ENST00000660039.1:ENST00000664120.1:ENST00000596995.1:ENST00000392776.3:ENST00000659110.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	50	2	1.75791	1.962685	2.16746	0.0378795	0.024436	0.157034	0.12011
chr7	50371879	50371978	3317381	0	+	0.414141	(0.408,0.44]	chr7	308271	23	INTRON	INTRON	IKZF1	ENSG00000185811.20	ENST00000645066.1:ENST00000331340.8:ENST00000349824.8:ENST00000343574.9:ENST00000357364.8:ENST00000440768.6:ENST00000346667.8:ENST00000615491.4:ENST00000359197.9:ENST00000439701.2:ENST00000438033.5:ENST00000462201.1:ENST00000471793.1:ENST00000426121.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	50	2	1.75791	1.962685	2.16746	0.0378795	0.024436	0.157034	0.12011
chr4	1982888	1982974	2095772	0	-	0.709302	(0.57,1]	chr4	207349	3	UTR3	UTR3:EXON_MRNA	NELFA	ENSG00000185049.16	ENST00000542778.5:ENST00000382882.9:ENST00000467661.5:ENST00000333877.8:ENST00000416258.5:ENST00000463820.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	26	2	1.79063	1.9625400000000002	2.13445	0.0356001	0.0241482	0.15159	0.12011
chr16	29519079	29519179	6470756	0	-	0.43	(0.408,0.44]	chr16	625147	132	INTRON	INTRON	ENSG00000288632	ENSG00000288632.1	ENST00000675579.1	lncRNA	lncRNA	lncRNA	lncRNA	10	90	2	1.50103	1.9625350000000001	2.42404	0.0237058	0.00413548	0.129075	0.0566868
chr9	137643264	137643363	4223716	0	+	0.232323	[0,0.28]	chr9	388158	53	INTRON	INTRON	EHMT1	ENSG00000181090.21	ENST00000462484.5:ENST00000371394.6:ENST00000630754.2:ENST00000460843.6:ENST00000626216.2:ENST00000637593.1:ENST00000629335.2:ENST00000637335.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	124	2	1.46974	1.9625249999999999	2.45531	0.0467693	0.00415834	0.151869	0.0590857
chr10	63466076	63466176	4635394	0	-	0.71	(0.57,1]	chr10	426242	2	INTRON	INTRON	JMJD1C	ENSG00000171988.20	ENST00000633035.1	protein_coding	processed_transcript	protein_coding	processed_transcript	6	32	2	1.91937	1.9625150000000002	2.00566	0.0468438	0.00889324	0.167716	0.0798039
chr10	32912624	32912723	4592233	0	-	0.484848	(0.476,0.515]	chr10	423440	1	INTRON	INTRON	ITGB1	ENSG00000150093.20	ENST00000609742.3:ENST00000678989.1:ENST00000677363.1:ENST00000302278.8:ENST00000396033.6:ENST00000423113.5:ENST00000417122.7:ENST00000676895.1:ENST00000678120.1:ENST00000676623.1:ENST00000678952.1:ENST00000677999.1:ENST00000679187.1:ENST00000678479.1:ENST00000676964.1:ENST00000488494.6:ENST00000488427.2:ENST00000678591.1:ENST00000678943.1:ENST00000437302.6:ENST00000678701.1:ENST00000678766.1:ENST00000676659.1:ENST00000677310.1:ENST00000474568.6:ENST00000676460.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	50	2	1.79187	1.9624549999999998	2.13304	0.0362169	0.024866	0.138959	0.132101
chr1	86938490	86938590	153831	0	+	0.33	(0.32,0.35]	chr1	16952	223	INTRON	INTRON	HS2ST1	ENSG00000153936.18	ENST00000370550.10:ENST00000370551.8:ENST00000687893.1:ENST00000693745.1:ENST00000689904.1:ENST00000690674.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	67	2	1.42542	1.9623549999999998	2.49929	0.0718205	0.00776612	0.187046	0.0787356
chr6	20417027	20417127	2827599	0	+	0.29	(0.28,0.32]	chr6	265575	128	INTRON	INTRON	E2F3	ENSG00000112242.16	ENST00000346618.8:ENST00000535432.2	protein_coding	protein_coding	protein_coding	protein_coding	14	157	2	1.44316	1.962345	2.48153	0.0207353	0.00231789	0.122348	0.0430358
chr2	107744145	107744245	1205991	0	-	0.19	[0,0.28]	chr2	128532	265	INTRON	INTRON	LINC01885:ENSG00000286769	ENSG00000237880.2:ENSG00000286769.1	ENST00000654481.1:ENST00000669817.1	lncRNA	lncRNA	lncRNA	lncRNA	11	157	2	1.94064	1.96233	1.98402	0.0120813	0.00732811	0.0907287	0.0763812
chr5	28857134	28857234	2330321	0	+	0.3	(0.28,0.32]	chr5	225135	466	INTRON	INTRON	LINC02109	ENSG00000259786.7	ENST00000658190.1	lncRNA	lncRNA	lncRNA	lncRNA	7	81	2	1.66498	1.9621849999999998	2.25939	0.0244852	0.021772	0.131869	0.11491
chr7	22664216	22664316	3500020	0	-	0.55	(0.515,0.57]	chr7	326678	3	SS3_PROX	SS3_PROX:INTRON	STEAP1B	ENSG00000105889.16	ENST00000650428.1:ENST00000649402.1:ENST00000414116.1	protein_coding	processed_transcript	protein_coding	processed_transcript	5	43	2	1.811	1.962065	2.11313	0.0325989	0.0256725	0.133687	0.133676
chr19	21457683	21457782	7158781	0	-	0.454545	(0.44,0.476]	chr19	723695	7	INTRON	INTRON	ENSG00000268119	ENSG00000268119.7	ENST00000596705.5:ENST00000597444.6:ENST00000594557.1:ENST00000599993.7:ENST00000600469.7:ENST00000656526.1:ENST00000663704.1:ENST00000593653.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	6	57	2	1.84134	1.9620549999999999	2.08277	0.0309998	0.0175428	0.13151	0.11319
chr8	54091844	54091943	3953778	0	-	0.454545	(0.44,0.476]	chr8	362624	257	INTRON	INTRON	LYPLA1	ENSG00000120992.18	ENST00000316963.8:ENST00000618914.4:ENST00000618741.1:ENST00000343231.10:ENST00000519272.5:ENST00000518546.5:ENST00000522007.5:ENST00000519891.5:ENST00000521352.5:ENST00000521898.5:ENST00000519926.5:ENST00000517297.5:ENST00000520896.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	57	2	1.84134	1.9620549999999999	2.08277	0.0309998	0.0175428	0.13151	0.11319
chr6	109368587	109368675	3185771	0	-	0.318182	(0.28,0.32]	chr6	296654	4	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CD164	ENSG00000135535.17	ENST00000310786.10:ENST00000413644.6:ENST00000504373.2:ENST00000415861.2:ENST00000324953.9:ENST00000275080.11:ENST00000499860.6:ENST00000512821.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	98	2	1.95608	1.96205	1.96802	0.0251578	0.00845157	0.12011	0.0828457
chr17	51112662	51112762	6796936	0	-	0.41	(0.408,0.44]	chr17	671024	326	INTRON	INTRON	SPAG9	ENSG00000008294.22	ENST00000262013.12:ENST00000505279.5:ENST00000357122.8	protein_coding	protein_coding	protein_coding	protein_coding	7	53	2	1.3378	1.96202	2.58624	0.050805	0.0273686	0.175989	0.123904
chr3	15824901	15825001	1624096	0	-	0.42	(0.408,0.44]	chr3	168034	102	INTRON	INTRON	ANKRD28	ENSG00000206560.12	ENST00000399451.6:ENST00000412318.5:ENST00000439830.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	53	2	1.3378	1.96202	2.58624	0.050805	0.0273686	0.175989	0.123904
chr19	944713	944813	6992677	0	+	0.56	(0.515,0.57]	chr19	692392	116	INTRON	INTRON	ARID3A	ENSG00000116017.11	ENST00000263620.8:ENST00000587532.5:ENST00000457152.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	90	2	1.61321	1.96198	2.31075	0.0202182	0.00124389	0.109913	0.0328153
chr21	46203342	46203442	7470608	0	-	0.59	(0.57,1]	chr21	761464	67	INTRON	INTRON	LSS	ENSG00000160285.15	ENST00000356396.8:ENST00000397728.8:ENST00000457828.6:ENST00000522411.5	protein_coding	protein_coding	protein_coding	protein_coding	17	77	2	1.1658	1.96194	2.75808	0.0393144	6.84119e-5	0.161534	0.00733072
chr3	138754355	138754454	1830691	0	-	0.525253	(0.515,0.57]	chr3	184037	112	INTRON	INTRON	PIK3CB	ENSG00000051382.9	ENST00000674063.1:ENST00000289153.6:ENST00000477593.5:ENST00000462898.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	81	2	1.47127	1.96194	2.45261	0.0333563	0.00116897	0.134145	0.0315666
chr1	90994862	90994962	502256	0	-	0.49	(0.476,0.515]	chr1	59504	121	INTRON	INTRON	ZNF644	ENSG00000122482.22	ENST00000370440.5:ENST00000337393.10:ENST00000347275.9:ENST00000361321.5:ENST00000467231.5:ENST00000498303.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	41	2	1.72558	1.961835	2.19809	0.0767648	0.020317	0.196164	0.121522
chr17	15515124	15515223	6731979	0	-	0.494949	(0.476,0.515]	chr17	660295	78	INTRON	INTRON	TVP23C-CDRT4:TVP23C	ENSG00000259024.6:ENSG00000175106.17	ENST00000522212.6:ENST00000557349.5:ENST00000481756.7:ENST00000518506.4:ENST00000225576.7:ENST00000581273.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	41	2	1.72558	1.961835	2.19809	0.0767648	0.020317	0.196164	0.121522
chr21	21166364	21166464	7380673	0	+	0.51	(0.476,0.515]	chr21	752602	1674	INTRON	INTRON	NCAM2	ENSG00000154654.15	ENST00000400546.6	protein_coding	protein_coding	protein_coding	protein_coding	4	41	2	1.72558	1.961835	2.19809	0.0767648	0.020317	0.196164	0.121522
chr15	48342277	48342376	6018923	0	+	0.323232	(0.32,0.35]	chr15	573644	3	UTR3	UTR3:EXON_MRNA	DUT	ENSG00000128951.14	ENST00000558813.5:ENST00000331200.8:ENST00000558978.5:ENST00000455976.6:ENST00000559540.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	122	2	1.61591	1.96182	2.30773	0.0277247	0.00247508	0.137011	0.0446195
chr7	129437654	129437753	3411584	0	+	0.363636	(0.35,0.378]	chr7	318888	27	INTRON	INTRON	STRIP2	ENSG00000128578.10	ENST00000249344.7:ENST00000435494.2	protein_coding	protein_coding	protein_coding	protein_coding	8	84	2	1.60301	1.9618099999999998	2.32061	0.0318236	0.00545884	0.13151	0.0669938
chr1	28920769	28920869	59018	0	+	0.47	(0.44,0.476]	chr1	7621	56	INTRON	INTRON	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000647918.1:ENST00000646800.1:ENST00000644342.1:ENST00000646189.1:ENST00000482464.6:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000646260.1:ENST00000373798.5:ENST00000644600.1:ENST00000649674.1:ENST00000643173.1:ENST00000343067.9:ENST00000644780.1:ENST00000650265.1:ENST00000648181.1:ENST00000643604.1:ENST00000648891.1:ENST00000373797.2:ENST00000349460.9:ENST00000645184.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	95	2	1.95383	1.96179	1.96975	0.0123514	0.00489311	0.0914865	0.0641889
chr7	151507039	151507139	3674797	0	-	0.47	(0.44,0.476]	chr7	341207	85	INTRON	INTRON	RHEB	ENSG00000106615.10	ENST00000262187.10:ENST00000472642.5:ENST00000478470.5:ENST00000496004.5:ENST00000470370.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	63	2	1.58453	1.96176	2.33899	0.0293513	0.0142027	0.142102	0.0959987
chr1	229517878	229517978	653348	0	-	0.28	[0,0.28]	chr1	77417	14	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ABCB10	ENSG00000135776.5	ENST00000344517.5:ENST00000498158.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	141	2	1.43856	1.961725	2.48489	0.0304026	0.00548173	0.143385	0.0648867
chr2	71332911	71332994	807020	0	+	0.337349	(0.32,0.35]	chr2	90125	2	UTR5	UTR5:EXON_MRNA:INTRON	ZNF638	ENSG00000075292.19	ENST00000494621.5:ENST00000410075.5:ENST00000466975.5:ENST00000466330.5:ENST00000437658.2:ENST00000464375.5:ENST00000475743.1:ENST00000409544.5:ENST00000455226.5:ENST00000454278.5:ENST00000264447.9:ENST00000454122.1:ENST00000417778.5:ENST00000487707.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	58	2	1.93031	1.96169	1.99307	0.04271	0.0231421	0.148082	0.126939
chr9	92031427	92031521	4285589	0	-	0.329787	(0.32,0.35]	chr9	393956	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	SPTLC1	ENSG00000090054.16	ENST00000643599.1:ENST00000642671.1:ENST00000646481.1:ENST00000689261.1:ENST00000690095.1:ENST00000646534.1:ENST00000262554.7:ENST00000687427.1:ENST00000690139.1:ENST00000687972.1:ENST00000689401.1:ENST00000686600.1:ENST00000686799.1:ENST00000644140.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	58	2	1.93031	1.96169	1.99307	0.04271	0.0231421	0.148082	0.126939
chr20	38074909	38075009	7269297	0	+	0.25	[0,0.28]	chr20	738717	44	INTRON	INTRON	RPRD1B	ENSG00000101413.12	ENST00000462548.6:ENST00000373433.9:ENST00000449186.2:ENST00000618318.1:ENST00000614670.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	54	2	1.71402	1.961645	2.20927	0.0794763	0.047753	0.19979	0.170327
chr4	150992119	150992219	2271540	0	-	0.51	(0.476,0.515]	chr4	220921	627	INTRON	INTRON	LRBA	ENSG00000198589.14	ENST00000357115.9:ENST00000651943.2:ENST00000510413.5:ENST00000651035.1:ENST00000507224.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	41	2	1.92984	1.961625	1.99341	0.0466474	0.037389	0.155878	0.151522
chr5	43453869	43453969	2614535	0	-	0.49	(0.476,0.515]	chr5	248544	1	CDS_START	CDS_START:CDS:EXON_MRNA:INTRON	TMEM267	ENSG00000151881.15	ENST00000397080.8:ENST00000500337.6:ENST00000512085.5:ENST00000511525.1:ENST00000510130.1:ENST00000506860.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	41	2	1.92984	1.961625	1.99341	0.0466474	0.037389	0.155878	0.151522
chr12	115981969	115982064	5422561	0	-	0.4	(0.378,0.408]	chr12	518169	8	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	MED13L	ENSG00000123066.9	ENST00000281928.9:ENST00000648379.1:ENST00000650226.1:ENST00000649607.1:ENST00000648737.1:ENST00000649775.1:ENST00000648825.1:ENST00000648916.1:ENST00000552340.1:ENST00000549786.2:ENST00000649146.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	59	2	1.76	1.961515	2.16303	0.0252473	0.023484	0.128531	0.12011
chr20	64259382	64259441	7302210	0	+	0.355932	(0.35,0.378]	chr20	743363	1	INTRON	INTRON	PCMTD2	ENSG00000203880.12	ENST00000299468.11:ENST00000369758.8:ENST00000308824.11:ENST00000609372.1:ENST00000610196.1:ENST00000609764.1:ENST00000609297.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	105	2	1.67493	1.96151	2.24809	0.0192907	0.00361961	0.108861	0.0554656
chr7	129050371	129050470	3636536	0	-	0.292929	(0.28,0.32]	chr7	338148	83	INTRON	INTRON	TNPO3	ENSG00000064419.14	ENST00000627585.2:ENST00000265388.10:ENST00000471234.5:ENST00000482320.5:ENST00000471166.1	protein_coding	protein_coding	protein_coding	protein_coding	9	112	2	1.56174	1.9615099999999999	2.36128	0.039921	0.0025684	0.143115	0.0466761
chr15	78897554	78897651	6069807	0	+	0.340206	(0.32,0.35]	chr15	578256	6	UTR3	UTR3:EXON_MRNA	MORF4L1	ENSG00000185787.15	ENST00000379535.8:ENST00000331268.9:ENST00000426013.7	protein_coding	protein_coding	protein_coding	protein_coding	16	157	2	1.49278	1.9614150000000001	2.43005	0.0125873	0.00245997	0.0980703	0.0446195
chr1	150268710	150268810	550885	0	-	0.61	(0.57,1]	chr1	64740	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	APH1A	ENSG00000117362.13	ENST00000414276.6:ENST00000369109.8:ENST00000360244.8:ENST00000461320.5:ENST00000236017.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	50	2	1.86974	1.9613450000000001	2.05295	0.00983148	0.00415403	0.0877296	0.0568824
chr12	45855664	45855763	5123992	0	+	0.424242	(0.408,0.44]	chr12	483375	24	INTRON	INTRON	ARID2	ENSG00000189079.17	ENST00000334344.11:ENST00000422737.6:ENST00000479608.5:ENST00000444670.5:ENST00000457135.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	57	2	1.70409	1.9613300000000002	2.21857	0.028108	0.0209591	0.137011	0.112046
chr21	34124449	34124548	7401605	0	+	0.333333	(0.32,0.35]	chr21	753976	24	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:INTRON	MRPS6	ENSG00000243927.6	ENST00000488492.5:ENST00000477091.5:ENST00000399312.3:ENST00000483977.5:ENST00000482679.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	9	91	2	1.74172	1.96132	2.18092	0.0256608	0.0100556	0.120491	0.0882152
chr5	154868192	154868292	2527775	0	+	0.38	(0.378,0.408]	chr5	241752	4	SS5_PROX	SS5_PROX:INTRON	CNOT8	ENSG00000155508.14	ENST00000523698.5:ENST00000517876.5:ENST00000520472.5:ENST00000519211.5:ENST00000522458.5:ENST00000403027.6:ENST00000521450.5:ENST00000519903.5:ENST00000517568.5:ENST00000524105.5:ENST00000285896.11:ENST00000521583.5:ENST00000520671.5:ENST00000519404.5:ENST00000521729.5:ENST00000518775.5:ENST00000522644.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	92	2	1.37524	1.9613	2.54736	0.0610755	8.3709e-4	0.172411	0.0263691
chr10	80512862	80512956	4476826	0	+	0.393617	(0.378,0.408]	chr10	412106	2	INTRON	INTRON	TSPAN14	ENSG00000108219.15	ENST00000429989.7:ENST00000481124.5:ENST00000372158.6:ENST00000372157.6:ENST00000372164.7:ENST00000341863.10:ENST00000372156.5:ENST00000616406.1	protein_coding	protein_coding	protein_coding	protein_coding	8	72	2	1.57136	1.961195	2.35103	0.0233757	0.014158	0.128037	0.0959618
chr17	81919943	81920042	6850468	0	-	0.626263	(0.57,1]	chr17	678519	18	UTR3	UTR3:EXON_MRNA:INTRON	SIRT7:MAFG	ENSG00000187531.14:ENSG00000197063.11	ENST00000572902.5:ENST00000357736.9	protein_coding	protein_coding	protein_coding	protein_coding	10	49	2	1.91668	1.96117	2.00566	0.00889324	0.0051891	0.0798039	0.0654282
chr8	27370856	27370956	3720238	0	+	0.36	(0.35,0.378]	chr8	345640	436	INTRON	INTRON	PTK2B	ENSG00000120899.18	ENST00000397501.5:ENST00000522338.5:ENST00000521164.5:ENST00000346049.10:ENST00000420218.3:ENST00000522517.5	protein_coding	protein_coding	protein_coding	protein_coding	4	46	2	1.82887	1.96109	2.09331	0.0584878	0.0315717	0.189395	0.13151
chr12	50515234	50515334	5137252	0	+	0.46	(0.44,0.476]	chr12	484468	96	INTRON	INTRON	DIP2B	ENSG00000066084.13	ENST00000301180.10:ENST00000549620.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	83	2	1.5358	1.96108	2.38636	0.0263135	0.0047296	0.133676	0.0600445
chr16	69593428	69593528	6380284	0	+	0.5	(0.476,0.515]	chr16	613167	245	INTRON	INTRON	NFAT5	ENSG00000102908.22	ENST00000426654.6:ENST00000349945.7:ENST00000354436.6:ENST00000627621.3:ENST00000650987.1:ENST00000567990.5:ENST00000567239.5:ENST00000393742.7:ENST00000565301.2:ENST00000566899.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	63	2	1.65426	1.9610750000000001	2.26789	0.0231344	0.0176567	0.126939	0.105233
chr2	231464038	231464122	1341825	0	-	0.654762	(0.57,1]	chr2	140544	5	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	NCL	ENSG00000115053.17	ENST00000322723.9:ENST00000676514.1:ENST00000678828.1:ENST00000676798.1:ENST00000678246.1:ENST00000679348.1:ENST00000417652.6:ENST00000453992.6:ENST00000678729.1:ENST00000678849.1:ENST00000678405.1:ENST00000676913.1:ENST00000678131.1:ENST00000678364.1:ENST00000676690.1:ENST00000461347.5:ENST00000356936.6:ENST00000454824.6:ENST00000677786.1:ENST00000484328.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	31	2	1.87172	1.9609900000000002	2.05026	0.0321326	0.0152293	0.145026	0.0996307
chr2	112651749	112651847	852121	0	+	0.336735	(0.32,0.35]	chr2	95574	37	INTRON	INTRON	SLC20A1	ENSG00000144136.11	ENST00000272542.8:ENST00000423633.5:ENST00000498224.5:ENST00000433924.5:ENST00000456264.5:ENST00000413135.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	143	2	1.89878	1.960915	2.02305	0.00783414	0.00397607	0.076075	0.0577472
chr14	30975794	30975894	5857367	0	-	0.35	(0.32,0.35]	chr14	556508	114	INTRON	INTRON	STRN3	ENSG00000196792.12	ENST00000355683.9:ENST00000357479.10:ENST00000555358.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	13	138	2	1.8445	1.9609050000000001	2.07731	0.00975384	0.00410272	0.0833791	0.0584086
chr7	30630355	30630454	3301814	0	+	0.343434	(0.32,0.35]	chr7	306608	18	EXON_MRNA	EXON_MRNA:INTRON	GARS1	ENSG00000106105.15	ENST00000675051.1:ENST00000470392.2:ENST00000674643.1:ENST00000675529.1:ENST00000674807.1:ENST00000675810.1:ENST00000676088.1:ENST00000674815.1:ENST00000676403.1:ENST00000485784.2:ENST00000676210.1:ENST00000389266.8:ENST00000675693.1:ENST00000676259.1:ENST00000675651.1:ENST00000674616.1:ENST00000674737.1:ENST00000675859.1:ENST00000676140.1:ENST00000674969.1:ENST00000676164.1:ENST00000675886.1:ENST00000444666.6:ENST00000675587.1:ENST00000674851.1:ENST00000675863.1:ENST00000465748.2:ENST00000496643.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	72	2	1.23259	1.9609	2.68921	0.0530143	0.0230336	0.179488	0.118056
chr1	150836993	150837090	552584	0	-	0.494845	(0.476,0.515]	chr1	64987	1	INTRON	INTRON	ARNT	ENSG00000143437.21	ENST00000358595.10:ENST00000471844.6:ENST00000354396.6:ENST00000515192.5:ENST00000505755.5:ENST00000497108.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	48	2	1.43644	1.960855	2.48527	0.047372	0.03496	0.169265	0.13747500000000001
chr2	27622241	27622339	718339	0	+	0.408163	(0.378,0.408]	chr2	83418	9	UTR3	UTR3:EXON_MRNA	ZNF512	ENSG00000243943.10	ENST00000413371.6:ENST00000416005.6:ENST00000556601.5:ENST00000379717.5:ENST00000355467.6:ENST00000488055.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	82	2	1.95026	1.96083	1.9714	0.0138007	0.0109363	0.095051	0.0924799
chr9	130768054	130768154	4214405	0	+	0.56	(0.515,0.57]	chr9	386427	532	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000393293.4	protein_coding	protein_coding	protein_coding	protein_coding	11	87	2	1.69969	1.960675	2.22166	0.00884617	0.00735516	0.079427	0.0765982
chr1	11803884	11803976	378928	0	-	0.434783	(0.408,0.44]	chr1	44489	5	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	MTHFR	ENSG00000177000.13	ENST00000376590.9:ENST00000376592.6:ENST00000376585.6:ENST00000641747.1:ENST00000641446.1:ENST00000376486.3:ENST00000641437.1:ENST00000418034.1:ENST00000431243.6:ENST00000642002.1:ENST00000413656.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	61	2	1.8749	1.960505	2.04611	0.0264246	0.016628	0.133676	0.102621
chr9	63853411	63853511	4262499	0	-	0.48	(0.476,0.515]	chr9	392235	101	INTRON	INTRON	FRG1JP	ENSG00000215548.2	ENST00000376334.3	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	7	68	2	1.54629	1.960385	2.37448	0.0484352	0.00419067	0.153635	0.0591344
chr11	93708488	93708587	4848260	0	+	0.373737	(0.35,0.378]	chr11	452162	12	INTRON	INTRON	CEP295	ENSG00000166004.15	ENST00000325212.11:ENST00000531700.5:ENST00000530425.1	protein_coding	protein_coding	protein_coding	protein_coding	4	45	2	1.87717	1.960375	2.04358	0.0555068	0.0329533	0.165463	0.145171
chr22	21420040	21420139	7481198	0	+	0.59596	(0.57,1]	chr22	763205	21	INTRON	INTRON	HIC2	ENSG00000169635.10	ENST00000407464.7	protein_coding	protein_coding	protein_coding	protein_coding	5	26	2	1.63919	1.9601099999999998	2.28103	0.05421	0.0151554	0.164887	0.108535
chr7	100883590	100883684	3365914	0	+	0.585106	(0.57,1]	chr7	315060	1	SS3_PROX	SS3_PROX:INTRON	SRRT	ENSG00000087087.20	ENST00000611405.5:ENST00000614484.4:ENST00000618262.4:ENST00000618411.4:ENST00000423692.5:ENST00000641476.1:ENST00000474896.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	26	2	1.63919	1.9601099999999998	2.28103	0.05421	0.0151554	0.164887	0.108535
chr6	17980067	17980167	3068478	0	-	0.4	(0.378,0.408]	chr6	285105	283	INTRON	INTRON	KIF13A	ENSG00000137177.20	ENST00000378814.9:ENST00000259711.11:ENST00000378826.6:ENST00000378843.6:ENST00000636847.1:ENST00000507576.1:ENST00000505588.1:ENST00000502704.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	11	110	2	1.82032	1.96009	2.09986	0.01477	0.00253099	0.0984422	0.0465056
chr4	67656184	67656284	2154003	0	-	0.41	(0.408,0.44]	chr4	212133	66	INTRON	INTRON	UBA6	ENSG00000033178.13	ENST00000322244.10	protein_coding	protein_coding	protein_coding	protein_coding	13	108	2	1.52666	1.9600749999999998	2.39349	0.0125782	0.00467273	0.0980703	0.0600108
chr8	129556782	129556882	4060854	0	-	0.33	(0.32,0.35]	chr8	369669	3	SS5_PROX	SS5_PROX:INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1:ENST00000676273.1:ENST00000667643.1:ENST00000668791.1:ENST00000663716.1:ENST00000663572.1:ENST00000676148.1:ENST00000667962.1:ENST00000674877.1:ENST00000675316.1:ENST00000674656.1:ENST00000446592.7:ENST00000667341.1:ENST00000675186.1:ENST00000652971.1:ENST00000661447.1:ENST00000674863.1:ENST00000675498.1:ENST00000675527.1:ENST00000676108.1:ENST00000657647.1:ENST00000675589.1:ENST00000675913.1:ENST00000675109.1:ENST00000671632.1:ENST00000671311.1:ENST00000676099.1:ENST00000660652.1:ENST00000675522.1:ENST00000675183.1:ENST00000675044.1:ENST00000675435.1:ENST00000674639.1:ENST00000676069.1:ENST00000675532.1:ENST00000674762.1:ENST00000523151.6:ENST00000675948.1:ENST00000665364.1:ENST00000657251.1:ENST00000675166.1:ENST00000674883.1:ENST00000675867.1:ENST00000674580.1:ENST00000675393.1:ENST00000520048.1:ENST00000674906.1:ENST00000676030.1:ENST00000670588.1:ENST00000675072.1:ENST00000664936.1:ENST00000652914.1:ENST00000657069.1:ENST00000674882.1	lncRNA	lncRNA	lncRNA	lncRNA	18	205	2	1.87939	1.959925	2.04046	0.00348181	0.00252101	0.0541309	0.0446238
chr4	39705078	39705178	1953061	0	+	0.58	(0.57,1]	chr4	195630	63	INTRON	INTRON	UBE2K	ENSG00000078140.14	ENST00000510934.5:ENST00000261427.10:ENST00000438068.6:ENST00000513231.5:ENST00000503368.5:ENST00000445950.2:ENST00000510719.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	45	2	1.89283	1.95986	2.02689	0.00863312	0.00839052	0.0823837	0.078644
chr7	129048183	129048282	3636514	0	-	0.50505	(0.476,0.515]	chr7	338148	61	INTRON	INTRON	TNPO3	ENSG00000064419.14	ENST00000627585.2:ENST00000265388.10:ENST00000471234.5:ENST00000482320.5:ENST00000471166.1	protein_coding	protein_coding	protein_coding	protein_coding	11	95	2	1.10747	1.9598049999999998	2.81214	0.0788376	5.41922e-4	0.198814	0.0211086
chr5	179615154	179615252	2779677	0	-	0.306122	(0.28,0.32]	chr5	262291	3	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HNRNPH1	ENSG00000169045.17	ENST00000329433.11:ENST00000393432.9:ENST00000356731.9:ENST00000442819.6:ENST00000502904.5:ENST00000514332.5:ENST00000515481.5:ENST00000510411.5:ENST00000510678.5:ENST00000523449.5:ENST00000524179.1:ENST00000519033.5:ENST00000521720.5:ENST00000502632.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	15	182	2	1.8692	1.9596200000000001	2.05004	0.011348	0.00172753	0.0886611	0.038417
chr22	20056013	20056089	7478101	0	+	0.578947	(0.57,1]	chr22	762666	1	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	TANGO2	ENSG00000183597.16	ENST00000401886.5:ENST00000471707.5:ENST00000420290.6:ENST00000432883.5:ENST00000434570.6:ENST00000447208.6:ENST00000456048.5:ENST00000411907.5:ENST00000398042.6:ENST00000399807.7:ENST00000450664.5:ENST00000450019.5:ENST00000327374.9:ENST00000430807.5:ENST00000401833.5:ENST00000434168.5:ENST00000444651.5:ENST00000462579.5:ENST00000485715.2:ENST00000484373.5:ENST00000490583.5:ENST00000490121.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	40	2	1.42298	1.959595	2.49621	0.0510995	0.00209832	0.176696	0.0413494
chr6	154759101	154759201	3002074	0	+	0.45	(0.44,0.476]	chr6	280737	167	INTRON	INTRON	SCAF8	ENSG00000213079.10	ENST00000367186.7:ENST00000417268.3:ENST00000461219.5:ENST00000367178.8:ENST00000464628.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	96	2	1.66481	1.959555	2.2543	0.00997526	0.00787184	0.0879541	0.076155
chr1	21150281	21150381	393364	0	-	0.26	[0,0.28]	chr1	46836	373	INTRON	INTRON	EIF4G3	ENSG00000075151.24	ENST00000374935.7:ENST00000602326.6:ENST00000685872.1:ENST00000686579.1:ENST00000688741.1:ENST00000400422.6:ENST00000634879.2:ENST00000693470.1:ENST00000685814.1:ENST00000356916.7:ENST00000682284.1:ENST00000438975.5:ENST00000411888.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	60	2	1.812	1.9594399999999998	2.10688	0.0729149	0.0307985	0.189235	0.143385
chr9	4831373	4831471	4095253	0	+	0.418367	(0.408,0.44]	chr9	373168	40	INTRON	INTRON	RCL1	ENSG00000120158.12	ENST00000381750.9:ENST00000442869.5:ENST00000473230.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	48	2	1.40381	1.959365	2.51492	0.0521927	0.0329839	0.177259	0.133816
chr16	21511232	21511332	6461469	0	-	0.32	(0.28,0.32]	chr16	623383	47	INTRON	INTRON	SMG1P3	ENSG00000180747.15	ENST00000522841.6:ENST00000437413.2:ENST00000435197.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	30	363	2	1.79226	1.9592	2.12614	0.00523796	3.55061e-4	0.0633615	0.0168803
chr10	69191766	69191865	4445189	0	+	0.323232	(0.32,0.35]	chr10	410109	1	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	SUPV3L1	ENSG00000156502.14	ENST00000359655.9:ENST00000471069.5:ENST00000483572.5:ENST00000422378.1:ENST00000478227.5:ENST00000486661.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	11	112	2	1.40348	1.9591750000000001	2.51487	0.0299484	0.00349334	0.142135	0.0523105
chr15	63552714	63552814	6042397	0	+	0.35	(0.32,0.35]	chr15	575406	76	INTRON	INTRON	USP3	ENSG00000140455.17	ENST00000540797.5:ENST00000380324.8:ENST00000561442.5:ENST00000560070.5:ENST00000557884.5:ENST00000558157.5:ENST00000561326.5:ENST00000559873.5:ENST00000559192.5:ENST00000559771.5:ENST00000268049.11:ENST00000558285.5:ENST00000559257.5:ENST00000538686.6:ENST00000559711.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	74	2	1.65179	1.959095	2.2664	0.0245569	0.0199969	0.131869	0.109608
chr17	42703556	42703647	6773822	0	-	0.307692	(0.28,0.32]	chr17	667312	5	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	EZH1	ENSG00000108799.13	ENST00000415827.6:ENST00000428826.7:ENST00000592743.5:ENST00000588897.5:ENST00000590078.5:ENST00000585893.5:ENST00000586103.5:ENST00000585912.5:ENST00000585550.5:ENST00000591330.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	113	2	1.39438	1.95906	2.52374	0.0635439	0.00122848	0.177272	0.0325799
chr6	24712642	24712739	3070659	0	-	0.360825	(0.35,0.378]	chr6	285352	34	INTRON	INTRON	C6orf62	ENSG00000112308.13	ENST00000378119.9:ENST00000378102.3	protein_coding	protein_coding	protein_coding	protein_coding	19	184	2	1.64012	1.959005	2.27789	0.00541201	0.00165985	0.066545000000000007	0.0369207
chr17	20870577	20870677	6576084	0	+	0.56	(0.515,0.57]	chr17	639372	15	INTRON	INTRON	CCDC144NL-AS1	ENSG00000233098.10	ENST00000577537.5:ENST00000692759.1:ENST00000443508.8:ENST00000692309.1:ENST00000439794.6:ENST00000417232.6:ENST00000583962.2:ENST00000582324.5:ENST00000577860.5	lncRNA	lncRNA	lncRNA	lncRNA	6	49	2	1.58964	1.959	2.32836	0.0408	0.0126662	0.1451	0.0982897
chr5	66169653	66169752	2372753	0	+	0.383838	(0.378,0.408]	chr5	228682	49	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	SREK1	ENSG00000153914.16	ENST00000334121.11:ENST00000520953.5:ENST00000522912.5:ENST00000524111.5:ENST00000380918.7:ENST00000284041.7:ENST00000520580.5:ENST00000519259.5:ENST00000523655.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	12	124	2	1.395	1.95898	2.52296	0.0467334	2.70236e-4	0.151763	0.0145843
chr8	105319854	105319954	3837253	0	+	0.5	(0.476,0.515]	chr8	354032	1	SS5_PROX	SS5_PROX:INTRON	ZFPM2	ENSG00000169946.14	ENST00000518180.1:ENST00000407775.7:ENST00000520492.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	60	2	1.58335	1.9589750000000001	2.3346	0.0640461	0.00494807	0.177882	0.0646039
chr3	47763342	47763442	1684891	0	-	0.38	(0.378,0.408]	chr3	172116	170	INTRON	INTRON	SMARCC1	ENSG00000173473.11	ENST00000254480.10:ENST00000425518.5:ENST00000454240.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	12	120	2	1.69992	1.9588750000000001	2.21783	0.0169638	0.00141252	0.104032	0.0345383
chr21	43103022	43103121	7468298	0	-	0.292929	(0.28,0.32]	chr21	761118	17	EXON_MRNA	EXON_MRNA:INTRON	U2AF1	ENSG00000160201.12	ENST00000291552.9:ENST00000380276.6:ENST00000464750.5:ENST00000475639.5:ENST00000459639.5:ENST00000486519.5:ENST00000463599.5:ENST00000496462.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	113	2	1.82574	1.95886	2.09198	0.0174786	0.00780964	0.10482	0.0788246
chr22	19491247	19491347	7476949	0	+	0.31	(0.28,0.32]	chr22	762407	69	INTRON	INTRON	CDC45	ENSG00000093009.11	ENST00000407835.6:ENST00000437685.6:ENST00000483431.5:ENST00000438587.6:ENST00000672837.1:ENST00000263201.7:ENST00000404724.7:ENST00000487669.5:ENST00000428937.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	113	2	1.82574	1.95886	2.09198	0.0174786	0.00780964	0.10482	0.0788246
chr16	2258560	2258658	6431596	0	-	0.510204	(0.476,0.515]	chr16	618786	30	EXON_MRNA	EXON_MRNA:INTRON	RNPS1	ENSG00000205937.12	ENST00000397086.6:ENST00000566458.5:ENST00000320225.10:ENST00000566397.5:ENST00000565678.5:ENST00000561718.5:ENST00000568631.5:ENST00000569598.6:ENST00000301730.12:ENST00000567147.5:ENST00000565243.2:ENST00000565870.5:ENST00000561518.5:ENST00000564311.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	60	2	1.86014	1.95864	2.05714	0.0277606	0.0156961	0.137011	0.101453
chr12	131937982	131938080	5250093	0	+	0.326531	(0.32,0.35]	chr12	499261	32	INTRON	INTRON	PUS1	ENSG00000177192.14	ENST00000443358.6:ENST00000322060.9:ENST00000376649.8:ENST00000542167.2:ENST00000538037.5:ENST00000535067.5:ENST00000537484.1	protein_coding	protein_coding	protein_coding	protein_coding	4	46	2	1.60297	1.95851	2.31405	0.0647328	0.0517107	0.179192	0.176696
chr4	126466641	126466741	2235375	0	-	0.33	(0.32,0.35]	chr4	219023	11	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	7	63	2	1.47118	1.95849	2.4458	0.0425977	0.0345598	0.148144	0.148082
chr11	73788492	73788577	4825171	0	+	0.611765	(0.57,1]	chr11	450282	1	INTRON	INTRON	MRPL48	ENSG00000175581.14	ENST00000508278.6:ENST00000310614.12:ENST00000540162.5:ENST00000544140.5:ENST00000544819.5:ENST00000497094.6:ENST00000411840.6:ENST00000398483.7:ENST00000535277.5:ENST00000542303.5:ENST00000537007.5:ENST00000543058.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	26	2	1.67986	1.958485	2.23711	0.0496395	0.0172108	0.174685	0.104099
chr15	64560342	64560442	6045087	0	+	0.33	(0.32,0.35]	chr15	575696	574	INTRON	INTRON	ZNF609	ENSG00000180357.10	ENST00000326648.5:ENST00000558680.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	89	2	1.81892	1.958425	2.09793	0.0156788	0.0134787	0.101453	0.101363
chr4	26336942	26337042	1936832	0	+	0.47	(0.44,0.476]	chr4	194354	136	INTRON	INTRON	RBPJ	ENSG00000168214.22	ENST00000512351.5:ENST00000681799.1:ENST00000681403.1:ENST00000342295.6:ENST00000512671.6:ENST00000506956.5:ENST00000345843.8:ENST00000361572.10:ENST00000514380.5:ENST00000514807.5:ENST00000348160.9:ENST00000681506.1:ENST00000509158.6:ENST00000691085.1:ENST00000692303.1:ENST00000681856.1:ENST00000513182.5:ENST00000681025.1:ENST00000681679.1:ENST00000680210.1:ENST00000355476.8:ENST00000680140.1:ENST00000511401.5:ENST00000680511.1:ENST00000510778.7:ENST00000679698.1:ENST00000679469.1:ENST00000681484.1:ENST00000505958.6:ENST00000507561.5:ENST00000514730.5:ENST00000507574.5:ENST00000514675.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	41	2	1.77101	1.95837	2.14573	0.0693975	0.0238593	0.184298	0.129075
chr20	50611504	50611604	7354636	0	-	0.52	(0.515,0.57]	chr20	750042	3	SS3_PROX	SS3_PROX:INTRON	RIPOR3	ENSG00000042062.13	ENST00000327979.8:ENST00000045083.6:ENST00000462493.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	32	2	1.67758	1.9583650000000001	2.23915	0.0596178	0.0471728	0.16883600000000001	0.168737
chr1	204534418	204534518	297602	0	+	0.29	(0.28,0.32]	chr1	34289	12	INTRON	INTRON	MDM4	ENSG00000198625.14	ENST00000367183.7:ENST00000391947.6:ENST00000454264.6:ENST00000612738.4:ENST00000614459.4:ENST00000616250.4:ENST00000367182.8:ENST00000463049.5:ENST00000470908.5:ENST00000471783.1:ENST00000367180.5:ENST00000507825.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	156	2	1.8308	1.95836	2.08592	0.00693492	0.00594568	0.0718189	0.0697639
chr3	47467538	47467637	1682774	0	-	0.454545	(0.44,0.476]	chr3	171881	7	INTRON	INTRON	SCAP	ENSG00000114650.21	ENST00000265565.10:ENST00000441517.6:ENST00000320017.10:ENST00000648151.1:ENST00000416208.5:ENST00000416847.5:ENST00000448217.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	69	2	1.83459	1.95835	2.08211	0.0198542	0.0130715	0.109608	0.0996047
chrX	154737981	154738080	7915189	0	-	0.262626	[0,0.28]	chrX	806107	213	INTRON	INTRON	GAB3	ENSG00000160219.12	ENST00000496390.5:ENST00000424127.3:ENST00000369575.7:ENST00000369568.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	106	2	1.42841	1.95827	2.48813	0.0524249	0.00953591	0.160466	0.0863913
chr3	100293092	100293192	1465895	0	+	0.33	(0.32,0.35]	chr3	153619	20	INTRON	INTRON	TBC1D23	ENSG00000036054.13	ENST00000394144.9:ENST00000344949.9:ENST00000486274.5:ENST00000475134.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	48	2	1.77704	1.958245	2.13945	0.0719969	0.0254517	0.187322	0.133676
chr7	138496391	138496491	3435002	0	+	0.34	(0.32,0.35]	chr7	319959	347	INTRON	INTRON	TRIM24	ENSG00000122779.18	ENST00000343526.9:ENST00000415680.6:ENST00000497516.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	48	2	1.77704	1.958245	2.13945	0.0719969	0.0254517	0.187322	0.133676
chr9	37120894	37120994	4117656	0	+	0.64	(0.57,1]	chr9	375356	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000322831.6:ENST00000461038.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	46	2	1.42019	1.9582000000000002	2.49621	0.0315411	0.00209832	0.144381	0.0413494
chr1	54394568	54394668	463643	0	-	0.54	(0.515,0.57]	chr1	55784	379	INTRON	INTRON	SSBP3	ENSG00000157216.16	ENST00000610401.5:ENST00000357475.9:ENST00000371319.8:ENST00000417664.7:ENST00000533946.6:ENST00000371320.8:ENST00000525990.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	67	2	1.63907	1.9580799999999998	2.27709	0.0350277	0.00275782	0.137535	0.0486216
chr7	133047684	133047783	3645545	0	-	0.373737	(0.35,0.378]	chr7	338876	113	INTRON	INTRON	CHCHD3	ENSG00000106554.13	ENST00000262570.10:ENST00000448878.6:ENST00000496427.5:ENST00000423635.5:ENST00000481152.2:ENST00000457942.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	54	2	1.82281	1.95806	2.09331	0.0316938	0.0315717	0.144635	0.13151
chr1	47289885	47289985	445861	0	-	0.41	(0.408,0.44]	chr1	54032	3	SS3_PROX	SS3_PROX:INTRON	STIL	ENSG00000123473.17	ENST00000360380.7:ENST00000371877.8:ENST00000337817.10:ENST00000683977.1:ENST00000682977.1:ENST00000396221.6:ENST00000447475.7:ENST00000436811.2:ENST00000682165.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	69	2	1.44993	1.9579	2.46587	0.0638951	0.00280622	0.177824	0.0488779
chr2	53867479	53867579	1119487	0	-	0.48	(0.476,0.515]	chr2	119860	2	INTRON	INTRON	PSME4	ENSG00000068878.15	ENST00000404125.6:ENST00000389993.7:ENST00000476586.5:ENST00000488687.5:ENST00000466539.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	102	2	1.88674	1.957815	2.02889	0.00978617	0.00482447	0.0835427	0.0639522
chr19	28491254	28491354	7166007	0	-	0.19	[0,0.28]	chr19	724189	230	INTRON	INTRON	ENSG00000283403:ENSG00000267243	ENSG00000283403.1:ENSG00000267243.6	ENST00000592347.5:ENST00000593065.5	lncRNA	lncRNA	lncRNA	lncRNA	12	169	2	1.62858	1.9578	2.28702	0.0246259	0.00250884	0.12011	0.0465025
chr1	1316255	1316355	359476	0	-	0.52	(0.515,0.57]	chr1	41630	2	EXON_LNCRNA	EXON_LNCRNA:INTRON	INTS11	ENSG00000127054.22	ENST00000540437.5:ENST00000545578.5:ENST00000620829.4:ENST00000435064.6:ENST00000323275.10:ENST00000411962.5:ENST00000462432.5:ENST00000419704.5:ENST00000458452.7:ENST00000421495.6:ENST00000532772.5:ENST00000450926.6:ENST00000527098.5:ENST00000528879.5:ENST00000531377.5:ENST00000434694.6:ENST00000488042.6:ENST00000526797.5:ENST00000526332.5:ENST00000430786.5:ENST00000527719.5:ENST00000530031.5:ENST00000526113.1:ENST00000526904.5:ENST00000525603.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	35	269	2	1.82085	1.9576850000000001	2.09452	6.36599e-4	4.52081e-4	0.0228285	0.0196769
chr2	131301654	131301754	866405	0	+	0.27	[0,0.28]	chr2	97319	1	SS3_PROX	SS3_PROX:INTRON	PLEKHB2:FAR2P4	ENSG00000115762.17:ENSG00000231431.7	ENST00000404460.5:ENST00000425399.1	protein_coding	protein_coding	protein_coding:transcribed_unprocessed_pseudogene	protein_coding:transcribed_unprocessed_pseudogene	7	93	2	1.70895	1.9576850000000001	2.20642	0.0280845	0.0229749	0.126178	0.125065
chr12	53452646	53452731	5142888	0	+	0.752941	(0.57,1]	chr12	485373	3	SS5_PROX	SS5_PROX:INTRON	PCBP2	ENSG00000197111.16	ENST00000546463.6:ENST00000437231.5:ENST00000447282.5:ENST00000359282.9:ENST00000549863.5:ENST00000359462.9:ENST00000550520.6:ENST00000552296.6	protein_coding	protein_coding	protein_coding	protein_coding	13	65	2	1.80787	1.9576600000000002	2.10745	0.0086124	0.00123383	0.0838082	0.0322271
chr19	4500204	4500301	7002508	0	+	0.525773	(0.515,0.57]	chr19	694670	1	INTRON	INTRON	HDGFL2	ENSG00000167674.15	ENST00000616600.5:ENST00000621835.4:ENST00000615225.1:ENST00000587016.5:ENST00000592417.2:ENST00000614903.1:ENST00000619255.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	51	2	1.94493	1.95764	1.97035	0.0204583	0.0195832	0.122204	0.109483
chr2	61448386	61448486	1130330	0	-	0.46	(0.44,0.476]	chr2	121499	272	INTRON	INTRON	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000453133.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	68	2	1.94723	1.95764	1.96805	0.0227424	0.0109533	0.117618	0.0925675
chrX	3872691	3872791	7747316	0	-	0.53	(0.515,0.57]	chrX	793130	45	INTRON	INTRON	ENSG00000285756	ENSG00000285756.2	ENST00000648217.1:ENST00000650456.1:ENST00000650538.1:ENST00000438107.1	lncRNA	lncRNA	lncRNA	lncRNA	6	51	2	1.94493	1.95764	1.97035	0.0204583	0.0195832	0.122204	0.109483
chr2	167900531	167900631	1258807	0	-	0.46	(0.44,0.476]	chr2	133335	4	SS5_PROX	SS5_PROX:INTRON	B3GALT1-AS1	ENSG00000235335.3	ENST00000430546.2:ENST00000657553.1:ENST00000670221.1:ENST00000436982.2	lncRNA	lncRNA	lncRNA	lncRNA	7	68	2	1.88483	1.957585	2.03034	0.0173569	0.0149825	0.107704	0.104189
chr19	2202499	2202599	6996565	0	+	0.67	(0.57,1]	chr19	693468	4	SS3_PROX	SS3_PROX:INTRON	DOT1L	ENSG00000104885.19	ENST00000398665.8:ENST00000686010.1	protein_coding	protein_coding	protein_coding	protein_coding	11	54	2	1.80956	1.9575399999999998	2.10552	0.00831365	0.00330145	0.0774402	0.0527031
chr21	39207551	39207648	7464441	0	-	0.42268	(0.408,0.44]	chr21	760385	9	INTRON	INTRON	BRWD1	ENSG00000185658.14	ENST00000333229.6:ENST00000342449.8:ENST00000446924.5:ENST00000380800.7:ENST00000424441.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	50	2	1.88062	1.957465	2.03431	0.0534548	0.0154896	0.162935	0.108998
chrX	24765431	24765530	7632431	0	+	0.50505	(0.476,0.515]	chrX	781725	161	INTRON	INTRON	POLA1	ENSG00000101868.13	ENST00000672178.1:ENST00000379068.8:ENST00000379059.7:ENST00000611764.2:ENST00000480125.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	13	122	2	1.72577	1.957255	2.18874	0.00908972	0.00255859	0.0809374	0.0466761
chr15	27160876	27160976	5984052	0	+	0.35	(0.32,0.35]	chr15	569164	1337	INTRON	INTRON	GABRG3	ENSG00000182256.13	ENST00000615808.5:ENST00000555083.5	protein_coding	protein_coding	protein_coding	protein_coding	8	90	2	1.61334	1.95722	2.3011	0.0322135	0.00617969	0.132553	0.0713552
chr10	70742849	70742948	4448038	0	+	0.444444	(0.44,0.476]	chr10	410426	13	INTRON	INTRON	ADAMTS14	ENSG00000138316.11	ENST00000373207.2:ENST00000373208.5	protein_coding	protein_coding	protein_coding	protein_coding	7	72	2	1.43625	1.9571450000000001	2.47804	0.063142	0.00325838	0.197183	0.0508595
chr3	138746174	138746274	1830609	0	-	0.42	(0.408,0.44]	chr3	184037	30	INTRON	INTRON	PIK3CB	ENSG00000051382.9	ENST00000674063.1:ENST00000289153.6:ENST00000477593.5:ENST00000462898.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	50	2	1.69566	1.957115	2.21857	0.0453922	0.0209591	0.164236	0.112046
chr8	95134631	95134731	3803001	0	+	0.42	(0.408,0.44]	chr8	352651	3	SS5_PROX	SS5_PROX:INTRON	PLEKHF2	ENSG00000175895.4	ENST00000315367.4:ENST00000519516.1	protein_coding	protein_coding	protein_coding	protein_coding	5	50	2	1.69566	1.957115	2.21857	0.0453922	0.0209591	0.164236	0.112046
chr12	130803086	130803186	5447890	0	-	0.24	[0,0.28]	chr12	521542	12	INTRON	INTRON	STX2	ENSG00000111450.14	ENST00000261653.10:ENST00000392373.7:ENST00000344271.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	70	2	1.47169	1.957055	2.44242	0.0491024	0.0479607	0.171039	0.155269
chr3	15858476	15858576	1624432	0	-	0.37	(0.35,0.378]	chr3	168034	438	INTRON	INTRON	ANKRD28	ENSG00000206560.12	ENST00000399451.6:ENST00000412318.5:ENST00000439830.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	106	2	1.6622	1.95705	2.2519	0.0263261	0.0020199	0.122221	0.0416115
chr5	53995212	53995312	2617756	0	-	0.54	(0.515,0.57]	chr5	248835	832	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	16	129	2	1.72534	1.95698	2.18862	0.00564515	0.00113408	0.0678837	0.0307488
chr11	57816700	57816798	4793711	0	+	0.377551	(0.35,0.378]	chr11	443826	5	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ENSG00000288534:CTNND1	ENSG00000288534.1:ENSG00000198561.16	ENST00000673781.1:ENST00000673810.1:ENST00000674116.1:ENST00000674060.1:ENST00000524630.5:ENST00000529919.5:ENST00000682741.1:ENST00000358694.10:ENST00000361332.8:ENST00000361391.10:ENST00000361796.9:ENST00000415361.6:ENST00000426142.6:ENST00000428599.6:ENST00000525902.5:ENST00000526357.5:ENST00000526772.5:ENST00000527467.5:ENST00000528232.5:ENST00000528621.5:ENST00000529526.5:ENST00000529873.5:ENST00000529986.5:ENST00000530094.5:ENST00000530748.5:ENST00000531014.5:ENST00000532245.5:ENST00000532463.5:ENST00000532649.5:ENST00000532787.5:ENST00000532844.5:ENST00000533667.5:ENST00000534579.5:ENST00000399050.10:ENST00000526938.5:ENST00000531007.2:ENST00000674015.1:ENST00000673826.1:ENST00000673683.1:ENST00000674106.1:ENST00000681984.1:ENST00000683906.1:ENST00000673661.1:ENST00000682621.1:ENST00000683201.1:ENST00000682974.1:ENST00000684035.1:ENST00000683510.1:ENST00000683769.1:ENST00000684704.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	12	126	2	1.76841	1.95694	2.14547	0.0137821	0.0021383	0.0949475	0.0429147
chr22	21784362	21784462	7560547	0	-	0.5	(0.476,0.515]	chr22	773360	110	INTRON	INTRON	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	26	232	2	1.77918	1.9568699999999999	2.13456	0.00158316	0.00108847	0.0367683	0.0303873
chr11	57789255	57789355	4793407	0	+	0.35	(0.32,0.35]	chr11	443727	1	SS5_PROX	SS5_PROX:INTRON	ENSG00000288534:CTNND1	ENSG00000288534.1:ENSG00000198561.16	ENST00000673781.1:ENST00000673810.1:ENST00000674116.1:ENST00000674060.1:ENST00000524630.5:ENST00000529919.5:ENST00000533189.1:ENST00000682741.1:ENST00000358694.10:ENST00000361332.8:ENST00000361391.10:ENST00000361796.9:ENST00000415361.6:ENST00000426142.6:ENST00000428599.6:ENST00000525902.5:ENST00000526357.5:ENST00000526772.5:ENST00000527467.5:ENST00000528232.5:ENST00000528621.5:ENST00000529526.5:ENST00000529873.5:ENST00000529986.5:ENST00000530094.5:ENST00000530748.5:ENST00000531014.5:ENST00000532245.5:ENST00000532463.5:ENST00000532649.5:ENST00000532787.5:ENST00000532844.5:ENST00000533667.5:ENST00000534579.5:ENST00000399050.10:ENST00000526938.5:ENST00000531007.2:ENST00000674015.1:ENST00000673826.1:ENST00000673683.1:ENST00000674106.1:ENST00000530068.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	51	2	1.68188	1.95685	2.23182	0.068598	0.031521	0.184298	0.144381
chr6	13662328	13662427	3058730	0	-	0.323232	(0.32,0.35]	chr6	284542	31	INTRON	INTRON	RANBP9	ENSG00000010017.13	ENST00000011619.6	protein_coding	protein_coding	protein_coding	protein_coding	5	51	2	1.68188	1.95685	2.23182	0.068598	0.031521	0.184298	0.144381
chr3	37268539	37268638	1396007	0	+	0.373737	(0.35,0.378]	chr3	146325	12	INTRON	INTRON	GOLGA4	ENSG00000144674.17	ENST00000435830.6:ENST00000444882.5:ENST00000356847.8:ENST00000450863.6:ENST00000361924.7:ENST00000429018.5:ENST00000431105.1:ENST00000419177.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	18	176	2	1.91656	1.9568400000000001	1.99712	0.00798081	0.00131576	0.0766064	0.0333932
chr20	3921856	3921955	7227232	0	+	0.50505	(0.476,0.515]	chr20	734522	27	INTRON	INTRON	PANK2	ENSG00000125779.24	ENST00000497424.5:ENST00000316562.9:ENST00000610179.7:ENST00000643504.2:ENST00000336066.8:ENST00000646394.1:ENST00000621507.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	65	2	1.59365	1.95683	2.32001	0.0306944	0.0136217	0.13151	0.101682
chr1	149885595	149885690	549586	0	-	0.452632	(0.44,0.476]	chr1	64526	13	UTR3	UTR3:EXON_MRNA	H2BC21	ENSG00000184678.11	ENST00000369155.4	protein_coding	protein_coding	protein_coding	protein_coding	8	71	2	1.77578	1.956785	2.13779	0.0264596	0.0105236	0.122506	0.0908969
chr7	74190706	74190806	3332394	0	+	0.53	(0.515,0.57]	chr7	310053	4	SS5_PROX	SS5_PROX:PRIMIRNA:INTRON	EIF4H:MIR590	ENSG00000106682.16:ENSG00000207741.1	ENST00000678438.1:ENST00000677998.1:ENST00000495187.2:ENST00000265753.13:ENST00000353999.6:ENST00000677570.1:ENST00000677681.1:ENST00000678815.1:ENST00000679266.1:ENST00000679287.1:ENST00000678341.1:ENST00000385008.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:primary_miRNA	15	121	2	1.81575	1.956715	2.09768	0.00527838	0.00151337	0.0635562	0.0360297
chr22	20950820	20950918	7480853	0	+	0.418367	(0.408,0.44]	chr22	763101	11	UTR3	UTR3:EXON_MRNA:INTRON	CRKL	ENSG00000099942.13	ENST00000354336.8:ENST00000411769.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	20	182	2	1.40687	1.956605	2.50634	0.0178853	1.75878e-4	0.106324	0.011551
chr2	151494628	151494728	894094	0	+	0.44	(0.408,0.44]	chr2	99070	75	INTRON	INTRON	RIF1	ENSG00000080345.18	ENST00000454583.6:ENST00000457745.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	8	78	2	1.73532	1.9565800000000002	2.17784	0.0194186	0.00916282	0.109149	0.0855292
chr7	121142241	121142341	3395190	0	+	0.4	(0.378,0.408]	chr7	317776	1	SS5_PROX	SS5_PROX:INTRON	CPED1	ENSG00000106034.18	ENST00000310396.10:ENST00000450913.6:ENST00000423795.5	protein_coding	protein_coding	protein_coding	protein_coding	14	135	2	1.15988	1.9565350000000001	2.75319	0.0627516	1.28633e-4	0.176104	0.00977207
chr17	30153608	30153706	6587759	0	+	0.377551	(0.35,0.378]	chr17	640567	31	INTRON	INTRON	NSRP1	ENSG00000126653.18	ENST00000540900.7:ENST00000612959.4:ENST00000247026.10:ENST00000577289.6:ENST00000584154.5:ENST00000394826.8:ENST00000475652.5:ENST00000584317.5:ENST00000585881.5:ENST00000467446.6:ENST00000580103.6:ENST00000581048.5:ENST00000588614.1:ENST00000589608.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	40	2	1.58862	1.956525	2.32443	0.0615516	0.0544216	0.193423	0.164972
chr3	37254675	37254775	1395868	0	+	0.5	(0.476,0.515]	chr3	146319	28	INTRON	INTRON	GOLGA4	ENSG00000144674.17	ENST00000435830.6:ENST00000444882.5:ENST00000356847.8:ENST00000450863.6:ENST00000361924.7:ENST00000429018.5:ENST00000431105.1:ENST00000419177.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	108	2	1.62493	1.956525	2.28812	0.0118751	0.00344676	0.0962115	0.0517761
chrX	74223911	74224011	7840910	0	-	0.36	(0.35,0.378]	chrX	799703	48	INTRON	INTRON	FTX	ENSG00000230590.12	ENST00000603672.5:ENST00000430772.6:ENST00000602776.6:ENST00000638681.1:ENST00000652319.1:ENST00000661133.1:ENST00000652071.1:ENST00000602812.6:ENST00000651703.1:ENST00000653018.1:ENST00000658448.1:ENST00000662240.1:ENST00000652527.1:ENST00000651451.1:ENST00000657611.1:ENST00000660481.1:ENST00000659574.1:ENST00000661084.1:ENST00000662494.1:ENST00000670936.1:ENST00000602420.6:ENST00000658203.1:ENST00000638985.1:ENST00000691187.1:ENST00000603037.2:ENST00000641360.1:ENST00000687056.1:ENST00000654870.2:ENST00000652540.1:ENST00000652331.2:ENST00000652013.1:ENST00000669263.1:ENST00000657070.1:ENST00000665069.1:ENST00000651936.1:ENST00000652496.1:ENST00000653874.2:ENST00000661335.1:ENST00000664123.1:ENST00000658439.1:ENST00000666535.1:ENST00000652970.1:ENST00000423992.3:ENST00000665313.2:ENST00000651140.1:ENST00000660100.1:ENST00000693483.1	lncRNA	lncRNA	lncRNA	lncRNA	4	40	2	1.58862	1.956525	2.32443	0.0615516	0.0544216	0.193423	0.164972
chr9	95222160	95222260	4291081	0	-	0.23	[0,0.28]	chr9	394741	7	INTRON	INTRON	FANCC	ENSG00000158169.14	ENST00000289081.8:ENST00000375305.6:ENST00000649334.1:ENST00000490972.7:ENST00000649701.1:ENST00000696261.1:ENST00000636777.1:ENST00000474949.1:ENST00000647778.1:ENST00000433829.1:ENST00000647882.1:ENST00000649519.1:ENST00000650176.1:ENST00000648415.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	116	2	1.92652	1.95651	1.9865	0.0204624	0.0129046	0.110999	0.0990564
chr4	66041	66141	1905417	0	+	0.39	(0.378,0.408]	chr4	191003	55	INTRON	INTRON	ZNF595	ENSG00000272602.6	ENST00000608255.2:ENST00000609518.5:ENST00000509152.3:ENST00000610261.6	protein_coding	protein_coding	protein_coding	protein_coding	29	280	2	1.78875	1.9564850000000003	2.12422	0.00154102	7.67366e-4	0.0362716	0.0254241
chr15	85091879	85091979	6090042	0	+	0.28	[0,0.28]	chr15	579554	3	INTRON	INTRON	PDE8A	ENSG00000073417.15	ENST00000310298.8:ENST00000557957.5:ENST00000394553.6:ENST00000339708.9:ENST00000478717.5:ENST00000485596.5:ENST00000559742.5:ENST00000559086.5:ENST00000560789.5:ENST00000557819.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	13	184	2	1.9358	1.956455	1.97711	0.0108265	0.00478757	0.0872058	0.0636848
chr3	150424618	150424718	1533592	0	+	0.32	(0.28,0.32]	chr3	159811	11	INTRON	INTRON	TSC22D2	ENSG00000196428.13	ENST00000361875.8:ENST00000688009.1:ENST00000480589.1:ENST00000466814.1:ENST00000485421.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	125	2	1.70122	1.9564400000000002	2.21166	0.0356118	0.00189708	0.138061	0.0402736
chr6	53347917	53348016	3108180	0	-	0.545455	(0.515,0.57]	chr6	291051	107	INTRON	INTRON	ELOVL5	ENSG00000012660.14	ENST00000370918.8:ENST00000542638.5:ENST00000304434.11:ENST00000485336.5:ENST00000465983.5:ENST00000486973.1:ENST00000370913.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	58	2	1.94248	1.956415	1.97035	0.0195832	0.0115668	0.109483	0.0962115
chr1	19607319	19607419	40498	0	+	0.34	(0.32,0.35]	chr1	4746	60	INTRON	INTRON	MICOS10	ENSG00000173436.15	ENST00000648702.1:ENST00000617872.4:ENST00000322753.7:ENST00000486890.5:ENST00000462646.5:ENST00000467029.5:ENST00000481464.5:ENST00000498642.5:ENST00000485362.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	58	2	1.55682	1.9563650000000001	2.35591	0.0724487	0.0128129	0.188101	0.0990564
chr3	5179363	5179460	1354156	0	+	0.43299	(0.408,0.44]	chr3	142395	7	UTR3	UTR3:EXON_MRNA	ARL8B	ENSG00000134108.14	ENST00000256496.8:ENST00000455168.5:ENST00000419534.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	57	2	1.79818	1.9563249999999999	2.11447	0.0285207	0.020428	0.12666	0.122109
chr1	207698788	207698888	304491	0	+	0.43	(0.408,0.44]	chr1	35029	2	SS3_PROX	SS3_PROX:INTRON	CR1L	ENSG00000197721.17	ENST00000508064.7:ENST00000530905.1:ENST00000294997.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	42	2	1.85305	1.95626	2.05947	0.0543543	0.0333232	0.182243	0.134145
chr3	43482923	43483023	1674043	0	-	0.41	(0.408,0.44]	chr3	170972	498	INTRON	INTRON	ANO10	ENSG00000160746.13	ENST00000292246.8:ENST00000350459.8:ENST00000396091.7:ENST00000414522.6:ENST00000451430.6:ENST00000448045.1	protein_coding	protein_coding	protein_coding	protein_coding	4	42	2	1.85305	1.95626	2.05947	0.0543543	0.0333232	0.182243	0.134145
chr9	131486874	131486970	4217930	0	+	0.416667	(0.408,0.44]	chr9	386861	3	SS3_PROX	SS3_PROX:INTRON	PRRC2B	ENSG00000288701.1	ENST00000684596.1:ENST00000683519.1:ENST00000682501.1:ENST00000682662.1	protein_coding	protein_coding	protein_coding	protein_coding	4	42	2	1.85305	1.95626	2.05947	0.0543543	0.0333232	0.182243	0.134145
chr17	64501047	64501108	6815816	0	-	0.442623	(0.44,0.476]	chr17	673796	2	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DDX5	ENSG00000108654.16	ENST00000225792.10:ENST00000678890.1:ENST00000676601.1:ENST00000676575.1:ENST00000676969.1:ENST00000678810.1:ENST00000585317.2:ENST00000678110.1:ENST00000580026.6:ENST00000678757.1:ENST00000676581.1:ENST00000676785.1:ENST00000585111.2:ENST00000577922.6:ENST00000450599.7:ENST00000678814.1:ENST00000677726.1:ENST00000583212.2:ENST00000579461.2:ENST00000540698.6:ENST00000581230.5:ENST00000581693.5:ENST00000582326.2:ENST00000578491.2:ENST00000578804.5:ENST00000578758.5:ENST00000581237.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	23	224	2	1.79105	1.9562499999999998	2.12145	0.00312576	6.79078e-4	0.051377	0.0238419
chr18	31904192	31904291	6961000	0	-	0.414141	(0.408,0.44]	chr18	688740	28	INTRON	INTRON	TRAPPC8	ENSG00000153339.15	ENST00000283351.10:ENST00000580104.5:ENST00000582539.5:ENST00000582513.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	58	2	1.94273	1.9562300000000001	1.96973	0.0456237	0.0108773	0.149888	0.0923273
chr7	119648269	119648369	3627819	0	-	0.23	[0,0.28]	chr7	337315	1478	INTRON	INTRON	LINC02476	ENSG00000225546.6	ENST00000660268.1	lncRNA	lncRNA	lncRNA	lncRNA	6	83	2	1.60593	1.9561700000000002	2.30641	0.0433625	0.0213596	0.162255	0.113755
chr1	23077832	23077926	44363	0	+	0.404255	(0.378,0.408]	chr1	5326	6	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	KDM1A	ENSG00000004487.18	ENST00000692214.1:ENST00000686934.1:ENST00000689853.1:ENST00000465864.2:ENST00000691256.1:ENST00000688122.1:ENST00000692056.1:ENST00000692853.1:ENST00000689366.1:ENST00000686270.1:ENST00000685102.1:ENST00000690627.1:ENST00000686771.1:ENST00000692209.1:ENST00000686339.1:ENST00000691813.1:ENST00000693156.1:ENST00000688235.1:ENST00000692975.1:ENST00000687202.1:ENST00000691682.1:ENST00000691404.1:ENST00000356634.7:ENST00000400181.9:ENST00000689677.1:ENST00000686793.1:ENST00000689971.1:ENST00000688943.1:ENST00000690391.1:ENST00000494920.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	62	2	1.86598	1.9561	2.04622	0.0300232	0.0149927	0.129138	0.107704
chr15	66447193	66447293	6049844	0	+	0.41	(0.408,0.44]	chr15	576060	21	INTRON	INTRON	MAP2K1	ENSG00000169032.11	ENST00000689951.1:ENST00000685763.1:ENST00000307102.10:ENST00000691576.1:ENST00000686347.1:ENST00000691077.1:ENST00000687191.1:ENST00000691937.1:ENST00000692487.1:ENST00000685172.1:ENST00000692683.1:ENST00000684779.1:ENST00000693150.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	57	2	1.55035	1.9561	2.36185	0.0455214	0.0133164	0.164236	0.094512
chr2	235537735	235537835	1041774	0	+	0.44	(0.408,0.44]	chr2	111222	128	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1:ENST00000402604.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	106	2	1.70815	1.956055	2.20396	0.0159677	0.00235889	0.101453	0.0445848
chr7	129483921	129484018	3412073	0	+	0.57732000000000006	(0.57,1]	chr7	318998	4	INTRON	INTRON	STRIP2	ENSG00000128578.10	ENST00000249344.7	protein_coding	protein_coding	protein_coding	protein_coding	5	26	2	1.74185	1.9560549999999999	2.17026	0.0401765	0.0220522	0.143911	0.123836
chr7	151087799	151087895	3448362	0	+	0.625	(0.57,1]	chr7	322157	2	INTRON	INTRON	AGAP3	ENSG00000133612.19	ENST00000490097.5:ENST00000463381.5:ENST00000397238.7:ENST00000622464.4:ENST00000479901.5:ENST00000473312.5:ENST00000469901.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	26	2	1.74185	1.9560549999999999	2.17026	0.0401765	0.0220522	0.143911	0.123836
chr7	139081913	139082011	3656140	0	-	0.367347	(0.35,0.378]	chr7	339437	13	INTRON	INTRON	ZC3HAV1	ENSG00000105939.14	ENST00000242351.10:ENST00000464606.5:ENST00000680309.1:ENST00000471652.1	protein_coding	protein_coding	protein_coding	protein_coding	5	46	2	1.4414	1.956025	2.47065	0.0629423	0.0386172	0.196658	0.142656
chr16	30717575	30717674	6338848	0	+	0.515152	(0.476,0.515]	chr16	607790	7	INTRON	INTRON	SRCAP	ENSG00000080603.17	ENST00000262518.9:ENST00000395059.6:ENST00000483083.3	protein_coding	protein_coding	protein_coding	protein_coding	11	106	2	1.73024	1.9560149999999998	2.18179	0.0127077	0.00322689	0.0985982	0.0507087
chr12	53457487	53457586	5142943	0	+	0.484848	(0.476,0.515]	chr12	485394	11	INTRON	INTRON	PCBP2	ENSG00000197111.16	ENST00000546463.6:ENST00000437231.5:ENST00000447282.5:ENST00000359282.9:ENST00000549863.5:ENST00000359462.9:ENST00000550520.6:ENST00000552296.6:ENST00000551104.5:ENST00000552819.5:ENST00000455667.7:ENST00000439930.7:ENST00000548933.5:ENST00000546652.6:ENST00000562264.5:ENST00000548190.1:ENST00000550585.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	101	2	1.82798	1.95601	2.08404	0.0184548	0.00332119	0.116598	0.0512081
chr21	6325081	6325180	7364824	0	+	0.313131	(0.28,0.32]	chr21	751664	6	INTRON	INTRON	ENSG00000278903	ENSG00000278903.4	ENST00000688458.1:ENST00000689306.1:ENST00000692898.1:ENST00000624576.3:ENST00000623738.3:ENST00000692237.1:ENST00000692046.1:ENST00000689354.1:ENST00000624165.1	lncRNA	lncRNA	lncRNA	lncRNA	6	73	2	1.47299	1.955845	2.4387	0.0597769	0.0126802	0.189982	0.0926667
chr19	48748898	48748997	7199251	0	-	0.515152	(0.476,0.515]	chr19	729870	10	UTR3	UTR3:EXON_MRNA	FUT1	ENSG00000174951.12	ENST00000645652.2	protein_coding	protein_coding	protein_coding	protein_coding	5	49	2	1.86014	1.95584	2.05154	0.0336015	0.0277606	0.137011	0.134145
chr6	15253661	15253761	2823022	0	+	0.4	(0.378,0.408]	chr6	265190	43	INTRON	INTRON	JARID2	ENSG00000008083.14	ENST00000341776.7:ENST00000397311.4	protein_coding	protein_coding	protein_coding	protein_coding	9	77	2	1.39434	1.955835	2.51733	0.0349817	0.00808319	0.149337	0.0766625
chr1	65276409	65276509	135757	0	+	0.37	(0.35,0.378]	chr1	15346	111	INTRON	INTRON	DNAJC6	ENSG00000116675.16	ENST00000463018.5:ENST00000494710.6:ENST00000263441.11:ENST00000395325.7:ENST00000483402.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	63	2	1.56881	1.955795	2.34278	0.047622	0.0129593	0.153019	0.0991015
chr16	23467190	23467290	6464129	0	-	0.49	(0.476,0.515]	chr16	623810	19	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GGA2	ENSG00000103365.15	ENST00000309859.8:ENST00000567468.5:ENST00000567339.1:ENST00000568922.1:ENST00000566685.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	49	2	1.80284	1.95579	2.10874	0.033161	0.0285608	0.145899	0.12666
chr6	35846393	35846493	3088057	0	-	0.51	(0.476,0.515]	chr6	288820	34	INTRON	INTRON	SRPK1	ENSG00000096063.16	ENST00000373825.7:ENST00000423325.6:ENST00000346162.10:ENST00000361690.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	77	2	1.43644	1.9556999999999998	2.47496	0.047372	0.00323541	0.169265	0.0507251
chr1	23057965	23058065	44153	0	+	0.45	(0.44,0.476]	chr1	5288	4	SS5_PROX	SS5_PROX:INTRON	KDM1A	ENSG00000004487.18	ENST00000692214.1:ENST00000686934.1:ENST00000689853.1:ENST00000465864.2:ENST00000691256.1:ENST00000688122.1:ENST00000692056.1:ENST00000692853.1:ENST00000689366.1:ENST00000686270.1:ENST00000685102.1:ENST00000690627.1:ENST00000686771.1:ENST00000692209.1:ENST00000686339.1:ENST00000691813.1:ENST00000693156.1:ENST00000688235.1:ENST00000692975.1:ENST00000687202.1:ENST00000691682.1:ENST00000691404.1:ENST00000691694.1:ENST00000688680.1:ENST00000356634.7:ENST00000400181.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	105	2	1.8761	1.95567	2.03524	0.0115013	0.00336403	0.0889104	0.053249
chr16	53463250	53463345	6353838	0	+	0.410526	(0.408,0.44]	chr16	610006	2	INTRON	INTRON	RBL2	ENSG00000103479.17	ENST00000680543.1:ENST00000262133.11:ENST00000544405.6:ENST00000379935.8:ENST00000561512.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	43	2	1.55035	1.95554	2.36073	0.0481658	0.0455214	0.164236	0.153019
chr8	123353015	123353114	4042188	0	-	0.474747	(0.44,0.476]	chr8	368721	32	INTRON	INTRON	ATAD2	ENSG00000156802.13	ENST00000287394.10:ENST00000517666.5:ENST00000521903.5:ENST00000519124.5:ENST00000521496.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	50	2	1.7651	1.955415	2.14573	0.039388	0.0238593	0.143072	0.129075
chr21	14530068	14530168	7428042	0	-	0.5	(0.476,0.515]	chr21	757769	63	INTRON	INTRON	SAMSN1	ENSG00000155307.19	ENST00000647101.1:ENST00000644288.1:ENST00000400564.5:ENST00000400566.6:ENST00000285670.7:ENST00000619120.4:ENST00000493640.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	68	2	1.83961	1.955385	2.07116	0.0314489	0.00731321	0.13151	0.076234
chr5	132759107	132759207	2723756	0	-	0.59	(0.57,1]	chr5	256121	1	SS3_PROX	SS3_PROX:INTRON	SEPTIN8	ENSG00000164402.14	ENST00000378719.7:ENST00000481030.1:ENST00000378721.8:ENST00000296873.11:ENST00000448933.5:ENST00000620483.4:ENST00000378706.5:ENST00000378699.6:ENST00000378701.5:ENST00000458488.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	19	91	2	1.81783	1.9553699999999998	2.09291	0.00247664	6.41879e-4	0.0446195	0.0228971
chr2	58194773	58194872	1126277	0	-	0.414141	(0.408,0.44]	chr2	120916	1	INTRON	INTRON	FANCL	ENSG00000115392.13	ENST00000696400.1:ENST00000403295.8:ENST00000696492.1:ENST00000427708.7:ENST00000696314.1:ENST00000696315.1:ENST00000696454.1:ENST00000696508.1:ENST00000696548.1:ENST00000696542.1:ENST00000696432.1:ENST00000696319.1:ENST00000403676.6:ENST00000696433.1:ENST00000696434.1:ENST00000696499.1:ENST00000696564.1:ENST00000402135.8:ENST00000696546.1:ENST00000233741.9:ENST00000696316.1:ENST00000696378.1:ENST00000696435.1:ENST00000696493.1:ENST00000696543.1:ENST00000696544.1:ENST00000696545.1:ENST00000696565.1:ENST00000696620.1:ENST00000696621.1:ENST00000696635.1:ENST00000696364.1:ENST00000696634.1:ENST00000696317.1:ENST00000696622.1:ENST00000696467.1:ENST00000696547.1:ENST00000449070.6:ENST00000696305.1:ENST00000417361.2:ENST00000696338.1:ENST00000696361.1:ENST00000696318.1:ENST00000696371.1:ENST00000696409.1:ENST00000696410.1:ENST00000696455.1:ENST00000696468.1:ENST00000696527.1:ENST00000696567.1:ENST00000696324.1:ENST00000696566.1:ENST00000696623.1:ENST00000446381.6:ENST00000696469.1:ENST00000696624.1:ENST00000696411.1:ENST00000696475.1:ENST00000470506.2:ENST00000696358.1:ENST00000696373.1:ENST00000696394.1:ENST00000696320.1:ENST00000696339.1:ENST00000696395.1:ENST00000696341.1:ENST00000696340.1:ENST00000696374.1:ENST00000696396.1:ENST00000696342.1:ENST00000696325.1:ENST00000696399.1:ENST00000696398.1:ENST00000696306.1:ENST00000696397.1:ENST00000696360.1:ENST00000696344.1:ENST00000696343.1:ENST00000696637.1:ENST00000696362.1:ENST00000696528.1:ENST00000696497.1:ENST00000696326.1:ENST00000696638.1:ENST00000696625.1:ENST00000696510.1:ENST00000696438.1:ENST00000696496.1:ENST00000696509.1:ENST00000696569.1:ENST00000696457.1:ENST00000696458.1:ENST00000696473.1:ENST00000696495.1:ENST00000696415.1:ENST00000696472.1:ENST00000696494.1:ENST00000696363.1:ENST00000696414.1:ENST00000696459.1:ENST00000696498.1:ENST00000696416.1:ENST00000696530.1:ENST00000696460.1:ENST00000696570.1:ENST00000696531.1:ENST00000696307.1:ENST00000696401.1:ENST00000696345.1:ENST00000696377.1:ENST00000696417.1:ENST00000696594.1:ENST00000696595.1:ENST00000696379.1:ENST00000696346.1:ENST00000696380.1:ENST00000696347.1:ENST00000696461.1:ENST00000696596.1:ENST00000696549.1:ENST00000696597.1:ENST00000696550.1:ENST00000696598.1:ENST00000696321.1:ENST00000696476.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	110	2	1.85866	1.955335	2.05201	0.0106944	0.00399995	0.091856	0.0551303
chrX	73960662	73960760	7682263	0	+	0.469388	(0.44,0.476]	chrX	786628	17	INTRON	INTRON	JPX	ENSG00000225470.8	ENST00000664637.1:ENST00000639185.1:ENST00000655090.1:ENST00000640437.1:ENST00000660546.1:ENST00000667886.1:ENST00000660840.1:ENST00000657179.1:ENST00000670506.1:ENST00000657910.1:ENST00000662120.1:ENST00000671207.1:ENST00000659254.1:ENST00000656624.1:ENST00000667573.1:ENST00000660856.1:ENST00000660836.1:ENST00000668590.1:ENST00000658649.1:ENST00000414209.6:ENST00000654137.1:ENST00000670994.1:ENST00000653479.1:ENST00000602772.5:ENST00000655879.1:ENST00000657372.1:ENST00000657096.1:ENST00000602985.6:ENST00000670685.1:ENST00000670503.1:ENST00000663027.1:ENST00000654995.1:ENST00000602895.6:ENST00000654374.1:ENST00000660087.1:ENST00000665032.1:ENST00000671336.1:ENST00000671476.1:ENST00000667057.1:ENST00000670192.1:ENST00000670464.1:ENST00000665345.1:ENST00000661546.1:ENST00000662543.1:ENST00000602938.6:ENST00000664295.1:ENST00000654005.1:ENST00000669149.1:ENST00000659852.1:ENST00000656509.1:ENST00000602294.6:ENST00000667294.1:ENST00000663470.1:ENST00000602920.6:ENST00000671021.1:ENST00000659849.1:ENST00000667937.1:ENST00000661130.1:ENST00000654196.1:ENST00000655994.1:ENST00000659373.1:ENST00000662239.1:ENST00000670805.1:ENST00000656263.1:ENST00000653069.1:ENST00000657638.1:ENST00000653808.1:ENST00000653929.1:ENST00000653885.1:ENST00000659023.1:ENST00000602546.5:ENST00000659622.1:ENST00000671518.1:ENST00000670408.1	lncRNA	lncRNA	lncRNA	lncRNA	9	89	2	1.92704	1.9553	1.98356	0.0128054	0.00757232	0.0990564	0.0749063
chr7	119678661	119678761	3628123	0	-	0.42	(0.408,0.44]	chr7	337315	1782	INTRON	INTRON	LINC02476	ENSG00000225546.6	ENST00000660268.1	lncRNA	lncRNA	lncRNA	lncRNA	14	130	2	1.5285	1.955295	2.38209	0.0146221	0.0013549	0.106187	0.0336321
chr16	8111422	8111522	6441623	0	-	0.34	(0.32,0.35]	chr16	620351	1038	INTRON	INTRON	ENSG00000260289	ENSG00000260289.2	ENST00000670665.1:ENST00000654046.1:ENST00000567103.2	lncRNA	lncRNA	lncRNA	lncRNA	7	80	2	1.53859	1.9552899999999998	2.37199	0.0534261	0.00465833	0.162935	0.0629753
chr5	181310439	181310538	2563703	0	+	0.494949	(0.476,0.515]	chr5	245352	34	INTRON	INTRON	ENSG00000238035	ENSG00000238035.8	ENST00000499986.8	lncRNA	lncRNA	lncRNA	lncRNA	4	38	2	1.52615	1.955285	2.38442	0.0739267	0.0417472	0.190914	0.161736
chr8	223113	223213	3883259	0	-	0.48	(0.476,0.515]	chr8	357290	33	INTRON	INTRON	RPL23AP53	ENSG00000223508.5	ENST00000606975.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	4	38	2	1.52615	1.955285	2.38442	0.0739267	0.0417472	0.190914	0.161736
chr9	130793053	130793153	4214655	0	+	0.5	(0.476,0.515]	chr9	386427	782	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000393293.4	protein_coding	protein_coding	protein_coding	protein_coding	4	38	2	1.52615	1.955285	2.38442	0.0739267	0.0417472	0.190914	0.161736
chr21	39223412	39223511	7464611	0	-	0.333333	(0.32,0.35]	chr21	760426	44	INTRON	INTRON	BRWD1	ENSG00000185658.14	ENST00000333229.6:ENST00000342449.8:ENST00000446924.5:ENST00000380800.7:ENST00000424441.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	58	2	1.88909	1.95521	2.02133	0.0553737	0.017146	0.165463	0.111072
chr7	105035425	105035525	3374830	0	+	0.46	(0.44,0.476]	chr7	315854	205	INTRON	INTRON	KMT2E	ENSG00000005483.22	ENST00000622386.2:ENST00000257745.9:ENST00000334884.9:ENST00000311117.8:ENST00000478990.5:ENST00000480368.5:ENST00000495267.5:ENST00000476671.5:ENST00000667857.1:ENST00000474203.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	78	2	1.7651	1.95521	2.14532	0.039388	0.00311081	0.143072	0.0512673
chr6	135034263	135034362	3225262	0	-	0.262626	[0,0.28]	chr6	299841	72	INTRON	INTRON	HBS1L	ENSG00000112339.15	ENST00000367837.10:ENST00000415177.6:ENST00000367826.6:ENST00000533274.5:ENST00000526100.5:ENST00000314674.7:ENST00000524715.5:ENST00000529882.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	73	2	1.812	1.9552049999999999	2.09841	0.0729149	0.0151026	0.189235	0.108435
chr3	6533728	6533827	1356578	0	+	0.363636	(0.35,0.378]	chr3	142508	206	INTRON	INTRON	ENSG00000189229	ENSG00000189229.12	ENST00000660158.1:ENST00000433639.1:ENST00000655754.1:ENST00000653839.1:ENST00000662846.1:ENST00000659876.1:ENST00000414438.2:ENST00000658468.1:ENST00000414603.1:ENST00000669512.1:ENST00000667028.1:ENST00000655541.1:ENST00000668643.1:ENST00000671568.1:ENST00000671036.1:ENST00000669798.1:ENST00000655753.1:ENST00000655856.1:ENST00000658398.1:ENST00000661518.1:ENST00000661279.1:ENST00000655495.1:ENST00000663041.1:ENST00000659827.1:ENST00000667716.1:ENST00000662508.1:ENST00000668416.1:ENST00000658133.1:ENST00000659651.1:ENST00000342990.4:ENST00000660054.1:ENST00000671370.1	lncRNA	lncRNA	lncRNA	lncRNA	5	54	2	1.76773	1.9551850000000002	2.14264	0.0373863	0.0274795	0.155878	0.123904
chr19	5708773	5708865	7124595	0	-	0.51087	(0.476,0.515]	chr19	717143	5	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	LONP1	ENSG00000196365.12	ENST00000360614.8:ENST00000587552.5:ENST00000540670.6:ENST00000593119.5:ENST00000585374.5:ENST00000590558.5:ENST00000590729.5:ENST00000587365.1:ENST00000591321.1:ENST00000586617.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	68	2	1.73688	1.955175	2.17347	0.0252731	0.010447	0.133676	0.0855102
chr18	2709611	2709711	6865425	0	+	0.35	(0.32,0.35]	chr18	680035	13	INTRON	INTRON	SMCHD1	ENSG00000101596.17	ENST00000320876.11:ENST00000688342.1:ENST00000693213.1:ENST00000577880.5:ENST00000584897.5:ENST00000581711.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	97	2	1.6309	1.955145	2.27939	0.0198698	0.00844518	0.120668	0.0776969
chr1	1867171	1867271	362602	0	-	0.54	(0.515,0.57]	chr1	42311	271	INTRON	INTRON	GNB1	ENSG00000078369.18	ENST00000610897.4:ENST00000615252.4:ENST00000378609.9:ENST00000439272.6:ENST00000434686.6:ENST00000472614.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	58	2	1.63907	1.9551150000000002	2.27116	0.0350277	0.00601759	0.137535	0.0700813
chr8	31061531	31061629	3728212	0	+	0.27551	[0,0.28]	chr8	346535	19	INTRON	INTRON	WRN	ENSG00000165392.11	ENST00000650667.1:ENST00000298139.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	128	2	1.5408	1.9551049999999999	2.36941	0.0184144	0.0178556	0.116422	0.106151
chr1	67207615	67207665	140789	0	+	0.48	(0.476,0.515]	chr1	15766	1	UTR5	UTR5:EXON_MRNA:INTRON	IL23R	ENSG00000162594.16	ENST00000637002.1:ENST00000347310.10:ENST00000425614.3:ENST00000473881.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	41	2	1.91817	1.95507	1.99197	0.0459211	0.039572	0.164984	0.143072
chr1	78014716	78014816	148928	0	+	0.51	(0.476,0.515]	chr1	16594	7	INTRON	INTRON	DNAJB4	ENSG00000162616.9	ENST00000487931.1:ENST00000476396.1:ENST00000370763.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	41	2	1.91817	1.95507	1.99197	0.0459211	0.039572	0.164984	0.143072
chr17	35629115	35629214	6599965	0	+	0.50505	(0.476,0.515]	chr17	642282	10	INTRON	INTRON	AP2B1	ENSG00000006125.18	ENST00000616784.4:ENST00000621914.4:ENST00000620039.4:ENST00000616681.4:ENST00000621668.4:ENST00000610402.5:ENST00000612035.4:ENST00000614600.4:ENST00000612116.5:ENST00000618940.4:ENST00000619183.1:ENST00000588116.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	41	2	1.91817	1.95507	1.99197	0.0459211	0.039572	0.164984	0.143072
chr17	81879914	81880013	6850190	0	-	0.585859	(0.57,1]	chr17	678398	16	EXON_LNCRNA	EXON_LNCRNA	ENSG00000263731	ENSG00000263731.1	ENST00000582866.1	lncRNA	lncRNA	lncRNA	lncRNA	12	59	2	1.91764	1.9550450000000001	1.99245	0.00568465	0.0034497	0.0678837	0.0517761
chr1	150573739	150573821	551025	0	-	0.52439	(0.515,0.57]	chr1	64756	2	EXON_LNCRNA	EXON_LNCRNA:INTRON	MCL1	ENSG00000143384.14	ENST00000617352.1:ENST00000678770.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	83	2	1.44339	1.95502	2.46665	0.0352285	0.00127844	0.150284	0.0326395
chr8	129523275	129523375	4060515	0	-	0.26	[0,0.28]	chr8	369648	127	INTRON	INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1:ENST00000676273.1:ENST00000667643.1:ENST00000668791.1:ENST00000663716.1:ENST00000663572.1:ENST00000676148.1:ENST00000667962.1:ENST00000674877.1:ENST00000675316.1:ENST00000674656.1:ENST00000446592.7:ENST00000667341.1:ENST00000675186.1:ENST00000652971.1:ENST00000661447.1:ENST00000674863.1:ENST00000675498.1:ENST00000675527.1:ENST00000676108.1:ENST00000657647.1:ENST00000675589.1:ENST00000675913.1:ENST00000675109.1:ENST00000671632.1:ENST00000671311.1:ENST00000676099.1:ENST00000660652.1:ENST00000675522.1:ENST00000675183.1:ENST00000658861.1:ENST00000663991.1:ENST00000675044.1:ENST00000675435.1:ENST00000674639.1:ENST00000676069.1:ENST00000675532.1:ENST00000674762.1:ENST00000523151.6:ENST00000675948.1:ENST00000665364.1:ENST00000657251.1:ENST00000675166.1:ENST00000674883.1:ENST00000675867.1:ENST00000674580.1:ENST00000675393.1:ENST00000520048.1:ENST00000674906.1:ENST00000676030.1:ENST00000670588.1:ENST00000675072.1:ENST00000664936.1:ENST00000652914.1:ENST00000657069.1	lncRNA	lncRNA	lncRNA	lncRNA	8	116	2	1.40573	1.955015	2.5043	0.0578123	0.00511937	0.188564	0.0628102
chr16	74963937	74964032	6527081	0	-	0.463158	(0.44,0.476]	chr16	632153	3	INTRON	INTRON	WDR59	ENSG00000103091.15	ENST00000262144.11:ENST00000616369.4:ENST00000536050.5:ENST00000568462.5:ENST00000568323.5:ENST00000563111.2:ENST00000562331.5:ENST00000564859.1:ENST00000569421.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	41	2	1.9039	1.9549949999999998	2.00609	0.0501498	0.0360127	0.156383	0.152355
chr22	20761686	20761786	7558687	0	-	0.47	(0.44,0.476]	chr22	773097	3	SS3_PROX	SS3_PROX:INTRON	PI4KA	ENSG00000241973.11	ENST00000255882.11:ENST00000466162.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	41	2	1.9039	1.9549949999999998	2.00609	0.0501498	0.0360127	0.156383	0.152355
chr6	85619917	85620015	3151214	0	-	0.44898	(0.44,0.476]	chr6	293877	1	INTRON	INTRON	ENSG00000271793:SYNCRIP	ENSG00000271793.2:ENSG00000135316.19	ENST00000682083.1:ENST00000683074.1:ENST00000681965.1:ENST00000682504.1:ENST00000682106.1:ENST00000683364.1:ENST00000683436.1:ENST00000684220.1:ENST00000683909.1:ENST00000684462.1:ENST00000616122.5:ENST00000678528.1:ENST00000676637.1:ENST00000677771.1:ENST00000355238.11:ENST00000678878.1:ENST00000677481.1:ENST00000677646.1:ENST00000676630.1:ENST00000678618.1:ENST00000676542.1:ENST00000677059.1:ENST00000444272.2:ENST00000678899.1:ENST00000369622.8:ENST00000678355.1:ENST00000676688.1:ENST00000677514.1:ENST00000678816.1:ENST00000678930.1:ENST00000678589.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	41	2	1.9039	1.9549949999999998	2.00609	0.0501498	0.0360127	0.156383	0.152355
chr5	43143897	43143996	2349258	0	+	0.363636	(0.35,0.378]	chr5	226667	42	INTRON	INTRON	ZNF131	ENSG00000172262.12	ENST00000515326.5:ENST00000682664.1:ENST00000510026.5:ENST00000504359.1:ENST00000509156.5:ENST00000508259.5:ENST00000507218.5:ENST00000306938.8:ENST00000505606.6:ENST00000509634.5:ENST00000509341.5:ENST00000511736.5:ENST00000509931.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	45	2	1.93432	1.95491	1.9755	0.0481438	0.0398617	0.161534	0.153019
chr7	111429881	111429981	3622785	0	-	0.36	(0.35,0.378]	chr7	337108	371	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000452895.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding	4	45	2	1.93432	1.95491	1.9755	0.0481438	0.0398617	0.161534	0.153019
chrX	73965623	73965719	7682314	0	+	0.364583	(0.35,0.378]	chrX	786634	25	INTRON	INTRON	JPX	ENSG00000225470.8	ENST00000664637.1:ENST00000639185.1:ENST00000655090.1:ENST00000640437.1:ENST00000660546.1:ENST00000667886.1:ENST00000660840.1:ENST00000657179.1:ENST00000670506.1:ENST00000657910.1:ENST00000662120.1:ENST00000671207.1:ENST00000659254.1:ENST00000656624.1:ENST00000667573.1:ENST00000660856.1:ENST00000660836.1:ENST00000668590.1:ENST00000658649.1:ENST00000414209.6:ENST00000654137.1:ENST00000670994.1:ENST00000653479.1:ENST00000602772.5:ENST00000655879.1:ENST00000657372.1:ENST00000657096.1:ENST00000602985.6:ENST00000670685.1:ENST00000670503.1:ENST00000663027.1:ENST00000654995.1:ENST00000602895.6:ENST00000654374.1:ENST00000660087.1:ENST00000665032.1:ENST00000671336.1:ENST00000671476.1:ENST00000667057.1:ENST00000670192.1:ENST00000670464.1:ENST00000665345.1:ENST00000661546.1:ENST00000662543.1:ENST00000602938.6:ENST00000664295.1:ENST00000654005.1:ENST00000669149.1:ENST00000659852.1:ENST00000656509.1:ENST00000602294.6:ENST00000667294.1:ENST00000663470.1:ENST00000602920.6:ENST00000671021.1:ENST00000659849.1:ENST00000667937.1:ENST00000661130.1:ENST00000654196.1:ENST00000655994.1:ENST00000659373.1:ENST00000662239.1:ENST00000670805.1:ENST00000656263.1:ENST00000653069.1:ENST00000657638.1:ENST00000653808.1:ENST00000653929.1:ENST00000653885.1:ENST00000659023.1:ENST00000602546.5:ENST00000659622.1:ENST00000671518.1:ENST00000670408.1	lncRNA	lncRNA	lncRNA	lncRNA	4	45	2	1.93432	1.95491	1.9755	0.0481438	0.0398617	0.161534	0.153019
chr2	101287075	101287175	1199330	0	-	0.49	(0.476,0.515]	chr2	128163	5	INTRON	INTRON	RNF149	ENSG00000163162.9	ENST00000424632.5:ENST00000295317.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	86	2	1.93099	1.954875	1.97876	0.0140312	0.00655939	0.0959618	0.0735539
chr5	139307138	139307238	2499515	0	+	0.25	[0,0.28]	chr5	238915	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	MATR3	ENSG00000280987.4:ENSG00000015479.20	ENST00000509990.5:ENST00000506147.5:ENST00000512107.5:ENST00000361059.7:ENST00000394800.6:ENST00000502929.5:ENST00000504203.5:ENST00000514694.5:ENST00000509644.5:ENST00000505016.2:ENST00000502394.1:ENST00000512876.5:ENST00000513678.5:ENST00000513121.1:ENST00000504045.5:ENST00000504311.5:ENST00000502499.5:ENST00000510056.5:ENST00000511249.5:ENST00000394805.8:ENST00000507860.1:ENST00000509918.5:ENST00000503811.5:ENST00000511978.5:ENST00000618441.5:ENST00000508689.1:ENST00000514528.5:ENST00000504643.5:ENST00000514488.1:ENST00000503340.1:ENST00000504023.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	10	118	2	1.47993	1.954855	2.42978	0.026411	0.0149657	0.133676	0.0994339
chr2	26036921	26037020	713126	0	+	0.474747	(0.44,0.476]	chr2	82438	18	INTRON	INTRON	RAB10	ENSG00000084733.11	ENST00000264710.5:ENST00000495146.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	57	2	1.43625	1.9548200000000002	2.47339	0.063142	0.0090196	0.197183	0.080367
chr22	21507248	21507348	7560163	0	-	0.54	(0.515,0.57]	chr22	773318	148	INTRON	INTRON	PI4KAP2	ENSG00000183506.17	ENST00000450651.5:ENST00000467443.5:ENST00000479693.1:ENST00000476537.1:ENST00000491562.5	transcribed_unitary_pseudogene	retained_intron	transcribed_unitary_pseudogene	retained_intron:processed_transcript	18	143	2	1.52022	1.9547849999999998	2.38935	0.0103581	3.79134e-4	0.0897066	0.018088
chr20	31743944	31744044	7253707	0	+	0.55	(0.515,0.57]	chr20	736731	9	INTRON	INTRON	TPX2	ENSG00000088325.16	ENST00000340513.4:ENST00000300403.11	protein_coding	protein_coding	protein_coding	protein_coding	5	37	2	1.56838	1.954625	2.34087	0.0469761	0.0424458	0.161763	0.151917
chr5	83056195	83056294	2666483	0	-	0.272727	[0,0.28]	chr5	252474	35	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TMEM167A	ENSG00000174695.10	ENST00000502346.2:ENST00000511450.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	14	191	2	1.90819	1.9545599999999999	2.00093	0.0114094	0.00417862	0.0886611	0.0591344
chr1	205609326	205609425	623272	0	-	0.333333	(0.32,0.35]	chr1	74129	15	UTR3	UTR3:EXON_MRNA:INTRON	ELK4	ENSG00000158711.14	ENST00000616704.4:ENST00000357992.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	14	151	2	1.8445	1.954455	2.06441	0.00668335	0.00410272	0.0706523	0.0584086
chr2	240013615	240013713	1345612	0	-	0.397959	(0.378,0.408]	chr2	141095	12	UTR3	UTR3:EXON_MRNA:INTRON	NDUFA10	ENSG00000130414.13	ENST00000679183.1:ENST00000677057.1:ENST00000676782.1:ENST00000677407.1:ENST00000676929.1:ENST00000678455.1:ENST00000252711.7:ENST00000677692.1:ENST00000476216.6:ENST00000677395.1:ENST00000678188.1:ENST00000677979.1:ENST00000678914.1:ENST00000678562.1:ENST00000678832.1:ENST00000677155.1:ENST00000677764.1:ENST00000677294.1:ENST00000678468.1:ENST00000678158.1:ENST00000676491.1:ENST00000677114.1:ENST00000404554.5:ENST00000620965.5:ENST00000485344.6:ENST00000679308.1:ENST00000677567.1:ENST00000679158.1:ENST00000443626.5:ENST00000444548.6:ENST00000448880.6:ENST00000677490.1:ENST00000307300.8:ENST00000678898.1:ENST00000677368.1:ENST00000677263.1:ENST00000678289.1:ENST00000676784.1:ENST00000414580.2:ENST00000679332.1:ENST00000678737.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	126	2	1.72734	1.95439	2.18144	0.00773535	0.0035488	0.0786575	0.0529478
chr1	51783143	51783233	101086	0	+	0.3	(0.28,0.32]	chr1	13384	1	INTRON	INTRON	OSBPL9	ENSG00000117859.19	ENST00000371714.5:ENST00000428468.6:ENST00000447887.5:ENST00000495776.5:ENST00000435274.6:ENST00000453295.5:ENST00000531828.5:ENST00000361556.9:ENST00000462759.5:ENST00000486942.5:ENST00000475697.5:ENST00000531819.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	149	2	1.61821	1.954335	2.29046	0.0173709	0.00310972	0.112406	0.0498063
chr7	148824956	148825055	3670159	0	-	0.262626	[0,0.28]	chr7	340580	42	INTRON	INTRON	EZH2	ENSG00000106462.12	ENST00000683292.1:ENST00000320356.7:ENST00000492143.5:ENST00000478654.5:ENST00000350995.6:ENST00000460911.5:ENST00000683744.1:ENST00000682317.1:ENST00000682263.1:ENST00000684300.1:ENST00000476773.5:ENST00000483967.5:ENST00000498186.5:ENST00000483012.1:ENST00000682401.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	17	240	2	1.68593	1.9542899999999999	2.22265	0.0175022	9.64362e-4	0.104904	0.0285604
chr12	110286069	110286168	5226146	0	+	0.494949	(0.476,0.515]	chr12	495234	29	INTRON	INTRON	ATP2A2	ENSG00000174437.18	ENST00000552636.2:ENST00000308664.10:ENST00000539276.7:ENST00000377685.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	81	2	1.54352	1.95426	2.365	0.0165511	0.0128901	0.110511	0.0926667
chr17	48844326	48844426	6624082	0	+	0.34	(0.32,0.35]	chr17	646437	3	SS5_PROX	SS5_PROX:INTRON	CALCOCO2	ENSG00000136436.15	ENST00000503463.5:ENST00000509507.5:ENST00000448105.6:ENST00000258947.8:ENST00000508679.5:ENST00000416445.6:ENST00000513119.5:ENST00000509415.5:ENST00000570513.5:ENST00000575560.5:ENST00000576582.5:ENST00000505071.5:ENST00000507076.1:ENST00000502761.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	89	2	1.91062	1.954235	1.99785	0.0215554	0.00946346	0.114686	0.0863138
chr21	6327460	6327560	7364848	0	+	0.32	(0.28,0.32]	chr21	751664	30	INTRON	INTRON	ENSG00000278903	ENSG00000278903.4	ENST00000688458.1:ENST00000689306.1:ENST00000692898.1:ENST00000624576.3:ENST00000623738.3:ENST00000692237.1:ENST00000692046.1:ENST00000689354.1:ENST00000624165.1	lncRNA	lncRNA	lncRNA	lncRNA	19	230	2	1.67966	1.95416	2.22866	0.0100899	9.02186e-4	0.0850389	0.0275447
chr22	20757241	20757340	7558642	0	-	0.363636	(0.35,0.378]	chr22	773092	37	INTRON	INTRON	PI4KA	ENSG00000241973.11	ENST00000255882.11:ENST00000466162.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	81	2	1.422	1.9541149999999998	2.48623	0.032366	0.00938784	0.145026	0.0817766
chr9	125333803	125333900	4198994	0	+	0.381443	(0.378,0.408]	chr9	383237	8	INTRON	INTRON	GAPVD1	ENSG00000165219.23	ENST00000497580.5:ENST00000297933.11:ENST00000470056.5:ENST00000394105.6:ENST00000394083.6:ENST00000495955.5:ENST00000467750.5:ENST00000394104.6:ENST00000312123.13:ENST00000431329.5:ENST00000436712.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	19	173	2	1.86052	1.954075	2.04763	0.00619436	0.00144077	0.0678171	0.034801
chr1	207047925	207048024	624916	0	-	0.333333	(0.32,0.35]	chr1	74431	42	UTR3	UTR3:EXON_MRNA	YOD1	ENSG00000180667.11	ENST00000367084.1:ENST00000315927.9	protein_coding	protein_coding	protein_coding	protein_coding	34	359	2	1.64481	1.953905	2.263	0.0028705	5.1984e-4	0.0494641	0.0209548
chr7	132958326	132958426	3644646	0	-	0.28	[0,0.28]	chr7	338848	710	INTRON	INTRON	CHCHD3	ENSG00000106554.13	ENST00000262570.10:ENST00000448878.6:ENST00000496427.5:ENST00000423635.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	10	132	2	1.72637	1.9539	2.18143	0.0149482	0.0130163	0.0994282	0.0992959
chr1	47264896	47264995	445602	0	-	0.333333	(0.32,0.35]	chr1	53995	14	INTRON	INTRON	STIL	ENSG00000123473.17	ENST00000360380.7:ENST00000371877.8:ENST00000337817.10:ENST00000682940.1:ENST00000683977.1:ENST00000682977.1:ENST00000396221.6:ENST00000684618.1:ENST00000447475.7:ENST00000418131.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	58	2	1.60297	1.953865	2.30476	0.0647328	0.0151817	0.179192	0.108535
chr12	121330702	121330794	5436961	0	-	0.336957	(0.32,0.35]	chr12	519892	1	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ANAPC5	ENSG00000089053.13	ENST00000261819.8:ENST00000535641.5:ENST00000541887.5:ENST00000534976.5:ENST00000441917.6:ENST00000539079.5:ENST00000544314.5:ENST00000535482.1:ENST00000545218.5:ENST00000535472.5:ENST00000538334.1:ENST00000538223.1:ENST00000539612.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	81	2	1.60034	1.9538250000000001	2.30731	0.0221816	0.0176772	0.124191	0.10525
chrX	44899485	44899585	7648865	0	+	0.42	(0.408,0.44]	chrX	782726	251	INTRON	INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000675440.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000621147.5:ENST00000475233.1:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	75	2	1.50103	1.9538200000000001	2.40661	0.0237058	0.011475	0.129075	0.0888882
chr17	4284109	4284207	6711530	0	-	0.428571	(0.408,0.44]	chr17	657697	8	INTRON	INTRON	UBE2G1	ENSG00000132388.13	ENST00000396981.7:ENST00000572484.5:ENST00000574633.5:ENST00000571980.1:ENST00000571953.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	37	2	1.6306	1.9537900000000001	2.27698	0.0583528	0.0544158	0.182272	0.167723
chr17	82535181	82535281	6692759	0	+	0.41	(0.408,0.44]	chr17	654627	145	INTRON	INTRON	FOXK2	ENSG00000141568.21	ENST00000473637.6:ENST00000335255.10:ENST00000527313.6:ENST00000570585.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	37	2	1.6306	1.9537900000000001	2.27698	0.0583528	0.0544158	0.182272	0.167723
chr2	161404049	161404148	902078	0	+	0.424242	(0.408,0.44]	chr2	99743	85	INTRON	INTRON	PSMD14	ENSG00000115233.12	ENST00000409682.8:ENST00000477232.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	37	2	1.6306	1.9537900000000001	2.27698	0.0583528	0.0544158	0.182272	0.167723
chrX	73975862	73975962	7682417	0	+	0.34	(0.32,0.35]	chrX	786638	75	INTRON	INTRON	JPX	ENSG00000225470.8	ENST00000664637.1:ENST00000639185.1:ENST00000655090.1:ENST00000640437.1:ENST00000660546.1:ENST00000667886.1:ENST00000660840.1:ENST00000657179.1:ENST00000670506.1:ENST00000657910.1:ENST00000662120.1:ENST00000671207.1:ENST00000659254.1:ENST00000656624.1:ENST00000667573.1:ENST00000660856.1:ENST00000660836.1:ENST00000668590.1:ENST00000658649.1:ENST00000414209.6:ENST00000654137.1:ENST00000670994.1:ENST00000602772.5:ENST00000655879.1:ENST00000657372.1:ENST00000657096.1:ENST00000602985.6:ENST00000670685.1:ENST00000670503.1:ENST00000663027.1:ENST00000654995.1:ENST00000602895.6:ENST00000654374.1:ENST00000660087.1:ENST00000665032.1:ENST00000671336.1:ENST00000671476.1:ENST00000667057.1:ENST00000670192.1:ENST00000670464.1:ENST00000665345.1:ENST00000661546.1:ENST00000662543.1:ENST00000602938.6:ENST00000664295.1:ENST00000654005.1:ENST00000669149.1:ENST00000659852.1:ENST00000656509.1:ENST00000602294.6:ENST00000667294.1:ENST00000663470.1:ENST00000602920.6:ENST00000671021.1:ENST00000659849.1:ENST00000667937.1:ENST00000661130.1:ENST00000654196.1:ENST00000655994.1:ENST00000659373.1:ENST00000662239.1:ENST00000670805.1:ENST00000656263.1:ENST00000653069.1:ENST00000657638.1:ENST00000653808.1:ENST00000653929.1:ENST00000653885.1:ENST00000659023.1:ENST00000602546.5:ENST00000659622.1:ENST00000671518.1:ENST00000670408.1	lncRNA	lncRNA	lncRNA	lncRNA	11	122	2	1.47728	1.953665	2.43005	0.0274903	0.00245997	0.136819	0.0446195
chr9	131127831	131127928	4215640	0	+	0.412371	(0.408,0.44]	chr9	386506	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NUP214	ENSG00000126883.19	ENST00000695497.1:ENST00000695498.1:ENST00000695496.1:ENST00000695495.1:ENST00000695494.1:ENST00000695493.1:ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000525561.2:ENST00000651022.1:ENST00000651639.1:ENST00000531584.1:ENST00000695499.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	71	2	1.93002	1.953615	1.97721	0.022095	0.0121661	0.123903	0.0910127
chr20	47216293	47216392	7348087	0	-	0.444444	(0.44,0.476]	chr20	749229	32	INTRON	INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000467200.6:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4	protein_coding	protein_coding	protein_coding	protein_coding	9	91	2	1.4962	1.95357	2.41094	0.0392301	0.00205841	0.161534	0.0409869
chr19	52654864	52654963	7206774	0	-	0.50505	(0.476,0.515]	chr19	731400	1	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	ZNF83:ENSG00000269825	ENSG00000167766.20:ENSG00000269825.2	ENST00000600714.5:ENST00000601257.5:ENST00000594682.6:ENST00000687234.1:ENST00000598536.5:ENST00000595171.5:ENST00000596440.5:ENST00000602232.5:ENST00000598322.2:ENST00000598190.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	49	2	1.74317	1.95347	2.16377	0.0396373	0.0243026	0.161534	0.12011
chr3	177177202	177177302	1872246	0	-	0.5	(0.476,0.515]	chr3	187438	59	INTRON	INTRON	TBL1XR1	ENSG00000177565.18	ENST00000457928.7:ENST00000430069.5:ENST00000673974.1:ENST00000352800.10:ENST00000422442.6:ENST00000428970.5:ENST00000424913.5:ENST00000437738.5:ENST00000431421.5:ENST00000635794.1:ENST00000630796.2:ENST00000450267.5:ENST00000630833.2:ENST00000431674.5:ENST00000422066.5:ENST00000443315.5:ENST00000627825.2:ENST00000427349.5:ENST00000413084.5:ENST00000637137.1:ENST00000491623.2:ENST00000637544.1:ENST00000636187.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	49	2	1.74317	1.95347	2.16377	0.0396373	0.0243026	0.161534	0.12011
chr9	37134837	37134937	4117801	0	+	0.5	(0.476,0.515]	chr9	375372	75	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000322831.6:ENST00000461038.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	24	224	2	1.88403	1.9533850000000001	2.02274	0.00224597	7.62374e-4	0.0424662	0.0253674
chr15	28253939	28254039	6123360	0	-	0.34	(0.32,0.35]	chr15	583304	2	SS5_PROX	SS5_PROX:INTRON	HERC2	ENSG00000128731.18	ENST00000261609.13	protein_coding	protein_coding	protein_coding	protein_coding	4	48	2	1.88909	1.953385	2.01768	0.0553737	0.0361337	0.165463	0.152563
chr6	33301463	33301562	3082685	0	-	0.585859	(0.57,1]	chr6	288364	19	UTR3	UTR3:EXON_MRNA	TAPBP	ENSG00000231925.13	ENST00000434618.7	protein_coding	protein_coding	protein_coding	protein_coding	20	97	2	1.61262	1.9532599999999998	2.2939	0.00609111	1.73332e-4	0.0705733	0.0120833
chr5	171389465	171389550	2546580	0	+	0.329412	(0.32,0.35]	chr5	243080	3	INTRON	INTRON	NPM1	ENSG00000181163.14	ENST00000517671.5:ENST00000676613.1:ENST00000678186.1:ENST00000678267.1:ENST00000677297.1:ENST00000521672.6:ENST00000679190.1:ENST00000677467.1:ENST00000678280.1:ENST00000676625.1:ENST00000679006.1:ENST00000351986.10:ENST00000676504.1:ENST00000676589.1:ENST00000677357.1:ENST00000679233.1:ENST00000296930.10:ENST00000393820.2:ENST00000521260.2:ENST00000518587.2:ENST00000678774.1:ENST00000521710.2:ENST00000523339.1:ENST00000677600.1:ENST00000677741.1:ENST00000523622.1:ENST00000677325.1:ENST00000677672.1:ENST00000677907.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	107	2	1.60167	1.953215	2.30476	0.0179272	0.0151817	0.108535	0.106518
chr2	177261106	177261206	1275811	0	-	0.41	(0.408,0.44]	chr2	134708	265	INTRON	INTRON	NFE2L2	ENSG00000116044.16	ENST00000397063.8:ENST00000464747.5:ENST00000397062.8:ENST00000446151.6:ENST00000449627.1:ENST00000448782.5:ENST00000430047.1:ENST00000586532.5:ENST00000421929.5:ENST00000423513.5:ENST00000588123.1:ENST00000477534.1:ENST00000462023.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	99	2	1.47066	1.95312	2.43558	0.0457145	7.35362e-4	0.149888	0.0247453
chr6	159728898	159728998	3022402	0	+	0.35	(0.32,0.35]	chr6	281890	8	INTRON	INTRON	WTAP	ENSG00000146457.16	ENST00000358372.8:ENST00000650096.1:ENST00000614346.4:ENST00000621533.5:ENST00000494513.1:ENST00000631126.2:ENST00000337387.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	66	2	1.68188	1.953085	2.22429	0.031521	0.0226421	0.144381	0.117557
chr12	123400299	123400398	5242743	0	+	0.383838	(0.378,0.408]	chr12	498205	35	INTRON	INTRON	KMT5A	ENSG00000183955.14	ENST00000402868.8:ENST00000437519.5:ENST00000461103.5:ENST00000437502.1:ENST00000485469.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	88	2	1.90812	1.953065	1.99801	0.0264295	0.00408225	0.122506	0.0581373
chr6	4822099	4822199	2791319	0	+	0.45	(0.44,0.476]	chr6	263598	449	INTRON	INTRON	CDYL	ENSG00000153046.18	ENST00000328908.9:ENST00000491864.1:ENST00000440139.5:ENST00000483019.1:ENST00000397588.8:ENST00000472453.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	11	105	2	1.89689	1.953055	2.00922	0.0068301	0.00630125	0.0722266	0.0713163
chr3	197862130	197862230	1598447	0	+	0.47	(0.44,0.476]	chr3	165649	28	INTRON	INTRON	LRCH3	ENSG00000186001.14	ENST00000438796.6:ENST00000428136.2:ENST00000425562.7:ENST00000441090.6:ENST00000414675.6:ENST00000334859.8:ENST00000461674.5:ENST00000452660.5:ENST00000433298.5:ENST00000481048.5:ENST00000471667.5:ENST00000483442.5:ENST00000473177.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	96	2	1.7899	1.95294	2.11598	0.0158205	0.0035604	0.101453	0.0548355
chr5	95741657	95741757	2431346	0	+	0.46	(0.44,0.476]	chr5	233646	42	INTRON	INTRON	RHOBTB3	ENSG00000164292.13	ENST00000504949.1:ENST00000506959.5:ENST00000379982.8:ENST00000510623.1:ENST00000502541.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	39	2	1.61163	1.95294	2.29425	0.0598319	0.0518406	0.176696	0.169278
chr6	8434976	8435076	3055116	0	-	0.48	(0.476,0.515]	chr6	284221	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	SLC35B3	ENSG00000124786.12	ENST00000644923.2:ENST00000649788.1:ENST00000648987.1:ENST00000379660.4:ENST00000648867.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	56	2	1.68907	1.95292	2.21677	0.0296007	0.0207026	0.142135	0.110999
chr15	97971873	97971971	6112694	0	+	0.346939	(0.32,0.35]	chr15	581935	8	UTR3	UTR3:EXON_MRNA	ARRDC4	ENSG00000140450.9	ENST00000268042.7	protein_coding	protein_coding	protein_coding	protein_coding	4	43	2	1.67393	1.952875	2.23182	0.068598	0.0496128	0.184298	0.174685
chr20	47235627	47235726	7348286	0	-	0.494949	(0.476,0.515]	chr20	749259	55	INTRON	INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000467200.6:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4	protein_coding	protein_coding	protein_coding	protein_coding	6	56	2	1.58842	1.9528400000000001	2.31726	0.0406588	0.015077	0.161534	0.0994339
chr10	30339025	30339125	4587540	0	-	0.58	(0.57,1]	chr10	422975	16	INTRON	INTRON	MTPAP	ENSG00000107951.15	ENST00000263063.9:ENST00000488290.5:ENST00000417581.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	31	2	1.89351	1.952835	2.01216	0.0255126	0.0163389	0.133676	0.101571
chr14	101888889	101888988	5819789	0	+	0.545455	(0.515,0.57]	chr14	551895	50	INTRON	INTRON	PPP2R5C	ENSG00000078304.20	ENST00000694906.1:ENST00000422945.6:ENST00000328724.9:ENST00000350249.7:ENST00000557621.5:ENST00000334743.9:ENST00000445439.7:ENST00000557095.5:ENST00000554137.5:ENST00000556218.5:ENST00000557534.1:ENST00000557716.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	11	88	2	1.18251	1.952795	2.72308	0.0690131	2.69455e-4	0.184298	0.0145437
chr2	112651359	112651457	852117	0	+	0.377551	(0.35,0.378]	chr2	95574	33	INTRON	INTRON	SLC20A1	ENSG00000144136.11	ENST00000272542.8:ENST00000423633.5:ENST00000498224.5:ENST00000433924.5:ENST00000456264.5:ENST00000413135.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	17	174	2	1.43109	1.9527299999999999	2.47437	0.0237083	2.46554e-4	0.118716	0.0139149
chr22	20102082	20102182	7478457	0	+	0.26	[0,0.28]	chr22	762741	69	INTRON	INTRON	DGCR8	ENSG00000128191.16	ENST00000383024.6:ENST00000351989.8:ENST00000495826.5:ENST00000407755.1:ENST00000498171.5:ENST00000491892.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	117	2	1.84107	1.952665	2.06426	0.0192797	0.0168952	0.110899	0.108861
chr9	33045613	33045712	4243059	0	-	0.525253	(0.515,0.57]	chr9	390017	40	UTR3	UTR3:EXON_MRNA	SMU1	ENSG00000122692.9	ENST00000397149.4	protein_coding	protein_coding	protein_coding	protein_coding	11	88	2	1.70467	1.95255	2.20043	0.0109309	0.00392045	0.0873034	0.0570863
chr19	28533800	28533899	7166433	0	-	0.252525	[0,0.28]	chr19	724189	656	INTRON	INTRON	ENSG00000283403:ENSG00000267243	ENSG00000283403.1:ENSG00000267243.6	ENST00000592347.5:ENST00000593065.5	lncRNA	lncRNA	lncRNA	lncRNA	22	307	2	1.67603	1.952475	2.22892	0.0116904	7.60927e-4	0.0892604	0.025333
chr21	39193537	39193636	7464294	0	-	0.313131	(0.28,0.32]	chr21	760356	63	UTR3	UTR3:EXON_MRNA:INTRON	BRWD1	ENSG00000185658.14	ENST00000333229.6:ENST00000342449.8:ENST00000446924.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	76	2	1.72279	1.952455	2.18212	0.0496859	0.010265700000000001	0.156383	0.089002
chr3	16315064	16315164	1375386	0	+	0.33	(0.32,0.35]	chr3	145005	91	INTRON	INTRON	OXNAD1	ENSG00000154814.14	ENST00000605932.5:ENST00000435829.6:ENST00000606098.1	protein_coding	protein_coding	protein_coding	protein_coding	6	66	2	1.63843	1.952415	2.2664	0.0360919	0.0199969	0.152563	0.109608
chr14	21223158	21223258	5834694	0	-	0.47	(0.44,0.476]	chr14	554424	97	INTRON	INTRON	HNRNPC	ENSG00000092199.19	ENST00000336053.10:ENST00000553300.6:ENST00000554969.5:ENST00000556142.5:ENST00000554455.5:ENST00000430246.6:ENST00000553753.5:ENST00000555309.5:ENST00000555914.5:ENST00000557442.5:ENST00000556628.5:ENST00000556513.5:ENST00000555883.5:ENST00000557201.5:ENST00000556897.5:ENST00000420743.6:ENST00000557157.5:ENST00000554539.5:ENST00000554383.5:ENST00000554417.1:ENST00000555215.5:ENST00000555137.5:ENST00000554891.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	95	2	1.16935	1.9524	2.73545	0.0663151	7.908e-4	0.182133	0.0258324
chr7	12690289	12690385	3285874	0	+	0.3125	(0.28,0.32]	chr7	305191	16	UTR3	UTR3:EXON_MRNA	ARL4A	ENSG00000122644.13	ENST00000396663.2:ENST00000651779.1	protein_coding	protein_coding	protein_coding	protein_coding	14	172	2	1.71643	1.952385	2.18834	0.00963226	0.00329523	0.086971	0.0511446
chr12	110384643	110384741	5409000	0	-	0.357143	(0.35,0.378]	chr12	516433	13	INTRON	INTRON	ANAPC7	ENSG00000196510.14	ENST00000455511.9:ENST00000450008.3:ENST00000548234.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	12	119	2	1.58	1.95238	2.32476	0.0148489	0.00343673	0.106937	0.0517761
chr19	19323200	19323300	7034760	0	+	0.5	(0.476,0.515]	chr19	701329	9	INTRON	INTRON	MAU2	ENSG00000129933.21	ENST00000262815.13:ENST00000609122.5:ENST00000586189.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	50	2	1.83961	1.9522599999999999	2.06491	0.0314489	0.0304733	0.143385	0.13151
chr5	66145095	66145183	2372495	0	+	0.409091	(0.408,0.44]	chr5	228646	4	UTR5	UTR5:EXON_MRNA:INTRON	SREK1	ENSG00000153914.16	ENST00000521691.5:ENST00000612404.4:ENST00000523851.1:ENST00000334121.11:ENST00000520058.1:ENST00000520953.5:ENST00000522912.5:ENST00000524111.5:ENST00000380918.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	63	2	1.49789	1.95225	2.40661	0.0390091	0.011475	0.161009	0.0888882
chr7	139399587	139399684	3437994	0	+	0.515464	(0.515,0.57]	chr7	320347	5	INTRON	INTRON	LUC7L2:FMC1-LUC7L2	ENSG00000146963.18:ENSG00000269955.2	ENST00000541170.7:ENST00000541515.3:ENST00000619796.4:ENST00000354926.9:ENST00000456182.5:ENST00000263545.7:ENST00000463912.5:ENST00000498518.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	35	2	1.8707	1.9521549999999999	2.03361	0.0523213	0.0325854	0.160182	0.145164
chr14	30933087	30933185	5856934	0	-	0.438776	(0.408,0.44]	chr14	556469	8	INTRON	INTRON	STRN3	ENSG00000196792.12	ENST00000355683.9:ENST00000357479.10:ENST00000555358.5:ENST00000556577.1:ENST00000554991.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	16	133	2	1.38187	1.95213	2.52239	0.0180058	0.00126655	0.114436	0.0325433
chr1	167237415	167237515	245014	0	+	0.32	(0.28,0.32]	chr1	29245	161	INTRON	INTRON	POU2F1	ENSG00000143190.23	ENST00000559038.5:ENST00000367866.7:ENST00000557909.5:ENST00000271411.8:ENST00000429375.6:ENST00000560232.6:ENST00000442313.5:ENST00000367865.5:ENST00000492850.5:ENST00000541643.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	47	2	1.71442	1.952085	2.18975	0.0776042	0.0454351	0.196285	0.164236
chr7	97163114	97163214	3357415	0	+	0.3	(0.28,0.32]	chr7	313218	199	INTRON	INTRON	SDHAF3	ENSG00000196636.8	ENST00000432641.3:ENST00000360382.4:ENST00000479853.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	47	2	1.71442	1.952085	2.18975	0.0776042	0.0454351	0.196285	0.164236
chr2	235510435	235510535	1041499	0	+	0.42	(0.408,0.44]	chr2	111217	152	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	50	2	1.69172	1.9520499999999998	2.21238	0.0486032	0.0193525	0.153946	0.119831
chr19	46610686	46610782	7081912	0	+	0.291667	(0.28,0.32]	chr19	708624	17	UTR3	UTR3:EXON_MRNA	CALM3	ENSG00000160014.17	ENST00000291295.14:ENST00000486500.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	87	2	1.93544	1.9519250000000001	1.96841	0.0276828	0.0124199	0.123904	0.0973643
chr22	35400948	35401026	7508902	0	+	0.5	(0.476,0.515]	chr22	766442	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MCM5	ENSG00000100297.16	ENST00000451351.5:ENST00000382011.9:ENST00000216122.9:ENST00000417343.1:ENST00000416905.1:ENST00000444778.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	69	2	1.58842	1.9518550000000001	2.31529	0.0406588	0.00614783	0.161534	0.0676501
chr1	88709010	88709110	156016	0	+	0.34	(0.32,0.35]	chr1	17045	240	INTRON	INTRON	PKN2	ENSG00000065243.20	ENST00000316005.11:ENST00000370521.8:ENST00000370513.9	protein_coding	protein_coding	protein_coding	protein_coding	6	70	2	1.92705	1.951795	1.97654	0.0267365	0.0199113	0.123349	0.120668
chr9	37187953	37188053	4118336	0	+	0.26	[0,0.28]	chr9	375389	10	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000461038.5:ENST00000488607.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	92	2	1.56529	1.95177	2.33825	0.0363075	0.0195228	0.153238	0.109483
chr9	37125024	37125122	4117700	0	+	0.5	(0.476,0.515]	chr9	375364	30	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000322831.6:ENST00000461038.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	49	2	1.58335	1.95168	2.32001	0.0640461	0.0136217	0.177882	0.101682
chr22	19511273	19511372	7477162	0	+	0.333333	(0.32,0.35]	chr22	762458	22	INTRON	INTRON	CDC45	ENSG00000093009.11	ENST00000407835.6:ENST00000437685.6:ENST00000438587.6:ENST00000672837.1:ENST00000263201.7:ENST00000404724.7:ENST00000471470.1:ENST00000671972.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	15	173	2	1.67228	1.9516550000000001	2.23103	0.0107071	0.00169897	0.0919603	0.0372748
chr14	103341945	103342045	5825585	0	+	0.33	(0.32,0.35]	chr14	552769	10	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	EIF5	ENSG00000100664.11	ENST00000216554.8:ENST00000392715.6:ENST00000558506.1:ENST00000561406.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	20	225	2	1.89222	1.95164	2.01106	0.00356025	0.00182983	0.053114	0.0396801
chr1	6592288	6592385	368141	0	-	0.515464	(0.515,0.57]	chr1	43243	17	UTR3	UTR3:EXON_MRNA	KLHL21	ENSG00000162413.17	ENST00000377663.3:ENST00000377658.8	protein_coding	protein_coding	protein_coding	protein_coding	9	75	2	1.38593	1.9515900000000002	2.51725	0.0554883	8.36453e-4	0.165463	0.0263691
chr4	2559736	2559836	1912747	0	+	0.59	(0.57,1]	chr4	191976	222	INTRON	INTRON	RNF4:FAM193A	ENSG00000063978.16:ENSG00000125386.16	ENST00000508235.1:ENST00000637812.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	30	2	1.87901	1.95146	2.02391	0.0339274	0.0152867	0.134508	0.108569
chr22	21426134	21426233	7481260	0	+	0.414141	(0.408,0.44]	chr22	763209	50	INTRON	INTRON	HIC2	ENSG00000169635.10	ENST00000407464.7:ENST00000407598.2	protein_coding	protein_coding	protein_coding	protein_coding	32	292	2	1.30993	1.95142	2.59291	0.0174794	1.94032e-5	0.104823	0.00338719
chr17	63776574	63776673	6660982	0	+	0.343434	(0.32,0.35]	chr17	649943	10	INTRON	INTRON	DDX42	ENSG00000198231.14	ENST00000581135.5:ENST00000578681.5:ENST00000583590.5:ENST00000389924.7:ENST00000359353.9	protein_coding	protein_coding	protein_coding	protein_coding	7	80	2	1.80487	1.9514	2.09793	0.0210603	0.0156788	0.122559	0.101453
chr5	28905621	28905720	2330806	0	+	0.515152	(0.476,0.515]	chr5	225135	951	INTRON	INTRON	LINC02109	ENSG00000259786.7	ENST00000658190.1	lncRNA	lncRNA	lncRNA	lncRNA	10	97	2	1.90822	1.951395	1.99457	0.009924	0.00708879	0.0877296	0.0722268
chrX	113954699	113954799	7867586	0	-	0.27	[0,0.28]	chrX	801544	3385	EXON_LNCRNA	EXON_LNCRNA:INTRON	XACT	ENSG00000241743.4	ENST00000468762.3:ENST00000674361.1	lncRNA	lncRNA	lncRNA	lncRNA	4	61	2	1.84147	1.9513949999999998	2.06132	0.0610416	0.0408268	0.193277	0.1451
chr7	111431080	111431180	3622797	0	-	0.37	(0.35,0.378]	chr7	337108	383	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000452895.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding	7	75	2	1.7339	1.95125	2.1686	0.0260366	0.0116706	0.133676	0.0891208
chr16	1359183	1359279	6274237	0	+	0.416667	(0.408,0.44]	chr16	599252	9	INTRON	INTRON	GNPTG	ENSG00000090581.11	ENST00000204679.9:ENST00000526820.5:ENST00000683366.1:ENST00000527168.6:ENST00000683887.1:ENST00000529110.2:ENST00000684126.1:ENST00000529957.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	57	2	1.84301	1.95124	2.05947	0.0333232	0.0174311	0.134145	0.112689
chr2	58220297	58220396	1126540	0	-	0.424242	(0.408,0.44]	chr2	120943	25	INTRON	INTRON	FANCL	ENSG00000115392.13	ENST00000696400.1:ENST00000403295.8:ENST00000696492.1:ENST00000427708.7:ENST00000696314.1:ENST00000696315.1:ENST00000696454.1:ENST00000696508.1:ENST00000696548.1:ENST00000696542.1:ENST00000696319.1:ENST00000403676.6:ENST00000696433.1:ENST00000696434.1:ENST00000696499.1:ENST00000696564.1:ENST00000402135.8:ENST00000696546.1:ENST00000233741.9:ENST00000696316.1:ENST00000696378.1:ENST00000696435.1:ENST00000696493.1:ENST00000696543.1:ENST00000696544.1:ENST00000696545.1:ENST00000696565.1:ENST00000696620.1:ENST00000696621.1:ENST00000696635.1:ENST00000696364.1:ENST00000696634.1:ENST00000696317.1:ENST00000696622.1:ENST00000696467.1:ENST00000696547.1:ENST00000449070.6:ENST00000696305.1:ENST00000417361.2:ENST00000696338.1:ENST00000696361.1:ENST00000696318.1:ENST00000696371.1:ENST00000696409.1:ENST00000696410.1:ENST00000696455.1:ENST00000696468.1:ENST00000696527.1:ENST00000696567.1:ENST00000696324.1:ENST00000696566.1:ENST00000696623.1:ENST00000446381.6:ENST00000696469.1:ENST00000696624.1:ENST00000696411.1:ENST00000470506.2:ENST00000696358.1:ENST00000696373.1:ENST00000696394.1:ENST00000696320.1:ENST00000696395.1:ENST00000696341.1:ENST00000696340.1:ENST00000696374.1:ENST00000696396.1:ENST00000696342.1:ENST00000696325.1:ENST00000696399.1:ENST00000696398.1:ENST00000696306.1:ENST00000696397.1:ENST00000696360.1:ENST00000696344.1:ENST00000696343.1:ENST00000696362.1:ENST00000696528.1:ENST00000696326.1:ENST00000696625.1:ENST00000696510.1:ENST00000696438.1:ENST00000696496.1:ENST00000696509.1:ENST00000696569.1:ENST00000696457.1:ENST00000696458.1:ENST00000696473.1:ENST00000696495.1:ENST00000696415.1:ENST00000696472.1:ENST00000696459.1:ENST00000696416.1:ENST00000696530.1:ENST00000696460.1:ENST00000696570.1:ENST00000696531.1:ENST00000696307.1:ENST00000696345.1:ENST00000696377.1:ENST00000696417.1:ENST00000696594.1:ENST00000696595.1:ENST00000696379.1:ENST00000696346.1:ENST00000696380.1:ENST00000696347.1:ENST00000696461.1:ENST00000696596.1:ENST00000696549.1:ENST00000696597.1:ENST00000696550.1:ENST00000696598.1:ENST00000696321.1:ENST00000696476.1:ENST00000696477.1:ENST00000696511.1:ENST00000481670.3:ENST00000696403.1:ENST00000696551.1:ENST00000696308.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	57	2	1.84301	1.95124	2.05947	0.0333232	0.0174311	0.134145	0.112689
chr17	30748039	30748138	6589968	0	+	0.353535	(0.35,0.378]	chr17	640860	43	INTRON	INTRON	SUZ12P1	ENSG00000264538.7	ENST00000578070.5:ENST00000579526.5:ENST00000690405.1:ENST00000497969.6:ENST00000578195.6:ENST00000582557.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	11	115	2	1.65058	1.9512399999999999	2.2519	0.0209998	0.0020199	0.112251	0.0416115
chr1	6187610	6187709	366078	0	-	0.30303	(0.28,0.32]	chr1	43018	4	INTRON	INTRON	RPL22	ENSG00000116251.11	ENST00000234875.9:ENST00000480661.1:ENST00000497965.5:ENST00000471204.5:ENST00000465387.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	77	2	1.90249	1.9511850000000002	1.99988	0.0261803	0.0228757	0.133676	0.118056
chr12	95255353	95255452	5192478	0	+	0.272727	[0,0.28]	chr12	491014	29	INTRON	INTRON	VEZT	ENSG00000028203.19	ENST00000550803.5:ENST00000549589.5:ENST00000547611.5:ENST00000547997.5:ENST00000549002.5:ENST00000546557.5:ENST00000551746.5:ENST00000548838.5:ENST00000436874.6:ENST00000547484.5:ENST00000551472.5:ENST00000546398.5:ENST00000548455.5:ENST00000553063.5:ENST00000552660.5:ENST00000552626.5:ENST00000548245.5:ENST00000549624.5:ENST00000548822.5:ENST00000552031.5:ENST00000551994.5:ENST00000551039.5:ENST00000549192.5:ENST00000552821.5:ENST00000548371.5:ENST00000550106.5:ENST00000547894.5:ENST00000551695.5:ENST00000551356.5:ENST00000551311.5:ENST00000546365.5:ENST00000551902.5:ENST00000546445.5:ENST00000546409.5:ENST00000397792.8:ENST00000356859.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	72	2	1.84046	1.9508899999999998	2.06132	0.0408268	0.0335889	0.146709	0.1451
chr7	73202140	73202240	3331502	0	+	0.39	(0.378,0.408]	chr7	309838	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	GTF2IP4	ENSG00000233369.7	ENST00000544802.5:ENST00000453092.3	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript:transcribed_processed_pseudogene	7	71	2	1.43665	1.95087	2.46509	0.0669652	0.00287152	0.183051	0.0494641
chr18	735131	735229	6939921	0	-	0.316327	(0.28,0.32]	chr18	686461	18	INTRON	INTRON	YES1	ENSG00000176105.14	ENST00000584307.5:ENST00000314574.5:ENST00000577961.5	protein_coding	protein_coding	protein_coding	protein_coding	15	180	2	1.40468	1.95085	2.49702	0.0335142	4.57941e-4	0.134145	0.0193643
chr1	6524481	6524579	367811	0	-	0.581633	(0.57,1]	chr1	43178	33	UTR3	UTR3:EXON_MRNA	NOL9	ENSG00000162408.11	ENST00000377705.6	protein_coding	protein_coding	protein_coding	protein_coding	9	46	2	1.79898	1.95079	2.1026	0.0206524	0.00326268	0.122348	0.0508595
chr6	7143804	7143903	2798725	0	+	0.373737	(0.35,0.378]	chr6	263733	26	INTRON	INTRON	RREB1	ENSG00000124782.21	ENST00000379933.7:ENST00000491191.5:ENST00000471433.5:ENST00000379938.7:ENST00000467782.5:ENST00000349384.10:ENST00000334984.10:ENST00000475946.5:ENST00000483150.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	54	2	1.87717	1.950705	2.02424	0.0555068	0.0164934	0.165463	0.110301
chr8	11803518	11803617	3702528	0	+	0.313131	(0.28,0.32]	chr8	343484	1	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	FDFT1	ENSG00000079459.13	ENST00000538689.4:ENST00000615631.4:ENST00000618539.4:ENST00000530337.5:ENST00000623368.3:ENST00000446331.6:ENST00000443614.6:ENST00000220584.9:ENST00000525607.5:ENST00000525283.5:ENST00000529464.5:ENST00000525900.5:ENST00000525571.1:ENST00000527045.1:ENST00000528812.5:ENST00000622850.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	23	198	2	1.21298	1.950685	2.68839	0.0254706	0.00201131	0.133676	0.04086
chr9	111372981	111373069	4314135	0	-	0.397727	(0.378,0.408]	chr9	396623	4	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ECPAS	ENSG00000136813.15	ENST00000684092.1:ENST00000338205.9:ENST00000259335.8	protein_coding	protein_coding	protein_coding	protein_coding	7	71	2	1.71619	1.950655	2.18512	0.0300647	0.00902136	0.129153	0.0851259
chrY	11196273	11196373	7929975	0	-	0.38	(0.378,0.408]	chrY	807176	328	INTRON	INTRON	ENSG00000278212	ENSG00000278212.3	ENST00000652671.1:ENST00000651211.2:ENST00000687423.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	7	71	2	1.71619	1.950655	2.18512	0.0300647	0.00902136	0.129153	0.0851259
chr3	15051861	15051958	1619904	0	-	0.505155	(0.476,0.515]	chr3	167435	21	UTR3	UTR3:EXON_MRNA:INTRON	MRPS25	ENSG00000131368.9	ENST00000695375.1:ENST00000695376.1:ENST00000695377.1:ENST00000695378.1:ENST00000695379.1:ENST00000695380.1:ENST00000695381.1:ENST00000695382.1:ENST00000496484.2:ENST00000695334.1:ENST00000695384.1:ENST00000695322.1:ENST00000447299.2:ENST00000695383.1:ENST00000474866.2:ENST00000695385.1:ENST00000695386.1:ENST00000420267.6:ENST00000695387.1:ENST00000695388.1:ENST00000695389.1:ENST00000695390.1:ENST00000695391.1:ENST00000695392.1:ENST00000449354.7:ENST00000695393.1:ENST00000695394.1:ENST00000253686.7:ENST00000695395.1:ENST00000695323.1:ENST00000444840.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	108	2	1.75116	1.950525	2.14989	0.00687667	0.00611105	0.0749442	0.0676501
chr3	143050040	143050139	1529593	0	+	0.373737	(0.35,0.378]	chr3	159459	64	INTRON	INTRON	U2SURP	ENSG00000163714.18	ENST00000488497.7:ENST00000473835.7:ENST00000493598.6:ENST00000463563.6:ENST00000480029.5:ENST00000467348.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	54	2	1.71046	1.9504000000000001	2.19034	0.0441269	0.023941	0.162255	0.119443
chr7	107919259	107919355	3379915	0	+	0.322917	(0.32,0.35]	chr7	316635	1	UTR3	UTR3:EXON_MRNA	DLD	ENSG00000091140.15	ENST00000417551.5:ENST00000415325.5:ENST00000440410.5:ENST00000437604.6:ENST00000205402.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	113	2	1.79633	1.950335	2.10434	0.0177594	0.00423324	0.105629	0.0595557
chr19	1642965	1643064	7113018	0	-	0.484848	(0.476,0.515]	chr19	714651	102	INTRON	INTRON	TCF3	ENSG00000071564.17	ENST00000344749.9:ENST00000611869.5:ENST00000262965.12:ENST00000588136.7:ENST00000453954.6:ENST00000395423.7:ENST00000587235.6:ENST00000586318.1	protein_coding	protein_coding	protein_coding	protein_coding	6	56	2	1.73688	1.9503249999999999	2.16377	0.0252731	0.0243026	0.133676	0.12011
chr2	61491834	61491934	1130733	0	-	0.45	(0.44,0.476]	chr2	121550	4	SS5_PROX	SS5_PROX:INTRON	XPO1	ENSG00000082898.19	ENST00000677110.1:ENST00000678113.1:ENST00000676553.1:ENST00000677556.1:ENST00000677814.1:ENST00000676771.1:ENST00000677803.1:ENST00000677239.1:ENST00000678790.1:ENST00000677928.1:ENST00000678182.1:ENST00000677150.1:ENST00000678172.1:ENST00000678360.1:ENST00000678081.1:ENST00000676889.1:ENST00000676783.1:ENST00000679035.1:ENST00000677422.1:ENST00000677417.1:ENST00000677813.1:ENST00000676999.1:ENST00000676667.1:ENST00000678263.1:ENST00000678877.1:ENST00000677933.1:ENST00000680228.1:ENST00000677289.1:ENST00000677190.1:ENST00000481073.6:ENST00000677476.1:ENST00000469337.2:ENST00000401558.7:ENST00000428210.5:ENST00000677290.1:ENST00000677850.1:ENST00000676778.1:ENST00000451765.6:ENST00000676789.1:ENST00000678741.1:ENST00000404992.6:ENST00000406957.5:ENST00000677157.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	96	2	1.69823	1.9502449999999998	2.20226	0.0218548	0.00238044	0.11491	0.0449397
chr9	33998397	33998494	4245338	0	-	0.278351	[0,0.28]	chr9	390468	15	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	UBAP2	ENSG00000137073.24	ENST00000379238.7:ENST00000683659.1:ENST00000682239.1:ENST00000683140.1:ENST00000682209.1:ENST00000681980.1:ENST00000360802.6:ENST00000683252.1:ENST00000684158.1:ENST00000682914.1:ENST00000683717.1:ENST00000379239.9:ENST00000683084.1:ENST00000684754.1:ENST00000629575.2:ENST00000684298.1:ENST00000412543.6:ENST00000480885.5:ENST00000459988.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	115	2	1.8592	1.9502	2.0412	0.0250628	0.0106194	0.12011	0.0914726
chr11	73724186	73724286	4985421	0	-	0.33	(0.32,0.35]	chr11	470886	29	INTRON	INTRON	RAB6A	ENSG00000175582.20	ENST00000310653.10:ENST00000336083.8:ENST00000541973.5:ENST00000536566.5:ENST00000541588.5:ENST00000545625.5:ENST00000540771.5:ENST00000537446.5:ENST00000400470.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	50	2	1.59364	1.9501849999999998	2.30673	0.0584434	0.0413426	0.167723	0.161557
chr6	132783932	132784010	3222675	0	-	0.384615	(0.378,0.408]	chr6	299621	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	SLC18B1	ENSG00000146409.12	ENST00000275227.9:ENST00000647932.1:ENST00000650278.1:ENST00000650136.1:ENST00000650298.1:ENST00000367918.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	79	2	1.8252	1.950135	2.07507	0.0619563	0.00284959	0.174514	0.0494641
chr1	198267618	198267717	288771	0	+	0.474747	(0.44,0.476]	chr1	33194	30	INTRON	INTRON	NEK7	ENSG00000151414.15	ENST00000367385.9:ENST00000538004.5	protein_coding	protein_coding	protein_coding	protein_coding	5	43	2	1.60176	1.95009	2.29842	0.0552483	0.0389597	0.165463	0.160861
chr12	53465352	53465431	5143029	0	+	0.455696	(0.44,0.476]	chr12	485423	1	INTRON	INTRON	PCBP2	ENSG00000197111.16	ENST00000546463.6:ENST00000437231.5:ENST00000447282.5:ENST00000359282.9:ENST00000549863.5:ENST00000359462.9:ENST00000552296.6:ENST00000552819.5:ENST00000455667.7:ENST00000439930.7:ENST00000548933.5:ENST00000546652.6:ENST00000562264.5:ENST00000550585.5:ENST00000547987.2:ENST00000553064.6:ENST00000547859.2:ENST00000549272.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	43	2	1.60176	1.95009	2.29842	0.0552483	0.0389597	0.165463	0.160861
chr7	26194482	26194578	3506166	0	-	0.53125	(0.515,0.57]	chr7	327165	4	INTRON	INTRON	HNRNPA2B1	ENSG00000122566.22	ENST00000679318.1:ENST00000677339.1:ENST00000678501.1:ENST00000676903.1:ENST00000608362.2:ENST00000677631.1:ENST00000676749.1:ENST00000677574.1:ENST00000679123.1:ENST00000677906.1:ENST00000476233.2:ENST00000677669.1:ENST00000677321.1:ENST00000678277.1:ENST00000677571.1:ENST00000679124.1:ENST00000676932.1:ENST00000678973.1:ENST00000678183.1:ENST00000679021.1:ENST00000678035.1:ENST00000677075.1:ENST00000678075.1:ENST00000678631.1:ENST00000678998.1:ENST00000490912.6:ENST00000354667.8:ENST00000618183.5:ENST00000677839.1:ENST00000677037.1:ENST00000678449.1:ENST00000679001.1:ENST00000678962.1:ENST00000676524.1:ENST00000678935.1:ENST00000678675.1:ENST00000676746.1:ENST00000356674.8:ENST00000678431.1:ENST00000678697.1:ENST00000678779.1:ENST00000676497.1:ENST00000677396.1:ENST00000360787.8:ENST00000679243.1:ENST00000677656.1:ENST00000463181.5:ENST00000678884.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	112	877	2	1.79012	1.9500199999999999	2.10992	2.14349e-4	4.75923e-5	0.0128514	0.00595222
chr1	32173877	32173977	64129	0	+	0.47	(0.44,0.476]	chr1	8150	31	UTR3	UTR3:EXON_MRNA	KPNA6	ENSG00000025800.14	ENST00000373625.8	protein_coding	protein_coding	protein_coding	protein_coding	17	160	2	1.7735	1.950005	2.12651	0.0062471	0.00106845	0.0683706	0.0300133
chr2	190914558	190914657	959825	0	+	0.232323	[0,0.28]	chr2	104198	8	INTRON	INTRON	GLS	ENSG00000115419.13	ENST00000320717.8:ENST00000338435.8:ENST00000417154.5:ENST00000461965.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	62	2	1.56918	1.949865	2.33055	0.062338	0.0481076	0.175343	0.171525
chr20	38421575	38421670	7342165	0	-	0.536842	(0.515,0.57]	chr20	748299	7	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SNHG17	ENSG00000196756.14	ENST00000654008.2:ENST00000658076.1:ENST00000662982.2:ENST00000667188.1:ENST00000456953.7:ENST00000654183.2:ENST00000663540.2:ENST00000651115.2:ENST00000667835.1:ENST00000660885.2:ENST00000662213.1:ENST00000665233.2:ENST00000666268.2:ENST00000665735.1:ENST00000660558.2:ENST00000691280.1:ENST00000658488.2:ENST00000688336.1:ENST00000668054.2:ENST00000690441.1:ENST00000655520.2:ENST00000687490.1:ENST00000664626.1:ENST00000658051.1:ENST00000668042.1:ENST00000686971.1:ENST00000663187.1:ENST00000669114.1:ENST00000653343.1:ENST00000666225.1:ENST00000659186.1:ENST00000671309.1:ENST00000669405.1:ENST00000666806.1:ENST00000657665.1:ENST00000667282.1:ENST00000655311.1:ENST00000657868.1:ENST00000663534.1:ENST00000658141.1:ENST00000689917.1:ENST00000664073.2:ENST00000653697.1:ENST00000656320.1:ENST00000686814.1:ENST00000417578.7:ENST00000654853.1:ENST00000665440.1:ENST00000659102.1:ENST00000436764.7:ENST00000668482.2:ENST00000671249.1:ENST00000655692.1:ENST00000662568.1:ENST00000659255.1:ENST00000665693.1:ENST00000693250.1:ENST00000691368.1:ENST00000693227.1:ENST00000690361.1:ENST00000670051.1:ENST00000667912.1:ENST00000693665.1:ENST00000665181.1:ENST00000687532.1:ENST00000691386.1:ENST00000693684.1:ENST00000666331.1:ENST00000669480.1:ENST00000658905.1:ENST00000661252.1:ENST00000669137.1:ENST00000688133.1:ENST00000689414.1:ENST00000691314.1:ENST00000669033.1:ENST00000686145.1:ENST00000653938.1:ENST00000663784.1:ENST00000665003.1:ENST00000659400.1:ENST00000653753.1:ENST00000449469.5:ENST00000654389.1:ENST00000657429.1:ENST00000667412.1:ENST00000654092.1:ENST00000653277.1:ENST00000663955.1:ENST00000664964.1:ENST00000658324.1:ENST00000656023.1:ENST00000692262.1:ENST00000414142.5:ENST00000659753.1:ENST00000670958.1:ENST00000657216.2:ENST00000664636.1:ENST00000657843.1:ENST00000660189.1:ENST00000660064.1:ENST00000655198.1:ENST00000662572.1:ENST00000423536.6:ENST00000658455.1:ENST00000666419.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	5	42	2	1.7492	1.9498550000000001	2.15051	0.0382504	0.0238113	0.15832	0.118889
chr21	45472220	45472318	7420181	0	+	0.530612	(0.515,0.57]	chr21	756421	31	INTRON	INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1:ENST00000355480.10:ENST00000359759.8	protein_coding	protein_coding	protein_coding	protein_coding	5	42	2	1.7492	1.9498550000000001	2.15051	0.0382504	0.0238113	0.15832	0.118889
chr8	55963137	55963236	3755180	0	+	0.494949	(0.476,0.515]	chr8	349299	75	INTRON	INTRON	LYN	ENSG00000254087.8	ENST00000519728.6:ENST00000520220.6:ENST00000420292.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	47	2	1.33919	1.94976	2.56033	0.06316	0.0287634	0.197199	0.127066
chr2	112649018	112649115	852093	0	+	0.42268	(0.408,0.44]	chr2	95574	9	INTRON	INTRON	SLC20A1	ENSG00000144136.11	ENST00000272542.8:ENST00000423633.5:ENST00000498224.5:ENST00000433924.5:ENST00000456264.5:ENST00000413135.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	16	153	2	1.61114	1.949745	2.28835	0.0148616	4.32393e-4	0.0989021	0.0186763
chr6	167907689	167907789	3035158	0	+	0.31	(0.28,0.32]	chr6	282784	4	SS5_PROX	SS5_PROX:INTRON	AFDN	ENSG00000130396.21	ENST00000683244.1:ENST00000351017.9:ENST00000344191.8:ENST00000392112.5:ENST00000392108.7:ENST00000400822.7:ENST00000447894.6:ENST00000366809.6:ENST00000366806.6:ENST00000423229.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	52	2	1.76293	1.9497200000000001	2.13651	0.0766478	0.0265696	0.196164	0.134088
chr9	133259718	133259818	4369873	0	-	0.56	(0.515,0.57]	chr9	402052	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ABO	ENSG00000175164.16	ENST00000679909.1:ENST00000453660.4:ENST00000647353.1:ENST00000611156.4:ENST00000538324.2:ENST00000651471.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	58	2	1.7407	1.9496799999999999	2.15866	0.0242347	0.0100547	0.130613	0.0848452
chrX	123969795	123969895	7716833	0	+	0.51	(0.476,0.515]	chrX	789462	60	INTRON	INTRON	STAG2	ENSG00000101972.20	ENST00000394477.5:ENST00000218089.13:ENST00000455404.5:ENST00000483575.5:ENST00000687810.1:ENST00000687071.1:ENST00000469481.1:ENST00000458700.5:ENST00000371160.5:ENST00000435103.5:ENST00000687852.1:ENST00000371145.8:ENST00000692982.1:ENST00000371157.7:ENST00000691035.1:ENST00000686802.1:ENST00000691383.1:ENST00000686127.1:ENST00000371144.7:ENST00000458176.5:ENST00000466748.5:ENST00000471107.1:ENST00000428941.5:ENST00000435215.5:ENST00000394478.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	68	2	1.68907	1.94966	2.21025	0.0296007	0.00913757	0.142135	0.0812335
chr11	57785241	57785341	4793366	0	+	0.36	(0.35,0.378]	chr11	443721	32	INTRON	INTRON	ENSG00000288534:CTNND1	ENSG00000288534.1:ENSG00000198561.16	ENST00000673781.1:ENST00000673810.1:ENST00000674116.1:ENST00000674060.1:ENST00000524630.5:ENST00000529919.5:ENST00000533189.1:ENST00000682741.1:ENST00000358694.10:ENST00000361332.8:ENST00000361391.10:ENST00000361796.9:ENST00000415361.6:ENST00000426142.6:ENST00000428599.6:ENST00000525902.5:ENST00000526357.5:ENST00000526772.5:ENST00000527467.5:ENST00000528232.5:ENST00000528621.5:ENST00000529526.5:ENST00000529873.5:ENST00000529986.5:ENST00000530094.5:ENST00000530748.5:ENST00000531014.5:ENST00000532245.5:ENST00000532463.5:ENST00000532649.5:ENST00000532787.5:ENST00000532844.5:ENST00000533667.5:ENST00000534579.5:ENST00000399050.10:ENST00000526938.5:ENST00000531007.2:ENST00000674015.1:ENST00000673826.1:ENST00000673683.1:ENST00000674106.1:ENST00000530068.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	95	2	1.47679	1.94964	2.42249	0.0466814	0.0016343	0.151623	0.0372392
chr3	37173126	37173226	1656605	0	-	0.5	(0.476,0.515]	chr3	170029	1	SS3_PROX	SS3_PROX:INTRON	LRRFIP2	ENSG00000093167.18	ENST00000336686.9:ENST00000354379.8:ENST00000421276.6:ENST00000396428.6:ENST00000440230.5:ENST00000416425.5:ENST00000461672.5:ENST00000438374.5:ENST00000452742.5:ENST00000436858.5:ENST00000434749.5:ENST00000482466.5:ENST00000490597.5:ENST00000496825.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	59	2	1.69138	1.949635	2.20789	0.0481165	0.00820497	0.153019	0.081115
chr8	111021904	111022003	4027417	0	-	0.444444	(0.44,0.476]	chr8	367856	65	INTRON	INTRON	LINC01608	ENSG00000253877.6	ENST00000670392.1:ENST00000658597.1:ENST00000662310.1:ENST00000671489.1:ENST00000668858.1:ENST00000669698.1:ENST00000665803.1:ENST00000658028.1:ENST00000664704.1:ENST00000661954.1:ENST00000661561.1:ENST00000658081.1:ENST00000667145.1:ENST00000658119.1:ENST00000524283.5:ENST00000669893.1:ENST00000660015.1:ENST00000668956.1:ENST00000657323.1:ENST00000663408.1:ENST00000653924.1:ENST00000659834.1:ENST00000658508.1:ENST00000669744.1:ENST00000658733.1:ENST00000657532.1:ENST00000665011.1:ENST00000523557.2:ENST00000669997.1:ENST00000663666.1:ENST00000660667.1	lncRNA	lncRNA	lncRNA	lncRNA	15	134	2	1.59237	1.94963	2.30689	0.00945698	0.00187835	0.0862627	0.039073
chr16	58625194	58625294	6496339	0	-	0.54	(0.515,0.57]	chr16	628650	4	SS3_PROX	SS3_PROX:INTRON	CNOT1	ENSG00000125107.19	ENST00000317147.10:ENST00000569240.5:ENST00000567188.5:ENST00000441024.6:ENST00000565605.5:ENST00000564557.1:ENST00000569916.1:ENST00000569020.5:ENST00000568158.1:ENST00000569263.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	49	2	1.63907	1.949595	2.26012	0.0350277	0.0160033	0.137535	0.109464
chr7	155649609	155649708	3451944	0	+	0.414141	(0.408,0.44]	chr7	322642	43	INTRON	INTRON	RBM33	ENSG00000184863.11	ENST00000287912.7:ENST00000401878.8:ENST00000392759.7	protein_coding	protein_coding	protein_coding	protein_coding	5	53	2	1.85305	1.94958	2.04611	0.0543543	0.016628	0.182243	0.102621
chrX	3825915	3826007	7746837	0	-	0.326087	(0.32,0.35]	chrX	793076	3	INTRON	INTRON	ENSG00000285756	ENSG00000285756.2	ENST00000648217.1:ENST00000425492.5:ENST00000662024.1:ENST00000490920.2:ENST00000475317.5:ENST00000483854.6:ENST00000653447.1:ENST00000669937.1:ENST00000671495.1:ENST00000486571.1	lncRNA	lncRNA	lncRNA	lncRNA	11	124	2	1.35626	1.94957	2.54288	0.0414162	0.00151636	0.161578	0.0352794
chr8	102356575	102356675	4012190	0	-	0.48	(0.476,0.515]	chr8	367218	91	INTRON	INTRON	UBR5	ENSG00000104517.13	ENST00000520539.6:ENST00000220959.8:ENST00000521922.5	protein_coding	protein_coding	protein_coding	protein_coding	23	198	2	1.61709	1.9495649999999998	2.28204	0.00413025	9.02946e-4	0.05878	0.0278086
chr1	246016559	246016659	675796	0	-	0.31	(0.28,0.32]	chr1	79713	281	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000391836.3:ENST00000464398.1:ENST00000453676.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	63	2	1.56134	1.949525	2.33771	0.0740624	0.0142701	0.191153	0.103838
chr7	158813756	158813856	3689656	0	-	0.37	(0.35,0.378]	chr7	342421	143	INTRON	INTRON	ESYT2	ENSG00000117868.18	ENST00000251527.10:ENST00000275418.13:ENST00000652148.1:ENST00000483958.5:ENST00000497111.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	104	2	1.32095	1.9495049999999998	2.57806	0.0594109	7.61742e-4	0.16883600000000001	0.0253498
chr17	30749727	30749826	6589985	0	+	0.363636	(0.35,0.378]	chr17	640860	60	INTRON	INTRON	SUZ12P1	ENSG00000264538.7	ENST00000578070.5:ENST00000579526.5:ENST00000690405.1:ENST00000497969.6:ENST00000578195.6:ENST00000582557.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	9	95	2	1.74668	1.949485	2.15229	0.0198631	0.00545124	0.109608	0.0669407
chr8	104564736	104564836	4014479	0	-	0.51	(0.476,0.515]	chr8	367439	324	INTRON	INTRON	LRP12	ENSG00000147650.12	ENST00000424843.6:ENST00000276654.10:ENST00000520770.1:ENST00000519675.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	59	2	1.93059	1.94946	1.96833	0.023762	0.0195007	0.119967	0.118822
chr5	65926555	65926638	2370843	0	+	0.506024	(0.476,0.515]	chr5	228469	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	ERBIN	ENSG00000112851.15	ENST00000380943.6:ENST00000507490.1:ENST00000416865.6:ENST00000380935.5:ENST00000284037.10:ENST00000380938.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	66	593	2	1.83564	1.94943	2.06322	3.53672e-4	2.57357e-4	0.0168322	0.0148796
chr16	71923446	71923509	6386903	0	+	0.428571	(0.408,0.44]	chr16	614127	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	IST1	ENSG00000182149.21	ENST00000544564.5:ENST00000541571.6:ENST00000535424.5:ENST00000606369.5:ENST00000378799.11:ENST00000538565.5:ENST00000329908.12:ENST00000538850.5:ENST00000378798.9:ENST00000439924.6:ENST00000456820.2:ENST00000537571.1:ENST00000536027.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	72	2	1.83931	1.9493900000000002	2.05947	0.0333232	0.00806984	0.134145	0.0806514
chr7	10729503	10729602	3484075	0	-	0.212121	[0,0.28]	chr7	325772	1676	INTRON	INTRON	MGC4859	ENSG00000283117.1	ENST00000634803.1	lncRNA	lncRNA	lncRNA	lncRNA	5	72	2	1.94204	1.949365	1.95669	0.0544139	0.0237518	0.164972	0.129075
chr19	537946	538045	6991781	0	+	0.454545	(0.44,0.476]	chr19	692123	4	INTRON	INTRON	CDC34	ENSG00000099804.9	ENST00000215574.9:ENST00000586283.6:ENST00000607527.5:ENST00000606065.3:ENST00000606400.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	49	2	1.81595	1.94936	2.08277	0.0317953	0.0309998	0.14477	0.13151
chr13	25303455	25303555	5457182	0	+	0.35	(0.32,0.35]	chr13	522870	3	SS5_PROX	SS5_PROX:INTRON	NUP58	ENSG00000139496.17	ENST00000481980.2:ENST00000490231.6:ENST00000695571.1:ENST00000477876.2:ENST00000695572.1:ENST00000463407.6:ENST00000695573.1:ENST00000381736.8:ENST00000695583.1:ENST00000465068.5:ENST00000460326.5:ENST00000480187.5:ENST00000466694.6:ENST00000381718.8:ENST00000695575.1:ENST00000695574.1:ENST00000495460.2:ENST00000381747.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	124	2	1.72073	1.9493500000000001	2.17797	0.0228737	0.00198095	0.118056	0.0411469
chr11	31507956	31508055	4939225	0	-	0.353535	(0.35,0.378]	chr11	462601	194	INTRON	INTRON	IMMP1L	ENSG00000148950.11	ENST00000532287.6:ENST00000534812.5:ENST00000526776.5:ENST00000278200.5:ENST00000648582.1:ENST00000533642.1:ENST00000527184.5:ENST00000528161.5:ENST00000532624.5:ENST00000529749.5:ENST00000530023.5:ENST00000531693.1:ENST00000532668.1:ENST00000533921.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	90	2	1.6344	1.9493399999999999	2.26428	0.0189573	0.00831504	0.118501	0.0774402
chr15	52024895	52024995	6029078	0	+	0.43	(0.408,0.44]	chr15	574420	2	SS5_PROX	SS5_PROX:INTRON	MAPK6	ENSG00000069956.14	ENST00000560802.1:ENST00000691380.1:ENST00000558063.5:ENST00000560254.1:ENST00000681888.1:ENST00000261845.7:ENST00000680066.1:ENST00000680777.1:ENST00000558100.1:ENST00000680652.1:ENST00000558841.1:ENST00000558891.1:ENST00000560774.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	17	159	2	1.49459	1.94933	2.40407	0.0172532	3.2244e-4	0.104099	0.0159645
chr17	66344254	66344354	6662714	0	+	0.3	(0.28,0.32]	chr17	650324	43	INTRON	INTRON	PRKCA	ENSG00000154229.12	ENST00000413366.8:ENST00000578063.5:ENST00000284384.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	81	2	1.75863	1.949325	2.14002	0.0304107	0.0177071	0.130461	0.11319
chr8	129549143	129549235	4060775	0	-	0.413043	(0.408,0.44]	chr8	369652	6	INTRON	INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1:ENST00000676273.1:ENST00000667643.1:ENST00000668791.1:ENST00000663716.1:ENST00000663572.1:ENST00000676148.1:ENST00000667962.1:ENST00000674877.1:ENST00000675316.1:ENST00000674656.1:ENST00000446592.7:ENST00000667341.1:ENST00000675186.1:ENST00000652971.1:ENST00000661447.1:ENST00000674863.1:ENST00000675498.1:ENST00000675527.1:ENST00000676108.1:ENST00000657647.1:ENST00000675589.1:ENST00000675913.1:ENST00000675109.1:ENST00000671632.1:ENST00000671311.1:ENST00000676099.1:ENST00000660652.1:ENST00000675522.1:ENST00000675183.1:ENST00000675044.1:ENST00000675435.1:ENST00000674639.1:ENST00000676069.1:ENST00000675532.1:ENST00000674762.1:ENST00000523151.6:ENST00000675948.1:ENST00000665364.1:ENST00000657251.1:ENST00000675166.1:ENST00000674883.1:ENST00000675867.1:ENST00000674580.1:ENST00000675393.1:ENST00000520048.1:ENST00000674906.1:ENST00000676030.1:ENST00000670588.1:ENST00000675072.1:ENST00000664936.1:ENST00000652914.1:ENST00000657069.1	lncRNA	lncRNA	lncRNA	lncRNA	5	50	2	1.6306	1.9492600000000002	2.26792	0.0544158	0.0179973	0.182272	0.106756
chr22	21977473	21977571	7561974	0	-	0.377551	(0.35,0.378]	chr22	773552	9	INTRON	INTRON	TOP3B	ENSG00000100038.20	ENST00000357179.10:ENST00000457179.5:ENST00000444502.5:ENST00000398793.6:ENST00000424393.5:ENST00000437929.5:ENST00000430142.5:ENST00000456075.5:ENST00000449704.5:ENST00000437103.1:ENST00000434517.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	15	140	2	1.22531	1.9492399999999999	2.67317	0.0438971	4.65906e-4	0.149302	0.0195589
chr7	102380832	102380931	3371248	0	+	0.30303	(0.28,0.32]	chr7	315446	3	INTRON	INTRON	PRKRIP1	ENSG00000128563.13	ENST00000477886.5:ENST00000469763.5:ENST00000482549.5:ENST00000496391.5:ENST00000482465.5:ENST00000462601.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	87	2	1.57779	1.9491550000000002	2.32052	0.0502605	0.00612675	0.156383	0.0708525
chr2	167849518	167849618	1258295	0	-	0.45	(0.44,0.476]	chr2	133322	339	INTRON	INTRON	B3GALT1-AS1	ENSG00000235335.3	ENST00000430546.2:ENST00000657553.1:ENST00000670221.1:ENST00000436982.2	lncRNA	lncRNA	lncRNA	lncRNA	8	76	2	1.63371	1.949115	2.26452	0.0271664	0.00654074	0.123904	0.0735539
chr3	47161828	47161928	1681583	0	-	0.49	(0.476,0.515]	chr3	171624	348	INTRON	INTRON	SETD2	ENSG00000181555.22	ENST00000691544.1:ENST00000638947.2:ENST00000409792.4:ENST00000412450.1	protein_coding	protein_coding	protein_coding	protein_coding	18	168	2	1.80195	1.9491049999999999	2.09626	0.00357046	0.00169362	0.0548435	0.0371596
chr7	119893902	119894001	3630280	0	-	0.313131	(0.28,0.32]	chr7	337335	927	INTRON	INTRON	LINC02476	ENSG00000225546.6	ENST00000660268.1:ENST00000431071.5:ENST00000426413.2	lncRNA	lncRNA	lncRNA	lncRNA	9	111	2	1.63866	1.9490850000000002	2.25951	0.0317527	0.00397414	0.13151	0.0577209
chr5	55949282	55949382	2623136	0	-	0.49	(0.476,0.515]	chr5	249207	3	SS3_PROX	SS3_PROX:INTRON	IL6ST	ENSG00000134352.20	ENST00000381298.7:ENST00000336909.9:ENST00000381287.8:ENST00000651614.1:ENST00000503773.6:ENST00000502326.7:ENST00000381294.7:ENST00000583149.1:ENST00000381293.6:ENST00000381286.7:ENST00000522633.2:ENST00000423954.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	49	2	1.92984	1.949085	1.96833	0.0466474	0.0195007	0.151522	0.119967
chr7	105047604	105047704	3374958	0	+	0.34	(0.32,0.35]	chr7	315877	62	INTRON	INTRON	KMT2E	ENSG00000005483.22	ENST00000622386.2:ENST00000257745.9:ENST00000334884.9:ENST00000311117.8:ENST00000478990.5:ENST00000495267.5:ENST00000476671.5:ENST00000667857.1:ENST00000474203.5:ENST00000482560.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	80	2	1.40199	1.9490450000000001	2.4961	0.0432025	0.00967886	0.162255	0.0828038
chr1	36245115	36245215	73138	0	+	0.39	(0.378,0.408]	chr1	9371	193	INTRON	INTRON	THRAP3	ENSG00000054118.15	ENST00000469141.6:ENST00000648638.1:ENST00000354618.10	protein_coding	protein_coding	protein_coding	protein_coding	7	71	2	1.76	1.948985	2.13797	0.023484	0.0124882	0.128531	0.0923444
chr1	227317369	227317462	651710	0	-	0.204301	[0,0.28]	chr1	77115	3	UTR5	UTR5:EXON_MRNA	CDC42BPA	ENSG00000143776.20	ENST00000366766.8:ENST00000366769.7:ENST00000334218.9	protein_coding	protein_coding	protein_coding	protein_coding	10	131	2	1.64592	1.948985	2.25205	0.0175028	0.0119684	0.113066	0.0899583
chr13	114285076	114285170	5550861	0	+	0.393617	(0.378,0.408]	chr13	530560	1	EXON_MRNA	EXON_MRNA:INTRON	UPF3A	ENSG00000169062.15	ENST00000375299.8:ENST00000351487.5:ENST00000484246.5:ENST00000480362.5:ENST00000474056.5:ENST00000493727.5:ENST00000619079.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	71	2	1.76	1.948985	2.13797	0.023484	0.0124882	0.128531	0.0923444
chr16	23877802	23877902	6324178	0	+	0.42	(0.408,0.44]	chr16	605697	86	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000645517.1:ENST00000498739.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	26	233	2	1.63868	1.94894	2.2592	0.0033376	6.11345e-4	0.0528972	0.0227431
chr5	179623229	179623325	2779780	0	-	0.739583	(0.57,1]	chr5	262337	2	UTR5	UTR5:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HNRNPH1	ENSG00000169045.17	ENST00000329433.11:ENST00000393432.9:ENST00000356731.9:ENST00000442819.6:ENST00000514332.5:ENST00000514731.5:ENST00000503105.5:ENST00000504779.6:ENST00000508103.5:ENST00000506721.5:ENST00000523137.5:ENST00000505811.5:ENST00000510431.5:ENST00000519056.5:ENST00000504348.5:ENST00000513225.5:ENST00000513972.5:ENST00000519707.5:ENST00000519455.5:ENST00000515158.5:ENST00000521116.5:ENST00000505087.1:ENST00000515714.5:ENST00000512273.5:ENST00000503664.1:ENST00000515446.1:ENST00000513230.1:ENST00000522256.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	36	165	2	1.68688	1.948865	2.21085	9.70262e-4	7.53856e-5	0.0286926	0.00777227
chr13	95213175	95213274	5638989	0	-	0.50505	(0.476,0.515]	chr13	537151	20	INTRON	INTRON	ABCC4	ENSG00000125257.16	ENST00000645237.2:ENST00000643051.1:ENST00000643842.1:ENST00000646439.1:ENST00000643816.1:ENST00000536256.3:ENST00000643556.1:ENST00000629385.1:ENST00000642524.1:ENST00000645532.1:ENST00000644471.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	49	2	1.68092	1.948845	2.21677	0.0474026	0.0207026	0.169265	0.110999
chr4	1878524	1878624	1910641	0	+	0.48	(0.476,0.515]	chr4	191707	66	INTRON	INTRON	NSD2	ENSG00000109685.19	ENST00000508803.6:ENST00000507820.5:ENST00000508355.5:ENST00000514045.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	49	2	1.68092	1.948845	2.21677	0.0474026	0.0207026	0.169265	0.110999
chr6	147830418	147830518	2992303	0	+	0.5	(0.476,0.515]	chr6	280177	930	INTRON	INTRON	ENSG00000227681	ENSG00000227681.5	ENST00000427015.1	lncRNA	lncRNA	lncRNA	lncRNA	5	49	2	1.68092	1.948845	2.21677	0.0474026	0.0207026	0.169265	0.110999
chr22	23273974	23274074	7484151	0	+	0.53	(0.515,0.57]	chr22	763590	2	SS5_PROX	SS5_PROX:INTRON	BCR	ENSG00000186716.21	ENST00000359540.7:ENST00000305877.13:ENST00000427791.1	protein_coding	protein_coding	protein_coding	protein_coding	11	90	2	1.73168	1.9487	2.16572	0.0119342	0.0029374	0.0962115	0.0483262
chr10	28568120	28568220	4414155	0	+	0.29	(0.28,0.32]	chr10	407148	297	INTRON	INTRON	WAC	ENSG00000095787.24	ENST00000680735.1:ENST00000375664.8:ENST00000428935.6:ENST00000651598.1:ENST00000628285.3:ENST00000681112.1:ENST00000679570.1:ENST00000375646.5:ENST00000354911.9:ENST00000347934.8:ENST00000420266.6:ENST00000651885.1:ENST00000651441.1:ENST00000679398.1:ENST00000424454.5:ENST00000442148.6:ENST00000448193.5:ENST00000414108.6:ENST00000679428.1:ENST00000439676.5:ENST00000345541.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	90	2	1.75729	1.948655	2.14002	0.0304107	0.0131247	0.130461	0.0999321
chr12	68638139	68638239	5161479	0	+	0.29	(0.28,0.32]	chr12	488585	129	INTRON	INTRON	RAP1B	ENSG00000127314.18	ENST00000460800.5:ENST00000393436.9:ENST00000250559.14:ENST00000425247.6:ENST00000501412.2:ENST00000450214.6:ENST00000463493.5:ENST00000537460.5:ENST00000341355.9:ENST00000538283.5:ENST00000541167.5:ENST00000422358.6:ENST00000489473.6:ENST00000545270.5:ENST00000538980.5:ENST00000543393.5:ENST00000542018.5:ENST00000540209.5:ENST00000378985.7:ENST00000453560.6:ENST00000534899.5:ENST00000542145.5:ENST00000539091.5:ENST00000535492.5:ENST00000540781.5:ENST00000485252.6:ENST00000538877.5:ENST00000541386.5:ENST00000543697.5:ENST00000545720.6:ENST00000541216.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	76	2	1.64432	1.94865	2.25298	0.0606133	0.00791652	0.171142	0.0797304
chr19	40456114	40456212	7184484	0	-	0.408163	(0.378,0.408]	chr19	726746	43	INTRON	INTRON	BLVRB	ENSG00000090013.11	ENST00000643519.1:ENST00000263368.9:ENST00000595483.5:ENST00000643596.1:ENST00000601346.5:ENST00000597870.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	98	2	1.8004	1.9486400000000001	2.09688	0.0096453	0.00805155	0.0870523	0.0766625
chr1	204536617	204536717	297624	0	+	0.32	(0.28,0.32]	chr1	34290	3	SS3_PROX	SS3_PROX:INTRON	MDM4	ENSG00000198625.14	ENST00000367183.7:ENST00000391947.6:ENST00000454264.6:ENST00000612738.4:ENST00000614459.4:ENST00000616250.4:ENST00000367182.8:ENST00000463049.5:ENST00000470908.5:ENST00000471783.1:ENST00000367180.5:ENST00000507825.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	97	2	1.66498	1.948605	2.23223	0.0244852	0.0109124	0.131869	0.0873034
chr3	9651029	9651128	1359781	0	+	0.515152	(0.476,0.515]	chr3	142842	1	INTRON	INTRON	MTMR14	ENSG00000163719.20	ENST00000353332.9:ENST00000420925.5:ENST00000447144.5:ENST00000296003.9:ENST00000430020.5:ENST00000351233.9:ENST00000416864.5:ENST00000437997.1:ENST00000480578.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	77	2	1.82595	1.9485549999999998	2.07116	0.0202339	0.00731321	0.109955	0.076234
chr20	41033747	41033847	7273555	0	+	0.34	(0.32,0.35]	chr20	739216	39	INTRON	INTRON	TOP1	ENSG00000198900.7	ENST00000361337.3:ENST00000681113.1:ENST00000681058.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	67	2	1.32435	1.94849	2.57263	0.0459022	0.0312297	0.164984	0.13151
chr6	135211202	135211302	2962473	0	+	0.49	(0.476,0.515]	chr6	278661	74	INTRON	INTRON	MYB	ENSG00000118513.20	ENST00000341911.10:ENST00000442647.7:ENST00000316528.12:ENST00000616088.4:ENST00000339290.9:ENST00000367812.6:ENST00000463282.6:ENST00000525477.5:ENST00000533837.5:ENST00000367814.8:ENST00000525369.5:ENST00000438901.6:ENST00000525514.5:ENST00000526320.5:ENST00000526889.5:ENST00000529586.5:ENST00000531519.5:ENST00000533808.5:ENST00000528343.5:ENST00000524588.5:ENST00000525002.5:ENST00000525940.5:ENST00000526187.5:ENST00000526565.5:ENST00000528015.5:ENST00000528140.5:ENST00000528345.5:ENST00000528774.5:ENST00000529262.5:ENST00000531634.5:ENST00000531737.5:ENST00000533384.5:ENST00000533624.5:ENST00000534044.5:ENST00000534121.5:ENST00000531845.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	62	2	1.61586	1.94849	2.28112	0.0567093	0.00700958	0.185107	0.0718189
chr14	102598423	102598523	5822591	0	+	0.43	(0.408,0.44]	chr14	552490	47	INTRON	INTRON	RCOR1	ENSG00000089902.10	ENST00000262241.7	protein_coding	protein_coding	protein_coding	protein_coding	20	188	2	1.93945	1.94848	1.95751	0.00301694	0.00129824	0.0493883	0.0333764
chr19	34394660	34394755	7052795	0	+	0.431579	(0.408,0.44]	chr19	703414	2	INTRON	INTRON	GPI	ENSG00000105220.17	ENST00000415930.8:ENST00000588991.7:ENST00000356487.11:ENST00000647446.1:ENST00000586425.2:ENST00000643067.1:ENST00000589985.5:ENST00000586392.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	83	2	1.35833	1.94847	2.53861	0.0512983	0.00202413	0.158153	0.0416117
chr2	58181048	58181148	1126134	0	-	0.37	(0.35,0.378]	chr2	120899	83	INTRON	INTRON	FANCL	ENSG00000115392.13	ENST00000696400.1:ENST00000403295.8:ENST00000696492.1:ENST00000427708.7:ENST00000696314.1:ENST00000696315.1:ENST00000696454.1:ENST00000696508.1:ENST00000696548.1:ENST00000696542.1:ENST00000696432.1:ENST00000696319.1:ENST00000403676.6:ENST00000696433.1:ENST00000696434.1:ENST00000696499.1:ENST00000696564.1:ENST00000402135.8:ENST00000696546.1:ENST00000233741.9:ENST00000696316.1:ENST00000696378.1:ENST00000696435.1:ENST00000696493.1:ENST00000696543.1:ENST00000696544.1:ENST00000696545.1:ENST00000696565.1:ENST00000696620.1:ENST00000696621.1:ENST00000696635.1:ENST00000696364.1:ENST00000696634.1:ENST00000696619.1:ENST00000696317.1:ENST00000696622.1:ENST00000696467.1:ENST00000696547.1:ENST00000449070.6:ENST00000696305.1:ENST00000417361.2:ENST00000696338.1:ENST00000696361.1:ENST00000696318.1:ENST00000696371.1:ENST00000696409.1:ENST00000696410.1:ENST00000696455.1:ENST00000696468.1:ENST00000696527.1:ENST00000696567.1:ENST00000696324.1:ENST00000696566.1:ENST00000696623.1:ENST00000446381.6:ENST00000696469.1:ENST00000696624.1:ENST00000696411.1:ENST00000696475.1:ENST00000470506.2:ENST00000696358.1:ENST00000696373.1:ENST00000696394.1:ENST00000696320.1:ENST00000696339.1:ENST00000696395.1:ENST00000696341.1:ENST00000696340.1:ENST00000696374.1:ENST00000696396.1:ENST00000696412.1:ENST00000696342.1:ENST00000696325.1:ENST00000696399.1:ENST00000696398.1:ENST00000696306.1:ENST00000696397.1:ENST00000696360.1:ENST00000696344.1:ENST00000696343.1:ENST00000696637.1:ENST00000696362.1:ENST00000696528.1:ENST00000696497.1:ENST00000696326.1:ENST00000696638.1:ENST00000696625.1:ENST00000696510.1:ENST00000696438.1:ENST00000696496.1:ENST00000696509.1:ENST00000696569.1:ENST00000696457.1:ENST00000696458.1:ENST00000696473.1:ENST00000696495.1:ENST00000696415.1:ENST00000696472.1:ENST00000696494.1:ENST00000696363.1:ENST00000696414.1:ENST00000696529.1:ENST00000696471.1:ENST00000696459.1:ENST00000696498.1:ENST00000696532.1:ENST00000696416.1:ENST00000696530.1:ENST00000696460.1:ENST00000696570.1:ENST00000696531.1:ENST00000696307.1:ENST00000696401.1:ENST00000696345.1:ENST00000696377.1:ENST00000696417.1:ENST00000696594.1:ENST00000696595.1:ENST00000696379.1:ENST00000696346.1:ENST00000696380.1:ENST00000696347.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	75	2	1.78162	1.9484650000000001	2.11531	0.0251606	0.0119629	0.12011	0.0962115
chr6	156986143	156986243	3009254	0	+	0.45	(0.44,0.476]	chr6	281130	6	INTRON	INTRON	ARID1B	ENSG00000049618.24	ENST00000346085.10:ENST00000636930.2:ENST00000647938.1:ENST00000350026.10:ENST00000674298.1:ENST00000674190.1:ENST00000414678.7:ENST00000319584.11:ENST00000452544.2:ENST00000637887.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	68	2	1.75023	1.948445	2.14666	0.0240995	0.0116436	0.129929	0.0889659
chr2	26055376	26055476	713312	0	+	0.45	(0.44,0.476]	chr2	82440	127	INTRON	INTRON	RAB10	ENSG00000084733.11	ENST00000264710.5:ENST00000495146.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	41	2	1.93084	1.94843	1.96602	0.0443175	0.0426807	0.162302	0.148082
chr1	34989524	34989623	419975	0	-	0.262626	[0,0.28]	chr1	50548	7	EXON_LNCRNA	EXON_LNCRNA:INTRON	ENSG00000271741:ZMYM6	ENSG00000271741.1:ENSG00000163867.17	ENST00000487874.1:ENST00000357182.9:ENST00000493328.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	13	178	2	1.8592	1.948285	2.03737	0.0250628	0.002337	0.12011	0.0442989
chr12	57491144	57491242	5147098	0	+	0.479592	(0.476,0.515]	chr12	486675	1	INTRON	INTRON	MARS1	ENSG00000166986.15	ENST00000537638.6:ENST00000548674.5:ENST00000545888.6:ENST00000262027.10:ENST00000628866.2:ENST00000447721.6:ENST00000549074.5:ENST00000551892.1:ENST00000552371.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	76	2	1.88582	1.9482599999999999	2.0107	0.0273268	0.00572098	0.123904	0.0681402
chrX	24758657	24758756	7632363	0	+	0.40404	(0.378,0.408]	chrX	781725	93	INTRON	INTRON	POLA1	ENSG00000101868.13	ENST00000672178.1:ENST00000379068.8:ENST00000379059.7:ENST00000611764.2:ENST00000480125.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	100	2	1.84742	1.948255	2.04909	0.013385	0.0048937	0.0946278	0.0641889
chr19	28458759	28458858	7165676	0	-	0.414141	(0.408,0.44]	chr19	724169	13	INTRON	INTRON	ENSG00000283403:ENSG00000267243	ENSG00000283403.1:ENSG00000267243.6	ENST00000592347.5:ENST00000593065.5:ENST00000592716.1:ENST00000591920.5	lncRNA	lncRNA	lncRNA	lncRNA	8	78	2	1.81017	1.9481899999999999	2.08621	0.0217525	0.00683843	0.11491	0.0748032
chr1	236564497	236564579	665333	0	-	0.378049	(0.378,0.408]	chr1	78815	1	CDS	CDS:EXON_MRNA	HEATR1	ENSG00000119285.11	ENST00000366582.8:ENST00000366581.6	protein_coding	protein_coding	protein_coding	protein_coding	5	51	2	1.8374	1.948185	2.05897	0.0339294	0.0299228	0.142135	0.134508
chr2	38306790	38306890	1098624	0	-	0.38	(0.378,0.408]	chr2	117813	61	INTRON	INTRON	ATL2	ENSG00000119787.14	ENST00000378954.9:ENST00000406122.5:ENST00000405384.6:ENST00000402054.5:ENST00000419554.6:ENST00000651368.1:ENST00000452935.6:ENST00000629272.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	51	2	1.8374	1.948185	2.05897	0.0339294	0.0299228	0.142135	0.134508
chr19	55111276	55111375	7212627	0	-	0.353535	(0.35,0.378]	chr19	732371	74	INTRON	INTRON	PPP1R12C	ENSG00000125503.13	ENST00000263433.8:ENST00000435544.6:ENST00000592993.1	protein_coding	protein_coding	protein_coding	protein_coding	6	62	2	1.44934	1.948175	2.44701	0.0658369	0.00900997	0.181518	0.0851009
chr17	66531843	66531943	6664591	0	+	0.46	(0.44,0.476]	chr17	650332	352	INTRON	INTRON	PRKCA	ENSG00000154229.12	ENST00000413366.8:ENST00000578063.5:ENST00000284384.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	58	2	1.68545	1.9481199999999999	2.21079	0.0322071	0.0194581	0.132543	0.119831
chr6	135205241	135205340	2962413	0	+	0.313131	(0.28,0.32]	chr6	278661	14	INTRON	INTRON	MYB	ENSG00000118513.20	ENST00000341911.10:ENST00000442647.7:ENST00000316528.12:ENST00000616088.4:ENST00000339290.9:ENST00000367812.6:ENST00000463282.6:ENST00000525477.5:ENST00000533837.5:ENST00000367814.8:ENST00000525369.5:ENST00000438901.6:ENST00000525514.5:ENST00000526320.5:ENST00000526889.5:ENST00000529586.5:ENST00000531519.5:ENST00000533808.5:ENST00000528343.5:ENST00000524588.5:ENST00000525002.5:ENST00000525940.5:ENST00000526187.5:ENST00000526565.5:ENST00000528015.5:ENST00000528140.5:ENST00000528345.5:ENST00000528774.5:ENST00000529262.5:ENST00000531634.5:ENST00000531737.5:ENST00000533384.5:ENST00000533624.5:ENST00000534044.5:ENST00000534121.5:ENST00000531845.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	12	146	2	1.75631	1.948075	2.13984	0.0101849	0.00564909	0.089002	0.0653997
chr12	120199858	120199951	5433302	0	-	0.322581	(0.32,0.35]	chr12	519365	5	EXON_MRNA	EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPLP0	ENSG00000089157.16	ENST00000392514.9:ENST00000551150.5:ENST00000546989.5:ENST00000313104.9:ENST00000228306.8:ENST00000552461.5:ENST00000549098.5:ENST00000551258.5:ENST00000546990.5:ENST00000547211.5:ENST00000547475.5:ENST00000547173.5:ENST00000550856.5:ENST00000548568.5:ENST00000546564.5:ENST00000547191.5:ENST00000550296.5:ENST00000552902.5:ENST00000548495.5:ENST00000550423.5:ENST00000551914.1:ENST00000548551.5:ENST00000549242.1:ENST00000551783.1:ENST00000551336.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	57	2	1.67688	1.948025	2.21917	0.0641245	0.0361676	0.199279	0.138959
chr1	39846881	39846962	427892	0	-	0.419753	(0.408,0.44]	chr1	51977	3	SS5_PROX	SS5_PROX:INTRON	TRIT1	ENSG00000043514.17	ENST00000316891.10:ENST00000648678.1:ENST00000537440.5:ENST00000372818.5:ENST00000462797.5:ENST00000441669.6:ENST00000495175.6:ENST00000491865.5:ENST00000541099.5:ENST00000465417.5:ENST00000492612.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	60	2	1.58763	1.9480050000000002	2.30838	0.0639217	0.00547703	0.177824	0.0671198
chr7	5689778	5689878	3474033	0	-	0.49	(0.476,0.515]	chr7	324821	369	INTRON	INTRON	RNF216	ENSG00000011275.19	ENST00000425013.6:ENST00000389902.8:ENST00000389900.8:ENST00000484458.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	52	2	1.8388	1.94797	2.05714	0.0564473	0.0156961	0.184423	0.101453
chr5	141533934	141534034	2739305	0	-	0.53	(0.515,0.57]	chr5	258059	2	SS5_PROX	SS5_PROX:INTRON	DIAPH1	ENSG00000131504.18	ENST00000647433.1:ENST00000389054.8:ENST00000518047.5:ENST00000491754.5:ENST00000494967.5:ENST00000518484.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	35	2	1.7074	1.94795	2.1885	0.0779432	0.0202537	0.196685	0.121364
chr6	43576354	43576440	2871476	0	+	0.534884	(0.515,0.57]	chr6	272249	3	UTR5	UTR5:EXON_MRNA	POLH	ENSG00000170734.12	ENST00000372236.9:ENST00000372226.1:ENST00000443535.1	protein_coding	protein_coding	protein_coding	protein_coding	4	35	2	1.7074	1.94795	2.1885	0.0779432	0.0202537	0.196685	0.121364
chr15	67066860	67066952	6051856	0	+	0.434783	(0.408,0.44]	chr15	576252	1	INTRON	INTRON	SMAD3	ENSG00000166949.17	ENST00000559460.5:ENST00000327367.9	protein_coding	protein_coding	protein_coding	protein_coding	7	70	2	1.91269	1.947895	1.9831	0.018491	0.0153219	0.116694	0.100173
chr5	6714951	6715035	2315850	0	+	0.52381	(0.515,0.57]	chr5	224264	4	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	TENT4A	ENSG00000112941.14	ENST00000230859.8:ENST00000515721.1:ENST00000631941.2	protein_coding	protein_coding	protein_coding	protein_coding	9	74	2	1.86208	1.94788	2.03368	0.0107937	0.00803127	0.0869599	0.0803474
chr2	108817304	108817404	848427	0	+	0.55	(0.515,0.57]	chr2	94992	8	INTRON	INTRON	CCDC138	ENSG00000163006.12	ENST00000412964.6:ENST00000409529.6:ENST00000295124.9:ENST00000456512.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	35	2	1.9459	1.9476749999999998	1.94945	0.0429089	0.0414068	0.161557	0.148082
chr19	40245311	40245411	7183337	0	-	0.41	(0.408,0.44]	chr19	726485	5	INTRON	INTRON	AKT2	ENSG00000105221.18	ENST00000392038.7:ENST00000424901.5:ENST00000391844.8:ENST00000584288.5:ENST00000311278.10:ENST00000579047.5:ENST00000578615.6:ENST00000601166.5:ENST00000492463.6:ENST00000537834.5:ENST00000491778.6:ENST00000487537.3:ENST00000441941.6:ENST00000672879.1:ENST00000486368.6:ENST00000596634.5:ENST00000452077.5:ENST00000392037.5:ENST00000416362.5:ENST00000578123.5:ENST00000672890.1:ENST00000423127.5:ENST00000358335.9:ENST00000456441.5:ENST00000583859.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	41	2	1.74775	1.947535	2.14732	0.0735403	0.0237354	0.190238	0.129075
chr11	65442045	65442144	4805963	0	+	0.444444	(0.44,0.476]	chr11	446554	194	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	174	1596	2	1.80631	1.947515	2.08872	4.9571e-4	2.80475e-5	0.0206925	0.00419015
chr13	46182010	46182110	5586797	0	-	0.44	(0.408,0.44]	chr13	533979	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	LCP1	ENSG00000136167.15	ENST00000398576.6:ENST00000323076.7:ENST00000442275.1:ENST00000460190.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	41	2	1.81572	1.9474550000000002	2.07919	0.0626779	0.0291499	0.175915	0.14147
chr20	47267023	47267123	7348604	0	-	0.42	(0.408,0.44]	chr20	749288	42	INTRON	INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000467200.6:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000468376.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	41	2	1.81572	1.9474550000000002	2.07919	0.0626779	0.0291499	0.175915	0.14147
chr6	37331671	37331771	2856062	0	+	0.43	(0.408,0.44]	chr6	270012	6	UTR3	UTR3:EXON_MRNA	TBC1D22B	ENSG00000065491.8	ENST00000373491.3	protein_coding	protein_coding	protein_coding	protein_coding	4	41	2	1.81572	1.9474550000000002	2.07919	0.0626779	0.0291499	0.175915	0.14147
chr7	107099576	107099676	3377717	0	+	0.44	(0.408,0.44]	chr7	316252	73	INTRON	INTRON	PRKAR2B	ENSG00000005249.13	ENST00000265717.5:ENST00000393613.6:ENST00000488792.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	41	2	1.81572	1.9474550000000002	2.07919	0.0626779	0.0291499	0.175915	0.14147
chr8	123360658	123360753	4042269	0	-	0.410526	(0.408,0.44]	chr8	368743	6	INTRON	INTRON	ATAD2	ENSG00000156802.13	ENST00000287394.10:ENST00000517666.5:ENST00000521903.5:ENST00000519124.5:ENST00000521496.5:ENST00000534257.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	41	2	1.81572	1.9474550000000002	2.07919	0.0626779	0.0291499	0.175915	0.14147
chr1	50934677	50934777	452000	0	-	0.35	(0.32,0.35]	chr1	54267	763	INTRON	INTRON	FAF1	ENSG00000185104.21	ENST00000396153.7:ENST00000487898.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	48	2	1.94202	1.947365	1.95271	0.0486128	0.0431213	0.162255	0.153946
chr12	873728	873827	5057403	0	+	0.323232	(0.32,0.35]	chr12	477488	20	INTRON	INTRON	WNK1	ENSG00000060237.19	ENST00000315939.11:ENST00000340908.9:ENST00000535572.5:ENST00000537687.5:ENST00000530271.6:ENST00000675631.1:ENST00000676347.1:ENST00000545285.5:ENST00000535698.1:ENST00000674810.1:ENST00000574679.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	48	2	1.94202	1.947365	1.95271	0.0486128	0.0431213	0.162255	0.153946
chr1	100289102	100289202	172505	0	+	0.47	(0.44,0.476]	chr1	18774	15	INTRON	INTRON	RTCA	ENSG00000137996.13	ENST00000370128.9:ENST00000260563.4	protein_coding	protein_coding	protein_coding	protein_coding	14	128	2	1.8855	1.94736	2.00922	0.0068301	0.00287036	0.0713163	0.0494641
chr2	43887114	43887213	1109459	0	-	0.383838	(0.378,0.408]	chr2	118920	10	UTR3	UTR3:EXON_MRNA	LRPPRC	ENSG00000138095.20	ENST00000260665.12:ENST00000682612.1:ENST00000684454.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	62	2	1.94559	1.947325	1.94906	0.023282	0.0211434	0.122929	0.118176
chr7	155306461	155306559	3451852	0	+	0.44898	(0.44,0.476]	chr7	322633	22	INTRON	INTRON	INSIG1	ENSG00000186480.13	ENST00000344756.8:ENST00000340368.9:ENST00000342407.5:ENST00000476756.1	protein_coding	protein_coding	protein_coding	protein_coding	9	82	2	1.57262	1.9472299999999998	2.32184	0.0230575	0.00609071	0.126603	0.0676501
chr5	159183049	159183149	2758921	0	-	0.24	[0,0.28]	chr5	260356	6	INTRON	INTRON	RNF145	ENSG00000145860.12	ENST00000424310.7:ENST00000519865.5:ENST00000274542.6:ENST00000611185.4:ENST00000521606.6:ENST00000518802.5:ENST00000520638.1:ENST00000520548.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	155	2	1.83898	1.947225	2.05547	0.0218514	0.00563365	0.11491	0.0678837
chr12	116142606	116142706	5424195	0	-	0.54	(0.515,0.57]	chr12	518263	307	INTRON	INTRON	MED13L	ENSG00000123066.9	ENST00000281928.9:ENST00000650226.1:ENST00000548743.2:ENST00000647567.1:ENST00000551197.2	protein_coding	protein_coding	protein_coding	protein_coding	16	112	2	1.37404	1.94722	2.5204	0.017382	9.8022e-4	0.112474	0.0285591
chr6	167845392	167845492	3034522	0	+	0.47	(0.44,0.476]	chr6	282711	171	INTRON	INTRON	AFDN	ENSG00000130396.21	ENST00000683244.1:ENST00000400825.8:ENST00000351017.9:ENST00000344191.8:ENST00000392112.5:ENST00000392108.7:ENST00000400824.8:ENST00000400822.7:ENST00000447894.6:ENST00000366809.6:ENST00000366806.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	49	2	1.92837	1.947195	1.96602	0.0426807	0.0222222	0.148082	0.124303
chr16	21431204	21431304	6460626	0	-	0.62	(0.57,1]	chr16	623219	3	SS5_PROX	SS5_PROX:INTRON	NPIPB3	ENSG00000169246.16	ENST00000521589.5:ENST00000534903.1:ENST00000545358.5:ENST00000543368.1:ENST00000544154.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	30	2	1.72406	1.9471599999999998	2.17026	0.0261443	0.0220522	0.123836	0.122221
chr16	22315408	22315508	6321722	0	+	0.61	(0.57,1]	chr16	605239	2	SS5_PROX	SS5_PROX:INTRON	POLR3E	ENSG00000058600.16	ENST00000615879.4:ENST00000299853.10:ENST00000564209.5:ENST00000418581.6:ENST00000359210.8:ENST00000564061.5:ENST00000564750.5:ENST00000565551.5:ENST00000569757.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	30	2	1.72406	1.9471599999999998	2.17026	0.0261443	0.0220522	0.123836	0.122221
chr5	139309481	139309574	2499540	0	+	0.301075	(0.28,0.32]	chr5	238921	8	INTRON	INTRON	MATR3	ENSG00000280987.4:ENSG00000015479.20	ENST00000509990.5:ENST00000506147.5:ENST00000512107.5:ENST00000361059.7:ENST00000394800.6:ENST00000502929.5:ENST00000504203.5:ENST00000509644.5:ENST00000512876.5:ENST00000513678.5:ENST00000513121.1:ENST00000504045.5:ENST00000504311.5:ENST00000502499.5:ENST00000510056.5:ENST00000511249.5:ENST00000394805.8:ENST00000507860.1:ENST00000509918.5:ENST00000503811.5:ENST00000511978.5:ENST00000618441.5:ENST00000514528.5:ENST00000504643.5:ENST00000515833.2:ENST00000514402.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	10	105	2	1.63482	1.9471049999999999	2.25939	0.021772	0.0133667	0.11491	0.100827
chr7	76603798	76603898	3340906	0	+	0.49	(0.476,0.515]	chr7	311170	519	INTRON	INTRON	ENSG00000205485	ENSG00000205485.13	ENST00000418663.5:ENST00000450661.1:ENST00000423084.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	20	179	2	1.50714	1.9470899999999998	2.38704	0.00944955	5.22808e-4	0.0862013	0.0210671
chr19	18908986	18909084	7153263	0	-	0.5	(0.476,0.515]	chr19	722984	15	INTRON	INTRON	COPE	ENSG00000105669.14	ENST00000262812.9:ENST00000349893.8:ENST00000600932.5:ENST00000598969.5:ENST00000351079.8:ENST00000593827.1:ENST00000597026.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	83	2	1.23296	1.9470399999999999	2.66112	0.0446281	0.0044598	0.163255	0.0592169
chr7	64535711	64535811	3537045	0	-	0.47	(0.44,0.476]	chr7	329904	88	INTRON	INTRON	ZNF680	ENSG00000173041.12	ENST00000309683.11:ENST00000476563.1:ENST00000470847.1:ENST00000447137.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	49	2	1.75627	1.9470299999999998	2.13779	0.0380723	0.0264596	0.157702	0.122506
chr6	31746423	31746516	2843551	0	+	0.419355	(0.408,0.44]	chr6	267796	2	INTRON	INTRON	MSH5:MSH5-SAPCD1	ENSG00000204410.16:ENSG00000255152.8	ENST00000375755.8:ENST00000375750.9:ENST00000650702.1:ENST00000493662.6:ENST00000375703.7:ENST00000375740.7:ENST00000423982.6:ENST00000463144.5:ENST00000450148.5:ENST00000497269.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	68	2	1.92871	1.947025	1.96534	0.0216499	0.0127189	0.11491	0.0986242
chr11	2972379	2972479	4891792	0	-	0.31	(0.28,0.32]	chr11	458332	1	SS3_PROX	SS3_PROX:INTRON	NAP1L4	ENSG00000205531.13	ENST00000620138.4:ENST00000380542.9:ENST00000526115.5:ENST00000532325.6:ENST00000448187.5:ENST00000399614.6:ENST00000430811.5:ENST00000529361.5:ENST00000528968.5:ENST00000530064.5:ENST00000526842.5:ENST00000531291.5:ENST00000455338.6:ENST00000534372.1	protein_coding	protein_coding	protein_coding	protein_coding	7	87	2	1.47775	1.9469999999999998	2.41625	0.0653002	0.00419958	0.180158	0.0592209
chr5	54084763	54084863	2618654	0	-	0.44	(0.408,0.44]	chr5	248841	88	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	83	2	1.39095	1.946825	2.5027	0.046481	0.00238178	0.151299	0.0449397
chr6	147735659	147735756	2991354	0	+	0.360825	(0.35,0.378]	chr6	280173	15	INTRON	INTRON	ENSG00000227681	ENSG00000227681.5	ENST00000427015.1:ENST00000432506.5:ENST00000442094.5:ENST00000434985.1	lncRNA	lncRNA	lncRNA	lncRNA	6	65	2	1.91706	1.94676	1.97646	0.026412	0.0193942	0.122506	0.119831
chr15	27155278	27155378	5983996	0	+	0.24	[0,0.28]	chr15	569164	1281	INTRON	INTRON	GABRG3	ENSG00000182256.13	ENST00000615808.5:ENST00000555083.5	protein_coding	protein_coding	protein_coding	protein_coding	5	72	2	1.89998	1.946715	1.99345	0.0599553	0.0211881	0.169548	0.123133
chr10	119058880	119058957	4704693	0	-	0.298701	(0.28,0.32]	chr10	433963	2	SS5_PROX	SS5_PROX:INTRON	EIF3A	ENSG00000107581.13	ENST00000369144.8:ENST00000541549.2:ENST00000462527.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	63	2	1.60343	1.946705	2.28998	0.0669889	0.0166401	0.183051	0.110511
chr16	58183361	58183460	6495042	0	-	0.363636	(0.35,0.378]	chr16	628344	85	INTRON	INTRON	CSNK2A2	ENSG00000070770.10	ENST00000262506.8:ENST00000565188.2:ENST00000566813.5:ENST00000677823.1:ENST00000567730.6:ENST00000563307.2:ENST00000562367.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	45	2	1.90405	1.9466700000000001	1.98929	0.0482651	0.0417909	0.171852	0.147075
chr2	73429241	73429340	808969	0	+	0.353535	(0.35,0.378]	chr2	90545	23	INTRON	INTRON	ALMS1	ENSG00000116127.20	ENST00000484298.5:ENST00000613296.6:ENST00000614410.4:ENST00000682889.1:ENST00000682801.1:ENST00000682859.1:ENST00000682565.1:ENST00000684548.1:ENST00000683791.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	45	2	1.90405	1.9466700000000001	1.98929	0.0482651	0.0417909	0.171852	0.147075
chr1	179073421	179073520	266155	0	+	0.50505	(0.476,0.515]	chr1	31059	14	UTR3	UTR3:EXON_MRNA	FAM20B	ENSG00000116199.12	ENST00000263733.5	protein_coding	protein_coding	protein_coding	protein_coding	11	99	2	1.59973	1.94666	2.29359	0.0150784	0.00584957	0.0994339	0.0689807
chr18	9176193	9176292	6869325	0	+	0.252525	[0,0.28]	chr18	680561	380	INTRON	INTRON	ANKRD12	ENSG00000101745.17	ENST00000585234.5:ENST00000262126.9:ENST00000577992.1:ENST00000540578.6:ENST00000581635.5:ENST00000400020.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	10	121	2	1.65268	1.946605	2.24053	0.0256186	0.0141631	0.120376	0.103627
chr5	28859434	28859534	2330344	0	+	0.37	(0.35,0.378]	chr5	225135	489	INTRON	INTRON	LINC02109	ENSG00000259786.7	ENST00000658190.1	lncRNA	lncRNA	lncRNA	lncRNA	9	90	2	1.56836	1.9465400000000002	2.32472	0.0240966	0.0066582	0.129929	0.0703994
chr3	5154832	5154932	1353901	0	+	0.41	(0.408,0.44]	chr3	142361	259	INTRON	INTRON	ARL8B	ENSG00000134108.14	ENST00000429403.5:ENST00000256496.8:ENST00000455168.5:ENST00000444332.1:ENST00000419534.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	99	2	1.43388	1.94652	2.45916	0.0509486	6.48651e-4	0.157123	0.0230814
chr7	87895478	87895577	3346870	0	+	0.444444	(0.44,0.476]	chr7	311868	71	INTRON	INTRON	DBF4	ENSG00000006634.8	ENST00000413643.5:ENST00000265728.6:ENST00000431138.5:ENST00000430279.5:ENST00000498144.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	56	2	1.60176	1.94651	2.29126	0.0389597	0.0165638	0.160861	0.102621
chr6	15316125	15316225	2823648	0	+	0.53	(0.515,0.57]	chr6	265192	12	INTRON	INTRON	JARID2	ENSG00000008083.14	ENST00000341776.7:ENST00000397311.4	protein_coding	protein_coding	protein_coding	protein_coding	9	71	2	1.3492	1.94646	2.54372	0.0480671	0.00205444	0.171405	0.0409693
chr21	46198759	46198859	7470562	0	-	0.32	(0.28,0.32]	chr21	761464	21	INTRON	INTRON	LSS	ENSG00000160285.15	ENST00000356396.8:ENST00000397728.8:ENST00000457828.6:ENST00000522411.5	protein_coding	protein_coding	protein_coding	protein_coding	25	272	2	1.56588	1.94641	2.32694	0.00613699	0.00134209	0.0709692	0.0336213
chr12	53457586	53457685	5142944	0	+	0.414141	(0.408,0.44]	chr12	485394	12	INTRON	INTRON	PCBP2	ENSG00000197111.16	ENST00000546463.6:ENST00000437231.5:ENST00000447282.5:ENST00000359282.9:ENST00000549863.5:ENST00000359462.9:ENST00000550520.6:ENST00000552296.6:ENST00000551104.5:ENST00000552819.5:ENST00000455667.7:ENST00000439930.7:ENST00000548933.5:ENST00000546652.6:ENST00000562264.5:ENST00000548190.1:ENST00000550585.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	68	2	1.8865	1.9463949999999999	2.00629	0.0189661	0.0148842	0.108861	0.107116
chr4	82834364	82834464	2179503	0	-	0.42	(0.408,0.44]	chr4	214267	30	INTRON	INTRON	SEC31A	ENSG00000138674.17	ENST00000395310.7:ENST00000513858.5:ENST00000348405.8:ENST00000503937.5:ENST00000448323.5:ENST00000311785.11:ENST00000509142.5:ENST00000443462.6:ENST00000500777.6:ENST00000505472.5:ENST00000355196.6:ENST00000508502.5:ENST00000264405.9:ENST00000505984.5:ENST00000511338.1:ENST00000515749.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	80	2	1.44275	1.94639	2.45003	0.0243178	0.00990006	0.13103	0.0838372
chr19	897062	897155	7110765	0	-	0.430108	(0.408,0.44]	chr19	714137	7	UTR3	UTR3:EXON_MRNA	R3HDM4	ENSG00000198858.10	ENST00000589428.5:ENST00000361574.10:ENST00000587975.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	13	121	2	1.8827	1.946215	2.00973	0.0069268	0.00370089	0.0718189	0.0561162
chr6	17642329	17642427	3065553	0	-	0.397959	(0.378,0.408]	chr6	284800	19	INTRON	INTRON	NUP153	ENSG00000124789.12	ENST00000613258.4:ENST00000537253.5:ENST00000262077.3	protein_coding	protein_coding	protein_coding	protein_coding	5	51	2	1.94559	1.9462	1.94681	0.0457723	0.0211434	0.149888	0.122929
chr7	75367646	75367745	3337745	0	+	0.545455	(0.515,0.57]	chr7	310752	1	INTRON	INTRON	STAG3L1	ENSG00000205583.14	ENST00000619870.4:ENST00000404291.3	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	11	88	2	1.73179	1.9461499999999998	2.16051	0.00976557	0.0046825	0.0834753	0.0631419
chr1	229265737	229265837	652335	0	-	0.3	(0.28,0.32]	chr1	77229	19	EXON_LNCRNA	EXON_LNCRNA:INTRON	ENSG00000177788	ENSG00000177788.7	ENST00000654028.1:ENST00000653511.1:ENST00000656366.1:ENST00000429227.1:ENST00000660017.1	lncRNA	lncRNA	lncRNA	lncRNA	5	65	2	1.86798	1.9461400000000002	2.0243	0.0364967	0.0335733	0.153759	0.134145
chr16	89406756	89406856	6542756	0	-	0.57	(0.515,0.57]	chr16	634254	26	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000647238.1:ENST00000644045.1:ENST00000643147.1:ENST00000644139.1:ENST00000568512.6:ENST00000566973.1:ENST00000562211.2:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	42	2	1.49871	1.94611	2.39351	0.0770828	0.0100431	0.196285	0.0881096
chr3	47746224	47746324	1684719	0	-	0.44	(0.408,0.44]	chr3	172113	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SMARCC1	ENSG00000173473.11	ENST00000254480.10:ENST00000425518.5:ENST00000485833.1:ENST00000454240.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	44	2	1.70409	1.9460800000000003	2.18807	0.0708044	0.028108	0.184528	0.137011
chr6	35350546	35350646	2852058	0	+	0.33	(0.32,0.35]	chr6	269491	30	INTRON	INTRON	PPARD	ENSG00000112033.14	ENST00000418635.6:ENST00000448077.6:ENST00000360694.8:ENST00000311565.4:ENST00000337400.6	protein_coding	protein_coding	protein_coding	protein_coding	8	90	2	1.81388	1.9460449999999998	2.07821	0.0371014	0.00473999	0.139201	0.0634645
chr7	157205599	157205699	3454619	0	+	0.39	(0.378,0.408]	chr7	322965	34	INTRON	INTRON	UBE3C	ENSG00000009335.18	ENST00000348165.10	protein_coding	protein_coding	protein_coding	protein_coding	11	110	2	1.42554	1.9460250000000001	2.46651	0.0425654	6.45662e-4	0.148082	0.023017
chr16	18920051	18920150	6458047	0	-	0.525253	(0.515,0.57]	chr16	622895	85	INTRON	INTRON	SMG1	ENSG00000157106.18	ENST00000446231.7:ENST00000532700.6:ENST00000569122.1	protein_coding	protein_coding	protein_coding	protein_coding	5	42	2	1.63184	1.94598	2.26012	0.0545832	0.0160033	0.165292	0.109464
chr20	47338656	47338756	7349331	0	-	0.52	(0.515,0.57]	chr20	749346	197	INTRON	INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000435836.5:ENST00000446894.5:ENST00000441977.1	protein_coding	protein_coding	protein_coding	protein_coding	5	42	2	1.63184	1.94598	2.26012	0.0545832	0.0160033	0.165292	0.109464
chr3	9806510	9806608	1361066	0	+	0.418367	(0.408,0.44]	chr3	143127	4	UTR3	UTR3:EXON_MRNA:INTRON	ARPC4-TTLL3:ARPC4	ENSG00000250151.9:ENSG00000241553.13	ENST00000424442.5:ENST00000418163.5:ENST00000397261.8:ENST00000397256.5:ENST00000433034.1:ENST00000453882.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	70	675	2	1.53208	1.945975	2.35987	0.00227508	3.65134e-5	0.0437013	0.00512605
chr6	47617116	47617215	2874980	0	+	0.454545	(0.44,0.476]	chr6	272823	42	INTRON	INTRON	CD2AP	ENSG00000198087.7	ENST00000359314.5	protein_coding	protein_coding	protein_coding	protein_coding	6	59	2	1.71574	1.94597	2.1762	0.045256	0.0092251	0.149888	0.0855292
chr4	126713975	126714075	2237850	0	-	0.38	(0.378,0.408]	chr4	219029	153	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	5	45	2	1.66594	1.94592	2.2259	0.0662381	0.0320222	0.181924	0.144995
chr1	46310616	46310716	96609	0	+	0.42	(0.408,0.44]	chr1	12976	3	SS5_PROX	SS5_PROX:INTRON	UQCRH	ENSG00000173660.12	ENST00000311672.10:ENST00000489056.5:ENST00000496387.5:ENST00000460947.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	89	2	1.46762	1.94583	2.42404	0.0267854	0.00413548	0.134871	0.0566868
chrX	24781247	24781347	7632590	0	+	0.43	(0.408,0.44]	chrX	781731	55	INTRON	INTRON	POLA1	ENSG00000101868.13	ENST00000672178.1:ENST00000379068.8:ENST00000379059.7:ENST00000611764.2:ENST00000480125.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	105	2	1.73272	1.94583	2.15894	0.0113502	0.00504142	0.0886611	0.0646039
chr5	54070432	54070532	2618510	0	-	0.61	(0.57,1]	chr5	248837	223	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	39	2	1.64729	1.9458149999999999	2.24434	0.0231375	0.00677343	0.118148	0.074225
chr15	25436158	25436258	6121814	0	-	0.33	(0.32,0.35]	chr15	582937	87	INTRON	INTRON	UBE3A	ENSG00000114062.22	ENST00000648336.2:ENST00000438097.6:ENST00000635914.1:ENST00000638155.1:ENST00000637886.1:ENST00000638011.1:ENST00000649550.1:ENST00000650110.1:ENST00000630424.2:ENST00000566215.5:ENST00000428984.6:ENST00000675177.1:ENST00000675593.1:ENST00000625778.3:ENST00000675000.1:ENST00000626793.2:ENST00000628733.2:ENST00000630907.2:ENST00000675038.1:ENST00000629886.2:ENST00000628267.2:ENST00000629252.2:ENST00000625681.2:ENST00000627018.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	74	2	1.30365	1.9455900000000002	2.58753	0.0773448	0.00560122	0.196285	0.0678837
chr1	31293124	31293218	413256	0	-	0.351064	(0.35,0.378]	chr1	49811	4	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	SNRNP40	ENSG00000060688.13	ENST00000263694.9:ENST00000463988.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	85	2	1.8773	1.94554	2.01378	0.0184031	0.00952336	0.108834	0.0863913
chr12	110724159	110724259	5411341	0	-	0.53	(0.515,0.57]	chr12	516722	1	SS5_PROX	SS5_PROX:INTRON	PPP1CC	ENSG00000186298.12	ENST00000335007.10:ENST00000340766.9:ENST00000550261.5:ENST00000551582.1:ENST00000553024.1:ENST00000546933.5:ENST00000550991.5:ENST00000551676.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	42	2	1.94493	1.9454150000000001	1.9459	0.0429089	0.0204583	0.148082	0.122204
chr12	123606459	123606559	5243199	0	+	0.53	(0.515,0.57]	chr12	498301	3	SS5_PROX	SS5_PROX:INTRON	DDX55	ENSG00000111364.16	ENST00000542286.5:ENST00000544429.5:ENST00000238146.9:ENST00000545042.1:ENST00000544738.5:ENST00000538744.5:ENST00000540763.5:ENST00000354291.8:ENST00000536079.5:ENST00000539934.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	42	2	1.94493	1.9454150000000001	1.9459	0.0429089	0.0204583	0.148082	0.122204
chr16	2451512	2451611	6278150	0	+	0.545455	(0.515,0.57]	chr16	600425	12	INTRON	INTRON	CCNF	ENSG00000162063.13	ENST00000293968.11:ENST00000397066.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	70	2	1.31383	1.9454000000000002	2.57697	0.0552039	0.00153959	0.165463	0.0362709
chr22	20944920	20945019	7480793	0	+	0.494949	(0.476,0.515]	chr22	763096	103	INTRON	INTRON	CRKL	ENSG00000099942.13	ENST00000354336.8:ENST00000411769.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	16	121	2	1.35649	1.94534	2.53419	0.0182462	0.00251905	0.11547	0.0446195
chr10	125062524	125062623	4713354	0	-	0.525253	(0.515,0.57]	chr10	434897	230	INTRON	INTRON	CTBP2	ENSG00000175029.17	ENST00000337195.9:ENST00000411419.6:ENST00000494626.6:ENST00000531469.5:ENST00000460976.5:ENST00000476817.1:ENST00000530884.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	65	2	1.72014	1.945265	2.17039	0.0185015	0.00900252	0.108861	0.0851009
chr10	70721026	70721126	4447811	0	+	0.49	(0.476,0.515]	chr10	410378	119	INTRON	INTRON	ADAMTS14	ENSG00000138316.11	ENST00000373207.2:ENST00000373208.5	protein_coding	protein_coding	protein_coding	protein_coding	4	41	2	1.8388	1.94517	2.05154	0.0564473	0.0336015	0.184423	0.134145
chr17	39271356	39271453	6765341	0	-	0.536082	(0.515,0.57]	chr17	665443	1	INTRON	INTRON	FBXL20	ENSG00000108306.13	ENST00000264658.11:ENST00000583610.5:ENST00000394294.7:ENST00000577399.5	protein_coding	protein_coding	protein_coding	protein_coding	5	42	2	1.67758	1.9451550000000002	2.21273	0.0471728	0.0196151	0.168737	0.109486
chr3	25651856	25651955	1642039	0	-	0.282828	(0.28,0.32]	chr3	168598	60	INTRON	INTRON	TOP2B	ENSG00000077097.16	ENST00000264331.9:ENST00000435706.6:ENST00000424225.1	protein_coding	protein_coding	protein_coding	protein_coding	6	76	2	1.9021	1.94508	1.98806	0.0304779	0.0199553	0.130699	0.120668
chr12	69265540	69265639	5163776	0	+	0.313131	(0.28,0.32]	chr12	489050	26	INTRON	INTRON	CPSF6	ENSG00000111605.18	ENST00000435070.7:ENST00000650046.1:ENST00000456847.7:ENST00000266679.8:ENST00000551516.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	114	2	1.21977	1.94507	2.67037	0.0732687	0.00141946	0.189963	0.034662
chr2	177223164	177223264	926027	0	+	0.36	(0.35,0.378]	chr2	101764	40	UTR3	UTR3:EXON_MRNA	HNRNPA3	ENSG00000170144.21	ENST00000679159.1:ENST00000678111.1:ENST00000678421.1:ENST00000677863.1:ENST00000676681.1:ENST00000676629.1:ENST00000677337.1:ENST00000676488.1:ENST00000677043.1:ENST00000676874.1:ENST00000676762.1:ENST00000411529.6:ENST00000676736.1:ENST00000483137.2:ENST00000677508.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	20	190	2	1.39149	1.9450349999999998	2.49858	0.0151079	5.74536e-4	0.108472	0.0222022
chr5	139327863	139327961	2499740	0	+	0.44898	(0.44,0.476]	chr5	238978	12	INTRON	INTRON	MATR3	ENSG00000280987.4:ENSG00000015479.20	ENST00000509990.5:ENST00000361059.7:ENST00000394800.6:ENST00000502929.5:ENST00000504203.5:ENST00000502499.5:ENST00000510056.5:ENST00000394805.8:ENST00000503811.5:ENST00000618441.5:ENST00000505625.5:ENST00000502422.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	94	2	1.59737	1.944975	2.29258	0.0234794	0.00279559	0.118716	0.0488779
chr8	123373780	123373880	4042413	0	-	0.3	(0.28,0.32]	chr8	368782	7	INTRON	INTRON	ATAD2	ENSG00000156802.13	ENST00000287394.10:ENST00000517666.5:ENST00000521903.5:ENST00000519124.5:ENST00000521496.5:ENST00000530065.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	54	2	1.56118	1.9449450000000001	2.32871	0.0581621	0.0467152	0.167723	0.1676
chr1	28972538	28972638	59536	0	+	0.37	(0.35,0.378]	chr1	7621	574	INTRON	INTRON	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000647918.1:ENST00000646800.1:ENST00000644342.1:ENST00000646189.1:ENST00000482464.6:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000646260.1:ENST00000373798.5:ENST00000644600.1:ENST00000649674.1:ENST00000643173.1:ENST00000343067.9:ENST00000644780.1:ENST00000650265.1:ENST00000648181.1:ENST00000643604.1:ENST00000648891.1:ENST00000373797.2:ENST00000349460.9:ENST00000645184.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	66	2	1.84611	1.944845	2.04358	0.0329533	0.0204148	0.145171	0.110862
chr15	64477118	64477218	6044253	0	+	0.41	(0.408,0.44]	chr15	575688	159	INTRON	INTRON	ZNF609	ENSG00000180357.10	ENST00000326648.5:ENST00000416172.1	protein_coding	protein_coding	protein_coding	protein_coding	7	68	2	1.87977	1.94469	2.00961	0.0282738	0.00931007	0.125825	0.0855292
chr11	119129470	119129567	4874793	0	+	0.463918	(0.44,0.476]	chr11	455639	20	INTRON	INTRON	HINFP	ENSG00000172273.13	ENST00000350777.7:ENST00000529354.1:ENST00000531360.5:ENST00000529988.5:ENST00000527354.5:ENST00000527410.3:ENST00000532312.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	49	2	1.55662	1.94467	2.33272	0.0688347	0.0129984	0.184298	0.0991656
chr2	44445681	44445781	766177	0	+	0.45	(0.44,0.476]	chr2	86775	447	INTRON	INTRON	CAMKMT	ENSG00000143919.15	ENST00000378494.8:ENST00000402247.5:ENST00000407131.5:ENST00000403853.7:ENST00000428993.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	49	2	1.55662	1.94467	2.33272	0.0688347	0.0129984	0.184298	0.0991656
chr14	105470472	105470557	5831184	0	+	0.494118	(0.476,0.515]	chr14	553671	4	UTR3	UTR3:EXON_MRNA	MTA1	ENSG00000182979.18	ENST00000435036.6:ENST00000331320.12:ENST00000406191.5:ENST00000405646.5:ENST00000434050.5:ENST00000552286.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	59	2	1.91525	1.944635	1.97402	0.0232571	0.0206778	0.127416	0.110999
chr17	42273206	42273305	6772197	0	-	0.282828	(0.28,0.32]	chr17	666975	6	INTRON	INTRON	STAT5B:ENSG00000278829	ENSG00000173757.10:ENSG00000278829.1	ENST00000293328.8:ENST00000468312.1:ENST00000415845.1:ENST00000617211.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	14	165	2	1.55179	1.94458	2.33737	0.0156405	0.00256382	0.109464	0.0450785
chr3	40463125	40463224	1401963	0	+	0.535354	(0.515,0.57]	chr3	147280	10	UTR3	UTR3:EXON_MRNA	RPL14	ENSG00000188846.14	ENST00000338970.10:ENST00000396203.7	protein_coding	protein_coding	protein_coding	protein_coding	8	69	2	1.62814	1.9445700000000001	2.261	0.035203	0.00333544	0.150193	0.0512081
chr9	99118585	99118685	4175569	0	+	0.3	(0.28,0.32]	chr9	380654	129	INTRON	INTRON	TGFBR1	ENSG00000106799.13	ENST00000547314.5:ENST00000552573.6:ENST00000374990.6:ENST00000374994.9:ENST00000552516.5:ENST00000549766.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	100	2	1.57779	1.94454	2.31129	0.0502605	0.00319044	0.156383	0.0520345
chr6	4023464	4023564	2789719	0	+	0.36	(0.35,0.378]	chr6	263481	16	INTRON	INTRON	PRPF4B	ENSG00000112739.17	ENST00000480058.5:ENST00000337659.11	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	66	2	1.82281	1.944465	2.06612	0.0316938	0.0164908	0.144635	0.102419
chr13	20021808	20021907	5453067	0	+	0.363636	(0.35,0.378]	chr13	522478	18	INTRON	INTRON	ZMYM2	ENSG00000121741.17	ENST00000382874.6:ENST00000610343.5:ENST00000382871.3	protein_coding	protein_coding	protein_coding	protein_coding	13	132	2	1.67836	1.94441	2.21046	0.0099105	0.00335487	0.0877296	0.0514696
chr4	126564408	126564508	2236353	0	-	0.43	(0.408,0.44]	chr4	219023	989	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	6	57	2	1.8865	1.9443899999999998	2.00228	0.0389732	0.0148842	0.143072	0.107116
chr19	10174405	10174495	7134661	0	-	0.433333	(0.408,0.44]	chr19	719214	1	INTRON	INTRON	DNMT1	ENSG00000130816.17	ENST00000340748.8:ENST00000359526.9:ENST00000592705.5:ENST00000679103.1:ENST00000677634.1:ENST00000676820.1:ENST00000677250.1:ENST00000677013.1:ENST00000677685.1:ENST00000677616.1:ENST00000676604.1:ENST00000678024.1:ENST00000676610.1:ENST00000678804.1:ENST00000679313.1:ENST00000677946.1:ENST00000586988.5:ENST00000588952.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	68	2	1.58026	1.94432	2.30838	0.0444624	0.00547703	0.149888	0.0671198
chr8	111039318	111039414	4027595	0	-	0.354167	(0.35,0.378]	chr8	367869	21	INTRON	INTRON	LINC01608	ENSG00000253877.6	ENST00000669893.1	lncRNA	lncRNA	lncRNA	lncRNA	7	74	2	1.53008	1.9442300000000001	2.35838	0.0530361	0.00468156	0.162198	0.0631419
chr12	123344360	123344459	5444998	0	-	0.373737	(0.35,0.378]	chr12	521097	29	INTRON	INTRON	SBNO1	ENSG00000139697.14	ENST00000602398.3:ENST00000267176.8:ENST00000420886.6	protein_coding	protein_coding	protein_coding	protein_coding	7	57	2	1.34988	1.94422	2.53856	0.0498069	0.0326077	0.17488	0.133687
chr1	75659569	75659669	490273	0	-	0.43	(0.408,0.44]	chr1	58159	167	INTRON	INTRON	ENSG00000230863	ENSG00000230863.3	ENST00000648424.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	4	41	2	1.88062	1.94415	2.00768	0.0534548	0.035843	0.162935	0.152216
chr20	30384989	30385088	7252823	0	+	0.434343	(0.408,0.44]	chr20	736567	50	INTRON	INTRON	FRG1BP	ENSG00000149531.15	ENST00000278882.8	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	4	41	2	1.88062	1.94415	2.00768	0.0534548	0.035843	0.162935	0.152216
chr8	37868046	37868145	3935624	0	-	0.494949	(0.476,0.515]	chr8	360553	46	INTRON	INTRON	RAB11FIP1	ENSG00000156675.16	ENST00000330843.9:ENST00000287263.8:ENST00000522727.5:ENST00000523182.5:ENST00000522774.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	21	185	2	1.47251	1.944095	2.41568	0.0100047	4.48739e-4	0.0880217	0.0196044
chr17	59673051	59673146	6642118	0	+	0.357895	(0.35,0.378]	chr17	648613	16	INTRON	INTRON	CLTC	ENSG00000141367.12	ENST00000621829.4:ENST00000393043.5:ENST00000269122.8:ENST00000579456.5:ENST00000579815.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	47	2	1.64283	1.94409	2.24535	0.0647516	0.034896	0.179192	0.148998
chr6	57109419	57109518	2878252	0	+	0.373737	(0.35,0.378]	chr6	273248	75	UTR3	UTR3:EXON_MRNA:INTRON	ZNF451	ENSG00000112200.17	ENST00000515290.5:ENST00000510483.5:ENST00000357489.7:ENST00000370708.8:ENST00000370702.5:ENST00000444273.6:ENST00000370711.9:ENST00000370706.9:ENST00000491832.6:ENST00000502749.1:ENST00000504603.1:ENST00000509071.5:ENST00000509251.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	54	2	1.81767	1.94408	2.07049	0.0640429	0.0140397	0.177882	0.102801
chr22	19108752	19108852	7551878	0	-	0.51	(0.476,0.515]	chr22	771903	189	INTRON	INTRON	DGCR2	ENSG00000070413.20	ENST00000537045.5:ENST00000545799.5:ENST00000263196.12:ENST00000389262.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	56	2	1.4553	1.94386	2.43242	0.0623645	0.0091895	0.175357	0.0855292
chr17	37616322	37616420	6764120	0	-	0.469388	(0.44,0.476]	chr17	665161	9	INTRON	INTRON	DDX52	ENSG00000278053.5	ENST00000617633.5:ENST00000616646.4:ENST00000620209.4:ENST00000614307.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	56	2	1.54868	1.943835	2.33899	0.0457575	0.0142027	0.164677	0.0959987
chr2	152760331	152760429	894677	0	+	0.204082	[0,0.28]	chr2	99141	6	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ARL6IP6	ENSG00000177917.12	ENST00000690727.1:ENST00000688293.1:ENST00000686839.1:ENST00000689155.1:ENST00000691702.1:ENST00000691523.1:ENST00000688012.1:ENST00000692399.1:ENST00000425034.6:ENST00000686080.1:ENST00000326446.10:ENST00000463690.2:ENST00000688130.1:ENST00000495469.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	87	2	1.85833	1.94381	2.02929	0.0378973	0.0189138	0.141283	0.118303
chr17	67884129	67884229	6668293	0	+	0.42	(0.408,0.44]	chr17	650566	80	INTRON	INTRON	BPTF	ENSG00000171634.19	ENST00000306378.11:ENST00000544778.6:ENST00000321892.8:ENST00000342579.8:ENST00000644067.1:ENST00000424123.7:ENST00000544491.2	protein_coding	protein_coding	protein_coding	protein_coding	7	68	2	1.53812	1.9437600000000002	2.3494	0.0501609	0.00462504	0.156383	0.062717
chr18	9108767	9108867	6868654	0	+	0.56	(0.515,0.57]	chr18	680510	34	INTRON	INTRON	NDUFV2	ENSG00000178127.13	ENST00000577703.1:ENST00000318388.11:ENST00000583375.5:ENST00000400033.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	59	2	1.6151	1.94374	2.27238	0.0189412	0.0161808	0.118428	0.101453
chr18	73254396	73254495	6988519	0	-	0.282828	(0.28,0.32]	chr18	691712	14	INTRON	INTRON	LINC02864	ENSG00000263711.6	ENST00000584544.5:ENST00000581011.5:ENST00000581862.6:ENST00000669547.1:ENST00000661525.1:ENST00000583405.5:ENST00000582571.2:ENST00000667943.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	18	210	2	1.93893	1.94373	1.94853	0.00878302	0.00168406	0.0790073	0.0381778
chr6	31836194	31836294	2843846	0	+	0.42	(0.408,0.44]	chr6	267910	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	SNHG32	ENSG00000204387.14	ENST00000375640.7:ENST00000375641.6:ENST00000375635.6:ENST00000375638.7:ENST00000648677.1:ENST00000375642.6:ENST00000614363.4:ENST00000395789.5:ENST00000375633.5	lncRNA	lncRNA	lncRNA	lncRNA	73	697	2	1.90814	1.9436849999999999	1.97923	2.94053e-4	0.00027884300000000003	0.0159179	0.0148832
chr1	1879666	1879766	362727	0	-	0.36	(0.35,0.378]	chr1	42311	396	INTRON	INTRON	GNB1	ENSG00000078369.18	ENST00000610897.4:ENST00000615252.4:ENST00000378609.9:ENST00000439272.6:ENST00000434686.6:ENST00000472614.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	54	2	1.65083	1.94367	2.23651	0.0521072	0.020879	0.177022	0.111766
chr3	172759369	172759469	1563301	0	+	0.26	[0,0.28]	chr3	161738	3	SS5_PROX	SS5_PROX:INTRON	ECT2	ENSG00000114346.14	ENST00000232458.9:ENST00000540509.5:ENST00000392692.8:ENST00000417960.5:ENST00000428567.5:ENST00000441497.6	protein_coding	protein_coding	protein_coding	protein_coding	7	94	2	1.86436	1.943505	2.02265	0.0449017	0.0134322	0.149888	0.101281
chr16	47470475	47470575	6343393	0	+	0.5	(0.476,0.515]	chr16	608849	61	INTRON	INTRON	PHKB	ENSG00000102893.17	ENST00000566037.6:ENST00000566044.5:ENST00000299167.12:ENST00000696809.1:ENST00000323584.10:ENST00000565424.2:ENST00000567402.5:ENST00000563376.5:ENST00000564873.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	42	2	1.48023	1.943155	2.40608	0.0559072	0.0425709	0.18407	0.148082
chr4	82898262	82898362	2180185	0	-	0.23	[0,0.28]	chr4	214423	2	SS3_PROX	SS3_PROX:INTRON	SEC31A:THAP9-AS1	ENSG00000138674.17:ENSG00000251022.6	ENST00000355196.6:ENST00000503210.5:ENST00000507676.5:ENST00000506495.5:ENST00000507051.1:ENST00000504520.6:ENST00000504792.6:ENST00000512932.5:ENST00000511271.5:ENST00000508772.5:ENST00000513581.5:ENST00000504718.5:ENST00000505028.5:ENST00000507660.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	9	130	2	1.68134	1.94307	2.2048	0.0251592	0.00827032	0.133479	0.0774402
chr3	128066020	128066108	1496669	0	+	0.454545	(0.44,0.476]	chr3	156283	4	INTRON	INTRON	SEC61A1	ENSG00000058262.10	ENST00000464451.5:ENST00000243253.8:ENST00000424880.2:ENST00000483956.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	60	2	1.81595	1.943055	2.07016	0.0317953	0.0151815	0.14477	0.0994339
chr6	15253061	15253161	2823016	0	+	0.52	(0.515,0.57]	chr6	265190	37	INTRON	INTRON	JARID2	ENSG00000008083.14	ENST00000341776.7:ENST00000397311.4	protein_coding	protein_coding	protein_coding	protein_coding	12	96	2	1.73179	1.9430399999999999	2.15429	0.00976557	0.00272344	0.0834753	0.0481781
chrX	44904785	44904885	7648918	0	+	0.38	(0.378,0.408]	chrX	782726	304	INTRON	INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000675440.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000621147.5:ENST00000475233.1:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	83	2	1.49153	1.942985	2.39444	0.0204442	0.0122858	0.122204	0.091087
chr15	68098581	68098681	6056399	0	+	0.36	(0.35,0.378]	chr15	576567	103	INTRON	INTRON	PIAS1	ENSG00000033800.14	ENST00000564915.5:ENST00000249636.11:ENST00000562190.1:ENST00000545237.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	74	2	1.49028	1.9427349999999999	2.39519	0.0590834	0.00401951	0.168067	0.0578189
chr16	29544283	29544381	6471030	0	-	0.326531	(0.32,0.35]	chr16	625223	22	INTRON	INTRON	ENSG00000288632:SMG1P2	ENSG00000288632.1:ENSG00000205534.6	ENST00000675579.1:ENST00000566127.1	lncRNA	lncRNA	lncRNA:transcribed_unprocessed_pseudogene	lncRNA:transcribed_unprocessed_pseudogene	6	66	2	1.49965	1.9427349999999999	2.38582	0.0542985	0.0138529	0.182243	0.0953077
chr4	24562095	24562194	2118786	0	-	0.343434	(0.32,0.35]	chr4	209242	53	INTRON	INTRON	DHX15	ENSG00000109606.13	ENST00000336812.5	protein_coding	protein_coding	protein_coding	protein_coding	6	66	2	1.49965	1.9427349999999999	2.38582	0.0542985	0.0138529	0.182243	0.0953077
chr1	179228140	179228240	593064	0	-	0.48	(0.476,0.515]	chr1	71074	852	INTRON	INTRON	ABL2	ENSG00000143322.21	ENST00000502732.6:ENST00000367623.8:ENST00000507173.5:ENST00000511413.5:ENST00000668691.1:ENST00000392043.4:ENST00000660584.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	9	83	2	1.32251	1.94271	2.56291	0.0533705	0.00222582	0.179876	0.0421176
chr2	71411162	71411261	807840	0	+	0.454545	(0.44,0.476]	chr2	90285	20	INTRON	INTRON	ZNF638	ENSG00000075292.19	ENST00000409544.5:ENST00000264447.9:ENST00000487638.5:ENST00000494241.5:ENST00000409407.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	49	2	1.9039	1.94268	1.98146	0.0501498	0.0186013	0.156383	0.117264
chr2	172581889	172581989	920165	0	+	0.41	(0.408,0.44]	chr2	101374	107	INTRON	INTRON	PDK1	ENSG00000152256.14	ENST00000392571.6:ENST00000410055.5:ENST00000282077.8:ENST00000466437.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	11	102	2	1.87691	1.942665	2.00842	0.0108512	0.00500589	0.0873034	0.0646039
chr1	100115741	100115840	515686	0	-	0.474747	(0.44,0.476]	chr1	60466	49	INTRON	INTRON	SASS6	ENSG00000156876.10	ENST00000462159.1:ENST00000287482.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	84	2	1.90381	1.942645	1.98148	0.0260626	0.00431586	0.122153	0.0599409
chr12	49743116	49743216	5134943	0	+	0.49	(0.476,0.515]	chr12	484113	3	SS3_PROX	SS3_PROX:INTRON	TMBIM6	ENSG00000139644.13	ENST00000548809.5:ENST00000551154.5:ENST00000546796.5:ENST00000549966.5:ENST00000547832.5:ENST00000547187.5:ENST00000267115.10:ENST00000552699.5:ENST00000552635.5:ENST00000546914.5:ENST00000548894.5:ENST00000549445.5:ENST00000550951.5:ENST00000549385.5:ENST00000548201.5:ENST00000548713.5:ENST00000423828.5:ENST00000550445.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	88	2	1.57103	1.942635	2.31424	0.0307896	0.00308038	0.143385	0.0496438
chr3	45679554	45679653	1416965	0	+	0.464646	(0.44,0.476]	chr3	148646	26	UTR3	UTR3:EXON_MRNA	LIMD1	ENSG00000144791.10	ENST00000273317.5	protein_coding	protein_coding	protein_coding	protein_coding	7	69	2	1.90375	1.942605	1.98146	0.0186013	0.0156406	0.117264	0.101393
chr10	96877405	96877505	4503417	0	+	0.59	(0.57,1]	chr10	414536	186	INTRON	INTRON	LCOR	ENSG00000196233.14	ENST00000676067.1:ENST00000676257.1:ENST00000676187.1:ENST00000675151.1:ENST00000675687.1:ENST00000675251.1:ENST00000676123.1:ENST00000371103.8:ENST00000675471.1:ENST00000421806.4:ENST00000675902.1:ENST00000540664.6:ENST00000676414.1:ENST00000675537.1:ENST00000675117.1:ENST00000675125.1:ENST00000356016.7:ENST00000371097.8:ENST00000676381.1:ENST00000674796.1:ENST00000674725.1:ENST00000675971.1:ENST00000676373.1:ENST00000676314.1:ENST00000675915.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	40	2	1.72406	1.94253	2.161	0.0261443	0.00462668	0.122221	0.062717
chr16	16553299	16553399	6311395	0	+	0.33	(0.32,0.35]	chr16	604098	533	INTRON	INTRON	ENSG00000260126	ENSG00000260126.2	ENST00000567465.2	lncRNA	lncRNA	lncRNA	lncRNA	7	80	2	1.72405	1.94252	2.16099	0.0275418	0.0127227	0.137011	0.0926667
chr12	122084464	122084564	5239919	0	+	0.35	(0.32,0.35]	chr12	497496	48	INTRON	INTRON	MLXIP	ENSG00000175727.14	ENST00000319080.12	protein_coding	protein_coding	protein_coding	protein_coding	6	66	2	1.38564	1.9424649999999999	2.49929	0.0793006	0.00776612	0.199711	0.0787356
chr9	133258730	133258828	4369863	0	-	0.418367	(0.408,0.44]	chr9	402050	2	INTRON	INTRON	ABO	ENSG00000175164.16	ENST00000679909.1:ENST00000453660.4:ENST00000647353.1:ENST00000611156.4:ENST00000538324.2:ENST00000651471.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	115	2	1.7971	1.942415	2.08773	0.0087716100000000009	0.00404379	0.0789198	0.0578376
chr18	80120641	80120741	6938204	0	+	0.43	(0.408,0.44]	chr18	686196	26	INTRON	INTRON	ADNP2	ENSG00000101544.9	ENST00000262198.9:ENST00000560752.5:ENST00000559951.5:ENST00000560561.1:ENST00000561195.1	protein_coding	protein_coding	protein_coding	protein_coding	8	76	2	1.92319	1.9422549999999998	1.96132	0.0247322	0.00701866	0.12011	0.0754576
chr15	80063325	80063425	6071069	0	+	0.3	(0.28,0.32]	chr15	578304	22	INTRON	INTRON	ZFAND6	ENSG00000086666.19	ENST00000613266.4:ENST00000561060.5:ENST00000559157.5:ENST00000261749.11:ENST00000561012.5:ENST00000564367.5:ENST00000558494.5:ENST00000618205.4:ENST00000560470.5	protein_coding	protein_coding	protein_coding	protein_coding	16	188	2	1.81545	1.9422350000000002	2.06902	0.00533241	0.00435826	0.0640926	0.060356
chr2	241685026	241685115	1349422	0	-	0.460674	(0.44,0.476]	chr2	141816	3	SS3_PROX	SS3_PROX:INTRON	DTYMK	ENSG00000168393.13	ENST00000400770.6:ENST00000305784.7:ENST00000445261.5:ENST00000432348.5:ENST00000420144.1:ENST00000493095.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	82	2	1.49801	1.9421849999999998	2.38636	0.0300375	0.0047296	0.142135	0.0600445
chr3	47644259	47644359	1683672	0	-	0.4	(0.378,0.408]	chr3	171996	51	INTRON	INTRON	SMARCC1	ENSG00000173473.11	ENST00000254480.10:ENST00000425518.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	98	2	1.59634	1.942135	2.28793	0.0244222	0.00291235	0.12011	0.0494641
chr16	24208577	24208677	6327512	0	+	0.45	(0.44,0.476]	chr16	605806	2	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1	protein_coding	protein_coding	protein_coding	protein_coding	7	63	2	1.74644	1.9421149999999998	2.13779	0.0264596	0.0165016	0.122506	0.110334
chr4	78809668	78809768	1981718	0	+	0.28	[0,0.28]	chr4	198463	326	INTRON	INTRON	BMP2K	ENSG00000138756.19	ENST00000389010.7:ENST00000502613.3:ENST00000502871.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	100	2	1.4843	1.9421050000000002	2.39991	0.0369553	0.0163416	0.155605	0.101571
chr1	51855813	51855913	455067	0	-	0.38	(0.378,0.408]	chr1	54627	149	INTRON	INTRON	NRDC	ENSG00000078618.23	ENST00000354831.11:ENST00000539524.5:ENST00000352171.12:ENST00000491410.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	38	2	1.65821	1.942055	2.2259	0.0662381	0.0506302	0.181924	0.17547
chr15	92989951	92990050	6104625	0	+	0.383838	(0.378,0.408]	chr15	581558	39	INTRON	INTRON	CHD2	ENSG00000173575.22	ENST00000626874.2:ENST00000394196.9:ENST00000635856.1:ENST00000637572.1:ENST00000636881.1:ENST00000636306.1:ENST00000637789.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	38	2	1.65821	1.942055	2.2259	0.0662381	0.0506302	0.181924	0.17547
chr8	26345831	26345930	3716645	0	+	0.393939	(0.378,0.408]	chr8	345395	55	INTRON	INTRON	PPP2R2A	ENSG00000221914.11	ENST00000380737.8:ENST00000520329.5:ENST00000518254.5:ENST00000524169.5:ENST00000518397.5:ENST00000522535.5:ENST00000665949.1:ENST00000521095.5:ENST00000660435.1:ENST00000523925.5:ENST00000524099.5:ENST00000315985.7:ENST00000519636.5:ENST00000522482.5:ENST00000521557.5:ENST00000519439.5:ENST00000521484.5:ENST00000523964.5:ENST00000667651.1:ENST00000657943.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	51	2	1.88729	1.942035	1.99678	0.0532327	0.0177959	0.162538	0.113452
chr14	50308299	50308398	5889303	0	-	0.565657	(0.515,0.57]	chr14	559085	49	INTRON	INTRON	L2HGDH	ENSG00000087299.12	ENST00000261699.8:ENST00000267436.9:ENST00000421284.7:ENST00000555423.5:ENST00000555610.1:ENST00000554191.5:ENST00000556393.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	58	2	1.43029	1.9420199999999999	2.45375	0.0645632	0.00273605	0.179192	0.0483437
chr17	37212877	37212976	6761061	0	-	0.333333	(0.32,0.35]	chr17	664773	20	INTRON	INTRON	ACACA	ENSG00000278540.5	ENST00000616317.5:ENST00000614428.4:ENST00000612895.4:ENST00000617649.4:ENST00000614450.4:ENST00000612120.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	58	2	1.77704	1.941995	2.10695	0.0719969	0.0127483	0.187322	0.0987441
chr4	61151	61251	1905368	0	+	0.51	(0.476,0.515]	chr4	191003	6	INTRON	INTRON	ZNF595	ENSG00000272602.6	ENST00000608255.2:ENST00000609518.5:ENST00000509152.3:ENST00000610261.6	protein_coding	protein_coding	protein_coding	protein_coding	66	610	2	1.89688	1.94194	1.987	4.68585e-4	1.95487e-4	0.0200452	0.0122528
chr10	35367258	35367358	4424810	0	+	0.41	(0.408,0.44]	chr10	407899	297	INTRON	INTRON	CCNY	ENSG00000108100.18	ENST00000374706.5:ENST00000490012.6:ENST00000493157.6:ENST00000374704.8:ENST00000265375.13:ENST00000339497.7:ENST00000492478.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	37	2	1.69566	1.941865	2.18807	0.0708044	0.0453922	0.184528	0.164236
chr20	35726444	35726542	7336390	0	-	0.377551	(0.35,0.378]	chr20	747462	9	INTRON	INTRON	RBM39	ENSG00000131051.24	ENST00000253363.11:ENST00000639702.1:ENST00000656873.1:ENST00000463004.5:ENST00000361162.10:ENST00000461283.5:ENST00000403542.6:ENST00000338163.10:ENST00000528062.7:ENST00000429968.5:ENST00000444878.5:ENST00000665058.1:ENST00000492779.5:ENST00000448303.5:ENST00000374038.7:ENST00000412738.5:ENST00000434927.5:ENST00000425184.5:ENST00000481037.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	82	2	1.81752	1.94182	2.06612	0.0164908	0.0130467	0.102419	0.0994973
chr3	25754042	25754141	1642545	0	-	0.323232	(0.32,0.35]	chr3	168666	24	INTRON	INTRON	NGLY1	ENSG00000151092.18	ENST00000280700.10:ENST00000428257.5:ENST00000675217.1:ENST00000676225.1:ENST00000493324.5:ENST00000396649.7:ENST00000308710.9:ENST00000280699.13:ENST00000674841.1:ENST00000675234.1:ENST00000463611.2:ENST00000417874.6:ENST00000427041.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	58	2	1.65179	1.941805	2.23182	0.068598	0.0245569	0.184298	0.131869
chr1	50539091	50539191	448028	0	-	0.38	(0.378,0.408]	chr1	54184	1	SS5_PROX	SS5_PROX:INTRON	FAF1	ENSG00000185104.21	ENST00000396153.7:ENST00000494400.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	51	2	1.72045	1.94174	2.16303	0.0424671	0.0252473	0.161763	0.12011
chr8	127940264	127940359	3861520	0	+	0.378947	(0.378,0.408]	chr8	355462	9	EXON_LNCRNA	EXON_LNCRNA:INTRON	PVT1	ENSG00000249859.13	ENST00000667305.1:ENST00000690350.1:ENST00000653522.1:ENST00000661830.1:ENST00000657289.1:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000656880.1:ENST00000660200.1:ENST00000657211.1:ENST00000653845.1:ENST00000517525.2:ENST00000665856.1:ENST00000651587.1:ENST00000692980.1:ENST00000666353.1:ENST00000654324.1:ENST00000657693.1:ENST00000666080.1:ENST00000667539.1:ENST00000521951.1:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000664293.1:ENST00000662410.1:ENST00000670795.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000654091.1:ENST00000657356.1:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000662061.1:ENST00000656491.1:ENST00000667714.1:ENST00000654105.1:ENST00000665721.1:ENST00000660438.1:ENST00000659326.1:ENST00000666842.1:ENST00000517790.2:ENST00000654369.1:ENST00000664995.1:ENST00000656532.1:ENST00000661988.1:ENST00000670714.1:ENST00000669951.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000656693.1:ENST00000668123.1:ENST00000666776.1:ENST00000664299.1:ENST00000669272.1:ENST00000659912.1:ENST00000670532.1:ENST00000660896.1:ENST00000667149.1:ENST00000523068.2:ENST00000519481.6:ENST00000669082.1:ENST00000671088.1:ENST00000670204.1:ENST00000652695.1:ENST00000517838.6:ENST00000663461.1:ENST00000513868.6:ENST00000670626.1:ENST00000669407.1	lncRNA	lncRNA	lncRNA	lncRNA	5	51	2	1.72045	1.94174	2.16303	0.0424671	0.0252473	0.161763	0.12011
chr16	58618586	58618686	6496270	0	-	0.45	(0.44,0.476]	chr16	628638	187	INTRON	INTRON	CNOT1	ENSG00000125107.19	ENST00000317147.10:ENST00000569240.5:ENST00000567188.5:ENST00000441024.6:ENST00000565605.5:ENST00000564557.1:ENST00000569916.1:ENST00000565697.1:ENST00000569020.5:ENST00000568158.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	16	150	2	1.75695	1.9417300000000002	2.12651	0.00813631	0.00106845	0.0766625	0.0300133
chr11	9432971	9433069	4729918	0	+	0.469388	(0.44,0.476]	chr11	437916	16	INTRON	INTRON	IPO7	ENSG00000205339.10	ENST00000379719.8	protein_coding	protein_coding	protein_coding	protein_coding	11	94	2	1.34727	1.94167	2.53607	0.0344229	0.00255314	0.147767	0.0449364
chr19	10402084	10402183	7136039	0	-	0.424242	(0.408,0.44]	chr19	719569	10	INTRON	INTRON	CDC37	ENSG00000105401.9	ENST00000222005.7:ENST00000591248.5:ENST00000589629.5:ENST00000593124.1:ENST00000588869.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	39	2	1.58763	1.941665	2.2957	0.0639217	0.0516458	0.177824	0.176696
chr5	119293295	119293395	2461843	0	+	0.41	(0.408,0.44]	chr5	235842	240	INTRON	INTRON	TNFAIP8	ENSG00000145779.8	ENST00000274456.6:ENST00000388882.5	protein_coding	protein_coding	protein_coding	protein_coding	4	39	2	1.58763	1.941665	2.2957	0.0639217	0.0516458	0.177824	0.176696
chr11	47493340	47493438	4949794	0	-	0.459184	(0.44,0.476]	chr11	464206	40	INTRON	INTRON	CELF1	ENSG00000149187.19	ENST00000310513.10:ENST00000687097.1:ENST00000395292.6:ENST00000531165.5:ENST00000532048.5:ENST00000530151.5:ENST00000525841.5:ENST00000528434.5:ENST00000543178.5:ENST00000535982.1:ENST00000526419.1:ENST00000528538.5:ENST00000526277.1	protein_coding	protein_coding	protein_coding	protein_coding	8	77	2	1.79873	1.94163	2.08453	0.0223888	0.00689	0.116918	0.0750118
chr12	116251689	116251789	5425291	0	-	0.52	(0.515,0.57]	chr12	518291	136	INTRON	INTRON	MED13L	ENSG00000123066.9	ENST00000281928.9:ENST00000650226.1:ENST00000548743.2:ENST00000551197.2:ENST00000650375.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	73	2	1.86218	1.941625	2.02107	0.0100169	0.00910188	0.0880217	0.0809976
chr2	144462168	144462252	1241221	0	-	0.297619	(0.28,0.32]	chr2	131709	5	UTR3	UTR3:EXON_MRNA:INTRON	ZEB2	ENSG00000169554.23	ENST00000636471.1:ENST00000627532.3:ENST00000638128.1:ENST00000637304.1:ENST00000636179.1:ENST00000636820.1:ENST00000419938.5:ENST00000409487.7:ENST00000636732.2:ENST00000636026.2:ENST00000675069.1:ENST00000689298.1:ENST00000539609.7:ENST00000558170.6:ENST00000303660.8:ENST00000427902.5:ENST00000637267.2:ENST00000392861.6:ENST00000431672.4:ENST00000409211.5:ENST00000465308.5:ENST00000434448.5:ENST00000472146.5:ENST00000461784.3:ENST00000476394.5:ENST00000637591.2:ENST00000479735.1:ENST00000453352.5:ENST00000435831.5:ENST00000444559.5:ENST00000630572.2:ENST00000628473.1:ENST00000484313.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	73	2	1.54521	1.94146	2.33771	0.0548272	0.0142701	0.165463	0.103838
chr3	50333045	50333143	1695966	0	-	0.428571	(0.408,0.44]	chr3	174223	5	INTRON	INTRON	RASSF1	ENSG00000068028.18	ENST00000327761.7:ENST00000616212.4:ENST00000482447.1:ENST00000357043.6:ENST00000395117.6:ENST00000359365.9:ENST00000395126.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	78	2	1.91269	1.9412099999999999	1.96973	0.0153219	0.0108773	0.100173	0.0923273
chr17	59110630	59110727	6801948	0	-	0.587629	(0.57,1]	chr17	671831	9	UTR3	UTR3:EXON_MRNA	SKA2	ENSG00000182628.13	ENST00000330137.12	protein_coding	protein_coding	protein_coding	protein_coding	7	35	2	1.71424	1.9410150000000002	2.16779	0.0279017	0.00900694	0.137011	0.0803518
chr6	28904273	28904371	3075393	0	-	0.571429	(0.57,1]	chr6	285923	1	CDS	CDS:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TRIM27	ENSG00000204713.11	ENST00000377194.7:ENST00000377199.4:ENST00000481474.5:ENST00000414543.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	35	2	1.71424	1.9410150000000002	2.16779	0.0279017	0.00900694	0.137011	0.0803518
chr6	26198658	26198758	3071032	0	-	0.29	(0.28,0.32]	chr6	285440	4	SS5_PROX	SS5_PROX:INTRON	ENSG00000282988	ENSG00000282988.2	ENST00000635641.1:ENST00000650491.1:ENST00000635200.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	13	159	2	1.8065	1.941005	2.07551	0.0113173	0.003536	0.0886226	0.0546236
chrX	103679446	103679545	7856507	0	-	0.474747	(0.44,0.476]	chrX	801086	4	INTRON	INTRON	MORF4L2	ENSG00000123562.18	ENST00000360458.5:ENST00000441076.7:ENST00000433176.6:ENST00000451301.5:ENST00000434230.5:ENST00000418819.5:ENST00000442614.5:ENST00000492116.5:ENST00000422355.5:ENST00000474653.5:ENST00000498064.1:ENST00000467755.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	23	204	2	1.70866	1.94098	2.1733	0.00280161	0.0011931	0.0488779	0.0315806
chr15	64102772	64102872	6042924	0	+	0.5	(0.476,0.515]	chr15	575486	62	INTRON	INTRON	SNX1	ENSG00000028528.15	ENST00000560829.5:ENST00000559061.5:ENST00000559844.6:ENST00000380285.7:ENST00000261889.9:ENST00000560260.5:ENST00000561026.5:ENST00000625244.2:ENST00000558040.5:ENST00000559389.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	37	2	1.74317	1.940855	2.13854	0.0776563	0.0396373	0.196285	0.161534
chr5	139672258	139672357	2501440	0	+	0.484848	(0.476,0.515]	chr5	239084	61	INTRON	INTRON	CXXC5	ENSG00000171604.12	ENST00000502295.1:ENST00000504944.1:ENST00000302517.8:ENST00000507139.5:ENST00000504844.1:ENST00000502336.5:ENST00000520967.1:ENST00000511048.1:ENST00000512816.1:ENST00000509238.1	protein_coding	protein_coding	protein_coding	protein_coding	4	37	2	1.74317	1.940855	2.13854	0.0776563	0.0396373	0.196285	0.161534
chr22	19501617	19501715	7477059	0	+	0.244898	[0,0.28]	chr22	762436	21	INTRON	INTRON	CDC45	ENSG00000093009.11	ENST00000407835.6:ENST00000437685.6:ENST00000438587.6:ENST00000672837.1:ENST00000263201.7:ENST00000404724.7:ENST00000428937.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	60	2	1.8986	1.940755	1.98291	0.0531512	0.0494143	0.179787	0.156195
chr12	57340817	57340917	5338355	0	-	0.4	(0.378,0.408]	chr12	510707	2	SS5_PROX	SS5_PROX:INTRON	R3HDM2	ENSG00000179912.21	ENST00000402412.6:ENST00000347140.7:ENST00000634871.1:ENST00000403821.6:ENST00000448732.1	protein_coding	protein_coding	protein_coding	protein_coding	5	51	2	1.58349	1.940735	2.29798	0.0653091	0.0147606	0.180158	0.106702
chr20	32785359	32785450	7256887	0	+	0.461538	(0.44,0.476]	chr20	737138	1	INTRON	INTRON	DNMT3B	ENSG00000088305.19	ENST00000696232.1:ENST00000328111.6:ENST00000696231.1:ENST00000348286.6:ENST00000353855.6:ENST00000696233.1:ENST00000443239.7:ENST00000696234.1:ENST00000696235.1:ENST00000456297.6:ENST00000696236.1:ENST00000696237.1:ENST00000201963.3:ENST00000696238.1:ENST00000696239.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	77	2	1.72421	1.940735	2.15726	0.0285163	0.00508124	0.12666	0.0646039
chr7	77701943	77702043	3343124	0	+	0.46	(0.44,0.476]	chr7	311432	42	INTRON	INTRON	RSBN1L	ENSG00000187257.16	ENST00000334955.13:ENST00000445288.5	protein_coding	protein_coding	protein_coding	protein_coding	8	77	2	1.72421	1.940735	2.15726	0.0285163	0.00508124	0.12666	0.0646039
chr9	131232374	131232464	4216737	0	+	0.433333	(0.408,0.44]	chr9	386706	1	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	NUP214	ENSG00000126883.19	ENST00000695497.1:ENST00000695498.1:ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000524578.6:ENST00000453861.6:ENST00000483497.6:ENST00000695500.1:ENST00000650694.1:ENST00000695501.1:ENST00000476004.5:ENST00000528406.1:ENST00000496921.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	60	2	1.8749	1.940595	2.00629	0.0264246	0.0189661	0.133676	0.108861
chr11	2991693	2991793	4891996	0	-	0.5	(0.476,0.515]	chr11	458384	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	NAP1L4	ENSG00000205531.13	ENST00000620138.4:ENST00000380542.9:ENST00000526115.5:ENST00000532325.6:ENST00000448187.5:ENST00000399614.6:ENST00000430811.5:ENST00000529361.5:ENST00000528968.5:ENST00000526842.5:ENST00000531291.5:ENST00000534372.1	protein_coding	protein_coding	protein_coding	protein_coding	9	82	2	1.82399	1.9405649999999999	2.05714	0.0156961	0.00866166	0.101453	0.0842392
chr12	111588557	111588657	5413125	0	-	0.46	(0.44,0.476]	chr12	516941	238	INTRON	INTRON	ATXN2	ENSG00000204842.18	ENST00000642389.2:ENST00000608853.5:ENST00000672613.1:ENST00000673436.1:ENST00000643669.2:ENST00000616825.4:ENST00000389153.10:ENST00000550104.5:ENST00000483311.6:ENST00000672335.1:ENST00000673557.1:ENST00000673283.1:ENST00000673449.1:ENST00000535949.5:ENST00000542287.6:ENST00000644883.1:ENST00000647305.1:ENST00000671792.1:ENST00000392645.6:ENST00000672105.1:ENST00000549455.1:ENST00000548492.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	14	121	2	1.32379	1.9405649999999999	2.55734	0.0320814	7.72402e-4	0.132091	0.0255867
chr4	774173	774272	2093340	0	-	0.434343	(0.408,0.44]	chr4	206823	62	INTRON	INTRON	ENSG00000249592	ENSG00000249592.7	ENST00000660016.1:ENST00000665579.1:ENST00000503571.5:ENST00000652800.1:ENST00000507446.1	lncRNA	lncRNA	lncRNA	lncRNA	11	105	2	1.54382	1.9405100000000002	2.3372	0.0284747	0.00122451	0.12666	0.0324961
chr17	35662505	35662604	6600308	0	+	0.30303	(0.28,0.32]	chr17	642324	25	INTRON	INTRON	AP2B1	ENSG00000006125.18	ENST00000621914.4:ENST00000620039.4:ENST00000616681.4:ENST00000621668.4:ENST00000610402.5:ENST00000612035.4:ENST00000614600.4:ENST00000612116.5:ENST00000618940.4:ENST00000619183.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	52	2	1.91611	1.94043	1.96475	0.0539102	0.0428385	0.164153	0.162255
chr8	104570732	104570832	4014539	0	-	0.3	(0.28,0.32]	chr8	367439	384	INTRON	INTRON	LRP12	ENSG00000147650.12	ENST00000424843.6:ENST00000276654.10:ENST00000520770.1:ENST00000519675.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	52	2	1.91611	1.94043	1.96475	0.0539102	0.0428385	0.164153	0.162255
chr10	74000271	74000371	4454522	0	+	0.52	(0.515,0.57]	chr10	411385	15	INTRON	INTRON	VCL	ENSG00000035403.18	ENST00000623461.3:ENST00000372755.7:ENST00000624354.3:ENST00000211998.10:ENST00000478896.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	27	214	2	1.83273	1.9402949999999999	2.04786	0.00135015	5.9443e-4	0.0338354	0.0225293
chr22	21584465	21584565	7481872	0	+	0.39	(0.378,0.408]	chr22	763232	157	INTRON	INTRON	UBE2L3	ENSG00000185651.16	ENST00000458578.6:ENST00000545681.2:ENST00000696046.1:ENST00000342192.9:ENST00000496722.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	70	2	1.93153	1.9402949999999999	1.94906	0.023282	0.0127237	0.118176	0.0986314
chr1	51758540	51758635	100826	0	+	0.368421	(0.35,0.378]	chr1	13329	12	INTRON	INTRON	OSBPL9	ENSG00000117859.19	ENST00000371714.5:ENST00000428468.6:ENST00000447887.5:ENST00000495776.5:ENST00000435274.6:ENST00000453295.5:ENST00000489990.5:ENST00000532975.5:ENST00000534040.5:ENST00000527631.5:ENST00000531828.5:ENST00000361556.9:ENST00000473207.6:ENST00000533884.5:ENST00000526917.5:ENST00000462759.5:ENST00000486942.5:ENST00000524620.1:ENST00000528603.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	10	104	2	1.60176	1.94027	2.27878	0.0213692	0.0041508	0.123719	0.0568675
chr2	20345618	20345718	1076735	0	-	0.49	(0.476,0.515]	chr2	115047	122	INTRON	INTRON	PUM2	ENSG00000055917.16	ENST00000361078.7:ENST00000442400.5:ENST00000420234.5:ENST00000429419.6:ENST00000432105.5:ENST00000446940.5:ENST00000424110.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	11	104	2	1.75694	1.9402050000000002	2.12347	0.0175942	0.00222235	0.105143	0.0435144
chr7	129035556	129035656	3636387	0	-	0.48	(0.476,0.515]	chr7	338142	170	INTRON	INTRON	TNPO3	ENSG00000064419.14	ENST00000627585.2:ENST00000265388.10:ENST00000471234.5:ENST00000482320.5:ENST00000471166.1	protein_coding	protein_coding	protein_coding	protein_coding	18	153	2	1.67571	1.94016	2.20461	0.00422481	0.0029162	0.0595466	0.0480256
chr1	20768360	20768459	389671	0	-	0.535354	(0.515,0.57]	chr1	46549	3	INTRON	INTRON	HP1BP3	ENSG00000127483.19	ENST00000438032.6:ENST00000312239.10:ENST00000375003.6:ENST00000419948.5:ENST00000424732.5	protein_coding	protein_coding	protein_coding	protein_coding	7	53	2	1.49552	1.94014	2.38476	0.0385038	0.0110593	0.159277	0.0873897
chr2	47866092	47866192	1115719	0	-	0.52	(0.515,0.57]	chr2	119689	2	SS3_PROX	SS3_PROX:INTRON	FBXO11	ENSG00000138081.22	ENST00000684712.1:ENST00000682451.1:ENST00000403359.8:ENST00000402508.5:ENST00000683894.1:ENST00000681999.1:ENST00000682975.1:ENST00000684085.1:ENST00000492225.5:ENST00000424163.2:ENST00000480038.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	53	2	1.44237	1.9401	2.43783	0.0456196	0.00916404	0.164236	0.0812949
chr6	4853002	4853102	2791629	0	+	0.53	(0.515,0.57]	chr6	263602	163	INTRON	INTRON	CDYL	ENSG00000153046.18	ENST00000328908.9:ENST00000491864.1:ENST00000440139.5:ENST00000483019.1:ENST00000397588.8:ENST00000472453.5:ENST00000449732.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	10	81	2	1.80295	1.94008	2.07721	0.00965183	0.0067022	0.0826279	0.0738715
chr7	105011710	105011807	3601068	0	-	0.298969	(0.28,0.32]	chr7	336036	1	EXON_LNCRNA	EXON_LNCRNA:INTRON	LINC01004	ENSG00000228393.5	ENST00000450686.1:ENST00000655204.2:ENST00000445184.1:ENST00000689371.1:ENST00000690819.1:ENST00000688692.1:ENST00000693045.1:ENST00000684783.1:ENST00000685115.1:ENST00000688127.1:ENST00000693130.1:ENST00000687259.1:ENST00000689586.1:ENST00000687408.1:ENST00000688097.1:ENST00000687900.1:ENST00000684829.1	lncRNA	lncRNA	lncRNA	lncRNA	8	96	2	1.78855	1.94	2.09145	0.0172565	0.0159081	0.109464	0.104099
chr16	70436451	70436551	6511439	0	-	0.35	(0.32,0.35]	chr16	630693	135	INTRON	INTRON	ST3GAL2	ENSG00000157350.13	ENST00000342907.3:ENST00000566097.1:ENST00000567586.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	96	2	1.60034	1.939865	2.27939	0.0221816	0.00844518	0.124191	0.0776969
chr7	12400464	12400563	3485407	0	-	0.262626	[0,0.28]	chr7	325970	63	INTRON	INTRON	VWDE	ENSG00000146530.15	ENST00000275358.8:ENST00000452576.6:ENST00000521169.5:ENST00000326715.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	143	2	1.91265	1.9397799999999998	1.96691	0.0127963	0.0112687	0.0944526	0.0926667
chr3	177138338	177138438	1871854	0	-	0.51	(0.476,0.515]	chr3	187422	22	INTRON	INTRON	TBL1XR1	ENSG00000177565.18	ENST00000457928.7:ENST00000430069.5:ENST00000673974.1:ENST00000352800.10:ENST00000422442.6:ENST00000428970.5:ENST00000424913.5:ENST00000437738.5:ENST00000431421.5:ENST00000635794.1:ENST00000630796.2:ENST00000450267.5:ENST00000630833.2:ENST00000431674.5:ENST00000422066.5:ENST00000443315.5:ENST00000627825.2:ENST00000427349.5:ENST00000413084.5:ENST00000637137.1:ENST00000491623.2:ENST00000637544.1:ENST00000636187.1:ENST00000636912.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	56	2	1.82798	1.9397600000000002	2.05154	0.0336015	0.0184548	0.134145	0.116598
chr7	105124585	105124684	3601235	0	-	0.383838	(0.378,0.408]	chr7	336054	62	INTRON	INTRON	SRPK2	ENSG00000135250.17	ENST00000465072.5:ENST00000393651.8:ENST00000357311.7:ENST00000466917.1:ENST00000485455.1:ENST00000477925.5:ENST00000489828.5:ENST00000474770.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	70	2	1.90812	1.9397600000000002	1.9714	0.0264295	0.0109363	0.122506	0.0924799
chr12	22630578	22630678	5094796	0	+	0.35	(0.32,0.35]	chr12	481224	45	INTRON	INTRON	ETNK1	ENSG00000139163.16	ENST00000671733.1:ENST00000335148.8:ENST00000672951.1:ENST00000266517.9:ENST00000538218.2:ENST00000673496.1:ENST00000673406.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	80	2	1.77253	1.93974	2.10695	0.0271031	0.0127483	0.123904	0.0987441
chr7	127908410	127908510	3404981	0	+	0.37	(0.35,0.378]	chr7	318161	32	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000465900.5:ENST00000486037.1:ENST00000484767.5:ENST00000492840.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	61	2	1.68908	1.9397099999999998	2.19034	0.0301354	0.023941	0.142482	0.119443
chr12	112380352	112380452	5417734	0	-	0.62	(0.57,1]	chr12	517670	603	INTRON	INTRON	HECTD4	ENSG00000173064.14	ENST00000550722.5:ENST00000377560.9:ENST00000682272.1:ENST00000550724.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	28	2	1.34554	1.9396849999999999	2.53383	0.0508971	0.02547	0.176247	0.12011
chr19	2197034	2197132	6996509	0	+	0.642857	(0.57,1]	chr19	693461	21	INTRON	INTRON	DOT1L	ENSG00000104885.19	ENST00000398665.8:ENST00000686010.1:ENST00000452696.5	protein_coding	protein_coding	protein_coding	protein_coding	7	35	2	1.79978	1.93967	2.07956	0.0199509	0.013114	0.109608	0.0998629
chrX	114029569	114029669	7868336	0	-	0.41	(0.408,0.44]	chrX	801551	377	INTRON	INTRON	XACT	ENSG00000241743.4	ENST00000468762.3:ENST00000649506.1	lncRNA	lncRNA	lncRNA	lncRNA	5	50	2	1.74775	1.93966	2.13157	0.0735403	0.0109031	0.190238	0.0923273
chr2	151442758	151442858	893548	0	+	0.42	(0.408,0.44]	chr2	98955	1	SS3_PROX	SS3_PROX:INTRON	RIF1	ENSG00000080345.18	ENST00000453091.6:ENST00000428287.6:ENST00000444746.7:ENST00000243326.9:ENST00000414861.6:ENST00000430328.6	protein_coding	protein_coding	protein_coding	protein_coding	16	151	2	1.75106	1.9396499999999999	2.12824	0.0084885	0.00105694	0.0778788	0.0299563
chr6	42082572	42082672	2865005	0	+	0.52	(0.515,0.57]	chr6	271004	29	UTR3	UTR3:EXON_MRNA:INTRON	TAF8	ENSG00000137413.17	ENST00000372982.8:ENST00000456846.6:ENST00000372977.8:ENST00000688562.1:ENST00000687266.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	32	2	1.7492	1.9394550000000002	2.12971	0.0757903	0.0382504	0.194427	0.15832
chrX	71543566	71543666	7680052	0	+	0.37	(0.35,0.378]	chrX	786397	51	INTRON	INTRON	OGT	ENSG00000147162.14	ENST00000373719.8:ENST00000488174.5:ENST00000373701.7:ENST00000498566.3:ENST00000444774.3:ENST00000455587.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	74	2	1.7942	1.9394500000000001	2.0847	0.0378648	0.00719316	0.141212	0.0756118
chr18	687472	687572	6939514	0	-	0.55	(0.515,0.57]	chr18	686403	8	EXON_LNCRNA	EXON_LNCRNA:INTRON	ENOSF1	ENSG00000132199.20	ENST00000647584.2:ENST00000383578.7:ENST00000584259.6:ENST00000340116.12:ENST00000581475.5:ENST00000580982.5:ENST00000585128.6:ENST00000583973.5:ENST00000584453.5:ENST00000578651.5:ENST00000577334.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	48	2	1.44089	1.93936	2.43783	0.0617046	0.00916404	0.193423	0.0812949
chr5	159197794	159197893	2759070	0	-	0.525253	(0.515,0.57]	chr5	260362	26	INTRON	INTRON	RNF145	ENSG00000145860.12	ENST00000424310.7:ENST00000519865.5:ENST00000274542.6:ENST00000611185.4:ENST00000521606.6:ENST00000518802.5:ENST00000520638.1:ENST00000520548.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	48	2	1.44089	1.93936	2.43783	0.0617046	0.00916404	0.193423	0.0812949
chr1	108940898	108940992	518935	0	-	0.255319	[0,0.28]	chr1	60887	9	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	CLCC1	ENSG00000121940.17	ENST00000690509.1:ENST00000687328.1:ENST00000685014.1:ENST00000685540.1:ENST00000686576.1:ENST00000688070.1:ENST00000691513.1:ENST00000686821.1:ENST00000692511.1:ENST00000689479.1:ENST00000687646.1:ENST00000687998.1:ENST00000687226.1:ENST00000693336.1:ENST00000689991.1:ENST00000687591.1:ENST00000691777.1:ENST00000690756.1:ENST00000688778.1:ENST00000685104.1:ENST00000689103.1:ENST00000687734.1:ENST00000686434.1:ENST00000685497.1:ENST00000691342.1:ENST00000686776.1:ENST00000692342.1:ENST00000689351.1:ENST00000692584.1:ENST00000692775.1:ENST00000687134.1:ENST00000690707.1:ENST00000687675.1:ENST00000675018.1:ENST00000690781.1:ENST00000691556.1:ENST00000689189.1:ENST00000687099.1:ENST00000685791.1:ENST00000687865.1:ENST00000687449.1:ENST00000688285.1:ENST00000686817.1:ENST00000369968.7:ENST00000674992.1:ENST00000675001.1:ENST00000369969.7:ENST00000356970.6:ENST00000692184.1:ENST00000482889.2:ENST00000369976.6:ENST00000688610.1:ENST00000675128.1:ENST00000693089.1:ENST00000675571.1:ENST00000675650.1:ENST00000369970.8:ENST00000674561.2:ENST00000675451.1:ENST00000675654.1:ENST00000675790.1:ENST00000675584.1:ENST00000692795.1:ENST00000691731.1:ENST00000689359.1:ENST00000676392.2:ENST00000676391.2:ENST00000676454.1:ENST00000674849.1:ENST00000675956.1:ENST00000302500.5:ENST00000675508.1:ENST00000688168.1:ENST00000693673.1:ENST00000692404.1:ENST00000686078.1:ENST00000690874.1:ENST00000686961.1:ENST00000692732.1:ENST00000685628.1:ENST00000676306.1:ENST00000348264.6:ENST00000675247.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	53	2	1.66929	1.9392800000000001	2.20927	0.0794763	0.0537506	0.19979	0.180803
chr12	53459601	53459699	5142965	0	+	0.27551	[0,0.28]	chr12	485399	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PCBP2	ENSG00000197111.16	ENST00000546463.6:ENST00000437231.5:ENST00000447282.5:ENST00000359282.9:ENST00000549863.5:ENST00000359462.9:ENST00000550520.6:ENST00000552296.6:ENST00000551104.5:ENST00000552819.5:ENST00000455667.7:ENST00000439930.7:ENST00000548933.5:ENST00000546652.6:ENST00000562264.5:ENST00000548190.1:ENST00000550585.5:ENST00000547987.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	142	2	1.89635	1.939265	1.98218	0.0161478	0.00868679	0.101453	0.0843099
chr12	122515826	122515926	5442137	0	-	0.53	(0.515,0.57]	chr12	520568	2	INTRON	INTRON	RSRC2	ENSG00000111011.18	ENST00000331738.12:ENST00000532695.5:ENST00000433877.6:ENST00000527173.6:ENST00000525335.6:ENST00000344591.8:ENST00000528263.1:ENST00000527399.3:ENST00000524399.1:ENST00000527796.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	41	2	1.44237	1.93913	2.43589	0.0456196	0.0370871	0.164236	0.139194
chr20	63604149	63604242	7363084	0	-	0.408602	(0.408,0.44]	chr20	751325	7	INTRON	INTRON	GMEB2	ENSG00000101216.11	ENST00000266068.5:ENST00000370069.5:ENST00000370077.2	protein_coding	protein_coding	protein_coding	protein_coding	8	69	2	1.61024	1.9390800000000001	2.26792	0.0200746	0.0179973	0.121073	0.106756
chr11	66626865	66626964	4810905	0	+	0.454545	(0.44,0.476]	chr11	447878	3	UTR3	UTR3:EXON_MRNA:INTRON	RBM14-RBM4:RBM14	ENSG00000248643.5:ENSG00000239306.5	ENST00000412278.2:ENST00000393979.3:ENST00000511114.1:ENST00000310137.5:ENST00000421355.1:ENST00000500635.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	30	275	2	1.53443	1.93899	2.34355	0.00755514	8.57743e-5	0.0749063	0.00783027
chr16	4881019	4881118	6283653	0	+	0.535354	(0.515,0.57]	chr16	601625	10	UTR3	UTR3:EXON_MRNA	UBN1	ENSG00000118900.15	ENST00000262376.11:ENST00000396658.8	protein_coding	protein_coding	protein_coding	protein_coding	8	66	2	1.89462	1.938955	1.98329	0.0139002	0.0105419	0.10247	0.0860389
chr18	73178560	73178660	6987757	0	-	0.29	(0.28,0.32]	chr18	691698	52	INTRON	INTRON	LINC02864	ENSG00000263711.6	ENST00000584544.5:ENST00000581011.5:ENST00000581862.6:ENST00000669547.1:ENST00000661525.1	lncRNA	lncRNA	lncRNA	lncRNA	6	74	2	1.81582	1.938945	2.06207	0.068122	0.00876132	0.184298	0.0846118
chr2	172579497	172579597	920141	0	+	0.39	(0.378,0.408]	chr2	101374	83	INTRON	INTRON	PDK1	ENSG00000152256.14	ENST00000392571.6:ENST00000410055.5:ENST00000282077.8:ENST00000466437.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	14	125	2	1.59788	1.938915	2.27995	0.00940466	0.00388691	0.0861183	0.0544347
chr18	9175394	9175494	6869317	0	+	0.42	(0.408,0.44]	chr18	680561	372	INTRON	INTRON	ANKRD12	ENSG00000101745.17	ENST00000585234.5:ENST00000262126.9:ENST00000577992.1:ENST00000540578.6:ENST00000581635.5:ENST00000400020.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	42	2	1.43792	1.9389	2.43988	0.062843	0.0398236	0.196433	0.143072
chr19	47147402	47147502	7084038	0	+	0.43	(0.408,0.44]	chr19	708754	34	INTRON	INTRON	SAE1	ENSG00000142230.13	ENST00000594144.5:ENST00000594526.5:ENST00000597808.5:ENST00000413379.7:ENST00000600706.5:ENST00000270225.12:ENST00000598840.5:ENST00000414294.6:ENST00000600753.1:ENST00000660039.1:ENST00000664120.1:ENST00000596995.1:ENST00000392776.3:ENST00000659110.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	42	2	1.43792	1.9389	2.43988	0.062843	0.0398236	0.196433	0.143072
chr7	141739490	141739590	3440109	0	+	0.41	(0.408,0.44]	chr7	320672	4	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	SSBP1	ENSG00000106028.11	ENST00000612337.4:ENST00000265304.11:ENST00000498107.5:ENST00000496622.1:ENST00000489378.5:ENST00000469123.5:ENST00000467681.5:ENST00000465582.5:ENST00000463093.5:ENST00000461433.1:ENST00000465167.1:ENST00000468267.1:ENST00000484178.5:ENST00000473783.5:ENST00000481508.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	11	95	2	1.28292	1.938895	2.59487	0.0429534	0.00202403	0.162255	0.04086
chr6	122511172	122511272	2948063	0	+	0.33	(0.32,0.35]	chr6	277524	178	INTRON	INTRON	PKIB	ENSG00000135549.16	ENST00000615438.4:ENST00000392491.6:ENST00000608895.5:ENST00000618977.4:ENST00000583007.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	48	2	1.88468	1.938875	1.99307	0.0515071	0.04271	0.176696	0.148082
chr12	123209256	123209355	5443819	0	-	0.313131	(0.28,0.32]	chr12	520832	55	INTRON	INTRON	MPHOSPH9	ENSG00000051825.15	ENST00000606320.6:ENST00000541076.6:ENST00000545556.6:ENST00000302373.8:ENST00000539024.5:ENST00000539336.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	96	2	1.84658	1.9388200000000002	2.03106	0.0208123	0.0128582	0.111549	0.0990564
chr1	93347563	93347662	164213	0	+	0.323232	(0.32,0.35]	chr1	17840	3	INTRON	INTRON	DR1	ENSG00000117505.13	ENST00000370272.9:ENST00000370267.1	protein_coding	protein_coding	protein_coding	protein_coding	5	49	2	1.49965	1.938795	2.37794	0.0542985	0.0498601	0.182243	0.156383
chr3	47670580	47670657	1683939	0	-	0.298701	(0.28,0.32]	chr3	172010	4	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	SMARCC1	ENSG00000173473.11	ENST00000254480.10:ENST00000425518.5:ENST00000483847.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	96	2	1.72809	1.938755	2.14942	0.0197186	0.0143412	0.120131	0.0966737
chr20	32361704	32361803	7255852	0	+	0.464646	(0.44,0.476]	chr20	737046	5	INTRON	INTRON	ASXL1	ENSG00000171456.21	ENST00000651418.1:ENST00000375687.10:ENST00000613218.4:ENST00000646367.1:ENST00000644587.1:ENST00000620121.4:ENST00000645337.1:ENST00000649901.1:ENST00000646985.1:ENST00000645035.1:ENST00000497249.6:ENST00000643168.1:ENST00000375689.5:ENST00000306058.9:ENST00000555343.2:ENST00000645688.1:ENST00000642676.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	61	2	1.69402	1.93873	2.18344	0.0456129	0.0102102	0.164236	0.0850389
chr13	79545856	79545955	5516611	0	+	0.525253	(0.515,0.57]	chr13	527539	18	INTRON	INTRON	NDFIP2	ENSG00000102471.15	ENST00000612570.4:ENST00000218652.12:ENST00000650134.1:ENST00000487865.5:ENST00000465762.5:ENST00000620924.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	35	2	1.86007	1.93872	2.01737	0.0526611	0.0352218	0.178401	0.137535
chr5	177551841	177551941	2778417	0	-	0.56	(0.515,0.57]	chr5	261986	4	SS5_PROX	SS5_PROX:INTRON	FAM193B	ENSG00000146067.16	ENST00000514747.6:ENST00000506955.5:ENST00000508298.5:ENST00000510429.1:ENST00000506432.1:ENST00000507587.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	35	2	1.86007	1.93872	2.01737	0.0526611	0.0352218	0.178401	0.137535
chr6	31624522	31624622	2843131	0	+	0.52	(0.515,0.57]	chr6	267591	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	PRRC2A	ENSG00000204469.13	ENST00000376033.3:ENST00000376007.8:ENST00000469577.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	35	2	1.86007	1.93872	2.01737	0.0526611	0.0352218	0.178401	0.137535
chr9	92262556	92262644	4287016	0	-	0.522727	(0.515,0.57]	chr9	394173	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	IARS1	ENSG00000196305.19	ENST00000375643.7:ENST00000443024.7:ENST00000447699.7:ENST00000683537.1:ENST00000684726.1:ENST00000683192.1:ENST00000683565.1:ENST00000682756.1:ENST00000684542.1:ENST00000683793.1:ENST00000683817.1:ENST00000682141.1:ENST00000682893.1:ENST00000684557.1:ENST00000498025.2:ENST00000682156.1:ENST00000627121.3:ENST00000683469.1:ENST00000683495.1:ENST00000682578.1:ENST00000682533.1:ENST00000472894.2:ENST00000684757.1:ENST00000684445.1:ENST00000683376.1:ENST00000683679.1:ENST00000683119.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	35	2	1.86007	1.93872	2.01737	0.0526611	0.0352218	0.178401	0.137535
chr4	159120014	159120113	2073669	0	+	0.464646	(0.44,0.476]	chr4	205172	154	INTRON	INTRON	RAPGEF2	ENSG00000109756.10	ENST00000644474.1:ENST00000691494.1:ENST00000505478.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	50	2	1.66775	1.9386200000000002	2.20949	0.0672585	0.0219883	0.183051	0.123836
chr11	86036104	86036204	5014513	0	-	0.24	[0,0.28]	chr11	473022	41	INTRON	INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000630913.2:ENST00000528398.5:ENST00000356360.9:ENST00000534412.5:ENST00000531558.1:ENST00000531930.5:ENST00000532041.5:ENST00000525162.5:ENST00000528256.1:ENST00000528411.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	62	2	1.60593	1.9385599999999998	2.27119	0.070351	0.0433625	0.184298	0.162255
chr2	167922931	167923031	1259032	0	-	0.42	(0.408,0.44]	chr2	133340	218	INTRON	INTRON	B3GALT1-AS1	ENSG00000235335.3	ENST00000430546.2:ENST00000657553.1:ENST00000670221.1:ENST00000436982.2	lncRNA	lncRNA	lncRNA	lncRNA	13	124	2	1.82508	1.938545	2.05201	0.0063277	0.00399995	0.0722266	0.0551303
chr11	67430382	67430481	4815104	0	+	0.444444	(0.44,0.476]	chr11	448443	9	EXON_MRNA	EXON_MRNA:INTRON	RPS6KB2	ENSG00000175634.15	ENST00000530623.5:ENST00000556575.5:ENST00000312629.10:ENST00000524814.5:ENST00000524934.5:ENST00000420069.3:ENST00000528964.5:ENST00000525088.5:ENST00000525996.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	41	2	1.85146	1.93852	2.02558	0.0545846	0.0363567	0.182529	0.138959
chr2	24808203	24808303	712239	0	+	0.45	(0.44,0.476]	chr2	82368	80	INTRON	INTRON	CENPO	ENSG00000138092.11	ENST00000473706.5:ENST00000491031.5:ENST00000380834.7:ENST00000486527.6:ENST00000260662.2:ENST00000498362.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	41	2	1.85146	1.93852	2.02558	0.0545846	0.0363567	0.182529	0.138959
chr2	171711268	171711368	917947	0	+	0.47	(0.44,0.476]	chr2	101104	35	INTRON	INTRON	DYNC1I2	ENSG00000077380.16	ENST00000340296.8:ENST00000452242.5:ENST00000397119.8:ENST00000410079.7:ENST00000438879.5:ENST00000508530.5:ENST00000409197.5:ENST00000456808.5:ENST00000409317.5:ENST00000409773.5:ENST00000411953.5:ENST00000409453.5:ENST00000445378.5:ENST00000435234.5:ENST00000443458.5:ENST00000412370.5:ENST00000425485.5:ENST00000423910.5:ENST00000430778.5:ENST00000422646.1:ENST00000482454.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	41	2	1.85146	1.93852	2.02558	0.0545846	0.0363567	0.182529	0.138959
chr7	75737800	75737900	3561240	0	-	0.47	(0.44,0.476]	chr7	331788	36	INTRON	INTRON	HIP1	ENSG00000127946.17	ENST00000336926.11:ENST00000434438.6:ENST00000485723.1:ENST00000479835.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	41	2	1.85146	1.93852	2.02558	0.0545846	0.0363567	0.182529	0.138959
chr1	151052148	151052246	553305	0	-	0.408163	(0.378,0.408]	chr1	65158	13	UTR3	UTR3:EXON_MRNA	CDC42SE1	ENSG00000197622.13	ENST00000439374.6:ENST00000540998.5:ENST00000357235.6:ENST00000483763.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	65	2	1.89621	1.938505	1.9808	0.0488044	0.0123757	0.173377	0.0916369
chr16	85582337	85582437	6415655	0	+	0.59	(0.57,1]	chr16	615470	256	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	8	39	2	1.7127	1.9385	2.1643	0.0180739	0.00941704	0.107124	0.0861183
chr3	5146449	5146549	1353817	0	+	0.4	(0.378,0.408]	chr3	142361	175	INTRON	INTRON	ARL8B	ENSG00000134108.14	ENST00000429403.5:ENST00000256496.8:ENST00000455168.5:ENST00000444332.1:ENST00000419534.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	49	2	1.41307	1.9384000000000001	2.46373	0.0510067	0.0382831	0.176593	0.141795
chr18	792841	792940	6940511	0	-	0.373737	(0.35,0.378]	chr18	686525	45	INTRON	INTRON	YES1	ENSG00000176105.14	ENST00000584307.5:ENST00000314574.5:ENST00000577611.1:ENST00000581960.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	61	2	1.7339	1.9382700000000002	2.14264	0.0274795	0.0260366	0.133676	0.123904
chr1	29069682	29069779	60531	0	+	0.556701	(0.515,0.57]	chr1	7745	5	UTR3	UTR3:EXON_MRNA:INTRON	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000647918.1:ENST00000646800.1:ENST00000644342.1:ENST00000646189.1:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000373798.5:ENST00000644600.1:ENST00000649674.1:ENST00000643173.1:ENST00000343067.9:ENST00000644780.1:ENST00000650265.1:ENST00000643604.1:ENST00000349460.9:ENST00000645111.1:ENST00000643302.1:ENST00000636666.1:ENST00000644848.1:ENST00000646871.1:ENST00000488277.1:ENST00000490308.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	23	177	2	1.78576	1.93824	2.09072	0.00176448	0.00104303	0.0389528	0.0293983
chr15	63550019	63550119	6042370	0	+	0.54	(0.515,0.57]	chr15	575406	49	INTRON	INTRON	USP3	ENSG00000140455.17	ENST00000540797.5:ENST00000380324.8:ENST00000561442.5:ENST00000560070.5:ENST00000557884.5:ENST00000558157.5:ENST00000561326.5:ENST00000559873.5:ENST00000559192.5:ENST00000559771.5:ENST00000268049.11:ENST00000558285.5:ENST00000559257.5:ENST00000538686.6:ENST00000559711.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	53	2	1.54678	1.938225	2.32967	0.0324987	0.0133671	0.145164	0.0946278
chr7	105045909	105046009	3374941	0	+	0.3	(0.28,0.32]	chr7	315877	45	INTRON	INTRON	KMT2E	ENSG00000005483.22	ENST00000622386.2:ENST00000257745.9:ENST00000334884.9:ENST00000311117.8:ENST00000478990.5:ENST00000495267.5:ENST00000476671.5:ENST00000667857.1:ENST00000474203.5:ENST00000482560.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	77	2	1.1967	1.938225	2.67975	0.061138	0.0252505	0.193423	0.12011
chr21	34076236	34076336	7401119	0	+	0.34	(0.32,0.35]	chr21	753967	21	INTRON	INTRON	MRPS6:SLC5A3	ENSG00000243927.6:ENSG00000198743.7	ENST00000488492.5:ENST00000477091.5:ENST00000399312.3:ENST00000381151.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	80	2	1.56912	1.938215	2.30731	0.0247709	0.0176772	0.131869	0.10525
chr1	1316753	1316852	359481	0	-	0.525253	(0.515,0.57]	chr1	41630	7	EXON_LNCRNA	EXON_LNCRNA:INTRON	INTS11	ENSG00000127054.22	ENST00000540437.5:ENST00000545578.5:ENST00000620829.4:ENST00000435064.6:ENST00000323275.10:ENST00000411962.5:ENST00000462432.5:ENST00000419704.5:ENST00000458452.7:ENST00000421495.6:ENST00000532772.5:ENST00000450926.6:ENST00000527098.5:ENST00000528879.5:ENST00000531377.5:ENST00000434694.6:ENST00000488042.6:ENST00000526797.5:ENST00000526332.5:ENST00000430786.5:ENST00000527719.5:ENST00000530031.5:ENST00000526113.1:ENST00000526904.5:ENST00000525603.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	80	2	1.51235	1.938175	2.364	0.0176977	0.00447856	0.11319	0.0593175
chr11	68613874	68613968	4818903	0	+	0.276596	[0,0.28]	chr11	449078	9	UTR3	UTR3:EXON_MRNA:INTRON	PPP6R3	ENSG00000110075.15	ENST00000534534.5:ENST00000393800.7:ENST00000265637.8:ENST00000524904.5:ENST00000393801.7:ENST00000265636.9:ENST00000529710.5:ENST00000527403.6:ENST00000526307.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	15	206	2	1.55907	1.9381599999999999	2.31725	0.0234816	0.00145151	0.118716	0.0349797
chr16	30702371	30702470	6338679	0	+	0.515152	(0.476,0.515]	chr16	607723	11	INTRON	INTRON	SRCAP	ENSG00000080603.17	ENST00000411466.6:ENST00000262518.9	protein_coding	protein_coding	protein_coding	protein_coding	6	59	2	1.86014	1.9381599999999999	2.01618	0.0277606	0.0180082	0.137011	0.106756
chr12	56673465	56673565	5335932	0	-	0.39	(0.378,0.408]	chr12	510191	4	SS3_PROX	SS3_PROX:INTRON	PTGES3	ENSG00000110958.16	ENST00000537473.2:ENST00000614328.4:ENST00000262033.11:ENST00000414274.7:ENST00000436399.6:ENST00000448157.6:ENST00000456859.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	70	2	1.86598	1.93809	2.0102	0.0300232	0.00940766	0.129138	0.0861183
chr4	55405432	55405532	1960685	0	+	0.36	(0.35,0.378]	chr4	196553	17	INTRON	INTRON	TMEM165	ENSG00000134851.13	ENST00000381334.10:ENST00000506198.5:ENST00000508404.5:ENST00000511710.1:ENST00000502797.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	15	127	2	1.41057	1.938075	2.46558	0.0168124	0.00387127	0.11068	0.0543569
chr21	9108896	9108996	7426428	0	-	0.32	(0.28,0.32]	chr21	757579	206	INTRON	INTRON	TEKT4P2	ENSG00000188681.12	ENST00000690061.1:ENST00000689141.1:ENST00000688310.1:ENST00000687537.1:ENST00000690096.1:ENST00000687888.1:ENST00000690389.1:ENST00000684989.1:ENST00000416067.6:ENST00000693307.1:ENST00000692383.1:ENST00000685666.1:ENST00000688451.1:ENST00000691190.1:ENST00000685532.1:ENST00000687488.1:ENST00000690713.1:ENST00000691834.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	7	87	2	1.7305	1.93792	2.14534	0.0327022	0.0117054	0.133816	0.0962115
chr3	9994430	9994530	1362046	0	+	0.4	(0.378,0.408]	chr3	143402	2	INTRON	INTRON	EMC3-AS1	ENSG00000180385.9	ENST00000692142.1:ENST00000366264.6:ENST00000693066.1:ENST00000326237.3:ENST00000440568.1:ENST00000424904.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	4	43	2	1.81685	1.93791	2.05897	0.0597868	0.0339294	0.189982	0.134508
chr17	17230815	17230910	6736008	0	-	0.473684	(0.44,0.476]	chr17	660923	15	INTRON	INTRON	FLCN	ENSG00000154803.13	ENST00000285071.9:ENST00000389169.9:ENST00000417064.1:ENST00000389171.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	62	2	1.58453	1.937895	2.29126	0.0293513	0.0165638	0.142102	0.102621
chr11	8684446	8684536	4728998	0	+	0.444444	(0.44,0.476]	chr11	437768	2	UTR5	UTR5:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPL27A	ENSG00000166441.13	ENST00000531978.5:ENST00000530585.5:ENST00000524496.5:ENST00000314138.11:ENST00000532359.5:ENST00000534599.5:ENST00000530022.5:ENST00000526562.5:ENST00000525981.1:ENST00000530913.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	89	2	1.84134	1.937885	2.03443	0.0175428	0.00616397	0.11319	0.067653
chr12	132824039	132824134	5450174	0	-	0.473684	(0.44,0.476]	chr12	522111	14	INTRON	INTRON	GOLGA3:CHFR	ENSG00000090615.16:ENSG00000072609.18	ENST00000204726.9:ENST00000450791.8:ENST00000688114.1:ENST00000691696.1:ENST00000691636.1:ENST00000690897.1:ENST00000456883.7:ENST00000545875.4:ENST00000688251.1:ENST00000686751.1:ENST00000685580.1:ENST00000687165.1:ENST00000692384.1:ENST00000685120.1:ENST00000689813.1:ENST00000693112.1:ENST00000685450.1:ENST00000534967.2:ENST00000537317.2:ENST00000690178.1:ENST00000652603.2:ENST00000541341.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	19	171	2	1.78619	1.93787	2.08955	0.00273382	0.00238917	0.0483437	0.0440511
chr3	101368311	101368411	1757121	0	-	0.33	(0.32,0.35]	chr3	178304	3	SS3_PROX	SS3_PROX:INTRON	SENP7	ENSG00000138468.16	ENST00000394095.7:ENST00000314261.11:ENST00000394094.6:ENST00000394091.5:ENST00000348610.3	protein_coding	protein_coding	protein_coding	protein_coding	7	73	2	1.37958	1.93784	2.4961	0.0577841	0.00967886	0.188484	0.0828038
chr1	23034625	23034725	43910	0	+	0.33	(0.32,0.35]	chr1	5258	36	INTRON	INTRON	KDM1A	ENSG00000004487.18	ENST00000692214.1:ENST00000686934.1:ENST00000689853.1:ENST00000465864.2:ENST00000691256.1:ENST00000688122.1:ENST00000692056.1:ENST00000692853.1:ENST00000689366.1:ENST00000686270.1:ENST00000685102.1:ENST00000690627.1:ENST00000686771.1:ENST00000692209.1:ENST00000686339.1:ENST00000691813.1:ENST00000693156.1:ENST00000688235.1:ENST00000692975.1:ENST00000687202.1:ENST00000691682.1:ENST00000691404.1:ENST00000691694.1:ENST00000688680.1:ENST00000356634.7:ENST00000400181.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	57	2	1.88255	1.9378099999999998	1.99307	0.04271	0.0269187	0.148082	0.135288
chr7	111429481	111429581	3622781	0	-	0.33	(0.32,0.35]	chr7	337108	367	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000452895.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding	7	79	2	1.53859	1.9377849999999999	2.33698	0.0534261	0.00536261	0.162935	0.0663076
chr17	1678268	1678342	6701481	0	-	0.418919	(0.408,0.44]	chr17	656060	2	SS5_PROX	SS5_PROX:INTRON	PRPF8	ENSG00000174231.17	ENST00000304992.11:ENST00000572621.5:ENST00000577001.1	protein_coding	protein_coding	protein_coding	protein_coding	9	87	2	1.69979	1.93778	2.17577	0.0310346	0.00269594	0.13151	0.0479115
chr14	102647306	102647406	5823080	0	+	0.51	(0.476,0.515]	chr14	552490	536	INTRON	INTRON	RCOR1	ENSG00000089902.10	ENST00000262241.7	protein_coding	protein_coding	protein_coding	protein_coding	5	49	2	1.7425	1.93777	2.13304	0.0417334	0.024866	0.147007	0.132101
chr8	129517785	129517885	4060460	0	-	0.48	(0.476,0.515]	chr8	369648	72	INTRON	INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1:ENST00000676273.1:ENST00000667643.1:ENST00000668791.1:ENST00000663716.1:ENST00000663572.1:ENST00000676148.1:ENST00000667962.1:ENST00000674877.1:ENST00000675316.1:ENST00000674656.1:ENST00000446592.7:ENST00000667341.1:ENST00000675186.1:ENST00000652971.1:ENST00000661447.1:ENST00000674863.1:ENST00000675498.1:ENST00000675527.1:ENST00000676108.1:ENST00000657647.1:ENST00000675589.1:ENST00000675913.1:ENST00000675109.1:ENST00000671632.1:ENST00000671311.1:ENST00000676099.1:ENST00000660652.1:ENST00000675522.1:ENST00000675183.1:ENST00000658861.1:ENST00000663991.1:ENST00000675044.1:ENST00000675435.1:ENST00000674639.1:ENST00000676069.1:ENST00000675532.1:ENST00000674762.1:ENST00000523151.6:ENST00000675948.1:ENST00000665364.1:ENST00000657251.1:ENST00000675166.1:ENST00000674883.1:ENST00000675867.1:ENST00000674580.1:ENST00000675393.1:ENST00000520048.1:ENST00000674906.1:ENST00000676030.1:ENST00000670588.1:ENST00000675072.1:ENST00000664936.1:ENST00000652914.1:ENST00000657069.1	lncRNA	lncRNA	lncRNA	lncRNA	5	49	2	1.7425	1.93777	2.13304	0.0417334	0.024866	0.147007	0.132101
chr2	177261804	177261904	1275818	0	-	0.38	(0.378,0.408]	chr2	134708	272	INTRON	INTRON	NFE2L2	ENSG00000116044.16	ENST00000397063.8:ENST00000464747.5:ENST00000397062.8:ENST00000446151.6:ENST00000449627.1:ENST00000448782.5:ENST00000430047.1:ENST00000586532.5:ENST00000421929.5:ENST00000423513.5:ENST00000588123.1:ENST00000477534.1:ENST00000462023.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	11	86	2	1.2091	1.9377650000000002	2.66643	0.0486002	0.00470023	0.172998	0.0600108
chr1	35384841	35384941	69462	0	+	0.48	(0.476,0.515]	chr1	8769	27	INTRON	INTRON	ZMYM4	ENSG00000146463.12	ENST00000314607.11:ENST00000457946.1	protein_coding	protein_coding	protein_coding	protein_coding	10	93	2	1.59633	1.937765	2.2792	0.0233044	0.00299196	0.118272	0.0503888
chr6	4783705	4783805	2790935	0	+	0.45	(0.44,0.476]	chr6	263598	65	INTRON	INTRON	CDYL	ENSG00000153046.18	ENST00000328908.9:ENST00000491864.1:ENST00000440139.5:ENST00000483019.1:ENST00000397588.8:ENST00000472453.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	62	2	1.40212	1.9377550000000001	2.47339	0.0524678	0.0090196	0.178047	0.080367
chr1	176079952	176080052	590428	0	-	0.37	(0.35,0.378]	chr1	70908	333	INTRON	INTRON	COP1	ENSG00000143207.21	ENST00000367669.8:ENST00000367667.5:ENST00000461830.6:ENST00000367666.5:ENST00000649803.1:ENST00000308769.12:ENST00000459744.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	116	2	1.89818	1.937735	1.97729	0.00841104	0.00688871	0.0776588	0.0750118
chr1	31003564	31003663	412269	0	-	0.484848	(0.476,0.515]	chr1	49713	80	INTRON	INTRON	PUM1	ENSG00000134644.16	ENST00000426105.7:ENST00000373747.7:ENST00000257075.9:ENST00000424085.6:ENST00000525843.5:ENST00000440538.6:ENST00000373741.8:ENST00000373742.6:ENST00000526215.5:ENST00000525948.5:ENST00000480602.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	13	113	2	1.46117	1.93771	2.41425	0.0192975	0.00197914	0.119831	0.0404068
chr1	203021148	203021248	295394	0	+	0.48	(0.476,0.515]	chr1	33977	2	SS5_PROX	SS5_PROX:INTRON	TMEM183A	ENSG00000163444.12	ENST00000367242.4	protein_coding	protein_coding	protein_coding	protein_coding	9	87	2	1.63187	1.9376950000000002	2.24352	0.037661	0.0019689	0.14058	0.0411469
chr3	149083835	149083921	1840974	0	-	0.534884	(0.515,0.57]	chr3	185200	1	SS3_PROX	SS3_PROX:INTRON	HLTF	ENSG00000071794.16	ENST00000310053.10:ENST00000465259.5:ENST00000392912.6:ENST00000494055.5:ENST00000481663.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	42	2	1.8707	1.93769	2.00468	0.0523213	0.0166344	0.160182	0.110511
chr6	147221058	147221158	2988874	0	+	0.3	(0.28,0.32]	chr6	280001	146	INTRON	INTRON	STXBP5	ENSG00000164506.15	ENST00000321680.11:ENST00000367481.7:ENST00000546097.5:ENST00000367480.7	protein_coding	protein_coding	protein_coding	protein_coding	8	97	2	1.56481	1.93768	2.31055	0.0339805	0.00834688	0.146815	0.0774402
chr11	70416315	70416413	4821800	0	+	0.540816	(0.515,0.57]	chr11	449628	2	INTRON	INTRON	CTTN	ENSG00000085733.16	ENST00000346329.7:ENST00000301843.13:ENST00000376561.7:ENST00000415461.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	64	2	1.33814	1.937595	2.53705	0.063703	0.00186194	0.177689	0.039946
chr12	91571045	91571145	5384927	0	-	0.43	(0.408,0.44]	chr12	513485	638	INTRON	INTRON	ENSG00000289605	ENSG00000289605.1	ENST00000685093.1	lncRNA	lncRNA	lncRNA	lncRNA	4	41	2	1.93243	1.93758	1.94273	0.0456237	0.0441194	0.162255	0.149888
chr3	196074433	196074533	1897478	0	-	0.35	(0.32,0.35]	chr3	189976	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	TFRC	ENSG00000072274.13	ENST00000420415.5:ENST00000360110.9:ENST00000392396.7:ENST00000421258.1:ENST00000464011.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	20	217	2	1.29133	1.9375	2.58367	0.0344078	1.02414e-4	0.136035	0.00855883
chr17	35601271	35601371	6599677	0	+	0.3	(0.28,0.32]	chr17	642244	2	SS5_PROX	SS5_PROX:INTRON	AP2B1	ENSG00000006125.18	ENST00000589774.5:ENST00000616784.4:ENST00000621914.4:ENST00000620039.4:ENST00000616681.4:ENST00000621668.4:ENST00000610402.5:ENST00000612035.4:ENST00000591610.5:ENST00000590538.5:ENST00000614600.4:ENST00000590432.5:ENST00000612116.5:ENST00000618940.4:ENST00000592167.5:ENST00000593014.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	110	2	1.92947	1.9374850000000001	1.9455	0.016777	0.00937907	0.103294	0.0860074
chr2	113894057	113894157	854283	0	+	0.38	(0.378,0.408]	chr2	95895	29	INTRON	INTRON	ACTR3	ENSG00000115091.12	ENST00000443297.5:ENST00000263238.7:ENST00000415792.5:ENST00000446821.5:ENST00000535589.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	14	138	2	1.91522	1.9374799999999999	1.95974	0.00561638	0.0034794	0.0653868	0.0541004
chr7	92252515	92252615	3352857	0	+	0.39	(0.378,0.408]	chr7	312479	56	INTRON	INTRON	ANKIB1	ENSG00000001629.10	ENST00000265742.8	protein_coding	protein_coding	protein_coding	protein_coding	5	44	2	1.5653	1.937455	2.30961	0.055088	0.043739	0.165463	0.162255
chr22	16602715	16602814	7473367	0	+	0.414141	(0.408,0.44]	chr22	761972	1	INTRON	INTRON	TPTEP1:ENSG00000283633	ENSG00000100181.22:ENSG00000283633.1	ENST00000558085.6:ENST00000400593.6:ENST00000592918.5:ENST00000592107.5:ENST00000426585.5:ENST00000591299.1	lncRNA	lncRNA	lncRNA:transcribed_unprocessed_pseudogene	lncRNA:processed_transcript	20	190	2	1.34208	1.937335	2.53259	0.0274349	6.88123e-5	0.123904	0.00687928
chr17	22098502	22098602	6578648	0	+	0.27	[0,0.28]	chr17	639556	72	INTRON	INTRON	UBBP4	ENSG00000263563.7	ENST00000648259.1:ENST00000688301.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	7	99	2	1.90035	1.9373049999999998	1.97426	0.0275926	0.0173564	0.123904	0.112318
chr7	30499238	30499338	3512576	0	-	0.52	(0.515,0.57]	chr7	327517	3	SS3_PROX	SS3_PROX:INTRON	GGCT	ENSG00000006625.18	ENST00000275428.9:ENST00000440082.5:ENST00000005374.10:ENST00000409144.5:ENST00000426081.5:ENST00000447901.1:ENST00000409390.5:ENST00000409436.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	42	2	1.60221	1.937295	2.27238	0.0581855	0.0161808	0.188704	0.101453
chr1	95148701	95148791	166883	0	+	0.411111	(0.408,0.44]	chr1	18117	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TLCD4:TLCD4-RWDD3	ENSG00000152078.10:ENSG00000271092.5	ENST00000370203.9:ENST00000456991.5:ENST00000604534.5:ENST00000455656.1:ENST00000463375.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	89	2	1.64062	1.9372850000000001	2.23395	0.0557275	0.001262	0.165463	0.0329641
chr19	21450466	21450564	7158708	0	-	0.295918	(0.28,0.32]	chr19	723691	7	INTRON	INTRON	ENSG00000268119	ENSG00000268119.7	ENST00000596705.5:ENST00000597444.6	lncRNA	lncRNA	lncRNA	lncRNA	11	134	2	1.69879	1.9372600000000002	2.17573	0.0205261	0.00339266	0.110999	0.0536193
chr10	27513001	27513093	4413458	0	+	0.358696	(0.35,0.378]	chr10	407064	8	INTRON	INTRON	RAB18	ENSG00000099246.18	ENST00000682082.1:ENST00000611151.5:ENST00000621805.5:ENST00000535776.6:ENST00000684501.1:ENST00000683042.1:ENST00000683797.1:ENST00000682518.1:ENST00000356940.11:ENST00000682852.1:ENST00000683419.1:ENST00000683816.1:ENST00000682389.1:ENST00000684393.1:ENST00000682368.1:ENST00000683755.1:ENST00000682181.1:ENST00000682963.1:ENST00000375802.7:ENST00000465772.5:ENST00000682668.1:ENST00000683538.1:ENST00000423465.2:ENST00000682173.1:ENST00000682138.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	64	2	1.75561	1.93725	2.11889	0.0739399	0.00625927	0.190914	0.0720609
chr2	215347652	215347746	1014289	0	+	0.340426	(0.32,0.35]	chr2	107900	1	INTRON	INTRON	ATIC	ENSG00000138363.15	ENST00000236959.14:ENST00000443953.5:ENST00000435675.5:ENST00000426233.1:ENST00000479093.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	69	2	1.64769	1.9371200000000002	2.22655	0.0578603	0.00823133	0.167723	0.0812969
chr4	55422618	55422717	1960866	0	+	0.444444	(0.44,0.476]	chr4	196577	41	INTRON	INTRON	TMEM165	ENSG00000134851.13	ENST00000381334.10:ENST00000506198.5:ENST00000508404.5:ENST00000514904.5:ENST00000508561.5:ENST00000608091.1:ENST00000509575.1:ENST00000506103.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	67	2	1.88483	1.9371049999999999	1.98938	0.0198602	0.0149825	0.109608	0.107704
chr5	65932901	65933000	2370907	0	+	0.454545	(0.44,0.476]	chr5	228472	57	INTRON	INTRON	ERBIN	ENSG00000112851.15	ENST00000380943.6:ENST00000507490.1:ENST00000416865.6:ENST00000380935.5:ENST00000284037.10:ENST00000380938.6:ENST00000511297.5:ENST00000506030.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	20	183	2	1.92101	1.93706	1.95311	0.00398228	0.00111368	0.0549449	0.0305933
chr2	47894807	47894906	1116007	0	-	0.343434	(0.32,0.35]	chr2	119694	62	INTRON	INTRON	FBXO11	ENSG00000138081.22	ENST00000684712.1:ENST00000682451.1:ENST00000403359.8:ENST00000683894.1:ENST00000681999.1:ENST00000682975.1:ENST00000684085.1:ENST00000492225.5:ENST00000424163.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	69	2	1.8526	1.9369649999999998	2.02133	0.0332438	0.017146	0.134145	0.111072
chr6	31817682	31817770	2843797	0	+	0.386364	(0.378,0.408]	chr6	267896	1	UTR3	UTR3:EXON_MRNA	HSPA1A	ENSG00000204389.10	ENST00000608703.1:ENST00000375651.7	protein_coding	protein_coding	protein_coding	protein_coding	26	250	2	1.69986	1.9369049999999999	2.17395	0.00447746	3.95035e-4	0.0593175	0.0178567
chr5	65556234	65556332	2634225	0	-	0.408163	(0.378,0.408]	chr5	250195	9	INTRON	INTRON	CENPK	ENSG00000123219.13	ENST00000514814.5:ENST00000396679.6:ENST00000508421.5:ENST00000510693.5:ENST00000506282.6:ENST00000505960.5:ENST00000515497.5:ENST00000515873.5:ENST00000510768.5:ENST00000510354.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	15	147	2	1.80144	1.93681	2.07218	0.00720085	0.00201197	0.0727625	0.0414778
chr15	63821727	63821827	6200783	0	-	0.29	(0.28,0.32]	chr15	591445	408	INTRON	INTRON	HERC1	ENSG00000103657.14	ENST00000443617.7:ENST00000561400.1:ENST00000559886.1:ENST00000558532.1:ENST00000560462.1:ENST00000560316.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	99	2	1.842	1.93676	2.03152	0.023346	0.00983556	0.118323	0.0877296
chr19	973058	973157	6992971	0	+	0.474747	(0.44,0.476]	chr19	692440	11	UTR3	UTR3:EXON_MRNA	ARID3A	ENSG00000116017.11	ENST00000263620.8	protein_coding	protein_coding	protein_coding	protein_coding	47	433	2	1.83343	1.9365999999999999	2.03977	0.00107505	2.08096e-4	0.0301825	0.0125878
chr7	129627482	129627582	3412279	0	+	0.39	(0.378,0.408]	chr7	319009	153	INTRON	INTRON	NRF1	ENSG00000106459.15	ENST00000393232.6:ENST00000477428.5:ENST00000454688.5:ENST00000223190.8:ENST00000311967.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	60	2	1.8252	1.9365899999999998	2.04798	0.0619563	0.00809949	0.174514	0.0808864
chr19	972959	973058	6992970	0	+	0.626263	(0.57,1]	chr19	692440	10	UTR3	UTR3:EXON_MRNA	ARID3A	ENSG00000116017.11	ENST00000263620.8	protein_coding	protein_coding	protein_coding	protein_coding	10	48	2	1.64944	1.93655	2.22366	0.016446	0.00344378	0.102201	0.0539802
chr6	26278283	26278380	3071069	0	-	0.463918	(0.44,0.476]	chr6	285462	8	UTR3	UTR3:EXON_MRNA	H4C8	ENSG00000158406.6	ENST00000634956.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	8	75	2	1.58453	1.9364999999999999	2.28847	0.0293513	0.00692113	0.142102	0.0718189
chr14	21264932	21265030	5835123	0	-	0.5	(0.476,0.515]	chr14	554468	25	UTR5	UTR5:EXON_MRNA:INTRON	HNRNPC	ENSG00000092199.19	ENST00000336053.10:ENST00000553300.6:ENST00000554969.5:ENST00000556142.5:ENST00000554455.5:ENST00000430246.6:ENST00000553753.5:ENST00000555309.5:ENST00000555914.5:ENST00000557442.5:ENST00000556628.5:ENST00000556513.5:ENST00000555883.5:ENST00000557201.5:ENST00000420743.6:ENST00000554539.5:ENST00000554383.5:ENST00000555215.5:ENST00000555137.5:ENST00000554891.5:ENST00000556226.5:ENST00000555176.5:ENST00000553614.5:ENST00000557336.1:ENST00000557768.1:ENST00000557033.1:ENST00000555127.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	27	247	2	1.69644	1.936485	2.17653	0.00401606	3.07144e-4	0.0552299	0.0156703
chr11	46761184	46761284	4947869	0	-	0.4	(0.378,0.408]	chr11	463676	4	SS3_PROX	SS3_PROX:INTRON	CKAP5	ENSG00000175216.15	ENST00000529230.6:ENST00000312055.9:ENST00000354558.7:ENST00000533413.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	51	2	1.63458	1.936445	2.23831	0.0573057	0.0179575	0.167723	0.114265
chr14	102611418	102611518	5822721	0	+	0.37	(0.35,0.378]	chr14	552490	177	INTRON	INTRON	RCOR1	ENSG00000089902.10	ENST00000262241.7	protein_coding	protein_coding	protein_coding	protein_coding	8	83	2	1.83633	1.9364400000000002	2.03655	0.0335602	0.00535994	0.134145	0.0663076
chrX	136939339	136939439	7727763	0	+	0.52	(0.515,0.57]	chrX	790772	136	INTRON	INTRON	TM9SF5P	ENSG00000234062.9	ENST00000650669.2:ENST00000687469.1:ENST00000431464.6:ENST00000685550.1:ENST00000685929.1:ENST00000424306.5:ENST00000687978.1:ENST00000688713.1:ENST00000693626.1:ENST00000686432.1:ENST00000693698.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	10	75	2	1.2959	1.9364350000000001	2.57697	0.0487278	0.00153959	0.154287	0.0362709
chr8	125018630	125018727	3853433	0	+	0.371134	(0.35,0.378]	chr8	355174	1	CDS	CDS:EXON_MRNA	SQLE	ENSG00000104549.12	ENST00000523430.5:ENST00000265896.10:ENST00000518931.1:ENST00000518604.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	70	2	1.88357	1.93643	1.98929	0.0417909	0.0100866	0.147075	0.0884696
chr5	157853431	157853531	2758598	0	-	0.44	(0.408,0.44]	chr5	260304	355	INTRON	INTRON	CLINT1	ENSG00000113282.14	ENST00000523094.5:ENST00000411809.7:ENST00000530742.5:ENST00000523908.5	protein_coding	protein_coding	protein_coding	protein_coding	5	49	2	1.93002	1.936375	1.94273	0.0456237	0.022095	0.149888	0.123903
chr1	162570420	162570519	238407	0	+	0.333333	(0.32,0.35]	chr1	28704	37	INTRON	INTRON	UAP1	ENSG00000117143.14	ENST00000367925.6:ENST00000367926.9	protein_coding	protein_coding	protein_coding	protein_coding	5	58	2	1.73318	1.936315	2.13945	0.0462868	0.0254517	0.150684	0.133676
chr2	177259111	177259211	1275791	0	-	0.48	(0.476,0.515]	chr2	134708	245	INTRON	INTRON	NFE2L2	ENSG00000116044.16	ENST00000397063.8:ENST00000464747.5:ENST00000397062.8:ENST00000446151.6:ENST00000449627.1:ENST00000448782.5:ENST00000430047.1:ENST00000586532.5:ENST00000421929.5:ENST00000423513.5:ENST00000588123.1:ENST00000477534.1:ENST00000462023.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	67	2	1.73688	1.936305	2.13573	0.0252731	0.0119549	0.133676	0.0899583
chr6	75647137	75647230	2905407	0	+	0.365591	(0.35,0.378]	chr6	274524	3	SS5_PROX	SS5_PROX:INTRON	SENP6	ENSG00000112701.18	ENST00000370010.6:ENST00000447266.7:ENST00000327284.12:ENST00000483859.6:ENST00000424947.6:ENST00000436928.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	123	2	1.62064	1.93627	2.2519	0.0187402	0.0020199	0.108861	0.0416115
chr16	85567552	85567652	6415507	0	+	0.62	(0.57,1]	chr16	615470	108	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	9	44	2	1.80424	1.936235	2.06823	0.0129439	0.00680672	0.0991015	0.0711884
chrX	47177559	47177654	7655407	0	+	0.421053	(0.408,0.44]	chrX	783116	6	INTRON	INTRON	RBM10	ENSG00000182872.16	ENST00000377604.8:ENST00000345781.10:ENST00000628161.2:ENST00000329236.8:ENST00000496012.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	49	2	1.75791	1.9361899999999999	2.11447	0.0378795	0.0285207	0.157034	0.12666
chr1	22096090	22096189	42653	0	+	0.484848	(0.476,0.515]	chr1	5130	47	UTR3	UTR3:EXON_MRNA	CDC42	ENSG00000070831.18	ENST00000656825.1	protein_coding	protein_coding	protein_coding	protein_coding	5	46	2	1.58972	1.9361799999999998	2.28264	0.0534132	0.0427022	0.179876	0.148082
chr5	151776923	151777018	2521843	0	+	0.326316	(0.32,0.35]	chr5	241284	19	INTRON	INTRON	G3BP1	ENSG00000145907.16	ENST00000523519.5:ENST00000520578.6:ENST00000627077.2:ENST00000678976.1:ENST00000677408.1:ENST00000678070.1:ENST00000678964.1:ENST00000678925.1:ENST00000394123.7:ENST00000676978.1:ENST00000679289.1:ENST00000677493.1:ENST00000676644.1:ENST00000677757.1:ENST00000522761.6:ENST00000677909.1:ENST00000676827.1:ENST00000520177.6:ENST00000676634.1:ENST00000678854.1:ENST00000677602.1:ENST00000519832.1:ENST00000518726.5:ENST00000676911.1:ENST00000356245.8:ENST00000678646.1:ENST00000677381.1:ENST00000678904.1:ENST00000678910.1:ENST00000678101.1:ENST00000677105.1:ENST00000676813.1:ENST00000522367.6:ENST00000517947.5:ENST00000507878.7:ENST00000520006.2:ENST00000678369.1:ENST00000677433.1:ENST00000678564.1:ENST00000677252.1:ENST00000677369.1:ENST00000677284.1:ENST00000676894.1:ENST00000677923.1:ENST00000677323.1:ENST00000522666.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	57	2	1.93031	1.936165	1.94202	0.0486128	0.0231421	0.153946	0.126939
chr6	159728501	159728600	3022398	0	+	0.323232	(0.32,0.35]	chr6	281890	4	INTRON	INTRON	WTAP	ENSG00000146457.16	ENST00000358372.8:ENST00000650096.1:ENST00000614346.4:ENST00000621533.5:ENST00000494513.1:ENST00000631126.2:ENST00000337387.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	57	2	1.93031	1.936165	1.94202	0.0486128	0.0231421	0.153946	0.126939
chr16	88876493	88876589	6540277	0	-	0.354167	(0.35,0.378]	chr16	634026	18	UTR3	UTR3:EXON_MRNA	CBFA2T3	ENSG00000129993.15	ENST00000268679.9:ENST00000327483.9:ENST00000563856.1:ENST00000563920.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	40	2	1.71046	1.93608	2.1617	0.0771502	0.0441269	0.196285	0.162255
chr3	47902649	47902749	1685621	0	-	0.4	(0.378,0.408]	chr3	172202	3	SS5_PROX	SS5_PROX:INTRON	MAP4	ENSG00000047849.22	ENST00000429422.5:ENST00000683076.1:ENST00000395734.7:ENST00000426837.6:ENST00000360240.10:ENST00000383736.3:ENST00000482752.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	58	2	1.76	1.9359700000000002	2.11194	0.0292534	0.023484	0.128531	0.128055
chr10	70422444	70422543	4447260	0	+	0.424242	(0.408,0.44]	chr10	410355	8	UTR3	UTR3:EXON_MRNA	EIF4EBP2	ENSG00000148730.7	ENST00000373218.5	protein_coding	protein_coding	protein_coding	protein_coding	24	230	2	1.64282	1.9358549999999999	2.22889	0.00491771	4.6865e-4	0.0644935	0.0200452
chr21	44867331	44867429	7469064	0	-	0.55102	(0.515,0.57]	chr21	761251	13	INTRON	INTRON	PTTG1IP	ENSG00000183255.12	ENST00000397887.7:ENST00000445724.3:ENST00000330938.8:ENST00000494690.5:ENST00000480234.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	16	127	2	1.83788	1.9358	2.03372	0.00476626	0.00152254	0.0602209	0.0360297
chr7	148874348	148874447	3670664	0	-	0.363636	(0.35,0.378]	chr7	340632	31	INTRON	INTRON	EZH2	ENSG00000106462.12	ENST00000683292.1:ENST00000320356.7:ENST00000492143.5:ENST00000478654.5:ENST00000350995.6:ENST00000460911.5:ENST00000683744.1:ENST00000682317.1:ENST00000682263.1:ENST00000476773.5:ENST00000483967.5:ENST00000498186.5:ENST00000483012.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	21	214	2	1.70418	1.93574	2.1673	0.00717592	5.63905e-4	0.0725212	0.021704
chr2	167880663	167880763	1258608	0	-	0.4	(0.378,0.408]	chr2	133334	103	INTRON	INTRON	B3GALT1-AS1	ENSG00000235335.3	ENST00000430546.2:ENST00000657553.1:ENST00000670221.1:ENST00000436982.2	lncRNA	lncRNA	lncRNA	lncRNA	5	51	2	1.8252	1.9357099999999998	2.04622	0.0619563	0.0149927	0.174514	0.107704
chr20	35736567	35736641	7336499	0	-	0.324324	(0.32,0.35]	chr20	747492	1	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	RBM39	ENSG00000131051.24	ENST00000253363.11:ENST00000639702.1:ENST00000656873.1:ENST00000463004.5:ENST00000361162.10:ENST00000461283.5:ENST00000403542.6:ENST00000338163.10:ENST00000528062.7:ENST00000429968.5:ENST00000444878.5:ENST00000665058.1:ENST00000374038.7:ENST00000412738.5:ENST00000434927.5:ENST00000425184.5:ENST00000481037.5:ENST00000455343.5:ENST00000416108.5:ENST00000426951.5:ENST00000477334.1:ENST00000442447.5:ENST00000449489.5:ENST00000433027.5:ENST00000487604.1:ENST00000453310.5:ENST00000498280.1:ENST00000416529.5:ENST00000397370.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	105	2	1.46414	1.93553	2.40692	0.065059	0.00103155	0.179599	0.0294094
chr1	54381685	54381785	463514	0	-	0.52	(0.515,0.57]	chr1	55784	250	INTRON	INTRON	SSBP3	ENSG00000157216.16	ENST00000610401.5:ENST00000357475.9:ENST00000371319.8:ENST00000417664.7:ENST00000533946.6:ENST00000371320.8:ENST00000525990.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	50	2	1.75372	1.9354799999999999	2.11724	0.0386904	0.0110335	0.14279	0.0927187
chr17	37317352	37317452	6762149	0	-	0.54	(0.515,0.57]	chr17	664944	177	INTRON	INTRON	ACACA	ENSG00000278540.5	ENST00000616317.5:ENST00000614428.4:ENST00000613146.4:ENST00000615229.4:ENST00000621960.1:ENST00000617548.1:ENST00000616352.4:ENST00000614789.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	50	2	1.75372	1.9354799999999999	2.11724	0.0386904	0.0110335	0.14279	0.0927187
chr10	70424236	70424336	4447278	0	+	0.45	(0.44,0.476]	chr10	410355	26	UTR3	UTR3:EXON_MRNA	EIF4EBP2	ENSG00000148730.7	ENST00000373218.5	protein_coding	protein_coding	protein_coding	protein_coding	5	49	2	1.62896	1.935425	2.24189	0.0546679	0.0193405	0.182674	0.108861
chr8	37867061	37867160	3935614	0	-	0.464646	(0.44,0.476]	chr8	360553	36	INTRON	INTRON	RAB11FIP1	ENSG00000156675.16	ENST00000330843.9:ENST00000287263.8:ENST00000522727.5:ENST00000523182.5:ENST00000522774.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	49	2	1.62896	1.935425	2.24189	0.0546679	0.0193405	0.182674	0.108861
chr2	20323884	20323982	1076511	0	-	0.244898	[0,0.28]	chr2	115021	49	INTRON	INTRON	PUM2	ENSG00000055917.16	ENST00000338086.9:ENST00000361078.7:ENST00000442400.5:ENST00000420234.5:ENST00000429419.6:ENST00000432105.5:ENST00000446940.5:ENST00000424110.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	84	2	1.85666	1.9353850000000001	2.01411	0.0660997	0.0117032	0.181924	0.0962115
chr19	28507733	28507833	7166172	0	-	0.45	(0.44,0.476]	chr19	724189	395	INTRON	INTRON	ENSG00000283403:ENSG00000267243	ENSG00000283403.1:ENSG00000267243.6	ENST00000592347.5:ENST00000593065.5	lncRNA	lncRNA	lncRNA	lncRNA	25	227	2	1.72225	1.9353699999999998	2.14849	0.0026073	8.44064e-4	0.0470772	0.0267232
chr12	24945430	24945526	5297876	0	-	0.354167	(0.35,0.378]	chr12	503885	1	EXON_LNCRNA	EXON_LNCRNA:INTRON	BCAT1	ENSG00000060982.15	ENST00000261192.12:ENST00000342945.9:ENST00000539780.5:ENST00000546285.1:ENST00000355164.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	61	2	1.77736	1.9353349999999998	2.09331	0.0315717	0.0225073	0.13151	0.124921
chr13	25308292	25308370	5457236	0	+	0.358974	(0.35,0.378]	chr13	522882	3	SS5_PROX	SS5_PROX:INTRON	NUP58	ENSG00000139496.17	ENST00000481980.2:ENST00000490231.6:ENST00000695571.1:ENST00000477876.2:ENST00000695572.1:ENST00000463407.6:ENST00000695573.1:ENST00000381736.8:ENST00000695583.1:ENST00000465068.5:ENST00000460326.5:ENST00000466694.6:ENST00000381718.8:ENST00000695575.1:ENST00000695574.1:ENST00000495460.2:ENST00000381747.7:ENST00000695576.1:ENST00000394327.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	61	2	1.77736	1.9353349999999998	2.09331	0.0315717	0.0225073	0.13151	0.124921
chr16	30284089	30284189	6472844	0	-	0.38	(0.378,0.408]	chr16	625646	20	INTRON	INTRON	SMG1P5	ENSG00000183604.15	ENST00000529428.5	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	5	51	2	1.65821	1.935295	2.21238	0.0506302	0.0218124	0.17547	0.11491
chr6	135196317	135196409	2962308	0	+	0.336957	(0.32,0.35]	chr6	278610	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MYB	ENSG00000118513.20	ENST00000341911.10:ENST00000442647.7:ENST00000316528.12:ENST00000616088.4:ENST00000339290.9:ENST00000367812.6:ENST00000463282.6:ENST00000525477.5:ENST00000533837.5:ENST00000367814.8:ENST00000527615.5:ENST00000525369.5:ENST00000438901.6:ENST00000525514.5:ENST00000526320.5:ENST00000526889.5:ENST00000529586.5:ENST00000531519.5:ENST00000533808.5:ENST00000528343.5:ENST00000524588.5:ENST00000525002.5:ENST00000525940.5:ENST00000526187.5:ENST00000526565.5:ENST00000528015.5:ENST00000528140.5:ENST00000528345.5:ENST00000528774.5:ENST00000529262.5:ENST00000531634.5:ENST00000531737.5:ENST00000533384.5:ENST00000533624.5:ENST00000534044.5:ENST00000534121.5:ENST00000531845.5:ENST00000534736.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	79	2	1.81388	1.93527	2.05666	0.0371014	0.00840213	0.139201	0.0824581
chr2	99172346	99172446	1188622	0	-	0.39	(0.378,0.408]	chr2	127507	8	EXON_MRNA	EXON_MRNA:INTRON	MITD1	ENSG00000158411.11	ENST00000422537.6:ENST00000289359.6:ENST00000413710.2:ENST00000464685.1:ENST00000409107.1:ENST00000466880.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	70	2	1.48005	1.9352650000000002	2.39048	0.0596711	0.00395852	0.168954	0.057511
chr20	47324159	47324259	7349186	0	-	0.47	(0.44,0.476]	chr20	749346	52	INTRON	INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000435836.5:ENST00000446894.5:ENST00000441977.1	protein_coding	protein_coding	protein_coding	protein_coding	10	93	2	1.8376	1.9352299999999998	2.03286	0.00977911	0.00813403	0.0835427	0.0810802
chr1	92839762	92839858	162509	0	+	0.28125	(0.28,0.32]	chr1	17543	18	INTRON	INTRON	RPL5	ENSG00000122406.14	ENST00000645300.1:ENST00000370321.8:ENST00000645119.1:ENST00000497519.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	14	170	2	1.69646	1.935205	2.17395	0.0104499	0.00349625	0.0903187	0.0523494
chr4	39717455	39717555	1953185	0	+	0.59	(0.57,1]	chr4	195630	187	INTRON	INTRON	UBE2K	ENSG00000078140.14	ENST00000510934.5:ENST00000261427.10:ENST00000438068.6:ENST00000513231.5:ENST00000503368.5:ENST00000445950.2:ENST00000510719.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	33	2	1.73563	1.93504	2.13445	0.0241482	0.017048	0.12011	0.110899
chr3	197861931	197862030	1598445	0	+	0.414141	(0.408,0.44]	chr3	165649	26	INTRON	INTRON	LRCH3	ENSG00000186001.14	ENST00000438796.6:ENST00000428136.2:ENST00000425562.7:ENST00000441090.6:ENST00000414675.6:ENST00000334859.8:ENST00000461674.5:ENST00000452660.5:ENST00000433298.5:ENST00000481048.5:ENST00000471667.5:ENST00000483442.5:ENST00000473177.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	86	2	1.57567	1.934965	2.29426	0.033074	0.00277178	0.133898	0.04874
chr16	29804481	29804575	6335739	0	+	0.361702	(0.35,0.378]	chr16	606887	5	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	KIF22	ENSG00000079616.14	ENST00000690258.1:ENST00000691169.1:ENST00000689089.1:ENST00000689743.1:ENST00000685526.1:ENST00000691128.1:ENST00000691895.1:ENST00000685401.1:ENST00000689660.1:ENST00000569382.3:ENST00000689172.1:ENST00000686384.1:ENST00000691203.1:ENST00000160827.9:ENST00000693260.1:ENST00000690419.1:ENST00000689107.1:ENST00000561482.6:ENST00000400751.9:ENST00000688492.1:ENST00000691486.1:ENST00000689415.1:ENST00000688761.1:ENST00000565736.2:ENST00000568312.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	54	2	1.58862	1.9349349999999998	2.28125	0.0615516	0.0182271	0.193423	0.107842
chr2	111449046	111449145	1211342	0	-	0.363636	(0.35,0.378]	chr2	128909	13	INTRON	INTRON	MIR4435-2HG	ENSG00000172965.17	ENST00000645030.2:ENST00000642191.1:ENST00000673798.1:ENST00000645051.2:ENST00000673649.1:ENST00000669658.1:ENST00000669917.1:ENST00000661559.1:ENST00000653687.1:ENST00000667670.1:ENST00000609220.2:ENST00000656760.1:ENST00000609902.6:ENST00000666683.1:ENST00000674070.1:ENST00000662335.1:ENST00000664422.1:ENST00000673775.1:ENST00000674092.1:ENST00000673958.1:ENST00000658936.1:ENST00000662635.1:ENST00000666204.1:ENST00000659458.1:ENST00000664443.1:ENST00000670295.1:ENST00000661655.1:ENST00000666390.1:ENST00000659079.1:ENST00000660442.1:ENST00000664009.1:ENST00000439362.6:ENST00000654473.1:ENST00000664999.1:ENST00000673728.1:ENST00000659791.1:ENST00000666144.1:ENST00000659933.1:ENST00000670715.1:ENST00000653568.1:ENST00000643013.1:ENST00000673866.1:ENST00000443467.6:ENST00000669875.1:ENST00000673653.1:ENST00000673988.1:ENST00000661945.1:ENST00000669515.1:ENST00000431385.6:ENST00000656416.1:ENST00000674037.1:ENST00000432818.5:ENST00000674013.1:ENST00000444301.5:ENST00000673964.1:ENST00000673845.1:ENST00000673756.1:ENST00000673960.1:ENST00000673804.1:ENST00000673632.1:ENST00000453478.2:ENST00000673937.1:ENST00000673654.1:ENST00000409569.2:ENST00000674087.1:ENST00000419736.5:ENST00000673840.1:ENST00000674045.1:ENST00000673821.1:ENST00000643766.1:ENST00000308604.5:ENST00000674026.1:ENST00000604981.5:ENST00000673894.1:ENST00000442293.5:ENST00000441075.1	lncRNA	lncRNA	lncRNA	lncRNA	5	54	2	1.58862	1.9349349999999998	2.28125	0.0615516	0.0182271	0.193423	0.107842
chr2	32457431	32457531	731806	0	+	0.28	[0,0.28]	chr2	84399	31	INTRON	INTRON	BIRC6	ENSG00000115760.15	ENST00000421745.7:ENST00000648282.1	protein_coding	protein_coding	protein_coding	protein_coding	8	110	2	1.76263	1.934905	2.10718	0.0191804	0.0187468	0.119774	0.108861
chr1	212862831	212862929	309882	0	+	0.357143	(0.35,0.378]	chr1	35783	33	INTRON	INTRON	FLVCR1	ENSG00000162769.13	ENST00000366971.9:ENST00000419102.1	protein_coding	protein_coding	protein_coding	protein_coding	7	74	2	1.75081	1.93485	2.11889	0.0427459	0.00625927	0.148082	0.0720609
chr10	75219756	75219856	4464431	0	+	0.29	(0.28,0.32]	chr10	411830	4	SS5_PROX	SS5_PROX:INTRON	VDAC2	ENSG00000165637.14	ENST00000543351.5:ENST00000298468.9:ENST00000344036.8:ENST00000472137.5:ENST00000332211.11:ENST00000475142.5:ENST00000481876.5:ENST00000313132.8:ENST00000498394.5:ENST00000468285.1:ENST00000447677.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	10	114	2	1.7781	1.9347750000000001	2.09145	0.0172565	0.00932885	0.104099	0.0856412
chr20	35711419	35711519	7336231	0	-	0.32	(0.28,0.32]	chr20	747422	6	INTRON	INTRON	RBM39	ENSG00000131051.24	ENST00000253363.11:ENST00000639702.1:ENST00000656873.1:ENST00000463004.5:ENST00000361162.10:ENST00000461283.5:ENST00000403542.6:ENST00000338163.10:ENST00000528062.7:ENST00000429968.5:ENST00000444878.5:ENST00000665058.1:ENST00000476806.5:ENST00000495293.5:ENST00000492779.5:ENST00000465158.5:ENST00000448303.5:ENST00000470563.5:ENST00000615771.5:ENST00000471635.5:ENST00000475651.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	110	2	1.78733	1.9347699999999999	2.08221	0.0276087	0.00506211	0.123904	0.0646039
chr1	246186442	246186542	677497	0	-	0.38	(0.378,0.408]	chr1	79722	3	SS5_PROX	SS5_PROX:INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000391836.3:ENST00000453676.5:ENST00000462422.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	61	2	1.68393	1.9345249999999998	2.18512	0.0503034	0.00902136	0.156383	0.0851259
chr1	151051362	151051461	553297	0	-	0.272727	[0,0.28]	chr1	65158	5	UTR3	UTR3:EXON_MRNA	CDC42SE1	ENSG00000197622.13	ENST00000439374.6:ENST00000540998.5:ENST00000357235.6	protein_coding	protein_coding	protein_coding	protein_coding	33	457	2	1.85569	1.934475	2.01326	0.00412461	0.00104145	0.0566098	0.0296523
chr8	29055431	29055530	3726527	0	+	0.363636	(0.35,0.378]	chr8	346337	18	INTRON	INTRON	HMBOX1	ENSG00000147421.18	ENST00000522468.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	16	164	2	1.74423	1.934405	2.12458	0.00965175	0.00119771	0.0826279	0.0318521
chr1	213052708	213052808	310714	0	+	0.49	(0.476,0.515]	chr1	35901	8	INTRON	INTRON	RPS6KC1	ENSG00000136643.12	ENST00000615329.4:ENST00000543354.5:ENST00000614059.4:ENST00000543470.5:ENST00000366960.8:ENST00000366959.4	protein_coding	protein_coding	protein_coding	protein_coding	8	74	2	1.73294	1.934335	2.13573	0.0174121	0.0119549	0.112632	0.0899583
chr20	35733099	35733196	7336460	0	-	0.505155	(0.476,0.515]	chr20	747476	4	INTRON	INTRON	RBM39	ENSG00000131051.24	ENST00000253363.11:ENST00000639702.1:ENST00000656873.1:ENST00000463004.5:ENST00000361162.10:ENST00000461283.5:ENST00000403542.6:ENST00000338163.10:ENST00000528062.7:ENST00000429968.5:ENST00000444878.5:ENST00000665058.1:ENST00000374038.7:ENST00000412738.5:ENST00000434927.5:ENST00000425184.5:ENST00000481037.5:ENST00000455343.5:ENST00000416108.5:ENST00000426951.5:ENST00000477334.1:ENST00000442447.5:ENST00000449489.5:ENST00000433027.5:ENST00000487604.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	62	517	2	1.63176	1.93432	2.23688	0.00115998	1.57194e-4	0.0314098	0.0114175
chr7	26207598	26207696	3292424	0	+	0.540816	(0.515,0.57]	chr7	305849	7	INTRON	INTRON	CBX3	ENSG00000122565.19	ENST00000337620.8:ENST00000396386.7:ENST00000456948.5:ENST00000409747.5:ENST00000497498.1:ENST00000481300.1:ENST00000462165.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	43	2	1.91916	1.934305	1.94945	0.0414068	0.0231902	0.161557	0.118148
chr9	26890871	26890969	4237597	0	-	0.540816	(0.515,0.57]	chr9	389570	30	INTRON	INTRON	CAAP1	ENSG00000120159.13	ENST00000333916.8:ENST00000650615.1:ENST00000625311.1:ENST00000520187.1:ENST00000483493.6:ENST00000495958.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	43	2	1.91916	1.934305	1.94945	0.0414068	0.0231902	0.161557	0.118148
chr2	69363870	69363970	1147071	0	-	0.52	(0.515,0.57]	chr2	122510	2	SS3_PROX	SS3_PROX:INTRON	GFPT1	ENSG00000198380.13	ENST00000361060.5:ENST00000357308.9:ENST00000674507.1:ENST00000674438.1:ENST00000494201.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	50	2	1.79136	1.934285	2.07721	0.0638444	0.0067022	0.177811	0.0738715
chr16	9117207	9117305	6285629	0	+	0.306122	(0.28,0.32]	chr16	601935	4	UTR3	UTR3:EXON_MRNA	C16orf72	ENSG00000182831.12	ENST00000327827.12	protein_coding	protein_coding	protein_coding	protein_coding	7	86	2	1.86798	1.934145	2.00031	0.0335733	0.0110488	0.134145	0.0928193
chr5	55323535	55323631	2355239	0	+	0.46875	(0.44,0.476]	chr5	227129	7	INTRON	INTRON	MTREX	ENSG00000039123.16	ENST00000230640.10:ENST00000506750.5:ENST00000504388.5:ENST00000503165.5:ENST00000504997.1:ENST00000505565.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	76	2	1.81283	1.934145	2.05546	0.0343005	0.00467486	0.135641	0.0631417
chr5	60669997	60670097	2627212	0	-	0.39	(0.378,0.408]	chr5	249590	220	INTRON	INTRON	DEPDC1B	ENSG00000035499.13	ENST00000265036.10:ENST00000453022.6:ENST00000512078.5:ENST00000512452.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	42	2	1.8252	1.9340600000000001	2.04292	0.0619563	0.0326035	0.174514	0.145164
chrX	73843732	73843832	7837961	0	-	0.39	(0.378,0.408]	chrX	799611	64	EXON_LNCRNA	EXON_LNCRNA:INTRON	XIST	ENSG00000229807.13	ENST00000650627.1:ENST00000434839.3:ENST00000429829.6:ENST00000650366.1:ENST00000648607.1:ENST00000650186.1:ENST00000635841.2:ENST00000650637.1:ENST00000648970.1:ENST00000648991.1:ENST00000666309.1	lncRNA	lncRNA	lncRNA	lncRNA	37	341	2	1.84754	1.93406	2.02058	0.00114459	6.4718e-4	0.0308149	0.0230695
chr5	871864	871964	2564406	0	-	0.44	(0.408,0.44]	chr5	245463	3	SS3_PROX	SS3_PROX:INTRON	BRD9	ENSG00000028310.18	ENST00000493082.5:ENST00000467963.6:ENST00000495265.5:ENST00000490814.6:ENST00000495794.5:ENST00000483234.5:ENST00000489816.5:ENST00000483173.5:ENST00000519112.5:ENST00000523139.5:ENST00000518251.1:ENST00000475706.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	50	2	1.78881	1.9340000000000002	2.07919	0.0370259	0.0291499	0.14147	0.139194
chr11	66666832	66666928	4811320	0	+	0.260417	[0,0.28]	chr11	447923	10	UTR3	UTR3:EXON_MRNA	RBM4	ENSG00000173933.21	ENST00000396053.9	protein_coding	protein_coding	protein_coding	protein_coding	12	168	2	1.79653	1.93399	2.07145	0.0173352	0.00429665	0.104114	0.0599409
chr12	93392220	93392319	5189084	0	+	0.464646	(0.44,0.476]	chr12	490794	67	INTRON	INTRON	NUDT4	ENSG00000173598.14	ENST00000337179.9:ENST00000415493.7:ENST00000549992.5:ENST00000550056.5:ENST00000547014.5:ENST00000548662.5:ENST00000546925.1	protein_coding	protein_coding	protein_coding	protein_coding	9	82	2	1.8376	1.93397	2.03034	0.0173569	0.00813403	0.104189	0.0810802
chr21	33461791	33461890	7440794	0	-	0.212121	[0,0.28]	chr21	759350	9	INTRON	INTRON	TMEM50B	ENSG00000142188.17	ENST00000420455.5:ENST00000542230.7:ENST00000441128.5:ENST00000442441.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	115	2	1.35209	1.933965	2.51584	0.0403713	0.0115397	0.161534	0.0889104
chr5	72913572	72913670	2388129	0	+	0.326531	(0.32,0.35]	chr5	230509	50	UTR3	UTR3:EXON_MRNA	TNPO1	ENSG00000083312.19	ENST00000680533.1:ENST00000337273.10:ENST00000680025.1:ENST00000681711.1:ENST00000679378.1:ENST00000680111.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	73	2	1.6868	1.9338600000000001	2.18092	0.0256608	0.0217601	0.123836	0.120491
chr9	120761963	120762062	4335143	0	-	0.40404	(0.378,0.408]	chr9	398218	51	UTR3	UTR3:EXON_MRNA:INTRON	FBXW2	ENSG00000119402.18	ENST00000493559.1:ENST00000684405.1:ENST00000684001.1:ENST00000684047.1:ENST00000608872.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	80	2	1.41307	1.9338600000000001	2.45465	0.0510067	0.00381582	0.176593	0.0542786
chr20	35733587	35733685	7336465	0	-	0.295918	(0.28,0.32]	chr20	747476	9	INTRON	INTRON	RBM39	ENSG00000131051.24	ENST00000253363.11:ENST00000639702.1:ENST00000656873.1:ENST00000463004.5:ENST00000361162.10:ENST00000461283.5:ENST00000403542.6:ENST00000338163.10:ENST00000528062.7:ENST00000429968.5:ENST00000444878.5:ENST00000665058.1:ENST00000374038.7:ENST00000412738.5:ENST00000434927.5:ENST00000425184.5:ENST00000481037.5:ENST00000455343.5:ENST00000416108.5:ENST00000426951.5:ENST00000477334.1:ENST00000442447.5:ENST00000449489.5:ENST00000433027.5:ENST00000487604.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	29	325	2	1.80661	1.933855	2.0611	0.00276808	0.00163287	0.0469265	0.0372222
chr14	49670293	49670391	5886324	0	-	0.285714	(0.28,0.32]	chr14	558602	3	INTRON	INTRON	POLE2	ENSG00000100479.13	ENST00000216367.10:ENST00000539565.6:ENST00000556584.5:ENST00000554396.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	62	2	1.85772	1.933805	2.00989	0.0427801	0.0300199	0.148082	0.142135
chr2	107701655	107701754	1205565	0	-	0.30303	(0.28,0.32]	chr2	128520	22	INTRON	INTRON	LINC01885:ENSG00000286769	ENSG00000237880.2:ENSG00000286769.1	ENST00000654481.1:ENST00000669817.1	lncRNA	lncRNA	lncRNA	lncRNA	5	62	2	1.85772	1.933805	2.00989	0.0427801	0.0300199	0.148082	0.142135
chr4	78859249	78859332	1982223	0	+	0.337349	(0.32,0.35]	chr4	198506	2	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	BMP2K	ENSG00000138756.19	ENST00000389010.7:ENST00000502613.3:ENST00000502871.5:ENST00000505725.1:ENST00000515075.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	55	2	1.42176	1.93378	2.4458	0.0511006	0.0425977	0.176696	0.148082
chr7	26205183	26205280	3292398	0	+	0.391753	(0.378,0.408]	chr7	305843	18	INTRON	INTRON	CBX3	ENSG00000122565.19	ENST00000337620.8:ENST00000396386.7:ENST00000456948.5:ENST00000409747.5:ENST00000497498.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	71	2	1.82119	1.933705	2.04622	0.0214651	0.0149927	0.114274	0.107704
chr8	129545037	129545137	4060733	0	-	0.48	(0.476,0.515]	chr8	369648	345	INTRON	INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1:ENST00000676273.1:ENST00000667643.1:ENST00000668791.1:ENST00000663716.1:ENST00000663572.1:ENST00000676148.1:ENST00000667962.1:ENST00000674877.1:ENST00000675316.1:ENST00000674656.1:ENST00000446592.7:ENST00000667341.1:ENST00000675186.1:ENST00000652971.1:ENST00000661447.1:ENST00000674863.1:ENST00000675498.1:ENST00000675527.1:ENST00000676108.1:ENST00000657647.1:ENST00000675589.1:ENST00000675913.1:ENST00000675109.1:ENST00000671632.1:ENST00000671311.1:ENST00000676099.1:ENST00000660652.1:ENST00000675522.1:ENST00000675183.1:ENST00000658861.1:ENST00000663991.1:ENST00000675044.1:ENST00000675435.1:ENST00000674639.1:ENST00000676069.1:ENST00000675532.1:ENST00000674762.1:ENST00000523151.6:ENST00000675948.1:ENST00000665364.1:ENST00000657251.1:ENST00000675166.1:ENST00000674883.1:ENST00000675867.1:ENST00000674580.1:ENST00000675393.1:ENST00000520048.1:ENST00000674906.1:ENST00000676030.1:ENST00000670588.1:ENST00000675072.1:ENST00000664936.1:ENST00000652914.1:ENST00000657069.1	lncRNA	lncRNA	lncRNA	lncRNA	15	138	2	1.69555	1.93369	2.17183	0.00855345	0.00174985	0.0780357	0.0386524
chr19	28532401	28532501	7166419	0	-	0.39	(0.378,0.408]	chr19	724189	642	INTRON	INTRON	ENSG00000283403:ENSG00000267243	ENSG00000283403.1:ENSG00000267243.6	ENST00000592347.5:ENST00000593065.5	lncRNA	lncRNA	lncRNA	lncRNA	26	251	2	1.83967	1.933645	2.02762	0.00281676	6.45251e-4	0.0472361	0.023014
chr11	66751196	66751295	4811407	0	+	0.535354	(0.515,0.57]	chr11	447936	23	INTRON	INTRON	C11orf80	ENSG00000173715.18	ENST00000534325.5:ENST00000524551.5:ENST00000525908.6:ENST00000540737.7:ENST00000527634.5:ENST00000527368.5:ENST00000531400.6:ENST00000642265.1:ENST00000532565.6:ENST00000525449.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	37	2	1.62814	1.9336449999999998	2.23915	0.0596178	0.035203	0.16883600000000001	0.150193
chr19	57863524	57863623	7106173	0	+	0.414141	(0.408,0.44]	chr19	713245	35	UTR3	UTR3:EXON_MRNA	ZNF587	ENSG00000198466.12	ENST00000339656.8:ENST00000419854.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	17	160	2	1.88723	1.933425	1.97962	0.00311977	0.00284218	0.0498663	0.0493576
chr4	68317142	68317239	2154541	0	-	0.515464	(0.515,0.57]	chr4	212215	3	INTRON	INTRON	YTHDC1	ENSG00000083896.13	ENST00000344157.9:ENST00000355665.7:ENST00000579690.5:ENST00000507529.1	protein_coding	protein_coding	protein_coding	protein_coding	6	48	2	1.53845	1.933405	2.32836	0.0475376	0.0126662	0.153019	0.0982897
chr18	2659059	2659159	6864893	0	+	0.35	(0.32,0.35]	chr18	679940	24	INTRON	INTRON	SMCHD1	ENSG00000101596.17	ENST00000320876.11:ENST00000688342.1:ENST00000684915.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	96	2	1.50457	1.9333999999999998	2.36223	0.0309203	0.00625472	0.143443	0.0684171
chr7	105051991	105052091	3375002	0	+	0.35	(0.32,0.35]	chr7	315877	106	INTRON	INTRON	KMT2E	ENSG00000005483.22	ENST00000622386.2:ENST00000257745.9:ENST00000334884.9:ENST00000311117.8:ENST00000478990.5:ENST00000495267.5:ENST00000476671.5:ENST00000667857.1:ENST00000474203.5:ENST00000482560.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	80	2	1.60034	1.93337	2.2664	0.0221816	0.0199969	0.124191	0.109608
chr5	79618375	79618467	2398785	0	+	0.391304	(0.378,0.408]	chr5	231687	4	INTRON	INTRON	TENT2	ENSG00000164329.14	ENST00000505571.5:ENST00000423041.6:ENST00000504233.5:ENST00000453514.6:ENST00000428308.6:ENST00000515807.5:ENST00000296783.7:ENST00000514095.5:ENST00000508620.5:ENST00000503620.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	12	118	2	1.84255	1.9333550000000002	2.02416	0.0099264	0.00361901	0.0839368	0.0554656
chr4	82845293	82845393	2179617	0	-	0.3	(0.28,0.32]	chr4	214283	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	SEC31A	ENSG00000138674.17	ENST00000395310.7:ENST00000513858.5:ENST00000348405.8:ENST00000448323.5:ENST00000311785.11:ENST00000509142.5:ENST00000443462.6:ENST00000500777.6:ENST00000505472.5:ENST00000355196.6:ENST00000508502.5:ENST00000264405.9:ENST00000505984.5:ENST00000511338.1:ENST00000508479.5	protein_coding	protein_coding	protein_coding	protein_coding	8	98	2	1.76048	1.9333200000000001	2.10616	0.0450149	0.00457639	0.149888	0.0622676
chr1	246047456	246047556	676105	0	-	0.31	(0.28,0.32]	chr1	79713	590	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000391836.3:ENST00000464398.1:ENST00000453676.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	52	2	1.90263	1.933195	1.96376	0.0503272	0.0480066	0.17488	0.153019
chr1	65289283	65289383	135886	0	+	0.5	(0.476,0.515]	chr1	15346	240	INTRON	INTRON	DNAJC6	ENSG00000116675.16	ENST00000463018.5:ENST00000494710.6:ENST00000263441.11:ENST00000395325.7:ENST00000483402.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	56	2	1.54629	1.93315	2.32001	0.0484352	0.0136217	0.153635	0.101682
chr17	49031509	49031609	6624950	0	+	0.51	(0.476,0.515]	chr17	646615	2	SS3_PROX	SS3_PROX:INTRON	IGF2BP1	ENSG00000159217.10	ENST00000290341.8:ENST00000431824.2:ENST00000515586.5:ENST00000499130.6:ENST00000505562.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	56	2	1.54629	1.93315	2.32001	0.0484352	0.0136217	0.153635	0.101682
chrX	44895986	44896085	7648830	0	+	0.30303	(0.28,0.32]	chrX	782726	216	INTRON	INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000675440.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000621147.5:ENST00000475233.1:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	62	2	1.90249	1.933125	1.96376	0.0480066	0.0261803	0.153019	0.133676
chr12	76077636	76077736	5370155	0	-	0.42	(0.408,0.44]	chr12	512329	30	INTRON	INTRON	NAP1L1	ENSG00000187109.15	ENST00000618691.5:ENST00000393263.7:ENST00000431879.7:ENST00000547773.5:ENST00000544816.5:ENST00000542344.5:ENST00000535020.6:ENST00000549596.5:ENST00000552342.5:ENST00000548044.5:ENST00000550934.5:ENST00000551992.5:ENST00000548273.5:ENST00000551600.5:ENST00000547704.5:ENST00000549988.5:ENST00000547479.5:ENST00000549479.1:ENST00000551500.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	11	94	2	1.4727	1.9330949999999998	2.39349	0.0217118	0.00467273	0.123836	0.0600108
chr12	111592952	111593052	5413169	0	-	0.31	(0.28,0.32]	chr12	516941	282	INTRON	INTRON	ATXN2	ENSG00000204842.18	ENST00000642389.2:ENST00000608853.5:ENST00000672613.1:ENST00000673436.1:ENST00000643669.2:ENST00000616825.4:ENST00000389153.10:ENST00000550104.5:ENST00000483311.6:ENST00000672335.1:ENST00000673557.1:ENST00000673283.1:ENST00000673449.1:ENST00000535949.5:ENST00000542287.6:ENST00000644883.1:ENST00000647305.1:ENST00000671792.1:ENST00000392645.6:ENST00000672105.1:ENST00000549455.1:ENST00000548492.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	62	2	1.81152	1.9330500000000002	2.05458	0.0381508	0.034446	0.147767	0.141764
chrX	41349796	41349894	7645834	0	+	0.316327	(0.28,0.32]	chrX	782558	20	UTR3	UTR3:EXON_MRNA:INTRON	DDX3X	ENSG00000215301.11	ENST00000625837.2:ENST00000626301.2:ENST00000629785.2:ENST00000630255.2:ENST00000630370.2:ENST00000630858.2:ENST00000629496.3:ENST00000478993.5:ENST00000457138.7:ENST00000644876.2:ENST00000399959.7:ENST00000644074.1:ENST00000645338.1:ENST00000646196.1:ENST00000642793.1:ENST00000646940.1:ENST00000644307.1:ENST00000645561.1:ENST00000645080.1:ENST00000642597.1:ENST00000642722.1:ENST00000644109.1:ENST00000644958.1:ENST00000646122.1:ENST00000644513.1:ENST00000645589.1:ENST00000441189.4:ENST00000646223.1:ENST00000643963.1:ENST00000646319.1:ENST00000644073.1:ENST00000644677.1:ENST00000642322.1:ENST00000645120.1:ENST00000642589.1:ENST00000645380.1:ENST00000642424.1:ENST00000642161.1:ENST00000645574.1:ENST00000646679.1:ENST00000647286.1:ENST00000642687.1:ENST00000642801.1:ENST00000616050.3:ENST00000647477.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	62	2	1.81152	1.9330500000000002	2.05458	0.0381508	0.034446	0.147767	0.141764
chr7	87159565	87159664	3345694	0	+	0.282828	(0.28,0.32]	chr7	311631	37	INTRON	INTRON	DMTF1	ENSG00000135164.19	ENST00000413276.6:ENST00000447863.5:ENST00000579677.5:ENST00000425406.5:ENST00000446796.6:ENST00000420131.5:ENST00000414630.6:ENST00000547146.6:ENST00000579850.5:ENST00000453049.5:ENST00000331242.12:ENST00000430405.7:ENST00000449088.7:ENST00000448598.5:ENST00000428819.5:ENST00000432937.6:ENST00000584619.5:ENST00000432366.6:ENST00000423590.6:ENST00000394703.9:ENST00000584457.5:ENST00000580710.5:ENST00000579592.5:ENST00000434534.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	75	2	1.79721	1.9330249999999998	2.06884	0.0408024	0.0152581	0.1451	0.108569
chr19	29977080	29977179	7047904	0	+	0.363636	(0.35,0.378]	chr19	702669	55	INTRON	INTRON	URI1	ENSG00000105176.18	ENST00000360605.8:ENST00000570564.5:ENST00000574233.5:ENST00000392271.6:ENST00000574110.5:ENST00000574666.5:ENST00000576442.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	89	2	1.60176	1.93302	2.26428	0.0213692	0.00831504	0.123719	0.0774402
chr4	119456259	119456349	2026359	0	+	0.366667	(0.35,0.378]	chr4	201549	8	INTRON	INTRON	SEPTIN7P14	ENSG00000245958.7	ENST00000692067.1:ENST00000686002.1:ENST00000511950.1:ENST00000689183.1:ENST00000688315.1:ENST00000688480.1:ENST00000688857.1:ENST00000686202.1:ENST00000693650.1:ENST00000692945.1:ENST00000515251.2:ENST00000504422.5:ENST00000502760.2:ENST00000508519.6:ENST00000510011.6:ENST00000693497.1:ENST00000685974.1:ENST00000692409.1:ENST00000692642.1:ENST00000690731.1:ENST00000686925.1:ENST00000685525.1:ENST00000685769.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	10	102	2	1.78739	1.932995	2.0786	0.0104819	0.00903914	0.0905779	0.0805265
chr6	53324661	53324761	3107946	0	-	0.35	(0.32,0.35]	chr6	291049	286	INTRON	INTRON	ELOVL5	ENSG00000012660.14	ENST00000370918.8:ENST00000542638.5:ENST00000304434.11:ENST00000485336.5:ENST00000465983.5:ENST00000486973.1:ENST00000370913.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	88	2	1.64168	1.932985	2.22429	0.0226421	0.014976	0.117557	0.107704
chr3	185931852	185931952	1886542	0	-	0.29	(0.28,0.32]	chr3	188639	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	TRA2B	ENSG00000136527.19	ENST00000453386.7:ENST00000487615.5:ENST00000456380.5:ENST00000382191.4:ENST00000465245.1:ENST00000485530.5:ENST00000471134.1:ENST00000480461.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	98	2	1.45717	1.932965	2.40876	0.0472947	0.00588618	0.16913	0.0669992
chr16	85576942	85577042	6415601	0	+	0.58	(0.57,1]	chr16	615470	202	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	7	37	2	1.67986	1.9328249999999998	2.18579	0.0496395	0.00400391	0.174685	0.0551303
chr3	186789269	186789358	1586159	0	+	0.449438	(0.44,0.476]	chr3	164303	1	UTR3	UTR3:EXON_MRNA	EIF4A2	ENSG00000156976.17	ENST00000426808.5:ENST00000323963.10:ENST00000440191.6:ENST00000425053.5:ENST00000485101.5:ENST00000443963.5:ENST00000494445.1:ENST00000496382.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	18	155	2	1.78205	1.9328049999999999	2.08356	0.00502853	0.0024214	0.0619934	0.0454587
chr3	37079573	37079672	1655646	0	-	0.272727	[0,0.28]	chr3	169908	41	INTRON	INTRON	LRRFIP2	ENSG00000093167.18	ENST00000336686.9:ENST00000354379.8:ENST00000421276.6:ENST00000396428.6:ENST00000440230.5:ENST00000440742.2:ENST00000416425.5	protein_coding	protein_coding	protein_coding	protein_coding	8	82	2	1.27002	1.93275	2.59548	0.0594396	0.0346067	0.189982	0.136649
chr7	106776022	106776122	3376078	0	+	0.4	(0.378,0.408]	chr7	316126	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	LINC02577	ENSG00000228742.11	ENST00000650196.1:ENST00000658697.1:ENST00000490162.3:ENST00000602761.2:ENST00000659396.1:ENST00000659665.1:ENST00000655590.1:ENST00000470135.5	lncRNA	lncRNA	lncRNA	lncRNA	5	52	2	1.82258	1.93275	2.04292	0.0341279	0.0326035	0.145164	0.135102
chr9	137746040	137746136	4224770	0	+	0.385417	(0.378,0.408]	chr9	388258	6	UTR3	UTR3:EXON_MRNA:INTRON	EHMT1	ENSG00000181090.21	ENST00000462484.5:ENST00000371394.6:ENST00000460843.6:ENST00000629335.2:ENST00000636027.1:ENST00000637161.1:ENST00000637261.1:ENST00000637977.1:ENST00000626066.2:ENST00000638071.1:ENST00000495657.5:ENST00000637318.1:ENST00000640639.1:ENST00000629808.2:ENST00000462942.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	52	2	1.82258	1.93275	2.04292	0.0341279	0.0326035	0.145164	0.135102
chr2	238189252	238189352	1344101	0	-	0.48	(0.476,0.515]	chr2	140921	6	INTRON	INTRON	ILKAP	ENSG00000132323.9	ENST00000254654.8:ENST00000463129.5:ENST00000612675.4:ENST00000622223.4:ENST00000457149.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	62	2	1.32871	1.93271	2.53671	0.0678032	0.00624027	0.184298	0.0718843
chr8	11829843	11829943	3702805	0	+	0.5	(0.476,0.515]	chr8	343520	2	SS3_PROX	SS3_PROX:INTRON	FDFT1	ENSG00000079459.13	ENST00000538689.4:ENST00000615631.4:ENST00000618539.4:ENST00000623368.3:ENST00000446331.6:ENST00000443614.6:ENST00000220584.9:ENST00000525607.5:ENST00000525283.5:ENST00000529464.5:ENST00000525900.5:ENST00000528812.5:ENST00000622850.2:ENST00000530664.5:ENST00000525954.5:ENST00000532266.5:ENST00000528643.5:ENST00000525777.5:ENST00000528729.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	62	2	1.32871	1.93271	2.53671	0.0678032	0.00624027	0.184298	0.0718843
chr18	9108867	9108966	6868655	0	+	0.515152	(0.476,0.515]	chr18	680510	35	INTRON	INTRON	NDUFV2	ENSG00000178127.13	ENST00000577703.1:ENST00000318388.11:ENST00000583375.5:ENST00000400033.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	12	89	2	1.36594	1.9326750000000001	2.49941	0.0243143	0.00811651	0.131016	0.0766625
chr7	152085700	152085799	3450116	0	+	0.444444	(0.44,0.476]	chr7	322451	59	INTRON	INTRON	GALNT11	ENSG00000178234.13	ENST00000430044.7:ENST00000482812.1:ENST00000431668.1:ENST00000446096.5:ENST00000447778.5:ENST00000423337.5:ENST00000434507.5:ENST00000415421.5:ENST00000422997.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	10	93	2	1.47888	1.93261	2.38634	0.0349698	0.0018045	0.13747500000000001	0.039301
chr8	129494543	129494617	4060226	0	-	0.445946	(0.44,0.476]	chr8	369639	1	EXON_LNCRNA	EXON_LNCRNA:INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1:ENST00000676273.1:ENST00000667643.1:ENST00000668791.1:ENST00000663716.1:ENST00000663572.1:ENST00000676148.1:ENST00000667962.1:ENST00000674877.1:ENST00000675316.1:ENST00000674656.1:ENST00000446592.7:ENST00000667341.1:ENST00000675186.1:ENST00000652971.1:ENST00000661447.1:ENST00000674863.1:ENST00000675498.1:ENST00000675527.1:ENST00000676108.1:ENST00000657647.1:ENST00000675589.1:ENST00000675913.1:ENST00000675109.1:ENST00000671632.1:ENST00000671311.1:ENST00000676099.1:ENST00000660652.1:ENST00000675522.1:ENST00000675183.1:ENST00000658861.1:ENST00000663991.1:ENST00000675044.1:ENST00000675435.1:ENST00000674639.1:ENST00000676069.1:ENST00000675532.1:ENST00000674762.1:ENST00000523151.6:ENST00000675948.1:ENST00000665364.1:ENST00000657251.1:ENST00000675166.1:ENST00000674883.1:ENST00000675867.1:ENST00000674580.1:ENST00000675393.1:ENST00000520048.1:ENST00000674906.1:ENST00000676030.1:ENST00000670588.1:ENST00000675072.1:ENST00000664936.1:ENST00000652914.1:ENST00000657069.1	lncRNA	lncRNA	lncRNA	lncRNA	5	50	2	1.85904	1.9325649999999999	2.00609	0.0360127	0.029889	0.152355	0.129138
chrX	71292089	71292184	7678089	0	+	0.326316	(0.32,0.35]	chrX	786085	2	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	NONO	ENSG00000147140.17	ENST00000677446.1:ENST00000677274.1:ENST00000535149.5:ENST00000420903.6:ENST00000678335.1:ENST00000678830.1:ENST00000677826.1:ENST00000473525.2:ENST00000678437.1:ENST00000676499.1:ENST00000676495.1:ENST00000678323.1:ENST00000677766.1:ENST00000679267.1:ENST00000373856.8:ENST00000679254.1:ENST00000677879.1:ENST00000677245.1:ENST00000373841.5:ENST00000276079.13:ENST00000679029.1:ENST00000677218.1:ENST00000676797.1:ENST00000679062.1:ENST00000678660.1:ENST00000677014.1:ENST00000678231.1:ENST00000474431.5:ENST00000677612.1:ENST00000677977.1:ENST00000471419.7:ENST00000472185.1:ENST00000413858.5:ENST00000486613.6:ENST00000450092.6:ENST00000454976.2:ENST00000418921.1:ENST00000490044.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	70	2	1.83315	1.9325649999999999	2.03198	0.0313348	0.0193728	0.144381	0.108916
chr4	39728634	39728734	1953297	0	+	0.54	(0.515,0.57]	chr4	195630	299	INTRON	INTRON	UBE2K	ENSG00000078140.14	ENST00000510934.5:ENST00000261427.10:ENST00000438068.6:ENST00000513231.5:ENST00000503368.5:ENST00000445950.2:ENST00000510719.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	25	197	2	1.57513	1.932505	2.28988	0.00712473	1.11114e-4	0.0723634	0.0089625
chr18	32094184	32094284	6887282	0	+	0.3	(0.28,0.32]	chr18	682655	9	INTRON	INTRON	RNF138	ENSG00000134758.14	ENST00000261593.8:ENST00000585103.5:ENST00000578914.1:ENST00000580519.1:ENST00000578107.5:ENST00000583733.1:ENST00000257190.9:ENST00000580499.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	86	2	1.57779	1.932465	2.28714	0.0502605	0.00696126	0.156383	0.0754576
chr3	6491446	6491545	1356152	0	+	0.383838	(0.378,0.408]	chr3	142500	1	INTRON	INTRON	ENSG00000189229	ENSG00000189229.12	ENST00000660158.1:ENST00000433639.1:ENST00000655754.1:ENST00000653839.1:ENST00000662846.1:ENST00000659876.1:ENST00000414438.2:ENST00000658468.1:ENST00000414603.1	lncRNA	lncRNA	lncRNA	lncRNA	9	85	2	1.3638	1.9323949999999999	2.50099	0.0513185	0.00245021	0.158207	0.0457892
chr1	20783115	20783214	389827	0	-	0.252525	[0,0.28]	chr1	46582	22	INTRON	INTRON	HP1BP3	ENSG00000127483.19	ENST00000438032.6:ENST00000312239.10:ENST00000424732.5:ENST00000417710.5:ENST00000375000.5:ENST00000437575.5:ENST00000419490.5:ENST00000414993.1:ENST00000443615.1	protein_coding	protein_coding	protein_coding	protein_coding	9	120	2	1.70763	1.93237	2.15711	0.0175613	0.0161128	0.11319	0.101453
chr1	65374931	65375031	136751	0	+	0.37	(0.35,0.378]	chr1	15376	84	INTRON	INTRON	DNAJC6	ENSG00000116675.16	ENST00000494710.6:ENST00000263441.11:ENST00000395325.7:ENST00000371069.5:ENST00000472787.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	64	2	1.7942	1.932345	2.07049	0.0378648	0.0140397	0.141212	0.102801
chr9	137104623	137104721	4222834	0	+	0.55102	(0.515,0.57]	chr9	387932	31	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	MAN1B1	ENSG00000177239.16	ENST00000682881.1:ENST00000683324.1:ENST00000684138.1:ENST00000683135.1:ENST00000542372.2:ENST00000371587.9:ENST00000684366.1:ENST00000684229.1:ENST00000683355.1:ENST00000682117.1:ENST00000683475.1:ENST00000682425.1:ENST00000684645.1:ENST00000683979.1:ENST00000371589.9:ENST00000535144.6:ENST00000684272.1:ENST00000475449.7:ENST00000684759.1:ENST00000545539.6:ENST00000684144.1:ENST00000683987.1:ENST00000682212.1:ENST00000544448.6:ENST00000684297.1:ENST00000474902.5:ENST00000682964.1:ENST00000535028.6:ENST00000536349.6:ENST00000684336.1:ENST00000540391.5:ENST00000480100.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	75	2	1.32091	1.932315	2.54372	0.0433059	0.00205444	0.162255	0.0409693
chr7	32871080	32871180	3515413	0	-	0.35	(0.32,0.35]	chr7	327767	2	SS3_PROX	SS3_PROX:INTRON	KBTBD2	ENSG00000170852.12	ENST00000304056.9:ENST00000485611.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	106	2	1.90165	1.9322650000000001	1.96288	0.0239991	0.00508454	0.119664	0.0646039
chr3	152285738	152285837	1535152	0	+	0.484848	(0.476,0.515]	chr3	159981	156	INTRON	INTRON	MBNL1	ENSG00000152601.18	ENST00000477171.1:ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000461436.1:ENST00000495875.6:ENST00000324210.10:ENST00000493459.5:ENST00000459747.1:ENST00000460591.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	74	2	1.65426	1.932255	2.21025	0.0231344	0.00913757	0.126939	0.0812335
chr19	57843859	57843958	7105969	0	+	0.363636	(0.35,0.378]	chr19	713218	14	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	ENSG00000268750:ZNF587B	ENSG00000268750.7:ENSG00000269343.9	ENST00000597134.5:ENST00000596498.2:ENST00000593873.6:ENST00000603271.1:ENST00000598031.1:ENST00000442832.8:ENST00000594901.2:ENST00000604231.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	104	2	1.7456	1.932245	2.11889	0.0149831	0.00625927	0.0994339	0.0720609
chr7	107483641	107483741	3612222	0	-	0.42	(0.408,0.44]	chr7	336698	28	INTRON	INTRON	COG5	ENSG00000164597.15	ENST00000297135.9:ENST00000347053.8:ENST00000393603.7:ENST00000475638.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	78	2	1.53812	1.9321549999999998	2.32619	0.0501609	0.00239266	0.156383	0.0450826
chr6	47591961	47592061	2874721	0	+	0.33	(0.32,0.35]	chr6	272786	95	INTRON	INTRON	CD2AP	ENSG00000198087.7	ENST00000359314.5	protein_coding	protein_coding	protein_coding	protein_coding	16	171	2	1.87922	1.93211	1.985	0.00651783	0.00286694	0.0699952	0.0494641
chr2	75884588	75884688	817005	0	+	0.35	(0.32,0.35]	chr2	91391	117	INTRON	INTRON	ENSG00000287474	ENSG00000287474.1	ENST00000670606.1	lncRNA	lncRNA	lncRNA	lncRNA	13	141	2	1.62699	1.9320650000000001	2.23714	0.0128768	0.00333584	0.0990564	0.0512081
chr5	154770579	154770679	2527150	0	+	0.49	(0.476,0.515]	chr5	241610	127	INTRON	INTRON	LARP1	ENSG00000155506.19	ENST00000687700.1:ENST00000336314.9:ENST00000690816.1:ENST00000518297.6:ENST00000517616.5:ENST00000518892.1:ENST00000521577.1:ENST00000519931.5:ENST00000524248.5:ENST00000685946.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	67	2	1.36472	1.9320650000000001	2.49941	0.0467985	0.00811651	0.167716	0.0766625
chr1	27468901	27469001	406552	0	-	0.33	(0.32,0.35]	chr1	48986	396	INTRON	INTRON	WASF2	ENSG00000158195.11	ENST00000618852.5:ENST00000536657.1	protein_coding	protein_coding	protein_coding	protein_coding	16	155	2	1.13396	1.932015	2.73007	0.0574607	3.84645e-4	0.167723	0.0177489
chr19	58247910	58248010	7106720	0	+	0.55	(0.515,0.57]	chr19	713338	4	INTRON	INTRON	ZNF544	ENSG00000198131.15	ENST00000599227.5:ENST00000687789.1:ENST00000594384.5:ENST00000652201.1:ENST00000596825.5:ENST00000596929.5:ENST00000596677.5:ENST00000600220.5:ENST00000600044.5:ENST00000596652.5:ENST00000599953.1:ENST00000598880.5:ENST00000595981.5:ENST00000627781.2:ENST00000269829.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	12	97	2	1.88463	1.931695	1.97876	0.00610685	0.00501242	0.0706941	0.0618344
chr13	83049617	83049717	5633743	0	-	0.36	(0.35,0.378]	chr13	536804	2707	INTRON	INTRON	ENSG00000286385	ENSG00000286385.1	ENST00000663739.1	lncRNA	lncRNA	lncRNA	lncRNA	7	72	2	1.63291	1.93167	2.23043	0.0289396	0.0187487	0.1274	0.117523
chr21	10447534	10447633	7368470	0	+	0.454545	(0.44,0.476]	chr21	751975	323	INTRON	INTRON	BAGE2	ENSG00000187172.15	ENST00000474011.5:ENST00000470054.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	9	85	2	1.92621	1.93167	1.93713	0.0138947	0.00813281	0.0955491	0.0810802
chr8	123353114	123353213	4042189	0	-	0.494949	(0.476,0.515]	chr8	368721	33	INTRON	INTRON	ATAD2	ENSG00000156802.13	ENST00000287394.10:ENST00000517666.5:ENST00000521903.5:ENST00000519124.5:ENST00000521496.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	63	2	1.486	1.9316550000000001	2.37731	0.0430512	0.0111793	0.148082	0.0937192
chr12	121346895	121346995	5437131	0	-	0.41	(0.408,0.44]	chr12	519920	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	ANAPC5	ENSG00000089053.13	ENST00000261819.8:ENST00000541887.5:ENST00000534976.5:ENST00000441917.6:ENST00000541652.5:ENST00000544442.5:ENST00000536416.5:ENST00000539871.1:ENST00000536837.1:ENST00000545801.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	49	2	1.69566	1.9315600000000002	2.16746	0.0453922	0.024436	0.164236	0.12011
chr3	33799638	33799738	1394389	0	+	0.28	[0,0.28]	chr3	146020	1	SS5_PROX	SS5_PROX:INTRON	PDCD6IP	ENSG00000170248.15	ENST00000457054.6:ENST00000648706.1:ENST00000435909.5:ENST00000430877.5:ENST00000413073.1:ENST00000307296.8:ENST00000477798.5:ENST00000498147.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	71	2	1.84046	1.931555	2.02265	0.0449017	0.0335889	0.149888	0.146709
chr18	59335116	59335214	6980793	0	-	0.5	(0.476,0.515]	chr18	690731	15	INTRON	INTRON	LMAN1	ENSG00000074695.6	ENST00000251047.6	protein_coding	protein_coding	protein_coding	protein_coding	7	67	2	1.79187	1.931515	2.07116	0.0362169	0.00731321	0.138959	0.076234
chr3	6541913	6542013	1356660	0	+	0.33	(0.32,0.35]	chr3	142508	288	INTRON	INTRON	ENSG00000189229	ENSG00000189229.12	ENST00000660158.1:ENST00000433639.1:ENST00000655754.1:ENST00000653839.1:ENST00000662846.1:ENST00000659876.1:ENST00000414438.2:ENST00000658468.1:ENST00000414603.1:ENST00000669512.1:ENST00000667028.1:ENST00000655541.1:ENST00000668643.1:ENST00000671568.1:ENST00000671036.1:ENST00000669798.1:ENST00000655753.1:ENST00000655856.1:ENST00000658398.1:ENST00000661518.1:ENST00000661279.1:ENST00000655495.1:ENST00000663041.1:ENST00000659827.1:ENST00000667716.1:ENST00000662508.1:ENST00000668416.1:ENST00000658133.1:ENST00000659651.1:ENST00000342990.4:ENST00000660054.1:ENST00000671370.1	lncRNA	lncRNA	lncRNA	lncRNA	6	65	2	1.68188	1.9314	2.18092	0.031521	0.0256608	0.144381	0.120491
chr11	123062063	123062159	5047184	0	-	0.583333	(0.57,1]	chr11	476167	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	HSPA8	ENSG00000109971.14	ENST00000453788.6:ENST00000533540.5:ENST00000534624.6:ENST00000533238.5:ENST00000527983.5:ENST00000528292.5:ENST00000532780.5:ENST00000525463.5:ENST00000532167.5:ENST00000525624.5:ENST00000527387.5:ENST00000531063.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	33	153	2	1.806	1.931325	2.05665	6.9322e-4	1.81278e-4	0.0241774	0.0117212
chr2	55024885	55024985	1121151	0	-	0.37	(0.35,0.378]	chr2	120150	4	SS5_PROX	SS5_PROX:INTRON	RTN4	ENSG00000115310.19	ENST00000404909.5:ENST00000394611.6:ENST00000317610.11:ENST00000357732.8:ENST00000337526.11:ENST00000357376.7:ENST00000405240.5:ENST00000438462.1	protein_coding	protein_coding	protein_coding	protein_coding	7	58	2	1.46325	1.93132	2.39939	0.0458078	0.0346125	0.149888	0.148144
chr17	30783622	30783716	6751816	0	-	0.340426	(0.32,0.35]	chr17	663571	11	UTR3	UTR3:EXON_MRNA:INTRON	CRLF3	ENSG00000176390.12	ENST00000585268.1:ENST00000583527.1:ENST00000324238.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	81	2	1.27507	1.9313	2.58753	0.0696455	0.00560122	0.184298	0.0678837
chr22	21852027	21852127	7561230	0	-	0.26	[0,0.28]	chr22	773388	438	INTRON	INTRON	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	6	82	2	1.83992	1.931285	2.02265	0.0449017	0.0212029	0.149888	0.123192
chr16	47474962	47475062	6343438	0	+	0.53	(0.515,0.57]	chr16	608849	106	INTRON	INTRON	PHKB	ENSG00000102893.17	ENST00000566037.6:ENST00000566044.5:ENST00000299167.12:ENST00000696809.1:ENST00000323584.10:ENST00000565424.2:ENST00000567402.5:ENST00000563376.5:ENST00000564873.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	48	2	1.84511	1.93124	2.01737	0.0352218	0.0167182	0.137535	0.110511
chr3	195974296	195974396	1896806	0	-	0.43	(0.408,0.44]	chr3	189828	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	SDHAP1	ENSG00000185485.14	ENST00000427841.5:ENST00000440850.5:ENST00000457601.1	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript:transcribed_unprocessed_pseudogene	5	49	2	1.58763	1.9311350000000003	2.27464	0.0639217	0.0158016	0.177824	0.109464
chr11	85982264	85982344	5013951	0	-	0.2875	(0.28,0.32]	chr11	472934	2	SS3_PROX	SS3_PROX:INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000530692.5:ENST00000630913.2:ENST00000529760.5:ENST00000528398.5:ENST00000532603.5:ENST00000356360.9:ENST00000529016.5:ENST00000526961.5:ENST00000530542.1	protein_coding	protein_coding	protein_coding	protein_coding	7	79	2	1.56481	1.930945	2.29708	0.0339805	0.0195087	0.146815	0.109483
chr17	31993598	31993681	6596252	0	+	0.506024	(0.476,0.515]	chr17	641594	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SUZ12	ENSG00000178691.11	ENST00000322652.10:ENST00000580398.1	protein_coding	protein_coding	protein_coding	protein_coding	4	40	2	1.79693	1.93092	2.06491	0.0649782	0.0304733	0.179417	0.143385
chr19	34173063	34173163	7050808	0	+	0.49	(0.476,0.515]	chr19	703186	3	SS5_PROX	SS5_PROX:INTRON	LSM14A	ENSG00000257103.9	ENST00000544216.8:ENST00000589878.5:ENST00000540746.6:ENST00000433627.9:ENST00000586157.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	40	2	1.79693	1.93092	2.06491	0.0649782	0.0304733	0.179417	0.143385
chr2	61535580	61535676	1131206	0	-	0.270833	[0,0.28]	chr2	121645	13	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	XPO1	ENSG00000082898.19	ENST00000676553.1:ENST00000677556.1:ENST00000677814.1:ENST00000676771.1:ENST00000677803.1:ENST00000677239.1:ENST00000678790.1:ENST00000677928.1:ENST00000678182.1:ENST00000677150.1:ENST00000678172.1:ENST00000678360.1:ENST00000678081.1:ENST00000676889.1:ENST00000676783.1:ENST00000679035.1:ENST00000677422.1:ENST00000677417.1:ENST00000677813.1:ENST00000676999.1:ENST00000676667.1:ENST00000401558.7:ENST00000428210.5:ENST00000677290.1:ENST00000677850.1:ENST00000451765.6:ENST00000676789.1:ENST00000678741.1:ENST00000404992.6:ENST00000406957.5:ENST00000443240.5:ENST00000420673.6:ENST00000481214.1:ENST00000449444.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	22	239	2	1.30569	1.930875	2.55606	0.0221209	0.00226642	0.123903	0.0425751
chr5	154816435	154816532	2527643	0	+	0.515464	(0.515,0.57]	chr5	241713	25	UTR3	UTR3:EXON_MRNA	LARP1	ENSG00000155506.19	ENST00000687700.1:ENST00000336314.9:ENST00000690816.1:ENST00000518297.6:ENST00000685946.1:ENST00000685355.1:ENST00000688232.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	53	2	1.28871	1.930845	2.57298	0.0731249	0.00506495	0.189597	0.0646039
chrX	71412433	71412533	7678708	0	+	0.3	(0.28,0.32]	chrX	786269	39	INTRON	INTRON	TAF1	ENSG00000147133.17	ENST00000683202.1:ENST00000373790.9:ENST00000423759.6:ENST00000683782.1:ENST00000683668.1:ENST00000276072.9:ENST00000463163.5:ENST00000373775.8:ENST00000485087.6:ENST00000437147.8:ENST00000683358.1:ENST00000682124.1:ENST00000461764.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	111	2	1.11992	1.930835	2.74175	0.0630467	0.00457205	0.196976	0.0595107
chr17	67237737	67237837	6825755	0	-	0.53	(0.515,0.57]	chr17	674543	186	INTRON	INTRON	HELZ	ENSG00000198265.12	ENST00000358691.10:ENST00000579953.5:ENST00000580168.5:ENST00000417253.7:ENST00000580662.5:ENST00000584641.5:ENST00000581159.5:ENST00000580963.1:ENST00000579861.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:non_stop_decay:nonsense_mediated_decay:processed_transcript	7	57	2	1.91916	1.93082	1.94248	0.0231902	0.0115668	0.118148	0.0962115
chr1	35185093	35185186	420516	0	-	0.301075	(0.28,0.32]	chr1	50656	1	INTRON	INTRON	SFPQ	ENSG00000116560.12	ENST00000470472.5:ENST00000460428.5:ENST00000696553.1:ENST00000357214.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	61	659	2	1.47458	1.930725	2.38687	0.0044847	1.98531e-4	0.0611706	0.0129178
chr22	26546039	26546135	7564623	0	-	0.354167	(0.35,0.378]	chr22	774034	10	INTRON	INTRON	TPST2	ENSG00000128294.16	ENST00000338754.9:ENST00000403880.5:ENST00000398110.6:ENST00000442495.5:ENST00000454778.5:ENST00000440953.5:ENST00000453117.1:ENST00000450022.1	protein_coding	protein_coding	protein_coding	protein_coding	5	53	2	1.92704	1.9306800000000002	1.93432	0.0481438	0.0228255	0.153019	0.125469
chr9	131178610	131178710	4216175	0	+	0.37	(0.35,0.378]	chr9	386629	2	SS5_PROX	SS5_PROX:INTRON	NUP214	ENSG00000126883.19	ENST00000695497.1:ENST00000695498.1:ENST00000695496.1:ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000525980.5:ENST00000526346.5:ENST00000531929.5:ENST00000651334.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	53	2	1.92704	1.9306800000000002	1.93432	0.0481438	0.0228255	0.153019	0.125469
chr5	69647668	69647768	2637210	0	-	0.51	(0.476,0.515]	chr5	250516	12	INTRON	INTRON	GUSBP3	ENSG00000253203.6	ENST00000513408.6:ENST00000509348.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	8	69	2	1.69758	1.930675	2.16377	0.0243026	0.0144542	0.12011	0.105087
chr11	86048782	86048882	5014640	0	-	0.38	(0.378,0.408]	chr11	473022	168	INTRON	INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000630913.2:ENST00000528398.5:ENST00000356360.9:ENST00000534412.5:ENST00000531558.1:ENST00000531930.5:ENST00000532041.5:ENST00000525162.5:ENST00000528256.1:ENST00000528411.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	20	190	2	1.90363	1.93058	1.95753	0.00464797	0.00113047	0.0600108	0.0308465
chr12	111595949	111596049	5413199	0	-	0.51	(0.476,0.515]	chr12	516941	312	INTRON	INTRON	ATXN2	ENSG00000204842.18	ENST00000642389.2:ENST00000608853.5:ENST00000672613.1:ENST00000673436.1:ENST00000643669.2:ENST00000616825.4:ENST00000389153.10:ENST00000550104.5:ENST00000483311.6:ENST00000672335.1:ENST00000673557.1:ENST00000673283.1:ENST00000673449.1:ENST00000535949.5:ENST00000542287.6:ENST00000644883.1:ENST00000647305.1:ENST00000671792.1:ENST00000392645.6:ENST00000672105.1:ENST00000549455.1:ENST00000548492.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	17	135	2	1.3762	1.93058	2.48496	0.0167965	0.00143091	0.110672	0.0340925
chr1	226182191	226182291	647013	0	-	0.41	(0.408,0.44]	chr1	76667	158	INTRON	INTRON	ACBD3	ENSG00000182827.9	ENST00000366812.6	protein_coding	protein_coding	protein_coding	protein_coding	7	64	2	1.85866	1.93047	2.00228	0.0389732	0.0106944	0.143072	0.091856
chr17	20856898	20856998	6742311	0	-	0.37	(0.35,0.378]	chr17	661963	194	INTRON	INTRON	CCDC144NL	ENSG00000205212.6	ENST00000539484.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	10	106	2	1.6599	1.93046	2.20102	0.0545616	0.00110896	0.165292	0.0305063
chr8	116869242	116869341	4034599	0	-	0.414141	(0.408,0.44]	chr8	368151	21	INTRON	INTRON	RAD21	ENSG00000164754.16	ENST00000297338.7:ENST00000517485.6:ENST00000519837.6:ENST00000522699.2:ENST00000687358.1:ENST00000520992.6:ENST00000517749.2:ENST00000685972.1:ENST00000687902.1:ENST00000523547.2:ENST00000686622.1:ENST00000688033.1:ENST00000689504.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	53	2	1.42102	1.93045	2.43988	0.0398236	0.0389354	0.160836	0.143072
chr10	31839004	31839104	4589416	0	-	0.37	(0.35,0.378]	chr10	423130	3	SS5_PROX	SS5_PROX:INTRON	ARHGAP12	ENSG00000165322.18	ENST00000344936.7:ENST00000375245.8:ENST00000396144.8:ENST00000375250.9:ENST00000311380.8:ENST00000497103.1:ENST00000454919.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	64	2	1.6599	1.9304299999999999	2.20096	0.0545616	0.0087123	0.165292	0.0844834
chrX	103679644	103679742	7856509	0	-	0.377551	(0.35,0.378]	chrX	801086	6	INTRON	INTRON	MORF4L2	ENSG00000123562.18	ENST00000360458.5:ENST00000441076.7:ENST00000433176.6:ENST00000451301.5:ENST00000434230.5:ENST00000418819.5:ENST00000442614.5:ENST00000492116.5:ENST00000422355.5:ENST00000474653.5:ENST00000498064.1:ENST00000467755.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	64	2	1.6599	1.9304299999999999	2.20096	0.0545616	0.0087123	0.165292	0.0844834
chr4	24554126	24554224	2118704	0	-	0.581633	(0.57,1]	chr4	209230	48	INTRON	INTRON	DHX15	ENSG00000109606.13	ENST00000336812.5	protein_coding	protein_coding	protein_coding	protein_coding	11	53	2	1.80787	1.9304100000000002	2.05295	0.0086124	0.00415403	0.0838082	0.0568824
chr16	11908018	11908118	6446332	0	-	0.52	(0.515,0.57]	chr16	621130	40	INTRON	INTRON	GSPT1	ENSG00000103342.13	ENST00000434724.7:ENST00000439887.6:ENST00000420576.6:ENST00000568849.5:ENST00000562169.1	protein_coding	protein_coding	protein_coding	protein_coding	7	57	2	1.63907	1.930365	2.22166	0.0350277	0.00735516	0.137535	0.0765982
chr7	157212697	157212797	3454693	0	+	0.34	(0.32,0.35]	chr7	322975	44	INTRON	INTRON	UBE3C	ENSG00000009335.18	ENST00000348165.10:ENST00000469336.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	13	144	2	1.85774	1.930355	2.00297	0.0061655	0.00606785	0.0712486	0.0676501
chr7	100468498	100468597	3586857	0	-	0.545455	(0.515,0.57]	chr7	334405	5	INTRON	INTRON	TSC22D4	ENSG00000166925.9	ENST00000496728.1:ENST00000300181.7:ENST00000393991.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	79	2	1.83953	1.9303	2.02107	0.00910188	0.00755489	0.0809976	0.0773151
chr17	47149030	47149129	6788974	0	-	0.333333	(0.32,0.35]	chr17	669573	47	INTRON	INTRON	CDC27	ENSG00000004897.12	ENST00000066544.8:ENST00000531206.5:ENST00000533415.5:ENST00000527547.5:ENST00000526866.5:ENST00000525495.6:ENST00000574304.5:ENST00000575830.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	79	2	1.437	1.93026	2.42352	0.0386366	0.0122807	0.159793	0.091087
chr18	36139936	36140024	6891525	0	+	0.511364	(0.476,0.515]	chr18	682986	3	SS5_PROX	SS5_PROX:INTRON	ELP2	ENSG00000134759.14	ENST00000543127.5:ENST00000544267.5:ENST00000351393.10:ENST00000545632.5:ENST00000442325.6:ENST00000358232.11:ENST00000423854.6:ENST00000539560.5:ENST00000542430.5:ENST00000350494.10:ENST00000542824.5:ENST00000540799.1:ENST00000543439.5:ENST00000540730.5:ENST00000540323.5:ENST00000536373.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	16	138	2	1.61094	1.9300700000000002	2.2492	0.0075315	0.00238578	0.0773151	0.0439909
chr16	29521675	29521775	6470782	0	-	0.5	(0.476,0.515]	chr16	625147	158	INTRON	INTRON	ENSG00000288632	ENSG00000288632.1	ENST00000675579.1	lncRNA	lncRNA	lncRNA	lncRNA	16	149	2	1.91116	1.9300549999999999	1.94895	0.00341751	0.00325666	0.0524329	0.0517761
chr16	87393619	87393719	6416826	0	+	0.39	(0.378,0.408]	chr16	615617	3	SS5_PROX	SS5_PROX:INTRON	MAP1LC3B	ENSG00000140941.14	ENST00000650688.1:ENST00000570189.5:ENST00000565788.1:ENST00000268607.10:ENST00000564844.1:ENST00000564638.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	51	2	1.68393	1.930005	2.17608	0.0503034	0.0218783	0.156383	0.123836
chr8	97650381	97650481	3809121	0	+	0.49	(0.476,0.515]	chr8	352836	51	INTRON	INTRON	MTDH	ENSG00000147649.10	ENST00000336273.8:ENST00000519934.5:ENST00000522313.1	protein_coding	protein_coding	protein_coding	protein_coding	6	59	2	1.80284	1.92999	2.05714	0.033161	0.0156961	0.145899	0.101453
chr12	69241000	69241099	5163511	0	+	0.353535	(0.35,0.378]	chr12	488988	9	INTRON	INTRON	CPSF6	ENSG00000111605.18	ENST00000435070.7:ENST00000550075.5:ENST00000650046.1:ENST00000456847.7:ENST00000266679.8:ENST00000550987.5:ENST00000551516.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	84	2	1.84611	1.929945	2.01378	0.0204148	0.00952336	0.110862	0.0863913
chr3	185926006	185926100	1886479	0	-	0.361702	(0.35,0.378]	chr3	188627	4	SS3_PROX	SS3_PROX:INTRON	TRA2B	ENSG00000136527.19	ENST00000453386.7:ENST00000492417.5:ENST00000487615.5:ENST00000456380.5:ENST00000382191.4:ENST00000465245.1:ENST00000485530.5:ENST00000493864.1:ENST00000477939.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	56	2	1.90405	1.92992	1.95579	0.0482651	0.0234538	0.171852	0.11867
chr19	12699394	12699491	7141133	0	-	0.195876	[0,0.28]	chr19	720637	3	UTR3	UTR3:EXON_MRNA	TNPO2	ENSG00000105576.16	ENST00000425528.6:ENST00000356861.9	protein_coding	protein_coding	protein_coding	protein_coding	15	205	2	1.70538	1.9298849999999999	2.15439	0.00977975	0.00489176	0.0877296	0.060897
chr1	16330302	16330402	382398	0	-	0.48	(0.476,0.515]	chr1	44888	145	INTRON	INTRON	FBXO42	ENSG00000037637.11	ENST00000375592.8	protein_coding	protein_coding	protein_coding	protein_coding	8	74	2	1.84346	1.9298199999999999	2.01618	0.0180082	0.0114152	0.106756	0.095586
chr1	21700997	21701097	396012	0	-	0.49	(0.476,0.515]	chr1	47218	1	SS5_PROX	SS5_PROX:INTRON	USP48	ENSG00000090686.16	ENST00000400301.5:ENST00000308271.14:ENST00000374732.7:ENST00000529637.5:ENST00000464577.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	74	2	1.84346	1.9298199999999999	2.01618	0.0180082	0.0114152	0.106756	0.095586
chr16	70272072	70272172	6510316	0	-	0.36	(0.35,0.378]	chr16	630584	1	SS3_PROX	SS3_PROX:INTRON	AARS1	ENSG00000090861.17	ENST00000674963.1:ENST00000675643.1:ENST00000675917.1:ENST00000674691.1:ENST00000261772.13:ENST00000675569.1:ENST00000676209.1:ENST00000676211.1:ENST00000676040.1:ENST00000675953.1:ENST00000675691.1:ENST00000676004.1:ENST00000675270.1:ENST00000675403.1:ENST00000676212.1:ENST00000675045.1:ENST00000675035.1:ENST00000676168.1:ENST00000674652.1:ENST00000675133.1:ENST00000675120.1:ENST00000674811.1:ENST00000674512.1:ENST00000675853.1:ENST00000565361.3:ENST00000676247.1:ENST00000674848.1:ENST00000674962.1:ENST00000675371.1:ENST00000675986.1:ENST00000674768.1:ENST00000675297.1:ENST00000675751.1:ENST00000564359.6:ENST00000675338.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	83	2	1.7942	1.92975	2.0653	0.0378648	0.00473276	0.141212	0.0633849
chr17	58005314	58005405	6800031	0	-	0.285714	(0.28,0.32]	chr17	671426	4	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ENSG00000266086:SRSF1	ENSG00000266086.3:ENSG00000136450.13	ENST00000578794.2:ENST00000258962.5:ENST00000582730.6:ENST00000584668.5:ENST00000581979.5:ENST00000584773.5:ENST00000585096.1:ENST00000583741.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	27	321	2	1.74661	1.92971	2.11281	0.00696664	4.74315e-4	0.0718189	0.0196887
chr3	172775910	172776009	1563480	0	+	0.383838	(0.378,0.408]	chr3	161783	15	INTRON	INTRON	ECT2	ENSG00000114346.14	ENST00000232458.9:ENST00000540509.5:ENST00000392692.8:ENST00000417960.5:ENST00000441497.6:ENST00000444250.1	protein_coding	protein_coding	protein_coding	protein_coding	8	73	2	1.8004	1.929685	2.05897	0.0339294	0.0096453	0.134508	0.0870523
chr1	27472598	27472698	406589	0	-	0.48	(0.476,0.515]	chr1	48986	433	INTRON	INTRON	WASF2	ENSG00000158195.11	ENST00000618852.5:ENST00000536657.1	protein_coding	protein_coding	protein_coding	protein_coding	8	74	2	1.61324	1.9296799999999998	2.24612	0.026684	0.00799949	0.134419	0.0766625
chr11	5304977	5305071	4896259	0	-	0.510638	(0.476,0.515]	chr11	459150	1	INTRON	INTRON	HBG2:ENSG00000239920:HBE1:OR51B5	ENSG00000196565.15:ENSG00000239920.2:ENSG00000213931.7:ENSG00000167355.8	ENST00000380252.6:ENST00000380259.7:ENST00000646569.1:ENST00000643199.1:ENST00000292896.3:ENST00000380237.5:ENST00000420726.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	76	2	1.82595	1.9296600000000002	2.03337	0.0202339	0.00851546	0.109955	0.0833995
chr16	11901727	11901827	6446268	0	-	0.51	(0.476,0.515]	chr16	621128	33	INTRON	INTRON	GSPT1	ENSG00000103342.13	ENST00000434724.7:ENST00000439887.6:ENST00000420576.6:ENST00000568849.5:ENST00000562169.1	protein_coding	protein_coding	protein_coding	protein_coding	6	58	2	1.7425	1.9296449999999998	2.11679	0.0417334	0.0115627	0.147007	0.0962115
chr2	182989386	182989486	1285530	0	-	0.27	[0,0.28]	chr2	135393	2	SS3_PROX	SS3_PROX:INTRON	NCKAP1	ENSG00000061676.15	ENST00000361354.9:ENST00000360982.2	protein_coding	protein_coding	protein_coding	protein_coding	6	69	2	1.47169	1.92963	2.38757	0.0552962	0.0479607	0.171039	0.165463
chr11	47423745	47423845	4949459	0	-	0.5	(0.476,0.515]	chr11	464109	3	SS5_PROX	SS5_PROX:INTRON	PSMC3	ENSG00000165916.9	ENST00000619920.4:ENST00000602866.5:ENST00000298852.8:ENST00000530912.5:ENST00000524447.6:ENST00000531051.6:ENST00000530651.5:ENST00000530887.5:ENST00000527906.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	58	2	1.83961	1.92957	2.01953	0.0314489	0.0163662	0.13151	0.109586
chr8	102390395	102390495	4012533	0	-	0.49	(0.476,0.515]	chr8	367237	284	INTRON	INTRON	UBR5	ENSG00000104517.13	ENST00000520539.6:ENST00000220959.8:ENST00000521922.5	protein_coding	protein_coding	protein_coding	protein_coding	6	58	2	1.83961	1.92957	2.01953	0.0314489	0.0163662	0.13151	0.109586
chr15	92906106	92906206	6103750	0	+	0.36	(0.35,0.378]	chr15	581399	7	INTRON	INTRON	ENSG00000279765:CHD2	ENSG00000279765.3:ENSG00000173575.22	ENST00000629685.2:ENST00000630790.1:ENST00000626874.2:ENST00000394196.9:ENST00000635856.1:ENST00000420239.7:ENST00000628375.2:ENST00000625990.3:ENST00000626782.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	13	114	2	1.21688	1.929545	2.64221	0.0431114	0.00186959	0.162255	0.0390476
chr7	155707580	155707680	3452535	0	+	0.26	[0,0.28]	chr7	322689	2	SS5_PROX	SS5_PROX:INTRON	RBM33	ENSG00000184863.11	ENST00000401878.8:ENST00000307403.6:ENST00000440108.5:ENST00000392761.3:ENST00000486747.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	12	165	2	1.87493	1.929475	1.98402	0.0120813	0.00729769	0.0907287	0.0761434
chr15	28266474	28266573	6123494	0	-	0.383838	(0.378,0.408]	chr15	583343	1	INTRON	INTRON	HERC2	ENSG00000128731.18	ENST00000261609.13:ENST00000564734.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	42	2	1.88729	1.92936	1.97143	0.0532327	0.0398704	0.162538	0.161534
chr20	47502519	47502618	7281003	0	+	0.40404	(0.378,0.408]	chr20	740469	1	INTRON	INTRON	NCOA3	ENSG00000124151.19	ENST00000371998.8:ENST00000372004.7:ENST00000371997.3	protein_coding	protein_coding	protein_coding	protein_coding	4	42	2	1.88729	1.92936	1.97143	0.0532327	0.0398704	0.162538	0.161534
chr11	243242	243341	4718099	0	+	0.383838	(0.378,0.408]	chr11	435646	38	INTRON	INTRON	PSMD13	ENSG00000185627.19	ENST00000529372.5:ENST00000532097.6:ENST00000431206.6:ENST00000534590.5:ENST00000528906.5:ENST00000525665.5:ENST00000527047.5:ENST00000352303.9:ENST00000382671.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	59	2	1.88729	1.929345	1.9714	0.0532327	0.0109363	0.162538	0.0924799
chr6	85622281	85622381	3151238	0	-	0.52	(0.515,0.57]	chr6	293878	4	SS5_PROX	SS5_PROX:INTRON	ENSG00000271793:SYNCRIP	ENSG00000271793.2:ENSG00000135316.19	ENST00000682083.1:ENST00000683074.1:ENST00000681965.1:ENST00000682504.1:ENST00000682106.1:ENST00000683364.1:ENST00000683436.1:ENST00000684220.1:ENST00000683909.1:ENST00000684462.1:ENST00000616122.5:ENST00000678528.1:ENST00000676637.1:ENST00000677771.1:ENST00000355238.11:ENST00000678878.1:ENST00000677481.1:ENST00000677646.1:ENST00000676630.1:ENST00000678618.1:ENST00000676542.1:ENST00000677059.1:ENST00000444272.2:ENST00000678899.1:ENST00000369622.8:ENST00000678355.1:ENST00000676688.1:ENST00000677514.1:ENST00000678816.1:ENST00000678930.1:ENST00000678589.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	19	148	2	1.47855	1.9293200000000001	2.38009	0.0138756	2.02074e-4	0.0954466	0.0124395
chr16	202918	203018	6425917	0	-	0.48	(0.476,0.515]	chr16	617421	33	INTRON	INTRON	LUC7L	ENSG00000007392.17	ENST00000337351.8:ENST00000426094.5:ENST00000397783.5:ENST00000629543.2:ENST00000490762.5:ENST00000293872.13:ENST00000429378.5:ENST00000464711.5:ENST00000419516.5:ENST00000397780.5:ENST00000495349.5:ENST00000418978.5:ENST00000430864.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	40	2	1.72558	1.9293099999999999	2.13304	0.0767648	0.024866	0.196164	0.132101
chr22	38497684	38497784	7588003	0	-	0.5	(0.476,0.515]	chr22	776750	2	SS5_PROX	SS5_PROX:INTRON	DDX17	ENSG00000100201.23	ENST00000403230.3:ENST00000396821.8:ENST00000216019.11:ENST00000432525.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	40	2	1.72558	1.9293099999999999	2.13304	0.0767648	0.024866	0.196164	0.132101
chr10	60787167	60787265	4435859	0	+	0.316327	(0.28,0.32]	chr10	409185	2	INTRON	INTRON	CDK1	ENSG00000170312.17	ENST00000519078.6:ENST00000316629.8:ENST00000395284.8:ENST00000448257.6:ENST00000373809.2	protein_coding	protein_coding	protein_coding	protein_coding	6	71	2	1.76061	1.929275	2.09794	0.0340483	0.0253826	0.134863	0.133676
chr19	38681820	38681920	7066070	0	+	0.49	(0.476,0.515]	chr19	705486	332	INTRON	INTRON	ACTN4	ENSG00000130402.13	ENST00000252699.7:ENST00000588618.5:ENST00000440400.2:ENST00000424234.7:ENST00000589528.1:ENST00000390009.7:ENST00000495553.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	68	2	1.27239	1.9292699999999998	2.58615	0.0651036	0.00515536	0.179712	0.0650394
chr14	55048010	55048109	5725354	0	+	0.484848	(0.476,0.515]	chr14	543368	38	UTR3	UTR3:EXON_MRNA	SOCS4	ENSG00000180008.9	ENST00000395472.2:ENST00000555846.2:ENST00000339298.2	protein_coding	protein_coding	protein_coding	protein_coding	4	40	2	1.86492	1.9291649999999998	1.99341	0.0550347	0.037389	0.165463	0.155878
chr19	34375602	34375702	7052591	0	+	0.5	(0.476,0.515]	chr19	703374	65	INTRON	INTRON	GPI	ENSG00000105220.17	ENST00000415930.8:ENST00000588991.7:ENST00000592144.5:ENST00000590375.5:ENST00000356487.11:ENST00000589399.6:ENST00000591204.5:ENST00000589640.5:ENST00000647446.1:ENST00000586425.2:ENST00000643067.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	40	2	1.86492	1.9291649999999998	1.99341	0.0550347	0.037389	0.165463	0.155878
chr7	107602969	107603067	3379139	0	+	0.489796	(0.476,0.515]	chr7	316473	21	INTRON	INTRON	DUS4L-BCAP29:BCAP29	ENSG00000288558.2:ENSG00000075790.12	ENST00000673689.1:ENST00000673720.1:ENST00000673780.1:ENST00000673709.1:ENST00000673970.1:ENST00000674049.1:ENST00000673992.1:ENST00000673665.1:ENST00000674062.1:ENST00000673784.1:ENST00000673757.1:ENST00000005259.9:ENST00000465919.5:ENST00000494086.5:ENST00000482371.5:ENST00000445771.6:ENST00000442065.5:ENST00000457837.5:ENST00000379117.6:ENST00000379119.6:ENST00000491150.5:ENST00000436699.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	40	2	1.86492	1.9291649999999998	1.99341	0.0550347	0.037389	0.165463	0.155878
chr9	130702310	130702402	4213800	0	+	0.478261	(0.476,0.515]	chr9	386409	1	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	EXOSC2	ENSG00000130713.17	ENST00000491115.7:ENST00000686102.1:ENST00000691284.1:ENST00000685137.1:ENST00000495699.3:ENST00000688967.1:ENST00000691104.1:ENST00000691926.1:ENST00000693435.1:ENST00000688258.1:ENST00000372358.10:ENST00000546165.6:ENST00000372352.7:ENST00000687420.1:ENST00000693011.1:ENST00000687051.1:ENST00000691425.1:ENST00000693610.1:ENST00000692794.1:ENST00000689890.1:ENST00000372351.7:ENST00000685277.1:ENST00000688364.1:ENST00000689662.1:ENST00000430138.7:ENST00000467138.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	40	2	1.86492	1.9291649999999998	1.99341	0.0550347	0.037389	0.165463	0.155878
chr20	43683484	43683583	7276222	0	+	0.424242	(0.408,0.44]	chr20	739735	2	INTRON	INTRON	MYBL2	ENSG00000101057.16	ENST00000396863.8:ENST00000217026.5	protein_coding	protein_coding	protein_coding	protein_coding	7	68	2	1.7743	1.92903	2.08376	0.0244755	0.0129886	0.12011	0.0991656
chr15	38259399	38259498	5998416	0	+	0.484848	(0.476,0.515]	chr15	570198	58	INTRON	INTRON	SPRED1	ENSG00000166068.13	ENST00000299084.9:ENST00000561205.1:ENST00000561317.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	92	2	1.69492	1.9289900000000002	2.16306	0.0127656	0.00973468	0.0926667	0.0877284
chr12	123294607	123294707	5444473	0	-	0.21	[0,0.28]	chr12	520952	56	UTR3	UTR3:EXON_MRNA	SBNO1	ENSG00000139697.14	ENST00000602398.3:ENST00000267176.8:ENST00000420886.6	protein_coding	protein_coding	protein_coding	protein_coding	43	552	2	1.69228	1.92895	2.16562	0.00270464	0.00134454	0.0479872	0.0336321
chr11	3757296	3757395	4894760	0	-	0.525253	(0.515,0.57]	chr11	458876	35	INTRON	INTRON	NUP98	ENSG00000110713.17	ENST00000359171.8:ENST00000324932.12:ENST00000650171.1:ENST00000355260.7:ENST00000397004.8:ENST00000397007.8:ENST00000527104.5:ENST00000529379.1:ENST00000397013.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	85	2	1.62864	1.928855	2.22907	0.0137628	0.00383939	0.10247	0.0542786
chr1	22056601	22056701	42240	0	+	0.4	(0.378,0.408]	chr1	5072	4	INTRON	INTRON	ENSG00000289694:CDC42	ENSG00000289694.1:ENSG00000070831.18	ENST00000695855.1:ENST00000695856.1:ENST00000344548.8:ENST00000400259.5:ENST00000667384.2:ENST00000411827.2:ENST00000695858.1:ENST00000695857.1:ENST00000315554.14:ENST00000695859.1:ENST00000498236.1:ENST00000656825.1:ENST00000651171.1:ENST00000652582.1:ENST00000695860.1:ENST00000695796.1:ENST00000695797.1:ENST00000662562.2:ENST00000695798.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	38	2	1.72045	1.9287400000000001	2.13703	0.0797592	0.0424671	0.19979	0.161763
chr4	39756437	39756536	1953577	0	+	0.50505	(0.476,0.515]	chr4	195648	3	INTRON	INTRON	UBE2K	ENSG00000078140.14	ENST00000510934.5:ENST00000261427.10:ENST00000438068.6:ENST00000513231.5:ENST00000503368.5:ENST00000445950.2:ENST00000510719.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	74	2	1.52278	1.92869	2.3346	0.0384487	0.00494807	0.142348	0.0646039
chr10	131970011	131970099	4715773	0	-	0.511364	(0.476,0.515]	chr10	435200	1	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	BNIP3	ENSG00000176171.12	ENST00000368636.9:ENST00000540159.4:ENST00000633835.2	protein_coding	protein_coding	protein_coding	protein_coding	9	82	2	1.88327	1.928645	1.97402	0.0206778	0.00672673	0.110999	0.0738715
chr6	10782974	10783074	2811032	0	+	0.44	(0.408,0.44]	chr6	264506	124	INTRON	INTRON	TMEM14B	ENSG00000137210.14	ENST00000463448.5:ENST00000473166.5:ENST00000460341.5:ENST00000473807.5:ENST00000463100.5:ENST00000478732.1:ENST00000467229.1:ENST00000489137.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	7	63	2	1.35739	1.9286100000000002	2.49983	0.063317	0.00713527	0.177047	0.0756118
chr5	28870630	28870730	2330456	0	+	0.37	(0.35,0.378]	chr5	225135	601	INTRON	INTRON	LINC02109	ENSG00000259786.7	ENST00000658190.1	lncRNA	lncRNA	lncRNA	lncRNA	24	245	2	1.83725	1.92861	2.01997	0.00313118	0.0010383	0.0499561	0.0295729
chr22	21673312	21673412	7482524	0	+	0.66	(0.57,1]	chr22	763336	4	SS3_PROX	SS3_PROX:INTRON	PPIL2	ENSG00000100023.20	ENST00000679795.1:ENST00000679540.1:ENST00000679580.1:ENST00000681286.1:ENST00000680061.1:ENST00000681338.1:ENST00000681956.1:ENST00000679827.1:ENST00000679534.1:ENST00000679479.1:ENST00000680393.1:ENST00000680463.1:ENST00000680426.1:ENST00000335025.12:ENST00000498109.2:ENST00000496819.2:ENST00000398831.8:ENST00000681394.1:ENST00000679477.1:ENST00000626352.2:ENST00000417788.5:ENST00000458567.5:ENST00000681791.1:ENST00000679692.1:ENST00000680962.1:ENST00000679857.1:ENST00000679586.1:ENST00000680094.1:ENST00000484439.5:ENST00000680434.1:ENST00000680109.1:ENST00000406385.1:ENST00000680022.1:ENST00000681137.1:ENST00000680860.1:ENST00000680183.1:ENST00000485930.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	49	2	1.80424	1.928595	2.05295	0.0129439	0.00415403	0.0991015	0.0568824
chr2	167818829	167818929	1257988	0	-	0.41	(0.408,0.44]	chr2	133322	32	INTRON	INTRON	B3GALT1-AS1	ENSG00000235335.3	ENST00000430546.2:ENST00000657553.1:ENST00000670221.1:ENST00000436982.2	lncRNA	lncRNA	lncRNA	lncRNA	6	56	2	1.49523	1.92854	2.36185	0.0534846	0.0133164	0.180041	0.094512
chr12	50449386	50449485	5136831	0	+	0.343434	(0.32,0.35]	chr12	484418	74	INTRON	INTRON	LARP4	ENSG00000161813.23	ENST00000293618.12:ENST00000429001.7:ENST00000398473.7:ENST00000522085.5:ENST00000518444.5:ENST00000518561.5:ENST00000347328.9:ENST00000520064.2:ENST00000521120.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	91	2	1.29183	1.928515	2.5652	0.0438084	0.00765724	0.162255	0.075364
chr7	111365775	111365875	3622140	0	-	0.39	(0.378,0.408]	chr7	337093	4019	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	71	2	1.6165	1.92849	2.24048	0.0374185	0.00867536	0.155878	0.0787771
chr12	50458942	50459041	5136931	0	+	0.333333	(0.32,0.35]	chr12	484429	41	INTRON	INTRON	LARP4	ENSG00000161813.23	ENST00000293618.12:ENST00000429001.7:ENST00000398473.7:ENST00000522085.5:ENST00000518444.5:ENST00000518561.5:ENST00000347328.9:ENST00000520064.2	protein_coding	protein_coding	protein_coding	protein_coding	4	47	2	1.77704	1.928445	2.07985	0.0719969	0.0303092	0.187322	0.143025
chr15	38484757	38484855	5999717	0	+	0.336735	(0.32,0.35]	chr15	570289	2	UTR3	UTR3:EXON_MRNA	FAM98B	ENSG00000171262.11	ENST00000397609.6	protein_coding	protein_coding	protein_coding	protein_coding	4	47	2	1.77704	1.928445	2.07985	0.0719969	0.0303092	0.187322	0.143025
chrX	155239141	155239241	7740771	0	+	0.39	(0.378,0.408]	chrX	792602	4	UTR3	UTR3:EXON_MRNA	VBP1	ENSG00000155959.12	ENST00000625964.2:ENST00000286428.7	protein_coding	protein_coding	protein_coding	protein_coding	8	82	2	1.76	1.9284400000000002	2.09688	0.023484	0.00805155	0.128531	0.0766625
chr10	69325451	69325551	4445942	0	+	0.49	(0.476,0.515]	chr10	410222	59	INTRON	INTRON	HK1	ENSG00000156515.24	ENST00000436817.6:ENST00000360289.6:ENST00000448642.6:ENST00000480047.5:ENST00000450646.6:ENST00000483077.5:ENST00000464803.6:ENST00000476368.6:ENST00000643399.2:ENST00000483054.5:ENST00000421088.5:ENST00000298649.8:ENST00000359426.7:ENST00000493591.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	49	2	1.79187	1.9283899999999998	2.06491	0.0362169	0.0304733	0.143385	0.138959
chr4	39743962	39744061	1953451	0	+	0.494949	(0.476,0.515]	chr4	195636	61	INTRON	INTRON	UBE2K	ENSG00000078140.14	ENST00000510934.5:ENST00000261427.10:ENST00000438068.6:ENST00000513231.5:ENST00000503368.5:ENST00000445950.2:ENST00000510719.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	12	98	2	1.29349	1.9282	2.56291	0.0361705	0.00222582	0.152712	0.0421176
chrX	48522252	48522352	7658418	0	+	0.46	(0.44,0.476]	chrX	783760	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	EBP	ENSG00000147155.11	ENST00000276096.10:ENST00000498425.1:ENST00000495186.6:ENST00000446158.5:ENST00000414061.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	86	2	1.38203	1.9282	2.47437	0.058781	0.00117531	0.167915	0.0316592
chr11	61966077	61966159	4958189	0	-	0.463415	(0.44,0.476]	chr11	466167	1	INTRON	INTRON	FTH1	ENSG00000167996.16	ENST00000529191.5:ENST00000529631.5:ENST00000530019.5:ENST00000273550.12:ENST00000534180.1:ENST00000532829.5:ENST00000620041.4:ENST00000526640.5:ENST00000532601.1:ENST00000534719.1:ENST00000533138.1:ENST00000529548.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	113	2	1.80093	1.928195	2.05546	0.00849213	0.00467486	0.0778801	0.0631417
chr6	147323365	147323464	2989913	0	+	0.464646	(0.44,0.476]	chr6	280084	66	INTRON	INTRON	STXBP5	ENSG00000164506.15	ENST00000321680.11:ENST00000367481.7:ENST00000367480.7	protein_coding	protein_coding	protein_coding	protein_coding	12	113	2	1.80093	1.928195	2.05546	0.00849213	0.00467486	0.0778801	0.0631417
chr7	72909571	72909671	3330094	0	+	0.42	(0.408,0.44]	chr7	309565	181	INTRON	INTRON	POM121	ENSG00000196313.13	ENST00000627934.3:ENST00000395270.5	protein_coding	protein_coding	protein_coding	protein_coding	23	209	2	1.49896	1.928175	2.35739	0.0112682	2.0772e-4	0.0884605	0.0125712
chr8	102365422	102365522	4012283	0	-	0.4	(0.378,0.408]	chr8	367237	34	INTRON	INTRON	UBR5	ENSG00000104517.13	ENST00000520539.6:ENST00000220959.8:ENST00000521922.5	protein_coding	protein_coding	protein_coding	protein_coding	8	82	2	1.58349	1.928165	2.27284	0.0653091	0.00173415	0.180158	0.03851
chr1	36295985	36296082	73659	0	+	0.484536	(0.476,0.515]	chr1	9418	17	INTRON	INTRON	THRAP3	ENSG00000054118.15	ENST00000469141.6:ENST00000648638.1:ENST00000354618.10	protein_coding	protein_coding	protein_coding	protein_coding	6	55	2	1.58842	1.9281549999999998	2.26789	0.0406588	0.0176567	0.161534	0.105233
chr12	112097941	112098040	5415320	0	-	0.50505	(0.476,0.515]	chr12	517255	1	INTRON	INTRON	NAA25	ENSG00000111300.10	ENST00000261745.9:ENST00000552527.5:ENST00000549711.5:ENST00000551858.1:ENST00000547133.1:ENST00000548627.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	55	2	1.58842	1.9281549999999998	2.26789	0.0406588	0.0176567	0.161534	0.105233
chr6	104790006	104790105	3171783	0	-	0.323232	(0.32,0.35]	chr6	295866	27	INTRON	INTRON	HACE1	ENSG00000085382.12	ENST00000262903.9:ENST00000416605.6:ENST00000369125.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	90	2	1.83295	1.9281100000000002	2.02327	0.0224097	0.00956045	0.11692	0.0863913
chr5	175528092	175528189	2551033	0	+	0.546392	(0.515,0.57]	chr5	243564	15	UTR3	UTR3:EXON_MRNA	SFXN1	ENSG00000164466.13	ENST00000321442.10	protein_coding	protein_coding	protein_coding	protein_coding	10	79	2	1.47127	1.928105	2.38494	0.0333563	0.00164178	0.134145	0.0373835
chr1	236897644	236897743	343554	0	+	0.313131	(0.28,0.32]	chr1	39994	1	UTR3	UTR3:EXON_MRNA	MTR	ENSG00000116984.15	ENST00000680454.1:ENST00000366577.10:ENST00000674797.2:ENST00000679569.1:ENST00000650888.1:ENST00000535889.6:ENST00000651455.1:ENST00000681937.1:ENST00000366576.3:ENST00000470570.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	159	2	1.75631	1.92805	2.09979	0.0101849	0.00472009	0.089002	0.0600445
chr22	20517086	20517185	7479442	0	+	0.444444	(0.44,0.476]	chr22	762951	83	INTRON	INTRON	MED15	ENSG00000099917.17	ENST00000445987.5:ENST00000444094.5:ENST00000414658.5:ENST00000486656.5:ENST00000433831.5:ENST00000432052.5:ENST00000292733.11:ENST00000263205.11:ENST00000477824.5:ENST00000406969.5:ENST00000382974.6:ENST00000441501.5:ENST00000438962.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	96	2	1.49531	1.92802	2.36073	0.0421587	0.00108744	0.148082	0.0301337
chr7	130093194	130093294	3413821	0	+	0.44	(0.408,0.44]	chr7	319098	220	INTRON	INTRON	KLHDC10	ENSG00000128607.14	ENST00000335420.10:ENST00000463413.1:ENST00000468226.1	protein_coding	protein_coding	protein_coding	protein_coding	14	120	2	1.12009	1.927975	2.73586	0.0634603	2.9686e-4	0.177059	0.0154293
chr9	133259220	133259318	4369868	0	-	0.540816	(0.515,0.57]	chr9	402050	7	INTRON	INTRON	ABO	ENSG00000175164.16	ENST00000679909.1:ENST00000453660.4:ENST00000647353.1:ENST00000611156.4:ENST00000538324.2:ENST00000651471.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	96	2	1.44512	1.9279700000000002	2.41082	0.0193997	0.00167359	0.119831	0.0370386
chr7	157231926	157232026	3454893	0	+	0.43	(0.408,0.44]	chr7	323002	2	INTRON	INTRON	UBE3C	ENSG00000009335.18	ENST00000348165.10:ENST00000470408.5:ENST00000494532.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	75	2	1.50652	1.9279600000000001	2.3494	0.0410276	0.00462504	0.1451	0.062717
chr16	212266	212366	6426016	0	-	0.5	(0.476,0.515]	chr16	617437	26	INTRON	INTRON	LUC7L	ENSG00000007392.17	ENST00000337351.8:ENST00000426094.5:ENST00000397783.5:ENST00000629543.2:ENST00000490762.5:ENST00000293872.13:ENST00000419516.5:ENST00000397780.5:ENST00000418978.5:ENST00000430864.5:ENST00000443357.5:ENST00000494366.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	12	111	2	1.41176	1.927845	2.44393	0.0355057	7.12759e-4	0.137673	0.0243332
chr5	168562996	168563094	2770553	0	-	0.306122	(0.28,0.32]	chr5	260729	11	INTRON	INTRON	PANK3	ENSG00000120137.7	ENST00000239231.7:ENST00000520504.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	14	122	2	1.0866	1.927715	2.76883	0.0601834	0.00414663	0.19107	0.0568239
chr11	14478097	14478194	4918102	0	-	0.28866000000000003	(0.28,0.32]	chr11	460913	7	INTRON	INTRON	COPB1	ENSG00000129083.13	ENST00000249923.7:ENST00000439561.7:ENST00000534234.5	protein_coding	protein_coding	protein_coding	protein_coding	8	87	2	1.59601	1.9276999999999997	2.25939	0.0236042	0.021772	0.12907	0.11491
chr15	44330987	44331087	6013492	0	+	0.44	(0.408,0.44]	chr15	572849	18	INTRON	INTRON	GOLM2	ENSG00000166734.20	ENST00000299957.11:ENST00000559222.5:ENST00000557945.5:ENST00000650436.1:ENST00000345795.6:ENST00000558735.1:ENST00000559037.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	41	2	1.85305	1.927665	2.00228	0.0543543	0.0389732	0.182243	0.143072
chr15	58995703	58995803	6038962	0	+	0.44	(0.408,0.44]	chr15	574972	69	INTRON	INTRON	RNF111	ENSG00000157450.16	ENST00000559757.1:ENST00000348370.9:ENST00000559160.1:ENST00000559209.5:ENST00000557998.5	protein_coding	protein_coding	protein_coding	protein_coding	4	41	2	1.85305	1.927665	2.00228	0.0543543	0.0389732	0.182243	0.143072
chr2	75926574	75926674	817425	0	+	0.43	(0.408,0.44]	chr2	91391	537	INTRON	INTRON	ENSG00000287474	ENSG00000287474.1	ENST00000670606.1	lncRNA	lncRNA	lncRNA	lncRNA	4	41	2	1.85305	1.927665	2.00228	0.0543543	0.0389732	0.182243	0.143072
chr20	58437069	58437168	7290028	0	+	0.434343	(0.408,0.44]	chr20	741690	20	INTRON	INTRON	VAPB	ENSG00000124164.16	ENST00000475243.6:ENST00000395802.7:ENST00000520497.1:ENST00000265619.6:ENST00000463370.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	41	2	1.85305	1.927665	2.00228	0.0543543	0.0389732	0.182243	0.143072
chr7	32878536	32878636	3515490	0	-	0.39	(0.378,0.408]	chr7	327774	30	INTRON	INTRON	KBTBD2	ENSG00000170852.12	ENST00000304056.9:ENST00000485611.5:ENST00000477129.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	70	2	1.46085	1.927645	2.39444	0.0343503	0.0122858	0.147468	0.091087
chr5	138348442	138348541	2494837	0	+	0.454545	(0.44,0.476]	chr5	238465	16	UTR3	UTR3:EXON_MRNA	FAM53C	ENSG00000120709.11	ENST00000239906.10	protein_coding	protein_coding	protein_coding	protein_coding	7	70	2	1.49942	1.92759	2.35576	0.0792118	0.00208591	0.199574	0.0424672
chrX	47195613	47195712	7655573	0	+	0.484848	(0.476,0.515]	chrX	783191	12	INTRON	INTRON	UBA1	ENSG00000130985.17	ENST00000377351.8:ENST00000412206.5:ENST00000427561.5:ENST00000335972.11:ENST00000442035.5:ENST00000457753.5	protein_coding	protein_coding	protein_coding	protein_coding	7	62	2	1.36967	1.92759	2.48551	0.0605132	0.00756632	0.171085	0.0773151
chr7	22701494	22701594	3500394	0	-	0.37	(0.35,0.378]	chr7	326683	361	INTRON	INTRON	STEAP1B	ENSG00000105889.16	ENST00000650428.1	protein_coding	processed_transcript	protein_coding	processed_transcript	7	68	2	1.71241	1.9275250000000002	2.14264	0.0274795	0.019274	0.123904	0.119831
chr3	37288112	37288200	1396207	0	+	0.488636	(0.476,0.515]	chr3	146351	1	INTRON	INTRON	GOLGA4	ENSG00000144674.17	ENST00000435830.6:ENST00000444882.5:ENST00000356847.8:ENST00000450863.6:ENST00000361924.7:ENST00000429018.5:ENST00000419177.3:ENST00000437131.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	17	158	2	1.66412	1.927525	2.19093	0.0116917	5.66074e-4	0.0892647	0.0217398
chr7	136104604	136104704	3431298	0	+	0.48	(0.476,0.515]	chr7	319905	112	INTRON	INTRON	ENSG00000232053	ENSG00000232053.7	ENST00000657456.1:ENST00000668062.1:ENST00000668668.1:ENST00000445293.6:ENST00000659747.1:ENST00000668896.1:ENST00000435996.1	lncRNA	lncRNA	lncRNA	lncRNA	9	72	2	1.27247	1.9275000000000002	2.58253	0.0520408	0.00600101	0.176908	0.0674604
chr1	155551968	155552068	562788	0	-	0.3	(0.28,0.32]	chr1	67117	300	INTRON	INTRON	ASH1L	ENSG00000116539.14	ENST00000676814.1:ENST00000392403.8:ENST00000368346.7:ENST00000677213.1:ENST00000678117.1:ENST00000679097.1:ENST00000679333.1:ENST00000679133.1:ENST00000548830.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	74	2	1.76293	1.9274550000000001	2.09198	0.0766478	0.00780964	0.196164	0.0788246
chr21	6986449	6986548	7425884	0	-	0.363636	(0.35,0.378]	chr21	757517	1	EXON_LNCRNA	EXON_LNCRNA	ENSG00000280018	ENSG00000280018.4	ENST00000623165.3	lncRNA	lncRNA	lncRNA	lncRNA	9	90	2	1.89908	1.927435	1.95579	0.0234538	0.00658205	0.11867	0.0737338
chr17	30121867	30121967	6587439	0	+	0.43	(0.408,0.44]	chr17	640557	33	INTRON	INTRON	NSRP1	ENSG00000126653.18	ENST00000540900.7:ENST00000584423.5:ENST00000612959.4:ENST00000247026.10:ENST00000577289.6:ENST00000584154.5:ENST00000394826.8:ENST00000479218.6:ENST00000475652.5:ENST00000584317.5:ENST00000583301.5:ENST00000585881.5:ENST00000467446.6:ENST00000580103.6:ENST00000581048.5:ENST00000588614.1:ENST00000589608.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	86	2	1.78592	1.9274	2.06888	0.0142075	0.00864911	0.103638	0.0787025
chr1	245879768	245879868	674421	0	-	0.35	(0.32,0.35]	chr1	79681	155	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000366517.5:ENST00000366516.5:ENST00000490107.6:ENST00000470510.5:ENST00000493441.5:ENST00000488153.5:ENST00000492487.5:ENST00000391836.3:ENST00000464398.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	65	2	1.54741	1.9273600000000002	2.30731	0.0473733	0.0176772	0.169265	0.10525
chr17	67071925	67072024	6824053	0	-	0.373737	(0.35,0.378]	chr17	674357	16	UTR3	UTR3:EXON_MRNA	HELZ	ENSG00000198265.12	ENST00000358691.10	protein_coding	protein_coding	protein_coding	protein_coding	9	93	2	1.8773	1.927295	1.97729	0.0184031	0.00688871	0.108834	0.0750118
chr6	143138989	143139089	2975967	0	+	0.37	(0.35,0.378]	chr6	279143	16	INTRON	INTRON	AIG1	ENSG00000146416.19	ENST00000367601.8:ENST00000447498.5:ENST00000646199.1:ENST00000357847.9:ENST00000629020.2:ENST00000275235.8:ENST00000494282.6:ENST00000458219.1	protein_coding	protein_coding	protein_coding	protein_coding	5	53	2	1.5118	1.92729	2.34278	0.0789277	0.0129593	0.198963	0.0991015
chr3	107535587	107535687	1469873	0	+	0.48	(0.476,0.515]	chr3	154137	88	INTRON	INTRON	BBX	ENSG00000114439.19	ENST00000415149.6:ENST00000402543.5:ENST00000325805.13:ENST00000485939.5:ENST00000427402.5:ENST00000416476.6:ENST00000454540.5:ENST00000449335.5:ENST00000431630.5:ENST00000458458.5:ENST00000456817.5:ENST00000456419.5:ENST00000402163.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	48	2	1.80284	1.92719	2.05154	0.0336015	0.033161	0.145899	0.134145
chr18	9106076	9106176	6868627	0	+	0.43	(0.408,0.44]	chr18	680510	7	INTRON	INTRON	NDUFV2	ENSG00000178127.13	ENST00000577703.1:ENST00000318388.11:ENST00000583375.5:ENST00000400033.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	17	127	2	1.40036	1.927155	2.45395	0.0137079	0.00366321	0.102281	0.0535094
chr22	47728133	47728230	7540331	0	+	0.329897	(0.32,0.35]	chr22	770725	35	INTRON	INTRON	ENSG00000224271	ENSG00000224271.7	ENST00000664761.1:ENST00000651071.1:ENST00000650683.1:ENST00000651536.1:ENST00000652499.1:ENST00000652656.1:ENST00000652072.1:ENST00000651445.1:ENST00000423737.5:ENST00000650660.1:ENST00000651056.1:ENST00000652611.1:ENST00000652399.1:ENST00000652123.1:ENST00000651311.1:ENST00000651458.1:ENST00000652505.1:ENST00000652702.2:ENST00000652334.1:ENST00000652030.2:ENST00000651403.1:ENST00000652228.1:ENST00000651124.1:ENST00000650972.1:ENST00000651985.1:ENST00000651637.1:ENST00000650924.1:ENST00000651003.1:ENST00000652168.1:ENST00000651948.2:ENST00000651293.1:ENST00000651939.1:ENST00000650787.1:ENST00000651517.1:ENST00000651662.1:ENST00000652690.1:ENST00000651638.1:ENST00000670853.1:ENST00000652750.1:ENST00000652080.1:ENST00000651294.1:ENST00000652164.1:ENST00000651538.1:ENST00000650775.1:ENST00000651983.1:ENST00000651033.1:ENST00000651584.1:ENST00000650884.1:ENST00000651270.1	lncRNA	lncRNA	lncRNA	lncRNA	7	80	2	1.83295	1.92714	2.02133	0.0224097	0.017146	0.11692	0.111072
chr22	23186816	23186915	7483266	0	+	0.50505	(0.476,0.515]	chr22	763531	42	INTRON	INTRON	BCR	ENSG00000186716.21	ENST00000479188.5:ENST00000359540.7:ENST00000305877.13	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	82	2	1.74317	1.92713	2.11109	0.0396373	0.00438713	0.161534	0.0585064
chr12	123204273	123204373	5443769	0	-	0.36	(0.35,0.378]	chr12	520832	5	INTRON	INTRON	MPHOSPH9	ENSG00000051825.15	ENST00000606320.6:ENST00000541076.6:ENST00000545556.6:ENST00000302373.8:ENST00000539024.5:ENST00000539336.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	73	2	1.87726	1.927115	1.97697	0.0297629	0.0109711	0.12908	0.092635
chr1	162591480	162591574	238624	0	+	0.468085	(0.44,0.476]	chr1	28740	6	INTRON	INTRON	UAP1	ENSG00000117143.14	ENST00000367925.6:ENST00000367926.9	protein_coding	protein_coding	protein_coding	protein_coding	9	85	2	1.79873	1.927095	2.05546	0.0223888	0.00467486	0.116918	0.0631417
chr5	54005511	54005611	2617859	0	-	0.5	(0.476,0.515]	chr5	248835	935	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	58	2	1.88582	1.9270749999999999	1.96833	0.0273268	0.0195007	0.123904	0.119967
chr21	37450144	37450244	7407063	0	+	0.43	(0.408,0.44]	chr21	754891	194	INTRON	INTRON	DYRK1A	ENSG00000157540.22	ENST00000646523.1:ENST00000647425.1:ENST00000647188.2:ENST00000647504.1:ENST00000644942.1:ENST00000338785.8:ENST00000643624.1:ENST00000643551.1:ENST00000426672.6:ENST00000398960.7:ENST00000646548.1:ENST00000645424.1:ENST00000643854.1:ENST00000455097.6:ENST00000642309.1:ENST00000645774.1:ENST00000398956.2	protein_coding	protein_coding	protein_coding	protein_coding	6	59	2	1.58763	1.9268999999999998	2.26617	0.0639217	0.00649402	0.177824	0.0734343
chr19	38652056	38652155	7065772	0	+	0.40404	(0.378,0.408]	chr19	705486	34	INTRON	INTRON	ACTN4	ENSG00000130402.13	ENST00000252699.7:ENST00000588618.5:ENST00000440400.2:ENST00000424234.7:ENST00000589528.1:ENST00000390009.7:ENST00000495553.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	64	2	1.45934	1.92689	2.39444	0.0442931	0.0122858	0.162302	0.091087
chr5	54010110	54010210	2617905	0	-	0.46	(0.44,0.476]	chr5	248835	981	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	121	2	1.9037	1.926655	1.94961	0.00735504	0.00356879	0.0739587	0.0548435
chr7	111310287	111310387	3621585	0	-	0.4	(0.378,0.408]	chr7	337093	3464	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	51	2	1.59317	1.9266299999999998	2.26009	0.0603812	0.0188651	0.19151	0.108861
chr4	55400051	55400150	1960630	0	+	0.575758	(0.57,1]	chr4	196546	4	INTRON	INTRON	TMEM165	ENSG00000134851.13	ENST00000381334.10:ENST00000506198.5:ENST00000508404.5:ENST00000511710.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	26	2	1.77365	1.926605	2.07956	0.0670385	0.013114	0.183051	0.0998629
chr8	23020815	23020912	3923450	0	-	0.628866	(0.57,1]	chr8	359060	8	UTR3	UTR3:EXON_MRNA	TNFRSF10B	ENSG00000120889.13	ENST00000276431.9:ENST00000523752.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	26	2	1.77365	1.926605	2.07956	0.0670385	0.013114	0.183051	0.0998629
chr21	46204039	46204139	7470615	0	-	0.5	(0.476,0.515]	chr21	761464	74	INTRON	INTRON	LSS	ENSG00000160285.15	ENST00000356396.8:ENST00000397728.8:ENST00000457828.6:ENST00000522411.5	protein_coding	protein_coding	protein_coding	protein_coding	17	144	2	1.25417	1.9265949999999998	2.59902	0.0336668	3.05324e-4	0.134145	0.0155972
chr7	32487067	32487163	3513462	0	-	0.354167	(0.35,0.378]	chr7	327611	19	UTR3	UTR3:EXON_MRNA	LSM5	ENSG00000106355.10	ENST00000450169.7:ENST00000409909.7:ENST00000409292.5:ENST00000223084.7:ENST00000409987.5:ENST00000410044.5:ENST00000468872.5:ENST00000409782.5:ENST00000409952.3:ENST00000480956.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	53	2	1.71046	1.9265500000000002	2.14264	0.0441269	0.0274795	0.162255	0.123904
chr11	32909403	32909503	4764877	0	+	0.42	(0.408,0.44]	chr11	440609	157	INTRON	INTRON	QSER1	ENSG00000060749.16	ENST00000650167.2:ENST00000399302.7:ENST00000527250.5	protein_coding	protein_coding	protein_coding	protein_coding	5	49	2	1.64062	1.9264999999999999	2.21238	0.0557275	0.0193525	0.165463	0.119831
chr6	158059537	158059637	3017799	0	+	0.42	(0.408,0.44]	chr6	281513	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	SYNJ2	ENSG00000078269.15	ENST00000355585.9:ENST00000640338.1:ENST00000638626.1:ENST00000485863.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	49	2	1.64062	1.9264999999999999	2.21238	0.0557275	0.0193525	0.165463	0.119831
chr16	21969862	21969959	6319714	0	+	0.412371	(0.408,0.44]	chr16	604998	8	INTRON	INTRON	UQCRC2	ENSG00000140740.11	ENST00000268379.9:ENST00000561553.5:ENST00000563898.5:ENST00000563711.5:ENST00000567810.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	95	2	1.76523	1.9264800000000002	2.08773	0.0174785	0.00404379	0.10482	0.0578376
chr6	17660160	17660259	3065735	0	-	0.282828	(0.28,0.32]	chr6	284824	79	INTRON	INTRON	NUP153	ENSG00000124789.12	ENST00000613258.4:ENST00000537253.5:ENST00000262077.3	protein_coding	protein_coding	protein_coding	protein_coding	14	145	2	1.62049	1.9263599999999999	2.23223	0.0109124	0.00895042	0.0873034	0.0849778
chr15	82512665	82512765	6247376	0	-	0.37	(0.35,0.378]	chr15	596152	344	INTRON	INTRON	GOLGA2P10	ENSG00000255769.7	ENST00000618004.4:ENST00000614347.4:ENST00000618267.4:ENST00000612379.4:ENST00000619738.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	4	44	2	1.87717	1.926335	1.9755	0.0555068	0.0398617	0.165463	0.161534
chr8	140528646	140528746	4075467	0	-	0.41	(0.408,0.44]	chr8	370170	86	UTR3	UTR3:EXON_MRNA	AGO2	ENSG00000123908.12	ENST00000220592.10	protein_coding	protein_coding	protein_coding	protein_coding	10	96	2	1.8937	1.926285	1.9588699999999999	0.00928733	0.00847845	0.0855292	0.0778146
chr2	20265153	20265252	1075910	0	-	0.585859	(0.57,1]	chr2	114960	13	INTRON	INTRON	PUM2	ENSG00000055917.16	ENST00000338086.9:ENST00000361078.7:ENST00000440577.5	protein_coding	protein_coding	protein_coding	protein_coding	17	77	2	1.45083	1.9262450000000002	2.40166	0.0131793	3.48732e-4	0.0940535	0.0166455
chr16	87865121	87865220	6539054	0	-	0.393939	(0.378,0.408]	chr16	633647	16	INTRON	INTRON	SLC7A5	ENSG00000103257.9	ENST00000261622.5	protein_coding	protein_coding	protein_coding	protein_coding	6	58	2	1.84831	1.926145	2.00398	0.0393906	0.0172621	0.143072	0.111749
chr22	38490656	38490756	7587925	0	-	0.44	(0.408,0.44]	chr22	776723	13	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	DDX17	ENSG00000100201.23	ENST00000403230.3:ENST00000396821.8:ENST00000216019.11:ENST00000475004.6:ENST00000432525.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	35	325	2	1.76783	1.92612	2.08441	0.00139199	5.20328e-4	0.0341261	0.020972
chr19	10164600	10164696	7134557	0	-	0.489583	(0.476,0.515]	chr19	719188	14	EXON_MRNA	EXON_MRNA:INTRON	DNMT1	ENSG00000130816.17	ENST00000340748.8:ENST00000359526.9:ENST00000592705.5:ENST00000679103.1:ENST00000677634.1:ENST00000676820.1:ENST00000677250.1:ENST00000677013.1:ENST00000677685.1:ENST00000677616.1:ENST00000676604.1:ENST00000678024.1:ENST00000676868.1:ENST00000677783.1:ENST00000676610.1:ENST00000678804.1:ENST00000679313.1:ENST00000677946.1:ENST00000589349.5:ENST00000591764.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	48	2	1.86014	1.9260549999999999	1.99197	0.039572	0.0277606	0.143072	0.137011
chr3	49292958	49293045	1693017	0	-	0.482759	(0.476,0.515]	chr3	173561	4	SS3_PROX	SS3_PROX:INTRON	USP4	ENSG00000114316.13	ENST00000265560.9:ENST00000351842.8:ENST00000485450.5:ENST00000431357.1:ENST00000475873.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	48	2	1.86014	1.9260549999999999	1.99197	0.039572	0.0277606	0.143072	0.137011
chrX	123961978	123962032	7716753	0	+	0.481481	(0.476,0.515]	chrX	789454	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	STAG2	ENSG00000101972.20	ENST00000394477.5:ENST00000218089.13:ENST00000455404.5:ENST00000483575.5:ENST00000687810.1:ENST00000687071.1:ENST00000469481.1:ENST00000458700.5:ENST00000371160.5:ENST00000435103.5:ENST00000687852.1:ENST00000371145.8:ENST00000692982.1:ENST00000371157.7:ENST00000691035.1:ENST00000686802.1:ENST00000691383.1:ENST00000686127.1:ENST00000371144.7:ENST00000458176.5:ENST00000466748.5:ENST00000471107.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	48	2	1.86014	1.9260549999999999	1.99197	0.039572	0.0277606	0.143072	0.137011
chr22	21862322	21862422	7561333	0	-	0.4	(0.378,0.408]	chr22	773388	541	INTRON	INTRON	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	22	211	2	1.69561	1.9260199999999998	2.15643	0.00614703	5.48286e-4	0.0676501	0.0213049
chr11	119006768	119006867	4874062	0	+	0.50505	(0.476,0.515]	chr11	455385	46	INTRON	INTRON	CENATAC	ENSG00000186166.9	ENST00000334418.6:ENST00000524670.5:ENST00000526463.5:ENST00000532132.5:ENST00000580556.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	48	2	1.74317	1.925955	2.10874	0.0396373	0.0285608	0.161534	0.12666
chr4	2502229	2502329	1912165	0	+	0.48	(0.476,0.515]	chr4	191953	11	INTRON	INTRON	RNF4	ENSG00000063978.16	ENST00000541204.5:ENST00000502316.5:ENST00000509388.5:ENST00000507247.5:ENST00000314289.13:ENST00000511843.5:ENST00000509258.5:ENST00000513284.5:ENST00000511859.5:ENST00000513643.5:ENST00000506706.5:ENST00000511600.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	48	2	1.74317	1.925955	2.10874	0.0396373	0.0285608	0.161534	0.12666
chr4	73204497	73204597	2160283	0	-	0.3	(0.28,0.32]	chr4	212794	266	INTRON	INTRON	ANKRD17	ENSG00000132466.20	ENST00000358602.9:ENST00000558247.5:ENST00000330838.10:ENST00000509867.6:ENST00000561029.1:ENST00000559367.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	72	2	1.91611	1.9259499999999998	1.93579	0.0539102	0.0139701	0.164153	0.10247
chr18	80046254	80046354	6938042	0	+	0.34	(0.32,0.35]	chr18	686181	2	UTR3	UTR3:EXON_MRNA	RBFA	ENSG00000101546.13	ENST00000306735.10:ENST00000262197.7:ENST00000593019.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	47	2	1.83416	1.92592	2.01768	0.0631198	0.0361337	0.176946	0.152563
chr19	8447209	8447309	7010786	0	+	0.33	(0.32,0.35]	chr19	696137	17	INTRON	INTRON	HNRNPM	ENSG00000099783.12	ENST00000348943.7:ENST00000597813.5:ENST00000600092.5:ENST00000325495.9:ENST00000600806.5:ENST00000620401.4:ENST00000594907.5:ENST00000596984.5:ENST00000601645.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	47	2	1.83416	1.92592	2.01768	0.0631198	0.0361337	0.176946	0.152563
chr7	23187932	23188032	3289690	0	+	0.3	(0.28,0.32]	chr7	305553	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	NUP42	ENSG00000136243.18	ENST00000485250.5:ENST00000438012.5:ENST00000410002.7:ENST00000258742.10:ENST00000487595.5:ENST00000413919.1:ENST00000437140.5:ENST00000486136.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	98	2	1.7305	1.9258950000000001	2.12129	0.0327022	0.00696605	0.133816	0.0754576
chr11	2957418	2957514	4891634	0	-	0.458333	(0.44,0.476]	chr11	458297	13	INTRON	INTRON	NAP1L4	ENSG00000205531.13	ENST00000620138.4:ENST00000380542.9:ENST00000526115.5:ENST00000492685.5:ENST00000528363.5:ENST00000483643.7:ENST00000528261.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	67	2	1.37831	1.92585	2.47339	0.0447298	0.0090196	0.163255	0.080367
chr16	85574345	85574445	6415575	0	+	0.58	(0.57,1]	chr16	615470	176	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	12	55	2	1.36164	1.925825	2.49001	0.0321033	8.49418e-4	0.145026	0.0267232
chr1	40161936	40162036	79968	0	+	0.55	(0.515,0.57]	chr1	10404	3	SS5_PROX	SS5_PROX:INTRON	RLF	ENSG00000117000.9	ENST00000372771.5	protein_coding	protein_coding	protein_coding	protein_coding	10	70	2	1.63886	1.925795	2.21273	0.0196151	0.0104151	0.109486	0.09017
chr20	50906541	50906639	7355628	0	-	0.397959	(0.378,0.408]	chr20	750095	11	INTRON	INTRON	ADNP	ENSG00000101126.18	ENST00000621696.5:ENST00000673732.1:ENST00000396029.8:ENST00000644386.1:ENST00000396032.8:ENST00000349014.8:ENST00000645081.1:ENST00000642364.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	93	2	1.46092	1.9257	2.39048	0.0314415	0.00395852	0.13151	0.057511
chr2	99412230	99412330	1189079	0	-	0.32	(0.28,0.32]	chr2	127625	1	SS5_PROX	SS5_PROX:INTRON	REV1	ENSG00000135945.10	ENST00000393445.7:ENST00000258428.8:ENST00000413697.5:ENST00000482595.5:ENST00000465835.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	62	2	1.56134	1.92566	2.28998	0.0740624	0.0166401	0.191153	0.110511
chr16	20683075	20683175	6316767	0	+	0.34	(0.32,0.35]	chr16	604566	10	INTRON	INTRON	ACSM3	ENSG00000005187.12	ENST00000568235.5:ENST00000501740.6:ENST00000561584.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	110	2	1.80306	1.925595	2.04813	0.0246393	0.00362627	0.12011	0.055479
chr8	43063207	43063305	3745917	0	+	0.44898	(0.44,0.476]	chr8	348521	37	INTRON	INTRON	FNTA	ENSG00000168522.13	ENST00000533559.5:ENST00000526755.5:ENST00000302279.8:ENST00000527153.5:ENST00000533383.5:ENST00000533998.5:ENST00000524546.5:ENST00000531266.5:ENST00000533368.1:ENST00000525699.5:ENST00000529687.5:ENST00000533336.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	74	2	1.66775	1.925595	2.18344	0.0219883	0.0102102	0.123836	0.0850389
chr8	23530202	23530300	3715109	0	+	0.581633	(0.57,1]	chr8	345213	6	INTRON	INTRON	SLC25A37	ENSG00000147454.14	ENST00000519973.6:ENST00000290075.10:ENST00000417331.6:ENST00000518881.5:ENST00000519192.1:ENST00000520654.1:ENST00000523930.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	45	2	1.54289	1.92557	2.30825	0.0196542	0.00499769	0.120063	0.0617433
chr8	105319181	105319281	3837245	0	+	0.69	(0.57,1]	chr8	354028	2	SS5_PROX	SS5_PROX:INTRON	ZFPM2	ENSG00000169946.14	ENST00000518180.1:ENST00000407775.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	45	2	1.54289	1.92557	2.30825	0.0196542	0.00499769	0.120063	0.0617433
chr19	34431059	34431159	7053144	0	+	0.44	(0.408,0.44]	chr19	703491	4	SS5_PROX	SS5_PROX:INTRON	UBA2	ENSG00000126261.13	ENST00000607361.5:ENST00000586313.1:ENST00000590048.6:ENST00000246548.9:ENST00000592841.5:ENST00000439527.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	75	2	1.92319	1.925545	1.9279	0.0247322	0.00807087	0.12011	0.0806514
chr4	73249783	73249883	2160737	0	-	0.45	(0.44,0.476]	chr4	212799	268	INTRON	INTRON	ANKRD17	ENSG00000132466.20	ENST00000358602.9:ENST00000558247.5:ENST00000330838.10:ENST00000561029.1	protein_coding	protein_coding	protein_coding	protein_coding	9	85	2	1.49531	1.925535	2.35576	0.0421587	0.00208591	0.148082	0.0424672
chr16	29526268	29526368	6470828	0	-	0.4	(0.378,0.408]	chr16	625147	204	INTRON	INTRON	ENSG00000288632	ENSG00000288632.1	ENST00000675579.1	lncRNA	lncRNA	lncRNA	lncRNA	8	80	2	1.56313	1.9255299999999997	2.28793	0.0474151	0.00291235	0.153019	0.0494641
chr9	37205436	37205536	4118511	0	+	0.35	(0.32,0.35]	chr9	375389	185	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000461038.5:ENST00000488607.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	122	2	1.36048	1.9255	2.49052	0.026668	0.00384313	0.134419	0.0542786
chr1	1860574	1860674	362536	0	-	0.52	(0.515,0.57]	chr1	42311	205	INTRON	INTRON	GNB1	ENSG00000078369.18	ENST00000610897.4:ENST00000615252.4:ENST00000378609.9:ENST00000439272.6:ENST00000434686.6:ENST00000472614.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	93	2	1.65052	1.925475	2.20043	0.0109048	0.00392045	0.0873034	0.0570863
chr19	45860400	45860500	7193837	0	-	0.42	(0.408,0.44]	chr19	728658	47	INTRON	INTRON	SYMPK	ENSG00000125755.19	ENST00000245934.12:ENST00000593504.5:ENST00000599460.5:ENST00000598896.5:ENST00000602061.5:ENST00000598059.5:ENST00000594293.5:ENST00000593959.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	82	2	1.42285	1.925465	2.42808	0.0421231	0.00331055	0.148082	0.0527031
chr4	102808967	102809067	2213167	0	-	0.28	[0,0.28]	chr4	216745	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	UBE2D3	ENSG00000109332.20	ENST00000453744.7:ENST00000394804.6:ENST00000618836.4:ENST00000394803.9:ENST00000394801.8:ENST00000343106.9:ENST00000508474.5:ENST00000503742.5:ENST00000321805.11:ENST00000350435.11:ENST00000338145.7:ENST00000349311.12:ENST00000504211.5:ENST00000357194.10:ENST00000505207.5:ENST00000507845.5:ENST00000502404.5:ENST00000508635.5:ENST00000505307.5:ENST00000510129.5:ENST00000508476.5:ENST00000502563.5:ENST00000508238.5:ENST00000514755.5:ENST00000508974.5:ENST00000502690.5:ENST00000510599.5:ENST00000508818.5:ENST00000503418.5:ENST00000508249.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	124	2	1.45089	1.9254000000000002	2.39991	0.0254516	0.0163416	0.133676	0.101571
chr12	122606013	122606112	5241437	0	+	0.464646	(0.44,0.476]	chr12	497848	2	INTRON	INTRON	KNTC1	ENSG00000184445.12	ENST00000450485.6:ENST00000333479.12:ENST00000436959.7:ENST00000546125.1	protein_coding	protein_coding	protein_coding	protein_coding	7	62	2	1.30125	1.925345	2.54944	0.0734119	0.00591346	0.190171	0.0694038
chr9	33975426	33975525	4245103	0	-	0.363636	(0.35,0.378]	chr9	390451	18	INTRON	INTRON	UBAP2	ENSG00000137073.24	ENST00000379238.7:ENST00000683659.1:ENST00000682239.1:ENST00000683140.1:ENST00000682209.1:ENST00000681980.1:ENST00000360802.6:ENST00000683252.1:ENST00000684158.1:ENST00000682914.1:ENST00000683717.1:ENST00000379239.9:ENST00000683084.1:ENST00000684754.1:ENST00000629575.2:ENST00000684298.1:ENST00000412543.6:ENST00000421278.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	53	2	1.56287	1.9252850000000001	2.2877	0.0697648	0.0155765	0.184298	0.109411
chr7	157375825	157375925	3455703	0	+	0.42	(0.408,0.44]	chr7	323102	37	INTRON	INTRON	DNAJB6	ENSG00000105993.15	ENST00000441561.5:ENST00000429029.6:ENST00000262177.9:ENST00000417758.5:ENST00000459889.5:ENST00000443280.5:ENST00000441291.5:ENST00000412557.5:ENST00000634080.1:ENST00000468928.5:ENST00000465908.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	56	2	1.40374	1.92524	2.44674	0.0721345	0.00868283	0.187433	0.0842798
chr1	27481291	27481391	406676	0	-	0.36	(0.35,0.378]	chr1	48986	520	INTRON	INTRON	WASF2	ENSG00000158195.11	ENST00000618852.5:ENST00000536657.1	protein_coding	protein_coding	protein_coding	protein_coding	7	73	2	1.83633	1.925055	2.01378	0.0335602	0.00952336	0.134145	0.0863913
chr1	38015159	38015259	74291	0	+	0.48	(0.476,0.515]	chr1	9592	19	INTRON	INTRON	UTP11	ENSG00000183520.12	ENST00000483182.5:ENST00000373014.5:ENST00000486563.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	56	2	1.58972	1.92503	2.26034	0.0427022	0.0166235	0.148082	0.110511
chr5	38939214	38939313	2604246	0	-	0.414141	(0.408,0.44]	chr5	247703	14	UTR3	UTR3:EXON_MRNA	RICTOR	ENSG00000164327.13	ENST00000357387.8	protein_coding	protein_coding	protein_coding	protein_coding	5	49	2	1.81572	1.9250150000000001	2.03431	0.0626779	0.0154896	0.175915	0.108998
chr1	44776140	44776240	92628	0	+	0.66	(0.57,1]	chr1	12358	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPS8	ENSG00000142937.12	ENST00000497035.5:ENST00000396651.8:ENST00000372209.3:ENST00000470475.1:ENST00000485390.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	14	65	2	1.69107	1.924985	2.1589	0.00609159	0.00252118	0.0676501	0.0465056
chr22	21862622	21862722	7561336	0	-	0.44	(0.408,0.44]	chr22	773388	544	INTRON	INTRON	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	11	105	2	1.85567	1.92482	1.99397	0.0090746	0.00610802	0.080809	0.0706941
chr8	23556108	23556208	3715371	0	+	0.44	(0.408,0.44]	chr8	345227	125	INTRON	INTRON	SLC25A37	ENSG00000147454.14	ENST00000519973.6:ENST00000290075.10:ENST00000417331.6:ENST00000518881.5:ENST00000520654.1:ENST00000523930.1:ENST00000523883.5:ENST00000517923.1:ENST00000520949.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	67	2	1.87977	1.92475	1.96973	0.0282738	0.0108773	0.125825	0.0923273
chr1	41185892	41185983	430263	0	-	0.384615	(0.378,0.408]	chr1	52249	4	SS5_PROX	SS5_PROX:INTRON	SCMH1	ENSG00000010803.17	ENST00000695335.1:ENST00000372596.5:ENST00000372597.5:ENST00000337495.9:ENST00000695336.1	protein_coding	protein_coding	protein_coding	protein_coding	8	77	2	1.78414	1.9247450000000002	2.06535	0.0159849	0.0144669	0.105142	0.101453
chr3	48933503	48933603	1421601	0	+	0.4	(0.378,0.408]	chr3	149480	53	INTRON	INTRON	ARIH2	ENSG00000177479.20	ENST00000478224.5:ENST00000430423.5:ENST00000452882.5:ENST00000498314.5:ENST00000474618.5:ENST00000449376.5:ENST00000490095.5:ENST00000356401.9:ENST00000495761.5:ENST00000483333.5:ENST00000482427.5:ENST00000488963.5:ENST00000420814.5:ENST00000486316.5:ENST00000474936.6:ENST00000484999.5:ENST00000470296.5:ENST00000463204.5:ENST00000452385.5:ENST00000495507.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	77	2	1.78414	1.9247450000000002	2.06535	0.0159849	0.0144669	0.105142	0.101453
chr5	32134475	32134575	2597115	0	-	0.39	(0.378,0.408]	chr5	246732	75	INTRON	INTRON	GOLPH3	ENSG00000113384.14	ENST00000265070.7:ENST00000503610.5:ENST00000512668.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	13	127	2	1.46092	1.9247299999999998	2.38854	0.0314415	5.74431e-4	0.13151	0.0217621
chr4	459101	459201	2092770	0	-	0.46	(0.44,0.476]	chr4	206783	143	INTRON	INTRON	ABCA11P:ZNF721	ENSG00000251595.7:ENSG00000182903.16	ENST00000451020.6:ENST00000514396.5:ENST00000507854.1:ENST00000515578.5:ENST00000506646.5:ENST00000507078.1:ENST00000511833.3:ENST00000338977.5:ENST00000505900.1	protein_coding	protein_coding	protein_coding:transcribed_processed_pseudogene	protein_coding:nonsense_mediated_decay:processed_transcript	8	67	2	1.41932	1.92464	2.42996	0.0391653	0.0104804	0.161534	0.0855777
chr4	70807639	70807737	1970493	0	+	0.520408	(0.515,0.57]	chr4	197566	11	UTR3	UTR3:EXON_MRNA	RUFY3	ENSG00000018189.13	ENST00000381006.8	protein_coding	protein_coding	protein_coding	protein_coding	11	86	2	1.64884	1.9246349999999999	2.20043	0.0137119	0.00392045	0.0949306	0.0570863
chr7	107052986	107053086	3377248	0	+	0.49	(0.476,0.515]	chr7	316240	74	INTRON	INTRON	PRKAR2B	ENSG00000005249.13	ENST00000265717.5	protein_coding	protein_coding	protein_coding	protein_coding	4	36	2	1.61586	1.9246050000000001	2.23335	0.0634557	0.0567093	0.185107	0.177047
chr7	138504708	138504808	3435086	0	+	0.51	(0.476,0.515]	chr7	319964	3	SS5_PROX	SS5_PROX:INTRON	TRIM24	ENSG00000122779.18	ENST00000343526.9:ENST00000415680.6:ENST00000497516.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	36	2	1.61586	1.9246050000000001	2.23335	0.0634557	0.0567093	0.185107	0.177047
chr7	66591359	66591458	3540108	0	-	0.464646	(0.44,0.476]	chr7	330280	24	INTRON	INTRON	RABGEF1P1	ENSG00000229180.8	ENST00000639011.1:ENST00000692299.1:ENST00000686269.1:ENST00000649635.1:ENST00000686397.1:ENST00000690339.1:ENST00000638711.1:ENST00000692179.1:ENST00000639153.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	7	67	2	1.70242	1.92454	2.14666	0.0282713	0.0116436	0.137721	0.0889659
chr5	54036107	54036207	2618165	0	-	0.4	(0.378,0.408]	chr5	248835	1241	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	24	225	2	1.55702	1.924475	2.29193	0.00621532	5.65048e-4	0.0717416	0.0219487
chr2	169573190	169573288	1261698	0	-	0.489796	(0.476,0.515]	chr2	133689	3	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	FASTKD1	ENSG00000138399.18	ENST00000453153.7:ENST00000453929.6:ENST00000445210.1:ENST00000438035.5	protein_coding	protein_coding	protein_coding	protein_coding	11	103	2	1.76217	1.9244500000000002	2.08673	0.0111778	0.00486567	0.0937192	0.0607461
chr19	18834782	18834882	7033348	0	+	0.42	(0.408,0.44]	chr19	700970	11	INTRON	INTRON	UPF1	ENSG00000005007.13	ENST00000262803.10:ENST00000599848.5:ENST00000601981.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	88	2	1.58622	1.92437	2.26252	0.0291748	0.00399285	0.141552	0.0550622
chr4	150987422	150987522	2271493	0	-	0.59	(0.57,1]	chr4	220921	580	INTRON	INTRON	LRBA	ENSG00000198589.14	ENST00000357115.9:ENST00000651943.2:ENST00000510413.5:ENST00000651035.1:ENST00000507224.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	29	2	1.71424	1.9243450000000002	2.13445	0.0279017	0.0241482	0.137011	0.12011
chr3	15857676	15857776	1624424	0	-	0.34	(0.32,0.35]	chr3	168034	430	INTRON	INTRON	ANKRD28	ENSG00000206560.12	ENST00000399451.6:ENST00000412318.5:ENST00000439830.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	72	2	1.54135	1.92433	2.30731	0.0353776	0.0176772	0.150752	0.10525
chr14	58425476	58425574	5904923	0	-	0.44898	(0.44,0.476]	chr14	560883	10	INTRON	INTRON	TIMM9	ENSG00000100575.14	ENST00000395159.7:ENST00000216463.8:ENST00000555593.5:ENST00000556007.6:ENST00000557397.5:ENST00000556367.6:ENST00000555930.6:ENST00000555404.5:ENST00000555097.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	40	2	1.77101	1.924305	2.0776	0.0693975	0.0292951	0.184298	0.141862
chr6	7143704	7143804	2798724	0	+	0.45	(0.44,0.476]	chr6	263733	25	INTRON	INTRON	RREB1	ENSG00000124782.21	ENST00000379933.7:ENST00000491191.5:ENST00000471433.5:ENST00000379938.7:ENST00000467782.5:ENST00000349384.10:ENST00000334984.10:ENST00000475946.5:ENST00000483150.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	40	2	1.77101	1.924305	2.0776	0.0693975	0.0292951	0.184298	0.141862
chr8	105532068	105532168	3839383	0	+	0.45	(0.44,0.476]	chr8	354067	27	INTRON	INTRON	ZFPM2	ENSG00000169946.14	ENST00000407775.7:ENST00000520492.5:ENST00000520027.5:ENST00000524235.5:ENST00000511341.6:ENST00000517361.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	40	2	1.77101	1.924305	2.0776	0.0693975	0.0292951	0.184298	0.141862
chr16	23862032	23862132	6324019	0	+	0.4	(0.378,0.408]	chr16	605693	243	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000498058.1:ENST00000645517.1:ENST00000498739.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	85	2	1.85968	1.92428	1.98888	0.0205239	0.0075228099999999996	0.110999	0.0773151
chr17	41778886	41778985	6769259	0	-	0.474747	(0.44,0.476]	chr17	666305	56	INTRON	INTRON	JUP	ENSG00000173801.17	ENST00000310706.9:ENST00000393930.5:ENST00000393931.8:ENST00000449889.5:ENST00000437187.5:ENST00000424457.5:ENST00000591690.5:ENST00000437369.5:ENST00000589036.1:ENST00000465293.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	63	2	1.45853	1.92428	2.39003	0.0470887	0.0106488	0.152251	0.0915714
chr4	68323115	68323215	2154607	0	-	0.34	(0.32,0.35]	chr4	212238	2	SS3_PROX	SS3_PROX:INTRON	YTHDC1	ENSG00000083896.13	ENST00000344157.9:ENST00000355665.7:ENST00000579690.5:ENST00000506175.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	42	2	1.61669	1.924255	2.23182	0.068598	0.0578816	0.188651	0.184298
chr13	110890443	110890542	5650389	0	-	0.363636	(0.35,0.378]	chr13	538339	63	INTRON	INTRON	ANKRD10	ENSG00000088448.14	ENST00000267339.6:ENST00000485844.1:ENST00000603993.1:ENST00000489973.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	73	2	1.60653	1.924245	2.24196	0.0427748	0.00744693	0.148082	0.0772645
chr22	20081477	20081575	7478241	0	+	0.581633	(0.57,1]	chr22	762700	4	INTRON	INTRON	DGCR8	ENSG00000128191.16	ENST00000383024.6:ENST00000351989.8:ENST00000457069.1	protein_coding	protein_coding	protein_coding	protein_coding	14	66	2	1.56357	1.924145	2.28472	0.0138499	7.1544e-4	0.0953077	0.0244077
chr1	44819939	44819997	436413	0	-	0.37931	(0.378,0.408]	chr1	52886	2	EXON_SMALL	EXON_SMALL	RNU5E-6P	ENSG00000202444.1	ENST00000365574.1	snRNA	snRNA	snRNA	snRNA	226	2108	2	1.81195	1.92405	2.03615	5.65285e-4	3.75825e-5	0.0219554	0.00490963
chr18	743815	743915	6940013	0	-	0.51	(0.476,0.515]	chr18	686482	4	SS3_PROX	SS3_PROX:INTRON	YES1	ENSG00000176105.14	ENST00000584307.5:ENST00000314574.5:ENST00000577961.5	protein_coding	protein_coding	protein_coding	protein_coding	4	40	2	1.91817	1.924005	1.92984	0.0466474	0.0459211	0.164984	0.151522
chr16	89387191	89387291	6542557	0	-	0.47	(0.44,0.476]	chr16	634240	137	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000647238.1:ENST00000644045.1:ENST00000643147.1:ENST00000644139.1:ENST00000568512.6:ENST00000566973.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	13	121	2	1.57044	1.9239950000000001	2.27755	0.0206907	0.00100696	0.110999	0.0292522
chr11	65433157	65433257	4805874	0	+	0.38	(0.378,0.408]	chr11	446554	105	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	51	464	2	1.87947	1.92389	1.96831	9.89977e-4	3.34892e-4	0.0288069	0.0162819
chr9	94173667	94173767	4161143	0	+	0.52	(0.515,0.57]	chr9	379417	69	INTRON	INTRON	MIRLET7A1HG	ENSG00000269929.4	ENST00000652769.1:ENST00000652620.1:ENST00000602703.1:ENST00000660581.1	lncRNA	lncRNA	lncRNA	lncRNA	21	164	2	1.91026	1.923825	1.93739	0.00215404	0.00122921	0.0417866	0.0325908
chr20	49284986	49285085	7284671	0	+	0.30303	(0.28,0.32]	chr20	741065	28	INTRON	INTRON	ZFAS1	ENSG00000177410.13	ENST00000371743.8:ENST00000417721.5:ENST00000441722.5:ENST00000450535.5:ENST00000458653.5:ENST00000428008.6:ENST00000620594.2:ENST00000652916.1:ENST00000326677.9:ENST00000659056.1	lncRNA	lncRNA	lncRNA	lncRNA	19	234	2	1.91963	1.9238	1.92797	0.00401207	0.00364329	0.0577967	0.0535094
chr5	149494966	149495065	2750497	0	-	0.292929	(0.28,0.32]	chr5	258992	21	UTR3	UTR3:EXON_MRNA	CSNK1A1:ENSG00000230551	ENSG00000113712.19:ENSG00000230551.4	ENST00000261798.10:ENST00000377843.8:ENST00000657001.1:ENST00000499521.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron	4	52	2	1.83771	1.9238	2.00989	0.0591725	0.0427801	0.189982	0.148082
chr6	30706883	30706983	3077855	0	-	0.49	(0.476,0.515]	chr6	286466	1	SS5_PROX	SS5_PROX:INTRON	MDC1	ENSG00000137337.16	ENST00000376406.8:ENST00000417033.1:ENST00000492462.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	92	2	1.69758	1.9237350000000002	2.14989	0.0144542	0.00611105	0.105087	0.0676501
chr22	21586264	21586364	7481890	0	+	0.54	(0.515,0.57]	chr22	763232	175	INTRON	INTRON	UBE2L3	ENSG00000185651.16	ENST00000458578.6:ENST00000545681.2:ENST00000696046.1:ENST00000342192.9:ENST00000496722.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	65	2	1.68687	1.9236900000000001	2.16051	0.0300837	0.0046825	0.129186	0.0631419
chr1	8869054	8869154	374199	0	-	0.37	(0.35,0.378]	chr1	43624	6	INTRON	INTRON	ENO1	ENSG00000074800.16	ENST00000234590.10:ENST00000647408.1:ENST00000464920.2:ENST00000646370.2:ENST00000645609.1:ENST00000645600.1:ENST00000497492.1:ENST00000646660.1:ENST00000646680.1:ENST00000646906.1:ENST00000646156.1:ENST00000643438.1:ENST00000489867.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	93	2	1.50939	1.9236550000000001	2.33792	0.0423993	0.0024225	0.148082	0.0454587
chr10	67896126	67896225	4440517	0	+	0.454545	(0.44,0.476]	chr10	409441	42	INTRON	INTRON	SIRT1	ENSG00000096717.12	ENST00000212015.11:ENST00000432464.5:ENST00000473922.1:ENST00000406900.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	74	2	1.42079	1.92361	2.42643	0.0526065	0.0033369	0.160978	0.0528877
chr15	41349927	41350020	6004945	0	+	0.44086	(0.44,0.476]	chr15	571309	3	INTRON	INTRON	NUSAP1	ENSG00000137804.14	ENST00000668273.1:ENST00000260359.10:ENST00000558123.5:ENST00000559046.5:ENST00000414849.6:ENST00000450592.6:ENST00000559596.6:ENST00000558582.5:ENST00000560747.5:ENST00000560177.5:ENST00000557840.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	58	2	1.7651	1.923605	2.08211	0.039388	0.0130715	0.143072	0.0996047
chr7	151505148	151505248	3674778	0	-	0.3	(0.28,0.32]	chr7	341207	66	INTRON	INTRON	RHEB	ENSG00000106615.10	ENST00000262187.10:ENST00000472642.5:ENST00000478470.5:ENST00000496004.5:ENST00000470370.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	105	2	1.87915	1.923585	1.96802	0.0251578	0.00813561	0.12011	0.0810802
chr1	1890263	1890363	362833	0	-	0.7	(0.57,1]	chr1	42313	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	GNB1	ENSG00000078369.18	ENST00000610897.4:ENST00000615252.4:ENST00000378609.9:ENST00000439272.6:ENST00000434686.6:ENST00000472614.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	26	2	1.91937	1.923465	1.92756	0.0468438	0.0220439	0.167716	0.115395
chr12	54294351	54294445	5330926	0	-	0.617021	(0.57,1]	chr12	508648	6	INTRON	INTRON	NFE2	ENSG00000123405.14	ENST00000435572.7:ENST00000312156.8:ENST00000540264.2:ENST00000553070.5:ENST00000553198.1	protein_coding	protein_coding	protein_coding	protein_coding	5	26	2	1.91937	1.923465	1.92756	0.0468438	0.0220439	0.167716	0.115395
chr16	29608716	29608815	6471688	0	-	0.626263	(0.57,1]	chr16	625301	139	INTRON	INTRON	ENSG00000288632	ENSG00000288632.1	ENST00000675579.1	lncRNA	lncRNA	lncRNA	lncRNA	5	26	2	1.91937	1.923465	1.92756	0.0468438	0.0220439	0.167716	0.115395
chr2	65095572	65095672	1142616	0	-	0.53	(0.515,0.57]	chr2	122174	41	INTRON	INTRON	RAB1A	ENSG00000138069.18	ENST00000649427.1:ENST00000494188.1:ENST00000409784.8:ENST00000409892.5:ENST00000409751.1:ENST00000398529.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	36	2	1.5060500000000001	1.92346	2.34087	0.0511812	0.0469761	0.176696	0.151917
chrX	71553420	71553520	7680152	0	+	0.31	(0.28,0.32]	chrX	786405	50	INTRON	INTRON	OGT	ENSG00000147162.14	ENST00000373719.8:ENST00000488174.5:ENST00000373701.7:ENST00000455587.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	10	123	2	1.48049	1.9234	2.36631	0.0503127	0.00142417	0.156383	0.0347039
chr7	101848855	101848955	3366677	0	+	0.33	(0.32,0.35]	chr7	315215	295	INTRON	INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000497815.5:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000607092.1:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000558469.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	65	2	1.49965	1.923375	2.3471	0.0542985	0.0156413	0.182243	0.101393
chr1	35184170	35184265	420506	0	-	0.305263	(0.28,0.32]	chr1	50651	14	UTR3	UTR3:EXON_MRNA:INTRON	SFPQ	ENSG00000116560.12	ENST00000470472.5:ENST00000460428.5:ENST00000696553.1:ENST00000357214.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	69	802	2	1.82494	1.92325	2.02156	7.79368e-4	7.07428e-4	0.0257168	0.0242016
chr20	47282317	47282417	7348759	0	-	0.47	(0.44,0.476]	chr20	749299	1	SS3_PROX	SS3_PROX:INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000467200.6:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000468376.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	24	221	2	1.79689	1.9232399999999998	2.04959	0.00223849	0.00117202	0.0435144	0.0312564
chr3	37342751	37342849	1396773	0	+	0.306122	(0.28,0.32]	chr3	146446	11	INTRON	INTRON	GOLGA4	ENSG00000144674.17	ENST00000444882.5:ENST00000356847.8:ENST00000361924.7:ENST00000437131.1	protein_coding	protein_coding	protein_coding	protein_coding	5	53	2	1.51776	1.923235	2.32871	0.0581621	0.0528371	0.178899	0.167723
chr8	102386499	102386599	4012494	0	-	0.32	(0.28,0.32]	chr8	367237	245	INTRON	INTRON	UBR5	ENSG00000104517.13	ENST00000520539.6:ENST00000220959.8:ENST00000521922.5	protein_coding	protein_coding	protein_coding	protein_coding	10	122	2	1.56174	1.92322	2.2847	0.039921	0.00208314	0.143115	0.0424653
chr1	40056247	40056346	79776	0	+	0.474747	(0.44,0.476]	chr1	10330	144	INTRON	INTRON	CAP1	ENSG00000131236.18	ENST00000372797.7:ENST00000372802.5:ENST00000449311.5:ENST00000421589.5:ENST00000414893.5:ENST00000372792.7:ENST00000372805.8:ENST00000414281.5:ENST00000420216.5:ENST00000372798.5:ENST00000340450.7:ENST00000435719.5:ENST00000427843.5:ENST00000424977.1:ENST00000417287.5:ENST00000446031.1	protein_coding	protein_coding	protein_coding	protein_coding	8	74	2	1.38203	1.9231250000000002	2.46422	0.058781	0.00282908	0.167915	0.0491595
chr6	149735970	149736070	3246862	0	-	0.47	(0.44,0.476]	chr6	301678	1	SS5_PROX	SS5_PROX:INTRON	NUP43	ENSG00000120253.14	ENST00000340413.7:ENST00000367404.8:ENST00000403890.7:ENST00000367402.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	74	2	1.38203	1.9231250000000002	2.46422	0.058781	0.00282908	0.167915	0.0491595
chr15	27229453	27229553	5984738	0	+	0.48	(0.476,0.515]	chr15	569164	2023	INTRON	INTRON	GABRG3	ENSG00000182256.13	ENST00000615808.5:ENST00000555083.5	protein_coding	protein_coding	protein_coding	protein_coding	5	48	2	1.52615	1.92308	2.32001	0.0739267	0.0136217	0.190914	0.101682
chr1	32172485	32172584	64115	0	+	0.383838	(0.378,0.408]	chr1	8150	17	UTR3	UTR3:EXON_MRNA	KPNA6	ENSG00000025800.14	ENST00000373625.8:ENST00000471599.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	24	217	2	1.61971	1.923065	2.22642	0.00415677	0.00102157	0.0590787	0.029231300000000002
chr2	42331279	42331377	760141	0	+	0.397959	(0.378,0.408]	chr2	86258	12	UTR3	UTR3:EXON_MRNA	EML4	ENSG00000143924.19	ENST00000318522.10:ENST00000406175.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	40	2	1.58349	1.9230049999999999	2.26252	0.0653091	0.056222	0.18407	0.180158
chr6	110891180	110891278	2939112	0	+	0.418367	(0.408,0.44]	chr6	276780	5	EXON_MRNA	EXON_MRNA:INTRON	AMD1	ENSG00000123505.19	ENST00000451850.6:ENST00000675380.1:ENST00000368882.8:ENST00000672937.2:ENST00000368885.8:ENST00000368877.9:ENST00000368876.2:ENST00000612642.4:ENST00000619590.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	82	2	1.83931	1.9228	2.00629	0.0189661	0.00806984	0.108861	0.0806514
chr1	204534618	204534718	297604	0	+	0.44	(0.408,0.44]	chr1	34289	14	INTRON	INTRON	MDM4	ENSG00000198625.14	ENST00000367183.7:ENST00000391947.6:ENST00000454264.6:ENST00000612738.4:ENST00000614459.4:ENST00000616250.4:ENST00000367182.8:ENST00000463049.5:ENST00000470908.5:ENST00000471783.1:ENST00000367180.5:ENST00000507825.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	20	171	2	1.60275	1.9227699999999999	2.24279	0.00534247	0.00167853	0.0663076	0.0370386
chr9	137100348	137100442	4222789	0	+	0.446809	(0.44,0.476]	chr9	387926	6	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	MAN1B1	ENSG00000177239.16	ENST00000682881.1:ENST00000683324.1:ENST00000684138.1:ENST00000683135.1:ENST00000542372.2:ENST00000371587.9:ENST00000684366.1:ENST00000684229.1:ENST00000683355.1:ENST00000682117.1:ENST00000683475.1:ENST00000682425.1:ENST00000682210.1:ENST00000684645.1:ENST00000683979.1:ENST00000371589.9:ENST00000535144.6:ENST00000684272.1:ENST00000475449.7:ENST00000684759.1:ENST00000545539.6:ENST00000684144.1:ENST00000683987.1:ENST00000682212.1:ENST00000544448.6:ENST00000684297.1:ENST00000474902.5:ENST00000682964.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	58	2	1.81283	1.922745	2.03266	0.0343005	0.0155853	0.135641	0.109411
chr14	21256277	21256375	5835035	0	-	0.479592	(0.476,0.515]	chr14	554465	13	INTRON	INTRON	HNRNPC	ENSG00000092199.19	ENST00000336053.10:ENST00000553300.6:ENST00000554969.5:ENST00000556142.5:ENST00000554455.5:ENST00000430246.6:ENST00000553753.5:ENST00000555309.5:ENST00000555914.5:ENST00000557442.5:ENST00000556628.5:ENST00000556513.5:ENST00000555883.5:ENST00000557201.5:ENST00000556897.5:ENST00000420743.6:ENST00000554539.5:ENST00000554383.5:ENST00000555215.5:ENST00000555137.5:ENST00000554891.5:ENST00000556226.5:ENST00000555176.5:ENST00000553614.5:ENST00000557336.1:ENST00000557768.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	15	134	2	1.60181	1.922665	2.24352	0.0108406	0.0019689	0.0873034	0.0411469
chr18	2762636	2762736	6865980	0	+	0.45	(0.44,0.476]	chr18	680145	5	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	SMCHD1	ENSG00000101596.17	ENST00000320876.11:ENST00000688342.1:ENST00000693213.1:ENST00000577880.5:ENST00000584897.5:ENST00000686763.1:ENST00000686864.1:ENST00000688708.1:ENST00000645355.1:ENST00000688964.1:ENST00000685656.1:ENST00000689034.1:ENST00000693522.1:ENST00000583344.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	112	2	1.73299	1.922645	2.1123	0.014376	0.0023263	0.0968323	0.0442989
chr4	150973832	150973932	2271357	0	-	0.35	(0.32,0.35]	chr4	220921	444	INTRON	INTRON	LRBA	ENSG00000198589.14	ENST00000357115.9:ENST00000651943.2:ENST00000510413.5:ENST00000651035.1:ENST00000507224.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	72	2	1.42176	1.92264	2.42352	0.0511006	0.0122807	0.176696	0.091087
chr11	28114401	28114500	4752214	0	+	0.373737	(0.35,0.378]	chr11	440072	4	INTRON	INTRON	METTL15	ENSG00000169519.21	ENST00000406787.7:ENST00000403099.5:ENST00000451385.6:ENST00000407364.8:ENST00000532947.2:ENST00000634627.1:ENST00000634973.1:ENST00000303459.10:ENST00000634721.1:ENST00000634762.1:ENST00000437814.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	13	130	2	1.91865	1.92255	1.92645	0.0104433	0.00336025	0.0855102	0.0532154
chr5	119082396	119082496	2459876	0	+	0.48	(0.476,0.515]	chr5	235580	3	INTRON	INTRON	DMXL1	ENSG00000172869.15	ENST00000509902.5:ENST00000539542.6:ENST00000503802.5:ENST00000311085.8:ENST00000510924.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	48	2	1.91525	1.922545	1.92984	0.0466474	0.0232571	0.151522	0.127416
chr16	48311880	48311980	6346432	0	+	0.45	(0.44,0.476]	chr16	609123	82	INTRON	INTRON	LONP2	ENSG00000102910.14	ENST00000285737.9:ENST00000535754.5:ENST00000416006.7:ENST00000566755.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	40	2	1.83899	1.92254	2.00609	0.0589734	0.0360127	0.167915	0.152355
chr5	54072625	54072724	2618532	0	-	0.434343	(0.408,0.44]	chr5	248837	245	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	82	2	1.42102	1.92253	2.42404	0.0389354	0.00413548	0.160836	0.0566868
chr1	108945276	108945374	518986	0	-	0.336735	(0.32,0.35]	chr1	60902	6	INTRON	INTRON	CLCC1	ENSG00000121940.17	ENST00000690509.1:ENST00000687328.1:ENST00000685014.1:ENST00000685540.1:ENST00000686576.1:ENST00000688070.1:ENST00000691513.1:ENST00000686821.1:ENST00000692511.1:ENST00000689479.1:ENST00000687646.1:ENST00000687998.1:ENST00000687226.1:ENST00000693336.1:ENST00000689991.1:ENST00000687591.1:ENST00000691777.1:ENST00000690756.1:ENST00000688778.1:ENST00000685104.1:ENST00000689103.1:ENST00000687734.1:ENST00000686434.1:ENST00000685497.1:ENST00000691342.1:ENST00000686776.1:ENST00000692342.1:ENST00000689351.1:ENST00000692584.1:ENST00000692775.1:ENST00000687134.1:ENST00000690707.1:ENST00000675018.1:ENST00000690781.1:ENST00000691556.1:ENST00000689189.1:ENST00000687099.1:ENST00000685791.1:ENST00000687865.1:ENST00000687449.1:ENST00000688285.1:ENST00000686817.1:ENST00000369968.7:ENST00000674992.1:ENST00000675001.1:ENST00000369969.7:ENST00000356970.6:ENST00000369976.6:ENST00000688610.1:ENST00000675128.1:ENST00000693089.1:ENST00000675571.1:ENST00000675650.1:ENST00000369970.8:ENST00000674561.2:ENST00000675451.1:ENST00000675654.1:ENST00000675790.1:ENST00000675584.1:ENST00000692795.1:ENST00000691731.1:ENST00000689359.1:ENST00000676392.2:ENST00000676391.2:ENST00000676454.1:ENST00000674849.1:ENST00000675956.1:ENST00000302500.5:ENST00000675508.1:ENST00000688168.1:ENST00000693673.1:ENST00000692404.1:ENST00000686078.1:ENST00000690874.1:ENST00000692732.1:ENST00000685628.1:ENST00000676306.1:ENST00000348264.6:ENST00000675247.2:ENST00000676059.2:ENST00000674527.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	109	2	1.45623	1.9225249999999998	2.38882	0.0247853	0.00566663	0.131909	0.0653997
chr6	15253561	15253661	2823021	0	+	0.46	(0.44,0.476]	chr6	265190	42	INTRON	INTRON	JARID2	ENSG00000008083.14	ENST00000341776.7:ENST00000397311.4	protein_coding	protein_coding	protein_coding	protein_coding	11	103	2	1.50943	1.922465	2.3355	0.0316416	0.00123661	0.13151	0.0326427
chr5	109694347	109694446	2449055	0	+	0.484848	(0.476,0.515]	chr5	234584	34	INTRON	INTRON	MAN2A1	ENSG00000112893.10	ENST00000261483.5	protein_coding	protein_coding	protein_coding	protein_coding	7	61	2	1.52755	1.922405	2.31726	0.0355377	0.015077	0.151404	0.0994339
chr15	58712577	58712677	6193143	0	-	0.48	(0.476,0.515]	chr15	589982	48	INTRON	INTRON	ADAM10	ENSG00000137845.15	ENST00000260408.8:ENST00000402627.5:ENST00000561288.1:ENST00000559053.1:ENST00000558733.5:ENST00000439637.5:ENST00000497846.5:ENST00000558004.1:ENST00000560608.5:ENST00000561149.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	48	2	1.68092	1.922345	2.16377	0.0474026	0.0243026	0.169265	0.12011
chr2	176320699	176320799	925731	0	+	0.47	(0.44,0.476]	chr2	101688	160	INTRON	INTRON	MTX2	ENSG00000128654.14	ENST00000420864.5:ENST00000249442.11:ENST00000423461.6:ENST00000443241.5:ENST00000452865.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	67	2	1.38039	1.9223050000000002	2.46422	0.0762718	0.00282908	0.195539	0.0491595
chr17	82534882	82534981	6692756	0	+	0.545455	(0.515,0.57]	chr17	654627	142	INTRON	INTRON	FOXK2	ENSG00000141568.21	ENST00000473637.6:ENST00000335255.10:ENST00000527313.6:ENST00000570585.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	42	2	1.811	1.922305	2.03361	0.0325989	0.0325854	0.145164	0.133687
chr2	161332646	161332746	901354	0	+	0.37	(0.35,0.378]	chr2	99704	134	INTRON	INTRON	PSMD14	ENSG00000115233.12	ENST00000409682.8:ENST00000437630.1	protein_coding	protein_coding	protein_coding	protein_coding	7	73	2	1.44934	1.922265	2.39519	0.0658369	0.00401951	0.181518	0.0578189
chr22	21604656	21604756	7482074	0	+	0.38	(0.378,0.408]	chr22	763238	113	INTRON	INTRON	UBE2L3	ENSG00000185651.16	ENST00000458578.6:ENST00000545681.2:ENST00000696046.1:ENST00000342192.9:ENST00000496722.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	84	2	1.57136	1.922225	2.27309	0.0233757	0.00769587	0.128037	0.0754631
chr11	46786434	46786531	4948144	0	-	0.43299	(0.408,0.44]	chr11	463765	14	INTRON	INTRON	CKAP5	ENSG00000175216.15	ENST00000529230.6:ENST00000312055.9:ENST00000354558.7	protein_coding	protein_coding	protein_coding	protein_coding	7	67	2	1.79818	1.922145	2.04611	0.020428	0.016628	0.122109	0.102621
chr3	141888150	141888250	1526190	0	+	0.36	(0.35,0.378]	chr3	159005	102	INTRON	INTRON	ATP1B3	ENSG00000069849.11	ENST00000475483.5:ENST00000465172.5:ENST00000286371.8:ENST00000466678.5:ENST00000462082.1:ENST00000495216.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	83	2	1.75081	1.922145	2.09348	0.0427459	0.00418185	0.148082	0.0591344
chr17	50728562	50728662	6627058	0	+	0.53	(0.515,0.57]	chr17	647183	42	INTRON	INTRON	LUC7L3	ENSG00000108848.16	ENST00000625349.2:ENST00000508045.5:ENST00000508218.5:ENST00000509335.5:ENST00000506686.5:ENST00000393227.6:ENST00000504563.6:ENST00000505658.6:ENST00000240304.5:ENST00000508482.5:ENST00000505619.5:ENST00000510984.5:ENST00000507200.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	57	2	1.68552	1.9220899999999999	2.15866	0.0292028	0.0100547	0.141637	0.0848452
chr16	58618386	58618486	6496268	0	-	0.49	(0.476,0.515]	chr16	628638	185	INTRON	INTRON	CNOT1	ENSG00000125107.19	ENST00000317147.10:ENST00000569240.5:ENST00000567188.5:ENST00000441024.6:ENST00000565605.5:ENST00000564557.1:ENST00000569916.1:ENST00000565697.1:ENST00000569020.5:ENST00000568158.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	66	2	1.82798	1.9220799999999998	2.01618	0.0184548	0.0180082	0.116598	0.106756
chr1	111642755	111642855	185345	0	+	0.52	(0.515,0.57]	chr1	20514	148	INTRON	INTRON	RAP1A	ENSG00000116473.15	ENST00000356415.5:ENST00000687939.1:ENST00000369709.4:ENST00000494982.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	64	2	1.44237	1.922075	2.40178	0.0456196	0.00382306	0.164236	0.0542786
chr2	130132866	130132964	863601	0	+	0.285714	(0.28,0.32]	chr2	96903	27	INTRON	INTRON	MED15P9	ENSG00000223760.4	ENST00000427638.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	5	62	2	1.60343	1.92202	2.24061	0.0669889	0.0194267	0.183051	0.119831
chr14	21256375	21256474	5835036	0	-	0.535354	(0.515,0.57]	chr14	554465	14	INTRON	INTRON	HNRNPC	ENSG00000092199.19	ENST00000336053.10:ENST00000553300.6:ENST00000554969.5:ENST00000556142.5:ENST00000554455.5:ENST00000430246.6:ENST00000553753.5:ENST00000555309.5:ENST00000555914.5:ENST00000557442.5:ENST00000556628.5:ENST00000556513.5:ENST00000555883.5:ENST00000557201.5:ENST00000556897.5:ENST00000420743.6:ENST00000554539.5:ENST00000554383.5:ENST00000555215.5:ENST00000555137.5:ENST00000554891.5:ENST00000556226.5:ENST00000555176.5:ENST00000553614.5:ENST00000557336.1:ENST00000557768.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	23	179	2	1.70416	1.92201	2.13986	0.00434857	3.69213e-4	0.0581091	0.0172871
chr15	101745134	101745234	6271250	0	-	0.34	(0.32,0.35]	chr15	598243	1	SS5_PROX	SS5_PROX:INTRON	ENSG00000259658	ENSG00000259658.5	ENST00000636288.2:ENST00000635726.1:ENST00000558592.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	8	91	2	1.84365	1.922005	2.00036	0.0184323	0.012813	0.116493	0.0926667
chr4	39707473	39707573	1953085	0	+	0.5	(0.476,0.515]	chr4	195630	87	INTRON	INTRON	UBE2K	ENSG00000078140.14	ENST00000510934.5:ENST00000261427.10:ENST00000438068.6:ENST00000513231.5:ENST00000503368.5:ENST00000445950.2:ENST00000510719.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	11	102	2	1.90361	1.92191	1.94021	0.0102027	0.00523626	0.0850389	0.0656295
chr2	87805017	87805115	1172988	0	-	0.469388	(0.44,0.476]	chr2	125238	40	INTRON	INTRON	RGPD2	ENSG00000185304.16	ENST00000398146.5	protein_coding	protein_coding	protein_coding	protein_coding	6	55	2	1.65297	1.921875	2.19078	0.0331814	0.0226089	0.145918	0.117489
chr7	101824375	101824474	3366432	0	+	0.474747	(0.44,0.476]	chr7	315215	50	INTRON	INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000497815.5:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000607092.1:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000558469.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	55	2	1.65297	1.921875	2.19078	0.0331814	0.0226089	0.145918	0.117489
chr7	6034825	6034925	3475991	0	-	0.51	(0.476,0.515]	chr7	325180	54	INTRON	INTRON	EIF2AK1	ENSG00000086232.13	ENST00000199389.11	protein_coding	protein_coding	protein_coding	protein_coding	7	65	2	1.86492	1.92184	1.97876	0.0550347	0.00655939	0.165463	0.0735539
chrX	41348022	41348121	7645816	0	+	0.30303	(0.28,0.32]	chrX	782558	2	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	DDX3X	ENSG00000215301.11	ENST00000625837.2:ENST00000626301.2:ENST00000629785.2:ENST00000630255.2:ENST00000630370.2:ENST00000630858.2:ENST00000629496.3:ENST00000478993.5:ENST00000457138.7:ENST00000644876.2:ENST00000399959.7:ENST00000644074.1:ENST00000645338.1:ENST00000646196.1:ENST00000642793.1:ENST00000646940.1:ENST00000644307.1:ENST00000645561.1:ENST00000645080.1:ENST00000642597.1:ENST00000642722.1:ENST00000644109.1:ENST00000644958.1:ENST00000646122.1:ENST00000644513.1:ENST00000645589.1:ENST00000441189.4:ENST00000646822.1:ENST00000646223.1:ENST00000643963.1:ENST00000646319.1:ENST00000644073.1:ENST00000644677.1:ENST00000642322.1:ENST00000645120.1:ENST00000646107.1:ENST00000646627.1:ENST00000642589.1:ENST00000645380.1:ENST00000646390.1:ENST00000642424.1:ENST00000642161.1:ENST00000645574.1:ENST00000646679.1:ENST00000647286.1:ENST00000642687.1:ENST00000642801.1:ENST00000616050.3:ENST00000647477.1:ENST00000611968.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	15	176	2	1.80578	1.92168	2.03758	0.00603083	0.00542581	0.0676302	0.0666592
chr6	34334264	34334364	3084189	0	-	0.41	(0.408,0.44]	chr6	288627	382	INTRON	INTRON	NUDT3:RPS10-NUDT3	ENSG00000272325.2:ENSG00000270800.3	ENST00000607016.2:ENST00000639725.1:ENST00000639877.1:ENST00000605528.2	protein_coding	protein_coding	protein_coding	protein_coding	9	82	2	1.45405	1.921665	2.38928	0.0381812	0.0039105	0.141795	0.0569957
chr18	36162689	36162788	6891775	0	+	0.40404	(0.378,0.408]	chr18	683062	13	INTRON	INTRON	ELP2	ENSG00000134759.14	ENST00000351393.10:ENST00000442325.6:ENST00000358232.11:ENST00000423854.6:ENST00000539560.5:ENST00000350494.10:ENST00000542824.5:ENST00000540799.1:ENST00000542050.5:ENST00000543861.5:ENST00000540766.5:ENST00000541294.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	64	2	1.63086	1.9216199999999999	2.21238	0.0252353	0.0218124	0.133676	0.11491
chr1	42833368	42833465	84467	0	+	0.319588	(0.28,0.32]	chr1	11106	19	INTRON	INTRON	ERMAP	ENSG00000164010.15	ENST00000372517.8:ENST00000647120.1:ENST00000487556.6:ENST00000642150.1:ENST00000372514.7:ENST00000328249.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	71	2	1.83325	1.92157	2.00989	0.0427801	0.0199548	0.148082	0.120668
chr17	61890923	61891012	6809221	0	-	0.404494	(0.378,0.408]	chr17	672707	7	INTRON	INTRON	INTS2	ENSG00000108506.13	ENST00000251334.7:ENST00000617492.4:ENST00000444766.7:ENST00000646745.1:ENST00000647009.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	42	2	1.89621	1.92151	1.94681	0.0488044	0.0457723	0.173377	0.149888
chr3	141884055	141884155	1526149	0	+	0.32	(0.28,0.32]	chr3	159005	61	INTRON	INTRON	ATP1B3	ENSG00000069849.11	ENST00000475483.5:ENST00000465172.5:ENST00000286371.8:ENST00000466678.5:ENST00000462082.1:ENST00000495216.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	95	2	1.87474	1.92138	1.96802	0.0251578	0.0115687	0.12011	0.0962115
chr10	125071312	125071412	4713442	0	-	0.46	(0.44,0.476]	chr10	434897	318	INTRON	INTRON	CTBP2	ENSG00000175029.17	ENST00000337195.9:ENST00000411419.6:ENST00000494626.6:ENST00000531469.5:ENST00000460976.5:ENST00000476817.1:ENST00000530884.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	49	2	1.7651	1.92135	2.0776	0.039388	0.0292951	0.143072	0.141862
chr7	111387770	111387870	3622360	0	-	0.46	(0.44,0.476]	chr7	337093	4239	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	49	2	1.7651	1.92135	2.0776	0.039388	0.0292951	0.143072	0.141862
chr12	22655332	22655432	5095048	0	+	0.5	(0.476,0.515]	chr12	481236	89	INTRON	INTRON	ETNK1	ENSG00000139163.16	ENST00000671733.1:ENST00000266517.9:ENST00000538218.2:ENST00000673496.1:ENST00000673406.1:ENST00000672995.1:ENST00000539974.1:ENST00000673188.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	14	125	2	1.5204	1.921185	2.32197	0.0173796	0.00133705	0.104309	0.0335955
chr3	100717903	100718001	1468020	0	+	0.408163	(0.378,0.408]	chr3	153849	37	INTRON	INTRON	TFG	ENSG00000114354.15	ENST00000675047.1:ENST00000490574.6:ENST00000675543.1:ENST00000676308.1:ENST00000675499.1:ENST00000674699.1:ENST00000418917.7:ENST00000675553.1:ENST00000620299.5:ENST00000675246.1:ENST00000675692.1:ENST00000676276.1:ENST00000676054.1:ENST00000675890.1:ENST00000675011.1:ENST00000675586.1:ENST00000674645.1:ENST00000675958.1:ENST00000674798.1:ENST00000676010.1:ENST00000675591.1:ENST00000479672.6:ENST00000675420.1:ENST00000674615.1:ENST00000676431.1:ENST00000674758.1:ENST00000240851.9:ENST00000675243.1:ENST00000676111.1:ENST00000476228.5:ENST00000463568.6:ENST00000676395.1:ENST00000487505.6:ENST00000615993.2:ENST00000676455.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	117	2	1.70653	1.9211	2.13567	0.0219966	0.00145781	0.115395	0.0349875
chr21	33455726	33455784	7440729	0	-	0.310345	(0.28,0.32]	chr21	759335	1	CDS	CDS:UTR3:EXON_MRNA	TMEM50B	ENSG00000142188.17	ENST00000420455.5:ENST00000542230.7:ENST00000441128.5:ENST00000442441.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	13	144	2	1.87391	1.920965	1.96802	0.0251578	0.00332201	0.12011	0.0528673
chr17	82535880	82535980	6692766	0	+	0.51	(0.476,0.515]	chr17	654627	152	INTRON	INTRON	FOXK2	ENSG00000141568.21	ENST00000473637.6:ENST00000335255.10:ENST00000527313.6:ENST00000570585.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	62	2	1.4095	1.92096	2.43242	0.054012	0.0091895	0.16443	0.0855292
chr6	136258319	136258419	3230780	0	-	0.29	(0.28,0.32]	chr6	300321	18	UTR3	UTR3:EXON_MRNA	BCLAF1	ENSG00000029363.17	ENST00000640069.1:ENST00000531224.6:ENST00000353331.8:ENST00000533422.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	86	2	1.50806	1.920935	2.33381	0.0317995	0.0174951	0.14477	0.104863
chr3	177155584	177155684	1872027	0	-	0.28	[0,0.28]	chr3	187422	195	INTRON	INTRON	TBL1XR1	ENSG00000177565.18	ENST00000457928.7:ENST00000430069.5:ENST00000673974.1:ENST00000352800.10:ENST00000422442.6:ENST00000428970.5:ENST00000424913.5:ENST00000437738.5:ENST00000431421.5:ENST00000635794.1:ENST00000630796.2:ENST00000450267.5:ENST00000630833.2:ENST00000431674.5:ENST00000422066.5:ENST00000443315.5:ENST00000627825.2:ENST00000427349.5:ENST00000413084.5:ENST00000637137.1:ENST00000491623.2:ENST00000637544.1:ENST00000636187.1:ENST00000636912.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	90	2	1.50357	1.9209100000000001	2.33825	0.0436989	0.0195228	0.162255	0.109483
chr15	78897359	78897456	6069805	0	+	0.329897	(0.32,0.35]	chr15	578256	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	MORF4L1	ENSG00000185787.15	ENST00000379535.8:ENST00000331268.9:ENST00000426013.7:ENST00000559345.5:ENST00000561171.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	57	2	1.77704	1.92091	2.06478	0.0719969	0.0147778	0.187322	0.106702
chr4	159262781	159262881	2075106	0	+	0.34	(0.32,0.35]	chr4	205218	186	INTRON	INTRON	RAPGEF2	ENSG00000109756.10	ENST00000644474.1:ENST00000691494.1:ENST00000505478.5:ENST00000504604.5:ENST00000644902.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	57	2	1.77704	1.92091	2.06478	0.0719969	0.0147778	0.187322	0.106702
chr15	22847757	22847856	5976614	0	+	0.323232	(0.32,0.35]	chr15	568409	21	INTRON	INTRON	NIPA2	ENSG00000140157.16	ENST00000560205.5:ENST00000398014.7:ENST00000359727.8:ENST00000674173.1:ENST00000560762.5:ENST00000337451.8:ENST00000559571.1:ENST00000674289.1:ENST00000674477.1:ENST00000398013.7:ENST00000674330.1:ENST00000560039.1:ENST00000539711.2:ENST00000561072.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	47	2	1.88909	1.9209	1.95271	0.0553737	0.0431213	0.165463	0.162255
chr7	152414438	152414538	3681078	0	-	0.5	(0.476,0.515]	chr7	341660	554	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000682301.1:ENST00000452749.2:ENST00000680867.1:ENST00000683800.1:ENST00000684278.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	102	2	1.84672	1.920855	1.99499	0.0126682	0.00408599	0.0926667	0.0581771
chr6	136289781	136289851	3231128	0	-	0.571429	(0.57,1]	chr6	300411	2	UTR5	UTR5:EXON_MRNA	BCLAF1	ENSG00000029363.17	ENST00000640069.1:ENST00000531224.6:ENST00000353331.8:ENST00000527536.5:ENST00000527613.5:ENST00000527759.5:ENST00000534269.5:ENST00000532384.5:ENST00000530429.5:ENST00000628517.2:ENST00000529826.5:ENST00000528229.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	51	2	1.60054	1.92085	2.24116	0.0155045	0.00307807	0.109094	0.0496321
chr19	34401125	34401224	7052868	0	+	0.464646	(0.44,0.476]	chr19	703434	12	UTR3	UTR3:EXON_MRNA	GPI	ENSG00000105220.17	ENST00000415930.8:ENST00000356487.11	protein_coding	protein_coding	protein_coding	protein_coding	17	165	2	1.91535	1.9207800000000002	1.92621	0.00813281	0.00198673	0.0810802	0.0404678
chr13	98559095	98559195	5643613	0	-	0.45	(0.44,0.476]	chr13	537505	372	INTRON	INTRON	STK24	ENSG00000102572.15	ENST00000539966.6:ENST00000397517.6:ENST00000491878.5:ENST00000481288.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	48	2	1.81595	1.920765	2.02558	0.0363567	0.0317953	0.14477	0.138959
chr1	155763964	155764064	563491	0	-	0.35	(0.32,0.35]	chr1	67268	4	SS3_PROX	SS3_PROX:INTRON	GON4L	ENSG00000116580.20	ENST00000368331.6:ENST00000615926.4:ENST00000437809.5:ENST00000271883.9	protein_coding	protein_coding	protein_coding	protein_coding	7	78	2	1.84365	1.92075	1.99785	0.0215554	0.0184323	0.116493	0.114686
chr1	212993265	212993364	634861	0	-	0.363636	(0.35,0.378]	chr1	74989	12	UTR3	UTR3:EXON_MRNA	ANGEL2	ENSG00000174606.14	ENST00000366962.8:ENST00000360506.6	protein_coding	protein_coding	protein_coding	protein_coding	9	93	2	1.81752	1.92071	2.0239	0.0130467	0.0110441	0.0994973	0.0873897
chr1	2397720	2397819	3059	0	+	0.535354	(0.515,0.57]	chr1	604	1	INTRON	INTRON	RER1	ENSG00000157916.20	ENST00000378513.7:ENST00000378518.5:ENST00000605895.6:ENST00000306256.13:ENST00000378512.5:ENST00000443438.5:ENST00000488353.2	protein_coding	protein_coding	protein_coding	protein_coding	4	31	2	1.60221	1.92068	2.23915	0.0596178	0.0581855	0.188704	0.16883600000000001
chr15	92889710	92889809	6103576	0	+	0.383838	(0.378,0.408]	chr15	581369	10	INTRON	INTRON	CHASERR:ENSG00000279765	ENSG00000272888.8:ENSG00000279765.3	ENST00000653163.1:ENST00000557682.6:ENST00000556895.5:ENST00000554894.5:ENST00000629685.2:ENST00000554133.5:ENST00000630790.1:ENST00000555520.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	14	104	2	1.40479	1.92068	2.43657	0.0166424	0.0106733	0.110511	0.0861859
chr17	8462957	8463047	6555650	0	+	0.533333	(0.515,0.57]	chr17	637360	3	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	NDEL1	ENSG00000166579.16	ENST00000334527.12:ENST00000585098.5:ENST00000380025.8:ENST00000402554.7:ENST00000581679.1:ENST00000583683.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	31	2	1.60221	1.92068	2.23915	0.0596178	0.0581855	0.188704	0.16883600000000001
chr22	39459450	39459549	7515520	0	+	0.474747	(0.44,0.476]	chr22	767911	15	INTRON	INTRON	MGAT3	ENSG00000128268.12	ENST00000341184.7	protein_coding	protein_coding	protein_coding	protein_coding	5	51	2	1.85146	1.92042	1.98938	0.0545846	0.0198602	0.182529	0.109608
chr16	110024	110124	6425472	0	-	0.54	(0.515,0.57]	chr16	617342	1	SS5_PROX	SS5_PROX:INTRON	NPRL3	ENSG00000103148.17	ENST00000611875.5:ENST00000622194.4:ENST00000621703.4:ENST00000399953.7:ENST00000473674.5:ENST00000457916.5:ENST00000483663.5:ENST00000422814.5:ENST00000468260.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	47	2	1.56838	1.9203800000000002	2.27238	0.0424458	0.0161808	0.161763	0.101453
chr10	21693777	21693876	4406027	0	+	0.242424	[0,0.28]	chr10	406535	49	INTRON	INTRON	MLLT10	ENSG00000078403.17	ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000651298.1:ENST00000377059.7:ENST00000651382.1:ENST00000438473.6:ENST00000420525.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	59	2	1.8986	1.92032	1.94204	0.0544139	0.0531512	0.179787	0.164972
chr14	26884170	26884270	5663190	0	+	0.28	[0,0.28]	chr14	540167	28	INTRON	INTRON	ENSG00000258081:MIR4307HG	ENSG00000258081.4:ENSG00000257612.2	ENST00000656336.1:ENST00000550024.1:ENST00000552303.1:ENST00000664825.1:ENST00000657233.1:ENST00000661570.1:ENST00000548170.2:ENST00000654842.1:ENST00000657558.1:ENST00000656237.1:ENST00000667739.1:ENST00000654874.1:ENST00000658815.1:ENST00000667676.1:ENST00000658149.1:ENST00000666037.1:ENST00000666377.1:ENST00000655440.1:ENST00000666571.1:ENST00000653927.1:ENST00000669484.1:ENST00000663099.1:ENST00000653481.1:ENST00000667699.1:ENST00000668735.1:ENST00000656692.1:ENST00000662028.1	lncRNA	lncRNA	lncRNA	lncRNA	4	59	2	1.8986	1.92032	1.94204	0.0544139	0.0531512	0.179787	0.164972
chrX	24743829	24743919	7632208	0	+	0.277778	[0,0.28]	chrX	781704	1	INTRON	INTRON	POLA1	ENSG00000101868.13	ENST00000672178.1:ENST00000379068.8:ENST00000379059.7:ENST00000611764.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	59	2	1.8986	1.92032	1.94204	0.0544139	0.0531512	0.179787	0.164972
chr4	55867	55966	1905312	0	+	0.272727	[0,0.28]	chr4	190993	20	INTRON	INTRON	ZNF595	ENSG00000272602.6	ENST00000608255.2:ENST00000609518.5:ENST00000509152.3:ENST00000610261.6:ENST00000502981.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	142	2	1.83959	1.9202599999999999	2.00093	0.0146743	0.0114094	0.106556	0.0886611
chr1	180500755	180500854	595816	0	-	0.424242	(0.408,0.44]	chr1	71210	49	INTRON	INTRON	ACBD6	ENSG00000230124.8	ENST00000645415.1:ENST00000642319.1:ENST00000367595.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	81	2	1.64527	1.920255	2.19524	0.0175998	0.00990486	0.11319	0.0838372
chr22	20738949	20739048	7558450	0	-	0.525253	(0.515,0.57]	chr22	773045	22	INTRON	INTRON	PI4KA	ENSG00000241973.11	ENST00000255882.11:ENST00000494113.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	57	2	1.43029	1.920255	2.41022	0.0645632	0.00332441	0.179192	0.0528673
chr11	47505864	47505963	4949924	0	-	0.454545	(0.44,0.476]	chr11	464224	46	INTRON	INTRON	CELF1	ENSG00000149187.19	ENST00000310513.10:ENST00000687097.1:ENST00000531165.5:ENST00000532048.5:ENST00000530151.5:ENST00000525841.5:ENST00000528434.5:ENST00000543178.5:ENST00000526419.1:ENST00000528538.5:ENST00000526277.1	protein_coding	protein_coding	protein_coding	protein_coding	6	58	2	1.85904	1.92025	1.98146	0.029889	0.0186013	0.129138	0.117264
chr6	149751461	149751560	2996051	0	+	0.444444	(0.44,0.476]	chr6	280342	8	INTRON	INTRON	PCMT1	ENSG00000120265.19	ENST00000367384.7:ENST00000367378.6:ENST00000484601.6:ENST00000367380.9:ENST00000544496.5:ENST00000649295.1:ENST00000494411.6:ENST00000460828.6:ENST00000464889.7:ENST00000486585.2:ENST00000495487.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	58	2	1.85904	1.92025	1.98146	0.029889	0.0186013	0.129138	0.117264
chr19	8461468	8461568	7010929	0	+	0.4	(0.378,0.408]	chr19	696143	55	INTRON	INTRON	HNRNPM	ENSG00000099783.12	ENST00000348943.7:ENST00000597813.5:ENST00000600092.5:ENST00000325495.9:ENST00000600806.5:ENST00000620401.4:ENST00000594907.5:ENST00000596984.5:ENST00000601645.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	84	2	1.53546	1.920225	2.30499	0.0265688	0.00683258	0.134088	0.0713163
chr6	135210904	135211004	2962470	0	+	0.38	(0.378,0.408]	chr6	278661	71	INTRON	INTRON	MYB	ENSG00000118513.20	ENST00000341911.10:ENST00000442647.7:ENST00000316528.12:ENST00000616088.4:ENST00000339290.9:ENST00000367812.6:ENST00000463282.6:ENST00000525477.5:ENST00000533837.5:ENST00000367814.8:ENST00000525369.5:ENST00000438901.6:ENST00000525514.5:ENST00000526320.5:ENST00000526889.5:ENST00000529586.5:ENST00000531519.5:ENST00000533808.5:ENST00000528343.5:ENST00000524588.5:ENST00000525002.5:ENST00000525940.5:ENST00000526187.5:ENST00000526565.5:ENST00000528015.5:ENST00000528140.5:ENST00000528345.5:ENST00000528774.5:ENST00000529262.5:ENST00000531634.5:ENST00000531737.5:ENST00000533384.5:ENST00000533624.5:ENST00000534044.5:ENST00000534121.5:ENST00000531845.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	77	2	1.37524	1.920165	2.46509	0.0610755	0.00287152	0.172411	0.0494641
chr1	51458886	51458940	453743	0	-	0.5	(0.476,0.515]	chr1	54398	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	EPS15	ENSG00000085832.17	ENST00000371733.8:ENST00000371730.6:ENST00000371727.5:ENST00000464478.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	66	2	1.78315	1.920145	2.05714	0.0215899	0.0156961	0.123836	0.101453
chr17	58002618	58002718	6800003	0	-	0.33	(0.32,0.35]	chr17	671424	18	UTR3	UTR3:EXON_MRNA:INTRON	ENSG00000266086:SRSF1	ENSG00000266086.3:ENSG00000136450.13	ENST00000578794.2:ENST00000665125.1:ENST00000258962.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	22	223	2	1.48347	1.920145	2.35682	0.00991919	9.44625e-4	0.0877296	0.0281279
chr5	177258811	177258907	2554967	0	+	0.4375	(0.408,0.44]	chr5	244014	13	INTRON	INTRON	NSD1	ENSG00000165671.22	ENST00000689549.1:ENST00000354179.9:ENST00000686993.1:ENST00000439151.7:ENST00000689345.1:ENST00000347982.9:ENST00000687453.1:ENST00000685206.1:ENST00000688613.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	59	2	1.8749	1.92012	1.96534	0.0264246	0.0216499	0.133676	0.11491
chr10	70404946	70405046	4447083	0	+	0.49	(0.476,0.515]	chr10	410344	4	SS5_PROX	SS5_PROX:INTRON	EIF4EBP2	ENSG00000148730.7	ENST00000373218.5	protein_coding	protein_coding	protein_coding	protein_coding	9	80	2	1.55902	1.92007	2.28112	0.0242957	0.00700958	0.130919	0.0718189
chr15	65767109	65767187	6209543	0	-	0.346154	(0.32,0.35]	chr15	592614	4	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DENND4A:ENSG00000261544	ENSG00000174485.16:ENSG00000261544.1	ENST00000443035.8:ENST00000431932.6:ENST00000564674.5:ENST00000568515.1:ENST00000567396.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	6	68	2	1.73318	1.920065	2.10695	0.0462868	0.0127483	0.150684	0.0987441
chr9	133252023	133252121	4369790	0	-	0.5	(0.476,0.515]	chr9	402031	23	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	ABO	ENSG00000175164.16	ENST00000679909.1:ENST00000680600.1:ENST00000453660.4:ENST00000647353.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	55	2	1.40757	1.9199950000000001	2.43242	0.0707852	0.0091895	0.184528	0.0855292
chr22	49656171	49656268	7602650	0	-	0.463918	(0.44,0.476]	chr22	778596	1	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	MIR3667HG	ENSG00000188511.13	ENST00000414287.5:ENST00000416411.1:ENST00000689875.1:ENST00000400023.5:ENST00000405854.5:ENST00000685521.1:ENST00000691957.1:ENST00000692970.1:ENST00000689829.1:ENST00000685602.1:ENST00000691490.1:ENST00000692246.1:ENST00000685056.1:ENST00000688300.1:ENST00000684932.1:ENST00000692989.1:ENST00000692092.1:ENST00000686856.1:ENST00000689311.1	lncRNA	lncRNA	lncRNA	lncRNA	6	55	2	1.54868	1.91997	2.29126	0.0457575	0.0165638	0.164677	0.102621
chr2	171035275	171035375	1262828	0	-	0.52	(0.515,0.57]	chr2	133843	65	INTRON	INTRON	TLK1	ENSG00000198586.14	ENST00000431350.7:ENST00000360843.7:ENST00000359766.7:ENST00000521943.5:ENST00000434911.6:ENST00000409443.6:ENST00000413010.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	63	2	1.38593	1.91984	2.45375	0.0554883	0.00273605	0.165463	0.0483437
chr2	161394077	161394177	901977	0	+	0.47	(0.44,0.476]	chr2	99737	25	INTRON	INTRON	PSMD14	ENSG00000115233.12	ENST00000409682.8:ENST00000477232.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	52	2	1.37831	1.91983	2.46135	0.0447298	0.0374637	0.163255	0.140008
chr1	89897326	89897426	160289	0	+	0.39	(0.378,0.408]	chr1	17285	503	INTRON	INTRON	LRRC8D	ENSG00000171492.14	ENST00000525774.5:ENST00000337338.9:ENST00000394593.7:ENST00000532201.5:ENST00000414841.1:ENST00000527156.1:ENST00000441269.2	protein_coding	protein_coding	protein_coding	protein_coding	7	69	2	1.90812	1.919825	1.93153	0.0264295	0.0127237	0.122506	0.0986314
chr16	10396597	10396696	6286383	0	+	0.40404	(0.378,0.408]	chr16	601961	37	INTRON	INTRON	ATF7IP2	ENSG00000166669.14	ENST00000564797.5:ENST00000396559.5:ENST00000396560.6:ENST00000562527.5:ENST00000561932.5:ENST00000543967.5:ENST00000562102.6:ENST00000535850.5:ENST00000569900.5:ENST00000569939.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	69	2	1.90812	1.919825	1.93153	0.0264295	0.0127237	0.122506	0.0986314
chr7	139418523	139418621	3438190	0	+	0.285714	(0.28,0.32]	chr7	320382	4	INTRON	INTRON	LUC7L2:FMC1-LUC7L2	ENSG00000146963.18:ENSG00000269955.2	ENST00000541170.7:ENST00000541515.3:ENST00000619796.4:ENST00000354926.9:ENST00000456182.5:ENST00000263545.7:ENST00000498518.1:ENST00000482860.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	120	2	1.25249	1.91982	2.58715	0.0515126	0.00300718	0.176696	0.0493883
chr17	56896452	56896550	6798964	0	-	0.397959	(0.378,0.408]	chr17	671253	1	INTRON	INTRON	TRIM25	ENSG00000121060.19	ENST00000648772.1:ENST00000682766.1:ENST00000316881.9:ENST00000537230.3:ENST00000572021.6:ENST00000570473.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	90	2	1.20879	1.91968	2.63057	0.0435088	0.0053733	0.162255	0.0642754
chr2	161354402	161354502	901572	0	+	0.4	(0.378,0.408]	chr2	99704	352	INTRON	INTRON	PSMD14	ENSG00000115233.12	ENST00000409682.8:ENST00000437630.1	protein_coding	protein_coding	protein_coding	protein_coding	5	50	2	1.89251	1.91966	1.94681	0.0457723	0.0251428	0.149888	0.133404
chr8	21967103	21967203	3711396	0	+	0.38	(0.378,0.408]	chr8	344409	1	SS5_PROX	SS5_PROX:INTRON	XPO7	ENSG00000130227.17	ENST00000252512.14:ENST00000521303.5:ENST00000519769.5:ENST00000518017.1:ENST00000433566.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	50	2	1.89251	1.91966	1.94681	0.0457723	0.0251428	0.149888	0.133404
chr1	21753813	21753910	396571	0	-	0.391753	(0.378,0.408]	chr1	47332	3	INTRON	INTRON	USP48	ENSG00000090686.16	ENST00000400301.5:ENST00000308271.14:ENST00000529637.5:ENST00000421625.6:ENST00000527823.5:ENST00000532737.1	protein_coding	protein_coding	protein_coding	protein_coding	30	299	2	1.28735	1.91965	2.55195	0.0256222	1.54227e-5	0.120382	0.00295377
chr1	51240776	51240876	98222	0	+	0.43	(0.408,0.44]	chr1	13196	35	INTRON	INTRON	RNF11	ENSG00000123091.5	ENST00000242719.4:ENST00000494873.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	85	2	1.84516	1.919565	1.99397	0.0193431	0.00610802	0.108861	0.0706941
chr1	246927939	246928038	681923	0	-	0.424242	(0.408,0.44]	chr1	80043	92	INTRON	INTRON	AHCTF1	ENSG00000153207.16	ENST00000648844.2:ENST00000326225.3:ENST00000366508.5	protein_coding	protein_coding	protein_coding	protein_coding	15	139	2	1.57853	1.91954	2.26055	0.0118585	0.00154265	0.0962115	0.0357086
chr8	127903039	127903138	3861142	0	+	0.393939	(0.378,0.408]	chr8	355442	1	INTRON	INTRON	PVT1	ENSG00000249859.13	ENST00000667305.1:ENST00000690350.1:ENST00000653522.1:ENST00000664214.1:ENST00000664139.1:ENST00000661830.1:ENST00000657289.1:ENST00000504719.7:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000656880.1:ENST00000660200.1:ENST00000669132.1:ENST00000657211.1:ENST00000653845.1:ENST00000517525.2:ENST00000665856.1:ENST00000651587.1:ENST00000692980.1:ENST00000666353.1:ENST00000657183.1:ENST00000654324.1:ENST00000658556.1:ENST00000657693.1:ENST00000666080.1:ENST00000667539.1:ENST00000521951.1:ENST00000524165.6:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000664293.1:ENST00000657297.1:ENST00000662410.1:ENST00000670795.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000654091.1:ENST00000523328.6:ENST00000657356.1:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000662061.1:ENST00000667204.1:ENST00000656491.1:ENST00000667714.1:ENST00000654105.1:ENST00000665721.1:ENST00000518528.2:ENST00000669416.1:ENST00000660438.1:ENST00000661160.1:ENST00000659326.1:ENST00000665246.1:ENST00000657384.1:ENST00000666842.1:ENST00000517790.2:ENST00000522963.6:ENST00000654369.1:ENST00000661625.1:ENST00000657596.1:ENST00000664995.1:ENST00000656532.1:ENST00000661988.1:ENST00000670714.1:ENST00000669951.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000656693.1:ENST00000668123.1:ENST00000666776.1:ENST00000664299.1:ENST00000669272.1:ENST00000659912.1:ENST00000670532.1:ENST00000660896.1:ENST00000667149.1:ENST00000656396.1:ENST00000523068.2:ENST00000521122.2:ENST00000520913.2:ENST00000519481.6:ENST00000651568.1:ENST00000669082.1:ENST00000665166.1:ENST00000656948.1:ENST00000671088.1:ENST00000664924.1:ENST00000670204.1:ENST00000652695.1:ENST00000670602.1:ENST00000651664.1:ENST00000517838.6:ENST00000663461.1:ENST00000513868.6:ENST00000670626.1:ENST00000653406.1	lncRNA	lncRNA	lncRNA	lncRNA	5	50	2	1.78011	1.91954	2.05897	0.0356367	0.0339294	0.151629	0.134508
chr16	75031664	75031764	6389745	0	+	0.47	(0.44,0.476]	chr16	614482	289	INTRON	INTRON	ZNRF1	ENSG00000186187.12	ENST00000335325.9:ENST00000320619.10:ENST00000567962.5:ENST00000566250.5:ENST00000564320.1:ENST00000568511.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	48	2	1.75627	1.91952	2.08277	0.0380723	0.0309998	0.157702	0.13151
chr21	29028274	29028374	7389999	0	+	0.46	(0.44,0.476]	chr21	752964	3	SS5_PROX	SS5_PROX:INTRON	USP16	ENSG00000156256.15	ENST00000399975.7:ENST00000334352.8:ENST00000474835.5:ENST00000399973.1:ENST00000399976.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	48	2	1.75627	1.91952	2.08277	0.0380723	0.0309998	0.157702	0.13151
chrX	9470238	9470338	7618705	0	+	0.41	(0.408,0.44]	chrX	779938	44	INTRON	INTRON	TBL1X	ENSG00000101849.18	ENST00000407597.7:ENST00000380961.5:ENST00000424279.6:ENST00000645353.2:ENST00000422314.5	protein_coding	protein_coding	protein_coding	protein_coding	5	49	2	1.69172	1.91952	2.14732	0.0486032	0.0237354	0.153946	0.129075
chr11	85991688	85991786	5014048	0	-	0.346939	(0.32,0.35]	chr11	472947	9	INTRON	INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000630913.2:ENST00000529760.5:ENST00000528398.5:ENST00000356360.9:ENST00000529016.5:ENST00000526961.5:ENST00000530542.1	protein_coding	protein_coding	protein_coding	protein_coding	6	68	2	1.69107	1.9195000000000002	2.14793	0.0517392	0.0110079	0.159306	0.0927187
chr1	65267527	65267627	135668	0	+	0.37	(0.35,0.378]	chr1	15346	22	INTRON	INTRON	DNAJC6	ENSG00000116675.16	ENST00000463018.5:ENST00000494710.6:ENST00000263441.11:ENST00000395325.7:ENST00000483402.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	101	2	1.87195	1.9194900000000001	1.96703	0.0135243	0.00738821	0.0949306	0.0769106
chr21	39302670	39302770	7465433	0	-	0.44	(0.408,0.44]	chr21	760568	37	INTRON	INTRON	BRWD1	ENSG00000185658.14	ENST00000333229.6:ENST00000342449.8:ENST00000380800.7:ENST00000341322.4:ENST00000470108.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	21	182	2	1.82832	1.9194749999999998	2.01063	0.00478395	0.00146142	0.0602209	0.0350122
chr6	7127366	7127466	2798559	0	+	0.38	(0.378,0.408]	chr6	263723	183	INTRON	INTRON	RREB1	ENSG00000124782.21	ENST00000379933.7:ENST00000491191.5:ENST00000471433.5:ENST00000379938.7:ENST00000467782.5:ENST00000349384.10:ENST00000334984.10:ENST00000475946.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	70	2	1.66594	1.9194499999999999	2.17296	0.0320222	0.0110512	0.144995	0.0873897
chr5	10387566	10387664	2317990	0	+	0.5	(0.476,0.515]	chr5	224637	1	INTRON	INTRON	MARCHF6	ENSG00000145495.16	ENST00000274140.10:ENST00000449913.6:ENST00000502795.5:ENST00000511802.5:ENST00000503788.5:ENST00000640713.1:ENST00000510872.5:ENST00000507863.1:ENST00000506131.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	66	2	1.79693	1.919435	2.04194	0.0649782	0.00499341	0.179417	0.0646039
chr19	12942548	12942645	7022510	0	+	0.443299	(0.44,0.476]	chr19	698295	12	INTRON	INTRON	CALR	ENSG00000179218.15	ENST00000316448.10:ENST00000586967.2:ENST00000586760.2:ENST00000680816.1:ENST00000588454.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	26	237	2	1.76963	1.9194	2.06917	0.00460859	3.56354e-4	0.0597549	0.0169139
chr17	42273503	42273602	6772200	0	-	0.333333	(0.32,0.35]	chr17	666975	9	INTRON	INTRON	STAT5B:ENSG00000278829	ENSG00000173757.10:ENSG00000278829.1	ENST00000293328.8:ENST00000468312.1:ENST00000415845.1:ENST00000617211.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	7	78	2	1.57443	1.919365	2.2643	0.048436	0.00712852	0.153635	0.0756118
chr21	37512729	37512829	7407706	0	+	0.43	(0.408,0.44]	chr21	754961	3	UTR3	UTR3:EXON_MRNA	DYRK1A	ENSG00000157540.22	ENST00000647188.2:ENST00000647504.1:ENST00000644942.1:ENST00000338785.8:ENST00000643624.1:ENST00000398960.7:ENST00000646548.1	protein_coding	protein_coding	protein_coding	protein_coding	9	81	2	1.57433	1.919365	2.2644	0.0229059	0.00768371	0.12581	0.0753803
chr11	74198441	74198541	4826793	0	+	0.46	(0.44,0.476]	chr11	450450	266	INTRON	INTRON	PPME1	ENSG00000214517.10	ENST00000542710.3:ENST00000328257.13:ENST00000398427.6:ENST00000544401.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	36	2	1.62896	1.919225	2.20949	0.0672585	0.0546679	0.183051	0.182674
chr17	82529691	82529791	6692704	0	+	0.47	(0.44,0.476]	chr17	654627	90	INTRON	INTRON	FOXK2	ENSG00000141568.21	ENST00000473637.6:ENST00000335255.10:ENST00000527313.6:ENST00000570585.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	36	2	1.62896	1.919225	2.20949	0.0672585	0.0546679	0.183051	0.182674
chr9	34180732	34180832	4111285	0	+	0.3	(0.28,0.32]	chr9	374718	11	INTRON	INTRON	UBAP1	ENSG00000165006.14	ENST00000625521.2:ENST00000379186.8:ENST00000297661.9:ENST00000626262.2	protein_coding	protein_coding	protein_coding	protein_coding	9	104	2	1.80728	1.91917	2.03106	0.0208123	0.0108259	0.111549	0.0920575
chr16	85598321	85598421	6415815	0	+	0.67	(0.57,1]	chr16	615470	416	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	10	49	2	1.73563	1.919115	2.1026	0.017048	0.00326268	0.110899	0.0508595
chr7	7245223	7245323	3275226	0	+	0.55	(0.515,0.57]	chr7	304598	16	UTR3	UTR3:EXON_MRNA	C1GALT1	ENSG00000106392.11	ENST00000436587.7	protein_coding	protein_coding	protein_coding	protein_coding	8	57	2	1.2997	1.919075	2.53845	0.0561321	0.00632226	0.18407	0.0687526
chr1	32660553	32660653	65924	0	+	0.44	(0.408,0.44]	chr1	8422	26	INTRON	INTRON	RBBP4	ENSG00000162521.19	ENST00000414241.7:ENST00000527118.5:ENST00000373493.10:ENST00000401893.7:ENST00000524393.5:ENST00000492348.6:ENST00000526193.5:ENST00000373485.5:ENST00000477563.6:ENST00000458695.6:ENST00000445722.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	93	2	1.54382	1.9190399999999999	2.29426	0.0284747	0.00277178	0.12666	0.04874
chr17	39381787	39381886	6766454	0	-	0.545455	(0.515,0.57]	chr17	665497	382	INTRON	INTRON	FBXL20	ENSG00000108306.13	ENST00000264658.11:ENST00000583610.5:ENST00000394294.7:ENST00000577399.5:ENST00000647139.1	protein_coding	protein_coding	protein_coding	protein_coding	11	86	2	1.14264	1.91903	2.69542	0.0774783	3.15632e-4	0.196285	0.0159645
chr1	153807896	153807995	556594	0	-	0.40404	(0.378,0.408]	chr1	65923	33	UTR3	UTR3:EXON_MRNA:INTRON	GATAD2B	ENSG00000143614.10	ENST00000637918.1:ENST00000368655.5	protein_coding	protein_coding	protein_coding	protein_coding	8	77	2	1.63086	1.91899	2.20712	0.0252353	0.00978751	0.133676	0.0835427
chr2	111494976	111495068	1211813	0	-	0.347826	(0.32,0.35]	chr2	128949	2	EXON_LNCRNA	EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MIR4435-2HG	ENSG00000172965.17	ENST00000645030.2:ENST00000673798.1:ENST00000645051.2:ENST00000673649.1:ENST00000669658.1:ENST00000669917.1:ENST00000661559.1:ENST00000653687.1:ENST00000667670.1:ENST00000609220.2:ENST00000656760.1:ENST00000609902.6:ENST00000666683.1:ENST00000674070.1:ENST00000662335.1:ENST00000664422.1:ENST00000673775.1:ENST00000674092.1:ENST00000658936.1:ENST00000662635.1:ENST00000666204.1:ENST00000659458.1:ENST00000664443.1:ENST00000670295.1:ENST00000661655.1:ENST00000666390.1:ENST00000659079.1:ENST00000660442.1:ENST00000664009.1:ENST00000439362.6:ENST00000654473.1:ENST00000664999.1:ENST00000673728.1:ENST00000659791.1:ENST00000666144.1:ENST00000659933.1:ENST00000670715.1:ENST00000653568.1:ENST00000643013.1:ENST00000673866.1:ENST00000443467.6:ENST00000669875.1:ENST00000673988.1:ENST00000661945.1:ENST00000669515.1:ENST00000431385.6:ENST00000656416.1:ENST00000674037.1:ENST00000432818.5:ENST00000674013.1:ENST00000444301.5:ENST00000673964.1:ENST00000673845.1:ENST00000673756.1:ENST00000673960.1:ENST00000673804.1:ENST00000673632.1:ENST00000453478.2:ENST00000673937.1:ENST00000673654.1:ENST00000409569.2:ENST00000674087.1:ENST00000419736.5:ENST00000673840.1:ENST00000643766.1:ENST00000308604.5:ENST00000604981.5:ENST00000441075.1:ENST00000673878.1:ENST00000673668.1	lncRNA	lncRNA	lncRNA	lncRNA	15	146	2	1.31321	1.91894	2.52467	0.0285104	0.00164175	0.138847	0.0369207
chr17	58002718	58002818	6800004	0	-	0.53	(0.515,0.57]	chr17	671424	19	UTR3	UTR3:EXON_MRNA:INTRON	ENSG00000266086:SRSF1	ENSG00000266086.3:ENSG00000136450.13	ENST00000578794.2:ENST00000665125.1:ENST00000258962.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	15	96	2	1.10434	1.9189	2.73346	0.0497608	8.38802e-4	0.17488	0.0266487
chr1	246074656	246074755	676378	0	-	0.40404	(0.378,0.408]	chr1	79717	212	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000391836.3:ENST00000464398.1:ENST00000453676.5:ENST00000462422.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	69	2	1.86598	1.91869	1.9714	0.0300232	0.0109363	0.129138	0.0924799
chr6	26124749	26124849	2836999	0	+	0.38	(0.378,0.408]	chr6	266008	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	H2AC6	ENSG00000180573.10	ENST00000314088.6:ENST00000602637.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	17	151	2	1.69917	1.918685	2.1382	0.00436477	0.00426428	0.0603613	0.0573912
chr11	59556425	59556524	4794619	0	+	0.525253	(0.515,0.57]	chr11	443927	101	INTRON	INTRON	ENSG00000287264	ENSG00000287264.1	ENST00000659845.1	lncRNA	lncRNA	lncRNA	lncRNA	50	363	2	1.73632	1.91857	2.10082	5.80535e-4	2.84465e-4	0.0218949	0.015495
chr6	7199612	7199712	2799288	0	+	0.41	(0.408,0.44]	chr6	263761	99	INTRON	INTRON	RREB1	ENSG00000124782.21	ENST00000379933.7:ENST00000471433.5:ENST00000379938.7:ENST00000349384.10:ENST00000334984.10:ENST00000475946.5:ENST00000483150.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	78	2	1.79818	1.9185699999999999	2.03896	0.020428	0.00968464	0.122109	0.0828348
chr10	73058077	73058177	4647453	0	-	0.31	(0.28,0.32]	chr10	427530	41	INTRON	INTRON	P4HA1	ENSG00000122884.13	ENST00000394890.7:ENST00000307116.6:ENST00000373008.6:ENST00000440381.5:ENST00000263556.3	protein_coding	protein_coding	protein_coding	protein_coding	19	224	2	1.80033	1.91846	2.03659	0.00956835	0.00125569	0.0820838	0.0329496
chr19	28458266	28458365	7165671	0	-	0.393939	(0.378,0.408]	chr19	724169	8	INTRON	INTRON	ENSG00000283403:ENSG00000267243	ENSG00000283403.1:ENSG00000267243.6	ENST00000592347.5:ENST00000593065.5:ENST00000592716.1:ENST00000591920.5	lncRNA	lncRNA	lncRNA	lncRNA	8	79	2	1.71619	1.91845	2.12071	0.0300647	0.00601933	0.129153	0.0700813
chr11	87096990	87097090	4843404	0	+	0.54	(0.515,0.57]	chr11	451856	52	INTRON	INTRON	TMEM135	ENSG00000166575.17	ENST00000340353.11:ENST00000529023.5:ENST00000526733.5:ENST00000305494.6:ENST00000532959.5:ENST00000525018.5:ENST00000531800.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	80	2	1.80295	1.918315	2.03368	0.00965183	0.00803127	0.0826279	0.0803474
chr1	224135907	224136006	321330	0	+	0.575758	(0.57,1]	chr1	37008	13	INTRON	INTRON	FBXO28	ENSG00000143756.12	ENST00000366862.10:ENST00000424254.6:ENST00000523990.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	55	2	1.30159	1.918305	2.53502	0.0400049	6.60462e-4	0.161534	0.023462
chrX	123998170	123998270	7717117	0	+	0.48	(0.476,0.515]	chrX	789462	344	INTRON	INTRON	STAG2	ENSG00000101972.20	ENST00000394477.5:ENST00000218089.13:ENST00000455404.5:ENST00000483575.5:ENST00000687810.1:ENST00000687071.1:ENST00000469481.1:ENST00000458700.5:ENST00000371160.5:ENST00000435103.5:ENST00000687852.1:ENST00000371145.8:ENST00000692982.1:ENST00000371157.7:ENST00000691035.1:ENST00000686802.1:ENST00000691383.1:ENST00000686127.1:ENST00000371144.7:ENST00000458176.5:ENST00000466748.5:ENST00000471107.1:ENST00000428941.5:ENST00000435215.5:ENST00000394478.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	13	104	2	1.48791	1.9182899999999998	2.34867	0.0149073	0.00539703	0.10728	0.0644048
chr7	105051892	105051991	3375001	0	+	0.393939	(0.378,0.408]	chr7	315877	105	INTRON	INTRON	KMT2E	ENSG00000005483.22	ENST00000622386.2:ENST00000257745.9:ENST00000334884.9:ENST00000311117.8:ENST00000478990.5:ENST00000495267.5:ENST00000476671.5:ENST00000667857.1:ENST00000474203.5:ENST00000482560.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	14	113	2	1.35368	1.9182450000000002	2.48281	0.0228331	0.00340454	0.125506	0.0517761
chr1	112621381	112621481	186344	0	+	0.51	(0.476,0.515]	chr1	20636	11	INTRON	INTRON	CAPZA1	ENSG00000116489.13	ENST00000485542.5:ENST00000476936.5:ENST00000263168.4:ENST00000498626.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	97	2	1.65426	1.918025	2.18179	0.0231344	0.00322689	0.126939	0.0507087
chr6	37858795	37858895	2857423	0	+	0.37	(0.35,0.378]	chr6	270225	384	INTRON	INTRON	ZFAND3	ENSG00000156639.12	ENST00000287218.9:ENST00000373391.6:ENST00000474522.5	protein_coding	protein_coding	protein_coding	protein_coding	7	67	2	1.59904	1.917775	2.23651	0.0285976	0.020879	0.139244	0.111766
chr16	47464293	47464393	6343331	0	+	0.34	(0.32,0.35]	chr16	608848	3	SS5_PROX	SS5_PROX:INTRON	PHKB	ENSG00000102893.17	ENST00000566037.6:ENST00000566044.5:ENST00000299167.12:ENST00000696809.1:ENST00000323584.10:ENST00000565424.2:ENST00000567402.5:ENST00000563376.5:ENST00000564873.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	68	2	1.64769	1.9177300000000002	2.18777	0.0578603	0.00951422	0.167723	0.0863913
chr18	2730006	2730104	6865639	0	+	0.326531	(0.32,0.35]	chr18	680074	2	INTRON	INTRON	SMCHD1	ENSG00000101596.17	ENST00000320876.11:ENST00000688342.1:ENST00000693213.1:ENST00000577880.5:ENST00000584897.5:ENST00000583441.2:ENST00000690757.1:ENST00000581631.1:ENST00000686763.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	68	2	1.64769	1.9177300000000002	2.18777	0.0578603	0.00951422	0.167723	0.0863913
chr7	158805365	158805465	3689572	0	-	0.34	(0.32,0.35]	chr7	342421	59	INTRON	INTRON	ESYT2	ENSG00000117868.18	ENST00000251527.10:ENST00000275418.13:ENST00000652148.1:ENST00000483958.5:ENST00000497111.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	68	2	1.64769	1.9177300000000002	2.18777	0.0578603	0.00951422	0.167723	0.0863913
chr12	116199971	116200070	5424771	0	-	0.50505	(0.476,0.515]	chr12	518271	188	INTRON	INTRON	MED13L	ENSG00000123066.9	ENST00000281928.9:ENST00000650226.1:ENST00000548743.2:ENST00000647567.1:ENST00000551197.2	protein_coding	protein_coding	protein_coding	protein_coding	7	63	2	1.84346	1.917715	1.99197	0.039572	0.0114152	0.143072	0.095586
chrX	136860328	136860427	7897475	0	-	0.393939	(0.378,0.408]	chrX	804139	114	INTRON	INTRON	RBMX	ENSG00000147274.14	ENST00000561733.5	protein_coding	processed_transcript	protein_coding	processed_transcript	6	58	2	1.48005	1.9176600000000001	2.35527	0.0596711	0.0121511	0.168954	0.0963966
chr14	35024655	35024752	5691474	0	+	0.309278	(0.28,0.32]	chr14	541316	12	INTRON	INTRON	SRP54	ENSG00000100883.13	ENST00000556994.5:ENST00000678836.1:ENST00000546080.6:ENST00000555746.6:ENST00000678963.1:ENST00000678477.1:ENST00000677621.1:ENST00000678519.1:ENST00000678627.1:ENST00000216774.11:ENST00000555557.5:ENST00000678274.1:ENST00000677647.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	72	2	1.86684	1.9176250000000001	1.96841	0.0605813	0.0124199	0.171122	0.0973643
chr6	90516402	90516500	3162070	0	-	0.316327	(0.28,0.32]	chr6	294892	30	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	MAP3K7	ENSG00000135341.18	ENST00000369332.7:ENST00000369327.7:ENST00000369325.7:ENST00000369329.8:ENST00000479630.1:ENST00000369320.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	72	2	1.86684	1.9176250000000001	1.96841	0.0605813	0.0124199	0.171122	0.0973643
chr5	1629256	1629350	2566255	0	-	0.468085	(0.44,0.476]	chr5	245815	9	EXON_LNCRNA	EXON_LNCRNA:SS3_PROX:INTRON	PDCD6P1	ENSG00000188002.11	ENST00000507841.5:ENST00000512335.5:ENST00000692393.1:ENST00000507290.5:ENST00000690809.1:ENST00000688433.1:ENST00000507505.5:ENST00000691115.1:ENST00000502273.7:ENST00000522848.5:ENST00000689007.1:ENST00000690916.1:ENST00000686018.1:ENST00000687772.1:ENST00000693722.1:ENST00000690945.1:ENST00000343123.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	7	61	2	1.4962	1.917595	2.33899	0.0392301	0.0142027	0.161534	0.0959987
chr2	28895453	28895540	725182	0	+	0.402299	(0.378,0.408]	chr2	83776	1	SS5_PROX	SS5_PROX:INTRON	WDR43	ENSG00000163811.12	ENST00000407426.8:ENST00000434238.1	protein_coding	protein_coding	protein_coding	protein_coding	9	90	2	1.63086	1.9175900000000001	2.20432	0.0252353	0.00529064	0.133676	0.0636343
chr5	54009910	54010010	2617903	0	-	0.48	(0.476,0.515]	chr5	248835	979	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	20	175	2	1.50714	1.91756	2.32798	0.00944955	7.12805e-4	0.0862013	0.0244599
chr10	56357523	56357623	4621669	0	-	0.35	(0.32,0.35]	chr10	425544	4	UTR3	UTR3:EXON_MRNA	ZWINT	ENSG00000122952.17	ENST00000373944.8:ENST00000395405.5:ENST00000494312.5:ENST00000318387.6:ENST00000489649.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	109	2	1.30436	1.917495	2.53063	0.0642897	0.00105397	0.178531	0.0299229
chr1	28506995	28507088	57177	0	+	0.397849	(0.378,0.408]	chr1	7378	8	EXON_MRNA	EXON_MRNA:INTRON	RCC1:SNHG3	ENSG00000180198.17:ENSG00000242125.3	ENST00000398958.6:ENST00000649185.1:ENST00000413987.1:ENST00000427469.5:ENST00000683442.1:ENST00000447507.1:ENST00000434290.6:ENST00000373833.10:ENST00000437681.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	115	1136	2	1.7901	1.9174799999999999	2.04486	3.93521e-4	1.65293e-4	0.0178567	0.0117727
chr1	244660417	244660517	347784	0	+	0.52	(0.515,0.57]	chr1	40357	40	INTRON	INTRON	DESI2	ENSG00000121644.19	ENST00000263831.11:ENST00000302550.16:ENST00000418162.1	protein_coding	protein_coding	protein_coding	protein_coding	5	41	2	1.81744	1.917405	2.01737	0.0352218	0.031028	0.143457	0.137535
chr22	41284400	41284500	7591136	0	-	0.52	(0.515,0.57]	chr22	777374	1	SS5_PROX	SS5_PROX:INTRON	RANGAP1	ENSG00000100401.20	ENST00000356244.8:ENST00000405486.5:ENST00000422838.1	protein_coding	protein_coding	protein_coding	protein_coding	5	41	2	1.81744	1.917405	2.01737	0.0352218	0.031028	0.143457	0.137535
chr1	21044969	21045069	392301	0	-	0.47	(0.44,0.476]	chr1	46809	418	INTRON	INTRON	EIF4G3	ENSG00000075151.24	ENST00000374935.7:ENST00000602326.6:ENST00000685872.1:ENST00000264211.13:ENST00000686579.1:ENST00000688741.1:ENST00000684485.1:ENST00000681717.1:ENST00000681767.1:ENST00000400422.6:ENST00000634879.2:ENST00000693470.1:ENST00000685814.1:ENST00000356916.7:ENST00000682284.1:ENST00000438975.5:ENST00000411888.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	40	2	1.9039	1.91737	1.93084	0.0501498	0.0443175	0.162302	0.156383
chr7	2374339	2374433	3269834	0	+	0.446809	(0.44,0.476]	chr7	303855	14	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	EIF3B	ENSG00000106263.19	ENST00000360876.9:ENST00000397011.2:ENST00000475415.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	40	2	1.9039	1.91737	1.93084	0.0501498	0.0443175	0.162302	0.156383
chr9	137623954	137624053	4223521	0	+	0.444444	(0.44,0.476]	chr9	388152	35	INTRON	INTRON	EHMT1	ENSG00000181090.21	ENST00000462484.5:ENST00000371394.6:ENST00000630754.2:ENST00000460843.6:ENST00000626216.2:ENST00000637593.1:ENST00000629335.2:ENST00000637335.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	40	2	1.9039	1.91737	1.93084	0.0501498	0.0443175	0.162302	0.156383
chr16	29603734	29603833	6471638	0	-	0.525253	(0.515,0.57]	chr16	625301	89	INTRON	INTRON	ENSG00000288632	ENSG00000288632.1	ENST00000675579.1	lncRNA	lncRNA	lncRNA	lncRNA	5	41	2	1.7492	1.917335	2.08547	0.0382504	0.0289426	0.15832	0.1274
chrX	71410542	71410641	7678689	0	+	0.525253	(0.515,0.57]	chrX	786269	20	INTRON	INTRON	TAF1	ENSG00000147133.17	ENST00000683202.1:ENST00000373790.9:ENST00000423759.6:ENST00000683782.1:ENST00000683668.1:ENST00000276072.9:ENST00000463163.5:ENST00000373775.8:ENST00000485087.6:ENST00000437147.8:ENST00000683358.1:ENST00000682124.1:ENST00000461764.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	41	2	1.7492	1.917335	2.08547	0.0382504	0.0289426	0.15832	0.1274
chr3	11315893	11315993	1364835	0	+	0.46	(0.44,0.476]	chr3	143871	4	SS5_PROX	SS5_PROX:INTRON	ATG7	ENSG00000197548.13	ENST00000693202.1:ENST00000435760.6:ENST00000685771.1:ENST00000354449.7:ENST00000354956.9:ENST00000446450.6:ENST00000488924.5:ENST00000424071.5:ENST00000434066.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	50	2	1.90381	1.917325	1.93084	0.0443175	0.0260626	0.162302	0.122153
chr2	167923031	167923131	1259033	0	-	0.58	(0.57,1]	chr2	133340	219	INTRON	INTRON	B3GALT1-AS1	ENSG00000235335.3	ENST00000430546.2:ENST00000657553.1:ENST00000670221.1:ENST00000436982.2	lncRNA	lncRNA	lncRNA	lncRNA	15	73	2	1.5281	1.9172950000000002	2.30649	0.0165137	3.72698e-4	0.110411	0.0179087
chr3	138824812	138824912	1831401	0	-	0.41	(0.408,0.44]	chr3	184062	279	INTRON	INTRON	PIK3CB	ENSG00000051382.9	ENST00000674063.1:ENST00000477593.5:ENST00000462898.5:ENST00000483968.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	14	130	2	1.74225	1.9172449999999999	2.09224	0.00710219	0.00335036	0.0756104	0.051415
chr18	702505	702604	6939677	0	-	0.515152	(0.476,0.515]	chr18	686437	48	INTRON	INTRON	ENOSF1	ENSG00000132199.20	ENST00000647584.2:ENST00000383578.7:ENST00000340116.12:ENST00000581475.5:ENST00000580982.5:ENST00000585128.6:ENST00000584453.5:ENST00000578651.5:ENST00000585004.5:ENST00000579053.5:ENST00000583771.1:ENST00000580605.5:ENST00000581332.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	14	110	2	1.17528	1.917195	2.65911	0.0480468	0.00116074	0.153019	0.0314098
chr8	11806274	11806372	3702557	0	+	0.459184	(0.44,0.476]	chr8	343487	24	INTRON	INTRON	FDFT1	ENSG00000079459.13	ENST00000538689.4:ENST00000615631.4:ENST00000618539.4:ENST00000530337.5:ENST00000623368.3:ENST00000446331.6:ENST00000443614.6:ENST00000220584.9:ENST00000525607.5:ENST00000525283.5:ENST00000529464.5:ENST00000525900.5:ENST00000528812.5:ENST00000622850.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	13	124	2	1.64563	1.91718	2.18873	0.0363922	5.64641e-4	0.138959	0.021704
chr15	52550037	52550137	6177122	0	-	0.44	(0.408,0.44]	chr15	588878	31	UTR3	UTR3:EXON_MRNA	ARPP19	ENSG00000128989.11	ENST00000566423.5:ENST00000249822.9:ENST00000561650.5	protein_coding	protein_coding	protein_coding	protein_coding	18	158	2	1.20074	1.917115	2.63349	0.0415737	1.34004e-4	0.146571	0.00998237
chr5	137990712	137990812	2730372	0	-	0.49	(0.476,0.515]	chr5	256973	20	INTRON	INTRON	FAM13B	ENSG00000031003.11	ENST00000689681.1:ENST00000033079.7:ENST00000425075.6:ENST00000420893.6	protein_coding	protein_coding	protein_coding	protein_coding	7	66	2	1.83961	1.91709	1.99457	0.0314489	0.009924	0.13151	0.0877296
chr9	124660807	124660907	4348110	0	-	0.36	(0.35,0.378]	chr9	399255	651	INTRON	INTRON	NR6A1	ENSG00000148200.17	ENST00000487099.7:ENST00000373584.7:ENST00000416460.6:ENST00000344523.8	protein_coding	protein_coding	protein_coding	protein_coding	4	39	2	1.58862	1.916985	2.24535	0.0647516	0.0615516	0.193423	0.179192
chr6	87241383	87241482	2914125	0	+	0.373737	(0.35,0.378]	chr6	275317	75	INTRON	INTRON	ZNF292	ENSG00000188994.13	ENST00000369577.8:ENST00000518845.1:ENST00000339907.8:ENST00000496806.2:ENST00000466062.2	protein_coding	protein_coding	protein_coding	protein_coding	14	141	2	1.83583	1.9169450000000001	1.99806	0.00563025	0.00495196	0.0653997	0.0646039
chr17	42480893	42480965	6611519	0	+	0.375	(0.35,0.378]	chr17	644110	3	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	ATP6V0A1	ENSG00000033627.17	ENST00000393829.6:ENST00000343619.9:ENST00000537728.5:ENST00000264649.10:ENST00000585525.5:ENST00000544137.5:ENST00000589727.5:ENST00000587375.1:ENST00000587882.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	82	2	1.63291	1.916935	2.20096	0.0289396	0.0087123	0.1274	0.0844834
chr5	66165491	66165590	2372711	0	+	0.292929	(0.28,0.32]	chr5	228682	7	EXON_MRNA	EXON_MRNA:INTRON	SREK1	ENSG00000153914.16	ENST00000334121.11:ENST00000520953.5:ENST00000522912.5:ENST00000524111.5:ENST00000380918.7:ENST00000284041.7:ENST00000520580.5:ENST00000519259.5:ENST00000523655.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	109	2	1.42366	1.916625	2.40959	0.0587737	0.00207334	0.167915	0.0422762
chr7	76581308	76581408	3340681	0	+	0.3	(0.28,0.32]	chr7	311170	294	INTRON	INTRON	ENSG00000205485	ENSG00000205485.13	ENST00000418663.5:ENST00000450661.1:ENST00000423084.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	9	109	2	1.42366	1.916625	2.40959	0.0587737	0.00207334	0.167915	0.0422762
chr22	41877521	41877601	7526450	0	+	0.4875	(0.476,0.515]	chr22	769392	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SREBF2	ENSG00000198911.12	ENST00000612482.4:ENST00000361204.9:ENST00000424354.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	103	2	1.6612	1.916515	2.17183	0.0245383	0.00174985	0.12011	0.0386524
chr2	15486819	15486917	1072414	0	-	0.346939	(0.32,0.35]	chr2	114423	31	INTRON	INTRON	NBAS	ENSG00000151779.13	ENST00000281513.10:ENST00000427792.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	121	2	1.46859	1.9164500000000002	2.36431	0.0399069	0.00127288	0.14308	0.0331457
chr1	39861312	39861412	428049	0	-	0.36	(0.35,0.378]	chr1	52020	35	INTRON	INTRON	TRIT1	ENSG00000043514.17	ENST00000316891.10:ENST00000648678.1:ENST00000537440.5:ENST00000372818.5:ENST00000462797.5:ENST00000441669.6:ENST00000495175.6:ENST00000491865.5:ENST00000541099.5:ENST00000492612.6:ENST00000489945.5:ENST00000486825.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	10	95	2	1.422	1.9164400000000001	2.41088	0.032366	0.0047981	0.145026	0.0602209
chr15	20497758	20497858	6118860	0	-	0.38	(0.378,0.408]	chr15	582481	139	INTRON	INTRON	HERC2P3	ENSG00000180229.12	ENST00000428453.5:ENST00000437318.5:ENST00000430598.5:ENST00000429257.5:ENST00000414804.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	5	50	2	1.88729	1.91644	1.94559	0.0532327	0.0211434	0.162538	0.122929
chr18	73248495	73248595	6988458	0	-	0.4	(0.378,0.408]	chr18	691704	474	INTRON	INTRON	LINC02864	ENSG00000263711.6	ENST00000584544.5:ENST00000581011.5:ENST00000581862.6:ENST00000669547.1:ENST00000661525.1:ENST00000583405.5	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	5	50	2	1.88729	1.91644	1.94559	0.0532327	0.0211434	0.162538	0.122929
chr2	55019901	55020001	1121101	0	-	0.31	(0.28,0.32]	chr2	120149	55	INTRON	INTRON	RTN4	ENSG00000115310.19	ENST00000404909.5:ENST00000394611.6:ENST00000317610.11:ENST00000357732.8:ENST00000337526.11:ENST00000357376.7:ENST00000405240.5:ENST00000438462.1	protein_coding	protein_coding	protein_coding	protein_coding	12	92	2	1.10188	1.916325	2.73077	0.0615396	0.0220748	0.193423	0.115395
chr10	87879323	87879423	4483086	0	+	0.48	(0.476,0.515]	chr10	412553	3	SS5_PROX	SS5_PROX:INTRON	PTEN	ENSG00000171862.12	ENST00000688308.1:ENST00000693560.1:ENST00000371953.8:ENST00000688158.1:ENST00000686459.1:ENST00000462694.1:ENST00000416679.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	48	2	1.61586	1.916315	2.21677	0.0567093	0.0207026	0.185107	0.110999
chr9	125237844	125237942	4352462	0	-	0.530612	(0.515,0.57]	chr9	399596	8	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	HSPA5	ENSG00000044574.9	ENST00000324460.7:ENST00000680257.1:ENST00000679355.1:ENST00000681045.1:ENST00000681424.1:ENST00000681675.1:ENST00000681544.1:ENST00000680272.1:ENST00000679475.1:ENST00000680494.1:ENST00000681774.1:ENST00000680640.1:ENST00000680032.1:ENST00000681540.1:ENST00000680234.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	14	109	2	1.88847	1.916225	1.94398	0.0052852	0.00323821	0.0635894	0.0524329
chr2	53711690	53711790	1117945	0	-	0.49	(0.476,0.515]	chr2	119764	108	INTRON	INTRON	ASB3	ENSG00000115239.24	ENST00000406053.5:ENST00000263634.8:ENST00000406625.6:ENST00000482829.5:ENST00000394717.3:ENST00000406687.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	99	2	1.52127	1.9162	2.31113	0.0243835	0.00258657	0.12011	0.0469354
chr7	155750652	155750752	3452974	0	+	0.31	(0.28,0.32]	chr7	322730	36	INTRON	INTRON	RBM33	ENSG00000184863.11	ENST00000401878.8:ENST00000392761.3:ENST00000438356.1:ENST00000341148.7	protein_coding	protein_coding	protein_coding	protein_coding	7	85	2	1.54521	1.916175	2.28714	0.0548272	0.00696126	0.165463	0.0754576
chr17	46336477	46336575	6785833	0	-	0.540816	(0.515,0.57]	chr17	669305	17	UTR3	UTR3:EXON_MRNA:INTRON	ARL17B	ENSG00000228696.10	ENST00000570618.5:ENST00000656849.1:ENST00000434041.6:ENST00000572991.5:ENST00000622877.4:ENST00000575698.5:ENST00000575960.5:ENST00000571246.5:ENST00000450673.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	13	100	2	1.49208	1.916095	2.34011	0.0205876	0.00106662	0.110999	0.0300133
chr12	123362904	123363003	5445189	0	-	0.454545	(0.44,0.476]	chr12	521118	121	INTRON	INTRON	SBNO1	ENSG00000139697.14	ENST00000602398.3:ENST00000267176.8	protein_coding	protein_coding	protein_coding	protein_coding	10	92	2	1.41577	1.9160249999999999	2.41628	0.042743	0.00156262	0.148082	0.0365263
chr9	133259024	133259122	4369866	0	-	0.408163	(0.378,0.408]	chr9	402050	5	INTRON	INTRON	ABO	ENSG00000175164.16	ENST00000679909.1:ENST00000453660.4:ENST00000647353.1:ENST00000611156.4:ENST00000538324.2:ENST00000651471.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	115	2	1.5592	1.91602	2.27284	0.0224236	0.00173415	0.11692	0.03851
chr10	28549449	28549549	4413968	0	+	0.42	(0.408,0.44]	chr10	407148	110	INTRON	INTRON	WAC	ENSG00000095787.24	ENST00000680735.1:ENST00000375664.8:ENST00000428935.6:ENST00000651598.1:ENST00000628285.3:ENST00000681112.1:ENST00000679570.1:ENST00000375646.5:ENST00000354911.9:ENST00000347934.8:ENST00000420266.6:ENST00000651885.1:ENST00000651441.1:ENST00000679398.1:ENST00000424454.5:ENST00000442148.6:ENST00000448193.5:ENST00000414108.6:ENST00000679428.1:ENST00000439676.5:ENST00000345541.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	83	2	1.71745	1.9159599999999999	2.11447	0.0285207	0.0079291	0.12666	0.0797304
chr19	10727340	10727440	7013862	0	+	0.4	(0.378,0.408]	chr19	696920	83	INTRON	INTRON	DNM2	ENSG00000079805.19	ENST00000683738.1:ENST00000682285.1:ENST00000682524.1:ENST00000355667.11:ENST00000389253.9:ENST00000585892.5:ENST00000359692.10:ENST00000408974.8:ENST00000586939.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	79	2	1.64169	1.915815	2.18994	0.0377255	0.00448961	0.14078	0.0612035
chr1	227315404	227315504	651690	0	-	0.29	(0.28,0.32]	chr1	77110	503	INTRON	INTRON	CDC42BPA	ENSG00000143776.20	ENST00000366766.8:ENST00000366769.7:ENST00000334218.9:ENST00000366767.7:ENST00000366764.8:ENST00000478573.6:ENST00000682551.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	51	2	1.86684	1.9157950000000001	1.96475	0.0605813	0.0428385	0.171122	0.162255
chr21	39193438	39193537	7464293	0	-	0.30303	(0.28,0.32]	chr21	760356	62	UTR3	UTR3:EXON_MRNA:INTRON	BRWD1	ENSG00000185658.14	ENST00000333229.6:ENST00000342449.8:ENST00000446924.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	51	2	1.86684	1.9157950000000001	1.96475	0.0605813	0.0428385	0.171122	0.162255
chr7	103349760	103349859	3373653	0	+	0.353535	(0.35,0.378]	chr7	315781	11	INTRON	INTRON	PSMC2	ENSG00000161057.13	ENST00000678493.1:ENST00000457587.5:ENST00000679205.1:ENST00000679341.1:ENST00000435765.5:ENST00000679250.1:ENST00000679046.1:ENST00000292644.5:ENST00000677281.1:ENST00000425206.6:ENST00000678488.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	60	2	1.59505	1.91578	2.23651	0.040425	0.020879	0.161534	0.111766
chr9	121180999	121181098	4336198	0	-	0.40404	(0.378,0.408]	chr9	398423	30	UTR3	UTR3:EXON_MRNA	RAB14	ENSG00000119396.11	ENST00000373840.9	protein_coding	protein_coding	protein_coding	protein_coding	8	70	2	1.57136	1.9157250000000001	2.26009	0.0233757	0.0188651	0.128037	0.108861
chr6	7288989	7289086	3053138	0	-	0.319588	(0.28,0.32]	chr6	283933	12	UTR3	UTR3:EXON_MRNA:INTRON	SSR1	ENSG00000124783.14	ENST00000474597.5:ENST00000650389.1:ENST00000475213.1:ENST00000244763.9:ENST00000397511.6:ENST00000489567.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	136	2	1.61367	1.915705	2.21774	0.014518	0.00649055	0.105495	0.0699952
chr1	65341313	65341412	136408	0	+	0.444444	(0.44,0.476]	chr1	15352	310	INTRON	INTRON	DNAJC6	ENSG00000116675.16	ENST00000463018.5:ENST00000494710.6:ENST00000263441.11:ENST00000395325.7:ENST00000483402.1:ENST00000371069.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	67	2	1.79873	1.915695	2.03266	0.0223888	0.0155853	0.116918	0.109411
chr7	22596439	22596539	3499335	0	-	0.33	(0.32,0.35]	chr7	326644	233	INTRON	INTRON	STEAP1B	ENSG00000105889.16	ENST00000439708.1:ENST00000442252.1:ENST00000650428.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	78	2	1.64353	1.9156499999999999	2.18777	0.0398512	0.00951422	0.143072	0.0863913
chr19	49086136	49086220	7088376	0	+	0.464286	(0.44,0.476]	chr19	709521	1	SS3_PROX	SS3_PROX:INTRON	SNRNP70	ENSG00000104852.15	ENST00000601065.5:ENST00000598984.5:ENST00000598441.6:ENST00000401730.5:ENST00000221448.9:ENST00000597936.5:ENST00000595231.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	57	2	1.68545	1.91559	2.14573	0.0322071	0.0238593	0.132543	0.129075
chr16	57182381	57182480	6493072	0	-	0.424242	(0.408,0.44]	chr16	627985	7	INTRON	INTRON	PSME3IP1	ENSG00000172775.17	ENST00000309137.13:ENST00000566077.5:ENST00000567439.5:ENST00000564108.5:ENST00000562324.5:ENST00000567044.5:ENST00000565458.5:ENST00000562406.5:ENST00000566584.5:ENST00000568671.5:ENST00000565760.5:ENST00000566481.5:ENST00000570184.1:ENST00000566681.1:ENST00000565353.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	85	2	1.82275	1.915585	2.00842	0.0123226	0.0108512	0.097243	0.0873034
chr10	42807710	42807810	4428284	0	+	0.34	(0.32,0.35]	chr10	408133	51	INTRON	INTRON	BMS1	ENSG00000165733.8	ENST00000374518.6	protein_coding	protein_coding	protein_coding	protein_coding	6	69	2	1.83315	1.9155	1.99785	0.0313348	0.0215554	0.144381	0.114686
chr7	101821277	101821377	3366401	0	+	0.35	(0.32,0.35]	chr7	315215	19	INTRON	INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000497815.5:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000607092.1:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000558469.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	69	2	1.83315	1.9155	1.99785	0.0313348	0.0215554	0.144381	0.114686
chr16	89591954	89592052	6421100	0	+	0.489796	(0.476,0.515]	chr16	616407	3	INTRON	INTRON	CPNE7	ENSG00000178773.15	ENST00000319518.13:ENST00000268720.9:ENST00000529800.5:ENST00000568977.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	94	2	1.83634	1.9154550000000001	1.99457	0.009924	0.00949158	0.0877296	0.0817766
chr14	31013146	31013246	5857741	0	-	0.47	(0.44,0.476]	chr14	556508	488	INTRON	INTRON	STRN3	ENSG00000196792.12	ENST00000355683.9:ENST00000357479.10:ENST00000555358.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	66	2	1.90381	1.915425	1.92704	0.0260626	0.0128054	0.122153	0.0990564
chr11	2947733	2947832	4891526	0	-	0.373737	(0.35,0.378]	chr11	458261	17	INTRON	INTRON	NAP1L4	ENSG00000205531.13	ENST00000620138.4:ENST00000380542.9:ENST00000469805.5:ENST00000469089.5:ENST00000526115.5:ENST00000492594.6:ENST00000526023.5:ENST00000492685.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	101	2	1.52225	1.9154200000000001	2.30859	0.0322499	0.00276702	0.132695	0.0486894
chr1	165835021	165835121	243823	0	+	0.49	(0.476,0.515]	chr1	29139	67	INTRON	INTRON	UCK2	ENSG00000143179.16	ENST00000367879.9:ENST00000642653.1	protein_coding	protein_coding	protein_coding	protein_coding	4	40	2	1.8388	1.9153850000000001	1.99197	0.0564473	0.039572	0.184423	0.143072
chr4	139102353	139102453	2246592	0	-	0.51	(0.476,0.515]	chr4	219566	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	ELF2	ENSG00000109381.21	ENST00000394235.6:ENST00000686138.1:ENST00000379550.5:ENST00000511184.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	40	2	1.8388	1.9153850000000001	1.99197	0.0564473	0.039572	0.184423	0.143072
chr5	109826036	109826135	2450390	0	+	0.494949	(0.476,0.515]	chr5	234678	18	INTRON	INTRON	MAN2A1	ENSG00000112893.10	ENST00000261483.5	protein_coding	protein_coding	protein_coding	protein_coding	4	40	2	1.8388	1.9153850000000001	1.99197	0.0564473	0.039572	0.184423	0.143072
chr7	36438504	36438603	3307511	0	+	0.484848	(0.476,0.515]	chr7	307191	98	INTRON	INTRON	ANLN	ENSG00000011426.11	ENST00000396068.6:ENST00000265748.7:ENST00000428612.5:ENST00000457743.1	protein_coding	protein_coding	protein_coding	protein_coding	4	40	2	1.8388	1.9153850000000001	1.99197	0.0564473	0.039572	0.184423	0.143072
chr7	23424697	23424796	3503208	0	-	0.383838	(0.378,0.408]	chr7	326906	55	INTRON	INTRON	IGF2BP3	ENSG00000136231.14	ENST00000258729.8:ENST00000421467.6:ENST00000468263.5:ENST00000479504.5:ENST00000466809.6:ENST00000491719.5:ENST00000465058.5:ENST00000469723.5:ENST00000476938.5:ENST00000468005.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	89	2	1.82032	1.91526	2.0102	0.01477	0.00940766	0.0984422	0.0861183
chr7	26208555	26208655	3292435	0	+	0.34	(0.32,0.35]	chr7	305853	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	CBX3	ENSG00000122565.19	ENST00000337620.8:ENST00000396386.7:ENST00000409747.5:ENST00000497498.1:ENST00000462165.2:ENST00000481057.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	57	2	1.69107	1.91526	2.13945	0.0517392	0.0254517	0.159306	0.133676
chr1	54718925	54719021	108223	0	+	0.322917	(0.32,0.35]	chr1	14114	9	INTRON	INTRON	TTC4	ENSG00000243725.7	ENST00000371281.4:ENST00000371284.9	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	78	2	1.76503	1.9151799999999999	2.06533	0.0240772	0.0174225	0.129859	0.10453
chr1	246324224	246324323	678880	0	-	0.545455	(0.515,0.57]	chr1	79743	19	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000453676.5:ENST00000462422.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	57	2	1.62814	1.9151349999999998	2.20213	0.035203	0.00853365	0.150193	0.0780043
chr7	102367669	102367768	3371111	0	+	0.535354	(0.515,0.57]	chr7	315430	12	INTRON	INTRON	PRKRIP1:ENSG00000239969	ENSG00000128563.13:ENSG00000239969.6	ENST00000477886.5:ENST00000469763.5:ENST00000482549.5:ENST00000496391.5:ENST00000484974.5:ENST00000492837.1:ENST00000482465.5	protein_coding	protein_coding	protein_coding:transcribed_unprocessed_pseudogene	protein_coding:processed_transcript	7	57	2	1.62814	1.9151349999999998	2.20213	0.035203	0.00853365	0.150193	0.0780043
chr12	8941940	8942040	5264576	0	-	0.37	(0.35,0.378]	chr12	501752	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	M6PR	ENSG00000003056.8	ENST00000000412.8:ENST00000541507.5:ENST00000539143.5:ENST00000536844.5:ENST00000544193.1:ENST00000543704.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	82	2	1.47599	1.9150049999999998	2.35402	0.0425671	0.00596483	0.162011	0.0674604
chr2	110664274	110664373	1206723	0	-	0.363636	(0.35,0.378]	chr2	128694	19	INTRON	INTRON	BUB1	ENSG00000169679.15	ENST00000302759.11:ENST00000535254.6:ENST00000409311.5:ENST00000466333.5:ENST00000666956.1:ENST00000465029.5:ENST00000477481.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	81	2	1.50939	1.915	2.32061	0.0423993	0.00545884	0.148082	0.0669938
chr8	67100568	67100667	3776998	0	+	0.414141	(0.408,0.44]	chr8	350299	15	EXON_MRNA	EXON_MRNA:INTRON	CSPP1	ENSG00000104218.16	ENST00000676113.1:ENST00000675306.2:ENST00000678156.1:ENST00000262210.11:ENST00000678017.1:ENST00000675869.1:ENST00000678542.1:ENST00000677619.1:ENST00000676605.1:ENST00000676471.1:ENST00000677256.1:ENST00000676847.1:ENST00000677009.1:ENST00000675820.1:ENST00000676317.1:ENST00000677592.1:ENST00000676573.1:ENST00000678318.1:ENST00000677473.1:ENST00000674993.1:ENST00000678553.1:ENST00000678204.1:ENST00000679226.1:ENST00000676882.1:ENST00000675955.1:ENST00000678728.1:ENST00000677430.1:ENST00000677455.1:ENST00000678616.1:ENST00000678362.1:ENST00000679112.1:ENST00000678645.1:ENST00000676567.1:ENST00000677845.1:ENST00000519163.6:ENST00000676858.1:ENST00000678747.1:ENST00000678821.1:ENST00000678744.1:ENST00000519668.1:ENST00000676697.1:ENST00000678216.1:ENST00000677855.1:ENST00000676695.1:ENST00000677836.1:ENST00000677070.1:ENST00000678444.1:ENST00000676534.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	67	2	1.3378	1.91499	2.49218	0.050805	0.00855168	0.175989	0.0780217
chr16	22497395	22497494	6322579	0	+	0.313131	(0.28,0.32]	chr16	605439	52	INTRON	INTRON	NPIPB5	ENSG00000243716.11	ENST00000415654.5:ENST00000415833.6:ENST00000546168.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	138	2	1.38319	1.91493	2.44667	0.0336194	0.00267187	0.146709	0.0464128
chr5	139311421	139311520	2499560	0	+	0.363636	(0.35,0.378]	chr5	238922	15	EXON_MRNA	EXON_MRNA:INTRON	MATR3	ENSG00000280987.4:ENSG00000015479.20	ENST00000509990.5:ENST00000506147.5:ENST00000512107.5:ENST00000361059.7:ENST00000394800.6:ENST00000502929.5:ENST00000504203.5:ENST00000509644.5:ENST00000512876.5:ENST00000513678.5:ENST00000513121.1:ENST00000504045.5:ENST00000504311.5:ENST00000502499.5:ENST00000510056.5:ENST00000511249.5:ENST00000394805.8:ENST00000507860.1:ENST00000509918.5:ENST00000503811.5:ENST00000511978.5:ENST00000618441.5:ENST00000514528.5:ENST00000504643.5:ENST00000515833.2:ENST00000514402.1:ENST00000505625.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	85	2	1.40722	1.9148549999999998	2.42249	0.0733776	0.0016343	0.190105	0.0372392
chr5	145762484	145762581	2745908	0	-	0.453608	(0.44,0.476]	chr5	258682	16	INTRON	INTRON	PRELID2	ENSG00000186314.12	ENST00000510259.5:ENST00000510594.1:ENST00000683046.1:ENST00000334744.8:ENST00000394450.6:ENST00000505416.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	48	2	1.55662	1.9148299999999998	2.27304	0.0688347	0.0158915	0.184298	0.109464
chr4	70937925	70938025	1970861	0	+	0.28	[0,0.28]	chr4	197571	350	INTRON	INTRON	MOB1B	ENSG00000173542.9	ENST00000502869.5:ENST00000509041.5:ENST00000309395.7:ENST00000396051.2:ENST00000511449.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	82	2	1.89998	1.9148100000000001	1.92964	0.0599553	0.0157154	0.169548	0.109464
chr8	125953264	125953361	3859398	0	+	0.278351	[0,0.28]	chr8	355338	3	EXON_LNCRNA	EXON_LNCRNA:INTRON	ENSG00000286122	ENSG00000286122.1	ENST00000651999.1:ENST00000652177.1	lncRNA	lncRNA	lncRNA	lncRNA	6	82	2	1.89998	1.9148100000000001	1.92964	0.0599553	0.0157154	0.169548	0.109464
chr5	139655759	139655859	2501273	0	+	0.59	(0.57,1]	chr5	239074	42	INTRON	INTRON	CXXC5	ENSG00000171604.12	ENST00000502295.1:ENST00000504944.1:ENST00000302517.8:ENST00000507139.5:ENST00000504844.1:ENST00000502336.5:ENST00000520967.1:ENST00000511048.1:ENST00000512816.1	protein_coding	protein_coding	protein_coding	protein_coding	9	44	2	1.72406	1.91479	2.10552	0.0261443	0.00330145	0.122221	0.0527031
chr5	134216288	134216388	2726594	0	-	0.55	(0.515,0.57]	chr5	256558	98	INTRON	INTRON	PPP2CA	ENSG00000113575.10	ENST00000481195.6:ENST00000522385.1:ENST00000523082.1:ENST00000231504.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	72	2	1.73535	1.9145699999999999	2.09379	0.0165373	0.00680216	0.110511	0.071184
chr4	2906709	2906807	1915672	0	+	0.367347	(0.35,0.378]	chr4	192322	11	INTRON	INTRON	ADD1	ENSG00000087274.19	ENST00000683351.1:ENST00000398125.5:ENST00000264758.11:ENST00000513328.6:ENST00000503455.6:ENST00000355842.7:ENST00000651918.1:ENST00000398129.5:ENST00000398123.6:ENST00000514940.5:ENST00000536078.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	74	2	1.6122	1.91453	2.21686	0.0616849	0.00414535	0.174021	0.0589266
chr17	81590786	81590885	6849129	0	-	0.525253	(0.515,0.57]	chr17	678168	13	INTRON	INTRON	NPLOC4	ENSG00000182446.14	ENST00000331134.11:ENST00000374747.9:ENST00000574897.5:ENST00000572351.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	12	97	2	1.47127	1.91452	2.35777	0.0333563	5.59179e-4	0.134145	0.0215535
chr5	113012630	113012725	2453755	0	+	0.4	(0.378,0.408]	chr5	235125	15	INTRON	INTRON	DCP2	ENSG00000172795.17	ENST00000515408.5:ENST00000513585.6:ENST00000389063.3:ENST00000674880.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	57	2	1.6165	1.91444	2.21238	0.0374185	0.0218124	0.155878	0.11491
chr5	71657540	71657637	2385562	0	+	0.536082	(0.515,0.57]	chr5	230208	8	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	MCCC2	ENSG00000131844.17	ENST00000682499.1:ENST00000682214.1:ENST00000682045.1:ENST00000683789.1:ENST00000681968.1:ENST00000682541.1:ENST00000682727.1:ENST00000683098.1:ENST00000683258.1:ENST00000684254.1:ENST00000683882.1:ENST00000684024.1:ENST00000683403.1:ENST00000682687.1:ENST00000682876.1:ENST00000683429.1:ENST00000340941.11:ENST00000683339.1:ENST00000683847.1:ENST00000684530.1:ENST00000681991.1:ENST00000682667.1:ENST00000684686.1:ENST00000684474.1:ENST00000682231.1:ENST00000682640.1:ENST00000682438.1:ENST00000684132.1:ENST00000684473.1:ENST00000682175.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	69	2	1.5060500000000001	1.91443	2.32281	0.0511812	0.00252428	0.176696	0.0446656
chr5	109338152	109338251	2701643	0	-	0.424242	(0.408,0.44]	chr5	254312	4	INTRON	INTRON	PJA2	ENSG00000198961.10	ENST00000361557.4:ENST00000361189.7	protein_coding	protein_coding	protein_coding	protein_coding	8	76	2	1.74108	1.914405	2.08773	0.0424099	0.00404379	0.148082	0.0578376
chr19	36221282	36221381	7057486	0	+	0.50505	(0.476,0.515]	chr19	704664	27	INTRON	INTRON	ZNF146	ENSG00000167635.12	ENST00000456324.5:ENST00000591063.5:ENST00000443387.3:ENST00000586094.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	68	2	1.34326	1.914385	2.48551	0.0529391	0.00756632	0.161923	0.0773151
chr3	119499042	119499142	1485385	0	+	0.36	(0.35,0.378]	chr3	155155	1	SS5_PROX	SS5_PROX:INTRON	TIMMDC1	ENSG00000113845.10	ENST00000494664.6:ENST00000493694.1:ENST00000264244.7:ENST00000486418.5:ENST00000492164.5:ENST00000466984.1:ENST00000463927.6:ENST00000498399.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	121	2	1.57676	1.91433	2.2519	0.0219008	0.0020199	0.114961	0.0416115
chr4	66640	66740	1905423	0	+	0.35	(0.32,0.35]	chr4	191003	61	INTRON	INTRON	ZNF595	ENSG00000272602.6	ENST00000608255.2:ENST00000609518.5:ENST00000509152.3:ENST00000610261.6	protein_coding	protein_coding	protein_coding	protein_coding	14	151	2	1.34281	1.914275	2.48574	0.0321748	0.00112443	0.145026	0.0306963
chr22	20572787	20572886	7480025	0	+	0.606061	(0.57,1]	chr22	763022	38	INTRON	INTRON	MED15	ENSG00000099917.17	ENST00000433831.5:ENST00000292733.11:ENST00000263205.11:ENST00000406969.5:ENST00000382974.6:ENST00000492381.5:ENST00000478831.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	13	61	2	1.41928	1.91426	2.40924	0.0257378	6.26777e-4	0.133676	0.0230192
chr16	136655	136754	6425748	0	-	0.40404	(0.378,0.408]	chr16	617388	57	INTRON	INTRON	NPRL3	ENSG00000103148.17	ENST00000611875.5:ENST00000622194.4:ENST00000621703.4:ENST00000399953.7:ENST00000457916.5:ENST00000483663.5:ENST00000422814.5:ENST00000468260.5:ENST00000456528.5:ENST00000419636.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	50	2	1.53052	1.91425	2.29798	0.0744544	0.0147606	0.192012	0.106702
chr7	128745964	128746063	3408442	0	+	0.272727	[0,0.28]	chr7	318422	62	INTRON	INTRON	CALU	ENSG00000128595.17	ENST00000535011.6:ENST00000542996.6:ENST00000249364.9:ENST00000449187.6:ENST00000479257.5	protein_coding	protein_coding	protein_coding	protein_coding	9	126	2	1.63606	1.914225	2.19239	0.0468781	0.00375415	0.151917	0.0562562
chr3	152327218	152327318	1535571	0	+	0.36	(0.35,0.378]	chr3	159996	249	INTRON	INTRON	MBNL1	ENSG00000152601.18	ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000495875.6:ENST00000324210.10:ENST00000493459.5:ENST00000459747.1:ENST00000460591.5:ENST00000545754.5:ENST00000357472.7:ENST00000324196.9:ENST00000498502.5:ENST00000463374.5:ENST00000485910.5:ENST00000465907.6:ENST00000492948.5:ENST00000485509.5:ENST00000464596.5	protein_coding	protein_coding	protein_coding	protein_coding	16	162	2	1.63564	1.91418	2.19272	0.0147142	8.33703e-4	0.0983813	0.0263691
chr12	121242333	121242429	5436129	0	-	0.416667	(0.408,0.44]	chr12	519723	11	INTRON	INTRON	CAMKK2	ENSG00000110931.19	ENST00000652382.1:ENST00000392474.6:ENST00000404169.8:ENST00000324774.9:ENST00000347034.6:ENST00000538733.5:ENST00000337174.7:ENST00000545538.5:ENST00000412367.6:ENST00000402834.8	protein_coding	protein_coding	protein_coding	protein_coding	4	38	2	1.53263	1.9141650000000001	2.2957	0.0733439	0.0516458	0.190051	0.176696
chr19	36012136	36012232	7172625	0	-	0.4375	(0.408,0.44]	chr19	724877	8	EXON_MRNA	EXON_MRNA:INTRON	ALKBH6	ENSG00000239382.11	ENST00000495116.6:ENST00000378875.8:ENST00000490986.5:ENST00000490483.5:ENST00000461668.5:ENST00000471323.1:ENST00000486389.5:ENST00000485128.5:ENST00000252984.11:ENST00000497999.1:ENST00000462793.5:ENST00000392183.7:ENST00000468004.5:ENST00000481257.5:ENST00000475223.5:ENST00000466196.5:ENST00000592353.1:ENST00000590666.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	38	2	1.53263	1.9141650000000001	2.2957	0.0733439	0.0516458	0.190051	0.176696
chr1	160304733	160304832	571912	0	-	0.343434	(0.32,0.35]	chr1	69300	51	INTRON	INTRON	COPA	ENSG00000122218.17	ENST00000241704.8:ENST00000696204.1:ENST00000696203.1:ENST00000696202.1:ENST00000649963.1:ENST00000696208.1:ENST00000696207.1:ENST00000696206.1:ENST00000649676.1:ENST00000368069.7:ENST00000647693.1:ENST00000649787.1:ENST00000650154.1:ENST00000647799.1:ENST00000648805.1:ENST00000647683.1:ENST00000649231.1:ENST00000648501.1:ENST00000696209.1:ENST00000696210.1:ENST00000696211.1:ENST00000647899.1:ENST00000648632.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	48	2	1.45026	1.9141000000000001	2.37794	0.0622478	0.0498601	0.194723	0.156383
chr1	227291105	227291205	651447	0	-	0.46	(0.44,0.476]	chr1	77110	260	INTRON	INTRON	CDC42BPA	ENSG00000143776.20	ENST00000366766.8:ENST00000366769.7:ENST00000334218.9:ENST00000366767.7:ENST00000366764.8:ENST00000478573.6:ENST00000682551.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	75	2	1.69823	1.914075	2.12992	0.0218548	0.010975	0.11491	0.092635
chr12	62369410	62369510	5150658	0	+	0.31	(0.28,0.32]	chr12	487365	136	INTRON	INTRON	USP15	ENSG00000135655.16	ENST00000353364.7:ENST00000280377.10:ENST00000547317.5:ENST00000549268.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	89	2	1.85772	1.91399	1.97026	0.0300199	0.0154633	0.142135	0.100909
chr2	158623001	158623099	898819	0	+	0.377551	(0.35,0.378]	chr2	99398	12	INTRON	INTRON	PKP4	ENSG00000144283.23	ENST00000389759.8:ENST00000426248.7:ENST00000389757.7:ENST00000452162.5:ENST00000421462.5:ENST00000481115.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	67	2	1.34146	1.913845	2.48623	0.0634598	0.00938784	0.19806000000000001	0.0817766
chr6	104790703	104790803	3171790	0	-	0.34	(0.32,0.35]	chr6	295866	34	INTRON	INTRON	HACE1	ENSG00000085382.12	ENST00000262903.9:ENST00000416605.6:ENST00000369125.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	99	2	1.5565	1.913735	2.27097	0.0383034	0.00347642	0.141858	0.0540643
chrX	74587455	74587555	7841673	0	-	0.25	[0,0.28]	chrX	799768	46	UTR3	UTR3:EXON_MRNA	RLIM	ENSG00000131263.13	ENST00000332687.11	protein_coding	protein_coding	protein_coding	protein_coding	10	136	2	1.775	1.9137	2.0524	0.0137801	0.0137657	0.10247	0.0949306
chr14	76354665	76354765	5797546	0	+	0.43	(0.408,0.44]	chr14	549230	434	INTRON	INTRON	ESRRB	ENSG00000119715.15	ENST00000512784.6	protein_coding	protein_coding	protein_coding	protein_coding	5	42	2	1.55035	1.913665	2.27698	0.0583528	0.0455214	0.167723	0.164236
chr4	126468441	126468541	2235393	0	-	0.42	(0.408,0.44]	chr4	219023	29	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	7	67	2	1.74108	1.9136449999999998	2.08621	0.0424099	0.00683843	0.148082	0.0748032
chr1	28738638	28738738	58360	0	+	0.6	(0.57,1]	chr1	7586	3	SS5_PROX	SS5_PROX:INTRON	YTHDF2	ENSG00000198492.16	ENST00000542507.5:ENST00000474884.5:ENST00000373812.8:ENST00000541996.5:ENST00000478283.5:ENST00000496288.5:ENST00000476976.1:ENST00000475796.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	30	2	1.83769	1.91361	1.98953	0.0297587	0.0182848	0.12908	0.115629
chr12	103930800	103930900	5208321	0	+	0.72	(0.57,1]	chr12	492898	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	HSP90B1	ENSG00000166598.16	ENST00000549334.5:ENST00000550595.2:ENST00000681861.1:ENST00000680899.1:ENST00000680391.1:ENST00000680653.1:ENST00000679779.1:ENST00000680281.1:ENST00000681949.1:ENST00000680989.1:ENST00000614327.2:ENST00000680762.1:ENST00000680663.1:ENST00000681172.1:ENST00000640977.2:ENST00000540297.7:ENST00000681941.1:ENST00000548622.1:ENST00000681910.1:ENST00000681704.1:ENST00000679377.1:ENST00000299767.10:ENST00000681174.1:ENST00000680370.1:ENST00000679538.1:ENST00000681698.1:ENST00000680242.1:ENST00000548462.5:ENST00000680316.1:ENST00000679861.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	38	2	1.50683	1.9135	2.32017	0.0378927	0.00488159	0.141283	0.0640618
chr11	78138145	78138205	4998330	0	-	0.433333	(0.408,0.44]	chr11	472393	1	INTRON	INTRON	ALG8	ENSG00000159063.14	ENST00000679559.1:ENST00000680398.1:ENST00000681221.1:ENST00000527099.2:ENST00000681489.1:ENST00000525783.6:ENST00000529139.6:ENST00000680761.1:ENST00000525870.6:ENST00000680866.1:ENST00000680223.1:ENST00000526737.6:ENST00000681575.1:ENST00000299626.10:ENST00000680467.1:ENST00000679497.1:ENST00000681351.1:ENST00000679697.1:ENST00000680580.1:ENST00000526849.6:ENST00000680256.1:ENST00000680797.1:ENST00000681723.1:ENST00000680142.1:ENST00000679685.1:ENST00000681384.1:ENST00000679874.1:ENST00000679444.1:ENST00000680459.1:ENST00000681699.1:ENST00000679986.1:ENST00000680063.1:ENST00000530608.6:ENST00000681765.1:ENST00000681225.1:ENST00000681417.1:ENST00000530910.6:ENST00000680329.1:ENST00000376156.7:ENST00000679648.1:ENST00000680101.1:ENST00000680829.1:ENST00000525761.3:ENST00000532440.6:ENST00000680996.1:ENST00000532306.6:ENST00000680399.1:ENST00000679539.1:ENST00000615266.5:ENST00000681957.1:ENST00000532552.2:ENST00000680643.1:ENST00000530454.6:ENST00000525755.6:ENST00000532050.5:ENST00000526928.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	40	2	1.74775	1.91347	2.07919	0.0735403	0.0291499	0.190238	0.14147
chr2	62207134	62207233	790111	0	+	0.424242	(0.408,0.44]	chr2	88695	104	INTRON	INTRON	B3GNT2	ENSG00000170340.11	ENST00000301998.5	protein_coding	protein_coding	protein_coding	protein_coding	4	40	2	1.74775	1.91347	2.07919	0.0735403	0.0291499	0.190238	0.14147
chr7	156868275	156868375	3687769	0	-	0.53	(0.515,0.57]	chr7	342096	310	INTRON	INTRON	LMBR1	ENSG00000105983.23	ENST00000353442.10:ENST00000415428.5:ENST00000454132.5:ENST00000434503.5:ENST00000430278.5:ENST00000434278.5:ENST00000444719.5:ENST00000461469.5:ENST00000414218.1:ENST00000434453.1:ENST00000498034.5:ENST00000433968.5:ENST00000485985.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	41	2	1.56681	1.913465	2.26012	0.064862	0.0160033	0.179394	0.109464
chr1	20754271	20754371	389528	0	-	0.3	(0.28,0.32]	chr1	46531	40	INTRON	INTRON	HP1BP3	ENSG00000127483.19	ENST00000438032.6:ENST00000312239.10:ENST00000375003.6:ENST00000419948.5	protein_coding	protein_coding	protein_coding	protein_coding	7	78	2	1.45717	1.9134	2.36963	0.0472947	0.0157022	0.16913	0.101453
chr7	156887970	156888070	3687966	0	-	0.37	(0.35,0.378]	chr7	342096	507	INTRON	INTRON	LMBR1	ENSG00000105983.23	ENST00000353442.10:ENST00000415428.5:ENST00000454132.5:ENST00000434503.5:ENST00000430278.5:ENST00000434278.5:ENST00000444719.5:ENST00000461469.5:ENST00000414218.1:ENST00000434453.1:ENST00000498034.5:ENST00000433968.5:ENST00000485985.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	12	118	2	1.5182	1.913395	2.30859	0.0226263	0.00276702	0.117557	0.0486894
chr8	23566813	23566909	3715479	0	+	0.510417	(0.476,0.515]	chr8	345233	1	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	SLC25A37	ENSG00000147454.14	ENST00000519973.6:ENST00000290075.10:ENST00000417331.6:ENST00000518881.5:ENST00000520654.1:ENST00000523930.1:ENST00000523883.5:ENST00000522164.5:ENST00000521637.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	71	573	2	1.42512	1.913385	2.40165	0.00345612	4.64689e-5	0.0539802	0.00591247
chr5	150027714	150027811	2518939	0	+	0.525773	(0.515,0.57]	chr5	240804	2	INTRON	INTRON	HMGXB3	ENSG00000113716.13	ENST00000613459.4:ENST00000503427.5:ENST00000502717.6:ENST00000514469.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	57	2	1.37301	1.91338	2.45375	0.0752392	0.00273605	0.193891	0.0483437
chr7	64929815	64929912	3321358	0	+	0.329897	(0.32,0.35]	chr7	308805	9	UTR3	UTR3:EXON_MRNA	ZNF273	ENSG00000198039.12	ENST00000476120.2:ENST00000395375.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	47	2	1.88468	1.9133499999999999	1.94202	0.0515071	0.0486128	0.176696	0.153946
chr7	102637324	102637424	3588886	0	-	0.42	(0.408,0.44]	chr7	335058	4	UTR3	UTR3:EXON_MRNA	UPK3BL1:ENSG00000267645	ENSG00000267368.1:ENSG00000267645.5	ENST00000340457.8:ENST00000476151.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	39	337	2	1.3463	1.9133149999999999	2.48033	0.0120936	3.3968e-5	0.0908187	0.0046443
chr8	108248116	108248215	4023272	0	-	0.40404	(0.378,0.408]	chr8	367690	48	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	EIF3E	ENSG00000104408.11	ENST00000678042.1:ENST00000678773.1:ENST00000677409.1:ENST00000676892.1:ENST00000523674.2:ENST00000677674.1:ENST00000220849.10:ENST00000678937.1:ENST00000677084.1:ENST00000676706.1:ENST00000518100.6:ENST00000677040.1:ENST00000676698.1:ENST00000522352.6:ENST00000521297.2:ENST00000519030.6:ENST00000519627.2:ENST00000518345.2:ENST00000522445.6:ENST00000678334.1:ENST00000678023.1:ENST00000678797.1:ENST00000677614.1:ENST00000676642.1:ENST00000677965.1:ENST00000678901.1:ENST00000678243.1:ENST00000676663.1:ENST00000679198.1:ENST00000678004.1:ENST00000678881.1:ENST00000677590.1:ENST00000677272.1:ENST00000677746.1:ENST00000677447.1:ENST00000676548.1:ENST00000676487.1:ENST00000521440.6:ENST00000518442.5:ENST00000522887.1:ENST00000518634.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	61	2	1.8374	1.9131399999999998	1.98888	0.0299228	0.0205239	0.142135	0.110999
chr11	74966716	74966814	4830284	0	+	0.346939	(0.32,0.35]	chr11	450684	4	INTRON	INTRON	SPCS2	ENSG00000118363.13	ENST00000530257.5:ENST00000526361.1:ENST00000532972.5:ENST00000263672.11:ENST00000528265.1:ENST00000527225.1:ENST00000526883.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	56	2	1.83315	1.91311	1.99307	0.04271	0.0313348	0.148082	0.144381
chr1	168038988	168039086	249528	0	+	0.27551	[0,0.28]	chr1	29626	1	INTRON	INTRON	DCAF6	ENSG00000143164.16	ENST00000432587.6:ENST00000367843.7:ENST00000367840.4:ENST00000312263.10	protein_coding	protein_coding	protein_coding	protein_coding	6	83	2	1.812	1.913055	2.01411	0.0729149	0.0117032	0.189235	0.0962115
chr2	131297313	131297413	866358	0	+	0.37	(0.35,0.378]	chr2	97309	3	SS5_PROX	SS5_PROX:INTRON	PLEKHB2:FAR2P4	ENSG00000115762.17:ENSG00000231431.7	ENST00000404460.5:ENST00000560285.5:ENST00000425399.1	protein_coding	protein_coding	protein_coding:transcribed_unprocessed_pseudogene	protein_coding:processed_transcript:transcribed_unprocessed_pseudogene	5	53	2	1.75561	1.91305	2.07049	0.0739399	0.0140397	0.190914	0.102801
chr2	144497607	144497707	1241582	0	-	0.33	(0.32,0.35]	chr2	131736	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ZEB2	ENSG00000169554.23	ENST00000636471.1:ENST00000627532.3:ENST00000638128.1:ENST00000637304.1:ENST00000636179.1:ENST00000419938.5:ENST00000409487.7:ENST00000636732.2:ENST00000636026.2:ENST00000675069.1:ENST00000689298.1:ENST00000539609.7:ENST00000558170.6:ENST00000303660.8:ENST00000427902.5:ENST00000637267.2:ENST00000392861.6:ENST00000431672.4:ENST00000409211.5:ENST00000465308.5:ENST00000434448.5:ENST00000472146.5:ENST00000461784.3:ENST00000476394.5:ENST00000637591.2:ENST00000479735.1:ENST00000453352.5:ENST00000435831.5:ENST00000444559.5:ENST00000630572.2:ENST00000484313.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	13	143	2	1.8237	1.912905	2.00211	0.00946453	0.00445465	0.0817766	0.0610799
chr8	26319899	26319999	3716380	0	+	0.32	(0.28,0.32]	chr8	345372	149	INTRON	INTRON	PPP2R2A	ENSG00000221914.11	ENST00000380737.8:ENST00000520329.5:ENST00000518254.5:ENST00000524169.5:ENST00000518397.5:ENST00000522535.5:ENST00000665949.1:ENST00000522150.5:ENST00000523473.5:ENST00000521095.5:ENST00000660435.1:ENST00000523925.5:ENST00000524099.5:ENST00000315985.7:ENST00000519636.5:ENST00000522482.5:ENST00000521557.5:ENST00000519439.5:ENST00000521484.5:ENST00000523964.5:ENST00000667651.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	61	2	1.56481	1.912855	2.2609	0.0671429	0.0339805	0.183051	0.146815
chr5	141597334	141597434	2739972	0	-	0.35	(0.32,0.35]	chr5	258168	87	INTRON	INTRON	DIAPH1	ENSG00000131504.18	ENST00000647433.1:ENST00000389054.8:ENST00000518047.5:ENST00000523100.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	78	2	1.32932	1.9127100000000001	2.4961	0.0540385	0.00967886	0.181713	0.0828038
chr8	102301946	102302046	4011622	0	-	0.32	(0.28,0.32]	chr8	367131	14	INTRON	INTRON	UBR5	ENSG00000104517.13	ENST00000520539.6:ENST00000220959.8:ENST00000521922.5:ENST00000520898.5:ENST00000519365.1	protein_coding	protein_coding	protein_coding	protein_coding	6	70	2	1.64429	1.9126050000000001	2.18092	0.0365539	0.0271832	0.153932	0.123904
chr16	29596659	29596759	6471567	0	-	0.47	(0.44,0.476]	chr16	625301	18	INTRON	INTRON	ENSG00000288632	ENSG00000288632.1	ENST00000675579.1	lncRNA	lncRNA	lncRNA	lncRNA	12	110	2	1.59522	1.9125649999999998	2.22991	0.0189007	0.00208483	0.108861	0.0424672
chr5	32162757	32162857	2597400	0	-	0.61	(0.57,1]	chr5	246744	185	INTRON	INTRON	GOLPH3	ENSG00000113384.14	ENST00000265070.7:ENST00000503610.5:ENST00000512668.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	11	53	2	1.7127	1.912555	2.11241	0.0180739	0.00190628	0.107124	0.0403772
chr16	85592527	85592626	6415757	0	+	0.555556	(0.515,0.57]	chr16	615470	358	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	7	52	2	1.38719	1.91251	2.43783	0.0540435	0.00916404	0.181713	0.0812949
chr10	1090253	1090353	4379742	0	+	0.52	(0.515,0.57]	chr10	403948	35	INTRON	INTRON	WDR37	ENSG00000047056.17	ENST00000358220.5:ENST00000263150.9:ENST00000381329.5:ENST00000650072.1:ENST00000436154.1	protein_coding	protein_coding	protein_coding	protein_coding	4	34	2	1.79136	1.912485	2.03361	0.0638444	0.0325854	0.177811	0.145164
chr1	8812597	8812696	373737	0	-	0.414141	(0.408,0.44]	chr1	43563	57	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000656437.1:ENST00000659924.1	protein_coding	protein_coding	protein_coding	protein_coding	6	58	2	1.74108	1.91242	2.08376	0.0424099	0.0129886	0.148082	0.0991656
chr11	33161393	33161462	4940980	0	-	0.594203	(0.57,1]	chr11	462888	2	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	CSTF3	ENSG00000176102.13	ENST00000323959.9:ENST00000524827.6:ENST00000526480.1:ENST00000438862.6:ENST00000431742.2:ENST00000524556.1:ENST00000524775.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	39	2	1.83525	1.91239	1.98953	0.0182848	0.0110377	0.115629	0.0873897
chr6	43772601	43772696	2872084	0	+	0.526316	(0.515,0.57]	chr6	272350	1	INTRON	INTRON	VEGFA	ENSG00000112715.26	ENST00000476772.5:ENST00000672860.3:ENST00000372067.8:ENST00000425836.8:ENST00000372064.9:ENST00000482630.7:ENST00000372055.9:ENST00000413642.8:ENST00000324450.11:ENST00000417285.7:ENST00000372077.8:ENST00000519767.5:ENST00000520948.5:ENST00000518538.5:ENST00000523950.5:ENST00000523873.5:ENST00000518824.5:ENST00000457104.6:ENST00000518689.5:ENST00000523125.5:ENST00000512683.1:ENST00000230480.10	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	44	2	1.2997	1.9123700000000001	2.52504	0.0561321	0.029342	0.18407	0.128055
chr7	67279437	67279537	3541630	0	-	0.51	(0.476,0.515]	chr7	330372	47	INTRON	INTRON	PMS2P4	ENSG00000067601.9	ENST00000685171.1:ENST00000688358.1:ENST00000692496.1:ENST00000685583.1:ENST00000688710.1:ENST00000684859.1:ENST00000685318.1:ENST00000691713.1:ENST00000686389.1:ENST00000690253.1:ENST00000688815.1:ENST00000692171.1:ENST00000692360.1:ENST00000689281.1:ENST00000690241.1:ENST00000689629.1:ENST00000689043.1:ENST00000688809.1:ENST00000687432.1:ENST00000687680.1:ENST00000686900.1:ENST00000691782.1:ENST00000693356.1:ENST00000691384.1:ENST00000690440.1:ENST00000686719.1:ENST00000686561.1:ENST00000688238.1:ENST00000687826.1:ENST00000689908.1:ENST00000689385.1:ENST00000689855.1:ENST00000691806.1:ENST00000689028.1:ENST00000688599.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	5	48	2	1.69138	1.91221	2.13304	0.0481165	0.024866	0.153019	0.132101
chr19	19521028	19521128	7036451	0	+	0.39	(0.378,0.408]	chr19	701528	43	INTRON	INTRON	NDUFA13	ENSG00000186010.19	ENST00000502506.6:ENST00000507754.9:ENST00000503283.5:ENST00000428459.6:ENST00000511584.2:ENST00000511180.4:ENST00000606722.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	60	2	1.68393	1.9121099999999998	2.14029	0.0503034	0.0106742	0.156383	0.0917199
chr9	125302263	125302357	4198664	0	+	0.361702	(0.35,0.378]	chr9	383171	4	CDS	CDS:EXON_MRNA	GAPVD1	ENSG00000165219.23	ENST00000497580.5:ENST00000297933.11:ENST00000394084.5:ENST00000470056.5:ENST00000394105.6:ENST00000394083.6:ENST00000495955.5:ENST00000467750.5:ENST00000394104.6:ENST00000312123.13:ENST00000431329.5:ENST00000436712.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	88	2	1.25787	1.912105	2.56634	0.0708442	0.00190773	0.184617	0.0403772
chr16	18086093	18086193	6453494	0	-	0.59	(0.57,1]	chr16	621960	823	INTRON	INTRON	ENSG00000259929:ENSG00000260242	ENSG00000259929.5:ENSG00000260242.1	ENST00000567304.1:ENST00000563866.1	lncRNA	lncRNA	lncRNA	lncRNA	4	21	2	1.77365	1.911955	2.05026	0.0670385	0.0321326	0.183051	0.145026
chr16	85537073	85537173	6415201	0	+	0.58	(0.57,1]	chr16	615465	1778	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	4	21	2	1.77365	1.911955	2.05026	0.0670385	0.0321326	0.183051	0.145026
chr22	21422053	21422152	7481219	0	+	0.636364	(0.57,1]	chr22	763209	9	INTRON	INTRON	HIC2	ENSG00000169635.10	ENST00000407464.7:ENST00000407598.2	protein_coding	protein_coding	protein_coding	protein_coding	4	21	2	1.77365	1.911955	2.05026	0.0670385	0.0321326	0.183051	0.145026
chr22	23266552	23266649	7484073	0	+	0.494845	(0.476,0.515]	chr22	763569	17	INTRON	INTRON	BCR	ENSG00000186716.21	ENST00000359540.7:ENST00000305877.13:ENST00000427791.1	protein_coding	protein_coding	protein_coding	protein_coding	11	92	2	1.19725	1.91185	2.62645	0.0605672	0.00135678	0.171122	0.0339121
chr9	130879367	130879467	4215524	0	+	0.39	(0.378,0.408]	chr9	386472	4	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000318560.6	protein_coding	protein_coding	protein_coding	protein_coding	7	70	2	1.6165	1.91181	2.20712	0.0374185	0.00978751	0.155878	0.0835427
chr4	55420245	55420344	1960842	0	+	0.434343	(0.408,0.44]	chr4	196577	17	INTRON	INTRON	TMEM165	ENSG00000134851.13	ENST00000381334.10:ENST00000506198.5:ENST00000508404.5:ENST00000514904.5:ENST00000508561.5:ENST00000608091.1:ENST00000509575.1:ENST00000506103.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	15	113	2	1.176	1.9117950000000001	2.64759	0.0400828	0.0016061	0.161534	0.0364977
chr12	132089001	132089097	5250231	0	+	0.572917	(0.57,1]	chr12	499289	6	INTRON	INTRON	EP400P1	ENSG00000185684.16	ENST00000407361.8:ENST00000446190.5:ENST00000690966.1:ENST00000689047.1:ENST00000454179.7:ENST00000689533.1:ENST00000688036.1:ENST00000688136.1:ENST00000488030.5:ENST00000389560.6:ENST00000689403.1:ENST00000443539.6:ENST00000392352.5:ENST00000539205.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	4	21	2	1.9042	1.911785	1.91937	0.0476976	0.0468438	0.167716	0.153019
chr15	49170375	49170475	6019109	0	+	0.63	(0.57,1]	chr15	573669	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	GALK2	ENSG00000156958.15	ENST00000559883.5:ENST00000559963.5:ENST00000327171.7:ENST00000560654.5:ENST00000558775.5:ENST00000561074.5:ENST00000559040.1:ENST00000396509.6:ENST00000558956.5:ENST00000559208.5:ENST00000560031.6:ENST00000559095.1:ENST00000560119.5:ENST00000558145.5:ENST00000544523.5:ENST00000560138.5:ENST00000559423.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	21	2	1.9042	1.911785	1.91937	0.0476976	0.0468438	0.167716	0.153019
chr21	43751919	43752017	7413497	0	+	0.571429	(0.57,1]	chr21	755576	10	INTRON	INTRON	PDXK	ENSG00000160209.19	ENST00000468090.5:ENST00000291565.9:ENST00000398085.7:ENST00000498040.5:ENST00000481512.5:ENST00000490666.5:ENST00000467908.1:ENST00000343528.10:ENST00000398078.7:ENST00000468392.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	21	2	1.9042	1.911785	1.91937	0.0476976	0.0468438	0.167716	0.153019
chr1	246908655	246908755	681726	0	-	0.44	(0.408,0.44]	chr1	80023	5	INTRON	INTRON	AHCTF1	ENSG00000153207.16	ENST00000648844.2:ENST00000326225.3:ENST00000366508.5	protein_coding	protein_coding	protein_coding	protein_coding	4	40	2	1.81572	1.9117000000000002	2.00768	0.0626779	0.035843	0.175915	0.152216
chr3	128768727	128768827	1497636	0	+	0.41	(0.408,0.44]	chr3	156330	420	INTRON	INTRON	RAB7A	ENSG00000075785.14	ENST00000676214.1:ENST00000675864.1:ENST00000675712.1:ENST00000676425.1:ENST00000490093.6:ENST00000675342.1:ENST00000265062.8:ENST00000674748.1:ENST00000493186.6:ENST00000482525.5:ENST00000491681.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	40	2	1.81572	1.9117000000000002	2.00768	0.0626779	0.035843	0.175915	0.152216
chr1	154972207	154972305	559827	0	-	0.428571	(0.408,0.44]	chr1	66658	16	INTRON	INTRON	SHC1	ENSG00000160691.19	ENST00000368450.5:ENST00000368453.8:ENST00000412170.5:ENST00000366442.2	protein_coding	protein_coding	protein_coding	protein_coding	6	58	2	1.69172	1.911645	2.13157	0.0486032	0.0109031	0.153946	0.0923273
chr22	21822939	21823039	7560939	0	-	0.44	(0.408,0.44]	chr22	773388	147	INTRON	INTRON	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	6	58	2	1.78881	1.9115600000000001	2.03431	0.0370259	0.0154896	0.139194	0.108998
chr6	154772688	154772788	3002210	0	+	0.35	(0.32,0.35]	chr6	280737	303	INTRON	INTRON	SCAF8	ENSG00000213079.10	ENST00000367186.7:ENST00000417268.3:ENST00000461219.5:ENST00000367178.8:ENST00000464628.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	72	2	1.6868	1.9115000000000002	2.1362	0.0291083	0.0217601	0.128029	0.123836
chr5	43297508	43297587	2614270	0	-	0.468354	(0.44,0.476]	chr5	248511	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HMGCS1	ENSG00000112972.15	ENST00000325110.11:ENST00000433297.2	protein_coding	protein_coding	protein_coding	protein_coding	7	63	2	1.85696	1.9114900000000001	1.96602	0.0426807	0.0107727	0.148082	0.0920575
chr10	45973804	45973900	4430394	0	+	0.447917	(0.44,0.476]	chr10	408462	7	INTRON	INTRON	TIMM23	ENSG00000265354.4	ENST00000580018.4	protein_coding	protein_coding	protein_coding	protein_coding	7	69	2	1.43625	1.911305	2.38636	0.063142	0.0047296	0.197183	0.0600445
chr16	9111892	9111992	6285575	0	+	0.3	(0.28,0.32]	chr16	601929	88	UTR3	UTR3:EXON_MRNA:INTRON	C16orf72	ENSG00000182831.12	ENST00000327827.12:ENST00000574285.2	protein_coding	protein_coding	protein_coding	protein_coding	12	138	2	1.9023	1.911305	1.92031	0.0182101	0.00433766	0.107833	0.0601014
chr12	9423392	9423483	5264897	0	-	0.318681	(0.28,0.32]	chr12	501848	4	INTRON	INTRON	DDX12P	ENSG00000214826.5	ENST00000432996.2	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	8	95	2	1.53516	1.9111500000000001	2.28714	0.0431104	0.00696126	0.148082	0.0754576
chr9	130590983	130591083	4213206	0	+	0.28	[0,0.28]	chr9	386268	90	INTRON	INTRON	FUBP3	ENSG00000107164.16	ENST00000319725.10:ENST00000650723.1:ENST00000465949.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	70	2	1.88025	1.9111449999999999	1.94204	0.0544139	0.029906	0.164972	0.142135
chr17	81685828	81685925	6691013	0	+	0.402062	(0.378,0.408]	chr17	654014	2	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HGS	ENSG00000185359.14	ENST00000677161.1:ENST00000678096.1:ENST00000679191.1:ENST00000676546.1:ENST00000678387.1:ENST00000679170.1:ENST00000677109.1:ENST00000677484.1:ENST00000678115.1:ENST00000677243.1:ENST00000677044.1:ENST00000679336.1:ENST00000678196.1:ENST00000676462.1:ENST00000576393.5:ENST00000576498.5:ENST00000678105.1:ENST00000676478.1:ENST00000329138.9:ENST00000676721.1:ENST00000677209.1:ENST00000677225.1:ENST00000678866.1:ENST00000679275.1:ENST00000678541.1:ENST00000676729.1:ENST00000572392.2:ENST00000677012.1:ENST00000577012.1:ENST00000571518.6:ENST00000678846.1:ENST00000678658.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	13	122	2	1.7981	1.911085	2.02407	0.00680892	0.00563164	0.0711884	0.0678837
chr14	67911451	67911551	5766290	0	+	0.41	(0.408,0.44]	chr14	547062	22	INTRON	INTRON	RAD51B	ENSG00000182185.19	ENST00000487861.5:ENST00000471583.6:ENST00000479335.5:ENST00000487270.5:ENST00000488612.5:ENST00000553595.5:ENST00000497460.5:ENST00000492236.5:ENST00000554244.5:ENST00000478014.5:ENST00000469165.6:ENST00000460526.5:ENST00000468382.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	55	2	1.6546400000000001	1.9110500000000001	2.16746	0.0329965	0.024436	0.145298	0.12011
chr1	32680347	32680436	66139	0	+	0.303371	(0.28,0.32]	chr1	8472	7	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	RBBP4	ENSG00000162521.19	ENST00000373493.10:ENST00000373485.5:ENST00000460669.5:ENST00000482190.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	104	1203	2	1.90219	1.911045	1.9199	9.36804e-4	3.3767e-4	0.0280776	0.0163366
chr12	122518093	122518174	5442161	0	-	0.469136	(0.44,0.476]	chr12	520574	3	INTRON	INTRON	RSRC2	ENSG00000111011.18	ENST00000331738.12:ENST00000532695.5:ENST00000433877.6:ENST00000527173.6:ENST00000525335.6:ENST00000344591.8:ENST00000528263.1:ENST00000527399.3:ENST00000527796.6:ENST00000526560.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	55	2	1.7965	1.91104	2.02558	0.0363567	0.0205549	0.138959	0.122348
chr1	162583139	162583237	238537	0	+	0.459184	(0.44,0.476]	chr1	28722	13	INTRON	INTRON	UAP1	ENSG00000117143.14	ENST00000367925.6:ENST00000367926.9:ENST00000474728.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	66	2	1.47433	1.9110399999999998	2.34775	0.0595438	0.00466011	0.16883600000000001	0.0629753
chr3	177193763	177193863	1872412	0	-	0.38	(0.378,0.408]	chr3	187439	3	SS5_PROX	SS5_PROX:INTRON	TBL1XR1	ENSG00000177565.18	ENST00000457928.7:ENST00000430069.5:ENST00000673974.1:ENST00000352800.10:ENST00000422442.6:ENST00000428970.5:ENST00000424913.5:ENST00000437738.5:ENST00000431421.5:ENST00000635794.1:ENST00000630796.2:ENST00000450267.5:ENST00000630833.2:ENST00000431674.5:ENST00000422066.5:ENST00000443315.5:ENST00000627825.2:ENST00000427349.5:ENST00000413084.5:ENST00000637137.1:ENST00000491623.2:ENST00000637544.1:ENST00000636187.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	50	2	1.8252	1.91099	1.99678	0.0619563	0.0177959	0.174514	0.113452
chr3	172046612	172046712	1559613	0	+	0.38	(0.378,0.408]	chr3	161523	56	INTRON	INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000421757.5:ENST00000469491.5:ENST00000336824.8:ENST00000423424.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	43	2	1.51223	1.91092	2.30961	0.055088	0.051139	0.176696	0.165463
chr16	70250494	70250591	6510069	0	-	0.474227	(0.44,0.476]	chr16	630495	39	UTR3	UTR3:EXON_MRNA	EXOSC6	ENSG00000223496.3	ENST00000435634.3	protein_coding	protein_coding	protein_coding	protein_coding	13	122	2	1.68502	1.9109150000000001	2.13681	0.0115528	0.00268027	0.0962115	0.0464781
chr1	212051109	212051209	307495	0	+	0.38	(0.378,0.408]	chr1	35478	33	INTRON	INTRON	DTL	ENSG00000143476.18	ENST00000542077.5:ENST00000366991.5:ENST00000475419.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	50	2	1.58349	1.9108999999999998	2.23831	0.0653091	0.0179575	0.180158	0.114265
chr17	42274895	42274991	6772214	0	-	0.416667	(0.408,0.44]	chr17	666978	1	EXON_LNCRNA	EXON_LNCRNA:INTRON	STAT5B:ENSG00000278829	ENSG00000173757.10:ENSG00000278829.1	ENST00000293328.8:ENST00000468312.1:ENST00000415845.1:ENST00000617211.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	13	122	2	1.83848	1.910835	1.98319	0.00739981	0.0042785	0.0743092	0.0598356
chr9	83969380	83969406	4274217	0	-	0.192308	[0,0.28]	chr9	393115	1	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	HNRNPK	ENSG00000165119.21	ENST00000376281.8:ENST00000376263.8:ENST00000351839.7:ENST00000360384.9:ENST00000493362.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	27	350	2	1.39636	1.910815	2.42527	0.0154697	8.02146e-4	0.108969	0.0262199
chr12	120553829	120553929	5235962	0	+	0.31	(0.28,0.32]	chr12	496872	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	RNF10	ENSG00000022840.17	ENST00000325954.9:ENST00000542438.1:ENST00000538796.5:ENST00000413266.6:ENST00000551139.6:ENST00000536869.5:ENST00000543578.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	16	178	2	1.75413	1.91081	2.06749	0.00743065	0.0049544	0.0745754	0.0646039
chr16	7950349	7950449	6440011	0	-	0.36	(0.35,0.378]	chr16	620339	556	INTRON	INTRON	ENSG00000260289	ENSG00000260289.2	ENST00000670665.1:ENST00000654046.1:ENST00000567103.2	lncRNA	lncRNA	lncRNA	lncRNA	15	137	2	1.24352	1.91079	2.57806	0.0413265	7.61742e-4	0.145756	0.0253498
chr17	78781101	78781201	6845824	0	-	0.46	(0.44,0.476]	chr17	677345	443	INTRON	INTRON	CYTH1	ENSG00000108669.17	ENST00000589296.5:ENST00000361101.8:ENST00000446868.8:ENST00000591455.5:ENST00000591574.5:ENST00000592497.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	55	2	1.43625	1.91072	2.38519	0.063142	0.012193	0.197183	0.0910127
chr19	3460466	3460566	7000580	0	+	0.37	(0.35,0.378]	chr19	694231	26	INTRON	INTRON	NFIC	ENSG00000141905.19	ENST00000641145.1:ENST00000589123.5:ENST00000395111.7:ENST00000341919.7:ENST00000443272.3:ENST00000590282.5:ENST00000589537.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	63	2	1.70607	1.91069	2.11531	0.0482819	0.0119629	0.153283	0.0962115
chr7	152204228	152204324	3678937	0	-	0.447917	(0.44,0.476]	chr7	341517	7	UTR3	UTR3:EXON_MRNA:INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000683200.1:ENST00000682283.1:ENST00000473186.5:ENST00000679882.1:ENST00000680969.1:ENST00000681033.1:ENST00000682176.1:ENST00000679645.1:ENST00000683254.1:ENST00000684550.1:ENST00000489110.2:ENST00000681838.1:ENST00000683490.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	74	2	1.60033	1.91068	2.22103	0.030306	0.00776319	0.130104	0.0787356
chr1	235319417	235319517	663775	0	-	0.52	(0.515,0.57]	chr1	78552	583	INTRON	INTRON	ARID4B	ENSG00000054267.22	ENST00000349213.7:ENST00000366603.6:ENST00000264183.9:ENST00000421364.5:ENST00000491632.5:ENST00000418304.1:ENST00000466653.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	95	2	1.59202	1.910545	2.22907	0.0104228	0.00383939	0.0902296	0.0542786
chr16	87735733	87735833	6538367	0	-	0.59	(0.57,1]	chr16	633530	47	INTRON	INTRON	KLHDC4	ENSG00000104731.14	ENST00000567298.5:ENST00000270583.10:ENST00000347925.9:ENST00000353170.9:ENST00000316853.10:ENST00000566349.5:ENST00000562155.5:ENST00000622456.4:ENST00000562261.1:ENST00000566661.5:ENST00000567513.1:ENST00000564484.5:ENST00000565328.5:ENST00000569747.5:ENST00000564396.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	30	2	1.89351	1.9105349999999999	1.92756	0.0255126	0.0220439	0.133676	0.115395
chr11	85959560	85959647	5013713	0	-	0.482759	(0.476,0.515]	chr11	472899	1	INTRON	INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000530692.5:ENST00000526548.3:ENST00000630913.2:ENST00000529760.5:ENST00000528398.5:ENST00000532603.5:ENST00000356360.9:ENST00000529016.5:ENST00000526961.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	91	2	1.82399	1.91049	1.99699	0.0110277	0.00866166	0.0873897	0.0842392
chr1	12617826	12617922	379544	0	-	0.5	(0.476,0.515]	chr1	44555	6	UTR5	UTR5:EXON_MRNA	DHRS3	ENSG00000162496.9	ENST00000616661.5	protein_coding	protein_coding	protein_coding	protein_coding	27	247	2	1.86899	1.910485	1.95198	0.00153748	0.0012243	0.0362543	0.0320791
chr1	174889376	174889476	264449	0	+	0.52	(0.515,0.57]	chr1	30911	114	INTRON	INTRON	RABGAP1L	ENSG00000152061.24	ENST00000251507.8:ENST00000681986.1:ENST00000529145.6:ENST00000325589.9:ENST00000469553.6:ENST00000367687.5:ENST00000347255.6:ENST00000489615.5:ENST00000478442.5:ENST00000465412.5:ENST00000486220.5:ENST00000392064.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	34	2	1.7074	1.9102649999999999	2.11313	0.0779432	0.0256725	0.196685	0.133676
chr11	2981103	2981201	4891885	0	-	0.55102	(0.515,0.57]	chr11	458353	15	INTRON	INTRON	NAP1L4	ENSG00000205531.13	ENST00000620138.4:ENST00000380542.9:ENST00000526115.5:ENST00000532325.6:ENST00000448187.5:ENST00000399614.6:ENST00000430811.5:ENST00000529361.5:ENST00000528968.5:ENST00000530064.5:ENST00000526842.5:ENST00000531291.5:ENST00000455338.6:ENST00000534372.1	protein_coding	protein_coding	protein_coding	protein_coding	4	34	2	1.7074	1.9102649999999999	2.11313	0.0779432	0.0256725	0.196685	0.133676
chr17	76778252	76778352	6677953	0	+	0.47	(0.44,0.476]	chr17	652275	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA:INTRON	MFSD11	ENSG00000092931.12	ENST00000586622.5:ENST00000621483.4:ENST00000355954.7:ENST00000588460.6:ENST00000593181.5:ENST00000336509.8:ENST00000590514.5:ENST00000685175.1:ENST00000585692.5:ENST00000585865.1:ENST00000590070.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	48	2	1.83899	1.910225	1.98146	0.0589734	0.0186013	0.167915	0.117264
chr2	96632892	96632987	1181143	0	-	0.473684	(0.44,0.476]	chr2	126519	10	INTRON	INTRON	KANSL3	ENSG00000114982.19	ENST00000354204.10:ENST00000431828.6:ENST00000487070.5:ENST00000420155.5:ENST00000670907.1:ENST00000666923.1:ENST00000597150.5:ENST00000444759.5:ENST00000452268.5:ENST00000425656.5:ENST00000448075.1:ENST00000451819.5:ENST00000416138.1:ENST00000418735.1:ENST00000475820.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	48	2	1.83899	1.910225	1.98146	0.0589734	0.0186013	0.167915	0.117264
chr1	46132145	46132242	442114	0	-	0.525773	(0.515,0.57]	chr1	53503	3	UTR5	UTR5:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PIK3R3	ENSG00000117461.15	ENST00000372006.5:ENST00000262741.10:ENST00000420542.5:ENST00000423209.5:ENST00000493202.1:ENST00000425892.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	34	2	1.8707	1.910075	1.94945	0.0523213	0.0414068	0.161557	0.160182
chr11	76481330	76481430	4835868	0	+	0.56	(0.515,0.57]	chr11	451075	81	INTRON	INTRON	EMSY	ENSG00000158636.17	ENST00000427574.6:ENST00000695367.1:ENST00000334736.7:ENST00000524490.5:ENST00000533972.5:ENST00000525038.5:ENST00000524767.5:ENST00000525919.5:ENST00000533248.5:ENST00000529032.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	34	2	1.8707	1.910075	1.94945	0.0523213	0.0414068	0.161557	0.160182
chr21	34104083	34104182	7401400	0	+	0.292929	(0.28,0.32]	chr21	753974	69	UTR3	UTR3:EXON_MRNA:INTRON	MRPS6:SLC5A3	ENSG00000243927.6:ENSG00000198743.7	ENST00000488492.5:ENST00000477091.5:ENST00000399312.3:ENST00000381151.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	118	2	1.89468	1.9099149999999998	1.92515	0.019774	0.00673928	0.109608	0.0739405
chr10	116911190	116911288	4699547	0	-	0.357143	(0.35,0.378]	chr10	433622	41	INTRON	INTRON	SHTN1	ENSG00000187164.20	ENST00000355371.9:ENST00000615301.4:ENST00000260777.14:ENST00000497044.5:ENST00000392901.10:ENST00000392903.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	60	2	1.77736	1.9098000000000002	2.04224	0.0363073	0.0225073	0.138959	0.124921
chr17	41781269	41781368	6769283	0	-	0.484848	(0.476,0.515]	chr17	666305	80	INTRON	INTRON	JUP	ENSG00000173801.17	ENST00000310706.9:ENST00000393930.5:ENST00000393931.8:ENST00000449889.5:ENST00000437187.5:ENST00000424457.5:ENST00000591690.5:ENST00000437369.5:ENST00000589036.1:ENST00000465293.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	36	2	1.68092	1.90973	2.13854	0.0776563	0.0474026	0.196285	0.169265
chr7	119821558	119821658	3629556	0	-	0.38	(0.378,0.408]	chr7	337335	203	INTRON	INTRON	LINC02476	ENSG00000225546.6	ENST00000660268.1:ENST00000431071.5:ENST00000426413.2	lncRNA	lncRNA	lncRNA	lncRNA	8	79	2	1.56313	1.9095649999999997	2.256	0.0474151	0.00336115	0.153019	0.0532154
chr10	119575465	119575564	4705797	0	-	0.343434	(0.32,0.35]	chr10	434177	38	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TIAL1	ENSG00000151923.18	ENST00000369093.6:ENST00000436547.7:ENST00000463089.6:ENST00000489822.5:ENST00000497671.5:ENST00000470781.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	56	2	1.72898	1.909515	2.09005	0.0425433	0.0330483	0.161951	0.133816
chr2	61359261	61359360	1129428	0	-	0.393939	(0.378,0.408]	chr2	121448	82	INTRON	INTRON	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000453133.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	57	2	1.76	1.909485	2.05897	0.0339294	0.023484	0.134508	0.128531
chr16	85584435	85584535	6415676	0	+	0.44	(0.408,0.44]	chr16	615470	277	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	14	134	2	1.4727	1.9094600000000002	2.34622	0.0217118	0.00101807	0.123836	0.029231300000000002
chr4	48598173	48598271	2137781	0	-	0.306122	(0.28,0.32]	chr4	210918	18	INTRON	INTRON	FRYL	ENSG00000075539.15	ENST00000358350.9:ENST00000503238.6:ENST00000507711.5:ENST00000673760.1:ENST00000506685.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	51	2	1.90263	1.90937	1.91611	0.0539102	0.0503272	0.17488	0.164153
chr15	28251390	28251488	6123334	0	-	0.438776	(0.408,0.44]	chr15	583303	23	INTRON	INTRON	HERC2	ENSG00000128731.18	ENST00000261609.13	protein_coding	protein_coding	protein_coding	protein_coding	4	36	2	1.6306	1.909335	2.18807	0.0708044	0.0544158	0.184528	0.182272
chr5	146239629	146239729	2514482	0	+	0.43	(0.408,0.44]	chr5	240194	18	INTRON	INTRON	ENSG00000275740:RBM27	ENSG00000275740.1:ENSG00000091009.8	ENST00000506502.2:ENST00000265271.7	protein_coding	protein_coding	protein_coding	protein_coding	4	36	2	1.6306	1.909335	2.18807	0.0708044	0.0544158	0.184528	0.182272
chr6	7232307	7232407	2799620	0	+	0.36	(0.35,0.378]	chr6	263783	4	SS5_PROX	SS5_PROX:INTRON	RREB1	ENSG00000124782.21	ENST00000379933.7:ENST00000379938.7:ENST00000349384.10:ENST00000334984.10	protein_coding	protein_coding	protein_coding	protein_coding	6	63	2	1.6599	1.909335	2.15877	0.0545616	0.0102036	0.165292	0.089002
chr3	72435400	72435500	1745809	0	-	0.31	(0.28,0.32]	chr3	177368	549	INTRON	INTRON	RYBP	ENSG00000163602.12	ENST00000477973.5	protein_coding	protein_coding	protein_coding	protein_coding	6	71	2	1.90241	1.90926	1.91611	0.0539102	0.0157236	0.164153	0.109464
chr5	28834041	28834141	2330090	0	+	0.25	[0,0.28]	chr5	225135	235	INTRON	INTRON	LINC02109	ENSG00000259786.7	ENST00000658190.1	lncRNA	lncRNA	lncRNA	lncRNA	4	58	2	1.812	1.9092449999999999	2.00649	0.0729149	0.040391	0.189235	0.161534
chr8	31083198	31083298	3728436	0	+	0.19	[0,0.28]	chr8	346571	1	SS3_PROX	SS3_PROX:INTRON	WRN	ENSG00000165392.11	ENST00000650667.1:ENST00000298139.7:ENST00000651642.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	58	2	1.812	1.9092449999999999	2.00649	0.0729149	0.040391	0.189235	0.161534
chr5	34166380	34166479	2599746	0	-	0.363636	(0.35,0.378]	chr5	247028	18	EXON_LNCRNA	EXON_LNCRNA	GUSBP18	ENSG00000215158.9	ENST00000514048.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	6	63	2	1.7942	1.90922	2.02424	0.0378648	0.0164934	0.141212	0.110301
chr7	105335562	105335662	3603372	0	-	0.53	(0.515,0.57]	chr7	336161	286	INTRON	INTRON	SRPK2	ENSG00000135250.17	ENST00000393651.8:ENST00000482897.5:ENST00000460391.5:ENST00000462282.5:ENST00000465112.5:ENST00000482862.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	68	2	1.57405	1.9091900000000002	2.24433	0.0221119	0.00725078	0.123903	0.072984
chr1	30946278	30946376	411677	0	-	0.357143	(0.35,0.378]	chr1	49633	4	INTRON	INTRON	PUM1	ENSG00000134644.16	ENST00000426105.7:ENST00000373747.7:ENST00000257075.9:ENST00000424085.6:ENST00000525843.5:ENST00000440538.6:ENST00000498419.5:ENST00000373741.8:ENST00000373742.6:ENST00000529846.5:ENST00000525997.1:ENST00000527498.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	67	2	1.6756	1.9091200000000002	2.14264	0.0274795	0.0219737	0.123904	0.123836
chr18	13755645	13755745	6878277	0	+	0.36	(0.35,0.378]	chr18	681663	11	INTRON	INTRON	RNMT	ENSG00000101654.18	ENST00000543302.6:ENST00000588457.5:ENST00000383314.7:ENST00000592764.5:ENST00000589866.5:ENST00000262173.7:ENST00000593007.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	44	2	1.82887	1.9090799999999999	1.98929	0.0584878	0.0417909	0.189395	0.147075
chr19	29959466	29959565	7047726	0	+	0.353535	(0.35,0.378]	chr19	702663	10	INTRON	INTRON	URI1	ENSG00000105176.18	ENST00000360605.8:ENST00000570564.5:ENST00000574233.5:ENST00000392271.6:ENST00000574110.5:ENST00000574666.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	44	2	1.82887	1.9090799999999999	1.98929	0.0584878	0.0417909	0.189395	0.147075
chr3	185807659	185807759	1886175	0	-	0.36	(0.35,0.378]	chr3	188573	1090	INTRON	INTRON	IGF2BP2	ENSG00000073792.16	ENST00000382199.7:ENST00000346192.7:ENST00000457616.6:ENST00000421047.3:ENST00000461957.5:ENST00000493302.5:ENST00000466476.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	44	2	1.82887	1.9090799999999999	1.98929	0.0584878	0.0417909	0.189395	0.147075
chr3	52692462	52692553	1429258	0	+	0.472527	(0.44,0.476]	chr3	151008	2	SS3_PROX	SS3_PROX:INTRON	GNL3	ENSG00000163938.17	ENST00000394799.6:ENST00000418458.6:ENST00000496254.5:ENST00000484022.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	74	2	1.4962	1.90902	2.32184	0.0392301	0.00609071	0.161534	0.0676501
chr5	138568022	138568122	2732832	0	-	0.49	(0.476,0.515]	chr5	257472	3	SS3_PROX	SS3_PROX:INTRON	HSPA9	ENSG00000113013.16	ENST00000677693.1:ENST00000677064.1:ENST00000678300.1:ENST00000677425.1:ENST00000649578.2:ENST00000677988.1:ENST00000297185.9:ENST00000677527.1:ENST00000678794.1:ENST00000677553.1:ENST00000678384.1:ENST00000678051.1:ENST00000677066.1:ENST00000649692.2:ENST00000678551.1:ENST00000524109.2:ENST00000507115.6:ENST00000507097.5:ENST00000504902.6:ENST00000508003.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	61	2	1.65426	1.9090150000000001	2.16377	0.0243026	0.0231344	0.126939	0.12011
chr15	65783538	65783638	6209709	0	-	0.4	(0.378,0.408]	chr15	592617	163	INTRON	INTRON	DENND4A	ENSG00000174485.16	ENST00000443035.8:ENST00000431932.6:ENST00000564674.5:ENST00000568515.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	12	116	2	1.62294	1.9089650000000002	2.19499	0.0222846	0.00158524	0.116433	0.0367961
chr14	101808706	101808806	5818970	0	+	0.39	(0.378,0.408]	chr14	551836	55	INTRON	INTRON	PPP2R5C	ENSG00000078304.20	ENST00000694906.1:ENST00000422945.6:ENST00000554442.5:ENST00000556068.5:ENST00000328724.9:ENST00000554504.1:ENST00000553890.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	76	2	1.55777	1.90893	2.26009	0.0193744	0.0188651	0.119831	0.108861
chr1	179228340	179228440	593066	0	-	0.23	[0,0.28]	chr1	71074	854	INTRON	INTRON	ABL2	ENSG00000143322.21	ENST00000502732.6:ENST00000367623.8:ENST00000507173.5:ENST00000511413.5:ENST00000668691.1:ENST00000392043.4:ENST00000660584.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	97	2	1.8882	1.9089200000000002	1.92964	0.0349837	0.0157154	0.137515	0.109464
chr4	126607794	126607894	2236787	0	-	0.28	[0,0.28]	chr4	219023	1423	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	10	137	2	1.76426	1.9088699999999998	2.05348	0.0329986	0.00463217	0.133816	0.0627861
chr12	76048029	76048129	5369825	0	-	0.29	(0.28,0.32]	chr12	512241	116	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NAP1L1	ENSG00000187109.15	ENST00000618691.5:ENST00000552056.5:ENST00000393263.7:ENST00000431879.7:ENST00000552147.5:ENST00000547773.5:ENST00000552013.1:ENST00000544816.5:ENST00000542344.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	29	335	2	1.87696	1.90886	1.94076	0.0030583	0.00140504	0.0494118	0.0343914
chr5	44816156	44816249	2352074	0	+	0.27957	[0,0.28]	chr5	226954	2	SS3_PROX	SS3_PROX:INTRON	MRPS30	ENSG00000112996.11	ENST00000230914.4	protein_coding	processed_transcript	protein_coding	processed_transcript	8	112	2	1.8592	1.9087749999999999	1.95835	0.0250628	0.014237	0.12011	0.103751
chr14	30937124	30937223	5856976	0	-	0.454545	(0.44,0.476]	chr14	556481	1	INTRON	INTRON	STRN3	ENSG00000196792.12	ENST00000355683.9:ENST00000357479.10:ENST00000555358.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	61	2	1.62674	1.90876	2.19078	0.0253995	0.0226089	0.133676	0.117489
chr1	145613742	145613841	210039	0	+	0.454545	(0.44,0.476]	chr1	22938	11	INTRON	INTRON	GPR89A	ENSG00000117262.19	ENST00000313835.14:ENST00000460277.5:ENST00000532574.5:ENST00000528944.5:ENST00000466593.5:ENST00000534502.5:ENST00000524525.5:ENST00000462900.2:ENST00000527989.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	40	2	1.85146	1.90874	1.96602	0.0545846	0.0426807	0.182529	0.148082
chr16	16502817	16502917	6310890	0	+	0.46	(0.44,0.476]	chr16	604098	28	INTRON	INTRON	ENSG00000260126	ENSG00000260126.2	ENST00000567465.2	lncRNA	lncRNA	lncRNA	lncRNA	4	40	2	1.85146	1.90874	1.96602	0.0545846	0.0426807	0.182529	0.148082
chr17	75340995	75341095	6837151	0	-	0.47	(0.44,0.476]	chr17	675716	78	INTRON	INTRON	GRB2	ENSG00000177885.15	ENST00000316615.9:ENST00000316804.10:ENST00000392562.5:ENST00000392564.5:ENST00000392563.5:ENST00000648046.1:ENST00000578961.5:ENST00000582582.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	40	2	1.85146	1.90874	1.96602	0.0545846	0.0426807	0.182529	0.148082
chr18	9477063	9477158	6871149	0	+	0.463158	(0.44,0.476]	chr18	680707	2	UTR5	UTR5:EXON_MRNA:INTRON	RALBP1	ENSG00000017797.13	ENST00000019317.8:ENST00000585015.6:ENST00000383432.8:ENST00000609094.2:ENST00000458039.3:ENST00000577221.1	protein_coding	protein_coding	protein_coding	protein_coding	4	40	2	1.85146	1.90874	1.96602	0.0545846	0.0426807	0.182529	0.148082
chr3	39411294	39411382	1401834	0	+	0.454545	(0.44,0.476]	chr3	147224	2	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPSA	ENSG00000168028.14	ENST00000301821.11:ENST00000458478.5:ENST00000443003.2:ENST00000478027.2:ENST00000495394.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	40	2	1.85146	1.90874	1.96602	0.0545846	0.0426807	0.182529	0.148082
chr7	152353211	152353310	3680465	0	-	0.464646	(0.44,0.476]	chr7	341654	86	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000682301.1:ENST00000452749.2:ENST00000680867.1:ENST00000683800.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	40	2	1.85146	1.90874	1.96602	0.0545846	0.0426807	0.182529	0.148082
chr6	137197664	137197756	3235645	0	-	0.467391	(0.44,0.476]	chr6	300706	3	UTR3	UTR3:EXON_MRNA	IFNGR1	ENSG00000027697.16	ENST00000458076.6:ENST00000696695.1:ENST00000367739.9:ENST00000696694.1:ENST00000645045.1:ENST00000643119.1:ENST00000696693.1:ENST00000414770.6:ENST00000696696.1:ENST00000644894.1:ENST00000646898.1:ENST00000646036.1:ENST00000645753.1:ENST00000642390.1:ENST00000647124.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	84	2	1.76195	1.9087049999999999	2.05546	0.0252608	0.00467486	0.12011	0.0631417
chr7	119891903	119892003	3630260	0	-	0.3	(0.28,0.32]	chr7	337335	907	INTRON	INTRON	LINC02476	ENSG00000225546.6	ENST00000660268.1:ENST00000431071.5:ENST00000426413.2	lncRNA	lncRNA	lncRNA	lncRNA	11	131	2	1.82574	1.90863	1.99152	0.0174786	0.00509793	0.10482	0.0646039
chr8	37859313	37859412	3935535	0	-	0.535354	(0.515,0.57]	chr8	360548	8	UTR3	UTR3:EXON_MRNA	RAB11FIP1	ENSG00000156675.16	ENST00000330843.9:ENST00000287263.8	protein_coding	protein_coding	protein_coding	protein_coding	9	68	2	1.6151	1.908615	2.20213	0.0189412	0.00853365	0.118428	0.0780043
chr9	37357953	37358051	4120050	0	+	0.346939	(0.32,0.35]	chr9	375446	8	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000461038.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	120	2	1.662	1.908615	2.15523	0.0214	0.00338289	0.113959	0.0534907
chr21	37380010	37380110	7406354	0	+	0.23	[0,0.28]	chr21	754850	45	INTRON	INTRON	DYRK1A	ENSG00000157540.22	ENST00000646523.1:ENST00000647425.1:ENST00000647188.2:ENST00000647504.1:ENST00000644942.1:ENST00000338785.8:ENST00000643624.1:ENST00000643551.1:ENST00000426672.6:ENST00000398960.7	protein_coding	protein_coding	protein_coding	protein_coding	9	124	2	1.81251	1.9085750000000001	2.00464	0.0287393	0.00797197	0.127066	0.0798772
chr5	73505238	73505323	2389621	0	+	0.305882	(0.28,0.32]	chr5	230689	1	UTR3	UTR3:EXON_MRNA	BTF3	ENSG00000145741.17	ENST00000676862.1:ENST00000335895.12:ENST00000678135.1:ENST00000380591.8:ENST00000514360.5:ENST00000679077.1:ENST00000514505.7:ENST00000509708.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	18	201	2	1.68715	1.90853	2.12991	0.0059017	0.00418269	0.0693938	0.0571772
chr11	77610514	77610614	4994054	0	-	0.47	(0.44,0.476]	chr11	471882	247	INTRON	INTRON	CLNS1A	ENSG00000074201.9	ENST00000526761.5	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	6	51	2	1.42079	1.9084150000000002	2.39604	0.0526065	0.0404291	0.161534	0.160978
chr6	147341874	147341973	2990103	0	+	0.30303	(0.28,0.32]	chr6	280116	21	INTRON	INTRON	STXBP5	ENSG00000164506.15	ENST00000321680.11:ENST00000367481.7:ENST00000367480.7:ENST00000367475.6:ENST00000392291.2	protein_coding	protein_coding	protein_coding	protein_coding	12	144	2	1.8692	1.90841	1.94762	0.011348	0.0061378	0.0886611	0.0709719
chr17	49752041	49752141	6794035	0	-	0.41	(0.408,0.44]	chr17	670428	49	INTRON	INTRON	FAM117A	ENSG00000121104.8	ENST00000240364.7:ENST00000513602.5:ENST00000503855.5:ENST00000514018.5:ENST00000505159.5:ENST00000506156.1:ENST00000509347.5:ENST00000503720.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	87	2	1.65739	1.908385	2.15938	0.012928	0.011260300000000001	0.0990564	0.0884004
chr21	39300377	39300477	7465410	0	-	0.37	(0.35,0.378]	chr21	760568	14	INTRON	INTRON	BRWD1	ENSG00000185658.14	ENST00000333229.6:ENST00000342449.8:ENST00000380800.7:ENST00000341322.4:ENST00000470108.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	20	188	2	1.79937	1.908305	2.01724	0.00520179	0.00216251	0.0633615	0.0433863
chr6	166954108	166954206	3264297	0	-	0.469388	(0.44,0.476]	chr6	303043	17	EXON_MRNA	EXON_MRNA:INTRON	ENSG00000249141:RNASET2	ENSG00000249141.1:ENSG00000026297.17	ENST00000507747.1:ENST00000508775.6:ENST00000683770.1:ENST00000611959.2:ENST00000620173.5:ENST00000682774.1:ENST00000684236.1:ENST00000683968.1:ENST00000366855.10:ENST00000421787.5:ENST00000476238.6:ENST00000028008.9:ENST00000478180.6:ENST00000358165.7:ENST00000683158.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	73	2	1.74644	1.9083	2.07016	0.0165016	0.0151815	0.110334	0.0994339
chr1	29095157	29095256	60792	0	+	0.454545	(0.44,0.476]	chr1	7763	107	INTRON	INTRON	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000373798.5:ENST00000649674.1:ENST00000343067.9:ENST00000349460.9:ENST00000646871.1:ENST00000488277.1:ENST00000490308.2:ENST00000650132.1:ENST00000649992.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	85	2	1.34221	1.90829	2.47437	0.0656882	0.00117531	0.181162	0.0316592
chr1	1406164	1406257	359969	0	-	0.526882	(0.515,0.57]	chr1	41824	4	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MRPL20	ENSG00000242485.6	ENST00000344843.12:ENST00000487659.1:ENST00000493287.5:ENST00000492508.1:ENST00000482352.1:ENST00000477686.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	10	81	2	1.73535	1.90825	2.08115	0.0165373	0.00430805	0.110511	0.0578073
chr7	105028429	105028529	3374760	0	+	0.43	(0.408,0.44]	chr7	315854	135	INTRON	INTRON	KMT2E	ENSG00000005483.22	ENST00000622386.2:ENST00000257745.9:ENST00000334884.9:ENST00000311117.8:ENST00000478990.5:ENST00000480368.5:ENST00000495267.5:ENST00000476671.5:ENST00000667857.1:ENST00000474203.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	16	145	2	1.85567	1.908175	1.96068	0.0090746	0.0015599	0.080809	0.0365263
chr2	131278593	131278692	866167	0	+	0.40404	(0.378,0.408]	chr2	97278	135	INTRON	INTRON	PLEKHB2	ENSG00000115762.17	ENST00000404460.5	protein_coding	protein_coding	protein_coding	protein_coding	6	50	2	1.58985	1.9078750000000002	2.2259	0.0662381	0.0290335	0.181924	0.141186
chr5	37516690	37516790	2341770	0	+	0.33	(0.32,0.35]	chr5	226253	1	SS5_PROX	SS5_PROX:INTRON	WDR70	ENSG00000082068.9	ENST00000504564.1:ENST00000511906.5:ENST00000265107.9:ENST00000510699.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	11	116	2	1.64168	1.90779	2.1739	0.014976	0.00682831	0.107704	0.0713163
chr16	87744326	87744424	6538455	0	-	0.561224	(0.515,0.57]	chr16	633538	14	INTRON	INTRON	KLHDC4	ENSG00000104731.14	ENST00000567298.5:ENST00000270583.10:ENST00000347925.9:ENST00000353170.9:ENST00000316853.10:ENST00000562155.5:ENST00000622456.4:ENST00000562261.1:ENST00000566661.5:ENST00000564484.5:ENST00000565328.5:ENST00000569747.5:ENST00000564396.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	42	2	1.8661	1.907775	1.94945	0.0414068	0.0274846	0.161557	0.123904
chr19	47176769	47176868	7084343	0	+	0.444444	(0.44,0.476]	chr19	708798	65	INTRON	INTRON	SAE1	ENSG00000142230.13	ENST00000413379.7:ENST00000270225.12:ENST00000598840.5:ENST00000414294.6:ENST00000660039.1:ENST00000664120.1:ENST00000596995.1:ENST00000392776.3:ENST00000659110.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	56	2	1.60467	1.90773	2.21079	0.0411383	0.0194581	0.1451	0.119831
chr17	37321849	37321949	6762194	0	-	0.55	(0.515,0.57]	chr17	664944	222	INTRON	INTRON	ACACA	ENSG00000278540.5	ENST00000616317.5:ENST00000614428.4:ENST00000613146.4:ENST00000615229.4:ENST00000621960.1:ENST00000617548.1:ENST00000616352.4:ENST00000614789.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	83	2	1.1737	1.907705	2.64171	0.0527436	0.00130576	0.178673	0.0331539
chr7	105140914	105141013	3601407	0	-	0.414141	(0.408,0.44]	chr7	336081	75	INTRON	INTRON	SRPK2	ENSG00000135250.17	ENST00000393651.8:ENST00000357311.7:ENST00000466917.1:ENST00000485455.1:ENST00000477925.5:ENST00000489828.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	67	2	1.49971	1.90768	2.31565	0.0298505	0.0154718	0.142135	0.100909
chr17	15536180	15536280	6732192	0	-	0.38	(0.378,0.408]	chr17	660304	52	INTRON	INTRON	TVP23C-CDRT4:TVP23C	ENSG00000259024.6:ENSG00000175106.17	ENST00000522212.6:ENST00000557349.5:ENST00000481756.7:ENST00000518506.4:ENST00000225576.7:ENST00000581273.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	16	143	2	1.06198	1.907585	2.75319	0.0714265	1.28633e-4	0.186064	0.00977207
chr2	96889045	96889145	1182115	0	-	0.61	(0.57,1]	chr2	126720	102	INTRON	INTRON	FAM178B	ENSG00000168754.15	ENST00000393526.6:ENST00000490605.3:ENST00000470789.5:ENST00000494172.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	32	2	1.43111	1.9075100000000003	2.38391	0.0484405	0.0104374	0.153635	0.0902296
chr12	57385654	57385754	5338804	0	-	0.44	(0.408,0.44]	chr12	510710	443	INTRON	INTRON	R3HDM2	ENSG00000179912.21	ENST00000402412.6:ENST00000347140.7:ENST00000634871.1:ENST00000448732.1	protein_coding	protein_coding	protein_coding	protein_coding	8	74	2	1.50652	1.90745	2.30838	0.0410276	0.00547703	0.1451	0.0671198
chr1	52845271	52845371	104931	0	+	0.41	(0.408,0.44]	chr1	13720	19	INTRON	INTRON	ZYG11A	ENSG00000203995.10	ENST00000371532.5:ENST00000612017.4:ENST00000371528.2	protein_coding	protein_coding	protein_coding	protein_coding	7	68	2	1.55035	1.907375	2.2644	0.0455214	0.00768371	0.164236	0.0753803
chr21	44863314	44863413	7469020	0	-	0.59596	(0.57,1]	chr21	761242	15	INTRON	INTRON	PTTG1IP	ENSG00000183255.12	ENST00000397887.7:ENST00000445724.3:ENST00000330938.8:ENST00000474737.5:ENST00000494690.5:ENST00000480234.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	25	2	1.79063	1.90727	2.02391	0.0356001	0.0339274	0.15159	0.134508
chr15	63761330	63761428	6200174	0	-	0.438776	(0.408,0.44]	chr15	591421	26	INTRON	INTRON	HERC1	ENSG00000103657.14	ENST00000443617.7:ENST00000561400.1:ENST00000559886.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	67	2	1.6546400000000001	1.90701	2.15938	0.0329965	0.011260300000000001	0.145298	0.0884004
chr3	196046791	196046891	1897173	0	-	0.33	(0.32,0.35]	chr3	189884	192	INTRON	INTRON	TFRC	ENSG00000072274.13	ENST00000426789.5	protein_coding	protein_coding	protein_coding	protein_coding	9	83	2	1.32702	1.906975	2.48693	0.0450154	0.0338094	0.149888	0.146709
chr22	49656123	49656171	7602649	0	-	0.291667	(0.28,0.32]	chr22	778595	1	SS5_PROX	SS5_PROX:INTRON	MIR3667HG	ENSG00000188511.13	ENST00000414287.5:ENST00000416411.1:ENST00000689875.1:ENST00000400023.5:ENST00000405854.5	lncRNA	lncRNA	lncRNA	lncRNA	12	143	2	1.73843	1.9069699999999998	2.07551	0.0179591	0.003536	0.1067	0.0546236
chr11	63715164	63715262	4800252	0	+	0.387755	(0.378,0.408]	chr11	444946	8	INTRON	INTRON	RTN3	ENSG00000133318.14	ENST00000341307.6:ENST00000356000.7:ENST00000542238.5:ENST00000339997.8:ENST00000540798.5:ENST00000537981.5:ENST00000377819.10:ENST00000536011.5:ENST00000543123.1:ENST00000543552.5:ENST00000545432.5:ENST00000354497.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	49	2	1.50417	1.9068900000000002	2.30961	0.055088	0.0384675	0.165463	0.159169
chr19	15377114	15377214	7147691	0	-	0.52	(0.515,0.57]	chr19	722052	1	SS3_PROX	SS3_PROX:INTRON	AKAP8	ENSG00000105127.10	ENST00000269701.7:ENST00000680461.1:ENST00000681812.1:ENST00000680336.1:ENST00000680245.1:ENST00000681018.1:ENST00000598597.7:ENST00000599883.2:ENST00000537303.5:ENST00000595416.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	47	2	1.48539	1.9068749999999999	2.32836	0.0553982	0.0126662	0.165463	0.0982897
chr1	151696604	151696704	226589	0	+	0.42	(0.408,0.44]	chr1	25935	23	UTR3	UTR3:EXON_MRNA	SNX27	ENSG00000143376.14	ENST00000368843.8:ENST00000458013.7	protein_coding	protein_coding	protein_coding	protein_coding	11	99	2	1.71548	1.90683	2.09818	0.0101701	0.00772939	0.089002	0.0757122
chr5	65932801	65932901	2370906	0	+	0.52	(0.515,0.57]	chr5	228472	56	INTRON	INTRON	ERBIN	ENSG00000112851.15	ENST00000380943.6:ENST00000507490.1:ENST00000416865.6:ENST00000380935.5:ENST00000284037.10:ENST00000380938.6:ENST00000511297.5:ENST00000506030.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	56	2	1.79385	1.906815	2.01978	0.0201222	0.0165522	0.121243	0.102621
chr13	91353817	91353917	5516848	0	+	0.3	(0.28,0.32]	chr13	527586	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	MIR17HG	ENSG00000215417.13	ENST00000400282.6:ENST00000664987.1	lncRNA	lncRNA	lncRNA	lncRNA	27	318	2	1.90224	1.906765	1.91129	0.00313314	0.0016526	0.0499782	0.0375516
chr14	58269818	58269917	5731163	0	+	0.383838	(0.378,0.408]	chr14	544117	18	INTRON	INTRON	PSMA3	ENSG00000100567.13	ENST00000216455.9:ENST00000557087.5:ENST00000412908.6:ENST00000557508.5:ENST00000553677.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	83	2	1.60639	1.906755	2.20712	0.0205731	0.00978751	0.122348	0.0835427
chr7	119880712	119880812	3630148	0	-	0.21	[0,0.28]	chr7	337335	795	INTRON	INTRON	LINC02476	ENSG00000225546.6	ENST00000660268.1:ENST00000431071.5:ENST00000426413.2	lncRNA	lncRNA	lncRNA	lncRNA	9	105	2	1.27002	1.90672	2.54342	0.0594396	0.0105954	0.189982	0.0861859
chr8	97648283	97648383	3809100	0	+	0.28	[0,0.28]	chr8	352836	30	INTRON	INTRON	MTDH	ENSG00000147649.10	ENST00000336273.8:ENST00000519934.5:ENST00000522313.1	protein_coding	protein_coding	protein_coding	protein_coding	5	70	2	1.85666	1.906675	1.95669	0.0660997	0.0237518	0.181924	0.129075
chr7	119747113	119747213	3628809	0	-	0.37	(0.35,0.378]	chr7	337319	418	INTRON	INTRON	LINC02476	ENSG00000225546.6	ENST00000660268.1:ENST00000431071.5	lncRNA	lncRNA	lncRNA	lncRNA	11	112	2	1.81613	1.906625	1.99712	0.00932362	0.00798081	0.085606	0.0766064
chr17	8378684	8378776	6720363	0	-	0.423913	(0.408,0.44]	chr17	659438	6	INTRON	INTRON	RPL26	ENSG00000161970.15	ENST00000648839.1:ENST00000584164.6:ENST00000584906.6:ENST00000583011.6:ENST00000578069.1:ENST00000584441.5:ENST00000582485.5:ENST00000582556.5:ENST00000585176.1:ENST00000584343.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	40	2	1.88062	1.906525	1.93243	0.0534548	0.0441194	0.162935	0.162255
chr20	3973434	3973533	7308985	0	-	0.262626	[0,0.28]	chr20	744293	91	INTRON	INTRON	RNF24	ENSG00000101236.17	ENST00000336095.10:ENST00000358395.11:ENST00000432261.6:ENST00000545616.2	protein_coding	protein_coding	protein_coding	protein_coding	5	70	2	1.71402	1.9065050000000001	2.09899	0.047753	0.0371453	0.170327	0.139304
chr14	81220518	81220606	5935898	0	-	0.375	(0.35,0.378]	chr14	564170	1	UTR5	UTR5:EXON_MRNA:INTRON	GTF2A1	ENSG00000165417.12	ENST00000553612.6:ENST00000298173.7:ENST00000434192.2:ENST00000556268.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	22	219	2	1.52777	1.906485	2.2852	0.0133182	2.85046e-4	0.0945191	0.0150568
chr4	55415270	55415368	1960787	0	+	0.367347	(0.35,0.378]	chr4	196562	1	EXON_LNCRNA	EXON_LNCRNA:INTRON	TMEM165	ENSG00000134851.13	ENST00000381334.10:ENST00000506198.5:ENST00000508404.5:ENST00000511710.1:ENST00000514904.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	14	141	2	1.71907	1.906415	2.09376	0.0218101	0.00107551	0.11491	0.0300133
chr22	21667013	21667109	7482453	0	+	0.510417	(0.476,0.515]	chr22	763311	5	INTRON	INTRON	ENSG00000207751:PPIL2	ENSG00000207751.3:ENSG00000100023.20	ENST00000498589.1:ENST00000679795.1:ENST00000679540.1:ENST00000679580.1:ENST00000681286.1:ENST00000680061.1:ENST00000681338.1:ENST00000681956.1:ENST00000679827.1:ENST00000679534.1:ENST00000679479.1:ENST00000680393.1:ENST00000680463.1:ENST00000680426.1:ENST00000335025.12:ENST00000498109.2:ENST00000496819.2:ENST00000398831.8:ENST00000681394.1:ENST00000679477.1:ENST00000626352.2:ENST00000417788.5:ENST00000458567.5:ENST00000681791.1:ENST00000679692.1:ENST00000680962.1:ENST00000679857.1:ENST00000679586.1:ENST00000680094.1:ENST00000484439.5:ENST00000680434.1:ENST00000680109.1:ENST00000406385.1:ENST00000680022.1:ENST00000681137.1:ENST00000680860.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA:processed_transcript	5	50	2	1.8388	1.9064100000000002	1.97402	0.0564473	0.0206778	0.184423	0.110999
chr9	93506576	93506676	4158597	0	+	0.42	(0.408,0.44]	chr9	379151	73	INTRON	INTRON	FAM120A	ENSG00000048828.17	ENST00000277165.11:ENST00000375389.7:ENST00000446420.2	protein_coding	protein_coding	protein_coding	protein_coding	6	56	2	1.53812	1.90638	2.27464	0.0501609	0.0158016	0.156383	0.109464
chr11	3756100	3756199	4894748	0	-	0.292929	(0.28,0.32]	chr11	458876	23	INTRON	INTRON	NUP98	ENSG00000110713.17	ENST00000359171.8:ENST00000324932.12:ENST00000650171.1:ENST00000355260.7:ENST00000397004.8:ENST00000397007.8:ENST00000527104.5:ENST00000529379.1:ENST00000397013.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	61	2	1.86684	1.9063750000000002	1.94591	0.0605813	0.0228482	0.171122	0.125519
chr2	96890439	96890538	1182129	0	-	0.474747	(0.44,0.476]	chr2	126720	116	INTRON	INTRON	FAM178B	ENSG00000168754.15	ENST00000393526.6:ENST00000490605.3:ENST00000470789.5:ENST00000494172.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	39	356	2	1.79373	1.906205	2.01868	0.00111017	5.48758e-4	0.030536	0.0215907
chr16	29442817	29442916	6469959	0	-	0.50505	(0.476,0.515]	chr16	625044	25	INTRON	INTRON	SMG1P6	ENSG00000254634.4	ENST00000532337.1	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	9	84	2	1.4095	1.9062	2.4029	0.054012	0.0016811	0.16443	0.0381232
chr12	96323447	96323547	5394508	0	-	0.28	[0,0.28]	chr12	514444	1	SS5_PROX	SS5_PROX:INTRON	CDK17	ENSG00000059758.8	ENST00000261211.8:ENST00000543119.6:ENST00000542666.5:ENST00000551816.5:ENST00000552496.5:ENST00000548734.1	protein_coding	protein_coding	protein_coding	protein_coding	6	80	2	1.60593	1.9061750000000002	2.20642	0.0433625	0.0280845	0.162255	0.125065
chr16	8111922	8112022	6441628	0	-	0.21	[0,0.28]	chr16	620352	1	SS5_PROX	SS5_PROX:INTRON	ENSG00000260289	ENSG00000260289.2	ENST00000670665.1:ENST00000654046.1:ENST00000567103.2	lncRNA	lncRNA	lncRNA	lncRNA	6	80	2	1.60593	1.9061750000000002	2.20642	0.0433625	0.0280845	0.162255	0.125065
chr17	63799079	63799179	6661213	0	+	0.42	(0.408,0.44]	chr17	649966	2	SS3_PROX	SS3_PROX:INTRON	DDX42	ENSG00000198231.14	ENST00000578681.5:ENST00000583590.5:ENST00000389924.7:ENST00000359353.9:ENST00000578137.5:ENST00000584261.5:ENST00000577940.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	47	2	1.45162	1.9061750000000002	2.36073	0.0481658	0.0451203	0.163518	0.153019
chr3	142026283	142026383	1834210	0	-	0.36	(0.35,0.378]	chr3	184341	204	INTRON	INTRON	TFDP2	ENSG00000114126.18	ENST00000489671.6:ENST00000486111.5:ENST00000477292.5:ENST00000495310.5:ENST00000467072.5:ENST00000487734.5:ENST00000467667.5:ENST00000478006.5:ENST00000497579.5:ENST00000464782.5:ENST00000488107.6:ENST00000475734.5:ENST00000471095.5:ENST00000494358.5:ENST00000467634.1:ENST00000495095.6:ENST00000476617.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	73	2	1.6599	1.9060949999999999	2.15229	0.0545616	0.00545124	0.165292	0.0669407
chr10	94608801	94608893	4500275	0	+	0.380435	(0.378,0.408]	chr10	414345	4	INTRON	INTRON	ENSG00000244332:HELLS	ENSG00000244332.1:ENSG00000119969.15	ENST00000432120.1:ENST00000371327.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	6	54	2	1.44787	1.906075	2.36428	0.0496837	0.0441088	0.162255	0.156383
chr12	50411304	50411404	5136437	0	+	0.36	(0.35,0.378]	chr12	484352	81	INTRON	INTRON	LARP4	ENSG00000161813.23	ENST00000550522.5:ENST00000293618.12:ENST00000429001.7:ENST00000398473.7:ENST00000548174.5:ENST00000548697.5:ENST00000548993.5:ENST00000522085.5:ENST00000518444.5:ENST00000551886.5:ENST00000523389.5:ENST00000518561.5:ENST00000347328.9:ENST00000550260.1:ENST00000517559.5:ENST00000552445.1	protein_coding	protein_coding	protein_coding	protein_coding	6	50	2	1.34146	1.906055	2.47065	0.0634598	0.0386172	0.19806000000000001	0.142656
chr19	28517121	28517221	7166266	0	-	0.43	(0.408,0.44]	chr19	724189	489	INTRON	INTRON	ENSG00000283403:ENSG00000267243	ENSG00000283403.1:ENSG00000267243.6	ENST00000592347.5:ENST00000593065.5	lncRNA	lncRNA	lncRNA	lncRNA	15	139	2	1.83738	1.906005	1.97463	0.00459091	0.00412725	0.0623576	0.0566415
chr12	71611487	71611585	5363026	0	-	0.336735	(0.32,0.35]	chr12	511883	5	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ZFC3H1	ENSG00000133858.17	ENST00000378743.9:ENST00000552994.5:ENST00000551487.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	73	2	1.81892	1.9059949999999999	1.99307	0.04271	0.0134787	0.148082	0.101363
chr1	113075642	113075742	188118	0	+	0.37	(0.35,0.378]	chr1	20854	16	INTRON	INTRON	LRIG2	ENSG00000198799.12	ENST00000361127.6	protein_coding	protein_coding	protein_coding	protein_coding	7	72	2	1.53008	1.9059500000000003	2.28182	0.0530361	0.00637232	0.162198	0.0724821
chr2	19900929	19901029	1074689	0	-	0.39	(0.378,0.408]	chr2	114711	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	TTC32	ENSG00000183891.6	ENST00000333610.4:ENST00000402414.1:ENST00000431392.1	protein_coding	protein_coding	protein_coding	protein_coding	8	69	2	1.46085	1.9059400000000002	2.35103	0.0343503	0.014158	0.147468	0.0959618
chr16	85575843	85575943	6415590	0	+	0.3	(0.28,0.32]	chr16	615470	191	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	27	316	2	1.78337	1.905685	2.028	0.00543787	8.52498e-4	0.0645749	0.0264928
chr7	111283593	111283693	3621318	0	-	0.41	(0.408,0.44]	chr7	337093	3197	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	55	2	1.7519	1.905685	2.05947	0.0333232	0.0239555	0.134145	0.129259
chr12	68618248	68618348	5161278	0	+	0.51	(0.476,0.515]	chr12	488573	68	INTRON	INTRON	RAP1B	ENSG00000127314.18	ENST00000460800.5:ENST00000393436.9:ENST00000250559.14:ENST00000425247.6:ENST00000501412.2:ENST00000450214.6:ENST00000463493.5:ENST00000537460.5:ENST00000341355.9:ENST00000538283.5:ENST00000541167.5:ENST00000422358.6:ENST00000489473.6:ENST00000545270.5:ENST00000538980.5:ENST00000543393.5:ENST00000542018.5:ENST00000540209.5:ENST00000378985.7:ENST00000453560.6:ENST00000534899.5:ENST00000542145.5:ENST00000539091.5:ENST00000535492.5:ENST00000540781.5:ENST00000485252.6:ENST00000538877.5:ENST00000541386.5:ENST00000543697.5:ENST00000545720.6:ENST00000541216.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	12	109	2	1.87544	1.905675	1.93591	0.0113658	0.0038383	0.0886611	0.0562562
chr1	26258560	26258660	49735	0	+	0.46	(0.44,0.476]	chr1	6222	3	SS5_PROX	SS5_PROX:INTRON	CEP85	ENSG00000130695.16	ENST00000451429.8:ENST00000640292.2:ENST00000252992.8:ENST00000453146.1	protein_coding	protein_coding	protein_coding	protein_coding	7	66	2	1.70242	1.90567	2.10892	0.0282713	0.0132897	0.137721	0.0944742
chr16	8101022	8101122	6441519	0	-	0.48	(0.476,0.515]	chr16	620351	934	INTRON	INTRON	ENSG00000260289	ENSG00000260289.2	ENST00000670665.1:ENST00000654046.1:ENST00000567103.2	lncRNA	lncRNA	lncRNA	lncRNA	15	135	2	1.6395	1.905665	2.17183	0.0108092	0.00174985	0.0870809	0.0386524
chr16	16522410	16522510	6311086	0	+	0.37	(0.35,0.378]	chr16	604098	224	INTRON	INTRON	ENSG00000260126	ENSG00000260126.2	ENST00000567465.2	lncRNA	lncRNA	lncRNA	lncRNA	11	108	2	1.33473	1.90548	2.47623	0.0484067	0.0012627	0.153635	0.0329641
chr6	44247395	44247495	2872831	0	+	0.76	(0.57,1]	chr6	272576	2	SS5_PROX	SS5_PROX:INTRON	HSP90AB1	ENSG00000096384.20	ENST00000620073.4:ENST00000353801.7:ENST00000371646.10	protein_coding	protein_coding	protein_coding	protein_coding	28	128	2	1.8171	1.90545	1.9938	0.00235406	4.62175e-4	0.0445124	0.0198605
chr4	143996704	143996804	2251508	0	-	0.42	(0.408,0.44]	chr4	219945	4	SS3_PROX	SS3_PROX:INTRON	GYPB	ENSG00000250361.9	ENST00000502664.6:ENST00000506679.5:ENST00000429670.3:ENST00000507009.5:ENST00000513128.5:ENST00000505583.5:ENST00000506516.6:ENST00000513557.5:ENST00000513677.5:ENST00000511198.5:ENST00000504951.6:ENST00000510196.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	55	2	1.49523	1.90544	2.31565	0.0534846	0.0154718	0.180041	0.100909
chr7	100348136	100348234	3364460	0	+	0.530612	(0.515,0.57]	chr7	314647	18	INTRON	INTRON	STAG3L5P:STAG3L5P-PVRIG2P-PILRB	ENSG00000242294.6:ENSG00000272752.6	ENST00000473757.5:ENST00000470714.5:ENST00000310771.8:ENST00000483329.6:ENST00000444874.5:ENST00000488972.6:ENST00000493499.1	lncRNA	retained_intron	lncRNA:transcribed_unprocessed_pseudogene	retained_intron:lncRNA:processed_transcript	16	124	2	1.7384	1.905415	2.07243	0.006056	0.00172897	0.0676501	0.0384338
chr2	69368710	69368809	1147120	0	-	0.383838	(0.378,0.408]	chr2	122511	47	INTRON	INTRON	GFPT1	ENSG00000198380.13	ENST00000361060.5:ENST00000357308.9:ENST00000674507.1:ENST00000674438.1:ENST00000494201.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	15	128	2	1.50641	1.9053550000000001	2.3043	0.0121549	0.0035117	0.096419	0.0525467
chr2	54997392	54997492	1120873	0	-	0.34	(0.32,0.35]	chr2	120142	93	INTRON	INTRON	RTN4	ENSG00000115310.19	ENST00000394609.6:ENST00000404909.5:ENST00000394611.6:ENST00000317610.11:ENST00000357732.8:ENST00000337526.11:ENST00000357376.7:ENST00000405240.5:ENST00000438462.1	protein_coding	protein_coding	protein_coding	protein_coding	5	56	2	1.83416	1.9053499999999999	1.97654	0.0631198	0.0199113	0.176946	0.120668
chr2	62045664	62045764	788980	0	+	0.34	(0.32,0.35]	chr2	88680	443	INTRON	INTRON	COMMD1	ENSG00000173163.11	ENST00000472729.1:ENST00000311832.6:ENST00000427417.1:ENST00000458337.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	56	2	1.83416	1.9053499999999999	1.97654	0.0631198	0.0199113	0.176946	0.120668
chr1	155662119	155662218	563041	0	-	0.40404	(0.378,0.408]	chr1	67145	3	INTRON	INTRON	YY1AP1	ENSG00000163374.20	ENST00000368339.9:ENST00000295566.8:ENST00000368330.6:ENST00000436865.5:ENST00000359205.9:ENST00000407221.5:ENST00000404643.5:ENST00000361140.8:ENST00000361831.9:ENST00000347088.9:ENST00000354691.9:ENST00000368340.9:ENST00000311573.9:ENST00000442834.6:ENST00000355499.9:ENST00000405763.7:ENST00000488784.5:ENST00000493625.5:ENST00000477470.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	50	2	1.63458	1.9053299999999997	2.17608	0.0573057	0.0218783	0.167723	0.123836
chr1	211808276	211808376	631183	0	-	0.44	(0.408,0.44]	chr1	74654	147	INTRON	INTRON	LPGAT1	ENSG00000123684.13	ENST00000366997.9:ENST00000366996.1	protein_coding	protein_coding	protein_coding	protein_coding	5	48	2	1.88062	1.9053200000000001	1.93002	0.0534548	0.022095	0.162935	0.123903
chr2	159733365	159733465	899695	0	+	0.42	(0.408,0.44]	chr2	99528	38	INTRON	INTRON	MARCHF7	ENSG00000136536.15	ENST00000539065.5:ENST00000259050.8:ENST00000409175.6:ENST00000421037.1:ENST00000473749.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	48	2	1.88062	1.9053200000000001	1.93002	0.0534548	0.022095	0.162935	0.123903
chr11	62598082	62598141	4959855	0	-	0.474576	(0.44,0.476]	chr11	466368	2	CDS	CDS:UTR5:EXON_MRNA	MTA2	ENSG00000149480.7	ENST00000278823.7:ENST00000524902.5:ENST00000527204.5:ENST00000531261.1:ENST00000526844.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	48	2	1.66462	1.9051749999999998	2.14573	0.0520247	0.0238593	0.159508	0.129075
chr10	69140036	69140136	4444709	0	+	0.36	(0.35,0.378]	chr10	410023	66	INTRON	INTRON	VPS26A	ENSG00000122958.15	ENST00000373382.5:ENST00000395098.5:ENST00000489656.5:ENST00000263559.11:ENST00000497564.5:ENST00000490696.5:ENST00000467852.1:ENST00000489794.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	52	2	1.87586	1.90509	1.93432	0.0481438	0.0268864	0.153019	0.135275
chr16	89809823	89809919	6544754	0	-	0.427083	(0.408,0.44]	chr16	634602	10	INTRON	INTRON	FANCA	ENSG00000187741.16	ENST00000561667.2:ENST00000389301.8:ENST00000568369.6:ENST00000564475.6:ENST00000696275.1:ENST00000696287.1:ENST00000696286.1:ENST00000696291.1:ENST00000696276.1:ENST00000567205.2:ENST00000567284.7:ENST00000696277.1:ENST00000696292.1:ENST00000563767.2:ENST00000567621.6:ENST00000696288.1:ENST00000696293.1:ENST00000566889.5:ENST00000389302.7:ENST00000696294.1:ENST00000696295.1:ENST00000563673.5:ENST00000543736.5:ENST00000534992.5:ENST00000565582.5:ENST00000696296.1:ENST00000563513.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	48	2	1.69566	1.905065	2.11447	0.0453922	0.0285207	0.164236	0.12666
chr2	187465388	187465485	1288619	0	-	0.484536	(0.476,0.515]	chr2	135559	13	UTR3	UTR3:EXON_MRNA	TFPI	ENSG00000003436.16	ENST00000233156.9:ENST00000392365.5	protein_coding	protein_coding	protein_coding	protein_coding	8	73	2	1.55865	1.9050150000000001	2.25138	0.034348	0.00692374	0.135807	0.0753208
chr1	226182590	226182690	647017	0	-	0.42	(0.408,0.44]	chr1	76667	162	INTRON	INTRON	ACBD3	ENSG00000182827.9	ENST00000366812.6	protein_coding	protein_coding	protein_coding	protein_coding	16	150	2	1.81418	1.9049800000000001	1.99578	0.00511669	0.00289494	0.064713	0.0477325
chr1	167543200	167543300	576934	0	-	0.47	(0.44,0.476]	chr1	69951	5	INTRON	INTRON	CREG1	ENSG00000143162.9	ENST00000466652.2:ENST00000370509.5	protein_coding	protein_coding	protein_coding	protein_coding	12	110	2	1.65568	1.90497	2.15426	0.0130261	0.00372059	0.099362	0.0535094
chr11	95794120	95794220	4853563	0	+	0.39	(0.378,0.408]	chr11	452677	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	CEP57	ENSG00000166037.11	ENST00000537677.5:ENST00000325486.9:ENST00000325542.10:ENST00000538095.1:ENST00000544522.5:ENST00000539855.5:ENST00000541365.5:ENST00000535497.1:ENST00000540830.5:ENST00000538658.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	87	2	1.88716	1.904925	1.92269	0.017192	0.00836891	0.104099	0.0822143
chr6	31755606	31755704	2843651	0	+	0.489796	(0.476,0.515]	chr6	267818	16	INTRON	INTRON	MSH5:MSH5-SAPCD1	ENSG00000204410.16:ENSG00000255152.8	ENST00000375755.8:ENST00000375750.9:ENST00000650702.1:ENST00000493662.6:ENST00000375703.7:ENST00000375740.7:ENST00000423982.6:ENST00000463144.5:ENST00000450148.5:ENST00000468602.5:ENST00000468136.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	48	436	2	1.71942	1.904915	2.09041	0.00126956	2.58362e-4	0.0330699	0.0148796
chr7	73480061	73480160	3554672	0	-	0.606061	(0.57,1]	chr7	330783	11	INTRON	INTRON	BAZ1B	ENSG00000009954.11	ENST00000339594.9:ENST00000404251.1	protein_coding	protein_coding	protein_coding	protein_coding	5	25	2	1.52865	1.90484	2.28103	0.0730445	0.0151554	0.189414	0.108535
chr12	51003695	51003794	5324554	0	-	0.393939	(0.378,0.408]	chr12	507702	27	INTRON	INTRON	SLC11A2	ENSG00000110911.17	ENST00000547688.7:ENST00000644495.1:ENST00000643884.1:ENST00000546636.5:ENST00000547198.5:ENST00000394904.9:ENST00000262052.9:ENST00000643123.1:ENST00000646740.1:ENST00000642227.1:ENST00000541174.6:ENST00000545993.7:ENST00000546743.5:ENST00000547510.5:ENST00000546488.5:ENST00000547579.5:ENST00000550714.5:ENST00000547732.5:ENST00000549110.5:ENST00000548193.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	21	200	2	1.2666	1.90481	2.54302	0.0339699	6.87518e-5	0.134665	0.00687464
chr1	51862418	51862518	455134	0	-	0.46	(0.44,0.476]	chr1	54629	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	NRDC	ENSG00000078618.23	ENST00000354831.11:ENST00000539524.5:ENST00000352171.12:ENST00000491410.1:ENST00000468722.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	80	2	1.38315	1.90479	2.42643	0.0472692	0.0033369	0.152795	0.0528877
chr1	213168572	213168671	311881	0	+	0.383838	(0.378,0.408]	chr1	35951	2	INTRON	INTRON	RPS6KC1	ENSG00000136643.12	ENST00000615329.4:ENST00000543354.5:ENST00000614059.4:ENST00000543470.5:ENST00000366960.8:ENST00000366959.4:ENST00000490299.5:ENST00000468069.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	79	2	1.89052	1.90479	1.91906	0.0153989	0.0148147	0.106702	0.100621
chr11	9138918	9139012	4907770	0	-	0.244681	[0,0.28]	chr11	459984	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	DENND5A	ENSG00000184014.9	ENST00000328194.8:ENST00000529977.5:ENST00000681203.1:ENST00000530780.2:ENST00000680358.1:ENST00000679999.1:ENST00000679458.1:ENST00000531747.2:ENST00000680470.1:ENST00000680599.1:ENST00000680554.1:ENST00000679745.1:ENST00000679926.1:ENST00000679773.1:ENST00000680252.1:ENST00000525784.6:ENST00000681425.1:ENST00000681158.1:ENST00000679460.1:ENST00000681371.1:ENST00000680791.1:ENST00000679568.1:ENST00000679446.1:ENST00000681639.1:ENST00000680294.1:ENST00000680742.1:ENST00000680885.1:ENST00000680576.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	136	2	1.56819	1.9047749999999999	2.24136	0.0352697	0.00497825	0.137535	0.0646039
chr4	139114729	139114829	2246716	0	-	0.54	(0.515,0.57]	chr4	219568	120	INTRON	INTRON	ELF2	ENSG00000109381.21	ENST00000394235.6:ENST00000686138.1:ENST00000379550.5:ENST00000511184.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	56	2	1.63907	1.9047299999999998	2.17039	0.0350277	0.00900252	0.137535	0.0851009
chr21	39299181	39299281	7465398	0	-	0.32	(0.28,0.32]	chr21	760568	2	INTRON	INTRON	BRWD1	ENSG00000185658.14	ENST00000333229.6:ENST00000342449.8:ENST00000380800.7:ENST00000341322.4:ENST00000470108.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	149	2	1.28228	1.90472	2.52716	0.0712835	3.90583e-4	0.185716	0.0177889
chr3	31617001	31617075	1392243	0	+	0.418919	(0.408,0.44]	chr3	145719	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	STT3B	ENSG00000163527.10	ENST00000453168.5:ENST00000295770.4:ENST00000423527.5:ENST00000462235.5:ENST00000436236.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	56	2	1.88062	1.904665	1.92871	0.0534548	0.0127189	0.162935	0.0986242
chr9	37165631	37165731	4118111	0	+	0.3	(0.28,0.32]	chr9	375384	55	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000322831.6:ENST00000461038.5:ENST00000488607.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	141	2	1.44292	1.904615	2.36631	0.0385855	0.00142417	0.142656	0.0347039
chr3	9806411	9806510	1361065	0	+	0.454545	(0.44,0.476]	chr3	143127	3	UTR3	UTR3:EXON_MRNA:INTRON	ARPC4:ARPC4-TTLL3	ENSG00000241553.13:ENSG00000250151.9	ENST00000498623.6:ENST00000424442.5:ENST00000418163.5:ENST00000397261.8:ENST00000417500.5:ENST00000440787.5:ENST00000397256.5:ENST00000433034.1:ENST00000453882.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	79	2	1.60176	1.90445	2.20714	0.0389597	0.00493236	0.160861	0.061186
chr10	50335199	50335299	4617790	0	-	0.48	(0.476,0.515]	chr10	425400	75	INTRON	INTRON	SGMS1	ENSG00000198964.14	ENST00000429490.5:ENST00000361781.7:ENST00000602619.1:ENST00000361543.3:ENST00000626236.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	100	2	1.34709	1.9044349999999999	2.46178	0.0408438	0.00159317	0.161534	0.0364566
chr2	190926709	190926805	959955	0	+	0.375	(0.35,0.378]	chr2	104222	18	INTRON	INTRON	GLS	ENSG00000115419.13	ENST00000320717.8:ENST00000338435.8:ENST00000417154.5:ENST00000461965.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	60	2	1.81955	1.90442	1.98929	0.0417909	0.0194679	0.147075	0.11986
chr7	123737518	123737618	3632546	0	-	0.48	(0.476,0.515]	chr7	337581	279	INTRON	INTRON	WASL	ENSG00000106299.8	ENST00000223023.5	protein_coding	protein_coding	protein_coding	protein_coding	23	212	2	1.58404	1.90442	2.2248	0.0116686	1.88862e-4	0.0891208	0.0119565
chr15	50363725	50363824	6022128	0	+	0.383838	(0.378,0.408]	chr15	573922	89	EXON_LNCRNA	EXON_LNCRNA:INTRON	GABPB1-AS1	ENSG00000244879.9	ENST00000668321.1:ENST00000499624.3:ENST00000648591.1:ENST00000558593.1	lncRNA	lncRNA	lncRNA	lncRNA	6	57	2	1.80483	1.904405	2.00398	0.0393906	0.0201276	0.143072	0.121243
chr15	101962530	101962627	6117478	0	+	0.381443	(0.378,0.408]	chr15	582288	5	INTRON	INTRON	WASH3P	ENSG00000185596.16	ENST00000559884.5:ENST00000558686.5:ENST00000354296.9:ENST00000559163.6	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	6	57	2	1.80483	1.904405	2.00398	0.0393906	0.0201276	0.143072	0.121243
chr19	5619632	5619730	7124332	0	-	0.489796	(0.476,0.515]	chr19	717040	28	INTRON	INTRON	SAFB2	ENSG00000130254.12	ENST00000252542.9:ENST00000591120.1:ENST00000590262.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	37	2	1.52615	1.9043949999999998	2.28264	0.0739267	0.0534132	0.190914	0.179876
chr7	5219823	5219922	3272267	0	+	0.474747	(0.44,0.476]	chr7	304127	9	INTRON	INTRON	WIPI2	ENSG00000157954.15	ENST00000401525.7:ENST00000288828.9:ENST00000404704.7:ENST00000466014.5:ENST00000382384.6:ENST00000484262.1:ENST00000465102.5:ENST00000480238.5:ENST00000488359.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	75	2	1.76195	1.9043449999999997	2.04674	0.0252608	0.00803423	0.12011	0.0803474
chr5	39054219	39054319	2605446	0	-	0.41	(0.408,0.44]	chr5	247896	327	INTRON	INTRON	RICTOR	ENSG00000164327.13	ENST00000357387.8:ENST00000511516.5:ENST00000296782.9:ENST00000510711.5:ENST00000513566.1:ENST00000514735.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	66	2	1.84301	1.904175	1.96534	0.0216499	0.0174311	0.11491	0.112689
chr11	5505350	5505425	4898276	0	-	0.426667	(0.408,0.44]	chr11	459198	1	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	HBG2:ENSG00000239920:HBE1:OR51B5	ENSG00000196565.15:ENSG00000239920.2:ENSG00000213931.7:ENSG00000167355.8	ENST00000380252.6:ENST00000380259.7:ENST00000292896.3:ENST00000380237.5:ENST00000420726.6:ENST00000420465.6:ENST00000415970.6:ENST00000418729.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:nonsense_mediated_decay:processed_transcript	18	162	2	1.62652	1.9041350000000001	2.18175	0.00694581	0.00158235	0.0754576	0.0362856
chr2	107711908	107712008	1205668	0	-	0.25	[0,0.28]	chr2	128526	82	INTRON	INTRON	LINC01885:ENSG00000286769	ENSG00000237880.2:ENSG00000286769.1	ENST00000654481.1:ENST00000669817.1	lncRNA	lncRNA	lncRNA	lncRNA	8	111	2	1.71434	1.90412	2.0939	0.0379383	0.00875794	0.141416	0.0846118
chr16	69697941	69698040	6381353	0	+	0.313131	(0.28,0.32]	chr16	613255	17	UTR3	UTR3:EXON_MRNA	NFAT5	ENSG00000102908.22	ENST00000426654.6:ENST00000349945.7:ENST00000354436.6:ENST00000627621.3:ENST00000650987.1:ENST00000393742.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	141	2	1.84751	1.90407	1.96063	0.0162455	0.00430327	0.101453	0.0599409
chr7	158639991	158640089	3688110	0	-	0.255102	[0,0.28]	chr7	342109	3	UTR3	UTR3:EXON_MRNA:INTRON	NCAPG2	ENSG00000146918.20	ENST00000356309.8:ENST00000432615.5:ENST00000409423.5:ENST00000441982.5:ENST00000467785.5:ENST00000409339.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	90	2	1.70895	1.9039700000000002	2.09899	0.0371453	0.0229749	0.139304	0.126178
chr6	42082272	42082372	2865002	0	+	0.3	(0.28,0.32]	chr6	271004	26	UTR3	UTR3:EXON_MRNA:INTRON	TAF8	ENSG00000137413.17	ENST00000372982.8:ENST00000456846.6:ENST00000372977.8:ENST00000688562.1:ENST00000687266.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	73	2	1.67134	1.903925	2.13651	0.0387947	0.0265696	0.143072	0.134088
chr7	150331524	150331624	3447004	0	+	0.44	(0.408,0.44]	chr7	321727	30	EXON_LNCRNA	EXON_LNCRNA:INTRON	ZBED6CL:LRRC61	ENSG00000188707.7:ENSG00000127399.15	ENST00000343855.6:ENST00000323078.7:ENST00000493307.1:ENST00000359623.9	protein_coding	protein_coding	protein_coding:transcribed_unitary_pseudogene	protein_coding:processed_transcript	21	195	2	1.75746	1.90391	2.05036	0.00369564	0.00144653	0.0561162	0.0343186
chr9	132979241	132979341	4218947	0	+	0.4	(0.378,0.408]	chr9	387082	4	SS5_PROX	SS5_PROX:INTRON	GFI1B	ENSG00000165702.15	ENST00000339463.7:ENST00000636137.1:ENST00000372122.4:ENST00000372123.5	protein_coding	protein_coding	protein_coding	protein_coding	7	63	2	1.54765	1.90387	2.26009	0.0334147	0.0188651	0.146709	0.108861
chr20	4001762	4001862	7309270	0	-	0.39	(0.378,0.408]	chr20	744300	270	INTRON	INTRON	RNF24	ENSG00000101236.17	ENST00000336095.10:ENST00000358395.11:ENST00000545616.2	protein_coding	protein_coding	protein_coding	protein_coding	6	61	2	1.78011	1.9038650000000001	2.02762	0.0356367	0.0181059	0.151629	0.107247
chr5	139314082	139314181	2499587	0	+	0.434343	(0.408,0.44]	chr5	238922	42	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	MATR3	ENSG00000280987.4:ENSG00000015479.20	ENST00000509990.5:ENST00000506147.5:ENST00000512107.5:ENST00000361059.7:ENST00000394800.6:ENST00000502929.5:ENST00000504203.5:ENST00000509644.5:ENST00000512876.5:ENST00000513678.5:ENST00000513121.1:ENST00000504045.5:ENST00000504311.5:ENST00000502499.5:ENST00000510056.5:ENST00000511249.5:ENST00000394805.8:ENST00000507860.1:ENST00000509918.5:ENST00000503811.5:ENST00000511978.5:ENST00000618441.5:ENST00000514528.5:ENST00000504643.5:ENST00000515833.2:ENST00000514402.1:ENST00000505625.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	74	2	1.87977	1.903835	1.9279	0.0282738	0.00807087	0.125825	0.0806514
chr21	46281948	46282045	7471391	0	-	0.494845	(0.476,0.515]	chr21	761699	10	INTRON	INTRON	MCM3AP	ENSG00000160294.11	ENST00000397708.1:ENST00000291688.6	protein_coding	protein_coding	protein_coding	protein_coding	5	48	2	1.7425	1.903705	2.06491	0.0417334	0.0304733	0.147007	0.143385
chr22	19492239	19492338	7476959	0	+	0.393939	(0.378,0.408]	chr22	762407	79	INTRON	INTRON	CDC45	ENSG00000093009.11	ENST00000407835.6:ENST00000437685.6:ENST00000483431.5:ENST00000438587.6:ENST00000672837.1:ENST00000263201.7:ENST00000404724.7:ENST00000487669.5:ENST00000428937.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	93	2	1.71374	1.903685	2.09363	0.0274158	0.00513434	0.136498	0.062965
chr5	119134889	119134988	2460416	0	+	0.454545	(0.44,0.476]	chr5	235656	1	INTRON	INTRON	DMXL1	ENSG00000172869.15	ENST00000539542.6:ENST00000311085.8:ENST00000512281.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	55	2	1.84134	1.90368	1.96602	0.0426807	0.0175428	0.148082	0.11319
chr8	92872521	92872621	3990831	0	-	0.34	(0.32,0.35]	chr8	365358	861	INTRON	INTRON	FLJ46284	ENSG00000248858.7	ENST00000504861.2	lncRNA	lncRNA	lncRNA	lncRNA	8	90	2	1.60297	1.903675	2.20438	0.0647328	0.00271026	0.179192	0.0480766
chr3	183732933	183733032	1580646	0	+	0.535354	(0.515,0.57]	chr3	163056	37	INTRON	INTRON	YEATS2	ENSG00000163872.16	ENST00000305135.10	protein_coding	protein_coding	protein_coding	protein_coding	4	31	2	1.67758	1.903645	2.12971	0.0757903	0.0471728	0.194427	0.168737
chr5	134222461	134222561	2726656	0	-	0.31	(0.28,0.32]	chr5	256558	160	INTRON	INTRON	PPP2CA	ENSG00000113575.10	ENST00000481195.6:ENST00000522385.1:ENST00000523082.1:ENST00000231504.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	70	2	1.79739	1.90364	2.00989	0.0427801	0.0224995	0.148082	0.124921
chr12	112153333	112153423	5229781	0	+	0.555556	(0.515,0.57]	chr12	495826	7	UTR3	UTR3:EXON_MRNA	TRAFD1	ENSG00000135148.12	ENST00000257604.9:ENST00000412615.7	protein_coding	protein_coding	protein_coding	protein_coding	5	41	2	1.69407	1.9036	2.11313	0.0459452	0.0256725	0.149888	0.133676
chr9	130800853	130800953	4214733	0	+	0.28	[0,0.28]	chr9	386427	860	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000393293.4	protein_coding	protein_coding	protein_coding	protein_coding	17	223	2	1.44534	1.90355	2.36176	0.028184	0.0011793	0.125502	0.031662
chr20	32389527	32389627	7256138	0	+	0.46	(0.44,0.476]	chr20	737076	171	INTRON	INTRON	ASXL1	ENSG00000171456.21	ENST00000651418.1:ENST00000375687.10:ENST00000613218.4:ENST00000644587.1:ENST00000620121.4:ENST00000646985.1:ENST00000643168.1:ENST00000306058.9:ENST00000645688.1:ENST00000470145.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	55	2	1.47433	1.9035250000000001	2.33272	0.0595438	0.0129984	0.16883600000000001	0.0991656
chr1	154964368	154964468	559733	0	-	0.4	(0.378,0.408]	chr1	66608	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	SHC1	ENSG00000160691.19	ENST00000368450.5:ENST00000368453.8:ENST00000368449.8:ENST00000448116.7:ENST00000368445.9:ENST00000490667.1:ENST00000444664.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	103	2	1.88781	1.903435	1.91906	0.0153989	0.00486383	0.100621	0.0640618
chr9	133373838	133373938	4370426	0	-	0.43	(0.408,0.44]	chr9	402198	59	INTRON	INTRON	SURF4	ENSG00000148248.14	ENST00000545297.5:ENST00000613129.4:ENST00000618229.4:ENST00000371989.8:ENST00000485435.6:ENST00000467910.5:ENST00000371991.3:ENST00000371982.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	106	2	1.35953	1.9034149999999999	2.4473	0.0367385	0.0013419	0.138959	0.0336974
chr17	82467380	82467478	6692352	0	+	0.357143	(0.35,0.378]	chr17	654561	26	INTRON	INTRON	NARF	ENSG00000141562.19	ENST00000579198.5:ENST00000390006.8:ENST00000583181.5:ENST00000584192.5:ENST00000580296.5:ENST00000345415.11:ENST00000581202.5:ENST00000374611.9:ENST00000457415.7:ENST00000581795.5:ENST00000584411.5:ENST00000577812.5:ENST00000581743.5:ENST00000577432.5:ENST00000582907.5:ENST00000309794.16:ENST00000578082.5:ENST00000580748.1:ENST00000577410.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	17	170	2	1.76156	1.9034	2.04524	0.0090047	0.00139039	0.0803518	0.0341261
chr7	139377154	139377254	3437768	0	+	0.32	(0.28,0.32]	chr7	320340	6	INTRON	INTRON	LUC7L2:FMC1-LUC7L2	ENSG00000146963.18:ENSG00000269955.2	ENST00000541170.7:ENST00000541515.3:ENST00000608368.5:ENST00000619796.4:ENST00000354926.9:ENST00000456182.5:ENST00000263545.7:ENST00000463912.5:ENST00000498518.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	70	2	1.47299	1.9034	2.33381	0.0597769	0.0174951	0.189982	0.104863
chr6	87699511	87699611	3152894	0	-	0.31	(0.28,0.32]	chr6	294114	174	INTRON	INTRON	AKIRIN2	ENSG00000135334.9	ENST00000257787.6	protein_coding	protein_coding	protein_coding	protein_coding	14	164	2	1.9023	1.9033950000000002	1.90449	0.00997788	0.00433766	0.0843102	0.0601014
chr22	21507049	21507149	7560161	0	-	0.37	(0.35,0.378]	chr22	773318	146	INTRON	INTRON	PI4KAP2	ENSG00000183506.17	ENST00000450651.5:ENST00000467443.5:ENST00000479693.1:ENST00000476537.1:ENST00000491562.5	transcribed_unitary_pseudogene	retained_intron	transcribed_unitary_pseudogene	retained_intron:processed_transcript	13	131	2	1.68407	1.903355	2.12264	0.0148638	0.0023865	0.0989021	0.0450097
chr7	119892003	119892103	3630261	0	-	0.3	(0.28,0.32]	chr7	337335	908	INTRON	INTRON	LINC02476	ENSG00000225546.6	ENST00000660268.1:ENST00000431071.5:ENST00000426413.2	lncRNA	lncRNA	lncRNA	lncRNA	12	136	2	1.43233	1.90333	2.37433	0.028373	0.00356769	0.138205	0.0532113
chr5	65934799	65934899	2370926	0	+	0.39	(0.378,0.408]	chr5	228472	76	INTRON	INTRON	ERBIN	ENSG00000112851.15	ENST00000380943.6:ENST00000507490.1:ENST00000416865.6:ENST00000380935.5:ENST00000284037.10:ENST00000380938.6:ENST00000511297.5:ENST00000506030.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	50	2	1.76032	1.90327	2.04622	0.0721577	0.0149927	0.187433	0.107704
chr7	129035756	129035856	3636389	0	-	0.33	(0.32,0.35]	chr7	338142	172	INTRON	INTRON	TNPO3	ENSG00000064419.14	ENST00000627585.2:ENST00000265388.10:ENST00000471234.5:ENST00000482320.5:ENST00000471166.1	protein_coding	protein_coding	protein_coding	protein_coding	5	48	2	1.49965	1.90319	2.30673	0.0584434	0.0542985	0.182243	0.167723
chr9	135944237	135944333	4372389	0	-	0.5625	(0.515,0.57]	chr9	402520	16	INTRON	INTRON	UBAC1	ENSG00000130560.9	ENST00000371756.4:ENST00000489050.5:ENST00000465873.5:ENST00000471163.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	63	2	1.44237	1.903185	2.364	0.0456196	0.00447856	0.164236	0.0593175
chr12	132800867	132800967	5449930	0	-	0.51	(0.476,0.515]	chr12	522063	20	INTRON	INTRON	GOLGA3	ENSG00000090615.16	ENST00000204726.9:ENST00000450791.8:ENST00000693666.1:ENST00000688114.1:ENST00000687190.1:ENST00000690511.1:ENST00000685283.1:ENST00000691696.1:ENST00000691636.1:ENST00000690897.1:ENST00000690465.1:ENST00000456883.7:ENST00000692253.1:ENST00000687502.1:ENST00000688772.1:ENST00000687479.1:ENST00000690709.1:ENST00000545875.4:ENST00000688251.1:ENST00000690573.1:ENST00000685195.1:ENST00000686425.1:ENST00000693437.1:ENST00000692831.1:ENST00000688068.1:ENST00000692951.1:ENST00000689441.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	13	92	2	1.30691	1.9031600000000002	2.49941	0.0271627	0.00811651	0.136428	0.0766625
chr11	65432359	65432458	4805866	0	+	0.30303	(0.28,0.32]	chr11	446554	97	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2:ENST00000687943.1	lncRNA	lncRNA	lncRNA	lncRNA	18	192	2	1.6145	1.903155	2.19181	0.0073237	0.00461581	0.0763385	0.0598418
chr5	32427281	32427381	2599154	0	-	0.58	(0.57,1]	chr5	246966	68	INTRON	INTRON	ZFR	ENSG00000056097.16	ENST00000265069.13:ENST00000505366.1:ENST00000505204.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	34	2	1.71424	1.903155	2.09207	0.0279017	0.0121228	0.137011	0.090965
chr1	92835689	92835789	162464	0	+	0.35	(0.32,0.35]	chr1	17534	1	SS3_PROX	SS3_PROX:INTRON	RPL5	ENSG00000122406.14	ENST00000645300.1:ENST00000370321.8:ENST00000645119.1:ENST00000470843.5:ENST00000315741.5:ENST00000461952.1:ENST00000645908.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	18	203	2	1.22668	1.90315	2.57962	0.0389728	3.13993e-4	0.160909	0.0163162
chr2	44361279	44361379	1111111	0	-	0.59	(0.57,1]	chr2	119246	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	PREPL	ENSG00000138078.16	ENST00000409411.6:ENST00000541738.5:ENST00000409957.5:ENST00000409936.5:ENST00000409272.5:ENST00000410081.5:ENST00000540817.1:ENST00000438314.1:ENST00000477410.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	48	2	1.64729	1.903095	2.1589	0.0231375	0.00252118	0.118148	0.0465056
chr9	112327146	112327246	4317896	0	-	0.45	(0.44,0.476]	chr9	397079	289	INTRON	INTRON	PTBP3	ENSG00000119314.16	ENST00000334318.10:ENST00000458258.5:ENST00000374257.6:ENST00000374255.6:ENST00000343327.6:ENST00000487997.1:ENST00000210227.4:ENST00000450374.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	111	2	1.88052	1.90308	1.92564	0.00808369	0.00555103	0.0766625	0.0675005
chr3	196071902	196072002	1897449	0	-	0.29	(0.28,0.32]	chr3	189963	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TFRC	ENSG00000072274.13	ENST00000420415.5:ENST00000360110.9:ENST00000392396.7:ENST00000421258.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	24	282	2	1.57889	1.90303	2.22717	0.0134872	3.80064e-4	0.0949306	0.0176313
chr2	131061580	131061680	1228772	0	-	0.54	(0.515,0.57]	chr2	130981	55	INTRON	INTRON	FAM168B	ENSG00000152102.18	ENST00000389915.4:ENST00000409185.5	protein_coding	protein_coding	protein_coding	protein_coding	4	34	2	1.86007	1.902985	1.9459	0.0526611	0.0429089	0.178401	0.148082
chr7	105328464	105328564	3603301	0	-	0.56	(0.515,0.57]	chr7	336161	215	INTRON	INTRON	SRPK2	ENSG00000135250.17	ENST00000393651.8:ENST00000482897.5:ENST00000460391.5:ENST00000462282.5:ENST00000465112.5:ENST00000482862.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	34	2	1.86007	1.902985	1.9459	0.0526611	0.0429089	0.178401	0.148082
chr15	75863370	75863470	6065262	0	+	0.34	(0.32,0.35]	chr15	577549	30	INTRON	INTRON	UBE2Q2	ENSG00000140367.12	ENST00000569423.5:ENST00000267938.9:ENST00000561723.5:ENST00000561851.5:ENST00000426727.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	15	153	2	1.64304	1.902975	2.16291	0.00853481	0.00452463	0.0835782	0.0595107
chr6	43179865	43179962	2869855	0	+	0.237113	[0,0.28]	chr6	271845	8	UTR3	UTR3:EXON_MRNA	SRF	ENSG00000112658.8	ENST00000265354.6	protein_coding	protein_coding	protein_coding	protein_coding	5	71	2	1.69895	1.902915	2.10688	0.0568939	0.0307985	0.167723	0.143385
chr6	87700509	87700593	3152904	0	-	0.416667	(0.408,0.44]	chr6	294115	1	EXON_LNCRNA	EXON_LNCRNA:INTRON	AKIRIN2	ENSG00000135334.9	ENST00000257787.6:ENST00000420494.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	17	158	2	1.14366	1.902905	2.66215	0.0589879	6.68072e-5	0.167915	0.00677892
chr10	17446164	17446264	4568934	0	-	0.36	(0.35,0.378]	chr10	421387	552	INTRON	INTRON	ST8SIA6	ENSG00000148488.17	ENST00000377602.5:ENST00000648997.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	13	131	2	1.88704	1.9028800000000001	1.91872	0.00775641	0.00509272	0.0757402	0.0646039
chrX	154750053	154750153	7915310	0	-	0.38	(0.378,0.408]	chrX	806107	334	INTRON	INTRON	GAB3	ENSG00000160219.12	ENST00000496390.5:ENST00000424127.3:ENST00000369575.7:ENST00000369568.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	53	2	1.81685	1.902865	1.98888	0.0597868	0.0205239	0.189982	0.110999
chr3	6598144	6598244	1357225	0	+	0.42	(0.408,0.44]	chr3	142522	137	INTRON	INTRON	ENSG00000189229	ENSG00000189229.12	ENST00000433639.1:ENST00000655754.1:ENST00000658468.1:ENST00000669512.1:ENST00000667028.1:ENST00000655541.1:ENST00000668643.1:ENST00000671568.1:ENST00000671036.1:ENST00000669798.1:ENST00000655753.1:ENST00000655856.1:ENST00000658398.1:ENST00000661518.1:ENST00000661279.1:ENST00000655495.1:ENST00000663041.1:ENST00000659827.1:ENST00000667716.1:ENST00000668416.1:ENST00000658133.1:ENST00000342990.4:ENST00000660054.1:ENST00000671370.1	lncRNA	lncRNA	lncRNA	lncRNA	12	107	2	1.47936	1.902775	2.32619	0.0242689	0.00239266	0.12011	0.0450826
chr7	99476980	99477079	3362092	0	+	0.343434	(0.32,0.35]	chr7	314031	1	INTRON	INTRON	ZNF789	ENSG00000198556.14	ENST00000331410.10:ENST00000448667.5:ENST00000481472.5:ENST00000483089.5:ENST00000488485.5:ENST00000493485.5:ENST00000447047.6:ENST00000379724.3:ENST00000465438.1:ENST00000468705.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	58	2	1.8526	1.902655	1.95271	0.0431213	0.0332438	0.162255	0.134145
chrX	151406721	151406819	7735207	0	+	0.265306	[0,0.28]	chrX	791463	18	UTR3	UTR3:EXON_MRNA	VMA21	ENSG00000160131.14	ENST00000330374.7	protein_coding	protein_coding	protein_coding	protein_coding	5	70	2	1.66929	1.902495	2.1357	0.0537506	0.0338175	0.180803	0.134476
chr10	119596653	119596747	4706035	0	-	0.680851	(0.57,1]	chr10	434256	3	UTR5	UTR5:EXON_MRNA	TIAL1	ENSG00000151923.18	ENST00000436547.7:ENST00000489822.5:ENST00000497671.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	14	63	2	1.60786	1.90246	2.19706	0.00927664	0.00202095	0.0855292	0.04086
chr1	182844333	182844433	273027	0	+	0.36	(0.35,0.378]	chr1	31871	5	INTRON	INTRON	DHX9	ENSG00000135829.17	ENST00000367549.4:ENST00000483416.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	14	141	2	1.78395	1.90244	2.02093	0.0101597	0.00273111	0.0850389	0.0483033
chr17	42476838	42476938	6611471	0	+	0.38	(0.378,0.408]	chr17	644092	55	INTRON	INTRON	ATP6V0A1	ENSG00000033627.17	ENST00000393829.6:ENST00000343619.9:ENST00000537728.5:ENST00000588901.5:ENST00000264649.10:ENST00000585525.5:ENST00000544137.5:ENST00000589727.5:ENST00000592324.1:ENST00000587375.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	74	2	1.2488	1.902435	2.55607	0.0562531	0.00704647	0.184145	0.0718189
chr1	109989340	109989440	181495	0	+	0.32	(0.28,0.32]	chr1	20025	34	INTRON	INTRON	AHCYL1	ENSG00000168710.18	ENST00000369799.10:ENST00000393614.8:ENST00000475081.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	84	2	1.9021	1.9022549999999998	1.90241	0.0304779	0.0157236	0.130699	0.109464
chr1	27449816	27449916	406361	0	-	0.51	(0.476,0.515]	chr1	48986	205	INTRON	INTRON	WASF2	ENSG00000158195.11	ENST00000618852.5:ENST00000536657.1	protein_coding	protein_coding	protein_coding	protein_coding	6	48	2	1.57103	1.90219	2.23335	0.0634557	0.0307896	0.177047	0.143385
chr18	9117337	9117386	6868740	0	+	0.326531	(0.32,0.35]	chr18	680511	1	SS3_PROX	SS3_PROX:INTRON	NDUFV2	ENSG00000178127.13	ENST00000577703.1:ENST00000318388.11:ENST00000583375.5:ENST00000400033.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	12	131	2	1.67688	1.902135	2.12739	0.0361676	0.00130642	0.138959	0.0333932
chr1	749904	750004	357466	0	-	0.42	(0.408,0.44]	chr1	41168	27	INTRON	INTRON	ENSG00000230021:ENSG00000228327	ENSG00000230021.10:ENSG00000228327.4	ENST00000634337.2:ENST00000635509.2:ENST00000506640.2	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene:transcribed_unprocessed_pseudogene	processed_transcript	7	62	2	1.35739	1.9020650000000001	2.44674	0.063317	0.00868283	0.177047	0.0842798
chr16	29592489	29592589	6471525	0	-	0.52	(0.515,0.57]	chr16	625297	228	INTRON	INTRON	ENSG00000288632:SMG1P2	ENSG00000288632.1:ENSG00000205534.6	ENST00000675579.1:ENST00000566127.1	lncRNA	lncRNA	lncRNA:transcribed_unprocessed_pseudogene	lncRNA:transcribed_unprocessed_pseudogene	12	94	2	1.83228	1.90206	1.97184	0.00854719	0.0041442	0.0780217	0.0589266
chr2	177222867	177222966	926024	0	+	0.383838	(0.378,0.408]	chr2	101764	37	UTR3	UTR3:EXON_MRNA	HNRNPA3	ENSG00000170144.21	ENST00000679159.1:ENST00000678111.1:ENST00000678421.1:ENST00000677863.1:ENST00000676681.1:ENST00000676629.1:ENST00000677337.1:ENST00000676488.1:ENST00000677043.1:ENST00000676874.1:ENST00000676762.1:ENST00000411529.6:ENST00000676736.1:ENST00000483137.2:ENST00000677508.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	42	347	2	1.30469	1.901985	2.49928	0.00966814	1.14312e-4	0.0872473	0.0096241
chr12	120860027	120860127	5435464	0	-	0.4	(0.378,0.408]	chr12	519663	245	INTRON	INTRON	SPPL3	ENSG00000157837.16	ENST00000353487.7:ENST00000536996.5:ENST00000543608.5:ENST00000543854.5	protein_coding	protein_coding	protein_coding	protein_coding	4	41	2	1.76032	1.90162	2.04292	0.0721577	0.0326035	0.187433	0.145164
chr2	38304902	38305002	1098605	0	-	0.38	(0.378,0.408]	chr2	117813	42	INTRON	INTRON	ATL2	ENSG00000119787.14	ENST00000378954.9:ENST00000406122.5:ENST00000405384.6:ENST00000402054.5:ENST00000419554.6:ENST00000651368.1:ENST00000452935.6:ENST00000629272.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	41	2	1.76032	1.90162	2.04292	0.0721577	0.0326035	0.187433	0.145164
chr5	36925250	36925350	2338915	0	+	0.4	(0.378,0.408]	chr5	225949	389	INTRON	INTRON	NIPBL	ENSG00000164190.19	ENST00000282516.13:ENST00000448238.2:ENST00000652901.1	protein_coding	protein_coding	protein_coding	protein_coding	4	41	2	1.76032	1.90162	2.04292	0.0721577	0.0326035	0.187433	0.145164
chr9	130803353	130803453	4214758	0	+	0.39	(0.378,0.408]	chr9	386427	885	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000393293.4	protein_coding	protein_coding	protein_coding	protein_coding	9	90	2	1.54765	1.90141	2.25517	0.0334147	0.00430492	0.146709	0.0577899
chr14	31011548	31011648	5857725	0	-	0.48	(0.476,0.515]	chr14	556508	472	INTRON	INTRON	STRN3	ENSG00000196792.12	ENST00000355683.9:ENST00000357479.10:ENST00000555358.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	41	2	1.48023	1.901265	2.3223	0.0559072	0.0519312	0.18407	0.159306
chr4	99036879	99036975	2003130	0	+	0.28125	(0.28,0.32]	chr4	199841	4	INTRON	INTRON	METAP1	ENSG00000164024.12	ENST00000510209.5:ENST00000296411.11:ENST00000507537.5:ENST00000506238.5:ENST00000503247.5:ENST00000510107.5:ENST00000513199.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	11	127	2	1.54386	1.901185	2.25851	0.0227817	0.00557435	0.125323	0.0649303
chr7	140475934	140476034	3661601	0	-	0.39	(0.378,0.408]	chr7	339948	2	INTRON	INTRON	MKRN1	ENSG00000133606.11	ENST00000255977.7:ENST00000475010.5:ENST00000495305.5:ENST00000474576.5:ENST00000480552.5:ENST00000496169.5:ENST00000443720.6:ENST00000471104.5:ENST00000467513.5:ENST00000494939.1:ENST00000498535.1:ENST00000473444.1:ENST00000475180.5:ENST00000481705.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	57	2	1.39189	1.90113	2.41037	0.0751636	0.0100185	0.193731	0.0880217
chr11	72226147	72226244	4824441	0	+	0.463918	(0.44,0.476]	chr11	450040	6	INTRON	INTRON	INPPL1	ENSG00000165458.15	ENST00000298229.7:ENST00000541544.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	73	2	1.49531	1.90102	2.30673	0.0421587	0.0055175	0.148082	0.0672816
chr5	139279395	139279484	2499229	0	+	0.460674	(0.44,0.476]	chr5	238882	4	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MATR3:SNHG4	ENSG00000280987.4:ENSG00000281398.4	ENST00000509990.5:ENST00000506147.5:ENST00000512107.5:ENST00000648842.1:ENST00000448190.6:ENST00000361059.7:ENST00000506188.5:ENST00000394800.6:ENST00000502929.5:ENST00000504203.5:ENST00000514694.5:ENST00000513259.5:ENST00000507197.5:ENST00000509644.5:ENST00000505016.2:ENST00000505522.6:ENST00000514110.5:ENST00000502394.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	15	142	2	1.86755	1.901	1.93445	0.00715715	0.0030103	0.0756118	0.0493883
chr16	68322197	68322289	6372375	0	+	0.413043	(0.408,0.44]	chr16	612414	8	UTR3	UTR3:EXON_MRNA:INTRON	PRMT7	ENSG00000132600.18	ENST00000686904.1:ENST00000562381.7:ENST00000689486.1:ENST00000693200.1:ENST00000685141.1:ENST00000562050.6:ENST00000565745.6:ENST00000685109.1:ENST00000689637.1:ENST00000692867.1:ENST00000693670.1:ENST00000692760.1:ENST00000687654.1:ENST00000441236.3:ENST00000675132.1:ENST00000688470.1:ENST00000691833.1:ENST00000690432.1:ENST00000691804.1:ENST00000691961.1:ENST00000690932.1:ENST00000692632.1:ENST00000687444.1:ENST00000692283.1:ENST00000569571.5:ENST00000692621.1:ENST00000566341.5:ENST00000686053.1:ENST00000692966.1:ENST00000691663.1:ENST00000564050.6:ENST00000449359.7:ENST00000569047.7:ENST00000693309.1:ENST00000690311.1:ENST00000565356.5:ENST00000564441.6:ENST00000563520.5:ENST00000687558.1:ENST00000339507.9:ENST00000688969.1:ENST00000568975.5:ENST00000563562.5:ENST00000561806.5:ENST00000562456.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	87	2	1.84301	1.9009399999999999	1.9588699999999999	0.0174311	0.00847845	0.112689	0.0778146
chr2	69831351	69831451	804763	0	+	0.25	[0,0.28]	chr2	89785	8	INTRON	INTRON	GMCL1	ENSG00000087338.5	ENST00000282570.4:ENST00000468386.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	89	2	1.59519	1.900805	2.20642	0.0331097	0.0280845	0.145786	0.125065
chr12	49137403	49137503	5131433	0	+	0.49	(0.476,0.515]	chr12	483824	52	INTRON	INTRON	ENSG00000258017	ENSG00000258017.3	ENST00000656133.1:ENST00000665211.1:ENST00000547712.1:ENST00000664160.1:ENST00000551496.1	lncRNA	lncRNA	lncRNA	lncRNA	7	70	2	1.68092	1.90075	2.12058	0.0474026	0.00686728	0.169265	0.071646
chr15	64521453	64521553	6044698	0	+	0.32	(0.28,0.32]	chr15	575696	185	INTRON	INTRON	ZNF609	ENSG00000180357.10	ENST00000326648.5:ENST00000558680.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	84	2	1.83303	1.90072	1.96841	0.0370023	0.0124199	0.139194	0.0973643
chr17	30139317	30139417	6587615	0	+	0.38	(0.378,0.408]	chr17	640563	112	INTRON	INTRON	NSRP1	ENSG00000126653.18	ENST00000540900.7:ENST00000612959.4:ENST00000247026.10:ENST00000577289.6:ENST00000584154.5:ENST00000394826.8:ENST00000475652.5:ENST00000584317.5:ENST00000583301.5:ENST00000585881.5:ENST00000467446.6:ENST00000580103.6:ENST00000581048.5:ENST00000588614.1:ENST00000589608.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	60	2	1.53052	1.90066	2.2708	0.0744544	0.00646593	0.192012	0.073179
chr11	62593496	62593590	4959792	0	-	0.43617	(0.408,0.44]	chr11	466322	4	UTR3	UTR3:EXON_MRNA	MTA2	ENSG00000149480.7	ENST00000278823.7:ENST00000524902.5	protein_coding	protein_coding	protein_coding	protein_coding	18	167	2	1.84697	1.90063	1.95429	0.00346972	0.00281402	0.0539943	0.0472014
chr5	134002889	134002989	2726046	0	-	0.51	(0.476,0.515]	chr5	256466	95	INTRON	INTRON	VDAC1	ENSG00000213585.11	ENST00000265333.8:ENST00000395044.7:ENST00000395047.6:ENST00000425992.2:ENST00000466080.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	57	2	1.88582	1.900535	1.91525	0.0273268	0.0232571	0.127416	0.123904
chr16	31119122	31119216	6340415	0	+	0.446809	(0.44,0.476]	chr16	608269	5	INTRON	INTRON	KAT8	ENSG00000103510.20	ENST00000543774.6:ENST00000219797.9:ENST00000448516.6:ENST00000539683.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	94	2	1.833	1.900525	1.96805	0.0109533	0.00977742	0.0925675	0.0835427
chr16	47623519	47623619	6344942	0	+	0.33	(0.32,0.35]	chr16	608950	42	INTRON	INTRON	PHKB	ENSG00000102893.17	ENST00000566044.5:ENST00000299167.12:ENST00000696809.1:ENST00000323584.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	77	2	1.57443	1.90049	2.22655	0.048436	0.00823133	0.153635	0.0812969
chr2	108561725	108561825	846119	0	+	0.46	(0.44,0.476]	chr2	94661	268	INTRON	INTRON	LIMS1	ENSG00000169756.17	ENST00000695516.1:ENST00000544547.6:ENST00000695517.1	protein_coding	protein_coding	protein_coding	protein_coding	9	84	2	1.70763	1.90048	2.09333	0.0190437	0.00776307	0.118994	0.0757646
chr1	71066124	71066217	482871	0	-	0.344086	(0.32,0.35]	chr1	57844	5	EXON_LNCRNA	EXON_LNCRNA:SS3_PROX:INTRON	ZRANB2	ENSG00000132485.14	ENST00000370920.8:ENST00000477096.1:ENST00000254821.10:ENST00000487510.1:ENST00000479947.1:ENST00000473260.1:ENST00000611683.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	137	2	1.82047	1.9004699999999999	1.98047	0.00919797	0.00567197	0.0815812	0.0678837
chr19	2038522	2038621	7114590	0	-	0.646465	(0.57,1]	chr19	715026	8	UTR3	UTR3:EXON_MRNA:INTRON	MKNK2	ENSG00000099875.16	ENST00000309340.11:ENST00000591142.5:ENST00000589441.5:ENST00000250896.9:ENST00000587416.5:ENST00000588014.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	14	60	2	1.22227	1.900465	2.57866	0.0397986	5.14593e-4	0.161534	0.0208667
chr11	86061261	86061361	5014765	0	-	0.41	(0.408,0.44]	chr11	473022	293	INTRON	INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000630913.2:ENST00000528398.5:ENST00000356360.9:ENST00000534412.5:ENST00000531558.1:ENST00000531930.5:ENST00000532041.5:ENST00000525162.5:ENST00000528256.1:ENST00000528411.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	49	441	2	1.74949	1.90041	2.05133	0.00203138	1.37318e-4	0.04086	0.0100829
chr6	149756535	149756634	2996102	0	+	0.515152	(0.476,0.515]	chr6	280342	59	INTRON	INTRON	PCMT1	ENSG00000120265.19	ENST00000367384.7:ENST00000367378.6:ENST00000484601.6:ENST00000367380.9:ENST00000544496.5:ENST00000649295.1:ENST00000494411.6:ENST00000460828.6:ENST00000464889.7:ENST00000486585.2:ENST00000495487.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	18	163	2	1.85172	1.90036	1.949	0.00430147	0.00210201	0.0577616	0.0425419
chr3	6584364	6584456	1357087	0	+	0.358696	(0.35,0.378]	chr3	142521	9	EXON_LNCRNA	EXON_LNCRNA:INTRON	ENSG00000189229	ENSG00000189229.12	ENST00000433639.1:ENST00000655754.1:ENST00000653839.1:ENST00000662846.1:ENST00000414438.2:ENST00000658468.1:ENST00000669512.1:ENST00000667028.1:ENST00000655541.1:ENST00000668643.1:ENST00000671568.1:ENST00000671036.1:ENST00000669798.1:ENST00000655753.1:ENST00000655856.1:ENST00000658398.1:ENST00000661518.1:ENST00000661279.1:ENST00000655495.1:ENST00000663041.1:ENST00000659827.1:ENST00000667716.1:ENST00000662508.1:ENST00000668416.1:ENST00000658133.1:ENST00000342990.4:ENST00000660054.1:ENST00000671370.1	lncRNA	lncRNA	lncRNA	lncRNA	7	66	2	1.47599	1.900315	2.32464	0.0425671	0.0159285	0.162011	0.101453
chr15	64533049	64533149	6044814	0	+	0.49	(0.476,0.515]	chr15	575696	301	INTRON	INTRON	ZNF609	ENSG00000180357.10	ENST00000326648.5:ENST00000558680.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	58	2	1.74317	1.900155	2.05714	0.0396373	0.0156961	0.161534	0.101453
chr3	191448776	191448876	1590415	0	+	0.48	(0.476,0.515]	chr3	164637	228	INTRON	INTRON	ENSG00000223812	ENSG00000223812.8	ENST00000657540.1:ENST00000439804.6:ENST00000663647.1:ENST00000668751.1:ENST00000666632.1:ENST00000664732.1:ENST00000662007.1:ENST00000641158.1:ENST00000664994.1:ENST00000669884.1:ENST00000642133.1:ENST00000656380.1:ENST00000641055.1:ENST00000662578.1:ENST00000661668.1:ENST00000658347.1:ENST00000661029.1:ENST00000651548.2:ENST00000669360.1:ENST00000653490.1:ENST00000656942.1:ENST00000666456.1:ENST00000668276.1:ENST00000671595.1:ENST00000660290.1	lncRNA	lncRNA	lncRNA	lncRNA	6	58	2	1.74317	1.900155	2.05714	0.0396373	0.0156961	0.161534	0.101453
chr8	17928746	17928846	3707784	0	+	0.46	(0.44,0.476]	chr8	343815	9	INTRON	INTRON	PCM1	ENSG00000078674.19	ENST00000518930.1:ENST00000325083.13:ENST00000517730.5:ENST00000518537.5:ENST00000518936.5:ENST00000523055.5:ENST00000519253.5:ENST00000524226.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	66	2	1.71574	1.9001350000000001	2.08453	0.045256	0.00689	0.149888	0.0750118
chr7	128536329	128536429	3407407	0	+	0.43	(0.408,0.44]	chr7	318333	22	INTRON	INTRON	ENSG00000280828	ENSG00000280828.1	ENST00000479267.2	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	14	131	2	1.4685	1.9000650000000001	2.33163	0.029918	4.88329e-4	0.129138	0.0199693
chr22	21669133	21669233	7482475	0	+	0.52	(0.515,0.57]	chr22	763312	4	SS3_PROX	SS3_PROX:INTRON	ENSG00000207751:PPIL2	ENSG00000207751.3:ENSG00000100023.20	ENST00000498589.1:ENST00000679795.1:ENST00000679540.1:ENST00000679580.1:ENST00000681286.1:ENST00000680061.1:ENST00000681338.1:ENST00000681956.1:ENST00000679827.1:ENST00000679534.1:ENST00000679479.1:ENST00000680393.1:ENST00000680463.1:ENST00000680426.1:ENST00000335025.12:ENST00000498109.2:ENST00000496819.2:ENST00000398831.8:ENST00000681394.1:ENST00000679477.1:ENST00000626352.2:ENST00000417788.5:ENST00000458567.5:ENST00000681791.1:ENST00000679692.1:ENST00000680962.1:ENST00000679857.1:ENST00000679586.1:ENST00000680094.1:ENST00000484439.5:ENST00000680434.1:ENST00000680109.1:ENST00000406385.1:ENST00000680022.1:ENST00000681137.1:ENST00000680860.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA:processed_transcript	11	84	2	1.56082	1.900045	2.23927	0.0193183	0.00328621	0.108861	0.0527031
chr1	32633354	32633454	415543	0	-	0.29	(0.28,0.32]	chr1	50129	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ZBTB8OS	ENSG00000176261.16	ENST00000341885.6:ENST00000468695.6:ENST00000492007.6:ENST00000373506.8:ENST00000436661.6:ENST00000473294.7:ENST00000373501.6:ENST00000498691.5:ENST00000476493.6:ENST00000465588.2:ENST00000483138.5:ENST00000479075.6:ENST00000473383.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	45	2	1.61031	1.90003	2.18975	0.0776042	0.0600513	0.196285	0.190658
chr1	93122481	93122580	162984	0	+	0.313131	(0.28,0.32]	chr1	17612	12	INTRON	INTRON	MTF2	ENSG00000143033.18	ENST00000540243.5:ENST00000545708.5:ENST00000370298.9:ENST00000471953.5:ENST00000370303.4:ENST00000467953.5:ENST00000497976.5:ENST00000476037.5:ENST00000487263.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	45	2	1.61031	1.90003	2.18975	0.0776042	0.0600513	0.196285	0.190658
chr15	68121262	68121362	6056626	0	+	0.29	(0.28,0.32]	chr15	576567	330	INTRON	INTRON	PIAS1	ENSG00000033800.14	ENST00000564915.5:ENST00000249636.11:ENST00000562190.1:ENST00000545237.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	45	2	1.61031	1.90003	2.18975	0.0776042	0.0600513	0.196285	0.190658
chr2	31883462	31883562	1089836	0	-	0.29	(0.28,0.32]	chr2	116865	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	MEMO1:DPY30	ENSG00000162959.14:ENSG00000162961.14	ENST00000295065.9:ENST00000446765.5:ENST00000404530.6:ENST00000379383.7:ENST00000490459.5:ENST00000426310.6:ENST00000422936.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	45	2	1.61031	1.90003	2.18975	0.0776042	0.0600513	0.196285	0.190658
chr2	151827179	151827279	1243730	0	-	0.29	(0.28,0.32]	chr2	132064	116	INTRON	INTRON	ARL5A:ENSG00000283228	ENSG00000162980.17:ENSG00000283228.1	ENST00000446896.7:ENST00000295087.13:ENST00000636024.1:ENST00000637224.1:ENST00000458140.6:ENST00000428992.2:ENST00000637559.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	45	2	1.61031	1.90003	2.18975	0.0776042	0.0600513	0.196285	0.190658
chr8	9024730	9024830	3695783	0	+	0.3	(0.28,0.32]	chr8	342937	39	INTRON	INTRON	ERI1	ENSG00000104626.15	ENST00000519292.5:ENST00000250263.8:ENST00000520332.5:ENST00000518663.1:ENST00000522612.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	45	2	1.61031	1.90003	2.18975	0.0776042	0.0600513	0.196285	0.190658
chr7	102569373	102569461	3588848	0	-	0.545455	(0.515,0.57]	chr7	335046	3	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	POLR2J3	ENSG00000168255.20:ENSG00000285437.2	ENST00000489144.5:ENST00000464525.5:ENST00000379340.9:ENST00000486319.5:ENST00000513506.6:ENST00000508848.5:ENST00000506060.5:ENST00000502415.5:ENST00000507355.5:ENST00000608621.5:ENST00000511313.5:ENST00000504157.5:ENST00000508910.5:ENST00000621093.4:ENST00000443430.2:ENST00000513438.1:ENST00000504101.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	48	2	1.68687	1.9	2.11313	0.0300837	0.0256725	0.133676	0.129186
chr16	31182297	31182397	6340574	0	+	0.33	(0.32,0.35]	chr16	608319	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	FUS	ENSG00000089280.19	ENST00000566605.5:ENST00000254108.12:ENST00000380244.7:ENST00000487045.6:ENST00000487509.6:ENST00000568685.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	16	161	2	1.47319	1.899985	2.32678	0.0179099	0.00272092	0.106423	0.0481508
chr7	158771748	158771847	3689229	0	-	0.515152	(0.476,0.515]	chr7	342387	36	INTRON	INTRON	ESYT2	ENSG00000117868.18	ENST00000251527.10:ENST00000275418.13:ENST00000652148.1	protein_coding	protein_coding	protein_coding	protein_coding	9	79	2	1.66417	1.89995	2.13573	0.0164481	0.0119549	0.110077	0.0899583
chr1	1885964	1886064	362790	0	-	0.49	(0.476,0.515]	chr1	42311	459	INTRON	INTRON	GNB1	ENSG00000078369.18	ENST00000610897.4:ENST00000615252.4:ENST00000378609.9:ENST00000439272.6:ENST00000434686.6:ENST00000472614.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	60	2	1.38864	1.899925	2.41121	0.0547008	0.0110342	0.182743	0.0873897
chr3	101576914	101577013	1468430	0	+	0.515152	(0.476,0.515]	chr3	153930	16	INTRON	INTRON	PCNP	ENSG00000081154.12	ENST00000265260.8:ENST00000498274.5:ENST00000460231.5:ENST00000469941.5:ENST00000627393.1:ENST00000486406.5:ENST00000470490.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	60	2	1.38864	1.899925	2.41121	0.0547008	0.0110342	0.182743	0.0873897
chr21	6326965	6327064	7364843	0	+	0.393939	(0.378,0.408]	chr21	751664	25	INTRON	INTRON	ENSG00000278903	ENSG00000278903.4	ENST00000688458.1:ENST00000689306.1:ENST00000692898.1:ENST00000624576.3:ENST00000623738.3:ENST00000692237.1:ENST00000692046.1:ENST00000689354.1:ENST00000624165.1	lncRNA	lncRNA	lncRNA	lncRNA	10	79	2	1.2437	1.899885	2.55607	0.049286	0.00704647	0.174117	0.0718189
chr9	112148843	112148943	4316516	0	-	0.43	(0.408,0.44]	chr9	396982	2	SS5_PROX	SS5_PROX:INTRON	SUSD1	ENSG00000106868.17	ENST00000374270.8:ENST00000374263.7:ENST00000355396.7:ENST00000374264.6	protein_coding	protein_coding	protein_coding	protein_coding	6	55	2	1.43792	1.899885	2.36185	0.062843	0.0133164	0.196433	0.094512
chr16	89581564	89581662	6420980	0	+	0.408163	(0.378,0.408]	chr16	616342	22	INTRON	INTRON	CPNE7	ENSG00000178773.15	ENST00000319518.13:ENST00000268720.9:ENST00000525982.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	19	170	2	1.3912	1.899865	2.40853	0.0197756	5.14801e-4	0.109608	0.0203753
chr1	29061983	29062083	60449	0	+	0.35	(0.32,0.35]	chr1	7726	11	INTRON	INTRON	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000647918.1:ENST00000646800.1:ENST00000644342.1:ENST00000646189.1:ENST00000482464.6:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000646260.1:ENST00000373798.5:ENST00000644600.1:ENST00000649674.1:ENST00000643173.1:ENST00000343067.9:ENST00000644780.1:ENST00000650265.1:ENST00000648181.1:ENST00000643604.1:ENST00000648891.1:ENST00000373797.2:ENST00000349460.9:ENST00000645184.1:ENST00000645111.1:ENST00000643302.1:ENST00000642643.1:ENST00000636666.1:ENST00000644848.1:ENST00000644470.1:ENST00000646871.1:ENST00000488277.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	54	2	1.42176	1.89985	2.37794	0.0511006	0.0498601	0.176696	0.156383
chr17	31877749	31877849	6752669	0	-	0.49	(0.476,0.515]	chr17	663754	1	SS5_PROX	SS5_PROX:INTRON	UTP6	ENSG00000108651.10	ENST00000261708.9:ENST00000477128.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	79	2	1.48441	1.89985	2.31529	0.0315624	0.00614783	0.144381	0.0676501
chr1	52826548	52826647	104895	0	+	0.343434	(0.32,0.35]	chr1	13715	51	UTR3	UTR3:EXON_MRNA	ZYG11B	ENSG00000162378.13	ENST00000294353.7	protein_coding	protein_coding	protein_coding	protein_coding	5	56	2	1.60297	1.899825	2.19668	0.0647328	0.021398	0.179192	0.123719
chr16	16526109	16526209	6311123	0	+	0.33	(0.32,0.35]	chr16	604098	261	INTRON	INTRON	ENSG00000260126	ENSG00000260126.2	ENST00000567465.2	lncRNA	lncRNA	lncRNA	lncRNA	5	56	2	1.60297	1.899825	2.19668	0.0647328	0.021398	0.179192	0.123719
chr4	110181060	110181160	2227559	0	-	0.39	(0.378,0.408]	chr4	218024	751	INTRON	INTRON	ELOVL6	ENSG00000170522.10	ENST00000394607.7:ENST00000302274.8:ENST00000514184.5:ENST00000506625.5:ENST00000506461.1:ENST00000503885.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	76	2	1.44787	1.899775	2.35168	0.0496837	0.0046563	0.156383	0.0629753
chr11	31462282	31462379	4938760	0	-	0.350515	(0.35,0.378]	chr11	462571	12	INTRON	INTRON	IMMP1L	ENSG00000148950.11	ENST00000532287.6:ENST00000534812.5:ENST00000526776.5:ENST00000278200.5:ENST00000648582.1:ENST00000533642.1:ENST00000527184.5:ENST00000528161.5:ENST00000532624.5:ENST00000529749.5:ENST00000530023.5:ENST00000531693.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	52	2	1.5118	1.89975	2.2877	0.0789277	0.0155765	0.198963	0.109411
chr3	10276588	10276688	1364331	0	+	0.49	(0.476,0.515]	chr3	143787	1	SS5_PROX	SS5_PROX:INTRON	TATDN2	ENSG00000157014.11	ENST00000287652.8:ENST00000448281.7:ENST00000426850.1:ENST00000496355.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	65	2	1.78315	1.899665	2.01618	0.0215899	0.0180082	0.123836	0.106756
chr12	76060909	76061009	5369980	0	-	0.47	(0.44,0.476]	chr12	512304	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	NAP1L1	ENSG00000187109.15	ENST00000618691.5:ENST00000552056.5:ENST00000393263.7:ENST00000431879.7:ENST00000552147.5:ENST00000547773.5:ENST00000544816.5:ENST00000542344.5:ENST00000535020.6:ENST00000549596.5:ENST00000552342.5:ENST00000547529.6:ENST00000548044.5:ENST00000550934.5:ENST00000551992.5:ENST00000548273.5:ENST00000551600.5:ENST00000547704.5:ENST00000551524.5:ENST00000549988.5:ENST00000547479.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	87	2	1.20745	1.8996499999999998	2.59185	0.0635101	0.00200767	0.198164	0.0408395
chr3	47772316	47772416	1684981	0	-	0.47	(0.44,0.476]	chr3	172117	1	SS5_PROX	SS5_PROX:INTRON	SMARCC1	ENSG00000173473.11	ENST00000254480.10:ENST00000425518.5:ENST00000454240.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	15	130	2	1.14526	1.899615	2.65397	0.0582332	2.19841e-4	0.167723	0.0130082
chr16	22279597	22279697	6321428	0	+	0.37	(0.35,0.378]	chr16	605167	55	INTRON	INTRON	EEF2K	ENSG00000103319.12	ENST00000263026.10	protein_coding	protein_coding	protein_coding	protein_coding	4	43	2	1.75561	1.899595	2.04358	0.0739399	0.0329533	0.190914	0.145171
chr2	144461741	144461832	1241216	0	-	0.351648	(0.35,0.378]	chr2	131708	8	EXON_MRNA	EXON_MRNA:INTRON	ZEB2	ENSG00000169554.23	ENST00000636471.1:ENST00000627532.3:ENST00000638128.1:ENST00000637304.1:ENST00000636179.1:ENST00000636820.1:ENST00000419938.5:ENST00000409487.7:ENST00000636732.2:ENST00000636026.2:ENST00000675069.1:ENST00000689298.1:ENST00000539609.7:ENST00000558170.6:ENST00000303660.8:ENST00000427902.5:ENST00000637267.2:ENST00000392861.6:ENST00000431672.4:ENST00000409211.5:ENST00000465308.5:ENST00000434448.5:ENST00000472146.5:ENST00000461784.3:ENST00000476394.5:ENST00000637591.2:ENST00000479735.1:ENST00000453352.5:ENST00000435831.5:ENST00000444559.5:ENST00000630572.2:ENST00000628473.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	43	2	1.75561	1.899595	2.04358	0.0739399	0.0329533	0.190914	0.145171
chr2	174144099	174144199	1269808	0	-	0.37	(0.35,0.378]	chr2	134282	17	INTRON	INTRON	OLA1	ENSG00000138430.16	ENST00000284719.8:ENST00000344357.9:ENST00000428402.6:ENST00000409546.5:ENST00000429575.1	protein_coding	protein_coding	protein_coding	protein_coding	4	43	2	1.75561	1.899595	2.04358	0.0739399	0.0329533	0.190914	0.145171
chr6	126003770	126003869	2956235	0	+	0.363636	(0.35,0.378]	chr6	278005	38	INTRON	INTRON	TRMT11	ENSG00000066651.20	ENST00000479748.5:ENST00000368332.7:ENST00000461129.5:ENST00000648977.1:ENST00000468097.5:ENST00000334379.11	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	43	2	1.75561	1.899595	2.04358	0.0739399	0.0329533	0.190914	0.145171
chr5	72912288	72912386	2388116	0	+	0.234694	[0,0.28]	chr5	230509	37	UTR3	UTR3:EXON_MRNA	TNPO1	ENSG00000083312.19	ENST00000680533.1:ENST00000337273.10:ENST00000680025.1:ENST00000681711.1:ENST00000679378.1:ENST00000680111.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	80	2	1.49274	1.899575	2.30641	0.0592697	0.0213596	0.189982	0.113755
chr20	50600384	50600483	7354515	0	-	0.333333	(0.32,0.35]	chr20	750001	23	INTRON	INTRON	RIPOR3	ENSG00000042062.13	ENST00000327979.8:ENST00000045083.6:ENST00000462493.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	15	163	2	1.46268	1.89955	2.33642	0.0207076	0.00145651	0.122348	0.0345174
chr1	35183695	35183790	420501	0	-	0.336842	(0.32,0.35]	chr1	50651	9	UTR3	UTR3:EXON_MRNA:INTRON	SFPQ	ENSG00000116560.12	ENST00000470472.5:ENST00000460428.5:ENST00000696553.1:ENST00000357214.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	44	426	2	1.53263	1.89954	2.26645	0.00362241	4.44707e-4	0.055479	0.0194861
chr6	37172181	37172276	2855272	0	+	0.484211	(0.476,0.515]	chr6	269927	3	INTRON	INTRON	PIM1	ENSG00000137193.14	ENST00000373509.6	protein_coding	protein_coding	protein_coding	protein_coding	18	111	2	1.06343	1.8995350000000002	2.73564	0.0466267	0.00333144	0.167337	0.0512081
chr2	201480462	201480558	984904	0	+	0.4375	(0.408,0.44]	chr2	105698	4	UTR3	UTR3:EXON_MRNA	STRADB	ENSG00000082146.13	ENST00000194530.8:ENST00000392249.6:ENST00000415688.1	protein_coding	protein_coding	protein_coding	protein_coding	7	66	2	1.62122	1.8995300000000002	2.17784	0.0394247	0.00916282	0.143072	0.0855292
chr1	70230618	70230713	142691	0	+	0.263158	[0,0.28]	chr1	15992	1	EXON_MRNA	EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SRSF11	ENSG00000116754.14	ENST00000370951.5:ENST00000687381.1:ENST00000370950.7:ENST00000475204.5:ENST00000370949.2:ENST00000395136.7:ENST00000473950.5:ENST00000469170.5:ENST00000486667.5:ENST00000481648.5:ENST00000463116.1:ENST00000484162.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	47	587	2	1.59055	1.8995199999999999	2.20849	0.00410713	0.00102016	0.0584696	0.029231300000000002
chr17	35601767	35601865	6599682	0	+	0.469388	(0.44,0.476]	chr17	642245	3	INTRON	INTRON	AP2B1	ENSG00000006125.18	ENST00000589774.5:ENST00000616784.4:ENST00000621914.4:ENST00000620039.4:ENST00000616681.4:ENST00000621668.4:ENST00000610402.5:ENST00000612035.4:ENST00000591610.5:ENST00000590538.5:ENST00000614600.4:ENST00000590432.5:ENST00000612116.5:ENST00000618940.4:ENST00000592167.5:ENST00000593014.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	20	171	2	1.80603	1.8994550000000001	1.99288	0.00506305	0.00186856	0.0621733	0.040016500000000003
chr2	167935064	167935164	1259154	0	-	0.52	(0.515,0.57]	chr2	133343	1	SS3_PROX	SS3_PROX:INTRON	B3GALT1-AS1	ENSG00000235335.3	ENST00000430546.2:ENST00000657553.1:ENST00000670221.1:ENST00000436982.2:ENST00000654994.1	lncRNA	lncRNA	lncRNA	lncRNA	9	68	2	1.43349	1.899415	2.36534	0.0378274	0.00404547	0.141117	0.0578376
chr18	13018179	13018279	6876845	0	+	0.42	(0.408,0.44]	chr18	681382	3	SS3_PROX	SS3_PROX:INTRON	CEP192	ENSG00000101639.19	ENST00000325971.12:ENST00000506447.5:ENST00000589596.5:ENST00000513432.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	48	2	1.81572	1.89941	1.9831	0.0626779	0.018491	0.175915	0.116694
chrX	71409845	71409945	7678682	0	+	0.41	(0.408,0.44]	chrX	786269	13	INTRON	INTRON	TAF1	ENSG00000147133.17	ENST00000683202.1:ENST00000373790.9:ENST00000423759.6:ENST00000683782.1:ENST00000683668.1:ENST00000276072.9:ENST00000463163.5:ENST00000373775.8:ENST00000485087.6:ENST00000437147.8:ENST00000683358.1:ENST00000682124.1:ENST00000461764.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	48	2	1.81572	1.89941	1.9831	0.0626779	0.018491	0.175915	0.116694
chr8	108241398	108241498	4023201	0	-	0.33	(0.32,0.35]	chr8	367680	14	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	EIF3E	ENSG00000104408.11	ENST00000678042.1:ENST00000678773.1:ENST00000677409.1:ENST00000676892.1:ENST00000523674.2:ENST00000677674.1:ENST00000220849.10:ENST00000678937.1:ENST00000677084.1:ENST00000676706.1:ENST00000518100.6:ENST00000677040.1:ENST00000676698.1:ENST00000522352.6:ENST00000521297.2:ENST00000677501.1:ENST00000519030.6:ENST00000519627.2:ENST00000518345.2:ENST00000522445.6:ENST00000678334.1:ENST00000678023.1:ENST00000678797.1:ENST00000677614.1:ENST00000676642.1:ENST00000677965.1:ENST00000678901.1:ENST00000678243.1:ENST00000676663.1:ENST00000679198.1:ENST00000521614.6:ENST00000678004.1:ENST00000678881.1:ENST00000677590.1:ENST00000677272.1:ENST00000676530.1:ENST00000677746.1:ENST00000676931.1:ENST00000677447.1:ENST00000676548.1:ENST00000676487.1:ENST00000521440.6:ENST00000518442.5:ENST00000522887.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	18	192	2	1.78588	1.8993799999999998	2.01288	0.00894349	0.00146408	0.0799922	0.0350624
chr4	2506296	2506396	1912206	0	+	0.49	(0.476,0.515]	chr4	191953	52	INTRON	INTRON	RNF4	ENSG00000063978.16	ENST00000541204.5:ENST00000502316.5:ENST00000509388.5:ENST00000507247.5:ENST00000314289.13:ENST00000511843.5:ENST00000509258.5:ENST00000513284.5:ENST00000511859.5:ENST00000513643.5:ENST00000506706.5:ENST00000511600.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	66	2	1.58842	1.8993349999999998	2.21025	0.0406588	0.00913757	0.161534	0.0812335
chr2	69940069	69940168	805763	0	+	0.343434	(0.32,0.35]	chr2	89939	19	UTR3	UTR3:EXON_MRNA:INTRON	MXD1	ENSG00000059728.11	ENST00000540449.5:ENST00000264444.7:ENST00000465446.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	18	193	2	1.74116	1.89933	2.0575	0.00900328	0.00144543	0.0803518	0.0348657
chr10	26843576	26843676	4584327	0	-	0.41	(0.408,0.44]	chr10	422409	34	INTRON	INTRON	ABI1	ENSG00000136754.18	ENST00000376138.7:ENST00000376166.5:ENST00000376160.5:ENST00000376139.6:ENST00000376142.6:ENST00000359188.8:ENST00000376170.8:ENST00000536334.5:ENST00000490841.6:ENST00000376137.8:ENST00000376140.4:ENST00000346832.10	protein_coding	protein_coding	protein_coding	protein_coding	5	41	2	1.43792	1.8993250000000002	2.36073	0.062843	0.0481658	0.196433	0.153019
chr7	129850196	129850296	3636932	0	-	0.44	(0.408,0.44]	chr7	338182	105	INTRON	INTRON	UBE2H	ENSG00000186591.13	ENST00000355621.8:ENST00000649897.1:ENST00000473814.6:ENST00000496698.5:ENST00000472396.5:ENST00000480245.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	41	2	1.43792	1.8993250000000002	2.36073	0.062843	0.0481658	0.196433	0.153019
chr10	22712735	22712835	4580486	0	-	0.38	(0.378,0.408]	chr10	422046	182	INTRON	INTRON	PIP4K2A	ENSG00000150867.14	ENST00000376573.9:ENST00000545335.5	protein_coding	protein_coding	protein_coding	protein_coding	7	68	2	1.89052	1.89932	1.90812	0.0264295	0.0148147	0.122506	0.106702
chr7	128008444	128008544	3405991	0	+	0.4	(0.378,0.408]	chr7	318193	3	SS5_PROX	SS5_PROX:INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000486037.1:ENST00000484767.5:ENST00000470723.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	68	2	1.89052	1.89932	1.90812	0.0264295	0.0148147	0.122506	0.106702
chr2	27621558	27621656	718332	0	+	0.438776	(0.408,0.44]	chr2	83418	2	UTR3	UTR3:EXON_MRNA	ZNF512	ENSG00000243943.10	ENST00000413371.6:ENST00000416005.6:ENST00000556601.5:ENST00000379717.5:ENST00000355467.6:ENST00000488055.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	11	102	2	1.73532	1.8992049999999998	2.06309	0.0194186	0.00294584	0.109149	0.0497776
chr17	31957065	31957164	6595878	0	+	0.464646	(0.44,0.476]	chr17	641554	90	INTRON	INTRON	SUZ12	ENSG00000178691.11	ENST00000322652.10:ENST00000580398.1	protein_coding	protein_coding	protein_coding	protein_coding	8	76	2	1.7965	1.899075	2.00165	0.0205549	0.0109867	0.122348	0.0873897
chr15	27217258	27217357	5984616	0	+	0.414141	(0.408,0.44]	chr15	569164	1901	INTRON	INTRON	GABRG3	ENSG00000182256.13	ENST00000615808.5:ENST00000555083.5	protein_coding	protein_coding	protein_coding	protein_coding	5	48	2	1.6306	1.8990300000000002	2.16746	0.0544158	0.024436	0.182272	0.12011
chr3	33566734	33566834	1652453	0	-	0.36	(0.35,0.378]	chr3	169501	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	CLASP2	ENSG00000163539.18	ENST00000399362.8:ENST00000682230.1:ENST00000468888.6:ENST00000359576.9:ENST00000650653.1:ENST00000480013.6:ENST00000461133.8:ENST00000635664.1	protein_coding	protein_coding	protein_coding	protein_coding	6	64	2	1.76773	1.899	2.03027	0.0373863	0.0185322	0.155878	0.108861
chr5	236130	236229	2312397	0	+	0.484848	(0.476,0.515]	chr5	223664	9	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	SDHA	ENSG00000073578.18	ENST00000504309.5:ENST00000505555.5:ENST00000510361.5:ENST00000264932.11:ENST00000514027.5:ENST00000515752.5:ENST00000512962.5:ENST00000511810.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	54	2	1.68907	1.898905	2.10874	0.0296007	0.0285608	0.142135	0.12666
chr11	66767732	66767832	4811577	0	+	0.42	(0.408,0.44]	chr11	447956	49	INTRON	INTRON	C11orf80	ENSG00000173715.18	ENST00000524551.5:ENST00000525908.6:ENST00000540737.7:ENST00000527634.5:ENST00000527368.5:ENST00000531400.6:ENST00000642265.1:ENST00000532565.6:ENST00000525449.6:ENST00000360962.10:ENST00000532727.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	80	2	1.71289	1.8988749999999999	2.08486	0.0145898	0.0135449	0.101363	0.0981689
chrX	121236818	121236918	7715558	0	+	0.58	(0.57,1]	chrX	789390	506	INTRON	INTRON	ENSG00000286163	ENSG00000286163.1	ENST00000651788.1	lncRNA	lncRNA	lncRNA	lncRNA	5	25	2	1.89351	1.898855	1.9042	0.0476976	0.0255126	0.153019	0.133676
chr9	137658620	137658719	4223872	0	+	0.545455	(0.515,0.57]	chr9	388170	72	INTRON	INTRON	EHMT1	ENSG00000181090.21	ENST00000462484.5:ENST00000371394.6:ENST00000630754.2:ENST00000460843.6:ENST00000626216.2:ENST00000629335.2:ENST00000637335.1:ENST00000636376.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	62	2	1.43219	1.898765	2.36534	0.0483322	0.00404547	0.153415	0.0578376
chr9	112295239	112295338	4317575	0	-	0.313131	(0.28,0.32]	chr9	397072	189	INTRON	INTRON	PTBP3	ENSG00000119314.16	ENST00000334318.10:ENST00000458258.5:ENST00000374257.6:ENST00000374255.6:ENST00000343327.6:ENST00000487997.1:ENST00000210227.4:ENST00000450374.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	84	2	1.79721	1.8987599999999998	2.00031	0.0408024	0.0110488	0.1451	0.0928193
chr15	50621981	50622080	6172624	0	-	0.40404	(0.378,0.408]	chr15	588330	18	INTRON	INTRON	TRPM7	ENSG00000092439.16	ENST00000646667.1:ENST00000560955.5:ENST00000560638.1	protein_coding	protein_coding	protein_coding	protein_coding	9	87	2	1.67662	1.8986649999999998	2.12071	0.0243251	0.00601933	0.12011	0.0700813
chr4	55418164	55418264	1960821	0	+	0.42	(0.408,0.44]	chr4	196575	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	TMEM165	ENSG00000134851.13	ENST00000381334.10:ENST00000506198.5:ENST00000508404.5:ENST00000514904.5:ENST00000508561.5:ENST00000608091.1:ENST00000509575.1:ENST00000506103.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	85	2	1.62122	1.898495	2.17577	0.0394247	0.00269594	0.143072	0.0479115
chr20	38071016	38071116	7269258	0	+	0.46	(0.44,0.476]	chr20	738717	5	INTRON	INTRON	RPRD1B	ENSG00000101413.12	ENST00000462548.6:ENST00000373433.9:ENST00000449186.2:ENST00000618318.1:ENST00000614670.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	75	2	1.60467	1.898485	2.1923	0.0411383	0.0043698	0.1451	0.0604104
chr16	84702179	84702277	6409921	0	+	0.459184	(0.44,0.476]	chr16	615255	17	INTRON	INTRON	USP10	ENSG00000103194.16	ENST00000562743.5:ENST00000540269.6:ENST00000563892.5:ENST00000562092.1:ENST00000569511.5:ENST00000219473.12:ENST00000564566.1:ENST00000570191.5:ENST00000563048.5:ENST00000562283.5:ENST00000563386.5:ENST00000569038.5:ENST00000570053.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	10	79	2	1.19808	1.89848	2.59888	0.0608628	0.00487719	0.17184	0.0640618
chr1	20774905	20775005	389739	0	-	0.51	(0.476,0.515]	chr1	46560	14	UTR5	UTR5:EXON_MRNA:INTRON	HP1BP3	ENSG00000127483.19	ENST00000438032.6:ENST00000312239.10:ENST00000375003.6:ENST00000419948.5:ENST00000424732.5:ENST00000417710.5	protein_coding	protein_coding	protein_coding	protein_coding	79	695	2	1.64019	1.898365	2.15654	0.00106042	1.0725e-4	0.0300133	0.00928106
chr16	21470602	21470694	6461050	0	-	0.391304	(0.378,0.408]	chr16	623321	3	INTRON	INTRON	SMG1P3	ENSG00000180747.15	ENST00000522480.5:ENST00000522841.6	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	4	41	2	1.8252	1.898315	1.97143	0.0619563	0.0398704	0.174514	0.161534
chr20	38086344	38086443	7269413	0	+	0.383838	(0.378,0.408]	chr20	738725	3	INTRON	INTRON	RPRD1B	ENSG00000101413.12	ENST00000462548.6:ENST00000373433.9:ENST00000449186.2:ENST00000618318.1:ENST00000614670.1:ENST00000471511.1:ENST00000484683.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	41	2	1.8252	1.898315	1.97143	0.0619563	0.0398704	0.174514	0.161534
chr1	15654940	15655038	33864	0	+	0.295918	(0.28,0.32]	chr1	4124	27	INTRON	INTRON	DDI2	ENSG00000197312.12	ENST00000480945.6:ENST00000320153.10:ENST00000548451.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	91	2	1.32455	1.89829	2.47203	0.0474504	0.0114089	0.169423	0.0886611
chr20	4011049	4011148	7309363	0	-	0.333333	(0.32,0.35]	chr20	744300	363	INTRON	INTRON	RNF24	ENSG00000101236.17	ENST00000336095.10:ENST00000358395.11:ENST00000545616.2	protein_coding	protein_coding	protein_coding	protein_coding	12	123	2	1.5319	1.898165	2.26443	0.018691	0.00481959	0.117523	0.060277
chr5	139310731	139310830	2499553	0	+	0.272727	[0,0.28]	chr5	238922	8	EXON_MRNA	EXON_MRNA:INTRON	MATR3	ENSG00000280987.4:ENSG00000015479.20	ENST00000509990.5:ENST00000506147.5:ENST00000512107.5:ENST00000361059.7:ENST00000394800.6:ENST00000502929.5:ENST00000504203.5:ENST00000509644.5:ENST00000512876.5:ENST00000513678.5:ENST00000513121.1:ENST00000504045.5:ENST00000504311.5:ENST00000502499.5:ENST00000510056.5:ENST00000511249.5:ENST00000394805.8:ENST00000507860.1:ENST00000509918.5:ENST00000503811.5:ENST00000511978.5:ENST00000618441.5:ENST00000514528.5:ENST00000504643.5:ENST00000515833.2:ENST00000514402.1:ENST00000505625.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	12	163	2	1.72372	1.89812	2.07252	0.0276803	0.00317496	0.123904	0.0518317
chr7	2265558	2265658	3467190	0	-	0.5	(0.476,0.515]	chr7	324206	7	INTRON	INTRON	SNX8	ENSG00000106266.11	ENST00000222990.8:ENST00000479689.1:ENST00000435060.5:ENST00000457286.5:ENST00000435336.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	85	2	1.38299	1.8980949999999999	2.4132	0.0361854	0.00417094	0.152746	0.0570595
chr4	32049089	32049189	1941939	0	+	0.38	(0.378,0.408]	chr4	194727	509	INTRON	INTRON	LINC02506	ENSG00000251129.3	ENST00000662669.1:ENST00000665582.2:ENST00000667252.2:ENST00000660373.2:ENST00000684849.1:ENST00000513211.2:ENST00000659613.1:ENST00000657576.1:ENST00000686730.1:ENST00000685407.1:ENST00000685455.1:ENST00000655951.1	lncRNA	lncRNA	lncRNA	lncRNA	6	62	2	1.65821	1.89809	2.13797	0.0506302	0.0124882	0.17547	0.0923444
chr7	107058964	107059063	3377308	0	+	0.525253	(0.515,0.57]	chr7	316240	134	INTRON	INTRON	PRKAR2B	ENSG00000005249.13	ENST00000265717.5	protein_coding	protein_coding	protein_coding	protein_coding	5	41	2	1.79136	1.89802	2.00468	0.0638444	0.0166344	0.177811	0.110511
chr7	158695740	158695840	3688708	0	-	0.55	(0.515,0.57]	chr7	342274	2	SS5_PROX	SS5_PROX:INTRON	NCAPG2	ENSG00000146918.20	ENST00000356309.8:ENST00000432615.5:ENST00000409423.5:ENST00000409339.3:ENST00000621338.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	41	2	1.79136	1.89802	2.00468	0.0638444	0.0166344	0.177811	0.110511
chr12	79925801	79925900	5376442	0	-	0.252525	[0,0.28]	chr12	512797	120	INTRON	INTRON	PPP1R12A	ENSG00000058272.19	ENST00000261207.9:ENST00000450142.7:ENST00000437004.6:ENST00000550107.5:ENST00000547330.5:ENST00000550510.5	protein_coding	protein_coding	protein_coding	protein_coding	7	89	2	1.62448	1.8979849999999998	2.17149	0.0308079	0.0302032	0.142761	0.13151
chr2	97163882	97163982	831364	0	+	0.38	(0.378,0.408]	chr2	93025	2	SS3_PROX	SS3_PROX:INTRON	ANKRD36	ENSG00000135976.21	ENST00000420699.9:ENST00000652721.1:ENST00000461153.7	protein_coding	protein_coding	protein_coding	protein_coding	10	98	2	1.82004	1.8979050000000002	1.97577	0.012605	0.00823929	0.0980801	0.0773252
chrX	110226560	110226659	7862036	0	-	0.424242	(0.408,0.44]	chrX	801505	16	INTRON	INTRON	AMMECR1	ENSG00000101935.12	ENST00000686065.1:ENST00000262844.10:ENST00000372059.6:ENST00000372057.1:ENST00000680410.1:ENST00000473662.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	40	2	1.85305	1.89789	1.94273	0.0543543	0.0456237	0.182243	0.149888
chr9	92252173	92252269	4286904	0	-	0.322917	(0.32,0.35]	chr9	394148	4	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	IARS1	ENSG00000196305.19	ENST00000375643.7:ENST00000443024.7:ENST00000447699.7:ENST00000683537.1:ENST00000684726.1:ENST00000683192.1:ENST00000683565.1:ENST00000682756.1:ENST00000684542.1:ENST00000683793.1:ENST00000683817.1:ENST00000682141.1:ENST00000682893.1:ENST00000684557.1:ENST00000498025.2:ENST00000682156.1:ENST00000683017.1:ENST00000682521.1:ENST00000627121.3:ENST00000683469.1:ENST00000683495.1:ENST00000682578.1:ENST00000682533.1:ENST00000472894.2:ENST00000684757.1:ENST00000684445.1:ENST00000683376.1:ENST00000683679.1:ENST00000683119.1:ENST00000684594.1:ENST00000684267.1:ENST00000683477.1:ENST00000684328.1:ENST00000467876.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	26	270	2	1.86877	1.897875	1.92698	0.00352445	0.00135008	0.0527259	0.0338354
chr18	2728056	2728156	6865615	0	+	0.26	[0,0.28]	chr18	680062	2	SS3_PROX	SS3_PROX:INTRON	SMCHD1	ENSG00000101596.17	ENST00000320876.11:ENST00000688342.1:ENST00000693213.1:ENST00000577880.5:ENST00000584897.5:ENST00000583441.2:ENST00000690757.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	119	2	1.25228	1.89785	2.54342	0.0491962	0.0105954	0.174117	0.0861859
chr16	22508490	22508588	6322694	0	+	0.520408	(0.515,0.57]	chr16	605452	7	INTRON	INTRON	NPIPB5	ENSG00000243716.11	ENST00000415654.5:ENST00000415833.6:ENST00000546168.5:ENST00000543407.5:ENST00000356156.7:ENST00000541154.5:ENST00000545375.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	23	177	2	1.85829	1.89784	1.93739	0.0019874	0.00122921	0.0404772	0.0325908
chr1	1762734	1762833	361578	0	-	0.343434	(0.32,0.35]	chr1	42211	3	INTRON	INTRON	NADK	ENSG00000008130.15	ENST00000378625.5:ENST00000341991.7:ENST00000341426.9:ENST00000492845.6:ENST00000492768.5:ENST00000460602.5:ENST00000464373.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	67	2	1.64769	1.8978100000000002	2.14793	0.0578603	0.0110079	0.167723	0.0927187
chr18	36145612	36145690	6891589	0	+	0.269231	[0,0.28]	chr18	683014	2	SS3_PROX	SS3_PROX:INTRON	ELP2	ENSG00000134759.14	ENST00000351393.10:ENST00000442325.6:ENST00000358232.11:ENST00000423854.6:ENST00000539560.5:ENST00000350494.10:ENST00000542824.5:ENST00000540799.1:ENST00000535093.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	97	2	1.45721	1.89773	2.33825	0.0401939	0.0195228	0.161534	0.109483
chr4	126618890	126618990	2236898	0	-	0.39	(0.378,0.408]	chr4	219023	1534	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	4	37	2	1.65821	1.89762	2.13703	0.0797592	0.0506302	0.19979	0.17547
chr7	107445826	107445926	3611843	0	-	0.38	(0.378,0.408]	chr7	336694	328	INTRON	INTRON	COG5	ENSG00000164597.15	ENST00000297135.9:ENST00000347053.8:ENST00000393603.7:ENST00000484237.5:ENST00000475638.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	37	2	1.65821	1.89762	2.13703	0.0797592	0.0506302	0.19979	0.17547
chr16	16587986	16588086	6311742	0	+	0.4	(0.378,0.408]	chr16	604098	880	INTRON	INTRON	ENSG00000260126	ENSG00000260126.2	ENST00000567465.2	lncRNA	lncRNA	lncRNA	lncRNA	6	60	2	1.75204	1.89748	2.04292	0.0326035	0.0268575	0.145164	0.123442
chr18	3012129	3012220	6945091	0	-	0.384615	(0.378,0.408]	chr18	686844	3	INTRON	INTRON	LPIN2	ENSG00000101577.10	ENST00000677752.1	protein_coding	protein_coding	protein_coding	protein_coding	5	50	2	1.68393	1.8974799999999998	2.11103	0.0503034	0.0266911	0.156383	0.134419
chr4	38699241	38699340	1948943	0	+	0.282828	(0.28,0.32]	chr4	195100	21	UTR3	UTR3:EXON_MRNA	KLF3	ENSG00000109787.13	ENST00000261438.10	protein_coding	protein_coding	protein_coding	protein_coding	6	75	2	1.76378	1.8974199999999999	2.03106	0.0395495	0.0208123	0.161534	0.111549
chr1	155547675	155547775	562745	0	-	0.47	(0.44,0.476]	chr1	67117	257	INTRON	INTRON	ASH1L	ENSG00000116539.14	ENST00000676814.1:ENST00000392403.8:ENST00000368346.7:ENST00000677213.1:ENST00000678117.1:ENST00000679097.1:ENST00000679333.1:ENST00000679133.1:ENST00000548830.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	66	2	1.76195	1.8973049999999998	2.03266	0.0252608	0.0155853	0.12011	0.109411
chr2	68241601	68241700	1146415	0	-	0.484848	(0.476,0.515]	chr2	122396	241	INTRON	INTRON	PPP3R1	ENSG00000221823.11	ENST00000234310.8:ENST00000409752.5:ENST00000409377.1	protein_coding	protein_coding	protein_coding	protein_coding	5	48	2	1.72558	1.8972799999999999	2.06898	0.0767648	0.0137491	0.196164	0.10247
chr2	174362233	174362333	1271010	0	-	0.5	(0.476,0.515]	chr2	134338	33	INTRON	INTRON	CIR1	ENSG00000138433.16	ENST00000342016.8:ENST00000377973.4	protein_coding	protein_coding	protein_coding	protein_coding	5	48	2	1.72558	1.8972799999999999	2.06898	0.0767648	0.0137491	0.196164	0.10247
chr7	2373493	2373587	3269825	0	+	0.489362	(0.476,0.515]	chr7	303855	5	EXON_MRNA	EXON_MRNA:INTRON	EIF3B	ENSG00000106263.19	ENST00000360876.9:ENST00000397011.2:ENST00000475415.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	48	2	1.72558	1.8972799999999999	2.06898	0.0767648	0.0137491	0.196164	0.10247
chr20	63286218	63286291	7299781	0	+	0.630137	(0.57,1]	chr20	742810	1	EXON_MRNA	EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ARFGAP1	ENSG00000101199.13	ENST00000519273.6:ENST00000519604.5:ENST00000547204.5:ENST00000549047.5:ENST00000370283.9:ENST00000523460.5:ENST00000520485.5:ENST00000370275.8:ENST00000518601.6:ENST00000353546.7:ENST00000518794.6:ENST00000468975.6:ENST00000518691.1:ENST00000518618.2:ENST00000395285.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	13	61	2	1.79978	1.89718	1.99458	0.0199509	0.00117456	0.109608	0.0316581
chr5	150027517	150027617	2518937	0	+	0.41	(0.408,0.44]	chr5	240803	4	SS5_PROX	SS5_PROX:INTRON	HMGXB3	ENSG00000113716.13	ENST00000613459.4:ENST00000503427.5:ENST00000502717.6:ENST00000514469.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	20	179	2	1.70517	1.8971650000000002	2.08916	0.00411851	0.0018605	0.0586197	0.0390264
chr12	122490261	122490361	5441882	0	-	0.46	(0.44,0.476]	chr12	520500	4	SS5_PROX	SS5_PROX:INTRON	ZCCHC8	ENSG00000033030.15	ENST00000672018.1:ENST00000633063.3:ENST00000543897.5:ENST00000536306.5:ENST00000536663.5:ENST00000540586.1	protein_coding	protein_coding	protein_coding	protein_coding	6	57	2	1.81283	1.897145	1.98146	0.0343005	0.0186013	0.135641	0.117264
chrX	153759095	153759195	7911287	0	-	0.45	(0.44,0.476]	chrX	805122	202	INTRON	INTRON	PLXNB3-AS1	ENSG00000232725.1	ENST00000434284.1	lncRNA	lncRNA	lncRNA	lncRNA	6	57	2	1.81283	1.897145	1.98146	0.0343005	0.0186013	0.135641	0.117264
chr4	103183488	103183588	2215456	0	-	0.36	(0.35,0.378]	chr4	217156	2	SS3_PROX	SS3_PROX:INTRON	CENPE	ENSG00000138778.14	ENST00000380026.8:ENST00000265148.9	protein_coding	protein_coding	protein_coding	protein_coding	5	52	2	1.81767	1.897065	1.97646	0.0640429	0.0193942	0.177882	0.119831
chr16	84707108	84707205	6409972	0	+	0.402062	(0.378,0.408]	chr16	615262	19	INTRON	INTRON	USP10	ENSG00000103194.16	ENST00000562743.5:ENST00000540269.6:ENST00000563892.5:ENST00000562092.1:ENST00000569511.5:ENST00000219473.12:ENST00000564566.1:ENST00000570191.5:ENST00000563048.5:ENST00000562283.5:ENST00000563386.5:ENST00000569038.5:ENST00000570053.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	51	2	1.82258	1.897005	1.97143	0.0398704	0.0341279	0.161534	0.135102
chr2	177220389	177220488	925999	0	+	0.292929	(0.28,0.32]	chr2	101764	12	UTR3	UTR3:EXON_MRNA:INTRON	HNRNPA3	ENSG00000170144.21	ENST00000679159.1:ENST00000678111.1:ENST00000678421.1:ENST00000677863.1:ENST00000676681.1:ENST00000676629.1:ENST00000677337.1:ENST00000676488.1:ENST00000677043.1:ENST00000676874.1:ENST00000676762.1:ENST00000411529.6:ENST00000676736.1:ENST00000483137.2:ENST00000677508.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	22	258	2	1.7796400000000001	1.8969850000000001	2.01433	0.00384895	0.00287784	0.0562562	0.0475802
chr5	28817346	28817446	2329923	0	+	0.39	(0.378,0.408]	chr5	225135	68	INTRON	INTRON	LINC02109	ENSG00000259786.7	ENST00000658190.1	lncRNA	lncRNA	lncRNA	lncRNA	11	106	2	1.76983	1.89695	2.02407	0.0109303	0.00680892	0.0924702	0.0711884
chr16	23885581	23885681	6324256	0	+	0.52	(0.515,0.57]	chr16	605697	164	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000645517.1:ENST00000498739.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	19	138	2	1.72131	1.8968749999999999	2.07244	0.00293638	0.0028851	0.0494641	0.0483234
chr16	10457119	10457219	6286997	0	+	0.32	(0.28,0.32]	chr16	602010	4	SS3_PROX	SS3_PROX:INTRON	ATF7IP2	ENSG00000166669.14	ENST00000396559.5:ENST00000396560.6:ENST00000543967.5:ENST00000562102.6:ENST00000535850.5:ENST00000568027.5:ENST00000324570.9:ENST00000356427.2:ENST00000565616.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	85	2	1.64429	1.896855	2.14942	0.0365539	0.0143412	0.153932	0.0966737
chr3	194453205	194453305	1890854	0	-	0.43	(0.408,0.44]	chr3	189203	1	SS5_PROX	SS5_PROX:INTRON	ATP13A3	ENSG00000133657.17	ENST00000687055.1:ENST00000645538.1:ENST00000645319.2:ENST00000690810.1:ENST00000642744.2:ENST00000439040.6:ENST00000485194.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	40	367	2	1.50429	1.8968349999999998	2.28938	0.00787436	4.17005e-5	0.076155	0.00523306
chr15	92888714	92888814	6103566	0	+	0.31	(0.28,0.32]	chr15	581368	4	SS5_PROX	SS5_PROX:INTRON	CHASERR:ENSG00000279765	ENSG00000272888.8:ENSG00000279765.3	ENST00000653163.1:ENST00000557682.6:ENST00000556895.5:ENST00000554894.5:ENST00000629685.2:ENST00000554133.5:ENST00000630790.1:ENST00000555520.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	8	95	2	1.76048	1.8967749999999999	2.03307	0.0450149	0.0062039	0.149888	0.0716199
chr1	506498	506597	355627	0	-	0.343434	(0.32,0.35]	chr1	41008	10	INTRON	INTRON	ENSG00000237094	ENSG00000237094.12	ENST00000641303.1:ENST00000641063.1:ENST00000641049.1:ENST00000642124.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	9	98	2	1.64095	1.89669	2.15243	0.0295558	0.0057293	0.128413	0.0681402
chr1	202374920	202375020	293021	0	+	0.45	(0.44,0.476]	chr1	33758	254	INTRON	INTRON	PPP1R12B	ENSG00000077157.22	ENST00000391959.5:ENST00000608999.6:ENST00000480184.5:ENST00000356764.6:ENST00000476364.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	48	2	1.71574	1.8966699999999999	2.0776	0.045256	0.0292951	0.149888	0.141862
chr5	181054614	181054700	2562984	0	+	0.465116	(0.44,0.476]	chr5	245208	4	SS5_PROX	SS5_PROX:INTRON	BTNL9	ENSG00000165810.17	ENST00000376841.6:ENST00000491209.5:ENST00000327705.14:ENST00000511056.1:ENST00000506782.1:ENST00000512570.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	48	2	1.71574	1.8966699999999999	2.0776	0.045256	0.0292951	0.149888	0.141862
chr19	11934172	11934272	7019844	0	+	0.35	(0.32,0.35]	chr19	697884	85	INTRON	INTRON	ZNF700	ENSG00000196757.8	ENST00000622593.4:ENST00000254321.10	protein_coding	protein_coding	protein_coding	protein_coding	10	109	2	1.79633	1.89659	1.99685	0.0177594	0.00667915	0.105629	0.0738715
chr11	5456198	5456298	4897783	0	-	0.42	(0.408,0.44]	chr11	459193	148	INTRON	INTRON	HBG2:ENSG00000239920:HBE1:OR51B5	ENSG00000196565.15:ENSG00000239920.2:ENSG00000213931.7:ENSG00000167355.8	ENST00000380252.6:ENST00000380259.7:ENST00000292896.3:ENST00000380237.5:ENST00000420726.6:ENST00000420465.6:ENST00000415970.6:ENST00000418729.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:nonsense_mediated_decay:processed_transcript	14	125	2	1.45004	1.8965	2.34296	0.020059	0.00162852	0.121028	0.0368181
chr7	22668929	22669029	3500068	0	-	0.37	(0.35,0.378]	chr7	326683	35	INTRON	INTRON	STEAP1B	ENSG00000105889.16	ENST00000650428.1	protein_coding	processed_transcript	protein_coding	processed_transcript	6	63	2	1.87586	1.89646	1.91706	0.0268864	0.026412	0.135275	0.122506
chr17	42319455	42319555	6772304	0	-	0.49	(0.476,0.515]	chr17	667003	2	SS5_PROX	SS5_PROX:INTRON	STAT3	ENSG00000168610.16	ENST00000264657.10:ENST00000678044.1:ENST00000678906.1:ENST00000678960.1:ENST00000679014.1:ENST00000678043.1:ENST00000677442.1:ENST00000677723.1:ENST00000679166.1:ENST00000678792.1:ENST00000678764.1:ENST00000678048.1:ENST00000678674.1:ENST00000678445.1:ENST00000678913.1:ENST00000677421.1:ENST00000679231.1:ENST00000677030.1:ENST00000678827.1:ENST00000679185.1:ENST00000677820.1:ENST00000678905.1:ENST00000677479.1:ENST00000676636.1:ENST00000678572.1:ENST00000677271.1:ENST00000677152.1:ENST00000677603.1:ENST00000677002.1:ENST00000491272.2:ENST00000677500.1:ENST00000585517.5:ENST00000678535.1:ENST00000677308.1:ENST00000389272.7:ENST00000588969.5:ENST00000677763.1:ENST00000404395.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	75	2	1.54629	1.896415	2.24654	0.0484352	0.00346427	0.153635	0.0539802
chr10	101808598	101808696	4680876	0	-	0.346939	(0.32,0.35]	chr10	432006	3	INTRON	INTRON	OGA	ENSG00000198408.14	ENST00000439817.5:ENST00000361464.8:ENST00000357797.9:ENST00000370094.7:ENST00000429860.1	protein_coding	protein_coding	protein_coding	protein_coding	11	116	2	1.89094	1.896295	1.90165	0.0185636	0.00508454	0.108861	0.0646039
chr11	9281444	9281543	4909093	0	-	0.30303	(0.28,0.32]	chr11	460125	9	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	TMEM41B	ENSG00000166471.11	ENST00000524543.5:ENST00000528080.6:ENST00000299596.8:ENST00000611268.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	18	143	2	1.10633	1.896175	2.68602	0.0450271	0.0055712	0.163255	0.0649112
chr19	48961183	48961270	7088087	0	+	0.471264	(0.44,0.476]	chr19	709409	2	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	BAX	ENSG00000087088.21	ENST00000502487.5:ENST00000345358.12:ENST00000513545.5:ENST00000293288.12:ENST00000506183.5:ENST00000354470.7:ENST00000356483.8:ENST00000415969.6:ENST00000513217.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	16	135	2	1.4678	1.896155	2.32451	0.0150988	0.00241361	0.0994339	0.0453973
chr7	75466706	75466806	3558734	0	-	0.33	(0.32,0.35]	chr7	331545	241	INTRON	INTRON	POM121C	ENSG00000272391.6	ENST00000615331.5:ENST00000398379.2	protein_coding	protein_coding	protein_coding	protein_coding	8	90	2	1.38564	1.89614	2.40664	0.0793006	0.00189533	0.199711	0.0402736
chr10	68760308	68760407	4442678	0	+	0.363636	(0.35,0.378]	chr10	409678	5	INTRON	INTRON	CCAR1	ENSG00000060339.14	ENST00000630771.2:ENST00000543719.5:ENST00000541012.5:ENST00000265872.11:ENST00000539539.5:ENST00000543229.5:ENST00000536012.5:ENST00000543225.5:ENST00000540210.5:ENST00000479143.2:ENST00000543706.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	80	2	1.55918	1.896135	2.23309	0.0326427	0.00930277	0.145164	0.0817766
chr2	186503631	186503731	942994	0	+	0.44	(0.408,0.44]	chr2	103270	2	SS3_PROX	SS3_PROX:INTRON	ZC3H15	ENSG00000065548.18	ENST00000421536.5:ENST00000337859.11:ENST00000481101.5:ENST00000468120.5:ENST00000496289.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	73	2	1.78592	1.896105	2.00629	0.0189661	0.0142075	0.108861	0.103638
chr9	5009881	5009981	4096069	0	+	0.44	(0.408,0.44]	chr9	373235	235	INTRON	INTRON	JAK2	ENSG00000096968.14	ENST00000636127.1:ENST00000476574.5:ENST00000381652.4	protein_coding	protein_coding	protein_coding	protein_coding	8	73	2	1.78592	1.896105	2.00629	0.0189661	0.0142075	0.108861	0.103638
chr3	52482213	52482313	1428542	0	+	0.62	(0.57,1]	chr3	150891	4	INTRON	INTRON	NISCH	ENSG00000010322.16	ENST00000479054.5:ENST00000345716.9:ENST00000489895.5:ENST00000485765.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	25	2	1.74185	1.896055	2.05026	0.0401765	0.0321326	0.145026	0.143911
chr6	4018430	4018528	3048140	0	-	0.673469	(0.57,1]	chr6	283662	7	EXON_LNCRNA	EXON_LNCRNA	ENSG00000288904	ENSG00000288904.1	ENST00000687812.1	lncRNA	lncRNA	lncRNA	lncRNA	5	25	2	1.74185	1.896055	2.05026	0.0401765	0.0321326	0.145026	0.143911
chr6	20410829	20410929	2827537	0	+	0.59	(0.57,1]	chr6	265575	66	INTRON	INTRON	E2F3	ENSG00000112242.16	ENST00000346618.8:ENST00000535432.2	protein_coding	protein_coding	protein_coding	protein_coding	5	25	2	1.74185	1.896055	2.05026	0.0401765	0.0321326	0.145026	0.143911
chr14	102599223	102599323	5822599	0	+	0.42	(0.408,0.44]	chr14	552490	55	INTRON	INTRON	RCOR1	ENSG00000089902.10	ENST00000262241.7	protein_coding	protein_coding	protein_coding	protein_coding	8	73	2	1.66945	1.8960249999999998	2.1226	0.0218479	0.012812	0.123836	0.0926667
chr6	31754424	31754522	2843639	0	+	0.428571	(0.408,0.44]	chr6	267818	4	INTRON	INTRON	MSH5:MSH5-SAPCD1	ENSG00000204410.16:ENSG00000255152.8	ENST00000375755.8:ENST00000375750.9:ENST00000650702.1:ENST00000493662.6:ENST00000375703.7:ENST00000375740.7:ENST00000423982.6:ENST00000463144.5:ENST00000450148.5:ENST00000468602.5:ENST00000468136.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	18	140	2	1.05618	1.89602	2.73586	0.0595013	2.9686e-4	0.16883600000000001	0.0154293
chr22	19509091	19509191	7477140	0	+	0.33	(0.32,0.35]	chr22	762457	4	SS5_PROX	SS5_PROX:INTRON	CDC45	ENSG00000093009.11	ENST00000407835.6:ENST00000437685.6:ENST00000438587.6:ENST00000672837.1:ENST00000263201.7:ENST00000404724.7:ENST00000471470.1:ENST00000671972.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	114	2	1.84365	1.8960050000000002	1.94836	0.0184323	0.00752786	0.116493	0.074841
chr9	137456310	137456410	4377335	0	-	0.59	(0.57,1]	chr9	403601	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	NSMF	ENSG00000165802.23	ENST00000371475.9:ENST00000371473.7:ENST00000371474.7:ENST00000437259.5:ENST00000371472.6:ENST00000265663.12	protein_coding	protein_coding	protein_coding	protein_coding	7	34	2	1.62421	1.896	2.16779	0.0376752	0.00900694	0.156361	0.0803518
chr4	126471839	126471939	2235427	0	-	0.29	(0.28,0.32]	chr4	219023	63	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	8	86	2	1.6518	1.8959099999999998	2.14002	0.0304107	0.0193817	0.130461	0.119831
chrX	44894886	44894986	7648819	0	+	0.52	(0.515,0.57]	chrX	782726	205	INTRON	INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000675440.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000621147.5:ENST00000475233.1:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	62	2	1.82113	1.89574	1.97035	0.0195832	0.0118311	0.109483	0.0962115
chr6	43777863	43777962	2872139	0	+	0.585859	(0.57,1]	chr6	272356	3	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	VEGFA	ENSG00000112715.26	ENST00000476772.5:ENST00000672860.3:ENST00000372067.8:ENST00000425836.8:ENST00000372064.9:ENST00000482630.7:ENST00000372055.9:ENST00000413642.8:ENST00000324450.11:ENST00000417285.7:ENST00000372077.8:ENST00000519767.5:ENST00000520948.5:ENST00000518538.5:ENST00000523950.5:ENST00000523873.5:ENST00000518824.5:ENST00000457104.6:ENST00000518689.5:ENST00000523125.5:ENST00000230480.10:ENST00000480614.1:ENST00000520265.1:ENST00000497139.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	23	98	2	1.58097	1.8956849999999998	2.2104	0.00347626	6.74507e-4	0.0540643	0.0237705
chr7	156718323	156718422	3686243	0	-	0.444444	(0.44,0.476]	chr7	341983	298	INTRON	INTRON	LMBR1	ENSG00000105983.23	ENST00000353442.10:ENST00000448926.5:ENST00000415428.5:ENST00000454132.5:ENST00000434503.5:ENST00000461603.5:ENST00000486837.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	62	2	1.45853	1.8956250000000001	2.33272	0.0470887	0.0129984	0.152251	0.0991656
chr7	157343155	157343255	3455362	0	+	0.48	(0.476,0.515]	chr7	323052	27	INTRON	INTRON	DNAJB6	ENSG00000105993.15	ENST00000441561.5:ENST00000429029.6:ENST00000262177.9:ENST00000486083.6:ENST00000417758.5:ENST00000459889.5:ENST00000443280.5:ENST00000488001.5:ENST00000441291.5:ENST00000437030.5:ENST00000412557.5:ENST00000453383.5:ENST00000439402.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	57	2	1.58335	1.89562	2.20789	0.0640461	0.00820497	0.177882	0.081115
chr1	108954572	108954672	519089	0	-	0.43	(0.408,0.44]	chr1	60927	1	SS3_PROX	SS3_PROX:INTRON	CLCC1	ENSG00000121940.17	ENST00000690509.1:ENST00000687328.1:ENST00000685014.1:ENST00000685540.1:ENST00000686576.1:ENST00000688070.1:ENST00000691513.1:ENST00000686821.1:ENST00000692511.1:ENST00000689479.1:ENST00000687646.1:ENST00000687998.1:ENST00000687226.1:ENST00000693336.1:ENST00000689991.1:ENST00000687591.1:ENST00000691777.1:ENST00000690756.1:ENST00000688778.1:ENST00000685104.1:ENST00000689103.1:ENST00000687734.1:ENST00000686434.1:ENST00000685497.1:ENST00000691342.1:ENST00000686776.1:ENST00000692342.1:ENST00000689351.1:ENST00000692584.1:ENST00000692775.1:ENST00000687134.1:ENST00000675018.1:ENST00000690781.1:ENST00000691556.1:ENST00000689189.1:ENST00000687099.1:ENST00000685791.1:ENST00000687865.1:ENST00000687449.1:ENST00000688285.1:ENST00000369968.7:ENST00000674992.1:ENST00000675001.1:ENST00000369969.7:ENST00000356970.6:ENST00000688610.1:ENST00000675128.1:ENST00000693089.1:ENST00000675571.1:ENST00000675650.1:ENST00000369970.8:ENST00000674561.2:ENST00000675654.1:ENST00000675790.1:ENST00000675584.1:ENST00000692795.1:ENST00000691731.1:ENST00000689359.1:ENST00000676392.2:ENST00000676391.2:ENST00000676454.1:ENST00000674849.1:ENST00000675956.1:ENST00000302500.5:ENST00000675508.1:ENST00000688168.1:ENST00000693673.1:ENST00000692404.1:ENST00000686078.1:ENST00000690874.1:ENST00000692732.1:ENST00000685628.1:ENST00000676306.1:ENST00000676059.2:ENST00000674527.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	15	130	2	1.59411	1.8955349999999997	2.19696	0.00937669	0.00315257	0.0859966	0.0501351
chr3	119454725	119454824	1791895	0	-	0.424242	(0.408,0.44]	chr3	179947	18	INTRON	INTRON	TMEM39A	ENSG00000176142.13	ENST00000319172.10:ENST00000438581.6:ENST00000491685.5:ENST00000486159.5:ENST00000486235.5:ENST00000468676.5:ENST00000490099.5:ENST00000497993.5:ENST00000482162.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	13	104	2	1.52666	1.89553	2.2644	0.0125782	0.00768371	0.0980703	0.0753803
chr3	37277688	37277787	1396100	0	+	0.333333	(0.32,0.35]	chr3	146333	12	INTRON	INTRON	GOLGA4	ENSG00000144674.17	ENST00000435830.6:ENST00000444882.5:ENST00000356847.8:ENST00000450863.6:ENST00000361924.7:ENST00000429018.5:ENST00000431105.1:ENST00000419177.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	14	114	2	1.33073	1.8955	2.46027	0.0242372	0.0108973	0.130624	0.0873034
chr5	179723476	179723567	2560953	0	+	0.362637	(0.35,0.378]	chr5	244938	6	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CANX	ENSG00000127022.16	ENST00000681674.1:ENST00000681712.1:ENST00000681903.1:ENST00000680406.1:ENST00000502296.6:ENST00000504734.5:ENST00000452673.6:ENST00000679719.1:ENST00000679523.1:ENST00000679395.1:ENST00000681504.1:ENST00000679642.1:ENST00000681894.1:ENST00000680504.1:ENST00000681265.1:ENST00000680894.1:ENST00000680812.1:ENST00000680614.1:ENST00000680985.1:ENST00000680837.1:ENST00000680827.1:ENST00000681576.1:ENST00000680984.1:ENST00000680042.1:ENST00000681762.1:ENST00000681476.1:ENST00000681072.1:ENST00000247461.9:ENST00000513246.6:ENST00000680618.1:ENST00000502673.6:ENST00000680092.1:ENST00000506654.6:ENST00000514032.5:ENST00000681733.1:ENST00000679471.1:ENST00000679527.1:ENST00000680006.1:ENST00000681398.1:ENST00000681431.1:ENST00000680013.1:ENST00000681076.1:ENST00000681168.1:ENST00000509563.2:ENST00000681342.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	45	2	1.54563	1.8954900000000001	2.24535	0.0647516	0.046845	0.179192	0.167716
chr8	129350793	129350892	4058768	0	-	0.282828	(0.28,0.32]	chr8	369545	57	INTRON	INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000657400.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1	lncRNA	lncRNA	lncRNA	lncRNA	6	70	2	1.40698	1.895445	2.38391	0.0778529	0.0122525	0.196685	0.0969406
chr5	139312111	139312210	2499567	0	+	0.373737	(0.35,0.378]	chr5	238922	22	EXON_MRNA	EXON_MRNA:INTRON	MATR3	ENSG00000280987.4:ENSG00000015479.20	ENST00000509990.5:ENST00000506147.5:ENST00000512107.5:ENST00000361059.7:ENST00000394800.6:ENST00000502929.5:ENST00000504203.5:ENST00000509644.5:ENST00000512876.5:ENST00000513678.5:ENST00000513121.1:ENST00000504045.5:ENST00000504311.5:ENST00000502499.5:ENST00000510056.5:ENST00000511249.5:ENST00000394805.8:ENST00000507860.1:ENST00000509918.5:ENST00000503811.5:ENST00000511978.5:ENST00000618441.5:ENST00000514528.5:ENST00000504643.5:ENST00000515833.2:ENST00000514402.1:ENST00000505625.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	22	177	2	1.44364	1.8954300000000002	2.34722	0.00893003	0.00312988	0.0849778	0.0499376
chr2	69917505	69917603	805531	0	+	0.295918	(0.28,0.32]	chr2	89914	9	INTRON	INTRON	MXD1	ENSG00000059728.11	ENST00000435990.5:ENST00000540449.5:ENST00000264444.7:ENST00000409442.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	80	2	1.87474	1.895425	1.91611	0.0539102	0.0115687	0.164153	0.0962115
chr7	74460266	74460366	3333719	0	+	0.47	(0.44,0.476]	chr7	310175	57	INTRON	INTRON	GTF2IRD1	ENSG00000006704.11	ENST00000265755.7:ENST00000424337.7:ENST00000455841.6	protein_coding	protein_coding	protein_coding	protein_coding	6	54	2	1.65297	1.8953799999999998	2.13779	0.0331814	0.0264596	0.145918	0.122506
chr9	37205836	37205936	4118515	0	+	0.31	(0.28,0.32]	chr9	375389	189	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000461038.5:ENST00000488607.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	96	2	1.75919	1.895355	2.03152	0.0300418	0.00983556	0.129138	0.0877296
chr10	86515178	86515278	4659299	0	-	0.52	(0.515,0.57]	chr10	429294	141	INTRON	INTRON	WAPL	ENSG00000062650.20	ENST00000298767.10	protein_coding	protein_coding	protein_coding	protein_coding	9	71	2	1.75695	1.895315	2.03368	0.016156	0.00803127	0.101453	0.0803474
chr19	18576969	18577066	7033270	0	+	0.412371	(0.408,0.44]	chr19	700945	19	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	UBA52	ENSG00000221983.8	ENST00000442744.7:ENST00000599595.5	protein_coding	protein_coding	protein_coding	protein_coding	12	113	2	1.46762	1.8952999999999998	2.32298	0.0267854	0.00178682	0.134871	0.037989
chr1	9614378	9614478	17867	0	+	0.5	(0.476,0.515]	chr1	1678	14	UTR3	UTR3:EXON_MRNA	TMEM201	ENSG00000188807.13	ENST00000340381.11:ENST00000416541.5	protein_coding	protein_coding	protein_coding	protein_coding	10	85	2	1.19752	1.8952799999999999	2.59304	0.0689479	0.00158794	0.184298	0.0367961
chr2	199401532	199401632	1308685	0	-	0.3	(0.28,0.32]	chr2	136882	33	INTRON	INTRON	SATB2	ENSG00000119042.17	ENST00000614512.4:ENST00000417098.6:ENST00000260926.9:ENST00000443023.5:ENST00000428695.5:ENST00000457245.5:ENST00000484124.1:ENST00000440919.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	113	2	1.76061	1.89526	2.02991	0.0253826	0.00853977	0.133676	0.0780162
chr16	84738922	84739020	6410301	0	+	0.510204	(0.476,0.515]	chr16	615290	51	INTRON	INTRON	USP10	ENSG00000103194.16	ENST00000562743.5:ENST00000540269.6:ENST00000563892.5:ENST00000562092.1:ENST00000219473.12:ENST00000570191.5:ENST00000563048.5:ENST00000562283.5:ENST00000563386.5:ENST00000569038.5:ENST00000570053.1:ENST00000566512.1:ENST00000563023.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	39	2	1.72558	1.8952449999999998	2.06491	0.0767648	0.0304733	0.196164	0.143385
chr7	75467206	75467306	3558739	0	-	0.48	(0.476,0.515]	chr7	331545	246	INTRON	INTRON	POM121C	ENSG00000272391.6	ENST00000615331.5:ENST00000398379.2	protein_coding	protein_coding	protein_coding	protein_coding	4	39	2	1.72558	1.8952449999999998	2.06491	0.0767648	0.0304733	0.196164	0.143385
chr16	89480150	89480250	6543498	0	-	0.51	(0.476,0.515]	chr16	634281	485	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	39	2	1.79693	1.8951699999999998	1.99341	0.0649782	0.037389	0.179417	0.155878
chr7	112780630	112780729	3624306	0	-	0.545455	(0.515,0.57]	chr7	337160	21	INTRON	INTRON	TMEM168	ENSG00000146802.13	ENST00000312814.11:ENST00000454074.5:ENST00000447395.5:ENST00000418785.5:ENST00000449743.1:ENST00000441474.1	protein_coding	protein_coding	protein_coding	protein_coding	14	109	2	1.7112	1.89513	2.07906	0.0139408	0.00118955	0.095788	0.031662
chr9	130801053	130801153	4214735	0	+	0.5	(0.476,0.515]	chr9	386427	862	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000393293.4	protein_coding	protein_coding	protein_coding	protein_coding	5	47	2	1.86014	1.89499	1.92984	0.0466474	0.0277606	0.151522	0.137011
chr5	138574869	138574968	2732914	0	-	0.444444	(0.44,0.476]	chr5	257505	2	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	HSPA9	ENSG00000113013.16	ENST00000677693.1:ENST00000677064.1:ENST00000678300.1:ENST00000677425.1:ENST00000649578.2:ENST00000677988.1:ENST00000297185.9:ENST00000677527.1:ENST00000678794.1:ENST00000677553.1:ENST00000678384.1:ENST00000678051.1:ENST00000677066.1:ENST00000649692.2:ENST00000678551.1:ENST00000524109.2:ENST00000507115.6:ENST00000507097.5:ENST00000504902.6:ENST00000508003.2:ENST00000506477.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	16	141	2	1.79684	1.89486	1.99288	0.00506305	0.00362703	0.0621733	0.055479
chr6	15283140	15283240	2823317	0	+	0.49	(0.476,0.515]	chr6	265190	338	INTRON	INTRON	JARID2	ENSG00000008083.14	ENST00000341776.7:ENST00000397311.4	protein_coding	protein_coding	protein_coding	protein_coding	5	47	2	1.68092	1.89483	2.10874	0.0474026	0.0285608	0.169265	0.12666
chr11	86061061	86061161	5014763	0	-	0.52	(0.515,0.57]	chr11	473022	291	INTRON	INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000630913.2:ENST00000528398.5:ENST00000356360.9:ENST00000534412.5:ENST00000531558.1:ENST00000531930.5:ENST00000532041.5:ENST00000525162.5:ENST00000528256.1:ENST00000528411.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	14	108	2	1.66882	1.8948049999999999	2.12079	0.00913026	0.00233112	0.0855292	0.0432675
chr1	28769317	28769409	58673	0	+	0.434783	(0.408,0.44]	chr1	7609	5	UTR3	UTR3:EXON_MRNA	YTHDF2	ENSG00000198492.16	ENST00000542507.5:ENST00000373812.8:ENST00000541996.5	protein_coding	protein_coding	protein_coding	protein_coding	10	76	2	1.17777	1.8947349999999998	2.6117	0.0604409	0.00555224	0.191687	0.0648867
chr11	57800212	57800307	4793526	0	+	0.368421	(0.35,0.378]	chr11	443757	3	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:INTRON	ENSG00000288534:CTNND1	ENSG00000288534.1:ENSG00000198561.16	ENST00000673781.1:ENST00000673810.1:ENST00000674116.1:ENST00000674060.1:ENST00000524630.5:ENST00000529919.5:ENST00000533189.1:ENST00000682741.1:ENST00000358694.10:ENST00000361332.8:ENST00000361391.10:ENST00000361796.9:ENST00000415361.6:ENST00000426142.6:ENST00000428599.6:ENST00000525902.5:ENST00000526357.5:ENST00000526772.5:ENST00000527467.5:ENST00000528232.5:ENST00000528621.5:ENST00000529526.5:ENST00000529873.5:ENST00000529986.5:ENST00000530094.5:ENST00000530748.5:ENST00000531014.5:ENST00000532245.5:ENST00000532463.5:ENST00000532649.5:ENST00000532787.5:ENST00000532844.5:ENST00000533667.5:ENST00000534579.5:ENST00000399050.10:ENST00000526938.5:ENST00000531007.2:ENST00000674015.1:ENST00000673826.1:ENST00000673683.1:ENST00000674106.1:ENST00000681984.1:ENST00000683906.1:ENST00000673661.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	66	2	1.59904	1.89469	2.19034	0.0285976	0.023941	0.139244	0.119443
chr10	100364027	100364127	4507831	0	+	0.31	(0.28,0.32]	chr10	415077	32	UTR3	UTR3:EXON_MRNA	SCD	ENSG00000099194.6	ENST00000370355.3	protein_coding	protein_coding	protein_coding	protein_coding	13	142	2	1.49102	1.89459	2.29816	0.0197455	0.00479572	0.120289	0.0602209
chr1	180501844	180501944	595827	0	-	0.37	(0.35,0.378]	chr1	71211	4	SS5_PROX	SS5_PROX:INTRON	ACBD6	ENSG00000230124.8	ENST00000645415.1:ENST00000642319.1:ENST00000367595.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	119	2	1.88704	1.8945699999999999	1.9021	0.011433	0.00509272	0.0886847	0.0646039
chr11	108209481	108209580	5035056	0	-	0.424242	(0.408,0.44]	chr11	474469	5	INTRON	INTRON	NPAT	ENSG00000149308.17	ENST00000278612.9:ENST00000610253.5:ENST00000531384.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	66	2	1.70409	1.894475	2.08486	0.028108	0.0145898	0.137011	0.0981689
chr11	86009257	86009354	5014233	0	-	0.329897	(0.32,0.35]	chr11	472976	13	INTRON	INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000630913.2:ENST00000528398.5:ENST00000356360.9:ENST00000534412.5:ENST00000531771.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	35	369	2	1.87757	1.89445	1.91133	0.00228294	8.17423e-4	0.0426764	0.026128
chr7	148823062	148823161	3670140	0	-	0.20202	[0,0.28]	chr7	340580	23	INTRON	INTRON	EZH2	ENSG00000106462.12	ENST00000683292.1:ENST00000320356.7:ENST00000492143.5:ENST00000478654.5:ENST00000350995.6:ENST00000460911.5:ENST00000683744.1:ENST00000682317.1:ENST00000682263.1:ENST00000684300.1:ENST00000476773.5:ENST00000483967.5:ENST00000498186.5:ENST00000483012.1:ENST00000682401.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	15	168	2	1.44766	1.89439	2.34112	0.0187322	0.0089545	0.117523	0.0800073
chr21	31727376	31727476	7437784	0	-	0.36	(0.35,0.378]	chr21	758689	207	INTRON	INTRON	SCAF4	ENSG00000156304.15	ENST00000286835.12:ENST00000399804.5:ENST00000434667.3:ENST00000485790.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	78	2	1.422	1.8943849999999998	2.36677	0.032366	0.0139343	0.145026	0.0957526
chr12	132682276	132682375	5449145	0	-	0.343434	(0.32,0.35]	chr12	521881	6	INTRON	INTRON	POLE	ENSG00000177084.18	ENST00000320574.10:ENST00000672742.1:ENST00000537064.5:ENST00000535270.5:ENST00000539357.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	51	2	1.38564	1.89436	2.40308	0.0793006	0.0417732	0.199711	0.161736
chr18	73250533	73250614	6988479	0	-	0.395062	(0.378,0.408]	chr18	691705	4	EXON_LNCRNA	EXON_LNCRNA:INTRON	LINC02864	ENSG00000263711.6	ENST00000584544.5:ENST00000581011.5:ENST00000581862.6:ENST00000669547.1:ENST00000661525.1:ENST00000583405.5:ENST00000582571.2	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	13	106	2	1.39203	1.894335	2.39664	0.022148	0.00480522	0.124017	0.0602209
chr8	53988856	53988954	3952962	0	-	0.459184	(0.44,0.476]	chr8	362539	2	INTRON	INTRON	TCEA1	ENSG00000187735.15	ENST00000396401.7:ENST00000521604.7:ENST00000521086.6:ENST00000522635.5:ENST00000522397.5:ENST00000640382.1:ENST00000640041.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	65	2	1.88483	1.89432	1.90381	0.0260626	0.0149825	0.122153	0.107704
chr15	66504790	66504855	6210665	0	-	0.630769	(0.57,1]	chr15	592746	1	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	RPL4	ENSG00000174444.15	ENST00000307961.11:ENST00000567229.5:ENST00000568588.5:ENST00000561775.5:ENST00000569696.5:ENST00000566039.5:ENST00000564439.5:ENST00000566622.5:ENST00000569438.2:ENST00000566624.5:ENST00000561554.5:ENST00000566491.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	56	232	2	1.32616	1.894165	2.46217	0.00416467	5.22698e-6	0.0591344	0.00170345
chr6	147680839	147680939	2990804	0	+	0.33	(0.32,0.35]	chr6	280163	43	INTRON	INTRON	ENSG00000227681	ENSG00000227681.5	ENST00000427015.1:ENST00000432506.5:ENST00000442094.5	lncRNA	lncRNA	lncRNA	lncRNA	6	65	2	1.83416	1.89412	1.95408	0.0631198	0.0124054	0.176946	0.0973643
chr21	38101335	38101435	7463899	0	-	0.37	(0.35,0.378]	chr21	760303	16	INTRON	INTRON	DSCR4	ENSG00000184029.9	ENST00000398948.5:ENST00000328264.7:ENST00000482032.1	lncRNA	lncRNA	lncRNA	lncRNA	9	89	2	1.83633	1.894085	1.95184	0.0335602	0.0052326	0.134145	0.0656295
chr14	21221965	21222065	5834682	0	-	0.41	(0.408,0.44]	chr14	554424	85	INTRON	INTRON	HNRNPC	ENSG00000092199.19	ENST00000336053.10:ENST00000553300.6:ENST00000554969.5:ENST00000556142.5:ENST00000554455.5:ENST00000430246.6:ENST00000553753.5:ENST00000555309.5:ENST00000555914.5:ENST00000557442.5:ENST00000556628.5:ENST00000556513.5:ENST00000555883.5:ENST00000557201.5:ENST00000556897.5:ENST00000420743.6:ENST00000557157.5:ENST00000554539.5:ENST00000554383.5:ENST00000554417.1:ENST00000555215.5:ENST00000555137.5:ENST00000554891.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	48	2	1.64062	1.89397	2.14732	0.0557275	0.0237354	0.165463	0.129075
chr18	73208175	73208275	6988054	0	-	0.45	(0.44,0.476]	chr18	691704	70	INTRON	INTRON	LINC02864	ENSG00000263711.6	ENST00000584544.5:ENST00000581011.5:ENST00000581862.6:ENST00000669547.1:ENST00000661525.1:ENST00000583405.5	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	6	57	2	1.61163	1.893915	2.1762	0.0598319	0.0092251	0.169278	0.0855292
chr11	94448334	94448434	5018101	0	-	0.52	(0.515,0.57]	chr11	473357	5	INTRON	INTRON	MRE11	ENSG00000020922.13	ENST00000323929.8:ENST00000407439.7:ENST00000323977.7:ENST00000393241.8	protein_coding	protein_coding	protein_coding	protein_coding	6	49	2	1.81744	1.893895	1.97035	0.031028	0.0195832	0.143457	0.109483
chr16	75369313	75369412	6528647	0	-	0.393939	(0.378,0.408]	chr16	632304	64	INTRON	INTRON	CFDP1	ENSG00000153774.9	ENST00000283882.4	protein_coding	protein_coding	protein_coding	protein_coding	11	107	2	1.86501	1.89385	1.92269	0.00909047	0.00836891	0.0822143	0.0809378
chr3	138825012	138825111	1831403	0	-	0.464646	(0.44,0.476]	chr3	184062	281	INTRON	INTRON	PIK3CB	ENSG00000051382.9	ENST00000674063.1:ENST00000477593.5:ENST00000462898.5:ENST00000483968.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	83	2	1.66633	1.8938450000000002	2.12136	0.0243614	0.00591413	0.12011	0.0694038
chr15	41290104	41290204	6004448	0	+	0.45	(0.44,0.476]	chr15	571261	4	SS3_PROX	SS3_PROX:INTRON	OIP5-AS1	ENSG00000247556.6	ENST00000558945.5:ENST00000500949.6:ENST00000561275.5:ENST00000560706.5:ENST00000501665.2	lncRNA	lncRNA	lncRNA	lncRNA	17	155	2	1.61505	1.893805	2.17256	0.0144293	6.19207e-4	0.0971833	0.0223951
chr1	6523697	6523795	367803	0	-	0.612245	(0.57,1]	chr1	43178	25	UTR3	UTR3:EXON_MRNA	NOL9	ENSG00000162408.11	ENST00000377705.6	protein_coding	protein_coding	protein_coding	protein_coding	7	28	2	1.26343	1.89374	2.52405	0.0641008	0.0263139	0.178019	0.133676
chr20	34911413	34911511	7261336	0	+	0.571429	(0.57,1]	chr20	737659	21	INTRON	INTRON	ACSS2	ENSG00000131069.20	ENST00000481971.5:ENST00000488172.5:ENST00000481284.5:ENST00000475459.6:ENST00000484354.1:ENST00000480274.1:ENST00000477932.5:ENST00000473172.5:ENST00000493805.6:ENST00000480978.5:ENST00000360596.7:ENST00000467019.5:ENST00000253382.5:ENST00000476922.5:ENST00000464399.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	10	44	2	1.26112	1.893725	2.52633	0.0533929	0.0018535	0.162935	0.039946
chr8	142663072	142663171	4081181	0	-	0.545455	(0.515,0.57]	chr8	370675	43	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	JRK	ENSG00000234616.9	ENST00000612905.2:ENST00000614134.1:ENST00000615982.4:ENST00000571961.7:ENST00000506774.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	41	2	1.75372	1.893665	2.03361	0.0386904	0.0325854	0.145164	0.14279
chr1	66941214	66941313	139603	0	+	0.313131	(0.28,0.32]	chr1	15656	6	INTRON	INTRON	MIER1	ENSG00000198160.15	ENST00000355977.10:ENST00000371018.7:ENST00000357692.6:ENST00000371016.5:ENST00000371014.5:ENST00000371012.6:ENST00000401041.6:ENST00000355356.3:ENST00000401042.7:ENST00000479067.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	50	2	1.76293	1.893615	2.0243	0.0766478	0.0364967	0.196164	0.153759
chr12	111481590	111481689	5412030	0	-	0.292929	(0.28,0.32]	chr12	516837	21	INTRON	INTRON	ATXN2	ENSG00000204842.18	ENST00000642389.2:ENST00000608853.5:ENST00000672613.1:ENST00000673436.1:ENST00000643669.2:ENST00000389154.7:ENST00000616825.4:ENST00000389153.10:ENST00000550104.5:ENST00000483311.6:ENST00000672335.1:ENST00000492467.6:ENST00000673557.1:ENST00000673283.1:ENST00000673273.1:ENST00000673449.1:ENST00000535949.5:ENST00000542287.6:ENST00000643474.1:ENST00000643694.1:ENST00000645162.1:ENST00000551755.6:ENST00000644883.1:ENST00000647305.1:ENST00000495342.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	50	2	1.76293	1.893615	2.0243	0.0766478	0.0364967	0.196164	0.153759
chrX	48577662	48577762	7658532	0	+	0.35	(0.32,0.35]	chrX	783806	6	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	RBM3	ENSG00000102317.18	ENST00000376759.8:ENST00000466764.5:ENST00000489344.5:ENST00000376755.1:ENST00000354480.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	48	485	2	1.33647	1.893535	2.4506	0.00940755	1.15143e-4	0.0861183	0.00967991
chr11	57714707	57714807	4792638	0	+	0.44	(0.408,0.44]	chr11	443656	15	INTRON	INTRON	ENSG00000288534:TMX2	ENSG00000288534.1:ENSG00000213593.10	ENST00000673781.1:ENST00000673810.1:ENST00000278422.9:ENST00000674116.1:ENST00000524972.5:ENST00000378312.8:ENST00000530114.5:ENST00000525035.5:ENST00000529403.1:ENST00000528110.5:ENST00000533602.5:ENST00000528042.1:ENST00000674060.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	74	2	1.60905	1.8934450000000003	2.17784	0.02971	0.00916282	0.129022	0.0855292
chr17	27311814	27311912	6580722	0	+	0.520408	(0.515,0.57]	chr17	639645	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	WSB1	ENSG00000109046.15	ENST00000467843.6:ENST00000262394.7:ENST00000348811.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	11	83	2	1.72899	1.89344	2.05789	0.00899744	0.00786509	0.0851009	0.076155
chr2	110660536	110660618	1206683	0	-	0.329268	(0.32,0.35]	chr2	128688	1	INTRON	INTRON	BUB1	ENSG00000169679.15	ENST00000302759.11:ENST00000535254.6:ENST00000409311.5:ENST00000466333.5:ENST00000666956.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	46	2	1.83416	1.893435	1.95271	0.0631198	0.0431213	0.176946	0.162255
chr21	6336001	6336101	7364935	0	+	0.34	(0.32,0.35]	chr21	751669	60	INTRON	INTRON	ENSG00000278903	ENSG00000278903.4	ENST00000688458.1:ENST00000689306.1:ENST00000624576.3:ENST00000623738.3:ENST00000692237.1:ENST00000624165.1	lncRNA	lncRNA	lncRNA	lncRNA	4	46	2	1.83416	1.893435	1.95271	0.0631198	0.0431213	0.176946	0.162255
chr3	25758402	25758501	1642589	0	-	0.484848	(0.476,0.515]	chr3	168666	68	INTRON	INTRON	NGLY1	ENSG00000151092.18	ENST00000280700.10:ENST00000428257.5:ENST00000675217.1:ENST00000676225.1:ENST00000493324.5:ENST00000396649.7:ENST00000308710.9:ENST00000280699.13:ENST00000674841.1:ENST00000675234.1:ENST00000463611.2:ENST00000417874.6:ENST00000427041.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	61	2	1.4095	1.893405	2.37731	0.054012	0.0111793	0.16443	0.0937192
chr10	100549731	100549831	4508890	0	+	0.41	(0.408,0.44]	chr10	415184	17	UTR3	UTR3:EXON_MRNA	HIF1AN	ENSG00000166135.14	ENST00000299163.7	protein_coding	protein_coding	protein_coding	protein_coding	12	105	2	1.28254	1.89339	2.50424	0.047205	0.00101099	0.152612	0.0293364
chr5	138167739	138167836	2731309	0	-	0.319588	(0.28,0.32]	chr5	257142	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	BRD8	ENSG00000112983.18	ENST00000254900.10:ENST00000402931.5:ENST00000230901.9:ENST00000454473.5:ENST00000418329.5:ENST00000441656.5:ENST00000411594.6:ENST00000512140.5:ENST00000453824.1:ENST00000471892.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	14	160	2	1.86895	1.893355	1.91776	0.0151045	0.00325956	0.0994339	0.0524646
chr7	12397470	12397570	3485377	0	-	0.37	(0.35,0.378]	chr7	325970	33	INTRON	INTRON	VWDE	ENSG00000146530.15	ENST00000275358.8:ENST00000452576.6:ENST00000521169.5:ENST00000326715.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	13	131	2	1.78395	1.89334	2.00273	0.0101597	0.00416915	0.0850389	0.0591344
chr9	120777685	120777767	4335306	0	-	0.47561	(0.44,0.476]	chr9	398247	3	INTRON	INTRON	FBXW2	ENSG00000119402.18	ENST00000684405.1:ENST00000684001.1:ENST00000684047.1:ENST00000608872.6:ENST00000453291.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	58	2	1.75627	1.8933049999999998	2.03034	0.0380723	0.0173569	0.157702	0.104189
chr3	141984473	141984573	1833783	0	-	0.27	[0,0.28]	chr3	184307	54	INTRON	INTRON	TFDP2	ENSG00000114126.18	ENST00000489671.6:ENST00000499676.5:ENST00000486111.5:ENST00000477292.5:ENST00000495310.5:ENST00000467072.5:ENST00000487734.5:ENST00000479040.5:ENST00000467667.5:ENST00000478006.5:ENST00000497579.5:ENST00000492919.1:ENST00000464782.5:ENST00000488107.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	85	2	1.84046	1.8933	1.94614	0.0335889	0.0298508	0.146709	0.129138
chr10	43391432	43391532	4605327	0	-	0.43	(0.408,0.44]	chr10	424249	31	INTRON	INTRON	HNRNPF	ENSG00000169813.17	ENST00000356053.7:ENST00000357065.8:ENST00000544000.5:ENST00000443950.6:ENST00000682386.1:ENST00000337970.7:ENST00000477108.5:ENST00000498176.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	120	2	1.4419	1.8932849999999999	2.34467	0.0327262	7.0284e-4	0.133816	0.0241881
chr20	35705730	35705830	7336167	0	-	0.44	(0.408,0.44]	chr20	747399	4	SS3_PROX	SS3_PROX:INTRON	RBM39	ENSG00000131051.24	ENST00000253363.11:ENST00000639702.1:ENST00000656873.1:ENST00000463004.5:ENST00000361162.10:ENST00000461283.5:ENST00000403542.6:ENST00000338163.10:ENST00000528062.7:ENST00000429968.5:ENST00000444878.5:ENST00000665058.1:ENST00000476806.5:ENST00000495293.5:ENST00000492779.5:ENST00000482563.1:ENST00000496183.5:ENST00000465158.5:ENST00000448303.5:ENST00000470563.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	13	119	2	1.73532	1.8931300000000002	2.05094	0.0194186	0.00159258	0.109149	0.0367961
chr20	47308068	47308167	7349023	0	-	0.414141	(0.408,0.44]	chr20	749336	88	INTRON	INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000468376.2:ENST00000435836.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	79	2	1.60344	1.893065	2.18269	0.0387506	0.0055386	0.160156	0.0648867
chr15	73571117	73571214	6220550	0	-	0.463918	(0.44,0.476]	chr15	593888	3	INTRON	INTRON	NPTN	ENSG00000156642.17	ENST00000351217.10:ENST00000345330.9:ENST00000565325.5:ENST00000562924.5:ENST00000563691.5:ENST00000565282.5:ENST00000564551.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	65	2	1.85904	1.89304	1.92704	0.029889	0.0128054	0.129138	0.0990564
chrX	13341430	13341530	7622370	0	+	0.49	(0.476,0.515]	chrX	780350	3	SS3_PROX	SS3_PROX:INTRON	LINC01203	ENSG00000226985.7	ENST00000669963.1:ENST00000661545.1:ENST00000659526.1:ENST00000656410.1:ENST00000661104.1:ENST00000456091.2:ENST00000655502.1:ENST00000671651.1:ENST00000656979.1:ENST00000656271.1:ENST00000661629.1:ENST00000661464.1:ENST00000419566.5:ENST00000668192.1:ENST00000665887.1:ENST00000659191.1:ENST00000667868.1:ENST00000653729.1:ENST00000656111.1	lncRNA	lncRNA	lncRNA	lncRNA	7	65	2	1.68907	1.89302	2.09697	0.0296007	0.0136924	0.142135	0.0949306
chr12	53452909	53453002	5142891	0	+	0.462366	(0.44,0.476]	chr12	485374	2	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	PCBP2	ENSG00000197111.16	ENST00000546463.6:ENST00000437231.5:ENST00000447282.5:ENST00000359282.9:ENST00000549863.5:ENST00000359462.9:ENST00000550520.6:ENST00000552296.6:ENST00000550192.5:ENST00000551104.5	protein_coding	protein_coding	protein_coding	protein_coding	11	98	2	1.49345	1.8930150000000001	2.29258	0.0271885	0.00279559	0.123904	0.0488779
chr16	23884684	23884783	6324247	0	+	0.444444	(0.44,0.476]	chr16	605697	155	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000645517.1:ENST00000498739.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	21	189	2	1.60624	1.8929649999999998	2.17969	0.009502	4.58109e-4	0.0817766	0.0193697
chr2	158457129	158457218	897139	0	+	0.629214	(0.57,1]	chr2	99333	3	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	PKP4	ENSG00000144283.23	ENST00000389759.8:ENST00000426248.7:ENST00000389757.7:ENST00000457109.5:ENST00000452162.5:ENST00000479398.5:ENST00000411900.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	21	97	2	1.49202	1.89296	2.2939	0.00947047	1.73332e-4	0.0863579	0.0120833
chr7	105051792	105051892	3375000	0	+	0.5	(0.476,0.515]	chr7	315877	104	INTRON	INTRON	KMT2E	ENSG00000005483.22	ENST00000622386.2:ENST00000257745.9:ENST00000334884.9:ENST00000311117.8:ENST00000478990.5:ENST00000495267.5:ENST00000476671.5:ENST00000667857.1:ENST00000474203.5:ENST00000482560.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	16	140	2	1.87544	1.8929399999999998	1.91044	0.0113658	0.00169881	0.0886611	0.0381936
chr22	19490752	19490851	7476944	0	+	0.30303	(0.28,0.32]	chr22	762407	64	INTRON	INTRON	CDC45	ENSG00000093009.11	ENST00000407835.6:ENST00000437685.6:ENST00000483431.5:ENST00000438587.6:ENST00000672837.1:ENST00000263201.7:ENST00000404724.7:ENST00000487669.5:ENST00000428937.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	119	2	1.80364	1.89292	1.9822	0.0188115	0.00761984	0.108861	0.0776647
chr11	78138305	78138405	4998332	0	-	0.4	(0.378,0.408]	chr11	472394	2	SS5_PROX	SS5_PROX:INTRON	ALG8	ENSG00000159063.14	ENST00000679559.1:ENST00000680398.1:ENST00000681221.1:ENST00000527099.2:ENST00000681489.1:ENST00000525783.6:ENST00000529139.6:ENST00000680761.1:ENST00000525870.6:ENST00000680866.1:ENST00000680223.1:ENST00000526737.6:ENST00000681575.1:ENST00000299626.10:ENST00000680467.1:ENST00000679497.1:ENST00000681351.1:ENST00000679697.1:ENST00000680580.1:ENST00000526849.6:ENST00000680256.1:ENST00000680797.1:ENST00000681723.1:ENST00000680142.1:ENST00000679685.1:ENST00000681384.1:ENST00000679874.1:ENST00000679444.1:ENST00000680459.1:ENST00000681699.1:ENST00000679986.1:ENST00000680063.1:ENST00000530608.6:ENST00000681765.1:ENST00000681225.1:ENST00000681417.1:ENST00000530910.6:ENST00000680329.1:ENST00000376156.7:ENST00000679648.1:ENST00000680101.1:ENST00000680829.1:ENST00000525761.3:ENST00000532440.6:ENST00000680996.1:ENST00000532306.6:ENST00000680399.1:ENST00000679539.1:ENST00000615266.5:ENST00000681957.1:ENST00000532552.2:ENST00000680643.1:ENST00000530454.6:ENST00000525755.6:ENST00000532050.5:ENST00000526928.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	61	2	1.72045	1.8929	2.06535	0.0424671	0.0159849	0.161763	0.101453
chr5	54064652	54064751	2618452	0	-	0.30303	(0.28,0.32]	chr5	248837	165	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	16	186	2	1.82248	1.8928449999999999	1.96321	0.0106689	0.00263114	0.0861859	0.0471758
chr16	89290028	89290124	6541560	0	-	0.333333	(0.32,0.35]	chr16	634152	10	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000644285.1:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000645212.1:ENST00000646345.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	15	153	2	1.35778	1.892775	2.42777	0.0325899	9.29501e-4	0.133687	0.0278746
chr1	65335118	65335217	136346	0	+	0.515152	(0.476,0.515]	chr1	15352	248	INTRON	INTRON	DNAJC6	ENSG00000116675.16	ENST00000463018.5:ENST00000494710.6:ENST00000263441.11:ENST00000395325.7:ENST00000483402.1:ENST00000371069.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	110	2	1.85394	1.8926699999999999	1.9314	0.00763096	0.00643736	0.0777238	0.0697513
chr17	75787475	75787574	6676433	0	+	0.484848	(0.476,0.515]	chr17	651899	21	INTRON	INTRON	UNK	ENSG00000132478.10	ENST00000589666.6:ENST00000589790.1:ENST00000587501.1:ENST00000586527.1:ENST00000592629.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	54	2	1.40757	1.8924400000000001	2.37731	0.0707852	0.0111793	0.184528	0.0937192
chr6	27127746	27127844	3072315	0	-	0.295918	(0.28,0.32]	chr6	285574	9	INTRON	INTRON	H2BC11	ENSG00000124635.9	ENST00000607124.1:ENST00000606923.1	protein_coding	protein_coding	protein_coding	protein_coding	7	84	2	1.72279	1.89243	2.06207	0.0496859	0.00876132	0.156383	0.0846118
chr20	32369720	32369817	7255937	0	+	0.443299	(0.44,0.476]	chr20	737066	2	INTRON	INTRON	ASXL1	ENSG00000171456.21	ENST00000651418.1:ENST00000375687.10:ENST00000613218.4:ENST00000646367.1:ENST00000644587.1:ENST00000620121.4:ENST00000645337.1:ENST00000649901.1:ENST00000646985.1:ENST00000645035.1:ENST00000497249.6:ENST00000643168.1:ENST00000375689.5:ENST00000306058.9:ENST00000555343.2:ENST00000645688.1:ENST00000642676.1:ENST00000470145.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	80	2	1.8376	1.892415	1.94723	0.0227424	0.00813403	0.117618	0.0810802
chr6	57133967	57134059	2878506	0	+	0.445652	(0.44,0.476]	chr6	273277	4	INTRON	INTRON	ZNF451	ENSG00000112200.17	ENST00000357489.7:ENST00000444273.6:ENST00000370706.9:ENST00000491832.6:ENST00000502749.1:ENST00000504603.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	46	2	1.40212	1.892155	2.38219	0.0524678	0.045456	0.178047	0.149888
chr4	168993711	168993810	2294506	0	-	0.313131	(0.28,0.32]	chr4	222054	30	INTRON	INTRON	CBR4	ENSG00000145439.12	ENST00000510042.5:ENST00000509108.1:ENST00000306193.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	69	2	1.64429	1.8921549999999998	2.14002	0.0365539	0.0304107	0.153932	0.130461
chr1	162590811	162590911	238617	0	+	0.44	(0.408,0.44]	chr1	28739	3	SS5_PROX	SS5_PROX:INTRON	UAP1	ENSG00000117143.14	ENST00000367925.6:ENST00000367926.9	protein_coding	protein_coding	protein_coding	protein_coding	6	55	2	1.44993	1.8921199999999998	2.33431	0.0638951	0.0129219	0.177824	0.0990564
chr1	65597965	65598062	138972	0	+	0.381443	(0.378,0.408]	chr1	15530	10	INTRON	INTRON	LEPR	ENSG00000116678.20	ENST00000371060.7:ENST00000371059.7:ENST00000349533.11:ENST00000616738.4:ENST00000344610.12:ENST00000462765.5:ENST00000371058.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	49	2	1.8374	1.892105	1.94681	0.0457723	0.0299228	0.149888	0.142135
chr1	154251953	154252053	227852	0	+	0.4	(0.378,0.408]	chr1	26302	3	SS5_PROX	SS5_PROX:INTRON	UBAP2L	ENSG00000143569.19	ENST00000343815.10:ENST00000271877.11:ENST00000613315.4:ENST00000428931.6:ENST00000361546.6	protein_coding	protein_coding	protein_coding	protein_coding	5	49	2	1.8374	1.892105	1.94681	0.0457723	0.0299228	0.149888	0.142135
chr2	188264931	188265031	1295170	0	-	0.33	(0.32,0.35]	chr2	135671	360	INTRON	INTRON	LINC01090	ENSG00000231689.3	ENST00000434418.2:ENST00000632331.1:ENST00000415357.1	lncRNA	lncRNA	lncRNA	lncRNA	8	77	2	1.437	1.8920500000000002	2.3471	0.0386366	0.0156413	0.159793	0.101393
chr7	121001075	121001175	3393761	0	+	0.38	(0.378,0.408]	chr7	317676	66	INTRON	INTRON	CPED1	ENSG00000106034.18	ENST00000340646.9:ENST00000310396.10:ENST00000428526.5:ENST00000495036.5:ENST00000450913.6:ENST00000520801.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	49	2	1.78011	1.892045	2.00398	0.0393906	0.0356367	0.151629	0.143072
chr9	130875552	130875650	4215485	0	+	0.387755	(0.378,0.408]	chr9	386466	1	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000318560.6	protein_coding	protein_coding	protein_coding	protein_coding	5	49	2	1.78011	1.892045	2.00398	0.0393906	0.0356367	0.151629	0.143072
chr1	160311109	160311204	571985	0	-	0.473684	(0.44,0.476]	chr1	69324	10	EXON_MRNA	EXON_MRNA:INTRON	COPA	ENSG00000122218.17	ENST00000241704.8:ENST00000696204.1:ENST00000696203.1:ENST00000696202.1:ENST00000649963.1:ENST00000696208.1:ENST00000696207.1:ENST00000696206.1:ENST00000649676.1:ENST00000368069.7:ENST00000647693.1:ENST00000649787.1:ENST00000650154.1:ENST00000647799.1:ENST00000648805.1:ENST00000647683.1:ENST00000649231.1:ENST00000648501.1:ENST00000696209.1:ENST00000696210.1:ENST00000696211.1:ENST00000647899.1:ENST00000696212.1:ENST00000696214.1:ENST00000696213.1:ENST00000696215.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	59	2	1.17605	1.891895	2.60774	0.060782	0.0255874	0.192641	0.120269
chr22	29287134	29287234	7496256	0	+	0.32	(0.28,0.32]	chr22	764828	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	EWSR1	ENSG00000182944.18	ENST00000629659.2:ENST00000332050.10:ENST00000397938.7:ENST00000406548.5:ENST00000437155.6:ENST00000331029.11:ENST00000483415.5:ENST00000414183.6:ENST00000333395.10:ENST00000332035.10:ENST00000455726.5:ENST00000479135.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	96	2	1.57779	1.8917950000000001	2.2058	0.0502605	0.00496409	0.156383	0.0646039
chr19	9432769	9432868	7132536	0	-	0.383838	(0.378,0.408]	chr19	718745	122	INTRON	INTRON	ZNF266	ENSG00000174652.20	ENST00000592904.7:ENST00000588221.5:ENST00000588933.5:ENST00000590306.5:ENST00000651268.1:ENST00000592292.5	protein_coding	protein_coding	protein_coding	protein_coding	4	41	2	1.88729	1.89175	1.89621	0.0532327	0.0488044	0.173377	0.162538
chr21	29304599	29304698	7392408	0	+	0.383838	(0.378,0.408]	chr21	753179	34	INTRON	INTRON	BACH1	ENSG00000156273.16	ENST00000548219.5:ENST00000550131.5:ENST00000547141.5:ENST00000546469.5:ENST00000286800.8:ENST00000399921.5:ENST00000548467.1:ENST00000451655.5:ENST00000447177.5	protein_coding	protein_coding	protein_coding	protein_coding	4	41	2	1.88729	1.89175	1.89621	0.0532327	0.0488044	0.173377	0.162538
chr12	53478807	53478905	5143172	0	+	0.244898	[0,0.28]	chr12	485454	29	INTRON	INTRON	PCBP2	ENSG00000197111.16	ENST00000546463.6:ENST00000437231.5:ENST00000447282.5:ENST00000359282.9:ENST00000549863.5:ENST00000359462.9:ENST00000552296.6:ENST00000552819.5:ENST00000455667.7:ENST00000439930.7:ENST00000548933.5:ENST00000562264.5:ENST00000550585.5:ENST00000547859.2:ENST00000547048.5:ENST00000550733.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	175	2	1.72372	1.89174	2.05976	0.0276803	0.00261312	0.123904	0.0470772
chr20	62931396	62931496	7362505	0	-	0.31	(0.28,0.32]	chr20	751216	22	INTRON	INTRON	DIDO1	ENSG00000101191.17	ENST00000266070.8:ENST00000370371.8	protein_coding	protein_coding	protein_coding	protein_coding	8	96	2	1.81492	1.8916650000000002	1.96841	0.0253829	0.0124199	0.12011	0.0973643
chr2	134930957	134931056	872359	0	+	0.494949	(0.476,0.515]	chr2	97663	107	INTRON	INTRON	CCNT2	ENSG00000082258.13	ENST00000419781.5:ENST00000446247.5:ENST00000264157.10:ENST00000452839.5:ENST00000295238.10:ENST00000475094.1:ENST00000417175.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	39	2	1.86492	1.8915449999999998	1.91817	0.0550347	0.0459211	0.165463	0.164984
chr4	124711674	124711774	2235009	0	-	0.4	(0.378,0.408]	chr4	218991	4	SS3_PROX	SS3_PROX:INTRON	ANKRD50	ENSG00000151458.12	ENST00000504087.6:ENST00000515641.1	protein_coding	protein_coding	protein_coding	protein_coding	7	63	2	1.67073	1.8913350000000002	2.11194	0.0292534	0.0219426	0.128055	0.123836
chr5	127023525	127023625	2714488	0	-	0.46	(0.44,0.476]	chr5	255278	768	INTRON	INTRON	MARCHF3	ENSG00000173926.6	ENST00000308660.6:ENST00000502289.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	60	2	1.35267	1.891315	2.42996	0.060678	0.0104804	0.192323	0.0855777
chr2	107736045	107736145	1205910	0	-	0.46	(0.44,0.476]	chr2	128532	184	INTRON	INTRON	LINC01885:ENSG00000286769	ENSG00000237880.2:ENSG00000286769.1	ENST00000654481.1:ENST00000669817.1	lncRNA	lncRNA	lncRNA	lncRNA	12	110	2	1.85695	1.891295	1.92564	0.0088884	0.00555103	0.0797916	0.0675005
chr9	123167490	123167589	4339458	0	-	0.333333	(0.32,0.35]	chr9	398906	61	INTRON	INTRON	STRBP	ENSG00000165209.19	ENST00000348403.10:ENST00000447404.6:ENST00000360998.3:ENST00000407982.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	119	2	1.66804	1.891275	2.11451	0.0271264	0.00267385	0.123904	0.0478106
chr11	65438150	65438250	4805924	0	+	0.51	(0.476,0.515]	chr11	446554	155	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	95	839	2	1.6462	1.891235	2.13627	0.0016256	3.64392e-5	0.0367966	0.0048401
chr8	73293420	73293498	3967599	0	-	0.602564	(0.57,1]	chr8	364041	2	SS5_PROX	SS5_PROX:INTRON	RPL7	ENSG00000147604.14	ENST00000352983.7:ENST00000396467.5:ENST00000396466.5:ENST00000396465.5	protein_coding	protein_coding	protein_coding	protein_coding	8	39	2	1.71424	1.891235	2.06823	0.0279017	0.00680672	0.137011	0.0711884
chr14	69397440	69397536	5916298	0	-	0.416667	(0.408,0.44]	chr14	562069	22	INTRON	INTRON	ERH	ENSG00000100632.11	ENST00000557016.6:ENST00000216520.6:ENST00000555373.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	48	2	1.74775	1.89103	2.03431	0.0735403	0.0154896	0.190238	0.108998
chr7	100875936	100876028	3365827	0	+	0.391304	(0.378,0.408]	chr7	315031	1	SS5_PROX	SS5_PROX:INTRON	SRRT	ENSG00000087087.20	ENST00000611405.5:ENST00000614484.4:ENST00000618262.4:ENST00000614370.4:ENST00000618411.4:ENST00000431645.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	68	2	1.64169	1.89099	2.14029	0.0377255	0.0106742	0.14078	0.0917199
chr2	15452523	15452623	1072060	0	-	0.47	(0.44,0.476]	chr2	114368	244	INTRON	INTRON	NBAS	ENSG00000151779.13	ENST00000281513.10	protein_coding	protein_coding	protein_coding	protein_coding	5	47	2	1.81595	1.8909850000000001	1.96602	0.0426807	0.0317953	0.148082	0.14477
chr18	36781598	36781698	6963889	0	-	0.47	(0.44,0.476]	chr18	689184	4	SS5_PROX	SS5_PROX:INTRON	TPGS2	ENSG00000134779.15	ENST00000590258.2:ENST00000590652.5:ENST00000614939.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	47	2	1.75627	1.8909250000000002	2.02558	0.0380723	0.0363567	0.157702	0.138959
chr1	54381086	54381186	463508	0	-	0.55	(0.515,0.57]	chr1	55784	244	INTRON	INTRON	SSBP3	ENSG00000157216.16	ENST00000610401.5:ENST00000357475.9:ENST00000371319.8:ENST00000417664.7:ENST00000533946.6:ENST00000371320.8:ENST00000525990.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	35	2	1.44089	1.89088	2.34087	0.0617046	0.0469761	0.193423	0.151917
chr11	66627063	66627162	4810907	0	+	0.535354	(0.515,0.57]	chr11	447878	5	UTR3	UTR3:EXON_MRNA:INTRON	RBM14-RBM4:RBM14	ENSG00000248643.5:ENSG00000239306.5	ENST00000412278.2:ENST00000393979.3:ENST00000511114.1:ENST00000310137.5:ENST00000421355.1:ENST00000500635.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	35	2	1.44089	1.89088	2.34087	0.0617046	0.0469761	0.193423	0.151917
chr11	73692191	73692291	4985094	0	-	0.55	(0.515,0.57]	chr11	470855	121	INTRON	INTRON	RAB6A	ENSG00000175582.20	ENST00000310653.10:ENST00000336083.8:ENST00000541973.5:ENST00000536566.5:ENST00000541588.5:ENST00000545625.5:ENST00000540771.5:ENST00000537446.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	35	2	1.44089	1.89088	2.34087	0.0617046	0.0469761	0.193423	0.151917
chr1	162525641	162525741	238277	0	+	0.35	(0.32,0.35]	chr1	28688	32	UTR3	UTR3:EXON_MRNA	UHMK1	ENSG00000152332.16	ENST00000545294.5:ENST00000538489.5:ENST00000489294.2	protein_coding	protein_coding	protein_coding	protein_coding	26	219	2	1.13747	1.890825	2.64418	0.0307545	5.33822e-4	0.143385	0.0213736
chr2	61517534	61517632	1131012	0	-	0.377551	(0.35,0.378]	chr2	121606	27	INTRON	INTRON	XPO1	ENSG00000082898.19	ENST00000676553.1:ENST00000677556.1:ENST00000677814.1:ENST00000676771.1:ENST00000677803.1:ENST00000677239.1:ENST00000678790.1:ENST00000677928.1:ENST00000678182.1:ENST00000677150.1:ENST00000678172.1:ENST00000678360.1:ENST00000678081.1:ENST00000676889.1:ENST00000676783.1:ENST00000679035.1:ENST00000677422.1:ENST00000677417.1:ENST00000677813.1:ENST00000676999.1:ENST00000676667.1:ENST00000678263.1:ENST00000678877.1:ENST00000677933.1:ENST00000680228.1:ENST00000677289.1:ENST00000677190.1:ENST00000401558.7:ENST00000428210.5:ENST00000677290.1:ENST00000677850.1:ENST00000451765.6:ENST00000676789.1:ENST00000678741.1:ENST00000404992.6:ENST00000406957.5:ENST00000443240.5:ENST00000476585.5:ENST00000468259.1:ENST00000420673.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	15	147	2	1.85621	1.890715	1.92522	0.00990167	0.00256457	0.0838372	0.0466761
chr2	158669535	158669627	899302	0	+	0.358696	(0.35,0.378]	chr2	99468	5	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	PKP4	ENSG00000144283.23	ENST00000389759.8:ENST00000426248.7:ENST00000389757.7:ENST00000480171.7:ENST00000486254.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	43	2	1.87717	1.8906100000000001	1.90405	0.0555068	0.0482651	0.171852	0.165463
chr22	19509587	19509686	7477145	0	+	0.353535	(0.35,0.378]	chr22	762458	5	INTRON	INTRON	CDC45	ENSG00000093009.11	ENST00000407835.6:ENST00000437685.6:ENST00000438587.6:ENST00000672837.1:ENST00000263201.7:ENST00000404724.7:ENST00000471470.1:ENST00000671972.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	43	2	1.87717	1.8906100000000001	1.90405	0.0555068	0.0482651	0.171852	0.165463
chr7	43689510	43689609	3525978	0	-	0.373737	(0.35,0.378]	chr7	328779	234	INTRON	INTRON	COA1	ENSG00000106603.20	ENST00000415076.6:ENST00000446330.6:ENST00000446564.5:ENST00000438444.5:ENST00000223336.11:ENST00000310564.10:ENST00000415798.5:ENST00000431651.5:ENST00000451651.5:ENST00000418140.5:ENST00000448704.5:ENST00000470156.1:ENST00000457939.1:ENST00000420441.1:ENST00000478504.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	43	2	1.87717	1.8906100000000001	1.90405	0.0555068	0.0482651	0.171852	0.165463
chr1	52864657	52864753	105129	0	+	0.53125	(0.515,0.57]	chr1	13746	1	INTRON	INTRON	ZYG11A	ENSG00000203995.10	ENST00000371532.5:ENST00000612017.4:ENST00000371528.2	protein_coding	protein_coding	protein_coding	protein_coding	6	46	2	1.56838	1.890555	2.21273	0.0424458	0.0196151	0.161763	0.109486
chr19	11125131	11125230	7017195	0	+	0.474747	(0.44,0.476]	chr19	697502	14	INTRON	INTRON	LDLR	ENSG00000130164.14	ENST00000557933.5:ENST00000558518.6:ENST00000545707.5:ENST00000535915.5:ENST00000455727.6:ENST00000558013.5:ENST00000252444.9	protein_coding	protein_coding	protein_coding	protein_coding	7	65	2	1.47433	1.89053	2.30673	0.0595438	0.0055175	0.16883600000000001	0.0672816
chr15	34534870	34534969	6133403	0	-	0.444444	(0.44,0.476]	chr15	584353	3	INTRON	INTRON	GOLGA8B	ENSG00000215252.12	ENST00000683415.1:ENST00000342314.9:ENST00000569100.5:ENST00000484716.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	65	2	1.81283	1.89044	1.96805	0.0343005	0.0109533	0.135641	0.0925675
chr4	159163965	159164065	2074109	0	+	0.45	(0.44,0.476]	chr4	205172	594	INTRON	INTRON	RAPGEF2	ENSG00000109756.10	ENST00000644474.1:ENST00000691494.1:ENST00000505478.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	65	2	1.81283	1.89044	1.96805	0.0343005	0.0109533	0.135641	0.0925675
chr1	23321227	23321327	399356	0	-	0.38	(0.378,0.408]	chr1	47854	3	SS5_PROX	SS5_PROX:INTRON	HNRNPR	ENSG00000125944.21	ENST00000478691.5:ENST00000302271.11:ENST00000374616.7:ENST00000374612.5:ENST00000675048.1:ENST00000606561.5:ENST00000427764.3:ENST00000463552.5:ENST00000470941.5:ENST00000476451.2	protein_coding	protein_coding	protein_coding	protein_coding	17	162	2	1.55155	1.8904200000000002	2.22929	0.0192429	4.66933e-4	0.108861	0.0195793
chr3	185917319	185917418	1886382	0	-	0.333333	(0.32,0.35]	chr3	188595	29	UTR3	UTR3:EXON_MRNA	TRA2B	ENSG00000136527.19	ENST00000453386.7:ENST00000492417.5:ENST00000463328.5:ENST00000259043.11:ENST00000414862.5:ENST00000487615.5:ENST00000466832.5:ENST00000456380.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	14	145	2	1.50797	1.890415	2.27286	0.0173844	0.00287114	0.112484	0.0474836
chr1	1730055	1730153	361275	0	-	0.44898	(0.44,0.476]	chr1	42112	43	INTRON	INTRON	ENSG00000268575:SLC35E2A	ENSG00000268575.1:ENSG00000215790.8	ENST00000598846.1:ENST00000647043.1	lncRNA	lncRNA	lncRNA:transcribed_unprocessed_pseudogene	lncRNA:processed_transcript	12	108	2	1.82337	1.8904	1.95743	0.00839972	0.0063815	0.0775646	0.0725747
chr15	92900995	92901066	6103693	0	+	0.28169	(0.28,0.32]	chr15	581382	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ENSG00000279765:CHD2	ENSG00000279765.3:ENSG00000173575.22	ENST00000629685.2:ENST00000630790.1:ENST00000626874.2:ENST00000627622.1:ENST00000394196.9:ENST00000635856.1:ENST00000420239.7:ENST00000628375.2:ENST00000629346.2:ENST00000625990.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	12	124	2	1.47018	1.890365	2.31055	0.0213496	0.00834688	0.123639	0.0774402
chr1	203796622	203796722	296689	0	+	0.39	(0.378,0.408]	chr1	34127	11	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	ZC3H11A:ZBED6	ENSG00000058673.17:ENSG00000257315.3	ENST00000367210.3:ENST00000453771.5:ENST00000432282.5:ENST00000466470.5:ENST00000638800.1:ENST00000461980.1:ENST00000367214.5:ENST00000492823.1:ENST00000639812.1:ENST00000367212.7:ENST00000332127.8:ENST00000550078.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	10	94	2	1.83034	1.8903	1.95026	0.0138007	0.00851588	0.095051	0.0833995
chr22	30971582	30971680	7501275	0	+	0.418367	(0.408,0.44]	chr22	765293	19	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS3_PROX:SS5_PROX:INTRON	TUG1	ENSG00000253352.10	ENST00000646496.1:ENST00000644773.2:ENST00000569384.2:ENST00000643920.1:ENST00000602971.2:ENST00000519077.4:ENST00000643280.1:ENST00000643877.1:ENST00000643071.1:ENST00000540687.6:ENST00000644027.1:ENST00000647354.1:ENST00000643553.1:ENST00000569149.2:ENST00000563812.2:ENST00000566220.2:ENST00000521091.6:ENST00000643077.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	22	200	2	1.75539	1.8902999999999999	2.02521	0.00319803	0.00164038	0.0521027	0.0369207
chr4	82427000	82427089	2177596	0	-	0.47191	(0.44,0.476]	chr4	214174	4	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HNRNPDL	ENSG00000152795.18	ENST00000621267.4:ENST00000614627.4:ENST00000295470.10:ENST00000507721.5:ENST00000502762.4:ENST00000349655.8:ENST00000602300.5:ENST00000630114.2:ENST00000630827.1:ENST00000514511.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	69	2	1.44767	1.890195	2.33272	0.0386573	0.0129984	0.142788	0.0991656
chr7	105055880	105055979	3375041	0	+	0.363636	(0.35,0.378]	chr7	315877	145	INTRON	INTRON	KMT2E	ENSG00000005483.22	ENST00000622386.2:ENST00000257745.9:ENST00000334884.9:ENST00000311117.8:ENST00000478990.5:ENST00000495267.5:ENST00000476671.5:ENST00000667857.1:ENST00000474203.5:ENST00000482560.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	17	152	2	1.72875	1.89013	2.05151	0.00998861	0.00350757	0.0843858	0.0545177
chr14	103693352	103693452	5828310	0	+	0.51	(0.476,0.515]	chr14	553140	4	SS3_PROX	SS3_PROX:INTRON	KLC1	ENSG00000126214.22	ENST00000348520.10:ENST00000334553.11:ENST00000555836.5:ENST00000347839.10:ENST00000452929.6:ENST00000554280.5:ENST00000557450.5:ENST00000554228.5:ENST00000634686.1:ENST00000246489.11:ENST00000537046.6:ENST00000535194.2:ENST00000538504.6:ENST00000557143.1:ENST00000557686.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	47	2	1.86492	1.890085	1.91525	0.0550347	0.0232571	0.165463	0.127416
chr6	37821915	37822015	2857054	0	+	0.51	(0.476,0.515]	chr6	270225	15	INTRON	INTRON	ZFAND3	ENSG00000156639.12	ENST00000287218.9:ENST00000373391.6:ENST00000474522.5	protein_coding	protein_coding	protein_coding	protein_coding	8	75	2	1.78315	1.8900700000000001	1.99699	0.0215899	0.0110277	0.123836	0.0873897
chr2	170938418	170938517	916484	0	+	0.353535	(0.35,0.378]	chr2	100871	13	INTRON	INTRON	GORASP2	ENSG00000115806.13	ENST00000471559.5:ENST00000444801.5:ENST00000234160.5:ENST00000493692.5:ENST00000497674.5:ENST00000455067.5:ENST00000454751.5:ENST00000442798.5:ENST00000497928.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	52	2	1.75561	1.8899249999999999	2.02424	0.0739399	0.0164934	0.190914	0.110301
chr4	1873837	1873936	1910594	0	+	0.434343	(0.408,0.44]	chr4	191707	19	INTRON	INTRON	NSD2	ENSG00000109685.19	ENST00000508803.6:ENST00000507820.5:ENST00000508355.5:ENST00000514045.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	12	110	2	1.62745	1.889915	2.15238	0.0145847	0.00382586	0.105962	0.0542786
chr7	158821148	158821248	3689730	0	-	0.33	(0.32,0.35]	chr7	342421	217	INTRON	INTRON	ESYT2	ENSG00000117868.18	ENST00000251527.10:ENST00000275418.13:ENST00000652148.1:ENST00000483958.5:ENST00000497111.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	83	2	1.35626	1.8898899999999998	2.42352	0.0414162	0.0122807	0.161578	0.091087
chr6	17609631	17609730	2826714	0	+	0.363636	(0.35,0.378]	chr6	265438	14	UTR3	UTR3:EXON_MRNA	FAM8A1	ENSG00000137414.7	ENST00000259963.4:ENST00000688732.1:ENST00000690940.1:ENST00000691422.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	73	2	1.56287	1.889865	2.21686	0.0697648	0.00414535	0.184298	0.0589266
chr3	42629861	42629959	1406273	0	+	0.397959	(0.378,0.408]	chr3	147680	28	EXON_MRNA	EXON_MRNA:INTRON	NKTR	ENSG00000114857.19	ENST00000468735.6:ENST00000429888.5:ENST00000232978.13:ENST00000465584.5:ENST00000466553.1:ENST00000498730.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	20	185	2	1.64836	1.8898450000000002	2.13133	0.00558475	0.00162934	0.0678774	0.036834
chr15	25407164	25407262	6121513	0	-	0.459184	(0.44,0.476]	chr15	582900	2	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	UBE3A	ENSG00000114062.22	ENST00000648336.2:ENST00000438097.6:ENST00000635914.1:ENST00000638155.1:ENST00000637886.1:ENST00000638011.1:ENST00000649550.1:ENST00000650110.1:ENST00000630424.2:ENST00000566215.5:ENST00000428984.6:ENST00000675177.1:ENST00000675593.1:ENST00000625778.3:ENST00000675000.1:ENST00000626793.2:ENST00000628733.2:ENST00000630907.2:ENST00000675038.1:ENST00000630607.2:ENST00000629886.2:ENST00000628267.2:ENST00000629252.2:ENST00000628890.1:ENST00000625681.2:ENST00000626589.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	9	83	2	1.72421	1.8898350000000002	2.05546	0.0285163	0.00467486	0.12666	0.0631417
chr11	43324824	43324923	4776332	0	+	0.515152	(0.476,0.515]	chr11	441617	8	INTRON	INTRON	API5	ENSG00000166181.13	ENST00000534695.5:ENST00000455725.6:ENST00000531273.6:ENST00000420461.6:ENST00000378852.7:ENST00000534600.5:ENST00000526394.1	protein_coding	protein_coding	protein_coding	protein_coding	5	47	2	1.61586	1.889815	2.16377	0.0567093	0.0243026	0.185107	0.12011
chr9	92427558	92427658	4155462	0	+	0.49	(0.476,0.515]	chr9	379002	473	INTRON	INTRON	CENPP	ENSG00000188312.14	ENST00000375587.8	protein_coding	protein_coding	protein_coding	protein_coding	5	47	2	1.61586	1.889815	2.16377	0.0567093	0.0243026	0.185107	0.12011
chr16	18790285	18790383	6456686	0	-	0.622449	(0.57,1]	chr16	622536	5	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	RPS15A	ENSG00000134419.15	ENST00000322989.8:ENST00000572008.5:ENST00000563390.5:ENST00000574723.5:ENST00000576008.5:ENST00000562935.5:ENST00000569365.6:ENST00000573554.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	43	191	2	1.82258	1.889795	1.95701	2.87305e-4	2.44287e-4	0.0150603	0.0144094
chr21	9793640	9793739	7426847	0	-	0.313131	(0.28,0.32]	chr21	757630	6	INTRON	INTRON	LINC01667	ENSG00000280081.4	ENST00000651542.1:ENST00000623554.3	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	6	74	2	1.81152	1.88977	1.96802	0.034446	0.0251578	0.147767	0.12011
chr10	63351775	63351875	4634248	0	-	0.38	(0.378,0.408]	chr10	426226	827	INTRON	INTRON	JMJD1C	ENSG00000171988.20	ENST00000399262.7:ENST00000633035.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	56	2	1.6165	1.8897650000000001	2.16303	0.0374185	0.0252473	0.155878	0.12011
chr3	50101300	50101399	1424615	0	+	0.40404	(0.378,0.408]	chr3	150132	8	UTR3	UTR3:EXON_MRNA:INTRON	RBM5	ENSG00000003756.17	ENST00000347869.8:ENST00000404526.6:ENST00000469838.5:ENST00000464087.6:ENST00000395174.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	56	2	1.6165	1.8897650000000001	2.16303	0.0374185	0.0252473	0.155878	0.12011
chr8	92782475	92782575	3989930	0	-	0.4	(0.378,0.408]	chr8	365352	170	INTRON	INTRON	FLJ46284	ENSG00000248858.7	ENST00000504861.2	lncRNA	lncRNA	lncRNA	lncRNA	6	56	2	1.6165	1.8897650000000001	2.16303	0.0374185	0.0252473	0.155878	0.12011
chr6	75620740	75620840	2905131	0	+	0.44	(0.408,0.44]	chr6	274479	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	SENP6	ENSG00000112701.18	ENST00000370010.6:ENST00000447266.7:ENST00000327284.12:ENST00000493959.6:ENST00000483859.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	75	2	1.69172	1.8897249999999999	2.08773	0.0486032	0.00404379	0.153946	0.0578376
chr7	44466172	44466272	3528044	0	-	0.4	(0.378,0.408]	chr7	328977	381	INTRON	INTRON	NUDCD3	ENSG00000015676.18	ENST00000355451.8:ENST00000460110.5:ENST00000472246.5:ENST00000464812.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	49	2	1.72045	1.88971	2.05897	0.0424671	0.0339294	0.161763	0.134508
chr7	121047692	121047792	3394229	0	+	0.46	(0.44,0.476]	chr7	317688	3	INTRON	INTRON	CPED1	ENSG00000106034.18	ENST00000340646.9:ENST00000310396.10:ENST00000428526.5:ENST00000495036.5:ENST00000450913.6:ENST00000520801.5:ENST00000521774.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	18	162	2	1.73751	1.889615	2.04172	0.0088224	0.00100554	0.0792321	0.0292285
chr12	54294069	54294163	5330923	0	-	0.521277	(0.515,0.57]	chr12	508648	3	INTRON	INTRON	NFE2	ENSG00000123405.14	ENST00000435572.7:ENST00000312156.8:ENST00000540264.2:ENST00000553070.5:ENST00000553198.1	protein_coding	protein_coding	protein_coding	protein_coding	23	177	2	1.74127	1.88955	2.03783	0.0030104	8.93482e-4	0.0506889	0.0275812
chr8	129456896	129456996	4059843	0	-	0.33	(0.32,0.35]	chr8	369600	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1:ENST00000676273.1:ENST00000667643.1:ENST00000668791.1:ENST00000663716.1:ENST00000663572.1:ENST00000676148.1:ENST00000667962.1:ENST00000674877.1:ENST00000675316.1:ENST00000674656.1:ENST00000446592.7:ENST00000667341.1:ENST00000675186.1:ENST00000652971.1:ENST00000661447.1:ENST00000674863.1:ENST00000675498.1:ENST00000675527.1:ENST00000676108.1:ENST00000657647.1:ENST00000675589.1:ENST00000675913.1:ENST00000675109.1:ENST00000671632.1:ENST00000671311.1:ENST00000676099.1:ENST00000660652.1:ENST00000675522.1:ENST00000675183.1:ENST00000658861.1:ENST00000663991.1:ENST00000675044.1:ENST00000675435.1:ENST00000674639.1:ENST00000676069.1:ENST00000675532.1:ENST00000674762.1:ENST00000523151.6:ENST00000675948.1:ENST00000665364.1:ENST00000657251.1:ENST00000675166.1:ENST00000674883.1:ENST00000675867.1:ENST00000674580.1:ENST00000675393.1:ENST00000520048.1:ENST00000674906.1:ENST00000676030.1:ENST00000670588.1:ENST00000675072.1:ENST00000664936.1:ENST00000652914.1:ENST00000657069.1	lncRNA	lncRNA	lncRNA	lncRNA	17	184	2	1.73447	1.88938	2.04429	0.00676377	0.00304376	0.0741642	0.0493883
chr22	23200251	23200351	7483404	0	+	0.42	(0.408,0.44]	chr22	763541	5	INTRON	INTRON	BCR	ENSG00000186716.21	ENST00000479188.5:ENST00000359540.7:ENST00000305877.13:ENST00000463770.5:ENST00000487679.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	15	132	2	1.30303	1.8892799999999998	2.47553	0.0307142	8.63273e-4	0.143385	0.0268312
chr4	39714361	39714460	1953154	0	+	0.434343	(0.408,0.44]	chr4	195630	156	INTRON	INTRON	UBE2K	ENSG00000078140.14	ENST00000510934.5:ENST00000261427.10:ENST00000438068.6:ENST00000513231.5:ENST00000503368.5:ENST00000445950.2:ENST00000510719.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	10	92	2	1.65543	1.88923	2.12303	0.0193369	0.00586883	0.108861	0.0690758
chr1	66943973	66944072	139631	0	+	0.252525	[0,0.28]	chr1	15656	34	INTRON	INTRON	MIER1	ENSG00000198160.15	ENST00000355977.10:ENST00000371018.7:ENST00000357692.6:ENST00000371016.5:ENST00000371014.5:ENST00000371012.6:ENST00000401041.6:ENST00000355356.3:ENST00000401042.7:ENST00000479067.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	60	2	1.56918	1.8892250000000002	2.20927	0.0794763	0.0481076	0.19979	0.171525
chr16	21878538	21878638	6462029	0	-	0.31	(0.28,0.32]	chr16	623467	124	INTRON	INTRON	NPIPB4	ENSG00000185864.18	ENST00000543449.1:ENST00000538859.1	protein_coding	processed_transcript	protein_coding	processed_transcript	19	223	2	1.81545	1.889175	1.9629	0.00435826	0.00420608	0.060356	0.0572185
chr16	14935708	14935802	6304944	0	+	0.404255	(0.378,0.408]	chr16	603198	1	SS5_PROX	SS5_PROX:INTRON	NPIPA1	ENSG00000183426.17	ENST00000472413.5:ENST00000541836.5	protein_coding	processed_transcript	protein_coding	processed_transcript	6	59	2	1.68393	1.8889749999999998	2.09402	0.0503034	0.0126438	0.156383	0.0982897
chr3	41211664	41211763	1403146	0	+	0.393939	(0.378,0.408]	chr3	147417	109	INTRON	INTRON	CTNNB1	ENSG00000168036.18	ENST00000643541.1:ENST00000426215.5:ENST00000645210.1:ENST00000646381.1:ENST00000405570.6:ENST00000642248.1:ENST00000433400.6:ENST00000642992.1:ENST00000431914.6:ENST00000642836.1:ENST00000396185.8:ENST00000642986.1:ENST00000644678.1:ENST00000643031.1:ENST00000396183.7:ENST00000645982.1:ENST00000453024.6:ENST00000645900.1:ENST00000647264.1:ENST00000646174.1:ENST00000643992.1:ENST00000642886.1:ENST00000647390.1:ENST00000643052.1:ENST00000488914.2:ENST00000349496.11:ENST00000642426.1:ENST00000646074.1:ENST00000645276.1:ENST00000644138.1:ENST00000646116.1:ENST00000644873.1:ENST00000643865.1:ENST00000644867.1:ENST00000646725.1:ENST00000645493.1:ENST00000646369.1:ENST00000643977.1:ENST00000647413.1:ENST00000644524.1:ENST00000645305.1:ENST00000643297.1:ENST00000450969.6:ENST00000642315.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	56	2	1.66594	1.88894	2.11194	0.0320222	0.0292534	0.144995	0.128055
chr7	111284393	111284493	3621326	0	-	0.4	(0.378,0.408]	chr7	337093	3205	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	59	2	1.73164	1.88893	2.04622	0.0441773	0.0149927	0.149888	0.107704
chr7	119653568	119653668	3627872	0	-	0.43	(0.408,0.44]	chr7	337315	1531	INTRON	INTRON	LINC02476	ENSG00000225546.6	ENST00000660268.1	lncRNA	lncRNA	lncRNA	lncRNA	12	119	2	1.49971	1.8889049999999998	2.2781	0.0298505	0.00141839	0.142135	0.0340865
chr10	125062124	125062224	4713350	0	-	0.57	(0.515,0.57]	chr10	434897	226	INTRON	INTRON	CTBP2	ENSG00000175029.17	ENST00000337195.9:ENST00000411419.6:ENST00000494626.6:ENST00000531469.5:ENST00000460976.5:ENST00000476817.1:ENST00000530884.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	71	2	1.77301	1.8888449999999999	2.00468	0.0166344	0.0109049	0.110511	0.0873034
chr2	107723746	107723846	1205787	0	-	0.27	[0,0.28]	chr2	128532	61	INTRON	INTRON	LINC01885:ENSG00000286769	ENSG00000237880.2:ENSG00000286769.1	ENST00000654481.1:ENST00000669817.1	lncRNA	lncRNA	lncRNA	lncRNA	6	79	2	1.64178	1.8887399999999999	2.1357	0.0390996	0.0338175	0.161325	0.134476
chr7	150266653	150266753	3673081	0	-	0.29	(0.28,0.32]	chr7	340876	172	INTRON	INTRON	ACTR3C	ENSG00000106526.11	ENST00000478393.5:ENST00000683684.1:ENST00000252071.8	protein_coding	protein_coding	protein_coding	protein_coding	6	69	2	1.51776	1.888575	2.25939	0.0528371	0.021772	0.178899	0.11491
chr22	31957332	31957422	7507028	0	+	0.3	(0.28,0.32]	chr22	766161	7	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	YWHAH	ENSG00000128245.15	ENST00000397492.1:ENST00000248975.6:ENST00000471374.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	149	2	1.43078	1.88856	2.34634	0.0347661	0.00156493	0.137259	0.0365263
chr1	32836695	32836792	66761	0	+	0.453608	(0.44,0.476]	chr1	8568	20	EXON_LNCRNA	EXON_LNCRNA:INTRON	S100PBP	ENSG00000116497.18	ENST00000373476.5:ENST00000531123.5:ENST00000356689.7:ENST00000373475.10	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	39	2	1.77101	1.88855	2.00609	0.0693975	0.0360127	0.184298	0.152355
chr19	14471001	14471101	7024783	0	+	0.46	(0.44,0.476]	chr19	698945	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PKN1	ENSG00000123143.13	ENST00000242783.11:ENST00000585839.5:ENST00000342216.8:ENST00000586237.1:ENST00000591461.1:ENST00000586039.1:ENST00000592960.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	39	2	1.77101	1.88855	2.00609	0.0693975	0.0360127	0.184298	0.152355
chr20	50615701	50615801	7354678	0	-	0.46	(0.44,0.476]	chr20	750044	3	SS5_PROX	SS5_PROX:INTRON	RIPOR3	ENSG00000042062.13	ENST00000327979.8:ENST00000045083.6:ENST00000462493.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	39	2	1.77101	1.88855	2.00609	0.0693975	0.0360127	0.184298	0.152355
chr4	776458	776557	2093363	0	-	0.464646	(0.44,0.476]	chr4	206823	85	INTRON	INTRON	ENSG00000249592	ENSG00000249592.7	ENST00000660016.1:ENST00000665579.1:ENST00000503571.5:ENST00000652800.1:ENST00000507446.1	lncRNA	lncRNA	lncRNA	lncRNA	6	57	2	1.87325	1.88853	1.90381	0.0265709	0.0260626	0.134088	0.122153
chr16	31186514	31186610	6340624	0	+	0.333333	(0.32,0.35]	chr16	608337	15	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	FUS	ENSG00000089280.19	ENST00000566605.5:ENST00000254108.12:ENST00000380244.7:ENST00000487509.6:ENST00000568685.1:ENST00000570090.1:ENST00000474990.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	29	276	2	1.24644	1.8885200000000002	2.5306	0.0197224	2.95258e-4	0.120152	0.0159581
chr20	35708192	35708292	7336194	0	-	0.3	(0.28,0.32]	chr20	747408	2	SS3_PROX	SS3_PROX:INTRON	RBM39	ENSG00000131051.24	ENST00000253363.11:ENST00000639702.1:ENST00000656873.1:ENST00000463004.5:ENST00000361162.10:ENST00000461283.5:ENST00000403542.6:ENST00000338163.10:ENST00000528062.7:ENST00000429968.5:ENST00000444878.5:ENST00000665058.1:ENST00000476806.5:ENST00000495293.5:ENST00000492779.5:ENST00000465158.5:ENST00000448303.5:ENST00000470563.5:ENST00000615771.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	109	2	1.49208	1.888495	2.28491	0.027333	0.0091216	0.136498	0.0811564
chr7	73454272	73454371	3554404	0	-	0.363636	(0.35,0.378]	chr7	330741	29	INTRON	INTRON	BAZ1B	ENSG00000009954.11	ENST00000339594.9:ENST00000404251.1	protein_coding	protein_coding	protein_coding	protein_coding	8	79	2	1.78333	1.88842	1.99351	0.020841	0.0148511	0.111648	0.106937
chr12	56342292	56342392	5334675	0	-	0.46	(0.44,0.476]	chr12	509746	8	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	STAT2	ENSG00000170581.14	ENST00000314128.9:ENST00000556539.5:ENST00000651301.1:ENST00000651915.1:ENST00000651934.1:ENST00000652091.1:ENST00000651805.1:ENST00000651078.1:ENST00000650805.1:ENST00000652741.1:ENST00000652624.1:ENST00000556140.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	47	2	1.69402	1.888395	2.08277	0.0456129	0.0309998	0.164236	0.13151
chr6	31835555	31835634	2843838	0	+	0.518987	(0.515,0.57]	chr6	267907	1	SS5_PROX	SS5_PROX:INTRON	SNHG32	ENSG00000204387.14	ENST00000375640.7:ENST00000375641.6:ENST00000375635.6:ENST00000375638.7:ENST00000648677.1:ENST00000375642.6:ENST00000614363.4:ENST00000395789.5:ENST00000375633.5	lncRNA	lncRNA	lncRNA	lncRNA	98	742	2	1.81423	1.8883649999999998	1.9625	3.07791e-4	1.09336e-4	0.0161496	0.00884858
chr10	131980272	131980370	4715881	0	-	0.357143	(0.35,0.378]	chr10	435218	60	INTRON	INTRON	BNIP3	ENSG00000176171.12	ENST00000368636.9:ENST00000540159.4:ENST00000633835.2:ENST00000631806.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	62	2	1.70607	1.88828	2.07049	0.0482819	0.0140397	0.153283	0.102801
chr16	85468303	85468402	6414513	0	+	0.464646	(0.44,0.476]	chr16	615465	1090	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	5	43	2	1.38039	1.8882150000000002	2.39604	0.0762718	0.0404291	0.195539	0.161534
chr14	101792759	101792858	5818807	0	+	0.363636	(0.35,0.378]	chr14	551829	30	INTRON	INTRON	PPP2R5C	ENSG00000078304.20	ENST00000694906.1:ENST00000422945.6:ENST00000554442.5:ENST00000556068.5:ENST00000328724.9:ENST00000554504.1:ENST00000553890.1:ENST00000553554.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	105	2	1.31041	1.887995	2.46558	0.034956	0.00387127	0.149246	0.0543569
chr15	72478111	72478210	6059198	0	+	0.464646	(0.44,0.476]	chr15	576852	27	INTRON	INTRON	ARIH1	ENSG00000166233.15	ENST00000379887.9:ENST00000570085.5:ENST00000564062.1:ENST00000567762.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	65	2	1.42812	1.8879350000000001	2.34775	0.0673866	0.00466011	0.183355	0.0629753
chr16	2265163	2265250	6431672	0	-	0.390805	(0.378,0.408]	chr16	618814	7	UTR5	UTR5:EXON_MRNA:SS3_PROX:INTRON	RNPS1	ENSG00000205937.12	ENST00000397086.6:ENST00000566458.5:ENST00000320225.10:ENST00000565678.5:ENST00000561718.5:ENST00000568631.5:ENST00000569598.6:ENST00000301730.12:ENST00000567147.5:ENST00000565870.5:ENST00000561518.5:ENST00000564311.5:ENST00000570051.5:ENST00000564601.5:ENST00000564764.5:ENST00000566180.5:ENST00000562690.5:ENST00000569709.5:ENST00000565333.5:ENST00000565589.5:ENST00000564822.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	95	2	1.57136	1.8878400000000002	2.20432	0.0233757	0.00529064	0.128037	0.0636343
chr18	23481670	23481768	6883822	0	+	0.418367	(0.408,0.44]	chr18	682228	5	UTR3	UTR3:EXON_MRNA:INTRON	RIOK3	ENSG00000101782.15	ENST00000339486.8:ENST00000581302.5:ENST00000577250.1:ENST00000581220.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	11	98	2	1.79845	1.8878300000000001	1.97721	0.0121661	0.0071196	0.0910127	0.0756118
chr7	128589556	128589656	3407944	0	+	0.28	[0,0.28]	chr7	318358	91	INTRON	INTRON	ENSG00000280828:ENSG00000242588	ENSG00000280828.1:ENSG00000242588.6	ENST00000479267.2:ENST00000605862.5	lncRNA	lncRNA	lncRNA:unprocessed_pseudogene	lncRNA:unprocessed_pseudogene	5	69	2	1.85666	1.88782	1.91898	0.0660997	0.0266433	0.181924	0.134413
chr16	29578113	29578213	6471381	0	-	0.44	(0.408,0.44]	chr16	625297	84	INTRON	INTRON	ENSG00000288632:SMG1P2	ENSG00000288632.1:ENSG00000205534.6	ENST00000675579.1:ENST00000566127.1	lncRNA	lncRNA	lncRNA:transcribed_unprocessed_pseudogene	lncRNA:transcribed_unprocessed_pseudogene	11	101	2	1.54382	1.887715	2.23161	0.0284747	0.00206564	0.12666	0.04217
chr2	61491448	61491534	1130729	0	-	0.372093	(0.35,0.378]	chr2	121549	3	INTRON	INTRON	XPO1	ENSG00000082898.19	ENST00000677110.1:ENST00000678113.1:ENST00000676553.1:ENST00000677556.1:ENST00000677814.1:ENST00000676771.1:ENST00000677803.1:ENST00000677239.1:ENST00000678790.1:ENST00000677928.1:ENST00000678182.1:ENST00000677150.1:ENST00000678172.1:ENST00000678360.1:ENST00000678081.1:ENST00000676889.1:ENST00000676783.1:ENST00000679035.1:ENST00000677422.1:ENST00000677417.1:ENST00000677813.1:ENST00000676999.1:ENST00000676667.1:ENST00000678263.1:ENST00000678877.1:ENST00000677933.1:ENST00000680228.1:ENST00000677289.1:ENST00000677190.1:ENST00000481073.6:ENST00000677476.1:ENST00000469337.2:ENST00000401558.7:ENST00000428210.5:ENST00000677290.1:ENST00000677850.1:ENST00000676778.1:ENST00000451765.6:ENST00000676789.1:ENST00000678741.1:ENST00000404992.6:ENST00000406957.5:ENST00000677157.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	71	2	1.81955	1.88767	1.95579	0.0234538	0.0194679	0.11986	0.11867
chr7	100317721	100317821	3586585	0	-	0.45	(0.44,0.476]	chr7	334330	166	INTRON	INTRON	PMS2P1	ENSG00000078319.11	ENST00000685724.1:ENST00000692351.1:ENST00000685541.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	6	54	2	1.43625	1.88762	2.33899	0.063142	0.0142027	0.197183	0.0959987
chr7	102124728	102124827	3369449	0	+	0.343434	(0.32,0.35]	chr7	315269	91	INTRON	INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000560541.5:ENST00000558836.5:ENST00000465461.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	55	2	1.83315	1.887585	1.94202	0.0486128	0.0313348	0.153946	0.144381
chr10	48315053	48315152	4431072	0	+	0.343434	(0.32,0.35]	chr10	408563	64	INTRON	INTRON	MAPK8	ENSG00000107643.17	ENST00000395611.7:ENST00000432379.5:ENST00000374189.6:ENST00000429041.6:ENST00000374179.8:ENST00000426557.5:ENST00000476134.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	55	2	1.78201	1.88754	1.99307	0.04271	0.0365003	0.153759	0.148082
chr17	47151008	47151107	6788994	0	-	0.323232	(0.32,0.35]	chr17	669573	67	INTRON	INTRON	CDC27	ENSG00000004897.12	ENST00000066544.8:ENST00000531206.5:ENST00000533415.5:ENST00000527547.5:ENST00000526866.5:ENST00000525495.6:ENST00000574304.5:ENST00000575830.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	55	2	1.78201	1.88754	1.99307	0.04271	0.0365003	0.153759	0.148082
chr7	10497438	10497538	3481753	0	-	0.35	(0.32,0.35]	chr7	325766	443	INTRON	INTRON	MGC4859	ENSG00000283117.1	ENST00000634803.1	lncRNA	lncRNA	lncRNA	lncRNA	5	55	2	1.78201	1.88754	1.99307	0.04271	0.0365003	0.153759	0.148082
chr22	19894942	19895037	7555840	0	-	0.368421	(0.35,0.378]	chr22	772498	12	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	TXNRD2	ENSG00000184470.21	ENST00000400518.5:ENST00000542719.6:ENST00000494454.5:ENST00000474308.5:ENST00000400525.6:ENST00000400521.7:ENST00000400519.6:ENST00000634537.1:ENST00000635155.1:ENST00000491939.6:ENST00000334363.14:ENST00000475995.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:non_stop_decay:nonsense_mediated_decay:processed_transcript	6	62	2	1.75081	1.887525	2.02424	0.0427459	0.0164934	0.148082	0.110301
chrX	303061	303159	7605489	0	+	0.489796	(0.476,0.515]	chrX	779420	39	UTR3	UTR3:EXON_MRNA	PLCXD1	ENSG00000182378.15	ENST00000399012.6:ENST00000381657.8	protein_coding	protein_coding	protein_coding	protein_coding	10	92	2	1.55865	1.88752	2.21639	0.034348	0.00224357	0.135807	0.0435144
chr1	17439610	17439677	384988	0	-	0.462687	(0.44,0.476]	chr1	45504	2	UTR5	UTR5:EXON_MRNA	RCC2	ENSG00000179051.14	ENST00000375436.9	protein_coding	protein_coding	protein_coding	protein_coding	9	84	2	1.84794	1.8874900000000001	1.92704	0.0128054	0.0127847	0.0990564	0.0926667
chr16	22496699	22496798	6322572	0	+	0.515152	(0.476,0.515]	chr16	605439	45	INTRON	INTRON	NPIPB5	ENSG00000243716.11	ENST00000415654.5:ENST00000415833.6:ENST00000546168.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	30	267	2	1.75713	1.8874250000000001	2.01772	0.00216601	9.44836e-4	0.0417866	0.0281759
chr6	8081624	8081724	3054647	0	-	0.33	(0.32,0.35]	chr6	284122	12	INTRON	INTRON	EEF1E1	ENSG00000124802.12	ENST00000429723.6:ENST00000502429.5:ENST00000379715.10	protein_coding	protein_coding	protein_coding	protein_coding	11	118	2	1.84461	1.887415	1.93022	0.0150305	0.00608869	0.0994339	0.0705469
chr1	109313743	109313843	520151	0	-	0.33	(0.32,0.35]	chr1	61085	43	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	SORT1	ENSG00000134243.12	ENST00000538502.5:ENST00000256637.8:ENST00000485149.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	63	2	1.63843	1.887315	2.1362	0.0360919	0.0291083	0.152563	0.128029
chr6	34671335	34671435	3085965	0	-	0.42	(0.408,0.44]	chr6	288693	1	SS5_PROX	SS5_PROX:INTRON	ILRUN	ENSG00000196821.10	ENST00000374026.7:ENST00000374023.8:ENST00000374021.1	protein_coding	protein_coding	protein_coding	protein_coding	6	48	2	1.58622	1.887145	2.18807	0.0708044	0.0291748	0.184528	0.141552
chr9	125236011	125236107	4352443	0	-	0.458333	(0.44,0.476]	chr9	399593	13	UTR3	UTR3:EXON_MRNA	HSPA5	ENSG00000044574.9	ENST00000324460.7:ENST00000680257.1:ENST00000679355.1:ENST00000681045.1:ENST00000681424.1:ENST00000681675.1:ENST00000681544.1:ENST00000680272.1:ENST00000679475.1:ENST00000680494.1:ENST00000681774.1:ENST00000680640.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	17	141	2	1.226	1.88706	2.54812	0.0376731	4.00243e-4	0.140624	0.0179738
chr12	132797481	132797571	5449894	0	-	0.5	(0.476,0.515]	chr12	522055	4	INTRON	INTRON	GOLGA3	ENSG00000090615.16	ENST00000204726.9:ENST00000450791.8:ENST00000693666.1:ENST00000688114.1:ENST00000687190.1:ENST00000690511.1:ENST00000685283.1:ENST00000691696.1:ENST00000691636.1:ENST00000690897.1:ENST00000690465.1:ENST00000456883.7:ENST00000692253.1:ENST00000687502.1:ENST00000688772.1:ENST00000687479.1:ENST00000690709.1:ENST00000545875.4:ENST00000688251.1:ENST00000690573.1:ENST00000685195.1:ENST00000686425.1:ENST00000693437.1:ENST00000692831.1:ENST00000688068.1:ENST00000692951.1:ENST00000689441.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	72	2	1.84346	1.887025	1.93059	0.023762	0.0114152	0.118822	0.095586
chr21	14759843	14759943	7430189	0	-	0.29	(0.28,0.32]	chr21	757888	54	INTRON	INTRON	ENSG00000232884	ENSG00000232884.10	ENST00000673788.1:ENST00000674136.1	lncRNA	lncRNA	lncRNA	lncRNA	8	96	2	1.64432	1.88702	2.12972	0.0606133	0.00413957	0.171142	0.0588921
chr16	9110109	9110208	6285557	0	+	0.393939	(0.378,0.408]	chr16	601929	70	UTR3	UTR3:EXON_MRNA:INTRON	C16orf72	ENSG00000182831.12	ENST00000327827.12:ENST00000574285.2	protein_coding	protein_coding	protein_coding	protein_coding	31	272	2	1.83591	1.8870049999999998	1.9381	0.00323256	7.88022e-4	0.0507196	0.0258324
chr1	26698639	26698739	51197	0	+	0.35	(0.32,0.35]	chr1	6542	7	INTRON	INTRON	ARID1A	ENSG00000117713.21	ENST00000430799.7:ENST00000324856.13:ENST00000637465.1:ENST00000457599.6	protein_coding	protein_coding	protein_coding	protein_coding	12	123	2	1.80021	1.8869950000000002	1.97378	0.0140469	0.00620439	0.0959618	0.0716222
chr4	151099623	151099652	2065034	0	+	0.62069	(0.57,1]	chr4	204367	1	UTR5	UTR5:EXON_MRNA	RPS3A	ENSG00000145425.10	ENST00000509736.5:ENST00000274065.9:ENST00000507485.1:ENST00000505243.5:ENST00000514682.5:ENST00000515818.5:ENST00000503002.5:ENST00000512690.5:ENST00000508783.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	33	2	1.86974	1.8869699999999998	1.9042	0.0476976	0.00983148	0.153019	0.0877296
chr1	70420090	70420188	143024	0	+	0.530612	(0.515,0.57]	chr1	16071	17	INTRON	INTRON	CTH	ENSG00000116761.12	ENST00000411986.6:ENST00000370938.8:ENST00000464926.1:ENST00000346806.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	42	2	1.64415	1.88693	2.12971	0.0757903	0.0231656	0.194427	0.127036
chr1	168012982	168013082	249262	0	+	0.31	(0.28,0.32]	chr1	29602	78	INTRON	INTRON	DCAF6	ENSG00000143164.16	ENST00000432587.6:ENST00000367843.7:ENST00000470721.5:ENST00000367840.4:ENST00000312263.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	14	150	2	1.64128	1.88693	2.13258	0.00937974	0.00884547	0.0860087	0.0794248
chr1	93134891	93134989	163118	0	+	0.316327	(0.28,0.32]	chr1	17638	3	INTRON	INTRON	MTF2	ENSG00000143033.18	ENST00000540243.5:ENST00000545708.5:ENST00000370298.9:ENST00000471953.5:ENST00000370303.4:ENST00000467953.5:ENST00000476037.5:ENST00000489480.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	60	2	1.85772	1.8869150000000001	1.91611	0.0539102	0.0300199	0.164153	0.142135
chr3	42614774	42614874	1406113	0	+	0.29	(0.28,0.32]	chr3	147655	37	INTRON	INTRON	NKTR	ENSG00000114857.19	ENST00000468735.6:ENST00000487466.5:ENST00000429888.5:ENST00000232978.13:ENST00000442970.5:ENST00000445842.1:ENST00000478488.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	60	2	1.85772	1.8869150000000001	1.91611	0.0539102	0.0300199	0.164153	0.142135
chr3	196492380	196492480	1899909	0	-	0.31	(0.28,0.32]	chr3	190261	33	INTRON	INTRON	RNF168	ENSG00000163961.4	ENST00000318037.3:ENST00000437070.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	60	2	1.85772	1.8869150000000001	1.91611	0.0539102	0.0300199	0.164153	0.142135
chr12	53033010	53033108	5141695	0	+	0.459184	(0.44,0.476]	chr12	485029	45	INTRON	INTRON	EIF4B	ENSG00000063046.18	ENST00000262056.14:ENST00000420463.7:ENST00000416762.7:ENST00000550704.5:ENST00000549481.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	79	2	1.41932	1.88689	2.35446	0.0391653	0.00536475	0.161534	0.0642754
chr5	104154895	104154995	2441964	0	+	0.33	(0.32,0.35]	chr5	234410	496	INTRON	INTRON	LINC02163	ENSG00000251026.2	ENST00000662211.1:ENST00000666145.1	lncRNA	lncRNA	lncRNA	lncRNA	4	46	2	1.88468	1.886885	1.88909	0.0553737	0.0515071	0.176696	0.165463
chr9	92253550	92253648	4286921	0	-	0.397959	(0.378,0.408]	chr9	394155	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	IARS1	ENSG00000196305.19	ENST00000375643.7:ENST00000443024.7:ENST00000447699.7:ENST00000683537.1:ENST00000684726.1:ENST00000683192.1:ENST00000683565.1:ENST00000682756.1:ENST00000684542.1:ENST00000683793.1:ENST00000683817.1:ENST00000682141.1:ENST00000682893.1:ENST00000684557.1:ENST00000498025.2:ENST00000682156.1:ENST00000683017.1:ENST00000627121.3:ENST00000683469.1:ENST00000683495.1:ENST00000682578.1:ENST00000682533.1:ENST00000472894.2:ENST00000684757.1:ENST00000684445.1:ENST00000683376.1:ENST00000683679.1:ENST00000683119.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	22	199	2	1.82159	1.886865	1.95214	0.00374901	0.00178217	0.0537943	0.0392749
chr9	133251629	133251727	4369786	0	-	0.336735	(0.32,0.35]	chr9	402031	19	EXON_LNCRNA	EXON_LNCRNA:SS3_PROX:INTRON	ABO	ENSG00000175164.16	ENST00000679909.1:ENST00000680600.1:ENST00000453660.4:ENST00000647353.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	142	2	1.66735	1.8868550000000002	2.10636	0.0135492	0.00397774	0.101363	0.0549214
chr1	28890291	28890391	58711	0	+	0.52	(0.515,0.57]	chr1	7613	27	INTRON	INTRON	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000647918.1:ENST00000646800.1:ENST00000644342.1:ENST00000646189.1:ENST00000482464.6:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	11	77	2	1.40962	1.88681	2.364	0.0264099	0.00447856	0.133676	0.0593175
chr3	73003843	73003943	1452024	0	+	0.54	(0.515,0.57]	chr3	152951	53	INTRON	INTRON	PPP4R2	ENSG00000163605.15	ENST00000482242.5:ENST00000356692.10:ENST00000470976.1:ENST00000488810.5:ENST00000495566.1:ENST00000476505.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	67	2	1.48827	1.886805	2.28534	0.0301583	0.0061678	0.142572	0.067653
chr7	101831269	101831369	3366501	0	+	0.46	(0.44,0.476]	chr7	315215	119	INTRON	INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000497815.5:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000607092.1:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000558469.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	72	2	1.78423	1.8868049999999998	1.98938	0.0198602	0.0143065	0.109608	0.104058
chr5	79618191	79618283	2398783	0	+	0.391304	(0.378,0.408]	chr5	231687	2	INTRON	INTRON	TENT2	ENSG00000164329.14	ENST00000505571.5:ENST00000423041.6:ENST00000504233.5:ENST00000453514.6:ENST00000428308.6:ENST00000515807.5:ENST00000296783.7:ENST00000514095.5:ENST00000508620.5:ENST00000503620.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	20	189	2	1.79254	1.8865	1.98046	0.00451652	0.0018222	0.0595107	0.0396214
chrX	123883031	123883131	7716416	0	+	0.62	(0.57,1]	chrX	789403	221	INTRON	INTRON	XIAP	ENSG00000101966.13	ENST00000422098.5:ENST00000481776.5:ENST00000434753.7:ENST00000497906.5:ENST00000468691.5:ENST00000430625.1:ENST00000371199.8:ENST00000497640.1:ENST00000355640.3:ENST00000468503.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	30	2	1.52865	1.886495	2.24434	0.0730445	0.00677343	0.189414	0.074225
chr16	69992410	69992510	6508960	0	-	0.4	(0.378,0.408]	chr16	630271	1	SS5_PROX	SS5_PROX:INTRON	PDXDC2P-NPIPB14P	ENSG00000196696.13	ENST00000531894.5:ENST00000530079.5:ENST00000525331.6	lncRNA	lncRNA	lncRNA	lncRNA	8	75	2	1.67073	1.886425	2.10212	0.0219426	0.0141232	0.123836	0.0959618
chr22	20951893	20951991	7480864	0	+	0.591837	(0.57,1]	chr22	763101	22	UTR3	UTR3:EXON_MRNA:INTRON	CRKL	ENSG00000099942.13	ENST00000354336.8:ENST00000411769.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	40	174	2	1.64112	1.8861649999999999	2.13121	0.00103702	1.11345e-4	0.0295413	0.00945289
chr7	148868603	148868703	3670606	0	-	0.41	(0.408,0.44]	chr7	340628	209	INTRON	INTRON	EZH2	ENSG00000106462.12	ENST00000683292.1:ENST00000320356.7:ENST00000492143.5:ENST00000478654.5:ENST00000350995.6:ENST00000460911.5:ENST00000683744.1:ENST00000682317.1:ENST00000682263.1:ENST00000684300.1:ENST00000476773.5:ENST00000483967.5:ENST00000498186.5:ENST00000483012.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	41	2	1.49523	1.8861050000000001	2.27698	0.0583528	0.0534846	0.180041	0.167723
chr2	157273005	157273105	896671	0	+	0.36	(0.35,0.378]	chr2	99276	131	INTRON	INTRON	GALNT5	ENSG00000136542.9	ENST00000259056.5	protein_coding	protein_coding	protein_coding	protein_coding	7	71	2	1.49028	1.88605	2.28182	0.0590834	0.00637232	0.168067	0.0724821
chr3	198207663	198207763	1600240	0	+	0.37	(0.35,0.378]	chr3	165898	83	INTRON	INTRON	FAM157A	ENSG00000236438.7	ENST00000634862.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	7	71	2	1.49028	1.88605	2.28182	0.0590834	0.00637232	0.168067	0.0724821
chr19	57822142	57822241	7105747	0	+	0.444444	(0.44,0.476]	chr19	713201	12	INTRON	INTRON	ENSG00000268750:ZNF587B	ENSG00000268750.7:ENSG00000269343.9	ENST00000597134.5:ENST00000651253.2:ENST00000596498.2:ENST00000593873.6:ENST00000603271.1:ENST00000594328.1:ENST00000598031.1	protein_coding	protein_coding	protein_coding	protein_coding	10	85	2	1.32393	1.886025	2.44812	0.0439888	0.00368597	0.162255	0.0535094
chr21	37078922	37079021	7404877	0	+	0.323232	(0.32,0.35]	chr21	754521	51	INTRON	INTRON	TTC3	ENSG00000182670.14	ENST00000492275.6:ENST00000418766.6:ENST00000485402.5:ENST00000450533.6:ENST00000438055.5:ENST00000696812.1:ENST00000696811.1:ENST00000463216.6:ENST00000481605.6:ENST00000540756.5:ENST00000494243.5:ENST00000399010.5:ENST00000411496.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	63	2	1.68188	1.8859650000000001	2.09005	0.0330483	0.031521	0.144381	0.133816
chrX	9468941	9469041	7618692	0	+	0.43	(0.408,0.44]	chrX	779938	31	INTRON	INTRON	TBL1X	ENSG00000101849.18	ENST00000407597.7:ENST00000380961.5:ENST00000424279.6:ENST00000645353.2:ENST00000422314.5	protein_coding	protein_coding	protein_coding	protein_coding	6	57	2	1.78881	1.885955	1.9831	0.0370259	0.018491	0.139194	0.116694
chr7	135974428	135974528	3649443	0	-	0.47	(0.44,0.476]	chr7	339214	224	INTRON	INTRON	MTPN	ENSG00000105887.11	ENST00000393085.4:ENST00000435723.1	protein_coding	protein_coding	protein_coding	protein_coding	8	73	2	1.44993	1.885885	2.32184	0.045367	0.00609071	0.164236	0.0676501
chr5	69356652	69356751	2636983	0	-	0.383838	(0.378,0.408]	chr5	250479	3	INTRON	INTRON	AK6	ENSG00000085231.14	ENST00000380822.9:ENST00000502819.5:ENST00000380818.7:ENST00000512561.5:ENST00000618980.1	protein_coding	protein_coding	protein_coding	protein_coding	8	78	2	1.63458	1.8858449999999998	2.13711	0.0573057	0.00329758	0.167723	0.0527031
chr4	176331168	176331266	2083214	0	+	0.285714	(0.28,0.32]	chr4	205895	30	UTR3	UTR3:EXON_MRNA	SPCS3	ENSG00000129128.13	ENST00000503362.2	protein_coding	protein_coding	protein_coding	protein_coding	14	166	2	1.44292	1.88575	2.32858	0.0385855	7.38686e-4	0.142656	0.0248401
chr18	36167522	36167622	6891827	0	+	0.32	(0.28,0.32]	chr18	683074	3	SS5_PROX	SS5_PROX:INTRON	ELP2	ENSG00000134759.14	ENST00000351393.10:ENST00000442325.6:ENST00000358232.11:ENST00000423854.6:ENST00000539560.5:ENST00000350494.10:ENST00000542824.5:ENST00000540766.5:ENST00000545302.5:ENST00000541748.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	109	2	1.59385	1.8857050000000002	2.17756	0.0190086	0.0130851	0.118802	0.0934394
chr1	110355375	110355475	182504	0	+	0.33	(0.32,0.35]	chr1	20252	1	SS3_PROX	SS3_PROX:INTRON	LAMTOR5-AS1	ENSG00000224699.10	ENST00000626572.2	lncRNA	lncRNA	lncRNA	lncRNA	5	55	2	1.72898	1.885675	2.04237	0.0425433	0.0375542	0.161951	0.140222
chr5	39026333	39026433	2605167	0	-	0.36	(0.35,0.378]	chr5	247896	48	INTRON	INTRON	RICTOR	ENSG00000164327.13	ENST00000357387.8:ENST00000511516.5:ENST00000296782.9:ENST00000510711.5:ENST00000513566.1:ENST00000514735.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	107	2	1.86346	1.88565	1.90784	0.0165983	0.00565952	0.102621	0.0678837
chr19	35163458	35163556	7054424	0	+	0.438776	(0.408,0.44]	chr19	703823	23	INTRON	INTRON	FXYD5	ENSG00000089327.15	ENST00000543307.5:ENST00000392219.7:ENST00000592290.5:ENST00000590686.5:ENST00000541435.6:ENST00000496493.5:ENST00000342879.7:ENST00000588699.5:ENST00000423817.7:ENST00000591716.6:ENST00000586925.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	67	2	1.21994	1.885485	2.55103	0.076179	0.00587353	0.195346	0.0690758
chr6	68686220	68686320	2886828	0	+	0.34	(0.32,0.35]	chr6	273730	464	INTRON	INTRON	ADGRB3	ENSG00000135298.15	ENST00000370598.6:ENST00000684661.1:ENST00000546190.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	56	2	1.69107	1.8854600000000001	2.07985	0.0517392	0.0303092	0.159306	0.143025
chr1	36144195	36144294	422999	0	-	0.555556	(0.515,0.57]	chr1	51049	33	INTRON	INTRON	TRAPPC3	ENSG00000054116.12	ENST00000617904.4:ENST00000616074.4:ENST00000616395.4:ENST00000373166.8:ENST00000373163.5:ENST00000373162.5:ENST00000469757.1:ENST00000373159.1:ENST00000497251.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	46	2	1.44089	1.88528	2.32967	0.0617046	0.0133671	0.193423	0.0946278
chr11	47766126	47766215	4951405	0	-	0.516854	(0.515,0.57]	chr11	464452	4	INTRON	INTRON	FNBP4	ENSG00000109920.13	ENST00000263773.10:ENST00000534003.5:ENST00000540172.2:ENST00000542975.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	46	2	1.44089	1.88528	2.32967	0.0617046	0.0133671	0.193423	0.0946278
chr7	121154541	121154641	3395314	0	+	0.42	(0.408,0.44]	chr7	317781	45	INTRON	INTRON	CPED1	ENSG00000106034.18	ENST00000310396.10:ENST00000450913.6:ENST00000423795.5:ENST00000466055.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	16	141	2	1.65855	1.885245	2.11194	0.00700776	0.00306831	0.0754576	0.0494933
chr19	11114452	11114547	7017081	0	+	0.452632	(0.44,0.476]	chr19	697473	3	INTRON	INTRON	LDLR	ENSG00000130164.14	ENST00000557933.5:ENST00000558518.6:ENST00000545707.5:ENST00000535915.5:ENST00000455727.6:ENST00000558013.5:ENST00000252444.9:ENST00000559340.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	97	2	1.29601	1.8851900000000001	2.47437	0.0518099	0.00117531	0.159306	0.0316592
chr19	28537676	28537776	7166472	0	-	0.27	[0,0.28]	chr19	724193	25	INTRON	INTRON	ENSG00000283403	ENSG00000283403.1	ENST00000592347.5	lncRNA	lncRNA	lncRNA	lncRNA	19	247	2	1.55582	1.8851900000000001	2.21456	0.0122841	0.00299234	0.0970106	0.0491856
chr20	35735081	35735181	7336482	0	-	0.26	[0,0.28]	chr20	747485	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	RBM39	ENSG00000131051.24	ENST00000253363.11:ENST00000639702.1:ENST00000656873.1:ENST00000463004.5:ENST00000361162.10:ENST00000461283.5:ENST00000403542.6:ENST00000338163.10:ENST00000528062.7:ENST00000429968.5:ENST00000444878.5:ENST00000665058.1:ENST00000374038.7:ENST00000412738.5:ENST00000434927.5:ENST00000425184.5:ENST00000481037.5:ENST00000455343.5:ENST00000416108.5:ENST00000426951.5:ENST00000477334.1:ENST00000442447.5:ENST00000449489.5:ENST00000433027.5:ENST00000487604.1:ENST00000453310.5:ENST00000498280.1:ENST00000416529.5:ENST00000397370.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	13	177	2	1.61807	1.8851449999999998	2.15222	0.0376815	0.00170693	0.140649	0.0381936
chr5	21489328	21489428	2326027	0	+	0.39	(0.378,0.408]	chr5	225028	148	INTRON	INTRON	GUSBP1	ENSG00000183666.18	ENST00000508260.5:ENST00000449061.3:ENST00000685731.1:ENST00000688956.1:ENST00000692922.1:ENST00000686144.1:ENST00000607545.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	5	49	2	1.65821	1.885075	2.11194	0.0506302	0.0292534	0.17547	0.128055
chr7	26209343	26209439	3292443	0	+	0.40625	(0.378,0.408]	chr7	305855	4	INTRON	INTRON	CBX3	ENSG00000122565.19	ENST00000337620.8:ENST00000396386.7:ENST00000409747.5:ENST00000497498.1:ENST00000462165.2:ENST00000481057.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	49	2	1.65821	1.885075	2.11194	0.0506302	0.0292534	0.17547	0.128055
chr7	105070137	105070237	3375190	0	+	0.4	(0.378,0.408]	chr7	315906	12	INTRON	INTRON	KMT2E	ENSG00000005483.22	ENST00000622386.2:ENST00000257745.9:ENST00000334884.9:ENST00000311117.8:ENST00000478990.5:ENST00000495267.5:ENST00000476671.5:ENST00000667857.1:ENST00000482560.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	93	2	1.51	1.8850449999999999	2.26009	0.0188651	0.0137305	0.108861	0.102445
chr12	112082228	112082327	5415157	0	-	0.313131	(0.28,0.32]	chr12	517230	7	INTRON	INTRON	NAA25	ENSG00000111300.10	ENST00000261745.9:ENST00000552527.5:ENST00000549711.5:ENST00000551858.1:ENST00000547133.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	69	2	1.47299	1.8850349999999998	2.29708	0.0597769	0.0195087	0.189982	0.109483
chr8	129472559	129472659	4060000	0	-	0.32	(0.28,0.32]	chr8	369602	153	INTRON	INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1:ENST00000676273.1:ENST00000667643.1:ENST00000668791.1:ENST00000663716.1:ENST00000663572.1:ENST00000676148.1:ENST00000667962.1:ENST00000674877.1:ENST00000675316.1:ENST00000674656.1:ENST00000446592.7:ENST00000667341.1:ENST00000675186.1:ENST00000652971.1:ENST00000661447.1:ENST00000674863.1:ENST00000675498.1:ENST00000675527.1:ENST00000676108.1:ENST00000657647.1:ENST00000675589.1:ENST00000675913.1:ENST00000675109.1:ENST00000671632.1:ENST00000671311.1:ENST00000676099.1:ENST00000660652.1:ENST00000675522.1:ENST00000675183.1:ENST00000658861.1:ENST00000663991.1:ENST00000675044.1:ENST00000675435.1:ENST00000674639.1:ENST00000676069.1:ENST00000675532.1:ENST00000674762.1:ENST00000523151.6:ENST00000675948.1:ENST00000665364.1:ENST00000657251.1:ENST00000675166.1:ENST00000674883.1:ENST00000675867.1:ENST00000674580.1:ENST00000675393.1:ENST00000520048.1:ENST00000674906.1:ENST00000676030.1:ENST00000670588.1:ENST00000675072.1:ENST00000664936.1:ENST00000652914.1:ENST00000657069.1	lncRNA	lncRNA	lncRNA	lncRNA	8	94	2	1.58784	1.8849799999999999	2.18212	0.0369776	0.010265700000000001	0.139194	0.089002
chr7	107170430	107170530	3378369	0	+	0.4	(0.378,0.408]	chr7	316311	3	SS5_PROX	SS5_PROX:INTRON	HBP1	ENSG00000105856.14	ENST00000468410.5:ENST00000478930.5:ENST00000464009.1:ENST00000222574.9:ENST00000468401.1:ENST00000468116.1:ENST00000497535.5:ENST00000485846.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	89	2	1.70456	1.8849550000000002	2.06535	0.0159849	0.0108115	0.101453	0.0920575
chr1	168249527	168249627	250400	0	+	0.45	(0.44,0.476]	chr1	29769	71	UTR3	UTR3:EXON_MRNA	SFT2D2	ENSG00000213064.10	ENST00000271375.7	protein_coding	protein_coding	protein_coding	protein_coding	8	74	2	1.76195	1.8849399999999998	2.00793	0.0252608	0.00937685	0.12011	0.0859966
chr19	36753192	36753291	7175668	0	-	0.444444	(0.44,0.476]	chr19	725130	20	INTRON	INTRON	ZNF850	ENSG00000267041.6	ENST00000589390.5:ENST00000614887.4:ENST00000591344.2	protein_coding	protein_coding	protein_coding	protein_coding	4	39	2	1.83899	1.884915	1.93084	0.0589734	0.0443175	0.167915	0.162302
chr6	24719659	24719759	3070734	0	-	0.54	(0.515,0.57]	chr6	285371	4	SS5_PROX	SS5_PROX:INTRON	C6orf62	ENSG00000112308.13	ENST00000378102.3	protein_coding	protein_coding	protein_coding	protein_coding	18	125	2	1.15983	1.8849	2.60997	0.0374648	3.036e-4	0.156046	0.0161199
chr11	32904612	32904712	4764829	0	+	0.34	(0.32,0.35]	chr11	440609	109	INTRON	INTRON	QSER1	ENSG00000060749.16	ENST00000650167.2:ENST00000399302.7:ENST00000527250.5	protein_coding	protein_coding	protein_coding	protein_coding	15	143	2	1.22668	1.88478	2.54288	0.0389728	0.00151636	0.160909	0.0352794
chr19	36232980	36233079	7057605	0	+	0.292929	(0.28,0.32]	chr19	704670	38	INTRON	INTRON	ZNF146	ENSG00000167635.12	ENST00000456324.5:ENST00000591063.5:ENST00000443387.3:ENST00000586094.5:ENST00000587285.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	50	2	1.86684	1.884735	1.90263	0.0605813	0.0503272	0.17488	0.171122
chr19	47175976	47176075	7084335	0	+	0.292929	(0.28,0.32]	chr19	708798	57	INTRON	INTRON	SAE1	ENSG00000142230.13	ENST00000413379.7:ENST00000270225.12:ENST00000598840.5:ENST00000414294.6:ENST00000660039.1:ENST00000664120.1:ENST00000596995.1:ENST00000392776.3:ENST00000659110.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	50	2	1.86684	1.884735	1.90263	0.0605813	0.0503272	0.17488	0.171122
chr3	143024548	143024648	1529323	0	+	0.33	(0.32,0.35]	chr3	159395	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	U2SURP	ENSG00000163714.18	ENST00000488497.7:ENST00000473835.7:ENST00000493598.6:ENST00000463563.6:ENST00000488587.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	17	173	2	1.59809	1.884735	2.17138	0.00901235	0.0030215	0.0851112	0.0493883
chr1	36288559	36288659	73577	0	+	0.33	(0.32,0.35]	chr1	9392	1	SS3_PROX	SS3_PROX:INTRON	THRAP3	ENSG00000054118.15	ENST00000469141.6:ENST00000648638.1:ENST00000354618.10	protein_coding	protein_coding	protein_coding	protein_coding	6	54	2	1.46273	1.88473	2.30673	0.0584434	0.0451962	0.167723	0.163755
chr1	244669909	244670009	347879	0	+	0.35	(0.32,0.35]	chr1	40357	135	INTRON	INTRON	DESI2	ENSG00000121644.19	ENST00000263831.11:ENST00000302550.16:ENST00000418162.1	protein_coding	protein_coding	protein_coding	protein_coding	9	97	2	1.5565	1.88471	2.21292	0.0383034	0.00445585	0.141858	0.0610799
chr7	119718353	119718453	3628521	0	-	0.34	(0.32,0.35]	chr7	337319	130	INTRON	INTRON	LINC02476	ENSG00000225546.6	ENST00000660268.1:ENST00000431071.5	lncRNA	lncRNA	lncRNA	lncRNA	9	97	2	1.5565	1.88471	2.21292	0.0383034	0.00445585	0.141858	0.0610799
chr22	20939732	20939832	7480741	0	+	0.37	(0.35,0.378]	chr22	763096	51	INTRON	INTRON	CRKL	ENSG00000099942.13	ENST00000354336.8:ENST00000411769.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	28	273	2	1.74283	1.8847	2.02657	0.00538372	4.79216e-4	0.0643149	0.0198519
chr9	96390232	96390330	4295087	0	-	0.316327	(0.28,0.32]	chr9	394952	14	INTRON	INTRON	ZNF367	ENSG00000165244.7	ENST00000375256.5	protein_coding	protein_coding	protein_coding	protein_coding	5	60	2	1.86684	1.884665	1.90249	0.0605813	0.0261803	0.171122	0.133676
chr2	111480068	111480161	1211660	0	-	0.408602	(0.408,0.44]	chr2	128935	1	SSB_ADJ	SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MIR4435-2HG	ENSG00000172965.17	ENST00000645030.2:ENST00000642191.1:ENST00000673798.1:ENST00000645051.2:ENST00000673649.1:ENST00000669658.1:ENST00000669917.1:ENST00000661559.1:ENST00000653687.1:ENST00000667670.1:ENST00000609220.2:ENST00000656760.1:ENST00000609902.6:ENST00000666683.1:ENST00000674070.1:ENST00000662335.1:ENST00000664422.1:ENST00000673775.1:ENST00000674092.1:ENST00000673958.1:ENST00000658936.1:ENST00000662635.1:ENST00000666204.1:ENST00000659458.1:ENST00000664443.1:ENST00000670295.1:ENST00000661655.1:ENST00000666390.1:ENST00000659079.1:ENST00000660442.1:ENST00000664009.1:ENST00000439362.6:ENST00000654473.1:ENST00000664999.1:ENST00000673728.1:ENST00000659791.1:ENST00000666144.1:ENST00000659933.1:ENST00000670715.1:ENST00000653568.1:ENST00000643013.1:ENST00000673866.1:ENST00000443467.6:ENST00000669875.1:ENST00000673653.1:ENST00000673988.1:ENST00000661945.1:ENST00000669515.1:ENST00000431385.6:ENST00000656416.1:ENST00000674037.1:ENST00000432818.5:ENST00000674013.1:ENST00000444301.5:ENST00000673964.1:ENST00000673845.1:ENST00000673756.1:ENST00000673960.1:ENST00000673804.1:ENST00000673632.1:ENST00000453478.2:ENST00000673937.1:ENST00000673654.1:ENST00000409569.2:ENST00000674087.1:ENST00000419736.5:ENST00000673840.1:ENST00000674045.1:ENST00000673821.1:ENST00000643766.1:ENST00000308604.5:ENST00000604981.5:ENST00000673894.1:ENST00000442293.5:ENST00000441075.1:ENST00000673878.1:ENST00000439494.1	lncRNA	lncRNA	lncRNA	lncRNA	14	132	2	1.83931	1.884655	1.93	0.00806984	0.00391201	0.0806514	0.0547773
chr4	126675671	126675771	2237466	0	-	0.3	(0.28,0.32]	chr4	219023	2102	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	6	70	2	1.86684	1.884625	1.90241	0.0605813	0.0157236	0.171122	0.109464
chr11	68495461	68495561	4817680	0	+	0.41	(0.408,0.44]	chr11	448907	343	INTRON	INTRON	PPP6R3	ENSG00000110075.15	ENST00000530427.5:ENST00000528635.5:ENST00000529907.5:ENST00000533127.5:ENST00000534534.5:ENST00000529344.5:ENST00000524845.5:ENST00000393800.7:ENST00000265637.8:ENST00000524904.5:ENST00000393801.7:ENST00000265636.9:ENST00000529710.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	54	2	1.6546400000000001	1.884555	2.11447	0.0329965	0.0285207	0.145298	0.12666
chr8	55780165	55780264	3753857	0	+	0.424242	(0.408,0.44]	chr8	349174	61	INTRON	INTRON	TGS1	ENSG00000137574.11	ENST00000260129.6:ENST00000523948.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	54	2	1.6546400000000001	1.884555	2.11447	0.0329965	0.0285207	0.145298	0.12666
chr2	61289675	61289775	1128703	0	-	0.3	(0.28,0.32]	chr2	121324	4	INTRON	INTRON	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000472706.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	60	2	1.71442	1.8845	2.05458	0.0454351	0.0381508	0.164236	0.141764
chr1	167942632	167942732	248548	0	+	0.28	[0,0.28]	chr1	29536	50	INTRON	INTRON	DCAF6	ENSG00000143164.16	ENST00000450548.5:ENST00000470919.5:ENST00000432587.6:ENST00000367843.7:ENST00000470721.5:ENST00000367840.4:ENST00000312263.10:ENST00000455334.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	12	154	2	1.75732	1.884485	2.01165	0.0156888	0.0094457	0.101453	0.0861711
chr10	56357722	56357821	4621671	0	-	0.40404	(0.378,0.408]	chr10	425544	6	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ZWINT	ENSG00000122952.17	ENST00000373944.8:ENST00000395405.5:ENST00000494312.5:ENST00000318387.6:ENST00000489649.6:ENST00000460654.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	48	2	1.45934	1.8844750000000001	2.30961	0.055088	0.0442931	0.165463	0.162302
chr5	134812045	134812145	2490934	0	+	0.44	(0.408,0.44]	chr5	237983	2	SS5_PROX	SS5_PROX:INTRON	DDX46	ENSG00000145833.16	ENST00000452510.7:ENST00000507392.5:ENST00000354283.8:ENST00000503946.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	54	2	1.55035	1.88446	2.21857	0.0455214	0.0209591	0.164236	0.112046
chr10	6174798	6174898	4386293	0	+	0.39	(0.378,0.408]	chr10	404834	104	INTRON	INTRON	PFKFB3	ENSG00000170525.21	ENST00000379789.8:ENST00000536985.6:ENST00000639949.1	protein_coding	protein_coding	protein_coding	protein_coding	5	49	2	1.53052	1.884415	2.23831	0.0744544	0.0179575	0.192012	0.114265
chr19	21407272	21407372	7040925	0	+	0.39	(0.378,0.408]	chr19	702028	4	SS3_PROX	SS3_PROX:INTRON	ZNF493	ENSG00000196268.12	ENST00000596302.5:ENST00000392288.7:ENST00000355504.4:ENST00000594390.5:ENST00000339914.6:ENST00000598152.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	68	2	1.68393	1.8843649999999998	2.0848	0.0503034	0.00697927	0.156383	0.0754576
chr1	29047240	29047339	60296	0	+	0.424242	(0.408,0.44]	chr1	7705	59	INTRON	INTRON	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000647918.1:ENST00000646800.1:ENST00000644342.1:ENST00000646189.1:ENST00000482464.6:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000646260.1:ENST00000373798.5:ENST00000644600.1:ENST00000649674.1:ENST00000643173.1:ENST00000343067.9:ENST00000644780.1:ENST00000650265.1:ENST00000648181.1:ENST00000643604.1:ENST00000648891.1:ENST00000373797.2:ENST00000349460.9:ENST00000645184.1:ENST00000645111.1:ENST00000643302.1:ENST00000645999.1:ENST00000642643.1:ENST00000636666.1:ENST00000644848.1:ENST00000644470.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	21	170	2	1.6858900000000001	1.884355	2.08282	0.0051355	0.00285019	0.062965	0.0494641
chr1	47346905	47347005	97705	0	+	0.51	(0.476,0.515]	chr1	13138	124	INTRON	INTRON	CMPK1	ENSG00000162368.14	ENST00000371873.10:ENST00000371871.8:ENST00000471289.2:ENST00000450808.2:ENST00000371870.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	41	2	1.53534	1.8843450000000002	2.23335	0.0634557	0.0476737	0.177047	0.170116
chr2	64018737	64018837	1140007	0	-	0.48	(0.476,0.515]	chr2	122047	4	SS5_PROX	SS5_PROX:INTRON	VPS54	ENSG00000143952.20	ENST00000409558.8:ENST00000272322.9	protein_coding	protein_coding	protein_coding	protein_coding	8	74	2	1.58972	1.8843200000000002	2.17892	0.0427022	0.0046578	0.148082	0.0629753
chr6	4054645	4054743	2790043	0	+	0.5	(0.476,0.515]	chr6	263541	14	INTRON	INTRON	PRPF4B	ENSG00000112739.17	ENST00000480058.5:ENST00000337659.11:ENST00000481109.5:ENST00000463634.6:ENST00000466185.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	39	2	1.8388	1.88432	1.92984	0.0564473	0.0466474	0.184423	0.151522
chr5	141588550	141588650	2739884	0	-	0.38	(0.378,0.408]	chr5	258167	3	SS3_PROX	SS3_PROX:INTRON	DIAPH1	ENSG00000131504.18	ENST00000647433.1:ENST00000389054.8:ENST00000518047.5:ENST00000523100.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	59	2	1.58349	1.884305	2.18512	0.0653091	0.00902136	0.180158	0.0851259
chr11	120341069	120341169	4876246	0	+	0.54	(0.515,0.57]	chr11	455798	34	INTRON	INTRON	ARHGEF12	ENSG00000196914.9	ENST00000397843.7:ENST00000356641.7	protein_coding	protein_coding	protein_coding	protein_coding	9	67	2	1.44339	1.8843	2.3252100000000002	0.0352285	0.00525266	0.150284	0.0633615
chr2	135532332	135532432	873961	0	+	0.36	(0.35,0.378]	chr2	97879	3	INTRON	INTRON	R3HDM1	ENSG00000048991.17	ENST00000483021.5:ENST00000463230.5:ENST00000683871.1:ENST00000409478.5:ENST00000264160.8:ENST00000438014.5:ENST00000488035.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	52	2	1.6599	1.884245	2.10859	0.0545616	0.0272722	0.165292	0.136494
chr1	35326801	35326901	68870	0	+	0.38	(0.378,0.408]	chr1	8729	10	INTRON	INTRON	ZMYM4	ENSG00000146463.12	ENST00000314607.11:ENST00000441447.1	protein_coding	protein_coding	protein_coding	protein_coding	6	59	2	1.82258	1.884085	1.94559	0.0341279	0.0211434	0.135102	0.122929
chr7	152431727	152431827	3681251	0	-	0.29	(0.28,0.32]	chr7	341660	727	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000682301.1:ENST00000452749.2:ENST00000680867.1:ENST00000683800.1:ENST00000684278.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	116	2	1.33496	1.8840599999999998	2.43316	0.0618816	0.00186476	0.174514	0.0399675
chr10	73252552	73252622	4649010	0	-	0.585714	(0.57,1]	chr10	427727	2	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	MRPS16	ENSG00000182180.14	ENST00000479005.1:ENST00000372945.8:ENST00000372940.3:ENST00000473427.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	47	2	1.79978	1.88397	1.96816	0.0199509	0.00403305	0.109608	0.0578376
chr10	96134234	96134321	4502237	0	+	0.551724	(0.515,0.57]	chr10	414475	2	INTRON	INTRON	ZNF518A	ENSG00000177853.15	ENST00000614149.2:ENST00000488700.5:ENST00000624776.4:ENST00000539666.5:ENST00000563195.1:ENST00000316045.10	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	51	2	1.49552	1.88395	2.27238	0.0385038	0.0161808	0.159277	0.101453
chr4	34334528	34334628	2125651	0	-	0.4	(0.378,0.408]	chr4	209579	2	SS5_PROX	SS5_PROX:INTRON	LINC02484	ENSG00000248685.6	ENST00000658479.1	lncRNA	lncRNA	lncRNA	lncRNA	6	50	2	1.63086	1.8839450000000002	2.13703	0.0797592	0.0252353	0.19979	0.133676
chr19	28494949	28495049	7166044	0	-	0.42	(0.408,0.44]	chr19	724189	267	INTRON	INTRON	ENSG00000283403:ENSG00000267243	ENSG00000283403.1:ENSG00000267243.6	ENST00000592347.5:ENST00000593065.5	lncRNA	lncRNA	lncRNA	lncRNA	13	116	2	1.30866	1.8839099999999998	2.45916	0.0434157	6.48651e-4	0.14821	0.0230814
chr5	33453712	33453812	2335258	0	+	0.4	(0.378,0.408]	chr5	225436	3	SS5_PROX	SS5_PROX:INTRON	TARS1	ENSG00000113407.14	ENST00000502553.5:ENST00000508361.5:ENST00000265112.8:ENST00000455217.6:ENST00000507716.5:ENST00000509731.5:ENST00000505012.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	87	2	1.82093	1.88387	1.94681	0.0457723	0.00507045	0.149888	0.0646039
chr6	34390263	34390363	3084750	0	-	0.45	(0.44,0.476]	chr6	288633	479	INTRON	INTRON	NUDT3:RPS10-NUDT3	ENSG00000272325.2:ENSG00000270800.3	ENST00000607016.2:ENST00000639725.1:ENST00000639877.1:ENST00000605528.2	protein_coding	protein_coding	protein_coding	protein_coding	13	116	2	1.59359	1.8838300000000001	2.17407	0.0156777	0.00272014	0.101453	0.0481508
chr7	119620577	119620677	3627542	0	-	0.47	(0.44,0.476]	chr7	337315	1201	INTRON	INTRON	LINC02476	ENSG00000225546.6	ENST00000660268.1	lncRNA	lncRNA	lncRNA	lncRNA	7	65	2	1.68545	1.88378	2.08211	0.0322071	0.0130715	0.132543	0.0996047
chr3	6541114	6541214	1356652	0	+	0.51	(0.476,0.515]	chr3	142508	280	INTRON	INTRON	ENSG00000189229	ENSG00000189229.12	ENST00000660158.1:ENST00000433639.1:ENST00000655754.1:ENST00000653839.1:ENST00000662846.1:ENST00000659876.1:ENST00000414438.2:ENST00000658468.1:ENST00000414603.1:ENST00000669512.1:ENST00000667028.1:ENST00000655541.1:ENST00000668643.1:ENST00000671568.1:ENST00000671036.1:ENST00000669798.1:ENST00000655753.1:ENST00000655856.1:ENST00000658398.1:ENST00000661518.1:ENST00000661279.1:ENST00000655495.1:ENST00000663041.1:ENST00000659827.1:ENST00000667716.1:ENST00000662508.1:ENST00000668416.1:ENST00000658133.1:ENST00000659651.1:ENST00000342990.4:ENST00000660054.1:ENST00000671370.1	lncRNA	lncRNA	lncRNA	lncRNA	16	146	2	1.75116	1.88372	2.01628	0.00687667	0.00249305	0.0749442	0.0446195
chr2	158458507	158458607	897155	0	+	0.45	(0.44,0.476]	chr2	99340	2	SS5_PROX	SS5_PROX:INTRON	PKP4	ENSG00000144283.23	ENST00000389759.8:ENST00000426248.7:ENST00000389757.7:ENST00000457109.5:ENST00000452162.5:ENST00000411900.5:ENST00000421462.5:ENST00000462335.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	47	2	1.55662	1.883705	2.21079	0.0688347	0.0194581	0.184298	0.119831
chr20	48958561	48958660	7282952	0	+	0.474747	(0.44,0.476]	chr20	740627	44	INTRON	INTRON	ARFGEF2	ENSG00000124198.10	ENST00000371917.5:ENST00000681399.1:ENST00000679436.1:ENST00000681885.1:ENST00000681021.1:ENST00000680871.1:ENST00000681656.1:ENST00000679542.1:ENST00000680635.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	47	2	1.55662	1.883705	2.21079	0.0688347	0.0194581	0.184298	0.119831
chr2	107741945	107742045	1205969	0	-	0.41	(0.408,0.44]	chr2	128532	243	INTRON	INTRON	LINC01885:ENSG00000286769	ENSG00000237880.2:ENSG00000286769.1	ENST00000654481.1:ENST00000669817.1	lncRNA	lncRNA	lncRNA	lncRNA	15	136	2	1.6786	1.88369	2.08878	0.00953675	0.00260464	0.0820275	0.0470772
chr2	69320765	69320863	1146621	0	-	0.438776	(0.408,0.44]	chr2	122417	11	UTR3	UTR3:EXON_MRNA	GFPT1	ENSG00000198380.13	ENST00000361060.5:ENST00000357308.9	protein_coding	protein_coding	protein_coding	protein_coding	17	153	2	1.73381	1.883565	2.03332	0.0145181	8.5137e-4	0.0977607	0.0264928
chr22	21598856	21598956	7482016	0	+	0.52	(0.515,0.57]	chr22	763238	55	INTRON	INTRON	UBE2L3	ENSG00000185651.16	ENST00000458578.6:ENST00000545681.2:ENST00000696046.1:ENST00000342192.9:ENST00000496722.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	14	108	2	1.62009	1.8834849999999999	2.14688	0.0153663	0.00116191	0.100447	0.0314379
chr21	39285832	39285932	7465261	0	-	0.4	(0.378,0.408]	chr21	760548	52	INTRON	INTRON	BRWD1	ENSG00000185658.14	ENST00000333229.6:ENST00000342449.8:ENST00000380800.7	protein_coding	protein_coding	protein_coding	protein_coding	7	64	2	1.82004	1.883425	1.94681	0.0457723	0.012605	0.149888	0.0980801
chr10	43403926	43404025	4605454	0	-	0.545455	(0.515,0.57]	chr10	424262	67	INTRON	INTRON	HNRNPF	ENSG00000169813.17	ENST00000356053.7:ENST00000357065.8:ENST00000682386.1:ENST00000337970.7	protein_coding	protein_coding	protein_coding	protein_coding	13	100	2	1.82281	1.8833950000000002	1.94398	0.00590835	0.0052852	0.0694038	0.0635894
chr7	97141975	97142073	3357203	0	+	0.244898	[0,0.28]	chr7	313212	52	INTRON	INTRON	SDHAF3	ENSG00000196636.8	ENST00000432641.3:ENST00000489852.1:ENST00000360382.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	96	2	1.69895	1.88337	2.06779	0.0568939	0.0096412	0.167723	0.0870233
chr9	131130265	131130365	4215668	0	+	0.49	(0.476,0.515]	chr9	386521	1	SS3_PROX	SS3_PROX:INTRON	NUP214	ENSG00000126883.19	ENST00000695497.1:ENST00000695498.1:ENST00000695496.1:ENST00000695495.1:ENST00000695494.1:ENST00000695493.1:ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000525561.2:ENST00000651022.1:ENST00000651639.1:ENST00000695499.1:ENST00000526412.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	72	2	1.55865	1.88327	2.20789	0.034348	0.00820497	0.135807	0.081115
chr6	156982012	156982111	3009211	0	+	0.424242	(0.408,0.44]	chr6	281124	383	INTRON	INTRON	ARID1B	ENSG00000049618.24	ENST00000346085.10:ENST00000636930.2:ENST00000647938.1:ENST00000350026.10:ENST00000674298.1:ENST00000674190.1:ENST00000414678.7:ENST00000638000.1:ENST00000319584.11:ENST00000452544.2:ENST00000637887.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	75	2	1.53812	1.883155	2.22819	0.0501609	0.00373083	0.156383	0.0561984
chr18	57618098	57618196	6980673	0	-	0.428571	(0.408,0.44]	chr18	690706	17	INTRON	INTRON	NARS1	ENSG00000134440.12	ENST00000256854.10:ENST00000586807.5:ENST00000411676.6:ENST00000540592.5:ENST00000591599.5:ENST00000587675.5:ENST00000588661.5:ENST00000587194.1:ENST00000590123.1:ENST00000587366.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	65	2	1.87977	1.883135	1.8865	0.0282738	0.0148842	0.125825	0.107116
chr6	33405143	33405241	2847083	0	+	0.612245	(0.57,1]	chr6	268680	4	CDS	CDS:EXON_MRNA	KIFC1	ENSG00000237649.8	ENST00000428849.7	protein_coding	protein_coding	protein_coding	protein_coding	7	34	2	1.37384	1.883025	2.39221	0.0766386	0.00352602	0.196164	0.0546236
chr1	50923380	50923480	451887	0	-	0.41	(0.408,0.44]	chr1	54267	650	INTRON	INTRON	FAF1	ENSG00000185104.21	ENST00000396153.7:ENST00000487898.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	60	2	1.49789	1.882905	2.26792	0.0390091	0.0179973	0.161009	0.106756
chr20	50087443	50087543	7353696	0	-	0.42	(0.408,0.44]	chr20	749863	28	INTRON	INTRON	UBE2V1	ENSG00000244687.13	ENST00000340309.7:ENST00000371677.7:ENST00000415862.6:ENST00000557021.5:ENST00000617119.4:ENST00000625172.3:ENST00000396059.7:ENST00000371674.8:ENST00000371657.9:ENST00000483534.5:ENST00000492371.6:ENST00000486653.5:ENST00000490555.1:ENST00000493090.5:ENST00000467839.5:ENST00000472923.5:ENST00000432266.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	60	2	1.49789	1.882905	2.26792	0.0390091	0.0179973	0.161009	0.106756
chr19	58389878	58389978	7107607	0	+	0.44	(0.408,0.44]	chr19	713447	10	INTRON	INTRON	RPS5	ENSG00000083845.9	ENST00000601521.5:ENST00000596314.5:ENST00000598098.5:ENST00000196551.8:ENST00000598495.5:ENST00000598807.1:ENST00000596046.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	60	2	1.85305	1.88287	1.91269	0.0543543	0.0153219	0.182243	0.100173
chr4	78915774	78915872	1982804	0	+	0.255102	[0,0.28]	chr4	198565	39	UTR3	UTR3:EXON_MRNA	BMP2K	ENSG00000138756.19	ENST00000502613.3	protein_coding	protein_coding	protein_coding	protein_coding	8	110	2	1.83604	1.8828399999999998	1.92964	0.0268337	0.0157154	0.123442	0.109464
chr22	21780968	21781068	7560513	0	-	0.54	(0.515,0.57]	chr22	773360	76	INTRON	INTRON	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	15	115	2	1.80997	1.8826749999999999	1.95538	0.00475864	0.00361448	0.0636201	0.0533855
chr11	989865	989962	4721745	0	+	0.515464	(0.515,0.57]	chr11	436705	8	INTRON	INTRON	AP2A2	ENSG00000183020.15	ENST00000332231.9:ENST00000448903.7:ENST00000529858.6:ENST00000693238.1:ENST00000687890.1:ENST00000687792.1:ENST00000528815.5:ENST00000528195.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	47	2	1.8707	1.88266	1.89462	0.0523213	0.0139002	0.160182	0.10247
chr16	28210100	28210195	6468448	0	-	0.368421	(0.35,0.378]	chr16	624603	6	INTRON	INTRON	XPO6	ENSG00000169180.12	ENST00000304658.10:ENST00000565698.5:ENST00000569951.1:ENST00000566073.1	protein_coding	protein_coding	protein_coding	protein_coding	7	71	2	1.60653	1.88265	2.15877	0.0427748	0.0102036	0.148082	0.089002
chr12	110290726	110290825	5226193	0	+	0.525253	(0.515,0.57]	chr12	495234	76	INTRON	INTRON	ATP2A2	ENSG00000174437.18	ENST00000552636.2:ENST00000308664.10:ENST00000539276.7:ENST00000377685.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	23	176	2	1.5977	1.88259	2.16748	0.00824201	2.48382e-4	0.0773378	0.0139698
chr17	81603169	81603267	6849258	0	-	0.326531	(0.32,0.35]	chr17	678187	24	INTRON	INTRON	NPLOC4	ENSG00000182446.14	ENST00000331134.11:ENST00000374747.9:ENST00000574897.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	76	2	1.53859	1.8825699999999999	2.22655	0.0534261	0.00823133	0.162935	0.0812969
chr1	162599461	162599560	238710	0	+	0.363636	(0.35,0.378]	chr1	28760	2	UTR3	UTR3:EXON_MRNA	UAP1	ENSG00000117143.14	ENST00000367925.6:ENST00000367926.9:ENST00000486089.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	17	154	2	1.35143	1.8825150000000002	2.4136	0.0213712	0.00136305	0.123719	0.0336321
chr21	10440052	10440151	7368395	0	+	0.464646	(0.44,0.476]	chr21	751975	248	INTRON	INTRON	BAGE2	ENSG00000187172.15	ENST00000474011.5:ENST00000470054.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	20	145	2	1.15466	1.882485	2.61031	0.0329014	8.11387e-4	0.145164	0.0263656
chr6	159787242	159787342	3254679	0	-	0.31	(0.28,0.32]	chr6	302542	1	SS5_PROX	SS5_PROX:INTRON	TCP1	ENSG00000120438.12	ENST00000321394.12:ENST00000544255.5:ENST00000420894.6:ENST00000392168.6:ENST00000539756.1:ENST00000543532.5:ENST00000538530.5:ENST00000538128.5:ENST00000543517.5:ENST00000539948.5:ENST00000545764.1:ENST00000537390.5:ENST00000536394.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	13	152	2	1.68939	1.88245	2.07551	0.0172148	0.003536	0.104099	0.0546236
chr22	21427527	21427626	7481274	0	+	0.545455	(0.515,0.57]	chr22	763209	64	INTRON	INTRON	HIC2	ENSG00000169635.10	ENST00000407464.7:ENST00000407598.2	protein_coding	protein_coding	protein_coding	protein_coding	16	107	2	1.21834	1.882445	2.54655	0.0326813	8.595e-4	0.145164	0.0267428
chr5	54070930	54071030	2618515	0	-	0.48	(0.476,0.515]	chr5	248837	228	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	16	145	2	1.79871	1.882395	1.96608	0.00554225	0.00315678	0.0674105	0.0501974
chr20	47242821	47242920	7348359	0	-	0.383838	(0.378,0.408]	chr20	749270	33	INTRON	INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000467200.6:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000468376.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	14	131	2	1.59292	1.882355	2.17179	0.016495	0.00178023	0.102435	0.039274
chr10	68523968	68524067	4640249	0	-	0.565657	(0.515,0.57]	chr10	426805	59	INTRON	INTRON	SLC25A16	ENSG00000122912.15	ENST00000609923.6:ENST00000493963.5:ENST00000491102.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	50	2	1.86007	1.88235	1.90463	0.0526611	0.0141753	0.178401	0.0959618
chr7	23529984	23530084	3503935	0	-	0.37	(0.35,0.378]	chr7	326970	72	INTRON	INTRON	TRA2A	ENSG00000164548.12	ENST00000297071.9:ENST00000392502.8:ENST00000538367.6:ENST00000621813.4:ENST00000494255.5:ENST00000474586.5:ENST00000490942.1:ENST00000448549.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	85	2	1.52819	1.88235	2.23651	0.020879	0.0182094	0.115242	0.111766
chr1	167953957	167954056	248662	0	+	0.414141	(0.408,0.44]	chr1	29542	17	INTRON	INTRON	DCAF6	ENSG00000143164.16	ENST00000450548.5:ENST00000470919.5:ENST00000432587.6:ENST00000367843.7:ENST00000470721.5:ENST00000367840.4:ENST00000312263.10:ENST00000455334.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	15	111	2	1.22435	1.8822450000000002	2.54014	0.0335387	0.00255945	0.146709	0.0450085
chr12	111571775	111571875	5412957	0	-	0.52	(0.515,0.57]	chr12	516941	70	INTRON	INTRON	ATXN2	ENSG00000204842.18	ENST00000642389.2:ENST00000608853.5:ENST00000672613.1:ENST00000673436.1:ENST00000643669.2:ENST00000616825.4:ENST00000389153.10:ENST00000550104.5:ENST00000483311.6:ENST00000672335.1:ENST00000673557.1:ENST00000673283.1:ENST00000673449.1:ENST00000535949.5:ENST00000542287.6:ENST00000644883.1:ENST00000647305.1:ENST00000671792.1:ENST00000392645.6:ENST00000672105.1:ENST00000549455.1:ENST00000548492.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	55	2	1.84511	1.882135	1.91916	0.0231902	0.0167182	0.118148	0.110511
chr19	10655147	10655247	7013219	0	+	0.39	(0.378,0.408]	chr19	696752	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ILF3	ENSG00000129351.17	ENST00000449870.5:ENST00000587928.5:ENST00000407004.7:ENST00000589998.5:ENST00000589600.5:ENST00000589283.5:ENST00000590009.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	73	2	1.28658	1.88205	2.47752	0.0499541	0.0092831	0.17488	0.0817766
chr5	28940079	28940179	2331153	0	+	0.27	[0,0.28]	chr5	225139	129	INTRON	INTRON	LINC02109	ENSG00000259786.7	ENST00000658190.1	lncRNA	lncRNA	lncRNA	lncRNA	5	59	2	1.49274	1.8819649999999999	2.27119	0.070351	0.0592697	0.189982	0.184298
chr12	112028060	112028158	5414585	0	-	0.377551	(0.35,0.378]	chr12	517111	15	UTR3	UTR3:EXON_MRNA	NAA25	ENSG00000111300.10	ENST00000261745.9:ENST00000552527.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	62	2	1.56287	1.8819149999999998	2.20096	0.0697648	0.0087123	0.184298	0.0844834
chr8	102856916	102857015	4013164	0	-	0.353535	(0.35,0.378]	chr8	367334	64	INTRON	INTRON	AZIN1	ENSG00000155096.15	ENST00000681985.1:ENST00000684566.1:ENST00000682725.1:ENST00000337198.10:ENST00000684459.1:ENST00000683787.1:ENST00000682014.1:ENST00000682969.1:ENST00000684721.1:ENST00000683965.1:ENST00000347770.8:ENST00000521536.6:ENST00000520402.5:ENST00000518353.5:ENST00000517581.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	62	2	1.56287	1.8819149999999998	2.20096	0.0697648	0.0087123	0.184298	0.0844834
chr13	110892775	110892859	5650413	0	-	0.428571	(0.408,0.44]	chr13	538341	2	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	ANKRD10	ENSG00000088448.14	ENST00000267339.6:ENST00000485844.1:ENST00000603993.1:ENST00000489973.6:ENST00000310847.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	65	2	1.83501	1.88186	1.92871	0.0323448	0.0127189	0.133003	0.0986242
chr7	151505546	151505646	3674782	0	-	0.34	(0.32,0.35]	chr7	341207	70	INTRON	INTRON	RHEB	ENSG00000106615.10	ENST00000262187.10:ENST00000472642.5:ENST00000478470.5:ENST00000496004.5:ENST00000470370.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	88	2	1.23259	1.8818300000000001	2.53107	0.0530143	0.00860484	0.179488	0.0784134
chr20	13794249	13794337	7242372	0	+	0.397727	(0.378,0.408]	chr20	735276	7	INTRON	INTRON	NDUFAF5	ENSG00000101247.18	ENST00000378081.9:ENST00000378106.10:ENST00000463598.1:ENST00000485738.5:ENST00000477732.5:ENST00000475968.5:ENST00000481249.5:ENST00000476536.5:ENST00000469177.5:ENST00000464269.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	41	2	1.81685	1.88183	1.94681	0.0597868	0.0457723	0.189982	0.149888
chr11	65203172	65203271	4804604	0	+	0.434343	(0.408,0.44]	chr11	446277	141	INTRON	INTRON	CAPN1	ENSG00000014216.16	ENST00000533820.5:ENST00000533129.5:ENST00000524773.5:ENST00000279247.11:ENST00000527323.5:ENST00000533079.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	54	2	1.70409	1.88178	2.05947	0.0333232	0.028108	0.137011	0.134145
chr11	70320398	70320498	4820909	0	+	0.42	(0.408,0.44]	chr11	449385	360	INTRON	INTRON	PPFIA1	ENSG00000131626.19	ENST00000253925.12:ENST00000389547.7:ENST00000532504.5:ENST00000530746.1:ENST00000532024.1:ENST00000648755.1:ENST00000644155.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	54	2	1.70409	1.88178	2.05947	0.0333232	0.028108	0.137011	0.134145
chr5	151810406	151810505	2522217	0	+	0.434343	(0.408,0.44]	chr5	241380	50	UTR3	UTR3:EXON_MRNA:INTRON	G3BP1	ENSG00000145907.16	ENST00000678964.1:ENST00000678925.1:ENST00000394123.7:ENST00000676978.1:ENST00000679289.1:ENST00000677493.1:ENST00000676644.1:ENST00000677757.1:ENST00000356245.8:ENST00000678646.1:ENST00000677381.1:ENST00000678904.1:ENST00000677923.1:ENST00000677323.1:ENST00000676715.1:ENST00000676734.1:ENST00000676878.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	54	2	1.70409	1.88178	2.05947	0.0333232	0.028108	0.137011	0.134145
chr7	72893605	72893705	3329934	0	+	0.37	(0.35,0.378]	chr7	309565	21	INTRON	INTRON	POM121	ENSG00000196313.13	ENST00000627934.3:ENST00000395270.5	protein_coding	protein_coding	protein_coding	protein_coding	6	62	2	1.83633	1.881685	1.92704	0.0335602	0.0228255	0.134145	0.125469
chr8	30711367	30711464	3932582	0	-	0.329897	(0.32,0.35]	chr8	360263	11	INTRON	INTRON	GSR	ENSG00000104687.14	ENST00000221130.11:ENST00000643653.1:ENST00000643525.1:ENST00000537535.5:ENST00000541648.5:ENST00000546342.5:ENST00000523295.5:ENST00000521479.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	71	2	1.72098	1.881675	2.04237	0.0375542	0.0192903	0.140222	0.119831
chr16	81383258	81383358	6404920	0	+	0.53	(0.515,0.57]	chr16	615020	58	UTR3	UTR3:EXON_MRNA	GAN	ENSG00000261609.8	ENST00000648994.2	protein_coding	protein_coding	protein_coding	protein_coding	5	40	2	1.81744	1.88167	1.9459	0.0429089	0.031028	0.148082	0.143457
chr4	39702383	39702483	1953034	0	+	0.48	(0.476,0.515]	chr4	195630	36	INTRON	INTRON	UBE2K	ENSG00000078140.14	ENST00000510934.5:ENST00000261427.10:ENST00000438068.6:ENST00000513231.5:ENST00000503368.5:ENST00000445950.2:ENST00000510719.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	28	242	2	1.69718	1.8816549999999999	2.06613	0.0024813	0.00103469	0.0460771	0.029231300000000002
chr12	96297921	96298021	5394246	0	-	0.31	(0.28,0.32]	chr12	514412	2	SS3_PROX	SS3_PROX:INTRON	CDK17	ENSG00000059758.8	ENST00000261211.8:ENST00000543119.6:ENST00000542666.5:ENST00000553042.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	71	2	1.76293	1.8816199999999998	2.00031	0.0766478	0.0110488	0.196164	0.0928193
chr1	110355675	110355775	182507	0	+	0.37	(0.35,0.378]	chr1	20252	4	SS3_PROX	SS3_PROX:INTRON	LAMTOR5-AS1	ENSG00000224699.10	ENST00000626572.2	lncRNA	lncRNA	lncRNA	lncRNA	4	43	2	1.82887	1.881595	1.93432	0.0584878	0.0481438	0.189395	0.153019
chr22	49604555	49604655	7602126	0	-	0.48	(0.476,0.515]	chr22	778570	89	INTRON	INTRON	MIR3667HG	ENSG00000188511.13	ENST00000414287.5:ENST00000416411.1:ENST00000689875.1	lncRNA	lncRNA	lncRNA	lncRNA	19	169	2	1.83518	1.88158	1.92798	0.00463761	0.00187961	0.0600108	0.0402444
chr11	57767127	57767227	4793184	0	+	0.46	(0.44,0.476]	chr11	443717	26	INTRON	INTRON	ENSG00000288534:CTNND1	ENSG00000288534.1:ENSG00000198561.16	ENST00000673781.1:ENST00000673810.1:ENST00000674116.1:ENST00000674060.1:ENST00000524630.5:ENST00000529919.5:ENST00000533189.1:ENST00000682741.1:ENST00000358694.10:ENST00000361332.8:ENST00000361391.10:ENST00000361796.9:ENST00000415361.6:ENST00000426142.6:ENST00000428599.6:ENST00000525902.5:ENST00000526357.5:ENST00000526772.5:ENST00000527467.5:ENST00000528232.5:ENST00000528621.5:ENST00000529526.5:ENST00000529873.5:ENST00000529986.5:ENST00000530094.5:ENST00000530748.5:ENST00000531014.5:ENST00000532245.5:ENST00000532463.5:ENST00000532649.5:ENST00000532787.5:ENST00000532844.5:ENST00000533667.5:ENST00000534579.5:ENST00000399050.10:ENST00000526938.5:ENST00000531007.2:ENST00000674015.1:ENST00000673826.1:ENST00000673683.1:ENST00000674106.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	120	2	1.50943	1.881535	2.25364	0.0316416	7.54486e-4	0.13151	0.0251966
chr12	122082965	122083065	5239904	0	+	0.43	(0.408,0.44]	chr12	497496	33	INTRON	INTRON	MLXIP	ENSG00000175727.14	ENST00000319080.12	protein_coding	protein_coding	protein_coding	protein_coding	7	66	2	1.60344	1.88141	2.15938	0.0387506	0.011260300000000001	0.160156	0.0884004
chr5	154762980	154763080	2527074	0	+	0.35	(0.32,0.35]	chr5	241610	51	INTRON	INTRON	LARP1	ENSG00000155506.19	ENST00000687700.1:ENST00000336314.9:ENST00000690816.1:ENST00000518297.6:ENST00000517616.5:ENST00000518892.1:ENST00000521577.1:ENST00000519931.5:ENST00000524248.5:ENST00000685946.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	77	2	1.74135	1.8813399999999998	2.02133	0.0298264	0.017146	0.129138	0.111072
chr14	102617916	102618016	5822786	0	+	0.29	(0.28,0.32]	chr14	552490	242	INTRON	INTRON	RCOR1	ENSG00000089902.10	ENST00000262241.7	protein_coding	protein_coding	protein_coding	protein_coding	10	116	2	1.81492	1.88127	1.94762	0.0253829	0.0061378	0.12011	0.0709719
chr6	79076848	79076947	3142067	0	-	0.373737	(0.35,0.378]	chr6	292888	89	INTRON	INTRON	PHIP	ENSG00000146247.14	ENST00000275034.5	protein_coding	protein_coding	protein_coding	protein_coding	8	81	2	1.74826	1.88102	2.01378	0.0279529	0.00952336	0.124524	0.0863913
chr7	75482510	75482609	3558895	0	-	0.515152	(0.476,0.515]	chr7	331555	70	INTRON	INTRON	POM121C:ENSG00000242073	ENSG00000272391.6:ENSG00000242073.2	ENST00000615331.5:ENST00000398379.2:ENST00000415277.2	protein_coding	protein_coding	protein_coding:transcribed_unprocessed_pseudogene	protein_coding:transcribed_unprocessed_pseudogene	6	56	2	1.7425	1.881015	2.01953	0.0417334	0.0163662	0.147007	0.109586
chr21	33527469	33527567	7441236	0	-	0.510204	(0.476,0.515]	chr21	759447	21	INTRON	INTRON	GART	ENSG00000159131.17	ENST00000381839.7:ENST00000381831.7:ENST00000424203.5:ENST00000381815.9:ENST00000467575.1:ENST00000361093.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	84	2	1.52755	1.8809749999999998	2.2344	0.0355377	0.00432475	0.151404	0.0579331
chr16	84566363	84566459	6533261	0	-	0.614583	(0.57,1]	chr16	633072	9	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	COTL1	ENSG00000103187.8	ENST00000262428.5:ENST00000567278.1:ENST00000564057.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	57	2	1.80424	1.880945	1.95765	0.0129439	0.00280297	0.0991015	0.0470322
chr9	120856347	120856447	4335764	0	-	0.61	(0.57,1]	chr9	398327	8	UTR3	UTR3:EXON_MRNA	PHF19	ENSG00000119403.15	ENST00000373896.8:ENST00000419155.5:ENST00000616568.5	protein_coding	protein_coding	protein_coding	protein_coding	18	82	2	1.7865	1.88082	1.97514	0.00294372	0.00181814	0.0484117	0.0395402
chr14	30959310	30959409	5857201	0	-	0.353535	(0.35,0.378]	chr14	556504	27	INTRON	INTRON	STRN3	ENSG00000196792.12	ENST00000355683.9:ENST00000357479.10:ENST00000555358.5:ENST00000555152.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	118	2	1.43646	1.8807450000000001	2.32503	0.0351612	0.0014174	0.137535	0.0346457
chr13	113183652	113183748	5651797	0	-	0.416667	(0.408,0.44]	chr13	538577	21	INTRON	INTRON	PCID2	ENSG00000126226.22	ENST00000337344.9:ENST00000622406.4:ENST00000375479.6:ENST00000375477.5:ENST00000246505.9:ENST00000375459.5:ENST00000493650.5:ENST00000375457.2:ENST00000473462.5:ENST00000475433.5:ENST00000480971.5:ENST00000484641.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	60	2	1.54273	1.8806500000000002	2.21857	0.0337312	0.0209591	0.146709	0.112046
chr6	33301267	33301365	3082683	0	-	0.530612	(0.515,0.57]	chr6	288364	17	UTR3	UTR3:EXON_MRNA	TAPBP	ENSG00000231925.13	ENST00000434618.7	protein_coding	protein_coding	protein_coding	protein_coding	9	67	2	1.39706	1.8805299999999998	2.364	0.041152	0.00447856	0.161534	0.0593175
chr2	151445545	151445640	893579	0	+	0.431579	(0.408,0.44]	chr2	98969	1	SS5_PROX	SS5_PROX:INTRON	RIF1	ENSG00000080345.18	ENST00000453091.6:ENST00000428287.6:ENST00000444746.7:ENST00000243326.9:ENST00000414861.6:ENST00000430328.6	protein_coding	protein_coding	protein_coding	protein_coding	7	60	2	1.35436	1.8804850000000002	2.40661	0.0603719	0.011475	0.19151	0.0888882
chr12	53039053	53039145	5141762	0	+	0.467391	(0.44,0.476]	chr12	485047	8	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	EIF4B	ENSG00000063046.18	ENST00000262056.14:ENST00000420463.7:ENST00000416762.7:ENST00000549592.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	54	2	1.42812	1.88042	2.33272	0.0673866	0.0129984	0.183355	0.0991656
chr9	34044048	34044147	4245803	0	-	0.464646	(0.44,0.476]	chr9	390499	108	INTRON	INTRON	UBAP2	ENSG00000137073.24	ENST00000379238.7:ENST00000683659.1:ENST00000682239.1:ENST00000683140.1:ENST00000682209.1:ENST00000681980.1:ENST00000360802.6:ENST00000683252.1:ENST00000684158.1:ENST00000682914.1:ENST00000683717.1:ENST00000379239.9:ENST00000683084.1:ENST00000684754.1:ENST00000629575.2:ENST00000684298.1:ENST00000480885.5:ENST00000459988.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	54	2	1.42812	1.88042	2.33272	0.0673866	0.0129984	0.183355	0.0991656
chr5	134371512	134371595	2488573	0	+	0.698795	(0.57,1]	chr5	237574	5	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	UBE2B	ENSG00000119048.9	ENST00000507277.2:ENST00000510021.5:ENST00000511807.1:ENST00000265339.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	42	188	2	1.74329	1.880405	2.01752	8.42769e-4	8.67798e-5	0.0267232	0.00783027
chr1	39426757	39426855	78198	0	+	0.357143	(0.35,0.378]	chr1	10041	22	INTRON	INTRON	MACF1	ENSG00000127603.32	ENST00000361689.7:ENST00000567887.5:ENST00000372915.8:ENST00000564288.6:ENST00000671089.2:ENST00000372925.6:ENST00000289893.8:ENST00000686067.1:ENST00000687997.1:ENST00000530275.3:ENST00000683517.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	60	2	1.53008	1.880255	2.23043	0.0530361	0.0187487	0.162198	0.117523
chr18	675996	676090	6939389	0	-	0.382979	(0.378,0.408]	chr18	686372	2	INTRON	INTRON	ENOSF1	ENSG00000132199.20	ENST00000647584.2:ENST00000383578.7:ENST00000584259.6:ENST00000340116.12:ENST00000581475.5:ENST00000584646.5:ENST00000582745.5:ENST00000580982.5:ENST00000585128.6:ENST00000583973.5:ENST00000581928.5:ENST00000584453.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	57	2	1.52219	1.8802499999999998	2.23831	0.0531838	0.0179575	0.162538	0.114265
chr14	102615117	102615217	5822758	0	+	0.56	(0.515,0.57]	chr14	552490	214	INTRON	INTRON	RCOR1	ENSG00000089902.10	ENST00000262241.7	protein_coding	protein_coding	protein_coding	protein_coding	7	55	2	1.7407	1.88024	2.01978	0.0242347	0.0165522	0.130613	0.102621
chr6	135211103	135211202	2962472	0	+	0.434343	(0.408,0.44]	chr6	278661	73	INTRON	INTRON	MYB	ENSG00000118513.20	ENST00000341911.10:ENST00000442647.7:ENST00000316528.12:ENST00000616088.4:ENST00000339290.9:ENST00000367812.6:ENST00000463282.6:ENST00000525477.5:ENST00000533837.5:ENST00000367814.8:ENST00000525369.5:ENST00000438901.6:ENST00000525514.5:ENST00000526320.5:ENST00000526889.5:ENST00000529586.5:ENST00000531519.5:ENST00000533808.5:ENST00000528343.5:ENST00000524588.5:ENST00000525002.5:ENST00000525940.5:ENST00000526187.5:ENST00000526565.5:ENST00000528015.5:ENST00000528140.5:ENST00000528345.5:ENST00000528774.5:ENST00000529262.5:ENST00000531634.5:ENST00000531737.5:ENST00000533384.5:ENST00000533624.5:ENST00000534044.5:ENST00000534121.5:ENST00000531845.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	86	2	1.49789	1.880205	2.26252	0.0390091	0.00399285	0.161009	0.0550622
chr3	196076123	196076211	1897498	0	-	0.284091	(0.28,0.32]	chr3	189984	4	INTRON	INTRON	TFRC	ENSG00000072274.13	ENST00000420415.5:ENST00000360110.9:ENST00000392396.7:ENST00000421258.1:ENST00000464011.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	21	227	2	1.80454	1.88019	1.95584	0.00824383	0.00244306	0.0773378	0.0456956
chr2	235591022	235591122	1042307	0	+	0.51	(0.476,0.515]	chr2	111222	661	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1:ENST00000402604.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	56	2	1.69138	1.88018	2.06898	0.0481165	0.0137491	0.153019	0.10247
chr6	70568953	70569053	2895530	0	+	0.49	(0.476,0.515]	chr6	274071	14	INTRON	INTRON	SDHAF4	ENSG00000154079.6	ENST00000370474.4	protein_coding	protein_coding	protein_coding	protein_coding	6	56	2	1.69138	1.88018	2.06898	0.0481165	0.0137491	0.153019	0.10247
chr11	9171652	9171749	4908119	0	-	0.412371	(0.408,0.44]	chr11	460057	10	EXON_MRNA	EXON_MRNA:INTRON	DENND5A	ENSG00000184014.9	ENST00000328194.8:ENST00000681203.1:ENST00000530780.2:ENST00000680358.1:ENST00000679999.1:ENST00000679458.1:ENST00000680470.1:ENST00000680599.1:ENST00000680554.1:ENST00000679745.1:ENST00000680252.1:ENST00000681425.1:ENST00000681158.1:ENST00000679460.1:ENST00000679568.1:ENST00000679446.1:ENST00000680294.1:ENST00000680742.1:ENST00000680885.1:ENST00000680576.1:ENST00000530044.5:ENST00000527700.5:ENST00000526707.5:ENST00000681173.1:ENST00000527896.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	47	2	1.81759	1.88016	1.94273	0.0456237	0.0316273	0.149888	0.144405
chr9	131172960	131173059	4216116	0	+	0.343434	(0.32,0.35]	chr9	386613	85	INTRON	INTRON	NUP214	ENSG00000126883.19	ENST00000695497.1:ENST00000695498.1:ENST00000695496.1:ENST00000695495.1:ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000525980.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	67	2	1.83315	1.8801	1.92705	0.0313348	0.0267365	0.144381	0.123349
chr20	38931107	38931206	7272470	0	+	0.414141	(0.408,0.44]	chr20	739054	38	INTRON	INTRON	FAM83D	ENSG00000101447.15	ENST00000619304.4:ENST00000619850.2	protein_coding	protein_coding	protein_coding	protein_coding	5	47	2	1.75791	1.8800949999999998	2.00228	0.0389732	0.0378795	0.157034	0.143072
chr7	12357431	12357515	3484952	0	-	0.416667	(0.408,0.44]	chr7	325877	3	CDS	CDS:UTR3:EXON_MRNA	VWDE	ENSG00000146530.15	ENST00000275358.8:ENST00000452576.6:ENST00000521169.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	47	2	1.75791	1.8800949999999998	2.00228	0.0389732	0.0378795	0.157034	0.143072
chr2	58215677	58215775	1126493	0	-	0.377551	(0.35,0.378]	chr2	120938	16	INTRON	INTRON	FANCL	ENSG00000115392.13	ENST00000696400.1:ENST00000403295.8:ENST00000696492.1:ENST00000427708.7:ENST00000696314.1:ENST00000696315.1:ENST00000696454.1:ENST00000696508.1:ENST00000696548.1:ENST00000696542.1:ENST00000696319.1:ENST00000403676.6:ENST00000696433.1:ENST00000696434.1:ENST00000696499.1:ENST00000696564.1:ENST00000402135.8:ENST00000696546.1:ENST00000233741.9:ENST00000696316.1:ENST00000696378.1:ENST00000696435.1:ENST00000696493.1:ENST00000696543.1:ENST00000696544.1:ENST00000696545.1:ENST00000696565.1:ENST00000696620.1:ENST00000696621.1:ENST00000696635.1:ENST00000696364.1:ENST00000696634.1:ENST00000696317.1:ENST00000696622.1:ENST00000696467.1:ENST00000696547.1:ENST00000449070.6:ENST00000696305.1:ENST00000417361.2:ENST00000696338.1:ENST00000696361.1:ENST00000696318.1:ENST00000696371.1:ENST00000696409.1:ENST00000696410.1:ENST00000696455.1:ENST00000696468.1:ENST00000696527.1:ENST00000696567.1:ENST00000696324.1:ENST00000696566.1:ENST00000696623.1:ENST00000446381.6:ENST00000696469.1:ENST00000696624.1:ENST00000696411.1:ENST00000470506.2:ENST00000696358.1:ENST00000696373.1:ENST00000696394.1:ENST00000696320.1:ENST00000696395.1:ENST00000696341.1:ENST00000696340.1:ENST00000696374.1:ENST00000696396.1:ENST00000696342.1:ENST00000696325.1:ENST00000696399.1:ENST00000696398.1:ENST00000696306.1:ENST00000696397.1:ENST00000696360.1:ENST00000696344.1:ENST00000696343.1:ENST00000696362.1:ENST00000696528.1:ENST00000696326.1:ENST00000696625.1:ENST00000696510.1:ENST00000696438.1:ENST00000696496.1:ENST00000696509.1:ENST00000696569.1:ENST00000696457.1:ENST00000696458.1:ENST00000696473.1:ENST00000696495.1:ENST00000696415.1:ENST00000696472.1:ENST00000696459.1:ENST00000696416.1:ENST00000696530.1:ENST00000696460.1:ENST00000696570.1:ENST00000696531.1:ENST00000696307.1:ENST00000696345.1:ENST00000696377.1:ENST00000696417.1:ENST00000696594.1:ENST00000696595.1:ENST00000696379.1:ENST00000696346.1:ENST00000696380.1:ENST00000696347.1:ENST00000696461.1:ENST00000696596.1:ENST00000696549.1:ENST00000696597.1:ENST00000696550.1:ENST00000696598.1:ENST00000696321.1:ENST00000696476.1:ENST00000696477.1:ENST00000696511.1:ENST00000481670.3:ENST00000696403.1:ENST00000696551.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	129	2	1.48476	1.88005	2.27534	0.0300009	0.00112024	0.129138	0.0307546
chr15	52550835	52550935	6177130	0	-	0.25	[0,0.28]	chr15	588878	39	UTR3	UTR3:EXON_MRNA	ARPP19	ENSG00000128989.11	ENST00000566423.5:ENST00000249822.9:ENST00000561650.5	protein_coding	protein_coding	protein_coding	protein_coding	15	198	2	1.51983	1.879855	2.23988	0.026672	0.00206593	0.123349	0.0421724
chr7	102642329	102642429	3588942	0	-	0.38	(0.378,0.408]	chr7	335084	3	SS5_PROX	SS5_PROX:INTRON	UPK3BL1:ENSG00000267645	ENSG00000267368.1:ENSG00000267645.5	ENST00000340457.8:ENST00000476151.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	62	2	1.36527	1.879855	2.39444	0.0587392	0.0122858	0.189982	0.091087
chr3	179392356	179392455	1567398	0	+	0.383838	(0.378,0.408]	chr3	162161	4	UTR3	UTR3:EXON_MRNA	MFN1	ENSG00000171109.19	ENST00000471841.6:ENST00000357390.8:ENST00000263969.9:ENST00000474903.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	49	2	1.58349	1.879785	2.17608	0.0653091	0.0218783	0.180158	0.123836
chr4	62648	62748	1905383	0	+	0.26	[0,0.28]	chr4	191003	21	INTRON	INTRON	ZNF595	ENSG00000272602.6	ENST00000608255.2:ENST00000609518.5:ENST00000509152.3:ENST00000610261.6	protein_coding	protein_coding	protein_coding	protein_coding	17	225	2	1.56882	1.87974	2.19066	0.0204506	0.00186697	0.110999	0.0399876
chr3	50094571	50094669	1424546	0	+	0.479592	(0.476,0.515]	chr3	150126	3	INTRON	INTRON	RBM6:RBM5	ENSG00000004534.15:ENSG00000003756.17	ENST00000434592.5:ENST00000347869.8:ENST00000404526.6:ENST00000469838.5:ENST00000433556.6:ENST00000441305.5:ENST00000438369.5:ENST00000464087.6:ENST00000417905.1:ENST00000395174.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	82	2	1.44826	1.879695	2.31113	0.0482164	0.00258657	0.153146	0.0469354
chr1	51455035	51455135	453704	0	-	0.32	(0.28,0.32]	chr1	54395	65	INTRON	INTRON	EPS15	ENSG00000085832.17	ENST00000371733.8:ENST00000371730.6	protein_coding	protein_coding	protein_coding	protein_coding	8	92	2	1.72809	1.879575	2.03106	0.0208123	0.0197186	0.120131	0.111549
chr3	47660394	47660494	1683834	0	-	0.39	(0.378,0.408]	chr3	171996	213	INTRON	INTRON	SMARCC1	ENSG00000173473.11	ENST00000254480.10:ENST00000425518.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	59	2	1.53052	1.879555	2.22859	0.0744544	0.00763308	0.192012	0.0777238
chr6	33266556	33266634	3082371	0	-	0.538462	(0.515,0.57]	chr6	288196	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	VPS52	ENSG00000223501.9	ENST00000478934.5:ENST00000482399.5:ENST00000445902.3:ENST00000493379.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	40	2	1.49871	1.879415	2.26012	0.0770828	0.0160033	0.196285	0.109464
chr8	140525449	140525549	4075435	0	-	0.52	(0.515,0.57]	chr8	370170	54	UTR3	UTR3:EXON_MRNA	AGO2	ENSG00000123908.12	ENST00000220592.10	protein_coding	protein_coding	protein_coding	protein_coding	5	40	2	1.49871	1.879415	2.26012	0.0770828	0.0160033	0.196285	0.109464
chr1	21764176	21764276	396680	0	-	0.51	(0.476,0.515]	chr1	47345	60	INTRON	INTRON	USP48	ENSG00000090686.16	ENST00000400301.5:ENST00000308271.14:ENST00000529637.5:ENST00000421625.6:ENST00000527823.5:ENST00000532737.1:ENST00000489108.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	46	2	1.43644	1.8793699999999998	2.3223	0.0519312	0.047372	0.169265	0.159306
chr5	1631359	1631457	2566278	0	-	0.357143	(0.35,0.378]	chr5	245824	4	INTRON	INTRON	PDCD6P1	ENSG00000188002.11	ENST00000507841.5:ENST00000512335.5:ENST00000692393.1:ENST00000507290.5:ENST00000690809.1:ENST00000688433.1:ENST00000507505.5:ENST00000691115.1:ENST00000502273.7:ENST00000522848.5:ENST00000689007.1:ENST00000690916.1:ENST00000686018.1:ENST00000687772.1:ENST00000693722.1:ENST00000690945.1:ENST00000343123.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	8	79	2	1.47679	1.879305	2.28182	0.0466814	0.00637232	0.151623	0.0724821
chr5	79646758	79646855	2399081	0	+	0.412371	(0.408,0.44]	chr5	231729	12	INTRON	INTRON	TENT2	ENSG00000164329.14	ENST00000423041.6:ENST00000504233.5:ENST00000453514.6:ENST00000428308.6:ENST00000296783.7:ENST00000509227.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	65	2	1.44993	1.879155	2.30838	0.0638951	0.00547703	0.177824	0.0671198
chr1	32836599	32836695	66760	0	+	0.375	(0.35,0.378]	chr1	8568	19	EXON_LNCRNA	EXON_LNCRNA:INTRON	S100PBP	ENSG00000116497.18	ENST00000373476.5:ENST00000531123.5:ENST00000356689.7:ENST00000373475.10	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	90	2	1.54128	1.87907	2.21686	0.0385205	0.00414535	0.1426	0.0589266
chr2	61293950	61294050	1128746	0	-	0.42	(0.408,0.44]	chr2	121329	4	SS3_PROX	SS3_PROX:INTRON	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000472706.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	65	2	1.58026	1.87905	2.17784	0.0444624	0.00916282	0.149888	0.0855292
chr22	20529346	20529446	7479568	0	+	0.42	(0.408,0.44]	chr22	762964	46	INTRON	INTRON	MED15	ENSG00000099917.17	ENST00000445987.5:ENST00000444094.5:ENST00000414658.5:ENST00000486656.5:ENST00000433831.5:ENST00000432052.5:ENST00000292733.11:ENST00000263205.11:ENST00000477824.5:ENST00000406969.5:ENST00000382974.6:ENST00000441501.5:ENST00000438962.1:ENST00000445189.5:ENST00000451058.5:ENST00000473028.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	65	2	1.58026	1.87905	2.17784	0.0444624	0.00916282	0.149888	0.0855292
chr7	102043942	102044042	3368634	0	+	0.47	(0.44,0.476]	chr7	315239	154	INTRON	INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000497815.5:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000558469.5:ENST00000560541.5:ENST00000558836.5:ENST00000606749.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	67	2	1.43625	1.879045	2.32184	0.063142	0.00609071	0.197183	0.0676501
chr6	53324461	53324561	3107944	0	-	0.53	(0.515,0.57]	chr6	291049	284	INTRON	INTRON	ELOVL5	ENSG00000012660.14	ENST00000370918.8:ENST00000542638.5:ENST00000304434.11:ENST00000485336.5:ENST00000465983.5:ENST00000486973.1:ENST00000370913.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	46	2	1.7407	1.879035	2.01737	0.0352218	0.0242347	0.137535	0.130613
chr14	103714442	103714538	5972359	0	-	0.458333	(0.44,0.476]	chr14	567702	3	INTRON	INTRON	XRCC3	ENSG00000126215.14	ENST00000554913.5:ENST00000352127.11:ENST00000555055.6:ENST00000554974.5:ENST00000557439.5:ENST00000553361.5:ENST00000555964.5:ENST00000555231.5:ENST00000556682.5:ENST00000553332.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	87	2	1.49345	1.8789850000000001	2.26452	0.0271885	0.00654074	0.123904	0.0735539
chr16	85627439	85627538	6416111	0	+	0.626263	(0.57,1]	chr16	615481	137	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1:ENST00000405402.6:ENST00000411612.5:ENST00000253458.12:ENST00000393243.5	protein_coding	protein_coding	protein_coding	protein_coding	11	52	2	1.80424	1.878955	1.95367	0.0129439	0.00422673	0.0991015	0.0572185
chr19	1461539	1461638	7111990	0	-	0.606061	(0.57,1]	chr19	714460	5	UTR3	UTR3:EXON_MRNA	C19orf25	ENSG00000119559.17	ENST00000588427.5	protein_coding	protein_coding	protein_coding	protein_coding	6	28	2	1.37384	1.878875	2.38391	0.0766386	0.0104374	0.196164	0.0902296
chr20	63876771	63876870	7300803	0	+	0.646465	(0.57,1]	chr20	743108	5	INTRON	INTRON	TPD52L2	ENSG00000101150.18	ENST00000611972.4:ENST00000615907.4:ENST00000369927.8:ENST00000346249.9:ENST00000348257.9:ENST00000352482.8:ENST00000351424.8:ENST00000217121.9:ENST00000358548.4	protein_coding	protein_coding	protein_coding	protein_coding	6	28	2	1.37384	1.878875	2.38391	0.0766386	0.0104374	0.196164	0.0902296
chr16	23914141	23914241	6324542	0	+	0.43	(0.408,0.44]	chr16	605701	204	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000498739.1	protein_coding	protein_coding	protein_coding	protein_coding	17	147	2	1.60681	1.8786800000000001	2.15055	0.00760966	0.00257687	0.0775802	0.0451926
chr20	56405190	56405288	7287437	0	+	0.469388	(0.44,0.476]	chr20	741418	16	UTR3	UTR3:EXON_MRNA	CSTF1	ENSG00000101138.12	ENST00000217109.9	protein_coding	protein_coding	protein_coding	protein_coding	5	47	2	1.61163	1.87868	2.14573	0.0598319	0.0238593	0.169278	0.129075
chr9	122904409	122904509	4338626	0	-	0.41	(0.408,0.44]	chr9	398791	64	INTRON	INTRON	RC3H2	ENSG00000056586.16	ENST00000357244.7:ENST00000498479.5:ENST00000423239.6:ENST00000335387.9:ENST00000478216.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	56	2	1.74775	1.87868	2.00961	0.0735403	0.00931007	0.190238	0.0855292
chr7	135420356	135420456	3648062	0	-	0.48	(0.476,0.515]	chr7	339173	47	INTRON	INTRON	CNOT4	ENSG00000080802.20	ENST00000541284.6:ENST00000451834.5:ENST00000423368.6:ENST00000361528.8:ENST00000414802.5:ENST00000428680.6:ENST00000315544.6	protein_coding	protein_coding	protein_coding	protein_coding	7	64	2	1.78315	1.8785850000000002	1.97402	0.0215899	0.0206778	0.123836	0.110999
chr1	25543605	25543698	48653	0	+	0.774194	(0.57,1]	chr1	5981	1	UTR5	UTR5:EXON_MRNA	LDLRAP1	ENSG00000157978.12	ENST00000374338.5	protein_coding	protein_coding	protein_coding	protein_coding	5	25	2	1.83769	1.87853	1.91937	0.0468438	0.0297587	0.167716	0.12908
chr22	20950430	20950527	7480849	0	+	0.608247	(0.57,1]	chr22	763101	7	UTR3	UTR3:EXON_MRNA:INTRON	CRKL	ENSG00000099942.13	ENST00000354336.8:ENST00000411769.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	55	242	2	1.68091	1.8785	2.07609	5.51661e-4	4.83519e-5	0.0216014	0.00567485
chr6	110807270	110807369	3190376	0	-	0.343434	(0.32,0.35]	chr6	297127	330	INTRON	INTRON	CDK19	ENSG00000155111.15	ENST00000323817.7:ENST00000368911.8:ENST00000413605.6:ENST00000457688.5:ENST00000460913.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	47	2	1.45026	1.878495	2.30673	0.0622478	0.0584434	0.194723	0.167723
chr1	23025505	23025604	43818	0	+	0.525253	(0.515,0.57]	chr1	5252	52	INTRON	INTRON	KDM1A	ENSG00000004487.18	ENST00000692214.1:ENST00000686934.1:ENST00000689853.1:ENST00000465864.2:ENST00000691256.1:ENST00000688122.1:ENST00000692056.1:ENST00000692853.1:ENST00000689366.1:ENST00000686270.1:ENST00000685102.1:ENST00000690627.1:ENST00000686771.1:ENST00000692209.1:ENST00000686339.1:ENST00000691813.1:ENST00000693156.1:ENST00000688235.1:ENST00000692975.1:ENST00000687202.1:ENST00000691682.1:ENST00000691404.1:ENST00000691694.1:ENST00000688680.1:ENST00000356634.7:ENST00000400181.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	55	2	1.48539	1.878275	2.27116	0.0553982	0.00601759	0.165463	0.0700813
chr10	70159532	70159629	4640775	0	-	0.525773	(0.515,0.57]	chr10	426888	13	INTRON	INTRON	SAR1A	ENSG00000079332.15	ENST00000373242.6:ENST00000373241.9:ENST00000373238.5:ENST00000431664.6:ENST00000373236.1	protein_coding	protein_coding	protein_coding	protein_coding	7	55	2	1.48539	1.878275	2.27116	0.0553982	0.00601759	0.165463	0.0700813
chr1	55064559	55064656	108740	0	+	0.56701	(0.515,0.57]	chr1	14230	11	UTR3	UTR3:EXON_MRNA	PCSK9	ENSG00000169174.11	ENST00000302118.5:ENST00000673903.1:ENST00000490692.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	11	77	2	1.1792	1.878165	2.57713	0.0588485	0.00176427	0.189982	0.0376652
chr9	37136836	37136936	4117821	0	+	0.56	(0.515,0.57]	chr9	375372	95	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000322831.6:ENST00000461038.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	55	2	1.63907	1.878155	2.11724	0.0350277	0.0110335	0.137535	0.0927187
chr9	19098259	19098358	4236557	0	-	0.50505	(0.476,0.515]	chr9	389435	11	INTRON	INTRON	HAUS6	ENSG00000147874.11	ENST00000380502.8	protein_coding	protein_coding	protein_coding	protein_coding	5	47	2	1.69138	1.878145	2.06491	0.0481165	0.0304733	0.153019	0.143385
chr5	10357064	10357164	2317680	0	+	0.42	(0.408,0.44]	chr5	224612	20	INTRON	INTRON	MARCHF6	ENSG00000145495.16	ENST00000274140.10:ENST00000449913.6:ENST00000502795.5:ENST00000511802.5:ENST00000503788.5:ENST00000640713.1:ENST00000510872.5:ENST00000507863.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	14	126	2	1.76662	1.878055	1.98949	0.00636414	0.00523528	0.0724478	0.0633615
chr2	144515148	144515248	1241763	0	-	0.34	(0.32,0.35]	chr2	131754	8	INTRON	INTRON	ZEB2	ENSG00000169554.23	ENST00000636471.1:ENST00000627532.3:ENST00000638128.1:ENST00000637304.1:ENST00000419938.5:ENST00000409487.7:ENST00000636732.2:ENST00000636026.2:ENST00000675069.1:ENST00000689298.1:ENST00000539609.7:ENST00000558170.6:ENST00000303660.8:ENST00000427902.5:ENST00000637267.2:ENST00000392861.6:ENST00000431672.4:ENST00000409211.5:ENST00000465308.5:ENST00000434448.5:ENST00000472146.5:ENST00000461784.3:ENST00000476394.5:ENST00000637591.2:ENST00000479735.1:ENST00000453352.5:ENST00000435831.5:ENST00000444559.5:ENST00000630572.2:ENST00000484313.3:ENST00000629955.1:ENST00000465070.5:ENST00000636445.1:ENST00000629520.2:ENST00000470879.5:ENST00000462355.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	21	216	2	1.5859	1.87799	2.17008	0.00751912	0.00172738	0.0773151	0.0374713
chr2	135064179	135064279	872788	0	+	0.27	[0,0.28]	chr2	97740	15	INTRON	INTRON	RAB3GAP1	ENSG00000115839.19	ENST00000539493.3:ENST00000688088.1:ENST00000693554.1:ENST00000690785.1:ENST00000689880.1:ENST00000264158.13:ENST00000690208.1:ENST00000691478.1:ENST00000686114.1:ENST00000685967.1:ENST00000442034.5:ENST00000687199.1:ENST00000691339.1:ENST00000688182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	73	2	1.31355	1.8779849999999998	2.44242	0.0613574	0.0491024	0.193423	0.155269
chr4	102814169	102814269	2213226	0	-	0.28	[0,0.28]	chr4	216759	13	INTRON	INTRON	UBE2D3	ENSG00000109332.20	ENST00000453744.7:ENST00000394804.6:ENST00000394803.9:ENST00000394801.8:ENST00000343106.9:ENST00000503742.5:ENST00000321805.11:ENST00000350435.11:ENST00000338145.7:ENST00000349311.12:ENST00000504211.5:ENST00000357194.10:ENST00000505207.5:ENST00000507845.5:ENST00000502404.5:ENST00000508635.5:ENST00000505307.5:ENST00000510129.5:ENST00000508476.5:ENST00000502563.5:ENST00000508238.5:ENST00000514755.5:ENST00000508974.5:ENST00000502690.5:ENST00000508818.5:ENST00000503418.5:ENST00000508249.1:ENST00000513098.5:ENST00000503282.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	109	2	1.66484	1.8779750000000002	2.09111	0.0617844	0.00567932	0.174281	0.0678837
chr19	57863126	57863225	7106169	0	+	0.50505	(0.476,0.515]	chr19	713245	31	UTR3	UTR3:EXON_MRNA	ZNF587	ENSG00000198466.12	ENST00000339656.8:ENST00000419854.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	18	161	2	1.35447	1.87795	2.40143	0.0225675	4.84271e-4	0.124921	0.0203841
chr7	155779409	155779508	3453270	0	+	0.272727	[0,0.28]	chr7	322755	44	UTR3	UTR3:EXON_MRNA	RBM33	ENSG00000184863.11	ENST00000401878.8:ENST00000341148.7	protein_coding	protein_coding	protein_coding	protein_coding	10	112	2	1.41743	1.87784	2.33825	0.0326282	0.0195228	0.145164	0.109483
chr12	57064285	57064371	5336701	0	-	0.348837	(0.32,0.35]	chr12	510356	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NEMP1	ENSG00000166881.10	ENST00000300128.9:ENST00000379391.7:ENST00000554340.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	93	2	1.82841	1.8777300000000001	1.92705	0.0267365	0.00930076	0.123349	0.0855292
chr12	50450875	50450974	5136846	0	+	0.414141	(0.408,0.44]	chr12	484418	89	INTRON	INTRON	LARP4	ENSG00000161813.23	ENST00000293618.12:ENST00000429001.7:ENST00000398473.7:ENST00000522085.5:ENST00000518444.5:ENST00000518561.5:ENST00000347328.9:ENST00000520064.2:ENST00000521120.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	72	2	1.70933	1.87772	2.04611	0.0189186	0.016628	0.118303	0.102621
chr17	82536379	82536479	6692771	0	+	0.42	(0.408,0.44]	chr17	654627	157	INTRON	INTRON	FOXK2	ENSG00000141568.21	ENST00000473637.6:ENST00000335255.10:ENST00000527313.6:ENST00000570585.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	39	2	1.74775	1.877715	2.00768	0.0735403	0.035843	0.190238	0.152216
chr6	17953824	17953924	3068215	0	-	0.44	(0.408,0.44]	chr6	285105	20	INTRON	INTRON	KIF13A	ENSG00000137177.20	ENST00000378814.9:ENST00000259711.11:ENST00000378826.6:ENST00000378843.6:ENST00000636847.1:ENST00000507576.1:ENST00000505588.1:ENST00000502704.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	39	2	1.74775	1.877715	2.00768	0.0735403	0.035843	0.190238	0.152216
chr18	2734083	2734182	6865681	0	+	0.323232	(0.32,0.35]	chr18	680081	12	INTRON	INTRON	SMCHD1	ENSG00000101596.17	ENST00000320876.11:ENST00000688342.1:ENST00000693213.1:ENST00000577880.5:ENST00000584897.5:ENST00000583441.2:ENST00000690757.1:ENST00000581631.1:ENST00000686763.1:ENST00000686864.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	77	2	1.60297	1.8777	2.15243	0.0647328	0.0057293	0.179192	0.0681402
chr16	85569050	85569150	6415522	0	+	0.49	(0.476,0.515]	chr16	615470	123	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	13	118	2	1.67133	1.877685	2.08404	0.012282	0.00332119	0.0970106	0.0512081
chr16	89395099	89395196	6542638	0	-	0.474227	(0.44,0.476]	chr16	634244	21	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000647238.1:ENST00000644045.1:ENST00000643147.1:ENST00000644139.1:ENST00000568512.6:ENST00000566973.1:ENST00000562211.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	39	2	1.85146	1.87768	1.9039	0.0545846	0.0501498	0.182529	0.156383
chr11	8683350	8683436	4728984	0	+	0.360465	(0.35,0.378]	chr11	437761	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPL27A	ENSG00000166441.13	ENST00000531978.5:ENST00000530585.5:ENST00000529227.5:ENST00000524496.5:ENST00000314138.11:ENST00000532359.5:ENST00000534599.5:ENST00000530022.5:ENST00000526562.5:ENST00000525981.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	91	2	1.41246	1.8776199999999998	2.34278	0.0325745	0.0129593	0.133687	0.0991015
chr16	23865223	23865322	6324051	0	+	0.323232	(0.32,0.35]	chr16	605693	275	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000498058.1:ENST00000645517.1:ENST00000498739.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	82	2	1.22414	1.877605	2.53107	0.0625148	0.00860484	0.195535	0.0784134
chr1	11936849	11936948	26006	0	+	0.515152	(0.476,0.515]	chr1	2949	16	INTRON	INTRON	PLOD1	ENSG00000083444.17	ENST00000485046.5:ENST00000449038.5:ENST00000196061.5:ENST00000358133.5:ENST00000429000.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	56	2	1.63838	1.8775849999999998	2.11679	0.0555021	0.0115627	0.165463	0.0962115
chr5	33447361	33447458	2335190	0	+	0.484536	(0.476,0.515]	chr5	225416	2	INTRON	INTRON	TARS1	ENSG00000113407.14	ENST00000502553.5:ENST00000514259.5:ENST00000508361.5:ENST00000265112.8:ENST00000455217.6:ENST00000507716.5:ENST00000509731.5:ENST00000505012.5:ENST00000513066.3:ENST00000627006.2:ENST00000506040.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	56	2	1.63838	1.8775849999999998	2.11679	0.0555021	0.0115627	0.165463	0.0962115
chr19	13152067	13152160	7022904	0	+	0.526882	(0.515,0.57]	chr19	698400	2	UTR5	UTR5:EXON_MRNA:INTRON	IER2	ENSG00000160888.7	ENST00000292433.4:ENST00000587885.1:ENST00000588173.1	protein_coding	protein_coding	protein_coding	protein_coding	8	61	2	1.73535	1.877565	2.01978	0.0165522	0.0165373	0.110511	0.102621
chr16	71761667	71761767	6513986	0	-	0.55	(0.515,0.57]	chr16	631144	1	SS3_PROX	SS3_PROX:INTRON	AP1G1	ENSG00000166747.13	ENST00000299980.9:ENST00000569748.5:ENST00000393512.7:ENST00000565009.5:ENST00000565642.5:ENST00000568327.5:ENST00000566179.1:ENST00000450149.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	14	99	2	1.78468	1.877515	1.97035	0.0195832	0.00283305	0.109483	0.0492181
chr19	19424515	19424615	7035534	0	+	0.51	(0.476,0.515]	chr19	701433	181	INTRON	INTRON	GATAD2A	ENSG00000167491.18	ENST00000494516.6:ENST00000360315.7:ENST00000609040.5:ENST00000417582.6:ENST00000683918.1:ENST00000448576.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	76	2	1.49466	1.8775	2.26034	0.026776	0.0166235	0.123349	0.110511
chr1	182384206	182384305	598986	0	-	0.383838	(0.378,0.408]	chr1	71395	63	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	GLUL	ENSG00000135821.19	ENST00000331872.11:ENST00000642379.1:ENST00000311223.9:ENST00000417584.6:ENST00000339526.8:ENST00000491322.1:ENST00000463851.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	41	379	2	1.40864	1.877485	2.34633	0.0070181	1.30933e-4	0.0754576	0.0104063
chr19	9580407	9580506	7132941	0	-	0.424242	(0.408,0.44]	chr19	718825	110	INTRON	INTRON	ZNF121	ENSG00000197961.12	ENST00000320451.7:ENST00000586602.5	protein_coding	protein_coding	protein_coding	protein_coding	6	50	2	1.35739	1.877445	2.3975	0.063317	0.040266	0.177047	0.161534
chr6	156984818	156984909	3009240	0	+	0.494505	(0.476,0.515]	chr6	281129	1	UTR3	UTR3:EXON_MRNA:INTRON	ARID1B	ENSG00000049618.24	ENST00000346085.10:ENST00000636930.2:ENST00000647938.1:ENST00000350026.10:ENST00000674298.1:ENST00000674190.1:ENST00000414678.7:ENST00000638000.1:ENST00000319584.11:ENST00000452544.2:ENST00000637887.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	56	2	1.83961	1.87743	1.91525	0.0314489	0.0232571	0.13151	0.127416
chr11	77800437	77800536	4995774	0	-	0.414141	(0.408,0.44]	chr11	472047	354	INTRON	INTRON	RSF1	ENSG00000048649.14	ENST00000308488.11:ENST00000528095.5:ENST00000440064.2:ENST00000467567.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	83	2	1.69172	1.877405	2.06309	0.0486032	0.00294584	0.153946	0.0497776
chr1	21753419	21753519	396567	0	-	0.55	(0.515,0.57]	chr1	47331	3	SS3_PROX	SS3_PROX:INTRON	USP48	ENSG00000090686.16	ENST00000400301.5:ENST00000308271.14:ENST00000529637.5:ENST00000421625.6:ENST00000527823.5:ENST00000532737.1	protein_coding	protein_coding	protein_coding	protein_coding	12	93	2	1.68236	1.8773950000000001	2.07243	0.0211981	0.00172897	0.113017	0.0384338
chr5	113009969	113010064	2453727	0	+	0.4	(0.378,0.408]	chr5	235119	16	INTRON	INTRON	DCP2	ENSG00000172795.17	ENST00000515408.5:ENST00000513585.6:ENST00000389063.3:ENST00000674880.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	105	2	1.58299	1.8773900000000001	2.17179	0.0329718	0.00178023	0.133816	0.039274
chr5	98864476	98864574	2683383	0	-	0.367347	(0.35,0.378]	chr5	253792	5	INTRON	INTRON	CHD1	ENSG00000153922.11	ENST00000614616.5:ENST00000284049.7:ENST00000514344.5:ENST00000512844.5:ENST00000505657.1:ENST00000511067.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	65	2	1.51819	1.8773499999999999	2.23651	0.0372715	0.020879	0.155878	0.111766
chr11	650319	650419	4889022	0	-	0.43	(0.408,0.44]	chr11	457687	3	SS3_PROX	SS3_PROX:INTRON	DEAF1	ENSG00000177030.19	ENST00000382409.4:ENST00000527170.5:ENST00000685854.1:ENST00000683307.1:ENST00000528864.6:ENST00000525626.6:ENST00000682936.1:ENST00000690068.1:ENST00000692634.1:ENST00000687329.1:ENST00000686001.1:ENST00000689835.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	57	2	1.8749	1.877335	1.87977	0.0282738	0.0264246	0.133676	0.125825
chr6	4056774	4056861	2790066	0	+	0.321839	(0.32,0.35]	chr6	263547	2	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PRPF4B	ENSG00000112739.17	ENST00000480058.5:ENST00000337659.11:ENST00000481109.5:ENST00000463634.6:ENST00000466185.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	16	148	2	1.21161	1.8772449999999998	2.54288	0.0377216	0.00151636	0.15655	0.0352794
chr10	17697169	17697269	4399804	0	+	0.49	(0.476,0.515]	chr10	406197	3	SS5_PROX	SS5_PROX:INTRON	STAM	ENSG00000136738.15	ENST00000377524.8:ENST00000377500.1:ENST00000494250.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	35	2	1.61586	1.8772	2.13854	0.0776563	0.0567093	0.196285	0.185107
chrX	44876586	44876686	7648636	0	+	0.49	(0.476,0.515]	chrX	782726	22	INTRON	INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000675440.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000621147.5:ENST00000475233.1:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	35	2	1.61586	1.8772	2.13854	0.0776563	0.0567093	0.196285	0.185107
chr1	167957548	167957648	248698	0	+	0.31	(0.28,0.32]	chr1	29542	53	INTRON	INTRON	DCAF6	ENSG00000143164.16	ENST00000450548.5:ENST00000470919.5:ENST00000432587.6:ENST00000367843.7:ENST00000470721.5:ENST00000367840.4:ENST00000312263.10:ENST00000455334.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	83	2	1.72279	1.8771550000000001	2.03152	0.0496859	0.00983556	0.156383	0.0877296
chr9	130739154	130739254	4214116	0	+	0.47	(0.44,0.476]	chr9	386427	243	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000393293.4	protein_coding	protein_coding	protein_coding	protein_coding	22	201	2	1.81578	1.877135	1.93849	0.00330163	0.00176867	0.0527031	0.0377568
chr17	62042976	62043076	6810657	0	-	0.45	(0.44,0.476]	chr17	672946	70	INTRON	INTRON	MED13	ENSG00000108510.10	ENST00000397786.7	protein_coding	protein_coding	protein_coding	protein_coding	9	79	2	1.80702	1.877125	1.94723	0.0227424	0.00924948	0.117618	0.0855292
chr5	150029462	150029559	2518957	0	+	0.298969	(0.28,0.32]	chr5	240804	20	INTRON	INTRON	HMGXB3	ENSG00000113716.13	ENST00000613459.4:ENST00000503427.5:ENST00000502717.6:ENST00000514469.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	76	2	1.45717	1.877125	2.29708	0.0472947	0.0195087	0.16913	0.109483
chr17	82467870	82467968	6692357	0	+	0.22449	[0,0.28]	chr17	654561	31	INTRON	INTRON	NARF	ENSG00000141562.19	ENST00000579198.5:ENST00000390006.8:ENST00000583181.5:ENST00000584192.5:ENST00000580296.5:ENST00000345415.11:ENST00000581202.5:ENST00000374611.9:ENST00000457415.7:ENST00000581795.5:ENST00000584411.5:ENST00000577812.5:ENST00000581743.5:ENST00000577432.5:ENST00000582907.5:ENST00000309794.16:ENST00000578082.5:ENST00000580748.1:ENST00000577410.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	23	269	2	1.33407	1.877005	2.41994	0.0207802	0.00170753	0.122348	0.037419
chr21	37382207	37382307	7406376	0	+	0.33	(0.32,0.35]	chr21	754850	67	INTRON	INTRON	DYRK1A	ENSG00000157540.22	ENST00000646523.1:ENST00000647425.1:ENST00000647188.2:ENST00000647504.1:ENST00000644942.1:ENST00000338785.8:ENST00000643624.1:ENST00000643551.1:ENST00000426672.6:ENST00000398960.7	protein_coding	protein_coding	protein_coding	protein_coding	17	181	2	1.56549	1.87698	2.18847	0.020401	7.25205e-4	0.110805	0.0245647
chr4	2613388	2613488	1913286	0	+	0.31	(0.28,0.32]	chr4	191983	167	INTRON	INTRON	RNF4:FAM193A	ENSG00000063978.16:ENSG00000125386.16	ENST00000508235.1:ENST00000637812.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	50	2	1.83771	1.87691	1.91611	0.0591725	0.0539102	0.189982	0.164153
chr1	19235652	19235752	387060	0	-	0.34	(0.32,0.35]	chr1	46204	4	SS3_PROX	SS3_PROX:INTRON	EMC1	ENSG00000127463.16	ENST00000477853.6:ENST00000688219.1:ENST00000690732.1:ENST00000690451.1:ENST00000688667.1:ENST00000685099.1:ENST00000685594.1:ENST00000690823.1:ENST00000692207.1:ENST00000688332.1:ENST00000375199.7:ENST00000375208.7:ENST00000486405.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	55	2	1.55682	1.8767500000000001	2.19668	0.0724487	0.021398	0.188101	0.123719
chr15	38281309	38281409	5998636	0	+	0.33	(0.32,0.35]	chr15	570204	127	INTRON	INTRON	SPRED1	ENSG00000166068.13	ENST00000299084.9:ENST00000561205.1:ENST00000561317.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	55	2	1.55682	1.8767500000000001	2.19668	0.0724487	0.021398	0.188101	0.123719
chr10	60786970	60787069	4435857	0	+	0.292929	(0.28,0.32]	chr10	409184	13	EXON_MRNA	EXON_MRNA:INTRON	CDK1	ENSG00000170312.17	ENST00000519078.6:ENST00000475504.6:ENST00000316629.8:ENST00000395284.8:ENST00000448257.6:ENST00000373809.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	13	151	2	1.52333	1.8767150000000001	2.2301	0.029991	0.00173877	0.129138	0.038529
chr8	27827504	27827604	3927228	0	-	0.27	[0,0.28]	chr8	359598	39	INTRON	INTRON	PBK	ENSG00000168078.10	ENST00000301905.9:ENST00000522944.5:ENST00000524266.1:ENST00000521226.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	95	2	1.46548	1.8766699999999998	2.28786	0.0721311	0.00782185	0.187433	0.0788675
chr9	131432019	131432116	4217351	0	+	0.546392	(0.515,0.57]	chr9	386728	14	INTRON	INTRON	PRRC2B	ENSG00000288701.1	ENST00000684596.1:ENST00000683519.1:ENST00000682501.1	protein_coding	protein_coding	protein_coding	protein_coding	5	40	2	1.8707	1.876645	1.88259	0.0523213	0.0251849	0.160182	0.133519
chr9	120441351	120441450	4332468	0	-	0.343434	(0.32,0.35]	chr9	398006	15	EXON_MRNA	EXON_MRNA:INTRON	CDK5RAP2	ENSG00000136861.19	ENST00000349780.9:ENST00000360190.8:ENST00000687279.1:ENST00000687633.1:ENST00000684780.1:ENST00000687311.1:ENST00000479584.2:ENST00000690814.1:ENST00000686842.1:ENST00000693714.1:ENST00000693386.1:ENST00000692746.1:ENST00000686376.1:ENST00000692155.1:ENST00000690646.1:ENST00000693433.1:ENST00000688923.1:ENST00000473282.6:ENST00000480112.5:ENST00000685866.1:ENST00000689688.1:ENST00000416449.6:ENST00000691504.1:ENST00000425647.1:ENST00000360822.8:ENST00000693728.1:ENST00000483412.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	85	2	1.50258	1.876635	2.25069	0.0399817	0.00934678	0.161534	0.0817766
chr1	42957636	42957735	433136	0	-	0.484848	(0.476,0.515]	chr1	52506	29	INTRON	INTRON	SLC2A1	ENSG00000117394.24	ENST00000426263.10:ENST00000630287.2:ENST00000675112.1:ENST00000674765.1:ENST00000625233.2:ENST00000372500.4:ENST00000415851.6:ENST00000630821.1:ENST00000460369.3:ENST00000676097.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	73	2	1.7425	1.8765999999999998	2.0107	0.0417334	0.00572098	0.147007	0.0681402
chr6	132815802	132815881	2961720	0	+	0.291139	(0.28,0.32]	chr6	278486	2	INTRON	INTRON	RPS12	ENSG00000112306.8	ENST00000230050.4:ENST00000484616.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	27	326	2	1.80978	1.87659	1.9434	0.00383015	0.00209583	0.0562562	0.0413429
chr6	4816600	4816700	2791264	0	+	0.5	(0.476,0.515]	chr6	263598	394	INTRON	INTRON	CDYL	ENSG00000153046.18	ENST00000328908.9:ENST00000491864.1:ENST00000440139.5:ENST00000483019.1:ENST00000397588.8:ENST00000472453.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	10	89	2	1.50655	1.8765450000000001	2.24654	0.0316424	0.00346427	0.13151	0.0539802
chr6	53348216	53348316	3108183	0	-	0.67	(0.57,1]	chr6	291051	110	INTRON	INTRON	ELOVL5	ENSG00000012660.14	ENST00000370918.8:ENST00000542638.5:ENST00000304434.11:ENST00000485336.5:ENST00000465983.5:ENST00000486973.1:ENST00000370913.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	46	2	1.46931	1.8765049999999999	2.2837	0.0325674	0.00256797	0.133687	0.0466761
chr21	6661565	6661664	7425789	0	-	0.313131	(0.28,0.32]	chr21	757499	16	INTRON	INTRON	ENSG00000280145	ENSG00000280145.3	ENST00000625185.3:ENST00000624846.3:ENST00000623313.1:ENST00000624965.1	lncRNA	lncRNA	lncRNA	lncRNA	19	212	2	1.61726	1.8764	2.13554	0.00805391	0.00308874	0.0805393	0.0497576
chr15	56967968	56968068	6032605	0	+	0.56	(0.515,0.57]	chr15	574663	465	INTRON	INTRON	TCF12	ENSG00000140262.18	ENST00000438423.6:ENST00000267811.9:ENST00000333725.10:ENST00000560190.5:ENST00000559609.5:ENST00000558908.5:ENST00000557843.5:ENST00000557947.5:ENST00000561152.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	40	2	1.60221	1.87636	2.15051	0.0581855	0.0238113	0.188704	0.118889
chr4	2000264	2000363	2095963	0	-	0.363636	(0.35,0.378]	chr4	207403	78	INTRON	INTRON	NELFA	ENSG00000185049.16	ENST00000542778.5:ENST00000382882.9:ENST00000333877.8:ENST00000431323.6:ENST00000455762.5:ENST00000421397.5:ENST00000411649.3:ENST00000443203.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	51	2	1.71046	1.87635	2.04224	0.0441269	0.0363073	0.162255	0.138959
chrX	20255733	20255833	7773300	0	-	0.37	(0.35,0.378]	chrX	794587	137	INTRON	INTRON	RPS6KA3	ENSG00000177189.14	ENST00000379565.9:ENST00000643085.1:ENST00000645270.1:ENST00000643402.1:ENST00000644368.1:ENST00000647265.1:ENST00000645268.1:ENST00000646610.1:ENST00000643337.1:ENST00000642835.1:ENST00000644893.1:ENST00000438357.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	51	2	1.71046	1.87635	2.04224	0.0441269	0.0363073	0.162255	0.138959
chr15	90196460	90196560	6098050	0	+	0.43	(0.408,0.44]	chr15	580416	30	INTRON	INTRON	SEMA4B	ENSG00000185033.15	ENST00000559322.5:ENST00000559300.5:ENST00000561085.1:ENST00000332496.10:ENST00000558895.5:ENST00000559792.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	85	2	1.54273	1.8762599999999998	2.20979	0.0337312	0.00496289	0.146709	0.0615009
chr5	179614745	179614840	2779672	0	-	0.284211	(0.28,0.32]	chr5	262288	7	UTR3	UTR3:EXON_MRNA	HNRNPH1	ENSG00000169045.17	ENST00000329433.11:ENST00000393432.9:ENST00000356731.9:ENST00000442819.6:ENST00000502904.5:ENST00000514332.5:ENST00000515481.5:ENST00000510411.5:ENST00000510678.5:ENST00000523449.5:ENST00000524179.1:ENST00000519033.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	90	995	2	1.83125	1.876255	1.92126	0.00113473	5.29073e-4	0.0307488	0.0207276
chr18	36170462	36170546	6891859	0	+	0.440476	(0.44,0.476]	chr18	683081	3	SS5_PROX	SS5_PROX:INTRON	ELP2	ENSG00000134759.14	ENST00000351393.10:ENST00000442325.6:ENST00000358232.11:ENST00000423854.6:ENST00000539560.5:ENST00000350494.10:ENST00000542824.5:ENST00000540766.5:ENST00000545302.5:ENST00000541748.5:ENST00000536830.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	47	2	1.77101	1.8762349999999999	1.98146	0.0693975	0.0186013	0.184298	0.117264
chr20	4007653	4007753	7309329	0	-	0.47	(0.44,0.476]	chr20	744300	329	INTRON	INTRON	RNF24	ENSG00000101236.17	ENST00000336095.10:ENST00000358395.11:ENST00000545616.2	protein_coding	protein_coding	protein_coding	protein_coding	5	47	2	1.77101	1.8762349999999999	1.98146	0.0693975	0.0186013	0.184298	0.117264
chr1	12344582	12344676	29419	0	+	0.329787	(0.32,0.35]	chr1	3609	12	INTRON	INTRON	VPS13D	ENSG00000048707.15	ENST00000620676.6:ENST00000613099.4:ENST00000011700.10:ENST00000646917.1:ENST00000460333.5:ENST00000643711.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	64	2	1.83416	1.87618	1.9182	0.0631198	0.0141462	0.176946	0.103512
chr2	131083754	131083853	1228996	0	-	0.323232	(0.32,0.35]	chr2	130994	7	INTRON	INTRON	FAM168B	ENSG00000152102.18	ENST00000389915.4:ENST00000409185.5	protein_coding	protein_coding	protein_coding	protein_coding	6	64	2	1.83416	1.87618	1.9182	0.0631198	0.0141462	0.176946	0.103512
chr6	20404531	20404631	2827474	0	+	0.42	(0.408,0.44]	chr6	265575	3	INTRON	INTRON	E2F3	ENSG00000112242.16	ENST00000346618.8:ENST00000535432.2	protein_coding	protein_coding	protein_coding	protein_coding	14	127	2	1.64039	1.876165	2.11194	0.0110595	0.00306831	0.0929058	0.0494933
chr6	85638297	85638392	3151403	0	-	0.536842	(0.515,0.57]	chr6	293897	2	INTRON	INTRON	ENSG00000271793:SYNCRIP	ENSG00000271793.2:ENSG00000135316.19	ENST00000682083.1:ENST00000683074.1:ENST00000682504.1:ENST00000682106.1:ENST00000683364.1:ENST00000683436.1:ENST00000684220.1:ENST00000684462.1:ENST00000616122.5:ENST00000678528.1:ENST00000676637.1:ENST00000677771.1:ENST00000355238.11:ENST00000678878.1:ENST00000677481.1:ENST00000676630.1:ENST00000678618.1:ENST00000676542.1:ENST00000677059.1:ENST00000444272.2:ENST00000678899.1:ENST00000369622.8:ENST00000678355.1:ENST00000676688.1:ENST00000677514.1:ENST00000678816.1:ENST00000678930.1:ENST00000678589.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	11	93	2	1.49552	1.87616	2.2568	0.0385038	0.00118386	0.159277	0.0315575
chr5	131700690	131700789	2719771	0	-	0.292929	(0.28,0.32]	chr5	255678	13	INTRON	INTRON	FNIP1	ENSG00000217128.13	ENST00000510461.6:ENST00000307954.12:ENST00000307968.11:ENST00000511848.1	protein_coding	protein_coding	protein_coding	protein_coding	6	72	2	1.64432	1.87596	2.1076	0.0606133	0.0133585	0.171142	0.100772
chr7	105233818	105233918	3602348	0	-	0.29	(0.28,0.32]	chr7	336137	269	INTRON	INTRON	SRPK2	ENSG00000135250.17	ENST00000393651.8:ENST00000357311.7:ENST00000489828.5:ENST00000482897.5:ENST00000460391.5:ENST00000462282.5:ENST00000465112.5:ENST00000482862.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	72	2	1.64432	1.87596	2.1076	0.0606133	0.0133585	0.171142	0.100772
chr1	225414393	225414489	645615	0	-	0.354167	(0.35,0.378]	chr1	76357	14	INTRON	INTRON	LBR	ENSG00000143815.15	ENST00000272163.9:ENST00000338179.6:ENST00000651341.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	67	2	1.81752	1.87592	1.93432	0.0481438	0.0130467	0.153019	0.0994973
chrX	47204096	47204196	7655682	0	+	0.36	(0.35,0.378]	chrX	783250	4	SS5_PROX	SS5_PROX:INTRON	UBA1	ENSG00000130985.17	ENST00000377351.8:ENST00000335972.11:ENST00000490869.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	79	2	1.83633	1.87591	1.91549	0.0335602	0.00887698	0.134145	0.0849778
chr9	136834616	136834708	4222019	0	+	0.51087	(0.476,0.515]	chr9	387710	4	INTRON	INTRON	RABL6	ENSG00000196642.19	ENST00000311502.12:ENST00000484471.6:ENST00000371663.10:ENST00000357466.6:ENST00000464941.5:ENST00000629216.2:ENST00000466096.5:ENST00000461992.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	12	108	2	1.81156	1.875885	1.94021	0.0104707	0.00523626	0.0855777	0.0656295
chr1	173899265	173899365	257059	0	+	0.4	(0.378,0.408]	chr1	30716	133	UTR3	UTR3:EXON_MRNA	ZBTB37	ENSG00000185278.16	ENST00000367701.10	protein_coding	protein_coding	protein_coding	protein_coding	6	56	2	1.80483	1.87582	1.94681	0.0457723	0.0201276	0.149888	0.121243
chr3	108047792	108047886	1768845	0	-	0.287234	(0.28,0.32]	chr3	178905	1	INTRON	INTRON	CD47	ENSG00000196776.17	ENST00000361309.6:ENST00000355354.13:ENST00000471694.1:ENST00000517766.5:ENST00000398258.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	100	2	1.57043	1.875675	2.18092	0.0271832	0.0171404	0.123904	0.111072
chr20	4014044	4014144	7309393	0	-	0.46	(0.44,0.476]	chr20	744300	393	INTRON	INTRON	RNF24	ENSG00000101236.17	ENST00000336095.10:ENST00000358395.11:ENST00000545616.2	protein_coding	protein_coding	protein_coding	protein_coding	8	72	2	1.85904	1.8755199999999999	1.892	0.029889	0.00935701	0.129138	0.0858596
chr1	223993814	223993904	320932	0	+	0.6	(0.57,1]	chr1	36964	4	INTRON	INTRON	SEPTIN7P13	ENSG00000185495.10	ENST00000622033.4:ENST00000618315.4	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	8	38	2	1.72406	1.8754749999999998	2.02689	0.0261443	0.00839052	0.122221	0.0823837
chr5	36872351	36872450	2601844	0	-	0.575758	(0.57,1]	chr5	247327	11	EXON_LNCRNA	EXON_LNCRNA:INTRON	NIPBL-DT	ENSG00000285967.1	ENST00000647750.1:ENST00000649921.1:ENST00000647824.1	lncRNA	lncRNA	lncRNA	lncRNA	8	38	2	1.72406	1.8754749999999998	2.02689	0.0261443	0.00839052	0.122221	0.0823837
chr1	29069974	29070071	60534	0	+	0.340206	(0.32,0.35]	chr1	7745	8	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000647918.1:ENST00000646800.1:ENST00000644342.1:ENST00000646189.1:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000373798.5:ENST00000644600.1:ENST00000649674.1:ENST00000643173.1:ENST00000343067.9:ENST00000644780.1:ENST00000650265.1:ENST00000643604.1:ENST00000349460.9:ENST00000645111.1:ENST00000643302.1:ENST00000636666.1:ENST00000644848.1:ENST00000646871.1:ENST00000488277.1:ENST00000490308.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	66	2	1.60297	1.87545	2.14793	0.0647328	0.0110079	0.179192	0.0927187
chr19	21454906	21455005	7158753	0	-	0.323232	(0.32,0.35]	chr19	723692	30	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	ENSG00000268119	ENSG00000268119.7	ENST00000596705.5:ENST00000597444.6:ENST00000594557.1:ENST00000599993.7:ENST00000600469.7:ENST00000656526.1:ENST00000663704.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	18	190	2	1.60476	1.8754399999999998	2.14612	0.0152454	9.09979e-4	0.0997337	0.027712
chr17	61944585	61944684	6809636	0	-	0.262626	[0,0.28]	chr17	672797	21	UTR3	UTR3:EXON_MRNA	MED13	ENSG00000108510.10	ENST00000397786.7	protein_coding	protein_coding	protein_coding	protein_coding	6	79	2	1.80873	1.875385	1.94204	0.0544139	0.0234525	0.164972	0.128429
chr7	130070809	130070909	3413597	0	+	0.58	(0.57,1]	chr7	319096	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	KLHDC10	ENSG00000128607.14	ENST00000335420.10:ENST00000463413.1:ENST00000468226.1	protein_coding	protein_coding	protein_coding	protein_coding	6	28	2	1.46969	1.87536	2.28103	0.0586892	0.0151554	0.167915	0.108535
chr1	204553255	204553355	297801	0	+	0.35	(0.32,0.35]	chr1	34331	37	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	MDM4	ENSG00000198625.14	ENST00000367183.7:ENST00000391947.6:ENST00000454264.6:ENST00000612738.4:ENST00000614459.4:ENST00000616250.4:ENST00000367182.8:ENST00000463049.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	92	2	1.47118	1.8752849999999999	2.27939	0.0345598	0.00844518	0.148144	0.0776969
chr2	26787190	26787289	715759	0	+	0.545455	(0.515,0.57]	chr2	82664	5	INTRON	INTRON	CENPA	ENSG00000115163.15	ENST00000475662.5:ENST00000472719.5:ENST00000335756.9:ENST00000233505.12:ENST00000419525.5:ENST00000460030.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	12	92	2	1.55764	1.875245	2.19285	0.0183076	0.00258921	0.11576	0.0452934
chr3	48534216	48534315	1688680	0	-	0.474747	(0.44,0.476]	chr3	172531	82	INTRON	INTRON	PFKFB4	ENSG00000114268.12	ENST00000232375.8:ENST00000490115.5:ENST00000383734.6:ENST00000416568.5:ENST00000417753.5:ENST00000445633.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	55	2	1.60467	1.8752	2.14573	0.0411383	0.0238593	0.1451	0.129075
chr6	15326424	15326524	2823751	0	+	0.5	(0.476,0.515]	chr6	265192	115	INTRON	INTRON	JARID2	ENSG00000008083.14	ENST00000341776.7:ENST00000397311.4	protein_coding	protein_coding	protein_coding	protein_coding	7	59	2	1.33919	1.8752	2.41121	0.06316	0.0110342	0.197199	0.0873897
chr14	91508607	91508706	5956165	0	-	0.313131	(0.28,0.32]	chr14	565483	175	INTRON	INTRON	PPP4R3A	ENSG00000100796.18	ENST00000554943.6:ENST00000554684.5:ENST00000555462.5:ENST00000554308.5:ENST00000554390.5:ENST00000555029.5:ENST00000557018.5:ENST00000554511.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:nonsense_mediated_decay	5	60	2	1.61031	1.875165	2.14002	0.0600513	0.0304107	0.190658	0.130461
chr4	163137550	163137650	2281014	0	-	0.36	(0.35,0.378]	chr4	221575	3	SS3_PROX	SS3_PROX:INTRON	NAF1	ENSG00000145414.9	ENST00000509434.5:ENST00000422287.6:ENST00000274054.3:ENST00000509232.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	38	2	1.58862	1.8751600000000002	2.1617	0.0771502	0.0615516	0.196285	0.193423
chr9	128231190	128231288	4203341	0	+	0.418367	(0.408,0.44]	chr9	384064	47	INTRON	INTRON	DNM1	ENSG00000106976.21	ENST00000372923.8:ENST00000341179.11:ENST00000475805.5:ENST00000393594.7:ENST00000628346.2:ENST00000486160.3:ENST00000627543.2:ENST00000627061.2:ENST00000634267.2:ENST00000637999.1:ENST00000441149.6:ENST00000482638.6:ENST00000637317.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	87	2	1.4419	1.87514	2.30838	0.0327262	0.00547703	0.133816	0.0671198
chr12	76081533	76081633	5370194	0	-	0.36	(0.35,0.378]	chr12	512329	69	INTRON	INTRON	NAP1L1	ENSG00000187109.15	ENST00000618691.5:ENST00000393263.7:ENST00000431879.7:ENST00000547773.5:ENST00000544816.5:ENST00000542344.5:ENST00000535020.6:ENST00000549596.5:ENST00000552342.5:ENST00000548044.5:ENST00000550934.5:ENST00000551992.5:ENST00000548273.5:ENST00000551600.5:ENST00000547704.5:ENST00000549988.5:ENST00000547479.5:ENST00000549479.1:ENST00000551500.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	12	119	2	1.65058	1.87501	2.09944	0.0209998	0.00266508	0.112251	0.0476626
chr1	120850901	120850985	536771	0	-	0.464286	(0.44,0.476]	chr1	63057	2	EXON_SMALL	EXON_SMALL:EXON_LNCRNA	ENSG00000287979:RNVU1-19	ENSG00000287979.1:ENSG00000275538.1	ENST00000664186.1:ENST00000613023.1	snRNA	snRNA	snRNA:lncRNA	snRNA:lncRNA	15	154	2	1.17605	1.874945	2.57384	0.060782	1.97109e-4	0.192641	0.0128671
chr11	46787113	46787210	4948151	0	-	0.474227	(0.44,0.476]	chr11	463765	21	INTRON	INTRON	CKAP5	ENSG00000175216.15	ENST00000529230.6:ENST00000312055.9:ENST00000354558.7	protein_coding	protein_coding	protein_coding	protein_coding	11	102	2	1.57262	1.87485	2.17708	0.0230575	0.00336887	0.126603	0.0516668
chr1	75788381	75788478	144636	0	+	0.474227	(0.44,0.476]	chr1	16320	9	EXON_LNCRNA	EXON_LNCRNA:INTRON	RABGGTB	ENSG00000137955.16	ENST00000496055.5:ENST00000485459.5:ENST00000473406.5:ENST00000370826.3:ENST00000497648.1:ENST00000319942.8:ENST00000462042.5:ENST00000470201.5:ENST00000471759.5:ENST00000491266.5:ENST00000461653.5:ENST00000489450.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	49	452	2	1.61929	1.874795	2.1303	0.00232878	1.92674e-4	0.0442989	0.0127226
chr12	110722201	110722269	5411319	0	-	0.411765	(0.408,0.44]	chr12	516714	1	CDS	CDS:UTR3:EXON_MRNA:SS5_PROX:INTRON	PPP1CC	ENSG00000186298.12	ENST00000335007.10:ENST00000340766.9:ENST00000550261.5:ENST00000546904.1:ENST00000551582.1:ENST00000553024.1:ENST00000546933.5:ENST00000550991.5:ENST00000551676.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	116	2	1.53079	1.874765	2.21874	0.0173197	0.00286408	0.112111	0.0474836
chr15	72487100	72487200	6059288	0	+	0.36	(0.35,0.378]	chr15	576852	117	INTRON	INTRON	ARIH1	ENSG00000166233.15	ENST00000379887.9:ENST00000570085.5:ENST00000564062.1:ENST00000567762.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	65	2	1.55918	1.87476	2.19034	0.0326427	0.023941	0.145164	0.119443
chr12	9665709	9665807	5075497	0	+	0.520408	(0.515,0.57]	chr12	479873	2	INTRON	INTRON	CLEC2D	ENSG00000069493.15	ENST00000536355.5	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	7	55	2	1.43029	1.8746550000000002	2.31902	0.0645632	0.00493032	0.179192	0.0646039
chr16	16087391	16087491	6309153	0	+	0.4	(0.378,0.408]	chr16	603613	4	SS5_PROX	SS5_PROX:INTRON	ABCC1	ENSG00000103222.20	ENST00000678422.1:ENST00000677164.1:ENST00000399408.7:ENST00000572882.3:ENST00000399410.8:ENST00000575422.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	50	2	1.77782	1.874625	1.97143	0.0398704	0.0388177	0.161534	0.143072
chr19	5706659	5706759	7124570	0	-	0.48	(0.476,0.515]	chr19	717132	2	SS5_PROX	SS5_PROX:INTRON	LONP1	ENSG00000196365.12	ENST00000360614.8:ENST00000587552.5:ENST00000540670.6:ENST00000593119.5:ENST00000585374.5:ENST00000590558.5:ENST00000590729.5:ENST00000590206.1:ENST00000588589.5:ENST00000587365.1:ENST00000591321.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	71	2	1.73294	1.8745599999999998	2.01618	0.0180082	0.0174121	0.112632	0.106756
chr6	97236879	97236979	3164300	0	-	0.52	(0.515,0.57]	chr6	295106	25	INTRON	INTRON	MMS22L	ENSG00000146263.12	ENST00000683635.1:ENST00000275053.8:ENST00000369251.6:ENST00000509383.5:ENST00000510018.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	48	2	1.63184	1.8745399999999999	2.11724	0.0545832	0.0110335	0.165292	0.0927187
chr21	10432170	10432270	7368316	0	+	0.52	(0.515,0.57]	chr21	751975	169	INTRON	INTRON	BAGE2	ENSG00000187172.15	ENST00000474011.5:ENST00000470054.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	8	61	2	1.54678	1.874455	2.20213	0.0324987	0.00853365	0.145164	0.0780043
chr1	235324913	235325013	663830	0	-	0.26	[0,0.28]	chr1	78552	638	INTRON	INTRON	ARID4B	ENSG00000054267.22	ENST00000349213.7:ENST00000366603.6:ENST00000264183.9:ENST00000421364.5:ENST00000491632.5:ENST00000418304.1:ENST00000466653.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	69	2	1.59412	1.874345	2.15457	0.0729426	0.0269306	0.189278	0.135288
chr10	35364663	35364763	4424784	0	+	0.31	(0.28,0.32]	chr10	407899	271	INTRON	INTRON	CCNY	ENSG00000108100.18	ENST00000374706.5:ENST00000490012.6:ENST00000493157.6:ENST00000374704.8:ENST00000265375.13:ENST00000339497.7:ENST00000492478.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	92	2	1.84658	1.8743400000000001	1.9021	0.0304779	0.0128582	0.130699	0.0990564
chr1	245084024	245084106	349543	0	+	0.451219	(0.44,0.476]	chr1	40459	3	SS5_PROX	SS5_PROX:INTRON	EFCAB2	ENSG00000203666.13	ENST00000366523.6:ENST00000391837.7:ENST00000366522.6:ENST00000497591.5:ENST00000447569.6:ENST00000473686.5:ENST00000366521.7:ENST00000487845.5:ENST00000495271.5:ENST00000425550.5:ENST00000427529.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	68	2	1.41577	1.8742450000000002	2.33272	0.042743	0.0129984	0.148082	0.0991656
chr7	152403146	152403245	3680965	0	-	0.424242	(0.408,0.44]	chr7	341660	441	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000682301.1:ENST00000452749.2:ENST00000680867.1:ENST00000683800.1:ENST00000684278.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	110	2	1.51451	1.87423	2.23395	0.0313913	0.001262	0.13151	0.0329641
chr10	80181215	80181295	4658016	0	-	0.45	(0.44,0.476]	chr10	429144	2	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	ANXA11	ENSG00000122359.18	ENST00000372231.7:ENST00000438331.5:ENST00000422982.8:ENST00000463657.1:ENST00000474545.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	56	2	1.71574	1.8742	2.03266	0.045256	0.0155853	0.149888	0.109411
chr11	34054644	34054738	4767677	0	+	0.521277	(0.515,0.57]	chr11	440943	6	INTRON	INTRON	CAPRIN1	ENSG00000135387.21	ENST00000341394.9:ENST00000528856.5:ENST00000389645.7:ENST00000534042.5:ENST00000534825.5:ENST00000532820.5:ENST00000530820.5:ENST00000529307.1:ENST00000526494.5:ENST00000532755.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	61	2	1.33814	1.87418	2.41022	0.063703	0.00332441	0.177689	0.0528673
chr7	152379861	152379961	3680732	0	-	0.55	(0.515,0.57]	chr7	341660	208	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000682301.1:ENST00000452749.2:ENST00000680867.1:ENST00000683800.1:ENST00000684278.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	91	2	1.85278	1.8741349999999999	1.89549	0.0094473	0.00514125	0.0817766	0.064995
chr10	102162834	102162928	4512626	0	+	0.393617	(0.378,0.408]	chr10	415675	7	UTR3	UTR3:EXON_MRNA:INTRON	NOLC1	ENSG00000166197.17	ENST00000405356.5:ENST00000605788.6:ENST00000603946.5:ENST00000370007.5:ENST00000477977.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	67	2	1.56313	1.8741249999999998	2.18512	0.0474151	0.00902136	0.153019	0.0851259
chr19	11124537	11124636	7017189	0	+	0.393939	(0.378,0.408]	chr19	697502	8	INTRON	INTRON	LDLR	ENSG00000130164.14	ENST00000557933.5:ENST00000558518.6:ENST00000545707.5:ENST00000535915.5:ENST00000455727.6:ENST00000558013.5:ENST00000252444.9	protein_coding	protein_coding	protein_coding	protein_coding	7	67	2	1.56313	1.8741249999999998	2.18512	0.0474151	0.00902136	0.153019	0.0851259
chr15	92923035	92923133	6103922	0	+	0.428571	(0.408,0.44]	chr15	581409	12	INTRON	INTRON	ENSG00000279765:CHD2	ENSG00000279765.3:ENSG00000173575.22	ENST00000629685.2:ENST00000630790.1:ENST00000626874.2:ENST00000394196.9:ENST00000635856.1:ENST00000420239.7:ENST00000628375.2:ENST00000625990.3:ENST00000626782.2:ENST00000629136.1:ENST00000636861.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	39	2	1.81572	1.874075	1.93243	0.0626779	0.0441194	0.175915	0.162255
chr7	76478402	76478502	3340061	0	+	0.44	(0.408,0.44]	chr7	311089	2	SS5_PROX	SS5_PROX:INTRON	DTX2	ENSG00000091073.20	ENST00000425780.5:ENST00000451769.5:ENST00000456590.5:ENST00000324432.9:ENST00000430490.7:ENST00000446600.5:ENST00000457529.5:ENST00000492339.5:ENST00000413936.6:ENST00000423646.5:ENST00000438930.5:ENST00000442516.1:ENST00000429179.1:ENST00000435861.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	39	2	1.81572	1.874075	1.93243	0.0626779	0.0441194	0.175915	0.162255
chr8	129422214	129422314	4059493	0	-	0.41	(0.408,0.44]	chr8	369584	196	INTRON	INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1:ENST00000676273.1:ENST00000667643.1:ENST00000668791.1:ENST00000663716.1:ENST00000663572.1:ENST00000676148.1:ENST00000667962.1:ENST00000674877.1:ENST00000675316.1:ENST00000674656.1:ENST00000446592.7:ENST00000667341.1:ENST00000675186.1:ENST00000652971.1:ENST00000661447.1:ENST00000674863.1:ENST00000675498.1:ENST00000675527.1:ENST00000676108.1:ENST00000657647.1:ENST00000675589.1:ENST00000675913.1:ENST00000675109.1:ENST00000671632.1:ENST00000671311.1:ENST00000676099.1:ENST00000660652.1:ENST00000675522.1:ENST00000675183.1:ENST00000658861.1:ENST00000663991.1:ENST00000675044.1:ENST00000675435.1:ENST00000674639.1:ENST00000676069.1:ENST00000675532.1:ENST00000674762.1:ENST00000523151.6:ENST00000675948.1:ENST00000665364.1:ENST00000657251.1:ENST00000675166.1:ENST00000674883.1:ENST00000675867.1:ENST00000674580.1:ENST00000675393.1:ENST00000520048.1:ENST00000674906.1:ENST00000676030.1:ENST00000670588.1:ENST00000675072.1:ENST00000664936.1:ENST00000652914.1:ENST00000657069.1	lncRNA	lncRNA	lncRNA	lncRNA	4	39	2	1.81572	1.874075	1.93243	0.0626779	0.0441194	0.175915	0.162255
chr19	886993	887090	7110690	0	-	0.484536	(0.476,0.515]	chr19	714112	4	INTRON	INTRON	MED16	ENSG00000175221.16	ENST00000395808.7:ENST00000312090.10:ENST00000325464.6:ENST00000606248.5:ENST00000586017.5:ENST00000592943.5:ENST00000606828.2:ENST00000592373.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	53	2	1.48023	1.87406	2.26789	0.0559072	0.0176567	0.18407	0.105233
chr16	70525517	70525611	6385150	0	+	0.457447	(0.44,0.476]	chr16	613859	1	INTRON	INTRON	SF3B3	ENSG00000189091.13	ENST00000566095.6:ENST00000577085.1:ENST00000302516.10:ENST00000567654.1:ENST00000564899.1	protein_coding	protein_coding	protein_coding	protein_coding	9	82	2	1.74644	1.8740450000000002	2.00165	0.0165016	0.0109867	0.110334	0.0873897
chr2	135060829	135060927	872754	0	+	0.459184	(0.44,0.476]	chr2	97739	4	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	RAB3GAP1	ENSG00000115839.19	ENST00000539493.3:ENST00000688088.1:ENST00000693554.1:ENST00000690785.1:ENST00000689880.1:ENST00000264158.13:ENST00000686403.1:ENST00000690208.1:ENST00000691478.1:ENST00000686114.1:ENST00000685967.1:ENST00000442034.5:ENST00000687199.1:ENST00000691339.1:ENST00000688182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	13	118	2	1.38395	1.8740350000000001	2.3641200000000002	0.0392605	6.33326e-4	0.143072	0.0227457
chr7	6479916	6480015	3478326	0	-	0.383838	(0.378,0.408]	chr7	325469	53	INTRON	INTRON	DAGLB:KDELR2	ENSG00000164535.15:ENSG00000136240.10	ENST00000436575.5:ENST00000463747.1:ENST00000258739.9:ENST00000490996.1:ENST00000382267.3:ENST00000462052.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	58	2	1.35931	1.8740199999999998	2.38873	0.0458857	0.0393907	0.161534	0.149888
chr19	11122090	11122187	7017164	0	+	0.494845	(0.476,0.515]	chr19	697496	12	INTRON	INTRON	LDLR	ENSG00000130164.14	ENST00000557933.5:ENST00000558518.6:ENST00000545707.5:ENST00000535915.5:ENST00000455727.6:ENST00000558013.5:ENST00000252444.9	protein_coding	protein_coding	protein_coding	protein_coding	23	195	2	1.44167	1.8739150000000002	2.30616	0.0127667	3.97002e-4	0.0926667	0.0178921
chr16	21515229	21515329	6461509	0	-	0.58	(0.57,1]	chr16	623383	87	INTRON	INTRON	SMG1P3	ENSG00000180747.15	ENST00000522841.6:ENST00000437413.2:ENST00000435197.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	8	37	2	1.73563	1.873895	2.01216	0.017048	0.0163389	0.110899	0.101571
chr16	23572489	23572589	6323214	0	+	0.61	(0.57,1]	chr16	605575	20	UTR3	UTR3:EXON_MRNA	UBFD1	ENSG00000103353.16	ENST00000567212.5:ENST00000395878.8	protein_coding	protein_coding	protein_coding	protein_coding	8	37	2	1.73563	1.873895	2.01216	0.017048	0.0163389	0.110899	0.101571
chr22	21689891	21689986	7482707	0	+	0.631579	(0.57,1]	chr22	763393	12	EXON_MRNA	EXON_MRNA:INTRON	PPIL2	ENSG00000100023.20	ENST00000679795.1:ENST00000679540.1:ENST00000679580.1:ENST00000681286.1:ENST00000680061.1:ENST00000681338.1:ENST00000681956.1:ENST00000679827.1:ENST00000679534.1:ENST00000679479.1:ENST00000680393.1:ENST00000680426.1:ENST00000335025.12:ENST00000498109.2:ENST00000398831.8:ENST00000681394.1:ENST00000679477.1:ENST00000626352.2:ENST00000417788.5:ENST00000681791.1:ENST00000679692.1:ENST00000680962.1:ENST00000679857.1:ENST00000680094.1:ENST00000680434.1:ENST00000680109.1:ENST00000406385.1:ENST00000681137.1:ENST00000680860.1:ENST00000680183.1:ENST00000446951.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	37	2	1.50772	1.87372	2.23972	0.0388955	0.00670296	0.16071	0.0707084
chr2	55041916	55042016	1121324	0	-	0.29	(0.28,0.32]	chr2	120163	133	INTRON	INTRON	RTN4	ENSG00000115310.19	ENST00000404909.5:ENST00000394611.6:ENST00000317610.11:ENST00000357732.8:ENST00000337526.11:ENST00000357376.7:ENST00000405240.5:ENST00000438462.1:ENST00000427710.5	protein_coding	protein_coding	protein_coding	protein_coding	8	71	2	1.35386	1.8736650000000001	2.39347	0.0504457	0.0432643	0.162255	0.156383
chr3	33827579	33827621	1394683	0	+	0.380952	(0.378,0.408]	chr3	146064	1	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	PDCD6IP	ENSG00000170248.15	ENST00000457054.6:ENST00000648706.1:ENST00000307296.8:ENST00000412887.5:ENST00000482561.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	69	2	1.85455	1.87353	1.89251	0.0251428	0.0192049	0.133404	0.108861
chr22	18560836	18560935	7550960	0	-	0.454545	(0.44,0.476]	chr22	771829	79	INTRON	INTRON	PI4KAP1	ENSG00000274602.5	ENST00000612500.4:ENST00000611748.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	15	134	2	1.77947	1.87351	1.96755	0.00926895	0.00244243	0.0817766	0.0456956
chr22	21836833	21836933	7561078	0	-	0.44	(0.408,0.44]	chr22	773388	286	INTRON	INTRON	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	21	185	2	1.48656	1.87305	2.25954	0.0102872	7.94858e-4	0.0891276	0.0260201
chr1	90997061	90997161	502278	0	-	0.41	(0.408,0.44]	chr1	59504	143	INTRON	INTRON	ZNF644	ENSG00000122482.22	ENST00000370440.5:ENST00000337393.10:ENST00000347275.9:ENST00000361321.5:ENST00000467231.5:ENST00000498303.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	47	2	1.81572	1.87287	1.93002	0.0626779	0.022095	0.175915	0.123903
chr6	17661252	17661352	3065746	0	-	0.44	(0.408,0.44]	chr6	284825	2	SS5_PROX	SS5_PROX:INTRON	NUP153	ENSG00000124789.12	ENST00000613258.4:ENST00000537253.5:ENST00000262077.3	protein_coding	protein_coding	protein_coding	protein_coding	13	102	2	1.07178	1.87285	2.67392	0.0734466	0.00106946	0.190238	0.0300133
chr7	30630454	30630554	3301815	0	+	0.34	(0.32,0.35]	chr7	306608	19	EXON_MRNA	EXON_MRNA:INTRON	GARS1	ENSG00000106105.15	ENST00000675051.1:ENST00000470392.2:ENST00000674643.1:ENST00000675529.1:ENST00000674807.1:ENST00000675810.1:ENST00000676088.1:ENST00000674815.1:ENST00000676403.1:ENST00000485784.2:ENST00000676210.1:ENST00000389266.8:ENST00000675693.1:ENST00000676259.1:ENST00000675651.1:ENST00000674616.1:ENST00000674737.1:ENST00000675859.1:ENST00000676140.1:ENST00000674969.1:ENST00000676164.1:ENST00000675886.1:ENST00000444666.6:ENST00000675587.1:ENST00000674851.1:ENST00000675863.1:ENST00000465748.2:ENST00000496643.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	23	174	2	1.20688	1.8728449999999999	2.53881	0.0241999	0.00317745	0.130466	0.0503705
chr16	88644473	88644566	6539116	0	-	0.44086	(0.44,0.476]	chr16	633663	3	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	CYBA	ENSG00000051523.12	ENST00000696156.1:ENST00000696159.1:ENST00000696160.1:ENST00000696157.1:ENST00000696158.1:ENST00000261623.8:ENST00000696163.1:ENST00000696162.1:ENST00000696161.1:ENST00000565588.6:ENST00000566534.5:ENST00000566229.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	57	2	1.75627	1.872825	1.98938	0.0380723	0.0198602	0.157702	0.109608
chr9	37136536	37136636	4117818	0	+	0.55	(0.515,0.57]	chr9	375372	92	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000322831.6:ENST00000461038.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	83	2	1.36316	1.87262	2.38208	0.0375126	0.00191752	0.156054	0.0395751
chr1	179874397	179874496	593435	0	-	0.313131	(0.28,0.32]	chr1	71117	8	EXON_LNCRNA	EXON_LNCRNA:INTRON	TOR1AIP2	ENSG00000169905.13	ENST00000367612.7:ENST00000609928.6:ENST00000482587.5:ENST00000495650.1:ENST00000474318.1:ENST00000483123.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	14	162	2	1.6762	1.8726099999999999	2.06902	0.0113403	0.00533241	0.0950029	0.0640926
chr8	37870119	37870219	3935645	0	-	0.27	[0,0.28]	chr8	360554	3	SS5_PROX	SS5_PROX:INTRON	RAB11FIP1	ENSG00000156675.16	ENST00000330843.9:ENST00000287263.8:ENST00000522727.5:ENST00000523182.5:ENST00000522774.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	11	133	2	1.53984	1.8726000000000003	2.20536	0.0214158	0.0138742	0.123819	0.0954405
chr19	52656783	52656882	7206794	0	-	0.444444	(0.44,0.476]	chr19	731404	7	INTRON	INTRON	ZNF83:ENSG00000269825	ENSG00000167766.20:ENSG00000269825.2	ENST00000600714.5:ENST00000601257.5:ENST00000594682.6:ENST00000687234.1:ENST00000598536.5:ENST00000595171.5:ENST00000596440.5:ENST00000602232.5:ENST00000598322.2:ENST00000598190.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	64	2	1.84134	1.8725749999999999	1.90381	0.0260626	0.0175428	0.122153	0.11319
chr7	2367925	2368020	3269764	0	+	0.505263	(0.476,0.515]	chr7	303838	5	INTRON	INTRON	EIF3B	ENSG00000106263.19	ENST00000360876.9:ENST00000397011.2:ENST00000466199.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	47	2	1.72558	1.872555	2.01953	0.0767648	0.0163662	0.196164	0.109586
chr12	64624438	64624538	5155137	0	+	0.44	(0.408,0.44]	chr12	488093	129	INTRON	INTRON	RASSF3	ENSG00000153179.13	ENST00000637125.1:ENST00000542104.6:ENST00000283172.8:ENST00000336061.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	47	2	1.6306	1.872535	2.11447	0.0544158	0.0285207	0.182272	0.12666
chr5	54070332	54070432	2618509	0	-	0.56	(0.515,0.57]	chr5	248837	222	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	40	2	1.63184	1.872485	2.11313	0.0545832	0.0256725	0.165292	0.133676
chr5	137939140	137939239	2729837	0	-	0.383838	(0.378,0.408]	chr5	256881	13	UTR3	UTR3:EXON_MRNA	FAM13B	ENSG00000031003.11	ENST00000689681.1:ENST00000033079.7	protein_coding	protein_coding	protein_coding	protein_coding	11	100	2	1.70456	1.8722850000000002	2.04001	0.0108115	0.00996995	0.0920575	0.08427
chr14	31001760	31001860	5857627	0	-	0.56	(0.515,0.57]	chr14	556508	374	INTRON	INTRON	STRN3	ENSG00000196792.12	ENST00000355683.9:ENST00000357479.10:ENST00000555358.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	56	2	1.5318	1.872265	2.21273	0.0258209	0.0196151	0.133676	0.109486
chr6	15319325	15319425	2823680	0	+	0.39	(0.378,0.408]	chr6	265192	44	INTRON	INTRON	JARID2	ENSG00000008083.14	ENST00000341776.7:ENST00000397311.4	protein_coding	protein_coding	protein_coding	protein_coding	16	139	2	1.42112	1.8722150000000002	2.32331	0.0174084	0.00189565	0.112632	0.0393001
chr7	138462001	138462101	3434658	0	+	0.44	(0.408,0.44]	chr7	319959	3	INTRON	INTRON	TRIM24	ENSG00000122779.18	ENST00000343526.9:ENST00000415680.6:ENST00000497516.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	65	2	1.3378	1.8722050000000001	2.40661	0.050805	0.011475	0.175989	0.0888882
chr4	150674689	150674789	2268318	0	-	0.51	(0.476,0.515]	chr4	220713	752	INTRON	INTRON	LRBA	ENSG00000198589.14	ENST00000357115.9:ENST00000651943.2:ENST00000510413.5:ENST00000509835.5:ENST00000651695.1:ENST00000651035.1:ENST00000507224.5:ENST00000513021.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	54	2	1.54629	1.87219	2.19809	0.0484352	0.020317	0.153635	0.121522
chr7	87162044	87162143	3345719	0	+	0.323232	(0.32,0.35]	chr7	311631	62	INTRON	INTRON	DMTF1	ENSG00000135164.19	ENST00000413276.6:ENST00000447863.5:ENST00000579677.5:ENST00000425406.5:ENST00000446796.6:ENST00000420131.5:ENST00000414630.6:ENST00000547146.6:ENST00000579850.5:ENST00000453049.5:ENST00000331242.12:ENST00000430405.7:ENST00000449088.7:ENST00000448598.5:ENST00000428819.5:ENST00000432937.6:ENST00000584619.5:ENST00000432366.6:ENST00000423590.6:ENST00000394703.9:ENST00000584457.5:ENST00000580710.5:ENST00000579592.5:ENST00000434534.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	30	288	2	1.36934	1.8719899999999998	2.37464	0.0115333	5.08353e-4	0.0960897	0.020816
chr17	50747300	50747399	6627267	0	+	0.343434	(0.32,0.35]	chr17	647245	2	INTRON	INTRON	LUC7L3	ENSG00000108848.16	ENST00000393227.6:ENST00000505658.6:ENST00000240304.5:ENST00000508482.5:ENST00000504065.5:ENST00000509487.1:ENST00000511974.5:ENST00000513969.5:ENST00000503728.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	60	2	1.437	1.8718650000000001	2.30673	0.0584434	0.0386366	0.167723	0.159793
chr8	123194746	123194844	3851216	0	+	0.459184	(0.44,0.476]	chr8	354813	2	INTRON	INTRON	FAM83A	ENSG00000147689.17	ENST00000536633.2:ENST00000518448.5:ENST00000690554.1:ENST00000522648.5:ENST00000276699.10:ENST00000521468.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	64	2	1.7965	1.8718650000000001	1.94723	0.0227424	0.0205549	0.122348	0.117618
chr12	124862279	124862379	5446569	0	-	0.46	(0.44,0.476]	chr12	521287	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	SCARB1	ENSG00000073060.17	ENST00000339570.9:ENST00000261693.11:ENST00000679605.1:ENST00000681686.1:ENST00000680926.1:ENST00000680556.1:ENST00000680982.1:ENST00000680596.1:ENST00000415380.6:ENST00000681117.1:ENST00000538291.5:ENST00000546215.5:ENST00000535005.5:ENST00000539320.3:ENST00000545493.1:ENST00000541661.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	48	2	1.81283	1.871835	1.93084	0.0443175	0.0343005	0.162302	0.135641
chr22	19091287	19091387	7551703	0	-	0.46	(0.44,0.476]	chr22	771903	14	INTRON	INTRON	DGCR2	ENSG00000070413.20	ENST00000537045.5:ENST00000545799.5:ENST00000263196.12:ENST00000389262.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	48	2	1.81283	1.871835	1.93084	0.0443175	0.0343005	0.162302	0.135641
chr2	61536491	61536588	1131216	0	-	0.402062	(0.378,0.408]	chr2	121647	4	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	XPO1	ENSG00000082898.19	ENST00000676553.1:ENST00000677556.1:ENST00000677814.1:ENST00000676771.1:ENST00000677803.1:ENST00000677239.1:ENST00000678790.1:ENST00000677928.1:ENST00000678182.1:ENST00000677150.1:ENST00000678172.1:ENST00000678360.1:ENST00000678081.1:ENST00000676889.1:ENST00000676783.1:ENST00000679035.1:ENST00000677422.1:ENST00000677417.1:ENST00000677813.1:ENST00000676999.1:ENST00000401558.7:ENST00000428210.5:ENST00000677290.1:ENST00000677850.1:ENST00000451765.6:ENST00000676789.1:ENST00000678741.1:ENST00000404992.6:ENST00000406957.5:ENST00000443240.5:ENST00000420673.6:ENST00000481214.1:ENST00000449444.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	38	317	2	1.68011	1.87172	2.06333	0.00146738	0.00143077	0.034732	0.0347139
chr16	85559560	85559660	6415427	0	+	0.6	(0.57,1]	chr16	615470	28	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	8	37	2	1.3512	1.871705	2.39221	0.0618425	0.00352602	0.174429	0.0546236
chr21	6662358	6662457	7425797	0	-	0.292929	(0.28,0.32]	chr21	757499	24	INTRON	INTRON	ENSG00000280145	ENSG00000280145.3	ENST00000625185.3:ENST00000624846.3:ENST00000623313.1:ENST00000624965.1	lncRNA	lncRNA	lncRNA	lncRNA	9	105	2	1.78733	1.871705	1.95608	0.0276087	0.00845157	0.123904	0.0828457
chr1	28741445	28741536	58391	0	+	0.43956	(0.408,0.44]	chr1	7597	7	INTRON	INTRON	YTHDF2	ENSG00000198492.16	ENST00000542507.5:ENST00000474884.5:ENST00000373812.8:ENST00000541996.5:ENST00000478283.5:ENST00000496288.5:ENST00000476976.1:ENST00000475796.5:ENST00000468863.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	100	2	1.4846	1.87167	2.25874	0.034616	0.00181031	0.136674	0.0393822
chr16	23893556	23893655	6324336	0	+	0.272727	[0,0.28]	chr16	605700	7	EXON_LNCRNA	EXON_LNCRNA:INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000645517.1:ENST00000498739.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	147	2	1.76391	1.871575	1.97924	0.024511	0.00628008	0.12011	0.0722266
chr19	1038581	1038678	6993294	0	+	0.546392	(0.515,0.57]	chr19	692537	8	UTR3	UTR3:EXON_MRNA	CNN2	ENSG00000064666.15	ENST00000263097.9:ENST00000348419.7:ENST00000565096.6:ENST00000562958.6:ENST00000564572.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	43	333	2	1.76997	1.87149	1.97301	0.0012246100000000001	2.92932e-4	0.032497	0.0158597
chr2	87806096	87806195	1172999	0	-	0.414141	(0.408,0.44]	chr2	125238	51	INTRON	INTRON	RGPD2	ENSG00000185304.16	ENST00000398146.5	protein_coding	protein_coding	protein_coding	protein_coding	7	60	2	1.62843	1.8714499999999998	2.11447	0.0285207	0.025242	0.133676	0.12666
chr6	147351627	147351727	2990201	0	+	0.27	[0,0.28]	chr6	280116	119	INTRON	INTRON	STXBP5	ENSG00000164506.15	ENST00000321680.11:ENST00000367481.7:ENST00000367480.7:ENST00000367475.6:ENST00000392291.2	protein_coding	protein_coding	protein_coding	protein_coding	10	133	2	1.54903	1.871445	2.19386	0.0373034	0.00599636	0.13989	0.0700606
chr9	130756154	130756254	4214286	0	+	0.4	(0.378,0.408]	chr9	386427	413	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000393293.4	protein_coding	protein_coding	protein_coding	protein_coding	17	146	2	1.23172	1.87142	2.51112	0.0383705	5.0824e-4	0.142098	0.0202333
chr16	88717901	88717994	6539486	0	-	0.548387	(0.515,0.57]	chr16	633839	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	PIEZO1	ENSG00000103335.22	ENST00000301015.14:ENST00000419505.5:ENST00000484567.6:ENST00000495568.7:ENST00000466823.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	97	2	1.57699	1.8713549999999999	2.16572	0.0135679	0.0029374	0.101463	0.0483262
chr7	65000781	65000881	3537640	0	-	0.24	[0,0.28]	chr7	329951	70	INTRON	INTRON	ZNF117:ERV3-1	ENSG00000152926.16:ENSG00000213462.5	ENST00000487644.1:ENST00000394323.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	88	2	1.68134	1.87133	2.06132	0.0408268	0.0251592	0.1451	0.133479
chr11	62578060	62578160	4959644	0	-	0.33	(0.32,0.35]	chr11	466286	1	SS5_PROX	SS5_PROX:INTRON	TUT1	ENSG00000149016.16	ENST00000308436.11:ENST00000476907.6	protein_coding	protein_coding	protein_coding	protein_coding	5	55	2	1.60297	1.87121	2.13945	0.0647328	0.0254517	0.179192	0.133676
chr20	17965612	17965711	7320540	0	-	0.464646	(0.44,0.476]	chr20	745337	28	INTRON	INTRON	SNX5	ENSG00000089006.17	ENST00000377768.7:ENST00000490175.5:ENST00000377759.9:ENST00000431277.5:ENST00000419004.2:ENST00000474883.5:ENST00000469704.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	19	167	2	1.73773	1.87121	2.00469	0.00408027	0.00270804	0.058121	0.0467523
chr12	104471320	104471420	5210827	0	+	0.36	(0.35,0.378]	chr12	493315	134	INTRON	INTRON	CHST11	ENSG00000171310.11	ENST00000303694.6:ENST00000547956.1:ENST00000549260.5:ENST00000546689.1	protein_coding	protein_coding	protein_coding	protein_coding	5	51	2	1.5118	1.871115	2.23043	0.0789277	0.0187487	0.198963	0.117523
chr5	173889436	173889535	2549751	0	+	0.292929	(0.28,0.32]	chr5	243410	12	UTR5	UTR5:EXON_MRNA	CPEB4	ENSG00000113742.14	ENST00000265085.10:ENST00000334035.9:ENST00000520867.5:ENST00000519835.5	protein_coding	protein_coding	protein_coding	protein_coding	6	68	2	1.64429	1.871115	2.09794	0.0365539	0.0340483	0.153932	0.134863
chr4	470277	470377	2092882	0	-	0.32	(0.28,0.32]	chr4	206783	255	INTRON	INTRON	ABCA11P:ZNF721	ENSG00000251595.7:ENSG00000182903.16	ENST00000451020.6:ENST00000514396.5:ENST00000507854.1:ENST00000515578.5:ENST00000506646.5:ENST00000507078.1:ENST00000511833.3:ENST00000338977.5:ENST00000505900.1	protein_coding	protein_coding	protein_coding:transcribed_processed_pseudogene	protein_coding:nonsense_mediated_decay:processed_transcript	6	68	2	1.56118	1.8710499999999999	2.18092	0.0467152	0.0271832	0.1676	0.123904
chr1	110345978	110346063	182412	0	+	0.258824	[0,0.28]	chr1	20243	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RBM15	ENSG00000162775.17	ENST00000652747.1:ENST00000618772.4:ENST00000487146.8:ENST00000369784.9:ENST00000650953.2:ENST00000654015.1:ENST00000617047.1	protein_coding	protein_coding	protein_coding	protein_coding	10	124	2	1.42268	1.8710200000000001	2.31936	0.037357	0.00962163	0.155878	0.0823918
chr22	31949423	31949519	7506945	0	+	0.427083	(0.408,0.44]	chr22	766149	16	INTRON	INTRON	YWHAH	ENSG00000128245.15	ENST00000397492.1:ENST00000443669.5:ENST00000248975.6:ENST00000479649.1:ENST00000471374.1:ENST00000420430.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	58	2	1.69566	1.870885	2.04611	0.0453922	0.016628	0.164236	0.102621
chr3	160412852	160412949	1544735	0	+	0.329897	(0.32,0.35]	chr3	160701	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	SMC4	ENSG00000113810.16	ENST00000357388.8:ENST00000469762.5:ENST00000468653.5:ENST00000469858.5:ENST00000489573.5:ENST00000462787.5:ENST00000344722.5:ENST00000497984.5:ENST00000487747.5:ENST00000465563.5:ENST00000494612.1:ENST00000467263.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	122	2	1.50457	1.8708550000000002	2.23714	0.0309203	0.00333584	0.143443	0.0512081
chr13	19717376	19717476	5552284	0	-	0.45	(0.44,0.476]	chr13	530696	74	INTRON	INTRON	PSPC1	ENSG00000121390.19	ENST00000471658.5:ENST00000492741.5:ENST00000635562.1:ENST00000338910.9:ENST00000619300.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	78	2	1.71119	1.870765	2.03034	0.0173569	0.0136438	0.104189	0.101813
chr21	43760126	43760225	7413586	0	+	0.434343	(0.408,0.44]	chr21	755598	42	UTR3	UTR3:EXON_MRNA	PDXK	ENSG00000160209.19	ENST00000468090.5:ENST00000291565.9:ENST00000467908.1	protein_coding	protein_coding	protein_coding	protein_coding	36	319	2	1.68631	1.8705249999999998	2.05474	0.00332118	3.02631e-4	0.0512081	0.0155054
chr22	19120828	19120928	7551999	0	-	0.55	(0.515,0.57]	chr22	771903	310	INTRON	INTRON	DGCR2	ENSG00000070413.20	ENST00000537045.5:ENST00000545799.5:ENST00000263196.12:ENST00000389262.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	33	2	1.7074	1.870505	2.03361	0.0779432	0.0325854	0.196685	0.145164
chr1	20764777	20764876	389634	0	-	0.535354	(0.515,0.57]	chr1	46537	72	INTRON	INTRON	HP1BP3	ENSG00000127483.19	ENST00000438032.6:ENST00000312239.10:ENST00000375003.6:ENST00000419948.5:ENST00000424732.5	protein_coding	protein_coding	protein_coding	protein_coding	4	33	2	1.79136	1.8704049999999999	1.94945	0.0638444	0.0414068	0.177811	0.161557
chr16	70411270	70411370	6511186	0	-	0.55	(0.515,0.57]	chr16	630689	98	INTRON	INTRON	ST3GAL2	ENSG00000157350.13	ENST00000342907.3:ENST00000566097.1:ENST00000561708.1:ENST00000567586.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	33	2	1.79136	1.8704049999999999	1.94945	0.0638444	0.0414068	0.177811	0.161557
chr3	197792938	197793038	1597734	0	+	0.53	(0.515,0.57]	chr3	165560	10	INTRON	INTRON	LRCH3	ENSG00000186001.14	ENST00000443727.1:ENST00000438796.6:ENST00000428136.2:ENST00000425562.7:ENST00000441090.6:ENST00000414675.6:ENST00000334859.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	33	2	1.79136	1.8704049999999999	1.94945	0.0638444	0.0414068	0.177811	0.161557
chr7	74968697	74968797	3336414	0	+	0.56	(0.515,0.57]	chr7	310570	32	INTRON	INTRON	CASTOR2	ENSG00000274070.2	ENST00000616305.2	protein_coding	protein_coding	protein_coding	protein_coding	4	33	2	1.79136	1.8704049999999999	1.94945	0.0638444	0.0414068	0.177811	0.161557
chr4	452216	452316	2092701	0	-	0.44	(0.408,0.44]	chr4	206783	74	INTRON	INTRON	ABCA11P:ZNF721	ENSG00000251595.7:ENSG00000182903.16	ENST00000451020.6:ENST00000514396.5:ENST00000507854.1:ENST00000515578.5:ENST00000506646.5:ENST00000507078.1:ENST00000511833.3:ENST00000338977.5:ENST00000505900.1	protein_coding	protein_coding	protein_coding:transcribed_processed_pseudogene	protein_coding:nonsense_mediated_decay:processed_transcript	6	57	2	1.81759	1.87039	1.92319	0.0316273	0.0247322	0.144405	0.12011
chr1	201851406	201851504	291981	0	+	0.418367	(0.408,0.44]	chr1	33544	7	INTRON	INTRON	IPO9	ENSG00000198700.10	ENST00000464348.5:ENST00000361565.9	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	73	2	1.60905	1.87031	2.13157	0.02971	0.0109031	0.129022	0.0923273
chr11	2967227	2967325	4891738	0	-	0.418367	(0.408,0.44]	chr11	458317	21	INTRON	INTRON	NAP1L4	ENSG00000205531.13	ENST00000620138.4:ENST00000380542.9:ENST00000526115.5:ENST00000492685.5:ENST00000532325.6:ENST00000448187.5:ENST00000399614.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	77	2	1.4727	1.87031	2.26792	0.0217118	0.0179973	0.123836	0.106756
chr16	23990488	23990588	6325307	0	+	0.29	(0.28,0.32]	chr16	605711	15	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000498739.1:ENST00000647422.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	17	197	2	1.40468	1.87026	2.33584	0.0335142	5.14714e-4	0.134145	0.0203753
chr14	23325878	23325977	5657004	0	+	0.525253	(0.515,0.57]	chr14	539475	7	UTR3	UTR3:EXON_MRNA	BCL2L2-PABPN1:PABPN1	ENSG00000258643.6:ENSG00000100836.11	ENST00000678502.1:ENST00000216727.9:ENST00000397276.6	protein_coding	protein_coding	protein_coding	protein_coding	30	220	2	1.42479	1.8702549999999998	2.31572	0.00944001	9.33039e-5	0.0817766	0.00810219
chr10	125053036	125053136	4713259	0	-	0.33	(0.32,0.35]	chr10	434897	135	INTRON	INTRON	CTBP2	ENSG00000175029.17	ENST00000337195.9:ENST00000411419.6:ENST00000494626.6:ENST00000531469.5:ENST00000460976.5:ENST00000476817.1:ENST00000530884.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	72	2	1.43561	1.870185	2.30476	0.0543363	0.0151817	0.164972	0.108535
chr2	144443783	144443883	1241034	0	-	0.28	[0,0.28]	chr2	131703	129	INTRON	INTRON	ZEB2	ENSG00000169554.23	ENST00000636471.1:ENST00000627532.3:ENST00000638128.1:ENST00000637304.1:ENST00000636179.1:ENST00000636820.1:ENST00000637045.1:ENST00000419938.5:ENST00000409487.7:ENST00000440875.6:ENST00000636732.2:ENST00000636026.2:ENST00000675069.1:ENST00000689298.1:ENST00000539609.7:ENST00000558170.6:ENST00000303660.8:ENST00000427902.5:ENST00000637267.2:ENST00000392861.6:ENST00000431672.4:ENST00000409211.5:ENST00000465308.5:ENST00000434448.5:ENST00000472146.5:ENST00000461784.3:ENST00000476394.5:ENST00000637591.2:ENST00000479735.1:ENST00000453352.5:ENST00000435831.5:ENST00000444559.5:ENST00000630572.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	68	2	1.75741	1.8701599999999998	1.98291	0.0494143	0.0424454	0.161763	0.156195
chr20	50582491	50582591	7286644	0	+	0.42	(0.408,0.44]	chr20	741287	4	SS3_PROX	SS3_PROX:INTRON	PTPN1	ENSG00000196396.10	ENST00000541713.5:ENST00000371621.5	protein_coding	protein_coding	protein_coding	protein_coding	6	56	2	1.66104	1.8701150000000002	2.07919	0.0349715	0.0291499	0.14147	0.13747500000000001
chr4	87342503	87342603	2198787	0	-	0.31	(0.28,0.32]	chr4	215746	15	INTRON	INTRON	HSD17B11	ENSG00000198189.11	ENST00000358290.9:ENST00000507518.5:ENST00000512344.5:ENST00000502576.5:ENST00000507286.1:ENST00000513854.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	83	2	1.67134	1.8700899999999998	2.06884	0.0387947	0.0152581	0.143072	0.108569
chr12	111545887	111545987	5412692	0	-	0.47	(0.44,0.476]	chr12	516916	202	INTRON	INTRON	ATXN2	ENSG00000204842.18	ENST00000642389.2:ENST00000608853.5:ENST00000672613.1:ENST00000673436.1:ENST00000643669.2:ENST00000616825.4:ENST00000389153.10:ENST00000550104.5:ENST00000483311.6:ENST00000672335.1:ENST00000492467.6:ENST00000673557.1:ENST00000673283.1:ENST00000673449.1:ENST00000535949.5:ENST00000542287.6:ENST00000644883.1:ENST00000647305.1:ENST00000671792.1:ENST00000392645.6:ENST00000672105.1:ENST00000471866.5:ENST00000549455.1:ENST00000548492.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	64	2	1.5191	1.8700649999999999	2.22103	0.0526241	0.00776319	0.160983	0.0787356
chr6	31541700	31541729	3078846	0	-	0.448276	(0.44,0.476]	chr6	286776	1	UTR5	UTR5:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DDX39B	ENSG00000198563.14	ENST00000458640.5:ENST00000462256.5:ENST00000396172.6:ENST00000482195.5:ENST00000431908.5:ENST00000481456.1:ENST00000428098.5:ENST00000456662.5:ENST00000428450.5:ENST00000449757.5:ENST00000456976.5:ENST00000418897.5:ENST00000419020.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	64	2	1.5191	1.8700649999999999	2.22103	0.0526241	0.00776319	0.160983	0.0787356
chr7	43723734	43723834	3526321	0	-	0.47	(0.44,0.476]	chr7	328785	119	INTRON	INTRON	COA1	ENSG00000106603.20	ENST00000415076.6:ENST00000446330.6:ENST00000446564.5:ENST00000438444.5:ENST00000223336.11:ENST00000310564.10:ENST00000415798.5:ENST00000431651.5:ENST00000451651.5:ENST00000418140.5:ENST00000448704.5:ENST00000470156.1:ENST00000457939.1:ENST00000420441.1:ENST00000478504.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	64	2	1.5191	1.8700649999999999	2.22103	0.0526241	0.00776319	0.160983	0.0787356
chr6	31838396	31838488	2843871	0	+	0.445652	(0.44,0.476]	chr6	267918	6	INTRON	INTRON	SNHG32	ENSG00000204387.14	ENST00000375640.7:ENST00000375641.6:ENST00000375635.6:ENST00000375638.7:ENST00000648677.1:ENST00000375642.6:ENST00000614363.4:ENST00000395789.5:ENST00000375633.5:ENST00000395788.3	lncRNA	lncRNA	lncRNA	lncRNA	9	83	2	1.75865	1.870055	1.98146	0.0186013	0.0130473	0.117264	0.093385
chr1	162576276	162576376	238466	0	+	0.32	(0.28,0.32]	chr1	28705	1	SS3_PROX	SS3_PROX:INTRON	UAP1	ENSG00000117143.14	ENST00000367925.6:ENST00000367926.9	protein_coding	protein_coding	protein_coding	protein_coding	5	60	2	1.60343	1.86997	2.13651	0.0669889	0.0265696	0.183051	0.134088
chr6	7110200	7110299	2798387	0	+	0.353535	(0.35,0.378]	chr6	263723	11	INTRON	INTRON	RREB1	ENSG00000124782.21	ENST00000379933.7:ENST00000491191.5:ENST00000471433.5:ENST00000379938.7:ENST00000467782.5:ENST00000349384.10:ENST00000334984.10:ENST00000475946.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	62	2	1.82281	1.869935	1.91706	0.0316938	0.026412	0.144635	0.122506
chr1	41171978	41172078	430123	0	-	0.5	(0.476,0.515]	chr1	52248	91	INTRON	INTRON	SCMH1	ENSG00000010803.17	ENST00000695335.1:ENST00000372596.5:ENST00000372597.5:ENST00000337495.9:ENST00000695336.1	protein_coding	protein_coding	protein_coding	protein_coding	8	73	2	1.63187	1.8699249999999998	2.10798	0.037661	0.00628634	0.14058	0.0722266
chr4	55419356	55419454	1960833	0	+	0.5	(0.476,0.515]	chr4	196577	8	INTRON	INTRON	TMEM165	ENSG00000134851.13	ENST00000381334.10:ENST00000506198.5:ENST00000508404.5:ENST00000514904.5:ENST00000508561.5:ENST00000608091.1:ENST00000509575.1:ENST00000506103.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	73	2	1.63187	1.8699249999999998	2.10798	0.037661	0.00628634	0.14058	0.0722266
chr21	22285105	22285205	7385219	0	+	0.37	(0.35,0.378]	chr21	752727	719	INTRON	INTRON	ENSG00000226043	ENSG00000226043.2	ENST00000667099.1:ENST00000654607.1:ENST00000444130.1	lncRNA	lncRNA	lncRNA	lncRNA	6	60	2	1.56881	1.8698000000000001	2.17079	0.047622	0.0225978	0.153019	0.124921
chr20	63904775	63904875	7301055	0	+	0.46	(0.44,0.476]	chr20	743135	91	INTRON	INTRON	DNAJC5	ENSG00000101152.11	ENST00000360864.9:ENST00000470551.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	53	2	1.60176	1.869775	2.13779	0.0389597	0.0264596	0.160861	0.122506
chr6	125021258	125021358	2952068	0	+	0.47	(0.44,0.476]	chr6	277700	116	INTRON	INTRON	RNF217	ENSG00000146373.17	ENST00000521654.7:ENST00000560949.5:ENST00000519565.5:ENST00000454842.2:ENST00000368414.6:ENST00000359704.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	53	2	1.60176	1.869775	2.13779	0.0389597	0.0264596	0.160861	0.122506
chr7	157215176	157215275	3454718	0	+	0.464646	(0.44,0.476]	chr7	322975	69	INTRON	INTRON	UBE3C	ENSG00000009335.18	ENST00000348165.10:ENST00000469336.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	53	2	1.60176	1.869775	2.13779	0.0389597	0.0264596	0.160861	0.122506
chr11	93739930	93740029	5017320	0	-	0.282828	(0.28,0.32]	chr11	473308	2	INTRON	INTRON	TAF1D	ENSG00000166012.17	ENST00000323981.6:ENST00000526015.5:ENST00000527169.5:ENST00000448108.7:ENST00000534770.1:ENST00000532235.1:ENST00000532455.1:ENST00000529508.1:ENST00000527690.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	92	2	1.45235	1.869745	2.28714	0.0543728	0.00696126	0.164972	0.0754576
chr8	41617695	41617792	3742635	0	+	0.474227	(0.44,0.476]	chr8	347975	23	INTRON	INTRON	GPAT4	ENSG00000158669.11	ENST00000396987.7:ENST00000523906.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	53	2	1.54868	1.8697300000000001	2.19078	0.0457575	0.0226089	0.164677	0.117489
chr6	15261255	15261355	2823098	0	+	0.37	(0.35,0.378]	chr6	265190	119	INTRON	INTRON	JARID2	ENSG00000008083.14	ENST00000341776.7:ENST00000397311.4	protein_coding	protein_coding	protein_coding	protein_coding	10	98	2	1.28976	1.869685	2.44961	0.0648731	0.0014359	0.179414	0.0347139
chr5	138568289	138568356	2732835	0	-	0.462687	(0.44,0.476]	chr5	257473	2	INTRON	INTRON	HSPA9	ENSG00000113013.16	ENST00000677693.1:ENST00000677064.1:ENST00000678300.1:ENST00000677425.1:ENST00000649578.2:ENST00000677988.1:ENST00000297185.9:ENST00000677527.1:ENST00000678794.1:ENST00000677553.1:ENST00000678384.1:ENST00000678051.1:ENST00000677066.1:ENST00000649692.2:ENST00000678551.1:ENST00000524109.2:ENST00000507115.6:ENST00000507097.5:ENST00000504902.6:ENST00000508003.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	89	2	1.38315	1.869455	2.35576	0.0472692	0.00208591	0.152795	0.0424672
chr1	32666327	32666427	65983	0	+	0.38	(0.378,0.408]	chr1	8429	36	INTRON	INTRON	RBBP4	ENSG00000162521.19	ENST00000414241.7:ENST00000527118.5:ENST00000373493.10:ENST00000401893.7:ENST00000524393.5:ENST00000492348.6:ENST00000526193.5:ENST00000373485.5:ENST00000477563.6:ENST00000458695.6:ENST00000445722.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	85	2	1.48285	1.869425	2.256	0.044825	0.00336115	0.149888	0.0532154
chr16	23864824	23864924	6324047	0	+	0.53	(0.515,0.57]	chr16	605693	271	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000498058.1:ENST00000645517.1:ENST00000498739.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	82	2	1.22131	1.86928	2.51725	0.0614604	8.36453e-4	0.173483	0.0263691
chr19	1588332	1588430	7112480	0	-	0.510204	(0.476,0.515]	chr19	714541	21	INTRON	INTRON	MBD3:ENSG00000267059	ENSG00000071655.18:ENSG00000267059.2	ENST00000434436.8:ENST00000156825.5:ENST00000585937.1:ENST00000585967.5:ENST00000592965.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	76	2	1.58842	1.8691550000000001	2.14989	0.0406588	0.00611105	0.161534	0.0676501
chr1	183488661	183488760	273669	0	+	0.383838	(0.378,0.408]	chr1	32019	144	INTRON	INTRON	SMG7	ENSG00000116698.22	ENST00000440812.7:ENST00000367537.7:ENST00000688051.1:ENST00000685780.1:ENST00000508461.5:ENST00000347615.6:ENST00000419169.5:ENST00000444547.6:ENST00000507469.5:ENST00000515829.6:ENST00000367538.1:ENST00000502375.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	42	2	1.51223	1.869065	2.2259	0.0662381	0.051139	0.181924	0.176696
chr3	47162627	47162727	1681591	0	-	0.4	(0.378,0.408]	chr3	171624	356	INTRON	INTRON	SETD2	ENSG00000181555.22	ENST00000691544.1:ENST00000638947.2:ENST00000409792.4:ENST00000412450.1	protein_coding	protein_coding	protein_coding	protein_coding	20	164	2	1.02771	1.8690449999999998	2.71038	0.0561474	2.84674e-4	0.18407	0.015495
chr12	111589456	111589556	5413134	0	-	0.44	(0.408,0.44]	chr12	516941	247	INTRON	INTRON	ATXN2	ENSG00000204842.18	ENST00000642389.2:ENST00000608853.5:ENST00000672613.1:ENST00000673436.1:ENST00000643669.2:ENST00000616825.4:ENST00000389153.10:ENST00000550104.5:ENST00000483311.6:ENST00000672335.1:ENST00000673557.1:ENST00000673283.1:ENST00000673449.1:ENST00000535949.5:ENST00000542287.6:ENST00000644883.1:ENST00000647305.1:ENST00000671792.1:ENST00000392645.6:ENST00000672105.1:ENST00000549455.1:ENST00000548492.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	82	2	1.85866	1.8689900000000002	1.87932	0.0172104	0.0106944	0.104099	0.091856
chr22	49594550	49594650	7602025	0	-	0.41	(0.408,0.44]	chr22	778566	1530	INTRON	INTRON	MIR3667HG	ENSG00000188511.13	ENST00000414287.5:ENST00000416411.1	lncRNA	lncRNA	lncRNA	lncRNA	8	72	2	1.54273	1.868985	2.19524	0.0337312	0.00990486	0.146709	0.0838372
chr7	23395572	23395672	3502912	0	-	0.46	(0.44,0.476]	chr7	326881	10	INTRON	INTRON	IGF2BP3	ENSG00000136231.14	ENST00000258729.8:ENST00000421467.6:ENST00000468263.5:ENST00000479504.5:ENST00000466809.6:ENST00000491719.5:ENST00000465058.5:ENST00000469723.5:ENST00000474105.5:ENST00000476938.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	71	2	1.70763	1.868985	2.03034	0.0190437	0.0173569	0.118994	0.104189
chr17	31938020	31938118	6595685	0	+	0.459184	(0.44,0.476]	chr17	641540	1	INTRON	INTRON	SUZ12	ENSG00000178691.11	ENST00000322652.10:ENST00000580398.1	protein_coding	protein_coding	protein_coding	protein_coding	8	71	2	1.66775	1.8689550000000001	2.07016	0.0219883	0.0151815	0.123836	0.0994339
chr22	20940330	20940430	7480747	0	+	0.35	(0.32,0.35]	chr22	763096	57	INTRON	INTRON	CRKL	ENSG00000099942.13	ENST00000354336.8:ENST00000411769.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	96	2	1.46679	1.86888	2.27097	0.0497695	0.00347642	0.156383	0.0540643
chr6	149762106	149762205	2996158	0	+	0.363636	(0.35,0.378]	chr6	280342	115	INTRON	INTRON	PCMT1	ENSG00000120265.19	ENST00000367384.7:ENST00000367378.6:ENST00000484601.6:ENST00000367380.9:ENST00000544496.5:ENST00000649295.1:ENST00000494411.6:ENST00000460828.6:ENST00000464889.7:ENST00000486585.2:ENST00000495487.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	82	2	1.56287	1.868865	2.17486	0.0697648	0.00289708	0.184298	0.0494641
chr7	75367247	75367347	3337741	0	+	0.44	(0.408,0.44]	chr7	310751	6	EXON_LNCRNA	EXON_LNCRNA:INTRON	STAG3L1	ENSG00000205583.14	ENST00000619870.4:ENST00000687422.1:ENST00000404291.3	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	10	92	2	1.85866	1.8688500000000001	1.87904	0.011526	0.0106944	0.091856	0.0889104
chr1	16637367	16637467	383754	0	-	0.51	(0.476,0.515]	chr1	45226	18	INTRON	INTRON	CROCCP2	ENSG00000215908.10	ENST00000639456.1:ENST00000412962.4:ENST00000635081.1:ENST00000362058.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	8	71	2	1.28655	1.86881	2.45107	0.075974	0.00301722	0.194842	0.0507519
chr20	35722874	35722974	7336352	0	-	0.48	(0.476,0.515]	chr20	747452	6	INTRON	INTRON	RBM39	ENSG00000131051.24	ENST00000253363.11:ENST00000639702.1:ENST00000656873.1:ENST00000463004.5:ENST00000361162.10:ENST00000461283.5:ENST00000403542.6:ENST00000338163.10:ENST00000528062.7:ENST00000429968.5:ENST00000444878.5:ENST00000665058.1:ENST00000492779.5:ENST00000448303.5:ENST00000490484.7:ENST00000494274.5:ENST00000374038.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	16	138	2	1.78301	1.8686150000000001	1.95422	0.00584847	0.00391871	0.0667594	0.0570863
chr6	37822015	37822115	2857055	0	+	0.53	(0.515,0.57]	chr6	270225	16	INTRON	INTRON	ZFAND3	ENSG00000156639.12	ENST00000287218.9:ENST00000373391.6:ENST00000474522.5	protein_coding	protein_coding	protein_coding	protein_coding	6	48	2	1.56681	1.8685999999999998	2.17039	0.064862	0.00900252	0.179394	0.0851009
chr19	5668291	5668384	7005774	0	+	0.365591	(0.35,0.378]	chr19	695043	1	UTR3	UTR3:EXON_MRNA	SAFB	ENSG00000160633.13	ENST00000589863.5:ENST00000588852.2:ENST00000292123.9:ENST00000592224.5:ENST00000454510.5:ENST00000591991.1:ENST00000592555.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	107	2	1.78162	1.8685800000000001	1.95554	0.0251606	0.00372132	0.12011	0.0561984
chr2	113592583	113592683	854165	0	+	0.51	(0.476,0.515]	chr2	95858	35	INTRON	INTRON	WASH2P	ENSG00000146556.15	ENST00000686495.1:ENST00000692602.1:ENST00000688542.1:ENST00000685302.1:ENST00000685435.1:ENST00000685518.1:ENST00000691953.1:ENST00000453662.6	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	7	64	2	1.7425	1.868535	1.99457	0.0417334	0.009924	0.147007	0.0877296
chr6	147722643	147722743	2991223	0	+	0.34	(0.32,0.35]	chr6	280167	298	INTRON	INTRON	ENSG00000227681	ENSG00000227681.5	ENST00000427015.1:ENST00000432506.5:ENST00000442094.5:ENST00000434985.1	lncRNA	lncRNA	lncRNA	lncRNA	8	84	2	1.43561	1.868355	2.3011	0.0543363	0.00617969	0.164972	0.0713552
chr7	12349698	12349796	3484868	0	-	0.265306	[0,0.28]	chr7	325854	34	INTRON	INTRON	VWDE	ENSG00000146530.15	ENST00000275358.8:ENST00000452576.6:ENST00000521169.5:ENST00000649524.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	68	2	1.71402	1.868335	2.02265	0.047753	0.0449017	0.170327	0.149888
chr11	66648938	66649037	4811137	0	+	0.282828	(0.28,0.32]	chr11	447908	26	INTRON	INTRON	RBM4	ENSG00000173933.21	ENST00000396053.9:ENST00000578778.5:ENST00000506523.6	protein_coding	protein_coding	protein_coding	protein_coding	9	100	2	1.47751	1.86816	2.25881	0.0351404	0.009974	0.149985	0.0842795
chr5	146113810	146113908	2746682	0	-	0.306122	(0.28,0.32]	chr5	258732	34	UTR3	UTR3:EXON_MRNA	LARS1	ENSG00000133706.19	ENST00000674174.1:ENST00000674170.1:ENST00000674479.1:ENST00000674309.1:ENST00000674218.1:ENST00000674467.1:ENST00000674290.1:ENST00000674447.1:ENST00000674270.1:ENST00000674383.1:ENST00000674191.1:ENST00000674158.1:ENST00000506231.6:ENST00000674471.1:ENST00000674181.1:ENST00000394434.7:ENST00000674398.1:ENST00000674277.1:ENST00000274562.13	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	83	2	1.64432	1.86815	2.09198	0.0606133	0.00780964	0.171142	0.0788246
chr2	39100544	39100643	1102133	0	-	0.363636	(0.35,0.378]	chr2	118304	22	INTRON	INTRON	SOS1	ENSG00000115904.15	ENST00000692089.1:ENST00000402219.8:ENST00000690876.1:ENST00000395038.6:ENST00000691229.1:ENST00000689668.1:ENST00000690679.1:ENST00000461545.2:ENST00000451331.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	58	2	1.64283	1.86807	2.09331	0.034896	0.0315717	0.148998	0.13151
chr18	9945358	9945458	6873664	0	+	0.47	(0.44,0.476]	chr18	680897	3	SS5_PROX	SS5_PROX:INTRON	VAPA	ENSG00000101558.14	ENST00000400000.7:ENST00000340541.4:ENST00000584796.5:ENST00000583879.5:ENST00000583475.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	17	151	2	1.71781	1.867985	2.01816	0.00956926	0.00144784	0.0820838	0.0349151
chr2	108558833	108558933	846090	0	+	0.51	(0.476,0.515]	chr2	94661	239	INTRON	INTRON	LIMS1	ENSG00000169756.17	ENST00000695516.1:ENST00000544547.6:ENST00000695517.1	protein_coding	protein_coding	protein_coding	protein_coding	5	47	2	1.7425	1.8679549999999998	1.99341	0.0417334	0.037389	0.155878	0.147007
chr5	131569830	131569930	2718516	0	-	0.5	(0.476,0.515]	chr5	255608	74	INTRON	INTRON	RAPGEF6	ENSG00000158987.22	ENST00000509018.6:ENST00000507093.5:ENST00000296859.10:ENST00000627212.2:ENST00000308008.10:ENST00000515170.5:ENST00000510071.5:ENST00000503398.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	47	2	1.7425	1.8679549999999998	1.99341	0.0417334	0.037389	0.155878	0.147007
chr7	45106564	45106664	3528906	0	-	0.49	(0.476,0.515]	chr7	329180	9	EXON_MRNA	EXON_MRNA:INTRON	TBRG4	ENSG00000136270.14	ENST00000395655.8:ENST00000361278.7:ENST00000258770.8:ENST00000494076.5:ENST00000495973.5:ENST00000478532.5:ENST00000461363.1:ENST00000477328.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	47	2	1.7425	1.8679549999999998	1.99341	0.0417334	0.037389	0.155878	0.147007
chrX	71411736	71411836	7678701	0	+	0.44	(0.408,0.44]	chrX	786269	32	INTRON	INTRON	TAF1	ENSG00000147133.17	ENST00000683202.1:ENST00000373790.9:ENST00000423759.6:ENST00000683782.1:ENST00000683668.1:ENST00000276072.9:ENST00000463163.5:ENST00000373775.8:ENST00000485087.6:ENST00000437147.8:ENST00000683358.1:ENST00000682124.1:ENST00000461764.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	28	243	2	1.79489	1.86795	1.94101	0.00209389	0.00142515	0.041307	0.0347139
chrX	13319298	13319395	7622249	0	+	0.309278	(0.28,0.32]	chrX	780298	4	EXON_LNCRNA	EXON_LNCRNA	GS1-600G8.3	ENSG00000231216.1	ENST00000431486.1	lncRNA	lncRNA	lncRNA	lncRNA	18	213	2	1.27	1.86784	2.46568	0.035139	7.08877e-4	0.149985	0.0243541
chr2	170934029	170934129	916439	0	+	0.36	(0.35,0.378]	chr2	100864	37	INTRON	INTRON	GORASP2	ENSG00000115806.13	ENST00000471559.5:ENST00000444801.5:ENST00000234160.5:ENST00000493692.5:ENST00000497674.5:ENST00000455067.5:ENST00000454751.5:ENST00000442798.5:ENST00000497928.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	85	2	1.6344	1.8677450000000002	2.10109	0.0189573	0.014685	0.118501	0.0983813
chr17	59904992	59905092	6643881	0	+	0.43	(0.408,0.44]	chr17	648798	107	INTRON	INTRON	RPS6KB1	ENSG00000108443.14	ENST00000393021.7:ENST00000472940.5:ENST00000225577.9:ENST00000477179.5:ENST00000443572.6:ENST00000489824.1:ENST00000406116.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	82	2	1.82275	1.86772	1.91269	0.0153219	0.0123226	0.100173	0.097243
chr7	107460224	107460324	3611987	0	-	0.48	(0.476,0.515]	chr7	336694	472	INTRON	INTRON	COG5	ENSG00000164597.15	ENST00000297135.9:ENST00000347053.8:ENST00000393603.7:ENST00000484237.5:ENST00000475638.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	46	2	1.74317	1.8675700000000002	1.99197	0.0396373	0.039572	0.161534	0.143072
chr2	38318228	38318325	1098746	0	-	0.57732000000000006	(0.57,1]	chr2	117844	3	SS5_PROX	SS5_PROX:INTRON	ATL2	ENSG00000119787.14	ENST00000378954.9:ENST00000406122.5:ENST00000405384.6:ENST00000402054.5:ENST00000419554.6:ENST00000651368.1:ENST00000452935.6:ENST00000629272.2:ENST00000449130.5:ENST00000443098.5:ENST00000456736.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	31	2	1.3512	1.867555	2.38391	0.0618425	0.0104374	0.174429	0.0902296
chr6	47584364	47584464	2874645	0	+	0.3	(0.28,0.32]	chr6	272786	19	INTRON	INTRON	CD2AP	ENSG00000198087.7	ENST00000359314.5	protein_coding	protein_coding	protein_coding	protein_coding	6	69	2	1.86684	1.867545	1.86825	0.0605813	0.017708	0.171122	0.11319
chr20	38076906	38077006	7269317	0	+	0.42	(0.408,0.44]	chr20	738717	64	INTRON	INTRON	RPRD1B	ENSG00000101413.12	ENST00000462548.6:ENST00000373433.9:ENST00000449186.2:ENST00000618318.1:ENST00000614670.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	83	2	1.76523	1.86748	1.96973	0.0174785	0.0108773	0.10482	0.0923273
chr10	94564559	94564657	4499809	0	+	0.408163	(0.378,0.408]	chr10	414246	13	INTRON	INTRON	HELLS	ENSG00000119969.15	ENST00000239026.10:ENST00000371332.8:ENST00000348459.10:ENST00000419900.5:ENST00000394036.5:ENST00000394045.5:ENST00000462057.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	95	2	1.72469	1.867445	2.0102	0.0155	0.00940766	0.100909	0.0861183
chr13	19727345	19727445	5552384	0	-	0.32	(0.28,0.32]	chr13	530696	174	INTRON	INTRON	PSPC1	ENSG00000121390.19	ENST00000471658.5:ENST00000492741.5:ENST00000635562.1:ENST00000338910.9:ENST00000619300.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	13	148	2	1.7812	1.867445	1.95369	0.0202528	0.00343573	0.110042	0.0539802
chr17	70100175	70100275	6828450	0	-	0.28	[0,0.28]	chr17	675009	270	INTRON	INTRON	ENSG00000230258	ENSG00000230258.6	ENST00000435112.5	lncRNA	lncRNA	lncRNA	lncRNA	8	105	2	1.78874	1.86744	1.94614	0.0298508	0.0175354	0.129138	0.11319
chr18	2709909	2710009	6865428	0	+	0.33	(0.32,0.35]	chr18	680035	16	INTRON	INTRON	SMCHD1	ENSG00000101596.17	ENST00000320876.11:ENST00000688342.1:ENST00000693213.1:ENST00000577880.5:ENST00000584897.5:ENST00000581711.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	109	2	1.75437	1.86742	1.98047	0.017109	0.00919797	0.110916	0.0815812
chr22	21852327	21852427	7561233	0	-	0.46	(0.44,0.476]	chr22	773388	441	INTRON	INTRON	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	7	64	2	1.60467	1.867295	2.12992	0.0411383	0.010975	0.1451	0.092635
chr9	131183478	131183577	4216224	0	+	0.353535	(0.35,0.378]	chr9	386630	47	INTRON	INTRON	NUP214	ENSG00000126883.19	ENST00000695497.1:ENST00000695498.1:ENST00000695496.1:ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000525980.5:ENST00000526346.5:ENST00000531929.5:ENST00000651334.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	78	2	1.81752	1.8672900000000001	1.91706	0.026412	0.0130467	0.122506	0.0994973
chr21	43791432	43791532	7413632	0	+	0.52	(0.515,0.57]	chr21	755613	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	RRP1	ENSG00000160214.13	ENST00000475534.5:ENST00000483896.5:ENST00000497547.2:ENST00000492638.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	71	2	1.78456	1.8670049999999998	1.94945	0.0414068	0.00780454	0.161557	0.0759016
chr16	2256116	2256214	6431571	0	-	0.336735	(0.32,0.35]	chr16	618786	5	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	RNPS1	ENSG00000205937.12	ENST00000397086.6:ENST00000566458.5:ENST00000320225.10:ENST00000562205.1:ENST00000566397.5:ENST00000565678.5:ENST00000561718.5:ENST00000568631.5:ENST00000569598.6:ENST00000301730.12:ENST00000567147.5:ENST00000565243.2:ENST00000565870.5:ENST00000561518.5:ENST00000564311.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	15	143	2	1.08629	1.8669	2.64751	0.0623742	9.50582e-4	0.195118	0.0282103
chr1	38003083	38003181	426616	0	-	0.438776	(0.408,0.44]	chr1	51777	33	INTRON	INTRON	FHL3	ENSG00000183386.10	ENST00000373016.4:ENST00000485803.5:ENST00000475084.5:ENST00000477194.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	39	2	1.85305	1.866835	1.88062	0.0543543	0.0534548	0.182243	0.162935
chr3	47502624	47502724	1682947	0	-	0.44	(0.408,0.44]	chr3	171914	1	SS5_PROX	SS5_PROX:INTRON	ELP6	ENSG00000163832.16	ENST00000296149.9:ENST00000442215.6:ENST00000446787.5:ENST00000439305.5:ENST00000412761.5:ENST00000444760.5:ENST00000445044.5:ENST00000461208.5:ENST00000425291.5:ENST00000494161.1:ENST00000449409.5:ENST00000414236.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	39	2	1.85305	1.866835	1.88062	0.0543543	0.0534548	0.182243	0.162935
chr20	5197191	5197290	7228877	0	+	0.373737	(0.35,0.378]	chr20	734675	71	UTR3	UTR3:EXON_MRNA	CDS2	ENSG00000101290.14	ENST00000460006.6	protein_coding	protein_coding	protein_coding	protein_coding	5	51	2	1.56287	1.8668300000000002	2.17079	0.0697648	0.0225978	0.184298	0.124921
chr12	57382456	57382556	5338772	0	-	0.48	(0.476,0.515]	chr12	510710	411	INTRON	INTRON	R3HDM2	ENSG00000179912.21	ENST00000402412.6:ENST00000347140.7:ENST00000634871.1:ENST00000448732.1	protein_coding	protein_coding	protein_coding	protein_coding	11	102	2	1.48441	1.866805	2.2492	0.0315624	0.00238578	0.144381	0.0439909
chr1	207776943	207777043	305160	0	+	0.22	[0,0.28]	chr1	35129	8	INTRON	INTRON	CD46	ENSG00000117335.21	ENST00000695779.1:ENST00000695777.1:ENST00000695778.1:ENST00000496723.2:ENST00000695782.1:ENST00000695781.1:ENST00000695780.1:ENST00000636114.2:ENST00000367042.6:ENST00000322875.8:ENST00000322918.9:ENST00000354848.5:ENST00000357714.5:ENST00000358170.6:ENST00000367041.5:ENST00000367047.5:ENST00000695783.1:ENST00000695784.1:ENST00000469535.5:ENST00000360212.6:ENST00000480003.5:ENST00000695786.1:ENST00000490278.2:ENST00000488596.5:ENST00000471987.1:ENST00000462968.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	78	2	1.71089	1.86677	2.02265	0.0449017	0.0318277	0.149888	0.14477
chr8	124999203	124999303	3853229	0	+	0.42	(0.408,0.44]	chr8	355125	7	UTR5	UTR5:EXON_MRNA:INTRON	SQLE	ENSG00000104549.12	ENST00000523430.5:ENST00000265896.10:ENST00000521232.1	protein_coding	protein_coding	protein_coding	protein_coding	16	137	2	1.82727	1.866705	1.90614	0.0103993	0.00259418	0.0854042	0.0470631
chr9	137282144	137282243	4223346	0	+	0.373737	(0.35,0.378]	chr9	388111	23	UTR3	UTR3:EXON_MRNA	TOR4A	ENSG00000198113.3	ENST00000357503.3	protein_coding	protein_coding	protein_coding	protein_coding	13	126	2	1.55842	1.8666399999999999	2.17486	0.0195852	0.00289708	0.109486	0.0494641
chr22	19875906	19876006	7555636	0	-	0.48	(0.476,0.515]	chr22	772457	2	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	TXNRD2	ENSG00000184470.21	ENST00000400518.5:ENST00000542719.6:ENST00000494454.5:ENST00000474308.5:ENST00000400525.6:ENST00000400521.7:ENST00000400519.6:ENST00000634537.1:ENST00000487165.5:ENST00000462330.5:ENST00000495655.2:ENST00000485358.5:ENST00000462843.2:ENST00000634471.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:non_stop_decay:nonsense_mediated_decay	9	69	2	1.23367	1.86654	2.49941	0.0587374	0.00811651	0.189982	0.0766625
chr12	116063982	116064082	5423406	0	-	0.44	(0.408,0.44]	chr12	518245	410	INTRON	INTRON	MED13L	ENSG00000123066.9	ENST00000281928.9:ENST00000650226.1:ENST00000648737.1:ENST00000548743.2:ENST00000647567.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	49	2	1.85305	1.8664100000000001	1.87977	0.0543543	0.0282738	0.182243	0.125825
chr8	129527468	129527568	4060557	0	-	0.37	(0.35,0.378]	chr8	369648	169	INTRON	INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1:ENST00000676273.1:ENST00000667643.1:ENST00000668791.1:ENST00000663716.1:ENST00000663572.1:ENST00000676148.1:ENST00000667962.1:ENST00000674877.1:ENST00000675316.1:ENST00000674656.1:ENST00000446592.7:ENST00000667341.1:ENST00000675186.1:ENST00000652971.1:ENST00000661447.1:ENST00000674863.1:ENST00000675498.1:ENST00000675527.1:ENST00000676108.1:ENST00000657647.1:ENST00000675589.1:ENST00000675913.1:ENST00000675109.1:ENST00000671632.1:ENST00000671311.1:ENST00000676099.1:ENST00000660652.1:ENST00000675522.1:ENST00000675183.1:ENST00000658861.1:ENST00000663991.1:ENST00000675044.1:ENST00000675435.1:ENST00000674639.1:ENST00000676069.1:ENST00000675532.1:ENST00000674762.1:ENST00000523151.6:ENST00000675948.1:ENST00000665364.1:ENST00000657251.1:ENST00000675166.1:ENST00000674883.1:ENST00000675867.1:ENST00000674580.1:ENST00000675393.1:ENST00000520048.1:ENST00000674906.1:ENST00000676030.1:ENST00000670588.1:ENST00000675072.1:ENST00000664936.1:ENST00000652914.1:ENST00000657069.1	lncRNA	lncRNA	lncRNA	lncRNA	9	86	2	1.34988	1.866305	2.38273	0.0498069	0.00534773	0.17488	0.0642565
chr8	38295098	38295196	3936533	0	-	0.367347	(0.35,0.378]	chr8	360735	41	INTRON	INTRON	NSD3	ENSG00000147548.17	ENST00000317025.13:ENST00000433384.6:ENST00000527502.5	protein_coding	protein_coding	protein_coding	protein_coding	6	60	2	1.75561	1.8662899999999998	1.97697	0.0739399	0.0109711	0.190914	0.092635
chr7	139387327	139387426	3437870	0	+	0.525253	(0.515,0.57]	chr7	320340	108	INTRON	INTRON	LUC7L2:FMC1-LUC7L2	ENSG00000146963.18:ENSG00000269955.2	ENST00000541170.7:ENST00000541515.3:ENST00000608368.5:ENST00000619796.4:ENST00000354926.9:ENST00000456182.5:ENST00000263545.7:ENST00000463912.5:ENST00000498518.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	62	2	1.75372	1.86624	1.97876	0.0386904	0.00610685	0.14279	0.0706941
chrX	9524896	9524996	7619253	0	+	0.48	(0.476,0.515]	chrX	779944	227	INTRON	INTRON	TBL1X	ENSG00000101849.18	ENST00000407597.7:ENST00000380961.5:ENST00000424279.6:ENST00000645353.2:ENST00000422314.5	protein_coding	protein_coding	protein_coding	protein_coding	5	46	2	1.68092	1.86623	2.05154	0.0474026	0.0336015	0.169265	0.134145
chr6	20407930	20408030	2827508	0	+	0.35	(0.32,0.35]	chr6	265575	37	INTRON	INTRON	E2F3	ENSG00000112242.16	ENST00000346618.8:ENST00000535432.2	protein_coding	protein_coding	protein_coding	protein_coding	11	105	2	1.29183	1.8662	2.44057	0.0438084	0.00466047	0.162255	0.0600108
chr9	131202117	131202217	4216423	0	+	0.46	(0.44,0.476]	chr9	386672	4	SS5_PROX	SS5_PROX:INTRON	NUP214	ENSG00000126883.19	ENST00000695497.1:ENST00000695498.1:ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000524578.6:ENST00000453861.6:ENST00000483497.6:ENST00000695500.1:ENST00000650694.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	19	168	2	1.75637	1.86613	1.97589	0.00673049	0.00144004	0.0709441	0.0347852
chr20	49634825	49634924	7352825	0	-	0.454545	(0.44,0.476]	chr20	749799	20	UTR3	UTR3:EXON_MRNA	B4GALT5	ENSG00000158470.5	ENST00000371711.4	protein_coding	protein_coding	protein_coding	protein_coding	16	153	2	1.62573	1.8661299999999998	2.10653	0.0146931	0.00130101	0.106558	0.0331067
chr11	65438749	65438849	4805930	0	+	0.34	(0.32,0.35]	chr11	446554	161	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	80	827	2	1.6316	1.8660700000000001	2.10054	0.00352967	8.53723e-5	0.0527996	0.00782
chr15	92935036	92935135	6104045	0	+	0.515152	(0.476,0.515]	chr15	581428	56	INTRON	INTRON	ENSG00000279765:CHD2	ENSG00000279765.3:ENSG00000173575.22	ENST00000630790.1:ENST00000626874.2:ENST00000394196.9:ENST00000635856.1:ENST00000420239.7:ENST00000628375.2:ENST00000625990.3:ENST00000626782.2:ENST00000629136.1:ENST00000637572.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	9	80	2	1.79187	1.86604	1.94021	0.0362169	0.00523626	0.138959	0.0656295
chr20	6028171	6028270	7230773	0	+	0.353535	(0.35,0.378]	chr20	734853	1	SS3_PROX	SS3_PROX:INTRON	CRLS1	ENSG00000088766.12	ENST00000452938.5:ENST00000378863.9:ENST00000378868.4:ENST00000489345.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	51	2	1.75561	1.866035	1.97646	0.0739399	0.0193942	0.190914	0.119831
chr5	138436648	138436743	2495724	0	+	0.378947	(0.378,0.408]	chr5	238610	11	UTR3	UTR3:EXON_MRNA	KDM3B	ENSG00000120733.14	ENST00000314358.10:ENST00000510866.5:ENST00000542866.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	76	2	1.36527	1.866	2.36673	0.0587392	0.00539899	0.189982	0.064414
chr11	110288989	110289088	5041261	0	-	0.525253	(0.515,0.57]	chr11	474757	7	INTRON	INTRON	RDX	ENSG00000137710.17	ENST00000645527.1:ENST00000530749.5:ENST00000528498.5:ENST00000528900.5:ENST00000530301.5:ENST00000647231.1:ENST00000646663.1:ENST00000645495.2:ENST00000544551.5:ENST00000530131.5:ENST00000534683.1:ENST00000528556.5:ENST00000533991.1:ENST00000533678.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	30	2	1.60221	1.86596	2.12971	0.0757903	0.0581855	0.194427	0.188704
chr12	124780783	124780883	5445734	0	-	0.62	(0.57,1]	chr12	521214	18	INTRON	INTRON	SCARB1	ENSG00000073060.17	ENST00000339570.9:ENST00000261693.11:ENST00000679605.1:ENST00000681686.1:ENST00000680926.1:ENST00000680556.1:ENST00000680982.1:ENST00000680596.1:ENST00000681555.1:ENST00000681788.1:ENST00000415380.6:ENST00000681117.1:ENST00000681499.1:ENST00000545305.1:ENST00000538291.5:ENST00000546215.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	33	143	2	1.78752	1.8659	1.94428	7.4267e-4	5.36338e-4	0.0250442	0.020931
chr15	44507351	44507450	6015158	0	+	0.393939	(0.378,0.408]	chr15	572973	36	INTRON	INTRON	CTDSPL2	ENSG00000137770.14	ENST00000260327.9:ENST00000558966.5:ENST00000558373.5:ENST00000560620.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	40	2	1.76032	1.865875	1.97143	0.0721577	0.0398704	0.187433	0.161534
chr18	36140461	36140548	6891531	0	+	0.402299	(0.378,0.408]	chr18	682987	5	INTRON	INTRON	ELP2	ENSG00000134759.14	ENST00000543127.5:ENST00000544267.5:ENST00000351393.10:ENST00000545632.5:ENST00000442325.6:ENST00000358232.11:ENST00000423854.6:ENST00000539560.5:ENST00000542430.5:ENST00000350494.10:ENST00000542824.5:ENST00000540799.1:ENST00000543439.5:ENST00000540730.5:ENST00000540323.5:ENST00000536373.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	40	2	1.76032	1.865875	1.97143	0.0721577	0.0398704	0.187433	0.161534
chr3	138807646	138807746	1831229	0	-	0.4	(0.378,0.408]	chr3	184062	107	INTRON	INTRON	PIK3CB	ENSG00000051382.9	ENST00000674063.1:ENST00000477593.5:ENST00000462898.5:ENST00000483968.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	40	2	1.76032	1.865875	1.97143	0.0721577	0.0398704	0.187433	0.161534
chr8	132782707	132782807	3865242	0	+	0.4	(0.378,0.408]	chr8	355809	44	INTRON	INTRON	PHF20L1	ENSG00000129292.21	ENST00000622263.4:ENST00000220847.8:ENST00000395383.5:ENST00000361997.9:ENST00000395379.5:ENST00000395386.7:ENST00000485595.5:ENST00000315808.14:ENST00000337920.8:ENST00000395376.5:ENST00000522580.5:ENST00000395390.6:ENST00000486199.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	40	2	1.76032	1.865875	1.97143	0.0721577	0.0398704	0.187433	0.161534
chr4	102800476	102800571	2213078	0	-	0.326316	(0.32,0.35]	chr4	216734	6	INTRON	INTRON	UBE2D3	ENSG00000109332.20	ENST00000453744.7:ENST00000394804.6:ENST00000618836.4:ENST00000394803.9:ENST00000394801.8:ENST00000343106.9:ENST00000508474.5:ENST00000503742.5:ENST00000321805.11:ENST00000350435.11:ENST00000338145.7:ENST00000349311.12:ENST00000504211.5:ENST00000505009.5:ENST00000357194.10:ENST00000505207.5:ENST00000507845.5:ENST00000502404.5:ENST00000508635.5:ENST00000505307.5:ENST00000510129.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	47	2	1.49965	1.865735	2.23182	0.068598	0.0542985	0.184298	0.182243
chr9	126836511	126836611	4199668	0	+	0.34	(0.32,0.35]	chr9	383330	27	UTR3	UTR3:EXON_MRNA	ZBTB43	ENSG00000169155.10	ENST00000449886.5:ENST00000373464.5:ENST00000373457.1	protein_coding	protein_coding	protein_coding	protein_coding	5	47	2	1.49965	1.865735	2.23182	0.068598	0.0542985	0.184298	0.182243
chr22	20556043	20556142	7479852	0	+	0.363636	(0.35,0.378]	chr22	763003	5	INTRON	INTRON	MED15	ENSG00000099917.17	ENST00000444094.5:ENST00000414658.5:ENST00000433831.5:ENST00000432052.5:ENST00000292733.11:ENST00000263205.11:ENST00000477824.5:ENST00000406969.5:ENST00000382974.6:ENST00000441501.5:ENST00000473028.5:ENST00000457322.5:ENST00000428629.5:ENST00000424287.5:ENST00000423862.5:ENST00000487550.5:ENST00000476767.5:ENST00000492381.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	14	132	2	1.56109	1.8656650000000001	2.17024	0.0134069	0.00397513	0.101104	0.0549214
chr2	181006332	181006432	936229	0	+	0.39	(0.378,0.408]	chr2	102627	164	INTRON	INTRON	UBE2E3	ENSG00000170035.16	ENST00000602303.5:ENST00000602959.5:ENST00000602479.5:ENST00000392415.6:ENST00000602291.5:ENST00000410062.9:ENST00000602499.5:ENST00000602710.5:ENST00000602762.5:ENST00000602888.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	10	93	2	1.78703	1.865645	1.94426	0.0240043	0.00520377	0.119664	0.0655609
chr8	129332149	129332249	4058580	0	-	0.37	(0.35,0.378]	chr8	369539	285	INTRON	INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000657400.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1	lncRNA	lncRNA	lncRNA	lncRNA	5	51	2	1.58862	1.86563	2.14264	0.0615516	0.0274795	0.193423	0.123904
chr16	218152	218252	6426075	0	-	0.42	(0.408,0.44]	chr16	617437	85	INTRON	INTRON	LUC7L	ENSG00000007392.17	ENST00000337351.8:ENST00000426094.5:ENST00000397783.5:ENST00000629543.2:ENST00000490762.5:ENST00000293872.13:ENST00000419516.5:ENST00000397780.5:ENST00000418978.5:ENST00000430864.5:ENST00000443357.5:ENST00000494366.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	28	238	2	1.61981	1.865595	2.11138	0.00339598	0.00106068	0.0536699	0.0298201
chr17	35826904	35827002	6601270	0	+	0.244898	[0,0.28]	chr17	642439	11	INTRON	INTRON	TAF15	ENSG00000270647.7	ENST00000605844.6:ENST00000603777.6:ENST00000604694.2:ENST00000689923.1:ENST00000603393.6:ENST00000685897.1:ENST00000603427.6:ENST00000604879.6:ENST00000604841.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	22	259	2	1.40942	1.865595	2.32177	0.0163191	0.00254713	0.109464	0.0448718
chrX	71409248	71409347	7678676	0	+	0.474747	(0.44,0.476]	chrX	786269	7	INTRON	INTRON	TAF1	ENSG00000147133.17	ENST00000683202.1:ENST00000373790.9:ENST00000423759.6:ENST00000683782.1:ENST00000683668.1:ENST00000276072.9:ENST00000463163.5:ENST00000373775.8:ENST00000485087.6:ENST00000437147.8:ENST00000683358.1:ENST00000682124.1:ENST00000461764.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	82	2	1.66775	1.86558	2.06341	0.0219883	0.00871005	0.123836	0.0788605
chr1	86875079	86875178	498719	0	-	0.555556	(0.515,0.57]	chr1	59184	66	INTRON	INTRON	SELENOF	ENSG00000183291.18	ENST00000331835.10:ENST00000370554.5:ENST00000648872.1:ENST00000469566.5:ENST00000401030.4:ENST00000497861.5:ENST00000467557.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	31	2	1.49871	1.8655599999999999	2.23241	0.0770828	0.0581268	0.196285	0.188651
chr2	135525415	135525514	1233445	0	-	0.363636	(0.35,0.378]	chr2	131245	206	INTRON	INTRON	ZRANB3	ENSG00000121988.18	ENST00000264159.11:ENST00000401392.5:ENST00000536680.5:ENST00000403017.2:ENST00000452187.6:ENST00000492193.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	42	2	1.75561	1.865555	1.9755	0.0739399	0.0398617	0.190914	0.161534
chr4	894921	895015	2093908	0	-	0.382979	(0.378,0.408]	chr4	206942	2	INTRON	INTRON	GAK	ENSG00000178950.18	ENST00000314167.9:ENST00000511163.5:ENST00000505819.5:ENST00000507580.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	93	2	1.60639	1.8654449999999998	2.1245	0.0205731	0.00724232	0.122348	0.0729826
chr2	61515080	61515178	1130987	0	-	0.428571	(0.408,0.44]	chr2	121606	2	INTRON	INTRON	XPO1	ENSG00000082898.19	ENST00000676553.1:ENST00000677556.1:ENST00000677814.1:ENST00000676771.1:ENST00000677803.1:ENST00000677239.1:ENST00000678790.1:ENST00000677928.1:ENST00000678182.1:ENST00000677150.1:ENST00000678172.1:ENST00000678360.1:ENST00000678081.1:ENST00000676889.1:ENST00000676783.1:ENST00000679035.1:ENST00000677422.1:ENST00000677417.1:ENST00000677813.1:ENST00000676999.1:ENST00000676667.1:ENST00000678263.1:ENST00000678877.1:ENST00000677933.1:ENST00000680228.1:ENST00000677289.1:ENST00000677190.1:ENST00000401558.7:ENST00000428210.5:ENST00000677290.1:ENST00000677850.1:ENST00000451765.6:ENST00000676789.1:ENST00000678741.1:ENST00000404992.6:ENST00000406957.5:ENST00000443240.5:ENST00000476585.5:ENST00000468259.1:ENST00000420673.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	47	2	1.74775	1.8654250000000001	1.9831	0.0735403	0.018491	0.190238	0.116694
chr2	58217734	58217834	1126514	0	-	0.35	(0.32,0.35]	chr2	120942	3	SS3_PROX	SS3_PROX:INTRON	FANCL	ENSG00000115392.13	ENST00000696400.1:ENST00000403295.8:ENST00000696492.1:ENST00000427708.7:ENST00000696314.1:ENST00000696315.1:ENST00000696454.1:ENST00000696508.1:ENST00000696548.1:ENST00000696542.1:ENST00000696319.1:ENST00000403676.6:ENST00000696433.1:ENST00000696434.1:ENST00000696499.1:ENST00000696564.1:ENST00000402135.8:ENST00000696546.1:ENST00000233741.9:ENST00000696316.1:ENST00000696378.1:ENST00000696435.1:ENST00000696493.1:ENST00000696543.1:ENST00000696544.1:ENST00000696545.1:ENST00000696565.1:ENST00000696620.1:ENST00000696621.1:ENST00000696635.1:ENST00000696364.1:ENST00000696634.1:ENST00000696317.1:ENST00000696622.1:ENST00000696467.1:ENST00000696547.1:ENST00000449070.6:ENST00000696305.1:ENST00000417361.2:ENST00000696338.1:ENST00000696361.1:ENST00000696318.1:ENST00000696371.1:ENST00000696409.1:ENST00000696410.1:ENST00000696455.1:ENST00000696468.1:ENST00000696527.1:ENST00000696567.1:ENST00000696324.1:ENST00000696566.1:ENST00000696623.1:ENST00000446381.6:ENST00000696469.1:ENST00000696624.1:ENST00000696411.1:ENST00000470506.2:ENST00000696358.1:ENST00000696373.1:ENST00000696394.1:ENST00000696320.1:ENST00000696395.1:ENST00000696341.1:ENST00000696340.1:ENST00000696374.1:ENST00000696396.1:ENST00000696342.1:ENST00000696325.1:ENST00000696399.1:ENST00000696398.1:ENST00000696306.1:ENST00000696397.1:ENST00000696360.1:ENST00000696344.1:ENST00000696343.1:ENST00000696362.1:ENST00000696528.1:ENST00000696326.1:ENST00000696625.1:ENST00000696510.1:ENST00000696438.1:ENST00000696496.1:ENST00000696509.1:ENST00000696569.1:ENST00000696457.1:ENST00000696458.1:ENST00000696473.1:ENST00000696495.1:ENST00000696415.1:ENST00000696472.1:ENST00000696459.1:ENST00000696416.1:ENST00000696530.1:ENST00000696460.1:ENST00000696570.1:ENST00000696531.1:ENST00000696307.1:ENST00000696345.1:ENST00000696377.1:ENST00000696417.1:ENST00000696594.1:ENST00000696595.1:ENST00000696379.1:ENST00000696346.1:ENST00000696380.1:ENST00000696347.1:ENST00000696461.1:ENST00000696596.1:ENST00000696549.1:ENST00000696597.1:ENST00000696550.1:ENST00000696598.1:ENST00000696321.1:ENST00000696476.1:ENST00000696477.1:ENST00000696511.1:ENST00000481670.3:ENST00000696403.1:ENST00000696551.1:ENST00000696308.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	76	2	1.70947	1.8654	2.02133	0.0328375	0.017146	0.133816	0.111072
chr1	153903979	153904079	557577	0	-	0.53	(0.515,0.57]	chr1	65995	46	INTRON	INTRON	GATAD2B	ENSG00000143614.10	ENST00000368655.5:ENST00000634544.1:ENST00000634408.1:ENST00000634401.1:ENST00000634791.1:ENST00000637331.1:ENST00000636008.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	33	2	1.86007	1.8653849999999998	1.8707	0.0526611	0.0523213	0.178401	0.160182
chr18	3248184	3248276	6866437	0	+	0.521739	(0.515,0.57]	chr18	680229	4	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	MYL12A	ENSG00000101608.13	ENST00000579226.5:ENST00000217652.8:ENST00000580353.1:ENST00000578611.5:ENST00000585090.1:ENST00000583449.1:ENST00000608786.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	33	2	1.86007	1.8653849999999998	1.8707	0.0526611	0.0523213	0.178401	0.160182
chr19	2170345	2170445	6996233	0	+	0.53	(0.515,0.57]	chr19	693417	57	INTRON	INTRON	DOT1L	ENSG00000104885.19	ENST00000398665.8:ENST00000686010.1:ENST00000452696.5:ENST00000478937.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	33	2	1.86007	1.8653849999999998	1.8707	0.0526611	0.0523213	0.178401	0.160182
chr21	43074424	43074522	7468157	0	-	0.530612	(0.515,0.57]	chr21	761086	7	INTRON	INTRON	CBS	ENSG00000160200.18	ENST00000352178.9:ENST00000359624.7:ENST00000398165.8:ENST00000398158.5:ENST00000441030.5:ENST00000470912.5:ENST00000465732.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	33	2	1.86007	1.8653849999999998	1.8707	0.0526611	0.0523213	0.178401	0.160182
chr17	46147124	46147224	6784407	0	-	0.29	(0.28,0.32]	chr17	669216	259	INTRON	INTRON	KANSL1	ENSG00000120071.15	ENST00000574590.6:ENST00000572904.6:ENST00000432791.7:ENST00000575318.6:ENST00000638275.1:ENST00000262419.10:ENST00000648792.1:ENST00000639531.1:ENST00000639150.1:ENST00000639853.1:ENST00000571698.2:ENST00000639375.1:ENST00000638269.1:ENST00000576248.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	82	2	1.47775	1.865365	2.25298	0.0653002	0.00791652	0.180158	0.0797304
chr15	30673351	30673450	5992755	0	+	0.414141	(0.408,0.44]	chr15	569767	142	INTRON	INTRON	ENSG00000284906:ENSG00000285035:ENSG00000187951	ENSG00000284906.3:ENSG00000285035.2:ENSG00000187951.11	ENST00000685924.1:ENST00000563110.6:ENST00000566548.5:ENST00000602616.6:ENST00000562954.1	protein_coding	protein_coding	protein_coding:lncRNA:transcribed_unprocessed_pseudogene	protein_coding:nonsense_mediated_decay:lncRNA:processed_transcript	10	91	2	1.70477	1.86534	2.02591	0.0215835	0.00531945	0.114814	0.0660391
chr2	61507160	61507259	1130905	0	-	0.464646	(0.44,0.476]	chr2	121597	45	INTRON	INTRON	XPO1	ENSG00000082898.19	ENST00000677110.1:ENST00000676553.1:ENST00000677556.1:ENST00000677814.1:ENST00000676771.1:ENST00000677803.1:ENST00000677239.1:ENST00000678790.1:ENST00000677928.1:ENST00000678182.1:ENST00000677150.1:ENST00000678172.1:ENST00000678360.1:ENST00000678081.1:ENST00000676889.1:ENST00000676783.1:ENST00000679035.1:ENST00000677422.1:ENST00000677417.1:ENST00000677813.1:ENST00000676999.1:ENST00000676667.1:ENST00000678263.1:ENST00000678877.1:ENST00000677933.1:ENST00000680228.1:ENST00000677289.1:ENST00000677190.1:ENST00000401558.7:ENST00000428210.5:ENST00000677290.1:ENST00000677850.1:ENST00000451765.6:ENST00000676789.1:ENST00000678741.1:ENST00000404992.6:ENST00000406957.5:ENST00000443240.5:ENST00000476585.5:ENST00000468259.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	13	116	2	1.54523	1.86534	2.18545	0.0226567	0.00161833	0.117618	0.0369252
chr16	70257632	70257732	6510154	0	-	0.49	(0.476,0.515]	chr16	630524	19	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	AARS1	ENSG00000090861.17	ENST00000674963.1:ENST00000675643.1:ENST00000675917.1:ENST00000674691.1:ENST00000261772.13:ENST00000675569.1:ENST00000676209.1:ENST00000676211.1:ENST00000676040.1:ENST00000675953.1:ENST00000675691.1:ENST00000676004.1:ENST00000675270.1:ENST00000675403.1:ENST00000676212.1:ENST00000675045.1:ENST00000675035.1:ENST00000676168.1:ENST00000674652.1:ENST00000675133.1:ENST00000675120.1:ENST00000674811.1:ENST00000674512.1:ENST00000675853.1:ENST00000565361.3:ENST00000676247.1:ENST00000674848.1:ENST00000674962.1:ENST00000675371.1:ENST00000675986.1:ENST00000674768.1:ENST00000675297.1:ENST00000675751.1:ENST00000564359.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	77	2	1.59493	1.8653300000000002	2.13573	0.0213255	0.0119549	0.123504	0.0899583
chr1	234477176	234477275	661416	0	-	0.232323	[0,0.28]	chr1	78262	40	INTRON	INTRON	TARBP1	ENSG00000059588.10	ENST00000040877.2	protein_coding	protein_coding	protein_coding	protein_coding	9	102	2	1.24293	1.865325	2.48772	0.0642521	0.0125761	0.19963	0.0926667
chr12	46372684	46372773	5316710	0	-	0.674157	(0.57,1]	chr12	505831	3	UTR5	UTR5:EXON_MRNA	SLC38A2	ENSG00000134294.14	ENST00000256689.10:ENST00000549258.5:ENST00000553252.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	42	2	1.50683	1.865245	2.22366	0.0378927	0.00344378	0.141283	0.0539802
chrX	71411239	71411338	7678696	0	+	0.474747	(0.44,0.476]	chrX	786269	27	INTRON	INTRON	TAF1	ENSG00000147133.17	ENST00000683202.1:ENST00000373790.9:ENST00000423759.6:ENST00000683782.1:ENST00000683668.1:ENST00000276072.9:ENST00000463163.5:ENST00000373775.8:ENST00000485087.6:ENST00000437147.8:ENST00000683358.1:ENST00000682124.1:ENST00000461764.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	56	2	1.72421	1.8651499999999999	2.00609	0.0360127	0.0285163	0.152355	0.12666
chr12	110542221	110542319	5410080	0	-	0.387755	(0.378,0.408]	chr12	516620	19	INTRON	INTRON	PPTC7	ENSG00000196850.6	ENST00000354300.5:ENST00000548721.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	36	2	1.59317	1.8651	2.13703	0.0797592	0.0603812	0.19979	0.19151
chr20	8495337	8495437	7235089	0	+	0.38	(0.378,0.408]	chr20	734917	1233	INTRON	INTRON	PLCB1	ENSG00000182621.18	ENST00000637919.1:ENST00000625874.2:ENST00000630495.2:ENST00000378641.7:ENST00000338037.11:ENST00000629992.2:ENST00000636319.1:ENST00000626161.1:ENST00000404098.6:ENST00000378637.6:ENST00000636825.1:ENST00000635830.1:ENST00000636784.1:ENST00000626114.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	36	2	1.59317	1.8651	2.13703	0.0797592	0.0603812	0.19979	0.19151
chr20	41056801	41056901	7273786	0	+	0.39	(0.378,0.408]	chr20	739216	270	INTRON	INTRON	TOP1	ENSG00000198900.7	ENST00000361337.3:ENST00000681113.1:ENST00000681058.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	36	2	1.59317	1.8651	2.13703	0.0797592	0.0603812	0.19979	0.19151
chr5	54293017	54293116	2620743	0	-	0.393939	(0.378,0.408]	chr5	248862	68	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2:ENST00000505630.5:ENST00000505383.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	36	2	1.59317	1.8651	2.13703	0.0797592	0.0603812	0.19979	0.19151
chr8	31044772	31044872	3728041	0	+	0.34	(0.32,0.35]	chr8	346522	104	INTRON	INTRON	WRN	ENSG00000165392.11	ENST00000650667.1:ENST00000298139.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	91	2	1.56912	1.865055	2.16099	0.0247709	0.0127227	0.131869	0.0926667
chr4	78788702	78788802	1981508	0	+	0.36	(0.35,0.378]	chr4	198463	116	INTRON	INTRON	BMP2K	ENSG00000138756.19	ENST00000389010.7:ENST00000502613.3:ENST00000502871.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	101	2	1.79087	1.865035	1.9392	0.0126818	0.0126486	0.0982897	0.0926667
chr4	78895862	78895961	1982603	0	+	0.474747	(0.44,0.476]	chr4	198558	82	INTRON	INTRON	BMP2K	ENSG00000138756.19	ENST00000502613.3	protein_coding	protein_coding	protein_coding	protein_coding	8	73	2	1.76195	1.865	1.96805	0.0252608	0.0109533	0.12011	0.0925675
chr10	21703401	21703501	4406124	0	+	0.34	(0.32,0.35]	chr10	406537	64	INTRON	INTRON	MLLT10	ENSG00000078403.17	ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000651298.1:ENST00000377059.7:ENST00000651382.1:ENST00000438473.6:ENST00000420525.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	70	2	1.6868	1.864585	2.04237	0.0375542	0.0217601	0.140222	0.123836
chr15	63546425	63546525	6042334	0	+	0.34	(0.32,0.35]	chr15	575406	13	INTRON	INTRON	USP3	ENSG00000140455.17	ENST00000540797.5:ENST00000380324.8:ENST00000561442.5:ENST00000560070.5:ENST00000557884.5:ENST00000558157.5:ENST00000561326.5:ENST00000559873.5:ENST00000559192.5:ENST00000559771.5:ENST00000268049.11:ENST00000558285.5:ENST00000559257.5:ENST00000538686.6:ENST00000559711.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	69	2	1.46273	1.864565	2.2664	0.0451962	0.0199969	0.163755	0.109608
chr2	74202068	74202166	813262	0	+	0.316327	(0.28,0.32]	chr2	90925	7	EXON_MRNA	EXON_MRNA:INTRON	MTHFD2	ENSG00000065911.13	ENST00000677997.1:ENST00000677170.1:ENST00000678684.1:ENST00000409804.5:ENST00000489041.2:ENST00000470592.5:ENST00000678955.1:ENST00000394053.7:ENST00000677377.1:ENST00000679055.1:ENST00000678340.1:ENST00000477455.5:ENST00000409601.1:ENST00000678228.1:ENST00000488086.1:ENST00000462026.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	89	2	1.32455	1.864565	2.40458	0.0474504	0.0141047	0.169423	0.0959618
chr4	32049389	32049489	1941942	0	+	0.35	(0.32,0.35]	chr4	194727	512	INTRON	INTRON	LINC02506	ENSG00000251129.3	ENST00000662669.1:ENST00000665582.2:ENST00000667252.2:ENST00000660373.2:ENST00000684849.1:ENST00000513211.2:ENST00000659613.1:ENST00000657576.1:ENST00000686730.1:ENST00000685407.1:ENST00000685455.1:ENST00000655951.1	lncRNA	lncRNA	lncRNA	lncRNA	7	69	2	1.46273	1.864565	2.2664	0.0451962	0.0199969	0.163755	0.109608
chr15	80074292	80074385	6071183	0	+	0.333333	(0.32,0.35]	chr15	578315	6	INTRON	INTRON	ZFAND6	ENSG00000086666.19	ENST00000613266.4:ENST00000561060.5:ENST00000559157.5:ENST00000261749.11:ENST00000561012.5:ENST00000564367.5:ENST00000558494.5:ENST00000618205.4:ENST00000560470.5:ENST00000560228.5:ENST00000559835.5:ENST00000559775.5:ENST00000558688.5:ENST00000560976.5:ENST00000560392.5:ENST00000558390.5:ENST00000558272.5:ENST00000557793.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	71	2	1.787	1.8645100000000001	1.94202	0.0486128	0.0151818	0.153946	0.108535
chr15	41298040	41298139	6004529	0	+	0.424242	(0.408,0.44]	chr15	571273	1	EXON_LNCRNA	EXON_LNCRNA:INTRON	OIP5-AS1	ENSG00000247556.6	ENST00000558945.5:ENST00000500949.6:ENST00000560706.5:ENST00000501665.2	lncRNA	lncRNA	lncRNA	lncRNA	14	127	2	1.6007	1.8644699999999998	2.12824	0.02345	0.00105694	0.11867	0.0299563
chr1	213186874	213186973	312066	0	+	0.414141	(0.408,0.44]	chr1	35957	100	INTRON	INTRON	RPS6KC1	ENSG00000136643.12	ENST00000615329.4:ENST00000543354.5:ENST00000614059.4:ENST00000543470.5:ENST00000366960.8:ENST00000366959.4:ENST00000490299.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	60	2	1.66945	1.8644600000000002	2.05947	0.0333232	0.0218479	0.134145	0.123836
chr10	74026144	74026244	4454782	0	+	0.51	(0.476,0.515]	chr10	411391	89	INTRON	INTRON	VCL	ENSG00000035403.18	ENST00000623461.3:ENST00000372755.7:ENST00000624354.3:ENST00000211998.10:ENST00000478896.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	53	2	1.73688	1.864425	1.99197	0.039572	0.0252731	0.143072	0.133676
chr18	46229693	46229792	6899642	0	+	0.484848	(0.476,0.515]	chr18	683622	4	INTRON	INTRON	C18orf25	ENSG00000152242.11	ENST00000588730.1:ENST00000615052.5:ENST00000619301.4:ENST00000615553.1	protein_coding	protein_coding	protein_coding	protein_coding	6	53	2	1.73688	1.864425	1.99197	0.039572	0.0252731	0.143072	0.133676
chr11	64244478	64244569	4964695	0	-	0.417582	(0.408,0.44]	chr11	467319	1	UTR3	UTR3:EXON_MRNA	PPP1R14B	ENSG00000173457.11	ENST00000309318.8:ENST00000392210.6:ENST00000542235.1	protein_coding	protein_coding	protein_coding	protein_coding	13	116	2	1.61114	1.86441	2.11768	0.0148616	0.00352982	0.0989021	0.0546236
chr21	6494700	6494799	7425424	0	-	0.292929	(0.28,0.32]	chr21	757479	17	EXON_MRNA	EXON_MRNA:INTRON	ENSG00000275895	ENSG00000275895.7	ENST00000610664.5:ENST00000623375.3:ENST00000639996.1:ENST00000620065.4:ENST00000624739.1:ENST00000619610.2:ENST00000636315.1:ENST00000637031.1:ENST00000636177.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	82	2	1.76061	1.864315	1.96802	0.0253826	0.0251578	0.133676	0.12011
chr5	131720815	131720915	2719980	0	-	0.4	(0.378,0.408]	chr5	255718	10	INTRON	INTRON	FNIP1	ENSG00000217128.13	ENST00000510461.6:ENST00000307954.12:ENST00000307968.11:ENST00000511848.1	protein_coding	protein_coding	protein_coding	protein_coding	6	58	2	1.63458	1.8643	2.09402	0.0573057	0.0126438	0.167723	0.0982897
chr19	2272344	2272441	6997103	0	+	0.587629	(0.57,1]	chr19	693662	5	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	OAZ1	ENSG00000104904.12	ENST00000590943.6:ENST00000602676.6:ENST00000581150.6:ENST00000582888.8:ENST00000593012.1:ENST00000588673.3:ENST00000586054.2:ENST00000589361.2:ENST00000592727.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	29	2	1.77365	1.864245	1.95484	0.0670385	0.0113205	0.183051	0.0948452
chr15	61853077	61853175	6196024	0	-	0.408163	(0.378,0.408]	chr15	590477	8	UTR3	UTR3:EXON_MRNA	VPS13C	ENSG00000129003.19	ENST00000249837.7:ENST00000644861.2:ENST00000560637.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	58	2	1.73164	1.86421	1.99678	0.0441773	0.0177959	0.149888	0.113452
chr2	26044480	26044580	713203	0	+	0.38	(0.378,0.408]	chr2	82440	18	INTRON	INTRON	RAB10	ENSG00000084733.11	ENST00000264710.5:ENST00000495146.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	58	2	1.73164	1.86421	1.99678	0.0441773	0.0177959	0.149888	0.113452
chr5	53999212	53999312	2617796	0	-	0.37	(0.35,0.378]	chr5	248835	872	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	89	2	1.85092	1.86411	1.8773	0.0184031	0.0114682	0.108834	0.0956037
chr15	40690938	40691038	6151112	0	-	0.4	(0.378,0.408]	chr15	585082	27	INTRON	INTRON	RAD51-AS1	ENSG00000245849.8	ENST00000526635.2:ENST00000650326.1:ENST00000533146.5	lncRNA	lncRNA	lncRNA	lncRNA	8	74	2	1.82004	1.86408	1.90812	0.0264295	0.012605	0.122506	0.0980801
chr6	28158470	28158569	2839496	0	+	0.393939	(0.378,0.408]	chr6	266538	46	UTR3	UTR3:EXON_MRNA	ZKSCAN8	ENSG00000198315.11	ENST00000330236.7	protein_coding	protein_coding	protein_coding	protein_coding	22	195	2	1.63959	1.86408	2.08857	0.00458434	0.00199882	0.0622822	0.0406929
chr1	23027587	23027686	43839	0	+	0.40404	(0.378,0.408]	chr1	5252	73	INTRON	INTRON	KDM1A	ENSG00000004487.18	ENST00000692214.1:ENST00000686934.1:ENST00000689853.1:ENST00000465864.2:ENST00000691256.1:ENST00000688122.1:ENST00000692056.1:ENST00000692853.1:ENST00000689366.1:ENST00000686270.1:ENST00000685102.1:ENST00000690627.1:ENST00000686771.1:ENST00000692209.1:ENST00000686339.1:ENST00000691813.1:ENST00000693156.1:ENST00000688235.1:ENST00000692975.1:ENST00000687202.1:ENST00000691682.1:ENST00000691404.1:ENST00000691694.1:ENST00000688680.1:ENST00000356634.7:ENST00000400181.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	14	119	2	1.57641	1.8640050000000001	2.1516	0.0103338	0.0065185	0.0895167	0.0699952
chr2	96632137	96632231	1181135	0	-	0.37234	(0.35,0.378]	chr2	126519	2	INTRON	INTRON	KANSL3	ENSG00000114982.19	ENST00000354204.10:ENST00000431828.6:ENST00000487070.5:ENST00000420155.5:ENST00000670907.1:ENST00000666923.1:ENST00000597150.5:ENST00000444759.5:ENST00000452268.5:ENST00000425656.5:ENST00000448075.1:ENST00000451819.5:ENST00000416138.1:ENST00000418735.1:ENST00000475820.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	14	125	2	1.54568	1.86392	2.18216	0.0122334	0.00609701	0.0969406	0.0676501
chr17	60293582	60293682	6804884	0	-	0.39	(0.378,0.408]	chr17	672342	45	INTRON	INTRON	USP32	ENSG00000170832.13	ENST00000300896.9:ENST00000590133.5:ENST00000589335.5:ENST00000393003.7	protein_coding	protein_coding	protein_coding	protein_coding	8	74	2	1.58985	1.8639100000000002	2.13797	0.0290335	0.0124882	0.141186	0.0923444
chr15	56958074	56958174	6032506	0	+	0.45	(0.44,0.476]	chr15	574663	366	INTRON	INTRON	TCF12	ENSG00000140262.18	ENST00000438423.6:ENST00000267811.9:ENST00000333725.10:ENST00000560190.5:ENST00000559609.5:ENST00000558908.5:ENST00000557843.5:ENST00000557947.5:ENST00000561152.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	64	2	1.64563	1.86387	2.08211	0.0363922	0.0130715	0.138959	0.0996047
chr16	16656940	16657039	6312435	0	+	0.262626	[0,0.28]	chr16	604112	81	INTRON	INTRON	ENSG00000260126	ENSG00000260126.2	ENST00000567465.2	lncRNA	lncRNA	lncRNA	lncRNA	8	107	2	1.59598	1.86387	2.13176	0.0401089	0.0135097	0.143774	0.101363
chr6	85614559	85614657	3151157	0	-	0.316327	(0.28,0.32]	chr6	293861	13	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	ENSG00000271793:SYNCRIP	ENSG00000271793.2:ENSG00000135316.19	ENST00000682083.1:ENST00000683074.1:ENST00000681965.1:ENST00000682504.1:ENST00000682106.1:ENST00000683364.1:ENST00000683436.1:ENST00000684220.1:ENST00000683909.1:ENST00000684462.1:ENST00000503906.1:ENST00000616122.5:ENST00000678528.1:ENST00000676637.1:ENST00000677771.1:ENST00000355238.11:ENST00000678878.1:ENST00000677481.1:ENST00000677646.1:ENST00000676630.1:ENST00000678618.1:ENST00000676542.1:ENST00000677059.1:ENST00000444272.2:ENST00000678899.1:ENST00000369622.8:ENST00000678355.1:ENST00000676688.1:ENST00000677514.1:ENST00000678816.1:ENST00000678930.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	49	2	1.76293	1.8638400000000002	1.96475	0.0766478	0.0428385	0.196164	0.162255
chr9	131440248	131440346	4217436	0	+	0.295918	(0.28,0.32]	chr9	386746	8	INTRON	INTRON	PRRC2B	ENSG00000288701.1	ENST00000684596.1:ENST00000683519.1:ENST00000682501.1	protein_coding	protein_coding	protein_coding	protein_coding	4	49	2	1.76293	1.8638400000000002	1.96475	0.0766478	0.0428385	0.196164	0.162255
chr16	18785013	18785107	6456623	0	-	0.531915	(0.515,0.57]	chr16	622513	3	EXON_LNCRNA	EXON_LNCRNA:SS3_PROX:INTRON	RPS15A	ENSG00000134419.15	ENST00000322989.8:ENST00000572008.5:ENST00000563390.5:ENST00000574723.5:ENST00000576008.5:ENST00000562935.5:ENST00000569365.6:ENST00000576436.5:ENST00000575669.1:ENST00000565420.5:ENST00000569083.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	40	2	1.69407	1.86384	2.03361	0.0459452	0.0325854	0.149888	0.145164
chr1	171538671	171538771	253762	0	+	0.33	(0.32,0.35]	chr1	30174	8	INTRON	INTRON	PRRC2C	ENSG00000117523.18	ENST00000647382.2:ENST00000367742.7:ENST00000338920.8:ENST00000426496.6	protein_coding	protein_coding	protein_coding	protein_coding	5	55	2	1.64769	1.8637700000000001	2.07985	0.0578603	0.0303092	0.167723	0.143025
chr10	116895232	116895331	4699383	0	-	0.313131	(0.28,0.32]	chr10	433605	83	INTRON	INTRON	SHTN1	ENSG00000187164.20	ENST00000355371.9:ENST00000615301.4:ENST00000260777.14:ENST00000497044.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	59	2	1.76378	1.86377	1.96376	0.0480066	0.0395495	0.161534	0.153019
chr3	9734939	9735039	1360357	0	+	0.31	(0.28,0.32]	chr3	142967	2	SS5_PROX	SS5_PROX:INTRON	BRPF1	ENSG00000156983.17	ENST00000433861.6:ENST00000383829.7:ENST00000684333.1:ENST00000684608.1:ENST00000683743.1:ENST00000684206.1:ENST00000683639.1:ENST00000420291.3:ENST00000424362.7:ENST00000673551.2:ENST00000684199.1:ENST00000426583.2:ENST00000457855.2:ENST00000682208.1:ENST00000682980.1:ENST00000672515.2:ENST00000672126.2:ENST00000683423.1:ENST00000684223.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	59	2	1.76378	1.86377	1.96376	0.0480066	0.0395495	0.161534	0.153019
chr4	78827149	78827248	1981895	0	+	0.353535	(0.35,0.378]	chr4	198473	6	INTRON	INTRON	BMP2K	ENSG00000138756.19	ENST00000389010.7:ENST00000502613.3:ENST00000502871.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	61	2	1.6122	1.863755	2.11531	0.0616849	0.0119629	0.174021	0.0962115
chr5	65935198	65935298	2370930	0	+	0.37	(0.35,0.378]	chr5	228472	80	INTRON	INTRON	ERBIN	ENSG00000112851.15	ENST00000380943.6:ENST00000507490.1:ENST00000416865.6:ENST00000380935.5:ENST00000284037.10:ENST00000380938.6:ENST00000511297.5:ENST00000506030.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	61	2	1.6122	1.863755	2.11531	0.0616849	0.0119629	0.174021	0.0962115
chr2	131211283	131211383	865471	0	+	0.64	(0.57,1]	chr2	97181	1	SS5_PROX	SS5_PROX:INTRON	PLEKHB2:POTEE	ENSG00000115762.17:ENSG00000188219.16	ENST00000404460.5:ENST00000683005.1	protein_coding	protein_coding	protein_coding	protein_coding	14	54	2	1.07841	1.8637200000000003	2.64903	0.0585797	9.85026e-4	0.167915	0.0288488
chr6	157836096	157836196	3015891	0	+	0.38	(0.378,0.408]	chr6	281353	60	INTRON	INTRON	SNX9	ENSG00000130340.17	ENST00000614703.4:ENST00000614800.4:ENST00000680863.1:ENST00000679814.1:ENST00000680464.1:ENST00000681186.1:ENST00000679732.1:ENST00000681183.1:ENST00000681534.1:ENST00000681651.1:ENST00000680089.1:ENST00000680078.1:ENST00000680974.1:ENST00000680095.1:ENST00000680015.1:ENST00000681138.1:ENST00000392185.8:ENST00000679790.1:ENST00000680495.1:ENST00000679691.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	76	2	1.67942	1.8637	2.04798	0.0336706	0.00809949	0.134145	0.0808864
chr7	105042320	105042420	3374905	0	+	0.22	[0,0.28]	chr7	315877	9	INTRON	INTRON	KMT2E	ENSG00000005483.22	ENST00000622386.2:ENST00000257745.9:ENST00000334884.9:ENST00000311117.8:ENST00000478990.5:ENST00000495267.5:ENST00000476671.5:ENST00000667857.1:ENST00000474203.5:ENST00000482560.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	138	2	1.83908	1.8636400000000002	1.8882	0.0349837	0.00678547	0.137515	0.0743502
chr1	47268444	47268542	445638	0	-	0.428571	(0.408,0.44]	chr1	53995	50	INTRON	INTRON	STIL	ENSG00000123473.17	ENST00000360380.7:ENST00000371877.8:ENST00000337817.10:ENST00000682940.1:ENST00000683977.1:ENST00000682977.1:ENST00000396221.6:ENST00000684618.1:ENST00000447475.7:ENST00000418131.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	9	83	2	1.58026	1.86364	2.14702	0.0444624	0.0030836	0.149888	0.0510391
chr7	119647770	119647870	3627814	0	-	0.47	(0.44,0.476]	chr7	337315	1473	INTRON	INTRON	LINC02476	ENSG00000225546.6	ENST00000660268.1	lncRNA	lncRNA	lncRNA	lncRNA	7	65	2	1.79873	1.86355	1.92837	0.0223888	0.0222222	0.124303	0.116918
chr19	11099326	11099425	7016912	0	+	0.323232	(0.32,0.35]	chr19	697422	81	INTRON	INTRON	LDLR	ENSG00000130164.14	ENST00000557933.5:ENST00000558518.6:ENST00000545707.5:ENST00000535915.5:ENST00000455727.6:ENST00000557958.1:ENST00000560502.5:ENST00000558013.5:ENST00000252444.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	71	2	1.37114	1.863525	2.35591	0.0648061	0.0128129	0.179337	0.0990564
chr1	167282111	167282210	245466	0	+	0.40404	(0.378,0.408]	chr1	29273	72	INTRON	INTRON	POU2F1	ENSG00000143190.23	ENST00000559038.5:ENST00000367866.7:ENST00000557909.5:ENST00000271411.8:ENST00000429375.6:ENST00000560232.6:ENST00000442313.5:ENST00000367865.5:ENST00000492850.5:ENST00000541643.7:ENST00000648671.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	48	2	1.78011	1.86346	1.94681	0.0457723	0.0356367	0.151629	0.149888
chr19	28498045	28498145	7166075	0	-	0.41	(0.408,0.44]	chr19	724189	298	INTRON	INTRON	ENSG00000283403:ENSG00000267243	ENSG00000283403.1:ENSG00000267243.6	ENST00000592347.5:ENST00000593065.5	lncRNA	lncRNA	lncRNA	lncRNA	24	214	2	1.83055	1.86346	1.8963699999999999	0.00309978	0.00152045	0.0498063	0.0360297
chr9	130877028	130877126	4215500	0	+	0.387755	(0.378,0.408]	chr9	386466	16	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000318560.6	protein_coding	protein_coding	protein_coding	protein_coding	8	74	2	1.37524	1.86346	2.35168	0.0610755	0.0046563	0.172411	0.0629753
chr15	101964186	101964283	6117495	0	+	0.391753	(0.378,0.408]	chr15	582288	22	INTRON	INTRON	WASH3P	ENSG00000185596.16	ENST00000559884.5:ENST00000558686.5:ENST00000354296.9:ENST00000559163.6	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	5	49	2	1.68393	1.8634249999999999	2.04292	0.0503034	0.0326035	0.156383	0.145164
chr16	74963247	74963347	6527074	0	-	0.33	(0.32,0.35]	chr16	632151	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	WDR59	ENSG00000103091.15	ENST00000262144.11:ENST00000616369.4:ENST00000536050.5:ENST00000568462.5:ENST00000568323.5:ENST00000563111.2:ENST00000562331.5:ENST00000564859.1:ENST00000569421.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	56	2	1.77409	1.8634	1.95271	0.0431213	0.0414296	0.162255	0.146067
chr7	130087498	130087598	3413764	0	+	0.29	(0.28,0.32]	chr7	319098	163	INTRON	INTRON	KLHDC10	ENSG00000128607.14	ENST00000335420.10:ENST00000463413.1:ENST00000468226.1	protein_coding	protein_coding	protein_coding	protein_coding	14	147	2	1.57235	1.8633449999999998	2.15434	0.0124803	0.00818138	0.0974878	0.0768236
chr16	23891166	23891266	6324312	0	+	0.41	(0.408,0.44]	chr16	605697	220	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000645517.1:ENST00000498739.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	91	2	1.76523	1.863275	1.96132	0.0174785	0.00701866	0.10482	0.0754576
chr4	445630	445730	2092635	0	-	0.22	[0,0.28]	chr4	206783	8	INTRON	INTRON	ABCA11P:ZNF721	ENSG00000251595.7:ENSG00000182903.16	ENST00000451020.6:ENST00000514396.5:ENST00000507854.1:ENST00000515578.5:ENST00000506646.5:ENST00000507078.1:ENST00000511833.3:ENST00000338977.5:ENST00000505900.1	protein_coding	protein_coding	protein_coding:transcribed_processed_pseudogene	protein_coding:nonsense_mediated_decay:processed_transcript	7	94	2	1.79667	1.863155	1.92964	0.0445299	0.0157154	0.149888	0.109464
chr3	25739724	25739799	1642395	0	-	0.36	(0.35,0.378]	chr3	168648	3	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	NGLY1	ENSG00000151092.18	ENST00000280700.10:ENST00000428257.5:ENST00000675217.1:ENST00000676225.1:ENST00000493324.5:ENST00000396649.7:ENST00000675178.1:ENST00000675680.1:ENST00000308710.9:ENST00000280699.13:ENST00000674841.1:ENST00000675234.1:ENST00000463611.2:ENST00000417874.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	89	2	1.54128	1.86311	2.18494	0.0385205	0.0047516	0.1426	0.0635784
chr10	70756574	70756673	4448182	0	+	0.434343	(0.408,0.44]	chr10	410464	22	INTRON	INTRON	ADAMTS14	ENSG00000138316.11	ENST00000373207.2:ENST00000373208.5	protein_coding	protein_coding	protein_coding	protein_coding	6	56	2	1.69172	1.8630149999999999	2.03431	0.0486032	0.0154896	0.153946	0.108998
chr6	68670424	68670524	2886670	0	+	0.32	(0.28,0.32]	chr6	273730	306	INTRON	INTRON	ADGRB3	ENSG00000135298.15	ENST00000370598.6:ENST00000684661.1:ENST00000546190.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	60	2	1.64432	1.862905	2.08149	0.0606133	0.031124	0.171142	0.143644
chr21	46267878	46267970	7471244	0	-	0.532609	(0.515,0.57]	chr21	761660	9	EXON_MRNA	EXON_MRNA:INTRON	MCM3AP	ENSG00000160294.11	ENST00000397708.1:ENST00000291688.6:ENST00000486937.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	16	117	2	1.65324	1.8628399999999998	2.07244	0.00654823	0.00293638	0.0735539	0.0483234
chr3	154279387	154279486	1843063	0	-	0.373737	(0.35,0.378]	chr3	185358	10	EXON_MRNA	EXON_MRNA:INTRON	DHX36	ENSG00000174953.14	ENST00000496811.6:ENST00000308361.10:ENST00000329463.9:ENST00000479934.5:ENST00000481941.5:ENST00000460695.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	89	2	1.74826	1.862775	1.97729	0.0279529	0.00688871	0.124524	0.0750118
chr1	213191765	213191865	312115	0	+	0.4	(0.378,0.408]	chr1	35957	149	INTRON	INTRON	RPS6KC1	ENSG00000136643.12	ENST00000615329.4:ENST00000543354.5:ENST00000614059.4:ENST00000543470.5:ENST00000366960.8:ENST00000366959.4:ENST00000490299.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	15	125	2	1.54723	1.8627150000000001	2.1782	0.0101694	0.00587071	0.089002	0.0668474
chr11	82689698	82689768	4839825	0	+	0.671429	(0.57,1]	chr11	451398	3	EXON_PSEUDO	EXON_PSEUDO	RPS28P7	ENSG00000227097.5	ENST00000473748.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	12	55	2	1.77528	1.862695	1.95011	0.0141212	0.00297177	0.0959618	0.0501309
chr1	29172899	29172998	410354	0	-	0.232323	[0,0.28]	chr1	49420	44	EXON_MRNA	EXON_MRNA:INTRON	SRSF4	ENSG00000116350.18	ENST00000373795.7:ENST00000691479.1:ENST00000634348.1:ENST00000466448.4:ENST00000605204.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	132	2	1.2601	1.86265	2.4652	0.0537324	0.00587222	0.180803	0.0668557
chr10	28575409	28575509	4414228	0	+	0.39	(0.378,0.408]	chr10	407148	370	INTRON	INTRON	WAC	ENSG00000095787.24	ENST00000680735.1:ENST00000375664.8:ENST00000428935.6:ENST00000651598.1:ENST00000628285.3:ENST00000681112.1:ENST00000679570.1:ENST00000375646.5:ENST00000354911.9:ENST00000347934.8:ENST00000420266.6:ENST00000651885.1:ENST00000651441.1:ENST00000679398.1:ENST00000424454.5:ENST00000442148.6:ENST00000448193.5:ENST00000414108.6:ENST00000679428.1:ENST00000439676.5:ENST00000345541.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	79	2	1.83778	1.8625349999999998	1.88729	0.0532327	0.00609624	0.162538	0.0706177
chr7	151514802	151514901	3674875	0	-	0.444444	(0.44,0.476]	chr7	341207	163	INTRON	INTRON	RHEB	ENSG00000106615.10	ENST00000262187.10:ENST00000472642.5:ENST00000478470.5:ENST00000496004.5:ENST00000470370.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	20	173	2	1.72036	1.862525	2.00469	0.00382241	0.00270804	0.0562562	0.0467523
chr2	69940267	69940366	805765	0	+	0.393939	(0.378,0.408]	chr2	89939	21	UTR3	UTR3:EXON_MRNA:INTRON	MXD1	ENSG00000059728.11	ENST00000540449.5:ENST00000264444.7:ENST00000465446.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	55	2	1.66594	1.862455	2.05897	0.0339294	0.0320222	0.144995	0.134508
chr2	38600503	38600599	1099756	0	-	0.447917	(0.44,0.476]	chr2	117962	6	INTRON	INTRON	HNRNPLL	ENSG00000143889.16	ENST00000449105.8:ENST00000409636.5:ENST00000358367.8:ENST00000608859.5:ENST00000378915.7:ENST00000409328.5:ENST00000410076.5:ENST00000498516.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	81	2	1.82106	1.8624049999999999	1.90375	0.0156406	0.0124107	0.101393	0.0973643
chr9	94455154	94455251	4162979	0	+	0.391753	(0.378,0.408]	chr9	379533	7	INTRON	INTRON	MFSD14B	ENSG00000148110.17	ENST00000375344.8	protein_coding	protein_coding	protein_coding	protein_coding	5	48	2	1.8374	1.862345	1.88729	0.0532327	0.0299228	0.162538	0.142135
chr6	43556944	43557040	3097136	0	-	0.427083	(0.408,0.44]	chr6	290064	6	INTRON	INTRON	XPO5	ENSG00000124571.18	ENST00000265351.12:ENST00000496341.6:ENST00000424378.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	54	2	1.44993	1.862285	2.27464	0.0638951	0.0158016	0.177824	0.109464
chr1	8773020	8773120	373338	0	-	0.31	(0.28,0.32]	chr1	43549	193	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000656437.1:ENST00000659924.1	protein_coding	protein_coding	protein_coding	protein_coding	5	59	2	1.71442	1.862155	2.00989	0.0454351	0.0427801	0.164236	0.148082
chr18	1311036	1311136	6941289	0	-	0.31	(0.28,0.32]	chr18	686577	69	INTRON	INTRON	LINC00470	ENSG00000132204.14	ENST00000657423.1:ENST00000657618.1:ENST00000584090.5:ENST00000660947.1:ENST00000669242.1:ENST00000660475.1:ENST00000653775.1:ENST00000661931.1:ENST00000412816.7:ENST00000577867.5:ENST00000584492.5:ENST00000667416.1:ENST00000661852.1:ENST00000657919.1:ENST00000661646.1:ENST00000667776.1:ENST00000654559.1:ENST00000661233.1:ENST00000653213.1:ENST00000659094.1:ENST00000660964.1:ENST00000577403.6:ENST00000660358.1:ENST00000669153.1:ENST00000657121.1:ENST00000655957.1:ENST00000659289.1:ENST00000665133.1:ENST00000671558.1:ENST00000666542.1:ENST00000663512.1:ENST00000582862.6:ENST00000578835.5:ENST00000669312.1:ENST00000581430.5:ENST00000581212.1:ENST00000658090.1	lncRNA	lncRNA	lncRNA	lncRNA	5	59	2	1.71442	1.862155	2.00989	0.0454351	0.0427801	0.164236	0.148082
chr4	163519794	163519887	2078416	0	+	0.333333	(0.32,0.35]	chr4	205429	4	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	TMA16	ENSG00000198498.10	ENST00000513134.5:ENST00000358572.10	protein_coding	protein_coding	protein_coding	protein_coding	7	76	2	1.60297	1.86209	2.12121	0.0647328	0.00650424	0.179192	0.0735144
chr6	149732135	149732235	3246823	0	-	0.41	(0.408,0.44]	chr6	301676	4	SS3_PROX	SS3_PROX:INTRON	NUP43	ENSG00000120253.14	ENST00000340413.7:ENST00000367404.8:ENST00000403890.7:ENST00000367402.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	56	2	1.74108	1.86209	1.9831	0.0424099	0.018491	0.148082	0.116694
chr8	129471362	129471462	4059988	0	-	0.41	(0.408,0.44]	chr8	369602	141	INTRON	INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1:ENST00000676273.1:ENST00000667643.1:ENST00000668791.1:ENST00000663716.1:ENST00000663572.1:ENST00000676148.1:ENST00000667962.1:ENST00000674877.1:ENST00000675316.1:ENST00000674656.1:ENST00000446592.7:ENST00000667341.1:ENST00000675186.1:ENST00000652971.1:ENST00000661447.1:ENST00000674863.1:ENST00000675498.1:ENST00000675527.1:ENST00000676108.1:ENST00000657647.1:ENST00000675589.1:ENST00000675913.1:ENST00000675109.1:ENST00000671632.1:ENST00000671311.1:ENST00000676099.1:ENST00000660652.1:ENST00000675522.1:ENST00000675183.1:ENST00000658861.1:ENST00000663991.1:ENST00000675044.1:ENST00000675435.1:ENST00000674639.1:ENST00000676069.1:ENST00000675532.1:ENST00000674762.1:ENST00000523151.6:ENST00000675948.1:ENST00000665364.1:ENST00000657251.1:ENST00000675166.1:ENST00000674883.1:ENST00000675867.1:ENST00000674580.1:ENST00000675393.1:ENST00000520048.1:ENST00000674906.1:ENST00000676030.1:ENST00000670588.1:ENST00000675072.1:ENST00000664936.1:ENST00000652914.1:ENST00000657069.1	lncRNA	lncRNA	lncRNA	lncRNA	6	56	2	1.74108	1.86209	1.9831	0.0424099	0.018491	0.148082	0.116694
chr19	28498844	28498944	7166083	0	-	0.32	(0.28,0.32]	chr19	724189	306	INTRON	INTRON	ENSG00000283403:ENSG00000267243	ENSG00000283403.1:ENSG00000267243.6	ENST00000592347.5:ENST00000593065.5	lncRNA	lncRNA	lncRNA	lncRNA	16	178	2	1.62435	1.8620700000000001	2.09979	0.0100706	0.00472009	0.0883451	0.0600445
chr18	73237617	73237716	6988349	0	-	0.333333	(0.32,0.35]	chr18	691704	365	INTRON	INTRON	LINC02864	ENSG00000263711.6	ENST00000584544.5:ENST00000581011.5:ENST00000581862.6:ENST00000669547.1:ENST00000661525.1:ENST00000583405.5	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	5	54	2	1.78201	1.862015	1.94202	0.0486128	0.0365003	0.153946	0.153759
chr6	44128066	44128166	2872335	0	+	0.64	(0.57,1]	chr6	272383	2	SS5_PROX	SS5_PROX:INTRON	TMEM63B	ENSG00000137216.19	ENST00000259746.13:ENST00000323267.11:ENST00000532634.5:ENST00000534326.5:ENST00000525294.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	33	2	1.64415	1.8618549999999998	2.07956	0.0342575	0.013114	0.135558	0.0998629
chr2	189580541	189580623	1296580	0	-	0.426829	(0.408,0.44]	chr2	135734	2	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	SLC40A1	ENSG00000138449.11	ENST00000261024.7:ENST00000427241.5:ENST00000479598.5:ENST00000418714.1:ENST00000455320.5:ENST00000440626.1:ENST00000427419.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	54	2	1.84301	1.861815	1.88062	0.0534548	0.0174311	0.162935	0.112689
chr22	21613186	21613282	7482160	0	+	0.53125	(0.515,0.57]	chr22	763244	18	INTRON	INTRON	UBE2L3	ENSG00000185651.16	ENST00000458578.6:ENST00000545681.2:ENST00000696046.1:ENST00000342192.9:ENST00000496722.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	69	2	1.82142	1.8617599999999999	1.9021	0.0191173	0.00848696	0.108861	0.083161
chr7	74175234	74175331	3332232	0	+	0.319588	(0.28,0.32]	chr7	310021	4	INTRON	INTRON	EIF4H	ENSG00000106682.16	ENST00000678438.1:ENST00000489484.5:ENST00000677998.1:ENST00000495187.2:ENST00000265753.13:ENST00000353999.6:ENST00000677570.1:ENST00000677681.1:ENST00000678815.1:ENST00000679266.1:ENST00000679287.1:ENST00000479338.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	87	2	1.38578	1.861745	2.33771	0.0537519	0.0142701	0.163832	0.103838
chr1	26698539	26698639	51196	0	+	0.39	(0.378,0.408]	chr1	6542	6	INTRON	INTRON	ARID1A	ENSG00000117713.21	ENST00000430799.7:ENST00000324856.13:ENST00000637465.1:ENST00000457599.6	protein_coding	protein_coding	protein_coding	protein_coding	6	58	2	1.77782	1.861705	1.94559	0.0388177	0.0211434	0.143072	0.122929
chr7	65981650	65981750	3538227	0	-	0.35	(0.32,0.35]	chr7	330042	4	SS5_PROX	SS5_PROX:INTRON	GUSB	ENSG00000169919.17	ENST00000304895.9:ENST00000430730.5:ENST00000447929.5:ENST00000421103.5:ENST00000475316.5:ENST00000476486.5:ENST00000446111.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	65	2	1.64353	1.8616899999999998	2.07985	0.0398512	0.0303092	0.143072	0.143025
chr6	119224371	119224471	3204559	0	-	0.44	(0.408,0.44]	chr6	298302	191	INTRON	INTRON	MAN1A1	ENSG00000111885.7	ENST00000368468.4	protein_coding	protein_coding	protein_coding	protein_coding	6	57	2	1.75791	1.861625	1.96534	0.0378795	0.0216499	0.157034	0.11491
chr1	19209373	19209472	386834	0	-	0.383838	(0.378,0.408]	chr1	46143	72	INTRON	INTRON	UBR4	ENSG00000127481.15	ENST00000375254.8	protein_coding	protein_coding	protein_coding	protein_coding	9	72	2	1.28658	1.8615750000000002	2.43657	0.0499541	0.0106733	0.17488	0.0861859
chr3	155853193	155853293	1844337	0	-	0.39	(0.378,0.408]	chr3	185567	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	SLC33A1	ENSG00000169359.16	ENST00000643144.2:ENST00000359479.7:ENST00000468581.2:ENST00000646424.1:ENST00000644094.1:ENST00000642438.1:ENST00000644855.1:ENST00000475842.5:ENST00000460729.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	72	2	1.28658	1.8615750000000002	2.43657	0.0499541	0.0106733	0.17488	0.0861859
chr20	45078537	45078636	7279591	0	+	0.393939	(0.378,0.408]	chr20	740107	35	UTR3	UTR3:EXON_MRNA	STK4	ENSG00000101109.12	ENST00000499879.6:ENST00000372806.8	protein_coding	protein_coding	protein_coding	protein_coding	11	105	2	1.48285	1.861575	2.2403	0.044825	0.00125943	0.149888	0.03295
chr16	96273	96371	6425331	0	-	0.540816	(0.515,0.57]	chr16	617328	26	INTRON	INTRON	NPRL3	ENSG00000103148.17	ENST00000611875.5:ENST00000622194.4:ENST00000621703.4:ENST00000399953.7:ENST00000464069.1:ENST00000473674.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	55	2	1.77795	1.86144	1.94493	0.0222234	0.0204583	0.122204	0.116128
chr8	55824896	55824993	3754318	0	+	0.381443	(0.378,0.408]	chr8	349245	3	UTR3	UTR3:EXON_MRNA	TGS1	ENSG00000137574.11	ENST00000260129.6:ENST00000523948.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	76	2	1.67662	1.8614199999999999	2.04622	0.0243251	0.0149927	0.12011	0.107704
chr2	96626625	96626724	1181074	0	-	0.343434	(0.32,0.35]	chr2	126496	65	INTRON	INTRON	KANSL3	ENSG00000114982.19	ENST00000354204.10:ENST00000431828.6:ENST00000487070.5:ENST00000447759.5:ENST00000420155.5:ENST00000670907.1:ENST00000666923.1:ENST00000597150.5:ENST00000444759.5:ENST00000452268.5:ENST00000425656.5:ENST00000448075.1:ENST00000451819.5:ENST00000416138.1:ENST00000418735.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	10	98	2	1.56183	1.86141	2.16099	0.0202633	0.0127227	0.121406	0.0926667
chr17	35826805	35826904	6601269	0	+	0.414141	(0.408,0.44]	chr17	642439	10	INTRON	INTRON	TAF15	ENSG00000270647.7	ENST00000605844.6:ENST00000603777.6:ENST00000604694.2:ENST00000689923.1:ENST00000603393.6:ENST00000685897.1:ENST00000603427.6:ENST00000604879.6:ENST00000604841.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	64	2	1.84301	1.86139	1.87977	0.0282738	0.0174311	0.125825	0.112689
chr16	53080266	53080366	6350971	0	+	0.48	(0.476,0.515]	chr16	609666	248	INTRON	INTRON	CHD9	ENSG00000177200.18	ENST00000447540.6:ENST00000566029.5:ENST00000615216.4:ENST00000561869.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	54	2	1.58972	1.86138	2.13304	0.0427022	0.024866	0.148082	0.132101
chr6	99410241	99410341	3165989	0	-	0.31	(0.28,0.32]	chr6	295310	10	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	PNISR	ENSG00000132424.17	ENST00000681615.1:ENST00000369239.10:ENST00000647811.1:ENST00000481229.2:ENST00000679525.1:ENST00000681611.1:ENST00000438806.5:ENST00000478777.5:ENST00000463021.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	77	2	1.75863	1.861195	1.96376	0.0480066	0.0177071	0.153019	0.11319
chr4	110187355	110187455	2227622	0	-	0.34	(0.32,0.35]	chr4	218024	814	INTRON	INTRON	ELOVL6	ENSG00000170522.10	ENST00000394607.7:ENST00000302274.8:ENST00000514184.5:ENST00000506625.5:ENST00000506461.1:ENST00000503885.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	16	168	2	1.78588	1.861135	1.93639	0.00894349	0.00333641	0.0799922	0.0528877
chr6	107951586	107951686	3182781	0	-	0.33	(0.32,0.35]	chr6	296463	217	INTRON	INTRON	SEC63	ENSG00000025796.14	ENST00000369002.9:ENST00000429168.1:ENST00000484803.5:ENST00000446496.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	54	2	1.83315	1.86112	1.88909	0.0553737	0.0313348	0.165463	0.144381
chr10	96130478	96130569	4502196	0	+	0.758242	(0.57,1]	chr10	414459	3	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	ZNF518A	ENSG00000177853.15	ENST00000614149.2:ENST00000488700.5:ENST00000624776.4:ENST00000539666.5:ENST00000563195.1:ENST00000316045.10	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	31	2	1.58776	1.8611050000000002	2.13445	0.0295652	0.0241482	0.142135	0.12011
chr10	21620987	21621087	4405289	0	+	0.54	(0.515,0.57]	chr10	406483	34	INTRON	INTRON	MLLT10	ENSG00000078403.17	ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000651298.1:ENST00000377059.7:ENST00000652258.1:ENST00000651382.1:ENST00000438473.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	56	2	1.81744	1.861035	1.90463	0.031028	0.0141753	0.143457	0.0959618
chr1	93088696	93088795	162633	0	+	0.494949	(0.476,0.515]	chr1	17567	73	INTRON	INTRON	MTF2	ENSG00000143033.18	ENST00000540243.5:ENST00000545708.5:ENST00000474314.6:ENST00000370298.9:ENST00000473430.5:ENST00000494963.5:ENST00000471953.5:ENST00000370303.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	65	2	1.86014	1.86098	1.86182	0.0277606	0.0178986	0.137011	0.106365
chr10	68332834	68332933	4440766	0	+	0.585859	(0.57,1]	chr10	409480	2	INTRON	INTRON	HNRNPH3	ENSG00000096746.18	ENST00000469172.5:ENST00000461310.5:ENST00000265866.12:ENST00000480987.5:ENST00000486854.5:ENST00000467249.1:ENST00000354695.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	43	2	1.26112	1.860975	2.46083	0.0533929	0.00255312	0.162935	0.0466386
chr10	42811205	42811305	4428319	0	+	0.46	(0.44,0.476]	chr10	408133	86	INTRON	INTRON	BMS1	ENSG00000165733.8	ENST00000374518.6	protein_coding	protein_coding	protein_coding	protein_coding	5	47	2	1.71574	1.8609149999999999	2.00609	0.045256	0.0360127	0.152355	0.149888
chr1	23331619	23331719	399461	0	-	0.49	(0.476,0.515]	chr1	47865	75	INTRON	INTRON	HNRNPR	ENSG00000125944.21	ENST00000478691.5:ENST00000302271.11:ENST00000374616.7:ENST00000374612.5:ENST00000675048.1:ENST00000606561.5:ENST00000427764.3:ENST00000463552.5:ENST00000470941.5:ENST00000476451.2	protein_coding	protein_coding	protein_coding	protein_coding	9	77	2	1.30826	1.86077	2.41328	0.0587053	0.00355364	0.167915	0.0547657
chr17	20870378	20870478	6576082	0	+	0.51	(0.476,0.515]	chr17	639372	13	INTRON	INTRON	CCDC144NL-AS1	ENSG00000233098.10	ENST00000577537.5:ENST00000692759.1:ENST00000443508.8:ENST00000692309.1:ENST00000439794.6:ENST00000417232.6:ENST00000583962.2:ENST00000582324.5:ENST00000577860.5	lncRNA	lncRNA	lncRNA	lncRNA	29	253	2	1.85935	1.860725	1.8621	0.0019805	0.00122963	0.0404322	0.0325986
chr7	6379214	6379314	3273067	0	+	0.42	(0.408,0.44]	chr7	304311	29	INTRON	INTRON	RAC1	ENSG00000136238.19	ENST00000348035.9:ENST00000356142.4:ENST00000696666.1:ENST00000488373.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	64	2	1.79818	1.860685	1.92319	0.0247322	0.020428	0.122109	0.12011
chr6	31836617	31836676	2843851	0	+	0.254237	[0,0.28]	chr6	267913	1	SS5_PROX	SS5_PROX:INTRON	SNHG32	ENSG00000204387.14	ENST00000375640.7:ENST00000375641.6:ENST00000375635.6:ENST00000375638.7:ENST00000648677.1:ENST00000375642.6:ENST00000614363.4:ENST00000395789.5:ENST00000375633.5	lncRNA	lncRNA	lncRNA	lncRNA	56	718	2	1.57664	1.860515	2.14439	0.00762202	4.08703e-4	0.075117	0.0181306
chr11	111740126	111740224	5041476	0	-	0.367347	(0.35,0.378]	chr11	474777	24	UTR3	UTR3:EXON_MRNA:INTRON	PPP2R1B	ENSG00000137713.16	ENST00000311129.9:ENST00000426998.6:ENST00000527614.6	protein_coding	protein_coding	protein_coding	protein_coding	5	51	2	1.6122	1.860395	2.10859	0.0616849	0.0272722	0.174021	0.136494
chr16	24766647	24766747	6329585	0	+	0.38	(0.378,0.408]	chr16	605945	79	INTRON	INTRON	TNRC6A	ENSG00000090905.19	ENST00000395799.8:ENST00000315183.11:ENST00000562829.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	14	125	2	1.74499	1.8603800000000001	1.97577	0.00823929	0.00577956	0.0773252	0.0684334
chr6	35912668	35912768	3088742	0	-	0.41	(0.408,0.44]	chr6	288898	73	INTRON	INTRON	SRPK1	ENSG00000096063.16	ENST00000373825.7:ENST00000423325.6:ENST00000346162.10:ENST00000361690.7:ENST00000510290.5:ENST00000508473.5:ENST00000512445.5:ENST00000513367.1:ENST00000507909.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	65	2	1.73753	1.860315	1.9831	0.0275537	0.018491	0.123904	0.116694
chr9	37776838	37776935	4251977	0	-	0.515464	(0.515,0.57]	chr9	391600	8	EXON_LNCRNA	EXON_LNCRNA:INTRON	EXOSC3:ENSG00000289295	ENSG00000107371.14:ENSG00000289295.1	ENST00000678095.1:ENST00000679059.1:ENST00000465229.5:ENST00000686288.1	protein_coding	nonsense_mediated_decay	protein_coding:lncRNA	nonsense_mediated_decay:lncRNA	8	62	2	1.77795	1.860215	1.94248	0.0222234	0.0115668	0.116128	0.0962115
chr18	36026775	36026875	6963129	0	-	0.24	[0,0.28]	chr18	689047	12	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	RPRD1A	ENSG00000141425.18	ENST00000399022.9:ENST00000590898.5:ENST00000357384.8:ENST00000588737.5:ENST00000585953.5:ENST00000589050.1:ENST00000591994.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:non_stop_decay	22	278	2	1.65229	1.8601900000000002	2.06809	0.00684635	0.00433689	0.0748337	0.0579868
chr1	32328372	32328469	65087	0	+	0.587629	(0.57,1]	chr1	8345	3	INTRON	INTRON	HDAC1	ENSG00000116478.12	ENST00000373548.8:ENST00000428704.1:ENST00000490081.5:ENST00000482310.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	16	71	2	1.21036	1.8601	2.50984	0.0407771	1.72558e-4	0.1451	0.0113954
chr10	71822800	71822898	4642546	0	-	0.397959	(0.378,0.408]	chr10	427136	4	INTRON	INTRON	PSAP	ENSG00000197746.15	ENST00000394936.8:ENST00000633965.1	protein_coding	protein_coding	protein_coding	protein_coding	10	94	2	1.58299	1.8600499999999998	2.13711	0.0329718	0.00329758	0.133816	0.0527031
chr21	34874761	34874861	7447132	0	-	0.4	(0.378,0.408]	chr21	759849	148	INTRON	INTRON	RUNX1	ENSG00000159216.19	ENST00000300305.7:ENST00000675419.1:ENST00000437180.5:ENST00000344691.8:ENST00000482318.5:ENST00000399240.5:ENST00000358356.9:ENST00000399237.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	94	2	1.76455	1.8599450000000002	1.95534	0.0180091	0.00731058	0.106756	0.076234
chr2	235623614	235623714	1042633	0	+	0.44	(0.408,0.44]	chr2	111222	987	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1:ENST00000402604.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	47	2	1.64062	1.859905	2.07919	0.0557275	0.0291499	0.165463	0.14147
chr7	139367298	139367398	3437662	0	+	0.18	[0,0.28]	chr7	320318	66	INTRON	INTRON	LUC7L2:FMC1-LUC7L2	ENSG00000146963.18:ENSG00000269955.2	ENST00000541170.7:ENST00000541515.3:ENST00000608368.5:ENST00000619796.4:ENST00000354926.9:ENST00000435096.1:ENST00000456182.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	114	2	1.61261	1.859895	2.10718	0.0243731	0.0187468	0.131317	0.108861
chr16	74653313	74653412	6525667	0	-	0.434343	(0.408,0.44]	chr16	631913	8	INTRON	INTRON	RFWD3	ENSG00000168411.14	ENST00000361070.9:ENST00000571750.5:ENST00000572337.5	protein_coding	protein_coding	protein_coding	protein_coding	7	59	2	1.40381	1.85973	2.31565	0.0521927	0.0154718	0.177259	0.100909
chr5	146245120	146245219	2514537	0	+	0.434343	(0.408,0.44]	chr5	240194	73	INTRON	INTRON	ENSG00000275740:RBM27	ENSG00000275740.1:ENSG00000091009.8	ENST00000506502.2:ENST00000265271.7	protein_coding	protein_coding	protein_coding	protein_coding	7	59	2	1.40381	1.85973	2.31565	0.0521927	0.0154718	0.177259	0.100909
chr15	90904750	90904839	6102141	0	+	0.47191	(0.44,0.476]	chr15	581085	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MAN2A2	ENSG00000196547.15	ENST00000558290.5:ENST00000558853.5:ENST00000559999.5:ENST00000560451.5:ENST00000558161.5:ENST00000559717.6:ENST00000559965.5:ENST00000560192.5:ENST00000360468.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	106	2	1.38395	1.859725	2.3355	0.0392605	0.00123661	0.143072	0.0326427
chr21	44863610	44863709	7469023	0	-	0.363636	(0.35,0.378]	chr21	761242	18	INTRON	INTRON	PTTG1IP	ENSG00000183255.12	ENST00000397887.7:ENST00000445724.3:ENST00000330938.8:ENST00000474737.5:ENST00000494690.5:ENST00000480234.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	11	108	2	1.46754	1.85972	2.2519	0.0383604	0.0020199	0.142063	0.0416115
chr5	75338022	75338104	2390839	0	+	0.341463	(0.32,0.35]	chr5	230892	4	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HMGCR	ENSG00000113161.17	ENST00000511206.5:ENST00000679456.1:ENST00000680160.1:ENST00000287936.9:ENST00000681567.1:ENST00000343975.9:ENST00000509431.1:ENST00000680940.1:ENST00000681271.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	15	161	2	1.23789	1.85969	2.48149	0.058889	2.7205e-4	0.167915	0.0146612
chr19	36234861	36234960	7057624	0	+	0.414141	(0.408,0.44]	chr19	704670	57	INTRON	INTRON	ZNF146	ENSG00000167635.12	ENST00000456324.5:ENST00000591063.5:ENST00000443387.3:ENST00000586094.5:ENST00000587285.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	56	2	1.58763	1.8596	2.13157	0.0639217	0.0109031	0.177824	0.0923273
chr7	99559421	99559521	3362696	0	+	0.63	(0.57,1]	chr7	314119	4	SS5_PROX	SS5_PROX:INTRON	ZNF655	ENSG00000197343.11	ENST00000320583.9:ENST00000626122.2:ENST00000467680.5:ENST00000357864.6:ENST00000489320.1:ENST00000452314.5:ENST00000416144.5:ENST00000454654.5:ENST00000412636.5:ENST00000252713.9:ENST00000449244.5:ENST00000423973.5:ENST00000493947.5:ENST00000425063.5:ENST00000493277.5:ENST00000422422.5:ENST00000488751.1:ENST00000422164.5:ENST00000427931.5:ENST00000422647.5:ENST00000424881.5:ENST00000440391.5:ENST00000394163.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	29	2	1.79978	1.859575	1.91937	0.0468438	0.0199509	0.167716	0.109608
chr2	15537542	15537640	1072925	0	-	0.44898	(0.44,0.476]	chr2	114453	6	INTRON	INTRON	NBAS	ENSG00000151779.13	ENST00000281513.10	protein_coding	protein_coding	protein_coding	protein_coding	11	96	2	1.84951	1.85955	1.86959	0.0176166	0.00567535	0.105146	0.0678837
chr7	130088198	130088297	3413771	0	+	0.353535	(0.35,0.378]	chr7	319098	170	INTRON	INTRON	KLHDC10	ENSG00000128607.14	ENST00000335420.10:ENST00000463413.1:ENST00000468226.1	protein_coding	protein_coding	protein_coding	protein_coding	16	151	2	1.75996	1.8594499999999998	1.95894	0.00660342	0.00468754	0.0703181	0.0631419
chr1	89831014	89831113	159623	0	+	0.525253	(0.515,0.57]	chr1	17270	85	INTRON	INTRON	LRRC8D	ENSG00000171492.14	ENST00000525774.5:ENST00000337338.9:ENST00000394593.7	protein_coding	protein_coding	protein_coding	protein_coding	6	45	2	1.56838	1.859445	2.15051	0.0424458	0.0238113	0.161763	0.118889
chr13	95176309	95176408	5638613	0	-	0.545455	(0.515,0.57]	chr13	537099	53	INTRON	INTRON	ABCC4	ENSG00000125257.16	ENST00000645237.2:ENST00000643051.1:ENST00000643842.1:ENST00000646439.1:ENST00000643816.1:ENST00000536256.3:ENST00000643556.1:ENST00000629385.1:ENST00000642524.1:ENST00000645532.1:ENST00000644471.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	45	2	1.56838	1.859445	2.15051	0.0424458	0.0238113	0.161763	0.118889
chr1	54280737	54280837	462499	0	-	0.55	(0.515,0.57]	chr1	55761	222	INTRON	INTRON	SSBP3	ENSG00000157216.16	ENST00000610401.5:ENST00000357475.9:ENST00000371319.8:ENST00000417664.7:ENST00000533946.6:ENST00000326956.12:ENST00000371320.8:ENST00000426150.5:ENST00000533209.5:ENST00000525990.1:ENST00000528787.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	45	2	1.5060500000000001	1.85939	2.21273	0.0511812	0.0196151	0.176696	0.109486
chr19	18306990	18307085	7151981	0	-	0.568421	(0.515,0.57]	chr19	722755	9	UTR3	UTR3:EXON_MRNA	LSM4	ENSG00000130520.11	ENST00000593829.6:ENST00000252816.10:ENST00000600289.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	18	128	2	1.39844	1.859365	2.32029	0.0156505	8.50791e-4	0.109464	0.0267428
chr1	241851086	241851174	344399	0	+	0.397727	(0.378,0.408]	chr1	40091	1	INTRON	INTRON	EXO1	ENSG00000174371.17	ENST00000366548.8:ENST00000423131.5:ENST00000523590.5:ENST00000348581.9:ENST00000518483.5:ENST00000437497.5:ENST00000450748.1:ENST00000493702.5:ENST00000469419.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	112	2	1.51434	1.85933	2.20432	0.015731	0.00529064	0.109464	0.0636343
chr10	21700212	21700311	4406092	0	+	0.282828	(0.28,0.32]	chr10	406537	32	INTRON	INTRON	MLLT10	ENSG00000078403.17	ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000651298.1:ENST00000377059.7:ENST00000651382.1:ENST00000438473.6:ENST00000420525.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	49	2	1.81582	1.859225	1.90263	0.068122	0.0503272	0.184298	0.17488
chr21	14524690	14524790	7427988	0	-	0.3	(0.28,0.32]	chr21	757769	9	INTRON	INTRON	SAMSN1	ENSG00000155307.19	ENST00000647101.1:ENST00000644288.1:ENST00000400564.5:ENST00000400566.6:ENST00000285670.7:ENST00000619120.4:ENST00000493640.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	49	2	1.81582	1.859225	1.90263	0.068122	0.0503272	0.184298	0.17488
chr22	21571075	21571175	7481738	0	+	0.31	(0.28,0.32]	chr22	763232	23	INTRON	INTRON	UBE2L3	ENSG00000185651.16	ENST00000458578.6:ENST00000545681.2:ENST00000696046.1:ENST00000342192.9:ENST00000496722.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	49	2	1.81582	1.859225	1.90263	0.068122	0.0503272	0.184298	0.17488
chr2	182925601	182925701	1284863	0	-	0.35	(0.32,0.35]	chr2	135263	166	UTR3	UTR3:EXON_MRNA	NCKAP1	ENSG00000061676.15	ENST00000361354.9:ENST00000360982.2:ENST00000477988.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	12	125	2	1.70947	1.85914	2.00881	0.0328375	0.00235992	0.133816	0.0445991
chr5	65579016	65579109	2368793	0	+	0.473118	(0.44,0.476]	chr5	228257	2	SS3_PROX	SS3_PROX:INTRON	PPWD1	ENSG00000113593.12	ENST00000535264.5:ENST00000538977.5:ENST00000261308.10:ENST00000510930.5:ENST00000511908.5:ENST00000514172.1:ENST00000511334.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	81	2	1.63371	1.8591199999999999	2.08453	0.0271664	0.00689	0.123904	0.0750118
chrX	66017550	66017649	7672628	0	+	0.474747	(0.44,0.476]	chrX	785238	12	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	MIR223HG	ENSG00000274536.8	ENST00000618234.5:ENST00000621933.2:ENST00000691658.1:ENST00000658749.1	lncRNA	lncRNA	lncRNA	lncRNA	9	81	2	1.63371	1.8591199999999999	2.08453	0.0271664	0.00689	0.123904	0.0750118
chr3	140966779	140966856	1523205	0	+	0.220779	[0,0.28]	chr3	158676	1	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:SS5_PROX:INTRON	SLC25A36	ENSG00000114120.14	ENST00000446041.6:ENST00000324194.12:ENST00000648615.1:ENST00000393015.8:ENST00000502594.5:ENST00000453248.6:ENST00000631654.1:ENST00000513887.5:ENST00000512023.5:ENST00000512506.5:ENST00000502866.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	105	2	1.5825	1.8591	2.1357	0.0338175	0.0219177	0.134476	0.123836
chr3	126455564	126455664	1811257	0	-	0.43	(0.408,0.44]	chr3	181908	123	INTRON	INTRON	ZXDC	ENSG00000070476.15	ENST00000389709.8:ENST00000515545.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	53	2	1.60344	1.858955	2.11447	0.0387506	0.0285207	0.160156	0.12666
chr2	15528943	15529043	1072838	0	-	0.43	(0.408,0.44]	chr2	114441	172	INTRON	INTRON	NBAS	ENSG00000151779.13	ENST00000281513.10	protein_coding	protein_coding	protein_coding	protein_coding	6	53	2	1.55035	1.858905	2.16746	0.0455214	0.024436	0.164236	0.12011
chr3	49764302	49764402	1694661	0	-	0.44	(0.408,0.44]	chr3	173818	155	INTRON	INTRON	IP6K1	ENSG00000176095.12	ENST00000321599.9:ENST00000395238.5:ENST00000613416.4:ENST00000468463.5:ENST00000460540.1:ENST00000498149.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	53	2	1.55035	1.858905	2.16746	0.0455214	0.024436	0.164236	0.12011
chr6	31802581	31802680	3079890	0	-	0.414141	(0.408,0.44]	chr6	287264	37	INTRON	INTRON	LSM2	ENSG00000204392.11	ENST00000375661.6:ENST00000477182.5:ENST00000470086.5:ENST00000470083.5:ENST00000493387.5:ENST00000491421.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	53	2	1.55035	1.858905	2.16746	0.0455214	0.024436	0.164236	0.12011
chr2	134944902	134944998	872504	0	+	0.395833	(0.378,0.408]	chr2	97683	19	INTRON	INTRON	CCNT2	ENSG00000082258.13	ENST00000419781.5:ENST00000446247.5:ENST00000264157.10:ENST00000452839.5:ENST00000295238.10:ENST00000417175.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	55	2	1.71374	1.85886	2.00398	0.0393906	0.0274158	0.143072	0.136498
chr4	24541448	24541529	2118572	0	-	0.382716	(0.378,0.408]	chr4	209213	1	SS5_PROX	SS5_PROX:INTRON	DHX15	ENSG00000109606.13	ENST00000336812.5:ENST00000503562.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	55	2	1.71374	1.85886	2.00398	0.0393906	0.0274158	0.143072	0.136498
chr6	136257024	136257124	3230767	0	-	0.4	(0.378,0.408]	chr6	300321	5	UTR3	UTR3:EXON_MRNA	BCLAF1	ENSG00000029363.17	ENST00000640069.1:ENST00000531224.6:ENST00000353331.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	55	2	1.71374	1.85886	2.00398	0.0393906	0.0274158	0.143072	0.136498
chr15	28601893	28601992	5988034	0	+	0.40404	(0.378,0.408]	chr15	569254	12	INTRON	INTRON	HERC2P9	ENSG00000206149.11	ENST00000689985.1:ENST00000688694.1:ENST00000529537.2:ENST00000529624.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	5	48	2	1.8252	1.858855	1.89251	0.0619563	0.0251428	0.174514	0.133404
chr6	7145301	7145401	2798740	0	+	0.4	(0.378,0.408]	chr6	263733	41	INTRON	INTRON	RREB1	ENSG00000124782.21	ENST00000379933.7:ENST00000491191.5:ENST00000471433.5:ENST00000379938.7:ENST00000467782.5:ENST00000349384.10:ENST00000334984.10:ENST00000475946.5:ENST00000483150.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	48	2	1.8252	1.858855	1.89251	0.0619563	0.0251428	0.174514	0.133404
chr6	161066200	161066299	3025240	0	+	0.393939	(0.378,0.408]	chr6	282325	159	INTRON	INTRON	MAP3K4	ENSG00000085511.20	ENST00000366919.6:ENST00000392142.9:ENST00000542952.5:ENST00000366920.6:ENST00000348824.11:ENST00000544041.5:ENST00000490904.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	48	2	1.8252	1.858855	1.89251	0.0619563	0.0251428	0.174514	0.133404
chr9	130760454	130760554	4214329	0	+	0.37	(0.35,0.378]	chr9	386427	456	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000393293.4	protein_coding	protein_coding	protein_coding	protein_coding	9	89	2	1.63291	1.8588050000000003	2.0847	0.0289396	0.00719316	0.1274	0.0756118
chr12	123604971	123605070	5243182	0	+	0.424242	(0.408,0.44]	chr12	498294	2	EXON_MRNA	EXON_MRNA:INTRON	DDX55	ENSG00000111364.16	ENST00000542286.5:ENST00000544429.5:ENST00000238146.9:ENST00000545042.1:ENST00000544738.5:ENST00000538744.5:ENST00000540763.5:ENST00000354291.8:ENST00000536079.5:ENST00000539934.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	111	2	1.85866	1.8587	1.85874	0.0106944	0.00680022	0.091856	0.071184
chr7	1436541	1436641	3462033	0	-	0.44	(0.408,0.44]	chr7	323656	4	SS5_PROX	SS5_PROX:INTRON	MICALL2	ENSG00000164877.19	ENST00000493998.1:ENST00000496184.1:ENST00000472100.5:ENST00000297508.8:ENST00000467783.1:ENST00000467394.5:ENST00000413446.5:ENST00000479007.5:ENST00000471899.5:ENST00000470807.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	64	2	1.4947	1.85869	2.22268	0.0566065	0.00770925	0.167352	0.0784002
chr15	57177362	57177462	6034709	0	+	0.51	(0.476,0.515]	chr15	574713	105	INTRON	INTRON	TCF12	ENSG00000140262.18	ENST00000438423.6:ENST00000267811.9:ENST00000333725.10:ENST00000560190.5:ENST00000559609.5:ENST00000557843.5:ENST00000557947.5:ENST00000561346.5:ENST00000559216.5:ENST00000560887.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	56	2	1.74317	1.8585950000000002	1.97402	0.0396373	0.0206778	0.161534	0.110999
chr19	3431330	3431429	7000276	0	+	0.383838	(0.378,0.408]	chr19	694183	58	INTRON	INTRON	NFIC	ENSG00000141905.19	ENST00000641145.1:ENST00000589123.5:ENST00000395111.7:ENST00000586919.5:ENST00000341919.7:ENST00000443272.3:ENST00000590282.5	protein_coding	protein_coding	protein_coding	protein_coding	5	48	2	1.65821	1.85859	2.05897	0.0506302	0.0339294	0.17547	0.134508
chrX	66016856	66016955	7672621	0	+	0.383838	(0.378,0.408]	chrX	785238	5	EXON_LNCRNA	EXON_LNCRNA:SS3_PROX:INTRON	MIR223HG	ENSG00000274536.8	ENST00000618234.5:ENST00000621933.2:ENST00000691658.1:ENST00000658749.1	lncRNA	lncRNA	lncRNA	lncRNA	5	48	2	1.65821	1.85859	2.05897	0.0506302	0.0339294	0.17547	0.134508
chr22	20580606	20580706	7480105	0	+	0.52	(0.515,0.57]	chr22	763027	50	INTRON	INTRON	MED15	ENSG00000099917.17	ENST00000433831.5:ENST00000292733.11:ENST00000263205.11:ENST00000406969.5:ENST00000382974.6:ENST00000492381.5:ENST00000478831.5:ENST00000489651.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	50	2	1.38719	1.85843	2.32967	0.0540435	0.0133671	0.181713	0.0946278
chr14	100297133	100297231	5968355	0	-	0.397959	(0.378,0.408]	chr14	567024	7	INTRON	INTRON	SLC25A29	ENSG00000197119.13	ENST00000359232.8:ENST00000392908.7:ENST00000554224.5:ENST00000556715.6:ENST00000554060.1:ENST00000556868.1:ENST00000553359.5:ENST00000556873.5:ENST00000553574.1:ENST00000555051.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	85	2	1.70653	1.858365	2.0102	0.0219966	0.00940766	0.115395	0.0861183
chr1	36247808	36247908	73165	0	+	0.33	(0.32,0.35]	chr1	9371	220	INTRON	INTRON	THRAP3	ENSG00000054118.15	ENST00000469141.6:ENST00000648638.1:ENST00000354618.10	protein_coding	protein_coding	protein_coding	protein_coding	5	54	2	1.83416	1.858355	1.88255	0.0631198	0.0269187	0.176946	0.135288
chr1	211822963	211823063	631330	0	-	0.33	(0.32,0.35]	chr1	74654	294	INTRON	INTRON	LPGAT1	ENSG00000123684.13	ENST00000366997.9:ENST00000366996.1	protein_coding	protein_coding	protein_coding	protein_coding	5	54	2	1.83416	1.858355	1.88255	0.0631198	0.0269187	0.176946	0.135288
chr1	246870884	246870983	681325	0	-	0.343434	(0.32,0.35]	chr1	79915	27	INTRON	INTRON	AHCTF1	ENSG00000153207.16	ENST00000648844.2:ENST00000326225.3:ENST00000366508.5:ENST00000470300.5:ENST00000483900.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	54	2	1.83416	1.858355	1.88255	0.0631198	0.0269187	0.176946	0.135288
chr7	132966419	132966519	3644727	0	-	0.35	(0.32,0.35]	chr7	338848	791	INTRON	INTRON	CHCHD3	ENSG00000106554.13	ENST00000262570.10:ENST00000448878.6:ENST00000496427.5:ENST00000423635.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	62	2	1.45026	1.85833	2.2664	0.0622478	0.0199969	0.194723	0.109608
chr8	119832106	119832199	4040061	0	-	0.419355	(0.408,0.44]	chr8	368410	5	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TAF2	ENSG00000064313.13	ENST00000378164.7:ENST00000685503.1:ENST00000690808.1:ENST00000692707.1:ENST00000685202.1:ENST00000688645.1:ENST00000685684.1:ENST00000689399.1:ENST00000685876.1:ENST00000689341.1:ENST00000691057.1:ENST00000686098.1:ENST00000690922.1:ENST00000685663.1:ENST00000692518.1:ENST00000688037.1:ENST00000691237.1:ENST00000684862.1:ENST00000685755.1:ENST00000691880.1:ENST00000523904.2:ENST00000689919.1:ENST00000685824.1:ENST00000685993.1:ENST00000692829.1:ENST00000692916.1:ENST00000686879.1:ENST00000685235.1:ENST00000690144.1:ENST00000689164.1:ENST00000691847.1:ENST00000688215.1:ENST00000690031.1:ENST00000689867.1:ENST00000689873.1:ENST00000521007.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	12	116	2	1.66945	1.858235	2.04702	0.0218479	0.00298054	0.123836	0.0489963
chr21	10337381	10337480	7427394	0	-	0.484848	(0.476,0.515]	chr21	757672	6	EXON_LNCRNA	EXON_LNCRNA:INTRON	ENSG00000277693	ENSG00000277693.2	ENST00000622592.1:ENST00000616952.1:ENST00000667012.1	lncRNA	lncRNA	lncRNA	lncRNA	5	46	2	1.58335	1.8581949999999998	2.13304	0.0640461	0.024866	0.177882	0.132101
chr5	154768979	154769079	2527134	0	+	0.48	(0.476,0.515]	chr5	241610	111	INTRON	INTRON	LARP1	ENSG00000155506.19	ENST00000687700.1:ENST00000336314.9:ENST00000690816.1:ENST00000518297.6:ENST00000517616.5:ENST00000518892.1:ENST00000521577.1:ENST00000519931.5:ENST00000524248.5:ENST00000685946.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	46	2	1.58335	1.8581949999999998	2.13304	0.0640461	0.024866	0.177882	0.132101
chr3	172046313	172046413	1559610	0	+	0.38	(0.378,0.408]	chr3	161523	53	INTRON	INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000421757.5:ENST00000469491.5:ENST00000336824.8:ENST00000423424.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	14	129	2	1.72469	1.8581699999999999	1.99165	0.0155	0.00222444	0.100909	0.0435144
chr4	67470731	67470830	2152747	0	-	0.343434	(0.32,0.35]	chr4	211903	21	UTR3	UTR3:EXON_MRNA	CENPC	ENSG00000145241.11	ENST00000273853.11	protein_coding	protein_coding	protein_coding	protein_coding	5	54	2	1.67393	1.85815	2.04237	0.0496128	0.0375542	0.174685	0.140222
chr7	101919908	101920007	3367391	0	+	0.606061	(0.57,1]	chr7	315225	33	INTRON	INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000497815.5:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000558469.5:ENST00000560541.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	33	2	1.62421	1.8581400000000001	2.09207	0.0376752	0.0121228	0.156361	0.090965
chr12	64649116	64649216	5155384	0	+	0.45	(0.44,0.476]	chr12	488093	376	INTRON	INTRON	RASSF3	ENSG00000153179.13	ENST00000637125.1:ENST00000542104.6:ENST00000283172.8:ENST00000336061.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	53	2	1.75023	1.858125	1.96602	0.0426807	0.0240995	0.148082	0.129929
chr6	109375379	109375476	3185842	0	-	0.43299	(0.408,0.44]	chr6	296664	27	INTRON	INTRON	CD164	ENSG00000135535.17	ENST00000310786.10:ENST00000413644.6:ENST00000504373.2:ENST00000324953.9:ENST00000275080.11:ENST00000499860.6:ENST00000512821.5:ENST00000506649.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	12	104	2	1.28292	1.8580649999999999	2.43321	0.0429534	0.0019051	0.162255	0.0394485
chr16	74585389	74585489	6525115	0	-	0.53	(0.515,0.57]	chr16	631842	222	INTRON	INTRON	GLG1	ENSG00000090863.12	ENST00000205061.9:ENST00000422840.7:ENST00000447066.6:ENST00000562090.5:ENST00000567951.5:ENST00000627032.2:ENST00000565260.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	49	2	1.60221	1.858025	2.11384	0.0581855	0.0118599	0.188704	0.0899583
chr3	194469437	194469537	1891025	0	-	0.28	[0,0.28]	chr3	189246	13	INTRON	INTRON	ATP13A3	ENSG00000133657.17	ENST00000687055.1:ENST00000645538.1:ENST00000645319.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	157	2	1.78389	1.8579750000000002	1.9320600000000001	0.014367	0.0104544	0.096781	0.0903528
chr1	61115934	61116034	127729	0	+	0.41	(0.408,0.44]	chr1	14775	37	EXON_MRNA	EXON_MRNA:INTRON	NFIA	ENSG00000162599.17	ENST00000371191.5:ENST00000664495.1:ENST00000476646.5:ENST00000407417.7:ENST00000479364.1:ENST00000371189.8:ENST00000670151.1:ENST00000664149.1:ENST00000662015.1:ENST00000403491.8:ENST00000371187.7:ENST00000485903.6:ENST00000371185.6:ENST00000371184.6:ENST00000603233.2:ENST00000496712.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	13	117	2	1.73272	1.857955	1.98319	0.0113502	0.0042785	0.0886611	0.0598356
chr3	172052239	172052339	1559670	0	+	0.53	(0.515,0.57]	chr3	161527	49	INTRON	INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000421757.5:ENST00000469491.5:ENST00000336824.8:ENST00000423424.5:ENST00000416957.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	46	2	1.84511	1.8579050000000001	1.8707	0.0523213	0.0167182	0.160182	0.110511
chr4	70925833	70925933	1970740	0	+	0.39	(0.378,0.408]	chr4	197571	229	INTRON	INTRON	MOB1B	ENSG00000173542.9	ENST00000502869.5:ENST00000509041.5:ENST00000309395.7:ENST00000396051.2:ENST00000511449.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	56	2	1.8252	1.85786	1.89052	0.0619563	0.0148147	0.174514	0.106702
chr1	235259464	235259561	663174	0	-	0.391753	(0.378,0.408]	chr1	78546	19	INTRON	INTRON	ARID4B	ENSG00000054267.22	ENST00000349213.7:ENST00000366603.6:ENST00000264183.9:ENST00000421364.5:ENST00000491632.5:ENST00000418304.1:ENST00000466653.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	65	2	1.76032	1.85783	1.95534	0.0721577	0.00731058	0.187433	0.076234
chr2	15506612	15506712	1072614	0	-	0.33	(0.32,0.35]	chr2	114435	20	INTRON	INTRON	NBAS	ENSG00000151779.13	ENST00000281513.10:ENST00000427792.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	63	2	1.83416	1.857785	1.88141	0.0631198	0.0161424	0.176946	0.109464
chr15	64511055	64511155	6044594	0	+	0.35	(0.32,0.35]	chr15	575696	81	INTRON	INTRON	ZNF609	ENSG00000180357.10	ENST00000326648.5:ENST00000558680.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	69	2	1.57911	1.857655	2.1362	0.0313129	0.0291083	0.144381	0.128029
chr9	123117795	123117895	4338942	0	-	0.34	(0.32,0.35]	chr9	398831	13	INTRON	INTRON	STRBP	ENSG00000165209.19	ENST00000530364.1:ENST00000478973.6:ENST00000471564.6	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	7	69	2	1.57911	1.857655	2.1362	0.0313129	0.0291083	0.144381	0.128029
chr22	21829936	21830036	7561009	0	-	0.33	(0.32,0.35]	chr22	773388	217	INTRON	INTRON	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	8	75	2	1.32932	1.85757	2.38582	0.0540385	0.0138529	0.181713	0.0953077
chr1	154977113	154977205	228517	0	+	0.434783	(0.408,0.44]	chr1	26571	10	INTRON	INTRON	CKS1B	ENSG00000173207.13	ENST00000368439.5:ENST00000308987.6:ENST00000368436.1:ENST00000477676.6:ENST00000474215.5:ENST00000473344.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	40	2	1.43792	1.85745	2.27698	0.062843	0.0583528	0.196433	0.167723
chr22	21689796	21689891	7482706	0	+	0.442105	(0.44,0.476]	chr22	763393	11	EXON_MRNA	EXON_MRNA:INTRON	PPIL2	ENSG00000100023.20	ENST00000679795.1:ENST00000679540.1:ENST00000679580.1:ENST00000681286.1:ENST00000680061.1:ENST00000681338.1:ENST00000681956.1:ENST00000679827.1:ENST00000679534.1:ENST00000679479.1:ENST00000680393.1:ENST00000680426.1:ENST00000335025.12:ENST00000498109.2:ENST00000398831.8:ENST00000681394.1:ENST00000679477.1:ENST00000626352.2:ENST00000417788.5:ENST00000681791.1:ENST00000679692.1:ENST00000680962.1:ENST00000679857.1:ENST00000680094.1:ENST00000680434.1:ENST00000680109.1:ENST00000406385.1:ENST00000681137.1:ENST00000680860.1:ENST00000680183.1:ENST00000446951.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	16	141	2	1.64909	1.8573849999999998	2.06568	0.0105848	0.00202294	0.0861859	0.0416117
chr3	48924517	48924617	1421506	0	+	0.48	(0.476,0.515]	chr3	149468	4	SS3_PROX	SS3_PROX:INTRON	ARIH2	ENSG00000177479.20	ENST00000478224.5:ENST00000430423.5:ENST00000452882.5:ENST00000498314.5:ENST00000474618.5:ENST00000492077.5:ENST00000449376.5:ENST00000490095.5:ENST00000463738.5:ENST00000356401.9:ENST00000495761.5:ENST00000483333.5:ENST00000482427.5:ENST00000488963.5:ENST00000420814.5:ENST00000486316.5:ENST00000449729.5:ENST00000433170.5:ENST00000474936.6:ENST00000466850.1:ENST00000484999.5:ENST00000470296.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	73	2	1.50151	1.85732	2.21313	0.054954	0.00401502	0.165463	0.0578059
chr6	17648305	17648405	3065614	0	-	0.52	(0.515,0.57]	chr6	284811	4	SS3_PROX	SS3_PROX:INTRON	NUP153	ENSG00000124789.12	ENST00000613258.4:ENST00000537253.5:ENST00000262077.3	protein_coding	protein_coding	protein_coding	protein_coding	11	76	2	1.51235	1.85724	2.20213	0.0176977	0.00853365	0.11319	0.0780043
chr7	105325465	105325565	3603271	0	-	0.26	[0,0.28]	chr7	336161	185	INTRON	INTRON	SRPK2	ENSG00000135250.17	ENST00000393651.8:ENST00000482897.5:ENST00000460391.5:ENST00000462282.5:ENST00000465112.5:ENST00000482862.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	14	184	2	1.30929	1.85711	2.40493	0.0559379	9.61017e-4	0.165463	0.0285129
chr19	18307179	18307274	7151983	0	-	0.473684	(0.44,0.476]	chr19	722755	11	UTR3	UTR3:EXON_MRNA	LSM4	ENSG00000130520.11	ENST00000593829.6:ENST00000252816.10:ENST00000600289.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	29	257	2	1.72225	1.857055	1.99186	0.0026073	0.00103235	0.0470772	0.029231300000000002
chr7	152051207	152051307	3449766	0	+	0.3	(0.28,0.32]	chr7	322435	231	INTRON	INTRON	GALNT11	ENSG00000178234.13	ENST00000430044.7:ENST00000482812.1:ENST00000431668.1:ENST00000446096.5:ENST00000447778.5:ENST00000423337.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	14	160	2	1.67855	1.85701	2.03547	0.0219528	0.0023449	0.115201	0.0443478
chr9	83701514	83701613	4273018	0	-	0.353535	(0.35,0.378]	chr9	392981	150	INTRON	INTRON	UBQLN1	ENSG00000135018.14	ENST00000376395.9:ENST00000257468.11:ENST00000529923.1	protein_coding	protein_coding	protein_coding	protein_coding	9	76	2	1.38936	1.857	2.32464	0.0361852	0.0159285	0.152746	0.101453
chr1	40204012	40204111	80395	0	+	0.474747	(0.44,0.476]	chr1	10431	10	INTRON	INTRON	RLF	ENSG00000117000.9	ENST00000372771.5	protein_coding	protein_coding	protein_coding	protein_coding	11	98	2	1.56865	1.8569849999999999	2.14532	0.0259267	0.00311081	0.121619	0.0512673
chr16	58542868	58542968	6495469	0	-	0.47	(0.44,0.476]	chr16	628470	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CNOT1	ENSG00000125107.19	ENST00000317147.10:ENST00000569240.5:ENST00000567188.5:ENST00000566240.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	98	2	1.75999	1.85691	1.95383	0.0176116	0.00489311	0.105143	0.0641889
chr1	12343151	12343251	29404	0	+	0.38	(0.378,0.408]	chr1	3608	1	SS5_PROX	SS5_PROX:INTRON	VPS13D	ENSG00000048707.15	ENST00000620676.6:ENST00000613099.4:ENST00000011700.10:ENST00000646917.1:ENST00000460333.5:ENST00000643711.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	106	2	1.70297	1.85684	2.01071	0.0111045	0.00860548	0.0876025	0.0837608
chr7	119746713	119746813	3628805	0	-	0.3	(0.28,0.32]	chr7	337319	414	INTRON	INTRON	LINC02476	ENSG00000225546.6	ENST00000660268.1:ENST00000431071.5	lncRNA	lncRNA	lncRNA	lncRNA	6	72	2	1.81152	1.8568099999999998	1.9021	0.034446	0.0304779	0.147767	0.130699
chr10	11596530	11596630	4555917	0	-	0.6	(0.57,1]	chr10	420461	228	INTRON	INTRON	USP6NL	ENSG00000148429.15	ENST00000609104.6:ENST00000606752.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	33	2	1.72406	1.856795	1.98953	0.0261443	0.0182848	0.122221	0.115629
chr4	78784708	78784808	1981468	0	+	0.39	(0.378,0.408]	chr4	198463	76	INTRON	INTRON	BMP2K	ENSG00000138756.19	ENST00000389010.7:ENST00000502613.3:ENST00000502871.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	18	149	2	1.35213	1.85677	2.36141	0.0187739	0.0015918	0.117676	0.0364566
chr16	58622781	58622881	6496312	0	-	0.42	(0.408,0.44]	chr16	628639	1	SS5_PROX	SS5_PROX:INTRON	CNOT1	ENSG00000125107.19	ENST00000317147.10:ENST00000569240.5:ENST00000567188.5:ENST00000441024.6:ENST00000565605.5:ENST00000564557.1:ENST00000569916.1:ENST00000565697.1:ENST00000569020.5:ENST00000568158.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	19	163	2	1.30936	1.856715	2.40407	0.0282525	3.2244e-4	0.125799	0.0159645
chr11	57781302	57781402	4793326	0	+	0.32	(0.28,0.32]	chr11	443717	168	INTRON	INTRON	ENSG00000288534:CTNND1	ENSG00000288534.1:ENSG00000198561.16	ENST00000673781.1:ENST00000673810.1:ENST00000674116.1:ENST00000674060.1:ENST00000524630.5:ENST00000529919.5:ENST00000533189.1:ENST00000682741.1:ENST00000358694.10:ENST00000361332.8:ENST00000361391.10:ENST00000361796.9:ENST00000415361.6:ENST00000426142.6:ENST00000428599.6:ENST00000525902.5:ENST00000526357.5:ENST00000526772.5:ENST00000527467.5:ENST00000528232.5:ENST00000528621.5:ENST00000529526.5:ENST00000529873.5:ENST00000529986.5:ENST00000530094.5:ENST00000530748.5:ENST00000531014.5:ENST00000532245.5:ENST00000532463.5:ENST00000532649.5:ENST00000532787.5:ENST00000532844.5:ENST00000533667.5:ENST00000534579.5:ENST00000399050.10:ENST00000526938.5:ENST00000531007.2:ENST00000674015.1:ENST00000673826.1:ENST00000673683.1:ENST00000674106.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	78	2	1.84658	1.85671	1.86684	0.0605813	0.0128582	0.171122	0.0990564
chr21	31701374	31701473	7437517	0	-	0.282828	(0.28,0.32]	chr21	758661	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SCAF4	ENSG00000156304.15	ENST00000286835.12:ENST00000399804.5:ENST00000434667.3:ENST00000467731.1:ENST00000485790.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	78	2	1.84658	1.85671	1.86684	0.0605813	0.0128582	0.171122	0.0990564
chr22	21860923	21861023	7561319	0	-	0.53	(0.515,0.57]	chr22	773388	527	INTRON	INTRON	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	6	45	2	1.44089	1.856635	2.27238	0.0617046	0.0161808	0.193423	0.101453
chr22	21425934	21426034	7481258	0	+	0.52	(0.515,0.57]	chr22	763209	48	INTRON	INTRON	HIC2	ENSG00000169635.10	ENST00000407464.7:ENST00000407598.2	protein_coding	protein_coding	protein_coding	protein_coding	13	98	2	1.62009	1.85656	2.09303	0.0153663	0.00230048	0.100447	0.0439974
chr1	15661820	15661919	33938	0	+	0.292929	(0.28,0.32]	chr1	4139	2	UTR3	UTR3:EXON_MRNA	DDI2:RSC1A1	ENSG00000197312.12:ENSG00000215695.2	ENST00000480945.6:ENST00000345034.2	protein_coding	protein_coding	protein_coding	protein_coding	6	71	2	1.68409	1.8565550000000002	2.02902	0.0548665	0.0174423	0.165463	0.11269
chr7	105381149	105381249	3603828	0	-	0.53	(0.515,0.57]	chr7	336161	742	INTRON	INTRON	SRPK2	ENSG00000135250.17	ENST00000393651.8:ENST00000482897.5:ENST00000460391.5:ENST00000462282.5:ENST00000465112.5:ENST00000482862.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	54	2	1.79385	1.8565049999999998	1.91916	0.0231902	0.0201222	0.121243	0.118148
chr1	12616795	12616881	379533	0	-	0.616279	(0.57,1]	chr1	44551	1	SS5_PROX	SS5_PROX:INTRON	DHRS3	ENSG00000162496.9	ENST00000616661.5	protein_coding	protein_coding	protein_coding	protein_coding	10	46	2	1.75814	1.85649	1.95484	0.0113205	0.0104317	0.0948452	0.0855102
chr8	43063305	43063403	3745918	0	+	0.397959	(0.378,0.408]	chr8	348521	38	INTRON	INTRON	FNTA	ENSG00000168522.13	ENST00000533559.5:ENST00000526755.5:ENST00000302279.8:ENST00000527153.5:ENST00000533383.5:ENST00000533998.5:ENST00000524546.5:ENST00000531266.5:ENST00000533368.1:ENST00000525699.5:ENST00000529687.5:ENST00000533336.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	87	2	1.64762	1.8564850000000002	2.06535	0.0159849	0.0136375	0.101785	0.101453
chr12	50445020	50445119	5136787	0	+	0.454545	(0.44,0.476]	chr12	484418	30	INTRON	INTRON	LARP4	ENSG00000161813.23	ENST00000293618.12:ENST00000429001.7:ENST00000398473.7:ENST00000522085.5:ENST00000518444.5:ENST00000518561.5:ENST00000347328.9:ENST00000520064.2:ENST00000521120.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	88	2	1.71119	1.85642	2.00165	0.0136438	0.0109867	0.101813	0.0873897
chr1	52849068	52849168	104969	0	+	0.5	(0.476,0.515]	chr1	13720	57	INTRON	INTRON	ZYG11A	ENSG00000203995.10	ENST00000371532.5:ENST00000612017.4:ENST00000371528.2	protein_coding	protein_coding	protein_coding	protein_coding	6	57	2	1.61586	1.856415	2.09697	0.0567093	0.0136924	0.185107	0.0949306
chr2	144503561	144503661	1241643	0	-	0.4	(0.378,0.408]	chr2	131741	54	INTRON	INTRON	ZEB2	ENSG00000169554.23	ENST00000636471.1:ENST00000627532.3:ENST00000638128.1:ENST00000637304.1:ENST00000636179.1:ENST00000419938.5:ENST00000409487.7:ENST00000636732.2:ENST00000636026.2:ENST00000675069.1:ENST00000689298.1:ENST00000539609.7:ENST00000558170.6:ENST00000303660.8:ENST00000427902.5:ENST00000637267.2:ENST00000392861.6:ENST00000431672.4:ENST00000409211.5:ENST00000465308.5:ENST00000434448.5:ENST00000472146.5:ENST00000461784.3:ENST00000476394.5:ENST00000637591.2:ENST00000479735.1:ENST00000453352.5:ENST00000435831.5:ENST00000444559.5:ENST00000630572.2:ENST00000484313.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	78	2	1.82032	1.856415	1.89251	0.0251428	0.01477	0.133404	0.0984422
chr5	142322390	142322490	2741219	0	-	0.49	(0.476,0.515]	chr5	258521	22	INTRON	INTRON	SPRY4	ENSG00000187678.10	ENST00000344120.4:ENST00000434127.3:ENST00000511815.1:ENST00000503582.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	57	2	1.61586	1.856415	2.09697	0.0567093	0.0136924	0.185107	0.0949306
chr6	43638333	43638431	2872029	0	+	0.377551	(0.35,0.378]	chr6	272333	13	INTRON	INTRON	MAD2L1BP	ENSG00000124688.14	ENST00000451025.6:ENST00000372171.5	protein_coding	protein_coding	protein_coding	protein_coding	7	64	2	1.47599	1.85625	2.23651	0.0425671	0.020879	0.162011	0.111766
chr1	32675368	32675467	66086	0	+	0.323232	(0.32,0.35]	chr1	8465	14	INTRON	INTRON	RBBP4	ENSG00000162521.19	ENST00000414241.7:ENST00000373493.10:ENST00000492348.6:ENST00000373485.5:ENST00000458695.6:ENST00000463378.5:ENST00000460669.5:ENST00000482190.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	65	2	1.64769	1.8562349999999999	2.06478	0.0578603	0.0147778	0.167723	0.106702
chr7	105016134	105016234	3374637	0	+	0.35	(0.32,0.35]	chr7	315854	12	INTRON	INTRON	KMT2E	ENSG00000005483.22	ENST00000622386.2:ENST00000257745.9:ENST00000334884.9:ENST00000311117.8:ENST00000478990.5:ENST00000480368.5:ENST00000495267.5:ENST00000476671.5:ENST00000667857.1:ENST00000474203.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	13	103	2	1.18138	1.8562250000000002	2.53107	0.0455845	0.00860484	0.164236	0.0784134
chr18	9927465	9927564	6873478	0	+	0.353535	(0.35,0.378]	chr18	680874	21	INTRON	INTRON	VAPA	ENSG00000101558.14	ENST00000400000.7:ENST00000577901.5:ENST00000340541.4:ENST00000585042.5:ENST00000584796.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	23	217	2	1.84925	1.85619	1.86313	0.00488583	0.00165878	0.0608364	0.0376746
chr7	101967300	101967400	3367867	0	+	0.46	(0.44,0.476]	chr7	315233	73	INTRON	INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000497815.5:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000558469.5:ENST00000560541.5:ENST00000558836.5:ENST00000606749.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	46	2	1.83899	1.85612	1.87325	0.0589734	0.0265709	0.167915	0.134088
chr1	184966401	184966501	602972	0	-	0.51	(0.476,0.515]	chr1	71774	667	INTRON	INTRON	NIBAN1	ENSG00000135842.17	ENST00000367511.4	protein_coding	protein_coding	protein_coding	protein_coding	5	46	2	1.79693	1.85609	1.91525	0.0649782	0.0232571	0.179417	0.127416
chr1	11919680	11919771	378960	0	-	0.549451	(0.515,0.57]	chr1	44498	2	UTR3	UTR3:EXON_MRNA	KIAA2013	ENSG00000116685.16	ENST00000376572.8	protein_coding	protein_coding	protein_coding	protein_coding	5	40	2	1.7074	1.8560400000000001	2.00468	0.0779432	0.0166344	0.196685	0.110511
chr16	16546901	16547001	6311331	0	+	0.32	(0.28,0.32]	chr16	604098	469	INTRON	INTRON	ENSG00000260126	ENSG00000260126.2	ENST00000567465.2	lncRNA	lncRNA	lncRNA	lncRNA	11	114	2	1.27959	1.8559450000000002	2.4323	0.0472883	0.00540168	0.16913	0.0644179
chr16	85559160	85559260	6415423	0	+	0.53	(0.515,0.57]	chr16	615470	24	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	9	73	2	1.32981	1.8559450000000002	2.38208	0.0640038	0.00191752	0.199279	0.0395751
chr2	20275595	20275695	1076015	0	-	0.41	(0.408,0.44]	chr2	114960	118	INTRON	INTRON	PUM2	ENSG00000055917.16	ENST00000338086.9:ENST00000361078.7:ENST00000440577.5	protein_coding	protein_coding	protein_coding	protein_coding	12	102	2	1.50203	1.85591	2.20979	0.0193894	0.00496289	0.119831	0.0615009
chr1	54390973	54391073	463607	0	-	0.57	(0.515,0.57]	chr1	55784	343	INTRON	INTRON	SSBP3	ENSG00000157216.16	ENST00000610401.5:ENST00000357475.9:ENST00000371319.8:ENST00000417664.7:ENST00000533946.6:ENST00000371320.8:ENST00000525990.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	60	2	1.64415	1.855865	2.06758	0.0231656	0.0140038	0.127036	0.0959618
chr20	62930396	62930496	7362495	0	-	0.42	(0.408,0.44]	chr20	751216	12	INTRON	INTRON	DIDO1	ENSG00000101191.17	ENST00000266070.8:ENST00000370371.8	protein_coding	protein_coding	protein_coding	protein_coding	7	60	2	1.70933	1.855805	2.00228	0.0389732	0.0189186	0.143072	0.118303
chr22	38732990	38733089	7514595	0	+	0.535354	(0.515,0.57]	chr22	767662	24	UTR3	UTR3:EXON_MRNA:INTRON	GTPBP1	ENSG00000100226.16	ENST00000216044.10:ENST00000458073.5:ENST00000484971.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	69	2	1.69047	1.85577	2.02107	0.0195683	0.00910188	0.120063	0.0809976
chr7	102554075	102554175	3588690	0	-	0.47	(0.44,0.476]	chr7	335032	83	INTRON	INTRON	POLR2J3	ENSG00000168255.20	ENST00000489144.5:ENST00000464525.5:ENST00000379340.9:ENST00000486319.5:ENST00000503564.5:ENST00000511773.5:ENST00000513506.6:ENST00000508848.5:ENST00000504677.5:ENST00000506060.5:ENST00000502415.5:ENST00000507355.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	73	2	1.5191	1.8557	2.1923	0.0526241	0.0043698	0.160983	0.0604104
chr19	57860737	57860836	7106145	0	+	0.343434	(0.32,0.35]	chr19	713245	7	UTR3	UTR3:EXON_MRNA	ZNF587	ENSG00000198466.12	ENST00000339656.8:ENST00000419854.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	11	116	2	1.77469	1.8556400000000002	1.93659	0.0115283	0.0108167	0.0960498	0.087129
chr16	89543765	89543863	6420717	0	+	0.469388	(0.44,0.476]	chr16	616270	9	EXON_MRNA	EXON_MRNA:INTRON	SPG7	ENSG00000197912.16	ENST00000647079.1:ENST00000646303.1:ENST00000643649.1:ENST00000644498.1:ENST00000645897.1:ENST00000643668.1:ENST00000644225.1:ENST00000645818.2:ENST00000645977.1:ENST00000645063.1:ENST00000646263.1:ENST00000643724.1:ENST00000644781.1:ENST00000644901.1:ENST00000645042.1:ENST00000646531.1:ENST00000646930.1:ENST00000644210.1:ENST00000646589.1:ENST00000268704.7:ENST00000646826.1:ENST00000646716.1:ENST00000643345.1:ENST00000646958.1:ENST00000643105.1:ENST00000645354.1:ENST00000642334.1:ENST00000647227.1:ENST00000646445.1:ENST00000643954.1:ENST00000646399.1:ENST00000644671.1:ENST00000644748.1:ENST00000643496.1:ENST00000647032.1:ENST00000644751.1:ENST00000642427.1:ENST00000643370.1:ENST00000645886.1:ENST00000646454.1:ENST00000561945.2:ENST00000644171.1:ENST00000566682.2:ENST00000645258.1:ENST00000644044.1:ENST00000642263.1:ENST00000644556.1:ENST00000645842.1:ENST00000643734.1:ENST00000642814.1:ENST00000644061.1:ENST00000643350.1:ENST00000645392.1:ENST00000647302.1:ENST00000644930.1:ENST00000647123.1:ENST00000643409.1:ENST00000642226.1:ENST00000646005.1:ENST00000642984.1:ENST00000647491.1:ENST00000645952.1:ENST00000645944.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	73	2	1.72944	1.85545	1.98146	0.0196145	0.0186013	0.117264	0.109486
chr11	68488175	68488275	4817607	0	+	0.34	(0.32,0.35]	chr11	448907	270	INTRON	INTRON	PPP6R3	ENSG00000110075.15	ENST00000530427.5:ENST00000528635.5:ENST00000529907.5:ENST00000533127.5:ENST00000534534.5:ENST00000529344.5:ENST00000524845.5:ENST00000393800.7:ENST00000265637.8:ENST00000524904.5:ENST00000393801.7:ENST00000265636.9:ENST00000529710.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	117	2	1.77091	1.8554249999999999	1.93994	0.0146308	0.0084207	0.0982604	0.0825628
chr1	765159	765247	357622	0	-	0.443182	(0.44,0.476]	chr1	41185	6	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO:INTRON	ENSG00000230021:ENSG00000228327	ENSG00000230021.10:ENSG00000228327.4	ENST00000634337.2:ENST00000635509.2:ENST00000506640.2:ENST00000428504.2	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene:transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	7	64	2	1.60176	1.85534	2.10892	0.0389597	0.0132897	0.160861	0.0944742
chr17	22092607	22092706	6578589	0	+	0.464646	(0.44,0.476]	chr17	639556	13	INTRON	INTRON	UBBP4	ENSG00000263563.7	ENST00000648259.1:ENST00000688301.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	24	199	2	1.29511	1.85526	2.41541	0.0222378	2.04448e-4	0.1162	0.0124557
chr13	28223874	28223974	5461687	0	+	0.46	(0.44,0.476]	chr13	523267	31	INTRON	INTRON	PAN3	ENSG00000152520.14	ENST00000503791.5:ENST00000380958.8:ENST00000399613.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	48	2	1.85146	1.85525	1.85904	0.0545846	0.029889	0.182529	0.129138
chr19	11109665	11109762	7017027	0	+	0.43299	(0.408,0.44]	chr19	697452	18	INTRON	INTRON	LDLR	ENSG00000130164.14	ENST00000557933.5:ENST00000558518.6:ENST00000545707.5:ENST00000535915.5:ENST00000455727.6:ENST00000558013.5:ENST00000252444.9:ENST00000560467.1	protein_coding	protein_coding	protein_coding	protein_coding	6	56	2	1.53263	1.855235	2.17784	0.0733439	0.00916282	0.190051	0.0855292
chr7	64801266	64801366	3320413	0	+	0.35	(0.32,0.35]	chr7	308703	63	INTRON	INTRON	ZNF138	ENSG00000197008.10	ENST00000359735.7:ENST00000440155.6:ENST00000494380.5:ENST00000307355.12:ENST00000437743.1:ENST00000440598.2:ENST00000430838.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	95	2	1.49732	1.8551199999999999	2.21292	0.0455974	0.00445585	0.149888	0.0610799
chr6	17651633	17651733	3065649	0	-	0.26	[0,0.28]	chr6	284819	4	SS5_PROX	SS5_PROX:INTRON	NUP153	ENSG00000124789.12	ENST00000613258.4:ENST00000537253.5:ENST00000262077.3	protein_coding	protein_coding	protein_coding	protein_coding	9	104	2	1.53862	1.8550550000000001	2.17149	0.0308079	0.0254957	0.133676	0.13151
chr11	87289602	87289701	4845334	0	+	0.494949	(0.476,0.515]	chr11	451872	123	INTRON	INTRON	TMEM135	ENSG00000166575.17	ENST00000340353.11:ENST00000305494.6:ENST00000532959.5	protein_coding	protein_coding	protein_coding	protein_coding	5	47	2	1.79187	1.8550200000000001	1.91817	0.0459211	0.0362169	0.164984	0.138959
chr3	6553991	6554091	1356781	0	+	0.29	(0.28,0.32]	chr3	142508	409	INTRON	INTRON	ENSG00000189229	ENSG00000189229.12	ENST00000660158.1:ENST00000433639.1:ENST00000655754.1:ENST00000653839.1:ENST00000662846.1:ENST00000659876.1:ENST00000414438.2:ENST00000658468.1:ENST00000414603.1:ENST00000669512.1:ENST00000667028.1:ENST00000655541.1:ENST00000668643.1:ENST00000671568.1:ENST00000671036.1:ENST00000669798.1:ENST00000655753.1:ENST00000655856.1:ENST00000658398.1:ENST00000661518.1:ENST00000661279.1:ENST00000655495.1:ENST00000663041.1:ENST00000659827.1:ENST00000667716.1:ENST00000662508.1:ENST00000668416.1:ENST00000658133.1:ENST00000659651.1:ENST00000342990.4:ENST00000660054.1:ENST00000671370.1	lncRNA	lncRNA	lncRNA	lncRNA	12	139	2	1.51821	1.85501	2.19181	0.0249506	0.00461581	0.132531	0.0598418
chr7	105539424	105539523	3375758	0	+	0.585859	(0.57,1]	chr7	316053	23	INTRON	INTRON	RINT1	ENSG00000135249.8	ENST00000467392.5:ENST00000482041.5:ENST00000493041.5:ENST00000257700.7:ENST00000497979.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	42	2	1.74185	1.8550049999999998	1.96816	0.0401765	0.00403305	0.143911	0.0578376
chr16	84053958	84054056	6531543	0	-	0.346939	(0.32,0.35]	chr16	632802	3	UTR3	UTR3:EXON_MRNA	MBTPS1	ENSG00000140943.18	ENST00000562906.2:ENST00000343411.8:ENST00000570064.5:ENST00000562886.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	65	2	1.60297	1.85496	2.10695	0.0647328	0.0127483	0.179192	0.0987441
chr17	35724765	35724862	6600939	0	+	0.412371	(0.408,0.44]	chr17	642370	12	UTR3	UTR3:EXON_MRNA	AP2B1	ENSG00000006125.18	ENST00000621914.4:ENST00000610402.5	protein_coding	protein_coding	protein_coding	protein_coding	14	120	2	1.62689	1.854855	2.08282	0.00962857	0.0051355	0.086971	0.062965
chr18	36060884	36060984	6963480	0	-	0.46	(0.44,0.476]	chr18	689080	76	INTRON	INTRON	RPRD1A	ENSG00000141425.18	ENST00000399022.9:ENST00000590898.5:ENST00000357384.8:ENST00000588737.5:ENST00000589050.1:ENST00000592674.1:ENST00000588459.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:nonsense_mediated_decay:processed_transcript	13	114	2	1.59359	1.8547850000000001	2.11598	0.0156777	0.0035604	0.101453	0.0548355
chr4	73208092	73208192	2160319	0	-	0.64	(0.57,1]	chr4	212794	302	INTRON	INTRON	ANKRD17	ENSG00000132466.20	ENST00000358602.9:ENST00000558247.5:ENST00000330838.10:ENST00000509867.6:ENST00000561029.1:ENST00000559367.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	52	2	1.36804	1.854695	2.34135	0.0305922	0.00191867	0.131174	0.0405205
chr1	46348773	46348872	96758	0	+	0.383838	(0.378,0.408]	chr1	13008	13	INTRON	INTRON	NSUN4	ENSG00000117481.11	ENST00000307089.7:ENST00000486270.5:ENST00000474844.6:ENST00000469918.5:ENST00000537428.2:ENST00000498008.5:ENST00000495427.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	66	2	1.77782	1.8546749999999999	1.93153	0.0388177	0.0127237	0.143072	0.0986314
chr5	178779706	178779804	2779266	0	-	0.397959	(0.378,0.408]	chr5	262234	31	INTRON	INTRON	AACSP1	ENSG00000250420.8	ENST00000503486.6:ENST00000521412.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	6	59	2	1.72045	1.854665	1.98888	0.0424671	0.0205239	0.161763	0.110999
chr8	42533172	42533272	3942494	0	-	0.32	(0.28,0.32]	chr8	361320	307	INTRON	INTRON	SLC20A2	ENSG00000168575.10	ENST00000342228.7:ENST00000520179.5:ENST00000524211.1:ENST00000518717.1:ENST00000518384.1:ENST00000524237.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	104	2	1.58784	1.854565	2.12129	0.0369776	0.00696605	0.139194	0.0754576
chr6	133987339	133987439	2962108	0	+	0.31	(0.28,0.32]	chr6	278551	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TBPL1	ENSG00000028839.10	ENST00000613034.4:ENST00000237264.9:ENST00000477527.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	104	2	1.70122	1.85454	2.00786	0.0356118	0.00687366	0.138061	0.0749442
chr22	20082453	20082551	7478251	0	+	0.520408	(0.515,0.57]	chr22	762700	14	INTRON	INTRON	DGCR8	ENSG00000128191.16	ENST00000383024.6:ENST00000351989.8:ENST00000457069.1	protein_coding	protein_coding	protein_coding	protein_coding	23	173	2	1.50975	1.85447	2.19919	0.0084035	4.43206e-4	0.0824683	0.0194302
chr19	5079831	5079926	7004536	0	+	0.431579	(0.408,0.44]	chr19	694845	8	INTRON	INTRON	KDM4B	ENSG00000127663.15	ENST00000159111.9:ENST00000611640.4:ENST00000381759.8:ENST00000536461.5:ENST00000592175.5:ENST00000589104.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	71	2	1.58622	1.85441	2.1226	0.0291748	0.012812	0.141552	0.0926667
chr14	96851147	96851245	5811405	0	+	0.489796	(0.476,0.515]	chr14	551049	23	INTRON	INTRON	VRK1	ENSG00000100749.9	ENST00000553683.2:ENST00000680538.1:ENST00000555351.2:ENST00000681195.1:ENST00000681524.1:ENST00000680084.1:ENST00000679533.1:ENST00000681598.1:ENST00000679727.1:ENST00000679758.1:ENST00000680509.1:ENST00000557222.6:ENST00000679977.1:ENST00000680387.1:ENST00000680335.1:ENST00000680683.1:ENST00000681474.1:ENST00000216639.8:ENST00000681363.1:ENST00000681538.1:ENST00000679736.1:ENST00000681176.1:ENST00000680922.1:ENST00000679903.1:ENST00000557352.2:ENST00000681101.1:ENST00000681419.1:ENST00000680348.1:ENST00000679941.1:ENST00000679452.1:ENST00000680849.1:ENST00000679770.1:ENST00000681493.1:ENST00000681778.1:ENST00000680993.1:ENST00000681355.1:ENST00000681695.1:ENST00000681344.1:ENST00000680007.1:ENST00000679918.1:ENST00000681785.1:ENST00000679816.1:ENST00000680756.1:ENST00000681249.1:ENST00000680526.1:ENST00000679365.1:ENST00000680851.1:ENST00000679506.1:ENST00000679650.1:ENST00000679462.1:ENST00000680724.1:ENST00000680339.1:ENST00000680384.1:ENST00000680222.1:ENST00000681077.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	64	2	1.53534	1.8544049999999999	2.17347	0.0476737	0.010447	0.170116	0.0855102
chr6	26172981	26173075	2837299	0	+	0.340426	(0.32,0.35]	chr6	266034	2	SS5_PROX	SS5_PROX:INTRON	H2BC6	ENSG00000274290.3	ENST00000634910.1	protein_coding	protein_coding	protein_coding	protein_coding	5	55	2	1.69107	1.854375	2.01768	0.0517392	0.0361337	0.159306	0.152563
chr5	10435951	10436050	2318505	0	+	0.474747	(0.44,0.476]	chr5	224765	24	UTR3	UTR3:EXON_MRNA:INTRON	MARCHF6	ENSG00000145495.16	ENST00000274140.10:ENST00000606497.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	95	2	1.38395	1.85423	2.32451	0.0392605	0.00241361	0.143072	0.0453973
chr1	207692952	207693052	304430	0	+	0.3	(0.28,0.32]	chr1	35014	86	INTRON	INTRON	CR1L	ENSG00000197721.17	ENST00000508064.7:ENST00000530905.1:ENST00000294997.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	59	2	1.61031	1.8541249999999998	2.09794	0.0600513	0.0340483	0.190658	0.134863
chr21	6722588	6722685	7365191	0	+	0.309278	(0.28,0.32]	chr21	751690	2	INTRON	INTRON	ENSG00000280164	ENSG00000280164.1	ENST00000623892.1	lncRNA	lncRNA	lncRNA	lncRNA	5	59	2	1.61031	1.8541249999999998	2.09794	0.0600513	0.0340483	0.190658	0.134863
chr5	14695906	14696005	2321206	0	+	0.282828	(0.28,0.32]	chr5	224848	30	UTR3	UTR3:EXON_MRNA	OTULIN	ENSG00000154124.5	ENST00000284274.5	protein_coding	protein_coding	protein_coding	protein_coding	5	59	2	1.61031	1.8541249999999998	2.09794	0.0600513	0.0340483	0.190658	0.134863
chr9	37141133	37141233	4117864	0	+	0.43	(0.408,0.44]	chr9	375372	138	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000322831.6:ENST00000461038.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	99	2	1.42285	1.85411	2.28537	0.0421231	0.00158783	0.148082	0.0367961
chr22	21789308	21789406	7560599	0	-	0.336735	(0.32,0.35]	chr22	773370	1	INTRON	INTRON	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	11	112	2	1.20134	1.8540050000000001	2.50667	0.0737029	0.00118337	0.190643	0.031662
chrX	48255632	48255732	7658164	0	+	0.49	(0.476,0.515]	chrX	783659	2	SS5_PROX	SS5_PROX:INTRON	SSX1	ENSG00000126752.8	ENST00000376919.4	protein_coding	protein_coding	protein_coding	protein_coding	12	105	2	1.54739	1.8539700000000001	2.16055	0.0222105	0.00292015	0.116092	0.0494641
chr1	180479986	180480086	595607	0	-	0.32	(0.28,0.32]	chr1	71198	494	INTRON	INTRON	ACBD6	ENSG00000230124.8	ENST00000645415.1:ENST00000642319.1:ENST00000367595.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	91	2	1.83303	1.853885	1.87474	0.0370023	0.0115687	0.139194	0.0962115
chr1	109380780	109380880	520848	0	-	0.42	(0.408,0.44]	chr1	61195	108	INTRON	INTRON	SORT1	ENSG00000134243.12	ENST00000538502.5:ENST00000256637.8:ENST00000493736.5:ENST00000482236.5:ENST00000633956.1:ENST00000471996.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	92	2	1.39614	1.8538299999999999	2.31152	0.0567929	0.00139382	0.167723	0.0341355
chr22	20111089	20111187	7478556	0	+	0.602041	(0.57,1]	chr22	762762	11	UTR3	UTR3:EXON_MRNA	DGCR8	ENSG00000128191.16	ENST00000383024.6:ENST00000351989.8:ENST00000495826.5:ENST00000407755.1:ENST00000498171.5:ENST00000475941.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	15	69	2	1.80787	1.8538000000000001	1.89973	0.0086124	0.00202455	0.0838082	0.04086
chr8	129463980	129464080	4059914	0	-	0.26	[0,0.28]	chr8	369602	67	INTRON	INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1:ENST00000676273.1:ENST00000667643.1:ENST00000668791.1:ENST00000663716.1:ENST00000663572.1:ENST00000676148.1:ENST00000667962.1:ENST00000674877.1:ENST00000675316.1:ENST00000674656.1:ENST00000446592.7:ENST00000667341.1:ENST00000675186.1:ENST00000652971.1:ENST00000661447.1:ENST00000674863.1:ENST00000675498.1:ENST00000675527.1:ENST00000676108.1:ENST00000657647.1:ENST00000675589.1:ENST00000675913.1:ENST00000675109.1:ENST00000671632.1:ENST00000671311.1:ENST00000676099.1:ENST00000660652.1:ENST00000675522.1:ENST00000675183.1:ENST00000658861.1:ENST00000663991.1:ENST00000675044.1:ENST00000675435.1:ENST00000674639.1:ENST00000676069.1:ENST00000675532.1:ENST00000674762.1:ENST00000523151.6:ENST00000675948.1:ENST00000665364.1:ENST00000657251.1:ENST00000675166.1:ENST00000674883.1:ENST00000675867.1:ENST00000674580.1:ENST00000675393.1:ENST00000520048.1:ENST00000674906.1:ENST00000676030.1:ENST00000670588.1:ENST00000675072.1:ENST00000664936.1:ENST00000652914.1:ENST00000657069.1	lncRNA	lncRNA	lncRNA	lncRNA	7	96	2	1.78859	1.8537849999999998	1.91898	0.0307903	0.0266433	0.134413	0.13151
chr16	47488422	47488522	6343573	0	+	0.29	(0.28,0.32]	chr16	608849	241	INTRON	INTRON	PHKB	ENSG00000102893.17	ENST00000566037.6:ENST00000566044.5:ENST00000299167.12:ENST00000696809.1:ENST00000323584.10:ENST00000565424.2:ENST00000567402.5:ENST00000563376.5:ENST00000564873.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	51	2	1.51776	1.853755	2.18975	0.0776042	0.0528371	0.196285	0.178899
chr4	103163553	103163653	2215248	0	-	0.31	(0.28,0.32]	chr4	217116	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	CENPE	ENSG00000138778.14	ENST00000380026.8:ENST00000265148.9	protein_coding	protein_coding	protein_coding	protein_coding	5	51	2	1.51776	1.853755	2.18975	0.0776042	0.0528371	0.196285	0.178899
chr15	34527338	34527435	6133309	0	-	0.381443	(0.378,0.408]	chr15	584297	24	UTR3	UTR3:EXON_MRNA	GOLGA8B	ENSG00000215252.12	ENST00000683415.1:ENST00000342314.9:ENST00000569100.5:ENST00000438958.2:ENST00000484716.5:ENST00000568555.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	61	2	1.2437	1.853715	2.46373	0.049286	0.0382831	0.174117	0.141795
chr5	87327890	87327990	2668060	0	-	0.5	(0.476,0.515]	chr5	252550	86	INTRON	INTRON	CCNH	ENSG00000134480.16	ENST00000645953.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	6	55	2	1.63838	1.8536799999999998	2.06898	0.0555021	0.0137491	0.165463	0.10247
chr2	169594724	169594823	906574	0	+	0.434343	(0.408,0.44]	chr2	100021	16	INTRON	INTRON	PPIG	ENSG00000138398.17	ENST00000678088.1:ENST00000677392.1:ENST00000433207.6:ENST00000679324.1:ENST00000414307.6:ENST00000676508.1:ENST00000260970.8:ENST00000678695.1:ENST00000409714.7:ENST00000530152.5:ENST00000677750.1:ENST00000676557.1:ENST00000678721.1:ENST00000462903.6:ENST00000676756.1:ENST00000679107.1:ENST00000678499.1:ENST00000678638.1:ENST00000448752.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	73	2	1.73753	1.8536299999999999	1.96973	0.0275537	0.0108773	0.123904	0.0923273
chr21	46423203	46423300	7422248	0	+	0.505155	(0.476,0.515]	chr21	756886	7	INTRON	INTRON	PCNT	ENSG00000160299.18	ENST00000695558.1:ENST00000359568.10:ENST00000480896.5:ENST00000695527.1:ENST00000695528.1:ENST00000695529.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	72	2	1.71266	1.853615	1.99457	0.0293304	0.009924	0.128055	0.0877296
chr1	213161262	213161362	311807	0	+	0.34	(0.32,0.35]	chr1	35945	310	INTRON	INTRON	RPS6KC1	ENSG00000136643.12	ENST00000615329.4:ENST00000543354.5:ENST00000614059.4:ENST00000543470.5:ENST00000366960.8:ENST00000366959.4:ENST00000490299.5:ENST00000468069.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	106	2	1.52721	1.8536099999999998	2.18001	0.0417858	0.00302699	0.147075	0.0508897
chr21	42846453	42846552	7467570	0	-	0.464646	(0.44,0.476]	chr21	760925	28	INTRON	INTRON	WDR4	ENSG00000160193.12	ENST00000330317.6	protein_coding	protein_coding	protein_coding	protein_coding	9	82	2	1.58453	1.85358	2.12263	0.0293513	0.00692375	0.142102	0.0718189
chr9	137104328	137104426	4222831	0	+	0.510204	(0.476,0.515]	chr9	387932	28	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MAN1B1	ENSG00000177239.16	ENST00000682881.1:ENST00000683324.1:ENST00000684138.1:ENST00000683135.1:ENST00000542372.2:ENST00000371587.9:ENST00000684366.1:ENST00000684229.1:ENST00000683355.1:ENST00000682117.1:ENST00000683475.1:ENST00000682425.1:ENST00000684645.1:ENST00000683979.1:ENST00000371589.9:ENST00000535144.6:ENST00000684272.1:ENST00000475449.7:ENST00000684759.1:ENST00000545539.6:ENST00000684144.1:ENST00000683987.1:ENST00000682212.1:ENST00000544448.6:ENST00000684297.1:ENST00000474902.5:ENST00000682964.1:ENST00000535028.6:ENST00000536349.6:ENST00000684336.1:ENST00000540391.5:ENST00000480100.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	55	2	1.79187	1.8535599999999999	1.91525	0.0362169	0.0232571	0.138959	0.127416
chr1	186401622	186401721	277813	0	+	0.323232	(0.32,0.35]	chr1	32482	22	INTRON	INTRON	ODR4	ENSG00000157181.16	ENST00000367470.8:ENST00000287859.11:ENST00000419367.8:ENST00000478571.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	54	2	1.61669	1.85337	2.09005	0.0578816	0.0330483	0.188651	0.133816
chr12	120464882	120464943	5433973	0	-	0.393443	(0.378,0.408]	chr12	519505	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	SRSF9	ENSG00000111786.9	ENST00000229390.8:ENST00000548792.1:ENST00000603963.1:ENST00000550458.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	48	2	1.53052	1.8533	2.17608	0.0744544	0.0218783	0.192012	0.123836
chr19	9426409	9426508	7132472	0	-	0.393939	(0.378,0.408]	chr19	718745	58	INTRON	INTRON	ZNF266	ENSG00000174652.20	ENST00000592904.7:ENST00000588221.5:ENST00000588933.5:ENST00000590306.5:ENST00000651268.1:ENST00000592292.5	protein_coding	protein_coding	protein_coding	protein_coding	5	48	2	1.53052	1.8533	2.17608	0.0744544	0.0218783	0.192012	0.123836
chr7	157152821	157152921	3454078	0	+	0.4	(0.378,0.408]	chr7	322895	131	INTRON	INTRON	UBE3C	ENSG00000009335.18	ENST00000611269.4:ENST00000348165.10:ENST00000389103.4:ENST00000430750.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	48	2	1.53052	1.8533	2.17608	0.0744544	0.0218783	0.192012	0.123836
chrX	154361147	154361207	7913661	0	-	0.383333	(0.378,0.408]	chrX	805757	2	SS5_PROX	SS5_PROX:INTRON	FLNA	ENSG00000196924.19	ENST00000420627.5:ENST00000422373.6:ENST00000360319.9:ENST00000369856.8:ENST00000369850.10:ENST00000676696.1:ENST00000610817.5:ENST00000673639.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	48	2	1.53052	1.8533	2.17608	0.0744544	0.0218783	0.192012	0.123836
chr4	139117528	139117628	2246746	0	-	0.46	(0.44,0.476]	chr4	219577	3	SS5_PROX	SS5_PROX:INTRON	ELF2	ENSG00000109381.21	ENST00000394235.6:ENST00000686138.1:ENST00000379550.5:ENST00000511184.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	13	113	2	1.84794	1.8532199999999999	1.8585	0.0127847	0.00415914	0.0926667	0.0590902
chr19	11124438	11124537	7017188	0	+	0.353535	(0.35,0.378]	chr19	697502	7	INTRON	INTRON	LDLR	ENSG00000130164.14	ENST00000557933.5:ENST00000558518.6:ENST00000545707.5:ENST00000535915.5:ENST00000455727.6:ENST00000558013.5:ENST00000252444.9	protein_coding	protein_coding	protein_coding	protein_coding	4	42	2	1.82887	1.85302	1.87717	0.0584878	0.0555068	0.189395	0.165463
chr8	129434990	129435090	4059621	0	-	0.36	(0.35,0.378]	chr8	369584	324	INTRON	INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1:ENST00000676273.1:ENST00000667643.1:ENST00000668791.1:ENST00000663716.1:ENST00000663572.1:ENST00000676148.1:ENST00000667962.1:ENST00000674877.1:ENST00000675316.1:ENST00000674656.1:ENST00000446592.7:ENST00000667341.1:ENST00000675186.1:ENST00000652971.1:ENST00000661447.1:ENST00000674863.1:ENST00000675498.1:ENST00000675527.1:ENST00000676108.1:ENST00000657647.1:ENST00000675589.1:ENST00000675913.1:ENST00000675109.1:ENST00000671632.1:ENST00000671311.1:ENST00000676099.1:ENST00000660652.1:ENST00000675522.1:ENST00000675183.1:ENST00000658861.1:ENST00000663991.1:ENST00000675044.1:ENST00000675435.1:ENST00000674639.1:ENST00000676069.1:ENST00000675532.1:ENST00000674762.1:ENST00000523151.6:ENST00000675948.1:ENST00000665364.1:ENST00000657251.1:ENST00000675166.1:ENST00000674883.1:ENST00000675867.1:ENST00000674580.1:ENST00000675393.1:ENST00000520048.1:ENST00000674906.1:ENST00000676030.1:ENST00000670588.1:ENST00000675072.1:ENST00000664936.1:ENST00000652914.1:ENST00000657069.1	lncRNA	lncRNA	lncRNA	lncRNA	4	42	2	1.82887	1.85302	1.87717	0.0584878	0.0555068	0.189395	0.165463
chr16	81476982	81477082	6405319	0	+	0.49	(0.476,0.515]	chr16	615026	311	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8	protein_coding	protein_coding	protein_coding	protein_coding	7	59	2	1.32871	1.85301	2.37731	0.0678032	0.0111793	0.184298	0.0937192
chr6	163420555	163420654	3031761	0	+	0.353535	(0.35,0.378]	chr6	282555	37	INTRON	INTRON	QKI	ENSG00000112531.17	ENST00000361758.8:ENST00000453779.6:ENST00000275262.11:ENST00000392127.6:ENST00000361752.8:ENST00000361195.6:ENST00000424802.7:ENST00000545607.5:ENST00000544436.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	77	2	1.71241	1.85296	1.99351	0.020841	0.019274	0.119831	0.111648
chr6	154767693	154767793	3002160	0	+	0.48	(0.476,0.515]	chr6	280737	253	INTRON	INTRON	SCAF8	ENSG00000213079.10	ENST00000367186.7:ENST00000417268.3:ENST00000461219.5:ENST00000367178.8:ENST00000464628.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	58	2	1.38864	1.85295	2.31726	0.0547008	0.015077	0.182743	0.0994339
chr7	100344674	100344773	3364424	0	+	0.59596	(0.57,1]	chr7	314641	35	INTRON	INTRON	STAG3L5P:STAG3L5P-PVRIG2P-PILRB	ENSG00000242294.6:ENSG00000272752.6	ENST00000473757.5:ENST00000470714.5:ENST00000310771.8:ENST00000483329.6:ENST00000444874.5:ENST00000488972.6:ENST00000493499.1	lncRNA	retained_intron	lncRNA:transcribed_unprocessed_pseudogene	retained_intron:lncRNA:processed_transcript	12	55	2	1.42019	1.8529499999999999	2.28571	0.0315411	0.00125922	0.144381	0.0323898
chr7	23451584	23451684	3503478	0	-	0.42	(0.408,0.44]	chr7	326910	204	INTRON	INTRON	IGF2BP3	ENSG00000136231.14	ENST00000258729.8:ENST00000421467.6:ENST00000468263.5:ENST00000491719.5:ENST00000476938.5:ENST00000468005.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	53	2	1.43792	1.8529200000000001	2.26792	0.062843	0.0179973	0.196433	0.106756
chr18	2565731	2565829	6942567	0	-	0.459184	(0.44,0.476]	chr18	686672	15	INTRON	INTRON	METTL4	ENSG00000101574.15	ENST00000319888.10:ENST00000574538.2:ENST00000573134.1:ENST00000577166.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	64	2	1.72421	1.852835	1.98146	0.0285163	0.0186013	0.12666	0.117264
chr4	82897301	82897394	2180174	0	-	0.268817	[0,0.28]	chr4	214418	12	INTRON	INTRON	SEC31A:THAP9-AS1	ENSG00000138674.17:ENSG00000251022.6	ENST00000355196.6:ENST00000503210.5:ENST00000507676.5:ENST00000506495.5:ENST00000507051.1:ENST00000504520.6:ENST00000504792.6:ENST00000512932.5:ENST00000511271.5:ENST00000508772.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	7	94	2	1.67675	1.85283	2.02891	0.0352695	0.0236076	0.150332	0.118716
chr20	38080500	38080600	7269353	0	+	0.41	(0.408,0.44]	chr20	738717	100	INTRON	INTRON	RPRD1B	ENSG00000101413.12	ENST00000462548.6:ENST00000373433.9:ENST00000449186.2:ENST00000618318.1:ENST00000614670.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	82	2	1.31757	1.852795	2.38802	0.0705974	0.00178825	0.184528	0.0392749
chr7	156680085	156680185	3685859	0	-	0.26	[0,0.28]	chr7	341973	24	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	LMBR1	ENSG00000105983.23	ENST00000430825.3:ENST00000353442.10	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	69	2	1.69895	1.85272	2.00649	0.0568939	0.040391	0.167723	0.161534
chr1	90028791	90028890	161036	0	+	0.454545	(0.44,0.476]	chr1	17365	12	UTR3	UTR3:EXON_MRNA	ZNF326	ENSG00000162664.17	ENST00000340281.9:ENST00000370447.3	protein_coding	protein_coding	protein_coding	protein_coding	15	126	2	1.34464	1.8526850000000001	2.36073	0.0297902	0.00108744	0.129138	0.0301337
chr10	73029367	73029466	4647160	0	-	0.393939	(0.378,0.408]	chr10	427494	121	INTRON	INTRON	P4HA1	ENSG00000122884.13	ENST00000394890.7:ENST00000307116.6:ENST00000373008.6:ENST00000440381.5:ENST00000263556.3	protein_coding	protein_coding	protein_coding	protein_coding	14	128	2	1.46505	1.852675	2.2403	0.0262608	0.00125943	0.122221	0.03295
chr20	62936695	62936795	7362558	0	-	0.57	(0.515,0.57]	chr20	751216	75	INTRON	INTRON	DIDO1	ENSG00000101191.17	ENST00000266070.8:ENST00000370371.8	protein_coding	protein_coding	protein_coding	protein_coding	11	81	2	1.44412	1.85256	2.261	0.0281447	0.00333544	0.137182	0.0512081
chr10	6166408	6166508	4386209	0	+	0.38	(0.378,0.408]	chr10	404834	20	INTRON	INTRON	PFKFB3	ENSG00000170525.21	ENST00000379789.8:ENST00000536985.6:ENST00000639949.1	protein_coding	protein_coding	protein_coding	protein_coding	5	48	2	1.59317	1.8525550000000002	2.11194	0.0603812	0.0292534	0.19151	0.128055
chr12	22628488	22628588	5094775	0	+	0.26	[0,0.28]	chr12	481224	24	INTRON	INTRON	ETNK1	ENSG00000139163.16	ENST00000671733.1:ENST00000335148.8:ENST00000672951.1:ENST00000266517.9:ENST00000538218.2:ENST00000673496.1:ENST00000673406.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	114	2	1.73044	1.85235	1.97426	0.0275926	0.0161924	0.123904	0.109464
chr4	56921362	56921461	1963450	0	+	0.282828	(0.28,0.32]	chr4	197058	11	INTRON	INTRON	REST	ENSG00000084093.19	ENST00000640168.2:ENST00000309042.12:ENST00000640343.2:ENST00000514063.2:ENST00000638187.2:ENST00000616975.5:ENST00000622863.4:ENST00000619101.5:ENST00000611211.2:ENST00000675105.1:ENST00000675341.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	49	2	1.83771	1.8522750000000001	1.86684	0.0605813	0.0591725	0.189982	0.171122
chr6	12030364	12030463	2814407	0	+	0.30303	(0.28,0.32]	chr6	264794	96	INTRON	INTRON	HIVEP1	ENSG00000095951.17	ENST00000491710.5:ENST00000487103.5:ENST00000379388.7:ENST00000627968.2:ENST00000541134.5:ENST00000442081.6:ENST00000478545.1:ENST00000484210.1	protein_coding	protein_coding	protein_coding	protein_coding	4	49	2	1.83771	1.8522750000000001	1.86684	0.0605813	0.0591725	0.189982	0.171122
chr10	998204	998303	4379095	0	+	0.50505	(0.476,0.515]	chr10	403833	5	INTRON	INTRON	GTPBP4	ENSG00000107937.19	ENST00000360803.9:ENST00000491635.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	80	2	1.82595	1.85222	1.87849	0.0202339	0.00992862	0.109955	0.0877296
chr4	26332744	26332844	1936790	0	+	0.48	(0.476,0.515]	chr4	194354	94	INTRON	INTRON	RBPJ	ENSG00000168214.22	ENST00000512351.5:ENST00000681799.1:ENST00000681403.1:ENST00000342295.6:ENST00000512671.6:ENST00000506956.5:ENST00000345843.8:ENST00000361572.10:ENST00000514380.5:ENST00000514807.5:ENST00000348160.9:ENST00000681506.1:ENST00000509158.6:ENST00000691085.1:ENST00000692303.1:ENST00000681856.1:ENST00000513182.5:ENST00000681025.1:ENST00000681679.1:ENST00000680210.1:ENST00000355476.8:ENST00000680140.1:ENST00000511401.5:ENST00000680511.1:ENST00000510778.7:ENST00000679698.1:ENST00000679469.1:ENST00000681484.1:ENST00000505958.6:ENST00000507561.5:ENST00000514730.5:ENST00000507574.5:ENST00000514675.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	58	2	1.43644	1.8521649999999998	2.26789	0.047372	0.0176567	0.169265	0.105233
chr4	139163676	139163776	2247212	0	-	0.49	(0.476,0.515]	chr4	219601	238	INTRON	INTRON	ELF2	ENSG00000109381.21	ENST00000394235.6:ENST00000686138.1:ENST00000511184.5:ENST00000511006.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	58	2	1.43644	1.8521649999999998	2.26789	0.047372	0.0176567	0.169265	0.105233
chr1	113081332	113081432	188175	0	+	0.36	(0.35,0.378]	chr1	20854	73	INTRON	INTRON	LRIG2	ENSG00000198799.12	ENST00000361127.6	protein_coding	protein_coding	protein_coding	protein_coding	13	110	2	1.50305	1.85213	2.20121	0.0146142	0.0104157	0.106137	0.085482
chr1	165831926	165832026	243792	0	+	0.52	(0.515,0.57]	chr1	29139	36	INTRON	INTRON	UCK2	ENSG00000143179.16	ENST00000367879.9:ENST00000642653.1	protein_coding	protein_coding	protein_coding	protein_coding	7	55	2	1.82142	1.8520050000000001	1.88259	0.0251849	0.0191173	0.133519	0.108861
chr16	70436251	70436351	6511437	0	-	0.54	(0.515,0.57]	chr16	630693	133	INTRON	INTRON	ST3GAL2	ENSG00000157350.13	ENST00000342907.3:ENST00000566097.1:ENST00000567586.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	55	2	1.82142	1.8520050000000001	1.88259	0.0251849	0.0191173	0.133519	0.108861
chr22	21866221	21866321	7561372	0	-	0.56	(0.515,0.57]	chr22	773388	580	INTRON	INTRON	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	7	55	2	1.82142	1.8520050000000001	1.88259	0.0251849	0.0191173	0.133519	0.108861
chr6	44130745	44130845	2872362	0	+	0.5	(0.476,0.515]	chr6	272384	25	INTRON	INTRON	TMEM63B	ENSG00000137216.19	ENST00000259746.13:ENST00000323267.11:ENST00000532634.5:ENST00000534326.5:ENST00000525294.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	73	2	1.16233	1.85195	2.54157	0.0635535	0.00697457	0.198287	0.0718189
chr22	20517483	20517582	7479446	0	+	0.606061	(0.57,1]	chr22	762951	87	INTRON	INTRON	MED15	ENSG00000099917.17	ENST00000445987.5:ENST00000444094.5:ENST00000414658.5:ENST00000486656.5:ENST00000433831.5:ENST00000432052.5:ENST00000292733.11:ENST00000263205.11:ENST00000477824.5:ENST00000406969.5:ENST00000382974.6:ENST00000441501.5:ENST00000438962.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	24	2	1.67986	1.8518849999999998	2.02391	0.0496395	0.0339274	0.174685	0.134508
chr10	926831	926931	4542539	0	-	0.49	(0.476,0.515]	chr10	419310	20	INTRON	INTRON	LARP4B	ENSG00000107929.16	ENST00000316157.8:ENST00000690516.1:ENST00000476529.5:ENST00000406525.6:ENST00000481118.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	38	2	1.8388	1.8518599999999998	1.86492	0.0564473	0.0550347	0.184423	0.165463
chr14	58295611	58295711	5904720	0	-	0.5	(0.476,0.515]	chr14	560849	24	EXON_LNCRNA	EXON_LNCRNA:INTRON	PSMA3-AS1	ENSG00000257621.9	ENST00000554360.5:ENST00000556002.5:ENST00000555275.5:ENST00000554378.5:ENST00000555707.5:ENST00000556400.5:ENST00000557660.5:ENST00000553657.5:ENST00000555037.1:ENST00000551597.6:ENST00000554309.1	lncRNA	lncRNA	lncRNA	lncRNA	4	38	2	1.8388	1.8518599999999998	1.86492	0.0564473	0.0550347	0.184423	0.165463
chr19	2146366	2146466	7115500	0	-	0.5	(0.476,0.515]	chr19	715270	73	INTRON	INTRON	AP3D1	ENSG00000065000.19	ENST00000643116.3:ENST00000345016.9:ENST00000643010.1:ENST00000591284.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	38	2	1.8388	1.8518599999999998	1.86492	0.0564473	0.0550347	0.184423	0.165463
chr22	21619626	21619725	7482226	0	+	0.363636	(0.35,0.378]	chr22	763251	46	INTRON	INTRON	UBE2L3	ENSG00000185651.16	ENST00000458578.6:ENST00000545681.2:ENST00000696046.1:ENST00000342192.9:ENST00000496722.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	51	2	1.6599	1.85174	2.04358	0.0545616	0.0329533	0.165292	0.145171
chr6	158605647	158605747	3022060	0	+	0.38	(0.378,0.408]	chr6	281827	3	SS5_PROX	SS5_PROX:INTRON	TMEM181	ENSG00000146433.10	ENST00000367090.4:ENST00000684151.1	protein_coding	protein_coding	protein_coding	protein_coding	7	66	2	1.56313	1.8517099999999997	2.14029	0.0474151	0.0106742	0.153019	0.0917199
chr1	225984601	225984701	646306	0	-	0.49	(0.476,0.515]	chr1	76574	20	UTR3	UTR3:EXON_MRNA	SDE2	ENSG00000143751.10	ENST00000272091.8	protein_coding	protein_coding	protein_coding	protein_coding	26	226	2	1.31757	1.851705	2.38584	0.0169416	2.18094e-4	0.110899	0.0135423
chr6	127296436	127296536	3211382	0	-	0.39	(0.378,0.408]	chr6	298724	18	INTRON	INTRON	ECHDC1	ENSG00000093144.19	ENST00000454859.8:ENST00000531967.5:ENST00000474289.6:ENST00000368295.8:ENST00000454591.6:ENST00000528402.5:ENST00000479525.6:ENST00000368291.6:ENST00000475319.1:ENST00000430841.6:ENST00000368289.6:ENST00000417628.6:ENST00000368292.10:ENST00000436638.5:ENST00000460558.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	58	2	1.8374	1.85169	1.86598	0.0300232	0.0299228	0.142135	0.129138
chr6	4061807	4061906	2790120	0	+	0.373737	(0.35,0.378]	chr6	263563	13	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PRPF4B	ENSG00000112739.17	ENST00000480058.5:ENST00000337659.11:ENST00000481109.5:ENST00000463634.6:ENST00000494674.1:ENST00000490653.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	70	2	1.67913	1.8516849999999998	2.02424	0.0345494	0.0164934	0.13657	0.110301
chr1	151633403	151633503	225934	0	+	0.51	(0.476,0.515]	chr1	25862	186	INTRON	INTRON	SNX27	ENSG00000143376.14	ENST00000642376.1:ENST00000368843.8:ENST00000458013.7:ENST00000368841.7:ENST00000642479.1:ENST00000642349.1:ENST00000643179.1:ENST00000643814.1:ENST00000642582.1:ENST00000644970.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	46	2	1.63838	1.851645	2.06491	0.0555021	0.0304733	0.165463	0.143385
chr7	6037123	6037223	3476014	0	-	0.61	(0.57,1]	chr7	325181	3	SS5_PROX	SS5_PROX:INTRON	EIF2AK1	ENSG00000086232.13	ENST00000199389.11	protein_coding	protein_coding	protein_coding	protein_coding	6	28	2	1.79898	1.8515899999999998	1.9042	0.0476976	0.0206524	0.153019	0.122348
chr12	45737294	45737394	5122791	0	+	0.52	(0.515,0.57]	chr12	483299	56	INTRON	INTRON	ARID2	ENSG00000189079.17	ENST00000334344.11:ENST00000427628.5:ENST00000426776.5:ENST00000422737.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	40	2	1.75372	1.851585	1.94945	0.0414068	0.0386904	0.161557	0.14279
chr16	2155254	2155329	6431362	0	-	0.56	(0.515,0.57]	chr16	618735	3	EXON_LNCRNA	EXON_LNCRNA	SNHG19	ENSG00000260260.2	ENST00000563192.2:ENST00000686899.1:ENST00000688686.1:ENST00000690872.1:ENST00000686256.1:ENST00000691298.1:ENST00000689999.1	lncRNA	lncRNA	lncRNA	lncRNA	5	40	2	1.75372	1.851585	1.94945	0.0414068	0.0386904	0.161557	0.14279
chr7	849115	849191	3268809	0	+	0.381579	(0.378,0.408]	chr7	303588	1	SS3_PROX	SS3_PROX:INTRON	SUN1	ENSG00000164828.18	ENST00000452783.6:ENST00000389574.7:ENST00000401592.6:ENST00000413171.6:ENST00000405266.5:ENST00000340926.7:ENST00000425407.6:ENST00000450881.5:ENST00000419312.5:ENST00000429178.5:ENST00000433212.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	21	174	2	1.44974	1.851565	2.25339	0.0102947	0.00170463	0.0891907	0.0373845
chr17	20869980	20870080	6576078	0	+	0.3	(0.28,0.32]	chr17	639372	9	INTRON	INTRON	CCDC144NL-AS1	ENSG00000233098.10	ENST00000577537.5:ENST00000692759.1:ENST00000443508.8:ENST00000692309.1:ENST00000439794.6:ENST00000417232.6:ENST00000583962.2:ENST00000582324.5:ENST00000577860.5	lncRNA	lncRNA	lncRNA	lncRNA	35	374	2	1.63014	1.85153	2.07292	0.00344114	0.00168729	0.0539802	0.0370443
chr7	130132828	130132927	3414229	0	+	0.454545	(0.44,0.476]	chr7	319162	22	UTR3	UTR3:EXON_MRNA	KLHDC10	ENSG00000128607.14	ENST00000335420.10	protein_coding	protein_coding	protein_coding	protein_coding	5	40	2	1.49356	1.851525	2.20949	0.0672585	0.0537505	0.183051	0.180803
chr3	177176803	177176903	1872242	0	-	0.49	(0.476,0.515]	chr3	187438	55	INTRON	INTRON	TBL1XR1	ENSG00000177565.18	ENST00000457928.7:ENST00000430069.5:ENST00000673974.1:ENST00000352800.10:ENST00000422442.6:ENST00000428970.5:ENST00000424913.5:ENST00000437738.5:ENST00000431421.5:ENST00000635794.1:ENST00000630796.2:ENST00000450267.5:ENST00000630833.2:ENST00000431674.5:ENST00000422066.5:ENST00000443315.5:ENST00000627825.2:ENST00000427349.5:ENST00000413084.5:ENST00000637137.1:ENST00000491623.2:ENST00000637544.1:ENST00000636187.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	72	2	1.63187	1.851515	2.07116	0.037661	0.00731321	0.14058	0.076234
chr20	35649723	35649823	7335627	0	-	0.24	[0,0.28]	chr20	747287	9	UTR3	UTR3:EXON_MRNA:INTRON	CPNE1:RBM12	ENSG00000214078.13:ENSG00000244462.8	ENST00000352393.8:ENST00000397443.7:ENST00000317677.9:ENST00000483359.5:ENST00000397442.5:ENST00000401607.6:ENST00000437340.5:ENST00000430570.5:ENST00000412056.5:ENST00000414664.5:ENST00000416778.5:ENST00000439806.6:ENST00000439669.5:ENST00000420363.5:ENST00000434795.5:ENST00000440240.5:ENST00000458038.5:ENST00000437100.5:ENST00000414711.5:ENST00000435747.2:ENST00000374114.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	77	2	1.53147	1.85148	2.17149	0.0533898	0.0308079	0.179876	0.13151
chr16	21474140	21474238	6461089	0	-	0.540816	(0.515,0.57]	chr16	623337	5	INTRON	INTRON	SMG1P3	ENSG00000180747.15	ENST00000522480.5:ENST00000522841.6	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	6	45	2	1.68552	1.851445	2.01737	0.0352218	0.0292028	0.141637	0.137535
chr16	87858415	87858514	6538986	0	-	0.525253	(0.515,0.57]	chr16	633643	62	INTRON	INTRON	SLC7A5	ENSG00000103257.9	ENST00000261622.5:ENST00000565644.5	protein_coding	protein_coding	protein_coding	protein_coding	6	45	2	1.68552	1.851445	2.01737	0.0352218	0.0292028	0.141637	0.137535
chr7	123743317	123743417	3632604	0	-	0.32	(0.28,0.32]	chr7	337581	337	INTRON	INTRON	WASL	ENSG00000106299.8	ENST00000223023.5	protein_coding	protein_coding	protein_coding	protein_coding	16	183	2	1.50224	1.851405	2.20057	0.0275899	0.00104132	0.123904	0.0296504
chr1	211811773	211811873	631218	0	-	0.55	(0.515,0.57]	chr1	74654	182	INTRON	INTRON	LPGAT1	ENSG00000123684.13	ENST00000366997.9:ENST00000366996.1	protein_coding	protein_coding	protein_coding	protein_coding	6	46	2	1.58964	1.851385	2.11313	0.0408	0.0256725	0.1451	0.133676
chr4	1705893	1705993	2095161	0	-	0.52	(0.515,0.57]	chr4	207220	18	INTRON	INTRON	SLBP	ENSG00000163950.13	ENST00000489418.6:ENST00000429429.6:ENST00000318386.8:ENST00000483348.5:ENST00000488267.5:ENST00000480936.1	protein_coding	protein_coding	protein_coding	protein_coding	6	46	2	1.58964	1.851385	2.11313	0.0408	0.0256725	0.1451	0.133676
chr1	108697316	108697410	178181	0	+	0.37234	(0.35,0.378]	chr1	19359	7	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	PRPF38B	ENSG00000134186.12	ENST00000370025.9:ENST00000370022.9:ENST00000467302.5:ENST00000370021.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	117	2	1.65058	1.8512399999999998	2.0519	0.0209998	0.00332946	0.112251	0.0528877
chr3	197951665	197951746	1598745	0	+	0.320988	(0.32,0.35]	chr3	165706	1	SS5_PROX	SS5_PROX:INTRON	RPL35A	ENSG00000182899.17	ENST00000647248.2:ENST00000448864.6:ENST00000485439.5:ENST00000642387.1:ENST00000329092.12:ENST00000429437.5:ENST00000442341.5:ENST00000439255.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	19	171	2	1.19575	1.85121	2.50667	0.0397573	0.00118337	0.143072	0.031662
chrX	40718590	40718689	7806609	0	-	0.464646	(0.44,0.476]	chrX	796012	35	INTRON	INTRON	MED14	ENSG00000180182.11	ENST00000324817.6:ENST00000482034.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	46	2	1.55662	1.851175	2.14573	0.0688347	0.0238593	0.184298	0.129075
chr16	56937413	56937507	6361197	0	+	0.351064	(0.35,0.378]	chr16	610612	1	INTRON	INTRON	HERPUD1	ENSG00000051108.15	ENST00000439977.7:ENST00000300302.9:ENST00000344114.8:ENST00000565966.5:ENST00000570273.5:ENST00000379792.6:ENST00000569429.5:ENST00000563343.5:ENST00000563781.5:ENST00000568358.1:ENST00000564678.1:ENST00000563911.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	68	2	1.75561	1.851165	1.94672	0.0739399	0.00781737	0.190914	0.0788482
chr14	30968603	30968703	5857295	0	-	0.55	(0.515,0.57]	chr14	556508	42	INTRON	INTRON	STRN3	ENSG00000196792.12	ENST00000355683.9:ENST00000357479.10:ENST00000555358.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	14	109	2	1.3318	1.8511450000000003	2.37049	0.0433859	3.23495e-4	0.148115	0.0159645
chr7	131422765	131422865	3417399	0	+	0.33	(0.32,0.35]	chr7	319231	77	INTRON	INTRON	MKLN1	ENSG00000128585.18	ENST00000421797.6:ENST00000352689.11:ENST00000494785.5:ENST00000458153.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	64	2	1.32435	1.851145	2.37794	0.0498601	0.0459022	0.164984	0.156383
chr16	85590828	85590928	6415740	0	+	0.59	(0.57,1]	chr16	615470	341	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	8	37	2	1.7127	1.851115	1.98953	0.0182848	0.0180739	0.115629	0.107124
chr3	196065242	196065342	1897375	0	-	0.3	(0.28,0.32]	chr3	189936	4	SS5_PROX	SS5_PROX:INTRON	TFRC	ENSG00000072274.13	ENST00000420415.5:ENST00000360110.9:ENST00000392396.7:ENST00000464368.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	93	2	1.64432	1.851085	2.05785	0.0606133	0.00560246	0.171142	0.0678837
chr6	99415068	99415162	3166043	0	-	0.191489	[0,0.28]	chr6	295328	5	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PNISR	ENSG00000132424.17	ENST00000681615.1:ENST00000369239.10:ENST00000647811.1:ENST00000481229.2:ENST00000679525.1:ENST00000681611.1:ENST00000438806.5:ENST00000478777.5:ENST00000492294.5:ENST00000498075.1:ENST00000466057.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	58	2	1.49274	1.851005	2.20927	0.0794763	0.0592697	0.19979	0.189982
chr1	16950652	16950752	38429	0	+	0.45	(0.44,0.476]	chr1	4539	3	SS3_PROX	SS3_PROX:INTRON	CROCC	ENSG00000058453.17	ENST00000375541.10:ENST00000445545.6:ENST00000467938.5:ENST00000494191.6:ENST00000486318.1:ENST00000498688.5:ENST00000477773.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	12	101	2	1.44103	1.85094	2.26085	0.0244867	0.0039479	0.131869	0.0548259
chr15	50634081	50634181	6172749	0	-	0.47	(0.44,0.476]	chr15	588355	3	SS5_PROX	SS5_PROX:INTRON	TRPM7	ENSG00000092439.16	ENST00000646667.1:ENST00000560955.5	protein_coding	protein_coding	protein_coding	protein_coding	4	38	2	1.77101	1.850925	1.93084	0.0693975	0.0443175	0.184298	0.162302
chr22	21506750	21506849	7560158	0	-	0.464646	(0.44,0.476]	chr22	773318	143	INTRON	INTRON	PI4KAP2	ENSG00000183506.17	ENST00000450651.5:ENST00000467443.5:ENST00000479693.1:ENST00000476537.1:ENST00000491562.5	transcribed_unitary_pseudogene	retained_intron	transcribed_unitary_pseudogene	retained_intron:processed_transcript	4	38	2	1.77101	1.850925	1.93084	0.0693975	0.0443175	0.184298	0.162302
chr7	148876037	148876137	3670681	0	-	0.52	(0.515,0.57]	chr7	340632	48	INTRON	INTRON	EZH2	ENSG00000106462.12	ENST00000683292.1:ENST00000320356.7:ENST00000492143.5:ENST00000478654.5:ENST00000350995.6:ENST00000460911.5:ENST00000683744.1:ENST00000682317.1:ENST00000682263.1:ENST00000476773.5:ENST00000483967.5:ENST00000498186.5:ENST00000483012.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	16	119	2	1.62936	1.850895	2.07243	0.00983501	0.00172897	0.0838128	0.0384338
chr6	159690225	159690324	3253841	0	-	0.424242	(0.408,0.44]	chr6	302454	16	INTRON	INTRON	SOD2	ENSG00000112096.19	ENST00000538183.7:ENST00000546260.5:ENST00000367055.8:ENST00000367054.6:ENST00000546087.5:ENST00000444946.6:ENST00000337404.8:ENST00000541573.5:ENST00000540491.1:ENST00000545162.5:ENST00000535561.5:ENST00000537657.5:ENST00000401980.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	76	2	1.60344	1.85081	2.09818	0.0387506	0.00772939	0.160156	0.0757122
chr2	69834048	69834148	804790	0	+	0.33	(0.32,0.35]	chr2	89785	35	INTRON	INTRON	GMCL1	ENSG00000087338.5	ENST00000282570.4:ENST00000468386.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	82	2	1.47728	1.850785	2.22429	0.0274903	0.0226421	0.136819	0.117557
chr1	153859634	153859734	557132	0	-	0.29	(0.28,0.32]	chr1	65983	309	INTRON	INTRON	GATAD2B	ENSG00000143614.10	ENST00000368655.5:ENST00000634544.1:ENST00000634408.1:ENST00000634401.1:ENST00000634791.1:ENST00000636014.1:ENST00000637331.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	67	2	1.60333	1.850635	2.09794	0.0413158	0.0340483	0.161534	0.134863
chr20	47254319	47254419	7348476	0	-	0.47	(0.44,0.476]	chr20	749282	45	INTRON	INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000467200.6:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000468376.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	53	2	1.42812	1.85058	2.27304	0.0673866	0.0158915	0.183355	0.109464
chr1	52850167	52850267	104980	0	+	0.52	(0.515,0.57]	chr1	13720	68	INTRON	INTRON	ZYG11A	ENSG00000203995.10	ENST00000371532.5:ENST00000612017.4:ENST00000371528.2	protein_coding	protein_coding	protein_coding	protein_coding	7	54	2	1.63907	1.850565	2.06206	0.0350277	0.0135396	0.137535	0.101363
chr14	30934071	30934169	5856944	0	-	0.540816	(0.515,0.57]	chr14	556469	18	INTRON	INTRON	STRN3	ENSG00000196792.12	ENST00000355683.9:ENST00000357479.10:ENST00000555358.5:ENST00000556577.1:ENST00000554991.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	54	2	1.63907	1.850565	2.06206	0.0350277	0.0135396	0.137535	0.101363
chr2	61532978	61533075	1131178	0	-	0.515464	(0.515,0.57]	chr2	121638	35	INTRON	INTRON	XPO1	ENSG00000082898.19	ENST00000676553.1:ENST00000677556.1:ENST00000677814.1:ENST00000676771.1:ENST00000677803.1:ENST00000677239.1:ENST00000678790.1:ENST00000677928.1:ENST00000678182.1:ENST00000677150.1:ENST00000678172.1:ENST00000678360.1:ENST00000678081.1:ENST00000676889.1:ENST00000676783.1:ENST00000679035.1:ENST00000677422.1:ENST00000677417.1:ENST00000677813.1:ENST00000676999.1:ENST00000676667.1:ENST00000678263.1:ENST00000678877.1:ENST00000677933.1:ENST00000680228.1:ENST00000401558.7:ENST00000428210.5:ENST00000677290.1:ENST00000677850.1:ENST00000451765.6:ENST00000676789.1:ENST00000678741.1:ENST00000404992.6:ENST00000406957.5:ENST00000443240.5:ENST00000420673.6:ENST00000481214.1:ENST00000495003.1:ENST00000449444.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	55	2	1.48827	1.8505	2.21273	0.0301583	0.0196151	0.142572	0.109486
chr10	21542955	21543055	4404496	0	+	0.49	(0.476,0.515]	chr10	406427	12	INTRON	INTRON	MLLT10	ENSG00000078403.17	ENST00000651097.1:ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000377100.8:ENST00000377091.7:ENST00000650772.1:ENST00000651298.1:ENST00000652497.1:ENST00000495130.5:ENST00000377059.7:ENST00000621220.4:ENST00000476557.5:ENST00000462999.5:ENST00000430455.2:ENST00000479634.1:ENST00000480415.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	63	2	1.63187	1.850425	2.06898	0.037661	0.0137491	0.14058	0.10247
chr20	38431401	38431497	7342274	0	-	0.520833	(0.515,0.57]	chr20	748323	4	EXON_LNCRNA	EXON_LNCRNA:SS3_PROX:INTRON	SNHG17	ENSG00000196756.14	ENST00000654008.2:ENST00000658076.1:ENST00000662982.2:ENST00000456953.7:ENST00000654183.2:ENST00000663540.2:ENST00000651115.2:ENST00000660885.2:ENST00000662213.1:ENST00000665233.2:ENST00000666268.2:ENST00000665735.1:ENST00000660558.2:ENST00000691280.1:ENST00000658488.2:ENST00000688336.1:ENST00000668054.2:ENST00000690441.1:ENST00000655520.2:ENST00000687490.1:ENST00000664626.1:ENST00000658051.1:ENST00000668042.1:ENST00000686971.1:ENST00000663187.1:ENST00000657868.1:ENST00000689917.1:ENST00000664073.2:ENST00000653697.1:ENST00000656320.1:ENST00000686814.1:ENST00000417578.7:ENST00000654853.1:ENST00000436764.7:ENST00000668482.2:ENST00000671249.1:ENST00000655692.1:ENST00000693250.1:ENST00000691368.1:ENST00000693227.1:ENST00000690361.1:ENST00000670051.1:ENST00000667912.1:ENST00000693665.1:ENST00000665181.1:ENST00000687532.1:ENST00000691386.1:ENST00000693684.1:ENST00000666331.1:ENST00000669480.1:ENST00000658905.1:ENST00000661252.1:ENST00000669137.1:ENST00000688133.1:ENST00000689414.1:ENST00000691314.1:ENST00000669033.1:ENST00000686145.1:ENST00000653938.1:ENST00000656023.1:ENST00000692262.1:ENST00000414142.5:ENST00000670958.1:ENST00000657216.2:ENST00000664636.1:ENST00000657843.1:ENST00000666419.1:ENST00000413755.5:ENST00000424235.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	9	71	2	1.7407	1.85038	1.96006	0.0242347	0.00725161	0.130613	0.072984
chr1	24647932	24648023	45786	0	+	0.296703	(0.28,0.32]	chr1	5674	9	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	SRRM1	ENSG00000133226.18	ENST00000478890.5:ENST00000593639.5:ENST00000468822.5:ENST00000600523.5:ENST00000462710.5:ENST00000374389.8:ENST00000323848.14:ENST00000490543.5:ENST00000479034.5:ENST00000596378.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	17	134	2	1.10238	1.850275	2.59817	0.0479439	0.00753816	0.170997	0.0748659
chr2	9546037	9546135	1064394	0	-	0.408163	(0.378,0.408]	chr2	113556	19	INTRON	INTRON	ADAM17	ENSG00000151694.14	ENST00000310823.8:ENST00000648548.1:ENST00000649227.1:ENST00000648857.1:ENST00000647979.1:ENST00000647610.1:ENST00000650116.1:ENST00000647622.1:ENST00000649972.1:ENST00000650241.1:ENST00000618923.2:ENST00000478059.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	12	90	2	1.44038	1.850235	2.26009	0.0188651	0.0182819	0.115629	0.108861
chr16	23850368	23850467	6323902	0	+	0.454545	(0.44,0.476]	chr16	605693	126	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000498058.1:ENST00000645517.1:ENST00000498739.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	105	2	1.76961	1.85022	1.93083	0.00932249	0.00808024	0.0817766	0.0807319
chr4	79317218	79317313	2168720	0	-	0.452632	(0.44,0.476]	chr4	213819	7	UTR3	UTR3:EXON_MRNA:INTRON	NAA11	ENSG00000156269.5	ENST00000511542.1:ENST00000513733.1:ENST00000286794.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	12	105	2	1.76961	1.85022	1.93083	0.00932249	0.00808024	0.0817766	0.0807319
chr1	77622050	77622150	492851	0	-	0.45	(0.44,0.476]	chr1	58292	370	INTRON	INTRON	ZZZ3	ENSG00000036549.13	ENST00000370801.8:ENST00000481346.5:ENST00000476275.5:ENST00000370798.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	63	2	1.7965	1.850155	1.90381	0.0260626	0.0205549	0.122348	0.122153
chr12	53453096	53453189	5142893	0	+	0.376344	(0.35,0.378]	chr12	485374	4	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	PCBP2	ENSG00000197111.16	ENST00000546463.6:ENST00000437231.5:ENST00000447282.5:ENST00000359282.9:ENST00000549863.5:ENST00000359462.9:ENST00000550520.6:ENST00000552296.6:ENST00000550192.5:ENST00000551104.5	protein_coding	protein_coding	protein_coding	protein_coding	6	61	2	1.82281	1.850035	1.87726	0.0316938	0.0297629	0.144635	0.12908
chr4	94456736	94456826	1998430	0	+	0.355556	(0.35,0.378]	chr4	199548	3	UTR3	UTR3:EXON_MRNA:INTRON	PDLIM5	ENSG00000163110.15	ENST00000437932.5:ENST00000615540.4:ENST00000318007.9:ENST00000380180.7:ENST00000359265.8:ENST00000514830.5:ENST00000509333.5:ENST00000503974.5:ENST00000317968.9:ENST00000627587.2:ENST00000542407.5:ENST00000514743.5:ENST00000508216.5:ENST00000511767.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	50	2	1.71046	1.849875	1.98929	0.0441269	0.0417909	0.162255	0.147075
chr5	139330883	139330982	2499771	0	+	0.484848	(0.476,0.515]	chr5	238982	16	UTR3	UTR3:EXON_MRNA	MATR3	ENSG00000280987.4:ENSG00000015479.20	ENST00000394800.6:ENST00000394805.8	protein_coding	protein_coding	protein_coding	protein_coding	6	55	2	1.83961	1.849875	1.86014	0.0314489	0.0277606	0.137011	0.13151
chr9	91924727	91924827	4285013	0	-	0.51	(0.476,0.515]	chr9	393926	4	INTRON	INTRON	ROR2	ENSG00000169071.15	ENST00000375715.5:ENST00000375708.4:ENST00000495386.5:ENST00000546883.1:ENST00000476440.1:ENST00000493846.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	55	2	1.83961	1.849875	1.86014	0.0314489	0.0277606	0.137011	0.13151
chr22	24041953	24042043	7485471	0	+	0.5	(0.476,0.515]	chr22	763764	3	INTRON	INTRON	CABIN1	ENSG00000099991.18	ENST00000454754.5:ENST00000263119.10:ENST00000617531.4:ENST00000405822.6:ENST00000445422.5:ENST00000398319.6	protein_coding	protein_coding	protein_coding	protein_coding	6	53	2	1.50151	1.8498000000000001	2.19809	0.054954	0.020317	0.165463	0.121522
chr4	39714660	39714760	1953157	0	+	0.44	(0.408,0.44]	chr4	195630	159	INTRON	INTRON	UBE2K	ENSG00000078140.14	ENST00000510934.5:ENST00000261427.10:ENST00000438068.6:ENST00000513231.5:ENST00000503368.5:ENST00000445950.2:ENST00000510719.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	18	156	2	1.83848	1.849715	1.86095	0.00739981	0.00217765	0.0743092	0.0435144
chr15	63233168	63233268	6041193	0	+	0.45	(0.44,0.476]	chr15	575244	88	INTRON	INTRON	RAB8B	ENSG00000166128.13	ENST00000558990.5:ENST00000558119.5:ENST00000559927.1:ENST00000321437.9:ENST00000559006.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	46	2	1.77101	1.8496899999999998	1.92837	0.0693975	0.0222222	0.184298	0.124303
chr6	158585825	158585925	3021860	0	+	0.47	(0.44,0.476]	chr6	281815	4	SS5_PROX	SS5_PROX:INTRON	TMEM181	ENSG00000146433.10	ENST00000367090.4:ENST00000684151.1	protein_coding	protein_coding	protein_coding	protein_coding	5	46	2	1.77101	1.8496899999999998	1.92837	0.0693975	0.0222222	0.184298	0.124303
chr5	10365536	10365636	2317765	0	+	0.52	(0.515,0.57]	chr5	224612	105	INTRON	INTRON	MARCHF6	ENSG00000145495.16	ENST00000274140.10:ENST00000449913.6:ENST00000502795.5:ENST00000511802.5:ENST00000503788.5:ENST00000640713.1:ENST00000510872.5:ENST00000507863.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	56	2	1.49871	1.84957	2.20043	0.0770828	0.00392045	0.196285	0.0570863
chr1	15888257	15888357	35070	0	+	0.27	[0,0.28]	chr1	4272	112	INTRON	INTRON	SPEN	ENSG00000065526.12	ENST00000673875.1:ENST00000375759.8:ENST00000438066.1:ENST00000442985.1	protein_coding	protein_coding	protein_coding	protein_coding	8	108	2	1.83992	1.8495599999999999	1.8592	0.0250628	0.0212029	0.123192	0.12011
chr1	230252839	230252937	335943	0	+	0.459184	(0.44,0.476]	chr1	38980	19	INTRON	INTRON	GALNT2	ENSG00000143641.10	ENST00000366672.5	protein_coding	protein_coding	protein_coding	protein_coding	6	57	2	1.62896	1.8495599999999999	2.07016	0.0546679	0.0151815	0.182674	0.0994339
chr1	171496202	171496302	253321	0	+	0.5	(0.476,0.515]	chr1	30096	101	INTRON	INTRON	PRRC2C	ENSG00000117523.18	ENST00000647382.2:ENST00000367742.7:ENST00000476522.5:ENST00000338920.8:ENST00000467601.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	27	239	2	1.51179	1.84951	2.18723	0.0123651	1.73454e-4	0.0915816	0.0114162
chr17	17824901	17825001	6737499	0	-	0.58	(0.57,1]	chr17	661170	9	INTRON	INTRON	SREBF1	ENSG00000072310.18	ENST00000261646.11:ENST00000395757.6:ENST00000355815.8	protein_coding	protein_coding	protein_coding	protein_coding	5	24	2	1.52865	1.8494549999999998	2.17026	0.0730445	0.0220522	0.189414	0.123836
chr8	126285493	126285593	4051487	0	-	0.33	(0.32,0.35]	chr8	369353	1721	INTRON	INTRON	LINC00861	ENSG00000245164.9	ENST00000651482.1	lncRNA	lncRNA	lncRNA	lncRNA	10	98	2	1.25832	1.8494450000000002	2.44057	0.0563972	0.00466047	0.184423	0.0600108
chr1	235290234	235290334	663483	0	-	0.49	(0.476,0.515]	chr1	78552	291	INTRON	INTRON	ARID4B	ENSG00000054267.22	ENST00000349213.7:ENST00000366603.6:ENST00000264183.9:ENST00000421364.5:ENST00000491632.5:ENST00000418304.1:ENST00000466653.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	83	2	1.4553	1.8494100000000002	2.24352	0.0623645	0.0019689	0.175357	0.0411469
chr6	87237804	87237904	2914089	0	+	0.29	(0.28,0.32]	chr6	275317	39	INTRON	INTRON	ZNF292	ENSG00000188994.13	ENST00000369577.8:ENST00000518845.1:ENST00000339907.8:ENST00000496806.2:ENST00000466062.2	protein_coding	protein_coding	protein_coding	protein_coding	6	67	2	1.51776	1.84934	2.18092	0.0528371	0.0271832	0.178899	0.123904
chr16	57182480	57182578	6493073	0	-	0.408163	(0.378,0.408]	chr16	627985	8	INTRON	INTRON	PSME3IP1	ENSG00000172775.17	ENST00000309137.13:ENST00000566077.5:ENST00000567439.5:ENST00000564108.5:ENST00000562324.5:ENST00000567044.5:ENST00000565458.5:ENST00000562406.5:ENST00000566584.5:ENST00000568671.5:ENST00000565760.5:ENST00000566481.5:ENST00000570184.1:ENST00000566681.1:ENST00000565353.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	16	147	2	1.7475	1.8491650000000002	1.95083	0.00899766	0.00272585	0.0803272	0.0482154
chr11	47514494	47514579	4950013	0	-	0.4	(0.378,0.408]	chr11	464235	1	SS5_PROX	SS5_PROX:INTRON	CELF1:ENSG00000270072	ENSG00000149187.19:ENSG00000270072.1	ENST00000310513.10:ENST00000687097.1:ENST00000531165.5:ENST00000532048.5:ENST00000530151.5:ENST00000525841.5:ENST00000528434.5:ENST00000543178.5:ENST00000526419.1:ENST00000528538.5:ENST00000526277.1:ENST00000366360.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	6	56	2	1.52219	1.849135	2.17608	0.0531838	0.0218783	0.162538	0.123836
chr1	246285919	246286019	678494	0	-	0.36	(0.35,0.378]	chr1	79733	923	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000453676.5:ENST00000462422.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	52	2	1.7942	1.849125	1.90405	0.0482651	0.0378648	0.171852	0.141212
chr12	51145339	51145438	5325597	0	-	0.434343	(0.408,0.44]	chr12	507890	198	INTRON	INTRON	TFCP2	ENSG00000135457.11	ENST00000257915.10:ENST00000685804.1:ENST00000549867.5:ENST00000548115.5:ENST00000548108.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	46	2	1.81759	1.849105	1.88062	0.0534548	0.0316273	0.162935	0.144405
chr12	116267170	116267270	5425446	0	-	0.42	(0.408,0.44]	chr12	518291	291	INTRON	INTRON	MED13L	ENSG00000123066.9	ENST00000281928.9:ENST00000650226.1:ENST00000548743.2:ENST00000551197.2:ENST00000650375.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	46	2	1.81759	1.849105	1.88062	0.0534548	0.0316273	0.162935	0.144405
chr20	35732518	35732614	7336454	0	-	0.375	(0.35,0.378]	chr20	747475	5	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	RBM39	ENSG00000131051.24	ENST00000253363.11:ENST00000639702.1:ENST00000656873.1:ENST00000463004.5:ENST00000361162.10:ENST00000461283.5:ENST00000403542.6:ENST00000338163.10:ENST00000528062.7:ENST00000429968.5:ENST00000444878.5:ENST00000665058.1:ENST00000492779.5:ENST00000374038.7:ENST00000412738.5:ENST00000434927.5:ENST00000425184.5:ENST00000481037.5:ENST00000455343.5:ENST00000416108.5:ENST00000426951.5:ENST00000477334.1:ENST00000442447.5:ENST00000449489.5:ENST00000433027.5:ENST00000487604.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	40	378	2	1.73362	1.849075	1.96453	0.00358999	3.79702e-4	0.0533855	0.0176313
chr15	30653301	30653400	5992551	0	+	0.272727	[0,0.28]	chr15	569759	39	INTRON	INTRON	ENSG00000284906:ENSG00000285035	ENSG00000284906.3:ENSG00000285035.2	ENST00000685924.1:ENST00000563110.6:ENST00000642399.2:ENST00000566548.5	protein_coding	protein_coding	protein_coding:transcribed_unprocessed_pseudogene	protein_coding:nonsense_mediated_decay:processed_transcript:transcribed_unprocessed_pseudogene	4	56	2	1.84147	1.849065	1.85666	0.0660997	0.0610416	0.193277	0.181924
chr11	86039997	86040097	5014552	0	-	0.27	[0,0.28]	chr11	473022	80	INTRON	INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000630913.2:ENST00000528398.5:ENST00000356360.9:ENST00000534412.5:ENST00000531558.1:ENST00000531930.5:ENST00000532041.5:ENST00000525162.5:ENST00000528256.1:ENST00000528411.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	34	443	2	1.48637	1.849035	2.2117	0.0172508	3.32556e-4	0.104099	0.0162254
chr1	206640534	206640633	301693	0	+	0.414141	(0.408,0.44]	chr1	34677	11	INTRON	INTRON	DYRK3	ENSG00000143479.18	ENST00000367109.8:ENST00000367108.7:ENST00000489878.1:ENST00000649163.1:ENST00000441486.5:ENST00000367106.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	82	2	1.58026	1.84897	2.11768	0.0444624	0.00352982	0.149888	0.0546236
chr20	47604842	47604942	7282027	0	+	0.42	(0.408,0.44]	chr20	740475	212	INTRON	INTRON	NCOA3	ENSG00000124151.19	ENST00000371998.8:ENST00000372004.7:ENST00000371997.3	protein_coding	protein_coding	protein_coding	protein_coding	5	46	2	1.69566	1.84897	2.00228	0.0453922	0.0389732	0.164236	0.143072
chr7	36449119	36449210	3307619	0	+	0.417582	(0.408,0.44]	chr7	307204	3	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	ANLN	ENSG00000011426.11	ENST00000396068.6:ENST00000265748.7:ENST00000428612.5:ENST00000457743.1:ENST00000491782.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	46	2	1.69566	1.84897	2.00228	0.0453922	0.0389732	0.164236	0.143072
chr2	233851969	233852064	1343836	0	-	0.547368	(0.515,0.57]	chr2	140853	18	INTRON	INTRON	HJURP	ENSG00000123485.12	ENST00000432087.5:ENST00000441687.5:ENST00000411486.7:ENST00000414924.5:ENST00000454020.1:ENST00000453122.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	76	2	1.75695	1.848945	1.94094	0.016156	0.00719628	0.101453	0.0756137
chr1	19470005	19470105	388754	0	-	0.49	(0.476,0.515]	chr1	46394	203	INTRON	INTRON	CAPZB	ENSG00000077549.19	ENST00000264202.8:ENST00000264203.7:ENST00000375142.5:ENST00000482808.2:ENST00000674449.1:ENST00000674390.1:ENST00000375144.6:ENST00000674432.1:ENST00000433834.5:ENST00000459967.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	72	2	1.58972	1.84885	2.10798	0.0427022	0.00628634	0.148082	0.0722266
chr18	12966384	12966483	6876344	0	+	0.444444	(0.44,0.476]	chr18	681295	15	INTRON	INTRON	SEH1L	ENSG00000085415.16	ENST00000262124.15:ENST00000399892.7:ENST00000585730.5:ENST00000589446.5:ENST00000587761.1:ENST00000588251.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	105	2	1.84794	1.848725	1.84951	0.0127847	0.00567535	0.0926667	0.0678837
chr3	6548900	6549000	1356730	0	+	0.32	(0.28,0.32]	chr3	142508	358	INTRON	INTRON	ENSG00000189229	ENSG00000189229.12	ENST00000660158.1:ENST00000433639.1:ENST00000655754.1:ENST00000653839.1:ENST00000662846.1:ENST00000659876.1:ENST00000414438.2:ENST00000658468.1:ENST00000414603.1:ENST00000669512.1:ENST00000667028.1:ENST00000655541.1:ENST00000668643.1:ENST00000671568.1:ENST00000671036.1:ENST00000669798.1:ENST00000655753.1:ENST00000655856.1:ENST00000658398.1:ENST00000661518.1:ENST00000661279.1:ENST00000655495.1:ENST00000663041.1:ENST00000659827.1:ENST00000667716.1:ENST00000662508.1:ENST00000668416.1:ENST00000658133.1:ENST00000659651.1:ENST00000342990.4:ENST00000660054.1:ENST00000671370.1	lncRNA	lncRNA	lncRNA	lncRNA	16	183	2	1.68447	1.848725	2.01298	0.0111035	0.0046492	0.0876025	0.0629753
chr7	23526408	23526508	3503899	0	-	0.36	(0.35,0.378]	chr7	326970	36	INTRON	INTRON	TRA2A	ENSG00000164548.12	ENST00000297071.9:ENST00000392502.8:ENST00000538367.6:ENST00000621813.4:ENST00000494255.5:ENST00000474586.5:ENST00000490942.1:ENST00000448549.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	80	2	1.44934	1.8487149999999999	2.24809	0.0658369	0.00361961	0.181518	0.0554656
chr19	18511822	18511922	7152912	0	-	0.53	(0.515,0.57]	chr19	722886	360	INTRON	INTRON	ELL	ENSG00000105656.13	ENST00000262809.9:ENST00000594635.6:ENST00000596915.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	48	2	1.67758	1.8486799999999999	2.01978	0.0471728	0.0165522	0.168737	0.102621
chr16	54923248	54923347	6488475	0	-	0.444444	(0.44,0.476]	chr16	627574	69	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	CRNDE	ENSG00000245694.11	ENST00000613942.2:ENST00000661493.1:ENST00000668556.1:ENST00000660344.1:ENST00000502066.7:ENST00000559598.7:ENST00000688921.1:ENST00000501177.9:ENST00000661312.1:ENST00000689582.1:ENST00000558031.7:ENST00000689375.1:ENST00000691307.1:ENST00000657142.1:ENST00000557792.2:ENST00000559432.6:ENST00000655114.1:ENST00000560912.6:ENST00000558952.2	lncRNA	lncRNA	lncRNA	lncRNA	7	62	2	1.77101	1.8486099999999999	1.92621	0.0693975	0.00813281	0.184298	0.0810802
chr7	111415194	111415294	3622638	0	-	0.48	(0.476,0.515]	chr7	337108	224	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000452895.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding	6	56	2	1.68092	1.84855	2.01618	0.0474026	0.0180082	0.169265	0.106756
chr6	27847829	27847928	2839115	0	+	0.393939	(0.378,0.408]	chr6	266457	58	INTRON	INTRON	H2BC15	ENSG00000233822.6	ENST00000449538.3:ENST00000606613.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	66	2	1.60295	1.8484850000000002	2.09402	0.0422859	0.0126438	0.148082	0.0982897
chr18	194181	194279	6855187	0	+	0.295918	(0.28,0.32]	chr18	679527	9	INTRON	INTRON	USP14	ENSG00000101557.15	ENST00000582707.5:ENST00000400266.7:ENST00000261601.8:ENST00000578942.5:ENST00000383589.6:ENST00000583119.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	68	2	1.40698	1.84848	2.28998	0.0778529	0.0166401	0.196685	0.110511
chr1	158621250	158621345	569940	0	-	0.294737	(0.28,0.32]	chr1	68748	4	INTRON	INTRON	SPTA1	ENSG00000163554.15	ENST00000643759.2	protein_coding	protein_coding	protein_coding	protein_coding	12	120	2	1.36121	1.8484699999999998	2.33573	0.0316377	0.00764237	0.144449	0.0752681
chr7	139299136	139299236	3437283	0	+	0.3	(0.28,0.32]	chr7	320285	14	UTR3	UTR3:EXON_MRNA	UBN2	ENSG00000157741.15	ENST00000473989.8:ENST00000609762.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	75	2	1.59898	1.84846	2.09794	0.0340483	0.030453	0.143385	0.134863
chr1	65270621	65270721	135699	0	+	0.3	(0.28,0.32]	chr1	15346	53	INTRON	INTRON	DNAJC6	ENSG00000116675.16	ENST00000463018.5:ENST00000494710.6:ENST00000263441.11:ENST00000395325.7:ENST00000483402.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	90	2	1.69688	1.8483800000000001	1.99988	0.0228757	0.0219684	0.123836	0.118056
chr1	15913370	15913468	35324	0	+	0.367347	(0.35,0.378]	chr1	4284	17	INTRON	INTRON	SPEN	ENSG00000065526.12	ENST00000673875.1:ENST00000375759.8:ENST00000442985.1	protein_coding	protein_coding	protein_coding	protein_coding	9	84	2	1.46325	1.8481699999999999	2.23309	0.0346125	0.00930277	0.148144	0.0817766
chr3	33825186	33825240	1394654	0	+	0.351852	(0.35,0.378]	chr3	146051	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	PDCD6IP	ENSG00000170248.15	ENST00000457054.6:ENST00000648706.1:ENST00000435909.5:ENST00000413073.1:ENST00000307296.8:ENST00000477798.5:ENST00000484478.5:ENST00000494810.1:ENST00000459659.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	12	104	2	1.56109	1.848165	2.13524	0.0134069	0.0130865	0.101104	0.0934394
chr1	167980306	167980406	248929	0	+	0.39	(0.378,0.408]	chr1	29564	49	INTRON	INTRON	DCAF6	ENSG00000143164.16	ENST00000450548.5:ENST00000470919.5:ENST00000432587.6:ENST00000367843.7:ENST00000470721.5:ENST00000367840.4:ENST00000312263.10:ENST00000455334.5:ENST00000491067.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	11	103	2	1.2993	1.8480949999999998	2.39689	0.0619087	9.29812e-4	0.174514	0.0278746
chr16	81481973	81482073	6405369	0	+	0.47	(0.44,0.476]	chr16	615026	361	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8	protein_coding	protein_coding	protein_coding	protein_coding	8	71	2	1.56617	1.848045	2.12992	0.0338203	0.010975	0.134476	0.092635
chrX	136920251	136920349	7727570	0	+	0.397959	(0.378,0.408]	chrX	790760	57	INTRON	INTRON	TM9SF5P	ENSG00000234062.9	ENST00000650669.2:ENST00000687469.1:ENST00000431464.6:ENST00000685550.1:ENST00000685929.1:ENST00000424306.5:ENST00000687978.1:ENST00000688713.1:ENST00000693626.1:ENST00000686432.1:ENST00000693698.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	10	94	2	1.72469	1.848045	1.9714	0.0155	0.0109363	0.100909	0.0924799
chr20	34428909	34429009	7259778	0	+	0.44	(0.408,0.44]	chr20	737460	40	INTRON	INTRON	ITCH	ENSG00000078747.16	ENST00000374864.10:ENST00000535650.7:ENST00000670516.1:ENST00000665484.1:ENST00000664852.1:ENST00000660337.1:ENST00000665428.1:ENST00000262650.10:ENST00000662871.1:ENST00000665346.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	10	89	2	1.21994	1.847995	2.47605	0.076179	0.00116417	0.195346	0.0314524
chr12	121316382	121316482	5436804	0	-	0.46	(0.44,0.476]	chr12	519847	60	INTRON	INTRON	ANAPC5	ENSG00000089053.13	ENST00000261819.8:ENST00000535641.5:ENST00000541887.5:ENST00000534976.5:ENST00000441917.6:ENST00000539079.5:ENST00000544314.5:ENST00000535482.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	88	2	1.44103	1.8476650000000001	2.2543	0.0244867	0.00787184	0.131869	0.076155
chr8	108224531	108224628	4023019	0	-	0.329897	(0.32,0.35]	chr8	367643	26	INTRON	INTRON	EIF3E	ENSG00000104408.11	ENST00000678042.1:ENST00000678773.1:ENST00000677409.1:ENST00000676892.1:ENST00000523674.2:ENST00000677674.1:ENST00000220849.10:ENST00000678937.1:ENST00000677084.1:ENST00000676706.1:ENST00000518100.6:ENST00000677040.1:ENST00000676698.1:ENST00000522352.6:ENST00000521297.2:ENST00000677501.1:ENST00000519030.6:ENST00000519627.2:ENST00000518345.2:ENST00000522445.6:ENST00000678334.1:ENST00000678023.1:ENST00000678797.1:ENST00000677614.1:ENST00000676642.1:ENST00000677965.1:ENST00000678901.1:ENST00000678243.1:ENST00000676663.1:ENST00000679198.1:ENST00000521614.6:ENST00000678004.1:ENST00000678881.1:ENST00000677590.1:ENST00000677272.1:ENST00000676530.1:ENST00000677696.1:ENST00000519517.5:ENST00000519413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	74	2	1.81388	1.847645	1.88141	0.0371014	0.0161424	0.139201	0.109464
chr19	54461126	54461225	7099466	0	+	0.616162	(0.57,1]	chr19	712032	3	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	LENG8	ENSG00000167615.17	ENST00000616932.4:ENST00000326764.10:ENST00000376514.6:ENST00000610347.1:ENST00000421200.1	protein_coding	protein_coding	protein_coding	protein_coding	46	198	2	1.78288	1.84761	1.91234	3.29377e-4	2.95355e-4	0.0161352	0.0159583
chr19	2205834	2205933	6996599	0	+	0.474747	(0.44,0.476]	chr19	693473	27	INTRON	INTRON	DOT1L	ENSG00000104885.19	ENST00000398665.8:ENST00000686010.1	protein_coding	protein_coding	protein_coding	protein_coding	17	147	2	1.36518	1.847545	2.32991	0.0276663	4.93963e-4	0.123904	0.0201299
chr1	780271	780368	35	0	+	0.56701	(0.515,0.57]	chr1	6	8	INTRON	INTRON	LINC01409	ENSG00000237491.10	ENST00000412115.2:ENST00000655765.1:ENST00000670700.1:ENST00000657896.1:ENST00000429505.6:ENST00000434264.6:ENST00000457084.1:ENST00000658648.1:ENST00000656571.1:ENST00000669749.1:ENST00000665867.1:ENST00000665719.1:ENST00000666217.1:ENST00000651411.1:ENST00000589899.5:ENST00000609830.1:ENST00000443772.2	lncRNA	lncRNA	lncRNA	lncRNA	5	39	2	1.67758	1.8474750000000002	2.01737	0.0471728	0.0352218	0.168737	0.137535
chr17	21628866	21628966	6578442	0	+	0.45	(0.44,0.476]	chr17	639543	140	INTRON	INTRON	ENSG00000260157	ENSG00000260157.3	ENST00000618784.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	10	78	2	1.61203	1.8474	2.08277	0.0309998	0.012463	0.13151	0.0973643
chr10	101788121	101788220	4680656	0	-	0.434343	(0.408,0.44]	chr10	431944	2	INTRON	INTRON	OGA	ENSG00000198408.14	ENST00000439817.5:ENST00000361464.8:ENST00000357797.9:ENST00000482611.5:ENST00000494347.5:ENST00000479811.5:ENST00000461645.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	85	2	1.77132	1.847255	1.92319	0.0247322	0.00801449	0.12011	0.0802185
chr19	28530304	28530404	7166398	0	-	0.41	(0.408,0.44]	chr19	724189	621	INTRON	INTRON	ENSG00000283403:ENSG00000267243	ENSG00000283403.1:ENSG00000267243.6	ENST00000592347.5:ENST00000593065.5	lncRNA	lncRNA	lncRNA	lncRNA	19	140	2	1.35631	1.847235	2.33816	0.0152918	0.00289605	0.108569	0.0477416
chr5	65934899	65934999	2370927	0	+	0.29	(0.28,0.32]	chr5	228472	77	INTRON	INTRON	ERBIN	ENSG00000112851.15	ENST00000380943.6:ENST00000507490.1:ENST00000416865.6:ENST00000380935.5:ENST00000284037.10:ENST00000380938.6:ENST00000511297.5:ENST00000506030.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	17	168	2	1.51849	1.84714	2.17579	0.0111195	0.00757046	0.0933824	0.0749063
chr7	130076405	130076505	3413653	0	+	0.27	[0,0.28]	chr7	319098	52	INTRON	INTRON	KLHDC10	ENSG00000128607.14	ENST00000335420.10:ENST00000463413.1:ENST00000468226.1	protein_coding	protein_coding	protein_coding	protein_coding	7	86	2	1.59519	1.8470900000000001	2.09899	0.0371453	0.0331097	0.145786	0.139304
chr3	160405185	160405283	1544653	0	+	0.336735	(0.32,0.35]	chr3	160690	1	INTRON	INTRON	SMC4	ENSG00000113810.16	ENST00000472282.5:ENST00000472991.5:ENST00000357388.8:ENST00000469762.5:ENST00000468653.5:ENST00000467468.5:ENST00000469858.5:ENST00000489573.5:ENST00000462787.5:ENST00000344722.5:ENST00000470240.5:ENST00000497984.5:ENST00000487747.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	62	2	1.80487	1.8469799999999998	1.88909	0.0553737	0.0210603	0.165463	0.122559
chr16	89455588	89455688	6543252	0	-	0.46	(0.44,0.476]	chr16	634281	239	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	70	2	1.74644	1.846835	1.94723	0.0227424	0.0165016	0.117618	0.110334
chr11	770497	770597	4889660	0	-	0.59	(0.57,1]	chr11	457805	2	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GATD1	ENSG00000177225.17	ENST00000465313.6:ENST00000319863.13:ENST00000397472.6:ENST00000528309.5:ENST00000354286.8:ENST00000526325.5:ENST00000526650.5:ENST00000524550.5:ENST00000532320.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	17	76	2	1.74547	1.84678	1.94809	0.00797811	0.00116403	0.0765891	0.0314524
chr1	1858075	1858175	362511	0	-	0.36	(0.35,0.378]	chr1	42311	180	INTRON	INTRON	GNB1	ENSG00000078369.18	ENST00000610897.4:ENST00000615252.4:ENST00000378609.9:ENST00000439272.6:ENST00000434686.6:ENST00000472614.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	50	2	1.81767	1.846765	1.87586	0.0640429	0.0268864	0.177882	0.135275
chr6	2962994	2963094	3047644	0	-	0.37	(0.35,0.378]	chr6	283590	2	SS5_PROX	SS5_PROX:INTRON	SERPINB6	ENSG00000124570.21	ENST00000643098.1:ENST00000380546.7:ENST00000380539.7:ENST00000380529.5:ENST00000649845.1:ENST00000644178.1:ENST00000612421.3:ENST00000616722.4:ENST00000642543.1:ENST00000644388.1:ENST00000380520.6:ENST00000645580.1:ENST00000644693.1:ENST00000644828.1:ENST00000646775.1:ENST00000645421.1:ENST00000643227.1:ENST00000646688.1:ENST00000644777.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	50	2	1.81767	1.846765	1.87586	0.0640429	0.0268864	0.177882	0.135275
chr3	183729649	183729749	1580613	0	+	0.42	(0.408,0.44]	chr3	163056	4	INTRON	INTRON	YEATS2	ENSG00000163872.16	ENST00000305135.10	protein_coding	protein_coding	protein_coding	protein_coding	13	113	2	1.81418	1.84661	1.87904	0.011526	0.00511669	0.0889104	0.064713
chr16	211468	211568	6426008	0	-	0.42	(0.408,0.44]	chr16	617437	18	INTRON	INTRON	LUC7L	ENSG00000007392.17	ENST00000337351.8:ENST00000426094.5:ENST00000397783.5:ENST00000629543.2:ENST00000490762.5:ENST00000293872.13:ENST00000419516.5:ENST00000397780.5:ENST00000418978.5:ENST00000430864.5:ENST00000443357.5:ENST00000494366.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	71	2	1.49789	1.846565	2.19524	0.0390091	0.00990486	0.161009	0.0838372
chr9	131202515	131202614	4216427	0	+	0.434343	(0.408,0.44]	chr9	386673	4	INTRON	INTRON	NUP214	ENSG00000126883.19	ENST00000695497.1:ENST00000695498.1:ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000524578.6:ENST00000453861.6:ENST00000483497.6:ENST00000695500.1:ENST00000650694.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	45	380	2	1.36218	1.8465449999999999	2.33091	0.0106486	4.90426e-5	0.0861859	0.00572797
chr10	117357379	117357478	4702527	0	-	0.353535	(0.35,0.378]	chr10	433752	159	INTRON	INTRON	PDZD8	ENSG00000165650.12	ENST00000334464.7:ENST00000489491.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	50	2	1.65083	1.846535	2.04224	0.0521072	0.0363073	0.177022	0.138959
chr18	9377151	9377251	6870868	0	+	0.36	(0.35,0.378]	chr18	680672	167	INTRON	INTRON	TWSG1	ENSG00000128791.12	ENST00000583147.5:ENST00000262120.10:ENST00000581641.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	50	2	1.65083	1.846535	2.04224	0.0521072	0.0363073	0.177022	0.138959
chr21	22284705	22284805	7385215	0	+	0.36	(0.35,0.378]	chr21	752727	715	INTRON	INTRON	ENSG00000226043	ENSG00000226043.2	ENST00000667099.1:ENST00000654607.1:ENST00000444130.1	lncRNA	lncRNA	lncRNA	lncRNA	5	50	2	1.65083	1.846535	2.04224	0.0521072	0.0363073	0.177022	0.138959
chr16	89412863	89412963	6542818	0	-	0.58	(0.57,1]	chr16	634259	3	SS3_PROX	SS3_PROX:INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000647238.1:ENST00000644045.1:ENST00000643147.1:ENST00000644139.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	20	2	1.77365	1.8465099999999999	1.91937	0.0670385	0.0468438	0.183051	0.167716
chr21	46197862	46197962	7470553	0	-	0.32	(0.28,0.32]	chr21	761464	12	INTRON	INTRON	LSS	ENSG00000160285.15	ENST00000356396.8:ENST00000397728.8:ENST00000457828.6:ENST00000522411.5	protein_coding	protein_coding	protein_coding	protein_coding	23	257	2	1.443	1.846505	2.25001	0.0206231	4.91165e-4	0.110999	0.0200459
chr14	23324393	23324488	5656988	0	+	0.515789	(0.515,0.57]	chr14	539473	2	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	BCL2L2-PABPN1:PABPN1	ENSG00000258643.6:ENSG00000100836.11	ENST00000678502.1:ENST00000553781.5:ENST00000557008.2:ENST00000216727.9:ENST00000397276.6:ENST00000556821.5:ENST00000553960.1:ENST00000555295.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	12	90	2	1.2959	1.846495	2.39709	0.0487278	7.86638e-4	0.154287	0.0258324
chr12	110739067	110739167	5411496	0	-	0.52	(0.515,0.57]	chr12	516744	37	INTRON	INTRON	PPP1CC	ENSG00000186298.12	ENST00000335007.10:ENST00000340766.9:ENST00000550991.5:ENST00000551676.5:ENST00000620030.1:ENST00000551690.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:processed_transcript	9	66	2	1.47127	1.846465	2.22166	0.0333563	0.00735516	0.134145	0.0765982
chr11	59800654	59800754	4795606	0	+	0.37	(0.35,0.378]	chr11	444019	4	SS3_PROX	SS3_PROX:INTRON	STX3	ENSG00000166900.17	ENST00000641815.1:ENST00000337979.9:ENST00000533637.5:ENST00000633708.1:ENST00000529177.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	14	135	2	1.29836	1.8464200000000002	2.39448	0.047099	5.99458e-4	0.152283	0.0223262
chr16	58604604	58604704	6496130	0	-	0.45	(0.44,0.476]	chr16	628638	47	INTRON	INTRON	CNOT1	ENSG00000125107.19	ENST00000317147.10:ENST00000569240.5:ENST00000567188.5:ENST00000441024.6:ENST00000565605.5:ENST00000564557.1:ENST00000569916.1:ENST00000565697.1:ENST00000569020.5:ENST00000568158.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	63	2	1.42812	1.84632	2.26452	0.0673866	0.00654074	0.183355	0.0735539
chr22	21853926	21854026	7561249	0	-	0.38	(0.378,0.408]	chr22	773388	457	INTRON	INTRON	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	17	149	2	1.52697	1.84631	2.16565	0.0111167	0.00255084	0.0933605	0.0449097
chr12	56113272	56113369	5145679	0	+	0.340206	(0.32,0.35]	chr12	486195	5	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	PA2G4	ENSG00000170515.14	ENST00000552766.5:ENST00000303305.11	protein_coding	protein_coding	protein_coding	protein_coding	16	171	2	1.1701	1.8462399999999999	2.52238	0.0518461	6.06924e-4	0.176696	0.0226059
chr22	19099770	19099870	7551788	0	-	0.47	(0.44,0.476]	chr22	771903	99	INTRON	INTRON	DGCR2	ENSG00000070413.20	ENST00000537045.5:ENST00000545799.5:ENST00000263196.12:ENST00000389262.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	63	2	1.56252	1.8462199999999998	2.12992	0.0465207	0.010975	0.151387	0.092635
chr2	70225393	70225493	1152227	0	-	0.37	(0.35,0.378]	chr2	123076	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	C2orf42:TIA1	ENSG00000115998.8:ENSG00000116001.17	ENST00000470096.1:ENST00000415783.6:ENST00000433529.7:ENST00000282574.8:ENST00000445587.5:ENST00000454815.6:ENST00000477415.5:ENST00000496096.5:ENST00000416149.6:ENST00000474809.6:ENST00000477044.6:ENST00000361692.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	104	2	1.81512	1.8462100000000001	1.8773	0.0184031	0.00699907	0.108834	0.0754576
chr7	66685159	66685259	3324918	0	+	0.46	(0.44,0.476]	chr7	309218	4	SS3_PROX	SS3_PROX:INTRON	ENSG00000226824:RABGEF1	ENSG00000226824.8:ENSG00000154710.18	ENST00000693151.1:ENST00000607882.5	protein_coding	nonsense_mediated_decay	protein_coding:lncRNA	nonsense_mediated_decay:lncRNA	8	72	2	1.64563	1.8461849999999997	2.04674	0.0363922	0.00803423	0.138959	0.0803474
chrX	44941483	44941583	7649285	0	+	0.51	(0.476,0.515]	chrX	782726	671	INTRON	INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000675440.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000621147.5:ENST00000475233.1:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	98	2	1.59365	1.846165	2.09868	0.0306944	0.00250696	0.13151	0.0464713
chr21	46265824	46265924	7471221	0	-	0.59	(0.57,1]	chr21	761655	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MCM3AP	ENSG00000160294.11	ENST00000397708.1:ENST00000291688.6:ENST00000486937.5:ENST00000496607.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	29	2	1.67986	1.8460100000000002	2.01216	0.0496395	0.0163389	0.174685	0.101571
chr9	92256385	92256483	4286950	0	-	0.591837	(0.57,1]	chr9	394155	31	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	IARS1	ENSG00000196305.19	ENST00000375643.7:ENST00000443024.7:ENST00000447699.7:ENST00000683537.1:ENST00000684726.1:ENST00000683192.1:ENST00000683565.1:ENST00000682756.1:ENST00000684542.1:ENST00000683793.1:ENST00000683817.1:ENST00000682141.1:ENST00000682893.1:ENST00000684557.1:ENST00000498025.2:ENST00000682156.1:ENST00000627121.3:ENST00000683469.1:ENST00000683495.1:ENST00000682578.1:ENST00000682533.1:ENST00000472894.2:ENST00000684757.1:ENST00000684445.1:ENST00000683376.1:ENST00000683679.1:ENST00000683119.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	29	2	1.67986	1.8460100000000002	2.01216	0.0496395	0.0163389	0.174685	0.101571
chr6	161005942	161006042	3024632	0	+	0.48	(0.476,0.515]	chr6	282304	135	INTRON	INTRON	MAP3K4	ENSG00000085511.20	ENST00000366919.6:ENST00000392142.9:ENST00000542952.5:ENST00000366920.6:ENST00000348824.11:ENST00000544041.5:ENST00000490904.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	76	2	1.59493	1.8459499999999998	2.09697	0.0213255	0.0136924	0.123504	0.0949306
chr16	19764811	19764911	6315091	0	+	0.46	(0.44,0.476]	chr16	604531	3	INTRON	INTRON	IQCK	ENSG00000174628.17	ENST00000320394.10:ENST00000308214.13:ENST00000568126.5:ENST00000695302.1:ENST00000564955.5:ENST00000564186.5:ENST00000568300.6:ENST00000561839.5:ENST00000561935.5:ENST00000562762.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	91	2	1.38203	1.8459250000000003	2.30982	0.058781	0.00140739	0.167915	0.0344267
chr5	32170448	32170548	2597477	0	-	0.37	(0.35,0.378]	chr5	246744	262	INTRON	INTRON	GOLPH3	ENSG00000113384.14	ENST00000265070.7:ENST00000503610.5:ENST00000512668.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	12	111	2	1.38988	1.8459150000000002	2.30195	0.0304557	0.00377584	0.143385	0.0540736
chr17	32156387	32156486	6596958	0	+	0.494949	(0.476,0.515]	chr17	641728	133	INTRON	INTRON	RHOT1	ENSG00000126858.19	ENST00000333942.10:ENST00000358365.7:ENST00000583994.5:ENST00000545287.7:ENST00000354266.7:ENST00000581031.5:ENST00000581094.5:ENST00000578205.5:ENST00000580976.1:ENST00000394692.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	10	91	2	1.36967	1.8458199999999998	2.32197	0.0605132	0.00133705	0.171085	0.0335955
chr2	61507655	61507754	1130910	0	-	0.494949	(0.476,0.515]	chr2	121597	50	INTRON	INTRON	XPO1	ENSG00000082898.19	ENST00000677110.1:ENST00000676553.1:ENST00000677556.1:ENST00000677814.1:ENST00000676771.1:ENST00000677803.1:ENST00000677239.1:ENST00000678790.1:ENST00000677928.1:ENST00000678182.1:ENST00000677150.1:ENST00000678172.1:ENST00000678360.1:ENST00000678081.1:ENST00000676889.1:ENST00000676783.1:ENST00000679035.1:ENST00000677422.1:ENST00000677417.1:ENST00000677813.1:ENST00000676999.1:ENST00000676667.1:ENST00000678263.1:ENST00000678877.1:ENST00000677933.1:ENST00000680228.1:ENST00000677289.1:ENST00000677190.1:ENST00000401558.7:ENST00000428210.5:ENST00000677290.1:ENST00000677850.1:ENST00000451765.6:ENST00000676789.1:ENST00000678741.1:ENST00000404992.6:ENST00000406957.5:ENST00000443240.5:ENST00000476585.5:ENST00000468259.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	81	2	1.57103	1.845805	2.12058	0.0307896	0.00686728	0.143385	0.071646
chr3	15771388	15771487	1623554	0	-	0.444444	(0.44,0.476]	chr3	168009	47	INTRON	INTRON	ANKRD28	ENSG00000206560.12	ENST00000399451.6:ENST00000624145.3:ENST00000683139.1:ENST00000412318.5:ENST00000497037.5:ENST00000451422.1:ENST00000498524.5:ENST00000439830.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	80	2	1.83459	1.845775	1.85696	0.0198542	0.0107727	0.109608	0.0920575
chr19	1426946	1427046	6995296	0	+	0.44	(0.408,0.44]	chr19	693206	7	EXON_MRNA	EXON_MRNA:INTRON	DAZAP1	ENSG00000071626.17	ENST00000336761.10:ENST00000233078.9:ENST00000592522.5:ENST00000586579.5:ENST00000587079.5:ENST00000592453.2:ENST00000589484.5:ENST00000585485.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	27	237	2	1.57725	1.845685	2.1141200000000002	0.00880548	3.11613e-4	0.0790863	0.0158489
chr1	110344248	110344347	182393	0	+	0.292929	(0.28,0.32]	chr1	20236	16	INTRON	INTRON	RBM15	ENSG00000162775.17	ENST00000652747.1:ENST00000618772.4:ENST00000487146.8:ENST00000369784.9:ENST00000650953.2:ENST00000654015.1:ENST00000617047.1	protein_coding	protein_coding	protein_coding	protein_coding	7	81	2	1.72279	1.8456000000000001	1.96841	0.0496859	0.0124199	0.156383	0.0973643
chr14	101817426	101817526	5819058	0	+	0.51	(0.476,0.515]	chr14	551841	70	INTRON	INTRON	PPP2R5C	ENSG00000078304.20	ENST00000694906.1:ENST00000422945.6:ENST00000554442.5:ENST00000556068.5:ENST00000328724.9:ENST00000554504.1:ENST00000553890.1:ENST00000350249.7:ENST00000557621.5:ENST00000556946.1:ENST00000556307.5:ENST00000553730.5:ENST00000557714.1:ENST00000334743.9:ENST00000445439.7:ENST00000557095.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	52	2	1.63962	1.84558	2.05154	0.0346854	0.0336015	0.148144	0.134145
chr19	10755396	10755488	7014143	0	+	0.478261	(0.476,0.515]	chr19	696921	4	EXON_LNCRNA	EXON_LNCRNA:INTRON	DNM2	ENSG00000079805.19	ENST00000683738.1:ENST00000682285.1:ENST00000682524.1:ENST00000355667.11:ENST00000389253.9:ENST00000585892.5:ENST00000359692.10:ENST00000408974.8:ENST00000586939.5:ENST00000588976.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	52	2	1.63962	1.84558	2.05154	0.0346854	0.0336015	0.148144	0.134145
chr7	100320117	100320216	3586609	0	-	0.50505	(0.476,0.515]	chr7	334331	10	EXON_LNCRNA	EXON_LNCRNA:INTRON	PMS2P1	ENSG00000078319.11	ENST00000685724.1:ENST00000692351.1:ENST00000685541.1:ENST00000676200.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	9	80	2	1.69413	1.8455599999999999	1.99699	0.0200655	0.0110277	0.121043	0.0873897
chr6	4044816	4044914	2789938	0	+	0.357143	(0.35,0.378]	chr6	263511	4	INTRON	INTRON	PRPF4B	ENSG00000112739.17	ENST00000480058.5:ENST00000337659.11:ENST00000481109.5:ENST00000463634.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	84	2	1.69756	1.845535	1.99351	0.020841	0.0149371	0.111648	0.107462
chr1	32791852	32791950	415904	0	-	0.469388	(0.44,0.476]	chr1	50188	2	INTRON	INTRON	YARS1	ENSG00000134684.13	ENST00000373477.9:ENST00000676297.1:ENST00000674654.1:ENST00000674629.1:ENST00000675785.2:ENST00000481895.6:ENST00000616261.2:ENST00000466052.1:ENST00000470377.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	38	2	1.83899	1.8452250000000001	1.85146	0.0589734	0.0545846	0.182529	0.167915
chr20	17960348	17960445	7320484	0	-	0.474227	(0.44,0.476]	chr20	745328	30	INTRON	INTRON	SNX5	ENSG00000089006.17	ENST00000377768.7:ENST00000490175.5:ENST00000483485.5:ENST00000377759.9:ENST00000431277.5:ENST00000419004.2:ENST00000474883.5:ENST00000475716.5:ENST00000469704.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	38	2	1.83899	1.8452250000000001	1.85146	0.0589734	0.0545846	0.182529	0.167915
chr3	14414614	14414714	1369512	0	+	0.47	(0.44,0.476]	chr3	144312	34	INTRON	INTRON	SLC6A6	ENSG00000131389.18	ENST00000613060.4:ENST00000618278.4:ENST00000610642.4:ENST00000649500.1:ENST00000622186.5:ENST00000621751.4:ENST00000613930.4:ENST00000622176.4:ENST00000615188.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	38	2	1.83899	1.8452250000000001	1.85146	0.0589734	0.0545846	0.182529	0.167915
chr1	28506626	28506719	57173	0	+	0.44086	(0.44,0.476]	chr1	7378	4	EXON_MRNA	EXON_MRNA:INTRON	RCC1:SNHG3	ENSG00000180198.17:ENSG00000242125.3	ENST00000398958.6:ENST00000649185.1:ENST00000413987.1:ENST00000427469.5:ENST00000683442.1:ENST00000447507.1:ENST00000434290.6:ENST00000373833.10:ENST00000437681.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	34	298	2	1.77018	1.84521	1.92024	0.00164022	0.00111379	0.0373706	0.0306328
chr7	6482989	6483089	3478358	0	-	0.29	(0.28,0.32]	chr7	325475	4	SS3_PROX	SS3_PROX:INTRON	DAGLB:KDELR2	ENSG00000164535.15:ENSG00000136240.10	ENST00000436575.5:ENST00000463747.1:ENST00000258739.9:ENST00000490996.1:ENST00000382267.3:ENST00000462052.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	14	153	2	1.24672	1.845135	2.44355	0.0546727	9.82119e-4	0.165463	0.0288015
chr16	16631969	16632069	6312183	0	+	0.37	(0.35,0.378]	chr16	604102	191	INTRON	INTRON	ENSG00000260126:ENSG00000287905	ENSG00000260126.2:ENSG00000287905.1	ENST00000567465.2:ENST00000660246.1	lncRNA	lncRNA	lncRNA	lncRNA	7	71	2	1.81422	1.84504	1.87586	0.0268864	0.0226581	0.135275	0.117618
chr15	78876886	78876986	6069579	0	+	0.37	(0.35,0.378]	chr15	578187	3	SS5_PROX	SS5_PROX:INTRON	MORF4L1	ENSG00000185787.15	ENST00000379535.8:ENST00000559697.5:ENST00000331268.9:ENST00000557961.5:ENST00000559930.5:ENST00000426013.7:ENST00000558746.5:ENST00000558893.5:ENST00000558830.5:ENST00000558522.5:ENST00000559619.5:ENST00000559345.5:ENST00000561171.5:ENST00000558502.5:ENST00000559258.5:ENST00000559690.5:ENST00000559158.5:ENST00000560422.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	12	117	2	1.79087	1.844975	1.89908	0.0126818	0.00658205	0.0926667	0.0737338
chr1	204405606	204405703	621978	0	-	0.268041	[0,0.28]	chr1	73936	24	UTR3	UTR3:EXON_MRNA:INTRON	PPP1R15B	ENSG00000158615.10	ENST00000693720.1:ENST00000367188.5:ENST00000689921.1:ENST00000690849.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	16	182	2	1.33072	1.84484	2.35896	0.0287935	0.00478185	0.140089	0.0602209
chr7	128503218	128503318	3407346	0	+	0.4	(0.378,0.408]	chr7	318329	6	UTR3	UTR3:EXON_MRNA	METTL2B	ENSG00000165055.16	ENST00000262432.13:ENST00000480046.5	protein_coding	protein_coding	protein_coding	protein_coding	10	89	2	1.46092	1.8447550000000001	2.22859	0.0314415	0.00763308	0.13151	0.0777238
chr1	205749456	205749556	623883	0	-	0.74	(0.57,1]	chr1	74199	1	SS5_PROX	SS5_PROX:INTRON	NUCKS1	ENSG00000069275.13	ENST00000367142.5	protein_coding	protein_coding	protein_coding	protein_coding	5	24	2	1.63919	1.844725	2.05026	0.05421	0.0321326	0.164887	0.145026
chr2	169569752	169569845	1261659	0	-	0.580645	(0.57,1]	chr2	133675	1	INTRON	INTRON	FASTKD1	ENSG00000138399.18	ENST00000453153.7:ENST00000453929.6:ENST00000445210.1:ENST00000438035.5:ENST00000417376.5	protein_coding	protein_coding	protein_coding	protein_coding	5	24	2	1.63919	1.844725	2.05026	0.05421	0.0321326	0.164887	0.145026
chr7	138461143	138461222	3434649	0	+	0.670886	(0.57,1]	chr7	319956	2	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	TRIM24	ENSG00000122779.18	ENST00000343526.9:ENST00000415680.6:ENST00000497516.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	24	2	1.63919	1.844725	2.05026	0.05421	0.0321326	0.164887	0.145026
chr2	61507358	61507457	1130907	0	-	0.464646	(0.44,0.476]	chr2	121597	47	INTRON	INTRON	XPO1	ENSG00000082898.19	ENST00000677110.1:ENST00000676553.1:ENST00000677556.1:ENST00000677814.1:ENST00000676771.1:ENST00000677803.1:ENST00000677239.1:ENST00000678790.1:ENST00000677928.1:ENST00000678182.1:ENST00000677150.1:ENST00000678172.1:ENST00000678360.1:ENST00000678081.1:ENST00000676889.1:ENST00000676783.1:ENST00000679035.1:ENST00000677422.1:ENST00000677417.1:ENST00000677813.1:ENST00000676999.1:ENST00000676667.1:ENST00000678263.1:ENST00000678877.1:ENST00000677933.1:ENST00000680228.1:ENST00000677289.1:ENST00000677190.1:ENST00000401558.7:ENST00000428210.5:ENST00000677290.1:ENST00000677850.1:ENST00000451765.6:ENST00000676789.1:ENST00000678741.1:ENST00000404992.6:ENST00000406957.5:ENST00000443240.5:ENST00000476585.5:ENST00000468259.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	30	241	2	1.62397	1.8446799999999999	2.06539	0.0026944	0.00159849	0.0479115	0.0364932
chr20	62918581	62918680	7362375	0	-	0.323232	(0.32,0.35]	chr20	751210	38	INTRON	INTRON	DIDO1	ENSG00000101191.17	ENST00000266070.8:ENST00000395343.6:ENST00000395340.5:ENST00000370371.8:ENST00000370368.5:ENST00000354665.8	protein_coding	protein_coding	protein_coding	protein_coding	6	64	2	1.60939	1.84462	2.07985	0.0439266	0.0303092	0.14937	0.143025
chr5	160102352	160102452	2759629	0	-	0.45	(0.44,0.476]	chr5	260436	79	INTRON	INTRON	PWWP2A	ENSG00000170234.13	ENST00000456329.7:ENST00000523662.1:ENST00000307063.9:ENST00000520662.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	46	2	1.61163	1.844615	2.0776	0.0598319	0.0292951	0.169278	0.141862
chr17	82816531	82816630	6694859	0	+	0.464646	(0.44,0.476]	chr17	654903	12	INTRON	INTRON	TBCD	ENSG00000141556.22	ENST00000682479.1:ENST00000682722.1:ENST00000684464.1:ENST00000684544.1:ENST00000681983.1:ENST00000684361.1:ENST00000683184.1:ENST00000683282.1:ENST00000684408.1:ENST00000355528.9:ENST00000683444.1:ENST00000684776.1:ENST00000683041.1:ENST00000684760.1:ENST00000684349.1:ENST00000682213.1:ENST00000683009.1:ENST00000682921.1:ENST00000539345.6:ENST00000684000.1:ENST00000684188.1:ENST00000684429.1:ENST00000682610.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	89	2	1.63371	1.844585	2.05546	0.0271664	0.00467486	0.123904	0.0631417
chr1	11802287	11802380	378909	0	-	0.473118	(0.44,0.476]	chr1	44480	5	INTRON	INTRON	MTHFR	ENSG00000177000.13	ENST00000376590.9:ENST00000376592.6:ENST00000376583.7:ENST00000376585.6:ENST00000641747.1:ENST00000641805.1:ENST00000641446.1:ENST00000423400.7:ENST00000641407.1:ENST00000641759.1:ENST00000641721.1:ENST00000376486.3:ENST00000641909.1:ENST00000641437.1:ENST00000418034.1:ENST00000431243.6:ENST00000642002.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	89	2	1.72944	1.84453	1.95962	0.0196145	0.00707371	0.109486	0.0754923
chr17	21617518	21617618	6578328	0	+	0.44	(0.408,0.44]	chr17	639543	26	INTRON	INTRON	ENSG00000260157	ENSG00000260157.3	ENST00000618784.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	7	64	2	1.64062	1.8445200000000002	2.04842	0.0557275	0.00797555	0.165463	0.0798772
chr8	26319600	26319700	3716377	0	+	0.42	(0.408,0.44]	chr8	345372	146	INTRON	INTRON	PPP2R2A	ENSG00000221914.11	ENST00000380737.8:ENST00000520329.5:ENST00000518254.5:ENST00000524169.5:ENST00000518397.5:ENST00000522535.5:ENST00000665949.1:ENST00000522150.5:ENST00000523473.5:ENST00000521095.5:ENST00000660435.1:ENST00000523925.5:ENST00000524099.5:ENST00000315985.7:ENST00000519636.5:ENST00000522482.5:ENST00000521557.5:ENST00000519439.5:ENST00000521484.5:ENST00000523964.5:ENST00000667651.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	54	2	1.24904	1.84446	2.43988	0.055886	0.0398236	0.18407	0.143072
chr12	53457191	53457290	5142940	0	+	0.444444	(0.44,0.476]	chr12	485394	8	INTRON	INTRON	PCBP2	ENSG00000197111.16	ENST00000546463.6:ENST00000437231.5:ENST00000447282.5:ENST00000359282.9:ENST00000549863.5:ENST00000359462.9:ENST00000550520.6:ENST00000552296.6:ENST00000551104.5:ENST00000552819.5:ENST00000455667.7:ENST00000439930.7:ENST00000548933.5:ENST00000546652.6:ENST00000562264.5:ENST00000548190.1:ENST00000550585.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	15	130	2	1.55201	1.8444099999999999	2.13681	0.0132708	0.00268027	0.100189	0.0464781
chr12	116173901	116174001	5424508	0	-	0.48	(0.476,0.515]	chr12	518263	620	INTRON	INTRON	MED13L	ENSG00000123066.9	ENST00000281928.9:ENST00000650226.1:ENST00000548743.2:ENST00000647567.1:ENST00000551197.2	protein_coding	protein_coding	protein_coding	protein_coding	9	80	2	1.4095	1.84435	2.2792	0.054012	0.00299196	0.16443	0.0503888
chr1	20785785	20785885	389854	0	-	0.27	[0,0.28]	chr1	46583	2	SS5_PROX	SS5_PROX:INTRON	HP1BP3	ENSG00000127483.19	ENST00000438032.6:ENST00000312239.10:ENST00000424732.5:ENST00000417710.5:ENST00000375000.5:ENST00000437575.5:ENST00000419490.5:ENST00000414993.1:ENST00000443615.1	protein_coding	protein_coding	protein_coding	protein_coding	12	150	2	1.7404	1.8443399999999999	1.94828	0.0191378	0.0100993	0.108861	0.0885774
chr17	28587698	28587798	6744546	0	-	0.31	(0.28,0.32]	chr17	662448	8	INTRON	INTRON	SPAG5	ENSG00000076382.17	ENST00000321765.10:ENST00000584206.1	protein_coding	protein_coding	protein_coding	protein_coding	11	113	2	1.45628	1.844255	2.23223	0.0260726	0.0109124	0.133676	0.0873034
chr1	219970400	219970497	638394	0	-	0.371134	(0.35,0.378]	chr1	75162	9	INTRON	INTRON	EPRS1	ENSG00000136628.18	ENST00000366923.8	protein_coding	protein_coding	protein_coding	protein_coding	6	57	2	1.59505	1.84418	2.09331	0.040425	0.0315717	0.161534	0.13151
chr16	23955819	23955919	6324959	0	+	0.37	(0.35,0.378]	chr16	605701	621	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000498739.1	protein_coding	protein_coding	protein_coding	protein_coding	6	57	2	1.54563	1.844135	2.14264	0.046845	0.0274795	0.167716	0.123904
chr3	39066218	39066303	1401284	0	+	0.376471	(0.35,0.378]	chr3	147044	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	WDR48	ENSG00000114742.14	ENST00000423296.6:ENST00000302313.10:ENST00000413099.6:ENST00000433841.6:ENST00000420940.6:ENST00000441361.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	57	2	1.54563	1.844135	2.14264	0.046845	0.0274795	0.167716	0.123904
chr3	6548301	6548401	1356724	0	+	0.39	(0.378,0.408]	chr3	142508	352	INTRON	INTRON	ENSG00000189229	ENSG00000189229.12	ENST00000660158.1:ENST00000433639.1:ENST00000655754.1:ENST00000653839.1:ENST00000662846.1:ENST00000659876.1:ENST00000414438.2:ENST00000658468.1:ENST00000414603.1:ENST00000669512.1:ENST00000667028.1:ENST00000655541.1:ENST00000668643.1:ENST00000671568.1:ENST00000671036.1:ENST00000669798.1:ENST00000655753.1:ENST00000655856.1:ENST00000658398.1:ENST00000661518.1:ENST00000661279.1:ENST00000655495.1:ENST00000663041.1:ENST00000659827.1:ENST00000667716.1:ENST00000662508.1:ENST00000668416.1:ENST00000658133.1:ENST00000659651.1:ENST00000342990.4:ENST00000660054.1:ENST00000671370.1	lncRNA	lncRNA	lncRNA	lncRNA	6	58	2	1.78011	1.844115	1.90812	0.0356367	0.0264295	0.151629	0.122506
chr16	47674091	47674190	6345462	0	+	0.343434	(0.32,0.35]	chr16	609021	43	INTRON	INTRON	PHKB	ENSG00000102893.17	ENST00000566044.5:ENST00000299167.12:ENST00000696809.1:ENST00000323584.10:ENST00000566275.2:ENST00000566319.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	68	2	1.42176	1.84408	2.2664	0.0511006	0.0199969	0.176696	0.109608
chr2	131280085	131280184	866182	0	+	0.393939	(0.378,0.408]	chr2	97282	3	INTRON	INTRON	PLEKHB2:FAR2P4	ENSG00000115762.17:ENSG00000231431.7	ENST00000404460.5:ENST00000560285.5	protein_coding	protein_coding	protein_coding:transcribed_unprocessed_pseudogene	protein_coding:processed_transcript	15	137	2	1.71657	1.843975	1.97138	0.0125411	0.00246185	0.0926667	0.0459102
chr21	39261266	39261366	7465003	0	-	0.43	(0.408,0.44]	chr21	760495	22	INTRON	INTRON	BRWD1	ENSG00000185658.14	ENST00000333229.6:ENST00000342449.8:ENST00000446924.5:ENST00000380800.7:ENST00000430093.5:ENST00000445245.5:ENST00000445668.5:ENST00000412604.1:ENST00000455867.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	59	2	1.62843	1.84395	2.05947	0.0333232	0.025242	0.134145	0.133676
chr10	35347990	35348090	4424617	0	+	0.36	(0.35,0.378]	chr10	407899	104	INTRON	INTRON	CCNY	ENSG00000108100.18	ENST00000374706.5:ENST00000490012.6:ENST00000493157.6:ENST00000374704.8:ENST00000265375.13:ENST00000339497.7:ENST00000492478.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	96	2	1.32095	1.8438050000000001	2.36666	0.0594109	0.00212276	0.16883600000000001	0.0426185
chr6	52365280	52365380	2875498	0	+	0.32	(0.28,0.32]	chr6	272897	24	INTRON	INTRON	PAQR8:EFHC1	ENSG00000170915.9:ENSG00000096093.16	ENST00000512121.1:ENST00000635984.1:ENST00000637849.1:ENST00000635760.1:ENST00000442253.3:ENST00000491749.2:ENST00000360726.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	60	2	1.72279	1.8437700000000001	1.96475	0.0496859	0.0428385	0.162255	0.156383
chr17	76735867	76735965	6844243	0	-	0.387755	(0.378,0.408]	chr17	677087	19	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SRSF2	ENSG00000161547.17	ENST00000392485.2:ENST00000359995.10:ENST00000585202.5:ENST00000582449.5:ENST00000452355.7:ENST00000589919.1:ENST00000508921.7:ENST00000592676.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	24	220	2	1.78512	1.843685	1.90225	0.00364967	0.00181345	0.0535094	0.0394469
chr11	78349856	78349955	4999707	0	-	0.323232	(0.32,0.35]	chr11	472466	81	INTRON	INTRON	GAB2	ENSG00000033327.13	ENST00000361507.5:ENST00000526030.1:ENST00000528886.5:ENST00000530915.1:ENST00000534823.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	11	91	2	1.15626	1.843665	2.53107	0.0599131	0.00860484	0.190341	0.0784134
chr3	42628202	42628300	1406256	0	+	0.387755	(0.378,0.408]	chr3	147680	11	EXON_MRNA	EXON_MRNA:INTRON	NKTR	ENSG00000114857.19	ENST00000468735.6:ENST00000429888.5:ENST00000232978.13:ENST00000465584.5:ENST00000466553.1:ENST00000498730.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	17	133	2	1.11888	1.84363	2.56838	0.0460461	0.0010901	0.165428	0.0303873
chr16	84728279	84728379	6410186	0	+	0.2	[0,0.28]	chr16	615272	114	INTRON	INTRON	USP10	ENSG00000103194.16	ENST00000562743.5:ENST00000540269.6:ENST00000563892.5:ENST00000562092.1:ENST00000569511.5:ENST00000219473.12:ENST00000570191.5:ENST00000563048.5:ENST00000562283.5:ENST00000563386.5:ENST00000569038.5:ENST00000570053.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	10	132	2	1.59598	1.843545	2.09111	0.0401089	0.00567932	0.143774	0.0678837
chr21	15736030	15736130	7370155	0	+	0.39	(0.378,0.408]	chr21	752186	52	INTRON	INTRON	USP25	ENSG00000155313.16	ENST00000400183.7:ENST00000285681.6:ENST00000285679.10:ENST00000351097.9	protein_coding	protein_coding	protein_coding	protein_coding	11	98	2	1.61829	1.843505	2.06872	0.0153255	0.00895678	0.108569	0.0800073
chr5	175526831	175526928	2551020	0	+	0.453608	(0.44,0.476]	chr5	243564	2	UTR3	UTR3:EXON_MRNA	SFXN1	ENSG00000164466.13	ENST00000321442.10:ENST00000421887.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	58	2	1.4962	1.84349	2.19078	0.0392301	0.0226089	0.161534	0.117489
chr17	70107673	70107773	6828525	0	-	0.3	(0.28,0.32]	chr17	675009	345	INTRON	INTRON	ENSG00000230258	ENSG00000230258.6	ENST00000435112.5	lncRNA	lncRNA	lncRNA	lncRNA	7	75	2	1.63236	1.84347	2.05458	0.0381508	0.0273014	0.141764	0.136494
chr1	112663376	112663475	186773	0	+	0.333333	(0.32,0.35]	chr1	20673	32	INTRON	INTRON	CAPZA1	ENSG00000116489.13	ENST00000476936.5:ENST00000263168.4:ENST00000498626.1:ENST00000466066.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	68	2	1.37958	1.843445	2.30731	0.0577841	0.0176772	0.188484	0.10525
chr9	3528277	3528377	4092885	0	+	0.22	[0,0.28]	chr9	373028	11	INTRON	INTRON	RFX3-DT	ENSG00000232104.4	ENST00000691391.1:ENST00000691026.1:ENST00000423112.2	lncRNA	lncRNA	lncRNA	lncRNA	8	95	2	1.58784	1.843415	2.09899	0.0371453	0.0264744	0.139304	0.133926
chr10	73044680	73044780	4647316	0	-	0.3	(0.28,0.32]	chr10	427507	3	SS5_PROX	SS5_PROX:INTRON	P4HA1	ENSG00000122884.13	ENST00000394890.7:ENST00000307116.6:ENST00000373008.6:ENST00000440381.5:ENST00000263556.3	protein_coding	protein_coding	protein_coding	protein_coding	17	184	2	1.55688	1.8433950000000001	2.12991	0.0117024	0.00418269	0.0962115	0.0571772
chr20	58899262	58899355	7291093	0	+	0.354839	(0.35,0.378]	chr20	741835	1	SS5_PROX	SS5_PROX:INTRON	GNAS	ENSG00000087460.29	ENST00000313949.11:ENST00000371075.7:ENST00000419558.7:ENST00000371098.6:ENST00000657090.1:ENST00000453292.7:ENST00000306090.12:ENST00000491348.5:ENST00000472183.6:ENST00000462499.6:ENST00000482112.6:ENST00000663479.2:ENST00000493744.5:ENST00000490374.6:ENST00000467227.6:ENST00000676826.2:ENST00000481768.6:ENST00000371100.9:ENST00000371102.8:ENST00000464624.7:ENST00000349036.9:ENST00000423897.7:ENST00000464960.5:ENST00000488546.6:ENST00000667293.2:ENST00000481039.6:ENST00000467321.6:ENST00000477931.5:ENST00000485673.6:ENST00000470512.6:ENST00000464788.6:ENST00000469431.6:ENST00000604005.6:ENST00000478585.6:ENST00000480975.5:ENST00000480232.6:ENST00000484504.5:ENST00000683015.1:ENST00000461152.6:ENST00000371095.7:ENST00000265620.11:ENST00000354359.12:ENST00000371085.8:ENST00000468895.6:ENST00000371081.5:ENST00000338783.7:ENST00000682803.1:ENST00000488652.6:ENST00000476935.6:ENST00000492907.6:ENST00000603546.2:ENST00000684284.1:ENST00000682134.1:ENST00000682829.1:ENST00000483387.2:ENST00000487862.5:ENST00000496934.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	43	2	1.4414	1.843375	2.24535	0.0647516	0.0629423	0.196658	0.179192
chr19	49159335	49159433	7089047	0	+	0.530612	(0.515,0.57]	chr19	709754	12	UTR3	UTR3:EXON_MRNA:INTRON	TRPM4	ENSG00000130529.16	ENST00000598691.5:ENST00000598697.5:ENST00000252826.10:ENST00000595519.5:ENST00000599628.5:ENST00000427978.6:ENST00000598502.5:ENST00000596338.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	95	2	1.37588	1.843315	2.31075	0.0316075	0.00124389	0.13151	0.0328153
chr11	86057468	86057567	5014727	0	-	0.414141	(0.408,0.44]	chr11	473022	255	INTRON	INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000630913.2:ENST00000528398.5:ENST00000356360.9:ENST00000534412.5:ENST00000531558.1:ENST00000531930.5:ENST00000532041.5:ENST00000525162.5:ENST00000528256.1:ENST00000528411.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	12	107	2	1.57254	1.843275	2.11401	0.0258366	0.00230448	0.12129	0.0440636
chr1	155555063	155555162	562819	0	-	0.444444	(0.44,0.476]	chr1	67117	331	INTRON	INTRON	ASH1L	ENSG00000116539.14	ENST00000676814.1:ENST00000392403.8:ENST00000368346.7:ENST00000677213.1:ENST00000678117.1:ENST00000679097.1:ENST00000679333.1:ENST00000679133.1:ENST00000548830.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	52	2	1.54868	1.843235	2.13779	0.0457575	0.0264596	0.164677	0.122506
chr1	160217103	160217200	571133	0	-	0.443299	(0.44,0.476]	chr1	69098	3	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	DCAF8	ENSG00000132716.19	ENST00000326837.6:ENST00000368073.7:ENST00000368074.6:ENST00000477163.1:ENST00000473382.2	protein_coding	protein_coding	protein_coding	protein_coding	12	105	2	1.57044	1.84321	2.11598	0.0206907	0.0035604	0.110999	0.0548355
chr14	53100461	53100559	5896898	0	-	0.326531	(0.32,0.35]	chr14	560079	39	INTRON	INTRON	DDHD1	ENSG00000100523.16	ENST00000395606.5:ENST00000612692.4:ENST00000673822.2:ENST00000357758.3:ENST00000673827.1:ENST00000674014.1:ENST00000323669.10:ENST00000673930.1:ENST00000674152.1:ENST00000556910.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	105	2	1.74637	1.8431549999999999	1.93994	0.0210156	0.0084207	0.112328	0.0825628
chr3	15851381	15851481	1624361	0	-	0.47	(0.44,0.476]	chr3	168034	367	INTRON	INTRON	ANKRD28	ENSG00000206560.12	ENST00000399451.6:ENST00000412318.5:ENST00000439830.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	74	2	1.34727	1.84313	2.33899	0.0344229	0.0142027	0.147767	0.0959987
chr6	31757513	31757606	2843672	0	+	0.387097	(0.378,0.408]	chr6	267823	2	EXON_LNCRNA	EXON_LNCRNA:INTRON	MSH5:MSH5-SAPCD1	ENSG00000204410.16:ENSG00000255152.8	ENST00000375755.8:ENST00000375750.9:ENST00000650702.1:ENST00000493662.6:ENST00000375703.7:ENST00000375740.7:ENST00000423982.6:ENST00000463144.5:ENST00000450148.5:ENST00000468602.5:ENST00000468136.5:ENST00000395853.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	16	145	2	1.82782	1.84313	1.85844	0.00712194	0.0039093899999999996	0.0723634	0.0569957
chr1	162577381	162577481	238478	0	+	0.38	(0.378,0.408]	chr1	28709	4	SS5_PROX	SS5_PROX:INTRON	UAP1	ENSG00000117143.14	ENST00000367925.6:ENST00000367926.9	protein_coding	protein_coding	protein_coding	protein_coding	8	74	2	1.41307	1.84308	2.27309	0.0510067	0.00769587	0.176593	0.0754631
chr12	123153713	123153797	5443238	0	-	0.380952	(0.378,0.408]	chr12	520742	5	INTRON	INTRON	MPHOSPH9	ENSG00000051825.15	ENST00000544217.1:ENST00000541603.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	107	2	1.2437	1.84304	2.44238	0.049286	0.0019351	0.174117	0.0399069
chr2	65429364	65429464	1144165	0	-	0.33	(0.32,0.35]	chr2	122242	518	INTRON	INTRON	SPRED2	ENSG00000198369.10	ENST00000356388.9:ENST00000440972.1	protein_coding	protein_coding	protein_coding	protein_coding	5	55	2	1.73318	1.8429449999999998	1.95271	0.0462868	0.0431213	0.162255	0.150684
chr5	139311717	139311815	2499563	0	+	0.255102	[0,0.28]	chr5	238922	18	EXON_MRNA	EXON_MRNA:INTRON	MATR3	ENSG00000280987.4:ENSG00000015479.20	ENST00000509990.5:ENST00000506147.5:ENST00000512107.5:ENST00000361059.7:ENST00000394800.6:ENST00000502929.5:ENST00000504203.5:ENST00000509644.5:ENST00000512876.5:ENST00000513678.5:ENST00000513121.1:ENST00000504045.5:ENST00000504311.5:ENST00000502499.5:ENST00000510056.5:ENST00000511249.5:ENST00000394805.8:ENST00000507860.1:ENST00000509918.5:ENST00000503811.5:ENST00000511978.5:ENST00000618441.5:ENST00000514528.5:ENST00000504643.5:ENST00000515833.2:ENST00000514402.1:ENST00000505625.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	15	188	2	1.82605	1.8428900000000001	1.85973	0.0181687	0.00506575	0.107604	0.0646039
chr1	54383882	54383982	463536	0	-	0.51	(0.476,0.515]	chr1	55784	272	INTRON	INTRON	SSBP3	ENSG00000157216.16	ENST00000610401.5:ENST00000357475.9:ENST00000371319.8:ENST00000417664.7:ENST00000533946.6:ENST00000371320.8:ENST00000525990.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	10	87	2	1.59493	1.8427950000000002	2.09066	0.0213255	0.00772252	0.123504	0.0756858
chr7	106257575	106257668	3608310	0	-	0.408602	(0.408,0.44]	chr7	336479	2	INTRON	INTRON	NAMPT	ENSG00000105835.13	ENST00000681491.1:ENST00000222553.8:ENST00000681494.1:ENST00000680708.1:ENST00000681653.1:ENST00000681391.1:ENST00000680991.1:ENST00000680077.1:ENST00000681456.1:ENST00000680675.1:ENST00000681550.1:ENST00000680864.1:ENST00000680584.1:ENST00000680669.1:ENST00000424768.2:ENST00000681255.1:ENST00000679873.1:ENST00000679643.1:ENST00000681878.1:ENST00000489732.2:ENST00000679951.1:ENST00000680823.1:ENST00000680468.1:ENST00000679894.1:ENST00000680482.1:ENST00000679461.1:ENST00000681372.1:ENST00000681936.1:ENST00000680152.1:ENST00000681887.1:ENST00000680129.1:ENST00000680786.1:ENST00000681223.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	14	116	2	1.74022	1.842765	1.94531	0.0136489	0.00477359	0.0949306	0.0636201
chr2	10309119	10309218	691690	0	+	0.494949	(0.476,0.515]	chr2	81125	48	INTRON	INTRON	HPCAL1	ENSG00000115756.13	ENST00000423674.5:ENST00000307845.8:ENST00000381765.7	protein_coding	protein_coding	protein_coding	protein_coding	10	87	2	1.50655	1.8427350000000002	2.17892	0.0316424	0.0046578	0.13151	0.0629753
chr19	28425771	28425870	7165400	0	-	0.40404	(0.378,0.408]	chr19	724146	55	INTRON	INTRON	ENSG00000260725	ENSG00000260725.1	ENST00000567877.1	lncRNA	lncRNA	lncRNA	lncRNA	12	112	2	1.46195	1.84268	2.22341	0.0276002	0.00295931	0.137011	0.0486566
chr21	21202352	21202452	7381033	0	+	0.23	[0,0.28]	chr21	752602	2034	INTRON	INTRON	NCAM2	ENSG00000154654.15	ENST00000400546.6	protein_coding	protein_coding	protein_coding	protein_coding	10	122	2	1.32273	1.842645	2.36256	0.0508852	0.00833733	0.176224	0.0774402
chr4	61351	61451	1905370	0	+	0.54	(0.515,0.57]	chr4	191003	8	INTRON	INTRON	ZNF595	ENSG00000272602.6	ENST00000608255.2:ENST00000609518.5:ENST00000509152.3:ENST00000610261.6	protein_coding	protein_coding	protein_coding	protein_coding	13	98	2	1.66287	1.842645	2.02242	0.0119395	0.0037079	0.0962115	0.0535094
chr17	75141598	75141697	6835950	0	-	0.454545	(0.44,0.476]	chr17	675456	50	INTRON	INTRON	JPT1	ENSG00000189159.16	ENST00000409753.8:ENST00000476258.5:ENST00000482348.5:ENST00000304834.11:ENST00000356033.8:ENST00000470924.5:ENST00000481094.1:ENST00000481647.5:ENST00000580380.1:ENST00000581874.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	82	2	1.4659	1.8426	2.2193	0.0269628	0.00896114	0.135436	0.0800073
chr1	35189782	35189882	420570	0	-	0.5	(0.476,0.515]	chr1	50677	4	SS3_PROX	SS3_PROX:INTRON	SFPQ	ENSG00000116560.12	ENST00000470472.5:ENST00000696553.1:ENST00000357214.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	14	121	2	1.66549	1.8425099999999999	2.01953	0.0163662	0.007191	0.109586	0.0726693
chr5	54018309	54018409	2617987	0	-	0.34	(0.32,0.35]	chr5	248835	1063	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	86	2	1.38564	1.84239	2.29914	0.0793006	0.00307433	0.199711	0.0510029
chr1	171528244	171528344	253653	0	+	0.4	(0.378,0.408]	chr1	30151	4	SS5_PROX	SS5_PROX:INTRON	PRRC2C	ENSG00000117523.18	ENST00000647382.2:ENST00000367742.7:ENST00000476522.5:ENST00000338920.8:ENST00000426496.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	57	2	1.64169	1.842305	2.04292	0.0377255	0.0326035	0.145164	0.14078
chr4	39917047	39917117	2131590	0	-	0.342857	(0.32,0.35]	chr4	210209	1	CDS	CDS:EXON_MRNA:INTRON	PDS5A	ENSG00000121892.15	ENST00000303538.13:ENST00000503396.5:ENST00000513798.1	protein_coding	protein_coding	protein_coding	protein_coding	9	81	2	1.41804	1.84222	2.2664	0.0337299	0.0199969	0.146709	0.109608
chr1	8877785	8877878	374301	0	-	0.548387	(0.515,0.57]	chr1	43662	4	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	ENO1	ENSG00000074800.16	ENST00000234590.10:ENST00000647408.1:ENST00000646370.2:ENST00000645609.1:ENST00000497492.1:ENST00000646660.1:ENST00000646680.1:ENST00000646906.1:ENST00000646156.1:ENST00000643438.1:ENST00000489867.2:ENST00000486051.5:ENST00000492343.2:ENST00000414948.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	14	106	2	1.72899	1.842185	1.95538	0.00899744	0.00361448	0.0851009	0.0533855
chr7	157379792	157379890	3455743	0	+	0.397959	(0.378,0.408]	chr7	323103	18	EXON_MRNA	EXON_MRNA:INTRON	DNAJB6	ENSG00000105993.15	ENST00000441561.5:ENST00000429029.6:ENST00000262177.9:ENST00000417758.5:ENST00000459889.5:ENST00000443280.5:ENST00000441291.5:ENST00000412557.5:ENST00000634080.1:ENST00000468928.5:ENST00000465908.5:ENST00000487480.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	13	119	2	1.79655	1.84218	1.88781	0.0118498	0.00486383	0.0899583	0.0640618
chr16	219050	219150	6426084	0	-	0.54	(0.515,0.57]	chr16	617437	94	INTRON	INTRON	LUC7L	ENSG00000007392.17	ENST00000337351.8:ENST00000426094.5:ENST00000397783.5:ENST00000629543.2:ENST00000490762.5:ENST00000293872.13:ENST00000419516.5:ENST00000397780.5:ENST00000418978.5:ENST00000430864.5:ENST00000443357.5:ENST00000494366.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	25	173	2	1.60439	1.842165	2.07994	0.00343897	0.00144896	0.0539802	0.0343503
chr3	194405229	194405328	1890346	0	-	0.383838	(0.378,0.408]	chr3	189090	27	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ATP13A3	ENSG00000133657.17	ENST00000687055.1:ENST00000645538.1:ENST00000645319.2:ENST00000690810.1:ENST00000429136.7:ENST00000645621.1:ENST00000691700.1:ENST00000461660.2:ENST00000685123.1:ENST00000642744.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	17	143	2	1.61346	1.8421349999999999	2.07081	0.00659031	0.00563808	0.0737338	0.0653997
chr1	1316554	1316653	359479	0	-	0.363636	(0.35,0.378]	chr1	41630	5	EXON_LNCRNA	EXON_LNCRNA:INTRON	INTS11	ENSG00000127054.22	ENST00000540437.5:ENST00000545578.5:ENST00000620829.4:ENST00000435064.6:ENST00000323275.10:ENST00000411962.5:ENST00000462432.5:ENST00000419704.5:ENST00000458452.7:ENST00000421495.6:ENST00000532772.5:ENST00000450926.6:ENST00000527098.5:ENST00000528879.5:ENST00000531377.5:ENST00000434694.6:ENST00000488042.6:ENST00000526797.5:ENST00000526332.5:ENST00000430786.5:ENST00000527719.5:ENST00000530031.5:ENST00000526113.1:ENST00000526904.5:ENST00000525603.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	26	245	2	1.78097	1.841945	1.90292	0.00514436	0.00109676	0.062965	0.0303708
chr11	64772235	64772334	4965242	0	-	0.323232	(0.32,0.35]	chr11	467532	3	INTRON	INTRON	SF1	ENSG00000168066.21	ENST00000334944.9:ENST00000227503.13:ENST00000377394.7:ENST00000448404.5:ENST00000377390.8:ENST00000377387.5:ENST00000681407.1:ENST00000433274.6:ENST00000633899.1:ENST00000413951.5:ENST00000432725.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	16	164	2	1.80875	1.84191	1.87507	0.0077436	0.00484058	0.0757402	0.0640618
chrX	74587057	74587157	7841669	0	-	0.31	(0.28,0.32]	chrX	799768	42	UTR3	UTR3:EXON_MRNA	RLIM	ENSG00000131263.13	ENST00000332687.11	protein_coding	protein_coding	protein_coding	protein_coding	11	119	2	1.43078	1.84188	2.25298	0.0347661	0.00791652	0.137259	0.0797304
chr2	61290771	61290871	1128714	0	-	0.33	(0.32,0.35]	chr2	121324	15	INTRON	INTRON	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000472706.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	87	2	1.37637	1.8418400000000001	2.30731	0.0329291	0.0176772	0.145171	0.10525
chr10	833837	833935	4541594	0	-	0.387755	(0.378,0.408]	chr10	419243	25	INTRON	INTRON	LARP4B	ENSG00000107929.16	ENST00000688365.1:ENST00000316157.8:ENST00000690516.1:ENST00000689323.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	16	143	2	1.48864	1.841815	2.19499	0.0183012	0.00158524	0.108265	0.0367961
chr5	36939433	36939533	2339057	0	+	0.34	(0.32,0.35]	chr5	225949	531	INTRON	INTRON	NIPBL	ENSG00000164190.19	ENST00000282516.13:ENST00000448238.2:ENST00000652901.1	protein_coding	protein_coding	protein_coding	protein_coding	6	61	2	1.54741	1.841805	2.1362	0.0473733	0.0291083	0.169265	0.128029
chr3	47835105	47835205	1420300	0	+	0.46	(0.44,0.476]	chr3	149238	41	INTRON	INTRON	DHX30	ENSG00000132153.15	ENST00000395745.6:ENST00000445061.6:ENST00000441384.5:ENST00000348968.8:ENST00000446256.6:ENST00000619982.4:ENST00000457607.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	13	115	2	1.75768	1.84166	1.92564	0.0101204	0.00555103	0.0850389	0.0675005
chr1	207350239	207350338	303563	0	+	0.383838	(0.378,0.408]	chr1	34932	23	INTRON	INTRON	CD55	ENSG00000196352.18	ENST00000695822.1:ENST00000695823.1:ENST00000695826.1:ENST00000695825.1:ENST00000695827.1:ENST00000645323.1:ENST00000391921.9:ENST00000367064.9:ENST00000314754.12:ENST00000644836.1:ENST00000476590.1:ENST00000465534.5:ENST00000618707.2:ENST00000635614.2:ENST00000695831.1:ENST00000634386.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	67	2	1.57136	1.84165	2.11194	0.0292534	0.0233757	0.128055	0.128037
chr6	83168047	83168145	3145610	0	-	0.387755	(0.378,0.408]	chr6	293243	17	UTR3	UTR3:EXON_MRNA:INTRON	PGM3	ENSG00000013375.16	ENST00000504780.5:ENST00000513973.6:ENST00000512866.5:ENST00000650640.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	67	2	1.57136	1.84165	2.11194	0.0292534	0.0233757	0.128055	0.128037
chr9	96980332	96980432	4298656	0	-	0.44	(0.408,0.44]	chr9	395262	70	INTRON	INTRON	MFSD14C	ENSG00000196312.15	ENST00000647176.1:ENST00000645073.1:ENST00000637864.1:ENST00000652726.1:ENST00000637811.1:ENST00000650909.1	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript:transcribed_unprocessed_pseudogene	5	40	2	1.49523	1.84165	2.18807	0.0708044	0.0534846	0.184528	0.180041
chr7	105079463	105079558	3375294	0	+	0.294737	(0.28,0.32]	chr7	315941	1	INTRON	INTRON	KMT2E	ENSG00000005483.22	ENST00000257745.9:ENST00000334884.9:ENST00000311117.8:ENST00000478990.5:ENST00000476671.5:ENST00000667857.1:ENST00000482560.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	20	215	2	1.65377	1.84158	2.02939	0.00613834	0.00478578	0.0709731	0.0602209
chr20	58678251	58678349	7290459	0	+	0.357143	(0.35,0.378]	chr20	741764	21	UTR3	UTR3:EXON_MRNA	STX16	ENSG00000124222.22	ENST00000361830.7:ENST00000355957.9:ENST00000371141.8:ENST00000359617.8:ENST00000371132.8:ENST00000358029.8	protein_coding	protein_coding	protein_coding	protein_coding	7	69	2	1.70607	1.84152	1.97697	0.0482819	0.0109711	0.153283	0.092635
chr3	172784107	172784206	1563564	0	+	0.383838	(0.378,0.408]	chr3	161794	2	SS5_PROX	SS5_PROX:INTRON	ECT2	ENSG00000114346.14	ENST00000232458.9:ENST00000540509.5:ENST00000392692.8:ENST00000417960.5:ENST00000441497.6	protein_coding	protein_coding	protein_coding	protein_coding	5	41	2	1.45712	1.84151	2.2259	0.0662381	0.0597975	0.189982	0.181924
chr11	65505325	65505424	4806197	0	+	0.454545	(0.44,0.476]	chr11	446569	78	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MALAT1	ENSG00000251562.9	ENST00000619449.2:ENST00000534336.1:ENST00000610851.1:ENST00000618227.1:ENST00000617489.1:ENST00000616691.1	lncRNA	lncRNA	lncRNA	lncRNA	1012	8245	2	1.7484	1.84147	1.93454	1.90937e-4	1.48137e-4	0.0120207	0.0111233
chr3	141925130	141925230	1526575	0	+	0.37	(0.35,0.378]	chr3	159057	2	SS3_PROX	SS3_PROX:INTRON	ATP1B3	ENSG00000069849.11	ENST00000465172.5:ENST00000286371.8:ENST00000466678.5:ENST00000462082.1:ENST00000487199.5:ENST00000484727.1:ENST00000486782.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	88	2	1.3743	1.8414450000000002	2.30859	0.0623871	0.00276702	0.175402	0.0486894
chr18	46264409	46264508	6899993	0	+	0.363636	(0.35,0.378]	chr18	683643	14	UTR3	UTR3:EXON_MRNA	C18orf25	ENSG00000152242.11	ENST00000615052.5:ENST00000619301.4	protein_coding	protein_coding	protein_coding	protein_coding	6	60	2	1.6122	1.841345	2.07049	0.0616849	0.0140397	0.174021	0.102801
chr3	9416132	9416232	1359070	0	+	0.47	(0.44,0.476]	chr3	142658	4	SS5_PROX	SS5_PROX:INTRON	SETD5	ENSG00000168137.20	ENST00000402198.7:ENST00000431285.5:ENST00000683012.1:ENST00000463180.5:ENST00000478475.5:ENST00000415650.5:ENST00000682536.1:ENST00000663774.1:ENST00000665872.1:ENST00000666307.1:ENST00000693430.1:ENST00000691925.1:ENST00000684606.1:ENST00000691175.1:ENST00000688835.1:ENST00000683262.1:ENST00000443339.5:ENST00000406341.5:ENST00000670063.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	15	131	2	1.77947	1.84129	1.90311	0.00926895	0.00335678	0.0817766	0.0531823
chr22	19100868	19100968	7551799	0	-	0.49	(0.476,0.515]	chr22	771903	110	INTRON	INTRON	DGCR2	ENSG00000070413.20	ENST00000537045.5:ENST00000545799.5:ENST00000263196.12:ENST00000389262.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	70	2	1.43644	1.8412799999999998	2.24612	0.047372	0.00799949	0.169265	0.0766625
chr15	89283750	89283843	6096146	0	+	0.483871	(0.476,0.515]	chr15	580165	1	INTRON	INTRON	FANCI	ENSG00000140525.20	ENST00000674831.1:ENST00000300027.12:ENST00000310775.12:ENST00000696717.1:ENST00000676003.1:ENST00000696718.1:ENST00000447611.6:ENST00000696719.1:ENST00000565522.5:ENST00000561894.1:ENST00000566895.5:ENST00000564350.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	14	122	2	1.5983	1.84117	2.08404	0.0132605	0.00332119	0.100131	0.0512081
chr14	102614917	102615017	5822756	0	+	0.52	(0.515,0.57]	chr14	552490	212	INTRON	INTRON	RCOR1	ENSG00000089902.10	ENST00000262241.7	protein_coding	protein_coding	protein_coding	protein_coding	7	50	2	1.28871	1.84111	2.39351	0.0731249	0.0100431	0.189597	0.0881096
chr2	231807935	231808032	1033000	0	+	0.494845	(0.476,0.515]	chr2	110368	4	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	COPS7B	ENSG00000144524.18	ENST00000611614.4:ENST00000620578.4:ENST00000413197.5:ENST00000350033.8:ENST00000412922.6:ENST00000410017.5:ENST00000373608.7:ENST00000461350.5:ENST00000488111.1:ENST00000449174.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	87	2	1.30089	1.84109	2.38129	0.04054	0.00474233	0.161534	0.0600445
chr3	152327618	152327718	1535575	0	+	0.37	(0.35,0.378]	chr3	159996	253	INTRON	INTRON	MBNL1	ENSG00000152601.18	ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000495875.6:ENST00000324210.10:ENST00000493459.5:ENST00000459747.1:ENST00000460591.5:ENST00000545754.5:ENST00000357472.7:ENST00000324196.9:ENST00000498502.5:ENST00000463374.5:ENST00000485910.5:ENST00000465907.6:ENST00000492948.5:ENST00000485509.5:ENST00000464596.5	protein_coding	protein_coding	protein_coding	protein_coding	19	172	2	1.74301	1.8409900000000001	1.93897	0.0071554	0.00326548	0.0723634	0.0525582
chr2	61530342	61530439	1131151	0	-	0.329897	(0.32,0.35]	chr2	121638	8	INTRON	INTRON	XPO1	ENSG00000082898.19	ENST00000676553.1:ENST00000677556.1:ENST00000677814.1:ENST00000676771.1:ENST00000677803.1:ENST00000677239.1:ENST00000678790.1:ENST00000677928.1:ENST00000678182.1:ENST00000677150.1:ENST00000678172.1:ENST00000678360.1:ENST00000678081.1:ENST00000676889.1:ENST00000676783.1:ENST00000679035.1:ENST00000677422.1:ENST00000677417.1:ENST00000677813.1:ENST00000676999.1:ENST00000676667.1:ENST00000678263.1:ENST00000678877.1:ENST00000677933.1:ENST00000680228.1:ENST00000401558.7:ENST00000428210.5:ENST00000677290.1:ENST00000677850.1:ENST00000451765.6:ENST00000676789.1:ENST00000678741.1:ENST00000404992.6:ENST00000406957.5:ENST00000443240.5:ENST00000420673.6:ENST00000481214.1:ENST00000495003.1:ENST00000449444.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	105	2	1.64981	1.840895	2.03198	0.0193728	0.0117401	0.108916	0.0962115
chr3	138831698	138831798	1831470	0	-	0.46	(0.44,0.476]	chr3	184062	348	INTRON	INTRON	PIK3CB	ENSG00000051382.9	ENST00000674063.1:ENST00000477593.5:ENST00000462898.5:ENST00000483968.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	94	2	1.26546	1.84087	2.41628	0.0568404	0.00156262	0.167723	0.0365263
chr18	77979637	77979737	6990151	0	-	0.47	(0.44,0.476]	chr18	691892	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	LINC01029	ENSG00000265843.3	ENST00000657337.1:ENST00000669341.1:ENST00000671271.1:ENST00000668585.1:ENST00000666771.1:ENST00000667842.1:ENST00000661306.1:ENST00000662598.1:ENST00000662109.1:ENST00000662085.1:ENST00000583106.1:ENST00000582805.1:ENST00000656930.1	lncRNA	lncRNA	lncRNA	lncRNA	24	217	2	1.44767	1.8408	2.23393	0.0122522	4.36829e-4	0.0969406	0.0191897
chr6	26122016	26122116	3070844	0	-	0.33	(0.32,0.35]	chr6	285403	65	INTRON	INTRON	H2BC4	ENSG00000180596.8	ENST00000314332.5	protein_coding	protein_coding	protein_coding	protein_coding	12	124	2	1.57718	1.84076	2.10434	0.0232145	0.00423324	0.118148	0.0595557
chr7	148822264	148822364	3670132	0	-	0.47	(0.44,0.476]	chr7	340580	15	INTRON	INTRON	EZH2	ENSG00000106462.12	ENST00000683292.1:ENST00000320356.7:ENST00000492143.5:ENST00000478654.5:ENST00000350995.6:ENST00000460911.5:ENST00000683744.1:ENST00000682317.1:ENST00000682263.1:ENST00000684300.1:ENST00000476773.5:ENST00000483967.5:ENST00000498186.5:ENST00000483012.1:ENST00000682401.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	22	190	2	1.80184	1.8407300000000002	1.87962	0.00463199	0.00166775	0.0600108	0.0378607
chr16	16105860	16105960	6309343	0	+	0.45	(0.44,0.476]	chr16	603640	4	SS5_PROX	SS5_PROX:INTRON	ABCC1	ENSG00000103222.20	ENST00000678422.1:ENST00000677164.1:ENST00000399408.7:ENST00000572882.3:ENST00000399410.8:ENST00000575422.5:ENST00000576557.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	76	2	1.49801	1.840725	2.18344	0.0300375	0.0102102	0.142135	0.0850389
chr14	21265321	21265418	5835127	0	-	0.329897	(0.32,0.35]	chr14	554468	29	UTR5	UTR5:EXON_MRNA:INTRON	HNRNPC	ENSG00000092199.19	ENST00000336053.10:ENST00000553300.6:ENST00000554969.5:ENST00000556142.5:ENST00000554455.5:ENST00000430246.6:ENST00000553753.5:ENST00000555309.5:ENST00000555914.5:ENST00000557442.5:ENST00000556628.5:ENST00000556513.5:ENST00000555883.5:ENST00000557201.5:ENST00000420743.6:ENST00000554539.5:ENST00000554383.5:ENST00000555215.5:ENST00000555137.5:ENST00000554891.5:ENST00000556226.5:ENST00000555176.5:ENST00000553614.5:ENST00000557336.1:ENST00000557768.1:ENST00000557033.1:ENST00000555127.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	15	147	2	1.42586	1.8404850000000001	2.25511	0.020823	0.00309417	0.122348	0.0498063
chr21	39299779	39299879	7465404	0	-	0.45	(0.44,0.476]	chr21	760568	8	INTRON	INTRON	BRWD1	ENSG00000185658.14	ENST00000333229.6:ENST00000342449.8:ENST00000380800.7:ENST00000341322.4:ENST00000470108.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	17	137	2	1.5974	1.84048	2.08356	0.00694349	0.00502853	0.0754576	0.0619934
chr5	32146277	32146377	2597235	0	-	0.34	(0.32,0.35]	chr5	246744	20	INTRON	INTRON	GOLPH3	ENSG00000113384.14	ENST00000265070.7:ENST00000503610.5:ENST00000512668.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	11	103	2	1.29183	1.840325	2.38882	0.0438084	0.00566663	0.162255	0.0653997
chr3	133588834	133588929	1509651	0	+	0.294737	(0.28,0.32]	chr3	157894	6	UTR3	UTR3:EXON_MRNA	CDV3	ENSG00000091527.17	ENST00000688838.1:ENST00000264993.8:ENST00000420115.6:ENST00000515421.1	protein_coding	protein_coding	protein_coding	protein_coding	16	186	2	1.47018	1.84025	2.21032	0.0213496	0.00224505	0.123639	0.0424511
chr8	20213191	20213287	3710767	0	+	0.28125	(0.28,0.32]	chr8	344351	4	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	ATP6V1B2	ENSG00000147416.11	ENST00000276390.7:ENST00000523482.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	57	2	1.41943	1.8401649999999998	2.2609	0.0671429	0.0528302	0.183051	0.178899
chr7	128541428	128541527	3407458	0	+	0.313131	(0.28,0.32]	chr7	318333	73	INTRON	INTRON	ENSG00000280828	ENSG00000280828.1	ENST00000479267.2	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	10	108	2	1.7781	1.8401	1.9021	0.0304779	0.00932885	0.130699	0.0856412
chr1	86990628	86990728	154355	0	+	0.42	(0.408,0.44]	chr1	16969	152	INTRON	INTRON	HS2ST1	ENSG00000153936.18	ENST00000370550.10:ENST00000370551.8:ENST00000687893.1:ENST00000693745.1:ENST00000689904.1:ENST00000690674.1:ENST00000591456.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	38	2	1.74775	1.84009	1.93243	0.0735403	0.0441194	0.190238	0.162255
chr11	76478334	76478434	4835838	0	+	0.44	(0.408,0.44]	chr11	451075	51	INTRON	INTRON	EMSY	ENSG00000158636.17	ENST00000427574.6:ENST00000695367.1:ENST00000334736.7:ENST00000524490.5:ENST00000533972.5:ENST00000525038.5:ENST00000524767.5:ENST00000525919.5:ENST00000533248.5:ENST00000529032.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	38	2	1.74775	1.84009	1.93243	0.0735403	0.0441194	0.190238	0.162255
chr17	77320064	77320151	6679829	0	+	0.413793	(0.408,0.44]	chr17	652484	4	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	SEPTIN9	ENSG00000184640.20	ENST00000589070.1:ENST00000591833.5:ENST00000591198.5:ENST00000427177.6:ENST00000590576.5:ENST00000431235.6:ENST00000449803.6:ENST00000587237.1:ENST00000329047.13:ENST00000588575.1:ENST00000590595.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	38	2	1.74775	1.84009	1.93243	0.0735403	0.0441194	0.190238	0.162255
chr21	39310545	39310645	7465512	0	-	0.4	(0.378,0.408]	chr21	760568	116	INTRON	INTRON	BRWD1	ENSG00000185658.14	ENST00000333229.6:ENST00000342449.8:ENST00000380800.7:ENST00000341322.4:ENST00000470108.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	19	161	2	1.5698	1.840065	2.11033	0.00717314	0.00326474	0.0756118	0.0508595
chr3	43700426	43700525	1410273	0	+	0.333333	(0.32,0.35]	chr3	147925	5	INTRON	INTRON	ABHD5	ENSG00000011198.10	ENST00000643520.1:ENST00000456453.5:ENST00000458276.7:ENST00000649763.1:ENST00000643140.1:ENST00000643500.1:ENST00000644371.2:ENST00000013894.3:ENST00000646378.1:ENST00000643477.1:ENST00000646799.1:ENST00000454293.2:ENST00000642351.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	21	188	2	1.49829	1.84006	2.18183	0.00858725	0.00419013	0.083729	0.0572176
chr12	132772210	132772310	5449617	0	-	0.53	(0.515,0.57]	chr12	521962	18	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	GOLGA3	ENSG00000090615.16	ENST00000204726.9:ENST00000450791.8:ENST00000693666.1:ENST00000690057.1:ENST00000688114.1:ENST00000687190.1:ENST00000690511.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	34	2	1.44089	1.84002	2.23915	0.0617046	0.0596178	0.193423	0.16883600000000001
chr3	37248703	37248802	1395806	0	+	0.40404	(0.378,0.408]	chr3	146307	29	INTRON	INTRON	GOLGA4	ENSG00000144674.17	ENST00000435830.6:ENST00000444882.5:ENST00000356847.8:ENST00000450863.6:ENST00000361924.7:ENST00000429018.5:ENST00000431105.1:ENST00000419177.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	117	2	1.7927	1.84002	1.88734	0.0163057	0.00371027	0.101571	0.0561833
chr22	20863038	20863138	7480228	0	+	0.48	(0.476,0.515]	chr22	763060	30	INTRON	INTRON	SNAP29	ENSG00000099940.12	ENST00000215730.12:ENST00000490458.1:ENST00000439214.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	88	2	1.44561	1.8400050000000001	2.2344	0.0359862	0.00432475	0.152355	0.0579331
chr2	96633648	96633748	1181151	0	-	0.5	(0.476,0.515]	chr2	126520	1	SS5_PROX	SS5_PROX:INTRON	KANSL3	ENSG00000114982.19	ENST00000354204.10:ENST00000431828.6:ENST00000487070.5:ENST00000420155.5:ENST00000670907.1:ENST00000666923.1:ENST00000597150.5:ENST00000444759.5:ENST00000452268.5:ENST00000425656.5:ENST00000448075.1:ENST00000451819.5:ENST00000416138.1:ENST00000418735.1:ENST00000475820.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	72	2	1.78315	1.839985	1.89682	0.0215899	0.0158424	0.123836	0.101453
chr5	112977186	112977286	2453382	0	+	0.54	(0.515,0.57]	chr5	235060	2	SS5_PROX	SS5_PROX:INTRON	DCP2	ENSG00000172795.17	ENST00000515408.5:ENST00000513585.6:ENST00000502635.2:ENST00000510046.1:ENST00000389063.3:ENST00000674880.1:ENST00000504961.1:ENST00000512751.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	39	2	1.56681	1.83997	2.11313	0.064862	0.0256725	0.179394	0.133676
chr1	66952799	66952899	139721	0	+	0.49	(0.476,0.515]	chr1	15662	47	INTRON	INTRON	MIER1	ENSG00000198160.15	ENST00000355977.10:ENST00000371018.7:ENST00000357692.6:ENST00000371016.5:ENST00000371014.5:ENST00000401041.6:ENST00000355356.3:ENST00000401042.7:ENST00000479067.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	87	2	1.82595	1.839945	1.85394	0.0202339	0.00763096	0.109955	0.0777238
chr7	75413954	75414051	3338227	0	+	0.56701	(0.515,0.57]	chr7	310814	13	EXON_LNCRNA	EXON_LNCRNA:INTRON	NSUN5P1	ENSG00000223705.10	ENST00000691741.1:ENST00000687920.1:ENST00000393633.6:ENST00000687621.1:ENST00000689022.1:ENST00000691865.1:ENST00000688076.1:ENST00000693166.1:ENST00000457988.5:ENST00000689132.1:ENST00000691132.1:ENST00000692954.1:ENST00000455158.5:ENST00000421140.6:ENST00000693244.1:ENST00000422386.5:ENST00000464979.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	9	68	2	1.73535	1.83992	1.94449	0.0165373	0.0122196	0.110511	0.0910127
chr10	101790595	101790695	4680681	0	-	0.3	(0.28,0.32]	chr10	431945	3	SS5_PROX	SS5_PROX:INTRON	OGA	ENSG00000198408.14	ENST00000439817.5:ENST00000361464.8:ENST00000357797.9:ENST00000482611.5:ENST00000494347.5:ENST00000479811.5:ENST00000461645.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	106	2	1.61821	1.83989	2.06157	0.0189458	0.0173709	0.112406	0.108861
chr11	62882416	62882504	4799604	0	+	0.409091	(0.408,0.44]	chr11	444819	5	EXON_MRNA	EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SLC3A2	ENSG00000168003.18	ENST00000680729.1:ENST00000680002.1:ENST00000681467.1:ENST00000377890.6:ENST00000538084.2:ENST00000681569.1:ENST00000680725.1:ENST00000377891.6:ENST00000377889.6:ENST00000681215.1:ENST00000535296.5:ENST00000680631.1:ENST00000544377.2:ENST00000680610.1:ENST00000680297.1:ENST00000680134.1:ENST00000681232.1:ENST00000681657.1:ENST00000541425.6:ENST00000679908.1:ENST00000681563.1:ENST00000338663.12:ENST00000680654.1:ENST00000681107.1:ENST00000541649.2:ENST00000538682.6:ENST00000536981.6:ENST00000539891.6:ENST00000679594.1:ENST00000535768.2:ENST00000537508.6:ENST00000537839.5:ENST00000546253.5:ENST00000457660.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	25	211	2	1.80711	1.8397999999999999	1.87249	0.00670647	9.1281e-4	0.0707169	0.0277861
chrX	13351599	13351699	7622472	0	+	0.48	(0.476,0.515]	chrX	780353	99	INTRON	INTRON	LINC01203	ENSG00000226985.7	ENST00000669963.1:ENST00000661545.1:ENST00000659526.1:ENST00000656410.1:ENST00000661104.1:ENST00000456091.2:ENST00000655502.1:ENST00000671651.1:ENST00000656979.1:ENST00000656271.1:ENST00000661629.1:ENST00000661464.1:ENST00000668192.1:ENST00000665887.1:ENST00000659191.1:ENST00000667868.1:ENST00000653729.1:ENST00000656111.1	lncRNA	lncRNA	lncRNA	lncRNA	10	87	2	1.55902	1.8397999999999999	2.12058	0.0242957	0.00686728	0.130919	0.071646
chr7	155778125	155778224	3453257	0	+	0.575758	(0.57,1]	chr7	322755	31	UTR3	UTR3:EXON_MRNA	RBM33	ENSG00000184863.11	ENST00000401878.8:ENST00000341148.7	protein_coding	protein_coding	protein_coding	protein_coding	10	45	2	1.80787	1.839795	1.87172	0.0152293	0.0086124	0.0996307	0.0838082
chr3	197955249	197955349	1598787	0	+	0.42	(0.408,0.44]	chr3	165722	1	SS3_PROX	SS3_PROX:INTRON	RPL35A	ENSG00000182899.17	ENST00000647248.2:ENST00000448864.6:ENST00000642387.1:ENST00000429437.5:ENST00000439255.1:ENST00000474640.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	92	2	1.66945	1.8395899999999998	2.00973	0.0218479	0.0069268	0.123836	0.0718189
chr1	29170223	29170322	410327	0	-	0.282828	(0.28,0.32]	chr1	49420	17	EXON_MRNA	EXON_MRNA:INTRON	SRSF4	ENSG00000116350.18	ENST00000373795.7:ENST00000691479.1:ENST00000634348.1:ENST00000466448.4:ENST00000605204.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	16	180	2	1.67185	1.8395650000000001	2.00728	0.0182943	0.00212929	0.108229	0.0427425
chr9	112155199	112155299	4316580	0	-	0.5	(0.476,0.515]	chr9	396987	54	INTRON	INTRON	SUSD1	ENSG00000106868.17	ENST00000374270.8:ENST00000374263.7:ENST00000355396.7:ENST00000374264.6	protein_coding	protein_coding	protein_coding	protein_coding	10	90	2	1.69413	1.83954	1.98495	0.0200655	0.00740375	0.121043	0.0743293
chr8	51821611	51821710	3945808	0	-	0.30303	(0.28,0.32]	chr8	361993	5	INTRON	INTRON	PCMTD1	ENSG00000168300.14	ENST00000544451.2:ENST00000360540.9:ENST00000522514.6:ENST00000519559.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	103	2	1.75863	1.83947	1.92031	0.0182101	0.0177071	0.11319	0.107833
chr7	74193769	74193866	3332426	0	+	0.505155	(0.476,0.515]	chr7	310058	12	EXON_MRNA	EXON_MRNA:INTRON	EIF4H	ENSG00000106682.16	ENST00000678438.1:ENST00000677998.1:ENST00000495187.2:ENST00000265753.13:ENST00000353999.6:ENST00000677570.1:ENST00000677681.1:ENST00000678815.1:ENST00000679266.1:ENST00000679287.1:ENST00000678341.1:ENST00000679161.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	107	2	1.36776	1.839445	2.31113	0.0305439	0.00258657	0.130975	0.0469354
chr15	92909428	92909527	6103784	0	+	0.454545	(0.44,0.476]	chr15	581401	4	INTRON	INTRON	ENSG00000279765:CHD2	ENSG00000279765.3:ENSG00000173575.22	ENST00000629685.2:ENST00000630790.1:ENST00000626874.2:ENST00000394196.9:ENST00000635856.1:ENST00000420239.7:ENST00000628375.2:ENST00000625990.3:ENST00000626782.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	9	76	2	1.60853	1.839345	2.07016	0.020211	0.0151815	0.121301	0.0994339
chr16	87865220	87865319	6539055	0	-	0.464646	(0.44,0.476]	chr16	633647	17	INTRON	INTRON	SLC7A5	ENSG00000103257.9	ENST00000261622.5	protein_coding	protein_coding	protein_coding	protein_coding	6	52	2	1.65297	1.8392750000000002	2.02558	0.0363567	0.0331814	0.145918	0.138959
chr19	54457646	54457746	7099428	0	+	0.44	(0.408,0.44]	chr19	712020	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	LENG8	ENSG00000167615.17	ENST00000616932.4:ENST00000326764.10:ENST00000376514.6:ENST00000610347.1	protein_coding	protein_coding	protein_coding	protein_coding	6	53	2	1.40374	1.83919	2.27464	0.0721345	0.0158016	0.187433	0.109464
chr20	50927253	50927352	7355837	0	-	0.363636	(0.35,0.378]	chr20	750105	81	INTRON	INTRON	ADNP	ENSG00000101126.18	ENST00000621696.5:ENST00000673732.1:ENST00000396029.8:ENST00000644386.1:ENST00000396032.8:ENST00000645081.1:ENST00000642364.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	57	2	1.68908	1.839185	1.98929	0.0417909	0.0301354	0.147075	0.142482
chr3	138686095	138686194	1829994	0	-	0.454545	(0.44,0.476]	chr3	183960	9	INTRON	INTRON	PIK3CB	ENSG00000051382.9	ENST00000674063.1:ENST00000289153.6:ENST00000477593.5:ENST00000469284.6:ENST00000544716.5:ENST00000462898.5:ENST00000481749.5:ENST00000493568.5:ENST00000473435.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	63	2	1.64563	1.8391449999999998	2.03266	0.0363922	0.0155853	0.138959	0.109411
chr1	21746566	21746666	396491	0	-	0.31	(0.28,0.32]	chr1	47305	1	SS5_PROX	SS5_PROX:INTRON	USP48	ENSG00000090686.16	ENST00000400301.5:ENST00000308271.14:ENST00000529637.5:ENST00000421625.6:ENST00000374730.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	58	2	1.71442	1.8390900000000001	1.96376	0.0480066	0.0454351	0.164236	0.153019
chr4	126553012	126553112	2236239	0	-	0.3	(0.28,0.32]	chr4	219023	875	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	7	74	2	1.45717	1.83893	2.22069	0.0472947	0.0243177	0.16913	0.12011
chr11	17131125	17131221	4928296	0	-	0.4375	(0.408,0.44]	chr11	461424	13	INTRON	INTRON	PIK3C2A	ENSG00000011405.14	ENST00000531428.1:ENST00000265970.11:ENST00000691414.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	46	2	1.74775	1.8388849999999999	1.93002	0.0735403	0.022095	0.190238	0.123903
chr7	5692076	5692176	3474056	0	-	0.43	(0.408,0.44]	chr7	324821	392	INTRON	INTRON	RNF216	ENSG00000011275.19	ENST00000425013.6:ENST00000389902.8:ENST00000389900.8:ENST00000484458.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	46	2	1.74775	1.8388849999999999	1.93002	0.0735403	0.022095	0.190238	0.123903
chr3	50026010	50026110	1423820	0	+	0.4	(0.378,0.408]	chr3	149994	261	INTRON	INTRON	RBM6	ENSG00000004534.15	ENST00000442092.5:ENST00000443081.5:ENST00000419610.5:ENST00000441115.5:ENST00000422955.5:ENST00000454079.5:ENST00000266022.9:ENST00000425608.5:ENST00000434592.5:ENST00000464013.5:ENST00000483350.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	101	2	1.83034	1.83888	1.84742	0.013385	0.00851588	0.0946278	0.0833995
chr13	79405403	79405503	5626401	0	-	0.47	(0.44,0.476]	chr13	536668	3	SS5_PROX	SS5_PROX:INTRON	RBM26	ENSG00000139746.16	ENST00000438737.3:ENST00000438724.5:ENST00000622611.4:ENST00000267229.11:ENST00000472143.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	80	2	1.68545	1.838865	1.99228	0.0322071	0.00615695	0.132543	0.0711648
chr11	63630357	63630448	4962404	0	-	0.384615	(0.378,0.408]	chr11	467125	6	INTRON	INTRON	ATL3	ENSG00000184743.13	ENST00000398868.8:ENST00000538786.1	protein_coding	protein_coding	protein_coding	protein_coding	8	75	2	1.78703	1.838775	1.89052	0.0240043	0.0148147	0.119664	0.106702
chr2	206158783	206158883	1317918	0	-	0.38	(0.378,0.408]	chr2	138185	3	SS5_PROX	SS5_PROX:INTRON	NDUFS1	ENSG00000023228.14	ENST00000233190.11:ENST00000455934.6:ENST00000423725.5:ENST00000457011.5:ENST00000440274.5:ENST00000432169.5:ENST00000449699.5:ENST00000456284.5:ENST00000454195.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	57	2	1.58349	1.838755	2.09402	0.0653091	0.0126438	0.180158	0.0982897
chr3	33805715	33805815	1394450	0	+	0.4	(0.378,0.408]	chr3	146021	58	INTRON	INTRON	PDCD6IP	ENSG00000170248.15	ENST00000457054.6:ENST00000648706.1:ENST00000435909.5:ENST00000430877.5:ENST00000413073.1:ENST00000307296.8:ENST00000477798.5:ENST00000498147.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	57	2	1.58349	1.838755	2.09402	0.0653091	0.0126438	0.180158	0.0982897
chr7	107081994	107082093	3377540	0	+	0.40404	(0.378,0.408]	chr7	316248	113	INTRON	INTRON	PRKAR2B	ENSG00000005249.13	ENST00000265717.5:ENST00000393613.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	57	2	1.58349	1.838755	2.09402	0.0653091	0.0126438	0.180158	0.0982897
chr9	98835866	98835952	4173937	0	+	0.44186	(0.44,0.476]	chr9	380379	1	INTRON	INTRON	GALNT12	ENSG00000119514.7	ENST00000375011.4	protein_coding	protein_coding	protein_coding	protein_coding	19	154	2	1.52103	1.838635	2.15624	0.0087973	0.00245194	0.084878	0.0446192
chr12	116200969	116201069	5424781	0	-	0.38	(0.378,0.408]	chr12	518271	198	INTRON	INTRON	MED13L	ENSG00000123066.9	ENST00000281928.9:ENST00000650226.1:ENST00000548743.2:ENST00000647567.1:ENST00000551197.2	protein_coding	protein_coding	protein_coding	protein_coding	6	54	2	1.5653	1.8386200000000001	2.11194	0.043739	0.0292534	0.162255	0.128055
chr1	42948717	42948817	433042	0	-	0.53	(0.515,0.57]	chr1	52495	50	INTRON	INTRON	SLC2A1	ENSG00000117394.24	ENST00000426263.10:ENST00000630287.2:ENST00000675112.1:ENST00000674765.1:ENST00000625233.2:ENST00000372500.4:ENST00000415851.6:ENST00000630821.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	68	2	1.64356	1.83862	2.03368	0.024299	0.00803127	0.12011	0.0803474
chr1	114770376	114770476	528658	0	-	0.33	(0.32,0.35]	chr1	62378	10	UTR3	UTR3:EXON_MRNA	SIKE1	ENSG00000052723.12	ENST00000060969.6:ENST00000369528.9	protein_coding	protein_coding	protein_coding	protein_coding	10	105	2	1.79633	1.8385150000000001	1.8807	0.0177594	0.0106415	0.105629	0.0915714
chr1	21725699	21725796	396275	0	-	0.402062	(0.378,0.408]	chr1	47275	7	INTRON	INTRON	USP48	ENSG00000090686.16	ENST00000400301.5:ENST00000308271.14:ENST00000529637.5:ENST00000487880.2:ENST00000526044.5:ENST00000534705.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	23	192	2	1.53778	1.83804	2.1383	0.00624745	0.00207994	0.071965199999999993	0.0411801
chr19	34446015	34446114	7053303	0	+	0.444444	(0.44,0.476]	chr19	703531	5	INTRON	INTRON	UBA2	ENSG00000126261.13	ENST00000586313.1:ENST00000590048.6:ENST00000246548.9:ENST00000439527.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	21	172	2	1.46928	1.8380049999999999	2.20673	0.0100743	0.00136136	0.0883761	0.0336321
chr7	153413792	153413888	3682223	0	-	0.46875	(0.44,0.476]	chr7	341744	24	EXON_LNCRNA	EXON_LNCRNA	LINC01287	ENSG00000234722.5	ENST00000647863.1:ENST00000453187.2:ENST00000664249.1:ENST00000663745.1:ENST00000659532.1:ENST00000670362.1:ENST00000669043.1:ENST00000662626.1:ENST00000669109.1:ENST00000657245.1:ENST00000662979.1:ENST00000666243.1:ENST00000661522.1:ENST00000660414.1:ENST00000669159.1:ENST00000658753.1:ENST00000671302.1:ENST00000668024.1:ENST00000669370.1:ENST00000667969.1:ENST00000669818.1:ENST00000661082.1:ENST00000653989.1:ENST00000665909.1:ENST00000658825.1:ENST00000669410.1:ENST00000664034.1:ENST00000670343.1:ENST00000670691.1:ENST00000416982.1	lncRNA	lncRNA	lncRNA	lncRNA	31	256	2	1.50303	1.8377949999999998	2.17256	0.00666348	6.19207e-4	0.0704509	0.0223951
chr2	172584780	172584879	920194	0	+	0.353535	(0.35,0.378]	chr2	101374	136	INTRON	INTRON	PDK1	ENSG00000152256.14	ENST00000392571.6:ENST00000410055.5:ENST00000282077.8:ENST00000466437.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	76	2	1.48516	1.83775	2.19034	0.0259086	0.023941	0.133676	0.119443
chr18	2692051	2692149	6865233	0	+	0.397959	(0.378,0.408]	chr18	679980	9	INTRON	INTRON	SMCHD1	ENSG00000101596.17	ENST00000320876.11:ENST00000688342.1:ENST00000684915.1:ENST00000581226.1:ENST00000693213.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	54	2	1.6165	1.837735	2.05897	0.0374185	0.0339294	0.155878	0.134508
chr15	90968288	90968386	6259377	0	-	0.469388	(0.44,0.476]	chr15	597273	12	UTR3	UTR3:EXON_MRNA:INTRON	PRC1:ENSG00000284946	ENSG00000198901.14:ENSG00000284946.1	ENST00000394249.8:ENST00000556972.6:ENST00000361188.9:ENST00000643536.1:ENST00000555455.5:ENST00000560423.5:ENST00000442656.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	71	2	1.71574	1.83768	1.95962	0.045256	0.00707371	0.149888	0.0754923
chr17	82768419	82768492	6694367	0	+	0.534247	(0.515,0.57]	chr17	654845	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	TBCD	ENSG00000141556.22	ENST00000682479.1:ENST00000682722.1:ENST00000684464.1:ENST00000684544.1:ENST00000681983.1:ENST00000684361.1:ENST00000683184.1:ENST00000683282.1:ENST00000684408.1:ENST00000355528.9:ENST00000683444.1:ENST00000684776.1:ENST00000683041.1:ENST00000684760.1:ENST00000684349.1:ENST00000682213.1:ENST00000683009.1:ENST00000682921.1:ENST00000682107.1:ENST00000539345.6:ENST00000684000.1:ENST00000684188.1:ENST00000684429.1:ENST00000682934.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	83	2	1.77301	1.837555	1.9021	0.0109049	0.00848696	0.0873034	0.083161
chr22	38721541	38721641	7514467	0	+	0.44	(0.408,0.44]	chr22	767620	4	SS3_PROX	SS3_PROX:INTRON	GTPBP1	ENSG00000100226.16	ENST00000216044.10:ENST00000418601.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	63	2	1.7519	1.837545	1.92319	0.0247322	0.0239555	0.129259	0.12011
chr1	227258127	227258226	651116	0	-	0.50505	(0.476,0.515]	chr1	77108	36	INTRON	INTRON	CDC42BPA	ENSG00000143776.20	ENST00000366766.8:ENST00000366769.7:ENST00000334218.9:ENST00000366767.7:ENST00000366764.8:ENST00000478573.6:ENST00000682551.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	87	2	1.56702	1.8375	2.10798	0.0257979	0.00628634	0.121115	0.0722266
chr16	54922851	54922950	6488471	0	-	0.313131	(0.28,0.32]	chr16	627574	65	EXON_LNCRNA	EXON_LNCRNA:INTRON	CRNDE	ENSG00000245694.11	ENST00000613942.2:ENST00000661493.1:ENST00000668556.1:ENST00000660344.1:ENST00000502066.7:ENST00000559598.7:ENST00000688921.1:ENST00000501177.9:ENST00000661312.1:ENST00000689582.1:ENST00000558031.7:ENST00000689375.1:ENST00000691307.1:ENST00000657142.1:ENST00000557792.2:ENST00000559432.6:ENST00000655114.1:ENST00000560912.6:ENST00000558952.2	lncRNA	lncRNA	lncRNA	lncRNA	10	114	2	1.64082	1.837475	2.03413	0.0422774	0.00424188	0.148082	0.0595557
chr1	235295331	235295431	663534	0	-	0.44	(0.408,0.44]	chr1	78552	342	INTRON	INTRON	ARID4B	ENSG00000054267.22	ENST00000349213.7:ENST00000366603.6:ENST00000264183.9:ENST00000421364.5:ENST00000491632.5:ENST00000418304.1:ENST00000466653.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	55	2	1.64062	1.837465	2.03431	0.0557275	0.0154896	0.165463	0.108998
chr1	207327842	207327940	303330	0	+	0.326531	(0.32,0.35]	chr1	34907	4	INTRON	INTRON	CD55	ENSG00000196352.18	ENST00000695822.1:ENST00000695823.1:ENST00000695826.1:ENST00000695825.1:ENST00000695824.1:ENST00000367063.6:ENST00000695827.1:ENST00000695828.1:ENST00000645323.1:ENST00000391921.9:ENST00000695829.1:ENST00000367064.9:ENST00000314754.12:ENST00000644836.1:ENST00000343420.6:ENST00000476590.1:ENST00000465534.5:ENST00000488171.6:ENST00000618707.2:ENST00000635614.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	20	205	2	1.69069	1.83746	1.98423	0.00954093	0.00169646	0.0820614	0.0381936
chr14	101764455	101764554	5818521	0	+	0.444444	(0.44,0.476]	chr14	551813	11	INTRON	INTRON	PPP2R5C	ENSG00000078304.20	ENST00000694906.1:ENST00000422945.6:ENST00000554442.5:ENST00000556068.5:ENST00000556260.6:ENST00000328724.9:ENST00000554504.1:ENST00000553890.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	20	171	2	1.56025	1.837245	2.11424	0.00825324	0.00160011	0.0813266	0.0364977
chr9	37159536	37159636	4118049	0	+	0.35	(0.32,0.35]	chr9	375382	117	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000322831.6:ENST00000461038.5:ENST00000488607.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	131	2	1.73766	1.837125	1.93659	0.0108167	0.008138	0.087129	0.0810802
chr17	81548805	81548905	6848707	0	-	0.48	(0.476,0.515]	chr17	678071	2	SS5_PROX	SS5_PROX:INTRON	FAAP100	ENSG00000185504.17	ENST00000443656.6:ENST00000327787.13	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	65	2	1.74317	1.83708	1.93099	0.0396373	0.0140312	0.161534	0.0959618
chrX	71413429	71413528	7678718	0	+	0.313131	(0.28,0.32]	chrX	786269	49	INTRON	INTRON	TAF1	ENSG00000147133.17	ENST00000683202.1:ENST00000373790.9:ENST00000423759.6:ENST00000683782.1:ENST00000683668.1:ENST00000276072.9:ENST00000463163.5:ENST00000373775.8:ENST00000485087.6:ENST00000437147.8:ENST00000683358.1:ENST00000682124.1:ENST00000461764.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	125	2	1.41053	1.83704	2.26355	0.0501096	0.00229405	0.156383	0.0439319
chr11	83158976	83159073	4840812	0	+	0.391753	(0.378,0.408]	chr11	451494	2	INTRON	INTRON	PCF11	ENSG00000165494.12	ENST00000298281.8:ENST00000530660.5:ENST00000690938.1:ENST00000530304.5:ENST00000533018.1	protein_coding	protein_coding	protein_coding	protein_coding	5	49	2	1.77782	1.837015	1.89621	0.0488044	0.0388177	0.173377	0.143072
chr22	38490456	38490556	7587923	0	-	0.3	(0.28,0.32]	chr22	776723	11	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	DDX17	ENSG00000100201.23	ENST00000403230.3:ENST00000396821.8:ENST00000216019.11:ENST00000475004.6:ENST00000432525.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	31	341	2	1.82103	1.837015	1.853	0.00404123	0.00173904	0.0555561	0.0385334
chr15	89092934	89093032	6094610	0	+	0.55102	(0.515,0.57]	chr15	579963	22	INTRON	INTRON	ABHD2	ENSG00000140526.18	ENST00000569411.5:ENST00000569550.5:ENST00000564876.5:ENST00000565066.5:ENST00000565973.5:ENST00000352732.10:ENST00000565825.5:ENST00000562254.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	45	2	1.48539	1.836945	2.1885	0.0553982	0.0202537	0.165463	0.121364
chr5	53991513	53991613	2617719	0	-	0.45	(0.44,0.476]	chr5	248835	795	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	16	139	2	1.36258	1.8369	2.31122	0.0314675	5.48676e-4	0.13151	0.0213049
chr2	96635452	96635549	1181171	0	-	0.350515	(0.35,0.378]	chr2	126526	9	INTRON	INTRON	KANSL3	ENSG00000114982.19	ENST00000354204.10:ENST00000431828.6:ENST00000487070.5:ENST00000420155.5:ENST00000670907.1:ENST00000666923.1:ENST00000597150.5:ENST00000444759.5:ENST00000452268.5:ENST00000425656.5:ENST00000448075.1:ENST00000451819.5:ENST00000416138.1:ENST00000418735.1:ENST00000475820.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	69	2	1.6599	1.83684	2.01378	0.0545616	0.00952336	0.165292	0.0863913
chr11	70278195	70278294	4820485	0	+	0.494949	(0.476,0.515]	chr11	449381	54	INTRON	INTRON	PPFIA1	ENSG00000131626.19	ENST00000253925.12:ENST00000389547.7:ENST00000532504.5:ENST00000530746.1:ENST00000532024.1:ENST00000648755.1:ENST00000644155.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	63	2	1.40573	1.8368099999999998	2.26789	0.0410362	0.0176567	0.161534	0.105233
chr12	45961322	45961406	5315326	0	-	0.309524	(0.28,0.32]	chr12	505621	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SCAF11	ENSG00000139218.18	ENST00000369367.8:ENST00000547018.5:ENST00000266589.10:ENST00000395454.6:ENST00000395453.2	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay	5	58	2	1.81582	1.83677	1.85772	0.068122	0.0300199	0.184298	0.142135
chr1	6583761	6583857	5350	0	+	0.427083	(0.408,0.44]	chr1	1034	11	INTRON	INTRON	ZBTB48	ENSG00000204859.13	ENST00000377674.9:ENST00000488936.1	protein_coding	protein_coding	protein_coding	protein_coding	12	105	2	1.41479	1.836765	2.25874	0.0358053	0.00181031	0.138791	0.0393822
chr8	140960914	140961014	4079673	0	-	0.42	(0.408,0.44]	chr8	370582	62	INTRON	INTRON	PTK2	ENSG00000169398.20	ENST00000696786.1:ENST00000522684.5:ENST00000395218.3:ENST00000521059.5:ENST00000519993.5:ENST00000340930.7:ENST00000524357.5:ENST00000521791.5:ENST00000523067.5:ENST00000520828.5:ENST00000519881.5:ENST00000520892.5:ENST00000523803.5:ENST00000521907.5:ENST00000517453.5:ENST00000520045.5:ENST00000521332.5:ENST00000524040.5:ENST00000523679.1:ENST00000524257.5:ENST00000523797.1:ENST00000519635.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	47	2	1.74108	1.8367550000000001	1.93243	0.0441194	0.0424099	0.162255	0.148082
chr1	89849256	89849356	159808	0	+	0.31	(0.28,0.32]	chr1	17285	22	INTRON	INTRON	LRRC8D	ENSG00000171492.14	ENST00000525774.5:ENST00000337338.9:ENST00000394593.7:ENST00000532201.5:ENST00000414841.1:ENST00000527156.1:ENST00000441269.2	protein_coding	protein_coding	protein_coding	protein_coding	6	70	2	1.64432	1.83667	2.02902	0.0606133	0.0174423	0.171142	0.11269
chr11	31496108	31496208	4939106	0	-	0.35	(0.32,0.35]	chr11	462601	75	INTRON	INTRON	IMMP1L	ENSG00000148950.11	ENST00000532287.6:ENST00000534812.5:ENST00000526776.5:ENST00000278200.5:ENST00000648582.1:ENST00000533642.1:ENST00000527184.5:ENST00000528161.5:ENST00000532624.5:ENST00000529749.5:ENST00000530023.5:ENST00000531693.1:ENST00000532668.1:ENST00000533921.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	76	2	1.6309	1.836635	2.04237	0.0375542	0.0198698	0.140222	0.120668
chr2	151412036	151412136	893226	0	+	0.34	(0.32,0.35]	chr2	98878	3	INTRON	INTRON	RIF1	ENSG00000080345.18	ENST00000453091.6:ENST00000428287.6:ENST00000494333.1:ENST00000444746.7:ENST00000243326.9:ENST00000414861.6:ENST00000430328.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	76	2	1.6309	1.836635	2.04237	0.0375542	0.0198698	0.140222	0.120668
chr15	82396799	82396898	6075950	0	+	0.424242	(0.408,0.44]	chr15	578731	45	INTRON	INTRON	UBE2Q2P2	ENSG00000259429.5	ENST00000618775.4:ENST00000613592.4	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	14	91	2	1.10029	1.83662	2.57295	0.0523596	0.00640423	0.177734	0.0694534
chr16	24737573	24737673	6329292	0	+	0.29	(0.28,0.32]	chr16	605933	69	INTRON	INTRON	TNRC6A	ENSG00000090905.19	ENST00000566108.2:ENST00000395799.8:ENST00000315183.11:ENST00000562829.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	58	2	1.6633	1.836595	2.00989	0.0522231	0.0427801	0.177274	0.148082
chr9	98002887	98002983	4173237	0	+	0.416667	(0.408,0.44]	chr9	380287	1	INTRON	INTRON	ANP32B	ENSG00000136938.9	ENST00000339399.5:ENST00000473205.1:ENST00000486769.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	71	2	1.54151	1.8365399999999998	2.13157	0.0368312	0.0109031	0.138959	0.0923273
chr2	38365869	38365968	1099234	0	-	0.494949	(0.476,0.515]	chr2	117880	64	INTRON	INTRON	ATL2	ENSG00000119787.14	ENST00000378954.9:ENST00000406122.5:ENST00000405384.6:ENST00000402054.5:ENST00000419554.6:ENST00000651368.1:ENST00000452935.6:ENST00000449130.5:ENST00000443098.5:ENST00000456736.5:ENST00000472097.1:ENST00000451483.1:ENST00000416222.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	45	2	1.74317	1.836505	1.92984	0.0466474	0.0396373	0.161534	0.151522
chr4	23021569	23021669	1928338	0	+	0.48	(0.476,0.515]	chr4	193937	163	INTRON	INTRON	ENSG00000248837	ENSG00000248837.7	ENST00000659942.1:ENST00000655325.1:ENST00000655182.1:ENST00000660103.1:ENST00000506425.2:ENST00000652324.1:ENST00000653008.1:ENST00000654546.1:ENST00000666412.1:ENST00000511453.5:ENST00000667179.1:ENST00000655768.1:ENST00000661585.1:ENST00000660296.1:ENST00000663529.1:ENST00000653872.1:ENST00000660370.1:ENST00000667156.1:ENST00000658109.1:ENST00000653188.1:ENST00000662431.1:ENST00000654588.1:ENST00000666579.1:ENST00000503017.2:ENST00000665739.1:ENST00000671537.1:ENST00000663348.1	lncRNA	lncRNA	lncRNA	lncRNA	5	45	2	1.74317	1.836505	1.92984	0.0466474	0.0396373	0.161534	0.151522
chr6	7121278	7121378	2798498	0	+	0.48	(0.476,0.515]	chr6	263723	122	INTRON	INTRON	RREB1	ENSG00000124782.21	ENST00000379933.7:ENST00000491191.5:ENST00000471433.5:ENST00000379938.7:ENST00000467782.5:ENST00000349384.10:ENST00000334984.10:ENST00000475946.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	45	2	1.74317	1.836505	1.92984	0.0466474	0.0396373	0.161534	0.151522
chr11	66647456	66647555	4811122	0	+	0.444444	(0.44,0.476]	chr11	447908	11	INTRON	INTRON	RBM4	ENSG00000173933.21	ENST00000396053.9:ENST00000578778.5:ENST00000506523.6	protein_coding	protein_coding	protein_coding	protein_coding	14	124	2	1.77612	1.8365049999999998	1.89689	0.00750587	0.00630125	0.074841	0.0722266
chr12	76063779	76063879	5370009	0	-	0.35	(0.32,0.35]	chr12	512308	23	INTRON	INTRON	NAP1L1	ENSG00000187109.15	ENST00000618691.5:ENST00000552056.5:ENST00000393263.7:ENST00000431879.7:ENST00000552147.5:ENST00000547773.5:ENST00000544816.5:ENST00000542344.5:ENST00000535020.6:ENST00000549596.5:ENST00000552342.5:ENST00000547529.6:ENST00000548044.5:ENST00000550934.5:ENST00000551992.5:ENST00000548273.5:ENST00000551600.5:ENST00000547704.5:ENST00000551524.5:ENST00000549988.5:ENST00000547479.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	16	164	2	1.58878	1.8365049999999998	2.08423	0.0161796	0.00218213	0.101453	0.0435144
chr6	89831339	89831439	2916458	0	+	0.48	(0.476,0.515]	chr6	275598	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	CASP8AP2	ENSG00000118412.13	ENST00000552401.5:ENST00000419040.6:ENST00000547893.5:ENST00000237177.10:ENST00000551025.4:ENST00000548224.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	56	2	1.61586	1.8365	2.05714	0.0567093	0.0156961	0.185107	0.101453
chr22	21836334	21836433	7561073	0	-	0.383838	(0.378,0.408]	chr22	773388	281	INTRON	INTRON	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	13	116	2	1.34909	1.83642	2.32375	0.0389077	0.00134834	0.143072	0.0338207
chr1	16329404	16329504	382389	0	-	0.51	(0.476,0.515]	chr1	44888	136	INTRON	INTRON	FBXO42	ENSG00000037637.11	ENST00000375592.8	protein_coding	protein_coding	protein_coding	protein_coding	7	60	2	1.80755	1.8362349999999998	1.86492	0.0550347	0.0131326	0.165463	0.0999551
chr11	94481235	94481332	5018445	0	-	0.463918	(0.44,0.476]	chr11	473426	11	INTRON	INTRON	MRE11	ENSG00000020922.13	ENST00000323929.8:ENST00000407439.7:ENST00000323977.7:ENST00000393241.8:ENST00000540013.5:ENST00000541157.5:ENST00000536754.5:ENST00000538923.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	73	2	1.70242	1.836085	1.96975	0.0282713	0.0123514	0.137721	0.0914865
chr3	152451765	152451865	1536829	0	+	0.39	(0.378,0.408]	chr3	160043	25	INTRON	INTRON	MBNL1	ENSG00000152601.18	ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000324210.10:ENST00000493459.5:ENST00000545754.5:ENST00000357472.7:ENST00000324196.9:ENST00000498502.5:ENST00000463374.5:ENST00000485910.5:ENST00000465907.6:ENST00000492948.5:ENST00000485509.5:ENST00000464596.5:ENST00000478535.1:ENST00000460166.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	85	2	1.54765	1.836075	2.1245	0.0334147	0.00724232	0.146709	0.0729826
chr1	180688008	180688108	270156	0	+	0.33	(0.32,0.35]	chr1	31620	52	INTRON	INTRON	XPR1	ENSG00000143324.14	ENST00000367590.9:ENST00000367589.3	protein_coding	protein_coding	protein_coding	protein_coding	6	66	2	1.67393	1.83589	1.99785	0.0496128	0.0215554	0.174685	0.114686
chr2	54980127	54980227	1120698	0	-	0.21	[0,0.28]	chr2	120130	50	INTRON	INTRON	RTN4	ENSG00000115310.19	ENST00000394609.6:ENST00000404909.5:ENST00000394611.6:ENST00000317610.11:ENST00000357732.8:ENST00000337526.11:ENST00000357376.7:ENST00000405240.5:ENST00000486085.5:ENST00000438462.1	protein_coding	protein_coding	protein_coding	protein_coding	11	101	2	1.28404	1.8358050000000001	2.38757	0.0552962	0.04021	0.165463	0.161534
chr1	168012683	168012783	249259	0	+	0.39	(0.378,0.408]	chr1	29602	75	INTRON	INTRON	DCAF6	ENSG00000143164.16	ENST00000432587.6:ENST00000367843.7:ENST00000470721.5:ENST00000367840.4:ENST00000312263.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	83	2	1.71619	1.835765	1.95534	0.0300647	0.00731058	0.129153	0.076234
chr1	20774606	20774706	389736	0	-	0.41	(0.408,0.44]	chr1	46560	11	UTR5	UTR5:EXON_MRNA:INTRON	HP1BP3	ENSG00000127483.19	ENST00000438032.6:ENST00000312239.10:ENST00000375003.6:ENST00000419948.5:ENST00000424732.5:ENST00000417710.5	protein_coding	protein_coding	protein_coding	protein_coding	46	392	2	1.79339	1.8357649999999999	1.87814	0.00193418	4.25685e-4	0.039895	0.0184548
chr8	125949776	125949876	3859363	0	+	0.29	(0.28,0.32]	chr8	355335	67	INTRON	INTRON	ENSG00000286122	ENSG00000286122.1	ENST00000651999.1:ENST00000652177.1	lncRNA	lncRNA	lncRNA	lncRNA	9	98	2	1.2552	1.835725	2.41625	0.0765217	0.00419958	0.196163	0.0592209
chr12	130790099	130790199	5447752	0	-	0.44	(0.408,0.44]	chr12	521515	6	UTR3	UTR3:EXON_MRNA	STX2	ENSG00000111450.14	ENST00000261653.10:ENST00000392373.7	protein_coding	protein_coding	protein_coding	protein_coding	10	89	2	1.66104	1.83568	2.01032	0.0349715	0.00377558	0.13747500000000001	0.0562562
chr1	20743614	20743712	389417	0	-	0.336735	(0.32,0.35]	chr1	46510	35	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	HP1BP3	ENSG00000127483.19	ENST00000438032.6:ENST00000312239.10:ENST00000375003.6:ENST00000488722.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	161	1621	2	1.65846	1.835645	2.01283	0.00201579	9.84164e-5	0.04086	0.00834688
chr2	111492568	111492668	1211787	0	-	0.4	(0.378,0.408]	chr2	128941	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	MIR4435-2HG	ENSG00000172965.17	ENST00000645030.2:ENST00000642191.1:ENST00000673798.1:ENST00000645051.2:ENST00000673649.1:ENST00000669658.1:ENST00000669917.1:ENST00000661559.1:ENST00000653687.1:ENST00000667670.1:ENST00000609220.2:ENST00000656760.1:ENST00000609902.6:ENST00000666683.1:ENST00000674070.1:ENST00000662335.1:ENST00000664422.1:ENST00000673775.1:ENST00000674092.1:ENST00000673958.1:ENST00000658936.1:ENST00000662635.1:ENST00000666204.1:ENST00000659458.1:ENST00000664443.1:ENST00000670295.1:ENST00000661655.1:ENST00000666390.1:ENST00000659079.1:ENST00000660442.1:ENST00000664009.1:ENST00000439362.6:ENST00000654473.1:ENST00000664999.1:ENST00000673728.1:ENST00000659791.1:ENST00000666144.1:ENST00000659933.1:ENST00000670715.1:ENST00000653568.1:ENST00000643013.1:ENST00000673866.1:ENST00000443467.6:ENST00000669875.1:ENST00000673653.1:ENST00000673988.1:ENST00000661945.1:ENST00000669515.1:ENST00000431385.6:ENST00000656416.1:ENST00000674037.1:ENST00000432818.5:ENST00000674013.1:ENST00000444301.5:ENST00000673964.1:ENST00000673845.1:ENST00000673756.1:ENST00000673960.1:ENST00000673804.1:ENST00000673632.1:ENST00000453478.2:ENST00000673937.1:ENST00000673654.1:ENST00000409569.2:ENST00000674087.1:ENST00000419736.5:ENST00000673840.1:ENST00000674045.1:ENST00000643766.1:ENST00000308604.5:ENST00000604981.5:ENST00000673894.1:ENST00000441075.1:ENST00000673878.1:ENST00000673668.1:ENST00000432268.1	lncRNA	lncRNA	lncRNA	lncRNA	13	120	2	1.30976	1.835585	2.36141	0.0395315	0.0015918	0.161534	0.0364566
chr3	138764055	138764155	1830790	0	-	0.41	(0.408,0.44]	chr3	184051	43	INTRON	INTRON	PIK3CB	ENSG00000051382.9	ENST00000674063.1:ENST00000477593.5:ENST00000462898.5:ENST00000483968.5:ENST00000465581.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	55	2	1.74108	1.83555	1.93002	0.0424099	0.022095	0.148082	0.123903
chr3	197884162	197884262	1598679	0	+	0.56	(0.515,0.57]	chr3	165690	6	UTR3	UTR3:EXON_MRNA	LRCH3	ENSG00000186001.14	ENST00000438796.6:ENST00000425562.7	protein_coding	protein_coding	protein_coding	protein_coding	5	40	2	1.811	1.835535	1.86007	0.0526611	0.0325989	0.178401	0.133687
chr17	27123508	27123608	6580060	0	+	0.35	(0.32,0.35]	chr17	639586	267	INTRON	INTRON	ENSG00000285822	ENSG00000285822.1	ENST00000649401.1	lncRNA	lncRNA	lncRNA	lncRNA	5	53	2	1.72898	1.8355000000000001	1.94202	0.0486128	0.0425433	0.161951	0.153946
chr7	143298900	143298987	3441396	0	+	0.390805	(0.378,0.408]	chr7	320929	2	INTRON	INTRON	CASP2	ENSG00000106144.20	ENST00000619992.4:ENST00000310447.10:ENST00000350623.7:ENST00000493642.5:ENST00000472067.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	95	2	1.67073	1.8354249999999999	2.00012	0.0219426	0.00748818	0.123836	0.074841
chr1	149885026	149885121	549580	0	-	0.463158	(0.44,0.476]	chr1	64526	7	UTR3	UTR3:EXON_MRNA	H2BC21	ENSG00000184678.11	ENST00000369155.4	protein_coding	protein_coding	protein_coding	protein_coding	20	177	2	1.36518	1.835395	2.30561	0.0276663	2.15054e-4	0.123904	0.0128759
chr17	81580835	81580935	6849027	0	-	0.66	(0.57,1]	chr17	678158	84	INTRON	INTRON	NPLOC4	ENSG00000182446.14	ENST00000331134.11:ENST00000374747.9:ENST00000574897.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	37	2	1.79898	1.83535	1.87172	0.0206524	0.0152293	0.122348	0.0996307
chr19	48383022	48383112	7198948	0	-	0.322222	(0.32,0.35]	chr19	729758	6	UTR3	UTR3:EXON_MRNA	KDELR1	ENSG00000105438.9	ENST00000330720.7:ENST00000597017.5	protein_coding	protein_coding	protein_coding	protein_coding	28	248	2	1.32585	1.83529	2.34473	0.0140041	0.0010006	0.102611	0.0288906
chr10	46798763	46798859	4430844	0	+	0.364583	(0.35,0.378]	chr10	408538	2	INTRON	INTRON	BMS1P1	ENSG00000204177.11	ENST00000580094.5:ENST00000690946.1:ENST00000688259.1:ENST00000685496.1:ENST00000374336.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	6	60	2	1.5118	1.835285	2.15877	0.0789277	0.0102036	0.198963	0.089002
chr5	139565703	139565803	2500547	0	+	0.35	(0.32,0.35]	chr5	239026	29	INTRON	INTRON	UBE2D2	ENSG00000131508.16	ENST00000511725.5:ENST00000505007.5:ENST00000398733.8:ENST00000510470.1:ENST00000398734.8:ENST00000505548.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	74	2	1.63843	1.835205	2.03198	0.0360919	0.0193728	0.152563	0.108916
chr1	86966858	86966957	154116	0	+	0.393939	(0.378,0.408]	chr1	16962	80	INTRON	INTRON	HS2ST1	ENSG00000153936.18	ENST00000370550.10:ENST00000370551.8:ENST00000687893.1:ENST00000693745.1:ENST00000689904.1:ENST00000690674.1:ENST00000591456.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	57	2	1.77782	1.835165	1.89251	0.0388177	0.0251428	0.143072	0.133404
chr6	53292363	53292463	3107619	0	-	0.5	(0.476,0.515]	chr6	291035	4	SS3_PROX	SS3_PROX:INTRON	ELOVL5	ENSG00000012660.14	ENST00000370918.8:ENST00000542638.5:ENST00000304434.11:ENST00000485336.5:ENST00000465983.5:ENST00000486973.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	17	152	2	1.51299	1.83509	2.15719	0.0156736	0.0012506	0.109464	0.0323608
chr7	148858904	148859004	3670509	0	-	0.34	(0.32,0.35]	chr7	340628	112	INTRON	INTRON	EZH2	ENSG00000106462.12	ENST00000683292.1:ENST00000320356.7:ENST00000492143.5:ENST00000478654.5:ENST00000350995.6:ENST00000460911.5:ENST00000683744.1:ENST00000682317.1:ENST00000682263.1:ENST00000684300.1:ENST00000476773.5:ENST00000483967.5:ENST00000498186.5:ENST00000483012.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	114	2	1.66804	1.835075	2.00211	0.0271264	0.00445465	0.123904	0.0610799
chr2	235501543	235501643	1041410	0	+	0.43	(0.408,0.44]	chr2	111217	63	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	63	2	1.40374	1.834955	2.26617	0.0721345	0.00649402	0.187433	0.0734343
chr1	31926057	31926156	414312	0	-	0.414141	(0.408,0.44]	chr1	49920	15	INTRON	INTRON	PTP4A2	ENSG00000184007.22	ENST00000647444.2:ENST00000649841.1:ENST00000468531.1:ENST00000534796.5:ENST00000532289.1:ENST00000526960.1:ENST00000524384.5:ENST00000528840.1:ENST00000494444.2:ENST00000529477.5:ENST00000533408.1:ENST00000475464.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	17	138	2	1.63535	1.83493	2.03451	0.00626591	0.00579231	0.0685243	0.0684633
chr12	31282614	31282711	5302411	0	-	0.319588	(0.28,0.32]	chr12	504625	22	UTR3	UTR3:EXON_MRNA	SINHCAF	ENSG00000139146.14	ENST00000337682.9:ENST00000539409.5:ENST00000448582.6:ENST00000454658.6:ENST00000544921.5:ENST00000542983.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	74	2	1.52982	1.8349199999999999	2.14002	0.0379288	0.0304107	0.157212	0.130461
chr16	21430511	21430609	6460619	0	-	0.408163	(0.378,0.408]	chr16	623218	47	INTRON	INTRON	NPIPB3	ENSG00000169246.16	ENST00000521589.5:ENST00000534903.1:ENST00000545358.5:ENST00000543368.1:ENST00000544154.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	12	104	2	1.60112	1.8349199999999999	2.06872	0.0132298	0.00895678	0.0999551	0.0800073
chr11	85967841	85967940	5013798	0	-	0.373737	(0.35,0.378]	chr11	472906	67	INTRON	INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000530692.5:ENST00000526548.3:ENST00000630913.2:ENST00000529760.5:ENST00000528398.5:ENST00000532603.5:ENST00000356360.9:ENST00000529016.5:ENST00000526961.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	98	2	1.81752	1.834825	1.85213	0.0137208	0.0130467	0.0994973	0.0949306
chr12	110720854	110720947	5411303	0	-	0.301075	(0.28,0.32]	chr12	516708	8	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	PPP1CC	ENSG00000186298.12	ENST00000335007.10:ENST00000340766.9:ENST00000550261.5:ENST00000546904.1:ENST00000551582.1:ENST00000553024.1:ENST00000546933.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	33	359	2	1.67118	1.83478	1.99838	0.00327134	0.00212071	0.052643	0.0417073
chr7	12392896	12392994	3485331	0	-	0.397959	(0.378,0.408]	chr7	325964	32	INTRON	INTRON	VWDE	ENSG00000146530.15	ENST00000275358.8:ENST00000452576.6:ENST00000521169.5:ENST00000326715.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	58	2	1.72045	1.834755	1.94906	0.0424671	0.023282	0.161763	0.118176
chr6	147220458	147220558	2988868	0	+	0.32	(0.28,0.32]	chr6	280001	140	INTRON	INTRON	STXBP5	ENSG00000164506.15	ENST00000321680.11:ENST00000367481.7:ENST00000546097.5:ENST00000367480.7	protein_coding	protein_coding	protein_coding	protein_coding	11	122	2	1.41075	1.8346299999999998	2.25851	0.0359835	0.00557435	0.152355	0.0649303
chrX	101390935	101391035	7694838	0	+	0.54	(0.515,0.57]	chrX	787442	1	CDS_START	CDS_START:CDS:UTR5:EXON_MRNA	RPL36A	ENSG00000241343.10	ENST00000427805.6:ENST00000614077.4:ENST00000392994.7:ENST00000553110.8:ENST00000465340.5:ENST00000491851.5:ENST00000372849.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	86	2	1.38593	1.834625	2.28332	0.0554883	8.47265e-4	0.165463	0.026445
chr5	133988687	133988787	2725899	0	-	0.55	(0.515,0.57]	chr5	256443	74	INTRON	INTRON	VDAC1	ENSG00000213585.11	ENST00000265333.8:ENST00000395044.7:ENST00000395047.6:ENST00000425992.2	protein_coding	protein_coding	protein_coding	protein_coding	6	47	2	1.49871	1.83455	2.17039	0.0770828	0.00900252	0.196285	0.0851009
chr14	103136481	103136577	5825459	0	+	0.520833	(0.515,0.57]	chr14	552715	6	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TNFAIP2	ENSG00000185215.11	ENST00000333007.8:ENST00000560869.6:ENST00000559255.1:ENST00000561217.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	64	2	1.5060500000000001	1.83453	2.16301	0.0511812	0.00510122	0.176696	0.0626075
chr3	32749726	32749825	1393774	0	+	0.333333	(0.32,0.35]	chr3	145926	119	INTRON	INTRON	CNOT10	ENSG00000182973.20	ENST00000331889.10:ENST00000328834.10:ENST00000435630.5:ENST00000454516.7:ENST00000416457.5:ENST00000430408.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	64	2	1.64769	1.8345099999999999	2.02133	0.0578603	0.017146	0.167723	0.111072
chr11	770398	770497	4889659	0	-	0.59596	(0.57,1]	chr11	457805	1	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GATD1	ENSG00000177225.17	ENST00000465313.6:ENST00000319863.13:ENST00000397472.6:ENST00000528309.5:ENST00000354286.8:ENST00000526325.5:ENST00000526650.5:ENST00000524550.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	26	114	2	1.79044	1.8344749999999999	1.87851	0.00138097	0.00114562	0.0341261	0.0308287
chr1	29117991	29118089	61028	0	+	0.377551	(0.35,0.378]	chr1	7792	13	UTR3	UTR3:EXON_MRNA	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000649717.1:ENST00000373798.5:ENST00000343067.9:ENST00000460378.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	49	449	2	1.70551	1.83444	1.96337	0.00126467	9.95602e-4	0.0329703	0.0288906
chr2	108741674	108741772	847639	0	+	0.469388	(0.44,0.476]	chr2	94821	6	INTRON	INTRON	RANBP2	ENSG00000153201.16	ENST00000283195.11	protein_coding	protein_coding	protein_coding	protein_coding	8	53	2	1.20745	1.8344	2.46135	0.0635101	0.0374637	0.198164	0.140008
chr1	46101148	46101248	441803	0	-	0.42	(0.408,0.44]	chr1	53498	200	INTRON	INTRON	PIK3R3	ENSG00000117461.15	ENST00000372006.5:ENST00000262741.10:ENST00000420542.5:ENST00000423209.5:ENST00000493202.1:ENST00000425892.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	38	2	1.81572	1.8343850000000002	1.85305	0.0626779	0.0543543	0.182243	0.175915
chr1	75733918	75734015	144066	0	+	0.412371	(0.408,0.44]	chr1	16252	4	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	ACADM	ENSG00000117054.15	ENST00000679530.1:ENST00000680582.1:ENST00000473018.3:ENST00000680694.1:ENST00000541113.6:ENST00000681063.1:ENST00000681913.1:ENST00000680613.1:ENST00000680805.1:ENST00000681278.1:ENST00000681209.1:ENST00000680691.1:ENST00000681037.1:ENST00000679976.1:ENST00000680749.1:ENST00000681430.1:ENST00000681289.1:ENST00000680964.1:ENST00000679615.1:ENST00000681446.1:ENST00000681680.1:ENST00000681621.1:ENST00000681930.1:ENST00000679509.1:ENST00000680798.1:ENST00000680517.1:ENST00000525881.6:ENST00000681361.1:ENST00000681790.1:ENST00000681837.1:ENST00000680743.1:ENST00000681616.1:ENST00000680948.1:ENST00000681916.1:ENST00000526196.5:ENST00000526129.5:ENST00000679709.1:ENST00000370841.9:ENST00000370834.9:ENST00000680844.1:ENST00000532509.5:ENST00000681720.1:ENST00000681548.1:ENST00000681450.1:ENST00000679687.1:ENST00000530953.6:ENST00000680662.1:ENST00000679704.1:ENST00000525808.5:ENST00000534334.5:ENST00000679804.1:ENST00000420607.6:ENST00000680166.1:ENST00000681730.1:ENST00000529059.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	38	2	1.81572	1.8343850000000002	1.85305	0.0626779	0.0543543	0.182243	0.175915
chr11	118783766	118783865	5046296	0	-	0.434343	(0.408,0.44]	chr11	475799	22	INTRON	INTRON	DDX6	ENSG00000110367.14	ENST00000534980.7:ENST00000620157.4:ENST00000526070.2:ENST00000525082.1:ENST00000531971.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	38	2	1.81572	1.8343850000000002	1.85305	0.0626779	0.0543543	0.182243	0.175915
chr7	111286693	111286793	3621349	0	-	0.42	(0.408,0.44]	chr7	337093	3228	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	38	2	1.81572	1.8343850000000002	1.85305	0.0626779	0.0543543	0.182243	0.175915
chr8	100937738	100937837	4005826	0	-	0.414141	(0.408,0.44]	chr8	366668	28	INTRON	INTRON	YWHAZ	ENSG00000164924.18	ENST00000395958.6:ENST00000395957.6:ENST00000457309.2:ENST00000395956.7:ENST00000353245.7:ENST00000521309.5:ENST00000522542.5:ENST00000395953.6:ENST00000395948.6:ENST00000395951.7:ENST00000419477.6:ENST00000521607.5:ENST00000480304.5:ENST00000518736.5:ENST00000517727.5:ENST00000521328.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	38	2	1.81572	1.8343850000000002	1.85305	0.0626779	0.0543543	0.182243	0.175915
chr7	158650972	158651072	3688226	0	-	0.29	(0.28,0.32]	chr7	342135	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	NCAPG2	ENSG00000146918.20	ENST00000356309.8:ENST00000432615.5:ENST00000409423.5:ENST00000441982.5:ENST00000467785.5:ENST00000409339.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	70	2	1.72279	1.8343500000000001	1.94591	0.0496859	0.0228482	0.156383	0.125519
chr12	110381051	110381151	5408961	0	-	0.36	(0.35,0.378]	chr12	516421	20	INTRON	INTRON	ANAPC7	ENSG00000196510.14	ENST00000455511.9:ENST00000552087.1:ENST00000450008.3:ENST00000471602.6:ENST00000548234.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	17	162	2	1.62646	1.8342749999999999	2.04209	0.0112538	0.00246593	0.0884004	0.0459275
chr3	185925265	185925364	1886470	0	-	0.40404	(0.378,0.408]	chr3	188623	14	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	TRA2B	ENSG00000136527.19	ENST00000453386.7:ENST00000492417.5:ENST00000487615.5:ENST00000456380.5:ENST00000382191.4:ENST00000465245.1:ENST00000485530.5:ENST00000493864.1:ENST00000477939.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	13	119	2	1.59634	1.83426	2.07218	0.0244222	0.00201197	0.12011	0.0414778
chr17	78776608	78776708	6845779	0	-	0.38	(0.378,0.408]	chr17	677345	398	INTRON	INTRON	CYTH1	ENSG00000108669.17	ENST00000589296.5:ENST00000361101.8:ENST00000446868.8:ENST00000591455.5:ENST00000591574.5:ENST00000592497.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	83	2	1.41201	1.8340049999999999	2.256	0.0550809	0.00336115	0.165463	0.0532154
chr16	89796914	89797014	6544615	0	-	0.5	(0.476,0.515]	chr16	634567	5	INTRON	INTRON	FANCA	ENSG00000187741.16	ENST00000561667.2:ENST00000389301.8:ENST00000568369.6:ENST00000564475.6:ENST00000696275.1:ENST00000696287.1:ENST00000696286.1:ENST00000696274.1:ENST00000696291.1:ENST00000696276.1:ENST00000567205.2:ENST00000567284.7:ENST00000696277.1:ENST00000696292.1:ENST00000563767.2:ENST00000567621.6:ENST00000566409.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	72	2	1.73688	1.8339349999999999	1.93099	0.0252731	0.0140312	0.133676	0.0959618
chr7	158779160	158779259	3689304	0	-	0.333333	(0.32,0.35]	chr7	342393	54	INTRON	INTRON	ESYT2	ENSG00000117868.18	ENST00000251527.10:ENST00000275418.13:ENST00000652148.1:ENST00000483958.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	103	2	1.20203	1.833895	2.46576	0.0583213	0.00423072	0.189131	0.0572185
chr20	47240135	47240234	7348332	0	-	0.515152	(0.476,0.515]	chr20	749270	6	INTRON	INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000467200.6:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000468376.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	117	2	1.80755	1.833835	1.86012	0.0131326	0.00510771	0.0999551	0.0626805
chr5	179622376	179622476	2779770	0	-	0.53	(0.515,0.57]	chr5	262332	4	SS3_PROX	SS3_PROX:INTRON	HNRNPH1	ENSG00000169045.17	ENST00000329433.11:ENST00000393432.9:ENST00000356731.9:ENST00000442819.6:ENST00000514332.5:ENST00000510411.5:ENST00000510678.5:ENST00000514731.5:ENST00000503105.5:ENST00000504779.6:ENST00000508103.5:ENST00000506721.5:ENST00000523137.5:ENST00000505811.5:ENST00000510431.5:ENST00000519056.5:ENST00000504348.5:ENST00000513225.5:ENST00000524180.5:ENST00000513972.5:ENST00000519707.5:ENST00000519455.5:ENST00000515158.5:ENST00000521116.5:ENST00000505087.1:ENST00000515714.5:ENST00000512273.5:ENST00000503664.1:ENST00000630639.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	74	528	2	1.8111	1.83382	1.85654	4.55689e-4	2.64015e-4	0.0196892	0.0144037
chr17	28062867	28062967	6582723	0	+	0.29	(0.28,0.32]	chr17	639837	9	INTRON	INTRON	NLK	ENSG00000087095.13	ENST00000407008.8:ENST00000496808.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	105	2	1.51821	1.833815	2.14942	0.0249506	0.0143412	0.132531	0.0966737
chr16	88947922	88948022	6541006	0	-	0.34	(0.32,0.35]	chr16	634104	62	INTRON	INTRON	CBFA2T3	ENSG00000129993.15	ENST00000268679.9:ENST00000563640.1:ENST00000570046.1	protein_coding	protein_coding	protein_coding	protein_coding	6	64	2	1.69107	1.833805	1.97654	0.0517392	0.0199113	0.159306	0.120668
chr22	31745798	31745898	7579641	0	-	0.33	(0.32,0.35]	chr22	775674	65	INTRON	INTRON	PRR14L	ENSG00000183530.14	ENST00000327423.11:ENST00000461722.1:ENST00000412743.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	64	2	1.69107	1.833805	1.97654	0.0517392	0.0199113	0.159306	0.120668
chr17	30750720	30750819	6589995	0	+	0.393939	(0.378,0.408]	chr17	640860	70	INTRON	INTRON	SUZ12P1	ENSG00000264538.7	ENST00000578070.5:ENST00000579526.5:ENST00000690405.1:ENST00000497969.6:ENST00000578195.6:ENST00000582557.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	10	85	2	1.4946	1.83378	2.17296	0.024523	0.0110512	0.131869	0.0873897
chr1	39861112	39861212	428047	0	-	0.38	(0.378,0.408]	chr1	52020	33	INTRON	INTRON	TRIT1	ENSG00000043514.17	ENST00000316891.10:ENST00000648678.1:ENST00000537440.5:ENST00000372818.5:ENST00000462797.5:ENST00000441669.6:ENST00000495175.6:ENST00000491865.5:ENST00000541099.5:ENST00000492612.6:ENST00000489945.5:ENST00000486825.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	47	2	1.78011	1.8336999999999999	1.88729	0.0532327	0.0356367	0.162538	0.151629
chr8	9004994	9005093	3695578	0	+	0.333333	(0.32,0.35]	chr8	342900	3	INTRON	INTRON	ERI1	ENSG00000104626.15	ENST00000519292.5:ENST00000521844.1:ENST00000250263.8:ENST00000520684.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	53	2	1.83315	1.833655	1.83416	0.0631198	0.0313348	0.176946	0.144381
chrX	123620374	123620460	7877890	0	-	0.395349	(0.378,0.408]	chrX	802425	1	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	THOC2	ENSG00000125676.20	ENST00000448128.5:ENST00000245838.13:ENST00000441692.5:ENST00000618150.4:ENST00000432353.5:ENST00000355725.8:ENST00000416618.5:ENST00000491737.5:ENST00000464992.6:ENST00000464604.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	47	2	1.72045	1.8336299999999999	1.94681	0.0457723	0.0424671	0.161763	0.149888
chr6	157382566	157382666	3011556	0	+	0.58	(0.57,1]	chr6	281267	3	SS5_PROX	SS5_PROX:INTRON	ZDHHC14	ENSG00000175048.17	ENST00000414563.6:ENST00000359775.10	protein_coding	protein_coding	protein_coding	protein_coding	5	24	2	1.77365	1.83358	1.89351	0.0670385	0.0255126	0.183051	0.133676
chr9	92277362	92277462	4287177	0	-	0.47	(0.44,0.476]	chr9	394230	1	SS5_PROX	SS5_PROX:INTRON	IARS1	ENSG00000196305.19	ENST00000375643.7:ENST00000443024.7:ENST00000447699.7:ENST00000683537.1:ENST00000684726.1:ENST00000683192.1:ENST00000683565.1:ENST00000682756.1:ENST00000684542.1:ENST00000683793.1:ENST00000683817.1:ENST00000682141.1:ENST00000682893.1:ENST00000684557.1:ENST00000498025.2:ENST00000682156.1:ENST00000627121.3:ENST00000683469.1:ENST00000683495.1:ENST00000682578.1:ENST00000682533.1:ENST00000472894.2:ENST00000684757.1:ENST00000684445.1:ENST00000683376.1:ENST00000683679.1:ENST00000683119.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	72	2	1.61163	1.833545	2.05546	0.0598319	0.00467486	0.169278	0.0631417
chr11	28129357	28129456	4752368	0	+	0.272727	[0,0.28]	chr11	440090	36	INTRON	INTRON	METTL15	ENSG00000169519.21	ENST00000406787.7:ENST00000451385.6:ENST00000407364.8:ENST00000532947.2:ENST00000634627.1:ENST00000634973.1:ENST00000303459.10:ENST00000634721.1:ENST00000634762.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	92	2	1.80873	1.83353	1.85833	0.0378973	0.0234525	0.141283	0.128429
chr9	94175464	94175564	4161161	0	+	0.34	(0.32,0.35]	chr9	379418	2	SS3_PROX	SS3_PROX:INTRON	MIRLET7A1HG	ENSG00000269929.4	ENST00000652769.1:ENST00000652620.1:ENST00000602703.1:ENST00000660581.1	lncRNA	lncRNA	lncRNA	lncRNA	5	53	2	1.67393	1.8335	1.99307	0.0496128	0.04271	0.174685	0.148082
chr16	47615567	47615666	6344861	0	+	0.484848	(0.476,0.515]	chr16	608945	43	INTRON	INTRON	PHKB	ENSG00000102893.17	ENST00000566044.5:ENST00000299167.12:ENST00000696809.1:ENST00000323584.10:ENST00000568439.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	52	2	1.73688	1.8333599999999999	1.92984	0.0466474	0.0252731	0.151522	0.133676
chr2	32521461	32521561	732495	0	+	0.51	(0.476,0.515]	chr2	84591	4	SS3_PROX	SS3_PROX:INTRON	BIRC6	ENSG00000115760.15	ENST00000421745.7:ENST00000648282.1	protein_coding	protein_coding	protein_coding	protein_coding	9	79	2	1.52278	1.833335	2.14389	0.0384487	0.00540862	0.142348	0.066545000000000007
chr5	146485127	146485227	2515899	0	+	0.45	(0.44,0.476]	chr5	240369	11	INTRON	INTRON	TCERG1	ENSG00000113649.13	ENST00000296702.9:ENST00000679501.2:ENST00000394421.7:ENST00000549332.1:ENST00000515203.5:ENST00000506524.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	72	2	1.47433	1.8333149999999998	2.1923	0.0595438	0.0043698	0.16883600000000001	0.0604104
chr1	50924779	50924879	451901	0	-	0.47	(0.44,0.476]	chr1	54267	664	INTRON	INTRON	FAF1	ENSG00000185104.21	ENST00000396153.7:ENST00000487898.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	71	2	1.63371	1.8331849999999998	2.03266	0.0271664	0.0155853	0.123904	0.109411
chr16	81385742	81385841	6404945	0	+	0.414141	(0.408,0.44]	chr16	615020	83	UTR3	UTR3:EXON_MRNA	GAN	ENSG00000261609.8	ENST00000648994.2	protein_coding	protein_coding	protein_coding	protein_coding	8	72	2	1.73753	1.83312	1.92871	0.0275537	0.0127189	0.123904	0.0986242
chr18	26078660	26078743	6959611	0	-	0.46988	(0.44,0.476]	chr18	688469	1	SS5_PROX	SS5_PROX:INTRON	SS18	ENSG00000141380.14	ENST00000415083.7:ENST00000542420.6:ENST00000579640.5:ENST00000269138.9:ENST00000269137.11:ENST00000585121.5:ENST00000539244.6:ENST00000585241.5:ENST00000578954.5:ENST00000579061.5:ENST00000577636.5:ENST00000584083.5:ENST00000578700.5:ENST00000582792.5:ENST00000581021.5:ENST00000577572.5:ENST00000582448.5:ENST00000581570.5:ENST00000577751.5:ENST00000580751.5:ENST00000580642.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	72	2	1.7965	1.833045	1.86959	0.0205549	0.0176166	0.122348	0.105146
chr12	103935257	103935354	5208378	0	+	0.474227	(0.44,0.476]	chr12	492925	11	EXON_MRNA	EXON_MRNA:INTRON	HSP90B1	ENSG00000166598.16	ENST00000550595.2:ENST00000681861.1:ENST00000680899.1:ENST00000680391.1:ENST00000680653.1:ENST00000679779.1:ENST00000680281.1:ENST00000681949.1:ENST00000680989.1:ENST00000614327.2:ENST00000680762.1:ENST00000680663.1:ENST00000681172.1:ENST00000640977.2:ENST00000540297.7:ENST00000681941.1:ENST00000681910.1:ENST00000681704.1:ENST00000679377.1:ENST00000299767.10:ENST00000681174.1:ENST00000680370.1:ENST00000679538.1:ENST00000681698.1:ENST00000680242.1:ENST00000548462.5:ENST00000680316.1:ENST00000679861.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	77	2	1.80702	1.83303	1.85904	0.029889	0.00924948	0.129138	0.0855292
chr11	64311964	64312063	4802950	0	+	0.545455	(0.515,0.57]	chr11	445644	41	INTRON	INTRON	ESRRA	ENSG00000173153.17	ENST00000406310.6:ENST00000000442.11:ENST00000677967.1:ENST00000539594.5:ENST00000405666.5	protein_coding	protein_coding	protein_coding	protein_coding	8	60	2	1.60369	1.832875	2.06206	0.027865	0.0135396	0.124158	0.101363
chr1	65573347	65573446	138723	0	+	0.313131	(0.28,0.32]	chr1	15518	5	INTRON	INTRON	LEPR	ENSG00000116678.20	ENST00000371060.7:ENST00000371059.7:ENST00000349533.11:ENST00000616738.4:ENST00000344610.12:ENST00000462765.5:ENST00000371058.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	48	2	1.76293	1.83278	1.90263	0.0766478	0.0503272	0.196164	0.17488
chr2	30469709	30469809	727044	0	+	0.53	(0.515,0.57]	chr2	83971	96	INTRON	INTRON	LCLAT1	ENSG00000172954.14	ENST00000466477.5:ENST00000465200.5:ENST00000319406.8:ENST00000379509.8:ENST00000491680.6:ENST00000488144.5:ENST00000465538.5:ENST00000309052.8:ENST00000478015.5:ENST00000476038.5:ENST00000497423.1:ENST00000476535.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	39	2	1.63184	1.832725	2.03361	0.0545832	0.0325854	0.165292	0.145164
chr22	50520501	50520594	7545371	0	+	0.473118	(0.44,0.476]	chr22	771191	2	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	NCAPH2	ENSG00000025770.19	ENST00000420993.7:ENST00000395701.7:ENST00000523045.5:ENST00000299821.15:ENST00000520297.5:ENST00000522048.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	11	99	2	1.20796	1.8327149999999999	2.45747	0.0783119	6.55527e-4	0.197588	0.0232396
chr20	50598704	50598803	7354498	0	-	0.494949	(0.476,0.515]	chr20	750001	6	INTRON	INTRON	RIPOR3	ENSG00000042062.13	ENST00000327979.8:ENST00000045083.6:ENST00000462493.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	11	93	2	1.26204	1.8324699999999998	2.4029	0.0570171	0.0016811	0.167723	0.0381232
chr7	75523806	75523906	3559108	0	-	0.5	(0.476,0.515]	chr7	331602	72	INTRON	INTRON	PMS2P3	ENSG00000127957.19	ENST00000693762.1:ENST00000394921.8:ENST00000430602.5:ENST00000418756.5:ENST00000437568.6:ENST00000533167.5:ENST00000691440.1:ENST00000422064.1:ENST00000438326.2	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript	7	58	2	1.61324	1.8323900000000002	2.05154	0.0336015	0.026684	0.134419	0.134145
chr1	54047921	54048013	461541	0	-	0.402174	(0.378,0.408]	chr1	55612	7	UTR5	UTR5:EXON_MRNA:INTRON	TMEM59	ENSG00000116209.12	ENST00000234831.10:ENST00000371348.5:ENST00000371341.5:ENST00000440019.5:ENST00000420738.5:ENST00000452421.5:ENST00000371337.3	protein_coding	protein_coding	protein_coding	protein_coding	16	144	2	1.75854	1.83235	1.90616	0.0106517	0.00266058	0.0861859	0.0476028
chr6	34674954	34675054	3086002	0	-	0.55	(0.515,0.57]	chr6	288696	31	INTRON	INTRON	ILRUN	ENSG00000196821.10	ENST00000374026.7:ENST00000374023.8	protein_coding	protein_coding	protein_coding	protein_coding	6	45	2	1.79385	1.832275	1.8707	0.0523213	0.0201222	0.160182	0.121243
chr17	20874855	20874954	6576127	0	+	0.191919	[0,0.28]	chr17	639372	58	INTRON	INTRON	CCDC144NL-AS1	ENSG00000233098.10	ENST00000577537.5:ENST00000692759.1:ENST00000443508.8:ENST00000692309.1:ENST00000439794.6:ENST00000417232.6:ENST00000583962.2:ENST00000582324.5:ENST00000577860.5	lncRNA	lncRNA	lncRNA	lncRNA	7	86	2	1.68134	1.832125	1.98291	0.0494143	0.0251592	0.156195	0.133479
chr7	10739498	10739598	3484175	0	-	0.34	(0.32,0.35]	chr7	325772	1776	INTRON	INTRON	MGC4859	ENSG00000283117.1	ENST00000634803.1	lncRNA	lncRNA	lncRNA	lncRNA	16	163	2	1.77209	1.831945	1.8918	0.0072465	0.00571838	0.072984	0.0681402
chr16	21510432	21510532	6461461	0	-	0.43	(0.408,0.44]	chr16	623383	39	INTRON	INTRON	SMG1P3	ENSG00000180747.15	ENST00000522841.6:ENST00000437413.2:ENST00000435197.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	14	122	2	1.75902	1.83193	1.90484	0.0132052	0.00332513	0.0940535	0.052877
chr6	34351970	34352070	3084367	0	-	0.44	(0.408,0.44]	chr6	288633	96	INTRON	INTRON	NUDT3:RPS10-NUDT3	ENSG00000272325.2:ENSG00000270800.3	ENST00000607016.2:ENST00000639725.1:ENST00000639877.1:ENST00000605528.2	protein_coding	protein_coding	protein_coding	protein_coding	11	97	2	1.76523	1.8319100000000001	1.89859	0.0174785	0.00624957	0.10482	0.0719778
chr7	50600609	50600709	3530721	0	-	0.35	(0.32,0.35]	chr7	329388	47	INTRON	INTRON	GRB10	ENSG00000106070.20	ENST00000335866.7:ENST00000398812.6:ENST00000398810.6:ENST00000401949.6:ENST00000402578.5:ENST00000644769.1:ENST00000403097.6:ENST00000644879.1:ENST00000406641.5:ENST00000402497.6:ENST00000357271.9:ENST00000643299.1:ENST00000407526.6:ENST00000645075.2:ENST00000473696.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	64	2	1.55682	1.831885	2.10695	0.0724487	0.0127483	0.188101	0.0987441
chr12	54278815	54278913	5330886	0	-	0.367347	(0.35,0.378]	chr12	508638	3	EXON_LNCRNA	EXON_LNCRNA:INTRON	CBX5:ENSG00000289154	ENSG00000094916.16:ENSG00000289154.1	ENST00000209875.9:ENST00000618078.1:ENST00000692885.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA:processed_transcript	9	87	2	1.74826	1.831875	1.91549	0.0279529	0.00887698	0.124524	0.0849778
chr12	70242707	70242806	5359434	0	-	0.434343	(0.408,0.44]	chr12	511755	49	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PRANCR	ENSG00000257815.8	ENST00000549419.6:ENST00000668518.1:ENST00000676451.1:ENST00000689831.1:ENST00000675475.1:ENST00000552998.2:ENST00000550216.1:ENST00000656495.2:ENST00000687691.1:ENST00000688862.1:ENST00000686072.1:ENST00000553135.2:ENST00000670041.1:ENST00000685441.1:ENST00000689026.1:ENST00000691701.1:ENST00000686795.1:ENST00000549651.1:ENST00000685914.1:ENST00000688957.1:ENST00000689780.1:ENST00000687747.1:ENST00000691730.1:ENST00000687860.1:ENST00000686629.1:ENST00000686060.1:ENST00000690353.1:ENST00000693282.1	lncRNA	lncRNA	lncRNA	lncRNA	6	55	2	1.78881	1.831855	1.8749	0.0370259	0.0264246	0.139194	0.133676
chr9	94169775	94169875	4161104	0	+	0.33	(0.32,0.35]	chr9	379417	30	INTRON	INTRON	MIRLET7A1HG	ENSG00000269929.4	ENST00000652769.1:ENST00000652620.1:ENST00000602703.1:ENST00000660581.1	lncRNA	lncRNA	lncRNA	lncRNA	6	64	2	1.73318	1.831745	1.93031	0.0462868	0.0231421	0.150684	0.126939
chr5	72912485	72912584	2388118	0	+	0.292929	(0.28,0.32]	chr5	230509	39	UTR3	UTR3:EXON_MRNA	TNPO1	ENSG00000083312.19	ENST00000680533.1:ENST00000337273.10:ENST00000680025.1:ENST00000681711.1:ENST00000679378.1:ENST00000680111.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	131	2	1.25249	1.8317200000000002	2.41095	0.0515126	0.00308492	0.176696	0.0496985
chr2	126663151	126663251	862079	0	+	0.48	(0.476,0.515]	chr2	96613	45	INTRON	INTRON	GYPC	ENSG00000136732.16	ENST00000459787.1:ENST00000259254.9:ENST00000409836.3:ENST00000356887.12	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	62	2	1.4553	1.831595	2.20789	0.0623645	0.00820497	0.175357	0.081115
chr5	70201367	70201467	2637919	0	-	0.49	(0.476,0.515]	chr5	250589	1	SS5_PROX	SS5_PROX:INTRON	ENSG00000254701	ENSG00000254701.3	ENST00000508650.2	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	7	62	2	1.68907	1.8315450000000002	1.97402	0.0296007	0.0206778	0.142135	0.110999
chr9	131422204	131422304	4217251	0	+	0.48	(0.476,0.515]	chr9	386720	276	INTRON	INTRON	PRRC2B	ENSG00000288701.1	ENST00000682525.1:ENST00000684596.1:ENST00000683519.1:ENST00000682501.1	protein_coding	protein_coding	protein_coding	protein_coding	7	62	2	1.68907	1.8315450000000002	1.97402	0.0296007	0.0206778	0.142135	0.110999
chr2	25869091	25869191	1085448	0	-	0.49	(0.476,0.515]	chr2	115962	232	INTRON	INTRON	ASXL2	ENSG00000143970.18	ENST00000435504.9:ENST00000336112.9:ENST00000682588.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	62	2	1.54629	1.83154	2.11679	0.0484352	0.0115627	0.153635	0.0962115
chr5	87390996	87391095	2668693	0	-	0.40404	(0.378,0.408]	chr5	252553	140	INTRON	INTRON	CCNH	ENSG00000134480.16	ENST00000645953.1:ENST00000646883.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	6	50	2	1.29877	1.831525	2.36428	0.0751206	0.0441088	0.19367	0.162255
chrX	9525295	9525395	7619257	0	+	0.29	(0.28,0.32]	chrX	779944	231	INTRON	INTRON	TBL1X	ENSG00000101849.18	ENST00000407597.7:ENST00000380961.5:ENST00000424279.6:ENST00000645353.2:ENST00000422314.5	protein_coding	protein_coding	protein_coding	protein_coding	6	70	2	1.76048	1.831485	1.90249	0.0450149	0.0261803	0.149888	0.133676
chr19	4418376	4418476	7001921	0	+	0.43	(0.408,0.44]	chr19	694528	3	SS5_PROX	SS5_PROX:INTRON	CHAF1A	ENSG00000167670.16	ENST00000301280.10:ENST00000587739.1:ENST00000585371.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	52	2	1.60344	1.831455	2.05947	0.0387506	0.0333232	0.160156	0.134145
chr5	6599630	6599728	2566424	0	-	0.357143	(0.35,0.378]	chr5	245872	5	UTR3	UTR3:EXON_MRNA	NSUN2	ENSG00000037474.15	ENST00000264670.11:ENST00000504374.5:ENST00000505892.5:ENST00000513888.5:ENST00000506139.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	116	2	1.79087	1.83141	1.87195	0.0126818	0.00738821	0.0926667	0.0769106
chr3	15783052	15783152	1623672	0	-	0.31	(0.28,0.32]	chr3	168013	10	INTRON	INTRON	ANKRD28	ENSG00000206560.12	ENST00000399451.6:ENST00000624145.3:ENST00000683139.1:ENST00000412318.5:ENST00000497037.5:ENST00000451422.1:ENST00000498524.5:ENST00000439830.5:ENST00000461696.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	74	2	1.56481	1.831375	2.09794	0.0340483	0.0339805	0.146815	0.134863
chr3	31583477	31583577	1391905	0	+	0.3	(0.28,0.32]	chr3	145698	30	INTRON	INTRON	STT3B	ENSG00000163527.10	ENST00000453168.5:ENST00000295770.4:ENST00000423527.5:ENST00000462235.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	50	2	1.47299	1.8313700000000002	2.18975	0.0776042	0.0597769	0.196285	0.189982
chr1	23778813	23778875	44779	0	+	0.612903	(0.57,1]	chr1	5443	1	SS5_PROX	SS5_PROX:INTRON	PITHD1	ENSG00000057757.10	ENST00000246151.9	protein_coding	protein_coding	protein_coding	protein_coding	6	27	2	1.52818	1.831315	2.13445	0.0508101	0.0241482	0.175989	0.12011
chr22	21502563	21502662	7560116	0	-	0.606061	(0.57,1]	chr22	773318	101	INTRON	INTRON	PI4KAP2	ENSG00000183506.17	ENST00000450651.5:ENST00000467443.5:ENST00000479693.1:ENST00000476537.1:ENST00000491562.5	transcribed_unitary_pseudogene	retained_intron	transcribed_unitary_pseudogene	retained_intron:processed_transcript	6	27	2	1.52818	1.831315	2.13445	0.0508101	0.0241482	0.175989	0.12011
chr1	161518543	161518642	235223	0	+	0.353535	(0.35,0.378]	chr1	28351	5	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	FCGR2A	ENSG00000143226.15	ENST00000367972.8:ENST00000271450.12:ENST00000483665.6:ENST00000467525.5:ENST00000461298.1:ENST00000459885.1:ENST00000486608.1:ENST00000491841.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	33	316	2	1.59983	1.831305	2.06278	0.00417474	8.28086e-4	0.0591344	0.0266389
chr19	40279931	40280028	7183698	0	-	0.57732000000000006	(0.57,1]	chr19	726532	3	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	AKT2	ENSG00000105221.18	ENST00000392038.7:ENST00000424901.5:ENST00000391844.8:ENST00000584288.5:ENST00000579047.5:ENST00000487537.3:ENST00000486368.6:ENST00000596634.5:ENST00000452077.5:ENST00000578123.5:ENST00000672890.1:ENST00000423127.5:ENST00000358335.9:ENST00000456441.5:ENST00000583859.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	33	2	1.79063	1.831175	1.87172	0.0356001	0.0152293	0.15159	0.0996307
chr9	133261874	133261936	4369897	0	-	0.435484	(0.408,0.44]	chr9	402063	1	SS5_PROX	SS5_PROX:INTRON	ABO	ENSG00000175164.16	ENST00000679909.1:ENST00000453660.4:ENST00000647353.1:ENST00000611156.4:ENST00000538324.2:ENST00000651471.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	70	2	1.39614	1.8311549999999999	2.26617	0.0567929	0.00649402	0.167723	0.0734343
chr20	32788753	32788853	7256927	0	+	0.54	(0.515,0.57]	chr20	737153	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	DNMT3B	ENSG00000088305.19	ENST00000696232.1:ENST00000328111.6:ENST00000696231.1:ENST00000348286.6:ENST00000353855.6:ENST00000696233.1:ENST00000443239.7:ENST00000696234.1:ENST00000696235.1:ENST00000456297.6:ENST00000696236.1:ENST00000201963.3:ENST00000696238.1:ENST00000696239.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	82	2	1.64662	1.831115	2.01561	0.0178544	0.00518674	0.106151	0.0654085
chr19	34398628	34398725	7052839	0	+	0.391753	(0.378,0.408]	chr19	703425	15	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	GPI	ENSG00000105220.17	ENST00000415930.8:ENST00000588991.7:ENST00000356487.11:ENST00000647446.1:ENST00000586425.2:ENST00000643067.1:ENST00000586392.1:ENST00000586077.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	47	2	1.65821	1.831095	2.00398	0.0506302	0.0393906	0.17547	0.143072
chr5	141635999	141636090	2740360	0	-	0.384615	(0.378,0.408]	chr5	258224	2	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	HDAC3	ENSG00000171720.10	ENST00000305264.8:ENST00000523088.5:ENST00000519474.5:ENST00000495485.1:ENST00000492506.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	47	2	1.65821	1.831095	2.00398	0.0506302	0.0393906	0.17547	0.143072
chr6	140213866	140213966	2968594	0	+	0.39	(0.378,0.408]	chr6	279015	648	INTRON	INTRON	ENSG00000288714	ENSG00000288714.1	ENST00000683950.1	lncRNA	lncRNA	lncRNA	lncRNA	5	47	2	1.65821	1.831095	2.00398	0.0506302	0.0393906	0.17547	0.143072
chr7	38748596	38748695	3521320	0	-	0.393939	(0.378,0.408]	chr7	328383	26	INTRON	INTRON	VPS41	ENSG00000006715.16	ENST00000310301.9:ENST00000395969.6	protein_coding	protein_coding	protein_coding	protein_coding	5	47	2	1.65821	1.831095	2.00398	0.0506302	0.0393906	0.17547	0.143072
chr3	33433337	33433437	1651642	0	-	0.52	(0.515,0.57]	chr3	169400	72	INTRON	INTRON	UBP1	ENSG00000153560.12	ENST00000283629.8:ENST00000447368.6:ENST00000283628.9:ENST00000456378.1:ENST00000496310.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	58	2	1.27738	1.83107	2.38476	0.0499863	0.0110593	0.17488	0.0873897
chr4	126641482	126641582	2237124	0	-	0.42	(0.408,0.44]	chr4	219023	1760	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	9	80	2	1.43388	1.831035	2.22819	0.0509486	0.00373083	0.157123	0.0561984
chr2	15529443	15529543	1072843	0	-	0.39	(0.378,0.408]	chr2	114441	177	INTRON	INTRON	NBAS	ENSG00000151779.13	ENST00000281513.10	protein_coding	protein_coding	protein_coding	protein_coding	12	105	2	1.7749	1.83103	1.88716	0.017192	0.00625757	0.104099	0.0720609
chr11	63700454	63700554	4800103	0	+	0.57	(0.515,0.57]	chr11	444936	183	INTRON	INTRON	RTN3	ENSG00000133318.14	ENST00000341307.6:ENST00000356000.7:ENST00000542238.5:ENST00000538995.1:ENST00000339997.8:ENST00000540798.5:ENST00000537981.5:ENST00000377819.10:ENST00000536011.5:ENST00000543123.1:ENST00000543552.5:ENST00000545432.5:ENST00000338850.5:ENST00000354497.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	47	2	1.32091	1.83089	2.34087	0.0469761	0.0433059	0.162255	0.151917
chr6	110895095	110895194	2939158	0	+	0.252525	[0,0.28]	chr6	276798	12	UTR3	UTR3:EXON_MRNA	AMD1	ENSG00000123505.19	ENST00000451850.6:ENST00000675380.1:ENST00000368882.8:ENST00000672937.2:ENST00000368885.8:ENST00000368876.2:ENST00000612642.4:ENST00000619590.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	159	2	1.74912	1.8308849999999999	1.91265	0.0166219	0.0112687	0.102621	0.0944526
chr13	60158886	60158986	5604325	0	-	0.33	(0.32,0.35]	chr13	535547	255	INTRON	INTRON	DIAPH3	ENSG00000139734.19	ENST00000400324.9:ENST00000377908.6:ENST00000400319.5:ENST00000400320.5:ENST00000267215.8	protein_coding	protein_coding	protein_coding	protein_coding	4	44	2	1.77704	1.83086	1.88468	0.0719969	0.0515071	0.187322	0.176696
chr2	169638717	169638817	907035	0	+	0.33	(0.32,0.35]	chr2	100086	13	UTR3	UTR3:EXON_MRNA	PPIG	ENSG00000138398.17	ENST00000678088.1:ENST00000677392.1:ENST00000676508.1:ENST00000260970.8:ENST00000678695.1:ENST00000677750.1:ENST00000678721.1:ENST00000676756.1:ENST00000679107.1:ENST00000678499.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	44	2	1.77704	1.83086	1.88468	0.0719969	0.0515071	0.187322	0.176696
chrX	24057954	24058054	7630765	0	+	0.33	(0.32,0.35]	chrX	781448	2	SS5_PROX	SS5_PROX:INTRON	EIF2S3	ENSG00000130741.11	ENST00000487075.1:ENST00000253039.9:ENST00000423068.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	44	2	1.77704	1.83086	1.88468	0.0719969	0.0515071	0.187322	0.176696
chr8	42277184	42277283	3742998	0	+	0.494949	(0.476,0.515]	chr8	348064	46	INTRON	INTRON	IKBKB	ENSG00000104365.16	ENST00000520810.6:ENST00000629753.2:ENST00000517890.5:ENST00000520835.7:ENST00000523105.5:ENST00000519735.5:ENST00000519733.5:ENST00000518679.5:ENST00000517917.5:ENST00000342222.6:ENST00000520201.5:ENST00000518647.5:ENST00000517388.5:ENST00000521661.5:ENST00000520655.5:ENST00000517812.5:ENST00000522147.4:ENST00000523517.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	80	2	1.57103	1.830845	2.09066	0.0307896	0.00772252	0.143385	0.0756858
chr8	93733106	93733205	3992314	0	-	0.333333	(0.32,0.35]	chr8	365419	51	UTR3	UTR3:EXON_MRNA:INTRON	RBM12B	ENSG00000183808.12	ENST00000399300.7:ENST00000520560.6:ENST00000518597.2:ENST00000517700.6:ENST00000519109.6:ENST00000520961.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	15	130	2	1.06586	1.8308399999999998	2.59582	0.0706567	0.00178944	0.184528	0.0392749
chr1	11797189	11797286	378853	0	-	0.340206	(0.32,0.35]	chr1	44470	4	INTRON	INTRON	MTHFR	ENSG00000177000.13	ENST00000376590.9:ENST00000376592.6:ENST00000376583.7:ENST00000376585.6:ENST00000641747.1:ENST00000641805.1:ENST00000641446.1:ENST00000423400.7:ENST00000641407.1:ENST00000641759.1:ENST00000641721.1:ENST00000376486.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	14	143	2	1.54706	1.830785	2.11451	0.0217698	0.00267385	0.11491	0.0478106
chr1	223962673	223962773	643499	0	-	0.39	(0.378,0.408]	chr1	75993	4	SS3_PROX	SS3_PROX:INTRON	GTF2IP20	ENSG00000272645.4	ENST00000634905.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	24	219	2	1.80719	1.83072	1.85425	0.00328889	0.00233098	0.0510508	0.0442989
chr11	65430262	65430362	4805845	0	+	0.59	(0.57,1]	chr11	446554	76	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	59	260	2	1.33841	1.830645	2.32288	0.00524819	3.266e-6	0.0633615	0.00117581
chr11	119001312	119001412	4874006	0	+	0.3	(0.28,0.32]	chr11	455379	3	SS3_PROX	SS3_PROX:INTRON	CENATAC	ENSG00000186166.9	ENST00000334418.6:ENST00000524670.5:ENST00000526463.5:ENST00000532132.5:ENST00000580556.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	112	2	1.59601	1.8306200000000001	2.06523	0.0236042	0.0112084	0.12907	0.0880475
chr16	58629527	58629627	6496383	0	-	0.68	(0.57,1]	chr16	628652	4	SS5_PROX	SS5_PROX:INTRON	CNOT1	ENSG00000125107.19	ENST00000317147.10:ENST00000569240.5:ENST00000567188.5:ENST00000441024.6:ENST00000565605.5:ENST00000564557.1:ENST00000569916.1:ENST00000569020.5:ENST00000568158.1:ENST00000569263.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	24	2	1.74185	1.83061	1.91937	0.0468438	0.0401765	0.167716	0.143911
chr21	42870264	42870363	7467817	0	-	0.585859	(0.57,1]	chr21	760973	63	INTRON	INTRON	WDR4	ENSG00000160193.12	ENST00000330317.6:ENST00000476326.5:ENST00000398208.3:ENST00000492742.5:ENST00000479429.5:ENST00000463902.5:ENST00000470658.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	24	2	1.74185	1.83061	1.91937	0.0468438	0.0401765	0.167716	0.143911
chrX	74248323	74248423	7841159	0	-	0.36	(0.35,0.378]	chrX	799718	4	SS3_PROX	SS3_PROX:INTRON	FTX	ENSG00000230590.12	ENST00000603672.5:ENST00000430772.6:ENST00000602776.6:ENST00000638681.1:ENST00000652319.1:ENST00000661133.1:ENST00000652071.1:ENST00000602812.6:ENST00000651703.1:ENST00000653018.1:ENST00000658448.1:ENST00000662240.1:ENST00000652527.1:ENST00000651451.1:ENST00000657611.1:ENST00000660481.1:ENST00000659574.1:ENST00000661084.1:ENST00000662494.1:ENST00000670936.1:ENST00000602420.6:ENST00000658203.1:ENST00000638985.1:ENST00000691187.1:ENST00000603037.2:ENST00000687056.1:ENST00000654870.2:ENST00000652540.1:ENST00000652331.2:ENST00000652013.1:ENST00000669263.1:ENST00000657070.1:ENST00000665069.1:ENST00000651936.1:ENST00000652496.1:ENST00000653874.2:ENST00000661335.1:ENST00000664123.1:ENST00000658439.1:ENST00000666535.1:ENST00000652970.1:ENST00000423992.3:ENST00000665313.2:ENST00000651140.1:ENST00000660100.1:ENST00000693483.1:ENST00000656041.1:ENST00000657327.1:ENST00000664343.1:ENST00000656977.1:ENST00000671343.1:ENST00000659407.1:ENST00000671067.1:ENST00000660829.1:ENST00000671385.1	lncRNA	lncRNA	lncRNA	lncRNA	6	58	2	1.49028	1.8305350000000002	2.17079	0.0590834	0.0225978	0.168067	0.124921
chr12	122083165	122083265	5239906	0	+	0.41	(0.408,0.44]	chr12	497496	35	INTRON	INTRON	MLXIP	ENSG00000175727.14	ENST00000319080.12	protein_coding	protein_coding	protein_coding	protein_coding	6	56	2	1.69566	1.8305	1.96534	0.0453922	0.0216499	0.164236	0.11491
chr1	226183490	226183590	647026	0	-	0.36	(0.35,0.378]	chr1	76667	171	INTRON	INTRON	ACBD3	ENSG00000182827.9	ENST00000366812.6	protein_coding	protein_coding	protein_coding	protein_coding	7	63	2	1.51819	1.830415	2.14264	0.0372715	0.0274795	0.155878	0.123904
chr6	147327376	147327476	2989955	0	+	0.3	(0.28,0.32]	chr6	280095	1	SS5_PROX	SS5_PROX:INTRON	STXBP5	ENSG00000164506.15	ENST00000321680.11:ENST00000367481.7:ENST00000367480.7:ENST00000367475.6:ENST00000392291.2	protein_coding	protein_coding	protein_coding	protein_coding	9	104	2	1.7584	1.8304049999999998	1.90241	0.0218117	0.0157236	0.11491	0.109464
chr5	28968570	28968670	2331438	0	+	0.49	(0.476,0.515]	chr5	225139	414	INTRON	INTRON	LINC02109	ENSG00000259786.7	ENST00000658190.1	lncRNA	lncRNA	lncRNA	lncRNA	5	46	2	1.7425	1.8303349999999998	1.91817	0.0459211	0.0417334	0.164984	0.147007
chr18	26016634	26016729	6958969	0	-	0.557895	(0.515,0.57]	chr18	688400	5	UTR3	UTR3:EXON_MRNA	SS18	ENSG00000141380.14	ENST00000415083.7	protein_coding	protein_coding	protein_coding	protein_coding	8	59	2	1.54678	1.83031	2.11384	0.0324987	0.0118599	0.145164	0.0899583
chr22	19908396	19908495	7555980	0	-	0.30303	(0.28,0.32]	chr22	772518	90	INTRON	INTRON	TXNRD2	ENSG00000184470.21	ENST00000400518.5:ENST00000542719.6:ENST00000494454.5:ENST00000474308.5:ENST00000400525.6:ENST00000400521.7:ENST00000400519.6:ENST00000635155.1:ENST00000491939.6:ENST00000334363.14:ENST00000475995.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	89	2	1.59898	1.830275	2.06157	0.030453	0.0189458	0.143385	0.108861
chr2	65429963	65430063	1144171	0	-	0.55	(0.515,0.57]	chr2	122242	524	INTRON	INTRON	SPRED2	ENSG00000198369.10	ENST00000356388.9:ENST00000440972.1	protein_coding	protein_coding	protein_coding	protein_coding	7	54	2	1.77795	1.83027	1.88259	0.0251849	0.0222234	0.133519	0.116128
chr18	36133716	36133816	6891453	0	+	0.3	(0.28,0.32]	chr18	682957	4	SS5_PROX	SS5_PROX:INTRON	ELP2	ENSG00000134759.14	ENST00000543127.5:ENST00000544267.5:ENST00000351393.10:ENST00000541190.5:ENST00000545632.5:ENST00000442325.6:ENST00000358232.11:ENST00000423854.6:ENST00000539560.5:ENST00000535488.5:ENST00000540135.5:ENST00000542430.5:ENST00000350494.10:ENST00000542824.5:ENST00000540799.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	105	2	1.56907	1.83026	2.09145	0.0208069	0.0172565	0.122348	0.104099
chr2	108745914	108746012	847682	0	+	0.5	(0.476,0.515]	chr2	94821	49	INTRON	INTRON	RANBP2	ENSG00000153201.16	ENST00000283195.11	protein_coding	protein_coding	protein_coding	protein_coding	14	122	2	1.62505	1.83026	2.03547	0.0210589	0.00174696	0.112542	0.0386026
chr10	912700	912799	4542397	0	-	0.434343	(0.408,0.44]	chr10	419304	93	INTRON	INTRON	LARP4B	ENSG00000107929.16	ENST00000316157.8:ENST00000690516.1:ENST00000476529.5:ENST00000406525.6:ENST00000481118.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	12	101	2	1.33432	1.830255	2.32619	0.0399351	0.00239266	0.143164	0.0450826
chr11	33706468	33706567	4941028	0	-	0.313131	(0.28,0.32]	chr11	462894	36	UTR3	UTR3:EXON_MRNA	CD59	ENSG00000085063.17	ENST00000642928.2:ENST00000651785.1:ENST00000652678.1	protein_coding	protein_coding	protein_coding	protein_coding	13	144	2	1.4847	1.830215	2.17573	0.0292243	0.00339266	0.128055	0.0536193
chr2	112648920	112649018	852092	0	+	0.367347	(0.35,0.378]	chr2	95574	8	INTRON	INTRON	SLC20A1	ENSG00000144136.11	ENST00000272542.8:ENST00000423633.5:ENST00000498224.5:ENST00000433924.5:ENST00000456264.5:ENST00000413135.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	16	148	2	1.58708	1.830175	2.07327	0.0102503	0.00411159	0.089002	0.0564928
chr12	124779785	124779884	5445724	0	-	0.646465	(0.57,1]	chr12	521214	8	INTRON	INTRON	SCARB1	ENSG00000073060.17	ENST00000339570.9:ENST00000261693.11:ENST00000679605.1:ENST00000681686.1:ENST00000680926.1:ENST00000680556.1:ENST00000680982.1:ENST00000680596.1:ENST00000681555.1:ENST00000681788.1:ENST00000415380.6:ENST00000681117.1:ENST00000681499.1:ENST00000545305.1:ENST00000538291.5:ENST00000546215.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	17	75	2	1.57422	1.83015	2.08608	0.0106389	9.52214e-4	0.0861859	0.0283391
chr8	23530006	23530104	3715107	0	+	0.571429	(0.57,1]	chr8	345213	4	INTRON	INTRON	SLC25A37	ENSG00000147454.14	ENST00000519973.6:ENST00000290075.10:ENST00000417331.6:ENST00000518881.5:ENST00000519192.1:ENST00000520654.1:ENST00000523930.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	14	53	2	1.28639	1.830025	2.37366	0.0273008	0.00373392	0.136494	0.0535844
chr16	210371	210471	6425997	0	-	0.45	(0.44,0.476]	chr16	617437	7	INTRON	INTRON	LUC7L	ENSG00000007392.17	ENST00000337351.8:ENST00000426094.5:ENST00000397783.5:ENST00000629543.2:ENST00000490762.5:ENST00000293872.13:ENST00000419516.5:ENST00000397780.5:ENST00000418978.5:ENST00000430864.5:ENST00000443357.5:ENST00000494366.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	45	2	1.69402	1.8300200000000002	1.96602	0.0456129	0.0426807	0.164236	0.148082
chr2	58215481	58215579	1126491	0	-	0.397959	(0.378,0.408]	chr2	120938	14	INTRON	INTRON	FANCL	ENSG00000115392.13	ENST00000696400.1:ENST00000403295.8:ENST00000696492.1:ENST00000427708.7:ENST00000696314.1:ENST00000696315.1:ENST00000696454.1:ENST00000696508.1:ENST00000696548.1:ENST00000696542.1:ENST00000696319.1:ENST00000403676.6:ENST00000696433.1:ENST00000696434.1:ENST00000696499.1:ENST00000696564.1:ENST00000402135.8:ENST00000696546.1:ENST00000233741.9:ENST00000696316.1:ENST00000696378.1:ENST00000696435.1:ENST00000696493.1:ENST00000696543.1:ENST00000696544.1:ENST00000696545.1:ENST00000696565.1:ENST00000696620.1:ENST00000696621.1:ENST00000696635.1:ENST00000696364.1:ENST00000696634.1:ENST00000696317.1:ENST00000696622.1:ENST00000696467.1:ENST00000696547.1:ENST00000449070.6:ENST00000696305.1:ENST00000417361.2:ENST00000696338.1:ENST00000696361.1:ENST00000696318.1:ENST00000696371.1:ENST00000696409.1:ENST00000696410.1:ENST00000696455.1:ENST00000696468.1:ENST00000696527.1:ENST00000696567.1:ENST00000696324.1:ENST00000696566.1:ENST00000696623.1:ENST00000446381.6:ENST00000696469.1:ENST00000696624.1:ENST00000696411.1:ENST00000470506.2:ENST00000696358.1:ENST00000696373.1:ENST00000696394.1:ENST00000696320.1:ENST00000696395.1:ENST00000696341.1:ENST00000696340.1:ENST00000696374.1:ENST00000696396.1:ENST00000696342.1:ENST00000696325.1:ENST00000696399.1:ENST00000696398.1:ENST00000696306.1:ENST00000696397.1:ENST00000696360.1:ENST00000696344.1:ENST00000696343.1:ENST00000696362.1:ENST00000696528.1:ENST00000696326.1:ENST00000696625.1:ENST00000696510.1:ENST00000696438.1:ENST00000696496.1:ENST00000696509.1:ENST00000696569.1:ENST00000696457.1:ENST00000696458.1:ENST00000696473.1:ENST00000696495.1:ENST00000696415.1:ENST00000696472.1:ENST00000696459.1:ENST00000696416.1:ENST00000696530.1:ENST00000696460.1:ENST00000696570.1:ENST00000696531.1:ENST00000696307.1:ENST00000696345.1:ENST00000696377.1:ENST00000696417.1:ENST00000696594.1:ENST00000696595.1:ENST00000696379.1:ENST00000696346.1:ENST00000696380.1:ENST00000696347.1:ENST00000696461.1:ENST00000696596.1:ENST00000696549.1:ENST00000696597.1:ENST00000696550.1:ENST00000696598.1:ENST00000696321.1:ENST00000696476.1:ENST00000696477.1:ENST00000696511.1:ENST00000481670.3:ENST00000696403.1:ENST00000696551.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	57	2	1.82258	1.82999	1.8374	0.0341279	0.0299228	0.142135	0.135102
chr19	5706559	5706659	7124569	0	-	0.52	(0.515,0.57]	chr19	717132	1	SS5_PROX	SS5_PROX:INTRON	LONP1	ENSG00000196365.12	ENST00000360614.8:ENST00000587552.5:ENST00000540670.6:ENST00000593119.5:ENST00000585374.5:ENST00000590558.5:ENST00000590729.5:ENST00000590206.1:ENST00000588589.5:ENST00000587365.1:ENST00000591321.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	53	2	1.79385	1.8299750000000001	1.8661	0.0274846	0.0201222	0.123904	0.121243
chr22	38500629	38500729	7588036	0	-	0.5	(0.476,0.515]	chr22	776766	1	SS5_PROX	SS5_PROX:INTRON	DDX17	ENSG00000100201.23	ENST00000403230.3:ENST00000396821.8:ENST00000216019.11:ENST00000432525.5:ENST00000467279.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	54	2	1.69138	1.829855	1.96833	0.0481165	0.0195007	0.153019	0.119967
chr11	130299689	130299789	5053714	0	-	0.36	(0.35,0.378]	chr11	476969	374	INTRON	INTRON	ZBTB44	ENSG00000196323.14	ENST00000357899.9:ENST00000527478.6:ENST00000445008.6:ENST00000525842.5:ENST00000397753.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	41	2	1.75561	1.8298299999999998	1.90405	0.0739399	0.0482651	0.190914	0.171852
chr7	128538828	128538928	3407432	0	+	0.45	(0.44,0.476]	chr7	318333	47	INTRON	INTRON	ENSG00000280828	ENSG00000280828.1	ENST00000479267.2	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	11	97	2	1.34977	1.829795	2.30982	0.0522828	0.00140739	0.160182	0.0344267
chr13	95190240	95190340	5638755	0	-	0.56	(0.515,0.57]	chr13	537121	13	INTRON	INTRON	ABCC4	ENSG00000125257.16	ENST00000645237.2:ENST00000643051.1:ENST00000643842.1:ENST00000646439.1:ENST00000643816.1:ENST00000536256.3:ENST00000643556.1:ENST00000629385.1:ENST00000642524.1:ENST00000645532.1:ENST00000644471.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	49	2	1.38719	1.829785	2.27238	0.0540435	0.0161808	0.181713	0.101453
chr1	246132590	246132690	676958	0	-	0.3	(0.28,0.32]	chr1	79721	363	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000391836.3:ENST00000453676.5:ENST00000462422.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	116	2	1.72809	1.8297599999999998	1.93143	0.0197186	0.0121651	0.120131	0.0910127
chr11	65967921	65968021	4807480	0	+	0.42	(0.408,0.44]	chr11	447175	1	SS5_PROX	SS5_PROX:INTRON	SART1	ENSG00000175467.15	ENST00000312397.10	protein_coding	protein_coding	protein_coding	protein_coding	6	54	2	1.58026	1.829725	2.07919	0.0444624	0.0291499	0.149888	0.14147
chr5	56840121	56840221	2357290	0	+	0.44	(0.408,0.44]	chr5	227407	237	INTRON	INTRON	MAP3K1	ENSG00000095015.6	ENST00000399503.4	protein_coding	protein_coding	protein_coding	protein_coding	6	54	2	1.58026	1.829725	2.07919	0.0444624	0.0291499	0.149888	0.14147
chr1	93181791	93181890	163180	0	+	0.484848	(0.476,0.515]	chr1	17644	20	UTR5	UTR5:EXON_MRNA:INTRON	CCDC18	ENSG00000122483.18	ENST00000343253.11:ENST00000528942.1:ENST00000401026.7:ENST00000690592.1:ENST00000448243.6:ENST00000370276.6:ENST00000690025.1:ENST00000479653.6:ENST00000481180.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	45	2	1.52615	1.8295949999999999	2.13304	0.0739267	0.024866	0.190914	0.132101
chr2	108732762	108732861	847547	0	+	0.292929	(0.28,0.32]	chr2	94805	9	INTRON	INTRON	RANBP2	ENSG00000153201.16	ENST00000283195.11:ENST00000425282.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	66	2	1.56118	1.8295599999999999	2.09794	0.0467152	0.0340483	0.1676	0.134863
chr13	25305132	25305231	5457199	0	+	0.444444	(0.44,0.476]	chr13	522871	16	INTRON	INTRON	NUP58	ENSG00000139496.17	ENST00000481980.2:ENST00000490231.6:ENST00000695571.1:ENST00000477876.2:ENST00000695572.1:ENST00000463407.6:ENST00000695573.1:ENST00000381736.8:ENST00000695583.1:ENST00000465068.5:ENST00000460326.5:ENST00000480187.5:ENST00000466694.6:ENST00000381718.8:ENST00000695575.1:ENST00000695574.1:ENST00000495460.2:ENST00000381747.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	13	113	2	1.75865	1.8295400000000002	1.90043	0.0130473	0.00449572	0.093385	0.0612817
chr22	20096792	20096892	7478404	0	+	0.35	(0.32,0.35]	chr22	762741	16	INTRON	INTRON	DGCR8	ENSG00000128191.16	ENST00000383024.6:ENST00000351989.8:ENST00000495826.5:ENST00000407755.1:ENST00000498171.5:ENST00000491892.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	53	2	1.61669	1.82953	2.04237	0.0578816	0.0375542	0.188651	0.140222
chr2	61534615	61534711	1131196	0	-	0.447917	(0.44,0.476]	chr2	121645	3	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	XPO1	ENSG00000082898.19	ENST00000676553.1:ENST00000677556.1:ENST00000677814.1:ENST00000676771.1:ENST00000677803.1:ENST00000677239.1:ENST00000678790.1:ENST00000677928.1:ENST00000678182.1:ENST00000677150.1:ENST00000678172.1:ENST00000678360.1:ENST00000678081.1:ENST00000676889.1:ENST00000676783.1:ENST00000679035.1:ENST00000677422.1:ENST00000677417.1:ENST00000677813.1:ENST00000676999.1:ENST00000676667.1:ENST00000401558.7:ENST00000428210.5:ENST00000677290.1:ENST00000677850.1:ENST00000451765.6:ENST00000676789.1:ENST00000678741.1:ENST00000404992.6:ENST00000406957.5:ENST00000443240.5:ENST00000420673.6:ENST00000481214.1:ENST00000449444.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	46	386	2	1.77034	1.829455	1.88857	0.00112638	8.3225e-4	0.0307184	0.0263691
chr4	55422223	55422322	1960862	0	+	0.414141	(0.408,0.44]	chr4	196577	37	INTRON	INTRON	TMEM165	ENSG00000134851.13	ENST00000381334.10:ENST00000506198.5:ENST00000508404.5:ENST00000514904.5:ENST00000508561.5:ENST00000608091.1:ENST00000509575.1:ENST00000506103.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	53	2	1.81572	1.8293650000000001	1.84301	0.0626779	0.0174311	0.175915	0.112689
chr11	85982981	85983077	5013959	0	-	0.364583	(0.35,0.378]	chr11	472935	6	INTRON	INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000530692.5:ENST00000630913.2:ENST00000529760.5:ENST00000528398.5:ENST00000532603.5:ENST00000356360.9:ENST00000529016.5:ENST00000526961.5:ENST00000530542.1	protein_coding	protein_coding	protein_coding	protein_coding	12	109	2	1.58	1.8293	2.0786	0.0148489	0.00903914	0.106937	0.0805265
chrX	101049750	101049850	7855261	0	-	0.45	(0.44,0.476]	chrX	800835	57	INTRON	INTRON	TRMT2B:TRMT2B-AS1	ENSG00000188917.15:ENSG00000225839.2	ENST00000545398.5:ENST00000372936.4:ENST00000372939.5:ENST00000372935.5:ENST00000478422.1:ENST00000443801.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA:processed_transcript	11	93	2	1.62573	1.829295	2.03286	0.0146931	0.00977911	0.106558	0.0835427
chr9	5066733	5066789	4096647	0	+	0.339286	(0.32,0.35]	chr9	373282	2	CDS	CDS:EXON_MRNA	JAK2	ENSG00000096968.14	ENST00000636127.1:ENST00000381652.4	protein_coding	protein_coding	protein_coding	protein_coding	6	62	2	1.77704	1.829225	1.88141	0.0719969	0.0161424	0.187322	0.109464
chr12	110299133	110299233	5226281	0	+	0.52	(0.515,0.57]	chr12	495250	20	INTRON	INTRON	ATP2A2	ENSG00000174437.18	ENST00000308664.10:ENST00000539276.7:ENST00000377685.9:ENST00000548169.2:ENST00000550248.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	11	82	2	1.47127	1.82912	2.18697	0.0333563	0.00232379	0.134145	0.0442989
chr16	16505417	16505516	6310916	0	+	0.40404	(0.378,0.408]	chr16	604098	54	INTRON	INTRON	ENSG00000260126	ENSG00000260126.2	ENST00000567465.2	lncRNA	lncRNA	lncRNA	lncRNA	17	149	2	1.44013	1.82898	2.21783	0.0196704	0.00141252	0.109608	0.0345383
chr3	172774918	172775017	1563470	0	+	0.343434	(0.32,0.35]	chr3	161783	5	INTRON	INTRON	ECT2	ENSG00000114346.14	ENST00000232458.9:ENST00000540509.5:ENST00000392692.8:ENST00000417960.5:ENST00000441497.6:ENST00000444250.1	protein_coding	protein_coding	protein_coding	protein_coding	9	83	2	1.61555	1.82896	2.04237	0.0375542	0.0165587	0.140222	0.110511
chr1	67423999	67424099	477565	0	-	0.34	(0.32,0.35]	chr1	57478	4	SS5_PROX	SS5_PROX:INTRON	SERBP1	ENSG00000142864.15	ENST00000370994.8:ENST00000361219.11:ENST00000370995.6:ENST00000370990.5:ENST00000493607.1:ENST00000484880.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	14	132	2	1.1701	1.8288349999999998	2.48757	0.0518461	0.00192722	0.176696	0.0397539
chr14	31001361	31001461	5857623	0	-	0.45	(0.44,0.476]	chr14	556508	370	INTRON	INTRON	STRN3	ENSG00000196792.12	ENST00000355683.9:ENST00000357479.10:ENST00000555358.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	63	2	1.54868	1.8288	2.10892	0.0457575	0.0132897	0.164677	0.0944742
chr17	30895582	30895677	6591087	0	+	0.505263	(0.476,0.515]	chr17	641038	8	UTR3	UTR3:EXON_MRNA	ATAD5	ENSG00000176208.9	ENST00000321990.5	protein_coding	protein_coding	protein_coding	protein_coding	16	138	2	1.61137	1.828635	2.0459	0.010372	0.00285079	0.0898171	0.0474835
chr7	99575760	99575859	3362871	0	+	0.313131	(0.28,0.32]	chr7	314159	23	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ZNF655	ENSG00000197343.11	ENST00000252713.9:ENST00000425063.5:ENST00000424881.5:ENST00000394163.2:ENST00000419215.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	80	2	1.51187	1.828605	2.14534	0.0598267	0.0117054	0.169278	0.0962115
chr20	35736012	35736112	7336492	0	-	0.47	(0.44,0.476]	chr20	747488	1	SS5_PROX	SS5_PROX:INTRON	RBM39	ENSG00000131051.24	ENST00000253363.11:ENST00000639702.1:ENST00000656873.1:ENST00000463004.5:ENST00000361162.10:ENST00000461283.5:ENST00000403542.6:ENST00000338163.10:ENST00000528062.7:ENST00000429968.5:ENST00000444878.5:ENST00000665058.1:ENST00000374038.7:ENST00000412738.5:ENST00000434927.5:ENST00000425184.5:ENST00000481037.5:ENST00000455343.5:ENST00000416108.5:ENST00000426951.5:ENST00000477334.1:ENST00000442447.5:ENST00000449489.5:ENST00000433027.5:ENST00000487604.1:ENST00000453310.5:ENST00000498280.1:ENST00000416529.5:ENST00000397370.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	18	144	2	1.67361	1.828585	1.98356	0.00757232	0.00422612	0.0749063	0.0595466
chr17	50732560	50732660	6627098	0	+	0.41	(0.408,0.44]	chr17	647183	82	INTRON	INTRON	LUC7L3	ENSG00000108848.16	ENST00000625349.2:ENST00000508045.5:ENST00000508218.5:ENST00000509335.5:ENST00000506686.5:ENST00000393227.6:ENST00000504563.6:ENST00000505658.6:ENST00000240304.5:ENST00000508482.5:ENST00000505619.5:ENST00000510984.5:ENST00000507200.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	100	2	1.55898	1.82858	2.09818	0.0154752	0.00772939	0.108994	0.0757122
chr12	116237272	116237367	5425146	0	-	0.410526	(0.408,0.44]	chr12	518286	4	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MED13L	ENSG00000123066.9	ENST00000281928.9:ENST00000650226.1:ENST00000548743.2:ENST00000647567.1:ENST00000551197.2:ENST00000649627.1:ENST00000648067.1:ENST00000650496.1:ENST00000648593.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	52	2	1.6546400000000001	1.82846	2.00228	0.0389732	0.0329965	0.145298	0.143072
chr1	179217246	179217346	592955	0	-	0.56	(0.515,0.57]	chr1	71074	743	INTRON	INTRON	ABL2	ENSG00000143322.21	ENST00000502732.6:ENST00000367623.8:ENST00000507173.5:ENST00000511413.5:ENST00000668691.1:ENST00000392043.4:ENST00000660584.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	32	2	1.7074	1.828425	1.94945	0.0779432	0.0414068	0.196685	0.161557
chr13	28204041	28204141	5461488	0	+	0.52	(0.515,0.57]	chr13	523261	63	INTRON	INTRON	PAN3	ENSG00000152520.14	ENST00000503791.5:ENST00000380958.8:ENST00000399613.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	32	2	1.7074	1.828425	1.94945	0.0779432	0.0414068	0.196685	0.161557
chr18	31911322	31911419	6961077	0	-	0.536082	(0.515,0.57]	chr18	688762	12	INTRON	INTRON	TRAPPC8	ENSG00000153339.15	ENST00000283351.10:ENST00000580104.5:ENST00000582539.5:ENST00000582513.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	32	2	1.7074	1.828425	1.94945	0.0779432	0.0414068	0.196685	0.161557
chr18	41966329	41966429	6897561	0	+	0.55	(0.515,0.57]	chr18	683374	33	INTRON	INTRON	PIK3C3	ENSG00000078142.14	ENST00000262039.9:ENST00000398870.7:ENST00000586545.5:ENST00000585528.5:ENST00000591011.1:ENST00000589550.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	32	2	1.7074	1.828425	1.94945	0.0779432	0.0414068	0.196685	0.161557
chr8	67210383	67210483	3962450	0	-	0.53	(0.515,0.57]	chr8	363563	33	INTRON	INTRON	ARFGEF1	ENSG00000066777.9	ENST00000520381.5:ENST00000518789.5:ENST00000262215.8:ENST00000518230.5	protein_coding	protein_coding	protein_coding	protein_coding	4	32	2	1.7074	1.828425	1.94945	0.0779432	0.0414068	0.196685	0.161557
chr16	48381320	48381420	6484021	0	-	0.42	(0.408,0.44]	chr16	627085	156	INTRON	INTRON	SIAH1	ENSG00000196470.12	ENST00000568007.5:ENST00000394725.3:ENST00000563745.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	77	2	1.29431	1.8282950000000002	2.36228	0.0580322	0.00528443	0.188651	0.0635846
chr3	177185781	177185881	1872332	0	-	0.43	(0.408,0.44]	chr3	187438	145	INTRON	INTRON	TBL1XR1	ENSG00000177565.18	ENST00000457928.7:ENST00000430069.5:ENST00000673974.1:ENST00000352800.10:ENST00000422442.6:ENST00000428970.5:ENST00000424913.5:ENST00000437738.5:ENST00000431421.5:ENST00000635794.1:ENST00000630796.2:ENST00000450267.5:ENST00000630833.2:ENST00000431674.5:ENST00000422066.5:ENST00000443315.5:ENST00000627825.2:ENST00000427349.5:ENST00000413084.5:ENST00000637137.1:ENST00000491623.2:ENST00000637544.1:ENST00000636187.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	23	176	2	1.34403	1.828295	2.31256	0.0139883	0.00120064	0.102501	0.0315922
chr16	46696493	46696585	6342787	0	+	0.402174	(0.378,0.408]	chr16	608756	4	SS5_PROX	SS5_PROX:INTRON	ORC6	ENSG00000091651.9	ENST00000563599.5:ENST00000219097.7:ENST00000568364.6:ENST00000566860.1:ENST00000575571.5:ENST00000567000.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	39	2	1.76032	1.828265	1.89621	0.0721577	0.0488044	0.187433	0.173377
chr2	32399966	32400066	731211	0	+	0.5	(0.476,0.515]	chr2	84304	40	INTRON	INTRON	BIRC6	ENSG00000115760.15	ENST00000421745.7:ENST00000648282.1:ENST00000466527.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	57	2	1.38864	1.828265	2.26789	0.0547008	0.0176567	0.182743	0.105233
chr6	20579554	20579654	2828836	0	+	0.4	(0.378,0.408]	chr6	265649	200	INTRON	INTRON	CDKAL1	ENSG00000145996.11	ENST00000274695.8:ENST00000378610.1	protein_coding	protein_coding	protein_coding	protein_coding	4	39	2	1.76032	1.828265	1.89621	0.0721577	0.0488044	0.187433	0.173377
chr8	129536153	129536253	4060644	0	-	0.36	(0.35,0.378]	chr8	369648	256	INTRON	INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1:ENST00000676273.1:ENST00000667643.1:ENST00000668791.1:ENST00000663716.1:ENST00000663572.1:ENST00000676148.1:ENST00000667962.1:ENST00000674877.1:ENST00000675316.1:ENST00000674656.1:ENST00000446592.7:ENST00000667341.1:ENST00000675186.1:ENST00000652971.1:ENST00000661447.1:ENST00000674863.1:ENST00000675498.1:ENST00000675527.1:ENST00000676108.1:ENST00000657647.1:ENST00000675589.1:ENST00000675913.1:ENST00000675109.1:ENST00000671632.1:ENST00000671311.1:ENST00000676099.1:ENST00000660652.1:ENST00000675522.1:ENST00000675183.1:ENST00000658861.1:ENST00000663991.1:ENST00000675044.1:ENST00000675435.1:ENST00000674639.1:ENST00000676069.1:ENST00000675532.1:ENST00000674762.1:ENST00000523151.6:ENST00000675948.1:ENST00000665364.1:ENST00000657251.1:ENST00000675166.1:ENST00000674883.1:ENST00000675867.1:ENST00000674580.1:ENST00000675393.1:ENST00000520048.1:ENST00000674906.1:ENST00000676030.1:ENST00000670588.1:ENST00000675072.1:ENST00000664936.1:ENST00000652914.1:ENST00000657069.1	lncRNA	lncRNA	lncRNA	lncRNA	9	83	2	1.22527	1.828175	2.43108	0.0773701	0.00345501	0.196285	0.0539802
chr22	21798811	21798911	7560695	0	-	0.54	(0.515,0.57]	chr22	773371	4	SS5_PROX	SS5_PROX:INTRON	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	22	160	2	1.78732	1.828135	1.86895	0.00397896	0.00150042	0.0549214	0.0358173
chr3	172772116	172772214	1563441	0	+	0.540816	(0.515,0.57]	chr3	161777	26	INTRON	INTRON	ECT2	ENSG00000114346.14	ENST00000232458.9:ENST00000540509.5:ENST00000392692.8:ENST00000417960.5:ENST00000441497.6:ENST00000444250.1	protein_coding	protein_coding	protein_coding	protein_coding	11	70	2	1.50569	1.8281	2.15051	0.0238113	0.0151197	0.118889	0.108524
chr20	49702779	49702879	7353517	0	-	0.48	(0.476,0.515]	chr20	749846	457	INTRON	INTRON	B4GALT5	ENSG00000158470.5	ENST00000371711.4	protein_coding	protein_coding	protein_coding	protein_coding	7	62	2	1.7425	1.82809	1.91368	0.0417334	0.0135123	0.147007	0.101363
chr7	148876236	148876335	3670683	0	-	0.424242	(0.408,0.44]	chr7	340632	50	INTRON	INTRON	EZH2	ENSG00000106462.12	ENST00000683292.1:ENST00000320356.7:ENST00000492143.5:ENST00000478654.5:ENST00000350995.6:ENST00000460911.5:ENST00000683744.1:ENST00000682317.1:ENST00000682263.1:ENST00000476773.5:ENST00000483967.5:ENST00000498186.5:ENST00000483012.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	20	173	2	1.44935	1.827905	2.20646	0.0183045	5.09013e-4	0.108282	0.020241
chr4	39712165	39712265	1953132	0	+	0.47	(0.44,0.476]	chr4	195630	134	INTRON	INTRON	UBE2K	ENSG00000078140.14	ENST00000510934.5:ENST00000261427.10:ENST00000438068.6:ENST00000513231.5:ENST00000503368.5:ENST00000445950.2:ENST00000510719.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	62	2	1.7965	1.8277700000000001	1.85904	0.029889	0.0205549	0.129138	0.122348
chr1	160253606	160253705	571522	0	-	0.393939	(0.378,0.408]	chr1	69176	92	INTRON	INTRON	DCAF8	ENSG00000132716.19	ENST00000326837.6:ENST00000368073.7:ENST00000368074.6:ENST00000461888.5:ENST00000475733.5:ENST00000610139.5:ENST00000447377.5:ENST00000495887.1:ENST00000440682.5:ENST00000407642.6:ENST00000419626.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	48	2	1.68393	1.82768	1.97143	0.0503034	0.0398704	0.161534	0.156383
chr2	113585015	113585113	854088	0	+	0.397959	(0.378,0.408]	chr2	95852	7	INTRON	INTRON	WASH2P	ENSG00000146556.15	ENST00000686495.1:ENST00000692602.1:ENST00000688542.1:ENST00000685302.1:ENST00000685435.1:ENST00000685518.1:ENST00000691953.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	5	48	2	1.68393	1.82768	1.97143	0.0503034	0.0398704	0.161534	0.156383
chr21	38103332	38103432	7463919	0	-	0.43	(0.408,0.44]	chr21	760303	36	INTRON	INTRON	DSCR4	ENSG00000184029.9	ENST00000398948.5:ENST00000328264.7:ENST00000482032.1	lncRNA	lncRNA	lncRNA	lncRNA	19	154	2	1.43048	1.827645	2.22481	0.0132039	0.00182717	0.0999551	0.0386611
chr17	64505645	64505745	6815878	0	-	0.66	(0.57,1]	chr17	673831	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	DDX5	ENSG00000108654.16	ENST00000225792.10:ENST00000678890.1:ENST00000676601.1:ENST00000676575.1:ENST00000676969.1:ENST00000678810.1:ENST00000585317.2:ENST00000678110.1:ENST00000580026.6:ENST00000676785.1:ENST00000585111.2:ENST00000577922.6:ENST00000450599.7:ENST00000678814.1:ENST00000677726.1:ENST00000579461.2:ENST00000540698.6:ENST00000581230.5:ENST00000581693.5:ENST00000582326.2:ENST00000578491.2:ENST00000578804.5:ENST00000578400.5:ENST00000581697.5:ENST00000581806.5:ENST00000585060.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	17	72	2	1.62835	1.82762	2.02689	0.00839052	0.00400073	0.0823837	0.0551303
chr14	73065593	73065691	5784150	0	+	0.520408	(0.515,0.57]	chr14	547814	1	INTRON	INTRON	RBM25	ENSG00000119707.14	ENST00000527432.5:ENST00000531500.5:ENST00000261973.12:ENST00000532683.5:ENST00000525321.5:ENST00000526754.5:ENST00000525161.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	49	2	1.44237	1.82755	2.21273	0.0456196	0.0196151	0.164236	0.109486
chr22	19402885	19402985	7554132	0	-	0.46	(0.44,0.476]	chr22	772292	44	INTRON	INTRON	HIRA:C22orf39	ENSG00000100084.14:ENSG00000242259.9	ENST00000263208.5:ENST00000340170.8:ENST00000509549.5:ENST00000464189.5:ENST00000452818.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	27	232	2	1.68379	1.827525	1.97126	0.00403971	0.00120589	0.055544	0.0320488
chr1	54383183	54383283	463529	0	-	0.51	(0.476,0.515]	chr1	55784	265	INTRON	INTRON	SSBP3	ENSG00000157216.16	ENST00000610401.5:ENST00000357475.9:ENST00000371319.8:ENST00000417664.7:ENST00000533946.6:ENST00000371320.8:ENST00000525990.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	55	2	1.68092	1.82747	1.97402	0.0474026	0.0206778	0.169265	0.110999
chr1	165651977	165652035	243580	0	+	0.448276	(0.44,0.476]	chr1	29105	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	MGST3	ENSG00000143198.13	ENST00000367888.8:ENST00000367889.8:ENST00000495447.5:ENST00000367885.5:ENST00000367884.6:ENST00000367883.3:ENST00000627653.1:ENST00000477450.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	45	2	1.81595	1.82747	1.83899	0.0589734	0.0317953	0.167915	0.14477
chr4	61950	62050	1905376	0	+	0.31	(0.28,0.32]	chr4	191003	14	INTRON	INTRON	ZNF595	ENSG00000272602.6	ENST00000608255.2:ENST00000609518.5:ENST00000509152.3:ENST00000610261.6	protein_coding	protein_coding	protein_coding	protein_coding	18	196	2	1.73988	1.827345	1.91481	0.00752468	0.0052865	0.074841	0.0656631
chr5	181240659	181240752	2783886	0	-	0.354839	(0.35,0.378]	chr5	262929	3	SS3_PROX	SS3_PROX:INTRON	RACK1	ENSG00000204628.12	ENST00000512805.6:ENST00000511473.5:ENST00000504325.5:ENST00000507756.5:ENST00000502905.5:ENST00000511566.5:ENST00000376817.8:ENST00000508682.5:ENST00000504128.5:ENST00000504726.1:ENST00000511900.5:ENST00000513060.5:ENST00000512968.5:ENST00000510199.5:ENST00000502844.5:ENST00000507000.5:ENST00000514183.5:ENST00000502548.5:ENST00000502890.5:ENST00000503494.5:ENST00000506312.3:ENST00000503081.1:ENST00000515417.5:ENST00000513027.3:ENST00000626067.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	90	2	1.77736	1.827345	1.87733	0.0225073	0.012522	0.124921	0.0925829
chr2	26795677	26795776	715850	0	+	0.474747	(0.44,0.476]	chr2	82684	12	INTRON	INTRON	CENPA	ENSG00000115163.15	ENST00000460030.1	protein_coding	processed_transcript	protein_coding	processed_transcript	5	45	2	1.62896	1.82727	2.02558	0.0546679	0.0363567	0.182674	0.138959
chr5	10428305	10428404	2318427	0	+	0.363636	(0.35,0.378]	chr5	224755	14	INTRON	INTRON	MARCHF6	ENSG00000145495.16	ENST00000274140.10:ENST00000449913.6:ENST00000511802.5:ENST00000503788.5:ENST00000510792.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	57	2	1.77736	1.8272650000000001	1.87717	0.0555068	0.0225073	0.165463	0.124921
chr11	70417623	70417718	4821815	0	+	0.494737	(0.476,0.515]	chr11	449634	1	INTRON	INTRON	CTTN	ENSG00000085733.16	ENST00000346329.7:ENST00000301843.13:ENST00000376561.7:ENST00000415461.2:ENST00000532334.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	15	127	2	1.41305	1.827245	2.24144	0.0259752	0.00122866	0.12182	0.0325799
chr2	213387597	213387697	1003665	0	+	0.55	(0.515,0.57]	chr2	107753	121	INTRON	INTRON	SPAG16	ENSG00000144451.20	ENST00000406979.6:ENST00000452556.5:ENST00000331683.10:ENST00000447990.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	59	2	1.49552	1.8270899999999999	2.15866	0.0385038	0.0100547	0.159277	0.0848452
chr5	141617298	141617398	2740172	0	-	0.45	(0.44,0.476]	chr5	258168	287	INTRON	INTRON	DIAPH1	ENSG00000131504.18	ENST00000647433.1:ENST00000389054.8:ENST00000518047.5:ENST00000523100.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	62	2	1.81283	1.8270849999999998	1.84134	0.0343005	0.0175428	0.135641	0.11319
chr19	10971779	10971878	7015665	0	+	0.545455	(0.515,0.57]	chr19	697168	61	INTRON	INTRON	SMARCA4	ENSG00000127616.20	ENST00000644737.1:ENST00000642726.1:ENST00000646484.1:ENST00000643549.1:ENST00000643296.1:ENST00000647230.1:ENST00000642628.1:ENST00000646510.1:ENST00000429416.8:ENST00000644760.1:ENST00000344626.10:ENST00000646693.2:ENST00000645460.1:ENST00000541122.6:ENST00000589677.5:ENST00000444061.8:ENST00000590574.6	protein_coding	protein_coding	protein_coding	protein_coding	12	88	2	1.46708	1.827025	2.18697	0.0272921	0.00232379	0.123904	0.0442989
chr4	165341550	165341650	2079777	0	+	0.34	(0.32,0.35]	chr4	205589	4	SS3_PROX	SS3_PROX:INTRON	MSMO1	ENSG00000052802.13	ENST00000261507.11:ENST00000393766.6	protein_coding	protein_coding	protein_coding	protein_coding	10	100	2	1.77409	1.826975	1.87986	0.0414296	0.00559781	0.146067	0.0678837
chr3	9999321	9999421	1362095	0	+	0.5	(0.476,0.515]	chr3	143402	51	INTRON	INTRON	EMC3-AS1	ENSG00000180385.9	ENST00000692142.1:ENST00000366264.6:ENST00000693066.1:ENST00000326237.3:ENST00000440568.1:ENST00000424904.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	9	77	2	1.5371	1.8269449999999998	2.11679	0.028567	0.0115627	0.126677	0.0962115
chr10	60782594	60782694	4435809	0	+	0.36	(0.35,0.378]	chr10	409170	20	INTRON	INTRON	CDK1	ENSG00000170312.17	ENST00000519078.6:ENST00000475504.6:ENST00000316629.8:ENST00000519760.1:ENST00000395284.8:ENST00000448257.6:ENST00000373809.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	76	2	1.81752	1.8269250000000001	1.83633	0.0335602	0.0130467	0.134145	0.0994973
chr12	69248940	69249039	5163591	0	+	0.555556	(0.515,0.57]	chr12	488988	89	INTRON	INTRON	CPSF6	ENSG00000111605.18	ENST00000435070.7:ENST00000550075.5:ENST00000650046.1:ENST00000456847.7:ENST00000266679.8:ENST00000550987.5:ENST00000551516.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	44	2	1.44089	1.82681	2.21273	0.0617046	0.0196151	0.193423	0.109486
chr12	54235801	54235901	5330446	0	-	0.37	(0.35,0.378]	chr12	508602	50	UTR3	UTR3:EXON_MRNA	CBX5	ENSG00000094916.16	ENST00000209875.9	protein_coding	protein_coding	protein_coding	protein_coding	11	102	2	1.57499	1.8267949999999997	2.0786	0.0185901	0.00903914	0.117264	0.0805265
chrX	41144573	41144626	7644663	0	+	0.339623	(0.32,0.35]	chrX	782282	2	CDS	CDS:EXON_MRNA	USP9X	ENSG00000124486.14	ENST00000324545.9:ENST00000378308.7	protein_coding	protein_coding	protein_coding	protein_coding	6	52	2	1.42176	1.82679	2.23182	0.068598	0.0511006	0.184298	0.176696
chr1	65281599	65281698	135809	0	+	0.454545	(0.44,0.476]	chr1	15346	163	INTRON	INTRON	DNAJC6	ENSG00000116675.16	ENST00000463018.5:ENST00000494710.6:ENST00000263441.11:ENST00000395325.7:ENST00000483402.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	71	2	1.64563	1.8267799999999998	2.00793	0.0363922	0.00937685	0.138959	0.0859966
chrX	41335693	41335790	7645659	0	+	0.298969	(0.28,0.32]	chrX	782485	6	EXON_MRNA	EXON_MRNA:SS3_PROX:SS5_PROX:INTRON	DDX3X	ENSG00000215301.11	ENST00000625837.2:ENST00000626301.2:ENST00000629785.2:ENST00000630255.2:ENST00000630370.2:ENST00000630858.2:ENST00000629496.3:ENST00000610559.5:ENST00000611546.2:ENST00000478993.5:ENST00000457138.7:ENST00000643821.1:ENST00000644876.2:ENST00000399959.7:ENST00000644074.1:ENST00000645338.1:ENST00000646196.1:ENST00000642793.1:ENST00000646940.1:ENST00000644307.1:ENST00000645561.1:ENST00000645080.1:ENST00000642597.1:ENST00000642722.1:ENST00000644109.1:ENST00000644958.1:ENST00000646122.1:ENST00000644513.1:ENST00000645589.1:ENST00000441189.4:ENST00000646822.1:ENST00000631641.2:ENST00000615742.4:ENST00000647219.1:ENST00000480592.6:ENST00000646223.1:ENST00000643963.1:ENST00000646319.1:ENST00000645783.1:ENST00000642624.1:ENST00000542215.5:ENST00000644073.1:ENST00000644677.1:ENST00000615313.5:ENST00000622373.1:ENST00000642322.1:ENST00000622198.5:ENST00000645120.1:ENST00000646107.1:ENST00000646627.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	48	2	1.81582	1.826765	1.83771	0.068122	0.0591725	0.189982	0.184298
chr3	168088250	168088350	1854863	0	-	0.43	(0.408,0.44]	chr3	186419	395	INTRON	INTRON	GOLIM4	ENSG00000173905.9	ENST00000470487.6:ENST00000309027.4	protein_coding	protein_coding	protein_coding	protein_coding	8	63	2	1.3378	1.8267250000000002	2.31565	0.050805	0.0154718	0.175989	0.100909
chr9	130788653	130788753	4214611	0	+	0.37	(0.35,0.378]	chr9	386427	738	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000393293.4	protein_coding	protein_coding	protein_coding	protein_coding	11	103	2	1.43646	1.82666	2.21686	0.0351612	0.00414535	0.137535	0.0589266
chr11	86067750	86067850	5014830	0	-	0.45	(0.44,0.476]	chr11	473022	358	INTRON	INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000630913.2:ENST00000528398.5:ENST00000356360.9:ENST00000534412.5:ENST00000531558.1:ENST00000531930.5:ENST00000532041.5:ENST00000525162.5:ENST00000528256.1:ENST00000528411.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	25	160	2	0.962522	1.8266559999999998	2.69079	0.0548759	5.45672e-4	0.183323	0.0215454
chrX	3864045	3864145	7747228	0	-	0.43	(0.408,0.44]	chrX	793119	4	SS3_PROX	SS3_PROX:INTRON	ENSG00000285756	ENSG00000285756.2	ENST00000648217.1:ENST00000650456.1:ENST00000657698.1:ENST00000661656.1:ENST00000661924.1:ENST00000669719.1:ENST00000655273.1:ENST00000456563.1:ENST00000650538.1	lncRNA	lncRNA	lncRNA	lncRNA	6	49	2	1.35739	1.826545	2.2957	0.063317	0.0516458	0.177047	0.176696
chr3	73006536	73006635	1452051	0	+	0.383838	(0.378,0.408]	chr3	152951	80	INTRON	INTRON	PPP4R2	ENSG00000163605.15	ENST00000482242.5:ENST00000356692.10:ENST00000470976.1:ENST00000488810.5:ENST00000495566.1:ENST00000476505.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	47	2	1.76032	1.826415	1.89251	0.0721577	0.0251428	0.187433	0.133404
chr3	196926606	196926705	1597037	0	+	0.464646	(0.44,0.476]	chr3	165431	27	INTRON	INTRON	SENP5	ENSG00000119231.11	ENST00000445299.6:ENST00000323460.10:ENST00000419026.5:ENST00000448068.5	protein_coding	protein_coding	protein_coding	protein_coding	14	111	2	1.21833	1.826415	2.4345	0.0417163	0.00185115	0.161736	0.0388609
chr21	46200552	46200652	7470580	0	-	0.31	(0.28,0.32]	chr21	761464	39	INTRON	INTRON	LSS	ENSG00000160285.15	ENST00000356396.8:ENST00000397728.8:ENST00000457828.6:ENST00000522411.5	protein_coding	protein_coding	protein_coding	protein_coding	24	266	2	1.81256	1.826175	1.83979	0.00529242	0.0029066	0.0636452	0.0494641
chr16	23958517	23958617	6324986	0	+	0.53	(0.515,0.57]	chr16	605701	648	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000498739.1	protein_coding	protein_coding	protein_coding	protein_coding	5	39	2	1.7074	1.826165	1.94493	0.0779432	0.0204583	0.196685	0.122204
chr19	28532202	28532301	7166417	0	-	0.252525	[0,0.28]	chr19	724189	640	INTRON	INTRON	ENSG00000283403:ENSG00000267243	ENSG00000283403.1:ENSG00000267243.6	ENST00000592347.5:ENST00000593065.5	lncRNA	lncRNA	lncRNA	lncRNA	26	334	2	1.47923	1.826105	2.17298	0.0218342	6.30651e-4	0.11491	0.0226622
chr3	10000619	10000718	1362108	0	+	0.383838	(0.378,0.408]	chr3	143402	64	INTRON	INTRON	EMC3-AS1	ENSG00000180385.9	ENST00000692142.1:ENST00000366264.6:ENST00000693066.1:ENST00000326237.3:ENST00000440568.1:ENST00000424904.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	5	47	2	1.59317	1.82607	2.05897	0.0603812	0.0339294	0.19151	0.134508
chr11	76030161	76030260	4834347	0	+	0.343434	(0.32,0.35]	chr11	451001	128	INTRON	INTRON	UVRAG	ENSG00000198382.9	ENST00000356136.8:ENST00000528420.5:ENST00000533454.5:ENST00000531818.5:ENST00000532130.1	protein_coding	protein_coding	protein_coding	protein_coding	9	93	2	1.74135	1.825985	1.91062	0.0298264	0.00946346	0.129138	0.0863138
chr15	50359237	50359337	6022083	0	+	0.3	(0.28,0.32]	chr15	573922	44	EXON_LNCRNA	EXON_LNCRNA:INTRON	GABPB1-AS1	ENSG00000244879.9	ENST00000668321.1:ENST00000499624.3:ENST00000648591.1:ENST00000558593.1	lncRNA	lncRNA	lncRNA	lncRNA	21	222	2	1.37051	1.8259649999999998	2.28142	0.0188122	0.0016446	0.117914	0.0369207
chr16	23841794	23841893	6323816	0	+	0.515152	(0.476,0.515]	chr16	605693	40	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000498058.1:ENST00000645517.1:ENST00000498739.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	19	162	2	1.57123	1.82592	2.08061	0.00902299	0.00182854	0.085138	0.0386771
chr6	73520519	73520617	3139452	0	-	0.744898	(0.57,1]	chr6	292540	6	UTR5	UTR5:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	EEF1A1	ENSG00000156508.19	ENST00000676547.1:ENST00000309268.11:ENST00000610520.5:ENST00000316292.13:ENST00000615060.5:ENST00000356303.7:ENST00000331523.7:ENST00000490569.6:ENST00000678515.1:ENST00000676710.1:ENST00000678702.1:ENST00000677236.1:ENST00000455918.2:ENST00000491404.2:ENST00000488500.2:ENST00000495333.6:ENST00000678703.1:ENST00000677062.1:ENST00000678143.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	23	102	2	1.68382	1.825865	1.96791	0.00419054	6.38618e-4	0.0591344	0.0231685
chr19	1208300	1208399	6994217	0	+	0.525253	(0.515,0.57]	chr19	692890	7	INTRON	INTRON	STK11	ENSG00000118046.17	ENST00000585748.2:ENST00000326873.12:ENST00000652231.1:ENST00000593219.5:ENST00000589152.5:ENST00000585851.1:ENST00000586358.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	53	2	1.58964	1.82585	2.06206	0.0408	0.0135396	0.1451	0.101363
chr14	101765267	101765366	5818530	0	+	0.363636	(0.35,0.378]	chr14	551818	1	UTR3	UTR3:EXON_MRNA:INTRON	PPP2R5C	ENSG00000078304.20	ENST00000694906.1:ENST00000422945.6:ENST00000554442.5:ENST00000556068.5:ENST00000556260.6:ENST00000328724.9:ENST00000554504.1:ENST00000553890.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	14	134	2	1.76452	1.82578	1.88704	0.0109566	0.00509272	0.0873179	0.0646039
chr1	67423504	67423601	477560	0	-	0.556701	(0.515,0.57]	chr1	57477	30	INTRON	INTRON	SERBP1	ENSG00000142864.15	ENST00000370994.8:ENST00000361219.11:ENST00000370995.6:ENST00000370990.5:ENST00000493607.1:ENST00000484880.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	32	2	1.79136	1.825715	1.86007	0.0638444	0.0526611	0.178401	0.177811
chr2	161322566	161322666	901253	0	+	0.53	(0.515,0.57]	chr2	99704	33	INTRON	INTRON	PSMD14	ENSG00000115233.12	ENST00000409682.8:ENST00000437630.1	protein_coding	protein_coding	protein_coding	protein_coding	4	32	2	1.79136	1.825715	1.86007	0.0638444	0.0526611	0.178401	0.177811
chr2	178434343	178434439	930474	0	+	0.53125	(0.515,0.57]	chr2	102183	11	EXON_LNCRNA	EXON_LNCRNA:INTRON	CHROMR	ENSG00000223960.8	ENST00000453026.7:ENST00000663803.1:ENST00000671679.1:ENST00000671256.1	lncRNA	lncRNA	lncRNA	lncRNA	4	32	2	1.79136	1.825715	1.86007	0.0638444	0.0526611	0.178401	0.177811
chr7	100692839	100692938	3587536	0	-	0.535354	(0.515,0.57]	chr7	334643	29	INTRON	INTRON	GIGYF1	ENSG00000146830.11	ENST00000678049.1:ENST00000646601.1:ENST00000643385.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	32	2	1.79136	1.825715	1.86007	0.0638444	0.0526611	0.178401	0.177811
chrX	48913465	48913560	7815640	0	-	0.431579	(0.408,0.44]	chrX	796797	4	UTR3	UTR3:EXON_MRNA	PIM2	ENSG00000102096.9	ENST00000376509.4	protein_coding	protein_coding	protein_coding	protein_coding	47	405	2	1.77335	1.8257050000000001	1.87806	0.00162386	5.38827e-4	0.0367966	0.0210114
chr15	28259889	28259985	6123425	0	-	0.479167	(0.476,0.515]	chr15	583323	23	INTRON	INTRON	HERC2	ENSG00000128731.18	ENST00000261609.13:ENST00000564734.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	79	2	1.65426	1.825625	1.99699	0.0231344	0.0110277	0.126939	0.0873897
chr11	14646352	14646452	4743642	0	+	0.39	(0.378,0.408]	chr11	439279	9	INTRON	INTRON	PDE3B	ENSG00000152270.9	ENST00000282096.9:ENST00000455098.2:ENST00000534317.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	66	2	1.53052	1.825615	2.12071	0.0744544	0.00601933	0.192012	0.0700813
chr8	129541543	129541643	4060698	0	-	0.35	(0.32,0.35]	chr8	369648	310	INTRON	INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1:ENST00000676273.1:ENST00000667643.1:ENST00000668791.1:ENST00000663716.1:ENST00000663572.1:ENST00000676148.1:ENST00000667962.1:ENST00000674877.1:ENST00000675316.1:ENST00000674656.1:ENST00000446592.7:ENST00000667341.1:ENST00000675186.1:ENST00000652971.1:ENST00000661447.1:ENST00000674863.1:ENST00000675498.1:ENST00000675527.1:ENST00000676108.1:ENST00000657647.1:ENST00000675589.1:ENST00000675913.1:ENST00000675109.1:ENST00000671632.1:ENST00000671311.1:ENST00000676099.1:ENST00000660652.1:ENST00000675522.1:ENST00000675183.1:ENST00000658861.1:ENST00000663991.1:ENST00000675044.1:ENST00000675435.1:ENST00000674639.1:ENST00000676069.1:ENST00000675532.1:ENST00000674762.1:ENST00000523151.6:ENST00000675948.1:ENST00000665364.1:ENST00000657251.1:ENST00000675166.1:ENST00000674883.1:ENST00000675867.1:ENST00000674580.1:ENST00000675393.1:ENST00000520048.1:ENST00000674906.1:ENST00000676030.1:ENST00000670588.1:ENST00000675072.1:ENST00000664936.1:ENST00000652914.1:ENST00000657069.1	lncRNA	lncRNA	lncRNA	lncRNA	7	73	2	1.72405	1.82555	1.92705	0.0275418	0.0267365	0.137011	0.123349
chr3	50102292	50102391	1424625	0	+	0.464646	(0.44,0.476]	chr3	150133	2	EXON_MRNA	EXON_MRNA:INTRON	RBM5	ENSG00000003756.17	ENST00000347869.8:ENST00000404526.6:ENST00000464087.6:ENST00000395174.6:ENST00000496179.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	44	2	1.35267	1.825545	2.29842	0.060678	0.0552483	0.192323	0.165463
chr7	23459977	23460077	3503562	0	-	0.45	(0.44,0.476]	chr7	326910	288	INTRON	INTRON	IGF2BP3	ENSG00000136231.14	ENST00000258729.8:ENST00000421467.6:ENST00000468263.5:ENST00000491719.5:ENST00000476938.5:ENST00000468005.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	81	2	1.4317	1.8255	2.2193	0.0304668	0.00896114	0.143385	0.0800073
chr5	132299906	132300005	2486219	0	+	0.373737	(0.35,0.378]	chr5	237204	39	INTRON	INTRON	SLC22A4	ENSG00000197208.6	ENST00000200652.4:ENST00000491257.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	68	2	1.7339	1.82548	1.91706	0.026412	0.0260366	0.133676	0.122506
chr1	246180746	246180846	677440	0	-	0.28	[0,0.28]	chr1	79721	845	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000391836.3:ENST00000453676.5:ENST00000462422.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	143	2	1.62418	1.825465	2.02675	0.0298451	0.00731917	0.129138	0.0762929
chr1	17421515	17421608	384800	0	-	0.354839	(0.35,0.378]	chr1	45471	3	INTRON	INTRON	RCC2	ENSG00000179051.14	ENST00000375436.9:ENST00000375433.3	protein_coding	protein_coding	protein_coding	protein_coding	9	79	2	1.30814	1.82546	2.34278	0.0524547	0.0129593	0.160552	0.0991015
chr10	130176081	130176180	4536735	0	+	0.292929	(0.28,0.32]	chr10	418830	6	INTRON	INTRON	GLRX3	ENSG00000108010.12	ENST00000331244.10:ENST00000481034.1:ENST00000368644.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	15	165	2	1.79593	1.825385	1.85484	0.0147274	0.00435403	0.0983813	0.0603078
chr21	33558585	33558679	7397586	0	+	0.414894	(0.408,0.44]	chr21	753527	12	UTR3	UTR3:EXON_MRNA:INTRON	SON	ENSG00000159140.22	ENST00000356577.10:ENST00000381692.6:ENST00000695559.1:ENST00000455528.5:ENST00000300278.8:ENST00000381679.8:ENST00000436227.5:ENST00000421541.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	18	150	2	1.77175	1.8253	1.87885	0.00827079	0.00294106	0.0774402	0.0497174
chr7	105019333	105019433	3374669	0	+	0.26	[0,0.28]	chr7	315854	44	INTRON	INTRON	KMT2E	ENSG00000005483.22	ENST00000622386.2:ENST00000257745.9:ENST00000334884.9:ENST00000311117.8:ENST00000478990.5:ENST00000480368.5:ENST00000495267.5:ENST00000476671.5:ENST00000667857.1:ENST00000474203.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	117	2	1.71434	1.82527	1.9362	0.0379383	0.0103279	0.141416	0.0894692
chr8	129442902	129443001	4059701	0	-	0.474747	(0.44,0.476]	chr8	369590	12	INTRON	INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1:ENST00000676273.1:ENST00000667643.1:ENST00000668791.1:ENST00000663716.1:ENST00000663572.1:ENST00000676148.1:ENST00000667962.1:ENST00000674877.1:ENST00000675316.1:ENST00000674656.1:ENST00000446592.7:ENST00000667341.1:ENST00000675186.1:ENST00000652971.1:ENST00000661447.1:ENST00000674863.1:ENST00000675498.1:ENST00000675527.1:ENST00000676108.1:ENST00000657647.1:ENST00000675589.1:ENST00000675913.1:ENST00000675109.1:ENST00000671632.1:ENST00000671311.1:ENST00000676099.1:ENST00000660652.1:ENST00000675522.1:ENST00000675183.1:ENST00000658861.1:ENST00000663991.1:ENST00000675044.1:ENST00000675435.1:ENST00000674639.1:ENST00000676069.1:ENST00000675532.1:ENST00000674762.1:ENST00000523151.6:ENST00000675948.1:ENST00000665364.1:ENST00000657251.1:ENST00000675166.1:ENST00000674883.1:ENST00000675867.1:ENST00000674580.1:ENST00000675393.1:ENST00000520048.1:ENST00000674906.1:ENST00000676030.1:ENST00000670588.1:ENST00000675072.1:ENST00000664936.1:ENST00000652914.1:ENST00000657069.1	lncRNA	lncRNA	lncRNA	lncRNA	7	64	2	1.81595	1.82527	1.83459	0.0317953	0.0198542	0.14477	0.109608
chr11	65433058	65433157	4805873	0	+	0.393939	(0.378,0.408]	chr11	446554	104	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	79	696	2	1.65688	1.825035	1.99319	0.00241944	1.11677e-4	0.0443107	0.00900345
chr1	32362774	32362871	414866	0	-	0.463918	(0.44,0.476]	chr1	50027	4	EXON_MRNA	EXON_MRNA:INTRON	FAM229A	ENSG00000225828.2	ENST00000416512.1:ENST00000415596.1	protein_coding	retained_intron	protein_coding	retained_intron:processed_transcript	7	62	2	1.7651	1.824965	1.88483	0.039388	0.0149825	0.143072	0.107704
chr4	55611168	55611268	2150445	0	-	0.46	(0.44,0.476]	chr4	211629	16	INTRON	INTRON	NMU	ENSG00000109255.11	ENST00000511469.5:ENST00000264218.7:ENST00000505262.5:ENST00000507338.1:ENST00000515325.5:ENST00000509371.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	62	2	1.7651	1.824965	1.88483	0.039388	0.0149825	0.143072	0.107704
chr6	157835397	157835497	3015884	0	+	0.41	(0.408,0.44]	chr6	281353	53	INTRON	INTRON	SNX9	ENSG00000130340.17	ENST00000614703.4:ENST00000614800.4:ENST00000680863.1:ENST00000679814.1:ENST00000680464.1:ENST00000681186.1:ENST00000679732.1:ENST00000681183.1:ENST00000681534.1:ENST00000681651.1:ENST00000680089.1:ENST00000680078.1:ENST00000680974.1:ENST00000680095.1:ENST00000680015.1:ENST00000681138.1:ENST00000392185.8:ENST00000679790.1:ENST00000680495.1:ENST00000679691.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	104	2	1.74367	1.824905	1.90614	0.0103993	0.00902611	0.0854042	0.0851577
chr10	70165335	70165434	4640842	0	-	0.40404	(0.378,0.408]	chr10	426908	22	INTRON	INTRON	SAR1A	ENSG00000079332.15	ENST00000373242.6:ENST00000373241.9:ENST00000373239.2	protein_coding	protein_coding	protein_coding	protein_coding	8	72	2	1.54765	1.824885	2.10212	0.0334147	0.0141232	0.146709	0.0959618
chr19	18453239	18453338	7152317	0	-	0.383838	(0.378,0.408]	chr19	722846	12	INTRON	INTRON	ELL	ENSG00000105656.13	ENST00000262809.9:ENST00000594635.6:ENST00000596124.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	72	2	1.54765	1.824885	2.10212	0.0334147	0.0141232	0.146709	0.0959618
chr15	30651415	30651514	5992532	0	+	0.464646	(0.44,0.476]	chr15	569759	20	INTRON	INTRON	ENSG00000284906:ENSG00000285035	ENSG00000284906.3:ENSG00000285035.2	ENST00000685924.1:ENST00000563110.6:ENST00000642399.2:ENST00000566548.5	protein_coding	protein_coding	protein_coding:transcribed_unprocessed_pseudogene	protein_coding:nonsense_mediated_decay:processed_transcript:transcribed_unprocessed_pseudogene	10	87	2	1.49801	1.8246850000000001	2.15136	0.0300375	0.0061794	0.142135	0.0677395
chr3	6642131	6642231	1357665	0	+	0.41	(0.408,0.44]	chr3	142522	577	INTRON	INTRON	ENSG00000189229	ENSG00000189229.12	ENST00000433639.1:ENST00000655754.1:ENST00000658468.1:ENST00000669512.1:ENST00000667028.1:ENST00000655541.1:ENST00000668643.1:ENST00000671568.1:ENST00000671036.1:ENST00000669798.1:ENST00000655753.1:ENST00000655856.1:ENST00000658398.1:ENST00000661518.1:ENST00000661279.1:ENST00000655495.1:ENST00000663041.1:ENST00000659827.1:ENST00000667716.1:ENST00000668416.1:ENST00000658133.1:ENST00000342990.4:ENST00000660054.1:ENST00000671370.1	lncRNA	lncRNA	lncRNA	lncRNA	10	88	2	1.6007	1.82456	2.04842	0.02345	0.00797555	0.11867	0.0798772
chr8	22421364	22421462	3713185	0	+	0.357143	(0.35,0.378]	chr8	344863	18	UTR3	UTR3:EXON_MRNA:INTRON	SLC39A14	ENSG00000104635.15	ENST00000359741.10:ENST00000381237.6:ENST00000240095.10	protein_coding	protein_coding	protein_coding	protein_coding	7	68	2	1.49028	1.824525	2.15877	0.0590834	0.0102036	0.168067	0.089002
chr1	65303055	65303155	136024	0	+	0.3	(0.28,0.32]	chr1	15346	378	INTRON	INTRON	DNAJC6	ENSG00000116675.16	ENST00000463018.5:ENST00000494710.6:ENST00000263441.11:ENST00000395325.7:ENST00000483402.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	59	2	1.68409	1.82442	1.96475	0.0548665	0.0428385	0.165463	0.162255
chr9	34186887	34186987	4111347	0	+	0.37	(0.35,0.378]	chr9	374718	73	INTRON	INTRON	UBAP1	ENSG00000165006.14	ENST00000625521.2:ENST00000379186.8:ENST00000297661.9:ENST00000626262.2	protein_coding	protein_coding	protein_coding	protein_coding	8	78	2	1.6122	1.824375	2.03655	0.0616849	0.00535994	0.174021	0.0663076
chr7	12346950	12347048	3484840	0	-	0.357143	(0.35,0.378]	chr7	325854	6	INTRON	INTRON	VWDE	ENSG00000146530.15	ENST00000275358.8:ENST00000452576.6:ENST00000521169.5:ENST00000649524.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	18	170	2	1.59568	1.8243649999999998	2.05305	0.0127194	0.00173249	0.0926667	0.0385028
chr3	37287712	37287812	1396203	0	+	0.29	(0.28,0.32]	chr3	146350	1	SS5_PROX	SS5_PROX:INTRON	GOLGA4	ENSG00000144674.17	ENST00000435830.6:ENST00000444882.5:ENST00000356847.8:ENST00000450863.6:ENST00000361924.7:ENST00000429018.5:ENST00000419177.3:ENST00000437131.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	92	2	1.4428	1.8243	2.2058	0.0712927	0.00496409	0.185716	0.0646039
chr16	89780457	89780552	6544437	0	-	0.505263	(0.476,0.515]	chr16	634529	1	INTRON	INTRON	FANCA	ENSG00000187741.16	ENST00000561667.2:ENST00000389301.8:ENST00000568369.6:ENST00000564475.6:ENST00000696275.1:ENST00000696287.1:ENST00000696286.1:ENST00000696274.1:ENST00000696291.1:ENST00000696276.1:ENST00000567205.2:ENST00000567284.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	79	2	1.69382	1.824255	1.95469	0.0219532	0.0115753	0.115201	0.0962115
chr6	16129909	16129982	2825780	0	+	0.534247	(0.515,0.57]	chr6	265303	1	INTRON	INTRON	MYLIP	ENSG00000007944.15	ENST00000356840.8:ENST00000349606.4	protein_coding	protein_coding	protein_coding	protein_coding	10	70	2	1.62864	1.8242099999999999	2.01978	0.0165522	0.0137628	0.102621	0.10247
chr19	11123943	11124042	7017183	0	+	0.515152	(0.476,0.515]	chr19	697502	2	INTRON	INTRON	LDLR	ENSG00000130164.14	ENST00000557933.5:ENST00000558518.6:ENST00000545707.5:ENST00000535915.5:ENST00000455727.6:ENST00000558013.5:ENST00000252444.9	protein_coding	protein_coding	protein_coding	protein_coding	11	99	2	1.69413	1.8241749999999999	1.95422	0.0200655	0.00584847	0.121043	0.0667594
chr7	123748217	123748317	3632653	0	-	0.54	(0.515,0.57]	chr7	337582	2	SS5_PROX	SS5_PROX:INTRON	WASL	ENSG00000106299.8	ENST00000223023.5	protein_coding	protein_coding	protein_coding	protein_coding	7	53	2	1.75372	1.82417	1.89462	0.0386904	0.0139002	0.14279	0.10247
chr1	244436424	244436524	672687	0	-	0.41	(0.408,0.44]	chr1	79569	2	SS5_PROX	SS5_PROX:INTRON	ADSS2	ENSG00000035687.10	ENST00000366535.4	protein_coding	protein_coding	protein_coding	protein_coding	5	46	2	1.64062	1.82415	2.00768	0.0557275	0.035843	0.165463	0.152216
chr11	34084022	34084118	4767982	0	+	0.385417	(0.378,0.408]	chr11	440992	6	INTRON	INTRON	CAPRIN1	ENSG00000135387.21	ENST00000341394.9:ENST00000528856.5:ENST00000389645.7:ENST00000532820.5:ENST00000530820.5:ENST00000529307.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	100	2	1.56924	1.824135	2.07903	0.0267731	0.00428711	0.123349	0.0599065
chr22	40813316	40813415	7590319	0	-	0.515152	(0.476,0.515]	chr22	777203	133	INTRON	INTRON	SLC25A17	ENSG00000100372.15	ENST00000544408.5:ENST00000435456.7:ENST00000491545.5:ENST00000263255.10:ENST00000447566.5:ENST00000420970.5:ENST00000430221.5:ENST00000427084.5:ENST00000458600.5:ENST00000443810.5:ENST00000412879.5:ENST00000426396.5:ENST00000434193.5:ENST00000449676.5:ENST00000434185.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	45	2	1.58335	1.8241299999999998	2.06491	0.0640461	0.0304733	0.177882	0.143385
chr22	21508644	21508744	7560177	0	-	0.4	(0.378,0.408]	chr22	773318	162	INTRON	INTRON	PI4KAP2	ENSG00000183506.17	ENST00000450651.5:ENST00000467443.5:ENST00000479693.1:ENST00000476537.1:ENST00000491562.5	transcribed_unitary_pseudogene	retained_intron	transcribed_unitary_pseudogene	retained_intron:processed_transcript	32	283	2	1.37808	1.824115	2.27015	0.0151485	1.2385e-4	0.0994339	0.00952291
chr6	57096301	57096399	2878117	0	+	0.479592	(0.476,0.515]	chr6	273232	29	INTRON	INTRON	ZNF451	ENSG00000112200.17	ENST00000515290.5:ENST00000510483.5:ENST00000357489.7:ENST00000370708.8:ENST00000370702.5:ENST00000444273.6:ENST00000370711.9:ENST00000508603.5:ENST00000370706.9:ENST00000491832.6:ENST00000370710.10:ENST00000502749.1:ENST00000504603.1:ENST00000509071.5:ENST00000510989.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	63	2	1.48441	1.82409	2.16377	0.0315624	0.0243026	0.144381	0.12011
chr16	81446939	81447039	6405018	0	+	0.6	(0.57,1]	chr16	615026	10	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8	protein_coding	protein_coding	protein_coding	protein_coding	14	54	2	1.25588	1.824045	2.39221	0.0303256	0.00352602	0.130186	0.0546236
chr4	73205096	73205196	2160289	0	-	0.38	(0.378,0.408]	chr4	212794	272	INTRON	INTRON	ANKRD17	ENSG00000132466.20	ENST00000358602.9:ENST00000558247.5:ENST00000330838.10:ENST00000509867.6:ENST00000561029.1:ENST00000559367.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	100	2	1.67662	1.824005	1.97139	0.0243251	0.00460762	0.12011	0.0625743
chr20	50916846	50916946	7355732	0	-	0.36	(0.35,0.378]	chr20	750099	72	INTRON	INTRON	ADNP	ENSG00000101126.18	ENST00000621696.5:ENST00000673732.1:ENST00000396029.8:ENST00000644386.1:ENST00000396032.8:ENST00000645081.1:ENST00000642364.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	114	2	1.5543	1.82389	2.09348	0.0236849	0.00418185	0.118716	0.0591344
chr1	173480141	173480238	255540	0	+	0.381443	(0.378,0.408]	chr1	30493	23	INTRON	INTRON	PRDX6	ENSG00000117592.9	ENST00000460950.1:ENST00000340385.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	74	2	1.71619	1.82386	1.93153	0.0300647	0.0127237	0.129153	0.0986314
chr8	26303250	26303349	3716213	0	+	0.363636	(0.35,0.378]	chr8	345368	43	INTRON	INTRON	PPP2R2A	ENSG00000221914.11	ENST00000380737.8:ENST00000520329.5:ENST00000518254.5:ENST00000524169.5:ENST00000518397.5:ENST00000522535.5:ENST00000665949.1:ENST00000522150.5:ENST00000523473.5:ENST00000521095.5:ENST00000660435.1:ENST00000523925.5:ENST00000524099.5:ENST00000315985.7:ENST00000519636.5:ENST00000522482.5:ENST00000521557.5:ENST00000519439.5:ENST00000521484.5:ENST00000523964.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	15	141	2	1.72243	1.8238249999999998	1.92522	0.0162944	0.00256457	0.101517	0.0466761
chr7	6721521	6721621	3273993	0	+	0.46	(0.44,0.476]	chr7	304491	97	INTRON	INTRON	PMS2CL	ENSG00000187953.10	ENST00000486256.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	9	81	2	1.4962	1.82378	2.15136	0.0392301	0.0061794	0.161534	0.0677395
chr10	32953492	32953592	4592661	0	-	0.42	(0.408,0.44]	chr10	423519	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ITGB1	ENSG00000150093.20	ENST00000609742.3:ENST00000678989.1:ENST00000677363.1:ENST00000302278.8:ENST00000396033.6:ENST00000417122.7:ENST00000676895.1:ENST00000678120.1:ENST00000676623.1:ENST00000678952.1:ENST00000677999.1:ENST00000679187.1:ENST00000678479.1:ENST00000676964.1:ENST00000488494.6:ENST00000488427.2:ENST00000678591.1:ENST00000678943.1:ENST00000437302.6:ENST00000678701.1:ENST00000678766.1:ENST00000676659.1:ENST00000677310.1:ENST00000474568.6:ENST00000676460.1:ENST00000475184.6:ENST00000484088.5:ENST00000480226.5:ENST00000534049.5:ENST00000528877.5:ENST00000414670.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	65	2	1.64527	1.823775	2.00228	0.0389732	0.0175998	0.143072	0.11319
chr4	6675063	6675162	1921502	0	+	0.474747	(0.44,0.476]	chr4	192960	6	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ENSG00000170846	ENSG00000170846.17	ENST00000645429.1:ENST00000307533.10:ENST00000635031.1:ENST00000444232.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	13	116	2	1.74385	1.8237700000000001	1.90369	0.0119796	0.00551222	0.0962115	0.0648867
chr4	68313414	68313511	2154501	0	-	0.329897	(0.32,0.35]	chr4	212203	32	UTR3	UTR3:EXON_MRNA	YTHDC1	ENSG00000083896.13	ENST00000344157.9:ENST00000355665.7:ENST00000579690.5	protein_coding	protein_coding	protein_coding	protein_coding	10	96	2	1.61555	1.8237649999999999	2.03198	0.0193728	0.0165587	0.110511	0.108916
chr16	8003949	8004048	6440548	0	-	0.414141	(0.408,0.44]	chr16	620345	257	INTRON	INTRON	ENSG00000260289	ENSG00000260289.2	ENST00000670665.1:ENST00000654046.1:ENST00000567103.2	lncRNA	lncRNA	lncRNA	lncRNA	14	112	2	1.19131	1.8236700000000001	2.45603	0.0458022	0.00171857	0.164831	0.0374701
chr16	89592442	89592539	6421105	0	+	0.443299	(0.44,0.476]	chr16	616407	8	INTRON	INTRON	CPNE7	ENSG00000178773.15	ENST00000319518.13:ENST00000268720.9:ENST00000529800.5:ENST00000568977.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	19	165	2	1.69338	1.8236050000000001	1.95383	0.00511261	0.00489311	0.0641889	0.0627362
chr2	20295405	20295502	1076219	0	-	0.340206	(0.32,0.35]	chr2	114988	5	INTRON	INTRON	PUM2	ENSG00000055917.16	ENST00000338086.9:ENST00000361078.7:ENST00000440577.5	protein_coding	protein_coding	protein_coding	protein_coding	8	84	2	1.46414	1.823565	2.18299	0.065059	0.00505063	0.179599	0.0646039
chr1	37542682	37542780	424150	0	-	0.377551	(0.35,0.378]	chr1	51278	12	INTRON	INTRON	SNIP1	ENSG00000163877.11	ENST00000296215.8:ENST00000468040.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	88	2	1.74668	1.823545	1.90041	0.0198631	0.0145936	0.109608	0.105992
chr20	4006455	4006555	7309317	0	-	0.35	(0.32,0.35]	chr20	744300	317	INTRON	INTRON	RNF24	ENSG00000101236.17	ENST00000336095.10:ENST00000358395.11:ENST00000545616.2	protein_coding	protein_coding	protein_coding	protein_coding	6	64	2	1.81388	1.823515	1.83315	0.0371014	0.0313348	0.144381	0.139201
chr16	66721184	66721282	6501914	0	-	0.285714	(0.28,0.32]	chr16	628974	4	UTR3	UTR3:EXON_MRNA	DYNC1LI2	ENSG00000135720.13	ENST00000258198.7	protein_coding	protein_coding	protein_coding	protein_coding	9	97	2	1.6789	1.82346	1.96802	0.0251578	0.017572	0.12011	0.11319
chr5	37289027	37289126	2601903	0	-	0.525253	(0.515,0.57]	chr5	247329	10	UTR3	UTR3:EXON_MRNA	NUP155	ENSG00000113569.16	ENST00000231498.8	protein_coding	protein_coding	protein_coding	protein_coding	10	74	2	1.61321	1.823445	2.03368	0.0202182	0.00803127	0.109913	0.0803474
chr12	116850612	116850709	5234037	0	+	0.412371	(0.408,0.44]	chr12	496481	13	UTR3	UTR3:EXON_MRNA:INTRON	RNFT2	ENSG00000135119.15	ENST00000407967.7:ENST00000392549.7:ENST00000257575.9:ENST00000547718.5:ENST00000551251.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	11	87	2	1.31633	1.82336	2.33039	0.0383278	0.00598147	0.158629	0.0674604
chr14	90801201	90801300	5951594	0	-	0.424242	(0.408,0.44]	chr14	565050	145	INTRON	INTRON	TTC7B	ENSG00000165914.15	ENST00000328459.11:ENST00000553948.1	protein_coding	protein_coding	protein_coding	protein_coding	9	80	2	1.66945	1.82333	1.97721	0.0218479	0.0121661	0.123836	0.0910127
chr14	101888594	101888692	5819786	0	+	0.479592	(0.476,0.515]	chr14	551895	47	INTRON	INTRON	PPP2R5C	ENSG00000078304.20	ENST00000694906.1:ENST00000422945.6:ENST00000328724.9:ENST00000350249.7:ENST00000557621.5:ENST00000334743.9:ENST00000445439.7:ENST00000557095.5:ENST00000554137.5:ENST00000556218.5:ENST00000557534.1:ENST00000557716.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	13	112	2	1.57305	1.8232499999999998	2.07345	0.0202368	0.00282986	0.109958	0.0491645
chr1	23963065	23963164	45020	0	+	0.393939	(0.378,0.408]	chr1	5542	13	UTR3	UTR3:EXON_MRNA	PNRC2	ENSG00000189266.13	ENST00000647887.1:ENST00000334351.8	protein_coding	protein_coding	protein_coding	protein_coding	11	90	2	1.37293	1.82301	2.27309	0.0317131	0.00769587	0.144715	0.0754631
chr6	89818406	89818506	3162026	0	-	0.44	(0.408,0.44]	chr6	294886	145	INTRON	INTRON	MDN1	ENSG00000112159.12	ENST00000369393.8:ENST00000629399.2:ENST00000439638.1	protein_coding	protein_coding	protein_coding	protein_coding	12	101	2	1.76662	1.8229700000000002	1.87932	0.0172104	0.00636414	0.104099	0.0724478
chr14	101763667	101763765	5818513	0	+	0.459184	(0.44,0.476]	chr14	551813	3	INTRON	INTRON	PPP2R5C	ENSG00000078304.20	ENST00000694906.1:ENST00000422945.6:ENST00000554442.5:ENST00000556068.5:ENST00000556260.6:ENST00000328724.9:ENST00000554504.1:ENST00000553890.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	14	122	2	1.49345	1.8228499999999999	2.15225	0.0271885	0.00129761	0.123904	0.0333764
chr3	52691829	52691929	1429251	0	+	0.49	(0.476,0.515]	chr3	151006	2	SS5_PROX	SS5_PROX:INTRON	GNL3	ENSG00000163938.17	ENST00000394799.6:ENST00000418458.6:ENST00000496254.5:ENST00000484022.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	62	2	1.58842	1.8227799999999998	2.05714	0.0406588	0.0156961	0.161534	0.101453
chr16	85575544	85575644	6415587	0	+	0.44	(0.408,0.44]	chr16	615470	188	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	20	177	2	1.80556	1.8225250000000002	1.83949	0.00424264	0.00341411	0.0595557	0.0517761
chr8	129535853	129535953	4060641	0	-	0.47	(0.44,0.476]	chr8	369648	253	INTRON	INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1:ENST00000676273.1:ENST00000667643.1:ENST00000668791.1:ENST00000663716.1:ENST00000663572.1:ENST00000676148.1:ENST00000667962.1:ENST00000674877.1:ENST00000675316.1:ENST00000674656.1:ENST00000446592.7:ENST00000667341.1:ENST00000675186.1:ENST00000652971.1:ENST00000661447.1:ENST00000674863.1:ENST00000675498.1:ENST00000675527.1:ENST00000676108.1:ENST00000657647.1:ENST00000675589.1:ENST00000675913.1:ENST00000675109.1:ENST00000671632.1:ENST00000671311.1:ENST00000676099.1:ENST00000660652.1:ENST00000675522.1:ENST00000675183.1:ENST00000658861.1:ENST00000663991.1:ENST00000675044.1:ENST00000675435.1:ENST00000674639.1:ENST00000676069.1:ENST00000675532.1:ENST00000674762.1:ENST00000523151.6:ENST00000675948.1:ENST00000665364.1:ENST00000657251.1:ENST00000675166.1:ENST00000674883.1:ENST00000675867.1:ENST00000674580.1:ENST00000675393.1:ENST00000520048.1:ENST00000674906.1:ENST00000676030.1:ENST00000670588.1:ENST00000675072.1:ENST00000664936.1:ENST00000652914.1:ENST00000657069.1	lncRNA	lncRNA	lncRNA	lncRNA	13	107	2	1.38505	1.822485	2.25992	0.0290746	0.00324123	0.127972	0.0524329
chr3	32748632	32748731	1393763	0	+	0.474747	(0.44,0.476]	chr3	145926	108	INTRON	INTRON	CNOT10	ENSG00000182973.20	ENST00000331889.10:ENST00000328834.10:ENST00000435630.5:ENST00000454516.7:ENST00000416457.5:ENST00000430408.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	62	2	1.38039	1.8224550000000002	2.26452	0.0762718	0.00654074	0.195539	0.0735539
chr3	185686556	185686656	1884956	0	-	0.37	(0.35,0.378]	chr3	188537	1	SS5_PROX	SS5_PROX:INTRON	IGF2BP2	ENSG00000073792.16	ENST00000382199.7:ENST00000346192.7:ENST00000457616.6:ENST00000421047.3:ENST00000494906.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	49	2	1.71046	1.82239	1.93432	0.0481438	0.0441269	0.162255	0.153019
chr17	37316853	37316953	6762144	0	-	0.49	(0.476,0.515]	chr17	664944	172	INTRON	INTRON	ACACA	ENSG00000278540.5	ENST00000616317.5:ENST00000614428.4:ENST00000613146.4:ENST00000615229.4:ENST00000621960.1:ENST00000617548.1:ENST00000616352.4:ENST00000614789.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	66	2	1.61586	1.822375	2.02889	0.0567093	0.00978617	0.185107	0.0835427
chr1	171593021	171593119	254333	0	+	0.357143	(0.35,0.378]	chr1	30290	13	UTR3	UTR3:EXON_MRNA	PRRC2C	ENSG00000117523.18	ENST00000647382.2:ENST00000367742.7:ENST00000338920.8:ENST00000426496.6:ENST00000495585.1:ENST00000644916.1	protein_coding	protein_coding	protein_coding	protein_coding	9	83	2	1.34988	1.8223500000000001	2.29482	0.0498069	0.00743782	0.17488	0.0746192
chr22	20755757	20755856	7558627	0	-	0.383838	(0.378,0.408]	chr22	773092	22	INTRON	INTRON	PI4KA	ENSG00000241973.11	ENST00000255882.11:ENST00000466162.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	14	115	2	1.44038	1.8223500000000001	2.20432	0.0182819	0.00529064	0.115629	0.0636343
chr10	118685730	118685829	4703713	0	-	0.343434	(0.32,0.35]	chr10	433843	95	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	CACUL1	ENSG00000151893.15	ENST00000544392.5:ENST00000369151.8:ENST00000493518.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	81	2	1.75437	1.822335	1.8903	0.0298043	0.017109	0.129138	0.110916
chr14	102653203	102653303	5823139	0	+	0.46	(0.44,0.476]	chr14	552490	595	INTRON	INTRON	RCOR1	ENSG00000089902.10	ENST00000262241.7	protein_coding	protein_coding	protein_coding	protein_coding	7	62	2	1.56252	1.8223150000000001	2.08211	0.0465207	0.0130715	0.151387	0.0996047
chr22	20027582	20027682	7477808	0	+	0.49	(0.476,0.515]	chr22	762628	59	INTRON	INTRON	TANGO2	ENSG00000183597.16	ENST00000401886.5:ENST00000471707.5:ENST00000432198.5:ENST00000475446.5:ENST00000420290.6:ENST00000432883.5:ENST00000434570.6:ENST00000447208.6:ENST00000456048.5:ENST00000411907.5:ENST00000398042.6:ENST00000399807.7:ENST00000450664.5:ENST00000450019.5:ENST00000327374.9:ENST00000479679.5:ENST00000430807.5:ENST00000401833.5:ENST00000434168.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	78	2	1.62505	1.8222900000000002	2.01953	0.0210589	0.0163662	0.112542	0.109586
chr1	35545885	35545985	421765	0	-	0.37	(0.35,0.378]	chr1	50820	121	INTRON	INTRON	KIAA0319L	ENSG00000142687.18	ENST00000325722.8:ENST00000426982.6:ENST00000440579.5:ENST00000482929.6:ENST00000478463.6:ENST00000470388.5:ENST00000492888.1:ENST00000469892.5:ENST00000494948.1:ENST00000476329.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	64	2	1.3017	1.8222399999999999	2.34278	0.0757564	0.0129593	0.194427	0.0991015
chr1	93361335	93361434	164355	0	+	0.353535	(0.35,0.378]	chr1	17855	8	UTR3	UTR3:EXON_MRNA	DR1	ENSG00000117505.13	ENST00000370272.9	protein_coding	protein_coding	protein_coding	protein_coding	7	64	2	1.3017	1.8222399999999999	2.34278	0.0757564	0.0129593	0.194427	0.0991015
chr11	47990407	47990507	4789317	0	+	0.45	(0.44,0.476]	chr11	443265	90	INTRON	INTRON	PTPRJ	ENSG00000149177.14	ENST00000418331.7:ENST00000440289.6:ENST00000527952.1:ENST00000534219.5	protein_coding	protein_coding	protein_coding	protein_coding	5	45	2	1.77101	1.82213	1.87325	0.0693975	0.0265709	0.184298	0.134088
chr3	50101896	50101995	1424621	0	+	0.444444	(0.44,0.476]	chr3	150132	14	UTR3	UTR3:EXON_MRNA:INTRON	RBM5	ENSG00000003756.17	ENST00000347869.8:ENST00000404526.6:ENST00000469838.5:ENST00000464087.6:ENST00000395174.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	20	169	2	1.79505	1.8221	1.84915	0.00692643	0.00196414	0.0718189	0.0411469
chr12	116273263	116273363	5425507	0	-	0.33	(0.32,0.35]	chr12	518291	352	INTRON	INTRON	MED13L	ENSG00000123066.9	ENST00000281928.9:ENST00000650226.1:ENST00000548743.2:ENST00000551197.2:ENST00000650375.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	95	2	1.46414	1.822075	2.18001	0.065059	0.00302699	0.179599	0.0508897
chr14	30959112	30959211	5857199	0	-	0.474747	(0.44,0.476]	chr14	556504	25	INTRON	INTRON	STRN3	ENSG00000196792.12	ENST00000355683.9:ENST00000357479.10:ENST00000555358.5:ENST00000555152.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	54	2	1.71574	1.822055	1.92837	0.045256	0.0222222	0.149888	0.124303
chr19	23788956	23789056	7042695	0	+	0.43	(0.408,0.44]	chr19	702227	16	INTRON	INTRON	RPSAP58	ENSG00000288920.1	ENST00000471224.5:ENST00000692590.1:ENST00000475499.2:ENST00000686829.1:ENST00000689525.1:ENST00000691397.1:ENST00000688405.1:ENST00000687994.1:ENST00000484897.4:ENST00000685490.1:ENST00000462186.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	97	2	1.22006	1.82205	2.42404	0.0414473	0.00413548	0.161692	0.0566868
chr11	85998591	85998688	5014119	0	-	0.505155	(0.476,0.515]	chr11	472953	13	INTRON	INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000630913.2:ENST00000529760.5:ENST00000528398.5:ENST00000356360.9:ENST00000529016.5:ENST00000530542.1	protein_coding	protein_coding	protein_coding	protein_coding	6	51	2	1.53534	1.8220399999999999	2.10874	0.0476737	0.0285608	0.170116	0.12666
chr17	81562456	81562554	6848829	0	-	0.5	(0.476,0.515]	chr17	678117	8	UTR3	UTR3:EXON_MRNA:INTRON	NPLOC4	ENSG00000182446.14	ENST00000331134.11:ENST00000572760.5:ENST00000572346.5:ENST00000573519.5:ENST00000573876.1:ENST00000571714.5:ENST00000572824.1:ENST00000573212.5:ENST00000576713.6:ENST00000374747.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	62	2	1.27903	1.822015	2.365	0.0608608	0.0128901	0.19287	0.0926667
chr9	37230612	37230712	4118763	0	+	0.34	(0.32,0.35]	chr9	375389	437	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000461038.5:ENST00000488607.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	54	2	1.69107	1.82189	1.95271	0.0517392	0.0431213	0.162255	0.159306
chr10	28552045	28552145	4413994	0	+	0.5	(0.476,0.515]	chr10	407148	136	INTRON	INTRON	WAC	ENSG00000095787.24	ENST00000680735.1:ENST00000375664.8:ENST00000428935.6:ENST00000651598.1:ENST00000628285.3:ENST00000681112.1:ENST00000679570.1:ENST00000375646.5:ENST00000354911.9:ENST00000347934.8:ENST00000420266.6:ENST00000651885.1:ENST00000651441.1:ENST00000679398.1:ENST00000424454.5:ENST00000442148.6:ENST00000448193.5:ENST00000414108.6:ENST00000679428.1:ENST00000439676.5:ENST00000345541.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	37	2	1.72558	1.821875	1.91817	0.0767648	0.0459211	0.196164	0.164984
chr19	18508223	18508323	7152876	0	-	0.48	(0.476,0.515]	chr19	722886	324	INTRON	INTRON	ELL	ENSG00000105656.13	ENST00000262809.9:ENST00000594635.6:ENST00000596915.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	37	2	1.72558	1.821875	1.91817	0.0767648	0.0459211	0.196164	0.164984
chr20	3982489	3982589	7309077	0	-	0.51	(0.476,0.515]	chr20	744300	77	INTRON	INTRON	RNF24	ENSG00000101236.17	ENST00000336095.10:ENST00000358395.11:ENST00000545616.2	protein_coding	protein_coding	protein_coding	protein_coding	4	37	2	1.72558	1.821875	1.91817	0.0767648	0.0459211	0.196164	0.164984
chr3	185924772	185924871	1886465	0	-	0.454545	(0.44,0.476]	chr3	188623	9	EXON_MRNA	EXON_MRNA:INTRON	TRA2B	ENSG00000136527.19	ENST00000453386.7:ENST00000492417.5:ENST00000463328.5:ENST00000487615.5:ENST00000456380.5:ENST00000382191.4:ENST00000465245.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	91	2	1.58453	1.821865	2.0592	0.0293513	0.00556585	0.142102	0.0648867
chr2	96635355	96635452	1181170	0	-	0.329897	(0.32,0.35]	chr2	126526	8	INTRON	INTRON	KANSL3	ENSG00000114982.19	ENST00000354204.10:ENST00000431828.6:ENST00000487070.5:ENST00000420155.5:ENST00000670907.1:ENST00000666923.1:ENST00000597150.5:ENST00000444759.5:ENST00000452268.5:ENST00000425656.5:ENST00000448075.1:ENST00000451819.5:ENST00000416138.1:ENST00000418735.1:ENST00000475820.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	67	2	1.46273	1.821825	2.18092	0.0451962	0.0256608	0.163755	0.120491
chr5	133972270	133972370	2725727	0	-	0.44	(0.408,0.44]	chr5	256420	5	UTR3	UTR3:EXON_MRNA	VDAC1	ENSG00000213585.11	ENST00000265333.8:ENST00000395044.7:ENST00000395047.6	protein_coding	protein_coding	protein_coding	protein_coding	14	121	2	1.58636	1.821755	2.05715	0.0138518	0.00463619	0.0953077	0.0628302
chr7	12396473	12396572	3485367	0	-	0.262626	[0,0.28]	chr7	325970	23	INTRON	INTRON	VWDE	ENSG00000146530.15	ENST00000275358.8:ENST00000452576.6:ENST00000521169.5:ENST00000326715.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	128	2	1.44922	1.82154	2.19386	0.0495121	0.00599636	0.156383	0.0700606
chr6	132772249	132772349	3222552	0	-	0.29	(0.28,0.32]	chr6	299592	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	SLC18B1	ENSG00000146409.12	ENST00000275227.9:ENST00000647932.1:ENST00000650278.1:ENST00000650136.1:ENST00000650298.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	62	2	1.31424	1.821475	2.32871	0.0581621	0.0580847	0.188651	0.167723
chr7	156673885	156673985	3685795	0	-	0.37	(0.35,0.378]	chr7	341967	42	INTRON	INTRON	LMBR1	ENSG00000105983.23	ENST00000430825.3	protein_coding	processed_transcript	protein_coding	processed_transcript	9	91	2	1.38772	1.8214700000000001	2.25522	0.0555481	0.00456563	0.18407	0.0595107
chr7	119721050	119721149	3628548	0	-	0.313131	(0.28,0.32]	chr7	337319	157	INTRON	INTRON	LINC02476	ENSG00000225546.6	ENST00000660268.1:ENST00000431071.5	lncRNA	lncRNA	lncRNA	lncRNA	5	58	2	1.56134	1.821415	2.08149	0.0740624	0.031124	0.191153	0.143644
chr4	82897670	82897762	2180178	0	-	0.434783	(0.408,0.44]	chr4	214419	3	SS5_PROX	SS5_PROX:INTRON	SEC31A:THAP9-AS1	ENSG00000138674.17:ENSG00000251022.6	ENST00000355196.6:ENST00000503210.5:ENST00000507676.5:ENST00000506495.5:ENST00000507051.1:ENST00000504520.6:ENST00000504792.6:ENST00000512932.5:ENST00000511271.5:ENST00000508772.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	14	125	2	1.68673	1.8213400000000002	1.95595	0.011464	0.00448131	0.0956037	0.0593175
chr1	147158672	147158771	542221	0	-	0.464646	(0.44,0.476]	chr1	63573	37	UTR3	UTR3:EXON_MRNA	PRKAB2	ENSG00000131791.8	ENST00000254101.4	protein_coding	protein_coding	protein_coding	protein_coding	12	103	2	1.81921	1.8212899999999999	1.82337	0.0142184	0.0063815	0.0960818	0.0725747
chr2	27592086	27592186	718024	0	+	0.45	(0.44,0.476]	chr2	83352	80	INTRON	INTRON	ZNF512	ENSG00000243943.10	ENST00000413371.6:ENST00000416005.6:ENST00000556601.5:ENST00000379717.5:ENST00000355467.6:ENST00000494548.1:ENST00000461705.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	12	103	2	1.68502	1.821225	1.95743	0.0115528	0.00839972	0.0962115	0.0775646
chr5	54371564	54371664	2354338	0	+	0.45	(0.44,0.476]	chr5	227061	309	INTRON	INTRON	LINC01033	ENSG00000249069.8	ENST00000665899.1:ENST00000653566.1:ENST00000655801.1:ENST00000654906.1:ENST00000667636.1:ENST00000665869.1:ENST00000664079.1:ENST00000659703.1:ENST00000662351.1:ENST00000523194.7:ENST00000665795.1:ENST00000667992.1:ENST00000662022.1:ENST00000657771.1:ENST00000517934.1	lncRNA	lncRNA	lncRNA	lncRNA	10	86	2	1.41577	1.8211400000000002	2.22651	0.042743	0.00376161	0.148082	0.0562562
chr11	86060762	86060862	5014760	0	-	0.31	(0.28,0.32]	chr11	473022	288	INTRON	INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000630913.2:ENST00000528398.5:ENST00000356360.9:ENST00000534412.5:ENST00000531558.1:ENST00000531930.5:ENST00000532041.5:ENST00000525162.5:ENST00000528256.1:ENST00000528411.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	74	2	1.63236	1.8211249999999999	2.00989	0.0427801	0.0273014	0.148082	0.136494
chr14	69767939	69767987	5777166	0	+	0.541667	(0.515,0.57]	chr14	547344	1	UTR5	UTR5:EXON_MRNA:SS3_PROX:INTRON	SRSF5	ENSG00000100650.16	ENST00000553521.5:ENST00000554465.5:ENST00000394366.6:ENST00000553369.5:ENST00000553548.5:ENST00000557435.1:ENST00000557154.6:ENST00000553635.5:ENST00000556184.5:ENST00000557460.5:ENST00000556587.5:ENST00000555547.5:ENST00000556436.1:ENST00000555412.1:ENST00000554021.1:ENST00000555349.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	55	2	1.31383	1.8210950000000001	2.32836	0.0552039	0.0126662	0.165463	0.0982897
chr5	179622476	179622536	2779771	0	-	0.533333	(0.515,0.57]	chr5	262333	1	INTRON	INTRON	HNRNPH1	ENSG00000169045.17	ENST00000329433.11:ENST00000393432.9:ENST00000356731.9:ENST00000442819.6:ENST00000514332.5:ENST00000510411.5:ENST00000510678.5:ENST00000514731.5:ENST00000503105.5:ENST00000504779.6:ENST00000508103.5:ENST00000506721.5:ENST00000523137.5:ENST00000505811.5:ENST00000510431.5:ENST00000519056.5:ENST00000504348.5:ENST00000513225.5:ENST00000524180.5:ENST00000513972.5:ENST00000519707.5:ENST00000519455.5:ENST00000515158.5:ENST00000521116.5:ENST00000505087.1:ENST00000515714.5:ENST00000512273.5:ENST00000503664.1:ENST00000630639.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	14	103	2	1.67927	1.8210950000000001	1.96292	0.0157733	0.00221461	0.101453	0.0435144
chr7	107093184	107093283	3377653	0	+	0.363636	(0.35,0.378]	chr7	316252	9	INTRON	INTRON	PRKAR2B	ENSG00000005249.13	ENST00000265717.5:ENST00000393613.6:ENST00000488792.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	78	2	1.78162	1.821085	1.86055	0.0251606	0.0168498	0.12011	0.11068
chr10	30345988	30346086	4587614	0	-	0.387755	(0.378,0.408]	chr10	422990	40	INTRON	INTRON	MTPAP	ENSG00000107951.15	ENST00000263063.9:ENST00000488290.5:ENST00000417581.1:ENST00000421701.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	39	2	1.81685	1.8210250000000001	1.8252	0.0619563	0.0597868	0.189982	0.174514
chr11	94448731	94448830	5018105	0	-	0.383838	(0.378,0.408]	chr11	473357	9	INTRON	INTRON	MRE11	ENSG00000020922.13	ENST00000323929.8:ENST00000407439.7:ENST00000323977.7:ENST00000393241.8	protein_coding	protein_coding	protein_coding	protein_coding	4	39	2	1.81685	1.8210250000000001	1.8252	0.0619563	0.0597868	0.189982	0.174514
chr9	135952283	135952383	4372478	0	-	0.43	(0.408,0.44]	chr9	402541	40	INTRON	INTRON	UBAC1	ENSG00000130560.9	ENST00000371756.4:ENST00000478485.1:ENST00000486258.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	111	2	1.7906	1.82101	1.85142	0.0127811	0.00570519	0.0926667	0.0681157
chr8	54014369	54014468	3953229	0	-	0.454545	(0.44,0.476]	chr8	362572	35	INTRON	INTRON	TCEA1	ENSG00000187735.15	ENST00000396401.7:ENST00000521604.7:ENST00000521086.6:ENST00000522635.5:ENST00000522397.5:ENST00000640382.1:ENST00000640041.1:ENST00000520534.5:ENST00000518310.5:ENST00000517351.5:ENST00000521836.1:ENST00000518784.5:ENST00000519704.1:ENST00000638322.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	70	2	1.71574	1.820975	1.92621	0.045256	0.00813281	0.149888	0.0810802
chr16	21443598	21443697	6460751	0	-	0.50505	(0.476,0.515]	chr16	623226	30	INTRON	INTRON	NPIPB3	ENSG00000169246.16	ENST00000545358.5:ENST00000543368.1:ENST00000544154.1	protein_coding	retained_intron	protein_coding	retained_intron:processed_transcript	21	178	2	1.61974	1.820945	2.02215	0.00630166	0.00191654	0.0722266	0.0395738
chr18	732433	732533	6939893	0	-	0.29	(0.28,0.32]	chr18	686456	2	SS5_PROX	SS5_PROX:INTRON	YES1	ENSG00000176105.14	ENST00000584307.5:ENST00000314574.5:ENST00000577961.5	protein_coding	protein_coding	protein_coding	protein_coding	7	77	2	1.45235	1.820925	2.1895	0.0543728	0.0227063	0.164972	0.124921
chr21	9109794	9109894	7426437	0	-	0.35	(0.32,0.35]	chr21	757579	215	INTRON	INTRON	TEKT4P2	ENSG00000188681.12	ENST00000690061.1:ENST00000689141.1:ENST00000688310.1:ENST00000687537.1:ENST00000690096.1:ENST00000687888.1:ENST00000690389.1:ENST00000684989.1:ENST00000416067.6:ENST00000693307.1:ENST00000692383.1:ENST00000685666.1:ENST00000688451.1:ENST00000691190.1:ENST00000685532.1:ENST00000687488.1:ENST00000690713.1:ENST00000691834.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	9	97	2	1.42176	1.8208199999999999	2.21988	0.0511006	0.00573083	0.176696	0.0657377
chr14	101875930	101876030	5819655	0	+	0.4	(0.378,0.408]	chr14	551879	187	INTRON	INTRON	PPP2R5C	ENSG00000078304.20	ENST00000694906.1:ENST00000422945.6:ENST00000328724.9:ENST00000350249.7:ENST00000557621.5:ENST00000556307.5:ENST00000553730.5:ENST00000334743.9:ENST00000445439.7:ENST00000557095.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	47	2	1.53052	1.820775	2.11103	0.0744544	0.0266911	0.192012	0.134419
chr6	124967699	124967799	2951524	0	+	0.27	[0,0.28]	chr6	277668	39	INTRON	INTRON	RNF217	ENSG00000146373.17	ENST00000521654.7:ENST00000560949.5:ENST00000519971.1:ENST00000519565.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	10	129	2	1.51089	1.8207499999999999	2.13061	0.0339857	0.0106411	0.146815	0.0861859
chr9	131206094	131206193	4216463	0	+	0.292929	(0.28,0.32]	chr9	386673	40	INTRON	INTRON	NUP214	ENSG00000126883.19	ENST00000695497.1:ENST00000695498.1:ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000524578.6:ENST00000453861.6:ENST00000483497.6:ENST00000695500.1:ENST00000650694.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	32	350	2	1.78723	1.820735	1.85424	0.00367151	0.00207155	0.0535094	0.0422518
chr1	51455335	51455435	453707	0	-	0.52	(0.515,0.57]	chr1	54395	68	INTRON	INTRON	EPS15	ENSG00000085832.17	ENST00000371733.8:ENST00000371730.6	protein_coding	protein_coding	protein_coding	protein_coding	10	75	2	1.3492	1.8207149999999999	2.29223	0.0480671	0.00290031	0.171405	0.047789
chr16	89546057	89546157	6420741	0	+	0.54	(0.515,0.57]	chr16	616274	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SPG7	ENSG00000197912.16	ENST00000647079.1:ENST00000646303.1:ENST00000643649.1:ENST00000644498.1:ENST00000645897.1:ENST00000643668.1:ENST00000644225.1:ENST00000645818.2:ENST00000645977.1:ENST00000645063.1:ENST00000646263.1:ENST00000643724.1:ENST00000644781.1:ENST00000644901.1:ENST00000645042.1:ENST00000646531.1:ENST00000646930.1:ENST00000644210.1:ENST00000646589.1:ENST00000268704.7:ENST00000646826.1:ENST00000646716.1:ENST00000643345.1:ENST00000646958.1:ENST00000643105.1:ENST00000645354.1:ENST00000642334.1:ENST00000647227.1:ENST00000646445.1:ENST00000643954.1:ENST00000646399.1:ENST00000644671.1:ENST00000644748.1:ENST00000643496.1:ENST00000647032.1:ENST00000644751.1:ENST00000642427.1:ENST00000643370.1:ENST00000645886.1:ENST00000646454.1:ENST00000561945.2:ENST00000644171.1:ENST00000566682.2:ENST00000645258.1:ENST00000642263.1:ENST00000644556.1:ENST00000645842.1:ENST00000643734.1:ENST00000642814.1:ENST00000644061.1:ENST00000643350.1:ENST00000645392.1:ENST00000647302.1:ENST00000644930.1:ENST00000647123.1:ENST00000643409.1:ENST00000642226.1:ENST00000646005.1:ENST00000642984.1:ENST00000647491.1:ENST00000645952.1:ENST00000645944.1:ENST00000646543.1:ENST00000569820.6:ENST00000566221.5:ENST00000645742.1:ENST00000563218.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	64	2	1.39706	1.8206950000000002	2.24433	0.041152	0.00725078	0.161534	0.072984
chr7	140470188	140470288	3661534	0	-	0.47	(0.44,0.476]	chr7	339916	96	INTRON	INTRON	MKRN1	ENSG00000133606.11	ENST00000255977.7:ENST00000475010.5:ENST00000495305.5:ENST00000474576.5:ENST00000480552.5:ENST00000496169.5:ENST00000443720.6:ENST00000471104.5:ENST00000467513.5:ENST00000494939.1:ENST00000498535.1:ENST00000473444.1:ENST00000475180.5:ENST00000481705.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	13	115	2	1.44767	1.82067	2.19367	0.0386573	0.00104281	0.142788	0.0296876
chr16	70256934	70257033	6510147	0	-	0.525253	(0.515,0.57]	chr16	630524	12	EXON_MRNA	EXON_MRNA:INTRON	AARS1	ENSG00000090861.17	ENST00000674963.1:ENST00000675643.1:ENST00000675917.1:ENST00000674691.1:ENST00000261772.13:ENST00000675569.1:ENST00000676209.1:ENST00000676211.1:ENST00000676040.1:ENST00000675953.1:ENST00000675691.1:ENST00000676004.1:ENST00000675270.1:ENST00000675403.1:ENST00000676212.1:ENST00000675045.1:ENST00000675035.1:ENST00000676168.1:ENST00000674652.1:ENST00000675133.1:ENST00000675120.1:ENST00000674811.1:ENST00000674512.1:ENST00000675853.1:ENST00000565361.3:ENST00000676247.1:ENST00000674848.1:ENST00000674962.1:ENST00000675371.1:ENST00000675986.1:ENST00000674768.1:ENST00000675297.1:ENST00000675751.1:ENST00000564359.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	14	100	2	1.08559	1.82062	2.55565	0.0723567	3.23259e-4	0.187933	0.0159645
chr16	30289757	30289851	6472906	0	-	0.510638	(0.476,0.515]	chr16	625663	6	INTRON	INTRON	SMG1P5	ENSG00000183604.15	ENST00000529428.5:ENST00000411546.4:ENST00000691460.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	5	45	2	1.72558	1.820415	1.91525	0.0767648	0.0232571	0.196164	0.127416
chr2	74158108	74158204	1156919	0	-	0.510417	(0.476,0.515]	chr2	123696	11	INTRON	INTRON	MOB1A	ENSG00000114978.18	ENST00000396049.5	protein_coding	protein_coding	protein_coding	protein_coding	5	45	2	1.72558	1.820415	1.91525	0.0767648	0.0232571	0.196164	0.127416
chr13	20851645	20851744	5555831	0	-	0.444444	(0.44,0.476]	chr13	531006	74	INTRON	INTRON	XPO4	ENSG00000132953.18	ENST00000255305.11	protein_coding	protein_coding	protein_coding	protein_coding	11	97	2	1.78386	1.8204099999999999	1.85696	0.0118461	0.0107727	0.0920575	0.0899583
chr16	21519727	21519827	6461554	0	-	0.63	(0.57,1]	chr16	623385	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	SMG1P3	ENSG00000180747.15	ENST00000522841.6:ENST00000437413.2:ENST00000435197.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	17	74	2	1.79048	1.820115	1.84975	0.0064628	0.00207845	0.0699952	0.0423769
chr2	171127055	171127155	1263761	0	-	0.46	(0.44,0.476]	chr2	133921	88	INTRON	INTRON	TLK1	ENSG00000198586.14	ENST00000431350.7:ENST00000360843.7:ENST00000359766.7:ENST00000521943.5:ENST00000409443.6:ENST00000413010.5:ENST00000470340.1:ENST00000466220.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	53	2	1.56252	1.8200599999999998	2.0776	0.0465207	0.0292951	0.151387	0.141862
chr17	16043970	16044069	6733460	0	-	0.50505	(0.476,0.515]	chr17	660500	31	INTRON	INTRON	NCOR1	ENSG00000141027.22	ENST00000268712.8:ENST00000395851.5:ENST00000470782.5:ENST00000464381.5:ENST00000395849.6:ENST00000579573.2:ENST00000580554.1:ENST00000579606.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	51	2	1.58842	1.8199800000000002	2.05154	0.0406588	0.0336015	0.161534	0.134145
chr1	6594495	6594592	368165	0	-	0.474227	(0.44,0.476]	chr1	43248	5	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	KLHL21	ENSG00000162413.17	ENST00000377663.3:ENST00000377658.8:ENST00000467612.5:ENST00000496707.5:ENST00000463043.1	protein_coding	protein_coding	protein_coding	protein_coding	8	72	2	1.70242	1.819775	1.93713	0.0282713	0.0138947	0.137721	0.0955491
chr16	85582736	85582836	6415659	0	+	0.6	(0.57,1]	chr16	615470	260	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	10	45	2	1.80424	1.8197450000000002	1.83525	0.0129439	0.0110377	0.0991015	0.0873897
chr12	93437851	93437951	5388198	0	-	0.39	(0.378,0.408]	chr12	513727	131	INTRON	INTRON	UBE2N	ENSG00000177889.10	ENST00000318066.7:ENST00000550657.1:ENST00000549833.1:ENST00000549490.1:ENST00000552442.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	49	2	1.81685	1.819715	1.82258	0.0597868	0.0341279	0.189982	0.135102
chr15	40746738	40746836	6151275	0	-	0.408163	(0.378,0.408]	chr15	585127	11	INTRON	INTRON	RMDN3	ENSG00000137824.16	ENST00000260385.10:ENST00000338376.8:ENST00000558777.5:ENST00000558560.1:ENST00000560460.5:ENST00000558364.1:ENST00000560905.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	49	2	1.81685	1.819715	1.82258	0.0597868	0.0341279	0.189982	0.135102
chr7	131418987	131419087	3417361	0	+	0.34	(0.32,0.35]	chr7	319231	39	INTRON	INTRON	MKLN1	ENSG00000128585.18	ENST00000421797.6:ENST00000352689.11:ENST00000494785.5:ENST00000458153.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	123	2	1.61334	1.81962	2.0259	0.0322135	0.00288146	0.132553	0.0494641
chr1	1394426	1394519	359865	0	-	0.451613	(0.44,0.476]	chr1	41791	6	INTRON	INTRON	CCNL2	ENSG00000221978.13	ENST00000400809.8:ENST00000482621.5:ENST00000496007.5:ENST00000481223.6:ENST00000488340.5:ENST00000471930.5:ENST00000408918.8:ENST00000473872.5:ENST00000425598.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	89	2	1.38203	1.8195350000000001	2.25704	0.058781	0.0018274	0.167915	0.0396683
chr16	75019866	75019966	6389627	0	+	0.56	(0.515,0.57]	chr16	614482	171	INTRON	INTRON	ZNRF1	ENSG00000186187.12	ENST00000335325.9:ENST00000320619.10:ENST00000567962.5:ENST00000566250.5:ENST00000564320.1:ENST00000568511.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	46	2	1.69407	1.8195000000000001	1.94493	0.0459452	0.0204583	0.149888	0.122204
chr6	7154787	7154886	2798835	0	+	0.474747	(0.44,0.476]	chr6	263733	136	INTRON	INTRON	RREB1	ENSG00000124782.21	ENST00000379933.7:ENST00000491191.5:ENST00000471433.5:ENST00000379938.7:ENST00000467782.5:ENST00000349384.10:ENST00000334984.10:ENST00000475946.5:ENST00000483150.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	52	2	1.42812	1.819455	2.21079	0.0673866	0.0194581	0.183355	0.119831
chr3	47834608	47834707	1420295	0	+	0.545455	(0.515,0.57]	chr3	149238	36	INTRON	INTRON	DHX30	ENSG00000132153.15	ENST00000395745.6:ENST00000445061.6:ENST00000441384.5:ENST00000348968.8:ENST00000446256.6:ENST00000619982.4:ENST00000457607.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	54	2	1.81744	1.81943	1.82142	0.031028	0.0191173	0.143457	0.108861
chr7	140453427	140453526	3661354	0	-	0.424242	(0.408,0.44]	chr7	339884	5	UTR3	UTR3:EXON_MRNA	MKRN1	ENSG00000133606.11	ENST00000255977.7:ENST00000475010.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	18	155	2	1.71245	1.819325	1.9262	0.0099473	0.00187274	0.0841074	0.0401006
chr16	24552894	24552992	6327790	0	+	0.418367	(0.408,0.44]	chr16	605836	36	INTRON	INTRON	RBBP6	ENSG00000122257.20	ENST00000564314.5:ENST00000567686.5:ENST00000568015.5:ENST00000319715.10:ENST00000381039.7:ENST00000646282.1:ENST00000348022.6	protein_coding	protein_coding	protein_coding	protein_coding	5	45	2	1.75791	1.8192650000000001	1.88062	0.0534548	0.0378795	0.162935	0.157034
chr2	73761524	73761610	1156170	0	-	0.430233	(0.408,0.44]	chr2	123596	4	EXON_MRNA	EXON_MRNA	ENSG00000280037	ENSG00000280037.1	ENST00000624373.1	TEC	TEC	TEC	TEC	5	45	2	1.75791	1.8192650000000001	1.88062	0.0534548	0.0378795	0.162935	0.157034
chr7	50726035	50726135	3531997	0	-	0.41	(0.408,0.44]	chr7	329483	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	GRB10	ENSG00000106070.20	ENST00000335866.7:ENST00000398812.6:ENST00000401949.6:ENST00000402578.5:ENST00000644769.1:ENST00000403097.6:ENST00000644879.1:ENST00000406641.5:ENST00000402497.6:ENST00000357271.9:ENST00000643299.1:ENST00000407526.6:ENST00000645075.2:ENST00000439044.7:ENST00000644716.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	45	2	1.75791	1.8192650000000001	1.88062	0.0534548	0.0378795	0.162935	0.157034
chr11	78394270	78394370	5000152	0	-	0.43	(0.408,0.44]	chr11	472472	298	INTRON	INTRON	GAB2	ENSG00000033327.13	ENST00000361507.5:ENST00000526030.1:ENST00000528886.5:ENST00000530915.1:ENST00000534823.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	45	2	1.69566	1.8191950000000001	1.94273	0.0456237	0.0453922	0.164236	0.149888
chr15	85089991	85090066	6090019	0	+	0.426667	(0.408,0.44]	chr15	579541	2	INTRON	INTRON	PDE8A	ENSG00000073417.15	ENST00000310298.8:ENST00000557957.5:ENST00000394553.6:ENST00000339708.9:ENST00000478717.5:ENST00000485596.5:ENST00000559742.5:ENST00000559086.5:ENST00000560789.5:ENST00000557819.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	45	2	1.69566	1.8191950000000001	1.94273	0.0456237	0.0453922	0.164236	0.149888
chr2	20289454	20289554	1076158	0	-	0.38	(0.378,0.408]	chr2	114976	56	INTRON	INTRON	PUM2	ENSG00000055917.16	ENST00000338086.9:ENST00000361078.7:ENST00000440577.5	protein_coding	protein_coding	protein_coding	protein_coding	10	92	2	1.56313	1.8191000000000002	2.07507	0.0474151	0.00284959	0.153019	0.0494641
chr20	62905461	62905554	7362236	0	-	0.537634	(0.515,0.57]	chr20	751177	6	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	DIDO1	ENSG00000101191.17	ENST00000266070.8:ENST00000395343.6:ENST00000395340.5:ENST00000370371.8:ENST00000370368.5:ENST00000354665.8:ENST00000370366.1	protein_coding	protein_coding	protein_coding	protein_coding	14	106	2	1.59358	1.8191000000000002	2.04462	0.0158706	0.00235401	0.109464	0.0436213
chr1	222490220	222490320	641390	0	-	0.32	(0.28,0.32]	chr1	75664	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	ENSG00000276997	ENSG00000276997.4	ENST00000613697.1:ENST00000619187.4:ENST00000620399.1	lncRNA	lncRNA	lncRNA	lncRNA	15	164	2	1.31906	1.819	2.31894	0.0439347	0.0011322700000000001	0.149396	0.0308465
chr1	1889563	1889663	362826	0	-	0.51	(0.476,0.515]	chr1	42311	495	INTRON	INTRON	GNB1	ENSG00000078369.18	ENST00000610897.4:ENST00000615252.4:ENST00000378609.9:ENST00000439272.6:ENST00000434686.6:ENST00000472614.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	14	116	2	1.36776	1.81895	2.27014	0.0305439	0.00172923	0.130975	0.0384338
chr1	11786016	11786115	378726	0	-	0.323232	(0.32,0.35]	chr1	44427	4	UTR3	UTR3:EXON_MRNA	MTHFR	ENSG00000177000.13	ENST00000376590.9:ENST00000376592.6:ENST00000376583.7:ENST00000376585.6	protein_coding	protein_coding	protein_coding	protein_coding	8	77	2	1.33306	1.8189099999999998	2.30476	0.0593533	0.0151817	0.168806	0.108535
chr16	70377157	70377256	6510835	0	-	0.454545	(0.44,0.476]	chr16	630648	13	UTR3	UTR3:EXON_MRNA	ST3GAL2	ENSG00000157350.13	ENST00000342907.3:ENST00000393640.8	protein_coding	protein_coding	protein_coding	protein_coding	26	227	2	1.53665	1.81887	2.10109	0.00736108	7.57871e-4	0.0766566	0.0252137
chr4	126587601	126587700	2236585	0	-	0.313131	(0.28,0.32]	chr4	219023	1221	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	7	77	2	1.76293	1.818835	1.87474	0.0766478	0.0115687	0.196164	0.0962115
chr2	171148650	171148750	1263977	0	-	0.54	(0.515,0.57]	chr2	133921	304	INTRON	INTRON	TLK1	ENSG00000198586.14	ENST00000431350.7:ENST00000360843.7:ENST00000359766.7:ENST00000521943.5:ENST00000409443.6:ENST00000413010.5:ENST00000470340.1:ENST00000466220.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	67	2	1.47702	1.818765	2.16051	0.0421022	0.0046825	0.148082	0.0631419
chr1	70157854	70157952	479410	0	-	0.459184	(0.44,0.476]	chr1	57637	17	INTRON	INTRON	LRRC40	ENSG00000066557.6	ENST00000370952.4	protein_coding	protein_coding	protein_coding	protein_coding	7	62	2	1.60467	1.818665	2.03266	0.0411383	0.0155853	0.1451	0.109411
chr16	85549168	85549268	6415322	0	+	0.44	(0.408,0.44]	chr16	615465	1899	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	7	65	2	1.75791	1.818615	1.87932	0.0378795	0.0172104	0.157034	0.104099
chr19	28530704	28530803	7166402	0	-	0.373737	(0.35,0.378]	chr19	724189	625	INTRON	INTRON	ENSG00000283403:ENSG00000267243	ENSG00000283403.1:ENSG00000267243.6	ENST00000592347.5:ENST00000593065.5	lncRNA	lncRNA	lncRNA	lncRNA	32	294	2	1.81675	1.818605	1.82046	0.00344514	0.00118656	0.0517761	0.031662
chr4	174284540	174284640	2082585	0	+	0.37	(0.35,0.378]	chr4	205798	4	SS5_PROX	SS5_PROX:INTRON	CEP44	ENSG00000164118.13	ENST00000505124.5:ENST00000457424.6:ENST00000396791.7:ENST00000503780.6:ENST00000514712.5:ENST00000515299.5:ENST00000503053.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	56	2	1.49446	1.8185500000000001	2.14264	0.054297	0.0274795	0.182243	0.123904
chr20	36592785	36592882	7266029	0	+	0.391753	(0.378,0.408]	chr20	738349	13	UTR3	UTR3:EXON_MRNA	TGIF2	ENSG00000118707.11	ENST00000373874.6:ENST00000373872.9:ENST00000611732.4	protein_coding	protein_coding	protein_coding	protein_coding	9	78	2	1.46092	1.8184999999999998	2.17608	0.0314415	0.0218783	0.13151	0.123836
chr20	32858072	32858169	7257492	0	+	0.329897	(0.32,0.35]	chr20	737286	16	EXON_LNCRNA	EXON_LNCRNA	ENSG00000260257	ENSG00000260257.2	ENST00000569087.2	lncRNA	lncRNA	lncRNA	lncRNA	5	53	2	1.55682	1.818335	2.07985	0.0724487	0.0303092	0.188101	0.143025
chr6	7126269	7126368	2798548	0	+	0.636364	(0.57,1]	chr6	263723	172	INTRON	INTRON	RREB1	ENSG00000124782.21	ENST00000379933.7:ENST00000491191.5:ENST00000471433.5:ENST00000379938.7:ENST00000467782.5:ENST00000349384.10:ENST00000334984.10:ENST00000475946.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	32	2	1.79898	1.818335	1.83769	0.0297587	0.0206524	0.12908	0.122348
chr11	47520757	47520857	4950077	0	-	0.52	(0.515,0.57]	chr11	464238	60	INTRON	INTRON	CELF1	ENSG00000149187.19	ENST00000310513.10:ENST00000687097.1:ENST00000531165.5:ENST00000532048.5:ENST00000530151.5:ENST00000525841.5:ENST00000528434.5:ENST00000543178.5:ENST00000526419.1:ENST00000528538.5:ENST00000526277.1	protein_coding	protein_coding	protein_coding	protein_coding	6	46	2	1.63184	1.81826	2.00468	0.0545832	0.0166344	0.165292	0.110511
chrX	18350191	18350291	7771014	0	-	0.52	(0.515,0.57]	chrX	794213	157	INTRON	INTRON	SCML2	ENSG00000102098.19	ENST00000251900.9	protein_coding	protein_coding	protein_coding	protein_coding	6	46	2	1.63184	1.81826	2.00468	0.0545832	0.0166344	0.165292	0.110511
chr1	246156269	246156368	677195	0	-	0.363636	(0.35,0.378]	chr1	79721	600	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000391836.3:ENST00000453676.5:ENST00000462422.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	59	2	1.6599	1.81818	1.97646	0.0545616	0.0193942	0.165292	0.119831
chr16	85501688	85501788	6414847	0	+	0.55	(0.515,0.57]	chr16	615465	1424	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	6	46	2	1.68687	1.81816	1.94945	0.0414068	0.0300837	0.161557	0.129186
chr20	35712418	35712518	7336241	0	-	0.39	(0.378,0.408]	chr20	747422	16	INTRON	INTRON	RBM39	ENSG00000131051.24	ENST00000253363.11:ENST00000639702.1:ENST00000656873.1:ENST00000463004.5:ENST00000361162.10:ENST00000461283.5:ENST00000403542.6:ENST00000338163.10:ENST00000528062.7:ENST00000429968.5:ENST00000444878.5:ENST00000665058.1:ENST00000476806.5:ENST00000495293.5:ENST00000492779.5:ENST00000465158.5:ENST00000448303.5:ENST00000470563.5:ENST00000615771.5:ENST00000471635.5:ENST00000475651.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	15	123	2	1.62557	1.81814	2.01071	0.0111045	0.00713896	0.0876025	0.0756118
chr3	37244316	37244413	1395761	0	+	0.453608	(0.44,0.476]	chr3	146301	3	INTRON	INTRON	GOLGA4	ENSG00000144674.17	ENST00000435830.6:ENST00000444882.5:ENST00000356847.8:ENST00000450863.6:ENST00000361924.7:ENST00000429018.5:ENST00000431105.1:ENST00000419177.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	22	185	2	1.73751	1.81804	1.89857	0.0088224	0.00111868	0.0792321	0.0307204
chr7	44882232	44882331	3528746	0	-	0.333333	(0.32,0.35]	chr7	329128	61	UTR3	UTR3:EXON_MRNA	PURB	ENSG00000146676.10	ENST00000395699.5	protein_coding	protein_coding	protein_coding	protein_coding	6	60	2	1.59364	1.8180049999999999	2.04237	0.0413426	0.0375542	0.161557	0.140222
chr3	48549863	48549960	1688848	0	-	0.453608	(0.44,0.476]	chr3	172577	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	PFKFB4	ENSG00000114268.12	ENST00000232375.8:ENST00000490115.5:ENST00000383734.6:ENST00000416568.5:ENST00000417753.5:ENST00000445633.5:ENST00000452531.5:ENST00000468162.5:ENST00000412035.5:ENST00000471890.6:ENST00000496767.5:ENST00000422701.1:ENST00000490404.5:ENST00000467176.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	63	2	1.49801	1.8178999999999998	2.13779	0.0300375	0.0264596	0.142135	0.122506
chr10	102111836	102111936	4681255	0	-	0.52	(0.515,0.57]	chr10	432129	3	SS3_PROX	SS3_PROX:INTRON	LDB1	ENSG00000198728.11	ENST00000673968.1:ENST00000425280.2:ENST00000361198.9	protein_coding	protein_coding	protein_coding	protein_coding	5	34	2	1.5060500000000001	1.8178800000000002	2.12971	0.0757903	0.0511812	0.194427	0.176696
chr21	43965609	43965706	7414804	0	+	0.494845	(0.476,0.515]	chr21	755742	8	EXON_MRNA	EXON_MRNA:INTRON	AGPAT3	ENSG00000160216.21	ENST00000291572.13:ENST00000448287.5:ENST00000398061.5:ENST00000327505.6:ENST00000445582.5:ENST00000398063.6:ENST00000398058.5:ENST00000457068.5:ENST00000422850.5:ENST00000546158.1:ENST00000479117.5:ENST00000481319.1:ENST00000467358.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	37	2	1.79693	1.8178649999999998	1.8388	0.0649782	0.0564473	0.184423	0.179417
chr3	53251762	53251861	1704395	0	-	0.494949	(0.476,0.515]	chr3	175604	78	INTRON	INTRON	TKT	ENSG00000163931.17	ENST00000462138.6:ENST00000423525.6:ENST00000423516.5:ENST00000450814.6:ENST00000469678.1:ENST00000472528.5:ENST00000483706.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	37	2	1.79693	1.8178649999999998	1.8388	0.0649782	0.0564473	0.184423	0.179417
chrX	101098275	101098363	7694128	0	+	0.488636	(0.476,0.515]	chrX	787321	2	UTR5	UTR5:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CENPI	ENSG00000102384.14	ENST00000684367.1:ENST00000423383.3:ENST00000682095.1:ENST00000682304.1:ENST00000403304.6:ENST00000435570.1	protein_coding	protein_coding	protein_coding	protein_coding	4	37	2	1.79693	1.8178649999999998	1.8388	0.0649782	0.0564473	0.184423	0.179417
chr9	92293440	92293522	4287350	0	-	0.451219	(0.44,0.476]	chr9	394281	1	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	IARS1	ENSG00000196305.19	ENST00000375643.7:ENST00000443024.7:ENST00000447699.7:ENST00000683537.1:ENST00000684726.1:ENST00000683192.1:ENST00000683565.1:ENST00000682756.1:ENST00000684542.1:ENST00000683793.1:ENST00000683817.1:ENST00000682141.1:ENST00000682893.1:ENST00000684557.1:ENST00000498025.2:ENST00000682156.1:ENST00000627121.3:ENST00000683469.1:ENST00000683495.1:ENST00000682578.1:ENST00000682533.1:ENST00000472894.2:ENST00000684757.1:ENST00000684445.1:ENST00000683376.1:ENST00000683679.1:ENST00000683119.1:ENST00000490438.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	16	121	2	1.40129	1.8177699999999999	2.23425	0.0166154	0.00441123	0.110511	0.0587529
chr16	85672737	85672836	6416590	0	+	0.424242	(0.408,0.44]	chr16	615569	3	UTR3	UTR3:EXON_MRNA	GSE1	ENSG00000131149.19	ENST00000405402.6:ENST00000253458.12:ENST00000393243.5:ENST00000412692.5:ENST00000469381.1:ENST00000438180.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	28	240	2	1.79008	1.81771	1.84534	0.00254657	0.00180546	0.0448643	0.0393203
chr4	70938025	70938124	1970862	0	+	0.383838	(0.378,0.408]	chr4	197571	351	INTRON	INTRON	MOB1B	ENSG00000173542.9	ENST00000502869.5:ENST00000509041.5:ENST00000309395.7:ENST00000396051.2:ENST00000511449.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	12	92	2	1.57641	1.81769	2.05897	0.0339294	0.0103338	0.134508	0.0895167
chr1	28508329	28508405	57194	0	+	0.315789	(0.28,0.32]	chr1	7384	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RCC1:SNHG3	ENSG00000180198.17:ENSG00000242125.3	ENST00000398958.6:ENST00000649185.1:ENST00000413987.1:ENST00000427469.5:ENST00000683442.1:ENST00000434290.6:ENST00000373833.10:ENST00000437681.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	131	1342	2	1.22545	1.81767	2.40989	0.0110383	7.26721e-5	0.0927576	0.00767614
chr12	54280822	54280871	5143368	0	+	0.489796	(0.476,0.515]	chr12	485527	1	EXON_MRNA	EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HNRNPA1	ENSG00000135486.19	ENST00000546500.5:ENST00000677385.1:ENST00000677210.1:ENST00000677375.1:ENST00000677249.1:ENST00000676725.1:ENST00000678418.1:ENST00000550482.2:ENST00000340913.11:ENST00000679101.1:ENST00000547566.5:ENST00000547708.5:ENST00000679228.1:ENST00000547870.2:ENST00000551702.5:ENST00000678365.1:ENST00000330752.12:ENST00000676794.1:ENST00000547276.5:ENST00000678919.1:ENST00000678690.1:ENST00000677220.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	93	2	1.34709	1.817605	2.28812	0.0408438	0.00344676	0.161534	0.0517761
chr7	6046508	6046579	3476115	0	-	0.295775	(0.28,0.32]	chr7	325215	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	EIF2AK1	ENSG00000086232.13	ENST00000199389.11:ENST00000495565.5:ENST00000474029.5:ENST00000431744.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	80	2	1.4144	1.817545	2.22069	0.042942	0.0243177	0.162255	0.12011
chr7	152409541	152409641	3681029	0	-	0.48	(0.476,0.515]	chr7	341660	505	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000682301.1:ENST00000452749.2:ENST00000680867.1:ENST00000683800.1:ENST00000684278.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	109	2	1.67675	1.817545	1.95834	0.00953323	0.00823447	0.0863913	0.0772968
chr7	157380871	157380969	3455754	0	+	0.540816	(0.515,0.57]	chr7	323103	29	EXON_MRNA	EXON_MRNA:INTRON	DNAJB6	ENSG00000105993.15	ENST00000441561.5:ENST00000429029.6:ENST00000262177.9:ENST00000417758.5:ENST00000459889.5:ENST00000443280.5:ENST00000441291.5:ENST00000412557.5:ENST00000634080.1:ENST00000468928.5:ENST00000465908.5:ENST00000487480.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	60	2	1.69407	1.8175050000000001	1.94094	0.0459452	0.00719628	0.149888	0.0756137
chr6	49609846	49609943	3105182	0	-	0.360825	(0.35,0.378]	chr6	290636	23	INTRON	INTRON	RHAG	ENSG00000112077.18	ENST00000371175.10:ENST00000646272.1:ENST00000646939.1:ENST00000646963.1	protein_coding	protein_coding	protein_coding	protein_coding	18	166	2	1.81287	1.817455	1.82204	0.00874368	0.00306233	0.0788605	0.0509893
chr6	17661779	17661879	3065752	0	-	0.26	[0,0.28]	chr6	284828	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NUP153	ENSG00000124789.12	ENST00000613258.4:ENST00000537253.5:ENST00000262077.3	protein_coding	protein_coding	protein_coding	protein_coding	7	92	2	1.60593	1.8174200000000003	2.02891	0.0433625	0.0236076	0.162255	0.118716
chr7	116246919	116247019	3382476	0	+	0.38	(0.378,0.408]	chr7	316854	119	INTRON	INTRON	TES	ENSG00000135269.18	ENST00000461440.5:ENST00000358204.9:ENST00000455989.1:ENST00000492891.5:ENST00000496871.1:ENST00000393481.6:ENST00000485009.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	60	2	1.63086	1.8174199999999998	2.00398	0.0393906	0.0252353	0.143072	0.133676
chr1	204535517	204535617	297613	0	+	0.45	(0.44,0.476]	chr1	34289	23	INTRON	INTRON	MDM4	ENSG00000198625.14	ENST00000367183.7:ENST00000391947.6:ENST00000454264.6:ENST00000612738.4:ENST00000614459.4:ENST00000616250.4:ENST00000367182.8:ENST00000463049.5:ENST00000470908.5:ENST00000471783.1:ENST00000367180.5:ENST00000507825.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	16	138	2	1.52722	1.8173949999999999	2.10757	0.0201407	0.00118276	0.109913	0.031662
chr4	32048589	32048689	1941934	0	+	0.42	(0.408,0.44]	chr4	194727	504	INTRON	INTRON	LINC02506	ENSG00000251129.3	ENST00000662669.1:ENST00000665582.2:ENST00000667252.2:ENST00000660373.2:ENST00000684849.1:ENST00000513211.2:ENST00000659613.1:ENST00000657576.1:ENST00000686730.1:ENST00000685407.1:ENST00000685455.1:ENST00000655951.1	lncRNA	lncRNA	lncRNA	lncRNA	14	121	2	1.70815	1.8173949999999999	1.92664	0.0159677	0.00298892	0.101453	0.0503738
chr1	86978839	86978939	154237	0	+	0.4	(0.378,0.408]	chr1	16969	34	INTRON	INTRON	HS2ST1	ENSG00000153936.18	ENST00000370550.10:ENST00000370551.8:ENST00000687893.1:ENST00000693745.1:ENST00000689904.1:ENST00000690674.1:ENST00000591456.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	67	2	1.78011	1.8173300000000001	1.85455	0.0356367	0.0192049	0.151629	0.108861
chr12	53027481	53027581	5141638	0	+	0.34	(0.32,0.35]	chr12	485022	3	SS3_PROX	SS3_PROX:INTRON	EIF4B	ENSG00000063046.18	ENST00000549077.5:ENST00000262056.14:ENST00000420463.7:ENST00000416762.7:ENST00000550704.5:ENST00000549481.5:ENST00000552490.5:ENST00000550390.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	64	2	1.78201	1.8173050000000002	1.8526	0.0365003	0.0332438	0.153759	0.134145
chr6	140171681	140171781	2968172	0	+	0.34	(0.32,0.35]	chr6	279015	226	INTRON	INTRON	ENSG00000288714	ENSG00000288714.1	ENST00000683950.1	lncRNA	lncRNA	lncRNA	lncRNA	6	64	2	1.78201	1.8173050000000002	1.8526	0.0365003	0.0332438	0.153759	0.134145
chr11	118438733	118438830	4872140	0	+	0.453608	(0.44,0.476]	chr11	454977	17	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	ENSG00000285827:KMT2A	ENSG00000285827.1:ENSG00000118058.24	ENST00000649464.1:ENST00000648261.1:ENST00000529852.3:ENST00000649666.2:ENST00000389506.10:ENST00000534358.8:ENST00000533790.3:ENST00000527869.7:ENST00000649690.2:ENST00000532204.6:ENST00000691053.1:ENST00000531904.6:ENST00000649699.1:ENST00000648029.1:ENST00000647638.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	79	2	1.66633	1.81719	1.96805	0.0243614	0.0109533	0.12011	0.0925675
chr9	111933688	111933787	4184834	0	+	0.353535	(0.35,0.378]	chr9	381737	8	UTR3	UTR3:EXON_MRNA	UGCG	ENSG00000148154.10	ENST00000374279.4	protein_coding	protein_coding	protein_coding	protein_coding	8	76	2	1.75081	1.81719	1.88357	0.0427459	0.0100866	0.148082	0.0884696
chr10	42804715	42804814	4428254	0	+	0.454545	(0.44,0.476]	chr10	408133	21	INTRON	INTRON	BMS1	ENSG00000165733.8	ENST00000374518.6	protein_coding	protein_coding	protein_coding	protein_coding	12	100	2	1.24699	1.8169849999999999	2.38698	0.0484245	0.00229045	0.172383	0.0427959
chr19	48382663	48382753	7198944	0	-	0.533333	(0.515,0.57]	chr19	729758	2	UTR3	UTR3:EXON_MRNA	KDELR1	ENSG00000105438.9	ENST00000330720.7:ENST00000597017.5	protein_coding	protein_coding	protein_coding	protein_coding	57	401	2	1.56867	1.81696	2.06525	0.00167088	1.84771e-4	0.0379265	0.0123515
chr1	8796979	8797078	373578	0	-	0.464646	(0.44,0.476]	chr1	43555	40	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000656437.1:ENST00000659924.1	protein_coding	protein_coding	protein_coding	protein_coding	10	81	2	1.24733	1.8168449999999998	2.38636	0.0561984	0.0047296	0.18407	0.0600445
chr9	137740775	137740875	4224710	0	+	0.38	(0.378,0.408]	chr9	388235	16	INTRON	INTRON	EHMT1	ENSG00000181090.21	ENST00000462484.5:ENST00000371394.6:ENST00000460843.6:ENST00000629335.2:ENST00000636027.1:ENST00000637161.1:ENST00000637261.1:ENST00000637977.1:ENST00000626066.2:ENST00000638071.1:ENST00000495657.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	55	2	1.52219	1.8166099999999998	2.11103	0.0531838	0.0266911	0.162538	0.134419
chr20	47292980	47293079	7348869	0	-	0.525253	(0.515,0.57]	chr20	749324	7	INTRON	INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000467200.6:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000468376.2:ENST00000435836.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	44	2	1.37301	1.8165650000000002	2.26012	0.0752392	0.0160033	0.193891	0.109464
chr20	47278567	47278665	7348720	0	-	0.438776	(0.408,0.44]	chr20	749294	14	INTRON	INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000467200.6:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000468376.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	79	2	1.81017	1.8164600000000002	1.82275	0.0217525	0.0123226	0.11491	0.097243
chr4	102806790	102806888	2213145	0	-	0.438776	(0.408,0.44]	chr4	216743	38	INTRON	INTRON	UBE2D3	ENSG00000109332.20	ENST00000453744.7:ENST00000394804.6:ENST00000618836.4:ENST00000394803.9:ENST00000394801.8:ENST00000343106.9:ENST00000508474.5:ENST00000503742.5:ENST00000321805.11:ENST00000350435.11:ENST00000338145.7:ENST00000349311.12:ENST00000504211.5:ENST00000357194.10:ENST00000505207.5:ENST00000507845.5:ENST00000502404.5:ENST00000508635.5:ENST00000505307.5:ENST00000510129.5:ENST00000508476.5:ENST00000502563.5:ENST00000508238.5:ENST00000514755.5:ENST00000508974.5:ENST00000502690.5:ENST00000510599.5:ENST00000508818.5:ENST00000503418.5:ENST00000508249.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	45	2	1.6306	1.81644	2.00228	0.0544158	0.0389732	0.182272	0.143072
chr1	25469559	25469659	48339	0	+	0.32	(0.28,0.32]	chr1	5949	103	INTRON	INTRON	MACO1	ENSG00000204178.11	ENST00000399766.7:ENST00000374343.5:ENST00000647928.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	101	2	1.7305	1.8164349999999998	1.90237	0.0327022	0.0104138	0.133816	0.0901622
chr3	177024702	177024802	1870674	0	-	0.27	[0,0.28]	chr3	187269	55	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	TBL1XR1	ENSG00000177565.18	ENST00000636864.1:ENST00000457928.7:ENST00000430069.5:ENST00000637659.1:ENST00000474363.1:ENST00000673974.1:ENST00000631253.2:ENST00000352800.10	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	33	375	2	1.47089	1.8164250000000002	2.16196	0.00888066	0.00249363	0.0849778	0.0446195
chr1	28506719	28506811	57174	0	+	0.423913	(0.408,0.44]	chr1	7378	5	EXON_MRNA	EXON_MRNA:INTRON	RCC1:SNHG3	ENSG00000180198.17:ENSG00000242125.3	ENST00000398958.6:ENST00000649185.1:ENST00000413987.1:ENST00000427469.5:ENST00000683442.1:ENST00000447507.1:ENST00000434290.6:ENST00000373833.10:ENST00000437681.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	160	1381	2	1.73265	1.8164150000000001	1.90018	7.3928e-4	1.52964e-4	0.0249744	0.0106621
chr4	67473175	67473268	2152772	0	-	0.505376	(0.476,0.515]	chr4	211907	1	INTRON	INTRON	CENPC	ENSG00000145241.11	ENST00000273853.11:ENST00000513216.5:ENST00000506882.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	89	2	1.70198	1.8162850000000001	1.93059	0.023762	0.00854639	0.118822	0.0836849
chr3	141881358	141881458	1526122	0	+	0.37	(0.35,0.378]	chr3	159005	34	INTRON	INTRON	ATP1B3	ENSG00000069849.11	ENST00000475483.5:ENST00000465172.5:ENST00000286371.8:ENST00000466678.5:ENST00000462082.1:ENST00000495216.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	86	2	1.78162	1.8162699999999998	1.85092	0.0251606	0.0114682	0.12011	0.0956037
chr2	15535141	15535238	1072900	0	-	0.43299	(0.408,0.44]	chr2	114447	1	INTRON	INTRON	NBAS	ENSG00000151779.13	ENST00000281513.10	protein_coding	protein_coding	protein_coding	protein_coding	8	69	2	1.70933	1.81626	1.92319	0.0247322	0.0189186	0.12011	0.118303
chr16	16566993	16567093	6311532	0	+	0.31	(0.28,0.32]	chr16	604098	670	INTRON	INTRON	ENSG00000260126	ENSG00000260126.2	ENST00000567465.2	lncRNA	lncRNA	lncRNA	lncRNA	11	126	2	1.8146	1.81623	1.81786	0.0142986	0.0137925	0.104025	0.0950154
chr9	112290657	112290756	4317529	0	-	0.282828	(0.28,0.32]	chr9	397072	143	INTRON	INTRON	PTBP3	ENSG00000119314.16	ENST00000334318.10:ENST00000458258.5:ENST00000374257.6:ENST00000374255.6:ENST00000343327.6:ENST00000487997.1:ENST00000210227.4:ENST00000450374.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	69	2	1.64432	1.81619	1.98806	0.0606133	0.0199553	0.171142	0.120668
chr5	157810501	157810599	2758162	0	-	0.418367	(0.408,0.44]	chr5	260279	3	INTRON	INTRON	CLINT1	ENSG00000113282.14	ENST00000523094.5:ENST00000411809.7:ENST00000530742.5:ENST00000523908.5	protein_coding	protein_coding	protein_coding	protein_coding	8	69	2	1.58622	1.816165	2.04611	0.0291748	0.016628	0.141552	0.102621
chr12	6497224	6497323	5069251	0	+	0.282828	(0.28,0.32]	chr12	478656	16	INTRON	INTRON	NCAPD2	ENSG00000010292.13	ENST00000541399.1:ENST00000539714.5:ENST00000382457.8:ENST00000539084.5:ENST00000315579.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	88	2	1.69688	1.81616	1.93544	0.0276828	0.0219684	0.123904	0.123836
chr20	47342456	47342556	7349369	0	-	0.52	(0.515,0.57]	chr20	749346	235	INTRON	INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000435836.5:ENST00000446894.5:ENST00000441977.1	protein_coding	protein_coding	protein_coding	protein_coding	15	114	2	1.62864	1.81616	2.00368	0.0137628	0.00213962	0.10247	0.0417866
chr7	2380474	2380564	3269904	0	+	0.611111	(0.57,1]	chr7	303877	4	UTR3	UTR3:EXON_MRNA	EIF3B	ENSG00000106263.19	ENST00000360876.9:ENST00000397011.2:ENST00000475415.5:ENST00000468611.5:ENST00000465670.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	21	83	2	1.15726	1.815965	2.47467	0.0308522	2.17796e-4	0.13151	0.0129418
chr7	65883153	65883253	3322976	0	+	0.54	(0.515,0.57]	chr7	309012	92	INTRON	INTRON	VKORC1L1	ENSG00000196715.7	ENST00000360768.5:ENST00000648187.1:ENST00000648179.1:ENST00000434382.2	protein_coding	protein_coding	protein_coding	protein_coding	7	53	2	1.68687	1.8159	1.94493	0.0300837	0.0204583	0.129186	0.122204
chr2	171027938	171028038	1262754	0	-	0.49	(0.476,0.515]	chr2	133838	2	SS5_PROX	SS5_PROX:INTRON	TLK1	ENSG00000198586.14	ENST00000431350.7:ENST00000360843.7:ENST00000359766.7:ENST00000521943.5:ENST00000434911.6:ENST00000409443.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	45	2	1.63838	1.8158949999999998	1.99341	0.0555021	0.037389	0.165463	0.155878
chr1	23304034	23304106	399174	0	-	0.375	(0.35,0.378]	chr1	47824	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	HNRNPR	ENSG00000125944.21	ENST00000464516.1:ENST00000641107.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	9	85	2	1.70607	1.815885	1.9257	0.0482819	0.00586705	0.153283	0.0690758
chr16	81449135	81449234	6405040	0	+	0.434343	(0.408,0.44]	chr16	615026	32	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8	protein_coding	protein_coding	protein_coding	protein_coding	7	62	2	1.7519	1.8158349999999999	1.87977	0.0282738	0.0239555	0.129259	0.125825
chr6	8080828	8080928	3054639	0	-	0.48	(0.476,0.515]	chr6	284122	4	INTRON	INTRON	EEF1E1	ENSG00000124802.12	ENST00000429723.6:ENST00000502429.5:ENST00000379715.10	protein_coding	protein_coding	protein_coding	protein_coding	6	51	2	1.63962	1.815795	1.99197	0.039572	0.0346854	0.148144	0.143072
chr1	114717201	114717298	528190	0	-	0.391753	(0.378,0.408]	chr1	62233	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	CSDE1	ENSG00000009307.17	ENST00000339438.10:ENST00000610726.5:ENST00000692719.1:ENST00000358528.9:ENST00000688211.1:ENST00000438362.7:ENST00000689217.1:ENST00000689989.1:ENST00000686025.1:ENST00000686781.1:ENST00000686123.1:ENST00000684913.1:ENST00000686235.1:ENST00000693467.1:ENST00000689732.1:ENST00000693644.1:ENST00000687759.1:ENST00000692044.1:ENST00000689885.1:ENST00000691403.1:ENST00000692629.1:ENST00000690013.1:ENST00000690420.1:ENST00000692950.1:ENST00000686667.1:ENST00000691032.1:ENST00000685676.1:ENST00000529046.6:ENST00000692672.1:ENST00000691377.1:ENST00000689631.1:ENST00000688611.1:ENST00000690207.1:ENST00000693311.1:ENST00000689510.1:ENST00000686581.1:ENST00000689727.1:ENST00000690784.1:ENST00000483030.2:ENST00000687548.1:ENST00000689573.1:ENST00000261443.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	17	158	2	1.51434	1.8157800000000002	2.11722	0.015731	0.0017437	0.109464	0.0375445
chr1	37983868	37983968	426473	0	-	0.36	(0.35,0.378]	chr1	51723	3	SS5_PROX	SS5_PROX:INTRON	SF3A3	ENSG00000183431.12	ENST00000373019.5:ENST00000489537.5:ENST00000461869.5:ENST00000470585.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	49	2	1.75561	1.815735	1.87586	0.0739399	0.0268864	0.190914	0.135275
chr5	134216487	134216587	2726596	0	-	0.4	(0.378,0.408]	chr5	256558	100	INTRON	INTRON	PPP2CA	ENSG00000113575.10	ENST00000481195.6:ENST00000522385.1:ENST00000523082.1:ENST00000231504.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	65	2	1.58349	1.815735	2.04798	0.0653091	0.00809949	0.180158	0.0808864
chr20	47229425	47229525	7348223	0	-	0.36	(0.35,0.378]	chr20	749254	3	SS5_PROX	SS5_PROX:INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000467200.6:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4	protein_coding	protein_coding	protein_coding	protein_coding	8	75	2	1.6756	1.8156949999999998	1.95579	0.0234538	0.0219737	0.123836	0.11867
chr4	126587101	126587201	2236580	0	-	0.44	(0.408,0.44]	chr4	219023	1216	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	12	104	2	1.59687	1.81569	2.03451	0.0164598	0.00626591	0.110142	0.0685243
chr7	129024956	129025056	3636281	0	-	0.38	(0.378,0.408]	chr7	338142	64	INTRON	INTRON	TNPO3	ENSG00000064419.14	ENST00000627585.2:ENST00000265388.10:ENST00000471234.5:ENST00000482320.5:ENST00000471166.1	protein_coding	protein_coding	protein_coding	protein_coding	6	56	2	1.63458	1.81568	1.99678	0.0573057	0.0177959	0.167723	0.113452
chr11	2957802	2957898	4891638	0	-	0.260417	[0,0.28]	chr11	458297	17	INTRON	INTRON	NAP1L4	ENSG00000205531.13	ENST00000620138.4:ENST00000380542.9:ENST00000526115.5:ENST00000492685.5:ENST00000528363.5:ENST00000483643.7:ENST00000528261.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	91	2	1.43498	1.81561	2.19624	0.0775714	0.0108335	0.196285	0.0920781
chr9	130774054	130774154	4214465	0	+	0.34	(0.32,0.35]	chr9	386427	592	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000393293.4	protein_coding	protein_coding	protein_coding	protein_coding	6	60	2	1.45026	1.81559	2.18092	0.0622478	0.0256608	0.194723	0.120491
chrX	41203632	41203729	7645285	0	+	0.28866000000000003	(0.28,0.32]	chrX	782403	20	INTRON	INTRON	USP9X	ENSG00000124486.14	ENST00000324545.9:ENST00000378308.7	protein_coding	protein_coding	protein_coding	protein_coding	14	150	2	1.72011	1.815505	1.9109	0.0130707	0.00787291	0.0934021	0.0793693
chr8	129524473	129524573	4060527	0	-	0.34	(0.32,0.35]	chr8	369648	139	INTRON	INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1:ENST00000676273.1:ENST00000667643.1:ENST00000668791.1:ENST00000663716.1:ENST00000663572.1:ENST00000676148.1:ENST00000667962.1:ENST00000674877.1:ENST00000675316.1:ENST00000674656.1:ENST00000446592.7:ENST00000667341.1:ENST00000675186.1:ENST00000652971.1:ENST00000661447.1:ENST00000674863.1:ENST00000675498.1:ENST00000675527.1:ENST00000676108.1:ENST00000657647.1:ENST00000675589.1:ENST00000675913.1:ENST00000675109.1:ENST00000671632.1:ENST00000671311.1:ENST00000676099.1:ENST00000660652.1:ENST00000675522.1:ENST00000675183.1:ENST00000658861.1:ENST00000663991.1:ENST00000675044.1:ENST00000675435.1:ENST00000674639.1:ENST00000676069.1:ENST00000675532.1:ENST00000674762.1:ENST00000523151.6:ENST00000675948.1:ENST00000665364.1:ENST00000657251.1:ENST00000675166.1:ENST00000674883.1:ENST00000675867.1:ENST00000674580.1:ENST00000675393.1:ENST00000520048.1:ENST00000674906.1:ENST00000676030.1:ENST00000670588.1:ENST00000675072.1:ENST00000664936.1:ENST00000652914.1:ENST00000657069.1	lncRNA	lncRNA	lncRNA	lncRNA	10	102	2	1.50457	1.81549	2.12641	0.0309203	0.00815266	0.143443	0.0766625
chr5	151810307	151810406	2522216	0	+	0.353535	(0.35,0.378]	chr5	241380	49	UTR3	UTR3:EXON_MRNA:INTRON	G3BP1	ENSG00000145907.16	ENST00000678964.1:ENST00000678925.1:ENST00000394123.7:ENST00000676978.1:ENST00000679289.1:ENST00000677493.1:ENST00000676644.1:ENST00000677757.1:ENST00000356245.8:ENST00000678646.1:ENST00000677381.1:ENST00000678904.1:ENST00000677923.1:ENST00000677323.1:ENST00000676715.1:ENST00000676734.1:ENST00000676878.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	49	2	1.58862	1.81543	2.04224	0.0615516	0.0363073	0.193423	0.138959
chr16	58541000	58541100	6495445	0	-	0.45	(0.44,0.476]	chr16	628457	1	SS5_PROX	SS5_PROX:INTRON	CNOT1	ENSG00000125107.19	ENST00000317147.10:ENST00000569240.5:ENST00000567188.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	86	2	1.50943	1.815395	2.12136	0.0316416	0.00591413	0.13151	0.0694038
chr20	2657569	2657659	7222261	0	+	0.455556	(0.44,0.476]	chr20	733856	3	UTR3	UTR3:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NOP56	ENSG00000101361.17	ENST00000651302.1:ENST00000329276.10:ENST00000612233.1:ENST00000467196.5:ENST00000616692.1:ENST00000415272.2:ENST00000492135.5:ENST00000466447.5:ENST00000462630.5:ENST00000467857.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	91	2	1.75023	1.815375	1.88052	0.0240995	0.00808369	0.129929	0.0766625
chr1	213191964	213192064	312117	0	+	0.48	(0.476,0.515]	chr1	35957	151	INTRON	INTRON	RPS6KC1	ENSG00000136643.12	ENST00000615329.4:ENST00000543354.5:ENST00000614059.4:ENST00000543470.5:ENST00000366960.8:ENST00000366959.4:ENST00000490299.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	86	2	1.45724	1.815355	2.17347	0.0231273	0.010447	0.126939	0.0855102
chr22	21419248	21419347	7481190	0	+	0.656566	(0.57,1]	chr22	763205	13	INTRON	INTRON	HIC2	ENSG00000169635.10	ENST00000407464.7	protein_coding	protein_coding	protein_coding	protein_coding	6	24	2	1.2666	1.815355	2.36411	0.0788045	0.0408868	0.198736	0.161534
chr21	22284305	22284405	7385211	0	+	0.39	(0.378,0.408]	chr21	752727	711	INTRON	INTRON	ENSG00000226043	ENSG00000226043.2	ENST00000667099.1:ENST00000654607.1:ENST00000444130.1	lncRNA	lncRNA	lncRNA	lncRNA	7	65	2	1.5653	1.815325	2.06535	0.043739	0.0159849	0.162255	0.101453
chr10	60785163	60785262	4435837	0	+	0.323232	(0.32,0.35]	chr10	409180	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CDK1	ENSG00000170312.17	ENST00000519078.6:ENST00000475504.6:ENST00000316629.8:ENST00000395284.8:ENST00000448257.6:ENST00000373809.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	12	95	2	1.1701	1.815185	2.46027	0.0518461	0.0108973	0.176696	0.0873034
chr12	91574343	91574443	5384960	0	-	0.32	(0.28,0.32]	chr12	513485	671	INTRON	INTRON	ENSG00000289605	ENSG00000289605.1	ENST00000685093.1	lncRNA	lncRNA	lncRNA	lncRNA	6	69	2	1.56134	1.8150899999999999	2.06884	0.0740624	0.0152581	0.191153	0.108569
chr4	73192313	73192413	2160161	0	-	0.29	(0.28,0.32]	chr4	212794	144	INTRON	INTRON	ANKRD17	ENSG00000132466.20	ENST00000358602.9:ENST00000558247.5:ENST00000330838.10:ENST00000509867.6:ENST00000561029.1:ENST00000559367.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	69	2	1.56134	1.8150899999999999	2.06884	0.0740624	0.0152581	0.191153	0.108569
chrX	71574593	71574693	7680388	0	+	0.34	(0.32,0.35]	chrX	786485	9	UTR3	UTR3:EXON_MRNA	OGT	ENSG00000147162.14	ENST00000373719.8:ENST00000488174.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	71	706	2	1.62231	1.8150849999999998	2.00786	0.00411426	1.7188e-4	0.0564981	0.0113614
chr8	31119955	31120050	3728816	0	+	0.294737	(0.28,0.32]	chr8	346636	1	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	WRN	ENSG00000165392.11	ENST00000650667.1:ENST00000298139.7:ENST00000521620.5:ENST00000520169.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	123	2	1.7825	1.815005	1.84751	0.0162455	0.0119176	0.101453	0.0962115
chr10	125065619	125065719	4713385	0	-	0.5	(0.476,0.515]	chr10	434897	261	INTRON	INTRON	CTBP2	ENSG00000175029.17	ENST00000337195.9:ENST00000411419.6:ENST00000494626.6:ENST00000531469.5:ENST00000460976.5:ENST00000476817.1:ENST00000530884.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	58	2	1.36967	1.8150049999999998	2.26034	0.0605132	0.0166235	0.171085	0.110511
chr13	20853336	20853435	5555848	0	-	0.464646	(0.44,0.476]	chr13	531006	91	INTRON	INTRON	XPO4	ENSG00000132953.18	ENST00000255305.11	protein_coding	protein_coding	protein_coding	protein_coding	6	54	2	1.49942	1.81467	2.12992	0.0792118	0.010975	0.199574	0.092635
chr8	140962210	140962310	4079686	0	-	0.45	(0.44,0.476]	chr8	370582	75	INTRON	INTRON	PTK2	ENSG00000169398.20	ENST00000696786.1:ENST00000522684.5:ENST00000395218.3:ENST00000521059.5:ENST00000519993.5:ENST00000340930.7:ENST00000524357.5:ENST00000521791.5:ENST00000523067.5:ENST00000520828.5:ENST00000519881.5:ENST00000520892.5:ENST00000523803.5:ENST00000521907.5:ENST00000517453.5:ENST00000520045.5:ENST00000521332.5:ENST00000524040.5:ENST00000523679.1:ENST00000524257.5:ENST00000523797.1:ENST00000519635.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	54	2	1.49942	1.81467	2.12992	0.0792118	0.010975	0.199574	0.092635
chr3	177142824	177142924	1871899	0	-	0.37	(0.35,0.378]	chr3	187422	67	INTRON	INTRON	TBL1XR1	ENSG00000177565.18	ENST00000457928.7:ENST00000430069.5:ENST00000673974.1:ENST00000352800.10:ENST00000422442.6:ENST00000428970.5:ENST00000424913.5:ENST00000437738.5:ENST00000431421.5:ENST00000635794.1:ENST00000630796.2:ENST00000450267.5:ENST00000630833.2:ENST00000431674.5:ENST00000422066.5:ENST00000443315.5:ENST00000627825.2:ENST00000427349.5:ENST00000413084.5:ENST00000637137.1:ENST00000491623.2:ENST00000637544.1:ENST00000636187.1:ENST00000636912.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	75	2	1.59904	1.814655	2.03027	0.0285976	0.0185322	0.139244	0.108861
chr5	79638155	79638254	2398989	0	+	0.393939	(0.378,0.408]	chr5	231707	143	INTRON	INTRON	TENT2	ENSG00000164329.14	ENST00000423041.6:ENST00000504233.5:ENST00000453514.6:ENST00000428308.6:ENST00000296783.7	protein_coding	protein_coding	protein_coding	protein_coding	9	78	2	1.42205	1.8145850000000001	2.20712	0.0390695	0.00978751	0.161228	0.0835427
chr16	70377748	70377847	6510841	0	-	0.464646	(0.44,0.476]	chr16	630648	19	UTR3	UTR3:EXON_MRNA	ST3GAL2	ENSG00000157350.13	ENST00000342907.3:ENST00000393640.8	protein_coding	protein_coding	protein_coding	protein_coding	7	63	2	1.69823	1.8145349999999998	1.93084	0.0443175	0.0218548	0.162302	0.11491
chr21	39248430	39248528	7464872	0	-	0.408163	(0.378,0.408]	chr21	760476	2	INTRON	INTRON	BRWD1	ENSG00000185658.14	ENST00000333229.6:ENST00000342449.8:ENST00000446924.5:ENST00000380800.7:ENST00000430093.5:ENST00000445245.5:ENST00000445668.5:ENST00000412604.1:ENST00000455867.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	95	2	1.35589	1.81449	2.27309	0.029051	0.00769587	0.141264	0.0754631
chr12	45843319	45843417	5123863	0	+	0.418367	(0.408,0.44]	chr12	483345	12	INTRON	INTRON	ARID2	ENSG00000189079.17	ENST00000334344.11:ENST00000422737.6:ENST00000479608.5:ENST00000444670.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	96	2	1.77749	1.8144550000000002	1.85142	0.0127811	0.0104439	0.0926667	0.0902734
chr4	70913742	70913842	1970619	0	+	0.34	(0.32,0.35]	chr4	197571	108	INTRON	INTRON	MOB1B	ENSG00000173542.9	ENST00000502869.5:ENST00000509041.5:ENST00000309395.7:ENST00000396051.2:ENST00000511449.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	9	80	2	1.44797	1.814445	2.18092	0.0304475	0.0256608	0.143385	0.120491
chr7	101918714	101918813	3367379	0	+	0.484848	(0.476,0.515]	chr7	315225	21	INTRON	INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000497815.5:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000558469.5:ENST00000560541.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	11	95	2	1.69758	1.81441	1.93124	0.0144542	0.00916342	0.105087	0.0812949
chr7	121245837	121245937	3396229	0	+	0.5	(0.476,0.515]	chr7	317793	11	INTRON	INTRON	CPED1	ENSG00000106034.18	ENST00000310396.10:ENST00000450913.6:ENST00000423795.5:ENST00000466055.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	95	2	1.69758	1.81441	1.93124	0.0144542	0.00916342	0.105087	0.0812949
chr10	71824196	71824296	4642561	0	-	0.59	(0.57,1]	chr10	427141	3	SS3_PROX	SS3_PROX:INTRON	PSAP	ENSG00000197746.15	ENST00000394936.8:ENST00000633965.1	protein_coding	protein_coding	protein_coding	protein_coding	6	28	2	1.63919	1.81436	1.98953	0.05421	0.0182848	0.164887	0.115629
chr12	68616150	68616250	5161257	0	+	0.59	(0.57,1]	chr12	488573	47	INTRON	INTRON	RAP1B	ENSG00000127314.18	ENST00000460800.5:ENST00000393436.9:ENST00000250559.14:ENST00000425247.6:ENST00000501412.2:ENST00000450214.6:ENST00000463493.5:ENST00000537460.5:ENST00000341355.9:ENST00000538283.5:ENST00000541167.5:ENST00000422358.6:ENST00000489473.6:ENST00000545270.5:ENST00000538980.5:ENST00000543393.5:ENST00000542018.5:ENST00000540209.5:ENST00000378985.7:ENST00000453560.6:ENST00000534899.5:ENST00000542145.5:ENST00000539091.5:ENST00000535492.5:ENST00000540781.5:ENST00000485252.6:ENST00000538877.5:ENST00000541386.5:ENST00000543697.5:ENST00000545720.6:ENST00000541216.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	28	2	1.63919	1.81436	1.98953	0.05421	0.0182848	0.164887	0.115629
chr2	8958942	8959042	1063120	0	-	0.44	(0.408,0.44]	chr2	113380	3	SS3_PROX	SS3_PROX:INTRON	MBOAT2	ENSG00000143797.12	ENST00000305997.8:ENST00000486484.5:ENST00000477073.5:ENST00000462696.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	10	81	2	1.39837	1.8143	2.23023	0.0342165	0.0087201	0.146942	0.0788605
chr7	119800315	119800415	3629343	0	-	0.35	(0.32,0.35]	chr7	337330	1	SS5_PROX	SS5_PROX:INTRON	LINC02476	ENSG00000225546.6	ENST00000660268.1:ENST00000431071.5:ENST00000426413.2	lncRNA	lncRNA	lncRNA	lncRNA	19	190	2	1.50112	1.8142550000000002	2.12739	0.0177101	0.00130642	0.105354	0.0333932
chr9	129046404	129046504	4208606	0	+	0.52	(0.515,0.57]	chr9	385478	35	INTRON	INTRON	MIGA2	ENSG00000148343.19	ENST00000474534.1:ENST00000684074.1:ENST00000439290.5:ENST00000445183.5:ENST00000358369.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	46	2	1.811	1.81422	1.81744	0.0325989	0.031028	0.143457	0.133687
chr20	49282318	49282416	7284644	0	+	0.489796	(0.476,0.515]	chr20	741065	1	INTRON	INTRON	ZFAS1	ENSG00000177410.13	ENST00000371743.8:ENST00000417721.5:ENST00000441722.5:ENST00000450535.5:ENST00000458653.5:ENST00000428008.6:ENST00000620594.2:ENST00000652916.1:ENST00000326677.9:ENST00000659056.1	lncRNA	lncRNA	lncRNA	lncRNA	22	206	2	1.51299	1.8141699999999998	2.11535	0.0156736	5.76559e-4	0.109464	0.0222754
chr17	67072617	67072716	6824060	0	-	0.616162	(0.57,1]	chr17	674357	23	UTR3	UTR3:EXON_MRNA	HELZ	ENSG00000198265.12	ENST00000358691.10	protein_coding	protein_coding	protein_coding	protein_coding	6	28	2	1.79063	1.81416	1.83769	0.0356001	0.0297587	0.15159	0.12908
chr11	3758292	3758392	4894770	0	-	0.34	(0.32,0.35]	chr11	458876	45	INTRON	INTRON	NUP98	ENSG00000110713.17	ENST00000359171.8:ENST00000324932.12:ENST00000650171.1:ENST00000355260.7:ENST00000397004.8:ENST00000397007.8:ENST00000527104.5:ENST00000529379.1:ENST00000397013.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	16	162	2	1.61942	1.8141150000000001	2.00881	0.0168104	0.00235992	0.10348	0.0445991
chr17	62040488	62040587	6810632	0	-	0.393939	(0.378,0.408]	chr17	672946	45	INTRON	INTRON	MED13	ENSG00000108510.10	ENST00000397786.7	protein_coding	protein_coding	protein_coding	protein_coding	13	90	2	1.23375	1.814095	2.39444	0.0359677	0.0122858	0.152355	0.091087
chr5	181315536	181315636	2563755	0	+	0.48	(0.476,0.515]	chr5	245359	3	SS3_PROX	SS3_PROX:INTRON	ENSG00000238035	ENSG00000238035.8	ENST00000499986.8	lncRNA	lncRNA	lncRNA	lncRNA	18	156	2	1.68099	1.8140800000000001	1.94717	0.00763432	0.00275551	0.0777284	0.0469265
chr7	878827	878925	3269131	0	+	0.510204	(0.476,0.515]	chr7	303674	1	INTRON	INTRON	SUN1:GET4	ENSG00000164828.18:ENSG00000239857.7	ENST00000457861.1:ENST00000265857.8:ENST00000412734.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	102	2	1.41176	1.8140749999999999	2.21639	0.0355057	0.00224357	0.137673	0.0435144
chr3	48526367	48526467	1688601	0	-	0.49	(0.476,0.515]	chr3	172531	3	INTRON	INTRON	PFKFB4	ENSG00000114268.12	ENST00000232375.8:ENST00000490115.5:ENST00000383734.6:ENST00000416568.5:ENST00000417753.5:ENST00000445633.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	62	2	1.71266	1.813955	1.91525	0.0293304	0.0232571	0.128055	0.127416
chr9	131223330	131223430	4216640	0	+	0.48	(0.476,0.515]	chr9	386684	4	SS5_PROX	SS5_PROX:INTRON	NUP214	ENSG00000126883.19	ENST00000695497.1:ENST00000695498.1:ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000524578.6:ENST00000453861.6:ENST00000483497.6:ENST00000695500.1:ENST00000650694.1:ENST00000695501.1:ENST00000530491.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	62	2	1.71266	1.813955	1.91525	0.0293304	0.0232571	0.128055	0.127416
chr12	122593892	122593988	5241301	0	+	0.291667	(0.28,0.32]	chr12	497803	6	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	KNTC1	ENSG00000184445.12	ENST00000450485.6:ENST00000333479.12:ENST00000535186.1:ENST00000423927.2:ENST00000545065.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	120	2	1.42209	1.813945	2.2058	0.0411131	0.00496409	0.1451	0.0646039
chr3	185924181	185924279	1886459	0	-	0.326531	(0.32,0.35]	chr3	188623	3	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	TRA2B	ENSG00000136527.19	ENST00000453386.7:ENST00000492417.5:ENST00000463328.5:ENST00000487615.5:ENST00000456380.5:ENST00000382191.4:ENST00000465245.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	84	2	1.38564	1.8139399999999999	2.24224	0.0793006	0.00393422	0.199711	0.0572563
chrX	73961740	73961838	7682274	0	+	0.387755	(0.378,0.408]	chrX	786628	28	INTRON	INTRON	JPX	ENSG00000225470.8	ENST00000664637.1:ENST00000639185.1:ENST00000655090.1:ENST00000640437.1:ENST00000660546.1:ENST00000667886.1:ENST00000660840.1:ENST00000657179.1:ENST00000670506.1:ENST00000657910.1:ENST00000662120.1:ENST00000671207.1:ENST00000659254.1:ENST00000656624.1:ENST00000667573.1:ENST00000660856.1:ENST00000660836.1:ENST00000668590.1:ENST00000658649.1:ENST00000414209.6:ENST00000654137.1:ENST00000670994.1:ENST00000653479.1:ENST00000602772.5:ENST00000655879.1:ENST00000657372.1:ENST00000657096.1:ENST00000602985.6:ENST00000670685.1:ENST00000670503.1:ENST00000663027.1:ENST00000654995.1:ENST00000602895.6:ENST00000654374.1:ENST00000660087.1:ENST00000665032.1:ENST00000671336.1:ENST00000671476.1:ENST00000667057.1:ENST00000670192.1:ENST00000670464.1:ENST00000665345.1:ENST00000661546.1:ENST00000662543.1:ENST00000602938.6:ENST00000664295.1:ENST00000654005.1:ENST00000669149.1:ENST00000659852.1:ENST00000656509.1:ENST00000602294.6:ENST00000667294.1:ENST00000663470.1:ENST00000602920.6:ENST00000671021.1:ENST00000659849.1:ENST00000667937.1:ENST00000661130.1:ENST00000654196.1:ENST00000655994.1:ENST00000659373.1:ENST00000662239.1:ENST00000670805.1:ENST00000656263.1:ENST00000653069.1:ENST00000657638.1:ENST00000653808.1:ENST00000653929.1:ENST00000653885.1:ENST00000659023.1:ENST00000602546.5:ENST00000659622.1:ENST00000671518.1:ENST00000670408.1	lncRNA	lncRNA	lncRNA	lncRNA	5	48	2	1.73164	1.813925	1.89621	0.0488044	0.0441773	0.173377	0.149888
chr1	51363270	51363365	452767	0	-	0.305263	(0.28,0.32]	chr1	54299	16	INTRON	INTRON	EPS15	ENSG00000085832.17	ENST00000371733.8:ENST00000371730.6	protein_coding	protein_coding	protein_coding	protein_coding	6	66	2	1.76061	1.813725	1.86684	0.0605813	0.0253826	0.171122	0.133676
chr2	241318644	241318744	1053634	0	+	0.27	[0,0.28]	chr2	112194	3	SS5_PROX	SS5_PROX:INTRON	SEPTIN2	ENSG00000168385.18	ENST00000391973.6:ENST00000428282.5:ENST00000492978.5:ENST00000360051.7:ENST00000407017.5:ENST00000445030.5:ENST00000428524.5:ENST00000469434.5:ENST00000616972.4:ENST00000495463.5:ENST00000482304.5:ENST00000475474.5:ENST00000401990.5:ENST00000469175.5:ENST00000407971.5:ENST00000461048.5:ENST00000457335.5:ENST00000436795.5:ENST00000494824.5:ENST00000411484.5:ENST00000462147.5:ENST00000434955.5:ENST00000466211.5:ENST00000391971.7:ENST00000402092.6:ENST00000484740.1:ENST00000473479.5:ENST00000464128.5:ENST00000441533.5:ENST00000467971.5:ENST00000425899.5:ENST00000443492.5:ENST00000437066.5:ENST00000429791.5:ENST00000420786.5:ENST00000475823.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	119	2	1.39834	1.813615	2.22889	0.0403476	0.0128832	0.161534	0.0926667
chr2	17749118	17749217	1074060	0	-	0.242424	[0,0.28]	chr2	114655	28	INTRON	INTRON	SMC6	ENSG00000163029.16	ENST00000351948.8:ENST00000448223.7:ENST00000402989.5:ENST00000446852.5:ENST00000621152.4:ENST00000428868.1	protein_coding	protein_coding	protein_coding	protein_coding	10	127	2	1.38585	1.813605	2.24136	0.058804	0.00497825	0.167915	0.0646039
chr3	33085826	33085926	1651053	0	-	0.47	(0.44,0.476]	chr3	169303	82	INTRON	INTRON	GLB1	ENSG00000170266.16	ENST00000399402.7:ENST00000307363.10:ENST00000307377.12:ENST00000482097.5:ENST00000485698.5:ENST00000498537.5:ENST00000415454.1:ENST00000438227.1:ENST00000440656.1:ENST00000464355.1:ENST00000450835.1:ENST00000436768.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	10	87	2	1.64563	1.813555	1.98148	0.0363922	0.00431586	0.138959	0.0599409
chr5	98927034	98927125	2684056	0	-	0.285714	(0.28,0.32]	chr5	253964	1	INTRON	INTRON	CHD1	ENSG00000153922.11	ENST00000614616.5	protein_coding	protein_coding	protein_coding	protein_coding	5	57	2	1.6633	1.81353	1.96376	0.0522231	0.0480066	0.177274	0.153019
chr7	152394951	152395051	3680883	0	-	0.29	(0.28,0.32]	chr7	341660	359	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000682301.1:ENST00000452749.2:ENST00000680867.1:ENST00000683800.1:ENST00000684278.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	57	2	1.6633	1.81353	1.96376	0.0522231	0.0480066	0.177274	0.153019
chr15	75885106	75885204	6065486	0	+	0.44898	(0.44,0.476]	chr15	577588	13	INTRON	INTRON	UBE2Q2	ENSG00000140367.12	ENST00000569423.5:ENST00000267938.9:ENST00000561723.5:ENST00000561851.5:ENST00000426727.6:ENST00000567921.1:ENST00000563966.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	51	2	1.43625	1.8135150000000002	2.19078	0.063142	0.0226089	0.197183	0.117489
chr12	111567480	111567580	5412914	0	-	0.47	(0.44,0.476]	chr12	516941	27	INTRON	INTRON	ATXN2	ENSG00000204842.18	ENST00000642389.2:ENST00000608853.5:ENST00000672613.1:ENST00000673436.1:ENST00000643669.2:ENST00000616825.4:ENST00000389153.10:ENST00000550104.5:ENST00000483311.6:ENST00000672335.1:ENST00000673557.1:ENST00000673283.1:ENST00000673449.1:ENST00000535949.5:ENST00000542287.6:ENST00000644883.1:ENST00000647305.1:ENST00000671792.1:ENST00000392645.6:ENST00000672105.1:ENST00000549455.1:ENST00000548492.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	13	119	2	1.57262	1.8134299999999999	2.05424	0.0230575	0.00281536	0.126603	0.0472217
chr5	111497415	111497513	2702643	0	-	0.377551	(0.35,0.378]	chr5	254388	15	UTR3	UTR3:EXON_MRNA	STARD4	ENSG00000164211.13	ENST00000296632.8:ENST00000512160.5	protein_coding	protein_coding	protein_coding	protein_coding	16	120	2	1.13441	1.8132949999999999	2.49218	0.0445231	0.00348124	0.162997	0.0521496
chr20	47280035	47280133	7348735	0	-	0.520408	(0.515,0.57]	chr20	749294	29	INTRON	INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000467200.6:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000468376.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	23	159	2	1.3399	1.8132300000000001	2.28656	0.0169728	3.59297e-4	0.104085	0.0169207
chr22	21811144	21811244	7560821	0	-	0.36	(0.35,0.378]	chr22	773388	29	INTRON	INTRON	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	9	86	2	1.40928	1.8130700000000002	2.21686	0.0566272	0.00414535	0.167395	0.0589266
chr20	35708392	35708492	7336196	0	-	0.27	[0,0.28]	chr20	747408	4	SS3_PROX	SS3_PROX:INTRON	RBM39	ENSG00000131051.24	ENST00000253363.11:ENST00000639702.1:ENST00000656873.1:ENST00000463004.5:ENST00000361162.10:ENST00000461283.5:ENST00000403542.6:ENST00000338163.10:ENST00000528062.7:ENST00000429968.5:ENST00000444878.5:ENST00000665058.1:ENST00000476806.5:ENST00000495293.5:ENST00000492779.5:ENST00000465158.5:ENST00000448303.5:ENST00000470563.5:ENST00000615771.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	14	173	2	1.76629	1.81301	1.85973	0.0181687	0.00763706	0.107604	0.0777547
chr2	10305238	10305337	691651	0	+	0.393939	(0.378,0.408]	chr2	81125	9	INTRON	INTRON	HPCAL1	ENSG00000115756.13	ENST00000423674.5:ENST00000307845.8:ENST00000381765.7	protein_coding	protein_coding	protein_coding	protein_coding	7	64	2	1.76	1.81299	1.86598	0.0300232	0.023484	0.129138	0.128531
chr9	72168356	72168456	4141455	0	+	0.4	(0.378,0.408]	chr9	377412	183	INTRON	INTRON	GDA	ENSG00000119125.17	ENST00000545168.5:ENST00000238018.8:ENST00000358399.8:ENST00000376986.5:ENST00000475764.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	64	2	1.76	1.81299	1.86598	0.0300232	0.023484	0.129138	0.128531
chrX	3864313	3864397	7747231	0	-	0.369048	(0.35,0.378]	chrX	793120	3	INTRON	INTRON	ENSG00000285756	ENSG00000285756.2	ENST00000648217.1:ENST00000650456.1:ENST00000657698.1:ENST00000661656.1:ENST00000661924.1:ENST00000669719.1:ENST00000655273.1:ENST00000456563.1:ENST00000650538.1	lncRNA	lncRNA	lncRNA	lncRNA	8	82	2	1.49446	1.812885	2.13131	0.054297	0.00741515	0.182243	0.0744307
chr12	132827606	132827659	5450213	0	-	0.433962	(0.408,0.44]	chr12	522124	1	UTR5	UTR5:EXON_MRNA:INTRON	GOLGA3:CHFR	ENSG00000090615.16:ENSG00000072609.18	ENST00000204726.9:ENST00000450791.8:ENST00000688114.1:ENST00000691696.1:ENST00000691636.1:ENST00000690897.1:ENST00000456883.7:ENST00000545875.4:ENST00000688251.1:ENST00000686751.1:ENST00000685580.1:ENST00000687165.1:ENST00000692384.1:ENST00000685120.1:ENST00000689813.1:ENST00000693112.1:ENST00000685450.1:ENST00000534967.2:ENST00000537317.2:ENST00000690178.1:ENST00000541341.5:ENST00000692289.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	12	92	2	1.39526	1.812745	2.23023	0.024791	0.0087201	0.131935	0.0788605
chr1	212053204	212053304	307516	0	+	0.31	(0.28,0.32]	chr1	35478	54	INTRON	INTRON	DTL	ENSG00000143476.18	ENST00000542077.5:ENST00000366991.5:ENST00000475419.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	69	2	1.72279	1.81264	1.90249	0.0496859	0.0261803	0.156383	0.133676
chr21	9110692	9110792	7426446	0	-	0.38	(0.378,0.408]	chr21	757579	224	INTRON	INTRON	TEKT4P2	ENSG00000188681.12	ENST00000690061.1:ENST00000689141.1:ENST00000688310.1:ENST00000687537.1:ENST00000690096.1:ENST00000687888.1:ENST00000690389.1:ENST00000684989.1:ENST00000416067.6:ENST00000693307.1:ENST00000692383.1:ENST00000685666.1:ENST00000688451.1:ENST00000691190.1:ENST00000685532.1:ENST00000687488.1:ENST00000690713.1:ENST00000691834.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	14	125	2	1.65294	1.81264	1.97234	0.0106624	0.00589072	0.0916795	0.067031
chr1	171500388	171500488	253363	0	+	0.4	(0.378,0.408]	chr1	30096	143	INTRON	INTRON	PRRC2C	ENSG00000117523.18	ENST00000647382.2:ENST00000367742.7:ENST00000476522.5:ENST00000338920.8:ENST00000467601.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	19	158	2	1.55287	1.8125499999999999	2.07223	0.00776407	0.00385645	0.0787356	0.0542786
chr16	54923447	54923546	6488477	0	-	0.292929	(0.28,0.32]	chr16	627574	71	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	CRNDE	ENSG00000245694.11	ENST00000613942.2:ENST00000661493.1:ENST00000668556.1:ENST00000660344.1:ENST00000502066.7:ENST00000559598.7:ENST00000688921.1:ENST00000501177.9:ENST00000661312.1:ENST00000689582.1:ENST00000558031.7:ENST00000689375.1:ENST00000691307.1:ENST00000657142.1:ENST00000557792.2:ENST00000559432.6:ENST00000655114.1:ENST00000560912.6:ENST00000558952.2	lncRNA	lncRNA	lncRNA	lncRNA	7	79	2	1.40698	1.8124799999999999	2.21798	0.0778529	0.00901091	0.196685	0.0851009
chr16	85597821	85597921	6415810	0	+	0.44	(0.408,0.44]	chr16	615470	411	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	9	81	2	1.49789	1.812395	2.1269	0.0390091	0.00691204	0.161009	0.0718189
chr16	23420114	23420212	6463751	0	-	0.377551	(0.35,0.378]	chr16	623765	9	INTRON	INTRON	COG7	ENSG00000168434.13	ENST00000307149.10	protein_coding	protein_coding	protein_coding	protein_coding	13	121	2	1.74668	1.812255	1.87783	0.0198631	0.00407585	0.109608	0.0580748
chr7	148836910	148837000	3670286	0	-	0.455556	(0.44,0.476]	chr7	340613	2	CDS	CDS:EXON_MRNA:INTRON	EZH2	ENSG00000106462.12	ENST00000683292.1:ENST00000320356.7:ENST00000492143.5:ENST00000478654.5:ENST00000350995.6:ENST00000460911.5:ENST00000683744.1:ENST00000682317.1:ENST00000682263.1:ENST00000684300.1:ENST00000476773.5:ENST00000483967.5:ENST00000498186.5:ENST00000483012.1:ENST00000682401.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	86	2	1.44103	1.812235	2.18344	0.0244867	0.0102102	0.131869	0.0850389
chr9	128229226	128229324	4203321	0	+	0.469388	(0.44,0.476]	chr9	384064	27	INTRON	INTRON	DNM1	ENSG00000106976.21	ENST00000372923.8:ENST00000341179.11:ENST00000475805.5:ENST00000393594.7:ENST00000628346.2:ENST00000486160.3:ENST00000627543.2:ENST00000627061.2:ENST00000634267.2:ENST00000637999.1:ENST00000441149.6:ENST00000482638.6:ENST00000637317.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	12	105	2	1.74385	1.812185	1.88052	0.0119796	0.00808369	0.0962115	0.0766625
chr17	22176041	22176141	6579424	0	+	0.45	(0.44,0.476]	chr17	639556	848	INTRON	INTRON	UBBP4	ENSG00000263563.7	ENST00000648259.1:ENST00000688301.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	10	86	2	1.20796	1.81212	2.41628	0.0783119	0.00156262	0.197588	0.0365263
chr7	158745607	158745706	3688961	0	-	0.323232	(0.32,0.35]	chr7	342335	15	INTRON	INTRON	ESYT2	ENSG00000117868.18	ENST00000251527.10:ENST00000275418.13:ENST00000652148.1	protein_coding	protein_coding	protein_coding	protein_coding	6	63	2	1.64769	1.812115	1.97654	0.0578603	0.0199113	0.167723	0.120668
chr1	167789620	167789720	248453	0	+	0.46	(0.44,0.476]	chr1	29523	18	UTR3	UTR3:EXON_MRNA	MPZL1	ENSG00000197965.12	ENST00000359523.7:ENST00000392121.7	protein_coding	protein_coding	protein_coding	protein_coding	11	95	2	1.47888	1.8121	2.14532	0.0349698	0.00311081	0.13747500000000001	0.0512673
chr11	62882153	62882241	4799601	0	+	0.488636	(0.476,0.515]	chr11	444819	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SLC3A2	ENSG00000168003.18	ENST00000680729.1:ENST00000680002.1:ENST00000681467.1:ENST00000377890.6:ENST00000538084.2:ENST00000681569.1:ENST00000680725.1:ENST00000377891.6:ENST00000377889.6:ENST00000681215.1:ENST00000535296.5:ENST00000680631.1:ENST00000544377.2:ENST00000680610.1:ENST00000680297.1:ENST00000680134.1:ENST00000681232.1:ENST00000681657.1:ENST00000541425.6:ENST00000679908.1:ENST00000681563.1:ENST00000338663.12:ENST00000680654.1:ENST00000681107.1:ENST00000541649.2:ENST00000538682.6:ENST00000536981.6:ENST00000539891.6:ENST00000679594.1:ENST00000535768.2:ENST00000537508.6:ENST00000537839.5:ENST00000546253.5:ENST00000457660.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	13	88	2	1.30691	1.8120850000000002	2.31726	0.0271627	0.015077	0.136428	0.0994339
chr19	1415873	1415940	6995178	0	+	0.58209	(0.57,1]	chr19	693172	3	EXON_LNCRNA	EXON_LNCRNA:INTRON	DAZAP1	ENSG00000071626.17	ENST00000336761.10:ENST00000233078.9:ENST00000592522.5:ENST00000586579.5:ENST00000587079.5:ENST00000592453.2:ENST00000590419.5:ENST00000587833.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	33	2	1.52865	1.812075	2.0955	0.0730445	0.00622614	0.189414	0.0718276
chr15	41280488	41280588	6004364	0	+	0.39	(0.378,0.408]	chr15	571237	12	UTR3	UTR3:EXON_MRNA	CHP1	ENSG00000187446.12	ENST00000334660.10	protein_coding	protein_coding	protein_coding	protein_coding	15	134	2	1.75854	1.81204	1.86554	0.0106517	0.00411556	0.0861859	0.0585811
chr21	31682104	31682203	7437306	0	-	0.454545	(0.44,0.476]	chr21	758598	94	INTRON	INTRON	SCAF4	ENSG00000156304.15	ENST00000286835.12:ENST00000399804.5:ENST00000434667.3	protein_coding	protein_coding	protein_coding	protein_coding	7	57	2	1.54104	1.8119049999999999	2.08277	0.0339289	0.0309998	0.146815	0.13151
chr1	35920701	35920801	71039	0	+	0.42	(0.408,0.44]	chr1	9124	11	UTR3	UTR3:EXON_MRNA	AGO1	ENSG00000092847.13	ENST00000373206.5:ENST00000373204.6:ENST00000674426.1:ENST00000674304.1	protein_coding	protein_coding	protein_coding	protein_coding	6	54	2	1.64062	1.81186	1.9831	0.0557275	0.018491	0.165463	0.116694
chr13	45361834	45361933	5480150	0	+	0.434343	(0.408,0.44]	chr13	525028	12	INTRON	INTRON	TPT1-AS1	ENSG00000170919.16	ENST00000517509.5:ENST00000658870.1:ENST00000653307.1:ENST00000661180.1:ENST00000655984.1:ENST00000654229.1:ENST00000519454.6:ENST00000412946.6:ENST00000665586.1:ENST00000520590.5:ENST00000521336.6:ENST00000655666.1:ENST00000669281.1:ENST00000520622.6:ENST00000657761.1:ENST00000668209.1:ENST00000659577.1:ENST00000523506.6:ENST00000661291.1:ENST00000655385.1:ENST00000652823.1:ENST00000524062.5:ENST00000655124.1:ENST00000662212.1:ENST00000522859.5:ENST00000664881.1:ENST00000669627.1:ENST00000520924.5:ENST00000521507.5:ENST00000523445.5:ENST00000520310.6:ENST00000667948.1:ENST00000668256.1:ENST00000654626.1:ENST00000660680.1:ENST00000665079.1:ENST00000662614.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	6	54	2	1.64062	1.81186	1.9831	0.0557275	0.018491	0.165463	0.116694
chr6	42744675	42744764	3095454	0	-	0.550562	(0.515,0.57]	chr6	289570	3	UTR3	UTR3:EXON_MRNA	TBCC	ENSG00000124659.7	ENST00000372876.2	protein_coding	protein_coding	protein_coding	protein_coding	10	68	2	1.43515	1.8118249999999998	2.1885	0.0254996	0.0202537	0.121364	0.12024
chr11	70305528	70305628	4820760	0	+	0.52	(0.515,0.57]	chr11	449385	211	INTRON	INTRON	PPFIA1	ENSG00000131626.19	ENST00000253925.12:ENST00000389547.7:ENST00000532504.5:ENST00000530746.1:ENST00000532024.1:ENST00000648755.1:ENST00000644155.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	38	2	1.67758	1.81174	1.9459	0.0471728	0.0429089	0.168737	0.148082
chr7	136104704	136104803	3431299	0	+	0.555556	(0.515,0.57]	chr7	319905	113	INTRON	INTRON	ENSG00000232053	ENSG00000232053.7	ENST00000657456.1:ENST00000668062.1:ENST00000668668.1:ENST00000445293.6:ENST00000659747.1:ENST00000668896.1:ENST00000435996.1	lncRNA	lncRNA	lncRNA	lncRNA	5	38	2	1.67758	1.81174	1.9459	0.0471728	0.0429089	0.168737	0.148082
chr2	235538835	235538935	1041785	0	+	0.22	[0,0.28]	chr2	111222	139	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1:ENST00000402604.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	79	2	1.62991	1.81168	1.99345	0.0671202	0.0211881	0.183051	0.123133
chr17	22168347	22168447	6579347	0	+	0.47	(0.44,0.476]	chr17	639556	771	INTRON	INTRON	UBBP4	ENSG00000263563.7	ENST00000648259.1:ENST00000688301.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	10	88	2	1.42079	1.811525	2.20226	0.0526065	0.00238044	0.160978	0.0449397
chr1	1317350	1317450	359487	0	-	0.36	(0.35,0.378]	chr1	41630	13	EXON_LNCRNA	EXON_LNCRNA:INTRON	INTS11	ENSG00000127054.22	ENST00000540437.5:ENST00000545578.5:ENST00000620829.4:ENST00000435064.6:ENST00000323275.10:ENST00000411962.5:ENST00000462432.5:ENST00000419704.5:ENST00000458452.7:ENST00000421495.6:ENST00000532772.5:ENST00000450926.6:ENST00000527098.5:ENST00000528879.5:ENST00000531377.5:ENST00000434694.6:ENST00000488042.6:ENST00000526797.5:ENST00000526332.5:ENST00000430786.5:ENST00000527719.5:ENST00000530031.5:ENST00000526113.1:ENST00000526904.5:ENST00000525603.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	17	161	2	1.49767	1.8114500000000002	2.12523	0.0243273	0.00090797199999999995	0.12011	0.0277043
chr6	37331471	37331571	2856060	0	+	0.41	(0.408,0.44]	chr6	270012	4	UTR3	UTR3:EXON_MRNA	TBC1D22B	ENSG00000065491.8	ENST00000373491.3	protein_coding	protein_coding	protein_coding	protein_coding	5	45	2	1.74775	1.811325	1.8749	0.0735403	0.0264246	0.190238	0.133676
chr22	41839952	41840052	7526066	0	+	0.49	(0.476,0.515]	chr22	769353	62	INTRON	INTRON	SREBF2	ENSG00000198911.12	ENST00000612482.4:ENST00000361204.9:ENST00000424354.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	78	2	1.4095	1.811315	2.21313	0.054012	0.00401502	0.16443	0.0578059
chr18	796701	796800	6940550	0	-	0.383838	(0.378,0.408]	chr18	686525	84	INTRON	INTRON	YES1	ENSG00000176105.14	ENST00000584307.5:ENST00000314574.5:ENST00000577611.1:ENST00000581960.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	100	2	1.69992	1.811305	1.92269	0.0169638	0.00836891	0.104032	0.0822143
chr14	21389255	21389354	5835580	0	-	0.474747	(0.44,0.476]	chr14	554613	27	INTRON	INTRON	CHD8	ENSG00000100888.15	ENST00000430710.8:ENST00000646647.2:ENST00000645929.1:ENST00000645206.1:ENST00000557364.6:ENST00000643469.1:ENST00000553870.2:ENST00000555935.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	37	2	1.77101	1.811235	1.85146	0.0693975	0.0545846	0.184298	0.182529
chr15	78492724	78492822	6068055	0	+	0.459184	(0.44,0.476]	chr15	578011	16	INTRON	INTRON	IREB2	ENSG00000136381.13	ENST00000258886.13:ENST00000558570.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	37	2	1.77101	1.811235	1.85146	0.0693975	0.0545846	0.184298	0.182529
chr19	38842235	38842328	7180759	0	-	0.462366	(0.44,0.476]	chr19	725865	7	EXON_MRNA	EXON_MRNA:INTRON	HNRNPL	ENSG00000104824.18	ENST00000221419.10:ENST00000647557.1:ENST00000388749.7:ENST00000601449.5:ENST00000597731.1:ENST00000600873.5:ENST00000598985.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	37	2	1.77101	1.811235	1.85146	0.0693975	0.0545846	0.184298	0.182529
chr22	43012223	43012323	7598325	0	-	0.47	(0.44,0.476]	chr22	778204	99	INTRON	INTRON	PACSIN2	ENSG00000100266.19	ENST00000263246.8:ENST00000453643.5:ENST00000445706.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	37	2	1.77101	1.811235	1.85146	0.0693975	0.0545846	0.184298	0.182529
chr18	35044161	35044260	6888347	0	+	0.383838	(0.378,0.408]	chr18	682731	20	INTRON	INTRON	MAPRE2	ENSG00000166974.13	ENST00000413393.5:ENST00000591734.5:ENST00000589180.5:ENST00000587359.5:ENST00000436190.6:ENST00000588349.6:ENST00000538170.6:ENST00000300249.10:ENST00000588910.5:ENST00000585592.1:ENST00000589699.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	59	2	1.45934	1.811185	2.16303	0.0442931	0.0252473	0.162302	0.12011
chr1	46009356	46009453	95879	0	+	0.536082	(0.515,0.57]	chr1	12751	6	INTRON	INTRON	MAST2	ENSG00000086015.23	ENST00000361297.7:ENST00000372008.6:ENST00000674079.1:ENST00000482881.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	74	2	1.64356	1.81116	1.97876	0.024299	0.00610685	0.12011	0.0706941
chr11	86023941	86024041	5014388	0	-	0.46	(0.44,0.476]	chr11	473007	4	SS3_PROX	SS3_PROX:INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000630913.2:ENST00000528398.5:ENST00000356360.9:ENST00000534412.5:ENST00000531558.1:ENST00000531930.5:ENST00000532041.5:ENST00000525162.5:ENST00000528256.1:ENST00000528411.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	13	112	2	1.63371	1.811055	1.9884	0.0271664	0.00219888	0.123904	0.0435144
chr3	195696989	195697089	1593841	0	+	0.55	(0.515,0.57]	chr3	165102	4	SS5_PROX	SS5_PROX:INTRON	MUC20-OT1	ENSG00000242086.8	ENST00000451982.6:ENST00000628917.2:ENST00000625358.2:ENST00000602127.5:ENST00000627502.2:ENST00000597034.5:ENST00000629823.2:ENST00000630243.2:ENST00000627718.2:ENST00000631366.2:ENST00000630170.2:ENST00000626569.2:ENST00000631189.2:ENST00000599448.5:ENST00000597482.5:ENST00000598992.5:ENST00000420851.6:ENST00000626870.2:ENST00000630417.2:ENST00000627152.2:ENST00000594715.5:ENST00000431767.5:ENST00000630863.2:ENST00000629686.2:ENST00000627562.2:ENST00000628547.2:ENST00000627363.2:ENST00000631105.2:ENST00000628823.2:ENST00000625776.2:ENST00000451228.5:ENST00000451216.6:ENST00000626617.2:ENST00000628301.2:ENST00000626178.2:ENST00000620737.3:ENST00000626007.2	lncRNA	lncRNA	lncRNA	lncRNA	8	56	2	1.43349	1.810995	2.1885	0.0378274	0.0202537	0.141117	0.121364
chr2	191689865	191689965	960485	0	+	0.41	(0.408,0.44]	chr2	104307	42	UTR3	UTR3:EXON_MRNA	NABP1	ENSG00000173559.15	ENST00000674262.1:ENST00000674360.1:ENST00000674406.1:ENST00000674414.1:ENST00000410026.7:ENST00000674172.1:ENST00000674187.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	54	2	1.58763	1.8109700000000002	2.03431	0.0639217	0.0154896	0.177824	0.108998
chr9	91932920	91933020	4285095	0	-	0.37	(0.35,0.378]	chr9	393926	86	INTRON	INTRON	ROR2	ENSG00000169071.15	ENST00000375715.5:ENST00000375708.4:ENST00000495386.5:ENST00000546883.1:ENST00000476440.1:ENST00000493846.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	73	2	1.21404	1.81087	2.4077	0.0632774	0.0122026	0.19754	0.0910127
chr17	45048764	45048864	6782079	0	-	0.48	(0.476,0.515]	chr17	669013	37	INTRON	INTRON	DCAKD	ENSG00000172992.13	ENST00000342350.10:ENST00000452796.7:ENST00000651974.1:ENST00000310604.9:ENST00000688601.1:ENST00000614054.5:ENST00000687739.1:ENST00000688897.1:ENST00000687955.1:ENST00000688577.1:ENST00000588499.6:ENST00000684999.1:ENST00000692180.1:ENST00000693065.1:ENST00000691739.1:ENST00000687525.1:ENST00000686754.1:ENST00000687463.1:ENST00000685712.1:ENST00000592902.6:ENST00000685986.1:ENST00000692907.1:ENST00000689764.1:ENST00000687414.1:ENST00000693328.1:ENST00000688568.1:ENST00000588295.2:ENST00000593094.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	87	2	1.70795	1.810815	1.91368	0.0155725	0.0135123	0.101363	0.101072
chr9	3528977	3529077	4092892	0	+	0.29	(0.28,0.32]	chr9	373028	18	INTRON	INTRON	RFX3-DT	ENSG00000232104.4	ENST00000691391.1:ENST00000691026.1:ENST00000423112.2	lncRNA	lncRNA	lncRNA	lncRNA	8	88	2	1.78855	1.81079	1.83303	0.0370023	0.0159081	0.139194	0.109464
chr18	9940249	9940348	6873612	0	+	0.373737	(0.35,0.378]	chr18	680892	28	INTRON	INTRON	VAPA	ENSG00000101558.14	ENST00000400000.7:ENST00000340541.4:ENST00000584796.5:ENST00000583879.5:ENST00000583475.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	13	114	2	1.39029	1.810785	2.23128	0.026172	0.00502483	0.133676	0.0619721
chr1	202764732	202764830	620301	0	-	0.469388	(0.44,0.476]	chr1	73634	7	EXON_MRNA	EXON_MRNA:INTRON	KDM5B	ENSG00000117139.18	ENST00000367265.9:ENST00000648338.1:ENST00000649542.1:ENST00000647757.1:ENST00000367264.7:ENST00000648473.1:ENST00000650569.1:ENST00000648056.1:ENST00000649770.1:ENST00000648469.1:ENST00000650417.1:ENST00000235790.9:ENST00000650422.1:ENST00000648738.1:ENST00000648744.1:ENST00000648958.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	69	2	1.40212	1.81071	2.2193	0.0524678	0.00896114	0.178047	0.0800073
chr17	22067439	22067539	6743405	0	-	0.51	(0.476,0.515]	chr17	662110	49	INTRON	INTRON	NCOR1P2	ENSG00000265019.1	ENST00000584728.1	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	9	73	2	1.75592	1.81042	1.86492	0.0550347	0.00862128	0.165463	0.0838846
chr15	30487962	30488059	5992218	0	+	0.381443	(0.378,0.408]	chr15	569674	1	EXON_LNCRNA	EXON_LNCRNA	ENSG00000270055	ENSG00000270055.1	ENST00000602663.1	lncRNA	lncRNA	lncRNA	lncRNA	6	58	2	1.59317	1.8103950000000002	2.02762	0.0603812	0.0181059	0.19151	0.107247
chr3	152269695	152269778	1534991	0	+	0.385542	(0.378,0.408]	chr3	159978	4	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	MBNL1	ENSG00000152601.18	ENST00000477171.1:ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000461436.1:ENST00000495875.6:ENST00000324210.10:ENST00000493459.5:ENST00000459747.1:ENST00000460591.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	17	150	2	1.71657	1.810295	1.90402	0.0125411	0.00217238	0.0926667	0.043502
chr9	96390819	96390917	4295093	0	-	0.357143	(0.35,0.378]	chr9	394952	20	INTRON	INTRON	ZNF367	ENSG00000165244.7	ENST00000375256.5	protein_coding	protein_coding	protein_coding	protein_coding	5	49	2	1.5118	1.810195	2.10859	0.0789277	0.0272722	0.198963	0.136494
chr1	89846479	89846579	159780	0	+	0.5	(0.476,0.515]	chr1	17281	23	INTRON	INTRON	LRRC8D	ENSG00000171492.14	ENST00000525774.5:ENST00000337338.9:ENST00000394593.7:ENST00000532201.5:ENST00000414841.1:ENST00000527156.1	protein_coding	protein_coding	protein_coding	protein_coding	8	69	2	1.33919	1.810155	2.28112	0.06316	0.00700958	0.197199	0.0718189
chr2	61520290	61520390	1131040	0	-	0.33	(0.32,0.35]	chr2	121608	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	XPO1	ENSG00000082898.19	ENST00000676553.1:ENST00000677556.1:ENST00000677814.1:ENST00000676771.1:ENST00000677803.1:ENST00000677239.1:ENST00000678790.1:ENST00000677928.1:ENST00000678182.1:ENST00000677150.1:ENST00000678172.1:ENST00000678360.1:ENST00000678081.1:ENST00000676889.1:ENST00000676783.1:ENST00000679035.1:ENST00000677422.1:ENST00000677417.1:ENST00000677813.1:ENST00000676999.1:ENST00000676667.1:ENST00000678263.1:ENST00000678877.1:ENST00000677933.1:ENST00000680228.1:ENST00000677289.1:ENST00000677190.1:ENST00000401558.7:ENST00000428210.5:ENST00000677290.1:ENST00000677850.1:ENST00000451765.6:ENST00000676789.1:ENST00000678741.1:ENST00000404992.6:ENST00000406957.5:ENST00000443240.5:ENST00000476585.5:ENST00000468259.1:ENST00000420673.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	112	2	1.4159	1.81014	2.20438	0.0467477	0.00271026	0.151803	0.0480766
chr8	102302943	102303043	4011632	0	-	0.42	(0.408,0.44]	chr8	367131	24	INTRON	INTRON	UBR5	ENSG00000104517.13	ENST00000520539.6:ENST00000220959.8:ENST00000521922.5:ENST00000520898.5:ENST00000519365.1	protein_coding	protein_coding	protein_coding	protein_coding	19	153	2	1.60953	1.81008	2.01063	0.00578534	0.00478395	0.0684334	0.0602209
chr2	38371338	38371438	1099289	0	-	0.43	(0.408,0.44]	chr2	117880	119	INTRON	INTRON	ATL2	ENSG00000119787.14	ENST00000378954.9:ENST00000406122.5:ENST00000405384.6:ENST00000402054.5:ENST00000419554.6:ENST00000651368.1:ENST00000452935.6:ENST00000449130.5:ENST00000443098.5:ENST00000456736.5:ENST00000472097.1:ENST00000451483.1:ENST00000416222.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	62	2	1.6546400000000001	1.80999	1.96534	0.0329965	0.0216499	0.145298	0.11491
chr7	87162539	87162638	3345724	0	+	0.292929	(0.28,0.32]	chr7	311631	67	INTRON	INTRON	DMTF1	ENSG00000135164.19	ENST00000413276.6:ENST00000447863.5:ENST00000579677.5:ENST00000425406.5:ENST00000446796.6:ENST00000420131.5:ENST00000414630.6:ENST00000547146.6:ENST00000579850.5:ENST00000453049.5:ENST00000331242.12:ENST00000430405.7:ENST00000449088.7:ENST00000448598.5:ENST00000428819.5:ENST00000432937.6:ENST00000584619.5:ENST00000432366.6:ENST00000423590.6:ENST00000394703.9:ENST00000584457.5:ENST00000580710.5:ENST00000579592.5:ENST00000434534.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	13	144	2	1.75786	1.8099699999999999	1.86208	0.0168053	0.0065898	0.103458	0.0737338
chr6	159788524	159788609	3254695	0	-	0.447059	(0.44,0.476]	chr6	302551	2	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TCP1	ENSG00000120438.12	ENST00000321394.12:ENST00000544255.5:ENST00000420894.6:ENST00000392168.6:ENST00000539756.1:ENST00000543532.5:ENST00000538530.5:ENST00000538128.5:ENST00000543517.5:ENST00000537390.5:ENST00000536394.1:ENST00000536607.1:ENST00000546023.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	48	395	2	1.39847	1.809855	2.22124	0.00600401	1.83923e-4	0.0700813	0.0123211
chr7	107541324	107541424	3612800	0	-	0.52	(0.515,0.57]	chr7	336704	136	INTRON	INTRON	COG5	ENSG00000164597.15	ENST00000297135.9:ENST00000347053.8:ENST00000393603.7:ENST00000475638.6:ENST00000605888.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	38	2	1.60221	1.80979	2.01737	0.0581855	0.0352218	0.188704	0.137535
chr8	129532559	129532659	4060608	0	-	0.31	(0.28,0.32]	chr8	369648	220	INTRON	INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1:ENST00000676273.1:ENST00000667643.1:ENST00000668791.1:ENST00000663716.1:ENST00000663572.1:ENST00000676148.1:ENST00000667962.1:ENST00000674877.1:ENST00000675316.1:ENST00000674656.1:ENST00000446592.7:ENST00000667341.1:ENST00000675186.1:ENST00000652971.1:ENST00000661447.1:ENST00000674863.1:ENST00000675498.1:ENST00000675527.1:ENST00000676108.1:ENST00000657647.1:ENST00000675589.1:ENST00000675913.1:ENST00000675109.1:ENST00000671632.1:ENST00000671311.1:ENST00000676099.1:ENST00000660652.1:ENST00000675522.1:ENST00000675183.1:ENST00000658861.1:ENST00000663991.1:ENST00000675044.1:ENST00000675435.1:ENST00000674639.1:ENST00000676069.1:ENST00000675532.1:ENST00000674762.1:ENST00000523151.6:ENST00000675948.1:ENST00000665364.1:ENST00000657251.1:ENST00000675166.1:ENST00000674883.1:ENST00000675867.1:ENST00000674580.1:ENST00000675393.1:ENST00000520048.1:ENST00000674906.1:ENST00000676030.1:ENST00000670588.1:ENST00000675072.1:ENST00000664936.1:ENST00000652914.1:ENST00000657069.1	lncRNA	lncRNA	lncRNA	lncRNA	9	101	2	1.58784	1.80968	2.03152	0.0369776	0.00983556	0.139194	0.0877296
chr8	31062806	31062904	3728225	0	+	0.387755	(0.378,0.408]	chr8	346535	32	INTRON	INTRON	WRN	ENSG00000165392.11	ENST00000650667.1:ENST00000298139.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	32	269	2	1.66663	1.80965	1.95267	0.00221983	0.00213034	0.0435144	0.041756
chr7	99464911	99465011	3583831	0	-	0.51	(0.476,0.515]	chr7	333845	43	INTRON	INTRON	ATP5MF-PTCD1:PTCD1:ATP5MF	ENSG00000248919.7:ENSG00000106246.18:ENSG00000241468.8	ENST00000413834.5:ENST00000430982.1:ENST00000437572.1:ENST00000451138.1:ENST00000466753.1:ENST00000414062.5:ENST00000449683.5:ENST00000292475.8:ENST00000359832.8:ENST00000488775.5:ENST00000394186.3:ENST00000523680.1:ENST00000485011.1:ENST00000524321.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	85	2	1.47534	1.809615	2.14389	0.0350582	0.00540862	0.137535	0.066545000000000007
chr12	24886197	24886297	5297278	0	-	0.51	(0.476,0.515]	chr12	503865	44	INTRON	INTRON	BCAT1	ENSG00000060982.15	ENST00000261192.12:ENST00000538118.5:ENST00000342945.9:ENST00000539282.5:ENST00000539780.5:ENST00000544418.1:ENST00000546285.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	74	2	1.5222	1.8095849999999998	2.09697	0.0276881	0.0136924	0.137011	0.0949306
chr7	105540413	105540512	3375768	0	+	0.454545	(0.44,0.476]	chr7	316053	33	INTRON	INTRON	RINT1	ENSG00000135249.8	ENST00000467392.5:ENST00000482041.5:ENST00000493041.5:ENST00000257700.7:ENST00000497979.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	18	154	2	1.59359	1.809565	2.02554	0.0156777	0.00109938	0.101453	0.03038
chr4	54188	54287	1905295	0	+	0.626263	(0.57,1]	chr4	190993	3	INTRON	INTRON	ZNF595	ENSG00000272602.6	ENST00000608255.2:ENST00000609518.5:ENST00000509152.3:ENST00000610261.6:ENST00000502981.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	35	2	1.28607	1.80951	2.33295	0.0504184	0.0122896	0.174922	0.091087
chr7	33006041	33006140	3304954	0	+	0.363636	(0.35,0.378]	chr7	306946	8	UTR3	UTR3:EXON_MRNA	FKBP9	ENSG00000122642.11	ENST00000538336.5:ENST00000242209.9:ENST00000490776.3	protein_coding	protein_coding	protein_coding	protein_coding	13	126	2	1.54566	1.8094649999999999	2.07327	0.0207593	0.00411159	0.122348	0.0564928
chr22	20570119	20570218	7479998	0	+	0.474747	(0.44,0.476]	chr22	763022	11	INTRON	INTRON	MED15	ENSG00000099917.17	ENST00000433831.5:ENST00000292733.11:ENST00000263205.11:ENST00000406969.5:ENST00000382974.6:ENST00000492381.5:ENST00000478831.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	78	2	1.76195	1.8094549999999998	1.85696	0.0252608	0.0107727	0.12011	0.0920575
chr7	100688896	100688990	3587496	0	-	0.457447	(0.44,0.476]	chr7	334640	8	UTR5	UTR5:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GIGYF1	ENSG00000146830.11	ENST00000678049.1:ENST00000646601.1:ENST00000275732.5:ENST00000643385.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	21	177	2	1.73903	1.809325	1.87962	0.00725325	0.00166775	0.072984	0.0378607
chr3	149052144	149052244	1840645	0	-	0.26	[0,0.28]	chr3	185129	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	HLTF	ENSG00000071794.16	ENST00000310053.10:ENST00000465259.5:ENST00000392912.6:ENST00000494055.5:ENST00000493881.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	110	2	1.537	1.80928	2.08156	0.0312625	0.020235	0.14427	0.109955
chr7	1435845	1435944	3462026	0	-	0.515152	(0.476,0.515]	chr7	323655	3	INTRON	INTRON	MICALL2	ENSG00000164877.19	ENST00000493998.1:ENST00000496184.1:ENST00000472100.5:ENST00000297508.8:ENST00000467783.1:ENST00000467394.5:ENST00000413446.5:ENST00000479007.5:ENST00000471899.5:ENST00000470807.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	93	2	1.54739	1.809275	2.07116	0.0222105	0.00731321	0.116092	0.076234
chr2	113478240	113478340	853886	0	+	0.35	(0.32,0.35]	chr2	95830	68	INTRON	INTRON	CBWD2	ENSG00000136682.16	ENST00000259199.9:ENST00000416503.6:ENST00000358604.7:ENST00000456188.5:ENST00000479583.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	62	2	1.53859	1.8092199999999998	2.07985	0.0534261	0.0303092	0.162935	0.143025
chr1	6195352	6195452	366157	0	-	0.54	(0.515,0.57]	chr1	43024	19	INTRON	INTRON	RPL22	ENSG00000116251.11	ENST00000234875.9:ENST00000480661.1:ENST00000497965.5:ENST00000471204.5:ENST00000465387.5:ENST00000462296.5:ENST00000465335.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	41	2	1.38593	1.80917	2.23241	0.0581268	0.0554883	0.188651	0.165463
chr1	65435112	65435211	137335	0	+	0.424242	(0.408,0.44]	chr1	15494	33	UTR3	UTR3:EXON_MRNA:INTRON	LEPR:LEPROT	ENSG00000116678.20:ENSG00000213625.9	ENST00000371060.7:ENST00000371059.7:ENST00000349533.11:ENST00000371065.9:ENST00000613538.1	protein_coding	protein_coding	protein_coding	protein_coding	11	97	2	1.2558	1.8091149999999998	2.36243	0.0690037	0.00107664	0.184298	0.0300133
chr1	26716619	26716719	51377	0	+	0.5	(0.476,0.515]	chr1	6542	187	INTRON	INTRON	ARID1A	ENSG00000117713.21	ENST00000430799.7:ENST00000324856.13:ENST00000637465.1:ENST00000457599.6	protein_coding	protein_coding	protein_coding	protein_coding	17	146	2	1.63496	1.8089849999999998	1.98301	0.00936172	0.00291693	0.0859012	0.0480353
chr2	107702251	107702351	1205571	0	-	0.27	[0,0.28]	chr2	128520	28	INTRON	INTRON	LINC01885:ENSG00000286769	ENSG00000237880.2:ENSG00000286769.1	ENST00000654481.1:ENST00000669817.1	lncRNA	lncRNA	lncRNA	lncRNA	6	79	2	1.69895	1.808965	1.91898	0.0568939	0.0266433	0.167723	0.134413
chr11	62516462	62516555	4959039	0	-	0.354839	(0.35,0.378]	chr11	466187	7	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	AHNAK	ENSG00000124942.14	ENST00000530124.5:ENST00000257247.11:ENST00000525875.1:ENST00000533365.5:ENST00000378024.9	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	114	2	1.49516	1.8089	2.12264	0.0351684	0.0023865	0.137535	0.0450097
chr6	149784458	149784557	2996392	0	+	0.454545	(0.44,0.476]	chr6	280374	109	INTRON	INTRON	PCMT1	ENSG00000120265.19	ENST00000367384.7:ENST00000367378.6:ENST00000484601.6:ENST00000367380.9:ENST00000544496.5:ENST00000649295.1:ENST00000494411.6:ENST00000464889.7:ENST00000486585.2:ENST00000495487.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	102	2	1.76961	1.8087749999999998	1.84794	0.0127847	0.00808024	0.0926667	0.0807319
chr3	152336229	152336329	1535663	0	+	0.33	(0.32,0.35]	chr3	160003	6	INTRON	INTRON	MBNL1	ENSG00000152601.18	ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000495875.6:ENST00000324210.10:ENST00000493459.5:ENST00000459747.1:ENST00000460591.5:ENST00000545754.5:ENST00000357472.7:ENST00000324196.9:ENST00000498502.5:ENST00000463374.5:ENST00000485910.5:ENST00000465907.6:ENST00000492948.5:ENST00000485509.5:ENST00000464596.5	protein_coding	protein_coding	protein_coding	protein_coding	17	171	2	1.52301	1.8087499999999999	2.09449	0.0205623	0.00154394	0.110999	0.0362716
chr6	85632780	85632879	3151345	0	-	0.515152	(0.476,0.515]	chr6	293889	83	INTRON	INTRON	ENSG00000271793:SYNCRIP	ENSG00000271793.2:ENSG00000135316.19	ENST00000682083.1:ENST00000683074.1:ENST00000681965.1:ENST00000682504.1:ENST00000682106.1:ENST00000683364.1:ENST00000683436.1:ENST00000684220.1:ENST00000683909.1:ENST00000684462.1:ENST00000616122.5:ENST00000678528.1:ENST00000676637.1:ENST00000677771.1:ENST00000355238.11:ENST00000678878.1:ENST00000677481.1:ENST00000677646.1:ENST00000676630.1:ENST00000678618.1:ENST00000676542.1:ENST00000677059.1:ENST00000444272.2:ENST00000678899.1:ENST00000369622.8:ENST00000678355.1:ENST00000676688.1:ENST00000677514.1:ENST00000678816.1:ENST00000678930.1:ENST00000678589.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	68	2	1.4095	1.808695	2.20789	0.054012	0.00820497	0.16443	0.081115
chr10	70170012	70170112	4640890	0	-	0.56	(0.515,0.57]	chr10	426919	2	SS5_PROX	SS5_PROX:INTRON	SAR1A	ENSG00000079332.15	ENST00000373242.6:ENST00000373241.9:ENST00000373239.2	protein_coding	protein_coding	protein_coding	protein_coding	9	67	2	1.59629	1.8086799999999998	2.02107	0.0274344	0.00910188	0.136554	0.0809976
chr1	45658936	45659027	440309	0	-	0.384615	(0.378,0.408]	chr1	53350	3	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	GPBP1L1	ENSG00000159592.11	ENST00000290795.7:ENST00000355105.8:ENST00000495616.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	93	2	1.75132	1.80865	1.86598	0.0300232	0.00695593	0.129138	0.0754576
chr11	3722756	3722856	4894410	0	-	0.46	(0.44,0.476]	chr11	458841	2	SS5_PROX	SS5_PROX:INTRON	NUP98	ENSG00000110713.17	ENST00000359171.8:ENST00000324932.12:ENST00000650171.1:ENST00000355260.7:ENST00000397004.8:ENST00000397007.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	46	2	1.7651	1.8082799999999999	1.85146	0.0545846	0.039388	0.182529	0.143072
chr5	141612307	141612407	2740122	0	-	0.41	(0.408,0.44]	chr5	258168	237	INTRON	INTRON	DIAPH1	ENSG00000131504.18	ENST00000647433.1:ENST00000389054.8:ENST00000518047.5:ENST00000523100.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	75	2	1.61024	1.808265	2.00629	0.0200746	0.0189661	0.121073	0.108861
chr15	85003234	85003334	6089144	0	+	0.43	(0.408,0.44]	chr15	579504	205	INTRON	INTRON	PDE8A	ENSG00000073417.15	ENST00000310298.8:ENST00000557957.5:ENST00000394553.6:ENST00000339708.9:ENST00000478717.5:ENST00000485596.5:ENST00000559742.5:ENST00000559086.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	54	2	1.53263	1.808195	2.08376	0.0733439	0.0129886	0.190051	0.0991656
chr5	141602924	141603024	2740028	0	-	0.44	(0.408,0.44]	chr5	258168	143	INTRON	INTRON	DIAPH1	ENSG00000131504.18	ENST00000647433.1:ENST00000389054.8:ENST00000518047.5:ENST00000523100.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	54	2	1.53263	1.808195	2.08376	0.0733439	0.0129886	0.190051	0.0991656
chr7	10528510	10528610	3482064	0	-	0.42	(0.408,0.44]	chr7	325766	754	INTRON	INTRON	MGC4859	ENSG00000283117.1	ENST00000634803.1	lncRNA	lncRNA	lncRNA	lncRNA	6	54	2	1.53263	1.808195	2.08376	0.0733439	0.0129886	0.190051	0.0991656
chr11	86036703	86036803	5014519	0	-	0.29	(0.28,0.32]	chr11	473022	47	INTRON	INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000630913.2:ENST00000528398.5:ENST00000356360.9:ENST00000534412.5:ENST00000531558.1:ENST00000531930.5:ENST00000532041.5:ENST00000525162.5:ENST00000528256.1:ENST00000528411.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	22	191	2	1.20538	1.808165	2.41095	0.0285219	0.00308492	0.1389	0.0496985
chr1	40162732	40162831	79976	0	+	0.373737	(0.35,0.378]	chr1	10405	7	INTRON	INTRON	RLF	ENSG00000117000.9	ENST00000372771.5	protein_coding	protein_coding	protein_coding	protein_coding	6	57	2	1.75561	1.80808	1.86055	0.0739399	0.0168498	0.190914	0.11068
chr7	152312527	152312623	3680051	0	-	0.364583	(0.35,0.378]	chr7	341633	7	EXON_MRNA	EXON_MRNA:INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000684262.1:ENST00000490130.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	57	2	1.75561	1.80808	1.86055	0.0739399	0.0168498	0.190914	0.11068
chr19	10969391	10969490	7015641	0	+	0.434343	(0.408,0.44]	chr19	697168	37	INTRON	INTRON	SMARCA4	ENSG00000127616.20	ENST00000644737.1:ENST00000642726.1:ENST00000646484.1:ENST00000643549.1:ENST00000643296.1:ENST00000647230.1:ENST00000642628.1:ENST00000646510.1:ENST00000429416.8:ENST00000644760.1:ENST00000344626.10:ENST00000646693.2:ENST00000645460.1:ENST00000541122.6:ENST00000589677.5:ENST00000444061.8:ENST00000590574.6	protein_coding	protein_coding	protein_coding	protein_coding	6	52	2	1.40374	1.80806	2.21238	0.0721345	0.0193525	0.187433	0.119831
chr11	5340607	5340701	4896619	0	-	0.382979	(0.378,0.408]	chr11	459163	4	EXON_LNCRNA	EXON_LNCRNA:INTRON	HBG2:ENSG00000239920:HBE1:OR51B5	ENSG00000196565.15:ENSG00000239920.2:ENSG00000213931.7:ENSG00000167355.8	ENST00000380252.6:ENST00000380259.7:ENST00000643199.1:ENST00000292896.3:ENST00000380237.5:ENST00000420726.6:ENST00000420465.6:ENST00000415970.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	59	2	1.50417	1.808055	2.11194	0.0384675	0.0292534	0.159169	0.128055
chr9	37207234	37207334	4118529	0	+	0.28	[0,0.28]	chr9	375389	203	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000461038.5:ENST00000488607.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	91	2	1.64178	1.80802	1.97426	0.0390996	0.0275926	0.161325	0.123904
chr1	145625308	145625408	210163	0	+	0.41	(0.408,0.44]	chr1	22964	12	INTRON	INTRON	GPR89A	ENSG00000117262.19	ENST00000313835.14:ENST00000460277.5:ENST00000528944.5:ENST00000466593.5:ENST00000534502.5:ENST00000462900.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	54	2	1.74108	1.80799	1.8749	0.0424099	0.0264246	0.148082	0.133676
chr9	131418412	131418512	4217213	0	+	0.42	(0.408,0.44]	chr9	386720	238	INTRON	INTRON	PRRC2B	ENSG00000288701.1	ENST00000682525.1:ENST00000684596.1:ENST00000683519.1:ENST00000682501.1	protein_coding	protein_coding	protein_coding	protein_coding	6	54	2	1.74108	1.80799	1.8749	0.0424099	0.0264246	0.148082	0.133676
chr17	32363868	32363964	6598124	0	+	0.34375	(0.32,0.35]	chr17	641919	5	INTRON	INTRON	ZNF207	ENSG00000010244.19	ENST00000321233.10:ENST00000394673.6:ENST00000394670.9:ENST00000342555.10:ENST00000577908.5:ENST00000394679.9:ENST00000581531.5:ENST00000579416.1:ENST00000582705.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	77	2	1.1701	1.80795	2.4458	0.0518461	0.0425977	0.176696	0.148082
chr11	86005645	86005745	5014195	0	-	0.47	(0.44,0.476]	chr11	472970	18	INTRON	INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000630913.2:ENST00000528398.5:ENST00000356360.9:ENST00000534412.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	24	192	2	1.42807	1.80788	2.18769	0.0102585	0.00110958	0.089002	0.0306328
chr1	70145401	70145500	479280	0	-	0.232323	[0,0.28]	chr1	57608	7	UTR3	UTR3:EXON_MRNA	LRRC40	ENSG00000066557.6	ENST00000370952.4	protein_coding	protein_coding	protein_coding	protein_coding	6	80	2	1.75741	1.8078699999999999	1.85833	0.0424454	0.0378973	0.161763	0.141283
chr6	31755803	31755901	2843653	0	+	0.367347	(0.35,0.378]	chr6	267818	18	INTRON	INTRON	MSH5:MSH5-SAPCD1	ENSG00000204410.16:ENSG00000255152.8	ENST00000375755.8:ENST00000375750.9:ENST00000650702.1:ENST00000493662.6:ENST00000375703.7:ENST00000375740.7:ENST00000423982.6:ENST00000463144.5:ENST00000450148.5:ENST00000468602.5:ENST00000468136.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	17	159	2	1.67275	1.8078699999999999	1.94299	0.012772	0.0023472	0.0926667	0.0443878
chr17	78118172	78118259	6844377	0	-	0.563218	(0.515,0.57]	chr17	677118	1	SS3_PROX	SS3_PROX:INTRON	TMC6	ENSG00000141524.18	ENST00000590602.6:ENST00000592076.5:ENST00000322914.7:ENST00000392467.7:ENST00000306591.11:ENST00000593044.5:ENST00000591436.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	19	136	2	1.55907	1.80782	2.05657	0.00979581	0.00134538	0.0836115	0.0337766
chr10	68756793	68756877	4442640	0	+	0.25	[0,0.28]	chr10	409667	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CCAR1	ENSG00000060339.14	ENST00000630771.2:ENST00000543719.5:ENST00000541012.5:ENST00000265872.11:ENST00000539539.5:ENST00000543229.5:ENST00000536012.5:ENST00000543225.5:ENST00000540210.5:ENST00000483264.1:ENST00000479143.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	20	242	2	1.56728	1.8077899999999998	2.0483	0.0106896	0.00571666	0.0918443	0.0657377
chr12	122134164	122134242	5240429	0	+	0.346154	(0.32,0.35]	chr12	497536	1	SS5_PROX	SS5_PROX:INTRON	MLXIP	ENSG00000175727.14	ENST00000319080.12:ENST00000538698.5:ENST00000541750.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	13	129	2	1.16723	1.807775	2.44832	0.0721055	8.3807e-4	0.187433	0.0263691
chr1	28509360	28509451	57207	0	+	0.461538	(0.44,0.476]	chr1	7388	6	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	RCC1:SNHG3	ENSG00000180198.17:ENSG00000242125.3	ENST00000398958.6:ENST00000649185.1:ENST00000413987.1:ENST00000427469.5:ENST00000683442.1:ENST00000434290.6:ENST00000373833.10:ENST00000437681.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	46	393	2	1.74178	1.8077	1.87362	0.00156645	8.23885e-4	0.0360728	0.0262406
chr12	57585091	57585187	5147828	0	+	0.447917	(0.44,0.476]	chr12	486875	10	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	KIF5A	ENSG00000155980.13	ENST00000674619.1:ENST00000455537.7:ENST00000676457.1:ENST00000675882.1:ENST00000675929.1:ENST00000675737.1:ENST00000676437.1:ENST00000675433.1:ENST00000674980.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	72	2	1.49942	1.8077	2.11598	0.0792118	0.0035604	0.199574	0.0548355
chr17	37329386	37329486	6762271	0	-	0.54	(0.515,0.57]	chr17	664949	4	SS3_PROX	SS3_PROX:INTRON	ACACA	ENSG00000278540.5	ENST00000616317.5:ENST00000614428.4:ENST00000613146.4:ENST00000615229.4:ENST00000621960.1:ENST00000617548.1:ENST00000616352.4:ENST00000614789.4:ENST00000614438.1:ENST00000612007.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:non_stop_decay:nonsense_mediated_decay	8	60	2	1.79385	1.8076349999999999	1.82142	0.0201222	0.0191173	0.121243	0.108861
chr22	21675814	21675914	7482550	0	+	0.55	(0.515,0.57]	chr22	763345	3	INTRON	INTRON	PPIL2	ENSG00000100023.20	ENST00000679795.1:ENST00000679540.1:ENST00000679580.1:ENST00000681286.1:ENST00000680061.1:ENST00000681338.1:ENST00000681956.1:ENST00000679827.1:ENST00000679534.1:ENST00000679479.1:ENST00000680393.1:ENST00000680463.1:ENST00000680426.1:ENST00000335025.12:ENST00000498109.2:ENST00000496819.2:ENST00000398831.8:ENST00000681394.1:ENST00000679477.1:ENST00000626352.2:ENST00000417788.5:ENST00000458567.5:ENST00000681791.1:ENST00000679692.1:ENST00000680962.1:ENST00000679857.1:ENST00000679586.1:ENST00000680094.1:ENST00000484439.5:ENST00000680434.1:ENST00000680109.1:ENST00000406385.1:ENST00000680022.1:ENST00000681137.1:ENST00000680860.1:ENST00000680183.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	60	2	1.79385	1.8076349999999999	1.82142	0.0201222	0.0191173	0.121243	0.108861
chr6	35841742	35841839	3088010	0	-	0.536082	(0.515,0.57]	chr6	288814	30	INTRON	INTRON	SRPK1	ENSG00000096063.16	ENST00000373825.7:ENST00000423325.6:ENST00000346162.10:ENST00000361690.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	14	102	2	1.67532	1.8075999999999999	1.93988	0.00981991	0.00481033	0.083811	0.0638089
chr1	93362827	93362927	164370	0	+	0.18	[0,0.28]	chr1	17855	23	UTR3	UTR3:EXON_MRNA	DR1	ENSG00000117505.13	ENST00000370272.9	protein_coding	protein_coding	protein_coding	protein_coding	5	66	2	1.55741	1.807485	2.05756	0.0792968	0.0352544	0.199711	0.150301
chr4	136789	136888	1905768	0	+	0.282828	(0.28,0.32]	chr4	191032	49	INTRON	INTRON	ZNF718	ENSG00000250312.8	ENST00000642529.1:ENST00000510175.6:ENST00000609714.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	13	146	2	1.64216	1.8073649999999999	1.97257	0.0158791	0.00773991	0.109464	0.0757402
chr16	21878837	21878937	6462032	0	-	0.36	(0.35,0.378]	chr16	623468	1	SS5_PROX	SS5_PROX:INTRON	NPIPB4	ENSG00000185864.18	ENST00000543449.1:ENST00000538859.1	protein_coding	processed_transcript	protein_coding	processed_transcript	17	157	2	1.3225	1.807315	2.29213	0.0347068	6.83971e-4	0.137028	0.0238173
chr7	148879217	148879317	3670713	0	-	0.39	(0.378,0.408]	chr7	340632	80	INTRON	INTRON	EZH2	ENSG00000106462.12	ENST00000683292.1:ENST00000320356.7:ENST00000492143.5:ENST00000478654.5:ENST00000350995.6:ENST00000460911.5:ENST00000683744.1:ENST00000682317.1:ENST00000682263.1:ENST00000476773.5:ENST00000483967.5:ENST00000498186.5:ENST00000483012.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	23	202	2	1.34669	1.807245	2.2678	0.0234498	2.85e-4	0.11867	0.0150568
chr1	50749766	50749866	450147	0	-	0.39	(0.378,0.408]	chr1	54249	46	INTRON	INTRON	FAF1	ENSG00000185104.21	ENST00000396153.7:ENST00000487898.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	65	2	1.51223	1.807175	2.10212	0.051139	0.0141232	0.176696	0.0959618
chr7	152410940	152411040	3681043	0	-	0.4	(0.378,0.408]	chr7	341660	519	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000682301.1:ENST00000452749.2:ENST00000680867.1:ENST00000683800.1:ENST00000684278.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	78	2	1.34117	1.80713	2.27309	0.0505568	0.00769587	0.17538	0.0754631
chr7	12380305	12380385	3485198	0	-	0.325	(0.32,0.35]	chr7	325942	4	SS5_PROX	SS5_PROX:INTRON	VWDE	ENSG00000146530.15	ENST00000275358.8:ENST00000452576.6:ENST00000521169.5:ENST00000326715.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	16	162	2	1.75409	1.8071199999999998	1.86015	0.0101283	0.00474542	0.0850389	0.0635285
chr6	147687614	147687714	2990872	0	+	0.24	[0,0.28]	chr6	280163	111	INTRON	INTRON	ENSG00000227681	ENSG00000227681.5	ENST00000427015.1:ENST00000432506.5:ENST00000442094.5	lncRNA	lncRNA	lncRNA	lncRNA	5	65	2	1.75741	1.807035	1.85666	0.0660997	0.0424454	0.181924	0.161763
chr6	15491437	15491536	2825406	0	+	0.434343	(0.408,0.44]	chr6	265224	35	INTRON	INTRON	JARID2	ENSG00000008083.14	ENST00000341776.7:ENST00000397311.4	protein_coding	protein_coding	protein_coding	protein_coding	6	52	2	1.79818	1.80695	1.81572	0.0626779	0.020428	0.175915	0.122109
chr11	6597558	6597657	4902999	0	-	0.474747	(0.44,0.476]	chr11	459404	26	UTR3	UTR3:EXON_MRNA	RRP8	ENSG00000132275.11	ENST00000254605.11	protein_coding	protein_coding	protein_coding	protein_coding	7	62	2	1.68545	1.8069099999999998	1.92837	0.0322071	0.0222222	0.132543	0.124303
chr1	225870975	225871075	646112	0	-	0.55	(0.515,0.57]	chr1	76516	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	TMEM63A	ENSG00000196187.12	ENST00000366835.8	protein_coding	protein_coding	protein_coding	protein_coding	5	39	2	1.75372	1.806895	1.86007	0.0526611	0.0386904	0.178401	0.14279
chr19	11118096	11118195	7017121	0	+	0.545455	(0.515,0.57]	chr19	697485	7	INTRON	INTRON	LDLR	ENSG00000130164.14	ENST00000557933.5:ENST00000558518.6:ENST00000545707.5:ENST00000535915.5:ENST00000455727.6:ENST00000558013.5:ENST00000252444.9:ENST00000559340.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	39	2	1.75372	1.806895	1.86007	0.0526611	0.0386904	0.178401	0.14279
chr7	102555368	102555468	3588703	0	-	0.54	(0.515,0.57]	chr7	335032	96	INTRON	INTRON	POLR2J3	ENSG00000168255.20	ENST00000489144.5:ENST00000464525.5:ENST00000379340.9:ENST00000486319.5:ENST00000503564.5:ENST00000511773.5:ENST00000513506.6:ENST00000508848.5:ENST00000504677.5:ENST00000506060.5:ENST00000502415.5:ENST00000507355.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	39	2	1.75372	1.806895	1.86007	0.0526611	0.0386904	0.178401	0.14279
chr16	31185560	31185656	6340614	0	+	0.4375	(0.408,0.44]	chr16	608337	5	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	FUS	ENSG00000089280.19	ENST00000566605.5:ENST00000254108.12:ENST00000380244.7:ENST00000487509.6:ENST00000568685.1:ENST00000570090.1:ENST00000474990.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	30	254	2	1.43872	1.806775	2.17483	0.00844299	5.29275e-4	0.0827764	0.021226
chr2	186503531	186503631	942993	0	+	0.5	(0.476,0.515]	chr2	103270	1	SS3_PROX	SS3_PROX:INTRON	ZC3H15	ENSG00000065548.18	ENST00000421536.5:ENST00000337859.11:ENST00000481101.5:ENST00000468120.5:ENST00000496289.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	20	169	2	1.60181	1.80676	2.01171	0.0108406	0.00120156	0.0873034	0.0319492
chr2	48347151	48347251	777646	0	+	0.33	(0.32,0.35]	chr2	87476	4	SS5_PROX	SS5_PROX:INTRON	FOXN2	ENSG00000170802.17	ENST00000413569.5:ENST00000340553.8	protein_coding	protein_coding	protein_coding	protein_coding	7	73	2	1.55682	1.80674	2.05666	0.0724487	0.00840213	0.188101	0.0824581
chr1	155664089	155664187	563061	0	-	0.397959	(0.378,0.408]	chr1	67145	23	INTRON	INTRON	YY1AP1	ENSG00000163374.20	ENST00000368339.9:ENST00000295566.8:ENST00000368330.6:ENST00000436865.5:ENST00000359205.9:ENST00000407221.5:ENST00000404643.5:ENST00000361140.8:ENST00000361831.9:ENST00000347088.9:ENST00000354691.9:ENST00000368340.9:ENST00000311573.9:ENST00000442834.6:ENST00000355499.9:ENST00000405763.7:ENST00000488784.5:ENST00000493625.5:ENST00000477470.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	89	2	1.27711	1.80665	2.33619	0.0441401	0.00607113	0.162255	0.0676501
chrX	151972276	151972372	7908616	0	-	0.416667	(0.408,0.44]	chrX	804815	11	EXON_MRNA	EXON_MRNA:INTRON	GABRE	ENSG00000102287.19	ENST00000370328.4:ENST00000441219.5:ENST00000491339.1:ENST00000417300.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	38	318	2	1.52126	1.806645	2.09203	0.00602076	3.08603e-4	0.0675195	0.0157366
chr17	17261299	17261399	6736233	0	-	0.46	(0.44,0.476]	chr17	660967	3	SS5_PROX	SS5_PROX:INTRON	COPS3	ENSG00000141030.13	ENST00000268717.10:ENST00000539941.6:ENST00000578317.5:ENST00000439936.6:ENST00000486810.5:ENST00000577210.5:ENST00000417352.5:ENST00000584216.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	69	2	1.53117	1.80664	2.08211	0.0377545	0.0130715	0.140863	0.0996047
chr14	69769446	69769510	5777189	0	+	0.234375	[0,0.28]	chr14	547358	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SRSF5	ENSG00000100650.16	ENST00000553521.5:ENST00000554465.5:ENST00000394366.6:ENST00000553369.5:ENST00000557154.6:ENST00000553635.5:ENST00000556184.5:ENST00000557460.5:ENST00000556587.5:ENST00000555547.5:ENST00000554021.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	23	291	2	1.58033	1.80663	2.03293	0.0196694	0.00128671	0.109608	0.0333764
chr20	32360301	32360396	7255836	0	+	0.326316	(0.32,0.35]	chr20	737040	4	UTR5	UTR5:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ASXL1	ENSG00000171456.21	ENST00000651418.1:ENST00000375687.10:ENST00000613218.4:ENST00000646367.1:ENST00000644587.1:ENST00000620121.4:ENST00000645337.1:ENST00000649901.1:ENST00000646985.1:ENST00000645035.1:ENST00000497249.6:ENST00000643168.1:ENST00000375689.5:ENST00000306058.9:ENST00000555343.2:ENST00000645688.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	60	2	1.72405	1.80657	1.88909	0.0553737	0.0275418	0.165463	0.137011
chr14	103406165	103406264	5825829	0	+	0.535354	(0.515,0.57]	chr14	552794	5	INTRON	INTRON	MARK3	ENSG00000075413.19	ENST00000678179.1:ENST00000676838.1:ENST00000677348.1:ENST00000677404.1:ENST00000676694.1:ENST00000676938.1:ENST00000678619.1:ENST00000676897.1:ENST00000677214.1:ENST00000677942.1:ENST00000676830.1:ENST00000678999.1:ENST00000677228.1:ENST00000556744.2:ENST00000677104.1:ENST00000679330.1:ENST00000560417.6:ENST00000440884.7:ENST00000676475.1:ENST00000677035.1:ENST00000678022.1:ENST00000677560.1:ENST00000561314.6:ENST00000429436.7:ENST00000677118.1:ENST00000676564.1:ENST00000678169.1:ENST00000678175.1:ENST00000678897.1:ENST00000678278.1:ENST00000676645.1:ENST00000677829.1:ENST00000678302.1:ENST00000677133.1:ENST00000561164.2:ENST00000558223.6:ENST00000559328.6:ENST00000678207.1:ENST00000677360.1:ENST00000676905.1:ENST00000678343.1:ENST00000677347.1:ENST00000678071.1:ENST00000677432.1:ENST00000678237.1:ENST00000677604.1:ENST00000676518.1:ENST00000677051.1:ENST00000677857.1:ENST00000677869.1:ENST00000678423.1:ENST00000560603.6:ENST00000416682.6:ENST00000303622.13:ENST00000216288.11:ENST00000679105.1:ENST00000553942.5:ENST00000335102.9:ENST00000561225.1:ENST00000678091.1:ENST00000561071.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	64	2	1.69385	1.806505	1.91916	0.0231902	0.0139144	0.118148	0.10247
chr2	230735148	230735248	1030382	0	+	0.45	(0.44,0.476]	chr2	110002	207	INTRON	INTRON	CAB39	ENSG00000135932.12	ENST00000258418.10:ENST00000409788.7:ENST00000410084.7	protein_coding	protein_coding	protein_coding	protein_coding	9	78	2	1.56617	1.806455	2.04674	0.0338203	0.00803423	0.134476	0.0803474
chr2	216503390	216503490	1016121	0	+	0.51	(0.476,0.515]	chr2	108186	21	UTR3	UTR3:EXON_MRNA:INTRON	RPL37A	ENSG00000197756.10	ENST00000491306.6:ENST00000600880.5:ENST00000446558.5:ENST00000598925.5:ENST00000427280.6:ENST00000441179.2	protein_coding	protein_coding	protein_coding	protein_coding	7	65	2	1.61586	1.806425	1.99699	0.0567093	0.0110277	0.185107	0.0873897
chr21	37427571	37427671	7406835	0	+	0.3	(0.28,0.32]	chr21	754879	14	INTRON	INTRON	DYRK1A	ENSG00000157540.22	ENST00000646523.1:ENST00000647425.1:ENST00000647188.2:ENST00000647504.1:ENST00000644942.1:ENST00000338785.8:ENST00000643624.1:ENST00000643551.1:ENST00000426672.6:ENST00000398960.7:ENST00000646548.1:ENST00000645424.1:ENST00000643854.1:ENST00000455097.6:ENST00000642309.1:ENST00000645774.1:ENST00000398956.2	protein_coding	protein_coding	protein_coding	protein_coding	11	120	2	1.7305	1.80642	1.88234	0.0327022	0.00604688	0.133816	0.0700955
chr4	70916540	70916640	1970647	0	+	0.4	(0.378,0.408]	chr4	197571	136	INTRON	INTRON	MOB1B	ENSG00000173542.9	ENST00000502869.5:ENST00000509041.5:ENST00000309395.7:ENST00000396051.2:ENST00000511449.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	12	109	2	1.395	1.806415	2.21783	0.0467334	0.00141252	0.151763	0.0345383
chr1	31027195	31027295	412508	0	-	0.39	(0.378,0.408]	chr1	49725	197	INTRON	INTRON	PUM1	ENSG00000134644.16	ENST00000426105.7:ENST00000373747.7:ENST00000257075.9:ENST00000424085.6:ENST00000525843.5:ENST00000440538.6:ENST00000373741.8:ENST00000373742.6:ENST00000526215.5:ENST00000525948.5:ENST00000480602.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	53	2	1.66594	1.806375	1.94681	0.0457723	0.0320222	0.149888	0.144995
chr10	96528377	96528477	4673835	0	-	0.31	(0.28,0.32]	chr10	430666	2	SS3_PROX	SS3_PROX:INTRON	TM9SF3	ENSG00000077147.16	ENST00000371142.9:ENST00000649367.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	79	2	1.64432	1.806365	1.96841	0.0606133	0.0124199	0.171142	0.0973643
chr4	10104486	10104582	2107302	0	-	0.458333	(0.44,0.476]	chr4	208486	1	INTRON	INTRON	WDR1	ENSG00000071127.17	ENST00000499869.7:ENST00000382451.6:ENST00000382452.6:ENST00000502702.5:ENST00000508079.1:ENST00000264785.11:ENST00000505851.5:ENST00000514319.5:ENST00000515018.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	70	2	1.60467	1.8063	2.00793	0.0411383	0.00937685	0.1451	0.0859966
chr6	85631286	85631385	3151330	0	-	0.474747	(0.44,0.476]	chr6	293889	68	INTRON	INTRON	ENSG00000271793:SYNCRIP	ENSG00000271793.2:ENSG00000135316.19	ENST00000682083.1:ENST00000683074.1:ENST00000681965.1:ENST00000682504.1:ENST00000682106.1:ENST00000683364.1:ENST00000683436.1:ENST00000684220.1:ENST00000683909.1:ENST00000684462.1:ENST00000616122.5:ENST00000678528.1:ENST00000676637.1:ENST00000677771.1:ENST00000355238.11:ENST00000678878.1:ENST00000677481.1:ENST00000677646.1:ENST00000676630.1:ENST00000678618.1:ENST00000676542.1:ENST00000677059.1:ENST00000444272.2:ENST00000678899.1:ENST00000369622.8:ENST00000678355.1:ENST00000676688.1:ENST00000677514.1:ENST00000678816.1:ENST00000678930.1:ENST00000678589.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	17	142	2	1.52537	1.8062200000000002	2.08707	0.0133087	0.00262893	0.094512	0.0471412
chr15	92891204	92891303	6103591	0	+	0.464646	(0.44,0.476]	chr15	581369	25	INTRON	INTRON	CHASERR:ENSG00000279765	ENSG00000272888.8:ENSG00000279765.3	ENST00000653163.1:ENST00000557682.6:ENST00000556895.5:ENST00000554894.5:ENST00000629685.2:ENST00000554133.5:ENST00000630790.1:ENST00000555520.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	8	71	2	1.55662	1.8060399999999999	2.05546	0.0688347	0.00467486	0.184298	0.0631417
chr11	66640813	66640907	4811051	0	+	0.43617	(0.408,0.44]	chr11	447892	7	UTR3	UTR3:EXON_MRNA:INTRON	RBM14-RBM4:RBM4	ENSG00000248643.5:ENSG00000173933.21	ENST00000412278.2:ENST00000421355.1:ENST00000500635.2:ENST00000396053.9:ENST00000408993.6:ENST00000578778.5:ENST00000398692.8:ENST00000483858.5:ENST00000310092.12:ENST00000510173.6:ENST00000528039.5:ENST00000506523.6:ENST00000530235.1:ENST00000409406.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	73	2	1.60344	1.80593	2.00842	0.0387506	0.0108512	0.160156	0.0873034
chr2	87477621	87477721	826146	0	+	0.41	(0.408,0.44]	chr2	92422	1	SS3_PROX	SS3_PROX:INTRON	CYTOR:ENSG00000284879	ENSG00000222041.12:ENSG00000284879.1	ENST00000642796.1:ENST00000643589.1:ENST00000642451.1:ENST00000646386.1:ENST00000644478.1:ENST00000409139.6:ENST00000331944.10:ENST00000644125.1:ENST00000643743.1:ENST00000644577.1:ENST00000643276.1:ENST00000409898.2:ENST00000419680.6:ENST00000644976.1:ENST00000643070.1:ENST00000646855.1:ENST00000414584.1:ENST00000455131.5:ENST00000646636.1:ENST00000642293.1:ENST00000423846.5:ENST00000644040.1:ENST00000645138.1:ENST00000437561.2:ENST00000629257.1:ENST00000414030.6	lncRNA	lncRNA	lncRNA	lncRNA	5	45	2	1.53263	1.80591	2.07919	0.0733439	0.0291499	0.190051	0.14147
chr17	78675539	78675638	6844742	0	-	0.585859	(0.57,1]	chr17	677248	16	UTR3	UTR3:EXON_MRNA	CYTH1	ENSG00000108669.17	ENST00000589296.5:ENST00000361101.8:ENST00000446868.8:ENST00000591455.5:ENST00000589297.5:ENST00000585509.5:ENST00000586299.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	30	2	1.58776	1.805835	2.02391	0.0339274	0.0295652	0.142135	0.134508
chr9	108933468	108933567	4310792	0	-	0.585859	(0.57,1]	chr9	396178	24	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	ELP1	ENSG00000070061.16	ENST00000675765.1:ENST00000374647.10:ENST00000675078.1:ENST00000674948.1:ENST00000676121.1:ENST00000676429.1:ENST00000674704.1:ENST00000674938.1:ENST00000675602.1:ENST00000675215.1:ENST00000676044.1:ENST00000675979.1:ENST00000675325.1:ENST00000495759.6:ENST00000675893.1:ENST00000675943.1:ENST00000675535.1:ENST00000674890.1:ENST00000675233.1:ENST00000676086.1:ENST00000674836.1:ENST00000675406.1:ENST00000675748.1:ENST00000675400.1:ENST00000676237.1:ENST00000675825.1:ENST00000676424.1:ENST00000675647.1:ENST00000675877.1:ENST00000676416.1:ENST00000675052.1:ENST00000674535.1:ENST00000537196.1:ENST00000675566.1:ENST00000675507.1:ENST00000675727.1:ENST00000675938.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	30	2	1.58776	1.805835	2.02391	0.0339274	0.0295652	0.142135	0.134508
chr2	233295390	233295484	1039821	0	+	0.478723	(0.476,0.515]	chr2	110972	12	UTR3	UTR3:EXON_MRNA	ATG16L1	ENSG00000085978.22	ENST00000347464.9:ENST00000373525.9:ENST00000392021.7:ENST00000392017.9:ENST00000479942.5:ENST00000474148.5:ENST00000392020.8:ENST00000392018.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	54	2	1.68092	1.805755	1.93059	0.0474026	0.023762	0.169265	0.118822
chr8	26312710	26312809	3716308	0	+	0.363636	(0.35,0.378]	chr8	345372	77	INTRON	INTRON	PPP2R2A	ENSG00000221914.11	ENST00000380737.8:ENST00000520329.5:ENST00000518254.5:ENST00000524169.5:ENST00000518397.5:ENST00000522535.5:ENST00000665949.1:ENST00000522150.5:ENST00000523473.5:ENST00000521095.5:ENST00000660435.1:ENST00000523925.5:ENST00000524099.5:ENST00000315985.7:ENST00000519636.5:ENST00000522482.5:ENST00000521557.5:ENST00000519439.5:ENST00000521484.5:ENST00000523964.5:ENST00000667651.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	14	133	2	1.52225	1.805755	2.08926	0.0322499	0.00143926	0.132695	0.0347731
chr20	34102372	34102470	7329531	0	-	0.326531	(0.32,0.35]	chr20	746521	34	INTRON	INTRON	EIF2S2	ENSG00000125977.7	ENST00000374980.3	protein_coding	protein_coding	protein_coding	protein_coding	6	51	2	1.37958	1.8056999999999999	2.23182	0.068598	0.0577841	0.188484	0.184298
chr22	41849344	41849444	7526160	0	+	0.52	(0.515,0.57]	chr22	769353	156	INTRON	INTRON	SREBF2	ENSG00000198911.12	ENST00000612482.4:ENST00000361204.9:ENST00000424354.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	44	2	1.7407	1.8056999999999999	1.8707	0.0523213	0.0242347	0.160182	0.130613
chr14	103430766	103430866	5826084	0	+	0.28	[0,0.28]	chr14	552823	10	INTRON	INTRON	MARK3	ENSG00000075413.19	ENST00000678179.1:ENST00000676838.1:ENST00000677348.1:ENST00000677404.1:ENST00000676694.1:ENST00000676938.1:ENST00000678619.1:ENST00000676897.1:ENST00000677214.1:ENST00000677942.1:ENST00000676830.1:ENST00000678999.1:ENST00000677228.1:ENST00000556744.2:ENST00000677104.1:ENST00000679330.1:ENST00000560417.6:ENST00000440884.7:ENST00000676475.1:ENST00000677035.1:ENST00000678022.1:ENST00000677560.1:ENST00000561314.6:ENST00000429436.7:ENST00000677118.1:ENST00000676564.1:ENST00000678169.1:ENST00000678175.1:ENST00000678897.1:ENST00000678278.1:ENST00000676645.1:ENST00000677829.1:ENST00000678302.1:ENST00000677133.1:ENST00000561164.2:ENST00000558223.6:ENST00000559328.6:ENST00000678207.1:ENST00000677360.1:ENST00000676905.1:ENST00000678343.1:ENST00000677347.1:ENST00000678071.1:ENST00000677432.1:ENST00000678237.1:ENST00000677604.1:ENST00000676518.1:ENST00000677051.1:ENST00000677857.1:ENST00000677869.1:ENST00000678423.1:ENST00000560603.6:ENST00000416682.6:ENST00000303622.13:ENST00000216288.11:ENST00000679105.1:ENST00000553942.5:ENST00000335102.9:ENST00000561225.1:ENST00000678091.1:ENST00000561071.5:ENST00000558698.5:ENST00000559268.5:ENST00000560731.5:ENST00000676745.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	65	2	1.66929	1.8056649999999999	1.94204	0.0544139	0.0537506	0.180803	0.164972
chr21	37402279	37402379	7406577	0	+	0.34	(0.32,0.35]	chr21	754850	268	INTRON	INTRON	DYRK1A	ENSG00000157540.22	ENST00000646523.1:ENST00000647425.1:ENST00000647188.2:ENST00000647504.1:ENST00000644942.1:ENST00000338785.8:ENST00000643624.1:ENST00000643551.1:ENST00000426672.6:ENST00000398960.7	protein_coding	protein_coding	protein_coding	protein_coding	8	80	2	1.72098	1.80564	1.8903	0.0298043	0.0192903	0.129138	0.119831
chr20	35738067	35738167	7336515	0	-	0.52	(0.515,0.57]	chr20	747495	11	INTRON	INTRON	RBM39	ENSG00000131051.24	ENST00000253363.11:ENST00000639702.1:ENST00000656873.1:ENST00000463004.5:ENST00000361162.10:ENST00000461283.5:ENST00000403542.6:ENST00000338163.10:ENST00000528062.7:ENST00000429968.5:ENST00000444878.5:ENST00000665058.1:ENST00000374038.7:ENST00000412738.5:ENST00000434927.5:ENST00000425184.5:ENST00000481037.5:ENST00000455343.5:ENST00000416108.5:ENST00000426951.5:ENST00000477334.1:ENST00000442447.5:ENST00000449489.5:ENST00000433027.5:ENST00000487604.1:ENST00000453310.5:ENST00000416529.5:ENST00000397370.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	74	518	2	1.79548	1.80558	1.81568	5.87222e-4	2.94133e-4	0.0224695	0.0153363
chr6	4781806	4781906	2790916	0	+	0.4	(0.378,0.408]	chr6	263598	46	INTRON	INTRON	CDYL	ENSG00000153046.18	ENST00000328908.9:ENST00000491864.1:ENST00000440139.5:ENST00000483019.1:ENST00000397588.8:ENST00000472453.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	72	2	1.51701	1.805515	2.09402	0.0404516	0.0126438	0.144865	0.0982897
chr6	147243060	147243160	2989096	0	+	0.39	(0.378,0.408]	chr6	280013	34	INTRON	INTRON	STXBP5	ENSG00000164506.15	ENST00000321680.11:ENST00000367481.7:ENST00000546097.5:ENST00000367480.7	protein_coding	protein_coding	protein_coding	protein_coding	16	147	2	1.62726	1.805425	1.98359	0.0118749	0.0032533	0.0962115	0.0508595
chr1	88770832	88770920	156638	0	+	0.511364	(0.476,0.515]	chr1	17062	4	SS5_PROX	SS5_PROX:INTRON	PKN2	ENSG00000065243.20	ENST00000316005.11:ENST00000370521.8:ENST00000370513.9	protein_coding	protein_coding	protein_coding	protein_coding	5	44	2	1.68092	1.80538	1.92984	0.0474026	0.0466474	0.169265	0.151522
chr12	55781590	55781690	5332460	0	-	0.36	(0.35,0.378]	chr12	509126	206	INTRON	INTRON	SARNP	ENSG00000205323.9	ENST00000546604.5:ENST00000552884.5:ENST00000336133.8:ENST00000552080.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	69	2	1.56836	1.8053	2.04224	0.0363073	0.0240966	0.138959	0.129929
chr2	131211879	131211977	865477	0	+	0.377551	(0.35,0.378]	chr2	97182	3	INTRON	INTRON	PLEKHB2:POTEE	ENSG00000115762.17:ENSG00000188219.16	ENST00000404460.5:ENST00000683005.1	protein_coding	protein_coding	protein_coding	protein_coding	10	96	2	1.40928	1.8051400000000002	2.201	0.0566272	0.00256708	0.167395	0.0466761
chr6	15246444	15246539	2822948	0	+	0.347368	(0.32,0.35]	chr6	265182	5	UTR5	UTR5:EXON_MRNA	JARID2	ENSG00000008083.14	ENST00000341776.7	protein_coding	protein_coding	protein_coding	protein_coding	19	180	2	1.69943	1.8051	1.91077	0.00870588	0.00442345	0.0788605	0.061054
chr3	6597644	6597744	1357220	0	+	0.31	(0.28,0.32]	chr3	142522	132	INTRON	INTRON	ENSG00000189229	ENSG00000189229.12	ENST00000433639.1:ENST00000655754.1:ENST00000658468.1:ENST00000669512.1:ENST00000667028.1:ENST00000655541.1:ENST00000668643.1:ENST00000671568.1:ENST00000671036.1:ENST00000669798.1:ENST00000655753.1:ENST00000655856.1:ENST00000658398.1:ENST00000661518.1:ENST00000661279.1:ENST00000655495.1:ENST00000663041.1:ENST00000659827.1:ENST00000667716.1:ENST00000668416.1:ENST00000658133.1:ENST00000342990.4:ENST00000660054.1:ENST00000671370.1	lncRNA	lncRNA	lncRNA	lncRNA	6	71	2	1.61031	1.8050950000000001	1.99988	0.0600513	0.0228757	0.190658	0.118056
chr3	48530540	48530639	1688643	0	-	0.30303	(0.28,0.32]	chr3	172531	45	INTRON	INTRON	PFKFB4	ENSG00000114268.12	ENST00000232375.8:ENST00000490115.5:ENST00000383734.6:ENST00000416568.5:ENST00000417753.5:ENST00000445633.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	71	2	1.61031	1.8050950000000001	1.99988	0.0600513	0.0228757	0.190658	0.118056
chr15	58908770	58908869	6193877	0	-	0.333333	(0.32,0.35]	chr15	590088	71	INTRON	INTRON	SLTM	ENSG00000137776.17	ENST00000380516.7:ENST00000492526.5:ENST00000557924.5:ENST00000558756.5:ENST00000249736.11:ENST00000559305.5:ENST00000480144.5:ENST00000628684.2:ENST00000559880.5:ENST00000558486.5:ENST00000560682.5:ENST00000557950.5:ENST00000560532.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	68	2	1.72098	1.805035	1.88909	0.0553737	0.0192903	0.165463	0.119831
chr16	21874561	21874660	6461989	0	-	0.414141	(0.408,0.44]	chr16	623467	84	INTRON	INTRON	NPIPB4	ENSG00000185864.18	ENST00000543449.1:ENST00000538859.1	protein_coding	processed_transcript	protein_coding	processed_transcript	26	224	2	1.75363	1.805025	1.85642	0.00280589	0.00241155	0.0488779	0.0442389
chr12	56105198	56105298	5145587	0	+	0.64	(0.57,1]	chr12	486149	1	SS5_PROX	SS5_PROX:INTRON	ENSG00000257411:PA2G4	ENSG00000257411.2:ENSG00000170515.14	ENST00000548861.2:ENST00000552766.5:ENST00000303305.11:ENST00000553057.5	protein_coding	protein_coding	protein_coding	protein_coding	6	27	2	1.55956	1.80491	2.05026	0.0448639	0.0321326	0.149888	0.145026
chr2	71373999	71374061	807445	0	+	0.435484	(0.408,0.44]	chr2	90194	2	EXON_LNCRNA	EXON_LNCRNA:INTRON	ZNF638:ENSG00000281195	ENSG00000075292.19:ENSG00000281195.1	ENST00000410075.5:ENST00000409544.5:ENST00000264447.9:ENST00000601581.3:ENST00000434786.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA:processed_transcript	6	51	2	1.55035	1.80491	2.05947	0.0455214	0.0333232	0.164236	0.134145
chr22	38487772	38487872	7587894	0	-	0.42	(0.408,0.44]	chr22	776718	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	DDX17	ENSG00000100201.23	ENST00000403230.3:ENST00000396821.8:ENST00000431312.2:ENST00000216019.11	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	51	2	1.55035	1.80491	2.05947	0.0455214	0.0333232	0.164236	0.134145
chr9	97656973	97657070	4172852	0	+	0.57732000000000006	(0.57,1]	chr9	380206	5	INTRON	INTRON	NCBP1	ENSG00000136937.13	ENST00000375147.8	protein_coding	protein_coding	protein_coding	protein_coding	6	27	2	1.55956	1.80491	2.05026	0.0448639	0.0321326	0.149888	0.145026
chr18	13665304	13665402	6951240	0	-	0.469388	(0.44,0.476]	chr18	687650	21	UTR3	UTR3:EXON_MRNA	FAM210A	ENSG00000177150.13	ENST00000322247.7:ENST00000651643.1:ENST00000402563.5	protein_coding	protein_coding	protein_coding	protein_coding	12	98	2	1.25386	1.80481	2.35576	0.0512703	0.00208591	0.158081	0.0424672
chr1	96735065	96735165	168074	0	+	0.5	(0.476,0.515]	chr1	18215	111	INTRON	INTRON	PTBP2	ENSG00000117569.19	ENST00000482253.5:ENST00000675735.1:ENST00000609116.5:ENST00000674951.1:ENST00000675080.1:ENST00000426398.3:ENST00000460706.5:ENST00000370197.5:ENST00000370198.5:ENST00000476419.5:ENST00000676292.1:ENST00000676096.1:ENST00000675365.1:ENST00000674579.1:ENST00000675401.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	45	2	1.69138	1.804775	1.91817	0.0481165	0.0459211	0.164984	0.153019
chr11	3697595	3697694	4894145	0	-	0.484848	(0.476,0.515]	chr11	458782	4	INTRON	INTRON	NUP98	ENSG00000110713.17	ENST00000359171.8:ENST00000324932.12:ENST00000650171.1:ENST00000355260.7:ENST00000429801.5:ENST00000529063.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	45	2	1.69138	1.804775	1.91817	0.0481165	0.0459211	0.164984	0.153019
chr12	110400636	110400735	5409168	0	-	0.494949	(0.476,0.515]	chr12	516463	38	INTRON	INTRON	ANAPC7:ENSG00000258210	ENSG00000196510.14:ENSG00000258210.1	ENST00000455511.9:ENST00000450008.3:ENST00000552170.2:ENST00000550231.1:ENST00000464697.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay	13	112	2	1.78551	1.8047499999999999	1.82399	0.0088836	0.00866166	0.0842392	0.0797547
chr22	20566917	20567017	7479964	0	+	0.57	(0.515,0.57]	chr22	763015	1	SS5_PROX	SS5_PROX:INTRON	MED15	ENSG00000099917.17	ENST00000433831.5:ENST00000292733.11:ENST00000263205.11:ENST00000406969.5:ENST00000382974.6:ENST00000492381.5:ENST00000478831.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	58	2	1.49552	1.80468	2.11384	0.0385038	0.0118599	0.159277	0.0899583
chr7	139400562	139400660	3438004	0	+	0.387755	(0.378,0.408]	chr7	320347	15	INTRON	INTRON	LUC7L2:FMC1-LUC7L2	ENSG00000146963.18:ENSG00000269955.2	ENST00000541170.7:ENST00000541515.3:ENST00000619796.4:ENST00000354926.9:ENST00000456182.5:ENST00000263545.7:ENST00000463912.5:ENST00000498518.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	61	2	1.78414	1.80467	1.8252	0.0619563	0.0144669	0.174514	0.105142
chr5	134779187	134779284	2490586	0	+	0.484536	(0.476,0.515]	chr5	237905	11	INTRON	INTRON	DDX46	ENSG00000145833.16	ENST00000628477.2:ENST00000452510.7:ENST00000507392.5:ENST00000354283.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	102	2	1.26204	1.80462	2.3472	0.0570171	0.00117711	0.167723	0.031662
chr3	177178499	177178599	1872259	0	-	0.3	(0.28,0.32]	chr3	187438	72	INTRON	INTRON	TBL1XR1	ENSG00000177565.18	ENST00000457928.7:ENST00000430069.5:ENST00000673974.1:ENST00000352800.10:ENST00000422442.6:ENST00000428970.5:ENST00000424913.5:ENST00000437738.5:ENST00000431421.5:ENST00000635794.1:ENST00000630796.2:ENST00000450267.5:ENST00000630833.2:ENST00000431674.5:ENST00000422066.5:ENST00000443315.5:ENST00000627825.2:ENST00000427349.5:ENST00000413084.5:ENST00000637137.1:ENST00000491623.2:ENST00000637544.1:ENST00000636187.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	56	2	1.41943	1.8045900000000001	2.18975	0.0776042	0.0528302	0.196285	0.178899
chr10	87245057	87245157	4660406	0	-	0.29	(0.28,0.32]	chr10	429433	50	EXON_LNCRNA	EXON_LNCRNA:INTRON	NUTM2A-AS1	ENSG00000223482.9	ENST00000692417.1:ENST00000688214.1:ENST00000659257.1:ENST00000671543.1:ENST00000451940.6:ENST00000687947.1:ENST00000663644.1:ENST00000684884.1:ENST00000664664.1:ENST00000446751.6:ENST00000456104.5:ENST00000433530.7:ENST00000688257.1:ENST00000433920.5:ENST00000687925.1:ENST00000666515.2:ENST00000688926.1:ENST00000447424.6:ENST00000690598.1:ENST00000663113.1:ENST00000667520.2:ENST00000693252.1	lncRNA	lncRNA	lncRNA	lncRNA	5	58	2	1.64432	1.804535	1.96475	0.0606133	0.0428385	0.171142	0.162255
chr15	27179370	27179470	5984237	0	+	0.32	(0.28,0.32]	chr15	569164	1522	INTRON	INTRON	GABRG3	ENSG00000182256.13	ENST00000615808.5:ENST00000555083.5	protein_coding	protein_coding	protein_coding	protein_coding	5	58	2	1.64432	1.804535	1.96475	0.0606133	0.0428385	0.171142	0.162255
chr10	35342998	35343098	4424567	0	+	0.49	(0.476,0.515]	chr10	407899	54	INTRON	INTRON	CCNY	ENSG00000108100.18	ENST00000374706.5:ENST00000490012.6:ENST00000493157.6:ENST00000374704.8:ENST00000265375.13:ENST00000339497.7:ENST00000492478.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	94	2	1.50655	1.8045050000000002	2.10246	0.0316424	0.00381269	0.13151	0.0562562
chr21	39281844	39281944	7465221	0	-	0.26	[0,0.28]	chr21	760548	12	INTRON	INTRON	BRWD1	ENSG00000185658.14	ENST00000333229.6:ENST00000342449.8:ENST00000380800.7	protein_coding	protein_coding	protein_coding	protein_coding	7	85	2	1.70895	1.804465	1.89998	0.0599553	0.0229749	0.169548	0.126178
chr3	186788138	186788223	1586145	0	+	0.4	(0.378,0.408]	chr3	164297	4	EXON_MRNA	EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	EIF4A2	ENSG00000156976.17	ENST00000426808.5:ENST00000323963.10:ENST00000440191.6:ENST00000425053.5:ENST00000429589.5:ENST00000485101.5:ENST00000443963.5:ENST00000468362.5:ENST00000492144.5:ENST00000497177.1:ENST00000494445.1:ENST00000461021.1:ENST00000496382.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	42	367	2	1.59916	1.804385	2.00961	0.00271082	7.30508e-4	0.0480848	0.0248722
chr21	46205036	46205135	7470625	0	-	0.464646	(0.44,0.476]	chr21	761464	84	INTRON	INTRON	LSS	ENSG00000160285.15	ENST00000356396.8:ENST00000397728.8:ENST00000457828.6:ENST00000522411.5	protein_coding	protein_coding	protein_coding	protein_coding	10	80	2	1.49932	1.80412	2.10892	0.0238667	0.0132897	0.129075	0.0944742
chr2	53704316	53704416	1117871	0	-	0.36	(0.35,0.378]	chr2	119764	34	INTRON	INTRON	ASB3	ENSG00000115239.24	ENST00000406053.5:ENST00000263634.8:ENST00000406625.6:ENST00000482829.5:ENST00000394717.3:ENST00000406687.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	67	2	1.44934	1.804055	2.15877	0.0658369	0.0102036	0.181518	0.089002
chr12	76825811	76825910	5174482	0	+	0.50505	(0.476,0.515]	chr12	490131	29	INTRON	INTRON	ZDHHC17	ENSG00000186908.15	ENST00000546778.5:ENST00000426126.7:ENST00000552453.5:ENST00000550876.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	44	2	1.74317	1.804045	1.86492	0.0550347	0.0396373	0.165463	0.161534
chr12	132789790	132789889	5449811	0	-	0.50505	(0.476,0.515]	chr12	522031	1	INTRON	INTRON	GOLGA3	ENSG00000090615.16	ENST00000204726.9:ENST00000450791.8:ENST00000693666.1:ENST00000688114.1:ENST00000687190.1:ENST00000690511.1:ENST00000685283.1:ENST00000691696.1:ENST00000691636.1:ENST00000690897.1:ENST00000690465.1:ENST00000456883.7:ENST00000692253.1:ENST00000687502.1:ENST00000688772.1:ENST00000687479.1:ENST00000690709.1:ENST00000545875.4:ENST00000688251.1:ENST00000690573.1:ENST00000685195.1:ENST00000686425.1:ENST00000693437.1:ENST00000692831.1:ENST00000688068.1:ENST00000692951.1:ENST00000689441.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	44	2	1.74317	1.804045	1.86492	0.0550347	0.0396373	0.165463	0.161534
chr1	65265930	65266030	135652	0	+	0.67	(0.57,1]	chr1	15346	6	INTRON	INTRON	DNAJC6	ENSG00000116675.16	ENST00000463018.5:ENST00000494710.6:ENST00000263441.11:ENST00000395325.7:ENST00000483402.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	16	71	2	1.57957	1.804035	2.0285	0.0132222	0.00132858	0.0999551	0.0333847
chr22	21596956	21597056	7481997	0	+	0.44	(0.408,0.44]	chr22	763238	36	INTRON	INTRON	UBE2L3	ENSG00000185651.16	ENST00000458578.6:ENST00000545681.2:ENST00000696046.1:ENST00000342192.9:ENST00000496722.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	114	2	1.45405	1.8040100000000001	2.15397	0.0381812	0.00128422	0.141795	0.0333518
chr21	22334599	22334699	7385714	0	+	0.43	(0.408,0.44]	chr21	752727	1214	INTRON	INTRON	ENSG00000226043	ENSG00000226043.2	ENST00000667099.1:ENST00000654607.1:ENST00000444130.1	lncRNA	lncRNA	lncRNA	lncRNA	12	103	2	1.52028	1.804005	2.08773	0.0250212	0.00404379	0.12011	0.0578376
chr10	17669692	17669791	4399522	0	+	0.494949	(0.476,0.515]	chr10	406156	88	INTRON	INTRON	STAM	ENSG00000136738.15	ENST00000377524.8:ENST00000377500.1:ENST00000445846.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	44	2	1.61586	1.803915	1.99197	0.0567093	0.039572	0.185107	0.143072
chr18	9203779	9203877	6869606	0	+	0.510204	(0.476,0.515]	chr18	680581	28	INTRON	INTRON	ANKRD12	ENSG00000101745.17	ENST00000262126.9:ENST00000540578.6:ENST00000581635.5:ENST00000400020.7:ENST00000581758.1:ENST00000546007.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	44	2	1.61586	1.803915	1.99197	0.0567093	0.039572	0.185107	0.143072
chr3	37284534	37284631	1396170	0	+	0.402062	(0.378,0.408]	chr3	146339	19	INTRON	INTRON	GOLGA4	ENSG00000144674.17	ENST00000435830.6:ENST00000444882.5:ENST00000356847.8:ENST00000450863.6:ENST00000361924.7:ENST00000429018.5:ENST00000419177.3:ENST00000437131.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	46	2	1.72045	1.8038699999999999	1.88729	0.0532327	0.0424671	0.162538	0.161763
chr10	68334914	68335013	4440787	0	+	0.363636	(0.35,0.378]	chr10	409480	23	INTRON	INTRON	HNRNPH3	ENSG00000096746.18	ENST00000469172.5:ENST00000461310.5:ENST00000265866.12:ENST00000480987.5:ENST00000486854.5:ENST00000467249.1:ENST00000354695.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	15	138	2	1.35315	1.80382	2.25449	0.0348969	0.00124584	0.13747500000000001	0.0328543
chr10	125082097	125082197	4713550	0	-	0.69	(0.57,1]	chr10	434897	426	INTRON	INTRON	CTBP2	ENSG00000175029.17	ENST00000337195.9:ENST00000411419.6:ENST00000494626.6:ENST00000531469.5:ENST00000460976.5:ENST00000476817.1:ENST00000530884.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	28	2	1.67986	1.80371	1.92756	0.0496395	0.0220439	0.174685	0.115395
chr19	47159471	47159570	7084168	0	+	0.363636	(0.35,0.378]	chr19	708792	19	INTRON	INTRON	SAE1	ENSG00000142230.13	ENST00000594144.5:ENST00000413379.7:ENST00000600706.5:ENST00000270225.12:ENST00000598840.5:ENST00000414294.6:ENST00000660039.1:ENST00000664120.1:ENST00000596995.1:ENST00000392776.3:ENST00000659110.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	13	122	2	1.53149	1.8036750000000001	2.07586	0.0256206	0.00297794	0.120376	0.0502007
chr2	173361748	173361846	922469	0	+	0.346939	(0.32,0.35]	chr2	101538	19	INTRON	INTRON	CDCA7	ENSG00000144354.15	ENST00000347703.7:ENST00000695912.1:ENST00000695913.1:ENST00000306721.8:ENST00000496441.5:ENST00000410019.3:ENST00000410101.7:ENST00000695914.1:ENST00000435616.5:ENST00000467411.5:ENST00000695901.1:ENST00000468359.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	63	2	1.77409	1.80362	1.83315	0.0414296	0.0313348	0.146067	0.144381
chr1	1397832	1397932	359901	0	-	0.46	(0.44,0.476]	chr1	41799	2	SS5_PROX	SS5_PROX:INTRON	CCNL2	ENSG00000221978.13	ENST00000400809.8:ENST00000482621.5:ENST00000496007.5:ENST00000481223.6:ENST00000488340.5:ENST00000471930.5:ENST00000408918.8:ENST00000473872.5:ENST00000425598.2:ENST00000463895.1:ENST00000497013.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	74	2	1.49801	1.803465	2.10892	0.0300375	0.0132897	0.142135	0.0944742
chr2	159732667	159732767	899688	0	+	0.45	(0.44,0.476]	chr2	99528	31	INTRON	INTRON	MARCHF7	ENSG00000136536.15	ENST00000539065.5:ENST00000259050.8:ENST00000409175.6:ENST00000421037.1:ENST00000473749.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	74	2	1.49801	1.803465	2.10892	0.0300375	0.0132897	0.142135	0.0944742
chr1	235275943	235276043	663340	0	-	0.53	(0.515,0.57]	chr1	78552	148	INTRON	INTRON	ARID4B	ENSG00000054267.22	ENST00000349213.7:ENST00000366603.6:ENST00000264183.9:ENST00000421364.5:ENST00000491632.5:ENST00000418304.1:ENST00000466653.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	52	2	1.7407	1.8034	1.8661	0.0274846	0.0242347	0.130613	0.123904
chrX	44952283	44952383	7649393	0	+	0.54	(0.515,0.57]	chrX	782726	779	INTRON	INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000675440.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000621147.5:ENST00000475233.1:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	77	2	1.28155	1.8033800000000002	2.3252100000000002	0.0362578	0.00525266	0.153037	0.0633615
chr10	68733675	68733775	4442390	0	+	0.48	(0.476,0.515]	chr10	409595	107	INTRON	INTRON	CCAR1	ENSG00000060339.14	ENST00000536391.5:ENST00000630771.2:ENST00000538031.5:ENST00000543719.5:ENST00000541012.5:ENST00000265872.11:ENST00000539539.5:ENST00000543229.5:ENST00000536012.5:ENST00000543225.5:ENST00000494903.2:ENST00000540210.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	53	2	1.69138	1.803315	1.91525	0.0481165	0.0232571	0.153019	0.127416
chr17	20904258	20904355	6576425	0	+	0.525773	(0.515,0.57]	chr17	639391	22	EXON_LNCRNA	EXON_LNCRNA:INTRON	CCDC144NL-AS1	ENSG00000233098.10	ENST00000577537.5:ENST00000692759.1:ENST00000443508.8:ENST00000692309.1:ENST00000439794.6:ENST00000417232.6:ENST00000583962.2:ENST00000577860.5	lncRNA	lncRNA	lncRNA	lncRNA	18	130	2	1.75925	1.80331	1.84737	0.00550187	0.00308996	0.0648867	0.0510878
chr1	89867645	89867745	159992	0	+	0.43	(0.408,0.44]	chr1	17285	206	INTRON	INTRON	LRRC8D	ENSG00000171492.14	ENST00000525774.5:ENST00000337338.9:ENST00000394593.7:ENST00000532201.5:ENST00000414841.1:ENST00000527156.1:ENST00000441269.2	protein_coding	protein_coding	protein_coding	protein_coding	11	97	2	1.78379	1.80327	1.82275	0.0123226	0.0120158	0.097243	0.0902542
chr1	205726325	205726422	623648	0	-	0.391753	(0.378,0.408]	chr1	74184	20	INTRON	INTRON	NUCKS1	ENSG00000069275.13	ENST00000367142.5	protein_coding	protein_coding	protein_coding	protein_coding	9	71	2	1.4946	1.80327	2.11194	0.0292534	0.024523	0.131869	0.128055
chr2	144443982	144444082	1241036	0	-	0.41	(0.408,0.44]	chr2	131703	131	INTRON	INTRON	ZEB2	ENSG00000169554.23	ENST00000636471.1:ENST00000627532.3:ENST00000638128.1:ENST00000637304.1:ENST00000636179.1:ENST00000636820.1:ENST00000637045.1:ENST00000419938.5:ENST00000409487.7:ENST00000440875.6:ENST00000636732.2:ENST00000636026.2:ENST00000675069.1:ENST00000689298.1:ENST00000539609.7:ENST00000558170.6:ENST00000303660.8:ENST00000427902.5:ENST00000637267.2:ENST00000392861.6:ENST00000431672.4:ENST00000409211.5:ENST00000465308.5:ENST00000434448.5:ENST00000472146.5:ENST00000461784.3:ENST00000476394.5:ENST00000637591.2:ENST00000479735.1:ENST00000453352.5:ENST00000435831.5:ENST00000444559.5:ENST00000630572.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	54	2	1.78881	1.8032	1.81759	0.0370259	0.0316273	0.144405	0.139194
chr5	55338914	55339013	2355401	0	+	0.424242	(0.408,0.44]	chr5	227152	97	INTRON	INTRON	MTREX	ENSG00000039123.16	ENST00000230640.10:ENST00000506750.5:ENST00000504997.1:ENST00000505565.5:ENST00000502953.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	54	2	1.78881	1.8032	1.81759	0.0370259	0.0316273	0.144405	0.139194
chr6	166948276	166948372	3264235	0	-	0.427083	(0.408,0.44]	chr6	303034	17	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	ENSG00000249141:RNASET2	ENSG00000249141.1:ENSG00000026297.17	ENST00000507747.1:ENST00000508775.6:ENST00000683770.1:ENST00000611959.2:ENST00000620173.5:ENST00000682774.1:ENST00000684236.1:ENST00000683968.1:ENST00000682498.1:ENST00000366855.10:ENST00000421787.5:ENST00000476238.6:ENST00000028008.9:ENST00000478180.6:ENST00000499370.6:ENST00000358165.7:ENST00000496851.6:ENST00000683158.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	54	2	1.78881	1.8032	1.81759	0.0370259	0.0316273	0.144405	0.139194
chr1	11022988	11023071	24668	0	+	0.325301	(0.32,0.35]	chr1	2604	5	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TARDBP	ENSG00000120948.19	ENST00000639083.1:ENST00000639599.1:ENST00000629725.2:ENST00000240185.8:ENST00000614757.4:ENST00000473869.5:ENST00000315091.7:ENST00000616545.4:ENST00000621790.4:ENST00000649624.1:ENST00000622057.4:ENST00000617172.4:ENST00000611963.4:ENST00000619555.4:ENST00000620632.4:ENST00000610369.4:ENST00000614494.1:ENST00000611136.4:ENST00000477447.6:ENST00000612542.1:ENST00000620505.1:ENST00000621573.1:ENST00000611008.4:ENST00000613177.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	13	131	2	1.662	1.803135	1.94427	0.0214	0.0042003	0.113959	0.0592276
chr1	23284696	23284795	399143	0	-	0.373737	(0.35,0.378]	chr1	47822	35	EXON_LNCRNA	EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	LINC01355	ENSG00000261326.4	ENST00000655082.1:ENST00000647667.1:ENST00000566551.1:ENST00000660265.1:ENST00000666981.1:ENST00000604481.1	lncRNA	lncRNA	lncRNA	lncRNA	7	67	2	1.68908	1.80307	1.91706	0.0301354	0.026412	0.142482	0.122506
chr5	146480949	146481049	2515854	0	+	0.2	[0,0.28]	chr5	240356	4	SS3_PROX	SS3_PROX:INTRON	TCERG1	ENSG00000113649.13	ENST00000296702.9:ENST00000679501.2:ENST00000394421.7:ENST00000549332.1:ENST00000515203.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	65	2	1.62313	1.80302	1.98291	0.0605286	0.0494143	0.191883	0.156195
chr22	21794651	21794750	7560653	0	-	0.606061	(0.57,1]	chr22	773370	55	INTRON	INTRON	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	11	47	2	1.42019	1.8029899999999999	2.18579	0.0315411	0.00400391	0.144381	0.0551303
chr11	74233001	74233101	4827147	0	+	0.37	(0.35,0.378]	chr11	450488	16	INTRON	INTRON	PPME1	ENSG00000214517.10	ENST00000328257.13:ENST00000398427.6:ENST00000543525.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	68	2	1.46325	1.802945	2.14264	0.0346125	0.0274795	0.148144	0.123904
chr4	80068537	80068636	2170509	0	-	0.464646	(0.44,0.476]	chr4	213931	122	INTRON	INTRON	ANTXR2	ENSG00000163297.18	ENST00000403729.7:ENST00000449651.5:ENST00000679571.1:ENST00000681710.1:ENST00000680913.1:ENST00000681115.1:ENST00000404191.5:ENST00000346652.10:ENST00000307333.7:ENST00000514959.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	74	2	1.4592	1.80293	2.14666	0.0342963	0.0116436	0.147255	0.0889659
chr3	128066703	128066803	1496676	0	+	0.52	(0.515,0.57]	chr3	156287	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SEC61A1	ENSG00000058262.10	ENST00000464451.5:ENST00000243253.8:ENST00000424880.2:ENST00000483956.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	96	2	1.50809	1.8028849999999998	2.09768	0.0294196	0.00151337	0.128055	0.0360297
chr4	2561134	2561234	1912761	0	+	0.41	(0.408,0.44]	chr4	191976	236	INTRON	INTRON	RNF4:FAM193A	ENSG00000063978.16:ENSG00000125386.16	ENST00000508235.1:ENST00000637812.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	51	2	1.60344	1.80286	2.00228	0.0389732	0.0387506	0.160156	0.143072
chr18	2725586	2725677	6865589	0	+	0.285714	(0.28,0.32]	chr18	680056	2	INTRON	INTRON	SMCHD1	ENSG00000101596.17	ENST00000320876.11:ENST00000688342.1:ENST00000693213.1:ENST00000577880.5:ENST00000584897.5:ENST00000583441.2:ENST00000690757.1:ENST00000581383.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	110	2	1.45628	1.80285	2.14942	0.0260726	0.0143412	0.133676	0.0966737
chr5	28858734	28858834	2330337	0	+	0.4	(0.378,0.408]	chr5	225135	482	INTRON	INTRON	LINC02109	ENSG00000259786.7	ENST00000658190.1	lncRNA	lncRNA	lncRNA	lncRNA	10	89	2	1.48475	1.80273	2.12071	0.0353336	0.00601933	0.137535	0.0700813
chr17	20868516	20868600	6576063	0	+	0.464286	(0.44,0.476]	chr17	639369	2	EXON_LNCRNA	EXON_LNCRNA	CCDC144NL-AS1	ENSG00000233098.10	ENST00000577537.5:ENST00000692759.1:ENST00000443508.8:ENST00000692309.1:ENST00000439794.6:ENST00000417232.6:ENST00000583962.2:ENST00000582324.5:ENST00000577860.5	lncRNA	lncRNA	lncRNA	lncRNA	26	219	2	1.63803	1.8027000000000002	1.96737	0.00596422	0.00102819	0.0674604	0.0294094
chr2	38747130	38747230	1099833	0	-	0.46	(0.44,0.476]	chr2	117989	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	SRSF7	ENSG00000115875.19	ENST00000446327.6:ENST00000313117.11:ENST00000425778.5:ENST00000425941.6:ENST00000452806.5:ENST00000409276.5:ENST00000432873.5:ENST00000431066.5:ENST00000443213.5:ENST00000487773.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	122	2	1.58453	1.802695	2.02086	0.0293513	0.00250949	0.142102	0.0446195
chr8	15759147	15759246	3706343	0	+	0.424242	(0.408,0.44]	chr8	343623	9	INTRON	INTRON	TUSC3	ENSG00000104723.21	ENST00000382020.8:ENST00000515859.5:ENST00000506802.5:ENST00000503731.6:ENST00000510836.5:ENST00000508446.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	51	2	1.43792	1.8026900000000001	2.16746	0.062843	0.024436	0.196433	0.12011
chr1	8875197	8875288	374270	0	-	0.406593	(0.378,0.408]	chr1	43648	3	SS3_PROX	SS3_PROX:INTRON	ENO1	ENSG00000074800.16	ENST00000234590.10:ENST00000647408.1:ENST00000646370.2:ENST00000645609.1:ENST00000497492.1:ENST00000646660.1:ENST00000646680.1:ENST00000646906.1:ENST00000646156.1:ENST00000643438.1:ENST00000489867.2:ENST00000486051.5:ENST00000492343.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	46	2	1.78011	1.8026550000000001	1.8252	0.0619563	0.0356367	0.174514	0.151629
chr16	84985477	84985576	6533907	0	-	0.393939	(0.378,0.408]	chr16	633131	31	INTRON	INTRON	ZDHHC7	ENSG00000153786.13	ENST00000313732.9:ENST00000344861.9:ENST00000564466.5:ENST00000569488.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	46	2	1.78011	1.8026550000000001	1.8252	0.0619563	0.0356367	0.174514	0.151629
chr5	38998965	38999064	2604890	0	-	0.383838	(0.378,0.408]	chr5	247878	17	INTRON	INTRON	RICTOR	ENSG00000164327.13	ENST00000357387.8:ENST00000511516.5:ENST00000296782.9:ENST00000510711.5:ENST00000513566.1:ENST00000514735.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	46	2	1.78011	1.8026550000000001	1.8252	0.0619563	0.0356367	0.174514	0.151629
chr1	29046942	29047041	60293	0	+	0.323232	(0.32,0.35]	chr1	7705	56	INTRON	INTRON	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000647918.1:ENST00000646800.1:ENST00000644342.1:ENST00000646189.1:ENST00000482464.6:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000646260.1:ENST00000373798.5:ENST00000644600.1:ENST00000649674.1:ENST00000643173.1:ENST00000343067.9:ENST00000644780.1:ENST00000650265.1:ENST00000648181.1:ENST00000643604.1:ENST00000648891.1:ENST00000373797.2:ENST00000349460.9:ENST00000645184.1:ENST00000645111.1:ENST00000643302.1:ENST00000645999.1:ENST00000642643.1:ENST00000636666.1:ENST00000644848.1:ENST00000644470.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	92	2	1.7162	1.802645	1.88909	0.0553737	0.00891437	0.165463	0.0849778
chr15	92943741	92943837	6104138	0	+	0.375	(0.35,0.378]	chr15	581450	8	EXON_MRNA	EXON_MRNA:INTRON	ENSG00000279765:CHD2	ENSG00000279765.3:ENSG00000173575.22	ENST00000630790.1:ENST00000626874.2:ENST00000394196.9:ENST00000635856.1:ENST00000420239.7:ENST00000628375.2:ENST00000625990.3:ENST00000626782.2:ENST00000637572.1:ENST00000637613.1:ENST00000636881.1:ENST00000625243.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	88	2	1.57499	1.8026299999999997	2.03027	0.0185901	0.0185322	0.117264	0.108861
chr17	28064265	28064365	6582737	0	+	0.4	(0.378,0.408]	chr17	639837	23	INTRON	INTRON	NLK	ENSG00000087095.13	ENST00000407008.8:ENST00000496808.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	64	2	1.29896	1.8026200000000001	2.30628	0.0575113	0.0163339	0.187655	0.101571
chrX	154797654	154797753	7915533	0	-	0.30303	(0.28,0.32]	chrX	806172	50	INTRON	INTRON	MPP1	ENSG00000130830.15	ENST00000369534.8:ENST00000413259.7:ENST00000439370.5:ENST00000393531.5:ENST00000453245.5:ENST00000494170.1:ENST00000462825.5:ENST00000393529.5:ENST00000475943.5:ENST00000428488.1:ENST00000417435.5:ENST00000369531.1:ENST00000471821.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	100	2	1.78733	1.8025950000000002	1.81786	0.0276087	0.0142986	0.123904	0.104025
chr2	233852364	233852464	1343840	0	-	0.4	(0.378,0.408]	chr2	140854	4	SS5_PROX	SS5_PROX:INTRON	HJURP	ENSG00000123485.12	ENST00000432087.5:ENST00000441687.5:ENST00000411486.7:ENST00000414924.5:ENST00000454020.1:ENST00000453122.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	91	2	1.41201	1.802475	2.19294	0.0550809	0.00254418	0.165463	0.0465115
chr20	38427873	38427970	7342234	0	-	0.587629	(0.57,1]	chr20	748314	3	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	SNHG17	ENSG00000196756.14	ENST00000654008.2:ENST00000658076.1:ENST00000662982.2:ENST00000456953.7:ENST00000654183.2:ENST00000663540.2:ENST00000651115.2:ENST00000660885.2:ENST00000662213.1:ENST00000665233.2:ENST00000666268.2:ENST00000665735.1:ENST00000660558.2:ENST00000691280.1:ENST00000658488.2:ENST00000688336.1:ENST00000668054.2:ENST00000690441.1:ENST00000655520.2:ENST00000687490.1:ENST00000664626.1:ENST00000658051.1:ENST00000668042.1:ENST00000686971.1:ENST00000663187.1:ENST00000669114.1:ENST00000653343.1:ENST00000657868.1:ENST00000663534.1:ENST00000658141.1:ENST00000689917.1:ENST00000664073.2:ENST00000653697.1:ENST00000656320.1:ENST00000686814.1:ENST00000417578.7:ENST00000654853.1:ENST00000665440.1:ENST00000436764.7:ENST00000668482.2:ENST00000671249.1:ENST00000655692.1:ENST00000662568.1:ENST00000659255.1:ENST00000693250.1:ENST00000691368.1:ENST00000693227.1:ENST00000690361.1:ENST00000670051.1:ENST00000667912.1:ENST00000693665.1:ENST00000665181.1:ENST00000687532.1:ENST00000691386.1:ENST00000693684.1:ENST00000666331.1:ENST00000669480.1:ENST00000658905.1:ENST00000661252.1:ENST00000669137.1:ENST00000688133.1:ENST00000689414.1:ENST00000691314.1:ENST00000669033.1:ENST00000686145.1:ENST00000653938.1:ENST00000663784.1:ENST00000665003.1:ENST00000659400.1:ENST00000653753.1:ENST00000449469.5:ENST00000654389.1:ENST00000656023.1:ENST00000692262.1:ENST00000414142.5:ENST00000670958.1:ENST00000657216.2:ENST00000664636.1:ENST00000657843.1:ENST00000660189.1:ENST00000660064.1:ENST00000423536.6:ENST00000666419.1:ENST00000413755.5	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	17	83	2	1.23894	1.80246	2.36598	0.0497875	1.04831e-4	0.17488	0.00920724
chr2	15528643	15528743	1072835	0	-	0.48	(0.476,0.515]	chr2	114441	169	INTRON	INTRON	NBAS	ENSG00000151779.13	ENST00000281513.10	protein_coding	protein_coding	protein_coding	protein_coding	16	126	2	1.42298	1.802385	2.18179	0.0171073	0.00322689	0.110916	0.0507087
chr22	20110893	20110991	7478554	0	+	0.306122	(0.28,0.32]	chr22	762762	9	UTR3	UTR3:EXON_MRNA	DGCR8	ENSG00000128191.16	ENST00000383024.6:ENST00000351989.8:ENST00000495826.5:ENST00000407755.1:ENST00000498171.5:ENST00000475941.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	33	343	2	1.39954	1.80236	2.20518	0.0154281	6.25901e-4	0.100793	0.0225268
chr5	136500120	136500220	2493743	0	+	0.43	(0.408,0.44]	chr5	238200	329	INTRON	INTRON	ENSG00000249803	ENSG00000249803.6	ENST00000653158.1:ENST00000446720.3:ENST00000665110.1:ENST00000511165.6:ENST00000666378.1:ENST00000657590.1:ENST00000658501.1:ENST00000660537.1:ENST00000659712.1	lncRNA	lncRNA	lncRNA	lncRNA	7	62	2	1.62122	1.8021600000000002	1.9831	0.0394247	0.018491	0.143072	0.116694
chr3	186971677	186971777	1586588	0	+	0.35	(0.32,0.35]	chr3	164332	74	INTRON	INTRON	ST6GAL1	ENSG00000073849.16	ENST00000676786.1:ENST00000169298.8:ENST00000457772.6:ENST00000455441.5:ENST00000427315.5:ENST00000677292.1:ENST00000458216.5:ENST00000430309.5:ENST00000417392.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	112	2	1.69015	1.8021449999999999	1.91414	0.0159619	0.011737	0.109464	0.0894475
chr5	126912134	126912234	2713370	0	-	0.45	(0.44,0.476]	chr5	255257	125	INTRON	INTRON	MARCHF3	ENSG00000173926.6	ENST00000308660.6:ENST00000504239.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	59	2	1.45853	1.80213	2.14573	0.0470887	0.0238593	0.152251	0.129075
chr7	119747213	119747312	3628810	0	-	0.292929	(0.28,0.32]	chr7	337319	419	INTRON	INTRON	LINC02476	ENSG00000225546.6	ENST00000660268.1:ENST00000431071.5	lncRNA	lncRNA	lncRNA	lncRNA	18	197	2	1.56877	1.80212	2.03547	0.0170771	0.0023449	0.104099	0.0443478
chr11	70407966	70408060	4821710	0	+	0.37234	(0.35,0.378]	chr11	449606	5	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	CTTN	ENSG00000085733.16	ENST00000346329.7:ENST00000301843.13:ENST00000527622.5:ENST00000482755.6:ENST00000376561.7:ENST00000415461.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	11	83	2	1.19652	1.80211	2.4077	0.0514734	0.0122026	0.176696	0.0910127
chr8	23569850	23569948	3715512	0	+	0.408163	(0.378,0.408]	chr8	345238	10	INTRON	INTRON	SLC25A37	ENSG00000147454.14	ENST00000519973.6:ENST00000290075.10:ENST00000417331.6:ENST00000518881.5:ENST00000523930.1:ENST00000523883.5:ENST00000522164.5:ENST00000521637.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	54	463	2	1.66859	1.802095	1.9356	0.00131599	8.34277e-4	0.0333932	0.0266389
chr21	6989229	6989328	7425912	0	-	0.363636	(0.35,0.378]	chr21	757520	22	INTRON	INTRON	ENSG00000280018	ENSG00000280018.4	ENST00000623165.3	lncRNA	lncRNA	lncRNA	lncRNA	6	59	2	1.76773	1.80203	1.83633	0.0373863	0.0335602	0.155878	0.134145
chr2	55047284	55047383	1121378	0	-	0.333333	(0.32,0.35]	chr2	120167	5	INTRON	INTRON	RTN4	ENSG00000115310.19	ENST00000404909.5:ENST00000394611.6:ENST00000317610.11:ENST00000357732.8:ENST00000337526.11:ENST00000357376.7:ENST00000438462.1:ENST00000427710.5	protein_coding	protein_coding	protein_coding	protein_coding	27	267	2	1.6356	1.80199	1.96838	0.0118604	7.04285e-4	0.0899583	0.0241881
chr7	111321685	111321785	3621699	0	-	0.34	(0.32,0.35]	chr7	337093	3578	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	66	2	1.37958	1.8019349999999998	2.22429	0.0577841	0.0226421	0.188484	0.117557
chr2	32194483	32194580	730074	0	+	0.319588	(0.28,0.32]	chr2	84197	1	INTRON	INTRON	SLC30A6	ENSG00000152683.14	ENST00000357055.7:ENST00000435660.5:ENST00000282587.9:ENST00000449777.5:ENST00000454324.5:ENST00000379343.6:ENST00000440718.5:ENST00000406369.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	90	2	1.51187	1.801925	2.09198	0.0598267	0.00780964	0.169278	0.0788246
chr9	33046798	33046897	4243071	0	-	0.535354	(0.515,0.57]	chr9	390017	52	UTR3	UTR3:EXON_MRNA	SMU1	ENSG00000122692.9	ENST00000397149.4	protein_coding	protein_coding	protein_coding	protein_coding	13	97	2	1.48296	1.801875	2.12079	0.0243813	0.00233112	0.131358	0.0432675
chr4	82830736	82830836	2179465	0	-	0.3	(0.28,0.32]	chr4	214262	4	SS5_PROX	SS5_PROX:INTRON	SEC31A	ENSG00000138674.17	ENST00000395310.7:ENST00000513858.5:ENST00000348405.8:ENST00000503937.5:ENST00000448323.5:ENST00000311785.11:ENST00000509142.5:ENST00000443462.6:ENST00000500777.6:ENST00000505472.5:ENST00000355196.6:ENST00000508502.5:ENST00000264405.9:ENST00000505984.5:ENST00000511338.1:ENST00000514362.5:ENST00000515749.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	89	2	1.59385	1.80187	2.00989	0.0427801	0.0190086	0.148082	0.118802
chr4	2506495	2506594	1912208	0	+	0.282828	(0.28,0.32]	chr4	191953	54	INTRON	INTRON	RNF4	ENSG00000063978.16	ENST00000541204.5:ENST00000502316.5:ENST00000509388.5:ENST00000507247.5:ENST00000314289.13:ENST00000511843.5:ENST00000509258.5:ENST00000513284.5:ENST00000511859.5:ENST00000513643.5:ENST00000506706.5:ENST00000511600.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	90	2	1.70122	1.801815	1.90241	0.0356118	0.0157236	0.138061	0.109464
chr10	63226678	63226778	4632994	0	-	0.39	(0.378,0.408]	chr10	426215	63	INTRON	INTRON	JMJD1C	ENSG00000171988.20	ENST00000399262.7:ENST00000402544.5:ENST00000542921.5:ENST00000469152.5:ENST00000489372.4:ENST00000633035.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	81	2	1.44787	1.801805	2.15574	0.0496837	0.00519611	0.156383	0.0654762
chr12	119681124	119681224	5234972	0	+	0.42	(0.408,0.44]	chr12	496719	9	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	PRKAB1	ENSG00000111725.11	ENST00000541640.5:ENST00000229328.10:ENST00000542698.1:ENST00000537057.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	71	2	1.67356	1.80179	1.93002	0.0239999	0.022095	0.123903	0.119664
chr5	168551585	168551685	2770435	0	-	0.38	(0.378,0.408]	chr5	260713	32	UTR3	UTR3:EXON_MRNA	PANK3	ENSG00000120137.7	ENST00000239231.7	protein_coding	protein_coding	protein_coding	protein_coding	11	79	2	1.2091	1.8017699999999999	2.39444	0.0486002	0.0122858	0.172998	0.091087
chr11	14650351	14650451	4743682	0	+	0.48	(0.476,0.515]	chr11	439279	49	INTRON	INTRON	PDE3B	ENSG00000152270.9	ENST00000282096.9:ENST00000455098.2:ENST00000534317.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	36	289	2	1.62878	1.801745	1.97471	0.0023659	0.00123172	0.044707	0.0321913
chr19	9671440	9671539	7133468	0	-	0.414141	(0.408,0.44]	chr19	718911	102	INTRON	INTRON	ZNF562	ENSG00000171466.10	ENST00000453372.7:ENST00000293648.8:ENST00000590155.5:ENST00000585688.5:ENST00000587392.5:ENST00000588653.5:ENST00000589542.1:ENST00000585350.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	64	2	1.75791	1.8015349999999999	1.84516	0.0378795	0.0193431	0.157034	0.108861
chr15	28244099	28244197	6123258	0	-	0.418367	(0.408,0.44]	chr15	583285	50	INTRON	INTRON	HERC2	ENSG00000128731.18	ENST00000261609.13	protein_coding	protein_coding	protein_coding	protein_coding	14	116	2	1.29147	1.8014949999999998	2.31152	0.0405108	0.00139382	0.145076	0.0341355
chr6	35877834	35877934	3088384	0	-	0.35	(0.32,0.35]	chr6	288860	31	INTRON	INTRON	SRPK1	ENSG00000096063.16	ENST00000373825.7:ENST00000423325.6:ENST00000346162.10:ENST00000361690.7:ENST00000510290.5:ENST00000373821.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	19	195	2	1.73447	1.80146	1.86845	0.00676377	0.00455255	0.0741642	0.0595107
chr7	72951651	72951751	3553772	0	-	0.49	(0.476,0.515]	chr7	330614	1	SS5_PROX	SS5_PROX:INTRON	NSUN5P2	ENSG00000106133.18	ENST00000602348.5:ENST00000444583.6:ENST00000388955.8:ENST00000485741.6:ENST00000457352.4	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	8	68	2	1.486	1.8013949999999999	2.11679	0.0430512	0.0115627	0.148082	0.0962115
chr11	65438050	65438150	4805923	0	+	0.56	(0.515,0.57]	chr11	446554	154	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	51	341	2	1.38773	1.801345	2.21496	0.00477227	1.22046e-4	0.0636201	0.00993581
chr13	95183729	95183828	5638689	0	-	0.494949	(0.476,0.515]	chr13	537109	53	INTRON	INTRON	ABCC4	ENSG00000125257.16	ENST00000645237.2:ENST00000643051.1:ENST00000643842.1:ENST00000646439.1:ENST00000643816.1:ENST00000536256.3:ENST00000643556.1:ENST00000629385.1:ENST00000642524.1:ENST00000645532.1:ENST00000644471.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	53	2	1.7425	1.80132	1.86014	0.0417334	0.0277606	0.147007	0.137011
chr13	98002009	98002101	5520998	0	+	0.521739	(0.515,0.57]	chr13	527901	5	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	IPO5	ENSG00000065150.21	ENST00000651721.2:ENST00000261574.10:ENST00000357602.7:ENST00000490680.5:ENST00000469360.5:ENST00000491555.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	52	2	1.48539	1.8013149999999998	2.11724	0.0553982	0.0110335	0.165463	0.0927187
chr6	167016548	167016647	3033542	0	+	0.373737	(0.35,0.378]	chr6	282656	26	INTRON	INTRON	CEP43	ENSG00000213066.13	ENST00000622353.4:ENST00000366847.9:ENST00000349556.4	protein_coding	protein_coding	protein_coding	protein_coding	16	139	2	1.47372	1.801295	2.12887	0.014478	0.00471873	0.10521	0.0600445
chr7	153413023	153413119	3682215	0	-	0.520833	(0.515,0.57]	chr7	341744	16	EXON_LNCRNA	EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	LINC01287	ENSG00000234722.5	ENST00000647863.1:ENST00000453187.2:ENST00000664249.1:ENST00000663745.1:ENST00000659532.1:ENST00000670362.1:ENST00000669043.1:ENST00000662626.1:ENST00000669109.1:ENST00000657245.1:ENST00000662979.1:ENST00000666243.1:ENST00000661522.1:ENST00000660414.1:ENST00000669159.1:ENST00000658753.1:ENST00000671302.1:ENST00000668024.1:ENST00000669370.1:ENST00000667969.1:ENST00000669818.1:ENST00000661082.1:ENST00000653989.1:ENST00000665909.1:ENST00000665005.1:ENST00000658825.1:ENST00000669410.1:ENST00000664034.1:ENST00000670343.1:ENST00000670691.1:ENST00000416982.1	lncRNA	lncRNA	lncRNA	lncRNA	14	111	2	1.59629	1.801155	2.00602	0.0274344	0.0016347	0.136554	0.0369207
chr16	30329687	30329787	6473314	0	-	0.52	(0.515,0.57]	chr16	625713	234	INTRON	INTRON	SMG1P5	ENSG00000183604.15	ENST00000529428.5:ENST00000411546.4:ENST00000691460.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	7	48	2	1.32981	1.8010950000000001	2.27238	0.0640038	0.0161808	0.199279	0.101453
chr12	50410405	50410505	5136428	0	+	0.46	(0.44,0.476]	chr12	484352	72	INTRON	INTRON	LARP4	ENSG00000161813.23	ENST00000550522.5:ENST00000293618.12:ENST00000429001.7:ENST00000398473.7:ENST00000548174.5:ENST00000548697.5:ENST00000548993.5:ENST00000522085.5:ENST00000518444.5:ENST00000551886.5:ENST00000523389.5:ENST00000518561.5:ENST00000347328.9:ENST00000550260.1:ENST00000517559.5:ENST00000552445.1	protein_coding	protein_coding	protein_coding	protein_coding	9	78	2	1.34221	1.801065	2.25992	0.0656882	0.00324123	0.181162	0.0524329
chrX	73959388	73959486	7682250	0	+	0.489796	(0.476,0.515]	chrX	786628	4	INTRON	INTRON	JPX	ENSG00000225470.8	ENST00000664637.1:ENST00000639185.1:ENST00000655090.1:ENST00000640437.1:ENST00000660546.1:ENST00000667886.1:ENST00000660840.1:ENST00000657179.1:ENST00000670506.1:ENST00000657910.1:ENST00000662120.1:ENST00000671207.1:ENST00000659254.1:ENST00000656624.1:ENST00000667573.1:ENST00000660856.1:ENST00000660836.1:ENST00000668590.1:ENST00000658649.1:ENST00000414209.6:ENST00000654137.1:ENST00000670994.1:ENST00000653479.1:ENST00000602772.5:ENST00000655879.1:ENST00000657372.1:ENST00000657096.1:ENST00000602985.6:ENST00000670685.1:ENST00000670503.1:ENST00000663027.1:ENST00000654995.1:ENST00000602895.6:ENST00000654374.1:ENST00000660087.1:ENST00000665032.1:ENST00000671336.1:ENST00000671476.1:ENST00000667057.1:ENST00000670192.1:ENST00000670464.1:ENST00000665345.1:ENST00000661546.1:ENST00000662543.1:ENST00000602938.6:ENST00000664295.1:ENST00000654005.1:ENST00000669149.1:ENST00000659852.1:ENST00000656509.1:ENST00000602294.6:ENST00000667294.1:ENST00000663470.1:ENST00000602920.6:ENST00000671021.1:ENST00000659849.1:ENST00000667937.1:ENST00000661130.1:ENST00000654196.1:ENST00000655994.1:ENST00000659373.1:ENST00000662239.1:ENST00000670805.1:ENST00000656263.1:ENST00000653069.1:ENST00000657638.1:ENST00000653808.1:ENST00000653929.1:ENST00000653885.1:ENST00000659023.1:ENST00000602546.5:ENST00000659622.1:ENST00000671518.1:ENST00000670408.1	lncRNA	lncRNA	lncRNA	lncRNA	11	94	2	1.6474	1.801045	1.95469	0.0153343	0.0115753	0.100249	0.0962115
chrX	154790122	154790212	7915450	0	-	0.344444	(0.32,0.35]	chrX	806152	1	SS3_PROX	SS3_PROX:INTRON	MPP1	ENSG00000130830.15	ENST00000369534.8:ENST00000413259.7:ENST00000439370.5:ENST00000393531.5:ENST00000453245.5:ENST00000494170.1:ENST00000462825.5:ENST00000393529.5:ENST00000475943.5:ENST00000428488.1:ENST00000488754.5:ENST00000417435.5:ENST00000488694.1:ENST00000369531.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	72	2	1.64769	1.800885	1.95408	0.0578603	0.0124054	0.167723	0.0973643
chr1	227308304	227308404	651619	0	-	0.47	(0.44,0.476]	chr1	77110	432	INTRON	INTRON	CDC42BPA	ENSG00000143776.20	ENST00000366766.8:ENST00000366769.7:ENST00000334218.9:ENST00000366767.7:ENST00000366764.8:ENST00000478573.6:ENST00000682551.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	78	2	1.63371	1.80088	1.96805	0.0271664	0.0109533	0.123904	0.0925675
chr20	56369580	56369676	7358651	0	-	0.46875	(0.44,0.476]	chr20	750332	3	UTR3	UTR3:EXON_MRNA	AURKA	ENSG00000087586.18	ENST00000395914.5:ENST00000395913.7:ENST00000312783.10:ENST00000395911.5:ENST00000395915.8:ENST00000347343.6:ENST00000371356.6:ENST00000395907.5	protein_coding	protein_coding	protein_coding	protein_coding	7	61	2	1.38039	1.80071	2.22103	0.0762718	0.00776319	0.195539	0.0787356
chr8	29056806	29056904	3726541	0	+	0.397959	(0.378,0.408]	chr8	346338	10	EXON_LNCRNA	EXON_LNCRNA:INTRON	HMBOX1:ENSG00000259366	ENSG00000147421.18:ENSG00000259366.2	ENST00000522468.1:ENST00000687917.1:ENST00000687452.1	protein_coding	nonsense_mediated_decay	protein_coding:lncRNA	nonsense_mediated_decay:lncRNA	16	141	2	1.69511	1.800635	1.90616	0.0136145	0.00266058	0.0949306	0.0476028
chr1	61154126	61154226	128113	0	+	0.4	(0.378,0.408]	chr1	14778	212	INTRON	INTRON	NFIA	ENSG00000162599.17	ENST00000371191.5:ENST00000664495.1:ENST00000476646.5:ENST00000407417.7:ENST00000479364.1:ENST00000371189.8:ENST00000670151.1:ENST00000664149.1:ENST00000662015.1:ENST00000403491.8:ENST00000371187.7:ENST00000485903.6:ENST00000371185.6:ENST00000371184.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	11	103	2	1.67073	1.800545	1.93036	0.0219426	0.00699856	0.123836	0.0718189
chr2	167871178	167871278	1258513	0	-	0.4	(0.378,0.408]	chr2	133334	8	INTRON	INTRON	B3GALT1-AS1	ENSG00000235335.3	ENST00000430546.2:ENST00000657553.1:ENST00000670221.1:ENST00000436982.2	lncRNA	lncRNA	lncRNA	lncRNA	6	53	2	1.71374	1.8005149999999999	1.88729	0.0532327	0.0274158	0.162538	0.136498
chr12	120863323	120863423	5435497	0	-	0.31	(0.28,0.32]	chr12	519663	278	INTRON	INTRON	SPPL3	ENSG00000157837.16	ENST00000353487.7:ENST00000536996.5:ENST00000543608.5:ENST00000543854.5	protein_coding	protein_coding	protein_coding	protein_coding	4	47	2	1.76293	1.8003200000000001	1.83771	0.0766478	0.0591725	0.196164	0.189982
chr16	58543384	58543484	6495477	0	-	0.31	(0.28,0.32]	chr16	628476	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CNOT1	ENSG00000125107.19	ENST00000317147.10:ENST00000569240.5:ENST00000567188.5:ENST00000566240.1:ENST00000441024.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	47	2	1.76293	1.8003200000000001	1.83771	0.0766478	0.0591725	0.196164	0.189982
chr1	954623	954723	358384	0	-	0.48	(0.476,0.515]	chr1	41287	1	SS3_PROX	SS3_PROX:INTRON	NOC2L	ENSG00000188976.11	ENST00000327044.7:ENST00000477976.5:ENST00000487214.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	9	79	2	1.78315	1.8002799999999999	1.81741	0.0215899	0.0141271	0.123836	0.0959618
chr1	54332718	54332817	463022	0	-	0.555556	(0.515,0.57]	chr1	55776	64	INTRON	INTRON	SSBP3	ENSG00000157216.16	ENST00000610401.5:ENST00000357475.9:ENST00000371319.8:ENST00000417664.7:ENST00000533946.6:ENST00000326956.12:ENST00000371320.8:ENST00000525990.1:ENST00000528787.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	52	2	1.53845	1.800255	2.06206	0.0475376	0.0135396	0.153019	0.101363
chr1	150464126	150464226	222705	0	+	0.54	(0.515,0.57]	chr1	25105	2	SS3_PROX	SS3_PROX:INTRON	RPRD2	ENSG00000163125.16	ENST00000492220.1:ENST00000369068.5:ENST00000401000.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	38	2	1.56681	1.8002099999999999	2.03361	0.064862	0.0325854	0.179394	0.145164
chr22	20102382	20102481	7478460	0	+	0.545455	(0.515,0.57]	chr22	762741	72	INTRON	INTRON	DGCR8	ENSG00000128191.16	ENST00000383024.6:ENST00000351989.8:ENST00000495826.5:ENST00000407755.1:ENST00000498171.5:ENST00000491892.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	38	2	1.56681	1.8002099999999999	2.03361	0.064862	0.0325854	0.179394	0.145164
chr12	10699371	10699465	5265754	0	-	0.43617	(0.408,0.44]	chr12	502081	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	YBX3	ENSG00000060138.13	ENST00000228251.9:ENST00000279550.11:ENST00000540447.5:ENST00000540975.5:ENST00000546164.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	72	2	1.6546400000000001	1.799975	1.94531	0.0329965	0.0136489	0.145298	0.0949306
chr6	4024563	4024663	2789730	0	+	0.42	(0.408,0.44]	chr6	263481	27	INTRON	INTRON	PRPF4B	ENSG00000112739.17	ENST00000480058.5:ENST00000337659.11	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	72	2	1.6546400000000001	1.799975	1.94531	0.0329965	0.0136489	0.145298	0.0949306
chr3	196070068	196070159	1897428	0	-	0.384615	(0.378,0.408]	chr3	189957	1	INTRON	INTRON	TFRC	ENSG00000072274.13	ENST00000420415.5:ENST00000360110.9:ENST00000392396.7	protein_coding	protein_coding	protein_coding	protein_coding	57	423	2	1.36068	1.7999749999999999	2.23927	0.00558075	3.55086e-4	0.0678323	0.0175154
chr11	2944724	2944822	4891495	0	-	0.673469	(0.57,1]	chr11	458257	4	UTR3	UTR3:EXON_MRNA	NAP1L4	ENSG00000205531.13	ENST00000620138.4:ENST00000380542.9:ENST00000469805.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	35	2	1.58776	1.79996	2.01216	0.0295652	0.0163389	0.142135	0.101571
chr16	16611777	16611877	6311980	0	+	0.3	(0.28,0.32]	chr16	604098	1118	INTRON	INTRON	ENSG00000260126	ENSG00000260126.2	ENST00000567465.2	lncRNA	lncRNA	lncRNA	lncRNA	11	122	2	1.5995	1.7999049999999999	2.00031	0.0233841	0.0110488	0.11839	0.0928193
chr12	112227020	112227120	5416149	0	-	0.43	(0.408,0.44]	chr12	517443	2	SS3_PROX	SS3_PROX:INTRON	HECTD4	ENSG00000173064.14	ENST00000550722.5:ENST00000377560.9:ENST00000682272.1:ENST00000550968.5:ENST00000547519.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	12	98	2	1.53079	1.799835	2.06888	0.0173197	0.00864911	0.112111	0.0787025
chrX	154786998	154787096	7915418	0	-	0.316327	(0.28,0.32]	chrX	806147	2	INTRON	INTRON	MPP1	ENSG00000130830.15	ENST00000369534.8:ENST00000413259.7:ENST00000439370.5:ENST00000393531.5:ENST00000453245.5:ENST00000494170.1:ENST00000462825.5:ENST00000393529.5:ENST00000475943.5:ENST00000428488.1:ENST00000488754.5:ENST00000417435.5:ENST00000488694.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	96	2	1.73163	1.799805	1.86798	0.0335733	0.0144599	0.134145	0.105124
chr9	131430759	131430855	4217338	0	+	0.5	(0.476,0.515]	chr9	386728	1	INTRON	INTRON	PRRC2B	ENSG00000288701.1	ENST00000684596.1:ENST00000683519.1:ENST00000682501.1	protein_coding	protein_coding	protein_coding	protein_coding	8	70	2	1.4553	1.799595	2.14389	0.0623645	0.00540862	0.175357	0.066545000000000007
chr22	16646967	16647067	7473820	0	+	0.33	(0.32,0.35]	chr22	762014	4	SS3_PROX	SS3_PROX:INTRON	TPTEP1	ENSG00000100181.22	ENST00000558085.6:ENST00000400593.6:ENST00000426585.5:ENST00000383140.7	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	10	100	2	1.24518	1.7995349999999999	2.35389	0.0754551	0.00241005	0.194427	0.0453511
chr8	38139529	38139621	3735029	0	+	0.347826	(0.32,0.35]	chr8	347032	6	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	ASH2L	ENSG00000129691.16	ENST00000545394.2:ENST00000343823.11:ENST00000428278.6:ENST00000521652.5:ENST00000521808.5:ENST00000520079.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	79	2	1.41804	1.79948	2.18092	0.0337299	0.0256608	0.146709	0.120491
chr2	130133557	130133656	863608	0	+	0.474747	(0.44,0.476]	chr2	96903	34	INTRON	INTRON	MED15P9	ENSG00000223760.4	ENST00000427638.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	13	111	2	1.74196	1.799455	1.85695	0.00909881	0.0088884	0.0855292	0.0797916
chr10	63344482	63344582	4634175	0	-	0.36	(0.35,0.378]	chr10	426226	754	INTRON	INTRON	JMJD1C	ENSG00000171988.20	ENST00000399262.7:ENST00000633035.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	57	2	1.49028	1.799435	2.10859	0.0590834	0.0272722	0.168067	0.136494
chr19	1423193	1423292	6995258	0	+	0.535354	(0.515,0.57]	chr19	693200	4	INTRON	INTRON	DAZAP1	ENSG00000071626.17	ENST00000336761.10:ENST00000233078.9:ENST00000592522.5:ENST00000586579.5:ENST00000587079.5:ENST00000592453.2:ENST00000589484.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	52	2	1.75372	1.799415	1.84511	0.0386904	0.0167182	0.14279	0.110511
chr9	131443784	131443884	4217472	0	+	0.56	(0.515,0.57]	chr9	386747	2	SS3_PROX	SS3_PROX:INTRON	PRRC2B	ENSG00000288701.1	ENST00000684596.1:ENST00000683519.1:ENST00000682501.1	protein_coding	protein_coding	protein_coding	protein_coding	7	52	2	1.75372	1.799415	1.84511	0.0386904	0.0167182	0.14279	0.110511
chr1	6527911	6528008	367848	0	-	0.42268	(0.408,0.44]	chr1	43189	7	INTRON	INTRON	NOL9	ENSG00000162408.11	ENST00000377705.6	protein_coding	protein_coding	protein_coding	protein_coding	10	86	2	1.69979	1.7991899999999998	1.89859	0.0310346	0.00624957	0.13151	0.0719778
chr6	124989101	124989200	2951740	0	+	0.282828	(0.28,0.32]	chr6	277678	52	INTRON	INTRON	RNF217	ENSG00000146373.17	ENST00000521654.7:ENST00000560949.5:ENST00000519565.5:ENST00000454842.2:ENST00000368414.6:ENST00000519799.5:ENST00000359704.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	11	118	2	1.75631	1.799155	1.842	0.023346	0.0101849	0.118323	0.089002
chr11	9400155	9400254	4729566	0	+	0.282828	(0.28,0.32]	chr11	437827	75	INTRON	INTRON	IPO7	ENSG00000205339.10	ENST00000379719.8:ENST00000533233.1:ENST00000527431.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	59	2	1.76048	1.7990949999999999	1.83771	0.0591725	0.0450149	0.189982	0.149888
chr16	28382143	28382238	6468498	0	-	0.452632	(0.44,0.476]	chr16	624622	10	INTRON	INTRON	EIF3CL	ENSG00000205609.13	ENST00000398944.7:ENST00000380876.5	protein_coding	protein_coding	protein_coding	protein_coding	9	80	2	1.75023	1.7990849999999998	1.84794	0.0240995	0.0127847	0.129929	0.0926667
chr6	47582764	47582864	2874629	0	+	0.41	(0.408,0.44]	chr6	272786	3	INTRON	INTRON	CD2AP	ENSG00000198087.7	ENST00000359314.5	protein_coding	protein_coding	protein_coding	protein_coding	14	103	2	1.43856	1.7989700000000002	2.15938	0.0159344	0.011260300000000001	0.109464	0.0884004
chrX	73825902	73826001	7837777	0	-	0.454545	(0.44,0.476]	chrX	799584	54	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	XIST	ENSG00000229807.13	ENST00000669898.1:ENST00000650627.1:ENST00000434839.3:ENST00000421322.3:ENST00000416330.2:ENST00000429829.6:ENST00000648829.1:ENST00000666954.1:ENST00000417942.5:ENST00000647913.2:ENST00000647696.1:ENST00000650366.1:ENST00000648607.1:ENST00000650548.1:ENST00000650186.1:ENST00000635841.2:ENST00000650637.1:ENST00000648970.1:ENST00000649757.1:ENST00000648991.1:ENST00000648091.1:ENST00000648927.2	lncRNA	lncRNA	lncRNA	lncRNA	5	44	2	1.69402	1.7989600000000001	1.9039	0.0501498	0.0456129	0.164236	0.156383
chr3	198197248	198197348	1600135	0	+	0.38	(0.378,0.408]	chr3	165892	65	INTRON	INTRON	FAM157A	ENSG00000236438.7	ENST00000634862.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	11	95	2	1.55777	1.79889	2.04001	0.0193744	0.00996995	0.119831	0.08427
chr2	28800187	28800285	725144	0	+	0.265306	[0,0.28]	chr2	83768	10	UTR3	UTR3:EXON_MRNA	PPP1CB	ENSG00000213639.10	ENST00000358506.6:ENST00000296122.10:ENST00000395366.3	protein_coding	protein_coding	protein_coding	protein_coding	69	844	2	1.726	1.79888	1.87176	0.00256686	0.00175572	0.0451226	0.0387629
chr1	151051264	151051362	553296	0	-	0.428571	(0.408,0.44]	chr1	65158	4	UTR3	UTR3:EXON_MRNA	CDC42SE1	ENSG00000197622.13	ENST00000439374.6:ENST00000540998.5:ENST00000357235.6	protein_coding	protein_coding	protein_coding	protein_coding	8	71	2	1.40374	1.79886	2.19398	0.0721345	0.0043348	0.187433	0.0600652
chr5	43290041	43290140	2614187	0	-	0.313131	(0.28,0.32]	chr5	248475	27	UTR3	UTR3:EXON_MRNA	HMGCS1	ENSG00000112972.15	ENST00000325110.11:ENST00000433297.2	protein_coding	protein_coding	protein_coding	protein_coding	39	381	2	1.39359	1.79878	2.20397	0.00900487	0.00104657	0.0851009	0.0294739
chr11	70435833	70435923	4822011	0	+	0.666667	(0.57,1]	chr11	449686	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CTTN	ENSG00000085733.16	ENST00000346329.7:ENST00000301843.13:ENST00000376561.7:ENST00000393747.3:ENST00000529736.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	37	2	1.37384	1.79875	2.22366	0.0766386	0.00344378	0.196164	0.0539802
chr7	75449215	75449315	3558559	0	-	0.44	(0.408,0.44]	chr7	331545	66	INTRON	INTRON	POM121C	ENSG00000272391.6	ENST00000615331.5:ENST00000398379.2	protein_coding	protein_coding	protein_coding	protein_coding	6	51	2	1.6546400000000001	1.798685	1.94273	0.0456237	0.0329965	0.149888	0.145298
chr17	47147052	47147151	6788954	0	-	0.424242	(0.408,0.44]	chr17	669573	27	INTRON	INTRON	CDC27	ENSG00000004897.12	ENST00000066544.8:ENST00000531206.5:ENST00000533415.5:ENST00000527547.5:ENST00000526866.5:ENST00000525495.6:ENST00000574304.5:ENST00000575830.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	12	91	2	1.36707	1.79865	2.23023	0.027567	0.0087201	0.137011	0.0788605
chr3	183744387	183744486	1580762	0	+	0.434343	(0.408,0.44]	chr3	163062	72	INTRON	INTRON	YEATS2	ENSG00000163872.16	ENST00000305135.10	protein_coding	protein_coding	protein_coding	protein_coding	7	62	2	1.58763	1.79862	2.00961	0.0639217	0.00931007	0.177824	0.0855292
chr15	78874220	78874320	6069551	0	+	0.39	(0.378,0.408]	chr15	578182	3	SS5_PROX	SS5_PROX:INTRON	MORF4L1	ENSG00000185787.15	ENST00000379535.8:ENST00000559697.5:ENST00000331268.9:ENST00000557961.5:ENST00000559930.5:ENST00000426013.7:ENST00000558746.5:ENST00000558893.5:ENST00000558830.5:ENST00000558522.5:ENST00000559619.5:ENST00000559345.5:ENST00000561171.5:ENST00000558502.5:ENST00000559258.5:ENST00000559690.5:ENST00000559158.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	46	2	1.59317	1.798575	2.00398	0.0603812	0.0393906	0.19151	0.143072
chr7	105284242	105284342	3602855	0	-	0.4	(0.378,0.408]	chr7	336144	150	INTRON	INTRON	SRPK2	ENSG00000135250.17	ENST00000393651.8:ENST00000489828.5:ENST00000482897.5:ENST00000460391.5:ENST00000462282.5:ENST00000465112.5:ENST00000482862.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	46	2	1.59317	1.798575	2.00398	0.0603812	0.0393906	0.19151	0.143072
chr11	68096022	68096121	4972342	0	-	0.474747	(0.44,0.476]	chr11	469432	63	INTRON	INTRON	CHKA	ENSG00000110721.12	ENST00000265689.9:ENST00000356135.9:ENST00000531341.1	protein_coding	protein_coding	protein_coding	protein_coding	17	142	2	1.32379	1.7984399999999998	2.27309	0.0320814	6.781e-4	0.132091	0.0236375
chr5	54025108	54025208	2618055	0	-	0.38	(0.378,0.408]	chr5	248835	1131	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	60	2	1.70953	1.79841	1.88729	0.0532327	0.0190881	0.162538	0.119229
chr7	75461109	75461209	3558678	0	-	0.39	(0.378,0.408]	chr7	331545	185	INTRON	INTRON	POM121C	ENSG00000272391.6	ENST00000615331.5:ENST00000398379.2	protein_coding	protein_coding	protein_coding	protein_coding	10	84	2	1.64762	1.79834	1.94906	0.023282	0.0136375	0.118176	0.101785
chr17	49048356	49048455	6625137	0	+	0.474747	(0.44,0.476]	chr17	646677	16	INTRON	INTRON	IGF2BP1	ENSG00000159217.10	ENST00000290341.8:ENST00000431824.2	protein_coding	protein_coding	protein_coding	protein_coding	9	78	2	1.62674	1.798245	1.96975	0.0253995	0.0123514	0.133676	0.0914865
chr7	127361177	127361276	3633925	0	-	0.454545	(0.44,0.476]	chr7	337748	15	EXON_MRNA	EXON_MRNA:INTRON	ZNF800:ENSG00000280347	ENSG00000048405.11:ENSG00000280347.1	ENST00000485577.1:ENST00000624029.1	protein_coding	TEC	protein_coding:TEC	TEC:processed_transcript	9	78	2	1.62674	1.798245	1.96975	0.0253995	0.0123514	0.133676	0.0914865
chr18	36161504	36161602	6891763	0	+	0.387755	(0.378,0.408]	chr18	683062	1	INTRON	INTRON	ELP2	ENSG00000134759.14	ENST00000351393.10:ENST00000442325.6:ENST00000358232.11:ENST00000423854.6:ENST00000539560.5:ENST00000350494.10:ENST00000542824.5:ENST00000540799.1:ENST00000542050.5:ENST00000543861.5:ENST00000540766.5:ENST00000541294.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	76	2	1.43345	1.7982399999999998	2.16303	0.0254532	0.0252473	0.133676	0.12011
chr5	131779433	131779533	2720569	0	-	0.45	(0.44,0.476]	chr5	255730	344	INTRON	INTRON	FNIP1	ENSG00000217128.13	ENST00000510461.6:ENST00000307954.12:ENST00000307968.11:ENST00000511848.1	protein_coding	protein_coding	protein_coding	protein_coding	14	115	2	1.76195	1.79821	1.83447	0.0252608	0.00300648	0.12011	0.0506263
chr2	131211483	131211583	865473	0	+	0.33	(0.32,0.35]	chr2	97181	3	SS5_PROX	SS5_PROX:INTRON	PLEKHB2:POTEE	ENSG00000115762.17:ENSG00000188219.16	ENST00000404460.5:ENST00000683005.1	protein_coding	protein_coding	protein_coding	protein_coding	12	120	2	1.61555	1.79801	1.98047	0.0165587	0.00919797	0.110511	0.0815812
chr2	167913952	167914052	1258942	0	-	0.42	(0.408,0.44]	chr2	133340	128	INTRON	INTRON	B3GALT1-AS1	ENSG00000235335.3	ENST00000430546.2:ENST00000657553.1:ENST00000670221.1:ENST00000436982.2	lncRNA	lncRNA	lncRNA	lncRNA	14	119	2	1.43261	1.7979	2.16319	0.0286309	0.00180756	0.126958	0.0393572
chr4	66341	66440	1905420	0	+	0.353535	(0.35,0.378]	chr4	191003	58	INTRON	INTRON	ZNF595	ENSG00000272602.6	ENST00000608255.2:ENST00000609518.5:ENST00000509152.3:ENST00000610261.6	protein_coding	protein_coding	protein_coding	protein_coding	9	85	2	1.44343	1.79786	2.15229	0.0514088	0.00545124	0.158464	0.0669407
chr7	75366948	75367048	3337738	0	+	0.52	(0.515,0.57]	chr7	310751	3	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	STAG3L1	ENSG00000205583.14	ENST00000619870.4:ENST00000687422.1:ENST00000456374.2:ENST00000404291.3	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	7	53	2	1.77795	1.797695	1.81744	0.031028	0.0222234	0.143457	0.116128
chr16	15958087	15958187	6307843	0	+	0.43	(0.408,0.44]	chr16	603510	79	INTRON	INTRON	ABCC1	ENSG00000103222.20	ENST00000574224.2:ENST00000678422.1:ENST00000677164.1:ENST00000399408.7:ENST00000572882.3:ENST00000399410.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	45	2	1.58763	1.7976550000000002	2.00768	0.0639217	0.035843	0.177824	0.152216
chr5	98922942	98923041	2684014	0	-	0.363636	(0.35,0.378]	chr5	253957	175	INTRON	INTRON	CHD1	ENSG00000153922.11	ENST00000614616.5:ENST00000284049.7	protein_coding	protein_coding	protein_coding	protein_coding	16	139	2	1.07076	1.79763	2.5245	0.0712903	5.08877e-4	0.185716	0.0202389
chr7	140475435	140475535	3661596	0	-	0.46	(0.44,0.476]	chr7	339947	1	SS3_PROX	SS3_PROX:INTRON	MKRN1	ENSG00000133606.11	ENST00000255977.7:ENST00000475010.5:ENST00000495305.5:ENST00000474576.5:ENST00000480552.5:ENST00000496169.5:ENST00000443720.6:ENST00000471104.5:ENST00000467513.5:ENST00000494939.1:ENST00000498535.1:ENST00000473444.1:ENST00000475180.5:ENST00000481705.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	44	2	1.75627	1.7976299999999998	1.83899	0.0589734	0.0380723	0.167915	0.157702
chr21	34109243	34109343	7401452	0	+	0.48	(0.476,0.515]	chr21	753975	31	INTRON	INTRON	MRPS6	ENSG00000243927.6	ENST00000488492.5:ENST00000477091.5:ENST00000399312.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	53	2	1.52615	1.7975649999999999	2.06898	0.0739267	0.0137491	0.190914	0.10247
chr1	167257719	167257819	245220	0	+	0.37	(0.35,0.378]	chr1	29257	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	POU2F1	ENSG00000143190.23	ENST00000559038.5:ENST00000367866.7:ENST00000557909.5:ENST00000271411.8:ENST00000429375.6:ENST00000560232.6:ENST00000442313.5:ENST00000367865.5:ENST00000492850.5:ENST00000541643.7:ENST00000648671.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	56	2	1.77736	1.797515	1.81767	0.0640429	0.0225073	0.177882	0.124921
chr19	28533700	28533800	7166432	0	-	0.29	(0.28,0.32]	chr19	724189	655	INTRON	INTRON	ENSG00000283403:ENSG00000267243	ENSG00000283403.1:ENSG00000267243.6	ENST00000592347.5:ENST00000593065.5	lncRNA	lncRNA	lncRNA	lncRNA	14	140	2	1.46234	1.79746	2.13258	0.0192738	0.00884547	0.119831	0.0794248
chr2	218595242	218595339	1018471	0	+	0.42268	(0.408,0.44]	chr2	108484	11	UTR3	UTR3:EXON_MRNA	CNOT9	ENSG00000144580.14	ENST00000542068.5:ENST00000273064.11	protein_coding	protein_coding	protein_coding	protein_coding	11	96	2	1.61024	1.7973849999999998	1.98453	0.0200746	0.00766144	0.121073	0.075364
chr22	49508484	49508584	7601164	0	-	0.5	(0.476,0.515]	chr22	778566	669	INTRON	INTRON	MIR3667HG	ENSG00000188511.13	ENST00000414287.5:ENST00000416411.1	lncRNA	lncRNA	lncRNA	lncRNA	6	53	2	1.79187	1.797355	1.80284	0.0362169	0.033161	0.145899	0.138959
chr8	23020620	23020717	3923448	0	-	0.443299	(0.44,0.476]	chr8	359060	6	UTR3	UTR3:EXON_MRNA	TNFRSF10B	ENSG00000120889.13	ENST00000276431.9:ENST00000523752.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	22	173	2	1.48781	1.79735	2.10689	0.00843337	0.00220219	0.0826854	0.0417893
chr7	76619526	76619625	3341064	0	+	0.444444	(0.44,0.476]	chr7	311176	35	INTRON	INTRON	ENSG00000205485	ENSG00000205485.13	ENST00000418663.5:ENST00000450661.1:ENST00000423084.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	11	98	2	1.66775	1.797135	1.92652	0.0219883	0.00669501	0.123836	0.0707084
chr8	26315006	26315106	3716331	0	+	0.36	(0.35,0.378]	chr8	345372	100	INTRON	INTRON	PPP2R2A	ENSG00000221914.11	ENST00000380737.8:ENST00000520329.5:ENST00000518254.5:ENST00000524169.5:ENST00000518397.5:ENST00000522535.5:ENST00000665949.1:ENST00000522150.5:ENST00000523473.5:ENST00000521095.5:ENST00000660435.1:ENST00000523925.5:ENST00000524099.5:ENST00000315985.7:ENST00000519636.5:ENST00000522482.5:ENST00000521557.5:ENST00000519439.5:ENST00000521484.5:ENST00000523964.5:ENST00000667651.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	48	2	1.43253	1.7971150000000002	2.1617	0.0771502	0.0486238	0.196285	0.173047
chr9	4849750	4849850	4095447	0	+	0.4	(0.378,0.408]	chr9	373211	2	SS5_PROX	SS5_PROX:INTRON	RCL1	ENSG00000120158.12	ENST00000381750.9:ENST00000442869.5:ENST00000381730.5:ENST00000381728.5:ENST00000448872.6	protein_coding	protein_coding	protein_coding	protein_coding	5	40	2	1.45712	1.797075	2.13703	0.0797592	0.0597975	0.19979	0.189982
chr19	15319138	15319238	7147272	0	-	0.51	(0.476,0.515]	chr19	721965	388	INTRON	INTRON	BRD4	ENSG00000141867.19	ENST00000679869.1:ENST00000360016.9:ENST00000594841.5:ENST00000597315.5:ENST00000601941.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	101	2	1.32381	1.796975	2.27014	0.0471595	0.00172923	0.152472	0.0384338
chr11	9300300	9300400	4909293	0	-	0.34	(0.32,0.35]	chr11	460162	2	INTRON	INTRON	TMEM41B	ENSG00000166471.11	ENST00000524543.5:ENST00000528080.6:ENST00000299596.8:ENST00000611268.4:ENST00000527813.5:ENST00000533723.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	67	2	1.65179	1.7969050000000002	1.94202	0.0486128	0.0245569	0.153946	0.131869
chr5	181315953	181316053	2563760	0	+	0.46	(0.44,0.476]	chr5	245362	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ENSG00000238035	ENSG00000238035.8	ENST00000499986.8	lncRNA	lncRNA	lncRNA	lncRNA	10	86	2	1.62554	1.796795	1.96805	0.0212701	0.0109533	0.113328	0.0925675
chr22	15787744	15787839	7472920	0	+	0.421053	(0.408,0.44]	chr22	761926	7	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	DUXAP8	ENSG00000206195.11	ENST00000413768.5:ENST00000437781.5:ENST00000383038.7:ENST00000661115.1:ENST00000603308.2:ENST00000447898.5:ENST00000661156.1	lncRNA	lncRNA	lncRNA	lncRNA	6	54	2	1.66104	1.796735	1.93243	0.0441194	0.0349715	0.162255	0.13747500000000001
chr16	30251124	30251224	6472620	0	-	0.5	(0.476,0.515]	chr16	625566	49	INTRON	INTRON	NPIPB13	ENSG00000198064.14	ENST00000568053.5	protein_coding	protein_coding	protein_coding	protein_coding	14	114	2	1.19704	1.79671	2.39638	0.0540647	9.14515e-4	0.164573	0.027804
chr15	72479409	72479509	6059211	0	+	0.52	(0.515,0.57]	chr15	576852	40	INTRON	INTRON	ARIH1	ENSG00000166233.15	ENST00000379887.9:ENST00000570085.5:ENST00000564062.1:ENST00000567762.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	13	94	2	1.76095	1.796615	1.83228	0.00854719	0.00781632	0.0788458	0.0780217
chr15	20418712	20418812	6118034	0	-	0.51	(0.476,0.515]	chr15	582352	96	INTRON	INTRON	HERC2P3	ENSG00000180229.12	ENST00000426501.5:ENST00000428453.5:ENST00000437318.5:ENST00000430598.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	17	142	2	1.51111	1.7966	2.08209	0.013526	0.00240759	0.101363	0.0441686
chr5	146491120	146491220	2515959	0	+	0.44	(0.408,0.44]	chr5	240369	71	INTRON	INTRON	TCERG1	ENSG00000113649.13	ENST00000296702.9:ENST00000679501.2:ENST00000394421.7:ENST00000549332.1:ENST00000515203.5:ENST00000506524.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	14	119	2	1.58342	1.7965149999999999	2.00961	0.0121219	0.00931007	0.090965	0.0855292
chr17	31952176	31952275	6595829	0	+	0.474747	(0.44,0.476]	chr17	641554	41	INTRON	INTRON	SUZ12	ENSG00000178691.11	ENST00000322652.10:ENST00000580398.1	protein_coding	protein_coding	protein_coding	protein_coding	7	58	2	1.38203	1.7964099999999998	2.21079	0.058781	0.0194581	0.167915	0.119831
chr1	29158081	29158180	410198	0	-	0.535354	(0.515,0.57]	chr1	49392	28	INTRON	INTRON	SRSF4	ENSG00000116350.18	ENST00000373795.7:ENST00000691479.1:ENST00000634348.1:ENST00000466448.4:ENST00000622143.1:ENST00000497015.5:ENST00000605204.1:ENST00000477193.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	68	2	1.18251	1.7963649999999998	2.41022	0.0690131	0.00332441	0.184298	0.0528673
chrX	74266697	74266796	7841345	0	-	0.484848	(0.476,0.515]	chrX	799728	43	INTRON	INTRON	FTX	ENSG00000230590.12	ENST00000603672.5:ENST00000430772.6:ENST00000602776.6:ENST00000638681.1:ENST00000652319.1:ENST00000661133.1:ENST00000652071.1:ENST00000602812.6:ENST00000651703.1:ENST00000653018.1:ENST00000658448.1:ENST00000662240.1:ENST00000652527.1:ENST00000651451.1:ENST00000657611.1:ENST00000660481.1:ENST00000659574.1:ENST00000661084.1:ENST00000662494.1:ENST00000670936.1:ENST00000602420.6:ENST00000658203.1:ENST00000638985.1:ENST00000691187.1:ENST00000603037.2:ENST00000687056.1:ENST00000654870.2:ENST00000652540.1:ENST00000652331.2:ENST00000652013.1:ENST00000657070.1:ENST00000665069.1:ENST00000651936.1:ENST00000652496.1:ENST00000653874.2:ENST00000661335.1:ENST00000664123.1:ENST00000658439.1:ENST00000666535.1:ENST00000652970.1:ENST00000423992.3:ENST00000665313.2:ENST00000651140.1:ENST00000660100.1:ENST00000693483.1:ENST00000656041.1:ENST00000657327.1:ENST00000664343.1:ENST00000656977.1:ENST00000671343.1:ENST00000659407.1:ENST00000671067.1:ENST00000660829.1:ENST00000671385.1	lncRNA	lncRNA	lncRNA	lncRNA	7	61	2	1.53534	1.79624	2.05714	0.0476737	0.0156961	0.170116	0.101453
chr1	182854777	182854877	273137	0	+	0.41	(0.408,0.44]	chr1	31889	2	INTRON	INTRON	DHX9	ENSG00000135829.17	ENST00000367549.4:ENST00000479271.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	63	2	1.7743	1.7959450000000001	1.81759	0.0316273	0.0244755	0.144405	0.12011
chr1	50781809	50781909	450468	0	-	0.32	(0.28,0.32]	chr1	54249	367	INTRON	INTRON	FAF1	ENSG00000185104.21	ENST00000396153.7:ENST00000487898.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	72	2	1.49395	1.795945	2.09794	0.0423482	0.0340483	0.161744	0.134863
chr21	37462798	37462898	7407191	0	+	0.43	(0.408,0.44]	chr21	754898	61	INTRON	INTRON	DYRK1A	ENSG00000157540.22	ENST00000646523.1:ENST00000647425.1:ENST00000647188.2:ENST00000647504.1:ENST00000644942.1:ENST00000338785.8:ENST00000643624.1:ENST00000643551.1:ENST00000426672.6:ENST00000398960.7:ENST00000646548.1:ENST00000645424.1:ENST00000643854.1:ENST00000455097.6:ENST00000642309.1:ENST00000645774.1:ENST00000398956.2	protein_coding	protein_coding	protein_coding	protein_coding	6	44	2	1.40381	1.79594	2.18807	0.0708044	0.0521927	0.184528	0.177259
chr17	50747202	50747300	6627266	0	+	0.336735	(0.32,0.35]	chr17	647245	1	INTRON	INTRON	LUC7L3	ENSG00000108848.16	ENST00000393227.6:ENST00000505658.6:ENST00000240304.5:ENST00000508482.5:ENST00000504065.5:ENST00000509487.1:ENST00000511974.5:ENST00000513969.5:ENST00000503728.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	91	2	1.36759	1.7959399999999999	2.22429	0.0294508	0.0226421	0.142135	0.117557
chr3	9431123	9431220	1359232	0	+	0.28866000000000003	(0.28,0.32]	chr3	142700	4	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	SETD5	ENSG00000168137.20	ENST00000402198.7:ENST00000431285.5:ENST00000478475.5:ENST00000415650.5:ENST00000682536.1:ENST00000663774.1:ENST00000665872.1:ENST00000666307.1:ENST00000693430.1:ENST00000691925.1:ENST00000684606.1:ENST00000691175.1:ENST00000688835.1:ENST00000683262.1:ENST00000443339.5:ENST00000406341.5:ENST00000670063.1:ENST00000691299.1:ENST00000684055.1:ENST00000407969.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	92	2	1.33232	1.795855	2.25939	0.039862	0.021772	0.161534	0.11491
chr7	123722620	123722720	3632397	0	-	0.5	(0.476,0.515]	chr7	337581	130	INTRON	INTRON	WASL	ENSG00000106299.8	ENST00000223023.5	protein_coding	protein_coding	protein_coding	protein_coding	15	126	2	1.68084	1.795855	1.91087	0.0172143	0.00255225	0.104099	0.0466386
chr11	63688170	63688270	4799980	0	+	0.4	(0.378,0.408]	chr11	444936	60	INTRON	INTRON	RTN3	ENSG00000133318.14	ENST00000341307.6:ENST00000356000.7:ENST00000542238.5:ENST00000538995.1:ENST00000339997.8:ENST00000540798.5:ENST00000537981.5:ENST00000377819.10:ENST00000536011.5:ENST00000543123.1:ENST00000543552.5:ENST00000545432.5:ENST00000338850.5:ENST00000354497.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	83	2	1.28658	1.795785	2.30499	0.0499541	0.00683258	0.17488	0.0713163
chr4	70952902	70953001	1971013	0	+	0.373737	(0.35,0.378]	chr4	197584	17	INTRON	INTRON	MOB1B	ENSG00000173542.9	ENST00000502869.5:ENST00000509041.5:ENST00000309395.7:ENST00000396051.2:ENST00000511449.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	67	2	1.31002	1.7956349999999999	2.28125	0.0562395	0.0182271	0.184114	0.107842
chr1	16625043	16625120	383619	0	-	0.571429	(0.57,1]	chr1	45178	2	INTRON	INTRON	CROCCP2	ENSG00000215908.10	ENST00000639481.1:ENST00000639594.1:ENST00000640476.1:ENST00000639456.1:ENST00000412962.4	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	20	79	2	1.24046	1.79562	2.35078	0.0238643	4.76857e-4	0.129075	0.0202392
chr7	75463108	75463208	3558698	0	-	0.49	(0.476,0.515]	chr7	331545	205	INTRON	INTRON	POM121C	ENSG00000272391.6	ENST00000615331.5:ENST00000398379.2	protein_coding	protein_coding	protein_coding	protein_coding	5	44	2	1.52615	1.7955299999999998	2.06491	0.0739267	0.0304733	0.190914	0.143385
chr15	99637568	99637668	6114868	0	+	0.39	(0.378,0.408]	chr15	582076	40	INTRON	INTRON	MEF2A	ENSG00000068305.18	ENST00000560493.5:ENST00000354410.9:ENST00000558812.5:ENST00000558856.5:ENST00000685785.1:ENST00000559036.5:ENST00000557785.5:ENST00000558983.5:ENST00000557942.6:ENST00000338042.11:ENST00000558049.5:ENST00000449277.6:ENST00000690055.1:ENST00000691492.1:ENST00000686611.1:ENST00000559903.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	10	88	2	1.64059	1.795425	1.95026	0.0181131	0.0138007	0.114853	0.095051
chr7	75452414	75452514	3558591	0	-	0.38	(0.378,0.408]	chr7	331545	98	INTRON	INTRON	POM121C	ENSG00000272391.6	ENST00000615331.5:ENST00000398379.2	protein_coding	protein_coding	protein_coding	protein_coding	11	98	2	1.42554	1.79542	2.1653	0.0425654	0.00289537	0.148082	0.0494641
chrX	301198	301296	7605470	0	+	0.571429	(0.57,1]	chrX	779420	20	UTR3	UTR3:EXON_MRNA	PLCXD1	ENSG00000182378.15	ENST00000399012.6:ENST00000381657.8	protein_coding	protein_coding	protein_coding	protein_coding	8	35	2	1.42298	1.795385	2.16779	0.0510995	0.00900694	0.176696	0.0803518
chr18	56633547	56633647	6979851	0	-	0.44	(0.408,0.44]	chr18	690555	67	INTRON	INTRON	TXNL1	ENSG00000091164.13	ENST00000217515.11:ENST00000590954.5:ENST00000587807.5:ENST00000586262.5:ENST00000587613.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	52	2	1.74775	1.79538	1.84301	0.0735403	0.0174311	0.190238	0.112689
chr2	55039217	55039316	1121297	0	-	0.252525	[0,0.28]	chr2	120163	106	INTRON	INTRON	RTN4	ENSG00000115310.19	ENST00000404909.5:ENST00000394611.6:ENST00000317610.11:ENST00000357732.8:ENST00000337526.11:ENST00000357376.7:ENST00000405240.5:ENST00000438462.1:ENST00000427710.5	protein_coding	protein_coding	protein_coding	protein_coding	15	159	2	1.43355	1.7953299999999999	2.15711	0.0197582	0.0161128	0.120363	0.101453
chr1	12443462	12443562	30444	0	+	0.33	(0.32,0.35]	chr1	3762	263	INTRON	INTRON	VPS13D	ENSG00000048707.15	ENST00000620676.6:ENST00000613099.4:ENST00000011700.10:ENST00000646411.1:ENST00000543710.5:ENST00000645371.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	43	2	1.77704	1.79516	1.81328	0.0719969	0.0615716	0.193423	0.187322
chr22	20529844	20529944	7479573	0	+	0.5	(0.476,0.515]	chr22	762964	51	INTRON	INTRON	MED15	ENSG00000099917.17	ENST00000445987.5:ENST00000444094.5:ENST00000414658.5:ENST00000486656.5:ENST00000433831.5:ENST00000432052.5:ENST00000292733.11:ENST00000263205.11:ENST00000477824.5:ENST00000406969.5:ENST00000382974.6:ENST00000441501.5:ENST00000438962.1:ENST00000445189.5:ENST00000451058.5:ENST00000473028.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	54	2	1.75142	1.79511	1.8388	0.0564473	0.0259024	0.184423	0.121522
chr16	85598121	85598221	6415813	0	+	0.39	(0.378,0.408]	chr16	615470	414	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	18	162	2	1.48716	1.7950650000000001	2.10297	0.0151021	0.00186664	0.108435	0.0390476
chr11	85661405	85661504	5013446	0	-	0.282828	(0.28,0.32]	chr11	472883	38	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	CREBZF	ENSG00000137504.15	ENST00000682836.1:ENST00000527447.2:ENST00000490820.2:ENST00000528561.5:ENST00000260058.9:ENST00000531515.5:ENST00000534224.1:ENST00000525639.1:ENST00000527529.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	111	2	1.68776	1.795065	1.90237	0.0272985	0.0104138	0.123904	0.0901622
chr16	4854646	4854744	6283365	0	+	0.387755	(0.378,0.408]	chr16	601542	11	INTRON	INTRON	UBN1	ENSG00000118900.15	ENST00000592120.5:ENST00000262376.11:ENST00000590769.5:ENST00000396658.8	protein_coding	protein_coding	protein_coding	protein_coding	8	72	2	1.63458	1.7949600000000001	1.95534	0.0573057	0.00731058	0.167723	0.076234
chr7	97870409	97870505	3579377	0	-	0.28125	(0.28,0.32]	chr7	333301	2	INTRON	INTRON	ASNS:ENSG00000284707	ENSG00000070669.17:ENSG00000284707.2	ENST00000394308.8:ENST00000641784.1:ENST00000641390.1:ENST00000175506.8:ENST00000394309.7:ENST00000437628.5:ENST00000641315.1:ENST00000422745.5:ENST00000455086.5:ENST00000444334.5:ENST00000442734.5:ENST00000437657.5:ENST00000453600.5:ENST00000451771.5:ENST00000414884.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	12	118	2	1.72306	1.79495	1.86684	0.0605813	0.00659698	0.171122	0.0737999
chr2	172605369	172605469	920403	0	+	0.43	(0.408,0.44]	chr2	101391	95	UTR3	UTR3:EXON_MRNA	PDK1	ENSG00000152256.14	ENST00000282077.8	protein_coding	protein_coding	protein_coding	protein_coding	16	129	2	1.16962	1.79491	2.4202	0.044769	0.00112962	0.163255	0.0307488
chr7	150327083	150327178	3446959	0	+	0.305263	(0.28,0.32]	chr7	321724	7	INTRON	INTRON	ZBED6CL:LRRC61	ENSG00000188707.7:ENSG00000127399.15	ENST00000343855.6:ENST00000463441.5:ENST00000323078.7:ENST00000493307.1:ENST00000359623.9	protein_coding	protein_coding	protein_coding:transcribed_unitary_pseudogene	protein_coding:processed_transcript	9	96	2	1.27925	1.7949000000000002	2.31055	0.0642509	0.00834688	0.19963	0.0774402
chr1	45677291	45677391	440495	0	-	0.42	(0.408,0.44]	chr1	53361	157	INTRON	INTRON	GPBP1L1	ENSG00000159592.11	ENST00000290795.7:ENST00000355105.8:ENST00000488278.5:ENST00000480941.1:ENST00000480083.5:ENST00000493083.5:ENST00000460859.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	70	2	1.66104	1.794875	1.92871	0.0349715	0.0127189	0.13747500000000001	0.0986242
chr18	2680721	2680820	6865115	0	+	0.363636	(0.35,0.378]	chr18	679964	62	INTRON	INTRON	SMCHD1	ENSG00000101596.17	ENST00000320876.11:ENST00000688342.1:ENST00000684915.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	74	2	1.71241	1.794835	1.87726	0.0297629	0.019274	0.12908	0.119831
chr7	102393384	102393483	3371374	0	+	0.474747	(0.44,0.476]	chr7	315446	129	INTRON	INTRON	PRKRIP1	ENSG00000128563.13	ENST00000477886.5:ENST00000469763.5:ENST00000482549.5:ENST00000496391.5:ENST00000482465.5:ENST00000462601.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	53	2	1.55662	1.7946399999999998	2.03266	0.0688347	0.0155853	0.184298	0.109411
chr4	78913903	78914002	1982785	0	+	0.262626	[0,0.28]	chr4	198565	20	UTR3	UTR3:EXON_MRNA	BMP2K	ENSG00000138756.19	ENST00000502613.3	protein_coding	protein_coding	protein_coding	protein_coding	8	103	2	1.68871	1.79453	1.90035	0.0406982	0.0173564	0.1451	0.112318
chr3	9399372	9399472	1358901	0	+	0.42	(0.408,0.44]	chr3	142655	10	INTRON	INTRON	SETD5	ENSG00000168137.20	ENST00000402198.7:ENST00000431285.5:ENST00000683012.1:ENST00000463180.5:ENST00000478475.5:ENST00000415650.5:ENST00000682536.1:ENST00000663774.1:ENST00000665872.1:ENST00000666307.1:ENST00000693430.1:ENST00000691925.1:ENST00000684606.1:ENST00000691175.1:ENST00000688835.1:ENST00000683262.1:ENST00000443339.5:ENST00000406341.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	92	2	1.74367	1.7944149999999999	1.84516	0.0193431	0.00902611	0.108861	0.0851577
chr15	59124877	59124961	6040212	0	+	0.464286	(0.44,0.476]	chr15	575105	1	UTR3	UTR3:EXON_MRNA	CCNB2	ENSG00000157456.8	ENST00000288207.7:ENST00000559622.5:ENST00000621385.1	protein_coding	protein_coding	protein_coding	protein_coding	12	101	2	1.68545	1.79428	1.90311	0.0322071	0.00335678	0.132543	0.0531823
chr2	189450309	189450408	952708	0	+	0.444444	(0.44,0.476]	chr2	103636	11	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	WDR75	ENSG00000115368.10	ENST00000436347.5:ENST00000472286.5:ENST00000475596.1:ENST00000314761.9:ENST00000427960.5:ENST00000631047.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	82	2	1.41212	1.7941600000000002	2.1762	0.0358041	0.0092251	0.138791	0.0855292
chr8	31058371	31058447	3728177	0	+	0.302632	(0.28,0.32]	chr8	346525	1	UTR5	UTR5:EXON_MRNA	WRN	ENSG00000165392.11	ENST00000650667.1:ENST00000298139.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	14	140	2	1.49995	1.79399	2.08803	0.0166615	0.0103533	0.110511	0.085045
chr3	152268900	152268996	1534980	0	+	0.510417	(0.476,0.515]	chr3	159974	10	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	MBNL1	ENSG00000152601.18	ENST00000477171.1:ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000461436.1:ENST00000495875.6:ENST00000324210.10:ENST00000493459.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	79	2	1.45223	1.79398	2.13573	0.0284116	0.0119549	0.138377	0.0899583
chr10	24715573	24715672	4581865	0	-	0.363636	(0.35,0.378]	chr10	422204	8	INTRON	INTRON	ARHGAP21	ENSG00000107863.20	ENST00000612832.4:ENST00000396432.7:ENST00000376410.7:ENST00000446003.5:ENST00000476499.1:ENST00000416305.1:ENST00000472150.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	55	2	1.54563	1.793935	2.04224	0.046845	0.0363073	0.167716	0.138959
chr3	32730942	32731041	1393583	0	+	0.363636	(0.35,0.378]	chr3	145908	27	INTRON	INTRON	CNOT10	ENSG00000182973.20	ENST00000331889.10:ENST00000328834.10:ENST00000435630.5:ENST00000454516.7:ENST00000416457.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	55	2	1.54563	1.793935	2.04224	0.046845	0.0363073	0.167716	0.138959
chrX	41161299	41161398	7644835	0	+	0.353535	(0.35,0.378]	chrX	782303	79	INTRON	INTRON	USP9X	ENSG00000124486.14	ENST00000324545.9:ENST00000378308.7	protein_coding	protein_coding	protein_coding	protein_coding	6	55	2	1.54563	1.793935	2.04224	0.046845	0.0363073	0.167716	0.138959
chr15	41291414	41291514	6004462	0	+	0.37	(0.35,0.378]	chr15	571266	6	INTRON	INTRON	OIP5-AS1	ENSG00000247556.6	ENST00000558945.5:ENST00000500949.6:ENST00000561275.5:ENST00000560706.5:ENST00000501665.2	lncRNA	lncRNA	lncRNA	lncRNA	11	101	2	1.74826	1.79388	1.8395	0.0279529	0.00629232	0.124524	0.0722266
chr1	16624867	16624967	383617	0	-	0.44	(0.408,0.44]	chr1	45177	4	SS3_PROX	SS3_PROX:INTRON	CROCCP2	ENSG00000215908.10	ENST00000639481.1:ENST00000639594.1:ENST00000640476.1:ENST00000639456.1:ENST00000412962.4	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	10	85	2	1.77749	1.79383	1.81017	0.0217525	0.0104439	0.11491	0.0902734
chr17	35594764	35594863	6599609	0	+	0.353535	(0.35,0.378]	chr17	642232	3	INTRON	INTRON	AP2B1	ENSG00000006125.18	ENST00000589774.5:ENST00000616784.4:ENST00000621914.4:ENST00000620039.4:ENST00000616681.4:ENST00000621668.4:ENST00000610402.5:ENST00000612035.4:ENST00000591610.5:ENST00000590538.5:ENST00000614600.4:ENST00000590432.5:ENST00000612116.5:ENST00000618940.4:ENST00000588093.1:ENST00000592167.5:ENST00000593014.3:ENST00000628168.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	48	2	1.71046	1.793815	1.87717	0.0555068	0.0441269	0.165463	0.162255
chr1	28509542	28509633	57209	0	+	0.241758	[0,0.28]	chr1	7388	8	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:INTRON	RCC1:SNHG3	ENSG00000180198.17:ENSG00000242125.3	ENST00000398958.6:ENST00000649185.1:ENST00000413987.1:ENST00000427469.5:ENST00000683442.1:ENST00000434290.6:ENST00000373833.10:ENST00000437681.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	13	162	2	1.51983	1.7938100000000001	2.06779	0.026672	0.0096412	0.123349	0.0870233
chr5	134907567	134907664	2491736	0	+	0.329897	(0.32,0.35]	chr5	238078	20	INTRON	INTRON	PCBD2	ENSG00000132570.15	ENST00000512783.5:ENST00000254908.11:ENST00000504352.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	54	2	1.77409	1.793685	1.81328	0.0615716	0.0414296	0.193423	0.146067
chrX	111693263	111693363	7702139	0	+	0.5	(0.476,0.515]	chrX	788221	32	INTRON	INTRON	ALG13	ENSG00000101901.12	ENST00000487141.5:ENST00000394780.8:ENST00000251943.8:ENST00000610588.4:ENST00000621367.4:ENST00000622997.3:ENST00000624161.3:ENST00000636363.1:ENST00000624881.3:ENST00000495283.5:ENST00000486353.5:ENST00000623144.3:ENST00000470971.5:ENST00000623148.3:ENST00000471924.5:ENST00000436609.5:ENST00000470704.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	17	145	2	1.5874	1.7935699999999999	1.99974	0.0114948	0.00269622	0.0958	0.0466548
chr7	111429781	111429881	3622784	0	-	0.32	(0.28,0.32]	chr7	337108	370	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000452895.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding	8	87	2	1.33399	1.793485	2.25298	0.0743182	0.00791652	0.191786	0.0797304
chr1	42955450	42955549	433114	0	-	0.515152	(0.476,0.515]	chr1	52506	7	INTRON	INTRON	SLC2A1	ENSG00000117394.24	ENST00000426263.10:ENST00000630287.2:ENST00000675112.1:ENST00000674765.1:ENST00000625233.2:ENST00000372500.4:ENST00000415851.6:ENST00000630821.1:ENST00000460369.3:ENST00000676097.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	50	2	1.53534	1.79344	2.05154	0.0476737	0.0336015	0.170116	0.134145
chr11	86065155	86065254	5014804	0	-	0.575758	(0.57,1]	chr11	473022	332	INTRON	INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000630913.2:ENST00000528398.5:ENST00000356360.9:ENST00000534412.5:ENST00000531558.1:ENST00000531930.5:ENST00000532041.5:ENST00000525162.5:ENST00000528256.1:ENST00000528411.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	35	2	1.2666	1.793385	2.32017	0.0788045	0.00488159	0.198736	0.0640618
chr6	147280002	147280102	2989470	0	+	0.3	(0.28,0.32]	chr6	280037	14	INTRON	INTRON	STXBP5	ENSG00000164506.15	ENST00000321680.11:ENST00000367481.7:ENST00000546097.5:ENST00000367480.7	protein_coding	protein_coding	protein_coding	protein_coding	7	79	2	1.64082	1.793365	1.94591	0.0422774	0.0228482	0.148082	0.125519
chr7	76569613	76569713	3340564	0	+	0.31	(0.28,0.32]	chr7	311170	177	INTRON	INTRON	ENSG00000205485	ENSG00000205485.13	ENST00000418663.5:ENST00000450661.1:ENST00000423084.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	7	79	2	1.64082	1.793365	1.94591	0.0422774	0.0228482	0.148082	0.125519
chr5	146502777	146502874	2516079	0	+	0.28866000000000003	(0.28,0.32]	chr5	240386	25	INTRON	INTRON	TCERG1	ENSG00000113649.13	ENST00000296702.9:ENST00000679501.2:ENST00000394421.7:ENST00000549332.1:ENST00000506524.5:ENST00000505285.5:ENST00000504116.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	58	2	1.68409	1.79336	1.90263	0.0548665	0.0503272	0.17488	0.165463
chr1	155727038	155727107	229903	0	+	0.362319	(0.35,0.378]	chr1	27035	1	INTRON	INTRON	DAP3	ENSG00000132676.16	ENST00000471642.6:ENST00000471214.5:ENST00000343043.7:ENST00000368336.10:ENST00000535183.5:ENST00000421487.6:ENST00000470830.5:ENST00000497826.5:ENST00000463575.5:ENST00000479151.5	protein_coding	protein_coding	protein_coding	protein_coding	14	126	2	1.41597	1.7931050000000002	2.17024	0.0237721	0.00397513	0.129075	0.0549214
chr19	5058740	5058840	7004321	0	+	0.56	(0.515,0.57]	chr19	694835	107	INTRON	INTRON	KDM4B	ENSG00000127663.15	ENST00000159111.9:ENST00000611640.4:ENST00000381759.8:ENST00000536461.5:ENST00000592175.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	43	2	1.56838	1.792875	2.01737	0.0424458	0.0352218	0.161763	0.137535
chr17	32472325	32472422	6598629	0	+	0.484536	(0.476,0.515]	chr17	641998	28	INTRON	INTRON	PSMD11	ENSG00000108671.11	ENST00000649012.1:ENST00000457654.6:ENST00000578397.5:ENST00000261712.8:ENST00000584340.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	44	2	1.72558	1.79286	1.86014	0.0767648	0.0277606	0.196164	0.137011
chr17	47154074	47154171	6789026	0	-	0.28866000000000003	(0.28,0.32]	chr17	669579	18	INTRON	INTRON	CDC27	ENSG00000004897.12	ENST00000066544.8:ENST00000531206.5:ENST00000533415.5:ENST00000527547.5:ENST00000526866.5:ENST00000525495.6:ENST00000574304.5:ENST00000575830.2:ENST00000576484.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	57	2	1.56134	1.79282	2.0243	0.0740624	0.0364967	0.191153	0.153759
chr3	194483198	194483298	1891163	0	-	0.54	(0.515,0.57]	chr3	189246	151	INTRON	INTRON	ATP13A3	ENSG00000133657.17	ENST00000687055.1:ENST00000645538.1:ENST00000645319.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	72	2	1.50809	1.79265	2.07721	0.0294196	0.0067022	0.128055	0.0738715
chr1	10073915	10074015	19537	0	+	0.42	(0.408,0.44]	chr1	1847	9	INTRON	INTRON	UBE4B	ENSG00000130939.20	ENST00000672724.1:ENST00000253251.12:ENST00000343090.11	protein_coding	protein_coding	protein_coding	protein_coding	9	78	2	1.57567	1.79264	2.00961	0.033074	0.00931007	0.133898	0.0855292
chr2	177247838	177247938	1275678	0	-	0.55	(0.515,0.57]	chr2	134708	132	INTRON	INTRON	NFE2L2	ENSG00000116044.16	ENST00000397063.8:ENST00000464747.5:ENST00000397062.8:ENST00000446151.6:ENST00000449627.1:ENST00000448782.5:ENST00000430047.1:ENST00000586532.5:ENST00000421929.5:ENST00000423513.5:ENST00000588123.1:ENST00000477534.1:ENST00000462023.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	44	2	1.79136	1.792605	1.79385	0.0638444	0.0201222	0.177811	0.121243
chr19	15304843	15304943	7147129	0	-	0.37	(0.35,0.378]	chr19	721965	245	INTRON	INTRON	BRD4	ENSG00000141867.19	ENST00000679869.1:ENST00000360016.9:ENST00000594841.5:ENST00000597315.5:ENST00000601941.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	48	2	1.65083	1.792575	1.93432	0.0521072	0.0481438	0.177022	0.153019
chr3	14943179	14943278	1619416	0	-	0.363636	(0.35,0.378]	chr3	167394	5	EXON_LNCRNA	EXON_LNCRNA:INTRON	FGD5-AS1	ENSG00000225733.7	ENST00000430166.5:ENST00000424349.1:ENST00000655923.1:ENST00000665449.1:ENST00000665738.1	lncRNA	lncRNA	lncRNA	lncRNA	11	104	2	1.6344	1.792395	1.95039	0.0189573	0.0095436	0.118501	0.082068
chrX	123693245	123693344	7878651	0	-	0.515152	(0.476,0.515]	chrX	802557	62	INTRON	INTRON	THOC2	ENSG00000125676.20	ENST00000245838.13:ENST00000355725.8:ENST00000491737.5:ENST00000433883.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	67	2	1.52755	1.792345	2.05714	0.0355377	0.0156961	0.151404	0.101453
chr3	101333362	101333460	1756757	0	-	0.438776	(0.408,0.44]	chr3	178241	1	INTRON	INTRON	SENP7	ENSG00000138468.16	ENST00000394095.7:ENST00000314261.11:ENST00000394094.6:ENST00000394091.5:ENST00000348610.3	protein_coding	protein_coding	protein_coding	protein_coding	9	74	2	1.49971	1.7922850000000001	2.08486	0.0298505	0.0145898	0.142135	0.0981689
chr6	4852902	4853002	2791628	0	+	0.47	(0.44,0.476]	chr6	263602	162	INTRON	INTRON	CDYL	ENSG00000153046.18	ENST00000328908.9:ENST00000491864.1:ENST00000440139.5:ENST00000483019.1:ENST00000397588.8:ENST00000472453.5:ENST00000449732.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	10	80	2	1.59515	1.792265	1.98938	0.0198602	0.0165796	0.110511	0.109608
chr8	129527668	129527768	4060559	0	-	0.47	(0.44,0.476]	chr8	369648	171	INTRON	INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1:ENST00000676273.1:ENST00000667643.1:ENST00000668791.1:ENST00000663716.1:ENST00000663572.1:ENST00000676148.1:ENST00000667962.1:ENST00000674877.1:ENST00000675316.1:ENST00000674656.1:ENST00000446592.7:ENST00000667341.1:ENST00000675186.1:ENST00000652971.1:ENST00000661447.1:ENST00000674863.1:ENST00000675498.1:ENST00000675527.1:ENST00000676108.1:ENST00000657647.1:ENST00000675589.1:ENST00000675913.1:ENST00000675109.1:ENST00000671632.1:ENST00000671311.1:ENST00000676099.1:ENST00000660652.1:ENST00000675522.1:ENST00000675183.1:ENST00000658861.1:ENST00000663991.1:ENST00000675044.1:ENST00000675435.1:ENST00000674639.1:ENST00000676069.1:ENST00000675532.1:ENST00000674762.1:ENST00000523151.6:ENST00000675948.1:ENST00000665364.1:ENST00000657251.1:ENST00000675166.1:ENST00000674883.1:ENST00000675867.1:ENST00000674580.1:ENST00000675393.1:ENST00000520048.1:ENST00000674906.1:ENST00000676030.1:ENST00000670588.1:ENST00000675072.1:ENST00000664936.1:ENST00000652914.1:ENST00000657069.1	lncRNA	lncRNA	lncRNA	lncRNA	12	103	2	1.77578	1.7922099999999999	1.80864	0.0107599	0.0105236	0.0908969	0.0867043
chr2	55003389	55003489	1120933	0	-	0.36	(0.35,0.378]	chr2	120142	153	INTRON	INTRON	RTN4	ENSG00000115310.19	ENST00000394609.6:ENST00000404909.5:ENST00000394611.6:ENST00000317610.11:ENST00000357732.8:ENST00000337526.11:ENST00000357376.7:ENST00000405240.5:ENST00000438462.1	protein_coding	protein_coding	protein_coding	protein_coding	11	97	2	1.74796	1.792145	1.83633	0.0335602	0.00734467	0.134145	0.0765441
chr17	50733160	50733260	6627104	0	+	0.2	[0,0.28]	chr17	647183	88	INTRON	INTRON	LUC7L3	ENSG00000108848.16	ENST00000625349.2:ENST00000508045.5:ENST00000508218.5:ENST00000509335.5:ENST00000506686.5:ENST00000393227.6:ENST00000504563.6:ENST00000505658.6:ENST00000240304.5:ENST00000508482.5:ENST00000505619.5:ENST00000510984.5:ENST00000507200.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	103	2	1.55741	1.79208	2.02675	0.0792968	0.00731917	0.199711	0.0762929
chr17	82917595	82917694	6695907	0	+	0.626263	(0.57,1]	chr17	655036	36	INTRON	INTRON	TBCD	ENSG00000141556.22	ENST00000682479.1:ENST00000682722.1:ENST00000684464.1:ENST00000684544.1:ENST00000681983.1:ENST00000684361.1:ENST00000683184.1:ENST00000683282.1:ENST00000684408.1:ENST00000355528.9:ENST00000683444.1:ENST00000684776.1:ENST00000683041.1:ENST00000684760.1:ENST00000684349.1:ENST00000682213.1:ENST00000539345.6:ENST00000684000.1:ENST00000684188.1:ENST00000684429.1:ENST00000682610.1:ENST00000683821.1:ENST00000682654.1:ENST00000576160.6:ENST00000571712.5:ENST00000576996.5:ENST00000683584.1:ENST00000682099.1:ENST00000684559.1:ENST00000576760.5:ENST00000683839.1:ENST00000574975.5:ENST00000572953.5:ENST00000571796.5:ENST00000682315.1:ENST00000574422.1:ENST00000576677.6:ENST00000571618.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	23	2	1.67986	1.79203	1.9042	0.0496395	0.0476976	0.174685	0.153019
chr2	65431061	65431161	1144182	0	-	0.77	(0.57,1]	chr2	122242	535	INTRON	INTRON	SPRED2	ENSG00000198369.10	ENST00000356388.9:ENST00000440972.1	protein_coding	protein_coding	protein_coding	protein_coding	5	23	2	1.67986	1.79203	1.9042	0.0496395	0.0476976	0.174685	0.153019
chr22	16611993	16612093	7473461	0	+	0.41	(0.408,0.44]	chr22	761977	1	SS5_PROX	SS5_PROX:INTRON	TPTEP1:ENSG00000283633	ENSG00000100181.22:ENSG00000283633.1	ENST00000558085.6:ENST00000400593.6:ENST00000592918.5:ENST00000592107.5:ENST00000426585.5:ENST00000591299.1	lncRNA	lncRNA	lncRNA:transcribed_unprocessed_pseudogene	lncRNA:processed_transcript	17	140	2	1.39672	1.7919399999999999	2.18716	0.022395	0.00160247	0.11692	0.0367961
chr17	35596444	35596543	6599626	0	+	0.363636	(0.35,0.378]	chr17	642232	20	INTRON	INTRON	AP2B1	ENSG00000006125.18	ENST00000589774.5:ENST00000616784.4:ENST00000621914.4:ENST00000620039.4:ENST00000616681.4:ENST00000621668.4:ENST00000610402.5:ENST00000612035.4:ENST00000591610.5:ENST00000590538.5:ENST00000614600.4:ENST00000590432.5:ENST00000612116.5:ENST00000618940.4:ENST00000588093.1:ENST00000592167.5:ENST00000593014.3:ENST00000628168.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	86	2	1.49028	1.79188	2.09348	0.0590834	0.00418185	0.168067	0.0591344
chr10	72707782	72707882	4450242	0	+	0.33	(0.32,0.35]	chr10	410728	1	SS3_PROX	SS3_PROX:INTRON	MCU	ENSG00000156026.15	ENST00000373053.8:ENST00000357157.10:ENST00000604679.5:ENST00000604372.5:ENST00000603649.5:ENST00000605597.5:ENST00000536019.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	66	2	1.54135	1.79186	2.04237	0.0375542	0.0353776	0.150752	0.140222
chr17	30709554	30709640	6589578	0	+	0.325581	(0.32,0.35]	chr17	640835	4	EXON_LNCRNA	EXON_LNCRNA	SUZ12P1	ENSG00000264538.7	ENST00000578070.5:ENST00000579526.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	17	169	2	1.72159	1.79182	1.86205	0.0114806	0.00377892	0.0889104	0.0562562
chr18	46096937	46097037	6965491	0	-	0.37	(0.35,0.378]	chr18	689416	14	INTRON	INTRON	ATP5F1A	ENSG00000152234.16	ENST00000398752.11:ENST00000282050.6:ENST00000593152.6:ENST00000586592.5:ENST00000590665.5:ENST00000590156.5:ENST00000592364.5:ENST00000589252.5:ENST00000589869.5:ENST00000590406.5:ENST00000590324.5:ENST00000590448.5:ENST00000592989.1:ENST00000591981.5:ENST00000585650.1:ENST00000591267.1:ENST00000588390.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	17	160	2	1.41246	1.79182	2.17118	0.0325745	7.06266e-4	0.133687	0.0241881
chr9	135957189	135957287	4372530	0	-	0.571429	(0.57,1]	chr9	402553	14	INTRON	INTRON	UBAC1	ENSG00000130560.9	ENST00000371756.4:ENST00000478485.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	38	2	1.26343	1.7918	2.32017	0.0641008	0.00488159	0.178019	0.0640618
chr4	10114229	10114327	2107402	0	-	0.489796	(0.476,0.515]	chr4	208496	55	INTRON	INTRON	WDR1	ENSG00000071127.17	ENST00000499869.7:ENST00000382451.6:ENST00000382452.6:ENST00000502702.5:ENST00000508079.1:ENST00000505851.5:ENST00000514319.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	52	2	1.58972	1.7915649999999999	1.99341	0.0427022	0.037389	0.155878	0.148082
chr1	225411540	225411640	645585	0	-	0.62	(0.57,1]	chr1	76350	1	SS3_PROX	SS3_PROX:INTRON	LBR	ENSG00000143815.15	ENST00000272163.9:ENST00000338179.6:ENST00000651341.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	17	73	2	1.53307	1.791555	2.05004	0.0128189	0.00118006	0.0926667	0.031662
chr16	84566459	84566555	6533262	0	-	0.552083	(0.515,0.57]	chr16	633072	10	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	COTL1	ENSG00000103187.8	ENST00000262428.5:ENST00000567278.1:ENST00000564057.1:ENST00000561707.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	12	88	2	1.69385	1.79153	1.88921	0.0139144	0.00671358	0.10247	0.0707875
chr12	110397649	110397748	5409138	0	-	0.444444	(0.44,0.476]	chr12	516463	8	INTRON	INTRON	ANAPC7:ENSG00000258210	ENSG00000196510.14:ENSG00000258210.1	ENST00000455511.9:ENST00000450008.3:ENST00000552170.2:ENST00000550231.1:ENST00000464697.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay	9	78	2	1.69823	1.7915299999999998	1.88483	0.0218548	0.0149825	0.11491	0.107704
chr6	35880531	35880630	3088411	0	-	0.494949	(0.476,0.515]	chr6	288860	58	INTRON	INTRON	SRPK1	ENSG00000096063.16	ENST00000373825.7:ENST00000423325.6:ENST00000346162.10:ENST00000361690.7:ENST00000510290.5:ENST00000373821.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	53	2	1.74317	1.79139	1.83961	0.0396373	0.0314489	0.161534	0.13151
chr6	31535081	31535176	3078768	0	-	0.442105	(0.44,0.476]	chr6	286741	7	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	DDX39B	ENSG00000198563.14	ENST00000458640.5:ENST00000462256.5:ENST00000376177.6:ENST00000484566.5:ENST00000396172.6:ENST00000482195.5:ENST00000431908.5:ENST00000481456.1:ENST00000427214.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	52	430	2	1.67201	1.791255	1.9105	0.00265524	3.29959e-4	0.0461495	0.0161352
chr1	32171192	32171291	64102	0	+	0.282828	(0.28,0.32]	chr1	8150	4	UTR3	UTR3:EXON_MRNA	KPNA6	ENSG00000025800.14	ENST00000373625.8:ENST00000471599.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	39	420	2	1.57911	1.79125	2.00339	0.00829203	5.99677e-4	0.0774402	0.0223326
chr7	111437474	111437574	3622861	0	-	0.3	(0.28,0.32]	chr7	337108	447	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000452895.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding	6	69	2	1.71442	1.7912	1.86798	0.0454351	0.0335733	0.164236	0.134145
chr17	63769185	63769285	6811940	0	-	0.44	(0.408,0.44]	chr17	673194	26	INTRON	INTRON	CCDC47	ENSG00000108588.15	ENST00000225726.10:ENST00000403162.7:ENST00000582252.1:ENST00000584112.1:ENST00000580986.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	78	2	1.66945	1.79107	1.91269	0.0218479	0.0153219	0.123836	0.100173
chr20	3929791	3929890	7308541	0	-	0.363636	(0.35,0.378]	chr20	744262	26	UTR3	UTR3:EXON_MRNA	RNF24	ENSG00000101236.17	ENST00000336095.10:ENST00000358395.11	protein_coding	protein_coding	protein_coding	protein_coding	6	58	2	1.60653	1.791015	1.9755	0.0427748	0.0398617	0.161534	0.148082
chrX	24075836	24075932	7630954	0	+	0.4375	(0.408,0.44]	chrX	781493	21	INTRON	INTRON	EIF2S3	ENSG00000130741.11	ENST00000253039.9:ENST00000457332.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	33	280	2	1.78328	1.79098	1.79868	0.00235527	0.00154318	0.0436335	0.0362716
chr7	119776300	119776400	3629102	0	-	0.47	(0.44,0.476]	chr7	337323	238	INTRON	INTRON	LINC02476	ENSG00000225546.6	ENST00000660268.1:ENST00000431071.5:ENST00000426413.2	lncRNA	lncRNA	lncRNA	lncRNA	16	135	2	1.65703	1.79097	1.92491	0.0122328	0.00301776	0.0910127	0.0507519
chr7	130081602	130081702	3413705	0	+	0.34	(0.32,0.35]	chr7	319098	104	INTRON	INTRON	KLHDC10	ENSG00000128607.14	ENST00000335420.10:ENST00000463413.1:ENST00000468226.1	protein_coding	protein_coding	protein_coding	protein_coding	6	60	2	1.77704	1.7909549999999999	1.80487	0.0719969	0.0210603	0.187322	0.122559
chr7	44881936	44882035	3528743	0	-	0.434343	(0.408,0.44]	chr7	329128	58	UTR3	UTR3:EXON_MRNA	PURB	ENSG00000146676.10	ENST00000395699.5	protein_coding	protein_coding	protein_coding	protein_coding	10	85	2	1.42285	1.790895	2.15894	0.0421231	0.00504142	0.148082	0.0646039
chrX	24781148	24781247	7632589	0	+	0.454545	(0.44,0.476]	chrX	781731	54	INTRON	INTRON	POLA1	ENSG00000101868.13	ENST00000672178.1:ENST00000379068.8:ENST00000379059.7:ENST00000611764.2:ENST00000480125.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	74	2	1.67777	1.7907899999999999	1.90381	0.0260626	0.0155465	0.122153	0.109378
chr8	102387498	102387598	4012504	0	-	0.47	(0.44,0.476]	chr8	367237	255	INTRON	INTRON	UBR5	ENSG00000104517.13	ENST00000520539.6:ENST00000220959.8:ENST00000521922.5	protein_coding	protein_coding	protein_coding	protein_coding	11	94	2	1.67777	1.790745	1.90372	0.0155465	0.0103521	0.109378	0.085045
chr7	99563465	99563564	3362742	0	+	0.515152	(0.476,0.515]	chr7	314142	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ZNF655	ENSG00000197343.11	ENST00000320583.9:ENST00000626122.2:ENST00000467680.5:ENST00000357864.6:ENST00000452314.5:ENST00000416144.5:ENST00000454654.5:ENST00000412636.5:ENST00000252713.9:ENST00000449244.5:ENST00000423973.5:ENST00000493947.5:ENST00000425063.5:ENST00000493277.5:ENST00000422422.5:ENST00000422164.5:ENST00000427931.5:ENST00000422647.5:ENST00000424881.5:ENST00000440391.5:ENST00000394163.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	45	2	1.7425	1.7906499999999999	1.8388	0.0564473	0.0417334	0.184423	0.147007
chr7	111312887	111312987	3621611	0	-	0.3	(0.28,0.32]	chr7	337093	3490	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	139	2	1.23494	1.79064	2.34634	0.0625976	0.00156493	0.175915	0.0365263
chr16	4714991	4715088	6438060	0	-	0.309278	(0.28,0.32]	chr16	619988	3	INTRON	INTRON	ANKS3	ENSG00000168096.15	ENST00000450067.6:ENST00000614075.4:ENST00000304283.9:ENST00000592077.5:ENST00000590193.5:ENST00000446014.6:ENST00000591653.5:ENST00000590803.5:ENST00000585773.5:ENST00000590730.5:ENST00000586605.5:ENST00000592421.5:ENST00000592068.5:ENST00000586166.5:ENST00000592698.5:ENST00000586159.5:ENST00000586632.1:ENST00000589065.5:ENST00000593120.5:ENST00000592711.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	56	2	1.71442	1.7906300000000002	1.86684	0.0605813	0.0454351	0.171122	0.164236
chr19	58247181	58247281	7106712	0	+	0.43	(0.408,0.44]	chr19	713335	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ZNF544	ENSG00000198131.15	ENST00000599227.5:ENST00000687789.1:ENST00000594384.5:ENST00000597240.5:ENST00000652201.1:ENST00000596825.5:ENST00000596929.5:ENST00000596677.5:ENST00000600220.5:ENST00000600044.5:ENST00000596652.5:ENST00000599953.1:ENST00000598880.5:ENST00000600775.5:ENST00000595981.5:ENST00000627781.2:ENST00000269829.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	59	2	1.43388	1.7906	2.14732	0.0509486	0.0237354	0.157123	0.129075
chr20	17967865	17967954	7320563	0	-	0.47191	(0.44,0.476]	chr20	745338	3	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	SNX5	ENSG00000089006.17	ENST00000377768.7:ENST00000490175.5:ENST00000377759.9:ENST00000431277.5:ENST00000419004.2:ENST00000474883.5:ENST00000469704.1:ENST00000606602.1:ENST00000606557.1:ENST00000481323.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	74	2	1.29261	1.79054	2.28847	0.0583425	0.00692113	0.189184	0.0718189
chr3	196811341	196811435	1596216	0	+	0.468085	(0.44,0.476]	chr3	165344	3	INTRON	INTRON	PAK2	ENSG00000180370.10	ENST00000327134.7	protein_coding	protein_coding	protein_coding	protein_coding	6	53	2	1.7651	1.790525	1.81595	0.039388	0.0317953	0.14477	0.143072
chr12	120553098	120553198	5235954	0	+	0.55	(0.515,0.57]	chr12	496869	4	SS5_PROX	SS5_PROX:INTRON	RNF10	ENSG00000022840.17	ENST00000325954.9:ENST00000542438.1:ENST00000538796.5:ENST00000413266.6:ENST00000551139.6:ENST00000536869.5:ENST00000543578.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	48	2	1.49552	1.790495	2.08547	0.0385038	0.0289426	0.159277	0.1274
chr6	4825298	4825398	2791351	0	+	0.31	(0.28,0.32]	chr6	263598	481	INTRON	INTRON	CDYL	ENSG00000153046.18	ENST00000328908.9:ENST00000491864.1:ENST00000440139.5:ENST00000483019.1:ENST00000397588.8:ENST00000472453.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	78	2	1.51187	1.790355	2.06884	0.0598267	0.0152581	0.169278	0.108569
chr17	32381685	32381785	6598312	0	+	0.29	(0.28,0.32]	chr17	641948	84	UTR3	UTR3:EXON_MRNA	ZNF207	ENSG00000010244.19	ENST00000394670.9	protein_coding	protein_coding	protein_coding	protein_coding	27	290	2	1.71661	1.79028	1.86395	0.00786797	0.00180803	0.076155	0.039365700000000003
chr7	105495553	105495653	3604591	0	-	0.57	(0.515,0.57]	chr7	336251	3	SS3_PROX	SS3_PROX:INTRON	PUS7	ENSG00000091127.14	ENST00000481939.5:ENST00000469408.6:ENST00000356362.6:ENST00000482157.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	85	2	1.54685	1.790265	2.03368	0.0166379	0.00803127	0.102621	0.0803474
chr19	1588726	1588824	7112484	0	-	0.438776	(0.408,0.44]	chr19	714541	25	INTRON	INTRON	MBD3:ENSG00000267059	ENSG00000071655.18:ENSG00000267059.2	ENST00000434436.8:ENST00000156825.5:ENST00000585937.1:ENST00000585967.5:ENST00000592965.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	15	126	2	1.5285	1.7902550000000002	2.05201	0.0146221	0.00399995	0.106187	0.0551303
chr5	139594367	139594467	2500834	0	+	0.3	(0.28,0.32]	chr5	239026	316	INTRON	INTRON	UBE2D2	ENSG00000131508.16	ENST00000511725.5:ENST00000505007.5:ENST00000398733.8:ENST00000510470.1:ENST00000398734.8:ENST00000505548.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	68	2	1.72279	1.7902550000000002	1.85772	0.0496859	0.0300199	0.156383	0.142135
chr1	21770069	21770169	396739	0	-	0.55	(0.515,0.57]	chr1	47345	119	INTRON	INTRON	USP48	ENSG00000090686.16	ENST00000400301.5:ENST00000308271.14:ENST00000529637.5:ENST00000421625.6:ENST00000527823.5:ENST00000532737.1:ENST00000489108.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	93	2	1.68687	1.7901500000000001	1.89343	0.0300837	0.00243616	0.129186	0.0456604
chr22	21690538	21690624	7482714	0	+	0.383721	(0.378,0.408]	chr22	763394	3	INTRON	INTRON	PPIL2	ENSG00000100023.20	ENST00000679795.1:ENST00000679540.1:ENST00000679580.1:ENST00000681286.1:ENST00000680061.1:ENST00000681338.1:ENST00000681956.1:ENST00000679827.1:ENST00000679534.1:ENST00000679479.1:ENST00000680393.1:ENST00000335025.12:ENST00000498109.2:ENST00000398831.8:ENST00000681394.1:ENST00000679477.1:ENST00000626352.2:ENST00000417788.5:ENST00000681791.1:ENST00000679692.1:ENST00000680962.1:ENST00000680094.1:ENST00000680434.1:ENST00000680109.1:ENST00000406385.1:ENST00000681137.1:ENST00000680860.1:ENST00000680183.1:ENST00000446951.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	55	2	1.58349	1.790135	1.99678	0.0653091	0.0177959	0.180158	0.113452
chr21	10329935	10330034	7427319	0	-	0.292929	(0.28,0.32]	chr21	757671	5	INTRON	INTRON	ENSG00000277693	ENSG00000277693.2	ENST00000622592.1:ENST00000616952.1	lncRNA	lncRNA	lncRNA	lncRNA	12	125	2	1.1706	1.790095	2.40959	0.0748366	0.00207334	0.192975	0.0422762
chr1	52883352	52883451	105322	0	+	0.424242	(0.408,0.44]	chr1	13774	13	INTRON	INTRON	ZYG11A	ENSG00000203995.10	ENST00000371532.5:ENST00000612017.4:ENST00000371528.2	protein_coding	protein_coding	protein_coding	protein_coding	8	68	2	1.35739	1.790035	2.22268	0.063317	0.00770925	0.177047	0.0784002
chr2	53909874	53909974	1119941	0	-	0.57	(0.515,0.57]	chr2	119988	4	SS5_PROX	SS5_PROX:INTRON	PSME4	ENSG00000068878.15	ENST00000404125.6:ENST00000389993.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	66	2	1.63907	1.790005	1.94094	0.0350277	0.00719628	0.137535	0.0756137
chr7	128752374	128752473	3408511	0	+	0.40404	(0.378,0.408]	chr7	318435	32	INTRON	INTRON	CALU	ENSG00000128595.17	ENST00000535011.6:ENST00000542996.6:ENST00000249364.9:ENST00000449187.6:ENST00000479257.5	protein_coding	protein_coding	protein_coding	protein_coding	7	63	2	1.73164	1.789975	1.84831	0.0441773	0.0172621	0.149888	0.111749
chr10	43403826	43403926	4605453	0	-	0.48	(0.476,0.515]	chr10	424262	66	INTRON	INTRON	HNRNPF	ENSG00000169813.17	ENST00000356053.7:ENST00000357065.8:ENST00000682386.1:ENST00000337970.7	protein_coding	protein_coding	protein_coding	protein_coding	10	85	2	1.62505	1.78987	1.95469	0.0210589	0.0115753	0.112542	0.0962115
chr1	42684957	42685056	83968	0	+	0.393939	(0.378,0.408]	chr1	11020	11	INTRON	INTRON	YBX1	ENSG00000065978.19	ENST00000321358.12:ENST00000332220.10:ENST00000436427.1:ENST00000467957.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	63	2	1.71374	1.78986	1.86598	0.0300232	0.0274158	0.136498	0.129138
chr22	20918745	20918844	7480530	0	+	0.50505	(0.476,0.515]	chr22	763090	1	INTRON	INTRON	CRKL	ENSG00000099942.13	ENST00000354336.8:ENST00000411769.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	93	2	1.72573	1.789835	1.85394	0.0196488	0.00763096	0.109608	0.0777238
chr3	152307143	152307243	1535370	0	+	0.52	(0.515,0.57]	chr3	159996	48	INTRON	INTRON	MBNL1	ENSG00000152601.18	ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000495875.6:ENST00000324210.10:ENST00000493459.5:ENST00000459747.1:ENST00000460591.5:ENST00000545754.5:ENST00000357472.7:ENST00000324196.9:ENST00000498502.5:ENST00000463374.5:ENST00000485910.5:ENST00000465907.6:ENST00000492948.5:ENST00000485509.5:ENST00000464596.5	protein_coding	protein_coding	protein_coding	protein_coding	33	215	2	1.24875	1.78978	2.33081	0.0142697	2.02598e-4	0.103838	0.0129814
chr13	30459970	30460069	5569875	0	-	0.343434	(0.32,0.35]	chr13	532365	34	UTR3	UTR3:EXON_MRNA	HMGB1	ENSG00000189403.15	ENST00000341423.10:ENST00000405805.5:ENST00000339872.8	protein_coding	protein_coding	protein_coding	protein_coding	6	62	2	1.60297	1.789755	1.97654	0.0647328	0.0199113	0.179192	0.120668
chr7	127912499	127912599	3405022	0	+	0.32	(0.28,0.32]	chr7	318161	73	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000465900.5:ENST00000486037.1:ENST00000484767.5:ENST00000492840.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	56	2	1.6633	1.789705	1.91611	0.0539102	0.0522231	0.177274	0.164153
chrY	11195575	11195675	7929968	0	-	0.31	(0.28,0.32]	chrY	807176	321	INTRON	INTRON	ENSG00000278212	ENSG00000278212.3	ENST00000652671.1:ENST00000651211.2:ENST00000687423.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	5	56	2	1.6633	1.789705	1.91611	0.0539102	0.0522231	0.177274	0.164153
chr9	107296854	107296953	4183513	0	+	0.484848	(0.476,0.515]	chr9	381543	116	INTRON	INTRON	RAD23B	ENSG00000119318.13	ENST00000419616.5:ENST00000358015.8:ENST00000416373.6:ENST00000442587.1	protein_coding	protein_coding	protein_coding	protein_coding	10	89	2	1.40757	1.7896999999999998	2.17183	0.0707852	0.00174985	0.184528	0.0386524
chr22	21427726	21427826	7481276	0	+	0.38	(0.378,0.408]	chr22	763209	66	INTRON	INTRON	HIC2	ENSG00000169635.10	ENST00000407464.7:ENST00000407598.2	protein_coding	protein_coding	protein_coding	protein_coding	13	115	2	1.75933	1.78953	1.81973	0.0108435	0.00858544	0.0873034	0.083729
chr10	68025145	68025245	4637435	0	-	0.45	(0.44,0.476]	chr10	426399	2	SS5_PROX	SS5_PROX:INTRON	HERC4	ENSG00000148634.16	ENST00000277817.10:ENST00000373700.9:ENST00000412272.6:ENST00000395198.7:ENST00000473533.6:ENST00000427635.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	56	2	1.4962	1.789485	2.08277	0.0392301	0.0309998	0.161534	0.13151
chr14	103681426	103681525	5828182	0	+	0.464646	(0.44,0.476]	chr14	553120	15	INTRON	INTRON	KLC1	ENSG00000126214.22	ENST00000348520.10:ENST00000380038.7:ENST00000334553.11:ENST00000389744.8:ENST00000555836.5:ENST00000347839.10:ENST00000553286.5:ENST00000557575.5:ENST00000452929.6:ENST00000554280.5:ENST00000557450.5:ENST00000554228.5:ENST00000634686.1:ENST00000246489.11:ENST00000445352.8:ENST00000537046.6:ENST00000553325.5:ENST00000555856.1:ENST00000535194.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	56	2	1.4962	1.789485	2.08277	0.0392301	0.0309998	0.161534	0.13151
chr1	144698	144796	352753	0	-	0.5	(0.476,0.515]	chr1	40803	13	INTRON	INTRON	ENSG00000241860	ENSG00000241860.7	ENST00000484859.1:ENST00000490997.5	lncRNA	lncRNA	lncRNA	lncRNA	19	159	2	1.46692	1.789325	2.11173	0.0142346	0.00156918	0.103747	0.0361131
chrX	154788274	154788372	7915431	0	-	0.367347	(0.35,0.378]	chrX	806147	15	INTRON	INTRON	MPP1	ENSG00000130830.15	ENST00000369534.8:ENST00000413259.7:ENST00000439370.5:ENST00000393531.5:ENST00000453245.5:ENST00000494170.1:ENST00000462825.5:ENST00000393529.5:ENST00000475943.5:ENST00000428488.1:ENST00000488754.5:ENST00000417435.5:ENST00000488694.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	15	139	2	1.60061	1.7892450000000002	1.97788	0.0249092	0.00196834	0.12011	0.0411469
chr9	130745354	130745454	4214178	0	+	0.5	(0.476,0.515]	chr9	386427	305	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000393293.4	protein_coding	protein_coding	protein_coding	protein_coding	14	120	2	1.78488	1.789145	1.79341	0.009837	0.00708648	0.0877296	0.0722138
chr3	185754002	185754102	1885638	0	-	0.44	(0.408,0.44]	chr3	188573	553	INTRON	INTRON	IGF2BP2	ENSG00000073792.16	ENST00000382199.7:ENST00000346192.7:ENST00000457616.6:ENST00000421047.3:ENST00000461957.5:ENST00000493302.5:ENST00000466476.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	77	2	1.54382	1.789065	2.03431	0.0284747	0.0154896	0.12666	0.108998
chr20	35738267	35738367	7336517	0	-	0.32	(0.28,0.32]	chr20	747495	13	INTRON	INTRON	RBM39	ENSG00000131051.24	ENST00000253363.11:ENST00000639702.1:ENST00000656873.1:ENST00000463004.5:ENST00000361162.10:ENST00000461283.5:ENST00000403542.6:ENST00000338163.10:ENST00000528062.7:ENST00000429968.5:ENST00000444878.5:ENST00000665058.1:ENST00000374038.7:ENST00000412738.5:ENST00000434927.5:ENST00000425184.5:ENST00000481037.5:ENST00000455343.5:ENST00000416108.5:ENST00000426951.5:ENST00000477334.1:ENST00000442447.5:ENST00000449489.5:ENST00000433027.5:ENST00000487604.1:ENST00000453310.5:ENST00000416529.5:ENST00000397370.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	54	575	2	1.64923	1.789005	1.92878	0.00568568	4.77909e-4	0.0655345	0.0198061
chr14	21248750	21248850	5834959	0	-	0.33	(0.32,0.35]	chr14	554459	119	INTRON	INTRON	HNRNPC	ENSG00000092199.19	ENST00000336053.10:ENST00000553300.6:ENST00000554969.5:ENST00000556142.5:ENST00000554455.5:ENST00000430246.6:ENST00000553753.5:ENST00000555309.5:ENST00000555914.5:ENST00000557442.5:ENST00000556628.5:ENST00000556513.5:ENST00000555883.5:ENST00000557201.5:ENST00000556897.5:ENST00000420743.6:ENST00000554539.5:ENST00000554383.5:ENST00000555215.5:ENST00000555137.5:ENST00000554891.5:ENST00000556226.5:ENST00000555176.5:ENST00000553614.5:ENST00000557336.1:ENST00000557768.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	62	2	1.64769	1.7890000000000001	1.93031	0.0578603	0.0231421	0.167723	0.126939
chr16	1371018	1371118	6427530	0	-	0.47	(0.44,0.476]	chr16	617811	1	SS5_PROX	SS5_PROX:INTRON	UNKL	ENSG00000059145.19	ENST00000389221.9:ENST00000248104.11:ENST00000403703.5:ENST00000674376.1:ENST00000397464.5:ENST00000508903.7:ENST00000402641.6:ENST00000513783.1:ENST00000515195.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	11	92	2	1.49345	1.78899	2.08453	0.0271885	0.00689	0.123904	0.0750118
chr12	62368912	62369012	5150653	0	+	0.36	(0.35,0.378]	chr12	487365	131	INTRON	INTRON	USP15	ENSG00000135655.16	ENST00000353364.7:ENST00000280377.10:ENST00000547317.5:ENST00000549268.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	48	2	1.58862	1.788955	1.98929	0.0615516	0.0417909	0.193423	0.147075
chr6	7114990	7115090	2798435	0	+	0.29	(0.28,0.32]	chr6	263723	59	INTRON	INTRON	RREB1	ENSG00000124782.21	ENST00000379933.7:ENST00000491191.5:ENST00000471433.5:ENST00000379938.7:ENST00000467782.5:ENST00000349384.10:ENST00000334984.10:ENST00000475946.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	100	2	1.63236	1.7889300000000001	1.9455	0.0273014	0.016777	0.136494	0.103294
chr1	16740897	16740996	36309	0	+	0.50505	(0.476,0.515]	chr1	4441	1	INTRON	INTRON	CROCC	ENSG00000058453.17	ENST00000466256.6	protein_coding	processed_transcript	protein_coding	processed_transcript	7	63	2	1.68092	1.78887	1.89682	0.0474026	0.0158424	0.169265	0.101453
chr5	142135729	142135817	2505795	0	+	0.397727	(0.378,0.408]	chr5	239836	1	CDS	CDS:EXON_MRNA	NDFIP1	ENSG00000131507.11	ENST00000253814.6:ENST00000505614.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	59	2	1.63086	1.788835	1.94681	0.0457723	0.0252353	0.149888	0.133676
chr22	18568898	18568997	7551041	0	-	0.464646	(0.44,0.476]	chr22	771829	160	INTRON	INTRON	PI4KAP1	ENSG00000274602.5	ENST00000612500.4:ENST00000611748.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	20	168	2	1.31052	1.788765	2.26701	0.0303958	3.58264e-4	0.130461	0.0169207
chr12	49508575	49508674	5134376	0	+	0.363636	(0.35,0.378]	chr12	484045	80	INTRON	INTRON	SPATS2	ENSG00000123352.18	ENST00000549412.5:ENST00000552918.6:ENST00000553127.5:ENST00000321898.10:ENST00000552557.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	55	2	1.64283	1.788575	1.93432	0.0481438	0.034896	0.153019	0.148998
chr3	195375724	195375824	1895238	0	-	0.45	(0.44,0.476]	chr3	189674	176	INTRON	INTRON	ACAP2	ENSG00000114331.16	ENST00000326793.11:ENST00000635383.1:ENST00000480906.5:ENST00000481463.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	44	2	1.49942	1.78851	2.0776	0.0792118	0.0292951	0.199574	0.141862
chr3	48530440	48530540	1688642	0	-	0.33	(0.32,0.35]	chr3	172531	44	INTRON	INTRON	PFKFB4	ENSG00000114268.12	ENST00000232375.8:ENST00000490115.5:ENST00000383734.6:ENST00000416568.5:ENST00000417753.5:ENST00000445633.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	79	2	1.57911	1.7884799999999998	1.99785	0.0313129	0.0215554	0.144381	0.114686
chr6	89781298	89781398	3161643	0	-	0.4	(0.378,0.408]	chr6	294840	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	MDN1	ENSG00000112159.12	ENST00000369393.8:ENST00000629399.2:ENST00000439638.1	protein_coding	protein_coding	protein_coding	protein_coding	7	63	2	1.43665	1.7884699999999998	2.14029	0.0669652	0.0106742	0.183051	0.0917199
chr21	39346920	39347016	7465683	0	-	0.28125	(0.28,0.32]	chr21	760601	11	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	HMGN1	ENSG00000205581.11	ENST00000492280.5:ENST00000431390.5:ENST00000486741.5:ENST00000380749.10:ENST00000288344.14:ENST00000652622.1:ENST00000436324.5:ENST00000380748.5:ENST00000419378.5:ENST00000489072.5:ENST00000482192.5:ENST00000380747.5:ENST00000485550.5:ENST00000490032.5:ENST00000443046.5:ENST00000464078.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	18	196	2	1.64128	1.78841	1.93554	0.00937974	0.00563539	0.0860087	0.0653997
chr1	65053163	65053263	475421	0	-	0.5	(0.476,0.515]	chr1	57241	82	INTRON	INTRON	JAK1	ENSG00000162434.13	ENST00000672434.1:ENST00000671954.1:ENST00000673502.1:ENST00000672751.1:ENST00000672099.1	protein_coding	protein_coding	protein_coding	protein_coding	5	44	2	1.58335	1.78838	1.99341	0.0640461	0.037389	0.177882	0.155878
chr9	97570534	97570634	4172287	0	+	0.52	(0.515,0.57]	chr9	380118	11	INTRON	INTRON	TMOD1	ENSG00000136842.14	ENST00000395211.6:ENST00000259365.9:ENST00000375175.1	protein_coding	protein_coding	protein_coding	protein_coding	6	45	2	1.69407	1.78833	1.88259	0.0459452	0.0251849	0.149888	0.133519
chr8	60523652	60523752	3757867	0	+	0.35	(0.32,0.35]	chr8	349495	60	INTRON	INTRON	RAB2A	ENSG00000104388.15	ENST00000531289.5:ENST00000262646.12:ENST00000481569.1:ENST00000529579.5:ENST00000466595.5:ENST00000429861.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	71	2	1.72405	1.788325	1.8526	0.0332438	0.0275418	0.137011	0.134145
chr8	55825090	55825186	3754320	0	+	0.541667	(0.515,0.57]	chr8	349245	5	UTR3	UTR3:EXON_MRNA	TGS1	ENSG00000137574.11	ENST00000260129.6:ENST00000523948.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	63	2	1.35483	1.7882449999999999	2.22166	0.0486665	0.00735516	0.154097	0.0765982
chr11	85974008	85974107	5013860	0	-	0.252525	[0,0.28]	chr11	472906	129	INTRON	INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000530692.5:ENST00000526548.3:ENST00000630913.2:ENST00000529760.5:ENST00000528398.5:ENST00000532603.5:ENST00000356360.9:ENST00000529016.5:ENST00000526961.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	12	152	2	1.69561	1.78817	1.88073	0.0239554	0.0092618	0.11951	0.0855292
chr10	21693975	21694073	4406029	0	+	0.306122	(0.28,0.32]	chr10	406535	51	INTRON	INTRON	MLLT10	ENSG00000078403.17	ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000651298.1:ENST00000377059.7:ENST00000651382.1:ENST00000438473.6:ENST00000420525.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	78	2	1.27925	1.7881649999999998	2.29708	0.0642509	0.0195087	0.19963	0.109483
chr16	22496798	22496898	6322573	0	+	0.5	(0.476,0.515]	chr16	605439	46	INTRON	INTRON	NPIPB5	ENSG00000243716.11	ENST00000415654.5:ENST00000415833.6:ENST00000546168.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	26	215	2	1.75709	1.788125	1.81916	0.00415527	0.00176328	0.056897	0.0389282
chr10	68335211	68335310	4440790	0	+	0.262626	[0,0.28]	chr10	409480	26	INTRON	INTRON	HNRNPH3	ENSG00000096746.18	ENST00000469172.5:ENST00000461310.5:ENST00000265866.12:ENST00000480987.5:ENST00000486854.5:ENST00000467249.1:ENST00000354695.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	25	294	2	1.6694	1.7881	1.9068	0.00801666	0.00507483	0.0766625	0.0646039
chr10	6167507	6167607	4386220	0	+	0.38	(0.378,0.408]	chr10	404834	31	INTRON	INTRON	PFKFB3	ENSG00000170525.21	ENST00000379789.8:ENST00000536985.6:ENST00000639949.1	protein_coding	protein_coding	protein_coding	protein_coding	7	58	2	1.41307	1.7880500000000001	2.16303	0.0510067	0.0252473	0.176593	0.12011
chr20	5559379	5559439	7311808	0	-	0.383333	(0.378,0.408]	chr20	744520	2	INTRON	INTRON	GPCPD1	ENSG00000125772.14	ENST00000379019.7:ENST00000481038.5:ENST00000418646.5:ENST00000633552.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	58	2	1.41307	1.7880500000000001	2.16303	0.0510067	0.0252473	0.176593	0.12011
chr17	62064359	62064452	6810873	0	-	0.365591	(0.35,0.378]	chr17	672958	7	INTRON	INTRON	MED13	ENSG00000108510.10	ENST00000397786.7	protein_coding	protein_coding	protein_coding	protein_coding	9	85	2	1.56881	1.78802	2.00723	0.047622	0.00607439	0.153019	0.0703994
chr16	81540982	81541082	6405961	0	+	0.34	(0.32,0.35]	chr16	615031	451	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6	protein_coding	protein_coding	protein_coding	protein_coding	5	53	2	1.69107	1.787875	1.88468	0.0517392	0.0515071	0.176696	0.159306
chr1	24842131	24842230	47037	0	+	0.383838	(0.378,0.408]	chr1	5799	13	UTR3	UTR3:EXON_MRNA	CLIC4	ENSG00000169504.15	ENST00000488683.1:ENST00000374379.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	14	119	2	1.70171	1.787865	1.87402	0.0121355	0.00704266	0.0910127	0.0754923
chr10	43407767	43407819	4605493	0	-	0.673077	(0.57,1]	chr10	424265	2	UTR5	UTR5:EXON_MRNA:INTRON	HNRNPF	ENSG00000169813.17	ENST00000356053.7:ENST00000357065.8:ENST00000682386.1:ENST00000337970.7	protein_coding	protein_coding	protein_coding	protein_coding	11	48	2	1.62753	1.787865	1.9482	0.0184812	0.00675802	0.116694	0.0711802
chr9	135954994	135955094	4372507	0	-	0.43	(0.408,0.44]	chr9	402548	3	SS5_PROX	SS5_PROX:INTRON	UBAC1	ENSG00000130560.9	ENST00000371756.4:ENST00000478485.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	74	2	1.61024	1.78779	1.96534	0.0216499	0.0200746	0.121073	0.11491
chr12	53014800	53014897	5141498	0	+	0.412371	(0.408,0.44]	chr12	484978	10	INTRON	INTRON	EIF4B	ENSG00000063046.18	ENST00000551527.5:ENST00000549077.5:ENST00000549645.5:ENST00000262056.14:ENST00000420463.7:ENST00000551002.5:ENST00000416762.7:ENST00000550704.5:ENST00000549481.5:ENST00000552490.5:ENST00000550390.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	54	2	1.69566	1.787715	1.87977	0.0453922	0.0282738	0.164236	0.125825
chr17	60257590	60257689	6804518	0	-	0.434343	(0.408,0.44]	chr17	672314	10	INTRON	INTRON	USP32	ENSG00000170832.13	ENST00000300896.9:ENST00000590133.5:ENST00000589335.5:ENST00000393003.7	protein_coding	protein_coding	protein_coding	protein_coding	9	74	2	1.38001	1.787625	2.19524	0.0444754	0.00990486	0.162826	0.0838372
chr17	62049845	62049945	6810726	0	-	0.54	(0.515,0.57]	chr17	672946	139	INTRON	INTRON	MED13	ENSG00000108510.10	ENST00000397786.7	protein_coding	protein_coding	protein_coding	protein_coding	24	170	2	1.6529	1.7876150000000002	1.92233	0.00746749	7.96982e-4	0.074841	0.0258804
chr7	105536949	105537049	3375733	0	+	0.31	(0.28,0.32]	chr7	316052	2	SS5_PROX	SS5_PROX:INTRON	RINT1	ENSG00000135249.8	ENST00000467392.5:ENST00000482041.5:ENST00000493041.5:ENST00000257700.7:ENST00000497979.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	15	146	2	1.42056	1.78745	2.15434	0.0201808	0.00818138	0.121243	0.0768236
chr5	27481032	27481130	2329677	0	+	0.489796	(0.476,0.515]	chr5	225110	29	INTRON	INTRON	PURPL	ENSG00000250337.8	ENST00000651409.1:ENST00000650981.1:ENST00000655107.1:ENST00000657375.2:ENST00000659077.1:ENST00000653835.1:ENST00000657173.1:ENST00000514844.6:ENST00000657424.1:ENST00000660307.1:ENST00000669423.1:ENST00000659860.1:ENST00000652841.1:ENST00000686605.1:ENST00000690628.1:ENST00000510165.6:ENST00000670554.1:ENST00000665451.1:ENST00000667624.1:ENST00000667420.1:ENST00000660639.1:ENST00000668406.1:ENST00000656783.1:ENST00000512067.5:ENST00000664566.1:ENST00000659489.1:ENST00000667264.1:ENST00000670840.1:ENST00000503107.2:ENST00000654039.1:ENST00000687778.1:ENST00000505775.5:ENST00000668103.1:ENST00000664501.1:ENST00000661698.1:ENST00000655438.1:ENST00000514255.1	lncRNA	lncRNA	lncRNA	lncRNA	7	60	2	1.68907	1.787445	1.88582	0.0296007	0.0273268	0.142135	0.123904
chr1	246651127	246651227	350842	0	+	0.27	[0,0.28]	chr1	40540	27	INTRON	INTRON	CNST	ENSG00000162852.14	ENST00000366513.9	protein_coding	protein_coding	protein_coding	protein_coding	7	90	2	1.58141	1.78743	1.99345	0.0540605	0.0211881	0.164565	0.123133
chr1	15637218	15637316	33683	0	+	0.530612	(0.515,0.57]	chr1	4099	30	INTRON	INTRON	DDI2	ENSG00000197312.12	ENST00000480945.6:ENST00000320153.10:ENST00000483899.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	58	2	1.75372	1.7874249999999998	1.82113	0.0386904	0.0118311	0.14279	0.0962115
chr18	9930225	9930323	6873506	0	+	0.265306	[0,0.28]	chr18	680874	49	INTRON	INTRON	VAPA	ENSG00000101558.14	ENST00000400000.7:ENST00000577901.5:ENST00000340541.4:ENST00000585042.5:ENST00000584796.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	82	2	1.43909	1.787395	2.1357	0.0526509	0.0338175	0.178401	0.134476
chr3	185922715	185922813	1886444	0	-	0.265306	[0,0.28]	chr3	188621	7	EXON_MRNA	EXON_MRNA:INTRON	TRA2B	ENSG00000136527.19	ENST00000453386.7:ENST00000492417.5:ENST00000463328.5:ENST00000259043.11:ENST00000487615.5:ENST00000466832.5:ENST00000456380.5:ENST00000382191.4:ENST00000465245.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	82	2	1.43909	1.787395	2.1357	0.0526509	0.0338175	0.178401	0.134476
chr1	227291505	227291605	651451	0	-	0.37	(0.35,0.378]	chr1	77110	264	INTRON	INTRON	CDC42BPA	ENSG00000143776.20	ENST00000366766.8:ENST00000366769.7:ENST00000334218.9:ENST00000366767.7:ENST00000366764.8:ENST00000478573.6:ENST00000682551.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	76	2	1.71411	1.7873299999999999	1.86055	0.0310697	0.0168498	0.13151	0.11068
chr16	85603515	85603615	6415867	0	+	0.61	(0.57,1]	chr16	615470	468	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	22	90	2	1.48129	1.787275	2.09326	0.00762722	9.08895e-4	0.0777238	0.0278396
chr6	75637796	75637896	2905311	0	+	0.34	(0.32,0.35]	chr6	274513	26	INTRON	INTRON	SENP6	ENSG00000112701.18	ENST00000370010.6:ENST00000447266.7:ENST00000327284.12:ENST00000483859.6:ENST00000424947.6	protein_coding	protein_coding	protein_coding	protein_coding	12	119	2	1.69462	1.7872400000000002	1.87986	0.0249051	0.00559781	0.12011	0.0678837
chr17	1835720	1835819	6546035	0	+	0.292929	(0.28,0.32]	chr17	634926	52	INTRON	INTRON	RPA1	ENSG00000132383.12	ENST00000571058.5:ENST00000570451.5:ENST00000254719.10	protein_coding	protein_coding	protein_coding	protein_coding	5	56	2	1.76293	1.787225	1.81152	0.0766478	0.034446	0.196164	0.147767
chr21	37369228	37369327	7406245	0	+	0.292929	(0.28,0.32]	chr21	754846	7	INTRON	INTRON	DYRK1A	ENSG00000157540.22	ENST00000646523.1:ENST00000647425.1:ENST00000647188.2:ENST00000647504.1:ENST00000644942.1:ENST00000338785.8:ENST00000643624.1:ENST00000643551.1:ENST00000426672.6	protein_coding	protein_coding	protein_coding	protein_coding	5	56	2	1.76293	1.787225	1.81152	0.0766478	0.034446	0.196164	0.147767
chr12	119677750	119677849	5234937	0	+	0.454545	(0.44,0.476]	chr12	496714	5	EXON_MRNA	EXON_MRNA:INTRON	PRKAB1	ENSG00000111725.11	ENST00000541640.5:ENST00000229328.10:ENST00000540121.5:ENST00000545223.1:ENST00000545870.1:ENST00000542698.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	57	2	1.30125	1.787145	2.27304	0.0734119	0.0158915	0.190171	0.109464
chr22	21801896	21801995	7560727	0	-	0.313131	(0.28,0.32]	chr22	773376	24	INTRON	INTRON	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	16	169	2	1.72306	1.787145	1.85123	0.0121071	0.00659698	0.0909123	0.0737999
chr11	83158399	83158495	4840806	0	+	0.4375	(0.408,0.44]	chr11	451493	9	EXON_MRNA	EXON_MRNA:INTRON	PCF11	ENSG00000165494.12	ENST00000298281.8:ENST00000530660.5:ENST00000690938.1:ENST00000530304.5:ENST00000533018.1:ENST00000624931.1	protein_coding	protein_coding	protein_coding	protein_coding:TEC	44	361	2	1.6866	1.7871299999999999	1.88766	0.00445799	3.62925e-4	0.0592169	0.0170348
chr9	131148663	131148760	4215860	0	+	0.319588	(0.28,0.32]	chr9	386572	7	INTRON	INTRON	NUP214	ENSG00000126883.19	ENST00000695497.1:ENST00000695498.1:ENST00000695496.1:ENST00000695495.1:ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000651022.1:ENST00000525980.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	78	2	1.54521	1.787115	2.02902	0.0548272	0.0174423	0.165463	0.11269
chr4	80024755	80024855	2170063	0	-	0.37	(0.35,0.378]	chr4	213891	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	ANTXR2	ENSG00000163297.18	ENST00000403729.7:ENST00000449651.5:ENST00000679571.1:ENST00000681710.1:ENST00000680913.1:ENST00000681115.1:ENST00000404191.5:ENST00000346652.10:ENST00000307333.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	108	2	1.78162	1.78709	1.79256	0.0251606	0.00602609	0.12011	0.0700813
chr20	47240035	47240135	7348331	0	-	0.46	(0.44,0.476]	chr20	749270	5	INTRON	INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000467200.6:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000468376.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	61	2	1.64563	1.787	1.92837	0.0363922	0.0222222	0.138959	0.124303
chr18	749313	749413	6940070	0	-	0.47	(0.44,0.476]	chr18	686497	9	INTRON	INTRON	YES1	ENSG00000176105.14	ENST00000584307.5:ENST00000314574.5:ENST00000577961.5	protein_coding	protein_coding	protein_coding	protein_coding	8	67	2	1.62674	1.786985	1.94723	0.0253995	0.0227424	0.133676	0.117618
chr9	133271462	133271562	4369994	0	-	0.48	(0.476,0.515]	chr9	402068	89	INTRON	INTRON	ABO	ENSG00000175164.16	ENST00000679909.1:ENST00000453660.4:ENST00000647353.1:ENST00000611156.4:ENST00000538324.2:ENST00000651471.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	102	2	1.17092	1.7869099999999998	2.4029	0.0586761	0.0016811	0.167915	0.0381232
chr16	89484842	89484942	6543545	0	-	0.43	(0.408,0.44]	chr16	634281	532	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	78	2	1.62843	1.78687	1.94531	0.025242	0.0136489	0.133676	0.0949306
chr6	167935253	167935352	3035450	0	+	0.414141	(0.408,0.44]	chr6	282842	21	INTRON	INTRON	AFDN	ENSG00000130396.21	ENST00000683244.1:ENST00000351017.9:ENST00000344191.8:ENST00000392112.5:ENST00000392108.7:ENST00000400822.7:ENST00000447894.6:ENST00000366809.6:ENST00000366806.6:ENST00000511637.5:ENST00000485634.7:ENST00000507679.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	44	2	1.75791	1.786815	1.81572	0.0626779	0.0378795	0.175915	0.157034
chr18	32094284	32094384	6887283	0	+	0.39	(0.378,0.408]	chr18	682655	10	INTRON	INTRON	RNF138	ENSG00000134758.14	ENST00000261593.8:ENST00000585103.5:ENST00000578914.1:ENST00000580519.1:ENST00000578107.5:ENST00000583733.1:ENST00000257190.9:ENST00000580499.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	46	2	1.53052	1.78672	2.04292	0.0744544	0.0326035	0.192012	0.145164
chr11	108220508	108220608	5035167	0	-	0.43	(0.408,0.44]	chr11	474469	116	INTRON	INTRON	NPAT	ENSG00000149308.17	ENST00000278612.9:ENST00000610253.5:ENST00000531384.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	44	2	1.6306	1.7866650000000002	1.94273	0.0544158	0.0456237	0.182272	0.149888
chr22	20080785	20080885	7478234	0	+	0.44	(0.408,0.44]	chr22	762699	1	SS5_PROX	SS5_PROX:INTRON	DGCR8	ENSG00000128191.16	ENST00000383024.6:ENST00000351989.8:ENST00000457069.1	protein_coding	protein_coding	protein_coding	protein_coding	5	45	2	1.64062	1.7865250000000001	1.93243	0.0557275	0.0441194	0.165463	0.162255
chr5	179700783	179700883	2560703	0	+	0.41	(0.408,0.44]	chr5	244862	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CANX	ENSG00000127022.16	ENST00000681674.1:ENST00000681712.1:ENST00000681903.1:ENST00000680406.1:ENST00000502296.6:ENST00000504734.5:ENST00000452673.6:ENST00000679719.1:ENST00000679523.1:ENST00000679395.1:ENST00000681504.1:ENST00000679642.1:ENST00000681894.1:ENST00000680504.1:ENST00000681265.1:ENST00000680894.1:ENST00000680812.1:ENST00000680614.1:ENST00000680985.1:ENST00000680837.1:ENST00000680827.1:ENST00000681576.1:ENST00000680984.1:ENST00000680042.1:ENST00000681762.1:ENST00000502498.6:ENST00000681476.1:ENST00000681072.1:ENST00000247461.9:ENST00000513246.6:ENST00000680618.1:ENST00000502673.6:ENST00000680092.1:ENST00000506654.6:ENST00000514032.5:ENST00000681733.1:ENST00000679471.1:ENST00000679527.1:ENST00000680006.1:ENST00000681398.1:ENST00000681431.1:ENST00000680013.1:ENST00000681076.1:ENST00000681168.1:ENST00000509563.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	56	2	1.35436	1.7864650000000002	2.21857	0.0603719	0.0209591	0.19151	0.112046
chr5	66144476	66144537	2372488	0	+	0.57377	(0.57,1]	chr5	228643	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	SREK1	ENSG00000153914.16	ENST00000521691.5:ENST00000612404.4:ENST00000523851.1:ENST00000334121.11:ENST00000520058.1:ENST00000520953.5:ENST00000522912.5:ENST00000524111.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	12	54	2	1.55956	1.78632	2.01308	0.0448639	0.001464	0.149888	0.0350622
chr2	27373519	27373599	717695	0	+	0.5375	(0.515,0.57]	chr2	83222	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SNX17	ENSG00000115234.11	ENST00000537606.5:ENST00000233575.7:ENST00000440760.5:ENST00000494893.5:ENST00000427123.5:ENST00000453453.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	60	2	1.62814	1.786315	1.94449	0.035203	0.0122196	0.150193	0.0910127
chr5	141573091	141573191	2739703	0	-	0.5	(0.476,0.515]	chr5	258084	2	SS5_PROX	SS5_PROX:INTRON	DIAPH1	ENSG00000131504.18	ENST00000647433.1:ENST00000389054.8:ENST00000518047.5	protein_coding	protein_coding	protein_coding	protein_coding	10	80	2	1.642	1.786295	1.93059	0.023762	0.0138314	0.118822	0.10247
chr11	86061161	86061261	5014764	0	-	0.46	(0.44,0.476]	chr11	473022	292	INTRON	INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000630913.2:ENST00000528398.5:ENST00000356360.9:ENST00000534412.5:ENST00000531558.1:ENST00000531930.5:ENST00000532041.5:ENST00000525162.5:ENST00000528256.1:ENST00000528411.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	29	240	2	1.69338	1.786155	1.87893	0.00511261	9.80103e-4	0.0627362	0.0287765
chr5	139275422	139275521	2499183	0	+	0.464646	(0.44,0.476]	chr5	238863	6	INTRON	INTRON	MATR3:SNHG4	ENSG00000280987.4:ENSG00000281398.4	ENST00000509990.5:ENST00000506147.5:ENST00000512107.5:ENST00000648842.1:ENST00000448190.6:ENST00000361059.7:ENST00000506188.5:ENST00000507692.5:ENST00000394800.6:ENST00000502929.5:ENST00000504203.5:ENST00000514694.5:ENST00000513259.5:ENST00000507197.5:ENST00000509644.5:ENST00000505016.2:ENST00000505522.6:ENST00000514110.5:ENST00000508735.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	7	60	2	1.56617	1.78613	2.00609	0.0360127	0.0338203	0.152355	0.134476
chr16	31451238	31451334	6475256	0	-	0.458333	(0.44,0.476]	chr16	626084	11	INTRON	INTRON	ENSG00000261474	ENSG00000261474.1	ENST00000569291.1	lncRNA	lncRNA	lncRNA	lncRNA	9	76	2	1.53934	1.786	2.03266	0.0286379	0.0155853	0.126977	0.109411
chr6	156959364	156959464	3008984	0	+	0.3	(0.28,0.32]	chr6	281124	156	INTRON	INTRON	ARID1B	ENSG00000049618.24	ENST00000346085.10:ENST00000636930.2:ENST00000647938.1:ENST00000350026.10:ENST00000674298.1:ENST00000674190.1:ENST00000414678.7:ENST00000638000.1:ENST00000319584.11:ENST00000452544.2:ENST00000637887.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	68	2	1.76048	1.786	1.81152	0.0450149	0.034446	0.149888	0.147767
chr5	78138455	78138554	2649569	0	-	0.323232	(0.32,0.35]	chr5	251700	88	INTRON	INTRON	AP3B1	ENSG00000132842.15	ENST00000519295.6:ENST00000255194.11:ENST00000695515.1:ENST00000695454.1:ENST00000695511.1:ENST00000695453.1:ENST00000695455.1:ENST00000695513.1:ENST00000695488.1:ENST00000695450.1:ENST00000695507.1:ENST00000695512.1:ENST00000695510.1:ENST00000695451.1:ENST00000695447.1:ENST00000695505.1:ENST00000519888.6:ENST00000695514.1:ENST00000517940.2:ENST00000517561.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	80	2	1.69107	1.785885	1.8807	0.0517392	0.0106415	0.159306	0.0915714
chr7	119891304	119891403	3630254	0	-	0.323232	(0.32,0.35]	chr7	337335	901	INTRON	INTRON	LINC02476	ENSG00000225546.6	ENST00000660268.1:ENST00000431071.5:ENST00000426413.2	lncRNA	lncRNA	lncRNA	lncRNA	11	112	2	1.43561	1.785795	2.13598	0.0543363	0.00241817	0.164972	0.0454275
chr1	162566448	162566548	238367	0	+	0.36	(0.35,0.378]	chr1	28703	1	SS5_PROX	SS5_PROX:INTRON	UAP1	ENSG00000117143.14	ENST00000367925.6:ENST00000367926.9	protein_coding	protein_coding	protein_coding	protein_coding	7	66	2	1.77736	1.78578	1.7942	0.0378648	0.0225073	0.141212	0.124921
chr18	9927564	9927662	6873479	0	+	0.397959	(0.378,0.408]	chr18	680874	22	INTRON	INTRON	VAPA	ENSG00000101558.14	ENST00000400000.7:ENST00000577901.5:ENST00000340541.4:ENST00000585042.5:ENST00000584796.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	58	2	1.45934	1.7856400000000001	2.11194	0.0442931	0.0292534	0.162302	0.128055
chr5	133960220	133960320	2725635	0	-	0.4	(0.378,0.408]	chr5	256406	2	SS3_PROX	SS3_PROX:INTRON	C5orf15	ENSG00000113583.8	ENST00000231512.5:ENST00000507191.1:ENST00000509913.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	58	2	1.45934	1.7856400000000001	2.11194	0.0442931	0.0292534	0.162302	0.128055
chr12	95490267	95490366	5193181	0	+	0.323232	(0.32,0.35]	chr12	491147	39	INTRON	INTRON	METAP2	ENSG00000111142.14	ENST00000535095.5:ENST00000546753.5:ENST00000261220.13:ENST00000323666.10:ENST00000553151.5:ENST00000550777.5:ENST00000551840.5:ENST00000549808.1:ENST00000546478.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	59	2	1.68188	1.785485	1.88909	0.0553737	0.031521	0.165463	0.144381
chr16	21878140	21878240	6462025	0	-	0.41	(0.408,0.44]	chr16	623467	120	INTRON	INTRON	NPIPB4	ENSG00000185864.18	ENST00000543449.1:ENST00000538859.1	protein_coding	processed_transcript	protein_coding	processed_transcript	24	201	2	1.67241	1.78545	1.89849	0.00728932	0.00128639	0.0733384	0.0333764
chr7	151500769	151500869	3674734	0	-	0.45	(0.44,0.476]	chr7	341207	22	INTRON	INTRON	RHEB	ENSG00000106615.10	ENST00000262187.10:ENST00000472642.5:ENST00000478470.5:ENST00000496004.5:ENST00000470370.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	93	2	1.64563	1.7854299999999999	1.92523	0.0363922	0.00400446	0.138959	0.057767
chr10	918390	918490	4542454	0	-	0.44	(0.408,0.44]	chr10	419304	150	INTRON	INTRON	LARP4B	ENSG00000107929.16	ENST00000316157.8:ENST00000690516.1:ENST00000476529.5:ENST00000406525.6:ENST00000481118.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	10	89	2	1.58622	1.785375	1.98453	0.0291748	0.00766144	0.141552	0.075364
chr16	85660645	85660745	6416454	0	+	0.58	(0.57,1]	chr16	615524	1	SS3_PROX	SS3_PROX:INTRON	GSE1	ENSG00000131149.19	ENST00000405402.6:ENST00000253458.12:ENST00000393243.5:ENST00000412692.5	protein_coding	protein_coding	protein_coding	protein_coding	19	80	2	1.71815	1.78537	1.85259	0.00348718	0.00347794	0.0540844	0.0522363
chr1	155914601	155914695	564643	0	-	0.276596	[0,0.28]	chr1	67438	4	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	KHDC4	ENSG00000132680.11	ENST00000368321.8:ENST00000368320.7:ENST00000478002.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	82	2	1.47169	1.7853400000000001	2.09899	0.0479607	0.0371453	0.171039	0.139304
chr12	79903406	79903506	5376217	0	-	0.41	(0.408,0.44]	chr12	512793	301	INTRON	INTRON	PPP1R12A	ENSG00000058272.19	ENST00000261207.9:ENST00000450142.7:ENST00000437004.6:ENST00000546369.5:ENST00000550107.5:ENST00000547330.5:ENST00000550510.5	protein_coding	protein_coding	protein_coding	protein_coding	6	53	2	1.64062	1.78532	1.93002	0.0557275	0.022095	0.165463	0.123903
chr14	30997166	30997266	5857581	0	-	0.42	(0.408,0.44]	chr14	556508	328	INTRON	INTRON	STRN3	ENSG00000196792.12	ENST00000355683.9:ENST00000357479.10:ENST00000555358.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	53	2	1.64062	1.78532	1.93002	0.0557275	0.022095	0.165463	0.123903
chr2	206133903	206134003	1317651	0	-	0.51	(0.476,0.515]	chr2	138113	4	INTRON	INTRON	NDUFS1	ENSG00000023228.14	ENST00000233190.11:ENST00000455934.6:ENST00000423725.5:ENST00000457011.5:ENST00000440274.5:ENST00000432169.5:ENST00000449699.5	protein_coding	protein_coding	protein_coding	protein_coding	8	70	2	1.63962	1.7853050000000001	1.93099	0.0346854	0.0140312	0.148144	0.0959618
chr8	23531584	23531684	3715123	0	+	0.36	(0.35,0.378]	chr8	345215	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	SLC25A37	ENSG00000147454.14	ENST00000519973.6:ENST00000290075.10:ENST00000417331.6:ENST00000518881.5:ENST00000519192.1:ENST00000520654.1:ENST00000523930.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	18	157	2	1.59183	1.78523	1.9786300000000001	0.00764155	0.00609631	0.0777987	0.0676501
chr4	2506693	2506792	1912210	0	+	0.444444	(0.44,0.476]	chr4	191953	56	INTRON	INTRON	RNF4	ENSG00000063978.16	ENST00000541204.5:ENST00000502316.5:ENST00000509388.5:ENST00000507247.5:ENST00000314289.13:ENST00000511843.5:ENST00000509258.5:ENST00000513284.5:ENST00000511859.5:ENST00000513643.5:ENST00000506706.5:ENST00000511600.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	69	2	1.68545	1.78514	1.88483	0.0322071	0.0149825	0.132543	0.107704
chr16	16543602	16543702	6311298	0	+	0.25	[0,0.28]	chr16	604098	436	INTRON	INTRON	ENSG00000260126	ENSG00000260126.2	ENST00000567465.2	lncRNA	lncRNA	lncRNA	lncRNA	8	100	2	1.40589	1.7851249999999999	2.16436	0.0666282	0.0120935	0.182954	0.0962599
chr1	28678899	28678998	57918	0	+	0.484848	(0.476,0.515]	chr1	7515	97	INTRON	INTRON	GMEB1	ENSG00000162419.13	ENST00000361872.8:ENST00000294409.2:ENST00000373816.6	protein_coding	protein_coding	protein_coding	protein_coding	7	60	2	1.63962	1.7851050000000002	1.93059	0.0346854	0.023762	0.148144	0.118822
chr2	61500753	61500846	1130834	0	-	0.430108	(0.408,0.44]	chr2	121585	3	INTRON	INTRON	XPO1	ENSG00000082898.19	ENST00000677110.1:ENST00000676553.1:ENST00000677556.1:ENST00000677814.1:ENST00000676771.1:ENST00000677803.1:ENST00000677239.1:ENST00000678790.1:ENST00000677928.1:ENST00000678182.1:ENST00000677150.1:ENST00000678172.1:ENST00000678360.1:ENST00000678081.1:ENST00000676889.1:ENST00000676783.1:ENST00000679035.1:ENST00000677422.1:ENST00000677417.1:ENST00000677813.1:ENST00000676999.1:ENST00000676667.1:ENST00000678263.1:ENST00000678877.1:ENST00000677933.1:ENST00000680228.1:ENST00000677289.1:ENST00000677190.1:ENST00000481073.6:ENST00000401558.7:ENST00000428210.5:ENST00000677290.1:ENST00000677850.1:ENST00000451765.6:ENST00000676789.1:ENST00000678741.1:ENST00000404992.6:ENST00000406957.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	91	2	1.65739	1.78504	1.91269	0.0153219	0.012928	0.100173	0.0990564
chr7	66387243	66387341	3538351	0	-	0.438776	(0.408,0.44]	chr7	330062	40	INTRON	INTRON	LINC00174	ENSG00000179406.9	ENST00000421767.1:ENST00000416572.1:ENST00000438894.1	lncRNA	lncRNA	lncRNA	lncRNA	7	58	2	1.35739	1.784885	2.21238	0.063317	0.0193525	0.177047	0.119831
chr1	161518741	161518840	235225	0	+	0.393939	(0.378,0.408]	chr1	28351	7	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	FCGR2A:ENSG00000289273	ENSG00000143226.15:ENSG00000289273.1	ENST00000271450.12:ENST00000467525.5:ENST00000459885.1:ENST00000491841.1:ENST00000691016.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:nonsense_mediated_decay:lncRNA:processed_transcript	34	303	2	1.53042	1.7848549999999999	2.03929	0.00555112	7.42184e-4	0.0675005	0.0250442
chr5	171392371	171392450	2546613	0	+	0.468354	(0.44,0.476]	chr5	243092	1	SS3_PROX	SS3_PROX:INTRON	NPM1	ENSG00000181163.14	ENST00000517671.5:ENST00000676613.1:ENST00000678186.1:ENST00000678267.1:ENST00000677297.1:ENST00000521672.6:ENST00000679190.1:ENST00000677467.1:ENST00000678280.1:ENST00000676625.1:ENST00000679006.1:ENST00000351986.10:ENST00000676504.1:ENST00000676589.1:ENST00000677357.1:ENST00000679233.1:ENST00000296930.10:ENST00000393820.2:ENST00000521260.2:ENST00000518587.2:ENST00000678774.1:ENST00000677600.1:ENST00000677741.1:ENST00000677325.1:ENST00000677672.1:ENST00000677907.1:ENST00000677904.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	14	108	2	1.34863	1.78483	2.22103	0.0264489	0.00776319	0.122506	0.0787356
chr7	56080270	56080370	3319354	0	+	0.47	(0.44,0.476]	chr7	308593	5	UTR3	UTR3:EXON_MRNA	SUMF2	ENSG00000129103.19	ENST00000651354.1:ENST00000651586.1:ENST00000652303.1:ENST00000275607.13:ENST00000650735.1:ENST00000342190.11:ENST00000436782.5:ENST00000434526.8:ENST00000423763.5:ENST00000438133.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	46	374	2	1.4535	1.78482	2.11614	0.00481246	3.41597e-4	0.0638089	0.0171511
chr2	158458607	158458707	897156	0	+	0.39	(0.378,0.408]	chr2	99340	3	SS5_PROX	SS5_PROX:INTRON	PKP4	ENSG00000144283.23	ENST00000389759.8:ENST00000426248.7:ENST00000389757.7:ENST00000457109.5:ENST00000452162.5:ENST00000411900.5:ENST00000421462.5:ENST00000462335.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	70	2	1.50417	1.78476	2.06535	0.0384675	0.0159849	0.159169	0.101453
chr3	47188088	47188188	1418320	0	+	0.49	(0.476,0.515]	chr3	148980	107	INTRON	INTRON	KIF9-AS1	ENSG00000227398.5	ENST00000429315.3	lncRNA	lncRNA	lncRNA	lncRNA	6	50	2	1.63962	1.7847300000000001	1.92984	0.0466474	0.0346854	0.151522	0.148144
chrX	73977957	73978057	7682438	0	+	0.53	(0.515,0.57]	chrX	786638	96	INTRON	INTRON	JPX	ENSG00000225470.8	ENST00000664637.1:ENST00000639185.1:ENST00000655090.1:ENST00000640437.1:ENST00000660546.1:ENST00000667886.1:ENST00000660840.1:ENST00000657179.1:ENST00000670506.1:ENST00000657910.1:ENST00000662120.1:ENST00000671207.1:ENST00000659254.1:ENST00000656624.1:ENST00000667573.1:ENST00000660856.1:ENST00000660836.1:ENST00000668590.1:ENST00000658649.1:ENST00000414209.6:ENST00000654137.1:ENST00000670994.1:ENST00000602772.5:ENST00000655879.1:ENST00000657372.1:ENST00000657096.1:ENST00000602985.6:ENST00000670685.1:ENST00000670503.1:ENST00000663027.1:ENST00000654995.1:ENST00000602895.6:ENST00000654374.1:ENST00000660087.1:ENST00000665032.1:ENST00000671336.1:ENST00000671476.1:ENST00000667057.1:ENST00000670192.1:ENST00000670464.1:ENST00000665345.1:ENST00000661546.1:ENST00000662543.1:ENST00000602938.6:ENST00000664295.1:ENST00000654005.1:ENST00000669149.1:ENST00000659852.1:ENST00000656509.1:ENST00000602294.6:ENST00000667294.1:ENST00000663470.1:ENST00000602920.6:ENST00000671021.1:ENST00000659849.1:ENST00000667937.1:ENST00000661130.1:ENST00000654196.1:ENST00000655994.1:ENST00000659373.1:ENST00000662239.1:ENST00000670805.1:ENST00000656263.1:ENST00000653069.1:ENST00000657638.1:ENST00000653808.1:ENST00000653929.1:ENST00000653885.1:ENST00000659023.1:ENST00000602546.5:ENST00000659622.1:ENST00000671518.1:ENST00000670408.1	lncRNA	lncRNA	lncRNA	lncRNA	7	52	2	1.68687	1.7847300000000001	1.88259	0.0300837	0.0251849	0.133519	0.129186
chr14	101822740	101822836	5819113	0	+	0.239583	[0,0.28]	chr14	551847	18	INTRON	INTRON	PPP2R5C	ENSG00000078304.20	ENST00000694906.1:ENST00000422945.6:ENST00000554442.5:ENST00000328724.9:ENST00000554504.1:ENST00000553890.1:ENST00000350249.7:ENST00000557621.5:ENST00000556946.1:ENST00000556307.5:ENST00000553730.5:ENST00000557714.1:ENST00000334743.9:ENST00000445439.7:ENST00000557095.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	64	2	1.75741	1.784705	1.812	0.0729149	0.0424454	0.189235	0.161763
chr3	23849082	23849182	1388161	0	+	0.33	(0.32,0.35]	chr3	145385	372	INTRON	INTRON	UBE2E1	ENSG00000170142.12	ENST00000306627.8:ENST00000346855.7:ENST00000495141.5:ENST00000442670.5:ENST00000424381.5:ENST00000467766.5:ENST00000475680.5:ENST00000452012.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	9	86	2	1.47118	1.784555	2.09793	0.0345598	0.0156788	0.148144	0.101453
chr1	162527436	162527536	238295	0	+	0.31	(0.28,0.32]	chr1	28688	50	UTR3	UTR3:EXON_MRNA	UHMK1	ENSG00000152332.16	ENST00000545294.5:ENST00000538489.5:ENST00000489294.2	protein_coding	protein_coding	protein_coding	protein_coding	14	139	2	1.21344	1.7845499999999999	2.35566	0.046778	0.0038391	0.167716	0.0542786
chr17	47118877	47118975	6788658	0	-	0.408163	(0.378,0.408]	chr17	669507	13	UTR3	UTR3:EXON_MRNA	CDC27	ENSG00000004897.12	ENST00000066544.8	protein_coding	protein_coding	protein_coding	protein_coding	6	52	2	1.45712	1.7845300000000002	2.11194	0.0597975	0.0292534	0.189982	0.128055
chr10	5772056	5772155	4544501	0	-	0.383838	(0.378,0.408]	chr10	419766	28	INTRON	INTRON	GDI2	ENSG00000057608.17	ENST00000380191.9:ENST00000447751.5:ENST00000380181.7	protein_coding	protein_coding	protein_coding	protein_coding	6	55	2	1.73164	1.78452	1.8374	0.0441773	0.0299228	0.149888	0.142135
chrX	44916985	44917085	7649040	0	+	0.38	(0.378,0.408]	chrX	782726	426	INTRON	INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000675440.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000621147.5:ENST00000475233.1:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	73	2	1.17446	1.78445	2.39444	0.0614357	0.0122858	0.193423	0.091087
chr7	44415867	44415967	3527539	0	-	0.42	(0.408,0.44]	chr7	328965	22	INTRON	INTRON	NUDCD3	ENSG00000015676.18	ENST00000355451.8:ENST00000460110.5:ENST00000493613.5:ENST00000472246.5:ENST00000464812.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	61	2	1.60344	1.7843900000000001	1.96534	0.0387506	0.0216499	0.160156	0.11491
chr5	138506478	138506574	2732288	0	-	0.447917	(0.44,0.476]	chr5	257361	5	UTR3	UTR3:EXON_MRNA	ETF1	ENSG00000120705.13	ENST00000360541.10:ENST00000499810.6	protein_coding	protein_coding	protein_coding	protein_coding	6	52	2	1.56252	1.7843049999999998	2.00609	0.0465207	0.0360127	0.152355	0.151387
chr7	102643789	102643889	3588958	0	-	0.57	(0.515,0.57]	chr7	335089	11	INTRON	INTRON	ENSG00000267645	ENSG00000267645.5	ENST00000476151.5	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	9	67	2	1.7407	1.78429	1.82788	0.0242347	0.0123396	0.130613	0.0914341
chr6	143190301	143190400	2976487	0	+	0.575758	(0.57,1]	chr6	279160	28	UTR3	UTR3:EXON_MRNA:INTRON	AIG1	ENSG00000146416.19	ENST00000367601.8:ENST00000447498.5:ENST00000646199.1:ENST00000357847.9:ENST00000629020.2:ENST00000275235.8:ENST00000494282.6:ENST00000458219.1	protein_coding	protein_coding	protein_coding	protein_coding	13	56	2	1.70935	1.7842799999999999	1.85921	0.00964816	0.00662994	0.0870749	0.0703181
chr20	58430234	58430333	7289956	0	+	0.454545	(0.44,0.476]	chr20	741674	115	INTRON	INTRON	VAPB	ENSG00000124164.16	ENST00000475243.6:ENST00000395802.7:ENST00000520497.1:ENST00000265619.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	15	125	2	1.53319	1.784215	2.03524	0.0167976	0.00336403	0.103416	0.053249
chr1	32664432	32664532	65964	0	+	0.43	(0.408,0.44]	chr1	8429	17	INTRON	INTRON	RBBP4	ENSG00000162521.19	ENST00000414241.7:ENST00000527118.5:ENST00000373493.10:ENST00000401893.7:ENST00000524393.5:ENST00000492348.6:ENST00000526193.5:ENST00000373485.5:ENST00000477563.6:ENST00000458695.6:ENST00000445722.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	12	102	2	1.53369	1.7841	2.03451	0.0209854	0.00626591	0.122348	0.0685243
chr9	131404143	131404242	4217070	0	+	0.272727	[0,0.28]	chr9	386720	95	INTRON	INTRON	PRRC2B	ENSG00000288701.1	ENST00000682525.1:ENST00000684596.1:ENST00000683519.1:ENST00000682501.1	protein_coding	protein_coding	protein_coding	protein_coding	19	236	2	1.25251	1.78407	2.31563	0.0377992	0.00198284	0.156817	0.0404516
chr20	63875975	63876075	7300795	0	+	0.36	(0.35,0.378]	chr20	743107	1	SS5_PROX	SS5_PROX:INTRON	TPD52L2	ENSG00000101150.18	ENST00000611972.4:ENST00000615907.4:ENST00000369927.8:ENST00000346249.9:ENST00000348257.9:ENST00000352482.8:ENST00000351424.8:ENST00000217121.9:ENST00000358548.4	protein_coding	protein_coding	protein_coding	protein_coding	9	72	2	1.28674	1.783995	2.28125	0.050599	0.0182271	0.17547	0.107842
chrX	73846129	73846229	7837985	0	-	0.51	(0.476,0.515]	chrX	799611	88	EXON_LNCRNA	EXON_LNCRNA:INTRON	XIST	ENSG00000229807.13	ENST00000650627.1:ENST00000434839.3:ENST00000429829.6:ENST00000650366.1:ENST00000650186.1:ENST00000635841.2:ENST00000650637.1:ENST00000648970.1	lncRNA	lncRNA	lncRNA	lncRNA	35	277	2	1.25593	1.7839649999999998	2.312	0.0154706	2.21601e-4	0.108974	0.0136083
chr6	132769469	132769569	3222519	0	-	0.37	(0.35,0.378]	chr6	299575	2	UTR3	UTR3:EXON_MRNA	SLC18B1	ENSG00000146409.12	ENST00000275227.9:ENST00000647932.1:ENST00000650278.1:ENST00000650136.1:ENST00000650298.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	17	160	2	1.20284	1.78395	2.36506	0.0564772	3.18745e-4	0.16701	0.0159645
chr22	21836034	21836134	7561070	0	-	0.47	(0.44,0.476]	chr22	773388	278	INTRON	INTRON	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	6	50	2	1.60176	1.78389	1.96602	0.0426807	0.0389597	0.160861	0.148082
chr4	10101912	10102011	2107276	0	-	0.353535	(0.35,0.378]	chr4	208480	24	INTRON	INTRON	WDR1	ENSG00000071127.17	ENST00000499869.7:ENST00000382451.6:ENST00000382452.6:ENST00000502702.5:ENST00000508079.1:ENST00000264785.11:ENST00000505851.5:ENST00000514319.5:ENST00000515018.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	15	136	2	1.75462	1.7838	1.81298	0.0116735	0.0057845	0.0891371	0.0684334
chrX	155234041	155234140	7740718	0	+	0.262626	[0,0.28]	chrX	792592	52	INTRON	INTRON	VBP1	ENSG00000155959.12	ENST00000535916.5:ENST00000625964.2:ENST00000286428.7:ENST00000460509.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	74	2	1.71089	1.7837749999999999	1.85666	0.0660997	0.0318277	0.181924	0.14477
chr10	21651072	21651172	4405591	0	+	0.53	(0.515,0.57]	chr10	406487	260	INTRON	INTRON	MLLT10	ENSG00000078403.17	ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000651298.1:ENST00000377059.7:ENST00000652258.1:ENST00000651382.1:ENST00000438473.6:ENST00000650921.1:ENST00000651405.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	31	2	1.7074	1.783735	1.86007	0.0779432	0.0526611	0.196685	0.178401
chr4	153489184	153489284	2067480	0	+	0.56	(0.515,0.57]	chr4	204567	149	INTRON	INTRON	TMEM131L	ENSG00000121210.16	ENST00000409663.7:ENST00000445960.5:ENST00000409959.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	31	2	1.7074	1.783735	1.86007	0.0779432	0.0526611	0.196685	0.178401
chr8	123236704	123236802	4041434	0	-	0.520408	(0.515,0.57]	chr8	368578	46	INTRON	INTRON	C8orf76:ZHX1-C8orf76	ENSG00000189376.12:ENSG00000259305.6	ENST00000276704.6:ENST00000519791.5:ENST00000357082.8:ENST00000521310.5:ENST00000518996.1:ENST00000622816.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	31	2	1.7074	1.783735	1.86007	0.0779432	0.0526611	0.196685	0.178401
chrX	130153258	130153358	7887911	0	-	0.56	(0.515,0.57]	chrX	803158	33	INTRON	INTRON	AIFM1	ENSG00000156709.15	ENST00000675050.1:ENST00000676229.1:ENST00000674546.1:ENST00000287295.8:ENST00000675092.1:ENST00000675427.1:ENST00000675857.1:ENST00000346424.6:ENST00000535724.6:ENST00000527892.5:ENST00000416073.7:ENST00000676328.1:ENST00000676436.1:ENST00000674997.1:ENST00000319908.8:ENST00000676048.1:ENST00000675240.1:ENST00000675111.1:ENST00000674555.1:ENST00000675037.1:ENST00000674722.1:ENST00000533719.2:ENST00000675774.1:ENST00000529877.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	31	2	1.7074	1.783735	1.86007	0.0779432	0.0526611	0.196685	0.178401
chr19	18558921	18559017	7033095	0	+	0.395833	(0.378,0.408]	chr19	700892	2	UTR5	UTR5:EXON_MRNA:SS3_PROX:SS5_PROX:INTRON	KXD1	ENSG00000105700.11	ENST00000539106.5:ENST00000540691.5:ENST00000600372.5:ENST00000600796.1:ENST00000222307.9:ENST00000601630.5:ENST00000599000.5:ENST00000595073.5:ENST00000600654.5:ENST00000596785.5:ENST00000599319.5:ENST00000597438.5:ENST00000596244.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	12	106	2	1.56924	1.783625	1.99801	0.0267731	0.00408225	0.123349	0.0581373
chr22	19848996	19849095	7555570	0	-	0.646465	(0.57,1]	chr22	772444	30	UTR3	UTR3:EXON_MRNA:INTRON	GNB1L:RTL10	ENSG00000185838.14:ENSG00000215012.9	ENST00000329517.11:ENST00000403325.5:ENST00000405009.5:ENST00000460402.5:ENST00000481086.1:ENST00000453108.1:ENST00000407472.5:ENST00000405640.1:ENST00000328554.9:ENST00000484072.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	56	2	1.23894	1.783505	2.32807	0.0497875	9.96313e-4	0.17488	0.0288906
chr17	31999681	31999778	6596319	0	+	0.28866000000000003	(0.28,0.32]	chr17	641620	8	UTR3	UTR3:EXON_MRNA	SUZ12	ENSG00000178691.11	ENST00000322652.10:ENST00000580398.1	protein_coding	protein_coding	protein_coding	protein_coding	8	86	2	1.59898	1.7835	1.96802	0.030453	0.0251578	0.143385	0.12011
chr2	101257790	101257872	835913	0	+	0.439024	(0.408,0.44]	chr2	93857	1	CDS	CDS:EXON_MRNA	CNOT11	ENSG00000158435.8	ENST00000289382.8	protein_coding	protein_coding	protein_coding	protein_coding	6	53	2	1.53263	1.7834699999999999	2.03431	0.0733439	0.0154896	0.190051	0.108998
chr7	72903484	72903584	3330033	0	+	0.41	(0.408,0.44]	chr7	309565	120	INTRON	INTRON	POM121	ENSG00000196313.13	ENST00000627934.3:ENST00000395270.5	protein_coding	protein_coding	protein_coding	protein_coding	12	101	2	1.71548	1.78345	1.85142	0.0127811	0.0101701	0.0926667	0.089002
chr17	62047357	62047456	6810701	0	-	0.383838	(0.378,0.408]	chr17	672946	114	INTRON	INTRON	MED13	ENSG00000108510.10	ENST00000397786.7	protein_coding	protein_coding	protein_coding	protein_coding	11	98	2	1.51701	1.783425	2.04984	0.0404516	0.00321033	0.144865	0.0522684
chr4	1954347	1954436	1911427	0	+	0.483146	(0.476,0.515]	chr4	191817	4	SS3_PROX	SS3_PROX:SS5_PROX:INTRON	NSD2	ENSG00000109685.19	ENST00000508803.6:ENST00000382891.9:ENST00000353275.9:ENST00000382892.6:ENST00000382895.7:ENST00000312087.10:ENST00000677559.1:ENST00000482415.6:ENST00000514329.5:ENST00000502425.5:ENST00000382888.3:ENST00000505643.5:ENST00000503207.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	51	2	1.50151	1.78321	2.06491	0.054954	0.0304733	0.165463	0.143385
chr4	86974068	86974167	1994187	0	+	0.363636	(0.35,0.378]	chr4	199036	1	INTRON	INTRON	AFF1	ENSG00000172493.23	ENST00000504956.5:ENST00000395146.9:ENST00000507468.5:ENST00000674009.1:ENST00000503477.5:ENST00000511442.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	66	2	1.68908	1.78317	1.87726	0.0301354	0.0297629	0.142482	0.12908
chr10	73009389	73009472	4646957	0	-	0.39759	(0.378,0.408]	chr10	427471	2	SS5_PROX	SS5_PROX:INTRON	P4HA1	ENSG00000122884.13	ENST00000394890.7:ENST00000307116.6:ENST00000373008.6:ENST00000440381.5:ENST00000263556.3	protein_coding	protein_coding	protein_coding	protein_coding	7	63	2	1.63458	1.783055	1.93153	0.0573057	0.0127237	0.167723	0.0986314
chr17	57994453	57994552	6799921	0	-	0.414141	(0.408,0.44]	chr17	671422	48	EXON_LNCRNA	EXON_LNCRNA:INTRON	ENSG00000266086:ENSG00000264112	ENSG00000266086.3:ENSG00000264112.1	ENST00000578794.2:ENST00000665125.1:ENST00000585065.1	protein_coding	nonsense_mediated_decay	protein_coding:lncRNA	nonsense_mediated_decay:lncRNA:processed_transcript	7	56	2	1.45162	1.783045	2.11447	0.0451203	0.0285207	0.163518	0.12666
chr7	64350344	64350444	3319808	0	+	0.34	(0.32,0.35]	chr7	308641	13	UTR3	UTR3:EXON_MRNA	ZNF736	ENSG00000234444.10	ENST00000423484.3	protein_coding	protein_coding	protein_coding	protein_coding	10	103	2	1.65179	1.782965	1.91414	0.0245569	0.011737	0.131869	0.0894475
chr19	18837081	18837181	7033371	0	+	0.48	(0.476,0.515]	chr19	700970	34	INTRON	INTRON	UPF1	ENSG00000005007.13	ENST00000262803.10:ENST00000599848.5:ENST00000601981.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	60	2	1.54629	1.78291	2.01953	0.0484352	0.0163662	0.153635	0.109586
chr6	15262455	15262555	2823110	0	+	0.33	(0.32,0.35]	chr6	265190	131	INTRON	INTRON	JARID2	ENSG00000008083.14	ENST00000341776.7:ENST00000397311.4	protein_coding	protein_coding	protein_coding	protein_coding	10	102	2	1.72098	1.7827950000000001	1.84461	0.0192903	0.0150305	0.119831	0.0994339
chr7	111239703	111239803	3620879	0	-	0.38	(0.378,0.408]	chr7	337093	2758	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	63	2	1.6165	1.78278	1.94906	0.0374185	0.023282	0.155878	0.118176
chr7	87152944	87153044	3345621	0	+	0.38	(0.378,0.408]	chr7	311612	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	DMTF1	ENSG00000135164.19	ENST00000413276.6:ENST00000447863.5:ENST00000579677.5:ENST00000425406.5:ENST00000446796.6:ENST00000420131.5:ENST00000414630.6:ENST00000547146.6:ENST00000579850.5:ENST00000453049.5:ENST00000331242.12:ENST00000430405.7:ENST00000449088.7:ENST00000448598.5:ENST00000428819.5:ENST00000432937.6:ENST00000584619.5:ENST00000432366.6:ENST00000423590.6:ENST00000394703.9:ENST00000584457.5:ENST00000580710.5:ENST00000579592.5:ENST00000434534.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	22	191	2	1.56161	1.782765	2.00392	0.0109284	0.0012825	0.0873034	0.0333518
chr15	89259924	89260020	6095892	0	+	0.333333	(0.32,0.35]	chr15	580091	7	INTRON	INTRON	FANCI	ENSG00000140525.20	ENST00000674831.1:ENST00000300027.12:ENST00000568670.5:ENST00000567891.5:ENST00000310775.12:ENST00000696717.1:ENST00000676003.1:ENST00000565255.5:ENST00000564920.5:ENST00000696718.1:ENST00000447611.6:ENST00000696719.1:ENST00000567996.5:ENST00000563250.5:ENST00000565522.5:ENST00000696720.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	71	2	1.63843	1.78274	1.92705	0.0360919	0.0267365	0.152563	0.123349
chr15	66599230	66599330	6050953	0	+	0.34	(0.32,0.35]	chr15	576221	166	INTRON	INTRON	LINC01169	ENSG00000259471.1	ENST00000558797.1	lncRNA	lncRNA	lncRNA	lncRNA	10	101	2	1.74637	1.782645	1.81892	0.0210156	0.0134787	0.112328	0.101363
chr12	116212954	116213054	5424901	0	-	0.37	(0.35,0.378]	chr12	518271	318	INTRON	INTRON	MED13L	ENSG00000123066.9	ENST00000281928.9:ENST00000650226.1:ENST00000548743.2:ENST00000647567.1:ENST00000551197.2	protein_coding	protein_coding	protein_coding	protein_coding	10	95	2	1.33846	1.782565	2.22667	0.0687435	0.0022763	0.184298	0.0437013
chr6	17650566	17650662	3065638	0	-	0.322917	(0.32,0.35]	chr6	284818	9	INTRON	INTRON	NUP153	ENSG00000124789.12	ENST00000613258.4:ENST00000537253.5:ENST00000262077.3	protein_coding	protein_coding	protein_coding	protein_coding	16	148	2	1.5632	1.7825600000000001	2.00192	0.0104824	0.00848699	0.09058	0.0778788
chr1	89824965	89825064	159562	0	+	0.393939	(0.378,0.408]	chr1	17270	24	INTRON	INTRON	LRRC8D	ENSG00000171492.14	ENST00000525774.5:ENST00000337338.9:ENST00000394593.7	protein_coding	protein_coding	protein_coding	protein_coding	8	72	2	1.48005	1.782425	2.0848	0.0596711	0.00697927	0.168954	0.0754576
chr17	57995944	57996043	6799936	0	-	0.343434	(0.32,0.35]	chr17	671423	12	INTRON	INTRON	ENSG00000266086	ENSG00000266086.3	ENST00000578794.2:ENST00000665125.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	17	168	2	1.60167	1.782375	1.96308	0.0179272	0.00232334	0.106518	0.0442989
chr7	111356777	111356877	3622050	0	-	0.48	(0.476,0.515]	chr7	337093	3929	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	79	2	1.68907	1.7822550000000001	1.87544	0.0296007	0.0113658	0.142135	0.0886611
chr1	55144703	55144802	465171	0	-	0.494949	(0.476,0.515]	chr1	56183	1	INTRON	INTRON	USP24	ENSG00000162402.14	ENST00000294383.7	protein_coding	protein_coding	protein_coding	protein_coding	4	36	2	1.72558	1.78219	1.8388	0.0767648	0.0564473	0.196164	0.184423
chr16	29604232	29604332	6471643	0	-	0.51	(0.476,0.515]	chr16	625301	94	INTRON	INTRON	ENSG00000288632	ENSG00000288632.1	ENST00000675579.1	lncRNA	lncRNA	lncRNA	lncRNA	4	36	2	1.72558	1.78219	1.8388	0.0767648	0.0564473	0.196164	0.184423
chr19	9648968	9649068	7133237	0	-	0.48	(0.476,0.515]	chr19	718879	73	UTR3	UTR3:EXON_MRNA	ZNF562	ENSG00000171466.10	ENST00000453372.7:ENST00000293648.8	protein_coding	protein_coding	protein_coding	protein_coding	4	36	2	1.72558	1.78219	1.8388	0.0767648	0.0564473	0.196164	0.184423
chr9	127459571	127459660	4200384	0	+	0.494382	(0.476,0.515]	chr9	383475	1	INTRON	INTRON	LRSAM1	ENSG00000148356.15	ENST00000675224.1:ENST00000373324.8:ENST00000674771.1:ENST00000675641.1:ENST00000498513.6:ENST00000675572.1:ENST00000300417.11:ENST00000674784.1:ENST00000675789.1:ENST00000676349.1:ENST00000676336.1:ENST00000676170.1:ENST00000675448.1:ENST00000323301.8:ENST00000675141.1:ENST00000472068.2:ENST00000674516.1:ENST00000675883.1:ENST00000676014.1:ENST00000674970.1:ENST00000675253.1:ENST00000675657.1:ENST00000676318.1:ENST00000675945.1:ENST00000675213.1:ENST00000373322.1:ENST00000675445.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	36	2	1.72558	1.78219	1.8388	0.0767648	0.0564473	0.196164	0.184423
chr1	32323378	32323478	65035	0	+	0.45	(0.44,0.476]	chr1	8331	62	INTRON	INTRON	HDAC1	ENSG00000116478.12	ENST00000373548.8:ENST00000481281.5:ENST00000463172.5:ENST00000428704.1:ENST00000472928.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	77	2	1.60467	1.7821449999999999	1.95962	0.0411383	0.00707371	0.1451	0.0754923
chr12	51005762	51005848	5324580	0	-	0.465116	(0.44,0.476]	chr12	507715	2	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SLC11A2	ENSG00000110911.17	ENST00000547688.7:ENST00000644495.1:ENST00000643884.1:ENST00000546636.5:ENST00000547198.5:ENST00000394904.9:ENST00000262052.9:ENST00000643123.1:ENST00000646740.1:ENST00000642227.1:ENST00000541174.6:ENST00000545993.7:ENST00000546743.5:ENST00000547510.5:ENST00000546488.5:ENST00000547579.5:ENST00000550714.5:ENST00000547732.5:ENST00000549110.5:ENST00000548193.5:ENST00000646988.1:ENST00000549625.1:ENST00000549193.5:ENST00000681324.1:ENST00000550995.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	77	2	1.60467	1.7821449999999999	1.95962	0.0411383	0.00707371	0.1451	0.0754923
chr16	71924281	71924381	6386914	0	+	0.51	(0.476,0.515]	chr16	614135	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	IST1	ENSG00000182149.21	ENST00000544564.5:ENST00000541571.6:ENST00000535424.5:ENST00000606369.5:ENST00000378799.11:ENST00000538565.5:ENST00000329908.12:ENST00000538850.5:ENST00000378798.9:ENST00000439924.6:ENST00000456820.2:ENST00000536027.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	14	124	2	1.30826	1.782095	2.25593	0.0587053	5.29358e-4	0.167915	0.0207276
chr15	48342078	48342177	6018921	0	+	0.272727	[0,0.28]	chr15	573644	1	UTR3	UTR3:EXON_MRNA	DUT	ENSG00000128951.14	ENST00000559416.5:ENST00000558813.5:ENST00000331200.8:ENST00000558978.5:ENST00000455976.6:ENST00000559540.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	117	2	1.47169	1.7818649999999998	2.09204	0.0479607	0.0120948	0.171039	0.0908218
chr13	19708653	19708750	5552196	0	-	0.350515	(0.35,0.378]	chr13	530690	25	INTRON	INTRON	PSPC1	ENSG00000121390.19	ENST00000471658.5:ENST00000492741.5:ENST00000635562.1:ENST00000338910.9:ENST00000619300.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	102	2	1.71907	1.78169	1.84431	0.0218101	0.00829753	0.11491	0.0815587
chrX	68520578	68520676	7673991	0	+	0.438776	(0.408,0.44]	chrX	785425	14	INTRON	INTRON	YIPF6	ENSG00000181704.12	ENST00000451537.5:ENST00000374622.3:ENST00000374643.7:ENST00000462683.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	61	2	1.58026	1.7816800000000002	1.9831	0.0444624	0.018491	0.149888	0.116694
chr2	87455472	87455558	825917	0	+	0.383721	(0.378,0.408]	chr2	92399	4	EXON_LNCRNA	EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CYTOR:ENSG00000284879	ENSG00000222041.12:ENSG00000284879.1	ENST00000642796.1:ENST00000643589.1:ENST00000642451.1:ENST00000646386.1:ENST00000644478.1:ENST00000409139.6:ENST00000331944.10:ENST00000644125.1:ENST00000643743.1:ENST00000644577.1:ENST00000643276.1:ENST00000409898.2:ENST00000419680.6:ENST00000645257.1:ENST00000644976.1:ENST00000643070.1:ENST00000646855.1:ENST00000414584.1:ENST00000455131.5:ENST00000646636.1:ENST00000642293.1:ENST00000423846.5	lncRNA	lncRNA	lncRNA	lncRNA	11	94	2	1.4946	1.78166	2.06872	0.024523	0.00895678	0.131869	0.0800073
chr4	860321	860421	2093543	0	-	0.4	(0.378,0.408]	chr4	206857	2	INTRON	INTRON	GAK	ENSG00000178950.18	ENST00000314167.9:ENST00000511163.5:ENST00000509566.1:ENST00000515868.5:ENST00000511980.5:ENST00000510799.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	52	2	1.6165	1.781655	1.94681	0.0457723	0.0374185	0.155878	0.149888
chr6	17661052	17661152	3065744	0	-	0.55	(0.515,0.57]	chr6	284824	88	INTRON	INTRON	NUP153	ENSG00000124789.12	ENST00000613258.4:ENST00000537253.5:ENST00000262077.3	protein_coding	protein_coding	protein_coding	protein_coding	8	57	2	1.64415	1.781655	1.91916	0.0231902	0.0231656	0.127036	0.118148
chr10	96961869	96961968	4504276	0	+	0.343434	(0.32,0.35]	chr10	414589	35	UTR3	UTR3:EXON_MRNA:INTRON	LCOR	ENSG00000196233.14	ENST00000371103.8:ENST00000421806.4:ENST00000675117.1:ENST00000674725.1	protein_coding	protein_coding	protein_coding	protein_coding	5	51	2	1.72898	1.7815699999999999	1.83416	0.0631198	0.0425433	0.176946	0.161951
chr16	30727794	30727890	6338958	0	+	0.5625	(0.515,0.57]	chr16	607822	17	INTRON	INTRON	SRCAP	ENSG00000080603.17	ENST00000262518.9:ENST00000395059.6	protein_coding	protein_coding	protein_coding	protein_coding	8	57	2	1.49552	1.78155	2.06758	0.0385038	0.0140038	0.159277	0.0959618
chr16	16506916	16507016	6310931	0	+	0.32	(0.28,0.32]	chr16	604098	69	INTRON	INTRON	ENSG00000260126	ENSG00000260126.2	ENST00000567465.2	lncRNA	lncRNA	lncRNA	lncRNA	11	118	2	1.32455	1.78141	2.23827	0.0474504	0.00601373	0.169423	0.0674604
chr7	140796262	140796362	3662433	0	-	0.46	(0.44,0.476]	chr7	340057	14	INTRON	INTRON	BRAF	ENSG00000157764.14	ENST00000496384.7:ENST00000644969.2:ENST00000644120.1:ENST00000642875.1:ENST00000646891.1:ENST00000644905.1:ENST00000642228.1:ENST00000288602.11:ENST00000646730.1:ENST00000644650.1:ENST00000647434.1:ENST00000497784.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	44	2	1.55662	1.781355	2.00609	0.0688347	0.0360127	0.184298	0.152355
chr22	21604556	21604656	7482073	0	+	0.29	(0.28,0.32]	chr22	763238	112	INTRON	INTRON	UBE2L3	ENSG00000185651.16	ENST00000458578.6:ENST00000545681.2:ENST00000696046.1:ENST00000342192.9:ENST00000496722.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	78	2	1.38178	1.78135	2.18092	0.047484	0.0271832	0.169527	0.123904
chr6	53286568	53286667	3107558	0	-	0.262626	[0,0.28]	chr6	291014	85	INTRON	INTRON	ELOVL5	ENSG00000012660.14	ENST00000370918.8:ENST00000542638.5:ENST00000304434.11:ENST00000485336.5:ENST00000465983.5:ENST00000486973.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	78	2	1.60899	1.781275	1.95356	0.0503341	0.0463152	0.166231	0.156383
chr7	23470395	23470491	3503670	0	-	0.479167	(0.476,0.515]	chr7	326928	4	UTR5	UTR5:EXON_MRNA	IGF2BP3	ENSG00000136231.14	ENST00000258729.8:ENST00000421467.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	14	118	2	1.56702	1.781115	1.99521	0.0257979	0.00214597	0.121115	0.0430581
chr6	35351845	35351945	2852071	0	+	0.46	(0.44,0.476]	chr6	269491	43	INTRON	INTRON	PPARD	ENSG00000112033.14	ENST00000418635.6:ENST00000448077.6:ENST00000360694.8:ENST00000311565.4:ENST00000337400.6	protein_coding	protein_coding	protein_coding	protein_coding	16	130	2	1.63565	1.781085	1.92652	0.00778789	0.00669501	0.0787356	0.0707084
chr6	17658673	17658772	3065720	0	-	0.343434	(0.32,0.35]	chr6	284824	64	INTRON	INTRON	NUP153	ENSG00000124789.12	ENST00000613258.4:ENST00000537253.5:ENST00000262077.3	protein_coding	protein_coding	protein_coding	protein_coding	22	202	2	1.39834	1.7810549999999998	2.16377	0.0143775	0.00230068	0.104551	0.0428247
chr7	111384671	111384771	3622329	0	-	0.42	(0.408,0.44]	chr7	337093	4208	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	70	2	1.7519	1.7810350000000001	1.81017	0.0239555	0.0217525	0.129259	0.11491
chr7	105520955	105521054	3604851	0	-	0.333333	(0.32,0.35]	chr7	336276	121	INTRON	INTRON	PUS7	ENSG00000091127.14	ENST00000481939.5:ENST00000469408.6:ENST00000356362.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	74	2	1.72898	1.7809650000000001	1.83295	0.0425433	0.0224097	0.161951	0.11692
chr10	3777274	3777372	4543117	0	-	0.418367	(0.408,0.44]	chr10	419496	14	UTR3	UTR3:EXON_MRNA:INTRON	KLF6	ENSG00000067082.15	ENST00000497571.6:ENST00000461124.1:ENST00000542957.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	14	114	2	1.50282	1.7808450000000002	2.05887	0.0162433	0.0056711	0.109464	0.0653997
chr11	117169076	117169175	4869345	0	+	0.424242	(0.408,0.44]	chr11	454464	15	UTR3	UTR3:EXON_MRNA:INTRON	PAFAH1B2	ENSG00000168092.14	ENST00000419197.6:ENST00000527958.6:ENST00000529887.6:ENST00000526888.1:ENST00000530272.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	16	136	2	1.63421	1.78078	1.92735	0.00983247	0.00550465	0.0838128	0.0672816
chr2	227560525	227560623	1026559	0	+	0.387755	(0.378,0.408]	chr2	109645	62	UTR3	UTR3:EXON_MRNA	AGFG1	ENSG00000173744.18	ENST00000310078.13	protein_coding	protein_coding	protein_coding	protein_coding	8	70	2	1.45934	1.7807300000000001	2.10212	0.0442931	0.0141232	0.162302	0.0959618
chr8	37869130	37869229	3935635	0	-	0.535354	(0.515,0.57]	chr8	360553	57	INTRON	INTRON	RAB11FIP1	ENSG00000156675.16	ENST00000330843.9:ENST00000287263.8:ENST00000522727.5:ENST00000523182.5:ENST00000522774.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	11	79	2	1.76853	1.7806899999999999	1.79285	0.0141154	0.0102412	0.0959618	0.089002
chr1	11023071	11023155	24669	0	+	0.369048	(0.35,0.378]	chr1	2604	6	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TARDBP	ENSG00000120948.19	ENST00000639083.1:ENST00000639599.1:ENST00000629725.2:ENST00000240185.8:ENST00000614757.4:ENST00000473869.5:ENST00000315091.7:ENST00000616545.4:ENST00000621790.4:ENST00000649624.1:ENST00000622057.4:ENST00000617172.4:ENST00000611963.4:ENST00000619555.4:ENST00000620632.4:ENST00000610369.4:ENST00000614494.1:ENST00000611136.4:ENST00000477447.6:ENST00000612542.1:ENST00000620505.1:ENST00000621573.1:ENST00000611008.4:ENST00000613177.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	43	386	2	1.62068	1.7806799999999998	1.94068	0.00249898	0.00120219	0.0463495	0.0316258
chr19	1427245	1427345	6995299	0	+	0.62	(0.57,1]	chr19	693206	10	EXON_MRNA	EXON_MRNA:INTRON	DAZAP1	ENSG00000071626.17	ENST00000336761.10:ENST00000233078.9:ENST00000592522.5:ENST00000586579.5:ENST00000587079.5:ENST00000592453.2:ENST00000589484.5:ENST00000585485.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	16	60	2	1.07125	1.78063	2.49001	0.0557536	8.49418e-4	0.18407	0.0267232
chr3	42615373	42615473	1406119	0	+	0.32	(0.28,0.32]	chr3	147655	43	INTRON	INTRON	NKTR	ENSG00000114857.19	ENST00000468735.6:ENST00000487466.5:ENST00000429888.5:ENST00000232978.13:ENST00000442970.5:ENST00000445842.1:ENST00000478488.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	115	2	1.38367	1.780615	2.17756	0.0292345	0.0130851	0.141787	0.0934394
chr17	22111092	22111192	6578774	0	+	0.42	(0.408,0.44]	chr17	639556	198	INTRON	INTRON	UBBP4	ENSG00000263563.7	ENST00000648259.1:ENST00000688301.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	15	120	2	1.52666	1.7805849999999999	2.03451	0.0125782	0.00626591	0.0980703	0.0685243
chr3	177192465	177192565	1872399	0	-	0.39	(0.378,0.408]	chr3	187438	212	INTRON	INTRON	TBL1XR1	ENSG00000177565.18	ENST00000457928.7:ENST00000430069.5:ENST00000673974.1:ENST00000352800.10:ENST00000422442.6:ENST00000428970.5:ENST00000424913.5:ENST00000437738.5:ENST00000431421.5:ENST00000635794.1:ENST00000630796.2:ENST00000450267.5:ENST00000630833.2:ENST00000431674.5:ENST00000422066.5:ENST00000443315.5:ENST00000627825.2:ENST00000427349.5:ENST00000413084.5:ENST00000637137.1:ENST00000491623.2:ENST00000637544.1:ENST00000636187.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	10	87	2	1.674	1.78058	1.88716	0.017192	0.0159536	0.109464	0.104099
chr8	129574222	129574321	4061033	0	-	0.363636	(0.35,0.378]	chr8	369688	4	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1:ENST00000676273.1:ENST00000667643.1:ENST00000668791.1:ENST00000663716.1:ENST00000663572.1:ENST00000667962.1:ENST00000674877.1:ENST00000675316.1:ENST00000674656.1:ENST00000446592.7:ENST00000667341.1:ENST00000675186.1:ENST00000652971.1:ENST00000661447.1:ENST00000674863.1:ENST00000675498.1:ENST00000675527.1:ENST00000676108.1:ENST00000657647.1:ENST00000675589.1:ENST00000675913.1:ENST00000675109.1:ENST00000671632.1:ENST00000671311.1:ENST00000676099.1:ENST00000660652.1:ENST00000675044.1:ENST00000675435.1:ENST00000676069.1:ENST00000675532.1:ENST00000674762.1:ENST00000523151.6:ENST00000675948.1:ENST00000665364.1:ENST00000657251.1:ENST00000675166.1:ENST00000674883.1:ENST00000675867.1:ENST00000674580.1:ENST00000675393.1:ENST00000520048.1:ENST00000674906.1:ENST00000676030.1:ENST00000670588.1:ENST00000675072.1:ENST00000664936.1:ENST00000652914.1:ENST00000657069.1:ENST00000674882.1:ENST00000669935.1	lncRNA	lncRNA	lncRNA	lncRNA	15	131	2	1.39062	1.78043	2.17024	0.0228791	0.00397513	0.125687	0.0549214
chr11	86064456	86064556	5014797	0	-	0.48	(0.476,0.515]	chr11	473022	325	INTRON	INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000630913.2:ENST00000528398.5:ENST00000356360.9:ENST00000534412.5:ENST00000531558.1:ENST00000531930.5:ENST00000532041.5:ENST00000525162.5:ENST00000528256.1:ENST00000528411.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	56	424	2	1.48583	1.78041	2.07499	0.00301368	4.50394e-4	0.0507423	0.019638
chr7	128009742	128009842	3406004	0	+	0.36	(0.35,0.378]	chr7	318194	12	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000486037.1:ENST00000484767.5:ENST00000470723.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	15	140	2	1.63002	1.78033	1.93064	0.012123	0.005615	0.0963277	0.065373
chr1	17408506	17408603	384662	0	-	0.587629	(0.57,1]	chr1	45432	19	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RCC2	ENSG00000179051.14	ENST00000375436.9:ENST00000474892.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	28	115	2	1.60035	1.7803	1.96025	0.00229393	0.0014394	0.0428247	0.0347747
chr8	52708492	52708591	3951049	0	-	0.40404	(0.378,0.408]	chr8	362390	212	INTRON	INTRON	RB1CC1	ENSG00000023287.13	ENST00000025008.10:ENST00000435644.6:ENST00000521611.1:ENST00000518710.5:ENST00000517963.1:ENST00000518211.1:ENST00000518468.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	80	2	1.55037	1.7802850000000001	2.0102	0.0365151	0.00940766	0.138959	0.0861183
chrX	136879953	136880024	7897691	0	-	0.478873	(0.476,0.515]	chrX	804187	1	INTRON	INTRON	RBMX	ENSG00000147274.14	ENST00000431446.7:ENST00000568578.5:ENST00000464781.5:ENST00000320676.11:ENST00000562646.5:ENST00000565438.1:ENST00000567262.5:ENST00000563370.1:ENST00000565907.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	67	2	1.56702	1.780215	1.99341	0.037389	0.0257979	0.155878	0.121115
chr6	53334046	53334146	3108040	0	-	0.3	(0.28,0.32]	chr6	291049	380	INTRON	INTRON	ELOVL5	ENSG00000012660.14	ENST00000370918.8:ENST00000542638.5:ENST00000304434.11:ENST00000485336.5:ENST00000465983.5:ENST00000486973.1:ENST00000370913.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	64	2	1.64429	1.7802	1.91611	0.0539102	0.0365539	0.164153	0.153932
chr7	76570313	76570413	3340571	0	+	0.44	(0.408,0.44]	chr7	311170	184	INTRON	INTRON	ENSG00000205485	ENSG00000205485.13	ENST00000418663.5:ENST00000450661.1:ENST00000423084.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	9	77	2	1.73753	1.78014	1.82275	0.0275537	0.0123226	0.123904	0.097243
chr2	62303435	62303535	790361	0	+	0.52	(0.515,0.57]	chr2	88708	56	INTRON	INTRON	ENSG00000228541	ENSG00000228541.2	ENST00000688476.1:ENST00000689590.1:ENST00000687402.1:ENST00000687773.1	lncRNA	lncRNA	lncRNA	lncRNA	6	45	2	1.7492	1.7801	1.811	0.0382504	0.0325989	0.15832	0.133687
chr15	65764296	65764395	6209513	0	-	0.525253	(0.515,0.57]	chr15	592611	25	INTRON	INTRON	DENND4A	ENSG00000174485.16	ENST00000443035.8:ENST00000431932.6:ENST00000564674.5:ENST00000568515.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	13	93	2	1.46708	1.780055	2.09303	0.0272921	0.00230048	0.123904	0.0439974
chr21	37080308	37080407	7404891	0	+	0.282828	(0.28,0.32]	chr21	754521	65	INTRON	INTRON	TTC3	ENSG00000182670.14	ENST00000492275.6:ENST00000418766.6:ENST00000485402.5:ENST00000450533.6:ENST00000438055.5:ENST00000696812.1:ENST00000696811.1:ENST00000463216.6:ENST00000481605.6:ENST00000540756.5:ENST00000494243.5:ENST00000399010.5:ENST00000411496.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	10	105	2	1.76048	1.78002	1.79956	0.0450149	0.00854778	0.149888	0.0836935
chr21	37390296	37390396	7406457	0	+	0.34	(0.32,0.35]	chr21	754850	148	INTRON	INTRON	DYRK1A	ENSG00000157540.22	ENST00000646523.1:ENST00000647425.1:ENST00000647188.2:ENST00000647504.1:ENST00000644942.1:ENST00000338785.8:ENST00000643624.1:ENST00000643551.1:ENST00000426672.6:ENST00000398960.7	protein_coding	protein_coding	protein_coding	protein_coding	7	71	2	1.53859	1.77996	2.02133	0.0534261	0.017146	0.162935	0.111072
chr9	4997103	4997203	4095941	0	+	0.49	(0.476,0.515]	chr9	373235	107	INTRON	INTRON	JAK2	ENSG00000096968.14	ENST00000636127.1:ENST00000476574.5:ENST00000381652.4	protein_coding	protein_coding	protein_coding	protein_coding	7	61	2	1.52615	1.77976	2.03337	0.0739267	0.00851546	0.190914	0.0833995
chr17	66335294	66335394	6662624	0	+	0.47	(0.44,0.476]	chr17	650320	288	INTRON	INTRON	PRKCA	ENSG00000154229.12	ENST00000413366.8:ENST00000578063.5:ENST00000583361.1:ENST00000284384.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	12	100	2	1.76961	1.779755	1.7899	0.0158205	0.00808024	0.101453	0.0807319
chr7	105015834	105015934	3374634	0	+	0.32	(0.28,0.32]	chr7	315854	9	INTRON	INTRON	KMT2E	ENSG00000005483.22	ENST00000622386.2:ENST00000257745.9:ENST00000334884.9:ENST00000311117.8:ENST00000478990.5:ENST00000480368.5:ENST00000495267.5:ENST00000476671.5:ENST00000667857.1:ENST00000474203.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	88	2	1.60343	1.779755	1.95608	0.0669889	0.00845157	0.183051	0.0828457
chr3	48925386	48925471	1421517	0	+	0.411765	(0.408,0.44]	chr3	149473	3	SS5_PROX	SS5_PROX:INTRON	ARIH2	ENSG00000177479.20	ENST00000478224.5:ENST00000430423.5:ENST00000452882.5:ENST00000498314.5:ENST00000474618.5:ENST00000449376.5:ENST00000490095.5:ENST00000356401.9:ENST00000495761.5:ENST00000483333.5:ENST00000482427.5:ENST00000488963.5:ENST00000420814.5:ENST00000486316.5:ENST00000449729.5:ENST00000433170.5:ENST00000474936.6:ENST00000466850.1:ENST00000484999.5:ENST00000470296.5:ENST00000463204.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	22	179	2	1.0382	1.7796500000000002	2.5211	0.0630717	1.06219e-4	0.176946	0.0087356
chr16	75013268	75013368	6389561	0	+	0.42	(0.408,0.44]	chr16	614482	105	INTRON	INTRON	ZNRF1	ENSG00000186187.12	ENST00000335325.9:ENST00000320619.10:ENST00000567962.5:ENST00000566250.5:ENST00000564320.1:ENST00000568511.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	103	2	1.66532	1.77951	1.8937	0.0147313	0.00928733	0.0983813	0.0855292
chr9	130802253	130802353	4214747	0	+	0.49	(0.476,0.515]	chr9	386427	874	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000393293.4	protein_coding	protein_coding	protein_coding	protein_coding	16	134	2	1.51299	1.779445	2.0459	0.0156736	0.00285079	0.109464	0.0474835
chr17	62482405	62482505	6652914	0	+	0.47	(0.44,0.476]	chr17	649301	8	INTRON	INTRON	TLK2	ENSG00000146872.19	ENST00000582809.5:ENST00000684213.1:ENST00000583843.5:ENST00000579450.5:ENST00000577616.1:ENST00000582195.6:ENST00000682085.1:ENST00000580705.5:ENST00000346027.10:ENST00000326270.13:ENST00000682203.1:ENST00000343388.11:ENST00000683536.1:ENST00000684440.1:ENST00000684772.1:ENST00000682274.1:ENST00000682827.1:ENST00000583690.6:ENST00000682075.1:ENST00000683104.1:ENST00000684012.1:ENST00000581041.5:ENST00000684553.1:ENST00000683737.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	69	2	1.47433	1.77943	2.08453	0.0595438	0.00689	0.16883600000000001	0.0750118
chr11	34095027	34095126	4768101	0	+	0.454545	(0.44,0.476]	chr11	441022	26	INTRON	INTRON	CAPRIN1	ENSG00000135387.21	ENST00000341394.9:ENST00000528856.5:ENST00000389645.7:ENST00000532820.5:ENST00000530820.5:ENST00000529307.1:ENST00000533657.5:ENST00000528948.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	67	2	1.44993	1.7794249999999998	2.10892	0.045367	0.0132897	0.164236	0.0944742
chr2	26061874	26061974	713377	0	+	0.43	(0.408,0.44]	chr2	82440	192	INTRON	INTRON	RAB10	ENSG00000084733.11	ENST00000264710.5:ENST00000495146.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	80	2	1.20932	1.77936	2.3494	0.0674635	0.00462504	0.183556	0.062717
chr2	53902059	53902156	1119854	0	-	0.28866000000000003	(0.28,0.32]	chr2	119958	1	INTRON	INTRON	PSME4	ENSG00000068878.15	ENST00000404125.6:ENST00000389993.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	17	168	2	1.33324	1.779345	2.22545	0.0255385	0.00404105	0.133676	0.0555558
chr3	9363254	9363349	1358629	0	+	0.589474	(0.57,1]	chr3	142589	4	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	THUMPD3	ENSG00000134077.16	ENST00000417036.1:ENST00000419437.5:ENST00000345094.7:ENST00000452837.7:ENST00000515662.6	protein_coding	protein_coding	protein_coding	protein_coding	5	23	2	1.63919	1.77928	1.91937	0.05421	0.0468438	0.167716	0.164887
chr4	767077	767177	1908415	0	+	0.61	(0.57,1]	chr4	191271	11	UTR3	UTR3:EXON_MRNA	PCGF3	ENSG00000185619.18	ENST00000362003.9:ENST00000440452.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	23	2	1.63919	1.77928	1.91937	0.05421	0.0468438	0.167716	0.164887
chr17	47148832	47148931	6788972	0	-	0.454545	(0.44,0.476]	chr17	669573	45	INTRON	INTRON	CDC27	ENSG00000004897.12	ENST00000066544.8:ENST00000531206.5:ENST00000533415.5:ENST00000527547.5:ENST00000526866.5:ENST00000525495.6:ENST00000574304.5:ENST00000575830.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	14	113	2	1.47495	1.779255	2.08356	0.0181844	0.00502853	0.115087	0.0619934
chr7	127660448	127660548	3402474	0	+	0.35	(0.32,0.35]	chr7	318063	76	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000463020.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	59	2	1.72405	1.779105	1.83416	0.0631198	0.0275418	0.176946	0.137011
chr5	31498765	31498865	2596669	0	-	0.47	(0.44,0.476]	chr5	246662	30	INTRON	INTRON	DROSHA	ENSG00000113360.17	ENST00000344624.8:ENST00000511367.6:ENST00000513349.5:ENST00000512076.1	protein_coding	protein_coding	protein_coding	protein_coding	11	91	2	1.32393	1.77909	2.23425	0.0439888	0.00441123	0.162255	0.0587529
chr8	129524074	129524174	4060523	0	-	0.46	(0.44,0.476]	chr8	369648	135	INTRON	INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1:ENST00000676273.1:ENST00000667643.1:ENST00000668791.1:ENST00000663716.1:ENST00000663572.1:ENST00000676148.1:ENST00000667962.1:ENST00000674877.1:ENST00000675316.1:ENST00000674656.1:ENST00000446592.7:ENST00000667341.1:ENST00000675186.1:ENST00000652971.1:ENST00000661447.1:ENST00000674863.1:ENST00000675498.1:ENST00000675527.1:ENST00000676108.1:ENST00000657647.1:ENST00000675589.1:ENST00000675913.1:ENST00000675109.1:ENST00000671632.1:ENST00000671311.1:ENST00000676099.1:ENST00000660652.1:ENST00000675522.1:ENST00000675183.1:ENST00000658861.1:ENST00000663991.1:ENST00000675044.1:ENST00000675435.1:ENST00000674639.1:ENST00000676069.1:ENST00000675532.1:ENST00000674762.1:ENST00000523151.6:ENST00000675948.1:ENST00000665364.1:ENST00000657251.1:ENST00000675166.1:ENST00000674883.1:ENST00000675867.1:ENST00000674580.1:ENST00000675393.1:ENST00000520048.1:ENST00000674906.1:ENST00000676030.1:ENST00000670588.1:ENST00000675072.1:ENST00000664936.1:ENST00000652914.1:ENST00000657069.1	lncRNA	lncRNA	lncRNA	lncRNA	7	60	2	1.42812	1.77902	2.12992	0.0673866	0.010975	0.183355	0.092635
chr2	235583124	235583224	1042228	0	+	0.43	(0.408,0.44]	chr2	111222	582	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1:ENST00000402604.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	84	2	1.64527	1.77898	1.91269	0.0175998	0.0153219	0.11319	0.100173
chr9	123237765	123237865	4340173	0	-	0.4	(0.378,0.408]	chr9	398963	4	INTRON	INTRON	STRBP	ENSG00000165209.19	ENST00000348403.10:ENST00000360998.3:ENST00000407982.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	98	2	1.48285	1.77896	2.07507	0.044825	0.00284959	0.149888	0.0494641
chr8	129486828	129486927	4060144	0	-	0.434343	(0.408,0.44]	chr8	369612	23	INTRON	INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1:ENST00000676273.1:ENST00000667643.1:ENST00000668791.1:ENST00000663716.1:ENST00000663572.1:ENST00000676148.1:ENST00000667962.1:ENST00000674877.1:ENST00000675316.1:ENST00000674656.1:ENST00000446592.7:ENST00000667341.1:ENST00000675186.1:ENST00000652971.1:ENST00000661447.1:ENST00000674863.1:ENST00000675498.1:ENST00000675527.1:ENST00000676108.1:ENST00000657647.1:ENST00000675589.1:ENST00000675913.1:ENST00000675109.1:ENST00000671632.1:ENST00000671311.1:ENST00000676099.1:ENST00000660652.1:ENST00000675522.1:ENST00000675183.1:ENST00000658861.1:ENST00000663991.1:ENST00000675044.1:ENST00000675435.1:ENST00000674639.1:ENST00000676069.1:ENST00000675532.1:ENST00000674762.1:ENST00000523151.6:ENST00000675948.1:ENST00000665364.1:ENST00000657251.1:ENST00000675166.1:ENST00000674883.1:ENST00000675867.1:ENST00000674580.1:ENST00000675393.1:ENST00000520048.1:ENST00000674906.1:ENST00000676030.1:ENST00000670588.1:ENST00000675072.1:ENST00000664936.1:ENST00000652914.1:ENST00000657069.1	lncRNA	lncRNA	lncRNA	lncRNA	10	79	2	1.39837	1.778875	2.15938	0.0342165	0.011260300000000001	0.146942	0.0884004
chr1	150575470	150575569	551044	0	-	0.393939	(0.378,0.408]	chr1	64761	14	UTR3	UTR3:EXON_MRNA:INTRON	MCL1	ENSG00000143384.14	ENST00000678770.1:ENST00000678610.1:ENST00000464132.2:ENST00000620947.4:ENST00000369026.3:ENST00000676522.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	27	233	2	1.67058	1.7788249999999999	1.88707	0.0035287	0.00253617	0.0546236	0.0448135
chr20	47356279	47356379	7349515	0	-	0.42	(0.408,0.44]	chr20	749372	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000458360.6:ENST00000262975.8:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000435836.5	protein_coding	protein_coding	protein_coding	protein_coding	16	134	2	1.7106	1.778785	1.84697	0.0123768	0.00346972	0.0916406	0.0539943
chr4	126689866	126689966	2237608	0	-	0.44	(0.408,0.44]	chr4	219023	2244	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	7	61	2	1.58763	1.77868	1.96973	0.0639217	0.0108773	0.177824	0.0923273
chr1	21680407	21680507	395801	0	-	0.36	(0.35,0.378]	chr1	47195	2	SS5_PROX	SS5_PROX:INTRON	USP48	ENSG00000090686.16	ENST00000400301.5:ENST00000308271.14:ENST00000374732.7:ENST00000479177.1:ENST00000529637.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	80	2	1.38867	1.778635	2.1686	0.0441117	0.0116706	0.162255	0.0891208
chr1	46362721	46362818	96902	0	+	0.484536	(0.476,0.515]	chr1	13026	10	UTR3	UTR3:EXON_MRNA	NSUN4	ENSG00000117481.11	ENST00000307089.7:ENST00000474844.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	76	2	1.486	1.7785799999999998	2.07116	0.0430512	0.00731321	0.148082	0.076234
chr1	167960242	167960341	248725	0	+	0.30303	(0.28,0.32]	chr1	29542	80	INTRON	INTRON	DCAF6	ENSG00000143164.16	ENST00000450548.5:ENST00000470919.5:ENST00000432587.6:ENST00000367843.7:ENST00000470721.5:ENST00000367840.4:ENST00000312263.10:ENST00000455334.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	10	101	2	1.46548	1.778465	2.09145	0.0299501	0.0172565	0.142135	0.104099
chr10	927130	927230	4542542	0	-	0.39	(0.378,0.408]	chr10	419310	23	INTRON	INTRON	LARP4B	ENSG00000107929.16	ENST00000316157.8:ENST00000690516.1:ENST00000476529.5:ENST00000406525.6:ENST00000481118.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	72	2	1.75204	1.778435	1.80483	0.0268575	0.0201276	0.123442	0.121243
chr3	47747091	47747190	1684728	0	-	0.464646	(0.44,0.476]	chr3	172116	7	INTRON	INTRON	SMARCC1	ENSG00000173473.11	ENST00000254480.10:ENST00000425518.5:ENST00000454240.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	50	2	1.65297	1.778435	1.9039	0.0501498	0.0331814	0.156383	0.145918
chr4	1962644	1962743	1911520	0	+	0.383838	(0.378,0.408]	chr4	191852	11	INTRON	INTRON	NSD2	ENSG00000109685.19	ENST00000508803.6:ENST00000382891.9:ENST00000353275.9:ENST00000382892.6:ENST00000382895.7:ENST00000312087.10:ENST00000677559.1:ENST00000482415.6:ENST00000382888.3:ENST00000679039.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	72	2	1.75204	1.778435	1.80483	0.0268575	0.0201276	0.123442	0.121243
chr20	47216095	47216194	7348085	0	-	0.454545	(0.44,0.476]	chr20	749229	30	INTRON	INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000467200.6:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4	protein_coding	protein_coding	protein_coding	protein_coding	15	128	2	1.55725	1.7784300000000002	1.99961	0.0155922	0.0036117	0.109452	0.0533855
chr4	55422420	55422519	1960864	0	+	0.474747	(0.44,0.476]	chr4	196577	39	INTRON	INTRON	TMEM165	ENSG00000134851.13	ENST00000381334.10:ENST00000506198.5:ENST00000508404.5:ENST00000514904.5:ENST00000508561.5:ENST00000608091.1:ENST00000509575.1:ENST00000506103.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	60	2	1.65297	1.77839	1.90381	0.0331814	0.0260626	0.145918	0.122153
chr1	109374885	109374985	520789	0	-	0.45	(0.44,0.476]	chr1	61195	49	INTRON	INTRON	SORT1	ENSG00000134243.12	ENST00000538502.5:ENST00000256637.8:ENST00000493736.5:ENST00000482236.5:ENST00000633956.1:ENST00000471996.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	68	2	1.66462	1.7783099999999998	1.892	0.0520247	0.00935701	0.159508	0.0858596
chr7	121170235	121170335	3395471	0	+	0.44	(0.408,0.44]	chr7	317781	202	INTRON	INTRON	CPED1	ENSG00000106034.18	ENST00000310396.10:ENST00000450913.6:ENST00000423795.5:ENST00000466055.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	94	2	1.32496	1.778285	2.23161	0.0566224	0.00206564	0.167389	0.04217
chr1	31065015	31065115	412893	0	-	0.5	(0.476,0.515]	chr1	49752	32	INTRON	INTRON	PUM1	ENSG00000134644.16	ENST00000426105.7:ENST00000373747.7:ENST00000257075.9:ENST00000424085.6:ENST00000525843.5:ENST00000440538.6:ENST00000373741.8:ENST00000373742.6:ENST00000526215.5:ENST00000525948.5:ENST00000480602.1:ENST00000524516.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	44	2	1.63838	1.7782749999999998	1.91817	0.0555021	0.0459211	0.165463	0.164984
chr17	59654272	59654370	6641914	0	+	0.479592	(0.476,0.515]	chr17	648550	26	INTRON	INTRON	CLTC	ENSG00000141367.12	ENST00000621829.4:ENST00000393043.5:ENST00000269122.8:ENST00000579456.5:ENST00000472129.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	44	2	1.63838	1.7782749999999998	1.91817	0.0555021	0.0459211	0.165463	0.164984
chr7	12387231	12387328	3485270	0	-	0.28866000000000003	(0.28,0.32]	chr7	325953	33	INTRON	INTRON	VWDE	ENSG00000146530.15	ENST00000275358.8:ENST00000452576.6:ENST00000521169.5:ENST00000326715.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	108	2	1.53798	1.7782550000000001	2.01853	0.0287839	0.0131536	0.140044	0.0938857
chr3	37278184	37278283	1396105	0	+	0.393939	(0.378,0.408]	chr3	146333	17	INTRON	INTRON	GOLGA4	ENSG00000144674.17	ENST00000435830.6:ENST00000444882.5:ENST00000356847.8:ENST00000450863.6:ENST00000361924.7:ENST00000429018.5:ENST00000431105.1:ENST00000419177.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	17	128	2	1.35213	1.778225	2.20432	0.0187739	0.00529064	0.117676	0.0636343
chr7	135675926	135676024	3429416	0	+	0.510204	(0.476,0.515]	chr7	319876	19	UTR3	UTR3:EXON_MRNA:INTRON	STMP1	ENSG00000243317.8	ENST00000509448.5:ENST00000507606.3:ENST00000422968.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	77	2	1.52755	1.7782200000000001	2.02889	0.0355377	0.00978617	0.151404	0.0835427
chr4	75667193	75667292	2162050	0	-	0.555556	(0.515,0.57]	chr4	213024	40	INTRON	INTRON	G3BP2	ENSG00000138757.15	ENST00000676666.1:ENST00000678062.1:ENST00000678100.1:ENST00000678122.1:ENST00000677265.1:ENST00000678971.1:ENST00000679281.1:ENST00000677333.1:ENST00000676470.1:ENST00000677620.1:ENST00000677606.1:ENST00000678798.1:ENST00000677583.1:ENST00000678447.1:ENST00000678875.1:ENST00000678244.1:ENST00000676974.1:ENST00000677003.1:ENST00000677889.1:ENST00000678329.1:ENST00000676584.1:ENST00000678552.1:ENST00000677192.1:ENST00000677727.1:ENST00000678265.1:ENST00000676839.1:ENST00000677876.1:ENST00000678123.1:ENST00000678578.1:ENST00000677171.1:ENST00000395719.7:ENST00000359707.9:ENST00000677060.1:ENST00000679294.1:ENST00000677201.1:ENST00000677952.1:ENST00000677125.1:ENST00000678273.1:ENST00000357854.7:ENST00000677162.1:ENST00000677566.1:ENST00000677970.1:ENST00000503660.5:ENST00000678670.1:ENST00000502654.5:ENST00000507745.5:ENST00000513927.1:ENST00000511146.5:ENST00000507252.5:ENST00000507701.1:ENST00000499709.3:ENST00000511868.6:ENST00000508510.6:ENST00000676702.1:ENST00000677145.1:ENST00000509561.6:ENST00000677489.1:ENST00000678389.1:ENST00000676485.1:ENST00000678908.1:ENST00000678843.1:ENST00000676641.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	58	2	1.69407	1.778125	1.86218	0.0459452	0.0100169	0.149888	0.0880217
chr1	32856820	32856918	66971	0	+	0.418367	(0.408,0.44]	chr1	8593	9	UTR3	UTR3:EXON_MRNA	S100PBP	ENSG00000116497.18	ENST00000373476.5:ENST00000373475.10	protein_coding	protein_coding	protein_coding	protein_coding	18	151	2	1.56609	1.7781099999999999	1.99013	0.0130034	0.00217704	0.093385	0.0435144
chr1	207780535	207780634	305196	0	+	0.343434	(0.32,0.35]	chr1	35129	44	INTRON	INTRON	CD46	ENSG00000117335.21	ENST00000695779.1:ENST00000695777.1:ENST00000695778.1:ENST00000496723.2:ENST00000695782.1:ENST00000695781.1:ENST00000695780.1:ENST00000636114.2:ENST00000367042.6:ENST00000322875.8:ENST00000322918.9:ENST00000354848.5:ENST00000357714.5:ENST00000358170.6:ENST00000367041.5:ENST00000367047.5:ENST00000695783.1:ENST00000695784.1:ENST00000469535.5:ENST00000360212.6:ENST00000480003.5:ENST00000695786.1:ENST00000490278.2:ENST00000488596.5:ENST00000471987.1:ENST00000462968.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	62	2	1.77409	1.77805	1.78201	0.0414296	0.0365003	0.153759	0.146067
chr18	12970354	12970453	6876384	0	+	0.434343	(0.408,0.44]	chr18	681295	55	INTRON	INTRON	SEH1L	ENSG00000085415.16	ENST00000262124.15:ENST00000399892.7:ENST00000585730.5:ENST00000589446.5:ENST00000587761.1:ENST00000588251.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	101	2	1.70477	1.778	1.85123	0.0215835	0.00562669	0.114814	0.0678837
chr1	33012891	33012987	416607	0	-	0.375	(0.35,0.378]	chr1	50320	9	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	AK2	ENSG00000004455.18	ENST00000373449.7:ENST00000672715.1:ENST00000695598.1:ENST00000550338.6:ENST00000695599.1:ENST00000354858.11:ENST00000695600.1:ENST00000695601.1:ENST00000491241.2:ENST00000695602.1:ENST00000469238.2:ENST00000695603.1:ENST00000695604.1:ENST00000672308.1:ENST00000548033.5:ENST00000467905.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	25	224	2	0.975421	1.7779905	2.58056	0.0625471	1.81381e-4	0.195633	0.0122264
chr1	35891859	35891957	70726	0	+	0.44898	(0.44,0.476]	chr1	9035	29	INTRON	INTRON	AGO1	ENSG00000092847.13	ENST00000373206.5:ENST00000373204.6:ENST00000674426.1:ENST00000674304.1	protein_coding	protein_coding	protein_coding	protein_coding	19	158	2	1.72149	1.77798	1.83447	0.00781871	0.00300648	0.0759358	0.0506263
chr7	155647414	155647514	3451922	0	+	0.41	(0.408,0.44]	chr7	322642	21	INTRON	INTRON	RBM33	ENSG00000184863.11	ENST00000287912.7:ENST00000401878.8:ENST00000392759.7	protein_coding	protein_coding	protein_coding	protein_coding	12	102	2	1.59462	1.7779699999999998	1.96132	0.0191739	0.00701866	0.108861	0.0754576
chr2	202298974	202299069	985263	0	+	0.536842	(0.515,0.57]	chr2	105780	7	INTRON	INTRON	NOP58	ENSG00000055044.11	ENST00000264279.10	protein_coding	protein_coding	protein_coding	protein_coding	9	62	2	1.48827	1.777925	2.06758	0.0301583	0.0140038	0.142572	0.0959618
chr15	30654790	30654889	5992566	0	+	0.333333	(0.32,0.35]	chr15	569759	54	INTRON	INTRON	ENSG00000284906:ENSG00000285035	ENSG00000284906.3:ENSG00000285035.2	ENST00000685924.1:ENST00000563110.6:ENST00000642399.2:ENST00000566548.5	protein_coding	protein_coding	protein_coding:transcribed_unprocessed_pseudogene	protein_coding:nonsense_mediated_decay:processed_transcript:transcribed_unprocessed_pseudogene	13	131	2	1.58894	1.777865	1.96679	0.0183147	0.00700351	0.115801	0.0718189
chr21	46198062	46198161	7470555	0	-	0.474747	(0.44,0.476]	chr21	761464	14	INTRON	INTRON	LSS	ENSG00000160285.15	ENST00000356396.8:ENST00000397728.8:ENST00000457828.6:ENST00000522411.5	protein_coding	protein_coding	protein_coding	protein_coding	16	134	2	1.63041	1.77782	1.92523	0.0114248	0.00400446	0.0886611	0.057767
chr9	130734354	130734454	4214068	0	+	0.5	(0.476,0.515]	chr9	386427	195	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000393293.4	protein_coding	protein_coding	protein_coding	protein_coding	8	62	2	1.23561	1.7778100000000001	2.32001	0.0722004	0.0136217	0.187533	0.101682
chr20	3220860	3220956	7224403	0	+	0.354167	(0.35,0.378]	chr20	734125	19	INTRON	INTRON	ITPA	ENSG00000125877.13	ENST00000483354.5:ENST00000490838.6:ENST00000380113.8:ENST00000460550.5:ENST00000455664.6:ENST00000399838.3:ENST00000461029.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	48	2	1.5118	1.77769	2.04358	0.0789277	0.0329533	0.198963	0.145171
chr3	156549801	156549901	1844459	0	-	0.33	(0.32,0.35]	chr3	185589	4	INTRON	INTRON	SSR3	ENSG00000114850.7	ENST00000265044.7:ENST00000467789.5:ENST00000476217.5:ENST00000478842.5:ENST00000463503.5:ENST00000496050.1:ENST00000467733.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	67	2	1.72098	1.7775699999999999	1.83416	0.0631198	0.0192903	0.176946	0.119831
chr8	129568923	129569023	4060976	0	-	0.34	(0.32,0.35]	chr8	369672	118	INTRON	INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1:ENST00000676273.1:ENST00000667643.1:ENST00000668791.1:ENST00000663716.1:ENST00000663572.1:ENST00000676148.1:ENST00000667962.1:ENST00000674877.1:ENST00000675316.1:ENST00000674656.1:ENST00000446592.7:ENST00000667341.1:ENST00000675186.1:ENST00000652971.1:ENST00000661447.1:ENST00000674863.1:ENST00000675498.1:ENST00000675527.1:ENST00000676108.1:ENST00000657647.1:ENST00000675589.1:ENST00000675913.1:ENST00000675109.1:ENST00000671632.1:ENST00000671311.1:ENST00000676099.1:ENST00000660652.1:ENST00000675522.1:ENST00000675044.1:ENST00000675435.1:ENST00000674639.1:ENST00000676069.1:ENST00000675532.1:ENST00000674762.1:ENST00000523151.6:ENST00000675948.1:ENST00000665364.1:ENST00000657251.1:ENST00000675166.1:ENST00000674883.1:ENST00000675867.1:ENST00000674580.1:ENST00000675393.1:ENST00000520048.1:ENST00000674906.1:ENST00000676030.1:ENST00000670588.1:ENST00000675072.1:ENST00000664936.1:ENST00000652914.1:ENST00000657069.1:ENST00000674882.1	lncRNA	lncRNA	lncRNA	lncRNA	13	126	2	1.75881	1.7775699999999999	1.79633	0.0177594	0.00743179	0.105629	0.0772645
chr18	799632	799732	6940580	0	-	0.42	(0.408,0.44]	chr18	686527	16	INTRON	INTRON	YES1	ENSG00000176105.14	ENST00000584307.5:ENST00000314574.5:ENST00000577611.1:ENST00000581960.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	62	2	1.73753	1.77756	1.81759	0.0316273	0.0275537	0.144405	0.123904
chr22	19092285	19092385	7551713	0	-	0.42	(0.408,0.44]	chr22	771903	24	INTRON	INTRON	DGCR2	ENSG00000070413.20	ENST00000537045.5:ENST00000545799.5:ENST00000263196.12:ENST00000389262.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	62	2	1.73753	1.77756	1.81759	0.0316273	0.0275537	0.144405	0.123904
chr3	6559036	6559135	1356832	0	+	0.313131	(0.28,0.32]	chr3	142512	3	INTRON	INTRON	ENSG00000189229	ENSG00000189229.12	ENST00000433639.1:ENST00000655754.1:ENST00000653839.1:ENST00000662846.1:ENST00000414438.2:ENST00000658468.1:ENST00000669512.1:ENST00000667028.1:ENST00000655541.1:ENST00000668643.1:ENST00000671568.1:ENST00000671036.1:ENST00000669798.1:ENST00000655753.1:ENST00000655856.1:ENST00000658398.1:ENST00000661518.1:ENST00000661279.1:ENST00000655495.1:ENST00000663041.1:ENST00000659827.1:ENST00000667716.1:ENST00000662508.1:ENST00000668416.1:ENST00000658133.1:ENST00000342990.4:ENST00000660054.1:ENST00000671370.1	lncRNA	lncRNA	lncRNA	lncRNA	13	141	2	1.77702	1.77756	1.7781	0.0157299	0.00932885	0.101453	0.0856412
chr19	2205638	2205736	6996597	0	+	0.459184	(0.44,0.476]	chr19	693473	25	INTRON	INTRON	DOT1L	ENSG00000104885.19	ENST00000398665.8:ENST00000686010.1	protein_coding	protein_coding	protein_coding	protein_coding	21	173	2	1.65139	1.7775249999999998	1.90366	0.00536786	0.00347576	0.0663666	0.0520789
chr12	123597606	123597704	5243140	0	+	0.418367	(0.408,0.44]	chr12	498286	10	UTR3	UTR3:EXON_MRNA	TMED2	ENSG00000086598.11	ENST00000262225.8	protein_coding	protein_coding	protein_coding	protein_coding	50	411	2	1.76359	1.777475	1.79136	0.00163178	8.25137e-4	0.0368771	0.0262788
chr2	48376134	48376233	777939	0	+	0.393939	(0.378,0.408]	chr2	87500	8	UTR3	UTR3:EXON_MRNA	FOXN2	ENSG00000170802.17	ENST00000340553.8	protein_coding	protein_coding	protein_coding	protein_coding	5	46	2	1.58349	1.77746	1.97143	0.0653091	0.0398704	0.180158	0.161534
chr8	22463754	22463854	3713546	0	+	0.38	(0.378,0.408]	chr8	344875	219	INTRON	INTRON	PPP3CC	ENSG00000120910.15	ENST00000518852.5:ENST00000240139.10:ENST00000289963.12:ENST00000397775.7:ENST00000522000.1	protein_coding	protein_coding	protein_coding	protein_coding	5	46	2	1.58349	1.77746	1.97143	0.0653091	0.0398704	0.180158	0.161534
chr3	47756164	47756263	1684819	0	-	0.333333	(0.32,0.35]	chr3	172116	98	INTRON	INTRON	SMARCC1	ENSG00000173473.11	ENST00000254480.10:ENST00000425518.5:ENST00000454240.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	80	2	1.56183	1.77745	1.99307	0.04271	0.0202633	0.148082	0.121406
chr17	32357303	32357403	6598052	0	+	0.23	[0,0.28]	chr17	641893	50	INTRON	INTRON	ZNF207	ENSG00000010244.19	ENST00000321233.10:ENST00000394673.6:ENST00000394670.9:ENST00000579634.5:ENST00000580759.5:ENST00000342555.10:ENST00000577908.5:ENST00000394679.9:ENST00000582165.1:ENST00000577324.1:ENST00000578918.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	97	2	1.34837	1.777395	2.20642	0.0470905	0.0280845	0.168569	0.125065
chr3	5180233	5180330	1354165	0	+	0.340206	(0.32,0.35]	chr3	142395	16	UTR3	UTR3:EXON_MRNA	ARL8B	ENSG00000134108.14	ENST00000256496.8	protein_coding	protein_coding	protein_coding	protein_coding	9	92	2	1.50258	1.777345	2.05211	0.0399817	0.0106769	0.161534	0.0861859
chr10	22595967	22596067	4579308	0	-	0.53	(0.515,0.57]	chr10	422005	38	INTRON	INTRON	PIP4K2A	ENSG00000150867.14	ENST00000376573.9:ENST00000545335.5:ENST00000422321.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	38	2	1.69407	1.77707	1.86007	0.0526611	0.0459452	0.178401	0.149888
chr4	144116056	144116155	2251822	0	-	0.242424	[0,0.28]	chr4	220013	9	INTRON	INTRON	GYPA	ENSG00000170180.22	ENST00000641688.3:ENST00000616983.4:ENST00000360771.8:ENST00000642295.1:ENST00000324022.14:ENST00000646447.1:ENST00000535709.6:ENST00000508337.1:ENST00000643254.1:ENST00000643148.1:ENST00000642738.1:ENST00000642713.1:ENST00000512064.5:ENST00000512789.5:ENST00000504786.5:ENST00000503627.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	113	2	1.73951	1.7769499999999998	1.81439	0.0353767	0.0160379	0.137535	0.109464
chr5	65934499	65934599	2370923	0	+	0.28	[0,0.28]	chr5	228472	73	INTRON	INTRON	ERBIN	ENSG00000112851.15	ENST00000380943.6:ENST00000507490.1:ENST00000416865.6:ENST00000380935.5:ENST00000284037.10:ENST00000380938.6:ENST00000511297.5:ENST00000506030.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	113	2	1.73951	1.7769499999999998	1.81439	0.0353767	0.0160379	0.137535	0.109464
chr3	5166309	5166409	1354016	0	+	0.49	(0.476,0.515]	chr3	142361	374	INTRON	INTRON	ARL8B	ENSG00000134108.14	ENST00000429403.5:ENST00000256496.8:ENST00000455168.5:ENST00000444332.1:ENST00000419534.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	110	2	1.55865	1.7769300000000001	1.99521	0.034348	0.00214597	0.135807	0.0430581
chr18	26060937	26061037	6959426	0	-	0.28	[0,0.28]	chr18	688450	28	INTRON	INTRON	SS18	ENSG00000141380.14	ENST00000415083.7:ENST00000542420.6:ENST00000579640.5:ENST00000269138.9:ENST00000269137.11:ENST00000585121.5:ENST00000539244.6:ENST00000585241.5:ENST00000578954.5:ENST00000579061.5:ENST00000577636.5:ENST00000584083.5:ENST00000578700.5:ENST00000582792.5:ENST00000581021.5:ENST00000577572.5:ENST00000582448.5:ENST00000581570.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	99	2	1.76483	1.7767849999999998	1.78874	0.0483	0.0175354	0.153327	0.11319
chr3	196065042	196065142	1897373	0	-	0.5	(0.476,0.515]	chr3	189936	2	SS5_PROX	SS5_PROX:INTRON	TFRC	ENSG00000072274.13	ENST00000420415.5:ENST00000360110.9:ENST00000392396.7:ENST00000464368.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	14	108	2	1.55642	1.776705	1.99699	0.0111434	0.0110277	0.0935786	0.0873897
chr16	18883112	18883203	6457665	0	-	0.384615	(0.378,0.408]	chr16	622839	4	INTRON	INTRON	SMG1	ENSG00000157106.18	ENST00000446231.7:ENST00000565324.5:ENST00000561947.5:ENST00000565224.5	protein_coding	protein_coding	protein_coding	protein_coding	6	52	2	1.66594	1.776615	1.88729	0.0532327	0.0320222	0.162538	0.144995
chr4	126697164	126697264	2237681	0	-	0.4	(0.378,0.408]	chr4	219023	2317	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	6	52	2	1.66594	1.776615	1.88729	0.0532327	0.0320222	0.162538	0.144995
chrX	44878886	44878986	7648659	0	+	0.48	(0.476,0.515]	chrX	782726	45	INTRON	INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000675440.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000621147.5:ENST00000475233.1:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	15	119	2	1.62183	1.776535	1.93124	0.00916342	0.00834939	0.0820636	0.0812949
chr17	20893328	20893427	6576314	0	+	0.363636	(0.35,0.378]	chr17	639384	5	INTRON	INTRON	CCDC144NL-AS1	ENSG00000233098.10	ENST00000577537.5:ENST00000692759.1:ENST00000443508.8:ENST00000692309.1:ENST00000439794.6:ENST00000417232.6:ENST00000583962.2:ENST00000582324.5:ENST00000577860.5	lncRNA	lncRNA	lncRNA	lncRNA	8	73	2	1.6756	1.77643	1.87726	0.0297629	0.0219737	0.12908	0.123836
chr3	196065900	196066000	1897382	0	-	0.56	(0.515,0.57]	chr3	189940	3	SS3_PROX	SS3_PROX:INTRON	TFRC	ENSG00000072274.13	ENST00000420415.5:ENST00000360110.9:ENST00000392396.7	protein_coding	protein_coding	protein_coding	protein_coding	50	340	2	1.74274	1.776415	1.81009	0.00224624	3.55603e-4	0.042469	0.0168968
chr19	28488857	28488957	7165983	0	-	0.4	(0.378,0.408]	chr19	724189	206	INTRON	INTRON	ENSG00000283403:ENSG00000267243	ENSG00000283403.1:ENSG00000267243.6	ENST00000592347.5:ENST00000593065.5	lncRNA	lncRNA	lncRNA	lncRNA	20	170	2	1.6655	1.7763	1.8871	0.00514296	0.00499613	0.065015	0.0617433
chr16	28964547	28964645	6334948	0	+	0.428571	(0.408,0.44]	chr16	606692	8	UTR3	UTR3:EXON_MRNA	NFATC2IP	ENSG00000176953.13	ENST00000564978.5:ENST00000320805.9	protein_coding	protein_coding	protein_coding	protein_coding	6	50	2	1.43792	1.776195	2.11447	0.062843	0.0285207	0.196433	0.12666
chr5	54302597	54302696	2620839	0	-	0.343434	(0.32,0.35]	chr5	248862	164	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2:ENST00000505630.5:ENST00000505383.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	79	2	1.73318	1.7760500000000001	1.81892	0.0462868	0.0134787	0.150684	0.101363
chr16	85625746	85625845	6416094	0	+	0.666667	(0.57,1]	chr16	615481	120	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1:ENST00000405402.6:ENST00000411612.5:ENST00000253458.12:ENST00000393243.5	protein_coding	protein_coding	protein_coding	protein_coding	6	26	2	1.52818	1.7760449999999999	2.02391	0.0508101	0.0339274	0.175989	0.134508
chr12	101714574	101714645	5203183	0	+	0.366197	(0.35,0.378]	chr12	492669	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CHPT1	ENSG00000111666.11	ENST00000550385.1:ENST00000229266.8:ENST00000549872.5:ENST00000552351.5:ENST00000549128.5:ENST00000552215.5:ENST00000552329.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	14	126	2	1.71907	1.776005	1.83294	0.0218101	0.00401531	0.11491	0.0578059
chr9	133374338	133374438	4370431	0	-	0.46	(0.44,0.476]	chr9	402198	64	INTRON	INTRON	SURF4	ENSG00000148248.14	ENST00000545297.5:ENST00000613129.4:ENST00000618229.4:ENST00000371989.8:ENST00000485435.6:ENST00000467910.5:ENST00000371991.3:ENST00000371982.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	51	2	1.47433	1.7759649999999998	2.0776	0.0595438	0.0292951	0.16883600000000001	0.141862
chr7	151491713	151491812	3674643	0	-	0.333333	(0.32,0.35]	chr7	341201	3	INTRON	INTRON	RHEB	ENSG00000106615.10	ENST00000262187.10:ENST00000472642.5:ENST00000478470.5:ENST00000496004.5:ENST00000470370.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	93	2	1.58894	1.77591	1.96288	0.0239991	0.0183147	0.119664	0.115801
chr5	138318623	138318718	2732070	0	-	0.547368	(0.515,0.57]	chr5	257318	12	INTRON	INTRON	CDC25C	ENSG00000158402.21	ENST00000323760.11:ENST00000415130.6:ENST00000648466.1:ENST00000513970.5:ENST00000514555.5:ENST00000503022.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	51	2	1.7407	1.77585	1.811	0.0325989	0.0242347	0.133687	0.130613
chr2	47884137	47884236	1115900	0	-	0.494949	(0.476,0.515]	chr2	119690	179	INTRON	INTRON	FBXO11	ENSG00000138081.22	ENST00000684712.1:ENST00000682451.1:ENST00000403359.8:ENST00000402508.5:ENST00000683894.1:ENST00000681999.1:ENST00000682975.1:ENST00000684085.1:ENST00000492225.5:ENST00000424163.2:ENST00000480038.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	52	2	1.58335	1.77584	1.96833	0.0640461	0.0195007	0.177882	0.119967
chr3	193622505	193622604	1592157	0	+	0.414141	(0.408,0.44]	chr3	164758	32	INTRON	INTRON	OPA1	ENSG00000198836.11	ENST00000361828.7:ENST00000361715.6:ENST00000361150.6:ENST00000361908.8:ENST00000361510.8:ENST00000642445.1:ENST00000646277.1:ENST00000644595.1:ENST00000643737.1:ENST00000644841.1:ENST00000392436.7:ENST00000646085.1:ENST00000643329.1:ENST00000646793.1:ENST00000392437.6:ENST00000645553.1:ENST00000642593.1:ENST00000644959.1:ENST00000642289.1:ENST00000646699.1:ENST00000644629.1:ENST00000434811.2:ENST00000497189.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	67	2	1.58622	1.7757800000000001	1.96534	0.0291748	0.0216499	0.141552	0.11491
chr5	181238743	181238824	2783861	0	-	0.493827	(0.476,0.515]	chr5	262917	2	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	RACK1	ENSG00000204628.12	ENST00000512805.6:ENST00000511473.5:ENST00000504325.5:ENST00000507756.5:ENST00000502905.5:ENST00000511566.5:ENST00000376817.8:ENST00000508682.5:ENST00000504128.5:ENST00000509535.5:ENST00000504726.1:ENST00000511900.5:ENST00000513060.5:ENST00000512968.5:ENST00000510199.5:ENST00000502844.5:ENST00000507000.5:ENST00000514183.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	32	263	2	1.64128	1.7757800000000001	1.91028	0.00366189	0.00143054	0.0535094	0.0347139
chr16	29525470	29525569	6470820	0	-	0.323232	(0.32,0.35]	chr16	625147	196	INTRON	INTRON	ENSG00000288632	ENSG00000288632.1	ENST00000675579.1	lncRNA	lncRNA	lncRNA	lncRNA	16	148	2	1.22668	1.775765	2.32485	0.0389728	0.00229938	0.160909	0.0428247
chr16	30287563	30287662	6472883	0	-	0.484848	(0.476,0.515]	chr16	625657	9	INTRON	INTRON	SMG1P5	ENSG00000183604.15	ENST00000529428.5:ENST00000411546.4:ENST00000691460.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	8	69	2	1.40757	1.7757299999999998	2.14389	0.0707852	0.00540862	0.184528	0.066545000000000007
chr8	37879813	37879912	3935748	0	-	0.434343	(0.408,0.44]	chr8	360576	18	INTRON	INTRON	RAB11FIP1	ENSG00000156675.16	ENST00000330843.9:ENST00000287263.8:ENST00000522727.5	protein_coding	protein_coding	protein_coding	protein_coding	7	61	2	1.62122	1.77562	1.93002	0.0394247	0.022095	0.143072	0.123903
chr8	129537051	129537151	4060653	0	-	0.37	(0.35,0.378]	chr8	369648	265	INTRON	INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1:ENST00000676273.1:ENST00000667643.1:ENST00000668791.1:ENST00000663716.1:ENST00000663572.1:ENST00000676148.1:ENST00000667962.1:ENST00000674877.1:ENST00000675316.1:ENST00000674656.1:ENST00000446592.7:ENST00000667341.1:ENST00000675186.1:ENST00000652971.1:ENST00000661447.1:ENST00000674863.1:ENST00000675498.1:ENST00000675527.1:ENST00000676108.1:ENST00000657647.1:ENST00000675589.1:ENST00000675913.1:ENST00000675109.1:ENST00000671632.1:ENST00000671311.1:ENST00000676099.1:ENST00000660652.1:ENST00000675522.1:ENST00000675183.1:ENST00000658861.1:ENST00000663991.1:ENST00000675044.1:ENST00000675435.1:ENST00000674639.1:ENST00000676069.1:ENST00000675532.1:ENST00000674762.1:ENST00000523151.6:ENST00000675948.1:ENST00000665364.1:ENST00000657251.1:ENST00000675166.1:ENST00000674883.1:ENST00000675867.1:ENST00000674580.1:ENST00000675393.1:ENST00000520048.1:ENST00000674906.1:ENST00000676030.1:ENST00000670588.1:ENST00000675072.1:ENST00000664936.1:ENST00000652914.1:ENST00000657069.1	lncRNA	lncRNA	lncRNA	lncRNA	12	98	2	1.41597	1.775605	2.13524	0.0237721	0.0130865	0.129075	0.0934394
chr16	15151349	15151449	6450969	0	-	0.47	(0.44,0.476]	chr16	621698	125	INTRON	INTRON	PKD1P6	ENSG00000250251.6	ENST00000343738.10	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	9	77	2	1.66633	1.7755800000000002	1.88483	0.0243614	0.0149825	0.12011	0.107704
chr1	77718841	77718941	493720	0	-	0.49	(0.476,0.515]	chr1	58380	2	SS3_PROX	SS3_PROX:INTRON	USP33	ENSG00000077254.14	ENST00000370794.7:ENST00000370793.5:ENST00000357428.5:ENST00000481579.5:ENST00000370792.7:ENST00000527390.1:ENST00000461986.5:ENST00000531637.5:ENST00000462192.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	88	2	1.16979	1.77554	2.38129	0.055057	0.00474233	0.183911	0.0600445
chr4	1835382	1835482	2095553	0	-	0.41	(0.408,0.44]	chr4	207313	4	SS3_PROX	SS3_PROX:INTRON	LETM1	ENSG00000168924.15	ENST00000302787.3:ENST00000505551.5:ENST00000466175.5:ENST00000512669.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	51	2	1.40374	1.77553	2.14732	0.0721345	0.0237354	0.187433	0.129075
chr7	5738086	5738185	3474528	0	-	0.212121	[0,0.28]	chr7	324877	46	INTRON	INTRON	RNF216	ENSG00000011275.19	ENST00000425013.6:ENST00000389902.8:ENST00000389900.8:ENST00000479541.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	77	2	1.55741	1.77543	1.99345	0.0792968	0.0211881	0.199711	0.123133
chr8	26297202	26297300	3716151	0	+	0.5	(0.476,0.515]	chr8	345364	30	INTRON	INTRON	PPP2R2A	ENSG00000221914.11	ENST00000380737.8:ENST00000520329.5:ENST00000518254.5:ENST00000524169.5:ENST00000518397.5:ENST00000522535.5:ENST00000665949.1:ENST00000522150.5:ENST00000523473.5:ENST00000521095.5:ENST00000660435.1:ENST00000523925.5:ENST00000524099.5:ENST00000315985.7:ENST00000519636.5:ENST00000522482.5:ENST00000521557.5:ENST00000519439.5:ENST00000521484.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	85	2	1.44826	1.77536	2.10246	0.0482164	0.00381269	0.153146	0.0562562
chr12	57058203	57058301	5336634	0	-	0.510204	(0.476,0.515]	chr12	510334	27	UTR3	UTR3:EXON_MRNA	NEMP1	ENSG00000166881.10	ENST00000300128.9:ENST00000379391.7	protein_coding	protein_coding	protein_coding	protein_coding	13	109	2	1.642	1.77511	1.90822	0.0138314	0.00708879	0.10247	0.0722268
chr11	65423571	65423671	4805778	0	+	0.52	(0.515,0.57]	chr11	446554	9	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NEAT1	ENSG00000245532.10	ENST00000499732.3:ENST00000687132.1:ENST00000501122.2:ENST00000685861.1:ENST00000601801.3:ENST00000612303.2:ENST00000670617.1:ENST00000646243.1:ENST00000645023.1:ENST00000642367.1	lncRNA	lncRNA	lncRNA	lncRNA	193	1266	2	1.56718	1.77494	1.9827	6.35344e-4	9.37748e-5	0.0228148	0.00860621
chr19	9562887	9562985	7132759	0	-	0.387755	(0.378,0.408]	chr19	718804	27	UTR3	UTR3:EXON_MRNA	ZNF121	ENSG00000197961.12	ENST00000320451.7:ENST00000586602.5	protein_coding	protein_coding	protein_coding	protein_coding	23	200	2	1.69561	1.77493	1.85425	0.00614703	0.00233098	0.0676501	0.0442989
chr7	30602080	30602176	3301506	0	+	0.479167	(0.476,0.515]	chr7	306537	10	EXON_MRNA	EXON_MRNA:INTRON	GARS1	ENSG00000106105.15	ENST00000675051.1:ENST00000470392.2:ENST00000674643.1:ENST00000675529.1:ENST00000674807.1:ENST00000675810.1:ENST00000676088.1:ENST00000674815.1:ENST00000676403.1:ENST00000485784.2:ENST00000676210.1:ENST00000478124.6:ENST00000454308.6:ENST00000389266.8:ENST00000675693.1:ENST00000676259.1:ENST00000675651.1:ENST00000674616.1:ENST00000674737.1:ENST00000675859.1:ENST00000676140.1:ENST00000674969.1:ENST00000676164.1:ENST00000675886.1:ENST00000444666.6:ENST00000675587.1:ENST00000674851.1:ENST00000675863.1:ENST00000675025.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	100	2	1.66385	1.774835	1.88582	0.0273268	0.00689769	0.123904	0.0750922
chr6	20404332	20404431	2827472	0	+	0.616162	(0.57,1]	chr6	265575	1	INTRON	INTRON	E2F3	ENSG00000112242.16	ENST00000346618.8:ENST00000535432.2	protein_coding	protein_coding	protein_coding	protein_coding	9	40	2	1.71424	1.774745	1.83525	0.0279017	0.0110377	0.137011	0.0873897
chr12	132795751	132795851	5449874	0	-	0.34	(0.32,0.35]	chr12	522046	1	SSB_ADJ	SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GOLGA3	ENSG00000090615.16	ENST00000204726.9:ENST00000450791.8:ENST00000693666.1:ENST00000688114.1:ENST00000687190.1:ENST00000690511.1:ENST00000685283.1:ENST00000691696.1:ENST00000691636.1:ENST00000690897.1:ENST00000690465.1:ENST00000456883.7:ENST00000692253.1:ENST00000687502.1:ENST00000688772.1:ENST00000687479.1:ENST00000690709.1:ENST00000545875.4:ENST00000688251.1:ENST00000690573.1:ENST00000685195.1:ENST00000686425.1:ENST00000693437.1:ENST00000692831.1:ENST00000688068.1:ENST00000692951.1:ENST00000689441.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	98	2	1.64769	1.77467	1.90165	0.0578603	0.00508454	0.167723	0.0646039
chr1	10279836	10279935	21363	0	+	0.484848	(0.476,0.515]	chr1	2124	3	INTRON	INTRON	KIF1B	ENSG00000054523.20	ENST00000676179.1:ENST00000377093.9:ENST00000696500.1:ENST00000263934.10:ENST00000696502.1:ENST00000696503.1:ENST00000696504.1:ENST00000377086.5:ENST00000377083.5:ENST00000377081.5:ENST00000620295.2:ENST00000622724.3:ENST00000495136.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	78	2	1.45223	1.7746	2.09697	0.0284116	0.0136924	0.138377	0.0949306
chr12	51056952	51057002	5140423	0	+	0.42	(0.408,0.44]	chr12	484799	1	SS5_PROX	SS5_PROX:INTRON	LETMD1	ENSG00000050426.16	ENST00000551477.5:ENST00000547318.5:ENST00000550929.5:ENST00000547029.5:ENST00000549340.5:ENST00000262055.9:ENST00000547555.5:ENST00000547660.5:ENST00000550814.5:ENST00000418425.6:ENST00000549686.5:ENST00000547008.5:ENST00000547877.5:ENST00000380135.7:ENST00000550100.5:ENST00000552739.5:ENST00000548516.5:ENST00000552645.5:ENST00000547256.1:ENST00000546814.1:ENST00000551931.5:ENST00000550274.1:ENST00000553043.1:ENST00000549395.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	60	2	1.54151	1.7745950000000001	2.00768	0.0368312	0.035843	0.152216	0.138959
chr7	50343731	50343831	3317095	0	+	0.42	(0.408,0.44]	chr7	308261	149	INTRON	INTRON	IKZF1	ENSG00000185811.20	ENST00000642219.1:ENST00000645066.1:ENST00000646110.1:ENST00000331340.8:ENST00000413698.5:ENST00000349824.8:ENST00000343574.9:ENST00000357364.8:ENST00000440768.6:ENST00000346667.8:ENST00000615491.4:ENST00000359197.9:ENST00000439701.2:ENST00000438033.5:ENST00000492782.6:ENST00000462201.1:ENST00000471793.1:ENST00000426121.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	60	2	1.54151	1.7745950000000001	2.00768	0.0368312	0.035843	0.152216	0.138959
chr11	86057667	86057767	5014729	0	-	0.33	(0.32,0.35]	chr11	473022	257	INTRON	INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000630913.2:ENST00000528398.5:ENST00000356360.9:ENST00000534412.5:ENST00000531558.1:ENST00000531930.5:ENST00000532041.5:ENST00000525162.5:ENST00000528256.1:ENST00000528411.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	12	114	2	1.7162	1.774575	1.83295	0.0224097	0.00891437	0.11692	0.0849778
chr22	19093982	19094081	7551730	0	-	0.333333	(0.32,0.35]	chr22	771903	41	INTRON	INTRON	DGCR2	ENSG00000070413.20	ENST00000537045.5:ENST00000545799.5:ENST00000263196.12:ENST00000389262.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	125	2	1.22414	1.774495	2.32485	0.0625148	0.00229938	0.195535	0.0428247
chr7	135579611	135579709	3428541	0	+	0.438776	(0.408,0.44]	chr7	319657	3	INTRON	INTRON	NUP205	ENSG00000155561.15	ENST00000285968.11	protein_coding	protein_coding	protein_coding	protein_coding	10	80	2	1.24052	1.77445	2.30838	0.0616102	0.00547703	0.173886	0.0671198
chr4	151103477	151103577	2065080	0	+	0.37	(0.35,0.378]	chr4	204390	5	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	RPS3A	ENSG00000145425.10	ENST00000509736.5:ENST00000274065.9:ENST00000507485.1:ENST00000514682.5:ENST00000515818.5:ENST00000512690.5:ENST00000512797.5:ENST00000507327.5:ENST00000515792.5:ENST00000506126.5:ENST00000510993.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	19	175	2	1.68567	1.7744	1.86313	0.0066179	0.00488583	0.0738715	0.0608364
chr2	108743251	108743350	847655	0	+	0.444444	(0.44,0.476]	chr2	94821	22	INTRON	INTRON	RANBP2	ENSG00000153201.16	ENST00000283195.11	protein_coding	protein_coding	protein_coding	protein_coding	15	125	2	1.69028	1.77439	1.8585	0.013201	0.00415914	0.0940535	0.0590902
chr7	127729798	127729898	3403188	0	+	0.42	(0.408,0.44]	chr7	318134	80	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000468166.5:ENST00000465900.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	71	2	1.60344	1.774375	1.94531	0.0387506	0.0136489	0.160156	0.0949306
chr3	197071696	197071796	1901206	0	-	0.37	(0.35,0.378]	chr3	190513	8	INTRON	INTRON	DLG1	ENSG00000075711.21	ENST00000667157.1:ENST00000346964.6:ENST00000656428.1:ENST00000663148.1:ENST00000655488.1:ENST00000357674.9:ENST00000671185.1:ENST00000658701.1:ENST00000667104.1:ENST00000661336.1:ENST00000669565.1:ENST00000670455.1:ENST00000656087.1:ENST00000670366.1:ENST00000653583.1:ENST00000653795.1:ENST00000671246.1:ENST00000661453.1:ENST00000665728.1:ENST00000664564.1:ENST00000653331.1:ENST00000660432.1:ENST00000660898.1:ENST00000657381.1:ENST00000659221.1:ENST00000654737.1:ENST00000669332.1:ENST00000659716.1:ENST00000660553.1:ENST00000664991.1:ENST00000419354.5:ENST00000661440.1:ENST00000667971.1:ENST00000670935.1:ENST00000668578.1:ENST00000666007.1:ENST00000661229.1:ENST00000660237.1:ENST00000657098.1:ENST00000661013.1:ENST00000436682.6:ENST00000452595.5:ENST00000662727.1:ENST00000422288.6:ENST00000448528.6:ENST00000443183.5:ENST00000656944.1:ENST00000392382.6:ENST00000450955.5:ENST00000658155.1:ENST00000669714.1:ENST00000654733.1:ENST00000475394.5:ENST00000469073.2:ENST00000419227.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	73	2	1.71241	1.77437	1.83633	0.0335602	0.019274	0.134145	0.119831
chr1	173867236	173867332	587085	0	-	0.635417	(0.57,1]	chr1	70638	3	EXON_LNCRNA	EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GAS5	ENSG00000234741.9	ENST00000687189.1:ENST00000689238.1:ENST00000687549.1:ENST00000687435.1:ENST00000687987.1:ENST00000686995.1:ENST00000689958.1:ENST00000687063.1:ENST00000689895.1:ENST00000690228.1:ENST00000688573.1:ENST00000412059.6:ENST00000685107.1:ENST00000449289.6:ENST00000691213.1:ENST00000436285.6:ENST00000436656.6:ENST00000422008.6:ENST00000691137.1:ENST00000450589.6:ENST00000448718.6:ENST00000693348.1:ENST00000690349.1:ENST00000690761.1:ENST00000687022.1:ENST00000686878.1:ENST00000430245.5:ENST00000422183.6:ENST00000442067.6:ENST00000693450.1:ENST00000690448.1:ENST00000416952.6:ENST00000688895.1:ENST00000687710.1:ENST00000693030.1:ENST00000692671.1:ENST00000688557.1:ENST00000456812.7:ENST00000431268.5:ENST00000455838.6:ENST00000449589.6:ENST00000444470.6:ENST00000693469.1:ENST00000685758.1:ENST00000458220.2:ENST00000687409.1:ENST00000688952.1:ENST00000689860.1:ENST00000686918.1:ENST00000691056.1:ENST00000689469.1:ENST00000685039.1:ENST00000414075.6:ENST00000692994.1:ENST00000691982.1:ENST00000690172.1:ENST00000686460.1:ENST00000691712.1:ENST00000685159.1:ENST00000685008.1:ENST00000452197.5:ENST00000454068.5:ENST00000650796.1:ENST00000451607.5:ENST00000693521.1:ENST00000690941.1:ENST00000693459.1:ENST00000686231.1:ENST00000684949.1:ENST00000425771.6:ENST00000432536.5:ENST00000456293.5:ENST00000443799.5:ENST00000421068.5	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	13	52	2	1.46899	1.7742749999999998	2.07956	0.014225	0.013114	0.0998629	0.0961169
chr1	155733426	155733525	229974	0	+	0.373737	(0.35,0.378]	chr1	27059	10	INTRON	INTRON	DAP3	ENSG00000132676.16	ENST00000471642.6:ENST00000343043.7:ENST00000368336.10:ENST00000535183.5:ENST00000421487.6:ENST00000477394.5:ENST00000475056.5:ENST00000490249.5:ENST00000463295.1	protein_coding	protein_coding	protein_coding	protein_coding	7	61	2	1.55918	1.774235	1.98929	0.0417909	0.0326427	0.147075	0.145164
chr11	78410452	78410552	5000314	0	-	0.4	(0.378,0.408]	chr11	472472	460	INTRON	INTRON	GAB2	ENSG00000033327.13	ENST00000361507.5:ENST00000526030.1:ENST00000528886.5:ENST00000530915.1:ENST00000534823.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	11	97	2	1.55037	1.77419	1.99801	0.0365151	0.00408225	0.138959	0.0581373
chr12	70252301	70252400	5166520	0	+	0.525253	(0.515,0.57]	chr12	489374	76	INTRON	INTRON	CNOT2	ENSG00000111596.14	ENST00000547780.5:ENST00000418359.7:ENST00000552319.5:ENST00000550160.5:ENST00000551661.5:ENST00000551132.5:ENST00000553078.5:ENST00000548021.5:ENST00000550641.6:ENST00000229195.8:ENST00000552915.5:ENST00000549443.5:ENST00000548741.5:ENST00000552483.5:ENST00000552422.5:ENST00000551179.1:ENST00000547321.5:ENST00000553020.5:ENST00000548159.5:ENST00000549750.5:ENST00000551043.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	37	2	1.67758	1.77414	1.8707	0.0523213	0.0471728	0.168737	0.160182
chr19	37236574	37236673	7060381	0	+	0.555556	(0.515,0.57]	chr19	704904	1	INTRON	INTRON	ZNF383	ENSG00000188283.12	ENST00000586068.5:ENST00000590503.5:ENST00000684119.1:ENST00000589413.5:ENST00000352998.7:ENST00000588371.1:ENST00000588250.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	37	2	1.67758	1.77414	1.8707	0.0523213	0.0471728	0.168737	0.160182
chr7	139370587	139370686	3437695	0	+	0.444444	(0.44,0.476]	chr7	320318	99	INTRON	INTRON	LUC7L2:FMC1-LUC7L2	ENSG00000146963.18:ENSG00000269955.2	ENST00000541170.7:ENST00000541515.3:ENST00000608368.5:ENST00000619796.4:ENST00000354926.9:ENST00000435096.1:ENST00000456182.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	15	123	2	1.73939	1.774015	1.80864	0.0107599	0.00580526	0.0867043	0.0686131
chr15	32620578	32620678	5995524	0	+	0.25	[0,0.28]	chr15	569961	4	SS5_PROX	SS5_PROX:INTRON	ARHGAP11A	ENSG00000198826.11	ENST00000565905.5:ENST00000361627.8:ENST00000567348.5:ENST00000563864.5:ENST00000543522.5	protein_coding	protein_coding	protein_coding	protein_coding	6	73	2	1.60593	1.7739850000000001	1.94204	0.0544139	0.0433625	0.164972	0.162255
chr17	46152105	46152204	6784458	0	-	0.373737	(0.35,0.378]	chr17	669220	35	INTRON	INTRON	KANSL1	ENSG00000120071.15	ENST00000574590.6:ENST00000572904.6:ENST00000432791.7:ENST00000575318.6:ENST00000638275.1:ENST00000262419.10:ENST00000648792.1:ENST00000639531.1:ENST00000639150.1:ENST00000639853.1:ENST00000571698.2:ENST00000639375.1:ENST00000638269.1:ENST00000576248.2:ENST00000639356.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	11	92	2	1.44681	1.7739500000000001	2.10109	0.0247768	0.014685	0.131872	0.0983813
chr20	63876175	63876275	7300797	0	+	0.52	(0.515,0.57]	chr20	743107	3	SS5_PROX	SS5_PROX:INTRON	TPD52L2	ENSG00000101150.18	ENST00000611972.4:ENST00000615907.4:ENST00000369927.8:ENST00000346249.9:ENST00000348257.9:ENST00000352482.8:ENST00000351424.8:ENST00000217121.9:ENST00000358548.4	protein_coding	protein_coding	protein_coding	protein_coding	7	51	2	1.75372	1.773785	1.79385	0.0386904	0.0201222	0.14279	0.121243
chr7	35904390	35904487	3306955	0	+	0.309278	(0.28,0.32]	chr7	307062	2	UTR3	UTR3:EXON_MRNA	SEPTIN7	ENSG00000122545.21	ENST00000399034.7:ENST00000435235.6:ENST00000350320.11:ENST00000399035.7:ENST00000425198.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	68	2	1.71442	1.773725	1.83303	0.0454351	0.0370023	0.164236	0.139194
chr18	793830	793929	6940521	0	-	0.343434	(0.32,0.35]	chr18	686525	55	INTRON	INTRON	YES1	ENSG00000176105.14	ENST00000584307.5:ENST00000314574.5:ENST00000577611.1:ENST00000581960.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	98	2	1.60034	1.7735150000000002	1.94669	0.0221816	0.0154073	0.124191	0.100659
chr17	51191084	51191184	6797159	0	-	0.3	(0.28,0.32]	chr17	671037	48	INTRON	INTRON	MBTD1	ENSG00000011258.16	ENST00000586178.6:ENST00000415868.5	protein_coding	protein_coding	protein_coding	protein_coding	5	57	2	1.64432	1.773475	1.90263	0.0606133	0.0503272	0.17488	0.171142
chr2	38748404	38748478	1099849	0	-	0.554054	(0.515,0.57]	chr2	117996	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SRSF7	ENSG00000115875.19	ENST00000446327.6:ENST00000313117.11:ENST00000425778.5:ENST00000425941.6:ENST00000452806.5:ENST00000409276.5:ENST00000432873.5:ENST00000431066.5:ENST00000443213.5:ENST00000487773.1:ENST00000415527.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	45	2	1.68687	1.77347	1.86007	0.0526611	0.0300837	0.178401	0.129186
chrX	24778252	24778352	7632560	0	+	0.57	(0.515,0.57]	chrX	781731	25	INTRON	INTRON	POLA1	ENSG00000101868.13	ENST00000672178.1:ENST00000379068.8:ENST00000379059.7:ENST00000611764.2:ENST00000480125.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	45	2	1.68687	1.77347	1.86007	0.0526611	0.0300837	0.178401	0.129186
chr3	183732833	183732933	1580645	0	+	0.48	(0.476,0.515]	chr3	163056	36	INTRON	INTRON	YEATS2	ENSG00000163872.16	ENST00000305135.10	protein_coding	protein_coding	protein_coding	protein_coding	7	56	2	1.28655	1.773445	2.26034	0.075974	0.0166235	0.194842	0.110511
chr22	16787501	16787601	7546274	0	-	0.37	(0.35,0.378]	chr22	771315	27	INTRON	INTRON	XKR3	ENSG00000172967.8	ENST00000331428.5:ENST00000684488.1	protein_coding	protein_coding	protein_coding	protein_coding	12	105	2	1.38988	1.7734200000000002	2.15696	0.0304557	0.00672191	0.143385	0.070858
chr19	19408018	19408118	7035369	0	+	0.53	(0.515,0.57]	chr19	701433	16	INTRON	INTRON	GATAD2A	ENSG00000167491.18	ENST00000494516.6:ENST00000360315.7:ENST00000609040.5:ENST00000417582.6:ENST00000683918.1:ENST00000448576.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	55	2	1.43349	1.77331	2.11313	0.0378274	0.0256725	0.141117	0.133676
chr17	30737187	30737286	6589858	0	+	0.515152	(0.476,0.515]	chr17	640852	17	INTRON	INTRON	SUZ12P1	ENSG00000264538.7	ENST00000578070.5:ENST00000579526.5:ENST00000690405.1:ENST00000497969.6:ENST00000578195.6:ENST00000582557.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	10	83	2	1.47534	1.77325	2.07116	0.0350582	0.00731321	0.137535	0.076234
chr1	110892774	110892855	183641	0	+	0.308642	(0.28,0.32]	chr1	20370	4	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	CD53	ENSG00000143119.14	ENST00000648608.1:ENST00000271324.6:ENST00000471220.5:ENST00000476408.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	77	2	1.64429	1.7731949999999999	1.9021	0.0365539	0.0304779	0.153932	0.130699
chr16	85560459	85560559	6415436	0	+	0.59	(0.57,1]	chr16	615470	37	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	17	71	2	1.46899	1.7731849999999998	2.07738	0.014225	0.00148198	0.0961169	0.0353943
chr1	226064069	226064163	327781	0	+	0.361702	(0.35,0.378]	chr1	37744	2	UTR5	UTR5:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	H3-3A	ENSG00000163041.13	ENST00000366816.5:ENST00000366814.3:ENST00000366815.10:ENST00000653960.1:ENST00000655399.1:ENST00000667897.1:ENST00000656829.1:ENST00000666609.1:ENST00000661429.1:ENST00000366813.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	24	208	2	1.68476	1.773075	1.86139	0.00597085	0.00318587	0.0674604	0.0520029
chr1	153880625	153880725	557342	0	-	0.44	(0.408,0.44]	chr1	65983	519	INTRON	INTRON	GATAD2B	ENSG00000143614.10	ENST00000368655.5:ENST00000634544.1:ENST00000634408.1:ENST00000634401.1:ENST00000634791.1:ENST00000636014.1:ENST00000637331.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	51	2	1.74775	1.772965	1.79818	0.0735403	0.020428	0.190238	0.122109
chr1	160314921	160315020	572028	0	-	0.424242	(0.408,0.44]	chr1	69341	4	INTRON	INTRON	COPA	ENSG00000122218.17	ENST00000241704.8:ENST00000696204.1:ENST00000696203.1:ENST00000696202.1:ENST00000649963.1:ENST00000696208.1:ENST00000696207.1:ENST00000696206.1:ENST00000649676.1:ENST00000368069.7:ENST00000647693.1:ENST00000649787.1:ENST00000650154.1:ENST00000647799.1:ENST00000648805.1:ENST00000647683.1:ENST00000649231.1:ENST00000648501.1:ENST00000696209.1:ENST00000696210.1:ENST00000696211.1:ENST00000647899.1:ENST00000696212.1:ENST00000696214.1:ENST00000696213.1:ENST00000696215.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	51	2	1.74775	1.772965	1.79818	0.0735403	0.020428	0.190238	0.122109
chr5	6731511	6731611	2316016	0	+	0.42	(0.408,0.44]	chr5	224267	160	INTRON	INTRON	TENT4A	ENSG00000112941.14	ENST00000230859.8:ENST00000515721.1:ENST00000631941.2	protein_coding	protein_coding	protein_coding	protein_coding	13	110	2	1.61858	1.772965	1.92735	0.0175559	0.00550465	0.105143	0.0672816
chr9	125364233	125364332	4199316	0	+	0.414141	(0.408,0.44]	chr9	383314	16	UTR3	UTR3:EXON_MRNA	GAPVD1	ENSG00000165219.23	ENST00000297933.11:ENST00000470056.5:ENST00000394104.6	protein_coding	protein_coding	protein_coding	protein_coding	10	84	2	1.5375	1.77296	2.00842	0.0261451	0.0108512	0.133676	0.0873034
chr17	59839911	59840008	6643734	0	+	0.443299	(0.44,0.476]	chr17	648787	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	VMP1	ENSG00000062716.13	ENST00000262291.9:ENST00000592619.5:ENST00000591877.1:ENST00000591782.1:ENST00000588617.1:ENST00000592790.1:ENST00000587470.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	16	124	2	1.39151	1.772885	2.15426	0.0193562	0.00372059	0.119831	0.0535094
chr4	174318758	174318857	2082944	0	+	0.292929	(0.28,0.32]	chr4	205864	15	UTR3	UTR3:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CEP44	ENSG00000164118.13	ENST00000457424.6:ENST00000396791.7:ENST00000503780.6:ENST00000426172.3:ENST00000296519.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	22	233	2	1.56042	1.772865	1.98531	0.00928868	0.00382827	0.0855292	0.0542786
chr1	52858546	52858645	105065	0	+	0.494949	(0.476,0.515]	chr1	13732	4	INTRON	INTRON	ZYG11A	ENSG00000203995.10	ENST00000371532.5:ENST00000612017.4:ENST00000371528.2	protein_coding	protein_coding	protein_coding	protein_coding	5	43	2	1.61586	1.77285	1.92984	0.0567093	0.0466474	0.185107	0.151522
chr7	127915192	127915292	3405049	0	+	0.49	(0.476,0.515]	chr7	318161	100	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000465900.5:ENST00000486037.1:ENST00000484767.5:ENST00000492840.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	43	2	1.61586	1.77285	1.92984	0.0567093	0.0466474	0.185107	0.151522
chr17	31879775	31879874	6752690	0	-	0.484848	(0.476,0.515]	chr17	663763	6	INTRON	INTRON	UTP6	ENSG00000108651.10	ENST00000261708.9:ENST00000477128.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	52	2	1.52615	1.77284	2.01953	0.0739267	0.0163662	0.190914	0.109586
chr17	57276057	57276155	6632944	0	+	0.397959	(0.378,0.408]	chr17	648005	17	INTRON	INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000581776.5:ENST00000674961.1:ENST00000582453.5:ENST00000675656.1:ENST00000322684.7:ENST00000579590.5:ENST00000676073.1:ENST00000675822.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	45	2	1.72045	1.772825	1.8252	0.0619563	0.0424671	0.174514	0.161763
chr8	63205393	63205492	3773361	0	+	0.383838	(0.378,0.408]	chr8	349948	165	INTRON	INTRON	YTHDF3	ENSG00000185728.17	ENST00000617200.1:ENST00000623280.3:ENST00000539294.6:ENST00000621957.4:ENST00000517371.5:ENST00000615676.1:ENST00000621413.4:ENST00000621890.4:ENST00000621820.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	45	2	1.72045	1.772825	1.8252	0.0619563	0.0424671	0.174514	0.161763
chrX	136863712	136863811	7897509	0	-	0.40404	(0.378,0.408]	chrX	804139	148	INTRON	INTRON	RBMX	ENSG00000147274.14	ENST00000561733.5	protein_coding	processed_transcript	protein_coding	processed_transcript	5	45	2	1.65821	1.7727499999999998	1.88729	0.0532327	0.0506302	0.17547	0.162538
chrX	151973599	151973693	7908630	0	-	0.43617	(0.408,0.44]	chrX	804816	11	INTRON	INTRON	GABRE	ENSG00000102287.19	ENST00000370328.4:ENST00000441219.5:ENST00000417300.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	24	198	2	1.48575	1.7726	2.05945	0.0119165	9.09614e-4	0.0899583	0.0277043
chr11	120356143	120356243	4876397	0	+	0.28	[0,0.28]	chr11	455798	185	INTRON	INTRON	ARHGEF12	ENSG00000196914.9	ENST00000397843.7:ENST00000356641.7	protein_coding	protein_coding	protein_coding	protein_coding	6	77	2	1.66484	1.772545	1.88025	0.0617844	0.029906	0.174281	0.142135
chr9	37590398	37590495	4251774	0	-	0.371134	(0.35,0.378]	chr9	391578	11	INTRON	INTRON	TOMM5	ENSG00000175768.13	ENST00000540941.1:ENST00000321301.7:ENST00000377773.9:ENST00000401811.3:ENST00000544379.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	57	2	1.56881	1.7721550000000001	1.9755	0.047622	0.0398617	0.161534	0.153019
chr10	68775488	68775588	4442834	0	+	0.43	(0.408,0.44]	chr10	409702	20	INTRON	INTRON	CCAR1	ENSG00000060339.14	ENST00000630771.2:ENST00000543719.5:ENST00000265872.11:ENST00000539539.5:ENST00000540210.5:ENST00000543706.1:ENST00000398676.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	93	2	1.70477	1.77204	1.83931	0.0215835	0.00806984	0.114814	0.0806514
chr21	46197962	46198062	7470554	0	-	0.3	(0.28,0.32]	chr21	761464	13	INTRON	INTRON	LSS	ENSG00000160285.15	ENST00000356396.8:ENST00000397728.8:ENST00000457828.6:ENST00000522411.5	protein_coding	protein_coding	protein_coding	protein_coding	15	144	2	1.18839	1.772025	2.35566	0.0464835	0.0038391	0.166828	0.0542786
chr10	101788517	101788616	4680660	0	-	0.494949	(0.476,0.515]	chr10	431944	6	INTRON	INTRON	OGA	ENSG00000198408.14	ENST00000439817.5:ENST00000361464.8:ENST00000357797.9:ENST00000482611.5:ENST00000494347.5:ENST00000479811.5:ENST00000461645.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	15	111	2	1.28253	1.77202	2.26151	0.0298044	0.0038595	0.142135	0.0542786
chr9	125237449	125237548	4352458	0	-	0.565657	(0.515,0.57]	chr9	399596	4	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	HSPA5	ENSG00000044574.9	ENST00000324460.7:ENST00000680257.1:ENST00000679355.1:ENST00000681045.1:ENST00000681424.1:ENST00000681675.1:ENST00000681544.1:ENST00000680272.1:ENST00000679475.1:ENST00000680494.1:ENST00000681774.1:ENST00000680640.1:ENST00000680032.1:ENST00000681540.1:ENST00000680234.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	62	2	1.2997	1.7720150000000001	2.24433	0.0561321	0.00725078	0.18407	0.072984
chr19	28440705	28440805	7165494	0	-	0.35	(0.32,0.35]	chr19	724159	26	INTRON	INTRON	ENSG00000283403:ENSG00000267243	ENSG00000283403.1:ENSG00000267243.6	ENST00000592347.5:ENST00000593065.5:ENST00000592716.1	lncRNA	lncRNA	lncRNA	lncRNA	6	60	2	1.46414	1.771995	2.07985	0.065059	0.0303092	0.179599	0.143025
chr5	79627480	79627580	2398882	0	+	0.45	(0.44,0.476]	chr5	231707	36	INTRON	INTRON	TENT2	ENSG00000164329.14	ENST00000423041.6:ENST00000504233.5:ENST00000453514.6:ENST00000428308.6:ENST00000296783.7	protein_coding	protein_coding	protein_coding	protein_coding	7	60	2	1.56252	1.77199	1.98146	0.0465207	0.0186013	0.151387	0.117264
chr1	55108027	55108124	464778	0	-	0.463918	(0.44,0.476]	chr1	56079	2	INTRON	INTRON	USP24	ENSG00000162402.14	ENST00000294383.7	protein_coding	protein_coding	protein_coding	protein_coding	7	55	2	1.35267	1.771725	2.19078	0.060678	0.0226089	0.192323	0.117489
chr16	85497490	85497590	6414805	0	+	0.45	(0.44,0.476]	chr16	615465	1382	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	9	78	2	1.44993	1.77163	2.09333	0.045367	0.00776307	0.164236	0.0757646
chr12	121802784	121802878	5439503	0	-	0.414894	(0.408,0.44]	chr12	520143	1	EXON_LNCRNA	EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RHOF:LINC01089	ENSG00000139725.8:ENSG00000212694.8	ENST00000541657.5:ENST00000545544.1:ENST00000429892.5:ENST00000542933.5:ENST00000428029.6:ENST00000541694.5:ENST00000535643.5:ENST00000536662.5:ENST00000545885.5:ENST00000538335.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA:processed_transcript	11	94	2	1.61024	1.7714949999999998	1.93275	0.0200746	0.00938746	0.121073	0.0817766
chr10	35357874	35357974	4424716	0	+	0.33	(0.32,0.35]	chr10	407899	203	INTRON	INTRON	CCNY	ENSG00000108100.18	ENST00000374706.5:ENST00000490012.6:ENST00000493157.6:ENST00000374704.8:ENST00000265375.13:ENST00000339497.7:ENST00000492478.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	78	2	1.61591	1.77148	1.92705	0.0277247	0.0267365	0.137011	0.123349
chr2	235566528	235566628	1042062	0	+	0.48	(0.476,0.515]	chr2	111222	416	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1:ENST00000402604.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	62	2	1.68092	1.7713700000000001	1.86182	0.0474026	0.0178986	0.169265	0.106365
chr1	26708028	26708128	51291	0	+	0.46	(0.44,0.476]	chr1	6542	101	INTRON	INTRON	ARID1A	ENSG00000117713.21	ENST00000430799.7:ENST00000324856.13:ENST00000637465.1:ENST00000457599.6	protein_coding	protein_coding	protein_coding	protein_coding	10	83	2	1.74385	1.77129	1.79873	0.0223888	0.0119796	0.116918	0.0962115
chr3	14407038	14407138	1369436	0	+	0.47	(0.44,0.476]	chr3	144308	38	INTRON	INTRON	SLC6A6	ENSG00000131389.18	ENST00000613060.4:ENST00000618278.4:ENST00000610642.4:ENST00000622810.4:ENST00000649500.1:ENST00000622186.5:ENST00000621751.4:ENST00000613930.4:ENST00000622176.4:ENST00000615188.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	83	2	1.74385	1.77129	1.79873	0.0223888	0.0119796	0.116918	0.0962115
chr10	28535833	28535909	4413826	0	+	0.25	[0,0.28]	chr10	407132	2	EXON_MRNA	EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	WAC	ENSG00000095787.24	ENST00000680735.1:ENST00000375664.8:ENST00000428935.6:ENST00000651598.1:ENST00000628285.3:ENST00000681112.1:ENST00000528491.5:ENST00000679570.1:ENST00000375646.5:ENST00000354911.9:ENST00000347934.8:ENST00000420266.6:ENST00000651885.1:ENST00000651441.1:ENST00000679398.1:ENST00000424454.5:ENST00000530865.5:ENST00000442148.6:ENST00000448193.5:ENST00000414108.6:ENST00000679428.1:ENST00000439676.5:ENST00000345541.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	103	2	1.23616	1.771285	2.30641	0.0577295	0.0213596	0.188342	0.113755
chr2	131082857	131082957	1228987	0	-	0.42	(0.408,0.44]	chr2	130993	2	SS3_PROX	SS3_PROX:INTRON	FAM168B	ENSG00000152102.18	ENST00000389915.4:ENST00000409185.5	protein_coding	protein_coding	protein_coding	protein_coding	6	43	2	1.35436	1.7712150000000002	2.18807	0.0708044	0.0603719	0.19151	0.184528
chr22	16648625	16648725	7473839	0	+	0.45	(0.44,0.476]	chr22	762026	2	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	TPTEP1	ENSG00000100181.22	ENST00000558085.6:ENST00000400593.6:ENST00000426585.5:ENST00000383140.7	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	27	221	2	1.56643	1.77116	1.97589	0.00652435	0.00144004	0.0699952	0.0347852
chr12	1780543	1780637	5065071	0	+	0.468085	(0.44,0.476]	chr12	477896	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ADIPOR2	ENSG00000006831.10	ENST00000357103.5:ENST00000537190.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	76	2	1.70763	1.77111	1.83459	0.0198542	0.0190437	0.118994	0.109608
chr7	155771691	155771789	3453190	0	+	0.357143	(0.35,0.378]	chr7	322745	47	INTRON	INTRON	RBM33	ENSG00000184863.11	ENST00000401878.8:ENST00000341148.7:ENST00000392755.2	protein_coding	protein_coding	protein_coding	protein_coding	11	98	2	1.57499	1.77101	1.96703	0.0185901	0.0135243	0.117264	0.0949306
chr2	113928837	113928936	854636	0	+	0.444444	(0.44,0.476]	chr2	95917	10	INTRON	INTRON	ACTR3	ENSG00000115091.12	ENST00000443297.5:ENST00000263238.7:ENST00000415792.5:ENST00000446821.5:ENST00000535589.3:ENST00000489779.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	61	2	1.4592	1.770985	2.08277	0.0342963	0.0309998	0.147255	0.13151
chr9	131132095	131132195	4215687	0	+	0.38	(0.378,0.408]	chr9	386527	1	SS3_PROX	SS3_PROX:INTRON	NUP214	ENSG00000126883.19	ENST00000695497.1:ENST00000695498.1:ENST00000695496.1:ENST00000695495.1:ENST00000695494.1:ENST00000695493.1:ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000525561.2:ENST00000651022.1:ENST00000651639.1:ENST00000695499.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	21	177	2	1.36168	1.7708650000000001	2.18005	0.0221524	8.27827e-4	0.115796	0.0263576
chr7	149478553	149478653	3671641	0	-	0.47	(0.44,0.476]	chr7	340777	4	INTRON	INTRON	ZNF746	ENSG00000181220.18	ENST00000644635.1:ENST00000340622.8:ENST00000458143.7:ENST00000685153.1	protein_coding	protein_coding	protein_coding	protein_coding	6	50	2	1.70242	1.770705	1.83899	0.0589734	0.0282713	0.167915	0.137721
chr16	84705060	84705160	6409951	0	+	0.43	(0.408,0.44]	chr16	615261	2	SS5_PROX	SS5_PROX:INTRON	USP10	ENSG00000103194.16	ENST00000562743.5:ENST00000540269.6:ENST00000563892.5:ENST00000562092.1:ENST00000569511.5:ENST00000219473.12:ENST00000564566.1:ENST00000570191.5:ENST00000563048.5:ENST00000562283.5:ENST00000563386.5:ENST00000569038.5:ENST00000570053.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	61	2	1.49523	1.77067	2.04611	0.0534846	0.016628	0.180041	0.102621
chr12	119669674	119669758	5234848	0	+	0.52381	(0.515,0.57]	chr12	496679	4	UTR5	UTR5:EXON_MRNA:INTRON	PRKAB1	ENSG00000111725.11	ENST00000541640.5:ENST00000229328.10:ENST00000537400.1:ENST00000630317.1:ENST00000540121.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	72	2	1.72014	1.770635	1.82113	0.0185015	0.0118311	0.108861	0.0962115
chr20	47338256	47338356	7349327	0	-	0.6	(0.57,1]	chr20	749346	193	INTRON	INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000435836.5:ENST00000446894.5:ENST00000441977.1	protein_coding	protein_coding	protein_coding	protein_coding	7	31	2	1.74185	1.7704149999999998	1.79898	0.0401765	0.0206524	0.143911	0.122348
chr6	15292034	15292134	2823406	0	+	0.58	(0.57,1]	chr6	265190	427	INTRON	INTRON	JARID2	ENSG00000008083.14	ENST00000341776.7:ENST00000397311.4	protein_coding	protein_coding	protein_coding	protein_coding	8	35	2	1.64729	1.7704	1.89351	0.0255126	0.0231375	0.133676	0.118148
chr18	726710	726808	6939835	0	-	0.408163	(0.378,0.408]	chr18	686455	17	INTRON	INTRON	YES1	ENSG00000176105.14	ENST00000584307.5:ENST00000314574.5:ENST00000577961.5	protein_coding	protein_coding	protein_coding	protein_coding	8	75	2	1.72045	1.770385	1.82032	0.0424671	0.01477	0.161763	0.0984422
chr4	64145	64245	1905398	0	+	0.33	(0.32,0.35]	chr4	191003	36	INTRON	INTRON	ZNF595	ENSG00000272602.6	ENST00000608255.2:ENST00000609518.5:ENST00000509152.3:ENST00000610261.6	protein_coding	protein_coding	protein_coding	protein_coding	17	161	2	1.32198	1.77038	2.21878	0.0335564	0.00162622	0.134145	0.0370723
chrX	71546716	71546815	7680084	0	+	0.444444	(0.44,0.476]	chrX	786401	22	EXON_MRNA	EXON_MRNA:INTRON	OGT	ENSG00000147162.14	ENST00000373719.8:ENST00000488174.5:ENST00000373701.7:ENST00000455587.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	27	215	2	1.63693	1.770295	1.90366	0.00337349	0.0028813	0.0533591	0.0475859
chr16	4821122	4821203	6438750	0	-	0.530864	(0.515,0.57]	chr16	620169	4	SS5_PROX	SS5_PROX:INTRON	GLYR1	ENSG00000140632.17	ENST00000321919.14:ENST00000436648.9:ENST00000588732.5:ENST00000589389.5:ENST00000591451.5:ENST00000588297.5:ENST00000586095.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	37	2	1.7492	1.77028	1.79136	0.0638444	0.0382504	0.177811	0.15832
chr19	2203377	2203475	6996574	0	+	0.561224	(0.515,0.57]	chr19	693473	2	INTRON	INTRON	DOT1L	ENSG00000104885.19	ENST00000398665.8:ENST00000686010.1	protein_coding	protein_coding	protein_coding	protein_coding	5	37	2	1.7492	1.77028	1.79136	0.0638444	0.0382504	0.177811	0.15832
chr1	28928165	28928265	59092	0	+	0.4	(0.378,0.408]	chr1	7621	130	INTRON	INTRON	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000647918.1:ENST00000646800.1:ENST00000644342.1:ENST00000646189.1:ENST00000482464.6:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000646260.1:ENST00000373798.5:ENST00000644600.1:ENST00000649674.1:ENST00000643173.1:ENST00000343067.9:ENST00000644780.1:ENST00000650265.1:ENST00000648181.1:ENST00000643604.1:ENST00000648891.1:ENST00000373797.2:ENST00000349460.9:ENST00000645184.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	45	2	1.76032	1.770215	1.78011	0.0721577	0.0356367	0.187433	0.151629
chrX	154081403	154081503	7912935	0	-	0.4	(0.378,0.408]	chrX	805637	79	INTRON	INTRON	MECP2	ENSG00000169057.24	ENST00000303391.11:ENST00000453960.7:ENST00000628176.2:ENST00000407218.5:ENST00000369957.5:ENST00000631210.1:ENST00000496908.5:ENST00000415944.3:ENST00000630151.2:ENST00000676382.1:ENST00000611468.2:ENST00000637533.1:ENST00000675526.1:ENST00000637791.1:ENST00000675841.1:ENST00000674996.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	45	2	1.76032	1.770215	1.78011	0.0721577	0.0356367	0.187433	0.151629
chr18	35333011	35333109	6961932	0	-	0.428571	(0.408,0.44]	chr18	688889	9	UTR3	UTR3:EXON_MRNA	ZNF24	ENSG00000172466.16	ENST00000399061.3:ENST00000261332.11:ENST00000589881.5	protein_coding	protein_coding	protein_coding	protein_coding	5	44	2	1.53263	1.770155	2.00768	0.0733439	0.035843	0.190051	0.152216
chr5	308795	308895	2312995	0	+	0.42	(0.408,0.44]	chr5	223726	7	EXON_MRNA	EXON_MRNA:INTRON	PDCD6	ENSG00000249915.9	ENST00000614778.4:ENST00000618970.4:ENST00000513582.5:ENST00000264933.9:ENST00000505221.5:ENST00000507528.5:ENST00000505526.1:ENST00000507473.1:ENST00000511482.1:ENST00000512466.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	44	2	1.53263	1.770155	2.00768	0.0733439	0.035843	0.190051	0.152216
chr7	101860945	101861045	3366798	0	+	0.49	(0.476,0.515]	chr7	315215	416	INTRON	INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000497815.5:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000607092.1:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000558469.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	43	2	1.74317	1.77005	1.79693	0.0649782	0.0396373	0.179417	0.161534
chr22	32489209	32489308	7507870	0	+	0.282828	(0.28,0.32]	chr22	766245	15	EXON_MRNA	EXON_MRNA:INTRON	FBXO7	ENSG00000100225.18	ENST00000420700.5:ENST00000425028.5:ENST00000266087.12:ENST00000492535.1:ENST00000452138.3:ENST00000397426.5:ENST00000484607.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	19	170	2	1.30174	1.7700049999999998	2.23827	0.0230395	0.00601373	0.126529	0.0674604
chr16	47464393	47464493	6343332	0	+	0.47	(0.44,0.476]	chr16	608848	4	SS5_PROX	SS5_PROX:INTRON	PHKB	ENSG00000102893.17	ENST00000566037.6:ENST00000566044.5:ENST00000299167.12:ENST00000696809.1:ENST00000323584.10:ENST00000565424.2:ENST00000567402.5:ENST00000563376.5:ENST00000564873.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	52	2	1.61163	1.77	1.92837	0.0598319	0.0222222	0.169278	0.124303
chr3	177027539	177027636	1870708	0	-	0.443299	(0.44,0.476]	chr3	187281	12	EXON_MRNA	EXON_MRNA:INTRON	TBL1XR1	ENSG00000177565.18	ENST00000636864.1:ENST00000457928.7:ENST00000430069.5:ENST00000637659.1:ENST00000474363.1:ENST00000673974.1:ENST00000631253.2:ENST00000352800.10:ENST00000422442.6:ENST00000626758.1:ENST00000636348.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	52	2	1.61163	1.77	1.92837	0.0598319	0.0222222	0.169278	0.124303
chrX	9511826	9511926	7619122	0	+	0.45	(0.44,0.476]	chrX	779944	96	INTRON	INTRON	TBL1X	ENSG00000101849.18	ENST00000407597.7:ENST00000380961.5:ENST00000424279.6:ENST00000645353.2:ENST00000422314.5	protein_coding	protein_coding	protein_coding	protein_coding	6	52	2	1.61163	1.77	1.92837	0.0598319	0.0222222	0.169278	0.124303
chr10	63258854	63258953	4633316	0	-	0.383838	(0.378,0.408]	chr10	426215	385	INTRON	INTRON	JMJD1C	ENSG00000171988.20	ENST00000399262.7:ENST00000402544.5:ENST00000542921.5:ENST00000469152.5:ENST00000489372.4:ENST00000633035.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	45	2	1.59317	1.76999	1.94681	0.0603812	0.0457723	0.19151	0.149888
chr2	232857451	232857549	1038896	0	+	0.387755	(0.378,0.408]	chr2	110850	7	UTR3	UTR3:EXON_MRNA	GIGYF2	ENSG00000204120.16	ENST00000629305.2:ENST00000409480.5:ENST00000373563.9:ENST00000409547.5:ENST00000409196.7:ENST00000409451.7:ENST00000677591.1:ENST00000678230.1:ENST00000678339.1:ENST00000677450.1:ENST00000678466.1:ENST00000678885.1:ENST00000676848.1:ENST00000474312.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	45	2	1.59317	1.76999	1.94681	0.0603812	0.0457723	0.19151	0.149888
chr9	88477522	88477620	4152947	0	+	0.397959	(0.378,0.408]	chr9	378769	24	UTR3	UTR3:EXON_MRNA	SPIN1	ENSG00000106723.17	ENST00000375859.4	protein_coding	protein_coding	protein_coding	protein_coding	5	45	2	1.59317	1.76999	1.94681	0.0603812	0.0457723	0.19151	0.149888
chr15	85088537	85088637	6090004	0	+	0.38	(0.378,0.408]	chr15	579535	45	INTRON	INTRON	PDE8A	ENSG00000073417.15	ENST00000310298.8:ENST00000557957.5:ENST00000394553.6:ENST00000339708.9:ENST00000478717.5:ENST00000485596.5:ENST00000559742.5:ENST00000559086.5:ENST00000560789.5:ENST00000557819.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	63	2	1.51223	1.7699250000000002	2.02762	0.051139	0.0181059	0.176696	0.107247
chr11	85660316	85660415	5013435	0	-	0.30303	(0.28,0.32]	chr11	472883	27	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	CREBZF	ENSG00000137504.15	ENST00000682836.1:ENST00000527447.2:ENST00000490820.2:ENST00000528561.5:ENST00000260058.9:ENST00000531515.5:ENST00000534224.1:ENST00000525639.1:ENST00000527529.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	88	2	1.47775	1.7699099999999999	2.06207	0.0653002	0.00876132	0.180158	0.0846118
chr2	167941108	167941180	1259217	0	-	0.555556	(0.515,0.57]	chr2	133359	1	EXON_LNCRNA	EXON_LNCRNA	B3GALT1-AS1	ENSG00000235335.3	ENST00000430546.2:ENST00000657553.1:ENST00000670221.1:ENST00000436982.2:ENST00000654994.1	lncRNA	lncRNA	lncRNA	lncRNA	12	85	2	1.56082	1.76979	1.97876	0.0193183	0.00610685	0.108861	0.0706941
chr7	2367445	2367545	3269759	0	+	0.49	(0.476,0.515]	chr7	303837	4	SS5_PROX	SS5_PROX:INTRON	EIF3B	ENSG00000106263.19	ENST00000360876.9:ENST00000397011.2:ENST00000466199.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	23	175	2	1.47509	1.7696	2.06411	0.00830333	0.00261931	0.0816142	0.0455733
chr16	58608499	58608599	6496169	0	-	0.4	(0.378,0.408]	chr16	628638	86	INTRON	INTRON	CNOT1	ENSG00000125107.19	ENST00000317147.10:ENST00000569240.5:ENST00000567188.5:ENST00000441024.6:ENST00000565605.5:ENST00000564557.1:ENST00000569916.1:ENST00000565697.1:ENST00000569020.5:ENST00000568158.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	87	2	1.67942	1.76955	1.85968	0.0336706	0.0075228099999999996	0.134145	0.0773151
chr6	57136752	57136851	2878535	0	+	0.272727	[0,0.28]	chr6	273283	15	INTRON	INTRON	ZNF451	ENSG00000112200.17	ENST00000357489.7:ENST00000444273.6:ENST00000370706.9:ENST00000491832.6:ENST00000502749.1:ENST00000504603.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	137	2	1.61807	1.76951	1.92095	0.0376815	0.00792024	0.140649	0.0797304
chr16	22299835	22299935	6321549	0	+	0.56	(0.515,0.57]	chr16	605189	4	INTRON	INTRON	POLR3E	ENSG00000058600.16	ENST00000615879.4:ENST00000299853.10:ENST00000564209.5:ENST00000565358.5:ENST00000418581.6:ENST00000564883.5:ENST00000359210.8:ENST00000563024.5:ENST00000561494.5:ENST00000564061.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	51	2	1.56838	1.769365	1.97035	0.0424458	0.0195832	0.161763	0.109483
chr6	57095908	57096006	2878113	0	+	0.459184	(0.44,0.476]	chr6	273232	25	INTRON	INTRON	ZNF451	ENSG00000112200.17	ENST00000515290.5:ENST00000510483.5:ENST00000357489.7:ENST00000370708.8:ENST00000370702.5:ENST00000444273.6:ENST00000370711.9:ENST00000508603.5:ENST00000370706.9:ENST00000491832.6:ENST00000370710.10:ENST00000502749.1:ENST00000504603.1:ENST00000509071.5:ENST00000510989.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	62	2	1.57262	1.76932	1.96602	0.0426807	0.0230575	0.148082	0.126603
chr10	73035936	73036035	4647227	0	-	0.555556	(0.515,0.57]	chr10	427500	52	INTRON	INTRON	P4HA1	ENSG00000122884.13	ENST00000394890.7:ENST00000307116.6:ENST00000373008.6:ENST00000440381.5:ENST00000263556.3	protein_coding	protein_coding	protein_coding	protein_coding	15	101	2	1.26731	1.7692999999999999	2.27129	0.0335953	0.00178129	0.146709	0.0379201
chr5	32155866	32155965	2597331	0	-	0.515152	(0.476,0.515]	chr5	246744	116	INTRON	INTRON	GOLPH3	ENSG00000113384.14	ENST00000265070.7:ENST00000503610.5:ENST00000512668.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	15	124	2	1.67136	1.769295	1.86723	0.0139888	0.00402303	0.0959618	0.0578376
chr10	102113708	102113806	4681274	0	-	0.408163	(0.378,0.408]	chr10	432130	18	INTRON	INTRON	LDB1	ENSG00000198728.11	ENST00000673968.1:ENST00000425280.2:ENST00000361198.9	protein_coding	protein_coding	protein_coding	protein_coding	11	93	2	1.55777	1.769285	1.9808	0.0193744	0.0123757	0.119831	0.0916369
chr10	50336097	50336197	4617799	0	-	0.52	(0.515,0.57]	chr10	425400	84	INTRON	INTRON	SGMS1	ENSG00000198964.14	ENST00000429490.5:ENST00000361781.7:ENST00000602619.1:ENST00000361543.3:ENST00000626236.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	14	103	2	1.26017	1.769225	2.27828	0.04508	0.00105975	0.163403	0.029799
chr8	140977560	140977659	4079840	0	-	0.515152	(0.476,0.515]	chr8	370582	229	INTRON	INTRON	PTK2	ENSG00000169398.20	ENST00000696786.1:ENST00000522684.5:ENST00000395218.3:ENST00000521059.5:ENST00000519993.5:ENST00000340930.7:ENST00000524357.5:ENST00000521791.5:ENST00000523067.5:ENST00000520828.5:ENST00000519881.5:ENST00000520892.5:ENST00000523803.5:ENST00000521907.5:ENST00000517453.5:ENST00000520045.5:ENST00000521332.5:ENST00000524040.5:ENST00000523679.1:ENST00000524257.5:ENST00000523797.1:ENST00000519635.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	72	2	1.5222	1.76919	2.01618	0.0276881	0.0180082	0.137011	0.106756
chr1	185100588	185100684	276117	0	+	0.354167	(0.35,0.378]	chr1	32297	4	UTR3	UTR3:EXON_MRNA	RNF2	ENSG00000121481.11	ENST00000367509.8:ENST00000367510.8	protein_coding	protein_coding	protein_coding	protein_coding	5	48	2	1.56287	1.769185	1.9755	0.0697648	0.0398617	0.184298	0.161534
chr11	47471929	47472029	4949559	0	-	0.32	(0.28,0.32]	chr11	464136	61	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	CELF1	ENSG00000149187.19	ENST00000310513.10:ENST00000687097.1:ENST00000395290.6:ENST00000358597.7:ENST00000395292.6:ENST00000361904.7:ENST00000539455.5:ENST00000531165.5:ENST00000532048.5:ENST00000524648.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	130	2	1.40579	1.769185	2.13258	0.0270181	0.00884547	0.135709	0.0794248
chr6	17672026	17672125	3065859	0	-	0.323232	(0.32,0.35]	chr6	284852	21	INTRON	INTRON	NUP153	ENSG00000124789.12	ENST00000613258.4:ENST00000537253.5:ENST00000262077.3	protein_coding	protein_coding	protein_coding	protein_coding	8	71	2	1.40199	1.769095	2.1362	0.0432025	0.0291083	0.162255	0.128029
chrX	71410940	71411040	7678693	0	+	0.5	(0.476,0.515]	chrX	786269	24	INTRON	INTRON	TAF1	ENSG00000147133.17	ENST00000683202.1:ENST00000373790.9:ENST00000423759.6:ENST00000683782.1:ENST00000683668.1:ENST00000276072.9:ENST00000463163.5:ENST00000373775.8:ENST00000485087.6:ENST00000437147.8:ENST00000683358.1:ENST00000682124.1:ENST00000461764.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	60	2	1.58335	1.76902	1.95469	0.0640461	0.0115753	0.177882	0.0962115
chrX	44922184	44922284	7649092	0	+	0.54	(0.515,0.57]	chrX	782726	478	INTRON	INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000675440.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000621147.5:ENST00000475233.1:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	19	129	2	1.53672	1.7687050000000002	2.00069	0.00836965	0.00291393	0.0822199	0.0480042
chrX	48255832	48255932	7658166	0	+	0.46	(0.44,0.476]	chrX	783659	4	SS5_PROX	SS5_PROX:INTRON	SSX1	ENSG00000126752.8	ENST00000376919.4	protein_coding	protein_coding	protein_coding	protein_coding	9	76	2	1.66775	1.7686700000000002	1.86959	0.0219883	0.0176166	0.123836	0.105146
chr9	131145242	131145340	4215825	0	+	0.397959	(0.378,0.408]	chr9	386559	6	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	NUP214	ENSG00000126883.19	ENST00000695497.1:ENST00000695498.1:ENST00000695496.1:ENST00000695495.1:ENST00000695494.1:ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000525561.2:ENST00000651022.1:ENST00000530863.1:ENST00000525980.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	15	128	2	1.36554	1.768665	2.17179	0.0323196	0.00178023	0.132958	0.039274
chr4	39714061	39714161	1953151	0	+	0.46	(0.44,0.476]	chr4	195630	153	INTRON	INTRON	UBE2K	ENSG00000078140.14	ENST00000510934.5:ENST00000261427.10:ENST00000438068.6:ENST00000513231.5:ENST00000503368.5:ENST00000445950.2:ENST00000510719.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	19	157	2	1.72149	1.768635	1.81578	0.00781871	0.00330163	0.0759358	0.0527031
chr1	17419322	17419421	384777	0	-	0.565657	(0.515,0.57]	chr1	45465	23	INTRON	INTRON	RCC2	ENSG00000179051.14	ENST00000375436.9:ENST00000375433.3	protein_coding	protein_coding	protein_coding	protein_coding	10	71	2	1.44339	1.7685899999999999	2.09379	0.0352285	0.00680216	0.150284	0.071184
chr1	32662145	32662245	65940	0	+	0.44	(0.408,0.44]	chr1	8424	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	RBBP4	ENSG00000162521.19	ENST00000414241.7:ENST00000527118.5:ENST00000373493.10:ENST00000401893.7:ENST00000524393.5:ENST00000492348.6:ENST00000526193.5:ENST00000373485.5:ENST00000477563.6:ENST00000458695.6:ENST00000445722.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	85	2	1.57567	1.768495	1.96132	0.033074	0.00701866	0.133898	0.0754576
chrX	154381292	154381387	7738171	0	+	0.621053	(0.57,1]	chrX	791942	2	UTR3	UTR3:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	EMD	ENSG00000102119.12	ENST00000369842.9:ENST00000682114.1:ENST00000684678.1:ENST00000683627.1:ENST00000684633.1:ENST00000682478.1:ENST00000683576.1:ENST00000471965.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	24	100	2	1.51414	1.768475	2.02281	0.00730278	5.57945e-4	0.073467	0.0215177
chr1	225783868	225783967	327303	0	+	0.373737	(0.35,0.378]	chr1	37657	1	INTRON	INTRON	SRP9	ENSG00000143742.14	ENST00000626563.2:ENST00000619790.4:ENST00000304786.12:ENST00000650651.1:ENST00000366839.8:ENST00000651465.1:ENST00000651761.1:ENST00000651653.1:ENST00000366838.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	54	2	1.49446	1.7683499999999999	2.04224	0.054297	0.0363073	0.182243	0.138959
chr21	22270806	22270906	7385076	0	+	0.42	(0.408,0.44]	chr21	752727	576	INTRON	INTRON	ENSG00000226043	ENSG00000226043.2	ENST00000667099.1:ENST00000654607.1:ENST00000444130.1	lncRNA	lncRNA	lncRNA	lncRNA	18	152	2	1.69925	1.7683149999999999	1.83738	0.00746067	0.00459091	0.0748354	0.0623576
chr5	28934181	28934281	2331094	0	+	0.39	(0.378,0.408]	chr5	225139	70	INTRON	INTRON	LINC02109	ENSG00000259786.7	ENST00000658190.1	lncRNA	lncRNA	lncRNA	lncRNA	7	62	2	1.71374	1.76816	1.82258	0.0341279	0.0274158	0.136498	0.135102
chr16	15867152	15867247	6451735	0	-	0.410526	(0.408,0.44]	chr16	621903	16	UTR3	UTR3:EXON_MRNA	CEP20	ENSG00000133393.13	ENST00000255759.11:ENST00000573968.5:ENST00000573087.5:ENST00000573396.5:ENST00000575744.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	96	2	1.38093	1.7679999999999998	2.15507	0.0305221	0.00618525	0.143385	0.0677395
chr7	138530622	138530721	3435351	0	+	0.494949	(0.476,0.515]	chr7	319991	10	INTRON	INTRON	TRIM24	ENSG00000122779.18	ENST00000343526.9:ENST00000415680.6:ENST00000497516.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	74	2	1.7425	1.767955	1.79341	0.0417334	0.009837	0.147007	0.0877296
chr5	139648546	139648646	2501200	0	+	0.63	(0.57,1]	chr5	239065	3	UTR5	UTR5:EXON_MRNA:INTRON	CXXC5	ENSG00000171604.12	ENST00000502295.1:ENST00000504944.1:ENST00000302517.8	protein_coding	protein_coding	protein_coding	protein_coding	15	64	2	1.72801	1.76794	1.80787	0.0086124	0.00506241	0.0838082	0.0621733
chr11	5471617	5471717	4897938	0	-	0.25	[0,0.28]	chr11	459195	23	INTRON	INTRON	HBG2:ENSG00000239920:HBE1:OR51B5	ENSG00000196565.15:ENSG00000239920.2:ENSG00000213931.7:ENSG00000167355.8	ENST00000380252.6:ENST00000380259.7:ENST00000292896.3:ENST00000380237.5:ENST00000420726.6:ENST00000420465.6:ENST00000415970.6:ENST00000418729.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:nonsense_mediated_decay:processed_transcript	10	123	2	1.342	1.76793	2.19386	0.0660009	0.00599636	0.181924	0.0700606
chr7	32498596	32498695	3303264	0	+	0.292929	(0.28,0.32]	chr7	306758	24	INTRON	INTRON	AVL9	ENSG00000105778.20	ENST00000485228.1:ENST00000318709.9:ENST00000459629.1:ENST00000409301.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	93	2	1.56729	1.767655	1.96802	0.0260617	0.0251578	0.133676	0.12011
chr1	21722452	21722547	396241	0	-	0.463158	(0.44,0.476]	chr1	47269	3	INTRON	INTRON	USP48	ENSG00000090686.16	ENST00000400301.5:ENST00000308271.14:ENST00000374732.7:ENST00000529637.5:ENST00000487880.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	106	2	1.50031	1.76737	2.03443	0.0195301	0.00616397	0.120063	0.067653
chr8	31037472	31037572	3727968	0	+	0.39	(0.378,0.408]	chr8	346522	31	INTRON	INTRON	WRN	ENSG00000165392.11	ENST00000650667.1:ENST00000298139.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	59	2	1.70953	1.7673649999999999	1.8252	0.0619563	0.0190881	0.174514	0.119229
chr8	31060844	31060942	3728205	0	+	0.418367	(0.408,0.44]	chr8	346535	12	INTRON	INTRON	WRN	ENSG00000165392.11	ENST00000650667.1:ENST00000298139.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	74	2	1.74555	1.76718	1.78881	0.0370259	0.0118908	0.139194	0.0962115
chr18	73244902	73245002	6988422	0	-	0.44	(0.408,0.44]	chr18	691704	438	INTRON	INTRON	LINC02864	ENSG00000263711.6	ENST00000584544.5:ENST00000581011.5:ENST00000581862.6:ENST00000669547.1:ENST00000661525.1:ENST00000583405.5	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	13	111	2	1.42285	1.76709	2.11133	0.0421231	0.00160206	0.148082	0.0367961
chr3	25663229	25663328	1642153	0	-	0.414141	(0.408,0.44]	chr3	168598	174	INTRON	INTRON	TOP2B	ENSG00000077097.16	ENST00000264331.9:ENST00000435706.6:ENST00000424225.1	protein_coding	protein_coding	protein_coding	protein_coding	11	93	2	1.35833	1.76705	2.17577	0.0512983	0.00269594	0.158153	0.0479115
chr20	5589549	5589648	7312127	0	-	0.383838	(0.378,0.408]	chr20	744600	29	INTRON	INTRON	GPCPD1	ENSG00000125772.14	ENST00000379019.7:ENST00000481690.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	63	2	1.42205	1.766995	2.11194	0.0390695	0.0292534	0.161228	0.128055
chr15	50560497	50560596	6171972	0	-	0.181818	[0,0.28]	chr15	588182	35	UTR3	UTR3:EXON_MRNA:INTRON	TRPM7	ENSG00000092439.16	ENST00000561267.5:ENST00000646667.1:ENST00000560955.5	protein_coding	protein_coding	protein_coding	protein_coding	11	109	2	1.16449	1.76695	2.36941	0.0642343	0.0178556	0.199605	0.106151
chr17	80393797	80393897	6684476	0	+	0.5	(0.476,0.515]	chr17	653304	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	RNF213	ENSG00000173821.20	ENST00000582970.6:ENST00000508628.6:ENST00000411702.7:ENST00000427003.7:ENST00000560083.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	50	2	1.73688	1.766905	1.79693	0.0649782	0.0252731	0.179417	0.133676
chr7	50789658	50789757	3532651	0	-	0.353535	(0.35,0.378]	chr7	329547	69	INTRON	INTRON	GRB10	ENSG00000106070.20	ENST00000335866.7:ENST00000644769.1:ENST00000644879.1:ENST00000402497.6:ENST00000645075.2:ENST00000439044.7:ENST00000644716.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	61	2	1.59904	1.76668	1.93432	0.0481438	0.0285976	0.153019	0.139244
chr16	89813340	89813436	6544796	0	-	0.458333	(0.44,0.476]	chr16	634616	19	INTRON	INTRON	FANCA	ENSG00000187741.16	ENST00000561667.2:ENST00000389301.8:ENST00000568369.6:ENST00000564475.6:ENST00000696275.1:ENST00000696287.1:ENST00000696286.1:ENST00000696291.1:ENST00000696276.1:ENST00000567205.2:ENST00000567284.7:ENST00000696277.1:ENST00000696292.1:ENST00000563767.2:ENST00000567621.6:ENST00000696288.1:ENST00000696293.1:ENST00000566889.5:ENST00000389302.7:ENST00000696294.1:ENST00000696295.1:ENST00000563673.5:ENST00000543736.5:ENST00000534992.5:ENST00000565582.5:ENST00000696296.1:ENST00000563513.1:ENST00000567883.5:ENST00000567943.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	19	152	2	1.29932	1.76662	2.23392	0.0289459	8.39954e-4	0.127413	0.0263691
chr8	11804606	11804704	3702540	0	+	0.520408	(0.515,0.57]	chr8	343487	7	INTRON	INTRON	FDFT1	ENSG00000079459.13	ENST00000538689.4:ENST00000615631.4:ENST00000618539.4:ENST00000530337.5:ENST00000623368.3:ENST00000446331.6:ENST00000443614.6:ENST00000220584.9:ENST00000525607.5:ENST00000525283.5:ENST00000529464.5:ENST00000525900.5:ENST00000528812.5:ENST00000622850.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	18	124	2	1.72297	1.766605	1.81024	0.00698177	0.00389967	0.0718189	0.0569466
chr7	121395561	121395661	3630896	0	-	0.46	(0.44,0.476]	chr7	337397	122	INTRON	INTRON	FAM3C	ENSG00000196937.11	ENST00000359943.8:ENST00000412653.5:ENST00000426156.1	protein_coding	protein_coding	protein_coding	protein_coding	5	43	2	1.69402	1.766505	1.83899	0.0589734	0.0456129	0.167915	0.164236
chr3	37287612	37287712	1396202	0	+	0.45	(0.44,0.476]	chr3	146349	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	GOLGA4	ENSG00000144674.17	ENST00000435830.6:ENST00000444882.5:ENST00000356847.8:ENST00000450863.6:ENST00000361924.7:ENST00000429018.5:ENST00000419177.3:ENST00000437131.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	99	2	1.71377	1.7664900000000001	1.81921	0.0142184	0.0102504	0.0960818	0.089002
chr19	28537276	28537376	7166468	0	-	0.44	(0.408,0.44]	chr19	724193	21	INTRON	INTRON	ENSG00000283403	ENSG00000283403.1	ENST00000592347.5	lncRNA	lncRNA	lncRNA	lncRNA	14	113	2	1.45004	1.76643	2.08282	0.020059	0.0051355	0.121028	0.062965
chr21	9109295	9109395	7426432	0	-	0.3	(0.28,0.32]	chr21	757579	210	INTRON	INTRON	TEKT4P2	ENSG00000188681.12	ENST00000690061.1:ENST00000689141.1:ENST00000688310.1:ENST00000687537.1:ENST00000690096.1:ENST00000687888.1:ENST00000690389.1:ENST00000684989.1:ENST00000416067.6:ENST00000693307.1:ENST00000692383.1:ENST00000685666.1:ENST00000688451.1:ENST00000691190.1:ENST00000685532.1:ENST00000687488.1:ENST00000690713.1:ENST00000691834.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	10	107	2	1.70122	1.766425	1.83163	0.0356118	0.00983832	0.138061	0.0877296
chr3	180942889	180942989	1568912	0	+	0.32	(0.28,0.32]	chr3	162382	73	INTRON	INTRON	FXR1	ENSG00000114416.18	ENST00000469882.5:ENST00000484790.5:ENST00000465551.5:ENST00000305586.11:ENST00000475315.5:ENST00000357559.9:ENST00000468861.5:ENST00000491062.5:ENST00000479176.5:ENST00000445140.6:ENST00000472339.5:ENST00000484958.5:ENST00000480918.5:ENST00000484042.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	87	2	1.56907	1.7664149999999998	1.96376	0.0480066	0.0208069	0.153019	0.122348
chr21	9363385	9363484	7367767	0	+	0.40404	(0.378,0.408]	chr21	751936	92	INTRON	INTRON	ENSG00000278932	ENSG00000278932.5	ENST00000622961.3:ENST00000686553.1:ENST00000691955.1:ENST00000692626.1:ENST00000685951.1:ENST00000686510.1:ENST00000692884.1	lncRNA	lncRNA	lncRNA	lncRNA	9	79	2	1.41201	1.76636	2.12071	0.0550809	0.00601933	0.165463	0.0700813
chr19	3983856	3983949	7119157	0	-	0.580645	(0.57,1]	chr19	716112	1	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	EEF2	ENSG00000167658.16	ENST00000309311.7:ENST00000600720.1:ENST00000594885.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	27	2	1.63919	1.76635	1.89351	0.05421	0.0255126	0.164887	0.133676
chr2	96888946	96889045	1182114	0	-	0.606061	(0.57,1]	chr2	126720	101	INTRON	INTRON	FAM178B	ENSG00000168754.15	ENST00000393526.6:ENST00000490605.3:ENST00000470789.5:ENST00000494172.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	27	2	1.63919	1.76635	1.89351	0.05421	0.0255126	0.164887	0.133676
chr10	74005258	74005358	4454572	0	+	0.54	(0.515,0.57]	chr10	411385	65	INTRON	INTRON	VCL	ENSG00000035403.18	ENST00000623461.3:ENST00000372755.7:ENST00000624354.3:ENST00000211998.10:ENST00000478896.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	15	106	2	1.65052	1.76633	1.88214	0.0109048	0.00447641	0.0873034	0.0610799
chr12	122594179	122594275	5241304	0	+	0.333333	(0.32,0.35]	chr12	497803	9	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	KNTC1	ENSG00000184445.12	ENST00000450485.6:ENST00000333479.12:ENST00000535186.1:ENST00000423927.2:ENST00000545065.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	70	2	1.42542	1.766185	2.10695	0.0718205	0.0127483	0.187046	0.0987441
chr21	39195692	39195787	7464317	0	-	0.4	(0.378,0.408]	chr21	760358	11	UTR3	UTR3:EXON_MRNA:INTRON	BRWD1	ENSG00000185658.14	ENST00000333229.6:ENST00000342449.8:ENST00000446924.5:ENST00000380800.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	21	155	2	1.09763	1.76617	2.43471	0.041414	0.00112896	0.161578	0.0307488
chr6	89810233	89810333	3161944	0	-	0.52	(0.515,0.57]	chr6	294886	63	INTRON	INTRON	MDN1	ENSG00000112159.12	ENST00000369393.8:ENST00000629399.2:ENST00000439638.1	protein_coding	protein_coding	protein_coding	protein_coding	5	37	2	1.49871	1.76616	2.03361	0.0770828	0.0325854	0.196285	0.145164
chr7	75458510	75458610	3558652	0	-	0.49	(0.476,0.515]	chr7	331545	159	INTRON	INTRON	POM121C	ENSG00000272391.6	ENST00000615331.5:ENST00000398379.2	protein_coding	protein_coding	protein_coding	protein_coding	13	108	2	1.59633	1.76612	1.93591	0.0233044	0.0038383	0.118272	0.0562562
chr7	12355076	12355165	3484925	0	-	0.325843	(0.32,0.35]	chr7	325868	2	INTRON	INTRON	VWDE	ENSG00000146530.15	ENST00000275358.8:ENST00000452576.6:ENST00000521169.5:ENST00000644150.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	16	153	2	1.42586	1.7661099999999998	2.10636	0.020823	0.00397774	0.122348	0.0549214
chr10	21704099	21704199	4406131	0	+	0.46	(0.44,0.476]	chr10	406537	71	INTRON	INTRON	MLLT10	ENSG00000078403.17	ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000651298.1:ENST00000377059.7:ENST00000651382.1:ENST00000438473.6:ENST00000420525.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	52	2	1.71574	1.765845	1.81595	0.045256	0.0317953	0.149888	0.14477
chr20	35732710	35732806	7336456	0	-	0.3125	(0.28,0.32]	chr20	747475	7	EXON_MRNA	EXON_MRNA:INTRON	RBM39	ENSG00000131051.24	ENST00000253363.11:ENST00000639702.1:ENST00000656873.1:ENST00000463004.5:ENST00000361162.10:ENST00000461283.5:ENST00000403542.6:ENST00000338163.10:ENST00000528062.7:ENST00000429968.5:ENST00000444878.5:ENST00000665058.1:ENST00000492779.5:ENST00000374038.7:ENST00000412738.5:ENST00000434927.5:ENST00000425184.5:ENST00000481037.5:ENST00000455343.5:ENST00000416108.5:ENST00000426951.5:ENST00000477334.1:ENST00000442447.5:ENST00000449489.5:ENST00000433027.5:ENST00000487604.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	21	227	2	1.4847	1.76581	2.04692	0.0292243	8.76632e-4	0.128055	0.0269657
chr10	43402031	43402131	4605435	0	-	0.33	(0.32,0.35]	chr10	424262	48	INTRON	INTRON	HNRNPF	ENSG00000169813.17	ENST00000356053.7:ENST00000357065.8:ENST00000682386.1:ENST00000337970.7	protein_coding	protein_coding	protein_coding	protein_coding	10	94	2	1.30487	1.76571	2.22655	0.0550088	0.00823133	0.165463	0.0812969
chr22	21616751	21616850	7482197	0	+	0.363636	(0.35,0.378]	chr22	763251	17	INTRON	INTRON	UBE2L3	ENSG00000185651.16	ENST00000458578.6:ENST00000545681.2:ENST00000696046.1:ENST00000342192.9:ENST00000496722.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	66	2	1.38867	1.7656550000000002	2.14264	0.0441117	0.0274795	0.162255	0.123904
chr7	75429941	75430041	3558362	0	-	0.45	(0.44,0.476]	chr7	331515	31	INTRON	INTRON	POM121C	ENSG00000272391.6	ENST00000615331.5:ENST00000607367.5:ENST00000473168.1:ENST00000439629.2:ENST00000479864.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	60	2	1.60033	1.765585	1.93084	0.0443175	0.030306	0.162302	0.130104
chr1	230089089	230089189	334297	0	+	0.3	(0.28,0.32]	chr1	38926	213	INTRON	INTRON	GALNT2	ENSG00000143641.10	ENST00000494106.1:ENST00000366672.5:ENST00000488903.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	95	2	1.38578	1.76556	2.14534	0.0537519	0.0117054	0.163832	0.0962115
chr5	57236912	57237012	2358691	0	+	0.32	(0.28,0.32]	chr5	227592	4	SS3_PROX	SS3_PROX:INTRON	GPBP1	ENSG00000062194.16	ENST00000424459.7:ENST00000514387.6:ENST00000506184.7:ENST00000511209.5:ENST00000264779.6:ENST00000513732.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	79	2	1.56729	1.765525	1.96376	0.0480066	0.0260617	0.153019	0.133676
chr6	26198063	26198161	3071026	0	-	0.295918	(0.28,0.32]	chr6	285439	4	INTRON	INTRON	ENSG00000282988	ENSG00000282988.2	ENST00000635641.1:ENST00000650491.1:ENST00000635200.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	19	193	2	1.30072	1.7654100000000001	2.2301	0.0338874	0.00173877	0.134508	0.038529
chr22	20082551	20082648	7478252	0	+	0.56701	(0.515,0.57]	chr22	762700	15	INTRON	INTRON	DGCR8	ENSG00000128191.16	ENST00000383024.6:ENST00000351989.8:ENST00000457069.1	protein_coding	protein_coding	protein_coding	protein_coding	19	139	2	1.19616	1.765395	2.33463	0.0391401	3.5823e-4	0.161491	0.0175484
chr17	1454479	1454579	6699954	0	-	0.4	(0.378,0.408]	chr17	655571	170	INTRON	INTRON	CRK	ENSG00000167193.8	ENST00000398970.5:ENST00000300574.3:ENST00000574295.1:ENST00000572145.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	46	2	1.63458	1.7653949999999998	1.89621	0.0573057	0.0488044	0.173377	0.167723
chr22	49815520	49815620	7603102	0	-	0.39	(0.378,0.408]	chr22	778655	108	INTRON	INTRON	BRD1	ENSG00000100425.19	ENST00000404760.6:ENST00000404034.5:ENST00000216267.12:ENST00000438393.5:ENST00000457780.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	46	2	1.63458	1.7653949999999998	1.89621	0.0573057	0.0488044	0.173377	0.167723
chrX	44906085	44906185	7648931	0	+	0.39	(0.378,0.408]	chrX	782726	317	INTRON	INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000675440.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000621147.5:ENST00000475233.1:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	105	2	1.45545	1.76526	2.07507	0.0387769	0.00284959	0.143072	0.0494641
chr9	97999178	97999277	4173199	0	+	0.424242	(0.408,0.44]	chr9	380281	1	INTRON	INTRON	ANP32B	ENSG00000136938.9	ENST00000339399.5:ENST00000473205.1:ENST00000486769.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	84	2	1.66104	1.76515	1.86926	0.0349715	0.00709955	0.13747500000000001	0.0755905
chr12	53458871	53458971	5142957	0	+	0.4	(0.378,0.408]	chr12	485395	2	SS3_PROX	SS3_PROX:INTRON	PCBP2	ENSG00000197111.16	ENST00000546463.6:ENST00000437231.5:ENST00000447282.5:ENST00000359282.9:ENST00000549863.5:ENST00000359462.9:ENST00000550520.6:ENST00000552296.6:ENST00000551104.5:ENST00000552819.5:ENST00000455667.7:ENST00000439930.7:ENST00000548933.5:ENST00000546652.6:ENST00000562264.5:ENST00000548190.1:ENST00000550585.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	14	117	2	1.23174	1.76513	2.29852	0.0502607	0.00152853	0.156383	0.0361457
chr19	34175155	34175254	7050829	0	+	0.242424	[0,0.28]	chr19	703187	20	INTRON	INTRON	LSM14A	ENSG00000257103.9	ENST00000544216.8:ENST00000589878.5:ENST00000540746.6:ENST00000433627.9:ENST00000586157.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	88	2	1.62991	1.76513	1.90035	0.0671202	0.0173564	0.183051	0.112318
chr1	202772570	202772669	620385	0	-	0.363636	(0.35,0.378]	chr1	73643	26	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	KDM5B	ENSG00000117139.18	ENST00000367265.9:ENST00000648338.1:ENST00000649542.1:ENST00000647757.1:ENST00000367264.7:ENST00000648473.1:ENST00000650569.1:ENST00000648056.1:ENST00000649770.1:ENST00000648469.1:ENST00000650417.1:ENST00000235790.9:ENST00000650422.1:ENST00000648738.1:ENST00000648958.1:ENST00000602511.1:ENST00000650368.1:ENST00000649200.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	91	2	1.71411	1.76512	1.81613	0.0310697	0.00932362	0.13151	0.085606
chr5	6607980	6608076	2566516	0	-	0.291667	(0.28,0.32]	chr5	245907	2	INTRON	INTRON	NSUN2	ENSG00000037474.15	ENST00000264670.11:ENST00000504374.5:ENST00000505892.5:ENST00000506139.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	55	2	1.71442	1.76512	1.81582	0.068122	0.0454351	0.184298	0.164236
chrX	155238941	155239041	7740769	0	+	0.2	[0,0.28]	chrX	792602	2	UTR3	UTR3:EXON_MRNA	VBP1	ENSG00000155959.12	ENST00000535916.5:ENST00000625964.2:ENST00000286428.7:ENST00000460509.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	19	207	2	1.18665	1.765095	2.34354	0.0415955	0.00328588	0.161736	0.0510063
chr7	131374923	131375023	3416913	0	+	0.37	(0.35,0.378]	chr7	319188	1	SS3_PROX	SS3_PROX:INTRON	MKLN1	ENSG00000128585.18	ENST00000421797.6:ENST00000416992.6:ENST00000429546.5:ENST00000446815.5:ENST00000494286.5:ENST00000352689.11:ENST00000494785.5:ENST00000458153.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	62	2	1.71241	1.76504	1.81767	0.0640429	0.019274	0.177882	0.119831
chr19	28479369	28479469	7165888	0	-	0.3	(0.28,0.32]	chr19	724189	111	INTRON	INTRON	ENSG00000283403:ENSG00000267243	ENSG00000283403.1:ENSG00000267243.6	ENST00000592347.5:ENST00000593065.5	lncRNA	lncRNA	lncRNA	lncRNA	8	85	2	1.69688	1.764955	1.83303	0.0370023	0.0219684	0.139194	0.123836
chr3	134198657	134198757	1823138	0	-	0.37	(0.35,0.378]	chr3	183454	31	INTRON	INTRON	RYK	ENSG00000163785.13	ENST00000623711.4:ENST00000460933.5:ENST00000620660.4	protein_coding	protein_coding	protein_coding	protein_coding	6	54	2	1.59505	1.764685	1.93432	0.0481438	0.040425	0.161534	0.153019
chr11	70435237	70435313	4822004	0	+	0.263158	[0,0.28]	chr11	449684	2	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CTTN	ENSG00000085733.16	ENST00000346329.7:ENST00000301843.13:ENST00000376561.7:ENST00000393747.3:ENST00000529736.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	29	355	2	1.55823	1.764645	1.97106	0.013918	0.0017442	0.0957076	0.0386026
chr20	47316265	47316364	7349106	0	-	0.434343	(0.408,0.44]	chr20	749342	57	INTRON	INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000468376.2:ENST00000435836.5:ENST00000446894.5:ENST00000441977.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	51	2	1.44993	1.76456	2.07919	0.0638951	0.0291499	0.177824	0.14147
chr20	34884087	34884187	7261060	0	+	0.39	(0.378,0.408]	chr20	737645	7	INTRON	INTRON	ACSS2	ENSG00000131069.20	ENST00000481971.5:ENST00000488172.5:ENST00000497927.5:ENST00000481284.5:ENST00000475459.6:ENST00000484354.1:ENST00000480274.1:ENST00000477932.5:ENST00000473172.5:ENST00000493805.6:ENST00000480978.5:ENST00000360596.7:ENST00000467019.5:ENST00000253382.5:ENST00000476922.5:ENST00000464399.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	11	95	2	1.2488	1.7643749999999998	2.27995	0.0562531	0.00388691	0.184145	0.0544347
chr5	141614104	141614204	2740140	0	-	0.33	(0.32,0.35]	chr5	258168	255	INTRON	INTRON	DIAPH1	ENSG00000131504.18	ENST00000647433.1:ENST00000389054.8:ENST00000518047.5:ENST00000523100.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	70	2	1.63843	1.7643650000000002	1.8903	0.0360919	0.0298043	0.152563	0.129138
chr15	68065742	68065841	6056068	0	+	0.494949	(0.476,0.515]	chr15	576554	39	INTRON	INTRON	PIAS1	ENSG00000033800.14	ENST00000564915.5:ENST00000249636.11:ENST00000562190.1:ENST00000545237.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	43	2	1.72558	1.7642099999999998	1.80284	0.0767648	0.033161	0.196164	0.145899
chr4	126445236	126445336	2235157	0	-	0.4	(0.378,0.408]	chr4	219005	99	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1:ENST00000651327.1	lncRNA	lncRNA	lncRNA	lncRNA	7	57	2	1.36527	1.7641499999999999	2.16303	0.0587392	0.0252473	0.189982	0.12011
chr10	35134011	35134110	4422775	0	+	0.353535	(0.35,0.378]	chr10	407755	61	INTRON	INTRON	CREM	ENSG00000095794.20	ENST00000474362.5:ENST00000374721.7:ENST00000496626.5:ENST00000685392.1:ENST00000482646.5:ENST00000489388.5:ENST00000374726.7:ENST00000461968.5:ENST00000490460.5:ENST00000466251.5:ENST00000482633.5:ENST00000495960.5:ENST00000686585.1:ENST00000429130.7:ENST00000469949.6:ENST00000460270.5:ENST00000496019.5:ENST00000354759.7:ENST00000489321.5:ENST00000374728.7:ENST00000427847.6:ENST00000345491.7:ENST00000487132.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	47	2	1.71046	1.764065	1.81767	0.0640429	0.0441269	0.177882	0.162255
chr15	42539608	42539707	6156853	0	-	0.373737	(0.35,0.378]	chr15	586055	19	UTR3	UTR3:EXON_MRNA	LRRC57	ENSG00000180979.10	ENST00000323443.6:ENST00000397130.8	protein_coding	protein_coding	protein_coding	protein_coding	6	58	2	1.65083	1.7640449999999999	1.87726	0.0521072	0.0297629	0.177022	0.12908
chr19	10191239	10191339	7134843	0	-	0.37	(0.35,0.378]	chr19	719261	68	INTRON	INTRON	DNMT1	ENSG00000130816.17	ENST00000340748.8:ENST00000359526.9:ENST00000592705.5:ENST00000679103.1:ENST00000677634.1:ENST00000676820.1:ENST00000677250.1:ENST00000677013.1:ENST00000677685.1:ENST00000676610.1:ENST00000678804.1:ENST00000679313.1:ENST00000677946.1:ENST00000586988.5:ENST00000588952.5:ENST00000588118.5:ENST00000592342.5:ENST00000592054.5:ENST00000586800.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	58	2	1.65083	1.7640449999999999	1.87726	0.0521072	0.0297629	0.177022	0.12908
chr1	176070572	176070672	590334	0	-	0.47	(0.44,0.476]	chr1	70908	239	INTRON	INTRON	COP1	ENSG00000143207.21	ENST00000367669.8:ENST00000367667.5:ENST00000461830.6:ENST00000367666.5:ENST00000649803.1:ENST00000308769.12:ENST00000459744.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	57	2	1.38203	1.76388	2.14573	0.058781	0.0238593	0.167915	0.129075
chr6	87166192	87166292	2913363	0	+	0.3	(0.28,0.32]	chr6	275276	101	INTRON	INTRON	ZNF292	ENSG00000188994.13	ENST00000392985.3:ENST00000369577.8:ENST00000369578.6:ENST00000518845.1:ENST00000339907.8:ENST00000496806.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	63	2	1.47299	1.763785	2.05458	0.0597769	0.0381508	0.189982	0.141764
chr1	86968547	86968646	154133	0	+	0.494949	(0.476,0.515]	chr1	16962	97	INTRON	INTRON	HS2ST1	ENSG00000153936.18	ENST00000370550.10:ENST00000370551.8:ENST00000687893.1:ENST00000693745.1:ENST00000689904.1:ENST00000690674.1:ENST00000591456.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	49	2	1.53534	1.763655	1.99197	0.0476737	0.039572	0.170116	0.143072
chr1	235276043	235276143	663341	0	-	0.49	(0.476,0.515]	chr1	78552	149	INTRON	INTRON	ARID4B	ENSG00000054267.22	ENST00000349213.7:ENST00000366603.6:ENST00000264183.9:ENST00000421364.5:ENST00000491632.5:ENST00000418304.1:ENST00000466653.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	49	2	1.53534	1.763655	1.99197	0.0476737	0.039572	0.170116	0.143072
chr12	122092063	122092163	5239995	0	+	0.39	(0.378,0.408]	chr12	497496	124	INTRON	INTRON	MLXIP	ENSG00000175727.14	ENST00000319080.12	protein_coding	protein_coding	protein_coding	protein_coding	13	114	2	1.61829	1.763595	1.9089	0.0153255	0.00763296	0.108569	0.0752119
chr22	22551389	22551489	7562385	0	-	0.48	(0.476,0.515]	chr22	773607	3	SS3_PROX	SS3_PROX:INTRON	PRAME	ENSG00000185686.18	ENST00000492657.5:ENST00000398743.6:ENST00000405655.8:ENST00000543184.5:ENST00000398741.5:ENST00000402697.5:ENST00000439106.5:ENST00000438888.5:ENST00000420709.5:ENST00000476336.5:ENST00000485532.1:ENST00000406503.1:ENST00000442481.5:ENST00000403441.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	15	117	2	1.44035	1.76354	2.08673	0.0181194	0.00486567	0.114853	0.0607461
chr6	17658375	17658474	3065717	0	-	0.333333	(0.32,0.35]	chr6	284824	61	INTRON	INTRON	NUP153	ENSG00000124789.12	ENST00000613258.4:ENST00000537253.5:ENST00000262077.3	protein_coding	protein_coding	protein_coding	protein_coding	18	159	2	1.46266	1.763535	2.06441	0.0129296	0.00668335	0.0990673	0.0706523
chr12	46360817	46360915	5316568	0	-	0.377551	(0.35,0.378]	chr12	505763	28	UTR3	UTR3:EXON_MRNA	SLC38A2	ENSG00000134294.14	ENST00000256689.10:ENST00000549258.5:ENST00000551374.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	110	2	1.57496	1.7633999999999999	1.95184	0.0271411	0.0052326	0.123904	0.0656295
chr7	23382816	23382916	3502784	0	-	0.39	(0.378,0.408]	chr7	326877	198	INTRON	INTRON	IGF2BP3	ENSG00000136231.14	ENST00000258729.8:ENST00000421467.6:ENST00000468263.5:ENST00000492771.5:ENST00000479504.5:ENST00000466809.6:ENST00000491719.5:ENST00000465058.5:ENST00000469723.5:ENST00000474105.5:ENST00000476938.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	88	2	1.70653	1.7632850000000002	1.82004	0.0219966	0.012605	0.115395	0.0980801
chrX	71552520	71552620	7680143	0	+	0.53	(0.515,0.57]	chrX	786405	41	INTRON	INTRON	OGT	ENSG00000147162.14	ENST00000373719.8:ENST00000488174.5:ENST00000373701.7:ENST00000455587.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	51	2	1.63184	1.76323	1.89462	0.0545832	0.0139002	0.165292	0.10247
chr2	171923186	171923282	918364	0	+	0.28125	(0.28,0.32]	chr2	101174	7	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:INTRON	HAT1	ENSG00000128708.13	ENST00000412731.5:ENST00000264108.5:ENST00000457761.6:ENST00000460481.1:ENST00000494601.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	55	2	1.61031	1.76321	1.91611	0.0600513	0.0539102	0.190658	0.164153
chr6	4872396	4872496	2791823	0	+	0.55	(0.515,0.57]	chr6	263602	357	INTRON	INTRON	CDYL	ENSG00000153046.18	ENST00000328908.9:ENST00000491864.1:ENST00000440139.5:ENST00000483019.1:ENST00000397588.8:ENST00000472453.5:ENST00000449732.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	42	2	1.44089	1.76318	2.08547	0.0617046	0.0289426	0.193423	0.1274
chr7	123737718	123737818	3632548	0	-	0.28	[0,0.28]	chr7	337581	281	INTRON	INTRON	WASL	ENSG00000106299.8	ENST00000223023.5	protein_coding	protein_coding	protein_coding	protein_coding	7	81	2	1.50357	1.7631100000000002	2.02265	0.0449017	0.0436989	0.162255	0.149888
chr3	128483359	128483459	1813575	0	-	0.36	(0.35,0.378]	chr3	182218	1	SS5_PROX	SS5_PROX:INTRON	GATA2	ENSG00000179348.13	ENST00000341105.7:ENST00000696466.1:ENST00000430265.6:ENST00000487848.5	protein_coding	protein_coding	protein_coding	protein_coding	11	101	2	1.54885	1.76307	1.97729	0.0295814	0.00688871	0.128519	0.0750118
chr22	16789396	16789496	7546293	0	-	0.29	(0.28,0.32]	chr22	771315	46	INTRON	INTRON	XKR3	ENSG00000172967.8	ENST00000331428.5:ENST00000684488.1	protein_coding	protein_coding	protein_coding	protein_coding	5	56	2	1.56134	1.763045	1.96475	0.0740624	0.0428385	0.191153	0.162255
chr12	122134604	122134699	5240434	0	+	0.505263	(0.476,0.515]	chr12	497537	4	UTR5	UTR5:EXON_MRNA:INTRON	MLXIP	ENSG00000175727.14	ENST00000319080.12:ENST00000538698.5:ENST00000541750.1:ENST00000366272.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	74	2	1.50655	1.7630400000000002	2.01953	0.0316424	0.0163662	0.13151	0.109586
chr17	22101899	22101999	6578682	0	+	0.24	[0,0.28]	chr17	639556	106	INTRON	INTRON	UBBP4	ENSG00000263563.7	ENST00000648259.1:ENST00000688301.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	5	63	2	1.71402	1.76301	1.812	0.0729149	0.047753	0.189235	0.170327
chr4	1983060	1983146	2095774	0	-	0.244186	[0,0.28]	chr4	207349	5	UTR3	UTR3:EXON_MRNA	NELFA	ENSG00000185049.16	ENST00000542778.5:ENST00000382882.9:ENST00000467661.5:ENST00000333877.8:ENST00000416258.5:ENST00000463820.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	63	2	1.71402	1.76301	1.812	0.0729149	0.047753	0.189235	0.170327
chr8	23022181	23022279	3923464	0	-	0.561224	(0.515,0.57]	chr8	359060	22	UTR3	UTR3:EXON_MRNA	TNFRSF10B	ENSG00000120889.13	ENST00000276431.9:ENST00000523752.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	16	105	2	1.04747	1.76301	2.47855	0.0682722	5.02001e-4	0.184298	0.020217099999999998
chr12	103931924	103932012	5208337	0	+	0.363636	(0.35,0.378]	chr12	492908	3	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HSP90B1	ENSG00000166598.16	ENST00000549334.5:ENST00000550595.2:ENST00000681861.1:ENST00000680899.1:ENST00000680391.1:ENST00000680653.1:ENST00000679779.1:ENST00000680281.1:ENST00000681949.1:ENST00000680989.1:ENST00000614327.2:ENST00000680762.1:ENST00000680663.1:ENST00000681172.1:ENST00000640977.2:ENST00000540297.7:ENST00000681941.1:ENST00000548622.1:ENST00000681910.1:ENST00000681704.1:ENST00000679377.1:ENST00000299767.10:ENST00000681174.1:ENST00000680370.1:ENST00000679538.1:ENST00000681698.1:ENST00000680242.1:ENST00000548462.5:ENST00000680316.1:ENST00000679861.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	94	2	1.44934	1.7626	2.07586	0.0658369	0.00297794	0.181518	0.0502007
chr3	158124790	158124890	1538423	0	+	0.39	(0.378,0.408]	chr3	160262	4	INTRON	INTRON	RSRC1	ENSG00000174891.14	ENST00000480820.5:ENST00000494002.5:ENST00000295930.7:ENST00000471994.5:ENST00000683733.1:ENST00000682221.1:ENST00000683831.1:ENST00000683516.1:ENST00000482822.3:ENST00000476899.6:ENST00000464171.5:ENST00000611884.5:ENST00000682164.1:ENST00000684604.1:ENST00000683899.1:ENST00000682500.1:ENST00000684683.1:ENST00000684512.1:ENST00000683394.1:ENST00000684156.1:ENST00000312179.10:ENST00000475278.6:ENST00000480119.5:ENST00000468344.5:ENST00000471911.5:ENST00000683137.1:ENST00000477788.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	62	2	1.63458	1.76255	1.89052	0.0573057	0.0148147	0.167723	0.106702
chr8	17932914	17933014	3707826	0	+	0.4	(0.378,0.408]	chr8	343815	51	INTRON	INTRON	PCM1	ENSG00000078674.19	ENST00000518930.1:ENST00000325083.13:ENST00000517730.5:ENST00000518537.5:ENST00000518936.5:ENST00000523055.5:ENST00000519253.5:ENST00000524226.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	62	2	1.63458	1.76255	1.89052	0.0573057	0.0148147	0.167723	0.106702
chr2	69879499	69879599	805259	0	+	0.3	(0.28,0.32]	chr2	89863	6	UTR3	UTR3:EXON_MRNA	GMCL1	ENSG00000087338.5	ENST00000282570.4	protein_coding	protein_coding	protein_coding	protein_coding	6	63	2	1.56118	1.76247	1.96376	0.0480066	0.0467152	0.1676	0.153019
chr3	12645077	12645177	1617241	0	-	0.32	(0.28,0.32]	chr3	166990	155	INTRON	INTRON	RAF1	ENSG00000132155.14	ENST00000688543.1:ENST00000685348.1:ENST00000251849.9:ENST00000442415.7:ENST00000688444.1:ENST00000692093.1:ENST00000691724.1:ENST00000423275.6:ENST00000687326.1:ENST00000688803.1:ENST00000689876.1:ENST00000686455.1:ENST00000684903.1:ENST00000693312.1:ENST00000690460.1:ENST00000692773.1:ENST00000688625.1:ENST00000693664.1:ENST00000686762.1:ENST00000692311.1:ENST00000692558.1:ENST00000691779.1:ENST00000685738.1:ENST00000690397.1:ENST00000687923.1:ENST00000688269.1:ENST00000693705.1:ENST00000689097.1:ENST00000691899.1:ENST00000689914.1:ENST00000690625.1:ENST00000689389.1:ENST00000687257.1:ENST00000686409.1:ENST00000685653.1:ENST00000689540.1:ENST00000691396.1:ENST00000685437.1:ENST00000689418.1:ENST00000687940.1:ENST00000689481.1:ENST00000491290.2:ENST00000686479.1:ENST00000689033.1:ENST00000692777.1:ENST00000689226.1:ENST00000691718.1:ENST00000692959.1:ENST00000685740.1:ENST00000688753.1:ENST00000688779.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	63	2	1.56118	1.76247	1.96376	0.0480066	0.0467152	0.1676	0.153019
chr1	246553490	246553589	680857	0	-	0.525253	(0.515,0.57]	chr1	79810	18	INTRON	INTRON	TFB2M	ENSG00000162851.8	ENST00000366514.5	protein_coding	protein_coding	protein_coding	protein_coding	5	37	2	1.7074	1.76242	1.81744	0.0779432	0.031028	0.196685	0.143457
chr11	31499194	31499294	4939137	0	-	0.52	(0.515,0.57]	chr11	462601	106	INTRON	INTRON	IMMP1L	ENSG00000148950.11	ENST00000532287.6:ENST00000534812.5:ENST00000526776.5:ENST00000278200.5:ENST00000648582.1:ENST00000533642.1:ENST00000527184.5:ENST00000528161.5:ENST00000532624.5:ENST00000529749.5:ENST00000530023.5:ENST00000531693.1:ENST00000532668.1:ENST00000533921.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	37	2	1.7074	1.76242	1.81744	0.0779432	0.031028	0.196685	0.143457
chr9	131495339	131495439	4218019	0	+	0.55	(0.515,0.57]	chr9	386886	2	SS3_PROX	SS3_PROX:INTRON	PRRC2B	ENSG00000288701.1	ENST00000684596.1:ENST00000683519.1:ENST00000682501.1:ENST00000682662.1:ENST00000683161.1:ENST00000684112.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	37	2	1.7074	1.76242	1.81744	0.0779432	0.031028	0.196685	0.143457
chr11	85974407	85974507	5013864	0	-	0.36	(0.35,0.378]	chr11	472907	3	SS5_PROX	SS5_PROX:INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000530692.5:ENST00000526548.3:ENST00000630913.2:ENST00000529760.5:ENST00000528398.5:ENST00000532603.5:ENST00000356360.9:ENST00000529016.5:ENST00000526961.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	66	2	1.49446	1.762365	2.03027	0.054297	0.0185322	0.182243	0.108861
chr6	17673314	17673413	3065872	0	-	0.414141	(0.408,0.44]	chr6	284852	34	INTRON	INTRON	NUP153	ENSG00000124789.12	ENST00000613258.4:ENST00000537253.5:ENST00000262077.3	protein_coding	protein_coding	protein_coding	protein_coding	11	93	2	1.54151	1.76235	1.98319	0.0368312	0.0042785	0.138959	0.0598356
chr11	65439049	65439149	4805933	0	+	0.38	(0.378,0.408]	chr11	446554	164	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	25	211	2	1.68627	1.7621099999999998	1.83795	0.00828152	0.00144476	0.0774402	0.0348546
chr7	87159466	87159565	3345693	0	+	0.343434	(0.32,0.35]	chr7	311631	36	INTRON	INTRON	DMTF1	ENSG00000135164.19	ENST00000413276.6:ENST00000447863.5:ENST00000579677.5:ENST00000425406.5:ENST00000446796.6:ENST00000420131.5:ENST00000414630.6:ENST00000547146.6:ENST00000579850.5:ENST00000453049.5:ENST00000331242.12:ENST00000430405.7:ENST00000449088.7:ENST00000448598.5:ENST00000428819.5:ENST00000432937.6:ENST00000584619.5:ENST00000432366.6:ENST00000423590.6:ENST00000394703.9:ENST00000584457.5:ENST00000580710.5:ENST00000579592.5:ENST00000434534.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	89	2	1.72098	1.7620200000000001	1.80306	0.0246393	0.0192903	0.12011	0.119831
chr12	93392617	93392716	5189088	0	+	0.353535	(0.35,0.378]	chr12	490794	71	INTRON	INTRON	NUDT4	ENSG00000173598.14	ENST00000337179.9:ENST00000415493.7:ENST00000549992.5:ENST00000550056.5:ENST00000547014.5:ENST00000548662.5:ENST00000546925.1	protein_coding	protein_coding	protein_coding	protein_coding	16	138	2	1.69699	1.761735	1.82648	0.0150408	0.00536975	0.0994339	0.0663866
chr5	131793909	131794009	2720714	0	-	0.33	(0.32,0.35]	chr5	255730	489	INTRON	INTRON	FNIP1	ENSG00000217128.13	ENST00000510461.6:ENST00000307954.12:ENST00000307968.11:ENST00000511848.1	protein_coding	protein_coding	protein_coding	protein_coding	7	55	2	1.29156	1.76169	2.23182	0.068598	0.060443	0.191687	0.184298
chr12	54335621	54335721	5143802	0	+	0.36	(0.35,0.378]	chr12	485588	96	INTRON	INTRON	COPZ1	ENSG00000111481.10	ENST00000552848.5:ENST00000548076.5:ENST00000553009.5:ENST00000549043.5:ENST00000262061.7:ENST00000552218.5:ENST00000551962.5:ENST00000550171.5:ENST00000455864.6:ENST00000552362.5:ENST00000553231.5:ENST00000550027.5:ENST00000551412.5:ENST00000549116.5:ENST00000551779.5:ENST00000548281.5:ENST00000548753.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	47	2	1.75561	1.76167	1.76773	0.0739399	0.0373863	0.190914	0.155878
chr7	128761994	128762094	3408611	0	+	0.35	(0.32,0.35]	chr7	318457	5	INTRON	INTRON	CALU	ENSG00000128595.17	ENST00000535011.6:ENST00000542996.6:ENST00000249364.9:ENST00000449187.6:ENST00000479257.5:ENST00000493278.1	protein_coding	protein_coding	protein_coding	protein_coding	7	70	2	1.50185	1.76159	2.02133	0.0589483	0.017146	0.167915	0.111072
chr8	43066983	43067081	3745957	0	+	0.265306	[0,0.28]	chr8	348528	24	INTRON	INTRON	FNTA	ENSG00000168522.13	ENST00000533559.5:ENST00000526755.5:ENST00000302279.8:ENST00000527153.5:ENST00000533383.5:ENST00000533998.5:ENST00000524546.5:ENST00000531266.5:ENST00000533368.1:ENST00000525699.5:ENST00000529687.5:ENST00000533336.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	63	2	1.62313	1.761555	1.89998	0.0605286	0.0599553	0.191883	0.169548
chr20	2937082	2937182	7223200	0	+	0.37	(0.35,0.378]	chr20	733951	134	INTRON	INTRON	PTPRA	ENSG00000132670.21	ENST00000455631.5:ENST00000399903.7:ENST00000216877.10:ENST00000431048.5:ENST00000318266.9:ENST00000430705.5:ENST00000356147.3	protein_coding	protein_coding	protein_coding	protein_coding	5	47	2	1.58862	1.76147	1.93432	0.0615516	0.0481438	0.193423	0.153019
chr9	91911875	91911974	4284884	0	-	0.353535	(0.35,0.378]	chr9	393921	248	INTRON	INTRON	ROR2	ENSG00000169071.15	ENST00000375715.5:ENST00000375708.4:ENST00000495386.5:ENST00000546883.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	47	2	1.58862	1.76147	1.93432	0.0615516	0.0481438	0.193423	0.153019
chr22	20936839	20936938	7480712	0	+	0.444444	(0.44,0.476]	chr22	763096	22	INTRON	INTRON	CRKL	ENSG00000099942.13	ENST00000354336.8:ENST00000411769.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	17	136	2	1.38575	1.761425	2.1371000000000002	0.0230263	0.00205988	0.118056	0.0420839
chr5	111499489	111499588	2702664	0	-	0.454545	(0.44,0.476]	chr5	254388	36	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	STARD4	ENSG00000164211.13	ENST00000296632.8:ENST00000512160.5:ENST00000511137.5:ENST00000502931.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	43	342	2	1.66123	1.76124	1.86125	0.00166329	0.00152292	0.0377701	0.0353936
chr7	107434928	107435028	3611734	0	-	0.4	(0.378,0.408]	chr7	336694	219	INTRON	INTRON	COG5	ENSG00000164597.15	ENST00000297135.9:ENST00000347053.8:ENST00000393603.7:ENST00000484237.5:ENST00000475638.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	63	2	1.45712	1.761235	2.06535	0.0597975	0.0159849	0.189982	0.101453
chr17	82546062	82546162	6692868	0	+	0.39	(0.378,0.408]	chr17	654627	254	INTRON	INTRON	FOXK2	ENSG00000141568.21	ENST00000473637.6:ENST00000335255.10:ENST00000527313.6:ENST00000570585.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	97	2	1.57136	1.76118	1.951	0.0233757	0.00907019	0.128037	0.0807886
chr11	3697792	3697891	4894147	0	-	0.282828	(0.28,0.32]	chr11	458782	6	INTRON	INTRON	NUP98	ENSG00000110713.17	ENST00000359171.8:ENST00000324932.12:ENST00000650171.1:ENST00000355260.7:ENST00000429801.5:ENST00000529063.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	14	150	2	1.58084	1.761145	1.94145	0.0248774	0.00468258	0.12011	0.0631419
chrX	44929084	44929184	7649161	0	+	0.47	(0.44,0.476]	chrX	782726	547	INTRON	INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000675440.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000621147.5:ENST00000475233.1:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	66	2	1.30125	1.76114	2.22103	0.0734119	0.00776319	0.190171	0.0787356
chr1	29060021	29060121	60429	0	+	0.32	(0.28,0.32]	chr1	7721	2	SS3_PROX	SS3_PROX:INTRON	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000647918.1:ENST00000646800.1:ENST00000644342.1:ENST00000646189.1:ENST00000482464.6:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000646260.1:ENST00000373798.5:ENST00000644600.1:ENST00000649674.1:ENST00000643173.1:ENST00000343067.9:ENST00000644780.1:ENST00000650265.1:ENST00000648181.1:ENST00000643604.1:ENST00000648891.1:ENST00000373797.2:ENST00000349460.9:ENST00000645184.1:ENST00000645111.1:ENST00000643302.1:ENST00000642643.1:ENST00000636666.1:ENST00000644848.1:ENST00000644470.1:ENST00000646871.1:ENST00000488277.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	15	131	2	1.18651	1.76112	2.33573	0.0432276	0.00764237	0.162255	0.0752681
chr6	152981564	152981663	3249661	0	-	0.363636	(0.35,0.378]	chr6	301947	56	INTRON	INTRON	FBXO5	ENSG00000112029.10	ENST00000367241.3:ENST00000229758.8	protein_coding	protein_coding	protein_coding	protein_coding	11	100	2	1.50831	1.7610450000000002	2.01378	0.0277212	0.00952336	0.123904	0.0863913
chr5	146148562	146148661	2747056	0	-	0.333333	(0.32,0.35]	chr5	258826	40	EXON_MRNA	EXON_MRNA:INTRON	LARS1	ENSG00000133706.19	ENST00000674174.1:ENST00000674170.1:ENST00000674479.1:ENST00000674309.1:ENST00000674218.1:ENST00000674467.1:ENST00000674290.1:ENST00000674447.1:ENST00000674270.1:ENST00000674383.1:ENST00000674191.1:ENST00000674158.1:ENST00000394434.7:ENST00000674398.1:ENST00000674277.1:ENST00000274562.13:ENST00000510191.5:ENST00000674310.1:ENST00000512412.2:ENST00000508667.5:ENST00000507095.1:ENST00000674417.1:ENST00000674450.1:ENST00000674412.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	12	104	2	1.39196	1.76088	2.1298	0.0269614	0.0141189	0.135436	0.0959618
chr1	162590911	162591011	238618	0	+	0.47	(0.44,0.476]	chr1	28739	4	SS5_PROX	SS5_PROX:INTRON	UAP1	ENSG00000117143.14	ENST00000367925.6:ENST00000367926.9	protein_coding	protein_coding	protein_coding	protein_coding	15	123	2	1.51294	1.760775	2.00861	0.0181562	0.00380912	0.10754	0.0562562
chr6	27126071	27126158	3072297	0	-	0.310345	(0.28,0.32]	chr6	285570	3	UTR3	UTR3:EXON_MRNA	H2BC11	ENSG00000124635.9	ENST00000607124.1:ENST00000606923.1	protein_coding	protein_coding	protein_coding	protein_coding	23	242	2	1.70897	1.7607650000000001	1.81256	0.0101065	0.0029066	0.0850389	0.0494641
chr7	128306425	128306524	3634867	0	-	0.393939	(0.378,0.408]	chr7	337817	89	UTR3	UTR3:EXON_MRNA	RBM28	ENSG00000106344.8	ENST00000223073.6	protein_coding	protein_coding	protein_coding	protein_coding	6	54	2	1.68393	1.760665	1.8374	0.0503034	0.0299228	0.156383	0.142135
chr3	177137740	177137840	1871848	0	-	0.45	(0.44,0.476]	chr3	187422	16	INTRON	INTRON	TBL1XR1	ENSG00000177565.18	ENST00000457928.7:ENST00000430069.5:ENST00000673974.1:ENST00000352800.10:ENST00000422442.6:ENST00000428970.5:ENST00000424913.5:ENST00000437738.5:ENST00000431421.5:ENST00000635794.1:ENST00000630796.2:ENST00000450267.5:ENST00000630833.2:ENST00000431674.5:ENST00000422066.5:ENST00000443315.5:ENST00000627825.2:ENST00000427349.5:ENST00000413084.5:ENST00000637137.1:ENST00000491623.2:ENST00000637544.1:ENST00000636187.1:ENST00000636912.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	50	2	1.75023	1.7606199999999999	1.77101	0.0693975	0.0240995	0.184298	0.129929
chr1	508188	508288	355644	0	-	0.44	(0.408,0.44]	chr1	41008	27	INTRON	INTRON	ENSG00000237094	ENSG00000237094.12	ENST00000641303.1:ENST00000641063.1:ENST00000641049.1:ENST00000642124.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	7	60	2	1.53812	1.76061	1.9831	0.0501609	0.018491	0.156383	0.116694
chr5	139576489	139576589	2500655	0	+	0.45	(0.44,0.476]	chr5	239026	137	INTRON	INTRON	UBE2D2	ENSG00000131508.16	ENST00000511725.5:ENST00000505007.5:ENST00000398733.8:ENST00000510470.1:ENST00000398734.8:ENST00000505548.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	68	2	1.47433	1.760535	2.04674	0.0595438	0.00803423	0.16883600000000001	0.0803474
chr10	68064194	68064294	4637835	0	-	0.49	(0.476,0.515]	chr10	426436	193	INTRON	INTRON	HERC4	ENSG00000148634.16	ENST00000373700.9:ENST00000412272.6:ENST00000395198.7:ENST00000473533.6:ENST00000427635.6:ENST00000513996.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	59	2	1.50151	1.76052	2.01953	0.054954	0.0163662	0.165463	0.109586
chr7	139377553	139377653	3437772	0	+	0.47	(0.44,0.476]	chr7	320340	10	INTRON	INTRON	LUC7L2:FMC1-LUC7L2	ENSG00000146963.18:ENSG00000269955.2	ENST00000541170.7:ENST00000541515.3:ENST00000608368.5:ENST00000619796.4:ENST00000354926.9:ENST00000456182.5:ENST00000263545.7:ENST00000463912.5:ENST00000498518.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	90	2	1.72421	1.760475	1.79674	0.0285163	0.00717907	0.12666	0.0756118
chr7	120989335	120989430	3393641	0	+	0.336842	(0.32,0.35]	chr7	317663	4	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CPED1	ENSG00000106034.18	ENST00000340646.9:ENST00000310396.10:ENST00000428526.5:ENST00000495036.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	14	132	2	1.41592	1.7602700000000002	2.10462	0.0246865	0.00571086	0.131869	0.0657377
chr21	37458105	37458205	7407144	0	+	0.4	(0.378,0.408]	chr21	754898	14	INTRON	INTRON	DYRK1A	ENSG00000157540.22	ENST00000646523.1:ENST00000647425.1:ENST00000647188.2:ENST00000647504.1:ENST00000644942.1:ENST00000338785.8:ENST00000643624.1:ENST00000643551.1:ENST00000426672.6:ENST00000398960.7:ENST00000646548.1:ENST00000645424.1:ENST00000643854.1:ENST00000455097.6:ENST00000642309.1:ENST00000645774.1:ENST00000398956.2	protein_coding	protein_coding	protein_coding	protein_coding	6	52	2	1.76	1.76016	1.76032	0.0721577	0.023484	0.187433	0.128531
chr9	4831274	4831373	4095252	0	+	0.50505	(0.476,0.515]	chr9	373168	39	INTRON	INTRON	RCL1	ENSG00000120158.12	ENST00000381750.9:ENST00000442869.5:ENST00000473230.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	80	2	1.72827	1.76007	1.79187	0.0362169	0.00969651	0.138959	0.0874888
chr13	110973751	110973850	5544125	0	+	0.363636	(0.35,0.378]	chr13	529715	73	INTRON	INTRON	LINC00431	ENSG00000225760.2	ENST00000440735.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	7	65	2	1.64283	1.7600449999999999	1.87726	0.034896	0.0297629	0.148998	0.12908
chr2	32305724	32305822	730666	0	+	0.316327	(0.28,0.32]	chr2	84266	2	UTR3	UTR3:EXON_MRNA:INTRON	YIPF4	ENSG00000119820.11	ENST00000238831.9:ENST00000437765.1:ENST00000441084.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	85	2	1.46548	1.76003	2.05458	0.0381508	0.0299501	0.142135	0.141764
chr3	138789076	138789176	1831042	0	-	0.43	(0.408,0.44]	chr3	184056	186	INTRON	INTRON	PIK3CB	ENSG00000051382.9	ENST00000674063.1:ENST00000477593.5:ENST00000462898.5:ENST00000483968.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	44	2	1.58763	1.76003	1.93243	0.0639217	0.0441194	0.177824	0.162255
chrX	24762044	24762143	7632397	0	+	0.424242	(0.408,0.44]	chrX	781725	127	INTRON	INTRON	POLA1	ENSG00000101868.13	ENST00000672178.1:ENST00000379068.8:ENST00000379059.7:ENST00000611764.2:ENST00000480125.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	44	2	1.58763	1.76003	1.93243	0.0639217	0.0441194	0.177824	0.162255
chr1	95118882	95118979	166579	0	+	0.463918	(0.44,0.476]	chr1	18089	4	INTRON	INTRON	TLCD4:TLCD4-RWDD3	ENSG00000152078.10:ENSG00000271092.5	ENST00000370203.9:ENST00000456991.5:ENST00000604534.5:ENST00000455656.1	protein_coding	protein_coding	protein_coding	protein_coding	12	88	2	1.33659	1.760015	2.18344	0.0308657	0.0102102	0.143385	0.0850389
chr1	65324027	65324126	136235	0	+	0.393939	(0.378,0.408]	chr1	15352	137	INTRON	INTRON	DNAJC6	ENSG00000116675.16	ENST00000463018.5:ENST00000494710.6:ENST00000263441.11:ENST00000395325.7:ENST00000483402.1:ENST00000371069.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	63	2	1.46085	1.75991	2.05897	0.0343503	0.0339294	0.147468	0.134508
chr2	241679631	241679728	1349364	0	-	0.443299	(0.44,0.476]	chr2	141793	6	INTRON	INTRON	DTYMK	ENSG00000168393.13	ENST00000400770.6:ENST00000305784.7:ENST00000445261.5:ENST00000432348.5:ENST00000420144.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	89	2	1.68502	1.759805	1.83459	0.0198542	0.0115528	0.109608	0.0962115
chr16	16577390	16577490	6311636	0	+	0.48	(0.476,0.515]	chr16	604098	774	INTRON	INTRON	ENSG00000260126	ENSG00000260126.2	ENST00000567465.2	lncRNA	lncRNA	lncRNA	lncRNA	5	43	2	1.52615	1.75978	1.99341	0.0739267	0.037389	0.190914	0.155878
chr17	30133127	30133227	6587553	0	+	0.51	(0.476,0.515]	chr17	640563	50	INTRON	INTRON	NSRP1	ENSG00000126653.18	ENST00000540900.7:ENST00000612959.4:ENST00000247026.10:ENST00000577289.6:ENST00000584154.5:ENST00000394826.8:ENST00000475652.5:ENST00000584317.5:ENST00000583301.5:ENST00000585881.5:ENST00000467446.6:ENST00000580103.6:ENST00000581048.5:ENST00000588614.1:ENST00000589608.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	43	2	1.52615	1.75978	1.99341	0.0739267	0.037389	0.190914	0.155878
chr3	17734843	17734943	1630356	0	-	0.48	(0.476,0.515]	chr3	168275	326	INTRON	INTRON	TBC1D5	ENSG00000131374.15	ENST00000253692.11:ENST00000696125.1:ENST00000414318.2:ENST00000429383.8:ENST00000415814.6:ENST00000452492.6:ENST00000412981.5:ENST00000428355.5:ENST00000425944.5:ENST00000430169.5:ENST00000445294.5:ENST00000414349.5:ENST00000443499.6:ENST00000444756.5:ENST00000497531.5:ENST00000443386.5:ENST00000446863.5:ENST00000444471.5:ENST00000481396.5:ENST00000423331.6:ENST00000485432.1:ENST00000471679.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	43	2	1.52615	1.75978	1.99341	0.0739267	0.037389	0.190914	0.155878
chr17	30732385	30732485	6589808	0	+	0.51	(0.476,0.515]	chr17	640842	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SUZ12P1	ENSG00000264538.7	ENST00000578070.5:ENST00000579526.5:ENST00000690405.1:ENST00000497969.6:ENST00000578195.6	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	9	75	2	1.44826	1.75971	2.07116	0.0482164	0.00731321	0.153146	0.076234
chr5	43481464	43481561	2614816	0	-	0.298969	(0.28,0.32]	chr5	248565	11	INTRON	INTRON	TMEM267	ENSG00000151881.15	ENST00000397080.8:ENST00000500337.6:ENST00000512085.5:ENST00000511525.1:ENST00000510130.1:ENST00000506860.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	93	2	1.31424	1.7596950000000002	2.20515	0.0580847	0.011946	0.188651	0.0899583
chr5	65938496	65938595	2370963	0	+	0.464646	(0.44,0.476]	chr5	228472	113	INTRON	INTRON	ERBIN	ENSG00000112851.15	ENST00000380943.6:ENST00000507490.1:ENST00000416865.6:ENST00000380935.5:ENST00000284037.10:ENST00000380938.6:ENST00000511297.5:ENST00000506030.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	19	151	2	1.48296	1.75961	2.03626	0.0116919	0.00305792	0.0962115	0.0494118
chr2	235531537	235531637	1041712	0	+	0.44	(0.408,0.44]	chr2	111222	66	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1:ENST00000402604.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	17	141	2	1.69275	1.7595800000000001	1.82641	0.0107729	0.003836	0.0868048	0.0562562
chr8	23533515	23533615	3715143	0	+	0.47	(0.44,0.476]	chr8	345217	17	INTRON	INTRON	SLC25A37	ENSG00000147454.14	ENST00000519973.6:ENST00000290075.10:ENST00000417331.6:ENST00000518881.5:ENST00000520654.1:ENST00000523930.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	49	2	1.49356	1.75957	2.02558	0.0537505	0.0363567	0.180803	0.138959
chr5	34937930	34938030	2337446	0	+	0.46	(0.44,0.476]	chr5	225750	3	SS5_PROX	SS5_PROX:INTRON	DNAJC21	ENSG00000168724.17	ENST00000648817.1:ENST00000382021.2:ENST00000642851.1:ENST00000642675.1:ENST00000644357.1:ENST00000642285.1:ENST00000646714.1:ENST00000514237.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	49	2	1.43625	1.7595100000000001	2.08277	0.063142	0.0309998	0.197183	0.13151
chr9	91294321	91294421	4280544	0	-	0.47	(0.44,0.476]	chr9	393785	730	INTRON	INTRON	AUH	ENSG00000148090.12	ENST00000303617.5:ENST00000375731.9	protein_coding	protein_coding	protein_coding	protein_coding	6	49	2	1.43625	1.7595100000000001	2.08277	0.063142	0.0309998	0.197183	0.13151
chr20	50909199	50909299	7355655	0	-	0.49	(0.476,0.515]	chr20	750096	3	SS5_PROX	SS5_PROX:INTRON	ADNP	ENSG00000101126.18	ENST00000621696.5:ENST00000673732.1:ENST00000396029.8:ENST00000644386.1:ENST00000396032.8:ENST00000349014.8:ENST00000645081.1:ENST00000642364.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	59	2	1.58842	1.7595049999999999	1.93059	0.0406588	0.023762	0.161534	0.118822
chr19	54104720	54104814	7098526	0	+	0.404255	(0.378,0.408]	chr19	711798	12	INTRON	INTRON	NDUFA3	ENSG00000170906.16	ENST00000417903.5:ENST00000419113.5:ENST00000391762.5:ENST00000485876.6:ENST00000451517.5:ENST00000471292.5:ENST00000391764.7:ENST00000391763.3:ENST00000484103.1:ENST00000303553.5:ENST00000422029.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	62	2	1.52219	1.759485	1.99678	0.0531838	0.0177959	0.162538	0.113452
chr7	151094337	151094436	3448430	0	+	0.545455	(0.515,0.57]	chr7	322165	34	INTRON	INTRON	AGAP3	ENSG00000133612.19	ENST00000490097.5:ENST00000463381.5:ENST00000397238.7:ENST00000622464.4:ENST00000479901.5:ENST00000473312.5:ENST00000469901.5:ENST00000476375.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	72	2	1.43219	1.759405	2.08662	0.0483322	0.00375149	0.153415	0.0562562
chr4	78867507	78867607	1982313	0	+	0.26	[0,0.28]	chr4	198529	14	INTRON	INTRON	BMP2K	ENSG00000138756.19	ENST00000389010.7:ENST00000502613.3:ENST00000502871.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	14	172	2	1.58709	1.759265	1.93144	0.0333533	0.0046007	0.134145	0.0624872
chr11	3396488	3396588	4722996	0	+	0.46	(0.44,0.476]	chr11	436998	2	INTRON	INTRON	TSSC2	ENSG00000223756.8	ENST00000685598.1:ENST00000691197.1:ENST00000533775.6:ENST00000690471.1:ENST00000529482.5:ENST00000693396.1:ENST00000685130.1:ENST00000526284.5:ENST00000526488.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	8	70	2	1.54868	1.759215	1.96975	0.0457575	0.0123514	0.164677	0.0914865
chr1	28740698	28740798	58383	0	+	0.45	(0.44,0.476]	chr1	7596	3	SS5_PROX	SS5_PROX:INTRON	YTHDF2	ENSG00000198492.16	ENST00000542507.5:ENST00000474884.5:ENST00000373812.8:ENST00000541996.5:ENST00000478283.5:ENST00000496288.5:ENST00000476976.1:ENST00000475796.5:ENST00000468863.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	66	2	1.34221	1.7592050000000001	2.1762	0.0656882	0.0092251	0.181162	0.0855292
chr1	65314634	65314734	136141	0	+	0.52	(0.515,0.57]	chr1	15352	43	INTRON	INTRON	DNAJC6	ENSG00000116675.16	ENST00000463018.5:ENST00000494710.6:ENST00000263441.11:ENST00000395325.7:ENST00000483402.1:ENST00000371069.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	72	2	1.69047	1.759175	1.82788	0.0195683	0.0123396	0.120063	0.0914341
chr12	116192980	116193079	5424701	0	-	0.606061	(0.57,1]	chr12	518271	118	INTRON	INTRON	MED13L	ENSG00000123066.9	ENST00000281928.9:ENST00000650226.1:ENST00000548743.2:ENST00000647567.1:ENST00000551197.2	protein_coding	protein_coding	protein_coding	protein_coding	6	27	2	1.52865	1.75909	1.98953	0.0730445	0.0182848	0.189414	0.115629
chrX	44890686	44890786	7648777	0	+	0.58	(0.57,1]	chrX	782726	163	INTRON	INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000675440.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000621147.5:ENST00000475233.1:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	27	2	1.52865	1.75909	1.98953	0.0730445	0.0182848	0.189414	0.115629
chr2	10156760	10156859	691071	0	+	0.535354	(0.515,0.57]	chr2	81109	6	INTRON	INTRON	RRM2	ENSG00000171848.16	ENST00000641498.1:ENST00000381786.7	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	13	81	2	1.15282	1.75908	2.36534	0.0529279	0.00404547	0.161904	0.0578376
chr4	75724738	75724819	1974511	0	+	0.62963	(0.57,1]	chr4	197931	3	UTR5	UTR5:EXON_MRNA	USO1	ENSG00000138768.15	ENST00000514213.7:ENST00000264904.8	protein_coding	protein_coding	protein_coding	protein_coding	14	57	2	1.25794	1.75901	2.26008	0.0391392	0.0014773	0.143072	0.0353237
chr7	152430328	152430428	3681237	0	-	0.3	(0.28,0.32]	chr7	341660	713	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000682301.1:ENST00000452749.2:ENST00000680867.1:ENST00000683800.1:ENST00000684278.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	97	2	1.67134	1.75896	1.84658	0.0387947	0.0128582	0.143072	0.0990564
chr21	33450041	33450138	7440671	0	-	0.298969	(0.28,0.32]	chr21	759328	14	UTR3	UTR3:EXON_MRNA	TMEM50B	ENSG00000142188.17	ENST00000420455.5:ENST00000542230.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	107	2	1.45628	1.758925	2.06157	0.0260726	0.0189458	0.133676	0.108861
chr3	6533528	6533628	1356576	0	+	0.35	(0.32,0.35]	chr3	142508	204	INTRON	INTRON	ENSG00000189229	ENSG00000189229.12	ENST00000660158.1:ENST00000433639.1:ENST00000655754.1:ENST00000653839.1:ENST00000662846.1:ENST00000659876.1:ENST00000414438.2:ENST00000658468.1:ENST00000414603.1:ENST00000669512.1:ENST00000667028.1:ENST00000655541.1:ENST00000668643.1:ENST00000671568.1:ENST00000671036.1:ENST00000669798.1:ENST00000655753.1:ENST00000655856.1:ENST00000658398.1:ENST00000661518.1:ENST00000661279.1:ENST00000655495.1:ENST00000663041.1:ENST00000659827.1:ENST00000667716.1:ENST00000662508.1:ENST00000668416.1:ENST00000658133.1:ENST00000659651.1:ENST00000342990.4:ENST00000660054.1:ENST00000671370.1	lncRNA	lncRNA	lncRNA	lncRNA	11	105	2	1.30487	1.7588949999999999	2.21292	0.0550088	0.00445585	0.165463	0.0610799
chr9	4733272	4733372	4228850	0	-	0.3	(0.28,0.32]	chr9	388786	103	INTRON	INTRON	AK3	ENSG00000147853.17	ENST00000381809.8:ENST00000611749.4:ENST00000359883.6:ENST00000447596.4	protein_coding	protein_coding	protein_coding	protein_coding	7	77	2	1.51776	1.75882	1.99988	0.0528371	0.0228757	0.178899	0.118056
chr10	74109556	74109656	4455640	0	+	0.35	(0.32,0.35]	chr10	411496	4	SS5_PROX	SS5_PROX:INTRON	VCL	ENSG00000035403.18	ENST00000623461.3:ENST00000372755.7:ENST00000624354.3:ENST00000211998.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	14	129	2	1.71455	1.7588050000000002	1.80306	0.0246393	0.0062153	0.12011	0.0717416
chr7	99574672	99574771	3362860	0	+	0.424242	(0.408,0.44]	chr7	314159	12	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ZNF655	ENSG00000197343.11	ENST00000252713.9:ENST00000425063.5:ENST00000424881.5:ENST00000394163.2:ENST00000494357.1:ENST00000419215.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	12	96	2	1.25594	1.7587700000000002	2.2616	0.0513299	0.00321416	0.158238	0.0523065
chr8	105483730	105483830	3838899	0	+	0.45	(0.44,0.476]	chr8	354063	321	INTRON	INTRON	ZFPM2	ENSG00000169946.14	ENST00000407775.7:ENST00000520492.5:ENST00000520027.5:ENST00000524235.5:ENST00000511341.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	57	2	1.74644	1.758725	1.77101	0.0693975	0.0165016	0.184298	0.110334
chr22	21577270	21577370	7481800	0	+	0.51	(0.476,0.515]	chr22	763232	85	INTRON	INTRON	UBE2L3	ENSG00000185651.16	ENST00000458578.6:ENST00000545681.2:ENST00000696046.1:ENST00000342192.9:ENST00000496722.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	94	2	1.45724	1.758675	2.06011	0.0231273	0.00869033	0.126939	0.0788605
chr3	9997425	9997524	1362076	0	+	0.454545	(0.44,0.476]	chr3	143402	32	INTRON	INTRON	EMC3-AS1	ENSG00000180385.9	ENST00000692142.1:ENST00000366264.6:ENST00000693066.1:ENST00000326237.3:ENST00000440568.1:ENST00000424904.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	25	205	2	1.66801	1.75858	1.84915	0.00574528	0.00196414	0.0658517	0.0411469
chr11	77814101	77814201	4995912	0	-	0.57	(0.515,0.57]	chr11	472051	4	SS3_PROX	SS3_PROX:INTRON	RSF1	ENSG00000048649.14	ENST00000308488.11:ENST00000528095.5:ENST00000440064.2:ENST00000467567.1:ENST00000530604.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	56	2	1.54678	1.758565	1.97035	0.0324987	0.0195832	0.145164	0.109483
chr2	177214291	177214384	925930	0	+	0.290323	(0.28,0.32]	chr2	101736	5	INTRON	INTRON	HNRNPA3	ENSG00000170144.21	ENST00000392524.6:ENST00000679159.1:ENST00000678111.1:ENST00000678421.1:ENST00000677863.1:ENST00000676681.1:ENST00000676629.1:ENST00000677337.1:ENST00000676488.1:ENST00000677043.1:ENST00000676874.1:ENST00000676762.1:ENST00000411529.6:ENST00000676736.1:ENST00000483137.2:ENST00000677508.1:ENST00000435711.5:ENST00000679328.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	14	146	2	1.29164	1.7585449999999998	2.22545	0.0401321	0.00404105	0.161534	0.0555558
chrX	103680235	103680334	7856515	0	-	0.414141	(0.408,0.44]	chrX	801086	12	INTRON	INTRON	MORF4L2	ENSG00000123562.18	ENST00000360458.5:ENST00000441076.7:ENST00000433176.6:ENST00000451301.5:ENST00000434230.5:ENST00000418819.5:ENST00000442614.5:ENST00000492116.5:ENST00000422355.5:ENST00000474653.5:ENST00000498064.1:ENST00000467755.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	76	2	1.35739	1.758165	2.15894	0.063317	0.00504142	0.177047	0.0646039
chr12	56667930	56668027	5335871	0	-	0.515464	(0.515,0.57]	chr12	510168	13	INTRON	INTRON	PTGES3	ENSG00000110958.16	ENST00000537473.2:ENST00000614328.4:ENST00000262033.11:ENST00000414274.7:ENST00000436399.6:ENST00000448157.6:ENST00000456859.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	37	2	1.56681	1.75813	1.94945	0.064862	0.0414068	0.179394	0.161557
chr3	138810740	138810839	1831260	0	-	0.535354	(0.515,0.57]	chr3	184062	138	INTRON	INTRON	PIK3CB	ENSG00000051382.9	ENST00000674063.1:ENST00000477593.5:ENST00000462898.5:ENST00000483968.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	37	2	1.56681	1.75813	1.94945	0.064862	0.0414068	0.179394	0.161557
chr9	68283630	68283730	4133882	0	+	0.52	(0.515,0.57]	chr9	376827	83	INTRON	INTRON	CBWD3	ENSG00000196873.16	ENST00000618921.4:ENST00000618217.4:ENST00000377342.9:ENST00000621474.4:ENST00000621396.4:ENST00000615061.4:ENST00000360171.11:ENST00000612050.4:ENST00000622755.4:ENST00000377344.6:ENST00000614398.4:ENST00000622817.4:ENST00000619322.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	37	2	1.56681	1.75813	1.94945	0.064862	0.0414068	0.179394	0.161557
chr7	39640003	39640102	3309314	0	+	0.383838	(0.378,0.408]	chr7	307358	152	INTRON	INTRON	RALA	ENSG00000006451.8	ENST00000468201.1:ENST00000005257.7:ENST00000436179.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	51	2	1.51223	1.758105	2.00398	0.051139	0.0393906	0.176696	0.143072
chrX	18339693	18339793	7770909	0	-	0.4	(0.378,0.408]	chrX	794213	52	INTRON	INTRON	SCML2	ENSG00000102098.19	ENST00000251900.9	protein_coding	protein_coding	protein_coding	protein_coding	6	51	2	1.45712	1.758045	2.05897	0.0597975	0.0339294	0.189982	0.134508
chr4	77035983	77036082	1977033	0	+	0.363636	(0.35,0.378]	chr4	198219	16	UTR3	UTR3:EXON_MRNA:INTRON	SEPTIN11	ENSG00000138758.12	ENST00000264893.11:ENST00000505788.5:ENST00000506731.5:ENST00000502401.1:ENST00000513373.1:ENST00000513697.1:ENST00000515671.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	67	2	1.74826	1.757995	1.76773	0.0373863	0.0279529	0.155878	0.124524
chr9	136824159	136824252	4221908	0	+	0.677419	(0.57,1]	chr9	387679	1	INTRON	INTRON	RABL6	ENSG00000196642.19	ENST00000371671.9:ENST00000311502.12:ENST00000484471.6:ENST00000371663.10:ENST00000357466.6:ENST00000464941.5:ENST00000629216.2:ENST00000436380.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	40	2	1.1957	1.757935	2.32017	0.0657373	0.00488159	0.181293	0.0640618
chr22	30025999	30026099	7498983	0	+	0.42	(0.408,0.44]	chr22	765140	3	UTR3	UTR3:EXON_MRNA	MTMR3	ENSG00000100330.16	ENST00000333027.7:ENST00000401950.7:ENST00000323630.9:ENST00000351488.7:ENST00000406629.1	protein_coding	protein_coding	protein_coding	protein_coding	6	52	2	1.53263	1.757865	1.9831	0.0733439	0.018491	0.190051	0.116694
chr7	76350024	76350124	3562452	0	-	0.43	(0.408,0.44]	chr7	331942	194	INTRON	INTRON	YWHAG	ENSG00000170027.7	ENST00000307630.5	protein_coding	protein_coding	protein_coding	protein_coding	6	52	2	1.53263	1.757865	1.9831	0.0733439	0.018491	0.190051	0.116694
chr1	89928007	89928107	160596	0	+	0.4	(0.378,0.408]	chr1	17285	810	INTRON	INTRON	LRRC8D	ENSG00000171492.14	ENST00000525774.5:ENST00000337338.9:ENST00000394593.7:ENST00000532201.5:ENST00000414841.1:ENST00000527156.1:ENST00000441269.2	protein_coding	protein_coding	protein_coding	protein_coding	10	90	2	1.58985	1.75782	1.92579	0.0290335	0.00998976	0.141186	0.0843858
chr21	9112488	9112588	7426464	0	-	0.4	(0.378,0.408]	chr21	757579	242	INTRON	INTRON	TEKT4P2	ENSG00000188681.12	ENST00000690061.1:ENST00000689141.1:ENST00000688310.1:ENST00000687537.1:ENST00000690096.1:ENST00000687888.1:ENST00000690389.1:ENST00000684989.1:ENST00000416067.6:ENST00000693307.1:ENST00000692383.1:ENST00000685666.1:ENST00000688451.1:ENST00000691190.1:ENST00000685532.1:ENST00000687488.1:ENST00000690713.1:ENST00000691834.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	10	81	2	1.52653	1.757705	1.98888	0.0217942	0.0205239	0.123836	0.110999
chr17	28663837	28663937	6584391	0	+	0.54	(0.515,0.57]	chr17	640008	11	INTRON	INTRON	SUPT6H	ENSG00000109111.15	ENST00000347486.8:ENST00000314616.11	protein_coding	protein_coding	protein_coding	protein_coding	10	70	2	1.35483	1.75767	2.16051	0.0486665	0.0046825	0.154097	0.0631419
chr1	32112132	32112232	63494	0	+	0.34	(0.32,0.35]	chr1	8071	36	INTRON	INTRON	KPNA6	ENSG00000025800.14	ENST00000373625.8:ENST00000471599.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	61	2	1.73318	1.757595	1.78201	0.0462868	0.0365003	0.153759	0.150684
chrX	19351807	19351907	7629269	0	+	0.52	(0.515,0.57]	chrX	781174	4	SS5_PROX	SS5_PROX:INTRON	PDHA1	ENSG00000131828.14	ENST00000540249.5:ENST00000696704.1:ENST00000696705.1:ENST00000422285.7:ENST00000423505.6:ENST00000355808.10:ENST00000379805.4:ENST00000417819.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	14	95	2	1.32818	1.757575	2.18697	0.0323878	0.00232379	0.133177	0.0442989
chr7	105078445	105078545	3375283	0	+	0.34	(0.32,0.35]	chr7	315936	2	SS3_PROX	SS3_PROX:INTRON	KMT2E	ENSG00000005483.22	ENST00000257745.9:ENST00000334884.9:ENST00000311117.8:ENST00000478990.5:ENST00000476671.5:ENST00000667857.1:ENST00000482560.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	13	125	2	1.69462	1.757545	1.82047	0.0249051	0.00567197	0.12011	0.0678837
chr11	70435744	70435833	4822010	0	+	0.573034	(0.57,1]	chr11	449686	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CTTN	ENSG00000085733.16	ENST00000346329.7:ENST00000301843.13:ENST00000376561.7:ENST00000393747.3:ENST00000529736.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	21	89	2	1.29692	1.7574750000000001	2.21803	0.0231231	2.8909e-4	0.126939	0.0156667
chr1	234606147	234606245	661456	0	-	0.357143	(0.35,0.378]	chr1	78268	20	UTR3	UTR3:EXON_MRNA	IRF2BP2	ENSG00000168264.11	ENST00000366609.4:ENST00000366610.7	protein_coding	protein_coding	protein_coding	protein_coding	12	86	2	1.19026	1.75745	2.32464	0.0472073	0.0159285	0.168858	0.101453
chr21	10424988	10425087	7368244	0	+	0.444444	(0.44,0.476]	chr21	751975	97	INTRON	INTRON	BAGE2	ENSG00000187172.15	ENST00000474011.5:ENST00000470054.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	6	49	2	1.54868	1.7573500000000002	1.96602	0.0457575	0.0426807	0.164677	0.148082
chr5	65944390	65944490	2371022	0	+	0.47	(0.44,0.476]	chr5	228472	172	INTRON	INTRON	ERBIN	ENSG00000112851.15	ENST00000380943.6:ENST00000507490.1:ENST00000416865.6:ENST00000380935.5:ENST00000284037.10:ENST00000380938.6:ENST00000511297.5:ENST00000506030.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	16	131	2	1.62554	1.7573400000000001	1.88914	0.0212701	0.00227501	0.113328	0.0437013
chr6	169667584	169667683	3266775	0	-	0.50505	(0.476,0.515]	chr6	303226	5	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	WDR27	ENSG00000184465.16	ENST00000448612.6:ENST00000648472.1:ENST00000423258.5:ENST00000647790.1:ENST00000647873.1:ENST00000649303.1:ENST00000647889.1:ENST00000648017.1:ENST00000496752.1:ENST00000650296.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	107	2	1.72827	1.7573050000000001	1.78634	0.0115559	0.00969651	0.0889104	0.0874888
chr2	159722138	159722237	899581	0	+	0.50505	(0.476,0.515]	chr2	99520	60	INTRON	INTRON	MARCHF7	ENSG00000136536.15	ENST00000539065.5:ENST00000259050.8:ENST00000409175.6:ENST00000421037.1:ENST00000473749.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	15	125	2	1.43993	1.75728	2.07463	0.0323113	0.00142485	0.132927	0.0347137
chr21	6491346	6491444	7425386	0	-	0.336735	(0.32,0.35]	chr21	757471	22	EXON_MRNA	EXON_MRNA:INTRON	ENSG00000275895	ENSG00000275895.7	ENST00000610664.5:ENST00000623375.3:ENST00000639996.1:ENST00000620065.4:ENST00000624739.1:ENST00000619610.2:ENST00000636315.1:ENST00000637031.1:ENST00000636177.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	16	156	2	1.47087	1.7572799999999997	2.04369	0.0282825	0.00198928	0.125858	0.0411469
chr2	101299065	101299165	1199453	0	-	0.55	(0.515,0.57]	chr2	128179	35	INTRON	INTRON	RNF149	ENSG00000163162.9	ENST00000424632.5:ENST00000295317.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	42	2	1.56838	1.7571400000000001	1.9459	0.0429089	0.0424458	0.161763	0.148082
chr4	152466856	152466955	2274397	0	-	0.535354	(0.515,0.57]	chr4	221120	147	INTRON	INTRON	FBXW7	ENSG00000109670.16	ENST00000281708.10:ENST00000603548.6:ENST00000604872.6:ENST00000647166.1:ENST00000643834.1:ENST00000642901.1	protein_coding	protein_coding	protein_coding	protein_coding	6	42	2	1.56838	1.7571400000000001	1.9459	0.0429089	0.0424458	0.161763	0.148082
chr1	35603167	35603266	421929	0	-	0.40404	(0.378,0.408]	chr1	50842	38	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	PSMB2	ENSG00000126067.12	ENST00000373237.4:ENST00000621781.4:ENST00000630477.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	32	245	2	1.30281	1.75704	2.21127	0.0126681	8.58314e-4	0.098303	0.0267428
chr8	102352283	102352383	4012147	0	-	0.34	(0.32,0.35]	chr8	367218	48	INTRON	INTRON	UBR5	ENSG00000104517.13	ENST00000520539.6:ENST00000220959.8:ENST00000521922.5	protein_coding	protein_coding	protein_coding	protein_coding	12	104	2	1.41592	1.7569249999999998	2.09793	0.0246865	0.0156788	0.131869	0.101453
chr22	20934344	20934444	7480687	0	+	0.34	(0.32,0.35]	chr22	763095	1	SS5_PROX	SS5_PROX:INTRON	CRKL	ENSG00000099942.13	ENST00000354336.8:ENST00000411769.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	116	2	1.71735	1.75684	1.79633	0.0177594	0.0111024	0.105629	0.0932464
chr11	47471629	47471729	4949556	0	-	0.51	(0.476,0.515]	chr11	464136	58	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	CELF1	ENSG00000149187.19	ENST00000310513.10:ENST00000687097.1:ENST00000395290.6:ENST00000358597.7:ENST00000395292.6:ENST00000361904.7:ENST00000539455.5:ENST00000531165.5:ENST00000532048.5:ENST00000524648.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	82	2	1.75142	1.7567949999999999	1.76217	0.0259024	0.0111778	0.121522	0.0937192
chr17	59840692	59840790	6643742	0	+	0.459184	(0.44,0.476]	chr17	648787	9	UTR3	UTR3:EXON_MRNA	VMP1	ENSG00000062716.13	ENST00000262291.9:ENST00000592790.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	22	152	2	1.08756	1.75677	2.42598	0.0403651	0.00106818	0.161534	0.0300066
chr12	93711763	93711863	5190243	0	+	0.52	(0.515,0.57]	chr12	490910	323	INTRON	INTRON	CRADD	ENSG00000169372.13	ENST00000332896.8:ENST00000549615.5:ENST00000552983.5:ENST00000552033.5:ENST00000551065.5:ENST00000548483.5:ENST00000542893.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	64	2	1.73535	1.75665	1.77795	0.0222234	0.0165373	0.116128	0.110511
chr14	21253146	21253246	5835003	0	-	0.5	(0.476,0.515]	chr14	554459	163	INTRON	INTRON	HNRNPC	ENSG00000092199.19	ENST00000336053.10:ENST00000553300.6:ENST00000554969.5:ENST00000556142.5:ENST00000554455.5:ENST00000430246.6:ENST00000553753.5:ENST00000555309.5:ENST00000555914.5:ENST00000557442.5:ENST00000556628.5:ENST00000556513.5:ENST00000555883.5:ENST00000557201.5:ENST00000556897.5:ENST00000420743.6:ENST00000554539.5:ENST00000554383.5:ENST00000555215.5:ENST00000555137.5:ENST00000554891.5:ENST00000556226.5:ENST00000555176.5:ENST00000553614.5:ENST00000557336.1:ENST00000557768.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	82	2	1.48441	1.75665	2.02889	0.0315624	0.00978617	0.144381	0.0835427
chr14	21251647	21251747	5834988	0	-	0.37	(0.35,0.378]	chr14	554459	148	INTRON	INTRON	HNRNPC	ENSG00000092199.19	ENST00000336053.10:ENST00000553300.6:ENST00000554969.5:ENST00000556142.5:ENST00000554455.5:ENST00000430246.6:ENST00000553753.5:ENST00000555309.5:ENST00000555914.5:ENST00000557442.5:ENST00000556628.5:ENST00000556513.5:ENST00000555883.5:ENST00000557201.5:ENST00000556897.5:ENST00000420743.6:ENST00000554539.5:ENST00000554383.5:ENST00000555215.5:ENST00000555137.5:ENST00000554891.5:ENST00000556226.5:ENST00000555176.5:ENST00000553614.5:ENST00000557336.1:ENST00000557768.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	19	172	2	1.48926	1.7565849999999998	2.02391	0.021707	0.00124069	0.11491	0.0327468
chr1	27478194	27478293	406645	0	-	0.252525	[0,0.28]	chr1	48986	489	INTRON	INTRON	WASF2	ENSG00000158195.11	ENST00000618852.5:ENST00000536657.1	protein_coding	protein_coding	protein_coding	protein_coding	15	164	2	1.32637	1.7564899999999999	2.18661	0.0317933	0.00880381	0.14477	0.0790754
chr18	174606	174706	6854988	0	+	0.44	(0.408,0.44]	chr18	679508	74	INTRON	INTRON	USP14	ENSG00000101557.15	ENST00000582707.5:ENST00000400266.7:ENST00000261601.8:ENST00000578942.5:ENST00000383589.6:ENST00000583119.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	92	2	1.73532	1.756405	1.77749	0.0194186	0.0104439	0.109149	0.0902734
chr1	287867	287967	353474	0	-	0.44	(0.408,0.44]	chr1	40903	187	INTRON	INTRON	ENSG00000228463	ENSG00000228463.10	ENST00000441866.2:ENST00000424587.7	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	6	52	2	1.58026	1.756345	1.93243	0.0444624	0.0441194	0.162255	0.149888
chr17	27097412	27097512	6579799	0	+	0.31	(0.28,0.32]	chr17	639586	6	INTRON	INTRON	ENSG00000285822	ENSG00000285822.1	ENST00000649401.1	lncRNA	lncRNA	lncRNA	lncRNA	14	137	2	1.11992	1.75634	2.39276	0.0630467	0.00331685	0.196976	0.0512081
chr11	14650051	14650151	4743679	0	+	0.37	(0.35,0.378]	chr11	439279	46	INTRON	INTRON	PDE3B	ENSG00000152270.9	ENST00000282096.9:ENST00000455098.2:ENST00000534317.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	16	144	2	1.6421	1.75633	1.87056	0.0173423	0.00335247	0.104152	0.0531277
chr1	203811507	203811607	296839	0	+	0.48	(0.476,0.515]	chr1	34134	81	INTRON	INTRON	ZC3H11A:ZBED6	ENSG00000058673.17:ENSG00000257315.3	ENST00000367210.3:ENST00000453771.5:ENST00000432282.5:ENST00000638800.1:ENST00000367214.5:ENST00000639812.1:ENST00000367212.7:ENST00000332127.8:ENST00000550078.2:ENST00000495527.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	17	123	2	1.45247	1.75629	2.06011	0.012079	0.00869033	0.0962488	0.0788605
chr1	29063182	29063282	60461	0	+	0.41	(0.408,0.44]	chr1	7726	23	INTRON	INTRON	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000647918.1:ENST00000646800.1:ENST00000644342.1:ENST00000646189.1:ENST00000482464.6:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000646260.1:ENST00000373798.5:ENST00000644600.1:ENST00000649674.1:ENST00000643173.1:ENST00000343067.9:ENST00000644780.1:ENST00000650265.1:ENST00000648181.1:ENST00000643604.1:ENST00000648891.1:ENST00000373797.2:ENST00000349460.9:ENST00000645184.1:ENST00000645111.1:ENST00000643302.1:ENST00000642643.1:ENST00000636666.1:ENST00000644848.1:ENST00000644470.1:ENST00000646871.1:ENST00000488277.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	19	141	2	1.45368	1.756275	2.05887	0.0108053	0.0056711	0.0920575	0.0653997
chrX	71575092	71575192	7680393	0	+	0.39	(0.378,0.408]	chrX	786485	14	UTR3	UTR3:EXON_MRNA	OGT	ENSG00000147162.14	ENST00000373719.8	protein_coding	protein_coding	protein_coding	protein_coding	21	155	2	1.30996	1.7562700000000002	2.20258	0.0177138	0.00323986	0.11319	0.0507788
chrX	71420013	71420112	7678785	0	+	0.353535	(0.35,0.378]	chrX	786274	34	INTRON	INTRON	TAF1	ENSG00000147133.17	ENST00000683202.1:ENST00000373790.9:ENST00000423759.6:ENST00000683782.1:ENST00000683668.1:ENST00000276072.9:ENST00000373775.8:ENST00000485087.6:ENST00000437147.8:ENST00000683358.1:ENST00000682124.1:ENST00000461764.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	20	182	2	1.45167	1.756195	2.06072	0.0248399	8.29593e-4	0.12011	0.0263691
chr18	174706	174806	6854989	0	+	0.46	(0.44,0.476]	chr18	679508	75	INTRON	INTRON	USP14	ENSG00000101557.15	ENST00000582707.5:ENST00000400266.7:ENST00000261601.8:ENST00000578942.5:ENST00000383589.6:ENST00000583119.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	82	2	1.60853	1.75614	1.90375	0.020211	0.0156406	0.121301	0.101393
chr16	70557724	70557821	6385499	0	+	0.298969	(0.28,0.32]	chr16	613957	3	INTRON	INTRON	SF3B3	ENSG00000189091.13	ENST00000302516.10	protein_coding	protein_coding	protein_coding	protein_coding	7	77	2	1.60965	1.75607	1.90249	0.0460888	0.0261803	0.150099	0.133676
chr10	70151577	70151677	4640689	0	-	0.34	(0.32,0.35]	chr10	426863	44	UTR3	UTR3:EXON_MRNA	SAR1A	ENSG00000079332.15	ENST00000373242.6:ENST00000373241.9:ENST00000373238.5:ENST00000431664.6	protein_coding	protein_coding	protein_coding	protein_coding	11	109	2	1.662	1.7560699999999998	1.85014	0.0214	0.0119731	0.113959	0.0962115
chr22	21827937	21828037	7560989	0	-	0.37	(0.35,0.378]	chr22	773388	197	INTRON	INTRON	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	7	65	2	1.59505	1.756055	1.91706	0.040425	0.026412	0.161534	0.122506
chr6	15339921	15340021	2823886	0	+	0.38	(0.378,0.408]	chr6	265192	250	INTRON	INTRON	JARID2	ENSG00000008083.14	ENST00000341776.7:ENST00000397311.4	protein_coding	protein_coding	protein_coding	protein_coding	6	51	2	1.5653	1.756055	1.94681	0.0457723	0.043739	0.162255	0.149888
chr4	78807172	78807272	1981693	0	+	0.3	(0.28,0.32]	chr4	198463	301	INTRON	INTRON	BMP2K	ENSG00000138756.19	ENST00000389010.7:ENST00000502613.3:ENST00000502871.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	97	2	1.48049	1.756005	2.03152	0.0503127	0.00983556	0.156383	0.0877296
chr9	130744454	130744554	4214169	0	+	0.38	(0.378,0.408]	chr9	386427	296	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000393293.4	protein_coding	protein_coding	protein_coding	protein_coding	12	109	2	1.49864	1.755885	2.01313	0.0302065	0.00496638	0.142764	0.0615173
chr5	27477229	27477328	2329638	0	+	0.393939	(0.378,0.408]	chr5	225108	18	EXON_LNCRNA	EXON_LNCRNA:SS3_PROX:INTRON	PURPL	ENSG00000250337.8	ENST00000651409.1:ENST00000650981.1:ENST00000655107.1:ENST00000657375.2:ENST00000659077.1:ENST00000653835.1:ENST00000657173.1:ENST00000514844.6:ENST00000657424.1:ENST00000660307.1:ENST00000669423.1:ENST00000659860.1:ENST00000652841.1:ENST00000686605.1:ENST00000690628.1:ENST00000510165.6:ENST00000670554.1:ENST00000665451.1:ENST00000667624.1:ENST00000667420.1:ENST00000660639.1:ENST00000668406.1:ENST00000656783.1:ENST00000512067.5:ENST00000664566.1:ENST00000659489.1:ENST00000667264.1:ENST00000670840.1:ENST00000503107.2:ENST00000688783.1:ENST00000654039.1:ENST00000687778.1:ENST00000505775.5:ENST00000668103.1:ENST00000664501.1:ENST00000661698.1:ENST00000655438.1:ENST00000514255.1	lncRNA	lncRNA	lncRNA	lncRNA	6	54	2	1.73164	1.755875	1.78011	0.0441773	0.0356367	0.151629	0.149888
chr3	160436981	160437080	1849738	0	-	0.363636	(0.35,0.378]	chr3	186017	12	UTR3	UTR3:EXON_MRNA:INTRON	ENSG00000248710:TRIM59	ENSG00000248710.1:ENSG00000213186.8	ENST00000483754.1:ENST00000543469.1:ENST00000309784.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	25	195	2	1.3669	1.7558250000000002	2.14475	0.0119848	0.0030207	0.0962115	0.0493883
chr21	10431971	10432071	7368314	0	+	0.5	(0.476,0.515]	chr21	751975	167	INTRON	INTRON	BAGE2	ENSG00000187172.15	ENST00000474011.5:ENST00000470054.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	20	160	2	1.38013	1.7557900000000002	2.13145	0.0210179	0.00105334	0.112339	0.0299229
chr13	95146195	95146295	5638302	0	-	0.37	(0.35,0.378]	chr13	537056	298	INTRON	INTRON	ABCC4	ENSG00000125257.16	ENST00000645237.2:ENST00000643051.1:ENST00000643842.1:ENST00000646439.1:ENST00000644880.1:ENST00000643816.1:ENST00000536256.3:ENST00000643556.1:ENST00000629385.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	97	2	1.51573	1.755735	1.99574	0.0231884	0.012218	0.127151	0.0910127
chr7	111280494	111280594	3621287	0	-	0.41	(0.408,0.44]	chr7	337093	3166	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	43	2	1.69566	1.75569	1.81572	0.0626779	0.0453922	0.175915	0.164236
chr14	23069120	23069209	5842710	0	-	0.438202	(0.408,0.44]	chr14	555606	2	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ACIN1	ENSG00000100813.15	ENST00000605057.6:ENST00000557515.5:ENST00000262710.5:ENST00000457657.5:ENST00000357481.6:ENST00000338631.10:ENST00000473758.5:ENST00000397341.7:ENST00000555053.5:ENST00000555566.1:ENST00000553721.5:ENST00000557432.2:ENST00000555352.2:ENST00000553501.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	89	2	1.53369	1.75545	1.97721	0.0209854	0.0121661	0.122348	0.0910127
chr19	21444240	21444331	7158644	0	-	0.582418	(0.57,1]	chr19	723684	1	EXON_LNCRNA	EXON_LNCRNA	ENSG00000268119	ENSG00000268119.7	ENST00000596705.5	lncRNA	lncRNA	lncRNA	lncRNA	15	62	2	1.65155	1.7553800000000002	1.85921	0.00752615	0.00662994	0.0773151	0.0703181
chr22	20552338	20552438	7479809	0	+	0.47	(0.44,0.476]	chr22	762986	4	SS3_PROX	SS3_PROX:INTRON	MED15	ENSG00000099917.17	ENST00000445987.5:ENST00000444094.5:ENST00000414658.5:ENST00000433831.5:ENST00000432052.5:ENST00000292733.11:ENST00000263205.11:ENST00000477824.5:ENST00000406969.5:ENST00000382974.6:ENST00000441501.5:ENST00000445189.5:ENST00000451058.5:ENST00000473028.5:ENST00000457322.5:ENST00000428629.5:ENST00000424287.5:ENST00000423862.5:ENST00000420849.5:ENST00000487550.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	59	2	1.38039	1.7551549999999998	2.12992	0.0762718	0.010975	0.195539	0.092635
chr9	130759054	130759154	4214315	0	+	0.33	(0.32,0.35]	chr9	386427	442	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000393293.4	protein_coding	protein_coding	protein_coding	protein_coding	19	176	2	1.07791	1.75515	2.43239	0.0557695	9.33466e-4	0.18407	0.0280484
chr8	102397087	102397187	4012600	0	-	0.43	(0.408,0.44]	chr8	367237	351	INTRON	INTRON	UBR5	ENSG00000104517.13	ENST00000520539.6:ENST00000220959.8:ENST00000521922.5	protein_coding	protein_coding	protein_coding	protein_coding	7	60	2	1.58026	1.75514	1.93002	0.0444624	0.022095	0.149888	0.123903
chr7	12402758	12402858	3485430	0	-	0.32	(0.28,0.32]	chr7	325970	86	INTRON	INTRON	VWDE	ENSG00000146530.15	ENST00000275358.8:ENST00000452576.6:ENST00000521169.5:ENST00000326715.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	88	2	1.72287	1.7551	1.78733	0.0286502	0.0276087	0.139456	0.123904
chr17	45160372	45160469	6782309	0	-	0.309278	(0.28,0.32]	chr17	669035	3	EXON_LNCRNA	EXON_LNCRNA:INTRON	HEXIM2-AS1	ENSG00000224505.3	ENST00000589950.1:ENST00000452741.2:ENST00000692869.1:ENST00000693014.1	lncRNA	lncRNA	lncRNA	lncRNA	6	66	2	1.54521	1.75498	1.96475	0.0548272	0.0428385	0.165463	0.162255
chr1	212868074	212868173	309938	0	+	0.454545	(0.44,0.476]	chr1	35794	32	INTRON	INTRON	FLVCR1	ENSG00000162769.13	ENST00000366971.9:ENST00000419102.1:ENST00000579295.1:ENST00000474693.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	82	2	1.71119	1.75496	1.79873	0.0223888	0.0136438	0.116918	0.101813
chr7	129034456	129034556	3636376	0	-	0.44	(0.408,0.44]	chr7	338142	159	INTRON	INTRON	TNPO3	ENSG00000064419.14	ENST00000627585.2:ENST00000265388.10:ENST00000471234.5:ENST00000482320.5:ENST00000471166.1	protein_coding	protein_coding	protein_coding	protein_coding	19	157	2	1.58342	1.754905	1.92639	0.0121219	0.00233196	0.090965	0.0442989
chr3	47834111	47834210	1420290	0	+	0.535354	(0.515,0.57]	chr3	149238	31	INTRON	INTRON	DHX30	ENSG00000132153.15	ENST00000395745.6:ENST00000445061.6:ENST00000441384.5:ENST00000348968.8:ENST00000446256.6:ENST00000619982.4:ENST00000457607.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	70	2	1.73168	1.754815	1.77795	0.0222234	0.0119342	0.116128	0.0962115
chr16	22492326	22492425	6322528	0	+	0.363636	(0.35,0.378]	chr16	605439	1	INTRON	INTRON	NPIPB5	ENSG00000243716.11	ENST00000415654.5:ENST00000415833.6:ENST00000546168.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	85	2	1.51573	1.75462	1.99351	0.0231884	0.020841	0.127151	0.111648
chr5	62483100	62483196	2363717	0	+	0.354167	(0.35,0.378]	chr5	227905	1	CDS	CDS:EXON_MRNA	IPO11	ENSG00000086200.17	ENST00000424533.5:ENST00000325324.11:ENST00000409296.7:ENST00000507640.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	86	2	1.63191	1.754585	1.87726	0.0297629	0.0149226	0.12908	0.107378
chr19	48749195	48749294	7199254	0	-	0.585859	(0.57,1]	chr19	729870	13	UTR3	UTR3:EXON_MRNA	FUT1	ENSG00000174951.12	ENST00000645652.2	protein_coding	protein_coding	protein_coding	protein_coding	11	47	2	1.70481	1.7545250000000001	1.80424	0.0130959	0.0129439	0.0991015	0.0934992
chr19	28497846	28497946	7166073	0	-	0.38	(0.378,0.408]	chr19	724189	296	INTRON	INTRON	ENSG00000283403:ENSG00000267243	ENSG00000283403.1:ENSG00000267243.6	ENST00000592347.5:ENST00000593065.5	lncRNA	lncRNA	lncRNA	lncRNA	24	178	2	1.23863	1.7544749999999998	2.27032	0.0212651	0.00157451	0.123318	0.0361957
chr7	152308765	152308865	3680010	0	-	0.43	(0.408,0.44]	chr7	341623	220	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000684262.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	90	2	1.73753	1.754425	1.77132	0.0275537	0.00801449	0.123904	0.0802185
chr9	92252365	92252461	4286906	0	-	0.354167	(0.35,0.378]	chr9	394148	6	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	IARS1	ENSG00000196305.19	ENST00000375643.7:ENST00000443024.7:ENST00000447699.7:ENST00000683537.1:ENST00000684726.1:ENST00000683192.1:ENST00000683565.1:ENST00000682756.1:ENST00000684542.1:ENST00000683793.1:ENST00000683817.1:ENST00000682141.1:ENST00000682893.1:ENST00000684557.1:ENST00000498025.2:ENST00000682156.1:ENST00000683017.1:ENST00000682521.1:ENST00000627121.3:ENST00000683469.1:ENST00000683495.1:ENST00000682578.1:ENST00000682533.1:ENST00000472894.2:ENST00000684757.1:ENST00000684445.1:ENST00000683376.1:ENST00000683679.1:ENST00000683119.1:ENST00000684594.1:ENST00000684267.1:ENST00000683477.1:ENST00000684328.1:ENST00000467876.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	22	198	2	1.46138	1.7543250000000001	2.04727	0.0190448	8.93769e-4	0.108861	0.0273458
chr16	75019666	75019766	6389625	0	+	0.33	(0.32,0.35]	chr16	614482	169	INTRON	INTRON	ZNRF1	ENSG00000186187.12	ENST00000335325.9:ENST00000320619.10:ENST00000567962.5:ENST00000566250.5:ENST00000564320.1:ENST00000568511.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	50	2	1.67393	1.754045	1.83416	0.0631198	0.0496128	0.176946	0.174685
chr3	23830096	23830196	1387971	0	+	0.41	(0.408,0.44]	chr3	145385	182	INTRON	INTRON	UBE2E1	ENSG00000170142.12	ENST00000306627.8:ENST00000346855.7:ENST00000495141.5:ENST00000442670.5:ENST00000424381.5:ENST00000467766.5:ENST00000475680.5:ENST00000452012.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	66	2	1.54273	1.754035	1.96534	0.0337312	0.0216499	0.146709	0.11491
chr1	100123888	100123988	515776	0	-	0.42	(0.408,0.44]	chr1	60496	2	INTRON	INTRON	SASS6	ENSG00000156876.10	ENST00000462159.1:ENST00000287482.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	17	141	2	1.52464	1.75393	1.98322	0.0205892	0.00173854	0.110999	0.038529
chr20	35713507	35713601	7336253	0	-	0.553191	(0.515,0.57]	chr20	747429	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RBM39	ENSG00000131051.24	ENST00000253363.11:ENST00000639702.1:ENST00000656873.1:ENST00000463004.5:ENST00000361162.10:ENST00000461283.5:ENST00000403542.6:ENST00000338163.10:ENST00000528062.7:ENST00000429968.5:ENST00000444878.5:ENST00000665058.1:ENST00000476806.5:ENST00000492779.5:ENST00000448303.5:ENST00000615771.5:ENST00000475651.5:ENST00000490484.7:ENST00000494274.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	64	2	1.64415	1.753885	1.86362	0.0231656	0.0164561	0.127036	0.102235
chr5	131687948	131688048	2719643	0	-	0.48	(0.476,0.515]	chr5	255672	84	INTRON	INTRON	FNIP1	ENSG00000217128.13	ENST00000510461.6:ENST00000307954.12:ENST00000307968.11:ENST00000511848.1	protein_coding	protein_coding	protein_coding	protein_coding	9	75	2	1.32871	1.7538150000000001	2.17892	0.0678032	0.0046578	0.184298	0.0629753
chr15	66583746	66583846	6050798	0	+	0.39	(0.378,0.408]	chr15	576221	11	INTRON	INTRON	LINC01169	ENSG00000259471.1	ENST00000558797.1	lncRNA	lncRNA	lncRNA	lncRNA	26	235	2	1.60638	1.753445	1.90051	0.00779625	0.00168817	0.0787728	0.0370613
chr1	65065920	65066020	475549	0	-	0.54	(0.515,0.57]	chr1	57246	4	SS5_PROX	SS5_PROX:INTRON	JAK1	ENSG00000162434.13	ENST00000672434.1:ENST00000671954.1:ENST00000673502.1:ENST00000672751.1:ENST00000672099.1	protein_coding	protein_coding	protein_coding	protein_coding	7	53	2	1.60221	1.75342	1.90463	0.0581855	0.0141753	0.188704	0.0959618
chr17	70058099	70058198	6828028	0	-	0.262626	[0,0.28]	chr17	675005	40	INTRON	INTRON	ENSG00000230258	ENSG00000230258.6	ENST00000435112.5:ENST00000587325.1	lncRNA	lncRNA	lncRNA	lncRNA	10	124	2	1.61807	1.753385	1.8887	0.0376815	0.0123003	0.140649	0.0971033
chr5	159186040	159186139	2758951	0	-	0.484848	(0.476,0.515]	chr5	260356	36	INTRON	INTRON	RNF145	ENSG00000145860.12	ENST00000424310.7:ENST00000519865.5:ENST00000274542.6:ENST00000611185.4:ENST00000521606.6:ENST00000518802.5:ENST00000520638.1:ENST00000520548.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	109	2	1.41081	1.753365	2.09592	0.0430655	0.00175358	0.148082	0.0387174
chr1	42684065	42684164	83959	0	+	0.383838	(0.378,0.408]	chr1	11020	2	INTRON	INTRON	YBX1	ENSG00000065978.19	ENST00000321358.12:ENST00000332220.10:ENST00000436427.1:ENST00000467957.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	93	2	1.41307	1.7533500000000002	2.09363	0.0510067	0.00513434	0.176593	0.062965
chr6	30615393	30615490	3077351	0	-	0.536082	(0.515,0.57]	chr6	286294	4	INTRON	INTRON	PPP1R10	ENSG00000204569.10	ENST00000376511.7:ENST00000484449.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	14	98	2	1.61208	1.75335	1.89462	0.0139002	0.00896322	0.10247	0.0800238
chr1	224004606	224004706	321044	0	+	0.31	(0.28,0.32]	chr1	36981	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	SEPTIN7P13	ENSG00000185495.10	ENST00000622033.4:ENST00000618315.4:ENST00000449219.2:ENST00000572124.2	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript	15	157	2	1.17055	1.75331	2.33607	0.0681367	0.00104057	0.184298	0.0296324
chr16	68086216	68086316	6370228	0	+	0.37	(0.35,0.378]	chr16	612177	3	SS5_PROX	SS5_PROX:INTRON	ENSG00000261864:NFATC3	ENSG00000261864.1:ENSG00000072736.19	ENST00000548144.1:ENST00000563319.5:ENST00000569766.5:ENST00000553077.5:ENST00000566301.5:ENST00000549350.5:ENST00000566893.5:ENST00000575270.5:ENST00000561714.5:ENST00000346183.8:ENST00000568466.6:ENST00000539828.6:ENST00000562171.1:ENST00000349223.9:ENST00000329524.8:ENST00000379165.8:ENST00000562926.5:ENST00000570212.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA:processed_transcript	7	65	2	1.53008	1.75327	1.97646	0.0530361	0.0193942	0.162198	0.119831
chr16	89891692	89891792	6422623	0	+	0.42	(0.408,0.44]	chr16	616752	1	SS3_PROX	SS3_PROX:INTRON	TCF25	ENSG00000141002.20	ENST00000640279.1:ENST00000263347.11:ENST00000263346.13:ENST00000561958.5:ENST00000565196.5:ENST00000564652.5:ENST00000568412.5:ENST00000566751.5:ENST00000562256.5:ENST00000568409.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	12	99	2	1.62745	1.7532450000000002	1.87904	0.0145847	0.011526	0.105962	0.0889104
chr5	38938516	38938616	2604239	0	-	0.35	(0.32,0.35]	chr5	247703	7	UTR3	UTR3:EXON_MRNA	RICTOR	ENSG00000164327.13	ENST00000357387.8	protein_coding	protein_coding	protein_coding	protein_coding	11	105	2	1.35397	1.7531999999999999	2.15243	0.0475566	0.0057293	0.153019	0.0681402
chr14	21250748	21250848	5834979	0	-	0.37	(0.35,0.378]	chr14	554459	139	INTRON	INTRON	HNRNPC	ENSG00000092199.19	ENST00000336053.10:ENST00000553300.6:ENST00000554969.5:ENST00000556142.5:ENST00000554455.5:ENST00000430246.6:ENST00000553753.5:ENST00000555309.5:ENST00000555914.5:ENST00000557442.5:ENST00000556628.5:ENST00000556513.5:ENST00000555883.5:ENST00000557201.5:ENST00000556897.5:ENST00000420743.6:ENST00000554539.5:ENST00000554383.5:ENST00000555215.5:ENST00000555137.5:ENST00000554891.5:ENST00000556226.5:ENST00000555176.5:ENST00000553614.5:ENST00000557336.1:ENST00000557768.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	90	2	1.74826	1.7531599999999998	1.75806	0.0279529	0.01179	0.124524	0.0962115
chr10	32936423	32936523	4592488	0	-	0.33	(0.32,0.35]	chr10	423503	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	ITGB1	ENSG00000150093.20	ENST00000609742.3:ENST00000678989.1:ENST00000677363.1:ENST00000302278.8:ENST00000396033.6:ENST00000417122.7:ENST00000676895.1:ENST00000678120.1:ENST00000676623.1:ENST00000678952.1:ENST00000677999.1:ENST00000679187.1:ENST00000678479.1:ENST00000676964.1:ENST00000488494.6:ENST00000488427.2:ENST00000678591.1:ENST00000678943.1:ENST00000437302.6:ENST00000678701.1:ENST00000678766.1:ENST00000676659.1:ENST00000677310.1:ENST00000474568.6:ENST00000676460.1:ENST00000475184.6:ENST00000484088.5:ENST00000480226.5:ENST00000534049.5:ENST00000528877.5:ENST00000414670.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	50	2	1.72898	1.75301	1.77704	0.0719969	0.0425433	0.187322	0.161951
chr3	49987259	49987359	1423432	0	+	0.28	[0,0.28]	chr3	149988	52	INTRON	INTRON	RBM6	ENSG00000004534.15	ENST00000442092.5:ENST00000443081.5:ENST00000419610.5:ENST00000441115.5:ENST00000422955.5:ENST00000454079.5:ENST00000266022.9:ENST00000425608.5:ENST00000434592.5:ENST00000464013.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	72	2	1.60593	1.752955	1.89998	0.0599553	0.0433625	0.169548	0.162255
chr6	47513627	47513726	2873924	0	+	0.262626	[0,0.28]	chr6	272731	98	INTRON	INTRON	CD2AP	ENSG00000198087.7	ENST00000359314.5	protein_coding	protein_coding	protein_coding	protein_coding	6	72	2	1.60593	1.752955	1.89998	0.0599553	0.0433625	0.169548	0.162255
chr9	131182783	131182882	4216217	0	+	0.282828	(0.28,0.32]	chr9	386630	40	INTRON	INTRON	NUP214	ENSG00000126883.19	ENST00000695497.1:ENST00000695498.1:ENST00000695496.1:ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000525980.5:ENST00000526346.5:ENST00000531929.5:ENST00000651334.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	92	2	1.4144	1.752925	2.09145	0.042942	0.0172565	0.162255	0.104099
chr1	235300028	235300128	663581	0	-	0.42	(0.408,0.44]	chr1	78552	389	INTRON	INTRON	ARID4B	ENSG00000054267.22	ENST00000349213.7:ENST00000366603.6:ENST00000264183.9:ENST00000421364.5:ENST00000491632.5:ENST00000418304.1:ENST00000466653.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	43	2	1.74775	1.7528299999999999	1.75791	0.0735403	0.0378795	0.190238	0.157034
chr4	55527828	55527927	2149718	0	-	0.424242	(0.408,0.44]	chr4	211545	174	INTRON	INTRON	CLOCK	ENSG00000134852.15	ENST00000513440.6:ENST00000381322.5:ENST00000435527.6:ENST00000506923.5:ENST00000509151.5:ENST00000513033.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	43	2	1.74775	1.7528299999999999	1.75791	0.0735403	0.0378795	0.190238	0.157034
chr8	127997513	127997607	3862105	0	+	0.414894	(0.408,0.44]	chr8	355504	6	EXON_LNCRNA	EXON_LNCRNA:INTRON	PVT1	ENSG00000249859.13	ENST00000667305.1:ENST00000690350.1:ENST00000653522.1:ENST00000661830.1:ENST00000657289.1:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000657211.1:ENST00000653845.1:ENST00000651587.1:ENST00000692980.1:ENST00000654324.1:ENST00000657693.1:ENST00000666080.1:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000662410.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000654091.1:ENST00000657356.1:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000667714.1:ENST00000654105.1:ENST00000660438.1:ENST00000664995.1:ENST00000670714.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000668123.1:ENST00000666776.1:ENST00000659912.1:ENST00000670532.1:ENST00000523068.2:ENST00000671088.1:ENST00000670204.1:ENST00000663461.1:ENST00000513868.6:ENST00000692433.1:ENST00000523190.7:ENST00000685606.1:ENST00000690788.1:ENST00000685634.1:ENST00000653990.1:ENST00000655783.1:ENST00000656411.1:ENST00000664742.1:ENST00000655099.1:ENST00000662709.1:ENST00000512617.7:ENST00000660122.1:ENST00000666452.1:ENST00000659666.1:ENST00000659892.1:ENST00000521600.5:ENST00000522875.5:ENST00000653497.1:ENST00000668098.1:ENST00000659106.1:ENST00000658840.1:ENST00000666147.1	lncRNA	lncRNA	lncRNA	lncRNA	5	43	2	1.74775	1.7528299999999999	1.75791	0.0735403	0.0378795	0.190238	0.157034
chr7	4769047	4769147	3270793	0	+	0.4	(0.378,0.408]	chr7	303926	67	UTR3	UTR3:EXON_MRNA	FOXK1	ENSG00000164916.11	ENST00000328914.5	protein_coding	protein_coding	protein_coding	protein_coding	12	106	2	1.64059	1.7528000000000001	1.86501	0.0181131	0.00909047	0.114853	0.0809378
chr1	202761260	202761354	620263	0	-	0.457447	(0.44,0.476]	chr1	73624	3	INTRON	INTRON	KDM5B	ENSG00000117139.18	ENST00000367265.9:ENST00000648338.1:ENST00000649542.1:ENST00000647757.1:ENST00000367264.7:ENST00000648473.1:ENST00000650569.1:ENST00000648056.1:ENST00000649770.1:ENST00000648469.1:ENST00000650417.1:ENST00000235790.9:ENST00000650422.1:ENST00000649321.1:ENST00000648738.1:ENST00000648744.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	43	2	1.49942	1.752755	2.00609	0.0792118	0.0360127	0.199574	0.152355
chr15	51911180	51911279	6027968	0	+	0.292929	(0.28,0.32]	chr15	574346	25	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	TMOD3	ENSG00000138594.14	ENST00000308580.12:ENST00000560549.5:ENST00000561438.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	76	2	1.60333	1.7527149999999998	1.9021	0.0413158	0.0304779	0.161534	0.130699
chr1	22064451	22064535	42321	0	+	0.464286	(0.44,0.476]	chr1	5079	4	SS5_PROX	SS5_PROX:INTRON	ENSG00000289694:CDC42	ENSG00000289694.1:ENSG00000070831.18	ENST00000695855.1:ENST00000695856.1:ENST00000344548.8:ENST00000400259.5:ENST00000667384.2:ENST00000411827.2:ENST00000695858.1:ENST00000695857.1:ENST00000315554.14:ENST00000695859.1:ENST00000498236.1:ENST00000656825.1:ENST00000651171.1:ENST00000652582.1:ENST00000695860.1:ENST00000695796.1:ENST00000695797.1:ENST00000662562.2:ENST00000695798.1:ENST00000695799.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	75	2	1.45853	1.752635	2.04674	0.0470887	0.00803423	0.152251	0.0803474
chr8	102384102	102384201	4012470	0	-	0.323232	(0.32,0.35]	chr8	367237	221	INTRON	INTRON	UBR5	ENSG00000104517.13	ENST00000520539.6:ENST00000220959.8:ENST00000521922.5	protein_coding	protein_coding	protein_coding	protein_coding	7	64	2	1.46273	1.75255	2.04237	0.0451962	0.0375542	0.163755	0.140222
chr5	146141757	146141857	2746978	0	-	0.35	(0.32,0.35]	chr5	258805	16	EXON_MRNA	EXON_MRNA:INTRON	LARS1	ENSG00000133706.19	ENST00000674174.1:ENST00000674170.1:ENST00000674479.1:ENST00000674309.1:ENST00000674218.1:ENST00000674467.1:ENST00000674290.1:ENST00000674447.1:ENST00000674270.1:ENST00000674383.1:ENST00000674191.1:ENST00000674158.1:ENST00000506231.6:ENST00000674471.1:ENST00000674181.1:ENST00000394434.7:ENST00000674398.1:ENST00000674277.1:ENST00000274562.13:ENST00000510191.5:ENST00000504323.6:ENST00000674310.1:ENST00000512412.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	16	154	2	1.69621	1.75248	1.80875	0.0152603	0.00484058	0.0998217	0.0640618
chr4	98892629	98892729	2208153	0	-	0.43	(0.408,0.44]	chr4	216166	9	INTRON	INTRON	EIF4E	ENSG00000151247.13	ENST00000450253.7:ENST00000280892.10:ENST00000515638.5:ENST00000504432.5:ENST00000511644.5:ENST00000505992.1:ENST00000507665.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	14	106	2	1.40672	1.75245	2.09818	0.0206198	0.00772939	0.122348	0.0757122
chr19	21450368	21450466	7158707	0	-	0.316327	(0.28,0.32]	chr19	723691	6	INTRON	INTRON	ENSG00000268119	ENSG00000268119.7	ENST00000596705.5:ENST00000597444.6	lncRNA	lncRNA	lncRNA	lncRNA	8	87	2	1.67134	1.7522950000000002	1.83325	0.0387947	0.0199548	0.143072	0.120668
chr8	66923125	66923225	3961439	0	-	0.42	(0.408,0.44]	chr8	363414	4	SS3_PROX	SS3_PROX:INTRON	SNHG6	ENSG00000245910.9	ENST00000686474.1:ENST00000520944.6:ENST00000521399.6:ENST00000693345.1:ENST00000520348.6:ENST00000689720.1:ENST00000520619.1:ENST00000521127.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	11	87	2	1.42529	1.75224	2.07919	0.0291499	0.0254657	0.14147	0.12011
chr12	131931514	131931600	5250024	0	+	0.337209	(0.32,0.35]	chr12	499251	1	UTR5	UTR5:EXON_MRNA:INTRON	PUS1	ENSG00000177192.14	ENST00000443358.6:ENST00000322060.9:ENST00000376649.8:ENST00000542167.2:ENST00000538037.5:ENST00000544662.1:ENST00000456665.6:ENST00000544213.5:ENST00000535067.5:ENST00000537484.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	52	2	1.69107	1.752175	1.81328	0.0615716	0.0517392	0.193423	0.159306
chr3	47159630	47159730	1681561	0	-	0.44	(0.408,0.44]	chr3	171624	326	INTRON	INTRON	SETD2	ENSG00000181555.22	ENST00000691544.1:ENST00000638947.2:ENST00000409792.4:ENST00000412450.1	protein_coding	protein_coding	protein_coding	protein_coding	8	68	2	1.4947	1.752155	2.00961	0.0566065	0.00931007	0.167352	0.0855292
chr6	4787705	4787805	2790975	0	+	0.43	(0.408,0.44]	chr6	263598	105	INTRON	INTRON	CDYL	ENSG00000153046.18	ENST00000328908.9:ENST00000491864.1:ENST00000440139.5:ENST00000483019.1:ENST00000397588.8:ENST00000472453.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	68	2	1.4947	1.752155	2.00961	0.0566065	0.00931007	0.167352	0.0855292
chr10	17688573	17688673	4399715	0	+	0.48	(0.476,0.515]	chr10	406179	4	SS5_PROX	SS5_PROX:INTRON	STAM	ENSG00000136738.15	ENST00000377524.8:ENST00000377500.1:ENST00000445846.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	66	2	1.45223	1.7518850000000001	2.05154	0.0336015	0.0284116	0.138377	0.134145
chr1	144302	144401	352749	0	-	0.474747	(0.44,0.476]	chr1	40803	9	INTRON	INTRON	ENSG00000241860	ENSG00000241860.7	ENST00000484859.1:ENST00000490997.5	lncRNA	lncRNA	lncRNA	lncRNA	14	115	2	1.54969	1.75176	1.95383	0.0185226	0.00489311	0.108861	0.0641889
chr1	2230820	2230917	2190	0	+	0.546392	(0.515,0.57]	chr1	549	7	INTRON	INTRON	SKI	ENSG00000157933.10	ENST00000378536.5	protein_coding	protein_coding	protein_coding	protein_coding	6	44	2	1.49871	1.751695	2.00468	0.0770828	0.0166344	0.196285	0.110511
chr7	119732733	119732833	3628665	0	-	0.52	(0.515,0.57]	chr7	337319	274	INTRON	INTRON	LINC02476	ENSG00000225546.6	ENST00000660268.1:ENST00000431071.5	lncRNA	lncRNA	lncRNA	lncRNA	6	44	2	1.49871	1.751695	2.00468	0.0770828	0.0166344	0.196285	0.110511
chr14	101815828	101815928	5819042	0	+	0.53	(0.515,0.57]	chr14	551841	54	INTRON	INTRON	PPP2R5C	ENSG00000078304.20	ENST00000694906.1:ENST00000422945.6:ENST00000554442.5:ENST00000556068.5:ENST00000328724.9:ENST00000554504.1:ENST00000553890.1:ENST00000350249.7:ENST00000557621.5:ENST00000556946.1:ENST00000556307.5:ENST00000553730.5:ENST00000557714.1:ENST00000334743.9:ENST00000445439.7:ENST00000557095.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	19	117	2	1.18195	1.75163	2.32131	0.0318276	0.00139342	0.14477	0.0340865
chr22	19491941	19492041	7476956	0	+	0.44	(0.408,0.44]	chr22	762407	76	INTRON	INTRON	CDC45	ENSG00000093009.11	ENST00000407835.6:ENST00000437685.6:ENST00000483431.5:ENST00000438587.6:ENST00000672837.1:ENST00000263201.7:ENST00000404724.7:ENST00000487669.5:ENST00000428937.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	77	2	1.62832	1.75161	1.8749	0.0264246	0.0212908	0.133676	0.113423
chr22	23186716	23186816	7483265	0	+	0.48	(0.476,0.515]	chr22	763531	41	INTRON	INTRON	BCR	ENSG00000186716.21	ENST00000479188.5:ENST00000359540.7:ENST00000305877.13	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	21	168	2	1.31623	1.75147	2.18671	0.0215399	0.00107682	0.123836	0.0302173
chr4	67544937	67545037	2153511	0	-	0.53	(0.515,0.57]	chr4	212016	2	SS5_PROX	SS5_PROX:INTRON	CENPC	ENSG00000145241.11	ENST00000273853.11:ENST00000506882.5:ENST00000510189.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	44	2	1.7492	1.75146	1.75372	0.0386904	0.0382504	0.15832	0.14279
chr8	38243572	38243670	3735649	0	+	0.285714	(0.28,0.32]	chr8	347117	8	INTRON	INTRON	DDHD2	ENSG00000085788.14	ENST00000397166.7:ENST00000520272.6:ENST00000527415.5:ENST00000532106.1:ENST00000528888.5:ENST00000531344.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	92	2	1.56729	1.751365	1.93544	0.0276828	0.0260617	0.133676	0.123904
chr4	126690766	126690866	2237617	0	-	0.51	(0.476,0.515]	chr4	219023	2253	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	9	71	2	1.40573	1.75135	2.09697	0.0410362	0.0136924	0.161534	0.0949306
chr5	134859247	134859345	2491420	0	+	0.255102	[0,0.28]	chr5	238032	20	UTR3	UTR3:EXON_MRNA	C5orf24	ENSG00000181904.9	ENST00000394976.4:ENST00000504727.1	protein_coding	protein_coding	protein_coding	protein_coding	7	91	2	1.71402	1.751305	1.78859	0.047753	0.0307903	0.170327	0.13151
chr6	161095900	161095997	3025556	0	+	0.298969	(0.28,0.32]	chr6	282401	17	INTRON	INTRON	MAP3K4	ENSG00000085511.20	ENST00000366919.6:ENST00000392142.9:ENST00000366920.6:ENST00000348824.11:ENST00000544041.5:ENST00000490904.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	92	2	1.38178	1.751255	2.12073	0.047484	0.0157269	0.169527	0.101453
chr17	30140515	30140615	6587627	0	+	0.42	(0.408,0.44]	chr17	640563	124	INTRON	INTRON	NSRP1	ENSG00000126653.18	ENST00000540900.7:ENST00000612959.4:ENST00000247026.10:ENST00000577289.6:ENST00000584154.5:ENST00000394826.8:ENST00000475652.5:ENST00000584317.5:ENST00000583301.5:ENST00000585881.5:ENST00000467446.6:ENST00000580103.6:ENST00000581048.5:ENST00000588614.1:ENST00000589608.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	83	2	1.45405	1.751235	2.04842	0.0381812	0.00797555	0.141795	0.0798772
chr8	126281395	126281495	4051446	0	-	0.32	(0.28,0.32]	chr8	369353	1680	INTRON	INTRON	LINC00861	ENSG00000245164.9	ENST00000651482.1	lncRNA	lncRNA	lncRNA	lncRNA	8	85	2	1.39438	1.75099	2.1076	0.0635439	0.0133585	0.177272	0.100772
chr19	46382310	46382410	7081673	0	+	0.39	(0.378,0.408]	chr19	708541	9	EXON_MRNA	EXON_MRNA:INTRON	PPP5C	ENSG00000011485.15	ENST00000012443.9:ENST00000478046.5:ENST00000391919.1:ENST00000527193.1:ENST00000487483.6:ENST00000532058.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	45	2	1.53052	1.750975	1.97143	0.0744544	0.0398704	0.192012	0.161534
chr8	90366066	90366166	3793756	0	+	0.38	(0.378,0.408]	chr8	351792	140	INTRON	INTRON	LINC00534	ENSG00000253394.7	ENST00000662145.1:ENST00000655523.1:ENST00000517400.6:ENST00000658299.1:ENST00000663329.1:ENST00000658342.1:ENST00000523283.6:ENST00000655219.1:ENST00000662692.1:ENST00000667296.1:ENST00000667565.1:ENST00000523406.2:ENST00000659030.1:ENST00000653734.1:ENST00000654785.1:ENST00000524361.5:ENST00000668745.1:ENST00000661519.1:ENST00000671657.1:ENST00000655123.1:ENST00000663098.1:ENST00000670903.1:ENST00000654946.1	lncRNA	lncRNA	lncRNA	lncRNA	5	45	2	1.53052	1.750975	1.97143	0.0744544	0.0398704	0.192012	0.161534
chr9	131146404	131146504	4215837	0	+	0.35	(0.32,0.35]	chr9	386565	1	SS5_PROX	SS5_PROX:INTRON	NUP214	ENSG00000126883.19	ENST00000695497.1:ENST00000695498.1:ENST00000695496.1:ENST00000695495.1:ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000651022.1:ENST00000525980.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	82	2	1.32056	1.75074	2.18092	0.0398275	0.0256608	0.161534	0.120491
chr7	74457870	74457970	3333695	0	+	0.49	(0.476,0.515]	chr7	310175	33	INTRON	INTRON	GTF2IRD1	ENSG00000006704.11	ENST00000265755.7:ENST00000424337.7:ENST00000455841.6	protein_coding	protein_coding	protein_coding	protein_coding	8	68	2	1.63962	1.75072	1.86182	0.0346854	0.0178986	0.148144	0.106365
chr16	2770936	2771036	6280024	0	+	0.54	(0.515,0.57]	chr16	600819	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS3_PROX:INTRON	SRRM2	ENSG00000167978.17	ENST00000301740.13:ENST00000630499.2:ENST00000574331.5:ENST00000573692.1:ENST00000570539.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	30	197	2	1.6081	1.750715	1.89333	0.00263568	0.00234903	0.0472538	0.0435461
chr5	139300565	139300664	2499449	0	+	0.30303	(0.28,0.32]	chr5	238913	7	INTRON	INTRON	MATR3	ENSG00000280987.4:ENSG00000015479.20	ENST00000509990.5:ENST00000506147.5:ENST00000512107.5:ENST00000361059.7:ENST00000394800.6:ENST00000502929.5:ENST00000504203.5:ENST00000514694.5:ENST00000509644.5:ENST00000505016.2:ENST00000502394.1:ENST00000512876.5:ENST00000513678.5:ENST00000513121.1:ENST00000504045.5:ENST00000504311.5:ENST00000502499.5:ENST00000510056.5:ENST00000511249.5:ENST00000394805.8:ENST00000507860.1:ENST00000509918.5:ENST00000503811.5:ENST00000511978.5:ENST00000618441.5:ENST00000508689.1:ENST00000514528.5:ENST00000504643.5:ENST00000514488.1:ENST00000503340.1:ENST00000504023.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	9	97	2	1.54521	1.750645	1.95608	0.0548272	0.00845157	0.165463	0.0828457
chr4	126515825	126515925	2235867	0	-	0.47	(0.44,0.476]	chr4	219023	503	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	11	91	2	1.63371	1.7506300000000001	1.86755	0.0271664	0.00715715	0.123904	0.0756118
chr7	72980317	72980417	3553918	0	-	0.35	(0.32,0.35]	chr7	330643	3	SS3_PROX	SS3_PROX:INTRON	STAG3L3	ENSG00000174353.17	ENST00000436857.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	8	81	2	1.66804	1.7505950000000001	1.83315	0.0313348	0.0271264	0.144381	0.123904
chr5	159197992	159198090	2759072	0	-	0.44898	(0.44,0.476]	chr5	260362	28	INTRON	INTRON	RNF145	ENSG00000145860.12	ENST00000424310.7:ENST00000519865.5:ENST00000274542.6:ENST00000611185.4:ENST00000521606.6:ENST00000518802.5:ENST00000520638.1:ENST00000520548.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	15	121	2	1.71726	1.7505600000000001	1.78386	0.0118461	0.00642964	0.0899583	0.0730725
chr2	130134248	130134347	863615	0	+	0.30303	(0.28,0.32]	chr2	96903	41	INTRON	INTRON	MED15P9	ENSG00000223760.4	ENST00000427638.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	8	84	2	1.59898	1.75054	1.9021	0.0304779	0.030453	0.143385	0.130699
chr14	74892241	74892333	5789887	0	+	0.478261	(0.476,0.515]	chr14	548587	3	INTRON	INTRON	DLST	ENSG00000119689.15	ENST00000556460.5:ENST00000555492.5:ENST00000554612.5:ENST00000334220.9:ENST00000238671.11:ENST00000555190.5:ENST00000555089.5:ENST00000554806.5:ENST00000555988.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	67	2	1.54629	1.75049	1.95469	0.0484352	0.0115753	0.153635	0.0962115
chr6	85636366	85636466	3151381	0	-	0.44	(0.408,0.44]	chr6	293889	119	INTRON	INTRON	ENSG00000271793:SYNCRIP	ENSG00000271793.2:ENSG00000135316.19	ENST00000682083.1:ENST00000683074.1:ENST00000681965.1:ENST00000682504.1:ENST00000682106.1:ENST00000683364.1:ENST00000683436.1:ENST00000684220.1:ENST00000683909.1:ENST00000684462.1:ENST00000616122.5:ENST00000678528.1:ENST00000676637.1:ENST00000677771.1:ENST00000355238.11:ENST00000678878.1:ENST00000677481.1:ENST00000677646.1:ENST00000676630.1:ENST00000678618.1:ENST00000676542.1:ENST00000677059.1:ENST00000444272.2:ENST00000678899.1:ENST00000369622.8:ENST00000678355.1:ENST00000676688.1:ENST00000677514.1:ENST00000678816.1:ENST00000678930.1:ENST00000678589.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	12	102	2	1.64527	1.75047	1.85567	0.0175998	0.0090746	0.11319	0.080809
chr1	171526329	171526425	253633	0	+	0.489583	(0.476,0.515]	chr1	30146	10	INTRON	INTRON	PRRC2C	ENSG00000117523.18	ENST00000647382.2:ENST00000367742.7:ENST00000476522.5:ENST00000338920.8:ENST00000426496.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	55	2	1.57103	1.750435	1.92984	0.0466474	0.0307896	0.151522	0.143385
chr16	21427947	21428046	6460593	0	-	0.393939	(0.378,0.408]	chr16	623218	21	INTRON	INTRON	NPIPB3	ENSG00000169246.16	ENST00000521589.5:ENST00000534903.1:ENST00000545358.5:ENST00000543368.1:ENST00000544154.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	10	87	2	1.56924	1.750385	1.93153	0.0267731	0.0127237	0.123349	0.0986314
chr9	130736754	130736854	4214092	0	+	0.47	(0.44,0.476]	chr9	386427	219	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000393293.4	protein_coding	protein_coding	protein_coding	protein_coding	12	100	2	1.64354	1.7502499999999999	1.85696	0.0157859	0.0107727	0.101453	0.0920575
chr16	29527167	29527267	6470837	0	-	0.34	(0.32,0.35]	chr16	625147	213	INTRON	INTRON	ENSG00000288632	ENSG00000288632.1	ENST00000675579.1	lncRNA	lncRNA	lncRNA	lncRNA	8	77	2	1.50258	1.7502149999999999	1.99785	0.0399817	0.0215554	0.161534	0.114686
chrX	151956144	151956239	7908439	0	-	0.442105	(0.44,0.476]	chrX	804776	4	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	GABRE	ENSG00000102287.19	ENST00000370328.4:ENST00000486255.1:ENST00000483564.5:ENST00000462018.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	17	137	2	1.49171	1.7501600000000002	2.00861	0.0152483	0.00380912	0.0997509	0.0562562
chr3	157151209	157151301	1844607	0	-	0.380435	(0.378,0.408]	chr3	185649	10	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	CCNL1	ENSG00000163660.12	ENST00000461804.5:ENST00000295926.8:ENST00000464316.5:ENST00000631619.1:ENST00000475298.5:ENST00000474539.5:ENST00000471247.5:ENST00000470121.5:ENST00000476367.5:ENST00000477127.5:ENST00000464679.5:ENST00000479052.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	31	256	2	1.51529	1.7499250000000002	1.98456	0.00559265	0.00157168	0.0678837	0.0361658
chr5	54010810	54010910	2617912	0	-	0.55	(0.515,0.57]	chr5	248835	988	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	80	2	1.33683	1.74992	2.16301	0.0345068	0.00510122	0.148025	0.0626075
chr1	35188746	35188824	420559	0	-	0.5	(0.476,0.515]	chr1	50671	3	SS5_PROX	SS5_PROX:INTRON	SFPQ	ENSG00000116560.12	ENST00000470472.5:ENST00000696553.1:ENST00000357214.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	22	195	2	1.39118	1.7499099999999999	2.10864	0.0220404	6.96834e-4	0.123836	0.024224
chr7	148826253	148826353	3670172	0	-	0.29	(0.28,0.32]	chr7	340581	4	SS5_PROX	SS5_PROX:INTRON	EZH2	ENSG00000106462.12	ENST00000683292.1:ENST00000320356.7:ENST00000492143.5:ENST00000478654.5:ENST00000350995.6:ENST00000460911.5:ENST00000683744.1:ENST00000682317.1:ENST00000682263.1:ENST00000684300.1:ENST00000476773.5:ENST00000483967.5:ENST00000498186.5:ENST00000483012.1:ENST00000682401.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	117	2	1.57779	1.749905	1.92202	0.0502605	0.00509726	0.156383	0.0646039
chr16	8106822	8106922	6441577	0	-	0.4	(0.378,0.408]	chr16	620351	992	INTRON	INTRON	ENSG00000260289	ENSG00000260289.2	ENST00000670665.1:ENST00000654046.1:ENST00000567103.2	lncRNA	lncRNA	lncRNA	lncRNA	9	80	2	1.45934	1.749675	2.04001	0.0442931	0.00996995	0.162302	0.08427
chr6	4053173	4053273	2790028	0	+	0.43	(0.408,0.44]	chr6	263540	3	SS5_PROX	SS5_PROX:INTRON	PRPF4B	ENSG00000112739.17	ENST00000480058.5:ENST00000337659.11:ENST00000481109.5:ENST00000463634.6:ENST00000466185.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	15	124	2	1.73272	1.74967	1.76662	0.0113502	0.00636414	0.0886611	0.0724478
chr6	35887311	35887381	3088479	0	-	0.457143	(0.44,0.476]	chr6	288866	1	INTRON	INTRON	SRPK1	ENSG00000096063.16	ENST00000373825.7:ENST00000423325.6:ENST00000346162.10:ENST00000361690.7:ENST00000510290.5:ENST00000373821.6:ENST00000508473.5:ENST00000512445.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	75	2	1.53117	1.74961	1.96805	0.0377545	0.0109533	0.140863	0.0925675
chr1	11796633	11796722	378847	0	-	0.550562	(0.515,0.57]	chr1	44469	2	SS3_PROX	SS3_PROX:INTRON	MTHFR	ENSG00000177000.13	ENST00000376590.9:ENST00000376592.6:ENST00000376583.7:ENST00000376585.6:ENST00000641747.1:ENST00000641805.1:ENST00000641446.1:ENST00000423400.7:ENST00000641407.1:ENST00000641759.1:ENST00000641721.1:ENST00000376486.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	71	2	1.72014	1.74951	1.77888	0.0185015	0.0139834	0.108861	0.10247
chr16	88959673	88959772	6541124	0	-	0.464646	(0.44,0.476]	chr16	634108	20	INTRON	INTRON	CBFA2T3	ENSG00000129993.15	ENST00000268679.9:ENST00000563640.1	protein_coding	protein_coding	protein_coding	protein_coding	11	91	2	1.53934	1.74948	1.95962	0.0286379	0.00707371	0.126977	0.0754923
chr7	44829255	44829354	3528489	0	-	0.454545	(0.44,0.476]	chr7	329097	26	UTR3	UTR3:EXON_MRNA	H2AZ2	ENSG00000105968.19	ENST00000222690.10	protein_coding	protein_coding	protein_coding	protein_coding	10	86	2	1.54104	1.749235	1.95743	0.0339289	0.00839972	0.146815	0.0775646
chr3	48528255	48528354	1688620	0	-	0.40404	(0.378,0.408]	chr3	172531	22	INTRON	INTRON	PFKFB4	ENSG00000114268.12	ENST00000232375.8:ENST00000490115.5:ENST00000383734.6:ENST00000416568.5:ENST00000417753.5:ENST00000445633.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	54	2	1.72045	1.7491349999999999	1.77782	0.0424671	0.0388177	0.161763	0.143072
chr4	48831831	48831931	1958219	0	+	0.38	(0.378,0.408]	chr4	196203	3	SS5_PROX	SS5_PROX:INTRON	OCIAD1	ENSG00000109180.15	ENST00000504654.5:ENST00000509122.5:ENST00000505922.6:ENST00000509664.5:ENST00000514981.5:ENST00000512981.5:ENST00000507210.5:ENST00000508996.5:ENST00000511662.5:ENST00000396448.6:ENST00000512236.5:ENST00000509164.5:ENST00000381473.7:ENST00000511102.5:ENST00000264312.12:ENST00000444354.6:ENST00000509963.5:ENST00000509246.5:ENST00000506801.5:ENST00000503016.5:ENST00000510824.5:ENST00000507546.5:ENST00000513641.5:ENST00000425583.6:ENST00000508293.5:ENST00000513391.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	54	2	1.72045	1.7491349999999999	1.77782	0.0424671	0.0388177	0.161763	0.143072
chr10	43400137	43400237	4605416	0	-	0.39	(0.378,0.408]	chr10	424262	29	INTRON	INTRON	HNRNPF	ENSG00000169813.17	ENST00000356053.7:ENST00000357065.8:ENST00000682386.1:ENST00000337970.7	protein_coding	protein_coding	protein_coding	protein_coding	12	103	2	1.5109	1.749085	1.98727	0.0265396	0.00639052	0.12286	0.0726555
chr22	18569893	18569993	7551051	0	-	0.44	(0.408,0.44]	chr22	771829	170	INTRON	INTRON	PI4KAP1	ENSG00000274602.5	ENST00000612500.4:ENST00000611748.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	8	66	2	1.70933	1.7490700000000001	1.78881	0.0370259	0.0189186	0.139194	0.118303
chr12	76052790	76052890	5369882	0	-	0.29	(0.28,0.32]	chr12	512262	3	SS5_PROX	SS5_PROX:INTRON	NAP1L1	ENSG00000187109.15	ENST00000618691.5:ENST00000552056.5:ENST00000393263.7:ENST00000431879.7:ENST00000552147.5:ENST00000547773.5:ENST00000544816.5:ENST00000542344.5:ENST00000535020.6:ENST00000549596.5:ENST00000547993.5:ENST00000547969.5:ENST00000552342.5:ENST00000547529.6:ENST00000548044.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	92	2	1.59601	1.7490549999999998	1.9021	0.0304779	0.0236042	0.130699	0.12907
chr7	23505363	23505460	3503677	0	-	0.278351	[0,0.28]	chr7	326929	7	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TRA2A	ENSG00000164548.12	ENST00000297071.9:ENST00000392502.8:ENST00000538367.6:ENST00000621813.4:ENST00000497730.1:ENST00000475970.1:ENST00000482395.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	17	207	2	1.45196	1.749005	2.04605	0.0330604	0.00277981	0.133863	0.0488412
chr11	2981005	2981103	4891884	0	-	0.44898	(0.44,0.476]	chr11	458353	14	INTRON	INTRON	NAP1L4	ENSG00000205531.13	ENST00000620138.4:ENST00000380542.9:ENST00000526115.5:ENST00000532325.6:ENST00000448187.5:ENST00000399614.6:ENST00000430811.5:ENST00000529361.5:ENST00000528968.5:ENST00000530064.5:ENST00000526842.5:ENST00000531291.5:ENST00000455338.6:ENST00000534372.1	protein_coding	protein_coding	protein_coding	protein_coding	11	82	2	1.17605	1.748945	2.32184	0.060782	0.00609071	0.192641	0.0676501
chr19	45526803	45526893	7080414	0	+	0.388889	(0.378,0.408]	chr19	708270	8	UTR3	UTR3:EXON_MRNA	VASP	ENSG00000125753.14	ENST00000245932.11:ENST00000586014.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	37	322	2	1.67298	1.748835	1.82469	0.00288821	0.00168891	0.0494641	0.0370752
chr19	11937771	11937871	7019880	0	+	0.41	(0.408,0.44]	chr19	697884	121	INTRON	INTRON	ZNF700	ENSG00000196757.8	ENST00000622593.4:ENST00000254321.10	protein_coding	protein_coding	protein_coding	protein_coding	12	100	2	1.62832	1.74879	1.86926	0.0212908	0.00709955	0.113423	0.0755905
chrX	136920447	136920546	7727572	0	+	0.454545	(0.44,0.476]	chrX	790760	59	INTRON	INTRON	TM9SF5P	ENSG00000234062.9	ENST00000650669.2:ENST00000687469.1:ENST00000431464.6:ENST00000685550.1:ENST00000685929.1:ENST00000424306.5:ENST00000687978.1:ENST00000688713.1:ENST00000693626.1:ENST00000686432.1:ENST00000693698.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	7	59	2	1.56617	1.748505	1.93084	0.0443175	0.0338203	0.162302	0.134476
chr21	39344053	39344152	7465651	0	-	0.494949	(0.476,0.515]	chr21	760594	5	INTRON	INTRON	HMGN1	ENSG00000205581.11	ENST00000492280.5:ENST00000431390.5:ENST00000486741.5:ENST00000380749.10:ENST00000288344.14:ENST00000652622.1:ENST00000436324.5:ENST00000380748.5:ENST00000419378.5:ENST00000489072.5:ENST00000482192.5:ENST00000380747.5:ENST00000485550.5:ENST00000490032.5:ENST00000443046.5:ENST00000464078.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	91	2	1.30826	1.7485	2.18874	0.0587053	0.00255859	0.167915	0.0466761
chr3	183984983	183985073	1882288	0	-	0.455556	(0.44,0.476]	chr3	188193	2	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ABCC5	ENSG00000114770.17	ENST00000334444.11:ENST00000265586.10:ENST00000437205.5:ENST00000382494.6:ENST00000392579.6:ENST00000443376.5:ENST00000427120.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	75	2	1.60467	1.748335	1.892	0.0411383	0.00935701	0.1451	0.0858596
chr7	5706164	5706264	3474197	0	-	0.39	(0.378,0.408]	chr7	324821	533	INTRON	INTRON	RNF216	ENSG00000011275.19	ENST00000425013.6:ENST00000389902.8:ENST00000389900.8:ENST00000484458.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	78	2	1.70953	1.7482799999999998	1.78703	0.0240043	0.0190881	0.119664	0.119229
chr1	2233965	2234064	2222	0	+	0.525253	(0.515,0.57]	chr1	553	9	INTRON	INTRON	SKI	ENSG00000157933.10	ENST00000378536.5:ENST00000508416.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	50	2	1.68552	1.74826	1.811	0.0325989	0.0292028	0.141637	0.133687
chr1	71069520	71069600	482908	0	-	0.275	[0,0.28]	chr1	57854	3	EXON_LNCRNA	EXON_LNCRNA:SS3_PROX:INTRON	ZRANB2	ENSG00000132485.14	ENST00000370920.8:ENST00000254821.10:ENST00000487510.1:ENST00000611683.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	148	2	1.67808	1.7481550000000001	1.81823	0.0253009	0.011743	0.12011	0.0962115
chr17	7484564	7484664	6553312	0	+	0.61	(0.57,1]	chr17	636525	3	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	POLR2A	ENSG00000181222.19	ENST00000617998.6:ENST00000674977.2:ENST00000572844.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	27	111	2	1.7052	1.748065	1.79093	0.00222903	0.0015592	0.0421736	0.0365263
chr3	44498374	44498473	1676766	0	-	0.343434	(0.32,0.35]	chr3	171153	29	INTRON	INTRON	ZNF852	ENSG00000178917.17	ENST00000650400.1	protein_coding	protein_coding	protein_coding	protein_coding	9	84	2	1.36611	1.747955	2.1298	0.0483152	0.0141189	0.172011	0.0959618
chr17	30145607	30145707	6587678	0	+	0.3	(0.28,0.32]	chr17	640563	175	INTRON	INTRON	NSRP1	ENSG00000126653.18	ENST00000540900.7:ENST00000612959.4:ENST00000247026.10:ENST00000577289.6:ENST00000584154.5:ENST00000394826.8:ENST00000475652.5:ENST00000584317.5:ENST00000583301.5:ENST00000585881.5:ENST00000467446.6:ENST00000580103.6:ENST00000581048.5:ENST00000588614.1:ENST00000589608.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	66	2	1.68409	1.747805	1.81152	0.0548665	0.034446	0.165463	0.147767
chr8	23549010	23549110	3715300	0	+	0.41	(0.408,0.44]	chr8	345227	54	INTRON	INTRON	SLC25A37	ENSG00000147454.14	ENST00000519973.6:ENST00000290075.10:ENST00000417331.6:ENST00000518881.5:ENST00000520654.1:ENST00000523930.1:ENST00000523883.5:ENST00000517923.1:ENST00000520949.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	76	2	1.60905	1.747775	1.8865	0.02971	0.0148842	0.129022	0.107116
chr14	101769045	101769145	5818568	0	+	0.57	(0.515,0.57]	chr14	551819	21	INTRON	INTRON	PPP2R5C	ENSG00000078304.20	ENST00000694906.1:ENST00000422945.6:ENST00000554442.5:ENST00000556068.5:ENST00000328724.9:ENST00000554504.1:ENST00000553890.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	70	2	1.33683	1.7477449999999999	2.15866	0.0345068	0.0100547	0.148025	0.0848452
chr1	17408894	17408991	384666	0	-	0.391753	(0.378,0.408]	chr1	45432	23	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RCC2	ENSG00000179051.14	ENST00000375436.9:ENST00000474892.1:ENST00000375433.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	32	269	2	1.6277	1.747685	1.86767	0.00337718	0.00220187	0.0534141	0.0417893
chr7	100310022	100310122	3586508	0	-	0.46	(0.44,0.476]	chr7	334330	89	INTRON	INTRON	PMS2P1	ENSG00000078319.11	ENST00000685724.1:ENST00000692351.1:ENST00000685541.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	8	70	2	1.49356	1.747605	2.00165	0.0537505	0.0109867	0.180803	0.0873897
chr7	23460177	23460277	3503564	0	-	0.38	(0.378,0.408]	chr7	326910	290	INTRON	INTRON	IGF2BP3	ENSG00000136231.14	ENST00000258729.8:ENST00000421467.6:ENST00000468263.5:ENST00000491719.5:ENST00000476938.5:ENST00000468005.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	12	102	2	1.64762	1.7475200000000002	1.84742	0.0136375	0.013385	0.101785	0.0946278
chr22	30408567	30408667	7576741	0	-	0.5	(0.476,0.515]	chr22	775161	199	INTRON	INTRON	RNF215	ENSG00000099999.15	ENST00000431544.2	protein_coding	protein_coding	protein_coding	protein_coding	6	50	2	1.50151	1.7474599999999998	1.99341	0.054954	0.037389	0.165463	0.155878
chr16	70249320	70249418	6510057	0	-	0.479592	(0.476,0.515]	chr16	630495	27	UTR3	UTR3:EXON_MRNA	EXOSC6	ENSG00000223496.3	ENST00000435634.3	protein_coding	protein_coding	protein_coding	protein_coding	11	91	2	1.62304	1.747255	1.87147	0.0168147	0.0157856	0.109464	0.103501
chr22	29287534	29287634	7496260	0	+	0.44	(0.408,0.44]	chr22	764829	4	SS5_PROX	SS5_PROX:INTRON	EWSR1	ENSG00000182944.18	ENST00000629659.2:ENST00000332050.10:ENST00000397938.7:ENST00000406548.5:ENST00000437155.6:ENST00000331029.11:ENST00000483415.5:ENST00000414183.6:ENST00000333395.10:ENST00000332035.10:ENST00000455726.5:ENST00000479135.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	60	2	1.38001	1.74724	2.11447	0.0444754	0.0285207	0.162826	0.12666
chr8	129520480	129520580	4060487	0	-	0.37	(0.35,0.378]	chr8	369648	99	INTRON	INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1:ENST00000676273.1:ENST00000667643.1:ENST00000668791.1:ENST00000663716.1:ENST00000663572.1:ENST00000676148.1:ENST00000667962.1:ENST00000674877.1:ENST00000675316.1:ENST00000674656.1:ENST00000446592.7:ENST00000667341.1:ENST00000675186.1:ENST00000652971.1:ENST00000661447.1:ENST00000674863.1:ENST00000675498.1:ENST00000675527.1:ENST00000676108.1:ENST00000657647.1:ENST00000675589.1:ENST00000675913.1:ENST00000675109.1:ENST00000671632.1:ENST00000671311.1:ENST00000676099.1:ENST00000660652.1:ENST00000675522.1:ENST00000675183.1:ENST00000658861.1:ENST00000663991.1:ENST00000675044.1:ENST00000675435.1:ENST00000674639.1:ENST00000676069.1:ENST00000675532.1:ENST00000674762.1:ENST00000523151.6:ENST00000675948.1:ENST00000665364.1:ENST00000657251.1:ENST00000675166.1:ENST00000674883.1:ENST00000675867.1:ENST00000674580.1:ENST00000675393.1:ENST00000520048.1:ENST00000674906.1:ENST00000676030.1:ENST00000670588.1:ENST00000675072.1:ENST00000664936.1:ENST00000652914.1:ENST00000657069.1	lncRNA	lncRNA	lncRNA	lncRNA	22	166	2	1.03008	1.74723	2.46438	0.0516962	0.00107609	0.176696	0.0301994
chr2	171950780	171950880	918644	0	+	0.52	(0.515,0.57]	chr2	101189	36	INTRON	INTRON	HAT1	ENSG00000128708.13	ENST00000412731.5:ENST00000264108.5:ENST00000457761.6:ENST00000494601.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	50	2	1.7407	1.74721	1.75372	0.0386904	0.0242347	0.14279	0.130613
chr6	17643408	17643506	3065564	0	-	0.55102	(0.515,0.57]	chr6	284800	30	INTRON	INTRON	NUP153	ENSG00000124789.12	ENST00000613258.4:ENST00000537253.5:ENST00000262077.3	protein_coding	protein_coding	protein_coding	protein_coding	7	50	2	1.62814	1.74712	1.8661	0.035203	0.0274846	0.150193	0.123904
chr17	49719259	49719359	6793700	0	-	0.48	(0.476,0.515]	chr17	670394	1	SS5_PROX	SS5_PROX:INTRON	FAM117A	ENSG00000121104.8	ENST00000240364.7:ENST00000513602.5:ENST00000503573.5:ENST00000511743.5:ENST00000503855.5:ENST00000514018.5:ENST00000505159.5:ENST00000506156.1:ENST00000515240.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	51	2	1.69138	1.7471100000000002	1.80284	0.0481165	0.033161	0.153019	0.145899
chr4	55398827	55398922	1960617	0	+	0.305263	(0.28,0.32]	chr4	196542	16	INTRON	INTRON	TMEM165	ENSG00000134851.13	ENST00000381334.10:ENST00000506198.5:ENST00000508404.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	14	153	2	1.19543	1.747085	2.29874	0.0781725	8.60558e-4	0.197251	0.0266163
chr8	11803617	11803716	3702529	0	+	0.444444	(0.44,0.476]	chr8	343484	2	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	FDFT1	ENSG00000079459.13	ENST00000538689.4:ENST00000615631.4:ENST00000618539.4:ENST00000530337.5:ENST00000623368.3:ENST00000446331.6:ENST00000443614.6:ENST00000220584.9:ENST00000525607.5:ENST00000525283.5:ENST00000529464.5:ENST00000525900.5:ENST00000525571.1:ENST00000527045.1:ENST00000528812.5:ENST00000622850.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	18	134	2	1.48482	1.74702	2.00922	0.0103782	0.0068301	0.0898677	0.0713163
chr4	126570006	126570106	2236409	0	-	0.32	(0.28,0.32]	chr4	219023	1045	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	15	131	2	1.26174	1.746985	2.23223	0.0332028	0.0109124	0.146011	0.0873034
chr5	146278645	146278744	2514885	0	+	0.30303	(0.28,0.32]	chr5	240255	66	INTRON	INTRON	ENSG00000275740:RBM27	ENSG00000275740.1:ENSG00000091009.8	ENST00000506502.2:ENST00000265271.7	protein_coding	protein_coding	protein_coding	protein_coding	8	84	2	1.49395	1.746915	1.99988	0.0423482	0.0228757	0.161744	0.118056
chr10	68332335	68332435	4440761	0	+	0.67	(0.57,1]	chr10	409479	1	SS5_PROX	SS5_PROX:INTRON	HNRNPH3	ENSG00000096746.18	ENST00000469172.5:ENST00000461310.5:ENST00000265866.12:ENST00000480987.5:ENST00000486854.5:ENST00000467249.1:ENST00000354695.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	26	103	2	1.4329	1.746885	2.06087	0.00712217	7.84324e-4	0.0723634	0.0257816
chr16	227511	227598	6426172	0	-	0.390805	(0.378,0.408]	chr16	617449	3	UTR5	UTR5:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	LUC7L	ENSG00000007392.17	ENST00000337351.8:ENST00000426094.5:ENST00000397783.5:ENST00000629543.2:ENST00000490762.5:ENST00000293872.13:ENST00000419516.5:ENST00000397780.5:ENST00000418978.5:ENST00000430864.5:ENST00000443357.5:ENST00000494366.5:ENST00000469109.1:ENST00000428363.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	80	2	1.28658	1.7468500000000002	2.20712	0.0499541	0.00978751	0.17488	0.0835427
chr1	182388944	182389041	599040	0	-	0.381443	(0.378,0.408]	chr1	71414	3	EXON_LNCRNA	EXON_LNCRNA:SS3_PROX:INTRON	GLUL	ENSG00000135821.19	ENST00000331872.11:ENST00000642379.1:ENST00000311223.9:ENST00000417584.6:ENST00000339526.8:ENST00000491322.1:ENST00000463851.6:ENST00000484996.5:ENST00000489818.5:ENST00000475808.5:ENST00000480604.5:ENST00000462444.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	53	2	1.52219	1.74681	1.97143	0.0531838	0.0398704	0.162538	0.161534
chr3	177108614	177108713	1871551	0	-	0.242424	[0,0.28]	chr3	187402	93	INTRON	INTRON	TBL1XR1	ENSG00000177565.18	ENST00000457928.7:ENST00000430069.5:ENST00000673974.1:ENST00000352800.10:ENST00000422442.6:ENST00000428970.5:ENST00000424913.5:ENST00000437738.5:ENST00000431421.5:ENST00000635794.1:ENST00000630796.2:ENST00000450267.5:ENST00000630833.2:ENST00000431674.5:ENST00000422066.5:ENST00000443315.5:ENST00000627825.2:ENST00000427349.5:ENST00000413084.5:ENST00000637137.1:ENST00000491623.2:ENST00000637544.1:ENST00000636478.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	99	2	1.55741	1.746805	1.9362	0.0792968	0.0103279	0.199711	0.0894692
chr21	34107055	34107155	7401430	0	+	0.48	(0.476,0.515]	chr21	753975	9	INTRON	INTRON	MRPS6	ENSG00000243927.6	ENST00000488492.5:ENST00000477091.5:ENST00000399312.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	65	2	1.43644	1.7467899999999998	2.05714	0.047372	0.0156961	0.169265	0.101453
chr19	55016324	55016424	7100321	0	+	0.42	(0.408,0.44]	chr19	712212	89	INTRON	INTRON	GP6-AS1	ENSG00000267265.6	ENST00000593060.5:ENST00000586845.1	lncRNA	lncRNA	lncRNA	lncRNA	14	107	2	1.16684	1.746515	2.32619	0.0548316	0.00239266	0.165463	0.0450826
chr2	85324581	85324680	1168931	0	-	0.414141	(0.408,0.44]	chr2	124473	3	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	TGOLN2	ENSG00000152291.15	ENST00000398263.6:ENST00000377386.8:ENST00000409015.5:ENST00000409232.7:ENST00000444342.2	protein_coding	protein_coding	protein_coding	protein_coding	7	59	2	1.70409	1.74645	1.78881	0.0370259	0.028108	0.139194	0.137011
chr4	67660168	67660267	2154043	0	-	0.333333	(0.32,0.35]	chr4	212133	106	INTRON	INTRON	UBA6	ENSG00000033178.13	ENST00000322244.10	protein_coding	protein_coding	protein_coding	protein_coding	6	57	2	1.49965	1.74636	1.99307	0.0542985	0.04271	0.182243	0.148082
chr7	12374588	12374688	3485135	0	-	0.23	[0,0.28]	chr7	325921	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	VWDE	ENSG00000146530.15	ENST00000275358.8:ENST00000452576.6:ENST00000521169.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	23	279	2	1.50157	1.74631	1.99105	0.0234152	0.00179222	0.118543	0.0392772
chr4	70914341	70914441	1970625	0	+	0.39	(0.378,0.408]	chr4	197571	114	INTRON	INTRON	MOB1B	ENSG00000173542.9	ENST00000502869.5:ENST00000509041.5:ENST00000309395.7:ENST00000396051.2:ENST00000511449.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	10	74	2	1.43345	1.74621	2.05897	0.0339294	0.0254532	0.134508	0.133676
chr22	21596456	21596556	7481992	0	+	0.49	(0.476,0.515]	chr22	763238	31	INTRON	INTRON	UBE2L3	ENSG00000185651.16	ENST00000458578.6:ENST00000545681.2:ENST00000696046.1:ENST00000342192.9:ENST00000496722.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	27	215	2	1.18147	1.7461200000000001	2.31077	0.0338446	1.65764e-4	0.134508	0.0111355
chr7	152160885	152160979	3678478	0	-	0.351064	(0.35,0.378]	chr7	341422	4	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	KMT2C	ENSG00000055609.21	ENST00000360104.8:ENST00000262189.11:ENST00000418061.2:ENST00000680877.1:ENST00000424877.6:ENST00000679560.1:ENST00000683120.1:ENST00000681923.1:ENST00000679393.1:ENST00000683200.1:ENST00000680029.1:ENST00000683178.1:ENST00000683502.1:ENST00000684261.1:ENST00000682283.1:ENST00000473186.5:ENST00000684649.1:ENST00000679882.1:ENST00000683397.1:ENST00000684307.1:ENST00000683625.1:ENST00000684398.1:ENST00000683670.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	85	2	1.57499	1.746025	1.91706	0.026412	0.0185901	0.122506	0.117264
chr22	49652326	49652426	7602611	0	-	0.4	(0.378,0.408]	chr22	778594	249	INTRON	INTRON	MIR3667HG	ENSG00000188511.13	ENST00000414287.5:ENST00000416411.1:ENST00000689875.1:ENST00000400023.5:ENST00000405854.5	lncRNA	lncRNA	lncRNA	lncRNA	14	120	2	1.62876	1.745885	1.86301	0.0174498	0.00544393	0.104688	0.066876
chr20	35739937	35740035	7336536	0	-	0.357143	(0.35,0.378]	chr20	747503	5	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RBM39	ENSG00000131051.24	ENST00000253363.11:ENST00000639702.1:ENST00000656873.1:ENST00000463004.5:ENST00000361162.10:ENST00000403542.6:ENST00000338163.10:ENST00000528062.7:ENST00000429968.5:ENST00000444878.5:ENST00000665058.1:ENST00000374038.7:ENST00000412738.5:ENST00000434927.5:ENST00000425184.5:ENST00000455343.5:ENST00000416108.5:ENST00000426951.5:ENST00000442447.5:ENST00000449489.5:ENST00000433027.5:ENST00000453310.5:ENST00000416529.5:ENST00000397370.3:ENST00000463098.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	17	146	2	1.4937	1.74588	1.99806	0.0133129	0.00563025	0.100493	0.0653997
chr12	120197645	120197726	5433273	0	-	0.419753	(0.408,0.44]	chr12	519350	3	UTR5	UTR5:EXON_MRNA:SS3_PROX:INTRON	RPLP0	ENSG00000089157.16	ENST00000392514.9:ENST00000551150.5:ENST00000546989.5:ENST00000313104.9:ENST00000552292.5:ENST00000228306.8:ENST00000552461.5:ENST00000549098.5:ENST00000551258.5:ENST00000546990.5:ENST00000547211.5:ENST00000547475.5:ENST00000547173.5:ENST00000550856.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	79	2	1.73381	1.74586	1.75791	0.0378795	0.0145181	0.157034	0.0977607
chr10	84147260	84147356	4477118	0	+	0.40625	(0.378,0.408]	chr10	412143	19	INTRON	INTRON	GHITM	ENSG00000165678.22	ENST00000691609.1:ENST00000372134.6:ENST00000690587.1:ENST00000686583.1:ENST00000690067.1:ENST00000691751.1:ENST00000687085.1:ENST00000692871.1:ENST00000691155.1:ENST00000690920.1:ENST00000688802.1:ENST00000686247.1:ENST00000690283.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	61	2	1.73164	1.7458200000000001	1.76	0.0441773	0.023484	0.149888	0.128531
chr5	151810109	151810208	2522214	0	+	0.383838	(0.378,0.408]	chr5	241380	47	UTR3	UTR3:EXON_MRNA:INTRON	G3BP1	ENSG00000145907.16	ENST00000678964.1:ENST00000678925.1:ENST00000394123.7:ENST00000676978.1:ENST00000679289.1:ENST00000677493.1:ENST00000676644.1:ENST00000677757.1:ENST00000356245.8:ENST00000678646.1:ENST00000677381.1:ENST00000678904.1:ENST00000677923.1:ENST00000677323.1:ENST00000676715.1:ENST00000676734.1:ENST00000676878.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	61	2	1.73164	1.7458200000000001	1.76	0.0441773	0.023484	0.149888	0.128531
chr4	122935463	122935538	2035757	0	+	0.386667	(0.378,0.408]	chr4	202319	2	SS3_PROX	SS3_PROX:INTRON	SPATA5	ENSG00000145375.9	ENST00000675612.1:ENST00000274008.5:ENST00000674886.1:ENST00000422835.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	61	2	1.71374	1.7457799999999999	1.77782	0.0388177	0.0274158	0.143072	0.136498
chr5	178210983	178211073	2559475	0	+	0.277778	[0,0.28]	chr5	244660	5	UTR3	UTR3:EXON_MRNA	HNRNPAB	ENSG00000197451.12	ENST00000358344.8:ENST00000506339.5:ENST00000355836.9:ENST00000514633.5:ENST00000515193.5:ENST00000506259.5:ENST00000504898.5	protein_coding	protein_coding	protein_coding	protein_coding	31	384	2	1.6743	1.745755	1.81721	0.00780044	0.00403407	0.0759016	0.0578376
chr17	30130033	30130132	6587522	0	+	0.323232	(0.32,0.35]	chr17	640563	19	INTRON	INTRON	NSRP1	ENSG00000126653.18	ENST00000540900.7:ENST00000612959.4:ENST00000247026.10:ENST00000577289.6:ENST00000584154.5:ENST00000394826.8:ENST00000475652.5:ENST00000584317.5:ENST00000583301.5:ENST00000585881.5:ENST00000467446.6:ENST00000580103.6:ENST00000581048.5:ENST00000588614.1:ENST00000589608.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	69	2	1.64769	1.74567	1.84365	0.0578603	0.0184323	0.167723	0.116493
chr7	111372074	111372173	3622203	0	-	0.363636	(0.35,0.378]	chr7	337093	4082	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	104	2	1.27441	1.745635	2.21686	0.0507239	0.00414535	0.156453	0.0589266
chr16	85578740	85578840	6415619	0	+	0.62	(0.57,1]	chr16	615470	220	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	9	39	2	1.42298	1.7456049999999999	2.06823	0.0510995	0.00680672	0.176696	0.0711884
chr16	29524072	29524172	6470806	0	-	0.51	(0.476,0.515]	chr16	625147	182	INTRON	INTRON	ENSG00000288632	ENSG00000288632.1	ENST00000675579.1	lncRNA	lncRNA	lncRNA	lncRNA	8	66	2	1.52278	1.745555	1.96833	0.0384487	0.0195007	0.142348	0.119967
chr2	110662786	110662885	1206708	0	-	0.363636	(0.35,0.378]	chr2	128694	4	INTRON	INTRON	BUB1	ENSG00000169679.15	ENST00000302759.11:ENST00000535254.6:ENST00000409311.5:ENST00000466333.5:ENST00000666956.1:ENST00000465029.5:ENST00000477481.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	12	109	2	1.67493	1.74553	1.81613	0.0192907	0.00932362	0.108861	0.085606
chr2	126666938	126667037	862117	0	+	0.393939	(0.378,0.408]	chr2	96613	83	INTRON	INTRON	GYPC	ENSG00000136732.16	ENST00000459787.1:ENST00000259254.9:ENST00000409836.3:ENST00000356887.12	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	86	2	1.42205	1.745385	2.06872	0.0390695	0.00895678	0.161228	0.0800073
chr17	70092676	70092776	6828375	0	-	0.34	(0.32,0.35]	chr17	675009	195	INTRON	INTRON	ENSG00000230258	ENSG00000230258.6	ENST00000435112.5	lncRNA	lncRNA	lncRNA	lncRNA	9	84	2	1.60034	1.74532	1.8903	0.0298043	0.0221816	0.129138	0.124191
chr17	75143973	75144072	6835974	0	-	0.444444	(0.44,0.476]	chr17	675456	74	INTRON	INTRON	JPT1	ENSG00000189159.16	ENST00000409753.8:ENST00000476258.5:ENST00000482348.5:ENST00000304834.11:ENST00000356033.8:ENST00000470924.5:ENST00000481094.1:ENST00000481647.5:ENST00000580380.1:ENST00000581874.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	14	115	2	1.49345	1.745305	1.99716	0.0271885	0.00283912	0.123904	0.049315
chr7	100680083	100680179	3587375	0	-	0.5625	(0.515,0.57]	chr7	334564	7	UTR3	UTR3:EXON_MRNA	GIGYF1	ENSG00000146830.11	ENST00000678049.1:ENST00000646601.1:ENST00000275732.5	protein_coding	protein_coding	protein_coding	protein_coding	58	390	2	1.48059	1.7452200000000002	2.00985	0.00370794	1.56217e-4	0.0535094	0.0106975
chr5	139295197	139295297	2499394	0	+	0.38	(0.378,0.408]	chr5	238910	2	SS5_PROX	SS5_PROX:INTRON	MATR3	ENSG00000280987.4:ENSG00000015479.20	ENST00000509990.5:ENST00000506147.5:ENST00000512107.5:ENST00000361059.7:ENST00000394800.6:ENST00000502929.5:ENST00000504203.5:ENST00000514694.5:ENST00000509644.5:ENST00000505016.2:ENST00000502394.1:ENST00000512876.5:ENST00000513678.5:ENST00000513121.1:ENST00000504045.5:ENST00000504311.5:ENST00000502499.5:ENST00000510056.5:ENST00000511249.5:ENST00000394805.8:ENST00000507860.1:ENST00000509918.5:ENST00000503811.5:ENST00000511978.5:ENST00000618441.5:ENST00000508689.1:ENST00000514528.5:ENST00000504643.5:ENST00000514488.1:ENST00000503340.1:ENST00000504023.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	11	86	2	1.46278	1.7452	2.02762	0.0228092	0.0181059	0.125469	0.107247
chr19	10672527	10672625	7013401	0	+	0.530612	(0.515,0.57]	chr19	696780	6	INTRON	INTRON	ILF3	ENSG00000129351.17	ENST00000449870.5:ENST00000587928.5:ENST00000407004.7:ENST00000589998.5:ENST00000589600.5:ENST00000590009.5:ENST00000587505.5:ENST00000589052.5:ENST00000250241.12:ENST00000590261.5:ENST00000588657.5:ENST00000592763.5:ENST00000587840.5:ENST00000589416.5:ENST00000585835.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	50	2	1.48539	1.7450350000000001	2.00468	0.0553982	0.0166344	0.165463	0.110511
chr7	148836122	148836221	3670278	0	-	0.353535	(0.35,0.378]	chr7	340610	30	INTRON	INTRON	EZH2	ENSG00000106462.12	ENST00000683292.1:ENST00000320356.7:ENST00000492143.5:ENST00000478654.5:ENST00000350995.6:ENST00000460911.5:ENST00000683744.1:ENST00000682317.1:ENST00000682263.1:ENST00000684300.1:ENST00000476773.5:ENST00000483967.5:ENST00000498186.5:ENST00000483012.1:ENST00000682401.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	82	2	1.6756	1.74491	1.81422	0.0226581	0.0219737	0.123836	0.117618
chr6	37174664	37174759	2855301	0	+	0.505263	(0.476,0.515]	chr6	269940	7	UTR3	UTR3:EXON_MRNA	PIM1	ENSG00000137193.14	ENST00000373509.6	protein_coding	protein_coding	protein_coding	protein_coding	90	655	2	1.49622	1.7448800000000002	1.99354	0.00196583	4.10168e-4	0.0411469	0.0186061
chr21	37372806	37372906	7406281	0	+	0.44	(0.408,0.44]	chr21	754846	43	INTRON	INTRON	DYRK1A	ENSG00000157540.22	ENST00000646523.1:ENST00000647425.1:ENST00000647188.2:ENST00000647504.1:ENST00000644942.1:ENST00000338785.8:ENST00000643624.1:ENST00000643551.1:ENST00000426672.6	protein_coding	protein_coding	protein_coding	protein_coding	27	208	2	1.50603	1.74477	1.98351	0.00607914	0.00245021	0.0704496	0.0446137
chr13	28140986	28141086	5460853	0	+	0.47	(0.44,0.476]	chr13	523235	15	INTRON	INTRON	PAN3	ENSG00000152520.14	ENST00000503791.5:ENST00000380958.8:ENST00000399613.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	71	2	1.41932	1.74474	2.07016	0.0391653	0.0151815	0.161534	0.0994339
chr1	19597923	19598014	40401	0	+	0.340659	(0.32,0.35]	chr1	4739	2	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	MICOS10	ENSG00000173436.15	ENST00000648702.1:ENST00000617872.4:ENST00000322753.7:ENST00000486890.5:ENST00000498067.1:ENST00000462646.5:ENST00000467029.5:ENST00000481464.5:ENST00000498642.5:ENST00000479642.1:ENST00000485362.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	57	2	1.54741	1.744715	1.94202	0.0486128	0.0473733	0.169265	0.153946
chr2	61514591	61514688	1130982	0	-	0.247423	[0,0.28]	chr2	121605	5	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	XPO1	ENSG00000082898.19	ENST00000677110.1:ENST00000676553.1:ENST00000677556.1:ENST00000677814.1:ENST00000676771.1:ENST00000677803.1:ENST00000677239.1:ENST00000678790.1:ENST00000677928.1:ENST00000678182.1:ENST00000677150.1:ENST00000678172.1:ENST00000678360.1:ENST00000678081.1:ENST00000676889.1:ENST00000676783.1:ENST00000679035.1:ENST00000677422.1:ENST00000677417.1:ENST00000677813.1:ENST00000676999.1:ENST00000676667.1:ENST00000678263.1:ENST00000678877.1:ENST00000677933.1:ENST00000680228.1:ENST00000677289.1:ENST00000677190.1:ENST00000401558.7:ENST00000428210.5:ENST00000677290.1:ENST00000677850.1:ENST00000451765.6:ENST00000676789.1:ENST00000678741.1:ENST00000404992.6:ENST00000406957.5:ENST00000443240.5:ENST00000476585.5:ENST00000468259.1:ENST00000420673.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	15	173	2	1.55721	1.7446350000000002	1.9320600000000001	0.0152011	0.014367	0.108535	0.096781
chr1	109377982	109378082	520820	0	-	0.55	(0.515,0.57]	chr1	61195	80	INTRON	INTRON	SORT1	ENSG00000134243.12	ENST00000538502.5:ENST00000256637.8:ENST00000493736.5:ENST00000482236.5:ENST00000633956.1:ENST00000471996.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	56	2	1.73535	1.744535	1.75372	0.0386904	0.0165373	0.14279	0.110511
chr11	86049082	86049182	5014643	0	-	0.47	(0.44,0.476]	chr11	473022	171	INTRON	INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000630913.2:ENST00000528398.5:ENST00000356360.9:ENST00000534412.5:ENST00000531558.1:ENST00000531930.5:ENST00000532041.5:ENST00000525162.5:ENST00000528256.1:ENST00000528411.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	26	210	2	1.55036	1.744535	1.93871	0.00884032	0.00120664	0.0793909	0.032067
chrX	41335984	41336082	7645662	0	+	0.377551	(0.35,0.378]	chrX	782485	9	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	DDX3X	ENSG00000215301.11	ENST00000625837.2:ENST00000626301.2:ENST00000629785.2:ENST00000630255.2:ENST00000630370.2:ENST00000630858.2:ENST00000629496.3:ENST00000610559.5:ENST00000611546.2:ENST00000478993.5:ENST00000457138.7:ENST00000643821.1:ENST00000644876.2:ENST00000399959.7:ENST00000644074.1:ENST00000645338.1:ENST00000646196.1:ENST00000642793.1:ENST00000646940.1:ENST00000644307.1:ENST00000645561.1:ENST00000645080.1:ENST00000642597.1:ENST00000642722.1:ENST00000644109.1:ENST00000644958.1:ENST00000646122.1:ENST00000644513.1:ENST00000645589.1:ENST00000441189.4:ENST00000646822.1:ENST00000631641.2:ENST00000615742.4:ENST00000647219.1:ENST00000480592.6:ENST00000646223.1:ENST00000643963.1:ENST00000646319.1:ENST00000645783.1:ENST00000642624.1:ENST00000542215.5:ENST00000644073.1:ENST00000644677.1:ENST00000615313.5:ENST00000622373.1:ENST00000642322.1:ENST00000622198.5:ENST00000645120.1:ENST00000646107.1:ENST00000646627.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	90	2	1.43939	1.74453	2.04967	0.0418517	0.00827328	0.147271	0.0813266
chr16	29506897	29506997	6470634	0	-	0.38	(0.378,0.408]	chr16	625147	10	INTRON	INTRON	ENSG00000288632	ENSG00000288632.1	ENST00000675579.1	lncRNA	lncRNA	lncRNA	lncRNA	14	120	2	1.65121	1.7444950000000001	1.83778	0.0160595	0.00609624	0.101453	0.0706177
chr6	87700677	87700761	3152906	0	-	0.321429	(0.32,0.35]	chr6	294115	3	EXON_LNCRNA	EXON_LNCRNA:INTRON	AKIRIN2	ENSG00000135334.9	ENST00000257787.6:ENST00000420494.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	15	144	2	1.59247	1.7444950000000001	1.89652	0.0269797	0.00320909	0.123585	0.0522604
chr3	197951828	197951898	1598747	0	+	0.5	(0.476,0.515]	chr3	165707	1	INTRON	INTRON	RPL35A	ENSG00000182899.17	ENST00000647248.2:ENST00000448864.6:ENST00000485439.5:ENST00000642387.1:ENST00000329092.12:ENST00000429437.5:ENST00000442341.5:ENST00000439255.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	12	101	2	1.70551	1.7443300000000002	1.78315	0.0215899	0.00988238	0.123836	0.0838372
chr10	35384530	35384630	4424983	0	+	0.45	(0.44,0.476]	chr10	407899	470	INTRON	INTRON	CCNY	ENSG00000108100.18	ENST00000374706.5:ENST00000490012.6:ENST00000493157.6:ENST00000374704.8:ENST00000265375.13:ENST00000339497.7:ENST00000492478.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	74	2	1.24673	1.74431	2.24189	0.0424533	0.0193405	0.161763	0.108861
chr2	111470487	111470578	1211559	0	-	0.538462	(0.515,0.57]	chr2	128918	1	INTRON	INTRON	MIR4435-2HG	ENSG00000172965.17	ENST00000645030.2:ENST00000642191.1:ENST00000673798.1:ENST00000645051.2:ENST00000673649.1:ENST00000669658.1:ENST00000669917.1:ENST00000661559.1:ENST00000653687.1:ENST00000667670.1:ENST00000609220.2:ENST00000656760.1:ENST00000609902.6:ENST00000666683.1:ENST00000674070.1:ENST00000662335.1:ENST00000664422.1:ENST00000673775.1:ENST00000674092.1:ENST00000673958.1:ENST00000658936.1:ENST00000662635.1:ENST00000666204.1:ENST00000659458.1:ENST00000664443.1:ENST00000670295.1:ENST00000661655.1:ENST00000666390.1:ENST00000659079.1:ENST00000660442.1:ENST00000664009.1:ENST00000439362.6:ENST00000654473.1:ENST00000664999.1:ENST00000673728.1:ENST00000659791.1:ENST00000666144.1:ENST00000659933.1:ENST00000670715.1:ENST00000653568.1:ENST00000643013.1:ENST00000673866.1:ENST00000443467.6:ENST00000669875.1:ENST00000673653.1:ENST00000673988.1:ENST00000661945.1:ENST00000669515.1:ENST00000431385.6:ENST00000656416.1:ENST00000674037.1:ENST00000432818.5:ENST00000674013.1:ENST00000444301.5:ENST00000673964.1:ENST00000673845.1:ENST00000673756.1:ENST00000673960.1:ENST00000673804.1:ENST00000673632.1:ENST00000453478.2:ENST00000673937.1:ENST00000673654.1:ENST00000409569.2:ENST00000674087.1:ENST00000419736.5:ENST00000673840.1:ENST00000674045.1:ENST00000673821.1:ENST00000643766.1:ENST00000308604.5:ENST00000604981.5:ENST00000673894.1:ENST00000442293.5:ENST00000441075.1:ENST00000673878.1:ENST00000439494.1	lncRNA	lncRNA	lncRNA	lncRNA	6	44	2	1.67758	1.74429	1.811	0.0471728	0.0325989	0.168737	0.133687
chr16	88654191	88654291	6539219	0	-	0.66	(0.57,1]	chr16	633707	1	SS5_PROX	SS5_PROX:INTRON	MVD	ENSG00000167508.12	ENST00000565149.5:ENST00000301012.8:ENST00000561895.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	11	45	2	1.42019	1.7442099999999998	2.06823	0.0315411	0.00680672	0.144381	0.0711884
chr5	90701291	90701390	2421860	0	+	0.353535	(0.35,0.378]	chr5	232965	38	INTRON	INTRON	ADGRV1	ENSG00000164199.18	ENST00000405460.9:ENST00000640403.1:ENST00000639473.1:ENST00000639431.1:ENST00000640779.1:ENST00000640012.1:ENST00000640374.1:ENST00000509621.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	56	2	1.6122	1.74403	1.87586	0.0616849	0.0268864	0.174021	0.135275
chr3	152315533	152315633	1535454	0	+	0.23	[0,0.28]	chr3	159996	132	INTRON	INTRON	MBNL1	ENSG00000152601.18	ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000495875.6:ENST00000324210.10:ENST00000493459.5:ENST00000459747.1:ENST00000460591.5:ENST00000545754.5:ENST00000357472.7:ENST00000324196.9:ENST00000498502.5:ENST00000463374.5:ENST00000485910.5:ENST00000465907.6:ENST00000492948.5:ENST00000485509.5:ENST00000464596.5	protein_coding	protein_coding	protein_coding	protein_coding	18	197	2	1.3895	1.74397	2.09844	0.0214938	0.0081387	0.123836	0.0766625
chr19	2135829	2135927	7115389	0	-	0.673469	(0.57,1]	chr19	715251	20	INTRON	INTRON	AP3D1	ENSG00000065000.19	ENST00000643116.3:ENST00000345016.9:ENST00000643010.1:ENST00000591284.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	26	2	1.71424	1.743945	1.77365	0.0670385	0.0279017	0.183051	0.137011
chr1	89845380	89845480	159769	0	+	0.37	(0.35,0.378]	chr1	17281	12	INTRON	INTRON	LRRC8D	ENSG00000171492.14	ENST00000525774.5:ENST00000337338.9:ENST00000394593.7:ENST00000532201.5:ENST00000414841.1:ENST00000527156.1	protein_coding	protein_coding	protein_coding	protein_coding	12	103	2	1.58	1.7439200000000001	1.90784	0.0165983	0.0148489	0.106937	0.102621
chr20	47252826	47252925	7348461	0	-	0.545455	(0.515,0.57]	chr20	749282	30	INTRON	INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000467200.6:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000468376.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	15	101	2	1.43616	1.7438550000000002	2.05155	0.018797	0.00440913	0.108861	0.0609369
chr16	88729830	88729928	6539636	0	-	0.520408	(0.515,0.57]	chr16	633912	18	INTRON	INTRON	PIEZO1	ENSG00000103335.22	ENST00000301015.14	protein_coding	protein_coding	protein_coding	protein_coding	7	51	2	1.49871	1.743755	1.9888	0.0770828	0.00963364	0.196285	0.086971
chr10	12024554	12024654	4557598	0	-	0.45	(0.44,0.476]	chr10	420618	100	INTRON	INTRON	UPF2	ENSG00000151461.20	ENST00000357604.10:ENST00000356352.6:ENST00000397053.6	protein_coding	protein_coding	protein_coding	protein_coding	5	43	2	1.55662	1.7437299999999998	1.93084	0.0688347	0.0443175	0.184298	0.162302
chr6	163418374	163418473	3031739	0	+	0.353535	(0.35,0.378]	chr6	282555	15	INTRON	INTRON	QKI	ENSG00000112531.17	ENST00000361758.8:ENST00000453779.6:ENST00000275262.11:ENST00000392127.6:ENST00000361752.8:ENST00000361195.6:ENST00000424802.7:ENST00000545607.5:ENST00000544436.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	47	2	1.5118	1.7436500000000001	1.9755	0.0789277	0.0398617	0.198963	0.161534
chr1	27474397	27474496	406607	0	-	0.444444	(0.44,0.476]	chr1	48986	451	INTRON	INTRON	WASF2	ENSG00000158195.11	ENST00000618852.5:ENST00000536657.1	protein_coding	protein_coding	protein_coding	protein_coding	12	99	2	1.68026	1.74364	1.80702	0.0174736	0.00924948	0.10482	0.0855292
chr5	131690142	131690241	2719665	0	-	0.484848	(0.476,0.515]	chr5	255672	106	INTRON	INTRON	FNIP1	ENSG00000217128.13	ENST00000510461.6:ENST00000307954.12:ENST00000307968.11:ENST00000511848.1	protein_coding	protein_coding	protein_coding	protein_coding	11	90	2	1.73024	1.74359	1.75694	0.0175942	0.0127077	0.105143	0.0985982
chr7	102660372	102660472	3589124	0	-	0.51	(0.476,0.515]	chr7	335089	177	INTRON	INTRON	ENSG00000267645	ENSG00000267645.5	ENST00000476151.5	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	9	71	2	1.23561	1.7434950000000002	2.25138	0.0722004	0.00692374	0.187533	0.0753208
chr2	26034345	26034433	713099	0	+	0.75	(0.57,1]	chr2	82433	4	UTR5	UTR5:EXON_MRNA	RAB10	ENSG00000084733.11	ENST00000264710.5:ENST00000495146.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	19	80	2	1.46304	1.743395	2.02375	0.0148782	9.85452e-4	0.107116	0.0286994
chr22	22487372	22487470	7562059	0	-	0.408163	(0.378,0.408]	chr22	773556	31	UTR3	UTR3:EXON_MRNA	ZNF280B	ENSG00000275004.4	ENST00000626650.3:ENST00000619852.2:ENST00000613655.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	16	135	2	1.48864	1.743325	1.99801	0.0183012	0.00408225	0.108265	0.0581373
chr16	70270640	70270740	6510301	0	-	0.48	(0.476,0.515]	chr16	630578	3	SS3_PROX	SS3_PROX:INTRON	AARS1	ENSG00000090861.17	ENST00000674963.1:ENST00000675643.1:ENST00000675917.1:ENST00000674691.1:ENST00000261772.13:ENST00000675569.1:ENST00000676209.1:ENST00000676211.1:ENST00000676040.1:ENST00000675953.1:ENST00000675691.1:ENST00000676004.1:ENST00000675270.1:ENST00000675403.1:ENST00000676212.1:ENST00000675045.1:ENST00000675035.1:ENST00000676168.1:ENST00000674652.1:ENST00000675133.1:ENST00000675120.1:ENST00000674811.1:ENST00000674512.1:ENST00000675853.1:ENST00000565361.3:ENST00000676247.1:ENST00000674848.1:ENST00000674962.1:ENST00000675371.1:ENST00000675986.1:ENST00000674768.1:ENST00000675297.1:ENST00000675751.1:ENST00000564359.6:ENST00000675338.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	65	2	1.36967	1.74323	2.11679	0.0605132	0.0115627	0.171085	0.0962115
chr5	181257783	181257879	2784020	0	-	0.489583	(0.476,0.515]	chr5	262985	4	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	TRIM52	ENSG00000183718.6	ENST00000503005.2:ENST00000513146.1:ENST00000688015.1:ENST00000611618.1:ENST00000691252.1:ENST00000686030.1:ENST00000685507.1:ENST00000510796.2:ENST00000612671.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	65	2	1.36967	1.74323	2.11679	0.0605132	0.0115627	0.171085	0.0962115
chr3	152269878	152269978	1534993	0	+	0.37	(0.35,0.378]	chr3	159980	1	SS5_PROX	SS5_PROX:INTRON	MBNL1	ENSG00000152601.18	ENST00000477171.1:ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000461436.1:ENST00000495875.6:ENST00000324210.10:ENST00000493459.5:ENST00000459747.1:ENST00000460591.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	20	175	2	1.69058	1.7430949999999998	1.79561	0.00784395	0.00480949	0.076155	0.0638089
chr11	66620845	66620938	4810841	0	+	0.55914	(0.515,0.57]	chr11	447858	1	EXON_LNCRNA	EXON_LNCRNA:INTRON	RBM14-RBM4:RBM14	ENSG00000248643.5:ENSG00000239306.5	ENST00000412278.2:ENST00000393979.3:ENST00000511114.1:ENST00000310137.5:ENST00000409372.1:ENST00000421355.1:ENST00000443702.1:ENST00000500635.2:ENST00000409738.4:ENST00000461478.1:ENST00000496694.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	12	83	2	1.55764	1.74289	1.92814	0.0183076	0.00827421	0.11576	0.0774402
chr3	197126312	197126412	1901768	0	-	0.5	(0.476,0.515]	chr3	190573	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:INTRON	DLG1	ENSG00000075711.21	ENST00000667157.1:ENST00000346964.6:ENST00000656428.1:ENST00000663148.1:ENST00000655488.1:ENST00000357674.9:ENST00000671185.1:ENST00000658701.1:ENST00000667104.1:ENST00000661336.1:ENST00000669565.1:ENST00000670455.1:ENST00000656087.1:ENST00000670366.1:ENST00000653583.1:ENST00000653795.1:ENST00000671246.1:ENST00000661453.1:ENST00000665728.1:ENST00000664564.1:ENST00000653331.1:ENST00000660432.1:ENST00000660898.1:ENST00000657381.1:ENST00000659221.1:ENST00000654737.1:ENST00000669332.1:ENST00000659716.1:ENST00000660553.1:ENST00000664991.1:ENST00000419354.5:ENST00000661440.1:ENST00000667971.1:ENST00000670935.1:ENST00000668578.1:ENST00000666007.1:ENST00000661229.1:ENST00000660237.1:ENST00000657098.1:ENST00000661013.1:ENST00000436682.6:ENST00000452595.5:ENST00000662727.1:ENST00000422288.6:ENST00000448528.6:ENST00000443183.5:ENST00000656944.1:ENST00000392382.6:ENST00000450955.5:ENST00000658155.1:ENST00000669714.1:ENST00000654733.1:ENST00000469073.2:ENST00000419227.5:ENST00000392381.7:ENST00000471733.5:ENST00000419553.6:ENST00000447466.1:ENST00000661808.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	51	2	1.7425	1.742835	1.74317	0.0417334	0.0396373	0.161534	0.147007
chr7	12401561	12401661	3485418	0	-	0.34	(0.32,0.35]	chr7	325970	74	INTRON	INTRON	VWDE	ENSG00000146530.15	ENST00000275358.8:ENST00000452576.6:ENST00000521169.5:ENST00000326715.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	69	2	1.46414	1.742735	2.02133	0.065059	0.017146	0.179599	0.111072
chr21	46196569	46196668	7470540	0	-	0.30303	(0.28,0.32]	chr21	761463	3	SS3_PROX	SS3_PROX:INTRON	LSS	ENSG00000160285.15	ENST00000356396.8:ENST00000397728.8:ENST00000457828.6:ENST00000522411.5	protein_coding	protein_coding	protein_coding	protein_coding	19	199	2	1.57032	1.7426650000000001	1.91501	0.0219541	0.00231301	0.115204	0.0442025
chr10	125077603	125077703	4713505	0	-	0.49	(0.476,0.515]	chr10	434897	381	INTRON	INTRON	CTBP2	ENSG00000175029.17	ENST00000337195.9:ENST00000411419.6:ENST00000494626.6:ENST00000531469.5:ENST00000460976.5:ENST00000476817.1:ENST00000530884.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	97	2	1.72827	1.742605	1.75694	0.0175942	0.00969651	0.105143	0.0874888
chr7	121296547	121296646	3396744	0	+	0.333333	(0.32,0.35]	chr7	317823	10	UTR3	UTR3:EXON_MRNA	CPED1	ENSG00000106034.18	ENST00000310396.10	protein_coding	protein_coding	protein_coding	protein_coding	18	173	2	1.5488	1.7425950000000001	1.93639	0.0165207	0.00333641	0.102588	0.0528877
chr22	32485509	32485609	7507831	0	+	0.36	(0.35,0.378]	chr22	766240	3	SS5_PROX	SS5_PROX:INTRON	FBXO7	ENSG00000100225.18	ENST00000420700.5:ENST00000425028.5:ENST00000266087.12:ENST00000492535.1:ENST00000452138.3:ENST00000397426.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	102	2	1.73435	1.74258	1.75081	0.0427459	0.00634272	0.148082	0.0723103
chr7	119891004	119891104	3630251	0	-	0.22	[0,0.28]	chr7	337335	898	INTRON	INTRON	LINC02476	ENSG00000225546.6	ENST00000660268.1:ENST00000431071.5:ENST00000426413.2	lncRNA	lncRNA	lncRNA	lncRNA	8	87	2	1.31355	1.7425199999999998	2.17149	0.0613574	0.0308079	0.193423	0.13151
chr2	172597069	172597169	920320	0	+	0.41	(0.408,0.44]	chr2	101391	12	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	PDK1	ENSG00000152256.14	ENST00000410055.5:ENST00000282077.8	protein_coding	protein_coding	protein_coding	protein_coding	44	359	2	1.63629	1.742515	1.84874	0.00316178	8.70217e-4	0.0502746	0.0267952
chr20	3968385	3968484	7308934	0	-	0.454545	(0.44,0.476]	chr20	744293	40	INTRON	INTRON	RNF24	ENSG00000101236.17	ENST00000336095.10:ENST00000358395.11:ENST00000432261.6:ENST00000545616.2	protein_coding	protein_coding	protein_coding	protein_coding	6	51	2	1.55662	1.742495	1.92837	0.0688347	0.0222222	0.184298	0.124303
chr8	102375111	102375211	4012380	0	-	0.47	(0.44,0.476]	chr8	367237	131	INTRON	INTRON	UBR5	ENSG00000104517.13	ENST00000520539.6:ENST00000220959.8:ENST00000521922.5	protein_coding	protein_coding	protein_coding	protein_coding	6	51	2	1.55662	1.742495	1.92837	0.0688347	0.0222222	0.184298	0.124303
chr17	30767279	30767375	6590163	0	+	0.46875	(0.44,0.476]	chr17	640876	3	INTRON	INTRON	SUZ12P1	ENSG00000264538.7	ENST00000578070.5:ENST00000579526.5:ENST00000690405.1:ENST00000578195.6:ENST00000582557.5:ENST00000582329.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	7	54	2	1.40212	1.742445	2.08277	0.0524678	0.0309998	0.178047	0.13151
chr22	21824039	21824139	7560950	0	-	0.47	(0.44,0.476]	chr22	773388	158	INTRON	INTRON	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	7	54	2	1.40212	1.742445	2.08277	0.0524678	0.0309998	0.178047	0.13151
chr22	21689512	21689607	7482703	0	+	0.252632	[0,0.28]	chr22	763393	8	EXON_MRNA	EXON_MRNA:INTRON	PPIL2	ENSG00000100023.20	ENST00000679795.1:ENST00000679540.1:ENST00000679580.1:ENST00000681286.1:ENST00000680061.1:ENST00000681338.1:ENST00000681956.1:ENST00000679827.1:ENST00000679534.1:ENST00000679479.1:ENST00000680393.1:ENST00000680463.1:ENST00000680426.1:ENST00000335025.12:ENST00000498109.2:ENST00000398831.8:ENST00000681394.1:ENST00000679477.1:ENST00000626352.2:ENST00000417788.5:ENST00000681791.1:ENST00000679692.1:ENST00000680962.1:ENST00000679857.1:ENST00000680094.1:ENST00000680434.1:ENST00000680109.1:ENST00000406385.1:ENST00000681137.1:ENST00000680860.1:ENST00000680183.1:ENST00000446951.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	14	169	2	1.32641	1.742265	2.15812	0.0533149	0.00296616	0.162788	0.0500469
chr7	6392240	6392340	3273201	0	+	0.33	(0.32,0.35]	chr7	304324	3	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	RAC1	ENSG00000136238.19	ENST00000348035.9:ENST00000356142.4:ENST00000696666.1:ENST00000488373.5:ENST00000497741.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	69	2	1.60297	1.74219	1.88141	0.0647328	0.0161424	0.179192	0.109464
chr9	131194538	131194635	4216342	0	+	0.381443	(0.378,0.408]	chr9	386654	19	INTRON	INTRON	NUP214	ENSG00000126883.19	ENST00000695497.1:ENST00000695498.1:ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000525980.5:ENST00000531929.5:ENST00000651334.1:ENST00000524578.6:ENST00000453861.6:ENST00000470765.5:ENST00000483497.6:ENST00000465486.6:ENST00000531600.1:ENST00000528114.1:ENST00000525384.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	12	102	2	1.43527	1.74218	2.04909	0.0342334	0.0048937	0.135511	0.0641889
chr21	46278117	46278217	7471351	0	-	0.41	(0.408,0.44]	chr21	761688	4	SS3_PROX	SS3_PROX:INTRON	MCM3AP	ENSG00000160294.11	ENST00000397708.1:ENST00000291688.6	protein_coding	protein_coding	protein_coding	protein_coding	7	59	2	1.44993	1.74212	2.03431	0.0638951	0.0154896	0.177824	0.108998
chr5	66162791	66162891	2372681	0	+	0.33	(0.32,0.35]	chr5	228676	3	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	SREK1	ENSG00000153914.16	ENST00000334121.11:ENST00000520953.5:ENST00000522912.5:ENST00000524111.5:ENST00000380918.7:ENST00000284041.7:ENST00000520580.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	96	2	1.70947	1.74208	1.77469	0.0328375	0.0115283	0.133816	0.0960498
chr1	182383024	182383122	598974	0	-	0.346939	(0.32,0.35]	chr1	71395	51	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	GLUL	ENSG00000135821.19	ENST00000331872.11:ENST00000642379.1:ENST00000311223.9:ENST00000417584.6:ENST00000339526.8:ENST00000491322.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	78	757	2	1.73801	1.742045	1.74608	0.00180329	0.00102622	0.0382662	0.0294094
chr7	152032615	152032715	3449580	0	+	0.43	(0.408,0.44]	chr7	322435	45	INTRON	INTRON	GALNT11	ENSG00000178234.13	ENST00000430044.7:ENST00000482812.1:ENST00000431668.1:ENST00000446096.5:ENST00000447778.5:ENST00000423337.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	49	2	1.60344	1.74203	1.88062	0.0534548	0.0387506	0.162935	0.160156
chr8	130012905	130013003	4063898	0	-	0.438776	(0.408,0.44]	chr8	369848	41	INTRON	INTRON	CYRIB	ENSG00000153310.21	ENST00000694912.1:ENST00000523288.5:ENST00000519110.5:ENST00000401979.6:ENST00000523509.5:ENST00000517654.5:ENST00000518879.5:ENST00000522702.5:ENST00000521223.5:ENST00000518283.5:ENST00000523993.5:ENST00000519020.5:ENST00000518167.5:ENST00000522361.1:ENST00000523514.1:ENST00000518285.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	49	2	1.60344	1.74203	1.88062	0.0534548	0.0387506	0.162935	0.160156
chr3	198190277	198190366	1600065	0	+	0.325843	(0.32,0.35]	chr3	165889	6	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	FAM157A	ENSG00000236438.7	ENST00000634862.1:ENST00000615155.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	7	69	2	1.59364	1.74197	1.8903	0.0413426	0.0298043	0.161557	0.129138
chr20	47254220	47254319	7348475	0	-	0.444444	(0.44,0.476]	chr20	749282	44	INTRON	INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000467200.6:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000468376.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	70	2	1.69402	1.7419600000000002	1.7899	0.0456129	0.0158205	0.164236	0.101453
chr4	126643082	126643182	2237140	0	-	0.42	(0.408,0.44]	chr4	219023	1776	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	7	59	2	1.64062	1.741815	1.84301	0.0557275	0.0174311	0.165463	0.112689
chr1	45660656	45660751	440328	0	-	0.347368	(0.32,0.35]	chr1	53358	6	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	GPBP1L1	ENSG00000159592.11	ENST00000290795.7:ENST00000355105.8:ENST00000488278.5:ENST00000480941.1:ENST00000480083.5:ENST00000493083.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	21	201	2	1.5488	1.741765	1.93473	0.0165207	0.00182055	0.102588	0.0395875
chr1	29171710	29171809	410342	0	-	0.373737	(0.35,0.378]	chr1	49420	32	EXON_MRNA	EXON_MRNA:INTRON	SRSF4	ENSG00000116350.18	ENST00000373795.7:ENST00000691479.1:ENST00000634348.1:ENST00000466448.4:ENST00000605204.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	16	139	2	1.52452	1.74173	1.95894	0.0133693	0.00660342	0.100844	0.0703181
chr11	28070121	28070221	4938057	0	-	0.38	(0.378,0.408]	chr11	462472	3	INTRON	INTRON	KIF18A	ENSG00000121621.7	ENST00000263181.7	protein_coding	protein_coding	protein_coding	protein_coding	5	44	2	1.65821	1.741705	1.8252	0.0619563	0.0506302	0.17547	0.174514
chr7	148871273	148871367	3670633	0	-	0.361702	(0.35,0.378]	chr7	340631	6	UTR5	UTR5:EXON_MRNA:INTRON	EZH2	ENSG00000106462.12	ENST00000683292.1:ENST00000320356.7:ENST00000492143.5:ENST00000478654.5:ENST00000350995.6:ENST00000460911.5:ENST00000683744.1:ENST00000682317.1:ENST00000682263.1:ENST00000684300.1:ENST00000476773.5:ENST00000483967.5:ENST00000498186.5:ENST00000483012.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	96	2	1.54566	1.7417	1.93774	0.0207593	0.0149786	0.122348	0.0994339
chr7	23450286	23450386	3503465	0	-	0.36	(0.35,0.378]	chr7	326910	191	INTRON	INTRON	IGF2BP3	ENSG00000136231.14	ENST00000258729.8:ENST00000421467.6:ENST00000468263.5:ENST00000491719.5:ENST00000476938.5:ENST00000468005.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	64	2	1.68908	1.7416399999999999	1.7942	0.0378648	0.0301354	0.142482	0.141212
chr1	227308504	227308604	651621	0	-	0.29	(0.28,0.32]	chr1	77110	434	INTRON	INTRON	CDC42BPA	ENSG00000143776.20	ENST00000366766.8:ENST00000366769.7:ENST00000334218.9:ENST00000366767.7:ENST00000366764.8:ENST00000478573.6:ENST00000682551.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	13	138	2	1.58084	1.74159	1.90234	0.0248774	0.00740298	0.12011	0.0770422
chr3	152317330	152317430	1535472	0	+	0.47	(0.44,0.476]	chr3	159996	150	INTRON	INTRON	MBNL1	ENSG00000152601.18	ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000495875.6:ENST00000324210.10:ENST00000493459.5:ENST00000459747.1:ENST00000460591.5:ENST00000545754.5:ENST00000357472.7:ENST00000324196.9:ENST00000498502.5:ENST00000463374.5:ENST00000485910.5:ENST00000465907.6:ENST00000492948.5:ENST00000485509.5:ENST00000464596.5	protein_coding	protein_coding	protein_coding	protein_coding	37	297	2	1.57666	1.74158	1.9065	0.00668377	5.23141e-4	0.0706546	0.0205204
chr10	17685027	17685127	4399678	0	+	0.32	(0.28,0.32]	chr10	406171	1	SS5_PROX	SS5_PROX:INTRON	STAM	ENSG00000136738.15	ENST00000377524.8:ENST00000377500.1:ENST00000445846.1:ENST00000486183.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	62	2	1.47299	1.7414399999999999	2.00989	0.0597769	0.0427801	0.189982	0.148082
chr11	61330383	61330483	4956486	0	-	0.39	(0.378,0.408]	chr11	465770	2	SS3_PROX	SS3_PROX:INTRON	DDB1	ENSG00000167986.15	ENST00000301764.12:ENST00000680367.1:ENST00000681803.1:ENST00000680717.1:ENST00000679712.1:ENST00000680357.1:ENST00000680075.1:ENST00000679588.1:ENST00000680602.1:ENST00000680881.1:ENST00000681188.1:ENST00000535283.6:ENST00000681935.1:ENST00000680250.1:ENST00000540166.5:ENST00000679855.1:ENST00000681368.1:ENST00000543658.5:ENST00000681067.1:ENST00000680096.1:ENST00000543162.2:ENST00000537120.5:ENST00000539426.5:ENST00000542337.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	61	2	1.6165	1.74124	1.86598	0.0374185	0.0300232	0.155878	0.129138
chr16	74983403	74983503	6527279	0	-	0.37	(0.35,0.378]	chr16	632164	44	INTRON	INTRON	WDR59	ENSG00000103091.15	ENST00000262144.11:ENST00000616369.4:ENST00000536050.5:ENST00000568323.5:ENST00000562331.5:ENST00000564859.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	65	2	1.60653	1.741195	1.87586	0.0427748	0.0268864	0.148082	0.135275
chr16	74978311	74978411	6527227	0	-	0.43	(0.408,0.44]	chr16	632160	121	INTRON	INTRON	WDR59	ENSG00000103091.15	ENST00000262144.11:ENST00000616369.4:ENST00000536050.5:ENST00000568323.5:ENST00000563111.2:ENST00000562331.5:ENST00000564859.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	75	2	1.39614	1.741175	2.08621	0.0567929	0.00683843	0.167723	0.0748032
chr3	47125247	47125347	1681216	0	-	0.42	(0.408,0.44]	chr3	171618	3	INTRON	INTRON	SETD2	ENSG00000181555.22	ENST00000691544.1:ENST00000638947.2:ENST00000409792.4:ENST00000412450.1	protein_coding	protein_coding	protein_coding	protein_coding	13	101	2	1.60291	1.7411150000000002	1.87932	0.0172104	0.0106839	0.104099	0.0917964
chr1	8798375	8798475	373592	0	-	0.39	(0.378,0.408]	chr1	43555	54	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000656437.1:ENST00000659924.1	protein_coding	protein_coding	protein_coding	protein_coding	12	100	2	1.3966	1.7407	2.0848	0.0332291	0.00697927	0.134145	0.0754576
chr18	21599247	21599344	6955102	0	-	0.597938	(0.57,1]	chr18	688038	19	INTRON	INTRON	ESCO1	ENSG00000141446.11	ENST00000269214.10:ENST00000383276.1:ENST00000580101.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	29	2	1.43111	1.740685	2.05026	0.0484405	0.0321326	0.153635	0.145026
chr12	116169001	116169101	5424459	0	-	0.43	(0.408,0.44]	chr12	518263	571	INTRON	INTRON	MED13L	ENSG00000123066.9	ENST00000281928.9:ENST00000650226.1:ENST00000548743.2:ENST00000647567.1:ENST00000551197.2	protein_coding	protein_coding	protein_coding	protein_coding	8	67	2	1.58763	1.740665	1.8937	0.0639217	0.00928733	0.177824	0.0855292
chr7	121077746	121077846	3394534	0	+	0.21	[0,0.28]	chr7	317710	7	INTRON	INTRON	CPED1	ENSG00000106034.18	ENST00000310396.10:ENST00000428526.5:ENST00000450913.6:ENST00000520801.5:ENST00000423795.5:ENST00000443817.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	81	2	1.62448	1.74057	1.85666	0.0660997	0.0302032	0.181924	0.142761
chr11	34092951	34093050	4768080	0	+	0.434343	(0.408,0.44]	chr11	441022	5	INTRON	INTRON	CAPRIN1	ENSG00000135387.21	ENST00000341394.9:ENST00000528856.5:ENST00000389645.7:ENST00000532820.5:ENST00000530820.5:ENST00000529307.1:ENST00000533657.5:ENST00000528948.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	91	2	1.64167	1.7404899999999999	1.83931	0.0266976	0.00806984	0.123349	0.0806514
chr2	20337149	20337249	1076650	0	-	0.32	(0.28,0.32]	chr2	115047	37	INTRON	INTRON	PUM2	ENSG00000055917.16	ENST00000361078.7:ENST00000442400.5:ENST00000420234.5:ENST00000429419.6:ENST00000432105.5:ENST00000446940.5:ENST00000424110.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	70	2	1.56481	1.7404600000000001	1.91611	0.0539102	0.0339805	0.164153	0.146815
chr17	46043943	46044042	6783366	0	-	0.343434	(0.32,0.35]	chr17	669175	42	EXON_MRNA	EXON_MRNA:INTRON	KANSL1	ENSG00000120071.15	ENST00000574590.6:ENST00000572904.6:ENST00000432791.7:ENST00000572218.5:ENST00000575318.6:ENST00000638275.1:ENST00000262419.10:ENST00000648792.1:ENST00000639531.1:ENST00000639150.1:ENST00000640636.1:ENST00000639853.1:ENST00000571698.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	60	2	1.64769	1.74042	1.83315	0.0578603	0.0313348	0.167723	0.144381
chr2	174135156	174135256	1269717	0	-	0.33	(0.32,0.35]	chr2	134275	110	INTRON	INTRON	OLA1	ENSG00000138430.16	ENST00000284719.8:ENST00000344357.9:ENST00000428402.6:ENST00000409546.5:ENST00000429575.1	protein_coding	protein_coding	protein_coding	protein_coding	6	60	2	1.64769	1.74042	1.83315	0.0578603	0.0313348	0.167723	0.144381
chr5	159204739	159204836	2759141	0	-	0.381443	(0.378,0.408]	chr5	260370	7	INTRON	INTRON	RNF145	ENSG00000145860.12	ENST00000424310.7:ENST00000519865.5:ENST00000274542.6:ENST00000611185.4:ENST00000521606.6:ENST00000518802.5:ENST00000520638.1:ENST00000520548.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	54	2	1.65821	1.740395	1.82258	0.0506302	0.0341279	0.17547	0.135102
chr1	167253374	167253473	245176	0	+	0.494949	(0.476,0.515]	chr1	29255	10	INTRON	INTRON	POU2F1	ENSG00000143190.23	ENST00000559038.5:ENST00000367866.7:ENST00000557909.5:ENST00000271411.8:ENST00000429375.6:ENST00000560232.6:ENST00000442313.5:ENST00000367865.5:ENST00000492850.5:ENST00000541643.7:ENST00000648671.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	42	2	1.61586	1.74039	1.86492	0.0567093	0.0550347	0.185107	0.165463
chr3	152400605	152400705	1536309	0	+	0.4	(0.378,0.408]	chr3	160010	40	INTRON	INTRON	MBNL1	ENSG00000152601.18	ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000495875.6:ENST00000324210.10:ENST00000493459.5:ENST00000459747.1:ENST00000460591.5:ENST00000545754.5:ENST00000357472.7:ENST00000324196.9:ENST00000498502.5:ENST00000463374.5:ENST00000485910.5:ENST00000465907.6:ENST00000492948.5:ENST00000485509.5:ENST00000464596.5	protein_coding	protein_coding	protein_coding	protein_coding	5	44	2	1.72045	1.740385	1.76032	0.0721577	0.0424671	0.187433	0.161763
chr7	107236449	107236528	3609734	0	-	0.468354	(0.44,0.476]	chr7	336622	1	CDS	CDS:EXON_MRNA	COG5	ENSG00000164597.15	ENST00000297135.9:ENST00000347053.8:ENST00000393603.7:ENST00000464542.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	51	2	1.66462	1.740285	1.81595	0.0520247	0.0317953	0.159508	0.14477
chr11	46842225	46842325	4948726	0	-	0.39	(0.378,0.408]	chr11	463857	155	INTRON	INTRON	CKAP5	ENSG00000175216.15	ENST00000529230.6:ENST00000312055.9:ENST00000525248.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	44	2	1.59317	1.74023	1.88729	0.0603812	0.0532327	0.19151	0.162538
chr16	18841064	18841164	6457194	0	-	0.4	(0.378,0.408]	chr16	622680	1	SS5_PROX	SS5_PROX:INTRON	SMG1	ENSG00000157106.18	ENST00000446231.7:ENST00000565324.5:ENST00000563448.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	44	2	1.59317	1.74023	1.88729	0.0603812	0.0532327	0.19151	0.162538
chr19	52645363	52645463	7206677	0	-	0.29	(0.28,0.32]	chr19	731394	71	INTRON	INTRON	ZNF83	ENSG00000167766.20	ENST00000600714.5:ENST00000601257.5:ENST00000594682.6:ENST00000687234.1:ENST00000598536.5:ENST00000595171.5:ENST00000596440.5:ENST00000602232.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	66	2	1.57779	1.74021	1.90263	0.0503272	0.0502605	0.17488	0.156383
chr2	214794019	214794117	1326030	0	-	0.459184	(0.44,0.476]	chr2	138633	12	INTRON	INTRON	BARD1	ENSG00000138376.11	ENST00000260947.9:ENST00000617164.5:ENST00000619009.5:ENST00000613374.5:ENST00000650978.1:ENST00000613706.5:ENST00000421162.2:ENST00000613192.2:ENST00000620057.4:ENST00000455743.5:ENST00000471787.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	50	2	1.47433	1.7402099999999998	2.00609	0.0595438	0.0360127	0.16883600000000001	0.152355
chr9	83975270	83975361	4274294	0	-	0.384615	(0.378,0.408]	chr9	393159	3	SS5_PROX	SS5_PROX:INTRON	HNRNPK	ENSG00000165119.21	ENST00000376281.8:ENST00000376263.8:ENST00000351839.7:ENST00000360384.9:ENST00000457156.5:ENST00000472778.5:ENST00000376256.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	95	2	1.60639	1.740205	1.87402	0.0205731	0.0121355	0.122348	0.0910127
chr7	148875938	148876037	3670680	0	-	0.434343	(0.408,0.44]	chr7	340632	47	INTRON	INTRON	EZH2	ENSG00000106462.12	ENST00000683292.1:ENST00000320356.7:ENST00000492143.5:ENST00000478654.5:ENST00000350995.6:ENST00000460911.5:ENST00000683744.1:ENST00000682317.1:ENST00000682263.1:ENST00000476773.5:ENST00000483967.5:ENST00000498186.5:ENST00000483012.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	19	128	2	1.02422	1.740125	2.45603	0.0562638	0.00171857	0.184175	0.0374701
chr17	47216013	47216113	6621418	0	+	0.47	(0.44,0.476]	chr17	645806	17	INTRON	INTRON	MYL4	ENSG00000198336.9	ENST00000571981.5:ENST00000572316.5:ENST00000354968.5:ENST00000570772.5:ENST00000536623.6:ENST00000576874.5:ENST00000573747.6:ENST00000393450.5:ENST00000572303.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	99	2	1.39666	1.74011	2.08356	0.0344316	0.00502853	0.147767	0.0619934
chr1	235111868	235111965	661662	0	-	0.278351	[0,0.28]	chr1	78312	27	UTR3	UTR3:EXON_MRNA	TOMM20	ENSG00000173726.11	ENST00000366607.5	protein_coding	protein_coding	protein_coding	protein_coding	8	88	2	1.45721	1.73993	2.02265	0.0449017	0.0401939	0.161534	0.149888
chr9	130782353	130782453	4214548	0	+	0.37	(0.35,0.378]	chr9	386427	675	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000393293.4	protein_coding	protein_coding	protein_coding	protein_coding	22	196	2	1.65062	1.739655	1.82869	0.00898983	0.00282938	0.0802593	0.0491613
chr16	2458274	2458371	6278221	0	+	0.56701	(0.515,0.57]	chr16	600444	14	UTR3	UTR3:EXON_MRNA	CCNF	ENSG00000162063.13	ENST00000293968.11:ENST00000397066.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	16	113	2	1.57699	1.73965	1.90231	0.0135679	0.00351814	0.101463	0.0526339
chr3	152387175	152387274	1536173	0	+	0.262626	[0,0.28]	chr3	160003	516	INTRON	INTRON	MBNL1	ENSG00000152601.18	ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000495875.6:ENST00000324210.10:ENST00000493459.5:ENST00000459747.1:ENST00000460591.5:ENST00000545754.5:ENST00000357472.7:ENST00000324196.9:ENST00000498502.5:ENST00000463374.5:ENST00000485910.5:ENST00000465907.6:ENST00000492948.5:ENST00000485509.5:ENST00000464596.5	protein_coding	protein_coding	protein_coding	protein_coding	11	134	2	1.68238	1.7395800000000001	1.79678	0.0312916	0.0127186	0.13151	0.0986242
chr1	89839957	89840057	159713	0	+	0.4	(0.378,0.408]	chr1	17274	58	INTRON	INTRON	LRRC8D	ENSG00000171492.14	ENST00000525774.5:ENST00000337338.9:ENST00000394593.7:ENST00000532201.5	protein_coding	protein_coding	protein_coding	protein_coding	8	68	2	1.73164	1.73948	1.74732	0.0441773	0.0166132	0.149888	0.110511
chr16	89482346	89482446	6543520	0	-	0.44	(0.408,0.44]	chr16	634281	507	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	82	2	1.24871	1.73947	2.23023	0.0481368	0.0087201	0.171625	0.0788605
chr16	88783801	88783901	6540208	0	-	0.64	(0.57,1]	chr16	633998	340	INTRON	INTRON	PIEZO1	ENSG00000103335.22	ENST00000301015.14	protein_coding	protein_coding	protein_coding	protein_coding	6	26	2	1.55956	1.739465	1.91937	0.0468438	0.0448639	0.167716	0.149888
chr1	67423601	67423699	477561	0	-	0.285714	(0.28,0.32]	chr1	57477	31	INTRON	INTRON	SERBP1	ENSG00000142864.15	ENST00000370994.8:ENST00000361219.11:ENST00000370995.6:ENST00000370990.5:ENST00000493607.1:ENST00000484880.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	127	2	1.45717	1.739385	2.0216	0.0472947	0.00641631	0.16913	0.06958
chr2	167934305	167934404	1259146	0	-	0.373737	(0.35,0.378]	chr2	133340	332	INTRON	INTRON	B3GALT1-AS1	ENSG00000235335.3	ENST00000430546.2:ENST00000657553.1:ENST00000670221.1:ENST00000436982.2	lncRNA	lncRNA	lncRNA	lncRNA	12	103	2	1.20009	1.739375	2.27866	0.063396	0.00316333	0.177047	0.0516574
chr10	125095400	125095500	4713684	0	-	0.53	(0.515,0.57]	chr10	434903	67	INTRON	INTRON	CTBP2	ENSG00000175029.17	ENST00000337195.9:ENST00000411419.6:ENST00000494626.6:ENST00000531469.5:ENST00000460976.5:ENST00000476817.1:ENST00000530884.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	17	118	2	1.69577	1.739295	1.78282	0.00734494	0.00541583	0.0738721	0.066545000000000007
chr16	2672370	2672470	6432561	0	-	0.29	(0.28,0.32]	chr16	619012	54	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	ERVK13-1	ENSG00000260565.8	ENST00000564340.2:ENST00000663379.1:ENST00000661984.1:ENST00000665388.1:ENST00000568395.2:ENST00000656684.1:ENST00000663519.1:ENST00000669589.1:ENST00000660569.1:ENST00000667008.1:ENST00000661380.1:ENST00000654702.1:ENST00000662929.1:ENST00000670385.1:ENST00000654949.1:ENST00000657531.1:ENST00000661849.1:ENST00000658483.1:ENST00000666404.1:ENST00000659184.1:ENST00000659274.1:ENST00000668411.1:ENST00000669151.1:ENST00000657811.1:ENST00000665778.1:ENST00000653956.1:ENST00000569465.1:ENST00000667109.1:ENST00000665678.1:ENST00000685469.1:ENST00000671018.1:ENST00000564160.1	lncRNA	lncRNA	lncRNA	lncRNA	7	79	2	1.6633	1.7391100000000002	1.81492	0.0522231	0.0253829	0.177274	0.12011
chr10	49975308	49975399	4432968	0	+	0.274725	[0,0.28]	chr10	408710	6	INTRON	INTRON	TIMM23B-AGAP6	ENSG00000178440.8	ENST00000651763.1:ENST00000651208.1:ENST00000429104.1:ENST00000444438.2	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	6	75	2	1.52461	1.739085	1.95356	0.0624132	0.0463152	0.175466	0.166231
chrX	111700843	111700943	7702215	0	+	0.47	(0.44,0.476]	chrX	788221	108	INTRON	INTRON	ALG13	ENSG00000101901.12	ENST00000487141.5:ENST00000394780.8:ENST00000251943.8:ENST00000610588.4:ENST00000621367.4:ENST00000622997.3:ENST00000624161.3:ENST00000636363.1:ENST00000624881.3:ENST00000495283.5:ENST00000486353.5:ENST00000623144.3:ENST00000470971.5:ENST00000623148.3:ENST00000471924.5:ENST00000436609.5:ENST00000470704.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	15	122	2	1.45766	1.73901	2.02036	0.0259298	0.0025344	0.12163	0.0465056
chr1	230074101	230074201	334147	0	+	0.46	(0.44,0.476]	chr1	38926	63	INTRON	INTRON	GALNT2	ENSG00000143641.10	ENST00000494106.1:ENST00000366672.5:ENST00000488903.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	59	2	1.60467	1.73896	1.87325	0.0411383	0.0265709	0.1451	0.134088
chr22	21612896	21612992	7482157	0	+	0.479167	(0.476,0.515]	chr22	763244	15	INTRON	INTRON	UBE2L3	ENSG00000185651.16	ENST00000458578.6:ENST00000545681.2:ENST00000696046.1:ENST00000342192.9:ENST00000496722.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	42	2	1.68092	1.738925	1.79693	0.0649782	0.0474026	0.179417	0.169265
chr3	19963748	19963848	1376202	0	+	0.48	(0.476,0.515]	chr3	145051	105	INTRON	INTRON	RAB5A	ENSG00000144566.11	ENST00000273047.9:ENST00000412966.5:ENST00000446547.5:ENST00000422242.1:ENST00000469122.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	42	2	1.68092	1.738925	1.79693	0.0649782	0.0474026	0.179417	0.169265
chr4	73236099	73236199	2160600	0	-	0.42	(0.408,0.44]	chr4	212799	131	INTRON	INTRON	ANKRD17	ENSG00000132466.20	ENST00000358602.9:ENST00000558247.5:ENST00000330838.10:ENST00000561029.1	protein_coding	protein_coding	protein_coding	protein_coding	7	59	2	1.4947	1.7389000000000001	1.9831	0.0566065	0.018491	0.167352	0.116694
chr20	5607198	5607296	7312307	0	-	0.489796	(0.476,0.515]	chr20	744619	24	INTRON	INTRON	GPCPD1	ENSG00000125772.14	ENST00000379019.7:ENST00000481690.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	13	99	2	1.51299	1.73868	1.96437	0.0156736	0.0124351	0.109464	0.0920366
chr8	38113101	38113199	3734748	0	+	0.5	(0.476,0.515]	chr8	346969	19	INTRON	INTRON	ASH2L	ENSG00000129691.16	ENST00000545394.2:ENST00000343823.11:ENST00000517496.5:ENST00000428278.6:ENST00000521652.5:ENST00000524263.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	43	2	1.63838	1.7385899999999999	1.8388	0.0564473	0.0555021	0.184423	0.165463
chr10	92695061	92695158	4491388	0	+	0.237113	[0,0.28]	chr10	413684	4	UTR3	UTR3:EXON_MRNA	HHEX	ENSG00000152804.11	ENST00000282728.10:ENST00000472590.6	protein_coding	protein_coding	protein_coding	protein_coding	9	110	2	1.66263	1.73851	1.81439	0.0436724	0.0160379	0.148885	0.109464
chr7	130134713	130134812	3414248	0	+	0.343434	(0.32,0.35]	chr7	319162	41	UTR3	UTR3:EXON_MRNA	KLHDC10	ENSG00000128607.14	ENST00000335420.10	protein_coding	protein_coding	protein_coding	protein_coding	42	389	2	1.42349	1.738495	2.0535	0.0073445	9.64277e-4	0.0765441	0.0282401
chr16	8055723	8055823	6441066	0	-	0.42	(0.408,0.44]	chr16	620351	481	INTRON	INTRON	ENSG00000260289	ENSG00000260289.2	ENST00000670665.1:ENST00000654046.1:ENST00000567103.2	lncRNA	lncRNA	lncRNA	lncRNA	10	82	2	1.49971	1.73846	1.97721	0.0298505	0.0121661	0.142135	0.0910127
chr7	127360679	127360779	3633920	0	-	0.26	[0,0.28]	chr7	337748	10	EXON_MRNA	EXON_MRNA:INTRON	ZNF800:ENSG00000280347	ENSG00000048405.11:ENSG00000280347.1	ENST00000485577.1:ENST00000624029.1	protein_coding	TEC	protein_coding:TEC	TEC:processed_transcript	7	80	2	1.53476	1.7384	1.94204	0.0544139	0.0398264	0.164972	0.161534
chr8	11823548	11823645	3702738	0	+	0.453608	(0.44,0.476]	chr8	343510	13	INTRON	INTRON	FDFT1	ENSG00000079459.13	ENST00000538689.4:ENST00000615631.4:ENST00000618539.4:ENST00000623368.3:ENST00000446331.6:ENST00000443614.6:ENST00000220584.9:ENST00000525607.5:ENST00000525283.5:ENST00000529464.5:ENST00000525900.5:ENST00000528812.5:ENST00000622850.2:ENST00000530664.5:ENST00000525954.5:ENST00000531249.2:ENST00000532266.5:ENST00000528643.5:ENST00000525777.5:ENST00000528729.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	83	2	1.42079	1.7381250000000001	2.05546	0.0526065	0.00467486	0.160978	0.0631417
chr2	113940798	113940897	854762	0	+	0.373737	(0.35,0.378]	chr2	95937	3	INTRON	INTRON	ACTR3	ENSG00000115091.12	ENST00000263238.7:ENST00000446821.5:ENST00000535589.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	71	2	1.55918	1.7381199999999999	1.91706	0.0326427	0.026412	0.145164	0.122506
chr1	246177649	246177749	677409	0	-	0.38	(0.378,0.408]	chr1	79721	814	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000391836.3:ENST00000453676.5:ENST00000462422.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	53	2	1.53052	1.7380550000000001	1.94559	0.0744544	0.0211434	0.192012	0.122929
chr19	8461068	8461168	7010925	0	+	0.39	(0.378,0.408]	chr19	696143	51	INTRON	INTRON	HNRNPM	ENSG00000099783.12	ENST00000348943.7:ENST00000597813.5:ENST00000600092.5:ENST00000325495.9:ENST00000600806.5:ENST00000620401.4:ENST00000594907.5:ENST00000596984.5:ENST00000601645.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	53	2	1.53052	1.7380550000000001	1.94559	0.0744544	0.0211434	0.192012	0.122929
chr7	128575291	128575389	3407798	0	+	0.326531	(0.32,0.35]	chr7	318340	1	INTRON	INTRON	ENSG00000280828:ENSG00000242588	ENSG00000280828.1:ENSG00000242588.6	ENST00000479267.2:ENST00000605862.5	lncRNA	lncRNA	lncRNA:unprocessed_pseudogene	lncRNA:unprocessed_pseudogene	21	203	2	1.24023	1.738045	2.23586	0.0440036	4.38355e-4	0.149626	0.0188807
chr12	116202068	116202168	5424792	0	-	0.39	(0.378,0.408]	chr12	518271	209	INTRON	INTRON	MED13L	ENSG00000123066.9	ENST00000281928.9:ENST00000650226.1:ENST00000548743.2:ENST00000647567.1:ENST00000551197.2	protein_coding	protein_coding	protein_coding	protein_coding	12	91	2	1.41067	1.73801	2.06535	0.0236614	0.0159849	0.129075	0.101453
chr2	216118094	216118194	1014433	0	+	0.32	(0.28,0.32]	chr2	107951	3	SS5_PROX	SS5_PROX:INTRON	XRCC5	ENSG00000079246.16	ENST00000392133.7:ENST00000429133.5:ENST00000392132.7:ENST00000417391.1:ENST00000451695.5:ENST00000460284.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	75	2	1.40698	1.7379099999999998	2.06884	0.0778529	0.0152581	0.196685	0.108569
chr1	35184360	35184455	420508	0	-	0.252632	[0,0.28]	chr1	50651	16	UTR3	UTR3:EXON_MRNA:INTRON	SFPQ	ENSG00000116560.12	ENST00000470472.5:ENST00000460428.5:ENST00000696553.1:ENST00000357214.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	47	556	2	1.71806	1.737885	1.75771	0.00535703	0.00253301	0.0642754	0.0465056
chr9	137629232	137629332	4223574	0	+	0.48	(0.476,0.515]	chr9	388152	88	INTRON	INTRON	EHMT1	ENSG00000181090.21	ENST00000462484.5:ENST00000371394.6:ENST00000630754.2:ENST00000460843.6:ENST00000626216.2:ENST00000637593.1:ENST00000629335.2:ENST00000637335.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	65	2	1.33919	1.73746	2.13573	0.06316	0.0119549	0.197199	0.0899583
chr21	46204239	46204338	7470617	0	-	0.373737	(0.35,0.378]	chr21	761464	76	INTRON	INTRON	LSS	ENSG00000160285.15	ENST00000356396.8:ENST00000397728.8:ENST00000457828.6:ENST00000522411.5	protein_coding	protein_coding	protein_coding	protein_coding	33	291	2	1.56303	1.737455	1.91188	0.00832453	8.41396e-4	0.0774402	0.0263691
chr16	89782262	89782358	6544456	0	-	0.479167	(0.476,0.515]	chr16	634529	20	INTRON	INTRON	FANCA	ENSG00000187741.16	ENST00000561667.2:ENST00000389301.8:ENST00000568369.6:ENST00000564475.6:ENST00000696275.1:ENST00000696287.1:ENST00000696286.1:ENST00000696274.1:ENST00000696291.1:ENST00000696276.1:ENST00000567205.2:ENST00000567284.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	58	2	1.4553	1.737415	2.01953	0.0623645	0.0163662	0.175357	0.109586
chr22	21979733	21979831	7561997	0	-	0.489796	(0.476,0.515]	chr22	773552	32	INTRON	INTRON	TOP3B	ENSG00000100038.20	ENST00000357179.10:ENST00000457179.5:ENST00000444502.5:ENST00000398793.6:ENST00000424393.5:ENST00000437929.5:ENST00000430142.5:ENST00000456075.5:ENST00000449704.5:ENST00000437103.1:ENST00000434517.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	13	93	2	1.10022	1.7373500000000002	2.37448	0.066433	0.00419067	0.182434	0.0591344
chr8	9029491	9029591	3695831	0	+	0.48	(0.476,0.515]	chr8	342938	3	SS3_PROX	SS3_PROX:INTRON	ERI1	ENSG00000104626.15	ENST00000519292.5:ENST00000250263.8:ENST00000520332.5:ENST00000518663.1:ENST00000522612.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	58	2	1.69138	1.737265	1.78315	0.0481165	0.0215899	0.153019	0.123836
chr7	99570098	99570198	3362809	0	+	0.34	(0.32,0.35]	chr7	314147	55	INTRON	INTRON	ZNF655	ENSG00000197343.11	ENST00000626122.2:ENST00000454654.5:ENST00000412636.5:ENST00000252713.9:ENST00000449244.5:ENST00000493947.5:ENST00000425063.5:ENST00000493277.5:ENST00000422164.5:ENST00000427931.5:ENST00000422647.5:ENST00000424881.5:ENST00000394163.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	79	2	1.70947	1.73725	1.76503	0.0328375	0.0240772	0.133816	0.129859
chr2	202296137	202296237	985232	0	+	0.34	(0.32,0.35]	chr2	105768	3	SS5_PROX	SS5_PROX:INTRON	NOP58	ENSG00000055044.11	ENST00000264279.10:ENST00000433543.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	69	2	1.54741	1.7372299999999998	1.92705	0.0473733	0.0267365	0.169265	0.123349
chr10	94569991	94570091	4499864	0	+	0.28	[0,0.28]	chr10	414247	9	EXON_MRNA	EXON_MRNA:INTRON	HELLS	ENSG00000119969.15	ENST00000239026.10:ENST00000371332.8:ENST00000348459.10:ENST00000419900.5:ENST00000394036.5:ENST00000394045.5:ENST00000462057.2:ENST00000466552.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	75	2	1.59412	1.737185	1.88025	0.0729426	0.029906	0.189278	0.142135
chr22	49608451	49608551	7602165	0	-	0.64	(0.57,1]	chr22	778570	128	INTRON	INTRON	MIR3667HG	ENSG00000188511.13	ENST00000414287.5:ENST00000416411.1:ENST00000689875.1	lncRNA	lncRNA	lncRNA	lncRNA	10	42	2	1.72406	1.737145	1.75023	0.0261443	0.0111057	0.122221	0.0932699
chr16	75374159	75374259	6528697	0	-	0.42	(0.408,0.44]	chr16	632309	12	INTRON	INTRON	CFDP1	ENSG00000153774.9	ENST00000283882.4:ENST00000612761.1:ENST00000569341.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	52	2	1.62122	1.737135	1.85305	0.0543543	0.0394247	0.182243	0.143072
chr11	120425406	120425504	4877099	0	+	0.418367	(0.408,0.44]	chr11	455834	6	INTRON	INTRON	ARHGEF12	ENSG00000196914.9	ENST00000397843.7:ENST00000356641.7:ENST00000532993.5:ENST00000529970.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	59	2	1.58763	1.737065	1.8865	0.0639217	0.0148842	0.177824	0.107116
chr2	175929866	175929966	1272466	0	-	0.39	(0.378,0.408]	chr2	134508	61	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	LNPK	ENSG00000144320.14	ENST00000272748.9:ENST00000544803.5:ENST00000409660.5:ENST00000479012.1:ENST00000475515.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	51	2	1.71374	1.73703	1.76032	0.0721577	0.0274158	0.187433	0.136498
chr9	131186413	131186510	4216254	0	+	0.381443	(0.378,0.408]	chr9	386631	22	EXON_MRNA	EXON_MRNA:INTRON	NUP214	ENSG00000126883.19	ENST00000695497.1:ENST00000695498.1:ENST00000695496.1:ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000525980.5:ENST00000526346.5:ENST00000531929.5:ENST00000651334.1:ENST00000524578.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	51	2	1.71374	1.73703	1.76032	0.0721577	0.0274158	0.187433	0.136498
chr4	99032749	99032847	2003085	0	+	0.428571	(0.408,0.44]	chr4	199823	7	INTRON	INTRON	METAP1	ENSG00000164024.12	ENST00000510209.5:ENST00000296411.11:ENST00000507537.5:ENST00000506238.5:ENST00000503247.5:ENST00000510107.5:ENST00000513199.5:ENST00000506548.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	59	2	1.55035	1.73677	1.92319	0.0455214	0.0247322	0.164236	0.12011
chr4	55397309	55397405	1960601	0	+	0.479167	(0.476,0.515]	chr4	196541	3	EXON_LNCRNA	EXON_LNCRNA:INTRON	TMEM165	ENSG00000134851.13	ENST00000381334.10:ENST00000506198.5:ENST00000508404.5:ENST00000514070.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	18	150	2	1.41176	1.7365599999999999	2.06136	0.0355057	7.38396e-4	0.137673	0.0248337
chr6	31533206	31533304	3078748	0	-	0.459184	(0.44,0.476]	chr6	286739	4	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	DDX39B	ENSG00000198563.14	ENST00000458640.5:ENST00000462256.5:ENST00000376177.6:ENST00000484566.5:ENST00000396172.6:ENST00000417023.5:ENST00000482195.5:ENST00000431908.5:ENST00000481456.1:ENST00000427214.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	44	346	2	1.34781	1.73654	2.12527	0.0117362	1.72869e-4	0.0894475	0.0114086
chr4	78808270	78808370	1981704	0	+	0.48	(0.476,0.515]	chr4	198463	312	INTRON	INTRON	BMP2K	ENSG00000138756.19	ENST00000389010.7:ENST00000502613.3:ENST00000502871.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	24	190	2	1.27823	1.7365149999999998	2.1948	0.0265074	4.26248e-4	0.122716	0.0184578
chr10	923782	923882	4542508	0	-	0.3	(0.28,0.32]	chr10	419304	204	INTRON	INTRON	LARP4B	ENSG00000107929.16	ENST00000316157.8:ENST00000690516.1:ENST00000476529.5:ENST00000406525.6:ENST00000481118.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	76	2	1.47299	1.7364350000000002	1.99988	0.0597769	0.0228757	0.189982	0.118056
chr16	23684688	23684787	6323690	0	+	0.515152	(0.476,0.515]	chr16	605659	2	INTRON	INTRON	PLK1	ENSG00000166851.15	ENST00000562272.5:ENST00000300093.9:ENST00000562407.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	51	2	1.68092	1.736395	1.79187	0.0474026	0.0362169	0.169265	0.138959
chr6	26138536	26138632	2837138	0	+	0.375	(0.35,0.378]	chr6	266013	6	UTR3	UTR3:EXON_MRNA	H2AC6	ENSG00000180573.10	ENST00000314088.6:ENST00000602637.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	13	117	2	1.65955	1.736265	1.81298	0.0133768	0.0116735	0.10089	0.0891371
chr3	47154335	47154435	1681508	0	-	0.48	(0.476,0.515]	chr3	171624	273	INTRON	INTRON	SETD2	ENSG00000181555.22	ENST00000691544.1:ENST00000638947.2:ENST00000409792.4:ENST00000412450.1	protein_coding	protein_coding	protein_coding	protein_coding	6	49	2	1.40757	1.73624	2.06491	0.0707852	0.0304733	0.184528	0.143385
chr6	27810665	27810756	2839007	0	+	0.406593	(0.378,0.408]	chr6	266438	3	UTR3	UTR3:EXON_MRNA	H3C10	ENSG00000278828.2	ENST00000369163.4	protein_coding	protein_coding	protein_coding	protein_coding	40	320	2	1.36262	1.7362199999999999	2.10982	0.0084861	6.30978e-4	0.083161	0.0231174
chr11	47171125	47171225	4948848	0	-	0.38	(0.378,0.408]	chr11	463894	3	SS5_PROX	SS5_PROX:INTRON	ARFGAP2	ENSG00000149182.15	ENST00000426335.6:ENST00000627920.2:ENST00000524782.6:ENST00000395449.7:ENST00000533243.5:ENST00000527776.5:ENST00000526342.5:ENST00000527927.5:ENST00000532478.5:ENST00000532438.5:ENST00000529455.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	10	86	2	1.51701	1.736175	1.95534	0.0404516	0.00731058	0.144865	0.076234
chr6	147687216	147687315	2990868	0	+	0.373737	(0.35,0.378]	chr6	280163	107	INTRON	INTRON	ENSG00000227681	ENSG00000227681.5	ENST00000427015.1:ENST00000432506.5:ENST00000442094.5	lncRNA	lncRNA	lncRNA	lncRNA	8	75	2	1.59505	1.736175	1.8773	0.040425	0.0184031	0.161534	0.108834
chr16	15661138	15661238	6306992	0	+	0.5	(0.476,0.515]	chr16	603412	87	INTRON	INTRON	NDE1	ENSG00000072864.16	ENST00000396355.5:ENST00000674888.1:ENST00000675171.1:ENST00000675951.1:ENST00000674900.1:ENST00000674588.1:ENST00000674538.1:ENST00000396354.6:ENST00000675926.1:ENST00000570727.5:ENST00000573203.5:ENST00000674995.1:ENST00000674554.1:ENST00000674581.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	48	2	1.48023	1.7361	1.99197	0.0559072	0.039572	0.18407	0.143072
chr2	10638044	10638144	1065879	0	-	0.49	(0.476,0.515]	chr2	113730	31	INTRON	INTRON	NOL10	ENSG00000115761.17	ENST00000695464.1:ENST00000695470.1:ENST00000695467.1:ENST00000695468.1:ENST00000695469.1:ENST00000695466.1:ENST00000381685.10:ENST00000695471.1:ENST00000345985.7:ENST00000538384.5:ENST00000695472.1:ENST00000695473.1:ENST00000695475.1:ENST00000695476.1:ENST00000695477.1:ENST00000695478.1:ENST00000695479.1:ENST00000431319.2:ENST00000695480.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	48	2	1.48023	1.7361	1.99197	0.0559072	0.039572	0.18407	0.143072
chr13	19722560	19722659	5552336	0	-	0.525253	(0.515,0.57]	chr13	530696	126	INTRON	INTRON	PSPC1	ENSG00000121390.19	ENST00000471658.5:ENST00000492741.5:ENST00000635562.1:ENST00000338910.9:ENST00000619300.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	13	90	2	1.7112	1.736075	1.76095	0.0139408	0.00781632	0.095788	0.0788458
chr11	47526276	47526375	4950134	0	-	0.393939	(0.378,0.408]	chr11	464246	16	INTRON	INTRON	CELF1	ENSG00000149187.19	ENST00000310513.10:ENST00000687097.1:ENST00000531165.5:ENST00000530151.5:ENST00000525841.5:ENST00000526419.1	protein_coding	protein_coding	protein_coding	protein_coding	6	53	2	1.63458	1.73599	1.8374	0.0573057	0.0299228	0.167723	0.142135
chr1	246927540	246927640	681919	0	-	0.38	(0.378,0.408]	chr1	80043	88	INTRON	INTRON	AHCTF1	ENSG00000153207.16	ENST00000648844.2:ENST00000326225.3:ENST00000366508.5	protein_coding	protein_coding	protein_coding	protein_coding	9	74	2	1.29896	1.73596	2.17296	0.0575113	0.0110512	0.187655	0.0873897
chr19	18307274	18307368	7151984	0	-	0.510638	(0.476,0.515]	chr19	722755	12	UTR3	UTR3:EXON_MRNA	LSM4	ENSG00000130520.11	ENST00000593829.6:ENST00000252816.10:ENST00000600289.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	22	170	2	1.52273	1.73584	1.94895	0.00792884	0.00341751	0.0797304	0.0517761
chr8	26312310	26312410	3716304	0	+	0.44	(0.408,0.44]	chr8	345372	73	INTRON	INTRON	PPP2R2A	ENSG00000221914.11	ENST00000380737.8:ENST00000520329.5:ENST00000518254.5:ENST00000524169.5:ENST00000518397.5:ENST00000522535.5:ENST00000665949.1:ENST00000522150.5:ENST00000523473.5:ENST00000521095.5:ENST00000660435.1:ENST00000523925.5:ENST00000524099.5:ENST00000315985.7:ENST00000519636.5:ENST00000522482.5:ENST00000521557.5:ENST00000519439.5:ENST00000521484.5:ENST00000523964.5:ENST00000667651.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	12	94	2	1.55898	1.735835	1.91269	0.0154752	0.0153219	0.108994	0.100173
chr8	31144511	31144608	3729069	0	+	0.515464	(0.515,0.57]	chr8	346676	5	INTRON	INTRON	WRN	ENSG00000165392.11	ENST00000650667.1:ENST00000298139.7:ENST00000521620.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	14	97	2	1.64884	1.7358250000000002	1.82281	0.0137119	0.00590835	0.0949306	0.0694038
chr17	64500986	64501047	6815815	0	-	0.47541	(0.44,0.476]	chr17	673796	1	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DDX5	ENSG00000108654.16	ENST00000225792.10:ENST00000678890.1:ENST00000676601.1:ENST00000676575.1:ENST00000676969.1:ENST00000678810.1:ENST00000585317.2:ENST00000678110.1:ENST00000580026.6:ENST00000678757.1:ENST00000676581.1:ENST00000676785.1:ENST00000585111.2:ENST00000577922.6:ENST00000450599.7:ENST00000678814.1:ENST00000677726.1:ENST00000583212.2:ENST00000579461.2:ENST00000540698.6:ENST00000581230.5:ENST00000581693.5:ENST00000582326.2:ENST00000578491.2:ENST00000578804.5:ENST00000578758.5:ENST00000581237.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	15	118	2	1.38543	1.735735	2.08604	0.0256975	0.00407817	0.120658	0.0580928
chr2	86131406	86131506	822643	0	+	0.48	(0.476,0.515]	chr2	91819	3	SS5_PROX	SS5_PROX:INTRON	PTCD3	ENSG00000132300.19	ENST00000254630.12:ENST00000464541.5:ENST00000476215.5:ENST00000487043.5:ENST00000469585.5:ENST00000493430.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	82	2	1.55865	1.735675	1.9127	0.034348	0.00864134	0.135807	0.0840615
chr6	111275210	111275310	2939938	0	+	0.27	[0,0.28]	chr6	276923	82	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	MFSD4B	ENSG00000173214.7	ENST00000671876.2:ENST00000672750.1:ENST00000672191.1:ENST00000671883.1:ENST00000673446.1:ENST00000444259.2:ENST00000653951.2:ENST00000673245.1:ENST00000673164.1:ENST00000658925.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	79	2	1.37159	1.73529	2.09899	0.0634918	0.0371453	0.198135	0.139304
chr13	106558131	106558231	5648831	0	-	0.27	[0,0.28]	chr13	538150	11	EXON_MRNA	EXON_MRNA:INTRON	ARGLU1	ENSG00000134884.15	ENST00000400198.8:ENST00000472226.2:ENST00000375926.5:ENST00000360629.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	15	178	2	1.67393	1.73523	1.79653	0.0173352	0.0110811	0.104114	0.0930774
chr7	152279635	152279735	3679718	0	-	0.29	(0.28,0.32]	chr7	341617	54	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000684262.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	62	2	1.60333	1.735085	1.86684	0.0605813	0.0413158	0.171122	0.161534
chr4	78830906	78831004	1981933	0	+	0.367347	(0.35,0.378]	chr4	198473	44	INTRON	INTRON	BMP2K	ENSG00000138756.19	ENST00000389010.7:ENST00000502613.3:ENST00000502871.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	97	2	1.51432	1.735055	1.95579	0.0234538	0.016212	0.11867	0.109464
chr9	121181098	121181197	4336199	0	-	0.383838	(0.378,0.408]	chr9	398423	31	UTR3	UTR3:EXON_MRNA	RAB14	ENSG00000119396.11	ENST00000373840.9	protein_coding	protein_coding	protein_coding	protein_coding	9	66	2	1.21	1.735045	2.26009	0.0633399	0.0188651	0.197726	0.108861
chr7	107198195	107198292	3378663	0	+	0.402062	(0.378,0.408]	chr7	316368	12	INTRON	INTRON	HBP1	ENSG00000105856.14	ENST00000468410.5:ENST00000222574.9:ENST00000485846.5:ENST00000463202.5:ENST00000461963.1:ENST00000607681.1:ENST00000463790.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	58	2	1.70953	1.734925	1.76032	0.0721577	0.0190881	0.187433	0.119229
chr5	181255816	181255914	2563425	0	+	0.326531	(0.32,0.35]	chr5	245313	2	EXON_MRNA	EXON_MRNA:INTRON	CTC-338M12.4	ENSG00000233937.8	ENST00000506340.3:ENST00000505151.6:ENST00000511331.5:ENST00000417281.2:ENST00000599439.2	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	11	106	2	1.66804	1.73492	1.8018	0.0271264	0.0103524	0.123904	0.0896588
chr11	66627261	66627360	4810909	0	+	0.353535	(0.35,0.378]	chr11	447878	7	UTR3	UTR3:EXON_MRNA:INTRON	RBM14-RBM4:RBM14	ENSG00000248643.5:ENSG00000239306.5	ENST00000412278.2:ENST00000393979.3:ENST00000511114.1:ENST00000310137.5:ENST00000421355.1:ENST00000500635.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	11	102	2	1.3017	1.73482	2.16794	0.0757564	0.00191705	0.194427	0.0405072
chrX	73840435	73840535	7837928	0	-	0.34	(0.32,0.35]	chrX	799611	31	EXON_LNCRNA	EXON_LNCRNA:INTRON	XIST	ENSG00000229807.13	ENST00000669898.1:ENST00000650627.1:ENST00000434839.3:ENST00000421322.3:ENST00000429829.6:ENST00000647913.2:ENST00000650366.1:ENST00000648607.1:ENST00000650548.1:ENST00000650186.1:ENST00000635841.2:ENST00000650637.1:ENST00000648970.1:ENST00000648991.1:ENST00000648927.2:ENST00000666309.1:ENST00000665247.1:ENST00000602863.2	lncRNA	lncRNA	lncRNA	lncRNA	8	76	2	1.57911	1.734705	1.8903	0.0313129	0.0298043	0.144381	0.129138
chr8	102349987	102350087	4012124	0	-	0.47	(0.44,0.476]	chr8	367218	25	INTRON	INTRON	UBR5	ENSG00000104517.13	ENST00000520539.6:ENST00000220959.8:ENST00000521922.5	protein_coding	protein_coding	protein_coding	protein_coding	19	153	2	1.59359	1.7346750000000002	1.87576	0.0156777	0.00201749	0.101453	0.0415828
chr17	62007810	62007907	6810295	0	-	0.453608	(0.44,0.476]	chr17	672913	4	INTRON	INTRON	MED13	ENSG00000108510.10	ENST00000397786.7	protein_coding	protein_coding	protein_coding	protein_coding	24	193	2	1.58971	1.7346650000000001	1.87962	0.00906765	0.00166775	0.0807743	0.0378607
chr10	5457583	5457681	4384324	0	+	0.255102	[0,0.28]	chr10	404451	7	UTR3	UTR3:EXON_MRNA	NET1	ENSG00000173848.19	ENST00000355029.9:ENST00000380359.3	protein_coding	protein_coding	protein_coding	protein_coding	16	174	2	1.54273	1.7346249999999999	1.92652	0.0204624	0.0129433	0.110999	0.0991015
chr17	32373807	32373907	6598233	0	+	0.31	(0.28,0.32]	chr17	641948	5	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	ZNF207	ENSG00000010244.19	ENST00000394670.9:ENST00000577908.5:ENST00000581531.5:ENST00000579810.2:ENST00000584416.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	86	2	1.40698	1.7345249999999999	2.06207	0.0778529	0.00876132	0.196685	0.0846118
chr17	72829351	72829451	6832312	0	-	0.53	(0.515,0.57]	chr17	675166	51	INTRON	INTRON	SLC39A11	ENSG00000133195.12	ENST00000255559.8:ENST00000542342.6:ENST00000582769.5:ENST00000581581.1:ENST00000579319.1:ENST00000583715.5:ENST00000579491.1:ENST00000584129.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	36	2	1.67758	1.73447	1.79136	0.0638444	0.0471728	0.177811	0.168737
chr16	221646	221746	6426112	0	-	0.48	(0.476,0.515]	chr16	617444	5	INTRON	INTRON	LUC7L	ENSG00000007392.17	ENST00000337351.8:ENST00000426094.5:ENST00000397783.5:ENST00000629543.2:ENST00000490762.5:ENST00000293872.13:ENST00000419516.5:ENST00000397780.5:ENST00000418978.5:ENST00000430864.5:ENST00000443357.5:ENST00000494366.5:ENST00000469109.1:ENST00000428363.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	42	2	1.72558	1.734375	1.74317	0.0767648	0.0396373	0.196164	0.161534
chr1	220128833	220128932	319135	0	+	0.292929	(0.28,0.32]	chr1	36543	16	INTRON	INTRON	IARS2	ENSG00000067704.10	ENST00000366922.3:ENST00000490891.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	120	2	1.54831	1.73431	1.92031	0.0186314	0.0182101	0.117449	0.107833
chr1	174268925	174269024	258210	0	+	0.515152	(0.476,0.515]	chr1	30773	160	INTRON	INTRON	RABGAP1L	ENSG00000152061.24	ENST00000357444.10:ENST00000251507.8:ENST00000681986.1:ENST00000457696.1	protein_coding	protein_coding	protein_coding	protein_coding	11	90	2	1.62505	1.734255	1.84346	0.0210589	0.0114152	0.112542	0.095586
chr5	154787567	154787665	2527321	0	+	0.377551	(0.35,0.378]	chr5	241615	10	INTRON	INTRON	LARP1	ENSG00000155506.19	ENST00000687700.1:ENST00000336314.9:ENST00000690816.1:ENST00000518297.6:ENST00000517616.5:ENST00000521577.1:ENST00000519931.5:ENST00000524248.5:ENST00000685946.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	46	2	1.65083	1.7342499999999998	1.81767	0.0640429	0.0521072	0.177882	0.177022
chr8	102253528	102253624	4011085	0	-	0.364583	(0.35,0.378]	chr8	366939	14	UTR3	UTR3:EXON_MRNA	UBR5	ENSG00000104517.13	ENST00000520539.6	protein_coding	protein_coding	protein_coding	protein_coding	5	46	2	1.65083	1.7342499999999998	1.81767	0.0640429	0.0521072	0.177882	0.177022
chr2	61529159	61529259	1131139	0	-	0.29	(0.28,0.32]	chr2	121636	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	XPO1	ENSG00000082898.19	ENST00000676553.1:ENST00000677556.1:ENST00000677814.1:ENST00000676771.1:ENST00000677803.1:ENST00000677239.1:ENST00000678790.1:ENST00000677928.1:ENST00000678182.1:ENST00000677150.1:ENST00000678172.1:ENST00000678360.1:ENST00000678081.1:ENST00000676889.1:ENST00000676783.1:ENST00000679035.1:ENST00000677422.1:ENST00000677417.1:ENST00000677813.1:ENST00000676999.1:ENST00000676667.1:ENST00000678263.1:ENST00000678877.1:ENST00000677933.1:ENST00000680228.1:ENST00000401558.7:ENST00000428210.5:ENST00000677290.1:ENST00000677850.1:ENST00000451765.6:ENST00000676789.1:ENST00000678741.1:ENST00000404992.6:ENST00000406957.5:ENST00000443240.5:ENST00000420673.6:ENST00000481214.1:ENST00000495003.1:ENST00000449444.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	80	2	1.70551	1.73422	1.76293	0.0766478	0.0159371	0.196164	0.109464
chr22	19510281	19510380	7477152	0	+	0.474747	(0.44,0.476]	chr22	762458	12	INTRON	INTRON	CDC45	ENSG00000093009.11	ENST00000407835.6:ENST00000437685.6:ENST00000438587.6:ENST00000672837.1:ENST00000263201.7:ENST00000404724.7:ENST00000471470.1:ENST00000671972.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	14	115	2	1.61148	1.73422	1.85696	0.0123345	0.0107727	0.0920575	0.0914141
chr9	126837810	126837910	4199681	0	+	0.34	(0.32,0.35]	chr9	383330	40	UTR3	UTR3:EXON_MRNA	ZBTB43	ENSG00000169155.10	ENST00000449886.5:ENST00000373464.5	protein_coding	protein_coding	protein_coding	protein_coding	8	76	2	1.54135	1.7342	1.92705	0.0353776	0.0267365	0.150752	0.123349
chr11	64312063	64312162	4802951	0	+	0.525253	(0.515,0.57]	chr11	445644	42	INTRON	INTRON	ESRRA	ENSG00000173153.17	ENST00000406310.6:ENST00000000442.11:ENST00000677967.1:ENST00000539594.5:ENST00000405666.5	protein_coding	protein_coding	protein_coding	protein_coding	6	44	2	1.60221	1.734155	1.8661	0.0581855	0.0274846	0.188704	0.123904
chr1	25861952	25862046	404256	0	-	0.37234	(0.35,0.378]	chr1	48519	6	UTR3	UTR3:EXON_MRNA	PAQR7	ENSG00000182749.6	ENST00000675840.1:ENST00000374296.4	protein_coding	protein_coding	protein_coding	protein_coding	9	83	2	1.69092	1.73414	1.77736	0.0239575	0.0225073	0.124921	0.11951
chr7	105097359	105097458	3375483	0	+	0.434343	(0.408,0.44]	chr7	315967	57	INTRON	INTRON	KMT2E	ENSG00000005483.22	ENST00000257745.9:ENST00000334884.9:ENST00000311117.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	59	2	1.53812	1.73407	1.93002	0.0501609	0.022095	0.156383	0.123903
chr2	168860599	168860699	1259483	0	-	0.45	(0.44,0.476]	chr2	133363	260	INTRON	INTRON	SPC25	ENSG00000152253.9	ENST00000479309.6	protein_coding	processed_transcript	protein_coding	processed_transcript	5	42	2	1.62896	1.733975	1.83899	0.0589734	0.0546679	0.182674	0.167915
chr4	32068976	32069076	1942138	0	+	0.47	(0.44,0.476]	chr4	194727	708	INTRON	INTRON	LINC02506	ENSG00000251129.3	ENST00000662669.1:ENST00000665582.2:ENST00000667252.2:ENST00000660373.2:ENST00000684849.1:ENST00000513211.2:ENST00000659613.1:ENST00000657576.1:ENST00000686730.1:ENST00000685407.1:ENST00000685455.1:ENST00000655951.1	lncRNA	lncRNA	lncRNA	lncRNA	5	42	2	1.62896	1.733975	1.83899	0.0589734	0.0546679	0.182674	0.167915
chr8	105445777	105445877	3838518	0	+	0.5	(0.476,0.515]	chr8	354059	10	INTRON	INTRON	ZFPM2	ENSG00000169946.14	ENST00000407775.7:ENST00000520492.5:ENST00000520027.5:ENST00000524235.5:ENST00000511341.6:ENST00000522160.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	65	2	1.44826	1.733895	2.01953	0.0482164	0.0163662	0.153146	0.109586
chr9	135948902	135949001	4372444	0	-	0.525253	(0.515,0.57]	chr9	402541	6	INTRON	INTRON	UBAC1	ENSG00000130560.9	ENST00000371756.4:ENST00000478485.1:ENST00000486258.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	77	2	1.64662	1.7338749999999998	1.82113	0.0178544	0.0118311	0.106151	0.0962115
chr8	102408675	102408775	4012716	0	-	0.49	(0.476,0.515]	chr8	367237	467	INTRON	INTRON	UBR5	ENSG00000104517.13	ENST00000520539.6:ENST00000220959.8:ENST00000521922.5	protein_coding	protein_coding	protein_coding	protein_coding	12	97	2	1.19752	1.73383	2.27014	0.0689479	0.00172923	0.184298	0.0384338
chr19	808962	809062	6992225	0	+	0.41	(0.408,0.44]	chr19	692270	2	SS5_PROX	SS5_PROX:INTRON	PTBP1	ENSG00000011304.22	ENST00000635647.1:ENST00000627714.2:ENST00000676227.1:ENST00000677277.1:ENST00000349038.8:ENST00000586944.5:ENST00000356948.11:ENST00000394601.8:ENST00000679114.1:ENST00000350092.8:ENST00000621737.4:ENST00000585932.5:ENST00000585856.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	83	2	1.50203	1.733685	1.96534	0.0216499	0.0193894	0.119831	0.11491
chr21	22222512	22222612	7384593	0	+	0.35	(0.32,0.35]	chr21	752727	93	INTRON	INTRON	ENSG00000226043	ENSG00000226043.2	ENST00000667099.1:ENST00000654607.1:ENST00000444130.1	lncRNA	lncRNA	lncRNA	lncRNA	9	83	2	1.40199	1.73366	2.06533	0.0432025	0.0174225	0.162255	0.10453
chrX	44894586	44894686	7648816	0	+	0.36	(0.35,0.378]	chrX	782726	202	INTRON	INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000675440.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000621147.5:ENST00000475233.1:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	114	2	1.71907	1.7335150000000001	1.74796	0.0218101	0.00734467	0.11491	0.0765441
chr8	26301278	26301376	3716193	0	+	0.316327	(0.28,0.32]	chr8	345368	23	INTRON	INTRON	PPP2R2A	ENSG00000221914.11	ENST00000380737.8:ENST00000520329.5:ENST00000518254.5:ENST00000524169.5:ENST00000518397.5:ENST00000522535.5:ENST00000665949.1:ENST00000522150.5:ENST00000523473.5:ENST00000521095.5:ENST00000660435.1:ENST00000523925.5:ENST00000524099.5:ENST00000315985.7:ENST00000519636.5:ENST00000522482.5:ENST00000521557.5:ENST00000519439.5:ENST00000521484.5:ENST00000523964.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	92	2	1.50303	1.733395	1.96376	0.0480066	0.0220301	0.153019	0.123836
chr9	130742154	130742254	4214146	0	+	0.49	(0.476,0.515]	chr9	386427	273	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000393293.4	protein_coding	protein_coding	protein_coding	protein_coding	14	109	2	1.56302	1.7333150000000002	1.90361	0.0127429	0.0102027	0.0987441	0.0850389
chr7	25121325	25121424	3505870	0	-	0.50505	(0.476,0.515]	chr7	327122	28	UTR3	UTR3:EXON_MRNA	CYCS	ENSG00000172115.9	ENST00000305786.7	protein_coding	protein_coding	protein_coding	protein_coding	7	59	2	1.62782	1.73331	1.8388	0.0564473	0.0274391	0.184423	0.123904
chr9	130745254	130745354	4214177	0	+	0.49	(0.476,0.515]	chr9	386427	304	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000393293.4	protein_coding	protein_coding	protein_coding	protein_coding	9	78	2	1.53534	1.73329	1.93124	0.0476737	0.00916342	0.170116	0.0812949
chr7	66956694	66956792	3326595	0	+	0.591837	(0.57,1]	chr7	309376	13	UTR3	UTR3:EXON_MRNA	TMEM248	ENSG00000106609.16	ENST00000341567.8	protein_coding	protein_coding	protein_coding	protein_coding	21	84	2	1.45347	1.733275	2.01308	0.00988003	0.001464	0.0838372	0.0350622
chr18	9111956	9112055	6868686	0	+	0.353535	(0.35,0.378]	chr18	680510	66	INTRON	INTRON	NDUFV2	ENSG00000178127.13	ENST00000577703.1:ENST00000318388.11:ENST00000583375.5:ENST00000400033.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	41	366	2	1.46466	1.73318	2.0017	0.0144659	2.3803e-4	0.0974207	0.0136264
chr1	201996164	201996263	292644	0	+	0.484848	(0.476,0.515]	chr1	33710	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	RNPEP	ENSG00000176393.11	ENST00000481780.5:ENST00000295640.9:ENST00000367286.7:ENST00000487116.5:ENST00000492587.5:ENST00000471105.5:ENST00000447312.5:ENST00000478617.5:ENST00000479726.5:ENST00000492849.5:ENST00000449524.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	68	2	1.53534	1.733165	1.93099	0.0476737	0.0140312	0.170116	0.0959618
chr1	32385701	32385797	415106	0	-	0.46875	(0.44,0.476]	chr1	50082	13	INTRON	INTRON	BSDC1	ENSG00000160058.19	ENST00000455895.7:ENST00000444377.5:ENST00000341071.11:ENST00000526031.5:ENST00000419121.6:ENST00000446293.6:ENST00000373520.8:ENST00000527513.5:ENST00000527163.5:ENST00000530485.1:ENST00000474414.5:ENST00000530876.5:ENST00000530753.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	98	2	1.4317	1.7330649999999999	2.03443	0.0304668	0.00616397	0.143385	0.067653
chr1	173936438	173936538	587160	0	-	0.47	(0.44,0.476]	chr1	70649	55	UTR3	UTR3:EXON_MRNA	RC3H1	ENSG00000135870.12	ENST00000367696.7:ENST00000258349.8	protein_coding	protein_coding	protein_coding	protein_coding	20	158	2	1.61562	1.733	1.85038	0.00637105	0.00545325	0.0724821	0.0647375
chr6	87227631	87227730	2913986	0	+	0.222222	[0,0.28]	chr6	275311	38	INTRON	INTRON	ZNF292	ENSG00000188994.13	ENST00000369577.8:ENST00000518845.1:ENST00000339907.8:ENST00000496806.2	protein_coding	protein_coding	protein_coding	protein_coding	6	76	2	1.66929	1.73298	1.79667	0.0537506	0.0445299	0.180803	0.149888
chr10	101789110	101789209	4680666	0	-	0.414141	(0.408,0.44]	chr10	431944	12	INTRON	INTRON	OGA	ENSG00000198408.14	ENST00000439817.5:ENST00000361464.8:ENST00000357797.9:ENST00000482611.5:ENST00000494347.5:ENST00000479811.5:ENST00000461645.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	16	131	2	1.52028	1.732935	1.94559	0.0250212	0.00211362	0.12011	0.0425644
chr12	69272084	69272183	5163843	0	+	0.333333	(0.32,0.35]	chr12	489054	27	UTR3	UTR3:EXON_MRNA	CPSF6	ENSG00000111605.18	ENST00000435070.7:ENST00000650046.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	15	128	2	1.15819	1.7329249999999998	2.30766	0.0493023	0.00406148	0.174117	0.0558167
chr12	57781144	57781244	5148685	0	+	0.53	(0.515,0.57]	chr12	487159	6	UTR3	UTR3:EXON_MRNA	EEF1AKMT3	ENSG00000123427.17	ENST00000300209.13:ENST00000333012.5	protein_coding	protein_coding	protein_coding	protein_coding	7	52	2	1.60221	1.732915	1.86362	0.0581855	0.0164561	0.188704	0.102235
chr16	14916152	14916250	6304711	0	+	0.520408	(0.515,0.57]	chr16	603076	39	INTRON	INTRON	PKD1P3	ENSG00000183458.14	ENST00000534164.6	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	9	63	2	1.47702	1.73291	1.9888	0.0421022	0.00963364	0.148082	0.086971
chr5	65999659	65999759	2371583	0	+	0.31	(0.28,0.32]	chr5	228504	44	INTRON	INTRON	ERBIN	ENSG00000112851.15	ENST00000380943.6:ENST00000416865.6:ENST00000380935.5:ENST00000284037.10:ENST00000380938.6:ENST00000511297.5:ENST00000506030.5:ENST00000508515.1	protein_coding	protein_coding	protein_coding	protein_coding	7	70	2	1.59898	1.73291	1.86684	0.0605813	0.030453	0.171122	0.143385
chr18	32113444	32113544	6887478	0	+	0.34	(0.32,0.35]	chr18	682668	3	SS3_PROX	SS3_PROX:INTRON	RNF138	ENSG00000134758.14	ENST00000261593.8:ENST00000585103.5:ENST00000578914.1:ENST00000578107.5:ENST00000583733.1:ENST00000257190.9:ENST00000580499.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	9	85	2	1.69107	1.7328800000000002	1.77469	0.0517392	0.0115283	0.159306	0.0960498
chr1	32023630	32023729	62740	0	+	0.424242	(0.408,0.44]	chr1	7939	89	INTRON	INTRON	KHDRBS1	ENSG00000121774.18	ENST00000327300.12:ENST00000307714.12:ENST00000492989.1:ENST00000484270.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	52	2	1.6306	1.732805	1.83501	0.0544158	0.0323448	0.182272	0.133003
chr6	44248007	44248079	2872838	0	+	0.458333	(0.44,0.476]	chr6	272578	3	UTR5	UTR5:EXON_MRNA:INTRON	HSP90AB1	ENSG00000096384.20	ENST00000620073.4:ENST00000353801.7:ENST00000371646.10:ENST00000371554.2	protein_coding	protein_coding	protein_coding	protein_coding	17	126	2	1.273	1.73265	2.1923	0.0294642	0.0043698	0.128055	0.0604104
chr17	47660326	47660423	6622683	0	+	0.42268	(0.408,0.44]	chr17	646019	13	INTRON	INTRON	KPNB1	ENSG00000108424.11	ENST00000535458.6:ENST00000583648.6:ENST00000290158.9:ENST00000577918.5:ENST00000540627.5:ENST00000582097.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	43	2	1.53263	1.7325300000000001	1.93243	0.0733439	0.0441194	0.190051	0.162255
chr11	881931	882030	4890175	0	-	0.454545	(0.44,0.476]	chr11	457979	67	INTRON	INTRON	CHID1	ENSG00000177830.18	ENST00000323578.13:ENST00000449825.5:ENST00000454838.6:ENST00000529539.5:ENST00000534207.5:ENST00000429789.6:ENST00000528581.5:ENST00000436108.6:ENST00000528521.1:ENST00000526714.5:ENST00000528534.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	11	94	2	1.58453	1.7325249999999999	1.88052	0.0293513	0.00808369	0.142102	0.0766625
chr7	128980624	128980718	3635827	0	-	0.446809	(0.44,0.476]	chr7	338064	2	INTRON	INTRON	TNPO3	ENSG00000064419.14	ENST00000627585.2:ENST00000265388.10:ENST00000471234.5:ENST00000482320.5:ENST00000471166.1	protein_coding	protein_coding	protein_coding	protein_coding	7	57	2	1.45853	1.73231	2.00609	0.0470887	0.0360127	0.152355	0.152251
chr5	141320691	141320784	2739093	0	-	0.666667	(0.57,1]	chr5	257998	8	UTR5	UTR5:EXON_MRNA	TAF7	ENSG00000178913.9	ENST00000313368.8:ENST00000624761.2	protein_coding	protein_coding	protein_coding	protein_coding	13	53	2	1.62927	1.7322600000000001	1.83525	0.0110377	0.0105866	0.091206400000000007	0.0873897
chr5	79637357	79637456	2398981	0	+	0.323232	(0.32,0.35]	chr5	231707	135	INTRON	INTRON	TENT2	ENSG00000164329.14	ENST00000423041.6:ENST00000504233.5:ENST00000453514.6:ENST00000428308.6:ENST00000296783.7	protein_coding	protein_coding	protein_coding	protein_coding	7	63	2	1.42176	1.732065	2.04237	0.0511006	0.0375542	0.176696	0.140222
chr17	51104572	51104672	6796855	0	-	0.52	(0.515,0.57]	chr17	671024	245	INTRON	INTRON	SPAG9	ENSG00000008294.22	ENST00000262013.12:ENST00000505279.5:ENST00000357122.8	protein_coding	protein_coding	protein_coding	protein_coding	10	65	2	1.44412	1.7319499999999999	2.01978	0.0281447	0.0165522	0.137182	0.102621
chr1	173867959	173867991	587093	0	-	0.53125	(0.515,0.57]	chr1	70641	1	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	GAS5	ENSG00000234741.9	ENST00000687189.1:ENST00000689238.1:ENST00000687549.1:ENST00000687435.1:ENST00000687987.1:ENST00000686995.1:ENST00000689958.1:ENST00000687063.1:ENST00000689895.1:ENST00000690228.1:ENST00000688573.1:ENST00000412059.6:ENST00000685107.1:ENST00000449289.6:ENST00000691213.1:ENST00000436285.6:ENST00000436656.6:ENST00000422008.6:ENST00000691137.1:ENST00000450589.6:ENST00000448718.6:ENST00000693348.1:ENST00000690349.1:ENST00000690761.1:ENST00000687022.1:ENST00000686878.1:ENST00000430245.5:ENST00000422183.6:ENST00000442067.6:ENST00000693450.1:ENST00000690448.1:ENST00000416952.6:ENST00000688895.1:ENST00000687710.1:ENST00000693030.1:ENST00000692671.1:ENST00000688557.1:ENST00000456812.7:ENST00000431268.5:ENST00000455838.6:ENST00000449589.6:ENST00000444470.6:ENST00000693469.1:ENST00000685758.1:ENST00000458220.2:ENST00000687409.1:ENST00000688952.1:ENST00000689860.1:ENST00000686918.1:ENST00000691056.1:ENST00000689469.1:ENST00000685039.1:ENST00000414075.6:ENST00000692994.1:ENST00000691982.1:ENST00000690172.1:ENST00000686460.1:ENST00000691712.1:ENST00000685159.1:ENST00000685008.1:ENST00000452197.5:ENST00000650796.1:ENST00000693521.1:ENST00000690941.1:ENST00000693459.1:ENST00000686231.1:ENST00000684949.1:ENST00000425771.6:ENST00000456293.5:ENST00000443799.5:ENST00000421068.5	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	30	205	2	1.69411	1.73193	1.76975	0.00290456	0.00193027	0.0478522	0.0407532
chr7	6035125	6035225	3475994	0	-	0.28	[0,0.28]	chr7	325180	57	INTRON	INTRON	EIF2AK1	ENSG00000086232.13	ENST00000199389.11	protein_coding	protein_coding	protein_coding	protein_coding	16	195	2	1.42648	1.731925	2.03737	0.0453147	0.002337	0.149888	0.0442989
chr1	168027728	168027828	249414	0	+	0.3	(0.28,0.32]	chr1	29620	38	INTRON	INTRON	DCAF6	ENSG00000143164.16	ENST00000432587.6:ENST00000367843.7:ENST00000367840.4:ENST00000312263.10	protein_coding	protein_coding	protein_coding	protein_coding	6	65	2	1.56134	1.7319149999999999	1.90249	0.0740624	0.0261803	0.191153	0.133676
chr1	86949385	86949485	153940	0	+	0.38	(0.378,0.408]	chr1	16952	332	INTRON	INTRON	HS2ST1	ENSG00000153936.18	ENST00000370550.10:ENST00000370551.8:ENST00000687893.1:ENST00000693745.1:ENST00000689904.1:ENST00000690674.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	77	2	1.67942	1.73178	1.78414	0.0336706	0.0144669	0.134145	0.105142
chr2	107703620	107703720	1205585	0	-	0.34	(0.32,0.35]	chr2	128525	3	SS3_PROX	SS3_PROX:INTRON	LINC01885:ENSG00000286769	ENSG00000237880.2:ENSG00000286769.1	ENST00000654481.1:ENST00000669817.1	lncRNA	lncRNA	lncRNA	lncRNA	13	125	2	1.69257	1.7317399999999998	1.77091	0.0146308	0.0122626	0.0982604	0.0969406
chr22	38491755	38491855	7587936	0	-	0.47	(0.44,0.476]	chr22	776723	24	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	DDX17	ENSG00000100201.23	ENST00000403230.3:ENST00000396821.8:ENST00000216019.11:ENST00000475004.6:ENST00000432525.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	48	384	2	1.6179	1.73163	1.84536	0.00311172	7.58582e-4	0.0498063	0.0252618
chr3	152326419	152326519	1535563	0	+	0.38	(0.378,0.408]	chr3	159996	241	INTRON	INTRON	MBNL1	ENSG00000152601.18	ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000495875.6:ENST00000324210.10:ENST00000493459.5:ENST00000459747.1:ENST00000460591.5:ENST00000545754.5:ENST00000357472.7:ENST00000324196.9:ENST00000498502.5:ENST00000463374.5:ENST00000485910.5:ENST00000465907.6:ENST00000492948.5:ENST00000485509.5:ENST00000464596.5	protein_coding	protein_coding	protein_coding	protein_coding	13	95	2	1.29019	1.7315749999999999	2.17296	0.0325614	0.0110512	0.145164	0.0873897
chr22	21792870	21792969	7560635	0	-	0.262626	[0,0.28]	chr22	773370	37	INTRON	INTRON	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	8	87	2	1.40145	1.731385	2.06132	0.0475782	0.0408268	0.169854	0.1451
chr12	74540087	74540186	5173121	0	+	0.343434	(0.32,0.35]	chr12	489969	18	UTR3	UTR3:EXON_MRNA	ATXN7L3B	ENSG00000253719.4	ENST00000519948.4	protein_coding	protein_coding	protein_coding	protein_coding	17	150	2	1.10424	1.73137	2.3585	0.0546216	0.00198682	0.182649	0.0404678
chr19	12533668	12533768	7139778	0	-	0.42	(0.408,0.44]	chr19	720329	8	INTRON	INTRON	ZNF564	ENSG00000249709.8	ENST00000339282.12:ENST00000427105.1:ENST00000596193.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	51	2	1.53263	1.731325	1.93002	0.0733439	0.022095	0.190051	0.123903
chr10	915196	915295	4542422	0	-	0.535354	(0.515,0.57]	chr10	419304	118	INTRON	INTRON	LARP4B	ENSG00000107929.16	ENST00000316157.8:ENST00000690516.1:ENST00000476529.5:ENST00000406525.6:ENST00000481118.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	18	114	2	1.24366	1.73129	2.21892	0.0292813	0.00198472	0.128055	0.0411469
chr13	32630764	32630864	5465751	0	+	0.44	(0.408,0.44]	chr13	523717	438	INTRON	INTRON	PDS5B	ENSG00000083642.19	ENST00000315596.15:ENST00000482955.5:ENST00000498550.5:ENST00000450460.5:ENST00000493653.1:ENST00000466078.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	51	2	1.58763	1.731265	1.8749	0.0639217	0.0264246	0.177824	0.133676
chr9	37127042	37127142	4117723	0	+	0.41	(0.408,0.44]	chr9	375371	1	SS5_PROX	SS5_PROX:INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000322831.6:ENST00000461038.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	15	110	2	1.39325	1.731065	2.06888	0.0192077	0.00864911	0.119831	0.0787025
chr22	23215139	23215239	7483553	0	+	0.37	(0.35,0.378]	chr22	763541	154	INTRON	INTRON	BCR	ENSG00000186716.21	ENST00000479188.5:ENST00000359540.7:ENST00000305877.13:ENST00000463770.5:ENST00000487679.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	66	2	1.63291	1.73089	1.82887	0.0584878	0.0289396	0.189395	0.1274
chr3	177192365	177192465	1872398	0	-	0.3	(0.28,0.32]	chr3	187438	211	INTRON	INTRON	TBL1XR1	ENSG00000177565.18	ENST00000457928.7:ENST00000430069.5:ENST00000673974.1:ENST00000352800.10:ENST00000422442.6:ENST00000428970.5:ENST00000424913.5:ENST00000437738.5:ENST00000431421.5:ENST00000635794.1:ENST00000630796.2:ENST00000450267.5:ENST00000630833.2:ENST00000431674.5:ENST00000422066.5:ENST00000443315.5:ENST00000627825.2:ENST00000427349.5:ENST00000413084.5:ENST00000637137.1:ENST00000491623.2:ENST00000637544.1:ENST00000636187.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	20	205	2	1.51334	1.730865	1.94839	0.0125397	0.00535058	0.0979364	0.0642754
chr14	103484125	103484222	5826652	0	+	0.340206	(0.32,0.35]	chr14	552919	17	INTRON	INTRON	MARK3	ENSG00000075413.19	ENST00000678179.1:ENST00000676838.1:ENST00000677348.1:ENST00000677404.1:ENST00000676694.1:ENST00000676938.1:ENST00000678619.1:ENST00000676897.1:ENST00000677214.1:ENST00000677942.1:ENST00000676830.1:ENST00000678999.1:ENST00000677228.1:ENST00000556744.2:ENST00000677104.1:ENST00000679330.1:ENST00000560417.6:ENST00000440884.7:ENST00000677035.1:ENST00000678022.1:ENST00000677560.1:ENST00000561314.6:ENST00000429436.7:ENST00000677118.1:ENST00000676564.1:ENST00000678169.1:ENST00000678175.1:ENST00000678897.1:ENST00000678278.1:ENST00000676645.1:ENST00000677829.1:ENST00000678302.1:ENST00000677133.1:ENST00000678207.1:ENST00000677360.1:ENST00000676905.1:ENST00000678343.1:ENST00000677347.1:ENST00000678071.1:ENST00000677432.1:ENST00000678237.1:ENST00000677604.1:ENST00000676518.1:ENST00000677051.1:ENST00000677857.1:ENST00000677869.1:ENST00000416682.6:ENST00000303622.13:ENST00000216288.11:ENST00000679105.1:ENST00000553942.5:ENST00000335102.9:ENST00000678091.1:ENST00000561071.5:ENST00000676745.1:ENST00000554627.5:ENST00000559274.1:ENST00000679299.1:ENST00000678661.1:ENST00000677352.1:ENST00000676944.1:ENST00000677023.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	106	2	1.53859	1.730855	1.92312	0.0534261	0.00462032	0.162935	0.062717
chr7	156886170	156886270	3687948	0	-	0.47	(0.44,0.476]	chr7	342096	489	INTRON	INTRON	LMBR1	ENSG00000105983.23	ENST00000353442.10:ENST00000415428.5:ENST00000454132.5:ENST00000434503.5:ENST00000430278.5:ENST00000434278.5:ENST00000444719.5:ENST00000461469.5:ENST00000414218.1:ENST00000434453.1:ENST00000498034.5:ENST00000433968.5:ENST00000485985.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	74	2	1.60467	1.730815	1.85696	0.0411383	0.0107727	0.1451	0.0920575
chr3	141900736	141900835	1526316	0	+	0.464646	(0.44,0.476]	chr3	159005	228	INTRON	INTRON	ATP1B3	ENSG00000069849.11	ENST00000475483.5:ENST00000465172.5:ENST00000286371.8:ENST00000466678.5:ENST00000462082.1:ENST00000495216.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	59	2	1.64563	1.7307899999999998	1.81595	0.0363922	0.0317953	0.14477	0.138959
chr3	195278031	195278131	1894230	0	-	0.38	(0.378,0.408]	chr3	189532	34	UTR3	UTR3:EXON_MRNA	ACAP2	ENSG00000114331.16	ENST00000326793.11	protein_coding	protein_coding	protein_coding	protein_coding	35	277	2	1.47699	1.730775	1.98456	0.0054257	0.00157168	0.0666592	0.0361658
chr17	62048153	62048253	6810709	0	-	0.53	(0.515,0.57]	chr17	672946	122	INTRON	INTRON	MED13	ENSG00000108510.10	ENST00000397786.7	protein_coding	protein_coding	protein_coding	protein_coding	31	187	2	1.34483	1.73072	2.11661	0.00893868	0.00119563	0.0849778	0.0315806
chr9	130699982	130700080	4213773	0	+	0.357143	(0.35,0.378]	chr9	386401	7	UTR3	UTR3:EXON_MRNA:INTRON	EXOSC2	ENSG00000130713.17	ENST00000491115.7:ENST00000686102.1:ENST00000691284.1:ENST00000685137.1:ENST00000495699.3:ENST00000688967.1:ENST00000691104.1:ENST00000691926.1:ENST00000693435.1:ENST00000688258.1:ENST00000372358.10:ENST00000546165.6:ENST00000372352.7:ENST00000687420.1:ENST00000693011.1:ENST00000687051.1:ENST00000691425.1:ENST00000693610.1:ENST00000692794.1:ENST00000689890.1:ENST00000688350.1:ENST00000686106.1:ENST00000372351.7:ENST00000372350.7:ENST00000685277.1:ENST00000688364.1:ENST00000689662.1:ENST00000430138.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	23	195	2	1.25211	1.73069	2.20927	0.0305751	7.62323e-4	0.131107	0.0253674
chr1	39873362	39873462	428171	0	-	0.39	(0.378,0.408]	chr1	52028	73	INTRON	INTRON	TRIT1	ENSG00000043514.17	ENST00000316891.10:ENST00000648678.1:ENST00000537440.5:ENST00000372818.5:ENST00000462797.5:ENST00000441669.6:ENST00000495175.6:ENST00000491865.5:ENST00000541099.5:ENST00000492612.6:ENST00000489945.5:ENST00000486825.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	10	79	2	1.3234	1.730685	2.13797	0.0443586	0.0124882	0.162443	0.0923444
chr4	39710967	39711067	1953120	0	+	0.3	(0.28,0.32]	chr4	195630	122	INTRON	INTRON	UBE2K	ENSG00000078140.14	ENST00000510934.5:ENST00000261427.10:ENST00000438068.6:ENST00000513231.5:ENST00000503368.5:ENST00000445950.2:ENST00000510719.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	13	133	2	1.59221	1.7305799999999998	1.86895	0.0157727	0.0151045	0.109464	0.0994339
chr12	110300331	110300431	5226293	0	+	0.47	(0.44,0.476]	chr12	495250	32	INTRON	INTRON	ATP2A2	ENSG00000174437.18	ENST00000308664.10:ENST00000539276.7:ENST00000377685.9:ENST00000548169.2:ENST00000550248.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	58	2	1.66462	1.73056	1.7965	0.0520247	0.0205549	0.159508	0.122348
chr6	157013998	157014098	3009533	0	+	0.39	(0.378,0.408]	chr6	281130	285	INTRON	INTRON	ARID1B	ENSG00000049618.24	ENST00000346085.10:ENST00000636930.2:ENST00000647938.1:ENST00000350026.10:ENST00000674298.1:ENST00000674190.1:ENST00000414678.7:ENST00000319584.11:ENST00000452544.2:ENST00000637887.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	50	2	1.45712	1.73055	2.00398	0.0597975	0.0393906	0.189982	0.143072
chr4	119300335	119300435	2230155	0	-	0.47	(0.44,0.476]	chr4	218435	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	C4orf3	ENSG00000164096.13	ENST00000399075.6:ENST00000504110.2	protein_coding	protein_coding	protein_coding	protein_coding	11	83	2	1.55725	1.73053	1.90381	0.0260626	0.0155922	0.122153	0.109452
chr7	152243591	152243690	3679347	0	-	0.474747	(0.44,0.476]	chr7	341573	44	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000681033.1:ENST00000679645.1:ENST00000684550.1:ENST00000489110.2:ENST00000683490.1:ENST00000680479.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	10	81	2	1.4592	1.730425	2.00165	0.0342963	0.0109867	0.147255	0.0873897
chr9	37184412	37184512	4118299	0	+	0.47	(0.44,0.476]	chr9	375384	243	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000322831.6:ENST00000461038.5:ENST00000488607.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	58	2	1.42812	1.7303899999999999	2.03266	0.0673866	0.0155853	0.183355	0.109411
chr1	54392871	54392970	463626	0	-	0.535354	(0.515,0.57]	chr1	55784	362	INTRON	INTRON	SSBP3	ENSG00000157216.16	ENST00000610401.5:ENST00000357475.9:ENST00000371319.8:ENST00000417664.7:ENST00000533946.6:ENST00000371320.8:ENST00000525990.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	50	2	1.44089	1.730335	2.01978	0.0617046	0.0165522	0.193423	0.102621
chr12	46365689	46365785	5316626	0	-	0.427083	(0.408,0.44]	chr12	505796	1	INTRON	INTRON	SLC38A2	ENSG00000134294.14	ENST00000256689.10:ENST00000549258.5:ENST00000612232.1:ENST00000548870.5:ENST00000547252.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	11	88	2	1.36246	1.73032	2.09818	0.0386802	0.00772939	0.159946	0.0757122
chr12	57061145	57061245	5336666	0	-	0.32	(0.28,0.32]	chr12	510344	2	SS3_PROX	SS3_PROX:INTRON	NEMP1	ENSG00000166881.10	ENST00000300128.9:ENST00000379391.7:ENST00000554340.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	66	2	1.6633	1.730255	1.79721	0.0522231	0.0408024	0.177274	0.1451
chrX	154737781	154737881	7915187	0	-	0.52	(0.515,0.57]	chrX	806107	211	INTRON	INTRON	GAB3	ENSG00000160219.12	ENST00000496390.5:ENST00000424127.3:ENST00000369575.7:ENST00000369568.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	85	2	1.29999	1.7302499999999998	2.16051	0.0358111	0.0046825	0.138811	0.0631419
chr10	17237512	17237593	4398664	0	+	0.320988	(0.32,0.35]	chr10	406100	4	UTR3	UTR3:EXON_MRNA	VIM	ENSG00000026025.16	ENST00000544301.7:ENST00000224237.9:ENST00000487938.5:ENST00000469543.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	19	160	2	1.22324	1.7301900000000001	2.23714	0.0311678	0.00333584	0.143844	0.0512081
chr7	101826373	101826473	3366452	0	+	0.5	(0.476,0.515]	chr7	315215	70	INTRON	INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000497815.5:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000607092.1:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000558469.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	14	112	2	1.41248	1.730125	2.04777	0.030051	0.00319642	0.129138	0.05208
chr22	19101966	19102065	7551810	0	-	0.434343	(0.408,0.44]	chr22	771903	121	INTRON	INTRON	DGCR2	ENSG00000070413.20	ENST00000537045.5:ENST00000545799.5:ENST00000263196.12:ENST00000389262.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	88	2	1.30098	1.72996	2.15894	0.0513909	0.00504142	0.158422	0.0646039
chr16	23494778	23494878	6464427	0	-	0.56	(0.515,0.57]	chr16	623892	4	SS3_PROX	SS3_PROX:INTRON	GGA2	ENSG00000103365.15	ENST00000309859.8:ENST00000567468.5:ENST00000570111.5:ENST00000568799.1:ENST00000563494.5:ENST00000569300.5:ENST00000569189.2:ENST00000563047.1:ENST00000562944.5:ENST00000562117.1:ENST00000566651.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	46	2	1.44237	1.72987	2.01737	0.0456196	0.0352218	0.164236	0.137535
chr8	102849288	102849387	4013087	0	-	0.454545	(0.44,0.476]	chr8	367328	52	INTRON	INTRON	AZIN1	ENSG00000155096.15	ENST00000681985.1:ENST00000684566.1:ENST00000682725.1:ENST00000337198.10:ENST00000684459.1:ENST00000683787.1:ENST00000682014.1:ENST00000682969.1:ENST00000684721.1:ENST00000683965.1:ENST00000347770.8:ENST00000521536.6:ENST00000520402.5:ENST00000518353.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	48	2	1.49356	1.72979	1.96602	0.0537505	0.0426807	0.180803	0.148082
chr16	81467700	81467799	6405226	0	+	0.474747	(0.44,0.476]	chr16	615026	218	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8	protein_coding	protein_coding	protein_coding	protein_coding	8	66	2	1.53117	1.7297699999999998	1.92837	0.0377545	0.0222222	0.140863	0.124303
chr20	50601373	50601472	7354525	0	-	0.454545	(0.44,0.476]	chr20	750001	33	INTRON	INTRON	RIPOR3	ENSG00000042062.13	ENST00000327979.8:ENST00000045083.6:ENST00000462493.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	82	2	1.56252	1.729705	1.89689	0.0465207	0.00630125	0.151387	0.0722266
chr19	13840833	13840933	7143328	0	-	0.34	(0.32,0.35]	chr19	721118	171	EXON_LNCRNA	EXON_LNCRNA	MIR23AHG	ENSG00000267519.6	ENST00000587762.2	lncRNA	lncRNA	lncRNA	lncRNA	12	116	2	1.68445	1.72957	1.77469	0.0198208	0.0115283	0.109608	0.0960498
chr10	21600736	21600836	4405084	0	+	0.4	(0.378,0.408]	chr10	406466	49	INTRON	INTRON	MLLT10	ENSG00000078403.17	ENST00000651097.1:ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000650772.1:ENST00000651298.1:ENST00000495130.5:ENST00000377059.7:ENST00000652258.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	50	2	1.51223	1.72952	1.94681	0.051139	0.0457723	0.176696	0.149888
chr20	64256504	64256585	7302179	0	+	0.395062	(0.378,0.408]	chr20	743353	2	INTRON	INTRON	PCMTD2	ENSG00000203880.12	ENST00000299468.11:ENST00000369758.8:ENST00000308824.11:ENST00000609372.1:ENST00000610196.1:ENST00000609764.1	protein_coding	protein_coding	protein_coding	protein_coding	6	50	2	1.51223	1.72952	1.94681	0.051139	0.0457723	0.176696	0.149888
chr9	136832635	136832734	4221998	0	+	0.565657	(0.515,0.57]	chr9	387706	3	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	RABL6	ENSG00000196642.19	ENST00000371671.9:ENST00000311502.12:ENST00000484471.6:ENST00000371663.10:ENST00000357466.6:ENST00000464941.5:ENST00000629216.2:ENST00000436380.5:ENST00000466096.5:ENST00000461992.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	12	84	2	1.32091	1.729495	2.13808	0.0433059	0.00333489	0.162255	0.0512081
chr1	162528833	162528932	238309	0	+	0.313131	(0.28,0.32]	chr1	28688	64	UTR3	UTR3:EXON_MRNA	UHMK1	ENSG00000152332.16	ENST00000545294.5:ENST00000538489.5:ENST00000489294.2	protein_coding	protein_coding	protein_coding	protein_coding	17	178	2	1.30131	1.729345	2.15738	0.0463958	0.00129435	0.151036	0.0333764
chr4	39710368	39710468	1953114	0	+	0.44	(0.408,0.44]	chr4	195630	116	INTRON	INTRON	UBE2K	ENSG00000078140.14	ENST00000510934.5:ENST00000261427.10:ENST00000438068.6:ENST00000513231.5:ENST00000503368.5:ENST00000445950.2:ENST00000510719.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	21	173	2	1.20594	1.729335	2.25273	0.0442298	2.96082e-4	0.149888	0.0154003
chr10	74003662	74003762	4454556	0	+	0.42	(0.408,0.44]	chr10	411385	49	INTRON	INTRON	VCL	ENSG00000035403.18	ENST00000623461.3:ENST00000372755.7:ENST00000624354.3:ENST00000211998.10:ENST00000478896.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	11	92	2	1.49971	1.72929	1.9588699999999999	0.0298505	0.00847845	0.142135	0.0778146
chr6	2970659	2970757	3047724	0	-	0.27551	[0,0.28]	chr6	283599	20	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	SERPINB6	ENSG00000124570.21	ENST00000643098.1:ENST00000380546.7:ENST00000380539.7:ENST00000380529.5:ENST00000649845.1:ENST00000644178.1:ENST00000612421.3:ENST00000616722.4:ENST00000642543.1:ENST00000644388.1:ENST00000380520.6:ENST00000645580.1:ENST00000644693.1:ENST00000646775.1:ENST00000645421.1:ENST00000643227.1:ENST00000646688.1:ENST00000644777.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	104	2	1.4296	1.7292550000000002	2.02891	0.043726	0.0236076	0.162255	0.118716
chr2	86468544	86468640	823218	0	+	0.416667	(0.408,0.44]	chr2	91957	8	INTRON	INTRON	KDM3A	ENSG00000115548.17	ENST00000409556.5:ENST00000312912.10:ENST00000441719.5:ENST00000409064.5:ENST00000485171.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	12	90	2	1.57853	1.72915	1.87977	0.0282738	0.0118585	0.125825	0.0962115
chr1	29172998	29173097	410355	0	-	0.30303	(0.28,0.32]	chr1	49420	45	EXON_MRNA	EXON_MRNA:INTRON	SRSF4	ENSG00000116350.18	ENST00000373795.7:ENST00000691479.1:ENST00000634348.1:ENST00000466448.4:ENST00000605204.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	104	2	1.53798	1.729145	1.92031	0.0287839	0.0182101	0.140044	0.107833
chr21	39274572	39274672	7465143	0	-	0.4	(0.378,0.408]	chr21	760523	1	SS3_PROX	SS3_PROX:INTRON	BRWD1	ENSG00000185658.14	ENST00000333229.6:ENST00000342449.8:ENST00000380800.7:ENST00000430093.5:ENST00000445245.5:ENST00000445668.5:ENST00000412604.1:ENST00000455867.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	13	103	2	1.53914	1.7290999999999999	1.91906	0.0153989	0.014213	0.103638	0.100621
chr1	180706597	180706697	270342	0	+	0.52	(0.515,0.57]	chr1	31620	238	INTRON	INTRON	XPR1	ENSG00000143324.14	ENST00000367590.9:ENST00000367589.3	protein_coding	protein_coding	protein_coding	protein_coding	11	77	2	1.67927	1.729075	1.77888	0.0157733	0.0139834	0.10247	0.101453
chr17	75384989	75385089	6837591	0	-	0.34	(0.32,0.35]	chr17	675716	518	INTRON	INTRON	GRB2	ENSG00000177885.15	ENST00000316615.9:ENST00000316804.10:ENST00000392562.5:ENST00000392564.5:ENST00000392563.5:ENST00000648046.1:ENST00000578961.5:ENST00000582582.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	95	2	1.27507	1.72903	2.18299	0.0696455	0.00505063	0.184298	0.0646039
chr7	155309642	155309741	3451885	0	+	0.434343	(0.408,0.44]	chr7	322637	14	UTR3	UTR3:EXON_MRNA	INSIG1	ENSG00000186480.13	ENST00000344756.8:ENST00000340368.9	protein_coding	protein_coding	protein_coding	protein_coding	36	290	2	1.24721	1.72902	2.21083	0.0166064	3.22705e-4	0.110511	0.0165891
chr10	21674219	21674319	4405826	0	+	0.31	(0.28,0.32]	chr10	406516	3	SS5_PROX	SS5_PROX:INTRON	MLLT10	ENSG00000078403.17	ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000651298.1:ENST00000377059.7:ENST00000651382.1:ENST00000438473.6:ENST00000420525.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	69	2	1.49395	1.7288549999999998	1.96376	0.0480066	0.0423482	0.161744	0.153019
chr1	223757816	223757913	320720	0	+	0.350515	(0.35,0.378]	chr1	36914	3	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	CAPN2	ENSG00000162909.18	ENST00000433674.6:ENST00000295006.6:ENST00000474026.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	21	184	2	1.42896	1.728825	2.02869	0.0195752	0.00151578	0.109483	0.0360297
chr3	152347417	152347517	1535775	0	+	0.29	(0.28,0.32]	chr3	160003	118	INTRON	INTRON	MBNL1	ENSG00000152601.18	ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000495875.6:ENST00000324210.10:ENST00000493459.5:ENST00000459747.1:ENST00000460591.5:ENST00000545754.5:ENST00000357472.7:ENST00000324196.9:ENST00000498502.5:ENST00000463374.5:ENST00000485910.5:ENST00000465907.6:ENST00000492948.5:ENST00000485509.5:ENST00000464596.5	protein_coding	protein_coding	protein_coding	protein_coding	11	104	2	1.25249	1.7288200000000002	2.20515	0.0515126	0.011946	0.176696	0.0899583
chr18	77974862	77974962	6990103	0	-	0.52	(0.515,0.57]	chr18	691890	16	INTRON	INTRON	LINC01029	ENSG00000265843.3	ENST00000657337.1:ENST00000669341.1:ENST00000671271.1:ENST00000668585.1:ENST00000666771.1:ENST00000667842.1:ENST00000661306.1:ENST00000662598.1:ENST00000662109.1:ENST00000662085.1:ENST00000583106.1:ENST00000582805.1	lncRNA	lncRNA	lncRNA	lncRNA	11	79	2	1.59629	1.72866	1.86103	0.0274344	0.00757303	0.136554	0.0749063
chr5	54070631	54070731	2618512	0	-	0.46	(0.44,0.476]	chr5	248837	225	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	65	2	1.4317	1.72864	2.02558	0.0363567	0.0304668	0.143385	0.138959
chr1	70224281	70224379	142620	0	+	0.387755	(0.378,0.408]	chr1	15978	11	INTRON	INTRON	SRSF11	ENSG00000116754.14	ENST00000370951.5:ENST00000463877.1:ENST00000687381.1:ENST00000370950.7:ENST00000475204.5:ENST00000370949.2:ENST00000395136.7:ENST00000473950.5:ENST00000469170.5:ENST00000486667.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	35	289	2	1.60206	1.7286299999999999	1.8552	0.00335334	0.00211875	0.0531398	0.0416736
chr17	70106073	70106173	6828509	0	-	0.34	(0.32,0.35]	chr17	675009	329	INTRON	INTRON	ENSG00000230258	ENSG00000230258.6	ENST00000435112.5	lncRNA	lncRNA	lncRNA	lncRNA	9	88	2	1.61334	1.7284950000000001	1.84365	0.0322135	0.0184323	0.132553	0.116493
chr2	70212420	70212519	1152078	0	-	0.343434	(0.32,0.35]	chr2	123027	31	UTR3	UTR3:EXON_MRNA:INTRON	C2orf42:TIA1	ENSG00000115998.8:ENSG00000116001.17	ENST00000470096.1:ENST00000415783.6:ENST00000433529.7:ENST00000282574.8:ENST00000445587.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	109	2	1.45623	1.7282950000000001	2.00036	0.0247853	0.012813	0.131909	0.0926667
chr19	972859	972959	6992969	0	+	0.61	(0.57,1]	chr19	692440	9	UTR3	UTR3:EXON_MRNA	ARID3A	ENSG00000116017.11	ENST00000263620.8	protein_coding	protein_coding	protein_coding	protein_coding	25	100	2	1.22202	1.72828	2.23454	0.0234215	1.78456e-4	0.118566	0.0116619
chr12	104292401	104292501	5210064	0	+	0.54	(0.515,0.57]	chr12	493210	9	INTRON	INTRON	TXNRD1	ENSG00000198431.17	ENST00000525566.6:ENST00000526266.5:ENST00000503506.6:ENST00000526691.5:ENST00000531691.5:ENST00000526390.5:ENST00000531689.5:ENST00000529546.5:ENST00000529751.1:ENST00000528079.6:ENST00000526580.5:ENST00000529784.5:ENST00000524698.5:ENST00000527688.5:ENST00000527335.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	50	2	1.63907	1.7282549999999999	1.81744	0.0350277	0.031028	0.143457	0.137535
chr1	171495205	171495305	253311	0	+	0.39	(0.378,0.408]	chr1	30096	91	INTRON	INTRON	PRRC2C	ENSG00000117523.18	ENST00000647382.2:ENST00000367742.7:ENST00000476522.5:ENST00000338920.8:ENST00000467601.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	57	2	1.63086	1.72803	1.8252	0.0619563	0.0252353	0.174514	0.133676
chr2	144402081	144402178	1240604	0	-	0.360825	(0.35,0.378]	chr2	131670	9	EXON_MRNA	EXON_MRNA:INTRON	ZEB2	ENSG00000169554.23	ENST00000636471.1:ENST00000627532.3:ENST00000638128.1:ENST00000637304.1:ENST00000636179.1:ENST00000636820.1:ENST00000637045.1:ENST00000636413.1:ENST00000638007.1:ENST00000638087.1:ENST00000419938.5:ENST00000409487.7:ENST00000440875.6:ENST00000636732.2:ENST00000636026.2:ENST00000675069.1:ENST00000689298.1:ENST00000539609.7:ENST00000558170.6:ENST00000303660.8:ENST00000675145.1:ENST00000427902.5:ENST00000637267.2:ENST00000392861.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	90	2	1.57247	1.72802	1.88357	0.0350068	0.0100866	0.137535	0.0884696
chr2	43971006	43971106	1110361	0	-	0.49	(0.476,0.515]	chr2	119091	69	INTRON	INTRON	LRPPRC	ENSG00000138095.20	ENST00000260665.12:ENST00000682308.1:ENST00000683459.1:ENST00000683623.1:ENST00000683125.1:ENST00000683994.1:ENST00000684619.1:ENST00000683833.1:ENST00000682546.1:ENST00000682585.1:ENST00000683220.1:ENST00000683796.1:ENST00000683590.1:ENST00000684306.1:ENST00000683213.1:ENST00000682779.1:ENST00000682885.1:ENST00000683346.1:ENST00000683072.1:ENST00000682303.1:ENST00000683329.1:ENST00000684383.1:ENST00000682480.1:ENST00000684290.1:ENST00000684341.1:ENST00000682595.1:ENST00000683802.1:ENST00000681961.1:ENST00000683694.1:ENST00000683989.1:ENST00000447246.2:ENST00000409659.6:ENST00000682104.1:ENST00000683934.1:ENST00000681959.1:ENST00000684482.1:ENST00000683082.1:ENST00000409946.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	66	2	1.67283	1.7279900000000001	1.78315	0.0332283	0.0215899	0.134145	0.123836
chr10	60790504	60790602	4435894	0	+	0.397959	(0.378,0.408]	chr10	409191	19	INTRON	INTRON	CDK1	ENSG00000170312.17	ENST00000519078.6:ENST00000316629.8:ENST00000395284.8:ENST00000448257.6:ENST00000373809.2:ENST00000487784.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	67	2	1.58985	1.7279149999999999	1.86598	0.0300232	0.0290335	0.141186	0.129138
chr7	75027371	75027470	3337011	0	+	0.626263	(0.57,1]	chr7	310610	28	UTR3	UTR3:EXON_MRNA	CASTOR2	ENSG00000274070.2	ENST00000616305.2	protein_coding	protein_coding	protein_coding	protein_coding	7	30	2	1.52818	1.72787	1.92756	0.0508101	0.0220439	0.175989	0.115395
chr6	4837707	4837807	2791476	0	+	0.54	(0.515,0.57]	chr6	263602	10	INTRON	INTRON	CDYL	ENSG00000153046.18	ENST00000328908.9:ENST00000491864.1:ENST00000440139.5:ENST00000483019.1:ENST00000397588.8:ENST00000472453.5:ENST00000449732.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	12	82	2	1.59358	1.72783	1.86208	0.0158706	0.0107937	0.109464	0.0869599
chr1	207340544	207340644	303463	0	+	0.44	(0.408,0.44]	chr1	34923	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	CD55	ENSG00000196352.18	ENST00000695822.1:ENST00000695823.1:ENST00000695826.1:ENST00000695825.1:ENST00000695824.1:ENST00000367063.6:ENST00000695827.1:ENST00000695828.1:ENST00000645323.1:ENST00000391921.9:ENST00000367064.9:ENST00000314754.12:ENST00000644836.1:ENST00000476590.1:ENST00000465534.5:ENST00000618707.2:ENST00000635614.2:ENST00000695831.1:ENST00000634386.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	14	110	2	1.16961	1.72749	2.28537	0.0598253	0.00158783	0.169278	0.0367961
chr4	39714860	39714959	1953159	0	+	0.484848	(0.476,0.515]	chr4	195630	161	INTRON	INTRON	UBE2K	ENSG00000078140.14	ENST00000510934.5:ENST00000261427.10:ENST00000438068.6:ENST00000513231.5:ENST00000503368.5:ENST00000445950.2:ENST00000510719.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	15	124	2	1.4273	1.7273749999999999	2.02745	0.0258675	0.00310396	0.133676	0.0498063
chr20	38424103	38424203	7342192	0	-	0.42	(0.408,0.44]	chr20	748302	6	EXON_LNCRNA	EXON_LNCRNA:INTRON	SNHG17	ENSG00000196756.14	ENST00000654008.2:ENST00000658076.1:ENST00000662982.2:ENST00000456953.7:ENST00000654183.2:ENST00000663540.2:ENST00000651115.2:ENST00000667835.1:ENST00000660885.2:ENST00000662213.1:ENST00000665233.2:ENST00000666268.2:ENST00000665735.1:ENST00000660558.2:ENST00000691280.1:ENST00000658488.2:ENST00000688336.1:ENST00000668054.2:ENST00000690441.1:ENST00000655520.2:ENST00000687490.1:ENST00000664626.1:ENST00000658051.1:ENST00000668042.1:ENST00000686971.1:ENST00000663187.1:ENST00000669114.1:ENST00000653343.1:ENST00000666225.1:ENST00000659186.1:ENST00000671309.1:ENST00000669405.1:ENST00000666806.1:ENST00000657665.1:ENST00000657868.1:ENST00000663534.1:ENST00000658141.1:ENST00000689917.1:ENST00000664073.2:ENST00000653697.1:ENST00000656320.1:ENST00000686814.1:ENST00000417578.7:ENST00000654853.1:ENST00000665440.1:ENST00000436764.7:ENST00000668482.2:ENST00000671249.1:ENST00000655692.1:ENST00000662568.1:ENST00000659255.1:ENST00000665693.1:ENST00000693250.1:ENST00000691368.1:ENST00000693227.1:ENST00000690361.1:ENST00000670051.1:ENST00000667912.1:ENST00000693665.1:ENST00000665181.1:ENST00000687532.1:ENST00000691386.1:ENST00000693684.1:ENST00000666331.1:ENST00000669480.1:ENST00000658905.1:ENST00000661252.1:ENST00000669137.1:ENST00000688133.1:ENST00000689414.1:ENST00000691314.1:ENST00000669033.1:ENST00000686145.1:ENST00000653938.1:ENST00000663784.1:ENST00000665003.1:ENST00000659400.1:ENST00000653753.1:ENST00000449469.5:ENST00000654389.1:ENST00000657429.1:ENST00000667412.1:ENST00000654092.1:ENST00000653277.1:ENST00000663955.1:ENST00000656023.1:ENST00000692262.1:ENST00000414142.5:ENST00000659753.1:ENST00000670958.1:ENST00000657216.2:ENST00000664636.1:ENST00000657843.1:ENST00000660189.1:ENST00000660064.1:ENST00000655198.1:ENST00000662572.1:ENST00000423536.6:ENST00000658455.1:ENST00000666419.1:ENST00000413755.5	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	18	134	2	1.14303	1.727275	2.31152	0.0472331	0.00139382	0.152695	0.0341355
chr6	31830159	31830254	2843826	0	+	0.221053	[0,0.28]	chr6	267901	4	UTR3	UTR3:EXON_MRNA	HSPA1B	ENSG00000204388.7	ENST00000375650.5	protein_coding	protein_coding	protein_coding	protein_coding	70	838	2	1.72409	1.727175	1.73026	0.00424069	0.00192372	0.0573136	0.0406252
chr22	49655023	49655123	7602638	0	-	0.39	(0.378,0.408]	chr22	778594	276	INTRON	INTRON	MIR3667HG	ENSG00000188511.13	ENST00000414287.5:ENST00000416411.1:ENST00000689875.1:ENST00000400023.5:ENST00000405854.5	lncRNA	lncRNA	lncRNA	lncRNA	15	116	2	1.16621	1.7270699999999999	2.28793	0.0515982	0.00291235	0.159041	0.0494641
chr19	10287012	10287112	7012547	0	+	0.65	(0.57,1]	chr19	696551	1	CDS_START	CDS_START:CDS:EXON_MRNA	ICAM4	ENSG00000105371.10	ENST00000380770.5:ENST00000340992.4:ENST00000393717.2	protein_coding	protein_coding	protein_coding	protein_coding	11	46	2	1.4039	1.726995	2.05009	0.0408599	0.00432938	0.1451	0.0600206
chr11	68488974	68489073	4817615	0	+	0.373737	(0.35,0.378]	chr11	448907	278	INTRON	INTRON	PPP6R3	ENSG00000110075.15	ENST00000530427.5:ENST00000528635.5:ENST00000529907.5:ENST00000533127.5:ENST00000534534.5:ENST00000529344.5:ENST00000524845.5:ENST00000393800.7:ENST00000265637.8:ENST00000524904.5:ENST00000393801.7:ENST00000265636.9:ENST00000529710.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	14	125	2	1.4117	1.7268949999999998	2.04209	0.0380767	0.00246593	0.141678	0.0459275
chr7	140469989	140470089	3661532	0	-	0.45	(0.44,0.476]	chr7	339916	94	INTRON	INTRON	MKRN1	ENSG00000133606.11	ENST00000255977.7:ENST00000475010.5:ENST00000495305.5:ENST00000474576.5:ENST00000480552.5:ENST00000496169.5:ENST00000443720.6:ENST00000471104.5:ENST00000467513.5:ENST00000494939.1:ENST00000498535.1:ENST00000473444.1:ENST00000475180.5:ENST00000481705.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	18	149	2	1.3337	1.726845	2.11999	0.0396627	6.47281e-4	0.143072	0.0230714
chr22	38505249	38505349	7588084	0	-	0.39	(0.378,0.408]	chr22	776774	1	SS3_ADJ	SS3_ADJ:SS3_PROX:SS5_PROX:INTRON	DDX17	ENSG00000100201.23	ENST00000403230.3:ENST00000396821.8:ENST00000216019.11:ENST00000432525.5:ENST00000467279.1:ENST00000479734.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	69	2	1.56313	1.7268249999999998	1.89052	0.0474151	0.0148147	0.153019	0.106702
chr1	2266539	2266639	2549	0	+	0.59	(0.57,1]	chr1	557	181	INTRON	INTRON	SKI	ENSG00000157933.10	ENST00000378536.5:ENST00000508416.1:ENST00000478223.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	22	2	1.67986	1.7267549999999998	1.77365	0.0670385	0.0496395	0.183051	0.174685
chr19	15325336	15325436	7147334	0	-	0.58	(0.57,1]	chr19	721965	450	INTRON	INTRON	BRD4	ENSG00000141867.19	ENST00000679869.1:ENST00000360016.9:ENST00000594841.5:ENST00000597315.5:ENST00000601941.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	22	2	1.67986	1.7267549999999998	1.77365	0.0670385	0.0496395	0.183051	0.174685
chr16	29520477	29520577	6470770	0	-	0.46	(0.44,0.476]	chr16	625147	146	INTRON	INTRON	ENSG00000288632	ENSG00000288632.1	ENST00000675579.1	lncRNA	lncRNA	lncRNA	lncRNA	16	115	2	1.06715	1.7267450000000002	2.38634	0.0639951	0.0018045	0.177882	0.039301
chr16	88717536	88717611	6539480	0	-	0.36	(0.35,0.378]	chr16	633834	1	CDS_START	CDS_START:CDS_STOP:CDS:UTR3:EXON_MRNA:SS3_PROX:INTRON	PIEZO1	ENSG00000103335.22	ENST00000301015.14:ENST00000419505.5:ENST00000484567.6:ENST00000327397.8:ENST00000495568.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	75	2	1.54563	1.7267350000000001	1.90784	0.046845	0.0165983	0.167716	0.102621
chr19	29951512	29951612	7047646	0	+	0.48	(0.476,0.515]	chr19	702657	85	INTRON	INTRON	URI1	ENSG00000105176.18	ENST00000360605.8:ENST00000570564.5:ENST00000574233.5:ENST00000392271.6:ENST00000574110.5:ENST00000574666.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	17	136	2	1.49956	1.72668	1.9538	0.0188264	0.00264114	0.108861	0.0473326
chr21	39304564	39304664	7465452	0	-	0.39	(0.378,0.408]	chr21	760568	56	INTRON	INTRON	BRWD1	ENSG00000185658.14	ENST00000333229.6:ENST00000342449.8:ENST00000380800.7:ENST00000341322.4:ENST00000470108.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	19	164	2	1.10698	1.726645	2.34631	0.0672644	2.34382e-4	0.183065	0.013547
chr7	75371326	75371425	3337782	0	+	0.343434	(0.32,0.35]	chr7	310752	38	INTRON	INTRON	STAG3L1	ENSG00000205583.14	ENST00000619870.4:ENST00000404291.3	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	12	114	2	1.20134	1.726625	2.25191	0.0737029	0.00217694	0.190643	0.0435144
chrX	154786400	154786500	7915412	0	-	0.46	(0.44,0.476]	chrX	806145	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	MPP1	ENSG00000130830.15	ENST00000369534.8:ENST00000413259.7:ENST00000439370.5:ENST00000393531.5:ENST00000453245.5:ENST00000494170.1:ENST00000462825.5:ENST00000393529.5:ENST00000475943.5:ENST00000428488.1:ENST00000488754.5:ENST00000417435.5:ENST00000488694.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	12	100	2	1.57262	1.72657	1.88052	0.0230575	0.00808369	0.126603	0.0766625
chr17	42271482	42271578	6772176	0	-	0.291667	(0.28,0.32]	chr17	666965	11	EXON_LNCRNA	EXON_LNCRNA:INTRON	STAT5B:ENSG00000236194	ENSG00000173757.10:ENSG00000236194.3	ENST00000293328.8:ENST00000468312.1:ENST00000415845.1:ENST00000597755.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	13	136	2	1.55075	1.72653	1.90231	0.0330294	0.00555076	0.133816	0.0675005
chr16	89474459	89474558	6543441	0	-	0.323232	(0.32,0.35]	chr16	634281	428	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	12	117	2	1.27507	1.72652	2.17797	0.0696455	0.00198095	0.184298	0.0411469
chr18	51034507	51034606	6901664	0	+	0.545455	(0.515,0.57]	chr18	683840	35	INTRON	INTRON	SMAD4	ENSG00000141646.15	ENST00000588860.5:ENST00000398417.6:ENST00000589076.5:ENST00000342988.8:ENST00000590061.1:ENST00000592911.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	14	88	2	1.09994	1.7263449999999998	2.35275	0.0604135	0.00219906	0.19161	0.0417893
chr16	89455888	89455988	6543255	0	-	0.47	(0.44,0.476]	chr16	634281	242	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	81	2	1.64563	1.726325	1.80702	0.0363922	0.00924948	0.138959	0.0855292
chr9	130856093	130856192	4215287	0	+	0.50505	(0.476,0.515]	chr9	386442	6	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000318560.6	protein_coding	protein_coding	protein_coding	protein_coding	8	64	2	1.43644	1.7263099999999998	2.01618	0.047372	0.0180082	0.169265	0.106756
chr16	29920116	29920212	6471963	0	-	0.458333	(0.44,0.476]	chr16	625365	6	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	KCTD13	ENSG00000174943.11	ENST00000308768.9:ENST00000568000.6:ENST00000566842.5:ENST00000568995.1:ENST00000563264.1:ENST00000566413.1:ENST00000561540.2:ENST00000648037.1:ENST00000567795.3:ENST00000649581.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	48	2	1.54868	1.72629	1.9039	0.0501498	0.0457575	0.164677	0.156383
chr17	47660793	47660881	6622688	0	+	0.295455	(0.28,0.32]	chr17	646020	3	SS3_PROX	SS3_PROX:INTRON	KPNB1	ENSG00000108424.11	ENST00000535458.6:ENST00000583648.6:ENST00000290158.9:ENST00000577918.5:ENST00000540627.5:ENST00000582097.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	129	2	1.24672	1.72626	2.2058	0.0546727	0.00496409	0.165463	0.0646039
chr2	172581092	172581191	920157	0	+	0.515152	(0.476,0.515]	chr2	101374	99	INTRON	INTRON	PDK1	ENSG00000152256.14	ENST00000392571.6:ENST00000410055.5:ENST00000282077.8:ENST00000466437.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	13	103	2	1.72573	1.726255	1.72678	0.0196488	0.00766467	0.109608	0.0780196
chr19	47173001	47173100	7084305	0	+	0.484848	(0.476,0.515]	chr19	708798	27	INTRON	INTRON	SAE1	ENSG00000142230.13	ENST00000413379.7:ENST00000270225.12:ENST00000598840.5:ENST00000414294.6:ENST00000660039.1:ENST00000664120.1:ENST00000596995.1:ENST00000392776.3:ENST00000659110.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	70	2	1.27903	1.7262499999999998	2.17347	0.0608608	0.010447	0.19287	0.0855102
chr1	202945075	202945169	621307	0	-	0.446809	(0.44,0.476]	chr1	73792	2	CDS	CDS:EXON_MRNA:INTRON	ADIPOR1	ENSG00000159346.13	ENST00000340990.10:ENST00000367254.7:ENST00000417068.5:ENST00000426229.1	protein_coding	protein_coding	protein_coding	protein_coding	12	94	2	1.69049	1.72622	1.76195	0.0252608	0.00892921	0.12011	0.0849778
chr7	75467006	75467106	3558737	0	-	0.39	(0.378,0.408]	chr7	331545	244	INTRON	INTRON	POM121C	ENSG00000272391.6	ENST00000615331.5:ENST00000398379.2	protein_coding	protein_coding	protein_coding	protein_coding	13	102	2	1.3277	1.7261	2.1245	0.0321963	0.00724232	0.145026	0.0729826
chr13	19726647	19726747	5552377	0	-	0.45	(0.44,0.476]	chr13	530696	167	INTRON	INTRON	PSPC1	ENSG00000121390.19	ENST00000471658.5:ENST00000492741.5:ENST00000635562.1:ENST00000338910.9:ENST00000619300.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	81	2	1.41932	1.72609	2.03286	0.0391653	0.00977911	0.161534	0.0835427
chr8	129573714	129573784	4061027	0	-	0.385714	(0.378,0.408]	chr8	369687	1	INTRON	INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1:ENST00000676273.1:ENST00000667643.1:ENST00000668791.1:ENST00000663716.1:ENST00000663572.1:ENST00000667962.1:ENST00000674877.1:ENST00000675316.1:ENST00000674656.1:ENST00000446592.7:ENST00000667341.1:ENST00000675186.1:ENST00000652971.1:ENST00000661447.1:ENST00000674863.1:ENST00000675498.1:ENST00000675527.1:ENST00000676108.1:ENST00000657647.1:ENST00000675589.1:ENST00000675913.1:ENST00000675109.1:ENST00000671632.1:ENST00000671311.1:ENST00000676099.1:ENST00000660652.1:ENST00000675044.1:ENST00000675435.1:ENST00000676069.1:ENST00000675532.1:ENST00000674762.1:ENST00000523151.6:ENST00000675948.1:ENST00000665364.1:ENST00000657251.1:ENST00000675166.1:ENST00000674883.1:ENST00000675867.1:ENST00000674580.1:ENST00000675393.1:ENST00000520048.1:ENST00000674906.1:ENST00000676030.1:ENST00000670588.1:ENST00000675072.1:ENST00000664936.1:ENST00000652914.1:ENST00000657069.1:ENST00000674882.1	lncRNA	lncRNA	lncRNA	lncRNA	6	53	2	1.72045	1.726045	1.73164	0.0441773	0.0424671	0.161763	0.149888
chr9	135934697	135934795	4372289	0	-	0.397959	(0.378,0.408]	chr9	402502	8	INTRON	INTRON	UBAC1	ENSG00000130560.9	ENST00000371756.4:ENST00000489050.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	53	2	1.72045	1.726045	1.73164	0.0441773	0.0424671	0.161763	0.149888
chr14	31018031	31018130	5857790	0	-	0.323232	(0.32,0.35]	chr14	556512	29	INTRON	INTRON	STRN3	ENSG00000196792.12	ENST00000355683.9:ENST00000357479.10:ENST00000555358.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	84	2	1.71888	1.72603	1.73318	0.0462868	0.014315	0.150684	0.104106
chr1	6522815	6522913	367794	0	-	0.459184	(0.44,0.476]	chr1	43178	16	UTR3	UTR3:EXON_MRNA	NOL9	ENSG00000162408.11	ENST00000377705.6	protein_coding	protein_coding	protein_coding	protein_coding	26	216	2	1.57894	1.725965	1.87299	0.0075692	0.00191547	0.0773151	0.0395564
chr16	23900649	23900749	6324407	0	+	0.27	[0,0.28]	chr16	605701	69	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000498739.1	protein_coding	protein_coding	protein_coding	protein_coding	15	181	2	1.68841	1.725955	1.7635	0.0158374	0.0123622	0.101453	0.0973643
chr3	47898484	47898583	1685579	0	-	0.323232	(0.32,0.35]	chr3	172201	58	INTRON	INTRON	MAP4	ENSG00000047849.22	ENST00000429422.5:ENST00000683076.1:ENST00000395734.7:ENST00000426837.6:ENST00000360240.10:ENST00000383736.3:ENST00000482752.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	95	2	1.67688	1.7257850000000001	1.77469	0.0361676	0.0115283	0.138959	0.0960498
chr14	21236860	21236960	5834840	0	-	0.39	(0.378,0.408]	chr14	554458	4	SS3_PROX	SS3_PROX:INTRON	HNRNPC	ENSG00000092199.19	ENST00000336053.10:ENST00000553300.6:ENST00000554969.5:ENST00000556142.5:ENST00000554455.5:ENST00000430246.6:ENST00000553753.5:ENST00000555309.5:ENST00000555914.5:ENST00000557442.5:ENST00000556628.5:ENST00000556513.5:ENST00000555883.5:ENST00000557201.5:ENST00000556897.5:ENST00000420743.6:ENST00000554539.5:ENST00000554383.5:ENST00000555215.5:ENST00000555137.5:ENST00000554891.5:ENST00000556226.5:ENST00000555176.5:ENST00000553614.5:ENST00000557336.1:ENST00000557768.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	69	2	1.60295	1.72563	1.84831	0.0422859	0.0172621	0.148082	0.111749
chrX	24074681	24074777	7630942	0	+	0.3125	(0.28,0.32]	chrX	781493	9	INTRON	INTRON	EIF2S3	ENSG00000130741.11	ENST00000253039.9:ENST00000457332.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	33	340	2	1.50522	1.72556	1.9459	0.0128341	0.00106623	0.0926667	0.0300133
chr19	34300174	34300274	7051845	0	+	0.35	(0.32,0.35]	chr19	703263	6	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GARRE1	ENSG00000166398.14	ENST00000588470.5:ENST00000299505.8:ENST00000589583.5:ENST00000588338.6:ENST00000592124.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	49	2	1.67393	1.725485	1.77704	0.0719969	0.0496128	0.187322	0.174685
chrX	136863314	136863413	7897505	0	-	0.323232	(0.32,0.35]	chrX	804139	144	INTRON	INTRON	RBMX	ENSG00000147274.14	ENST00000561733.5	protein_coding	processed_transcript	protein_coding	processed_transcript	5	49	2	1.67393	1.725485	1.77704	0.0719969	0.0496128	0.187322	0.174685
chr2	38750323	38750415	1099874	0	-	0.369565	(0.35,0.378]	chr2	118013	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SRSF7	ENSG00000115875.19	ENST00000446327.6:ENST00000313117.11:ENST00000425778.5:ENST00000425941.6:ENST00000409276.5:ENST00000431066.5:ENST00000443213.5:ENST00000415527.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	82	2	1.57496	1.72541	1.87586	0.0271411	0.0268864	0.135275	0.123904
chr11	85978359	85978448	5013908	0	-	0.382022	(0.378,0.408]	chr11	472922	4	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000530692.5:ENST00000630913.2:ENST00000529760.5:ENST00000528398.5:ENST00000532603.5:ENST00000356360.9:ENST00000529016.5:ENST00000526961.5:ENST00000526907.1:ENST00000530542.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	28	234	2	1.46247	1.725185	1.9879	0.0149214	6.1265e-4	0.0992554	0.0223951
chr17	30119072	30119172	6587411	0	+	0.38	(0.378,0.408]	chr17	640557	5	INTRON	INTRON	NSRP1	ENSG00000126653.18	ENST00000540900.7:ENST00000584423.5:ENST00000612959.4:ENST00000247026.10:ENST00000577289.6:ENST00000584154.5:ENST00000394826.8:ENST00000479218.6:ENST00000475652.5:ENST00000584317.5:ENST00000583301.5:ENST00000585881.5:ENST00000467446.6:ENST00000580103.6:ENST00000581048.5:ENST00000588614.1:ENST00000589608.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	95	2	1.37524	1.725155	2.07507	0.0610755	0.00284959	0.172411	0.0494641
chr7	148875441	148875540	3670675	0	-	0.343434	(0.32,0.35]	chr7	340632	42	INTRON	INTRON	EZH2	ENSG00000106462.12	ENST00000683292.1:ENST00000320356.7:ENST00000492143.5:ENST00000478654.5:ENST00000350995.6:ENST00000460911.5:ENST00000683744.1:ENST00000682317.1:ENST00000682263.1:ENST00000476773.5:ENST00000483967.5:ENST00000498186.5:ENST00000483012.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	124	2	1.59247	1.7251050000000001	1.85774	0.0269797	0.0061655	0.123585	0.0712486
chr16	31181312	31181409	6340564	0	+	0.474227	(0.44,0.476]	chr16	608317	7	INTRON	INTRON	FUS	ENSG00000089280.19	ENST00000566605.5:ENST00000254108.12:ENST00000380244.7:ENST00000487045.6:ENST00000487509.6:ENST00000568685.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	20	159	2	1.5243	1.72497	1.92564	0.0099052	0.00555103	0.0838372	0.0675005
chr22	41841351	41841451	7526080	0	+	0.43	(0.408,0.44]	chr22	769353	76	INTRON	INTRON	SREBF2	ENSG00000198911.12	ENST00000612482.4:ENST00000361204.9:ENST00000424354.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	16	126	2	1.59411	1.7248899999999998	1.85567	0.00937669	0.0090746	0.0859966	0.080809
chr1	213146375	213146475	311658	0	+	0.41	(0.408,0.44]	chr1	35945	161	INTRON	INTRON	RPS6KC1	ENSG00000136643.12	ENST00000615329.4:ENST00000543354.5:ENST00000614059.4:ENST00000543470.5:ENST00000366960.8:ENST00000366959.4:ENST00000490299.5:ENST00000468069.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	81	2	1.29079	1.7248649999999999	2.15894	0.0625053	0.00504142	0.175709	0.0646039
chr5	91370212	91370311	2674850	0	-	0.252525	[0,0.28]	chr5	253079	17	UTR3	UTR3:EXON_MRNA	ARRDC3	ENSG00000113369.9	ENST00000265138.4	protein_coding	protein_coding	protein_coding	protein_coding	10	119	2	1.6609	1.724745	1.78859	0.0307903	0.0206759	0.13151	0.122348
chr18	9921109	9921209	6873412	0	+	0.32	(0.28,0.32]	chr18	680866	49	INTRON	INTRON	VAPA	ENSG00000101558.14	ENST00000400000.7:ENST00000577901.5:ENST00000340541.4:ENST00000585042.5:ENST00000578314.1:ENST00000584796.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	14	133	2	1.38405	1.72464	2.06523	0.0258452	0.0112084	0.133676	0.0880475
chr5	180575982	180576081	2562693	0	+	0.292929	(0.28,0.32]	chr5	245145	19	UTR3	UTR3:EXON_MRNA	CNOT6	ENSG00000113300.13	ENST00000261951.9:ENST00000393356.7:ENST00000618123.4	protein_coding	protein_coding	protein_coding	protein_coding	13	126	2	1.36121	1.7246199999999998	2.08803	0.0316377	0.0103533	0.144449	0.085045
chr22	20518777	20518877	7479459	0	+	0.33	(0.32,0.35]	chr22	762953	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	MED15	ENSG00000099917.17	ENST00000445987.5:ENST00000444094.5:ENST00000414658.5:ENST00000486656.5:ENST00000433831.5:ENST00000432052.5:ENST00000292733.11:ENST00000263205.11:ENST00000477824.5:ENST00000406969.5:ENST00000382974.6:ENST00000441501.5:ENST00000438962.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	95	2	1.61669	1.724605	1.83252	0.0578816	0.0116897	0.188651	0.0892574
chr1	147268381	147268481	212489	0	+	0.39	(0.378,0.408]	chr1	23538	2	SS3_PROX	SS3_PROX:INTRON	CHD1L	ENSG00000131778.20	ENST00000652587.1:ENST00000652616.1:ENST00000652494.1:ENST00000651207.1:ENST00000650721.1:ENST00000651226.1:ENST00000652161.1:ENST00000651510.1:ENST00000361293.10:ENST00000652278.1:ENST00000369259.4:ENST00000467213.5:ENST00000369258.8:ENST00000622533.4:ENST00000651410.1:ENST00000652486.1:ENST00000652346.1:ENST00000651407.1:ENST00000650828.1:ENST00000651070.1:ENST00000650714.1:ENST00000651420.1:ENST00000652357.1:ENST00000488864.5:ENST00000652188.1:ENST00000651820.1:ENST00000651231.1:ENST00000651206.1:ENST00000431239.6:ENST00000650813.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	58	2	1.33751	1.72427	2.11103	0.0677318	0.0266911	0.18426	0.134419
chr4	55602174	55602274	2150352	0	-	0.28	[0,0.28]	chr4	211609	12	INTRON	INTRON	NMU	ENSG00000109255.11	ENST00000511469.5:ENST00000264218.7:ENST00000505262.5:ENST00000507338.1:ENST00000515325.5:ENST00000509371.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	112	2	1.44663	1.7242350000000002	2.00184	0.0345947	0.0255167	0.148144	0.120269
chr1	205743189	205743288	623820	0	-	0.333333	(0.32,0.35]	chr1	74198	120	INTRON	INTRON	NUCKS1	ENSG00000069275.13	ENST00000367142.5	protein_coding	protein_coding	protein_coding	protein_coding	9	74	2	1.22414	1.724215	2.22429	0.0625148	0.0226421	0.195535	0.117557
chr3	196068430	196068530	1897409	0	-	0.48	(0.476,0.515]	chr3	189950	3	SS3_PROX	SS3_PROX:INTRON	TFRC	ENSG00000072274.13	ENST00000420415.5:ENST00000360110.9:ENST00000392396.7:ENST00000491658.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	22	140	2	1.13404	1.7241399999999998	2.31424	0.0322744	0.00308038	0.145026	0.0496438
chr4	70924234	70924334	1970724	0	+	0.39	(0.378,0.408]	chr4	197571	213	INTRON	INTRON	MOB1B	ENSG00000173542.9	ENST00000502869.5:ENST00000509041.5:ENST00000309395.7:ENST00000396051.2:ENST00000511449.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	67	2	1.45934	1.72411	1.98888	0.0442931	0.0205239	0.162302	0.110999
chrX	74277234	74277333	7841453	0	-	0.363636	(0.35,0.378]	chrX	799733	24	INTRON	INTRON	FTX	ENSG00000230590.12	ENST00000603672.5:ENST00000430772.6:ENST00000602776.6:ENST00000638681.1:ENST00000652319.1:ENST00000661133.1:ENST00000652071.1:ENST00000602812.6:ENST00000651703.1:ENST00000653018.1:ENST00000658448.1:ENST00000662240.1:ENST00000652527.1:ENST00000651451.1:ENST00000657611.1:ENST00000660481.1:ENST00000659574.1:ENST00000661084.1:ENST00000662494.1:ENST00000670936.1:ENST00000602420.6:ENST00000658203.1:ENST00000638985.1:ENST00000691187.1:ENST00000603037.2:ENST00000687056.1:ENST00000654870.2:ENST00000652540.1:ENST00000652331.2:ENST00000652013.1:ENST00000657070.1:ENST00000665069.1:ENST00000651936.1:ENST00000652496.1:ENST00000653874.2:ENST00000661335.1:ENST00000664123.1:ENST00000658439.1:ENST00000666535.1:ENST00000652970.1:ENST00000423992.3:ENST00000665313.2:ENST00000651140.1:ENST00000693483.1:ENST00000656041.1:ENST00000657327.1:ENST00000664343.1:ENST00000656977.1:ENST00000671343.1:ENST00000659407.1:ENST00000671067.1:ENST00000660829.1:ENST00000671385.1:ENST00000418855.6:ENST00000602576.5	lncRNA	lncRNA	lncRNA	lncRNA	12	102	2	1.20009	1.72409	2.24809	0.063396	0.00361961	0.177047	0.0554656
chr7	6805718	6805813	3478692	0	-	0.536842	(0.515,0.57]	chr7	325553	8	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	CCZ1B	ENSG00000146574.16	ENST00000316731.13:ENST00000626257.2:ENST00000467004.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	36	2	1.49871	1.7240799999999998	1.94945	0.0770828	0.0414068	0.196285	0.161557
chr19	11608648	11608747	7018130	0	+	0.323232	(0.32,0.35]	chr19	697694	39	INTRON	INTRON	ZNF627	ENSG00000198551.10	ENST00000585493.5:ENST00000587939.5:ENST00000361113.10:ENST00000588174.1	protein_coding	protein_coding	protein_coding	protein_coding	7	69	2	1.45026	1.724055	1.99785	0.0622478	0.0215554	0.194723	0.114686
chr7	158903690	158903789	3456610	0	+	0.555556	(0.515,0.57]	chr7	323187	12	EXON_MRNA	EXON_MRNA:INTRON	DYNC2I1	ENSG00000126870.16	ENST00000407559.8:ENST00000444851.5:ENST00000467220.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	42	2	1.7074	1.72405	1.7407	0.0779432	0.0242347	0.196685	0.130613
chr22	49637338	49637438	7602461	0	-	0.71	(0.57,1]	chr22	778594	99	INTRON	INTRON	MIR3667HG	ENSG00000188511.13	ENST00000414287.5:ENST00000416411.1:ENST00000689875.1:ENST00000400023.5:ENST00000405854.5	lncRNA	lncRNA	lncRNA	lncRNA	5	22	2	1.52865	1.72401	1.91937	0.0730445	0.0468438	0.189414	0.167716
chr16	58625785	58625883	6496345	0	-	0.418367	(0.408,0.44]	chr16	628651	6	INTRON	INTRON	CNOT1	ENSG00000125107.19	ENST00000317147.10:ENST00000569240.5:ENST00000567188.5:ENST00000441024.6:ENST00000565605.5:ENST00000564557.1:ENST00000569916.1:ENST00000569020.5:ENST00000568158.1:ENST00000569263.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	81	2	1.32496	1.723995	2.12303	0.0566224	0.00586883	0.167389	0.0690758
chr16	1746140	1746238	6275866	0	+	0.591837	(0.57,1]	chr16	599574	28	EXON_MRNA	EXON_MRNA:INTRON	MAPK8IP3	ENSG00000138834.15	ENST00000685674.1:ENST00000250894.8:ENST00000673691.1:ENST00000356010.9:ENST00000610761.2:ENST00000564098.5:ENST00000561765.1:ENST00000568271.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	9	38	2	1.50772	1.72398	1.94024	0.0388955	0.0116325	0.16071	0.0889284
chr3	48694525	48694621	1689468	0	-	0.270833	[0,0.28]	chr3	172839	1	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	IP6K2	ENSG00000068745.15	ENST00000328631.10:ENST00000479914.5:ENST00000449563.5:ENST00000413654.5:ENST00000443853.5:ENST00000437427.5:ENST00000412850.5:ENST00000454335.5:ENST00000340879.8:ENST00000432678.6:ENST00000433104.2:ENST00000416707.1:ENST00000431721.6:ENST00000449610.5:ENST00000413298.5:ENST00000450045.5:ENST00000446860.5:ENST00000455545.5:ENST00000412795.5:ENST00000417896.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	94	2	1.34837	1.72368	2.09899	0.0470905	0.0371453	0.168569	0.139304
chrX	73822333	73822432	7837741	0	-	0.414141	(0.408,0.44]	chrX	799584	18	EXON_LNCRNA	EXON_LNCRNA:SS3_PROX:INTRON	XIST	ENSG00000229807.13	ENST00000669898.1:ENST00000650627.1:ENST00000434839.3:ENST00000421322.3:ENST00000416330.2:ENST00000429829.6:ENST00000648829.1:ENST00000666954.1:ENST00000417942.5:ENST00000647913.2:ENST00000647696.1:ENST00000650366.1:ENST00000648607.1:ENST00000650548.1:ENST00000650186.1:ENST00000635841.2:ENST00000650637.1:ENST00000648970.1	lncRNA	lncRNA	lncRNA	lncRNA	30	197	2	1.1866	1.7235749999999999	2.26055	0.0201438	0.00154265	0.121243	0.0357086
chr1	22054416	22054516	42217	0	+	0.48	(0.476,0.515]	chr1	5067	1	SS5_PROX	SS5_PROX:INTRON	ENSG00000289694:CDC42	ENSG00000289694.1:ENSG00000070831.18	ENST00000695855.1:ENST00000695856.1:ENST00000344548.8:ENST00000400259.5:ENST00000667384.2:ENST00000411827.2:ENST00000695858.1:ENST00000695857.1:ENST00000315554.14:ENST00000695859.1:ENST00000498236.1:ENST00000656825.1:ENST00000651171.1:ENST00000652582.1:ENST00000695860.1:ENST00000695796.1:ENST00000695797.1:ENST00000662562.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	74	2	1.48272	1.723545	1.96437	0.0410274	0.0124351	0.161534	0.0920366
chr7	72951460	72951555	3553770	0	-	0.505263	(0.476,0.515]	chr7	330613	9	INTRON	INTRON	NSUN5P2	ENSG00000106133.18	ENST00000602348.5:ENST00000444583.6:ENST00000388955.8:ENST00000485741.6:ENST00000457352.4	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	11	86	2	1.41803	1.72346	2.02889	0.0320614	0.00978617	0.145026	0.0835427
chr17	22092706	22092806	6578590	0	+	0.56	(0.515,0.57]	chr17	639556	14	INTRON	INTRON	UBBP4	ENSG00000263563.7	ENST00000648259.1:ENST00000688301.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	15	101	2	1.67348	1.723245	1.77301	0.0109049	0.00720605	0.0873034	0.0756278
chr15	64138296	64138395	6043307	0	+	0.383838	(0.378,0.408]	chr15	575580	2	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	SNX1	ENSG00000028528.15	ENST00000559844.6:ENST00000380285.7:ENST00000261889.9:ENST00000558040.5:ENST00000560861.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	93	2	1.67662	1.723225	1.76983	0.0243251	0.0109303	0.12011	0.0924702
chr6	32979194	32979284	2846535	0	+	0.477778	(0.476,0.515]	chr6	268488	1	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	BRD2	ENSG00000204256.14	ENST00000374825.9:ENST00000469132.2:ENST00000679179.1:ENST00000678778.1:ENST00000449085.4:ENST00000677331.1:ENST00000678250.1:ENST00000677085.1:ENST00000374831.8:ENST00000482914.5:ENST00000679099.1:ENST00000464592.6:ENST00000395287.5:ENST00000449025.5:ENST00000463639.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	17	136	2	1.68099	1.72322	1.76545	0.0076972	0.00763432	0.0777284	0.0754719
chr5	70228094	70228194	2638067	0	-	0.44	(0.408,0.44]	chr5	250619	19	INTRON	INTRON	GUSBP14	ENSG00000253816.3	ENST00000514522.2	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	5	42	2	1.6306	1.72316	1.81572	0.0626779	0.0544158	0.182272	0.175915
chr19	10807032	10807126	7014685	0	+	0.404255	(0.378,0.408]	chr19	697017	7	INTRON	INTRON	DNM2	ENSG00000079805.19	ENST00000355667.11:ENST00000389253.9:ENST00000585892.5:ENST00000359692.10:ENST00000408974.8:ENST00000587830.2:ENST00000681972.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	25	204	2	1.58626	1.723155	1.86005	0.00538912	0.00386204	0.066545000000000007	0.0542786
chr1	61089479	61089579	127462	0	+	0.35	(0.32,0.35]	chr1	14770	9	EXON_MRNA	EXON_MRNA:INTRON	NFIA	ENSG00000162599.17	ENST00000371191.5:ENST00000664495.1:ENST00000476646.5:ENST00000407417.7:ENST00000479364.1:ENST00000371189.8:ENST00000670151.1:ENST00000664149.1:ENST00000662015.1:ENST00000403491.8:ENST00000371187.7:ENST00000485903.6:ENST00000371185.6:ENST00000371184.6:ENST00000603233.2:ENST00000496712.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	68	2	1.59364	1.72312	1.8526	0.0413426	0.0332438	0.161557	0.134145
chr20	47228069	47228166	7348209	0	-	0.257732	[0,0.28]	chr20	749253	4	INTRON	INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000467200.6:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4	protein_coding	protein_coding	protein_coding	protein_coding	11	133	2	1.50993	1.723065	1.9362	0.0417535	0.0103279	0.147075	0.0894692
chr20	50587137	50587231	7354371	0	-	0.5	(0.476,0.515]	chr20	749955	12	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	RIPOR3	ENSG00000042062.13	ENST00000327979.8:ENST00000045083.6:ENST00000462842.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	64	2	1.65426	1.723065	1.79187	0.0362169	0.0231344	0.138959	0.126939
chr19	28528606	28528706	7166381	0	-	0.43	(0.408,0.44]	chr19	724189	604	INTRON	INTRON	ENSG00000283403:ENSG00000267243	ENSG00000283403.1:ENSG00000267243.6	ENST00000592347.5:ENST00000593065.5	lncRNA	lncRNA	lncRNA	lncRNA	11	90	2	1.35833	1.72303	2.08773	0.0512983	0.00404379	0.158153	0.0578376
chr1	66931289	66931386	139499	0	+	0.298969	(0.28,0.32]	chr1	15642	5	INTRON	INTRON	MIER1	ENSG00000198160.15	ENST00000355977.10:ENST00000371018.7:ENST00000357692.6:ENST00000371016.5:ENST00000371014.5:ENST00000371012.6:ENST00000401041.6:ENST00000355356.3:ENST00000401042.7	protein_coding	protein_coding	protein_coding	protein_coding	7	69	2	1.52982	1.7229649999999999	1.91611	0.0539102	0.0379288	0.164153	0.157212
chr14	101768546	101768646	5818563	0	+	0.5	(0.476,0.515]	chr14	551819	16	INTRON	INTRON	PPP2R5C	ENSG00000078304.20	ENST00000694906.1:ENST00000422945.6:ENST00000554442.5:ENST00000556068.5:ENST00000328724.9:ENST00000554504.1:ENST00000553890.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	64	2	1.38864	1.72289	2.05714	0.0547008	0.0156961	0.182743	0.101453
chr14	101821002	101821098	5819095	0	+	0.385417	(0.378,0.408]	chr14	551846	21	EXON_LNCRNA	EXON_LNCRNA:INTRON	PPP2R5C	ENSG00000078304.20	ENST00000694906.1:ENST00000422945.6:ENST00000554442.5:ENST00000556068.5:ENST00000328724.9:ENST00000554504.1:ENST00000553890.1:ENST00000350249.7:ENST00000557621.5:ENST00000556946.1:ENST00000556307.5:ENST00000553730.5:ENST00000557714.1:ENST00000334743.9:ENST00000445439.7:ENST00000557095.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	60	2	1.71374	1.72269	1.73164	0.0441773	0.0274158	0.149888	0.136498
chr7	121173434	121173534	3395503	0	+	0.39	(0.378,0.408]	chr7	317781	234	INTRON	INTRON	CPED1	ENSG00000106034.18	ENST00000310396.10:ENST00000450913.6:ENST00000423795.5:ENST00000466055.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	60	2	1.71374	1.72269	1.73164	0.0441773	0.0274158	0.149888	0.136498
chr18	77974662	77974762	6990101	0	-	0.4	(0.378,0.408]	chr18	691890	14	INTRON	INTRON	LINC01029	ENSG00000265843.3	ENST00000657337.1:ENST00000669341.1:ENST00000671271.1:ENST00000668585.1:ENST00000666771.1:ENST00000667842.1:ENST00000661306.1:ENST00000662598.1:ENST00000662109.1:ENST00000662085.1:ENST00000583106.1:ENST00000582805.1	lncRNA	lncRNA	lncRNA	lncRNA	24	202	2	1.61192	1.7226400000000002	1.83336	0.00727811	0.00310871	0.0732278	0.0512667
chr7	139364110	139364209	3437630	0	+	0.464646	(0.44,0.476]	chr7	320318	34	INTRON	INTRON	LUC7L2:FMC1-LUC7L2	ENSG00000146963.18:ENSG00000269955.2	ENST00000541170.7:ENST00000541515.3:ENST00000608368.5:ENST00000619796.4:ENST00000354926.9:ENST00000435096.1:ENST00000456182.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	70	2	1.49801	1.72262	1.94723	0.0300375	0.0227424	0.142135	0.117618
chr1	100398323	100398423	173088	0	+	0.42	(0.408,0.44]	chr1	18824	71	INTRON	INTRON	CDC14A	ENSG00000079335.20	ENST00000646665.1:ENST00000644844.1:ENST00000635056.2:ENST00000647005.1:ENST00000647203.1:ENST00000644676.1:ENST00000361544.11:ENST00000370124.8:ENST00000336454.5:ENST00000644813.1:ENST00000455467.6:ENST00000646563.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	58	2	1.70409	1.722585	1.74108	0.0424099	0.028108	0.148082	0.137011
chr1	52884837	52884936	105337	0	+	0.393939	(0.378,0.408]	chr1	13774	28	INTRON	INTRON	ZYG11A	ENSG00000203995.10	ENST00000371532.5:ENST00000612017.4:ENST00000371528.2	protein_coding	protein_coding	protein_coding	protein_coding	13	104	2	1.25492	1.7224300000000001	2.18994	0.0466824	0.00448961	0.151623	0.0612035
chr5	138177065	138177163	2731420	0	-	0.479592	(0.476,0.515]	chr5	257188	1	SS5_PROX	SS5_PROX:INTRON	BRD8	ENSG00000112983.18	ENST00000254900.10:ENST00000402931.5:ENST00000230901.9:ENST00000454473.5:ENST00000418329.5:ENST00000441656.5:ENST00000411594.6:ENST00000512140.5:ENST00000428808.5:ENST00000432618.5:ENST00000425764.5:ENST00000450756.5:ENST00000515254.1:ENST00000430331.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	70	2	1.55902	1.72242	1.88582	0.0273268	0.0242957	0.130919	0.123904
chr13	32525252	32525352	5572717	0	-	0.24	[0,0.28]	chr13	532565	31	EXON_MRNA	EXON_MRNA:INTRON	N4BP2L2	ENSG00000244754.9	ENST00000357505.10:ENST00000399396.7:ENST00000504114.5:ENST00000446957.6:ENST00000674456.1:ENST00000674161.1:ENST00000674422.1:ENST00000674272.1:ENST00000674452.1:ENST00000674384.1:ENST00000505213.5:ENST00000674219.1:ENST00000267068.5:ENST00000674349.1:ENST00000674428.1:ENST00000503814.2:ENST00000674465.1:ENST00000674421.1:ENST00000674180.1:ENST00000674297.1:ENST00000674480.1:ENST00000674377.1:ENST00000674437.1:ENST00000674327.1:ENST00000674399.1:ENST00000674196.1:ENST00000674163.1:ENST00000511143.5:ENST00000674484.1:ENST00000475731.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	98	2	1.63606	1.7223950000000001	1.80873	0.0468781	0.0234525	0.151917	0.128429
chr12	76079435	76079535	5370173	0	-	0.35	(0.32,0.35]	chr12	512329	48	INTRON	INTRON	NAP1L1	ENSG00000187109.15	ENST00000618691.5:ENST00000393263.7:ENST00000431879.7:ENST00000547773.5:ENST00000544816.5:ENST00000542344.5:ENST00000535020.6:ENST00000549596.5:ENST00000552342.5:ENST00000548044.5:ENST00000550934.5:ENST00000551992.5:ENST00000548273.5:ENST00000551600.5:ENST00000547704.5:ENST00000549988.5:ENST00000547479.5:ENST00000549479.1:ENST00000551500.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	11	104	2	1.60939	1.72233	1.83527	0.0439266	0.00679363	0.14937	0.0744247
chr16	74580297	74580397	6525064	0	-	0.43	(0.408,0.44]	chr16	631842	171	INTRON	INTRON	GLG1	ENSG00000090863.12	ENST00000205061.9:ENST00000422840.7:ENST00000447066.6:ENST00000562090.5:ENST00000567951.5:ENST00000627032.2:ENST00000565260.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	83	2	1.70933	1.722325	1.73532	0.0194186	0.0189186	0.118303	0.109149
chr15	80099775	80099874	6071440	0	+	0.515152	(0.476,0.515]	chr15	578328	8	INTRON	INTRON	ZFAND6	ENSG00000086666.19	ENST00000613266.4:ENST00000561060.5:ENST00000559157.5:ENST00000261749.11:ENST00000561012.5:ENST00000564367.5:ENST00000558494.5:ENST00000618205.4:ENST00000560470.5:ENST00000560228.5:ENST00000559835.5:ENST00000559775.5:ENST00000558688.5:ENST00000560976.5:ENST00000560392.5:ENST00000558390.5:ENST00000558272.5:ENST00000557793.1:ENST00000616533.4:ENST00000558087.5:ENST00000558997.5:ENST00000558724.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	68	2	1.48023	1.7223	1.96437	0.0559072	0.0124351	0.18407	0.0920366
chr13	95256526	95256626	5639427	0	-	0.49	(0.476,0.515]	chr13	537167	84	INTRON	INTRON	ABCC4	ENSG00000125257.16	ENST00000645237.2:ENST00000643051.1:ENST00000643842.1:ENST00000646439.1:ENST00000643816.1:ENST00000536256.3:ENST00000643556.1:ENST00000629385.1:ENST00000642524.1:ENST00000645532.1:ENST00000644471.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	42	2	1.52615	1.72216	1.91817	0.0739267	0.0459211	0.190914	0.164984
chr22	49646031	49646131	7602548	0	-	0.48	(0.476,0.515]	chr22	778594	186	INTRON	INTRON	MIR3667HG	ENSG00000188511.13	ENST00000414287.5:ENST00000416411.1:ENST00000689875.1:ENST00000400023.5:ENST00000405854.5	lncRNA	lncRNA	lncRNA	lncRNA	5	42	2	1.52615	1.72216	1.91817	0.0739267	0.0459211	0.190914	0.164984
chr17	82460870	82460970	6692285	0	+	0.42	(0.408,0.44]	chr17	654552	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NARF	ENSG00000141562.19	ENST00000579198.5:ENST00000390006.8:ENST00000583181.5:ENST00000584192.5:ENST00000580296.5:ENST00000345415.11:ENST00000581202.5:ENST00000374611.9:ENST00000582585.1:ENST00000457415.7:ENST00000581795.5:ENST00000584411.5:ENST00000577812.5:ENST00000581743.5:ENST00000577432.5:ENST00000582907.5:ENST00000309794.16:ENST00000578082.5:ENST00000580748.1:ENST00000577410.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	76	2	1.24904	1.72214	2.19524	0.055886	0.00990486	0.18407	0.0838372
chr6	85639151	85639245	3151412	0	-	0.446809	(0.44,0.476]	chr6	293897	11	INTRON	INTRON	ENSG00000271793:SYNCRIP	ENSG00000271793.2:ENSG00000135316.19	ENST00000682083.1:ENST00000683074.1:ENST00000682504.1:ENST00000682106.1:ENST00000683364.1:ENST00000683436.1:ENST00000684220.1:ENST00000684462.1:ENST00000616122.5:ENST00000678528.1:ENST00000676637.1:ENST00000677771.1:ENST00000355238.11:ENST00000678878.1:ENST00000677481.1:ENST00000676630.1:ENST00000678618.1:ENST00000676542.1:ENST00000677059.1:ENST00000444272.2:ENST00000678899.1:ENST00000369622.8:ENST00000678355.1:ENST00000676688.1:ENST00000677514.1:ENST00000678816.1:ENST00000678930.1:ENST00000678589.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	18	152	2	1.42119	1.7221199999999999	2.02305	0.0224591	0.00196897	0.124921	0.040235
chr15	65756972	65757071	6209439	0	-	0.414141	(0.408,0.44]	chr15	592605	1	INTRON	INTRON	DENND4A	ENSG00000174485.16	ENST00000443035.8:ENST00000431932.6:ENST00000635620.2:ENST00000564674.5:ENST00000568515.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	55	2	1.62843	1.722075	1.81572	0.0626779	0.025242	0.175915	0.133676
chr1	40384276	40384375	81549	0	+	0.434343	(0.408,0.44]	chr1	10553	92	INTRON	INTRON	SMAP2	ENSG00000084070.12	ENST00000435168.6:ENST00000372718.8:ENST00000372708.5	protein_coding	protein_coding	protein_coding	protein_coding	13	106	2	1.54549	1.72204	1.89859	0.0228907	0.00624957	0.118056	0.0719778
chr7	138463201	138463301	3434670	0	+	0.44	(0.408,0.44]	chr7	319959	15	INTRON	INTRON	TRIM24	ENSG00000122779.18	ENST00000343526.9:ENST00000415680.6:ENST00000497516.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	74	2	1.62122	1.721985	1.82275	0.0394247	0.0123226	0.143072	0.097243
chr4	126622789	126622889	2236937	0	-	0.39	(0.378,0.408]	chr4	219023	1573	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	11	84	2	1.34169	1.721905	2.10212	0.0354056	0.0141232	0.150868	0.0959618
chr1	28892972	28893072	58738	0	+	0.53	(0.515,0.57]	chr1	7613	54	INTRON	INTRON	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000647918.1:ENST00000646800.1:ENST00000644342.1:ENST00000646189.1:ENST00000482464.6:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	12	84	2	1.47702	1.7219	1.96678	0.0421022	0.00296583	0.148082	0.0500431
chr1	183486366	183486466	273646	0	+	0.39	(0.378,0.408]	chr1	32019	121	INTRON	INTRON	SMG7	ENSG00000116698.22	ENST00000440812.7:ENST00000367537.7:ENST00000688051.1:ENST00000685780.1:ENST00000508461.5:ENST00000347615.6:ENST00000419169.5:ENST00000444547.6:ENST00000507469.5:ENST00000515829.6:ENST00000367538.1:ENST00000502375.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	60	2	1.66594	1.72188	1.77782	0.0388177	0.0320222	0.144995	0.143072
chr22	19095778	19095878	7551748	0	-	0.39	(0.378,0.408]	chr22	771903	59	INTRON	INTRON	DGCR2	ENSG00000070413.20	ENST00000537045.5:ENST00000545799.5:ENST00000263196.12:ENST00000389262.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	60	2	1.66594	1.72188	1.77782	0.0388177	0.0320222	0.144995	0.143072
chrX	24074873	24074969	7630944	0	+	0.489583	(0.476,0.515]	chrX	781493	11	INTRON	INTRON	EIF2S3	ENSG00000130741.11	ENST00000253039.9:ENST00000457332.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	33	260	2	1.60461	1.72187	1.83913	0.0061952	0.00102557	0.0678241	0.0294094
chr9	136443422	136443522	4374606	0	-	0.54	(0.515,0.57]	chr9	402943	2	SS5_PROX	SS5_PROX:INTRON	SEC16A	ENSG00000148396.19	ENST00000467838.2:ENST00000290037.10:ENST00000313050.11:ENST00000371706.8:ENST00000453963.5:ENST00000277537.10:ENST00000313084.9:ENST00000684901.1:ENST00000689049.1:ENST00000689439.1:ENST00000688461.1:ENST00000688052.1:ENST00000690691.1:ENST00000431893.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	55	2	1.32981	1.721825	2.11384	0.0640038	0.0118599	0.199279	0.0899583
chr19	16091046	16091145	7026124	0	+	0.535354	(0.515,0.57]	chr19	699207	15	INTRON	INTRON	TPM4	ENSG00000167460.17	ENST00000646974.2:ENST00000586499.6:ENST00000647464.2:ENST00000668959.1:ENST00000590180.3:ENST00000655004.1:ENST00000642789.1:ENST00000653979.1:ENST00000645471.1:ENST00000659595.1:ENST00000647037.1:ENST00000587201.6:ENST00000643579.2:ENST00000586193.6:ENST00000643494.1:ENST00000670382.1:ENST00000300933.9:ENST00000646575.1:ENST00000586833.7:ENST00000642221.1:ENST00000658224.1:ENST00000344824.11:ENST00000588410.2:ENST00000657915.1:ENST00000588483.2:ENST00000664983.1:ENST00000663894.1:ENST00000588032.6:ENST00000653961.1:ENST00000591645.3:ENST00000658489.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	43	2	1.49871	1.7218200000000001	1.94493	0.0770828	0.0204583	0.196285	0.122204
chr1	224427605	224427704	645370	0	-	0.393939	(0.378,0.408]	chr1	76289	25	INTRON	INTRON	WDR26	ENSG00000162923.17	ENST00000414423.9:ENST00000678917.1:ENST00000651911.2:ENST00000678879.1:ENST00000486652.5:ENST00000678555.1:ENST00000443112.6:ENST00000489825.5:ENST00000477425.1:ENST00000445239.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	73	2	1.53546	1.72179	1.90812	0.0265688	0.0264295	0.134088	0.122506
chr4	82354339	82354431	2177330	0	-	0.271739	[0,0.28]	chr4	214119	3	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HNRNPD	ENSG00000138668.19	ENST00000313899.12:ENST00000353341.8:ENST00000514325.1:ENST00000352301.8:ENST00000514671.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	129	2	1.46932	1.72179	1.97426	0.0275926	0.023847899999999998	0.129075	0.123904
chr16	89408953	89409053	6542778	0	-	0.49	(0.476,0.515]	chr16	634254	48	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000647238.1:ENST00000644045.1:ENST00000643147.1:ENST00000644139.1:ENST00000568512.6:ENST00000566973.1:ENST00000562211.2:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	70	2	1.23561	1.7217500000000001	2.20789	0.0722004	0.00820497	0.187533	0.081115
chr22	49579756	49579856	7601877	0	-	0.45	(0.44,0.476]	chr22	778566	1382	INTRON	INTRON	MIR3667HG	ENSG00000188511.13	ENST00000414287.5:ENST00000416411.1	lncRNA	lncRNA	lncRNA	lncRNA	8	64	2	1.4962	1.721715	1.94723	0.0392301	0.0227424	0.161534	0.117618
chr15	63733645	63733741	6199882	0	-	0.4375	(0.408,0.44]	chr15	591364	1	INTRON	INTRON	HERC1	ENSG00000103657.14	ENST00000443617.7:ENST00000561400.1	protein_coding	protein_coding	protein_coding	protein_coding	5	42	2	1.69566	1.721705	1.74775	0.0735403	0.0453922	0.190238	0.164236
chr3	19968547	19968647	1376250	0	+	0.44	(0.408,0.44]	chr3	145051	153	INTRON	INTRON	RAB5A	ENSG00000144566.11	ENST00000273047.9:ENST00000412966.5:ENST00000446547.5:ENST00000422242.1:ENST00000469122.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	42	2	1.69566	1.721705	1.74775	0.0735403	0.0453922	0.190238	0.164236
chr3	155926165	155926265	1537697	0	+	0.43	(0.408,0.44]	chr3	160158	4	INTRON	INTRON	GMPS	ENSG00000163655.16	ENST00000496455.7:ENST00000295920.7	protein_coding	protein_coding	protein_coding	protein_coding	5	42	2	1.69566	1.721705	1.74775	0.0735403	0.0453922	0.190238	0.164236
chr3	172385884	172385984	1563044	0	+	0.41	(0.408,0.44]	chr3	161691	44	INTRON	INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000336824.8:ENST00000416957.5	protein_coding	protein_coding	protein_coding	protein_coding	5	42	2	1.69566	1.721705	1.74775	0.0735403	0.0453922	0.190238	0.164236
chr9	131262290	131262390	4362002	0	-	0.42	(0.408,0.44]	chr9	401064	2	SS5_PROX	SS5_PROX:INTRON	FAM78A	ENSG00000126882.13	ENST00000372269.7:ENST00000247295.4:ENST00000372271.4:ENST00000464831.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	42	2	1.69566	1.721705	1.74775	0.0735403	0.0453922	0.190238	0.164236
chr12	119680824	119680924	5234969	0	+	0.36	(0.35,0.378]	chr12	496719	6	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	PRKAB1	ENSG00000111725.11	ENST00000541640.5:ENST00000229328.10:ENST00000540121.5:ENST00000542698.1:ENST00000537057.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	71	2	1.6599	1.721615	1.78333	0.0545616	0.0148511	0.165292	0.106937
chr6	31746608	31746701	2843553	0	+	0.451613	(0.44,0.476]	chr6	267796	4	INTRON	INTRON	MSH5:MSH5-SAPCD1	ENSG00000204410.16:ENSG00000255152.8	ENST00000375755.8:ENST00000375750.9:ENST00000650702.1:ENST00000493662.6:ENST00000375703.7:ENST00000375740.7:ENST00000423982.6:ENST00000463144.5:ENST00000450148.5:ENST00000497269.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	14	112	2	1.4337	1.721155	2.00861	0.0282202	0.00380912	0.125657	0.0562562
chr15	41380282	41380378	6005264	0	+	0.375	(0.35,0.378]	chr15	571367	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	NUSAP1	ENSG00000137804.14	ENST00000668273.1:ENST00000260359.10:ENST00000558123.5:ENST00000414849.6:ENST00000559596.6:ENST00000560747.5:ENST00000560177.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	107	2	1.39029	1.7208999999999999	2.05151	0.026172	0.00998861	0.133676	0.0843858
chr3	138824612	138824712	1831399	0	-	0.51	(0.476,0.515]	chr3	184062	277	INTRON	INTRON	PIK3CB	ENSG00000051382.9	ENST00000674063.1:ENST00000477593.5:ENST00000462898.5:ENST00000483968.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	97	2	1.59826	1.72086	1.84346	0.0184438	0.0114152	0.108861	0.095586
chr4	56427570	56427670	2151579	0	-	0.47	(0.44,0.476]	chr4	211799	194	INTRON	INTRON	PPAT	ENSG00000128059.8	ENST00000264220.6:ENST00000510643.5:ENST00000507724.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	59	2	1.68545	1.72086	1.75627	0.0380723	0.0322071	0.157702	0.132543
chr20	32395518	32395618	7256198	0	+	0.35	(0.32,0.35]	chr20	737076	231	INTRON	INTRON	ASXL1	ENSG00000171456.21	ENST00000651418.1:ENST00000375687.10:ENST00000613218.4:ENST00000644587.1:ENST00000620121.4:ENST00000646985.1:ENST00000643168.1:ENST00000306058.9:ENST00000645688.1:ENST00000470145.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	56	2	1.49965	1.7208350000000001	1.94202	0.0542985	0.0486128	0.182243	0.153946
chr10	43392530	43392630	4605338	0	-	0.31	(0.28,0.32]	chr10	424249	42	INTRON	INTRON	HNRNPF	ENSG00000169813.17	ENST00000356053.7:ENST00000357065.8:ENST00000544000.5:ENST00000443950.6:ENST00000682386.1:ENST00000337970.7:ENST00000477108.5:ENST00000498176.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	83	2	1.33399	1.720795	2.1076	0.0743182	0.0133585	0.191786	0.100772
chr1	6549255	6549333	368068	0	-	0.410256	(0.408,0.44]	chr1	43227	1	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	NOL9	ENSG00000162408.11	ENST00000377705.6:ENST00000460777.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	14	114	2	1.54774	1.72072	1.8937	0.0161089	0.00928733	0.101453	0.0855292
chrX	24078038	24078135	7630977	0	+	0.536082	(0.515,0.57]	chrX	781497	14	UTR3	UTR3:EXON_MRNA	EIF2S3	ENSG00000130741.11	ENST00000253039.9	protein_coding	protein_coding	protein_coding	protein_coding	35	239	2	1.55311	1.72072	1.88833	0.00415498	9.06335e-4	0.0590549	0.0278396
chr2	39074272	39074372	1101870	0	-	0.48	(0.476,0.515]	chr2	118302	57	INTRON	INTRON	SOS1	ENSG00000115904.15	ENST00000692089.1:ENST00000402219.8:ENST00000690876.1:ENST00000395038.6:ENST00000691229.1:ENST00000689668.1:ENST00000690679.1:ENST00000461545.2:ENST00000451331.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	50	2	1.52615	1.7207	1.91525	0.0739267	0.0232571	0.190914	0.127416
chr3	141885453	141885553	1526163	0	+	0.48	(0.476,0.515]	chr3	159005	75	INTRON	INTRON	ATP1B3	ENSG00000069849.11	ENST00000475483.5:ENST00000465172.5:ENST00000286371.8:ENST00000466678.5:ENST00000462082.1:ENST00000495216.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	50	2	1.52615	1.7207	1.91525	0.0739267	0.0232571	0.190914	0.127416
chr6	147703172	147703271	2991028	0	+	0.484848	(0.476,0.515]	chr6	280167	103	INTRON	INTRON	ENSG00000227681	ENSG00000227681.5	ENST00000427015.1:ENST00000432506.5:ENST00000442094.5:ENST00000434985.1	lncRNA	lncRNA	lncRNA	lncRNA	6	50	2	1.52615	1.7207	1.91525	0.0739267	0.0232571	0.190914	0.127416
chr15	34390168	34390268	6132781	0	-	0.31	(0.28,0.32]	chr15	584241	4	SS3_PROX	SS3_PROX:INTRON	GOLGA8A	ENSG00000175265.18	ENST00000359187.5:ENST00000473125.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	76	2	1.47751	1.7206350000000001	1.96376	0.0480066	0.0351404	0.153019	0.149985
chr3	15771189	15771288	1623552	0	-	0.50505	(0.476,0.515]	chr3	168009	45	INTRON	INTRON	ANKRD28	ENSG00000206560.12	ENST00000399451.6:ENST00000624145.3:ENST00000683139.1:ENST00000412318.5:ENST00000497037.5:ENST00000451422.1:ENST00000498524.5:ENST00000439830.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	50	2	1.63838	1.72061	1.80284	0.0555021	0.033161	0.165463	0.145899
chr3	6555488	6555588	1356796	0	+	0.29	(0.28,0.32]	chr3	142508	424	INTRON	INTRON	ENSG00000189229	ENSG00000189229.12	ENST00000660158.1:ENST00000433639.1:ENST00000655754.1:ENST00000653839.1:ENST00000662846.1:ENST00000659876.1:ENST00000414438.2:ENST00000658468.1:ENST00000414603.1:ENST00000669512.1:ENST00000667028.1:ENST00000655541.1:ENST00000668643.1:ENST00000671568.1:ENST00000671036.1:ENST00000669798.1:ENST00000655753.1:ENST00000655856.1:ENST00000658398.1:ENST00000661518.1:ENST00000661279.1:ENST00000655495.1:ENST00000663041.1:ENST00000659827.1:ENST00000667716.1:ENST00000662508.1:ENST00000668416.1:ENST00000658133.1:ENST00000659651.1:ENST00000342990.4:ENST00000660054.1:ENST00000671370.1	lncRNA	lncRNA	lncRNA	lncRNA	11	115	2	1.33496	1.7205599999999999	2.10616	0.0618816	0.00457639	0.174514	0.0622676
chr12	111846014	111846113	5228767	0	+	0.373737	(0.35,0.378]	chr12	495634	27	INTRON	INTRON	MAPKAPK5	ENSG00000089022.14	ENST00000550735.7:ENST00000553053.5:ENST00000546394.1:ENST00000551404.6:ENST00000549875.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	47	2	1.6122	1.720535	1.82887	0.0616849	0.0584878	0.189395	0.174021
chr2	26045679	26045779	713215	0	+	0.35	(0.32,0.35]	chr2	82440	30	INTRON	INTRON	RAB10	ENSG00000084733.11	ENST00000264710.5:ENST00000495146.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	74	2	1.3612	1.7205249999999999	2.07985	0.0548037	0.0303092	0.165463	0.143025
chr16	23871819	23871918	6324118	0	+	0.292929	(0.28,0.32]	chr16	605697	26	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000645517.1:ENST00000498739.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	115	2	1.56174	1.720445	1.87915	0.039921	0.00813561	0.143115	0.0810802
chr3	9991198	9991295	1362012	0	+	0.453608	(0.44,0.476]	chr3	143392	21	INTRON	INTRON	EMC3-AS1	ENSG00000180385.9	ENST00000692142.1:ENST00000366264.6:ENST00000693066.1:ENST00000326237.3:ENST00000440568.1:ENST00000438698.1:ENST00000424904.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	7	58	2	1.49356	1.720395	1.94723	0.0537505	0.0227424	0.180803	0.117618
chr19	52650147	52650246	7206725	0	-	0.434343	(0.408,0.44]	chr19	731394	119	INTRON	INTRON	ZNF83	ENSG00000167766.20	ENST00000600714.5:ENST00000601257.5:ENST00000594682.6:ENST00000687234.1:ENST00000598536.5:ENST00000595171.5:ENST00000596440.5:ENST00000602232.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	43	2	1.58763	1.7203400000000002	1.85305	0.0639217	0.0543543	0.182243	0.177824
chr16	30330285	30330385	6473320	0	-	0.45	(0.44,0.476]	chr16	625713	240	INTRON	INTRON	SMG1P5	ENSG00000183604.15	ENST00000529428.5:ENST00000411546.4:ENST00000691460.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	8	65	2	1.45853	1.719995	1.98146	0.0470887	0.0186013	0.152251	0.117264
chr1	198288049	198288149	288980	0	+	0.42	(0.408,0.44]	chr1	33206	86	INTRON	INTRON	NEK7	ENSG00000151414.15	ENST00000367385.9:ENST00000538004.5:ENST00000493790.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	65	2	1.69172	1.719925	1.74813	0.0486032	0.0163902	0.153946	0.109715
chr9	131179108	131179207	4216180	0	+	0.434343	(0.408,0.44]	chr9	386630	3	INTRON	INTRON	NUP214	ENSG00000126883.19	ENST00000695497.1:ENST00000695498.1:ENST00000695496.1:ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000525980.5:ENST00000526346.5:ENST00000531929.5:ENST00000651334.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	23	188	2	1.6841	1.7199200000000001	1.75574	0.00529077	0.00441045	0.0657112	0.0587529
chr17	20869881	20869980	6576077	0	+	0.333333	(0.32,0.35]	chr17	639372	8	INTRON	INTRON	CCDC144NL-AS1	ENSG00000233098.10	ENST00000577537.5:ENST00000692759.1:ENST00000443508.8:ENST00000692309.1:ENST00000439794.6:ENST00000417232.6:ENST00000583962.2:ENST00000582324.5:ENST00000577860.5	lncRNA	lncRNA	lncRNA	lncRNA	24	226	2	1.45999	1.719805	1.97962	0.0188198	0.00122345	0.108861	0.0324803
chr9	130742054	130742154	4214145	0	+	0.53	(0.515,0.57]	chr9	386427	272	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000393293.4	protein_coding	protein_coding	protein_coding	protein_coding	19	128	2	1.49583	1.71977	1.94371	0.0115622	0.00287969	0.0962115	0.0475859
chr6	53292463	53292558	3107620	0	-	0.463158	(0.44,0.476]	chr6	291036	1	INTRON	INTRON	ELOVL5	ENSG00000012660.14	ENST00000370918.8:ENST00000542638.5:ENST00000304434.11:ENST00000485336.5:ENST00000465983.5:ENST00000486973.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	29	230	2	1.47826	1.71973	1.9612	0.011154	7.81101e-4	0.0877435	0.0257169
chr7	107264660	107264760	3610023	0	-	0.39	(0.378,0.408]	chr7	336648	59	INTRON	INTRON	COG5	ENSG00000164597.15	ENST00000297135.9:ENST00000347053.8:ENST00000393603.7	protein_coding	protein_coding	protein_coding	protein_coding	7	60	2	1.63458	1.7197049999999998	1.80483	0.0573057	0.0201276	0.167723	0.121243
chr17	82268713	82268812	6852787	0	-	0.444444	(0.44,0.476]	chr17	679167	13	INTRON	INTRON	CSNK1D	ENSG00000141551.15	ENST00000398519.9:ENST00000314028.11:ENST00000581241.5:ENST00000392334.6:ENST00000403276.7:ENST00000582844.5:ENST00000580446.1:ENST00000581660.5:ENST00000578194.5:ENST00000579316.5:ENST00000584472.5:ENST00000585026.1:ENST00000579308.1:ENST00000581655.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	70	2	1.29261	1.7196349999999998	2.14666	0.0583425	0.0116436	0.189184	0.0889659
chr1	52864257	52864357	105125	0	+	0.54	(0.515,0.57]	chr1	13745	1	SS5_PROX	SS5_PROX:INTRON	ZYG11A	ENSG00000203995.10	ENST00000371532.5:ENST00000612017.4:ENST00000371528.2	protein_coding	protein_coding	protein_coding	protein_coding	7	49	2	1.62814	1.71957	1.811	0.035203	0.0325989	0.150193	0.133687
chr16	85193462	85193562	6411763	0	+	0.55	(0.515,0.57]	chr16	615455	82	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	8	56	2	1.57902	1.719545	1.86007	0.0526611	0.0229035	0.178401	0.118056
chr7	127910704	127910804	3405004	0	+	0.41	(0.408,0.44]	chr7	318161	55	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000465900.5:ENST00000486037.1:ENST00000484767.5:ENST00000492840.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	87	2	1.17742	1.71951	2.2616	0.0738735	0.00321416	0.190914	0.0523065
chr2	208355894	208355993	992949	0	+	0.353535	(0.35,0.378]	chr2	106827	7	UTR3	UTR3:EXON_MRNA	PIKFYVE	ENSG00000115020.17	ENST00000264380.9	protein_coding	protein_coding	protein_coding	protein_coding	6	55	2	1.5118	1.71942	1.92704	0.0789277	0.0228255	0.198963	0.125469
chr15	101966323	101966421	6117517	0	+	0.591837	(0.57,1]	chr15	582293	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	WASH3P	ENSG00000185596.16	ENST00000559884.5:ENST00000558686.5:ENST00000354296.9:ENST00000559163.6:ENST00000557932.5:ENST00000558784.5:ENST00000560956.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	8	34	2	1.55956	1.7192850000000002	1.87901	0.0448639	0.0152867	0.149888	0.108569
chr16	89593221	89593319	6421113	0	+	0.326531	(0.32,0.35]	chr16	616407	16	INTRON	INTRON	CPNE7	ENSG00000178773.15	ENST00000319518.13:ENST00000268720.9:ENST00000529800.5:ENST00000568977.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	91	2	1.59364	1.719125	1.84461	0.0413426	0.0150305	0.161557	0.0994339
chr17	37312057	37312157	6762096	0	-	0.39	(0.378,0.408]	chr17	664944	124	INTRON	INTRON	ACACA	ENSG00000278540.5	ENST00000616317.5:ENST00000614428.4:ENST00000613146.4:ENST00000615229.4:ENST00000621960.1:ENST00000617548.1:ENST00000616352.4:ENST00000614789.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	85	2	1.58299	1.71903	1.85507	0.0329718	0.0109894	0.133816	0.0927187
chr19	36550491	36550590	7174670	0	-	0.444444	(0.44,0.476]	chr19	725068	18	INTRON	INTRON	ZNF529	ENSG00000186020.13	ENST00000591340.6:ENST00000334116.7:ENST00000586115.5:ENST00000585983.5:ENST00000585960.5	protein_coding	protein_coding	protein_coding	protein_coding	17	137	2	1.64909	1.718985	1.78888	0.0105848	0.00575567	0.0861859	0.068224
chr16	2226999	2227098	6277738	0	+	0.474747	(0.44,0.476]	chr16	600294	27	INTRON	INTRON	E4F1	ENSG00000167967.16	ENST00000565090.5:ENST00000301727.9:ENST00000564139.5:ENST00000562589.5:ENST00000565413.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	80	2	1.28061	1.718935	2.15726	0.0639824	0.00508124	0.177882	0.0646039
chr1	147263726	147263823	212435	0	+	0.340206	(0.32,0.35]	chr1	23512	35	INTRON	INTRON	CHD1L	ENSG00000131778.20	ENST00000652587.1:ENST00000652616.1:ENST00000652494.1:ENST00000651207.1:ENST00000650721.1:ENST00000651226.1:ENST00000652161.1:ENST00000651510.1:ENST00000361293.10:ENST00000652278.1:ENST00000369259.4:ENST00000467213.5:ENST00000369258.8:ENST00000622533.4:ENST00000651410.1:ENST00000652486.1:ENST00000652346.1:ENST00000651407.1:ENST00000650828.1:ENST00000651070.1:ENST00000650714.1:ENST00000651420.1:ENST00000652357.1:ENST00000488864.5:ENST00000652188.1:ENST00000651820.1:ENST00000651231.1:ENST00000651206.1:ENST00000431239.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	68	2	1.54741	1.718855	1.8903	0.0473733	0.0298043	0.169265	0.129138
chr16	2253505	2253603	6431543	0	-	0.622449	(0.57,1]	chr16	618778	5	UTR3	UTR3:EXON_MRNA	RNPS1	ENSG00000205937.12	ENST00000397086.6:ENST00000566458.5:ENST00000320225.10:ENST00000562205.1:ENST00000566397.5:ENST00000565678.5:ENST00000561718.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	36	2	1.34554	1.7188050000000001	2.09207	0.0508971	0.0121228	0.176247	0.090965
chr10	68332635	68332735	4440764	0	+	0.69	(0.57,1]	chr10	409479	4	SS5_PROX	SS5_PROX:INTRON	HNRNPH3	ENSG00000096746.18	ENST00000469172.5:ENST00000461310.5:ENST00000265866.12:ENST00000480987.5:ENST00000486854.5:ENST00000467249.1:ENST00000354695.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	24	98	2	1.24046	1.718785	2.19711	0.0238643	2.37905e-4	0.129075	0.0141681
chr4	55404535	55404635	1960676	0	+	0.43	(0.408,0.44]	chr4	196553	8	INTRON	INTRON	TMEM165	ENSG00000134851.13	ENST00000381334.10:ENST00000506198.5:ENST00000508404.5:ENST00000511710.1:ENST00000502797.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	61	478	2	1.66965	1.7187000000000001	1.76775	0.00266867	5.9591e-4	0.0463689	0.0222109
chr7	135663293	135663392	3429287	0	+	0.363636	(0.35,0.378]	chr7	319866	3	INTRON	INTRON	STMP1	ENSG00000243317.8	ENST00000509448.5:ENST00000507606.3:ENST00000515197.2:ENST00000422968.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	73	2	1.68908	1.71867	1.74826	0.0301354	0.0279529	0.142482	0.124524
chr3	47118651	47118751	1681146	0	-	0.35	(0.32,0.35]	chr3	171605	15	INTRON	INTRON	SETD2	ENSG00000181555.22	ENST00000691544.1:ENST00000638947.2:ENST00000686876.1:ENST00000431180.5:ENST00000409792.4:ENST00000330022.11:ENST00000686773.1:ENST00000685005.1:ENST00000690461.1:ENST00000685505.1:ENST00000692883.1:ENST00000693321.1:ENST00000688290.1:ENST00000691902.1:ENST00000690157.1:ENST00000445387.5:ENST00000685399.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	96	2	1.49732	1.71863	1.93994	0.0455974	0.0084207	0.149888	0.0825628
chr9	133362503	133362599	4370301	0	-	0.614583	(0.57,1]	chr9	402163	12	UTR3	UTR3:EXON_MRNA	SURF4	ENSG00000148248.14	ENST00000545297.5:ENST00000613129.4:ENST00000618229.4:ENST00000371989.8	protein_coding	protein_coding	protein_coding	protein_coding	7	29	2	1.66359	1.71862	1.77365	0.0670385	0.0224545	0.183051	0.124921
chr19	2326926	2327022	7115829	0	-	0.572917	(0.57,1]	chr19	715323	4	INTRON	INTRON	LSM7	ENSG00000130332.15	ENST00000587502.2:ENST00000585409.2:ENST00000252622.15:ENST00000585395.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	28	2	1.2666	1.71843	2.17026	0.0788045	0.0220522	0.198736	0.123836
chr5	138348344	138348442	2494836	0	+	0.489796	(0.476,0.515]	chr5	238465	15	UTR3	UTR3:EXON_MRNA	FAM53C	ENSG00000120709.11	ENST00000239906.10	protein_coding	protein_coding	protein_coding	protein_coding	6	48	2	1.63962	1.718275	1.79693	0.0649782	0.0346854	0.179417	0.148144
chr6	35852872	35852972	3088122	0	-	0.37	(0.35,0.378]	chr6	288820	99	INTRON	INTRON	SRPK1	ENSG00000096063.16	ENST00000373825.7:ENST00000423325.6:ENST00000346162.10:ENST00000361690.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	72	2	1.50939	1.718215	1.92704	0.0423993	0.0228255	0.148082	0.125469
chr16	89487438	89487538	6543571	0	-	0.47	(0.44,0.476]	chr16	634281	558	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	12	96	2	1.41212	1.718165	2.02421	0.0358041	0.00536295	0.138791	0.0663076
chr16	89479151	89479251	6543488	0	-	0.48	(0.476,0.515]	chr16	634281	475	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	64	2	1.33919	1.71808	2.09697	0.06316	0.0136924	0.197199	0.0949306
chr17	27296005	27296102	6580550	0	+	0.546392	(0.515,0.57]	chr17	639598	12	INTRON	INTRON	WSB1	ENSG00000109046.15	ENST00000581440.5:ENST00000578312.5:ENST00000583742.1:ENST00000467843.6:ENST00000579733.5:ENST00000583193.5:ENST00000262394.7:ENST00000427287.6:ENST00000581185.5:ENST00000584354.1:ENST00000583786.5:ENST00000581089.1:ENST00000348811.6:ENST00000582208.1:ENST00000584114.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	13	87	2	1.60826	1.71807	1.82788	0.0123396	0.0118853	0.0962115	0.0914341
chr8	52709687	52709787	3951061	0	-	0.41	(0.408,0.44]	chr8	362390	224	INTRON	INTRON	RB1CC1	ENSG00000023287.13	ENST00000025008.10:ENST00000435644.6:ENST00000521611.1:ENST00000518710.5:ENST00000517963.1:ENST00000518211.1:ENST00000518468.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	18	138	2	1.24794	1.7180499999999999	2.18816	0.03068	0.00216797	0.143385	0.0417893
chr10	101785111	101785206	4680622	0	-	0.410526	(0.408,0.44]	chr10	431933	8	UTR3	UTR3:EXON_MRNA	OGA	ENSG00000198408.14	ENST00000439817.5:ENST00000361464.8	protein_coding	protein_coding	protein_coding	protein_coding	20	161	2	1.52464	1.7179250000000001	1.91121	0.0205892	0.00140193	0.110999	0.034317
chr13	25310015	25310115	5457257	0	+	0.46	(0.44,0.476]	chr13	522893	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	NUP58	ENSG00000139496.17	ENST00000481980.2:ENST00000490231.6:ENST00000695571.1:ENST00000477876.2:ENST00000695572.1:ENST00000463407.6:ENST00000695573.1:ENST00000381736.8:ENST00000695583.1:ENST00000465068.5:ENST00000466694.6:ENST00000381718.8:ENST00000695575.1:ENST00000695574.1:ENST00000495460.2:ENST00000381747.7:ENST00000695576.1:ENST00000394327.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	75	2	1.38039	1.7179250000000001	2.05546	0.0762718	0.00467486	0.195539	0.0631417
chr16	23862232	23862332	6324021	0	+	0.46	(0.44,0.476]	chr16	605693	245	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000498058.1:ENST00000645517.1:ENST00000498739.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	99	2	1.60118	1.7178849999999999	1.83459	0.0198542	0.0107718	0.109608	0.0920575
chr9	128168165	128168261	4357601	0	-	0.541667	(0.515,0.57]	chr9	400244	6	INTRON	INTRON	CIZ1	ENSG00000148337.22	ENST00000651955.1:ENST00000471773.5:ENST00000372938.10:ENST00000372954.5:ENST00000538431.5:ENST00000357558.9:ENST00000629610.2:ENST00000372948.7:ENST00000277465.8:ENST00000634901.1:ENST00000415526.5:ENST00000471839.5:ENST00000485001.1:ENST00000476727.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	16	107	2	1.7112	1.7176200000000001	1.72404	0.0139408	0.00464524	0.095788	0.0629477
chr1	112912819	112912916	523702	0	-	0.350515	(0.35,0.378]	chr1	61661	11	UTR3	UTR3:EXON_MRNA	SLC16A1	ENSG00000155380.13	ENST00000679803.1:ENST00000369626.8:ENST00000443580.6:ENST00000538576.5:ENST00000429288.2:ENST00000458229.6	protein_coding	protein_coding	protein_coding	protein_coding	27	236	2	1.36192	1.7176150000000001	2.07331	0.0147337	0.00130856	0.106702	0.0331539
chr10	48049383	48049482	4609621	0	-	0.414141	(0.408,0.44]	chr10	424706	100	INTRON	INTRON	ENSG00000289444	ENSG00000289444.1	ENST00000687180.1	lncRNA	lncRNA	lncRNA	lncRNA	9	74	2	1.50652	1.717615	1.92871	0.0410276	0.0127189	0.1451	0.0986242
chr11	62854312	62854410	4961875	0	-	0.459184	(0.44,0.476]	chr11	467083	14	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SNHG1	ENSG00000255717.8	ENST00000689147.1:ENST00000686500.1:ENST00000665371.1:ENST00000687243.1:ENST00000537869.6:ENST00000686081.1:ENST00000686670.1:ENST00000690476.1:ENST00000688102.1:ENST00000691255.1:ENST00000539303.6:ENST00000538654.6:ENST00000540725.6:ENST00000658540.1:ENST00000685229.1:ENST00000686478.1:ENST00000686008.1:ENST00000692887.1:ENST00000691324.1:ENST00000692454.1:ENST00000685577.1:ENST00000693734.1:ENST00000537068.5:ENST00000537925.5:ENST00000541416.6:ENST00000541578.6:ENST00000537024.6:ENST00000686740.1:ENST00000663967.1:ENST00000670323.1:ENST00000660547.1:ENST00000689664.1:ENST00000690542.1:ENST00000539921.7:ENST00000687029.1:ENST00000661616.1:ENST00000670469.1:ENST00000664307.1:ENST00000665512.1:ENST00000656268.1:ENST00000535689.6:ENST00000663237.1:ENST00000544550.6:ENST00000660730.1:ENST00000660960.1:ENST00000662229.1:ENST00000670729.1:ENST00000655919.1:ENST00000671236.1:ENST00000667655.1:ENST00000653690.1:ENST00000661936.1:ENST00000544983.2:ENST00000535076.6:ENST00000656240.1:ENST00000539975.5:ENST00000656589.1:ENST00000545920.2:ENST00000537965.6:ENST00000670502.1:ENST00000662400.1:ENST00000663092.1:ENST00000656241.1:ENST00000652879.1:ENST00000668309.1:ENST00000545440.5:ENST00000542112.5:ENST00000541615.5:ENST00000538266.5:ENST00000545688.5:ENST00000540865.5	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	39	314	2	1.10868	1.71753	2.32638	0.0281619	1.36471e-4	0.137261	0.0106702
chr5	126988943	126989043	2714142	0	-	0.37	(0.35,0.378]	chr5	255278	422	INTRON	INTRON	MARCHF3	ENSG00000173926.6	ENST00000308660.6:ENST00000502289.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	55	2	1.6122	1.717505	1.82281	0.0616849	0.0316938	0.174021	0.144635
chr9	112099355	112099451	4316010	0	-	0.375	(0.35,0.378]	chr9	396930	3	INTRON	INTRON	SUSD1	ENSG00000106868.17	ENST00000374270.8:ENST00000374263.7:ENST00000355396.7:ENST00000374264.6:ENST00000529933.5:ENST00000415074.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	64	2	1.4414	1.717455	1.99351	0.0629423	0.020841	0.196658	0.111648
chr15	25406966	25407066	6121511	0	-	0.53	(0.515,0.57]	chr15	582899	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	UBE3A	ENSG00000114062.22	ENST00000648336.2:ENST00000438097.6:ENST00000635914.1:ENST00000638155.1:ENST00000637886.1:ENST00000638011.1:ENST00000649550.1:ENST00000650110.1:ENST00000630424.2:ENST00000566215.5:ENST00000428984.6:ENST00000675177.1:ENST00000675593.1:ENST00000625778.3:ENST00000675000.1:ENST00000626793.2:ENST00000628733.2:ENST00000630907.2:ENST00000675038.1:ENST00000630607.2:ENST00000629886.2:ENST00000628267.2:ENST00000629252.2:ENST00000628890.1:ENST00000625681.2:ENST00000626589.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	56	2	1.58964	1.717375	1.84511	0.0408	0.0167182	0.1451	0.110511
chr11	90211926	90212025	5016427	0	-	0.333333	(0.32,0.35]	chr11	473203	7	EXON_MRNA	EXON_MRNA:INTRON	CHORDC1	ENSG00000110172.12	ENST00000320585.11:ENST00000457199.6:ENST00000533724.5:ENST00000525317.5:ENST00000533772.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	76	2	1.64769	1.717345	1.787	0.0578603	0.0151818	0.167723	0.108535
chr17	31953273	31953373	6595840	0	+	0.5	(0.476,0.515]	chr17	641554	52	INTRON	INTRON	SUZ12	ENSG00000178691.11	ENST00000322652.10:ENST00000580398.1	protein_coding	protein_coding	protein_coding	protein_coding	14	111	2	1.5983	1.71732	1.83634	0.0132605	0.00949158	0.100131	0.0817766
chr22	19954449	19954548	7477531	0	+	0.50505	(0.476,0.515]	chr22	762571	1	INTRON	INTRON	COMT	ENSG00000093010.15	ENST00000676678.1:ENST00000403184.5:ENST00000361682.11:ENST00000403710.5:ENST00000407537.5:ENST00000467943.5:ENST00000678868.1:ENST00000678769.1:ENST00000428707.2:ENST00000412786.5:ENST00000207636.9:ENST00000406520.7:ENST00000678255.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	25	196	2	1.50654	1.71726	1.92798	0.00964206	0.00187961	0.0825607	0.0402444
chr10	22572514	22572612	4579071	0	-	0.520408	(0.515,0.57]	chr10	421992	31	INTRON	INTRON	PIP4K2A	ENSG00000150867.14	ENST00000376573.9:ENST00000323883.11:ENST00000545335.5:ENST00000604912.1:ENST00000422321.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	49	2	1.56838	1.71724	1.8661	0.0424458	0.0274846	0.161763	0.123904
chr6	158563728	158563828	3021635	0	+	0.41	(0.408,0.44]	chr6	281792	31	INTRON	INTRON	TMEM181	ENSG00000146433.10	ENST00000367090.4:ENST00000684151.1	protein_coding	protein_coding	protein_coding	protein_coding	10	82	2	1.50652	1.7172100000000001	1.9279	0.0410276	0.00807087	0.1451	0.0806514
chr2	131292096	131292186	866305	0	+	0.377778	(0.35,0.378]	chr2	97303	4	EXON_LNCRNA	EXON_LNCRNA:INTRON	PLEKHB2:FAR2P4	ENSG00000115762.17:ENSG00000231431.7	ENST00000404460.5:ENST00000560285.5:ENST00000416266.2	protein_coding	protein_coding	protein_coding:transcribed_unprocessed_pseudogene	protein_coding:processed_transcript	6	55	2	1.53008	1.717065	1.90405	0.0530361	0.0482651	0.171852	0.162198
chr6	35880031	35880131	3088406	0	-	0.4	(0.378,0.408]	chr6	288860	53	INTRON	INTRON	SRPK1	ENSG00000096063.16	ENST00000373825.7:ENST00000423325.6:ENST00000346162.10:ENST00000361690.7:ENST00000510290.5:ENST00000373821.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	13	109	2	1.59634	1.71706	1.83778	0.0244222	0.00609624	0.12011	0.0706177
chr22	20952478	20952576	7480870	0	+	0.428571	(0.408,0.44]	chr22	763101	28	UTR3	UTR3:EXON_MRNA:INTRON	CRKL	ENSG00000099942.13	ENST00000354336.8:ENST00000411769.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	51	396	2	1.68102	1.71641	1.7518	0.00224678	0.0011994	0.0424768	0.0318935
chr7	2368305	2368400	3269768	0	+	0.505263	(0.476,0.515]	chr7	303838	9	INTRON	INTRON	EIF3B	ENSG00000106263.19	ENST00000360876.9:ENST00000397011.2:ENST00000466199.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	23	168	2	1.35048	1.716285	2.08209	0.0146754	0.00240759	0.106558	0.0441686
chr1	174161856	174161955	257127	0	+	0.454545	(0.44,0.476]	chr1	30720	18	INTRON	INTRON	RABGAP1L	ENSG00000152061.24	ENST00000357444.10:ENST00000251507.8:ENST00000681986.1:ENST00000635248.1:ENST00000457696.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	64	2	1.40212	1.71623	2.03034	0.0524678	0.0173569	0.178047	0.104189
chr19	1272530	1272618	6994621	0	+	0.545455	(0.515,0.57]	chr19	693002	2	UTR3	UTR3:EXON_MRNA:SS3_PROX:SS5_PROX:INTRON	CIRBP	ENSG00000099622.14	ENST00000588030.5:ENST00000586472.5:ENST00000588090.5:ENST00000591935.5:ENST00000586548.5:ENST00000585913.5:ENST00000589710.5:ENST00000585630.5:ENST00000586773.5:ENST00000587323.5:ENST00000593128.5:ENST00000587896.6:ENST00000593093.5:ENST00000413636.6:ENST00000590704.5:ENST00000591097.5:ENST00000590347.5:ENST00000587169.5:ENST00000593048.5:ENST00000320936.9:ENST00000586636.5:ENST00000591376.5:ENST00000591055.5:ENST00000589235.5:ENST00000585914.5:ENST00000588344.2:ENST00000592234.5:ENST00000444172.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	18	125	2	1.53505	1.716195	1.89734	0.0133526	0.00283939	0.100772	0.0473209
chr21	43103916	43104015	7468307	0	-	0.626263	(0.57,1]	chr21	761118	26	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	U2AF1	ENSG00000160201.12	ENST00000291552.9:ENST00000380276.6:ENST00000464750.5:ENST00000475639.5:ENST00000459639.5:ENST00000486519.5:ENST00000463599.5:ENST00000496462.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	25	2	1.52818	1.71619	1.9042	0.0508101	0.0476976	0.175989	0.153019
chr17	75377590	75377690	6837517	0	-	0.41	(0.408,0.44]	chr17	675716	444	INTRON	INTRON	GRB2	ENSG00000177885.15	ENST00000316615.9:ENST00000316804.10:ENST00000392562.5:ENST00000392564.5:ENST00000392563.5:ENST00000648046.1:ENST00000578961.5:ENST00000582582.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	82	2	1.47066	1.7159900000000001	1.96132	0.0457145	0.00701866	0.149888	0.0754576
chr18	46093365	46093465	6965452	0	-	0.45	(0.44,0.476]	chr18	689407	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	ATP5F1A	ENSG00000152234.16	ENST00000398752.11:ENST00000282050.6:ENST00000593152.6:ENST00000586592.5:ENST00000590665.5:ENST00000590156.5:ENST00000592364.5:ENST00000589252.5:ENST00000589869.5:ENST00000590406.5:ENST00000590324.5:ENST00000590448.5:ENST00000592989.1:ENST00000591981.5:ENST00000585650.1:ENST00000591267.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	14	108	2	1.50109	1.71596	1.93083	0.0163678	0.00932249	0.109593	0.0817766
chr3	196050956	196051055	1897215	0	-	0.313131	(0.28,0.32]	chr3	189885	18	UTR3	UTR3:EXON_MRNA:INTRON	TFRC	ENSG00000072274.13	ENST00000426789.5:ENST00000420415.5:ENST00000360110.9:ENST00000392396.7	protein_coding	protein_coding	protein_coding	protein_coding	42	430	2	1.70141	1.7159300000000002	1.73045	0.00492291	0.00216622	0.0610952	0.0434015
chr1	17436440	17436539	384954	0	-	0.494949	(0.476,0.515]	chr1	45493	69	INTRON	INTRON	RCC2	ENSG00000179051.14	ENST00000375436.9:ENST00000375433.3	protein_coding	protein_coding	protein_coding	protein_coding	11	92	2	1.57103	1.715865	1.8607	0.0307896	0.00860776	0.143385	0.0784337
chr7	105070038	105070137	3375189	0	+	0.313131	(0.28,0.32]	chr7	315906	11	INTRON	INTRON	KMT2E	ENSG00000005483.22	ENST00000622386.2:ENST00000257745.9:ENST00000334884.9:ENST00000311117.8:ENST00000478990.5:ENST00000495267.5:ENST00000476671.5:ENST00000667857.1:ENST00000482560.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	69	2	1.56481	1.7158250000000002	1.86684	0.0605813	0.0339805	0.171122	0.146815
chr18	733955	734053	6939909	0	-	0.479592	(0.476,0.515]	chr18	686461	6	INTRON	INTRON	YES1	ENSG00000176105.14	ENST00000584307.5:ENST00000314574.5:ENST00000577961.5	protein_coding	protein_coding	protein_coding	protein_coding	7	57	2	1.68907	1.715785	1.7425	0.0417334	0.0296007	0.147007	0.142135
chr5	132949999	132950099	2725134	0	-	0.49	(0.476,0.515]	chr5	256349	124	INTRON	INTRON	AFF4	ENSG00000072364.13	ENST00000265343.10:ENST00000378595.7:ENST00000491831.5:ENST00000465484.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	57	2	1.68907	1.715785	1.7425	0.0417334	0.0296007	0.147007	0.142135
chr16	2977626	2977721	6432852	0	-	0.526316	(0.515,0.57]	chr16	619099	2	INTRON	INTRON	PKMYT1	ENSG00000127564.17	ENST00000431515.6:ENST00000440027.6:ENST00000262300.13:ENST00000574385.5:ENST00000574730.5:ENST00000573944.5:ENST00000576268.1:ENST00000574415.5:ENST00000575632.5:ENST00000572059.1:ENST00000572619.1	protein_coding	protein_coding	protein_coding	protein_coding	8	57	2	1.68236	1.71578	1.7492	0.0382504	0.0211981	0.15832	0.113017
chr6	167929540	167929639	3035392	0	+	0.515152	(0.476,0.515]	chr6	282838	41	INTRON	INTRON	AFDN	ENSG00000130396.21	ENST00000683244.1:ENST00000351017.9:ENST00000344191.8:ENST00000392112.5:ENST00000392108.7:ENST00000400822.7:ENST00000447894.6:ENST00000366809.6:ENST00000366806.6:ENST00000511637.5:ENST00000485634.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	57	2	1.63962	1.715745	1.79187	0.0362169	0.0346854	0.148144	0.138959
chr1	155559855	155559954	562867	0	-	0.373737	(0.35,0.378]	chr1	67117	379	INTRON	INTRON	ASH1L	ENSG00000116539.14	ENST00000676814.1:ENST00000392403.8:ENST00000368346.7:ENST00000677213.1:ENST00000678117.1:ENST00000679097.1:ENST00000679333.1:ENST00000679133.1:ENST00000548830.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	63	2	1.40722	1.7157299999999998	2.02424	0.0733776	0.0164934	0.190105	0.110301
chr12	56686917	56687017	5336069	0	-	0.31	(0.28,0.32]	chr12	510197	1	SS3_ADJ	SS3_ADJ:SS3_PROX:SS5_PROX:INTRON	PTGES3	ENSG00000110958.16	ENST00000537473.2:ENST00000614328.4:ENST00000262033.11:ENST00000414274.7:ENST00000436399.6:ENST00000448157.6:ENST00000456859.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	21	214	2	1.70388	1.7157	1.72752	0.0117656	0.00490824	0.0894475	0.0643744
chr8	11803832	11803925	3702532	0	+	0.354839	(0.35,0.378]	chr8	343486	1	SS5_PROX	SS5_PROX:INTRON	FDFT1	ENSG00000079459.13	ENST00000538689.4:ENST00000615631.4:ENST00000618539.4:ENST00000530337.5:ENST00000623368.3:ENST00000446331.6:ENST00000443614.6:ENST00000220584.9:ENST00000525607.5:ENST00000525283.5:ENST00000529464.5:ENST00000525900.5:ENST00000528812.5:ENST00000622850.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	11	93	2	1.70607	1.7156	1.72513	0.0482819	0.00811312	0.153283	0.0810208
chr16	8044623	8044723	6440955	0	-	0.3	(0.28,0.32]	chr16	620351	370	INTRON	INTRON	ENSG00000260289	ENSG00000260289.2	ENST00000670665.1:ENST00000654046.1:ENST00000567103.2	lncRNA	lncRNA	lncRNA	lncRNA	7	74	2	1.4428	1.71543	1.98806	0.0712927	0.0199553	0.185716	0.120668
chr5	33449424	33449520	2335212	0	+	0.354167	(0.35,0.378]	chr5	225424	3	INTRON	INTRON	TARS1	ENSG00000113407.14	ENST00000502553.5:ENST00000514259.5:ENST00000508361.5:ENST00000265112.8:ENST00000455217.6:ENST00000507716.5:ENST00000509731.5:ENST00000505012.5:ENST00000513066.3:ENST00000627006.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	88	2	1.64329	1.7153399999999999	1.78739	0.0384351	0.0104819	0.142316	0.0905779
chr5	154816045	154816142	2527639	0	+	0.525773	(0.515,0.57]	chr5	241713	21	UTR3	UTR3:EXON_MRNA	LARP1	ENSG00000155506.19	ENST00000687700.1:ENST00000336314.9:ENST00000690816.1:ENST00000518297.6:ENST00000685946.1:ENST00000685355.1:ENST00000688232.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	15	102	2	1.51973	1.7153200000000002	1.91091	0.0185053	0.00389995	0.108861	0.0569466
chr1	19208876	19208975	386829	0	-	0.323232	(0.32,0.35]	chr1	46143	67	INTRON	INTRON	UBR4	ENSG00000127481.15	ENST00000375254.8	protein_coding	protein_coding	protein_coding	protein_coding	6	60	2	1.61669	1.715285	1.81388	0.0578816	0.0371014	0.188651	0.139201
chr21	6663052	6663151	7425804	0	-	0.343434	(0.32,0.35]	chr21	757499	31	INTRON	INTRON	ENSG00000280145	ENSG00000280145.3	ENST00000625185.3:ENST00000624846.3:ENST00000623313.1:ENST00000624965.1	lncRNA	lncRNA	lncRNA	lncRNA	9	86	2	1.70947	1.715225	1.72098	0.0328375	0.0192903	0.133816	0.119831
chr12	110398346	110398445	5409145	0	-	0.434343	(0.408,0.44]	chr12	516463	15	INTRON	INTRON	ANAPC7:ENSG00000258210	ENSG00000196510.14:ENSG00000258210.1	ENST00000455511.9:ENST00000450008.3:ENST00000552170.2:ENST00000550231.1:ENST00000464697.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay	15	122	2	1.63198	1.7152150000000002	1.79845	0.0137074	0.0071196	0.0949306	0.0756118
chr1	32333432	32333529	65145	0	+	0.474227	(0.44,0.476]	chr1	8371	5	UTR3	UTR3:EXON_MRNA	HDAC1	ENSG00000116478.12	ENST00000373548.8:ENST00000476391.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	14	108	2	1.42119	1.715205	2.00922	0.0224591	0.0068301	0.124921	0.0713163
chr17	79837902	79838002	6846884	0	-	0.52	(0.515,0.57]	chr17	677650	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	CBX4	ENSG00000141582.15	ENST00000269397.9:ENST00000448310.1:ENST00000494546.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	49	2	1.48539	1.71516	1.94493	0.0553982	0.0204583	0.165463	0.122204
chr11	65428964	65429063	4805832	0	+	0.282828	(0.28,0.32]	chr11	446554	63	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	89	882	2	1.69181	1.714845	1.73788	0.00275148	0.00119919	0.0469265	0.0318896
chr7	158825843	158825943	3689777	0	-	0.43	(0.408,0.44]	chr7	342421	264	INTRON	INTRON	ESYT2	ENSG00000117868.18	ENST00000251527.10:ENST00000275418.13:ENST00000652148.1:ENST00000483958.5:ENST00000497111.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	75	2	1.40374	1.714825	2.02591	0.0721345	0.00531945	0.187433	0.0660391
chr10	35390421	35390521	4425042	0	+	0.29	(0.28,0.32]	chr10	407899	529	INTRON	INTRON	CCNY	ENSG00000108100.18	ENST00000374706.5:ENST00000490012.6:ENST00000493157.6:ENST00000374704.8:ENST00000265375.13:ENST00000339497.7:ENST00000492478.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	82	2	1.63236	1.714785	1.79721	0.0408024	0.0273014	0.1451	0.136494
chr9	107296953	107297053	4183514	0	+	0.52	(0.515,0.57]	chr9	381543	117	INTRON	INTRON	RAD23B	ENSG00000119318.13	ENST00000419616.5:ENST00000358015.8:ENST00000416373.6:ENST00000442587.1	protein_coding	protein_coding	protein_coding	protein_coding	7	40	2	1.2997	1.7147050000000001	2.12971	0.0757903	0.0561321	0.194427	0.18407
chr4	70940123	70940223	1970883	0	+	0.58	(0.57,1]	chr4	197571	372	INTRON	INTRON	MOB1B	ENSG00000173542.9	ENST00000502869.5:ENST00000509041.5:ENST00000309395.7:ENST00000396051.2:ENST00000511449.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	12	48	2	1.62927	1.714525	1.79978	0.0199509	0.0105866	0.109608	0.091206400000000007
chr6	53283892	53283991	3107531	0	-	0.292929	(0.28,0.32]	chr6	291014	58	INTRON	INTRON	ELOVL5	ENSG00000012660.14	ENST00000370918.8:ENST00000542638.5:ENST00000304434.11:ENST00000485336.5:ENST00000465983.5:ENST00000486973.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	103	2	1.27959	1.714505	2.14942	0.0472883	0.0143412	0.16913	0.0966737
chr15	84568310	84568409	6251352	0	-	0.353535	(0.35,0.378]	chr15	596598	45	INTRON	INTRON	UBE2Q2P1	ENSG00000189136.9	ENST00000354771.8:ENST00000339094.5:ENST00000561403.6:ENST00000558251.5:ENST00000559871.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	6	52	2	1.49446	1.7143899999999999	1.93432	0.054297	0.0481438	0.182243	0.153019
chr7	155776050	155776149	3453236	0	+	0.474747	(0.44,0.476]	chr7	322755	10	UTR3	UTR3:EXON_MRNA	RBM33	ENSG00000184863.11	ENST00000401878.8:ENST00000341148.7	protein_coding	protein_coding	protein_coding	protein_coding	13	97	2	1.36535	1.7143800000000002	2.06341	0.0277582	0.00871005	0.137011	0.0788605
chr7	107407308	107407407	3611457	0	-	0.474747	(0.44,0.476]	chr7	336688	342	INTRON	INTRON	COG5	ENSG00000164597.15	ENST00000297135.9:ENST00000347053.8:ENST00000393603.7:ENST00000484237.5:ENST00000475638.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	82	2	1.34221	1.7141250000000001	2.08604	0.0656882	0.00407817	0.181162	0.0580928
chr3	100711068	100711168	1467950	0	+	0.46	(0.44,0.476]	chr3	153839	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	TFG	ENSG00000114354.15	ENST00000675047.1:ENST00000490574.6:ENST00000675543.1:ENST00000676308.1:ENST00000675499.1:ENST00000674699.1:ENST00000418917.7:ENST00000675553.1:ENST00000620299.5:ENST00000675246.1:ENST00000675692.1:ENST00000676276.1:ENST00000676054.1:ENST00000675890.1:ENST00000675011.1:ENST00000675586.1:ENST00000674645.1:ENST00000675958.1:ENST00000674798.1:ENST00000676010.1:ENST00000675591.1:ENST00000479672.6:ENST00000675420.1:ENST00000674615.1:ENST00000676431.1:ENST00000674758.1:ENST00000240851.9:ENST00000675243.1:ENST00000676111.1:ENST00000476228.5:ENST00000463568.6:ENST00000676395.1:ENST00000487505.6:ENST00000615993.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	89	2	1.53117	1.71403	1.89689	0.0377545	0.00630125	0.140863	0.0722266
chr15	83037327	83037427	6249138	0	-	0.29	(0.28,0.32]	chr15	596398	66	INTRON	INTRON	BTBD1	ENSG00000064726.10	ENST00000261721.9:ENST00000379403.2:ENST00000559652.5:ENST00000560015.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	61	2	1.56118	1.71401	1.86684	0.0605813	0.0467152	0.171122	0.1676
chr19	11112977	11113077	7017064	0	+	0.44	(0.408,0.44]	chr19	697465	3	SS3_PROX	SS3_PROX:INTRON	LDLR	ENSG00000130164.14	ENST00000557933.5:ENST00000558518.6:ENST00000545707.5:ENST00000535915.5:ENST00000455727.6:ENST00000558013.5:ENST00000252444.9:ENST00000560467.1:ENST00000560173.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	12	101	2	1.20916	1.71395	2.21874	0.0631681	0.00286408	0.197212	0.0474836
chr11	65505127	65505226	4806195	0	+	0.515152	(0.476,0.515]	chr11	446569	76	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	MALAT1	ENSG00000251562.9	ENST00000619449.2:ENST00000534336.1:ENST00000610851.1:ENST00000618227.1:ENST00000617489.1:ENST00000616691.1	lncRNA	lncRNA	lncRNA	lncRNA	4367	33180	2	1.63453	1.71394	1.79335	4.06497e-4	3.01116e-4	0.0181306	0.0160895
chr1	50911983	50912083	451773	0	-	0.46	(0.44,0.476]	chr1	54267	536	INTRON	INTRON	FAF1	ENSG00000185104.21	ENST00000396153.7:ENST00000487898.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	50	2	1.49942	1.713895	1.92837	0.0792118	0.0222222	0.199574	0.124303
chr1	71064478	71064577	482852	0	-	0.333333	(0.32,0.35]	chr1	57837	13	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ZRANB2	ENSG00000132485.14	ENST00000370920.8:ENST00000477096.1:ENST00000254821.10	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	24	196	2	1.0494	1.7138650000000002	2.37833	0.0479626	0.0012015	0.171045	0.03161
chr7	100348332	100348430	3364462	0	+	0.469388	(0.44,0.476]	chr7	314647	20	INTRON	INTRON	STAG3L5P:STAG3L5P-PVRIG2P-PILRB	ENSG00000242294.6:ENSG00000272752.6	ENST00000473757.5:ENST00000470714.5:ENST00000310771.8:ENST00000483329.6:ENST00000444874.5:ENST00000488972.6:ENST00000493499.1	lncRNA	retained_intron	lncRNA:transcribed_unprocessed_pseudogene	retained_intron:lncRNA:processed_transcript	7	60	2	1.62896	1.713845	1.79873	0.0546679	0.0223888	0.182674	0.116918
chr3	152452262	152452361	1536834	0	+	0.363636	(0.35,0.378]	chr3	160043	30	INTRON	INTRON	MBNL1	ENSG00000152601.18	ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000324210.10:ENST00000493459.5:ENST00000545754.5:ENST00000357472.7:ENST00000324196.9:ENST00000498502.5:ENST00000463374.5:ENST00000485910.5:ENST00000465907.6:ENST00000492948.5:ENST00000485509.5:ENST00000464596.5:ENST00000478535.1:ENST00000460166.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	55	2	1.6599	1.7138149999999999	1.76773	0.0545616	0.0373863	0.165292	0.155878
chr7	119745615	119745715	3628794	0	-	0.37	(0.35,0.378]	chr7	337319	403	INTRON	INTRON	LINC02476	ENSG00000225546.6	ENST00000660268.1:ENST00000431071.5	lncRNA	lncRNA	lncRNA	lncRNA	6	55	2	1.6599	1.7138149999999999	1.76773	0.0545616	0.0373863	0.165292	0.155878
chr21	10431572	10431672	7368310	0	+	0.55	(0.515,0.57]	chr21	751975	163	INTRON	INTRON	BAGE2	ENSG00000187172.15	ENST00000474011.5:ENST00000470054.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	16	108	2	1.67702	1.713805	1.75059	0.0122403	0.00499963	0.0910127	0.0646039
chr16	58626670	58626768	6496354	0	-	0.530612	(0.515,0.57]	chr16	628651	15	INTRON	INTRON	CNOT1	ENSG00000125107.19	ENST00000317147.10:ENST00000569240.5:ENST00000567188.5:ENST00000441024.6:ENST00000565605.5:ENST00000564557.1:ENST00000569916.1:ENST00000569020.5:ENST00000568158.1:ENST00000569263.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	56	2	1.68687	1.7137850000000001	1.7407	0.0300837	0.0242347	0.130613	0.129186
chr1	241850786	241850886	344396	0	+	0.31	(0.28,0.32]	chr1	40090	2	SS5_PROX	SS5_PROX:INTRON	EXO1	ENSG00000174371.17	ENST00000366548.8:ENST00000423131.5:ENST00000523590.5:ENST00000348581.9:ENST00000518483.5:ENST00000437497.5:ENST00000450748.1:ENST00000493702.5:ENST00000469419.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	21	214	2	1.25635	1.713775	2.1712	0.0418184	9.36611e-4	0.147167	0.0279527
chr6	20401878	20401966	2827445	0	+	0.647727	(0.57,1]	chr6	265565	1	UTR5	UTR5:EXON_MRNA	E2F3	ENSG00000112242.16	ENST00000346618.8	protein_coding	protein_coding	protein_coding	protein_coding	15	68	2	1.34554	1.7137600000000002	2.08198	0.0508971	6.91017e-4	0.176247	0.0241055
chr1	150554634	150554734	223203	0	+	0.65	(0.57,1]	chr1	25278	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ADAMTSL4	ENSG00000143382.16	ENST00000369039.9:ENST00000271643.9:ENST00000369041.9:ENST00000674043.1:ENST00000674058.1:ENST00000369038.6	protein_coding	protein_coding	protein_coding	protein_coding	10	41	2	1.42137	1.7135150000000001	2.00566	0.0395751	0.00889324	0.161534	0.0798039
chr20	47251532	47251631	7348448	0	-	0.40404	(0.378,0.408]	chr20	749282	17	INTRON	INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000467200.6:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000468376.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	19	156	2	1.62557	1.713505	1.80144	0.00720085	0.00713896	0.0756118	0.0727625
chr17	44501329	44501428	6780820	0	-	0.535354	(0.515,0.57]	chr17	668697	261	INTRON	INTRON	GPATCH8	ENSG00000186566.13	ENST00000591680.6:ENST00000587228.5:ENST00000585614.1:ENST00000590041.5:ENST00000592746.5:ENST00000586037.5:ENST00000592154.1:ENST00000588554.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	36	2	1.56681	1.7134399999999999	1.86007	0.064862	0.0526611	0.179394	0.178401
chr9	34202154	34202254	4111501	0	+	0.54	(0.515,0.57]	chr9	374720	104	INTRON	INTRON	UBAP1	ENSG00000165006.14	ENST00000625521.2:ENST00000379186.8:ENST00000297661.9:ENST00000626262.2	protein_coding	protein_coding	protein_coding	protein_coding	5	36	2	1.56681	1.7134399999999999	1.86007	0.064862	0.0526611	0.179394	0.178401
chr1	23029968	23030068	43863	0	+	0.36	(0.35,0.378]	chr1	5253	1	SS3_PROX	SS3_PROX:INTRON	KDM1A	ENSG00000004487.18	ENST00000692214.1:ENST00000686934.1:ENST00000689853.1:ENST00000465864.2:ENST00000691256.1:ENST00000688122.1:ENST00000692056.1:ENST00000692853.1:ENST00000689366.1:ENST00000686270.1:ENST00000685102.1:ENST00000690627.1:ENST00000686771.1:ENST00000692209.1:ENST00000686339.1:ENST00000691813.1:ENST00000693156.1:ENST00000688235.1:ENST00000692975.1:ENST00000687202.1:ENST00000691682.1:ENST00000691404.1:ENST00000691694.1:ENST00000688680.1:ENST00000356634.7:ENST00000400181.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	81	2	1.44934	1.7133150000000001	1.97729	0.0658369	0.00688871	0.181518	0.0750118
chr1	162592431	162592531	238634	0	+	0.45	(0.44,0.476]	chr1	28741	3	SS3_PROX	SS3_PROX:INTRON	UAP1	ENSG00000117143.14	ENST00000367925.6:ENST00000367926.9	protein_coding	protein_coding	protein_coding	protein_coding	8	66	2	1.70242	1.7133150000000001	1.72421	0.0285163	0.0282713	0.137721	0.12666
chr3	143034456	143034526	1529429	0	+	0.371429	(0.35,0.378]	chr3	159423	2	SS3_PROX	SS3_PROX:INTRON	U2SURP	ENSG00000163714.18	ENST00000488497.7:ENST00000473835.7:ENST00000493598.6:ENST00000463563.6:ENST00000480029.5:ENST00000472373.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	80	2	1.64329	1.7133099999999999	1.78333	0.0384351	0.0148511	0.142316	0.106937
chr8	108243008	108243102	4023220	0	-	0.351064	(0.35,0.378]	chr8	367688	8	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	EIF3E	ENSG00000104408.11	ENST00000678042.1:ENST00000678773.1:ENST00000677409.1:ENST00000676892.1:ENST00000523674.2:ENST00000677674.1:ENST00000220849.10:ENST00000678937.1:ENST00000677084.1:ENST00000676706.1:ENST00000518100.6:ENST00000677040.1:ENST00000676698.1:ENST00000522352.6:ENST00000521297.2:ENST00000677501.1:ENST00000519030.6:ENST00000519627.2:ENST00000518345.2:ENST00000522445.6:ENST00000678334.1:ENST00000678023.1:ENST00000678797.1:ENST00000677614.1:ENST00000676642.1:ENST00000677965.1:ENST00000678901.1:ENST00000678243.1:ENST00000676663.1:ENST00000679198.1:ENST00000521614.6:ENST00000678004.1:ENST00000678881.1:ENST00000677590.1:ENST00000677272.1:ENST00000676530.1:ENST00000677746.1:ENST00000677447.1:ENST00000676548.1:ENST00000676487.1:ENST00000521440.6:ENST00000518442.5:ENST00000522887.1:ENST00000518634.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	80	2	1.71241	1.71326	1.71411	0.0310697	0.019274	0.13151	0.119831
chr1	246150674	246150773	677139	0	-	0.535354	(0.515,0.57]	chr1	79721	544	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000391836.3:ENST00000453676.5:ENST00000462422.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	15	101	2	1.48662	1.71325	1.93988	0.0177755	0.00481033	0.105721	0.0638089
chr17	58004718	58004818	6800024	0	-	0.3	(0.28,0.32]	chr17	671424	39	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	ENSG00000266086:SRSF1	ENSG00000266086.3:ENSG00000136450.13	ENST00000578794.2:ENST00000665125.1:ENST00000258962.5:ENST00000582730.6:ENST00000581497.1:ENST00000584668.5:ENST00000581979.5:ENST00000584773.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	39	396	2	1.44304	1.713235	1.98343	0.013399	7.92304e-4	0.0946278	0.0258759
chr11	57787537	57787637	4793389	0	+	0.42	(0.408,0.44]	chr11	443721	55	INTRON	INTRON	ENSG00000288534:CTNND1	ENSG00000288534.1:ENSG00000198561.16	ENST00000673781.1:ENST00000673810.1:ENST00000674116.1:ENST00000674060.1:ENST00000524630.5:ENST00000529919.5:ENST00000533189.1:ENST00000682741.1:ENST00000358694.10:ENST00000361332.8:ENST00000361391.10:ENST00000361796.9:ENST00000415361.6:ENST00000426142.6:ENST00000428599.6:ENST00000525902.5:ENST00000526357.5:ENST00000526772.5:ENST00000527467.5:ENST00000528232.5:ENST00000528621.5:ENST00000529526.5:ENST00000529873.5:ENST00000529986.5:ENST00000530094.5:ENST00000530748.5:ENST00000531014.5:ENST00000532245.5:ENST00000532463.5:ENST00000532649.5:ENST00000532787.5:ENST00000532844.5:ENST00000533667.5:ENST00000534579.5:ENST00000399050.10:ENST00000526938.5:ENST00000531007.2:ENST00000674015.1:ENST00000673826.1:ENST00000673683.1:ENST00000674106.1:ENST00000530068.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	14	114	2	1.35901	1.713205	2.0674	0.0428833	0.00200311	0.148082	0.0413037
chr22	21798911	21799011	7560696	0	-	0.41	(0.408,0.44]	chr22	773372	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	13	103	2	1.30866	1.7131699999999999	2.11768	0.0434157	0.00352982	0.14821	0.0546236
chr11	65498679	65498778	4806130	0	+	0.424242	(0.408,0.44]	chr11	446569	11	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MALAT1	ENSG00000251562.9	ENST00000619449.2:ENST00000534336.1:ENST00000688218.1:ENST00000689729.1:ENST00000693503.1:ENST00000692086.1:ENST00000685846.1:ENST00000690116.1	lncRNA	lncRNA	lncRNA	lncRNA	8	66	2	1.53263	1.713165	1.8937	0.0733439	0.00928733	0.190051	0.0855292
chr1	1752312	1752411	361453	0	-	0.616162	(0.57,1]	chr1	42148	12	UTR3	UTR3:EXON_MRNA	NADK	ENSG00000008130.15	ENST00000378625.5:ENST00000341991.7:ENST00000341426.9	protein_coding	protein_coding	protein_coding	protein_coding	7	29	2	1.50683	1.7130999999999998	1.91937	0.0468438	0.0378927	0.167716	0.141283
chr7	119790538	119790638	3629245	0	-	0.43	(0.408,0.44]	chr7	337329	78	INTRON	INTRON	LINC02476	ENSG00000225546.6	ENST00000660268.1:ENST00000431071.5:ENST00000426413.2	lncRNA	lncRNA	lncRNA	lncRNA	14	113	2	1.50203	1.71308	1.92413	0.0193894	0.00687924	0.119831	0.0717484
chr1	205747963	205748063	623868	0	-	0.29	(0.28,0.32]	chr1	74198	168	INTRON	INTRON	NUCKS1	ENSG00000069275.13	ENST00000367142.5	protein_coding	protein_coding	protein_coding	protein_coding	5	53	2	1.61031	1.7130649999999998	1.81582	0.068122	0.0600513	0.190658	0.184298
chr6	87221583	87221681	2913925	0	+	0.285714	(0.28,0.32]	chr6	275307	25	INTRON	INTRON	ZNF292	ENSG00000188994.13	ENST00000369577.8:ENST00000369578.6:ENST00000518845.1:ENST00000339907.8:ENST00000496806.2:ENST00000524067.5:ENST00000485016.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	53	2	1.61031	1.7130649999999998	1.81582	0.068122	0.0600513	0.190658	0.184298
chr11	86064855	86064955	5014801	0	-	0.49	(0.476,0.515]	chr11	473022	329	INTRON	INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000630913.2:ENST00000528398.5:ENST00000356360.9:ENST00000534412.5:ENST00000531558.1:ENST00000531930.5:ENST00000532041.5:ENST00000525162.5:ENST00000528256.1:ENST00000528411.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	37	277	2	1.44069	1.712955	1.98522	0.00610496	0.00116537	0.0706941	0.0312127
chr15	66607621	66607721	6051037	0	+	0.44	(0.408,0.44]	chr15	576221	250	INTRON	INTRON	LINC01169	ENSG00000259471.1	ENST00000558797.1	lncRNA	lncRNA	lncRNA	lncRNA	13	105	2	1.68203	1.71285	1.74367	0.0175685	0.00902611	0.105143	0.0851577
chr4	68338684	68338784	2154774	0	-	0.47	(0.44,0.476]	chr4	212283	3	SS3_PROX	SS3_PROX:INTRON	YTHDC1	ENSG00000083896.13	ENST00000344157.9:ENST00000355665.7:ENST00000579690.5:ENST00000510746.1	protein_coding	protein_coding	protein_coding	protein_coding	8	66	2	1.49942	1.712815	1.92621	0.0792118	0.00813281	0.199574	0.0810802
chr15	34379848	34379945	6132657	0	-	0.371134	(0.35,0.378]	chr15	584178	9	UTR3	UTR3:EXON_MRNA	GOLGA8A	ENSG00000175265.18	ENST00000359187.5:ENST00000473125.5:ENST00000432566.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	16	123	2	1.26861	1.7127850000000002	2.15696	0.0294789	0.00672191	0.142135	0.070858
chr1	23056230	23056327	44135	0	+	0.350515	(0.35,0.378]	chr1	5285	3	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	KDM1A	ENSG00000004487.18	ENST00000692214.1:ENST00000686934.1:ENST00000689853.1:ENST00000465864.2:ENST00000691256.1:ENST00000688122.1:ENST00000692056.1:ENST00000692853.1:ENST00000689366.1:ENST00000686270.1:ENST00000685102.1:ENST00000690627.1:ENST00000686771.1:ENST00000692209.1:ENST00000686339.1:ENST00000691813.1:ENST00000693156.1:ENST00000688235.1:ENST00000692975.1:ENST00000687202.1:ENST00000691682.1:ENST00000691404.1:ENST00000691694.1:ENST00000688680.1:ENST00000356634.7:ENST00000400181.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	112	2	1.67836	1.71252	1.74668	0.0198631	0.0099105	0.109608	0.0877296
chr17	76266566	76266664	6677148	0	+	0.520408	(0.515,0.57]	chr17	652074	2	INTRON	INTRON	UBALD2	ENSG00000185262.9	ENST00000327490.8:ENST00000587913.1:ENST00000589240.1	protein_coding	protein_coding	protein_coding	protein_coding	10	69	2	1.60369	1.71241	1.82113	0.027865	0.0118311	0.124158	0.0962115
chr4	39707174	39707274	1953082	0	+	0.5	(0.476,0.515]	chr4	195630	84	INTRON	INTRON	UBE2K	ENSG00000078140.14	ENST00000510934.5:ENST00000261427.10:ENST00000438068.6:ENST00000513231.5:ENST00000503368.5:ENST00000445950.2:ENST00000510719.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	22	171	2	1.24982	1.71238	2.17494	0.0316543	6.19997e-4	0.13151	0.0223951
chr17	46170105	46170190	6784641	0	-	0.435294	(0.408,0.44]	chr17	669238	1	INTRON	INTRON	KANSL1	ENSG00000120071.15	ENST00000574590.6:ENST00000572904.6:ENST00000432791.7:ENST00000575318.6:ENST00000638275.1:ENST00000262419.10:ENST00000648792.1:ENST00000639531.1:ENST00000639150.1:ENST00000639853.1:ENST00000571698.2:ENST00000639375.1:ENST00000638269.1:ENST00000576248.2:ENST00000639356.1:ENST00000574655.6:ENST00000639099.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	66	2	1.53812	1.71231	1.8865	0.0501609	0.0148842	0.156383	0.107116
chr16	21434450	21434550	6460659	0	-	0.45	(0.44,0.476]	chr16	623222	30	INTRON	INTRON	NPIPB3	ENSG00000169246.16	ENST00000521589.5:ENST00000545358.5:ENST00000543368.1:ENST00000544154.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	13	107	2	1.4317	1.7122899999999999	1.99288	0.0304668	0.00506305	0.143385	0.0621733
chr17	41691511	41691607	6610721	0	+	0.364583	(0.35,0.378]	chr17	643905	7	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	EIF1	ENSG00000173812.11	ENST00000469257.2:ENST00000462917.1:ENST00000482111.1:ENST00000310837.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	24	182	2	1.19499	1.71219	2.22939	0.0263814	0.00207197	0.133676	0.0411801
chr6	143442671	143442770	3242289	0	-	0.232323	[0,0.28]	chr6	301155	8	INTRON	INTRON	ADAT2	ENSG00000189007.16	ENST00000237283.9	protein_coding	protein_coding	protein_coding	protein_coding	10	111	2	1.24293	1.71218	2.18143	0.0642521	0.0149482	0.19963	0.0994282
chr14	21239557	21239657	5834867	0	-	0.48	(0.476,0.515]	chr14	554459	27	INTRON	INTRON	HNRNPC	ENSG00000092199.19	ENST00000336053.10:ENST00000553300.6:ENST00000554969.5:ENST00000556142.5:ENST00000554455.5:ENST00000430246.6:ENST00000553753.5:ENST00000555309.5:ENST00000555914.5:ENST00000557442.5:ENST00000556628.5:ENST00000556513.5:ENST00000555883.5:ENST00000557201.5:ENST00000556897.5:ENST00000420743.6:ENST00000554539.5:ENST00000554383.5:ENST00000555215.5:ENST00000555137.5:ENST00000554891.5:ENST00000556226.5:ENST00000555176.5:ENST00000553614.5:ENST00000557336.1:ENST00000557768.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	64	2	1.69138	1.71216	1.73294	0.0481165	0.0174121	0.153019	0.112632
chr20	62167804	62167903	7297735	0	+	0.474747	(0.44,0.476]	chr20	742294	19	INTRON	INTRON	SS18L1	ENSG00000184402.15	ENST00000331758.8:ENST00000370848.8:ENST00000492466.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	64	2	1.34221	1.71216	2.08211	0.0656882	0.0130715	0.181162	0.0996047
chr17	30741149	30741246	6589898	0	+	0.329897	(0.32,0.35]	chr17	640854	10	INTRON	INTRON	SUZ12P1	ENSG00000264538.7	ENST00000578070.5:ENST00000579526.5:ENST00000690405.1:ENST00000497969.6:ENST00000578195.6:ENST00000582557.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	11	101	2	1.56183	1.712035	1.86224	0.0203914	0.0202633	0.121406	0.11076
chr22	16615303	16615399	7473495	0	+	0.572917	(0.57,1]	chr22	761980	3	INTRON	INTRON	TPTEP1	ENSG00000100181.22	ENST00000558085.6:ENST00000400593.6:ENST00000426585.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	8	34	2	1.62421	1.711995	1.79978	0.0376752	0.0199509	0.156361	0.109608
chr8	100719663	100719754	4005569	0	-	0.32967	(0.32,0.35]	chr8	366627	1	INTRON	INTRON	PABPC1	ENSG00000070756.17	ENST00000677140.1:ENST00000677787.1:ENST00000678709.1:ENST00000676662.1:ENST00000677765.1:ENST00000522720.2:ENST00000520804.2:ENST00000521865.6:ENST00000677478.1:ENST00000677380.1:ENST00000520142.2:ENST00000677775.1:ENST00000678954.1:ENST00000318607.10:ENST00000679197.1:ENST00000519100.6:ENST00000519004.5:ENST00000522387.5:ENST00000522658.6:ENST00000678822.1:ENST00000523555.6:ENST00000610907.2:ENST00000517921.2:ENST00000518196.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	104	2	1.46989	1.7119849999999999	1.95408	0.0331434	0.0124054	0.133994	0.0973643
chr16	58577826	58577919	6495847	0	-	0.322581	(0.32,0.35]	chr16	628576	9	INTRON	INTRON	CNOT1	ENSG00000125107.19	ENST00000317147.10:ENST00000569240.5:ENST00000567188.5:ENST00000441024.6:ENST00000565605.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	101	2	1.39196	1.71197	2.03198	0.0269614	0.0193728	0.135436	0.108916
chr17	63761694	63761772	6811860	0	-	0.410256	(0.408,0.44]	chr17	673175	3	SS3_PROX	SS3_PROX:INTRON	CCDC47	ENSG00000108588.15	ENST00000225726.10:ENST00000403162.7:ENST00000582252.1	protein_coding	protein_coding	protein_coding	protein_coding	7	55	2	1.27662	1.71197	2.14732	0.0787183	0.0237354	0.198567	0.129075
chr7	148842681	148842780	3670344	0	-	0.252525	[0,0.28]	chr7	340616	53	INTRON	INTRON	EZH2	ENSG00000106462.12	ENST00000683292.1:ENST00000320356.7:ENST00000492143.5:ENST00000478654.5:ENST00000350995.6:ENST00000460911.5:ENST00000683744.1:ENST00000682317.1:ENST00000682263.1:ENST00000684300.1:ENST00000476773.5:ENST00000483967.5:ENST00000498186.5:ENST00000483012.1:ENST00000682401.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	97	2	1.46548	1.7119149999999999	1.95835	0.0721311	0.014237	0.187433	0.103751
chr11	70421677	70421774	4821861	0	+	0.474227	(0.44,0.476]	chr11	449646	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	CTTN	ENSG00000085733.16	ENST00000346329.7:ENST00000301843.13:ENST00000376561.7:ENST00000527962.5:ENST00000483662.2:ENST00000498223.3:ENST00000525852.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	65	2	1.49531	1.71184	1.92837	0.0421587	0.0222222	0.148082	0.124303
chr7	5705564	5705664	3474191	0	-	0.51	(0.476,0.515]	chr7	324821	527	INTRON	INTRON	RNF216	ENSG00000011275.19	ENST00000425013.6:ENST00000389902.8:ENST00000389900.8:ENST00000484458.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	50	2	1.68092	1.71171	1.7425	0.0474026	0.0417334	0.169265	0.147007
chr8	47824396	47824496	3944329	0	-	0.45	(0.44,0.476]	chr8	361634	4	SS3_PROX	SS3_PROX:INTRON	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7	protein_coding	protein_coding	protein_coding	protein_coding	10	76	2	1.20235	1.71169	2.22103	0.068424	0.00776319	0.184298	0.0787356
chr16	28153127	28153209	6467866	0	-	0.426829	(0.408,0.44]	chr16	624541	3	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	XPO6	ENSG00000169180.12	ENST00000304658.10:ENST00000565698.5:ENST00000564337.5:ENST00000570294.5:ENST00000566175.1:ENST00000574435.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	59	2	1.42102	1.71165	2.00228	0.0389732	0.0389354	0.160836	0.143072
chr15	27156678	27156778	5984010	0	+	0.35	(0.32,0.35]	chr15	569164	1295	INTRON	INTRON	GABRG3	ENSG00000182256.13	ENST00000615808.5:ENST00000555083.5	protein_coding	protein_coding	protein_coding	protein_coding	8	78	2	1.68188	1.711615	1.74135	0.031521	0.0298264	0.144381	0.129138
chr1	204557226	204557325	297841	0	+	0.414141	(0.408,0.44]	chr1	34331	77	UTR3	UTR3:EXON_MRNA	MDM4	ENSG00000198625.14	ENST00000367183.7:ENST00000391947.6:ENST00000454264.6:ENST00000612738.4:ENST00000614459.4:ENST00000616250.4:ENST00000367182.8	protein_coding	protein_coding	protein_coding	protein_coding	15	119	2	1.68203	1.7115749999999998	1.74112	0.0175685	0.00575332	0.105143	0.0682011
chr3	197860934	197861034	1598435	0	+	0.4	(0.378,0.408]	chr3	165649	16	INTRON	INTRON	LRCH3	ENSG00000186001.14	ENST00000438796.6:ENST00000428136.2:ENST00000425562.7:ENST00000441090.6:ENST00000414675.6:ENST00000334859.8:ENST00000461674.5:ENST00000452660.5:ENST00000433298.5:ENST00000481048.5:ENST00000471667.5:ENST00000483442.5:ENST00000473177.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	52	2	1.53052	1.711515	1.89251	0.0744544	0.0251428	0.192012	0.133404
chr10	128118370	128118466	4715622	0	-	0.395833	(0.378,0.408]	chr10	435166	15	INTRON	INTRON	MKI67	ENSG00000148773.14	ENST00000368654.8:ENST00000368653.7:ENST00000478293.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	95	2	1.29877	1.7115049999999998	2.12424	0.0751206	0.00224944	0.19367	0.0435778
chr6	53339041	53339141	3108091	0	-	0.42	(0.408,0.44]	chr6	291051	18	INTRON	INTRON	ELOVL5	ENSG00000012660.14	ENST00000370918.8:ENST00000542638.5:ENST00000304434.11:ENST00000485336.5:ENST00000465983.5:ENST00000486973.1:ENST00000370913.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	70	2	1.49971	1.7114500000000001	1.92319	0.0298505	0.0247322	0.142135	0.12011
chr10	124789714	124789772	4712527	0	-	0.448276	(0.44,0.476]	chr10	434823	2	INTRON	INTRON	EEF1AKMT2	ENSG00000203791.15	ENST00000652548.1:ENST00000466270.5:ENST00000368836.7:ENST00000464099.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	16	124	2	1.61418	1.7114099999999999	1.80864	0.0107599	0.00858071	0.0867043	0.083729
chr2	167908664	167908764	1258889	0	-	0.45	(0.44,0.476]	chr2	133340	75	INTRON	INTRON	B3GALT1-AS1	ENSG00000235335.3	ENST00000430546.2:ENST00000657553.1:ENST00000670221.1:ENST00000436982.2	lncRNA	lncRNA	lncRNA	lncRNA	22	173	2	1.49776	1.711335	1.92491	0.0111045	0.00301776	0.0876025	0.0507519
chr3	120598036	120598135	1486099	0	+	0.444444	(0.44,0.476]	chr3	155229	10	INTRON	INTRON	NDUFB4	ENSG00000065518.8	ENST00000485064.1:ENST00000184266.3:ENST00000492739.1:ENST00000461682.1:ENST00000491335.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	73	2	1.30125	1.711305	2.12136	0.0734119	0.00591413	0.190171	0.0694038
chr5	54101625	54101725	2618823	0	-	0.37	(0.35,0.378]	chr5	248841	257	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	81	2	1.60301	1.71128	1.81955	0.0318236	0.0194679	0.13151	0.11986
chr6	31533402	31533501	3078750	0	-	0.383838	(0.378,0.408]	chr6	286739	6	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	DDX39B	ENSG00000198563.14	ENST00000458640.5:ENST00000462256.5:ENST00000376177.6:ENST00000484566.5:ENST00000396172.6:ENST00000417023.5:ENST00000482195.5:ENST00000431908.5:ENST00000481456.1:ENST00000427214.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	83	677	2	1.56318	1.711275	1.85937	0.00338603	2.94176e-4	0.0517761	0.0153369
chr2	55419351	55419441	1124396	0	-	0.577778	(0.57,1]	chr2	120590	4	UTR5	UTR5:EXON_MRNA	CCDC88A	ENSG00000115355.18	ENST00000263630.13:ENST00000436346.7:ENST00000336838.10:ENST00000642200.1:ENST00000413716.7:ENST00000647401.1:ENST00000645311.1:ENST00000645571.1:ENST00000645477.1:ENST00000645072.1:ENST00000644890.1:ENST00000644630.1:ENST00000647098.1:ENST00000647517.1:ENST00000645031.1:ENST00000645529.1:ENST00000644033.1:ENST00000644193.1:ENST00000647341.1:ENST00000644127.1:ENST00000644157.1:ENST00000471947.2:ENST00000642784.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	26	106	2	1.5198	1.711155	1.90251	0.00713726	7.90511e-4	0.0756118	0.0259663
chr11	47729272	47729372	4951016	0	-	0.35	(0.32,0.35]	chr11	464383	24	INTRON	INTRON	FNBP4	ENSG00000109920.13	ENST00000263773.10:ENST00000525792.5:ENST00000531394.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	88	2	1.32435	1.7111399999999999	2.09793	0.0459022	0.0156788	0.164984	0.101453
chr12	56671056	56671152	5335904	0	-	0.510417	(0.476,0.515]	chr12	510175	3	INTRON	INTRON	PTGES3	ENSG00000110958.16	ENST00000537473.2:ENST00000614328.4:ENST00000262033.11:ENST00000414274.7:ENST00000436399.6:ENST00000448157.6:ENST00000456859.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	87	2	1.46755	1.71112	1.95469	0.0294104	0.0115753	0.128055	0.0962115
chr17	30745159	30745259	6589939	0	+	0.32	(0.28,0.32]	chr17	640860	14	INTRON	INTRON	SUZ12P1	ENSG00000264538.7	ENST00000578070.5:ENST00000579526.5:ENST00000690405.1:ENST00000497969.6:ENST00000578195.6:ENST00000582557.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	13	125	2	1.26769	1.711015	2.15434	0.043453	0.00818138	0.162255	0.0768236
chr7	152296271	152296371	3679885	0	-	0.49	(0.476,0.515]	chr7	341623	95	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000684262.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	70	2	1.62997	1.71092	1.79187	0.0362169	0.018725	0.138959	0.117523
chr15	75363916	75363998	6223162	0	-	0.585366	(0.57,1]	chr15	594358	3	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	MAN2C1	ENSG00000140400.18	ENST00000267978.10:ENST00000563622.5:ENST00000565683.5:ENST00000569482.5:ENST00000563441.5:ENST00000566634.5:ENST00000421803.6:ENST00000570257.6:ENST00000565784.5:ENST00000563539.5:ENST00000565699.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	26	2	1.67986	1.710855	1.74185	0.0496395	0.0401765	0.174685	0.143911
chr11	70435313	70435389	4822005	0	+	0.263158	[0,0.28]	chr11	449684	3	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CTTN	ENSG00000085733.16	ENST00000346329.7:ENST00000301843.13:ENST00000376561.7:ENST00000393747.3:ENST00000529736.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	94	2	1.62448	1.710575	1.79667	0.0445299	0.0302032	0.149888	0.142761
chr6	85632581	85632680	3151343	0	-	0.40404	(0.378,0.408]	chr6	293889	81	INTRON	INTRON	ENSG00000271793:SYNCRIP	ENSG00000271793.2:ENSG00000135316.19	ENST00000682083.1:ENST00000683074.1:ENST00000681965.1:ENST00000682504.1:ENST00000682106.1:ENST00000683364.1:ENST00000683436.1:ENST00000684220.1:ENST00000683909.1:ENST00000684462.1:ENST00000616122.5:ENST00000678528.1:ENST00000676637.1:ENST00000677771.1:ENST00000355238.11:ENST00000678878.1:ENST00000677481.1:ENST00000677646.1:ENST00000676630.1:ENST00000678618.1:ENST00000676542.1:ENST00000677059.1:ENST00000444272.2:ENST00000678899.1:ENST00000369622.8:ENST00000678355.1:ENST00000676688.1:ENST00000677514.1:ENST00000678816.1:ENST00000678930.1:ENST00000678589.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	14	114	2	1.23968	1.7105599999999999	2.18144	0.043845	0.0035488	0.162255	0.0529478
chr12	113685633	113685733	5419873	0	-	0.62	(0.57,1]	chr12	517933	55	INTRON	INTRON	LINC01234	ENSG00000249550.8	ENST00000661760.1:ENST00000550905.5	lncRNA	lncRNA	lncRNA	lncRNA	16	65	2	1.65222	1.71054	1.76886	0.0093192	0.0054426	0.0817766	0.0668631
chr11	57498963	57499052	4953630	0	-	0.561798	(0.515,0.57]	chr11	465036	8	INTRON	INTRON	SLC43A1	ENSG00000149150.9	ENST00000278426.8:ENST00000528450.5:ENST00000525764.5:ENST00000533515.5:ENST00000530159.5:ENST00000533066.5:ENST00000524995.5:ENST00000534105.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	49	2	1.53845	1.71052	1.88259	0.0475376	0.0251849	0.153019	0.133519
chr5	53926821	53926921	2617072	0	-	0.39	(0.378,0.408]	chr5	248835	148	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	60	2	1.53052	1.71052	1.89052	0.0744544	0.0148147	0.192012	0.106702
chr7	73441896	73441996	3554273	0	-	0.54	(0.515,0.57]	chr7	330708	16	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	BAZ1B	ENSG00000009954.11	ENST00000339594.9:ENST00000404251.1	protein_coding	protein_coding	protein_coding	protein_coding	7	49	2	1.53845	1.71052	1.88259	0.0475376	0.0251849	0.153019	0.133519
chr7	6462174	6462273	3478143	0	-	0.343434	(0.32,0.35]	chr7	325446	12	UTR3	UTR3:EXON_MRNA:INTRON	DAGLB:KDELR2	ENSG00000164535.15:ENSG00000136240.10	ENST00000436575.5:ENST00000463747.1:ENST00000258739.9:ENST00000454368.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	11	105	2	1.60034	1.710505	1.82067	0.0221816	0.0163349	0.124191	0.101571
chr10	101787699	101787788	4680651	0	-	0.595506	(0.57,1]	chr10	431942	3	EXON_LNCRNA	EXON_LNCRNA:SS3_PROX:INTRON	OGA	ENSG00000198408.14	ENST00000439817.5:ENST00000361464.8:ENST00000462994.1:ENST00000357797.9:ENST00000482611.5:ENST00000494347.5:ENST00000479811.5:ENST00000461645.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	36	2	1.49341	1.7104849999999998	1.92756	0.0307286	0.0220439	0.143385	0.115395
chr7	2367145	2367245	3269756	0	+	0.58	(0.57,1]	chr7	303837	1	SS5_PROX	SS5_PROX:INTRON	EIF3B	ENSG00000106263.19	ENST00000360876.9:ENST00000397011.2:ENST00000466199.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	36	2	1.49341	1.7104849999999998	1.92756	0.0307286	0.0220439	0.143385	0.115395
chr22	19102764	19102864	7551818	0	-	0.47	(0.44,0.476]	chr22	771903	129	INTRON	INTRON	DGCR2	ENSG00000070413.20	ENST00000537045.5:ENST00000545799.5:ENST00000263196.12:ENST00000389262.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	14	113	2	1.68502	1.71029	1.73556	0.0115528	0.011054	0.0962115	0.0873897
chr3	152320626	152320726	1535505	0	+	0.29	(0.28,0.32]	chr3	159996	183	INTRON	INTRON	MBNL1	ENSG00000152601.18	ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000495875.6:ENST00000324210.10:ENST00000493459.5:ENST00000459747.1:ENST00000460591.5:ENST00000545754.5:ENST00000357472.7:ENST00000324196.9:ENST00000498502.5:ENST00000463374.5:ENST00000485910.5:ENST00000465907.6:ENST00000492948.5:ENST00000485509.5:ENST00000464596.5	protein_coding	protein_coding	protein_coding	protein_coding	15	155	2	1.48369	1.7102249999999999	1.93676	0.0340052	0.00371213	0.134802	0.0561984
chr1	89824569	89824668	159558	0	+	0.363636	(0.35,0.378]	chr1	17270	20	INTRON	INTRON	LRRC8D	ENSG00000171492.14	ENST00000525774.5:ENST00000337338.9:ENST00000394593.7	protein_coding	protein_coding	protein_coding	protein_coding	15	130	2	1.57247	1.710105	1.84774	0.0350068	0.00306702	0.137535	0.0509893
chr2	151470164	151470264	893843	0	+	0.33	(0.32,0.35]	chr2	99047	3	SS5_PROX	SS5_PROX:INTRON	RIF1	ENSG00000080345.18	ENST00000453091.6:ENST00000428287.6:ENST00000444746.7:ENST00000243326.9:ENST00000430328.6:ENST00000454583.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	59	2	1.69107	1.710025	1.72898	0.0517392	0.0425433	0.161951	0.159306
chr1	246568883	246568983	350007	0	+	0.41	(0.408,0.44]	chr1	40488	17	INTRON	INTRON	CNST	ENSG00000162852.14	ENST00000483271.1:ENST00000366513.9:ENST00000366512.7:ENST00000366511.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	80	2	1.64527	1.709785	1.7743	0.0244755	0.0175998	0.12011	0.11319
chr3	108056066	108056157	1768934	0	-	0.43956	(0.408,0.44]	chr3	178928	1	INTRON	INTRON	CD47	ENSG00000196776.17	ENST00000361309.6:ENST00000355354.13:ENST00000517766.5:ENST00000398258.7	protein_coding	protein_coding	protein_coding	protein_coding	11	77	2	1.47667	1.7097	1.94273	0.0456237	0.0180486	0.149888	0.114664
chr1	100091221	100091320	515436	0	-	0.414141	(0.408,0.44]	chr1	60434	26	INTRON	INTRON	SASS6	ENSG00000156876.10	ENST00000462159.1:ENST00000287482.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	48	2	1.60344	1.7095799999999999	1.81572	0.0626779	0.0387506	0.175915	0.160156
chr18	36025065	36025154	6963111	0	-	0.314607	(0.28,0.32]	chr18	689045	3	UTR3	UTR3:EXON_MRNA:INTRON	RPRD1A	ENSG00000141425.18	ENST00000399022.9:ENST00000590898.5:ENST00000357384.8:ENST00000588737.5:ENST00000585953.5	protein_coding	protein_coding	protein_coding	protein_coding	6	64	2	1.56134	1.70953	1.85772	0.0740624	0.0300199	0.191153	0.142135
chr3	23838490	23838590	1388055	0	+	0.49	(0.476,0.515]	chr3	145385	266	INTRON	INTRON	UBE2E1	ENSG00000170142.12	ENST00000306627.8:ENST00000346855.7:ENST00000495141.5:ENST00000442670.5:ENST00000424381.5:ENST00000467766.5:ENST00000475680.5:ENST00000452012.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	10	79	2	1.5222	1.7095099999999999	1.89682	0.0276881	0.0158424	0.137011	0.101453
chrX	24156623	24156723	7631070	0	+	0.42	(0.408,0.44]	chrX	781525	34	INTRON	INTRON	ZFX	ENSG00000005889.16	ENST00000428571.5:ENST00000539115.5:ENST00000379188.7:ENST00000304543.10:ENST00000419690.5:ENST00000379177.5:ENST00000459724.1:ENST00000480195.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	59	2	1.66104	1.709475	1.75791	0.0378795	0.0349715	0.157034	0.13747500000000001
chr7	155777927	155778026	3453255	0	+	0.343434	(0.32,0.35]	chr7	322755	29	UTR3	UTR3:EXON_MRNA	RBM33	ENSG00000184863.11	ENST00000401878.8:ENST00000341148.7	protein_coding	protein_coding	protein_coding	protein_coding	10	95	2	1.53859	1.7094	1.88021	0.0534261	0.00751788	0.162935	0.0773151
chr12	132650182	132650282	5448774	0	-	0.38	(0.378,0.408]	chr12	521743	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	POLE	ENSG00000177084.18	ENST00000320574.10:ENST00000672742.1:ENST00000672002.1:ENST00000537064.5:ENST00000535270.5:ENST00000536445.5:ENST00000503265.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	93	2	1.57136	1.70939	1.84742	0.0233757	0.013385	0.128037	0.0946278
chr4	60333	60423	1905359	0	+	0.388889	(0.378,0.408]	chr4	191001	3	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	ZNF595	ENSG00000272602.6	ENST00000608255.2:ENST00000609518.5:ENST00000509152.3:ENST00000610261.6:ENST00000502981.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	34	281	2	1.6277	1.709345	1.79099	0.00337718	0.00266163	0.0534141	0.0462582
chr8	23531384	23531484	3715121	0	+	0.5	(0.476,0.515]	chr8	345214	3	SS3_PROX	SS3_PROX:INTRON	SLC25A37	ENSG00000147454.14	ENST00000519973.6:ENST00000290075.10:ENST00000417331.6:ENST00000518881.5:ENST00000519192.1:ENST00000520654.1:ENST00000523930.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	18	139	2	1.25927	1.7093399999999999	2.15941	0.0360396	0.00126395	0.138959	0.0329641
chr16	9106641	9106740	6285522	0	+	0.373737	(0.35,0.378]	chr16	601929	35	UTR3	UTR3:EXON_MRNA:INTRON	C16orf72	ENSG00000182831.12	ENST00000327827.12:ENST00000574285.2	protein_coding	protein_coding	protein_coding	protein_coding	22	181	2	1.59662	1.70933	1.82204	0.00874368	0.00542588	0.0788605	0.0666592
chr19	57852792	57852888	7106061	0	+	0.395833	(0.378,0.408]	chr19	713226	24	INTRON	INTRON	ENSG00000268750:ZNF587	ENSG00000268750.7:ENSG00000198466.12	ENST00000597134.5:ENST00000596498.2:ENST00000593873.6:ENST00000603271.1:ENST00000598031.1:ENST00000604231.1:ENST00000339656.8:ENST00000423137.1:ENST00000484707.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	43	2	1.65821	1.709265	1.76032	0.0721577	0.0506302	0.187433	0.17547
chr3	149068039	149068139	1840809	0	-	0.38	(0.378,0.408]	chr3	185164	4	SS5_PROX	SS5_PROX:INTRON	HLTF	ENSG00000071794.16	ENST00000310053.10:ENST00000465259.5:ENST00000392912.6:ENST00000494055.5	protein_coding	protein_coding	protein_coding	protein_coding	5	43	2	1.65821	1.709265	1.76032	0.0721577	0.0506302	0.187433	0.17547
chr21	37081790	37081888	7404906	0	+	0.265306	[0,0.28]	chr21	754522	3	UTR5	UTR5:EXON_MRNA:INTRON	TTC3	ENSG00000182670.14	ENST00000492275.6:ENST00000418766.6:ENST00000485402.5:ENST00000450533.6:ENST00000438055.5:ENST00000696812.1:ENST00000696811.1:ENST00000463216.6:ENST00000481605.6:ENST00000540756.5:ENST00000494243.5:ENST00000399010.5:ENST00000411496.2:ENST00000399017.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	15	178	2	1.3929	1.70925	2.0256	0.0440473	0.0038935	0.149773	0.0568626
chr5	79612707	79612799	2398725	0	+	0.597826	(0.57,1]	chr5	231668	4	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TENT2	ENSG00000164329.14	ENST00000505571.5:ENST00000423041.6:ENST00000504233.5:ENST00000453514.6:ENST00000428308.6:ENST00000515807.5:ENST00000502269.1:ENST00000296783.7:ENST00000514095.5:ENST00000508620.5:ENST00000503620.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	16	65	2	1.69458	1.7092	1.72382	0.00764792	0.00679121	0.0753163	0.0744032
chr8	127999433	127999532	3862126	0	+	0.393939	(0.378,0.408]	chr8	355509	2	INTRON	INTRON	PVT1	ENSG00000249859.13	ENST00000667305.1:ENST00000690350.1:ENST00000653522.1:ENST00000661830.1:ENST00000657289.1:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000657211.1:ENST00000653845.1:ENST00000651587.1:ENST00000692980.1:ENST00000654324.1:ENST00000657693.1:ENST00000666080.1:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000662410.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000657356.1:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000667714.1:ENST00000654105.1:ENST00000660438.1:ENST00000664995.1:ENST00000670714.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000668123.1:ENST00000666776.1:ENST00000659912.1:ENST00000670532.1:ENST00000523068.2:ENST00000671088.1:ENST00000670204.1:ENST00000663461.1:ENST00000513868.6:ENST00000692433.1:ENST00000523190.7:ENST00000685606.1:ENST00000690788.1:ENST00000685634.1:ENST00000653990.1:ENST00000655783.1:ENST00000656411.1:ENST00000664742.1:ENST00000655099.1:ENST00000662709.1:ENST00000512617.7:ENST00000660122.1:ENST00000666452.1:ENST00000659666.1:ENST00000659892.1:ENST00000521600.5:ENST00000522875.5:ENST00000653497.1:ENST00000668098.1:ENST00000659106.1:ENST00000666147.1:ENST00000658350.1:ENST00000656999.1:ENST00000664610.1:ENST00000671092.1	lncRNA	lncRNA	lncRNA	lncRNA	5	43	2	1.59317	1.709185	1.8252	0.0619563	0.0603812	0.19151	0.174514
chr9	135942789	135942885	4372374	0	-	0.572917	(0.57,1]	chr9	402520	1	INTRON	INTRON	UBAC1	ENSG00000130560.9	ENST00000371756.4:ENST00000489050.5:ENST00000465873.5:ENST00000471163.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	19	76	2	1.5219800000000001	1.7090550000000002	1.89613	0.0094392	0.00281216	0.0817766	0.0489054
chr1	10050564	10050664	19302	0	+	0.46	(0.44,0.476]	chr1	1838	165	INTRON	INTRON	UBE4B	ENSG00000130939.20	ENST00000672724.1:ENST00000253251.12:ENST00000343090.11:ENST00000377153.5	protein_coding	protein_coding	protein_coding	protein_coding	7	57	2	1.65297	1.709035	1.7651	0.039388	0.0331814	0.145918	0.143072
chr1	75788478	75788575	144637	0	+	0.525773	(0.515,0.57]	chr1	16320	10	EXON_LNCRNA	EXON_LNCRNA:INTRON	RABGGTB	ENSG00000137955.16	ENST00000496055.5:ENST00000485459.5:ENST00000473406.5:ENST00000370826.3:ENST00000497648.1:ENST00000319942.8:ENST00000462042.5:ENST00000470201.5:ENST00000471759.5:ENST00000491266.5:ENST00000461653.5:ENST00000489450.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	16	105	2	1.47548	1.70898	1.94248	0.0124862	0.0115668	0.0962115	0.0923444
chr8	100941712	100941812	4005866	0	-	0.49	(0.476,0.515]	chr8	366668	68	INTRON	INTRON	YWHAZ	ENSG00000164924.18	ENST00000395958.6:ENST00000395957.6:ENST00000457309.2:ENST00000395956.7:ENST00000353245.7:ENST00000521309.5:ENST00000522542.5:ENST00000395953.6:ENST00000395948.6:ENST00000395951.7:ENST00000419477.6:ENST00000521607.5:ENST00000480304.5:ENST00000518736.5:ENST00000517727.5:ENST00000521328.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	74	2	1.38864	1.708765	2.02889	0.0547008	0.00978617	0.182743	0.0835427
chr18	46812233	46812332	6965661	0	-	0.353535	(0.35,0.378]	chr18	689435	92	UTR3	UTR3:EXON_MRNA	PIAS2	ENSG00000078043.16	ENST00000585916.6:ENST00000398654.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	63	2	1.49028	1.70866	1.92704	0.0590834	0.0228255	0.168067	0.125469
chr8	100714768	100714864	4005515	0	-	0.354167	(0.35,0.378]	chr8	366609	11	INTRON	INTRON	PABPC1	ENSG00000070756.17	ENST00000677140.1:ENST00000677787.1:ENST00000678709.1:ENST00000676662.1:ENST00000677765.1:ENST00000677892.1:ENST00000522720.2:ENST00000520804.2:ENST00000521865.6:ENST00000677478.1:ENST00000677380.1:ENST00000520142.2:ENST00000677775.1:ENST00000678954.1:ENST00000676655.1:ENST00000676976.1:ENST00000318607.10:ENST00000679197.1:ENST00000519100.6:ENST00000519004.5:ENST00000522387.5:ENST00000522658.6:ENST00000678822.1:ENST00000523555.6:ENST00000610907.2:ENST00000519596.5:ENST00000519622.5:ENST00000517921.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	63	2	1.49028	1.70866	1.92704	0.0590834	0.0228255	0.168067	0.125469
chr16	89479551	89479650	6543492	0	-	0.525253	(0.515,0.57]	chr16	634281	479	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	18	122	2	1.51973	1.7085750000000002	1.89742	0.0185053	0.00189287	0.108861	0.0402736
chr9	130773454	130773554	4214459	0	+	0.47	(0.44,0.476]	chr9	386427	586	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000393293.4	protein_coding	protein_coding	protein_coding	protein_coding	22	172	2	1.47072	1.708555	1.94639	0.0124557	0.00271426	0.0921837	0.0481064
chr16	89772770	89772870	6544353	0	-	0.44	(0.408,0.44]	chr16	634498	1	SS5_PROX	SS5_PROX:INTRON	FANCA	ENSG00000187741.16	ENST00000561667.2:ENST00000389301.8:ENST00000568369.6:ENST00000564475.6:ENST00000696275.1:ENST00000696287.1:ENST00000696286.1:ENST00000696274.1:ENST00000567510.2:ENST00000696291.1:ENST00000696276.1:ENST00000567205.2:ENST00000567284.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	12	96	2	1.56562	1.70852	1.85142	0.0185824	0.0127811	0.117258	0.0926667
chr2	108741181	108741279	847634	0	+	0.418367	(0.408,0.44]	chr2	94821	1	INTRON	INTRON	RANBP2	ENSG00000153201.16	ENST00000283195.11	protein_coding	protein_coding	protein_coding	protein_coding	12	85	2	1.15262	1.70851	2.2644	0.0580417	0.00768371	0.188651	0.0753803
chr3	33680782	33680882	1653629	0	-	0.38	(0.378,0.408]	chr3	169658	169	INTRON	INTRON	CLASP2	ENSG00000163539.18	ENST00000399362.8:ENST00000682230.1:ENST00000468888.6:ENST00000359576.9	protein_coding	protein_coding	protein_coding	protein_coding	9	73	2	1.23177	1.708445	2.18512	0.0747101	0.00902136	0.192652	0.0851259
chr7	148858704	148858804	3670507	0	-	0.3	(0.28,0.32]	chr7	340628	110	INTRON	INTRON	EZH2	ENSG00000106462.12	ENST00000683292.1:ENST00000320356.7:ENST00000492143.5:ENST00000478654.5:ENST00000350995.6:ENST00000460911.5:ENST00000683744.1:ENST00000682317.1:ENST00000682263.1:ENST00000684300.1:ENST00000476773.5:ENST00000483967.5:ENST00000498186.5:ENST00000483012.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	123	2	1.63866	1.70838	1.7781	0.0317527	0.00932885	0.13151	0.0856412
chr4	126614192	126614292	2236851	0	-	0.36	(0.35,0.378]	chr4	219023	1487	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	25	209	2	1.69096	1.708345	1.72573	0.0119037	0.00235326	0.0899583	0.044499
chr7	138462801	138462901	3434666	0	+	0.36	(0.35,0.378]	chr7	319959	11	INTRON	INTRON	TRIM24	ENSG00000122779.18	ENST00000343526.9:ENST00000415680.6:ENST00000497516.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	97	2	1.43939	1.70834	1.97729	0.0418517	0.00688871	0.147271	0.0750118
chr7	44015933	44016033	3527012	0	-	0.53	(0.515,0.57]	chr7	328874	1	SS5_PROX	SS5_PROX:INTRON	ENSG00000272655	ENSG00000272655.2	ENST00000326391.6:ENST00000418424.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	9	61	2	1.47127	1.7081	1.94493	0.0333563	0.0204583	0.134145	0.122204
chr2	71373740	71373838	807442	0	+	0.367347	(0.35,0.378]	chr2	90193	34	INTRON	INTRON	ZNF638	ENSG00000075292.19	ENST00000410075.5:ENST00000409544.5:ENST00000264447.9:ENST00000601581.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	14	128	2	1.48516	1.7079	1.93064	0.0259086	0.005615	0.133676	0.065373
chr7	157338311	157338405	3455312	0	+	0.510638	(0.476,0.515]	chr7	323048	1	INTRON	INTRON	DNAJB6	ENSG00000105993.15	ENST00000441561.5:ENST00000429029.6:ENST00000262177.9:ENST00000486083.6:ENST00000417758.5:ENST00000459889.5:ENST00000443280.5:ENST00000488001.5:ENST00000441291.5:ENST00000437030.5:ENST00000412557.5:ENST00000453383.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	18	144	2	1.41597	1.707855	1.99974	0.0199822	0.00269622	0.120668	0.0466548
chr16	89486639	89486739	6543563	0	-	0.49	(0.476,0.515]	chr16	634281	550	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	12	98	2	1.23367	1.70773	2.18179	0.0587374	0.00322689	0.189982	0.0507087
chr16	23882390	23882490	6324224	0	+	0.48	(0.476,0.515]	chr16	605697	132	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000645517.1:ENST00000498739.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	79	2	1.48441	1.7077	1.93099	0.0315624	0.0140312	0.144381	0.0959618
chr2	131088034	131088134	1229039	0	-	0.52	(0.515,0.57]	chr2	130994	50	INTRON	INTRON	FAM168B	ENSG00000152102.18	ENST00000389915.4:ENST00000409185.5	protein_coding	protein_coding	protein_coding	protein_coding	7	45	2	1.32981	1.70764	2.08547	0.0640038	0.0289426	0.199279	0.1274
chr4	57007697	57007795	1964230	0	+	0.326531	(0.32,0.35]	chr4	197152	3	INTRON	INTRON	POLR2B	ENSG00000047315.17	ENST00000381227.5:ENST00000431623.6:ENST00000441246.6:ENST00000314595.6	protein_coding	protein_coding	protein_coding	protein_coding	7	67	2	1.69107	1.70756	1.72405	0.0517392	0.0275418	0.159306	0.137011
chr2	38564437	38564537	1099378	0	-	0.52	(0.515,0.57]	chr2	117894	2	SS3_PROX	SS3_PROX:INTRON	HNRNPLL	ENSG00000143889.16	ENST00000449105.8:ENST00000409636.5:ENST00000358367.8:ENST00000608859.5:ENST00000378915.7:ENST00000272249.7:ENST00000409328.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	73	2	1.59358	1.7075	1.82142	0.0191173	0.0158706	0.109464	0.108861
chr3	15054163	15054261	1619930	0	-	0.428571	(0.408,0.44]	chr3	167447	3	INTRON	INTRON	MRPS25	ENSG00000131368.9	ENST00000695375.1:ENST00000695376.1:ENST00000695377.1:ENST00000695378.1:ENST00000695379.1:ENST00000695380.1:ENST00000695381.1:ENST00000695382.1:ENST00000496484.2:ENST00000695334.1:ENST00000695384.1:ENST00000695322.1:ENST00000447299.2:ENST00000695383.1:ENST00000474866.2:ENST00000695385.1:ENST00000695386.1:ENST00000420267.6:ENST00000695387.1:ENST00000695388.1:ENST00000695389.1:ENST00000695390.1:ENST00000695391.1:ENST00000695392.1:ENST00000449354.7:ENST00000695393.1:ENST00000695394.1:ENST00000253686.7:ENST00000695395.1:ENST00000695323.1:ENST00000444840.6:ENST00000695396.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	23	187	2	1.52386	1.7075	1.89114	0.00973345	0.0026692	0.0877284	0.0463735
chr7	158643988	158644088	3688151	0	-	0.3	(0.28,0.32]	chr7	342114	3	SS5_PROX	SS5_PROX:INTRON	NCAPG2	ENSG00000146918.20	ENST00000356309.8:ENST00000432615.5:ENST00000409423.5:ENST00000441982.5:ENST00000467785.5:ENST00000409339.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	78	2	1.6518	1.707365	1.76293	0.0766478	0.0193817	0.196164	0.119831
chr7	76357621	76357721	3562528	0	-	0.3	(0.28,0.32]	chr7	331942	270	INTRON	INTRON	YWHAG	ENSG00000170027.7	ENST00000307630.5	protein_coding	protein_coding	protein_coding	protein_coding	14	139	2	1.35256	1.707315	2.06207	0.0358563	0.00876132	0.138959	0.0846118
chr4	1725054	1725152	1910168	0	+	0.469388	(0.44,0.476]	chr4	191575	8	INTRON	INTRON	TACC3	ENSG00000013810.21	ENST00000458173.4:ENST00000651472.1:ENST00000612220.5:ENST00000484651.5:ENST00000313288.9:ENST00000467746.6:ENST00000493975.5:ENST00000652770.1:ENST00000651251.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	57	2	1.60176	1.707295	1.81283	0.0389597	0.0343005	0.160861	0.135641
chr1	227008589	227008689	648577	0	-	0.45	(0.44,0.476]	chr1	76894	31	INTRON	INTRON	CDC42BPA	ENSG00000143776.20	ENST00000366766.8:ENST00000366769.7:ENST00000334218.9:ENST00000366767.7:ENST00000448940.5:ENST00000442054.5:ENST00000366764.8:ENST00000429440.5	protein_coding	protein_coding	protein_coding	protein_coding	11	87	2	1.20745	1.7072949999999998	2.20714	0.0635101	0.00493236	0.198164	0.061186
chr12	54237785	54237885	5330466	0	-	0.32	(0.28,0.32]	chr12	508602	70	UTR3	UTR3:EXON_MRNA	CBX5	ENSG00000094916.16	ENST00000209875.9	protein_coding	protein_coding	protein_coding	protein_coding	9	89	2	1.4463	1.70716	1.96802	0.0388417	0.0251578	0.160515	0.12011
chr1	70231483	70231577	142701	0	+	0.404255	(0.378,0.408]	chr1	15995	4	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SRSF11	ENSG00000116754.14	ENST00000370951.5:ENST00000687381.1:ENST00000370950.7:ENST00000475204.5:ENST00000370949.2:ENST00000395136.7:ENST00000473950.5:ENST00000486667.5:ENST00000481648.5:ENST00000484162.5:ENST00000463859.6:ENST00000690370.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	33	261	2	1.59608	1.70715	1.81822	0.00351646	0.00325053	0.0526132	0.0524329
chr18	194474	194572	6855190	0	+	0.346939	(0.32,0.35]	chr18	679527	12	INTRON	INTRON	USP14	ENSG00000101557.15	ENST00000582707.5:ENST00000400266.7:ENST00000261601.8:ENST00000578942.5:ENST00000383589.6:ENST00000583119.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	77	2	1.60939	1.70713	1.80487	0.0439266	0.0210603	0.14937	0.122559
chr5	6607384	6607484	2566510	0	-	0.34	(0.32,0.35]	chr5	245905	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	NSUN2	ENSG00000037474.15	ENST00000264670.11:ENST00000504374.5:ENST00000505892.5:ENST00000506139.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	77	2	1.60939	1.70713	1.80487	0.0439266	0.0210603	0.14937	0.122559
chr19	537746	537846	6991779	0	+	0.51	(0.476,0.515]	chr19	692123	2	INTRON	INTRON	CDC34	ENSG00000099804.9	ENST00000215574.9:ENST00000586283.6:ENST00000607527.5:ENST00000606065.3:ENST00000606400.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	73	2	1.50151	1.7071049999999999	1.9127	0.054954	0.00864134	0.165463	0.0840615
chr9	130784453	130784553	4214569	0	+	0.33	(0.32,0.35]	chr9	386427	696	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000393293.4	protein_coding	protein_coding	protein_coding	protein_coding	16	151	2	1.55627	1.707005	1.85774	0.0182332	0.0061655	0.10787	0.0712486
chr1	77697031	77697126	493484	0	-	0.378947	(0.378,0.408]	chr1	58327	12	UTR3	UTR3:EXON_MRNA	USP33	ENSG00000077254.14	ENST00000370794.7:ENST00000370793.5:ENST00000357428.5:ENST00000481579.5	protein_coding	protein_coding	protein_coding	protein_coding	17	141	2	1.52659	1.7069649999999998	1.88734	0.0180899	0.00371027	0.107214	0.0561833
chr10	918590	918690	4542456	0	-	0.38	(0.378,0.408]	chr10	419304	152	INTRON	INTRON	LARP4B	ENSG00000107929.16	ENST00000316157.8:ENST00000690516.1:ENST00000476529.5:ENST00000406525.6:ENST00000481118.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	13	106	2	1.46278	1.70689	1.951	0.0228092	0.00907019	0.125469	0.0807886
chr9	131439855	131439953	4217432	0	+	0.408163	(0.378,0.408]	chr9	386746	4	INTRON	INTRON	PRRC2B	ENSG00000288701.1	ENST00000684596.1:ENST00000683519.1:ENST00000682501.1	protein_coding	protein_coding	protein_coding	protein_coding	11	89	2	1.52653	1.706845	1.88716	0.0217942	0.017192	0.123836	0.104099
chr4	70985506	70985605	1971343	0	+	0.353535	(0.35,0.378]	chr4	197611	36	UTR3	UTR3:EXON_MRNA:INTRON	MOB1B	ENSG00000173542.9	ENST00000309395.7:ENST00000511449.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	29	245	2	1.70418	1.7068050000000001	1.70943	0.00717592	0.0023623	0.0725212	0.0446425
chr11	86056070	86056170	5014713	0	-	0.38	(0.378,0.408]	chr11	473022	241	INTRON	INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000630913.2:ENST00000528398.5:ENST00000356360.9:ENST00000534412.5:ENST00000531558.1:ENST00000531930.5:ENST00000532041.5:ENST00000525162.5:ENST00000528256.1:ENST00000528411.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	69	2	1.58835	1.706775	1.8252	0.0619563	0.0172286	0.174514	0.111597
chr15	84548173	84548273	6251146	0	-	0.29	(0.28,0.32]	chr15	596581	15	INTRON	INTRON	UBE2Q2P1	ENSG00000189136.9	ENST00000354771.8:ENST00000339094.5:ENST00000561403.6:ENST00000558251.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	13	115	2	1.2359	1.70673	2.17756	0.0434195	0.0130851	0.162255	0.0934394
chr19	21450171	21450270	7158705	0	-	0.474747	(0.44,0.476]	chr19	723691	4	INTRON	INTRON	ENSG00000268119	ENSG00000268119.7	ENST00000596705.5:ENST00000597444.6	lncRNA	lncRNA	lncRNA	lncRNA	14	113	2	1.65568	1.70668	1.75768	0.0130261	0.0101204	0.099362	0.0850389
chr1	23787661	23787756	44880	0	+	0.336842	(0.32,0.35]	chr1	5473	4	UTR3	UTR3:EXON_MRNA	PITHD1	ENSG00000057757.10	ENST00000246151.9:ENST00000374524.1	protein_coding	protein_coding	protein_coding	protein_coding	25	224	2	1.56091	1.7066750000000002	1.85244	0.00642251	0.00571339	0.0730141	0.0657377
chr5	138574537	138574626	2732909	0	-	0.359551	(0.35,0.378]	chr5	257501	4	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HSPA9	ENSG00000113013.16	ENST00000677693.1:ENST00000677064.1:ENST00000678300.1:ENST00000677425.1:ENST00000649578.2:ENST00000677988.1:ENST00000297185.9:ENST00000677527.1:ENST00000678794.1:ENST00000677553.1:ENST00000678384.1:ENST00000678051.1:ENST00000677066.1:ENST00000649692.2:ENST00000678551.1:ENST00000524109.2:ENST00000507115.6:ENST00000507097.5:ENST00000504902.6:ENST00000508003.2:ENST00000506477.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	97	2	1.54128	1.706615	1.87195	0.0385205	0.00738821	0.1426	0.0769106
chr7	105341960	105342060	3603436	0	-	0.54	(0.515,0.57]	chr7	336161	350	INTRON	INTRON	SRPK2	ENSG00000135250.17	ENST00000393651.8:ENST00000482897.5:ENST00000460391.5:ENST00000462282.5:ENST00000465112.5:ENST00000482862.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	43	2	1.60221	1.706605	1.811	0.0581855	0.0325989	0.188704	0.133687
chr5	139326384	139326484	2499725	0	+	0.34	(0.32,0.35]	chr5	238977	1	SS5_PROX	SS5_PROX:INTRON	MATR3	ENSG00000280987.4:ENSG00000015479.20	ENST00000509990.5:ENST00000361059.7:ENST00000394800.6:ENST00000502929.5:ENST00000504203.5:ENST00000502499.5:ENST00000510056.5:ENST00000394805.8:ENST00000503811.5:ENST00000618441.5:ENST00000505625.5:ENST00000502422.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	69	2	1.47118	1.7066	1.94202	0.0486128	0.0345598	0.153946	0.148144
chr5	139281443	139281542	2499251	0	+	0.444444	(0.44,0.476]	chr5	238886	6	INTRON	INTRON	MATR3:SNHG4	ENSG00000280987.4:ENSG00000281398.4	ENST00000509990.5:ENST00000506147.5:ENST00000512107.5:ENST00000361059.7:ENST00000506188.5:ENST00000394800.6:ENST00000502929.5:ENST00000504203.5:ENST00000514694.5:ENST00000507197.5:ENST00000509644.5:ENST00000505016.2:ENST00000505522.6:ENST00000502394.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	17	138	2	1.63736	1.70657	1.77578	0.0105236	0.00831527	0.0908969	0.0774402
chr5	136490938	136491038	2493651	0	+	0.43	(0.408,0.44]	chr5	238200	237	INTRON	INTRON	ENSG00000249803	ENSG00000249803.6	ENST00000653158.1:ENST00000446720.3:ENST00000665110.1:ENST00000511165.6:ENST00000666378.1:ENST00000657590.1:ENST00000658501.1:ENST00000660537.1:ENST00000659712.1	lncRNA	lncRNA	lncRNA	lncRNA	7	58	2	1.53812	1.70651	1.8749	0.0501609	0.0264246	0.156383	0.133676
chr13	114290888	114290988	5550922	0	+	0.5	(0.476,0.515]	chr13	530565	34	INTRON	INTRON	UPF3A	ENSG00000169062.15	ENST00000375299.8:ENST00000351487.5:ENST00000484246.5:ENST00000480362.5:ENST00000474056.5:ENST00000493727.5:ENST00000481131.5:ENST00000479712.1:ENST00000475218.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	41	2	1.61586	1.706395	1.79693	0.0649782	0.0567093	0.185107	0.179417
chr19	314742	314842	7109303	0	-	0.48	(0.476,0.515]	chr19	713786	7	INTRON	INTRON	MIER2	ENSG00000105556.12	ENST00000264819.7	protein_coding	protein_coding	protein_coding	protein_coding	5	41	2	1.61586	1.706395	1.79693	0.0649782	0.0567093	0.185107	0.179417
chr19	5938530	5938629	7125203	0	-	0.515152	(0.476,0.515]	chr19	717348	23	INTRON	INTRON	RANBP3	ENSG00000031823.14	ENST00000340578.10:ENST00000439268.6:ENST00000592771.5:ENST00000591092.5:ENST00000034275.12:ENST00000587479.2:ENST00000592621.5:ENST00000590623.5:ENST00000591736.5:ENST00000590953.5:ENST00000588879.5:ENST00000587159.5:ENST00000586117.5:ENST00000589353.5:ENST00000587463.5:ENST00000588010.5:ENST00000591124.5:ENST00000585339.5:ENST00000592133.5:ENST00000591881.5:ENST00000589886.5:ENST00000587263.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	41	2	1.61586	1.706395	1.79693	0.0649782	0.0567093	0.185107	0.179417
chr10	49959677	49959777	4432808	0	+	0.31	(0.28,0.32]	chr10	408699	8	INTRON	INTRON	TIMM23B:TIMM23B-AGAP6	ENSG00000204152.14:ENSG00000178440.8	ENST00000478381.5:ENST00000651259.3:ENST00000651763.1:ENST00000651208.1:ENST00000652716.1:ENST00000483296.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	15	153	2	1.42121	1.706365	1.99152	0.03176	0.00509793	0.13151	0.0646039
chr5	10379430	10379528	2317906	0	+	0.387755	(0.378,0.408]	chr5	224624	2	INTRON	INTRON	MARCHF6	ENSG00000145495.16	ENST00000274140.10:ENST00000449913.6:ENST00000502795.5:ENST00000511802.5:ENST00000503788.5:ENST00000640713.1:ENST00000510872.5:ENST00000507863.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	12	88	2	1.23968	1.7063199999999998	2.17296	0.043845	0.0110512	0.162255	0.0873897
chr16	22285082	22285181	6321485	0	+	0.50505	(0.476,0.515]	chr16	605178	12	UTR3	UTR3:EXON_MRNA	EEF2K	ENSG00000103319.12	ENST00000263026.10	protein_coding	protein_coding	protein_coding	protein_coding	7	53	2	1.48272	1.70628	1.92984	0.0466474	0.0410274	0.161534	0.151522
chr14	31007853	31007952	5857688	0	-	0.525253	(0.515,0.57]	chr14	556508	435	INTRON	INTRON	STRN3	ENSG00000196792.12	ENST00000355683.9:ENST00000357479.10:ENST00000555358.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	14	95	2	1.53025	1.7061950000000001	1.88214	0.0216707	0.00447641	0.11491	0.0610799
chr11	9580540	9580638	4730868	0	+	0.5	(0.476,0.515]	chr11	438106	28	EXON_MRNA	EXON_MRNA:INTRON	WEE1	ENSG00000166483.12	ENST00000680141.1:ENST00000450114.7:ENST00000299613.10:ENST00000524549.1:ENST00000681684.1:ENST00000524612.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	88	2	1.59493	1.70617	1.81741	0.0213255	0.0141271	0.123504	0.0959618
chr1	223758397	223758494	320726	0	+	0.515464	(0.515,0.57]	chr1	36914	9	EXON_LNCRNA	EXON_LNCRNA:INTRON	CAPN2	ENSG00000162909.18	ENST00000433674.6:ENST00000295006.6:ENST00000474026.5:ENST00000487223.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	75	2	1.47127	1.706105	1.94094	0.0333563	0.00719628	0.134145	0.0756137
chr9	5079434	5079532	4096783	0	+	0.367347	(0.35,0.378]	chr9	373321	6	INTRON	INTRON	JAK2	ENSG00000096968.14	ENST00000381652.4	protein_coding	protein_coding	protein_coding	protein_coding	7	63	2	1.5118	1.706105	1.90041	0.0789277	0.0145936	0.198963	0.105992
chr17	59841180	59841278	6643747	0	+	0.428571	(0.408,0.44]	chr17	648787	14	UTR3	UTR3:EXON_MRNA	VMP1	ENSG00000062716.13	ENST00000262291.9:ENST00000592790.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	50	391	2	1.6917	1.70597	1.72024	0.00273218	0.00107144	0.0467843	0.0300133
chr14	103408156	103408256	5825849	0	+	0.52	(0.515,0.57]	chr14	552794	25	INTRON	INTRON	MARK3	ENSG00000075413.19	ENST00000678179.1:ENST00000676838.1:ENST00000677348.1:ENST00000677404.1:ENST00000676694.1:ENST00000676938.1:ENST00000678619.1:ENST00000676897.1:ENST00000677214.1:ENST00000677942.1:ENST00000676830.1:ENST00000678999.1:ENST00000677228.1:ENST00000556744.2:ENST00000677104.1:ENST00000679330.1:ENST00000560417.6:ENST00000440884.7:ENST00000676475.1:ENST00000677035.1:ENST00000678022.1:ENST00000677560.1:ENST00000561314.6:ENST00000429436.7:ENST00000677118.1:ENST00000676564.1:ENST00000678169.1:ENST00000678175.1:ENST00000678897.1:ENST00000678278.1:ENST00000676645.1:ENST00000677829.1:ENST00000678302.1:ENST00000677133.1:ENST00000561164.2:ENST00000558223.6:ENST00000559328.6:ENST00000678207.1:ENST00000677360.1:ENST00000676905.1:ENST00000678343.1:ENST00000677347.1:ENST00000678071.1:ENST00000677432.1:ENST00000678237.1:ENST00000677604.1:ENST00000676518.1:ENST00000677051.1:ENST00000677857.1:ENST00000677869.1:ENST00000678423.1:ENST00000560603.6:ENST00000416682.6:ENST00000303622.13:ENST00000216288.11:ENST00000679105.1:ENST00000553942.5:ENST00000335102.9:ENST00000561225.1:ENST00000678091.1:ENST00000561071.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	49	2	1.56681	1.7059600000000001	1.84511	0.064862	0.0167182	0.179394	0.110511
chr11	70436308	70436408	4822017	0	+	0.63	(0.57,1]	chr11	449688	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	CTTN	ENSG00000085733.16	ENST00000346329.7:ENST00000301843.13:ENST00000376561.7:ENST00000529736.5	protein_coding	protein_coding	protein_coding	protein_coding	13	55	2	1.28607	1.705955	2.12584	0.0504184	0.00173926	0.174922	0.0375363
chr7	6481496	6481594	3478342	0	-	0.367347	(0.35,0.378]	chr7	325469	69	INTRON	INTRON	DAGLB:KDELR2	ENSG00000164535.15:ENSG00000136240.10	ENST00000436575.5:ENST00000463747.1:ENST00000258739.9:ENST00000490996.1:ENST00000382267.3:ENST00000462052.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	14	122	2	1.54128	1.7059199999999999	1.87056	0.0385205	0.00335247	0.1426	0.0531277
chr11	64775299	64775399	4965274	0	-	0.39	(0.378,0.408]	chr11	467538	14	INTRON	INTRON	SF1	ENSG00000168066.21	ENST00000334944.9:ENST00000227503.13:ENST00000377394.7:ENST00000448404.5:ENST00000377390.8:ENST00000377387.5:ENST00000681407.1:ENST00000433274.6:ENST00000633899.1:ENST00000413951.5:ENST00000432725.1:ENST00000482693.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	83	2	1.64169	1.7057600000000002	1.76983	0.0377255	0.0109303	0.14078	0.0924702
chr9	33000235	33000334	4242765	0	-	0.373737	(0.35,0.378]	chr9	389995	25	INTRON	INTRON	APTX	ENSG00000137074.20	ENST00000672846.1:ENST00000672519.1:ENST00000672244.1:ENST00000673416.1:ENST00000673360.1:ENST00000379825.7:ENST00000379817.7:ENST00000397172.8:ENST00000494649.5:ENST00000436040.7:ENST00000472896.6:ENST00000465003.6:ENST00000479656.6:ENST00000673487.1:ENST00000467331.6:ENST00000482687.6:ENST00000483148.6:ENST00000672438.1:ENST00000485479.6:ENST00000673598.1:ENST00000460940.6:ENST00000309615.8:ENST00000379819.6:ENST00000672286.1:ENST00000673248.1:ENST00000474658.7:ENST00000495360.6:ENST00000672281.1:ENST00000476858.6:ENST00000672535.1:ENST00000463596.6:ENST00000379813.7:ENST00000468275.6:ENST00000477119.2:ENST00000671912.1:ENST00000464632.6:ENST00000478279.6:ENST00000480031.6:ENST00000460945.6:ENST00000494973.1:ENST00000672553.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	63	2	1.49446	1.70576	1.91706	0.054297	0.026412	0.182243	0.122506
chr10	35360370	35360470	4424741	0	+	0.5	(0.476,0.515]	chr10	407899	228	INTRON	INTRON	CCNY	ENSG00000108100.18	ENST00000374706.5:ENST00000490012.6:ENST00000493157.6:ENST00000374704.8:ENST00000265375.13:ENST00000339497.7:ENST00000492478.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	14	107	2	1.2227	1.70572	2.18874	0.0498173	0.00255859	0.156383	0.0466761
chr1	85653563	85653662	497496	0	-	0.50505	(0.476,0.515]	chr1	58991	43	UTR3	UTR3:EXON_MRNA	ZNHIT6	ENSG00000117174.11	ENST00000370574.4:ENST00000431532.6	protein_coding	protein_coding	protein_coding	protein_coding	16	123	2	1.28747	1.70547	2.12347	0.0360161	0.00222235	0.138959	0.0435144
chr10	35360869	35360969	4424746	0	+	0.54	(0.515,0.57]	chr10	407899	233	INTRON	INTRON	CCNY	ENSG00000108100.18	ENST00000374706.5:ENST00000490012.6:ENST00000493157.6:ENST00000374704.8:ENST00000265375.13:ENST00000339497.7:ENST00000492478.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	55	2	1.63184	1.70536	1.77888	0.0545832	0.0139834	0.165292	0.10247
chr22	21817642	21817741	7560886	0	-	0.454545	(0.44,0.476]	chr22	773388	94	INTRON	INTRON	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	9	73	2	1.54104	1.7053150000000001	1.86959	0.0339289	0.0176166	0.146815	0.105146
chr7	119594784	119594884	3627284	0	-	0.41	(0.408,0.44]	chr7	337315	943	INTRON	INTRON	LINC02476	ENSG00000225546.6	ENST00000660268.1	lncRNA	lncRNA	lncRNA	lncRNA	9	74	2	1.49789	1.70529	1.91269	0.0390091	0.0153219	0.161009	0.100173
chr8	11806078	11806176	3702555	0	+	0.591837	(0.57,1]	chr8	343487	22	INTRON	INTRON	FDFT1	ENSG00000079459.13	ENST00000538689.4:ENST00000615631.4:ENST00000618539.4:ENST00000530337.5:ENST00000623368.3:ENST00000446331.6:ENST00000443614.6:ENST00000220584.9:ENST00000525607.5:ENST00000525283.5:ENST00000529464.5:ENST00000525900.5:ENST00000528812.5:ENST00000622850.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	10	35	2	1.17344	1.7052749999999999	2.23711	0.0618602	0.0172108	0.193604	0.104099
chr3	42630971	42631070	1406285	0	+	0.353535	(0.35,0.378]	chr3	147682	5	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NKTR	ENSG00000114857.19	ENST00000468735.6:ENST00000429888.5:ENST00000232978.13:ENST00000465584.5:ENST00000466553.1:ENST00000498730.5:ENST00000472127.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	84	2	1.65955	1.70518	1.75081	0.0427459	0.0133768	0.148082	0.10089
chr1	31035551	31035651	412594	0	-	0.51	(0.476,0.515]	chr1	49733	63	INTRON	INTRON	PUM1	ENSG00000134644.16	ENST00000426105.7:ENST00000373747.7:ENST00000257075.9:ENST00000424085.6:ENST00000525843.5:ENST00000440538.6:ENST00000373741.8:ENST00000373742.6:ENST00000526215.5:ENST00000525948.5:ENST00000480602.1:ENST00000524516.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	47	2	1.48023	1.705035	1.92984	0.0559072	0.0466474	0.18407	0.151522
chr5	54112801	54112901	2618935	0	-	0.42	(0.408,0.44]	chr5	248842	2	SS5_PROX	SS5_PROX:INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	16	115	2	1.46471	1.7050100000000001	1.94531	0.0136489	0.0126554	0.0982897	0.0949306
chr3	152351513	152351613	1535816	0	+	0.29	(0.28,0.32]	chr3	160003	159	INTRON	INTRON	MBNL1	ENSG00000152601.18	ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000495875.6:ENST00000324210.10:ENST00000493459.5:ENST00000459747.1:ENST00000460591.5:ENST00000545754.5:ENST00000357472.7:ENST00000324196.9:ENST00000498502.5:ENST00000463374.5:ENST00000485910.5:ENST00000465907.6:ENST00000492948.5:ENST00000485509.5:ENST00000464596.5	protein_coding	protein_coding	protein_coding	protein_coding	9	89	2	1.34841	1.70499	2.06157	0.0525144	0.0189458	0.178179	0.108861
chr1	32329479	32329578	65099	0	+	0.414141	(0.408,0.44]	chr1	8351	1	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	HDAC1	ENSG00000116478.12	ENST00000373548.8:ENST00000490081.5:ENST00000482310.5:ENST00000476391.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	13	102	2	1.53079	1.7049150000000002	1.87904	0.0173197	0.011526	0.112111	0.0889104
chr11	65431360	65431460	4805856	0	+	0.31	(0.28,0.32]	chr11	446554	87	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	55	531	2	1.563	1.7048999999999999	1.8468	0.0032296	0.00270107	0.0524329	0.0467364
chr1	65296568	65296668	135959	0	+	0.43	(0.408,0.44]	chr1	15346	313	INTRON	INTRON	DNAJC6	ENSG00000116675.16	ENST00000463018.5:ENST00000494710.6:ENST00000263441.11:ENST00000395325.7:ENST00000483402.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	15	123	2	1.4727	1.70486	1.93702	0.0217118	0.00486755	0.123836	0.0607461
chr12	112085993	112086092	5415195	0	-	0.20202	[0,0.28]	chr12	517230	45	INTRON	INTRON	NAA25	ENSG00000111300.10	ENST00000261745.9:ENST00000552527.5:ENST00000549711.5:ENST00000551858.1:ENST00000547133.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	84	2	1.67675	1.704505	1.73226	0.0524108	0.0352695	0.160429	0.150332
chr20	3917992	3918081	7227192	0	+	0.359551	(0.35,0.378]	chr20	734516	6	INTRON	INTRON	PANK2	ENSG00000125779.24	ENST00000497424.5:ENST00000316562.9:ENST00000495692.5:ENST00000610179.7:ENST00000643504.2:ENST00000336066.8:ENST00000646394.1:ENST00000621507.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	70	2	1.33846	1.704475	2.07049	0.0687435	0.0140397	0.184298	0.102801
chr17	62040687	62040786	6810634	0	-	0.323232	(0.32,0.35]	chr17	672946	47	INTRON	INTRON	MED13	ENSG00000108510.10	ENST00000397786.7	protein_coding	protein_coding	protein_coding	protein_coding	19	148	2	1.21134	1.704205	2.19707	0.0305698	0.00625395	0.143385	0.0684171
chr5	32172845	32172945	2597501	0	-	0.3	(0.28,0.32]	chr5	246744	286	INTRON	INTRON	GOLPH3	ENSG00000113384.14	ENST00000265070.7:ENST00000503610.5:ENST00000512668.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	16	163	2	1.63613	1.704125	1.77212	0.0206743	0.00629186	0.110999	0.0722266
chr1	30945145	30945245	411665	0	-	0.5	(0.476,0.515]	chr1	49628	4	SS5_PROX	SS5_PROX:INTRON	PUM1	ENSG00000134644.16	ENST00000426105.7:ENST00000373747.7:ENST00000257075.9:ENST00000424085.6:ENST00000525843.5:ENST00000440538.6:ENST00000498419.5:ENST00000373741.8:ENST00000373742.6:ENST00000530669.1:ENST00000529846.5:ENST00000525997.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	50	2	1.61586	1.703865	1.79187	0.0567093	0.0362169	0.185107	0.138959
chr4	126673272	126673372	2237442	0	-	0.38	(0.378,0.408]	chr4	219023	2078	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	8	61	2	1.46085	1.70383	1.94681	0.0457723	0.0343503	0.149888	0.147468
chr19	38659047	38659147	7065842	0	+	0.43	(0.408,0.44]	chr19	705486	104	INTRON	INTRON	ACTN4	ENSG00000130402.13	ENST00000252699.7:ENST00000588618.5:ENST00000440400.2:ENST00000424234.7:ENST00000589528.1:ENST00000390009.7:ENST00000495553.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	50	2	1.53263	1.703765	1.8749	0.0733439	0.0264246	0.190051	0.133676
chr1	6189479	6189577	366097	0	-	0.44898	(0.44,0.476]	chr1	43018	23	INTRON	INTRON	RPL22	ENSG00000116251.11	ENST00000234875.9:ENST00000480661.1:ENST00000497965.5:ENST00000471204.5:ENST00000465387.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	73	2	1.56617	1.7037550000000001	1.84134	0.0338203	0.0175428	0.134476	0.11319
chr1	235324714	235324813	663828	0	-	0.50505	(0.476,0.515]	chr1	78552	636	INTRON	INTRON	ARID4B	ENSG00000054267.22	ENST00000349213.7:ENST00000366603.6:ENST00000264183.9:ENST00000421364.5:ENST00000491632.5:ENST00000418304.1:ENST00000466653.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	85	2	1.58148	1.7037149999999999	1.82595	0.0202339	0.0175606	0.11319	0.109955
chr17	50964671	50964771	6795398	0	-	0.3	(0.28,0.32]	chr17	670813	26	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SPAG9	ENSG00000008294.22	ENST00000262013.12:ENST00000509724.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	84	2	1.40698	1.7036449999999999	2.00031	0.0778529	0.0110488	0.196685	0.0928193
chr3	37259960	37260059	1395921	0	+	0.363636	(0.35,0.378]	chr3	146319	81	INTRON	INTRON	GOLGA4	ENSG00000144674.17	ENST00000435830.6:ENST00000444882.5:ENST00000356847.8:ENST00000450863.6:ENST00000361924.7:ENST00000429018.5:ENST00000431105.1:ENST00000419177.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	84	2	1.21688	1.7036099999999998	2.19034	0.0431114	0.023941	0.162255	0.119443
chr7	158825343	158825443	3689772	0	-	0.53	(0.515,0.57]	chr7	342421	259	INTRON	INTRON	ESYT2	ENSG00000117868.18	ENST00000251527.10:ENST00000275418.13:ENST00000652148.1:ENST00000483958.5:ENST00000497111.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	49	2	1.58964	1.7035399999999998	1.81744	0.0408	0.031028	0.1451	0.143457
chr5	145793475	145793575	2746220	0	-	0.35	(0.32,0.35]	chr5	258689	281	INTRON	INTRON	PRELID2	ENSG00000186314.12	ENST00000510594.1:ENST00000683046.1:ENST00000334744.8:ENST00000394450.6:ENST00000505416.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	67	2	1.38564	1.703485	2.02133	0.0793006	0.017146	0.199711	0.111072
chr16	10457629	10457729	6287004	0	+	0.3	(0.28,0.32]	chr16	602016	1	SS5_PROX	SS5_PROX:INTRON	ATF7IP2	ENSG00000166669.14	ENST00000396559.5:ENST00000396560.6:ENST00000543967.5:ENST00000562102.6:ENST00000535850.5:ENST00000568027.5:ENST00000324570.9:ENST00000356427.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	73	2	1.68409	1.7034799999999999	1.72287	0.0548665	0.0286502	0.165463	0.139456
chr3	177163477	177163577	1872107	0	-	0.35	(0.32,0.35]	chr3	187429	1	SS5_PROX	SS5_PROX:INTRON	TBL1XR1	ENSG00000177565.18	ENST00000457928.7:ENST00000430069.5:ENST00000673974.1:ENST00000352800.10:ENST00000422442.6:ENST00000428970.5:ENST00000424913.5:ENST00000437738.5:ENST00000431421.5:ENST00000635794.1:ENST00000630796.2:ENST00000450267.5:ENST00000630833.2:ENST00000431674.5:ENST00000422066.5:ENST00000443315.5:ENST00000627825.2:ENST00000427349.5:ENST00000413084.5:ENST00000637137.1:ENST00000491623.2:ENST00000637544.1:ENST00000636187.1:ENST00000636912.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	15	138	2	1.6359	1.703405	1.77091	0.0146308	0.0103455	0.0982604	0.0896084
chr7	139362615	139362715	3437615	0	+	0.41	(0.408,0.44]	chr7	320318	19	INTRON	INTRON	LUC7L2:FMC1-LUC7L2	ENSG00000146963.18:ENSG00000269955.2	ENST00000541170.7:ENST00000541515.3:ENST00000608368.5:ENST00000619796.4:ENST00000354926.9:ENST00000435096.1:ENST00000456182.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	33	251	2	1.43706	1.70326	1.96946	0.00710995	0.00156253	0.0756118	0.0360583
chr7	99447272	99447372	3361936	0	+	0.49	(0.476,0.515]	chr7	313982	1	SS3_PROX	SS3_PROX:INTRON	CPSF4	ENSG00000160917.15	ENST00000436336.6:ENST00000292476.10:ENST00000451876.5:ENST00000430038.5:ENST00000441580.5:ENST00000412686.5:ENST00000484112.5:ENST00000452047.1:ENST00000471455.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	41	2	1.68092	1.70325	1.72558	0.0767648	0.0474026	0.196164	0.169265
chr19	10176791	10176891	7134686	0	-	0.47	(0.44,0.476]	chr19	719221	1	SS5_PROX	SS5_PROX:INTRON	DNMT1	ENSG00000130816.17	ENST00000340748.8:ENST00000359526.9:ENST00000592705.5:ENST00000679103.1:ENST00000677634.1:ENST00000676820.1:ENST00000677250.1:ENST00000677013.1:ENST00000677685.1:ENST00000677616.1:ENST00000676604.1:ENST00000678024.1:ENST00000676610.1:ENST00000678804.1:ENST00000679313.1:ENST00000677946.1:ENST00000586988.5:ENST00000588952.5:ENST00000588118.5:ENST00000592342.5:ENST00000592054.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	13	102	2	1.34727	1.703235	2.0592	0.0344229	0.00556585	0.147767	0.0648867
chr7	66702575	66702675	3325093	0	+	0.37	(0.35,0.378]	chr7	309221	170	INTRON	INTRON	RABGEF1	ENSG00000154710.18	ENST00000607882.5	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	5	45	2	1.65083	1.70322	1.75561	0.0739399	0.0521072	0.190914	0.177022
chr13	110905599	110905666	5650554	0	-	0.373134	(0.35,0.378]	chr13	538381	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ANKRD10	ENSG00000088448.14	ENST00000267339.6:ENST00000489973.6:ENST00000310847.8:ENST00000465753.1:ENST00000494859.5:ENST00000464579.1:ENST00000463156.1:ENST00000460846.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	45	2	1.58862	1.703145	1.81767	0.0640429	0.0615516	0.193423	0.177882
chr6	167926380	167926479	3035360	0	+	0.444444	(0.44,0.476]	chr6	282838	9	INTRON	INTRON	AFDN	ENSG00000130396.21	ENST00000683244.1:ENST00000351017.9:ENST00000344191.8:ENST00000392112.5:ENST00000392108.7:ENST00000400822.7:ENST00000447894.6:ENST00000366809.6:ENST00000366806.6:ENST00000511637.5:ENST00000485634.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	69	2	1.33609	1.703125	2.07016	0.0510862	0.0151815	0.176696	0.0994339
chr11	85980245	85980341	5013928	0	-	0.53125	(0.515,0.57]	chr11	472923	17	INTRON	INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000530692.5:ENST00000630913.2:ENST00000529760.5:ENST00000528398.5:ENST00000532603.5:ENST00000356360.9:ENST00000529016.5:ENST00000526961.5:ENST00000530542.1	protein_coding	protein_coding	protein_coding	protein_coding	14	95	2	1.46708	1.7030949999999998	1.93911	0.0272921	0.00339987	0.123904	0.0537228
chr1	61116034	61116133	127730	0	+	0.414141	(0.408,0.44]	chr1	14775	38	EXON_MRNA	EXON_MRNA:INTRON	NFIA	ENSG00000162599.17	ENST00000371191.5:ENST00000664495.1:ENST00000476646.5:ENST00000407417.7:ENST00000479364.1:ENST00000371189.8:ENST00000670151.1:ENST00000664149.1:ENST00000662015.1:ENST00000403491.8:ENST00000371187.7:ENST00000485903.6:ENST00000371185.6:ENST00000371184.6:ENST00000603233.2:ENST00000496712.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	73	2	1.39614	1.702875	2.00961	0.0567929	0.00931007	0.167723	0.0855292
chr20	38428358	38428455	7342239	0	-	0.474227	(0.44,0.476]	chr20	748314	8	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	SNHG17	ENSG00000196756.14	ENST00000654008.2:ENST00000658076.1:ENST00000662982.2:ENST00000456953.7:ENST00000654183.2:ENST00000663540.2:ENST00000651115.2:ENST00000660885.2:ENST00000662213.1:ENST00000665233.2:ENST00000666268.2:ENST00000665735.1:ENST00000660558.2:ENST00000691280.1:ENST00000658488.2:ENST00000688336.1:ENST00000668054.2:ENST00000690441.1:ENST00000655520.2:ENST00000687490.1:ENST00000664626.1:ENST00000658051.1:ENST00000668042.1:ENST00000686971.1:ENST00000663187.1:ENST00000657868.1:ENST00000663534.1:ENST00000658141.1:ENST00000689917.1:ENST00000664073.2:ENST00000653697.1:ENST00000656320.1:ENST00000686814.1:ENST00000417578.7:ENST00000654853.1:ENST00000665440.1:ENST00000436764.7:ENST00000668482.2:ENST00000671249.1:ENST00000655692.1:ENST00000662568.1:ENST00000693250.1:ENST00000691368.1:ENST00000693227.1:ENST00000690361.1:ENST00000670051.1:ENST00000667912.1:ENST00000693665.1:ENST00000665181.1:ENST00000687532.1:ENST00000691386.1:ENST00000693684.1:ENST00000666331.1:ENST00000669480.1:ENST00000658905.1:ENST00000661252.1:ENST00000669137.1:ENST00000688133.1:ENST00000689414.1:ENST00000691314.1:ENST00000669033.1:ENST00000686145.1:ENST00000653938.1:ENST00000663784.1:ENST00000665003.1:ENST00000659400.1:ENST00000653753.1:ENST00000449469.5:ENST00000654389.1:ENST00000656023.1:ENST00000692262.1:ENST00000414142.5:ENST00000670958.1:ENST00000657216.2:ENST00000664636.1:ENST00000657843.1:ENST00000660189.1:ENST00000660064.1:ENST00000423536.6:ENST00000666419.1:ENST00000413755.5	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	55	440	2	1.67317	1.7027700000000001	1.73237	0.00171891	0.00149131	0.0382685	0.035022
chr2	167934404	167934504	1259147	0	-	0.48	(0.476,0.515]	chr2	133340	333	INTRON	INTRON	B3GALT1-AS1	ENSG00000235335.3	ENST00000430546.2:ENST00000657553.1:ENST00000670221.1:ENST00000436982.2	lncRNA	lncRNA	lncRNA	lncRNA	14	113	2	1.30089	1.70274	2.10459	0.04054	0.00302726	0.161534	0.0493883
chr11	118451989	118452089	4872276	0	+	0.41	(0.408,0.44]	chr11	454987	21	INTRON	INTRON	ENSG00000285827:KMT2A	ENSG00000285827.1:ENSG00000118058.24	ENST00000648261.1:ENST00000389506.10:ENST00000534358.8:ENST00000533790.3:ENST00000527869.7:ENST00000649690.2:ENST00000691053.1:ENST00000531904.6:ENST00000649699.1:ENST00000648029.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	50	2	1.58763	1.70261	1.81759	0.0639217	0.0316273	0.177824	0.144405
chr12	45738888	45738988	5122807	0	+	0.41	(0.408,0.44]	chr12	483299	72	INTRON	INTRON	ARID2	ENSG00000189079.17	ENST00000334344.11:ENST00000427628.5:ENST00000426776.5:ENST00000422737.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	50	2	1.58763	1.70261	1.81759	0.0639217	0.0316273	0.177824	0.144405
chr17	30895104	30895199	6591082	0	+	0.294737	(0.28,0.32]	chr17	641038	3	UTR3	UTR3:EXON_MRNA	ATAD5	ENSG00000176208.9	ENST00000321990.5	protein_coding	protein_coding	protein_coding	protein_coding	17	174	2	1.35392	1.7026000000000001	2.05128	0.0394107	0.00217456	0.143072	0.0435108
chr5	54087257	54087357	2618679	0	-	0.51	(0.476,0.515]	chr5	248841	113	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	14	110	2	1.43726	1.70256	1.96786	0.0275476	0.00462407	0.123904	0.062717
chr21	29045772	29045870	7390186	0	+	0.397959	(0.378,0.408]	chr21	753021	18	INTRON	INTRON	USP16	ENSG00000156256.15	ENST00000399975.7:ENST00000334352.8:ENST00000474835.5:ENST00000399976.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	11	89	2	1.39434	1.702525	2.01071	0.0349817	0.0111045	0.149337	0.0876025
chr19	11099922	11100022	7016918	0	+	0.39	(0.378,0.408]	chr19	697423	3	SS3_PROX	SS3_PROX:INTRON	LDLR	ENSG00000130164.14	ENST00000557933.5:ENST00000558518.6:ENST00000545707.5:ENST00000535915.5:ENST00000455727.6:ENST00000557958.1:ENST00000560502.5:ENST00000558013.5:ENST00000252444.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	12	96	2	1.24911	1.702425	2.15574	0.0534282	0.00519611	0.162935	0.0654762
chrX	73844032	73844131	7837964	0	-	0.414141	(0.408,0.44]	chrX	799611	67	EXON_LNCRNA	EXON_LNCRNA:INTRON	XIST	ENSG00000229807.13	ENST00000650627.1:ENST00000434839.3:ENST00000429829.6:ENST00000650366.1:ENST00000648607.1:ENST00000650186.1:ENST00000635841.2:ENST00000650637.1:ENST00000648970.1:ENST00000648991.1:ENST00000666309.1	lncRNA	lncRNA	lncRNA	lncRNA	36	280	2	1.69677	1.7023899999999998	1.70801	0.00402728	0.00179707	0.0553797	0.0392772
chr4	126535318	126535418	2236062	0	-	0.35	(0.32,0.35]	chr4	219023	698	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	9	84	2	1.60297	1.702385	1.8018	0.0647328	0.0103524	0.179192	0.0896588
chr14	49894463	49894562	5715979	0	+	0.393939	(0.378,0.408]	chr14	542803	3	UTR3	UTR3:EXON_MRNA	ARF6	ENSG00000165527.8	ENST00000693319.1:ENST00000298316.7:ENST00000692608.1	protein_coding	protein_coding	protein_coding	protein_coding	35	283	2	1.66878	1.702365	1.73595	0.00517039	0.00161644	0.063153	0.0369204
chr1	31919262	31919361	414243	0	-	0.393939	(0.378,0.408]	chr1	49907	3	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	ENSG00000269967:PTP4A2	ENSG00000269967.1:ENSG00000184007.22	ENST00000602889.1:ENST00000647444.2:ENST00000602725.5:ENST00000649841.1:ENST00000457805.6:ENST00000532001.6:ENST00000528253.3:ENST00000468531.1:ENST00000534796.5:ENST00000532289.1:ENST00000526960.1:ENST00000524384.5:ENST00000528840.1:ENST00000494444.2:ENST00000529477.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:nonsense_mediated_decay:lncRNA:processed_transcript	24	197	2	1.65163	1.70227	1.75291	0.00539695	0.004844	0.0644048	0.0640618
chr2	61513861	61513961	1130974	0	-	0.53	(0.515,0.57]	chr2	121602	4	SS5_PROX	SS5_PROX:INTRON	XPO1	ENSG00000082898.19	ENST00000677110.1:ENST00000676553.1:ENST00000677556.1:ENST00000677814.1:ENST00000676771.1:ENST00000677803.1:ENST00000677239.1:ENST00000678790.1:ENST00000677928.1:ENST00000678182.1:ENST00000677150.1:ENST00000678172.1:ENST00000678360.1:ENST00000678081.1:ENST00000676889.1:ENST00000676783.1:ENST00000679035.1:ENST00000677422.1:ENST00000677417.1:ENST00000677813.1:ENST00000676999.1:ENST00000676667.1:ENST00000678263.1:ENST00000678877.1:ENST00000677933.1:ENST00000680228.1:ENST00000677289.1:ENST00000677190.1:ENST00000401558.7:ENST00000428210.5:ENST00000677290.1:ENST00000677850.1:ENST00000451765.6:ENST00000676789.1:ENST00000678741.1:ENST00000404992.6:ENST00000406957.5:ENST00000443240.5:ENST00000476585.5:ENST00000468259.1:ENST00000420673.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	12	81	2	1.64356	1.702255	1.76095	0.024299	0.00781632	0.12011	0.0788458
chr10	133412120	133412219	4540400	0	+	0.383838	(0.378,0.408]	chr10	419095	90	INTRON	INTRON	MTG1	ENSG00000148824.19	ENST00000477902.6:ENST00000317502.11:ENST00000432508.3:ENST00000460848.5:ENST00000473735.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	52	2	1.68393	1.7021899999999999	1.72045	0.0503034	0.0424671	0.161763	0.156383
chr6	158808909	158809008	3253233	0	-	0.40404	(0.378,0.408]	chr6	302380	192	INTRON	INTRON	EZR	ENSG00000092820.19	ENST00000337147.11:ENST00000367075.4:ENST00000476189.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	52	2	1.68393	1.7021899999999999	1.72045	0.0503034	0.0424671	0.161763	0.156383
chr10	74408077	74408177	4458344	0	+	0.41	(0.408,0.44]	chr10	411580	91	INTRON	INTRON	ADK	ENSG00000156110.15	ENST00000672429.1:ENST00000539909.6:ENST00000286621.7:ENST00000673352.1:ENST00000673310.1:ENST00000672920.1:ENST00000672394.1:ENST00000372734.5:ENST00000673027.1:ENST00000541550.6:ENST00000672604.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	66	2	1.69979	1.70194	1.70409	0.0310346	0.028108	0.137011	0.13151
chr19	19474114	19474214	7036037	0	+	0.44	(0.408,0.44]	chr19	701470	10	INTRON	INTRON	GATAD2A	ENSG00000167491.18	ENST00000360315.7:ENST00000609040.5:ENST00000417582.6:ENST00000683918.1:ENST00000432704.5:ENST00000404158.5:ENST00000429242.7:ENST00000358713.7:ENST00000444839.1:ENST00000418032.3:ENST00000473184.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	66	2	1.69979	1.70194	1.70409	0.0310346	0.028108	0.137011	0.13151
chr19	15300044	15300144	7147081	0	-	0.44	(0.408,0.44]	chr19	721965	197	INTRON	INTRON	BRD4	ENSG00000141867.19	ENST00000679869.1:ENST00000360016.9:ENST00000594841.5:ENST00000597315.5:ENST00000601941.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	73	2	1.31757	1.70189	2.08621	0.0705974	0.00683843	0.184528	0.0748032
chr2	26779482	26779579	715680	0	+	0.474227	(0.44,0.476]	chr2	82657	11	UTR3	UTR3:EXON_MRNA:INTRON	SLC35F6:CENPA	ENSG00000213699.9:ENSG00000115163.15	ENST00000344420.10:ENST00000429494.5:ENST00000475662.5:ENST00000414029.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	74	2	1.40212	1.701885	2.00165	0.0524678	0.0109867	0.178047	0.0873897
chr9	91352195	91352295	4281127	0	-	0.46	(0.44,0.476]	chr9	393807	86	INTRON	INTRON	AUH	ENSG00000148090.12	ENST00000303617.5:ENST00000375731.9:ENST00000478465.5:ENST00000475023.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	90	2	1.34221	1.7018	2.06139	0.0656882	0.00297288	0.181162	0.0501309
chr1	167789220	167789320	248449	0	+	0.33	(0.32,0.35]	chr1	29523	14	UTR3	UTR3:EXON_MRNA	MPZL1	ENSG00000197965.12	ENST00000359523.7:ENST00000392121.7	protein_coding	protein_coding	protein_coding	protein_coding	9	86	2	1.54135	1.701795	1.86224	0.0353776	0.0203914	0.150752	0.11076
chr4	126725946	126726045	2237970	0	-	0.262626	[0,0.28]	chr4	219029	273	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	7	78	2	1.50357	1.701775	1.89998	0.0599553	0.0436989	0.169548	0.162255
chr1	212334224	212334324	308568	0	+	0.27	[0,0.28]	chr1	35591	2	SS5_PROX	SS5_PROX:INTRON	PPP2R5A	ENSG00000066027.12	ENST00000261461.7:ENST00000537030.3:ENST00000498129.6:ENST00000479259.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	102	2	1.40145	1.701645	2.00184	0.0475782	0.0255167	0.169854	0.120269
chr17	75795294	75795393	6676518	0	+	0.414141	(0.408,0.44]	chr17	651915	12	INTRON	INTRON	UNK	ENSG00000132478.10	ENST00000589666.6:ENST00000592629.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	58	2	1.43792	1.7016300000000002	1.96534	0.062843	0.0216499	0.196433	0.11491
chr7	23505071	23505168	3503674	0	-	0.360825	(0.35,0.378]	chr7	326929	4	UTR3	UTR3:EXON_MRNA	TRA2A	ENSG00000164548.12	ENST00000297071.9:ENST00000392502.8:ENST00000538367.6:ENST00000621813.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	30	259	2	1.46466	1.701495	1.93833	0.0144659	8.01904e-4	0.0974207	0.0258804
chr3	5154433	5154533	1353897	0	+	0.47	(0.44,0.476]	chr3	142361	255	INTRON	INTRON	ARL8B	ENSG00000134108.14	ENST00000429403.5:ENST00000256496.8:ENST00000455168.5:ENST00000444332.1:ENST00000419534.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	66	2	1.56391	1.70145	1.83899	0.0589734	0.0187147	0.167915	0.117523
chr13	28142285	28142385	5460866	0	+	0.36	(0.35,0.378]	chr13	523235	28	INTRON	INTRON	PAN3	ENSG00000152520.14	ENST00000503791.5:ENST00000380958.8:ENST00000399613.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	11	88	2	1.44681	1.7012999999999998	1.95579	0.0247768	0.0234538	0.131872	0.11867
chr16	21963130	21963212	6319642	0	+	0.439024	(0.408,0.44]	chr16	604983	4	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	UQCRC2	ENSG00000140740.11	ENST00000268379.9:ENST00000561553.5:ENST00000567757.1:ENST00000563898.5:ENST00000565331.5:ENST00000567597.1:ENST00000563711.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	48	2	1.6546400000000001	1.701195	1.74775	0.0735403	0.0329965	0.190238	0.145298
chr9	4986921	4987021	4095839	0	+	0.4	(0.378,0.408]	chr9	373235	5	INTRON	INTRON	JAK2	ENSG00000096968.14	ENST00000636127.1:ENST00000476574.5:ENST00000381652.4	protein_coding	protein_coding	protein_coding	protein_coding	8	66	2	1.67073	1.7011850000000002	1.73164	0.0441773	0.0219426	0.149888	0.123836
chr7	65752610	65752710	3322747	0	+	0.45	(0.44,0.476]	chr7	308951	3	SS5_PROX	SS5_PROX:INTRON	CCT6P1	ENSG00000228409.7	ENST00000686363.1:ENST00000688735.1:ENST00000689814.1:ENST00000690196.1:ENST00000690636.1:ENST00000687809.1:ENST00000688944.1:ENST00000691983.1:ENST00000688184.1:ENST00000688478.1:ENST00000443108.7:ENST00000686689.1:ENST00000689785.1:ENST00000685316.1:ENST00000442266.3:ENST00000685398.1:ENST00000434500.6	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	6	47	2	1.43625	1.701135	1.96602	0.063142	0.0426807	0.197183	0.148082
chr8	37889590	37889690	3935846	0	-	0.45	(0.44,0.476]	chr8	360576	116	INTRON	INTRON	RAB11FIP1	ENSG00000156675.16	ENST00000330843.9:ENST00000287263.8:ENST00000522727.5	protein_coding	protein_coding	protein_coding	protein_coding	6	47	2	1.43625	1.701135	1.96602	0.063142	0.0426807	0.197183	0.148082
chr1	90030675	90030774	161055	0	+	0.474747	(0.44,0.476]	chr1	17365	31	UTR3	UTR3:EXON_MRNA	ZNF326	ENSG00000162664.17	ENST00000340281.9:ENST00000370447.3	protein_coding	protein_coding	protein_coding	protein_coding	8	64	2	1.42079	1.701125	1.98146	0.0526065	0.0186013	0.160978	0.117264
chr2	131278295	131278394	866164	0	+	0.545455	(0.515,0.57]	chr2	97278	132	INTRON	INTRON	PLEKHB2	ENSG00000115762.17	ENST00000404460.5	protein_coding	protein_coding	protein_coding	protein_coding	39	257	2	1.35804	1.70089	2.04374	0.00836356	4.03385e-4	0.0821897	0.0185763
chr4	126690666	126690766	2237616	0	-	0.56	(0.515,0.57]	chr4	219023	2252	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	12	73	2	1.3819	1.70084	2.01978	0.0249084	0.0165522	0.132323	0.102621
chr22	21790495	21790594	7560611	0	-	0.494949	(0.476,0.515]	chr22	773370	13	INTRON	INTRON	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	29	230	2	1.32516	1.70075	2.07634	0.0221098	3.47849e-4	0.115574	0.0166215
chr8	47899158	47899247	3945120	0	-	0.280899	(0.28,0.32]	chr8	361835	2	INTRON	INTRON	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7	protein_coding	protein_coding	protein_coding	protein_coding	10	107	2	1.67855	1.70071	1.72287	0.0286502	0.0219528	0.139456	0.115201
chr20	63905571	63905671	7301063	0	+	0.49	(0.476,0.515]	chr20	743135	99	INTRON	INTRON	DNAJC5	ENSG00000101152.11	ENST00000360864.9:ENST00000470551.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	73	2	1.4553	1.7007050000000001	1.94611	0.0623645	0.0075261	0.175357	0.0773151
chr17	63863989	63864086	6661668	0	+	0.360825	(0.35,0.378]	chr17	650121	14	EXON_LNCRNA	EXON_LNCRNA	TCAM1P	ENSG00000240280.7	ENST00000478379.5	transcribed_unitary_pseudogene	processed_transcript	transcribed_unitary_pseudogene	processed_transcript	8	74	2	1.69092	1.70069	1.71046	0.0441269	0.0239575	0.162255	0.11951
chr1	32798736	32798834	415978	0	-	0.55102	(0.515,0.57]	chr1	50198	5	INTRON	INTRON	YARS1	ENSG00000134684.13	ENST00000373477.9:ENST00000676297.1:ENST00000674654.1:ENST00000674629.1:ENST00000675785.2:ENST00000481895.6:ENST00000616261.2:ENST00000470377.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	53	2	1.69385	1.700625	1.7074	0.0779432	0.0139144	0.196685	0.10247
chr19	40273249	40273348	7183630	0	-	0.515152	(0.476,0.515]	chr19	726527	26	INTRON	INTRON	AKT2	ENSG00000105221.18	ENST00000392038.7:ENST00000424901.5:ENST00000391844.8:ENST00000584288.5:ENST00000579047.5:ENST00000537834.5:ENST00000487537.3:ENST00000486368.6:ENST00000596634.5:ENST00000452077.5:ENST00000578123.5:ENST00000672890.1:ENST00000423127.5:ENST00000358335.9:ENST00000456441.5:ENST00000583859.5:ENST00000416994.6:ENST00000498350.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	64	2	1.486	1.700625	1.91525	0.0430512	0.0232571	0.148082	0.127416
chr16	84774959	84775059	6410675	0	+	0.41	(0.408,0.44]	chr16	615347	4	SS3_PROX	SS3_PROX:INTRON	USP10	ENSG00000103194.16	ENST00000540269.6:ENST00000219473.12:ENST00000570191.5:ENST00000563048.5:ENST00000569925.1:ENST00000567526.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	64	2	1.69172	1.7005249999999998	1.70933	0.0486032	0.0189186	0.153946	0.118303
chr1	20744106	20744205	389422	0	-	0.373737	(0.35,0.378]	chr1	46510	40	UTR3	UTR3:EXON_MRNA:INTRON	HP1BP3	ENSG00000127483.19	ENST00000438032.6:ENST00000312239.10:ENST00000375003.6:ENST00000488722.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	77	634	2	1.40762	1.700485	1.99335	0.00439073	5.36856e-4	0.060698	0.0214775
chr2	15391951	15392050	1071445	0	-	0.292929	(0.28,0.32]	chr2	114321	83	INTRON	INTRON	NBAS	ENSG00000151779.13	ENST00000281513.10:ENST00000442506.5:ENST00000441755.5	protein_coding	protein_coding	protein_coding	protein_coding	7	73	2	1.60343	1.70041	1.79739	0.0669889	0.0224995	0.183051	0.124921
chr1	33010435	33010533	416580	0	-	0.418367	(0.408,0.44]	chr1	50316	26	UTR3	UTR3:EXON_MRNA	AK2	ENSG00000004455.18	ENST00000373449.7:ENST00000672715.1:ENST00000695598.1:ENST00000550338.6:ENST00000695599.1:ENST00000354858.11:ENST00000695600.1:ENST00000695601.1:ENST00000491241.2:ENST00000695602.1:ENST00000469238.2:ENST00000695603.1:ENST00000695604.1:ENST00000672308.1:ENST00000548033.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	14	112	2	1.50217	1.70038	1.89859	0.022351	0.00624957	0.116768	0.0719778
chr14	65076260	65076355	5912061	0	-	0.315789	(0.28,0.32]	chr14	561539	13	UTR3	UTR3:EXON_MRNA:INTRON	MAX	ENSG00000125952.20	ENST00000341653.6:ENST00000651648.1:ENST00000618858.4:ENST00000358402.8:ENST00000394606.6:ENST00000358664.9:ENST00000555932.5:ENST00000284165.10:ENST00000555419.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	122	2	1.68891	1.7003	1.71169	0.0253232	0.0132814	0.12011	0.100261
chr12	79775336	79775435	5374892	0	-	0.343434	(0.32,0.35]	chr12	512630	19	UTR3	UTR3:EXON_MRNA	PPP1R12A	ENSG00000058272.19	ENST00000261207.9:ENST00000450142.7:ENST00000437004.6	protein_coding	protein_coding	protein_coding	protein_coding	11	104	2	1.24518	1.700205	2.15523	0.0754551	0.00338289	0.194427	0.0534907
chr16	74602761	74602861	6525289	0	-	0.44	(0.408,0.44]	chr16	631842	396	INTRON	INTRON	GLG1	ENSG00000090863.12	ENST00000205061.9:ENST00000422840.7:ENST00000447066.6:ENST00000562090.5:ENST00000567951.5:ENST00000627032.2:ENST00000565260.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	81	2	1.54151	1.700085	1.85866	0.0368312	0.0106944	0.138959	0.091856
chr7	152296371	152296471	3679886	0	-	0.46	(0.44,0.476]	chr7	341623	96	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000684262.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	63	2	1.4962	1.700005	1.90381	0.0392301	0.0260626	0.161534	0.122153
chrX	71301051	71301145	7678194	0	+	0.319149	(0.28,0.32]	chrX	786120	11	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	NONO	ENSG00000147140.17	ENST00000677446.1:ENST00000677274.1:ENST00000535149.5:ENST00000420903.6:ENST00000678335.1:ENST00000678830.1:ENST00000677826.1:ENST00000473525.2:ENST00000678437.1:ENST00000676499.1:ENST00000676495.1:ENST00000678323.1:ENST00000677766.1:ENST00000679267.1:ENST00000677879.1:ENST00000677245.1:ENST00000373841.5:ENST00000276079.13:ENST00000679029.1:ENST00000677218.1:ENST00000676797.1:ENST00000678660.1:ENST00000677014.1:ENST00000678231.1:ENST00000677612.1:ENST00000677977.1:ENST00000490044.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	29	295	2	1.5641	1.7000000000000002	1.8359	0.0070878	0.00434993	0.0754923	0.0581227
chr11	46838432	46838531	4948688	0	-	0.454545	(0.44,0.476]	chr11	463857	117	INTRON	INTRON	CKAP5	ENSG00000175216.15	ENST00000529230.6:ENST00000312055.9:ENST00000525248.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	81	2	1.47433	1.6999849999999999	1.92564	0.0595438	0.00555103	0.16883600000000001	0.0675005
chr21	32375883	32375983	7438641	0	-	0.45	(0.44,0.476]	chr21	758922	4	SS3_PROX	SS3_PROX:INTRON	URB1	ENSG00000142207.7	ENST00000382751.4	protein_coding	protein_coding	protein_coding	protein_coding	5	41	2	1.62896	1.6999849999999999	1.77101	0.0693975	0.0546679	0.184298	0.182674
chr2	61536035	61536118	1131211	0	-	0.277108	[0,0.28]	chr2	121646	3	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	XPO1	ENSG00000082898.19	ENST00000676553.1:ENST00000677556.1:ENST00000677814.1:ENST00000676771.1:ENST00000677803.1:ENST00000677239.1:ENST00000678790.1:ENST00000677928.1:ENST00000678182.1:ENST00000677150.1:ENST00000678172.1:ENST00000678360.1:ENST00000678081.1:ENST00000676889.1:ENST00000676783.1:ENST00000679035.1:ENST00000677422.1:ENST00000677417.1:ENST00000677813.1:ENST00000676999.1:ENST00000401558.7:ENST00000428210.5:ENST00000677290.1:ENST00000677850.1:ENST00000451765.6:ENST00000676789.1:ENST00000678741.1:ENST00000404992.6:ENST00000406957.5:ENST00000443240.5:ENST00000420673.6:ENST00000481214.1:ENST00000449444.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	18	204	2	1.69561	1.69992	1.70423	0.0239554	0.00663339	0.11951	0.0738715
chr17	49051809	49051907	6625172	0	+	0.306122	(0.28,0.32]	chr17	646681	25	UTR3	UTR3:EXON_MRNA	IGF2BP1	ENSG00000159217.10	ENST00000290341.8	protein_coding	protein_coding	protein_coding	protein_coding	17	172	2	1.49995	1.69989	1.89983	0.0166615	0.0079709	0.110511	0.076522
chr1	21716952	21717051	396184	0	-	0.494949	(0.476,0.515]	chr1	47259	11	INTRON	INTRON	USP48	ENSG00000090686.16	ENST00000400301.5:ENST00000308271.14:ENST00000374732.7:ENST00000529637.5:ENST00000471752.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	72	2	1.486	1.69984	1.91368	0.0430512	0.0135123	0.148082	0.101363
chr21	39246506	39246605	7464852	0	-	0.343434	(0.32,0.35]	chr21	760470	76	INTRON	INTRON	BRWD1	ENSG00000185658.14	ENST00000333229.6:ENST00000342449.8:ENST00000446924.5:ENST00000380800.7:ENST00000430093.5:ENST00000445245.5:ENST00000445668.5:ENST00000412604.1:ENST00000455867.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	93	2	1.69015	1.69981	1.70947	0.0328375	0.0159619	0.133816	0.109464
chr1	212868271	212868370	309940	0	+	0.535354	(0.515,0.57]	chr1	35794	34	INTRON	INTRON	FLVCR1	ENSG00000162769.13	ENST00000366971.9:ENST00000419102.1:ENST00000579295.1:ENST00000474693.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	77	2	1.59629	1.69962	1.80295	0.0274344	0.00965183	0.136554	0.0826279
chr1	44755045	44755145	92469	0	+	0.51	(0.476,0.515]	chr1	12289	2	SS5_PROX	SS5_PROX:INTRON	KIF2C	ENSG00000142945.13	ENST00000452259.5:ENST00000493027.5:ENST00000372224.9:ENST00000455186.5:ENST00000372217.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	74	2	1.38299	1.699585	2.01618	0.0361854	0.0180082	0.152746	0.106756
chr10	5890682	5890764	4385181	0	+	0.560976	(0.515,0.57]	chr10	404616	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	FBH1	ENSG00000134452.20	ENST00000397269.7:ENST00000362091.9:ENST00000470089.5:ENST00000462507.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	82	2	1.62009	1.6994850000000001	1.77888	0.0153663	0.0139834	0.10247	0.100447
chr2	169592153	169592252	906548	0	+	0.252525	[0,0.28]	chr2	100017	69	INTRON	INTRON	PPIG	ENSG00000138398.17	ENST00000678088.1:ENST00000677392.1:ENST00000433207.6:ENST00000679324.1:ENST00000414307.6:ENST00000676508.1:ENST00000260970.8:ENST00000678695.1:ENST00000409714.7:ENST00000530152.5:ENST00000677750.1:ENST00000676557.1:ENST00000678721.1:ENST00000462903.6:ENST00000676756.1:ENST00000679107.1:ENST00000678499.1:ENST00000678638.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	62	2	1.55741	1.69944	1.84147	0.0792968	0.0610416	0.199711	0.193277
chr16	70270928	70271016	6510304	0	-	0.465909	(0.44,0.476]	chr16	630579	2	INTRON	INTRON	AARS1	ENSG00000090861.17	ENST00000674963.1:ENST00000675643.1:ENST00000675917.1:ENST00000674691.1:ENST00000261772.13:ENST00000675569.1:ENST00000676209.1:ENST00000676211.1:ENST00000676040.1:ENST00000675953.1:ENST00000675691.1:ENST00000676004.1:ENST00000675270.1:ENST00000675403.1:ENST00000676212.1:ENST00000675045.1:ENST00000675035.1:ENST00000676168.1:ENST00000674652.1:ENST00000675133.1:ENST00000675120.1:ENST00000674811.1:ENST00000674512.1:ENST00000675853.1:ENST00000565361.3:ENST00000676247.1:ENST00000674848.1:ENST00000674962.1:ENST00000675371.1:ENST00000675986.1:ENST00000674768.1:ENST00000675297.1:ENST00000675751.1:ENST00000564359.6:ENST00000675338.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	17	136	2	1.43974	1.699345	1.95895	0.0326581	0.0015768	0.133816	0.036676
chr15	74901742	74901839	6222767	0	-	0.515464	(0.515,0.57]	chr15	594237	19	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	FAM219B	ENSG00000178761.15	ENST00000569524.5:ENST00000357635.10:ENST00000563119.5:ENST00000563671.5:ENST00000566132.5:ENST00000566894.1:ENST00000563069.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	42	2	1.53845	1.69926	1.86007	0.0526611	0.0475376	0.178401	0.153019
chr4	138196321	138196421	2245367	0	-	0.42	(0.408,0.44]	chr4	219484	107	INTRON	INTRON	SLC7A11	ENSG00000151012.13	ENST00000280612.9:ENST00000509248.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	22	152	2	1.51913	1.6992250000000002	1.87932	0.0172104	0.00569494	0.104099	0.0679982
chr4	70915740	70915840	1970639	0	+	0.49	(0.476,0.515]	chr4	197571	128	INTRON	INTRON	MOB1B	ENSG00000173542.9	ENST00000502869.5:ENST00000509041.5:ENST00000309395.7:ENST00000396051.2:ENST00000511449.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	16	118	2	1.46692	1.69908	1.93124	0.0142346	0.00916342	0.103747	0.0812949
chr3	196063908	196064008	1897360	0	-	0.33	(0.32,0.35]	chr3	189930	2	SS5_PROX	SS5_PROX:INTRON	TFRC	ENSG00000072274.13	ENST00000420415.5:ENST00000360110.9:ENST00000392396.7:ENST00000464368.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	47	410	2	1.61184	1.69891	1.78598	0.00378362	0.0023075	0.0541805	0.0441006
chr4	48854685	48854784	1958460	0	+	0.515152	(0.476,0.515]	chr4	196254	18	INTRON	INTRON	OCIAD1	ENSG00000109180.15	ENST00000509122.5:ENST00000505922.6:ENST00000396448.6:ENST00000381473.7:ENST00000264312.12:ENST00000444354.6:ENST00000506801.5:ENST00000503016.5:ENST00000425583.6:ENST00000508293.5:ENST00000513391.2:ENST00000508329.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	63	2	1.32871	1.698845	2.06898	0.0678032	0.0137491	0.184298	0.10247
chr3	47102351	47102450	1680977	0	-	0.353535	(0.35,0.378]	chr3	171580	4	INTRON	INTRON	SETD2	ENSG00000181555.22	ENST00000691544.1:ENST00000638947.2:ENST00000686876.1:ENST00000431180.5:ENST00000409792.4:ENST00000330022.11:ENST00000686773.1:ENST00000685005.1:ENST00000690461.1:ENST00000685505.1:ENST00000692883.1:ENST00000693321.1:ENST00000688290.1:ENST00000691902.1:ENST00000690157.1:ENST00000692362.1:ENST00000445387.5:ENST00000685399.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	64	2	1.46325	1.698785	1.93432	0.0481438	0.0346125	0.153019	0.148144
chr3	19957050	19957150	1376135	0	+	0.45	(0.44,0.476]	chr3	145051	38	INTRON	INTRON	RAB5A	ENSG00000144566.11	ENST00000273047.9:ENST00000412966.5:ENST00000446547.5:ENST00000422242.1:ENST00000469122.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	47	2	1.49356	1.6987299999999999	1.9039	0.0537505	0.0501498	0.180803	0.156383
chr1	207045836	207045936	624895	0	-	0.41	(0.408,0.44]	chr1	74431	21	UTR3	UTR3:EXON_MRNA	YOD1	ENSG00000180667.11	ENST00000367084.1:ENST00000315927.9	protein_coding	protein_coding	protein_coding	protein_coding	14	108	2	1.60291	1.698725	1.79454	0.0157394	0.0106839	0.101453	0.0917964
chr1	160216001	160216097	571121	0	-	0.447917	(0.44,0.476]	chr1	69096	4	UTR3	UTR3:EXON_MRNA	DCAF8	ENSG00000132716.19	ENST00000326837.6:ENST00000368073.7:ENST00000368074.6	protein_coding	protein_coding	protein_coding	protein_coding	13	104	2	1.44767	1.6986400000000001	1.94961	0.0386573	0.00356879	0.142788	0.0548435
chr6	99423416	99423516	3166129	0	-	0.43	(0.408,0.44]	chr6	295334	66	INTRON	INTRON	PNISR	ENSG00000132424.17	ENST00000681615.1:ENST00000369239.10:ENST00000647811.1:ENST00000481229.2:ENST00000679525.1:ENST00000681611.1:ENST00000438806.5:ENST00000478777.5:ENST00000492294.5:ENST00000498075.1:ENST00000466057.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	58	2	1.3378	1.6986350000000001	2.05947	0.050805	0.0333232	0.175989	0.134145
chr8	17934505	17934605	3707842	0	+	0.44	(0.408,0.44]	chr8	343816	4	SS3_PROX	SS3_PROX:INTRON	PCM1	ENSG00000078674.19	ENST00000518930.1:ENST00000325083.13:ENST00000517730.5:ENST00000518537.5:ENST00000518936.5:ENST00000523055.5:ENST00000519253.5:ENST00000524226.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	58	2	1.3378	1.6986350000000001	2.05947	0.050805	0.0333232	0.175989	0.134145
chr9	4857928	4858028	4095529	0	+	0.44	(0.408,0.44]	chr9	373212	80	INTRON	INTRON	RCL1	ENSG00000120158.12	ENST00000381750.9:ENST00000442869.5:ENST00000381730.5:ENST00000381728.5:ENST00000448872.6	protein_coding	protein_coding	protein_coding	protein_coding	8	58	2	1.3378	1.6986350000000001	2.05947	0.050805	0.0333232	0.175989	0.134145
chr17	27297086	27297186	6580561	0	+	0.24	[0,0.28]	chr17	639600	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	WSB1	ENSG00000109046.15	ENST00000581440.5:ENST00000578312.5:ENST00000583742.1:ENST00000467843.6:ENST00000579733.5:ENST00000583193.5:ENST00000262394.7:ENST00000427287.6:ENST00000581185.5:ENST00000584354.1:ENST00000583786.5:ENST00000581089.1:ENST00000348811.6:ENST00000582208.1:ENST00000584114.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	28	322	2	1.58033	1.6985999999999999	1.81687	0.0196694	0.00237749	0.109608	0.0449192
chr20	47219460	47219559	7348119	0	-	0.474747	(0.44,0.476]	chr20	749229	64	INTRON	INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000467200.6:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4	protein_coding	protein_coding	protein_coding	protein_coding	8	63	2	1.44993	1.69858	1.94723	0.045367	0.0227424	0.164236	0.117618
chr7	100622908	100623006	3587140	0	-	0.510204	(0.476,0.515]	chr7	334486	14	INTRON	INTRON	TFR2	ENSG00000106327.13	ENST00000431692.5:ENST00000462107.1:ENST00000223051.8:ENST00000465294.5:ENST00000490084.5:ENST00000462090.5:ENST00000476304.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	66	2	1.53534	1.69858	1.86182	0.0476737	0.0178986	0.170116	0.106365
chr17	29263938	29264038	6747492	0	-	0.37	(0.35,0.378]	chr17	663218	82	UTR3	UTR3:EXON_MRNA	NUFIP2	ENSG00000108256.9	ENST00000225388.9	protein_coding	protein_coding	protein_coding	protein_coding	20	173	2	1.53208	1.69838	1.86468	0.0162834	0.00282021	0.101453	0.0490419
chr16	70388066	70388166	6510949	0	-	0.43	(0.408,0.44]	chr16	630664	3	SS5_PROX	SS5_PROX:INTRON	ST3GAL2	ENSG00000157350.13	ENST00000342907.3:ENST00000393640.8:ENST00000567822.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	73	2	1.58622	1.6981950000000001	1.81017	0.0291748	0.0217525	0.141552	0.11491
chr2	241685115	241685208	1349423	0	-	0.516129	(0.515,0.57]	chr2	141817	1	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	DTYMK	ENSG00000168393.13	ENST00000400770.6:ENST00000305784.7:ENST00000445261.5:ENST00000432348.5:ENST00000420144.1:ENST00000493095.1:ENST00000464603.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	18	120	2	1.4822	1.6979600000000001	1.91372	0.0155985	0.00285138	0.101235	0.0494641
chr11	86005745	86005844	5014196	0	-	0.30303	(0.28,0.32]	chr11	472970	19	INTRON	INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000630913.2:ENST00000528398.5:ENST00000356360.9:ENST00000534412.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	25	255	2	1.43408	1.697865	1.96165	0.0249249	0.00121361	0.12011	0.032247
chr6	143427968	143428066	3242133	0	-	0.418367	(0.408,0.44]	chr6	301124	53	UTR3	UTR3:EXON_MRNA	ADAT2	ENSG00000189007.16	ENST00000237283.9:ENST00000606514.5	protein_coding	protein_coding	protein_coding	protein_coding	8	67	2	1.55035	1.697755	1.84516	0.0455214	0.0193431	0.164236	0.108861
chr6	159740809	159740906	3022525	0	+	0.515464	(0.515,0.57]	chr6	281903	14	INTRON	INTRON	WTAP	ENSG00000146457.16	ENST00000358372.8:ENST00000650096.1:ENST00000614346.4:ENST00000621533.5:ENST00000631126.2:ENST00000337387.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	67	2	1.5318	1.69771	1.86362	0.0258209	0.0164561	0.133676	0.102235
chr4	126676970	126677070	2237479	0	-	0.4	(0.378,0.408]	chr4	219023	2115	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	12	101	2	1.41201	1.6974749999999998	1.98294	0.0550809	0.00311505	0.165463	0.0512673
chr1	26776649	26776745	52007	0	+	0.34375	(0.32,0.35]	chr1	6647	3	INTRON	INTRON	ARID1A	ENSG00000117713.21	ENST00000430799.7:ENST00000324856.13:ENST00000457599.6:ENST00000374152.7:ENST00000636219.1:ENST00000466382.2:ENST00000532781.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	81	2	1.50457	1.697435	1.8903	0.0309203	0.0298043	0.143443	0.129138
chrX	73970874	73970974	7682367	0	+	0.28	[0,0.28]	chrX	786638	25	INTRON	INTRON	JPX	ENSG00000225470.8	ENST00000664637.1:ENST00000639185.1:ENST00000655090.1:ENST00000640437.1:ENST00000660546.1:ENST00000667886.1:ENST00000660840.1:ENST00000657179.1:ENST00000670506.1:ENST00000657910.1:ENST00000662120.1:ENST00000671207.1:ENST00000659254.1:ENST00000656624.1:ENST00000667573.1:ENST00000660856.1:ENST00000660836.1:ENST00000668590.1:ENST00000658649.1:ENST00000414209.6:ENST00000654137.1:ENST00000670994.1:ENST00000602772.5:ENST00000655879.1:ENST00000657372.1:ENST00000657096.1:ENST00000602985.6:ENST00000670685.1:ENST00000670503.1:ENST00000663027.1:ENST00000654995.1:ENST00000602895.6:ENST00000654374.1:ENST00000660087.1:ENST00000665032.1:ENST00000671336.1:ENST00000671476.1:ENST00000667057.1:ENST00000670192.1:ENST00000670464.1:ENST00000665345.1:ENST00000661546.1:ENST00000662543.1:ENST00000602938.6:ENST00000664295.1:ENST00000654005.1:ENST00000669149.1:ENST00000659852.1:ENST00000656509.1:ENST00000602294.6:ENST00000667294.1:ENST00000663470.1:ENST00000602920.6:ENST00000671021.1:ENST00000659849.1:ENST00000667937.1:ENST00000661130.1:ENST00000654196.1:ENST00000655994.1:ENST00000659373.1:ENST00000662239.1:ENST00000670805.1:ENST00000656263.1:ENST00000653069.1:ENST00000657638.1:ENST00000653808.1:ENST00000653929.1:ENST00000653885.1:ENST00000659023.1:ENST00000602546.5:ENST00000659622.1:ENST00000671518.1:ENST00000670408.1	lncRNA	lncRNA	lncRNA	lncRNA	11	129	2	1.40829	1.697395	1.9865	0.0477255	0.0129046	0.153019	0.0990564
chr16	29526169	29526268	6470827	0	-	0.353535	(0.35,0.378]	chr16	625147	203	INTRON	INTRON	ENSG00000288632	ENSG00000288632.1	ENST00000675579.1	lncRNA	lncRNA	lncRNA	lncRNA	33	274	2	1.24461	1.69725	2.14989	0.0242106	4.13393e-4	0.12011	0.0181527
chr1	29196955	29197054	410491	0	-	0.464646	(0.44,0.476]	chr1	49441	3	INTRON	INTRON	MECR	ENSG00000116353.16	ENST00000263702.11:ENST00000373791.7:ENST00000475773.5:ENST00000483435.5:ENST00000473030.5:ENST00000463412.1:ENST00000453185.5:ENST00000478505.6:ENST00000490529.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	15	121	2	1.4709700000000001	1.69718	1.92339	0.021866	0.00506144	0.123836	0.0621733
chr19	57855503	57855603	7106089	0	+	0.46	(0.44,0.476]	chr19	713230	15	INTRON	INTRON	ENSG00000268750:ZNF587	ENSG00000268750.7:ENSG00000198466.12	ENST00000597134.5:ENST00000596498.2:ENST00000593873.6:ENST00000603271.1:ENST00000598031.1:ENST00000604231.1:ENST00000339656.8:ENST00000423137.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	50	2	1.62896	1.6970299999999998	1.7651	0.0546679	0.039388	0.182674	0.143072
chr18	1310339	1310438	6941282	0	-	0.616162	(0.57,1]	chr18	686577	62	INTRON	INTRON	LINC00470	ENSG00000132204.14	ENST00000657423.1:ENST00000657618.1:ENST00000584090.5:ENST00000660947.1:ENST00000669242.1:ENST00000660475.1:ENST00000653775.1:ENST00000661931.1:ENST00000412816.7:ENST00000577867.5:ENST00000584492.5:ENST00000667416.1:ENST00000661852.1:ENST00000657919.1:ENST00000661646.1:ENST00000667776.1:ENST00000654559.1:ENST00000661233.1:ENST00000653213.1:ENST00000659094.1:ENST00000660964.1:ENST00000577403.6:ENST00000660358.1:ENST00000669153.1:ENST00000657121.1:ENST00000655957.1:ENST00000659289.1:ENST00000665133.1:ENST00000671558.1:ENST00000666542.1:ENST00000663512.1:ENST00000582862.6:ENST00000578835.5:ENST00000669312.1:ENST00000581430.5:ENST00000581212.1:ENST00000658090.1	lncRNA	lncRNA	lncRNA	lncRNA	12	41	2	1.1127	1.6968649999999998	2.28103	0.0576542	0.0151554	0.167723	0.108535
chr22	16795580	16795679	7546355	0	-	0.252525	[0,0.28]	chr22	771315	108	INTRON	INTRON	XKR3	ENSG00000172967.8	ENST00000331428.5:ENST00000684488.1	protein_coding	protein_coding	protein_coding	protein_coding	6	73	2	1.59412	1.696825	1.79953	0.0729426	0.0377477	0.189278	0.156608
chr5	54373961	54374061	2354362	0	+	0.36	(0.35,0.378]	chr5	227061	333	INTRON	INTRON	LINC01033	ENSG00000249069.8	ENST00000665899.1:ENST00000653566.1:ENST00000655801.1:ENST00000654906.1:ENST00000667636.1:ENST00000665869.1:ENST00000664079.1:ENST00000659703.1:ENST00000662351.1:ENST00000523194.7:ENST00000665795.1:ENST00000667992.1:ENST00000662022.1:ENST00000657771.1:ENST00000517934.1	lncRNA	lncRNA	lncRNA	lncRNA	7	62	2	1.64283	1.69682	1.75081	0.0427459	0.034896	0.148998	0.148082
chr16	30366462	30366559	6473528	0	-	0.340206	(0.32,0.35]	chr16	625762	10	EXON_MRNA	EXON_MRNA:INTRON	TBC1D10B	ENSG00000169221.14	ENST00000409939.8:ENST00000478158.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	86	2	1.50258	1.69676	1.89094	0.0399817	0.0185636	0.161534	0.108861
chr7	23523329	23523428	3503868	0	-	0.363636	(0.35,0.378]	chr7	326970	5	INTRON	INTRON	TRA2A	ENSG00000164548.12	ENST00000297071.9:ENST00000392502.8:ENST00000538367.6:ENST00000621813.4:ENST00000494255.5:ENST00000474586.5:ENST00000490942.1:ENST00000448549.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	59	2	1.63783	1.69672	1.75561	0.0739399	0.0250627	0.190914	0.133086
chr16	21877246	21877345	6462016	0	-	0.323232	(0.32,0.35]	chr16	623467	111	INTRON	INTRON	NPIPB4	ENSG00000185864.18	ENST00000543449.1:ENST00000538859.1	protein_coding	processed_transcript	protein_coding	processed_transcript	21	195	2	1.6634	1.696585	1.72977	0.010634	0.00496922	0.0861859	0.0646039
chr6	57109221	57109320	2878250	0	+	0.232323	[0,0.28]	chr6	273248	73	UTR3	UTR3:EXON_MRNA:INTRON	ZNF451	ENSG00000112200.17	ENST00000515290.5:ENST00000510483.5:ENST00000357489.7:ENST00000370708.8:ENST00000370702.5:ENST00000444273.6:ENST00000370711.9:ENST00000370706.9:ENST00000491832.6:ENST00000502749.1:ENST00000504603.1:ENST00000509071.5:ENST00000509251.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	93	2	1.53476	1.696545	1.85833	0.0398264	0.0378973	0.161534	0.141283
chr5	168489136	168489236	2540442	0	+	0.52	(0.515,0.57]	chr5	242450	4	SS5_PROX	SS5_PROX:INTRON	RARS1	ENSG00000113643.9	ENST00000524082.5:ENST00000521329.5:ENST00000231572.8:ENST00000522834.5:ENST00000521939.5:ENST00000520013.5:ENST00000519346.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	41	2	1.68552	1.69646	1.7074	0.0779432	0.0292028	0.196685	0.141637
chr15	50684630	50684730	6173261	0	-	0.33	(0.32,0.35]	chr15	588397	212	INTRON	INTRON	TRPM7:ENSG00000288645	ENSG00000092439.16:ENSG00000288645.1	ENST00000646667.1:ENST00000560955.5:ENST00000676296.1	protein_coding	protein_coding	protein_coding	protein_coding	9	85	2	1.40373	1.69641	1.98909	0.0593351	0.0108865	0.168767	0.0923273
chr7	140466410	140466509	3661496	0	-	0.535354	(0.515,0.57]	chr7	339916	58	INTRON	INTRON	MKRN1	ENSG00000133606.11	ENST00000255977.7:ENST00000475010.5:ENST00000495305.5:ENST00000474576.5:ENST00000480552.5:ENST00000496169.5:ENST00000443720.6:ENST00000471104.5:ENST00000467513.5:ENST00000494939.1:ENST00000498535.1:ENST00000473444.1:ENST00000475180.5:ENST00000481705.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	67	2	1.63184	1.6963949999999999	1.76095	0.0545832	0.00781632	0.165292	0.0788458
chr12	49130998	49131098	5321125	0	-	0.64	(0.57,1]	chr12	507046	7	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	TUBA1B	ENSG00000123416.15	ENST00000336023.9:ENST00000332858.10:ENST00000547765.5:ENST00000550367.1:ENST00000551324.5:ENST00000547476.5:ENST00000552984.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	34	2	1.67986	1.6962799999999998	1.7127	0.0496395	0.0180739	0.174685	0.107124
chr2	127803857	127803957	1225812	0	-	0.51	(0.476,0.515]	chr2	130519	325	INTRON	INTRON	WDR33	ENSG00000136709.12	ENST00000322313.9:ENST00000436787.5:ENST00000393006.5:ENST00000409658.7:ENST00000408998.1	protein_coding	protein_coding	protein_coding	protein_coding	14	110	2	1.50914	1.696205	1.88327	0.0212469	0.00672673	0.11322	0.0738715
chr15	68816194	68816292	6214930	0	-	0.428571	(0.408,0.44]	chr15	593028	28	INTRON	INTRON	ANP32A	ENSG00000140350.15	ENST00000465139.6:ENST00000409628.6:ENST00000267918.9:ENST00000560303.1:ENST00000495420.5:ENST00000495764.1:ENST00000483221.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	66	2	1.6546400000000001	1.696085	1.73753	0.0329965	0.0275537	0.145298	0.123904
chr6	37835108	37835208	2857186	0	+	0.4	(0.378,0.408]	chr6	270225	147	INTRON	INTRON	ZFAND3	ENSG00000156639.12	ENST00000287218.9:ENST00000373391.6:ENST00000474522.5	protein_coding	protein_coding	protein_coding	protein_coding	15	117	2	1.39203	1.696075	2.00012	0.022148	0.00748818	0.124017	0.074841
chr15	82539480	82539531	6247425	0	-	0.431373	(0.408,0.44]	chr15	596173	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPS17	ENSG00000182774.13	ENST00000647841.1:ENST00000561157.5:ENST00000558397.1:ENST00000561068.5:ENST00000560612.1:ENST00000560639.1:ENST00000559776.1:ENST00000560229.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:non_stop_decay:nonsense_mediated_decay	13	109	2	1.63421	1.6960600000000001	1.75791	0.0378795	0.00983247	0.157034	0.0838128
chr19	10675874	10675972	7013435	0	+	0.479592	(0.476,0.515]	chr19	696780	40	INTRON	INTRON	ILF3	ENSG00000129351.17	ENST00000449870.5:ENST00000587928.5:ENST00000407004.7:ENST00000589998.5:ENST00000589600.5:ENST00000590009.5:ENST00000587505.5:ENST00000589052.5:ENST00000250241.12:ENST00000590261.5:ENST00000588657.5:ENST00000592763.5:ENST00000587840.5:ENST00000589416.5:ENST00000585835.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	74	2	1.41803	1.6960250000000001	1.97402	0.0320614	0.0206778	0.145026	0.110999
chr17	32374805	32374904	6598243	0	+	0.343434	(0.32,0.35]	chr17	641948	15	UTR3	UTR3:EXON_MRNA:INTRON	ZNF207	ENSG00000010244.19	ENST00000394670.9:ENST00000577908.5:ENST00000581531.5:ENST00000579810.2:ENST00000584416.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	100	2	1.41804	1.69591	1.97378	0.0337299	0.0140469	0.146709	0.0959618
chr21	43758144	43758243	7413566	0	+	0.474747	(0.44,0.476]	chr21	755598	22	UTR3	UTR3:EXON_MRNA	PDXK	ENSG00000160209.19	ENST00000468090.5:ENST00000291565.9:ENST00000467908.1	protein_coding	protein_coding	protein_coding	protein_coding	9	75	2	1.60176	1.69583	1.7899	0.0389597	0.0158205	0.160861	0.101453
chr15	90755930	90756029	6101303	0	+	0.363636	(0.35,0.378]	chr15	580878	6	INTRON	INTRON	BLM	ENSG00000197299.13	ENST00000355112.8:ENST00000648453.1:ENST00000681142.1:ENST00000560509.5:ENST00000559724.5:ENST00000680772.1:ENST00000558599.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	13	115	2	1.66324	1.695685	1.72813	0.016053	0.0132675	0.101453	0.100167
chr16	18077399	18077499	6453407	0	-	0.42	(0.408,0.44]	chr16	621960	736	INTRON	INTRON	ENSG00000259929:ENSG00000260242	ENSG00000259929.5:ENSG00000260242.1	ENST00000567304.1:ENST00000563866.1	lncRNA	lncRNA	lncRNA	lncRNA	6	50	2	1.53812	1.695585	1.85305	0.0543543	0.0501609	0.182243	0.156383
chr22	20571107	20571206	7480008	0	+	0.545455	(0.515,0.57]	chr22	763022	21	INTRON	INTRON	MED15	ENSG00000099917.17	ENST00000433831.5:ENST00000292733.11:ENST00000263205.11:ENST00000406969.5:ENST00000382974.6:ENST00000492381.5:ENST00000478831.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	63	2	1.2325	1.6955799999999999	2.15866	0.0576823	0.0100547	0.188193	0.0848452
chr14	73060005	73060104	5784093	0	+	0.444444	(0.44,0.476]	chr14	547808	8	INTRON	INTRON	RBM25	ENSG00000119707.14	ENST00000527432.5:ENST00000531500.5:ENST00000261973.12:ENST00000532683.5:ENST00000525321.5:ENST00000526754.5:ENST00000525161.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	59	2	1.62896	1.695455	1.76195	0.0546679	0.0252608	0.182674	0.12011
chr11	9256081	9256181	4908981	0	-	0.31	(0.28,0.32]	chr11	460115	107	INTRON	INTRON	DENND5A	ENSG00000184014.9	ENST00000328194.8:ENST00000681203.1:ENST00000530780.2:ENST00000679999.1:ENST00000680470.1:ENST00000680554.1:ENST00000681425.1:ENST00000679568.1:ENST00000679446.1:ENST00000680294.1:ENST00000680742.1:ENST00000680885.1:ENST00000530044.5:ENST00000526707.5:ENST00000532696.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	67	2	1.38068	1.695285	2.00989	0.0590236	0.0427801	0.189982	0.148082
chr9	135935575	135935672	4372298	0	-	0.453608	(0.44,0.476]	chr9	402502	17	INTRON	INTRON	UBAC1	ENSG00000130560.9	ENST00000371756.4:ENST00000489050.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	20	150	2	1.40954	1.695235	1.98093	0.0144746	0.00392739	0.105195	0.0548259
chr9	111934677	111934776	4184844	0	+	0.292929	(0.28,0.32]	chr9	381737	18	UTR3	UTR3:EXON_MRNA	UGCG	ENSG00000148154.10	ENST00000374279.4	protein_coding	protein_coding	protein_coding	protein_coding	24	241	2	1.58209	1.695185	1.80828	0.0162703	0.00265385	0.101453	0.0474945
chr4	39713263	39713362	1953143	0	+	0.383838	(0.378,0.408]	chr4	195630	145	INTRON	INTRON	UBE2K	ENSG00000078140.14	ENST00000510934.5:ENST00000261427.10:ENST00000438068.6:ENST00000513231.5:ENST00000503368.5:ENST00000445950.2:ENST00000510719.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	22	180	2	1.45666	1.69502	1.93338	0.0184639	0.00153638	0.108861	0.03623
chr12	9289633	9289731	5073052	0	+	0.367347	(0.35,0.378]	chr12	479617	9	INTRON	INTRON	ENSG00000111788	ENSG00000111788.10	ENST00000539757.1	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	9	79	2	1.60653	1.69493	1.78333	0.0427748	0.0148511	0.148082	0.106937
chr10	11573841	11573940	4555690	0	-	0.383838	(0.378,0.408]	chr10	420461	1	INTRON	INTRON	USP6NL	ENSG00000148429.15	ENST00000609104.6:ENST00000606752.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	52	2	1.65821	1.694925	1.73164	0.0506302	0.0441773	0.17547	0.149888
chr21	44769977	44770077	7468401	0	-	0.57	(0.515,0.57]	chr21	761136	15	UTR3	UTR3:EXON_MRNA	UBE2G2	ENSG00000184787.19	ENST00000345496.7:ENST00000481546.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	11	73	2	1.40103	1.694915	1.9888	0.0344012	0.00963364	0.136012	0.086971
chr2	171005646	171005746	1262523	0	-	0.44	(0.408,0.44]	chr2	133803	1	SS5_PROX	SS5_PROX:INTRON	TLK1	ENSG00000198586.14	ENST00000431350.7:ENST00000360843.7:ENST00000359766.7:ENST00000521943.5:ENST00000434911.6:ENST00000409443.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	81	2	1.64167	1.6949	1.74813	0.0266976	0.0163902	0.123349	0.109715
chr5	91383167	91383242	2674993	0	-	0.413333	(0.408,0.44]	chr5	253130	2	UTR5	UTR5:EXON_MRNA	ARRDC3	ENSG00000113369.9	ENST00000265138.4	protein_coding	protein_coding	protein_coding	protein_coding	14	84	2	1.07414	1.6948950000000003	2.31565	0.0572282	0.0154718	0.18676	0.100909
chr6	16131742	16131841	2825799	0	+	0.292929	(0.28,0.32]	chr6	265309	6	INTRON	INTRON	MYLIP	ENSG00000007944.15	ENST00000356840.8:ENST00000349606.4	protein_coding	protein_coding	protein_coding	protein_coding	11	110	2	1.32455	1.69489	2.06523	0.0474504	0.0112084	0.169423	0.0880475
chr14	102594624	102594724	5822553	0	+	0.37	(0.35,0.378]	chr14	552490	9	INTRON	INTRON	RCOR1	ENSG00000089902.10	ENST00000262241.7	protein_coding	protein_coding	protein_coding	protein_coding	11	98	2	1.46325	1.69485	1.92645	0.0346125	0.0104433	0.148144	0.0855102
chr11	64774901	64775001	4965270	0	-	0.46	(0.44,0.476]	chr11	467538	10	INTRON	INTRON	SF1	ENSG00000168066.21	ENST00000334944.9:ENST00000227503.13:ENST00000377394.7:ENST00000448404.5:ENST00000377390.8:ENST00000377387.5:ENST00000681407.1:ENST00000433274.6:ENST00000633899.1:ENST00000413951.5:ENST00000432725.1:ENST00000482693.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	54	418	2	1.47958	1.69458	1.90958	0.00598747	3.69116e-4	0.0674604	0.0172871
chr17	15505105	15505203	6731877	0	-	0.346939	(0.32,0.35]	chr17	660291	15	INTRON	INTRON	TVP23C-CDRT4:TVP23C	ENSG00000259024.6:ENSG00000175106.17	ENST00000522212.6:ENST00000557349.5:ENST00000481756.7:ENST00000518506.4:ENST00000225576.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	55	2	1.49965	1.69437	1.88909	0.0553737	0.0542985	0.182243	0.165463
chr2	28920652	28920750	725444	0	+	0.44898	(0.44,0.476]	chr2	83818	23	INTRON	INTRON	WDR43	ENSG00000163811.12	ENST00000407426.8:ENST00000296126.6	protein_coding	protein_coding	protein_coding	protein_coding	13	102	2	1.2812	1.69436	2.10752	0.0432173	0.0045456	0.162255	0.0595107
chr12	116192780	116192880	5424699	0	-	0.54	(0.515,0.57]	chr12	518271	116	INTRON	INTRON	MED13L	ENSG00000123066.9	ENST00000281928.9:ENST00000650226.1:ENST00000548743.2:ENST00000647567.1:ENST00000551197.2	protein_coding	protein_coding	protein_coding	protein_coding	10	67	2	1.22815	1.69433	2.16051	0.0710142	0.0046825	0.185044	0.0631419
chr17	46189819	46189919	6784839	0	-	0.52	(0.515,0.57]	chr17	669245	172	INTRON	INTRON	KANSL1	ENSG00000120071.15	ENST00000574590.6:ENST00000572904.6:ENST00000432791.7:ENST00000575318.6:ENST00000638275.1:ENST00000262419.10:ENST00000648792.1:ENST00000639150.1:ENST00000571698.2:ENST00000639375.1:ENST00000638269.1:ENST00000639356.1:ENST00000574655.6:ENST00000639099.1:ENST00000638902.1:ENST00000576739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	10	67	2	1.22815	1.69433	2.16051	0.0710142	0.0046825	0.185044	0.0631419
chr3	198210368	198210468	1600268	0	+	0.47	(0.44,0.476]	chr3	165908	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	FAM157A	ENSG00000236438.7	ENST00000634862.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	15	117	2	1.40717	1.694325	1.98148	0.0268679	0.00431586	0.123442	0.0599409
chr21	14494001	14494101	7427672	0	-	0.37	(0.35,0.378]	chr21	757722	75	INTRON	INTRON	SAMSN1	ENSG00000155307.19	ENST00000647101.1:ENST00000644288.1:ENST00000400564.5:ENST00000400566.6:ENST00000285670.7:ENST00000619120.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	69	2	1.63783	1.6943199999999998	1.75081	0.0427459	0.0250627	0.148082	0.133086
chr4	62948	63047	1905386	0	+	0.252525	[0,0.28]	chr4	191003	24	INTRON	INTRON	ZNF595	ENSG00000272602.6	ENST00000608255.2:ENST00000609518.5:ENST00000509152.3:ENST00000610261.6	protein_coding	protein_coding	protein_coding	protein_coding	27	312	2	1.45225	1.69428	1.93631	0.0137415	0.00475349	0.10247	0.0601836
chr7	72998084	72998177	3554098	0	-	0.505376	(0.476,0.515]	chr7	330647	12	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO:INTRON	STAG3L3	ENSG00000174353.17	ENST00000436857.5:ENST00000428423.5:ENST00000608210.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	10	81	2	1.57103	1.69422	1.81741	0.0307896	0.0141271	0.143385	0.0959618
chr7	5713718	5713811	3474276	0	-	0.27957	[0,0.28]	chr7	324835	4	INTRON	INTRON	RNF216	ENSG00000011275.19	ENST00000425013.6:ENST00000389902.8:ENST00000389900.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	69	2	1.53147	1.6940650000000002	1.85666	0.0660997	0.0533898	0.181924	0.179876
chr17	28587198	28587298	6744541	0	-	0.53	(0.515,0.57]	chr17	662448	3	INTRON	INTRON	SPAG5	ENSG00000076382.17	ENST00000321765.10:ENST00000584206.1	protein_coding	protein_coding	protein_coding	protein_coding	16	88	2	1.18599	1.69406	2.20213	0.0338993	0.00853365	0.146815	0.0780043
chr18	21593788	21593888	6955046	0	-	0.41	(0.408,0.44]	chr18	688031	3	SS3_PROX	SS3_PROX:INTRON	ESCO1	ENSG00000141446.11	ENST00000269214.10:ENST00000383276.1:ENST00000580101.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	13	99	2	1.65047	1.694	1.73753	0.0275537	0.00868029	0.123904	0.0842798
chr13	106558631	106558731	5648836	0	-	0.39	(0.378,0.408]	chr13	538150	16	EXON_MRNA	EXON_MRNA:INTRON	ARGLU1	ENSG00000134884.15	ENST00000400198.8:ENST00000472226.2:ENST00000375926.5:ENST00000360629.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	31	236	2	1.38515	1.6939899999999999	2.00283	0.00941794	0.00197353	0.0861183	0.040321
chr11	57786139	57786239	4793375	0	+	0.3	(0.28,0.32]	chr11	443721	41	INTRON	INTRON	ENSG00000288534:CTNND1	ENSG00000288534.1:ENSG00000198561.16	ENST00000673781.1:ENST00000673810.1:ENST00000674116.1:ENST00000674060.1:ENST00000524630.5:ENST00000529919.5:ENST00000533189.1:ENST00000682741.1:ENST00000358694.10:ENST00000361332.8:ENST00000361391.10:ENST00000361796.9:ENST00000415361.6:ENST00000426142.6:ENST00000428599.6:ENST00000525902.5:ENST00000526357.5:ENST00000526772.5:ENST00000527467.5:ENST00000528232.5:ENST00000528621.5:ENST00000529526.5:ENST00000529873.5:ENST00000529986.5:ENST00000530094.5:ENST00000530748.5:ENST00000531014.5:ENST00000532245.5:ENST00000532463.5:ENST00000532649.5:ENST00000532787.5:ENST00000532844.5:ENST00000533667.5:ENST00000534579.5:ENST00000399050.10:ENST00000526938.5:ENST00000531007.2:ENST00000674015.1:ENST00000673826.1:ENST00000673683.1:ENST00000674106.1:ENST00000530068.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	119	2	1.67134	1.6938849999999999	1.71643	0.0387947	0.00963226	0.143072	0.086971
chr5	69172351	69172451	2380031	0	+	0.48	(0.476,0.515]	chr5	229163	5	INTRON	INTRON	CCNB1	ENSG00000134057.15	ENST00000506572.5:ENST00000256442.10:ENST00000508407.5:ENST00000505500.5:ENST00000503507.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	57	2	1.27903	1.6938849999999999	2.10874	0.0608608	0.0285608	0.19287	0.12666
chr15	55231684	55231784	6180316	0	-	0.47	(0.44,0.476]	chr15	589130	8	INTRON	INTRON	RAB27A	ENSG00000069974.16	ENST00000336787.6:ENST00000396307.6:ENST00000564609.5:ENST00000569493.5:ENST00000566877.5:ENST00000567380.5:ENST00000565972.5:ENST00000563262.5:ENST00000568803.1	protein_coding	protein_coding	protein_coding	protein_coding	6	47	2	1.54868	1.693835	1.83899	0.0589734	0.0457575	0.167915	0.164677
chr17	28587298	28587398	6744542	0	-	0.52	(0.515,0.57]	chr17	662448	4	INTRON	INTRON	SPAG5	ENSG00000076382.17	ENST00000321765.10:ENST00000584206.1	protein_coding	protein_coding	protein_coding	protein_coding	7	46	2	1.59629	1.693825	1.79136	0.0638444	0.0274344	0.177811	0.136554
chr5	32169849	32169948	2597471	0	-	0.343434	(0.32,0.35]	chr5	246744	256	INTRON	INTRON	GOLPH3	ENSG00000113384.14	ENST00000265070.7:ENST00000503610.5:ENST00000512668.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	19	171	2	1.65376	1.6937799999999998	1.7338	0.0132957	0.00617996	0.094512	0.0713552
chr16	89811201	89811301	6544774	0	-	0.38	(0.378,0.408]	chr16	634615	1	SS3_PROX	SS3_PROX:INTRON	FANCA	ENSG00000187741.16	ENST00000561667.2:ENST00000389301.8:ENST00000568369.6:ENST00000564475.6:ENST00000696275.1:ENST00000696287.1:ENST00000696286.1:ENST00000696291.1:ENST00000696276.1:ENST00000567205.2:ENST00000567284.7:ENST00000696277.1:ENST00000696292.1:ENST00000563767.2:ENST00000567621.6:ENST00000696288.1:ENST00000696293.1:ENST00000566889.5:ENST00000389302.7:ENST00000696294.1:ENST00000696295.1:ENST00000563673.5:ENST00000543736.5:ENST00000534992.5:ENST00000565582.5:ENST00000696296.1:ENST00000563513.1:ENST00000567883.5:ENST00000567943.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	75	2	1.60295	1.693545	1.78414	0.0422859	0.0144669	0.148082	0.105142
chr6	163457551	163457651	3032138	0	+	0.38	(0.378,0.408]	chr6	282577	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	QKI	ENSG00000112531.17	ENST00000361758.8:ENST00000453779.6:ENST00000275262.11:ENST00000392127.6:ENST00000361752.8:ENST00000361195.6:ENST00000424802.7:ENST00000545607.5:ENST00000544436.5:ENST00000537041.5:ENST00000537124.5:ENST00000545346.1:ENST00000544823.5:ENST00000537883.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	75	2	1.60295	1.693545	1.78414	0.0422859	0.0144669	0.148082	0.105142
chr20	63933650	63933749	7301354	0	+	0.464646	(0.44,0.476]	chr20	743167	22	UTR3	UTR3:EXON_MRNA	DNAJC5	ENSG00000101152.11	ENST00000360864.9:ENST00000470551.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	73	2	1.44993	1.69353	1.93713	0.045367	0.0138947	0.164236	0.0955491
chr9	34006142	34006241	4245417	0	-	0.555556	(0.515,0.57]	chr9	390473	69	INTRON	INTRON	UBAP2	ENSG00000137073.24	ENST00000379238.7:ENST00000683659.1:ENST00000682239.1:ENST00000683140.1:ENST00000682209.1:ENST00000681980.1:ENST00000360802.6:ENST00000683252.1:ENST00000684158.1:ENST00000682914.1:ENST00000683717.1:ENST00000379239.9:ENST00000683084.1:ENST00000684754.1:ENST00000629575.2:ENST00000684298.1:ENST00000412543.6:ENST00000480885.5:ENST00000459988.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	40	2	1.44089	1.693395	1.9459	0.0617046	0.0429089	0.193423	0.148082
chr17	22109593	22109693	6578759	0	+	0.55	(0.515,0.57]	chr17	639556	183	INTRON	INTRON	UBBP4	ENSG00000263563.7	ENST00000648259.1:ENST00000688301.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	17	112	2	1.31422	1.6933250000000002	2.07243	0.0300536	0.00172897	0.129138	0.0384338
chr12	4301889	4301988	5067697	0	+	0.282828	(0.28,0.32]	chr12	478308	20	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	CCND2	ENSG00000118971.9	ENST00000676411.1:ENST00000676279.1:ENST00000261254.8:ENST00000675880.1:ENST00000675468.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	26	243	2	1.29229	1.69328	2.09427	0.0202355	0.0029152	0.121364	0.0480155
chr19	47166930	47167029	7084243	0	+	0.454545	(0.44,0.476]	chr19	708792	94	INTRON	INTRON	SAE1	ENSG00000142230.13	ENST00000594144.5:ENST00000413379.7:ENST00000600706.5:ENST00000270225.12:ENST00000598840.5:ENST00000414294.6:ENST00000660039.1:ENST00000664120.1:ENST00000596995.1:ENST00000392776.3:ENST00000659110.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	63	2	1.36075	1.693165	2.02558	0.0389168	0.0363567	0.160783	0.138959
chr8	79989908	79990008	3978567	0	-	0.5	(0.476,0.515]	chr8	364494	311	INTRON	INTRON	MRPS28	ENSG00000147586.10	ENST00000276585.9:ENST00000519386.5:ENST00000521434.5:ENST00000521605.1:ENST00000519120.1:ENST00000520946.1:ENST00000518271.1:ENST00000518371.2:ENST00000522987.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	49	2	1.52615	1.693145	1.86014	0.0739267	0.0277606	0.190914	0.137011
chr19	4457697	4457794	7120271	0	-	0.824742	(0.57,1]	chr19	716342	1	UTR5	UTR5:EXON_MRNA	UBXN6	ENSG00000167671.12	ENST00000301281.11	protein_coding	protein_coding	protein_coding	protein_coding	21	84	2	1.37598	1.6930450000000001	2.01011	0.0184034	7.94102e-4	0.108834	0.0258804
chr21	39299580	39299680	7465402	0	-	0.32	(0.28,0.32]	chr21	760568	6	INTRON	INTRON	BRWD1	ENSG00000185658.14	ENST00000333229.6:ENST00000342449.8:ENST00000380800.7:ENST00000341322.4:ENST00000470108.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	18	176	2	1.68715	1.6929699999999999	1.69879	0.0205261	0.0059017	0.110999	0.0693938
chr11	86056669	86056769	5014719	0	-	0.36	(0.35,0.378]	chr11	473022	247	INTRON	INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000630913.2:ENST00000528398.5:ENST00000356360.9:ENST00000534412.5:ENST00000531558.1:ENST00000531930.5:ENST00000532041.5:ENST00000525162.5:ENST00000528256.1:ENST00000528411.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	16	136	2	1.62581	1.692885	1.75996	0.0228676	0.00468754	0.118056	0.0631419
chr1	26699138	26699238	51202	0	+	0.31	(0.28,0.32]	chr1	6542	12	INTRON	INTRON	ARID1A	ENSG00000117713.21	ENST00000430799.7:ENST00000324856.13:ENST00000637465.1:ENST00000457599.6	protein_coding	protein_coding	protein_coding	protein_coding	7	73	2	1.51776	1.69287	1.86798	0.0528371	0.0335733	0.178899	0.134145
chr1	204534018	204534118	297598	0	+	0.44	(0.408,0.44]	chr1	34289	8	INTRON	INTRON	MDM4	ENSG00000198625.14	ENST00000367183.7:ENST00000391947.6:ENST00000454264.6:ENST00000612738.4:ENST00000614459.4:ENST00000616250.4:ENST00000367182.8:ENST00000463049.5:ENST00000470908.5:ENST00000471783.1:ENST00000367180.5:ENST00000507825.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	42	2	1.53263	1.69284	1.85305	0.0733439	0.0543543	0.190051	0.182243
chr14	31017632	31017732	5857786	0	-	0.41	(0.408,0.44]	chr14	556512	25	INTRON	INTRON	STRN3	ENSG00000196792.12	ENST00000355683.9:ENST00000357479.10:ENST00000555358.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	42	2	1.53263	1.69284	1.85305	0.0733439	0.0543543	0.190051	0.182243
chr5	54063057	54063157	2618436	0	-	0.38	(0.378,0.408]	chr5	248837	149	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	67	2	1.53052	1.692795	1.85507	0.0744544	0.0109894	0.192012	0.0927187
chr1	156745296	156745373	568072	0	-	0.480519	(0.476,0.515]	chr1	68371	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	HDGF	ENSG00000143321.19	ENST00000357325.10:ENST00000368209.9:ENST00000537739.5:ENST00000465180.5:ENST00000482651.5:ENST00000368206.5:ENST00000469145.5:ENST00000471377.5:ENST00000495212.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	63	2	1.69138	1.692755	1.69413	0.0481165	0.0200655	0.153019	0.121043
chr11	65201779	65201878	4804590	0	+	0.515152	(0.476,0.515]	chr11	446277	127	INTRON	INTRON	CAPN1	ENSG00000014216.16	ENST00000533820.5:ENST00000533129.5:ENST00000524773.5:ENST00000279247.11:ENST00000527323.5:ENST00000533079.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	47	2	1.58842	1.692675	1.79693	0.0649782	0.0406588	0.179417	0.161534
chr10	28556738	28556837	4414041	0	+	0.414141	(0.408,0.44]	chr10	407148	183	INTRON	INTRON	WAC	ENSG00000095787.24	ENST00000680735.1:ENST00000375664.8:ENST00000428935.6:ENST00000651598.1:ENST00000628285.3:ENST00000681112.1:ENST00000679570.1:ENST00000375646.5:ENST00000354911.9:ENST00000347934.8:ENST00000420266.6:ENST00000651885.1:ENST00000651441.1:ENST00000679398.1:ENST00000424454.5:ENST00000442148.6:ENST00000448193.5:ENST00000414108.6:ENST00000679428.1:ENST00000439676.5:ENST00000345541.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	16	130	2	1.39095	1.6926549999999998	1.99436	0.046481	0.00130127	0.151299	0.0333932
chr7	158811159	158811259	3689630	0	-	0.19	[0,0.28]	chr7	342421	117	INTRON	INTRON	ESYT2	ENSG00000117868.18	ENST00000251527.10:ENST00000275418.13:ENST00000652148.1:ENST00000483958.5:ENST00000497111.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	93	2	1.43909	1.692615	1.94614	0.0526509	0.0298508	0.178401	0.129138
chr6	167016349	167016449	3033540	0	+	0.47	(0.44,0.476]	chr6	282656	24	INTRON	INTRON	CEP43	ENSG00000213066.13	ENST00000622353.4:ENST00000366847.9:ENST00000349556.4	protein_coding	protein_coding	protein_coding	protein_coding	12	94	2	1.59515	1.692525	1.7899	0.0165796	0.0158205	0.110511	0.101453
chr3	177185283	177185382	1872327	0	-	0.555556	(0.515,0.57]	chr3	187438	140	INTRON	INTRON	TBL1XR1	ENSG00000177565.18	ENST00000457928.7:ENST00000430069.5:ENST00000673974.1:ENST00000352800.10:ENST00000422442.6:ENST00000428970.5:ENST00000424913.5:ENST00000437738.5:ENST00000431421.5:ENST00000635794.1:ENST00000630796.2:ENST00000450267.5:ENST00000630833.2:ENST00000431674.5:ENST00000422066.5:ENST00000443315.5:ENST00000627825.2:ENST00000427349.5:ENST00000413084.5:ENST00000637137.1:ENST00000491623.2:ENST00000637544.1:ENST00000636187.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	35	2	1.67758	1.69249	1.7074	0.0779432	0.0471728	0.196685	0.168737
chr6	36976598	36976698	3089714	0	-	0.52	(0.515,0.57]	chr6	289045	1	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	MTCH1	ENSG00000137409.21	ENST00000695055.1:ENST00000695048.1:ENST00000695049.1:ENST00000695050.1:ENST00000695051.1:ENST00000695052.1:ENST00000695053.1:ENST00000695054.1:ENST00000695046.1:ENST00000695047.1:ENST00000695045.1:ENST00000695044.1:ENST00000695043.1:ENST00000373616.9:ENST00000373627.10:ENST00000695059.1:ENST00000695060.1:ENST00000695058.1:ENST00000695066.1:ENST00000695067.1:ENST00000695068.1:ENST00000695069.1:ENST00000695063.1:ENST00000695064.1:ENST00000695065.1:ENST00000695062.1:ENST00000695072.1:ENST00000695070.1:ENST00000695071.1:ENST00000695073.1:ENST00000695074.1:ENST00000695075.1:ENST00000695076.1:ENST00000418541.6:ENST00000460219.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	35	2	1.67758	1.69249	1.7074	0.0779432	0.0471728	0.196685	0.168737
chr12	25207420	25207519	5297937	0	-	0.555556	(0.515,0.57]	chr12	503893	23	UTR3	UTR3:EXON_MRNA	KRAS	ENSG00000133703.14	ENST00000256078.10:ENST00000311936.8:ENST00000690406.1:ENST00000686877.1:ENST00000685328.1:ENST00000693229.1:ENST00000687356.1:ENST00000692768.1:ENST00000688940.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	18	118	2	1.34012	1.69237	2.04462	0.022457	0.00235401	0.124921	0.0436213
chr17	22100900	22101000	6578672	0	+	0.3	(0.28,0.32]	chr17	639556	96	INTRON	INTRON	UBBP4	ENSG00000263563.7	ENST00000648259.1:ENST00000688301.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	6	60	2	1.51776	1.6923	1.86684	0.0605813	0.0528371	0.178899	0.171122
chr1	30950858	30950955	411724	0	-	0.298969	(0.28,0.32]	chr1	49639	2	INTRON	INTRON	PUM1	ENSG00000134644.16	ENST00000426105.7:ENST00000373747.7:ENST00000257075.9:ENST00000424085.6:ENST00000525843.5:ENST00000440538.6:ENST00000498419.5:ENST00000373741.8:ENST00000373742.6:ENST00000529846.5:ENST00000525997.1:ENST00000527498.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	18	154	2	1.16681	1.692275	2.21774	0.0404768	0.00649055	0.161534	0.0699952
chr21	44775922	44776019	7468464	0	-	0.515464	(0.515,0.57]	chr21	761149	6	INTRON	INTRON	UBE2G2	ENSG00000184787.19	ENST00000345496.7:ENST00000497630.5:ENST00000477954.5:ENST00000491513.5:ENST00000330942.9:ENST00000478200.1:ENST00000497664.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	22	146	2	1.31012	1.692145	2.07417	0.020555	0.00114021	0.122348	0.0307966
chr7	129037756	129037856	3636409	0	-	0.43	(0.408,0.44]	chr7	338142	192	INTRON	INTRON	TNPO3	ENSG00000064419.14	ENST00000627585.2:ENST00000265388.10:ENST00000471234.5:ENST00000482320.5:ENST00000471166.1	protein_coding	protein_coding	protein_coding	protein_coding	10	78	2	1.64062	1.692145	1.74367	0.0557275	0.00902611	0.165463	0.0851577
chr22	20514405	20514504	7479415	0	+	0.373737	(0.35,0.378]	chr22	762951	56	INTRON	INTRON	MED15	ENSG00000099917.17	ENST00000445987.5:ENST00000444094.5:ENST00000414658.5:ENST00000486656.5:ENST00000433831.5:ENST00000432052.5:ENST00000292733.11:ENST00000263205.11:ENST00000477824.5:ENST00000406969.5:ENST00000382974.6:ENST00000441501.5:ENST00000438962.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	93	2	1.16727	1.692065	2.21686	0.078488	0.00414535	0.198025	0.0589266
chr16	21874262	21874362	6461986	0	-	0.5	(0.476,0.515]	chr16	623467	81	INTRON	INTRON	NPIPB4	ENSG00000185864.18	ENST00000543449.1:ENST00000538859.1	protein_coding	processed_transcript	protein_coding	processed_transcript	29	220	2	1.38106	1.69197	2.00288	0.0136831	0.00102643	0.0949306	0.0294094
chr11	66642168	66642265	4811065	0	+	0.350515	(0.35,0.378]	chr11	447893	11	INTRON	INTRON	RBM14-RBM4:RBM4	ENSG00000248643.5:ENSG00000173933.21	ENST00000412278.2:ENST00000421355.1:ENST00000500635.2:ENST00000396053.9:ENST00000408993.6:ENST00000578778.5:ENST00000398692.8:ENST00000310092.12:ENST00000510173.6:ENST00000528039.5:ENST00000506523.6:ENST00000530235.1:ENST00000409406.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	57	2	1.34146	1.69185	2.04224	0.0634598	0.0363073	0.19806000000000001	0.138959
chr19	2119893	2119986	7115214	0	-	0.537634	(0.515,0.57]	chr19	715193	7	INTRON	INTRON	AP3D1	ENSG00000065000.19	ENST00000643116.3:ENST00000345016.9:ENST00000644728.1:ENST00000591631.2:ENST00000643010.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	55	2	1.53845	1.69178	1.84511	0.0475376	0.0167182	0.153019	0.110511
chr6	35364731	35364831	2852200	0	+	0.56	(0.515,0.57]	chr6	269491	172	INTRON	INTRON	PPARD	ENSG00000112033.14	ENST00000418635.6:ENST00000448077.6:ENST00000360694.8:ENST00000311565.4:ENST00000337400.6	protein_coding	protein_coding	protein_coding	protein_coding	12	77	2	1.47892	1.691775	1.90463	0.0202204	0.0141753	0.121353	0.0959618
chr19	55018723	55018823	7100345	0	+	0.46	(0.44,0.476]	chr19	712212	113	INTRON	INTRON	GP6-AS1	ENSG00000267265.6	ENST00000593060.5:ENST00000586845.1	lncRNA	lncRNA	lncRNA	lncRNA	7	57	2	1.43625	1.69174	1.94723	0.063142	0.0227424	0.197183	0.117618
chr1	8608479	8608579	371686	0	-	0.45	(0.44,0.476]	chr1	43521	178	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000400907.6:ENST00000656437.1:ENST00000659924.1:ENST00000480342.5:ENST00000514428.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	63	2	1.30125	1.69168	2.08211	0.0734119	0.0130715	0.190171	0.0996047
chr6	26138632	26138729	2837139	0	+	0.371134	(0.35,0.378]	chr6	266013	7	UTR3	UTR3:EXON_MRNA	H2AC6	ENSG00000180573.10	ENST00000314088.6:ENST00000602637.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	19	162	2	1.57098	1.6916600000000002	1.81234	0.0095378	0.00732383	0.0863913	0.0736684
chr1	96780910	96781009	168542	0	+	0.383838	(0.378,0.408]	chr1	18243	26	INTRON	INTRON	PTBP2	ENSG00000117569.19	ENST00000482253.5:ENST00000675735.1:ENST00000609116.5:ENST00000674951.1:ENST00000675080.1:ENST00000426398.3:ENST00000370197.5:ENST00000370198.5:ENST00000476419.5:ENST00000676292.1:ENST00000676096.1:ENST00000675365.1:ENST00000674579.1:ENST00000675401.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	60	2	1.60295	1.6915300000000002	1.78011	0.0422859	0.0356367	0.151629	0.148082
chr1	46267809	46267909	96415	0	+	0.46	(0.44,0.476]	chr1	12914	2	SS5_PROX	SS5_PROX:INTRON	RAD54L	ENSG00000085999.13	ENST00000442598.5:ENST00000671528.1:ENST00000371975.9:ENST00000655446.1:ENST00000473251.2:ENST00000476687.2:ENST00000664182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	63	2	1.35267	1.6915049999999998	2.03034	0.060678	0.0173569	0.192323	0.104189
chr1	244841127	244841225	672850	0	-	0.326531	(0.32,0.35]	chr1	79586	6	UTR3	UTR3:EXON_MRNA	HNRNPU	ENSG00000153187.20	ENST00000475997.6:ENST00000366527.4:ENST00000649899.1	protein_coding	retained_intron	protein_coding	retained_intron:nonsense_mediated_decay	10	78	2	1.20203	1.691475	2.18092	0.0583213	0.0256608	0.189131	0.120491
chr8	116859046	116859145	4034493	0	-	0.373737	(0.35,0.378]	chr8	368133	1	INTRON	INTRON	RAD21	ENSG00000164754.16	ENST00000297338.7:ENST00000517485.6:ENST00000519837.6:ENST00000522699.2:ENST00000687358.1:ENST00000520992.6:ENST00000517749.2:ENST00000687122.1:ENST00000685972.1:ENST00000687902.1:ENST00000690166.1:ENST00000523547.2:ENST00000686622.1:ENST00000688033.1:ENST00000690189.1:ENST00000689504.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	55	2	1.58862	1.6914099999999999	1.7942	0.0615516	0.0378648	0.193423	0.141212
chr16	18786703	18786795	6456641	0	-	0.434783	(0.408,0.44]	chr16	622515	5	EXON_LNCRNA	EXON_LNCRNA:SS3_PROX:INTRON	RPS15A	ENSG00000134419.15	ENST00000322989.8:ENST00000572008.5:ENST00000563390.5:ENST00000574723.5:ENST00000576008.5:ENST00000562935.5:ENST00000569365.6:ENST00000576436.5:ENST00000575669.1:ENST00000565420.5:ENST00000569083.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	13	109	2	1.6786	1.691345	1.70409	0.028108	0.00953675	0.137011	0.0820275
chr6	7238246	7238345	2799681	0	+	0.535354	(0.515,0.57]	chr6	263786	57	INTRON	INTRON	RREB1	ENSG00000124782.21	ENST00000379933.7:ENST00000379938.7:ENST00000349384.10:ENST00000334984.10	protein_coding	protein_coding	protein_coding	protein_coding	12	85	2	1.54678	1.6911200000000002	1.83546	0.0324987	0.00624864	0.145164	0.0683853
chr10	836302	836402	4541619	0	-	0.33	(0.32,0.35]	chr10	419245	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	LARP4B	ENSG00000107929.16	ENST00000688365.1:ENST00000316157.8:ENST00000690516.1:ENST00000689323.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	76	2	1.53859	1.69112	1.84365	0.0534261	0.0184323	0.162935	0.116493
chr2	167912954	167913054	1258932	0	-	0.33	(0.32,0.35]	chr2	133340	118	INTRON	INTRON	B3GALT1-AS1	ENSG00000235335.3	ENST00000430546.2:ENST00000657553.1:ENST00000670221.1:ENST00000436982.2	lncRNA	lncRNA	lncRNA	lncRNA	8	76	2	1.53859	1.69112	1.84365	0.0534261	0.0184323	0.162935	0.116493
chr14	21249150	21249249	5834963	0	-	0.424242	(0.408,0.44]	chr14	554459	123	INTRON	INTRON	HNRNPC	ENSG00000092199.19	ENST00000336053.10:ENST00000553300.6:ENST00000554969.5:ENST00000556142.5:ENST00000554455.5:ENST00000430246.6:ENST00000553753.5:ENST00000555309.5:ENST00000555914.5:ENST00000557442.5:ENST00000556628.5:ENST00000556513.5:ENST00000555883.5:ENST00000557201.5:ENST00000556897.5:ENST00000420743.6:ENST00000554539.5:ENST00000554383.5:ENST00000555215.5:ENST00000555137.5:ENST00000554891.5:ENST00000556226.5:ENST00000555176.5:ENST00000553614.5:ENST00000557336.1:ENST00000557768.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	20	157	2	1.66061	1.6909299999999998	1.72125	0.0102709	0.00441919	0.0850389	0.061054
chr4	765339	765439	2093251	0	-	0.54	(0.515,0.57]	chr4	206819	21	INTRON	INTRON	ENSG00000249592	ENSG00000249592.7	ENST00000660016.1:ENST00000665579.1:ENST00000503571.5	lncRNA	lncRNA	lncRNA	lncRNA	7	48	2	1.62814	1.6909299999999998	1.75372	0.0386904	0.035203	0.150193	0.14279
chr19	12699881	12699978	7141138	0	-	0.484536	(0.476,0.515]	chr19	720637	8	UTR3	UTR3:EXON_MRNA	TNPO2	ENSG00000105576.16	ENST00000425528.6:ENST00000356861.9:ENST00000450764.6	protein_coding	protein_coding	protein_coding	protein_coding	22	174	2	1.40827	1.690775	1.97328	0.0162302	0.00199211	0.109464	0.0405635
chr19	28426168	28426267	7165404	0	-	0.535354	(0.515,0.57]	chr19	724146	59	INTRON	INTRON	ENSG00000260725	ENSG00000260725.1	ENST00000567877.1	lncRNA	lncRNA	lncRNA	lncRNA	14	92	2	1.13587	1.69074	2.24561	0.0597349	0.00201629	0.189982	0.04086
chr12	122518256	122518338	5442163	0	-	0.487805	(0.476,0.515]	chr12	520574	5	INTRON	INTRON	RSRC2	ENSG00000111011.18	ENST00000331738.12:ENST00000532695.5:ENST00000433877.6:ENST00000527173.6:ENST00000525335.6:ENST00000344591.8:ENST00000528263.1:ENST00000527399.3:ENST00000527796.6:ENST00000526560.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	78	2	1.62997	1.6906949999999998	1.75142	0.0259024	0.018725	0.121522	0.117523
chr1	70230998	70231094	142695	0	+	0.322917	(0.32,0.35]	chr1	15992	5	EXON_MRNA	EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SRSF11	ENSG00000116754.14	ENST00000370951.5:ENST00000687381.1:ENST00000370950.7:ENST00000475204.5:ENST00000370949.2:ENST00000395136.7:ENST00000473950.5:ENST00000469170.5:ENST00000486667.5:ENST00000481648.5:ENST00000463116.1:ENST00000484162.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	17	158	2	1.45118	1.69068	1.93018	0.0302091	0.00272874	0.129709	0.0482648
chr8	111002454	111002554	4027220	0	-	0.35	(0.32,0.35]	chr8	367843	190	INTRON	INTRON	LINC01608	ENSG00000253877.6	ENST00000670392.1:ENST00000658597.1:ENST00000662310.1:ENST00000671489.1:ENST00000668858.1:ENST00000669698.1:ENST00000665803.1:ENST00000658028.1:ENST00000664704.1:ENST00000661954.1:ENST00000661561.1:ENST00000658081.1:ENST00000667145.1:ENST00000658119.1:ENST00000524283.5:ENST00000669893.1:ENST00000660015.1:ENST00000668956.1:ENST00000657323.1:ENST00000663408.1:ENST00000653924.1:ENST00000659834.1:ENST00000658508.1:ENST00000669744.1:ENST00000658733.1:ENST00000657532.1:ENST00000665011.1:ENST00000523557.2	lncRNA	lncRNA	lncRNA	lncRNA	9	82	2	1.69015	1.69061	1.69107	0.0517392	0.0159619	0.159306	0.109464
chr11	118749239	118749338	5045933	0	-	0.242424	[0,0.28]	chr11	475731	16	UTR3	UTR3:EXON_MRNA	DDX6	ENSG00000110367.14	ENST00000534980.7:ENST00000620157.4	protein_coding	protein_coding	protein_coding	protein_coding	6	69	2	1.56918	1.69059	1.812	0.0729149	0.0481076	0.189235	0.171525
chr7	72907476	72907576	3330073	0	+	0.39	(0.378,0.408]	chr7	309565	160	INTRON	INTRON	POM121	ENSG00000196313.13	ENST00000627934.3:ENST00000395270.5	protein_coding	protein_coding	protein_coding	protein_coding	11	88	2	1.52653	1.69054	1.85455	0.0217942	0.0192049	0.123836	0.108861
chr12	108714561	108714661	5406616	0	-	0.52	(0.515,0.57]	chr12	516035	116	INTRON	INTRON	CORO1C	ENSG00000110880.11	ENST00000261401.8:ENST00000541050.5:ENST00000549384.5:ENST00000550542.5:ENST00000552871.5:ENST00000551550.5:ENST00000546571.5:ENST00000551044.1:ENST00000551059.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	42	2	1.63184	1.69052	1.7492	0.0545832	0.0382504	0.165292	0.15832
chr12	122494671	122494770	5441930	0	-	0.545455	(0.515,0.57]	chr12	520516	15	INTRON	INTRON	ZCCHC8	ENSG00000033030.15	ENST00000672018.1:ENST00000633063.3:ENST00000543897.5:ENST00000536306.5:ENST00000536663.5:ENST00000540586.1	protein_coding	protein_coding	protein_coding	protein_coding	6	42	2	1.63184	1.69052	1.7492	0.0545832	0.0382504	0.165292	0.15832
chr7	87878308	87878391	3346691	0	+	0.301205	(0.28,0.32]	chr7	311843	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	DBF4	ENSG00000006634.8	ENST00000413643.5:ENST00000495067.1:ENST00000265728.6:ENST00000431138.5:ENST00000486925.1:ENST00000430279.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	81	2	1.68409	1.690485	1.69688	0.0548665	0.0219684	0.165463	0.123836
chr9	38398272	38398369	4122415	0	+	0.319588	(0.28,0.32]	chr9	375806	11	UTR3	UTR3:EXON_MRNA	ALDH1B1	ENSG00000137124.8	ENST00000377698.4	protein_coding	protein_coding	protein_coding	protein_coding	9	92	2	1.43487	1.69039	1.94591	0.0467227	0.0228482	0.151745	0.125519
chr11	482872	482971	4719233	0	+	0.494949	(0.476,0.515]	chr11	436026	24	INTRON	INTRON	PTDSS2	ENSG00000174915.12	ENST00000532614.5:ENST00000308020.6:ENST00000531520.5:ENST00000526878.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	87	2	1.30826	1.6903899999999998	2.07252	0.0587053	0.00436163	0.167915	0.060356
chr9	19100834	19100933	4236583	0	-	0.424242	(0.408,0.44]	chr9	389435	37	INTRON	INTRON	HAUS6	ENSG00000147874.11	ENST00000380502.8	protein_coding	protein_coding	protein_coding	protein_coding	6	47	2	1.43792	1.690325	1.94273	0.062843	0.0456237	0.196433	0.149888
chr9	36656442	36656541	4117320	0	+	0.424242	(0.408,0.44]	chr9	375312	42	INTRON	INTRON	MELK	ENSG00000165304.8	ENST00000543751.5:ENST00000536860.5:ENST00000541717.4:ENST00000536329.5:ENST00000627766.2:ENST00000298048.7:ENST00000536987.5:ENST00000545008.5:ENST00000626154.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	47	2	1.43792	1.690325	1.94273	0.062843	0.0456237	0.196433	0.149888
chrX	44947383	44947483	7649344	0	+	0.49	(0.476,0.515]	chrX	782726	730	INTRON	INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000675440.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000621147.5:ENST00000475233.1:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	14	106	2	1.56302	1.690215	1.81741	0.0141271	0.0127429	0.0987441	0.0959618
chr22	18550306	18550404	7550853	0	-	0.520408	(0.515,0.57]	chr22	771823	11	INTRON	INTRON	PI4KAP1	ENSG00000274602.5	ENST00000652586.1:ENST00000612500.4:ENST00000611748.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	10	67	2	1.39706	1.690175	1.98329	0.041152	0.0105419	0.161534	0.0860389
chr4	55415762	55415861	1960792	0	+	0.30303	(0.28,0.32]	chr4	196562	6	EXON_LNCRNA	EXON_LNCRNA:INTRON	TMEM165	ENSG00000134851.13	ENST00000381334.10:ENST00000506198.5:ENST00000508404.5:ENST00000511710.1:ENST00000514904.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	88	2	1.47751	1.689805	1.9021	0.0351404	0.0304779	0.149985	0.130699
chr16	29612502	29612602	6471726	0	-	0.54	(0.515,0.57]	chr16	625301	177	INTRON	INTRON	ENSG00000288632	ENSG00000288632.1	ENST00000675579.1	lncRNA	lncRNA	lncRNA	lncRNA	7	48	2	1.68552	1.689795	1.69407	0.0459452	0.0292028	0.149888	0.141637
chr4	2506792	2506892	1912211	0	+	0.52	(0.515,0.57]	chr4	191953	57	INTRON	INTRON	RNF4	ENSG00000063978.16	ENST00000541204.5:ENST00000502316.5:ENST00000509388.5:ENST00000507247.5:ENST00000314289.13:ENST00000511843.5:ENST00000509258.5:ENST00000513284.5:ENST00000511859.5:ENST00000513643.5:ENST00000506706.5:ENST00000511600.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	48	2	1.68552	1.689795	1.69407	0.0459452	0.0292028	0.149888	0.141637
chr1	16622992	16623086	383597	0	-	0.340426	(0.32,0.35]	chr1	45168	5	INTRON	INTRON	CROCCP2	ENSG00000215908.10	ENST00000639481.1:ENST00000639594.1:ENST00000640476.1:ENST00000639456.1:ENST00000412962.4	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	8	76	2	1.57443	1.6896499999999999	1.80487	0.048436	0.0210603	0.153635	0.122559
chr7	139366800	139366900	3437657	0	+	0.41	(0.408,0.44]	chr7	320318	61	INTRON	INTRON	LUC7L2:FMC1-LUC7L2	ENSG00000146963.18:ENSG00000269955.2	ENST00000541170.7:ENST00000541515.3:ENST00000608368.5:ENST00000619796.4:ENST00000354926.9:ENST00000435096.1:ENST00000456182.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	14	93	2	1.11484	1.6896200000000001	2.2644	0.0540395	0.00768371	0.181713	0.0753803
chr1	100046319	100046419	171686	0	+	0.49	(0.476,0.515]	chr1	18596	27	INTRON	INTRON	ENSG00000283761:MFSD14A	ENSG00000283761.1:ENSG00000156875.14	ENST00000638792.1:ENST00000638968.1:ENST00000639040.1:ENST00000639037.1:ENST00000638779.1:ENST00000639171.1:ENST00000640238.1:ENST00000640357.1:ENST00000370152.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	66	2	1.16233	1.68955	2.21677	0.0635535	0.0207026	0.198287	0.110999
chr1	20782522	20782621	389821	0	-	0.393939	(0.378,0.408]	chr1	46582	16	INTRON	INTRON	HP1BP3	ENSG00000127483.19	ENST00000438032.6:ENST00000312239.10:ENST00000424732.5:ENST00000417710.5:ENST00000375000.5:ENST00000437575.5:ENST00000419490.5:ENST00000414993.1:ENST00000443615.1	protein_coding	protein_coding	protein_coding	protein_coding	35	285	2	1.28978	1.689375	2.08897	0.021655400000000002	2.59893e-4	0.11491	0.014326
chr11	62854803	62854902	4961880	0	-	0.414141	(0.408,0.44]	chr11	467083	19	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SNHG1	ENSG00000255717.8	ENST00000689147.1:ENST00000686500.1:ENST00000665371.1:ENST00000687243.1:ENST00000537869.6:ENST00000686081.1:ENST00000686670.1:ENST00000690476.1:ENST00000688102.1:ENST00000691255.1:ENST00000539303.6:ENST00000538654.6:ENST00000540725.6:ENST00000658540.1:ENST00000685229.1:ENST00000686478.1:ENST00000686008.1:ENST00000692887.1:ENST00000691324.1:ENST00000692454.1:ENST00000685577.1:ENST00000693734.1:ENST00000537068.5:ENST00000537925.5:ENST00000541416.6:ENST00000541578.6:ENST00000537024.6:ENST00000686740.1:ENST00000663967.1:ENST00000670323.1:ENST00000660547.1:ENST00000689664.1:ENST00000690542.1:ENST00000539921.7:ENST00000687029.1:ENST00000661616.1:ENST00000670469.1:ENST00000664307.1:ENST00000665512.1:ENST00000656268.1:ENST00000535689.6:ENST00000663237.1:ENST00000544550.6:ENST00000660730.1:ENST00000660960.1:ENST00000662229.1:ENST00000670729.1:ENST00000655919.1:ENST00000671236.1:ENST00000667655.1:ENST00000653690.1:ENST00000661936.1:ENST00000544983.2:ENST00000535076.6:ENST00000656240.1:ENST00000539975.5:ENST00000656589.1:ENST00000545920.2:ENST00000537965.6:ENST00000670502.1:ENST00000662400.1:ENST00000663092.1:ENST00000656241.1:ENST00000652879.1:ENST00000668309.1:ENST00000545440.5:ENST00000542112.5:ENST00000541615.5:ENST00000538266.5:ENST00000545688.5:ENST00000540865.5:ENST00000545308.5:ENST00000540904.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	11	85	2	1.43341	1.6893600000000002	1.94531	0.0302713	0.0136489	0.143025	0.0949306
chr2	38339181	38339281	1098961	0	-	0.44	(0.408,0.44]	chr2	117856	198	INTRON	INTRON	ATL2	ENSG00000119787.14	ENST00000378954.9:ENST00000406122.5:ENST00000405384.6:ENST00000402054.5:ENST00000419554.6:ENST00000651368.1:ENST00000452935.6:ENST00000449130.5:ENST00000443098.5:ENST00000456736.5:ENST00000474535.2:ENST00000472097.1:ENST00000451483.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	65	2	1.44993	1.68932	1.92871	0.0638951	0.0127189	0.177824	0.0986242
chr9	112325849	112325949	4317883	0	-	0.55	(0.515,0.57]	chr9	397079	276	INTRON	INTRON	PTBP3	ENSG00000119314.16	ENST00000334318.10:ENST00000458258.5:ENST00000374257.6:ENST00000374255.6:ENST00000343327.6:ENST00000487997.1:ENST00000210227.4:ENST00000450374.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	80	2	1.48296	1.689225	1.89549	0.0243813	0.0094473	0.131358	0.0817766
chr5	37360821	37360920	2602664	0	-	0.40404	(0.378,0.408]	chr5	247515	23	INTRON	INTRON	NUP155	ENSG00000113569.16	ENST00000231498.8:ENST00000381843.6:ENST00000513532.1	protein_coding	protein_coding	protein_coding	protein_coding	9	76	2	1.45934	1.6892	1.91906	0.0442931	0.0153989	0.162302	0.100621
chr1	167790019	167790119	248457	0	+	0.43	(0.408,0.44]	chr1	29523	22	UTR3	UTR3:EXON_MRNA	MPZL1	ENSG00000197965.12	ENST00000359523.7:ENST00000392121.7	protein_coding	protein_coding	protein_coding	protein_coding	5	41	2	1.6306	1.689175	1.74775	0.0735403	0.0544158	0.190238	0.182272
chr17	47589425	47589524	6622187	0	+	0.414141	(0.408,0.44]	chr17	645901	17	INTRON	INTRON	NPEPPS	ENSG00000141279.17	ENST00000525037.5:ENST00000677710.1:ENST00000530173.6:ENST00000677226.1:ENST00000322157.9:ENST00000678461.1:ENST00000532729.6:ENST00000677120.1:ENST00000678909.1:ENST00000678496.1:ENST00000678262.1:ENST00000677370.1:ENST00000677664.1:ENST00000527298.5:ENST00000602788.5:ENST00000676492.1:ENST00000534814.5:ENST00000527964.5:ENST00000530514.6:ENST00000527360.1:ENST00000533538.5:ENST00000525021.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	41	2	1.6306	1.689175	1.74775	0.0735403	0.0544158	0.190238	0.182272
chr17	47651776	47651876	6622594	0	+	0.41	(0.408,0.44]	chr17	645999	4	SS5_PROX	SS5_PROX:INTRON	KPNB1	ENSG00000108424.11	ENST00000535458.6:ENST00000583648.6:ENST00000290158.9:ENST00000577918.5:ENST00000577875.5:ENST00000540627.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	41	2	1.6306	1.689175	1.74775	0.0735403	0.0544158	0.190238	0.182272
chr11	86063857	86063957	5014791	0	-	0.29	(0.28,0.32]	chr11	473022	319	INTRON	INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000630913.2:ENST00000528398.5:ENST00000356360.9:ENST00000534412.5:ENST00000531558.1:ENST00000531930.5:ENST00000532041.5:ENST00000525162.5:ENST00000528256.1:ENST00000528411.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	15	150	2	1.65802	1.689065	1.72011	0.0234847	0.00787291	0.118716	0.0793693
chr1	70221839	70221939	142593	0	+	0.6	(0.57,1]	chr1	15970	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	SRSF11	ENSG00000116754.14	ENST00000370951.5:ENST00000463877.1:ENST00000687381.1:ENST00000370950.7:ENST00000475204.5:ENST00000370949.2:ENST00000395136.7:ENST00000473950.5:ENST00000469170.5:ENST00000486667.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	21	76	2	1.2522200000000001	1.6890300000000003	2.12584	0.0206758	0.00173926	0.122348	0.0375363
chr16	85557861	85557961	6415410	0	+	0.37	(0.35,0.378]	chr16	615470	11	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	27	236	2	1.52025	1.68886	1.85747	0.00854584	0.00284743	0.0836845	0.047439
chr18	682550	682647	6939460	0	-	0.525773	(0.515,0.57]	chr18	686388	35	INTRON	INTRON	ENOSF1	ENSG00000132199.20	ENST00000647584.2:ENST00000383578.7:ENST00000584259.6:ENST00000340116.12:ENST00000581475.5:ENST00000582745.5:ENST00000580982.5:ENST00000585128.6:ENST00000583973.5:ENST00000581928.5:ENST00000584453.5:ENST00000584706.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	12	79	2	1.43515	1.688815	1.94248	0.0254996	0.0115668	0.12024	0.0962115
chr1	20743417	20743515	389415	0	-	0.44898	(0.44,0.476]	chr1	46510	33	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	HP1BP3	ENSG00000127483.19	ENST00000438032.6:ENST00000312239.10:ENST00000375003.6:ENST00000488722.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	31	219	2	1.27106	1.6887949999999998	2.10653	0.0149256	0.00130101	0.107398	0.0331067
chr1	16640666	16640766	383787	0	-	0.52	(0.515,0.57]	chr1	45226	51	INTRON	INTRON	CROCCP2	ENSG00000215908.10	ENST00000639456.1:ENST00000412962.4:ENST00000635081.1:ENST00000362058.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	14	93	2	1.54503	1.6886549999999998	1.83228	0.0154936	0.00854719	0.109024	0.0780217
chr20	50615501	50615601	7354676	0	-	0.41	(0.408,0.44]	chr20	750044	1	SS5_PROX	SS5_PROX:INTRON	RIPOR3	ENSG00000042062.13	ENST00000327979.8:ENST00000045083.6:ENST00000462493.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	79	2	1.29079	1.6885	2.08621	0.0625053	0.00683843	0.175709	0.0748032
chr6	124967302	124967401	2951520	0	+	0.313131	(0.28,0.32]	chr6	277668	35	INTRON	INTRON	RNF217	ENSG00000146373.17	ENST00000521654.7:ENST00000560949.5:ENST00000519971.1:ENST00000519565.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	60	2	1.56118	1.6885	1.81582	0.068122	0.0467152	0.184298	0.1676
chr2	61512979	61513076	1130965	0	-	0.319588	(0.28,0.32]	chr2	121601	17	INTRON	INTRON	XPO1	ENSG00000082898.19	ENST00000677110.1:ENST00000676553.1:ENST00000677556.1:ENST00000677814.1:ENST00000676771.1:ENST00000677803.1:ENST00000677239.1:ENST00000678790.1:ENST00000677928.1:ENST00000678182.1:ENST00000677150.1:ENST00000678172.1:ENST00000678360.1:ENST00000678081.1:ENST00000676889.1:ENST00000676783.1:ENST00000679035.1:ENST00000677422.1:ENST00000677417.1:ENST00000677813.1:ENST00000676999.1:ENST00000676667.1:ENST00000678263.1:ENST00000678877.1:ENST00000677933.1:ENST00000680228.1:ENST00000677289.1:ENST00000677190.1:ENST00000401558.7:ENST00000428210.5:ENST00000677290.1:ENST00000677850.1:ENST00000451765.6:ENST00000676789.1:ENST00000678741.1:ENST00000404992.6:ENST00000406957.5:ENST00000443240.5:ENST00000476585.5:ENST00000468259.1:ENST00000420673.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	102	2	1.54521	1.68842	1.83163	0.0548272	0.00983832	0.165463	0.0877296
chr5	111498798	111498897	2702657	0	-	0.282828	(0.28,0.32]	chr5	254388	29	UTR3	UTR3:EXON_MRNA	STARD4	ENSG00000164211.13	ENST00000296632.8:ENST00000512160.5	protein_coding	protein_coding	protein_coding	protein_coding	20	190	2	1.59971	1.6883650000000001	1.77702	0.0157299	0.00710697	0.101453	0.0756118
chr9	123232641	123232741	4340121	0	-	0.32	(0.28,0.32]	chr9	398957	189	INTRON	INTRON	STRBP	ENSG00000165209.19	ENST00000348403.10:ENST00000360998.3:ENST00000407982.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	101	2	1.50806	1.68832	1.86858	0.0317995	0.0214814	0.14477	0.114341
chr11	85977769	85977869	5013901	0	-	0.46	(0.44,0.476]	chr11	472919	3	SS5_PROX	SS5_PROX:INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000530692.5:ENST00000630913.2:ENST00000529760.5:ENST00000528398.5:ENST00000532603.5:ENST00000356360.9:ENST00000529016.5:ENST00000526961.5:ENST00000526907.1:ENST00000530542.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	26	193	2	1.3108	1.688095	2.06539	0.0162202	0.00159849	0.109464	0.0364932
chr3	194425341	194425435	1890554	0	-	0.37234	(0.35,0.378]	chr3	189117	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ATP13A3	ENSG00000133657.17	ENST00000687055.1:ENST00000645538.1:ENST00000645319.2:ENST00000690810.1:ENST00000429136.7:ENST00000645621.1:ENST00000685123.1:ENST00000642744.2:ENST00000439040.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	14	118	2	1.6622	1.688	1.7138	0.0263261	0.00695714	0.122221	0.0754576
chr2	85544620	85544715	821623	0	+	0.4	(0.378,0.408]	chr2	91572	10	UTR3	UTR3:EXON_MRNA	MAT2A	ENSG00000168906.13	ENST00000306434.8	protein_coding	protein_coding	protein_coding	protein_coding	57	460	2	1.67398	1.68787	1.70176	0.00229421	0.00136936	0.0428247	0.0340241
chr3	15793325	15793425	1623775	0	-	0.36	(0.35,0.378]	chr3	168013	113	INTRON	INTRON	ANKRD28	ENSG00000206560.12	ENST00000399451.6:ENST00000624145.3:ENST00000683139.1:ENST00000412318.5:ENST00000497037.5:ENST00000451422.1:ENST00000498524.5:ENST00000439830.5:ENST00000461696.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	51	2	1.4414	1.6878600000000001	1.93432	0.0629423	0.0481438	0.196658	0.153019
chr7	10708212	10708312	3483862	0	-	0.37	(0.35,0.378]	chr7	325772	1463	INTRON	INTRON	MGC4859	ENSG00000283117.1	ENST00000634803.1	lncRNA	lncRNA	lncRNA	lncRNA	6	51	2	1.4414	1.6878600000000001	1.93432	0.0629423	0.0481438	0.196658	0.153019
chr8	129557738	129557838	4060864	0	-	0.25	[0,0.28]	chr8	369672	6	INTRON	INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1:ENST00000676273.1:ENST00000667643.1:ENST00000668791.1:ENST00000663716.1:ENST00000663572.1:ENST00000676148.1:ENST00000667962.1:ENST00000674877.1:ENST00000675316.1:ENST00000674656.1:ENST00000446592.7:ENST00000667341.1:ENST00000675186.1:ENST00000652971.1:ENST00000661447.1:ENST00000674863.1:ENST00000675498.1:ENST00000675527.1:ENST00000676108.1:ENST00000657647.1:ENST00000675589.1:ENST00000675913.1:ENST00000675109.1:ENST00000671632.1:ENST00000671311.1:ENST00000676099.1:ENST00000660652.1:ENST00000675522.1:ENST00000675044.1:ENST00000675435.1:ENST00000674639.1:ENST00000676069.1:ENST00000675532.1:ENST00000674762.1:ENST00000523151.6:ENST00000675948.1:ENST00000665364.1:ENST00000657251.1:ENST00000675166.1:ENST00000674883.1:ENST00000675867.1:ENST00000674580.1:ENST00000675393.1:ENST00000520048.1:ENST00000674906.1:ENST00000676030.1:ENST00000670588.1:ENST00000675072.1:ENST00000664936.1:ENST00000652914.1:ENST00000657069.1:ENST00000674882.1	lncRNA	lncRNA	lncRNA	lncRNA	7	83	2	1.67675	1.68785	1.69895	0.0568939	0.0352695	0.167723	0.150332
chr1	51868803	51868903	455198	0	-	0.43	(0.408,0.44]	chr1	54631	60	INTRON	INTRON	NRDC	ENSG00000078618.23	ENST00000354831.11:ENST00000539524.5:ENST00000352171.12:ENST00000491410.1:ENST00000468722.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	57	2	1.53263	1.6878199999999999	1.84301	0.0733439	0.0174311	0.190051	0.112689
chr12	120554072	120554144	5235965	0	+	0.430556	(0.408,0.44]	chr12	496874	2	INTRON	INTRON	RNF10	ENSG00000022840.17	ENST00000325954.9:ENST00000542438.1:ENST00000538796.5:ENST00000413266.6:ENST00000536869.5:ENST00000543578.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	57	2	1.53263	1.6878199999999999	1.84301	0.0733439	0.0174311	0.190051	0.112689
chr9	135943464	135943561	4372381	0	-	0.43299	(0.408,0.44]	chr9	402520	8	INTRON	INTRON	UBAC1	ENSG00000130560.9	ENST00000371756.4:ENST00000489050.5:ENST00000465873.5:ENST00000471163.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	57	2	1.53263	1.6878199999999999	1.84301	0.0733439	0.0174311	0.190051	0.112689
chr7	101826173	101826273	3366450	0	+	0.4	(0.378,0.408]	chr7	315215	68	INTRON	INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000497815.5:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000607092.1:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000558469.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	16	132	2	1.32474	1.68777	2.0508	0.0421106	0.00164553	0.148082	0.0374638
chr6	53324761	53324861	3107947	0	-	0.34	(0.32,0.35]	chr6	291049	287	INTRON	INTRON	ELOVL5	ENSG00000012660.14	ENST00000370918.8:ENST00000542638.5:ENST00000304434.11:ENST00000485336.5:ENST00000465983.5:ENST00000486973.1:ENST00000370913.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	62	2	1.54135	1.6877550000000001	1.83416	0.0631198	0.0353776	0.176946	0.150752
chrX	71418027	71418127	7678765	0	+	0.29	(0.28,0.32]	chrX	786274	14	INTRON	INTRON	TAF1	ENSG00000147133.17	ENST00000683202.1:ENST00000373790.9:ENST00000423759.6:ENST00000683782.1:ENST00000683668.1:ENST00000276072.9:ENST00000373775.8:ENST00000485087.6:ENST00000437147.8:ENST00000683358.1:ENST00000682124.1:ENST00000461764.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	20	193	2	1.44578	1.68771	1.92964	0.0150519	0.00710508	0.108126	0.0723634
chr1	29063781	29063881	60467	0	+	0.29	(0.28,0.32]	chr1	7726	29	INTRON	INTRON	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000647918.1:ENST00000646800.1:ENST00000644342.1:ENST00000646189.1:ENST00000482464.6:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000646260.1:ENST00000373798.5:ENST00000644600.1:ENST00000649674.1:ENST00000643173.1:ENST00000343067.9:ENST00000644780.1:ENST00000650265.1:ENST00000648181.1:ENST00000643604.1:ENST00000648891.1:ENST00000373797.2:ENST00000349460.9:ENST00000645184.1:ENST00000645111.1:ENST00000643302.1:ENST00000642643.1:ENST00000636666.1:ENST00000644848.1:ENST00000644470.1:ENST00000646871.1:ENST00000488277.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	15	144	2	1.38405	1.687685	1.99132	0.0258452	0.009828	0.133676	0.0838128
chr11	9255981	9256081	4908980	0	-	0.41	(0.408,0.44]	chr11	460115	106	INTRON	INTRON	DENND5A	ENSG00000184014.9	ENST00000328194.8:ENST00000681203.1:ENST00000530780.2:ENST00000679999.1:ENST00000680470.1:ENST00000680554.1:ENST00000681425.1:ENST00000679568.1:ENST00000679446.1:ENST00000680294.1:ENST00000680742.1:ENST00000680885.1:ENST00000530044.5:ENST00000526707.5:ENST00000532696.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	63	2	1.58622	1.6875149999999999	1.78881	0.0370259	0.0291748	0.141552	0.139194
chr9	91945008	91945108	4285216	0	-	0.44	(0.408,0.44]	chr9	393926	207	INTRON	INTRON	ROR2	ENSG00000169071.15	ENST00000375715.5:ENST00000375708.4:ENST00000495386.5:ENST00000546883.1:ENST00000476440.1:ENST00000493846.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	57	2	1.49523	1.6875	1.87977	0.0534846	0.0282738	0.180041	0.125825
chr4	183700945	183701039	2086605	0	+	0.489362	(0.476,0.515]	chr4	206269	2	EXON_MRNA	EXON_MRNA:INTRON	TRAPPC11	ENSG00000168538.16	ENST00000357207.8:ENST00000334690.11:ENST00000505676.5:ENST00000512476.1:ENST00000511955.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	56	2	1.53534	1.687475	1.83961	0.0476737	0.0314489	0.170116	0.13151
chr2	107730146	107730246	1205851	0	-	0.45	(0.44,0.476]	chr2	128532	125	INTRON	INTRON	LINC01885:ENSG00000286769	ENSG00000237880.2:ENSG00000286769.1	ENST00000654481.1:ENST00000669817.1	lncRNA	lncRNA	lncRNA	lncRNA	14	113	2	1.53197	1.68744	1.84291	0.0211313	0.00713609	0.122929	0.0723634
chr7	75462708	75462808	3558694	0	-	0.41	(0.408,0.44]	chr7	331545	201	INTRON	INTRON	POM121C	ENSG00000272391.6	ENST00000615331.5:ENST00000398379.2	protein_coding	protein_coding	protein_coding	protein_coding	8	63	2	1.45162	1.687405	1.92319	0.0451203	0.0247322	0.163518	0.12011
chr12	55780593	55780692	5332450	0	-	0.444444	(0.44,0.476]	chr12	509126	196	INTRON	INTRON	SARNP	ENSG00000205323.9	ENST00000546604.5:ENST00000552884.5:ENST00000336133.8:ENST00000552080.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	14	106	2	1.36535	1.6872850000000001	2.00922	0.0277582	0.0068301	0.137011	0.0713163
chr5	71657345	71657442	2385560	0	+	0.43299	(0.408,0.44]	chr5	230208	6	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	MCCC2	ENSG00000131844.17	ENST00000682499.1:ENST00000682214.1:ENST00000682045.1:ENST00000683789.1:ENST00000681968.1:ENST00000682541.1:ENST00000682727.1:ENST00000683098.1:ENST00000683258.1:ENST00000684254.1:ENST00000683882.1:ENST00000684024.1:ENST00000683403.1:ENST00000682687.1:ENST00000682876.1:ENST00000683429.1:ENST00000340941.11:ENST00000683339.1:ENST00000683847.1:ENST00000684530.1:ENST00000681991.1:ENST00000682667.1:ENST00000684686.1:ENST00000684474.1:ENST00000682231.1:ENST00000682640.1:ENST00000682438.1:ENST00000684132.1:ENST00000684473.1:ENST00000682175.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	67	2	1.49523	1.687275	1.87932	0.0534846	0.0172104	0.180041	0.104099
chr4	39705976	39706076	1953070	0	+	0.56	(0.515,0.57]	chr4	195630	72	INTRON	INTRON	UBE2K	ENSG00000078140.14	ENST00000510934.5:ENST00000261427.10:ENST00000438068.6:ENST00000513231.5:ENST00000503368.5:ENST00000445950.2:ENST00000510719.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	15	95	2	1.03423	1.68717	2.34011	0.0771094	0.00106662	0.196285	0.0300133
chr1	52871245	52871343	105198	0	+	0.367347	(0.35,0.378]	chr1	13760	31	INTRON	INTRON	ZYG11A	ENSG00000203995.10	ENST00000371532.5:ENST00000612017.4:ENST00000371528.2	protein_coding	protein_coding	protein_coding	protein_coding	16	138	2	1.53845	1.68714	1.83583	0.0210486	0.00495196	0.112501	0.0646039
chr15	92901275	92901337	6103697	0	+	0.370968	(0.35,0.378]	chr15	581386	1	CDS_SOLITARY	CDS_SOLITARY:CDS_START:CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	ENSG00000279765:CHD2	ENSG00000279765.3:ENSG00000173575.22	ENST00000629685.2:ENST00000630790.1:ENST00000626874.2:ENST00000627622.1:ENST00000394196.9:ENST00000635856.1:ENST00000420239.7:ENST00000628375.2:ENST00000629346.2:ENST00000625990.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	18	151	2	1.55204	1.68704	1.82204	0.0103636	0.00874368	0.0897465	0.0788605
chr17	82467184	82467282	6692350	0	+	0.510204	(0.476,0.515]	chr17	654561	24	INTRON	INTRON	NARF	ENSG00000141562.19	ENST00000579198.5:ENST00000390006.8:ENST00000583181.5:ENST00000584192.5:ENST00000580296.5:ENST00000345415.11:ENST00000581202.5:ENST00000374611.9:ENST00000457415.7:ENST00000581795.5:ENST00000584411.5:ENST00000577812.5:ENST00000581743.5:ENST00000577432.5:ENST00000582907.5:ENST00000309794.16:ENST00000578082.5:ENST00000580748.1:ENST00000577410.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	36	278	2	1.61009	1.686965	1.76384	0.00336433	0.00242487	0.0532521	0.0444077
chr1	954823	954923	358386	0	-	0.36	(0.35,0.378]	chr1	41287	3	SS3_PROX	SS3_PROX:INTRON	NOC2L	ENSG00000188976.11	ENST00000327044.7:ENST00000477976.5:ENST00000487214.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	10	87	2	1.34988	1.68689	2.0239	0.0498069	0.0110441	0.17488	0.0873897
chr2	15546716	15546816	1073018	0	-	0.35	(0.32,0.35]	chr2	114459	70	INTRON	INTRON	NBAS	ENSG00000151779.13	ENST00000281513.10	protein_coding	protein_coding	protein_coding	protein_coding	15	139	2	1.49423	1.68681	1.87939	0.0368837	0.00348181	0.13913	0.0541309
chr20	3868940	3869040	7226811	0	+	0.48	(0.476,0.515]	chr20	734456	29	UTR3	UTR3:EXON_MRNA	MAVS	ENSG00000088888.18	ENST00000416600.6:ENST00000428216.4	protein_coding	protein_coding	protein_coding	protein_coding	13	110	2	1.36472	1.6867450000000002	2.00877	0.0467985	0.00338095	0.167716	0.0517233
chr1	28749174	28749274	58470	0	+	0.49	(0.476,0.515]	chr1	7605	48	INTRON	INTRON	YTHDF2	ENSG00000198492.16	ENST00000542507.5:ENST00000373812.8:ENST00000541996.5:ENST00000478283.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	48	2	1.4553	1.686735	1.91817	0.0623645	0.0459211	0.175357	0.164984
chr2	181028914	181029014	936455	0	+	0.32	(0.28,0.32]	chr2	102627	390	INTRON	INTRON	UBE2E3	ENSG00000170035.16	ENST00000602303.5:ENST00000602959.5:ENST00000602479.5:ENST00000392415.6:ENST00000602291.5:ENST00000410062.9:ENST00000602499.5:ENST00000602710.5:ENST00000602762.5:ENST00000602888.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	52	2	1.61031	1.68662	1.76293	0.0766478	0.0600513	0.196164	0.190658
chr20	6018428	6018527	7230673	0	+	0.424242	(0.408,0.44]	chr20	734840	25	INTRON	INTRON	CRLS1	ENSG00000088766.12	ENST00000452938.5:ENST00000378863.9:ENST00000378868.4:ENST00000489345.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	65	2	1.62122	1.68656	1.7519	0.0394247	0.0239555	0.143072	0.129259
chr1	42687436	42687535	83993	0	+	0.515152	(0.476,0.515]	chr1	11020	36	INTRON	INTRON	YBX1	ENSG00000065978.19	ENST00000321358.12:ENST00000332220.10:ENST00000436427.1:ENST00000467957.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	64	2	1.50151	1.68649	1.87147	0.054954	0.0157856	0.165463	0.109464
chrX	71575192	71575292	7680394	0	+	0.43	(0.408,0.44]	chrX	786485	15	UTR3	UTR3:EXON_MRNA	OGT	ENSG00000147162.14	ENST00000373719.8	protein_coding	protein_coding	protein_coding	protein_coding	27	208	2	1.6858900000000001	1.68649	1.68709	0.00683511	0.00285019	0.0713405	0.0494641
chr20	2653393	2653478	7222206	0	+	0.541176	(0.515,0.57]	chr20	733827	1	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	NOP56	ENSG00000101361.17	ENST00000651302.1:ENST00000329276.10:ENST00000494697.5:ENST00000470143.1:ENST00000469588.5:ENST00000445139.1:ENST00000460258.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	10	68	2	1.57902	1.686435	1.79385	0.0229035	0.0201222	0.121243	0.118056
chr2	127847413	127847512	1225926	0	-	0.424242	(0.408,0.44]	chr2	130525	40	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	POLR2D	ENSG00000144231.11	ENST00000272645.9:ENST00000409955.1:ENST00000487079.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	24	184	2	0.997439	1.6863645	2.37529	0.058744	4.32228e-4	0.189982	0.0190829
chr16	70413365	70413464	6511207	0	-	0.535354	(0.515,0.57]	chr16	630689	119	INTRON	INTRON	ST3GAL2	ENSG00000157350.13	ENST00000342907.3:ENST00000566097.1:ENST00000561708.1:ENST00000567586.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	81	2	1.32091	1.68636	2.05181	0.0433059	0.00490181	0.162255	0.0609494
chr19	17267627	17267727	7029456	0	+	0.52	(0.515,0.57]	chr19	699843	1	SS5_PROX	SS5_PROX:INTRON	BABAM1	ENSG00000105393.16	ENST00000594247.5:ENST00000447614.6:ENST00000359435.8:ENST00000599474.5:ENST00000598188.6:ENST00000601043.5:ENST00000595393.5:ENST00000599057.5:ENST00000601171.5:ENST00000596335.5:ENST00000601436.5:ENST00000448635.2:ENST00000595632.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	12	81	2	1.32091	1.68636	2.05181	0.0433059	0.00490181	0.162255	0.0609494
chr17	28042433	28042510	6582515	0	+	0.467532	(0.44,0.476]	chr17	639823	3	INTRON	INTRON	NLK	ENSG00000087095.13	ENST00000583517.1	protein_coding	processed_transcript	protein_coding	processed_transcript	6	49	2	1.49942	1.6863350000000001	1.87325	0.0792118	0.0265709	0.199574	0.134088
chr1	67423213	67423310	477557	0	-	0.546392	(0.515,0.57]	chr1	57477	27	INTRON	INTRON	SERBP1	ENSG00000142864.15	ENST00000370994.8:ENST00000361219.11:ENST00000370995.6:ENST00000370990.5:ENST00000493607.1:ENST00000484880.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	16	116	2	1.22025	1.68631	2.15237	0.0515133	9.88375e-4	0.176696	0.0287748
chr21	6328947	6329047	7364863	0	+	0.45	(0.44,0.476]	chr21	751664	45	INTRON	INTRON	ENSG00000278903	ENSG00000278903.4	ENST00000688458.1:ENST00000689306.1:ENST00000692898.1:ENST00000624576.3:ENST00000623738.3:ENST00000692237.1:ENST00000692046.1:ENST00000689354.1:ENST00000624165.1	lncRNA	lncRNA	lncRNA	lncRNA	6	49	2	1.55662	1.6862849999999998	1.81595	0.0688347	0.0317953	0.184298	0.14477
chr1	32328469	32328567	65088	0	+	0.479592	(0.476,0.515]	chr1	8345	4	INTRON	INTRON	HDAC1	ENSG00000116478.12	ENST00000373548.8:ENST00000428704.1:ENST00000490081.5:ENST00000482310.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	95	2	1.37743	1.68621	1.99499	0.0477443	0.00408599	0.153019	0.0581771
chr6	110893516	110893616	2939142	0	+	0.37	(0.35,0.378]	chr6	276795	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	AMD1	ENSG00000123505.19	ENST00000451850.6:ENST00000675380.1:ENST00000368882.8:ENST00000672937.2:ENST00000368885.8:ENST00000368877.9:ENST00000368876.2:ENST00000612642.4:ENST00000619590.1:ENST00000465404.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	69	2	1.3017	1.686095	2.07049	0.0757564	0.0140397	0.194427	0.102801
chr5	625378	625478	2313510	0	+	0.56	(0.515,0.57]	chr5	223852	4	INTRON	INTRON	CEP72	ENSG00000112877.8	ENST00000264935.6	protein_coding	protein_coding	protein_coding	protein_coding	7	48	2	1.5060500000000001	1.6860750000000002	1.8661	0.0511812	0.0274846	0.176696	0.123904
chr1	112948182	112948282	524064	0	-	0.49	(0.476,0.515]	chr1	61694	123	INTRON	INTRON	SLC16A1	ENSG00000155380.13	ENST00000679803.1:ENST00000369626.8:ENST00000538576.5:ENST00000429288.2:ENST00000458229.6:ENST00000679846.1:ENST00000478835.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	10	74	2	1.16414	1.6860149999999998	2.20789	0.0758174	0.00820497	0.194479	0.081115
chr16	88965666	88965766	6541184	0	-	0.46	(0.44,0.476]	chr16	634108	80	INTRON	INTRON	CBFA2T3	ENSG00000129993.15	ENST00000268679.9:ENST00000563640.1	protein_coding	protein_coding	protein_coding	protein_coding	9	73	2	1.40212	1.685935	1.96975	0.0524678	0.0123514	0.178047	0.0914865
chr1	246995720	246995820	682474	0	-	0.52	(0.515,0.57]	chr1	80080	3	SS5_PROX	SS5_PROX:INTRON	ZNF670-ZNF695:ZNF695	ENSG00000135747.11:ENSG00000197472.15	ENST00000465049.6:ENST00000479214.5:ENST00000366504.6:ENST00000491337.6:ENST00000487338.6:ENST00000498046.2:ENST00000474541.1:ENST00000339986.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	42	2	1.67758	1.685825	1.69407	0.0471728	0.0459452	0.168737	0.149888
chr9	20083	20182	4226131	0	-	0.555556	(0.515,0.57]	chr9	388479	12	INTRON	INTRON	WASHC1	ENSG00000181404.18	ENST00000442898.5:ENST00000696149.1:ENST00000696150.1:ENST00000696151.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	42	2	1.67758	1.685825	1.69407	0.0471728	0.0459452	0.168737	0.149888
chr16	89390680	89390780	6542592	0	-	0.49	(0.476,0.515]	chr16	634240	172	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000647238.1:ENST00000644045.1:ENST00000643147.1:ENST00000644139.1:ENST00000568512.6:ENST00000566973.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	63	2	1.63838	1.68566	1.73294	0.0555021	0.0174121	0.165463	0.112632
chr15	92884656	92884751	6103523	0	+	0.326316	(0.32,0.35]	chr15	581358	4	EXON_MRNA	EXON_MRNA:INTRON	CHASERR:ENSG00000279765	ENSG00000272888.8:ENSG00000279765.3	ENST00000653163.1:ENST00000557682.6:ENST00000556895.5:ENST00000554669.6:ENST00000554894.5:ENST00000557147.1:ENST00000629685.2:ENST00000554133.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	12	108	2	1.67688	1.685645	1.69441	0.0361676	0.00976809	0.138959	0.0877296
chrX	44907685	44907785	7648947	0	+	0.42	(0.408,0.44]	chrX	782726	333	INTRON	INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000675440.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000621147.5:ENST00000475233.1:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	70	2	1.67948	1.6856	1.69172	0.0486032	0.0154364	0.153946	0.108739
chr22	21980323	21980421	7562003	0	-	0.418367	(0.408,0.44]	chr22	773552	38	INTRON	INTRON	TOP3B	ENSG00000100038.20	ENST00000357179.10:ENST00000457179.5:ENST00000444502.5:ENST00000398793.6:ENST00000424393.5:ENST00000437929.5:ENST00000430142.5:ENST00000456075.5:ENST00000449704.5:ENST00000437103.1:ENST00000434517.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	80	2	1.4846	1.68555	1.8865	0.034616	0.0148842	0.136674	0.107116
chr5	65941693	65941793	2370995	0	+	0.4	(0.378,0.408]	chr5	228472	145	INTRON	INTRON	ERBIN	ENSG00000112851.15	ENST00000380943.6:ENST00000507490.1:ENST00000416865.6:ENST00000380935.5:ENST00000284037.10:ENST00000380938.6:ENST00000511297.5:ENST00000506030.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	15	110	2	1.33048	1.685245	2.04001	0.0250007	0.00996995	0.132788	0.08427
chr6	75637995	75638095	2905313	0	+	0.49	(0.476,0.515]	chr6	274513	28	INTRON	INTRON	SENP6	ENSG00000112701.18	ENST00000370010.6:ENST00000447266.7:ENST00000327284.12:ENST00000483859.6:ENST00000424947.6	protein_coding	protein_coding	protein_coding	protein_coding	11	84	2	1.31026	1.685185	2.06011	0.046104	0.00869033	0.165623	0.0788605
chr10	78037993	78038088	4475922	0	+	0.463158	(0.44,0.476]	chr10	411990	1	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	RPS24	ENSG00000138326.21	ENST00000613865.5:ENST00000435275.5:ENST00000645440.1:ENST00000440692.6:ENST00000360830.9:ENST00000372360.9:ENST00000464716.6:ENST00000485708.7:ENST00000645698.1:ENST00000476545.6:ENST00000465692.2:ENST00000482069.5:ENST00000645195.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	12	83	2	1.1509	1.6851	2.2193	0.0583814	0.00896114	0.189306	0.0800073
chr17	27300673	27300772	6580598	0	+	0.40404	(0.378,0.408]	chr17	639604	30	INTRON	INTRON	WSB1	ENSG00000109046.15	ENST00000581440.5:ENST00000578312.5:ENST00000583742.1:ENST00000467843.6:ENST00000579733.5:ENST00000583193.5:ENST00000262394.7:ENST00000427287.6:ENST00000581185.5:ENST00000584354.1:ENST00000583786.5:ENST00000581089.1:ENST00000348811.6:ENST00000582208.1:ENST00000584114.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	29	214	2	1.46649	1.68506	1.90363	0.00633531	0.00464797	0.0722637	0.0600108
chr10	5902419	5902519	4385303	0	+	0.41	(0.408,0.44]	chr10	404631	69	INTRON	INTRON	FBH1	ENSG00000134452.20	ENST00000397269.7:ENST00000362091.9:ENST00000470089.5:ENST00000462507.1:ENST00000379999.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	57	2	1.4947	1.6848	1.8749	0.0566065	0.0264246	0.167352	0.133676
chr19	39384313	39384410	7067637	0	+	0.57732000000000006	(0.57,1]	chr19	705754	7	UTR3	UTR3:EXON_MRNA:INTRON	SAMD4B	ENSG00000179134.16	ENST00000610417.5:ENST00000314471.10:ENST00000596368.1	protein_coding	protein_coding	protein_coding	protein_coding	8	33	2	1.57876	1.684695	1.79063	0.0356001	0.0296165	0.15159	0.128657
chr22	21605156	21605256	7482079	0	+	0.41	(0.408,0.44]	chr22	763238	118	INTRON	INTRON	UBE2L3	ENSG00000185651.16	ENST00000458578.6:ENST00000545681.2:ENST00000696046.1:ENST00000342192.9:ENST00000496722.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	103	2	1.35901	1.684665	2.01032	0.0428833	0.00377558	0.148082	0.0562562
chr7	127748994	127749094	3403380	0	+	0.36	(0.35,0.378]	chr7	318134	272	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000468166.5:ENST00000465900.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	110	2	1.67836	1.68464	1.69092	0.0239575	0.0099105	0.11951	0.0877296
chr17	57681701	57681800	6637033	0	+	0.30303	(0.28,0.32]	chr17	648142	22	UTR3	UTR3:EXON_MRNA	MSI2	ENSG00000153944.12	ENST00000284073.7:ENST00000674964.1:ENST00000675379.1:ENST00000674522.1	protein_coding	protein_coding	protein_coding	protein_coding	11	112	2	1.56174	1.68451	1.80728	0.039921	0.0108259	0.143115	0.0920575
chr12	110302427	110302527	5226314	0	+	0.39	(0.378,0.408]	chr12	495250	53	INTRON	INTRON	ATP2A2	ENSG00000174437.18	ENST00000308664.10:ENST00000539276.7:ENST00000377685.9:ENST00000548169.2:ENST00000550248.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	60	2	1.42205	1.6844299999999999	1.94681	0.0457723	0.0390695	0.161228	0.149888
chr9	130732054	130732154	4214045	0	+	0.35	(0.32,0.35]	chr9	386427	172	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000393293.4	protein_coding	protein_coding	protein_coding	protein_coding	19	176	2	1.57832	1.684425	1.79053	0.0147832	0.00526038	0.0985265	0.0656295
chr1	19912345	19912445	41047	0	+	0.51	(0.476,0.515]	chr1	4832	47	UTR3	UTR3:EXON_MRNA	OTUD3	ENSG00000169914.6	ENST00000375120.4	protein_coding	protein_coding	protein_coding	protein_coding	8	64	2	1.63187	1.684375	1.73688	0.037661	0.0252731	0.14058	0.133676
chr19	10875315	10875415	7015005	0	+	0.46	(0.44,0.476]	chr19	697070	30	INTRON	INTRON	CARM1	ENSG00000142453.12	ENST00000327064.9:ENST00000588947.5:ENST00000590699.5:ENST00000344150.8:ENST00000586221.5:ENST00000590039.5:ENST00000589693.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	56	2	1.65297	1.684355	1.71574	0.045256	0.0331814	0.149888	0.145918
chr22	40954727	40954826	7521295	0	+	0.454545	(0.44,0.476]	chr22	768492	7	INTRON	INTRON	RBX1	ENSG00000100387.9	ENST00000476110.1:ENST00000216225.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	64	2	1.49531	1.68428	1.87325	0.0421587	0.0265709	0.148082	0.134088
chrX	123602751	123602851	7877704	0	-	0.51	(0.476,0.515]	chrX	802388	23	UTR3	UTR3:EXON_MRNA:INTRON	THOC2	ENSG00000125676.20	ENST00000448128.5:ENST00000245838.13:ENST00000441692.5:ENST00000492203.1:ENST00000497887.5:ENST00000618150.4:ENST00000432353.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	62	2	1.48272	1.6842700000000002	1.88582	0.0410274	0.0273268	0.161534	0.123904
chr12	56679321	56679420	5335991	0	-	0.555556	(0.515,0.57]	chr12	510192	59	INTRON	INTRON	PTGES3	ENSG00000110958.16	ENST00000537473.2:ENST00000614328.4:ENST00000262033.11:ENST00000414274.7:ENST00000436399.6:ENST00000448157.6:ENST00000456859.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	61	2	1.58964	1.68426	1.77888	0.0408	0.0139834	0.1451	0.10247
chr19	36551179	36551277	7174677	0	-	0.326531	(0.32,0.35]	chr19	725068	25	INTRON	INTRON	ZNF529	ENSG00000186020.13	ENST00000591340.6:ENST00000334116.7:ENST00000586115.5:ENST00000585983.5:ENST00000585960.5	protein_coding	protein_coding	protein_coding	protein_coding	8	74	2	1.30365	1.684215	2.06478	0.0773448	0.0147778	0.196285	0.106702
chr3	177129083	177129182	1871760	0	-	0.30303	(0.28,0.32]	chr3	187412	31	INTRON	INTRON	TBL1XR1	ENSG00000177565.18	ENST00000457928.7:ENST00000430069.5:ENST00000673974.1:ENST00000352800.10:ENST00000422442.6:ENST00000428970.5:ENST00000424913.5:ENST00000437738.5:ENST00000431421.5:ENST00000635794.1:ENST00000630796.2:ENST00000450267.5:ENST00000630833.2:ENST00000431674.5:ENST00000422066.5:ENST00000443315.5:ENST00000627825.2:ENST00000427349.5:ENST00000413084.5:ENST00000637137.1:ENST00000491623.2:ENST00000637544.1:ENST00000636478.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	72	2	1.68409	1.6841	1.68411	0.0548665	0.0323543	0.165463	0.145026
chr1	1728776	1728874	361262	0	-	0.326531	(0.32,0.35]	chr1	42112	30	INTRON	INTRON	ENSG00000268575:SLC35E2A	ENSG00000268575.1:ENSG00000215790.8	ENST00000598846.1:ENST00000647043.1	lncRNA	lncRNA	lncRNA:transcribed_unprocessed_pseudogene	lncRNA:processed_transcript	7	66	2	1.60297	1.6840000000000002	1.76503	0.0647328	0.0240772	0.179192	0.129859
chr1	26238370	26238469	49526	0	+	0.535354	(0.515,0.57]	chr1	6192	37	INTRON	INTRON	CEP85	ENSG00000130695.16	ENST00000451429.8:ENST00000640292.2:ENST00000252992.8	protein_coding	protein_coding	protein_coding	protein_coding	7	48	2	1.48539	1.68399	1.88259	0.0553982	0.0251849	0.165463	0.133519
chr1	245076807	245076906	349466	0	+	0.515152	(0.476,0.515]	chr1	40443	8	INTRON	INTRON	EFCAB2	ENSG00000203666.13	ENST00000366523.6:ENST00000391837.7:ENST00000366522.6:ENST00000497591.5:ENST00000447569.6:ENST00000473686.5:ENST00000366521.7:ENST00000487845.5:ENST00000549220.5:ENST00000495271.5:ENST00000425550.5:ENST00000551317.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	16	118	2	1.65506	1.6838600000000001	1.71266	0.0293304	0.00532145	0.128055	0.0660606
chr11	70293951	70294051	4820644	0	+	0.56	(0.515,0.57]	chr11	449385	95	INTRON	INTRON	PPFIA1	ENSG00000131626.19	ENST00000253925.12:ENST00000389547.7:ENST00000532504.5:ENST00000530746.1:ENST00000532024.1:ENST00000648755.1:ENST00000644155.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	54	2	1.63184	1.683595	1.73535	0.0545832	0.0165373	0.165292	0.110511
chr7	6056572	6056669	3476225	0	-	0.309278	(0.28,0.32]	chr7	325245	15	INTRON	INTRON	EIF2AK1	ENSG00000086232.13	ENST00000199389.11:ENST00000431744.5:ENST00000463213.5:ENST00000446699.1:ENST00000461493.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	72	2	1.64429	1.68354	1.72279	0.0496859	0.0365539	0.156383	0.153932
chr19	17070987	17071086	7151032	0	-	0.50505	(0.476,0.515]	chr19	722537	15	INTRON	INTRON	HAUS8	ENSG00000131351.15	ENST00000253669.10:ENST00000448593.6:ENST00000593360.1:ENST00000598517.5:ENST00000601564.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	62	2	1.43644	1.6835149999999999	1.93059	0.047372	0.023762	0.169265	0.118822
chr21	14748375	14748475	7430070	0	-	0.3	(0.28,0.32]	chr21	757872	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	ENSG00000232884	ENSG00000232884.10	ENST00000673788.1:ENST00000660333.1:ENST00000660772.1:ENST00000665066.1:ENST00000670675.1:ENST00000674136.1:ENST00000658213.1:ENST00000455253.6:ENST00000654377.1:ENST00000454128.3:ENST00000655631.1:ENST00000661285.1	lncRNA	lncRNA	lncRNA	lncRNA	11	109	2	1.66573	1.683475	1.70122	0.0356118	0.01452	0.138061	0.105503
chr14	101908891	101908989	5819999	0	+	0.520408	(0.515,0.57]	chr14	551930	20	INTRON	INTRON	PPP2R5C	ENSG00000078304.20	ENST00000694906.1:ENST00000422945.6:ENST00000328724.9:ENST00000350249.7:ENST00000334743.9:ENST00000445439.7:ENST00000556218.5:ENST00000557716.2:ENST00000561006.5:ENST00000555237.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	67	2	1.29901	1.683295	2.06758	0.0394428	0.0140038	0.161534	0.0959618
chr22	16795181	16795280	7546351	0	-	0.343434	(0.32,0.35]	chr22	771315	104	INTRON	INTRON	XKR3	ENSG00000172967.8	ENST00000331428.5:ENST00000684488.1	protein_coding	protein_coding	protein_coding	protein_coding	8	77	2	1.59364	1.683085	1.77253	0.0413426	0.0271031	0.161557	0.123904
chr4	165339366	165339454	2079753	0	+	0.465909	(0.44,0.476]	chr4	205581	2	INTRON	INTRON	MSMO1	ENSG00000052802.13	ENST00000507013.5:ENST00000261507.11:ENST00000393766.6:ENST00000504317.1	protein_coding	protein_coding	protein_coding	protein_coding	9	66	2	1.59515	1.68308	1.77101	0.0693975	0.0165796	0.184298	0.110511
chr10	912799	912899	4542398	0	-	0.46	(0.44,0.476]	chr10	419304	94	INTRON	INTRON	LARP4B	ENSG00000107929.16	ENST00000316157.8:ENST00000690516.1:ENST00000476529.5:ENST00000406525.6:ENST00000481118.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	10	78	2	1.24474	1.6830500000000002	2.12136	0.070785699999999993	0.00591413	0.184528	0.0694038
chr2	144519938	144520030	1241825	0	-	0.478261	(0.476,0.515]	chr2	131788	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	ZEB2	ENSG00000169554.23	ENST00000636471.1:ENST00000627532.3:ENST00000419938.5:ENST00000636026.2:ENST00000675069.1:ENST00000689298.1:ENST00000539609.7:ENST00000303660.8:ENST00000637267.2:ENST00000465308.5:ENST00000472146.5:ENST00000476394.5:ENST00000453352.5:ENST00000444559.5:ENST00000465070.5:ENST00000636445.1:ENST00000629520.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	30	230	2	1.55822	1.683015	1.80781	0.0101613	0.00122826	0.0850389	0.0325799
chr20	50931349	50931437	7355880	0	-	0.625	(0.57,1]	chr20	750116	7	UTR5	UTR5:EXON_MRNA	ADNP	ENSG00000101126.18	ENST00000621696.5:ENST00000673732.1:ENST00000396029.8:ENST00000396032.8:ENST00000645081.1	protein_coding	protein_coding	protein_coding	protein_coding	7	29	2	1.52818	1.682935	1.83769	0.0508101	0.0297587	0.175989	0.12908
chr13	110901094	110901194	5650506	0	-	0.23	[0,0.28]	chr13	538369	4	SS3_PROX	SS3_PROX:INTRON	ANKRD10	ENSG00000088448.14	ENST00000267339.6:ENST00000489973.6:ENST00000310847.8:ENST00000465753.1:ENST00000494859.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	15	172	2	1.66034	1.6828599999999998	1.70538	0.0267275	0.00977975	0.123349	0.0877296
chr6	13682302	13682402	3058930	0	-	0.26	[0,0.28]	chr6	284542	231	INTRON	INTRON	RANBP9	ENSG00000010017.13	ENST00000011619.6	protein_coding	protein_coding	protein_coding	protein_coding	12	141	2	1.45581	1.682805	1.9098	0.0586144	0.00633346	0.167915	0.0722443
chr19	1428442	1428541	6995311	0	+	0.494949	(0.476,0.515]	chr19	693206	22	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	DAZAP1	ENSG00000071626.17	ENST00000336761.10:ENST00000233078.9:ENST00000592522.5:ENST00000586579.5:ENST00000587079.5:ENST00000592453.2:ENST00000589484.5:ENST00000585485.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	27	201	2	1.44777	1.682705	1.91764	0.0087572	0.00261553	0.0846118	0.0455413
chr1	20744008	20744106	389421	0	-	0.489796	(0.476,0.515]	chr1	46510	39	UTR3	UTR3:EXON_MRNA:INTRON	HP1BP3	ENSG00000127483.19	ENST00000438032.6:ENST00000312239.10:ENST00000375003.6:ENST00000488722.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	101	763	2	1.61701	1.68261	1.74821	0.00103263	9.60296e-4	0.0294268	0.0282401
chr12	71650196	71650295	5363455	0	-	0.484848	(0.476,0.515]	chr12	512031	20	INTRON	INTRON	ZFC3H1	ENSG00000133858.17	ENST00000378743.9:ENST00000552994.5:ENST00000550712.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	47	2	1.63962	1.6825999999999999	1.72558	0.0767648	0.0346854	0.196164	0.148144
chr1	23975376	23975475	402117	0	-	0.191919	[0,0.28]	chr1	48290	4	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	SRSF10	ENSG00000188529.15	ENST00000492112.3:ENST00000344989.10:ENST00000341154.10:ENST00000453840.7:ENST00000484146.6:ENST00000473858.5:ENST00000374452.9:ENST00000374453.7:ENST00000343255.9:ENST00000485841.5:ENST00000338597.9:ENST00000495785.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	12	133	2	1.3742	1.682515	1.99083	0.0375991	0.0167575	0.156089	0.103184
chr1	21726963	21727062	396288	0	-	0.30303	(0.28,0.32]	chr1	47279	5	INTRON	INTRON	USP48	ENSG00000090686.16	ENST00000400301.5:ENST00000308271.14:ENST00000529637.5:ENST00000526044.5:ENST00000534705.5	protein_coding	protein_coding	protein_coding	protein_coding	16	161	2	1.50551	1.68251	1.85951	0.0379201	0.00355401	0.141362	0.0547697
chr3	186785686	186785784	1586110	0	+	0.397959	(0.378,0.408]	chr3	164277	7	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	EIF4A2	ENSG00000156976.17	ENST00000426808.5:ENST00000323963.10:ENST00000440191.6:ENST00000425053.5:ENST00000429589.5:ENST00000495049.5:ENST00000465267.5:ENST00000485101.5:ENST00000475653.5:ENST00000443963.5:ENST00000467585.1:ENST00000498746.1:ENST00000466362.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	20	166	2	1.56451	1.682455	1.8004	0.0096453	0.00895135	0.0870523	0.0800073
chr18	9948848	9948945	6873700	0	+	0.350515	(0.35,0.378]	chr18	680899	14	EXON_MRNA	EXON_MRNA:INTRON	VAPA	ENSG00000101558.14	ENST00000400000.7:ENST00000340541.4:ENST00000584796.5:ENST00000583879.5:ENST00000583475.1:ENST00000577539.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	16	128	2	1.3909	1.682425	1.97395	0.0202884	0.00872531	0.121522	0.0788605
chr4	82368329	82368429	2177482	0	-	0.39	(0.378,0.408]	chr4	214146	83	INTRON	INTRON	HNRNPD	ENSG00000138668.19	ENST00000313899.12:ENST00000353341.8:ENST00000352301.8:ENST00000513584.1:ENST00000509263.5:ENST00000507010.5:ENST00000515432.1:ENST00000503822.1:ENST00000509107.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	18	146	2	1.23875	1.68241	2.12607	0.0444179	0.00110813	0.149888	0.0305035
chr7	151500670	151500769	3674733	0	-	0.272727	[0,0.28]	chr7	341207	21	INTRON	INTRON	RHEB	ENSG00000106615.10	ENST00000262187.10:ENST00000472642.5:ENST00000478470.5:ENST00000496004.5:ENST00000470370.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	13	142	2	1.5055	1.68235	1.8592	0.0250628	0.0209482	0.122348	0.12011
chr12	106986373	106986470	5403986	0	-	0.329897	(0.32,0.35]	chr12	515667	14	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MTERF2	ENSG00000120832.10	ENST00000240050.9:ENST00000392830.6:ENST00000552029.1:ENST00000548101.1:ENST00000550496.1:ENST00000547115.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	16	150	2	1.39196	1.682295	1.97263	0.0269614	0.00522217	0.135436	0.0633615
chr14	21265709	21265805	5835131	0	-	0.458333	(0.44,0.476]	chr14	554469	3	INTRON	INTRON	HNRNPC	ENSG00000092199.19	ENST00000336053.10:ENST00000553300.6:ENST00000554969.5:ENST00000556142.5:ENST00000554455.5:ENST00000553753.5:ENST00000555309.5:ENST00000555914.5:ENST00000557442.5:ENST00000556628.5:ENST00000556513.5:ENST00000555883.5:ENST00000557201.5:ENST00000420743.6:ENST00000554539.5:ENST00000554383.5:ENST00000555215.5:ENST00000555137.5:ENST00000554891.5:ENST00000556226.5:ENST00000555176.5:ENST00000553614.5:ENST00000557336.1:ENST00000557768.1:ENST00000557033.1:ENST00000555127.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	15	120	2	1.44103	1.68221	1.92339	0.0244867	0.00506144	0.131869	0.0621733
chr4	82882340	82882440	2180021	0	-	0.36	(0.35,0.378]	chr4	214407	4	SS3_PROX	SS3_PROX:INTRON	SEC31A	ENSG00000138674.17	ENST00000395310.7:ENST00000513858.5:ENST00000348405.8:ENST00000448323.5:ENST00000311785.11:ENST00000509142.5:ENST00000443462.6:ENST00000355196.6:ENST00000508502.5:ENST00000505984.5:ENST00000508479.5:ENST00000436790.6:ENST00000503058.5:ENST00000507816.5:ENST00000514326.5:ENST00000513323.5:ENST00000511975.5:ENST00000507340.5:ENST00000507867.5:ENST00000506497.5:ENST00000510310.1:ENST00000503210.5:ENST00000505434.5:ENST00000507676.5:ENST00000506495.5:ENST00000507051.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	14	116	2	1.5379	1.68219	1.82648	0.0150408	0.014741	0.106702	0.0994339
chr20	47226121	47226217	7348189	0	-	0.364583	(0.35,0.378]	chr20	749247	12	INTRON	INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000467200.6:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4	protein_coding	protein_coding	protein_coding	protein_coding	9	79	2	1.51819	1.68215	1.84611	0.0372715	0.0204148	0.155878	0.110862
chr2	173364508	173364603	922500	0	+	0.284211	(0.28,0.32]	chr2	101548	6	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CDCA7	ENSG00000144354.15	ENST00000347703.7:ENST00000695912.1:ENST00000695913.1:ENST00000306721.8:ENST00000496441.5:ENST00000410019.3:ENST00000410101.7:ENST00000695914.1:ENST00000435616.5:ENST00000467411.5:ENST00000695901.1:ENST00000468359.1:ENST00000695911.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	72	2	1.60343	1.68202	1.76061	0.0669889	0.0253826	0.183051	0.133676
chr7	131419087	131419186	3417362	0	+	0.353535	(0.35,0.378]	chr7	319231	40	INTRON	INTRON	MKLN1	ENSG00000128585.18	ENST00000421797.6:ENST00000352689.11:ENST00000494785.5:ENST00000458153.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	68	2	1.32176	1.682	2.04224	0.0452456	0.0363073	0.163924	0.138959
chr3	170157179	170157278	1861584	0	-	0.323232	(0.32,0.35]	chr3	186655	61	INTRON	INTRON	PHC3	ENSG00000173889.16	ENST00000495893.7:ENST00000494943.5:ENST00000467570.5:ENST00000484931.5:ENST00000479467.5:ENST00000466189.5:ENST00000475729.5:ENST00000474275.5:ENST00000472330.5:ENST00000465896.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	61	2	1.42176	1.68189	1.94202	0.0511006	0.0486128	0.176696	0.153946
chr15	28683133	28683232	5988889	0	+	0.333333	(0.32,0.35]	chr15	569411	9	INTRON	INTRON	HERC2P9	ENSG00000206149.11	ENST00000528584.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	13	121	2	1.53522	1.681815	1.82841	0.0267502	0.00930076	0.123349	0.0855292
chr7	102653179	102653279	3589052	0	-	0.49	(0.476,0.515]	chr7	335089	105	INTRON	INTRON	ENSG00000267645	ENSG00000267645.5	ENST00000476151.5	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	8	63	2	1.44826	1.6817549999999999	1.91525	0.0482164	0.0232571	0.153146	0.127416
chr17	42472438	42472538	6611427	0	+	0.61	(0.57,1]	chr17	644092	11	INTRON	INTRON	ATP6V0A1	ENSG00000033627.17	ENST00000393829.6:ENST00000343619.9:ENST00000537728.5:ENST00000588901.5:ENST00000264649.10:ENST00000585525.5:ENST00000544137.5:ENST00000589727.5:ENST00000592324.1:ENST00000587375.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	29	2	1.37384	1.6816849999999999	1.98953	0.0766386	0.0182848	0.196164	0.115629
chr2	170994056	170994156	1262403	0	-	0.36	(0.35,0.378]	chr2	133789	1	SS3_PROX	SS3_PROX:INTRON	TLK1	ENSG00000198586.14	ENST00000431350.7:ENST00000360843.7:ENST00000359766.7:ENST00000521943.5:ENST00000434911.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	71	2	1.54566	1.681665	1.81767	0.0640429	0.0207593	0.177882	0.122348
chrX	41204314	41204412	7645292	0	+	0.387755	(0.378,0.408]	chrX	782403	27	INTRON	INTRON	USP9X	ENSG00000124486.14	ENST00000324545.9:ENST00000378308.7	protein_coding	protein_coding	protein_coding	protein_coding	9	65	2	1.35931	1.681645	2.00398	0.0393907	0.0393906	0.161534	0.143072
chr7	75473203	75473303	3558799	0	-	0.34	(0.32,0.35]	chr7	331545	306	INTRON	INTRON	POM121C	ENSG00000272391.6	ENST00000615331.5:ENST00000398379.2	protein_coding	protein_coding	protein_coding	protein_coding	16	148	2	1.46859	1.68164	1.89469	0.0399069	0.0026576	0.14308	0.0475581
chr16	81489658	81489758	6405446	0	+	0.59	(0.57,1]	chr16	615026	438	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8	protein_coding	protein_coding	protein_coding	protein_coding	7	29	2	1.46969	1.6816	1.89351	0.0586892	0.0255126	0.167915	0.133676
chr15	82391743	82391843	6075898	0	+	0.3	(0.28,0.32]	chr15	578727	360	INTRON	INTRON	UBE2Q2P2	ENSG00000259429.5	ENST00000618775.4	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	9	89	2	1.6789	1.681495	1.68409	0.0548665	0.017572	0.165463	0.11319
chr16	21441314	21441414	6460728	0	-	0.47	(0.44,0.476]	chr16	623226	7	INTRON	INTRON	NPIPB3	ENSG00000169246.16	ENST00000545358.5:ENST00000543368.1:ENST00000544154.1	protein_coding	retained_intron	protein_coding	retained_intron:processed_transcript	10	78	2	1.4592	1.681475	1.90375	0.0342963	0.0156406	0.147255	0.101393
chr7	12400863	12400962	3485411	0	-	0.313131	(0.28,0.32]	chr7	325970	67	INTRON	INTRON	VWDE	ENSG00000146530.15	ENST00000275358.8:ENST00000452576.6:ENST00000521169.5:ENST00000326715.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	92	2	1.39438	1.681395	1.96841	0.0635439	0.0124199	0.177272	0.0973643
chr6	13672814	13672914	3058835	0	-	0.36	(0.35,0.378]	chr6	284542	136	INTRON	INTRON	RANBP9	ENSG00000010017.13	ENST00000011619.6	protein_coding	protein_coding	protein_coding	protein_coding	8	70	2	1.5118	1.68136	1.85092	0.0789277	0.0114682	0.198963	0.0956037
chr9	131176596	131176694	4216154	0	+	0.367347	(0.35,0.378]	chr9	386623	11	EXON_MRNA	EXON_MRNA:INTRON	NUP214	ENSG00000126883.19	ENST00000695497.1:ENST00000695498.1:ENST00000695496.1:ENST00000695495.1:ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000525980.5:ENST00000526346.5:ENST00000531929.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	75	2	1.56836	1.68128	1.7942	0.0378648	0.0240966	0.141212	0.129929
chr3	6527838	6527938	1356519	0	+	0.39	(0.378,0.408]	chr3	142508	147	INTRON	INTRON	ENSG00000189229	ENSG00000189229.12	ENST00000660158.1:ENST00000433639.1:ENST00000655754.1:ENST00000653839.1:ENST00000662846.1:ENST00000659876.1:ENST00000414438.2:ENST00000658468.1:ENST00000414603.1:ENST00000669512.1:ENST00000667028.1:ENST00000655541.1:ENST00000668643.1:ENST00000671568.1:ENST00000671036.1:ENST00000669798.1:ENST00000655753.1:ENST00000655856.1:ENST00000658398.1:ENST00000661518.1:ENST00000661279.1:ENST00000655495.1:ENST00000663041.1:ENST00000659827.1:ENST00000667716.1:ENST00000662508.1:ENST00000668416.1:ENST00000658133.1:ENST00000659651.1:ENST00000342990.4:ENST00000660054.1:ENST00000671370.1	lncRNA	lncRNA	lncRNA	lncRNA	25	202	2	1.47631	1.681265	1.88622	0.0141094	0.001668	0.0959618	0.0378648
chr5	65927905	65928005	2370857	0	+	0.33	(0.32,0.35]	chr5	228472	7	INTRON	INTRON	ERBIN	ENSG00000112851.15	ENST00000380943.6:ENST00000507490.1:ENST00000416865.6:ENST00000380935.5:ENST00000284037.10:ENST00000380938.6:ENST00000511297.5:ENST00000506030.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	92	2	1.23259	1.681195	2.1298	0.0530143	0.0141189	0.179488	0.0959618
chr2	10147231	10147331	690975	0	+	0.4	(0.378,0.408]	chr2	81105	12	INTRON	INTRON	RRM2	ENSG00000171848.16	ENST00000641498.1:ENST00000646978.1:ENST00000381786.7	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	7	60	2	1.64169	1.68107	1.72045	0.0424671	0.0377255	0.161763	0.14078
chr2	71334996	71335096	807042	0	+	0.33	(0.32,0.35]	chr2	90133	4	SS5_PROX	SS5_PROX:INTRON	ZNF638	ENSG00000075292.19	ENST00000494621.5:ENST00000410075.5:ENST00000466975.5:ENST00000466330.5:ENST00000437658.2:ENST00000464375.5:ENST00000475743.1:ENST00000409544.5:ENST00000455226.5:ENST00000454278.5:ENST00000264447.9:ENST00000454122.1:ENST00000417778.5:ENST00000487707.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	92	2	1.47118	1.68106	1.89094	0.0345598	0.0185636	0.148144	0.108861
chr16	24772338	24772438	6329642	0	+	0.4	(0.378,0.408]	chr16	605945	136	INTRON	INTRON	TNRC6A	ENSG00000090905.19	ENST00000395799.8:ENST00000315183.11:ENST00000562829.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	98	2	1.46195	1.6810450000000001	1.90014	0.0276002	0.0110079	0.137011	0.0873897
chr2	241324953	241325050	1053705	0	+	0.28866000000000003	(0.28,0.32]	chr2	112214	4	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	SEPTIN2	ENSG00000168385.18	ENST00000391973.6:ENST00000428282.5:ENST00000492978.5:ENST00000360051.7:ENST00000407017.5:ENST00000445030.5:ENST00000428524.5:ENST00000469434.5:ENST00000616972.4:ENST00000495463.5:ENST00000482304.5:ENST00000475474.5:ENST00000401990.5:ENST00000469175.5:ENST00000407971.5:ENST00000461048.5:ENST00000457335.5:ENST00000436795.5:ENST00000494824.5:ENST00000411484.5:ENST00000462147.5:ENST00000434955.5:ENST00000466211.5:ENST00000391971.7:ENST00000402092.6:ENST00000484740.1:ENST00000473479.5:ENST00000464128.5:ENST00000441533.5:ENST00000467971.5:ENST00000425899.5:ENST00000443492.5:ENST00000437066.5:ENST00000429791.5:ENST00000420786.5:ENST00000475823.5:ENST00000449239.5:ENST00000366210.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	81	2	1.60343	1.6810299999999998	1.75863	0.0669889	0.0177071	0.183051	0.11319
chr7	121169336	121169436	3395462	0	+	0.23	[0,0.28]	chr7	317781	193	INTRON	INTRON	CPED1	ENSG00000106034.18	ENST00000310396.10:ENST00000450913.6:ENST00000423795.5:ENST00000466055.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	95	2	1.55329	1.6810100000000001	1.80873	0.058079	0.0234525	0.167723	0.128429
chr17	1357520	1357619	6699174	0	-	0.424242	(0.408,0.44]	chr17	655527	28	INTRON	INTRON	YWHAE	ENSG00000108953.17	ENST00000264335.13:ENST00000466227.6:ENST00000571732.5:ENST00000573026.1:ENST00000496706.1:ENST00000573196.5:ENST00000575977.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	15	116	2	1.60291	1.680965	1.75902	0.0132052	0.0106839	0.0940535	0.0917964
chr9	130761454	130761554	4214339	0	+	0.36	(0.35,0.378]	chr9	386427	466	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000393293.4	protein_coding	protein_coding	protein_coding	protein_coding	13	104	2	1.31041	1.68096	2.05151	0.034956	0.00998861	0.149246	0.0843858
chr12	120881401	120881501	5435678	0	-	0.45	(0.44,0.476]	chr12	519663	459	INTRON	INTRON	SPPL3	ENSG00000157837.16	ENST00000353487.7:ENST00000536996.5:ENST00000543608.5:ENST00000543854.5	protein_coding	protein_coding	protein_coding	protein_coding	7	56	2	1.61163	1.68093	1.75023	0.0598319	0.0240995	0.169278	0.129929
chr10	27511349	27511445	4413440	0	+	0.46875	(0.44,0.476]	chr10	407060	10	INTRON	INTRON	RAB18	ENSG00000099246.18	ENST00000682082.1:ENST00000611151.5:ENST00000621805.5:ENST00000535776.6:ENST00000684501.1:ENST00000683042.1:ENST00000683797.1:ENST00000682518.1:ENST00000356940.11:ENST00000682852.1:ENST00000683419.1:ENST00000683816.1:ENST00000682389.1:ENST00000684393.1:ENST00000682368.1:ENST00000683755.1:ENST00000682181.1:ENST00000682963.1:ENST00000375802.7:ENST00000465772.5:ENST00000682668.1:ENST00000683538.1:ENST00000423465.2:ENST00000682173.1:ENST00000683844.1:ENST00000682138.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	56	2	1.38039	1.680925	1.98146	0.0762718	0.0186013	0.195539	0.117264
chr16	70541268	70541368	6385322	0	+	0.33	(0.32,0.35]	chr16	613912	2	SS3_PROX	SS3_PROX:INTRON	SF3B3	ENSG00000189091.13	ENST00000302516.10:ENST00000572365.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	66	2	1.55682	1.6808450000000001	1.80487	0.0724487	0.0210603	0.188101	0.122559
chr5	140409658	140409758	2502904	0	+	0.51	(0.476,0.515]	chr5	239166	70	INTRON	INTRON	ANKHD1	ENSG00000131503.21	ENST00000297183.10:ENST00000616482.4:ENST00000360839.7:ENST00000421134.5:ENST00000394723.7:ENST00000511151.5:ENST00000394722.7	protein_coding	protein_coding	protein_coding	protein_coding	7	56	2	1.50151	1.680825	1.86014	0.054954	0.0277606	0.165463	0.137011
chr11	5497564	5497664	4898198	0	-	0.41	(0.408,0.44]	chr11	459195	283	INTRON	INTRON	HBG2:ENSG00000239920:HBE1:OR51B5	ENSG00000196565.15:ENSG00000239920.2:ENSG00000213931.7:ENSG00000167355.8	ENST00000380252.6:ENST00000380259.7:ENST00000292896.3:ENST00000380237.5:ENST00000420726.6:ENST00000420465.6:ENST00000415970.6:ENST00000418729.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:nonsense_mediated_decay:processed_transcript	30	235	2	1.66486	1.6807750000000001	1.69669	0.00493743	0.00297914	0.0612423	0.0502194
chr2	54981616	54981716	1120713	0	-	0.4	(0.378,0.408]	chr2	120130	65	INTRON	INTRON	RTN4	ENSG00000115310.19	ENST00000394609.6:ENST00000404909.5:ENST00000394611.6:ENST00000317610.11:ENST00000357732.8:ENST00000337526.11:ENST00000357376.7:ENST00000405240.5:ENST00000486085.5:ENST00000438462.1	protein_coding	protein_coding	protein_coding	protein_coding	40	315	2	1.5521	1.68063	1.80916	0.0126721	6.34132e-4	0.0926667	0.022773
chr4	32060881	32060981	1942057	0	+	0.42	(0.408,0.44]	chr4	194727	627	INTRON	INTRON	LINC02506	ENSG00000251129.3	ENST00000662669.1:ENST00000665582.2:ENST00000667252.2:ENST00000660373.2:ENST00000684849.1:ENST00000513211.2:ENST00000659613.1:ENST00000657576.1:ENST00000686730.1:ENST00000685407.1:ENST00000685455.1:ENST00000655951.1	lncRNA	lncRNA	lncRNA	lncRNA	7	57	2	1.43792	1.680555	1.92319	0.062843	0.0247322	0.196433	0.12011
chr9	37771831	37771930	4121599	0	+	0.414141	(0.408,0.44]	chr9	375728	7	INTRON	INTRON	TRMT10B	ENSG00000165275.10	ENST00000377753.6:ENST00000537911.5:ENST00000297994.4:ENST00000377754.6:ENST00000488673.6:ENST00000537016.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	57	2	1.43792	1.680555	1.92319	0.062843	0.0247322	0.196433	0.12011
chr7	65004144	65004240	3537674	0	-	0.46875	(0.44,0.476]	chr7	329952	6	EXON_LNCRNA	EXON_LNCRNA:INTRON	ZNF117:ERV3-1	ENSG00000152926.16:ENSG00000213462.5	ENST00000487644.1:ENST00000394323.3:ENST00000528878.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	17	132	2	1.54523	1.6805050000000001	1.81578	0.0226567	0.00330163	0.117618	0.0527031
chr2	135854772	135854869	1233664	0	-	0.546392	(0.515,0.57]	chr2	131287	15	INTRON	INTRON	MCM6	ENSG00000076003.5	ENST00000264156.3:ENST00000492091.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	48	2	1.56681	1.68033	1.79385	0.064862	0.0201222	0.179394	0.121243
chrX	136866200	136866299	7897534	0	-	0.424242	(0.408,0.44]	chrX	804139	173	INTRON	INTRON	RBMX	ENSG00000147274.14	ENST00000561733.5	protein_coding	processed_transcript	protein_coding	processed_transcript	8	66	2	1.55035	1.68026	1.81017	0.0455214	0.0217525	0.164236	0.11491
chr7	106659694	106659792	3608682	0	-	0.408163	(0.378,0.408]	chr7	336558	55	UTR3	UTR3:EXON_MRNA	CCDC71L	ENSG00000253276.5	ENST00000523505.3	protein_coding	protein_coding	protein_coding	protein_coding	14	112	2	1.61488	1.679935	1.74499	0.029782200000000002	0.00577956	0.129138	0.0684334
chr21	44869793	44869891	7469089	0	-	0.540816	(0.515,0.57]	chr21	761251	38	INTRON	INTRON	PTTG1IP	ENSG00000183255.12	ENST00000397887.7:ENST00000445724.3:ENST00000330938.8:ENST00000494690.5:ENST00000480234.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	40	2	1.56838	1.6798700000000002	1.79136	0.0638444	0.0424458	0.177811	0.161763
chr21	33450720	33450817	7440678	0	-	0.319588	(0.28,0.32]	chr21	759328	21	UTR3	UTR3:EXON_MRNA	TMEM50B	ENSG00000142188.17	ENST00000420455.5:ENST00000542230.7:ENST00000441128.5:ENST00000442441.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	80	2	1.59898	1.6797300000000002	1.76048	0.0450149	0.030453	0.149888	0.143385
chr1	46307007	46307106	96569	0	+	0.545455	(0.515,0.57]	chr1	12964	28	INTRON	INTRON	UQCRH	ENSG00000173660.12	ENST00000311672.10:ENST00000489056.5:ENST00000486951.1:ENST00000496387.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	77	2	1.28214	1.679675	2.07721	0.0436578	0.0067022	0.148843	0.0738715
chr3	177156681	177156781	1872038	0	-	0.28	[0,0.28]	chr3	187422	206	INTRON	INTRON	TBL1XR1	ENSG00000177565.18	ENST00000457928.7:ENST00000430069.5:ENST00000673974.1:ENST00000352800.10:ENST00000422442.6:ENST00000428970.5:ENST00000424913.5:ENST00000437738.5:ENST00000431421.5:ENST00000635794.1:ENST00000630796.2:ENST00000450267.5:ENST00000630833.2:ENST00000431674.5:ENST00000422066.5:ENST00000443315.5:ENST00000627825.2:ENST00000427349.5:ENST00000413084.5:ENST00000637137.1:ENST00000491623.2:ENST00000637544.1:ENST00000636187.1:ENST00000636912.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	9	101	2	1.56265	1.6796600000000002	1.79667	0.0445299	0.0287651	0.149888	0.139973
chr2	97131806	97131906	831032	0	+	0.41	(0.408,0.44]	chr2	92964	43	INTRON	INTRON	ANKRD36	ENSG00000135976.21	ENST00000420699.9:ENST00000652721.1:ENST00000461153.7	protein_coding	protein_coding	protein_coding	protein_coding	16	118	2	1.10017	1.679455	2.25874	0.0623377	0.00181031	0.175343	0.0393822
chr7	152244477	152244574	3679356	0	-	0.28866000000000003	(0.28,0.32]	chr7	341574	5	UTR3	UTR3:EXON_MRNA:INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000681033.1:ENST00000679645.1:ENST00000684550.1:ENST00000489110.2:ENST00000683490.1:ENST00000680479.1:ENST00000683616.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	15	144	2	1.11658	1.679335	2.24209	0.0732531	0.0025277	0.189927	0.0465056
chr1	65260517	65260616	135596	0	+	0.484848	(0.476,0.515]	chr1	15341	55	INTRON	INTRON	DNAJC6	ENSG00000116675.16	ENST00000463018.5:ENST00000494710.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	99	2	1.57117	1.67933	1.78749	0.0157618	0.0148125	0.106702	0.101453
chrX	151971039	151971139	7908602	0	-	0.37	(0.35,0.378]	chrX	804812	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	GABRE	ENSG00000102287.19	ENST00000370328.4:ENST00000441219.5:ENST00000491339.1:ENST00000417300.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	15	122	2	1.48125	1.67929	1.87733	0.0159785	0.012522	0.109464	0.0925829
chr12	132802369	132802469	5449946	0	-	0.67	(0.57,1]	chr12	522068	4	SS3_PROX	SS3_PROX:INTRON	GOLGA3	ENSG00000090615.16	ENST00000204726.9:ENST00000450791.8:ENST00000693666.1:ENST00000688114.1:ENST00000687190.1:ENST00000690511.1:ENST00000685283.1:ENST00000691696.1:ENST00000691636.1:ENST00000690897.1:ENST00000690465.1:ENST00000456883.7:ENST00000692253.1:ENST00000687502.1:ENST00000688772.1:ENST00000687479.1:ENST00000690709.1:ENST00000545875.4:ENST00000688251.1:ENST00000690573.1:ENST00000685195.1:ENST00000686425.1:ENST00000693437.1:ENST00000692831.1:ENST00000688068.1:ENST00000692951.1:ENST00000689441.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	33	2	1.55956	1.67927	1.79898	0.0448639	0.0206524	0.149888	0.122348
chr3	152454644	152454743	1536858	0	+	0.363636	(0.35,0.378]	chr3	160043	54	INTRON	INTRON	MBNL1	ENSG00000152601.18	ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000324210.10:ENST00000493459.5:ENST00000545754.5:ENST00000357472.7:ENST00000324196.9:ENST00000498502.5:ENST00000463374.5:ENST00000485910.5:ENST00000465907.6:ENST00000492948.5:ENST00000485509.5:ENST00000464596.5:ENST00000478535.1:ENST00000460166.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	62	2	1.4414	1.67923	1.91706	0.0629423	0.026412	0.196658	0.122506
chr1	182846233	182846333	273046	0	+	0.49	(0.476,0.515]	chr1	31871	24	INTRON	INTRON	DHX9	ENSG00000135829.17	ENST00000367549.4:ENST00000483416.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	49	2	1.61586	1.6791800000000001	1.7425	0.0567093	0.0417334	0.185107	0.147007
chr9	72134386	72134486	4141112	0	+	0.51	(0.476,0.515]	chr9	377405	192	INTRON	INTRON	GDA	ENSG00000119125.17	ENST00000545168.5	protein_coding	protein_coding	protein_coding	protein_coding	6	49	2	1.61586	1.6791800000000001	1.7425	0.0567093	0.0417334	0.185107	0.147007
chr5	10254584	10254673	2317509	0	+	0.382022	(0.378,0.408]	chr5	224557	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CCT5	ENSG00000150753.12	ENST00000503026.5:ENST00000515390.5:ENST00000511700.1:ENST00000280326.9:ENST00000508451.1:ENST00000423695.6:ENST00000512975.5:ENST00000625723.1:ENST00000503454.5:ENST00000515676.5:ENST00000506600.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	59	2	1.29896	1.6789649999999998	2.05897	0.0575113	0.0339294	0.187655	0.134508
chr6	132796481	132796581	3222808	0	-	0.44	(0.408,0.44]	chr6	299651	1	SS5_PROX	SS5_PROX:INTRON	SLC18B1	ENSG00000146409.12	ENST00000275227.9:ENST00000647932.1:ENST00000650278.1:ENST00000650136.1:ENST00000650298.1:ENST00000367918.1:ENST00000460518.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	14	111	2	1.47066	1.6789450000000001	1.88723	0.0457145	0.00284218	0.149888	0.0493576
chr1	108959958	108960054	519144	0	-	0.4375	(0.408,0.44]	chr1	60934	4	INTRON	INTRON	CLCC1	ENSG00000121940.17	ENST00000690509.1:ENST00000687328.1:ENST00000685014.1:ENST00000685540.1:ENST00000686576.1:ENST00000688070.1:ENST00000691513.1:ENST00000686821.1:ENST00000692511.1:ENST00000689479.1:ENST00000687646.1:ENST00000687998.1:ENST00000687226.1:ENST00000693336.1:ENST00000689991.1:ENST00000687591.1:ENST00000691777.1:ENST00000690756.1:ENST00000688778.1:ENST00000685104.1:ENST00000689103.1:ENST00000687734.1:ENST00000686434.1:ENST00000685497.1:ENST00000691342.1:ENST00000686776.1:ENST00000692342.1:ENST00000689351.1:ENST00000692584.1:ENST00000692775.1:ENST00000687134.1:ENST00000675018.1:ENST00000690781.1:ENST00000691556.1:ENST00000689189.1:ENST00000687099.1:ENST00000685791.1:ENST00000687865.1:ENST00000687449.1:ENST00000688285.1:ENST00000369968.7:ENST00000674992.1:ENST00000675001.1:ENST00000369969.7:ENST00000356970.6:ENST00000688610.1:ENST00000675128.1:ENST00000693089.1:ENST00000675571.1:ENST00000675650.1:ENST00000369970.8:ENST00000674561.2:ENST00000675654.1:ENST00000675790.1:ENST00000675584.1:ENST00000692795.1:ENST00000691731.1:ENST00000689359.1:ENST00000676392.2:ENST00000676391.2:ENST00000676454.1:ENST00000674849.1:ENST00000675956.1:ENST00000302500.5:ENST00000675508.1:ENST00000688168.1:ENST00000693673.1:ENST00000692404.1:ENST00000686078.1:ENST00000690874.1:ENST00000692732.1:ENST00000685628.1:ENST00000676306.1:ENST00000676059.2:ENST00000674527.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	79	2	1.58026	1.6788750000000001	1.77749	0.0444624	0.0104439	0.149888	0.0902734
chr10	73743754	73743849	4652086	0	-	0.410526	(0.408,0.44]	chr10	428252	9	EXON_MRNA	EXON_MRNA	ENSG00000279088	ENSG00000279088.1	ENST00000625041.1	TEC	TEC	TEC	TEC	14	110	2	1.50203	1.67885	1.85567	0.0193894	0.0090746	0.119831	0.080809
chr9	121340518	121340616	4336647	0	-	0.418367	(0.408,0.44]	chr9	398479	10	UTR3	UTR3:EXON_MRNA:INTRON	STOM	ENSG00000148175.13	ENST00000286713.7:ENST00000538954.5	protein_coding	protein_coding	protein_coding	protein_coding	14	111	2	1.64214	1.67881	1.71548	0.0160792	0.0101701	0.101453	0.089002
chr4	771193	771293	2093310	0	-	0.49	(0.476,0.515]	chr4	206823	32	INTRON	INTRON	ENSG00000249592	ENSG00000249592.7	ENST00000660016.1:ENST00000665579.1:ENST00000503571.5:ENST00000652800.1:ENST00000507446.1	lncRNA	lncRNA	lncRNA	lncRNA	18	132	2	1.4491	1.67866	1.90822	0.0136408	0.00708879	0.101808	0.0722268
chr2	110662588	110662687	1206706	0	-	0.434343	(0.408,0.44]	chr2	128694	2	INTRON	INTRON	BUB1	ENSG00000169679.15	ENST00000302759.11:ENST00000535254.6:ENST00000409311.5:ENST00000466333.5:ENST00000666956.1:ENST00000465029.5:ENST00000477481.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	10	80	2	1.60905	1.67859	1.74813	0.02971	0.0163902	0.129022	0.109715
chr5	66016923	66017023	2371758	0	+	0.37	(0.35,0.378]	chr5	228522	18	INTRON	INTRON	ERBIN	ENSG00000112851.15	ENST00000380943.6:ENST00000416865.6:ENST00000380935.5:ENST00000284037.10:ENST00000380938.6:ENST00000511297.5:ENST00000506030.5:ENST00000508515.1	protein_coding	protein_coding	protein_coding	protein_coding	8	71	2	1.64283	1.67847	1.71411	0.034896	0.0310697	0.148998	0.13151
chr2	235539535	235539635	1041792	0	+	0.53	(0.515,0.57]	chr2	111222	146	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1:ENST00000402604.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	76	2	1.29901	1.67845	2.05789	0.0394428	0.00786509	0.161534	0.076155
chr12	53473386	53473484	5143116	0	+	0.336735	(0.32,0.35]	chr12	485448	12	INTRON	INTRON	PCBP2	ENSG00000197111.16	ENST00000546463.6:ENST00000437231.5:ENST00000447282.5:ENST00000359282.9:ENST00000549863.5:ENST00000359462.9:ENST00000552296.6:ENST00000552819.5:ENST00000455667.7:ENST00000439930.7:ENST00000548933.5:ENST00000562264.5:ENST00000550585.5:ENST00000553064.6:ENST00000547859.2:ENST00000547048.5:ENST00000550733.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	19	165	2	1.5859	1.6784050000000001	1.77091	0.0146308	0.00751912	0.0982604	0.0773151
chr3	10143919	10144019	1363135	0	+	0.42	(0.408,0.44]	chr3	143671	5	INTRON	INTRON	VHL	ENSG00000134086.9	ENST00000696153.1:ENST00000256474.3:ENST00000696142.1:ENST00000345392.2:ENST00000696143.1:ENST00000477538.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	10	74	2	1.43341	1.6783000000000001	1.92319	0.0302713	0.0247322	0.143025	0.12011
chr7	112784536	112784630	3624346	0	-	0.340426	(0.32,0.35]	chr7	337164	9	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	TMEM168	ENSG00000146802.13	ENST00000312814.11:ENST00000454074.5:ENST00000447395.5:ENST00000449743.1:ENST00000441474.1	protein_coding	protein_coding	protein_coding	protein_coding	15	138	2	1.59771	1.6782599999999999	1.75881	0.0216336	0.00743179	0.11491	0.0772645
chr10	812631	812729	4541366	0	-	0.316327	(0.28,0.32]	chr10	419197	33	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	LARP4B	ENSG00000107929.16	ENST00000614908.5:ENST00000688365.1:ENST00000316157.8:ENST00000690516.1:ENST00000689323.1:ENST00000688042.1:ENST00000609318.5:ENST00000690211.1:ENST00000448368.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	102	2	1.31424	1.6781549999999998	2.04207	0.0580847	0.0121395	0.188651	0.0910127
chr5	28827343	28827443	2330023	0	+	0.26	[0,0.28]	chr5	225135	168	INTRON	INTRON	LINC02109	ENSG00000259786.7	ENST00000658190.1	lncRNA	lncRNA	lncRNA	lncRNA	8	96	2	1.64178	1.6780599999999999	1.71434	0.0390996	0.0379383	0.161325	0.141416
chr7	151500968	151501068	3674736	0	-	0.33	(0.32,0.35]	chr7	341207	24	INTRON	INTRON	RHEB	ENSG00000106615.10	ENST00000262187.10:ENST00000472642.5:ENST00000478470.5:ENST00000496004.5:ENST00000470370.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	13	120	2	1.35397	1.67804	2.00211	0.0475566	0.00445465	0.153019	0.0610799
chr5	65933600	65933700	2370914	0	+	0.4	(0.378,0.408]	chr5	228472	64	INTRON	INTRON	ERBIN	ENSG00000112851.15	ENST00000380943.6:ENST00000507490.1:ENST00000416865.6:ENST00000380935.5:ENST00000284037.10:ENST00000380938.6:ENST00000511297.5:ENST00000506030.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	83	2	1.33751	1.67801	2.01851	0.0677318	0.00559022	0.18426	0.0678837
chr5	138573562	138573662	2732894	0	-	0.46	(0.44,0.476]	chr5	257489	4	SS5_PROX	SS5_PROX:INTRON	HSPA9	ENSG00000113013.16	ENST00000677693.1:ENST00000677064.1:ENST00000678300.1:ENST00000677425.1:ENST00000649578.2:ENST00000677988.1:ENST00000297185.9:ENST00000677527.1:ENST00000678794.1:ENST00000677553.1:ENST00000678384.1:ENST00000678051.1:ENST00000677066.1:ENST00000649692.2:ENST00000678551.1:ENST00000524109.2:ENST00000507115.6:ENST00000507097.5:ENST00000504902.6:ENST00000508003.2:ENST00000506477.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	12	90	2	1.55725	1.6779899999999999	1.79873	0.0223888	0.0155922	0.116918	0.109452
chr7	101944607	101944707	3367639	0	+	0.56	(0.515,0.57]	chr7	315229	116	INTRON	INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000497815.5:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000558469.5:ENST00000560541.5:ENST00000558836.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	42	2	1.60221	1.677965	1.75372	0.0581855	0.0386904	0.188704	0.14279
chr5	146147080	146147179	2747041	0	-	0.474747	(0.44,0.476]	chr5	258826	25	EXON_MRNA	EXON_MRNA:INTRON	LARS1	ENSG00000133706.19	ENST00000674174.1:ENST00000674170.1:ENST00000674479.1:ENST00000674309.1:ENST00000674218.1:ENST00000674467.1:ENST00000674290.1:ENST00000674447.1:ENST00000674270.1:ENST00000674383.1:ENST00000674191.1:ENST00000674158.1:ENST00000394434.7:ENST00000674398.1:ENST00000674277.1:ENST00000274562.13:ENST00000510191.5:ENST00000674310.1:ENST00000512412.2:ENST00000508667.5:ENST00000507095.1:ENST00000674417.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	78	2	1.24699	1.6779549999999999	2.10892	0.0484245	0.0132897	0.172383	0.0944742
chr5	27486341	27486438	2329732	0	+	0.391753	(0.378,0.408]	chr5	225117	3	INTRON	INTRON	PURPL	ENSG00000250337.8	ENST00000651409.1:ENST00000650981.1:ENST00000655107.1:ENST00000657375.2:ENST00000659077.1:ENST00000653835.1:ENST00000657173.1:ENST00000514844.6:ENST00000657424.1:ENST00000660307.1:ENST00000669423.1:ENST00000652841.1:ENST00000686605.1:ENST00000690628.1:ENST00000510165.6:ENST00000670554.1:ENST00000665451.1:ENST00000667624.1:ENST00000667420.1:ENST00000660639.1:ENST00000668406.1:ENST00000656783.1:ENST00000664566.1:ENST00000659489.1:ENST00000667264.1:ENST00000654039.1:ENST00000505775.5:ENST00000668103.1:ENST00000664501.1:ENST00000661698.1:ENST00000655438.1:ENST00000658312.1	lncRNA	lncRNA	lncRNA	lncRNA	12	99	2	1.64906	1.67786	1.70666	0.0203406	0.0140577	0.110499	0.102916
chr6	15392637	15392737	2824414	0	+	0.39	(0.378,0.408]	chr6	265198	180	INTRON	INTRON	JARID2	ENSG00000008083.14	ENST00000341776.7:ENST00000397311.4	protein_coding	protein_coding	protein_coding	protein_coding	12	99	2	1.64906	1.67786	1.70666	0.0203406	0.0140577	0.110499	0.102916
chr19	4418974	4419074	7001927	0	+	0.41	(0.408,0.44]	chr19	694529	5	INTRON	INTRON	CHAF1A	ENSG00000167670.16	ENST00000301280.10:ENST00000587739.1:ENST00000585371.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	57	2	1.53812	1.677855	1.81759	0.0501609	0.0316273	0.156383	0.144405
chr6	15252861	15252961	2823014	0	+	0.41	(0.408,0.44]	chr6	265190	35	INTRON	INTRON	JARID2	ENSG00000008083.14	ENST00000341776.7:ENST00000397311.4	protein_coding	protein_coding	protein_coding	protein_coding	11	79	2	1.34899	1.6776399999999998	2.00629	0.0342016	0.0189661	0.146891	0.108861
chrX	123977988	123978088	7716915	0	+	0.47	(0.44,0.476]	chrX	789462	142	INTRON	INTRON	STAG2	ENSG00000101972.20	ENST00000394477.5:ENST00000218089.13:ENST00000455404.5:ENST00000483575.5:ENST00000687810.1:ENST00000687071.1:ENST00000469481.1:ENST00000458700.5:ENST00000371160.5:ENST00000435103.5:ENST00000687852.1:ENST00000371145.8:ENST00000692982.1:ENST00000371157.7:ENST00000691035.1:ENST00000686802.1:ENST00000691383.1:ENST00000686127.1:ENST00000371144.7:ENST00000458176.5:ENST00000466748.5:ENST00000471107.1:ENST00000428941.5:ENST00000435215.5:ENST00000394478.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	62	2	1.4962	1.6776200000000001	1.85904	0.0392301	0.029889	0.161534	0.129138
chr9	37146373	37146471	4117917	0	+	0.326531	(0.32,0.35]	chr9	375376	10	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000322831.6:ENST00000461038.5:ENST00000488607.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	73	2	1.54135	1.6776149999999999	1.81388	0.0371014	0.0353776	0.150752	0.139201
chr19	34447199	34447297	7053315	0	+	0.44898	(0.44,0.476]	chr19	703531	17	INTRON	INTRON	UBA2	ENSG00000126261.13	ENST00000586313.1:ENST00000590048.6:ENST00000246548.9:ENST00000439527.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	64	2	1.42812	1.67758	1.92704	0.0673866	0.0128054	0.183355	0.0990564
chr9	131145047	131145144	4215823	0	+	0.443299	(0.44,0.476]	chr9	386559	4	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	NUP214	ENSG00000126883.19	ENST00000695497.1:ENST00000695498.1:ENST00000695496.1:ENST00000695495.1:ENST00000695494.1:ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000525561.2:ENST00000651022.1:ENST00000530863.1:ENST00000525980.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	51	396	2	1.57668	1.67757	1.77846	0.00267987	0.00145028	0.0478767	0.0343791
chr9	131181591	131181690	4216205	0	+	0.313131	(0.28,0.32]	chr9	386630	28	INTRON	INTRON	NUP214	ENSG00000126883.19	ENST00000695497.1:ENST00000695498.1:ENST00000695496.1:ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000525980.5:ENST00000526346.5:ENST00000531929.5:ENST00000651334.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	102	2	1.45235	1.67736	1.90237	0.0543728	0.0104138	0.164972	0.0901622
chr16	9108326	9108425	6285539	0	+	0.363636	(0.35,0.378]	chr16	601929	52	UTR3	UTR3:EXON_MRNA:INTRON	C16orf72	ENSG00000182831.12	ENST00000327827.12:ENST00000574285.2	protein_coding	protein_coding	protein_coding	protein_coding	36	255	2	1.10156	1.677345	2.25313	0.027531	9.9587e-4	0.137011	0.0288906
chr11	34094829	34094928	4768099	0	+	0.373737	(0.35,0.378]	chr11	441022	24	INTRON	INTRON	CAPRIN1	ENSG00000135387.21	ENST00000341394.9:ENST00000528856.5:ENST00000389645.7:ENST00000532820.5:ENST00000530820.5:ENST00000529307.1:ENST00000533657.5:ENST00000528948.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	109	2	1.52819	1.677335	1.82648	0.0182094	0.0150408	0.115242	0.0994339
chr1	19188729	19188828	386611	0	-	0.494949	(0.476,0.515]	chr1	46093	8	INTRON	INTRON	UBR4	ENSG00000127481.15	ENST00000375254.8	protein_coding	protein_coding	protein_coding	protein_coding	14	99	2	1.20452	1.677205	2.14989	0.04391	0.00611105	0.162255	0.0676501
chr3	6572966	6573066	1356972	0	+	0.25	[0,0.28]	chr3	142512	143	INTRON	INTRON	ENSG00000189229	ENSG00000189229.12	ENST00000433639.1:ENST00000655754.1:ENST00000653839.1:ENST00000662846.1:ENST00000414438.2:ENST00000658468.1:ENST00000669512.1:ENST00000667028.1:ENST00000655541.1:ENST00000668643.1:ENST00000671568.1:ENST00000671036.1:ENST00000669798.1:ENST00000655753.1:ENST00000655856.1:ENST00000658398.1:ENST00000661518.1:ENST00000661279.1:ENST00000655495.1:ENST00000663041.1:ENST00000659827.1:ENST00000667716.1:ENST00000662508.1:ENST00000668416.1:ENST00000658133.1:ENST00000342990.4:ENST00000660054.1:ENST00000671370.1	lncRNA	lncRNA	lncRNA	lncRNA	21	249	2	1.64886	1.67712	1.70538	0.0129085	0.00977975	0.0927913	0.0877296
chr19	1037997	1038094	6993288	0	+	0.556701	(0.515,0.57]	chr19	692537	2	UTR3	UTR3:EXON_MRNA	CNN2	ENSG00000064666.15	ENST00000263097.9:ENST00000348419.7:ENST00000565096.6:ENST00000562958.6:ENST00000568865.3:ENST00000564572.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	23	153	2	1.1075	1.67701	2.24652	0.0423561	4.37316e-4	0.161744	0.0192086
chr3	160401326	160401414	1544608	0	+	0.386364	(0.378,0.408]	chr3	160664	4	SS5_PROX	SS5_PROX:INTRON	SMC4	ENSG00000113810.16	ENST00000497311.5:ENST00000465903.5:ENST00000485645.5:ENST00000472282.5:ENST00000472991.5:ENST00000357388.8:ENST00000469762.5:ENST00000468653.5:ENST00000467468.5:ENST00000469858.5:ENST00000489573.5:ENST00000462787.5:ENST00000485867.5:ENST00000490207.5:ENST00000344722.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	21	168	2	1.67146	1.676945	1.68243	0.0102573	0.00473731	0.0850389	0.0634442
chr5	66168464	66168563	2372741	0	+	0.434343	(0.408,0.44]	chr5	228682	37	EXON_MRNA	EXON_MRNA:INTRON	SREK1	ENSG00000153914.16	ENST00000334121.11:ENST00000520953.5:ENST00000522912.5:ENST00000524111.5:ENST00000380918.7:ENST00000284041.7:ENST00000520580.5:ENST00000519259.5:ENST00000523655.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	57	2	1.29431	1.6768900000000002	2.05947	0.0580322	0.0333232	0.188651	0.134145
chr7	121026826	121026926	3394019	0	+	0.45	(0.44,0.476]	chr7	317682	106	INTRON	INTRON	CPED1	ENSG00000106034.18	ENST00000340646.9:ENST00000310396.10:ENST00000428526.5:ENST00000495036.5:ENST00000450913.6:ENST00000520801.5:ENST00000521774.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	62	2	1.44993	1.67687	1.90381	0.045367	0.0260626	0.164236	0.122153
chr10	101809485	101809584	4680885	0	-	0.464646	(0.44,0.476]	chr10	432006	12	INTRON	INTRON	OGA	ENSG00000198408.14	ENST00000439817.5:ENST00000361464.8:ENST00000357797.9:ENST00000370094.7:ENST00000429860.1	protein_coding	protein_coding	protein_coding	protein_coding	9	71	2	1.66775	1.6766	1.68545	0.0322071	0.0219883	0.132543	0.123836
chr10	74547489	74547589	4459743	0	+	0.51	(0.476,0.515]	chr10	411593	190	INTRON	INTRON	ADK	ENSG00000156110.15	ENST00000672429.1:ENST00000539909.6:ENST00000286621.7:ENST00000673352.1:ENST00000673310.1:ENST00000672920.1:ENST00000672394.1:ENST00000372734.5:ENST00000673027.1:ENST00000541550.6:ENST00000672604.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	72	2	1.38864	1.6765050000000001	1.96437	0.0547008	0.0124351	0.182743	0.0920366
chr10	32011131	32011227	4590345	0	-	0.3125	(0.28,0.32]	chr10	423181	23	UTR3	UTR3:EXON_MRNA	KIF5B	ENSG00000170759.11	ENST00000302418.5	protein_coding	protein_coding	protein_coding	protein_coding	10	100	2	1.53798	1.67645	1.81492	0.0287839	0.0253829	0.140044	0.12011
chr3	196063623	196063715	1897357	0	-	0.521739	(0.515,0.57]	chr3	189929	3	INTRON	INTRON	TFRC	ENSG00000072274.13	ENST00000420415.5:ENST00000360110.9:ENST00000392396.7:ENST00000464368.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	66	432	2	1.42297	1.676255	1.92954	0.00562336	1.43825e-4	0.0653997	0.0104185
chr8	18001781	18001881	3708559	0	+	0.37	(0.35,0.378]	chr8	343990	78	INTRON	INTRON	PCM1	ENSG00000078674.19	ENST00000325083.13:ENST00000519253.5:ENST00000524226.5:ENST00000522275.5	protein_coding	protein_coding	protein_coding	protein_coding	9	78	2	1.33846	1.67612	2.01378	0.0687435	0.00952336	0.184298	0.0863913
chr14	31003259	31003358	5857642	0	-	0.191919	[0,0.28]	chr14	556508	389	INTRON	INTRON	STRN3	ENSG00000196792.12	ENST00000355683.9:ENST00000357479.10:ENST00000555358.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	92	2	1.65319	1.67607	1.69895	0.0568939	0.0275612	0.167723	0.137011
chr16	22498786	22498886	6322593	0	+	0.47	(0.44,0.476]	chr16	605439	66	INTRON	INTRON	NPIPB5	ENSG00000243716.11	ENST00000415654.5:ENST00000415833.6:ENST00000546168.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	23	166	2	1.13818	1.6760549999999999	2.21393	0.040185	9.35634e-4	0.14394	0.0279269
chr16	23917240	23917340	6324573	0	+	0.48	(0.476,0.515]	chr16	605701	235	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000498739.1	protein_coding	protein_coding	protein_coding	protein_coding	10	78	2	1.32251	1.6757	2.02889	0.0533705	0.00978617	0.179876	0.0835427
chr11	85988853	85988952	5014019	0	-	0.373737	(0.35,0.378]	chr11	472941	45	INTRON	INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000530692.5:ENST00000630913.2:ENST00000529760.5:ENST00000528398.5:ENST00000356360.9:ENST00000529016.5:ENST00000526961.5:ENST00000530542.1	protein_coding	protein_coding	protein_coding	protein_coding	9	78	2	1.3017	1.675685	2.04967	0.0757564	0.00827328	0.194427	0.0813266
chr11	57761970	57762057	4793131	0	+	0.425287	(0.408,0.44]	chr11	443706	3	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	ENSG00000288534:CTNND1	ENSG00000288534.1:ENSG00000198561.16	ENST00000673781.1:ENST00000673810.1:ENST00000674116.1:ENST00000674060.1:ENST00000524630.5:ENST00000529919.5:ENST00000533189.1:ENST00000682741.1:ENST00000358694.10:ENST00000361332.8:ENST00000361391.10:ENST00000361796.9:ENST00000415361.6:ENST00000426142.6:ENST00000428599.6:ENST00000525902.5:ENST00000526357.5:ENST00000526772.5:ENST00000527467.5:ENST00000528232.5:ENST00000528621.5:ENST00000529526.5:ENST00000529873.5:ENST00000529986.5:ENST00000530094.5:ENST00000530748.5:ENST00000531014.5:ENST00000532245.5:ENST00000532463.5:ENST00000532649.5:ENST00000532787.5:ENST00000532844.5:ENST00000533667.5:ENST00000534579.5:ENST00000399050.10:ENST00000526938.5:ENST00000531007.2:ENST00000674015.1:ENST00000673826.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	15	105	2	1.19625	1.67566	2.15507	0.0407449	0.00618525	0.161534	0.0677395
chr9	135943368	135943464	4372380	0	-	0.34375	(0.32,0.35]	chr9	402520	7	INTRON	INTRON	UBAC1	ENSG00000130560.9	ENST00000371756.4:ENST00000489050.5:ENST00000465873.5:ENST00000471163.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	28	256	2	1.61366	1.6756199999999999	1.73758	0.00868279	0.00328237	0.0788404	0.0527031
chr17	39200282	39200344	6606931	0	+	0.677419	(0.57,1]	chr17	643230	1	UTR5	UTR5:EXON_MRNA	RPL19	ENSG00000108298.12	ENST00000678147.1:ENST00000225430.9:ENST00000678609.1:ENST00000679038.1:ENST00000579374.5:ENST00000678012.1:ENST00000577741.2:ENST00000579260.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	23	83	2	1.51598	1.675615	1.83525	0.0110377	0.00407069	0.0873897	0.058009
chr22	20118135	20118224	7478591	0	+	0.674157	(0.57,1]	chr22	762774	5	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	RANBP1	ENSG00000099901.17	ENST00000435265.5:ENST00000432879.5:ENST00000430524.6:ENST00000402752.5:ENST00000488484.1:ENST00000331821.7:ENST00000411892.5:ENST00000467920.1:ENST00000416427.5:ENST00000421656.5:ENST00000423859.5:ENST00000418705.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	40	2	1.34554	1.6756000000000002	2.00566	0.0508971	0.00889324	0.176247	0.0798039
chr2	70228462	70228562	1152262	0	-	0.33	(0.32,0.35]	chr2	123088	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	C2orf42:TIA1	ENSG00000115998.8:ENSG00000116001.17	ENST00000470096.1:ENST00000415783.6:ENST00000433529.7:ENST00000282574.8:ENST00000445587.5:ENST00000454815.6:ENST00000416149.6:ENST00000474809.6:ENST00000477044.6:ENST00000361692.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	14	118	2	1.40439	1.67554	1.94669	0.0226094	0.0154073	0.124921	0.100659
chr4	78787903	78788003	1981500	0	+	0.36	(0.35,0.378]	chr4	198463	108	INTRON	INTRON	BMP2K	ENSG00000138756.19	ENST00000389010.7:ENST00000502613.3:ENST00000502871.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	102	2	1.63191	1.67549	1.71907	0.0218101	0.0149226	0.11491	0.107378
chr1	43406028	43406105	84887	0	+	0.441558	(0.44,0.476]	chr1	11224	2	SS3_PROX	SS3_PROX:INTRON	SZT2	ENSG00000198198.17	ENST00000372450.8:ENST00000562955.2:ENST00000634258.3:ENST00000406439.7:ENST00000357658.4:ENST00000639852.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	41	2	1.49942	1.67544	1.85146	0.0792118	0.0545846	0.199574	0.182529
chr7	73571682	73571782	3555374	0	-	0.47	(0.44,0.476]	chr7	330877	2	EXON_LNCRNA	EXON_LNCRNA:SS3_PROX:INTRON	TBL2	ENSG00000106638.18	ENST00000305632.11:ENST00000450285.5:ENST00000424598.5:ENST00000459913.5:ENST00000417008.5:ENST00000432538.5:ENST00000433464.5:ENST00000426966.5:ENST00000452475.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	41	2	1.49942	1.67544	1.85146	0.0792118	0.0545846	0.199574	0.182529
chr5	28922816	28922916	2330978	0	+	0.36	(0.35,0.378]	chr5	225135	1123	INTRON	INTRON	LINC02109	ENSG00000259786.7	ENST00000658190.1	lncRNA	lncRNA	lncRNA	lncRNA	8	69	2	1.3743	1.67538	1.97646	0.0623871	0.0193942	0.175402	0.119831
chr11	68466716	68466816	4817392	0	+	0.51	(0.476,0.515]	chr11	448907	55	INTRON	INTRON	PPP6R3	ENSG00000110075.15	ENST00000530427.5:ENST00000528635.5:ENST00000529907.5:ENST00000533127.5:ENST00000534534.5:ENST00000529344.5:ENST00000524845.5:ENST00000393800.7:ENST00000265637.8:ENST00000524904.5:ENST00000393801.7:ENST00000265636.9:ENST00000529710.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	72	2	1.6612	1.675135	1.68907	0.0296007	0.0245383	0.142135	0.12011
chr1	92761012	92761112	507928	0	-	0.42	(0.408,0.44]	chr1	59886	240	INTRON	INTRON	EVI5	ENSG00000067208.16	ENST00000370331.5:ENST00000540033.2:ENST00000684568.2:ENST00000474806.1:ENST00000466778.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	49	2	1.53263	1.67511	1.81759	0.0733439	0.0316273	0.190051	0.144405
chr12	104489010	104489110	5211004	0	+	0.43	(0.408,0.44]	chr12	493315	311	INTRON	INTRON	CHST11	ENSG00000171310.11	ENST00000303694.6:ENST00000547956.1:ENST00000549260.5:ENST00000546689.1	protein_coding	protein_coding	protein_coding	protein_coding	6	49	2	1.53263	1.67511	1.81759	0.0733439	0.0316273	0.190051	0.144405
chr17	37217050	37217149	6761103	0	-	0.484848	(0.476,0.515]	chr17	664773	62	INTRON	INTRON	ACACA	ENSG00000278540.5	ENST00000616317.5:ENST00000614428.4:ENST00000612895.4:ENST00000617649.4:ENST00000614450.4:ENST00000612120.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	79	2	1.56702	1.6750850000000002	1.78315	0.0257979	0.0215899	0.123836	0.121115
chr20	5564616	5564716	7311862	0	-	0.45	(0.44,0.476]	chr20	744533	2	SS5_PROX	SS5_PROX:INTRON	GPCPD1	ENSG00000125772.14	ENST00000379019.7:ENST00000481038.5:ENST00000418646.5:ENST00000633552.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	73	2	1.36075	1.675065	1.98938	0.0389168	0.0198602	0.160783	0.109608
chr4	65642	65742	1905413	0	+	0.46	(0.44,0.476]	chr4	191003	51	INTRON	INTRON	ZNF595	ENSG00000272602.6	ENST00000608255.2:ENST00000609518.5:ENST00000509152.3:ENST00000610261.6	protein_coding	protein_coding	protein_coding	protein_coding	12	93	2	1.32592	1.675065	2.02421	0.0472287	0.00536295	0.152684	0.0663076
chr4	139160779	139160879	2247183	0	-	0.47	(0.44,0.476]	chr4	219601	209	INTRON	INTRON	ELF2	ENSG00000109381.21	ENST00000394235.6:ENST00000686138.1:ENST00000511184.5:ENST00000511006.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	73	2	1.36075	1.675065	1.98938	0.0389168	0.0198602	0.160783	0.109608
chr7	131419385	131419484	3417365	0	+	0.474747	(0.44,0.476]	chr7	319231	43	INTRON	INTRON	MKLN1	ENSG00000128585.18	ENST00000421797.6:ENST00000352689.11:ENST00000494785.5:ENST00000458153.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	66	2	1.21196	1.674875	2.13779	0.0542558	0.0264596	0.182243	0.122506
chr9	136837045	136837145	4222045	0	+	0.55	(0.515,0.57]	chr9	387713	13	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	RABL6	ENSG00000196642.19	ENST00000311502.12:ENST00000484471.6:ENST00000371663.10:ENST00000357466.6:ENST00000464941.5:ENST00000629216.2:ENST00000461992.1:ENST00000435930.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	53	2	1.32981	1.674795	2.01978	0.0640038	0.0165522	0.199279	0.102621
chr16	23839202	23839301	6323790	0	+	0.323232	(0.32,0.35]	chr16	605693	14	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000498058.1:ENST00000645517.1:ENST00000498739.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	102	2	1.24518	1.67476	2.10434	0.0754551	0.00423324	0.194427	0.0595557
chr16	22506235	22506335	6322669	0	+	0.5	(0.476,0.515]	chr16	605445	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	NPIPB5	ENSG00000243716.11	ENST00000415654.5:ENST00000415833.6:ENST00000546168.5:ENST00000543407.5:ENST00000356156.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	14	111	2	1.66417	1.6745700000000001	1.68497	0.0164481	0.0107474	0.110077	0.0866159
chr3	185928390	185928488	1886505	0	-	0.357143	(0.35,0.378]	chr3	188632	18	EXON_MRNA	EXON_MRNA:INTRON	TRA2B	ENSG00000136527.19	ENST00000453386.7:ENST00000492417.5:ENST00000487615.5:ENST00000456380.5:ENST00000382191.4:ENST00000465245.1:ENST00000485530.5:ENST00000477939.1:ENST00000471134.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	21	180	2	1.5548	1.674555	1.79431	0.0119453	0.00481603	0.0899583	0.063849
chr10	74109850	74109948	4455643	0	+	0.336735	(0.32,0.35]	chr10	411497	3	INTRON	INTRON	VCL	ENSG00000035403.18	ENST00000623461.3:ENST00000372755.7:ENST00000624354.3:ENST00000211998.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	14	129	2	1.44744	1.6745450000000002	1.90165	0.0356123	0.00508454	0.138061	0.0646039
chr6	43784823	43784921	2872215	0	+	0.397959	(0.378,0.408]	chr6	272368	3	UTR3	UTR3:EXON_MRNA	VEGFA	ENSG00000112715.26	ENST00000672860.3:ENST00000372067.8:ENST00000425836.8:ENST00000372064.9:ENST00000372077.8:ENST00000520948.5:ENST00000523950.5:ENST00000230480.10:ENST00000480614.1:ENST00000497139.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	52	414	2	1.49148	1.674465	1.85745	0.00884802	3.99663e-4	0.0794415	0.0179547
chr12	121311207	121311307	5436752	0	-	0.4	(0.378,0.408]	chr12	519847	8	INTRON	INTRON	ANAPC5	ENSG00000089053.13	ENST00000261819.8:ENST00000535641.5:ENST00000541887.5:ENST00000534976.5:ENST00000441917.6:ENST00000539079.5:ENST00000544314.5:ENST00000535482.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	16	129	2	1.61107	1.67439	1.73771	0.011556	0.0105	0.0907259	0.0889104
chr19	19420316	19420416	7035492	0	+	0.52	(0.515,0.57]	chr19	701433	139	INTRON	INTRON	GATAD2A	ENSG00000167491.18	ENST00000494516.6:ENST00000360315.7:ENST00000609040.5:ENST00000417582.6:ENST00000683918.1:ENST00000448576.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	12	80	2	1.54399	1.67423	1.80447	0.0259541	0.00879341	0.121732	0.084878
chr10	71823896	71823996	4642558	0	-	0.34	(0.32,0.35]	chr10	427140	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	PSAP	ENSG00000197746.15	ENST00000394936.8:ENST00000633965.1	protein_coding	protein_coding	protein_coding	protein_coding	9	72	2	1.25832	1.674185	2.09005	0.0563972	0.0330483	0.184423	0.133816
chr10	21548926	21549026	4404556	0	+	0.39	(0.378,0.408]	chr10	406427	72	INTRON	INTRON	MLLT10	ENSG00000078403.17	ENST00000651097.1:ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000377100.8:ENST00000377091.7:ENST00000650772.1:ENST00000651298.1:ENST00000652497.1:ENST00000495130.5:ENST00000377059.7:ENST00000621220.4:ENST00000476557.5:ENST00000462999.5:ENST00000430455.2:ENST00000479634.1:ENST00000480415.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	58	2	1.63458	1.67416	1.71374	0.0573057	0.0274158	0.167723	0.136498
chr4	55872058	55872158	1961375	0	+	0.39	(0.378,0.408]	chr4	196636	1	SS5_PROX	SS5_PROX:INTRON	EXOC1	ENSG00000090989.18	ENST00000381295.7:ENST00000346134.11:ENST00000349598.6	protein_coding	protein_coding	protein_coding	protein_coding	7	58	2	1.63458	1.67416	1.71374	0.0573057	0.0274158	0.167723	0.136498
chr2	87468452	87468551	826051	0	+	0.464646	(0.44,0.476]	chr2	92409	100	INTRON	INTRON	CYTOR:ENSG00000284879	ENSG00000222041.12:ENSG00000284879.1	ENST00000642796.1:ENST00000643589.1:ENST00000642451.1:ENST00000646386.1:ENST00000644478.1:ENST00000409139.6:ENST00000331944.10:ENST00000644125.1:ENST00000643743.1:ENST00000644577.1:ENST00000643276.1:ENST00000409898.2:ENST00000419680.6:ENST00000645257.1:ENST00000644976.1:ENST00000643070.1:ENST00000646855.1:ENST00000414584.1:ENST00000455131.5:ENST00000646636.1:ENST00000642293.1:ENST00000423846.5:ENST00000644040.1:ENST00000645138.1	lncRNA	lncRNA	lncRNA	lncRNA	13	102	2	1.52722	1.67414	1.82106	0.0201407	0.0124107	0.109913	0.0973643
chr2	111466712	111466812	1211520	0	-	0.51	(0.476,0.515]	chr2	128913	41	INTRON	INTRON	MIR4435-2HG	ENSG00000172965.17	ENST00000645030.2:ENST00000642191.1:ENST00000673798.1:ENST00000645051.2:ENST00000673649.1:ENST00000669658.1:ENST00000669917.1:ENST00000661559.1:ENST00000653687.1:ENST00000667670.1:ENST00000609220.2:ENST00000656760.1:ENST00000609902.6:ENST00000666683.1:ENST00000674070.1:ENST00000662335.1:ENST00000664422.1:ENST00000673775.1:ENST00000674092.1:ENST00000673958.1:ENST00000658936.1:ENST00000662635.1:ENST00000666204.1:ENST00000659458.1:ENST00000664443.1:ENST00000670295.1:ENST00000661655.1:ENST00000666390.1:ENST00000659079.1:ENST00000660442.1:ENST00000664009.1:ENST00000439362.6:ENST00000654473.1:ENST00000664999.1:ENST00000673728.1:ENST00000659791.1:ENST00000666144.1:ENST00000659933.1:ENST00000670715.1:ENST00000653568.1:ENST00000643013.1:ENST00000673866.1:ENST00000443467.6:ENST00000669875.1:ENST00000673653.1:ENST00000673988.1:ENST00000661945.1:ENST00000669515.1:ENST00000431385.6:ENST00000656416.1:ENST00000674037.1:ENST00000432818.5:ENST00000674013.1:ENST00000444301.5:ENST00000673964.1:ENST00000673845.1:ENST00000673756.1:ENST00000673960.1:ENST00000673804.1:ENST00000673632.1:ENST00000453478.2:ENST00000673937.1:ENST00000673654.1:ENST00000409569.2:ENST00000674087.1:ENST00000419736.5:ENST00000673840.1:ENST00000674045.1:ENST00000673821.1:ENST00000643766.1:ENST00000308604.5:ENST00000604981.5:ENST00000673894.1:ENST00000442293.5:ENST00000441075.1	lncRNA	lncRNA	lncRNA	lncRNA	10	77	2	1.5222	1.674075	1.82595	0.0276881	0.0202339	0.137011	0.109955
chr18	722271	722369	6939789	0	-	0.387755	(0.378,0.408]	chr18	686450	8	UTR3	UTR3:EXON_MRNA	YES1	ENSG00000176105.14	ENST00000584307.5:ENST00000314574.5:ENST00000577961.5	protein_coding	protein_coding	protein_coding	protein_coding	11	92	2	1.42205	1.6739199999999999	1.92579	0.0390695	0.00998976	0.161228	0.0843858
chr15	80064617	80064716	6071082	0	+	0.444444	(0.44,0.476]	chr15	578304	35	INTRON	INTRON	ZFAND6	ENSG00000086666.19	ENST00000613266.4:ENST00000561060.5:ENST00000559157.5:ENST00000261749.11:ENST00000561012.5:ENST00000564367.5:ENST00000558494.5:ENST00000618205.4:ENST00000560470.5	protein_coding	protein_coding	protein_coding	protein_coding	9	71	2	1.42079	1.673915	1.92704	0.0526065	0.0128054	0.160978	0.0990564
chr19	11117398	11117498	7017114	0	+	0.41	(0.408,0.44]	chr19	697484	4	SS5_PROX	SS5_PROX:INTRON	LDLR	ENSG00000130164.14	ENST00000557933.5:ENST00000558518.6:ENST00000545707.5:ENST00000535915.5:ENST00000455727.6:ENST00000558013.5:ENST00000252444.9:ENST00000559340.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	26	202	2	1.56379	1.6737899999999999	1.78379	0.00933362	0.00239565	0.0817766	0.0451355
chr1	10481792	10481892	23044	0	+	0.39	(0.378,0.408]	chr1	2497	64	INTRON	INTRON	PEX14	ENSG00000142655.13	ENST00000472851.1:ENST00000356607.9:ENST00000491661.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	43	2	1.53052	1.673685	1.81685	0.0744544	0.0597868	0.192012	0.189982
chr20	34614244	34614343	7330509	0	-	0.393939	(0.378,0.408]	chr20	746633	253	INTRON	INTRON	PIGU	ENSG00000101464.11	ENST00000217446.8:ENST00000374820.6:ENST00000438215.1:ENST00000480175.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	43	2	1.53052	1.673685	1.81685	0.0744544	0.0597868	0.192012	0.189982
chr10	101788220	101788319	4680657	0	-	0.474747	(0.44,0.476]	chr10	431944	3	INTRON	INTRON	OGA	ENSG00000198408.14	ENST00000439817.5:ENST00000361464.8:ENST00000357797.9:ENST00000482611.5:ENST00000494347.5:ENST00000479811.5:ENST00000461645.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	79	2	1.42079	1.6735	1.92621	0.0526065	0.00813281	0.160978	0.0810802
chr7	10739598	10739698	3484176	0	-	0.34	(0.32,0.35]	chr7	325772	1777	INTRON	INTRON	MGC4859	ENSG00000283117.1	ENST00000634803.1	lncRNA	lncRNA	lncRNA	lncRNA	11	102	2	1.46679	1.6735	1.88021	0.0497695	0.00751788	0.156383	0.0773151
chr9	131167812	131167911	4216064	0	+	0.343434	(0.32,0.35]	chr9	386613	33	INTRON	INTRON	NUP214	ENSG00000126883.19	ENST00000695497.1:ENST00000695498.1:ENST00000695496.1:ENST00000695495.1:ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000525980.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	19	170	2	1.32085	1.673375	2.0259	0.0310838	0.00288146	0.13151	0.0494641
chr4	70910744	70910844	1970589	0	+	0.37	(0.35,0.378]	chr4	197571	78	INTRON	INTRON	MOB1B	ENSG00000173542.9	ENST00000502869.5:ENST00000509041.5:ENST00000309395.7:ENST00000396051.2:ENST00000511449.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	27	205	2	1.41566	1.67315	1.93064	0.00906256	0.005615	0.0854289	0.065373
chr17	82466988	82467086	6692348	0	+	0.438776	(0.408,0.44]	chr17	654561	22	INTRON	INTRON	NARF	ENSG00000141562.19	ENST00000579198.5:ENST00000390006.8:ENST00000583181.5:ENST00000584192.5:ENST00000580296.5:ENST00000345415.11:ENST00000581202.5:ENST00000374611.9:ENST00000457415.7:ENST00000581795.5:ENST00000584411.5:ENST00000577812.5:ENST00000581743.5:ENST00000577432.5:ENST00000582907.5:ENST00000309794.16:ENST00000578082.5:ENST00000580748.1:ENST00000577410.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	64	492	2	1.45513	1.67312	1.89111	0.00624237	3.1159e-4	0.068321	0.0158489
chr16	56838993	56839093	6361010	0	+	0.36	(0.35,0.378]	chr16	610562	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NUP93	ENSG00000102900.13	ENST00000308159.10:ENST00000569842.5:ENST00000564887.5:ENST00000542526.5:ENST00000563405.1:ENST00000563486.1:ENST00000569322.1	protein_coding	protein_coding	protein_coding	protein_coding	7	61	2	1.6122	1.67305	1.7339	0.0616849	0.0260366	0.174021	0.133676
chr3	43704376	43704475	1410314	0	+	0.383838	(0.378,0.408]	chr3	147937	14	INTRON	INTRON	ABHD5	ENSG00000011198.10	ENST00000643520.1:ENST00000458276.7:ENST00000649763.1:ENST00000643140.1:ENST00000643500.1:ENST00000644371.2:ENST00000013894.3:ENST00000646378.1:ENST00000643477.1:ENST00000646799.1:ENST00000454293.2:ENST00000642351.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	11	81	2	1.2437	1.6729100000000001	2.10212	0.049286	0.0141232	0.174117	0.0959618
chrX	41340545	41340635	7645715	0	+	0.4	(0.378,0.408]	chrX	782500	7	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	DDX3X	ENSG00000215301.11	ENST00000625837.2:ENST00000626301.2:ENST00000629785.2:ENST00000630255.2:ENST00000630370.2:ENST00000630858.2:ENST00000629496.3:ENST00000610559.5:ENST00000611546.2:ENST00000478993.5:ENST00000457138.7:ENST00000644876.2:ENST00000399959.7:ENST00000644074.1:ENST00000645338.1:ENST00000646196.1:ENST00000642793.1:ENST00000646940.1:ENST00000644307.1:ENST00000645561.1:ENST00000645080.1:ENST00000642597.1:ENST00000642722.1:ENST00000644109.1:ENST00000644958.1:ENST00000646122.1:ENST00000644513.1:ENST00000645589.1:ENST00000441189.4:ENST00000646822.1:ENST00000631641.2:ENST00000615742.4:ENST00000647219.1:ENST00000646223.1:ENST00000643963.1:ENST00000646319.1:ENST00000645783.1:ENST00000642624.1:ENST00000542215.5:ENST00000644073.1:ENST00000644677.1:ENST00000615313.5:ENST00000642322.1:ENST00000622198.5:ENST00000645120.1:ENST00000646107.1:ENST00000646627.1:ENST00000645253.1:ENST00000642589.1:ENST00000645380.1:ENST00000646390.1:ENST00000642424.1:ENST00000642161.1:ENST00000645574.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	81	2	1.2437	1.6729100000000001	2.10212	0.049286	0.0141232	0.174117	0.0959618
chr5	179729742	179729842	2561023	0	+	0.34	(0.32,0.35]	chr5	244959	12	UTR3	UTR3:EXON_MRNA	CANX	ENSG00000127022.16	ENST00000681674.1:ENST00000681712.1:ENST00000681903.1:ENST00000680406.1:ENST00000502296.6:ENST00000452673.6:ENST00000679719.1:ENST00000679523.1:ENST00000679395.1:ENST00000681504.1:ENST00000679642.1:ENST00000681894.1:ENST00000680504.1:ENST00000681265.1:ENST00000680894.1:ENST00000680812.1:ENST00000680614.1:ENST00000680985.1:ENST00000680837.1:ENST00000680827.1:ENST00000681576.1:ENST00000680984.1:ENST00000680042.1:ENST00000681762.1:ENST00000681476.1:ENST00000681072.1:ENST00000247461.9:ENST00000513246.6:ENST00000680618.1:ENST00000680092.1:ENST00000506654.6:ENST00000681733.1:ENST00000679471.1:ENST00000679527.1:ENST00000680006.1:ENST00000681398.1:ENST00000681431.1:ENST00000680013.1:ENST00000681076.1:ENST00000681168.1:ENST00000681342.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	32	262	2	1.12852	1.67286	2.2172	0.0298184	0.00110569	0.142135	0.0306086
chr19	34375802	34375902	7052593	0	+	0.54	(0.515,0.57]	chr19	703374	67	INTRON	INTRON	GPI	ENSG00000105220.17	ENST00000415930.8:ENST00000588991.7:ENST00000592144.5:ENST00000590375.5:ENST00000356487.11:ENST00000589399.6:ENST00000591204.5:ENST00000589640.5:ENST00000647446.1:ENST00000586425.2:ENST00000643067.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	54	2	1.56681	1.6728450000000001	1.77888	0.064862	0.0139834	0.179394	0.10247
chr11	62882618	62882666	4799608	0	+	0.395833	(0.378,0.408]	chr11	444823	1	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SLC3A2	ENSG00000168003.18	ENST00000680729.1:ENST00000680002.1:ENST00000681467.1:ENST00000377890.6:ENST00000538084.2:ENST00000681569.1:ENST00000680725.1:ENST00000377891.6:ENST00000377889.6:ENST00000681215.1:ENST00000535296.5:ENST00000680631.1:ENST00000544377.2:ENST00000680610.1:ENST00000680297.1:ENST00000680134.1:ENST00000681232.1:ENST00000681657.1:ENST00000541425.6:ENST00000679908.1:ENST00000681563.1:ENST00000338663.12:ENST00000680654.1:ENST00000681107.1:ENST00000541649.2:ENST00000538682.6:ENST00000536981.6:ENST00000539891.6:ENST00000679594.1:ENST00000535768.2:ENST00000537508.6:ENST00000537839.5:ENST00000546253.5:ENST00000457660.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	18	135	2	1.55287	1.672785	1.7927	0.0163057	0.00776407	0.101571	0.0787356
chr3	19960249	19960349	1376167	0	+	0.38	(0.378,0.408]	chr3	145051	70	INTRON	INTRON	RAB5A	ENSG00000144566.11	ENST00000273047.9:ENST00000412966.5:ENST00000446547.5:ENST00000422242.1:ENST00000469122.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	59	2	1.34117	1.672575	2.00398	0.0505568	0.0393906	0.17538	0.143072
chr4	79977020	79977120	2169576	0	-	0.35	(0.32,0.35]	chr4	213849	121	INTRON	INTRON	ANTXR2	ENSG00000163297.18	ENST00000403729.7:ENST00000449651.5:ENST00000679571.1:ENST00000681710.1:ENST00000680913.1:ENST00000681115.1:ENST00000404191.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	86	2	1.41804	1.672545	1.92705	0.0337299	0.0267365	0.146709	0.123349
chr21	34105666	34105765	7401416	0	+	0.262626	[0,0.28]	chr21	753974	85	UTR3	UTR3:EXON_MRNA:INTRON	MRPS6:SLC5A3	ENSG00000243927.6:ENSG00000198743.7	ENST00000488492.5:ENST00000477091.5:ENST00000399312.3:ENST00000381151.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	101	2	1.61261	1.6724350000000001	1.73226	0.0524108	0.0243731	0.160429	0.131317
chr16	58610497	58610597	6496189	0	-	0.44	(0.408,0.44]	chr16	628638	106	INTRON	INTRON	CNOT1	ENSG00000125107.19	ENST00000317147.10:ENST00000569240.5:ENST00000567188.5:ENST00000441024.6:ENST00000565605.5:ENST00000564557.1:ENST00000569916.1:ENST00000565697.1:ENST00000569020.5:ENST00000568158.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	56	2	1.64062	1.672355	1.70409	0.0557275	0.028108	0.165463	0.137011
chr2	55298835	55298933	1123134	0	-	0.459184	(0.44,0.476]	chr2	120407	18	INTRON	INTRON	CCDC88A	ENSG00000115355.18	ENST00000263630.13:ENST00000436346.7:ENST00000336838.10:ENST00000642200.1:ENST00000413716.7:ENST00000643413.1:ENST00000644512.1:ENST00000643375.1:ENST00000647401.1:ENST00000412148.6:ENST00000444458.5:ENST00000646285.1:ENST00000647396.1:ENST00000642563.1:ENST00000643265.1:ENST00000644415.1:ENST00000645311.1:ENST00000646796.1:ENST00000643873.1:ENST00000647291.1:ENST00000644456.1:ENST00000645450.1:ENST00000645860.1:ENST00000644825.1:ENST00000426576.6:ENST00000643440.1:ENST00000456975.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	21	148	2	1.00157	1.6722650000000001	2.34296	0.0670463	7.10457e-4	0.183051	0.0242715
chr6	49616370	49616470	3105252	0	-	0.3	(0.28,0.32]	chr6	290660	2	INTRON	INTRON	RHAG	ENSG00000112077.18	ENST00000371175.10:ENST00000646272.1:ENST00000646939.1:ENST00000646963.1:ENST00000642530.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	66	2	1.38068	1.6722199999999998	1.96376	0.0590236	0.0480066	0.189982	0.153019
chr12	116139907	116140007	5424168	0	-	0.39	(0.378,0.408]	chr12	518263	280	INTRON	INTRON	MED13L	ENSG00000123066.9	ENST00000281928.9:ENST00000650226.1:ENST00000548743.2:ENST00000647567.1:ENST00000551197.2	protein_coding	protein_coding	protein_coding	protein_coding	6	48	2	1.45712	1.672205	1.88729	0.0597975	0.0532327	0.189982	0.162538
chr16	29689079	29689179	6335480	0	+	0.39	(0.378,0.408]	chr16	606813	95	INTRON	INTRON	QPRT	ENSG00000103485.19	ENST00000449759.2:ENST00000219771.7:ENST00000395384.9:ENST00000562473.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	48	2	1.45712	1.672205	1.88729	0.0597975	0.0532327	0.189982	0.162538
chr4	73197806	73197906	2160216	0	-	0.29	(0.28,0.32]	chr4	212794	199	INTRON	INTRON	ANKRD17	ENSG00000132466.20	ENST00000358602.9:ENST00000558247.5:ENST00000330838.10:ENST00000509867.6:ENST00000561029.1:ENST00000559367.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	100	2	1.28228	1.672175	2.06207	0.0712835	0.00876132	0.185716	0.0846118
chr7	111315686	111315786	3621639	0	-	0.28	[0,0.28]	chr7	337093	3518	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	132	2	1.39598	1.6721300000000001	1.94828	0.0350227	0.0191378	0.149505	0.108861
chr16	211568	211668	6426009	0	-	0.32	(0.28,0.32]	chr16	617437	19	INTRON	INTRON	LUC7L	ENSG00000007392.17	ENST00000337351.8:ENST00000426094.5:ENST00000397783.5:ENST00000629543.2:ENST00000490762.5:ENST00000293872.13:ENST00000419516.5:ENST00000397780.5:ENST00000418978.5:ENST00000430864.5:ENST00000443357.5:ENST00000494366.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	111	2	1.56174	1.67212	1.7825	0.039921	0.0119176	0.143115	0.0962115
chr11	46761799	46761899	4947876	0	-	0.37	(0.35,0.378]	chr11	463678	4	SS5_PROX	SS5_PROX:INTRON	CKAP5	ENSG00000175216.15	ENST00000529230.6:ENST00000312055.9:ENST00000354558.7:ENST00000533413.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	44	2	1.58862	1.6721149999999998	1.75561	0.0739399	0.0615516	0.193423	0.190914
chr1	155683621	155683720	563273	0	-	0.323232	(0.32,0.35]	chr1	67204	28	INTRON	INTRON	YY1AP1	ENSG00000163374.20	ENST00000368339.9:ENST00000295566.8:ENST00000368330.6:ENST00000436865.5:ENST00000359205.9:ENST00000407221.5:ENST00000404643.5:ENST00000361140.8:ENST00000361831.9:ENST00000347088.9:ENST00000354691.9:ENST00000368340.9:ENST00000311573.9:ENST00000355499.9:ENST00000405763.7:ENST00000476093.5:ENST00000443231.5:ENST00000476027.5:ENST00000454523.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	67	2	1.40199	1.672005	1.94202	0.0486128	0.0432025	0.162255	0.153946
chr16	30251721	30251820	6472626	0	-	0.424242	(0.408,0.44]	chr16	625566	55	INTRON	INTRON	NPIPB13	ENSG00000198064.14	ENST00000568053.5	protein_coding	protein_coding	protein_coding	protein_coding	37	271	2	1.18878	1.672	2.15522	0.024255	3.42284e-4	0.12011	0.0164987
chr19	7962497	7962596	7130371	0	-	0.353535	(0.35,0.378]	chr19	718354	10	UTR3	UTR3:EXON_MRNA:INTRON	ELAVL1	ENSG00000066044.15	ENST00000407627.7:ENST00000596154.5	protein_coding	protein_coding	protein_coding	protein_coding	9	78	2	1.44343	1.67192	1.90041	0.0514088	0.0145936	0.158464	0.105992
chr1	51837055	51837155	454875	0	-	0.38	(0.378,0.408]	chr1	54613	2	SS5_PROX	SS5_PROX:INTRON	NRDC	ENSG00000078618.23	ENST00000354831.11:ENST00000539524.5:ENST00000352171.12:ENST00000485608.5:ENST00000475715.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	91	2	1.59634	1.67183	1.74732	0.0244222	0.0166132	0.12011	0.110511
chr14	74835870	74835967	5789531	0	+	0.360825	(0.35,0.378]	chr14	548538	2	UTR3	UTR3:EXON_MRNA:INTRON	YLPM1	ENSG00000119596.18	ENST00000325680.12:ENST00000552421.5:ENST00000549293.5:ENST00000554107.2:ENST00000549197.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	74	2	1.42644	1.6717499999999998	1.91706	0.0390715	0.026412	0.161228	0.122506
chr1	114742570	114742669	528479	0	-	0.424242	(0.408,0.44]	chr1	62335	5	INTRON	INTRON	CSDE1	ENSG00000009307.17	ENST00000339438.10:ENST00000610726.5:ENST00000692719.1:ENST00000358528.9:ENST00000688211.1:ENST00000438362.7:ENST00000689217.1:ENST00000689989.1:ENST00000686025.1:ENST00000686781.1:ENST00000686123.1:ENST00000684913.1:ENST00000686235.1:ENST00000693467.1:ENST00000689732.1:ENST00000693644.1:ENST00000687759.1:ENST00000692044.1:ENST00000689885.1:ENST00000691403.1:ENST00000692629.1:ENST00000690013.1:ENST00000690420.1:ENST00000692950.1:ENST00000686667.1:ENST00000691032.1:ENST00000685676.1:ENST00000529046.6:ENST00000692672.1:ENST00000691377.1:ENST00000688611.1:ENST00000690207.1:ENST00000693311.1:ENST00000689510.1:ENST00000686581.1:ENST00000689727.1:ENST00000690784.1:ENST00000483030.2:ENST00000687548.1:ENST00000261443.9:ENST00000530886.5:ENST00000369530.5:ENST00000534699.5:ENST00000524652.2:ENST00000525132.1:ENST00000534389.2:ENST00000525878.5:ENST00000525970.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	13	102	2	1.21368	1.6716250000000001	2.12957	0.0539423	0.00421806	0.181435	0.0572185
chr8	129571302	129571402	4061001	0	-	0.33	(0.32,0.35]	chr8	369677	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1:ENST00000676273.1:ENST00000667643.1:ENST00000668791.1:ENST00000663716.1:ENST00000663572.1:ENST00000667962.1:ENST00000674877.1:ENST00000675316.1:ENST00000674656.1:ENST00000446592.7:ENST00000667341.1:ENST00000675186.1:ENST00000652971.1:ENST00000661447.1:ENST00000674863.1:ENST00000675498.1:ENST00000675527.1:ENST00000676108.1:ENST00000657647.1:ENST00000675589.1:ENST00000675913.1:ENST00000675109.1:ENST00000671632.1:ENST00000671311.1:ENST00000676099.1:ENST00000660652.1:ENST00000675522.1:ENST00000675044.1:ENST00000675435.1:ENST00000674639.1:ENST00000676069.1:ENST00000675532.1:ENST00000674762.1:ENST00000523151.6:ENST00000675948.1:ENST00000665364.1:ENST00000657251.1:ENST00000675166.1:ENST00000674883.1:ENST00000675867.1:ENST00000674580.1:ENST00000675393.1:ENST00000520048.1:ENST00000674906.1:ENST00000676030.1:ENST00000670588.1:ENST00000675072.1:ENST00000664936.1:ENST00000652914.1:ENST00000657069.1:ENST00000674882.1	lncRNA	lncRNA	lncRNA	lncRNA	13	111	2	1.34281	1.671585	2.00036	0.0321748	0.012813	0.145026	0.0926667
chr1	19208080	19208180	386821	0	-	0.41	(0.408,0.44]	chr1	46143	59	INTRON	INTRON	UBR4	ENSG00000127481.15	ENST00000375254.8	protein_coding	protein_coding	protein_coding	protein_coding	9	72	2	1.49789	1.671525	1.84516	0.0390091	0.0193431	0.161009	0.108861
chr22	28620252	28620352	7572338	0	-	0.55	(0.515,0.57]	chr22	774287	1773	INTRON	INTRON	TTC28	ENSG00000100154.15	ENST00000397906.7	protein_coding	protein_coding	protein_coding	protein_coding	11	71	2	1.18251	1.67151	2.16051	0.0690131	0.0046825	0.184298	0.0631419
chr1	23327825	23327925	399423	0	-	0.43	(0.408,0.44]	chr1	47865	37	INTRON	INTRON	HNRNPR	ENSG00000125944.21	ENST00000478691.5:ENST00000302271.11:ENST00000374616.7:ENST00000374612.5:ENST00000675048.1:ENST00000606561.5:ENST00000427764.3:ENST00000463552.5:ENST00000470941.5:ENST00000476451.2	protein_coding	protein_coding	protein_coding	protein_coding	10	80	2	1.66945	1.671505	1.67356	0.0239999	0.0218479	0.123836	0.119664
chr20	35717205	35717305	7336294	0	-	0.47	(0.44,0.476]	chr20	747445	4	SS3_PROX	SS3_PROX:INTRON	RBM39	ENSG00000131051.24	ENST00000253363.11:ENST00000639702.1:ENST00000656873.1:ENST00000463004.5:ENST00000361162.10:ENST00000461283.5:ENST00000403542.6:ENST00000338163.10:ENST00000528062.7:ENST00000429968.5:ENST00000444878.5:ENST00000665058.1:ENST00000492779.5:ENST00000448303.5:ENST00000615771.5:ENST00000490484.7:ENST00000494274.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	15	108	2	1.54426	1.671495	1.79873	0.0223888	0.0101087	0.116918	0.0886557
chr5	145762289	145762387	2745906	0	-	0.397959	(0.378,0.408]	chr5	258682	14	INTRON	INTRON	PRELID2	ENSG00000186314.12	ENST00000510259.5:ENST00000510594.1:ENST00000683046.1:ENST00000334744.8:ENST00000394450.6:ENST00000505416.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	75	2	1.58299	1.671495	1.76	0.0329718	0.023484	0.133816	0.128531
chr5	36193472	36193570	2601253	0	-	0.27551	[0,0.28]	chr5	247232	10	UTR3	UTR3:EXON_MRNA	NADK2	ENSG00000152620.13	ENST00000381937.9:ENST00000397338.5:ENST00000404560.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	21	242	2	1.62549	1.671385	1.71728	0.0168502	0.00704595	0.103549	0.0754923
chr17	37154292	37154391	6760456	0	-	0.282828	(0.28,0.32]	chr17	664690	25	INTRON	INTRON	ACACA	ENSG00000278540.5	ENST00000616317.5:ENST00000614428.4:ENST00000612895.4:ENST00000619546.4:ENST00000617649.4:ENST00000614482.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	82	2	1.54521	1.6713	1.79739	0.0548272	0.0224995	0.165463	0.124921
chr3	6522847	6522947	1356469	0	+	0.39	(0.378,0.408]	chr3	142508	97	INTRON	INTRON	ENSG00000189229	ENSG00000189229.12	ENST00000660158.1:ENST00000433639.1:ENST00000655754.1:ENST00000653839.1:ENST00000662846.1:ENST00000659876.1:ENST00000414438.2:ENST00000658468.1:ENST00000414603.1:ENST00000669512.1:ENST00000667028.1:ENST00000655541.1:ENST00000668643.1:ENST00000671568.1:ENST00000671036.1:ENST00000669798.1:ENST00000655753.1:ENST00000655856.1:ENST00000658398.1:ENST00000661518.1:ENST00000661279.1:ENST00000655495.1:ENST00000663041.1:ENST00000659827.1:ENST00000667716.1:ENST00000662508.1:ENST00000668416.1:ENST00000658133.1:ENST00000659651.1:ENST00000342990.4:ENST00000660054.1:ENST00000671370.1	lncRNA	lncRNA	lncRNA	lncRNA	16	129	2	1.56352	1.6713	1.77908	0.0128449	0.00982126	0.0990564	0.0838128
chr4	55407525	55407624	1960706	0	+	0.343434	(0.32,0.35]	chr4	196553	38	INTRON	INTRON	TMEM165	ENSG00000134851.13	ENST00000381334.10:ENST00000506198.5:ENST00000508404.5:ENST00000511710.1:ENST00000502797.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	18	169	2	1.13993	1.6711200000000002	2.20231	0.0706588	6.72798e-4	0.184528	0.023543
chr6	24711369	24711467	3070646	0	-	0.357143	(0.35,0.378]	chr6	285352	21	INTRON	INTRON	C6orf62	ENSG00000112308.13	ENST00000378119.9:ENST00000378102.3	protein_coding	protein_coding	protein_coding	protein_coding	12	102	2	1.51573	1.671105	1.82648	0.0231884	0.0150408	0.127151	0.0994339
chr5	889766	889859	2564603	0	-	0.537634	(0.515,0.57]	chr5	245522	1	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	BRD9	ENSG00000028310.18	ENST00000467963.6:ENST00000495265.5:ENST00000490814.6:ENST00000495794.5:ENST00000489816.5:ENST00000483173.5:ENST00000466684.5:ENST00000489093.1:ENST00000487688.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	76	2	1.1792	1.6711049999999998	2.16301	0.0588485	0.00510122	0.189982	0.0626075
chr9	97515563	97515663	4171727	0	+	0.46	(0.44,0.476]	chr9	380069	134	INTRON	INTRON	TMOD1	ENSG00000136842.14	ENST00000395211.6:ENST00000259365.9	protein_coding	protein_coding	protein_coding	protein_coding	8	62	2	1.35267	1.671025	1.98938	0.060678	0.0198602	0.192323	0.109608
chr5	54054785	54054885	2618353	0	-	0.37	(0.35,0.378]	chr5	248837	66	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	14	120	2	1.38649	1.6710150000000001	1.95554	0.0412416	0.00372132	0.145459	0.0561984
chr11	85662297	85662396	5013455	0	-	0.272727	[0,0.28]	chr11	472883	47	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	CREBZF	ENSG00000137504.15	ENST00000682836.1:ENST00000527447.2:ENST00000490820.2:ENST00000528561.5:ENST00000260058.9:ENST00000531515.5:ENST00000534224.1:ENST00000525639.1:ENST00000527529.6:ENST00000528889.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	105	2	1.65319	1.67095	1.68871	0.0406982	0.0275612	0.1451	0.137011
chr1	100121463	100121549	515747	0	-	0.360465	(0.35,0.378]	chr1	60481	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SASS6	ENSG00000156876.10	ENST00000462159.1:ENST00000287482.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	112	2	1.44343	1.6709100000000001	1.89839	0.0514088	0.00370002	0.158464	0.0561162
chr2	167928817	167928917	1259091	0	-	0.34	(0.32,0.35]	chr2	133340	277	INTRON	INTRON	B3GALT1-AS1	ENSG00000235335.3	ENST00000430546.2:ENST00000657553.1:ENST00000670221.1:ENST00000436982.2	lncRNA	lncRNA	lncRNA	lncRNA	22	197	2	1.60059	1.670875	1.74116	0.00900328	0.00703204	0.0803518	0.0754576
chrX	41334493	41334590	7645645	0	+	0.701031	(0.57,1]	chrX	782481	2	SS5_PROX	SS5_PROX:INTRON	DDX3X	ENSG00000215301.11	ENST00000625837.2:ENST00000626301.2:ENST00000629785.2:ENST00000630255.2:ENST00000630370.2:ENST00000630858.2:ENST00000629496.3:ENST00000610559.5:ENST00000611546.2:ENST00000478993.5:ENST00000457138.7:ENST00000643821.1:ENST00000644876.2:ENST00000399959.7:ENST00000644074.1:ENST00000645338.1:ENST00000646196.1:ENST00000642793.1:ENST00000646940.1:ENST00000644307.1:ENST00000645561.1:ENST00000645080.1:ENST00000642597.1:ENST00000642722.1:ENST00000644109.1:ENST00000644958.1:ENST00000646122.1:ENST00000644513.1:ENST00000645589.1:ENST00000441189.4:ENST00000646822.1:ENST00000631641.2:ENST00000615742.4:ENST00000647219.1:ENST00000480592.6:ENST00000646223.1:ENST00000643963.1:ENST00000646319.1:ENST00000645783.1:ENST00000642624.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	12	46	2	1.31471	1.6707999999999998	2.02689	0.0372599	0.00839052	0.139731	0.0823837
chr1	71066496	71066589	482875	0	-	0.247312	[0,0.28]	chr1	57844	9	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	ZRANB2	ENSG00000132485.14	ENST00000370920.8:ENST00000477096.1:ENST00000254821.10:ENST00000487510.1:ENST00000479947.1:ENST00000473260.1:ENST00000611683.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	31	340	2	1.45502	1.67076	1.8865	0.0110732	0.00578638	0.0930147	0.0662959
chr14	31002559	31002659	5857635	0	-	0.45	(0.44,0.476]	chr14	556508	382	INTRON	INTRON	STRN3	ENSG00000196792.12	ENST00000355683.9:ENST00000357479.10:ENST00000555358.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	75	2	1.62573	1.670735	1.71574	0.045256	0.0146931	0.149888	0.106558
chr5	72861407	72861507	2387575	0	+	0.5	(0.476,0.515]	chr5	230379	2	SS3_PROX	SS3_PROX:INTRON	TNPO1	ENSG00000083312.19	ENST00000680533.1:ENST00000520850.5:ENST00000337273.10:ENST00000680025.1:ENST00000523768.5:ENST00000681711.1:ENST00000518279.5:ENST00000679378.1:ENST00000513944.5:ENST00000506351.6:ENST00000506528.5:ENST00000511754.5:ENST00000509030.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	40	2	1.61586	1.67072	1.72558	0.0767648	0.0567093	0.196164	0.185107
chr1	29176673	29176773	410392	0	-	0.42	(0.408,0.44]	chr1	49421	33	INTRON	INTRON	SRSF4	ENSG00000116350.18	ENST00000373795.7:ENST00000691479.1:ENST00000466448.4:ENST00000605204.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	26	201	2	1.51992	1.670645	1.82137	0.0124119	0.0017159	0.0918925	0.038208399999999997
chr11	59574892	59574991	4954185	0	-	0.424242	(0.408,0.44]	chr11	465172	6	UTR3	UTR3:EXON_MRNA	OSBP	ENSG00000110048.12	ENST00000263847.6	protein_coding	protein_coding	protein_coding	protein_coding	17	114	2	1.15856	1.670625	2.18269	0.0394615	0.0055386	0.161534	0.0648867
chrX	154740276	154740375	7915212	0	-	0.353535	(0.35,0.378]	chrX	806107	236	INTRON	INTRON	GAB3	ENSG00000160219.12	ENST00000496390.5:ENST00000424127.3:ENST00000369575.7:ENST00000369568.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	45	2	1.5118	1.6703350000000001	1.82887	0.0789277	0.0584878	0.198963	0.189395
chr3	160405283	160405382	1544654	0	+	0.333333	(0.32,0.35]	chr3	160690	2	INTRON	INTRON	SMC4	ENSG00000113810.16	ENST00000472282.5:ENST00000472991.5:ENST00000357388.8:ENST00000469762.5:ENST00000468653.5:ENST00000467468.5:ENST00000469858.5:ENST00000489573.5:ENST00000462787.5:ENST00000344722.5:ENST00000470240.5:ENST00000497984.5:ENST00000487747.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	66	2	1.45026	1.67028	1.8903	0.0622478	0.0298043	0.194723	0.129138
chr12	69272677	69272776	5163849	0	+	0.353535	(0.35,0.378]	chr12	489054	33	UTR3	UTR3:EXON_MRNA	CPSF6	ENSG00000111605.18	ENST00000435070.7:ENST00000650046.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	70	2	1.60653	1.670215	1.7339	0.0427748	0.0260366	0.148082	0.133676
chr8	23556208	23556308	3715372	0	+	0.39	(0.378,0.408]	chr8	345227	126	INTRON	INTRON	SLC25A37	ENSG00000147454.14	ENST00000519973.6:ENST00000290075.10:ENST00000417331.6:ENST00000518881.5:ENST00000520654.1:ENST00000523930.1:ENST00000523883.5:ENST00000517923.1:ENST00000520949.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	15	115	2	1.31633	1.6702	2.02407	0.0295659	0.00680892	0.142135	0.0711884
chr19	28482565	28482665	7165920	0	-	0.25	[0,0.28]	chr19	724189	143	INTRON	INTRON	ENSG00000283403:ENSG00000267243	ENSG00000283403.1:ENSG00000267243.6	ENST00000592347.5:ENST00000593065.5	lncRNA	lncRNA	lncRNA	lncRNA	15	164	2	1.33936	1.670145	2.00093	0.0334161	0.0114094	0.146709	0.0886611
chr21	37405275	37405375	7406607	0	+	0.36	(0.35,0.378]	chr21	754850	298	INTRON	INTRON	DYRK1A	ENSG00000157540.22	ENST00000646523.1:ENST00000647425.1:ENST00000647188.2:ENST00000647504.1:ENST00000644942.1:ENST00000338785.8:ENST00000643624.1:ENST00000643551.1:ENST00000426672.6:ENST00000398960.7	protein_coding	protein_coding	protein_coding	protein_coding	10	81	2	1.54566	1.66993	1.7942	0.0378648	0.0207593	0.141212	0.122348
chr21	39250295	39250395	7464891	0	-	0.29	(0.28,0.32]	chr21	760477	1	SS5_PROX	SS5_PROX:INTRON	BRWD1	ENSG00000185658.14	ENST00000333229.6:ENST00000342449.8:ENST00000446924.5:ENST00000380800.7:ENST00000430093.5:ENST00000445245.5:ENST00000445668.5:ENST00000412604.1:ENST00000455867.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	59	2	1.47299	1.669915	1.86684	0.0605813	0.0597769	0.189982	0.171122
chr13	110904442	110904542	5650541	0	-	0.23	[0,0.28]	chr13	538376	1	SS3_PROX	SS3_PROX:INTRON	ANKRD10	ENSG00000088448.14	ENST00000267339.6:ENST00000489973.6:ENST00000310847.8:ENST00000465753.1:ENST00000494859.5:ENST00000464579.1:ENST00000463156.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	16	173	2	1.49859	1.6698300000000001	1.84107	0.0192797	0.0169863	0.110899	0.108861
chrX	47636080	47636174	7814561	0	-	0.542553	(0.515,0.57]	chrX	796450	7	UTR3	UTR3:EXON_MRNA	ELK1	ENSG00000126767.18	ENST00000376983.8:ENST00000247161.7	protein_coding	protein_coding	protein_coding	protein_coding	14	87	2	1.2624	1.669805	2.07721	0.0362887	0.0067022	0.138959	0.0738715
chr12	118381326	118381426	5234447	0	+	0.42	(0.408,0.44]	chr12	496607	7	INTRON	INTRON	SUDS3	ENSG00000111707.12	ENST00000543473.2	protein_coding	protein_coding	protein_coding	protein_coding	16	125	2	1.50217	1.669775	1.83738	0.022351	0.00459091	0.116768	0.0623576
chr13	19722759	19722859	5552338	0	-	0.44	(0.408,0.44]	chr13	530696	128	INTRON	INTRON	PSPC1	ENSG00000121390.19	ENST00000471658.5:ENST00000492741.5:ENST00000635562.1:ENST00000338910.9:ENST00000619300.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	17	129	2	1.65543	1.669765	1.6841	0.0193369	0.00529077	0.108861	0.0657112
chr18	9917317	9917417	6873374	0	+	0.54	(0.515,0.57]	chr18	680866	11	INTRON	INTRON	VAPA	ENSG00000101558.14	ENST00000400000.7:ENST00000577901.5:ENST00000340541.4:ENST00000585042.5:ENST00000578314.1:ENST00000584796.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	31	193	2	1.41844	1.669625	1.92081	0.00726079	0.00168717	0.0757648	0.0370442
chr10	124767502	124767601	4712301	0	-	0.212121	[0,0.28]	chr10	434810	15	INTRON	INTRON	EEF1AKMT2	ENSG00000203791.15	ENST00000652548.1:ENST00000466270.5:ENST00000368836.7:ENST00000464099.5:ENST00000498770.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	125	2	1.45089	1.669545	1.8882	0.0349837	0.0254516	0.137515	0.133676
chr1	111172241	111172341	184052	0	+	0.35	(0.32,0.35]	chr1	20432	106	INTRON	INTRON	CEPT1	ENSG00000134255.15	ENST00000545121.5:ENST00000498239.5:ENST00000357172.9:ENST00000460443.5:ENST00000478042.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	98	2	1.44797	1.6694550000000001	1.89094	0.0304475	0.0185636	0.143385	0.108861
chr3	6540715	6540815	1356648	0	+	0.52	(0.515,0.57]	chr3	142508	276	INTRON	INTRON	ENSG00000189229	ENSG00000189229.12	ENST00000660158.1:ENST00000433639.1:ENST00000655754.1:ENST00000653839.1:ENST00000662846.1:ENST00000659876.1:ENST00000414438.2:ENST00000658468.1:ENST00000414603.1:ENST00000669512.1:ENST00000667028.1:ENST00000655541.1:ENST00000668643.1:ENST00000671568.1:ENST00000671036.1:ENST00000669798.1:ENST00000655753.1:ENST00000655856.1:ENST00000658398.1:ENST00000661518.1:ENST00000661279.1:ENST00000655495.1:ENST00000663041.1:ENST00000659827.1:ENST00000667716.1:ENST00000662508.1:ENST00000668416.1:ENST00000658133.1:ENST00000659651.1:ENST00000342990.4:ENST00000660054.1:ENST00000671370.1	lncRNA	lncRNA	lncRNA	lncRNA	11	75	2	1.59629	1.66936	1.74243	0.0274344	0.0123268	0.136554	0.0913588
chrX	18239893	18239990	7769890	0	-	0.494845	(0.476,0.515]	chrX	794120	7	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	SCML2	ENSG00000102098.19	ENST00000251900.9:ENST00000420857.6:ENST00000398048.4:ENST00000491988.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	62	2	1.36967	1.669	1.96833	0.0605132	0.0195007	0.171085	0.119967
chr1	89839459	89839558	159708	0	+	0.343434	(0.32,0.35]	chr1	17274	53	INTRON	INTRON	LRRC8D	ENSG00000171492.14	ENST00000525774.5:ENST00000337338.9:ENST00000394593.7:ENST00000532201.5	protein_coding	protein_coding	protein_coding	protein_coding	12	107	2	1.64353	1.6689699999999998	1.69441	0.0398512	0.00976809	0.143072	0.0877296
chr19	28531403	28531502	7166409	0	-	0.242424	[0,0.28]	chr19	724189	632	INTRON	INTRON	ENSG00000283403:ENSG00000267243	ENSG00000283403.1:ENSG00000267243.6	ENST00000592347.5:ENST00000593065.5	lncRNA	lncRNA	lncRNA	lncRNA	19	216	2	1.65916	1.66894	1.67872	0.0191452	0.00828389	0.108861	0.0814279
chr22	36227303	36227403	7584186	0	-	0.45	(0.44,0.476]	chr22	775960	12	UTR3	UTR3:EXON_MRNA	APOL2	ENSG00000128335.14	ENST00000358502.10:ENST00000249066.10:ENST00000451256.6	protein_coding	protein_coding	protein_coding	protein_coding	9	68	2	1.20796	1.6689399999999999	2.12992	0.0783119	0.010975	0.197588	0.092635
chr3	33388933	33389033	1651178	0	-	0.32	(0.28,0.32]	chr3	169319	7	UTR3	UTR3:EXON_MRNA	UBP1	ENSG00000153560.12	ENST00000283629.8:ENST00000492136.1:ENST00000447368.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	91	2	1.64082	1.66885	1.69688	0.0422774	0.0219684	0.148082	0.123836
chr4	39754460	39754559	1953557	0	+	0.414141	(0.408,0.44]	chr4	195642	83	INTRON	INTRON	UBE2K	ENSG00000078140.14	ENST00000510934.5:ENST00000261427.10:ENST00000438068.6:ENST00000513231.5:ENST00000503368.5:ENST00000445950.2:ENST00000510719.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	15	115	2	1.55373	1.66876	1.78379	0.0131662	0.0120158	0.0999551	0.0902542
chr11	5450004	5450104	4897721	0	-	0.3	(0.28,0.32]	chr11	459193	86	INTRON	INTRON	HBG2:ENSG00000239920:HBE1:OR51B5	ENSG00000196565.15:ENSG00000239920.2:ENSG00000213931.7:ENSG00000167355.8	ENST00000380252.6:ENST00000380259.7:ENST00000292896.3:ENST00000380237.5:ENST00000420726.6:ENST00000420465.6:ENST00000415970.6:ENST00000418729.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:nonsense_mediated_decay:processed_transcript	21	208	2	1.22022	1.6687150000000002	2.11721	0.0357276	0.00264161	0.152009	0.0459196
chr1	1317580	1317659	359490	0	-	0.481013	(0.476,0.515]	chr1	41632	1	EXON_LNCRNA	EXON_LNCRNA:INTRON	INTS11:ENSG00000240731	ENSG00000127054.22:ENSG00000240731.1	ENST00000540437.5:ENST00000545578.5:ENST00000620829.4:ENST00000435064.6:ENST00000323275.10:ENST00000411962.5:ENST00000419704.5:ENST00000458452.7:ENST00000421495.6:ENST00000532772.5:ENST00000450926.6:ENST00000527098.5:ENST00000528879.5:ENST00000531377.5:ENST00000434694.6:ENST00000488042.6:ENST00000526797.5:ENST00000526332.5:ENST00000430786.5:ENST00000527719.5:ENST00000530031.5:ENST00000526113.1:ENST00000526904.5:ENST00000525603.1:ENST00000444968.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA	9	68	2	1.59493	1.668715	1.7425	0.0417334	0.0213255	0.147007	0.123504
chr11	3728006	3728105	4894464	0	-	0.383838	(0.378,0.408]	chr11	458852	24	INTRON	INTRON	NUP98	ENSG00000110713.17	ENST00000359171.8:ENST00000324932.12:ENST00000650171.1:ENST00000355260.7:ENST00000397004.8:ENST00000397007.8:ENST00000527104.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	48	2	1.51223	1.668715	1.8252	0.0619563	0.051139	0.176696	0.174514
chr6	36599628	36599724	2854472	0	+	0.416667	(0.408,0.44]	chr6	269790	3	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	SRSF3	ENSG00000112081.17	ENST00000613941.4:ENST00000373715.11:ENST00000339436.11:ENST00000477442.6:ENST00000620941.1:ENST00000620389.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	83	2	1.60344	1.668625	1.73381	0.0387506	0.0145181	0.160156	0.0977607
chr7	158808761	158808861	3689606	0	-	0.45	(0.44,0.476]	chr7	342421	93	INTRON	INTRON	ESYT2	ENSG00000117868.18	ENST00000251527.10:ENST00000275418.13:ENST00000652148.1:ENST00000483958.5:ENST00000497111.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	14	109	2	1.59522	1.66859	1.74196	0.0189007	0.00909881	0.108861	0.0855292
chrX	123999569	123999668	7717131	0	+	0.484848	(0.476,0.515]	chrX	789462	358	INTRON	INTRON	STAG2	ENSG00000101972.20	ENST00000394477.5:ENST00000218089.13:ENST00000455404.5:ENST00000483575.5:ENST00000687810.1:ENST00000687071.1:ENST00000469481.1:ENST00000458700.5:ENST00000371160.5:ENST00000435103.5:ENST00000687852.1:ENST00000371145.8:ENST00000692982.1:ENST00000371157.7:ENST00000691035.1:ENST00000686802.1:ENST00000691383.1:ENST00000686127.1:ENST00000371144.7:ENST00000458176.5:ENST00000466748.5:ENST00000471107.1:ENST00000428941.5:ENST00000435215.5:ENST00000394478.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	64	2	1.59365	1.6684100000000002	1.74317	0.0396373	0.0306944	0.161534	0.13151
chrX	48526290	48526389	7658462	0	+	0.333333	(0.32,0.35]	chrX	783771	16	INTRON	INTRON	EBP	ENSG00000147155.11	ENST00000276096.10:ENST00000498425.1:ENST00000495186.6:ENST00000446158.5:ENST00000414061.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	61	2	1.50258	1.66837	1.83416	0.0631198	0.0399817	0.176946	0.161534
chr7	64922286	64922385	3321281	0	+	0.414141	(0.408,0.44]	chr7	308796	36	INTRON	INTRON	ZNF273	ENSG00000198039.12	ENST00000527278.5:ENST00000489672.5:ENST00000476120.2:ENST00000395375.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	64	2	1.44993	1.668215	1.8865	0.0638951	0.0148842	0.177824	0.107116
chr21	38076356	38076456	7463645	0	-	0.43	(0.408,0.44]	chr21	760281	212	INTRON	INTRON	DSCR4	ENSG00000184029.9	ENST00000398948.5:ENST00000328264.7	lncRNA	lncRNA	lncRNA	lncRNA	6	49	2	1.64062	1.66814	1.69566	0.0557275	0.0453922	0.165463	0.164236
chr4	1875233	1875333	1910608	0	+	0.41	(0.408,0.44]	chr4	191707	33	INTRON	INTRON	NSD2	ENSG00000109685.19	ENST00000508803.6:ENST00000507820.5:ENST00000508355.5:ENST00000514045.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	14	109	2	1.17305	1.66812	2.16319	0.0660199	0.00180756	0.181924	0.0393572
chr18	12966979	12967079	6876350	0	+	0.27	[0,0.28]	chr18	681295	21	INTRON	INTRON	SEH1L	ENSG00000085415.16	ENST00000262124.15:ENST00000399892.7:ENST00000585730.5:ENST00000589446.5:ENST00000587761.1:ENST00000588251.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	110	2	1.60395	1.668105	1.73226	0.0524108	0.0203292	0.160429	0.121586
chr3	33680582	33680682	1653627	0	-	0.43	(0.408,0.44]	chr3	169658	167	INTRON	INTRON	CLASP2	ENSG00000163539.18	ENST00000399362.8:ENST00000682230.1:ENST00000468888.6:ENST00000359576.9	protein_coding	protein_coding	protein_coding	protein_coding	6	48	2	1.40374	1.668085	1.93243	0.0721345	0.0441194	0.187433	0.162255
chr16	23882190	23882290	6324222	0	+	0.43	(0.408,0.44]	chr16	605697	130	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000645517.1:ENST00000498739.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	85	2	1.20916	1.66803	2.1269	0.0631681	0.00691204	0.197212	0.0718189
chr8	37879314	37879414	3935743	0	-	0.32	(0.28,0.32]	chr8	360576	13	INTRON	INTRON	RAB11FIP1	ENSG00000156675.16	ENST00000330843.9:ENST00000287263.8:ENST00000522727.5	protein_coding	protein_coding	protein_coding	protein_coding	14	140	2	1.50303	1.66803	1.83303	0.0220301	0.0129206	0.123836	0.092874
chr11	2961397	2961496	4891678	0	-	0.484848	(0.476,0.515]	chr11	458309	11	INTRON	INTRON	NAP1L4	ENSG00000205531.13	ENST00000620138.4:ENST00000380542.9:ENST00000526115.5:ENST00000492685.5:ENST00000528363.5:ENST00000532325.6:ENST00000448187.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	69	2	1.63838	1.66798	1.69758	0.0555021	0.0144542	0.165463	0.105087
chr13	19713488	19713588	5552245	0	-	0.33	(0.32,0.35]	chr13	530696	35	INTRON	INTRON	PSPC1	ENSG00000121390.19	ENST00000471658.5:ENST00000492741.5:ENST00000635562.1:ENST00000338910.9:ENST00000619300.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	13	102	2	1.14443	1.66797	2.19151	0.056351	0.0114722	0.184423	0.0888882
chr9	131136006	131136106	4215730	0	+	0.39	(0.378,0.408]	chr9	386542	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	NUP214	ENSG00000126883.19	ENST00000695497.1:ENST00000695498.1:ENST00000695496.1:ENST00000695495.1:ENST00000695494.1:ENST00000695493.1:ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000525561.2:ENST00000651022.1:ENST00000695499.1:ENST00000530843.1:ENST00000530863.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	24	187	2	1.21746	1.66797	2.11848	0.0332051	8.71513e-4	0.134128	0.0268326
chr5	157789567	157789666	2757944	0	-	0.262626	[0,0.28]	chr5	260243	1	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	CLINT1	ENSG00000113282.14	ENST00000523094.5:ENST00000411809.7:ENST00000530742.5:ENST00000524306.1:ENST00000518855.5:ENST00000523908.5:ENST00000522381.1:ENST00000521047.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	101	2	1.63696	1.667955	1.69895	0.0568939	0.0224451	0.167723	0.124921
chr9	111897613	111897713	4184459	0	+	0.45	(0.44,0.476]	chr9	381683	3	SS5_PROX	SS5_PROX:INTRON	UGCG	ENSG00000148154.10	ENST00000374279.4:ENST00000489355.1:ENST00000495085.1:ENST00000490110.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	95	2	1.50109	1.66784	1.83459	0.0198542	0.0163678	0.109608	0.109593
chr16	24741757	24741857	6329334	0	+	0.37	(0.35,0.378]	chr16	605933	111	INTRON	INTRON	TNRC6A	ENSG00000090905.19	ENST00000566108.2:ENST00000395799.8:ENST00000315183.11:ENST00000562829.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	98	2	1.20425	1.66778	2.13131	0.0567138	0.00741515	0.185112	0.0744307
chr16	31181604	31181702	6340567	0	+	0.459184	(0.44,0.476]	chr16	608317	10	INTRON	INTRON	FUS	ENSG00000089280.19	ENST00000566605.5:ENST00000254108.12:ENST00000380244.7:ENST00000487045.6:ENST00000487509.6:ENST00000568685.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	15	112	2	1.36731	1.66768	1.96805	0.0246767	0.0109533	0.12011	0.0925675
chr7	158825943	158826043	3689778	0	-	0.43	(0.408,0.44]	chr7	342421	265	INTRON	INTRON	ESYT2	ENSG00000117868.18	ENST00000251527.10:ENST00000275418.13:ENST00000652148.1:ENST00000483958.5:ENST00000497111.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	15	115	2	1.62689	1.6675200000000001	1.70815	0.0159677	0.00962857	0.101453	0.086971
chr16	10400591	10400691	6286423	0	+	0.37	(0.35,0.378]	chr16	601961	77	INTRON	INTRON	ATF7IP2	ENSG00000166669.14	ENST00000564797.5:ENST00000396559.5:ENST00000396560.6:ENST00000562527.5:ENST00000561932.5:ENST00000543967.5:ENST00000562102.6:ENST00000535850.5:ENST00000569900.5:ENST00000569939.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	68	2	1.34146	1.667485	1.99351	0.0634598	0.020841	0.19806000000000001	0.111648
chr9	129011077	129011173	4359874	0	-	0.53125	(0.515,0.57]	chr9	400811	5	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	SH3GLB2	ENSG00000148341.18	ENST00000372564.8:ENST00000479237.5:ENST00000372559.5:ENST00000372554.8:ENST00000461811.5:ENST00000416629.5:ENST00000417224.5:ENST00000455407.5:ENST00000483980.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	86	2	1.53025	1.66736	1.80447	0.0216707	0.00879341	0.11491	0.084878
chr2	197880196	197880296	969858	0	+	0.36	(0.35,0.378]	chr2	104858	695	INTRON	INTRON	PLCL1	ENSG00000115896.16	ENST00000428675.6:ENST00000435320.1:ENST00000487695.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	53	2	1.5118	1.667305	1.82281	0.0789277	0.0316938	0.198963	0.144635
chr15	74802610	74802708	6063439	0	+	0.72449	(0.57,1]	chr15	577363	2	UTR3	UTR3:EXON_MRNA	CSK	ENSG00000103653.17	ENST00000220003.14:ENST00000439220.6:ENST00000567571.5	protein_coding	protein_coding	protein_coding	protein_coding	16	66	2	1.58776	1.66716	1.74656	0.0295652	0.00295983	0.142135	0.0486606
chr11	66641289	66641387	4811056	0	+	0.469388	(0.44,0.476]	chr11	447893	2	INTRON	INTRON	RBM14-RBM4:RBM4	ENSG00000248643.5:ENSG00000173933.21	ENST00000412278.2:ENST00000421355.1:ENST00000500635.2:ENST00000396053.9:ENST00000408993.6:ENST00000578778.5:ENST00000398692.8:ENST00000310092.12:ENST00000510173.6:ENST00000528039.5:ENST00000506523.6:ENST00000530235.1:ENST00000409406.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	10	79	2	1.66633	1.66704	1.66775	0.0243614	0.0219883	0.123836	0.12011
chr6	119320582	119320682	3205524	0	-	0.42	(0.408,0.44]	chr6	298328	132	INTRON	INTRON	MAN1A1	ENSG00000111885.7	ENST00000368468.4	protein_coding	protein_coding	protein_coding	protein_coding	7	53	2	1.58622	1.666985	1.74775	0.0735403	0.0291748	0.190238	0.141552
chr2	71410964	71411063	807838	0	+	0.535354	(0.515,0.57]	chr2	90285	18	INTRON	INTRON	ZNF638	ENSG00000075292.19	ENST00000409544.5:ENST00000264447.9:ENST00000487638.5:ENST00000494241.5:ENST00000409407.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	13	87	2	1.3947	1.6669049999999999	1.93911	0.0429042	0.00339987	0.148082	0.0537228
chr6	35842234	35842334	3088015	0	-	0.35	(0.32,0.35]	chr6	288815	3	SS5_PROX	SS5_PROX:INTRON	SRPK1	ENSG00000096063.16	ENST00000373825.7:ENST00000423325.6:ENST00000346162.10:ENST00000361690.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	54	2	1.49965	1.6669049999999999	1.83416	0.0631198	0.0542985	0.182243	0.176946
chr7	121169836	121169936	3395467	0	+	0.34	(0.32,0.35]	chr7	317781	198	INTRON	INTRON	CPED1	ENSG00000106034.18	ENST00000310396.10:ENST00000450913.6:ENST00000423795.5:ENST00000466055.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	16	145	2	1.63792	1.6668850000000002	1.69585	0.0188008	0.00800998	0.108861	0.0801816
chr12	116129908	116130008	5424068	0	-	0.29	(0.28,0.32]	chr12	518263	180	INTRON	INTRON	MED13L	ENSG00000123066.9	ENST00000281928.9:ENST00000650226.1:ENST00000548743.2:ENST00000647567.1:ENST00000551197.2	protein_coding	protein_coding	protein_coding	protein_coding	6	59	2	1.51776	1.66679	1.81582	0.068122	0.0528371	0.184298	0.178899
chr4	55400747	55400846	1960637	0	+	0.272727	[0,0.28]	chr4	196546	11	INTRON	INTRON	TMEM165	ENSG00000134851.13	ENST00000381334.10:ENST00000506198.5:ENST00000508404.5:ENST00000511710.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	31	335	2	1.5603	1.6667800000000002	1.77326	0.00994124	0.00669873	0.0840603	0.0738715
chr19	43588344	43588444	7187440	0	-	0.37	(0.35,0.378]	chr19	727431	41	UTR3	UTR3:EXON_MRNA:INTRON	IRGQ	ENSG00000167378.10	ENST00000422989.6:ENST00000602269.2:ENST00000601520.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	15	121	2	1.26869	1.666595	2.0645	0.0359577	0.00612402	0.152355	0.0676501
chr2	53962856	53962956	1120497	0	-	0.54	(0.515,0.57]	chr2	120102	132	INTRON	INTRON	PSME4	ENSG00000068878.15	ENST00000404125.6:ENST00000389993.7:ENST00000481518.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	44	2	1.38719	1.666545	1.9459	0.0540435	0.0429089	0.181713	0.148082
chr3	42626101	42626200	1406233	0	+	0.323232	(0.32,0.35]	chr3	147675	42	INTRON	INTRON	NKTR	ENSG00000114857.19	ENST00000468735.6:ENST00000487466.5:ENST00000429888.5:ENST00000232978.13:ENST00000478488.1:ENST00000465584.5:ENST00000466553.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	17	142	2	1.33073	1.666325	2.00192	0.0242372	0.00848699	0.130624	0.0778788
chr2	183029593	183029693	1285945	0	-	0.45	(0.44,0.476]	chr2	135438	42	INTRON	INTRON	NCKAP1	ENSG00000061676.15	ENST00000361354.9:ENST00000360982.2	protein_coding	protein_coding	protein_coding	protein_coding	6	46	2	1.49356	1.666275	1.83899	0.0589734	0.0537505	0.180803	0.167915
chr13	110901887	110901987	5650514	0	-	0.48	(0.476,0.515]	chr13	538370	8	INTRON	INTRON	ANKRD10	ENSG00000088448.14	ENST00000267339.6:ENST00000489973.6:ENST00000310847.8:ENST00000465753.1:ENST00000494859.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	17	131	2	1.29706	1.666265	2.03547	0.0389894	0.00174696	0.143072	0.0386026
chr3	196073137	196073234	1897463	0	-	0.463918	(0.44,0.476]	chr3	189968	6	INTRON	INTRON	TFRC	ENSG00000072274.13	ENST00000420415.5:ENST00000360110.9:ENST00000392396.7:ENST00000421258.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	19	145	2	1.16863	1.6661450000000002	2.16366	0.0496077	8.73194e-4	0.156383	0.0268633
chr8	47773110	47773206	3943781	0	-	0.28125	(0.28,0.32]	chr8	361508	1	UTR3	UTR3:EXON_MRNA	PRKDC	ENSG00000253729.8	ENST00000314191.7	protein_coding	protein_coding	protein_coding	protein_coding	18	181	2	1.46234	1.66593	1.86952	0.0192738	0.00732513	0.119831	0.0736793
chr1	111757040	111757140	186122	0	+	0.46	(0.44,0.476]	chr1	20578	3	SS5_PROX	SS5_PROX:INTRON	DDX20	ENSG00000064703.13	ENST00000679724.1:ENST00000533164.6:ENST00000679774.1:ENST00000679498.1:ENST00000534200.2:ENST00000369702.5:ENST00000680627.1:ENST00000681559.1:ENST00000680415.1:ENST00000680038.1:ENST00000679381.1:ENST00000681529.1:ENST00000680383.1:ENST00000680317.1:ENST00000680936.1:ENST00000679576.1:ENST00000680518.1:ENST00000681747.1:ENST00000680983.1:ENST00000524894.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	63	2	1.45853	1.66589	1.87325	0.0470887	0.0265709	0.152251	0.134088
chr10	5688154	5688253	4384374	0	+	0.262626	[0,0.28]	chr10	404456	26	INTRON	INTRON	TASOR2	ENSG00000108021.21	ENST00000695832.1:ENST00000328090.9:ENST00000695737.1:ENST00000695833.1:ENST00000695834.1:ENST00000695835.1:ENST00000695836.1:ENST00000473789.5:ENST00000477043.5:ENST00000496681.5:ENST00000480839.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	10	111	2	1.23334	1.665875	2.09841	0.0765485	0.0151026	0.196164	0.108435
chr7	148820376	148820475	3670113	0	-	0.292929	(0.28,0.32]	chr7	340579	8	EXON_MRNA	EXON_MRNA:INTRON	EZH2	ENSG00000106462.12	ENST00000683292.1:ENST00000320356.7:ENST00000492143.5:ENST00000478654.5:ENST00000350995.6:ENST00000460911.5:ENST00000683744.1:ENST00000684510.1:ENST00000682317.1:ENST00000682263.1:ENST00000684300.1:ENST00000476773.5:ENST00000483967.5:ENST00000498186.5:ENST00000483012.1:ENST00000682401.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	25	224	2	1.31619	1.6658749999999998	2.01556	0.0183566	0.00506021	0.11606	0.0621733
chr17	81574972	81575072	6848968	0	-	0.44	(0.408,0.44]	chr17	678158	25	INTRON	INTRON	NPLOC4	ENSG00000182446.14	ENST00000331134.11:ENST00000374747.9:ENST00000574897.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	72	2	1.40374	1.66582	1.9279	0.0721345	0.00807087	0.187433	0.0806514
chr13	110894638	110894735	5650437	0	-	0.329897	(0.32,0.35]	chr13	538355	1	EXON_LNCRNA	EXON_LNCRNA:SS3_PROX:INTRON	ANKRD10:ANKRD10-IT1	ENSG00000088448.14:ENSG00000229152.2	ENST00000267339.6:ENST00000489973.6:ENST00000310847.8:ENST00000465753.1:ENST00000475809.1:ENST00000494859.5:ENST00000426991.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:nonsense_mediated_decay:lncRNA:processed_transcript	39	350	2	1.51139	1.66554	1.81969	0.0108758	0.00111386	0.0873034	0.0305965
chr3	6541514	6541613	1356656	0	+	0.535354	(0.515,0.57]	chr3	142508	284	INTRON	INTRON	ENSG00000189229	ENSG00000189229.12	ENST00000660158.1:ENST00000433639.1:ENST00000655754.1:ENST00000653839.1:ENST00000662846.1:ENST00000659876.1:ENST00000414438.2:ENST00000658468.1:ENST00000414603.1:ENST00000669512.1:ENST00000667028.1:ENST00000655541.1:ENST00000668643.1:ENST00000671568.1:ENST00000671036.1:ENST00000669798.1:ENST00000655753.1:ENST00000655856.1:ENST00000658398.1:ENST00000661518.1:ENST00000661279.1:ENST00000655495.1:ENST00000663041.1:ENST00000659827.1:ENST00000667716.1:ENST00000662508.1:ENST00000668416.1:ENST00000658133.1:ENST00000659651.1:ENST00000342990.4:ENST00000660054.1:ENST00000671370.1	lncRNA	lncRNA	lncRNA	lncRNA	9	60	2	1.64415	1.66551	1.68687	0.0300837	0.0231656	0.129186	0.127036
chr12	55781491	55781590	5332459	0	-	0.383838	(0.378,0.408]	chr12	509126	205	INTRON	INTRON	SARNP	ENSG00000205323.9	ENST00000546604.5:ENST00000552884.5:ENST00000336133.8:ENST00000552080.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	65	2	1.58349	1.665405	1.74732	0.0653091	0.0166132	0.180158	0.110511
chr7	151504651	151504750	3674773	0	-	0.373737	(0.35,0.378]	chr7	341207	61	INTRON	INTRON	RHEB	ENSG00000106615.10	ENST00000262187.10:ENST00000472642.5:ENST00000478470.5:ENST00000496004.5:ENST00000470370.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	56	2	1.34146	1.665375	1.98929	0.0634598	0.0417909	0.19806000000000001	0.147075
chr9	131141796	131141894	4215790	0	+	0.244898	[0,0.28]	chr9	386554	12	EXON_MRNA	EXON_MRNA:INTRON	NUP214	ENSG00000126883.19	ENST00000695497.1:ENST00000695498.1:ENST00000695496.1:ENST00000695495.1:ENST00000695494.1:ENST00000695493.1:ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000525561.2:ENST00000651022.1:ENST00000695499.1:ENST00000530863.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	18	205	2	1.38683	1.66534	1.94385	0.0339999	0.00550323	0.134783	0.0672816
chr7	72922525	72922624	3330225	0	+	0.444444	(0.44,0.476]	chr7	309573	24	INTRON	INTRON	POM121	ENSG00000196313.13	ENST00000627934.3:ENST00000395270.5	protein_coding	protein_coding	protein_coding	protein_coding	11	84	2	1.64563	1.665325	1.68502	0.0363922	0.0115528	0.138959	0.0962115
chr1	47265192	47265291	445605	0	-	0.333333	(0.32,0.35]	chr1	53995	17	INTRON	INTRON	STIL	ENSG00000123473.17	ENST00000360380.7:ENST00000371877.8:ENST00000337817.10:ENST00000682940.1:ENST00000683977.1:ENST00000682977.1:ENST00000396221.6:ENST00000684618.1:ENST00000447475.7:ENST00000418131.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	14	127	2	1.30525	1.66528	2.02531	0.0481342	0.00401813	0.153019	0.0578189
chr17	57995645	57995745	6799933	0	-	0.45	(0.44,0.476]	chr17	671423	9	INTRON	INTRON	ENSG00000266086	ENSG00000266086.3	ENST00000578794.2:ENST00000665125.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	22	169	2	1.51473	1.665255	1.81578	0.0124556	0.00330163	0.0921837	0.0527031
chrX	9524696	9524796	7619251	0	+	0.37	(0.35,0.378]	chrX	779944	225	INTRON	INTRON	TBL1X	ENSG00000101849.18	ENST00000407597.7:ENST00000380961.5:ENST00000424279.6:ENST00000645353.2:ENST00000422314.5	protein_coding	protein_coding	protein_coding	protein_coding	11	94	2	1.63291	1.665235	1.69756	0.0289396	0.0149371	0.1274	0.107462
chr16	47485730	47485830	6343546	0	+	0.47	(0.44,0.476]	chr16	608849	214	INTRON	INTRON	PHKB	ENSG00000102893.17	ENST00000566037.6:ENST00000566044.5:ENST00000299167.12:ENST00000696809.1:ENST00000323584.10:ENST00000565424.2:ENST00000567402.5:ENST00000563376.5:ENST00000564873.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	14	105	2	1.24673	1.6651449999999999	2.08356	0.0424533	0.00502853	0.161763	0.0619934
chr8	102405778	102405878	4012687	0	-	0.41	(0.408,0.44]	chr8	367237	438	INTRON	INTRON	UBR5	ENSG00000104517.13	ENST00000520539.6:ENST00000220959.8:ENST00000521922.5	protein_coding	protein_coding	protein_coding	protein_coding	7	56	2	1.49523	1.66512	1.83501	0.0534846	0.0323448	0.180041	0.133003
chr15	82391443	82391543	6075895	0	+	0.35	(0.32,0.35]	chr15	578727	357	INTRON	INTRON	UBE2Q2P2	ENSG00000259429.5	ENST00000618775.4	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	17	142	2	1.34966	1.665065	1.98047	0.0225226	0.00919797	0.124921	0.0815812
chr9	4800209	4800309	4094938	0	+	0.47	(0.44,0.476]	chr9	373155	66	INTRON	INTRON	RCL1	ENSG00000120158.12	ENST00000381750.9:ENST00000381732.3:ENST00000442869.5:ENST00000473230.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	61	2	1.24733	1.66505	2.08277	0.0561984	0.0309998	0.18407	0.13151
chr4	78854230	78854329	1982172	0	+	0.30303	(0.28,0.32]	chr4	198504	28	INTRON	INTRON	BMP2K	ENSG00000138756.19	ENST00000389010.7:ENST00000502613.3:ENST00000502871.5:ENST00000505725.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	14	135	2	1.33839	1.664855	1.99132	0.0342435	0.009828	0.147055	0.0838128
chr11	2990135	2990226	4891979	0	-	0.362637	(0.35,0.378]	chr11	458377	5	INTRON	INTRON	NAP1L4	ENSG00000205531.13	ENST00000620138.4:ENST00000380542.9:ENST00000526115.5:ENST00000532325.6:ENST00000448187.5:ENST00000399614.6:ENST00000430811.5:ENST00000529361.5:ENST00000528968.5:ENST00000526842.5:ENST00000531291.5:ENST00000534372.1	protein_coding	protein_coding	protein_coding	protein_coding	20	137	2	1.00449	1.664625	2.32476	0.0591172	0.00343673	0.189982	0.0517761
chr6	32163041	32163132	2844543	0	+	0.505495	(0.476,0.515]	chr6	268252	2	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	PPT2:PPT2-EGFL8	ENSG00000221988.13:ENSG00000258388.7	ENST00000361568.6:ENST00000395523.5:ENST00000428388.6:ENST00000585246.5:ENST00000375137.6:ENST00000375143.6:ENST00000324816.11:ENST00000422437.5:ENST00000453656.6:ENST00000583227.5:ENST00000479001.2:ENST00000421600.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	12	92	2	1.38303	1.6645699999999999	1.94611	0.0390231	0.0075261	0.143072	0.0773151
chr4	86964244	86964344	1994088	0	+	0.49	(0.476,0.515]	chr4	199032	153	INTRON	INTRON	AFF1	ENSG00000172493.23	ENST00000504956.5:ENST00000395146.9:ENST00000507468.5:ENST00000674009.1:ENST00000503477.5:ENST00000511996.5:ENST00000511442.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	48	2	1.52615	1.664495	1.80284	0.0739267	0.033161	0.190914	0.145899
chr18	36161899	36161998	6891767	0	+	0.353535	(0.35,0.378]	chr18	683062	5	INTRON	INTRON	ELP2	ENSG00000134759.14	ENST00000351393.10:ENST00000442325.6:ENST00000358232.11:ENST00000423854.6:ENST00000539560.5:ENST00000350494.10:ENST00000542824.5:ENST00000540799.1:ENST00000542050.5:ENST00000543861.5:ENST00000540766.5:ENST00000541294.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	67	2	1.28674	1.66449	2.04224	0.050599	0.0363073	0.17547	0.138959
chr17	58002518	58002618	6800002	0	-	0.36	(0.35,0.378]	chr17	671424	17	UTR3	UTR3:EXON_MRNA:INTRON	ENSG00000266086:SRSF1	ENSG00000266086.3:ENSG00000136450.13	ENST00000578794.2:ENST00000665125.1:ENST00000258962.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	12	103	2	1.60061	1.66437	1.72813	0.0249092	0.0132675	0.12011	0.100167
chr19	28525410	28525510	7166349	0	-	0.23	[0,0.28]	chr19	724189	572	INTRON	INTRON	ENSG00000283403:ENSG00000267243	ENSG00000283403.1:ENSG00000267243.6	ENST00000592347.5:ENST00000593065.5	lncRNA	lncRNA	lncRNA	lncRNA	16	179	2	1.18731	1.664255	2.1412	0.0660884	0.00319206	0.181924	0.0520345
chr1	171584941	171585041	254242	0	+	0.49	(0.476,0.515]	chr1	30257	4	SS5_PROX	SS5_PROX:INTRON	PRRC2C	ENSG00000117523.18	ENST00000647382.2:ENST00000367742.7:ENST00000338920.8:ENST00000426496.6:ENST00000495585.1:ENST00000644916.1	protein_coding	protein_coding	protein_coding	protein_coding	10	81	2	1.6474	1.6641599999999999	1.68092	0.0474026	0.0153343	0.169265	0.100249
chr10	73062363	73062463	4647496	0	-	0.31	(0.28,0.32]	chr10	427530	84	INTRON	INTRON	P4HA1	ENSG00000122884.13	ENST00000394890.7:ENST00000307116.6:ENST00000373008.6:ENST00000440381.5:ENST00000263556.3	protein_coding	protein_coding	protein_coding	protein_coding	21	205	2	1.58684	1.6641400000000002	1.74144	0.0207443	0.00408951	0.111219	0.0582239
chr3	177021328	177021427	1870640	0	-	0.333333	(0.32,0.35]	chr3	187269	21	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TBL1XR1	ENSG00000177565.18	ENST00000636864.1:ENST00000457928.7:ENST00000430069.5:ENST00000637659.1:ENST00000474363.1:ENST00000673974.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	36	271	2	1.04245	1.664115	2.28578	0.0369208	0.0010023	0.155465	0.0289093
chr3	6633034	6633134	1357574	0	+	0.24	[0,0.28]	chr3	142522	486	INTRON	INTRON	ENSG00000189229	ENSG00000189229.12	ENST00000433639.1:ENST00000655754.1:ENST00000658468.1:ENST00000669512.1:ENST00000667028.1:ENST00000655541.1:ENST00000668643.1:ENST00000671568.1:ENST00000671036.1:ENST00000669798.1:ENST00000655753.1:ENST00000655856.1:ENST00000658398.1:ENST00000661518.1:ENST00000661279.1:ENST00000655495.1:ENST00000663041.1:ENST00000659827.1:ENST00000667716.1:ENST00000668416.1:ENST00000658133.1:ENST00000342990.4:ENST00000660054.1:ENST00000671370.1	lncRNA	lncRNA	lncRNA	lncRNA	16	199	2	1.44663	1.664065	1.8815	0.0345947	0.00755057	0.148144	0.0749063
chr1	29181045	29181145	410436	0	-	0.53	(0.515,0.57]	chr1	49421	77	INTRON	INTRON	SRSF4	ENSG00000116350.18	ENST00000373795.7:ENST00000691479.1:ENST00000466448.4:ENST00000605204.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	32	207	2	1.53212	1.664015	1.79591	0.00605663	0.00146246	0.0676501	0.0350354
chr9	131136106	131136206	4215731	0	+	0.56	(0.515,0.57]	chr9	386543	1	SS5_PROX	SS5_PROX:INTRON	NUP214	ENSG00000126883.19	ENST00000695497.1:ENST00000695498.1:ENST00000695496.1:ENST00000695495.1:ENST00000695494.1:ENST00000695493.1:ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000525561.2:ENST00000651022.1:ENST00000695499.1:ENST00000530843.1:ENST00000530863.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	76	2	1.49552	1.6639	1.83228	0.0385038	0.00854719	0.159277	0.0780217
chr12	22662504	22662603	5095125	0	+	0.454545	(0.44,0.476]	chr12	481256	9	INTRON	INTRON	ETNK1	ENSG00000139163.16	ENST00000671733.1:ENST00000266517.9:ENST00000538218.2:ENST00000673406.1:ENST00000673188.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	12	89	2	1.52906	1.6638950000000001	1.79873	0.0223888	0.017448	0.116918	0.112716
chr6	99568527	99568626	3167361	0	-	0.636364	(0.57,1]	chr6	295555	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	CCNC	ENSG00000112237.13	ENST00000520429.6:ENST00000326298.8:ENST00000369220.8:ENST00000520371.5:ENST00000523961.5:ENST00000523799.5:ENST00000523985.5:ENST00000518714.5:ENST00000484049.6:ENST00000627680.2:ENST00000521017.5:ENST00000523639.5:ENST00000369217.8:ENST00000482541.2:ENST00000523541.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	15	58	2	1.46827	1.66374	1.85921	0.0173817	0.00662994	0.112474	0.0703181
chr1	54391173	54391273	463609	0	-	0.49	(0.476,0.515]	chr1	55784	345	INTRON	INTRON	SSBP3	ENSG00000157216.16	ENST00000610401.5:ENST00000357475.9:ENST00000371319.8:ENST00000417664.7:ENST00000533946.6:ENST00000371320.8:ENST00000525990.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	9	70	2	1.65426	1.663545	1.67283	0.0332283	0.0231344	0.134145	0.126939
chr15	90195561	90195661	6098041	0	+	0.4	(0.378,0.408]	chr15	580416	21	INTRON	INTRON	SEMA4B	ENSG00000185033.15	ENST00000559322.5:ENST00000559300.5:ENST00000561085.1:ENST00000332496.10:ENST00000558895.5:ENST00000559792.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	66	2	1.52219	1.66351	1.80483	0.0531838	0.0201276	0.162538	0.121243
chr1	1115271	1115367	358805	0	-	0.53125	(0.515,0.57]	chr1	41380	2	SS3_PROX	SS3_PROX:INTRON	C1orf159	ENSG00000131591.18	ENST00000379339.5:ENST00000379325.7:ENST00000421241.7:ENST00000467751.5:ENST00000477196.5:ENST00000434641.5:ENST00000482816.5:ENST00000462097.5:ENST00000475119.5:ENST00000472741.5:ENST00000480643.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	12	80	2	1.59076	1.663055	1.73535	0.0172265	0.0165373	0.110511	0.104099
chr1	110361502	110361601	182566	0	+	0.484848	(0.476,0.515]	chr1	20257	51	INTRON	INTRON	LAMTOR5-AS1	ENSG00000224699.10	ENST00000626572.2	lncRNA	lncRNA	lncRNA	lncRNA	9	70	2	1.61324	1.66295	1.71266	0.0293304	0.026684	0.134419	0.128055
chr4	78803677	78803777	1981658	0	+	0.28	[0,0.28]	chr4	198463	266	INTRON	INTRON	BMP2K	ENSG00000138756.19	ENST00000389010.7:ENST00000502613.3:ENST00000502871.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	13	139	2	1.27342	1.66291	2.0524	0.0460324	0.0137657	0.165381	0.0949306
chr17	30873700	30873799	6590857	0	+	0.454545	(0.44,0.476]	chr17	640994	37	INTRON	INTRON	ATAD5	ENSG00000176208.9	ENST00000321990.5:ENST00000578295.5	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay	6	48	2	1.47433	1.662895	1.85146	0.0595438	0.0545846	0.182529	0.16883600000000001
chr1	29174587	29174686	410371	0	-	0.333333	(0.32,0.35]	chr1	49421	12	INTRON	INTRON	SRSF4	ENSG00000116350.18	ENST00000373795.7:ENST00000691479.1:ENST00000466448.4:ENST00000605204.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	107	2	1.60939	1.662795	1.7162	0.0439266	0.00891437	0.14937	0.0849778
chr4	126637884	126637984	2237088	0	-	0.27	[0,0.28]	chr4	219023	1724	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	10	109	2	1.56073	1.66278	1.76483	0.0483	0.0236362	0.153327	0.129075
chr1	8569808	8569908	371298	0	-	0.46	(0.44,0.476]	chr1	43517	119	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000400907.6:ENST00000656437.1:ENST00000659924.1:ENST00000480342.5:ENST00000469251.1:ENST00000514428.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	10	78	2	1.29261	1.662735	2.03286	0.0583425	0.00977911	0.189184	0.0835427
chr12	76075238	76075338	5370131	0	-	0.4	(0.378,0.408]	chr12	512329	6	INTRON	INTRON	NAP1L1	ENSG00000187109.15	ENST00000618691.5:ENST00000393263.7:ENST00000431879.7:ENST00000547773.5:ENST00000544816.5:ENST00000542344.5:ENST00000535020.6:ENST00000549596.5:ENST00000552342.5:ENST00000548044.5:ENST00000550934.5:ENST00000551992.5:ENST00000548273.5:ENST00000551600.5:ENST00000547704.5:ENST00000549988.5:ENST00000547479.5:ENST00000549479.1:ENST00000551500.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	64	2	1.54765	1.662735	1.77782	0.0388177	0.0334147	0.146709	0.143072
chr16	66724748	66724848	6501954	0	-	0.4	(0.378,0.408]	chr16	628983	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	DYNC1LI2	ENSG00000135720.13	ENST00000258198.7:ENST00000443351.6:ENST00000563628.6:ENST00000569320.5:ENST00000567499.5:ENST00000564559.6:ENST00000568453.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	64	2	1.54765	1.662735	1.77782	0.0388177	0.0334147	0.146709	0.143072
chr21	9109495	9109595	7426434	0	-	0.46	(0.44,0.476]	chr21	757579	212	INTRON	INTRON	TEKT4P2	ENSG00000188681.12	ENST00000690061.1:ENST00000689141.1:ENST00000688310.1:ENST00000687537.1:ENST00000690096.1:ENST00000687888.1:ENST00000690389.1:ENST00000684989.1:ENST00000416067.6:ENST00000693307.1:ENST00000692383.1:ENST00000685666.1:ENST00000688451.1:ENST00000691190.1:ENST00000685532.1:ENST00000687488.1:ENST00000690713.1:ENST00000691834.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	10	78	2	1.29261	1.662735	2.03286	0.0583425	0.00977911	0.189184	0.0835427
chr10	74026244	74026343	4454783	0	+	0.393939	(0.378,0.408]	chr10	411391	90	INTRON	INTRON	VCL	ENSG00000035403.18	ENST00000623461.3:ENST00000372755.7:ENST00000624354.3:ENST00000211998.10:ENST00000478896.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	64	2	1.45934	1.66266	1.86598	0.0442931	0.0300232	0.162302	0.129138
chr1	65284992	65285091	135843	0	+	0.343434	(0.32,0.35]	chr1	15346	197	INTRON	INTRON	DNAJC6	ENSG00000116675.16	ENST00000463018.5:ENST00000494710.6:ENST00000263441.11:ENST00000395325.7:ENST00000483402.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	84	2	1.46273	1.662485	1.86224	0.0451962	0.0203914	0.163755	0.11076
chr19	8321975	8322075	7010324	0	+	0.62	(0.57,1]	chr19	696061	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	RPS28	ENSG00000233927.5	ENST00000449223.3:ENST00000602140.1:ENST00000600659.3:ENST00000417088.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	71	248	2	1.33695	1.66247	1.98799	0.0029363	1.50792e-4	0.0496505	0.0112558
chr15	67178259	67178358	6052987	0	+	0.525253	(0.515,0.57]	chr15	576318	33	INTRON	INTRON	SMAD3	ENSG00000166949.17	ENST00000327367.9:ENST00000679624.1:ENST00000540846.6:ENST00000558894.5:ENST00000439724.7:ENST00000681239.1:ENST00000537194.6:ENST00000558827.1:ENST00000558428.5:ENST00000560402.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	54	2	1.43029	1.662455	1.89462	0.0645632	0.0139002	0.179192	0.10247
chr18	21598373	21598470	6955093	0	-	0.536082	(0.515,0.57]	chr18	688038	10	INTRON	INTRON	ESCO1	ENSG00000141446.11	ENST00000269214.10:ENST00000383276.1:ENST00000580101.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	54	2	1.43029	1.662455	1.89462	0.0645632	0.0139002	0.179192	0.10247
chr3	15056613	15056711	1619955	0	-	0.510204	(0.476,0.515]	chr3	167447	28	INTRON	INTRON	MRPS25	ENSG00000131368.9	ENST00000695375.1:ENST00000695376.1:ENST00000695377.1:ENST00000695378.1:ENST00000695379.1:ENST00000695380.1:ENST00000695381.1:ENST00000695382.1:ENST00000496484.2:ENST00000695334.1:ENST00000695384.1:ENST00000695322.1:ENST00000447299.2:ENST00000695383.1:ENST00000474866.2:ENST00000695385.1:ENST00000695386.1:ENST00000420267.6:ENST00000695387.1:ENST00000695388.1:ENST00000695389.1:ENST00000695390.1:ENST00000695391.1:ENST00000695392.1:ENST00000449354.7:ENST00000695393.1:ENST00000695394.1:ENST00000253686.7:ENST00000695395.1:ENST00000695323.1:ENST00000444840.6:ENST00000695396.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	62	2	1.4095	1.662375	1.91525	0.054012	0.0232571	0.16443	0.127416
chr22	19953114	19953210	7477517	0	+	0.65625	(0.57,1]	chr22	762567	11	INTRON	INTRON	COMT	ENSG00000093010.15	ENST00000676678.1:ENST00000403184.5:ENST00000361682.11:ENST00000403710.5:ENST00000407537.5:ENST00000467943.5:ENST00000678868.1:ENST00000678769.1:ENST00000428707.2:ENST00000412786.5:ENST00000207636.9:ENST00000406520.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	32	2	1.43111	1.6623100000000002	1.89351	0.0484405	0.0255126	0.153635	0.133676
chr1	6594785	6594881	368168	0	-	0.489583	(0.476,0.515]	chr1	43248	8	UTR3	UTR3:EXON_MRNA:INTRON	KLHL21	ENSG00000162413.17	ENST00000377663.3:ENST00000377658.8:ENST00000467612.5:ENST00000496707.5:ENST00000463043.1	protein_coding	protein_coding	protein_coding	protein_coding	11	77	2	1.26748	1.66231	2.05714	0.0453667	0.0156961	0.164236	0.101453
chr7	119811965	119812065	3629460	0	-	0.33	(0.32,0.35]	chr7	337335	107	INTRON	INTRON	LINC02476	ENSG00000225546.6	ENST00000660268.1:ENST00000431071.5:ENST00000426413.2	lncRNA	lncRNA	lncRNA	lncRNA	6	54	2	1.54741	1.6622249999999998	1.77704	0.0719969	0.0473733	0.187322	0.169265
chr1	31050820	31050919	412747	0	-	0.484848	(0.476,0.515]	chr1	49733	216	INTRON	INTRON	PUM1	ENSG00000134644.16	ENST00000426105.7:ENST00000373747.7:ENST00000257075.9:ENST00000424085.6:ENST00000525843.5:ENST00000440538.6:ENST00000373741.8:ENST00000373742.6:ENST00000526215.5:ENST00000525948.5:ENST00000480602.1:ENST00000524516.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	70	2	1.36967	1.66218	1.95469	0.0605132	0.0115753	0.171085	0.0962115
chr11	63974619	63974680	4801816	0	+	0.52459	(0.515,0.57]	chr11	445181	1	UTR5	UTR5:EXON_MRNA	COX8A	ENSG00000176340.4	ENST00000314133.4	protein_coding	protein_coding	protein_coding	protein_coding	49	291	2	1.26907	1.66215	2.05523	0.00900481	4.26595e-4	0.0851009	0.0189958
chr1	224955498	224955598	322615	0	+	0.32	(0.28,0.32]	chr1	37126	4	SS5_PROX	SS5_PROX:INTRON	DNAH14	ENSG00000185842.16	ENST00000445597.6:ENST00000430092.5:ENST00000366850.7:ENST00000400952.7:ENST00000682510.1:ENST00000366849.5:ENST00000498360.5:ENST00000366848.5:ENST00000486657.1:ENST00000439375.6:ENST00000433124.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	72	2	1.31424	1.6620650000000001	2.00989	0.0580847	0.0427801	0.188651	0.148082
chr3	152317131	152317231	1535470	0	+	0.29	(0.28,0.32]	chr3	159996	148	INTRON	INTRON	MBNL1	ENSG00000152601.18	ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000495875.6:ENST00000324210.10:ENST00000493459.5:ENST00000459747.1:ENST00000460591.5:ENST00000545754.5:ENST00000357472.7:ENST00000324196.9:ENST00000498502.5:ENST00000463374.5:ENST00000485910.5:ENST00000465907.6:ENST00000492948.5:ENST00000485509.5:ENST00000464596.5	protein_coding	protein_coding	protein_coding	protein_coding	6	59	2	1.56118	1.662055	1.76293	0.0766478	0.0467152	0.196164	0.1676
chr8	17999691	17999791	3708538	0	+	0.35	(0.32,0.35]	chr8	343990	57	INTRON	INTRON	PCM1	ENSG00000078674.19	ENST00000325083.13:ENST00000519253.5:ENST00000524226.5:ENST00000522275.5	protein_coding	protein_coding	protein_coding	protein_coding	8	73	2	1.60297	1.661975	1.72098	0.0647328	0.0192903	0.179192	0.119831
chr1	6522031	6522129	367786	0	-	0.581633	(0.57,1]	chr1	43178	8	UTR3	UTR3:EXON_MRNA	NOL9	ENSG00000162408.11	ENST00000377705.6	protein_coding	protein_coding	protein_coding	protein_coding	11	45	2	1.62421	1.6616149999999998	1.69902	0.0376752	0.00985389	0.156361	0.0838128
chr17	30737385	30737485	6589860	0	+	0.49	(0.476,0.515]	chr17	640852	19	INTRON	INTRON	SUZ12P1	ENSG00000264538.7	ENST00000578070.5:ENST00000579526.5:ENST00000690405.1:ENST00000497969.6:ENST00000578195.6:ENST00000582557.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	17	125	2	1.17528	1.661565	2.14785	0.0480468	0.00197135	0.153019	0.0411469
chr8	129548960	129549052	4060773	0	-	0.380435	(0.378,0.408]	chr8	369652	4	INTRON	INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1:ENST00000676273.1:ENST00000667643.1:ENST00000668791.1:ENST00000663716.1:ENST00000663572.1:ENST00000676148.1:ENST00000667962.1:ENST00000674877.1:ENST00000675316.1:ENST00000674656.1:ENST00000446592.7:ENST00000667341.1:ENST00000675186.1:ENST00000652971.1:ENST00000661447.1:ENST00000674863.1:ENST00000675498.1:ENST00000675527.1:ENST00000676108.1:ENST00000657647.1:ENST00000675589.1:ENST00000675913.1:ENST00000675109.1:ENST00000671632.1:ENST00000671311.1:ENST00000676099.1:ENST00000660652.1:ENST00000675522.1:ENST00000675183.1:ENST00000675044.1:ENST00000675435.1:ENST00000674639.1:ENST00000676069.1:ENST00000675532.1:ENST00000674762.1:ENST00000523151.6:ENST00000675948.1:ENST00000665364.1:ENST00000657251.1:ENST00000675166.1:ENST00000674883.1:ENST00000675867.1:ENST00000674580.1:ENST00000675393.1:ENST00000520048.1:ENST00000674906.1:ENST00000676030.1:ENST00000670588.1:ENST00000675072.1:ENST00000664936.1:ENST00000652914.1:ENST00000657069.1	lncRNA	lncRNA	lncRNA	lncRNA	8	66	2	1.56313	1.661565	1.76	0.0474151	0.023484	0.153019	0.128531
chr7	158639695	158639795	3688107	0	-	0.38	(0.378,0.408]	chr7	342108	76	INTRON	INTRON	NCAPG2	ENSG00000146918.20	ENST00000356309.8:ENST00000432615.5:ENST00000409423.5:ENST00000441982.5:ENST00000467785.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	14	113	2	1.43527	1.66154	1.88781	0.0342334	0.00486383	0.135511	0.0640618
chr16	24543377	24543477	6327693	0	+	0.45	(0.44,0.476]	chr16	605824	22	INTRON	INTRON	RBBP6	ENSG00000122257.20	ENST00000564314.5:ENST00000567686.5:ENST00000568015.5:ENST00000319715.10:ENST00000452655.6:ENST00000381039.7:ENST00000646282.1:ENST00000348022.6	protein_coding	protein_coding	protein_coding	protein_coding	9	67	2	1.29261	1.6614749999999998	2.03034	0.0583425	0.0173569	0.189184	0.104189
chr22	20095095	20095195	7478387	0	+	0.41	(0.408,0.44]	chr22	762740	3	SS5_PROX	SS5_PROX:INTRON	DGCR8	ENSG00000128191.16	ENST00000383024.6:ENST00000351989.8:ENST00000495826.5:ENST00000407755.1:ENST00000498171.5:ENST00000491892.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	16	125	2	1.50014	1.661445	1.82275	0.0149825	0.0123226	0.0994339	0.097243
chr16	70559772	70559870	6385520	0	+	0.479592	(0.476,0.515]	chr16	613957	24	INTRON	INTRON	SF3B3	ENSG00000189091.13	ENST00000302516.10	protein_coding	protein_coding	protein_coding	protein_coding	7	55	2	1.40757	1.66141	1.91525	0.0707852	0.0232571	0.184528	0.127416
chr1	31281890	31281989	413141	0	-	0.363636	(0.35,0.378]	chr1	49796	5	EXON_LNCRNA	EXON_LNCRNA:SS3_PROX:INTRON	SNRNP40	ENSG00000060688.13	ENST00000263694.9:ENST00000489853.1:ENST00000474025.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	53	2	1.6122	1.66133	1.71046	0.0616849	0.0441269	0.174021	0.162255
chr19	19415117	19415217	7035440	0	+	0.37	(0.35,0.378]	chr19	701433	87	INTRON	INTRON	GATAD2A	ENSG00000167491.18	ENST00000494516.6:ENST00000360315.7:ENST00000609040.5:ENST00000417582.6:ENST00000683918.1:ENST00000448576.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	53	2	1.6122	1.66133	1.71046	0.0616849	0.0441269	0.174021	0.162255
chr2	20306177	20306277	1076328	0	-	0.35	(0.32,0.35]	chr2	114994	81	INTRON	INTRON	PUM2	ENSG00000055917.16	ENST00000338086.9:ENST00000361078.7:ENST00000440577.5	protein_coding	protein_coding	protein_coding	protein_coding	10	90	2	1.55682	1.66125	1.76568	0.0724487	0.00911113	0.188101	0.0855292
chr3	196062081	196062158	1897337	0	-	0.519481	(0.515,0.57]	chr3	189920	1	SS5_PROX	SS5_PROX:INTRON	TFRC	ENSG00000072274.13	ENST00000420415.5:ENST00000360110.9:ENST00000392396.7:ENST00000475593.5:ENST00000465288.5:ENST00000477148.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	22	142	2	1.58333	1.66121	1.73909	0.0119667	0.00262235	0.0899583	0.0470772
chr12	122217421	122217513	5439625	0	-	0.543478	(0.515,0.57]	chr12	520173	7	EXON_MRNA	EXON_MRNA:INTRON	DIABLO	ENSG00000184047.20	ENST00000443649.9:ENST00000650715.1:ENST00000464942.7:ENST00000353548.11:ENST00000644227.1:ENST00000644509.1:ENST00000342392.3:ENST00000645569.1:ENST00000267169.11:ENST00000489781.3:ENST00000540535.6:ENST00000642640.1:ENST00000439489.6:ENST00000541273.6:ENST00000474004.6:ENST00000541656.6:ENST00000446652.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	47	2	1.62814	1.661105	1.69407	0.0459452	0.035203	0.150193	0.149888
chr6	42882035	42882132	2867677	0	+	0.515464	(0.515,0.57]	chr6	271376	12	EXON_MRNA	EXON_MRNA:INTRON	RPL7L1	ENSG00000146223.16	ENST00000493763.7:ENST00000483998.6:ENST00000397415.7:ENST00000304734.9:ENST00000487619.1:ENST00000497417.1:ENST00000602561.1:ENST00000462348.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	47	2	1.62814	1.661105	1.69407	0.0459452	0.035203	0.150193	0.149888
chr17	42271578	42271675	6772177	0	-	0.360825	(0.35,0.378]	chr17	666965	12	EXON_LNCRNA	EXON_LNCRNA:INTRON	STAT5B:ENSG00000236194	ENSG00000173757.10:ENSG00000236194.3	ENST00000293328.8:ENST00000468312.1:ENST00000415845.1:ENST00000597755.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	9	79	2	1.63291	1.660995	1.68908	0.0301354	0.0289396	0.142482	0.1274
chr8	129487524	129487623	4060151	0	-	0.393939	(0.378,0.408]	chr8	369612	30	INTRON	INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1:ENST00000676273.1:ENST00000667643.1:ENST00000668791.1:ENST00000663716.1:ENST00000663572.1:ENST00000676148.1:ENST00000667962.1:ENST00000674877.1:ENST00000675316.1:ENST00000674656.1:ENST00000446592.7:ENST00000667341.1:ENST00000675186.1:ENST00000652971.1:ENST00000661447.1:ENST00000674863.1:ENST00000675498.1:ENST00000675527.1:ENST00000676108.1:ENST00000657647.1:ENST00000675589.1:ENST00000675913.1:ENST00000675109.1:ENST00000671632.1:ENST00000671311.1:ENST00000676099.1:ENST00000660652.1:ENST00000675522.1:ENST00000675183.1:ENST00000658861.1:ENST00000663991.1:ENST00000675044.1:ENST00000675435.1:ENST00000674639.1:ENST00000676069.1:ENST00000675532.1:ENST00000674762.1:ENST00000523151.6:ENST00000675948.1:ENST00000665364.1:ENST00000657251.1:ENST00000675166.1:ENST00000674883.1:ENST00000675867.1:ENST00000674580.1:ENST00000675393.1:ENST00000520048.1:ENST00000674906.1:ENST00000676030.1:ENST00000670588.1:ENST00000675072.1:ENST00000664936.1:ENST00000652914.1:ENST00000657069.1	lncRNA	lncRNA	lncRNA	lncRNA	25	207	2	1.58693	1.66086	1.73479	0.00851625	0.00416606	0.0833998	0.0570426
chr8	129928310	129928410	4063047	0	-	0.32	(0.28,0.32]	chr8	369828	154	INTRON	INTRON	CYRIB	ENSG00000153310.21	ENST00000694912.1:ENST00000519824.6:ENST00000523288.5:ENST00000519110.5:ENST00000401979.6:ENST00000523509.5:ENST00000522746.5:ENST00000517654.5:ENST00000522250.5:ENST00000519540.5:ENST00000522941.5:ENST00000519142.5:ENST00000518879.5:ENST00000522702.5:ENST00000521223.5:ENST00000520204.5:ENST00000518283.5:ENST00000523993.5:ENST00000520254.5:ENST00000519020.5:ENST00000518167.5:ENST00000517672.5:ENST00000519070.5:ENST00000522361.1:ENST00000518344.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	79	2	1.41943	1.660765	1.9021	0.0528302	0.0304779	0.178899	0.130699
chr8	129564129	129564229	4060928	0	-	0.36	(0.35,0.378]	chr8	369672	70	INTRON	INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1:ENST00000676273.1:ENST00000667643.1:ENST00000668791.1:ENST00000663716.1:ENST00000663572.1:ENST00000676148.1:ENST00000667962.1:ENST00000674877.1:ENST00000675316.1:ENST00000674656.1:ENST00000446592.7:ENST00000667341.1:ENST00000675186.1:ENST00000652971.1:ENST00000661447.1:ENST00000674863.1:ENST00000675498.1:ENST00000675527.1:ENST00000676108.1:ENST00000657647.1:ENST00000675589.1:ENST00000675913.1:ENST00000675109.1:ENST00000671632.1:ENST00000671311.1:ENST00000676099.1:ENST00000660652.1:ENST00000675522.1:ENST00000675044.1:ENST00000675435.1:ENST00000674639.1:ENST00000676069.1:ENST00000675532.1:ENST00000674762.1:ENST00000523151.6:ENST00000675948.1:ENST00000665364.1:ENST00000657251.1:ENST00000675166.1:ENST00000674883.1:ENST00000675867.1:ENST00000674580.1:ENST00000675393.1:ENST00000520048.1:ENST00000674906.1:ENST00000676030.1:ENST00000670588.1:ENST00000675072.1:ENST00000664936.1:ENST00000652914.1:ENST00000657069.1:ENST00000674882.1	lncRNA	lncRNA	lncRNA	lncRNA	13	108	2	1.41862	1.6603599999999998	1.9021	0.0274674	0.011433	0.136715	0.0886847
chr22	21792969	21793068	7560636	0	-	0.353535	(0.35,0.378]	chr22	773370	38	INTRON	INTRON	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	13	105	2	1.6064	1.660255	1.71411	0.0310697	0.011099	0.13151	0.0932244
chr14	101763765	101763864	5818514	0	+	0.474747	(0.44,0.476]	chr14	551813	4	INTRON	INTRON	PPP2R5C	ENSG00000078304.20	ENST00000694906.1:ENST00000422945.6:ENST00000554442.5:ENST00000556068.5:ENST00000556260.6:ENST00000328724.9:ENST00000554504.1:ENST00000553890.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	22	166	2	1.13167	1.6602000000000001	2.18873	0.048594	5.64641e-4	0.153946	0.021704
chr22	20921930	20922029	7480562	0	+	0.464646	(0.44,0.476]	chr22	763090	33	INTRON	INTRON	CRKL	ENSG00000099942.13	ENST00000354336.8:ENST00000411769.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	92	2	1.29601	1.66011	2.02421	0.0518099	0.00536295	0.159306	0.0663076
chr1	241638106	241638202	666513	0	-	0.4375	(0.408,0.44]	chr1	79093	17	INTRON	INTRON	OPN3:CHML	ENSG00000054277.14:ENSG00000203668.3	ENST00000366554.3:ENST00000490673.5:ENST00000469376.5:ENST00000463155.5:ENST00000478849.1:ENST00000366553.3:ENST00000638018.1:ENST00000638160.1:ENST00000638121.1:ENST00000636025.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	13	99	2	1.17305	1.660035	2.14702	0.0660199	0.0030836	0.181924	0.0510391
chr11	63714054	63714139	4800240	0	+	0.305882	(0.28,0.32]	chr11	444945	2	EXON_LNCRNA	EXON_LNCRNA:INTRON	RTN3	ENSG00000133318.14	ENST00000341307.6:ENST00000356000.7:ENST00000542238.5:ENST00000538995.1:ENST00000339997.8:ENST00000540798.5:ENST00000537981.5:ENST00000377819.10:ENST00000536011.5:ENST00000543123.1:ENST00000543552.5:ENST00000545432.5:ENST00000338850.5:ENST00000354497.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	80	2	1.56134	1.6599849999999998	1.75863	0.0740624	0.0177071	0.191153	0.11319
chr22	20539007	20539106	7479667	0	+	0.30303	(0.28,0.32]	chr22	762972	14	INTRON	INTRON	MED15	ENSG00000099917.17	ENST00000445987.5:ENST00000444094.5:ENST00000414658.5:ENST00000486656.5:ENST00000433831.5:ENST00000432052.5:ENST00000292733.11:ENST00000263205.11:ENST00000477824.5:ENST00000406969.5:ENST00000382974.6:ENST00000441501.5:ENST00000445189.5:ENST00000451058.5:ENST00000473028.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	80	2	1.56134	1.6599849999999998	1.75863	0.0740624	0.0177071	0.191153	0.11319
chr4	126565708	126565808	2236366	0	-	0.36	(0.35,0.378]	chr4	219023	1002	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	11	92	2	1.60653	1.659915	1.7133	0.0427748	0.0107613	0.148082	0.0920575
chr2	227524838	227524915	1026191	0	+	0.454545	(0.44,0.476]	chr2	109586	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	AGFG1	ENSG00000173744.18	ENST00000409979.6:ENST00000310078.13:ENST00000409315.5:ENST00000373671.7:ENST00000409171.5:ENST00000456594.1:ENST00000486932.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	46	2	1.54868	1.659845	1.77101	0.0693975	0.0457575	0.184298	0.164677
chr20	47337657	47337757	7349321	0	-	0.45	(0.44,0.476]	chr20	749346	187	INTRON	INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000435836.5:ENST00000446894.5:ENST00000441977.1	protein_coding	protein_coding	protein_coding	protein_coding	6	46	2	1.54868	1.659845	1.77101	0.0693975	0.0457575	0.184298	0.164677
chr9	111391555	111391655	4314332	0	-	0.32	(0.28,0.32]	chr9	396687	4	SS5_PROX	SS5_PROX:INTRON	ECPAS	ENSG00000136813.15	ENST00000684092.1:ENST00000338205.9:ENST00000259335.8	protein_coding	protein_coding	protein_coding	protein_coding	14	139	2	1.48049	1.65958	1.83867	0.0503127	0.00468412	0.156383	0.0631419
chr8	37867455	37867554	3935618	0	-	0.50505	(0.476,0.515]	chr8	360553	40	INTRON	INTRON	RAB11FIP1	ENSG00000156675.16	ENST00000330843.9:ENST00000287263.8:ENST00000522727.5:ENST00000523182.5:ENST00000522774.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	11	85	2	1.30826	1.6594799999999998	2.0107	0.0587053	0.00572098	0.167915	0.0681402
chrX	111691069	111691169	7702117	0	+	0.37	(0.35,0.378]	chrX	788221	10	INTRON	INTRON	ALG13	ENSG00000101901.12	ENST00000487141.5:ENST00000394780.8:ENST00000251943.8:ENST00000610588.4:ENST00000621367.4:ENST00000622997.3:ENST00000624161.3:ENST00000636363.1:ENST00000624881.3:ENST00000495283.5:ENST00000486353.5:ENST00000623144.3:ENST00000470971.5:ENST00000623148.3:ENST00000471924.5:ENST00000436609.5:ENST00000470704.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	77	2	1.60653	1.65947	1.71241	0.0427748	0.019274	0.148082	0.119831
chr6	26126538	26126638	2837017	0	+	0.46	(0.44,0.476]	chr6	266010	14	INTRON	INTRON	H2AC6	ENSG00000180573.10	ENST00000314088.6:ENST00000602637.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	18	132	2	1.56025	1.65945	1.75865	0.0130473	0.00825324	0.093385	0.0813266
chr16	23882889	23882988	6324229	0	+	0.414141	(0.408,0.44]	chr16	605697	137	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000645517.1:ENST00000498739.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	86	2	1.39095	1.659425	1.9279	0.046481	0.00807087	0.151299	0.0806514
chr7	157208235	157208335	3454648	0	+	0.46	(0.44,0.476]	chr7	322974	3	SS5_PROX	SS5_PROX:INTRON	UBE3C	ENSG00000009335.18	ENST00000348165.10:ENST00000469336.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	51	2	1.35267	1.659345	1.96602	0.060678	0.0426807	0.192323	0.148082
chr7	111240503	111240603	3620887	0	-	0.37	(0.35,0.378]	chr7	337093	2766	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	78	2	1.54128	1.6593200000000001	1.77736	0.0385205	0.0225073	0.1426	0.124921
chr4	82836457	82836557	2179524	0	-	0.31	(0.28,0.32]	chr4	214267	51	INTRON	INTRON	SEC31A	ENSG00000138674.17	ENST00000395310.7:ENST00000513858.5:ENST00000348405.8:ENST00000503937.5:ENST00000448323.5:ENST00000311785.11:ENST00000509142.5:ENST00000443462.6:ENST00000500777.6:ENST00000505472.5:ENST00000355196.6:ENST00000508502.5:ENST00000264405.9:ENST00000505984.5:ENST00000511338.1:ENST00000515749.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	89	2	1.56134	1.6593149999999999	1.75729	0.0740624	0.0131247	0.191153	0.0999321
chr19	11091319	11091419	7016831	0	+	0.34	(0.32,0.35]	chr19	697421	4	SS5_PROX	SS5_PROX:INTRON	LDLR	ENSG00000130164.14	ENST00000557933.5:ENST00000558518.6:ENST00000545707.5:ENST00000535915.5:ENST00000455727.6:ENST00000557958.1:ENST00000560502.5:ENST00000558013.5:ENST00000252444.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	51	459	2	1.5139	1.65927	1.80464	0.00693167	0.00121166	0.0718189	0.0321987
chr2	127759834	127759934	1225361	0	-	0.34	(0.32,0.35]	chr2	130486	214	INTRON	INTRON	WDR33	ENSG00000136709.12	ENST00000322313.9:ENST00000436787.5:ENST00000393006.5	protein_coding	protein_coding	protein_coding	protein_coding	9	79	2	1.50457	1.659225	1.81388	0.0371014	0.0309203	0.143443	0.139201
chr16	70250591	70250689	6510070	0	-	0.438776	(0.408,0.44]	chr16	630495	40	UTR3	UTR3:EXON_MRNA	EXOSC6	ENSG00000223496.3	ENST00000435634.3	protein_coding	protein_coding	protein_coding	protein_coding	19	149	2	1.50345	1.65918	1.81491	0.0138792	0.00531814	0.10247	0.0639256
chr1	193047845	193047945	612753	0	-	0.26	[0,0.28]	chr1	72474	178	INTRON	INTRON	UCHL5	ENSG00000116750.14	ENST00000367455.8:ENST00000367454.6:ENST00000367450.7:ENST00000367451.8:ENST00000367449.5:ENST00000367448.5:ENST00000421683.1	protein_coding	protein_coding	protein_coding	protein_coding	8	91	2	1.37159	1.658865	1.94614	0.0634918	0.0298508	0.198135	0.129138
chr6	35351645	35351745	2852069	0	+	0.45	(0.44,0.476]	chr6	269491	41	INTRON	INTRON	PPARD	ENSG00000112033.14	ENST00000418635.6:ENST00000448077.6:ENST00000360694.8:ENST00000311565.4:ENST00000337400.6	protein_coding	protein_coding	protein_coding	protein_coding	7	55	2	1.65297	1.658795	1.66462	0.0520247	0.0331814	0.159508	0.145918
chr1	205717088	205717187	623550	0	-	0.40404	(0.378,0.408]	chr1	74160	44	UTR3	UTR3:EXON_MRNA	NUCKS1	ENSG00000069275.13	ENST00000367142.5	protein_coding	protein_coding	protein_coding	protein_coding	27	216	2	1.53727	1.6586750000000001	1.78008	0.00929615	0.00290953	0.0817766	0.0494641
chr3	47139650	47139750	1681361	0	-	0.31	(0.28,0.32]	chr3	171624	126	INTRON	INTRON	SETD2	ENSG00000181555.22	ENST00000691544.1:ENST00000638947.2:ENST00000409792.4:ENST00000412450.1	protein_coding	protein_coding	protein_coding	protein_coding	9	91	2	1.52982	1.658575	1.78733	0.0379288	0.0276087	0.157212	0.123904
chr7	99379753	99379853	3361553	0	+	0.52	(0.515,0.57]	chr7	313864	19	INTRON	INTRON	ARPC1B	ENSG00000130429.16	ENST00000443222.6:ENST00000414376.6:ENST00000645391.1:ENST00000695607.1:ENST00000455009.6:ENST00000484375.5:ENST00000695608.1:ENST00000418347.6:ENST00000646101.2:ENST00000427217.6:ENST00000451682.5:ENST00000431816.6:ENST00000458033.6:ENST00000417330.6:ENST00000695609.1:ENST00000484600.6:ENST00000429246.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	47	2	1.5060500000000001	1.658525	1.811	0.0511812	0.0325989	0.176696	0.133687
chr7	111209310	111209410	3620575	0	-	0.52	(0.515,0.57]	chr7	337093	2454	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	47	2	1.5060500000000001	1.658525	1.811	0.0511812	0.0325989	0.176696	0.133687
chr2	144462337	144462433	1241223	0	-	0.375	(0.35,0.378]	chr2	131710	1	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	ZEB2	ENSG00000169554.23	ENST00000636471.1:ENST00000627532.3:ENST00000638128.1:ENST00000637304.1:ENST00000636179.1:ENST00000636820.1:ENST00000419938.5:ENST00000409487.7:ENST00000636732.2:ENST00000636026.2:ENST00000675069.1:ENST00000689298.1:ENST00000539609.7:ENST00000558170.6:ENST00000303660.8:ENST00000427902.5:ENST00000637267.2:ENST00000392861.6:ENST00000431672.4:ENST00000409211.5:ENST00000465308.5:ENST00000434448.5:ENST00000472146.5:ENST00000461784.3:ENST00000476394.5:ENST00000637591.2:ENST00000479735.1:ENST00000453352.5:ENST00000435831.5:ENST00000444559.5:ENST00000630572.2:ENST00000628473.1:ENST00000484313.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	77	2	1.63783	1.65848	1.67913	0.0345494	0.0250627	0.13657	0.133086
chr7	148825554	148825653	3670165	0	-	0.414141	(0.408,0.44]	chr7	340580	48	INTRON	INTRON	EZH2	ENSG00000106462.12	ENST00000683292.1:ENST00000320356.7:ENST00000492143.5:ENST00000478654.5:ENST00000350995.6:ENST00000460911.5:ENST00000683744.1:ENST00000682317.1:ENST00000682263.1:ENST00000684300.1:ENST00000476773.5:ENST00000483967.5:ENST00000498186.5:ENST00000483012.1:ENST00000682401.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	15	104	2	1.24808	1.65848	2.06888	0.0337486	0.00864911	0.146709	0.0787025
chr5	179717683	179717782	2560891	0	+	0.40404	(0.378,0.408]	chr5	244930	10	INTRON	INTRON	CANX	ENSG00000127022.16	ENST00000681674.1:ENST00000681712.1:ENST00000681903.1:ENST00000680406.1:ENST00000502296.6:ENST00000504734.5:ENST00000452673.6:ENST00000679719.1:ENST00000679523.1:ENST00000679395.1:ENST00000681504.1:ENST00000679642.1:ENST00000681894.1:ENST00000680504.1:ENST00000681265.1:ENST00000680894.1:ENST00000680812.1:ENST00000680614.1:ENST00000680985.1:ENST00000680837.1:ENST00000680827.1:ENST00000681576.1:ENST00000680984.1:ENST00000680042.1:ENST00000681762.1:ENST00000681476.1:ENST00000681072.1:ENST00000247461.9:ENST00000513246.6:ENST00000680618.1:ENST00000502673.6:ENST00000680092.1:ENST00000506654.6:ENST00000514032.5:ENST00000681733.1:ENST00000679471.1:ENST00000679527.1:ENST00000680006.1:ENST00000681398.1:ENST00000681431.1:ENST00000680013.1:ENST00000681076.1:ENST00000681168.1:ENST00000509563.2:ENST00000681342.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	66	2	1.60295	1.6583450000000002	1.71374	0.0422859	0.0274158	0.148082	0.136498
chr2	74154103	74154202	1156878	0	-	0.515152	(0.476,0.515]	chr2	123692	17	UTR3	UTR3:EXON_MRNA	MOB1A	ENSG00000114978.18	ENST00000396049.5	protein_coding	protein_coding	protein_coding	protein_coding	33	254	2	1.47615	1.6583	1.84045	0.00764861	0.00178204	0.077869	0.0379201
chr19	5968006	5968105	7125508	0	-	0.40404	(0.378,0.408]	chr19	717384	17	INTRON	INTRON	RANBP3	ENSG00000031823.14	ENST00000340578.10:ENST00000439268.6:ENST00000592771.5:ENST00000591092.5:ENST00000034275.12:ENST00000587479.2:ENST00000592621.5:ENST00000590623.5:ENST00000591736.5:ENST00000590953.5:ENST00000588879.5:ENST00000587159.5:ENST00000586117.5:ENST00000589353.5:ENST00000587463.5:ENST00000588010.5:ENST00000591124.5:ENST00000585339.5:ENST00000592133.5:ENST00000591881.5:ENST00000589886.5:ENST00000587263.5:ENST00000587956.5:ENST00000591333.5:ENST00000592266.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	13	107	2	1.26593	1.658155	2.05038	0.0680071	0.0022425	0.184298	0.0435144
chrX	73848327	73848427	7838007	0	-	0.39	(0.378,0.408]	chrX	799611	110	EXON_LNCRNA	EXON_LNCRNA:INTRON	XIST	ENSG00000229807.13	ENST00000650627.1:ENST00000434839.3:ENST00000429829.6:ENST00000635841.2:ENST00000650637.1:ENST00000648970.1	lncRNA	lncRNA	lncRNA	lncRNA	23	183	2	1.41388	1.6580650000000001	1.90225	0.0197344	0.00181345	0.109608	0.0394469
chr2	15515348	15515448	1072702	0	-	0.48	(0.476,0.515]	chr2	114441	36	INTRON	INTRON	NBAS	ENSG00000151779.13	ENST00000281513.10	protein_coding	protein_coding	protein_coding	protein_coding	16	122	2	1.48731	1.658035	1.82876	0.0173894	0.00742693	0.112515	0.0745425
chr4	152496508	152496608	2274694	0	-	0.52	(0.515,0.57]	chr4	221124	67	INTRON	INTRON	FBXW7	ENSG00000109670.16	ENST00000281708.10:ENST00000603548.6:ENST00000604872.6:ENST00000647166.1:ENST00000643834.1:ENST00000642901.1	protein_coding	protein_coding	protein_coding	protein_coding	6	41	2	1.56681	1.6580050000000002	1.7492	0.064862	0.0382504	0.179394	0.15832
chr4	78866220	78866319	1982300	0	+	0.343434	(0.32,0.35]	chr4	198529	1	INTRON	INTRON	BMP2K	ENSG00000138756.19	ENST00000389010.7:ENST00000502613.3:ENST00000502871.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	65	2	1.38564	1.657975	1.93031	0.0793006	0.0231421	0.199711	0.126939
chr10	133404068	133404167	4540319	0	+	0.252525	[0,0.28]	chr10	419095	9	INTRON	INTRON	MTG1	ENSG00000148824.19	ENST00000477902.6:ENST00000317502.11:ENST00000432508.3:ENST00000460848.5:ENST00000473735.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	104	2	1.55329	1.65796	1.76263	0.058079	0.0191804	0.167723	0.119774
chr6	4061906	4062005	2790121	0	+	0.292929	(0.28,0.32]	chr6	263563	14	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PRPF4B	ENSG00000112739.17	ENST00000480058.5:ENST00000337659.11:ENST00000481109.5:ENST00000463634.6:ENST00000494674.1:ENST00000490653.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	24	236	2	1.41369	1.65782	1.90195	0.0158002	0.00465058	0.109464	0.0600108
chr16	47488024	47488123	6343569	0	+	0.333333	(0.32,0.35]	chr16	608849	237	INTRON	INTRON	PHKB	ENSG00000102893.17	ENST00000566037.6:ENST00000566044.5:ENST00000299167.12:ENST00000696809.1:ENST00000323584.10:ENST00000565424.2:ENST00000567402.5:ENST00000563376.5:ENST00000564873.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	13	117	2	1.5565	1.657655	1.75881	0.0383034	0.00743179	0.141858	0.0772645
chr22	19109151	19109251	7551882	0	-	0.35	(0.32,0.35]	chr22	771903	193	INTRON	INTRON	DGCR2	ENSG00000070413.20	ENST00000537045.5:ENST00000545799.5:ENST00000263196.12:ENST00000389262.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	14	128	2	1.59771	1.65753	1.71735	0.0216336	0.0111024	0.11491	0.0932464
chr1	92833119	92833208	162430	0	+	0.292135	(0.28,0.32]	chr1	17515	5	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	RPL5	ENSG00000122406.14	ENST00000645300.1:ENST00000370321.8:ENST00000645119.1:ENST00000470843.5:ENST00000646852.1:ENST00000315741.5:ENST00000461952.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	94	2	1.60333	1.6575099999999998	1.71169	0.0413158	0.0253232	0.161534	0.12011
chr7	158749448	158749548	3689000	0	-	0.38	(0.378,0.408]	chr7	342342	4	SS5_PROX	SS5_PROX:INTRON	ESYT2	ENSG00000117868.18	ENST00000251527.10:ENST00000275418.13:ENST00000652148.1	protein_coding	protein_coding	protein_coding	protein_coding	8	64	2	1.63086	1.657395	1.68393	0.0503034	0.0252353	0.156383	0.133676
chrX	123985181	123985281	7716987	0	+	0.38	(0.378,0.408]	chrX	789462	214	INTRON	INTRON	STAG2	ENSG00000101972.20	ENST00000394477.5:ENST00000218089.13:ENST00000455404.5:ENST00000483575.5:ENST00000687810.1:ENST00000687071.1:ENST00000469481.1:ENST00000458700.5:ENST00000371160.5:ENST00000435103.5:ENST00000687852.1:ENST00000371145.8:ENST00000692982.1:ENST00000371157.7:ENST00000691035.1:ENST00000686802.1:ENST00000691383.1:ENST00000686127.1:ENST00000371144.7:ENST00000458176.5:ENST00000466748.5:ENST00000471107.1:ENST00000428941.5:ENST00000435215.5:ENST00000394478.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	64	2	1.63086	1.657395	1.68393	0.0503034	0.0252353	0.156383	0.133676
chr17	21000870	21000969	6742725	0	-	0.515152	(0.476,0.515]	chr17	661996	14	UTR3	UTR3:EXON_MRNA	USP22	ENSG00000124422.12	ENST00000261497.9:ENST00000537526.6	protein_coding	protein_coding	protein_coding	protein_coding	13	102	2	1.38299	1.657195	1.9314	0.0361854	0.00643736	0.152746	0.0697513
chr11	9314441	9314538	4909437	0	-	0.618557	(0.57,1]	chr11	460169	1	UTR5	UTR5:EXON_MRNA	TMEM41B	ENSG00000166471.11	ENST00000524543.5:ENST00000528080.6:ENST00000299596.8:ENST00000611268.4:ENST00000527813.5:ENST00000533723.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	13	45	2	1.22227	1.65717	2.09207	0.0397986	0.0121228	0.161534	0.090965
chr7	151518631	151518731	3674914	0	-	0.38	(0.378,0.408]	chr7	341212	2	SS5_PROX	SS5_PROX:INTRON	RHEB	ENSG00000106615.10	ENST00000262187.10:ENST00000472642.5:ENST00000478470.5:ENST00000496004.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	17	134	2	1.61904	1.6570749999999999	1.69511	0.0136145	0.00856143	0.0949306	0.083729
chr22	49594750	49594850	7602027	0	-	0.31	(0.28,0.32]	chr22	778566	1532	INTRON	INTRON	MIR3667HG	ENSG00000188511.13	ENST00000414287.5:ENST00000416411.1	lncRNA	lncRNA	lncRNA	lncRNA	9	86	2	1.31424	1.65706	1.99988	0.0580847	0.0228757	0.188651	0.118056
chr16	89441710	89441810	6543113	0	-	0.44	(0.408,0.44]	chr16	634281	100	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	15	117	2	1.38717	1.656905	1.92664	0.0391815	0.00298892	0.143072	0.0503738
chr1	110366175	110366275	182613	0	+	0.58	(0.57,1]	chr1	20257	98	INTRON	INTRON	LAMTOR5-AS1	ENSG00000224699.10	ENST00000626572.2	lncRNA	lncRNA	lncRNA	lncRNA	8	30	2	1.26343	1.6568450000000001	2.05026	0.0641008	0.0321326	0.178019	0.145026
chr10	97230670	97230768	4674532	0	-	0.428571	(0.408,0.44]	chr10	430759	4	INTRON	INTRON	ARHGAP19	ENSG00000213390.11	ENST00000492211.5:ENST00000358308.7:ENST00000358531.9:ENST00000487035.1:ENST00000371027.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	52	2	1.49789	1.6568049999999999	1.81572	0.0626779	0.0390091	0.175915	0.161009
chr11	65436652	65436752	4805909	0	+	0.42	(0.408,0.44]	chr11	446554	140	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	56	426	2	1.46847	1.65658	1.84469	0.00741739	4.20251e-4	0.074451	0.0183576
chr7	152136449	152136544	3678208	0	-	0.442105	(0.44,0.476]	chr7	341365	17	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	KMT2C	ENSG00000055609.21	ENST00000360104.8:ENST00000262189.11:ENST00000418061.2:ENST00000680877.1:ENST00000424877.6:ENST00000679560.1:ENST00000682040.1:ENST00000683640.1:ENST00000682116.1:ENST00000683120.1:ENST00000682824.1:ENST00000681923.1:ENST00000679393.1:ENST00000683200.1:ENST00000684768.1:ENST00000680029.1:ENST00000683337.1:ENST00000682629.1:ENST00000683178.1:ENST00000682137.1:ENST00000683502.1:ENST00000684261.1:ENST00000684685.1:ENST00000682283.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	43	326	2	1.23812	1.6565349999999999	2.07495	0.0206625	1.9609e-4	0.110999	0.0122528
chr1	211263790	211263889	305740	0	+	0.363636	(0.35,0.378]	chr1	35238	27	INTRON	INTRON	RCOR3	ENSG00000117625.14	ENST00000534478.5:ENST00000533469.5:ENST00000367006.8:ENST00000419091.7:ENST00000452621.6:ENST00000528926.5:ENST00000528408.5:ENST00000529572.5:ENST00000367005.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	90	2	1.28277	1.65652	2.03027	0.0385043	0.0185322	0.159277	0.108861
chr19	16637467	16637567	7150553	0	-	0.45	(0.44,0.476]	chr19	722432	23	INTRON	INTRON	SMIM7	ENSG00000214046.9	ENST00000465250.6:ENST00000481671.6:ENST00000594662.5:ENST00000597781.5:ENST00000598278.5	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	8	63	2	1.56252	1.656375	1.75023	0.0465207	0.0240995	0.151387	0.129929
chr7	12397670	12397770	3485379	0	-	0.34	(0.32,0.35]	chr7	325970	35	INTRON	INTRON	VWDE	ENSG00000146530.15	ENST00000275358.8:ENST00000452576.6:ENST00000521169.5:ENST00000326715.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	14	130	2	1.29183	1.656275	2.02072	0.0438084	0.0056508	0.162255	0.0653997
chr18	1406986	1407072	6942262	0	-	0.465116	(0.44,0.476]	chr18	686630	1	EXON_LNCRNA	EXON_LNCRNA:INTRON	LINC00470	ENSG00000132204.14	ENST00000657423.1:ENST00000657618.1:ENST00000669242.1:ENST00000660475.1:ENST00000653775.1:ENST00000661931.1:ENST00000412816.7:ENST00000667416.1:ENST00000661852.1:ENST00000661646.1:ENST00000667776.1:ENST00000654559.1:ENST00000661233.1:ENST00000653213.1:ENST00000659094.1:ENST00000660964.1:ENST00000577403.6:ENST00000669153.1:ENST00000657121.1:ENST00000655957.1:ENST00000659289.1:ENST00000665133.1:ENST00000671558.1:ENST00000666542.1:ENST00000669312.1:ENST00000581430.5:ENST00000658090.1:ENST00000667225.1:ENST00000582570.1	lncRNA	lncRNA	lncRNA	lncRNA	9	70	2	1.62674	1.656095	1.68545	0.0322071	0.0253995	0.133676	0.132543
chr5	177148800	177148899	2553850	0	+	0.474747	(0.44,0.476]	chr5	243927	115	INTRON	INTRON	NSD1	ENSG00000165671.22	ENST00000508896.6:ENST00000689549.1:ENST00000354179.9:ENST00000686993.1:ENST00000689326.1:ENST00000439151.7:ENST00000510954.6:ENST00000689345.1:ENST00000347982.9:ENST00000687453.1:ENST00000685206.1:ENST00000638627.3:ENST00000644863.2:ENST00000688613.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	70	2	1.62674	1.656095	1.68545	0.0322071	0.0253995	0.133676	0.132543
chr9	5007685	5007785	4096047	0	+	0.35	(0.32,0.35]	chr9	373235	213	INTRON	INTRON	JAK2	ENSG00000096968.14	ENST00000636127.1:ENST00000476574.5:ENST00000381652.4	protein_coding	protein_coding	protein_coding	protein_coding	11	91	2	1.34874	1.65581	1.96288	0.0362121	0.0239991	0.152849	0.119664
chr12	103774871	103774969	5401128	0	-	0.561224	(0.515,0.57]	chr12	515204	27	UTR3	UTR3:EXON_MRNA:INTRON	NT5DC3	ENSG00000111696.12	ENST00000447799.5:ENST00000392876.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	39	2	1.44089	1.655795	1.8707	0.0617046	0.0523213	0.193423	0.160182
chr7	135632966	135633066	3429107	0	+	0.54	(0.515,0.57]	chr7	319814	21	INTRON	INTRON	NUP205	ENSG00000155561.15	ENST00000285968.11:ENST00000607647.5:ENST00000477620.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	39	2	1.44089	1.655795	1.8707	0.0617046	0.0523213	0.193423	0.160182
chr3	196066375	196066466	1897387	0	-	0.494505	(0.476,0.515]	chr3	189941	4	INTRON	INTRON	TFRC	ENSG00000072274.13	ENST00000420415.5:ENST00000360110.9:ENST00000392396.7	protein_coding	protein_coding	protein_coding	protein_coding	55	408	2	1.5699	1.655705	1.74151	0.00519217	7.42219e-4	0.0633615	0.024913
chr5	111499094	111499193	2702660	0	-	0.343434	(0.32,0.35]	chr5	254388	32	UTR3	UTR3:EXON_MRNA	STARD4	ENSG00000164211.13	ENST00000296632.8:ENST00000512160.5	protein_coding	protein_coding	protein_coding	protein_coding	20	177	2	1.62297	1.65565	1.68833	0.0130252	0.00711353	0.093385	0.0756118
chr5	171397661	171397761	2546668	0	+	0.46	(0.44,0.476]	chr5	243099	43	INTRON	INTRON	NPM1	ENSG00000181163.14	ENST00000517671.5:ENST00000676613.1:ENST00000678186.1:ENST00000678267.1:ENST00000677297.1:ENST00000521672.6:ENST00000679190.1:ENST00000677467.1:ENST00000678280.1:ENST00000676625.1:ENST00000679006.1:ENST00000351986.10:ENST00000676504.1:ENST00000676589.1:ENST00000677357.1:ENST00000679233.1:ENST00000296930.10:ENST00000393820.2:ENST00000521260.2:ENST00000518587.2:ENST00000678774.1:ENST00000677600.1:ENST00000677741.1:ENST00000677325.1:ENST00000677672.1:ENST00000677907.1:ENST00000677904.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	47	2	1.38039	1.655615	1.93084	0.0762718	0.0443175	0.195539	0.162302
chr18	21743609	21743709	6879760	0	+	0.39	(0.378,0.408]	chr18	681868	14	INTRON	INTRON	MIB1	ENSG00000101752.13	ENST00000578646.5:ENST00000261537.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	50	2	1.53052	1.655315	1.78011	0.0744544	0.0356367	0.192012	0.151629
chr2	61510698	61510775	1130941	0	-	0.571429	(0.57,1]	chr2	121598	2	EXON_LNCRNA	EXON_LNCRNA:INTRON	XPO1	ENSG00000082898.19	ENST00000677110.1:ENST00000676553.1:ENST00000677556.1:ENST00000677814.1:ENST00000676771.1:ENST00000677803.1:ENST00000677239.1:ENST00000678790.1:ENST00000677928.1:ENST00000678182.1:ENST00000677150.1:ENST00000678172.1:ENST00000678360.1:ENST00000678081.1:ENST00000676889.1:ENST00000676783.1:ENST00000679035.1:ENST00000677422.1:ENST00000677417.1:ENST00000677813.1:ENST00000676999.1:ENST00000676667.1:ENST00000678263.1:ENST00000678877.1:ENST00000677933.1:ENST00000680228.1:ENST00000677289.1:ENST00000677190.1:ENST00000401558.7:ENST00000428210.5:ENST00000677290.1:ENST00000677850.1:ENST00000451765.6:ENST00000676789.1:ENST00000678741.1:ENST00000404992.6:ENST00000406957.5:ENST00000443240.5:ENST00000476585.5:ENST00000468259.1:ENST00000420673.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	15	61	2	1.23894	1.655185	2.07143	0.0497875	0.00151239	0.17488	0.0352794
chr8	89731539	89731639	3985020	0	-	0.39	(0.378,0.408]	chr8	364998	55	INTRON	INTRON	RIPK2-DT	ENSG00000251136.10	ENST00000688654.1:ENST00000690564.1:ENST00000661105.1:ENST00000685145.1:ENST00000519655.6:ENST00000656898.2:ENST00000685787.1:ENST00000693018.1:ENST00000691313.1:ENST00000691446.1:ENST00000524190.2:ENST00000691897.1:ENST00000685988.1:ENST00000691595.1:ENST00000688855.1:ENST00000504145.6:ENST00000685619.1:ENST00000653574.1:ENST00000687824.1:ENST00000521996.2:ENST00000692782.1:ENST00000655144.2:ENST00000687204.1:ENST00000689241.1:ENST00000686009.1:ENST00000685448.1	lncRNA	lncRNA	lncRNA	lncRNA	13	103	2	1.58299	1.655165	1.72734	0.0329718	0.00773535	0.133816	0.0786575
chr6	31797575	31797665	3079835	0	-	0.366667	(0.35,0.378]	chr6	287251	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	LSM2	ENSG00000204392.11	ENST00000375661.6:ENST00000477182.5:ENST00000470086.5:ENST00000470083.5:ENST00000493387.5:ENST00000491421.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	112	2	1.45393	1.6550699999999998	1.85621	0.0289548	0.00990167	0.140852	0.0838372
chr3	9389718	9389817	1611642	0	-	0.454545	(0.44,0.476]	chr3	166260	24	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	THUMPD3-AS1	ENSG00000206573.10	ENST00000468186.5:ENST00000661342.1:ENST00000519043.5:ENST00000657509.1:ENST00000685076.1:ENST00000687342.1:ENST00000685952.1:ENST00000521609.5:ENST00000520629.5:ENST00000523354.1:ENST00000654392.1:ENST00000665171.1:ENST00000668063.1:ENST00000522525.6:ENST00000664441.2:ENST00000469846.3:ENST00000481221.7:ENST00000661714.1:ENST00000665983.1:ENST00000660363.1:ENST00000667458.1:ENST00000520447.1:ENST00000524210.2:ENST00000664273.1:ENST00000521267.5:ENST00000467069.6:ENST00000520396.1:ENST00000494680.6	lncRNA	lncRNA	lncRNA	lncRNA	13	98	2	1.37921	1.65502	1.93083	0.0307245	0.00932249	0.143385	0.0817766
chr7	111282094	111282194	3621303	0	-	0.28	[0,0.28]	chr7	337093	3182	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	104	2	1.38026	1.65495	1.92964	0.0710571	0.0157154	0.185152	0.109464
chr1	35988946	35989046	71731	0	+	0.36	(0.35,0.378]	chr1	9169	40	INTRON	INTRON	AGO3	ENSG00000126070.20	ENST00000634486.1:ENST00000373191.9:ENST00000246314.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	67	2	1.43253	1.654895	1.87726	0.0486238	0.0297629	0.173047	0.12908
chr11	2983645	2983745	4891911	0	-	0.37	(0.35,0.378]	chr11	458361	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	NAP1L4	ENSG00000205531.13	ENST00000620138.4:ENST00000380542.9:ENST00000526115.5:ENST00000532325.6:ENST00000448187.5:ENST00000399614.6:ENST00000430811.5:ENST00000529361.5:ENST00000528968.5:ENST00000530064.5:ENST00000526842.5:ENST00000531291.5:ENST00000455338.6:ENST00000534372.1	protein_coding	protein_coding	protein_coding	protein_coding	7	56	2	1.43253	1.6548500000000002	1.87717	0.0555068	0.0486238	0.173047	0.165463
chr1	19459518	19459618	388649	0	-	0.57	(0.515,0.57]	chr1	46394	98	INTRON	INTRON	CAPZB	ENSG00000077549.19	ENST00000264202.8:ENST00000264203.7:ENST00000375142.5:ENST00000482808.2:ENST00000674449.1:ENST00000674390.1:ENST00000375144.6:ENST00000674432.1:ENST00000433834.5:ENST00000459967.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	34	2	1.60221	1.654805	1.7074	0.0779432	0.0581855	0.196685	0.188704
chr18	9124174	9124273	6868814	0	+	0.333333	(0.32,0.35]	chr18	680531	11	INTRON	INTRON	NDUFV2	ENSG00000178127.13	ENST00000318388.11:ENST00000400033.1:ENST00000465096.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	85	2	1.36759	1.654805	1.94202	0.0486128	0.0294508	0.153946	0.142135
chr7	77905669	77905767	3345029	0	+	0.55102	(0.515,0.57]	chr7	311520	34	INTRON	INTRON	PHTF2	ENSG00000006576.17	ENST00000422959.7:ENST00000416283.6:ENST00000307305.12:ENST00000424760.5:ENST00000415251.6:ENST00000275575.11:ENST00000450574.5:ENST00000248550.7	protein_coding	protein_coding	protein_coding	protein_coding	5	34	2	1.60221	1.654805	1.7074	0.0779432	0.0581855	0.196685	0.188704
chr2	15549898	15549997	1073050	0	-	0.545455	(0.515,0.57]	chr2	114459	102	INTRON	INTRON	NBAS	ENSG00000151779.13	ENST00000281513.10	protein_coding	protein_coding	protein_coding	protein_coding	9	57	2	1.44339	1.6547450000000001	1.8661	0.0352285	0.0274846	0.150284	0.123904
chr22	19486389	19486488	7476900	0	+	0.313131	(0.28,0.32]	chr22	762407	20	INTRON	INTRON	CDC45	ENSG00000093009.11	ENST00000407835.6:ENST00000437685.6:ENST00000483431.5:ENST00000438587.6:ENST00000672837.1:ENST00000263201.7:ENST00000404724.7:ENST00000487669.5:ENST00000428937.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	71	2	1.40698	1.654735	1.90249	0.0778529	0.0261803	0.196685	0.133676
chr5	87389306	87389405	2668676	0	-	0.313131	(0.28,0.32]	chr5	252553	123	INTRON	INTRON	CCNH	ENSG00000134480.16	ENST00000645953.1:ENST00000646883.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	7	71	2	1.40698	1.654735	1.90249	0.0778529	0.0261803	0.196685	0.133676
chr5	139584879	139584979	2500739	0	+	0.46	(0.44,0.476]	chr5	239026	221	INTRON	INTRON	UBE2D2	ENSG00000131508.16	ENST00000511725.5:ENST00000505007.5:ENST00000398733.8:ENST00000510470.1:ENST00000398734.8:ENST00000505548.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	85	2	1.34977	1.6546949999999998	1.95962	0.0522828	0.00707371	0.160182	0.0754923
chr14	101888692	101888791	5819787	0	+	0.484848	(0.476,0.515]	chr14	551895	48	INTRON	INTRON	PPP2R5C	ENSG00000078304.20	ENST00000694906.1:ENST00000422945.6:ENST00000328724.9:ENST00000350249.7:ENST00000557621.5:ENST00000334743.9:ENST00000445439.7:ENST00000557095.5:ENST00000554137.5:ENST00000556218.5:ENST00000557534.1:ENST00000557716.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	55	2	1.52615	1.65465	1.78315	0.0739267	0.0215899	0.190914	0.123836
chr6	99422817	99422917	3166123	0	-	0.42	(0.408,0.44]	chr6	295334	60	INTRON	INTRON	PNISR	ENSG00000132424.17	ENST00000681615.1:ENST00000369239.10:ENST00000647811.1:ENST00000481229.2:ENST00000679525.1:ENST00000681611.1:ENST00000438806.5:ENST00000478777.5:ENST00000492294.5:ENST00000498075.1:ENST00000466057.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	18	139	2	1.14366	1.6545199999999998	2.16538	0.0589879	8.63582e-4	0.167915	0.0266494
chr15	34536389	34536489	6133419	0	-	0.31	(0.28,0.32]	chr15	584359	4	SS3_PROX	SS3_PROX:INTRON	GOLGA8B	ENSG00000215252.12	ENST00000683415.1:ENST00000569100.5:ENST00000484716.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	72	2	1.54521	1.6544949999999998	1.76378	0.0548272	0.0395495	0.165463	0.161534
chr6	43770210	43770309	2872058	0	+	0.727273	(0.57,1]	chr6	272340	1	UTR5	UTR5:EXON_MRNA	VEGFA	ENSG00000112715.26	ENST00000476772.5:ENST00000672860.3:ENST00000372067.8:ENST00000425836.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	64	214	2	1.28154	1.65393	2.02632	0.00433874	2.37799e-4	0.0601147	0.0141642
chr7	119846838	119846938	3629809	0	-	0.33	(0.32,0.35]	chr7	337335	456	INTRON	INTRON	LINC02476	ENSG00000225546.6	ENST00000660268.1:ENST00000431071.5:ENST00000426413.2	lncRNA	lncRNA	lncRNA	lncRNA	6	57	2	1.61669	1.65388	1.69107	0.0578816	0.0517392	0.188651	0.159306
chr18	9915065	9915165	6873350	0	+	0.6	(0.57,1]	chr18	680860	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	VAPA	ENSG00000101558.14	ENST00000400000.7:ENST00000577901.5:ENST00000340541.4:ENST00000585042.5:ENST00000578314.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	36	2	1.64415	1.65387	1.66359	0.0342575	0.0224545	0.135558	0.124921
chr2	131211183	131211283	865470	0	+	0.61	(0.57,1]	chr2	97180	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	PLEKHB2:POTEE	ENSG00000115762.17:ENSG00000188219.16	ENST00000404460.5:ENST00000683005.1	protein_coding	protein_coding	protein_coding	protein_coding	9	36	2	1.50772	1.65375	1.79978	0.0388955	0.0199509	0.16071	0.109608
chr17	31254093	31254192	6592774	0	+	0.444444	(0.44,0.476]	chr17	641229	12	UTR3	UTR3:EXON_MRNA:INTRON	NF1	ENSG00000196712.20	ENST00000696138.1:ENST00000356175.7:ENST00000691014.1:ENST00000358273.9:ENST00000579081.5:ENST00000495910.6:ENST00000456735.6:ENST00000493220.5:ENST00000466819.5:ENST00000479614.1:ENST00000687863.1:ENST00000696140.1:ENST00000696141.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	63	2	1.38039	1.653715	1.92704	0.0762718	0.0128054	0.195539	0.0990564
chr22	21781866	21781966	7560522	0	-	0.42	(0.408,0.44]	chr22	773360	85	INTRON	INTRON	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	14	105	2	1.2196	1.6536650000000002	2.08773	0.051177	0.00404379	0.157813	0.0578376
chr1	193088159	193088258	284562	0	+	0.373737	(0.35,0.378]	chr1	32726	33	UTR3	UTR3:EXON_MRNA:INTRON	RO60	ENSG00000116747.13	ENST00000432079.5:ENST00000400968.7:ENST00000367443.5:ENST00000367444.7:ENST00000367445.7	protein_coding	protein_coding	protein_coding	protein_coding	67	547	2	1.41071	1.65363	1.89655	0.00496532	9.43776e-4	0.0646039	0.028105
chr1	219180125	219180224	318440	0	+	0.484848	(0.476,0.515]	chr1	36451	3	INTRON	INTRON	LYPLAL1	ENSG00000143353.12	ENST00000460522.5:ENST00000366927.3:ENST00000496776.5:ENST00000366928.10:ENST00000477938.5:ENST00000463964.5:ENST00000483635.5:ENST00000474379.5:ENST00000469590.5:ENST00000478794.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	48	2	1.61586	1.65362	1.69138	0.0567093	0.0481165	0.185107	0.153019
chr4	70919438	70919538	1970676	0	+	0.33	(0.32,0.35]	chr4	197571	165	INTRON	INTRON	MOB1B	ENSG00000173542.9	ENST00000502869.5:ENST00000509041.5:ENST00000309395.7:ENST00000396051.2:ENST00000511449.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	72	2	1.61591	1.6534900000000001	1.69107	0.0517392	0.0277247	0.159306	0.137011
chr5	91382412	91382512	2674985	0	-	0.32	(0.28,0.32]	chr5	253126	2	SS5_PROX	SS5_PROX:INTRON	ARRDC3	ENSG00000113369.9	ENST00000265138.4:ENST00000507075.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	93	2	1.43837	1.653175	1.86798	0.0335733	0.0328251	0.145164	0.134145
chrX	71292184	71292279	7678090	0	+	0.505263	(0.476,0.515]	chrX	786085	3	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	NONO	ENSG00000147140.17	ENST00000677446.1:ENST00000677274.1:ENST00000535149.5:ENST00000420903.6:ENST00000678335.1:ENST00000678830.1:ENST00000677826.1:ENST00000473525.2:ENST00000678437.1:ENST00000676499.1:ENST00000676495.1:ENST00000678323.1:ENST00000677766.1:ENST00000679267.1:ENST00000373856.8:ENST00000679254.1:ENST00000677879.1:ENST00000677245.1:ENST00000373841.5:ENST00000276079.13:ENST00000679029.1:ENST00000677218.1:ENST00000676797.1:ENST00000679062.1:ENST00000678660.1:ENST00000677014.1:ENST00000678231.1:ENST00000474431.5:ENST00000677612.1:ENST00000677977.1:ENST00000471419.7:ENST00000472185.1:ENST00000413858.5:ENST00000486613.6:ENST00000450092.6:ENST00000454976.2:ENST00000418921.1:ENST00000490044.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	64	2	1.48023	1.65309	1.82595	0.0559072	0.0202339	0.18407	0.109955
chr10	72625409	72625508	4646925	0	-	0.464646	(0.44,0.476]	chr10	427462	583	INTRON	INTRON	MICU1	ENSG00000107745.20	ENST00000361114.10:ENST00000642044.1:ENST00000635239.1:ENST00000604238.2:ENST00000603011.5:ENST00000604025.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	51	2	1.40212	1.65301	1.9039	0.0524678	0.0501498	0.178047	0.156383
chr11	57800402	57800497	4793528	0	+	0.442105	(0.44,0.476]	chr11	443757	5	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:INTRON	ENSG00000288534:CTNND1	ENSG00000288534.1:ENSG00000198561.16	ENST00000673781.1:ENST00000673810.1:ENST00000674116.1:ENST00000674060.1:ENST00000524630.5:ENST00000529919.5:ENST00000533189.1:ENST00000682741.1:ENST00000358694.10:ENST00000361332.8:ENST00000361391.10:ENST00000361796.9:ENST00000415361.6:ENST00000426142.6:ENST00000428599.6:ENST00000525902.5:ENST00000526357.5:ENST00000526772.5:ENST00000527467.5:ENST00000528232.5:ENST00000528621.5:ENST00000529526.5:ENST00000529873.5:ENST00000529986.5:ENST00000530094.5:ENST00000530748.5:ENST00000531014.5:ENST00000532245.5:ENST00000532463.5:ENST00000532649.5:ENST00000532787.5:ENST00000532844.5:ENST00000533667.5:ENST00000534579.5:ENST00000399050.10:ENST00000526938.5:ENST00000531007.2:ENST00000674015.1:ENST00000673826.1:ENST00000673683.1:ENST00000674106.1:ENST00000681984.1:ENST00000683906.1:ENST00000673661.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	51	2	1.40212	1.65301	1.9039	0.0524678	0.0501498	0.178047	0.156383
chr12	104291204	104291304	5210052	0	+	0.48	(0.476,0.515]	chr12	493209	1	SS5_PROX	SS5_PROX:INTRON	TXNRD1	ENSG00000198431.17	ENST00000525566.6:ENST00000526266.5:ENST00000503506.6:ENST00000526691.5:ENST00000531691.5:ENST00000526390.5:ENST00000531689.5:ENST00000529546.5:ENST00000529751.1:ENST00000528079.6:ENST00000526580.5:ENST00000529784.5:ENST00000524698.5:ENST00000527688.5:ENST00000527335.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	72	2	1.62505	1.6529850000000001	1.68092	0.0474026	0.0210589	0.169265	0.112542
chr7	152415837	152415937	3681092	0	-	0.38	(0.378,0.408]	chr7	341660	568	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000682301.1:ENST00000452749.2:ENST00000680867.1:ENST00000683800.1:ENST00000684278.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	14	112	2	1.48475	1.6528399999999999	1.82093	0.0353336	0.00507045	0.137535	0.0646039
chr10	125137506	125137606	4714110	0	-	0.37	(0.35,0.378]	chr10	434926	1	SS5_PROX	SS5_PROX:INTRON	CTBP2	ENSG00000175029.17	ENST00000337195.9:ENST00000411419.6:ENST00000494626.6:ENST00000531469.5:ENST00000460976.5:ENST00000476817.1:ENST00000530884.1:ENST00000530930.1:ENST00000467395.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	73	2	1.34988	1.652835	1.95579	0.0498069	0.0234538	0.17488	0.11867
chr5	55337231	55337330	2355384	0	+	0.323232	(0.32,0.35]	chr5	227152	80	INTRON	INTRON	MTREX	ENSG00000039123.16	ENST00000230640.10:ENST00000506750.5:ENST00000504997.1:ENST00000505565.5:ENST00000502953.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	92	2	1.42542	1.652815	1.88021	0.0718205	0.00751788	0.187046	0.0773151
chr22	23194075	23194174	7483339	0	+	0.474747	(0.44,0.476]	chr22	763531	115	INTRON	INTRON	BCR	ENSG00000186716.21	ENST00000479188.5:ENST00000359540.7:ENST00000305877.13	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	94	2	1.57262	1.6528049999999999	1.73299	0.0230575	0.014376	0.126603	0.0968323
chr22	21770212	21770310	7560404	0	-	0.520408	(0.515,0.57]	chr22	773354	5	INTRON	INTRON	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	16	109	2	1.22131	1.6527749999999999	2.08424	0.0614604	8.573e-4	0.173483	0.0265787
chr17	46134331	46134431	6784279	0	-	0.38	(0.378,0.408]	chr17	669216	131	INTRON	INTRON	KANSL1	ENSG00000120071.15	ENST00000574590.6:ENST00000572904.6:ENST00000432791.7:ENST00000575318.6:ENST00000638275.1:ENST00000262419.10:ENST00000648792.1:ENST00000639531.1:ENST00000639150.1:ENST00000639853.1:ENST00000571698.2:ENST00000639375.1:ENST00000638269.1:ENST00000576248.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	64	2	1.63458	1.652655	1.67073	0.0573057	0.0219426	0.167723	0.123836
chrX	301394	301492	7605472	0	+	0.540816	(0.515,0.57]	chrX	779420	22	UTR3	UTR3:EXON_MRNA	PLCXD1	ENSG00000182378.15	ENST00000399012.6:ENST00000381657.8	protein_coding	protein_coding	protein_coding	protein_coding	26	167	2	1.56777	1.652485	1.7372	0.00828511	0.00231205	0.0774402	0.0441859
chr3	196352023	196352122	1898846	0	-	0.414141	(0.408,0.44]	chr3	190149	45	UTR3	UTR3:EXON_MRNA	UBXN7	ENSG00000163960.12	ENST00000296328.9	protein_coding	protein_coding	protein_coding	protein_coding	13	87	2	1.22006	1.65246	2.08486	0.0414473	0.0145898	0.161692	0.0981689
chr12	64618044	64618144	5155073	0	+	0.28	[0,0.28]	chr12	488093	65	INTRON	INTRON	RASSF3	ENSG00000153179.13	ENST00000637125.1:ENST00000542104.6:ENST00000283172.8:ENST00000336061.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	67	2	1.49274	1.65237	1.812	0.0729149	0.0592697	0.189982	0.189235
chr3	152284740	152284840	1535142	0	+	0.38	(0.378,0.408]	chr3	159981	146	INTRON	INTRON	MBNL1	ENSG00000152601.18	ENST00000477171.1:ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000461436.1:ENST00000495875.6:ENST00000324210.10:ENST00000493459.5:ENST00000459747.1:ENST00000460591.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	86	2	1.58835	1.6522700000000001	1.71619	0.0300647	0.0172286	0.129153	0.111597
chr1	52391283	52391381	456935	0	-	0.336735	(0.32,0.35]	chr1	54887	16	INTRON	INTRON	ORC1	ENSG00000085840.13	ENST00000371568.8:ENST00000371566.1	protein_coding	protein_coding	protein_coding	protein_coding	10	90	2	1.64353	1.65218	1.66083	0.0398512	0.0178056	0.143072	0.113505
chr15	84715624	84715724	6252024	0	-	0.51	(0.476,0.515]	chr15	596690	2	SS5_PROX	SS5_PROX:INTRON	SEC11A	ENSG00000140612.14	ENST00000559729.5:ENST00000268220.12:ENST00000560266.5:ENST00000558134.5:ENST00000558217.5:ENST00000455959.7:ENST00000560409.5:ENST00000558196.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	55	2	1.50151	1.652175	1.80284	0.054954	0.033161	0.165463	0.145899
chr1	46306808	46306907	96567	0	+	0.454545	(0.44,0.476]	chr1	12964	26	INTRON	INTRON	UQCRH	ENSG00000173660.12	ENST00000311672.10:ENST00000489056.5:ENST00000486951.1:ENST00000496387.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	92	2	1.41212	1.65206	1.892	0.0358041	0.00935701	0.138791	0.0858596
chr16	29526868	29526967	6470834	0	-	0.272727	[0,0.28]	chr16	625147	210	INTRON	INTRON	ENSG00000288632	ENSG00000288632.1	ENST00000675579.1	lncRNA	lncRNA	lncRNA	lncRNA	8	93	2	1.49535	1.65204	1.80873	0.0670881	0.0234525	0.183051	0.128429
chr3	152326719	152326819	1535566	0	+	0.16	[0,0.28]	chr3	159996	244	INTRON	INTRON	MBNL1	ENSG00000152601.18	ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000495875.6:ENST00000324210.10:ENST00000493459.5:ENST00000459747.1:ENST00000460591.5:ENST00000545754.5:ENST00000357472.7:ENST00000324196.9:ENST00000498502.5:ENST00000463374.5:ENST00000485910.5:ENST00000465907.6:ENST00000492948.5:ENST00000485509.5:ENST00000464596.5	protein_coding	protein_coding	protein_coding	protein_coding	15	171	2	1.49704	1.6519849999999998	1.80693	0.0368845	0.00773953	0.139131	0.0786967
chr11	46805169	46805268	4948345	0	-	0.414141	(0.408,0.44]	chr11	463813	30	INTRON	INTRON	CKAP5	ENSG00000175216.15	ENST00000529230.6:ENST00000312055.9:ENST00000354558.7	protein_coding	protein_coding	protein_coding	protein_coding	17	124	2	1.59914	1.651955	1.70477	0.0215835	0.00687981	0.114814	0.0749507
chr8	31118288	31118385	3728798	0	+	0.298969	(0.28,0.32]	chr8	346634	14	INTRON	INTRON	WRN	ENSG00000165392.11	ENST00000650667.1:ENST00000298139.7:ENST00000521620.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	20	190	2	1.22022	1.65183	2.08344	0.0357276	0.00383778	0.152009	0.0542786
chr7	105055182	105055282	3375034	0	+	0.36	(0.35,0.378]	chr7	315877	138	INTRON	INTRON	KMT2E	ENSG00000005483.22	ENST00000622386.2:ENST00000257745.9:ENST00000334884.9:ENST00000311117.8:ENST00000478990.5:ENST00000495267.5:ENST00000476671.5:ENST00000667857.1:ENST00000474203.5:ENST00000482560.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	14	118	2	1.46754	1.651685	1.83583	0.0383604	0.00495196	0.142063	0.0646039
chr11	9290914	9291013	4909196	0	-	0.454545	(0.44,0.476]	chr11	460149	20	INTRON	INTRON	TMEM41B	ENSG00000166471.11	ENST00000524543.5:ENST00000528080.6:ENST00000299596.8:ENST00000611268.4:ENST00000527813.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	64	2	1.53197	1.65149	1.77101	0.0693975	0.0211313	0.184298	0.122929
chr4	55400448	55400548	1960634	0	+	0.52	(0.515,0.57]	chr4	196546	8	INTRON	INTRON	TMEM165	ENSG00000134851.13	ENST00000381334.10:ENST00000506198.5:ENST00000508404.5:ENST00000511710.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	31	198	2	1.35187	1.65143	1.95099	0.0140275	6.702e-4	0.0959618	0.0235011
chr7	148844474	148844574	3670362	0	-	0.4	(0.378,0.408]	chr7	340616	71	INTRON	INTRON	EZH2	ENSG00000106462.12	ENST00000683292.1:ENST00000320356.7:ENST00000492143.5:ENST00000478654.5:ENST00000350995.6:ENST00000460911.5:ENST00000683744.1:ENST00000682317.1:ENST00000682263.1:ENST00000684300.1:ENST00000476773.5:ENST00000483967.5:ENST00000498186.5:ENST00000483012.1:ENST00000682401.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	97	2	1.17786	1.6511799999999999	2.1245	0.0538684	0.00724232	0.181196	0.0729826
chr21	38106726	38106826	7463953	0	-	0.27	[0,0.28]	chr21	760303	70	INTRON	INTRON	DSCR4	ENSG00000184029.9	ENST00000398948.5:ENST00000328264.7:ENST00000482032.1	lncRNA	lncRNA	lncRNA	lncRNA	13	132	2	1.444	1.651165	1.85833	0.0378973	0.0231577	0.141283	0.127017
chr10	68332235	68332335	4440760	0	+	0.69	(0.57,1]	chr10	409478	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	HNRNPH3	ENSG00000096746.18	ENST00000469172.5:ENST00000461310.5:ENST00000265866.12:ENST00000480987.5:ENST00000486854.5:ENST00000467249.1:ENST00000354695.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	29	111	2	1.50831	1.6509	1.79349	0.00586904	0.00128988	0.0668371	0.0333764
chr16	89894837	89894937	6422658	0	+	0.56	(0.515,0.57]	chr16	616767	4	SS3_PROX	SS3_PROX:INTRON	TCF25	ENSG00000141002.20	ENST00000640279.1:ENST00000263347.11:ENST00000263346.13:ENST00000568412.5:ENST00000566751.5:ENST00000562256.5:ENST00000568409.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	10	65	2	1.39706	1.650845	1.90463	0.041152	0.0141753	0.161534	0.0959618
chr22	19120628	19120728	7551997	0	-	0.53	(0.515,0.57]	chr22	771903	308	INTRON	INTRON	DGCR2	ENSG00000070413.20	ENST00000537045.5:ENST00000545799.5:ENST00000263196.12:ENST00000389262.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	14	100	2	1.44237	1.650795	1.85922	0.0456196	0.00342369	0.164236	0.0517761
chr9	98847969	98848066	4174064	0	+	0.474227	(0.44,0.476]	chr9	380403	15	INTRON	INTRON	GALNT12	ENSG00000119514.7	ENST00000375011.4	protein_coding	protein_coding	protein_coding	protein_coding	7	55	2	1.42812	1.6506850000000002	1.87325	0.0673866	0.0265709	0.183355	0.134088
chr16	87865912	87866011	6539062	0	-	0.515152	(0.476,0.515]	chr16	633647	24	INTRON	INTRON	SLC7A5	ENSG00000103257.9	ENST00000261622.5	protein_coding	protein_coding	protein_coding	protein_coding	7	51	2	1.43644	1.65068	1.86492	0.0550347	0.047372	0.169265	0.165463
chr7	7203446	7203545	3274799	0	+	0.353535	(0.35,0.378]	chr7	304569	203	INTRON	INTRON	C1GALT1	ENSG00000106392.11	ENST00000429911.5:ENST00000436587.7:ENST00000467716.1:ENST00000476068.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	50	2	1.54563	1.65062	1.75561	0.0739399	0.046845	0.190914	0.167716
chr9	124725307	124725407	4348755	0	-	0.4	(0.378,0.408]	chr9	399255	1296	INTRON	INTRON	NR6A1	ENSG00000148200.17	ENST00000487099.7:ENST00000373584.7:ENST00000416460.6:ENST00000344523.8	protein_coding	protein_coding	protein_coding	protein_coding	14	111	2	1.62294	1.650555	1.67817	0.0222846	0.00957714	0.116433	0.0865341
chr13	28293395	28293492	5462400	0	+	0.371134	(0.35,0.378]	chr13	523342	10	UTR3	UTR3:EXON_MRNA	PAN3	ENSG00000152520.14	ENST00000380958.8:ENST00000399613.1	protein_coding	protein_coding	protein_coding	protein_coding	15	124	2	1.46598	1.6503700000000001	1.83476	0.0196231	0.0107492	0.120063	0.086626
chr5	53939719	53939819	2617201	0	-	0.3	(0.28,0.32]	chr5	248835	277	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	81	2	1.57779	1.6503299999999999	1.72287	0.0502605	0.0286502	0.156383	0.139456
chr2	235496847	235496947	1041363	0	+	0.42	(0.408,0.44]	chr2	111217	16	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	67	2	1.29431	1.6503	2.00629	0.0580322	0.0189661	0.188651	0.108861
chr4	2899633	2899733	1915599	0	+	0.47	(0.44,0.476]	chr4	192316	3	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	ADD1	ENSG00000087274.19	ENST00000683351.1:ENST00000398125.5:ENST00000264758.11:ENST00000508684.5:ENST00000513328.6:ENST00000509039.5:ENST00000503455.6:ENST00000355842.7:ENST00000651918.1:ENST00000503169.5:ENST00000398129.5:ENST00000398123.6:ENST00000506157.1:ENST00000514940.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	62	2	1.39666	1.65028	1.9039	0.0501498	0.0344316	0.156383	0.147767
chr2	151452503	151452603	893651	0	+	0.38	(0.378,0.408]	chr2	98982	4	INTRON	INTRON	RIF1	ENSG00000080345.18	ENST00000453091.6:ENST00000428287.6:ENST00000444746.7:ENST00000243326.9:ENST00000414861.6:ENST00000430328.6	protein_coding	protein_coding	protein_coding	protein_coding	7	57	2	1.63458	1.6502599999999998	1.66594	0.0573057	0.0320222	0.167723	0.144995
chr11	70415052	70415152	4821785	0	+	0.56	(0.515,0.57]	chr11	449621	4	SS5_PROX	SS5_PROX:INTRON	CTTN	ENSG00000085733.16	ENST00000346329.7:ENST00000301843.13:ENST00000376561.7:ENST00000415461.2:ENST00000525276.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	52	2	1.54678	1.65025	1.75372	0.0386904	0.0324987	0.145164	0.14279
chr4	55423113	55423207	1960871	0	+	0.553191	(0.515,0.57]	chr4	196578	1	EXON_MRNA	EXON_MRNA:INTRON	TMEM165	ENSG00000134851.13	ENST00000381334.10:ENST00000506198.5:ENST00000508404.5:ENST00000514904.5:ENST00000508561.5:ENST00000608091.1:ENST00000509575.1:ENST00000506103.2:ENST00000515591.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	18	116	2	1.59962	1.650225	1.70083	0.0134611	0.00520656	0.0947688	0.0655877
chr4	470676	470776	2092886	0	-	0.44	(0.408,0.44]	chr4	206783	259	INTRON	INTRON	ABCA11P:ZNF721	ENSG00000251595.7:ENSG00000182903.16	ENST00000451020.6:ENST00000514396.5:ENST00000507854.1:ENST00000515578.5:ENST00000506646.5:ENST00000507078.1:ENST00000511833.3:ENST00000338977.5:ENST00000505900.1	protein_coding	protein_coding	protein_coding:transcribed_processed_pseudogene	protein_coding:nonsense_mediated_decay:processed_transcript	11	83	2	1.17742	1.6502249999999998	2.12303	0.0738735	0.00586883	0.190914	0.0690758
chr4	39829265	39829364	2130675	0	-	0.40404	(0.378,0.408]	chr4	210063	34	INTRON	INTRON	PDS5A	ENSG00000121892.15	ENST00000303538.13	protein_coding	protein_coding	protein_coding	protein_coding	7	57	2	1.6165	1.650215	1.68393	0.0503034	0.0374185	0.156383	0.155878
chr12	108689172	108689272	5406351	0	-	0.38	(0.378,0.408]	chr12	516011	104	INTRON	INTRON	CORO1C	ENSG00000110880.11	ENST00000261401.8:ENST00000420959.6:ENST00000541050.5:ENST00000549384.5:ENST00000421578.6:ENST00000550542.5:ENST00000549772.5:ENST00000552871.5:ENST00000547294.5:ENST00000550032.5:ENST00000551550.5:ENST00000546571.5:ENST00000551044.1:ENST00000547170.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	53	2	1.41307	1.65018	1.88729	0.0532327	0.0510067	0.176593	0.162538
chr10	28549149	28549249	4413965	0	+	0.45	(0.44,0.476]	chr10	407148	107	INTRON	INTRON	WAC	ENSG00000095787.24	ENST00000680735.1:ENST00000375664.8:ENST00000428935.6:ENST00000651598.1:ENST00000628285.3:ENST00000681112.1:ENST00000679570.1:ENST00000375646.5:ENST00000354911.9:ENST00000347934.8:ENST00000420266.6:ENST00000651885.1:ENST00000651441.1:ENST00000679398.1:ENST00000424454.5:ENST00000442148.6:ENST00000448193.5:ENST00000414108.6:ENST00000679428.1:ENST00000439676.5:ENST00000345541.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	22	152	2	1.39659	1.650145	1.9037	0.0118504	0.00735504	0.0962115	0.0739587
chr8	43122975	43123074	3746466	0	+	0.333333	(0.32,0.35]	chr8	348632	2	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	POMK	ENSG00000185900.11	ENST00000676193.1:ENST00000331373.10:ENST00000674937.1:ENST00000614426.2:ENST00000674782.1:ENST00000676178.1:ENST00000674676.1:ENST00000675675.1:ENST00000675322.1:ENST00000674646.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	20	179	2	1.27349	1.6501000000000001	2.02671	0.0394712	0.00169095	0.143072	0.0381936
chr4	126623089	126623189	2236940	0	-	0.38	(0.378,0.408]	chr4	219023	1576	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	9	73	2	1.48005	1.650045	1.82004	0.0596711	0.012605	0.168954	0.0980801
chr6	18245078	18245173	3069050	0	-	0.463158	(0.44,0.476]	chr6	285188	6	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	DEK	ENSG00000124795.17	ENST00000652689.1:ENST00000652292.1:ENST00000651624.1:ENST00000515770.2:ENST00000651992.1:ENST00000507591.2:ENST00000505224.5:ENST00000244776.11:ENST00000652576.1:ENST00000512145.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	78	2	1.44103	1.650035	1.85904	0.029889	0.0244867	0.131869	0.129138
chr9	131167614	131167713	4216062	0	+	0.30303	(0.28,0.32]	chr9	386613	31	INTRON	INTRON	NUP214	ENSG00000126883.19	ENST00000695497.1:ENST00000695498.1:ENST00000695496.1:ENST00000695495.1:ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000525980.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	102	2	1.56481	1.65002	1.73523	0.0339805	0.0234982	0.146815	0.118716
chr1	16347962	16348062	382575	0	-	0.34	(0.32,0.35]	chr1	44888	322	INTRON	INTRON	FBXO42	ENSG00000037637.11	ENST00000375592.8	protein_coding	protein_coding	protein_coding	protein_coding	18	144	2	1.46639	1.64967	1.83295	0.0224097	0.0116228	0.11692	0.0962115
chr14	23070624	23070724	5842728	0	-	0.52	(0.515,0.57]	chr14	555612	1	SS5_PROX	SS5_PROX:INTRON	ACIN1	ENSG00000100813.15	ENST00000605057.6:ENST00000557515.5:ENST00000262710.5:ENST00000457657.5:ENST00000357481.6:ENST00000338631.10:ENST00000397341.7:ENST00000555053.5:ENST00000555566.1:ENST00000553721.5:ENST00000557432.2:ENST00000555352.2:ENST00000553501.1:ENST00000554979.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	57	2	1.48827	1.649635	1.811	0.0325989	0.0301583	0.142572	0.133687
chr15	51910193	51910291	6027958	0	+	0.336735	(0.32,0.35]	chr15	574346	15	UTR3	UTR3:EXON_MRNA:INTRON	TMOD3	ENSG00000138594.14	ENST00000308580.12:ENST00000560549.5:ENST00000561438.5:ENST00000560725.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	10	90	2	1.437	1.64962	1.86224	0.0386366	0.0203914	0.159793	0.11076
chr19	36218794	36218894	7057461	0	+	0.5	(0.476,0.515]	chr19	704664	2	INTRON	INTRON	ZNF146	ENSG00000167635.12	ENST00000456324.5:ENST00000591063.5:ENST00000443387.3:ENST00000586094.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	91	2	1.62782	1.649575	1.67133	0.0274391	0.012282	0.123904	0.0970106
chr8	129541643	129541743	4060699	0	-	0.38	(0.378,0.408]	chr8	369648	311	INTRON	INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1:ENST00000676273.1:ENST00000667643.1:ENST00000668791.1:ENST00000663716.1:ENST00000663572.1:ENST00000676148.1:ENST00000667962.1:ENST00000674877.1:ENST00000675316.1:ENST00000674656.1:ENST00000446592.7:ENST00000667341.1:ENST00000675186.1:ENST00000652971.1:ENST00000661447.1:ENST00000674863.1:ENST00000675498.1:ENST00000675527.1:ENST00000676108.1:ENST00000657647.1:ENST00000675589.1:ENST00000675913.1:ENST00000675109.1:ENST00000671632.1:ENST00000671311.1:ENST00000676099.1:ENST00000660652.1:ENST00000675522.1:ENST00000675183.1:ENST00000658861.1:ENST00000663991.1:ENST00000675044.1:ENST00000675435.1:ENST00000674639.1:ENST00000676069.1:ENST00000675532.1:ENST00000674762.1:ENST00000523151.6:ENST00000675948.1:ENST00000665364.1:ENST00000657251.1:ENST00000675166.1:ENST00000674883.1:ENST00000675867.1:ENST00000674580.1:ENST00000675393.1:ENST00000520048.1:ENST00000674906.1:ENST00000676030.1:ENST00000670588.1:ENST00000675072.1:ENST00000664936.1:ENST00000652914.1:ENST00000657069.1	lncRNA	lncRNA	lncRNA	lncRNA	14	111	2	1.27476	1.64946	2.02416	0.0493476	0.00361901	0.156036	0.0554656
chr9	121179911	121180010	4336187	0	-	0.272727	[0,0.28]	chr9	398423	19	UTR3	UTR3:EXON_MRNA	RAB14	ENSG00000119396.11	ENST00000373840.9	protein_coding	protein_coding	protein_coding	protein_coding	9	91	2	1.39834	1.64916	1.89998	0.0599553	0.0403476	0.169548	0.161534
chr12	104349512	104349612	5210656	0	+	0.34	(0.32,0.35]	chr12	493302	12	UTR3	UTR3:EXON_MRNA	TXNRD1	ENSG00000198431.17	ENST00000525566.6:ENST00000503506.6:ENST00000526691.5:ENST00000526390.5:ENST00000527688.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	13	115	2	1.14289	1.64906	2.15523	0.0771493	0.00338289	0.196285	0.0534907
chr1	8878114	8878214	374305	0	-	0.59	(0.57,1]	chr1	43665	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ENO1	ENSG00000074800.16	ENST00000234590.10:ENST00000647408.1:ENST00000646370.2:ENST00000645609.1:ENST00000497492.1:ENST00000646680.1:ENST00000646156.1:ENST00000643438.1:ENST00000489867.2:ENST00000486051.5:ENST00000492343.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	17	66	2	1.57422	1.64902	1.72382	0.0106389	0.00679121	0.0861859	0.0744032
chr6	37171591	37171691	2855266	0	+	0.6	(0.57,1]	chr6	269926	1	SS5_PROX	SS5_PROX:INTRON	PIM1	ENSG00000137193.14	ENST00000373509.6	protein_coding	protein_coding	protein_coding	protein_coding	16	49	2	1.16356	1.649005	2.13445	0.032971	0.0241482	0.145248	0.12011
chr16	21442307	21442406	6460738	0	-	0.383838	(0.378,0.408]	chr16	623226	17	INTRON	INTRON	NPIPB3	ENSG00000169246.16	ENST00000545358.5:ENST00000543368.1:ENST00000544154.1	protein_coding	retained_intron	protein_coding	retained_intron:processed_transcript	20	156	2	1.2666	1.648975	2.03135	0.0339699	0.00181862	0.134665	0.0395489
chr1	32660950	32661050	65928	0	+	0.52	(0.515,0.57]	chr1	8422	30	INTRON	INTRON	RBBP4	ENSG00000162521.19	ENST00000414241.7:ENST00000527118.5:ENST00000373493.10:ENST00000401893.7:ENST00000524393.5:ENST00000492348.6:ENST00000526193.5:ENST00000373485.5:ENST00000477563.6:ENST00000458695.6:ENST00000445722.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	13	83	2	1.28214	1.648875	2.01561	0.0436578	0.00518674	0.148843	0.0654085
chr17	82910870	82910967	6695834	0	+	0.536082	(0.515,0.57]	chr17	655020	12	INTRON	INTRON	TBCD	ENSG00000141556.22	ENST00000682479.1:ENST00000682722.1:ENST00000684464.1:ENST00000684544.1:ENST00000681983.1:ENST00000684361.1:ENST00000683184.1:ENST00000683282.1:ENST00000684408.1:ENST00000355528.9:ENST00000683444.1:ENST00000684776.1:ENST00000683041.1:ENST00000684760.1:ENST00000684349.1:ENST00000682213.1:ENST00000539345.6:ENST00000684000.1:ENST00000684188.1:ENST00000684429.1:ENST00000682610.1:ENST00000683821.1:ENST00000682654.1:ENST00000576160.6:ENST00000571712.5:ENST00000576996.5:ENST00000574801.5:ENST00000683584.1:ENST00000682099.1:ENST00000684559.1:ENST00000571316.5:ENST00000576760.5:ENST00000572984.5:ENST00000683839.1:ENST00000574975.5:ENST00000572953.5:ENST00000571796.5:ENST00000682315.1:ENST00000574422.1:ENST00000576677.6:ENST00000571618.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	39	2	1.5060500000000001	1.648705	1.79136	0.0638444	0.0511812	0.177811	0.176696
chr8	23567583	23567680	3715487	0	+	0.505155	(0.476,0.515]	chr8	345233	9	EXON_MRNA	EXON_MRNA:INTRON	SLC25A37	ENSG00000147454.14	ENST00000519973.6:ENST00000290075.10:ENST00000417331.6:ENST00000518881.5:ENST00000520654.1:ENST00000523930.1:ENST00000523883.5:ENST00000522164.5:ENST00000521637.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	155	1113	2	1.31052	1.648545	1.98657	0.00470895	1.8828e-4	0.0631419	0.012549
chr1	42702172	42702268	84148	0	+	0.260417	[0,0.28]	chr1	11051	3	UTR3	UTR3:EXON_MRNA	YBX1	ENSG00000065978.19	ENST00000321358.12:ENST00000436427.1	protein_coding	protein_coding	protein_coding	protein_coding	39	407	2	1.16352	1.648505	2.13349	0.0290158	0.0018805200000000001	0.141144	0.0391134
chr19	809457	809554	6992230	0	+	0.494845	(0.476,0.515]	chr19	692271	3	INTRON	INTRON	PTBP1	ENSG00000011304.22	ENST00000635647.1:ENST00000627714.2:ENST00000676227.1:ENST00000677277.1:ENST00000349038.8:ENST00000586944.5:ENST00000356948.11:ENST00000394601.8:ENST00000679114.1:ENST00000350092.8:ENST00000621737.4:ENST00000585932.5:ENST00000585856.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	62	2	1.52615	1.64844	1.77073	0.0739267	0.0151174	0.190914	0.108513
chrX	111698350	111698450	7702190	0	+	0.29	(0.28,0.32]	chrX	788221	83	INTRON	INTRON	ALG13	ENSG00000101901.12	ENST00000487141.5:ENST00000394780.8:ENST00000251943.8:ENST00000610588.4:ENST00000621367.4:ENST00000622997.3:ENST00000624161.3:ENST00000636363.1:ENST00000624881.3:ENST00000495283.5:ENST00000486353.5:ENST00000623144.3:ENST00000470971.5:ENST00000623148.3:ENST00000471924.5:ENST00000436609.5:ENST00000470704.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	65	2	1.38068	1.6483949999999998	1.91611	0.0590236	0.0539102	0.189982	0.164153
chr1	19911345	19911445	41037	0	+	0.33	(0.32,0.35]	chr1	4832	37	UTR3	UTR3:EXON_MRNA	OTUD3	ENSG00000169914.6	ENST00000375120.4	protein_coding	protein_coding	protein_coding	protein_coding	18	162	2	1.40017	1.648345	1.89652	0.0314842	0.00320909	0.13151	0.0522604
chr10	125076605	125076704	4713495	0	-	0.555556	(0.515,0.57]	chr10	434897	371	INTRON	INTRON	CTBP2	ENSG00000175029.17	ENST00000337195.9:ENST00000411419.6:ENST00000494626.6:ENST00000531469.5:ENST00000460976.5:ENST00000476817.1:ENST00000530884.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	41	2	1.60221	1.64814	1.69407	0.0581855	0.0459452	0.188704	0.149888
chr9	89311751	89311851	4152965	0	+	0.51	(0.476,0.515]	chr9	378773	4	SS5_PROX	SS5_PROX:PRIMIRNA:INTRON	CKS2:MIR3153	ENSG00000123975.5:ENSG00000265112.1	ENST00000314355.7:ENST00000580744.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:primary_miRNA	12	96	2	1.36472	1.64806	1.9314	0.0467985	0.00643736	0.167716	0.0697513
chr16	47489021	47489120	6343579	0	+	0.424242	(0.408,0.44]	chr16	608849	247	INTRON	INTRON	PHKB	ENSG00000102893.17	ENST00000566037.6:ENST00000566044.5:ENST00000299167.12:ENST00000696809.1:ENST00000323584.10:ENST00000565424.2:ENST00000567402.5:ENST00000563376.5:ENST00000564873.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	67	2	1.4609	1.647955	1.83501	0.0340889	0.0323448	0.146815	0.133003
chr1	109215351	109215450	179606	0	+	0.40404	(0.378,0.408]	chr1	19612	3	INTRON	INTRON	SARS1	ENSG00000031698.13	ENST00000234677.7:ENST00000477544.5:ENST00000369923.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	60	2	1.53546	1.64789	1.76032	0.0721577	0.0265688	0.187433	0.134088
chr2	151444478	151444567	893567	0	+	0.460674	(0.44,0.476]	chr2	98964	4	INTRON	INTRON	RIF1	ENSG00000080345.18	ENST00000453091.6:ENST00000428287.6:ENST00000444746.7:ENST00000243326.9:ENST00000414861.6:ENST00000430328.6	protein_coding	protein_coding	protein_coding	protein_coding	9	70	2	1.47433	1.647695	1.82106	0.0595438	0.0124107	0.16883600000000001	0.0973643
chr22	20127052	20127127	7478694	0	+	0.306667	(0.28,0.32]	chr22	762808	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	RANBP1	ENSG00000099901.17	ENST00000435265.5:ENST00000430524.6:ENST00000402752.5:ENST00000331821.7:ENST00000448394.2:ENST00000486575.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	76	718	2	1.27609	1.6475549999999999	2.01902	0.0172088	3.40869e-4	0.104099	0.0164686
chr3	25747414	25747513	1642476	0	-	0.30303	(0.28,0.32]	chr3	168658	66	INTRON	INTRON	NGLY1	ENSG00000151092.18	ENST00000280700.10:ENST00000428257.5:ENST00000675217.1:ENST00000676225.1:ENST00000493324.5:ENST00000396649.7:ENST00000675178.1:ENST00000675680.1:ENST00000308710.9:ENST00000280699.13:ENST00000674841.1:ENST00000675234.1:ENST00000463611.2:ENST00000417874.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	17	168	2	1.22805	1.6474900000000001	2.06693	0.0577589	0.00201725	0.167723	0.0415797
chr1	112951578	112951678	524098	0	-	0.36	(0.35,0.378]	chr1	61694	157	INTRON	INTRON	SLC16A1	ENSG00000155380.13	ENST00000679803.1:ENST00000369626.8:ENST00000538576.5:ENST00000429288.2:ENST00000458229.6:ENST00000679846.1:ENST00000478835.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	53	2	1.58862	1.647345	1.70607	0.0615516	0.0482819	0.193423	0.153283
chr17	30736889	30736988	6589855	0	+	0.40404	(0.378,0.408]	chr17	640852	14	INTRON	INTRON	SUZ12P1	ENSG00000264538.7	ENST00000578070.5:ENST00000579526.5:ENST00000690405.1:ENST00000497969.6:ENST00000578195.6:ENST00000582557.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	17	135	2	1.59292	1.6473149999999999	1.70171	0.016495	0.00704266	0.102435	0.0754923
chr11	9282433	9282532	4909103	0	-	0.333333	(0.32,0.35]	chr11	460125	19	UTR3	UTR3:EXON_MRNA:INTRON	TMEM41B	ENSG00000166471.11	ENST00000524543.5:ENST00000528080.6:ENST00000299596.8:ENST00000611268.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	37	313	2	1.56852	1.6471399999999998	1.72576	0.00651479	0.00370072	0.0699952	0.0561162
chr1	244862752	244862840	673090	0	-	0.420455	(0.408,0.44]	chr1	79640	1	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	HNRNPU	ENSG00000153187.20	ENST00000649899.1:ENST00000640306.1:ENST00000444376.7:ENST00000640218.2:ENST00000440865.2:ENST00000638952.1:ENST00000366525.8:ENST00000283179.14:ENST00000638475.1:ENST00000476241.2:ENST00000640056.1:ENST00000640440.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	72	2	1.20916	1.6470099999999999	2.08486	0.0631681	0.0145898	0.197212	0.0981689
chr11	65505424	65505523	4806198	0	+	0.474747	(0.44,0.476]	chr11	446569	79	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MALAT1	ENSG00000251562.9	ENST00000619449.2:ENST00000534336.1:ENST00000610851.1:ENST00000618227.1:ENST00000617489.1:ENST00000616691.1	lncRNA	lncRNA	lncRNA	lncRNA	704	4953	2	1.47722	1.646825	1.81643	0.0012134	3.33884e-4	0.0322432	0.0169431
chr17	32354308	32354408	6598022	0	+	0.41	(0.408,0.44]	chr17	641893	20	INTRON	INTRON	ZNF207	ENSG00000010244.19	ENST00000321233.10:ENST00000394673.6:ENST00000394670.9:ENST00000579634.5:ENST00000580759.5:ENST00000342555.10:ENST00000577908.5:ENST00000394679.9:ENST00000582165.1:ENST00000577324.1:ENST00000578918.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	14	108	2	1.4685	1.64679	1.82508	0.029918	0.0063277	0.129138	0.0722266
chr22	16806250	16806349	7546463	0	-	0.262626	[0,0.28]	chr22	771321	59	INTRON	INTRON	XKR3	ENSG00000172967.8	ENST00000331428.5:ENST00000684488.1	protein_coding	protein_coding	protein_coding	protein_coding	20	197	2	1.07424	1.6466100000000001	2.21898	0.0574002	0.00526342	0.187319	0.0633874
chr18	669173	669270	6855549	0	+	0.494845	(0.476,0.515]	chr18	679609	1	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	TYMS	ENSG00000176890.16	ENST00000323274.15:ENST00000579128.1:ENST00000323224.7:ENST00000323250.9:ENST00000581920.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	10	79	2	1.63962	1.64642	1.65322	0.0346854	0.0190363	0.148144	0.108861
chr7	129486422	129486520	3412100	0	+	0.326531	(0.32,0.35]	chr7	319005	7	UTR3	UTR3:EXON_MRNA	STRIP2	ENSG00000128578.10	ENST00000249344.7	protein_coding	protein_coding	protein_coding	protein_coding	9	82	2	1.61591	1.646395	1.67688	0.0361676	0.0277247	0.138959	0.137011
chr1	52890902	52891000	105399	0	+	0.489796	(0.476,0.515]	chr1	13786	35	INTRON	INTRON	ZYG11A	ENSG00000203995.10	ENST00000371532.5:ENST00000612017.4:ENST00000371528.2	protein_coding	protein_coding	protein_coding	protein_coding	9	68	2	1.37743	1.64634	1.91525	0.0477443	0.0232571	0.153019	0.127416
chr5	79686462	79686561	2399488	0	+	0.323232	(0.32,0.35]	chr5	231767	13	UTR3	UTR3:EXON_MRNA	TENT2	ENSG00000164329.14	ENST00000423041.6:ENST00000453514.6:ENST00000296783.7	protein_coding	protein_coding	protein_coding	protein_coding	12	108	2	1.44797	1.64629	1.84461	0.0304475	0.0150305	0.143385	0.0994339
chr6	4054449	4054547	2790041	0	+	0.326531	(0.32,0.35]	chr6	263541	12	INTRON	INTRON	PRPF4B	ENSG00000112739.17	ENST00000480058.5:ENST00000337659.11:ENST00000481109.5:ENST00000463634.6:ENST00000466185.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	18	158	2	1.43399	1.64607	1.85815	0.0179019	0.00827706	0.114115	0.0774402
chr1	43848266	43848365	87504	0	+	0.393939	(0.378,0.408]	chr1	11707	56	INTRON	INTRON	ST3GAL3	ENSG00000126091.21	ENST00000646096.1:ENST00000643597.1:ENST00000643886.1:ENST00000372372.7:ENST00000545417.5:ENST00000330208.6:ENST00000335430.10:ENST00000361400.9:ENST00000347631.8:ENST00000642331.1:ENST00000647237.1:ENST00000643252.1:ENST00000372374.7:ENST00000361392.9:ENST00000533997.6:ENST00000353126.8:ENST00000645640.1:ENST00000642934.1:ENST00000643283.1:ENST00000351035.8:ENST00000642949.1:ENST00000489897.6:ENST00000646971.1:ENST00000645142.1:ENST00000645705.1:ENST00000530154.5:ENST00000646027.1:ENST00000646069.1:ENST00000642504.1:ENST00000647148.1:ENST00000262915.8:ENST00000647482.1:ENST00000645394.1:ENST00000647128.1:ENST00000361746.9:ENST00000645034.1:ENST00000645165.1:ENST00000647134.1:ENST00000644195.1:ENST00000642194.1:ENST00000372368.7:ENST00000646686.1:ENST00000372366.6:ENST00000361812.9:ENST00000469715.6:ENST00000372369.5:ENST00000372367.5:ENST00000372365.5:ENST00000528371.5:ENST00000533212.5:ENST00000530581.5:ENST00000531816.1:ENST00000531993.6:ENST00000490541.6:ENST00000372362.6:ENST00000531451.5:ENST00000645117.1:ENST00000533933.6:ENST00000332628.11:ENST00000643813.1:ENST00000644922.1:ENST00000644287.1:ENST00000647503.1:ENST00000461375.2:ENST00000642780.1:ENST00000644645.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	10	80	2	1.52219	1.64601	1.76983	0.0531838	0.0109303	0.162538	0.0924702
chr5	146481597	146481696	2515861	0	+	0.30303	(0.28,0.32]	chr5	240359	5	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	TCERG1	ENSG00000113649.13	ENST00000296702.9:ENST00000679501.2:ENST00000394421.7:ENST00000549332.1:ENST00000515203.5:ENST00000506524.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	15	148	2	1.63613	1.6458949999999999	1.65566	0.0206743	0.0123101	0.110999	0.0971761
chr16	57183071	57183170	6493079	0	-	0.414141	(0.408,0.44]	chr16	627985	14	INTRON	INTRON	PSME3IP1	ENSG00000172775.17	ENST00000309137.13:ENST00000566077.5:ENST00000567439.5:ENST00000564108.5:ENST00000562324.5:ENST00000567044.5:ENST00000565458.5:ENST00000562406.5:ENST00000566584.5:ENST00000568671.5:ENST00000565760.5:ENST00000566481.5:ENST00000570184.1:ENST00000566681.1:ENST00000565353.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	55	2	1.58763	1.64586	1.70409	0.0639217	0.028108	0.177824	0.137011
chr17	46565577	46565677	6786591	0	-	0.48	(0.476,0.515]	chr17	669366	64	INTRON	INTRON	ARL17A	ENSG00000185829.18	ENST00000445552.6:ENST00000622488.6:ENST00000329240.10:ENST00000573185.5:ENST00000570550.5:ENST00000336125.6	protein_coding	protein_coding	protein_coding	protein_coding	9	66	2	1.40573	1.645775	1.88582	0.0410362	0.0273268	0.161534	0.123904
chr21	39194030	39194129	7464299	0	-	0.343434	(0.32,0.35]	chr21	760356	68	UTR3	UTR3:EXON_MRNA:INTRON	BRWD1	ENSG00000185658.14	ENST00000333229.6:ENST00000342449.8:ENST00000446924.5:ENST00000380800.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	109	2	1.3612	1.64571	1.93022	0.0548037	0.00608869	0.165463	0.0705469
chr6	143443762	143443861	3242300	0	-	0.383838	(0.378,0.408]	chr6	301155	19	INTRON	INTRON	ADAT2	ENSG00000189007.16	ENST00000237283.9	protein_coding	protein_coding	protein_coding	protein_coding	35	275	2	1.57434	1.6456	1.71686	0.00414339	0.00380711	0.0589266	0.0542786
chr7	119716756	119716855	3628505	0	-	0.343434	(0.32,0.35]	chr7	337319	114	INTRON	INTRON	LINC02476	ENSG00000225546.6	ENST00000660268.1:ENST00000431071.5	lncRNA	lncRNA	lncRNA	lncRNA	14	126	2	1.41097	1.6455899999999999	1.88021	0.0344828	0.00751788	0.136331	0.0773151
chr4	145128158	145128255	2064173	0	+	0.319588	(0.28,0.32]	chr4	204274	7	UTR3	UTR3:EXON_MRNA	ABCE1	ENSG00000164163.11	ENST00000296577.9	protein_coding	protein_coding	protein_coding	protein_coding	9	93	2	1.60333	1.6455449999999998	1.68776	0.0413158	0.0272985	0.161534	0.123904
chr21	39347202	39347292	7465686	0	-	0.277778	[0,0.28]	chr21	760602	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	HMGN1	ENSG00000205581.11	ENST00000492280.5:ENST00000431390.5:ENST00000486741.5:ENST00000380749.10:ENST00000288344.14:ENST00000652622.1:ENST00000436324.5:ENST00000380748.5:ENST00000419378.5:ENST00000489072.5:ENST00000482192.5:ENST00000380747.5:ENST00000485550.5:ENST00000490032.5:ENST00000443046.5:ENST00000464078.5:ENST00000491183.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	23	258	2	1.53372	1.64551	1.7573	0.023	0.00473138	0.118056	0.063382
chr4	82835959	82836058	2179519	0	-	0.444444	(0.44,0.476]	chr4	214267	46	INTRON	INTRON	SEC31A	ENSG00000138674.17	ENST00000395310.7:ENST00000513858.5:ENST00000348405.8:ENST00000503937.5:ENST00000448323.5:ENST00000311785.11:ENST00000509142.5:ENST00000443462.6:ENST00000500777.6:ENST00000505472.5:ENST00000355196.6:ENST00000508502.5:ENST00000264405.9:ENST00000505984.5:ENST00000511338.1:ENST00000515749.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	20	149	2	1.63361	1.64532	1.65703	0.0122328	0.00584725	0.0910127	0.0689807
chrX	73845530	73845630	7837979	0	-	0.42	(0.408,0.44]	chrX	799611	82	EXON_LNCRNA	EXON_LNCRNA:INTRON	XIST	ENSG00000229807.13	ENST00000650627.1:ENST00000434839.3:ENST00000429829.6:ENST00000650366.1:ENST00000650186.1:ENST00000635841.2:ENST00000650637.1:ENST00000648970.1	lncRNA	lncRNA	lncRNA	lncRNA	23	174	2	1.58342	1.6453	1.70718	0.0121219	0.00356342	0.090965	0.0548435
chr7	75229619	75229718	3557731	0	-	0.434343	(0.408,0.44]	chr7	331396	120	INTRON	INTRON	GTF2IP1	ENSG00000277053.4	ENST00000622829.4:ENST00000616377.4	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	7	52	2	1.54273	1.6452399999999998	1.74775	0.0735403	0.0337312	0.190238	0.146709
chr3	5123982	5124082	1353590	0	+	0.53	(0.515,0.57]	chr3	142354	10	INTRON	INTRON	ARL8B	ENSG00000134108.14	ENST00000429403.5:ENST00000256496.8:ENST00000455168.5:ENST00000444332.1:ENST00000419534.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	52	2	1.59629	1.6451799999999999	1.69407	0.0459452	0.0274344	0.149888	0.136554
chr6	43781863	43781955	2872184	0	+	0.445652	(0.44,0.476]	chr6	272364	12	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	VEGFA	ENSG00000112715.26	ENST00000672860.3:ENST00000372067.8:ENST00000425836.8:ENST00000372064.9:ENST00000482630.7:ENST00000372055.9:ENST00000413642.8:ENST00000324450.11:ENST00000417285.7:ENST00000372077.8:ENST00000519767.5:ENST00000520948.5:ENST00000523950.5:ENST00000523873.5:ENST00000518824.5:ENST00000457104.6:ENST00000518689.5:ENST00000523125.5:ENST00000230480.10:ENST00000480614.1:ENST00000520265.1:ENST00000497139.5:ENST00000493786.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	16	98	2	1.32431	1.645165	1.96602	0.0426807	0.0190152	0.148082	0.11884
chr7	127935924	127936024	3405259	0	+	0.53	(0.515,0.57]	chr7	318173	62	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000486037.1:ENST00000484767.5:ENST00000492840.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	75	2	1.51235	1.6451500000000001	1.77795	0.0222234	0.0176977	0.116128	0.11319
chr17	57993363	57993462	6799910	0	-	0.444444	(0.44,0.476]	chr17	671422	37	EXON_LNCRNA	EXON_LNCRNA:INTRON	ENSG00000266086:ENSG00000264112	ENSG00000266086.3:ENSG00000264112.1	ENST00000578794.2:ENST00000665125.1:ENST00000577267.1:ENST00000585065.1	protein_coding	nonsense_mediated_decay	protein_coding:lncRNA	nonsense_mediated_decay:lncRNA:processed_transcript	36	251	2	1.38628	1.644965	1.90365	0.00761058	0.00244122	0.077588	0.0445752
chr10	74065086	74065185	4455174	0	+	0.414141	(0.408,0.44]	chr10	411401	13	INTRON	INTRON	VCL	ENSG00000035403.18	ENST00000623461.3:ENST00000372755.7:ENST00000624354.3:ENST00000211998.10:ENST00000478896.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	75	2	1.43792	1.64467	1.85142	0.062843	0.0127811	0.196433	0.0926667
chr12	68615850	68615950	5161254	0	+	0.34	(0.32,0.35]	chr12	488573	44	INTRON	INTRON	RAP1B	ENSG00000127314.18	ENST00000460800.5:ENST00000393436.9:ENST00000250559.14:ENST00000425247.6:ENST00000501412.2:ENST00000450214.6:ENST00000463493.5:ENST00000537460.5:ENST00000341355.9:ENST00000538283.5:ENST00000541167.5:ENST00000422358.6:ENST00000489473.6:ENST00000545270.5:ENST00000538980.5:ENST00000543393.5:ENST00000542018.5:ENST00000540209.5:ENST00000378985.7:ENST00000453560.6:ENST00000534899.5:ENST00000542145.5:ENST00000539091.5:ENST00000535492.5:ENST00000540781.5:ENST00000485252.6:ENST00000538877.5:ENST00000541386.5:ENST00000543697.5:ENST00000545720.6:ENST00000541216.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	9	82	2	1.37114	1.64467	1.9182	0.0648061	0.0141462	0.179337	0.103512
chr17	63799279	63799379	6661215	0	+	0.39	(0.378,0.408]	chr17	649966	4	SS3_PROX	SS3_PROX:INTRON	DDX42	ENSG00000198231.14	ENST00000578681.5:ENST00000583590.5:ENST00000389924.7:ENST00000359353.9:ENST00000578137.5:ENST00000584261.5:ENST00000577940.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	86	2	1.64169	1.6446550000000002	1.64762	0.0377255	0.0136375	0.14078	0.101785
chr2	241324524	241324624	1053700	0	+	0.5	(0.476,0.515]	chr2	112212	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	SEPTIN2	ENSG00000168385.18	ENST00000391973.6:ENST00000428282.5:ENST00000492978.5:ENST00000360051.7:ENST00000407017.5:ENST00000445030.5:ENST00000428524.5:ENST00000469434.5:ENST00000616972.4:ENST00000495463.5:ENST00000482304.5:ENST00000475474.5:ENST00000401990.5:ENST00000469175.5:ENST00000407971.5:ENST00000461048.5:ENST00000457335.5:ENST00000436795.5:ENST00000494824.5:ENST00000411484.5:ENST00000462147.5:ENST00000434955.5:ENST00000466211.5:ENST00000391971.7:ENST00000402092.6:ENST00000484740.1:ENST00000473479.5:ENST00000464128.5:ENST00000441533.5:ENST00000467971.5:ENST00000425899.5:ENST00000443492.5:ENST00000437066.5:ENST00000429791.5:ENST00000420786.5:ENST00000475823.5:ENST00000449239.5:ENST00000366210.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	12	87	2	1.4273	1.64456	1.86182	0.0258675	0.0178986	0.133676	0.106365
chr19	57861035	57861135	7106148	0	+	0.49	(0.476,0.515]	chr19	713245	10	UTR3	UTR3:EXON_MRNA	ZNF587	ENSG00000198466.12	ENST00000339656.8:ENST00000419854.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	15	108	2	1.10022	1.6444800000000002	2.18874	0.066433	0.00255859	0.182434	0.0466761
chr8	140996000	140996099	4080026	0	-	0.494949	(0.476,0.515]	chr8	370590	115	INTRON	INTRON	PTK2	ENSG00000169398.20	ENST00000696786.1:ENST00000522684.5:ENST00000395218.3:ENST00000521059.5:ENST00000519993.5:ENST00000340930.7:ENST00000524357.5:ENST00000521791.5:ENST00000523067.5:ENST00000520828.5:ENST00000519881.5:ENST00000520892.5:ENST00000517453.5:ENST00000520045.5:ENST00000521332.5:ENST00000524040.5:ENST00000523679.1:ENST00000524257.5:ENST00000523797.1:ENST00000519635.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	56	2	1.61586	1.644345	1.67283	0.0567093	0.0332283	0.185107	0.134145
chr1	201959059	201959158	292377	0	+	0.373737	(0.35,0.378]	chr1	33667	11	INTRON	INTRON	TIMM17A	ENSG00000134375.11	ENST00000367287.5:ENST00000478378.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	95	2	1.5543	1.6441	1.7339	0.0260366	0.0236849	0.133676	0.118716
chr7	101819479	101819578	3366383	0	+	0.393939	(0.378,0.408]	chr7	315215	1	INTRON	INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000497815.5:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000607092.1:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000558469.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	49	2	1.39189	1.64405	1.89621	0.0751636	0.0488044	0.193731	0.173377
chr12	121327723	121327822	5436928	0	-	0.373737	(0.35,0.378]	chr12	519876	6	EXON_MRNA	EXON_MRNA:SS3_PROX:SS5_PROX:INTRON	ANAPC5	ENSG00000089053.13	ENST00000261819.8:ENST00000535641.5:ENST00000541887.5:ENST00000534976.5:ENST00000441917.6:ENST00000539079.5:ENST00000544314.5:ENST00000535482.1:ENST00000545218.5:ENST00000535472.5:ENST00000538334.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	14	113	2	1.51432	1.6440450000000002	1.77377	0.0180971	0.016212	0.109464	0.107237
chr6	15263854	15263954	2823124	0	+	0.52	(0.515,0.57]	chr6	265190	145	INTRON	INTRON	JARID2	ENSG00000008083.14	ENST00000341776.7:ENST00000397311.4	protein_coding	protein_coding	protein_coding	protein_coding	19	120	2	1.37688	1.643895	1.91091	0.0189055	0.00389995	0.108861	0.0569466
chr3	197612022	197612122	1903872	0	-	0.49	(0.476,0.515]	chr3	190724	4	SS3_PROX	SS3_PROX:INTRON	SDHAP4	ENSG00000214135.9	ENST00000453454.5:ENST00000685600.1:ENST00000688268.1:ENST00000689716.1:ENST00000689038.1:ENST00000414207.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	10	77	2	1.59365	1.6438899999999999	1.69413	0.0306944	0.0200655	0.13151	0.121043
chr1	110962228	110962327	522220	0	-	0.353535	(0.35,0.378]	chr1	61360	91	INTRON	INTRON	LRIF1	ENSG00000121931.16	ENST00000369763.5:ENST00000485275.2	protein_coding	protein_coding	protein_coding	protein_coding	14	117	2	1.49516	1.64386	1.79256	0.0351684	0.00602609	0.137535	0.0700813
chr7	102663469	102663568	3589155	0	-	0.40404	(0.378,0.408]	chr7	335089	208	INTRON	INTRON	ENSG00000267645	ENSG00000267645.5	ENST00000476151.5	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	9	73	2	1.48285	1.64384	1.80483	0.044825	0.0201276	0.149888	0.121243
chr2	235621115	235621215	1042608	0	+	0.53	(0.515,0.57]	chr2	111222	962	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1:ENST00000402604.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	45	2	1.33814	1.643795	1.94945	0.063703	0.0414068	0.177689	0.161557
chr1	35376488	35376587	69375	0	+	0.40404	(0.378,0.408]	chr1	8759	55	INTRON	INTRON	ZMYM4	ENSG00000146463.12	ENST00000314607.11:ENST00000457946.1	protein_coding	protein_coding	protein_coding	protein_coding	10	79	2	1.53546	1.64375	1.75204	0.0268575	0.0265688	0.134088	0.123442
chr11	86020782	86020880	5014353	0	-	0.295918	(0.28,0.32]	chr11	472995	55	INTRON	INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000630913.2:ENST00000528398.5:ENST00000356360.9:ENST00000534412.5:ENST00000531771.5:ENST00000531558.1:ENST00000531930.5:ENST00000532041.5:ENST00000525162.5:ENST00000528256.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	77	2	1.23288	1.6437300000000001	2.05458	0.0626355	0.0381508	0.1959	0.141764
chr2	27583916	27584016	717942	0	+	0.41	(0.408,0.44]	chr2	83351	2	SS5_PROX	SS5_PROX:INTRON	ZNF512	ENSG00000243943.10	ENST00000413371.6:ENST00000416005.6:ENST00000556601.5:ENST00000379717.5:ENST00000355467.6:ENST00000494548.1:ENST00000461705.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	14	98	2	1.24825	1.643605	2.03896	0.0375059	0.00968464	0.156054	0.0828348
chr7	121209222	121209322	3395861	0	+	0.36	(0.35,0.378]	chr7	317781	592	INTRON	INTRON	CPED1	ENSG00000106034.18	ENST00000310396.10:ENST00000450913.6:ENST00000423795.5:ENST00000466055.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	107	2	1.36055	1.6435	1.92645	0.0337743	0.0104433	0.146709	0.0855102
chr10	6167107	6167207	4386216	0	+	0.55	(0.515,0.57]	chr10	404834	27	INTRON	INTRON	PFKFB3	ENSG00000170525.21	ENST00000379789.8:ENST00000536985.6:ENST00000639949.1	protein_coding	protein_coding	protein_coding	protein_coding	11	72	2	1.50809	1.643485	1.77888	0.0294196	0.0139834	0.128055	0.10247
chr8	120471422	120471520	3849186	0	+	0.479592	(0.476,0.515]	chr8	354558	6	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	MTBP	ENSG00000172167.8	ENST00000305949.6:ENST00000522449.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	63	2	1.53534	1.64338	1.75142	0.0476737	0.0259024	0.170116	0.121522
chr2	27351032	27351132	1086821	0	-	0.44	(0.408,0.44]	chr2	116361	4	SS3_PROX	SS3_PROX:INTRON	GTF3C2	ENSG00000115207.15	ENST00000359541.6:ENST00000264720.8:ENST00000457748.1:ENST00000423998.1	protein_coding	protein_coding	protein_coding	protein_coding	8	61	2	1.45162	1.6433149999999999	1.83501	0.0451203	0.0323448	0.163518	0.133003
chr18	9918116	9918215	6873382	0	+	0.383838	(0.378,0.408]	chr18	680866	19	INTRON	INTRON	VAPA	ENSG00000101558.14	ENST00000400000.7:ENST00000577901.5:ENST00000340541.4:ENST00000585042.5:ENST00000578314.1:ENST00000584796.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	17	131	2	1.62294	1.64307	1.6632	0.0222846	0.00599073	0.116433	0.0700606
chr11	66642656	66642753	4811070	0	+	0.381443	(0.378,0.408]	chr11	447893	16	INTRON	INTRON	RBM14-RBM4:RBM4	ENSG00000248643.5:ENSG00000173933.21	ENST00000412278.2:ENST00000421355.1:ENST00000500635.2:ENST00000396053.9:ENST00000408993.6:ENST00000578778.5:ENST00000398692.8:ENST00000310092.12:ENST00000510173.6:ENST00000528039.5:ENST00000506523.6:ENST00000530235.1:ENST00000409406.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	13	103	2	1.3966	1.64294	1.88928	0.0332291	0.00958693	0.134145	0.0866052
chr7	111329883	111329983	3621781	0	-	0.34	(0.32,0.35]	chr7	337093	3660	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	56	2	1.55682	1.6429	1.72898	0.0724487	0.0425433	0.188101	0.161951
chr6	135207725	135207824	2962438	0	+	0.434343	(0.408,0.44]	chr6	278661	39	INTRON	INTRON	MYB	ENSG00000118513.20	ENST00000341911.10:ENST00000442647.7:ENST00000316528.12:ENST00000616088.4:ENST00000339290.9:ENST00000367812.6:ENST00000463282.6:ENST00000525477.5:ENST00000533837.5:ENST00000367814.8:ENST00000525369.5:ENST00000438901.6:ENST00000525514.5:ENST00000526320.5:ENST00000526889.5:ENST00000529586.5:ENST00000531519.5:ENST00000533808.5:ENST00000528343.5:ENST00000524588.5:ENST00000525002.5:ENST00000525940.5:ENST00000526187.5:ENST00000526565.5:ENST00000528015.5:ENST00000528140.5:ENST00000528345.5:ENST00000528774.5:ENST00000529262.5:ENST00000531634.5:ENST00000531737.5:ENST00000533384.5:ENST00000533624.5:ENST00000534044.5:ENST00000534121.5:ENST00000531845.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	73	2	1.55035	1.6428349999999998	1.73532	0.0455214	0.0194186	0.164236	0.109149
chr19	28494450	28494550	7166039	0	-	0.44	(0.408,0.44]	chr19	724189	262	INTRON	INTRON	ENSG00000283403:ENSG00000267243	ENSG00000283403.1:ENSG00000267243.6	ENST00000592347.5:ENST00000593065.5	lncRNA	lncRNA	lncRNA	lncRNA	17	125	2	1.12195	1.64257	2.16319	0.0581997	0.00180756	0.167723	0.0393572
chr16	11897085	11897185	6446216	0	-	0.33	(0.32,0.35]	chr16	621115	3	SS3_PROX	SS3_PROX:INTRON	GSPT1	ENSG00000103342.13	ENST00000434724.7:ENST00000439887.6:ENST00000565267.5:ENST00000563468.5:ENST00000420576.6:ENST00000568849.5:ENST00000562169.1	protein_coding	protein_coding	protein_coding	protein_coding	9	78	2	1.47118	1.6425299999999998	1.81388	0.0371014	0.0345598	0.148144	0.139201
chr7	158907779	158907878	3456654	0	+	0.474747	(0.44,0.476]	chr7	323196	13	INTRON	INTRON	DYNC2I1	ENSG00000126870.16	ENST00000407559.8:ENST00000444851.5:ENST00000467220.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	19	139	2	1.40129	1.6425	1.88371	0.0166154	0.00600541	0.110511	0.0674604
chr15	55275593	55275692	6180764	0	-	0.393939	(0.378,0.408]	chr15	589167	48	INTRON	INTRON	RAB27A	ENSG00000069974.16	ENST00000336787.6:ENST00000563262.5:ENST00000567639.1:ENST00000565776.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	65	2	1.43665	1.64248	1.84831	0.0669652	0.0172621	0.183051	0.111749
chr22	21822340	21822439	7560933	0	-	0.50505	(0.476,0.515]	chr22	773388	141	INTRON	INTRON	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	13	99	2	1.55023	1.642395	1.73456	0.019797	0.0140928	0.120593	0.0959618
chr10	110122792	110122882	4519558	0	+	0.433333	(0.408,0.44]	chr10	416837	1	INTRON	INTRON	ADD3	ENSG00000148700.15	ENST00000360162.7:ENST00000277900.12:ENST00000356080.9:ENST00000486014.1:ENST00000488837.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	85	2	1.29079	1.6423800000000002	1.99397	0.0625053	0.00610802	0.175709	0.0706941
chr5	32148974	32149074	2597262	0	-	0.35	(0.32,0.35]	chr5	246744	47	INTRON	INTRON	GOLPH3	ENSG00000113384.14	ENST00000265070.7:ENST00000503610.5:ENST00000512668.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	64	2	1.59364	1.642355	1.69107	0.0517392	0.0413426	0.161557	0.159306
chr17	32868416	32868515	6757029	0	-	0.414141	(0.408,0.44]	chr17	664079	55	INTRON	INTRON	MYO1D	ENSG00000176658.17	ENST00000318217.10:ENST00000579584.5:ENST00000583621.1	protein_coding	protein_coding	protein_coding	protein_coding	7	55	2	1.53263	1.642265	1.7519	0.0733439	0.0239555	0.190051	0.129259
chr8	26411284	26411381	3717222	0	+	0.278351	[0,0.28]	chr8	345493	10	UTR3	UTR3:EXON_MRNA:INTRON	BNIP3L	ENSG00000104765.16	ENST00000380629.7:ENST00000523949.5	protein_coding	protein_coding	protein_coding	protein_coding	33	334	2	1.36224	1.64222	1.9222	0.0141423	0.00647285	0.103512	0.0699952
chr16	74587985	74588085	6525141	0	-	0.34	(0.32,0.35]	chr16	631842	248	INTRON	INTRON	GLG1	ENSG00000090863.12	ENST00000205061.9:ENST00000422840.7:ENST00000447066.6:ENST00000562090.5:ENST00000567951.5:ENST00000627032.2:ENST00000565260.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	53	2	1.45026	1.64221	1.83416	0.0631198	0.0622478	0.194723	0.176946
chr18	59330596	59330695	6980744	0	-	0.393939	(0.378,0.408]	chr18	690717	29	UTR3	UTR3:EXON_MRNA	LMAN1	ENSG00000074695.6	ENST00000251047.6	protein_coding	protein_coding	protein_coding	protein_coding	15	113	2	1.23643	1.6420299999999999	2.04763	0.039501	0.00619436	0.161534	0.0678171
chr12	760902	761002	5056260	0	+	0.42	(0.408,0.44]	chr12	477423	62	INTRON	INTRON	WNK1	ENSG00000060237.19	ENST00000315939.11:ENST00000340908.9:ENST00000535572.5:ENST00000537687.5:ENST00000530271.6:ENST00000447667.2	protein_coding	protein_coding	protein_coding	protein_coding	7	55	2	1.49523	1.64202	1.78881	0.0534846	0.0370259	0.180041	0.139194
chr17	63749350	63749450	6811724	0	-	0.42	(0.408,0.44]	chr17	673135	20	INTRON	INTRON	CCDC47	ENSG00000108588.15	ENST00000225726.10:ENST00000403162.7	protein_coding	protein_coding	protein_coding	protein_coding	7	55	2	1.49523	1.64202	1.78881	0.0534846	0.0370259	0.180041	0.139194
chr12	56643004	56643091	5335782	0	-	0.264368	[0,0.28]	chr12	510128	3	EXON_LNCRNA	EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ATP5F1B	ENSG00000110955.9	ENST00000262030.8:ENST00000548474.2:ENST00000547808.5:ENST00000547250.5:ENST00000551020.5:ENST00000550162.1:ENST00000552959.5:ENST00000551570.5:ENST00000553007.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	21	244	2	1.14142	1.641995	2.14257	0.0749198	9.84943e-4	0.193187	0.0288488
chr3	9395085	9395185	1611697	0	-	0.42	(0.408,0.44]	chr3	166266	12	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	THUMPD3-AS1	ENSG00000206573.10	ENST00000468186.5:ENST00000661342.1:ENST00000519043.5:ENST00000657509.1:ENST00000685076.1:ENST00000687342.1:ENST00000685952.1:ENST00000521609.5:ENST00000520629.5:ENST00000654392.1:ENST00000522525.6:ENST00000664441.2:ENST00000469846.3:ENST00000481221.7:ENST00000661714.1:ENST00000665983.1:ENST00000660363.1:ENST00000667458.1:ENST00000520447.1:ENST00000524210.2:ENST00000664273.1:ENST00000521267.5:ENST00000467069.6:ENST00000520396.1:ENST00000494680.6:ENST00000518437.3:ENST00000689821.1:ENST00000522221.2:ENST00000489616.1:ENST00000521708.1:ENST00000480904.2:ENST00000498199.1	lncRNA	lncRNA	lncRNA	lncRNA	19	145	2	1.31946	1.64199	1.96452	0.0329343	0.00191653	0.133816	0.0405014
chr12	122593510	122593606	5241297	0	+	0.5	(0.476,0.515]	chr12	497803	2	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	KNTC1	ENSG00000184445.12	ENST00000450485.6:ENST00000333479.12:ENST00000535186.1:ENST00000423927.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	16	125	2	1.20172	1.641905	2.08209	0.0495708	0.00240759	0.174681	0.0441686
chr3	196486998	196487098	1899853	0	-	0.42	(0.408,0.44]	chr3	190249	2	SS5_PROX	SS5_PROX:INTRON	RNF168	ENSG00000163961.4	ENST00000318037.3:ENST00000437070.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	14	110	2	1.35739	1.64189	1.92639	0.063317	0.00233196	0.177047	0.0442989
chr10	28557037	28557137	4414044	0	+	0.28	[0,0.28]	chr10	407148	186	INTRON	INTRON	WAC	ENSG00000095787.24	ENST00000680735.1:ENST00000375664.8:ENST00000428935.6:ENST00000651598.1:ENST00000628285.3:ENST00000681112.1:ENST00000679570.1:ENST00000375646.5:ENST00000354911.9:ENST00000347934.8:ENST00000420266.6:ENST00000651885.1:ENST00000651441.1:ENST00000679398.1:ENST00000424454.5:ENST00000442148.6:ENST00000448193.5:ENST00000414108.6:ENST00000679428.1:ENST00000439676.5:ENST00000345541.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	75	2	1.47169	1.641845	1.812	0.0729149	0.0479607	0.189235	0.171039
chr12	22662404	22662504	5095124	0	+	0.5	(0.476,0.515]	chr12	481256	8	INTRON	INTRON	ETNK1	ENSG00000139163.16	ENST00000671733.1:ENST00000266517.9:ENST00000538218.2:ENST00000673406.1:ENST00000673188.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	19	143	2	1.3727	1.641785	1.91087	0.0265708	0.00255225	0.123001	0.0466386
chr9	135950891	135950990	4372464	0	-	0.484848	(0.476,0.515]	chr9	402541	26	INTRON	INTRON	UBAC1	ENSG00000130560.9	ENST00000371756.4:ENST00000478485.1:ENST00000486258.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	27	203	2	1.39881	1.641725	1.88464	0.017861	0.00122813	0.106181	0.0325799
chr1	213243158	213243257	312633	0	+	0.444444	(0.44,0.476]	chr1	35979	1	INTRON	INTRON	RPS6KC1	ENSG00000136643.12	ENST00000615329.4:ENST00000543354.5:ENST00000614059.4:ENST00000543470.5:ENST00000366960.8:ENST00000366959.4:ENST00000490299.5:ENST00000491616.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	66	2	1.33609	1.64166	1.94723	0.0510862	0.0227424	0.176696	0.117618
chr1	150622573	150622663	551310	0	-	0.411111	(0.408,0.44]	chr1	64777	6	UTR3	UTR3:EXON_MRNA:INTRON	ENSA	ENSG00000143420.19	ENST00000369016.8:ENST00000369014.10:ENST00000361532.9:ENST00000361631.9	protein_coding	protein_coding	protein_coding	protein_coding	6	48	2	1.58763	1.641645	1.69566	0.0639217	0.0453922	0.177824	0.164236
chr6	12064812	12064912	2814754	0	+	0.42	(0.408,0.44]	chr6	264800	257	INTRON	INTRON	HIVEP1	ENSG00000095951.17	ENST00000491710.5:ENST00000487103.5:ENST00000379388.7:ENST00000627968.2:ENST00000541134.5:ENST00000442081.6:ENST00000478545.1	protein_coding	protein_coding	protein_coding	protein_coding	6	48	2	1.58763	1.641645	1.69566	0.0639217	0.0453922	0.177824	0.164236
chr4	1881117	1881217	1910667	0	+	0.54	(0.515,0.57]	chr4	191707	92	INTRON	INTRON	NSD2	ENSG00000109685.19	ENST00000508803.6:ENST00000507820.5:ENST00000508355.5:ENST00000514045.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	59	2	1.63907	1.64161	1.64415	0.0350277	0.0231656	0.137535	0.127036
chr16	85562357	85562457	6415455	0	+	0.46	(0.44,0.476]	chr16	615470	56	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	12	92	2	1.53934	1.641595	1.74385	0.0286379	0.0119796	0.126977	0.0962115
chr19	55030354	55030454	7100462	0	+	0.56	(0.515,0.57]	chr19	712216	23	INTRON	INTRON	GP6-AS1	ENSG00000267265.6	ENST00000593060.5:ENST00000586845.1:ENST00000586961.1	lncRNA	lncRNA	lncRNA	lncRNA	16	101	2	1.23536	1.641505	2.04765	0.0377903	0.00329866	0.156782	0.0511863
chr7	121142341	121142441	3395191	0	+	0.36	(0.35,0.378]	chr7	317776	2	SS5_PROX	SS5_PROX:INTRON	CPED1	ENSG00000106034.18	ENST00000310396.10:ENST00000450913.6:ENST00000423795.5	protein_coding	protein_coding	protein_coding	protein_coding	11	90	2	1.60373	1.6414300000000002	1.67913	0.0345494	0.016652900000000002	0.13657	0.110511
chr17	46089479	46089578	6783828	0	-	0.40404	(0.378,0.408]	chr17	669203	4	INTRON	INTRON	KANSL1	ENSG00000120071.15	ENST00000574590.6:ENST00000572904.6:ENST00000432791.7:ENST00000575318.6:ENST00000638275.1:ENST00000262419.10:ENST00000648792.1:ENST00000639531.1:ENST00000639150.1:ENST00000639853.1:ENST00000571698.2:ENST00000639375.1:ENST00000577114.2:ENST00000639279.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	65	2	1.39189	1.641205	1.89052	0.0751636	0.0148147	0.193731	0.106702
chr1	53830428	53830526	460532	0	-	0.408163	(0.378,0.408]	chr1	55439	19	INTRON	INTRON	NDC1	ENSG00000058804.12	ENST00000371429.4:ENST00000480952.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	47	2	1.45712	1.64116	1.8252	0.0619563	0.0597975	0.189982	0.174514
chr2	235584124	235584224	1042238	0	+	0.4	(0.378,0.408]	chr2	111222	592	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1:ENST00000402604.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	47	2	1.45712	1.64116	1.8252	0.0619563	0.0597975	0.189982	0.174514
chr1	205715004	205715103	623529	0	-	0.333333	(0.32,0.35]	chr1	74160	23	UTR3	UTR3:EXON_MRNA	NUCKS1	ENSG00000069275.13	ENST00000367142.5	protein_coding	protein_coding	protein_coding	protein_coding	23	209	2	1.31014	1.641145	1.97215	0.0240702	0.00288083	0.129859	0.0475859
chr15	65785232	65785331	6209726	0	-	0.474747	(0.44,0.476]	chr15	592617	180	INTRON	INTRON	DENND4A	ENSG00000174485.16	ENST00000443035.8:ENST00000431932.6:ENST00000564674.5:ENST00000568515.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	11	76	2	1.21196	1.64106	2.07016	0.0542558	0.0151815	0.182243	0.0994339
chr5	139277238	139277336	2499204	0	+	0.530612	(0.515,0.57]	chr5	238870	7	INTRON	INTRON	MATR3:SNHG4	ENSG00000280987.4:ENSG00000281398.4	ENST00000509990.5:ENST00000506147.5:ENST00000512107.5:ENST00000648842.1:ENST00000448190.6:ENST00000361059.7:ENST00000506188.5:ENST00000507692.5:ENST00000394800.6:ENST00000502929.5:ENST00000504203.5:ENST00000514694.5:ENST00000513259.5:ENST00000507197.5:ENST00000509644.5:ENST00000505016.2:ENST00000505522.6:ENST00000514110.5:ENST00000508735.5:ENST00000502394.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	9	62	2	1.60221	1.64074	1.67927	0.0581855	0.0157733	0.188704	0.101453
chr19	1206818	1206913	6994202	0	+	0.621053	(0.57,1]	chr19	692885	12	UTR5	UTR5:EXON_MRNA:INTRON	STK11	ENSG00000118046.17	ENST00000585748.2:ENST00000326873.12:ENST00000652231.1:ENST00000593219.5:ENST00000589152.5:ENST00000585851.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	19	73	2	1.59031	1.64069	1.69107	0.00821658	0.00609159	0.0812248	0.0676501
chr2	71409873	71409972	807827	0	+	0.373737	(0.35,0.378]	chr2	90285	7	INTRON	INTRON	ZNF638	ENSG00000075292.19	ENST00000409544.5:ENST00000264447.9:ENST00000487638.5:ENST00000494241.5:ENST00000409407.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	10	78	2	1.25085	1.6405599999999998	2.03027	0.0565857	0.0185322	0.184867	0.108861
chr6	3084577	3084674	2788280	0	+	0.494845	(0.476,0.515]	chr6	263326	14	UTR3	UTR3:EXON_MRNA:INTRON	RIPK1	ENSG00000137275.16	ENST00000678809.1:ENST00000678874.1:ENST00000380409.3:ENST00000677799.1:ENST00000677261.1:ENST00000676758.1:ENST00000676995.1:ENST00000679118.1:ENST00000479389.1:ENST00000676591.1:ENST00000259808.9:ENST00000676618.1:ENST00000678084.1:ENST00000677361.1:ENST00000676965.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	69	2	1.4095	1.640485	1.87147	0.054012	0.0157856	0.16443	0.109464
chrX	24077652	24077749	7630973	0	+	0.463918	(0.44,0.476]	chrX	781497	10	UTR3	UTR3:EXON_MRNA	EIF2S3	ENSG00000130741.11	ENST00000253039.9	protein_coding	protein_coding	protein_coding	protein_coding	23	177	2	1.4427	1.64045	1.8382	0.013933	0.0033450900000000002	0.10247	0.0513386
chr6	33398978	33399069	2847012	0	+	0.43956	(0.408,0.44]	chr6	268657	2	INTRON	INTRON	KIFC1	ENSG00000237649.8	ENST00000428849.7:ENST00000450504.1	protein_coding	protein_coding	protein_coding	protein_coding	8	62	2	1.53263	1.64038	1.74813	0.0733439	0.0163902	0.190051	0.109715
chr12	91526470	91526570	5384481	0	-	0.31	(0.28,0.32]	chr12	513485	192	INTRON	INTRON	ENSG00000289605	ENSG00000289605.1	ENST00000685093.1	lncRNA	lncRNA	lncRNA	lncRNA	6	58	2	1.51776	1.640345	1.76293	0.0766478	0.0528371	0.196164	0.178899
chr7	881577	881675	3269159	0	+	0.285714	(0.28,0.32]	chr7	303674	29	INTRON	INTRON	SUN1:GET4	ENSG00000164828.18:ENSG00000239857.7	ENST00000457861.1:ENST00000265857.8:ENST00000412734.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	58	2	1.51776	1.640345	1.76293	0.0766478	0.0528371	0.196164	0.178899
chr9	37267577	37267677	4119133	0	+	0.57	(0.515,0.57]	chr9	375389	807	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000461038.5:ENST00000488607.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	59	2	1.33814	1.64031	1.94248	0.063703	0.0115668	0.177689	0.0962115
chr16	89594658	89594727	6421128	0	+	0.463768	(0.44,0.476]	chr16	616411	1	INTRON	INTRON	CPNE7	ENSG00000178773.15	ENST00000319518.13:ENST00000268720.9:ENST00000529800.5:ENST00000568977.1:ENST00000566398.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	14	107	2	1.50441	1.640095	1.77578	0.0219054	0.0105236	0.114982	0.0908969
chr19	46783696	46783796	7195373	0	-	0.53	(0.515,0.57]	chr19	728993	2	SS5_PROX	SS5_PROX:INTRON	SLC1A5	ENSG00000105281.12	ENST00000542575.6:ENST00000594991.5:ENST00000434726.6:ENST00000412532.6:ENST00000593713.1:ENST00000598022.1	protein_coding	protein_coding	protein_coding	protein_coding	9	59	2	1.58964	1.6400549999999998	1.69047	0.0408	0.0195683	0.1451	0.120063
chr12	909186	909284	5057786	0	+	0.469388	(0.44,0.476]	chr12	477599	5	UTR3	UTR3:EXON_MRNA	WNK1	ENSG00000060237.19	ENST00000315939.11:ENST00000340908.9:ENST00000535572.5:ENST00000537687.5:ENST00000530271.6:ENST00000675631.1	protein_coding	protein_coding	protein_coding	protein_coding	12	92	2	1.38315	1.64002	1.89689	0.0472692	0.00630125	0.152795	0.0722266
chr9	37189351	37189451	4118350	0	+	0.48	(0.476,0.515]	chr9	375389	24	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000461038.5:ENST00000488607.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	17	134	2	1.26354	1.63991	2.01628	0.0401772	0.00249305	0.161534	0.0446195
chr9	33822913	33823013	4110281	0	+	0.47	(0.44,0.476]	chr9	374684	46	INTRON	INTRON	UBE2R2	ENSG00000107341.5	ENST00000263228.4	protein_coding	protein_coding	protein_coding	protein_coding	8	61	2	1.61163	1.6396899999999999	1.66775	0.0598319	0.0219883	0.169278	0.123836
chr6	27131179	27131277	3072350	0	-	0.326531	(0.32,0.35]	chr6	285574	44	INTRON	INTRON	H2BC11	ENSG00000124635.9	ENST00000607124.1:ENST00000606923.1	protein_coding	protein_coding	protein_coding	protein_coding	13	100	2	1.1183	1.639645	2.16099	0.061246	0.0127227	0.193423	0.0926667
chrX	71574093	71574193	7680383	0	+	0.34	(0.32,0.35]	chrX	786485	4	UTR3	UTR3:EXON_MRNA	OGT	ENSG00000147162.14	ENST00000373719.8:ENST00000488174.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	46	393	2	1.63689	1.6396199999999999	1.64235	0.00664397	0.00214218	0.0703807	0.0429873
chr16	23918539	23918639	6324586	0	+	0.5	(0.476,0.515]	chr16	605701	248	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000498739.1	protein_coding	protein_coding	protein_coding	protein_coding	14	105	2	1.5983	1.63957	1.68084	0.0172143	0.0132605	0.104099	0.100131
chr10	27538775	27538873	4413734	0	+	0.316327	(0.28,0.32]	chr10	407104	8	UTR3	UTR3:EXON_MRNA:INTRON	RAB18	ENSG00000099246.18	ENST00000682082.1:ENST00000611151.5:ENST00000621805.5:ENST00000535776.6:ENST00000682518.1:ENST00000356940.11:ENST00000682852.1:ENST00000683419.1:ENST00000683816.1:ENST00000682389.1:ENST00000684393.1:ENST00000683755.1:ENST00000682181.1:ENST00000682963.1:ENST00000682668.1:ENST00000682173.1:ENST00000684134.1:ENST00000682777.1:ENST00000684191.1:ENST00000682347.1:ENST00000683030.1:ENST00000683915.1:ENST00000684457.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	112	2	1.34325	1.639345	1.93544	0.0299564	0.0276828	0.142135	0.123904
chr11	61966488	61966588	4958194	0	-	0.43	(0.408,0.44]	chr11	466168	1	SS5_PROX	SS5_PROX:INTRON	FTH1	ENSG00000167996.16	ENST00000529191.5:ENST00000529631.5:ENST00000530019.5:ENST00000273550.12:ENST00000534180.1:ENST00000532829.5:ENST00000620041.4:ENST00000526640.5:ENST00000532601.1:ENST00000534719.1:ENST00000533138.1:ENST00000529548.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	30	225	2	1.51992	1.639345	1.75877	0.0124119	0.00159371	0.0918925	0.0367961
chr8	26411187	26411284	3717221	0	+	0.268041	[0,0.28]	chr8	345493	9	UTR3	UTR3:EXON_MRNA:INTRON	BNIP3L	ENSG00000104765.16	ENST00000380629.7:ENST00000523949.5	protein_coding	protein_coding	protein_coding	protein_coding	9	100	2	1.59412	1.63929	1.68446	0.0729426	0.0190521	0.189278	0.11904000000000001
chr15	52023612	52023709	6029064	0	+	0.546392	(0.515,0.57]	chr15	574417	17	INTRON	INTRON	MAPK6	ENSG00000069956.14	ENST00000560802.1:ENST00000691380.1:ENST00000558063.5:ENST00000560254.1:ENST00000681888.1:ENST00000261845.7:ENST00000680066.1:ENST00000680777.1:ENST00000558100.1:ENST00000680652.1:ENST00000558841.1:ENST00000558891.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	15	92	2	1.12407	1.63918	2.15429	0.0581599	0.00272344	0.167723	0.0481781
chr16	11906625	11906724	6446318	0	-	0.292929	(0.28,0.32]	chr16	621130	26	INTRON	INTRON	GSPT1	ENSG00000103342.13	ENST00000434724.7:ENST00000439887.6:ENST00000420576.6:ENST00000568849.5:ENST00000562169.1	protein_coding	protein_coding	protein_coding	protein_coding	7	70	2	1.51776	1.6391200000000001	1.76048	0.0528371	0.0450149	0.178899	0.149888
chr2	170993581	170993680	1262398	0	-	0.323232	(0.32,0.35]	chr2	133785	29	UTR3	UTR3:EXON_MRNA	TLK1	ENSG00000198586.14	ENST00000431350.7:ENST00000360843.7:ENST00000359766.7:ENST00000521943.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	51	431	2	1.48809	1.6390699999999998	1.79005	0.00432541	0.00300035	0.0599724	0.0493149
chr16	21877047	21877146	6462014	0	-	0.383838	(0.378,0.408]	chr16	623467	109	INTRON	INTRON	NPIPB4	ENSG00000185864.18	ENST00000543449.1:ENST00000538859.1	protein_coding	processed_transcript	protein_coding	processed_transcript	39	305	2	1.57528	1.638995	1.70271	0.00362871	0.00352657	0.0554891	0.0527555
chr21	39222423	39222522	7464601	0	-	0.40404	(0.378,0.408]	chr21	760426	34	INTRON	INTRON	BRWD1	ENSG00000185658.14	ENST00000333229.6:ENST00000342449.8:ENST00000446924.5:ENST00000380800.7:ENST00000424441.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	64	2	1.53052	1.6389200000000002	1.74732	0.0744544	0.0166132	0.192012	0.110511
chr21	43103220	43103320	7468300	0	-	0.48	(0.476,0.515]	chr21	761118	19	EXON_MRNA	EXON_MRNA:INTRON	U2AF1	ENSG00000160201.12	ENST00000291552.9:ENST00000380276.6:ENST00000464750.5:ENST00000475639.5:ENST00000459639.5:ENST00000486519.5:ENST00000463599.5:ENST00000496462.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	54	2	1.53534	1.63892	1.7425	0.0476737	0.0417334	0.170116	0.147007
chr1	51755419	51755519	100793	0	+	0.31	(0.28,0.32]	chr1	13319	23	INTRON	INTRON	OSBPL9	ENSG00000117859.19	ENST00000371714.5:ENST00000428468.6:ENST00000447887.5:ENST00000495776.5:ENST00000435274.6:ENST00000453295.5:ENST00000489990.5:ENST00000484890.5:ENST00000532975.5:ENST00000534040.5:ENST00000527631.5:ENST00000531828.5:ENST00000361556.9:ENST00000473207.6:ENST00000533884.5:ENST00000481937.5:ENST00000526917.5:ENST00000462759.5:ENST00000486942.5:ENST00000524620.1:ENST00000528603.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	105	2	1.51821	1.6387	1.75919	0.0300418	0.0249506	0.132531	0.129138
chr16	84773085	84773185	6410656	0	+	0.48	(0.476,0.515]	chr16	615345	4	SS5_PROX	SS5_PROX:INTRON	USP10	ENSG00000103194.16	ENST00000540269.6:ENST00000219473.12:ENST00000570191.5:ENST00000563048.5:ENST00000569925.1:ENST00000567526.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	45	2	1.48023	1.63858	1.79693	0.0649782	0.0559072	0.18407	0.179417
chr5	54359182	54359282	2354214	0	+	0.36	(0.35,0.378]	chr5	227061	185	INTRON	INTRON	LINC01033	ENSG00000249069.8	ENST00000665899.1:ENST00000653566.1:ENST00000655801.1:ENST00000654906.1:ENST00000667636.1:ENST00000665869.1:ENST00000664079.1:ENST00000659703.1:ENST00000662351.1:ENST00000523194.7:ENST00000665795.1:ENST00000667992.1:ENST00000662022.1:ENST00000657771.1:ENST00000517934.1	lncRNA	lncRNA	lncRNA	lncRNA	10	84	2	1.31002	1.638525	1.96703	0.0562395	0.0135243	0.184114	0.0949306
chr1	29046445	29046544	60288	0	+	0.323232	(0.32,0.35]	chr1	7705	51	INTRON	INTRON	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000647918.1:ENST00000646800.1:ENST00000644342.1:ENST00000646189.1:ENST00000482464.6:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000646260.1:ENST00000373798.5:ENST00000644600.1:ENST00000649674.1:ENST00000643173.1:ENST00000343067.9:ENST00000644780.1:ENST00000650265.1:ENST00000648181.1:ENST00000643604.1:ENST00000648891.1:ENST00000373797.2:ENST00000349460.9:ENST00000645184.1:ENST00000645111.1:ENST00000643302.1:ENST00000645999.1:ENST00000642643.1:ENST00000636666.1:ENST00000644848.1:ENST00000644470.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	53	2	1.49965	1.638345	1.77704	0.0719969	0.0542985	0.187322	0.182243
chr10	67886823	67886916	4440421	0	+	0.268817	[0,0.28]	chr10	409422	11	INTRON	INTRON	SIRT1	ENSG00000096717.12	ENST00000212015.11:ENST00000432464.5:ENST00000497639.5:ENST00000473922.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	129	2	1.41743	1.638315	1.8592	0.0326282	0.0250628	0.145164	0.12011
chr6	17977073	17977173	3068448	0	-	0.4	(0.378,0.408]	chr6	285105	253	INTRON	INTRON	KIF13A	ENSG00000137177.20	ENST00000378814.9:ENST00000259711.11:ENST00000378826.6:ENST00000378843.6:ENST00000636847.1:ENST00000507576.1:ENST00000505588.1:ENST00000502704.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	11	79	2	1.17446	1.63829	2.10212	0.0614357	0.0141232	0.193423	0.0959618
chr4	73209590	73209690	2160334	0	-	0.31	(0.28,0.32]	chr4	212794	317	INTRON	INTRON	ANKRD17	ENSG00000132466.20	ENST00000358602.9:ENST00000558247.5:ENST00000330838.10:ENST00000509867.6:ENST00000561029.1:ENST00000559367.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	101	2	1.56481	1.63825	1.71169	0.0339805	0.0253232	0.146815	0.12011
chr1	77968521	77968612	494423	0	-	0.406593	(0.378,0.408]	chr1	58555	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	FUBP1	ENSG00000162613.17	ENST00000370768.7:ENST00000294623.8:ENST00000370767.5:ENST00000421641.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	69	2	1.49864	1.63823	1.77782	0.0388177	0.0302065	0.143072	0.142764
chr4	468182	468282	2092861	0	-	0.5	(0.476,0.515]	chr4	206783	234	INTRON	INTRON	ABCA11P:ZNF721	ENSG00000251595.7:ENSG00000182903.16	ENST00000451020.6:ENST00000514396.5:ENST00000507854.1:ENST00000515578.5:ENST00000506646.5:ENST00000507078.1:ENST00000511833.3:ENST00000338977.5:ENST00000505900.1	protein_coding	protein_coding	protein_coding:transcribed_processed_pseudogene	protein_coding:nonsense_mediated_decay:processed_transcript	14	107	2	1.58148	1.6381999999999999	1.69492	0.0175606	0.0127656	0.11319	0.0926667
chr5	139567800	139567900	2500568	0	+	0.46	(0.44,0.476]	chr5	239026	50	INTRON	INTRON	UBE2D2	ENSG00000131508.16	ENST00000511725.5:ENST00000505007.5:ENST00000398733.8:ENST00000510470.1:ENST00000398734.8:ENST00000505548.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	85	2	1.56865	1.63814	1.70763	0.0259267	0.0190437	0.121619	0.118994
chr15	92922741	92922839	6103919	0	+	0.489796	(0.476,0.515]	chr15	581409	9	INTRON	INTRON	ENSG00000279765:CHD2	ENSG00000279765.3:ENSG00000173575.22	ENST00000629685.2:ENST00000630790.1:ENST00000626874.2:ENST00000394196.9:ENST00000635856.1:ENST00000420239.7:ENST00000628375.2:ENST00000625990.3:ENST00000626782.2:ENST00000629136.1:ENST00000636861.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	60	2	1.43644	1.6380249999999998	1.83961	0.047372	0.0314489	0.169265	0.13151
chr3	138823614	138823714	1831389	0	-	0.53	(0.515,0.57]	chr3	184062	267	INTRON	INTRON	PIK3CB	ENSG00000051382.9	ENST00000674063.1:ENST00000477593.5:ENST00000462898.5:ENST00000483968.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	77	2	1.59358	1.6379700000000001	1.68236	0.0211981	0.0158706	0.113017	0.109464
chr11	63683076	63683176	4799929	0	+	0.41	(0.408,0.44]	chr11	444936	9	INTRON	INTRON	RTN3	ENSG00000133318.14	ENST00000341307.6:ENST00000356000.7:ENST00000542238.5:ENST00000538995.1:ENST00000339997.8:ENST00000540798.5:ENST00000537981.5:ENST00000377819.10:ENST00000536011.5:ENST00000543123.1:ENST00000543552.5:ENST00000545432.5:ENST00000338850.5:ENST00000354497.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	63	2	1.62122	1.63793	1.6546400000000001	0.0394247	0.0329965	0.145298	0.143072
chr3	183758965	183759065	1580912	0	+	0.32	(0.28,0.32]	chr3	163090	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	YEATS2	ENSG00000163872.16	ENST00000305135.10	protein_coding	protein_coding	protein_coding	protein_coding	6	61	2	1.56134	1.63788	1.71442	0.0740624	0.0454351	0.191153	0.164236
chr22	19484901	19485000	7476885	0	+	0.383838	(0.378,0.408]	chr22	762407	5	INTRON	INTRON	CDC45	ENSG00000093009.11	ENST00000407835.6:ENST00000437685.6:ENST00000483431.5:ENST00000438587.6:ENST00000672837.1:ENST00000263201.7:ENST00000404724.7:ENST00000487669.5:ENST00000428937.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	29	228	2	1.62903	1.6377549999999998	1.64648	0.00624059	0.00435708	0.0683038	0.0603467
chr16	2258365	2258462	6431594	0	-	0.453608	(0.44,0.476]	chr16	618786	28	EXON_MRNA	EXON_MRNA:INTRON	RNPS1	ENSG00000205937.12	ENST00000397086.6:ENST00000566458.5:ENST00000320225.10:ENST00000566397.5:ENST00000565678.5:ENST00000561718.5:ENST00000568631.5:ENST00000569598.6:ENST00000301730.12:ENST00000567147.5:ENST00000565243.2:ENST00000565870.5:ENST00000561518.5:ENST00000564311.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	45	2	1.43625	1.63762	1.83899	0.063142	0.0589734	0.197183	0.167915
chr1	1394519	1394613	359866	0	-	0.489362	(0.476,0.515]	chr1	41791	7	INTRON	INTRON	CCNL2	ENSG00000221978.13	ENST00000400809.8:ENST00000482621.5:ENST00000496007.5:ENST00000481223.6:ENST00000488340.5:ENST00000471930.5:ENST00000408918.8:ENST00000473872.5:ENST00000425598.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	15	113	2	1.57305	1.637515	1.70198	0.0202368	0.00854639	0.109958	0.0836849
chr11	61799725	61799824	4957343	0	-	0.373737	(0.35,0.378]	chr11	465946	2	UTR3	UTR3:EXON_MRNA	FADS1	ENSG00000149485.19	ENST00000350997.12	protein_coding	protein_coding	protein_coding	protein_coding	39	330	2	1.13281	1.637465	2.14212	0.0277934	4.9143e-4	0.137011	0.0205704
chr10	21704000	21704099	4406130	0	+	0.383838	(0.378,0.408]	chr10	406537	70	INTRON	INTRON	MLLT10	ENSG00000078403.17	ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000651298.1:ENST00000377059.7:ENST00000651382.1:ENST00000438473.6:ENST00000420525.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	15	119	2	1.40915	1.6373449999999998	1.86554	0.0372808	0.00411556	0.139807	0.0585811
chr16	28828051	28828145	6334382	0	+	0.319149	(0.28,0.32]	chr16	606524	7	INTRON	INTRON	ATXN2L	ENSG00000168488.19	ENST00000336783.9:ENST00000563314.5:ENST00000340394.12:ENST00000382686.8:ENST00000395547.6:ENST00000325215.10:ENST00000564304.5:ENST00000570200.5:ENST00000568266.5:ENST00000565971.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	89	2	1.60965	1.637315	1.66498	0.0460888	0.0244852	0.150099	0.131869
chr17	29259538	29259638	6747448	0	-	0.49	(0.476,0.515]	chr17	663218	38	UTR3	UTR3:EXON_MRNA	NUFIP2	ENSG00000108256.9	ENST00000225388.9	protein_coding	protein_coding	protein_coding	protein_coding	31	225	2	1.45256	1.63726	1.82196	0.00748363	0.00304728	0.0772645	0.0493883
chr16	88932938	88933037	6540855	0	-	0.525253	(0.515,0.57]	chr16	634096	306	INTRON	INTRON	CBFA2T3	ENSG00000129993.15	ENST00000268679.9:ENST00000327483.9:ENST00000569464.5:ENST00000569443.5:ENST00000563640.1:ENST00000564416.1:ENST00000570046.1	protein_coding	protein_coding	protein_coding	protein_coding	9	60	2	1.32981	1.63715	1.94449	0.0640038	0.0122196	0.199279	0.0910127
chr8	102355078	102355178	4012175	0	-	0.36	(0.35,0.378]	chr8	367218	76	INTRON	INTRON	UBR5	ENSG00000104517.13	ENST00000520539.6:ENST00000220959.8:ENST00000521922.5	protein_coding	protein_coding	protein_coding	protein_coding	17	141	2	1.46081	1.6370399999999998	1.81327	0.0324753	0.00363078	0.13353	0.0555189
chr11	2960057	2960131	4891664	0	-	0.445946	(0.44,0.476]	chr11	458307	3	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	NAP1L4	ENSG00000205531.13	ENST00000620138.4:ENST00000380542.9:ENST00000526115.5:ENST00000492685.5:ENST00000528363.5:ENST00000483643.7:ENST00000532325.6:ENST00000448187.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	77	2	1.38203	1.6370149999999999	1.892	0.058781	0.00935701	0.167915	0.0858596
chr9	128269649	128269744	4358165	0	-	0.568421	(0.515,0.57]	chr9	400429	3	INTRON	INTRON	GOLGA2	ENSG00000167110.19	ENST00000421699.8:ENST00000611957.5:ENST00000693185.1:ENST00000686291.1:ENST00000687179.1:ENST00000458730.3:ENST00000693047.1:ENST00000686884.1:ENST00000693180.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	17	105	2	1.47102	1.6369850000000001	1.80295	0.0129092	0.00965183	0.0990564	0.0826279
chr14	103557933	103558033	5972116	0	-	0.41	(0.408,0.44]	chr14	567623	15	UTR3	UTR3:EXON_MRNA	BAG5	ENSG00000166170.12	ENST00000445922.2:ENST00000299204.6	protein_coding	protein_coding	protein_coding	protein_coding	9	68	2	1.29079	1.636945	1.9831	0.0625053	0.018491	0.175709	0.116694
chr7	138462901	138463001	3434667	0	+	0.59	(0.57,1]	chr7	319959	12	INTRON	INTRON	TRIM24	ENSG00000122779.18	ENST00000343526.9:ENST00000415680.6:ENST00000497516.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	32	2	1.55956	1.6369	1.71424	0.0448639	0.0279017	0.149888	0.137011
chr2	152746829	152746929	894540	0	+	0.48	(0.476,0.515]	chr2	99130	96	INTRON	INTRON	ARL6IP6	ENSG00000177917.12	ENST00000690727.1:ENST00000685752.1:ENST00000688293.1:ENST00000686839.1:ENST00000689155.1:ENST00000691702.1:ENST00000691523.1:ENST00000688012.1:ENST00000687504.1:ENST00000455875.6:ENST00000692399.1:ENST00000425034.6:ENST00000686080.1:ENST00000326446.10:ENST00000463690.2:ENST00000688130.1:ENST00000495469.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	89	2	1.38864	1.6366450000000001	1.88465	0.0547008	0.00780969	0.182743	0.0759016
chr19	1273936	1274029	6994638	0	+	0.462366	(0.44,0.476]	chr19	693007	4	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CIRBP	ENSG00000099622.14	ENST00000591935.5:ENST00000585913.5:ENST00000586773.5:ENST00000587896.6:ENST00000593093.5:ENST00000590347.5:ENST00000587169.5:ENST00000586636.5:ENST00000591376.5:ENST00000589235.5:ENST00000585914.5:ENST00000592234.5:ENST00000444172.6:ENST00000590188.5:ENST00000588917.2:ENST00000586555.2:ENST00000621399.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	25	187	2	1.50864	1.636565	1.76449	0.0142443	0.00233639	0.0962435	0.0442989
chr8	23529810	23529908	3715105	0	+	0.622449	(0.57,1]	chr8	345213	2	INTRON	INTRON	SLC25A37	ENSG00000147454.14	ENST00000519973.6:ENST00000290075.10:ENST00000417331.6:ENST00000518881.5:ENST00000519192.1:ENST00000520654.1:ENST00000523930.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	15	58	2	1.36804	1.636555	1.90507	0.0305922	0.00375525	0.131174	0.0562562
chr20	41029955	41030054	7273517	0	+	0.30303	(0.28,0.32]	chr20	739216	1	INTRON	INTRON	TOP1	ENSG00000198900.7	ENST00000361337.3:ENST00000681113.1:ENST00000681058.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	65	2	1.45717	1.636495	1.81582	0.068122	0.0472947	0.184298	0.16913
chr2	15524245	15524345	1072791	0	-	0.45	(0.44,0.476]	chr2	114441	125	INTRON	INTRON	NBAS	ENSG00000151779.13	ENST00000281513.10	protein_coding	protein_coding	protein_coding	protein_coding	15	113	2	1.49531	1.63648	1.77765	0.0421587	0.0039859	0.148082	0.057767
chr10	119595069	119595165	4706018	0	-	0.395833	(0.378,0.408]	chr10	434252	12	INTRON	INTRON	TIAL1	ENSG00000151923.18	ENST00000369093.6:ENST00000436547.7:ENST00000489822.5:ENST00000497671.5:ENST00000479729.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	72	2	1.56313	1.63633	1.70953	0.0474151	0.0190881	0.153019	0.119229
chr1	52437880	52437960	457381	0	-	0.6	(0.57,1]	chr1	54956	2	SS3_PROX	SS3_PROX:SS5_PROX:INTRON	TUT4	ENSG00000134744.14	ENST00000371544.7:ENST00000257177.9:ENST00000531722.5:ENST00000474453.6:ENST00000469810.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	16	55	2	1.04899	1.6363250000000003	2.22366	0.0593415	0.00344378	0.168781	0.0539802
chr8	26308715	26308815	3716268	0	+	0.39	(0.378,0.408]	chr8	345372	37	INTRON	INTRON	PPP2R2A	ENSG00000221914.11	ENST00000380737.8:ENST00000520329.5:ENST00000518254.5:ENST00000524169.5:ENST00000518397.5:ENST00000522535.5:ENST00000665949.1:ENST00000522150.5:ENST00000523473.5:ENST00000521095.5:ENST00000660435.1:ENST00000523925.5:ENST00000524099.5:ENST00000315985.7:ENST00000519636.5:ENST00000522482.5:ENST00000521557.5:ENST00000519439.5:ENST00000521484.5:ENST00000523964.5:ENST00000667651.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	47	2	1.51223	1.636275	1.76032	0.0721577	0.051139	0.187433	0.176696
chr1	92840124	92840198	162513	0	+	0.432432	(0.408,0.44]	chr1	17544	2	SS3_PROX	SS3_PROX:INTRON	RPL5	ENSG00000122406.14	ENST00000645300.1:ENST00000370321.8:ENST00000645119.1:ENST00000497519.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	71	2	1.51451	1.6362100000000002	1.75791	0.0378795	0.0313913	0.157034	0.13151
chr16	16654163	16654262	6312407	0	+	0.242424	[0,0.28]	chr16	604112	53	INTRON	INTRON	ENSG00000260126	ENSG00000260126.2	ENST00000567465.2	lncRNA	lncRNA	lncRNA	lncRNA	9	107	2	1.56918	1.63619	1.7032	0.0481076	0.0294268	0.171525	0.128055
chr5	134172808	134172906	2726315	0	-	0.44898	(0.44,0.476]	chr5	256501	14	INTRON	INTRON	SKP1	ENSG00000113558.19	ENST00000353411.11:ENST00000522552.5:ENST00000521216.5:ENST00000517625.5:ENST00000523966.5:ENST00000522855.5:ENST00000328392.10:ENST00000519054.5:ENST00000519321.5:ENST00000520417.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	69	2	1.62674	1.636185	1.64563	0.0363922	0.0253995	0.138959	0.133676
chr17	29408200	29408300	6585814	0	+	0.5	(0.476,0.515]	chr17	640377	42	INTRON	INTRON	TAOK1	ENSG00000160551.12	ENST00000261716.8:ENST00000583121.5:ENST00000587277.1:ENST00000536202.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	69	2	1.50151	1.63612	1.77073	0.054954	0.0151174	0.165463	0.108513
chr1	23031533	23031632	43879	0	+	0.323232	(0.32,0.35]	chr1	5258	5	INTRON	INTRON	KDM1A	ENSG00000004487.18	ENST00000692214.1:ENST00000686934.1:ENST00000689853.1:ENST00000465864.2:ENST00000691256.1:ENST00000688122.1:ENST00000692056.1:ENST00000692853.1:ENST00000689366.1:ENST00000686270.1:ENST00000685102.1:ENST00000690627.1:ENST00000686771.1:ENST00000692209.1:ENST00000686339.1:ENST00000691813.1:ENST00000693156.1:ENST00000688235.1:ENST00000692975.1:ENST00000687202.1:ENST00000691682.1:ENST00000691404.1:ENST00000691694.1:ENST00000688680.1:ENST00000356634.7:ENST00000400181.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	14	105	2	1.11066	1.635825	2.16099	0.0576725	0.0127227	0.188176	0.0926667
chr5	53990213	53990313	2617706	0	-	0.32	(0.28,0.32]	chr5	248835	782	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	19	185	2	1.50113	1.6355650000000002	1.77	0.024325	0.00535623	0.12011	0.0663076
chr12	111578867	111578967	5413028	0	-	0.53	(0.515,0.57]	chr12	516941	141	INTRON	INTRON	ATXN2	ENSG00000204842.18	ENST00000642389.2:ENST00000608853.5:ENST00000672613.1:ENST00000673436.1:ENST00000643669.2:ENST00000616825.4:ENST00000389153.10:ENST00000550104.5:ENST00000483311.6:ENST00000672335.1:ENST00000673557.1:ENST00000673283.1:ENST00000673449.1:ENST00000535949.5:ENST00000542287.6:ENST00000644883.1:ENST00000647305.1:ENST00000671792.1:ENST00000392645.6:ENST00000672105.1:ENST00000549455.1:ENST00000548492.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	15	97	2	1.43443	1.63552	1.83661	0.0306384	0.00418335	0.131364	0.0591344
chr10	922983	923083	4542500	0	-	0.53	(0.515,0.57]	chr10	419304	196	INTRON	INTRON	LARP4B	ENSG00000107929.16	ENST00000316157.8:ENST00000690516.1:ENST00000476529.5:ENST00000406525.6:ENST00000481118.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	18	116	2	1.43515	1.634985	1.83482	0.0254996	0.00264199	0.12024	0.047346
chr11	6483893	6483992	4727790	0	+	0.323232	(0.32,0.35]	chr11	437617	18	UTR3	UTR3:EXON_MRNA	TIMM10B	ENSG00000132286.12	ENST00000254616.11	protein_coding	protein_coding	protein_coding	protein_coding	10	89	2	1.437	1.634975	1.83295	0.0386366	0.0224097	0.159793	0.11692
chr16	15700036	15700127	6307398	0	+	0.483516	(0.476,0.515]	chr16	603479	3	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	NDE1	ENSG00000072864.16	ENST00000396355.5:ENST00000674888.1:ENST00000675171.1:ENST00000675951.1:ENST00000674900.1:ENST00000674588.1:ENST00000674538.1:ENST00000396354.6:ENST00000675926.1:ENST00000674995.1:ENST00000674554.1:ENST00000674581.1:ENST00000577101.6:ENST00000572756.6:ENST00000573694.5:ENST00000576502.5:ENST00000572967.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	60	2	1.33919	1.63489	1.93059	0.06316	0.023762	0.197199	0.118822
chr10	123163719	123163819	4533256	0	+	0.38	(0.378,0.408]	chr10	418441	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	BUB3	ENSG00000154473.18	ENST00000368865.9:ENST00000368859.6:ENST00000368858.9	protein_coding	protein_coding	protein_coding	protein_coding	9	72	2	1.52219	1.634755	1.74732	0.0531838	0.0166132	0.162538	0.110511
chr9	5047701	5047801	4096451	0	+	0.5	(0.476,0.515]	chr9	373255	28	INTRON	INTRON	JAK2	ENSG00000096968.14	ENST00000636127.1:ENST00000381652.4	protein_coding	protein_coding	protein_coding	protein_coding	6	47	2	1.52615	1.63466	1.74317	0.0739267	0.0396373	0.190914	0.161534
chr1	21142291	21142391	393284	0	-	0.46	(0.44,0.476]	chr1	46836	293	INTRON	INTRON	EIF4G3	ENSG00000075151.24	ENST00000374935.7:ENST00000602326.6:ENST00000685872.1:ENST00000686579.1:ENST00000688741.1:ENST00000400422.6:ENST00000634879.2:ENST00000693470.1:ENST00000685814.1:ENST00000356916.7:ENST00000682284.1:ENST00000438975.5:ENST00000411888.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	69	2	1.34221	1.634625	1.92704	0.0656882	0.0128054	0.181162	0.0990564
chr4	67493192	67493287	2152976	0	-	0.368421	(0.35,0.378]	chr4	211930	2	SS3_PROX	SS3_PROX:INTRON	CENPC	ENSG00000145241.11	ENST00000273853.11:ENST00000513216.5:ENST00000506882.5:ENST00000515140.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	68	2	1.44934	1.634445	1.81955	0.0658369	0.0194679	0.181518	0.11986
chr6	20450169	20450269	2827932	0	+	0.36	(0.35,0.378]	chr6	265583	101	INTRON	INTRON	E2F3	ENSG00000112242.16	ENST00000346618.8:ENST00000535432.2	protein_coding	protein_coding	protein_coding	protein_coding	8	68	2	1.44934	1.634445	1.81955	0.0658369	0.0194679	0.181518	0.11986
chr20	62905275	62905368	7362234	0	-	0.473118	(0.44,0.476]	chr20	751177	4	UTR3	UTR3:EXON_MRNA:INTRON	DIDO1	ENSG00000101191.17	ENST00000266070.8:ENST00000395343.6:ENST00000395340.5:ENST00000370371.8:ENST00000370368.5:ENST00000354665.8:ENST00000370366.1	protein_coding	protein_coding	protein_coding	protein_coding	28	205	2	1.22252	1.6343999999999999	2.04628	0.0279674	7.92523e-4	0.124587	0.0258804
chr1	156742778	156742873	568041	0	-	0.410526	(0.408,0.44]	chr1	68354	8	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	HDGF	ENSG00000143321.19	ENST00000357325.10:ENST00000368209.9:ENST00000537739.5:ENST00000465180.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	19	145	2	1.35993	1.634285	1.90864	0.0320982	0.00205309	0.132157	0.0420641
chr7	152315838	152315937	3680087	0	-	0.454545	(0.44,0.476]	chr7	341641	1	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000684262.1:ENST00000682301.1:ENST00000452749.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	77	2	1.34221	1.63421	1.92621	0.0656882	0.00813281	0.181162	0.0810802
chrX	71537610	71537669	7679991	0	+	0.237288	[0,0.28]	chrX	786392	1	SS3_PROX	SS3_PROX:INTRON	OGT	ENSG00000147162.14	ENST00000373719.8:ENST00000488174.5:ENST00000373701.7:ENST00000498566.3:ENST00000444774.3:ENST00000455587.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	80	2	1.55741	1.63415	1.71089	0.0792968	0.0318277	0.199711	0.14477
chr20	47314279	47314378	7349086	0	-	0.464646	(0.44,0.476]	chr20	749342	37	INTRON	INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000468376.2:ENST00000435836.5:ENST00000446894.5:ENST00000441977.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	71	2	1.60176	1.634045	1.66633	0.0389597	0.0243614	0.160861	0.12011
chr12	69266234	69266333	5163783	0	+	0.373737	(0.35,0.378]	chr12	489050	33	INTRON	INTRON	CPSF6	ENSG00000111605.18	ENST00000435070.7:ENST00000650046.1:ENST00000456847.7:ENST00000266679.8:ENST00000551516.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	68	2	1.49028	1.63382	1.77736	0.0590834	0.0225073	0.168067	0.124921
chr7	12374488	12374588	3485134	0	-	0.28	[0,0.28]	chr7	325920	4	SS5_PROX	SS5_PROX:INTRON	VWDE	ENSG00000146530.15	ENST00000275358.8:ENST00000452576.6:ENST00000521169.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	16	179	2	1.29036	1.633735	1.97711	0.053547	0.00478757	0.163215	0.0636848
chr3	9394885	9394985	1611695	0	-	0.36	(0.35,0.378]	chr3	166266	10	EXON_LNCRNA	EXON_LNCRNA:INTRON	THUMPD3-AS1	ENSG00000206573.10	ENST00000468186.5:ENST00000661342.1:ENST00000519043.5:ENST00000657509.1:ENST00000685076.1:ENST00000687342.1:ENST00000685952.1:ENST00000521609.5:ENST00000520629.5:ENST00000654392.1:ENST00000522525.6:ENST00000664441.2:ENST00000469846.3:ENST00000481221.7:ENST00000661714.1:ENST00000665983.1:ENST00000660363.1:ENST00000667458.1:ENST00000520447.1:ENST00000524210.2:ENST00000664273.1:ENST00000521267.5:ENST00000467069.6:ENST00000520396.1:ENST00000494680.6:ENST00000518437.3:ENST00000689821.1:ENST00000522221.2:ENST00000489616.1:ENST00000521708.1:ENST00000480904.2:ENST00000498199.1	lncRNA	lncRNA	lncRNA	lncRNA	10	80	2	1.19657	1.63353	2.07049	0.0724016	0.0140397	0.188044	0.102801
chr9	137718072	137718172	4224480	0	+	0.61	(0.57,1]	chr9	388223	4	INTRON	INTRON	EHMT1	ENSG00000181090.21	ENST00000462484.5:ENST00000371394.6:ENST00000460843.6:ENST00000629335.2:ENST00000636027.1:ENST00000460486.3:ENST00000637161.1:ENST00000637261.1:ENST00000637977.1:ENST00000626066.2:ENST00000638071.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	47	2	1.56203	1.63342	1.70481	0.0238371	0.0130959	0.129075	0.0934992
chr1	225407823	225407921	645544	0	-	0.285714	(0.28,0.32]	chr1	76339	6	INTRON	INTRON	LBR	ENSG00000143815.15	ENST00000272163.9:ENST00000338179.6:ENST00000651341.1:ENST00000424022.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	106	2	1.57779	1.63335	1.68891	0.0502605	0.0132814	0.156383	0.100261
chr8	11803166	11803243	3702523	0	+	0.623377	(0.57,1]	chr8	343481	3	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	FDFT1	ENSG00000079459.13	ENST00000538689.4:ENST00000615631.4:ENST00000618539.4:ENST00000530337.5:ENST00000623368.3:ENST00000446331.6:ENST00000443614.6:ENST00000220584.9:ENST00000525607.5:ENST00000525283.5:ENST00000529464.5:ENST00000525900.5:ENST00000525571.1:ENST00000527045.1:ENST00000528812.5:ENST00000622850.2:ENST00000525551.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	15	50	2	1.25453	1.633345	2.01216	0.0276168	0.0163389	0.137011	0.101571
chr11	61966588	61966688	4958195	0	-	0.41	(0.408,0.44]	chr11	466168	2	SS5_PROX	SS5_PROX:INTRON	FTH1	ENSG00000167996.16	ENST00000529191.5:ENST00000529631.5:ENST00000530019.5:ENST00000273550.12:ENST00000534180.1:ENST00000532829.5:ENST00000620041.4:ENST00000526640.5:ENST00000532601.1:ENST00000534719.1:ENST00000533138.1:ENST00000529548.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	15	113	2	1.50652	1.633225	1.75993	0.0410276	0.0043403	0.1451	0.0601329
chr14	102631011	102631111	5822917	0	+	0.45	(0.44,0.476]	chr14	552490	373	INTRON	INTRON	RCOR1	ENSG00000089902.10	ENST00000262241.7	protein_coding	protein_coding	protein_coding	protein_coding	7	54	2	1.60176	1.63319	1.66462	0.0520247	0.0389597	0.160861	0.159508
chr17	66330200	66330300	6662573	0	+	0.47	(0.44,0.476]	chr17	650320	237	INTRON	INTRON	PRKCA	ENSG00000154229.12	ENST00000413366.8:ENST00000578063.5:ENST00000583361.1:ENST00000284384.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	54	2	1.60176	1.63319	1.66462	0.0520247	0.0389597	0.160861	0.159508
chr7	158694190	158694286	3688692	0	-	0.333333	(0.32,0.35]	chr7	342273	3	INTRON	INTRON	NCAPG2	ENSG00000146918.20	ENST00000356309.8:ENST00000432615.5:ENST00000409423.5:ENST00000409339.3:ENST00000621338.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	82	2	1.38564	1.63317	1.8807	0.0793006	0.0106415	0.199711	0.0915714
chr22	38489757	38489857	7587916	0	-	0.54	(0.515,0.57]	chr22	776723	4	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	DDX17	ENSG00000100201.23	ENST00000403230.3:ENST00000396821.8:ENST00000216019.11:ENST00000475004.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	65	415	2	1.6233900000000001	1.6331000000000002	1.64281	0.00144778	0.00141106	0.0349151	0.0340865
chr2	112655133	112655232	852158	0	+	0.464646	(0.44,0.476]	chr2	95585	18	INTRON	INTRON	SLC20A1	ENSG00000144136.11	ENST00000272542.8:ENST00000498224.5:ENST00000433924.5:ENST00000456264.5:ENST00000413135.1:ENST00000480984.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	16	120	2	1.31658	1.633095	1.94961	0.0368761	0.00356879	0.139103	0.0548435
chr1	27472298	27472398	406586	0	-	0.43	(0.408,0.44]	chr1	48986	430	INTRON	INTRON	WASF2	ENSG00000158195.11	ENST00000618852.5:ENST00000536657.1	protein_coding	protein_coding	protein_coding	protein_coding	13	86	2	1.22006	1.633085	2.04611	0.0414473	0.016628	0.161692	0.102621
chr19	9565249	9565348	7132783	0	-	0.393939	(0.378,0.408]	chr19	718804	51	UTR3	UTR3:EXON_MRNA	ZNF121	ENSG00000197961.12	ENST00000320451.7:ENST00000586602.5	protein_coding	protein_coding	protein_coding	protein_coding	16	126	2	1.42806	1.63292	1.83778	0.0259645	0.00609624	0.12178	0.0706177
chrX	154783745	154783839	7915382	0	-	0.37234	(0.35,0.378]	chrX	806131	2	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MPP1	ENSG00000130830.15	ENST00000369534.8:ENST00000413259.7:ENST00000439370.5:ENST00000393531.5:ENST00000453245.5:ENST00000494170.1:ENST00000462825.5:ENST00000493871.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	23	189	2	1.11211	1.63285	2.15359	0.0553272	6.09282e-4	0.165463	0.0223951
chr11	68552860	68552958	4818267	0	+	0.377551	(0.35,0.378]	chr11	448965	13	INTRON	INTRON	PPP6R3	ENSG00000110075.15	ENST00000529907.5:ENST00000534534.5:ENST00000524845.5:ENST00000393800.7:ENST00000265637.8:ENST00000524904.5:ENST00000393801.7:ENST00000265636.9:ENST00000529710.5:ENST00000527403.6	protein_coding	protein_coding	protein_coding	protein_coding	8	66	2	1.55918	1.632625	1.70607	0.0482819	0.0326427	0.153283	0.145164
chr3	72423307	72423407	1745688	0	-	0.37	(0.35,0.378]	chr3	177368	428	INTRON	INTRON	RYBP	ENSG00000163602.12	ENST00000477973.5	protein_coding	protein_coding	protein_coding	protein_coding	10	72	2	1.33062	1.63247	1.93432	0.0481438	0.0374591	0.156024	0.153019
chr2	53891807	53891907	1119739	0	-	0.45	(0.44,0.476]	chr2	119908	12	INTRON	INTRON	PSME4	ENSG00000068878.15	ENST00000404125.6:ENST00000389993.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	45	2	1.49356	1.632285	1.77101	0.0693975	0.0537505	0.184298	0.180803
chr9	128273253	128273349	4358202	0	-	0.447917	(0.44,0.476]	chr9	400433	4	SS3_PROX	SS3_PROX:INTRON	GOLGA2	ENSG00000167110.19	ENST00000421699.8:ENST00000611957.5:ENST00000693185.1:ENST00000686291.1:ENST00000687179.1:ENST00000458730.3:ENST00000693047.1:ENST00000686884.1:ENST00000693180.1:ENST00000691040.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	71	2	1.36075	1.63228	1.90381	0.0389168	0.0260626	0.160783	0.122153
chr15	34390356	34390445	6132783	0	-	0.404494	(0.378,0.408]	chr15	584242	2	INTRON	INTRON	GOLGA8A	ENSG00000175265.18	ENST00000359187.5:ENST00000473125.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	53	2	1.50417	1.6322450000000002	1.76032	0.0721577	0.0384675	0.187433	0.159169
chr1	1860874	1860974	362539	0	-	0.49	(0.476,0.515]	chr1	42311	208	INTRON	INTRON	GNB1	ENSG00000078369.18	ENST00000610897.4:ENST00000615252.4:ENST00000378609.9:ENST00000439272.6:ENST00000434686.6:ENST00000472614.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	47	2	1.58335	1.632135	1.68092	0.0640461	0.0474026	0.177882	0.169265
chr10	42803017	42803117	4428237	0	+	0.51	(0.476,0.515]	chr10	408133	4	INTRON	INTRON	BMS1	ENSG00000165733.8	ENST00000374518.6	protein_coding	protein_coding	protein_coding	protein_coding	6	47	2	1.58335	1.632135	1.68092	0.0640461	0.0474026	0.177882	0.169265
chr4	78869687	78869786	1982335	0	+	0.30303	(0.28,0.32]	chr4	198529	36	INTRON	INTRON	BMP2K	ENSG00000138756.19	ENST00000389010.7:ENST00000502613.3:ENST00000502871.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	91	2	1.26409	1.631985	1.99988	0.0570949	0.0228757	0.186331	0.118056
chr22	49650327	49650427	7602591	0	-	0.38	(0.378,0.408]	chr22	778594	229	INTRON	INTRON	MIR3667HG	ENSG00000188511.13	ENST00000414287.5:ENST00000416411.1:ENST00000689875.1:ENST00000400023.5:ENST00000405854.5	lncRNA	lncRNA	lncRNA	lncRNA	15	116	2	1.56352	1.63172	1.69992	0.0169638	0.0128449	0.104032	0.0990564
chr19	15261751	15261849	7146685	0	-	0.479592	(0.476,0.515]	chr19	721912	16	INTRON	INTRON	BRD4	ENSG00000141867.19	ENST00000679869.1:ENST00000263377.6:ENST00000371835.8:ENST00000360016.9:ENST00000594841.5:ENST00000602230.1:ENST00000678800.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	60	2	1.57103	1.631205	1.69138	0.0481165	0.0307896	0.153019	0.143385
chr8	140995602	140995701	4080022	0	-	0.494949	(0.476,0.515]	chr8	370590	111	INTRON	INTRON	PTK2	ENSG00000169398.20	ENST00000696786.1:ENST00000522684.5:ENST00000395218.3:ENST00000521059.5:ENST00000519993.5:ENST00000340930.7:ENST00000524357.5:ENST00000521791.5:ENST00000523067.5:ENST00000520828.5:ENST00000519881.5:ENST00000520892.5:ENST00000517453.5:ENST00000520045.5:ENST00000521332.5:ENST00000524040.5:ENST00000523679.1:ENST00000524257.5:ENST00000523797.1:ENST00000519635.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	60	2	1.57103	1.631205	1.69138	0.0481165	0.0307896	0.153019	0.143385
chr22	21613282	21613379	7482161	0	+	0.443299	(0.44,0.476]	chr22	763244	19	INTRON	INTRON	UBE2L3	ENSG00000185651.16	ENST00000458578.6:ENST00000545681.2:ENST00000696046.1:ENST00000342192.9:ENST00000496722.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	76	2	1.31461	1.6309200000000001	1.94723	0.0385695	0.0227424	0.159542	0.117618
chr7	103348520	103348600	3373640	0	+	0.3875	(0.378,0.408]	chr7	315779	4	INTRON	INTRON	PSMC2	ENSG00000161057.13	ENST00000678493.1:ENST00000457587.5:ENST00000679205.1:ENST00000679341.1:ENST00000435765.5:ENST00000679250.1:ENST00000679046.1:ENST00000292644.5:ENST00000677281.1:ENST00000425206.6:ENST00000678488.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	83	2	1.62726	1.63092	1.63458	0.0573057	0.0118749	0.167723	0.0962115
chr3	177184884	177184983	1872323	0	-	0.333333	(0.32,0.35]	chr3	187438	136	INTRON	INTRON	TBL1XR1	ENSG00000177565.18	ENST00000457928.7:ENST00000430069.5:ENST00000673974.1:ENST00000352800.10:ENST00000422442.6:ENST00000428970.5:ENST00000424913.5:ENST00000437738.5:ENST00000431421.5:ENST00000635794.1:ENST00000630796.2:ENST00000450267.5:ENST00000630833.2:ENST00000431674.5:ENST00000422066.5:ENST00000443315.5:ENST00000627825.2:ENST00000427349.5:ENST00000413084.5:ENST00000637137.1:ENST00000491623.2:ENST00000637544.1:ENST00000636187.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	14	124	2	1.28315	1.6308449999999999	1.97854	0.0514754	0.00494114	0.158667	0.0646039
chr22	20118413	20118512	7478594	0	+	0.363636	(0.35,0.378]	chr22	762776	1	SS5_PROX	SS5_PROX:INTRON	RANBP1	ENSG00000099901.17	ENST00000435265.5:ENST00000432879.5:ENST00000430524.6:ENST00000402752.5:ENST00000488484.1:ENST00000331821.7:ENST00000411892.5:ENST00000467920.1:ENST00000416427.5:ENST00000421656.5:ENST00000423859.5:ENST00000418705.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	13	108	2	1.57496	1.630815	1.68667	0.0271411	0.0119957	0.123904	0.0962115
chr8	129523874	129523974	4060521	0	-	0.5	(0.476,0.515]	chr8	369648	133	INTRON	INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1:ENST00000676273.1:ENST00000667643.1:ENST00000668791.1:ENST00000663716.1:ENST00000663572.1:ENST00000676148.1:ENST00000667962.1:ENST00000674877.1:ENST00000675316.1:ENST00000674656.1:ENST00000446592.7:ENST00000667341.1:ENST00000675186.1:ENST00000652971.1:ENST00000661447.1:ENST00000674863.1:ENST00000675498.1:ENST00000675527.1:ENST00000676108.1:ENST00000657647.1:ENST00000675589.1:ENST00000675913.1:ENST00000675109.1:ENST00000671632.1:ENST00000671311.1:ENST00000676099.1:ENST00000660652.1:ENST00000675522.1:ENST00000675183.1:ENST00000658861.1:ENST00000663991.1:ENST00000675044.1:ENST00000675435.1:ENST00000674639.1:ENST00000676069.1:ENST00000675532.1:ENST00000674762.1:ENST00000523151.6:ENST00000675948.1:ENST00000665364.1:ENST00000657251.1:ENST00000675166.1:ENST00000674883.1:ENST00000675867.1:ENST00000674580.1:ENST00000675393.1:ENST00000520048.1:ENST00000674906.1:ENST00000676030.1:ENST00000670588.1:ENST00000675072.1:ENST00000664936.1:ENST00000652914.1:ENST00000657069.1	lncRNA	lncRNA	lncRNA	lncRNA	10	73	2	1.29325	1.63079	1.96833	0.0518525	0.0195007	0.159306	0.119967
chrX	103680925	103681024	7856522	0	-	0.40404	(0.378,0.408]	chrX	801086	19	INTRON	INTRON	MORF4L2	ENSG00000123562.18	ENST00000360458.5:ENST00000441076.7:ENST00000433176.6:ENST00000451301.5:ENST00000434230.5:ENST00000418819.5:ENST00000442614.5:ENST00000492116.5:ENST00000422355.5:ENST00000474653.5:ENST00000498064.1:ENST00000467755.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	21	156	2	1.48207	1.6305749999999999	1.77908	0.00982126	0.0097118	0.0875962	0.0838128
chr21	9367941	9368024	7367815	0	+	0.554217	(0.515,0.57]	chr21	751943	3	SS3_PROX	SS3_PROX:INTRON	ENSG00000278932	ENSG00000278932.5	ENST00000622961.3:ENST00000686553.1:ENST00000691955.1:ENST00000692626.1:ENST00000685951.1:ENST00000686510.1:ENST00000692884.1	lncRNA	lncRNA	lncRNA	lncRNA	10	64	2	1.27162	1.63021	1.9888	0.0626162	0.00963364	0.175915	0.086971
chr1	207763952	207764050	305022	0	+	0.27551	[0,0.28]	chr1	35105	8	INTRON	INTRON	CD46	ENSG00000117335.21	ENST00000695779.1:ENST00000695777.1:ENST00000695778.1:ENST00000496723.2:ENST00000695782.1:ENST00000695781.1:ENST00000695780.1:ENST00000636114.2:ENST00000367042.6:ENST00000322875.8:ENST00000322918.9:ENST00000354848.5:ENST00000357714.5:ENST00000358170.6:ENST00000367041.5:ENST00000367047.5:ENST00000695783.1:ENST00000695784.1:ENST00000469535.5:ENST00000360212.6:ENST00000480003.5:ENST00000695785.1:ENST00000464082.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	103	2	1.47169	1.63014	1.78859	0.0479607	0.0307903	0.171039	0.13151
chr6	17652624	17652723	3065659	0	-	0.323232	(0.32,0.35]	chr6	284824	3	INTRON	INTRON	NUP153	ENSG00000124789.12	ENST00000613258.4:ENST00000537253.5:ENST00000262077.3	protein_coding	protein_coding	protein_coding	protein_coding	14	124	2	1.5319	1.630115	1.72833	0.018691	0.0170188	0.117523	0.104099
chr1	51455535	51455635	453709	0	-	0.38	(0.378,0.408]	chr1	54395	70	INTRON	INTRON	EPS15	ENSG00000085832.17	ENST00000371733.8:ENST00000371730.6	protein_coding	protein_coding	protein_coding	protein_coding	22	166	2	1.53116	1.6301100000000002	1.72906	0.00969667	0.00773806	0.0829274	0.0786835
chr20	5610242	5610341	7312338	0	-	0.383838	(0.378,0.408]	chr20	744619	55	INTRON	INTRON	GPCPD1	ENSG00000125772.14	ENST00000379019.7:ENST00000481690.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	85	2	1.61829	1.62999	1.64169	0.0377255	0.0153255	0.14078	0.108569
chr11	9486645	9486745	4730357	0	+	0.44	(0.408,0.44]	chr11	438022	67	INTRON	INTRON	ZNF143	ENSG00000166478.10	ENST00000396604.5:ENST00000530463.5:ENST00000396597.7:ENST00000396602.7:ENST00000299606.6	protein_coding	protein_coding	protein_coding	protein_coding	8	61	2	1.27662	1.62986	1.9831	0.0787183	0.018491	0.198567	0.116694
chr3	119458640	119458740	1791936	0	-	0.54	(0.515,0.57]	chr3	179954	4	SS3_PROX	SS3_PROX:INTRON	TMEM39A	ENSG00000176142.13	ENST00000319172.10:ENST00000438581.6:ENST00000491685.5:ENST00000486159.5:ENST00000486235.5:ENST00000468676.5:ENST00000490099.5:ENST00000497993.5:ENST00000482162.1:ENST00000461654.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	72	2	1.38593	1.629845	1.87376	0.0554883	0.00649501	0.165463	0.0734388
chr3	15038432	15038530	1372703	0	+	0.428571	(0.408,0.44]	chr3	144681	4	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	NR2C2	ENSG00000177463.16	ENST00000425241.6:ENST00000323373.10:ENST00000475707.5:ENST00000393102.7:ENST00000617312.4:ENST00000406272.6:ENST00000478572.1:ENST00000439011.5:ENST00000413194.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	14	104	2	1.60905	1.62976	1.65047	0.02971	0.00868029	0.129022	0.0842798
chr2	112646739	112646828	852065	0	+	0.359551	(0.35,0.378]	chr2	95560	3	UTR5	UTR5:EXON_MRNA	SLC20A1	ENSG00000144136.11	ENST00000272542.8	protein_coding	protein_coding	protein_coding	protein_coding	15	118	2	1.45912	1.629745	1.80037	0.0174738	0.0164949	0.11288	0.102435
chr12	53041219	53041318	5141786	0	+	0.444444	(0.44,0.476]	chr12	485057	11	UTR3	UTR3:EXON_MRNA	EIF4B	ENSG00000063046.18	ENST00000262056.14	protein_coding	protein_coding	protein_coding	protein_coding	17	126	2	1.59237	1.6297350000000002	1.6671	0.0144334	0.00945698	0.0972071	0.0862627
chr1	173935645	173935744	587152	0	-	0.333333	(0.32,0.35]	chr1	70649	47	UTR3	UTR3:EXON_MRNA	RC3H1	ENSG00000135870.12	ENST00000367696.7:ENST00000258349.8	protein_coding	protein_coding	protein_coding	protein_coding	13	116	2	1.30487	1.629725	1.95458	0.0550088	0.00548359	0.165463	0.0671431
chr4	39714560	39714660	1953156	0	+	0.54	(0.515,0.57]	chr4	195630	158	INTRON	INTRON	UBE2K	ENSG00000078140.14	ENST00000510934.5:ENST00000261427.10:ENST00000438068.6:ENST00000513231.5:ENST00000503368.5:ENST00000445950.2:ENST00000510719.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	27	170	2	1.55529	1.629725	1.70416	0.0053968	0.00434857	0.066545000000000007	0.0581091
chr6	34622002	34622102	3085470	0	-	0.36	(0.35,0.378]	chr6	288679	147	INTRON	INTRON	ILRUN	ENSG00000196821.10	ENST00000374026.7:ENST00000374023.8:ENST00000374021.1	protein_coding	protein_coding	protein_coding	protein_coding	6	49	2	1.4414	1.629535	1.81767	0.0640429	0.0629423	0.196658	0.177882
chr1	54382384	54382484	463521	0	-	0.45	(0.44,0.476]	chr1	55784	257	INTRON	INTRON	SSBP3	ENSG00000157216.16	ENST00000610401.5:ENST00000357475.9:ENST00000371319.8:ENST00000417664.7:ENST00000533946.6:ENST00000371320.8:ENST00000525990.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	54	2	1.55662	1.6295199999999999	1.70242	0.0688347	0.0282713	0.184298	0.137721
chr3	9477466	9477564	1359743	0	+	0.428571	(0.408,0.44]	chr3	142827	15	UTR3	UTR3:EXON_MRNA:INTRON	SETD5	ENSG00000168137.20	ENST00000402198.7:ENST00000406341.5:ENST00000407969.5:ENST00000399686.6	protein_coding	protein_coding	protein_coding	protein_coding	32	242	2	1.15637	1.6294199999999999	2.10247	0.0363385	2.89186e-4	0.138959	0.0150944
chr4	165333039	165333139	2079684	0	+	0.26	[0,0.28]	chr4	205561	3	SS3_PROX	SS3_PROX:INTRON	MSMO1	ENSG00000052802.13	ENST00000507013.5:ENST00000261507.11:ENST00000393766.6:ENST00000504317.1:ENST00000505270.1	protein_coding	protein_coding	protein_coding	protein_coding	10	95	2	1.23616	1.629405	2.02265	0.0577295	0.0449017	0.188342	0.149888
chr16	85570349	85570449	6415535	0	+	0.6	(0.57,1]	chr16	615470	136	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	8	32	2	1.57876	1.6293099999999998	1.67986	0.0496395	0.0296165	0.174685	0.128657
chr8	129517885	129517985	4060461	0	-	0.4	(0.378,0.408]	chr8	369648	73	INTRON	INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1:ENST00000676273.1:ENST00000667643.1:ENST00000668791.1:ENST00000663716.1:ENST00000663572.1:ENST00000676148.1:ENST00000667962.1:ENST00000674877.1:ENST00000675316.1:ENST00000674656.1:ENST00000446592.7:ENST00000667341.1:ENST00000675186.1:ENST00000652971.1:ENST00000661447.1:ENST00000674863.1:ENST00000675498.1:ENST00000675527.1:ENST00000676108.1:ENST00000657647.1:ENST00000675589.1:ENST00000675913.1:ENST00000675109.1:ENST00000671632.1:ENST00000671311.1:ENST00000676099.1:ENST00000660652.1:ENST00000675522.1:ENST00000675183.1:ENST00000658861.1:ENST00000663991.1:ENST00000675044.1:ENST00000675435.1:ENST00000674639.1:ENST00000676069.1:ENST00000675532.1:ENST00000674762.1:ENST00000523151.6:ENST00000675948.1:ENST00000665364.1:ENST00000657251.1:ENST00000675166.1:ENST00000674883.1:ENST00000675867.1:ENST00000674580.1:ENST00000675393.1:ENST00000520048.1:ENST00000674906.1:ENST00000676030.1:ENST00000670588.1:ENST00000675072.1:ENST00000664936.1:ENST00000652914.1:ENST00000657069.1	lncRNA	lncRNA	lncRNA	lncRNA	8	65	2	1.6165	1.629095	1.64169	0.0377255	0.0374185	0.155878	0.14078
chr11	85996425	85996525	5014096	0	-	0.27	[0,0.28]	chr11	472948	2	SS5_PROX	SS5_PROX:INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000630913.2:ENST00000529760.5:ENST00000528398.5:ENST00000356360.9:ENST00000529016.5:ENST00000526961.5:ENST00000530542.1	protein_coding	protein_coding	protein_coding	protein_coding	11	124	2	1.52759	1.6290149999999999	1.73044	0.0484383	0.0161924	0.153635	0.109464
chr17	27587111	27587204	6582087	0	+	0.569892	(0.515,0.57]	chr17	639711	1	EXON_LNCRNA	EXON_LNCRNA:INTRON	KSR1	ENSG00000141068.15	ENST00000644974.2:ENST00000398988.7:ENST00000268763.10:ENST00000509603.6:ENST00000644418.1:ENST00000398982.6:ENST00000577823.5:ENST00000581975.5:ENST00000580822.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	43	2	1.38719	1.6289449999999999	1.8707	0.0540435	0.0523213	0.181713	0.160182
chr9	131144851	131144949	4215821	0	+	0.357143	(0.35,0.378]	chr9	386559	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	NUP214	ENSG00000126883.19	ENST00000695497.1:ENST00000695498.1:ENST00000695496.1:ENST00000695495.1:ENST00000695494.1:ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000525561.2:ENST00000651022.1:ENST00000530863.1:ENST00000525980.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	21	168	2	1.47911	1.6289	1.77869	0.0113345	0.00840321	0.0949603	0.0775927
chr1	10061844	10061944	19415	0	+	0.37	(0.35,0.378]	chr1	1838	278	INTRON	INTRON	UBE4B	ENSG00000130939.20	ENST00000672724.1:ENST00000253251.12:ENST00000343090.11:ENST00000377153.5	protein_coding	protein_coding	protein_coding	protein_coding	9	76	2	1.47599	1.6288049999999998	1.78162	0.0425671	0.0251606	0.162011	0.12011
chr5	137752448	137752548	2729000	0	-	0.4	(0.378,0.408]	chr5	256845	69	UTR3	UTR3:EXON_MRNA	HNRNPA0	ENSG00000177733.7	ENST00000314940.7	protein_coding	protein_coding	protein_coding	protein_coding	13	105	2	1.60639	1.6288	1.65121	0.0205731	0.0160595	0.122348	0.101453
chr17	58002818	58002918	6800005	0	-	0.48	(0.476,0.515]	chr17	671424	20	UTR3	UTR3:EXON_MRNA:INTRON	ENSG00000266086:SRSF1	ENSG00000266086.3:ENSG00000136450.13	ENST00000578794.2:ENST00000665125.1:ENST00000258962.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	38	278	2	1.43587	1.62865	1.82143	0.00687173	0.00196623	0.0749442	0.0402171
chr4	55414685	55414783	1960781	0	+	0.306122	(0.28,0.32]	chr4	196561	21	INTRON	INTRON	TMEM165	ENSG00000134851.13	ENST00000381334.10:ENST00000506198.5:ENST00000508404.5:ENST00000511710.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	15	146	2	1.43487	1.628595	1.82232	0.0467227	0.00504065	0.151745	0.0646039
chr4	70910045	70910144	1970582	0	+	0.494949	(0.476,0.515]	chr4	197571	71	INTRON	INTRON	MOB1B	ENSG00000173542.9	ENST00000502869.5:ENST00000509041.5:ENST00000309395.7:ENST00000396051.2:ENST00000511449.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	12	88	2	1.62493	1.6284	1.63187	0.037661	0.0118751	0.14058	0.0962115
chr19	54212045	54212145	7098949	0	+	0.42	(0.408,0.44]	chr19	711952	45	INTRON	INTRON	RPS9	ENSG00000170889.14	ENST00000448962.5	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	6	47	2	1.40374	1.628395	1.85305	0.0721345	0.0543543	0.187433	0.182243
chr17	62050144	62050244	6810729	0	-	0.47	(0.44,0.476]	chr17	672946	142	INTRON	INTRON	MED13	ENSG00000108510.10	ENST00000397786.7	protein_coding	protein_coding	protein_coding	protein_coding	16	123	2	1.34977	1.6283400000000001	1.90691	0.0522828	0.00207463	0.160182	0.0423008
chr17	22095704	22095804	6578620	0	+	0.31	(0.28,0.32]	chr17	639556	44	INTRON	INTRON	UBBP4	ENSG00000263563.7	ENST00000648259.1:ENST00000688301.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	15	130	2	1.14578	1.62813	2.11048	0.0534817	0.00956764	0.180041	0.0820838
chr2	96882177	96882277	1182046	0	-	0.58	(0.57,1]	chr2	126720	33	INTRON	INTRON	FAM178B	ENSG00000168754.15	ENST00000393526.6:ENST00000490605.3:ENST00000470789.5:ENST00000494172.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	31	2	1.2666	1.6280649999999999	1.98953	0.0788045	0.0182848	0.198736	0.115629
chr22	21515144	21515243	7560243	0	-	0.585859	(0.57,1]	chr22	773322	10	INTRON	INTRON	PI4KAP2	ENSG00000183506.17	ENST00000450651.5:ENST00000479693.1:ENST00000476537.1	transcribed_unitary_pseudogene	retained_intron	transcribed_unitary_pseudogene	retained_intron:processed_transcript	8	31	2	1.2666	1.6280649999999999	1.98953	0.0788045	0.0182848	0.198736	0.115629
chr7	87152869	87152944	3345620	0	+	0.68	(0.57,1]	chr7	311611	2	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	DMTF1	ENSG00000135164.19	ENST00000413276.6:ENST00000447863.5:ENST00000579677.5:ENST00000425406.5:ENST00000446796.6:ENST00000420131.5:ENST00000414630.6:ENST00000547146.6:ENST00000579850.5:ENST00000453049.5:ENST00000331242.12:ENST00000430405.7:ENST00000449088.7:ENST00000448598.5:ENST00000428819.5:ENST00000432937.6:ENST00000584619.5:ENST00000432366.6:ENST00000423590.6:ENST00000394703.9:ENST00000584457.5:ENST00000580710.5:ENST00000579592.5:ENST00000434534.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	31	2	1.2666	1.6280649999999999	1.98953	0.0788045	0.0182848	0.198736	0.115629
chr1	155314267	155314366	229214	0	+	0.545455	(0.515,0.57]	chr1	26854	14	INTRON	INTRON	FDPS	ENSG00000160752.15	ENST00000611010.4:ENST00000468479.5:ENST00000447866.5:ENST00000461507.5:ENST00000474345.5:ENST00000471117.5:ENST00000368356.9:ENST00000467076.5:ENST00000495308.5:ENST00000491013.5:ENST00000356657.10:ENST00000465559.5:ENST00000470171.5:ENST00000612683.1:ENST00000489003.5:ENST00000477057.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	39	227	2	1.21924	1.62803	2.03682	0.0141177	7.47703e-4	0.103349	0.0251179
chr2	86132612	86132706	822657	0	+	0.287234	(0.28,0.32]	chr2	91824	3	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PTCD3	ENSG00000132300.19	ENST00000254630.12:ENST00000464541.5:ENST00000476215.5:ENST00000487043.5:ENST00000469585.5:ENST00000493430.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	16	145	2	1.18839	1.62794	2.06749	0.0464835	0.00743065	0.166828	0.0745754
chr17	47169416	47169516	6789193	0	-	0.49	(0.476,0.515]	chr17	669622	1	SS5_PROX	SS5_PROX:INTRON	CDC27	ENSG00000004897.12	ENST00000066544.8:ENST00000531206.5:ENST00000533415.5:ENST00000527547.5:ENST00000526866.5:ENST00000525495.6:ENST00000574304.5:ENST00000573550.5:ENST00000570818.5:ENST00000575483.5:ENST00000532893.5:ENST00000528748.5:ENST00000532575.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	76	2	1.44826	1.6279050000000002	1.80755	0.0482164	0.0131326	0.153146	0.0999551
chr3	155877861	155877961	1537199	0	+	0.49	(0.476,0.515]	chr3	160082	66	INTRON	INTRON	GMPS	ENSG00000163655.16	ENST00000496455.7:ENST00000295920.7	protein_coding	protein_coding	protein_coding	protein_coding	10	76	2	1.44826	1.6279050000000002	1.80755	0.0482164	0.0131326	0.153146	0.0999551
chr2	32182079	32182178	729942	0	+	0.474747	(0.44,0.476]	chr2	84166	41	INTRON	INTRON	SLC30A6	ENSG00000152683.14	ENST00000357055.7:ENST00000435660.5:ENST00000282587.9:ENST00000449777.5:ENST00000454324.5:ENST00000379343.6:ENST00000440718.5:ENST00000406369.2:ENST00000457724.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	47	2	1.49942	1.627845	1.75627	0.0792118	0.0380723	0.199574	0.157702
chr4	126615791	126615891	2236867	0	-	0.39	(0.378,0.408]	chr4	219023	1503	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	11	87	2	1.51701	1.6278000000000001	1.73859	0.0404516	0.0123927	0.144865	0.0973643
chr16	217953	218053	6426073	0	-	0.44	(0.408,0.44]	chr16	617437	83	INTRON	INTRON	LUC7L	ENSG00000007392.17	ENST00000337351.8:ENST00000426094.5:ENST00000397783.5:ENST00000629543.2:ENST00000490762.5:ENST00000293872.13:ENST00000419516.5:ENST00000397780.5:ENST00000418978.5:ENST00000430864.5:ENST00000443357.5:ENST00000494366.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	25	189	2	1.23078	1.62778	2.02478	0.0347891	7.40308e-4	0.137346	0.0248878
chr7	148816318	148816409	3670066	0	-	0.351648	(0.35,0.378]	chr7	340565	5	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	EZH2	ENSG00000106462.12	ENST00000683292.1:ENST00000320356.7:ENST00000492143.5:ENST00000478654.5:ENST00000350995.6:ENST00000460911.5:ENST00000684400.1:ENST00000683744.1:ENST00000684510.1:ENST00000682317.1:ENST00000683293.1:ENST00000682263.1:ENST00000684300.1:ENST00000476773.5:ENST00000483967.5:ENST00000684436.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	59	2	1.6122	1.627515	1.64283	0.0616849	0.034896	0.174021	0.148998
chr16	8100922	8101022	6441518	0	-	0.5	(0.476,0.515]	chr16	620351	933	INTRON	INTRON	ENSG00000260289	ENSG00000260289.2	ENST00000670665.1:ENST00000654046.1:ENST00000567103.2	lncRNA	lncRNA	lncRNA	lncRNA	14	105	2	1.46162	1.6275149999999998	1.79341	0.0252577	0.009837	0.12011	0.0877296
chr3	172792851	172792950	1563653	0	+	0.484848	(0.476,0.515]	chr3	161807	59	INTRON	INTRON	ECT2	ENSG00000114346.14	ENST00000232458.9:ENST00000540509.5:ENST00000392692.8:ENST00000417960.5:ENST00000441497.6	protein_coding	protein_coding	protein_coding	protein_coding	13	99	2	1.34326	1.6274	1.91154	0.0529391	0.0043021	0.161923	0.0599409
chr5	72910608	72910707	2388099	0	+	0.343434	(0.32,0.35]	chr5	230509	20	UTR3	UTR3:EXON_MRNA	TNPO1	ENSG00000083312.19	ENST00000680533.1:ENST00000337273.10:ENST00000680025.1:ENST00000681711.1:ENST00000679378.1:ENST00000680111.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	71	2	1.60297	1.62738	1.65179	0.0647328	0.0245569	0.179192	0.131869
chr1	245896350	245896449	674587	0	-	0.30303	(0.28,0.32]	chr1	79681	321	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000366517.5:ENST00000366516.5:ENST00000490107.6:ENST00000470510.5:ENST00000493441.5:ENST00000488153.5:ENST00000492487.5:ENST00000391836.3:ENST00000464398.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	61	2	1.61031	1.6273149999999998	1.64432	0.0606133	0.0600513	0.190658	0.171142
chr19	52649648	52649748	7206720	0	-	0.32	(0.28,0.32]	chr19	731394	114	INTRON	INTRON	ZNF83	ENSG00000167766.20	ENST00000600714.5:ENST00000601257.5:ENST00000594682.6:ENST00000687234.1:ENST00000598536.5:ENST00000595171.5:ENST00000596440.5:ENST00000602232.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	61	2	1.61031	1.6273149999999998	1.64432	0.0606133	0.0600513	0.190658	0.171142
chr8	85218799	85218893	3980196	0	-	0.297872	(0.28,0.32]	chr8	364736	2	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	RBIS	ENSG00000176731.12	ENST00000619594.5:ENST00000614462.4:ENST00000612977.4:ENST00000545322.5:ENST00000612809.4:ENST00000615697.4:ENST00000523281.5:ENST00000523245.1:ENST00000321777.5:ENST00000518786.1:ENST00000521286.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	61	2	1.61031	1.6273149999999998	1.64432	0.0606133	0.0600513	0.190658	0.171142
chr6	20423625	20423725	2827665	0	+	0.51	(0.476,0.515]	chr6	265575	194	INTRON	INTRON	E2F3	ENSG00000112242.16	ENST00000346618.8:ENST00000535432.2	protein_coding	protein_coding	protein_coding	protein_coding	6	47	2	1.61586	1.6271200000000001	1.63838	0.0567093	0.0555021	0.185107	0.165463
chr5	53591881	53591981	2352803	0	+	0.4	(0.378,0.408]	chr5	226995	178	INTRON	INTRON	NDUFS4	ENSG00000164258.12	ENST00000507026.5:ENST00000502423.5:ENST00000296684.10:ENST00000506974.5:ENST00000506765.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	81	2	1.54765	1.62709	1.70653	0.0334147	0.0219966	0.146709	0.115395
chr6	49609556	49609653	3105179	0	-	0.350515	(0.35,0.378]	chr6	290636	20	INTRON	INTRON	RHAG	ENSG00000112077.18	ENST00000371175.10:ENST00000646272.1:ENST00000646939.1:ENST00000646963.1	protein_coding	protein_coding	protein_coding	protein_coding	27	214	2	1.52469	1.6269900000000002	1.72929	0.0073761	0.00651035	0.0741683	0.0735232
chrX	44890486	44890586	7648775	0	+	0.38	(0.378,0.408]	chrX	782726	161	INTRON	INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000675440.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000621147.5:ENST00000475233.1:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	88	2	1.15185	1.6269850000000001	2.10212	0.0527814	0.0141232	0.178798	0.0959618
chr17	29416990	29417090	6585902	0	+	0.43	(0.408,0.44]	chr17	640377	130	INTRON	INTRON	TAOK1	ENSG00000160551.12	ENST00000261716.8:ENST00000583121.5:ENST00000587277.1:ENST00000536202.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	45	2	1.43792	1.62682	1.81572	0.062843	0.0626779	0.196433	0.175915
chr18	9481135	9481235	6871190	0	+	0.42	(0.408,0.44]	chr18	680716	13	INTRON	INTRON	RALBP1	ENSG00000017797.13	ENST00000019317.8:ENST00000585015.6:ENST00000383432.8:ENST00000609094.2:ENST00000458039.3:ENST00000577221.1	protein_coding	protein_coding	protein_coding	protein_coding	6	45	2	1.43792	1.62682	1.81572	0.062843	0.0626779	0.196433	0.175915
chr2	28788809	28788909	725027	0	+	0.41	(0.408,0.44]	chr2	83755	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	PPP1CB	ENSG00000213639.10	ENST00000358506.6:ENST00000296122.10:ENST00000395366.3	protein_coding	protein_coding	protein_coding	protein_coding	6	45	2	1.43792	1.62682	1.81572	0.062843	0.0626779	0.196433	0.175915
chr16	24756849	24756948	6329486	0	+	0.30303	(0.28,0.32]	chr16	605939	57	INTRON	INTRON	TNRC6A	ENSG00000090905.19	ENST00000395799.8:ENST00000315183.11:ENST00000562829.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	104	2	1.43837	1.626645	1.81492	0.0328251	0.0253829	0.145164	0.12011
chr16	85557562	85557662	6415407	0	+	0.51	(0.476,0.515]	chr16	615470	8	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	46	343	2	1.47113	1.626565	1.782	0.00522446	0.00158107	0.0656295	0.0362633
chr6	147242562	147242662	2989091	0	+	0.28	[0,0.28]	chr6	280013	29	INTRON	INTRON	STXBP5	ENSG00000164506.15	ENST00000321680.11:ENST00000367481.7:ENST00000546097.5:ENST00000367480.7	protein_coding	protein_coding	protein_coding	protein_coding	6	70	2	1.62313	1.62652	1.62991	0.0671202	0.0605286	0.191883	0.183051
chr1	39848597	39848689	427915	0	-	0.478261	(0.476,0.515]	chr1	51994	1	INTRON	INTRON	TRIT1	ENSG00000043514.17	ENST00000316891.10:ENST00000648678.1:ENST00000537440.5:ENST00000372818.5:ENST00000462797.5:ENST00000441669.6:ENST00000495175.6:ENST00000491865.5:ENST00000541099.5:ENST00000492612.6:ENST00000489945.5:ENST00000486825.6:ENST00000469476.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	14	106	2	1.58148	1.62642	1.67136	0.0175606	0.0139888	0.11319	0.0959618
chr3	123914293	123914390	1803688	0	-	0.28866000000000003	(0.28,0.32]	chr3	181219	10	UTR3	UTR3:EXON_MRNA:INTRON	CCDC14	ENSG00000175455.16	ENST00000463996.1:ENST00000479903.5:ENST00000409697.8:ENST00000488653.6:ENST00000485727.5:ENST00000495381.5:ENST00000409657.5:ENST00000489746.5:ENST00000433542.7:ENST00000310351.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	104	2	1.41075	1.626375	1.842	0.0359835	0.023346	0.152355	0.118323
chr2	197500337	197500436	968512	0	+	0.606061	(0.57,1]	chr2	104778	3	UTR5	UTR5:EXON_MRNA	HSPE1:HSPE1-MOB4	ENSG00000115541.11:ENSG00000270757.1	ENST00000409729.1:ENST00000473395.1:ENST00000233893.10:ENST00000409468.1:ENST00000604458.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	16	61	2	1.41857	1.6263450000000002	1.83412	0.0214217	0.0052386	0.123836	0.0633615
chr10	63376135	63376234	4634492	0	-	0.393939	(0.378,0.408]	chr10	426230	27	INTRON	INTRON	JMJD1C	ENSG00000171988.20	ENST00000399262.7:ENST00000633035.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	52	2	1.36527	1.62628	1.88729	0.0587392	0.0532327	0.189982	0.162538
chr2	61478442	61478536	1130583	0	-	0.255319	[0,0.28]	chr2	121505	9	UTR3	UTR3:EXON_MRNA	XPO1	ENSG00000082898.19	ENST00000677110.1:ENST00000678113.1:ENST00000676553.1:ENST00000677556.1:ENST00000677814.1:ENST00000676771.1:ENST00000677803.1:ENST00000677239.1:ENST00000678790.1:ENST00000677928.1:ENST00000678182.1:ENST00000677150.1:ENST00000678172.1:ENST00000678360.1:ENST00000678081.1:ENST00000676889.1:ENST00000676783.1:ENST00000679035.1:ENST00000677422.1:ENST00000677417.1:ENST00000677813.1:ENST00000676999.1:ENST00000676667.1:ENST00000678263.1:ENST00000678877.1:ENST00000677933.1:ENST00000680228.1:ENST00000677289.1:ENST00000677190.1:ENST00000481073.6:ENST00000677476.1:ENST00000469337.2:ENST00000401558.7:ENST00000428210.5:ENST00000677290.1:ENST00000677850.1:ENST00000678640.1:ENST00000676778.1:ENST00000451765.6:ENST00000676789.1:ENST00000678741.1:ENST00000404992.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	20	219	2	1.48917	1.62627	1.76337	0.0159751	0.0134194	0.109464	0.0946278
chr5	178210803	178210893	2559473	0	+	0.566667	(0.515,0.57]	chr5	244660	3	UTR3	UTR3:EXON_MRNA	HNRNPAB	ENSG00000197451.12	ENST00000358344.8:ENST00000506339.5:ENST00000355836.9:ENST00000514633.5:ENST00000515193.5:ENST00000506259.5:ENST00000504898.5	protein_coding	protein_coding	protein_coding	protein_coding	37	257	2	1.2123	1.62622	2.04014	0.0229027	2.74601e-4	0.12581	0.0151818
chr21	10339913	10340013	7427420	0	-	0.37	(0.35,0.378]	chr21	757676	1	SS5_PROX	SS5_PROX:INTRON	ENSG00000277693	ENSG00000277693.2	ENST00000622592.1:ENST00000616952.1:ENST00000667012.1	lncRNA	lncRNA	lncRNA	lncRNA	12	101	2	1.60176	1.6261700000000001	1.65058	0.0213692	0.0209998	0.123719	0.112251
chr6	28904169	28904254	3075391	0	-	0.541176	(0.515,0.57]	chr6	285921	1	CDS	CDS:UTR3:EXON_MRNA	TRIM27	ENSG00000204713.11	ENST00000377194.7:ENST00000377199.4:ENST00000481474.5:ENST00000414543.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	46	2	1.56681	1.6261649999999999	1.68552	0.064862	0.0292028	0.179394	0.141637
chr9	37134937	37135037	4117802	0	+	0.59	(0.57,1]	chr9	375372	76	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000322831.6:ENST00000461038.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	32	2	1.52818	1.62612	1.72406	0.0508101	0.0261443	0.175989	0.122221
chr6	44248431	44248516	2872843	0	+	0.411765	(0.408,0.44]	chr6	272580	4	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HSP90AB1	ENSG00000096384.20	ENST00000620073.4:ENST00000353801.7:ENST00000371646.10:ENST00000371554.2	protein_coding	protein_coding	protein_coding	protein_coding	30	240	2	1.57197	1.626055	1.68014	0.0103385	0.00322468	0.0895542	0.0507087
chr9	98067671	98067770	4173487	0	+	0.373737	(0.35,0.378]	chr9	380322	63	INTRON	INTRON	NANS	ENSG00000095380.11	ENST00000210444.6:ENST00000495319.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	59	2	1.56287	1.625975	1.68908	0.0697648	0.0301354	0.184298	0.142482
chrX	111696156	111696255	7702168	0	+	0.353535	(0.35,0.378]	chrX	788221	61	INTRON	INTRON	ALG13	ENSG00000101901.12	ENST00000487141.5:ENST00000394780.8:ENST00000251943.8:ENST00000610588.4:ENST00000621367.4:ENST00000622997.3:ENST00000624161.3:ENST00000636363.1:ENST00000624881.3:ENST00000495283.5:ENST00000486353.5:ENST00000623144.3:ENST00000470971.5:ENST00000623148.3:ENST00000471924.5:ENST00000436609.5:ENST00000470704.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	59	2	1.56287	1.625975	1.68908	0.0697648	0.0301354	0.184298	0.142482
chr10	124784850	124784949	4712477	0	-	0.414141	(0.408,0.44]	chr10	434817	97	INTRON	INTRON	EEF1AKMT2	ENSG00000203791.15	ENST00000652548.1:ENST00000466270.5:ENST00000368836.7:ENST00000464099.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	60	2	1.24904	1.6256599999999999	2.00228	0.055886	0.0389732	0.18407	0.143072
chr14	102624814	102624913	5822855	0	+	0.494949	(0.476,0.515]	chr14	552490	311	INTRON	INTRON	RCOR1	ENSG00000089902.10	ENST00000262241.7	protein_coding	protein_coding	protein_coding	protein_coding	19	138	2	1.29129	1.6255899999999999	1.95989	0.029411	0.00342631	0.128055	0.0539802
chr17	82575061	82575161	6693165	0	+	0.38	(0.378,0.408]	chr17	654652	28	INTRON	INTRON	FOXK2	ENSG00000141568.21	ENST00000473637.6:ENST00000335255.10:ENST00000531030.5:ENST00000526383.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	49	2	1.53052	1.625485	1.72045	0.0744544	0.0424671	0.192012	0.161763
chr3	37250707	37250800	1395827	0	+	0.419355	(0.408,0.44]	chr3	146312	1	SS5_PROX	SS5_PROX:INTRON	GOLGA4	ENSG00000144674.17	ENST00000435830.6:ENST00000444882.5:ENST00000356847.8:ENST00000450863.6:ENST00000361924.7:ENST00000429018.5:ENST00000431105.1:ENST00000419177.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	19	134	2	1.37212	1.6254849999999998	1.87885	0.0169724	0.00827079	0.110899	0.0774402
chr4	174318955	174319053	2082946	0	+	0.44898	(0.44,0.476]	chr4	205864	17	UTR3	UTR3:EXON_MRNA:INTRON	CEP44	ENSG00000164118.13	ENST00000457424.6:ENST00000396791.7:ENST00000503780.6:ENST00000426172.3:ENST00000296519.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	19	141	2	1.54969	1.625375	1.70106	0.0185226	0.00488098	0.108861	0.0640618
chr2	74201479	74201577	813256	0	+	0.44898	(0.44,0.476]	chr2	90925	1	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	MTHFD2	ENSG00000065911.13	ENST00000677997.1:ENST00000677170.1:ENST00000678684.1:ENST00000409804.5:ENST00000489041.2:ENST00000470592.5:ENST00000678955.1:ENST00000394053.7:ENST00000677377.1:ENST00000679055.1:ENST00000678340.1:ENST00000477455.5:ENST00000409601.1:ENST00000678228.1:ENST00000488086.1:ENST00000462026.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	47	2	1.55662	1.6253199999999999	1.69402	0.0688347	0.0456129	0.184298	0.164236
chr2	61478630	61478724	1130585	0	-	0.287234	(0.28,0.32]	chr2	121505	11	UTR3	UTR3:EXON_MRNA	XPO1	ENSG00000082898.19	ENST00000677110.1:ENST00000678113.1:ENST00000676553.1:ENST00000677556.1:ENST00000677814.1:ENST00000676771.1:ENST00000677803.1:ENST00000677239.1:ENST00000678790.1:ENST00000677928.1:ENST00000678182.1:ENST00000677150.1:ENST00000678172.1:ENST00000678360.1:ENST00000678081.1:ENST00000676889.1:ENST00000676783.1:ENST00000679035.1:ENST00000677422.1:ENST00000677417.1:ENST00000677813.1:ENST00000676999.1:ENST00000676667.1:ENST00000678263.1:ENST00000678877.1:ENST00000677933.1:ENST00000680228.1:ENST00000677289.1:ENST00000677190.1:ENST00000481073.6:ENST00000677476.1:ENST00000469337.2:ENST00000401558.7:ENST00000428210.5:ENST00000677290.1:ENST00000677850.1:ENST00000678640.1:ENST00000676778.1:ENST00000451765.6:ENST00000676789.1:ENST00000678741.1:ENST00000404992.6:ENST00000406957.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	30	267	2	1.40516	1.6252499999999999	1.84534	0.0109065	0.00680138	0.0923273	0.071184
chrX	13314088	13314188	7622191	0	+	0.42	(0.408,0.44]	chrX	780272	2	SS3_PROX	SS3_PROX:INTRON	GS1-600G8.3	ENSG00000231216.1	ENST00000431486.1	lncRNA	lncRNA	lncRNA	lncRNA	16	121	2	1.42529	1.625185	1.82508	0.0254657	0.0063277	0.12011	0.0722266
chr5	139276748	139276846	2499199	0	+	0.397959	(0.378,0.408]	chr5	238870	2	INTRON	INTRON	MATR3:SNHG4	ENSG00000280987.4:ENSG00000281398.4	ENST00000509990.5:ENST00000506147.5:ENST00000512107.5:ENST00000648842.1:ENST00000448190.6:ENST00000361059.7:ENST00000506188.5:ENST00000507692.5:ENST00000394800.6:ENST00000502929.5:ENST00000504203.5:ENST00000514694.5:ENST00000513259.5:ENST00000507197.5:ENST00000509644.5:ENST00000505016.2:ENST00000505522.6:ENST00000514110.5:ENST00000508735.5:ENST00000502394.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	12	87	2	1.1099	1.625095	2.14029	0.072771	0.0106742	0.188931	0.0917199
chr2	9541557	9541657	1064347	0	-	0.32	(0.28,0.32]	chr2	113546	36	INTRON	INTRON	ADAM17	ENSG00000151694.14	ENST00000310823.8:ENST00000648548.1:ENST00000649227.1:ENST00000648857.1:ENST00000647979.1:ENST00000647610.1:ENST00000650116.1:ENST00000647622.1:ENST00000649972.1:ENST00000650241.1:ENST00000618923.2:ENST00000478059.1:ENST00000648002.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	98	2	1.4428	1.62504	1.80728	0.0712927	0.0108259	0.185716	0.0920575
chr12	6499222	6499322	5069271	0	+	0.5	(0.476,0.515]	chr12	478656	36	INTRON	INTRON	NCAPD2	ENSG00000010292.13	ENST00000541399.1:ENST00000539714.5:ENST00000382457.8:ENST00000539084.5:ENST00000315579.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	10	64	2	1.19824	1.6248900000000002	2.05154	0.0568052	0.0336015	0.185406	0.134145
chr2	17751291	17751390	1074082	0	-	0.50505	(0.476,0.515]	chr2	114655	50	INTRON	INTRON	SMC6	ENSG00000163029.16	ENST00000351948.8:ENST00000448223.7:ENST00000402989.5:ENST00000446852.5:ENST00000621152.4:ENST00000428868.1	protein_coding	protein_coding	protein_coding	protein_coding	9	70	2	1.58842	1.62481	1.6612	0.0406588	0.0245383	0.161534	0.12011
chr7	132956827	132956927	3644631	0	-	0.4	(0.378,0.408]	chr7	338848	695	INTRON	INTRON	CHCHD3	ENSG00000106554.13	ENST00000262570.10:ENST00000448878.6:ENST00000496427.5:ENST00000423635.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	56	2	1.58349	1.6247150000000001	1.66594	0.0653091	0.0320222	0.180158	0.144995
chr10	31901482	31901582	4590047	0	-	0.34	(0.32,0.35]	chr10	423163	395	INTRON	INTRON	ARHGAP12	ENSG00000165322.18	ENST00000344936.7:ENST00000375245.8:ENST00000396144.8:ENST00000375250.9:ENST00000311380.8	protein_coding	protein_coding	protein_coding	protein_coding	21	191	2	1.30487	1.62469	1.94451	0.0550088	0.00111789	0.165463	0.030702
chr3	194419878	194419967	1890495	0	-	0.269663	[0,0.28]	chr3	189105	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	ATP13A3	ENSG00000133657.17	ENST00000687055.1:ENST00000645538.1:ENST00000645319.2:ENST00000690810.1:ENST00000429136.7:ENST00000645621.1:ENST00000461660.2:ENST00000685123.1:ENST00000642744.2:ENST00000439040.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	24	267	2	1.41052	1.62463	1.83874	0.0315336	0.0032671	0.13151	0.0525826
chr10	49969042	49969142	4432902	0	+	0.35	(0.32,0.35]	chr10	408699	102	INTRON	INTRON	TIMM23B:TIMM23B-AGAP6	ENSG00000204152.14:ENSG00000178440.8	ENST00000478381.5:ENST00000651259.3:ENST00000651763.1:ENST00000651208.1:ENST00000652716.1:ENST00000483296.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	13	116	2	1.44744	1.6246200000000002	1.8018	0.0356123	0.0103524	0.138061	0.0896588
chr3	10002016	10002116	1362122	0	+	0.4	(0.378,0.408]	chr3	143402	78	INTRON	INTRON	EMC3-AS1	ENSG00000180385.9	ENST00000692142.1:ENST00000366264.6:ENST00000693066.1:ENST00000326237.3:ENST00000440568.1:ENST00000424904.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	7	56	2	1.5653	1.624615	1.68393	0.0503034	0.043739	0.162255	0.156383
chr22	23187213	23187313	7483270	0	+	0.27	[0,0.28]	chr22	763531	46	INTRON	INTRON	BCR	ENSG00000186716.21	ENST00000479188.5:ENST00000359540.7:ENST00000305877.13	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	16	176	2	1.28905	1.62456	1.96007	0.0494434	0.00678267	0.156286	0.0743228
chr17	44176161	44176258	6778919	0	-	0.463918	(0.44,0.476]	chr17	668261	3	EXON_LNCRNA	EXON_LNCRNA	ASB16-AS1	ENSG00000267080.7	ENST00000588785.6:ENST00000585457.6:ENST00000618557.1:ENST00000591166.1:ENST00000667684.1:ENST00000669052.1:ENST00000656516.1	lncRNA	lncRNA	lncRNA	lncRNA	7	54	2	1.43625	1.62454	1.81283	0.063142	0.0343005	0.197183	0.135641
chr10	78038664	78038760	4475929	0	+	0.5625	(0.515,0.57]	chr10	411990	8	EXON_MRNA	EXON_MRNA:INTRON	RPS24	ENSG00000138326.21	ENST00000613865.5:ENST00000435275.5:ENST00000645440.1:ENST00000440692.6:ENST00000360830.9:ENST00000372360.9:ENST00000464716.6:ENST00000645698.1:ENST00000476545.6:ENST00000465692.2:ENST00000482069.5:ENST00000645195.1:ENST00000480662.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	18	115	2	1.61969	1.624525	1.62936	0.00983501	0.00921295	0.0855292	0.0838128
chr16	24824097	24824194	6330196	0	+	0.43299	(0.408,0.44]	chr16	606061	4	UTR3	UTR3:EXON_MRNA:INTRON	TNRC6A	ENSG00000090905.19	ENST00000395799.8:ENST00000315183.11:ENST00000491718.5:ENST00000450465.6:ENST00000569098.1:ENST00000464539.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	70	2	1.40381	1.624485	1.84516	0.0521927	0.0193431	0.177259	0.108861
chr8	26343945	26344045	3716626	0	+	0.53	(0.515,0.57]	chr8	345395	36	INTRON	INTRON	PPP2R2A	ENSG00000221914.11	ENST00000380737.8:ENST00000520329.5:ENST00000518254.5:ENST00000524169.5:ENST00000518397.5:ENST00000522535.5:ENST00000665949.1:ENST00000521095.5:ENST00000660435.1:ENST00000523925.5:ENST00000524099.5:ENST00000315985.7:ENST00000519636.5:ENST00000522482.5:ENST00000521557.5:ENST00000519439.5:ENST00000521484.5:ENST00000523964.5:ENST00000667651.1:ENST00000657943.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	51	2	1.32981	1.624485	1.91916	0.0640038	0.0231902	0.199279	0.118148
chrX	74588451	74588551	7841683	0	-	0.31	(0.28,0.32]	chrX	799768	56	UTR3	UTR3:EXON_MRNA	RLIM	ENSG00000131263.13	ENST00000332687.11	protein_coding	protein_coding	protein_coding	protein_coding	40	383	2	1.48888	1.62433	1.75978	0.0124799	0.00196472	0.0923444	0.0411469
chr10	67893543	67893643	4440491	0	+	0.47	(0.44,0.476]	chr10	409441	16	INTRON	INTRON	SIRT1	ENSG00000096717.12	ENST00000212015.11:ENST00000432464.5:ENST00000473922.1:ENST00000406900.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	86	2	1.24699	1.62432	2.00165	0.0484245	0.0109867	0.172383	0.0873897
chr17	78215665	78215765	6682184	0	+	0.36	(0.35,0.378]	chr17	652748	3	SS3_PROX	SS3_PROX:INTRON	BIRC5	ENSG00000089685.15	ENST00000301633.8:ENST00000350051.8:ENST00000590925.6:ENST00000374948.6:ENST00000592734.5:ENST00000592115.5:ENST00000586192.5:ENST00000587746.5:ENST00000591800.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	52	2	1.58862	1.62426	1.6599	0.0615516	0.0545616	0.193423	0.165292
chr1	202728742	202728840	619905	0	-	0.377551	(0.35,0.378]	chr1	73525	24	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	KDM5B	ENSG00000117139.18	ENST00000367265.9:ENST00000648676.1:ENST00000648338.1:ENST00000472822.6:ENST00000649339.1:ENST00000649542.1:ENST00000647757.1:ENST00000649400.1:ENST00000647747.1:ENST00000367264.7:ENST00000648473.1:ENST00000650569.1:ENST00000648056.1:ENST00000649230.1:ENST00000650506.1:ENST00000649770.1:ENST00000491153.2:ENST00000648469.1:ENST00000498276.2:ENST00000650417.1:ENST00000647657.1:ENST00000649089.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	12	99	2	1.422	1.62424	1.82648	0.032366	0.0150408	0.145026	0.0994339
chr20	35738767	35738867	7336522	0	-	0.34	(0.32,0.35]	chr20	747496	4	SS5_PROX	SS5_PROX:INTRON	RBM39	ENSG00000131051.24	ENST00000253363.11:ENST00000639702.1:ENST00000656873.1:ENST00000463004.5:ENST00000361162.10:ENST00000461283.5:ENST00000403542.6:ENST00000338163.10:ENST00000528062.7:ENST00000429968.5:ENST00000444878.5:ENST00000665058.1:ENST00000374038.7:ENST00000412738.5:ENST00000434927.5:ENST00000425184.5:ENST00000481037.5:ENST00000455343.5:ENST00000416108.5:ENST00000426951.5:ENST00000477334.1:ENST00000442447.5:ENST00000449489.5:ENST00000433027.5:ENST00000487604.1:ENST00000453310.5:ENST00000416529.5:ENST00000397370.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	32	234	2	1.04396	1.6242299999999998	2.2045	0.0392939	0.00191651	0.161534	0.0395738
chr17	62040587	62040687	6810633	0	-	0.37	(0.35,0.378]	chr17	672946	46	INTRON	INTRON	MED13	ENSG00000108510.10	ENST00000397786.7	protein_coding	protein_coding	protein_coding	protein_coding	15	106	2	1.33117	1.624115	1.91706	0.026412	0.0231568	0.127017	0.122506
chr8	56072497	56072595	3954728	0	-	0.438776	(0.408,0.44]	chr8	362719	28	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	RPS20	ENSG00000008988.11	ENST00000618656.2:ENST00000676461.1:ENST00000519807.5:ENST00000678039.1:ENST00000676918.1:ENST00000678683.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	22	156	2	1.31818	1.6240999999999999	1.93002	0.022095	0.0176536	0.123903	0.105233
chr14	30958223	30958322	5857190	0	-	0.50505	(0.476,0.515]	chr14	556504	16	INTRON	INTRON	STRN3	ENSG00000196792.12	ENST00000355683.9:ENST00000357479.10:ENST00000555358.5:ENST00000555152.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	18	127	2	1.05269	1.62405	2.19541	0.0663996	0.00155426	0.182357	0.0364504
chr6	156979817	156979917	3009189	0	+	0.43	(0.408,0.44]	chr6	281124	361	INTRON	INTRON	ARID1B	ENSG00000049618.24	ENST00000346085.10:ENST00000636930.2:ENST00000647938.1:ENST00000350026.10:ENST00000674298.1:ENST00000674190.1:ENST00000414678.7:ENST00000638000.1:ENST00000319584.11:ENST00000452544.2:ENST00000637887.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	13	102	2	1.5375	1.62405	1.7106	0.0261451	0.0123768	0.133676	0.0916406
chr16	29588795	29588895	6471488	0	-	0.53	(0.515,0.57]	chr16	625297	191	INTRON	INTRON	ENSG00000288632:SMG1P2	ENSG00000288632.1:ENSG00000205534.6	ENST00000675579.1:ENST00000566127.1	lncRNA	lncRNA	lncRNA:transcribed_unprocessed_pseudogene	lncRNA:transcribed_unprocessed_pseudogene	7	46	2	1.43029	1.623865	1.81744	0.0645632	0.031028	0.179192	0.143457
chr7	105499731	105499830	3604633	0	-	0.282828	(0.28,0.32]	chr7	336252	41	INTRON	INTRON	PUS7	ENSG00000091127.14	ENST00000481939.5:ENST00000469408.6:ENST00000356362.6:ENST00000482157.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	69	2	1.60333	1.623825	1.64432	0.0606133	0.0413158	0.171142	0.161534
chr5	132758319	132758416	2723745	0	-	0.350515	(0.35,0.378]	chr5	256114	25	UTR3	UTR3:EXON_MRNA:INTRON	SEPTIN8	ENSG00000164402.14	ENST00000378719.7:ENST00000481030.1:ENST00000378721.8:ENST00000296873.11:ENST00000448933.5:ENST00000620483.4:ENST00000378706.5:ENST00000378699.6:ENST00000378701.5:ENST00000458488.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	14	115	2	1.32191	1.623805	1.9257	0.0437383	0.00586705	0.14901	0.0690758
chr13	95156712	95156811	5638408	0	-	0.424242	(0.408,0.44]	chr13	537060	79	INTRON	INTRON	ABCC4	ENSG00000125257.16	ENST00000645237.2:ENST00000643051.1:ENST00000643842.1:ENST00000646439.1:ENST00000643816.1:ENST00000536256.3:ENST00000643556.1:ENST00000629385.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	69	2	1.53812	1.6237249999999999	1.70933	0.0501609	0.0189186	0.156383	0.118303
chr2	171132654	171132754	1263817	0	-	0.46	(0.44,0.476]	chr2	133921	144	INTRON	INTRON	TLK1	ENSG00000198586.14	ENST00000431350.7:ENST00000360843.7:ENST00000359766.7:ENST00000521943.5:ENST00000409443.6:ENST00000413010.5:ENST00000470340.1:ENST00000466220.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	62	2	1.60176	1.623695	1.64563	0.0389597	0.0363922	0.160861	0.138959
chr17	82467086	82467184	6692349	0	+	0.581633	(0.57,1]	chr17	654561	23	INTRON	INTRON	NARF	ENSG00000141562.19	ENST00000579198.5:ENST00000390006.8:ENST00000583181.5:ENST00000584192.5:ENST00000580296.5:ENST00000345415.11:ENST00000581202.5:ENST00000374611.9:ENST00000457415.7:ENST00000581795.5:ENST00000584411.5:ENST00000577812.5:ENST00000581743.5:ENST00000577432.5:ENST00000582907.5:ENST00000309794.16:ENST00000578082.5:ENST00000580748.1:ENST00000577410.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	23	83	2	1.28655	1.623615	1.96068	0.0176915	0.0019494	0.11319	0.0400465
chr7	119711663	119711763	3628454	0	-	0.52	(0.515,0.57]	chr7	337319	63	INTRON	INTRON	LINC02476	ENSG00000225546.6	ENST00000660268.1:ENST00000431071.5	lncRNA	lncRNA	lncRNA	lncRNA	17	108	2	1.57348	1.62348	1.67348	0.0149632	0.00720605	0.0994339	0.0756278
chr12	48681052	48681137	5319263	0	-	0.411765	(0.408,0.44]	chr12	506375	3	SS5_PROX	SS5_PROX:INTRON	KANSL2	ENSG00000139620.13	ENST00000420613.7:ENST00000550347.5:ENST00000546701.5:ENST00000549574.5:ENST00000553086.5:ENST00000547582.5:ENST00000550931.5:ENST00000550870.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	13	98	2	1.40383	1.6234199999999999	1.84301	0.0275038	0.0174311	0.123904	0.112689
chr18	2689147	2689247	6865203	0	+	0.26	[0,0.28]	chr18	679973	4	SS5_PROX	SS5_PROX:INTRON	SMCHD1	ENSG00000101596.17	ENST00000320876.11:ENST00000688342.1:ENST00000684915.1:ENST00000581226.1:ENST00000693213.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	12	136	2	1.35418	1.623325	1.89247	0.0757936	0.00679749	0.194427	0.0744636
chr2	131566532	131566631	867450	0	+	0.494949	(0.476,0.515]	chr2	97472	18	EXON_LNCRNA	EXON_LNCRNA	ENSG00000286208	ENSG00000286208.1	ENST00000652012.1	lncRNA	lncRNA	lncRNA	lncRNA	6	46	2	1.40757	1.6231849999999999	1.8388	0.0707852	0.0564473	0.184528	0.184423
chr17	76564480	76564578	6677408	0	+	0.479592	(0.476,0.515]	chr17	652151	15	EXON_LNCRNA	EXON_LNCRNA	SNHG16	ENSG00000163597.16	ENST00000661348.2:ENST00000670737.2:ENST00000653677.2:ENST00000493536.7:ENST00000667091.1:ENST00000586846.2:ENST00000448136.5:ENST00000668511.1:ENST00000590435.5:ENST00000587838.2	lncRNA	lncRNA	lncRNA	lncRNA	12	95	2	1.48272	1.623055	1.76339	0.0410274	0.00972118	0.161534	0.0831288
chr6	27811028	27811118	2839011	0	+	0.433333	(0.408,0.44]	chr6	266438	7	UTR3	UTR3:EXON_MRNA	H3C10	ENSG00000278828.2	ENST00000369163.4	protein_coding	protein_coding	protein_coding	protein_coding	9	70	2	1.54151	1.6228	1.70409	0.0368312	0.028108	0.138959	0.137011
chr22	21435589	21435688	7481355	0	+	0.585859	(0.57,1]	chr22	763209	145	INTRON	INTRON	HIC2	ENSG00000169635.10	ENST00000407464.7:ENST00000407598.2	protein_coding	protein_coding	protein_coding	protein_coding	12	46	2	1.44125	1.622745	1.80424	0.0284106	0.0129439	0.126415	0.0991015
chr3	6573364	6573464	1356976	0	+	0.26	[0,0.28]	chr3	142512	147	INTRON	INTRON	ENSG00000189229	ENSG00000189229.12	ENST00000433639.1:ENST00000655754.1:ENST00000653839.1:ENST00000662846.1:ENST00000414438.2:ENST00000658468.1:ENST00000669512.1:ENST00000667028.1:ENST00000655541.1:ENST00000668643.1:ENST00000671568.1:ENST00000671036.1:ENST00000669798.1:ENST00000655753.1:ENST00000655856.1:ENST00000658398.1:ENST00000661518.1:ENST00000661279.1:ENST00000655495.1:ENST00000663041.1:ENST00000659827.1:ENST00000667716.1:ENST00000662508.1:ENST00000668416.1:ENST00000658133.1:ENST00000342990.4:ENST00000660054.1:ENST00000671370.1	lncRNA	lncRNA	lncRNA	lncRNA	10	113	2	1.40589	1.62274	1.83959	0.0666282	0.0146743	0.182954	0.106556
chr7	105540017	105540116	3375764	0	+	0.242424	[0,0.28]	chr7	316053	29	INTRON	INTRON	RINT1	ENSG00000135249.8	ENST00000467392.5:ENST00000482041.5:ENST00000493041.5:ENST00000257700.7:ENST00000497979.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	27	306	2	1.16159	1.62259	2.08359	0.0597112	8.86896e-4	0.169066	0.0271952
chr18	9105777	9105877	6868624	0	+	0.36	(0.35,0.378]	chr18	680510	4	INTRON	INTRON	NDUFV2	ENSG00000178127.13	ENST00000577703.1:ENST00000318388.11:ENST00000583375.5:ENST00000400033.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	21	166	2	1.62064	1.6224150000000002	1.62419	0.0187402	0.00523677	0.108861	0.0656295
chr11	86060662	86060762	5014759	0	-	0.34	(0.32,0.35]	chr11	473022	287	INTRON	INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000630913.2:ENST00000528398.5:ENST00000356360.9:ENST00000534412.5:ENST00000531558.1:ENST00000531930.5:ENST00000532041.5:ENST00000525162.5:ENST00000528256.1:ENST00000528411.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	29	254	2	1.43664	1.622375	1.80811	0.0189445	0.00186717	0.108861	0.0399902
chr4	126696364	126696464	2237673	0	-	0.24	[0,0.28]	chr4	219023	2309	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	18	182	2	1.34838	1.6223649999999998	1.89635	0.0250357	0.0161478	0.132972	0.101453
chr12	122621289	122621380	5241603	0	+	0.296703	(0.28,0.32]	chr12	497900	3	INTRON	INTRON	KNTC1	ENSG00000184445.12	ENST00000450485.6:ENST00000333479.12:ENST00000436959.7:ENST00000534995.1	protein_coding	protein_coding	protein_coding	protein_coding	6	60	2	1.40698	1.622345	1.83771	0.0778529	0.0591725	0.196685	0.189982
chr11	3757993	3758093	4894767	0	-	0.53	(0.515,0.57]	chr11	458876	42	INTRON	INTRON	NUP98	ENSG00000110713.17	ENST00000359171.8:ENST00000324932.12:ENST00000650171.1:ENST00000355260.7:ENST00000397004.8:ENST00000397007.8:ENST00000527104.5:ENST00000529379.1:ENST00000397013.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	64	2	1.58964	1.622325	1.65501	0.0408	0.016231	0.1451	0.109464
chr10	3120144	3120244	4382074	0	+	0.38	(0.378,0.408]	chr10	404145	1	SS5_PROX	SS5_PROX:INTRON	PFKP	ENSG00000067057.18	ENST00000381125.9:ENST00000381075.7:ENST00000678206.1:ENST00000678089.1:ENST00000676796.1:ENST00000415005.6:ENST00000413079.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	19	147	2	1.44292	1.62218	1.80144	0.0159086	0.00720085	0.109464	0.0727625
chr20	32808291	32808388	7257154	0	+	0.381443	(0.378,0.408]	chr20	737245	5	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	DNMT3B	ENSG00000088305.19	ENST00000696232.1:ENST00000328111.6:ENST00000696231.1:ENST00000348286.6:ENST00000353855.6:ENST00000696233.1:ENST00000201963.3:ENST00000696238.1:ENST00000696245.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	66	2	1.45712	1.622075	1.78703	0.0597975	0.0240043	0.189982	0.119664
chr3	143025322	143025414	1529331	0	+	0.336957	(0.32,0.35]	chr3	159397	4	INTRON	INTRON	U2SURP	ENSG00000163714.18	ENST00000488497.7:ENST00000473835.7:ENST00000493598.6:ENST00000463563.6:ENST00000488587.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	90	2	1.30365	1.621795	1.93994	0.0773448	0.0084207	0.196285	0.0825628
chr1	226065555	226065655	327798	0	+	0.28	[0,0.28]	chr1	37751	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	H3-3A	ENSG00000163041.13	ENST00000366816.5:ENST00000366814.3:ENST00000366815.10:ENST00000655399.1:ENST00000667897.1:ENST00000656829.1:ENST00000666609.1:ENST00000661429.1:ENST00000366813.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	130	2	1.60899	1.62173	1.63447	0.0503341	0.0151649	0.156383	0.108535
chr3	42622912	42623012	1406201	0	+	0.26	[0,0.28]	chr3	147675	10	INTRON	INTRON	NKTR	ENSG00000114857.19	ENST00000468735.6:ENST00000487466.5:ENST00000429888.5:ENST00000232978.13:ENST00000478488.1:ENST00000465584.5:ENST00000466553.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	81	2	1.34345	1.621715	1.89998	0.0599553	0.0563613	0.184423	0.169548
chr17	64505789	64505872	6815880	0	-	0.578313	(0.57,1]	chr17	673833	1	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	DDX5	ENSG00000108654.16	ENST00000225792.10:ENST00000678890.1:ENST00000676601.1:ENST00000676575.1:ENST00000676969.1:ENST00000678810.1:ENST00000585317.2:ENST00000678110.1:ENST00000580026.6:ENST00000676785.1:ENST00000585111.2:ENST00000577922.6:ENST00000450599.7:ENST00000678814.1:ENST00000677726.1:ENST00000579461.2:ENST00000540698.6:ENST00000581230.5:ENST00000581693.5:ENST00000582326.2:ENST00000578491.2:ENST00000578804.5:ENST00000578400.5:ENST00000581697.5:ENST00000581806.5:ENST00000585060.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	24	88	2	1.4329	1.62171	1.81052	0.00712217	0.00601156	0.0723634	0.0700813
chr5	66157835	66157932	2372626	0	+	0.268041	[0,0.28]	chr5	228660	2	EXON_MRNA	EXON_MRNA:INTRON	SREK1	ENSG00000153914.16	ENST00000521691.5:ENST00000334121.11:ENST00000520953.5:ENST00000522912.5:ENST00000524111.5:ENST00000380918.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	18	169	2	1.11246	1.621535	2.13061	0.0532255	0.0106411	0.179876	0.0861859
chr5	54004411	54004511	2617848	0	-	0.5	(0.476,0.515]	chr5	248835	924	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	15	110	2	1.24792	1.621455	1.99499	0.0459059	0.00408599	0.149888	0.0581771
chr2	55032618	55032718	1121231	0	-	0.38	(0.378,0.408]	chr2	120163	40	INTRON	INTRON	RTN4	ENSG00000115310.19	ENST00000404909.5:ENST00000394611.6:ENST00000317610.11:ENST00000357732.8:ENST00000337526.11:ENST00000357376.7:ENST00000405240.5:ENST00000438462.1:ENST00000427710.5	protein_coding	protein_coding	protein_coding	protein_coding	15	118	2	1.395	1.621405	1.84781	0.0467334	0.00354872	0.151763	0.0547449
chr16	18858046	18858134	6457382	0	-	0.284091	(0.28,0.32]	chr16	622744	4	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	SMG1	ENSG00000157106.18	ENST00000446231.7:ENST00000565324.5:ENST00000569764.1:ENST00000563235.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	88	2	1.57779	1.621385	1.66498	0.0502605	0.0244852	0.156383	0.131869
chr1	211261019	211261110	305712	0	+	0.516484	(0.515,0.57]	chr1	35237	2	EXON_LNCRNA	EXON_LNCRNA:INTRON	RCOR3	ENSG00000117625.14	ENST00000534478.5:ENST00000533469.5:ENST00000367006.8:ENST00000419091.7:ENST00000452621.6:ENST00000528926.5:ENST00000528408.5:ENST00000472734.1:ENST00000529572.5:ENST00000367005.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	56	2	1.48827	1.620995	1.75372	0.0386904	0.0301583	0.14279	0.142572
chr22	19502010	19502108	7477063	0	+	0.367347	(0.35,0.378]	chr22	762436	25	INTRON	INTRON	CDC45	ENSG00000093009.11	ENST00000407835.6:ENST00000437685.6:ENST00000438587.6:ENST00000672837.1:ENST00000263201.7:ENST00000404724.7:ENST00000428937.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	13	102	2	1.26497	1.6207150000000001	1.97646	0.0420633	0.0193942	0.148005	0.119831
chr7	119721249	119721349	3628550	0	-	0.3	(0.28,0.32]	chr7	337319	159	INTRON	INTRON	LINC02476	ENSG00000225546.6	ENST00000660268.1:ENST00000431071.5	lncRNA	lncRNA	lncRNA	lncRNA	10	98	2	1.45235	1.62045	1.78855	0.0543728	0.0159081	0.164972	0.109464
chr18	800830	800930	6940592	0	-	0.55	(0.515,0.57]	chr18	686527	28	INTRON	INTRON	YES1	ENSG00000176105.14	ENST00000584307.5:ENST00000314574.5:ENST00000577611.1:ENST00000581960.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	17	110	2	1.54503	1.6204	1.69577	0.0154936	0.00734494	0.109024	0.0738721
chr12	110297736	110297835	5226267	0	+	0.454545	(0.44,0.476]	chr12	495250	6	INTRON	INTRON	ATP2A2	ENSG00000174437.18	ENST00000308664.10:ENST00000539276.7:ENST00000377685.9:ENST00000548169.2:ENST00000550248.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	47	2	1.61163	1.620295	1.62896	0.0598319	0.0546679	0.182674	0.169278
chr2	197907186	197907286	970128	0	+	0.34	(0.32,0.35]	chr2	104858	965	INTRON	INTRON	PLCL1	ENSG00000115896.16	ENST00000428675.6:ENST00000435320.1:ENST00000487695.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	81	2	1.43561	1.62024	1.80487	0.0543363	0.0210603	0.164972	0.122559
chr21	37415389	37415489	7406710	0	+	0.29	(0.28,0.32]	chr21	754858	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	DYRK1A	ENSG00000157540.22	ENST00000646523.1:ENST00000647425.1:ENST00000647188.2:ENST00000647504.1:ENST00000644942.1:ENST00000338785.8:ENST00000643624.1:ENST00000643551.1:ENST00000426672.6:ENST00000398960.7	protein_coding	protein_coding	protein_coding	protein_coding	9	85	2	1.59601	1.620165	1.64432	0.0606133	0.0236042	0.171142	0.12907
chr8	26330698	26330798	3716489	0	+	0.37	(0.35,0.378]	chr8	345376	49	INTRON	INTRON	PPP2R2A	ENSG00000221914.11	ENST00000380737.8:ENST00000520329.5:ENST00000518254.5:ENST00000524169.5:ENST00000518397.5:ENST00000522535.5:ENST00000665949.1:ENST00000522150.5:ENST00000523473.5:ENST00000521095.5:ENST00000660435.1:ENST00000523925.5:ENST00000524099.5:ENST00000315985.7:ENST00000519636.5:ENST00000522482.5:ENST00000521557.5:ENST00000519439.5:ENST00000521484.5:ENST00000523964.5:ENST00000667651.1:ENST00000657943.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	72	2	1.53417	1.62012	1.70607	0.0482819	0.0271808	0.153283	0.136494
chr6	63668448	63668548	2883617	0	+	0.39	(0.378,0.408]	chr6	273559	213	INTRON	INTRON	PHF3	ENSG00000118482.12	ENST00000262043.8:ENST00000506783.5:ENST00000481385.6:ENST00000515594.5:ENST00000494284.6:ENST00000509876.5:ENST00000509330.5:ENST00000393387.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	64	2	1.39189	1.6200999999999999	1.84831	0.0751636	0.0172621	0.193731	0.111749
chr2	107739945	107740045	1205949	0	-	0.41	(0.408,0.44]	chr2	128532	223	INTRON	INTRON	LINC01885:ENSG00000286769	ENSG00000237880.2:ENSG00000286769.1	ENST00000654481.1:ENST00000669817.1	lncRNA	lncRNA	lncRNA	lncRNA	8	64	2	1.60905	1.619825	1.6306	0.0544158	0.02971	0.182272	0.129022
chr6	85636766	85636866	3151385	0	-	0.37	(0.35,0.378]	chr6	293890	4	SS5_PROX	SS5_PROX:INTRON	ENSG00000271793:SYNCRIP	ENSG00000271793.2:ENSG00000135316.19	ENST00000682083.1:ENST00000683074.1:ENST00000681965.1:ENST00000682504.1:ENST00000682106.1:ENST00000683364.1:ENST00000683436.1:ENST00000684220.1:ENST00000683909.1:ENST00000684462.1:ENST00000616122.5:ENST00000678528.1:ENST00000676637.1:ENST00000677771.1:ENST00000355238.11:ENST00000678878.1:ENST00000677481.1:ENST00000677646.1:ENST00000676630.1:ENST00000678618.1:ENST00000676542.1:ENST00000677059.1:ENST00000444272.2:ENST00000678899.1:ENST00000369622.8:ENST00000678355.1:ENST00000676688.1:ENST00000677514.1:ENST00000678816.1:ENST00000678930.1:ENST00000678589.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	16	128	2	1.16369	1.619775	2.07586	0.0580548	0.00297794	0.167723	0.0502007
chr14	34459395	34459495	5866109	0	-	0.41	(0.408,0.44]	chr14	557089	237	INTRON	INTRON	EGLN3:SPTSSA	ENSG00000129521.15:ENSG00000165389.7	ENST00000551935.5:ENST00000298130.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	90	2	1.56562	1.61959	1.67356	0.0239999	0.0185824	0.119664	0.117258
chr16	56432313	56432412	6491319	0	-	0.414141	(0.408,0.44]	chr16	627745	33	UTR3	UTR3:EXON_MRNA	NUDT21	ENSG00000167005.14	ENST00000300291.10	protein_coding	protein_coding	protein_coding	protein_coding	18	128	2	1.27114	1.6195849999999998	1.96803	0.0280662	0.00573171	0.137011	0.0657377
chr21	33450429	33450526	7440675	0	-	0.556701	(0.515,0.57]	chr21	759328	18	UTR3	UTR3:EXON_MRNA	TMEM50B	ENSG00000142188.17	ENST00000420455.5:ENST00000542230.7:ENST00000441128.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	15	99	2	1.18251	1.6195399999999998	2.05657	0.0690131	0.00134538	0.184298	0.0337766
chr5	176528158	176528255	2775638	0	-	0.360825	(0.35,0.378]	chr5	261434	16	UTR3	UTR3:EXON_MRNA	RNF44	ENSG00000146083.12	ENST00000274811.9	protein_coding	protein_coding	protein_coding	protein_coding	10	82	2	1.22527	1.619525	2.01378	0.0773701	0.00952336	0.196285	0.0863913
chr6	2967885	2967985	3047695	0	-	0.41	(0.408,0.44]	chr6	283597	16	UTR5	UTR5:EXON_MRNA:INTRON	SERPINB6	ENSG00000124570.21	ENST00000643098.1:ENST00000380546.7:ENST00000380539.7:ENST00000380529.5:ENST00000649845.1:ENST00000644178.1:ENST00000612421.3:ENST00000616722.4:ENST00000642543.1:ENST00000644388.1:ENST00000380520.6:ENST00000645580.1:ENST00000644693.1:ENST00000646775.1:ENST00000645421.1:ENST00000643227.1:ENST00000646688.1:ENST00000644777.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	60	2	1.49789	1.619485	1.74108	0.0424099	0.0390091	0.161009	0.148082
chr1	109096345	109096443	179577	0	+	0.377551	(0.35,0.378]	chr1	19602	19	UTR3	UTR3:EXON_MRNA	TMEM167B	ENSG00000215717.7	ENST00000338272.9:ENST00000651489.1	protein_coding	protein_coding	protein_coding	protein_coding	9	75	2	1.33846	1.619435	1.90041	0.0687435	0.0145936	0.184298	0.105992
chr10	3777176	3777274	4543116	0	-	0.428571	(0.408,0.44]	chr10	419496	13	UTR3	UTR3:EXON_MRNA:INTRON	KLF6	ENSG00000067082.15	ENST00000497571.6:ENST00000461124.1:ENST00000542957.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	60	2	1.40381	1.61941	1.83501	0.0521927	0.0323448	0.177259	0.133003
chr8	102359570	102359651	4012220	0	-	0.358025	(0.35,0.378]	chr8	367219	1	SS5_PROX	SS5_PROX:INTRON	UBR5	ENSG00000104517.13	ENST00000520539.6:ENST00000220959.8:ENST00000521922.5	protein_coding	protein_coding	protein_coding	protein_coding	11	75	2	1.19652	1.61938	2.04224	0.0514734	0.0363073	0.176696	0.138959
chr9	37124335	37124434	4117693	0	+	0.333333	(0.32,0.35]	chr9	375364	23	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000322831.6:ENST00000461038.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	63	2	1.55682	1.61935	1.68188	0.0724487	0.031521	0.188101	0.144381
chr1	31281989	31282088	413142	0	-	0.373737	(0.35,0.378]	chr1	49796	6	EXON_LNCRNA	EXON_LNCRNA:SS3_PROX:INTRON	SNRNP40	ENSG00000060688.13	ENST00000263694.9:ENST00000489853.1:ENST00000474025.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	75	2	1.49028	1.6192950000000002	1.74831	0.0590834	0.0169142	0.168067	0.110899
chr11	2950380	2950468	4891555	0	-	0.386364	(0.378,0.408]	chr11	458268	8	INTRON	INTRON	NAP1L4	ENSG00000205531.13	ENST00000620138.4:ENST00000380542.9:ENST00000469805.5:ENST00000469089.5:ENST00000526115.5:ENST00000492594.6:ENST00000526023.5:ENST00000492685.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	17	132	2	1.34201	1.619275	1.89654	0.0268484	0.006077	0.135178	0.0676501
chr3	6555289	6555389	1356794	0	+	0.34	(0.32,0.35]	chr3	142508	422	INTRON	INTRON	ENSG00000189229	ENSG00000189229.12	ENST00000660158.1:ENST00000433639.1:ENST00000655754.1:ENST00000653839.1:ENST00000662846.1:ENST00000659876.1:ENST00000414438.2:ENST00000658468.1:ENST00000414603.1:ENST00000669512.1:ENST00000667028.1:ENST00000655541.1:ENST00000668643.1:ENST00000671568.1:ENST00000671036.1:ENST00000669798.1:ENST00000655753.1:ENST00000655856.1:ENST00000658398.1:ENST00000661518.1:ENST00000661279.1:ENST00000655495.1:ENST00000663041.1:ENST00000659827.1:ENST00000667716.1:ENST00000662508.1:ENST00000668416.1:ENST00000658133.1:ENST00000659651.1:ENST00000342990.4:ENST00000660054.1:ENST00000671370.1	lncRNA	lncRNA	lncRNA	lncRNA	7	63	2	1.54741	1.61924	1.69107	0.0517392	0.0473733	0.169265	0.159306
chr16	23560176	23560275	6323082	0	+	0.373737	(0.35,0.378]	chr16	605545	1	INTRON	INTRON	UBFD1	ENSG00000103353.16	ENST00000567212.5:ENST00000395878.8:ENST00000571064.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	75	2	1.55918	1.6191550000000001	1.67913	0.0345494	0.0326427	0.145164	0.13657
chr16	9104164	9104263	6285497	0	+	0.575758	(0.57,1]	chr16	601929	10	UTR3	UTR3:EXON_MRNA:INTRON	C16orf72	ENSG00000182831.12	ENST00000327827.12:ENST00000574285.2	protein_coding	protein_coding	protein_coding	protein_coding	15	56	2	1.59031	1.6187999999999998	1.64729	0.0231375	0.00821658	0.118148	0.0812248
chr16	85574844	85574944	6415580	0	+	0.6	(0.57,1]	chr16	615470	181	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	11	43	2	1.58776	1.6186	1.64944	0.0295652	0.016446	0.142135	0.102201
chr16	23887376	23887476	6324274	0	+	0.36	(0.35,0.378]	chr16	605697	182	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000645517.1:ENST00000498739.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	98	2	1.57499	1.618595	1.6622	0.0263261	0.0185901	0.122221	0.117264
chr5	131393790	131393890	2485940	0	+	0.35	(0.32,0.35]	chr5	237145	28	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	CDC42SE2	ENSG00000158985.14	ENST00000395246.5:ENST00000505065.2:ENST00000360515.7:ENST00000502582.1:ENST00000506929.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	27	208	2	1.0191	1.618465	2.21783	0.0497365	0.00180423	0.17488	0.0382814
chr6	110875105	110875205	2938945	0	+	0.56	(0.515,0.57]	chr6	276758	1	CDS_START	CDS_START:CDS:UTR5:EXON_MRNA	AMD1	ENSG00000123505.19	ENST00000451850.6:ENST00000675380.1:ENST00000368882.8:ENST00000672937.2:ENST00000368885.8:ENST00000368877.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	13	83	2	1.55764	1.618455	1.67927	0.0183076	0.0157733	0.11576	0.101453
chr16	29513088	29513188	6470696	0	-	0.53	(0.515,0.57]	chr16	625147	72	INTRON	INTRON	ENSG00000288632	ENSG00000288632.1	ENST00000675579.1	lncRNA	lncRNA	lncRNA	lncRNA	18	112	2	1.39715	1.61834	1.83953	0.0173947	0.00755489	0.104397	0.0773151
chr3	101681765	101681857	1758891	0	-	0.554348	(0.515,0.57]	chr3	178423	7	EXON_MRNA	EXON_MRNA:INTRON	RPL24	ENSG00000114391.13	ENST00000394077.8:ENST00000464595.1:ENST00000495401.5:ENST00000488288.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	13	85	2	1.5318	1.6182349999999999	1.70467	0.0258209	0.0109309	0.133676	0.0873034
chr22	16786903	16787003	7546268	0	-	0.4	(0.378,0.408]	chr22	771315	21	INTRON	INTRON	XKR3	ENSG00000172967.8	ENST00000331428.5:ENST00000684488.1	protein_coding	protein_coding	protein_coding	protein_coding	10	80	2	1.58985	1.6179649999999999	1.64608	0.0290335	0.0269107	0.141186	0.123442
chr7	107160357	107160454	3378337	0	+	0.237113	[0,0.28]	chr7	316304	9	UTR3	UTR3:EXON_MRNA	PRKAR2B	ENSG00000005249.13	ENST00000265717.5	protein_coding	protein_coding	protein_coding	protein_coding	26	280	2	1.53427	1.617765	1.70126	0.0129079	0.00978529	0.0927903	0.0877296
chr1	167954156	167954256	248664	0	+	0.53	(0.515,0.57]	chr1	29542	19	INTRON	INTRON	DCAF6	ENSG00000143164.16	ENST00000450548.5:ENST00000470919.5:ENST00000432587.6:ENST00000367843.7:ENST00000470721.5:ENST00000367840.4:ENST00000312263.10:ENST00000455334.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	13	78	2	1.41386	1.61764	1.82142	0.0219807	0.0191173	0.123836	0.108861
chr8	125950076	125950176	3859366	0	+	0.52	(0.515,0.57]	chr8	355335	70	INTRON	INTRON	ENSG00000286122	ENSG00000286122.1	ENST00000651999.1:ENST00000652177.1	lncRNA	lncRNA	lncRNA	lncRNA	9	59	2	1.37301	1.6175950000000001	1.86218	0.0752392	0.0100169	0.193891	0.0880217
chr5	179623133	179623229	2779779	0	-	0.614583	(0.57,1]	chr5	262337	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HNRNPH1	ENSG00000169045.17	ENST00000329433.11:ENST00000393432.9:ENST00000356731.9:ENST00000442819.6:ENST00000514332.5:ENST00000510411.5:ENST00000510678.5:ENST00000514731.5:ENST00000503105.5:ENST00000504779.6:ENST00000508103.5:ENST00000506721.5:ENST00000523137.5:ENST00000505811.5:ENST00000510431.5:ENST00000519056.5:ENST00000504348.5:ENST00000513225.5:ENST00000524180.5:ENST00000513972.5:ENST00000519707.5:ENST00000519455.5:ENST00000515158.5:ENST00000521116.5:ENST00000505087.1:ENST00000515714.5:ENST00000512273.5:ENST00000503664.1:ENST00000515446.1:ENST00000513230.1:ENST00000522256.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	33	119	2	1.41519	1.617575	1.81996	0.00559985	0.00159423	0.0678837	0.0364566
chr1	225414105	225414201	645612	0	-	0.427083	(0.408,0.44]	chr1	76357	11	INTRON	INTRON	LBR	ENSG00000143815.15	ENST00000272163.9:ENST00000338179.6:ENST00000651341.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	50	2	1.35436	1.61749	1.88062	0.0603719	0.0534548	0.19151	0.162935
chr1	32333932	32334027	414820	0	-	0.431579	(0.408,0.44]	chr1	50006	2	UTR3	UTR3:EXON_MRNA	MARCKSL1	ENSG00000175130.7	ENST00000329421.8	protein_coding	protein_coding	protein_coding	protein_coding	15	118	2	1.57433	1.61747	1.66061	0.0229059	0.0102709	0.12581	0.0850389
chr5	10436247	10436345	2318508	0	+	0.27551	[0,0.28]	chr5	224765	27	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	MARCHF6	ENSG00000145495.16	ENST00000274140.10:ENST00000606497.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	16	177	2	1.57525	1.61746	1.65967	0.0222977	0.0161993	0.1165	0.109464
chr1	45610263	45610360	93474	0	+	0.309278	(0.28,0.32]	chr1	12613	11	EXON_LNCRNA	EXON_LNCRNA:INTRON	NASP	ENSG00000132780.17	ENST00000437901.6:ENST00000537798.5:ENST00000437362.6:ENST00000350030.8:ENST00000527359.5:ENST00000453748.5:ENST00000525515.5:ENST00000528238.5:ENST00000372052.8:ENST00000351223.7:ENST00000530073.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	11	107	2	1.45235	1.617425	1.7825	0.0543728	0.0119176	0.164972	0.0962115
chr10	96152361	96152460	4502421	0	+	0.292929	(0.28,0.32]	chr10	414487	4	INTRON	INTRON	ZNF518A	ENSG00000177853.15	ENST00000614149.2:ENST00000488700.5:ENST00000624776.4:ENST00000563195.1:ENST00000316045.10	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	79	2	1.51187	1.61737	1.72287	0.0598267	0.0286502	0.169278	0.139456
chr22	20935442	20935542	7480698	0	+	0.24	[0,0.28]	chr22	763096	8	INTRON	INTRON	CRKL	ENSG00000099942.13	ENST00000354336.8:ENST00000411769.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	123	2	1.50406	1.6172499999999999	1.73044	0.0516061	0.0161924	0.159058	0.109464
chr6	99423116	99423216	3166126	0	-	0.38	(0.378,0.408]	chr6	295334	63	INTRON	INTRON	PNISR	ENSG00000132424.17	ENST00000681615.1:ENST00000369239.10:ENST00000647811.1:ENST00000481229.2:ENST00000679525.1:ENST00000681611.1:ENST00000438806.5:ENST00000478777.5:ENST00000492294.5:ENST00000498075.1:ENST00000466057.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	12	93	2	1.55777	1.6171950000000002	1.67662	0.0243251	0.0193744	0.12011	0.119831
chr1	47376944	47377044	98014	0	+	0.34	(0.32,0.35]	chr1	13170	3	UTR3	UTR3:EXON_MRNA	CMPK1	ENSG00000162368.14	ENST00000371873.10:ENST00000371871.8:ENST00000450808.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	13	115	2	1.46859	1.617135	1.76568	0.0399069	0.00911113	0.14308	0.0855292
chr16	84720506	84720605	6410108	0	+	0.323232	(0.32,0.35]	chr16	615272	36	INTRON	INTRON	USP10	ENSG00000103194.16	ENST00000562743.5:ENST00000540269.6:ENST00000563892.5:ENST00000562092.1:ENST00000569511.5:ENST00000219473.12:ENST00000570191.5:ENST00000563048.5:ENST00000562283.5:ENST00000563386.5:ENST00000569038.5:ENST00000570053.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	13	115	2	1.35397	1.61709	1.88021	0.0475566	0.00751788	0.153019	0.0773151
chr1	167639329	167639426	247048	0	+	0.43299	(0.408,0.44]	chr1	29425	5	INTRON	INTRON	RCSD1	ENSG00000198771.11	ENST00000537350.5:ENST00000361496.3:ENST00000367854.8:ENST00000475127.5:ENST00000472038.1:ENST00000461790.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	60	2	1.35436	1.617065	1.87977	0.0603719	0.0282738	0.19151	0.125825
chr22	20110991	20111089	7478555	0	+	0.438776	(0.408,0.44]	chr22	762762	10	UTR3	UTR3:EXON_MRNA	DGCR8	ENSG00000128191.16	ENST00000383024.6:ENST00000351989.8:ENST00000495826.5:ENST00000407755.1:ENST00000498171.5:ENST00000475941.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	13	102	2	1.28785	1.617045	1.94624	0.0494367	0.00627795	0.174213	0.0686495
chr10	125147842	125147942	4714216	0	-	0.53	(0.515,0.57]	chr10	434933	97	INTRON	INTRON	CTBP2	ENSG00000175029.17	ENST00000337195.9:ENST00000411419.6:ENST00000494626.6:ENST00000531469.5:ENST00000460976.5:ENST00000476817.1:ENST00000530884.1:ENST00000467395.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	77	2	1.57902	1.617015	1.65501	0.0229035	0.016231	0.118056	0.109464
chr6	131650149	131650249	2960313	0	+	0.28	[0,0.28]	chr6	278280	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ENPP3	ENSG00000154269.15	ENST00000427707.5:ENST00000414305.5:ENST00000357639.8:ENST00000358229.6:ENST00000423831.5:ENST00000470930.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	79	2	1.56918	1.61701	1.66484	0.0617844	0.0481076	0.174281	0.171525
chr9	131463576	131463674	4217676	0	+	0.326531	(0.32,0.35]	chr9	386778	39	INTRON	INTRON	PRRC2B	ENSG00000288701.1	ENST00000684596.1:ENST00000683519.1:ENST00000682501.1:ENST00000684736.1	protein_coding	protein_coding	protein_coding	protein_coding	8	71	2	1.30365	1.6169799999999999	1.93031	0.0773448	0.0231421	0.196285	0.126939
chr5	104113301	104113401	2441548	0	+	0.53	(0.515,0.57]	chr5	234410	80	INTRON	INTRON	LINC02163	ENSG00000251026.2	ENST00000662211.1:ENST00000666145.1	lncRNA	lncRNA	lncRNA	lncRNA	17	104	2	1.2307	1.6168999999999998	2.0031	0.0366631	0.00357298	0.138959	0.0548435
chr9	124738545	124738645	4348888	0	-	0.54	(0.515,0.57]	chr9	399261	48	INTRON	INTRON	NR6A1	ENSG00000148200.17	ENST00000487099.7:ENST00000373584.7:ENST00000416460.6:ENST00000344523.8	protein_coding	protein_coding	protein_coding	protein_coding	7	43	2	1.44237	1.616865	1.79136	0.0638444	0.0456196	0.177811	0.164236
chr6	158508866	158508964	3021329	0	+	0.397959	(0.378,0.408]	chr6	281781	23	UTR3	UTR3:EXON_MRNA	TULP4	ENSG00000130338.13	ENST00000367097.8	protein_coding	protein_coding	protein_coding	protein_coding	7	55	2	1.33751	1.61686	1.89621	0.0677318	0.0488044	0.18426	0.173377
chr2	144489594	144489693	1241500	0	-	0.444444	(0.44,0.476]	chr2	131732	74	INTRON	INTRON	ZEB2	ENSG00000169554.23	ENST00000636471.1:ENST00000627532.3:ENST00000638128.1:ENST00000637304.1:ENST00000636179.1:ENST00000419938.5:ENST00000409487.7:ENST00000636732.2:ENST00000636026.2:ENST00000675069.1:ENST00000689298.1:ENST00000539609.7:ENST00000558170.6:ENST00000303660.8:ENST00000427902.5:ENST00000637267.2:ENST00000392861.6:ENST00000431672.4:ENST00000409211.5:ENST00000465308.5:ENST00000434448.5:ENST00000472146.5:ENST00000461784.3:ENST00000476394.5:ENST00000637591.2:ENST00000479735.1:ENST00000453352.5:ENST00000435831.5:ENST00000444559.5:ENST00000630572.2:ENST00000484313.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	81	2	1.26546	1.616755	1.96805	0.0568404	0.0109533	0.167723	0.0925675
chr7	130095727	130095826	3413847	0	+	0.363636	(0.35,0.378]	chr7	319104	4	INTRON	INTRON	KLHDC10	ENSG00000128607.14	ENST00000335420.10:ENST00000463413.1:ENST00000468226.1	protein_coding	protein_coding	protein_coding	protein_coding	10	77	2	1.35596	1.61661	1.87726	0.0404607	0.0297629	0.161534	0.12908
chr10	22703337	22703437	4580392	0	-	0.44	(0.408,0.44]	chr10	422046	88	INTRON	INTRON	PIP4K2A	ENSG00000150867.14	ENST00000376573.9:ENST00000545335.5	protein_coding	protein_coding	protein_coding	protein_coding	12	90	2	1.57567	1.61653	1.65739	0.033074	0.012928	0.133898	0.0990564
chr19	28497446	28497546	7166069	0	-	0.52	(0.515,0.57]	chr19	724189	292	INTRON	INTRON	ENSG00000283403:ENSG00000267243	ENSG00000283403.1:ENSG00000267243.6	ENST00000592347.5:ENST00000593065.5	lncRNA	lncRNA	lncRNA	lncRNA	9	56	2	1.22815	1.616415	2.00468	0.0710142	0.0166344	0.185044	0.110511
chr1	21769869	21769969	396737	0	-	0.28	[0,0.28]	chr1	47345	117	INTRON	INTRON	USP48	ENSG00000090686.16	ENST00000400301.5:ENST00000308271.14:ENST00000529637.5:ENST00000421625.6:ENST00000527823.5:ENST00000532737.1:ENST00000489108.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	114	2	1.50018	1.61622	1.73226	0.0524108	0.0246234	0.160429	0.131869
chr21	34869667	34869767	7447081	0	-	0.53	(0.515,0.57]	chr21	759849	97	INTRON	INTRON	RUNX1	ENSG00000159216.19	ENST00000300305.7:ENST00000675419.1:ENST00000437180.5:ENST00000344691.8:ENST00000482318.5:ENST00000399240.5:ENST00000358356.9:ENST00000399237.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	38	2	1.44089	1.616125	1.79136	0.0638444	0.0617046	0.193423	0.177811
chr15	92910121	92910220	6103791	0	+	0.494949	(0.476,0.515]	chr15	581401	11	INTRON	INTRON	ENSG00000279765:CHD2	ENSG00000279765.3:ENSG00000173575.22	ENST00000629685.2:ENST00000630790.1:ENST00000626874.2:ENST00000394196.9:ENST00000635856.1:ENST00000420239.7:ENST00000628375.2:ENST00000625990.3:ENST00000626782.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	12	85	2	1.30089	1.6159400000000002	1.93099	0.04054	0.0140312	0.161534	0.0959618
chr3	6603342	6603442	1357277	0	+	0.46	(0.44,0.476]	chr3	142522	189	INTRON	INTRON	ENSG00000189229	ENSG00000189229.12	ENST00000433639.1:ENST00000655754.1:ENST00000658468.1:ENST00000669512.1:ENST00000667028.1:ENST00000655541.1:ENST00000668643.1:ENST00000671568.1:ENST00000671036.1:ENST00000669798.1:ENST00000655753.1:ENST00000655856.1:ENST00000658398.1:ENST00000661518.1:ENST00000661279.1:ENST00000655495.1:ENST00000663041.1:ENST00000659827.1:ENST00000667716.1:ENST00000668416.1:ENST00000658133.1:ENST00000342990.4:ENST00000660054.1:ENST00000671370.1	lncRNA	lncRNA	lncRNA	lncRNA	14	103	2	1.33977	1.615885	1.892	0.0340623	0.00935701	0.134916	0.0858596
chr4	55415861	55415959	1960793	0	+	0.510204	(0.476,0.515]	chr4	196562	7	EXON_LNCRNA	EXON_LNCRNA:INTRON	TMEM165	ENSG00000134851.13	ENST00000381334.10:ENST00000506198.5:ENST00000508404.5:ENST00000511710.1:ENST00000514904.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	38	271	2	1.57756	1.61582	1.65408	0.00539098	0.002973	0.0643815	0.0501309
chr10	70406841	70406941	4447102	0	+	0.33	(0.32,0.35]	chr10	410345	19	INTRON	INTRON	EIF4EBP2	ENSG00000148730.7	ENST00000373218.5	protein_coding	protein_coding	protein_coding	protein_coding	13	115	2	1.61555	1.615785	1.61602	0.0249674	0.0165587	0.12011	0.110511
chr6	157834299	157834399	3015873	0	+	0.44	(0.408,0.44]	chr6	281353	42	INTRON	INTRON	SNX9	ENSG00000130340.17	ENST00000614703.4:ENST00000614800.4:ENST00000680863.1:ENST00000679814.1:ENST00000680464.1:ENST00000681186.1:ENST00000679732.1:ENST00000681183.1:ENST00000681534.1:ENST00000681651.1:ENST00000680089.1:ENST00000680078.1:ENST00000680974.1:ENST00000680095.1:ENST00000680015.1:ENST00000681138.1:ENST00000392185.8:ENST00000679790.1:ENST00000680495.1:ENST00000679691.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	16	117	2	1.54949	1.6157599999999999	1.68203	0.0175685	0.011402	0.105143	0.0955101
chr1	32118330	32118430	63556	0	+	0.39	(0.378,0.408]	chr1	8071	98	INTRON	INTRON	KPNA6	ENSG00000025800.14	ENST00000373625.8:ENST00000471599.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	62	2	1.36527	1.615625	1.86598	0.0587392	0.0300232	0.189982	0.129138
chr14	102678295	102678395	5823390	0	+	0.56	(0.515,0.57]	chr14	552490	846	INTRON	INTRON	RCOR1	ENSG00000089902.10	ENST00000262241.7	protein_coding	protein_coding	protein_coding	protein_coding	9	58	2	1.38593	1.61552	1.84511	0.0554883	0.0167182	0.165463	0.110511
chr1	110364883	110364982	182600	0	+	0.292929	(0.28,0.32]	chr1	20257	85	INTRON	INTRON	LAMTOR5-AS1	ENSG00000224699.10	ENST00000626572.2	lncRNA	lncRNA	lncRNA	lncRNA	22	216	2	1.14873	1.615385	2.08204	0.0458821	0.00252683	0.164984	0.0446992
chr22	16807738	16807816	7546478	0	-	0.358974	(0.35,0.378]	chr22	771324	1	CDS	CDS:EXON_MRNA	XKR3	ENSG00000172967.8	ENST00000331428.5:ENST00000684488.1	protein_coding	protein_coding	protein_coding	protein_coding	20	163	2	1.39778	1.61536	1.83294	0.0241176	0.00401531	0.12011	0.0578059
chr1	155922772	155922860	564738	0	-	0.375	(0.35,0.378]	chr1	67470	5	INTRON	INTRON	KHDC4	ENSG00000132680.11	ENST00000368321.8:ENST00000368320.7:ENST00000478002.5:ENST00000368319.3:ENST00000482337.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	16	122	2	1.2802	1.6152950000000001	1.95039	0.0310365	0.0095436	0.143457	0.082068
chr8	26350198	26350298	3716689	0	+	0.47	(0.44,0.476]	chr8	345396	2	SS3_PROX	SS3_PROX:INTRON	PPP2R2A	ENSG00000221914.11	ENST00000380737.8:ENST00000520329.5:ENST00000518254.5:ENST00000524169.5:ENST00000518397.5:ENST00000522535.5:ENST00000665949.1:ENST00000521095.5:ENST00000660435.1:ENST00000523925.5:ENST00000524099.5:ENST00000315985.7:ENST00000519636.5:ENST00000522482.5:ENST00000521557.5:ENST00000519439.5:ENST00000521484.5:ENST00000523964.5:ENST00000667651.1:ENST00000657943.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	13	96	2	1.24699	1.615275	1.98356	0.0484245	0.00757232	0.172383	0.0749063
chr3	36986728	36986828	1655296	0	-	0.43	(0.408,0.44]	chr3	169856	18	UTR3	UTR3:EXON_MRNA	EPM2AIP1	ENSG00000178567.8	ENST00000322716.8:ENST00000623924.1	protein_coding	protein_coding	protein_coding	protein_coding	22	165	2	1.56519	1.615175	1.66516	0.0114991	0.00579158	0.0889104	0.068458
chr7	107196745	107196839	3378648	0	+	0.446809	(0.44,0.476]	chr7	316367	5	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	HBP1	ENSG00000105856.14	ENST00000468410.5:ENST00000222574.9:ENST00000485846.5:ENST00000463202.5:ENST00000498408.1:ENST00000461963.1:ENST00000607681.1:ENST00000463790.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	80	2	1.36075	1.61517	1.86959	0.0389168	0.0176166	0.160783	0.105146
chr3	33670502	33670602	1653526	0	-	0.38	(0.378,0.408]	chr3	169658	66	INTRON	INTRON	CLASP2	ENSG00000163539.18	ENST00000399362.8:ENST00000682230.1:ENST00000468888.6:ENST00000359576.9	protein_coding	protein_coding	protein_coding	protein_coding	10	79	2	1.37524	1.6151550000000001	1.85507	0.0610755	0.0109894	0.172411	0.0927187
chr16	70560991	70561091	6385534	0	+	0.4	(0.378,0.408]	chr16	613962	4	SS5_PROX	SS5_PROX:INTRON	SF3B3	ENSG00000189091.13	ENST00000302516.10:ENST00000568539.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	63	2	1.33751	1.6150099999999998	1.89251	0.0677318	0.0251428	0.18426	0.133404
chr5	54071130	54071229	2618517	0	-	0.343434	(0.32,0.35]	chr5	248837	230	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	14	119	2	1.29192	1.614255	1.93659	0.0384161	0.0108167	0.158985	0.087129
chr5	181054141	181054238	2562978	0	+	0.42268	(0.408,0.44]	chr5	245205	7	UTR3	UTR3:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	BTNL9	ENSG00000165810.17	ENST00000376841.6:ENST00000491209.5:ENST00000327705.14:ENST00000511056.1:ENST00000506782.1:ENST00000512570.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	14	96	2	1.22006	1.6142400000000001	2.00842	0.0414473	0.0108512	0.161692	0.0873034
chr14	101819756	101819851	5819082	0	+	0.536842	(0.515,0.57]	chr14	551846	8	EXON_LNCRNA	EXON_LNCRNA:INTRON	PPP2R5C	ENSG00000078304.20	ENST00000694906.1:ENST00000422945.6:ENST00000554442.5:ENST00000556068.5:ENST00000328724.9:ENST00000554504.1:ENST00000553890.1:ENST00000350249.7:ENST00000557621.5:ENST00000556946.1:ENST00000556307.5:ENST00000553730.5:ENST00000557714.1:ENST00000334743.9:ENST00000445439.7:ENST00000557095.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	15	95	2	1.53025	1.6142150000000002	1.69818	0.0216707	0.00800724	0.11491	0.0801591
chr12	112084705	112084804	5415182	0	-	0.494949	(0.476,0.515]	chr12	517230	32	INTRON	INTRON	NAA25	ENSG00000111300.10	ENST00000261745.9:ENST00000552527.5:ENST00000549711.5:ENST00000551858.1:ENST00000547133.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	59	2	1.43644	1.614155	1.79187	0.047372	0.0362169	0.169265	0.138959
chr19	57292907	57293004	7103656	0	+	0.340206	(0.32,0.35]	chr19	712862	8	UTR3	UTR3:EXON_MRNA	ZNF460	ENSG00000197714.9	ENST00000360338.4	protein_coding	protein_coding	protein_coding	protein_coding	13	112	2	1.45623	1.6139000000000001	1.77157	0.0247853	0.0193154	0.131909	0.108861
chr2	26061274	26061374	713371	0	+	0.47	(0.44,0.476]	chr2	82440	186	INTRON	INTRON	RAB10	ENSG00000084733.11	ENST00000264710.5:ENST00000495146.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	70	2	1.32393	1.61387	1.90381	0.0439888	0.0260626	0.162255	0.122153
chr16	89973363	89973461	6423291	0	+	0.428571	(0.408,0.44]	chr16	616988	2	INTRON	INTRON	AFG3L1P	ENSG00000223959.9	ENST00000429663.6:ENST00000418696.5:ENST00000690928.1:ENST00000431757.5:ENST00000450026.1:ENST00000436447.5:ENST00000457926.5:ENST00000688932.1:ENST00000423742.1:ENST00000685584.1:ENST00000437774.5:ENST00000557444.5:ENST00000421164.5	transcribed_unitary_pseudogene	retained_intron	transcribed_unitary_pseudogene	retained_intron:processed_transcript:transcribed_unitary_pseudogene	12	84	2	1.14396	1.6138599999999999	2.08376	0.0646856	0.0129886	0.179192	0.0991656
chr17	18208396	18208493	6568075	0	+	0.505155	(0.476,0.515]	chr17	638470	1	UTR3	UTR3:EXON_MRNA	ALKBH5	ENSG00000091542.9	ENST00000541285.1:ENST00000399138.5:ENST00000490106.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	12	85	2	1.36548	1.61365	1.86182	0.0323763	0.0178986	0.145026	0.106365
chr18	9103856	9103933	6868600	0	+	0.363636	(0.35,0.378]	chr18	680498	1	SS5_PROX	SS5_PROX:INTRON	NDUFV2	ENSG00000178127.13	ENST00000577703.1:ENST00000318388.11:ENST00000583375.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	16	125	2	1.56881	1.61361	1.65841	0.047622	0.00560694	0.153019	0.0678837
chr6	7115090	7115190	2798436	0	+	0.51	(0.476,0.515]	chr6	263723	60	INTRON	INTRON	RREB1	ENSG00000124782.21	ENST00000379933.7:ENST00000491191.5:ENST00000471433.5:ENST00000379938.7:ENST00000467782.5:ENST00000349384.10:ENST00000334984.10:ENST00000475946.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	54	2	1.54629	1.613605	1.68092	0.0484352	0.0474026	0.169265	0.153635
chr2	20339640	20339740	1076675	0	-	0.5	(0.476,0.515]	chr2	115047	62	INTRON	INTRON	PUM2	ENSG00000055917.16	ENST00000361078.7:ENST00000442400.5:ENST00000420234.5:ENST00000429419.6:ENST00000432105.5:ENST00000446940.5:ENST00000424110.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	53	2	1.53534	1.6133600000000001	1.69138	0.0481165	0.0476737	0.170116	0.153019
chr8	140983141	140983241	4079896	0	-	0.49	(0.476,0.515]	chr8	370582	285	INTRON	INTRON	PTK2	ENSG00000169398.20	ENST00000696786.1:ENST00000522684.5:ENST00000395218.3:ENST00000521059.5:ENST00000519993.5:ENST00000340930.7:ENST00000524357.5:ENST00000521791.5:ENST00000523067.5:ENST00000520828.5:ENST00000519881.5:ENST00000520892.5:ENST00000523803.5:ENST00000521907.5:ENST00000517453.5:ENST00000520045.5:ENST00000521332.5:ENST00000524040.5:ENST00000523679.1:ENST00000524257.5:ENST00000523797.1:ENST00000519635.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	53	2	1.53534	1.6133600000000001	1.69138	0.0481165	0.0476737	0.170116	0.153019
chr2	58193575	58193669	1126264	0	-	0.351064	(0.35,0.378]	chr2	120911	3	UTR3	UTR3:EXON_MRNA:INTRON	FANCL	ENSG00000115392.13	ENST00000696400.1:ENST00000403295.8:ENST00000696492.1:ENST00000427708.7:ENST00000696314.1:ENST00000696315.1:ENST00000696454.1:ENST00000696508.1:ENST00000696548.1:ENST00000696542.1:ENST00000696432.1:ENST00000696319.1:ENST00000403676.6:ENST00000696433.1:ENST00000696434.1:ENST00000696499.1:ENST00000696564.1:ENST00000402135.8:ENST00000696546.1:ENST00000233741.9:ENST00000696316.1:ENST00000696378.1:ENST00000696435.1:ENST00000696493.1:ENST00000696543.1:ENST00000696544.1:ENST00000696545.1:ENST00000696565.1:ENST00000696620.1:ENST00000696621.1:ENST00000696635.1:ENST00000696364.1:ENST00000696634.1:ENST00000696317.1:ENST00000696622.1:ENST00000696467.1:ENST00000696547.1:ENST00000449070.6:ENST00000696305.1:ENST00000417361.2:ENST00000696338.1:ENST00000696361.1:ENST00000696318.1:ENST00000696371.1:ENST00000696409.1:ENST00000696410.1:ENST00000696455.1:ENST00000696468.1:ENST00000696527.1:ENST00000696567.1:ENST00000696324.1:ENST00000696566.1:ENST00000696623.1:ENST00000446381.6:ENST00000696469.1:ENST00000696624.1:ENST00000696411.1:ENST00000696475.1:ENST00000470506.2:ENST00000696358.1:ENST00000696373.1:ENST00000696394.1:ENST00000696320.1:ENST00000696339.1:ENST00000696395.1:ENST00000696341.1:ENST00000696340.1:ENST00000696374.1:ENST00000696396.1:ENST00000696342.1:ENST00000696325.1:ENST00000696399.1:ENST00000696398.1:ENST00000696306.1:ENST00000696397.1:ENST00000696360.1:ENST00000696344.1:ENST00000696343.1:ENST00000696637.1:ENST00000696362.1:ENST00000696528.1:ENST00000696497.1:ENST00000696326.1:ENST00000696638.1:ENST00000696625.1:ENST00000696510.1:ENST00000696438.1:ENST00000696496.1:ENST00000696509.1:ENST00000696569.1:ENST00000696457.1:ENST00000696458.1:ENST00000696473.1:ENST00000696495.1:ENST00000696415.1:ENST00000696472.1:ENST00000696494.1:ENST00000696363.1:ENST00000696414.1:ENST00000696459.1:ENST00000696498.1:ENST00000696416.1:ENST00000696530.1:ENST00000696460.1:ENST00000696570.1:ENST00000696531.1:ENST00000696307.1:ENST00000696401.1:ENST00000696345.1:ENST00000696377.1:ENST00000696417.1:ENST00000696594.1:ENST00000696595.1:ENST00000696379.1:ENST00000696346.1:ENST00000696380.1:ENST00000696347.1:ENST00000696461.1:ENST00000696596.1:ENST00000696549.1:ENST00000696597.1:ENST00000696550.1:ENST00000696598.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	67	2	1.44934	1.61335	1.77736	0.0658369	0.0225073	0.181518	0.124921
chr2	222935187	222935285	1021983	0	+	0.418367	(0.408,0.44]	chr2	109357	1	INTRON	INTRON	ACSL3	ENSG00000123983.15	ENST00000392066.7:ENST00000407441.5:ENST00000680251.1:ENST00000679541.1:ENST00000681906.1:ENST00000679545.1:ENST00000679932.1:ENST00000680100.1:ENST00000680475.1:ENST00000680525.1:ENST00000680420.1:ENST00000681326.1:ENST00000681292.1:ENST00000680395.1:ENST00000680736.1:ENST00000680147.1:ENST00000357430.8:ENST00000681009.1:ENST00000679514.1:ENST00000681697.1:ENST00000680921.1:ENST00000681383.1:ENST00000679558.1:ENST00000680684.1:ENST00000680424.1:ENST00000495541.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	84	2	1.35739	1.6133250000000001	1.86926	0.063317	0.00709955	0.177047	0.0755905
chr1	31287160	31287260	413194	0	-	0.3	(0.28,0.32]	chr1	49797	48	INTRON	INTRON	SNRNP40	ENSG00000060688.13	ENST00000263694.9:ENST00000474025.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	110	2	1.35798	1.61328	1.86858	0.0366052	0.0214814	0.154143	0.114341
chr3	37284240	37284338	1396167	0	+	0.469388	(0.44,0.476]	chr3	146339	16	INTRON	INTRON	GOLGA4	ENSG00000144674.17	ENST00000435830.6:ENST00000444882.5:ENST00000356847.8:ENST00000450863.6:ENST00000361924.7:ENST00000429018.5:ENST00000419177.3:ENST00000437131.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	25	182	2	1.33701	1.613275	1.88954	0.0166401	0.00308121	0.110511	0.0496527
chr15	65775468	65775567	6209628	0	-	0.474747	(0.44,0.476]	chr15	592617	82	INTRON	INTRON	DENND4A	ENSG00000174485.16	ENST00000443035.8:ENST00000431932.6:ENST00000564674.5:ENST00000568515.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	68	2	1.54104	1.613245	1.68545	0.0339289	0.0322071	0.146815	0.132543
chr9	92293605	92293688	4287352	0	-	0.674699	(0.57,1]	chr9	394281	3	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	IARS1	ENSG00000196305.19	ENST00000375643.7:ENST00000443024.7:ENST00000447699.7:ENST00000683537.1:ENST00000684726.1:ENST00000683192.1:ENST00000683565.1:ENST00000682756.1:ENST00000684542.1:ENST00000683793.1:ENST00000683817.1:ENST00000682141.1:ENST00000682893.1:ENST00000684557.1:ENST00000498025.2:ENST00000682156.1:ENST00000627121.3:ENST00000683469.1:ENST00000683495.1:ENST00000682578.1:ENST00000682533.1:ENST00000472894.2:ENST00000684757.1:ENST00000684445.1:ENST00000683376.1:ENST00000683679.1:ENST00000683119.1:ENST00000490438.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	49	2	1.17344	1.6131950000000002	2.05295	0.0618602	0.00415403	0.193604	0.0568824
chr11	65501159	65501258	4806155	0	+	0.424242	(0.408,0.44]	chr11	446569	36	EXON_LNCRNA	EXON_LNCRNA	MALAT1	ENSG00000251562.9	ENST00000619449.2:ENST00000534336.1	lncRNA	lncRNA	lncRNA	lncRNA	2534	18485	2	1.50627	1.6129850000000001	1.7197	0.0019243	2.22141e-4	0.0397031	0.0130986
chr14	103680242	103680341	5828170	0	+	0.272727	[0,0.28]	chr14	553120	3	INTRON	INTRON	KLC1	ENSG00000126214.22	ENST00000348520.10:ENST00000380038.7:ENST00000334553.11:ENST00000389744.8:ENST00000555836.5:ENST00000347839.10:ENST00000553286.5:ENST00000557575.5:ENST00000452929.6:ENST00000554280.5:ENST00000557450.5:ENST00000554228.5:ENST00000634686.1:ENST00000246489.11:ENST00000445352.8:ENST00000537046.6:ENST00000553325.5:ENST00000555856.1:ENST00000535194.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	22	239	2	1.57918	1.61293	1.64668	0.0175188	0.0101786	0.105002	0.089002
chr22	23184031	23184131	7483238	0	+	0.4	(0.378,0.408]	chr22	763531	14	INTRON	INTRON	BCR	ENSG00000186716.21	ENST00000479188.5:ENST00000359540.7:ENST00000305877.13	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	30	230	2	1.40445	1.6129	1.82135	0.0129084	0.00275995	0.0927913	0.0486574
chr19	11926372	11926472	7019766	0	+	0.5	(0.476,0.515]	chr19	697884	7	INTRON	INTRON	ZNF700	ENSG00000196757.8	ENST00000622593.4:ENST00000254321.10	protein_coding	protein_coding	protein_coding	protein_coding	9	68	2	1.43644	1.6128049999999998	1.78917	0.047372	0.022887	0.169265	0.118056
chr6	147763145	147763245	2991630	0	+	0.47	(0.44,0.476]	chr6	280177	257	INTRON	INTRON	ENSG00000227681	ENSG00000227681.5	ENST00000427015.1	lncRNA	lncRNA	lncRNA	lncRNA	11	83	2	1.47888	1.61266	1.74644	0.0349698	0.0165016	0.13747500000000001	0.110334
chr1	212898270	212898369	310252	0	+	0.343434	(0.32,0.35]	chr1	35838	31	UTR3	UTR3:EXON_MRNA	FLVCR1	ENSG00000162769.13	ENST00000366971.9	protein_coding	protein_coding	protein_coding	protein_coding	9	80	2	1.60939	1.61265	1.61591	0.0439266	0.0277247	0.14937	0.137011
chr19	28488558	28488657	7165980	0	-	0.434343	(0.408,0.44]	chr19	724189	203	INTRON	INTRON	ENSG00000283403:ENSG00000267243	ENSG00000283403.1:ENSG00000267243.6	ENST00000592347.5:ENST00000593065.5	lncRNA	lncRNA	lncRNA	lncRNA	13	98	2	1.59687	1.612595	1.62832	0.0212908	0.0164598	0.113423	0.110142
chr20	38423187	38423282	7342182	0	-	0.494737	(0.476,0.515]	chr20	748300	11	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	SNHG17	ENSG00000196756.14	ENST00000654008.2:ENST00000658076.1:ENST00000662982.2:ENST00000456953.7:ENST00000654183.2:ENST00000663540.2:ENST00000651115.2:ENST00000667835.1:ENST00000660885.2:ENST00000662213.1:ENST00000665233.2:ENST00000666268.2:ENST00000665735.1:ENST00000660558.2:ENST00000691280.1:ENST00000658488.2:ENST00000688336.1:ENST00000668054.2:ENST00000690441.1:ENST00000655520.2:ENST00000687490.1:ENST00000664626.1:ENST00000658051.1:ENST00000668042.1:ENST00000686971.1:ENST00000663187.1:ENST00000669114.1:ENST00000653343.1:ENST00000666225.1:ENST00000659186.1:ENST00000671309.1:ENST00000669405.1:ENST00000666806.1:ENST00000657665.1:ENST00000657868.1:ENST00000663534.1:ENST00000658141.1:ENST00000689917.1:ENST00000664073.2:ENST00000653697.1:ENST00000656320.1:ENST00000686814.1:ENST00000417578.7:ENST00000654853.1:ENST00000665440.1:ENST00000659102.1:ENST00000436764.7:ENST00000668482.2:ENST00000671249.1:ENST00000655692.1:ENST00000662568.1:ENST00000659255.1:ENST00000665693.1:ENST00000693250.1:ENST00000691368.1:ENST00000693227.1:ENST00000690361.1:ENST00000670051.1:ENST00000667912.1:ENST00000693665.1:ENST00000665181.1:ENST00000687532.1:ENST00000691386.1:ENST00000693684.1:ENST00000666331.1:ENST00000669480.1:ENST00000658905.1:ENST00000661252.1:ENST00000669137.1:ENST00000688133.1:ENST00000689414.1:ENST00000691314.1:ENST00000669033.1:ENST00000686145.1:ENST00000653938.1:ENST00000663784.1:ENST00000665003.1:ENST00000659400.1:ENST00000653753.1:ENST00000449469.5:ENST00000654389.1:ENST00000657429.1:ENST00000667412.1:ENST00000654092.1:ENST00000653277.1:ENST00000663955.1:ENST00000656023.1:ENST00000692262.1:ENST00000414142.5:ENST00000659753.1:ENST00000670958.1:ENST00000657216.2:ENST00000664636.1:ENST00000657843.1:ENST00000660189.1:ENST00000660064.1:ENST00000655198.1:ENST00000662572.1:ENST00000423536.6:ENST00000658455.1:ENST00000666419.1:ENST00000413755.5	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	15	110	2	1.29349	1.6124450000000001	1.9314	0.0361705	0.00643736	0.152712	0.0697513
chr20	47251133	47251233	7348444	0	-	0.41	(0.408,0.44]	chr20	749282	13	INTRON	INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000467200.6:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000468376.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	86	2	1.54273	1.61238	1.68203	0.0337312	0.0175685	0.146709	0.105143
chr7	873802	873896	3269077	0	+	0.393617	(0.378,0.408]	chr7	303663	6	UTR3	UTR3:EXON_MRNA:INTRON	SUN1	ENSG00000164828.18	ENST00000452783.6:ENST00000389574.7:ENST00000401592.6:ENST00000413171.6:ENST00000405266.5:ENST00000425407.6:ENST00000429178.5:ENST00000433212.5:ENST00000457861.1:ENST00000475971.5:ENST00000497943.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	14	105	2	1.29896	1.612375	1.92579	0.0356853	0.00998976	0.151833	0.0843858
chr5	66078921	66079019	2372404	0	+	0.346939	(0.32,0.35]	chr5	228636	5	UTR3	UTR3:EXON_MRNA	ERBIN	ENSG00000112851.15	ENST00000380943.6:ENST00000380935.5:ENST00000284037.10:ENST00000380938.6:ENST00000508515.1	protein_coding	protein_coding	protein_coding	protein_coding	11	95	2	1.22414	1.61225	2.00036	0.0625148	0.012813	0.195535	0.0926667
chr9	124724407	124724507	4348746	0	-	0.34	(0.32,0.35]	chr9	399255	1287	INTRON	INTRON	NR6A1	ENSG00000148200.17	ENST00000487099.7:ENST00000373584.7:ENST00000416460.6:ENST00000344523.8	protein_coding	protein_coding	protein_coding	protein_coding	12	106	2	1.35626	1.6122100000000001	1.86816	0.0414162	0.0138355	0.161578	0.0952812
chr1	40223010	40223110	80586	0	+	0.36	(0.35,0.378]	chr1	10436	3	SS5_PROX	SS5_PROX:INTRON	RLF	ENSG00000117000.9	ENST00000372771.5	protein_coding	protein_coding	protein_coding	protein_coding	12	99	2	1.40928	1.6122	1.81512	0.0566272	0.00699907	0.167395	0.0754576
chr1	8780013	8780113	373408	0	-	0.4	(0.378,0.408]	chr1	43549	263	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000656437.1:ENST00000659924.1	protein_coding	protein_coding	protein_coding	protein_coding	10	80	2	1.54765	1.6121349999999999	1.67662	0.0334147	0.0243251	0.146709	0.12011
chr8	11804704	11804802	3702541	0	+	0.520408	(0.515,0.57]	chr8	343487	8	INTRON	INTRON	FDFT1	ENSG00000079459.13	ENST00000538689.4:ENST00000615631.4:ENST00000618539.4:ENST00000530337.5:ENST00000623368.3:ENST00000446331.6:ENST00000443614.6:ENST00000220584.9:ENST00000525607.5:ENST00000525283.5:ENST00000529464.5:ENST00000525900.5:ENST00000528812.5:ENST00000622850.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	52	2	1.43029	1.6120700000000001	1.79385	0.0645632	0.0201222	0.179192	0.121243
chr1	1318214	1318306	359498	0	-	0.304348	(0.28,0.32]	chr1	41635	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	INTS11:ENSG00000240731	ENSG00000127054.22:ENSG00000240731.1	ENST00000540437.5:ENST00000545578.5:ENST00000620829.4:ENST00000435064.6:ENST00000323275.10:ENST00000411962.5:ENST00000419704.5:ENST00000458452.7:ENST00000421495.6:ENST00000532772.5:ENST00000450926.6:ENST00000527098.5:ENST00000528879.5:ENST00000531377.5:ENST00000434694.6:ENST00000488042.6:ENST00000526797.5:ENST00000526332.5:ENST00000430786.5:ENST00000527719.5:ENST00000530031.5:ENST00000526113.1:ENST00000526904.5:ENST00000525603.1:ENST00000444968.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA	31	277	2	1.37615	1.611985	1.84782	0.0123935	0.00581771	0.0973643	0.066578
chr2	167851317	167851417	1258313	0	-	0.3	(0.28,0.32]	chr2	133322	357	INTRON	INTRON	B3GALT1-AS1	ENSG00000235335.3	ENST00000430546.2:ENST00000657553.1:ENST00000670221.1:ENST00000436982.2	lncRNA	lncRNA	lncRNA	lncRNA	8	82	2	1.61031	1.611895	1.61348	0.0600513	0.0342608	0.190658	0.135561
chr5	91370904	91371003	2674857	0	-	0.343434	(0.32,0.35]	chr5	253079	24	UTR3	UTR3:EXON_MRNA	ARRDC3	ENSG00000113369.9	ENST00000265138.4:ENST00000511391.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	19	165	2	1.50947	1.61171	1.71395	0.0248039	0.00534871	0.12011	0.0663076
chr10	73007764	73007855	4646939	0	-	0.384615	(0.378,0.408]	chr10	427466	7	UTR3	UTR3:EXON_MRNA	P4HA1	ENSG00000122884.13	ENST00000394890.7:ENST00000307116.6:ENST00000373008.6:ENST00000440381.5:ENST00000263556.3	protein_coding	protein_coding	protein_coding	protein_coding	12	93	2	1.29968	1.6111849999999999	1.92269	0.0525236	0.00836891	0.160753	0.0822143
chr1	47308481	47308580	446055	0	-	0.363636	(0.35,0.378]	chr1	54067	31	INTRON	INTRON	STIL	ENSG00000123473.17	ENST00000360380.7:ENST00000371877.8:ENST00000337817.10:ENST00000682977.1:ENST00000396221.6:ENST00000447475.7:ENST00000436811.2	protein_coding	protein_coding	protein_coding	protein_coding	6	51	2	1.5118	1.6111300000000002	1.71046	0.0789277	0.0441269	0.198963	0.162255
chr7	32501389	32501488	3303292	0	+	0.30303	(0.28,0.32]	chr7	306758	52	INTRON	INTRON	AVL9	ENSG00000105778.20	ENST00000485228.1:ENST00000318709.9:ENST00000459629.1:ENST00000409301.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	14	123	2	1.30127	1.61079	1.92031	0.0347399	0.0182101	0.148375	0.107833
chr2	15529343	15529443	1072842	0	-	0.59	(0.57,1]	chr2	114441	176	INTRON	INTRON	NBAS	ENSG00000151779.13	ENST00000281513.10	protein_coding	protein_coding	protein_coding	protein_coding	9	35	2	1.2666	1.61072	1.95484	0.0788045	0.0113205	0.198736	0.0948452
chr3	10143121	10143221	1363127	0	+	0.53	(0.515,0.57]	chr3	143670	1	SS5_PROX	SS5_PROX:INTRON	VHL	ENSG00000134086.9	ENST00000696153.1:ENST00000256474.3:ENST00000696142.1:ENST00000345392.2:ENST00000696143.1:ENST00000477538.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	21	130	2	1.57348	1.6107	1.64792	0.0149632	0.00423974	0.0994339	0.0595557
chr19	5710595	5710692	7124614	0	-	0.484536	(0.476,0.515]	chr19	717144	18	INTRON	INTRON	LONP1	ENSG00000196365.12	ENST00000360614.8:ENST00000587552.5:ENST00000540670.6:ENST00000593119.5:ENST00000585374.5:ENST00000590558.5:ENST00000590729.5:ENST00000587365.1:ENST00000586617.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	22	156	2	1.01749	1.61069	2.20389	0.0662098	7.08867e-4	0.181924	0.0242289
chr5	127014330	127014430	2714396	0	-	0.34	(0.32,0.35]	chr5	255278	676	INTRON	INTRON	MARCHF3	ENSG00000173926.6	ENST00000308660.6:ENST00000502289.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	89	2	1.46679	1.6105800000000001	1.75437	0.0497695	0.017109	0.156383	0.110916
chr16	85576643	85576742	6415598	0	+	0.434343	(0.408,0.44]	chr16	615470	199	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	25	188	2	1.60379	1.6105749999999999	1.61736	0.00784081	0.0063119	0.0761334	0.0722266
chr17	42200062	42200161	6771440	0	-	0.363636	(0.35,0.378]	chr17	666876	10	UTR3	UTR3:EXON_MRNA	STAT5B	ENSG00000173757.10	ENST00000293328.8	protein_coding	protein_coding	protein_coding	protein_coding	28	221	2	1.25882	1.610565	1.96231	0.0257318	0.00171638	0.120818	0.0382156
chr17	81588187	81588287	6849101	0	-	0.46	(0.44,0.476]	chr17	678160	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	NPLOC4	ENSG00000182446.14	ENST00000331134.11:ENST00000374747.9:ENST00000574897.5:ENST00000572351.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	50	2	1.44993	1.6104699999999998	1.77101	0.0693975	0.045367	0.184298	0.164236
chr21	39312562	39312654	7465533	0	-	0.771739	(0.57,1]	chr21	760570	1	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	BRWD1	ENSG00000185658.14	ENST00000333229.6:ENST00000342449.8:ENST00000380800.7:ENST00000341322.4:ENST00000470108.5:ENST00000484090.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	15	56	2	1.31372	1.610465	1.90721	0.0324847	0.00529133	0.145164	0.0636343
chr5	139303751	139303850	2499481	0	+	0.232323	[0,0.28]	chr5	238913	39	INTRON	INTRON	MATR3	ENSG00000280987.4:ENSG00000015479.20	ENST00000509990.5:ENST00000506147.5:ENST00000512107.5:ENST00000361059.7:ENST00000394800.6:ENST00000502929.5:ENST00000504203.5:ENST00000514694.5:ENST00000509644.5:ENST00000505016.2:ENST00000502394.1:ENST00000512876.5:ENST00000513678.5:ENST00000513121.1:ENST00000504045.5:ENST00000504311.5:ENST00000502499.5:ENST00000510056.5:ENST00000511249.5:ENST00000394805.8:ENST00000507860.1:ENST00000509918.5:ENST00000503811.5:ENST00000511978.5:ENST00000618441.5:ENST00000508689.1:ENST00000514528.5:ENST00000504643.5:ENST00000514488.1:ENST00000503340.1:ENST00000504023.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	13	135	2	1.43221	1.6103999999999998	1.78859	0.0307903	0.0271677	0.136451	0.13151
chr16	16501118	16501218	6310873	0	+	0.49	(0.476,0.515]	chr16	604098	11	INTRON	INTRON	ENSG00000260126	ENSG00000260126.2	ENST00000567465.2	lncRNA	lncRNA	lncRNA	lncRNA	15	120	2	1.48272	1.6096300000000001	1.73654	0.0410274	0.00606633	0.161534	0.0676501
chr1	30940455	30940552	411613	0	-	0.371134	(0.35,0.378]	chr1	49613	33	INTRON	INTRON	PUM1	ENSG00000134644.16	ENST00000426105.7:ENST00000373747.7:ENST00000257075.9:ENST00000424085.6:ENST00000525843.5:ENST00000440538.6:ENST00000498419.5:ENST00000373741.8:ENST00000373742.6:ENST00000530669.1:ENST00000529846.5:ENST00000525997.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	65	2	1.55918	1.60954	1.6599	0.0545616	0.0326427	0.165292	0.145164
chr1	28508829	28508905	57201	0	+	0.394737	(0.378,0.408]	chr1	7387	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	RCC1:SNHG3	ENSG00000180198.17:ENSG00000242125.3	ENST00000398958.6:ENST00000649185.1:ENST00000413987.1:ENST00000427469.5:ENST00000683442.1:ENST00000434290.6:ENST00000373833.10:ENST00000437681.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	50	385	2	1.53834	1.6093549999999999	1.68037	0.00343754	0.00287016	0.0539802	0.0474836
chr1	93082416	93082515	162570	0	+	0.414141	(0.408,0.44]	chr1	17567	10	INTRON	INTRON	MTF2	ENSG00000143033.18	ENST00000540243.5:ENST00000545708.5:ENST00000474314.6:ENST00000370298.9:ENST00000473430.5:ENST00000494963.5:ENST00000471953.5:ENST00000370303.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	47	2	1.58763	1.609115	1.6306	0.0639217	0.0544158	0.182272	0.177824
chr16	4471549	4471649	6437592	0	-	0.43	(0.408,0.44]	chr16	619908	1	SS3_PROX	SS3_PROX:INTRON	NMRAL1	ENSG00000153406.14	ENST00000574733.5:ENST00000283429.11:ENST00000404295.7:ENST00000574425.5:ENST00000571291.5:ENST00000573520.5:ENST00000573571.1:ENST00000575002.5:ENST00000575557.5:ENST00000576935.5:ENST00000575995.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	47	2	1.58763	1.609115	1.6306	0.0639217	0.0544158	0.182272	0.177824
chr16	21878737	21878837	6462031	0	-	0.36	(0.35,0.378]	chr16	623467	126	INTRON	INTRON	NPIPB4	ENSG00000185864.18	ENST00000543449.1:ENST00000538859.1	protein_coding	processed_transcript	protein_coding	processed_transcript	11	91	2	1.49914	1.609105	1.71907	0.0306686	0.0218101	0.143385	0.11491
chr22	16612393	16612487	7473465	0	+	0.542553	(0.515,0.57]	chr22	761978	1	INTRON	INTRON	TPTEP1:ENSG00000283633	ENSG00000100181.22:ENSG00000283633.1	ENST00000558085.6:ENST00000400593.6:ENST00000592918.5:ENST00000592107.5:ENST00000426585.5:ENST00000591299.1	lncRNA	lncRNA	lncRNA:transcribed_unprocessed_pseudogene	lncRNA:processed_transcript	8	52	2	1.37301	1.60906	1.84511	0.0752392	0.0167182	0.193891	0.110511
chr11	66648839	66648938	4811136	0	+	0.363636	(0.35,0.378]	chr11	447908	25	INTRON	INTRON	RBM4	ENSG00000173933.21	ENST00000396053.9:ENST00000578778.5:ENST00000506523.6	protein_coding	protein_coding	protein_coding	protein_coding	15	124	2	1.55842	1.608985	1.65955	0.0195852	0.0133768	0.109486	0.10089
chr12	124779884	124779984	5445725	0	-	0.63	(0.57,1]	chr12	521214	9	INTRON	INTRON	SCARB1	ENSG00000073060.17	ENST00000339570.9:ENST00000261693.11:ENST00000679605.1:ENST00000681686.1:ENST00000680926.1:ENST00000680556.1:ENST00000680982.1:ENST00000680596.1:ENST00000681555.1:ENST00000681788.1:ENST00000415380.6:ENST00000681117.1:ENST00000681499.1:ENST00000545305.1:ENST00000538291.5:ENST00000546215.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	21	79	2	1.4907	1.60897	1.72724	0.0154472	0.00272515	0.100909	0.0482065
chr11	86007883	86007983	5014219	0	-	0.27	[0,0.28]	chr11	472975	3	SS3_PROX	SS3_PROX:INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000630913.2:ENST00000528398.5:ENST00000356360.9:ENST00000534412.5:ENST00000531771.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	25	270	2	1.59175	1.608835	1.62592	0.0189201	0.00708503	0.108861	0.0754923
chr3	10045041	10045138	1362380	0	+	0.340206	(0.32,0.35]	chr3	143486	8	INTRON	INTRON	FANCD2	ENSG00000144554.13	ENST00000682647.1:ENST00000287647.7:ENST00000676013.1:ENST00000675286.1:ENST00000419585.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	21	183	2	1.4879	1.608835	1.72977	0.0206713	0.00496922	0.110999	0.0646039
chr1	52864945	52865041	105132	0	+	0.416667	(0.408,0.44]	chr1	13746	4	INTRON	INTRON	ZYG11A	ENSG00000203995.10	ENST00000371532.5:ENST00000612017.4:ENST00000371528.2	protein_coding	protein_coding	protein_coding	protein_coding	9	65	2	1.3378	1.6087850000000001	1.87977	0.050805	0.0282738	0.175989	0.125825
chr2	38594928	38595027	1099698	0	-	0.383838	(0.378,0.408]	chr2	117957	29	INTRON	INTRON	HNRNPLL	ENSG00000143889.16	ENST00000449105.8:ENST00000409636.5:ENST00000358367.8:ENST00000608859.5:ENST00000378915.7:ENST00000409328.5:ENST00000410076.5:ENST00000425682.1:ENST00000498516.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	102	2	1.5109	1.6087799999999999	1.70666	0.0265396	0.0140577	0.12286	0.102916
chr7	4698959	4699059	3270082	0	+	0.59	(0.57,1]	chr7	303884	157	INTRON	INTRON	FOXK1	ENSG00000164916.11	ENST00000328914.5	protein_coding	protein_coding	protein_coding	protein_coding	10	38	2	1.49341	1.6087349999999998	1.72406	0.0307286	0.0261443	0.143385	0.122221
chr3	17730044	17730144	1630308	0	-	0.4	(0.378,0.408]	chr3	168275	278	INTRON	INTRON	TBC1D5	ENSG00000131374.15	ENST00000253692.11:ENST00000696125.1:ENST00000414318.2:ENST00000429383.8:ENST00000415814.6:ENST00000452492.6:ENST00000412981.5:ENST00000428355.5:ENST00000425944.5:ENST00000430169.5:ENST00000445294.5:ENST00000414349.5:ENST00000443499.6:ENST00000444756.5:ENST00000497531.5:ENST00000443386.5:ENST00000446863.5:ENST00000444471.5:ENST00000481396.5:ENST00000423331.6:ENST00000485432.1:ENST00000471679.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	46	2	1.45712	1.60872	1.76032	0.0721577	0.0597975	0.189982	0.187433
chr1	111179504	111179603	184127	0	+	0.444444	(0.44,0.476]	chr1	20443	14	EXON_LNCRNA	EXON_LNCRNA:INTRON	CEPT1	ENSG00000134255.15	ENST00000545121.5:ENST00000498239.5:ENST00000357172.9:ENST00000478042.5:ENST00000473474.5:ENST00000467362.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	90	2	1.34977	1.60866	1.86755	0.0522828	0.00715715	0.160182	0.0756118
chr21	46268352	46268448	7471249	0	-	0.489583	(0.476,0.515]	chr21	761661	4	INTRON	INTRON	MCM3AP	ENSG00000160294.11	ENST00000397708.1:ENST00000291688.6	protein_coding	protein_coding	protein_coding	protein_coding	10	75	2	1.4095	1.608525	1.80755	0.054012	0.0131326	0.16443	0.0999551
chr22	21784661	21784761	7560550	0	-	0.27	[0,0.28]	chr22	773360	113	INTRON	INTRON	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	34	343	2	1.38463	1.60843	1.83223	0.0128744	0.0079815	0.0990564	0.076611
chr3	197951328	197951412	1598741	0	+	0.428571	(0.408,0.44]	chr3	165705	1	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	RPL35A	ENSG00000182899.17	ENST00000647248.2:ENST00000448864.6:ENST00000485439.5:ENST00000642387.1:ENST00000329092.12:ENST00000496582.5:ENST00000429437.5:ENST00000442341.5:ENST00000439255.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	21	158	2	1.51992	1.608215	1.69651	0.0124119	0.00706185	0.0918925	0.0754923
chr1	65283794	65283894	135831	0	+	0.4	(0.378,0.408]	chr1	15346	185	INTRON	INTRON	DNAJC6	ENSG00000116675.16	ENST00000463018.5:ENST00000494710.6:ENST00000263441.11:ENST00000395325.7:ENST00000483402.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	16	123	2	1.5592	1.60815	1.6571	0.0224236	0.00859367	0.11692	0.083729
chr6	17651926	17652026	3065652	0	-	0.53	(0.515,0.57]	chr6	284822	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	NUP153	ENSG00000124789.12	ENST00000613258.4:ENST00000537253.5:ENST00000262077.3	protein_coding	protein_coding	protein_coding	protein_coding	15	95	2	1.24949	1.6081349999999999	1.96678	0.0486249	0.00296583	0.153975	0.0500431
chr1	28506811	28506903	57175	0	+	0.532609	(0.515,0.57]	chr1	7378	6	EXON_MRNA	EXON_MRNA:INTRON	RCC1:SNHG3	ENSG00000180198.17:ENSG00000242125.3	ENST00000398958.6:ENST00000649185.1:ENST00000413987.1:ENST00000427469.5:ENST00000683442.1:ENST00000447507.1:ENST00000434290.6:ENST00000373833.10:ENST00000437681.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	75	484	2	1.42236	1.60811	1.79386	0.00393331	4.95656e-4	0.0572563	0.0206925
chr4	55414588	55414685	1960780	0	+	0.42268	(0.408,0.44]	chr4	196561	20	INTRON	INTRON	TMEM165	ENSG00000134851.13	ENST00000381334.10:ENST00000506198.5:ENST00000508404.5:ENST00000511710.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	11	83	2	1.57433	1.608	1.64167	0.0266976	0.0229059	0.12581	0.123349
chr5	175527898	175527995	2551031	0	+	0.443299	(0.44,0.476]	chr5	243564	13	UTR3	UTR3:EXON_MRNA	SFXN1	ENSG00000164466.13	ENST00000321442.10	protein_coding	protein_coding	protein_coding	protein_coding	33	242	2	1.33246	1.6078700000000001	1.88328	0.0130688	0.00181774	0.0996047	0.0384993
chr16	29527067	29527167	6470836	0	-	0.36	(0.35,0.378]	chr16	625147	212	INTRON	INTRON	ENSG00000288632	ENSG00000288632.1	ENST00000675579.1	lncRNA	lncRNA	lncRNA	lncRNA	30	241	2	1.47302	1.60782	1.74262	0.00832166	0.00483476	0.0817926	0.060458
chr19	57297510	57297607	7103668	0	+	0.340206	(0.32,0.35]	chr19	712863	1	EXON_LNCRNA	EXON_LNCRNA	ENSG00000288899	ENSG00000288899.1	ENST00000688255.1	lncRNA	lncRNA	lncRNA	lncRNA	20	174	2	1.18886	1.607785	2.02671	0.0518283	0.00169095	0.159306	0.0381936
chr9	128273157	128273253	4358201	0	-	0.4375	(0.408,0.44]	chr9	400433	3	SS3_PROX	SS3_PROX:INTRON	GOLGA2	ENSG00000167110.19	ENST00000421699.8:ENST00000611957.5:ENST00000693185.1:ENST00000686291.1:ENST00000687179.1:ENST00000458730.3:ENST00000693047.1:ENST00000686884.1:ENST00000693180.1:ENST00000691040.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	62	2	1.46762	1.607685	1.74775	0.0735403	0.0267854	0.190238	0.134871
chr2	176317612	176317712	925700	0	+	0.43	(0.408,0.44]	chr2	101688	129	INTRON	INTRON	MTX2	ENSG00000128654.14	ENST00000420864.5:ENST00000249442.11:ENST00000423461.6:ENST00000443241.5:ENST00000452865.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	66	2	1.57433	1.607475	1.64062	0.0557275	0.0229059	0.165463	0.12581
chr12	110283493	110283592	5226120	0	+	0.292929	(0.28,0.32]	chr12	495234	3	INTRON	INTRON	ATP2A2	ENSG00000174437.18	ENST00000552636.2:ENST00000308664.10:ENST00000539276.7:ENST00000377685.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	13	122	2	1.45628	1.60734	1.7584	0.0260726	0.0218117	0.133676	0.11491
chr17	30892697	30892788	6591053	0	+	0.384615	(0.378,0.408]	chr17	641025	2	CDS	CDS:EXON_MRNA	ATAD5	ENSG00000176208.9	ENST00000321990.5	protein_coding	protein_coding	protein_coding	protein_coding	8	62	2	1.58349	1.607175	1.63086	0.0653091	0.0252353	0.180158	0.133676
chr2	167914052	167914152	1258943	0	-	0.42	(0.408,0.44]	chr2	133340	129	INTRON	INTRON	B3GALT1-AS1	ENSG00000235335.3	ENST00000430546.2:ENST00000657553.1:ENST00000670221.1:ENST00000436982.2	lncRNA	lncRNA	lncRNA	lncRNA	22	164	2	1.47398	1.6071	1.74022	0.0149742	0.00477359	0.0994339	0.0636201
chr16	8096522	8096622	6441474	0	-	0.54	(0.515,0.57]	chr16	620351	889	INTRON	INTRON	ENSG00000260289	ENSG00000260289.2	ENST00000670665.1:ENST00000654046.1:ENST00000567103.2	lncRNA	lncRNA	lncRNA	lncRNA	10	63	2	1.27162	1.60705	1.94248	0.0626162	0.0115668	0.175915	0.0962115
chr2	61359062	61359161	1129426	0	-	0.333333	(0.32,0.35]	chr2	121448	80	INTRON	INTRON	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000453133.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	58	2	1.37958	1.60687	1.83416	0.0631198	0.0577841	0.188484	0.176946
chr1	22056202	22056302	42236	0	+	0.42	(0.408,0.44]	chr1	5071	4	SS5_PROX	SS5_PROX:INTRON	ENSG00000289694:CDC42	ENSG00000289694.1:ENSG00000070831.18	ENST00000695855.1:ENST00000695856.1:ENST00000344548.8:ENST00000400259.5:ENST00000667384.2:ENST00000411827.2:ENST00000695858.1:ENST00000695857.1:ENST00000315554.14:ENST00000695859.1:ENST00000498236.1:ENST00000656825.1:ENST00000651171.1:ENST00000652582.1:ENST00000695860.1:ENST00000695796.1:ENST00000695797.1:ENST00000662562.2:ENST00000695798.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	61	2	1.39614	1.606865	1.81759	0.0567929	0.0316273	0.167723	0.144405
chr17	47146657	47146756	6788950	0	-	0.313131	(0.28,0.32]	chr17	669573	23	INTRON	INTRON	CDC27	ENSG00000004897.12	ENST00000066544.8:ENST00000531206.5:ENST00000533415.5:ENST00000527547.5:ENST00000526866.5:ENST00000525495.6:ENST00000574304.5:ENST00000575830.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	76	2	1.38068	1.606855	1.83303	0.0590236	0.0370023	0.189982	0.139194
chr10	92608519	92608619	4490835	0	+	0.5	(0.476,0.515]	chr10	413555	1	SS3_PROX	SS3_PROX:INTRON	KIF11	ENSG00000138160.7	ENST00000676757.1:ENST00000676647.1:ENST00000260731.5:ENST00000676621.1:ENST00000677720.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	65	2	1.5222	1.6067900000000002	1.69138	0.0481165	0.0276881	0.153019	0.137011
chr11	65431560	65431660	4805858	0	+	0.38	(0.378,0.408]	chr11	446554	89	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	129	974	2	1.51782	1.606695	1.69557	0.00341207	5.7107e-4	0.0517761	0.0217398
chr3	152325221	152325321	1535551	0	+	0.37	(0.35,0.378]	chr3	159996	229	INTRON	INTRON	MBNL1	ENSG00000152601.18	ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000495875.6:ENST00000324210.10:ENST00000493459.5:ENST00000459747.1:ENST00000460591.5:ENST00000545754.5:ENST00000357472.7:ENST00000324196.9:ENST00000498502.5:ENST00000463374.5:ENST00000485910.5:ENST00000465907.6:ENST00000492948.5:ENST00000485509.5:ENST00000464596.5	protein_coding	protein_coding	protein_coding	protein_coding	19	144	2	1.17704	1.6066000000000003	2.03616	0.0381961	0.00480774	0.158208	0.0602209
chr6	17673116	17673215	3065870	0	-	0.50505	(0.476,0.515]	chr6	284852	32	INTRON	INTRON	NUP153	ENSG00000124789.12	ENST00000613258.4:ENST00000537253.5:ENST00000262077.3	protein_coding	protein_coding	protein_coding	protein_coding	10	75	2	1.55865	1.606455	1.65426	0.034348	0.0231344	0.135807	0.126939
chr5	6738033	6738133	2316082	0	+	0.43	(0.408,0.44]	chr5	224273	4	SS5_PROX	SS5_PROX:INTRON	TENT4A	ENSG00000112941.14	ENST00000230859.8:ENST00000631941.2	protein_coding	protein_coding	protein_coding	protein_coding	10	76	2	1.40374	1.6062349999999999	1.80873	0.0721345	0.00917795	0.187433	0.0855292
chr6	31838211	31838304	2843869	0	+	0.44086	(0.44,0.476]	chr6	267918	4	INTRON	INTRON	SNHG32	ENSG00000204387.14	ENST00000375640.7:ENST00000375641.6:ENST00000375635.6:ENST00000375638.7:ENST00000648677.1:ENST00000375642.6:ENST00000614363.4:ENST00000395789.5:ENST00000375633.5:ENST00000395788.3	lncRNA	lncRNA	lncRNA	lncRNA	19	148	2	1.21833	1.6062249999999998	1.99412	0.0417163	0.00226571	0.161736	0.0425712
chr8	100711189	100711285	4005476	0	-	0.572917	(0.57,1]	chr8	366598	11	INTRON	INTRON	PABPC1	ENSG00000070756.17	ENST00000677140.1:ENST00000677787.1:ENST00000678709.1:ENST00000676662.1:ENST00000677765.1:ENST00000677892.1:ENST00000522720.2:ENST00000520804.2:ENST00000521865.6:ENST00000677478.1:ENST00000677380.1:ENST00000520142.2:ENST00000677775.1:ENST00000678954.1:ENST00000676655.1:ENST00000676976.1:ENST00000678290.1:ENST00000318607.10:ENST00000679197.1:ENST00000519100.6:ENST00000519004.5:ENST00000522387.5:ENST00000523636.5:ENST00000522658.6:ENST00000678822.1:ENST00000523555.6:ENST00000610907.2:ENST00000517403.5:ENST00000519596.5:ENST00000519622.5:ENST00000517921.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	27	106	2	1.0271	1.60609	2.18508	0.0521258	1.46386e-4	0.177083	0.0110659
chr7	23434000	23434100	3503302	0	-	0.43	(0.408,0.44]	chr7	326910	28	INTRON	INTRON	IGF2BP3	ENSG00000136231.14	ENST00000258729.8:ENST00000421467.6:ENST00000468263.5:ENST00000491719.5:ENST00000476938.5:ENST00000468005.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	14	104	2	1.22883	1.60601	1.98319	0.0558195	0.0042785	0.165463	0.0598356
chrX	151972084	151972180	7908614	0	-	0.46875	(0.44,0.476]	chrX	804815	9	EXON_MRNA	EXON_MRNA:INTRON	GABRE	ENSG00000102287.19	ENST00000370328.4:ENST00000441219.5:ENST00000491339.1:ENST00000417300.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	23	172	2	1.56481	1.6059100000000002	1.64701	0.00922089	0.00705613	0.0855292	0.071911
chr4	61251	61351	1905369	0	+	0.62	(0.57,1]	chr4	191003	7	INTRON	INTRON	ZNF595	ENSG00000272602.6	ENST00000608255.2:ENST00000609518.5:ENST00000509152.3:ENST00000610261.6	protein_coding	protein_coding	protein_coding	protein_coding	21	78	2	1.37816	1.605815	1.83347	0.0161894	0.00291531	0.109464	0.0480155
chr14	102638809	102638909	5822995	0	+	0.53	(0.515,0.57]	chr14	552490	451	INTRON	INTRON	RCOR1	ENSG00000089902.10	ENST00000262241.7	protein_coding	protein_coding	protein_coding	protein_coding	13	81	2	1.22025	1.605775	1.9913	0.0515133	0.00635972	0.176696	0.069149
chr6	31756295	31756394	2843658	0	+	0.484848	(0.476,0.515]	chr6	267818	23	INTRON	INTRON	MSH5:MSH5-SAPCD1	ENSG00000204410.16:ENSG00000255152.8	ENST00000375755.8:ENST00000375750.9:ENST00000650702.1:ENST00000493662.6:ENST00000375703.7:ENST00000375740.7:ENST00000423982.6:ENST00000463144.5:ENST00000450148.5:ENST00000468602.5:ENST00000468136.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	33	246	2	1.58709	1.605775	1.62446	0.00583016	0.00422337	0.0688064	0.0572185
chr12	103947662	103947756	5208522	0	+	0.393617	(0.378,0.408]	chr12	492975	1	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	HSP90B1	ENSG00000166598.16	ENST00000550595.2:ENST00000681861.1:ENST00000680899.1:ENST00000680391.1:ENST00000680653.1:ENST00000679779.1:ENST00000680281.1:ENST00000681949.1:ENST00000680989.1:ENST00000614327.2:ENST00000680663.1:ENST00000681172.1:ENST00000681941.1:ENST00000681910.1:ENST00000681704.1:ENST00000299767.10:ENST00000681174.1:ENST00000680370.1:ENST00000679538.1:ENST00000681698.1:ENST00000548462.5:ENST00000680316.1:ENST00000679861.1:ENST00000681245.1:ENST00000680478.1:ENST00000552051.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	67	424	2	1.23791	1.605235	1.97256	0.00931644	0.00146258	0.0855529	0.0346348
chr22	20937836	20937936	7480722	0	+	0.35	(0.32,0.35]	chr22	763096	32	INTRON	INTRON	CRKL	ENSG00000099942.13	ENST00000354336.8:ENST00000411769.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	13	114	2	1.27967	1.604945	1.93022	0.0591737	0.00608869	0.168318	0.0705469
chr1	21143889	21143989	393300	0	-	0.43	(0.408,0.44]	chr1	46836	309	INTRON	INTRON	EIF4G3	ENSG00000075151.24	ENST00000374935.7:ENST00000602326.6:ENST00000685872.1:ENST00000686579.1:ENST00000688741.1:ENST00000400422.6:ENST00000634879.2:ENST00000693470.1:ENST00000685814.1:ENST00000356916.7:ENST00000682284.1:ENST00000438975.5:ENST00000411888.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	65	2	1.42102	1.604915	1.78881	0.0389354	0.0370259	0.160836	0.139194
chr6	143172978	143173077	2976309	0	+	0.191919	[0,0.28]	chr6	279149	74	INTRON	INTRON	AIG1	ENSG00000146416.19	ENST00000367601.8:ENST00000447498.5:ENST00000646199.1:ENST00000357847.9:ENST00000629020.2:ENST00000275235.8:ENST00000494282.6:ENST00000458219.1:ENST00000470265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	90	2	1.46548	1.604865	1.74425	0.0721311	0.0287343	0.187433	0.139835
chr5	54327714	54327814	2353898	0	+	0.48	(0.476,0.515]	chr5	227055	44	INTRON	INTRON	LINC01033	ENSG00000249069.8	ENST00000665899.1:ENST00000653566.1:ENST00000655801.1:ENST00000654906.1:ENST00000667636.1:ENST00000665869.1:ENST00000664079.1:ENST00000659703.1:ENST00000662351.1:ENST00000523194.7:ENST00000665795.1:ENST00000667992.1:ENST00000662022.1:ENST00000657771.1:ENST00000517934.1	lncRNA	lncRNA	lncRNA	lncRNA	11	83	2	1.59633	1.6047850000000001	1.61324	0.026684	0.0233044	0.134419	0.118272
chr6	30615102	30615199	3077348	0	-	0.494845	(0.476,0.515]	chr6	286294	1	INTRON	INTRON	PPP1R10	ENSG00000204569.10	ENST00000376511.7:ENST00000484449.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	83	2	1.59633	1.6047850000000001	1.61324	0.026684	0.0233044	0.134419	0.118272
chr7	12354238	12354323	3484916	0	-	0.235294	[0,0.28]	chr7	325863	6	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	VWDE	ENSG00000146530.15	ENST00000275358.8:ENST00000452576.6:ENST00000521169.5:ENST00000644150.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	22	239	2	1.08169	1.6047850000000001	2.12788	0.0587595	0.00342232	0.189982	0.0517761
chr1	182861279	182861378	273212	0	+	0.383838	(0.378,0.408]	chr1	31923	7	INTRON	INTRON	DHX9	ENSG00000135829.17	ENST00000367549.4	protein_coding	protein_coding	protein_coding	protein_coding	16	115	2	1.23375	1.60476	1.97577	0.0359677	0.00823929	0.152355	0.0773252
chrX	73825604	73825703	7837774	0	-	0.282828	(0.28,0.32]	chrX	799584	51	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	XIST	ENSG00000229807.13	ENST00000669898.1:ENST00000650627.1:ENST00000434839.3:ENST00000421322.3:ENST00000416330.2:ENST00000429829.6:ENST00000648829.1:ENST00000666954.1:ENST00000417942.5:ENST00000647913.2:ENST00000647696.1:ENST00000650366.1:ENST00000648607.1:ENST00000650548.1:ENST00000650186.1:ENST00000635841.2:ENST00000650637.1:ENST00000648970.1:ENST00000649757.1:ENST00000648991.1:ENST00000648091.1	lncRNA	lncRNA	lncRNA	lncRNA	38	358	2	1.44301	1.6047449999999999	1.76648	0.0171711	0.00179428	0.104099	0.0392772
chrX	66017748	66017848	7672630	0	+	0.5	(0.476,0.515]	chrX	785238	14	EXON_LNCRNA	EXON_LNCRNA:INTRON	MIR223HG	ENSG00000274536.8	ENST00000618234.5:ENST00000621933.2:ENST00000691658.1:ENST00000658749.1	lncRNA	lncRNA	lncRNA	lncRNA	8	59	2	1.57103	1.604705	1.63838	0.0555021	0.0307896	0.165463	0.143385
chr15	92885037	92885132	6103527	0	+	0.357895	(0.35,0.378]	chr15	581358	8	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	CHASERR:ENSG00000279765	ENSG00000272888.8:ENSG00000279765.3	ENST00000653163.1:ENST00000557682.6:ENST00000556895.5:ENST00000554669.6:ENST00000554894.5:ENST00000557147.1:ENST00000629685.2:ENST00000554133.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	9	73	2	1.5118	1.60468	1.69756	0.0789277	0.0149371	0.198963	0.107462
chr3	152335530	152335630	1535656	0	+	0.33	(0.32,0.35]	chr3	160002	3	SS5_PROX	SS5_PROX:INTRON	MBNL1	ENSG00000152601.18	ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000495875.6:ENST00000324210.10:ENST00000493459.5:ENST00000459747.1:ENST00000460591.5:ENST00000545754.5:ENST00000357472.7:ENST00000324196.9:ENST00000498502.5:ENST00000463374.5:ENST00000485910.5:ENST00000465907.6:ENST00000492948.5:ENST00000485509.5:ENST00000464596.5	protein_coding	protein_coding	protein_coding	protein_coding	12	100	2	1.37637	1.60466	1.83295	0.0329291	0.0224097	0.145171	0.11692
chrX	111709643	111709739	7702305	0	+	0.3125	(0.28,0.32]	chrX	788233	2	INTRON	INTRON	ALG13	ENSG00000101901.12	ENST00000487141.5:ENST00000394780.8:ENST00000251943.8:ENST00000610588.4:ENST00000621367.4:ENST00000622997.3:ENST00000624161.3:ENST00000636363.1:ENST00000624881.3:ENST00000495283.5:ENST00000623144.3:ENST00000470971.5:ENST00000623148.3:ENST00000436609.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	95	2	1.53798	1.60466	1.67134	0.0387947	0.0287839	0.143072	0.140044
chr12	68837344	68837439	5163286	0	+	0.442105	(0.44,0.476]	chr12	488957	2	INTRON	INTRON	MDM2	ENSG00000135679.27	ENST00000258149.11:ENST00000393412.7:ENST00000311420.13:ENST00000393417.8:ENST00000258148.11:ENST00000539479.6:ENST00000523991.5:ENST00000543323.5:ENST00000393415.7:ENST00000393416.7:ENST00000481186.6:ENST00000545204.2:ENST00000544561.6:ENST00000665020.1:ENST00000666617.1:ENST00000671567.1:ENST00000393410.5:ENST00000496959.5:ENST00000299252.8:ENST00000360430.6:ENST00000517852.5:ENST00000546048.5:ENST00000540352.5:ENST00000542502.5:ENST00000537182.5:ENST00000536089.5:ENST00000393413.7:ENST00000350057.9:ENST00000348801.7:ENST00000478070.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	53	2	1.49356	1.60465	1.71574	0.0537505	0.045256	0.180803	0.149888
chr2	241271416	241271516	1348124	0	-	0.46	(0.44,0.476]	chr2	141638	1	SS5_PROX	SS5_PROX:INTRON	HDLBP	ENSG00000115677.18	ENST00000391975.5:ENST00000427183.6:ENST00000310931.10:ENST00000391976.6:ENST00000428482.5:ENST00000442714.5:ENST00000452065.5:ENST00000444092.5:ENST00000430918.5:ENST00000441124.5:ENST00000426343.5:ENST00000413241.5:ENST00000423693.5:ENST00000425989.5:ENST00000449864.5:ENST00000420451.5:ENST00000422080.5:ENST00000458564.5:ENST00000427007.5:ENST00000449504.5:ENST00000417540.5:ENST00000462130.1:ENST00000490697.1:ENST00000496569.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	53	2	1.49356	1.60465	1.71574	0.0537505	0.045256	0.180803	0.149888
chr19	12716239	12716338	7141332	0	-	0.454545	(0.44,0.476]	chr19	720723	1	INTRON	INTRON	TNPO2	ENSG00000105576.16	ENST00000425528.6:ENST00000356861.9:ENST00000450764.6:ENST00000592287.5:ENST00000588216.5:ENST00000585886.5:ENST00000589956.5:ENST00000586775.5:ENST00000588484.1:ENST00000587654.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:non_stop_decay:nonsense_mediated_decay:processed_transcript	11	83	2	1.41932	1.60461	1.7899	0.0391653	0.0158205	0.161534	0.101453
chr15	92910319	92910418	6103793	0	+	0.383838	(0.378,0.408]	chr15	581401	13	INTRON	INTRON	ENSG00000279765:CHD2	ENSG00000279765.3:ENSG00000173575.22	ENST00000629685.2:ENST00000630790.1:ENST00000626874.2:ENST00000394196.9:ENST00000635856.1:ENST00000420239.7:ENST00000628375.2:ENST00000625990.3:ENST00000626782.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	14	110	2	1.55777	1.6044900000000002	1.65121	0.0193744	0.0160595	0.119831	0.101453
chr6	36901422	36901521	2854961	0	+	0.494949	(0.476,0.515]	chr6	269879	14	INTRON	INTRON	C6orf89	ENSG00000198663.17	ENST00000359359.6:ENST00000355190.7:ENST00000373685.1:ENST00000480824.7	protein_coding	protein_coding	protein_coding	protein_coding	11	79	2	1.34709	1.604455	1.86182	0.0408438	0.0178986	0.161534	0.106365
chr19	28428451	28428551	7165427	0	-	0.38	(0.378,0.408]	chr19	724146	82	INTRON	INTRON	ENSG00000260725	ENSG00000260725.1	ENST00000567877.1	lncRNA	lncRNA	lncRNA	lncRNA	17	122	2	1.04346	1.60438	2.1653	0.0707931	0.00289537	0.184528	0.0494641
chr21	39311143	39311243	7465518	0	-	0.35	(0.32,0.35]	chr21	760568	122	INTRON	INTRON	BRWD1	ENSG00000185658.14	ENST00000333229.6:ENST00000342449.8:ENST00000380800.7:ENST00000341322.4:ENST00000470108.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	70	2	1.55682	1.604305	1.65179	0.0724487	0.0245569	0.188101	0.131869
chr4	139171170	139171270	2247287	0	-	0.47	(0.44,0.476]	chr4	219601	313	INTRON	INTRON	ELF2	ENSG00000109381.21	ENST00000394235.6:ENST00000686138.1:ENST00000511184.5:ENST00000511006.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	82	2	1.3156	1.6038000000000001	1.892	0.0578352	0.00935701	0.167723	0.0858596
chr10	92625337	92625436	4491009	0	+	0.454545	(0.44,0.476]	chr10	413586	35	INTRON	INTRON	KIF11	ENSG00000138160.7	ENST00000676757.1:ENST00000676647.1:ENST00000260731.5:ENST00000676621.1:ENST00000677720.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	44	2	1.43625	1.6036299999999999	1.77101	0.0693975	0.063142	0.197183	0.184298
chrX	73945919	73946015	7682110	0	+	0.447917	(0.44,0.476]	chrX	786613	3	INTRON	INTRON	JPX	ENSG00000225470.8	ENST00000664637.1:ENST00000639185.1:ENST00000655090.1:ENST00000640437.1:ENST00000660546.1:ENST00000667886.1:ENST00000660840.1:ENST00000657179.1:ENST00000670506.1:ENST00000657910.1:ENST00000662120.1:ENST00000671207.1:ENST00000659254.1:ENST00000656624.1:ENST00000667573.1:ENST00000666493.1:ENST00000660856.1:ENST00000660836.1:ENST00000668590.1:ENST00000658649.1:ENST00000414209.6:ENST00000654137.1:ENST00000670994.1:ENST00000653479.1:ENST00000602772.5:ENST00000655879.1:ENST00000657372.1:ENST00000657096.1:ENST00000602985.6:ENST00000670685.1:ENST00000670503.1:ENST00000663027.1:ENST00000654995.1:ENST00000602895.6:ENST00000654374.1:ENST00000660087.1:ENST00000665032.1:ENST00000671336.1:ENST00000671476.1:ENST00000667057.1:ENST00000670192.1:ENST00000670464.1:ENST00000665345.1:ENST00000661546.1:ENST00000662543.1:ENST00000602938.6:ENST00000602737.6:ENST00000664295.1:ENST00000654005.1:ENST00000669149.1:ENST00000659852.1:ENST00000656509.1:ENST00000602294.6:ENST00000667294.1:ENST00000663470.1:ENST00000602920.6:ENST00000671021.1:ENST00000659849.1:ENST00000667937.1:ENST00000661130.1:ENST00000654196.1:ENST00000655994.1:ENST00000659373.1:ENST00000662239.1:ENST00000670805.1:ENST00000656263.1:ENST00000653069.1:ENST00000657638.1:ENST00000653808.1:ENST00000653929.1:ENST00000653885.1:ENST00000659023.1:ENST00000602546.5:ENST00000664328.1:ENST00000659622.1:ENST00000415215.1:ENST00000671518.1:ENST00000670408.1	lncRNA	lncRNA	lncRNA	lncRNA	6	44	2	1.43625	1.6036299999999999	1.77101	0.0693975	0.063142	0.197183	0.184298
chr10	35354280	35354379	4424680	0	+	0.515152	(0.476,0.515]	chr10	407899	167	INTRON	INTRON	CCNY	ENSG00000108100.18	ENST00000374706.5:ENST00000490012.6:ENST00000493157.6:ENST00000374704.8:ENST00000265375.13:ENST00000339497.7:ENST00000492478.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	46	2	1.52615	1.603535	1.68092	0.0739267	0.0474026	0.190914	0.169265
chr5	95652774	95652863	2430726	0	+	0.483146	(0.476,0.515]	chr5	233575	6	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RFESD	ENSG00000175449.14	ENST00000511684.5:ENST00000380005.9:ENST00000506212.1:ENST00000311364.8:ENST00000458310.1:ENST00000504893.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	46	2	1.52615	1.603535	1.68092	0.0739267	0.0474026	0.190914	0.169265
chr1	182854478	182854578	273134	0	+	0.37	(0.35,0.378]	chr1	31888	3	SS5_PROX	SS5_PROX:INTRON	DHX9	ENSG00000135829.17	ENST00000367549.4:ENST00000479271.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	15	122	2	1.43646	1.603445	1.77043	0.0351612	0.00665151	0.137535	0.0738715
chr3	22382535	22382633	1387717	0	+	0.295918	(0.28,0.32]	chr3	145358	7	EXON_LNCRNA	EXON_LNCRNA	HMGB1P5	ENSG00000132967.9	ENST00000451497.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	13	127	2	1.41075	1.60334	1.79593	0.0359835	0.0147274	0.152355	0.0983813
chr16	89466771	89466871	6543364	0	-	0.56	(0.515,0.57]	chr16	634281	351	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	55	2	1.26017	1.603035	1.9459	0.04508	0.0429089	0.163403	0.148082
chr18	12718016	12718116	6876060	0	+	0.48	(0.476,0.515]	chr18	681237	1	SS3_PROX	SS3_PROX:INTRON	PSMG2	ENSG00000128789.21	ENST00000585331.6:ENST00000586445.5:ENST00000590217.5:ENST00000586587.1:ENST00000317615.11	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	88	2	1.29325	1.602975	1.9127	0.0518525	0.00864134	0.159306	0.0840615
chr2	183016978	183017078	1285815	0	-	0.38	(0.378,0.408]	chr2	135424	133	INTRON	INTRON	NCKAP1	ENSG00000061676.15	ENST00000361354.9:ENST00000360982.2	protein_coding	protein_coding	protein_coding	protein_coding	9	68	2	1.57136	1.60297	1.63458	0.0573057	0.0233757	0.167723	0.128037
chr10	125083495	125083595	4713564	0	-	0.42	(0.408,0.44]	chr10	434897	440	INTRON	INTRON	CTBP2	ENSG00000175029.17	ENST00000337195.9:ENST00000411419.6:ENST00000494626.6:ENST00000531469.5:ENST00000460976.5:ENST00000476817.1:ENST00000530884.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	20	155	2	1.35581	1.6029499999999999	1.85009	0.0251597	0.00380235	0.133481	0.0542786
chr6	156966348	156966448	3009054	0	+	0.31	(0.28,0.32]	chr6	281124	226	INTRON	INTRON	ARID1B	ENSG00000049618.24	ENST00000346085.10:ENST00000636930.2:ENST00000647938.1:ENST00000350026.10:ENST00000674298.1:ENST00000674190.1:ENST00000414678.7:ENST00000638000.1:ENST00000319584.11:ENST00000452544.2:ENST00000637887.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	9	87	2	1.56481	1.602815	1.64082	0.0422774	0.0339805	0.148082	0.146815
chr1	207048024	207048124	624917	0	-	0.36	(0.35,0.378]	chr1	74431	43	UTR3	UTR3:EXON_MRNA	YOD1	ENSG00000180667.11	ENST00000367084.1:ENST00000315927.9	protein_coding	protein_coding	protein_coding	protein_coding	26	200	2	1.24557	1.602805	1.96004	0.022633	0.00317741	0.124921	0.0503705
chr1	112933527	112933626	523917	0	-	0.363636	(0.35,0.378]	chr1	61690	31	INTRON	INTRON	SLC16A1	ENSG00000155380.13	ENST00000679803.1:ENST00000369626.8:ENST00000443580.6:ENST00000538576.5:ENST00000429288.2:ENST00000458229.6:ENST00000679846.1:ENST00000478835.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	58	2	1.54563	1.602765	1.6599	0.0545616	0.046845	0.167716	0.165292
chr14	39182347	39182444	5700155	0	+	0.391753	(0.378,0.408]	chr14	541911	6	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	PNN	ENSG00000100941.9	ENST00000216832.9:ENST00000557680.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	79	2	1.58985	1.602365	1.61488	0.029782200000000002	0.0290335	0.141186	0.129138
chr6	147208366	147208466	2988747	0	+	0.31	(0.28,0.32]	chr6	280001	19	INTRON	INTRON	STXBP5	ENSG00000164506.15	ENST00000321680.11:ENST00000367481.7:ENST00000546097.5:ENST00000367480.7	protein_coding	protein_coding	protein_coding	protein_coding	15	141	2	1.59462	1.6023649999999998	1.61011	0.0287963	0.0124141	0.127208	0.0973643
chr3	23850781	23850881	1388178	0	+	0.46	(0.44,0.476]	chr3	145385	389	INTRON	INTRON	UBE2E1	ENSG00000170142.12	ENST00000306627.8:ENST00000346855.7:ENST00000495141.5:ENST00000442670.5:ENST00000424381.5:ENST00000467766.5:ENST00000475680.5:ENST00000452012.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	11	82	2	1.24474	1.60218	1.95962	0.070785699999999993	0.00707371	0.184528	0.0754923
chr7	23389795	23389895	3502854	0	-	0.42	(0.408,0.44]	chr7	326877	268	INTRON	INTRON	IGF2BP3	ENSG00000136231.14	ENST00000258729.8:ENST00000421467.6:ENST00000468263.5:ENST00000492771.5:ENST00000479504.5:ENST00000466809.6:ENST00000491719.5:ENST00000465058.5:ENST00000469723.5:ENST00000474105.5:ENST00000476938.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	15	113	2	1.54675	1.6020699999999999	1.65739	0.0189707	0.012928	0.108861	0.0990564
chr16	89489037	89489115	6543587	0	-	0.423077	(0.408,0.44]	chr16	634284	1	EXON_LNCRNA	EXON_LNCRNA:INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	76	2	1.57567	1.60205	1.62843	0.033074	0.025242	0.133898	0.133676
chr17	32379292	32379392	6598288	0	+	0.3	(0.28,0.32]	chr17	641948	60	UTR3	UTR3:EXON_MRNA	ZNF207	ENSG00000010244.19	ENST00000394670.9:ENST00000577908.5:ENST00000581531.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	18	172	2	1.30131	1.601795	1.90228	0.0463958	0.00350275	0.151036	0.0544496
chr2	235602619	235602719	1042423	0	+	0.39	(0.378,0.408]	chr2	111222	777	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1:ENST00000402604.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	77	2	1.38218	1.601685	1.82119	0.0444424	0.0214651	0.162728	0.114274
chr10	101785206	101785302	4680623	0	-	0.322917	(0.32,0.35]	chr10	431933	9	UTR3	UTR3:EXON_MRNA	OGA	ENSG00000198408.14	ENST00000439817.5:ENST00000361464.8	protein_coding	protein_coding	protein_coding	protein_coding	29	251	2	1.35628	1.601605	1.84693	0.0238244	0.00168147	0.118953	0.0381301
chr7	23528991	23529090	3503925	0	-	0.30303	(0.28,0.32]	chr7	326970	62	INTRON	INTRON	TRA2A	ENSG00000164548.12	ENST00000297071.9:ENST00000392502.8:ENST00000538367.6:ENST00000621813.4:ENST00000494255.5:ENST00000474586.5:ENST00000490942.1:ENST00000448549.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	12	102	2	1.26769	1.601565	1.93544	0.043453	0.0276828	0.162255	0.123904
chr2	159761021	159761118	899977	0	+	0.443299	(0.44,0.476]	chr2	99564	13	INTRON	INTRON	MARCHF7	ENSG00000136536.15	ENST00000539065.5:ENST00000259050.8:ENST00000409175.6:ENST00000409591.5:ENST00000420397.1:ENST00000478396.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	75	2	1.38203	1.601545	1.82106	0.058781	0.0124107	0.167915	0.0973643
chr21	34080319	34080419	7401160	0	+	0.33	(0.32,0.35]	chr21	753967	62	INTRON	INTRON	MRPS6:SLC5A3	ENSG00000243927.6:ENSG00000198743.7	ENST00000488492.5:ENST00000477091.5:ENST00000399312.3:ENST00000381151.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	72	2	1.59364	1.601515	1.60939	0.0439266	0.0413426	0.161557	0.14937
chr5	54051596	54051696	2618321	0	-	0.33	(0.32,0.35]	chr5	248837	34	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	72	2	1.59364	1.601515	1.60939	0.0439266	0.0413426	0.161557	0.14937
chr11	65432958	65433058	4805872	0	+	0.3	(0.28,0.32]	chr11	446554	103	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2:ENST00000687943.1	lncRNA	lncRNA	lncRNA	lncRNA	80	678	2	1.30321	1.60151	1.89981	0.0089135699999999991	0.00182312	0.0849778	0.0386085
chr10	125108209	125108308	4713813	0	-	0.383838	(0.378,0.408]	chr10	434907	71	INTRON	INTRON	CTBP2	ENSG00000175029.17	ENST00000337195.9:ENST00000411419.6:ENST00000494626.6:ENST00000531469.5:ENST00000460976.5:ENST00000476817.1:ENST00000530884.1:ENST00000530930.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	99	2	1.27711	1.6014499999999998	1.92579	0.0441401	0.00998976	0.162255	0.0843858
chr3	141923747	141923845	1526561	0	+	0.357143	(0.35,0.378]	chr3	159056	13	INTRON	INTRON	ATP1B3	ENSG00000069849.11	ENST00000465172.5:ENST00000286371.8:ENST00000466678.5:ENST00000462082.1:ENST00000487199.5:ENST00000484727.1:ENST00000486782.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	13	83	2	1.1094	1.6013549999999999	2.09331	0.0564409	0.0315717	0.184423	0.13151
chr8	108248612	108248702	4023277	0	-	0.477778	(0.476,0.515]	chr8	367691	1	CDS_START	CDS_START:CDS:UTR5:EXON_MRNA:INTRON	EIF3E	ENSG00000104408.11	ENST00000678042.1:ENST00000678773.1:ENST00000677409.1:ENST00000676892.1:ENST00000523674.2:ENST00000677674.1:ENST00000220849.10:ENST00000678937.1:ENST00000677084.1:ENST00000676706.1:ENST00000518100.6:ENST00000677040.1:ENST00000676698.1:ENST00000522352.6:ENST00000521297.2:ENST00000519030.6:ENST00000519627.2:ENST00000518345.2:ENST00000522445.6:ENST00000678334.1:ENST00000678023.1:ENST00000678797.1:ENST00000677614.1:ENST00000676642.1:ENST00000677965.1:ENST00000678901.1:ENST00000678243.1:ENST00000676663.1:ENST00000679198.1:ENST00000678004.1:ENST00000678881.1:ENST00000677272.1:ENST00000677746.1:ENST00000677447.1:ENST00000676548.1:ENST00000676487.1:ENST00000521440.6:ENST00000518442.5:ENST00000522887.1:ENST00000518634.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	47	338	2	1.56265	1.601245	1.63984	0.00348812	0.00293797	0.0522483	0.0496668
chr6	149632358	149632458	3245958	0	-	0.31	(0.28,0.32]	chr6	301589	2	SS5_PROX	SS5_PROX:INTRON	KATNA1	ENSG00000186625.14	ENST00000335643.12:ENST00000367411.7:ENST00000335647.9:ENST00000470620.1:ENST00000444282.5:ENST00000420200.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	76	2	1.59898	1.601205	1.60343	0.0669889	0.030453	0.183051	0.143385
chr11	2983913	2984013	4891914	0	-	0.43	(0.408,0.44]	chr11	458364	1	SS3_PROX	SS3_PROX:INTRON	NAP1L4	ENSG00000205531.13	ENST00000620138.4:ENST00000380542.9:ENST00000526115.5:ENST00000532325.6:ENST00000448187.5:ENST00000399614.6:ENST00000430811.5:ENST00000529361.5:ENST00000528968.5:ENST00000530064.5:ENST00000526842.5:ENST00000531291.5:ENST00000455338.6:ENST00000534372.1	protein_coding	protein_coding	protein_coding	protein_coding	28	188	2	1.28925	1.6011600000000001	1.91307	0.0150637	0.00422117	0.108208	0.0572185
chr1	246906355	246906454	681702	0	-	0.424242	(0.408,0.44]	chr1	80017	3	INTRON	INTRON	AHCTF1	ENSG00000153207.16	ENST00000648844.2:ENST00000326225.3:ENST00000366508.5	protein_coding	protein_coding	protein_coding	protein_coding	8	61	2	1.40374	1.60096	1.79818	0.0721345	0.020428	0.187433	0.122109
chr11	65855050	65855145	4967636	0	-	0.547368	(0.515,0.57]	chr11	468243	5	UTR3	UTR3:EXON_MRNA:INTRON	CFL1	ENSG00000172757.13	ENST00000527752.1:ENST00000308162.10:ENST00000525451.6:ENST00000530945.1:ENST00000527344.5:ENST00000531407.5:ENST00000524553.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	33	203	2	1.16593	1.600945	2.03596	0.0237693	6.36923e-4	0.129075	0.0231685
chr16	69455364	69455462	6379883	0	+	0.418367	(0.408,0.44]	chr16	613140	53	INTRON	INTRON	CYB5B	ENSG00000103018.18	ENST00000686649.1:ENST00000684784.1:ENST00000691260.1:ENST00000689149.1:ENST00000692677.1:ENST00000686167.1:ENST00000307892.13:ENST00000688840.1:ENST00000515314.7:ENST00000687677.1:ENST00000568237.2:ENST00000561792.7:ENST00000687780.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	61	2	1.44993	1.600915	1.7519	0.0638951	0.0239555	0.177824	0.129259
chr19	57862429	57862528	7106162	0	+	0.414141	(0.408,0.44]	chr19	713245	24	UTR3	UTR3:EXON_MRNA	ZNF587	ENSG00000198466.12	ENST00000339656.8:ENST00000419854.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	61	2	1.44993	1.600915	1.7519	0.0638951	0.0239555	0.177824	0.129259
chr1	167789120	167789220	248448	0	+	0.39	(0.378,0.408]	chr1	29523	13	UTR3	UTR3:EXON_MRNA	MPZL1	ENSG00000197965.12	ENST00000359523.7:ENST00000392121.7	protein_coding	protein_coding	protein_coding	protein_coding	19	146	2	1.58263	1.600835	1.61904	0.0145988	0.00856143	0.0982233	0.083729
chr3	42633112	42633208	1406308	0	+	0.520833	(0.515,0.57]	chr3	147691	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NKTR	ENSG00000114857.19	ENST00000468735.6:ENST00000429888.5:ENST00000232978.13:ENST00000465584.5:ENST00000498730.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	75	2	1.44412	1.600535	1.75695	0.0281447	0.016156	0.137182	0.101453
chr12	48691341	48691440	5319306	0	-	0.353535	(0.35,0.378]	chr12	506382	30	UTR3	UTR3:EXON_MRNA	CCNT1	ENSG00000129315.11	ENST00000618666.4:ENST00000261900.8	protein_coding	protein_coding	protein_coding	protein_coding	7	58	2	1.5118	1.6004399999999999	1.68908	0.0789277	0.0301354	0.198963	0.142482
chr1	31291113	31291212	413234	0	-	0.474747	(0.44,0.476]	chr1	49803	13	INTRON	INTRON	SNRNP40	ENSG00000060688.13	ENST00000263694.9	protein_coding	protein_coding	protein_coding	protein_coding	9	68	2	1.40212	1.600425	1.79873	0.0524678	0.0223888	0.178047	0.116918
chr1	17435151	17435250	384941	0	-	0.353535	(0.35,0.378]	chr1	45493	56	INTRON	INTRON	RCC2	ENSG00000179051.14	ENST00000375436.9:ENST00000375433.3	protein_coding	protein_coding	protein_coding	protein_coding	6	51	2	1.58862	1.60041	1.6122	0.0616849	0.0615516	0.193423	0.174021
chr16	89780552	89780647	6544438	0	-	0.452632	(0.44,0.476]	chr16	634529	2	INTRON	INTRON	FANCA	ENSG00000187741.16	ENST00000561667.2:ENST00000389301.8:ENST00000568369.6:ENST00000564475.6:ENST00000696275.1:ENST00000696287.1:ENST00000696286.1:ENST00000696274.1:ENST00000696291.1:ENST00000696276.1:ENST00000567205.2:ENST00000567284.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	18	137	2	1.39354	1.6003500000000002	1.80716	0.0249666	0.00538638	0.132614	0.0643445
chr8	129563929	129564029	4060926	0	-	0.27	[0,0.28]	chr8	369672	68	INTRON	INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1:ENST00000676273.1:ENST00000667643.1:ENST00000668791.1:ENST00000663716.1:ENST00000663572.1:ENST00000676148.1:ENST00000667962.1:ENST00000674877.1:ENST00000675316.1:ENST00000674656.1:ENST00000446592.7:ENST00000667341.1:ENST00000675186.1:ENST00000652971.1:ENST00000661447.1:ENST00000674863.1:ENST00000675498.1:ENST00000675527.1:ENST00000676108.1:ENST00000657647.1:ENST00000675589.1:ENST00000675913.1:ENST00000675109.1:ENST00000671632.1:ENST00000671311.1:ENST00000676099.1:ENST00000660652.1:ENST00000675522.1:ENST00000675044.1:ENST00000675435.1:ENST00000674639.1:ENST00000676069.1:ENST00000675532.1:ENST00000674762.1:ENST00000523151.6:ENST00000675948.1:ENST00000665364.1:ENST00000657251.1:ENST00000675166.1:ENST00000674883.1:ENST00000675867.1:ENST00000674580.1:ENST00000675393.1:ENST00000520048.1:ENST00000674906.1:ENST00000676030.1:ENST00000670588.1:ENST00000675072.1:ENST00000664936.1:ENST00000652914.1:ENST00000657069.1:ENST00000674882.1	lncRNA	lncRNA	lncRNA	lncRNA	12	131	2	1.5825	1.600285	1.61807	0.0376815	0.0219177	0.140649	0.123836
chr16	3864472	3864572	6435925	0	-	0.52	(0.515,0.57]	chr16	619582	131	INTRON	INTRON	CREBBP	ENSG00000005339.15	ENST00000262367.10:ENST00000382070.7	protein_coding	protein_coding	protein_coding	protein_coding	7	42	2	1.32981	1.600255	1.8707	0.0640038	0.0523213	0.199279	0.160182
chr4	78809468	78809568	1981716	0	+	0.48	(0.476,0.515]	chr4	198463	324	INTRON	INTRON	BMP2K	ENSG00000138756.19	ENST00000389010.7:ENST00000502613.3:ENST00000502871.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	13	94	2	1.25414	1.600125	1.94611	0.0508046	0.0075261	0.156699	0.0773151
chr1	161600292	161600381	235517	0	+	0.539326	(0.515,0.57]	chr1	28433	1	INTRON	INTRON	FCGR2C	ENSG00000244682.8	ENST00000467903.5:ENST00000507374.5:ENST00000508651.1	polymorphic_pseudogene	processed_transcript	polymorphic_pseudogene	processed_transcript	7	45	2	1.5060500000000001	1.60006	1.69407	0.0511812	0.0459452	0.176696	0.149888
chr7	10775982	10776082	3484540	0	-	0.24	[0,0.28]	chr7	325772	2141	INTRON	INTRON	MGC4859	ENSG00000283117.1	ENST00000634803.1	lncRNA	lncRNA	lncRNA	lncRNA	7	78	2	1.59412	1.600025	1.60593	0.0729426	0.0433625	0.189278	0.162255
chr9	130737754	130737854	4214102	0	+	0.42	(0.408,0.44]	chr9	386427	229	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000393293.4	protein_coding	protein_coding	protein_coding	protein_coding	34	245	2	1.24725	1.59986	1.95247	0.0173363	0.00148813	0.112215	0.035
chr7	43714945	43715045	3526233	0	-	0.37	(0.35,0.378]	chr7	328785	31	INTRON	INTRON	COA1	ENSG00000106603.20	ENST00000415076.6:ENST00000446330.6:ENST00000446564.5:ENST00000438444.5:ENST00000223336.11:ENST00000310564.10:ENST00000415798.5:ENST00000431651.5:ENST00000451651.5:ENST00000418140.5:ENST00000448704.5:ENST00000470156.1:ENST00000457939.1:ENST00000420441.1:ENST00000478504.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	11	92	2	1.59904	1.599825	1.60061	0.0285976	0.0249092	0.139244	0.12011
chr16	11900330	11900430	6446254	0	-	0.23	[0,0.28]	chr16	621128	19	INTRON	INTRON	GSPT1	ENSG00000103342.13	ENST00000434724.7:ENST00000439887.6:ENST00000420576.6:ENST00000568849.5:ENST00000562169.1	protein_coding	protein_coding	protein_coding	protein_coding	7	78	2	1.55741	1.5995949999999999	1.64178	0.0792968	0.0390996	0.199711	0.161325
chr11	34091253	34091329	4768061	0	+	0.407895	(0.378,0.408]	chr11	441016	2	INTRON	INTRON	CAPRIN1	ENSG00000135387.21	ENST00000341394.9:ENST00000528856.5:ENST00000389645.7:ENST00000532820.5:ENST00000530820.5:ENST00000529307.1:ENST00000533657.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	15	119	2	1.52653	1.599405	1.67228	0.0217942	0.0121567	0.123836	0.0910127
chr16	89809345	89809441	6544749	0	-	0.40625	(0.378,0.408]	chr16	634602	5	INTRON	INTRON	FANCA	ENSG00000187741.16	ENST00000561667.2:ENST00000389301.8:ENST00000568369.6:ENST00000564475.6:ENST00000696275.1:ENST00000696287.1:ENST00000696286.1:ENST00000696291.1:ENST00000696276.1:ENST00000567205.2:ENST00000567284.7:ENST00000696277.1:ENST00000696292.1:ENST00000563767.2:ENST00000567621.6:ENST00000696288.1:ENST00000696293.1:ENST00000566889.5:ENST00000389302.7:ENST00000696294.1:ENST00000696295.1:ENST00000563673.5:ENST00000543736.5:ENST00000534992.5:ENST00000565582.5:ENST00000696296.1:ENST00000563513.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	13	100	2	1.17446	1.599265	2.02407	0.0614357	0.00680892	0.193423	0.0711884
chr22	20529546	20529645	7479570	0	+	0.383838	(0.378,0.408]	chr22	762964	48	INTRON	INTRON	MED15	ENSG00000099917.17	ENST00000445987.5:ENST00000444094.5:ENST00000414658.5:ENST00000486656.5:ENST00000433831.5:ENST00000432052.5:ENST00000292733.11:ENST00000263205.11:ENST00000477824.5:ENST00000406969.5:ENST00000382974.6:ENST00000441501.5:ENST00000438962.1:ENST00000445189.5:ENST00000451058.5:ENST00000473028.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	79	2	1.48475	1.599245	1.71374	0.0353336	0.0274158	0.137535	0.136498
chr4	110189553	110189653	2227644	0	-	0.34	(0.32,0.35]	chr4	218024	836	INTRON	INTRON	ELOVL6	ENSG00000170522.10	ENST00000394607.7:ENST00000302274.8:ENST00000514184.5:ENST00000506625.5:ENST00000506461.1:ENST00000503885.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	17	147	2	1.34066	1.5992	1.85774	0.0345187	0.0061655	0.136471	0.0712486
chr13	19722460	19722560	5552335	0	-	0.51	(0.476,0.515]	chr13	530696	125	INTRON	INTRON	PSPC1	ENSG00000121390.19	ENST00000471658.5:ENST00000492741.5:ENST00000635562.1:ENST00000338910.9:ENST00000619300.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	14	99	2	1.35157	1.599145	1.84672	0.0293212	0.0126682	0.141981	0.0926667
chr1	213251357	213251457	312715	0	+	0.54	(0.515,0.57]	chr1	35979	83	INTRON	INTRON	RPS6KC1	ENSG00000136643.12	ENST00000615329.4:ENST00000543354.5:ENST00000614059.4:ENST00000543470.5:ENST00000366960.8:ENST00000366959.4:ENST00000490299.5:ENST00000491616.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	50	2	1.38719	1.599095	1.811	0.0540435	0.0325989	0.181713	0.133687
chr11	85979480	85979575	5013920	0	-	0.263158	[0,0.28]	chr11	472923	9	INTRON	INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000530692.5:ENST00000630913.2:ENST00000529760.5:ENST00000528398.5:ENST00000532603.5:ENST00000356360.9:ENST00000529016.5:ENST00000526961.5:ENST00000530542.1	protein_coding	protein_coding	protein_coding	protein_coding	29	293	2	1.25603	1.599075	1.94212	0.0246996	0.00599759	0.131869	0.0674604
chrX	78125830	78125929	7687245	0	+	0.424242	(0.408,0.44]	chrX	787044	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	PGK1	ENSG00000102144.15	ENST00000644362.1:ENST00000373316.5:ENST00000476531.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	25	177	2	1.587	1.59907	1.61114	0.0148616	0.00436241	0.0989021	0.060356
chr5	31506329	31506428	2596745	0	-	0.464646	(0.44,0.476]	chr5	246668	13	INTRON	INTRON	DROSHA	ENSG00000113360.17	ENST00000344624.8:ENST00000511367.6:ENST00000513349.5:ENST00000512076.1	protein_coding	protein_coding	protein_coding	protein_coding	8	60	2	1.38203	1.5989900000000001	1.81595	0.058781	0.0317953	0.167915	0.14477
chr6	33275320	33275415	2846806	0	+	0.494737	(0.476,0.515]	chr6	268614	1	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	RPS18	ENSG00000231500.7	ENST00000439602.7:ENST00000474973.5:ENST00000474626.5:ENST00000476222.5:ENST00000496813.5:ENST00000490191.5:ENST00000472218.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	27	208	2	1.44512	1.59897	1.75282	0.0156035	0.00278601	0.109464	0.0469265
chr8	102354878	102354978	4012173	0	-	0.48	(0.476,0.515]	chr8	367218	74	INTRON	INTRON	UBR5	ENSG00000104517.13	ENST00000520539.6:ENST00000220959.8:ENST00000521922.5	protein_coding	protein_coding	protein_coding	protein_coding	21	145	2	1.34803	1.59897	1.84991	0.0173102	0.0067946	0.112058	0.0711802
chr22	19101566	19101666	7551806	0	-	0.52	(0.515,0.57]	chr22	771903	117	INTRON	INTRON	DGCR2	ENSG00000070413.20	ENST00000537045.5:ENST00000545799.5:ENST00000263196.12:ENST00000389262.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	74	2	1.58964	1.5989499999999999	1.60826	0.0408	0.0118853	0.1451	0.0962115
chr9	37207334	37207434	4118530	0	+	0.3	(0.28,0.32]	chr9	375389	204	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000461038.5:ENST00000488607.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	102	2	1.43837	1.59878	1.75919	0.0328251	0.0300418	0.145164	0.129138
chr8	26315705	26315805	3716338	0	+	0.32	(0.28,0.32]	chr8	345372	107	INTRON	INTRON	PPP2R2A	ENSG00000221914.11	ENST00000380737.8:ENST00000520329.5:ENST00000518254.5:ENST00000524169.5:ENST00000518397.5:ENST00000522535.5:ENST00000665949.1:ENST00000522150.5:ENST00000523473.5:ENST00000521095.5:ENST00000660435.1:ENST00000523925.5:ENST00000524099.5:ENST00000315985.7:ENST00000519636.5:ENST00000522482.5:ENST00000521557.5:ENST00000519439.5:ENST00000521484.5:ENST00000523964.5:ENST00000667651.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	92	2	1.59385	1.59864	1.60343	0.0669889	0.0190086	0.183051	0.118802
chr9	131194635	131194732	4216343	0	+	0.402062	(0.378,0.408]	chr9	386654	20	INTRON	INTRON	NUP214	ENSG00000126883.19	ENST00000695497.1:ENST00000695498.1:ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000525980.5:ENST00000531929.5:ENST00000651334.1:ENST00000524578.6:ENST00000453861.6:ENST00000470765.5:ENST00000483497.6:ENST00000465486.6:ENST00000531600.1:ENST00000528114.1:ENST00000525384.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	86	2	1.33751	1.598595	1.85968	0.0677318	0.0075228099999999996	0.18426	0.0773151
chr20	43459204	43459304	7275389	0	+	0.51	(0.476,0.515]	chr20	739600	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	SRSF6	ENSG00000124193.16	ENST00000662078.1:ENST00000668808.1:ENST00000670741.1:ENST00000244020.5:ENST00000483871.6:ENST00000671022.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	10	73	2	1.48441	1.598535	1.71266	0.0315624	0.0293304	0.144381	0.128055
chr5	133972170	133972270	2725726	0	-	0.38	(0.378,0.408]	chr5	256420	4	UTR3	UTR3:EXON_MRNA	VDAC1	ENSG00000213585.11	ENST00000265333.8:ENST00000395044.7:ENST00000395047.6	protein_coding	protein_coding	protein_coding	protein_coding	20	158	2	1.25855	1.598325	1.9381	0.0328382	0.00323256	0.145164	0.0507196
chr3	141998576	141998674	1833929	0	-	0.336735	(0.32,0.35]	chr3	184326	31	INTRON	INTRON	TFDP2	ENSG00000114126.18	ENST00000489671.6:ENST00000499676.5:ENST00000486111.5:ENST00000477292.5:ENST00000495310.5:ENST00000467072.5:ENST00000487734.5:ENST00000479040.5:ENST00000467667.5:ENST00000478006.5:ENST00000497579.5:ENST00000464782.5:ENST00000488107.6:ENST00000475734.5:ENST00000471095.5:ENST00000494358.5:ENST00000467634.1:ENST00000495095.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	62	2	1.59364	1.5983049999999999	1.60297	0.0647328	0.0413426	0.179192	0.161557
chr9	130735954	130736054	4214084	0	+	0.49	(0.476,0.515]	chr9	386427	211	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000393293.4	protein_coding	protein_coding	protein_coding	protein_coding	32	238	2	1.31267	1.598285	1.8839	0.016202	0.00156685	0.109464	0.0360728
chr4	144135462	144135562	2252029	0	-	0.38	(0.378,0.408]	chr4	220056	15	INTRON	INTRON	GYPA	ENSG00000170180.22	ENST00000641688.3:ENST00000360771.8:ENST00000642295.1:ENST00000324022.14:ENST00000646447.1:ENST00000535709.6:ENST00000508337.1:ENST00000643254.1:ENST00000643148.1:ENST00000642738.1:ENST00000642713.1:ENST00000512064.5:ENST00000512789.5:ENST00000504786.5:ENST00000503627.2:ENST00000509346.5:ENST00000514603.1:ENST00000644398.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	14	107	2	1.56924	1.59825	1.62726	0.0267731	0.0118749	0.123349	0.0962115
chr21	10417505	10417605	7368169	0	+	0.47	(0.44,0.476]	chr21	751975	22	INTRON	INTRON	BAGE2	ENSG00000187172.15	ENST00000474011.5:ENST00000470054.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	17	126	2	1.48265	1.59821	1.71377	0.0178087	0.0102504	0.105916	0.089002
chr3	101371207	101371307	1757150	0	-	0.53	(0.515,0.57]	chr3	178305	28	INTRON	INTRON	SENP7	ENSG00000138468.16	ENST00000394095.7:ENST00000314261.11:ENST00000394094.6:ENST00000394091.5:ENST00000348610.3	protein_coding	protein_coding	protein_coding	protein_coding	8	50	2	1.44237	1.598045	1.75372	0.0456196	0.0386904	0.164236	0.14279
chr8	43123173	43123272	3746468	0	+	0.525253	(0.515,0.57]	chr8	348632	4	UTR3	UTR3:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	POMK	ENSG00000185900.11	ENST00000676193.1:ENST00000331373.10:ENST00000674937.1:ENST00000614426.2:ENST00000674782.1:ENST00000676178.1:ENST00000674676.1:ENST00000675675.1:ENST00000675322.1:ENST00000674646.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	50	2	1.32981	1.597955	1.8661	0.0640038	0.0274846	0.199279	0.123904
chr8	127741157	127741256	3860021	0	+	0.181818	[0,0.28]	chr8	355373	3	UTR3	UTR3:EXON_MRNA	MYC	ENSG00000136997.21	ENST00000651626.1:ENST00000377970.6:ENST00000524013.2:ENST00000621592.8:ENST00000652288.1	protein_coding	protein_coding	protein_coding	protein_coding	15	147	2	1.205	1.597915	1.99083	0.0477206	0.0167575	0.170276	0.103184
chr9	37138734	37138834	4117840	0	+	0.31	(0.28,0.32]	chr9	375372	114	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000322831.6:ENST00000461038.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	87	2	1.40698	1.5977649999999999	1.78855	0.0778529	0.0159081	0.196685	0.109464
chr5	132299408	132299507	2486214	0	+	0.383838	(0.378,0.408]	chr5	237204	34	INTRON	INTRON	SLC22A4	ENSG00000197208.6	ENST00000200652.4:ENST00000491257.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	14	105	2	1.20818	1.597725	1.98727	0.0541174	0.00639052	0.16473	0.0726555
chr5	87366859	87366959	2668450	0	-	0.46	(0.44,0.476]	chr5	252550	476	INTRON	INTRON	CCNH	ENSG00000134480.16	ENST00000645953.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	11	79	2	1.39666	1.5976949999999999	1.79873	0.0344316	0.0223888	0.147767	0.116918
chr16	74605656	74605756	6525318	0	-	0.35	(0.32,0.35]	chr16	631842	425	INTRON	INTRON	GLG1	ENSG00000090863.12	ENST00000205061.9:ENST00000422840.7:ENST00000447066.6:ENST00000562090.5:ENST00000567951.5:ENST00000627032.2:ENST00000565260.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	62	2	1.55682	1.597625	1.63843	0.0724487	0.0360919	0.188101	0.152563
chrX	111693662	111693762	7702143	0	+	0.36	(0.35,0.378]	chrX	788221	36	INTRON	INTRON	ALG13	ENSG00000101901.12	ENST00000487141.5:ENST00000394780.8:ENST00000251943.8:ENST00000610588.4:ENST00000621367.4:ENST00000622997.3:ENST00000624161.3:ENST00000636363.1:ENST00000624881.3:ENST00000495283.5:ENST00000486353.5:ENST00000623144.3:ENST00000470971.5:ENST00000623148.3:ENST00000471924.5:ENST00000436609.5:ENST00000470704.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	15	115	2	1.34308	1.5976050000000002	1.85213	0.0274048	0.0137208	0.136498	0.0949306
chr6	143507236	143507330	3242502	0	-	0.37234	(0.35,0.378]	chr6	301195	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	FUCA2	ENSG00000001036.14	ENST00000002165.11:ENST00000367585.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	98	2	1.4117	1.597515	1.78333	0.0380767	0.0148511	0.141678	0.106937
chr15	64552444	64552544	6045008	0	+	0.53	(0.515,0.57]	chr15	575696	495	INTRON	INTRON	ZNF609	ENSG00000180357.10	ENST00000326648.5:ENST00000558680.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	45	2	1.56681	1.597475	1.62814	0.064862	0.035203	0.179394	0.150193
chr1	51401117	51401199	453153	0	-	0.365854	(0.35,0.378]	chr1	54333	3	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	EPS15	ENSG00000085832.17	ENST00000371733.8:ENST00000371730.6:ENST00000486505.5:ENST00000478657.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	71	2	1.53417	1.597035	1.6599	0.0545616	0.0271808	0.165292	0.136494
chr17	27301167	27301266	6580603	0	+	0.434343	(0.408,0.44]	chr17	639604	35	INTRON	INTRON	WSB1	ENSG00000109046.15	ENST00000581440.5:ENST00000578312.5:ENST00000583742.1:ENST00000467843.6:ENST00000579733.5:ENST00000583193.5:ENST00000262394.7:ENST00000427287.6:ENST00000581185.5:ENST00000584354.1:ENST00000583786.5:ENST00000581089.1:ENST00000348811.6:ENST00000582208.1:ENST00000584114.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	23	163	2	1.52103	1.596905	1.67278	0.0116704	0.00719476	0.0891208	0.0756137
chr2	17751390	17751489	1074083	0	-	0.444444	(0.44,0.476]	chr2	114655	51	INTRON	INTRON	SMC6	ENSG00000163029.16	ENST00000351948.8:ENST00000448223.7:ENST00000402989.5:ENST00000446852.5:ENST00000621152.4:ENST00000428868.1	protein_coding	protein_coding	protein_coding	protein_coding	21	154	2	1.58508	1.596845	1.60861	0.0107426	0.0084131	0.0865813	0.082518
chr6	156993032	156993131	3009323	0	+	0.454545	(0.44,0.476]	chr6	281130	75	INTRON	INTRON	ARID1B	ENSG00000049618.24	ENST00000346085.10:ENST00000636930.2:ENST00000647938.1:ENST00000350026.10:ENST00000674298.1:ENST00000674190.1:ENST00000414678.7:ENST00000319584.11:ENST00000452544.2:ENST00000637887.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	52	2	1.34221	1.596835	1.85146	0.0656882	0.0545846	0.182529	0.181162
chr1	31014299	31014399	412379	0	-	0.34	(0.32,0.35]	chr1	49725	68	INTRON	INTRON	PUM1	ENSG00000134644.16	ENST00000426105.7:ENST00000373747.7:ENST00000257075.9:ENST00000424085.6:ENST00000525843.5:ENST00000440538.6:ENST00000373741.8:ENST00000373742.6:ENST00000526215.5:ENST00000525948.5:ENST00000480602.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	69	2	1.50258	1.596825	1.69107	0.0517392	0.0399817	0.161534	0.159306
chr8	123376854	123376954	4042444	0	-	0.47	(0.44,0.476]	chr8	368782	38	INTRON	INTRON	ATAD2	ENSG00000156802.13	ENST00000287394.10:ENST00000517666.5:ENST00000521903.5:ENST00000519124.5:ENST00000521496.5:ENST00000530065.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	79	2	1.4317	1.596825	1.76195	0.0304668	0.0252608	0.143385	0.12011
chr1	20782028	20782127	389816	0	-	0.383838	(0.378,0.408]	chr1	46582	11	INTRON	INTRON	HP1BP3	ENSG00000127483.19	ENST00000438032.6:ENST00000312239.10:ENST00000424732.5:ENST00000417710.5:ENST00000375000.5:ENST00000437575.5:ENST00000419490.5:ENST00000414993.1:ENST00000443615.1	protein_coding	protein_coding	protein_coding	protein_coding	10	73	2	1.46195	1.5967950000000002	1.73164	0.0441773	0.0276002	0.149888	0.137011
chr3	10046000	10046079	1362391	0	+	0.278481	[0,0.28]	chr3	143489	3	SS5_PROX	SS5_PROX:INTRON	FANCD2	ENSG00000144554.13	ENST00000682647.1:ENST00000287647.7:ENST00000676013.1:ENST00000675286.1:ENST00000419585.5:ENST00000681997.1:ENST00000683263.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	10	112	2	1.44922	1.596735	1.74425	0.0495121	0.0287343	0.156383	0.139835
chr12	79775040	79775139	5374889	0	-	0.333333	(0.32,0.35]	chr12	512630	16	UTR3	UTR3:EXON_MRNA	PPP1R12A	ENSG00000058272.19	ENST00000261207.9:ENST00000450142.7:ENST00000437004.6	protein_coding	protein_coding	protein_coding	protein_coding	8	69	2	1.37958	1.59673	1.81388	0.0577841	0.0371014	0.188484	0.139201
chr22	19942197	19942297	7477404	0	+	0.62	(0.57,1]	chr22	762553	3	SS5_PROX	SS5_PROX:INTRON	COMT	ENSG00000093010.15	ENST00000676678.1:ENST00000403184.5:ENST00000361682.11:ENST00000403710.5:ENST00000407537.5:ENST00000467943.5:ENST00000678868.1:ENST00000678769.1:ENST00000428707.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	12	45	2	1.32369	1.596715	1.86974	0.043307	0.00983148	0.148082	0.0877296
chr7	73520927	73521026	3555087	0	-	0.313131	(0.28,0.32]	chr7	330813	97	INTRON	INTRON	BAZ1B	ENSG00000009954.11	ENST00000339594.9:ENST00000404251.1	protein_coding	protein_coding	protein_coding	protein_coding	10	98	2	1.52982	1.59662	1.66342	0.0379288	0.029437	0.157212	0.128055
chrX	136871200	136871294	7897585	0	-	0.446809	(0.44,0.476]	chrX	804143	4	INTRON	INTRON	RBMX	ENSG00000147274.14	ENST00000561733.5:ENST00000431446.7:ENST00000496459.2:ENST00000568578.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	10	75	2	1.56617	1.5964550000000002	1.62674	0.0338203	0.0253995	0.134476	0.133676
chr5	65970534	65970634	2371287	0	+	0.38	(0.378,0.408]	chr5	228480	15	INTRON	INTRON	ERBIN	ENSG00000112851.15	ENST00000380943.6:ENST00000507490.1:ENST00000416865.6:ENST00000380935.5:ENST00000284037.10:ENST00000380938.6:ENST00000511297.5:ENST00000506030.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	70	2	1.58985	1.5964	1.60295	0.0422859	0.0290335	0.148082	0.141186
chr7	38748198	38748298	3521316	0	-	0.43	(0.408,0.44]	chr7	328383	22	INTRON	INTRON	VPS41	ENSG00000006715.16	ENST00000310301.9:ENST00000395969.6	protein_coding	protein_coding	protein_coding	protein_coding	8	59	2	1.40381	1.59631	1.78881	0.0521927	0.0370259	0.177259	0.139194
chr6	147327576	147327676	2989957	0	+	0.46	(0.44,0.476]	chr6	280095	3	SS5_PROX	SS5_PROX:INTRON	STXBP5	ENSG00000164506.15	ENST00000321680.11:ENST00000367481.7:ENST00000367480.7:ENST00000367475.6:ENST00000392291.2	protein_coding	protein_coding	protein_coding	protein_coding	10	77	2	1.40212	1.5960100000000002	1.7899	0.0524678	0.0158205	0.178047	0.101453
chr19	2039413	2039512	7114599	0	-	0.484848	(0.476,0.515]	chr19	715026	17	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	MKNK2	ENSG00000099875.16	ENST00000309340.11:ENST00000591142.5:ENST00000589441.5:ENST00000250896.9:ENST00000587416.5:ENST00000588014.5:ENST00000586828.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	34	239	2	1.43312	1.595985	1.75885	0.00733508	0.00364959	0.0764506	0.0535094
chr8	31052371	31052471	3728117	0	+	0.39	(0.378,0.408]	chr8	346522	180	INTRON	INTRON	WRN	ENSG00000165392.11	ENST00000650667.1:ENST00000298139.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	64	2	1.51223	1.595825	1.67942	0.051139	0.0336706	0.176696	0.134145
chr16	21510532	21510632	6461462	0	-	0.5	(0.476,0.515]	chr16	623383	40	INTRON	INTRON	SMG1P3	ENSG00000180747.15	ENST00000522841.6:ENST00000437413.2:ENST00000435197.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	12	84	2	1.36548	1.595715	1.82595	0.0323763	0.0202339	0.145026	0.109955
chr9	37088255	37088354	4117625	0	+	0.313131	(0.28,0.32]	chr9	375354	34	EXON_LNCRNA	EXON_LNCRNA	EBLN3P	ENSG00000281649.3	ENST00000660341.1:ENST00000662098.2:ENST00000666604.1:ENST00000653711.1:ENST00000625445.1:ENST00000658888.2:ENST00000664088.2:ENST00000664382.1:ENST00000654889.1	lncRNA	lncRNA	lncRNA	lncRNA	21	198	2	1.43755	1.5956800000000002	1.75381	0.0301017	0.00434478	0.129261	0.0601934
chr3	48924971	48925053	1421512	0	+	0.47561	(0.44,0.476]	chr3	149472	1	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	ARIH2	ENSG00000177479.20	ENST00000478224.5:ENST00000430423.5:ENST00000452882.5:ENST00000498314.5:ENST00000474618.5:ENST00000492077.5:ENST00000449376.5:ENST00000490095.5:ENST00000463738.5:ENST00000356401.9:ENST00000495761.5:ENST00000483333.5:ENST00000482427.5:ENST00000488963.5:ENST00000420814.5:ENST00000486316.5:ENST00000449729.5:ENST00000433170.5:ENST00000474936.6:ENST00000466850.1:ENST00000484999.5:ENST00000470296.5:ENST00000463204.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	15	106	2	1.52492	1.595625	1.66633	0.0243614	0.012681	0.12011	0.0984014
chr3	157150749	157150841	1844602	0	-	0.358696	(0.35,0.378]	chr3	185649	5	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	CCNL1	ENSG00000163660.12	ENST00000461804.5:ENST00000295926.8:ENST00000464316.5:ENST00000631619.1:ENST00000475298.5:ENST00000474539.5:ENST00000471247.5:ENST00000470121.5:ENST00000476367.5:ENST00000477127.5:ENST00000464679.5:ENST00000495471.1:ENST00000479052.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	26	194	2	1.37876	1.59555	1.81234	0.0120287	0.00732383	0.0962115	0.0736684
chr15	58064835	58064934	6187536	0	-	0.313131	(0.28,0.32]	chr15	589794	64	INTRON	INTRON	ALDH1A2	ENSG00000128918.15	ENST00000537372.5:ENST00000249750.9:ENST00000347587.7:ENST00000430119.6:ENST00000558231.5:ENST00000558595.5:ENST00000558239.5:ENST00000557967.5:ENST00000558073.5:ENST00000559297.5:ENST00000560122.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	10	95	2	1.51187	1.595385	1.6789	0.0598267	0.017572	0.169278	0.11319
chr4	136988	137088	1905770	0	+	0.42	(0.408,0.44]	chr4	191032	51	INTRON	INTRON	ZNF718	ENSG00000250312.8	ENST00000642529.1:ENST00000510175.6:ENST00000609714.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	54	2	1.4947	1.59518	1.69566	0.0566065	0.0453922	0.167352	0.164236
chr17	82521106	82521206	6692618	0	+	0.4	(0.378,0.408]	chr17	654627	4	INTRON	INTRON	FOXK2	ENSG00000141568.21	ENST00000473637.6:ENST00000335255.10:ENST00000527313.6:ENST00000570585.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	18	138	2	1.48798	1.594845	1.70171	0.0208913	0.00704266	0.111827	0.0754923
chr11	47237418	47237518	4787974	0	+	0.42	(0.408,0.44]	chr11	442884	4	SS3_PROX	SS3_PROX:INTRON	DDB2	ENSG00000134574.12	ENST00000256996.9:ENST00000378601.7:ENST00000612309.4:ENST00000617022.4:ENST00000616278.4:ENST00000378600.7:ENST00000378603.7:ENST00000617847.4:ENST00000620515.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	68	2	1.40374	1.59483	1.78592	0.0721345	0.0142075	0.187433	0.103638
chr17	44925393	44925491	6781565	0	-	0.510204	(0.476,0.515]	chr17	668898	8	UTR3	UTR3:EXON_MRNA	KIF18B	ENSG00000186185.14	ENST00000587309.5:ENST00000593135.6	protein_coding	protein_coding	protein_coding	protein_coding	18	125	2	1.11614	1.594795	2.07345	0.0541452	0.00282986	0.164814	0.0491645
chr1	100094799	100094899	515472	0	-	0.43	(0.408,0.44]	chr1	60434	62	INTRON	INTRON	SASS6	ENSG00000156876.10	ENST00000462159.1:ENST00000287482.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	59	2	1.35436	1.5946850000000001	1.83501	0.0603719	0.0323448	0.19151	0.133003
chr7	66956596	66956694	3326594	0	+	0.295918	(0.28,0.32]	chr7	309376	12	UTR3	UTR3:EXON_MRNA	TMEM248	ENSG00000106609.16	ENST00000341567.8	protein_coding	protein_coding	protein_coding	protein_coding	22	209	2	1.23756	1.594565	1.95157	0.0335669	0.00440985	0.146709	0.0587529
chr20	32790603	32790703	7256946	0	+	0.4	(0.378,0.408]	chr20	737157	12	INTRON	INTRON	DNMT3B	ENSG00000088305.19	ENST00000696232.1:ENST00000328111.6:ENST00000696231.1:ENST00000348286.6:ENST00000353855.6:ENST00000696233.1:ENST00000443239.7:ENST00000696234.1:ENST00000696235.1:ENST00000456297.6:ENST00000696236.1:ENST00000201963.3:ENST00000696238.1:ENST00000696239.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	22	167	2	1.54064	1.5945	1.64836	0.0149709	0.00558475	0.0994339	0.0678774
chr3	47758357	47758457	1684841	0	-	0.42	(0.408,0.44]	chr3	172116	120	INTRON	INTRON	SMARCC1	ENSG00000173473.11	ENST00000254480.10:ENST00000425518.5:ENST00000454240.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	17	124	2	1.14366	1.59429	2.04492	0.0589879	0.00224174	0.167915	0.0435144
chr19	17402938	17403035	7151241	0	-	0.453608	(0.44,0.476]	chr19	722579	1	UTR3	UTR3:EXON_MRNA	BST2	ENSG00000130303.14	ENST00000252593.7:ENST00000527220.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	24	177	2	1.54131	1.59416	1.64701	0.00900116	0.00705613	0.0851009	0.071911
chr5	127025225	127025325	2714505	0	-	0.33	(0.32,0.35]	chr5	255278	785	INTRON	INTRON	MARCHF3	ENSG00000173926.6	ENST00000308660.6:ENST00000502289.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	71	2	1.46414	1.594095	1.72405	0.065059	0.0275418	0.179599	0.137011
chr8	23566265	23566365	3715473	0	+	0.42	(0.408,0.44]	chr8	345231	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	SLC25A37	ENSG00000147454.14	ENST00000519973.6:ENST00000290075.10:ENST00000417331.6:ENST00000518881.5:ENST00000520654.1:ENST00000523930.1:ENST00000523883.5:ENST00000517923.1:ENST00000520949.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	47	326	2	1.42027	1.593995	1.76772	0.00518959	0.00276225	0.0654326	0.0469265
chr2	9511128	9511228	1064023	0	-	0.48	(0.476,0.515]	chr2	113488	6	INTRON	INTRON	ADAM17	ENSG00000151694.14	ENST00000310823.8:ENST00000648548.1:ENST00000649227.1:ENST00000648857.1:ENST00000647979.1:ENST00000647610.1:ENST00000650116.1:ENST00000649686.1:ENST00000647622.1:ENST00000649972.1:ENST00000650241.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	54	2	1.32251	1.593715	1.86492	0.0550347	0.0533705	0.179876	0.165463
chr4	1936259	1936358	1911232	0	+	0.353535	(0.35,0.378]	chr4	191777	6	INTRON	INTRON	NSD2	ENSG00000109685.19	ENST00000508803.6:ENST00000514045.5:ENST00000398261.6:ENST00000382891.9:ENST00000353275.9:ENST00000382892.6:ENST00000382895.7:ENST00000312087.10:ENST00000420906.6:ENST00000503128.5:ENST00000677559.1:ENST00000512700.2:ENST00000678714.1:ENST00000511904.1:ENST00000513726.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	70	2	1.31002	1.59364	1.87726	0.0562395	0.0297629	0.184114	0.12908
chr16	9107830	9107929	6285534	0	+	0.424242	(0.408,0.44]	chr16	601929	47	UTR3	UTR3:EXON_MRNA:INTRON	C16orf72	ENSG00000182831.12	ENST00000327827.12:ENST00000574285.2	protein_coding	protein_coding	protein_coding	protein_coding	12	88	2	1.4947	1.593455	1.69221	0.0566065	0.00885582	0.167352	0.0849778
chr16	28154187	28154287	6467878	0	-	0.36	(0.35,0.378]	chr16	624544	2	SS5_PROX	SS5_PROX:INTRON	XPO6	ENSG00000169180.12	ENST00000304658.10:ENST00000565698.5:ENST00000564337.5:ENST00000566175.1:ENST00000574435.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	15	119	2	1.56109	1.59345	1.62581	0.0228676	0.0134069	0.118056	0.101104
chr7	73479465	73479565	3554666	0	-	0.44	(0.408,0.44]	chr7	330783	5	INTRON	INTRON	BAZ1B	ENSG00000009954.11	ENST00000339594.9:ENST00000404251.1	protein_coding	protein_coding	protein_coding	protein_coding	11	83	2	1.31757	1.5934149999999998	1.86926	0.0705974	0.00709955	0.184528	0.0755905
chr4	68050	68140	1905438	0	+	0.577778	(0.57,1]	chr4	191007	3	UTR3	UTR3:EXON_MRNA:INTRON	ZNF595	ENSG00000272602.6	ENST00000608255.2:ENST00000609518.5:ENST00000509152.3:ENST00000610261.6	protein_coding	protein_coding	protein_coding	protein_coding	28	104	2	1.58898	1.59327	1.59756	0.00554298	0.00335497	0.0674166	0.0514696
chr6	147319788	147319887	2989877	0	+	0.333333	(0.32,0.35]	chr6	280084	30	INTRON	INTRON	STXBP5	ENSG00000164506.15	ENST00000321680.11:ENST00000367481.7:ENST00000367480.7	protein_coding	protein_coding	protein_coding	protein_coding	8	70	2	1.30365	1.5931	1.88255	0.0773448	0.0269187	0.196285	0.135288
chr16	85610708	85610808	6415939	0	+	0.6	(0.57,1]	chr16	615470	540	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	7	26	2	1.2666	1.592985	1.91937	0.0788045	0.0468438	0.198736	0.167716
chr19	2430321	2430419	7115900	0	-	0.683673	(0.57,1]	chr19	715343	23	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	LMNB2	ENSG00000176619.13	ENST00000532465.1:ENST00000325327.4:ENST00000475819.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	26	2	1.2666	1.592985	1.91937	0.0788045	0.0468438	0.198736	0.167716
chr14	50899722	50899822	5892772	0	-	0.5	(0.476,0.515]	chr14	559535	412	INTRON	INTRON	PYGL	ENSG00000100504.17	ENST00000532462.5	protein_coding	protein_coding	protein_coding	protein_coding	10	77	2	1.33919	1.592955	1.84672	0.06316	0.0126682	0.197199	0.0926667
chr8	125945186	125945286	3859317	0	+	0.32	(0.28,0.32]	chr8	355335	21	INTRON	INTRON	ENSG00000286122	ENSG00000286122.1	ENST00000651999.1:ENST00000652177.1	lncRNA	lncRNA	lncRNA	lncRNA	19	178	2	1.4732	1.59294	1.71268	0.0164299	0.0132699	0.109979	0.094407
chr11	57772318	57772418	4793236	0	+	0.41	(0.408,0.44]	chr11	443717	78	INTRON	INTRON	ENSG00000288534:CTNND1	ENSG00000288534.1:ENSG00000198561.16	ENST00000673781.1:ENST00000673810.1:ENST00000674116.1:ENST00000674060.1:ENST00000524630.5:ENST00000529919.5:ENST00000533189.1:ENST00000682741.1:ENST00000358694.10:ENST00000361332.8:ENST00000361391.10:ENST00000361796.9:ENST00000415361.6:ENST00000426142.6:ENST00000428599.6:ENST00000525902.5:ENST00000526357.5:ENST00000526772.5:ENST00000527467.5:ENST00000528232.5:ENST00000528621.5:ENST00000529526.5:ENST00000529873.5:ENST00000529986.5:ENST00000530094.5:ENST00000530748.5:ENST00000531014.5:ENST00000532245.5:ENST00000532463.5:ENST00000532649.5:ENST00000532787.5:ENST00000532844.5:ENST00000533667.5:ENST00000534579.5:ENST00000399050.10:ENST00000526938.5:ENST00000531007.2:ENST00000674015.1:ENST00000673826.1:ENST00000673683.1:ENST00000674106.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	44	2	1.43792	1.592835	1.74775	0.0735403	0.062843	0.196433	0.190238
chr12	50995887	50995987	5324465	0	-	0.42	(0.408,0.44]	chr12	507674	1	SS3_PROX	SS3_PROX:INTRON	SLC11A2	ENSG00000110911.17	ENST00000547688.7:ENST00000644495.1:ENST00000643884.1:ENST00000546636.5:ENST00000547198.5:ENST00000646264.1:ENST00000394904.9:ENST00000262052.9:ENST00000643123.1:ENST00000646740.1:ENST00000642227.1:ENST00000541174.6:ENST00000545993.7:ENST00000546743.5:ENST00000550061.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	44	2	1.43792	1.592835	1.74775	0.0735403	0.062843	0.196433	0.190238
chr6	20410029	20410129	2827529	0	+	0.47	(0.44,0.476]	chr6	265575	58	INTRON	INTRON	E2F3	ENSG00000112242.16	ENST00000346618.8:ENST00000535432.2	protein_coding	protein_coding	protein_coding	protein_coding	6	46	2	1.55662	1.59279	1.62896	0.0688347	0.0546679	0.184298	0.182674
chr4	1942238	1942338	1911297	0	+	0.32	(0.28,0.32]	chr4	191790	10	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	NSD2	ENSG00000109685.19	ENST00000508803.6:ENST00000398261.6:ENST00000382891.9:ENST00000353275.9:ENST00000382892.6:ENST00000382895.7:ENST00000312087.10:ENST00000420906.6:ENST00000503128.5:ENST00000677559.1:ENST00000678714.1:ENST00000511904.1:ENST00000513726.5:ENST00000678128.1:ENST00000482415.6:ENST00000514329.5:ENST00000502425.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	14	132	2	1.55075	1.5927850000000001	1.63482	0.0330294	0.0133667	0.133816	0.100827
chr8	11804900	11804999	3702543	0	+	0.484848	(0.476,0.515]	chr8	343487	10	INTRON	INTRON	FDFT1	ENSG00000079459.13	ENST00000538689.4:ENST00000615631.4:ENST00000618539.4:ENST00000530337.5:ENST00000623368.3:ENST00000446331.6:ENST00000443614.6:ENST00000220584.9:ENST00000525607.5:ENST00000525283.5:ENST00000529464.5:ENST00000525900.5:ENST00000528812.5:ENST00000622850.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	51	352	2	1.5584	1.59272	1.62704	0.00514092	0.00220435	0.062965	0.0435144
chr1	26738880	26738980	51605	0	+	0.55	(0.515,0.57]	chr1	6565	57	INTRON	INTRON	ARID1A	ENSG00000117713.21	ENST00000430799.7:ENST00000324856.13:ENST00000457599.6:ENST00000374152.7:ENST00000636219.1	protein_coding	protein_coding	protein_coding	protein_coding	11	67	2	1.32091	1.592265	1.86362	0.0433059	0.0164561	0.162255	0.102235
chr1	45610843	45610940	93480	0	+	0.463918	(0.44,0.476]	chr1	12614	4	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:INTRON	NASP	ENSG00000132780.17	ENST00000437901.6:ENST00000537798.5:ENST00000437362.6:ENST00000350030.8:ENST00000527359.5:ENST00000453748.5:ENST00000525515.5:ENST00000528238.5:ENST00000372052.8:ENST00000351223.7:ENST00000530073.5:ENST00000481782.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	53	2	1.42812	1.592195	1.75627	0.0673866	0.0380723	0.183355	0.157702
chr4	1946744	1946843	1911343	0	+	0.444444	(0.44,0.476]	chr4	191792	45	UTR3	UTR3:EXON_MRNA:INTRON	NSD2	ENSG00000109685.19	ENST00000508803.6:ENST00000398261.6:ENST00000382891.9:ENST00000353275.9:ENST00000382892.6:ENST00000382895.7:ENST00000312087.10:ENST00000503128.5:ENST00000677559.1:ENST00000678714.1:ENST00000511904.1:ENST00000513726.5:ENST00000482415.6:ENST00000514329.5:ENST00000502425.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	53	2	1.42812	1.592195	1.75627	0.0673866	0.0380723	0.183355	0.157702
chr1	17435845	17435944	384948	0	-	0.424242	(0.408,0.44]	chr1	45493	63	INTRON	INTRON	RCC2	ENSG00000179051.14	ENST00000375436.9:ENST00000375433.3	protein_coding	protein_coding	protein_coding	protein_coding	14	104	2	1.35901	1.5920450000000002	1.82508	0.0428833	0.0063277	0.148082	0.0722266
chr16	21431104	21431204	6460625	0	-	0.47	(0.44,0.476]	chr16	623219	2	SS5_PROX	SS5_PROX:INTRON	NPIPB3	ENSG00000169246.16	ENST00000521589.5:ENST00000534903.1:ENST00000545358.5:ENST00000543368.1:ENST00000544154.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	26	190	2	1.49776	1.592025	1.68629	0.0111045	0.00452729	0.0876025	0.0617052
chr4	78782512	78782612	1981446	0	+	0.45	(0.44,0.476]	chr4	198463	54	INTRON	INTRON	BMP2K	ENSG00000138756.19	ENST00000389010.7:ENST00000502613.3:ENST00000502871.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	83	2	1.33609	1.592015	1.84794	0.0510862	0.0127847	0.176696	0.0926667
chr1	155913141	155913239	564628	0	-	0.326531	(0.32,0.35]	chr1	67435	2	UTR3	UTR3:EXON_MRNA	KHDC4	ENSG00000132680.11	ENST00000368321.8:ENST00000368320.7	protein_coding	protein_coding	protein_coding	protein_coding	18	150	2	1.59151	1.59199	1.59247	0.0269797	0.00819483	0.123585	0.0810849
chr1	243076890	243076990	667123	0	-	0.4	(0.378,0.408]	chr1	79146	68	INTRON	INTRON	LINC01347	ENSG00000214837.8	ENST00000627498.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	22	162	2	1.24766	1.5919050000000001	1.93615	0.0263961	0.00402629	0.133676	0.0553683
chr17	64484061	64484159	6815641	0	-	0.408163	(0.378,0.408]	chr17	673745	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	POLG2	ENSG00000256525.8	ENST00000539111.7:ENST00000581355.1:ENST00000671755.1:ENST00000673460.1:ENST00000585104.2:ENST00000582501.5:ENST00000577506.5:ENST00000580490.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	70	2	1.50417	1.5917949999999998	1.67942	0.0384675	0.0336706	0.159169	0.134145
chr16	2754145	2754244	6279831	0	+	0.474747	(0.44,0.476]	chr16	600760	1	INTRON	INTRON	SRRM2	ENSG00000167978.17	ENST00000576924.5:ENST00000301740.13:ENST00000575009.5:ENST00000576894.5:ENST00000575701.4:ENST00000630499.2:ENST00000576415.5:ENST00000571378.5:ENST00000574340.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	14	104	2	1.56391	1.591745	1.61958	0.0187147	0.0172706	0.117523	0.104099
chrX	73960466	73960564	7682261	0	+	0.346939	(0.32,0.35]	chrX	786628	15	INTRON	INTRON	JPX	ENSG00000225470.8	ENST00000664637.1:ENST00000639185.1:ENST00000655090.1:ENST00000640437.1:ENST00000660546.1:ENST00000667886.1:ENST00000660840.1:ENST00000657179.1:ENST00000670506.1:ENST00000657910.1:ENST00000662120.1:ENST00000671207.1:ENST00000659254.1:ENST00000656624.1:ENST00000667573.1:ENST00000660856.1:ENST00000660836.1:ENST00000668590.1:ENST00000658649.1:ENST00000414209.6:ENST00000654137.1:ENST00000670994.1:ENST00000653479.1:ENST00000602772.5:ENST00000655879.1:ENST00000657372.1:ENST00000657096.1:ENST00000602985.6:ENST00000670685.1:ENST00000670503.1:ENST00000663027.1:ENST00000654995.1:ENST00000602895.6:ENST00000654374.1:ENST00000660087.1:ENST00000665032.1:ENST00000671336.1:ENST00000671476.1:ENST00000667057.1:ENST00000670192.1:ENST00000670464.1:ENST00000665345.1:ENST00000661546.1:ENST00000662543.1:ENST00000602938.6:ENST00000664295.1:ENST00000654005.1:ENST00000669149.1:ENST00000659852.1:ENST00000656509.1:ENST00000602294.6:ENST00000667294.1:ENST00000663470.1:ENST00000602920.6:ENST00000671021.1:ENST00000659849.1:ENST00000667937.1:ENST00000661130.1:ENST00000654196.1:ENST00000655994.1:ENST00000659373.1:ENST00000662239.1:ENST00000670805.1:ENST00000656263.1:ENST00000653069.1:ENST00000657638.1:ENST00000653808.1:ENST00000653929.1:ENST00000653885.1:ENST00000659023.1:ENST00000602546.5:ENST00000659622.1:ENST00000671518.1:ENST00000670408.1	lncRNA	lncRNA	lncRNA	lncRNA	7	62	2	1.45026	1.59172	1.73318	0.0622478	0.0462868	0.194723	0.150684
chr8	92789658	92789758	3990002	0	-	0.46	(0.44,0.476]	chr8	365358	32	INTRON	INTRON	FLJ46284	ENSG00000248858.7	ENST00000504861.2	lncRNA	lncRNA	lncRNA	lncRNA	10	73	2	1.4592	1.5917050000000001	1.72421	0.0342963	0.0285163	0.147255	0.12666
chr19	45856306	45856406	7193796	0	-	0.42	(0.408,0.44]	chr19	728658	6	INTRON	INTRON	SYMPK	ENSG00000125755.19	ENST00000245934.12:ENST00000593504.5:ENST00000599460.5:ENST00000598896.5:ENST00000602061.5:ENST00000598059.5:ENST00000594293.5:ENST00000593959.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	59	2	1.54273	1.591675	1.64062	0.0557275	0.0337312	0.165463	0.146709
chr16	70003858	70003958	6509079	0	-	0.49	(0.476,0.515]	chr16	630286	70	INTRON	INTRON	PDXDC2P-NPIPB14P	ENSG00000196696.13	ENST00000531894.5:ENST00000530079.5:ENST00000525331.6:ENST00000526478.5:ENST00000529089.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	31	223	2	1.39111	1.591615	1.79212	0.0138723	0.00204112	0.0954388	0.041855
chr5	171395969	171396069	2546651	0	+	0.49	(0.476,0.515]	chr5	243099	26	INTRON	INTRON	NPM1	ENSG00000181163.14	ENST00000517671.5:ENST00000676613.1:ENST00000678186.1:ENST00000678267.1:ENST00000677297.1:ENST00000521672.6:ENST00000679190.1:ENST00000677467.1:ENST00000678280.1:ENST00000676625.1:ENST00000679006.1:ENST00000351986.10:ENST00000676504.1:ENST00000676589.1:ENST00000677357.1:ENST00000679233.1:ENST00000296930.10:ENST00000393820.2:ENST00000521260.2:ENST00000518587.2:ENST00000678774.1:ENST00000677600.1:ENST00000677741.1:ENST00000677325.1:ENST00000677672.1:ENST00000677907.1:ENST00000677904.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	17	126	2	1.54352	1.59151	1.6395	0.0165511	0.0108092	0.110511	0.0870809
chr16	2754542	2754641	6279835	0	+	0.545455	(0.515,0.57]	chr16	600760	5	INTRON	INTRON	SRRM2	ENSG00000167978.17	ENST00000576924.5:ENST00000301740.13:ENST00000575009.5:ENST00000576894.5:ENST00000575701.4:ENST00000630499.2:ENST00000576415.5:ENST00000571378.5:ENST00000574340.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	12	75	2	1.32091	1.591495	1.86208	0.0433059	0.0107937	0.162255	0.0869599
chr6	135218874	135218974	2962551	0	+	0.37	(0.35,0.378]	chr6	278666	10	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	MYB	ENSG00000118513.20	ENST00000341911.10:ENST00000442647.7:ENST00000316528.12:ENST00000616088.4:ENST00000339290.9:ENST00000367812.6:ENST00000463282.6:ENST00000525477.5:ENST00000533837.5:ENST00000367814.8:ENST00000525369.5:ENST00000438901.6:ENST00000525514.5:ENST00000526320.5:ENST00000526889.5:ENST00000529586.5:ENST00000531519.5:ENST00000533808.5:ENST00000531845.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	15	124	2	1.36055	1.5912950000000001	1.82204	0.0337743	0.00874368	0.146709	0.0788605
chr8	11823743	11823840	3702740	0	+	0.463918	(0.44,0.476]	chr8	343510	15	INTRON	INTRON	FDFT1	ENSG00000079459.13	ENST00000538689.4:ENST00000615631.4:ENST00000618539.4:ENST00000623368.3:ENST00000446331.6:ENST00000443614.6:ENST00000220584.9:ENST00000525607.5:ENST00000525283.5:ENST00000529464.5:ENST00000525900.5:ENST00000528812.5:ENST00000622850.2:ENST00000530664.5:ENST00000525954.5:ENST00000531249.2:ENST00000532266.5:ENST00000528643.5:ENST00000525777.5:ENST00000528729.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	24	171	2	1.18829	1.591205	1.99412	0.0306728	0.00226571	0.143385	0.0425712
chr7	121260231	121260331	3396373	0	+	0.29	(0.28,0.32]	chr7	317793	155	INTRON	INTRON	CPED1	ENSG00000106034.18	ENST00000310396.10:ENST00000450913.6:ENST00000423795.5:ENST00000466055.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	83	2	1.53798	1.5911499999999998	1.64432	0.0606133	0.0287839	0.171142	0.140044
chr6	31540664	31540761	3078832	0	-	0.484536	(0.476,0.515]	chr6	286769	1	EXON_MRNA	EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DDX39B	ENSG00000198563.14	ENST00000458640.5:ENST00000462256.5:ENST00000396172.6:ENST00000482195.5:ENST00000431908.5:ENST00000481456.1:ENST00000427214.5:ENST00000428098.5:ENST00000419338.5:ENST00000456662.5:ENST00000428450.5:ENST00000449757.5:ENST00000456976.5:ENST00000418897.5:ENST00000419020.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	58	2	1.34326	1.59103	1.8388	0.0564473	0.0529391	0.184423	0.161923
chrX	73850425	73850525	7838028	0	-	0.38	(0.378,0.408]	chrX	799611	131	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	XIST	ENSG00000229807.13	ENST00000650627.1:ENST00000434839.3:ENST00000429829.6:ENST00000635841.2:ENST00000650637.1:ENST00000648970.1	lncRNA	lncRNA	lncRNA	lncRNA	31	225	2	1.44247	1.590965	1.73946	0.00753834	0.00572925	0.0773151	0.0657377
chr10	125090713	125090813	4713637	0	-	0.38	(0.378,0.408]	chr10	434903	20	INTRON	INTRON	CTBP2	ENSG00000175029.17	ENST00000337195.9:ENST00000411419.6:ENST00000494626.6:ENST00000531469.5:ENST00000460976.5:ENST00000476817.1:ENST00000530884.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	94	2	1.5109	1.590815	1.67073	0.0265396	0.0219426	0.123836	0.12286
chr11	65438250	65438350	4805925	0	+	0.27	[0,0.28]	chr11	446554	156	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	26	284	2	1.32585	1.5908099999999998	1.85577	0.0411037	0.00248094	0.1451	0.0460771
chr3	21577988	21578088	1387688	0	+	0.56	(0.515,0.57]	chr3	145351	346	INTRON	INTRON	ZNF385D-AS1	ENSG00000225542.2	ENST00000662195.1:ENST00000412369.1	lncRNA	lncRNA	lncRNA	lncRNA	8	51	2	1.43219	1.5906950000000002	1.7492	0.0483322	0.0382504	0.15832	0.153415
chr16	3157389	3157483	6433360	0	-	0.585106	(0.57,1]	chr16	619160	8	EXON_LNCRNA	EXON_LNCRNA	ENSG00000261889	ENSG00000261889.1	ENST00000570843.1	lncRNA	lncRNA	lncRNA	lncRNA	50	183	2	1.46874	1.59057	1.7124	0.00453958	4.52724e-4	0.0595107	0.0192381
chr10	28546753	28546853	4413941	0	+	0.3	(0.28,0.32]	chr10	407148	83	INTRON	INTRON	WAC	ENSG00000095787.24	ENST00000680735.1:ENST00000375664.8:ENST00000428935.6:ENST00000651598.1:ENST00000628285.3:ENST00000681112.1:ENST00000679570.1:ENST00000375646.5:ENST00000354911.9:ENST00000347934.8:ENST00000420266.6:ENST00000651885.1:ENST00000651441.1:ENST00000679398.1:ENST00000424454.5:ENST00000442148.6:ENST00000448193.5:ENST00000414108.6:ENST00000679428.1:ENST00000439676.5:ENST00000345541.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	69	2	1.31424	1.59054	1.86684	0.0605813	0.0580847	0.188651	0.171122
chr12	132772409	132772508	5449619	0	-	0.626263	(0.57,1]	chr12	521962	20	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	GOLGA3	ENSG00000090615.16	ENST00000204726.9:ENST00000450791.8:ENST00000693666.1:ENST00000690057.1:ENST00000688114.1:ENST00000687190.1:ENST00000690511.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	13	43	2	1.16889	1.590525	2.01216	0.0483349	0.0163389	0.172077	0.101571
chr11	9282334	9282433	4909102	0	-	0.383838	(0.378,0.408]	chr11	460125	18	UTR3	UTR3:EXON_MRNA:INTRON	TMEM41B	ENSG00000166471.11	ENST00000524543.5:ENST00000528080.6:ENST00000299596.8:ENST00000611268.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	94	703	2	1.44105	1.590315	1.73958	0.00600958	5.35627e-4	0.0674604	0.0209232
chr5	53988213	53988313	2617686	0	-	0.53	(0.515,0.57]	chr5	248835	762	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	26	160	2	1.42041	1.590315	1.76022	0.0130026	0.0027225	0.093385	0.0481753
chr19	49488236	49488329	7089817	0	+	0.55914	(0.515,0.57]	chr19	709951	2	INTRON	INTRON	RPL13A	ENSG00000142541.18	ENST00000679106.1:ENST00000621674.4:ENST00000624069.3:ENST00000678510.1:ENST00000676477.1:ENST00000391857.9:ENST00000488946.1:ENST00000484279.5:ENST00000486930.6:ENST00000472481.5:ENST00000677048.1:ENST00000678146.1:ENST00000479992.5:ENST00000676556.1:ENST00000477613.6:ENST00000467825.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	57	2	1.14686	1.5902349999999998	2.03361	0.0671586	0.0325854	0.183051	0.145164
chr7	10724805	10724905	3484028	0	-	0.29	(0.28,0.32]	chr7	325772	1629	INTRON	INTRON	MGC4859	ENSG00000283117.1	ENST00000634803.1	lncRNA	lncRNA	lncRNA	lncRNA	10	96	2	1.45235	1.59022	1.72809	0.0543728	0.0197186	0.164972	0.120131
chr7	10766286	10766386	3484443	0	-	0.33	(0.32,0.35]	chr7	325772	2044	INTRON	INTRON	MGC4859	ENSG00000283117.1	ENST00000634803.1	lncRNA	lncRNA	lncRNA	lncRNA	11	94	2	1.53859	1.590135	1.64168	0.0534261	0.014976	0.162935	0.107704
chr21	22332300	22332400	7385691	0	+	0.52	(0.515,0.57]	chr21	752727	1191	INTRON	INTRON	ENSG00000226043	ENSG00000226043.2	ENST00000667099.1:ENST00000654607.1:ENST00000444130.1	lncRNA	lncRNA	lncRNA	lncRNA	7	45	2	1.43029	1.5897450000000002	1.7492	0.0645632	0.0382504	0.179192	0.15832
chrX	111691368	111691468	7702120	0	+	0.44	(0.408,0.44]	chrX	788221	13	INTRON	INTRON	ALG13	ENSG00000101901.12	ENST00000487141.5:ENST00000394780.8:ENST00000251943.8:ENST00000610588.4:ENST00000621367.4:ENST00000622997.3:ENST00000624161.3:ENST00000636363.1:ENST00000624881.3:ENST00000495283.5:ENST00000486353.5:ENST00000623144.3:ENST00000470971.5:ENST00000623148.3:ENST00000471924.5:ENST00000436609.5:ENST00000470704.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	53	2	1.43792	1.5895000000000001	1.74108	0.062843	0.0424099	0.196433	0.148082
chr16	22508194	22508293	6322691	0	+	0.515152	(0.476,0.515]	chr16	605452	4	INTRON	INTRON	NPIPB5	ENSG00000243716.11	ENST00000415654.5:ENST00000415833.6:ENST00000546168.5:ENST00000543407.5:ENST00000356156.7:ENST00000541154.5:ENST00000545375.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	18	124	2	1.03091	1.58938	2.14785	0.0710694	0.00197135	0.185182	0.0411469
chr16	22508391	22508490	6322693	0	+	0.50505	(0.476,0.515]	chr16	605452	6	INTRON	INTRON	NPIPB5	ENSG00000243716.11	ENST00000415654.5:ENST00000415833.6:ENST00000546168.5:ENST00000543407.5:ENST00000356156.7:ENST00000541154.5:ENST00000545375.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	12	84	2	1.10747	1.589315	2.07116	0.0788376	0.00731321	0.198814	0.076234
chr11	9298583	9298683	4909275	0	-	0.41	(0.408,0.44]	chr11	460156	28	INTRON	INTRON	TMEM41B	ENSG00000166471.11	ENST00000524543.5:ENST00000528080.6:ENST00000299596.8:ENST00000611268.4:ENST00000527813.5:ENST00000533723.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	65	2	1.5375	1.58906	1.64062	0.0557275	0.0261451	0.165463	0.133676
chr12	46359063	46359161	5316550	0	-	0.377551	(0.35,0.378]	chr12	505763	10	UTR3	UTR3:EXON_MRNA	SLC38A2	ENSG00000134294.14	ENST00000256689.10:ENST00000549258.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	29	230	2	1.48121	1.58899	1.69677	0.0146548	0.00299474	0.0982821	0.0504339
chr16	8028023	8028123	6440789	0	-	0.48	(0.476,0.515]	chr16	620351	204	INTRON	INTRON	ENSG00000260289	ENSG00000260289.2	ENST00000670665.1:ENST00000654046.1:ENST00000567103.2	lncRNA	lncRNA	lncRNA	lncRNA	9	67	2	1.38864	1.588905	1.78917	0.0547008	0.022887	0.182743	0.118056
chr7	100346958	100347056	3364448	0	+	0.377551	(0.35,0.378]	chr7	314647	6	INTRON	INTRON	STAG3L5P:STAG3L5P-PVRIG2P-PILRB	ENSG00000242294.6:ENSG00000272752.6	ENST00000473757.5:ENST00000470714.5:ENST00000310771.8:ENST00000483329.6:ENST00000444874.5:ENST00000488972.6:ENST00000493499.1	lncRNA	retained_intron	lncRNA:transcribed_unprocessed_pseudogene	retained_intron:lncRNA:processed_transcript	10	80	2	1.46325	1.58868	1.71411	0.0346125	0.0310697	0.148144	0.13151
chr7	23525912	23526011	3503894	0	-	0.353535	(0.35,0.378]	chr7	326970	31	INTRON	INTRON	TRA2A	ENSG00000164548.12	ENST00000297071.9:ENST00000392502.8:ENST00000538367.6:ENST00000621813.4:ENST00000494255.5:ENST00000474586.5:ENST00000490942.1:ENST00000448549.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	12	98	2	1.22527	1.588555	1.95184	0.0773701	0.0052326	0.196285	0.0656295
chr7	23446489	23446589	3503427	0	-	0.46	(0.44,0.476]	chr7	326910	153	INTRON	INTRON	IGF2BP3	ENSG00000136231.14	ENST00000258729.8:ENST00000421467.6:ENST00000468263.5:ENST00000491719.5:ENST00000476938.5:ENST00000468005.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	73	2	1.37831	1.58852	1.79873	0.0447298	0.0223888	0.163255	0.116918
chr7	139370387	139370487	3437693	0	+	0.37	(0.35,0.378]	chr7	320318	97	INTRON	INTRON	LUC7L2:FMC1-LUC7L2	ENSG00000146963.18:ENSG00000269955.2	ENST00000541170.7:ENST00000541515.3:ENST00000608368.5:ENST00000619796.4:ENST00000354926.9:ENST00000435096.1:ENST00000456182.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	38	261	2	1.1902	1.588385	1.98657	0.0183333	0.00281569	0.115913	0.047222600000000003
chr21	37224578	37224674	7461936	0	-	0.40625	(0.378,0.408]	chr21	760203	13	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	VPS26C	ENSG00000157538.14	ENST00000399000.7:ENST00000497493.1:ENST00000309117.11	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	48	2	1.58349	1.58833	1.59317	0.0653091	0.0603812	0.19151	0.180158
chr7	10544196	10544296	3482221	0	-	0.35	(0.32,0.35]	chr7	325766	911	INTRON	INTRON	MGC4859	ENSG00000283117.1	ENST00000634803.1	lncRNA	lncRNA	lncRNA	lncRNA	7	63	2	1.50185	1.5878899999999998	1.67393	0.0589483	0.0496128	0.174685	0.167915
chr21	39312747	39312840	7465535	0	-	0.763441	(0.57,1]	chr21	760570	3	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	BRWD1	ENSG00000185658.14	ENST00000333229.6:ENST00000342449.8:ENST00000380800.7:ENST00000341322.4:ENST00000470108.5:ENST00000484090.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	16	61	2	1.32369	1.587885	1.85208	0.043307	0.00266287	0.148082	0.0476317
chr11	3769434	3769530	4894885	0	-	0.395833	(0.378,0.408]	chr11	458896	3	INTRON	INTRON	NUP98	ENSG00000110713.17	ENST00000359171.8:ENST00000324932.12:ENST00000650171.1:ENST00000355260.7:ENST00000397004.8:ENST00000397007.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	70	2	1.45934	1.587765	1.71619	0.0442931	0.0300647	0.162302	0.129153
chr8	11804999	11805097	3702544	0	+	0.5	(0.476,0.515]	chr8	343487	11	INTRON	INTRON	FDFT1	ENSG00000079459.13	ENST00000538689.4:ENST00000615631.4:ENST00000618539.4:ENST00000530337.5:ENST00000623368.3:ENST00000446331.6:ENST00000443614.6:ENST00000220584.9:ENST00000525607.5:ENST00000525283.5:ENST00000529464.5:ENST00000525900.5:ENST00000528812.5:ENST00000622850.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	27	191	2	1.50914	1.587755	1.66637	0.0212469	0.00248925	0.11322	0.0461726
chr16	85575444	85575544	6415586	0	+	0.51	(0.476,0.515]	chr16	615470	187	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	19	137	2	1.37675	1.58773	1.79871	0.0234779	0.00554225	0.118716	0.0674105
chr1	23328923	23329023	399434	0	-	0.43	(0.408,0.44]	chr1	47865	48	INTRON	INTRON	HNRNPR	ENSG00000125944.21	ENST00000478691.5:ENST00000302271.11:ENST00000374616.7:ENST00000374612.5:ENST00000675048.1:ENST00000606561.5:ENST00000427764.3:ENST00000463552.5:ENST00000470941.5:ENST00000476451.2	protein_coding	protein_coding	protein_coding	protein_coding	24	161	2	1.29656	1.5876350000000001	1.87871	0.0172461	0.00625147	0.111709	0.0684077
chr1	204533918	204534018	297597	0	+	0.46	(0.44,0.476]	chr1	34289	7	INTRON	INTRON	MDM4	ENSG00000198625.14	ENST00000367183.7:ENST00000391947.6:ENST00000454264.6:ENST00000612738.4:ENST00000614459.4:ENST00000616250.4:ENST00000367182.8:ENST00000463049.5:ENST00000470908.5:ENST00000471783.1:ENST00000367180.5:ENST00000507825.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	34	244	2	1.52918	1.58746	1.64574	0.00526006	0.00505685	0.0646039	0.0633874
chr1	39572126	39572205	427748	0	-	0.392405	(0.378,0.408]	chr1	51945	4	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PABPC4	ENSG00000090621.15	ENST00000677006.1:ENST00000372858.8:ENST00000372856.7:ENST00000372857.7:ENST00000372862.7:ENST00000676523.1:ENST00000677548.1:ENST00000678980.1:ENST00000677244.1:ENST00000677609.1:ENST00000679246.1:ENST00000678287.1:ENST00000678625.1:ENST00000470443.6:ENST00000421687.6:ENST00000677644.1:ENST00000474378.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	86	2	1.38218	1.58744	1.7927	0.0444424	0.0163057	0.162728	0.101571
chr20	49285974	49286073	7284681	0	+	0.494949	(0.476,0.515]	chr20	741065	38	INTRON	INTRON	ZFAS1	ENSG00000177410.13	ENST00000371743.8:ENST00000417721.5:ENST00000441722.5:ENST00000450535.5:ENST00000458653.5:ENST00000428008.6:ENST00000620594.2:ENST00000652916.1:ENST00000326677.9:ENST00000659056.1	lncRNA	lncRNA	lncRNA	lncRNA	24	175	2	1.3762	1.586985	1.79777	0.0167965	0.00393554	0.110672	0.0548259
chr16	31121676	31121769	6340443	0	+	0.322581	(0.32,0.35]	chr16	608276	7	INTRON	INTRON	KAT8	ENSG00000103510.20	ENST00000543774.6:ENST00000219797.9:ENST00000448516.6	protein_coding	protein_coding	protein_coding	protein_coding	14	125	2	1.1708	1.586885	2.00297	0.0641583	0.00606785	0.199375	0.0676501
chr18	9954211	9954309	6873755	0	+	0.377551	(0.35,0.378]	chr18	680907	1	UTR3	UTR3:EXON_MRNA	VAPA	ENSG00000101558.14	ENST00000400000.7:ENST00000340541.4:ENST00000583879.5:ENST00000583475.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	48	372	2	1.54076	1.586875	1.63299	0.00506937	0.00328185	0.0622433	0.0527031
chr10	125083295	125083395	4713562	0	-	0.52	(0.515,0.57]	chr10	434897	438	INTRON	INTRON	CTBP2	ENSG00000175029.17	ENST00000337195.9:ENST00000411419.6:ENST00000494626.6:ENST00000531469.5:ENST00000460976.5:ENST00000476817.1:ENST00000530884.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	14	89	2	1.57405	1.586835	1.59962	0.0221119	0.0134611	0.123903	0.0947688
chr19	21406356	21406444	7040915	0	+	0.340909	(0.32,0.35]	chr19	702027	1	INTRON	INTRON	ZNF493	ENSG00000196268.12	ENST00000596302.5:ENST00000392288.7:ENST00000355504.4:ENST00000594390.5:ENST00000339914.6:ENST00000598152.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	54	2	1.55682	1.5867550000000001	1.61669	0.0724487	0.0578816	0.188651	0.188101
chr4	82841639	82841739	2179576	0	-	0.42	(0.408,0.44]	chr4	214268	1	SS5_PROX	SS5_PROX:INTRON	SEC31A	ENSG00000138674.17	ENST00000395310.7:ENST00000513858.5:ENST00000348405.8:ENST00000503937.5:ENST00000448323.5:ENST00000311785.11:ENST00000509142.5:ENST00000443462.6:ENST00000500777.6:ENST00000505472.5:ENST00000355196.6:ENST00000508502.5:ENST00000264405.9:ENST00000505984.5:ENST00000511338.1:ENST00000515749.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	28	197	2	1.50603	1.586565	1.6671	0.00856105	0.00607914	0.078103	0.0704496
chr7	152432326	152432426	3681257	0	-	0.29	(0.28,0.32]	chr7	341660	733	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000682301.1:ENST00000452749.2:ENST00000680867.1:ENST00000683800.1:ENST00000684278.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	15	142	2	1.58084	1.586525	1.59221	0.0248774	0.0157727	0.12011	0.109464
chr1	22057998	22058098	42254	0	+	0.5	(0.476,0.515]	chr1	5072	18	INTRON	INTRON	ENSG00000289694:CDC42	ENSG00000289694.1:ENSG00000070831.18	ENST00000695855.1:ENST00000695856.1:ENST00000344548.8:ENST00000400259.5:ENST00000667384.2:ENST00000411827.2:ENST00000695858.1:ENST00000695857.1:ENST00000315554.14:ENST00000695859.1:ENST00000498236.1:ENST00000656825.1:ENST00000651171.1:ENST00000652582.1:ENST00000695860.1:ENST00000695796.1:ENST00000695797.1:ENST00000662562.2:ENST00000695798.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	88	2	1.41081	1.58649	1.76217	0.0430655	0.0111778	0.148082	0.0937192
chr5	149496454	149496554	2750512	0	-	0.35	(0.32,0.35]	chr5	258992	36	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	CSNK1A1:ENSG00000230551	ENSG00000113712.19:ENSG00000230551.4	ENST00000261798.10:ENST00000377843.8:ENST00000657001.1:ENST00000499521.2:ENST00000515768.6:ENST00000606719.6:ENST00000657462.1:ENST00000661952.1:ENST00000504676.5:ENST00000515435.5:ENST00000662268.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	16	134	2	1.48841	1.58643	1.68445	0.0198208	0.0162848	0.109608	0.109464
chr2	55012234	55012333	1121023	0	-	0.373737	(0.35,0.378]	chr2	120147	19	INTRON	INTRON	RTN4	ENSG00000115310.19	ENST00000404909.5:ENST00000394611.6:ENST00000317610.11:ENST00000357732.8:ENST00000337526.11:ENST00000357376.7:ENST00000405240.5:ENST00000438462.1	protein_coding	protein_coding	protein_coding	protein_coding	10	76	2	1.422	1.586405	1.75081	0.0427459	0.032366	0.148082	0.145026
chr9	91336646	91336745	4280970	0	-	0.333333	(0.32,0.35]	chr9	393803	109	INTRON	INTRON	AUH	ENSG00000148090.12	ENST00000303617.5:ENST00000375731.9:ENST00000478465.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	69	2	1.55682	1.586365	1.61591	0.0724487	0.0277247	0.188101	0.137011
chr17	77319977	77320064	6679828	0	+	0.62069	(0.57,1]	chr17	652484	3	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	SEPTIN9	ENSG00000184640.20	ENST00000589070.1:ENST00000591833.5:ENST00000591198.5:ENST00000427177.6:ENST00000590576.5:ENST00000431235.6:ENST00000449803.6:ENST00000587237.1:ENST00000329047.13:ENST00000588575.1:ENST00000590595.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	31	2	1.52818	1.586165	1.64415	0.0508101	0.0342575	0.175989	0.135558
chr5	10253350	10253448	2317495	0	+	0.316327	(0.28,0.32]	chr5	224551	21	INTRON	INTRON	CCT5	ENSG00000150753.12	ENST00000503026.5:ENST00000515390.5:ENST00000511700.1:ENST00000280326.9:ENST00000508451.1:ENST00000423695.6:ENST00000512975.5:ENST00000510326.5:ENST00000625723.1:ENST00000503454.5:ENST00000515676.5:ENST00000506600.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	59	2	1.56134	1.5858249999999998	1.61031	0.0740624	0.0600513	0.191153	0.190658
chr7	152329501	152329601	3680224	0	-	0.43	(0.408,0.44]	chr7	341641	138	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000684262.1:ENST00000682301.1:ENST00000452749.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	14	103	2	1.45405	1.58575	1.71745	0.0381812	0.0079291	0.141795	0.0797304
chrX	134394498	134394598	7723716	0	+	0.42	(0.408,0.44]	chrX	790118	4	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	PHF6	ENSG00000156531.18	ENST00000685047.1:ENST00000687496.1:ENST00000685553.1:ENST00000625464.2:ENST00000370803.8:ENST00000332070.7:ENST00000370799.5:ENST00000691812.1:ENST00000688598.1:ENST00000693759.1:ENST00000370800.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	13	96	2	1.4846	1.585665	1.68673	0.034616	0.011464	0.136674	0.0956037
chr19	28511129	28511229	7166206	0	-	0.54	(0.515,0.57]	chr19	724189	429	INTRON	INTRON	ENSG00000283403:ENSG00000267243	ENSG00000283403.1:ENSG00000267243.6	ENST00000592347.5:ENST00000593065.5	lncRNA	lncRNA	lncRNA	lncRNA	8	50	2	1.28871	1.58565	1.88259	0.0731249	0.0251849	0.189597	0.133519
chr8	31071604	31071703	3728317	0	+	0.525253	(0.515,0.57]	chr8	346558	29	INTRON	INTRON	WRN	ENSG00000165392.11	ENST00000650667.1:ENST00000298139.7:ENST00000651642.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	50	2	1.28871	1.58565	1.88259	0.0731249	0.0251849	0.189597	0.133519
chr21	43908801	43908901	7414228	0	+	0.54	(0.515,0.57]	chr21	755698	44	INTRON	INTRON	AGPAT3	ENSG00000160216.21	ENST00000291572.13:ENST00000448287.5:ENST00000398061.5:ENST00000327505.6	protein_coding	protein_coding	protein_coding	protein_coding	8	51	2	1.48539	1.585455	1.68552	0.0553982	0.0292028	0.165463	0.141637
chr7	121142541	121142641	3395193	0	+	0.3	(0.28,0.32]	chr7	317776	4	SS5_PROX	SS5_PROX:INTRON	CPED1	ENSG00000106034.18	ENST00000310396.10:ENST00000450913.6:ENST00000423795.5	protein_coding	protein_coding	protein_coding	protein_coding	12	108	2	1.22487	1.585185	1.9455	0.0561181	0.016777	0.18407	0.103294
chr17	47214219	47214319	6621400	0	+	0.38	(0.378,0.408]	chr17	645805	3	SS5_PROX	SS5_PROX:INTRON	MYL4	ENSG00000198336.9	ENST00000571981.5:ENST00000572316.5:ENST00000354968.5:ENST00000570772.5:ENST00000536623.6:ENST00000576874.5:ENST00000573747.6:ENST00000393450.5:ENST00000572303.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	14	103	2	1.46344	1.584985	1.70653	0.0219966	0.0192847	0.119831	0.115395
chr7	99566902	99567002	3362777	0	+	0.41	(0.408,0.44]	chr7	314147	23	INTRON	INTRON	ZNF655	ENSG00000197343.11	ENST00000626122.2:ENST00000454654.5:ENST00000412636.5:ENST00000252713.9:ENST00000449244.5:ENST00000493947.5:ENST00000425063.5:ENST00000493277.5:ENST00000422164.5:ENST00000427931.5:ENST00000422647.5:ENST00000424881.5:ENST00000394163.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	20	139	2	1.15961	1.584965	2.01032	0.0419578	0.00377558	0.14764	0.0562562
chr17	81563744	81563832	6848843	0	-	0.329545	(0.32,0.35]	chr17	678119	3	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS3_PROX:SS5_PROX:INTRON	NPLOC4	ENSG00000182446.14	ENST00000331134.11:ENST00000572760.5:ENST00000572346.5:ENST00000573519.5:ENST00000573876.1:ENST00000571714.5:ENST00000572824.1:ENST00000573212.5:ENST00000576713.6:ENST00000374747.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	19	158	2	1.49278	1.58491	1.67704	0.0163553	0.0125873	0.101654	0.0980703
chr1	203801542	203801640	296739	0	+	0.336735	(0.32,0.35]	chr1	34131	12	UTR3	UTR3:UTR5:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS5_ADJ:SS3_PROX:SS5_PROX:INTRON	ZC3H11A:ZBED6	ENSG00000058673.17:ENSG00000257315.3	ENST00000367210.3:ENST00000453771.5:ENST00000432282.5:ENST00000466470.5:ENST00000638800.1:ENST00000461980.1:ENST00000367214.5:ENST00000639812.1:ENST00000367212.7:ENST00000332127.8:ENST00000550078.2:ENST00000495527.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	13	110	2	1.34874	1.584705	1.82067	0.0362121	0.0163349	0.152849	0.101571
chr10	992959	993059	4379039	0	+	0.44	(0.408,0.44]	chr10	403822	3	SS5_PROX	SS5_PROX:INTRON	GTPBP4	ENSG00000107937.19	ENST00000360803.9:ENST00000491635.1:ENST00000360059.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	91	2	1.4609	1.5845250000000002	1.70815	0.0340889	0.0159677	0.146815	0.101453
chr1	155734320	155734419	229983	0	+	0.393939	(0.378,0.408]	chr1	27059	19	INTRON	INTRON	DAP3	ENSG00000132676.16	ENST00000471642.6:ENST00000343043.7:ENST00000368336.10:ENST00000535183.5:ENST00000421487.6:ENST00000477394.5:ENST00000475056.5:ENST00000490249.5:ENST00000463295.1	protein_coding	protein_coding	protein_coding	protein_coding	13	94	2	1.08425	1.584525	2.0848	0.078365	0.00697927	0.197719	0.0754576
chr4	128091712	128091812	2042905	0	+	0.52	(0.515,0.57]	chr4	202877	2	SS5_PROX	SS5_PROX:INTRON	LARP1B	ENSG00000138709.19	ENST00000512292.5:ENST00000326639.11:ENST00000508819.5:ENST00000394288.7:ENST00000432347.6:ENST00000649983.1:ENST00000650359.1:ENST00000648358.1:ENST00000507377.1	protein_coding	protein_coding	protein_coding	protein_coding	6	39	2	1.56681	1.5845099999999999	1.60221	0.064862	0.0581855	0.188704	0.179394
chr11	66649635	66649735	4811144	0	+	0.36	(0.35,0.378]	chr11	447910	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	RBM4	ENSG00000173933.21	ENST00000396053.9:ENST00000578778.5:ENST00000506523.6	protein_coding	protein_coding	protein_coding	protein_coding	15	121	2	1.45569	1.584495	1.7133	0.0281398	0.0107613	0.125308	0.0920575
chr7	105054982	105055082	3375032	0	+	0.42	(0.408,0.44]	chr7	315877	136	INTRON	INTRON	KMT2E	ENSG00000005483.22	ENST00000622386.2:ENST00000257745.9:ENST00000334884.9:ENST00000311117.8:ENST00000478990.5:ENST00000495267.5:ENST00000476671.5:ENST00000667857.1:ENST00000474203.5:ENST00000482560.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	64	2	1.38001	1.58441	1.78881	0.0444754	0.0370259	0.162826	0.139194
chr10	5451229	5451329	4384248	0	+	0.42	(0.408,0.44]	chr10	404411	40	INTRON	INTRON	NET1	ENSG00000173848.19	ENST00000355029.9:ENST00000449083.5:ENST00000486354.1:ENST00000380359.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	55	2	1.42102	1.584385	1.74775	0.0735403	0.0389354	0.190238	0.160836
chr17	28327091	28327191	6584155	0	+	0.45	(0.44,0.476]	chr17	639928	4	UTR3	UTR3:EXON_MRNA	TMEM97	ENSG00000109084.14	ENST00000226230.8:ENST00000582384.1:ENST00000336687.6	protein_coding	protein_coding	protein_coding	protein_coding	24	171	2	1.30313	1.58432	1.86551	0.0228956	0.00317041	0.118056	0.051761
chrX	121240116	121240216	7715591	0	+	0.47	(0.44,0.476]	chrX	789390	539	INTRON	INTRON	ENSG00000286163	ENSG00000286163.1	ENST00000651788.1	lncRNA	lncRNA	lncRNA	lncRNA	7	53	2	1.47433	1.5841750000000001	1.69402	0.0595438	0.0456129	0.16883600000000001	0.164236
chr3	197951898	197951968	1598748	0	+	0.442857	(0.44,0.476]	chr3	165707	2	INTRON	INTRON	RPL35A	ENSG00000182899.17	ENST00000647248.2:ENST00000448864.6:ENST00000485439.5:ENST00000642387.1:ENST00000329092.12:ENST00000429437.5:ENST00000442341.5:ENST00000439255.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	69	2	1.53934	1.58415	1.62896	0.0546679	0.0286379	0.182674	0.126977
chr9	137574007	137574107	4377571	0	-	0.42	(0.408,0.44]	chr9	403638	4	SS5_PROX	SS5_PROX:INTRON	DPH7	ENSG00000148399.13	ENST00000277540.7:ENST00000479650.5:ENST00000475100.5:ENST00000472113.5:ENST00000485189.5:ENST00000467768.5:ENST00000477690.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	69	2	1.28785	1.58381	1.87977	0.0494367	0.0282738	0.174213	0.125825
chr20	58892806	58892906	7291023	0	+	0.56	(0.515,0.57]	chr20	741822	3	SS5_PROX	SS5_PROX:INTRON	GNAS	ENSG00000087460.29	ENST00000313949.11:ENST00000371075.7:ENST00000419558.7:ENST00000371098.6:ENST00000657090.1:ENST00000453292.7:ENST00000306090.12:ENST00000491348.5:ENST00000472183.6:ENST00000462499.6:ENST00000482112.6:ENST00000663479.2:ENST00000493744.5:ENST00000490374.6:ENST00000467227.6:ENST00000676826.2:ENST00000481768.6:ENST00000371100.9:ENST00000371102.8:ENST00000464624.7:ENST00000349036.9:ENST00000423897.7:ENST00000464960.5:ENST00000488546.6:ENST00000667293.2:ENST00000481039.6:ENST00000467321.6:ENST00000477931.5:ENST00000485673.6:ENST00000470512.6:ENST00000464788.6:ENST00000469431.6:ENST00000604005.6:ENST00000478585.6:ENST00000480975.5:ENST00000480232.6:ENST00000484504.5:ENST00000683015.1:ENST00000461152.6:ENST00000371095.7:ENST00000265620.11:ENST00000354359.12:ENST00000371085.8:ENST00000468895.6:ENST00000371081.5:ENST00000338783.7:ENST00000682803.1:ENST00000488652.6:ENST00000476935.6:ENST00000492907.6:ENST00000603546.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	12	76	2	1.48827	1.58377	1.67927	0.0301583	0.0157733	0.142572	0.101453
chr4	55404136	55404236	1960672	0	+	0.47	(0.44,0.476]	chr4	196553	4	INTRON	INTRON	TMEM165	ENSG00000134851.13	ENST00000381334.10:ENST00000506198.5:ENST00000508404.5:ENST00000511710.1:ENST00000502797.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	19	138	2	1.42895	1.583715	1.73848	0.024833	0.00481865	0.12011	0.0638819
chr17	20899528	20899628	6576377	0	+	0.42	(0.408,0.44]	chr17	639388	5	INTRON	INTRON	CCDC144NL-AS1	ENSG00000233098.10	ENST00000577537.5:ENST00000692759.1:ENST00000443508.8:ENST00000692309.1:ENST00000439794.6:ENST00000417232.6:ENST00000583962.2:ENST00000577860.5	lncRNA	lncRNA	lncRNA	lncRNA	9	67	2	1.58026	1.58324	1.58622	0.0444624	0.0291748	0.149888	0.141552
chr3	196066283	196066375	1897386	0	-	0.48913	(0.476,0.515]	chr3	189941	3	INTRON	INTRON	TFRC	ENSG00000072274.13	ENST00000420415.5:ENST00000360110.9:ENST00000392396.7	protein_coding	protein_coding	protein_coding	protein_coding	21	144	2	1.4027	1.583045	1.76339	0.0136736	0.00972118	0.10203	0.0831288
chr1	20782127	20782225	389817	0	-	0.479592	(0.476,0.515]	chr1	46582	12	INTRON	INTRON	HP1BP3	ENSG00000127483.19	ENST00000438032.6:ENST00000312239.10:ENST00000424732.5:ENST00000417710.5:ENST00000375000.5:ENST00000437575.5:ENST00000419490.5:ENST00000414993.1:ENST00000443615.1	protein_coding	protein_coding	protein_coding	protein_coding	10	73	2	1.50151	1.58284	1.66417	0.054954	0.0164481	0.165463	0.110077
chr5	36872746	36872845	2601848	0	-	0.343434	(0.32,0.35]	chr5	247327	15	EXON_LNCRNA	EXON_LNCRNA:SS3_PROX:INTRON	NIPBL-DT	ENSG00000285967.1	ENST00000647750.1:ENST00000649921.1:ENST00000647824.1	lncRNA	lncRNA	lncRNA	lncRNA	9	80	2	1.52721	1.58282	1.63843	0.0417858	0.0360919	0.152563	0.147075
chr3	119458837	119458934	1791938	0	-	0.360825	(0.35,0.378]	chr3	179955	2	INTRON	INTRON	TMEM39A	ENSG00000176142.13	ENST00000319172.10:ENST00000438581.6:ENST00000491685.5:ENST00000486159.5:ENST00000486235.5:ENST00000468676.5:ENST00000490099.5:ENST00000497993.5:ENST00000482162.1:ENST00000461654.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	12	97	2	1.32095	1.58263	1.84431	0.0594109	0.00829753	0.16883600000000001	0.0815587
chr5	113015958	113016057	2453789	0	+	0.333333	(0.32,0.35]	chr5	235130	26	UTR3	UTR3:EXON_MRNA	DCP2	ENSG00000172795.17	ENST00000515408.5:ENST00000389063.3:ENST00000674880.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	16	111	2	1.03529	1.582545	2.1298	0.0641695	0.0141189	0.199407	0.0959618
chr1	65540990	65541090	138395	0	+	0.48	(0.476,0.515]	chr1	15499	148	INTRON	INTRON	LEPR	ENSG00000116678.20	ENST00000371060.7:ENST00000371059.7:ENST00000349533.11:ENST00000616738.4:ENST00000344610.12:ENST00000462765.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	88	2	1.23367	1.582455	1.93124	0.0587374	0.00916342	0.189982	0.0812949
chr3	194450871	194450971	1890830	0	-	0.3	(0.28,0.32]	chr3	189201	7	EXON_MRNA	EXON_MRNA:INTRON	ATP13A3	ENSG00000133657.17	ENST00000687055.1:ENST00000645538.1:ENST00000645319.2:ENST00000690810.1:ENST00000645621.1:ENST00000642744.2:ENST00000439040.6:ENST00000485194.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	17	158	2	1.52333	1.582305	1.64128	0.029991	0.00937974	0.129138	0.0860087
chr21	9124521	9124621	7426585	0	-	0.41	(0.408,0.44]	chr21	757584	1	SS3_PROX	SS3_PROX:INTRON	TEKT4P2	ENSG00000188681.12	ENST00000690061.1:ENST00000689141.1:ENST00000688310.1:ENST00000687537.1:ENST00000690096.1:ENST00000687888.1:ENST00000690389.1:ENST00000684989.1:ENST00000416067.6:ENST00000693307.1:ENST00000692383.1:ENST00000685666.1:ENST00000688451.1:ENST00000691190.1:ENST00000685532.1:ENST00000687488.1:ENST00000690713.1:ENST00000691834.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	9	68	2	1.35436	1.582265	1.81017	0.0603719	0.0217525	0.19151	0.11491
chr11	123061751	123061833	5047179	0	-	0.731707	(0.57,1]	chr11	476163	3	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HSPA8	ENSG00000109971.14	ENST00000453788.6:ENST00000533540.5:ENST00000534624.6:ENST00000532636.5:ENST00000533238.5:ENST00000527983.5:ENST00000528292.5:ENST00000532780.5:ENST00000525463.5:ENST00000532167.5:ENST00000525624.5:ENST00000527387.5:ENST00000532182.5:ENST00000524590.5:ENST00000530391.1:ENST00000531063.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	27	2	1.37384	1.5822349999999998	1.79063	0.0766386	0.0356001	0.196164	0.15159
chr6	87589300	87589400	3152634	0	-	0.45	(0.44,0.476]	chr6	294089	2	SS5_PROX	SS5_PROX:INTRON	RARS2	ENSG00000146282.19	ENST00000691533.1:ENST00000493269.2:ENST00000685069.1:ENST00000691725.1:ENST00000369536.10:ENST00000693431.1:ENST00000685408.1:ENST00000693327.1:ENST00000691205.1:ENST00000689174.1:ENST00000692684.1:ENST00000686988.1:ENST00000690622.1:ENST00000689206.1:ENST00000688532.1:ENST00000686154.1:ENST00000686407.1:ENST00000685701.1:ENST00000689561.1:ENST00000691238.1:ENST00000685336.1:ENST00000686284.1:ENST00000687586.1:ENST00000685376.1:ENST00000685881.1:ENST00000691815.1:ENST00000687090.1:ENST00000451155.2:ENST00000687437.1:ENST00000692394.1:ENST00000687729.1:ENST00000693605.1:ENST00000687909.1:ENST00000688391.1:ENST00000690884.1:ENST00000692843.1:ENST00000684790.1:ENST00000692270.1:ENST00000685219.1:ENST00000689952.1:ENST00000687579.1:ENST00000686857.1:ENST00000690205.1:ENST00000690705.1:ENST00000686142.1:ENST00000688106.1:ENST00000686196.1:ENST00000687078.1:ENST00000690555.1:ENST00000693524.1:ENST00000691259.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	60	2	1.56252	1.5821399999999999	1.60176	0.0465207	0.0389597	0.160861	0.151387
chr16	16521211	16521311	6311074	0	+	0.3	(0.28,0.32]	chr16	604098	212	INTRON	INTRON	ENSG00000260126	ENSG00000260126.2	ENST00000567465.2	lncRNA	lncRNA	lncRNA	lncRNA	13	124	2	1.46548	1.582135	1.69879	0.0299501	0.0205261	0.142135	0.110999
chr1	65540790	65540890	138393	0	+	0.39	(0.378,0.408]	chr1	15499	146	INTRON	INTRON	LEPR	ENSG00000116678.20	ENST00000371060.7:ENST00000371059.7:ENST00000349533.11:ENST00000616738.4:ENST00000344610.12:ENST00000462765.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	66	2	1.34117	1.5818750000000001	1.82258	0.0505568	0.0341279	0.17538	0.135102
chr15	40188552	40188652	6001528	0	+	0.38	(0.378,0.408]	chr15	570623	11	INTRON	INTRON	BUB1B	ENSG00000156970.13	ENST00000412359.7:ENST00000287598.11:ENST00000559733.5:ENST00000557848.1:ENST00000559772.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	66	2	1.34117	1.5818750000000001	1.82258	0.0505568	0.0341279	0.17538	0.135102
chr6	16130356	16130456	2825785	0	+	0.41	(0.408,0.44]	chr6	265304	4	SS3_PROX	SS3_PROX:INTRON	MYLIP	ENSG00000007944.15	ENST00000356840.8:ENST00000349606.4	protein_coding	protein_coding	protein_coding	protein_coding	11	82	2	1.45405	1.58169	1.70933	0.0381812	0.0189186	0.141795	0.118303
chr8	92853929	92854029	3990645	0	-	0.27	[0,0.28]	chr8	365358	675	INTRON	INTRON	FLJ46284	ENSG00000248858.7	ENST00000504861.2	lncRNA	lncRNA	lncRNA	lncRNA	7	77	2	1.55741	1.58167	1.60593	0.0792968	0.0433625	0.199711	0.162255
chr1	51459148	51459248	453747	0	-	0.41	(0.408,0.44]	chr1	54401	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	EPS15	ENSG00000085832.17	ENST00000371733.8:ENST00000371730.6:ENST00000371727.5:ENST00000464478.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	9	67	2	1.27662	1.58156	1.8865	0.0787183	0.0148842	0.198567	0.107116
chr1	182868441	182868541	273285	0	+	0.18	[0,0.28]	chr1	31933	10	INTRON	INTRON	DHX9	ENSG00000135829.17	ENST00000367549.4	protein_coding	protein_coding	protein_coding	protein_coding	13	142	2	1.342	1.5815000000000001	1.821	0.0660009	0.00904629	0.181924	0.0853448
chr14	31020820	31020920	5857818	0	-	0.5	(0.476,0.515]	chr14	556512	57	INTRON	INTRON	STRN3	ENSG00000196792.12	ENST00000355683.9:ENST00000357479.10:ENST00000555358.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	21	143	2	1.29121	1.5809799999999998	1.87075	0.0219373	0.00621846	0.123836	0.0680637
chr1	43913553	43913651	88178	0	+	0.418367	(0.408,0.44]	chr1	11775	18	UTR3	UTR3:EXON_MRNA:INTRON	ST3GAL3	ENSG00000126091.21	ENST00000643597.1:ENST00000372372.7:ENST00000545417.5:ENST00000330208.6:ENST00000335430.10:ENST00000361400.9:ENST00000347631.8:ENST00000642331.1:ENST00000647237.1:ENST00000643252.1:ENST00000372374.7:ENST00000361392.9:ENST00000533997.6:ENST00000353126.8:ENST00000645640.1:ENST00000642934.1:ENST00000643283.1:ENST00000351035.8:ENST00000642949.1:ENST00000489897.6:ENST00000646971.1:ENST00000645142.1:ENST00000645705.1:ENST00000530154.5:ENST00000646027.1:ENST00000646069.1:ENST00000642504.1:ENST00000647148.1:ENST00000262915.8:ENST00000647482.1:ENST00000645394.1:ENST00000647128.1:ENST00000361746.9:ENST00000645034.1:ENST00000645165.1:ENST00000647134.1:ENST00000644195.1:ENST00000642194.1:ENST00000372368.7:ENST00000646686.1:ENST00000372366.6:ENST00000361812.9:ENST00000469715.6:ENST00000372369.5:ENST00000372367.5:ENST00000372365.5:ENST00000528371.5:ENST00000533212.5:ENST00000530581.5:ENST00000531816.1:ENST00000531993.6:ENST00000490541.6:ENST00000372362.6:ENST00000531451.5:ENST00000645117.1:ENST00000533933.6:ENST00000332628.11:ENST00000643813.1:ENST00000644922.1:ENST00000644287.1:ENST00000647503.1:ENST00000461375.2:ENST00000642780.1:ENST00000644645.1:ENST00000645644.1:ENST00000644016.1:ENST00000647299.1:ENST00000644378.1:ENST00000645161.1:ENST00000646032.1:ENST00000643989.1:ENST00000645012.1:ENST00000490502.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	53	2	1.40374	1.580825	1.75791	0.0721345	0.0378795	0.187433	0.157034
chr3	152310938	152311038	1535408	0	+	0.23	[0,0.28]	chr3	159996	86	INTRON	INTRON	MBNL1	ENSG00000152601.18	ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000495875.6:ENST00000324210.10:ENST00000493459.5:ENST00000459747.1:ENST00000460591.5:ENST00000545754.5:ENST00000357472.7:ENST00000324196.9:ENST00000498502.5:ENST00000463374.5:ENST00000485910.5:ENST00000465907.6:ENST00000492948.5:ENST00000485509.5:ENST00000464596.5	protein_coding	protein_coding	protein_coding	protein_coding	41	440	2	1.39266	1.580825	1.76899	0.0215833	0.00252183	0.114814	0.0465056
chr22	19493726	19493826	7476974	0	+	0.4	(0.378,0.408]	chr22	762407	94	INTRON	INTRON	CDC45	ENSG00000093009.11	ENST00000407835.6:ENST00000437685.6:ENST00000483431.5:ENST00000438587.6:ENST00000672837.1:ENST00000263201.7:ENST00000404724.7:ENST00000487669.5:ENST00000428937.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	70	2	1.44787	1.580805	1.71374	0.0496837	0.0274158	0.156383	0.136498
chr8	23567391	23567487	3715485	0	+	0.416667	(0.408,0.44]	chr8	345233	7	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	SLC25A37	ENSG00000147454.14	ENST00000519973.6:ENST00000290075.10:ENST00000417331.6:ENST00000518881.5:ENST00000520654.1:ENST00000523930.1:ENST00000523883.5:ENST00000522164.5:ENST00000521637.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	167	1166	2	1.44205	1.5805850000000001	1.71912	0.00211323	9.85672e-4	0.0425644	0.0287034
chr16	15960983	15961083	6307872	0	+	0.39	(0.378,0.408]	chr16	603510	108	INTRON	INTRON	ABCC1	ENSG00000103222.20	ENST00000574224.2:ENST00000678422.1:ENST00000677164.1:ENST00000399408.7:ENST00000572882.3:ENST00000399410.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	99	2	1.51347	1.580545	1.64762	0.0322039	0.0136375	0.132543	0.101785
chr15	80068093	80068192	6071117	0	+	0.464646	(0.44,0.476]	chr15	578304	70	INTRON	INTRON	ZFAND6	ENSG00000086666.19	ENST00000613266.4:ENST00000561060.5:ENST00000559157.5:ENST00000261749.11:ENST00000561012.5:ENST00000564367.5:ENST00000558494.5:ENST00000618205.4:ENST00000560470.5	protein_coding	protein_coding	protein_coding	protein_coding	21	153	2	1.52537	1.5805099999999999	1.63565	0.0133087	0.00778789	0.094512	0.0787356
chr17	31288523	31288622	6593127	0	+	0.444444	(0.44,0.476]	chr17	641260	228	INTRON	INTRON	NF1	ENSG00000196712.20	ENST00000696138.1:ENST00000356175.7:ENST00000691014.1:ENST00000358273.9:ENST00000579081.5:ENST00000456735.6:ENST00000493220.5:ENST00000687863.1:ENST00000696140.1:ENST00000696141.1:ENST00000581113.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	67	2	1.45853	1.580475	1.70242	0.0470887	0.0282713	0.152251	0.137721
chr11	86048483	86048583	5014637	0	-	0.35	(0.32,0.35]	chr11	473022	165	INTRON	INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000630913.2:ENST00000528398.5:ENST00000356360.9:ENST00000534412.5:ENST00000531558.1:ENST00000531930.5:ENST00000532041.5:ENST00000525162.5:ENST00000528256.1:ENST00000528411.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	19	160	2	1.49199	1.580455	1.66892	0.0308519	0.00576199	0.13151	0.068294
chr4	39725739	39725839	1953268	0	+	0.46	(0.44,0.476]	chr4	195630	270	INTRON	INTRON	UBE2K	ENSG00000078140.14	ENST00000510934.5:ENST00000261427.10:ENST00000438068.6:ENST00000513231.5:ENST00000503368.5:ENST00000445950.2:ENST00000510719.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	58	2	1.4962	1.58041	1.66462	0.0520247	0.0392301	0.161534	0.159508
chr9	37206335	37206435	4118520	0	+	0.62	(0.57,1]	chr9	375389	194	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000461038.5:ENST00000488607.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	14	52	2	1.30159	1.5804	1.85921	0.0400049	0.00662994	0.161534	0.0703181
chr8	23567776	23567872	3715489	0	+	0.270833	[0,0.28]	chr8	345233	11	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	SLC25A37	ENSG00000147454.14	ENST00000519973.6:ENST00000290075.10:ENST00000417331.6:ENST00000518881.5:ENST00000520654.1:ENST00000523930.1:ENST00000523883.5:ENST00000522164.5:ENST00000521637.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	109	1164	2	1.25376	1.580355	1.90695	0.0228509	5.69191e-4	0.118056	0.0217398
chr8	47897969	47898069	3945108	0	-	0.44	(0.408,0.44]	chr8	361830	1	SS5_PROX	SS5_PROX:INTRON	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7	protein_coding	protein_coding	protein_coding	protein_coding	17	125	2	1.5285	1.5802399999999999	1.63198	0.0146221	0.0137074	0.106187	0.0949306
chr2	71386837	71386936	807580	0	+	0.373737	(0.35,0.378]	chr2	90214	56	INTRON	INTRON	ZNF638	ENSG00000075292.19	ENST00000410075.5:ENST00000409544.5:ENST00000264447.9:ENST00000491843.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	77	2	1.4414	1.580235	1.71907	0.0629423	0.0218101	0.196658	0.11491
chrX	41085444	41085539	7644061	0	+	0.715789	(0.57,1]	chrX	782227	1	UTR5	UTR5:EXON_MRNA	USP9X	ENSG00000124486.14	ENST00000324545.9:ENST00000378308.7	protein_coding	protein_coding	protein_coding	protein_coding	12	42	2	1.41857	1.5802100000000001	1.74185	0.0401765	0.0214217	0.143911	0.123836
chr8	23530300	23530398	3715110	0	+	0.540816	(0.515,0.57]	chr8	345213	7	INTRON	INTRON	SLC25A37	ENSG00000147454.14	ENST00000519973.6:ENST00000290075.10:ENST00000417331.6:ENST00000518881.5:ENST00000519192.1:ENST00000520654.1:ENST00000523930.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	54	2	1.3492	1.5800999999999998	1.811	0.0480671	0.0325989	0.171405	0.133687
chr5	54052992	54053091	2618335	0	-	0.323232	(0.32,0.35]	chr5	248837	48	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	110	2	1.29183	1.579995	1.86816	0.0438084	0.0138355	0.162255	0.0952812
chr5	95735110	95735208	2431280	0	+	0.530612	(0.515,0.57]	chr5	233640	25	INTRON	INTRON	RHOBTB3	ENSG00000164292.13	ENST00000510226.5:ENST00000504949.1:ENST00000506959.5:ENST00000379982.8:ENST00000512878.1:ENST00000510623.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	15	89	2	1.18101	1.579885	1.97876	0.0481633	0.00610685	0.153019	0.0706941
chrX	136869659	136869754	7897569	0	-	0.305263	(0.28,0.32]	chrX	804140	6	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	RBMX	ENSG00000147274.14	ENST00000561733.5:ENST00000431446.7:ENST00000496459.2:ENST00000568578.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	47	442	2	1.5007	1.5798649999999999	1.65903	0.00943242	0.00328743	0.0817766	0.0527031
chr11	65425668	65425768	4805799	0	+	0.34	(0.32,0.35]	chr11	446554	30	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NEAT1	ENSG00000245532.10	ENST00000499732.3:ENST00000687132.1:ENST00000501122.2:ENST00000685861.1:ENST00000601801.3:ENST00000670617.1:ENST00000646243.1:ENST00000645023.1:ENST00000693290.1:ENST00000616315.2	lncRNA	lncRNA	lncRNA	lncRNA	123	959	2	1.39879	1.5798	1.76081	0.00393384	0.00183608	0.0572563	0.0388282
chr1	204537991	204538063	297642	0	+	0.472222	(0.44,0.476]	chr1	34302	1	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MDM4	ENSG00000198625.14	ENST00000367183.7:ENST00000391947.6:ENST00000454264.6:ENST00000612738.4:ENST00000614459.4:ENST00000616250.4:ENST00000367182.8:ENST00000463049.5:ENST00000470908.5:ENST00000471783.1:ENST00000507825.3:ENST00000367179.7:ENST00000462012.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	15	104	2	1.42979	1.579615	1.72944	0.0196145	0.0188139	0.11792	0.109486
chr21	46271860	46271960	7471286	0	-	0.26	[0,0.28]	chr21	761667	9	INTRON	INTRON	MCM3AP	ENSG00000160294.11	ENST00000397708.1:ENST00000291688.6:ENST00000479557.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	18	196	2	1.43571	1.579495	1.72328	0.0316077	0.0108007	0.13151	0.0920575
chr22	21836134	21836234	7561071	0	-	0.47	(0.44,0.476]	chr22	773388	279	INTRON	INTRON	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	15	104	2	1.09971	1.579455	2.0592	0.0621447	0.00556585	0.194474	0.0648867
chr6	147206568	147206667	2988729	0	+	0.272727	[0,0.28]	chr6	280001	1	INTRON	INTRON	STXBP5	ENSG00000164506.15	ENST00000321680.11:ENST00000367481.7:ENST00000546097.5:ENST00000367480.7	protein_coding	protein_coding	protein_coding	protein_coding	11	120	2	1.56265	1.579315	1.59598	0.0401089	0.0287651	0.143774	0.139973
chr7	138540996	138541096	3435456	0	+	0.46	(0.44,0.476]	chr7	319997	18	INTRON	INTRON	TRIM24	ENSG00000122779.18	ENST00000343526.9:ENST00000415680.6:ENST00000497516.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	52	2	1.55662	1.57919	1.60176	0.0688347	0.0389597	0.184298	0.160861
chr11	59640781	59640881	4954656	0	-	0.47	(0.44,0.476]	chr11	465257	10	INTRON	INTRON	PATL1	ENSG00000166889.14	ENST00000300146.10	protein_coding	protein_coding	protein_coding	protein_coding	7	52	2	1.49356	1.5790899999999999	1.66462	0.0537505	0.0520247	0.180803	0.159508
chr16	11738810	11738909	6445162	0	-	0.464646	(0.44,0.476]	chr16	620837	22	INTRON	INTRON	TXNDC11	ENSG00000153066.13	ENST00000283033.10:ENST00000356957.7:ENST00000576969.5:ENST00000573174.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	52	2	1.49356	1.5790899999999999	1.66462	0.0537505	0.0520247	0.180803	0.159508
chr8	55780264	55780363	3753858	0	+	0.454545	(0.44,0.476]	chr8	349174	62	INTRON	INTRON	TGS1	ENSG00000137574.11	ENST00000260129.6:ENST00000523948.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	52	2	1.49356	1.5790899999999999	1.66462	0.0537505	0.0520247	0.180803	0.159508
chr19	2205441	2205539	6996595	0	+	0.469388	(0.44,0.476]	chr19	693473	23	INTRON	INTRON	DOT1L	ENSG00000104885.19	ENST00000398665.8:ENST00000686010.1	protein_coding	protein_coding	protein_coding	protein_coding	15	108	2	1.27731	1.5789149999999998	1.88052	0.0381726	0.00808369	0.158112	0.0766625
chr11	117168092	117168191	4869335	0	+	0.232323	[0,0.28]	chr11	454464	5	UTR3	UTR3:EXON_MRNA:INTRON	PAFAH1B2	ENSG00000168092.14	ENST00000419197.6:ENST00000527958.6:ENST00000529887.6:ENST00000526888.1:ENST00000530272.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	77	2	1.49274	1.5787900000000001	1.66484	0.0617844	0.0592697	0.189982	0.174281
chr7	23456980	23457080	3503532	0	-	0.45	(0.44,0.476]	chr7	326910	258	INTRON	INTRON	IGF2BP3	ENSG00000136231.14	ENST00000258729.8:ENST00000421467.6:ENST00000468263.5:ENST00000491719.5:ENST00000476938.5:ENST00000468005.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	81	2	1.4592	1.5787149999999999	1.69823	0.0342963	0.0218548	0.147255	0.11491
chr10	923982	924082	4542510	0	-	0.48	(0.476,0.515]	chr10	419305	2	SS5_PROX	SS5_PROX:INTRON	LARP4B	ENSG00000107929.16	ENST00000316157.8:ENST00000690516.1:ENST00000476529.5:ENST00000406525.6:ENST00000481118.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	13	97	2	1.27247	1.57856	1.88465	0.0520408	0.00780969	0.176908	0.0759016
chr12	68646997	68647096	5161569	0	+	0.313131	(0.28,0.32]	chr12	488591	55	INTRON	INTRON	RAP1B	ENSG00000127314.18	ENST00000460800.5:ENST00000393436.9:ENST00000250559.14:ENST00000425247.6:ENST00000501412.2:ENST00000450214.6:ENST00000463493.5:ENST00000537460.5:ENST00000341355.9:ENST00000538283.5:ENST00000541167.5:ENST00000422358.6:ENST00000489473.6:ENST00000545270.5:ENST00000538980.5:ENST00000543393.5:ENST00000542018.5:ENST00000540209.5:ENST00000378985.7:ENST00000453560.6:ENST00000534899.5:ENST00000542145.5:ENST00000539091.5:ENST00000535492.5:ENST00000540781.5:ENST00000485252.6:ENST00000538877.5:ENST00000541386.5:ENST00000543697.5:ENST00000545720.6:ENST00000541216.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	67	2	1.47299	1.57854	1.68409	0.0597769	0.0548665	0.189982	0.165463
chr18	810714	810814	6940691	0	-	0.29	(0.28,0.32]	chr18	686527	127	INTRON	INTRON	YES1	ENSG00000176105.14	ENST00000584307.5:ENST00000314574.5:ENST00000577611.1:ENST00000581960.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	67	2	1.47299	1.57854	1.68409	0.0597769	0.0548665	0.189982	0.165463
chr20	32808582	32808679	7257157	0	+	0.587629	(0.57,1]	chr20	737245	8	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	DNMT3B	ENSG00000088305.19	ENST00000696232.1:ENST00000328111.6:ENST00000696231.1:ENST00000348286.6:ENST00000353855.6:ENST00000696233.1:ENST00000201963.3:ENST00000696238.1:ENST00000696245.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	33	2	1.26343	1.57847	1.89351	0.0641008	0.0255126	0.178019	0.133676
chr16	10445248	10445348	6286877	0	+	0.39	(0.378,0.408]	chr16	602005	44	INTRON	INTRON	ATF7IP2	ENSG00000166669.14	ENST00000396559.5:ENST00000396560.6:ENST00000543967.5:ENST00000562102.6:ENST00000535850.5:ENST00000568027.5:ENST00000324570.9:ENST00000356427.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	71	2	1.2488	1.57846	1.90812	0.0562531	0.0264295	0.184145	0.122506
chr22	20842719	20842819	7559523	0	-	0.54	(0.515,0.57]	chr22	773216	36	INTRON	INTRON	PI4KA	ENSG00000241973.11	ENST00000255882.11:ENST00000485963.5:ENST00000449120.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	63	2	1.47127	1.578395	1.68552	0.0333563	0.0292028	0.141637	0.134145
chr6	7120679	7120779	2798492	0	+	0.55	(0.515,0.57]	chr6	263723	116	INTRON	INTRON	RREB1	ENSG00000124782.21	ENST00000379933.7:ENST00000491191.5:ENST00000471433.5:ENST00000379938.7:ENST00000467782.5:ENST00000349384.10:ENST00000334984.10:ENST00000475946.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	14	86	2	1.24949	1.578345	1.9072	0.0486249	0.00558759	0.153975	0.0678837
chr19	28440805	28440904	7165495	0	-	0.515152	(0.476,0.515]	chr19	724159	27	INTRON	INTRON	ENSG00000283403:ENSG00000267243	ENSG00000283403.1:ENSG00000267243.6	ENST00000592347.5:ENST00000593065.5:ENST00000592716.1	lncRNA	lncRNA	lncRNA	lncRNA	9	67	2	1.47534	1.57813	1.68092	0.0474026	0.0350582	0.169265	0.137535
chr15	64520553	64520653	6044689	0	+	0.26	[0,0.28]	chr15	575696	176	INTRON	INTRON	ZNF609	ENSG00000180357.10	ENST00000326648.5:ENST00000558680.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	94	2	1.45721	1.57808	1.69895	0.0568939	0.0401939	0.167723	0.161534
chr6	37173512	37173592	2855288	0	+	0.45	(0.44,0.476]	chr6	269935	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PIM1	ENSG00000137193.14	ENST00000373509.6:ENST00000468243.5:ENST00000479509.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	14	95	2	1.54426	1.577945	1.61163	0.0598319	0.0101087	0.169278	0.0886557
chr5	139510805	139510900	2500145	0	+	0.431579	(0.408,0.44]	chr5	239014	11	EXON_LNCRNA	EXON_LNCRNA	ENSG00000286403	ENSG00000286403.1	ENST00000657350.1	lncRNA	lncRNA	lncRNA	lncRNA	14	105	2	1.46762	1.57788	1.68814	0.0267854	0.0135006	0.134871	0.0949306
chr6	10903854	10903952	2811918	0	+	0.377551	(0.35,0.378]	chr6	264578	5	INTRON	INTRON	SYCP2L	ENSG00000153157.13	ENST00000341041.8:ENST00000283141.11:ENST00000543878.5:ENST00000487561.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	67	2	1.4414	1.577755	1.71411	0.0629423	0.0310697	0.196658	0.13151
chr6	132815960	132816060	2961722	0	+	0.51	(0.476,0.515]	chr6	278487	1	SS3_PROX	SS3_PROX:INTRON	RPS12	ENSG00000112306.8	ENST00000230050.4:ENST00000484616.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	24	197	2	1.23296	1.577705	1.92245	0.0446281	0.0012794	0.163255	0.0326531
chr6	20425224	20425324	2827681	0	+	0.45	(0.44,0.476]	chr6	265575	210	INTRON	INTRON	E2F3	ENSG00000112242.16	ENST00000346618.8:ENST00000535432.2	protein_coding	protein_coding	protein_coding	protein_coding	11	82	2	1.33609	1.57765	1.81921	0.0510862	0.0142184	0.176696	0.0960818
chr7	101851752	101851852	3366706	0	+	0.33	(0.32,0.35]	chr7	315215	324	INTRON	INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000497815.5:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000607092.1:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000558469.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	9	78	2	1.53859	1.5772499999999998	1.61591	0.0534261	0.0277247	0.162935	0.137011
chr2	61524474	61524572	1131085	0	-	0.438776	(0.408,0.44]	chr2	121618	9	INTRON	INTRON	XPO1	ENSG00000082898.19	ENST00000676553.1:ENST00000677556.1:ENST00000677814.1:ENST00000676771.1:ENST00000677803.1:ENST00000677239.1:ENST00000678790.1:ENST00000677928.1:ENST00000678182.1:ENST00000677150.1:ENST00000678172.1:ENST00000678360.1:ENST00000678081.1:ENST00000676889.1:ENST00000676783.1:ENST00000679035.1:ENST00000677422.1:ENST00000677417.1:ENST00000677813.1:ENST00000676999.1:ENST00000676667.1:ENST00000678263.1:ENST00000678877.1:ENST00000677933.1:ENST00000680228.1:ENST00000677289.1:ENST00000401558.7:ENST00000428210.5:ENST00000677290.1:ENST00000677850.1:ENST00000451765.6:ENST00000676789.1:ENST00000678741.1:ENST00000404992.6:ENST00000406957.5:ENST00000443240.5:ENST00000476585.5:ENST00000468259.1:ENST00000420673.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	13	89	2	1.30898	1.57707	1.84516	0.0340981	0.0193431	0.146815	0.108861
chr6	35874639	35874739	3088352	0	-	0.4	(0.378,0.408]	chr6	288859	3	SS3_PROX	SS3_PROX:INTRON	SRPK1	ENSG00000096063.16	ENST00000373825.7:ENST00000423325.6:ENST00000346162.10:ENST00000361690.7:ENST00000510290.5:ENST00000373821.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	63	2	1.51223	1.5769600000000001	1.64169	0.051139	0.0377255	0.176696	0.14078
chrY	11206753	11206853	7930080	0	-	0.23	[0,0.28]	chrY	807176	433	INTRON	INTRON	ENSG00000278212	ENSG00000278212.3	ENST00000652671.1:ENST00000651211.2:ENST00000687423.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	8	88	2	1.35418	1.5768550000000001	1.79953	0.0757936	0.0377477	0.194427	0.156608
chr1	173488243	173488339	255628	0	+	0.40625	(0.378,0.408]	chr1	30516	5	UTR3	UTR3:EXON_MRNA	PRDX6	ENSG00000117592.9	ENST00000340385.6	protein_coding	protein_coding	protein_coding	protein_coding	10	76	2	1.29896	1.576755	1.85455	0.0575113	0.0192049	0.187655	0.108861
chr4	66141	66241	1905418	0	+	0.27	[0,0.28]	chr4	191003	56	INTRON	INTRON	ZNF595	ENSG00000272602.6	ENST00000608255.2:ENST00000609518.5:ENST00000509152.3:ENST00000610261.6	protein_coding	protein_coding	protein_coding	protein_coding	12	130	2	1.31372	1.5766550000000001	1.83959	0.0619737	0.0146743	0.17456	0.106556
chr16	10464120	10464219	6287069	0	+	0.363636	(0.35,0.378]	chr16	602017	62	INTRON	INTRON	ATF7IP2	ENSG00000166669.14	ENST00000396559.5:ENST00000396560.6:ENST00000543967.5:ENST00000562102.6:ENST00000535850.5:ENST00000568027.5:ENST00000324570.9:ENST00000356427.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	13	104	2	1.28104	1.576495	1.87195	0.0568483	0.00738821	0.167723	0.0769106
chr16	31182860	31182958	6340581	0	+	0.530612	(0.515,0.57]	chr16	608323	3	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	FUS	ENSG00000089280.19	ENST00000566605.5:ENST00000254108.12:ENST00000380244.7:ENST00000487045.6:ENST00000487509.6:ENST00000568685.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	17	107	2	1.47892	1.576445	1.67397	0.0202204	0.008093	0.121353	0.0766625
chr1	86919197	86919297	153638	0	+	0.45	(0.44,0.476]	chr1	16952	30	INTRON	INTRON	HS2ST1	ENSG00000153936.18	ENST00000370550.10:ENST00000370551.8:ENST00000687893.1:ENST00000693745.1:ENST00000689904.1:ENST00000690674.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	51	2	1.30125	1.576355	1.85146	0.0734119	0.0545846	0.190171	0.182529
chr11	66654768	66654868	4811198	0	+	0.48	(0.476,0.515]	chr11	447918	25	INTRON	INTRON	RBM4	ENSG00000173933.21	ENST00000396053.9	protein_coding	protein_coding	protein_coding	protein_coding	8	59	2	1.4095	1.576335	1.74317	0.054012	0.0396373	0.16443	0.161534
chr16	23684985	23685084	6323693	0	+	0.393939	(0.378,0.408]	chr16	605659	5	INTRON	INTRON	PLK1	ENSG00000166851.15	ENST00000562272.5:ENST00000300093.9:ENST00000562407.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	71	2	1.28658	1.5762800000000001	1.86598	0.0499541	0.0300232	0.17488	0.129138
chr6	26138342	26138439	2837136	0	+	0.381443	(0.378,0.408]	chr6	266013	4	UTR3	UTR3:EXON_MRNA	H2AC6	ENSG00000180573.10	ENST00000314088.6:ENST00000602637.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	37	269	2	1.51744	1.576245	1.63505	0.00656798	0.00440516	0.0701901	0.0608941
chr1	220112724	220112823	318971	0	+	0.474747	(0.44,0.476]	chr1	36525	14	INTRON	INTRON	IARS2	ENSG00000067704.10	ENST00000366922.3	protein_coding	protein_coding	protein_coding	protein_coding	7	52	2	1.49942	1.576195	1.65297	0.0792118	0.0331814	0.199574	0.145918
chr22	16625587	16625686	7473602	0	+	0.464646	(0.44,0.476]	chr22	762000	23	INTRON	INTRON	TPTEP1	ENSG00000100181.22	ENST00000558085.6:ENST00000400593.6:ENST00000426585.5:ENST00000383140.7	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	7	52	2	1.43625	1.575995	1.71574	0.063142	0.045256	0.197183	0.149888
chr6	31748030	31748129	2843569	0	+	0.353535	(0.35,0.378]	chr6	267803	2	INTRON	INTRON	MSH5:MSH5-SAPCD1	ENSG00000204410.16:ENSG00000255152.8	ENST00000375755.8:ENST00000375750.9:ENST00000650702.1:ENST00000493662.6:ENST00000375703.7:ENST00000375740.7:ENST00000423982.6:ENST00000463144.5:ENST00000450148.5:ENST00000497269.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	50	2	1.56287	1.575745	1.58862	0.0697648	0.0615516	0.193423	0.184298
chr6	87157848	87157947	2913279	0	+	0.474747	(0.44,0.476]	chr6	275276	17	INTRON	INTRON	ZNF292	ENSG00000188994.13	ENST00000392985.3:ENST00000369577.8:ENST00000369578.6:ENST00000518845.1:ENST00000339907.8:ENST00000496806.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	78	2	1.4659	1.575675	1.68545	0.0322071	0.0269628	0.135436	0.132543
chr6	17658871	17658970	3065722	0	-	0.494949	(0.476,0.515]	chr6	284824	66	INTRON	INTRON	NUP153	ENSG00000124789.12	ENST00000613258.4:ENST00000537253.5:ENST00000262077.3	protein_coding	protein_coding	protein_coding	protein_coding	23	138	2	0.992629	1.5756195	2.15861	0.0549893	0.00357273	0.183698	0.0532819
chr18	2788774	2788873	6866258	0	+	0.525253	(0.515,0.57]	chr18	680200	34	INTRON	INTRON	SMCHD1	ENSG00000101596.17	ENST00000320876.11:ENST00000688342.1:ENST00000577880.5:ENST00000584897.5:ENST00000686763.1:ENST00000686864.1:ENST00000688708.1:ENST00000645355.1:ENST00000688964.1:ENST00000685656.1:ENST00000689034.1:ENST00000642953.1:ENST00000689800.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	57	2	1.32981	1.575615	1.82142	0.0640038	0.0191173	0.199279	0.108861
chr16	21513130	21513230	6461488	0	-	0.63	(0.57,1]	chr16	623383	66	INTRON	INTRON	SMG1P3	ENSG00000180747.15	ENST00000522841.6:ENST00000437413.2:ENST00000435197.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	14	50	2	1.25829	1.5755599999999998	1.89283	0.0399524	0.00863312	0.161534	0.078644
chr16	89797113	89797212	6544617	0	-	0.444444	(0.44,0.476]	chr16	634567	7	INTRON	INTRON	FANCA	ENSG00000187741.16	ENST00000561667.2:ENST00000389301.8:ENST00000568369.6:ENST00000564475.6:ENST00000696275.1:ENST00000696287.1:ENST00000696286.1:ENST00000696274.1:ENST00000696291.1:ENST00000696276.1:ENST00000567205.2:ENST00000567284.7:ENST00000696277.1:ENST00000696292.1:ENST00000563767.2:ENST00000567621.6:ENST00000566409.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	78	2	1.24733	1.5755400000000002	1.90375	0.0561984	0.0156406	0.18407	0.101393
chr2	65124195	65124294	1142903	0	-	0.565657	(0.515,0.57]	chr2	122186	190	INTRON	INTRON	RAB1A	ENSG00000138069.18	ENST00000649427.1:ENST00000494188.1:ENST00000409784.8:ENST00000409892.5:ENST00000409751.1:ENST00000398529.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	47	2	1.44339	1.5753949999999999	1.7074	0.0779432	0.0352285	0.196685	0.150284
chr1	213165658	213165758	311851	0	+	0.55	(0.515,0.57]	chr1	35945	354	INTRON	INTRON	RPS6KC1	ENSG00000136643.12	ENST00000615329.4:ENST00000543354.5:ENST00000614059.4:ENST00000543470.5:ENST00000366960.8:ENST00000366959.4:ENST00000490299.5:ENST00000468069.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	54	2	1.39706	1.57539	1.75372	0.041152	0.0386904	0.161534	0.14279
chr1	42702076	42702172	84147	0	+	0.322917	(0.32,0.35]	chr1	11051	2	UTR3	UTR3:EXON_MRNA	YBX1	ENSG00000065978.19	ENST00000321358.12:ENST00000436427.1	protein_coding	protein_coding	protein_coding	protein_coding	33	259	2	1.02046	1.57521	2.12996	0.0452312	0.00138569	0.163881	0.0339276
chr6	99420122	99420222	3166096	0	-	0.53	(0.515,0.57]	chr6	295334	33	INTRON	INTRON	PNISR	ENSG00000132424.17	ENST00000681615.1:ENST00000369239.10:ENST00000647811.1:ENST00000481229.2:ENST00000679525.1:ENST00000681611.1:ENST00000438806.5:ENST00000478777.5:ENST00000492294.5:ENST00000498075.1:ENST00000466057.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	42	2	1.44237	1.574885	1.7074	0.0779432	0.0456196	0.196685	0.164236
chr19	12700464	12700562	7141144	0	-	0.602041	(0.57,1]	chr19	720637	14	UTR3	UTR3:EXON_MRNA	TNPO2	ENSG00000105576.16	ENST00000425528.6:ENST00000356861.9:ENST00000450764.6	protein_coding	protein_coding	protein_coding	protein_coding	7	27	2	1.46969	1.5747749999999998	1.67986	0.0586892	0.0496395	0.174685	0.167915
chr9	33997036	33997133	4245324	0	-	0.309278	(0.28,0.32]	chr9	390468	1	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	UBAP2	ENSG00000137073.24	ENST00000379238.7:ENST00000683659.1:ENST00000682239.1:ENST00000683140.1:ENST00000682209.1:ENST00000681980.1:ENST00000360802.6:ENST00000683252.1:ENST00000684158.1:ENST00000682914.1:ENST00000683717.1:ENST00000379239.9:ENST00000683084.1:ENST00000684754.1:ENST00000629575.2:ENST00000684298.1:ENST00000412543.6:ENST00000480885.5:ENST00000459988.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	21	185	2	1.29553	1.574725	1.85392	0.025216	0.00948796	0.133676	0.0817766
chr7	151213558	151213657	3674215	0	-	0.464646	(0.44,0.476]	chr7	341087	22	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	ABCF2-H2BE1:ABCF2	ENSG00000285292.1:ENSG00000033050.9	ENST00000222388.6:ENST00000287844.7	protein_coding	protein_coding	protein_coding	protein_coding	11	83	2	1.4962	1.5746799999999999	1.65316	0.0392301	0.0192752	0.161534	0.108861
chr9	112220485	112220584	4316813	0	-	0.373737	(0.35,0.378]	chr9	397001	29	UTR3	UTR3:EXON_MRNA	PTBP3	ENSG00000119314.16	ENST00000334318.10:ENST00000458258.5:ENST00000374257.6	protein_coding	protein_coding	protein_coding	protein_coding	17	130	2	1.47372	1.574325	1.67493	0.0192907	0.014478	0.108861	0.10521
chr1	244847200	244847299	672915	0	-	0.292929	(0.28,0.32]	chr1	79597	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	HNRNPU	ENSG00000153187.20	ENST00000475997.6:ENST00000366527.4:ENST00000649899.1:ENST00000638230.1:ENST00000640657.1:ENST00000640306.1:ENST00000489705.2:ENST00000640264.1	protein_coding	retained_intron	protein_coding	retained_intron:nonsense_mediated_decay:processed_transcript	13	114	2	1.36121	1.57427	1.78733	0.0316377	0.0276087	0.144449	0.123904
chr4	98880443	98880540	2208021	0	-	0.268041	[0,0.28]	chr4	216131	13	UTR3	UTR3:EXON_MRNA	EIF4E	ENSG00000151247.13	ENST00000450253.7	protein_coding	protein_coding	protein_coding	protein_coding	9	98	2	1.49535	1.5742699999999998	1.65319	0.0670881	0.0275612	0.183051	0.137011
chr10	28548151	28548251	4413955	0	+	0.53	(0.515,0.57]	chr10	407148	97	INTRON	INTRON	WAC	ENSG00000095787.24	ENST00000680735.1:ENST00000375664.8:ENST00000428935.6:ENST00000651598.1:ENST00000628285.3:ENST00000681112.1:ENST00000679570.1:ENST00000375646.5:ENST00000354911.9:ENST00000347934.8:ENST00000420266.6:ENST00000651885.1:ENST00000651441.1:ENST00000679398.1:ENST00000424454.5:ENST00000442148.6:ENST00000448193.5:ENST00000414108.6:ENST00000679428.1:ENST00000439676.5:ENST00000345541.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	37	2	1.44089	1.5741450000000001	1.7074	0.0779432	0.0617046	0.196685	0.193423
chr21	37389497	37389597	7406449	0	+	0.36	(0.35,0.378]	chr21	754850	140	INTRON	INTRON	DYRK1A	ENSG00000157540.22	ENST00000646523.1:ENST00000647425.1:ENST00000647188.2:ENST00000647504.1:ENST00000644942.1:ENST00000338785.8:ENST00000643624.1:ENST00000643551.1:ENST00000426672.6:ENST00000398960.7	protein_coding	protein_coding	protein_coding	protein_coding	13	104	2	1.36085	1.57412	1.78739	0.0446772	0.0104819	0.149888	0.0905779
chr10	45990343	45990443	4430565	0	+	0.47	(0.44,0.476]	chr10	408492	11	INTRON	INTRON	TIMM23	ENSG00000265354.4	ENST00000580018.4	protein_coding	protein_coding	protein_coding	protein_coding	10	75	2	1.44993	1.57408	1.69823	0.045367	0.0218548	0.164236	0.11491
chr7	105329564	105329664	3603312	0	-	0.42	(0.408,0.44]	chr7	336161	226	INTRON	INTRON	SRPK2	ENSG00000135250.17	ENST00000393651.8:ENST00000482897.5:ENST00000460391.5:ENST00000462282.5:ENST00000465112.5:ENST00000482862.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	10	73	2	1.3378	1.573985	1.81017	0.050805	0.0217525	0.175989	0.11491
chr1	145992622	145992717	541069	0	-	0.536842	(0.515,0.57]	chr1	63465	3	UTR3	UTR3:EXON_MRNA	TXNIP	ENSG00000265972.6	ENST00000582401.6	protein_coding	protein_coding	protein_coding	protein_coding	39	222	2	1.45774	1.573865	1.68999	0.00537587	0.0039562	0.0642754	0.057511
chr7	111331782	111331882	3621800	0	-	0.35	(0.32,0.35]	chr7	337093	3679	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	78	2	1.30365	1.57365	1.84365	0.0773448	0.0184323	0.196285	0.116493
chr10	30338026	30338126	4587530	0	-	0.49	(0.476,0.515]	chr10	422975	6	INTRON	INTRON	MTPAP	ENSG00000107951.15	ENST00000263063.9:ENST00000488290.5:ENST00000417581.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	94	2	1.35372	1.5735649999999999	1.79341	0.0428959	0.009837	0.148082	0.0877296
chr1	65066276	65066359	475553	0	-	0.493976	(0.476,0.515]	chr1	57250	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	JAK1	ENSG00000162434.13	ENST00000672434.1:ENST00000671954.1:ENST00000673502.1:ENST00000672751.1:ENST00000672099.1	protein_coding	protein_coding	protein_coding	protein_coding	9	67	2	1.55865	1.5735350000000001	1.58842	0.0406588	0.034348	0.161534	0.135807
chr6	154798900	154798999	3002477	0	+	0.393939	(0.378,0.408]	chr6	280767	34	INTRON	INTRON	SCAF8	ENSG00000213079.10	ENST00000367186.7:ENST00000417268.3:ENST00000367178.8	protein_coding	protein_coding	protein_coding	protein_coding	7	54	2	1.53052	1.5735100000000002	1.6165	0.0744544	0.0374185	0.192012	0.155878
chrX	48523938	48524005	7658436	0	+	0.597015	(0.57,1]	chrX	783767	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	EBP	ENSG00000147155.11	ENST00000276096.10:ENST00000498425.1:ENST00000495186.6:ENST00000446158.5:ENST00000414061.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	30	2	1.50772	1.573455	1.63919	0.05421	0.0388955	0.164887	0.16071
chr10	17442868	17442968	4568901	0	-	0.39	(0.378,0.408]	chr10	421387	519	INTRON	INTRON	ST8SIA6	ENSG00000148488.17	ENST00000377602.5:ENST00000648997.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	54	2	1.51223	1.573405	1.63458	0.0573057	0.051139	0.176696	0.167723
chr16	16505217	16505317	6310914	0	+	0.53	(0.515,0.57]	chr16	604098	52	INTRON	INTRON	ENSG00000260126	ENSG00000260126.2	ENST00000567465.2	lncRNA	lncRNA	lncRNA	lncRNA	13	83	2	1.54678	1.5732	1.59962	0.0324987	0.0134611	0.145164	0.0947688
chr6	122432619	122432719	2947662	0	+	0.27	[0,0.28]	chr6	277511	5	UTR3	UTR3:EXON_MRNA	HSF2	ENSG00000025156.13	ENST00000452194.5:ENST00000368455.9	protein_coding	protein_coding	protein_coding	protein_coding	8	88	2	1.43498	1.572935	1.71089	0.0775714	0.0318277	0.196285	0.14477
chr19	2233444	2233542	7115718	0	-	0.642857	(0.57,1]	chr19	715285	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PLEKHJ1	ENSG00000104886.12	ENST00000587394.6:ENST00000587962.6:ENST00000326631.7:ENST00000591099.6:ENST00000589097.6:ENST00000588450.1:ENST00000589791.5:ENST00000588633.1:ENST00000588545.2:ENST00000586608.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	9	34	2	1.2666	1.572805	1.87901	0.0788045	0.0152867	0.198736	0.108569
chr1	246188914	246189013	677522	0	-	0.424242	(0.408,0.44]	chr1	79727	16	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000391836.3:ENST00000453676.5:ENST00000462422.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	53	2	1.44993	1.572795	1.69566	0.0638951	0.0453922	0.177824	0.164236
chr7	119697256	119697356	3628309	0	-	0.43	(0.408,0.44]	chr7	337315	1968	INTRON	INTRON	LINC02476	ENSG00000225546.6	ENST00000660268.1	lncRNA	lncRNA	lncRNA	lncRNA	26	188	2	1.38975	1.57257	1.75539	0.0176905	0.00319803	0.105304	0.0521027
chr10	73065653	73065753	4647529	0	-	0.4	(0.378,0.408]	chr10	427530	117	INTRON	INTRON	P4HA1	ENSG00000122884.13	ENST00000394890.7:ENST00000307116.6:ENST00000373008.6:ENST00000440381.5:ENST00000263556.3	protein_coding	protein_coding	protein_coding	protein_coding	11	84	2	1.37524	1.572535	1.76983	0.0610755	0.0109303	0.172411	0.0924702
chr15	22575292	22575372	5975354	0	+	0.5	(0.476,0.515]	chr15	568219	2	INTRON	INTRON	HERC2P2	ENSG00000276550.5	ENST00000613386.4:ENST00000619021.4:ENST00000618651.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	20	137	2	1.25366	1.5724749999999998	1.89129	0.0276485	0.00569336	0.137011	0.065612
chr7	23447788	23447888	3503440	0	-	0.42	(0.408,0.44]	chr7	326910	166	INTRON	INTRON	IGF2BP3	ENSG00000136231.14	ENST00000258729.8:ENST00000421467.6:ENST00000468263.5:ENST00000491719.5:ENST00000476938.5:ENST00000468005.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	58	2	1.40381	1.572445	1.74108	0.0521927	0.0424099	0.177259	0.148082
chr2	86135294	86135390	822688	0	+	0.395833	(0.378,0.408]	chr2	91839	2	SS5_PROX	SS5_PROX:INTRON	PTCD3	ENSG00000132300.19	ENST00000254630.12:ENST00000487043.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	60	2	1.41307	1.572355	1.73164	0.0510067	0.0441773	0.176593	0.149888
chr2	147961361	147961461	1242177	0	-	0.46	(0.44,0.476]	chr2	131858	21	INTRON	INTRON	ORC4	ENSG00000115947.14	ENST00000392857.10:ENST00000264169.6:ENST00000536575.5:ENST00000535373.5:ENST00000540442.5:ENST00000461711.5:ENST00000496670.6:ENST00000490200.5:ENST00000416719.5:ENST00000457954.5:ENST00000440042.1:ENST00000495601.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	10	72	2	1.4592	1.572325	1.68545	0.0342963	0.0322071	0.147255	0.132543
chr1	244854251	244854350	672988	0	-	0.323232	(0.32,0.35]	chr1	79601	41	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	HNRNPU	ENSG00000153187.20	ENST00000475997.6:ENST00000366527.4:ENST00000649899.1:ENST00000638230.1:ENST00000640306.1:ENST00000489705.2:ENST00000640264.1:ENST00000444376.7:ENST00000640218.2:ENST00000639628.2:ENST00000440865.2:ENST00000638952.1:ENST00000638716.1:ENST00000366525.8:ENST00000639880.1:ENST00000283179.14:ENST00000638475.1:ENST00000639824.1:ENST00000468690.2:ENST00000476241.2:ENST00000640001.1:ENST00000640056.1:ENST00000639064.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	80	678	2	1.45524	1.5722	1.68916	0.00695771	0.00138225	0.0718189	0.0341261
chr9	123185997	123186097	4339651	0	-	0.5	(0.476,0.515]	chr9	398947	13	INTRON	INTRON	STRBP	ENSG00000165209.19	ENST00000348403.10:ENST00000360998.3:ENST00000407982.6:ENST00000479114.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	59	2	1.4553	1.5721850000000002	1.68907	0.0623645	0.0296007	0.175357	0.142135
chr6	34238011	34238108	2848116	0	+	0.525773	(0.515,0.57]	chr6	269045	3	INTRON	INTRON	HMGA1	ENSG00000137309.20	ENST00000347617.10:ENST00000401473.7:ENST00000311487.9:ENST00000447654.5:ENST00000674029.1:ENST00000478214.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	24	154	2	1.10604	1.5719349999999999	2.03783	0.045747	8.93482e-4	0.164677	0.0275812
chr21	14759545	14759644	7430186	0	-	0.373737	(0.35,0.378]	chr21	757888	51	INTRON	INTRON	ENSG00000232884	ENSG00000232884.10	ENST00000673788.1:ENST00000674136.1	lncRNA	lncRNA	lncRNA	lncRNA	10	78	2	1.5118	1.571855	1.63191	0.0789277	0.0149226	0.198963	0.107378
chr16	21444789	21444889	6460763	0	-	0.4	(0.378,0.408]	chr16	623226	42	INTRON	INTRON	NPIPB3	ENSG00000169246.16	ENST00000545358.5:ENST00000543368.1:ENST00000544154.1	protein_coding	retained_intron	protein_coding	retained_intron:processed_transcript	18	138	2	1.29019	1.571815	1.85344	0.0325614	0.00577772	0.145164	0.0662147
chr16	23853658	23853757	6323935	0	+	0.323232	(0.32,0.35]	chr16	605693	159	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000498058.1:ENST00000645517.1:ENST00000498739.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	85	2	1.40199	1.5716700000000001	1.74135	0.0432025	0.0298264	0.162255	0.129138
chr1	179867624	179867722	593366	0	-	0.428571	(0.408,0.44]	chr1	71113	2	EXON_LNCRNA	EXON_LNCRNA:INTRON	TOR1AIP2	ENSG00000169905.13	ENST00000367612.7:ENST00000609928.6:ENST00000482587.5:ENST00000495650.1:ENST00000474318.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	58	2	1.35436	1.571585	1.78881	0.0603719	0.0370259	0.19151	0.139194
chr10	70718637	70718736	4447787	0	+	0.515152	(0.476,0.515]	chr10	410378	95	INTRON	INTRON	ADAMTS14	ENSG00000138316.11	ENST00000373207.2:ENST00000373208.5	protein_coding	protein_coding	protein_coding	protein_coding	13	92	2	1.26748	1.57146	1.87544	0.0453667	0.0113658	0.164236	0.0886611
chr16	21503600	21503697	6461392	0	-	0.474227	(0.44,0.476]	chr16	623379	9	INTRON	INTRON	SMG1P3	ENSG00000180747.15	ENST00000522841.6:ENST00000437413.2:ENST00000435197.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	25	178	2	1.54191	1.57146	1.60101	0.0124368	0.005395	0.0920472	0.066545000000000007
chrX	71575392	71575492	7680396	0	+	0.33	(0.32,0.35]	chrX	786485	17	UTR3	UTR3:EXON_MRNA	OGT	ENSG00000147162.14	ENST00000373719.8	protein_coding	protein_coding	protein_coding	protein_coding	59	464	2	1.25011	1.5713300000000001	1.89255	0.0122008	0.00172617	0.0967777	0.0374701
chr1	29164097	29164196	410262	0	-	0.454545	(0.44,0.476]	chr1	49403	32	INTRON	INTRON	SRSF4	ENSG00000116350.18	ENST00000373795.7:ENST00000691479.1:ENST00000634348.1:ENST00000466448.4:ENST00000605204.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	23	164	2	1.50133	1.5712000000000002	1.64107	0.0165581	0.00496603	0.102621	0.0646039
chr1	52883649	52883748	105325	0	+	0.494949	(0.476,0.515]	chr1	13774	16	INTRON	INTRON	ZYG11A	ENSG00000203995.10	ENST00000371532.5:ENST00000612017.4:ENST00000371528.2	protein_coding	protein_coding	protein_coding	protein_coding	6	45	2	1.52615	1.571005	1.61586	0.0739267	0.0567093	0.190914	0.185107
chr22	23194970	23195069	7483348	0	+	0.515152	(0.476,0.515]	chr22	763531	124	INTRON	INTRON	BCR	ENSG00000186716.21	ENST00000479188.5:ENST00000359540.7:ENST00000305877.13	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	45	2	1.52615	1.571005	1.61586	0.0739267	0.0567093	0.190914	0.185107
chr17	31957564	31957663	6595883	0	+	0.464646	(0.44,0.476]	chr17	641554	95	INTRON	INTRON	SUZ12	ENSG00000178691.11	ENST00000322652.10:ENST00000580398.1	protein_coding	protein_coding	protein_coding	protein_coding	10	74	2	1.54104	1.570685	1.60033	0.0339289	0.030306	0.146815	0.130104
chr20	38087536	38087635	7269425	0	+	0.40404	(0.378,0.408]	chr20	738725	15	INTRON	INTRON	RPRD1B	ENSG00000101413.12	ENST00000462548.6:ENST00000373433.9:ENST00000449186.2:ENST00000618318.1:ENST00000614670.1:ENST00000471511.1:ENST00000484683.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	54	2	1.45712	1.570525	1.68393	0.0597975	0.0503034	0.189982	0.156383
chr7	130049842	130049942	3638315	0	-	0.38	(0.378,0.408]	chr7	338327	3	INTRON	INTRON	ZC3HC1	ENSG00000091732.17	ENST00000311873.9:ENST00000358303.9:ENST00000360708.9:ENST00000467642.5:ENST00000648450.1:ENST00000481503.5:ENST00000471022.5:ENST00000483827.1:ENST00000480193.5:ENST00000470651.1:ENST00000484432.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	54	2	1.45712	1.570525	1.68393	0.0597975	0.0503034	0.189982	0.156383
chr1	1731728	1731827	361292	0	-	0.484848	(0.476,0.515]	chr1	42112	60	INTRON	INTRON	ENSG00000268575:SLC35E2A	ENSG00000268575.1:ENSG00000215790.8	ENST00000598846.1:ENST00000647043.1	lncRNA	lncRNA	lncRNA:transcribed_unprocessed_pseudogene	lncRNA:processed_transcript	14	100	2	1.51533	1.5701900000000002	1.62505	0.0210589	0.0184991	0.116738	0.112542
chr11	65430362	65430461	4805846	0	+	0.393939	(0.378,0.408]	chr11	446554	77	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	58	416	2	1.56976	1.57016	1.57056	0.0058914	0.00196331	0.0670365	0.0411469
chr22	21781467	21781567	7560518	0	-	0.46	(0.44,0.476]	chr22	773360	81	INTRON	INTRON	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	18	129	2	1.21482	1.569865	1.92491	0.0465428	0.00301776	0.15145	0.0507519
chr16	89687548	89687588	6421471	0	+	0.35	(0.32,0.35]	chr16	616474	1	SS3_ADJ	SS3_ADJ:SS5_ADJ:SS3_PROX:SS5_PROX:INTRON	CDK10	ENSG00000185324.22	ENST00000331006.12:ENST00000505473.5:ENST00000508723.5:ENST00000511415.5:ENST00000502547.5:ENST00000353379.12:ENST00000505733.5:ENST00000512912.5:ENST00000510811.6:ENST00000507205.5:ENST00000472018.5:ENST00000625631.1:ENST00000564192.5:ENST00000378277.8:ENST00000514965.5:ENST00000503560.1:ENST00000504473.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	78	2	1.46273	1.5698050000000001	1.67688	0.0451962	0.0361676	0.163755	0.138959
chr2	58221184	58221282	1126549	0	-	0.244898	[0,0.28]	chr2	120944	7	UTR3	UTR3:EXON_MRNA:INTRON	FANCL	ENSG00000115392.13	ENST00000696400.1:ENST00000403295.8:ENST00000696492.1:ENST00000427708.7:ENST00000696314.1:ENST00000696315.1:ENST00000696454.1:ENST00000696508.1:ENST00000696548.1:ENST00000696542.1:ENST00000696319.1:ENST00000403676.6:ENST00000696433.1:ENST00000696434.1:ENST00000696499.1:ENST00000696564.1:ENST00000402135.8:ENST00000696546.1:ENST00000233741.9:ENST00000696316.1:ENST00000696378.1:ENST00000696435.1:ENST00000696493.1:ENST00000696543.1:ENST00000696544.1:ENST00000696545.1:ENST00000696565.1:ENST00000696620.1:ENST00000696621.1:ENST00000696635.1:ENST00000696364.1:ENST00000696634.1:ENST00000696317.1:ENST00000696622.1:ENST00000696467.1:ENST00000696547.1:ENST00000449070.6:ENST00000696305.1:ENST00000417361.2:ENST00000696338.1:ENST00000696361.1:ENST00000696318.1:ENST00000696371.1:ENST00000696409.1:ENST00000696410.1:ENST00000696455.1:ENST00000696468.1:ENST00000696527.1:ENST00000696567.1:ENST00000696324.1:ENST00000696566.1:ENST00000696623.1:ENST00000446381.6:ENST00000696469.1:ENST00000696624.1:ENST00000696411.1:ENST00000470506.2:ENST00000696358.1:ENST00000696373.1:ENST00000696394.1:ENST00000696320.1:ENST00000696395.1:ENST00000696341.1:ENST00000696340.1:ENST00000696374.1:ENST00000696396.1:ENST00000696342.1:ENST00000696325.1:ENST00000696399.1:ENST00000696398.1:ENST00000696306.1:ENST00000696397.1:ENST00000696360.1:ENST00000696344.1:ENST00000696343.1:ENST00000696362.1:ENST00000696528.1:ENST00000696326.1:ENST00000696625.1:ENST00000696510.1:ENST00000696438.1:ENST00000696496.1:ENST00000696509.1:ENST00000696569.1:ENST00000696457.1:ENST00000696458.1:ENST00000696473.1:ENST00000696495.1:ENST00000696415.1:ENST00000696472.1:ENST00000696459.1:ENST00000696416.1:ENST00000696530.1:ENST00000696460.1:ENST00000696570.1:ENST00000696531.1:ENST00000696307.1:ENST00000696345.1:ENST00000696377.1:ENST00000696417.1:ENST00000696594.1:ENST00000696595.1:ENST00000696379.1:ENST00000696346.1:ENST00000696380.1:ENST00000696347.1:ENST00000696461.1:ENST00000696596.1:ENST00000696549.1:ENST00000696597.1:ENST00000696550.1:ENST00000696598.1:ENST00000696321.1:ENST00000696476.1:ENST00000696477.1:ENST00000696511.1:ENST00000481670.3:ENST00000696403.1:ENST00000696551.1:ENST00000696308.1:ENST00000696418.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	16	171	2	1.56431	1.5697800000000002	1.57525	0.0300984	0.0161993	0.129248	0.109464
chr7	152054506	152054605	3449799	0	+	0.434343	(0.408,0.44]	chr7	322435	264	INTRON	INTRON	GALNT11	ENSG00000178234.13	ENST00000430044.7:ENST00000482812.1:ENST00000431668.1:ENST00000446096.5:ENST00000447778.5:ENST00000423337.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	10	73	2	1.29431	1.569735	1.84516	0.0580322	0.0193431	0.188651	0.108861
chr2	167934704	167934804	1259150	0	-	0.43	(0.408,0.44]	chr2	133340	336	INTRON	INTRON	B3GALT1-AS1	ENSG00000235335.3	ENST00000430546.2:ENST00000657553.1:ENST00000670221.1:ENST00000436982.2	lncRNA	lncRNA	lncRNA	lncRNA	39	275	2	1.27801	1.569695	1.86138	0.0167552	0.00137586	0.103175	0.0340849
chr19	7930737	7930837	7130186	0	-	0.46	(0.44,0.476]	chr19	718301	2	SS5_PROX	SS5_PROX:INTRON	TIMM44	ENSG00000104980.8	ENST00000270538.8:ENST00000595565.5:ENST00000595831.5:ENST00000598968.5:ENST00000599650.1:ENST00000598481.1:ENST00000595876.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	13	92	2	1.37921	1.5695999999999999	1.75999	0.0307245	0.0176116	0.143385	0.105143
chr6	154749111	154749211	3001974	0	+	0.51	(0.476,0.515]	chr6	280737	67	INTRON	INTRON	SCAF8	ENSG00000213079.10	ENST00000367186.7:ENST00000417268.3:ENST00000461219.5:ENST00000367178.8:ENST00000464628.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	14	97	2	1.35157	1.5695299999999999	1.78749	0.0293212	0.0157618	0.141981	0.101453
chr8	129541444	129541543	4060697	0	-	0.292929	(0.28,0.32]	chr8	369648	309	INTRON	INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1:ENST00000676273.1:ENST00000667643.1:ENST00000668791.1:ENST00000663716.1:ENST00000663572.1:ENST00000676148.1:ENST00000667962.1:ENST00000674877.1:ENST00000675316.1:ENST00000674656.1:ENST00000446592.7:ENST00000667341.1:ENST00000675186.1:ENST00000652971.1:ENST00000661447.1:ENST00000674863.1:ENST00000675498.1:ENST00000675527.1:ENST00000676108.1:ENST00000657647.1:ENST00000675589.1:ENST00000675913.1:ENST00000675109.1:ENST00000671632.1:ENST00000671311.1:ENST00000676099.1:ENST00000660652.1:ENST00000675522.1:ENST00000675183.1:ENST00000658861.1:ENST00000663991.1:ENST00000675044.1:ENST00000675435.1:ENST00000674639.1:ENST00000676069.1:ENST00000675532.1:ENST00000674762.1:ENST00000523151.6:ENST00000675948.1:ENST00000665364.1:ENST00000657251.1:ENST00000675166.1:ENST00000674883.1:ENST00000675867.1:ENST00000674580.1:ENST00000675393.1:ENST00000520048.1:ENST00000674906.1:ENST00000676030.1:ENST00000670588.1:ENST00000675072.1:ENST00000664936.1:ENST00000652914.1:ENST00000657069.1	lncRNA	lncRNA	lncRNA	lncRNA	8	77	2	1.56118	1.569485	1.57779	0.0502605	0.0467152	0.1676	0.156383
chr2	39105841	39105941	1102186	0	-	0.46	(0.44,0.476]	chr2	118304	75	INTRON	INTRON	SOS1	ENSG00000115904.15	ENST00000692089.1:ENST00000402219.8:ENST00000690876.1:ENST00000395038.6:ENST00000691229.1:ENST00000689668.1:ENST00000690679.1:ENST00000461545.2:ENST00000451331.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	66	2	1.34221	1.5693549999999998	1.7965	0.0656882	0.0205549	0.181162	0.122348
chr19	55018923	55019023	7100347	0	+	0.37	(0.35,0.378]	chr19	712212	115	INTRON	INTRON	GP6-AS1	ENSG00000267265.6	ENST00000593060.5:ENST00000586845.1	lncRNA	lncRNA	lncRNA	lncRNA	16	127	2	1.34509	1.568825	1.79256	0.0406226	0.00602609	0.1451	0.0700813
chr17	30749032	30749131	6589978	0	+	0.494949	(0.476,0.515]	chr17	640860	53	INTRON	INTRON	SUZ12P1	ENSG00000264538.7	ENST00000578070.5:ENST00000579526.5:ENST00000690405.1:ENST00000497969.6:ENST00000578195.6:ENST00000582557.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	13	92	2	1.54352	1.5685850000000001	1.59365	0.0306944	0.0165511	0.13151	0.110511
chr17	1396332	1396432	6699570	0	-	0.53	(0.515,0.57]	chr17	655552	262	INTRON	INTRON	YWHAE	ENSG00000108953.17	ENST00000264335.13:ENST00000571732.5:ENST00000573026.1:ENST00000573196.5:ENST00000575977.1:ENST00000469398.5:ENST00000486241.1:ENST00000489287.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	49	2	1.44237	1.56822	1.69407	0.0459452	0.0456196	0.164236	0.149888
chr7	155647514	155647613	3451923	0	+	0.50505	(0.476,0.515]	chr7	322642	22	INTRON	INTRON	RBM33	ENSG00000184863.11	ENST00000287912.7:ENST00000401878.8:ENST00000392759.7	protein_coding	protein_coding	protein_coding	protein_coding	11	82	2	1.48272	1.5679699999999999	1.65322	0.0410274	0.0190363	0.161534	0.108861
chr1	112654971	112655071	186687	0	+	0.23	[0,0.28]	chr1	20662	3	SS5_PROX	SS5_PROX:INTRON	CAPZA1	ENSG00000116489.13	ENST00000476936.5:ENST00000263168.4:ENST00000498626.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	123	2	1.39598	1.567745	1.73951	0.0353767	0.0350227	0.149505	0.137535
chr19	57297607	57297705	7103669	0	+	0.459184	(0.44,0.476]	chr19	712863	2	EXON_LNCRNA	EXON_LNCRNA	ENSG00000288899	ENSG00000288899.1	ENST00000688255.1	lncRNA	lncRNA	lncRNA	lncRNA	9	66	2	1.44993	1.5676899999999998	1.68545	0.045367	0.0322071	0.164236	0.132543
chr20	5591237	5591336	7312144	0	-	0.343434	(0.32,0.35]	chr20	744600	46	INTRON	INTRON	GPCPD1	ENSG00000125772.14	ENST00000379019.7:ENST00000481690.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	18	138	2	1.19869	1.56764	1.93659	0.0366057	0.0108167	0.154144	0.087129
chr1	24664520	24664620	45967	0	+	0.39	(0.378,0.408]	chr1	5736	9	INTRON	INTRON	SRRM1	ENSG00000133226.18	ENST00000374389.8:ENST00000323848.14:ENST00000479034.5:ENST00000596378.1:ENST00000461768.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	69	2	1.37524	1.56762	1.76	0.0610755	0.023484	0.172411	0.128531
chr11	65442144	65442244	4805964	0	+	0.6	(0.57,1]	chr11	446554	195	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	39	138	2	1.35226	1.56758	1.7829	0.00696053	0.00104187	0.0754576	0.0293945
chr1	173895084	173895183	257017	0	+	0.40404	(0.378,0.408]	chr1	30716	91	UTR3	UTR3:EXON_MRNA	ZBTB37	ENSG00000185278.16	ENST00000367701.10	protein_coding	protein_coding	protein_coding	protein_coding	12	90	2	1.42854	1.567535	1.70653	0.0310699	0.0219966	0.143579	0.115395
chr21	39347828	39347915	7465694	0	-	0.436782	(0.408,0.44]	chr21	760606	5	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HMGN1	ENSG00000205581.11	ENST00000492280.5:ENST00000431390.5:ENST00000486741.5:ENST00000380749.10:ENST00000288344.14:ENST00000652622.1:ENST00000436324.5:ENST00000380748.5:ENST00000419378.5:ENST00000489072.5:ENST00000482192.5:ENST00000380747.5:ENST00000485550.5:ENST00000490032.5:ENST00000443046.5:ENST00000464078.5:ENST00000491183.5:ENST00000479586.5:ENST00000471260.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	21	151	2	1.40303	1.5671300000000001	1.73123	0.0164825	0.007646	0.110291	0.0753017
chr20	58902079	58902176	7291125	0	+	0.587629	(0.57,1]	chr20	741842	17	INTRON	INTRON	GNAS	ENSG00000087460.29	ENST00000313949.11:ENST00000371075.7:ENST00000419558.7:ENST00000657090.1:ENST00000453292.7:ENST00000306090.12:ENST00000472183.6:ENST00000462499.6:ENST00000482112.6:ENST00000663479.2:ENST00000490374.6:ENST00000467227.6:ENST00000676826.2:ENST00000371100.9:ENST00000371102.8:ENST00000464624.7:ENST00000349036.9:ENST00000488546.6:ENST00000667293.2:ENST00000481039.6:ENST00000467321.6:ENST00000477931.5:ENST00000485673.6:ENST00000470512.6:ENST00000464788.6:ENST00000469431.6:ENST00000604005.6:ENST00000478585.6:ENST00000480975.5:ENST00000480232.6:ENST00000683015.1:ENST00000461152.6:ENST00000371095.7:ENST00000265620.11:ENST00000354359.12:ENST00000371085.8:ENST00000468895.6:ENST00000682803.1:ENST00000488652.6:ENST00000476935.6:ENST00000492907.6:ENST00000603546.2:ENST00000684284.1:ENST00000682134.1:ENST00000682829.1:ENST00000487862.5:ENST00000496934.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	13	47	2	1.14179	1.56712	1.99245	0.0669313	0.00568465	0.183051	0.0678837
chr1	112660778	112660878	186747	0	+	0.28	[0,0.28]	chr1	20673	6	INTRON	INTRON	CAPZA1	ENSG00000116489.13	ENST00000476936.5:ENST00000263168.4:ENST00000498626.1:ENST00000466066.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	140	2	1.52961	1.56678	1.60395	0.0394621	0.0203292	0.143072	0.121586
chr2	131212960	131213058	865488	0	+	0.510204	(0.476,0.515]	chr2	97182	14	INTRON	INTRON	PLEKHB2:POTEE	ENSG00000115762.17:ENSG00000188219.16	ENST00000404460.5:ENST00000683005.1	protein_coding	protein_coding	protein_coding	protein_coding	13	95	2	1.34709	1.5667149999999999	1.78634	0.0408438	0.0115559	0.161534	0.0889104
chr5	77773904	77774004	2647210	0	-	0.39	(0.378,0.408]	chr5	251578	587	INTRON	INTRON	TBCA	ENSG00000171530.15	ENST00000380377.9:ENST00000306388.10:ENST00000520361.5:ENST00000651106.1:ENST00000518338.6:ENST00000522370.1:ENST00000520039.1	protein_coding	protein_coding	protein_coding	protein_coding	18	137	2	1.51434	1.56658	1.61882	0.015731	0.012668	0.109464	0.0926667
chr6	15259057	15259157	2823076	0	+	0.43	(0.408,0.44]	chr6	265190	97	INTRON	INTRON	JARID2	ENSG00000008083.14	ENST00000341776.7:ENST00000397311.4	protein_coding	protein_coding	protein_coding	protein_coding	19	133	2	1.44444	1.56629	1.68814	0.0138181	0.0135006	0.10247	0.0949306
chr9	4827533	4827631	4095214	0	+	0.367347	(0.35,0.378]	chr9	373168	1	INTRON	INTRON	RCL1	ENSG00000120158.12	ENST00000381750.9:ENST00000442869.5:ENST00000473230.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	69	2	1.42644	1.566255	1.70607	0.0482819	0.0390715	0.161228	0.153283
chr17	76266859	76266957	6677151	0	+	0.459184	(0.44,0.476]	chr17	652074	5	INTRON	INTRON	UBALD2	ENSG00000185262.9	ENST00000327490.8:ENST00000587913.1:ENST00000589240.1	protein_coding	protein_coding	protein_coding	protein_coding	20	141	2	1.56025	1.566025	1.5718	0.0170387	0.00825324	0.104099	0.0813266
chr17	76564383	76564480	6677407	0	+	0.42268	(0.408,0.44]	chr17	652151	14	EXON_LNCRNA	EXON_LNCRNA	SNHG16	ENSG00000163597.16	ENST00000661348.2:ENST00000670737.2:ENST00000653677.2:ENST00000493536.7:ENST00000667091.1:ENST00000586846.2:ENST00000448136.5:ENST00000668511.1:ENST00000590435.5:ENST00000587838.2	lncRNA	lncRNA	lncRNA	lncRNA	53	386	2	1.43483	1.56589	1.69695	0.00549519	0.00222747	0.0672785	0.0421465
chr22	20041960	20042060	7477954	0	+	0.48	(0.476,0.515]	chr22	762638	45	INTRON	INTRON	TANGO2	ENSG00000183597.16	ENST00000401886.5:ENST00000471707.5:ENST00000432198.5:ENST00000475446.5:ENST00000420290.6:ENST00000432883.5:ENST00000434570.6:ENST00000447208.6:ENST00000456048.5:ENST00000411907.5:ENST00000398042.6:ENST00000399807.7:ENST00000450664.5:ENST00000450019.5:ENST00000327374.9:ENST00000479679.5:ENST00000430807.5:ENST00000401833.5:ENST00000434168.5:ENST00000444651.5:ENST00000462579.5:ENST00000485715.2:ENST00000484373.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	75	2	1.53534	1.5658349999999999	1.59633	0.0476737	0.0233044	0.170116	0.118272
chr22	20100285	20100385	7478439	0	+	0.51	(0.476,0.515]	chr22	762741	51	INTRON	INTRON	DGCR8	ENSG00000128191.16	ENST00000383024.6:ENST00000351989.8:ENST00000495826.5:ENST00000407755.1:ENST00000498171.5:ENST00000491892.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	58	2	1.32871	1.565775	1.80284	0.0678032	0.033161	0.184298	0.145899
chr17	39364411	39364511	6766280	0	-	0.48	(0.476,0.515]	chr17	665497	208	INTRON	INTRON	FBXL20	ENSG00000108306.13	ENST00000264658.11:ENST00000583610.5:ENST00000394294.7:ENST00000577399.5:ENST00000647139.1	protein_coding	protein_coding	protein_coding	protein_coding	8	54	2	1.40573	1.565655	1.72558	0.0767648	0.0410362	0.196164	0.161534
chr1	2236552	2236651	2248	0	+	0.50505	(0.476,0.515]	chr1	553	35	INTRON	INTRON	SKI	ENSG00000157933.10	ENST00000378536.5:ENST00000508416.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	57	2	1.38864	1.5655700000000001	1.7425	0.0547008	0.0417334	0.182743	0.147007
chr1	113943955	113944055	191943	0	+	0.39	(0.378,0.408]	chr1	21149	21	INTRON	INTRON	HIPK1	ENSG00000163349.22	ENST00000426820.7:ENST00000626993.2:ENST00000369559.8:ENST00000369558.5:ENST00000369561.8:ENST00000369555.6	protein_coding	protein_coding	protein_coding	protein_coding	8	60	2	1.54765	1.5655700000000001	1.58349	0.0653091	0.0334147	0.180158	0.146709
chr2	107707315	107707414	1205622	0	-	0.333333	(0.32,0.35]	chr2	128526	36	INTRON	INTRON	LINC01885:ENSG00000286769	ENSG00000237880.2:ENSG00000286769.1	ENST00000654481.1:ENST00000669817.1	lncRNA	lncRNA	lncRNA	lncRNA	14	116	2	1.16171	1.5651950000000001	1.96868	0.0663637	0.00749728	0.18226	0.0773151
chr1	23028083	23028182	43844	0	+	0.313131	(0.28,0.32]	chr1	5252	78	INTRON	INTRON	KDM1A	ENSG00000004487.18	ENST00000692214.1:ENST00000686934.1:ENST00000689853.1:ENST00000465864.2:ENST00000691256.1:ENST00000688122.1:ENST00000692056.1:ENST00000692853.1:ENST00000689366.1:ENST00000686270.1:ENST00000685102.1:ENST00000690627.1:ENST00000686771.1:ENST00000692209.1:ENST00000686339.1:ENST00000691813.1:ENST00000693156.1:ENST00000688235.1:ENST00000692975.1:ENST00000687202.1:ENST00000691682.1:ENST00000691404.1:ENST00000691694.1:ENST00000688680.1:ENST00000356634.7:ENST00000400181.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	17	139	2	1.28835	1.565175	1.842	0.0278511	0.023346	0.137011	0.118323
chr16	30250826	30250926	6472617	0	-	0.52	(0.515,0.57]	chr16	625566	46	INTRON	INTRON	NPIPB13	ENSG00000198064.14	ENST00000568053.5	protein_coding	protein_coding	protein_coding	protein_coding	34	203	2	1.2977	1.565105	1.83251	0.0131048	0.00172859	0.0998547	0.0374928
chr8	11824036	11824133	3702743	0	+	0.505155	(0.476,0.515]	chr8	343510	18	INTRON	INTRON	FDFT1	ENSG00000079459.13	ENST00000538689.4:ENST00000615631.4:ENST00000618539.4:ENST00000623368.3:ENST00000446331.6:ENST00000443614.6:ENST00000220584.9:ENST00000525607.5:ENST00000525283.5:ENST00000529464.5:ENST00000525900.5:ENST00000528812.5:ENST00000622850.2:ENST00000530664.5:ENST00000525954.5:ENST00000531249.2:ENST00000532266.5:ENST00000528643.5:ENST00000525777.5:ENST00000528729.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	12	82	2	1.23327	1.565045	1.89682	0.0507667	0.0158424	0.175935	0.101453
chr19	55006573	55006668	7100223	0	+	0.221053	[0,0.28]	chr19	712211	5	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	GP6-AS1	ENSG00000267265.6	ENST00000593060.5:ENST00000690314.1:ENST00000586845.1	lncRNA	lncRNA	lncRNA	lncRNA	17	180	2	1.40996	1.5649350000000002	1.71991	0.0261541	0.018319	0.133676	0.108367
chr1	167965629	167965728	248779	0	+	0.484848	(0.476,0.515]	chr1	29542	134	INTRON	INTRON	DCAF6	ENSG00000143164.16	ENST00000450548.5:ENST00000470919.5:ENST00000432587.6:ENST00000367843.7:ENST00000470721.5:ENST00000367840.4:ENST00000312263.10:ENST00000455334.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	13	92	2	1.55865	1.56491	1.57117	0.034348	0.0148125	0.135807	0.106702
chr7	152057004	152057104	3449824	0	+	0.42	(0.408,0.44]	chr7	322435	289	INTRON	INTRON	GALNT11	ENSG00000178234.13	ENST00000430044.7:ENST00000482812.1:ENST00000431668.1:ENST00000446096.5:ENST00000447778.5:ENST00000423337.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	12	87	2	1.27107	1.564865	1.85866	0.056267	0.0106944	0.166399	0.091856
chr9	137633813	137633913	4223620	0	+	0.46	(0.44,0.476]	chr9	388152	134	INTRON	INTRON	EHMT1	ENSG00000181090.21	ENST00000462484.5:ENST00000371394.6:ENST00000630754.2:ENST00000460843.6:ENST00000626216.2:ENST00000637593.1:ENST00000629335.2:ENST00000637335.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	11	80	2	1.38315	1.5647950000000002	1.74644	0.0472692	0.0165016	0.152795	0.110334
chr7	140465615	140465714	3661488	0	-	0.424242	(0.408,0.44]	chr7	339916	50	INTRON	INTRON	MKRN1	ENSG00000133606.11	ENST00000255977.7:ENST00000475010.5:ENST00000495305.5:ENST00000474576.5:ENST00000480552.5:ENST00000496169.5:ENST00000443720.6:ENST00000471104.5:ENST00000467513.5:ENST00000494939.1:ENST00000498535.1:ENST00000473444.1:ENST00000475180.5:ENST00000481705.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	73	2	1.44993	1.564705	1.67948	0.0638951	0.0154364	0.177824	0.108739
chr10	118727348	118727444	4704140	0	-	0.395833	(0.378,0.408]	chr10	433886	11	INTRON	INTRON	CACUL1	ENSG00000151893.15	ENST00000369151.8:ENST00000493518.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	84	2	1.29877	1.564555	1.83034	0.0751206	0.00851588	0.19367	0.0833995
chr7	50608957	50609057	3530811	0	-	0.31	(0.28,0.32]	chr7	329409	20	INTRON	INTRON	GRB10	ENSG00000106070.20	ENST00000335866.7:ENST00000398812.6:ENST00000398810.6:ENST00000401949.6:ENST00000402578.5:ENST00000644769.1:ENST00000403097.6:ENST00000644879.1:ENST00000406641.5:ENST00000402497.6:ENST00000357271.9:ENST00000643299.1:ENST00000407526.6:ENST00000645075.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	23	203	2	1.37163	1.5644	1.75717	0.0174408	0.0112583	0.11269	0.0884004
chr10	73061167	73061267	4647484	0	-	0.39	(0.378,0.408]	chr10	427530	72	INTRON	INTRON	P4HA1	ENSG00000122884.13	ENST00000394890.7:ENST00000307116.6:ENST00000373008.6:ENST00000440381.5:ENST00000263556.3	protein_coding	protein_coding	protein_coding	protein_coding	20	143	2	1.39077	1.56424	1.73771	0.0159662	0.011556	0.109464	0.0889104
chr7	127367948	127368048	3633993	0	-	0.38	(0.378,0.408]	chr7	337749	33	INTRON	INTRON	ZNF800	ENSG00000048405.11	ENST00000485577.1	protein_coding	processed_transcript	protein_coding	processed_transcript	8	62	2	1.56313	1.564215	1.5653	0.0474151	0.043739	0.162255	0.153019
chr19	2272636	2272734	6997106	0	+	0.683673	(0.57,1]	chr19	693662	8	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	OAZ1	ENSG00000104904.12	ENST00000590943.6:ENST00000602676.6:ENST00000581150.6:ENST00000582888.8:ENST00000593012.1:ENST00000588673.3:ENST00000586054.2:ENST00000589361.2:ENST00000592727.3:ENST00000589739.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	33	100	2	1.02084	1.564145	2.10745	0.0317169	0.00123383	0.144731	0.0322271
chr1	182388750	182388847	599038	0	-	0.412371	(0.408,0.44]	chr1	71414	1	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	GLUL	ENSG00000135821.19	ENST00000331872.11:ENST00000642379.1:ENST00000311223.9:ENST00000417584.6:ENST00000339526.8:ENST00000491322.1:ENST00000463851.6:ENST00000484996.5:ENST00000489818.5:ENST00000475808.5:ENST00000480604.5:ENST00000462444.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	93	2	1.54151	1.56407	1.58663	0.0368312	0.0138313	0.138959	0.10247
chr11	2977983	2978083	4891850	0	-	0.36	(0.35,0.378]	chr11	458341	3	SS5_PROX	SS5_PROX:INTRON	NAP1L4	ENSG00000205531.13	ENST00000620138.4:ENST00000380542.9:ENST00000526115.5:ENST00000532325.6:ENST00000448187.5:ENST00000399614.6:ENST00000430811.5:ENST00000529361.5:ENST00000528968.5:ENST00000530064.5:ENST00000526842.5:ENST00000531291.5:ENST00000455338.6:ENST00000534372.1	protein_coding	protein_coding	protein_coding	protein_coding	10	75	2	1.422	1.564035	1.70607	0.0482819	0.032366	0.153283	0.145026
chr3	10126493	10126593	1363103	0	+	0.37	(0.35,0.378]	chr3	143659	3	UTR3	UTR3:EXON_MRNA	BRK1	ENSG00000254999.4	ENST00000530758.2	protein_coding	protein_coding	protein_coding	protein_coding	10	75	2	1.422	1.564035	1.70607	0.0482819	0.032366	0.153283	0.145026
chr11	9588997	9589095	4730961	0	+	0.357143	(0.35,0.378]	chr11	438137	5	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	WEE1	ENSG00000166483.12	ENST00000680141.1:ENST00000450114.7:ENST00000299613.10:ENST00000681684.1:ENST00000530712.6:ENST00000527848.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	19	148	2	1.47372	1.56402	1.65432	0.014478	0.0137071	0.10521	0.0949306
chr1	204550079	204550178	297769	0	+	0.434343	(0.408,0.44]	chr1	34331	5	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	MDM4	ENSG00000198625.14	ENST00000367183.7:ENST00000391947.6:ENST00000454264.6:ENST00000612738.4:ENST00000614459.4:ENST00000616250.4:ENST00000367182.8:ENST00000463049.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	53	373	2	1.26311	1.56398	1.86485	0.0150988	6.72883e-4	0.0994339	0.023543
chr7	157233221	157233321	3454906	0	+	0.35	(0.32,0.35]	chr7	323002	15	INTRON	INTRON	UBE3C	ENSG00000009335.18	ENST00000348165.10:ENST00000470408.5:ENST00000494532.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	16	135	2	1.49199	1.563945	1.6359	0.0308519	0.0103455	0.13151	0.0896084
chr1	17413178	17413278	384714	0	-	0.47	(0.44,0.476]	chr1	45453	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RCC2	ENSG00000179051.14	ENST00000375436.9:ENST00000375433.3	protein_coding	protein_coding	protein_coding	protein_coding	10	72	2	1.29261	1.5636	1.83459	0.0583425	0.0198542	0.189184	0.109608
chr1	42685056	42685155	83969	0	+	0.393939	(0.378,0.408]	chr1	11020	12	INTRON	INTRON	YBX1	ENSG00000065978.19	ENST00000321358.12:ENST00000332220.10:ENST00000436427.1:ENST00000467957.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	97	2	1.32231	1.56357	1.80483	0.0374268	0.0201276	0.140008	0.121243
chr12	120461931	120462018	5433939	0	-	0.356322	(0.35,0.378]	chr12	519494	4	UTR3	UTR3:EXON_MRNA	SRSF9	ENSG00000111786.9	ENST00000229390.8:ENST00000548326.1:ENST00000548792.1:ENST00000603963.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	23	183	2	1.05133	1.56355	2.07577	0.0557968	0.00185784	0.18407	0.0389847
chr7	152174642	152174742	3678623	0	-	0.31	(0.28,0.32]	chr7	341455	4	SS3_PROX	SS3_PROX:INTRON	KMT2C	ENSG00000055609.21	ENST00000360104.8:ENST00000262189.11:ENST00000680877.1:ENST00000679560.1:ENST00000683120.1:ENST00000679393.1:ENST00000683200.1:ENST00000684261.1:ENST00000682283.1:ENST00000473186.5:ENST00000679882.1:ENST00000683397.1:ENST00000684307.1:ENST00000683625.1:ENST00000684398.1:ENST00000683670.1:ENST00000680969.1:ENST00000681033.1:ENST00000682176.1:ENST00000683159.1:ENST00000558665.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	76	2	1.4428	1.563455	1.68411	0.0712927	0.0323543	0.185716	0.145026
chr1	38996476	38996575	74450	0	+	0.414141	(0.408,0.44]	chr1	9628	45	INTRON	INTRON	AKIRIN1	ENSG00000174574.16	ENST00000432648.8:ENST00000372984.8:ENST00000446189.6:ENST00000531822.1	protein_coding	protein_coding	protein_coding	protein_coding	16	113	2	1.14366	1.563425	1.98319	0.0589879	0.0042785	0.167915	0.0598356
chr6	27147788	27147888	2838372	0	+	0.41	(0.408,0.44]	chr6	266321	2	PRIMIRNA	PRIMIRNA	MIR3143	ENSG00000265565.1	ENST00000584253.1	miRNA	primary_miRNA	miRNA	primary_miRNA	20	153	2	1.24825	1.563355	1.87846	0.0375059	0.00333226	0.156054	0.0512081
chrX	41334397	41334493	7645644	0	+	0.697917	(0.57,1]	chrX	782481	1	SS5_PROX	SS5_PROX:INTRON	DDX3X	ENSG00000215301.11	ENST00000625837.2:ENST00000626301.2:ENST00000629785.2:ENST00000630255.2:ENST00000630370.2:ENST00000630858.2:ENST00000629496.3:ENST00000610559.5:ENST00000611546.2:ENST00000478993.5:ENST00000457138.7:ENST00000643821.1:ENST00000644876.2:ENST00000399959.7:ENST00000644074.1:ENST00000645338.1:ENST00000646196.1:ENST00000642793.1:ENST00000646940.1:ENST00000644307.1:ENST00000645561.1:ENST00000645080.1:ENST00000642597.1:ENST00000642722.1:ENST00000644109.1:ENST00000644958.1:ENST00000646122.1:ENST00000644513.1:ENST00000645589.1:ENST00000441189.4:ENST00000646822.1:ENST00000631641.2:ENST00000615742.4:ENST00000647219.1:ENST00000480592.6:ENST00000646223.1:ENST00000643963.1:ENST00000646319.1:ENST00000645783.1:ENST00000642624.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	12	45	2	1.42137	1.5630899999999999	1.70481	0.0395751	0.0130959	0.161534	0.0934992
chr1	50921980	50922080	451873	0	-	0.5	(0.476,0.515]	chr1	54267	636	INTRON	INTRON	FAF1	ENSG00000185104.21	ENST00000396153.7:ENST00000487898.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	66	2	1.486	1.56281	1.63962	0.0430512	0.0346854	0.148144	0.148082
chr3	37278779	37278878	1396111	0	+	0.383838	(0.378,0.408]	chr3	146333	23	INTRON	INTRON	GOLGA4	ENSG00000144674.17	ENST00000435830.6:ENST00000444882.5:ENST00000356847.8:ENST00000450863.6:ENST00000361924.7:ENST00000429018.5:ENST00000431105.1:ENST00000419177.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	24	181	2	1.22531	1.5624099999999999	1.89951	0.0424725	0.0013326	0.148082	0.0335308
chr11	86021274	86021373	5014358	0	-	0.424242	(0.408,0.44]	chr11	472995	60	INTRON	INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000630913.2:ENST00000528398.5:ENST00000356360.9:ENST00000534412.5:ENST00000531771.5:ENST00000531558.1:ENST00000531930.5:ENST00000532041.5:ENST00000525162.5:ENST00000528256.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	33	231	2	1.51992	1.562345	1.60477	0.0124119	0.0029848	0.0918925	0.0503131
chr3	195684924	195685021	1593713	0	+	0.556701	(0.515,0.57]	chr3	165079	16	EXON_LNCRNA	EXON_LNCRNA:INTRON	MUC20-OT1	ENSG00000242086.8	ENST00000429897.5:ENST00000445430.5:ENST00000600527.5:ENST00000626089.2:ENST00000451982.6:ENST00000601648.5:ENST00000414625.6:ENST00000628917.2:ENST00000625358.2:ENST00000602127.5:ENST00000625882.2:ENST00000625632.2:ENST00000626706.1:ENST00000627767.1:ENST00000627502.2:ENST00000597034.5:ENST00000629823.2:ENST00000630243.2:ENST00000608699.3:ENST00000627718.2	lncRNA	lncRNA	lncRNA	lncRNA	17	94	2	1.09094	1.56231	2.03368	0.0511683	0.00803127	0.157789	0.0803474
chr22	21790792	21790891	7560614	0	-	0.383838	(0.378,0.408]	chr22	773370	16	INTRON	INTRON	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	29	187	2	1.15458	1.5622099999999999	1.96984	0.0253372	0.00444276	0.133676	0.0591386
chr16	84721502	84721602	6410118	0	+	0.46	(0.44,0.476]	chr16	615272	46	INTRON	INTRON	USP10	ENSG00000103194.16	ENST00000562743.5:ENST00000540269.6:ENST00000563892.5:ENST00000562092.1:ENST00000569511.5:ENST00000219473.12:ENST00000570191.5:ENST00000563048.5:ENST00000562283.5:ENST00000563386.5:ENST00000569038.5:ENST00000570053.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	22	148	2	1.00034	1.562175	2.12401	0.0611268	0.00203061	0.193423	0.04086
chr1	150335641	150335741	221494	0	+	0.55	(0.515,0.57]	chr1	24995	4	SS5_PROX	SS5_PROX:INTRON	PRPF3	ENSG00000117360.13	ENST00000324862.7:ENST00000467329.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	62	2	1.43029	1.56207	1.69385	0.0645632	0.0139144	0.179192	0.10247
chr19	15298145	15298245	7147062	0	-	0.46	(0.44,0.476]	chr19	721965	178	INTRON	INTRON	BRD4	ENSG00000141867.19	ENST00000679869.1:ENST00000360016.9:ENST00000594841.5:ENST00000597315.5:ENST00000601941.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	63	2	1.4592	1.5619100000000001	1.66462	0.0520247	0.0342963	0.159508	0.147255
chr7	111326984	111327084	3621752	0	-	0.38	(0.378,0.408]	chr7	337093	3631	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	47	2	1.53052	1.561845	1.59317	0.0744544	0.0603812	0.192012	0.19151
chr1	8876031	8876131	374281	0	-	0.32	(0.28,0.32]	chr1	43654	1	SS3_ADJ	SS3_ADJ:SS5_ADJ:SS3_PROX:SS5_PROX:INTRON	ENO1	ENSG00000074800.16	ENST00000234590.10:ENST00000647408.1:ENST00000646370.2:ENST00000645609.1:ENST00000497492.1:ENST00000646660.1:ENST00000646680.1:ENST00000646906.1:ENST00000646156.1:ENST00000643438.1:ENST00000489867.2:ENST00000486051.5:ENST00000492343.2:ENST00000414948.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	13	122	2	1.46548	1.56175	1.65802	0.0299501	0.0234847	0.142135	0.118716
chr4	17627357	17627457	1926981	0	+	0.43	(0.408,0.44]	chr4	193701	18	UTR3	UTR3:EXON_MRNA:INTRON	MED28	ENSG00000118579.13	ENST00000237380.12:ENST00000503945.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	81	2	1.45405	1.56175	1.66945	0.0381812	0.0218479	0.141795	0.123836
chr6	35675534	35675634	3087386	0	-	0.45	(0.44,0.476]	chr6	288789	323	INTRON	INTRON	FKBP5	ENSG00000096060.15	ENST00000536438.5:ENST00000539068.5:ENST00000357266.9:ENST00000542713.1	protein_coding	protein_coding	protein_coding	protein_coding	9	66	2	1.42079	1.5616050000000001	1.70242	0.0526065	0.0282713	0.160978	0.137721
chr9	123164529	123164628	4339428	0	-	0.424242	(0.408,0.44]	chr9	398906	31	INTRON	INTRON	STRBP	ENSG00000165209.19	ENST00000348403.10:ENST00000447404.6:ENST00000360998.3:ENST00000407982.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	13	89	2	1.42291	1.56135	1.69979	0.0310346	0.0222978	0.13151	0.124385
chr3	152371092	152371192	1536012	0	+	0.4	(0.378,0.408]	chr3	160003	355	INTRON	INTRON	MBNL1	ENSG00000152601.18	ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000495875.6:ENST00000324210.10:ENST00000493459.5:ENST00000459747.1:ENST00000460591.5:ENST00000545754.5:ENST00000357472.7:ENST00000324196.9:ENST00000498502.5:ENST00000463374.5:ENST00000485910.5:ENST00000465907.6:ENST00000492948.5:ENST00000485509.5:ENST00000464596.5	protein_coding	protein_coding	protein_coding	protein_coding	14	105	2	1.395	1.5611700000000002	1.72734	0.0467334	0.00773535	0.151763	0.0786575
chr17	81510099	81510197	6848461	0	-	0.397959	(0.378,0.408]	chr17	678009	8	UTR3	UTR3:EXON_MRNA	ACTG1	ENSG00000184009.13	ENST00000681052.1:ENST00000576544.6:ENST00000681842.1:ENST00000573283.7:ENST00000615544.5:ENST00000570382.2:ENST00000679480.1:ENST00000679778.1:ENST00000574671.6:ENST00000576214.3:ENST00000679410.1:ENST00000681092.1:ENST00000680227.1:ENST00000680727.1:ENST00000572105.7:ENST00000679535.1:ENST00000575842.5:ENST00000576917.5:ENST00000576209.5:ENST00000575087.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	46	315	2	1.33477	1.56106	1.78735	0.00811678	0.00325085	0.0810557	0.0508595
chr6	154738882	154738981	3001871	0	+	0.373737	(0.35,0.378]	chr6	280731	46	INTRON	INTRON	SCAF8	ENSG00000213079.10	ENST00000367186.7:ENST00000417268.3:ENST00000461219.5:ENST00000367178.8:ENST00000464628.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	14	110	2	1.44681	1.56087	1.67493	0.0247768	0.0192907	0.131872	0.108861
chr6	167868895	167868994	3034759	0	+	0.474747	(0.44,0.476]	chr6	282719	38	INTRON	INTRON	AFDN	ENSG00000130396.21	ENST00000683244.1:ENST00000400825.8:ENST00000351017.9:ENST00000344191.8:ENST00000392112.5:ENST00000392108.7:ENST00000400824.8:ENST00000400822.7:ENST00000447894.6:ENST00000366809.6:ENST00000366806.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	60	2	1.43625	1.5608499999999998	1.68545	0.063142	0.0322071	0.197183	0.132543
chr1	10280233	10280332	21367	0	+	0.484848	(0.476,0.515]	chr1	2124	7	INTRON	INTRON	KIF1B	ENSG00000054523.20	ENST00000676179.1:ENST00000377093.9:ENST00000696500.1:ENST00000263934.10:ENST00000696502.1:ENST00000696503.1:ENST00000696504.1:ENST00000377086.5:ENST00000377083.5:ENST00000377081.5:ENST00000620295.2:ENST00000622724.3:ENST00000495136.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	57	2	1.48272	1.56055	1.63838	0.0555021	0.0410274	0.165463	0.161534
chr3	100292694	100292793	1465891	0	+	0.484848	(0.476,0.515]	chr3	153619	16	INTRON	INTRON	TBC1D23	ENSG00000036054.13	ENST00000394144.9:ENST00000344949.9:ENST00000486274.5:ENST00000475134.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	57	2	1.48272	1.56055	1.63838	0.0555021	0.0410274	0.165463	0.161534
chr9	131133905	131134003	4215707	0	+	0.346939	(0.32,0.35]	chr9	386536	3	INTRON	INTRON	NUP214	ENSG00000126883.19	ENST00000695497.1:ENST00000695498.1:ENST00000695496.1:ENST00000695495.1:ENST00000695494.1:ENST00000695493.1:ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000525561.2:ENST00000651022.1:ENST00000695499.1:ENST00000530843.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	78	2	1.37958	1.560465	1.74135	0.0577841	0.0298264	0.188484	0.129138
chr5	113015364	113015463	2453783	0	+	0.353535	(0.35,0.378]	chr5	235130	20	UTR3	UTR3:EXON_MRNA	DCP2	ENSG00000172795.17	ENST00000515408.5:ENST00000389063.3:ENST00000674880.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	99	704	2	1.31234	1.560445	1.80855	0.00601562	0.0014016	0.0700813	0.0340865
chr7	131426742	131426841	3417439	0	+	0.474747	(0.44,0.476]	chr7	319231	117	INTRON	INTRON	MKLN1	ENSG00000128585.18	ENST00000421797.6:ENST00000352689.11:ENST00000494785.5:ENST00000458153.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	59	2	1.5191	1.56043	1.60176	0.0526241	0.0389597	0.160983	0.160861
chr16	31182422	31182512	6340576	0	+	0.455556	(0.44,0.476]	chr16	608321	1	SSB_ADJ	SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	FUS	ENSG00000089280.19	ENST00000566605.5:ENST00000254108.12:ENST00000380244.7:ENST00000487045.6:ENST00000487509.6:ENST00000568685.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	16	118	2	1.4678	1.5603850000000001	1.65297	0.0331814	0.0150988	0.145918	0.0994339
chr6	136274189	136274289	3230960	0	-	0.34	(0.32,0.35]	chr6	300374	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	BCLAF1	ENSG00000029363.17	ENST00000640069.1:ENST00000531224.6:ENST00000353331.8:ENST00000527536.5:ENST00000527613.5:ENST00000530767.5:ENST00000527759.5:ENST00000534269.5:ENST00000532384.5:ENST00000530429.5:ENST00000392348.6:ENST00000628517.2:ENST00000529826.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	80	2	1.38748	1.56033	1.73318	0.0462868	0.0373731	0.155878	0.150684
chr3	196068873	196068954	1897414	0	-	0.419753	(0.408,0.44]	chr3	189951	4	INTRON	INTRON	TFRC	ENSG00000072274.13	ENST00000420415.5:ENST00000360110.9:ENST00000392396.7:ENST00000491658.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	91	631	2	1.46767	1.560285	1.6529	0.00652593	7.48797e-4	0.0699952	0.0250959
chr2	61216863	61216961	1127928	0	-	0.418367	(0.408,0.44]	chr2	121157	18	INTRON	INTRON	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000411912.5:ENST00000463046.5:ENST00000476716.5:ENST00000472689.5:ENST00000472706.5:ENST00000490527.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	13	93	2	1.50652	1.56014	1.61376	0.0410276	0.0123659	0.1451	0.0973643
chr20	47347655	47347755	7349421	0	-	0.38	(0.378,0.408]	chr20	749347	4	SS5_PROX	SS5_PROX:INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000435836.5:ENST00000446894.5:ENST00000441977.1	protein_coding	protein_coding	protein_coding	protein_coding	13	101	2	1.53041	1.56013	1.58985	0.0290335	0.0207915	0.141186	0.111469
chr7	26194386	26194482	3506165	0	-	0.53125	(0.515,0.57]	chr7	327165	3	INTRON	INTRON	HNRNPA2B1	ENSG00000122566.22	ENST00000679318.1:ENST00000677339.1:ENST00000678501.1:ENST00000676903.1:ENST00000608362.2:ENST00000677631.1:ENST00000676749.1:ENST00000677574.1:ENST00000679123.1:ENST00000677906.1:ENST00000476233.2:ENST00000677669.1:ENST00000677321.1:ENST00000678277.1:ENST00000677571.1:ENST00000679124.1:ENST00000676932.1:ENST00000678973.1:ENST00000678183.1:ENST00000679021.1:ENST00000678035.1:ENST00000677075.1:ENST00000678075.1:ENST00000678631.1:ENST00000678998.1:ENST00000490912.6:ENST00000354667.8:ENST00000618183.5:ENST00000677839.1:ENST00000677037.1:ENST00000678449.1:ENST00000679001.1:ENST00000678962.1:ENST00000676524.1:ENST00000678935.1:ENST00000678675.1:ENST00000676746.1:ENST00000356674.8:ENST00000678431.1:ENST00000678697.1:ENST00000678779.1:ENST00000676497.1:ENST00000677396.1:ENST00000360787.8:ENST00000679243.1:ENST00000677656.1:ENST00000463181.5:ENST00000678884.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	41	248	2	1.50905	1.559755	1.61046	0.00472211	0.00304705	0.0600445	0.0509893
chr19	8322271	8322368	7010328	0	+	0.525773	(0.515,0.57]	chr19	696064	1	UTR3	UTR3:EXON_MRNA	RPS28	ENSG00000233927.5	ENST00000449223.3:ENST00000602140.1:ENST00000600659.3:ENST00000417088.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	75	424	2	1.40244	1.559675	1.71691	0.00310653	0.00145212	0.0512344	0.0344156
chr5	65559681	65559780	2634260	0	-	0.383838	(0.378,0.408]	chr5	250195	44	INTRON	INTRON	CENPK	ENSG00000123219.13	ENST00000514814.5:ENST00000396679.6:ENST00000508421.5:ENST00000510693.5:ENST00000506282.6:ENST00000505960.5:ENST00000515497.5:ENST00000515873.5:ENST00000510768.5:ENST00000510354.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	10	77	2	1.50417	1.559525	1.61488	0.0384675	0.029782200000000002	0.159169	0.129138
chr3	138699990	138700088	1830137	0	-	0.326531	(0.32,0.35]	chr3	183986	5	INTRON	INTRON	PIK3CB	ENSG00000051382.9	ENST00000674063.1:ENST00000289153.6:ENST00000477593.5:ENST00000469284.6:ENST00000544716.5:ENST00000462898.5:ENST00000481749.5:ENST00000493568.5:ENST00000473435.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	74	2	1.47118	1.5594350000000001	1.64769	0.0578603	0.0345598	0.167723	0.148144
chr1	160248820	160248920	571474	0	-	0.49	(0.476,0.515]	chr1	69176	44	INTRON	INTRON	DCAF8	ENSG00000132716.19	ENST00000326837.6:ENST00000368073.7:ENST00000368074.6:ENST00000461888.5:ENST00000475733.5:ENST00000610139.5:ENST00000447377.5:ENST00000495887.1:ENST00000440682.5:ENST00000407642.6:ENST00000419626.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	62	2	1.27903	1.55932	1.83961	0.0608608	0.0314489	0.19287	0.13151
chr1	168247031	168247131	250375	0	+	0.25	[0,0.28]	chr1	29769	46	UTR3	UTR3:EXON_MRNA	SFT2D2	ENSG00000213064.10	ENST00000271375.7	protein_coding	protein_coding	protein_coding	protein_coding	9	97	2	1.55329	1.55929	1.56529	0.058079	0.0363075	0.167723	0.153238
chr18	31915382	31915479	6961119	0	-	0.546392	(0.515,0.57]	chr18	688768	15	INTRON	INTRON	TRAPPC8	ENSG00000153339.15	ENST00000283351.10:ENST00000580104.5:ENST00000582539.5:ENST00000582513.5:ENST00000578658.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	74	2	1.31383	1.55915	1.80447	0.0552039	0.00879341	0.165463	0.084878
chr3	42627812	42627910	1406252	0	+	0.357143	(0.35,0.378]	chr3	147680	7	EXON_MRNA	EXON_MRNA:INTRON	NKTR	ENSG00000114857.19	ENST00000468735.6:ENST00000429888.5:ENST00000232978.13:ENST00000465584.5:ENST00000466553.1:ENST00000498730.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	29	220	2	1.32467	1.55903	1.79339	0.0152939	0.00486976	0.108569	0.0607461
chr19	28510829	28510929	7166203	0	-	0.47	(0.44,0.476]	chr19	724189	426	INTRON	INTRON	ENSG00000283403:ENSG00000267243	ENSG00000283403.1:ENSG00000267243.6	ENST00000592347.5:ENST00000593065.5	lncRNA	lncRNA	lncRNA	lncRNA	9	64	2	1.24474	1.558995	1.87325	0.070785699999999993	0.0265709	0.184528	0.134088
chr22	19501715	19501813	7477060	0	+	0.469388	(0.44,0.476]	chr22	762436	22	INTRON	INTRON	CDC45	ENSG00000093009.11	ENST00000407835.6:ENST00000437685.6:ENST00000438587.6:ENST00000672837.1:ENST00000263201.7:ENST00000404724.7:ENST00000428937.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	20	138	2	1.24999	1.55877	1.86755	0.0299195	0.00715715	0.129138	0.0756118
chr1	205748162	205748262	623870	0	-	0.34	(0.32,0.35]	chr1	74198	170	INTRON	INTRON	NUCKS1	ENSG00000069275.13	ENST00000367142.5	protein_coding	protein_coding	protein_coding	protein_coding	9	78	2	1.43561	1.558745	1.68188	0.0543363	0.031521	0.164972	0.144381
chr13	25305329	25305428	5457201	0	+	0.50505	(0.476,0.515]	chr13	522871	18	INTRON	INTRON	NUP58	ENSG00000139496.17	ENST00000481980.2:ENST00000490231.6:ENST00000695571.1:ENST00000477876.2:ENST00000695572.1:ENST00000463407.6:ENST00000695573.1:ENST00000381736.8:ENST00000695583.1:ENST00000465068.5:ENST00000460326.5:ENST00000480187.5:ENST00000466694.6:ENST00000381718.8:ENST00000695575.1:ENST00000695574.1:ENST00000495460.2:ENST00000381747.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	12	82	2	1.36548	1.5584500000000001	1.75142	0.0323763	0.0259024	0.145026	0.121522
chr2	96889344	96889443	1182118	0	-	0.474747	(0.44,0.476]	chr2	126720	105	INTRON	INTRON	FAM178B	ENSG00000168754.15	ENST00000393526.6:ENST00000490605.3:ENST00000470789.5:ENST00000494172.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	27	189	2	1.30071	1.5582449999999999	1.81578	0.0205687	0.00330163	0.110999	0.0527031
chr16	15072749	15072849	6450220	0	-	0.34	(0.32,0.35]	chr16	621478	4	SS5_PROX	SS5_PROX:INTRON	RRN3	ENSG00000085721.13	ENST00000198767.11:ENST00000563559.5:ENST00000429751.6:ENST00000327307.11	protein_coding	protein_coding	protein_coding	protein_coding	10	88	2	1.42176	1.55819	1.69462	0.0511006	0.0249051	0.176696	0.12011
chr16	212466	212566	6426018	0	-	0.37	(0.35,0.378]	chr16	617437	28	INTRON	INTRON	LUC7L	ENSG00000007392.17	ENST00000337351.8:ENST00000426094.5:ENST00000397783.5:ENST00000629543.2:ENST00000490762.5:ENST00000293872.13:ENST00000419516.5:ENST00000397780.5:ENST00000418978.5:ENST00000430864.5:ENST00000443357.5:ENST00000494366.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	25	183	2	1.11681	1.558035	1.99926	0.0376107	0.0032824	0.156136	0.0509616
chr6	140176279	140176379	2968218	0	+	0.36	(0.35,0.378]	chr6	279015	272	INTRON	INTRON	ENSG00000288714	ENSG00000288714.1	ENST00000683950.1	lncRNA	lncRNA	lncRNA	lncRNA	9	72	2	1.33846	1.5579100000000001	1.77736	0.0687435	0.0225073	0.184298	0.124921
chr8	140516009	140516105	3878365	0	+	0.333333	(0.32,0.35]	chr8	356191	9	UTR3	UTR3:EXON_MRNA	CHRAC1	ENSG00000104472.10	ENST00000519533.1:ENST00000220913.10	protein_coding	protein_coding	protein_coding	protein_coding	9	77	2	1.54135	1.55789	1.57443	0.048436	0.0353776	0.153635	0.150752
chr19	28459351	28459450	7165682	0	-	0.292929	(0.28,0.32]	chr19	724169	19	INTRON	INTRON	ENSG00000283403:ENSG00000267243	ENSG00000283403.1:ENSG00000267243.6	ENST00000592347.5:ENST00000593065.5:ENST00000592716.1:ENST00000591920.5	lncRNA	lncRNA	lncRNA	lncRNA	10	92	2	1.4144	1.55781	1.70122	0.042942	0.0356118	0.162255	0.138061
chr19	9561706	9561804	7132747	0	-	0.510204	(0.476,0.515]	chr19	718804	15	UTR3	UTR3:EXON_MRNA	ZNF121	ENSG00000197961.12	ENST00000320451.7:ENST00000586602.5	protein_coding	protein_coding	protein_coding	protein_coding	30	217	2	1.37512	1.55769	1.74026	0.0141929	0.0032447	0.103638	0.0508523
chr22	20950235	20950332	7480847	0	+	0.412371	(0.408,0.44]	chr22	763101	5	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	CRKL	ENSG00000099942.13	ENST00000354336.8:ENST00000411769.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	16	112	2	1.38149	1.5576500000000002	1.73381	0.0227753	0.0145181	0.125295	0.0977607
chr4	82889498	82889597	2180093	0	-	0.363636	(0.35,0.378]	chr4	214408	72	INTRON	INTRON	SEC31A	ENSG00000138674.17	ENST00000395310.7:ENST00000513858.5:ENST00000348405.8:ENST00000448323.5:ENST00000311785.11:ENST00000509142.5:ENST00000443462.6:ENST00000355196.6:ENST00000508502.5:ENST00000505984.5:ENST00000508479.5:ENST00000436790.6:ENST00000503058.5:ENST00000507816.5:ENST00000514326.5:ENST00000513323.5:ENST00000511975.5:ENST00000507340.5:ENST00000507867.5:ENST00000506497.5:ENST00000510310.1:ENST00000503210.5:ENST00000505434.5:ENST00000507676.5:ENST00000506495.5:ENST00000507051.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	15	118	2	1.46081	1.5575999999999999	1.65439	0.0324753	0.0109592	0.13353	0.0926146
chr19	1426447	1426547	6995291	0	+	0.53	(0.515,0.57]	chr19	693206	2	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	DAZAP1	ENSG00000071626.17	ENST00000336761.10:ENST00000233078.9:ENST00000592522.5:ENST00000586579.5:ENST00000587079.5:ENST00000592453.2:ENST00000589484.5:ENST00000585485.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	13	74	2	1.21055	1.55759	1.90463	0.0465577	0.0141753	0.167092	0.0959618
chr5	54062459	54062559	2618430	0	-	0.38	(0.378,0.408]	chr5	248837	143	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	16	120	2	1.32783	1.557415	1.787	0.0481997	0.00474983	0.153122	0.0635784
chr1	246926644	246926744	681910	0	-	0.48	(0.476,0.515]	chr1	80043	79	INTRON	INTRON	AHCTF1	ENSG00000153207.16	ENST00000648844.2:ENST00000326225.3:ENST00000366508.5	protein_coding	protein_coding	protein_coding	protein_coding	9	65	2	1.50151	1.557375	1.61324	0.054954	0.026684	0.165463	0.134419
chr9	37202439	37202539	4118481	0	+	0.31	(0.28,0.32]	chr9	375389	155	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000461038.5:ENST00000488607.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	17	157	2	1.46695	1.5573299999999999	1.64771	0.0309608	0.0106548	0.13151	0.0916205
chr15	45602056	45602156	6018492	0	+	0.45	(0.44,0.476]	chr15	573558	3	SS3_PROX	SS3_PROX:INTRON	BLOC1S6	ENSG00000104164.12	ENST00000567740.5:ENST00000567461.5:ENST00000568963.5:ENST00000562384.5:ENST00000569076.5:ENST00000568597.5:ENST00000220531.9:ENST00000567523.5:ENST00000566184.1:ENST00000565216.5:ENST00000672455.1:ENST00000564310.2:ENST00000563000.5:ENST00000565323.6:ENST00000566801.5:ENST00000568816.5:ENST00000563160.5:ENST00000565727.5:ENST00000565409.5:ENST00000564765.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	66	2	1.35267	1.55731	1.76195	0.060678	0.0252608	0.192323	0.12011
chr8	67090411	67090510	3776891	0	+	0.565657	(0.515,0.57]	chr8	350279	32	INTRON	INTRON	CSPP1	ENSG00000104218.16	ENST00000676113.1:ENST00000675306.2:ENST00000678156.1:ENST00000262210.11:ENST00000678017.1:ENST00000675869.1:ENST00000678542.1:ENST00000677619.1:ENST00000676605.1:ENST00000676471.1:ENST00000677256.1:ENST00000676847.1:ENST00000677009.1:ENST00000675820.1:ENST00000676317.1:ENST00000677592.1:ENST00000676573.1:ENST00000678318.1:ENST00000677473.1:ENST00000674993.1:ENST00000678553.1:ENST00000678927.1:ENST00000678204.1:ENST00000679226.1:ENST00000676882.1:ENST00000675955.1:ENST00000678728.1:ENST00000677430.1:ENST00000677455.1:ENST00000678616.1:ENST00000678362.1:ENST00000679112.1:ENST00000678645.1:ENST00000676567.1:ENST00000677845.1:ENST00000519701.5:ENST00000519163.6:ENST00000676858.1:ENST00000678747.1:ENST00000678821.1:ENST00000678744.1:ENST00000519668.1:ENST00000677276.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	13	80	2	1.14264	1.5572400000000002	1.97184	0.0774783	0.0041442	0.196285	0.0589266
chr2	152654832	152654930	1245863	0	-	0.397959	(0.378,0.408]	chr2	132235	34	UTR3	UTR3:EXON_MRNA	PRPF40A	ENSG00000196504.20	ENST00000410080.8:ENST00000545856.8	protein_coding	protein_coding	protein_coding	protein_coding	10	75	2	1.26593	1.5571199999999998	1.84831	0.0680071	0.0172621	0.184298	0.111749
chr4	78786605	78786705	1981487	0	+	0.35	(0.32,0.35]	chr4	198463	95	INTRON	INTRON	BMP2K	ENSG00000138756.19	ENST00000389010.7:ENST00000502613.3:ENST00000502871.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	84	2	1.50457	1.55698	1.60939	0.0439266	0.0309203	0.14937	0.143443
chr1	70222502	70222583	142601	0	+	0.246914	[0,0.28]	chr1	15973	3	SS3_PROX	SS3_PROX:INTRON	SRSF11	ENSG00000116754.14	ENST00000370951.5:ENST00000463877.1:ENST00000687381.1:ENST00000370950.7:ENST00000475204.5:ENST00000370949.2:ENST00000395136.7:ENST00000473950.5:ENST00000469170.5:ENST00000486667.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	13	131	2	1.45089	1.5567600000000001	1.66263	0.0436724	0.0254516	0.148885	0.133676
chr3	198206768	198206868	1600231	0	+	0.34	(0.32,0.35]	chr3	165898	74	INTRON	INTRON	FAM157A	ENSG00000236438.7	ENST00000634862.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	10	86	2	1.49732	1.5566149999999999	1.61591	0.0455974	0.0277247	0.149888	0.137011
chr4	176331755	176331853	2083220	0	+	0.5	(0.476,0.515]	chr4	205895	36	UTR3	UTR3:EXON_MRNA	SPCS3	ENSG00000129128.13	ENST00000503362.2	protein_coding	protein_coding	protein_coding	protein_coding	25	177	2	1.47539	1.55645	1.63751	0.0130523	0.00579013	0.093385	0.0684441
chr18	36166696	36166792	6891816	0	+	0.260417	[0,0.28]	chr18	683068	2	SS3_PROX	SS3_PROX:INTRON	ELP2	ENSG00000134759.14	ENST00000351393.10:ENST00000442325.6:ENST00000358232.11:ENST00000423854.6:ENST00000539560.5:ENST00000350494.10:ENST00000542824.5:ENST00000540766.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	16	169	2	1.40728	1.5561	1.70492	0.0555184	0.0084542	0.165463	0.0828633
chr17	82465518	82465616	6692333	0	+	0.5	(0.476,0.515]	chr17	654561	7	INTRON	INTRON	NARF	ENSG00000141562.19	ENST00000579198.5:ENST00000390006.8:ENST00000583181.5:ENST00000584192.5:ENST00000580296.5:ENST00000345415.11:ENST00000581202.5:ENST00000374611.9:ENST00000457415.7:ENST00000581795.5:ENST00000584411.5:ENST00000577812.5:ENST00000581743.5:ENST00000577432.5:ENST00000582907.5:ENST00000309794.16:ENST00000578082.5:ENST00000580748.1:ENST00000577410.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	66	451	2	1.4248	1.55605	1.6873	0.00413561	0.00216602	0.0588546	0.0417866
chr3	9429468	9429568	1359212	0	+	0.37	(0.35,0.378]	chr3	142690	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SETD5	ENSG00000168137.20	ENST00000402198.7:ENST00000431285.5:ENST00000683012.1:ENST00000478475.5:ENST00000415650.5:ENST00000682536.1:ENST00000663774.1:ENST00000665872.1:ENST00000666307.1:ENST00000693430.1:ENST00000691925.1:ENST00000684606.1:ENST00000691175.1:ENST00000688835.1:ENST00000683262.1:ENST00000443339.5:ENST00000406341.5:ENST00000670063.1:ENST00000468208.2:ENST00000691299.1:ENST00000684055.1:ENST00000407969.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	14	111	2	1.50831	1.5560200000000002	1.60373	0.0277212	0.016652900000000002	0.123904	0.110511
chr9	37171425	37171525	4118169	0	+	0.41	(0.408,0.44]	chr9	375384	113	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000322831.6:ENST00000461038.5:ENST00000488607.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	32	221	2	1.40824	1.55593	1.70362	0.00864831	0.00560011	0.0841277	0.0652128
chr1	23031333	23031433	43877	0	+	0.29	(0.28,0.32]	chr1	5258	3	INTRON	INTRON	KDM1A	ENSG00000004487.18	ENST00000692214.1:ENST00000686934.1:ENST00000689853.1:ENST00000465864.2:ENST00000691256.1:ENST00000688122.1:ENST00000692056.1:ENST00000692853.1:ENST00000689366.1:ENST00000686270.1:ENST00000685102.1:ENST00000690627.1:ENST00000686771.1:ENST00000692209.1:ENST00000686339.1:ENST00000691813.1:ENST00000693156.1:ENST00000688235.1:ENST00000692975.1:ENST00000687202.1:ENST00000691682.1:ENST00000691404.1:ENST00000691694.1:ENST00000688680.1:ENST00000356634.7:ENST00000400181.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	81	2	1.50806	1.555745	1.60343	0.0669889	0.0317995	0.183051	0.14477
chr4	70927632	70927732	1970758	0	+	0.51	(0.476,0.515]	chr4	197571	247	INTRON	INTRON	MOB1B	ENSG00000173542.9	ENST00000502869.5:ENST00000509041.5:ENST00000309395.7:ENST00000396051.2:ENST00000511449.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	16	107	2	1.35447	1.5557050000000001	1.75694	0.0225675	0.0175942	0.124921	0.105143
chr3	42627714	42627812	1406251	0	+	0.234694	[0,0.28]	chr3	147680	6	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	NKTR	ENSG00000114857.19	ENST00000468735.6:ENST00000429888.5:ENST00000232978.13:ENST00000465584.5:ENST00000466553.1:ENST00000498730.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	33	341	2	1.50484	1.55567	1.6065	0.0139497	0.00894411	0.0958475	0.0849778
chr4	55405033	55405133	1960681	0	+	0.34	(0.32,0.35]	chr4	196553	13	INTRON	INTRON	TMEM165	ENSG00000134851.13	ENST00000381334.10:ENST00000506198.5:ENST00000508404.5:ENST00000511710.1:ENST00000502797.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	29	204	2	1.16282	1.55559	1.94836	0.0259631	0.00752786	0.133676	0.074841
chr9	92253161	92253261	4286915	0	-	0.29	(0.28,0.32]	chr9	394150	4	SS5_PROX	SS5_PROX:INTRON	IARS1	ENSG00000196305.19	ENST00000375643.7:ENST00000443024.7:ENST00000447699.7:ENST00000683537.1:ENST00000684726.1:ENST00000683192.1:ENST00000683565.1:ENST00000682756.1:ENST00000684542.1:ENST00000683793.1:ENST00000683817.1:ENST00000682141.1:ENST00000682893.1:ENST00000684557.1:ENST00000498025.2:ENST00000682156.1:ENST00000683017.1:ENST00000627121.3:ENST00000683469.1:ENST00000683495.1:ENST00000682578.1:ENST00000682533.1:ENST00000472894.2:ENST00000684757.1:ENST00000684445.1:ENST00000683376.1:ENST00000683679.1:ENST00000683119.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	16	148	2	1.33618	1.5554649999999999	1.77475	0.0465755	0.00755719	0.151522	0.0773151
chr8	9028597	9028696	3695822	0	+	0.373737	(0.35,0.378]	chr8	342937	78	INTRON	INTRON	ERI1	ENSG00000104626.15	ENST00000519292.5:ENST00000250263.8:ENST00000520332.5:ENST00000518663.1:ENST00000522612.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	63	2	1.5118	1.55542	1.59904	0.0789277	0.0285976	0.198963	0.139244
chr15	50364622	50364722	6022137	0	+	0.53	(0.515,0.57]	chr15	573922	98	EXON_LNCRNA	EXON_LNCRNA:INTRON	GABPB1-AS1	ENSG00000244879.9	ENST00000668321.1:ENST00000499624.3:ENST00000648591.1:ENST00000558593.1	lncRNA	lncRNA	lncRNA	lncRNA	19	115	2	1.52694	1.555135	1.58333	0.0119667	0.0116844	0.0962115	0.0899583
chr6	72718427	72718527	2898668	0	+	0.38	(0.378,0.408]	chr6	274190	400	INTRON	INTRON	KCNQ5	ENSG00000185760.18	ENST00000342056.6:ENST00000628967.2:ENST00000692515.1:ENST00000370398.6:ENST00000370392.5:ENST00000629977.2:ENST00000355194.9	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	63	2	1.51701	1.5550899999999999	1.59317	0.0603812	0.0404516	0.19151	0.144865
chr19	3202690	3202784	6999017	0	+	0.457447	(0.44,0.476]	chr19	694112	7	INTRON	INTRON	NCLN	ENSG00000125912.11	ENST00000590671.5:ENST00000246117.9:ENST00000588428.5:ENST00000587740.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	86	2	1.32592	1.555075	1.78423	0.0472287	0.0143065	0.152684	0.104058
chr1	21726090	21726190	396279	0	-	0.48	(0.476,0.515]	chr1	47276	2	SS5_PROX	SS5_PROX:INTRON	USP48	ENSG00000090686.16	ENST00000400301.5:ENST00000308271.14:ENST00000529637.5:ENST00000487880.2:ENST00000526044.5:ENST00000534705.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	25	159	2	1.08262	1.555035	2.02745	0.0394192	0.00310396	0.161534	0.0498063
chr12	56643091	56643178	5335783	0	-	0.37931	(0.378,0.408]	chr12	510128	4	EXON_LNCRNA	EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ATP5F1B	ENSG00000110955.9	ENST00000262030.8:ENST00000548474.2:ENST00000547808.5:ENST00000547250.5:ENST00000551020.5:ENST00000550162.1:ENST00000552959.5:ENST00000551570.5:ENST00000553007.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	37	271	2	1.4052	1.555005	1.70481	0.0161536	0.00168559	0.101453	0.0381778
chr2	38674316	38674415	749879	0	+	0.515152	(0.476,0.515]	chr2	85700	76	INTRON	INTRON	GALM	ENSG00000143891.17	ENST00000427858.4:ENST00000272252.10:ENST00000410063.5:ENST00000444351.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	15	107	2	1.38303	1.554905	1.72678	0.0390231	0.00766467	0.143072	0.0780196
chr11	86067451	86067551	5014827	0	-	0.41	(0.408,0.44]	chr11	473022	355	INTRON	INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000630913.2:ENST00000528398.5:ENST00000356360.9:ENST00000534412.5:ENST00000531558.1:ENST00000531930.5:ENST00000532041.5:ENST00000525162.5:ENST00000528256.1:ENST00000528411.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	32	224	2	1.48946	1.55488	1.6203	0.014064	0.00292895	0.0959618	0.0496066
chr11	47468031	47468130	4949520	0	-	0.272727	[0,0.28]	chr11	464136	22	UTR3	UTR3:EXON_MRNA	CELF1	ENSG00000149187.19	ENST00000310513.10:ENST00000687097.1:ENST00000395290.6	protein_coding	protein_coding	protein_coding	protein_coding	20	204	2	1.48112	1.55485	1.62858	0.0246259	0.0151141	0.12011	0.108513
chr2	26372866	26372966	715283	0	+	0.38	(0.378,0.408]	chr2	82590	1	SS3_PROX	SS3_PROX:INTRON	SELENOI	ENSG00000138018.19	ENST00000442141.5:ENST00000260585.12:ENST00000447170.1	protein_coding	protein_coding	protein_coding	protein_coding	13	94	2	1.52219	1.55484	1.58749	0.0531838	0.0116117	0.162538	0.0962115
chr22	19847714	19847813	7555557	0	-	0.393939	(0.378,0.408]	chr22	772444	17	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	GNB1L:RTL10	ENSG00000185838.14:ENSG00000215012.9	ENST00000329517.11:ENST00000403325.5:ENST00000405009.5:ENST00000460402.5:ENST00000481086.1:ENST00000453108.1:ENST00000407472.5:ENST00000405640.1:ENST00000328554.9:ENST00000484072.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	21	154	2	1.14171	1.55483	1.96795	0.0424329	0.00349186	0.161763	0.0523019
chr21	39304365	39304464	7465450	0	-	0.424242	(0.408,0.44]	chr21	760568	54	INTRON	INTRON	BRWD1	ENSG00000185658.14	ENST00000333229.6:ENST00000342449.8:ENST00000380800.7:ENST00000341322.4:ENST00000470108.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	80	2	1.39614	1.5545149999999999	1.71289	0.0567929	0.0135449	0.167723	0.101363
chr12	124783296	124783393	5445760	0	-	0.556701	(0.515,0.57]	chr12	521219	6	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	SCARB1	ENSG00000073060.17	ENST00000339570.9:ENST00000261693.11:ENST00000679605.1:ENST00000681686.1:ENST00000680926.1:ENST00000680556.1:ENST00000680982.1:ENST00000680596.1:ENST00000681555.1:ENST00000681788.1:ENST00000415380.6:ENST00000681117.1:ENST00000681499.1:ENST00000545305.1:ENST00000538291.5:ENST00000546215.5:ENST00000535005.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	40	236	2	1.30374	1.55425	1.80476	0.0123591	0.00123173	0.0915414	0.0326215
chr17	62056690	62056790	6810795	0	-	0.43	(0.408,0.44]	chr17	672952	36	INTRON	INTRON	MED13	ENSG00000108510.10	ENST00000397786.7	protein_coding	protein_coding	protein_coding	protein_coding	10	69	2	1.46762	1.55412	1.64062	0.0557275	0.0267854	0.165463	0.134871
chr11	47468630	47468730	4949526	0	-	0.31	(0.28,0.32]	chr11	464136	28	UTR3	UTR3:EXON_MRNA	CELF1	ENSG00000149187.19	ENST00000310513.10:ENST00000687097.1:ENST00000395290.6:ENST00000358597.7:ENST00000395292.6	protein_coding	protein_coding	protein_coding	protein_coding	28	254	2	1.5106	1.55397	1.59734	0.0174058	0.00608489	0.104462	0.0705145
chrX	119470958	119471058	7712410	0	+	0.42	(0.408,0.44]	chrX	789200	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	SLC25A5	ENSG00000005022.6	ENST00000317881.9:ENST00000463551.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	19	137	2	1.45747	1.55397	1.65047	0.0198961	0.00868029	0.109608	0.0842798
chr1	108962870	108962964	519175	0	-	0.265957	[0,0.28]	chr1	60936	7	UTR5	UTR5:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CLCC1	ENSG00000121940.17	ENST00000690509.1:ENST00000687328.1:ENST00000685014.1:ENST00000685540.1:ENST00000686576.1:ENST00000688070.1:ENST00000691513.1:ENST00000686821.1:ENST00000692511.1:ENST00000689479.1:ENST00000687646.1:ENST00000687998.1:ENST00000687226.1:ENST00000693336.1:ENST00000689991.1:ENST00000687591.1:ENST00000691777.1:ENST00000690756.1:ENST00000688778.1:ENST00000685104.1:ENST00000689103.1:ENST00000687734.1:ENST00000686434.1:ENST00000685497.1:ENST00000691342.1:ENST00000686776.1:ENST00000692342.1:ENST00000689351.1:ENST00000692584.1:ENST00000692775.1:ENST00000675018.1:ENST00000690781.1:ENST00000691556.1:ENST00000689189.1:ENST00000687099.1:ENST00000685791.1:ENST00000687865.1:ENST00000687449.1:ENST00000688285.1:ENST00000369968.7:ENST00000674992.1:ENST00000675001.1:ENST00000369969.7:ENST00000356970.6:ENST00000688610.1:ENST00000675128.1:ENST00000693089.1:ENST00000675571.1:ENST00000675650.1:ENST00000369970.8:ENST00000675654.1:ENST00000675790.1:ENST00000675584.1:ENST00000692795.1:ENST00000691731.1:ENST00000689359.1:ENST00000676392.2:ENST00000676391.2:ENST00000676454.1:ENST00000674849.1:ENST00000675956.1:ENST00000302500.5:ENST00000675508.1:ENST00000688168.1:ENST00000693673.1:ENST00000692404.1:ENST00000686078.1:ENST00000690874.1:ENST00000692732.1:ENST00000685628.1:ENST00000676306.1:ENST00000676059.2:ENST00000674527.1:ENST00000691876.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	21	223	2	1.37484	1.553785	1.73273	0.0353091	0.00753474	0.137535	0.0773151
chr17	32869908	32870008	6757044	0	-	0.39	(0.378,0.408]	chr17	664079	70	INTRON	INTRON	MYO1D	ENSG00000176658.17	ENST00000318217.10:ENST00000579584.5:ENST00000583621.1	protein_coding	protein_coding	protein_coding	protein_coding	12	90	2	1.37524	1.553725	1.73221	0.0610755	0.00963227	0.172411	0.086971
chr7	158820549	158820648	3689724	0	-	0.454545	(0.44,0.476]	chr7	342421	211	INTRON	INTRON	ESYT2	ENSG00000117868.18	ENST00000251527.10:ENST00000275418.13:ENST00000652148.1:ENST00000483958.5:ENST00000497111.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	17	120	2	1.32793	1.5537	1.77947	0.0279938	0.00926895	0.137011	0.0817766
chr12	132648486	132648545	5448752	0	-	0.220339	[0,0.28]	chr12	521730	2	SS5_PROX	SS5_PROX:INTRON	POLE	ENSG00000177084.18	ENST00000320574.10:ENST00000672742.1:ENST00000672002.1:ENST00000537064.5:ENST00000535270.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	87	2	1.46548	1.55363	1.64178	0.0721311	0.0390996	0.187433	0.161325
chr18	792742	792841	6940510	0	-	0.323232	(0.32,0.35]	chr18	686525	44	INTRON	INTRON	YES1	ENSG00000176105.14	ENST00000584307.5:ENST00000314574.5:ENST00000577611.1:ENST00000581960.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	105	2	1.11783	1.55346	1.98909	0.0752351	0.0108865	0.193891	0.0923273
chr2	27590990	27591090	718013	0	+	0.33	(0.32,0.35]	chr2	83352	69	INTRON	INTRON	ZNF512	ENSG00000243943.10	ENST00000413371.6:ENST00000416005.6:ENST00000556601.5:ENST00000379717.5:ENST00000355467.6:ENST00000494548.1:ENST00000461705.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	16	137	2	1.26579	1.55341	1.84103	0.0419833	0.0088497	0.161744	0.0794545
chr4	70978131	70978230	1971268	0	+	0.30303	(0.28,0.32]	chr4	197601	15	INTRON	INTRON	MOB1B	ENSG00000173542.9	ENST00000309395.7:ENST00000396051.2:ENST00000511449.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	100	2	1.51187	1.55286	1.59385	0.0598267	0.0190086	0.169278	0.118802
chr5	57175923	57176018	2358074	0	+	0.315789	(0.28,0.32]	chr5	227559	6	UTR5	UTR5:EXON_MRNA	GPBP1	ENSG00000062194.16	ENST00000424459.7:ENST00000514387.6:ENST00000506184.7:ENST00000511209.5	protein_coding	protein_coding	protein_coding	protein_coding	18	166	2	1.28334	1.55283	1.82232	0.0490002	0.00504065	0.155141	0.0646039
chr1	190692	190791	353123	0	-	0.454545	(0.44,0.476]	chr1	40882	14	INTRON	INTRON	WASH9P	ENSG00000279457.4	ENST00000623083.4	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	9	62	2	1.29261	1.5527199999999999	1.81283	0.0583425	0.0343005	0.189184	0.135641
chr13	45360654	45360739	5480138	0	+	0.447059	(0.44,0.476]	chr13	525027	3	SS5_PROX	SS5_PROX:INTRON	TPT1-AS1	ENSG00000170919.16	ENST00000517509.5:ENST00000658870.1:ENST00000653307.1:ENST00000661180.1:ENST00000655984.1:ENST00000654229.1:ENST00000519454.6:ENST00000412946.6:ENST00000665586.1:ENST00000520590.5:ENST00000521336.6:ENST00000655666.1:ENST00000669281.1:ENST00000520622.6:ENST00000657761.1:ENST00000668209.1:ENST00000659577.1:ENST00000523506.6:ENST00000661291.1:ENST00000655385.1:ENST00000652823.1:ENST00000524062.5:ENST00000655124.1:ENST00000662212.1:ENST00000522859.5:ENST00000664881.1:ENST00000669627.1:ENST00000520924.5:ENST00000521507.5:ENST00000523445.5:ENST00000520310.6:ENST00000667948.1:ENST00000668256.1:ENST00000654626.1:ENST00000660680.1:ENST00000665079.1:ENST00000662614.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	9	62	2	1.29261	1.5527199999999999	1.81283	0.0583425	0.0343005	0.189184	0.135641
chr5	171390521	171390619	2546592	0	+	0.336735	(0.32,0.35]	chr5	243084	5	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	NPM1	ENSG00000181163.14	ENST00000517671.5:ENST00000676613.1:ENST00000678186.1:ENST00000678267.1:ENST00000677297.1:ENST00000521672.6:ENST00000679190.1:ENST00000677467.1:ENST00000678280.1:ENST00000676625.1:ENST00000679006.1:ENST00000351986.10:ENST00000676504.1:ENST00000676589.1:ENST00000677357.1:ENST00000679233.1:ENST00000296930.10:ENST00000393820.2:ENST00000521260.2:ENST00000518587.2:ENST00000678774.1:ENST00000521710.2:ENST00000677600.1:ENST00000677741.1:ENST00000523622.1:ENST00000677325.1:ENST00000677672.1:ENST00000677907.1:ENST00000677904.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	109	2	1.32333	1.55267	1.78201	0.0365661	0.0365003	0.153759	0.138959
chr2	46625218	46625317	770567	0	+	0.434343	(0.408,0.44]	chr2	86971	11	UTR3	UTR3:EXON_MRNA	CRIPT	ENSG00000119878.6	ENST00000238892.4	protein_coding	protein_coding	protein_coding	protein_coding	13	93	2	1.28254	1.552645	1.82275	0.047205	0.0123226	0.152612	0.097243
chr11	65443043	65443143	4805973	0	+	0.45	(0.44,0.476]	chr11	446554	204	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	77	530	2	1.52423	1.55243	1.58063	0.00454066	0.001463	0.0595107	0.0350432
chr2	38593438	38593538	1099683	0	-	0.33	(0.32,0.35]	chr2	117957	14	INTRON	INTRON	HNRNPLL	ENSG00000143889.16	ENST00000449105.8:ENST00000409636.5:ENST00000358367.8:ENST00000608859.5:ENST00000378915.7:ENST00000409328.5:ENST00000410076.5:ENST00000425682.1:ENST00000498516.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	60	2	1.54741	1.5521150000000001	1.55682	0.0724487	0.0473733	0.188101	0.169265
chr6	149659443	149659542	3246141	0	-	0.353535	(0.35,0.378]	chr6	301609	14	UTR3	UTR3:EXON_MRNA	LATS1	ENSG00000131023.13	ENST00000543571.6	protein_coding	protein_coding	protein_coding	protein_coding	20	152	2	1.19387	1.552055	1.91024	0.0422443	0.00458484	0.148082	0.0622822
chr20	50087343	50087443	7353695	0	-	0.44	(0.408,0.44]	chr20	749863	27	INTRON	INTRON	UBE2V1	ENSG00000244687.13	ENST00000340309.7:ENST00000371677.7:ENST00000415862.6:ENST00000557021.5:ENST00000617119.4:ENST00000625172.3:ENST00000396059.7:ENST00000371674.8:ENST00000371657.9:ENST00000483534.5:ENST00000492371.6:ENST00000486653.5:ENST00000490555.1:ENST00000493090.5:ENST00000467839.5:ENST00000472923.5:ENST00000432266.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	15	108	2	1.35953	1.5516	1.74367	0.0367385	0.00902611	0.138959	0.0851577
chr10	70746684	70746782	4448079	0	+	0.408163	(0.378,0.408]	chr10	410442	10	INTRON	INTRON	ADAMTS14	ENSG00000138316.11	ENST00000373207.2:ENST00000373208.5	protein_coding	protein_coding	protein_coding	protein_coding	13	97	2	1.45545	1.5515349999999999	1.64762	0.0387769	0.0136375	0.143072	0.101785
chr1	54380487	54380587	463502	0	-	0.48	(0.476,0.515]	chr1	55784	238	INTRON	INTRON	SSBP3	ENSG00000157216.16	ENST00000610401.5:ENST00000357475.9:ENST00000371319.8:ENST00000417664.7:ENST00000533946.6:ENST00000371320.8:ENST00000525990.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	14	100	2	1.52127	1.551375	1.58148	0.0243835	0.0175606	0.12011	0.11319
chr15	92914279	92914378	6103833	0	+	0.323232	(0.32,0.35]	chr15	581401	53	INTRON	INTRON	ENSG00000279765:CHD2	ENSG00000279765.3:ENSG00000173575.22	ENST00000629685.2:ENST00000630790.1:ENST00000626874.2:ENST00000394196.9:ENST00000635856.1:ENST00000420239.7:ENST00000628375.2:ENST00000625990.3:ENST00000626782.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	60	2	1.49965	1.55131	1.60297	0.0647328	0.0542985	0.182243	0.179192
chr11	85999657	85999754	5014130	0	-	0.412371	(0.408,0.44]	chr11	472953	24	INTRON	INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000630913.2:ENST00000529760.5:ENST00000528398.5:ENST00000356360.9:ENST00000529016.5:ENST00000530542.1	protein_coding	protein_coding	protein_coding	protein_coding	11	80	2	1.4609	1.551285	1.64167	0.0340889	0.0266976	0.146815	0.123349
chrX	151973693	151973787	7908631	0	-	0.553191	(0.515,0.57]	chrX	804816	12	INTRON	INTRON	GABRE	ENSG00000102287.19	ENST00000370328.4:ENST00000441219.5:ENST00000417300.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	36	208	2	1.11499	1.5511599999999999	1.98733	0.0261334	8.41578e-4	0.133676	0.0267031
chr1	51401934	51402034	453162	0	-	0.53	(0.515,0.57]	chr1	54336	1	SS5_PROX	SS5_PROX:INTRON	EPS15	ENSG00000085832.17	ENST00000371733.8:ENST00000371730.6:ENST00000486505.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	12	73	2	1.36683	1.5510899999999999	1.73535	0.0386314	0.0165373	0.142701	0.110511
chr1	70228727	70228809	142667	0	+	0.243902	[0,0.28]	chr1	15985	1	SS5_PROX	SS5_PROX:INTRON	SRSF11	ENSG00000116754.14	ENST00000370951.5:ENST00000687381.1:ENST00000370950.7:ENST00000475204.5:ENST00000370949.2:ENST00000395136.7:ENST00000473950.5:ENST00000469170.5:ENST00000486667.5:ENST00000481648.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	15	157	2	1.50993	1.55105	1.59217	0.0417535	0.0151982	0.147075	0.108535
chr2	65108004	65108104	1142741	0	-	0.41	(0.408,0.44]	chr2	122186	28	INTRON	INTRON	RAB1A	ENSG00000138069.18	ENST00000649427.1:ENST00000494188.1:ENST00000409784.8:ENST00000409892.5:ENST00000409751.1:ENST00000398529.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	14	102	2	1.31757	1.5509849999999998	1.7844	0.0705974	0.00469422	0.184528	0.0631419
chr11	86032210	86032310	5014474	0	-	0.27	[0,0.28]	chr11	473022	2	INTRON	INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000630913.2:ENST00000528398.5:ENST00000356360.9:ENST00000534412.5:ENST00000531558.1:ENST00000531930.5:ENST00000532041.5:ENST00000525162.5:ENST00000528256.1:ENST00000528411.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	18	186	2	1.46974	1.5508350000000002	1.63193	0.0467693	0.00900355	0.151869	0.0851009
chr3	177165998	177166098	1872133	0	-	0.56	(0.515,0.57]	chr3	187434	16	INTRON	INTRON	TBL1XR1	ENSG00000177565.18	ENST00000457928.7:ENST00000430069.5:ENST00000673974.1:ENST00000352800.10:ENST00000422442.6:ENST00000428970.5:ENST00000424913.5:ENST00000437738.5:ENST00000431421.5:ENST00000635794.1:ENST00000630796.2:ENST00000450267.5:ENST00000630833.2:ENST00000431674.5:ENST00000422066.5:ENST00000443315.5:ENST00000627825.2:ENST00000427349.5:ENST00000413084.5:ENST00000637137.1:ENST00000491623.2:ENST00000637544.1:ENST00000636187.1:ENST00000636912.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	13	79	2	1.50809	1.550835	1.59358	0.0294196	0.0158706	0.128055	0.109464
chr15	63225777	63225877	6041119	0	+	0.3	(0.28,0.32]	chr15	575244	14	INTRON	INTRON	RAB8B	ENSG00000166128.13	ENST00000558990.5:ENST00000558119.5:ENST00000559927.1:ENST00000321437.9:ENST00000559006.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	73	2	1.45717	1.550745	1.64432	0.0606133	0.0472947	0.171142	0.16913
chr12	54233917	54234016	5330427	0	-	0.585859	(0.57,1]	chr12	508602	31	UTR3	UTR3:EXON_MRNA	CBX5	ENSG00000094916.16	ENST00000209875.9	protein_coding	protein_coding	protein_coding	protein_coding	12	42	2	1.30159	1.550685	1.79978	0.0400049	0.0199509	0.161534	0.109608
chr6	17658970	17659069	3065723	0	-	0.474747	(0.44,0.476]	chr6	284824	67	INTRON	INTRON	NUP153	ENSG00000124789.12	ENST00000613258.4:ENST00000537253.5:ENST00000262077.3	protein_coding	protein_coding	protein_coding	protein_coding	14	91	2	1.09971	1.55068	2.00165	0.0621447	0.0109867	0.194474	0.0873897
chr6	57050473	57050573	2877966	0	+	0.45	(0.44,0.476]	chr6	273198	3	SS3_PROX	SS3_PROX:INTRON	KIAA1586	ENSG00000168116.14	ENST00000545356.5:ENST00000370733.5:ENST00000488682.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	62	2	1.33609	1.550595	1.7651	0.0510862	0.039388	0.176696	0.143072
chr21	44873216	44873308	7469124	0	-	0.663043	(0.57,1]	chr21	761255	3	SS5_PROX	SS5_PROX:INTRON	PTTG1IP	ENSG00000183255.12	ENST00000397887.7:ENST00000445724.3:ENST00000330938.8:ENST00000480234.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	37	2	1.17344	1.5505	1.92756	0.0618602	0.0220439	0.193604	0.115395
chr11	2989862	2989953	4891976	0	-	0.373626	(0.35,0.378]	chr11	458377	2	INTRON	INTRON	NAP1L4	ENSG00000205531.13	ENST00000620138.4:ENST00000380542.9:ENST00000526115.5:ENST00000532325.6:ENST00000448187.5:ENST00000399614.6:ENST00000430811.5:ENST00000529361.5:ENST00000528968.5:ENST00000526842.5:ENST00000531291.5:ENST00000534372.1	protein_coding	protein_coding	protein_coding	protein_coding	11	84	2	1.28674	1.5504799999999999	1.81422	0.050599	0.0226581	0.17547	0.117618
chr16	21440247	21440347	6460717	0	-	0.46	(0.44,0.476]	chr16	623223	2	SS5_PROX	SS5_PROX:INTRON	NPIPB3	ENSG00000169246.16	ENST00000521589.5:ENST00000545358.5:ENST00000543368.1:ENST00000544154.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	13	91	2	1.50031	1.5503200000000001	1.60033	0.030306	0.0195301	0.130104	0.120063
chr5	146140460	146140560	2746965	0	-	0.46	(0.44,0.476]	chr5	258805	3	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	LARS1	ENSG00000133706.19	ENST00000674174.1:ENST00000674170.1:ENST00000674479.1:ENST00000674309.1:ENST00000674218.1:ENST00000674467.1:ENST00000674290.1:ENST00000674447.1:ENST00000674270.1:ENST00000674383.1:ENST00000674191.1:ENST00000674158.1:ENST00000506231.6:ENST00000674471.1:ENST00000674181.1:ENST00000394434.7:ENST00000674398.1:ENST00000674277.1:ENST00000274562.13:ENST00000510191.5:ENST00000504323.6:ENST00000674310.1:ENST00000512412.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	19	126	2	1.08606	1.5501999999999998	2.01434	0.0511843	0.00461697	0.176696	0.0598455
chrX	48577562	48577662	7658531	0	+	0.3	(0.28,0.32]	chrX	783806	5	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	RBM3	ENSG00000102317.18	ENST00000376759.8:ENST00000466764.5:ENST00000489344.5:ENST00000376755.1:ENST00000354480.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	43	394	2	1.45527	1.55002	1.64477	0.0079949	0.00628725	0.0800421	0.0687424
chr6	147222357	147222457	2988887	0	+	0.46	(0.44,0.476]	chr6	280001	159	INTRON	INTRON	STXBP5	ENSG00000164506.15	ENST00000321680.11:ENST00000367481.7:ENST00000546097.5:ENST00000367480.7	protein_coding	protein_coding	protein_coding	protein_coding	12	88	2	1.41932	1.54979	1.68026	0.0391653	0.0174736	0.161534	0.10482
chr9	130731954	130732054	4214044	0	+	0.28	[0,0.28]	chr9	386427	171	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000393293.4	protein_coding	protein_coding	protein_coding	protein_coding	21	223	2	1.37813	1.54949	1.72085	0.0325802	0.00919047	0.133687	0.0855292
chr9	97996766	97996865	4173174	0	+	0.464646	(0.44,0.476]	chr9	380275	16	INTRON	INTRON	ANP32B	ENSG00000136938.9	ENST00000339399.5:ENST00000473205.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	58	2	1.34221	1.54924	1.75627	0.0656882	0.0380723	0.181162	0.157702
chrX	24752082	24752181	7632297	0	+	0.343434	(0.32,0.35]	chrX	781725	27	INTRON	INTRON	POLA1	ENSG00000101868.13	ENST00000672178.1:ENST00000379068.8:ENST00000379059.7:ENST00000611764.2:ENST00000480125.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	85	2	1.33306	1.549045	1.76503	0.0593533	0.0240772	0.168806	0.129859
chr3	138831898	138831998	1831472	0	-	0.46	(0.44,0.476]	chr3	184062	350	INTRON	INTRON	PIK3CB	ENSG00000051382.9	ENST00000674063.1:ENST00000477593.5:ENST00000462898.5:ENST00000483968.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	65	2	1.30125	1.548875	1.7965	0.0734119	0.0205549	0.190171	0.122348
chr6	7108464	7108564	2798369	0	+	0.66	(0.57,1]	chr6	263718	4	SS5_PROX	SS5_PROX:INTRON	RREB1	ENSG00000124782.21	ENST00000379933.7:ENST00000491191.5:ENST00000471433.5:ENST00000379938.7:ENST00000467782.5:ENST00000349384.10:ENST00000334984.10	protein_coding	protein_coding	protein_coding	protein_coding	10	37	2	1.46969	1.54861	1.62753	0.0586892	0.0184812	0.167915	0.116694
chr12	122508950	122509047	5442060	0	-	0.28866000000000003	(0.28,0.32]	chr12	520545	1	INTRON	INTRON	RSRC2	ENSG00000111011.18	ENST00000331738.12:ENST00000532695.5:ENST00000433877.6:ENST00000527173.6:ENST00000392442.6:ENST00000525335.6:ENST00000344591.8:ENST00000528263.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	86	2	1.26409	1.54856	1.83303	0.0570949	0.0370023	0.186331	0.139194
chr5	136179066	136179165	2493306	0	+	0.363636	(0.35,0.378]	chr5	238185	17	UTR3	UTR3:EXON_MRNA:INTRON	SMAD5	ENSG00000113658.18	ENST00000545279.6:ENST00000545620.5:ENST00000513418.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	52	2	1.34146	1.548535	1.75561	0.0739399	0.0634598	0.19806000000000001	0.190914
chr7	128581689	128581789	3407865	0	+	0.39	(0.378,0.408]	chr7	318358	12	INTRON	INTRON	ENSG00000280828:ENSG00000242588	ENSG00000280828.1:ENSG00000242588.6	ENST00000479267.2:ENST00000605862.5	lncRNA	lncRNA	lncRNA:unprocessed_pseudogene	lncRNA:unprocessed_pseudogene	8	59	2	1.36527	1.5484550000000001	1.73164	0.0587392	0.0441773	0.189982	0.149888
chr11	86048583	86048682	5014638	0	-	0.50505	(0.476,0.515]	chr11	473022	166	INTRON	INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000630913.2:ENST00000528398.5:ENST00000356360.9:ENST00000534412.5:ENST00000531558.1:ENST00000531930.5:ENST00000532041.5:ENST00000525162.5:ENST00000528256.1:ENST00000528411.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	20	131	2	1.3104	1.54837	1.78634	0.0202696	0.0115559	0.12144	0.0889104
chr11	57816504	57816602	4793709	0	+	0.418367	(0.408,0.44]	chr11	443826	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ENSG00000288534:CTNND1	ENSG00000288534.1:ENSG00000198561.16	ENST00000673781.1:ENST00000673810.1:ENST00000674116.1:ENST00000674060.1:ENST00000524630.5:ENST00000529919.5:ENST00000682741.1:ENST00000358694.10:ENST00000361332.8:ENST00000361391.10:ENST00000361796.9:ENST00000415361.6:ENST00000426142.6:ENST00000428599.6:ENST00000525902.5:ENST00000526357.5:ENST00000526772.5:ENST00000527467.5:ENST00000528232.5:ENST00000528621.5:ENST00000529526.5:ENST00000529873.5:ENST00000529986.5:ENST00000530094.5:ENST00000530748.5:ENST00000531014.5:ENST00000532245.5:ENST00000532463.5:ENST00000532649.5:ENST00000532787.5:ENST00000532844.5:ENST00000533667.5:ENST00000534579.5:ENST00000399050.10:ENST00000526938.5:ENST00000531007.2:ENST00000674015.1:ENST00000673826.1:ENST00000673683.1:ENST00000674106.1:ENST00000681984.1:ENST00000683906.1:ENST00000673661.1:ENST00000682621.1:ENST00000683201.1:ENST00000682974.1:ENST00000684035.1:ENST00000683510.1:ENST00000683769.1:ENST00000684704.1:ENST00000525821.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	13	87	2	1.21721	1.548265	1.87932	0.0469239	0.0172104	0.167993	0.104099
chr20	32782890	32782987	7256861	0	+	0.319588	(0.28,0.32]	chr20	737132	11	INTRON	INTRON	DNMT3B	ENSG00000088305.19	ENST00000696232.1:ENST00000328111.6:ENST00000696231.1:ENST00000348286.6:ENST00000353855.6:ENST00000696233.1:ENST00000443239.7:ENST00000696234.1:ENST00000696235.1:ENST00000456297.6:ENST00000696236.1:ENST00000696237.1:ENST00000201963.3:ENST00000696238.1:ENST00000696239.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	16	138	2	1.38437	1.54803	1.71169	0.0253232	0.0231638	0.127036	0.12011
chr1	29172007	29172106	410345	0	-	0.272727	[0,0.28]	chr1	49420	35	EXON_MRNA	EXON_MRNA:INTRON	SRSF4	ENSG00000116350.18	ENST00000373795.7:ENST00000691479.1:ENST00000634348.1:ENST00000466448.4:ENST00000605204.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	15	159	2	1.38987	1.54791	1.70595	0.0502717	0.0115537	0.156383	0.0962115
chr1	167944127	167944226	248563	0	+	0.383838	(0.378,0.408]	chr1	29536	65	INTRON	INTRON	DCAF6	ENSG00000143164.16	ENST00000450548.5:ENST00000470919.5:ENST00000432587.6:ENST00000367843.7:ENST00000470721.5:ENST00000367840.4:ENST00000312263.10:ENST00000455334.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	53	2	1.53052	1.54791	1.5653	0.0744544	0.043739	0.192012	0.162255
chr3	196060842	196060937	1897324	0	-	0.452632	(0.44,0.476]	chr3	189919	2	INTRON	INTRON	TFRC	ENSG00000072274.13	ENST00000420415.5:ENST00000360110.9:ENST00000392396.7:ENST00000475593.5:ENST00000465288.5:ENST00000477148.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	19	133	2	1.48076	1.547905	1.61505	0.0144293	0.0133376	0.100676	0.0971833
chr16	22493021	22493121	6322535	0	+	0.4	(0.378,0.408]	chr16	605439	8	INTRON	INTRON	NPIPB5	ENSG00000243716.11	ENST00000415654.5:ENST00000415833.6:ENST00000546168.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	61	2	1.37524	1.5478450000000001	1.72045	0.0610755	0.0424671	0.172411	0.161763
chr20	50751868	50751966	7286880	0	+	0.44898	(0.44,0.476]	chr20	741306	15	UTR3	UTR3:EXON_MRNA:INTRON	PARD6B	ENSG00000124171.9	ENST00000371610.7:ENST00000396039.1	protein_coding	protein_coding	protein_coding	protein_coding	15	111	2	1.21196	1.547835	1.88371	0.0542558	0.00600541	0.182243	0.0674604
chr13	19729339	19729438	5552404	0	-	0.484848	(0.476,0.515]	chr13	530696	194	INTRON	INTRON	PSPC1	ENSG00000121390.19	ENST00000471658.5:ENST00000492741.5:ENST00000635562.1:ENST00000338910.9:ENST00000619300.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	76	2	1.23367	1.547745	1.86182	0.0587374	0.0178986	0.189982	0.106365
chr11	77617481	77617577	4994129	0	-	0.458333	(0.44,0.476]	chr11	471902	4	INTRON	INTRON	CLNS1A	ENSG00000074201.9	ENST00000526761.5:ENST00000525428.6:ENST00000525064.5:ENST00000263309.7:ENST00000526009.5:ENST00000532069.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	28	200	2	1.1918	1.547725	1.90365	0.028413	0.00210626	0.138381	0.0414989
chr1	193172090	193172190	285122	0	+	0.46	(0.44,0.476]	chr1	32819	105	INTRON	INTRON	CDC73	ENSG00000134371.14	ENST00000649895.1:ENST00000643006.1:ENST00000367435.5:ENST00000650197.1:ENST00000648071.1:ENST00000635846.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	12	87	2	1.49801	1.54769	1.59737	0.0300375	0.0234794	0.142135	0.118716
chr16	69629878	69629977	6380650	0	+	0.444444	(0.44,0.476]	chr16	613173	30	INTRON	INTRON	NFAT5	ENSG00000102908.22	ENST00000426654.6:ENST00000349945.7:ENST00000354436.6:ENST00000627621.3:ENST00000650987.1:ENST00000567990.5:ENST00000567239.5:ENST00000393742.7:ENST00000565301.2:ENST00000566899.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	87	2	1.49801	1.54769	1.59737	0.0300375	0.0234794	0.142135	0.118716
chr5	146140560	146140660	2746966	0	-	0.52	(0.515,0.57]	chr5	258805	4	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	LARS1	ENSG00000133706.19	ENST00000674174.1:ENST00000674170.1:ENST00000674479.1:ENST00000674309.1:ENST00000674218.1:ENST00000674467.1:ENST00000674290.1:ENST00000674447.1:ENST00000674270.1:ENST00000674383.1:ENST00000674191.1:ENST00000674158.1:ENST00000506231.6:ENST00000674471.1:ENST00000674181.1:ENST00000394434.7:ENST00000674398.1:ENST00000674277.1:ENST00000274562.13:ENST00000510191.5:ENST00000504323.6:ENST00000674310.1:ENST00000512412.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	12	71	2	1.24949	1.5473	1.84511	0.0486249	0.0167182	0.153975	0.110511
chr19	15310941	15311041	7147190	0	-	0.52	(0.515,0.57]	chr19	721965	306	INTRON	INTRON	BRD4	ENSG00000141867.19	ENST00000679869.1:ENST00000360016.9:ENST00000594841.5:ENST00000597315.5:ENST00000601941.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	41	2	1.38719	1.547295	1.7074	0.0779432	0.0540435	0.196685	0.181713
chr16	81462509	81462609	6405174	0	+	0.41	(0.408,0.44]	chr16	615026	166	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8	protein_coding	protein_coding	protein_coding	protein_coding	13	94	2	1.41479	1.547135	1.67948	0.0358053	0.0154364	0.138791	0.108739
chr10	101785589	101785685	4680627	0	-	0.270833	[0,0.28]	chr10	431933	13	UTR3	UTR3:EXON_MRNA	OGA	ENSG00000198408.14	ENST00000439817.5:ENST00000361464.8	protein_coding	protein_coding	protein_coding	protein_coding	46	424	2	1.00717	1.5470899999999999	2.08701	0.0463743	0.00229378	0.166442	0.0428247
chr6	147242961	147243060	2989095	0	+	0.282828	(0.28,0.32]	chr6	280013	33	INTRON	INTRON	STXBP5	ENSG00000164506.15	ENST00000321680.11:ENST00000367481.7:ENST00000546097.5:ENST00000367480.7	protein_coding	protein_coding	protein_coding	protein_coding	11	102	2	1.33496	1.546795	1.75863	0.0618816	0.0177071	0.174514	0.11319
chr8	23567198	23567294	3715483	0	+	0.458333	(0.44,0.476]	chr8	345233	5	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	SLC25A37	ENSG00000147454.14	ENST00000519973.6:ENST00000290075.10:ENST00000417331.6:ENST00000518881.5:ENST00000520654.1:ENST00000523930.1:ENST00000523883.5:ENST00000522164.5:ENST00000521637.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	114	786	2	1.54289	1.54654	1.55019	0.00289761	0.00139283	0.0477651	0.0341266
chr1	247131057	247131157	683458	0	-	0.34	(0.32,0.35]	chr1	80146	68	INTRON	INTRON	ZNF124	ENSG00000196418.13	ENST00000472531.5:ENST00000476312.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	75	2	1.27967	1.546475	1.81328	0.0615716	0.0591737	0.193423	0.168318
chr3	152327818	152327918	1535577	0	+	0.33	(0.32,0.35]	chr3	159996	255	INTRON	INTRON	MBNL1	ENSG00000152601.18	ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000495875.6:ENST00000324210.10:ENST00000493459.5:ENST00000459747.1:ENST00000460591.5:ENST00000545754.5:ENST00000357472.7:ENST00000324196.9:ENST00000498502.5:ENST00000463374.5:ENST00000485910.5:ENST00000465907.6:ENST00000492948.5:ENST00000485509.5:ENST00000464596.5	protein_coding	protein_coding	protein_coding	protein_coding	26	217	2	1.25068	1.546465	1.84225	0.0368989	0.002177	0.139184	0.0435144
chr19	48875093	48875179	7087757	0	+	0.453488	(0.44,0.476]	chr19	709320	1	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PPP1R15A	ENSG00000087074.8	ENST00000200453.6:ENST00000600406.1	protein_coding	protein_coding	protein_coding	protein_coding	11	79	2	1.4592	1.546455	1.63371	0.0342963	0.0271664	0.147255	0.123904
chr2	156180890	156180990	1248238	0	-	0.42	(0.408,0.44]	chr2	132415	299	INTRON	INTRON	LINC01876	ENSG00000226383.7	ENST00000635799.1:ENST00000662073.1:ENST00000659502.1:ENST00000428651.2:ENST00000661513.1:ENST00000657334.1:ENST00000638047.1:ENST00000637554.1:ENST00000636956.1:ENST00000637665.1:ENST00000637476.1:ENST00000637324.1	lncRNA	lncRNA	lncRNA	lncRNA	9	67	2	1.54151	1.5459299999999998	1.55035	0.0455214	0.0368312	0.164236	0.138959
chr6	35469529	35469629	2853030	0	+	0.5	(0.476,0.515]	chr6	269598	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	RPL10A	ENSG00000198755.11	ENST00000322203.7:ENST00000467020.5:ENST00000464112.5:ENST00000478340.2:ENST00000490335.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	18	127	2	1.36594	1.545855	1.72577	0.0243143	0.00908972	0.131016	0.0809374
chr22	23186418	23186517	7483262	0	+	0.383838	(0.378,0.408]	chr22	763531	38	INTRON	INTRON	BCR	ENSG00000186716.21	ENST00000479188.5:ENST00000359540.7:ENST00000305877.13	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	21	152	2	1.20426	1.5458	1.88734	0.0393085	0.00371027	0.143072	0.0561833
chr19	34379964	34380062	7052640	0	+	0.397959	(0.378,0.408]	chr19	703393	2	SS5_PROX	SS5_PROX:INTRON	GPI	ENSG00000105220.17	ENST00000415930.8:ENST00000588991.7:ENST00000356487.11:ENST00000647446.1:ENST00000586425.2:ENST00000643067.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	13	97	2	1.33191	1.54562	1.75933	0.0563621	0.00858544	0.166677	0.083729
chr19	34432847	34432947	7053166	0	+	0.49	(0.476,0.515]	chr19	703500	1	SS3_PROX	SS3_PROX:INTRON	UBA2	ENSG00000126261.13	ENST00000607361.5:ENST00000586313.1:ENST00000590048.6:ENST00000246548.9:ENST00000439527.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	15	106	2	1.54352	1.545455	1.54739	0.0222105	0.0165511	0.116092	0.110511
chr11	3385168	3385268	4722881	0	+	0.44	(0.408,0.44]	chr11	436985	2	SS5_PROX	SS5_PROX:INTRON	TSSC2	ENSG00000223756.8	ENST00000685598.1:ENST00000691197.1:ENST00000533775.6:ENST00000690471.1:ENST00000529482.5:ENST00000693396.1:ENST00000685130.1:ENST00000526284.5:ENST00000526488.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	14	99	2	1.26791	1.54533	1.82275	0.0437893	0.0123226	0.14901	0.097243
chr16	21862690	21862789	6461868	0	-	0.515152	(0.476,0.515]	chr16	623459	46	INTRON	INTRON	NPIPB4	ENSG00000185864.18	ENST00000539318.5:ENST00000536041.5:ENST00000543449.1:ENST00000541674.5:ENST00000544693.5:ENST00000538859.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	65	2	1.33919	1.545305	1.75142	0.06316	0.0259024	0.197199	0.121522
chr12	56682993	56683092	5336028	0	-	0.444444	(0.44,0.476]	chr12	510192	96	INTRON	INTRON	PTGES3	ENSG00000110958.16	ENST00000537473.2:ENST00000614328.4:ENST00000262033.11:ENST00000414274.7:ENST00000436399.6:ENST00000448157.6:ENST00000456859.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	18	127	2	1.4337	1.545255	1.65681	0.0282202	0.00707045	0.125657	0.0754923
chr6	149751958	149752058	2996056	0	+	0.42	(0.408,0.44]	chr6	280342	13	INTRON	INTRON	PCMT1	ENSG00000120265.19	ENST00000367384.7:ENST00000367378.6:ENST00000484601.6:ENST00000367380.9:ENST00000544496.5:ENST00000649295.1:ENST00000494411.6:ENST00000460828.6:ENST00000464889.7:ENST00000486585.2:ENST00000495487.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	73	2	1.34899	1.545035	1.74108	0.0424099	0.0342016	0.148082	0.146891
chr9	112222167	112222266	4316830	0	-	0.242424	[0,0.28]	chr9	397001	46	UTR3	UTR3:EXON_MRNA	PTBP3	ENSG00000119314.16	ENST00000334318.10:ENST00000458258.5:ENST00000374257.6:ENST00000374255.6	protein_coding	protein_coding	protein_coding	protein_coding	24	240	2	1.09496	1.54501	1.99506	0.0513578	0.00575367	0.176696	0.0659436
chr16	89780742	89780837	6544440	0	-	0.494737	(0.476,0.515]	chr16	634529	4	INTRON	INTRON	FANCA	ENSG00000187741.16	ENST00000561667.2:ENST00000389301.8:ENST00000568369.6:ENST00000564475.6:ENST00000696275.1:ENST00000696287.1:ENST00000696286.1:ENST00000696274.1:ENST00000696291.1:ENST00000696276.1:ENST00000567205.2:ENST00000567284.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	13	93	2	1.49466	1.5447950000000001	1.59493	0.026776	0.0213255	0.123504	0.123349
chr6	35833939	35834036	3087929	0	-	0.329897	(0.32,0.35]	chr6	288803	11	UTR3	UTR3:EXON_MRNA	SRPK1	ENSG00000096063.16	ENST00000373825.7:ENST00000423325.6:ENST00000346162.10:ENST00000361690.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	31	259	2	1.38651	1.544795	1.70308	0.0132108	0.005938	0.0999551	0.0674604
chr8	31066047	31066144	3728260	0	+	0.505155	(0.476,0.515]	chr8	346546	6	INTRON	INTRON	WRN	ENSG00000165392.11	ENST00000650667.1:ENST00000298139.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	67	2	1.34709	1.544795	1.7425	0.0417334	0.0408438	0.161534	0.147007
chr6	4807601	4807701	2791174	0	+	0.47	(0.44,0.476]	chr6	263598	304	INTRON	INTRON	CDYL	ENSG00000153046.18	ENST00000328908.9:ENST00000491864.1:ENST00000440139.5:ENST00000483019.1:ENST00000397588.8:ENST00000472453.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	20	144	2	1.42979	1.544595	1.6594	0.0188139	0.00867795	0.11792	0.0787985
chr14	75059248	75059348	5923693	0	-	0.5	(0.476,0.515]	chr14	562992	52	INTRON	INTRON	ACYP1	ENSG00000119640.9	ENST00000555463.1:ENST00000555694.5:ENST00000238618.8:ENST00000357971.7	protein_coding	protein_coding	protein_coding	protein_coding	7	51	2	1.40757	1.544245	1.68092	0.0707852	0.0474026	0.184528	0.169265
chr17	82272151	82272233	6852822	0	-	0.5	(0.476,0.515]	chr17	679170	2	EXON_LNCRNA	EXON_LNCRNA:INTRON	CSNK1D	ENSG00000141551.15	ENST00000398519.9:ENST00000314028.11:ENST00000581241.5:ENST00000392334.6:ENST00000403276.7:ENST00000582844.5:ENST00000580446.1:ENST00000581660.5:ENST00000578194.5:ENST00000579316.5:ENST00000584472.5:ENST00000585026.1:ENST00000579308.1:ENST00000581655.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	65	2	1.44826	1.54394	1.63962	0.0482164	0.0346854	0.153146	0.148144
chr10	22711535	22711635	4580474	0	-	0.39	(0.378,0.408]	chr10	422046	170	INTRON	INTRON	PIP4K2A	ENSG00000150867.14	ENST00000376573.9:ENST00000545335.5	protein_coding	protein_coding	protein_coding	protein_coding	8	59	2	1.50417	1.54383	1.58349	0.0653091	0.0384675	0.180158	0.159169
chr3	195951330	195951428	1896615	0	-	0.540816	(0.515,0.57]	chr3	189779	23	EXON_LNCRNA	EXON_LNCRNA:INTRON	ENSG00000260261	ENSG00000260261.2	ENST00000607976.2:ENST00000641484.1:ENST00000570130.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	7	44	2	1.48539	1.5438	1.60221	0.0581855	0.0553982	0.188704	0.165463
chr6	169667484	169667584	3266774	0	-	0.56	(0.515,0.57]	chr6	303226	4	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	WDR27	ENSG00000184465.16	ENST00000448612.6:ENST00000648472.1:ENST00000423258.5:ENST00000647790.1:ENST00000647873.1:ENST00000649303.1:ENST00000647889.1:ENST00000648017.1:ENST00000496752.1:ENST00000650296.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	44	2	1.48539	1.5438	1.60221	0.0581855	0.0553982	0.188704	0.165463
chr12	24849785	24849867	5296911	0	-	0.536585	(0.515,0.57]	chr12	503850	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	BCAT1	ENSG00000060982.15	ENST00000261192.12:ENST00000538118.5:ENST00000342945.9:ENST00000539282.5:ENST00000539780.5:ENST00000544418.1:ENST00000612790.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:processed_transcript	10	59	2	1.52078	1.543795	1.56681	0.064862	0.0211248	0.179394	0.122921
chr1	8609177	8609276	371693	0	-	0.40404	(0.378,0.408]	chr1	43521	185	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000400907.6:ENST00000656437.1:ENST00000659924.1:ENST00000480342.5:ENST00000514428.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	61	2	1.52219	1.543745	1.5653	0.0531838	0.043739	0.162538	0.162255
chr3	42620686	42620779	1406177	0	+	0.301075	(0.28,0.32]	chr3	147670	5	EXON_MRNA	EXON_MRNA:INTRON	NKTR	ENSG00000114857.19	ENST00000468735.6:ENST00000487466.5:ENST00000429888.5:ENST00000232978.13:ENST00000478488.1:ENST00000465584.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	23	210	2	1.18511	1.543685	1.90226	0.0523452	0.00246165	0.160254	0.0459102
chr4	55397213	55397309	1960600	0	+	0.447917	(0.44,0.476]	chr4	196541	2	EXON_LNCRNA	EXON_LNCRNA:INTRON	TMEM165	ENSG00000134851.13	ENST00000381334.10:ENST00000506198.5:ENST00000508404.5:ENST00000514070.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	20	143	2	1.24471	1.54359	1.84247	0.0468215	0.00240132	0.151917	0.0452061
chr18	77990870	77990969	6990270	0	-	0.30303	(0.28,0.32]	chr18	691920	3	INTRON	INTRON	LINC01029	ENSG00000265843.3	ENST00000657337.1:ENST00000669341.1:ENST00000671271.1:ENST00000668585.1:ENST00000667842.1:ENST00000661306.1:ENST00000662598.1:ENST00000662085.1:ENST00000582805.1:ENST00000656930.1:ENST00000578833.3	lncRNA	lncRNA	lncRNA	lncRNA	14	125	2	1.1309	1.54349	1.95608	0.0760982	0.00845157	0.195155	0.0828457
chr11	86029405	86029503	5014444	0	-	0.326531	(0.32,0.35]	chr11	473014	27	INTRON	INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000630913.2:ENST00000528398.5:ENST00000356360.9:ENST00000534412.5:ENST00000531558.1:ENST00000531930.5:ENST00000532041.5:ENST00000525162.5:ENST00000528256.1:ENST00000528411.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	15	119	2	1.31519	1.54338	1.77157	0.0314728	0.0193154	0.144381	0.108861
chr3	43528920	43529020	1674503	0	-	0.37	(0.35,0.378]	chr3	170972	958	INTRON	INTRON	ANO10	ENSG00000160746.13	ENST00000292246.8:ENST00000350459.8:ENST00000396091.7:ENST00000414522.6:ENST00000451430.6:ENST00000448045.1	protein_coding	protein_coding	protein_coding	protein_coding	10	79	2	1.3743	1.543355	1.71241	0.0623871	0.019274	0.175402	0.119831
chr6	119252949	119253049	3204845	0	-	0.37	(0.35,0.378]	chr6	298308	42	INTRON	INTRON	MAN1A1	ENSG00000111885.7	ENST00000368468.4	protein_coding	protein_coding	protein_coding	protein_coding	8	57	2	1.26902	1.543345	1.81767	0.0640429	0.0635011	0.19815	0.177882
chr1	65433820	65433919	137322	0	+	0.323232	(0.32,0.35]	chr1	15494	20	UTR3	UTR3:EXON_MRNA:INTRON	LEPR:LEPROT	ENSG00000116678.20:ENSG00000213625.9	ENST00000371060.7:ENST00000371059.7:ENST00000349533.11:ENST00000371065.9:ENST00000613538.1	protein_coding	protein_coding	protein_coding	protein_coding	11	90	2	1.47728	1.543335	1.60939	0.0439266	0.0274903	0.14937	0.136819
chr5	154763480	154763580	2527079	0	+	0.5	(0.476,0.515]	chr5	241610	56	INTRON	INTRON	LARP1	ENSG00000155506.19	ENST00000687700.1:ENST00000336314.9:ENST00000690816.1:ENST00000518297.6:ENST00000517616.5:ENST00000518892.1:ENST00000521577.1:ENST00000519931.5:ENST00000524248.5:ENST00000685946.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	19	125	2	1.27482	1.54319	1.81156	0.0254386	0.0104707	0.133676	0.0855777
chr9	5004690	5004790	4096017	0	+	0.37	(0.35,0.378]	chr9	373235	183	INTRON	INTRON	JAK2	ENSG00000096968.14	ENST00000636127.1:ENST00000476574.5:ENST00000381652.4	protein_coding	protein_coding	protein_coding	protein_coding	9	68	2	1.42644	1.54317	1.6599	0.0545616	0.0390715	0.165292	0.161228
chr5	151805206	151805300	2522164	0	+	0.329787	(0.32,0.35]	chr5	241378	7	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	G3BP1	ENSG00000145907.16	ENST00000678964.1:ENST00000678925.1:ENST00000394123.7:ENST00000676978.1:ENST00000679289.1:ENST00000677493.1:ENST00000676644.1:ENST00000677757.1:ENST00000520177.6:ENST00000676634.1:ENST00000678854.1:ENST00000676911.1:ENST00000356245.8:ENST00000678646.1:ENST00000677381.1:ENST00000678904.1:ENST00000678910.1:ENST00000677923.1:ENST00000677323.1:ENST00000677687.1:ENST00000678657.1:ENST00000676715.1:ENST00000676899.1:ENST00000676734.1:ENST00000676878.1:ENST00000678295.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	31	257	2	1.24994	1.54306	1.83618	0.0313443	0.00177974	0.13151	0.039274
chr5	139293749	139293826	2499377	0	+	0.597403	(0.57,1]	chr5	238903	2	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	MATR3	ENSG00000280987.4:ENSG00000015479.20	ENST00000509990.5:ENST00000506147.5:ENST00000512107.5:ENST00000361059.7:ENST00000394800.6:ENST00000502929.5:ENST00000504203.5:ENST00000514694.5:ENST00000509644.5:ENST00000505016.2:ENST00000502394.1:ENST00000512876.5:ENST00000513678.5:ENST00000513121.1:ENST00000504045.5:ENST00000504311.5:ENST00000502499.5:ENST00000510056.5:ENST00000511249.5:ENST00000394805.8:ENST00000507860.1:ENST00000509918.5:ENST00000503811.5:ENST00000511978.5:ENST00000618441.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	12	44	2	1.33537	1.5428	1.75023	0.0512131	0.0111057	0.157915	0.0932699
chr15	55363311	55363409	6181447	0	-	0.428571	(0.408,0.44]	chr15	589216	20	INTRON	INTRON	CCPG1	ENSG00000260916.8	ENST00000442196.8:ENST00000310958.10:ENST00000425574.7:ENST00000568543.1:ENST00000568808.5:ENST00000568372.5:ENST00000569205.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	57	2	1.49789	1.54276	1.58763	0.0639217	0.0390091	0.177824	0.161009
chr16	58554950	58555050	6495606	0	-	0.51	(0.476,0.515]	chr16	628529	3	SS5_PROX	SS5_PROX:INTRON	CNOT1	ENSG00000125107.19	ENST00000317147.10:ENST00000569240.5:ENST00000567188.5:ENST00000441024.6:ENST00000569732.1:ENST00000562046.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	63	2	1.52615	1.5425849999999999	1.55902	0.0739267	0.0242957	0.190914	0.130919
chr7	158731091	158731188	3688806	0	-	0.536082	(0.515,0.57]	chr7	342298	2	UTR3	UTR3:EXON_MRNA	ESYT2	ENSG00000117868.18	ENST00000251527.10:ENST00000275418.13:ENST00000652148.1	protein_coding	protein_coding	protein_coding	protein_coding	10	63	2	1.5060500000000001	1.542535	1.57902	0.0511812	0.0229035	0.176696	0.118056
chr4	48354392	48354492	1957151	0	+	0.39	(0.378,0.408]	chr4	196116	119	INTRON	INTRON	SLAIN2	ENSG00000109171.15	ENST00000264313.11	protein_coding	protein_coding	protein_coding	protein_coding	10	75	2	1.33751	1.542415	1.74732	0.0677318	0.0166132	0.18426	0.110511
chr17	62041384	62041483	6810641	0	-	0.343434	(0.32,0.35]	chr17	672946	54	INTRON	INTRON	MED13	ENSG00000108510.10	ENST00000397786.7	protein_coding	protein_coding	protein_coding	protein_coding	9	73	2	1.437	1.542345	1.64769	0.0578603	0.0386366	0.167723	0.159793
chr7	105036325	105036425	3374839	0	+	0.5	(0.476,0.515]	chr7	315854	214	INTRON	INTRON	KMT2E	ENSG00000005483.22	ENST00000622386.2:ENST00000257745.9:ENST00000334884.9:ENST00000311117.8:ENST00000478990.5:ENST00000480368.5:ENST00000495267.5:ENST00000476671.5:ENST00000667857.1:ENST00000474203.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	12	86	2	1.32871	1.5423149999999999	1.75592	0.0678032	0.00862128	0.184298	0.0838846
chr16	21431304	21431404	6460627	0	-	0.26	[0,0.28]	chr16	623219	4	SS5_PROX	SS5_PROX:INTRON	NPIPB3	ENSG00000169246.16	ENST00000521589.5:ENST00000534903.1:ENST00000545358.5:ENST00000543368.1:ENST00000544154.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	36	368	2	1.3359	1.542145	1.7483900000000001	0.0168056	0.0076406	0.11068	0.0752681
chr1	203014968	203015048	295327	0	+	0.45	(0.44,0.476]	chr1	33955	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TMEM183A	ENSG00000163444.12	ENST00000367242.4:ENST00000543891.5:ENST00000468449.5:ENST00000463015.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	57	2	1.49942	1.5419749999999999	1.58453	0.0792118	0.0293513	0.199574	0.142102
chrX	151957879	151957978	7908458	0	-	0.414141	(0.408,0.44]	chrX	804778	5	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	GABRE	ENSG00000102287.19	ENST00000370328.4:ENST00000486255.1:ENST00000441219.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	27	191	2	1.3611	1.541965	1.72283	0.0198256	0.00328972	0.109608	0.0527031
chr6	24718765	24718862	3070724	0	-	0.371134	(0.35,0.378]	chr6	285369	2	UTR5	UTR5:EXON_MRNA:INTRON	C6orf62	ENSG00000112308.13	ENST00000378119.9:ENST00000378102.3	protein_coding	protein_coding	protein_coding	protein_coding	17	127	2	1.18509	1.5416349999999999	1.89818	0.0436768	0.00841104	0.162255	0.0776588
chrX	24786639	24786739	7632644	0	+	0.43	(0.408,0.44]	chrX	781731	109	INTRON	INTRON	POLA1	ENSG00000101868.13	ENST00000672178.1:ENST00000379068.8:ENST00000379059.7:ENST00000611764.2:ENST00000480125.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	62	2	1.29431	1.54156	1.78881	0.0580322	0.0370259	0.188651	0.139194
chr12	116275661	116275761	5425531	0	-	0.44	(0.408,0.44]	chr12	518292	2	SS5_PROX	SS5_PROX:INTRON	MED13L	ENSG00000123066.9	ENST00000281928.9:ENST00000650226.1:ENST00000548743.2:ENST00000551197.2:ENST00000650375.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	51	2	1.53263	1.54149	1.55035	0.0733439	0.0455214	0.190051	0.164236
chr17	46939327	46939421	6620878	0	+	0.425532	(0.408,0.44]	chr17	645730	7	UTR3	UTR3:EXON_MRNA:INTRON	GOSR2	ENSG00000108433.17	ENST00000640608.1:ENST00000640792.1:ENST00000640358.1:ENST00000638634.1:ENST00000225567.9:ENST00000623037.2:ENST00000573224.2:ENST00000639985.1:ENST00000576910.7:ENST00000639199.1:ENST00000639365.1:ENST00000638892.1:ENST00000638838.1:ENST00000638216.1:ENST00000638579.1:ENST00000638189.1:ENST00000639066.1:ENST00000640051.2:ENST00000638697.1:ENST00000640443.1:ENST00000640711.1:ENST00000638219.1:ENST00000639388.1:ENST00000640495.1:ENST00000638374.1:ENST00000640138.1:ENST00000572403.5:ENST00000640068.1:ENST00000640723.1:ENST00000638468.1:ENST00000639713.1:ENST00000640871.1:ENST00000640866.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	51	2	1.49523	1.54143	1.58763	0.0639217	0.0534846	0.180041	0.177824
chr6	26195594	26195689	3070997	0	-	0.473684	(0.44,0.476]	chr6	285430	1	UTR3	UTR3:EXON_MRNA	ENSG00000282988	ENSG00000282988.2	ENST00000635641.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	11	76	2	1.24733	1.54096	1.83459	0.0561984	0.0198542	0.18407	0.109608
chr1	45627683	45627779	439978	0	-	0.291667	(0.28,0.32]	chr1	53292	5	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	GPBP1L1	ENSG00000159592.11	ENST00000290795.7:ENST00000355105.8:ENST00000479235.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	28	252	2	1.20331	1.54093	1.87855	0.0402526	0.00238885	0.144178	0.0450488
chr17	59622365	59622465	6641587	0	+	0.43	(0.408,0.44]	chr17	648527	18	INTRON	INTRON	CLTC	ENSG00000141367.12	ENST00000621829.4:ENST00000393043.5:ENST00000269122.8:ENST00000580081.1:ENST00000579456.5:ENST00000584313.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	13	91	2	1.4727	1.540875	1.60905	0.02971	0.0217118	0.129022	0.123836
chr8	129471562	129471662	4059990	0	-	0.48	(0.476,0.515]	chr8	369602	143	INTRON	INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1:ENST00000676273.1:ENST00000667643.1:ENST00000668791.1:ENST00000663716.1:ENST00000663572.1:ENST00000676148.1:ENST00000667962.1:ENST00000674877.1:ENST00000675316.1:ENST00000674656.1:ENST00000446592.7:ENST00000667341.1:ENST00000675186.1:ENST00000652971.1:ENST00000661447.1:ENST00000674863.1:ENST00000675498.1:ENST00000675527.1:ENST00000676108.1:ENST00000657647.1:ENST00000675589.1:ENST00000675913.1:ENST00000675109.1:ENST00000671632.1:ENST00000671311.1:ENST00000676099.1:ENST00000660652.1:ENST00000675522.1:ENST00000675183.1:ENST00000658861.1:ENST00000663991.1:ENST00000675044.1:ENST00000675435.1:ENST00000674639.1:ENST00000676069.1:ENST00000675532.1:ENST00000674762.1:ENST00000523151.6:ENST00000675948.1:ENST00000665364.1:ENST00000657251.1:ENST00000675166.1:ENST00000674883.1:ENST00000675867.1:ENST00000674580.1:ENST00000675393.1:ENST00000520048.1:ENST00000674906.1:ENST00000676030.1:ENST00000670588.1:ENST00000675072.1:ENST00000664936.1:ENST00000652914.1:ENST00000657069.1	lncRNA	lncRNA	lncRNA	lncRNA	8	58	2	1.53534	1.5408149999999998	1.54629	0.0484352	0.0476737	0.170116	0.153635
chr10	117367863	117367963	4702632	0	-	0.47	(0.44,0.476]	chr10	433752	264	INTRON	INTRON	PDZD8	ENSG00000165650.12	ENST00000334464.7:ENST00000489491.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	63	2	1.20796	1.540605	1.87325	0.0783119	0.0265709	0.197588	0.134088
chr1	36058437	36058537	72445	0	+	0.37	(0.35,0.378]	chr1	9249	28	UTR3	UTR3:EXON_MRNA	AGO3	ENSG00000126070.20	ENST00000373191.9	protein_coding	protein_coding	protein_coding	protein_coding	8	62	2	1.51819	1.54053	1.56287	0.0697648	0.0372715	0.184298	0.155878
chr16	23887676	23887775	6324277	0	+	0.363636	(0.35,0.378]	chr16	605697	185	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000645517.1:ENST00000498739.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	62	2	1.51819	1.54053	1.56287	0.0697648	0.0372715	0.184298	0.155878
chr12	118150298	118150398	5428032	0	-	0.44	(0.408,0.44]	chr12	518617	6	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	TAOK3	ENSG00000135090.14	ENST00000392533.8:ENST00000419821.6:ENST00000543709.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	52	2	1.44993	1.540265	1.6306	0.0638951	0.0544158	0.182272	0.177824
chr9	131153092	131153192	4215910	0	+	0.44	(0.408,0.44]	chr9	386591	8	INTRON	INTRON	NUP214	ENSG00000126883.19	ENST00000695497.1:ENST00000695498.1:ENST00000695496.1:ENST00000695495.1:ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000651022.1:ENST00000525980.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	94	2	1.39837	1.5402	1.68203	0.0342165	0.0175685	0.146942	0.105143
chr11	65424270	65424370	4805785	0	+	0.5	(0.476,0.515]	chr11	446554	16	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000499732.3:ENST00000687132.1:ENST00000501122.2:ENST00000685861.1:ENST00000601801.3:ENST00000612303.2:ENST00000670617.1:ENST00000646243.1:ENST00000645023.1:ENST00000642367.1	lncRNA	lncRNA	lncRNA	lncRNA	123	832	2	1.52112	1.5401	1.55908	0.00257769	0.00156045	0.0452047	0.0365263
chr4	126623588	126623688	2236945	0	-	0.28	[0,0.28]	chr4	219023	1581	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	31	323	2	1.40208	1.5400049999999998	1.67793	0.0267297	0.00488211	0.123349	0.064066
chr7	128559123	128559223	3407635	0	+	0.38	(0.378,0.408]	chr7	318333	250	INTRON	INTRON	ENSG00000280828	ENSG00000280828.1	ENST00000479267.2	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	11	80	2	1.52219	1.53998	1.55777	0.0531838	0.0193744	0.162538	0.119831
chr7	119779290	119779390	3629132	0	-	0.17	[0,0.28]	chr7	337323	268	INTRON	INTRON	LINC02476	ENSG00000225546.6	ENST00000660268.1:ENST00000431071.5:ENST00000426413.2	lncRNA	lncRNA	lncRNA	lncRNA	21	221	2	1.37484	1.5398800000000001	1.70492	0.0353091	0.0084542	0.137535	0.0828633
chr1	153645457	153645551	226827	0	+	0.425532	(0.408,0.44]	chr1	25998	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	CHTOP	ENSG00000160679.13	ENST00000368690.7:ENST00000614256.4:ENST00000368694.8:ENST00000495554.1:ENST00000403433.5:ENST00000368687.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	28	196	2	1.22859	1.53974	1.85089	0.0291839	0.00194301	0.128055	0.0409869
chr6	37174759	37174855	2855302	0	+	0.34375	(0.32,0.35]	chr6	269940	8	UTR3	UTR3:EXON_MRNA	PIM1	ENSG00000137193.14	ENST00000373509.6	protein_coding	protein_coding	protein_coding	protein_coding	71	513	2	1.16032	1.53949	1.91866	0.0160105	0.00161916	0.109464	0.0367655
chr12	53035124	53035224	5141718	0	+	0.33	(0.32,0.35]	chr12	485038	4	SS5_PROX	SS5_PROX:INTRON	EIF4B	ENSG00000063046.18	ENST00000262056.14:ENST00000420463.7:ENST00000416762.7:ENST00000550704.5:ENST00000553209.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	83	2	1.40199	1.539435	1.67688	0.0432025	0.0361676	0.162255	0.138959
chr10	119594013	119594109	4706007	0	-	0.4375	(0.408,0.44]	chr10	434252	1	INTRON	INTRON	TIAL1	ENSG00000151923.18	ENST00000369093.6:ENST00000436547.7:ENST00000489822.5:ENST00000497671.5:ENST00000479729.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	51	2	1.43792	1.5392700000000001	1.64062	0.062843	0.0557275	0.196433	0.165463
chr15	101289052	101289139	6269982	0	-	0.436782	(0.408,0.44]	chr15	598012	5	INTRON	INTRON	SNRPA1	ENSG00000131876.18	ENST00000254193.11:ENST00000558036.5:ENST00000559309.5:ENST00000394082.8:ENST00000540017.6:ENST00000560496.5:ENST00000560383.5:ENST00000558059.5:ENST00000560987.5:ENST00000560856.5:ENST00000558020.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	51	2	1.43792	1.5392700000000001	1.64062	0.062843	0.0557275	0.196433	0.165463
chr12	62346333	62346433	5150424	0	+	0.38	(0.378,0.408]	chr12	487350	98	INTRON	INTRON	USP15	ENSG00000135655.16	ENST00000353364.7:ENST00000550632.5:ENST00000280377.10	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	59	2	1.53052	1.539085	1.54765	0.0744544	0.0334147	0.192012	0.146709
chr17	37217845	37217944	6761111	0	-	0.424242	(0.408,0.44]	chr17	664773	70	INTRON	INTRON	ACACA	ENSG00000278540.5	ENST00000616317.5:ENST00000614428.4:ENST00000612895.4:ENST00000617649.4:ENST00000614450.4:ENST00000612120.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	65	2	1.49789	1.539075	1.58026	0.0444624	0.0390091	0.161009	0.149888
chr22	21798313	21798412	7560690	0	-	0.555556	(0.515,0.57]	chr22	773370	92	INTRON	INTRON	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	32	166	2	1.0545	1.53881	2.02312	0.0326548	0.00193965	0.145164	0.0399529
chr10	73030870	73030969	4647176	0	-	0.424242	(0.408,0.44]	chr10	427500	1	INTRON	INTRON	P4HA1	ENSG00000122884.13	ENST00000394890.7:ENST00000307116.6:ENST00000373008.6:ENST00000440381.5:ENST00000263556.3	protein_coding	protein_coding	protein_coding	protein_coding	11	78	2	1.44993	1.53869	1.62745	0.0638951	0.0145847	0.177824	0.105962
chr10	73007672	73007764	4646938	0	-	0.347826	(0.32,0.35]	chr10	427466	6	UTR3	UTR3:EXON_MRNA	P4HA1	ENSG00000122884.13	ENST00000394890.7:ENST00000307116.6:ENST00000373008.6:ENST00000440381.5:ENST00000263556.3	protein_coding	protein_coding	protein_coding	protein_coding	26	193	2	1.20229	1.53868	1.87507	0.0257276	0.0077436	0.133676	0.0757402
chr16	23841495	23841594	6323813	0	+	0.515152	(0.476,0.515]	chr16	605693	37	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000498058.1:ENST00000645517.1:ENST00000498739.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	45	299	2	1.34464	1.5386250000000001	1.73261	0.00823575	0.0030814	0.0813266	0.0496534
chr8	29061984	29062084	3726593	0	+	0.4	(0.378,0.408]	chr8	346339	47	INTRON	INTRON	HMBOX1	ENSG00000147421.18	ENST00000522468.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	10	74	2	1.43665	1.5386199999999999	1.64059	0.0669652	0.0181131	0.183051	0.114853
chr11	66637067	66637166	4811008	0	+	0.424242	(0.408,0.44]	chr11	447879	73	INTRON	INTRON	RBM14-RBM4	ENSG00000248643.5	ENST00000412278.2:ENST00000511114.1:ENST00000421355.1:ENST00000500635.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	11	79	2	1.29079	1.5383550000000001	1.78592	0.0625053	0.0142075	0.175709	0.103638
chr11	118441102	118441201	4872165	0	+	0.30303	(0.28,0.32]	chr11	454982	16	INTRON	INTRON	ENSG00000285827:KMT2A	ENSG00000285827.1:ENSG00000118058.24	ENST00000649464.1:ENST00000648261.1:ENST00000529852.3:ENST00000649666.2:ENST00000389506.10:ENST00000534358.8:ENST00000533790.3:ENST00000527869.7:ENST00000649690.2:ENST00000532204.6:ENST00000691053.1:ENST00000531904.6:ENST00000649699.1:ENST00000648029.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	11	101	2	1.45235	1.53826	1.62417	0.0543728	0.0213853	0.164972	0.123719
chr5	54006011	54006111	2617864	0	-	0.3	(0.28,0.32]	chr5	248835	940	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	101	2	1.48049	1.5382500000000001	1.59601	0.0503127	0.0236042	0.156383	0.12907
chr16	15150650	15150750	6450962	0	-	0.45	(0.44,0.476]	chr16	621698	118	INTRON	INTRON	PKD1P6	ENSG00000250251.6	ENST00000343738.10	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	8	58	2	1.47433	1.5380449999999999	1.60176	0.0595438	0.0389597	0.16883600000000001	0.160861
chr11	68461826	68461925	4817343	0	+	0.484848	(0.476,0.515]	chr11	448907	6	INTRON	INTRON	PPP6R3	ENSG00000110075.15	ENST00000530427.5:ENST00000528635.5:ENST00000529907.5:ENST00000533127.5:ENST00000534534.5:ENST00000529344.5:ENST00000524845.5:ENST00000393800.7:ENST00000265637.8:ENST00000524904.5:ENST00000393801.7:ENST00000265636.9:ENST00000529710.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	90	2	1.19725	1.5378699999999998	1.87849	0.0605672	0.00992862	0.171122	0.0877296
chr2	171149850	171149950	1263989	0	-	0.42	(0.408,0.44]	chr2	133921	316	INTRON	INTRON	TLK1	ENSG00000198586.14	ENST00000431350.7:ENST00000360843.7:ENST00000359766.7:ENST00000521943.5:ENST00000409443.6:ENST00000413010.5:ENST00000470340.1:ENST00000466220.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	59	2	1.49523	1.5377450000000001	1.58026	0.0534846	0.0444624	0.180041	0.149888
chr6	2887767	2887867	3047314	0	-	0.46	(0.44,0.476]	chr6	283507	6	UTR3	UTR3:EXON_MRNA	SERPINB9	ENSG00000170542.6	ENST00000380698.5	protein_coding	protein_coding	protein_coding	protein_coding	13	93	2	1.46685	1.53769	1.60853	0.0297947	0.020211	0.129138	0.121301
chr18	21597399	21597499	6955083	0	-	0.53	(0.515,0.57]	chr18	688037	4	SS3_PROX	SS3_PROX:INTRON	ESCO1	ENSG00000141446.11	ENST00000269214.10:ENST00000383276.1:ENST00000580101.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	14	79	2	1.3885	1.5376850000000002	1.68687	0.0300837	0.0209834	0.129186	0.122348
chr16	23908644	23908744	6324487	0	+	0.49	(0.476,0.515]	chr16	605701	149	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000498739.1	protein_coding	protein_coding	protein_coding	protein_coding	8	56	2	1.43644	1.53741	1.63838	0.0555021	0.047372	0.169265	0.165463
chr1	28511978	28512076	57235	0	+	0.469388	(0.44,0.476]	chr1	7392	12	INTRON	INTRON	RCC1	ENSG00000180198.17	ENST00000398958.6:ENST00000649185.1:ENST00000427469.5:ENST00000683442.1:ENST00000434290.6:ENST00000373833.10:ENST00000419074.5	protein_coding	protein_coding	protein_coding	protein_coding	30	217	2	1.46637	1.5372	1.60803	0.0112753	0.00537373	0.0944988	0.0642754
chr11	66746894	66746992	4811363	0	+	0.316327	(0.28,0.32]	chr11	447930	16	INTRON	INTRON	C11orf80	ENSG00000173715.18	ENST00000534325.5:ENST00000524551.5:ENST00000525908.6:ENST00000540737.7:ENST00000527634.5:ENST00000527368.5:ENST00000531400.6:ENST00000642265.1:ENST00000532565.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	13	111	2	1.3152	1.537195	1.75919	0.0370688	0.0300418	0.155878	0.129138
chr7	1436341	1436441	3462031	0	-	0.47	(0.44,0.476]	chr7	323656	2	SS5_PROX	SS5_PROX:INTRON	MICALL2	ENSG00000164877.19	ENST00000493998.1:ENST00000496184.1:ENST00000472100.5:ENST00000297508.8:ENST00000467783.1:ENST00000467394.5:ENST00000413446.5:ENST00000479007.5:ENST00000471899.5:ENST00000470807.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	19	132	2	1.50224	1.53702	1.5718	0.0170387	0.0121578	0.104099	0.09644
chr8	140533309	140533407	4075516	0	-	0.5	(0.476,0.515]	chr8	370180	3	INTRON	INTRON	AGO2	ENSG00000123908.12	ENST00000220592.10:ENST00000519980.5:ENST00000523609.5:ENST00000520412.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	70	2	1.32251	1.536965	1.75142	0.0533705	0.0259024	0.179876	0.121522
chr10	101809683	101809783	4680887	0	-	0.26	[0,0.28]	chr10	432007	1	SS5_PROX	SS5_PROX:INTRON	OGA	ENSG00000198408.14	ENST00000439817.5:ENST00000361464.8:ENST00000357797.9:ENST00000370094.7:ENST00000429860.1	protein_coding	protein_coding	protein_coding	protein_coding	21	190	2	1.33407	1.5367899999999999	1.73951	0.0353767	0.0207802	0.137535	0.122348
chr16	29500083	29500163	6470561	0	-	0.4375	(0.408,0.44]	chr16	625133	1	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS5_ADJ:SS3_PROX:SS5_PROX:INTRON	ENSG00000288632:NPIPB12	ENSG00000288632.1:ENSG00000169203.17	ENST00000675579.1:ENST00000550665.5:ENST00000551448.5:ENST00000547235.5:ENST00000550690.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:nonsense_mediated_decay:lncRNA	14	99	2	1.51451	1.536745	1.55898	0.0313913	0.0154752	0.13151	0.108994
chr19	8456873	8456973	7010883	0	+	0.46	(0.44,0.476]	chr19	696143	9	INTRON	INTRON	HNRNPM	ENSG00000099783.12	ENST00000348943.7:ENST00000597813.5:ENST00000600092.5:ENST00000325495.9:ENST00000600806.5:ENST00000620401.4:ENST00000594907.5:ENST00000596984.5:ENST00000601645.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	92	2	1.50943	1.53667	1.56391	0.0316416	0.0187147	0.13151	0.117523
chr1	21723497	21723597	396252	0	-	0.37	(0.35,0.378]	chr1	47270	2	SS5_PROX	SS5_PROX:INTRON	USP48	ENSG00000090686.16	ENST00000400301.5:ENST00000308271.14:ENST00000374732.7:ENST00000529637.5:ENST00000487880.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	22	169	2	1.22532	1.53653	1.84774	0.0406512	0.00306702	0.1451	0.0509893
chr10	69169031	69169131	4445006	0	+	0.41	(0.408,0.44]	chr10	410059	4	SS5_PROX	SS5_PROX:INTRON	VPS26A	ENSG00000122958.15	ENST00000373382.5:ENST00000395098.5:ENST00000263559.11:ENST00000490696.5:ENST00000489794.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	21	138	2	1.39079	1.53641	1.68203	0.0175685	0.0131362	0.105143	0.0999551
chr1	51453235	51453335	453686	0	-	0.31	(0.28,0.32]	chr1	54395	47	INTRON	INTRON	EPS15	ENSG00000085832.17	ENST00000371733.8:ENST00000371730.6	protein_coding	protein_coding	protein_coding	protein_coding	18	161	2	1.25003	1.5362550000000001	1.82248	0.0376805	0.0106689	0.156382	0.0861859
chr16	85560059	85560159	6415432	0	+	0.28	[0,0.28]	chr16	615470	33	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	41	419	2	1.16299	1.53625	1.90951	0.0418843	0.0017535	0.147383	0.0387174
chr2	152655421	152655519	1245869	0	-	0.336735	(0.32,0.35]	chr2	132235	40	UTR3	UTR3:EXON_MRNA	PRPF40A	ENSG00000196504.20	ENST00000410080.8:ENST00000545856.8	protein_coding	protein_coding	protein_coding	protein_coding	23	190	2	1.30631	1.536135	1.76596	0.030444	0.00491337	0.130602	0.0644383
chr1	155680008	155680108	563234	0	-	0.46	(0.44,0.476]	chr1	67196	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	YY1AP1	ENSG00000163374.20	ENST00000368339.9:ENST00000295566.8:ENST00000368330.6:ENST00000436865.5:ENST00000359205.9:ENST00000407221.5:ENST00000404643.5:ENST00000361140.8:ENST00000361831.9:ENST00000347088.9:ENST00000354691.9:ENST00000368340.9:ENST00000311573.9:ENST00000355499.9:ENST00000405763.7:ENST00000493625.5:ENST00000476093.5:ENST00000443231.5:ENST00000496324.5:ENST00000476027.5:ENST00000454523.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	72	2	1.53117	1.536105	1.54104	0.0377545	0.0339289	0.146815	0.140863
chr21	22222312	22222412	7384591	0	+	0.33	(0.32,0.35]	chr21	752727	91	INTRON	INTRON	ENSG00000226043	ENSG00000226043.2	ENST00000667099.1:ENST00000654607.1:ENST00000444130.1	lncRNA	lncRNA	lncRNA	lncRNA	10	78	2	1.25832	1.5361	1.81388	0.0563972	0.0371014	0.184423	0.139201
chr2	131092115	131092215	1229080	0	-	0.38	(0.378,0.408]	chr2	130994	91	INTRON	INTRON	FAM168B	ENSG00000152102.18	ENST00000389915.4:ENST00000409185.5	protein_coding	protein_coding	protein_coding	protein_coding	14	100	2	1.48911	1.53605	1.58299	0.0329718	0.0174154	0.133816	0.11265
chr8	140528047	140528146	4075461	0	-	0.262626	[0,0.28]	chr8	370170	80	UTR3	UTR3:EXON_MRNA	AGO2	ENSG00000123908.12	ENST00000220592.10	protein_coding	protein_coding	protein_coding	protein_coding	11	120	2	1.50357	1.5358800000000001	1.56819	0.0436989	0.0352697	0.162255	0.137535
chr3	17607651	17607751	1629075	0	-	0.44	(0.408,0.44]	chr3	168235	207	INTRON	INTRON	TBC1D5	ENSG00000131374.15	ENST00000253692.11:ENST00000696125.1:ENST00000414318.2:ENST00000429383.8:ENST00000446818.6:ENST00000415814.6:ENST00000452492.6:ENST00000412981.5:ENST00000428355.5:ENST00000425944.5:ENST00000430169.5:ENST00000445294.5:ENST00000414349.5:ENST00000443499.6:ENST00000444756.5:ENST00000497531.5:ENST00000443386.5:ENST00000507877.5:ENST00000446863.5:ENST00000434420.1:ENST00000444471.5:ENST00000486224.5:ENST00000433533.5:ENST00000481396.5:ENST00000480435.5:ENST00000423331.6:ENST00000485432.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	62	2	1.38001	1.5358649999999998	1.69172	0.0486032	0.0444754	0.162826	0.153946
chr6	143176375	143176475	2976343	0	+	0.51	(0.476,0.515]	chr6	279149	108	INTRON	INTRON	AIG1	ENSG00000146416.19	ENST00000367601.8:ENST00000447498.5:ENST00000646199.1:ENST00000357847.9:ENST00000629020.2:ENST00000275235.8:ENST00000494282.6:ENST00000458219.1:ENST00000470265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	11	78	2	1.37743	1.53578	1.69413	0.0477443	0.0200655	0.153019	0.121043
chr1	6547773	6547873	368053	0	-	0.48	(0.476,0.515]	chr1	43225	22	INTRON	INTRON	NOL9	ENSG00000162408.11	ENST00000377705.6	protein_coding	protein_coding	protein_coding	protein_coding	14	99	2	1.52127	1.53575	1.55023	0.0243835	0.019797	0.120593	0.12011
chr2	131212862	131212960	865487	0	+	0.459184	(0.44,0.476]	chr2	97182	13	INTRON	INTRON	PLEKHB2:POTEE	ENSG00000115762.17:ENSG00000188219.16	ENST00000404460.5:ENST00000683005.1	protein_coding	protein_coding	protein_coding	protein_coding	13	92	2	1.41577	1.535725	1.65568	0.042743	0.0130261	0.148082	0.099362
chr17	76270604	76270703	6677190	0	+	0.474747	(0.44,0.476]	chr17	652079	2	UTR3	UTR3:EXON_MRNA	UBALD2	ENSG00000185262.9	ENST00000327490.8	protein_coding	protein_coding	protein_coding	protein_coding	13	89	2	1.5191	1.535555	1.55201	0.0526241	0.0132708	0.160983	0.100189
chr7	148872957	148873056	3670650	0	-	0.444444	(0.44,0.476]	chr7	340632	17	INTRON	INTRON	EZH2	ENSG00000106462.12	ENST00000683292.1:ENST00000320356.7:ENST00000492143.5:ENST00000478654.5:ENST00000350995.6:ENST00000460911.5:ENST00000683744.1:ENST00000682317.1:ENST00000682263.1:ENST00000476773.5:ENST00000483967.5:ENST00000498186.5:ENST00000483012.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	15	106	2	1.35523	1.535475	1.71572	0.0430576	0.00799594	0.148082	0.0800492
chr10	831772	831870	4541573	0	-	0.265306	[0,0.28]	chr10	419243	4	INTRON	INTRON	LARP4B	ENSG00000107929.16	ENST00000688365.1:ENST00000316157.8:ENST00000690516.1:ENST00000689323.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	83	2	1.37159	1.5352700000000001	1.69895	0.0634918	0.0568939	0.198135	0.167723
chr1	246061664	246061763	676248	0	-	0.414141	(0.408,0.44]	chr1	79717	82	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000391836.3:ENST00000464398.1:ENST00000453676.5:ENST00000462422.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	86	2	1.39095	1.535215	1.67948	0.046481	0.0154364	0.151299	0.108739
chr2	172598269	172598369	920332	0	+	0.24	[0,0.28]	chr2	101391	24	UTR3	UTR3:EXON_MRNA	PDK1	ENSG00000152256.14	ENST00000410055.5:ENST00000282077.8	protein_coding	protein_coding	protein_coding	protein_coding	16	147	2	1.10007	1.53489	1.96971	0.0619881	0.0179051	0.193996	0.106396
chr15	66596433	66596533	6050925	0	+	0.34	(0.32,0.35]	chr15	576221	138	INTRON	INTRON	LINC01169	ENSG00000259471.1	ENST00000558797.1	lncRNA	lncRNA	lncRNA	lncRNA	13	113	2	1.52838	1.534865	1.54135	0.0353776	0.0232351	0.150752	0.118148
chr7	33016170	33016270	3515950	0	-	0.5	(0.476,0.515]	chr7	327850	3	SS3_PROX	SS3_PROX:INTRON	NT5C3A	ENSG00000122643.23	ENST00000456458.5:ENST00000610140.7:ENST00000643244.1:ENST00000409467.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	64	2	1.28655	1.53485	1.78315	0.075974	0.0215899	0.194842	0.123836
chr2	69383974	69384074	1147278	0	-	0.3	(0.28,0.32]	chr2	122530	95	INTRON	INTRON	GFPT1	ENSG00000198380.13	ENST00000361060.5:ENST00000357308.9:ENST00000674507.1:ENST00000674438.1:ENST00000494201.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	80	2	1.50806	1.5347	1.56134	0.0740624	0.0317995	0.191153	0.14477
chr16	84752940	84753039	6410443	0	+	0.343434	(0.32,0.35]	chr16	615303	69	INTRON	INTRON	USP10	ENSG00000103194.16	ENST00000540269.6:ENST00000563892.5:ENST00000219473.12:ENST00000570191.5:ENST00000563048.5:ENST00000569038.5:ENST00000570053.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	84	2	1.30436	1.5346950000000001	1.76503	0.0642897	0.0240772	0.178531	0.129859
chr1	227236991	227237090	650904	0	-	0.393939	(0.378,0.408]	chr1	77102	172	INTRON	INTRON	CDC42BPA	ENSG00000143776.20	ENST00000366766.8:ENST00000366769.7:ENST00000334218.9:ENST00000366767.7:ENST00000366764.8:ENST00000478573.6:ENST00000682551.1:ENST00000462553.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	12	89	2	1.395	1.5345	1.674	0.0467334	0.0159536	0.151763	0.109464
chr10	73063958	73064058	4647512	0	-	0.31	(0.28,0.32]	chr10	427530	100	INTRON	INTRON	P4HA1	ENSG00000122884.13	ENST00000394890.7:ENST00000307116.6:ENST00000373008.6:ENST00000440381.5:ENST00000263556.3	protein_coding	protein_coding	protein_coding	protein_coding	13	113	2	1.49102	1.534405	1.57779	0.0502605	0.0197455	0.156383	0.120289
chr4	65143	65243	1905408	0	+	0.56	(0.515,0.57]	chr4	191003	46	INTRON	INTRON	ZNF595	ENSG00000272602.6	ENST00000608255.2:ENST00000609518.5:ENST00000509152.3:ENST00000610261.6	protein_coding	protein_coding	protein_coding	protein_coding	15	90	2	1.40582	1.534345	1.66287	0.0283874	0.0119395	0.126321	0.0962115
chr22	39019664	39019762	7514846	0	+	0.612245	(0.57,1]	chr22	767758	14	UTR3	UTR3:EXON_MRNA	APOBEC3C	ENSG00000244509.4	ENST00000361441.5	protein_coding	protein_coding	protein_coding	protein_coding	11	40	2	1.42137	1.53433	1.64729	0.0395751	0.0231375	0.161534	0.118148
chr14	37170880	37170980	5877996	0	-	0.45	(0.44,0.476]	chr14	558013	2955	INTRON	INTRON	SLC25A21	ENSG00000183032.12	ENST00000331299.6:ENST00000555449.5:ENST00000557611.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	73	2	1.40212	1.5342250000000002	1.66633	0.0524678	0.0243614	0.178047	0.12011
chr9	120782809	120782908	4335358	0	-	0.393939	(0.378,0.408]	chr9	398253	39	INTRON	INTRON	FBXW2	ENSG00000119402.18	ENST00000684405.1:ENST00000684001.1:ENST00000684047.1:ENST00000608872.6:ENST00000453291.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	14	95	2	1.31633	1.534185	1.75204	0.0295659	0.0268575	0.142135	0.123442
chr3	196933722	196933822	1597113	0	+	0.51	(0.476,0.515]	chr3	165450	19	UTR3	UTR3:EXON_MRNA	SENP5	ENSG00000119231.11	ENST00000323460.10	protein_coding	protein_coding	protein_coding	protein_coding	9	64	2	1.43644	1.534155	1.63187	0.047372	0.037661	0.169265	0.14058
chr1	65284692	65284792	135840	0	+	0.49	(0.476,0.515]	chr1	15346	194	INTRON	INTRON	DNAJC6	ENSG00000116675.16	ENST00000463018.5:ENST00000494710.6:ENST00000263441.11:ENST00000395325.7:ENST00000483402.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	16	112	2	1.36776	1.533925	1.70009	0.0305439	0.0109107	0.130975	0.0923273
chr1	35923581	35923680	71068	0	+	0.444444	(0.44,0.476]	chr1	9124	40	UTR3	UTR3:EXON_MRNA	AGO1	ENSG00000092847.13	ENST00000373204.6:ENST00000674426.1:ENST00000674304.1	protein_coding	protein_coding	protein_coding	protein_coding	8	58	2	1.5191	1.53389	1.54868	0.0526241	0.0457575	0.164677	0.160983
chr16	29516383	29516483	6470729	0	-	0.41	(0.408,0.44]	chr16	625147	105	INTRON	INTRON	ENSG00000288632	ENSG00000288632.1	ENST00000675579.1	lncRNA	lncRNA	lncRNA	lncRNA	11	79	2	1.35833	1.53383	1.70933	0.0512983	0.0189186	0.158153	0.118303
chr7	111241403	111241503	3620896	0	-	0.36	(0.35,0.378]	chr7	337093	2775	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	78	2	1.28976	1.53356	1.77736	0.0648731	0.0225073	0.179414	0.124921
chr5	180797358	180797457	2783179	0	-	0.525253	(0.515,0.57]	chr5	262780	11	INTRON	INTRON	MGAT1	ENSG00000131446.17	ENST00000307826.5:ENST00000333055.8:ENST00000393340.7:ENST00000446023.6:ENST00000427865.2:ENST00000504671.1:ENST00000506889.1:ENST00000514283.1:ENST00000512695.1:ENST00000506269.1:ENST00000514438.1:ENST00000502678.1:ENST00000513431.5:ENST00000507384.1:ENST00000504385.5:ENST00000514760.1:ENST00000505682.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	43	2	1.49871	1.5335450000000002	1.56838	0.0770828	0.0424458	0.196285	0.161763
chr6	15283340	15283440	2823319	0	+	0.47	(0.44,0.476]	chr6	265190	340	INTRON	INTRON	JARID2	ENSG00000008083.14	ENST00000341776.7:ENST00000397311.4	protein_coding	protein_coding	protein_coding	protein_coding	11	78	2	1.45853	1.53353	1.60853	0.0470887	0.020211	0.152251	0.121301
chr3	49359721	49359818	1693527	0	-	0.463918	(0.44,0.476]	chr3	173668	7	UTR3	UTR3:EXON_MRNA	RHOA	ENSG00000067560.14	ENST00000678200.1:ENST00000422781.6:ENST00000676712.2:ENST00000678921.2:ENST00000445425.6:ENST00000454011.7:ENST00000418115.6:ENST00000679208.1	protein_coding	protein_coding	protein_coding	protein_coding	11	78	2	1.53117	1.533485	1.5358	0.0377545	0.0263135	0.140863	0.133676
chr1	21170918	21171018	393572	0	-	0.39	(0.378,0.408]	chr1	46848	8	INTRON	INTRON	EIF4G3	ENSG00000075151.24	ENST00000374935.7:ENST00000602326.6:ENST00000685872.1:ENST00000686579.1:ENST00000688741.1:ENST00000400422.6:ENST00000634879.2:ENST00000693470.1:ENST00000685814.1:ENST00000356916.7:ENST00000438975.5:ENST00000411888.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	88	2	1.21175	1.53341	1.85507	0.0680021	0.0109894	0.184298	0.0927187
chr21	10339348	10339442	7427414	0	-	0.319149	(0.28,0.32]	chr21	757675	4	INTRON	INTRON	ENSG00000277693	ENSG00000277693.2	ENST00000622592.1:ENST00000616952.1:ENST00000667012.1	lncRNA	lncRNA	lncRNA	lncRNA	11	104	2	1.49395	1.5333999999999999	1.57285	0.0423482	0.0308366	0.161744	0.13151
chr1	36231549	36231648	73002	0	+	0.333333	(0.32,0.35]	chr1	9371	57	INTRON	INTRON	THRAP3	ENSG00000054118.15	ENST00000469141.6:ENST00000648638.1:ENST00000354618.10	protein_coding	protein_coding	protein_coding	protein_coding	8	68	2	1.33779	1.533385	1.72898	0.0707935	0.0425433	0.184528	0.161951
chr16	22507499	22507599	6322684	0	+	0.26	[0,0.28]	chr16	605451	1	SS5_PROX	SS5_PROX:INTRON	NPIPB5	ENSG00000243716.11	ENST00000415654.5:ENST00000415833.6:ENST00000546168.5:ENST00000543407.5:ENST00000356156.7:ENST00000541154.5:ENST00000545375.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	29	301	2	1.25777	1.533255	1.80874	0.0390914	0.00375005	0.143072	0.0562562
chr22	38732791	38732891	7514593	0	+	0.48	(0.476,0.515]	chr22	767662	22	UTR3	UTR3:EXON_MRNA:INTRON	GTPBP1	ENSG00000100226.16	ENST00000216044.10:ENST00000458073.5:ENST00000484971.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	71	2	1.37743	1.53325	1.68907	0.0477443	0.0296007	0.153019	0.142135
chr12	22648350	22648450	5094978	0	+	0.44	(0.408,0.44]	chr12	481236	19	INTRON	INTRON	ETNK1	ENSG00000139163.16	ENST00000671733.1:ENST00000266517.9:ENST00000538218.2:ENST00000673496.1:ENST00000673406.1:ENST00000672995.1:ENST00000539974.1:ENST00000673188.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	72	2	1.31757	1.5328499999999998	1.74813	0.0705974	0.0163902	0.184528	0.109715
chr2	61514982	61515080	1130986	0	-	0.489796	(0.476,0.515]	chr2	121606	1	INTRON	INTRON	XPO1	ENSG00000082898.19	ENST00000676553.1:ENST00000677556.1:ENST00000677814.1:ENST00000676771.1:ENST00000677803.1:ENST00000677239.1:ENST00000678790.1:ENST00000677928.1:ENST00000678182.1:ENST00000677150.1:ENST00000678172.1:ENST00000678360.1:ENST00000678081.1:ENST00000676889.1:ENST00000676783.1:ENST00000679035.1:ENST00000677422.1:ENST00000677417.1:ENST00000677813.1:ENST00000676999.1:ENST00000676667.1:ENST00000678263.1:ENST00000678877.1:ENST00000677933.1:ENST00000680228.1:ENST00000677289.1:ENST00000677190.1:ENST00000401558.7:ENST00000428210.5:ENST00000677290.1:ENST00000677850.1:ENST00000451765.6:ENST00000676789.1:ENST00000678741.1:ENST00000404992.6:ENST00000406957.5:ENST00000443240.5:ENST00000476585.5:ENST00000468259.1:ENST00000420673.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	27	181	2	1.31267	1.5326	1.75253	0.016202	0.0056478	0.109464	0.0653997
chr1	109403382	109403481	521069	0	-	0.515152	(0.476,0.515]	chr1	61220	9	INTRON	INTRON	PSMA5	ENSG00000143106.13	ENST00000271308.9:ENST00000490870.5:ENST00000538610.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	78	2	1.41081	1.532535	1.65426	0.0430655	0.0231344	0.148082	0.126939
chr10	17445465	17445565	4568927	0	-	0.48	(0.476,0.515]	chr10	421387	545	INTRON	INTRON	ST8SIA6	ENSG00000148488.17	ENST00000377602.5:ENST00000648997.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	72	2	1.43644	1.53213	1.62782	0.047372	0.0274391	0.169265	0.123904
chr7	148822862	148822962	3670138	0	-	0.55	(0.515,0.57]	chr7	340580	21	INTRON	INTRON	EZH2	ENSG00000106462.12	ENST00000683292.1:ENST00000320356.7:ENST00000492143.5:ENST00000478654.5:ENST00000350995.6:ENST00000460911.5:ENST00000683744.1:ENST00000682317.1:ENST00000682263.1:ENST00000684300.1:ENST00000476773.5:ENST00000483967.5:ENST00000498186.5:ENST00000483012.1:ENST00000682401.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	51	298	2	1.28654	1.532035	1.77753	0.0117199	7.77821e-4	0.0894475	0.0256531
chr19	937431	937531	6992604	0	+	0.47	(0.44,0.476]	chr19	692392	43	INTRON	INTRON	ARID3A	ENSG00000116017.11	ENST00000263620.8:ENST00000587532.5:ENST00000457152.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	70	2	1.4592	1.531935	1.60467	0.0411383	0.0342963	0.147255	0.1451
chr19	973455	973555	6992975	0	+	0.63	(0.57,1]	chr19	692440	15	UTR3	UTR3:EXON_MRNA	ARID3A	ENSG00000116017.11	ENST00000263620.8	protein_coding	protein_coding	protein_coding	protein_coding	22	73	2	1.10611	1.53188	1.95765	0.0384035	0.00280297	0.158939	0.0470322
chr6	17702584	17702683	3066171	0	-	0.50505	(0.476,0.515]	chr6	284872	136	INTRON	INTRON	NUP153	ENSG00000124789.12	ENST00000613258.4:ENST00000537253.5:ENST00000262077.3	protein_coding	protein_coding	protein_coding	protein_coding	15	107	2	1.48564	1.531625	1.57761	0.0251821	0.0164218	0.133519	0.10206
chr15	78874320	78874420	6069552	0	+	0.31	(0.28,0.32]	chr15	578182	4	SS5_PROX	SS5_PROX:INTRON	MORF4L1	ENSG00000185787.15	ENST00000379535.8:ENST00000559697.5:ENST00000331268.9:ENST00000557961.5:ENST00000559930.5:ENST00000426013.7:ENST00000558746.5:ENST00000558893.5:ENST00000558830.5:ENST00000558522.5:ENST00000559619.5:ENST00000559345.5:ENST00000561171.5:ENST00000558502.5:ENST00000559258.5:ENST00000559690.5:ENST00000559158.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	75	2	1.51776	1.531485	1.54521	0.0548272	0.0528371	0.178899	0.165463
chr19	40456899	40456998	7184492	0	-	0.333333	(0.32,0.35]	chr19	726746	51	INTRON	INTRON	BLVRB	ENSG00000090013.11	ENST00000643519.1:ENST00000263368.9:ENST00000595483.5:ENST00000643596.1:ENST00000601346.5:ENST00000597870.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	16	132	2	1.44744	1.531395	1.61535	0.0356123	0.0112729	0.138061	0.0944799
chrX	71539471	71539570	7680011	0	+	0.393939	(0.378,0.408]	chrX	786397	10	INTRON	INTRON	OGT	ENSG00000147162.14	ENST00000373719.8:ENST00000488174.5:ENST00000373701.7:ENST00000498566.3:ENST00000444774.3:ENST00000455587.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	15	110	2	1.43527	1.5312649999999999	1.62726	0.0342334	0.0118749	0.135511	0.0962115
chr2	86963724	86963822	824639	0	+	0.418367	(0.408,0.44]	chr2	92143	1	INTRON	INTRON	RGPD1	ENSG00000187627.17	ENST00000409776.6:ENST00000398193.8:ENST00000641458.2	protein_coding	protein_coding	protein_coding	protein_coding	14	87	2	1.27331	1.53106	1.78881	0.0370259	0.0307161	0.143385	0.139194
chr17	76734406	76734503	6844228	0	-	0.453608	(0.44,0.476]	chr17	677087	4	UTR3	UTR3:EXON_MRNA	SRSF2	ENSG00000161547.17	ENST00000392485.2:ENST00000359995.10:ENST00000585202.5:ENST00000582449.5:ENST00000586778.1:ENST00000452355.7:ENST00000589919.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	50	353	2	0.996711	1.5308755	2.06504	0.038419	3.89981e-4	0.158995	0.0184321
chr4	24520989	24521089	2118358	0	-	0.4	(0.378,0.408]	chr4	209181	3	INTRON	INTRON	DHX15	ENSG00000109606.13	ENST00000510645.5	protein_coding	processed_transcript	protein_coding	processed_transcript	12	88	2	1.24166	1.53085	1.82004	0.0623885	0.012605	0.175402	0.0980801
chr2	23855708	23855808	1080225	0	-	0.49	(0.476,0.515]	chr2	115293	213	INTRON	INTRON	ATAD2B	ENSG00000119778.15	ENST00000238789.10	protein_coding	protein_coding	protein_coding	protein_coding	10	71	2	1.44826	1.53075	1.61324	0.0482164	0.026684	0.153146	0.134419
chr8	9004696	9004796	3695575	0	+	0.51	(0.476,0.515]	chr8	342899	4	SS5_PROX	SS5_PROX:INTRON	ERI1	ENSG00000104626.15	ENST00000519292.5:ENST00000521844.1:ENST00000250263.8:ENST00000520684.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	50	2	1.52615	1.530745	1.53534	0.0739267	0.0476737	0.190914	0.170116
chr13	110902185	110902284	5650517	0	-	0.292929	(0.28,0.32]	chr13	538370	11	INTRON	INTRON	ANKRD10	ENSG00000088448.14	ENST00000267339.6:ENST00000489973.6:ENST00000310847.8:ENST00000465753.1:ENST00000494859.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	47	417	2	1.53013	1.53072	1.53131	0.010096	0.00483863	0.0850389	0.0640618
chr6	44247695	44247780	2872834	0	+	0.623529	(0.57,1]	chr6	272577	1	INTRON	INTRON	HSP90AB1	ENSG00000096384.20	ENST00000620073.4:ENST00000353801.7:ENST00000371646.10	protein_coding	protein_coding	protein_coding	protein_coding	25	94	2	1.2399	1.5307	1.8215	0.0328848	0.00110312	0.145164	0.0305601
chr11	119096705	119096802	5046732	0	-	0.463918	(0.44,0.476]	chr11	475993	8	UTR3	UTR3:EXON_MRNA	DPAGT1	ENSG00000172269.20	ENST00000682232.1:ENST00000409993.6:ENST00000392834.7:ENST00000354202.9:ENST00000481084.5:ENST00000461999.1:ENST00000530052.2:ENST00000682652.1:ENST00000683955.1:ENST00000684345.1:ENST00000683373.1:ENST00000682192.1:ENST00000683143.1:ENST00000682791.1:ENST00000682946.1:ENST00000682811.1:ENST00000683567.1:ENST00000524658.2:ENST00000683558.1:ENST00000682517.1:ENST00000684315.1:ENST00000684682.1:ENST00000682326.1:ENST00000684499.1:ENST00000684252.1:ENST00000682691.1:ENST00000684142.1:ENST00000684255.1:ENST00000445653.6:ENST00000682191.1:ENST00000414373.5:ENST00000682665.1:ENST00000639704.1:ENST00000636404.1:ENST00000638850.1:ENST00000640747.1:ENST00000682883.1:ENST00000682404.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	67	2	1.39666	1.53064	1.66462	0.0520247	0.0344316	0.159508	0.147767
chr11	12973274	12973373	4915905	0	-	0.454545	(0.44,0.476]	chr11	460662	77	INTRON	INTRON	LINC00958	ENSG00000251381.8	ENST00000658243.1:ENST00000527945.2	lncRNA	lncRNA	lncRNA	lncRNA	12	85	2	1.34977	1.5304799999999998	1.71119	0.0522828	0.0136438	0.160182	0.101813
chr19	57305492	57305591	7103689	0	+	0.424242	(0.408,0.44]	chr19	712864	13	EXON_LNCRNA	EXON_LNCRNA	ENSG00000268205	ENSG00000268205.1	ENST00000593427.1	lncRNA	lncRNA	lncRNA	lncRNA	15	106	2	1.31465	1.5301	1.74555	0.0374817	0.0118908	0.140071	0.0962115
chr16	89458084	89458184	6543277	0	-	0.3	(0.28,0.32]	chr16	634281	264	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	14	124	2	1.50809	1.5299399999999999	1.55179	0.0465667	0.0156405	0.151518	0.109464
chr6	140895930	140896030	3241110	0	-	0.33	(0.32,0.35]	chr6	301065	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	ENSG00000234147	ENSG00000234147.3	ENST00000650553.2:ENST00000692940.1:ENST00000683641.1:ENST00000682196.1:ENST00000684320.1:ENST00000683889.1:ENST00000683062.1:ENST00000682608.1:ENST00000455011.2:ENST00000682812.1:ENST00000683340.1:ENST00000683841.1:ENST00000683589.1:ENST00000684268.1:ENST00000683480.1:ENST00000684120.1	lncRNA	lncRNA	lncRNA	lncRNA	7	60	2	1.38564	1.529785	1.67393	0.0793006	0.0496128	0.199711	0.174685
chr1	52443698	52443797	457441	0	-	0.454545	(0.44,0.476]	chr1	54961	50	INTRON	INTRON	TUT4	ENSG00000134744.14	ENST00000371544.7:ENST00000257177.9:ENST00000531722.5:ENST00000474453.6:ENST00000469810.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	16	110	2	1.19201	1.5297800000000001	1.86755	0.0501504	0.00715715	0.156383	0.0756118
chr5	150022967	150023066	2518888	0	+	0.383838	(0.378,0.408]	chr5	240788	39	INTRON	INTRON	HMGXB3	ENSG00000113716.13	ENST00000613459.4:ENST00000503427.5:ENST00000502717.6	protein_coding	protein_coding	protein_coding	protein_coding	14	103	2	1.38255	1.5294599999999998	1.67637	0.040607	0.0121401	0.1451	0.0963966
chr7	6402541	6402636	3273310	0	+	0.326316	(0.32,0.35]	chr7	304346	2	UTR3	UTR3:EXON_MRNA	RAC1	ENSG00000136238.19	ENST00000348035.9	protein_coding	protein_coding	protein_coding	protein_coding	13	106	2	1.26251	1.52942	1.79633	0.0481909	0.0177594	0.171808	0.105629
chrX	63348893	63348991	7825350	0	-	0.234694	[0,0.28]	chrX	798580	18	UTR3	UTR3:EXON_MRNA	SPIN4	ENSG00000186767.7	ENST00000374884.3	protein_coding	protein_coding	protein_coding	protein_coding	11	112	2	1.42268	1.5293700000000001	1.63606	0.0468781	0.037357	0.155878	0.151917
chr1	212896382	212896482	310233	0	+	0.44	(0.408,0.44]	chr1	35838	12	UTR3	UTR3:EXON_MRNA	FLVCR1	ENSG00000162769.13	ENST00000366971.9	protein_coding	protein_coding	protein_coding	protein_coding	14	91	2	1.24825	1.52921	1.81017	0.0375059	0.0217525	0.156054	0.11491
chr3	41221347	41221447	1403243	0	+	0.41	(0.408,0.44]	chr3	147418	9	UTR5	UTR5:EXON_MRNA:INTRON	CTNNB1	ENSG00000168036.18	ENST00000643541.1:ENST00000426215.5:ENST00000645210.1:ENST00000646381.1:ENST00000405570.6:ENST00000642248.1:ENST00000433400.6:ENST00000642992.1:ENST00000431914.6:ENST00000642836.1:ENST00000396185.8:ENST00000642986.1:ENST00000644678.1:ENST00000643031.1:ENST00000396183.7:ENST00000645982.1:ENST00000453024.6:ENST00000645900.1:ENST00000647264.1:ENST00000646174.1:ENST00000643992.1:ENST00000642886.1:ENST00000647390.1:ENST00000643052.1:ENST00000488914.2:ENST00000349496.11:ENST00000642426.1:ENST00000646074.1:ENST00000645276.1:ENST00000644138.1:ENST00000646116.1:ENST00000644873.1:ENST00000643865.1:ENST00000644867.1:ENST00000646725.1:ENST00000645493.1:ENST00000646369.1:ENST00000643977.1:ENST00000647413.1:ENST00000644524.1:ENST00000645305.1:ENST00000643297.1:ENST00000450969.6:ENST00000642315.1:ENST00000645320.1:ENST00000441708.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	58	2	1.40374	1.52919	1.6546400000000001	0.0721345	0.0329965	0.187433	0.145298
chr4	770498	770598	2093303	0	-	0.41	(0.408,0.44]	chr4	206823	25	INTRON	INTRON	ENSG00000249592	ENSG00000249592.7	ENST00000660016.1:ENST00000665579.1:ENST00000503571.5:ENST00000652800.1:ENST00000507446.1	lncRNA	lncRNA	lncRNA	lncRNA	29	199	2	1.50014	1.528925	1.55771	0.0149825	0.00468603	0.0994339	0.0631419
chr4	73251082	73251182	2160750	0	-	0.39	(0.378,0.408]	chr4	212799	281	INTRON	INTRON	ANKRD17	ENSG00000132466.20	ENST00000358602.9:ENST00000558247.5:ENST00000330838.10:ENST00000561029.1	protein_coding	protein_coding	protein_coding	protein_coding	22	158	2	1.48798	1.52889	1.5698	0.0208913	0.00717314	0.111827	0.0756118
chr4	1211841	1211940	2094617	0	-	0.323232	(0.32,0.35]	chr4	207101	5	UTR3	UTR3:EXON_MRNA	CTBP1	ENSG00000159692.16	ENST00000382952.8:ENST00000290921.10:ENST00000503594.5:ENST00000514596.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	25	208	2	1.44649	1.5287350000000002	1.61098	0.0138463	0.0104692	0.10247	0.0855777
chr12	79909699	79909799	5376280	0	-	0.36	(0.35,0.378]	chr12	512793	364	INTRON	INTRON	PPP1R12A	ENSG00000058272.19	ENST00000261207.9:ENST00000450142.7:ENST00000437004.6:ENST00000546369.5:ENST00000550107.5:ENST00000547330.5:ENST00000550510.5	protein_coding	protein_coding	protein_coding	protein_coding	7	55	2	1.5118	1.528715	1.54563	0.0789277	0.046845	0.198963	0.167716
chr18	73250795	73250895	6988482	0	-	0.35	(0.32,0.35]	chr18	691707	1	SS3_PROX	SS3_PROX:INTRON	LINC02864	ENSG00000263711.6	ENST00000584544.5:ENST00000581011.5:ENST00000581862.6:ENST00000669547.1:ENST00000661525.1:ENST00000583405.5:ENST00000582571.2	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	11	89	2	1.44797	1.52868	1.60939	0.0439266	0.0304475	0.14937	0.143385
chr5	180500086	180500186	2561920	0	+	0.4	(0.378,0.408]	chr5	245082	41	INTRON	INTRON	CNOT6	ENSG00000113300.13	ENST00000261951.9:ENST00000393356.7:ENST00000507016.1:ENST00000618123.4:ENST00000502447.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	71	2	1.52653	1.5285250000000001	1.53052	0.0744544	0.0217942	0.192012	0.123836
chr16	58161997	58162095	6494816	0	-	0.520408	(0.515,0.57]	chr16	628311	26	EXON_MRNA	EXON_MRNA:INTRON	CSNK2A2	ENSG00000070770.10	ENST00000262506.8:ENST00000565188.2:ENST00000566813.5:ENST00000676463.1:ENST00000677823.1:ENST00000567730.6:ENST00000563307.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	14	84	2	1.49901	1.528325	1.55764	0.0243165	0.0183076	0.12011	0.11576
chr15	60381642	60381741	6195164	0	-	0.40404	(0.378,0.408]	chr15	590323	66	INTRON	INTRON	ANXA2	ENSG00000182718.18	ENST00000396024.7:ENST00000559818.6:ENST00000679109.1:ENST00000676687.1:ENST00000558169.6:ENST00000557906.6:ENST00000558558.6:ENST00000559113.6:ENST00000559780.6:ENST00000559956.6:ENST00000560468.6:ENST00000678870.1:ENST00000678061.1:ENST00000678450.1:ENST00000677968.1:ENST00000451270.7:ENST00000558985.6:ENST00000678796.1:ENST00000559647.2:ENST00000332680.8:ENST00000560014.5:ENST00000504475.6:ENST00000421017.6:ENST00000560466.5:ENST00000558132.5:ENST00000561022.5:ENST00000560367.6:ENST00000558503.6:ENST00000558998.5:ENST00000559559.5:ENST00000560165.5:ENST00000560389.5:ENST00000559725.5:ENST00000559350.5:ENST00000558986.5:ENST00000677258.1:ENST00000559467.5:ENST00000561445.5:ENST00000557937.5:ENST00000557904.5:ENST00000559370.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	64	2	1.42205	1.528315	1.63458	0.0573057	0.0390695	0.167723	0.161228
chr1	1388743	1388843	359797	0	-	0.44	(0.408,0.44]	chr1	41760	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CCNL2	ENSG00000221978.13	ENST00000400809.8:ENST00000480479.5:ENST00000482621.5:ENST00000496007.5:ENST00000482365.5:ENST00000481223.6:ENST00000418865.6:ENST00000505849.5:ENST00000488340.5:ENST00000492998.5:ENST00000469113.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	17	119	2	1.39095	1.528055	1.66516	0.046481	0.00579158	0.151299	0.068458
chr11	65441545	65441645	4805958	0	+	0.23	[0,0.28]	chr11	446554	189	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	50	513	2	1.49305	1.528055	1.56306	0.0141028	0.0051763	0.0959618	0.0652953
chr5	32426882	32426982	2599150	0	-	0.3	(0.28,0.32]	chr5	246966	64	INTRON	INTRON	ZFR	ENSG00000056097.16	ENST00000265069.13:ENST00000505366.1:ENST00000505204.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	92	2	1.42366	1.52801	1.63236	0.0587737	0.0273014	0.167915	0.136494
chr12	93383026	93383126	5188991	0	+	0.34	(0.32,0.35]	chr12	490788	16	INTRON	INTRON	NUDT4	ENSG00000173598.14	ENST00000337179.9:ENST00000415493.7:ENST00000549992.5:ENST00000550056.5:ENST00000547014.5:ENST00000548662.5:ENST00000546925.1	protein_coding	protein_coding	protein_coding	protein_coding	27	214	2	1.47087	1.5278100000000001	1.58475	0.0282825	0.00463442	0.125858	0.0628132
chr13	41261332	41261421	5578523	0	-	0.224719	[0,0.28]	chr13	533289	1	EXON_LNCRNA	EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MTRF1	ENSG00000120662.16	ENST00000379480.9:ENST00000379477.5:ENST00000239852.10:ENST00000452359.5:ENST00000497679.6:ENST00000430347.3:ENST00000492827.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	10	106	2	1.43106	1.5277699999999999	1.62448	0.0624869	0.0302032	0.175667	0.142761
chr10	28565824	28565924	4414132	0	+	0.32	(0.28,0.32]	chr10	407148	274	INTRON	INTRON	WAC	ENSG00000095787.24	ENST00000680735.1:ENST00000375664.8:ENST00000428935.6:ENST00000651598.1:ENST00000628285.3:ENST00000681112.1:ENST00000679570.1:ENST00000375646.5:ENST00000354911.9:ENST00000347934.8:ENST00000420266.6:ENST00000651885.1:ENST00000651441.1:ENST00000679398.1:ENST00000424454.5:ENST00000442148.6:ENST00000448193.5:ENST00000414108.6:ENST00000679428.1:ENST00000439676.5:ENST00000345541.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	86	2	1.29164	1.527285	1.76293	0.0766478	0.0401321	0.196164	0.161534
chr11	667862	667961	4889202	0	-	0.545455	(0.515,0.57]	chr11	457709	77	INTRON	INTRON	DEAF1	ENSG00000177030.19	ENST00000382409.4:ENST00000527170.5:ENST00000685854.1:ENST00000683307.1:ENST00000528864.6:ENST00000525626.6:ENST00000682936.1:ENST00000690068.1:ENST00000692634.1:ENST00000687329.1:ENST00000686001.1:ENST00000689835.1:ENST00000525904.5:ENST00000530813.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	13	81	2	1.3492	1.526935	1.70467	0.0480671	0.0109309	0.171405	0.0873034
chr12	112083615	112083714	5415171	0	-	0.393939	(0.378,0.408]	chr12	517230	21	INTRON	INTRON	NAA25	ENSG00000111300.10	ENST00000261745.9:ENST00000552527.5:ENST00000549711.5:ENST00000551858.1:ENST00000547133.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	14	104	2	1.4946	1.5269	1.5592	0.024523	0.0224236	0.131869	0.11692
chr3	177184584	177184684	1872320	0	-	0.45	(0.44,0.476]	chr3	187438	133	INTRON	INTRON	TBL1XR1	ENSG00000177565.18	ENST00000457928.7:ENST00000430069.5:ENST00000673974.1:ENST00000352800.10:ENST00000422442.6:ENST00000428970.5:ENST00000424913.5:ENST00000437738.5:ENST00000431421.5:ENST00000635794.1:ENST00000630796.2:ENST00000450267.5:ENST00000630833.2:ENST00000431674.5:ENST00000422066.5:ENST00000443315.5:ENST00000627825.2:ENST00000427349.5:ENST00000413084.5:ENST00000637137.1:ENST00000491623.2:ENST00000637544.1:ENST00000636187.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	12	84	2	1.45853	1.52684	1.59515	0.0470887	0.0165796	0.152251	0.110511
chr4	103171240	103171340	2215325	0	-	0.29	(0.28,0.32]	chr4	217118	73	INTRON	INTRON	CENPE	ENSG00000138778.14	ENST00000380026.8:ENST00000265148.9	protein_coding	protein_coding	protein_coding	protein_coding	10	90	2	1.50806	1.526635	1.54521	0.0548272	0.0317995	0.165463	0.14477
chr1	207794170	207794266	305340	0	+	0.3125	(0.28,0.32]	chr1	35147	7	UTR3	UTR3:EXON_MRNA:INTRON	CD46	ENSG00000117335.21	ENST00000695779.1:ENST00000695777.1:ENST00000695778.1:ENST00000496723.2:ENST00000695782.1:ENST00000695781.1:ENST00000695780.1:ENST00000636114.2:ENST00000367042.6:ENST00000322875.8:ENST00000322918.9:ENST00000354848.5:ENST00000357714.5:ENST00000358170.6:ENST00000367041.5:ENST00000367047.5:ENST00000695783.1:ENST00000695784.1:ENST00000469535.5:ENST00000360212.6:ENST00000695786.1:ENST00000490278.2:ENST00000462968.2:ENST00000695788.1:ENST00000695790.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	42	376	2	1.31676	1.52663	1.7365	0.0218189	0.00235108	0.11491	0.0444596
chr2	10330062	10330162	691901	0	+	0.33	(0.32,0.35]	chr2	81129	53	INTRON	INTRON	HPCAL1	ENSG00000115756.13	ENST00000423674.5:ENST00000307845.8:ENST00000381765.7:ENST00000419810.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	59	2	1.45026	1.526615	1.60297	0.0647328	0.0622478	0.194723	0.179192
chr19	10808368	10808468	7014699	0	+	0.29	(0.28,0.32]	chr19	697018	4	SS3_PROX	SS3_PROX:INTRON	DNM2	ENSG00000079805.19	ENST00000355667.11:ENST00000389253.9:ENST00000585892.5:ENST00000359692.10:ENST00000408974.8:ENST00000587830.2:ENST00000681972.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	83	2	1.38068	1.5260099999999999	1.67134	0.0590236	0.0387947	0.189982	0.143072
chr7	158809461	158809561	3689613	0	-	0.33	(0.32,0.35]	chr7	342421	100	INTRON	INTRON	ESYT2	ENSG00000117868.18	ENST00000251527.10:ENST00000275418.13:ENST00000652148.1:ENST00000483958.5:ENST00000497111.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	89	2	1.47728	1.525855	1.57443	0.048436	0.0274903	0.153635	0.136819
chr8	100940023	100940123	4005849	0	-	0.37	(0.35,0.378]	chr8	366668	51	INTRON	INTRON	YWHAZ	ENSG00000164924.18	ENST00000395958.6:ENST00000395957.6:ENST00000457309.2:ENST00000395956.7:ENST00000353245.7:ENST00000521309.5:ENST00000522542.5:ENST00000395953.6:ENST00000395948.6:ENST00000395951.7:ENST00000419477.6:ENST00000521607.5:ENST00000480304.5:ENST00000518736.5:ENST00000517727.5:ENST00000521328.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	12	92	2	1.38936	1.52578	1.6622	0.0361852	0.0263261	0.152746	0.122221
chr16	74999485	74999578	6389420	0	+	0.537634	(0.515,0.57]	chr16	614470	6	UTR5	UTR5:EXON_MRNA	ZNRF1	ENSG00000186187.12	ENST00000335325.9:ENST00000320619.10:ENST00000567962.5:ENST00000566250.5	protein_coding	protein_coding	protein_coding	protein_coding	28	165	2	1.47063	1.52576	1.58089	0.010401	0.00527961	0.0854166	0.0656295
chr7	119711763	119711862	3628455	0	-	0.343434	(0.32,0.35]	chr7	337319	64	INTRON	INTRON	LINC02476	ENSG00000225546.6	ENST00000660268.1:ENST00000431071.5	lncRNA	lncRNA	lncRNA	lncRNA	10	84	2	1.43561	1.52576	1.61591	0.0543363	0.0277247	0.164972	0.137011
chr22	21826638	21826738	7560976	0	-	0.53	(0.515,0.57]	chr22	773388	184	INTRON	INTRON	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	17	103	2	1.44468	1.525605	1.60653	0.0231071	0.010847	0.12687	0.0873034
chr18	10551100	10551198	6874086	0	+	0.438776	(0.408,0.44]	chr18	680975	10	UTR3	UTR3:EXON_MRNA	NAPG	ENSG00000134265.13	ENST00000322897.11:ENST00000583367.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	27	188	2	1.41037	1.5254249999999998	1.64048	0.0192724	0.0039845	0.108861	0.057767
chr7	72829976	72830076	3329706	0	+	0.4	(0.378,0.408]	chr7	309527	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	SBDSP1	ENSG00000225648.6	ENST00000423945.5:ENST00000685034.1:ENST00000453858.2:ENST00000691023.1:ENST00000415772.5:ENST00000456312.5:ENST00000437201.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	7	53	2	1.39189	1.52505	1.65821	0.0751636	0.0506302	0.193731	0.17547
chr3	15057495	15057593	1619964	0	-	0.357143	(0.35,0.378]	chr3	167447	37	INTRON	INTRON	MRPS25	ENSG00000131368.9	ENST00000695375.1:ENST00000695376.1:ENST00000695377.1:ENST00000695378.1:ENST00000695379.1:ENST00000695380.1:ENST00000695381.1:ENST00000695382.1:ENST00000496484.2:ENST00000695334.1:ENST00000695384.1:ENST00000695322.1:ENST00000447299.2:ENST00000695383.1:ENST00000474866.2:ENST00000695385.1:ENST00000695386.1:ENST00000420267.6:ENST00000695387.1:ENST00000695388.1:ENST00000695389.1:ENST00000695390.1:ENST00000695391.1:ENST00000695392.1:ENST00000449354.7:ENST00000695393.1:ENST00000695394.1:ENST00000253686.7:ENST00000695395.1:ENST00000695323.1:ENST00000444840.6:ENST00000695396.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	86	2	1.36085	1.524965	1.68908	0.0446772	0.0301354	0.149888	0.142482
chr15	50561382	50561480	6171981	0	-	0.285714	(0.28,0.32]	chr15	588182	44	UTR3	UTR3:EXON_MRNA:INTRON	TRPM7	ENSG00000092439.16	ENST00000561267.5:ENST00000646667.1:ENST00000560955.5	protein_coding	protein_coding	protein_coding	protein_coding	10	90	2	1.51187	1.524925	1.53798	0.0598267	0.0287839	0.169278	0.140044
chr13	106558731	106558831	5648837	0	-	0.3	(0.28,0.32]	chr13	538150	17	EXON_MRNA	EXON_MRNA:INTRON	ARGLU1	ENSG00000134884.15	ENST00000400198.8:ENST00000472226.2:ENST00000375926.5:ENST00000360629.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	25	211	2	1.33688	1.52478	1.71268	0.017776	0.0132699	0.113415	0.094407
chr1	46299795	46299890	442882	0	-	0.515789	(0.515,0.57]	chr1	53649	16	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	LRRC41	ENSG00000132128.18	ENST00000617190.5:ENST00000343304.10:ENST00000615587.4:ENST00000472710.2:ENST00000498402.2:ENST00000469150.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	13	78	2	1.43443	1.524765	1.6151	0.0306384	0.0189412	0.131364	0.118428
chr16	22442730	22442830	6321994	0	+	0.47	(0.44,0.476]	chr16	605299	46	INTRON	INTRON	SMG1P1	ENSG00000237296.10	ENST00000446662.5:ENST00000381231.5:ENST00000309865.11:ENST00000691795.1:ENST00000308347.10:ENST00000687936.1:ENST00000691423.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	10	70	2	1.20796	1.5246499999999998	1.84134	0.0783119	0.0175428	0.197588	0.11319
chr15	30664609	30664708	5992667	0	+	0.363636	(0.35,0.378]	chr15	569767	54	INTRON	INTRON	ENSG00000284906:ENSG00000285035:ENSG00000187951	ENSG00000284906.3:ENSG00000285035.2:ENSG00000187951.11	ENST00000685924.1:ENST00000563110.6:ENST00000566548.5:ENST00000602616.6:ENST00000562954.1	protein_coding	protein_coding	protein_coding:lncRNA:transcribed_unprocessed_pseudogene	protein_coding:nonsense_mediated_decay:lncRNA:processed_transcript	12	93	2	1.35149	1.5245250000000001	1.69756	0.0544153	0.0149371	0.164972	0.107462
chr1	45660561	45660656	440327	0	-	0.357895	(0.35,0.378]	chr1	53358	5	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	GPBP1L1	ENSG00000159592.11	ENST00000290795.7:ENST00000355105.8:ENST00000488278.5:ENST00000480941.1:ENST00000480083.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	21	161	2	1.2844	1.52437	1.76434	0.0394482	0.00388926	0.143072	0.0568056
chr1	16349758	16349858	382593	0	-	0.54	(0.515,0.57]	chr1	44888	340	INTRON	INTRON	FBXO42	ENSG00000037637.11	ENST00000375592.8	protein_coding	protein_coding	protein_coding	protein_coding	12	72	2	1.43349	1.524295	1.6151	0.0378274	0.0189412	0.141117	0.118428
chr2	151803075	151803175	1243481	0	-	0.27	[0,0.28]	chr2	132027	44	UTR3	UTR3:EXON_MRNA	ARL5A:ENSG00000283228	ENSG00000162980.17:ENSG00000283228.1	ENST00000446896.7:ENST00000295087.13:ENST00000636024.1:ENST00000637224.1:ENST00000458140.6:ENST00000428992.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	105	2	1.28365	1.5242399999999998	1.76483	0.050017	0.0483	0.17488	0.153327
chr2	15532542	15532642	1072874	0	-	0.33	(0.32,0.35]	chr2	114441	208	INTRON	INTRON	NBAS	ENSG00000151779.13	ENST00000281513.10	protein_coding	protein_coding	protein_coding	protein_coding	13	96	2	1.31519	1.5241850000000001	1.73318	0.0462868	0.0314728	0.150684	0.144381
chr16	58161801	58161899	6494814	0	-	0.469388	(0.44,0.476]	chr16	628311	24	EXON_MRNA	EXON_MRNA:INTRON	CSNK2A2	ENSG00000070770.10	ENST00000262506.8:ENST00000565188.2:ENST00000566813.5:ENST00000676463.1:ENST00000677823.1:ENST00000567730.6:ENST00000563307.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	50	2	1.49942	1.52405	1.54868	0.0792118	0.0457575	0.199574	0.164677
chr6	35846792	35846891	3088061	0	-	0.444444	(0.44,0.476]	chr6	288820	38	INTRON	INTRON	SRPK1	ENSG00000096063.16	ENST00000373825.7:ENST00000423325.6:ENST00000346162.10:ENST00000361690.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	50	2	1.49942	1.52405	1.54868	0.0792118	0.0457575	0.199574	0.164677
chr2	112656125	112656224	852168	0	+	0.242424	[0,0.28]	chr2	95585	28	INTRON	INTRON	SLC20A1	ENSG00000144136.11	ENST00000272542.8:ENST00000498224.5:ENST00000433924.5:ENST00000456264.5:ENST00000413135.1:ENST00000480984.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	37	382	2	1.3227	1.52396	1.72522	0.0293477	0.00346701	0.128055	0.0539802
chr7	32874521	32874615	3515449	0	-	0.489362	(0.476,0.515]	chr7	327770	1	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	KBTBD2	ENSG00000170852.12	ENST00000304056.9:ENST00000485611.5:ENST00000477129.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	14	89	2	1.11649	1.52374	1.93099	0.0590085	0.0140312	0.189982	0.0959618
chr7	152404545	152404645	3680979	0	-	0.52	(0.515,0.57]	chr7	341660	455	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000682301.1:ENST00000452749.2:ENST00000680867.1:ENST00000683800.1:ENST00000684278.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	66	2	1.43219	1.5236450000000001	1.6151	0.0483322	0.0189412	0.153415	0.118428
chrX	151974069	151974169	7908635	0	-	0.5	(0.476,0.515]	chrX	804817	1	SS5_PROX	SS5_PROX:INTRON	GABRE	ENSG00000102287.19	ENST00000370328.4:ENST00000441219.5:ENST00000417300.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	34	234	2	1.39389	1.523535	1.65318	0.0122818	0.00378113	0.091087	0.0562562
chr16	84705554	84705651	6409956	0	+	0.412371	(0.408,0.44]	chr16	615262	3	INTRON	INTRON	USP10	ENSG00000103194.16	ENST00000562743.5:ENST00000540269.6:ENST00000563892.5:ENST00000562092.1:ENST00000569511.5:ENST00000219473.12:ENST00000564566.1:ENST00000570191.5:ENST00000563048.5:ENST00000562283.5:ENST00000563386.5:ENST00000569038.5:ENST00000570053.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	15	106	2	1.35953	1.52313	1.68673	0.0367385	0.011464	0.138959	0.0956037
chr18	12713755	12713854	6876017	0	+	0.434343	(0.408,0.44]	chr18	681236	6	INTRON	INTRON	PSMG2	ENSG00000128789.21	ENST00000585331.6:ENST00000586445.5:ENST00000590217.5:ENST00000586587.1:ENST00000317615.11	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	15	105	2	1.26791	1.5227	1.77749	0.0437893	0.0104439	0.14901	0.0902734
chr11	65441945	65442045	4805962	0	+	0.59	(0.57,1]	chr11	446554	193	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	86	289	2	1.27207	1.5225650000000002	1.77306	0.00428218	2.68333e-4	0.0598852	0.0150182
chr17	22092207	22092307	6578585	0	+	0.33	(0.32,0.35]	chr17	639556	9	INTRON	INTRON	UBBP4	ENSG00000263563.7	ENST00000648259.1:ENST00000688301.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	22	178	2	1.36279	1.522455	1.68212	0.0195438	0.0113559	0.120063	0.0886611
chr22	21866521	21866621	7561375	0	-	0.42	(0.408,0.44]	chr22	773388	583	INTRON	INTRON	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	45	310	2	1.33216	1.521945	1.71173	0.00955667	0.00292737	0.0863913	0.0482027
chr9	130765454	130765554	4214379	0	+	0.31	(0.28,0.32]	chr9	386427	506	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000393293.4	protein_coding	protein_coding	protein_coding	protein_coding	15	133	2	1.42757	1.5218150000000001	1.61606	0.0268974	0.024974	0.13265	0.123442
chr6	135218775	135218874	2962550	0	+	0.323232	(0.32,0.35]	chr6	278666	9	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	MYB	ENSG00000118513.20	ENST00000341911.10:ENST00000442647.7:ENST00000316528.12:ENST00000616088.4:ENST00000339290.9:ENST00000367812.6:ENST00000463282.6:ENST00000525477.5:ENST00000533837.5:ENST00000367814.8:ENST00000525369.5:ENST00000438901.6:ENST00000525514.5:ENST00000526320.5:ENST00000526889.5:ENST00000529586.5:ENST00000531519.5:ENST00000533808.5:ENST00000531845.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	22	181	2	1.36402	1.52163	1.67924	0.0267097	0.00727949	0.123349	0.0759583
chr5	44816840	44816940	2352081	0	+	0.33	(0.32,0.35]	chr5	226956	5	EXON_LNCRNA	EXON_LNCRNA	MRPS30	ENSG00000112996.11	ENST00000230914.4	protein_coding	processed_transcript	protein_coding	processed_transcript	10	82	2	1.36611	1.5214949999999998	1.67688	0.0483152	0.0361676	0.172011	0.138959
chr1	150577585	150577679	551067	0	-	0.404255	(0.378,0.408]	chr1	64764	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	MCL1	ENSG00000143384.14	ENST00000678770.1:ENST00000678610.1:ENST00000464132.2:ENST00000620947.4:ENST00000369026.3:ENST00000676522.1:ENST00000307940.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	58	2	1.45934	1.5214150000000002	1.58349	0.0653091	0.0442931	0.180158	0.162302
chr5	54035907	54036007	2618163	0	-	0.39	(0.378,0.408]	chr5	248835	1239	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	58	2	1.45934	1.5214150000000002	1.58349	0.0653091	0.0442931	0.180158	0.162302
chr4	48346217	48346316	1957069	0	+	0.393939	(0.378,0.408]	chr4	196116	37	INTRON	INTRON	SLAIN2	ENSG00000109171.15	ENST00000264313.11	protein_coding	protein_coding	protein_coding	protein_coding	7	52	2	1.51223	1.521375	1.53052	0.0744544	0.051139	0.192012	0.176696
chr1	193089936	193090034	284580	0	+	0.530612	(0.515,0.57]	chr1	32726	51	UTR3	UTR3:EXON_MRNA:INTRON	RO60	ENSG00000116747.13	ENST00000432079.5:ENST00000400968.7:ENST00000367443.5:ENST00000367444.7:ENST00000367445.7	protein_coding	protein_coding	protein_coding	protein_coding	14	87	2	1.2325	1.5213700000000001	1.81024	0.0576823	0.00698177	0.188193	0.0718189
chr2	107726846	107726946	1205818	0	-	0.29	(0.28,0.32]	chr2	128532	92	INTRON	INTRON	LINC01885:ENSG00000286769	ENSG00000237880.2:ENSG00000286769.1	ENST00000654481.1:ENST00000669817.1	lncRNA	lncRNA	lncRNA	lncRNA	9	82	2	1.47775	1.52128	1.56481	0.0653002	0.0339805	0.180158	0.146815
chr1	145993566	145993661	541079	0	-	0.431579	(0.408,0.44]	chr1	63465	13	UTR3	UTR3:EXON_MRNA	TXNIP	ENSG00000265972.6	ENST00000582401.6:ENST00000488537.1:ENST00000486597.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	23	160	2	1.35953	1.521185	1.68284	0.0367385	0.00320279	0.138959	0.0521785
chr4	126560909	126561009	2236318	0	-	0.32	(0.28,0.32]	chr4	219023	954	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	8	66	2	1.27925	1.52109	1.76293	0.0766478	0.0642509	0.19963	0.196164
chr1	246326763	246326850	678908	0	-	0.264368	[0,0.28]	chr1	79749	1	EXON_LNCRNA	EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000453676.5:ENST00000462422.5:ENST00000403792.7:ENST00000470863.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	114	2	1.23334	1.521035	1.80873	0.0765485	0.0234525	0.196164	0.128429
chr22	49600059	49600159	7602081	0	-	0.62	(0.57,1]	chr22	778570	44	INTRON	INTRON	MIR3667HG	ENSG00000188511.13	ENST00000414287.5:ENST00000416411.1:ENST00000689875.1	lncRNA	lncRNA	lncRNA	lncRNA	11	40	2	1.3512	1.52069	1.69018	0.0618425	0.0143258	0.174429	0.104177
chr11	86056569	86056669	5014718	0	-	0.35	(0.32,0.35]	chr11	473022	246	INTRON	INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000630913.2:ENST00000528398.5:ENST00000356360.9:ENST00000534412.5:ENST00000531558.1:ENST00000531930.5:ENST00000532041.5:ENST00000525162.5:ENST00000528256.1:ENST00000528411.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	13	108	2	1.30365	1.520655	1.73766	0.0773448	0.008138	0.196285	0.0810802
chr7	128749601	128749700	3408483	0	+	0.363636	(0.35,0.378]	chr7	318435	4	INTRON	INTRON	CALU	ENSG00000128595.17	ENST00000535011.6:ENST00000542996.6:ENST00000249364.9:ENST00000449187.6:ENST00000479257.5	protein_coding	protein_coding	protein_coding	protein_coding	11	85	2	1.25787	1.5206	1.78333	0.0708442	0.0148511	0.184617	0.106937
chr10	46798368	46798468	4430840	0	+	0.39	(0.378,0.408]	chr10	408537	2	SS5_PROX	SS5_PROX:INTRON	BMS1P1	ENSG00000204177.11	ENST00000580094.5:ENST00000690946.1:ENST00000688259.1:ENST00000685496.1:ENST00000374336.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	8	61	2	1.44787	1.5205199999999999	1.59317	0.0603812	0.0496837	0.19151	0.156383
chr12	68614152	68614252	5161237	0	+	0.33	(0.32,0.35]	chr12	488573	27	INTRON	INTRON	RAP1B	ENSG00000127314.18	ENST00000460800.5:ENST00000393436.9:ENST00000250559.14:ENST00000425247.6:ENST00000501412.2:ENST00000450214.6:ENST00000463493.5:ENST00000537460.5:ENST00000341355.9:ENST00000538283.5:ENST00000541167.5:ENST00000422358.6:ENST00000489473.6:ENST00000545270.5:ENST00000538980.5:ENST00000543393.5:ENST00000542018.5:ENST00000540209.5:ENST00000378985.7:ENST00000453560.6:ENST00000534899.5:ENST00000542145.5:ENST00000539091.5:ENST00000535492.5:ENST00000540781.5:ENST00000485252.6:ENST00000538877.5:ENST00000541386.5:ENST00000543697.5:ENST00000545720.6:ENST00000541216.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	11	90	2	1.42542	1.5204849999999999	1.61555	0.0718205	0.0165587	0.187046	0.110511
chr6	159680503	159680602	3253740	0	-	0.232323	[0,0.28]	chr6	302436	116	UTR3	UTR3:EXON_MRNA:INTRON	SOD2	ENSG00000112096.19	ENST00000538183.7:ENST00000546260.5:ENST00000367055.8:ENST00000367054.6:ENST00000546087.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	14	147	2	1.47972	1.520225	1.56073	0.0388233	0.0236362	0.143072	0.129075
chr22	20127127	20127203	7478695	0	+	0.263158	[0,0.28]	chr22	762808	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	RANBP1	ENSG00000099901.17	ENST00000435265.5:ENST00000430524.6:ENST00000402752.5:ENST00000331821.7:ENST00000448394.2:ENST00000486575.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	44	454	2	1.5083	1.5199799999999999	1.53166	0.0137298	0.00702426	0.0949306	0.0754576
chr6	57107934	57108033	2878237	0	+	0.535354	(0.515,0.57]	chr6	273248	60	UTR3	UTR3:EXON_MRNA:INTRON	ZNF451	ENSG00000112200.17	ENST00000515290.5:ENST00000510483.5:ENST00000357489.7:ENST00000370708.8:ENST00000370702.5:ENST00000444273.6:ENST00000370711.9:ENST00000370706.9:ENST00000491832.6:ENST00000502749.1:ENST00000504603.1:ENST00000509071.5:ENST00000509251.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	61	2	1.47127	1.519825	1.56838	0.0424458	0.0333563	0.161763	0.134145
chr20	62924441	62924540	7362434	0	-	0.434343	(0.408,0.44]	chr20	751210	97	INTRON	INTRON	DIDO1	ENSG00000101191.17	ENST00000266070.8:ENST00000395343.6:ENST00000395340.5:ENST00000370371.8:ENST00000370368.5:ENST00000354665.8	protein_coding	protein_coding	protein_coding	protein_coding	13	95	2	1.42102	1.5198	1.61858	0.0389354	0.0175559	0.160836	0.105143
chr3	50112063	50112128	1424736	0	+	0.384615	(0.378,0.408]	chr3	150191	1	EXON_LNCRNA	EXON_LNCRNA:INTRON	RBM5	ENSG00000003756.17	ENST00000347869.8:ENST00000464087.6:ENST00000441812.6:ENST00000474470.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	14	99	2	1.48911	1.51974	1.55037	0.0365151	0.0174154	0.138959	0.11265
chr8	26294654	26294752	3716125	0	+	0.428571	(0.408,0.44]	chr8	345364	4	INTRON	INTRON	PPP2R2A	ENSG00000221914.11	ENST00000380737.8:ENST00000520329.5:ENST00000518254.5:ENST00000524169.5:ENST00000518397.5:ENST00000522535.5:ENST00000665949.1:ENST00000522150.5:ENST00000523473.5:ENST00000521095.5:ENST00000660435.1:ENST00000523925.5:ENST00000524099.5:ENST00000315985.7:ENST00000519636.5:ENST00000522482.5:ENST00000521557.5:ENST00000519439.5:ENST00000521484.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	18	107	2	1.03094	1.5196800000000001	2.00842	0.0581198	0.0108512	0.188651	0.0873034
chr21	37371614	37371713	7406269	0	+	0.292929	(0.28,0.32]	chr21	754846	31	INTRON	INTRON	DYRK1A	ENSG00000157540.22	ENST00000646523.1:ENST00000647425.1:ENST00000647188.2:ENST00000647504.1:ENST00000644942.1:ENST00000338785.8:ENST00000643624.1:ENST00000643551.1:ENST00000426672.6	protein_coding	protein_coding	protein_coding	protein_coding	18	161	2	1.44898	1.519435	1.58989	0.0328057	0.0116165	0.133816	0.0962115
chr1	162524843	162524943	238269	0	+	0.36	(0.35,0.378]	chr1	28688	24	UTR3	UTR3:EXON_MRNA	UHMK1	ENSG00000152332.16	ENST00000545294.5:ENST00000538489.5:ENST00000489294.2	protein_coding	protein_coding	protein_coding	protein_coding	27	205	2	1.34468	1.519395	1.69411	0.0247573	0.00371186	0.12011	0.0561984
chr7	152376963	152377063	3680703	0	-	0.4	(0.378,0.408]	chr7	341660	179	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000682301.1:ENST00000452749.2:ENST00000680867.1:ENST00000683800.1:ENST00000684278.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	78	2	1.35931	1.519365	1.67942	0.0393907	0.0336706	0.161534	0.134145
chr11	65423372	65423471	4805776	0	+	0.707071	(0.57,1]	chr11	446554	7	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NEAT1	ENSG00000245532.10	ENST00000499732.3:ENST00000687132.1:ENST00000501122.2:ENST00000685861.1:ENST00000601801.3:ENST00000612303.2:ENST00000670617.1:ENST00000646243.1:ENST00000645023.1	lncRNA	lncRNA	lncRNA	lncRNA	145	503	2	1.46098	1.5192700000000001	1.57756	9.38495e-4	4.08224e-4	0.0280055	0.0185763
chr9	131452086	131452186	4217560	0	+	0.27	[0,0.28]	chr9	386766	39	INTRON	INTRON	PRRC2B	ENSG00000288701.1	ENST00000684596.1:ENST00000683519.1:ENST00000682501.1	protein_coding	protein_coding	protein_coding	protein_coding	11	115	2	1.51089	1.51924	1.52759	0.0484383	0.0339857	0.153635	0.146815
chr16	31186610	31186705	6340625	0	+	0.431579	(0.408,0.44]	chr16	608337	16	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	FUS	ENSG00000089280.19	ENST00000566605.5:ENST00000254108.12:ENST00000380244.7:ENST00000487509.6:ENST00000568685.1:ENST00000570090.1:ENST00000474990.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	27	189	2	1.48817	1.51919	1.55021	0.00989494	0.0092278	0.0855292	0.0838372
chr12	68660077	68660177	5161718	0	+	0.36	(0.35,0.378]	chr12	488638	9	UTR3	UTR3:EXON_MRNA	RAP1B	ENSG00000127314.18	ENST00000393436.9:ENST00000250559.14:ENST00000450214.6	protein_coding	protein_coding	protein_coding	protein_coding	7	56	2	1.44934	1.51898	1.58862	0.0658369	0.0615516	0.193423	0.181518
chr17	16441553	16441646	6562674	0	+	0.387097	(0.378,0.408]	chr17	637923	3	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	SNHG29	ENSG00000175061.19	ENST00000475947.7:ENST00000584177.5:ENST00000487066.6:ENST00000580180.6:ENST00000660020.1:ENST00000665646.1:ENST00000481898.6:ENST00000660419.1:ENST00000668333.1:ENST00000667979.2:ENST00000663781.1:ENST00000664939.1:ENST00000491009.6:ENST00000583400.7:ENST00000654778.1:ENST00000497774.6:ENST00000669136.1:ENST00000659884.1:ENST00000582911.6:ENST00000666215.2:ENST00000580770.5:ENST00000581718.6:ENST00000579473.6:ENST00000581361.5:ENST00000692724.1:ENST00000689691.1:ENST00000686699.1:ENST00000483140.7:ENST00000477249.7:ENST00000484836.2:ENST00000655540.1:ENST00000475953.6:ENST00000470491.7:ENST00000480811.6:ENST00000662869.1:ENST00000671170.1:ENST00000658116.2:ENST00000685971.1:ENST00000689483.1:ENST00000688805.1:ENST00000692720.1:ENST00000653954.1:ENST00000584926.5:ENST00000654561.1:ENST00000581913.5:ENST00000481027.5:ENST00000472367.5:ENST00000483588.2:ENST00000478103.6:ENST00000460249.5:ENST00000658943.1:ENST00000690854.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	433	3163	2	1.48189	1.518935	1.55598	0.00186124	0.00144552	0.0390395	0.0348662
chrX	136869564	136869659	7897568	0	-	0.378947	(0.378,0.408]	chrX	804140	5	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	RBMX	ENSG00000147274.14	ENST00000561733.5:ENST00000431446.7:ENST00000496459.2:ENST00000568578.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	24	158	2	1.10411	1.518885	1.93366	0.0383991	0.00519245	0.158923	0.0633615
chr21	14497563	14497657	7427709	0	-	0.308511	(0.28,0.32]	chr21	757726	8	INTRON	INTRON	SAMSN1	ENSG00000155307.19	ENST00000647101.1:ENST00000644288.1:ENST00000400564.5:ENST00000400566.6:ENST00000285670.7:ENST00000619120.4:ENST00000463807.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	109	2	1.38578	1.51879	1.6518	0.0537519	0.0193817	0.163832	0.119831
chr3	197266016	197266116	1903185	0	-	0.44	(0.408,0.44]	chr3	190664	54	INTRON	INTRON	DLG1	ENSG00000075711.21	ENST00000667157.1:ENST00000346964.6:ENST00000663148.1:ENST00000655488.1:ENST00000357674.9:ENST00000671185.1:ENST00000658701.1:ENST00000667104.1:ENST00000661336.1:ENST00000669565.1:ENST00000670455.1:ENST00000656087.1:ENST00000661453.1:ENST00000664564.1:ENST00000660432.1:ENST00000660898.1:ENST00000657381.1:ENST00000659221.1:ENST00000654737.1:ENST00000659716.1:ENST00000664991.1:ENST00000419354.5:ENST00000661440.1:ENST00000667971.1:ENST00000670935.1:ENST00000666007.1:ENST00000661229.1:ENST00000661013.1:ENST00000436682.6:ENST00000662727.1:ENST00000422288.6:ENST00000448528.6:ENST00000656944.1:ENST00000392382.6:ENST00000450955.5:ENST00000419227.5:ENST00000392381.7:ENST00000471733.5:ENST00000419553.6:ENST00000456699.6:ENST00000392380.6:ENST00000485409.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	65	2	1.43388	1.5186600000000001	1.60344	0.0509486	0.0387506	0.160156	0.157123
chr20	47256709	47256808	7348500	0	-	0.464646	(0.44,0.476]	chr20	749282	69	INTRON	INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000467200.6:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000468376.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	63	2	1.28061	1.51844	1.75627	0.0639824	0.0380723	0.177882	0.157702
chr6	10928550	10928650	2812181	0	+	0.45	(0.44,0.476]	chr6	264643	1	SS5_PROX	SS5_PROX:INTRON	SYCP2L	ENSG00000153157.13	ENST00000341041.8:ENST00000283141.11:ENST00000543878.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	66	2	1.43625	1.51829	1.60033	0.063142	0.030306	0.197183	0.130104
chr6	27125896	27125983	3072295	0	-	0.356322	(0.35,0.378]	chr6	285570	1	UTR3	UTR3:EXON_MRNA	H2BC11	ENSG00000124635.9	ENST00000607124.1	protein_coding	protein_coding	protein_coding	protein_coding	27	204	2	1.46823	1.5181749999999998	1.56812	0.0113153	0.00991339	0.0886121	0.0877296
chr4	82836058	82836158	2179520	0	-	0.52	(0.515,0.57]	chr4	214267	47	INTRON	INTRON	SEC31A	ENSG00000138674.17	ENST00000395310.7:ENST00000513858.5:ENST00000348405.8:ENST00000503937.5:ENST00000448323.5:ENST00000311785.11:ENST00000509142.5:ENST00000443462.6:ENST00000500777.6:ENST00000505472.5:ENST00000355196.6:ENST00000508502.5:ENST00000264405.9:ENST00000505984.5:ENST00000511338.1:ENST00000515749.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	16	87	2	1.34923	1.5180500000000001	1.68687	0.0300837	0.0193076	0.129186	0.119831
chr6	75648500	75648599	2905422	0	+	0.262626	[0,0.28]	chr6	274530	3	INTRON	INTRON	SENP6	ENSG00000112701.18	ENST00000370010.6:ENST00000447266.7:ENST00000327284.12:ENST00000483859.6:ENST00000424947.6:ENST00000436928.7:ENST00000485497.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	82	2	1.40573	1.51782	1.62991	0.0671202	0.0578123	0.188564	0.183051
chr12	131737525	131737625	5249358	0	+	0.47	(0.44,0.476]	chr12	499173	87	INTRON	INTRON	SFSWAP	ENSG00000061936.10	ENST00000261674.9:ENST00000538548.5:ENST00000535236.5:ENST00000541286.5:ENST00000535202.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	79	2	1.4962	1.51777	1.53934	0.0392301	0.0286379	0.161534	0.126977
chr2	15515548	15515648	1072704	0	-	0.28	[0,0.28]	chr2	114441	38	INTRON	INTRON	NBAS	ENSG00000151779.13	ENST00000281513.10	protein_coding	protein_coding	protein_coding	protein_coding	10	105	2	1.35418	1.51776	1.68134	0.0757936	0.0251592	0.194427	0.133479
chr2	27620453	27620552	718320	0	+	0.444444	(0.44,0.476]	chr2	83413	25	INTRON	INTRON	ZNF512	ENSG00000243943.10	ENST00000413371.6:ENST00000416005.6:ENST00000556601.5:ENST00000379717.5:ENST00000355467.6:ENST00000488055.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	64	2	1.38203	1.5175	1.65297	0.058781	0.0331814	0.167915	0.145918
chr6	147780138	147780238	2991800	0	+	0.3	(0.28,0.32]	chr6	280177	427	INTRON	INTRON	ENSG00000227681	ENSG00000227681.5	ENST00000427015.1	lncRNA	lncRNA	lncRNA	lncRNA	9	82	2	1.45717	1.51748	1.57779	0.0502605	0.0472947	0.16913	0.156383
chr16	90215687	90215786	6425051	0	+	0.454545	(0.44,0.476]	chr16	617275	5	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	LINC02193	ENSG00000260923.7	ENST00000568418.1:ENST00000656587.1:ENST00000668099.1:ENST00000569162.2:ENST00000665776.1:ENST00000669853.1:ENST00000668039.1:ENST00000658135.1:ENST00000663101.1:ENST00000663757.1:ENST00000568947.2:ENST00000568739.6	lncRNA	lncRNA	lncRNA	lncRNA	19	132	2	1.50172	1.517455	1.53319	0.0167976	0.0139907	0.103416	0.102514
chr5	39048822	39048922	2605392	0	-	0.38	(0.378,0.408]	chr5	247896	273	INTRON	INTRON	RICTOR	ENSG00000164327.13	ENST00000357387.8:ENST00000511516.5:ENST00000296782.9:ENST00000510711.5:ENST00000513566.1:ENST00000514735.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	58	2	1.50417	1.5173450000000002	1.53052	0.0744544	0.0384675	0.192012	0.159169
chr1	229546801	229546899	653651	0	-	0.418367	(0.408,0.44]	chr1	77476	41	INTRON	INTRON	ABCB10	ENSG00000135776.5	ENST00000344517.5	protein_coding	protein_coding	protein_coding	protein_coding	8	57	2	1.27662	1.517265	1.75791	0.0787183	0.0378795	0.198567	0.157034
chr22	45334077	45334174	7530391	0	+	0.391753	(0.378,0.408]	chr22	769981	10	INTRON	INTRON	FAM118A	ENSG00000100376.12	ENST00000216214.7:ENST00000441876.7:ENST00000487732.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	60	2	1.51223	1.51721	1.52219	0.0531838	0.051139	0.176696	0.162538
chr2	242149991	242150091	1057358	0	+	0.43	(0.408,0.44]	chr2	112769	95	INTRON	INTRON	LINC01881	ENSG00000220804.10	ENST00000692555.1:ENST00000622435.4:ENST00000614114.4:ENST00000682782.1:ENST00000683938.1:ENST00000682139.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	7	51	2	1.40374	1.5171700000000001	1.6306	0.0721345	0.0544158	0.187433	0.182272
chr1	55162764	55162861	465370	0	-	0.319588	(0.28,0.32]	chr1	56254	1	INTRON	INTRON	USP24	ENSG00000162402.14	ENST00000294383.7	protein_coding	protein_coding	protein_coding	protein_coding	7	64	2	1.47299	1.5171649999999999	1.56134	0.0740624	0.0597769	0.191153	0.189982
chr5	181315139	181315237	2563751	0	+	0.520408	(0.515,0.57]	chr5	245358	8	INTRON	INTRON	ENSG00000238035	ENSG00000238035.8	ENST00000499986.8	lncRNA	lncRNA	lncRNA	lncRNA	9	54	2	1.49552	1.516985	1.53845	0.0475376	0.0385038	0.159277	0.153019
chr10	73057678	73057778	4647449	0	-	0.32	(0.28,0.32]	chr10	427530	37	INTRON	INTRON	P4HA1	ENSG00000122884.13	ENST00000394890.7:ENST00000307116.6:ENST00000373008.6:ENST00000440381.5:ENST00000263556.3	protein_coding	protein_coding	protein_coding	protein_coding	13	109	2	1.21855	1.5167350000000002	1.81492	0.0509549	0.0253829	0.176446	0.12011
chr7	32487163	32487260	3513463	0	-	0.28866000000000003	(0.28,0.32]	chr7	327611	20	UTR3	UTR3:EXON_MRNA	LSM5	ENSG00000106355.10	ENST00000450169.7:ENST00000409909.7:ENST00000409292.5:ENST00000223084.7:ENST00000409987.5:ENST00000410044.5:ENST00000468872.5:ENST00000409782.5:ENST00000409952.3:ENST00000480956.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	16	134	2	1.10188	1.516655	1.93143	0.0615396	0.0121651	0.193423	0.0910127
chr9	92254039	92254137	4286926	0	-	0.479592	(0.476,0.515]	chr9	394155	7	EXON_MRNA	EXON_MRNA:INTRON	IARS1	ENSG00000196305.19	ENST00000375643.7:ENST00000443024.7:ENST00000447699.7:ENST00000683537.1:ENST00000684726.1:ENST00000683192.1:ENST00000683565.1:ENST00000682756.1:ENST00000684542.1:ENST00000683793.1:ENST00000683817.1:ENST00000682141.1:ENST00000682893.1:ENST00000684557.1:ENST00000498025.2:ENST00000682156.1:ENST00000627121.3:ENST00000683469.1:ENST00000683495.1:ENST00000682578.1:ENST00000682533.1:ENST00000472894.2:ENST00000684757.1:ENST00000684445.1:ENST00000683376.1:ENST00000683679.1:ENST00000683119.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	27	175	2	1.23169	1.516605	1.80152	0.0216481	0.00539538	0.123836	0.0644048
chr9	131141499	131141598	4215787	0	+	0.555556	(0.515,0.57]	chr9	386554	9	EXON_MRNA	EXON_MRNA:INTRON	NUP214	ENSG00000126883.19	ENST00000695497.1:ENST00000695498.1:ENST00000695496.1:ENST00000695495.1:ENST00000695494.1:ENST00000695493.1:ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000525561.2:ENST00000651022.1:ENST00000695499.1:ENST00000530863.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	19	109	2	1.18041	1.5165950000000001	1.85278	0.0402001	0.00514125	0.143993	0.064995
chr5	10400283	10400383	2318125	0	+	0.39	(0.378,0.408]	chr5	224669	1	SS3_PROX	SS3_PROX:INTRON	MARCHF6	ENSG00000145495.16	ENST00000274140.10:ENST00000449913.6:ENST00000511802.5:ENST00000503788.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	13	88	2	1.14593	1.5165449999999998	1.88716	0.0597023	0.017192	0.189982	0.104099
chr21	46189317	46189416	7470460	0	-	0.525253	(0.515,0.57]	chr21	761438	6	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	LSS	ENSG00000160285.15	ENST00000356396.8:ENST00000397728.8:ENST00000491729.1:ENST00000419093.5:ENST00000457828.6:ENST00000474319.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	44	256	2	1.43843	1.516485	1.59454	0.00707325	0.00248146	0.0720833	0.0460771
chr11	66640434	66640529	4811047	0	+	0.410526	(0.408,0.44]	chr11	447892	3	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	RBM14-RBM4:RBM4	ENSG00000248643.5:ENSG00000173933.21	ENST00000412278.2:ENST00000421355.1:ENST00000500635.2:ENST00000396053.9:ENST00000408993.6:ENST00000578778.5:ENST00000398692.8:ENST00000483858.5:ENST00000310092.12:ENST00000510173.6:ENST00000528039.5:ENST00000506523.6:ENST00000530235.1:ENST00000409406.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	16	113	2	1.50217	1.51648	1.53079	0.022351	0.0173197	0.116768	0.112111
chr18	9590625	9590722	6946074	0	-	0.360825	(0.35,0.378]	chr18	687020	14	INTRON	INTRON	PPP4R1	ENSG00000154845.16	ENST00000400555.7:ENST00000400556.8:ENST00000285124.12:ENST00000580583.5:ENST00000578875.5:ENST00000578178.5:ENST00000583903.5:ENST00000579638.5:ENST00000584074.5:ENST00000579415.5:ENST00000581250.5:ENST00000580745.5:ENST00000582933.5:ENST00000580182.5:ENST00000582240.5:ENST00000581835.1:ENST00000583092.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	11	82	2	1.38936	1.516325	1.64329	0.0384351	0.0361852	0.152746	0.142316
chr7	123548889	123548988	3631879	0	-	0.262626	[0,0.28]	chr7	337500	22	EXON_MRNA	EXON_MRNA:INTRON	NDUFA5	ENSG00000128609.16	ENST00000355749.7:ENST00000471770.5:ENST00000678090.1:ENST00000679163.1:ENST00000676614.1:ENST00000677251.1:ENST00000676730.1:ENST00000677306.1:ENST00000676516.1:ENST00000677391.1:ENST00000677264.1:ENST00000611607.4:ENST00000618945.4:ENST00000492549.6:ENST00000678032.1:ENST00000679052.1:ENST00000467117.6:ENST00000677134.1:ENST00000378795.9:ENST00000470123.2:ENST00000466896.5:ENST00000678251.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	103	2	1.49535	1.516175	1.537	0.0670881	0.0312625	0.183051	0.14427
chr18	36169655	36169748	6891849	0	+	0.516129	(0.515,0.57]	chr18	683076	2	SS3_PROX	SS3_PROX:INTRON	ELP2	ENSG00000134759.14	ENST00000351393.10:ENST00000442325.6:ENST00000358232.11:ENST00000423854.6:ENST00000539560.5:ENST00000350494.10:ENST00000542824.5:ENST00000540766.5:ENST00000545302.5:ENST00000541748.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	20	111	2	1.38469	1.515655	1.64662	0.0178544	0.0135089	0.106151	0.101363
chr2	181918099	181918199	937224	0	+	0.35	(0.32,0.35]	chr2	102725	12	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	ITPRID2	ENSG00000138434.17	ENST00000431877.7:ENST00000320370.11:ENST00000409001.5:ENST00000440623.5:ENST00000454579.5:ENST00000416081.5:ENST00000491720.5:ENST00000409136.5:ENST00000491866.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	75	2	1.42176	1.5155750000000001	1.60939	0.0511006	0.0439266	0.176696	0.14937
chr1	93121789	93121888	162977	0	+	0.444444	(0.44,0.476]	chr1	17612	5	INTRON	INTRON	MTF2	ENSG00000143033.18	ENST00000540243.5:ENST00000545708.5:ENST00000370298.9:ENST00000471953.5:ENST00000370303.4:ENST00000467953.5:ENST00000497976.5:ENST00000476037.5:ENST00000487263.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	77	2	1.49531	1.515555	1.5358	0.0421587	0.0263135	0.148082	0.133676
chr7	2367830	2367925	3269763	0	+	0.357895	(0.35,0.378]	chr7	303838	4	INTRON	INTRON	EIF3B	ENSG00000106263.19	ENST00000360876.9:ENST00000397011.2:ENST00000466199.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	31	226	2	1.45023	1.515485	1.58074	0.0119605	0.00768931	0.0899583	0.0782639
chr4	63646	63746	1905393	0	+	0.52	(0.515,0.57]	chr4	191003	31	INTRON	INTRON	ZNF595	ENSG00000272602.6	ENST00000608255.2:ENST00000609518.5:ENST00000509152.3:ENST00000610261.6	protein_coding	protein_coding	protein_coding	protein_coding	33	195	2	1.48717	1.51545	1.54373	0.00657369	0.00636057	0.0724173	0.0701901
chr3	6529236	6529336	1356533	0	+	0.36	(0.35,0.378]	chr3	142508	161	INTRON	INTRON	ENSG00000189229	ENSG00000189229.12	ENST00000660158.1:ENST00000433639.1:ENST00000655754.1:ENST00000653839.1:ENST00000662846.1:ENST00000659876.1:ENST00000414438.2:ENST00000658468.1:ENST00000414603.1:ENST00000669512.1:ENST00000667028.1:ENST00000655541.1:ENST00000668643.1:ENST00000671568.1:ENST00000671036.1:ENST00000669798.1:ENST00000655753.1:ENST00000655856.1:ENST00000658398.1:ENST00000661518.1:ENST00000661279.1:ENST00000655495.1:ENST00000663041.1:ENST00000659827.1:ENST00000667716.1:ENST00000662508.1:ENST00000668416.1:ENST00000658133.1:ENST00000659651.1:ENST00000342990.4:ENST00000660054.1:ENST00000671370.1	lncRNA	lncRNA	lncRNA	lncRNA	13	101	2	1.35596	1.5154450000000002	1.67493	0.0404607	0.0192907	0.161534	0.108861
chr17	27310924	27311008	6580712	0	+	0.559524	(0.515,0.57]	chr17	639640	4	INTRON	INTRON	WSB1	ENSG00000109046.15	ENST00000467843.6:ENST00000262394.7:ENST00000348811.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	53	2	1.49871	1.515255	1.5318	0.0770828	0.0258209	0.196285	0.133676
chr7	12355165	12355254	3484926	0	-	0.539326	(0.515,0.57]	chr7	325868	3	INTRON	INTRON	VWDE	ENSG00000146530.15	ENST00000275358.8:ENST00000452576.6:ENST00000521169.5:ENST00000644150.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	60	2	1.38593	1.51504	1.64415	0.0554883	0.0231656	0.165463	0.127036
chr15	64471725	64471825	6044199	0	+	0.5	(0.476,0.515]	chr15	575688	105	INTRON	INTRON	ZNF609	ENSG00000180357.10	ENST00000326648.5:ENST00000416172.1	protein_coding	protein_coding	protein_coding	protein_coding	8	56	2	1.28655	1.51486	1.74317	0.075974	0.0396373	0.194842	0.161534
chr19	17342263	17342357	7030074	0	+	0.510638	(0.476,0.515]	chr19	700039	7	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	GTPBP3	ENSG00000130299.17	ENST00000598038.5:ENST00000324894.13:ENST00000600625.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	63	2	1.48272	1.514505	1.54629	0.0484352	0.0410274	0.161534	0.153635
chr19	15319738	15319838	7147278	0	-	0.46	(0.44,0.476]	chr19	721965	394	INTRON	INTRON	BRD4	ENSG00000141867.19	ENST00000679869.1:ENST00000360016.9:ENST00000594841.5:ENST00000597315.5:ENST00000601941.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	77	2	1.24474	1.514485	1.78423	0.070785699999999993	0.0143065	0.184528	0.104058
chr5	131681269	131681369	2719576	0	-	0.35	(0.32,0.35]	chr5	255672	17	INTRON	INTRON	FNIP1	ENSG00000217128.13	ENST00000510461.6:ENST00000307954.12:ENST00000307968.11:ENST00000511848.1	protein_coding	protein_coding	protein_coding	protein_coding	15	123	2	1.33306	1.5144549999999999	1.69585	0.0593533	0.00800998	0.168806	0.0801816
chr7	26202699	26202789	3292371	0	+	0.422222	(0.408,0.44]	chr7	305838	2	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CBX3	ENSG00000122565.19	ENST00000337620.8:ENST00000396386.7:ENST00000456948.5:ENST00000409747.5:ENST00000497498.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	64	2	1.27662	1.5142600000000002	1.7519	0.0787183	0.0239555	0.198567	0.129259
chr20	50908999	50909099	7355653	0	-	0.39	(0.378,0.408]	chr20	750096	1	SS5_PROX	SS5_PROX:INTRON	ADNP	ENSG00000101126.18	ENST00000621696.5:ENST00000673732.1:ENST00000396029.8:ENST00000644386.1:ENST00000396032.8:ENST00000349014.8:ENST00000645081.1:ENST00000642364.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	17	118	2	1.20853	1.5141300000000002	1.81973	0.0393968	0.0108435	0.161534	0.0873034
chr10	68070599	68070699	4637902	0	-	0.22	[0,0.28]	chr10	426443	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	HERC4	ENSG00000148634.16	ENST00000373700.9:ENST00000412272.6:ENST00000395198.7:ENST00000473533.6:ENST00000427635.6:ENST00000513996.5:ENST00000395185.7:ENST00000505760.5:ENST00000492996.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	10	103	2	1.46548	1.514065	1.56265	0.0721311	0.0287651	0.187433	0.139973
chr22	49656268	49656366	7602651	0	-	0.663265	(0.57,1]	chr22	778596	2	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	MIR3667HG	ENSG00000188511.13	ENST00000414287.5:ENST00000416411.1:ENST00000689875.1:ENST00000400023.5:ENST00000405854.5:ENST00000685521.1:ENST00000691957.1:ENST00000692970.1:ENST00000689829.1:ENST00000685602.1:ENST00000691490.1:ENST00000692246.1:ENST00000685056.1:ENST00000688300.1:ENST00000684932.1:ENST00000692989.1:ENST00000692092.1:ENST00000686856.1:ENST00000689311.1	lncRNA	lncRNA	lncRNA	lncRNA	10	36	2	1.4039	1.514055	1.62421	0.0408599	0.0376752	0.156361	0.1451
chr7	73481946	73482045	3554691	0	-	0.59596	(0.57,1]	chr7	330783	30	INTRON	INTRON	BAZ1B	ENSG00000009954.11	ENST00000339594.9:ENST00000404251.1	protein_coding	protein_coding	protein_coding	protein_coding	10	36	2	1.4039	1.514055	1.62421	0.0408599	0.0376752	0.156361	0.1451
chr16	85564555	85564655	6415477	0	+	0.62	(0.57,1]	chr16	615470	78	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	10	34	2	1.28607	1.51396	1.74185	0.0504184	0.0401765	0.174922	0.143911
chr22	21861423	21861523	7561324	0	-	0.44	(0.408,0.44]	chr22	773388	532	INTRON	INTRON	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	7	50	2	1.49523	1.51393	1.53263	0.0733439	0.0534846	0.190051	0.180041
chr7	139373028	139373125	3437721	0	+	0.268041	[0,0.28]	chr7	320325	12	INTRON	INTRON	LUC7L2:FMC1-LUC7L2	ENSG00000146963.18:ENSG00000269955.2	ENST00000541170.7:ENST00000541515.3:ENST00000608368.5:ENST00000619796.4:ENST00000354926.9:ENST00000435096.1:ENST00000456182.5:ENST00000263545.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	19	175	2	1.18665	1.51386	1.84107	0.0415955	0.0192797	0.161736	0.108861
chr11	86042593	86042693	5014578	0	-	0.3	(0.28,0.32]	chr11	473022	106	INTRON	INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000630913.2:ENST00000528398.5:ENST00000356360.9:ENST00000534412.5:ENST00000531558.1:ENST00000531930.5:ENST00000532041.5:ENST00000525162.5:ENST00000528256.1:ENST00000528411.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	29	248	2	1.45878	1.5137749999999999	1.56877	0.0170771	0.00945381	0.104099	0.0862386
chr1	21756145	21756245	396595	0	-	0.35	(0.32,0.35]	chr1	47333	2	SS5_PROX	SS5_PROX:INTRON	USP48	ENSG00000090686.16	ENST00000400301.5:ENST00000308271.14:ENST00000529637.5:ENST00000421625.6:ENST00000527823.5:ENST00000532737.1	protein_coding	protein_coding	protein_coding	protein_coding	32	251	2	1.51198	1.513535	1.51509	0.0168057	0.00590748	0.103458	0.0694038
chr11	85989749	85989849	5014028	0	-	0.29	(0.28,0.32]	chr11	472942	1	SS5_PROX	SS5_PROX:INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000530692.5:ENST00000630913.2:ENST00000529760.5:ENST00000528398.5:ENST00000356360.9:ENST00000529016.5:ENST00000526961.5:ENST00000530542.1	protein_coding	protein_coding	protein_coding	protein_coding	9	72	2	1.26409	1.5135100000000001	1.76293	0.0766478	0.0570949	0.196164	0.186331
chr1	144500	144599	352751	0	-	0.131313	[0,0.28]	chr1	40803	11	INTRON	INTRON	ENSG00000241860	ENSG00000241860.7	ENST00000484859.1:ENST00000490997.5	lncRNA	lncRNA	lncRNA	lncRNA	13	136	2	1.38987	1.513415	1.63696	0.0502717	0.0224451	0.156383	0.124921
chr1	31919460	31919559	414245	0	-	0.40404	(0.378,0.408]	chr1	49907	5	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	ENSG00000269967:PTP4A2	ENSG00000269967.1:ENSG00000184007.22	ENST00000602889.1:ENST00000647444.2:ENST00000602725.5:ENST00000649841.1:ENST00000528253.3:ENST00000468531.1:ENST00000534796.5:ENST00000532289.1:ENST00000526960.1:ENST00000524384.5:ENST00000528840.1:ENST00000494444.2:ENST00000529477.5:ENST00000533408.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:nonsense_mediated_decay:lncRNA:processed_transcript	29	198	2	1.28015	1.51335	1.74655	0.0168712	0.00639982	0.110817	0.0694534
chr1	51626612	51626712	99487	0	+	0.44	(0.408,0.44]	chr1	13244	90	INTRON	INTRON	OSBPL9	ENSG00000117859.19	ENST00000371714.5:ENST00000428468.6:ENST00000447887.5:ENST00000495776.5:ENST00000435274.6:ENST00000453295.5:ENST00000489990.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	50	2	1.43792	1.512775	1.58763	0.0639217	0.062843	0.196433	0.177824
chr22	18092654	18092753	7476109	0	+	0.424242	(0.408,0.44]	chr22	762231	47	UTR3	UTR3:EXON_MRNA	PEX26	ENSG00000215193.14	ENST00000329627.11:ENST00000399744.8	protein_coding	protein_coding	protein_coding	protein_coding	7	50	2	1.43792	1.512775	1.58763	0.0639217	0.062843	0.196433	0.177824
chr4	41955973	41956071	1955691	0	+	0.510204	(0.476,0.515]	chr4	195904	19	UTR3	UTR3:EXON_MRNA	TMEM33	ENSG00000109133.13	ENST00000325094.9:ENST00000504986.6	protein_coding	protein_coding	protein_coding	protein_coding	11	75	2	1.19752	1.51275	1.82798	0.0689479	0.0184548	0.184298	0.116598
chr9	74983170	74983269	4268223	0	-	0.484848	(0.476,0.515]	chr9	392766	25	UTR3	UTR3:EXON_MRNA	CARNMT1	ENSG00000156017.13	ENST00000376834.8	protein_coding	protein_coding	protein_coding	protein_coding	16	111	2	1.41305	1.51255	1.61205	0.0259752	0.0155821	0.12182	0.109411
chr16	8101222	8101322	6441521	0	-	0.43	(0.408,0.44]	chr16	620351	936	INTRON	INTRON	ENSG00000260289	ENSG00000260289.2	ENST00000670665.1:ENST00000654046.1:ENST00000567103.2	lncRNA	lncRNA	lncRNA	lncRNA	15	108	2	1.24871	1.512335	1.77596	0.0481368	0.00955516	0.171625	0.0820838
chr5	131719216	131719316	2719963	0	-	0.3	(0.28,0.32]	chr5	255714	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	FNIP1	ENSG00000217128.13	ENST00000510461.6:ENST00000307954.12:ENST00000307968.11:ENST00000511848.1	protein_coding	protein_coding	protein_coding	protein_coding	10	84	2	1.26409	1.5122849999999999	1.76048	0.0570949	0.0450149	0.186331	0.149888
chr1	223758300	223758397	320725	0	+	0.463918	(0.44,0.476]	chr1	36914	8	EXON_LNCRNA	EXON_LNCRNA:INTRON	CAPN2	ENSG00000162909.18	ENST00000433674.6:ENST00000295006.6:ENST00000474026.5:ENST00000487223.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	20	139	2	1.32075	1.51224	1.70373	0.0256355	0.00843049	0.133676	0.0776969
chr10	125057231	125057331	4713301	0	-	0.48	(0.476,0.515]	chr10	434897	177	INTRON	INTRON	CTBP2	ENSG00000175029.17	ENST00000337195.9:ENST00000411419.6:ENST00000494626.6:ENST00000531469.5:ENST00000460976.5:ENST00000476817.1:ENST00000530884.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	63	2	1.28655	1.5117150000000001	1.73688	0.075974	0.0252731	0.194842	0.133676
chr16	84714300	84714399	6410045	0	+	0.494949	(0.476,0.515]	chr16	615266	51	INTRON	INTRON	USP10	ENSG00000103194.16	ENST00000562743.5:ENST00000540269.6:ENST00000563892.5:ENST00000562092.1:ENST00000569511.5:ENST00000219473.12:ENST00000570191.5:ENST00000563048.5:ENST00000562283.5:ENST00000563386.5:ENST00000569038.5:ENST00000570053.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	63	2	1.28655	1.5117150000000001	1.73688	0.075974	0.0252731	0.194842	0.133676
chr16	89804808	89804908	6544700	0	-	0.48	(0.476,0.515]	chr16	634589	4	SS5_PROX	SS5_PROX:INTRON	FANCA	ENSG00000187741.16	ENST00000561667.2:ENST00000389301.8:ENST00000568369.6:ENST00000564475.6:ENST00000696275.1:ENST00000696287.1:ENST00000696286.1:ENST00000696274.1:ENST00000696291.1:ENST00000696276.1:ENST00000567205.2:ENST00000567284.7:ENST00000696277.1:ENST00000696292.1:ENST00000563767.2:ENST00000567621.6:ENST00000696288.1:ENST00000696293.1:ENST00000566889.5:ENST00000389302.7:ENST00000696294.1:ENST00000696295.1:ENST00000563673.5:ENST00000543736.5:ENST00000534992.5:ENST00000565582.5:ENST00000696296.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	50	2	1.40757	1.5117150000000001	1.61586	0.0707852	0.0567093	0.185107	0.184528
chr16	81464805	81464905	6405197	0	+	0.44	(0.408,0.44]	chr16	615026	189	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8	protein_coding	protein_coding	protein_coding	protein_coding	11	75	2	1.24904	1.51167	1.7743	0.055886	0.0244755	0.18407	0.12011
chr9	123168758	123168849	4339471	0	-	0.428571	(0.408,0.44]	chr9	398912	1	INTRON	INTRON	STRBP	ENSG00000165209.19	ENST00000348403.10:ENST00000447404.6:ENST00000360998.3:ENST00000407982.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	75	2	1.24904	1.51167	1.7743	0.055886	0.0244755	0.18407	0.12011
chr1	39880183	39880282	428240	0	-	0.383838	(0.378,0.408]	chr1	52034	37	INTRON	INTRON	TRIT1	ENSG00000043514.17	ENST00000316891.10:ENST00000648678.1:ENST00000537440.5:ENST00000372818.5:ENST00000462797.5:ENST00000441669.6:ENST00000495175.6:ENST00000491865.5:ENST00000541099.5:ENST00000492612.6:ENST00000489945.5:ENST00000486825.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	18	130	2	1.32035	1.51166	1.70297	0.0337322	0.00860548	0.134193	0.0837608
chr17	22092407	22092507	6578587	0	+	0.5	(0.476,0.515]	chr17	639556	11	INTRON	INTRON	UBBP4	ENSG00000263563.7	ENST00000648259.1:ENST00000688301.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	30	205	2	1.28778	1.511445	1.73511	0.023913	0.00246579	0.119385	0.0459275
chr15	90882770	90882869	6102100	0	+	0.50505	(0.476,0.515]	chr15	581067	10	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	FURIN	ENSG00000140564.13	ENST00000268171.8:ENST00000610579.4:ENST00000680053.1:ENST00000618099.4:ENST00000680687.1:ENST00000681804.1:ENST00000681865.1:ENST00000680086.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	26	179	2	1.45744	1.511255	1.56507	0.0129059	0.00813553	0.0927779	0.0810802
chr3	196052184	196052284	1897228	0	-	0.36	(0.35,0.378]	chr3	189888	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	TFRC	ENSG00000072274.13	ENST00000426789.5:ENST00000420415.5:ENST00000360110.9:ENST00000392396.7	protein_coding	protein_coding	protein_coding	protein_coding	9	71	2	1.47679	1.5112100000000002	1.54563	0.046845	0.0466814	0.167716	0.151623
chr14	95534501	95534598	5965464	0	-	0.680412	(0.57,1]	chr14	566636	10	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	SNHG10	ENSG00000247092.8	ENST00000667310.2:ENST00000671157.2:ENST00000658932.2:ENST00000500370.2:ENST00000554169.2:ENST00000693219.1:ENST00000685307.1:ENST00000691619.1:ENST00000689247.1:ENST00000687146.1:ENST00000660378.2:ENST00000689758.1:ENST00000690868.1:ENST00000693520.1:ENST00000685703.1:ENST00000690961.1:ENST00000689823.1:ENST00000689442.1:ENST00000688138.1:ENST00000693718.1:ENST00000688462.1:ENST00000553559.1:ENST00000555866.5:ENST00000691606.1:ENST00000688965.1	lncRNA	lncRNA	lncRNA	lncRNA	19	66	2	1.28639	1.51106	1.73573	0.0273008	0.00627913	0.136494	0.0686602
chr19	34400333	34400432	7052860	0	+	0.535354	(0.515,0.57]	chr19	703434	4	UTR3	UTR3:EXON_MRNA	GPI	ENSG00000105220.17	ENST00000415930.8:ENST00000356487.11:ENST00000586077.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	30	181	2	1.44602	1.51095	1.57588	0.0126935	0.00452181	0.0984971	0.0595107
chr2	167932110	167932210	1259124	0	-	0.48	(0.476,0.515]	chr2	133340	310	INTRON	INTRON	B3GALT1-AS1	ENSG00000235335.3	ENST00000430546.2:ENST00000657553.1:ENST00000670221.1:ENST00000436982.2	lncRNA	lncRNA	lncRNA	lncRNA	9	60	2	1.27903	1.510765	1.7425	0.0608608	0.0417334	0.19287	0.147007
chr17	75218506	75218606	6674395	0	+	0.29	(0.28,0.32]	chr17	651380	2	SS5_PROX	SS5_PROX:INTRON	NUP85	ENSG00000125450.11	ENST00000245544.9:ENST00000583948.5:ENST00000579324.5:ENST00000449421.6:ENST00000581104.5:ENST00000579298.5:ENST00000578830.5:ENST00000583877.5:ENST00000577561.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	12	107	2	1.38258	1.5106199999999999	1.63866	0.039453	0.0317527	0.161534	0.13151
chr1	89543433	89543533	157586	0	+	0.19	[0,0.28]	chr1	17165	161	INTRON	INTRON	LRRC8B	ENSG00000197147.15	ENST00000330947.7:ENST00000439853.6:ENST00000449440.5:ENST00000640258.1:ENST00000639264.1	protein_coding	protein_coding	protein_coding	protein_coding	10	105	2	1.45581	1.51055	1.56529	0.0586144	0.0363075	0.167915	0.153238
chr7	111436275	111436375	3622849	0	-	0.33	(0.32,0.35]	chr7	337108	435	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000452895.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding	8	68	2	1.40373	1.5102099999999998	1.61669	0.0593351	0.0578816	0.188651	0.168767
chr5	54303594	54303694	2620849	0	-	0.44	(0.408,0.44]	chr5	248862	174	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2:ENST00000505630.5:ENST00000505383.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	10	71	2	1.43388	1.5100500000000001	1.58622	0.0509486	0.0291748	0.157123	0.141552
chr5	53975615	53975715	2617560	0	-	0.41	(0.408,0.44]	chr5	248835	636	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	91	2	1.42285	1.50986	1.59687	0.0421231	0.0164598	0.148082	0.110142
chr6	149726378	149726476	3246762	0	-	0.295918	(0.28,0.32]	chr6	301666	22	UTR3	UTR3:EXON_MRNA	NUP43	ENSG00000120253.14	ENST00000340413.7	protein_coding	protein_coding	protein_coding	protein_coding	44	380	2	1.06015	1.50985	1.95955	0.0486983	9.02716e-4	0.154196	0.0275591
chr15	41300338	41300438	6004552	0	+	0.37	(0.35,0.378]	chr15	571273	24	EXON_LNCRNA	EXON_LNCRNA:INTRON	OIP5-AS1	ENSG00000247556.6	ENST00000500949.6:ENST00000501665.2	lncRNA	lncRNA	lncRNA	lncRNA	18	137	2	1.2253	1.509805	1.79431	0.0527082	0.00481603	0.161238	0.063849
chr1	36304986	36305079	73753	0	+	0.344086	(0.32,0.35]	chr1	9441	6	UTR3	UTR3:EXON_MRNA	THRAP3	ENSG00000054118.15	ENST00000648638.1:ENST00000354618.10	protein_coding	protein_coding	protein_coding	protein_coding	14	114	2	1.40348	1.50975	1.61602	0.0299484	0.0249674	0.142135	0.12011
chr19	577373	577473	6991891	0	+	0.65	(0.57,1]	chr19	692147	2	SS3_PROX	SS3_PROX:INTRON	BSG	ENSG00000172270.22	ENST00000545507.6:ENST00000346916.9:ENST00000680065.1:ENST00000679472.1:ENST00000680552.1:ENST00000613627.5:ENST00000576925.4:ENST00000573216.5:ENST00000572899.6:ENST00000333511.9:ENST00000353555.9:ENST00000590218.4:ENST00000680326.1:ENST00000618006.4:ENST00000614867.2:ENST00000618112.4:ENST00000573784.6:ENST00000574970.2:ENST00000576984.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	36	2	1.43111	1.509435	1.58776	0.0484405	0.0295652	0.153635	0.142135
chrX	123985681	123985781	7716992	0	+	0.44	(0.408,0.44]	chrX	789462	219	INTRON	INTRON	STAG2	ENSG00000101972.20	ENST00000394477.5:ENST00000218089.13:ENST00000455404.5:ENST00000483575.5:ENST00000687810.1:ENST00000687071.1:ENST00000469481.1:ENST00000458700.5:ENST00000371160.5:ENST00000435103.5:ENST00000687852.1:ENST00000371145.8:ENST00000692982.1:ENST00000371157.7:ENST00000691035.1:ENST00000686802.1:ENST00000691383.1:ENST00000686127.1:ENST00000371144.7:ENST00000458176.5:ENST00000466748.5:ENST00000471107.1:ENST00000428941.5:ENST00000435215.5:ENST00000394478.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	13	91	2	1.4846	1.509145	1.53369	0.034616	0.0209854	0.136674	0.122348
chr10	73007581	73007672	4646937	0	-	0.296703	(0.28,0.32]	chr10	427466	5	UTR3	UTR3:EXON_MRNA	P4HA1	ENSG00000122884.13	ENST00000394890.7:ENST00000307116.6:ENST00000373008.6:ENST00000440381.5:ENST00000263556.3	protein_coding	protein_coding	protein_coding	protein_coding	67	550	2	1.2563	1.508905	1.76151	0.012396	0.00360738	0.0973643	0.0533855
chr3	160437278	160437377	1849741	0	-	0.474747	(0.44,0.476]	chr3	186017	15	UTR3	UTR3:EXON_MRNA:INTRON	ENSG00000248710:TRIM59	ENSG00000248710.1:ENSG00000213186.8	ENST00000483754.1:ENST00000543469.1:ENST00000309784.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	26	165	2	1.09658	1.508795	1.92101	0.0371797	0.00398228	0.155878	0.0549449
chr9	133373738	133373838	4370425	0	-	0.5	(0.476,0.515]	chr9	402198	58	INTRON	INTRON	SURF4	ENSG00000148248.14	ENST00000545297.5:ENST00000613129.4:ENST00000618229.4:ENST00000371989.8:ENST00000485435.6:ENST00000467910.5:ENST00000371991.3:ENST00000371982.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	17	112	2	1.28253	1.508545	1.73456	0.0298044	0.0140928	0.142135	0.0959618
chrX	24075354	24075451	7630949	0	+	0.453608	(0.44,0.476]	chrX	781493	16	INTRON	INTRON	EIF2S3	ENSG00000130741.11	ENST00000253039.9:ENST00000457332.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	56	379	2	1.41985	1.507455	1.59506	0.00873566	0.00198687	0.0788605	0.0411469
chr16	85603216	85603316	6415864	0	+	0.61	(0.57,1]	chr16	615470	465	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	11	40	2	1.42298	1.50742	1.59186	0.0510995	0.0206559	0.176696	0.110999
chr3	15803568	15803668	1623881	0	-	0.35	(0.32,0.35]	chr3	168027	55	INTRON	INTRON	ANKRD28	ENSG00000206560.12	ENST00000399451.6:ENST00000412318.5:ENST00000439830.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	13	107	2	1.35397	1.5074	1.66083	0.0475566	0.0178056	0.153019	0.113505
chr7	72904083	72904183	3330039	0	+	0.59	(0.57,1]	chr7	309565	126	INTRON	INTRON	POM121	ENSG00000196313.13	ENST00000627934.3:ENST00000395270.5	protein_coding	protein_coding	protein_coding	protein_coding	10	36	2	1.3512	1.5073949999999998	1.66359	0.0618425	0.0224545	0.174429	0.124921
chr21	39301873	39301972	7465425	0	-	0.323232	(0.32,0.35]	chr21	760568	29	INTRON	INTRON	BRWD1	ENSG00000185658.14	ENST00000333229.6:ENST00000342449.8:ENST00000380800.7:ENST00000341322.4:ENST00000470108.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	16	116	2	1.21161	1.507335	1.80306	0.0377216	0.0246393	0.15655	0.12011
chr16	58623990	58624071	6496326	0	-	0.358025	(0.35,0.378]	chr16	628645	2	INTRON	INTRON	CNOT1	ENSG00000125107.19	ENST00000317147.10:ENST00000569240.5:ENST00000567188.5:ENST00000441024.6:ENST00000565605.5:ENST00000564557.1:ENST00000569916.1:ENST00000565697.1:ENST00000569020.5:ENST00000568158.1:ENST00000569263.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	13	99	2	1.43939	1.50719	1.57499	0.0418517	0.0185901	0.147271	0.117264
chr12	116119610	116119710	5423965	0	-	0.5	(0.476,0.515]	chr12	518263	77	INTRON	INTRON	MED13L	ENSG00000123066.9	ENST00000281928.9:ENST00000650226.1:ENST00000548743.2:ENST00000647567.1:ENST00000551197.2	protein_coding	protein_coding	protein_coding	protein_coding	9	60	2	1.32251	1.506945	1.69138	0.0533705	0.0481165	0.179876	0.153019
chr3	160436585	160436684	1849734	0	-	0.474747	(0.44,0.476]	chr3	186017	8	UTR3	UTR3:EXON_MRNA:INTRON	ENSG00000248710:TRIM59	ENSG00000248710.1:ENSG00000213186.8	ENST00000483754.1:ENST00000543469.1:ENST00000309784.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	55	2	1.40212	1.506875	1.61163	0.0598319	0.0524678	0.178047	0.169278
chr3	15050127	15050224	1619886	0	-	0.412371	(0.408,0.44]	chr3	167435	3	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	MRPS25	ENSG00000131368.9	ENST00000695375.1:ENST00000695376.1:ENST00000695377.1:ENST00000695378.1:ENST00000695379.1:ENST00000695380.1:ENST00000695381.1:ENST00000695382.1:ENST00000496484.2:ENST00000695334.1:ENST00000695384.1:ENST00000695322.1:ENST00000447299.2:ENST00000695383.1:ENST00000474866.2:ENST00000695385.1:ENST00000695386.1:ENST00000420267.6:ENST00000695387.1:ENST00000695388.1:ENST00000695389.1:ENST00000695390.1:ENST00000695391.1:ENST00000695392.1:ENST00000449354.7:ENST00000695393.1:ENST00000695394.1:ENST00000253686.7:ENST00000695395.1:ENST00000695323.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	15	104	2	1.26791	1.5067300000000001	1.74555	0.0437893	0.0118908	0.14901	0.0962115
chr6	87226133	87226232	2913971	0	+	0.40404	(0.378,0.408]	chr6	275311	23	INTRON	INTRON	ZNF292	ENSG00000188994.13	ENST00000369577.8:ENST00000518845.1:ENST00000339907.8:ENST00000496806.2	protein_coding	protein_coding	protein_coding	protein_coding	13	94	2	1.395	1.506645	1.61829	0.0467334	0.0153255	0.151763	0.108569
chr6	143442175	143442274	3242284	0	-	0.393939	(0.378,0.408]	chr6	301155	3	INTRON	INTRON	ADAT2	ENSG00000189007.16	ENST00000237283.9	protein_coding	protein_coding	protein_coding	protein_coding	9	67	2	1.44787	1.5065849999999998	1.5653	0.0496837	0.043739	0.162255	0.156383
chr17	58004618	58004718	6800023	0	-	0.43	(0.408,0.44]	chr17	671424	38	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	ENSG00000266086:SRSF1	ENSG00000266086.3:ENSG00000136450.13	ENST00000578794.2:ENST00000665125.1:ENST00000258962.5:ENST00000582730.6:ENST00000581497.1:ENST00000584668.5:ENST00000581979.5:ENST00000584773.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	50	345	2	1.43855	1.506555	1.57456	0.00795555	0.00297415	0.0763852	0.0501455
chr16	23871918	23872018	6324119	0	+	0.5	(0.476,0.515]	chr16	605697	27	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000645517.1:ENST00000498739.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	14	93	2	1.13713	1.506285	1.87544	0.0611432	0.0113658	0.193423	0.0886611
chr3	28269563	28269663	1390827	0	+	0.47	(0.44,0.476]	chr3	145643	58	INTRON	INTRON	CMC1	ENSG00000187118.14	ENST00000477739.1:ENST00000423894.5:ENST00000466830.6:ENST00000334841.10:ENST00000418849.2:ENST00000396610.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	77	2	1.30125	1.50622	1.71119	0.0734119	0.0136438	0.190171	0.101813
chr11	65505226	65505325	4806196	0	+	0.454545	(0.44,0.476]	chr11	446569	77	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MALAT1	ENSG00000251562.9	ENST00000619449.2:ENST00000534336.1:ENST00000610851.1:ENST00000618227.1:ENST00000617489.1:ENST00000616691.1	lncRNA	lncRNA	lncRNA	lncRNA	2570	16573	2	1.39097	1.505905	1.62084	0.00193604	9.52096e-4	0.0408716	0.0282335
chrX	13316561	13316631	7622219	0	+	0.414286	(0.408,0.44]	chrX	780288	1	EXON_LNCRNA	EXON_LNCRNA	GS1-600G8.3	ENSG00000231216.1	ENST00000431486.1	lncRNA	lncRNA	lncRNA	lncRNA	37	252	2	1.13088	1.5057800000000001	1.88068	0.0342452	9.68265e-4	0.135554	0.0286501
chr10	70426228	70426327	4447298	0	+	0.454545	(0.44,0.476]	chr10	410355	46	UTR3	UTR3:EXON_MRNA	EIF4EBP2	ENSG00000148730.7	ENST00000373218.5	protein_coding	protein_coding	protein_coding	protein_coding	20	138	2	1.38575	1.505455	1.62516	0.0230263	0.0097091	0.118056	0.0875962
chr19	39350471	39350567	7067275	0	+	0.447917	(0.44,0.476]	chr19	705677	8	EXON_MRNA	EXON_MRNA:INTRON	SAMD4B	ENSG00000179134.16	ENST00000610417.5:ENST00000598913.5:ENST00000314471.10:ENST00000601613.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	14	97	2	1.35523	1.505455	1.65568	0.0430576	0.0130261	0.148082	0.099362
chr20	47255116	47255215	7348484	0	-	0.313131	(0.28,0.32]	chr20	749282	53	INTRON	INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000467200.6:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000468376.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	14	125	2	1.33232	1.5054349999999999	1.67855	0.039862	0.0219528	0.161534	0.115201
chr6	124975587	124975686	2951604	0	+	0.444444	(0.44,0.476]	chr6	277674	36	INTRON	INTRON	RNF217	ENSG00000146373.17	ENST00000521654.7:ENST00000560949.5:ENST00000519565.5:ENST00000454842.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	12	79	2	1.21196	1.505345	1.79873	0.0542558	0.0223888	0.182243	0.116918
chr11	62855688	62855786	4961889	0	-	0.561224	(0.515,0.57]	chr11	467083	28	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SNHG1	ENSG00000255717.8	ENST00000689147.1:ENST00000686500.1:ENST00000665371.1:ENST00000687243.1:ENST00000537869.6:ENST00000686081.1:ENST00000686670.1:ENST00000690476.1:ENST00000688102.1:ENST00000691255.1:ENST00000539303.6:ENST00000538654.6:ENST00000540725.6:ENST00000658540.1:ENST00000685229.1:ENST00000686478.1:ENST00000686008.1:ENST00000692887.1:ENST00000691324.1:ENST00000692454.1:ENST00000685577.1:ENST00000693734.1:ENST00000537068.5:ENST00000537925.5:ENST00000541416.6:ENST00000660547.1:ENST00000689664.1:ENST00000690542.1:ENST00000539921.7:ENST00000687029.1:ENST00000661616.1:ENST00000664307.1:ENST00000665512.1:ENST00000656268.1:ENST00000535689.6:ENST00000663237.1:ENST00000544550.6:ENST00000660730.1:ENST00000660960.1:ENST00000662229.1:ENST00000670729.1:ENST00000655919.1:ENST00000671236.1:ENST00000667655.1:ENST00000653690.1:ENST00000661936.1:ENST00000544983.2:ENST00000535076.6:ENST00000656240.1:ENST00000656589.1:ENST00000545920.2:ENST00000670502.1:ENST00000663092.1:ENST00000656241.1:ENST00000652879.1:ENST00000668309.1:ENST00000542112.5	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	16	95	2	1.43616	1.505105	1.57405	0.0221119	0.018797	0.123903	0.108861
chr11	66644943	66645043	4811095	0	+	0.36	(0.35,0.378]	chr11	447902	2	SS5_PROX	SS5_PROX:INTRON	RBM14-RBM4:RBM4	ENSG00000248643.5:ENSG00000173933.21	ENST00000412278.2:ENST00000500635.2:ENST00000396053.9:ENST00000408993.6:ENST00000578778.5:ENST00000398692.8:ENST00000310092.12:ENST00000528039.5:ENST00000506523.6:ENST00000530235.1:ENST00000409406.1:ENST00000515838.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	63	2	1.4414	1.505105	1.56881	0.0629423	0.047622	0.196658	0.153019
chr12	131739025	131739125	5249373	0	+	0.47	(0.44,0.476]	chr12	499173	102	INTRON	INTRON	SFSWAP	ENSG00000061936.10	ENST00000261674.9:ENST00000538548.5:ENST00000535236.5:ENST00000541286.5:ENST00000535202.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	50	2	1.38039	1.504675	1.62896	0.0762718	0.0546679	0.195539	0.182674
chr16	30250926	30251025	6472618	0	-	0.414141	(0.408,0.44]	chr16	625566	47	INTRON	INTRON	NPIPB13	ENSG00000198064.14	ENST00000568053.5	protein_coding	protein_coding	protein_coding	protein_coding	23	161	2	1.38187	1.5046499999999998	1.62743	0.0180058	0.00885176	0.114436	0.079471
chr7	148842880	148842979	3670346	0	-	0.464646	(0.44,0.476]	chr7	340616	55	INTRON	INTRON	EZH2	ENSG00000106462.12	ENST00000683292.1:ENST00000320356.7:ENST00000492143.5:ENST00000478654.5:ENST00000350995.6:ENST00000460911.5:ENST00000683744.1:ENST00000682317.1:ENST00000682263.1:ENST00000684300.1:ENST00000476773.5:ENST00000483967.5:ENST00000498186.5:ENST00000483012.1:ENST00000682401.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	74	2	1.24733	1.50464	1.76195	0.0561984	0.0252608	0.18407	0.12011
chr4	55425542	55425632	1960899	0	+	0.288889	(0.28,0.32]	chr4	196586	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	TMEM165	ENSG00000134851.13	ENST00000381334.10:ENST00000506198.5:ENST00000508404.5:ENST00000514904.5:ENST00000608091.1:ENST00000506103.2:ENST00000515591.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	20	179	2	1.13478	1.5043449999999998	1.87391	0.069575	0.00332201	0.184298	0.0528673
chr5	32168650	32168750	2597459	0	-	0.46	(0.44,0.476]	chr5	246744	244	INTRON	INTRON	GOLPH3	ENSG00000113384.14	ENST00000265070.7:ENST00000503610.5:ENST00000512668.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	19	129	2	1.43683	1.504315	1.5718	0.0170387	0.0160617	0.109464	0.104099
chr16	217654	217753	6426070	0	-	0.313131	(0.28,0.32]	chr16	617437	80	INTRON	INTRON	LUC7L	ENSG00000007392.17	ENST00000337351.8:ENST00000426094.5:ENST00000397783.5:ENST00000629543.2:ENST00000490762.5:ENST00000293872.13:ENST00000419516.5:ENST00000397780.5:ENST00000418978.5:ENST00000430864.5:ENST00000443357.5:ENST00000494366.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	22	175	2	1.12164	1.504295	1.88695	0.0426568	0.0106394	0.162255	0.0861859
chr1	155971854	155971954	565153	0	-	0.28	[0,0.28]	chr1	67624	2	SS5_PROX	SS5_PROX:INTRON	ARHGEF2	ENSG00000116584.22	ENST00000313695.11:ENST00000361247.9:ENST00000477754.2:ENST00000673475.1:ENST00000462460.6:ENST00000696600.1:ENST00000696601.1:ENST00000313667.8:ENST00000471589.5:ENST00000476273.1:ENST00000497907.5:ENST00000465079.1:ENST00000495070.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	13	135	2	1.37121	1.504085	1.63696	0.0529612	0.0224451	0.161987	0.124921
chr17	28587498	28587598	6744544	0	-	0.43	(0.408,0.44]	chr17	662448	6	INTRON	INTRON	SPAG5	ENSG00000076382.17	ENST00000321765.10:ENST00000584206.1	protein_coding	protein_coding	protein_coding	protein_coding	15	103	2	1.45405	1.5038900000000002	1.55373	0.0381812	0.0131662	0.141795	0.0999551
chr22	21787656	21787756	7560580	0	-	0.49	(0.476,0.515]	chr22	773360	143	INTRON	INTRON	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	14	93	2	1.37976	1.50379	1.62782	0.0274391	0.0264034	0.133676	0.123904
chr12	110294802	110294901	5226235	0	+	0.525253	(0.515,0.57]	chr12	495240	23	INTRON	INTRON	ATP2A2	ENSG00000174437.18	ENST00000552636.2:ENST00000308664.10:ENST00000539276.7:ENST00000377685.9:ENST00000548169.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	71	2	1.43349	1.5037699999999998	1.57405	0.0378274	0.0221119	0.141117	0.123903
chr2	200822674	200822773	980684	0	+	0.30303	(0.28,0.32]	chr2	105266	6	UTR3	UTR3:EXON_MRNA	BZW1	ENSG00000082153.18	ENST00000409600.6:ENST00000409226.5	protein_coding	protein_coding	protein_coding	protein_coding	10	92	2	1.41943	1.503635	1.58784	0.0528302	0.0369776	0.178899	0.139194
chr2	58215873	58215971	1126495	0	-	0.336735	(0.32,0.35]	chr2	120938	18	INTRON	INTRON	FANCL	ENSG00000115392.13	ENST00000696400.1:ENST00000403295.8:ENST00000696492.1:ENST00000427708.7:ENST00000696314.1:ENST00000696315.1:ENST00000696454.1:ENST00000696508.1:ENST00000696548.1:ENST00000696542.1:ENST00000696319.1:ENST00000403676.6:ENST00000696433.1:ENST00000696434.1:ENST00000696499.1:ENST00000696564.1:ENST00000402135.8:ENST00000696546.1:ENST00000233741.9:ENST00000696316.1:ENST00000696378.1:ENST00000696435.1:ENST00000696493.1:ENST00000696543.1:ENST00000696544.1:ENST00000696545.1:ENST00000696565.1:ENST00000696620.1:ENST00000696621.1:ENST00000696635.1:ENST00000696364.1:ENST00000696634.1:ENST00000696317.1:ENST00000696622.1:ENST00000696467.1:ENST00000696547.1:ENST00000449070.6:ENST00000696305.1:ENST00000417361.2:ENST00000696338.1:ENST00000696361.1:ENST00000696318.1:ENST00000696371.1:ENST00000696409.1:ENST00000696410.1:ENST00000696455.1:ENST00000696468.1:ENST00000696527.1:ENST00000696567.1:ENST00000696324.1:ENST00000696566.1:ENST00000696623.1:ENST00000446381.6:ENST00000696469.1:ENST00000696624.1:ENST00000696411.1:ENST00000470506.2:ENST00000696358.1:ENST00000696373.1:ENST00000696394.1:ENST00000696320.1:ENST00000696395.1:ENST00000696341.1:ENST00000696340.1:ENST00000696374.1:ENST00000696396.1:ENST00000696342.1:ENST00000696325.1:ENST00000696399.1:ENST00000696398.1:ENST00000696306.1:ENST00000696397.1:ENST00000696360.1:ENST00000696344.1:ENST00000696343.1:ENST00000696362.1:ENST00000696528.1:ENST00000696326.1:ENST00000696625.1:ENST00000696510.1:ENST00000696438.1:ENST00000696496.1:ENST00000696509.1:ENST00000696569.1:ENST00000696457.1:ENST00000696458.1:ENST00000696473.1:ENST00000696495.1:ENST00000696415.1:ENST00000696472.1:ENST00000696459.1:ENST00000696416.1:ENST00000696530.1:ENST00000696460.1:ENST00000696570.1:ENST00000696531.1:ENST00000696307.1:ENST00000696345.1:ENST00000696377.1:ENST00000696417.1:ENST00000696594.1:ENST00000696595.1:ENST00000696379.1:ENST00000696346.1:ENST00000696380.1:ENST00000696347.1:ENST00000696461.1:ENST00000696596.1:ENST00000696549.1:ENST00000696597.1:ENST00000696550.1:ENST00000696598.1:ENST00000696321.1:ENST00000696476.1:ENST00000696477.1:ENST00000696511.1:ENST00000481670.3:ENST00000696403.1:ENST00000696551.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	58	2	1.45026	1.50354	1.55682	0.0724487	0.0622478	0.194723	0.188101
chr13	110894565	110894638	5650436	0	-	0.328767	(0.32,0.35]	chr13	538354	2	SS3_PROX	SS3_PROX:INTRON	ANKRD10	ENSG00000088448.14	ENST00000267339.6:ENST00000489973.6:ENST00000310847.8:ENST00000465753.1:ENST00000475809.1:ENST00000494859.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	23	167	2	1.23553	1.50322	1.77091	0.0248151	0.0146308	0.132062	0.0982604
chr1	203853199	203853299	297282	0	+	0.39	(0.378,0.408]	chr1	34230	9	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ZC3H11A:ZBED6	ENSG00000058673.17:ENSG00000257315.3	ENST00000367210.3:ENST00000638800.1:ENST00000639812.1:ENST00000332127.8:ENST00000550078.2:ENST00000495527.5:ENST00000640465.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	21	148	2	1.41978	1.50316	1.58654	0.0307162	0.00662856	0.13151	0.0738715
chr3	152382879	152382979	1536130	0	+	0.43	(0.408,0.44]	chr3	160003	473	INTRON	INTRON	MBNL1	ENSG00000152601.18	ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000495875.6:ENST00000324210.10:ENST00000493459.5:ENST00000459747.1:ENST00000460591.5:ENST00000545754.5:ENST00000357472.7:ENST00000324196.9:ENST00000498502.5:ENST00000463374.5:ENST00000485910.5:ENST00000465907.6:ENST00000492948.5:ENST00000485509.5:ENST00000464596.5	protein_coding	protein_coding	protein_coding	protein_coding	11	77	2	1.49971	1.5031150000000002	1.50652	0.0410276	0.0298505	0.1451	0.142135
chr2	65095772	65095872	1142618	0	-	0.47	(0.44,0.476]	chr2	122174	43	INTRON	INTRON	RAB1A	ENSG00000138069.18	ENST00000649427.1:ENST00000494188.1:ENST00000409784.8:ENST00000409892.5:ENST00000409751.1:ENST00000398529.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	14	94	2	1.47495	1.50306	1.53117	0.0377545	0.0181844	0.140863	0.115087
chr22	16607780	16607879	7473418	0	+	0.484848	(0.476,0.515]	chr22	761972	52	INTRON	INTRON	TPTEP1:ENSG00000283633	ENSG00000100181.22:ENSG00000283633.1	ENST00000558085.6:ENST00000400593.6:ENST00000592918.5:ENST00000592107.5:ENST00000426585.5:ENST00000591299.1	lncRNA	lncRNA	lncRNA:transcribed_unprocessed_pseudogene	lncRNA:processed_transcript	12	83	2	1.41081	1.50287	1.59493	0.0430655	0.0213255	0.148082	0.123504
chr3	177185582	177185682	1872330	0	-	0.33	(0.32,0.35]	chr3	187438	143	INTRON	INTRON	TBL1XR1	ENSG00000177565.18	ENST00000457928.7:ENST00000430069.5:ENST00000673974.1:ENST00000352800.10:ENST00000422442.6:ENST00000428970.5:ENST00000424913.5:ENST00000437738.5:ENST00000431421.5:ENST00000635794.1:ENST00000630796.2:ENST00000450267.5:ENST00000630833.2:ENST00000431674.5:ENST00000422066.5:ENST00000443315.5:ENST00000627825.2:ENST00000427349.5:ENST00000413084.5:ENST00000637137.1:ENST00000491623.2:ENST00000637544.1:ENST00000636187.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	19	144	2	1.25549	1.502635	1.74978	0.0296728	0.0157772	0.142135	0.101453
chr11	118749042	118749141	5045931	0	-	0.383838	(0.378,0.408]	chr11	475731	14	UTR3	UTR3:EXON_MRNA	DDX6	ENSG00000110367.14	ENST00000534980.7:ENST00000620157.4	protein_coding	protein_coding	protein_coding	protein_coding	8	60	2	1.41201	1.50259	1.59317	0.0603812	0.0550809	0.19151	0.165463
chr6	31836368	31836442	2843848	0	+	0.5	(0.476,0.515]	chr6	267911	2	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	SNHG32	ENSG00000204387.14	ENST00000375640.7:ENST00000375641.6:ENST00000375635.6:ENST00000375638.7:ENST00000648677.1:ENST00000375642.6:ENST00000614363.4:ENST00000395789.5:ENST00000375633.5	lncRNA	lncRNA	lncRNA	lncRNA	63	373	2	0.867144	1.502512	2.13788	0.0597232	2.3724e-4	0.169098	0.0136195
chr13	95793503	95793602	5518372	0	+	0.565657	(0.515,0.57]	chr13	527702	26	UTR3	UTR3:EXON_MRNA	DNAJC3	ENSG00000102580.15	ENST00000602402.6	protein_coding	protein_coding	protein_coding	protein_coding	7	42	2	1.49871	1.50238	1.5060500000000001	0.0770828	0.0511812	0.196285	0.176696
chr2	235520026	235520126	1041595	0	+	0.52	(0.515,0.57]	chr2	111217	248	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	42	2	1.49871	1.50238	1.5060500000000001	0.0770828	0.0511812	0.196285	0.176696
chr6	20416227	20416327	2827591	0	+	0.56	(0.515,0.57]	chr6	265575	120	INTRON	INTRON	E2F3	ENSG00000112242.16	ENST00000346618.8:ENST00000535432.2	protein_coding	protein_coding	protein_coding	protein_coding	7	42	2	1.49871	1.50238	1.5060500000000001	0.0770828	0.0511812	0.196285	0.176696
chr8	115503205	115503305	4029999	0	-	0.45	(0.44,0.476]	chr8	367949	111	INTRON	INTRON	TRPS1	ENSG00000104447.13	ENST00000395715.8:ENST00000640765.1:ENST00000220888.9:ENST00000519076.5:ENST00000520276.5	protein_coding	protein_coding	protein_coding	protein_coding	9	63	2	1.30125	1.501835	1.70242	0.0734119	0.0282713	0.190171	0.137721
chr1	99730942	99731041	514973	0	-	0.565657	(0.515,0.57]	chr1	60376	8	INTRON	INTRON	FRRS1	ENSG00000156869.14	ENST00000646001.2:ENST00000287474.9	protein_coding	protein_coding	protein_coding	protein_coding	12	70	2	1.18251	1.50182	1.82113	0.0690131	0.0118311	0.184298	0.0962115
chr2	32221010	32221109	730347	0	+	0.444444	(0.44,0.476]	chr2	84231	4	UTR3	UTR3:EXON_MRNA	SLC30A6	ENSG00000152683.14	ENST00000357055.7:ENST00000435660.5:ENST00000282587.9:ENST00000449777.5:ENST00000454324.5:ENST00000379343.6:ENST00000406369.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	23	155	2	1.16312	1.501585	1.84005	0.0361284	0.00464939	0.152563	0.0600108
chr7	139368893	139368992	3437678	0	+	0.373737	(0.35,0.378]	chr7	320318	82	INTRON	INTRON	LUC7L2:FMC1-LUC7L2	ENSG00000146963.18:ENSG00000269955.2	ENST00000541170.7:ENST00000541515.3:ENST00000608368.5:ENST00000619796.4:ENST00000354926.9:ENST00000435096.1:ENST00000456182.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	81	2	1.16659	1.50146	1.83633	0.0567022	0.0335602	0.185107	0.134145
chr2	107729746	107729846	1205847	0	-	0.37	(0.35,0.378]	chr2	128532	121	INTRON	INTRON	LINC01885:ENSG00000286769	ENSG00000237880.2:ENSG00000286769.1	ENST00000654481.1:ENST00000669817.1	lncRNA	lncRNA	lncRNA	lncRNA	13	99	2	1.45393	1.50139	1.54885	0.0295814	0.0289548	0.140852	0.128519
chr18	9921209	9921308	6873413	0	+	0.393939	(0.378,0.408]	chr18	680866	50	INTRON	INTRON	VAPA	ENSG00000101558.14	ENST00000400000.7:ENST00000577901.5:ENST00000340541.4:ENST00000585042.5:ENST00000578314.1:ENST00000584796.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	15	106	2	1.48911	1.50129	1.51347	0.0322039	0.0174154	0.132543	0.11265
chr6	109367591	109367689	3185760	0	-	0.367347	(0.35,0.378]	chr6	296652	12	UTR3	UTR3:EXON_MRNA	CD164	ENSG00000135535.17	ENST00000310786.10:ENST00000413644.6:ENST00000504373.2:ENST00000415861.2:ENST00000324953.9:ENST00000275080.11:ENST00000499860.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	49	315	2	0.870045	1.5009875	2.13193	0.0593595	8.35795e-4	0.189982	0.0266487
chr5	54010510	54010610	2617909	0	-	0.37	(0.35,0.378]	chr5	248835	985	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	17	123	2	1.30303	1.50095	1.69887	0.0285003	0.0177264	0.1388	0.105449
chr11	31500290	31500389	4939148	0	-	0.353535	(0.35,0.378]	chr11	462601	117	INTRON	INTRON	IMMP1L	ENSG00000148950.11	ENST00000532287.6:ENST00000534812.5:ENST00000526776.5:ENST00000278200.5:ENST00000648582.1:ENST00000533642.1:ENST00000527184.5:ENST00000528161.5:ENST00000532624.5:ENST00000529749.5:ENST00000530023.5:ENST00000531693.1:ENST00000532668.1:ENST00000533921.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	72	2	1.38936	1.50078	1.6122	0.0616849	0.0361852	0.174021	0.152746
chr5	21482967	21483066	2325963	0	+	0.656566	(0.57,1]	chr5	225028	84	INTRON	INTRON	GUSBP1	ENSG00000183666.18	ENST00000508260.5:ENST00000449061.3:ENST00000685731.1:ENST00000688956.1:ENST00000692922.1:ENST00000686144.1:ENST00000607545.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	10	36	2	1.37384	1.5006849999999998	1.62753	0.0766386	0.0184812	0.196164	0.116694
chr9	135942289	135942389	4372369	0	-	0.39	(0.378,0.408]	chr9	402518	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	UBAC1	ENSG00000130560.9	ENST00000371756.4:ENST00000489050.5:ENST00000465873.5:ENST00000471163.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	47	320	2	1.22573	1.5005600000000001	1.77539	0.0144683	0.00265497	0.105151	0.0461472
chr1	113083429	113083529	188196	0	+	0.52	(0.515,0.57]	chr1	20854	94	INTRON	INTRON	LRIG2	ENSG00000198799.12	ENST00000361127.6	protein_coding	protein_coding	protein_coding	protein_coding	11	65	2	1.38593	1.500515	1.6151	0.0554883	0.0189412	0.165463	0.118428
chr17	21621400	21621500	6578367	0	+	0.36	(0.35,0.378]	chr17	639543	65	INTRON	INTRON	ENSG00000260157	ENSG00000260157.3	ENST00000618784.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	9	66	2	1.38867	1.500435	1.6122	0.0616849	0.0441117	0.174021	0.162255
chr11	68464820	68464920	4817373	0	+	0.4	(0.378,0.408]	chr11	448907	36	INTRON	INTRON	PPP6R3	ENSG00000110075.15	ENST00000530427.5:ENST00000528635.5:ENST00000529907.5:ENST00000533127.5:ENST00000534534.5:ENST00000529344.5:ENST00000524845.5:ENST00000393800.7:ENST00000265637.8:ENST00000524904.5:ENST00000393801.7:ENST00000265636.9:ENST00000529710.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	16	116	2	1.11352	1.5004300000000002	1.88734	0.079548	0.00371027	0.19979	0.0561833
chr1	23970245	23970344	402060	0	-	0.383838	(0.378,0.408]	chr1	48275	24	UTR3	UTR3:EXON_MRNA:INTRON	SRSF10	ENSG00000188529.15	ENST00000492112.3:ENST00000344989.10:ENST00000341154.10:ENST00000453840.7:ENST00000484146.6:ENST00000473858.5:ENST00000374452.9:ENST00000374453.7:ENST00000343255.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	22	157	2	1.30053	1.5002	1.69987	0.0328006	0.00503271	0.133816	0.0646039
chr4	78827050	78827149	1981894	0	+	0.383838	(0.378,0.408]	chr4	198473	5	INTRON	INTRON	BMP2K	ENSG00000138756.19	ENST00000389010.7:ENST00000502613.3:ENST00000502871.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	86	2	1.41201	1.5001799999999998	1.58835	0.0550809	0.0172286	0.165463	0.111597
chr9	128272388	128272487	4358193	0	-	0.535354	(0.515,0.57]	chr9	400430	22	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	GOLGA2	ENSG00000167110.19	ENST00000421699.8:ENST00000611957.5:ENST00000693185.1:ENST00000686291.1:ENST00000687179.1:ENST00000458730.3:ENST00000693047.1:ENST00000686884.1:ENST00000693180.1:ENST00000691040.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	26	150	2	1.45629	1.50001	1.54373	0.0135617	0.00636057	0.0949306	0.0724173
chr15	34537343	34537419	6133429	0	-	0.473684	(0.44,0.476]	chr15	584363	1	UTR5	UTR5:EXON_MRNA	GOLGA8B	ENSG00000215252.12	ENST00000683415.1:ENST00000569100.5:ENST00000484716.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	19	130	2	1.40717	1.49977	1.59237	0.0268679	0.00945698	0.123442	0.0862627
chr18	9922107	9922206	6873422	0	+	0.424242	(0.408,0.44]	chr18	680866	59	INTRON	INTRON	VAPA	ENSG00000101558.14	ENST00000400000.7:ENST00000577901.5:ENST00000340541.4:ENST00000585042.5:ENST00000578314.1:ENST00000584796.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	18	106	2	1.05414	1.4997250000000002	1.94531	0.053637	0.0136489	0.180551	0.0949306
chr5	32125911	32126011	2597028	0	-	0.44	(0.408,0.44]	chr5	246727	13	UTR3	UTR3:EXON_MRNA	GOLPH3	ENSG00000113384.14	ENST00000265070.7	protein_coding	protein_coding	protein_coding	protein_coding	15	104	2	1.4685	1.4996450000000001	1.53079	0.029918	0.0173197	0.129138	0.112111
chr7	131417297	131417397	3417344	0	+	0.29	(0.28,0.32]	chr7	319231	22	INTRON	INTRON	MKLN1	ENSG00000128585.18	ENST00000421797.6:ENST00000352689.11:ENST00000494785.5:ENST00000458153.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	106	2	1.48049	1.4993500000000002	1.51821	0.0503127	0.0249506	0.156383	0.132531
chr3	6542212	6542312	1356663	0	+	0.37	(0.35,0.378]	chr3	142508	291	INTRON	INTRON	ENSG00000189229	ENSG00000189229.12	ENST00000660158.1:ENST00000433639.1:ENST00000655754.1:ENST00000653839.1:ENST00000662846.1:ENST00000659876.1:ENST00000414438.2:ENST00000658468.1:ENST00000414603.1:ENST00000669512.1:ENST00000667028.1:ENST00000655541.1:ENST00000668643.1:ENST00000671568.1:ENST00000671036.1:ENST00000669798.1:ENST00000655753.1:ENST00000655856.1:ENST00000658398.1:ENST00000661518.1:ENST00000661279.1:ENST00000655495.1:ENST00000663041.1:ENST00000659827.1:ENST00000667716.1:ENST00000662508.1:ENST00000668416.1:ENST00000658133.1:ENST00000659651.1:ENST00000342990.4:ENST00000660054.1:ENST00000671370.1	lncRNA	lncRNA	lncRNA	lncRNA	22	166	2	1.13441	1.49877	1.86313	0.0445231	0.00488583	0.162997	0.0608364
chr9	131189826	131189924	4216290	0	+	0.397959	(0.378,0.408]	chr9	386642	3	INTRON	INTRON	NUP214	ENSG00000126883.19	ENST00000695497.1:ENST00000695498.1:ENST00000695496.1:ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000525980.5:ENST00000526346.5:ENST00000531929.5:ENST00000651334.1:ENST00000524578.6:ENST00000453861.6:ENST00000470765.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	18	128	2	1.46505	1.4987650000000001	1.53248	0.0262608	0.0124864	0.122221	0.0975309
chr16	22496500	22496600	6322570	0	+	0.41	(0.408,0.44]	chr16	605439	43	INTRON	INTRON	NPIPB5	ENSG00000243716.11	ENST00000415654.5:ENST00000415833.6:ENST00000546168.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	26	179	2	1.41835	1.49866	1.57897	0.0126608	0.00968586	0.0982897	0.0828432
chrX	71573993	71574093	7680382	0	+	0.53	(0.515,0.57]	chrX	786485	3	UTR3	UTR3:EXON_MRNA	OGT	ENSG00000147162.14	ENST00000373719.8:ENST00000488174.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	32	183	2	1.47807	1.498615	1.51916	0.00833215	0.00614681	0.0774402	0.0710694
chr21	10438655	10438755	7368381	0	+	0.39	(0.378,0.408]	chr21	751975	234	INTRON	INTRON	BAGE2	ENSG00000187172.15	ENST00000474011.5:ENST00000470054.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	8	57	2	1.41307	1.49828	1.58349	0.0653091	0.0510067	0.180158	0.176593
chr16	21873467	21873566	6461978	0	-	0.515152	(0.476,0.515]	chr16	623467	73	INTRON	INTRON	NPIPB4	ENSG00000185864.18	ENST00000543449.1:ENST00000538859.1	protein_coding	processed_transcript	protein_coding	processed_transcript	19	123	2	1.08365	1.497835	1.91202	0.0564543	0.00593312	0.166947	0.0696183
chr2	27034609	27034634	716504	0	+	0.28	[0,0.28]	chr2	82749	1	SS5_PROX	SS5_PROX:INTRON	TMEM214	ENSG00000119777.20	ENST00000495312.1:ENST00000321326.11:ENST00000435172.6:ENST00000238788.14:ENST00000404032.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	131	2	1.21181	1.4977	1.78359	0.0620292	0.0230741	0.194122	0.118139
chr1	32021939	32022038	62723	0	+	0.484848	(0.476,0.515]	chr1	7939	72	INTRON	INTRON	KHDRBS1	ENSG00000121774.18	ENST00000327300.12:ENST00000307714.12:ENST00000492989.1:ENST00000484270.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	68	2	1.32251	1.49767	1.67283	0.0533705	0.0332283	0.179876	0.134145
chr7	155304195	155304295	3451829	0	+	0.49	(0.476,0.515]	chr7	322632	3	SS5_PROX	SS5_PROX:INTRON	INSIG1	ENSG00000186480.13	ENST00000344756.8:ENST00000340368.9:ENST00000342407.5:ENST00000476756.1	protein_coding	protein_coding	protein_coding	protein_coding	14	96	2	1.32381	1.49757	1.67133	0.0471595	0.012282	0.152472	0.0970106
chr1	244434171	244434269	672664	0	-	0.438776	(0.408,0.44]	chr1	79568	12	INTRON	INTRON	ADSS2	ENSG00000035687.10	ENST00000366535.4	protein_coding	protein_coding	protein_coding	protein_coding	8	55	2	1.35436	1.49749	1.64062	0.0603719	0.0557275	0.19151	0.165463
chr7	105356356	105356456	3603580	0	-	0.37	(0.35,0.378]	chr7	336161	494	INTRON	INTRON	SRPK2	ENSG00000135250.17	ENST00000393651.8:ENST00000482897.5:ENST00000460391.5:ENST00000462282.5:ENST00000465112.5:ENST00000482862.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	62	2	1.44934	1.4974850000000002	1.54563	0.0658369	0.046845	0.181518	0.167716
chr3	119461266	119461363	1791963	0	-	0.402062	(0.378,0.408]	chr3	179955	27	INTRON	INTRON	TMEM39A	ENSG00000176142.13	ENST00000319172.10:ENST00000438581.6:ENST00000491685.5:ENST00000486159.5:ENST00000486235.5:ENST00000468676.5:ENST00000490099.5:ENST00000497993.5:ENST00000482162.1:ENST00000461654.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	15	106	2	1.45545	1.4972949999999998	1.53914	0.0387769	0.014213	0.143072	0.103638
chr6	85629891	85629991	3151316	0	-	0.5	(0.476,0.515]	chr6	293889	54	INTRON	INTRON	ENSG00000271793:SYNCRIP	ENSG00000271793.2:ENSG00000135316.19	ENST00000682083.1:ENST00000683074.1:ENST00000681965.1:ENST00000682504.1:ENST00000682106.1:ENST00000683364.1:ENST00000683436.1:ENST00000684220.1:ENST00000683909.1:ENST00000684462.1:ENST00000616122.5:ENST00000678528.1:ENST00000676637.1:ENST00000677771.1:ENST00000355238.11:ENST00000678878.1:ENST00000677481.1:ENST00000677646.1:ENST00000676630.1:ENST00000678618.1:ENST00000676542.1:ENST00000677059.1:ENST00000444272.2:ENST00000678899.1:ENST00000369622.8:ENST00000678355.1:ENST00000676688.1:ENST00000677514.1:ENST00000678816.1:ENST00000678930.1:ENST00000678589.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	16	110	2	1.41305	1.497265	1.58148	0.0259752	0.0175606	0.12182	0.11319
chr22	20120802	20120898	7478623	0	+	0.5	(0.476,0.515]	chr22	762785	13	INTRON	INTRON	RANBP1	ENSG00000099901.17	ENST00000435265.5:ENST00000432879.5:ENST00000430524.6:ENST00000402752.5:ENST00000488484.1:ENST00000331821.7:ENST00000411892.5:ENST00000416427.5:ENST00000421656.5:ENST00000423859.5:ENST00000418705.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	15	104	2	1.43517	1.497095	1.55902	0.0242957	0.02396	0.130919	0.11952
chr6	31756753	31756834	2843663	0	+	0.506173	(0.476,0.515]	chr6	267819	3	EXON_LNCRNA	EXON_LNCRNA:INTRON	MSH5:MSH5-SAPCD1	ENSG00000204410.16:ENSG00000255152.8	ENST00000375755.8:ENST00000375750.9:ENST00000650702.1:ENST00000493662.6:ENST00000375703.7:ENST00000375740.7:ENST00000423982.6:ENST00000463144.5:ENST00000450148.5:ENST00000468602.5:ENST00000468136.5:ENST00000395853.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	20	140	2	1.40741	1.496905	1.5864	0.0237793	0.0101267	0.129075	0.0850389
chrX	71574693	71574793	7680389	0	+	0.31	(0.28,0.32]	chrX	786485	10	UTR3	UTR3:EXON_MRNA	OGT	ENSG00000147162.14	ENST00000373719.8	protein_coding	protein_coding	protein_coding	protein_coding	64	505	2	1.12354	1.496805	1.87007	0.022332	0.00256998	0.124565	0.045134
chr19	21453225	21453324	7158736	0	-	0.414141	(0.408,0.44]	chr19	723692	13	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ENSG00000268119	ENSG00000268119.7	ENST00000596705.5:ENST00000597444.6:ENST00000594557.1:ENST00000599993.7:ENST00000600469.7:ENST00000656526.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	14	99	2	1.39837	1.496495	1.59462	0.0342165	0.0191739	0.146942	0.108861
chr3	156542116	156542215	1844377	0	-	0.393939	(0.378,0.408]	chr3	185571	27	UTR3	UTR3:EXON_MRNA	SSR3	ENSG00000114850.7	ENST00000265044.7	protein_coding	protein_coding	protein_coding	protein_coding	15	108	2	1.24166	1.49649	1.75132	0.0623885	0.00695593	0.175402	0.0754576
chr1	155914789	155914883	564645	0	-	0.414894	(0.408,0.44]	chr1	67438	6	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	KHDC4	ENSG00000132680.11	ENST00000368321.8:ENST00000368320.7:ENST00000478002.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	16	103	2	1.16962	1.4964400000000002	1.82326	0.044769	0.0141799	0.163255	0.0959618
chr8	23569555	23569653	3715509	0	+	0.397959	(0.378,0.408]	chr8	345238	7	INTRON	INTRON	SLC25A37	ENSG00000147454.14	ENST00000519973.6:ENST00000290075.10:ENST00000417331.6:ENST00000518881.5:ENST00000523930.1:ENST00000523883.5:ENST00000522164.5:ENST00000521637.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	40	270	2	1.18491	1.4963799999999998	1.80785	0.0194529	0.00294667	0.119831	0.0484557
chr19	28492253	28492353	7166017	0	-	0.41	(0.408,0.44]	chr19	724189	240	INTRON	INTRON	ENSG00000283403:ENSG00000267243	ENSG00000283403.1:ENSG00000267243.6	ENST00000592347.5:ENST00000593065.5	lncRNA	lncRNA	lncRNA	lncRNA	21	143	2	1.46471	1.496375	1.52804	0.0173777	0.0126554	0.104301	0.0982897
chr22	19343794	19343893	7553521	0	-	0.515152	(0.476,0.515]	chr22	772184	119	INTRON	INTRON	HIRA	ENSG00000100084.14	ENST00000263208.5:ENST00000340170.8	protein_coding	protein_coding	protein_coding	protein_coding	11	76	2	1.36472	1.49627	1.62782	0.0467985	0.0274391	0.167716	0.123904
chr16	29514885	29514985	6470714	0	-	0.45	(0.44,0.476]	chr16	625147	90	INTRON	INTRON	ENSG00000288632	ENSG00000288632.1	ENST00000675579.1	lncRNA	lncRNA	lncRNA	lncRNA	13	91	2	1.49345	1.49573	1.49801	0.0300375	0.0271885	0.142135	0.123904
chr7	121078145	121078245	3394538	0	+	0.47	(0.44,0.476]	chr7	317710	11	INTRON	INTRON	CPED1	ENSG00000106034.18	ENST00000310396.10:ENST00000428526.5:ENST00000450913.6:ENST00000520801.5:ENST00000423795.5:ENST00000443817.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	41	271	2	1.25669	1.4956	1.73451	0.0141914	0.00315557	0.103638	0.0501803
chr16	28956712	28956774	6334862	0	+	0.483871	(0.476,0.515]	chr16	606674	1	SS5_PROX	SS5_PROX:INTRON	NFATC2IP	ENSG00000176953.13	ENST00000564978.5:ENST00000320805.9:ENST00000562977.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	14	99	2	1.27247	1.49529	1.71811	0.0520408	0.0116533	0.176908	0.0890315
chr3	9417418	9417517	1359083	0	+	0.363636	(0.35,0.378]	chr3	142659	13	INTRON	INTRON	SETD5	ENSG00000168137.20	ENST00000402198.7:ENST00000431285.5:ENST00000683012.1:ENST00000463180.5:ENST00000478475.5:ENST00000415650.5:ENST00000682536.1:ENST00000663774.1:ENST00000665872.1:ENST00000666307.1:ENST00000693430.1:ENST00000691925.1:ENST00000684606.1:ENST00000691175.1:ENST00000688835.1:ENST00000683262.1:ENST00000443339.5:ENST00000406341.5:ENST00000670063.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	14	106	2	1.22528	1.4951949999999998	1.76511	0.0667895	0.00867122	0.183051	0.0842798
chr6	4798103	4798203	2791079	0	+	0.46	(0.44,0.476]	chr6	263598	209	INTRON	INTRON	CDYL	ENSG00000153046.18	ENST00000328908.9:ENST00000491864.1:ENST00000440139.5:ENST00000483019.1:ENST00000397588.8:ENST00000472453.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	11	76	2	1.4592	1.495185	1.53117	0.0377545	0.0342963	0.147255	0.140863
chrX	13314188	13314288	7622192	0	+	0.47	(0.44,0.476]	chrX	780272	3	SS3_PROX	SS3_PROX:INTRON	GS1-600G8.3	ENSG00000231216.1	ENST00000431486.1	lncRNA	lncRNA	lncRNA	lncRNA	12	82	2	1.32393	1.49513	1.66633	0.0439888	0.0243614	0.162255	0.12011
chr8	23529712	23529810	3715104	0	+	0.612245	(0.57,1]	chr8	345213	1	INTRON	INTRON	SLC25A37	ENSG00000147454.14	ENST00000519973.6:ENST00000290075.10:ENST00000417331.6:ENST00000518881.5:ENST00000519192.1:ENST00000520654.1:ENST00000523930.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	35	2	1.34554	1.494845	1.64415	0.0508971	0.0342575	0.176247	0.135558
chr3	171062389	171062488	1863427	0	-	0.424242	(0.408,0.44]	chr3	186789	41	UTR3	UTR3:EXON_MRNA	TNIK	ENSG00000154310.17	ENST00000436636.7	protein_coding	protein_coding	protein_coding	protein_coding	11	71	2	1.34899	1.494805	1.64062	0.0557275	0.0342016	0.165463	0.146891
chr12	53479633	53479728	5143181	0	+	0.326316	(0.32,0.35]	chr12	485458	3	UTR3	UTR3:EXON_MRNA	PCBP2	ENSG00000197111.16	ENST00000546463.6:ENST00000437231.5:ENST00000447282.5:ENST00000359282.9:ENST00000549863.5:ENST00000359462.9:ENST00000552819.5:ENST00000455667.7:ENST00000562264.5:ENST00000550585.5:ENST00000547859.2:ENST00000547048.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	201	1566	2	1.43164	1.494755	1.55787	0.00335366	0.0029455	0.0514633	0.0497776
chrX	73845031	73845130	7837974	0	-	0.484848	(0.476,0.515]	chrX	799611	77	EXON_LNCRNA	EXON_LNCRNA:INTRON	XIST	ENSG00000229807.13	ENST00000650627.1:ENST00000434839.3:ENST00000429829.6:ENST00000650366.1:ENST00000650186.1:ENST00000635841.2:ENST00000650637.1:ENST00000648970.1	lncRNA	lncRNA	lncRNA	lncRNA	16	102	2	1.23251	1.4947249999999999	1.75694	0.0358904	0.0175942	0.152322	0.105143
chr5	10436838	10436937	2318514	0	+	0.282828	(0.28,0.32]	chr5	224765	33	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	MARCHF6	ENSG00000145495.16	ENST00000274140.10:ENST00000606497.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	88	2	1.34841	1.494615	1.64082	0.0525144	0.0422774	0.178179	0.148082
chr1	109216044	109216143	179613	0	+	0.373737	(0.35,0.378]	chr1	19612	10	INTRON	INTRON	SARS1	ENSG00000031698.13	ENST00000234677.7:ENST00000477544.5:ENST00000369923.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	15	110	2	1.44343	1.494555	1.54568	0.0514088	0.0122334	0.158464	0.0969406
chr21	10341546	10341641	7427437	0	-	0.336842	(0.32,0.35]	chr21	757681	7	INTRON	INTRON	ENSG00000277693	ENSG00000277693.2	ENST00000622592.1:ENST00000616952.1:ENST00000667012.1	lncRNA	lncRNA	lncRNA	lncRNA	8	67	2	1.45026	1.4944250000000001	1.53859	0.0622478	0.0534261	0.194723	0.162935
chr7	158903491	158903590	3456608	0	+	0.444444	(0.44,0.476]	chr7	323187	10	EXON_MRNA	EXON_MRNA:INTRON	DYNC2I1	ENSG00000126870.16	ENST00000407559.8:ENST00000444851.5:ENST00000467220.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	17	115	2	1.19201	1.494375	1.79674	0.0501504	0.00717907	0.156383	0.0756118
chr2	167905671	167905771	1258859	0	-	0.41	(0.408,0.44]	chr2	133340	45	INTRON	INTRON	B3GALT1-AS1	ENSG00000235335.3	ENST00000430546.2:ENST00000657553.1:ENST00000670221.1:ENST00000436982.2	lncRNA	lncRNA	lncRNA	lncRNA	8	57	2	1.35739	1.493995	1.6306	0.063317	0.0544158	0.182272	0.177047
chr5	65948087	65948187	2371059	0	+	0.32	(0.28,0.32]	chr5	228472	209	INTRON	INTRON	ERBIN	ENSG00000112851.15	ENST00000380943.6:ENST00000507490.1:ENST00000416865.6:ENST00000380935.5:ENST00000284037.10:ENST00000380938.6:ENST00000511297.5:ENST00000506030.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	14	125	2	1.33618	1.49399	1.6518	0.0465755	0.0193817	0.151522	0.119831
chr9	124715507	124715607	4348657	0	-	0.29	(0.28,0.32]	chr9	399255	1198	INTRON	INTRON	NR6A1	ENSG00000148200.17	ENST00000487099.7:ENST00000373584.7:ENST00000416460.6:ENST00000344523.8	protein_coding	protein_coding	protein_coding	protein_coding	12	106	2	1.32455	1.493985	1.66342	0.0474504	0.029437	0.169423	0.128055
chr1	182384108	182384206	598985	0	-	0.479592	(0.476,0.515]	chr1	71395	62	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	GLUL	ENSG00000135821.19	ENST00000331872.11:ENST00000642379.1:ENST00000311223.9:ENST00000417584.6:ENST00000339526.8:ENST00000491322.1:ENST00000463851.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	77	527	2	1.12026	1.49391	1.86756	0.0183577	6.04511e-4	0.116065	0.0226059
chr11	64770562	64770639	4965223	0	-	0.441558	(0.44,0.476]	chr11	467524	3	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	SF1	ENSG00000168066.21	ENST00000334944.9:ENST00000227503.13:ENST00000377394.7:ENST00000448404.5:ENST00000377390.8:ENST00000377387.5:ENST00000681407.1:ENST00000433274.6:ENST00000486960.5:ENST00000496969.1:ENST00000633899.1:ENST00000413951.5:ENST00000432725.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	25	165	2	1.03711	1.493355	1.9496	0.0510828	0.00280269	0.176696	0.0470322
chr18	779308	779408	6940375	0	-	0.56	(0.515,0.57]	chr18	686519	38	INTRON	INTRON	YES1	ENSG00000176105.14	ENST00000584307.5:ENST00000314574.5:ENST00000577611.1:ENST00000581960.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	22	130	2	1.41727	1.49252	1.56777	0.018658	0.00828511	0.117523	0.0774402
chr4	119433174	119433271	2230488	0	-	0.28866000000000003	(0.28,0.32]	chr4	218500	9	INTRON	INTRON	GTF2IP12	ENSG00000283050.3	ENST00000651444.1:ENST00000634317.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	8	73	2	1.47299	1.4924300000000001	1.51187	0.0598267	0.0597769	0.189982	0.169278
chr11	64773022	64773103	4965250	0	-	0.444444	(0.44,0.476]	chr11	467534	1	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	SF1	ENSG00000168066.21	ENST00000334944.9:ENST00000227503.13:ENST00000377394.7:ENST00000448404.5:ENST00000377390.8:ENST00000377387.5:ENST00000681407.1:ENST00000433274.6:ENST00000633899.1:ENST00000413951.5:ENST00000432725.1:ENST00000482693.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	22	151	2	1.29224	1.4922650000000002	1.69229	0.0258679	0.00753551	0.133676	0.0748659
chr19	16648945	16649044	7150673	0	-	0.434343	(0.408,0.44]	chr19	722447	13	INTRON	INTRON	SMIM7	ENSG00000214046.9	ENST00000465250.6:ENST00000481671.6:ENST00000594662.5:ENST00000597781.5:ENST00000598278.5:ENST00000593409.5:ENST00000487803.5:ENST00000627144.2:ENST00000487416.7:ENST00000593404.5:ENST00000597711.5:ENST00000599310.5:ENST00000397349.6:ENST00000602194.5:ENST00000600740.5:ENST00000461488.5:ENST00000463051.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	55	2	1.45162	1.492125	1.53263	0.0733439	0.0451203	0.190051	0.163518
chr5	131644485	131644584	2719202	0	-	0.414141	(0.408,0.44]	chr5	255631	29	UTR3	UTR3:EXON_MRNA	FNIP1	ENSG00000217128.13	ENST00000510461.6:ENST00000307954.12:ENST00000307968.11	protein_coding	protein_coding	protein_coding	protein_coding	14	96	2	1.14433	1.4918200000000001	1.83931	0.0718003	0.00806984	0.18703	0.0806514
chr8	100933278	100933376	4005781	0	-	0.510204	(0.476,0.515]	chr8	366664	8	INTRON	INTRON	YWHAZ	ENSG00000164924.18	ENST00000395958.6:ENST00000395957.6:ENST00000457309.2:ENST00000395956.7:ENST00000353245.7:ENST00000521309.5:ENST00000522542.5:ENST00000522819.5:ENST00000395953.6:ENST00000395948.6:ENST00000395951.7:ENST00000419477.6:ENST00000521607.5:ENST00000480304.5:ENST00000518736.5:ENST00000517727.5:ENST00000521328.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	15	102	2	1.43993	1.491725	1.54352	0.0323113	0.0165511	0.132927	0.110511
chr1	29175183	29175282	410377	0	-	0.484848	(0.476,0.515]	chr1	49421	18	INTRON	INTRON	SRSF4	ENSG00000116350.18	ENST00000373795.7:ENST00000691479.1:ENST00000466448.4:ENST00000605204.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	34	226	2	1.24568	1.491545	1.73741	0.0184298	0.00362952	0.116493	0.053502
chr20	58676291	58676389	7290439	0	+	0.693878	(0.57,1]	chr20	741764	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	STX16	ENSG00000124222.22	ENST00000361830.7:ENST00000355957.9:ENST00000371141.8:ENST00000359617.8:ENST00000483434.5:ENST00000490700.5:ENST00000371132.8:ENST00000467096.5:ENST00000358029.8:ENST00000438253.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	32	2	1.42298	1.49127	1.55956	0.0510995	0.0448639	0.176696	0.149888
chr8	93733007	93733106	3992313	0	-	0.272727	[0,0.28]	chr8	365419	50	UTR3	UTR3:EXON_MRNA:INTRON	RBM12B	ENSG00000183808.12	ENST00000399300.7:ENST00000520560.6:ENST00000518597.2:ENST00000517700.6:ENST00000519109.6:ENST00000520961.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	15	151	2	1.25228	1.49116	1.73004	0.0491962	0.0214887	0.174117	0.114373
chr12	91583638	91583738	5385053	0	-	0.3	(0.28,0.32]	chr12	513485	764	INTRON	INTRON	ENSG00000289605	ENSG00000289605.1	ENST00000685093.1	lncRNA	lncRNA	lncRNA	lncRNA	10	90	2	1.45235	1.491085	1.52982	0.0543728	0.0379288	0.164972	0.157212
chr3	152317430	152317530	1535473	0	+	0.45	(0.44,0.476]	chr3	159996	151	INTRON	INTRON	MBNL1	ENSG00000152601.18	ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000495875.6:ENST00000324210.10:ENST00000493459.5:ENST00000459747.1:ENST00000460591.5:ENST00000545754.5:ENST00000357472.7:ENST00000324196.9:ENST00000498502.5:ENST00000463374.5:ENST00000485910.5:ENST00000465907.6:ENST00000492948.5:ENST00000485509.5:ENST00000464596.5	protein_coding	protein_coding	protein_coding	protein_coding	32	188	2	0.913571	1.4909355	2.0683	0.0603378	0.00200092	0.19151	0.0407333
chr9	136416484	136416577	4221347	0	+	0.419355	(0.408,0.44]	chr9	387534	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PMPCA	ENSG00000165688.12	ENST00000612553.4:ENST00000371717.8:ENST00000371720.5:ENST00000622209.4:ENST00000399219.7:ENST00000620895.1:ENST00000462616.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	17	117	2	1.31465	1.49059	1.66653	0.0374817	0.00989468	0.140071	0.0877296
chr14	21255882	21255981	5835031	0	-	0.424242	(0.408,0.44]	chr14	554465	9	INTRON	INTRON	HNRNPC	ENSG00000092199.19	ENST00000336053.10:ENST00000553300.6:ENST00000554969.5:ENST00000556142.5:ENST00000554455.5:ENST00000430246.6:ENST00000553753.5:ENST00000555309.5:ENST00000555914.5:ENST00000557442.5:ENST00000556628.5:ENST00000556513.5:ENST00000555883.5:ENST00000557201.5:ENST00000556897.5:ENST00000420743.6:ENST00000554539.5:ENST00000554383.5:ENST00000555215.5:ENST00000555137.5:ENST00000554891.5:ENST00000556226.5:ENST00000555176.5:ENST00000553614.5:ENST00000557336.1:ENST00000557768.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	17	116	2	1.24825	1.490485	1.73272	0.0375059	0.0113502	0.156054	0.0886611
chr2	43959706	43959803	1110245	0	-	0.463918	(0.44,0.476]	chr2	119079	6	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	LRPPRC	ENSG00000138095.20	ENST00000260665.12:ENST00000682308.1:ENST00000683459.1:ENST00000683623.1:ENST00000683125.1:ENST00000683994.1:ENST00000684619.1:ENST00000683833.1:ENST00000682546.1:ENST00000682585.1:ENST00000683220.1:ENST00000683796.1:ENST00000683590.1:ENST00000684306.1:ENST00000683213.1:ENST00000682779.1:ENST00000682885.1:ENST00000684743.1:ENST00000683346.1:ENST00000683072.1:ENST00000682303.1:ENST00000683329.1:ENST00000684383.1:ENST00000682480.1:ENST00000684290.1:ENST00000684341.1:ENST00000682595.1:ENST00000683802.1:ENST00000681961.1:ENST00000683694.1:ENST00000683989.1:ENST00000447246.2:ENST00000409659.6:ENST00000682104.1:ENST00000683934.1:ENST00000681959.1:ENST00000684482.1:ENST00000683082.1:ENST00000467058.2:ENST00000409946.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	19	128	2	1.34473	1.4904600000000001	1.63619	0.0233407	0.0132839	0.127872	0.0944742
chr20	50750980	50751079	7286871	0	+	0.535354	(0.515,0.57]	chr20	741306	6	UTR3	UTR3:EXON_MRNA:INTRON	PARD6B	ENSG00000124171.9	ENST00000371610.7:ENST00000396039.1	protein_coding	protein_coding	protein_coding	protein_coding	9	53	2	1.48539	1.4904549999999999	1.49552	0.0553982	0.0385038	0.165463	0.159277
chr10	5781441	5781541	4544595	0	-	0.55	(0.515,0.57]	chr10	419772	71	INTRON	INTRON	GDI2	ENSG00000057608.17	ENST00000380191.9:ENST00000447751.5:ENST00000380181.7:ENST00000456041.5	protein_coding	protein_coding	protein_coding	protein_coding	9	53	2	1.44237	1.49041	1.53845	0.0475376	0.0456196	0.164236	0.153019
chr18	13022393	13022493	6876889	0	+	0.52	(0.515,0.57]	chr18	681391	28	INTRON	INTRON	CEP192	ENSG00000101639.19	ENST00000325971.12:ENST00000506447.5:ENST00000589596.5:ENST00000513432.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	53	2	1.44237	1.49041	1.53845	0.0475376	0.0456196	0.164236	0.153019
chr7	119751686	119751784	3628855	0	-	0.255102	[0,0.28]	chr7	337320	10	EXON_LNCRNA	EXON_LNCRNA:INTRON	LINC02476	ENSG00000225546.6	ENST00000660268.1:ENST00000431071.5:ENST00000426413.2	lncRNA	lncRNA	lncRNA	lncRNA	17	173	2	1.27473	1.49034	1.70595	0.0559807	0.0115537	0.165571	0.0962115
chr3	42624008	42624108	1406212	0	+	0.34	(0.32,0.35]	chr3	147675	21	INTRON	INTRON	NKTR	ENSG00000114857.19	ENST00000468735.6:ENST00000487466.5:ENST00000429888.5:ENST00000232978.13:ENST00000478488.1:ENST00000465584.5:ENST00000466553.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	15	110	2	1.27059	1.49003	1.70947	0.0333278	0.0328375	0.146554	0.133816
chr7	158810659	158810759	3689625	0	-	0.4	(0.378,0.408]	chr7	342421	112	INTRON	INTRON	ESYT2	ENSG00000117868.18	ENST00000251527.10:ENST00000275418.13:ENST00000652148.1:ENST00000483958.5:ENST00000497111.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	91	2	1.2437	1.489765	1.73583	0.049286	0.019899	0.174117	0.109608
chr2	37199704	37199804	745416	0	+	0.4	(0.378,0.408]	chr2	85357	1	CDS_START	CDS_START:CDS:EXON_MRNA	CEBPZOS	ENSG00000218739.10	ENST00000397064.6:ENST00000470216.1:ENST00000402297.6:ENST00000406711.5:ENST00000392061.6:ENST00000397226.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	59	2	1.45712	1.489655	1.52219	0.0597975	0.0531838	0.189982	0.162538
chr20	32790802	32790901	7256948	0	+	0.50505	(0.476,0.515]	chr20	737157	14	INTRON	INTRON	DNMT3B	ENSG00000088305.19	ENST00000696232.1:ENST00000328111.6:ENST00000696231.1:ENST00000348286.6:ENST00000353855.6:ENST00000696233.1:ENST00000443239.7:ENST00000696234.1:ENST00000696235.1:ENST00000456297.6:ENST00000696236.1:ENST00000201963.3:ENST00000696238.1:ENST00000696239.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	62	2	1.38864	1.4891800000000002	1.58972	0.0547008	0.0427022	0.182743	0.148082
chr4	87136096	87136195	1995838	0	+	0.282828	(0.28,0.32]	chr4	199151	5	UTR3	UTR3:EXON_MRNA	AFF1	ENSG00000172493.23	ENST00000395146.9:ENST00000544085.6:ENST00000307808.10	protein_coding	protein_coding	protein_coding	protein_coding	9	81	2	1.33399	1.48914	1.64429	0.0743182	0.0365539	0.191786	0.153932
chr12	54293975	54294069	5330922	0	-	0.595745	(0.57,1]	chr12	508648	2	INTRON	INTRON	NFE2	ENSG00000123405.14	ENST00000435572.7:ENST00000312156.8:ENST00000540264.2:ENST00000553070.5:ENST00000553198.1	protein_coding	protein_coding	protein_coding	protein_coding	9	32	2	1.46969	1.488705	1.50772	0.0586892	0.0388955	0.167915	0.16071
chr1	225983901	225984001	646299	0	-	0.47	(0.44,0.476]	chr1	76574	13	UTR3	UTR3:EXON_MRNA	SDE2	ENSG00000143751.10	ENST00000272091.8	protein_coding	protein_coding	protein_coding	protein_coding	14	96	2	1.3337	1.488635	1.64357	0.0396627	0.0177224	0.143072	0.11319
chr2	74462428	74462524	1158823	0	-	0.5625	(0.515,0.57]	chr2	124078	12	CDS	CDS:UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MOGS	ENSG00000115275.15	ENST00000448666.7:ENST00000409065.5:ENST00000462189.1:ENST00000462443.2:ENST00000649601.1:ENST00000649075.1:ENST00000649854.1:ENST00000648810.1:ENST00000647915.1:ENST00000690565.1:ENST00000647771.1:ENST00000647723.1:ENST00000452063.7:ENST00000648768.1:ENST00000649777.1:ENST00000647753.1:ENST00000691308.1:ENST00000650523.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	53	2	1.43029	1.4885350000000002	1.54678	0.0645632	0.0324987	0.179192	0.145164
chr19	50803875	50803966	7203184	0	-	0.494505	(0.476,0.515]	chr19	730916	1	INTRON	INTRON	C19orf48	ENSG00000167747.16	ENST00000641834.2:ENST00000596287.6:ENST00000597705.6:ENST00000693315.1:ENST00000597493.6:ENST00000692421.1:ENST00000593287.5:ENST00000601267.5:ENST00000602125.1	transcribed_unitary_pseudogene	retained_intron	transcribed_unitary_pseudogene	retained_intron:processed_transcript	28	193	2	1.3104	1.48834	1.66628	0.0202696	0.00509232	0.12144	0.0625139
chr22	38490356	38490456	7587922	0	-	0.42	(0.408,0.44]	chr22	776723	10	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	DDX17	ENSG00000100201.23	ENST00000403230.3:ENST00000396821.8:ENST00000216019.11:ENST00000475004.6:ENST00000432525.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	57	372	2	1.29374	1.48803	1.68232	0.00879196	0.00301719	0.084878	0.0493883
chr8	38111233	38111333	3734729	0	+	0.52	(0.515,0.57]	chr8	346968	4	SS5_PROX	SS5_PROX:INTRON	ASH2L	ENSG00000129691.16	ENST00000545394.2:ENST00000343823.11:ENST00000517496.5:ENST00000428278.6:ENST00000521652.5:ENST00000524263.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	15	88	2	1.29901	1.4880149999999999	1.67702	0.0394428	0.0122403	0.161534	0.0910127
chr5	134778898	134778995	2490583	0	+	0.453608	(0.44,0.476]	chr5	237905	8	INTRON	INTRON	DDX46	ENSG00000145833.16	ENST00000628477.2:ENST00000452510.7:ENST00000507392.5:ENST00000354283.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	17	118	2	1.11013	1.4878200000000001	1.86551	0.0787241	0.00317041	0.198576	0.051761
chr11	65504234	65504333	4806186	0	+	0.393939	(0.378,0.408]	chr11	446569	67	EXON_LNCRNA	EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MALAT1	ENSG00000251562.9	ENST00000619449.2:ENST00000534336.1:ENST00000616527.4:ENST00000620465.4:ENST00000612781.1:ENST00000618132.1	lncRNA	lncRNA	lncRNA	lncRNA	3557	24021	2	1.45715	1.48782	1.51849	0.0020206	0.0013615	0.04086	0.0339121
chr6	34280176	34280276	3083645	0	-	0.55	(0.515,0.57]	chr6	288610	6	UTR3	UTR3:EXON_MRNA	NUDT3	ENSG00000272325.2	ENST00000607016.2	protein_coding	protein_coding	protein_coding	protein_coding	17	97	2	1.29858	1.4878	1.67702	0.0298647	0.0122403	0.142135	0.0910127
chr22	21843131	21843231	7561141	0	-	0.45	(0.44,0.476]	chr22	773388	349	INTRON	INTRON	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	13	89	2	1.34977	1.48775	1.62573	0.0522828	0.0146931	0.160182	0.106558
chr11	68113501	68113601	4972518	0	-	0.52	(0.515,0.57]	chr11	469439	160	INTRON	INTRON	CHKA	ENSG00000110721.12	ENST00000265689.9:ENST00000356135.9:ENST00000531341.1	protein_coding	protein_coding	protein_coding	protein_coding	7	42	2	1.37301	1.48761	1.60221	0.0752392	0.0581855	0.193891	0.188704
chr4	78806074	78806173	1981682	0	+	0.353535	(0.35,0.378]	chr4	198463	290	INTRON	INTRON	BMP2K	ENSG00000138756.19	ENST00000389010.7:ENST00000502613.3:ENST00000502871.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	65	2	1.26902	1.487545	1.70607	0.0635011	0.0482819	0.19815	0.153283
chr11	117168683	117168781	4869341	0	+	0.316327	(0.28,0.32]	chr11	454464	11	UTR3	UTR3:EXON_MRNA:INTRON	PAFAH1B2	ENSG00000168092.14	ENST00000419197.6:ENST00000527958.6:ENST00000529887.6:ENST00000526888.1:ENST00000530272.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	108	2	1.4463	1.487305	1.52831	0.0388417	0.0353864	0.160515	0.137535
chr9	130793453	130793553	4214659	0	+	0.32	(0.28,0.32]	chr9	386427	786	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000393293.4	protein_coding	protein_coding	protein_coding	protein_coding	12	108	2	1.4463	1.487305	1.52831	0.0388417	0.0353864	0.160515	0.137535
chr13	106558031	106558131	5648830	0	-	0.36	(0.35,0.378]	chr13	538150	10	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	ARGLU1	ENSG00000134884.15	ENST00000400198.8:ENST00000472226.2:ENST00000375926.5:ENST00000360629.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	69	508	2	1.10422	1.48724	1.87026	0.0302333	4.37065e-4	0.129809	0.0188334
chr3	186785296	186785393	1586106	0	+	0.402062	(0.378,0.408]	chr3	164277	3	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	EIF4A2	ENSG00000156976.17	ENST00000426808.5:ENST00000323963.10:ENST00000440191.6:ENST00000425053.5:ENST00000429589.5:ENST00000495049.5:ENST00000465267.5:ENST00000465032.5:ENST00000485101.5:ENST00000475653.5:ENST00000443963.5:ENST00000467585.1:ENST00000498746.1:ENST00000466362.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	23	166	2	1.14171	1.4871050000000001	1.8325	0.0424329	0.00437604	0.161763	0.0584648
chr3	42630154	42630252	1406276	0	+	0.234694	[0,0.28]	chr3	147680	31	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	NKTR	ENSG00000114857.19	ENST00000468735.6:ENST00000429888.5:ENST00000232978.13:ENST00000465584.5:ENST00000466553.1:ENST00000498730.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	34	343	2	1.2396	1.48695	1.7343	0.0414165	0.00352747	0.146067	0.0546236
chr10	45992536	45992635	4430587	0	+	0.373737	(0.35,0.378]	chr10	408492	33	INTRON	INTRON	TIMM23	ENSG00000265354.4	ENST00000580018.4	protein_coding	protein_coding	protein_coding	protein_coding	12	91	2	1.43939	1.48678	1.53417	0.0418517	0.0271808	0.147271	0.136494
chr11	66621928	66622026	4810852	0	+	0.520408	(0.515,0.57]	chr11	447861	6	INTRON	INTRON	RBM14-RBM4:RBM14	ENSG00000248643.5:ENSG00000239306.5	ENST00000412278.2:ENST00000393979.3:ENST00000511114.1:ENST00000310137.5:ENST00000409372.1:ENST00000421355.1:ENST00000443702.1:ENST00000500635.2:ENST00000409738.4:ENST00000461478.1:ENST00000496694.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	40	227	2	1.16606	1.486645	1.80723	0.0244859	9.79636e-4	0.12011	0.0287765
chr1	26699038	26699138	51201	0	+	0.34	(0.32,0.35]	chr1	6542	11	INTRON	INTRON	ARID1A	ENSG00000117713.21	ENST00000430799.7:ENST00000324856.13:ENST00000637465.1:ENST00000457599.6	protein_coding	protein_coding	protein_coding	protein_coding	8	66	2	1.42542	1.486415	1.54741	0.0718205	0.0473733	0.187046	0.169265
chr3	28246772	28246871	1390595	0	+	0.292929	(0.28,0.32]	chr3	145630	45	INTRON	INTRON	CMC1	ENSG00000187118.14	ENST00000477739.1:ENST00000423894.5:ENST00000466830.6:ENST00000334841.10:ENST00000418849.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	80	2	1.4428	1.48631	1.52982	0.0712927	0.0379288	0.185716	0.157212
chr9	130744954	130745054	4214174	0	+	0.4	(0.378,0.408]	chr9	386427	301	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000393293.4	protein_coding	protein_coding	protein_coding	protein_coding	12	87	2	1.38255	1.4862	1.58985	0.040607	0.0290335	0.1451	0.141186
chr11	3696800	3696892	4894136	0	-	0.326087	(0.32,0.35]	chr11	458780	1	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	NUP98	ENSG00000110713.17	ENST00000359171.8:ENST00000324932.12:ENST00000650171.1:ENST00000355260.7:ENST00000429801.5:ENST00000488828.1:ENST00000529063.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	17	137	2	1.23789	1.48618	1.73447	0.058889	0.00676377	0.167915	0.0741642
chr1	35735697	35735797	422532	0	-	0.36	(0.35,0.378]	chr1	50898	37	UTR3	UTR3:EXON_MRNA:INTRON	CLSPN	ENSG00000092853.14	ENST00000251195.9:ENST00000318121.8	protein_coding	protein_coding	protein_coding	protein_coding	11	84	2	1.31002	1.48611	1.6622	0.0562395	0.0263261	0.184114	0.122221
chr5	146497135	146497235	2516021	0	+	0.45	(0.44,0.476]	chr5	240376	37	INTRON	INTRON	TCERG1	ENSG00000113649.13	ENST00000296702.9:ENST00000679501.2:ENST00000394421.7:ENST00000549332.1:ENST00000506524.5:ENST00000505285.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	17	117	2	1.47156	1.485935	1.50031	0.0212253	0.0195301	0.120063	0.113116
chr2	26050878	26050978	713267	0	+	0.43	(0.408,0.44]	chr2	82440	82	INTRON	INTRON	RAB10	ENSG00000084733.11	ENST00000264710.5:ENST00000495146.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	12	82	2	1.36246	1.4857550000000002	1.60905	0.0386802	0.02971	0.159946	0.129022
chr4	39708072	39708172	1953091	0	+	0.58	(0.57,1]	chr4	195630	93	INTRON	INTRON	UBE2K	ENSG00000078140.14	ENST00000510934.5:ENST00000261427.10:ENST00000438068.6:ENST00000513231.5:ENST00000503368.5:ENST00000445950.2:ENST00000510719.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	24	80	2	1.15726	1.4857	1.81414	0.0308522	0.00327402	0.13151	0.0526715
chr19	57861732	57861832	7106155	0	+	0.38	(0.378,0.408]	chr19	713245	17	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ZNF587	ENSG00000198466.12	ENST00000339656.8:ENST00000419854.1:ENST00000596433.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	18	128	2	1.40752	1.4855200000000002	1.56352	0.0279258	0.0128449	0.124427	0.0990564
chrX	44878686	44878786	7648657	0	+	0.41	(0.408,0.44]	chrX	782726	43	INTRON	INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000675440.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000621147.5:ENST00000475233.1:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	49	2	1.43792	1.4852750000000001	1.53263	0.0733439	0.062843	0.196433	0.190051
chr16	16570392	16570492	6311566	0	+	0.45	(0.44,0.476]	chr16	604098	704	INTRON	INTRON	ENSG00000260126	ENSG00000260126.2	ENST00000567465.2	lncRNA	lncRNA	lncRNA	lncRNA	9	62	2	1.47433	1.485265	1.4962	0.0595438	0.0392301	0.16883600000000001	0.161534
chr1	148749789	148749886	213789	0	+	0.350515	(0.35,0.378]	chr1	23730	4	UTR3	UTR3:EXON_MRNA	NUDT4B	ENSG00000177144.8	ENST00000322209.5	protein_coding	protein_coding	protein_coding	protein_coding	12	90	2	1.33846	1.485185	1.63191	0.0687435	0.0149226	0.184298	0.107378
chr11	65434955	65435055	4805892	0	+	0.4	(0.378,0.408]	chr11	446554	123	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	59	399	2	1.46125	1.4849649999999999	1.50868	0.00743342	0.00362795	0.0746011	0.0554791
chr17	27097012	27097112	6579795	0	+	0.31	(0.28,0.32]	chr17	639586	2	INTRON	INTRON	ENSG00000285822	ENSG00000285822.1	ENST00000649401.1	lncRNA	lncRNA	lncRNA	lncRNA	24	210	2	1.32423	1.484925	1.64562	0.0334727	0.00710815	0.134145	0.0756118
chr5	146500663	146500759	2516057	0	+	0.354167	(0.35,0.378]	chr5	240386	3	INTRON	INTRON	TCERG1	ENSG00000113649.13	ENST00000296702.9:ENST00000679501.2:ENST00000394421.7:ENST00000549332.1:ENST00000506524.5:ENST00000505285.5:ENST00000504116.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	60	2	1.21404	1.4848249999999998	1.75561	0.0739399	0.0632774	0.19754	0.190914
chrX	136920743	136920843	7727575	0	+	0.35	(0.32,0.35]	chrX	790761	1	SS3_PROX	SS3_PROX:INTRON	TM9SF5P	ENSG00000234062.9	ENST00000650669.2:ENST00000687469.1:ENST00000431464.6:ENST00000685550.1:ENST00000685929.1:ENST00000424306.5:ENST00000687978.1:ENST00000688713.1:ENST00000693626.1:ENST00000686432.1:ENST00000693698.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	15	123	2	1.40017	1.484645	1.56912	0.0314842	0.0247709	0.131869	0.13151
chr17	47149426	47149525	6788978	0	-	0.454545	(0.44,0.476]	chr17	669573	51	INTRON	INTRON	CDC27	ENSG00000004897.12	ENST00000066544.8:ENST00000531206.5:ENST00000533415.5:ENST00000527547.5:ENST00000526866.5:ENST00000525495.6:ENST00000574304.5:ENST00000575830.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	21	136	2	1.39862	1.48453	1.57044	0.0206907	0.0138251	0.110999	0.10247
chr19	11100756	11100845	7016928	0	+	0.449438	(0.44,0.476]	chr19	697427	3	SS5_PROX	SS5_PROX:INTRON	LDLR	ENSG00000130164.14	ENST00000557933.5:ENST00000558518.6:ENST00000545707.5:ENST00000535915.5:ENST00000455727.6:ENST00000557958.1:ENST00000558013.5:ENST00000252444.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	69	2	1.34221	1.484475	1.62674	0.0656882	0.0253995	0.181162	0.133676
chr10	101811671	101811766	4680908	0	-	0.368421	(0.35,0.378]	chr10	432012	10	INTRON	INTRON	OGA	ENSG00000198408.14	ENST00000439817.5:ENST00000361464.8:ENST00000357797.9:ENST00000370094.7:ENST00000429860.1	protein_coding	protein_coding	protein_coding	protein_coding	28	205	2	1.38143	1.484105	1.58678	0.0255929	0.00480501	0.120293	0.0638089
chr10	73250563	73250659	4648984	0	-	0.4375	(0.408,0.44]	chr10	427711	14	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	MRPS16	ENSG00000182180.14	ENST00000479005.1:ENST00000372945.8:ENST00000372940.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	20	140	2	1.16962	1.4840900000000001	1.79856	0.044769	0.00571563	0.163255	0.0657377
chr2	85544998	85545092	821627	0	+	0.574468	(0.57,1]	chr2	91572	14	UTR3	UTR3:EXON_MRNA	MAT2A	ENSG00000168906.13	ENST00000306434.8	protein_coding	protein_coding	protein_coding	protein_coding	54	182	2	1.35965	1.4840900000000001	1.60853	0.00503147	0.00128905	0.0620252	0.0333764
chr12	57062618	57062718	5336681	0	-	0.45	(0.44,0.476]	chr12	510346	1	SS5_PROX	SS5_PROX:INTRON	NEMP1	ENSG00000166881.10	ENST00000300128.9:ENST00000379391.7:ENST00000554340.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	75	2	1.26546	1.48394	1.70242	0.0568404	0.0282713	0.167723	0.137721
chrX	71574193	71574293	7680384	0	+	0.32	(0.28,0.32]	chrX	786485	5	UTR3	UTR3:EXON_MRNA	OGT	ENSG00000147162.14	ENST00000373719.8:ENST00000488174.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	30	232	2	1.0067	1.483915	1.96113	0.0517149	0.00508116	0.176696	0.0623813
chr17	63763515	63763615	6811879	0	-	0.51	(0.476,0.515]	chr17	673177	1	SS5_PROX	SS5_PROX:INTRON	CCDC47	ENSG00000108588.15	ENST00000225726.10:ENST00000403162.7:ENST00000582252.1	protein_coding	protein_coding	protein_coding	protein_coding	8	55	2	1.28655	1.483735	1.68092	0.075974	0.0474026	0.194842	0.169265
chr1	155471290	155471390	561976	0	-	0.43	(0.408,0.44]	chr1	67095	83	INTRON	INTRON	ASH1L	ENSG00000116539.14	ENST00000676814.1:ENST00000392403.8:ENST00000368346.7:ENST00000677213.1:ENST00000678117.1:ENST00000679097.1:ENST00000679333.1:ENST00000677042.1:ENST00000678699.1:ENST00000677825.1:ENST00000679133.1:ENST00000548830.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	17	113	2	1.4825	1.48355	1.4846	0.034616	0.0132285	0.136674	0.0999551
chr6	16265817	16265917	2826248	0	+	0.51	(0.476,0.515]	chr6	265366	73	INTRON	INTRON	GMPR	ENSG00000137198.10	ENST00000259727.5:ENST00000543191.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	138	926	2	1.2501	1.483505	1.71691	0.0112777	4.30688e-4	0.0885294	0.018618
chr22	38484835	38484935	7587863	0	-	0.39	(0.378,0.408]	chr22	776711	15	UTR3	UTR3:EXON_MRNA	DDX17	ENSG00000100201.23	ENST00000403230.3:ENST00000396821.8	protein_coding	protein_coding	protein_coding	protein_coding	21	150	2	1.45666	1.48333	1.51	0.0184639	0.0137305	0.108861	0.102445
chr10	35346792	35346892	4424605	0	+	0.54	(0.515,0.57]	chr10	407899	92	INTRON	INTRON	CCNY	ENSG00000108100.18	ENST00000374706.5:ENST00000490012.6:ENST00000493157.6:ENST00000374704.8:ENST00000265375.13:ENST00000339497.7:ENST00000492478.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	14	78	2	1.24649	1.4833150000000002	1.72014	0.041089	0.0185015	0.161534	0.108861
chr9	130740754	130740854	4214132	0	+	0.42	(0.408,0.44]	chr9	386427	259	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000393293.4	protein_coding	protein_coding	protein_coding	protein_coding	12	85	2	1.3378	1.48306	1.62832	0.050805	0.0212908	0.175989	0.113423
chr7	92583998	92584098	3570866	0	-	0.4	(0.378,0.408]	chr7	332758	20	INTRON	INTRON	FAM133B	ENSG00000234545.8	ENST00000445716.6:ENST00000438306.5:ENST00000415397.6:ENST00000481407.5:ENST00000427372.5:ENST00000480397.5:ENST00000456502.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	76	2	1.28658	1.483	1.67942	0.0499541	0.0336706	0.17488	0.134145
chr17	20871870	20871970	6576097	0	+	0.36	(0.35,0.378]	chr17	639372	28	INTRON	INTRON	CCDC144NL-AS1	ENSG00000233098.10	ENST00000577537.5:ENST00000692759.1:ENST00000443508.8:ENST00000692309.1:ENST00000439794.6:ENST00000417232.6:ENST00000583962.2:ENST00000582324.5:ENST00000577860.5	lncRNA	lncRNA	lncRNA	lncRNA	30	221	2	1.23723	1.48299	1.72875	0.0291791	0.00350757	0.128055	0.0545177
chr11	86039598	86039698	5014548	0	-	0.35	(0.32,0.35]	chr11	473022	76	INTRON	INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000630913.2:ENST00000528398.5:ENST00000356360.9:ENST00000534412.5:ENST00000531558.1:ENST00000531930.5:ENST00000532041.5:ENST00000525162.5:ENST00000528256.1:ENST00000528411.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	12	95	2	1.38564	1.482935	1.58023	0.0793006	0.0155051	0.199711	0.109094
chr4	70909645	70909745	1970578	0	+	0.35	(0.32,0.35]	chr4	197571	67	INTRON	INTRON	MOB1B	ENSG00000173542.9	ENST00000502869.5:ENST00000509041.5:ENST00000309395.7:ENST00000396051.2:ENST00000511449.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	11	81	2	1.23259	1.482885	1.73318	0.0530143	0.0462868	0.179488	0.150684
chr4	78843727	78843827	1982063	0	+	0.27	[0,0.28]	chr4	198485	8	INTRON	INTRON	BMP2K	ENSG00000138756.19	ENST00000389010.7:ENST00000502613.3:ENST00000502871.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	13	132	2	1.44922	1.4826899999999998	1.51616	0.0495121	0.0275079	0.156383	0.136901
chr2	131269153	131269252	866072	0	+	0.40404	(0.378,0.408]	chr2	97278	40	INTRON	INTRON	PLEKHB2	ENSG00000115762.17	ENST00000404460.5	protein_coding	protein_coding	protein_coding	protein_coding	11	79	2	1.38218	1.4825849999999998	1.58299	0.0444424	0.0329718	0.162728	0.133816
chr1	203806612	203806712	296790	0	+	0.36	(0.35,0.378]	chr1	34134	32	INTRON	INTRON	ZC3H11A:ZBED6	ENSG00000058673.17:ENSG00000257315.3	ENST00000367210.3:ENST00000453771.5:ENST00000432282.5:ENST00000638800.1:ENST00000367214.5:ENST00000639812.1:ENST00000367212.7:ENST00000332127.8:ENST00000550078.2:ENST00000495527.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	70	2	1.21404	1.482425	1.75081	0.0632774	0.0427459	0.19754	0.148082
chr10	74005558	74005657	4454575	0	+	0.363636	(0.35,0.378]	chr10	411385	68	INTRON	INTRON	VCL	ENSG00000035403.18	ENST00000623461.3:ENST00000372755.7:ENST00000624354.3:ENST00000211998.10:ENST00000478896.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	15	112	2	1.22529	1.48236	1.73943	0.0588498	0.00965789	0.167915	0.0871579
chr21	46200652	46200752	7470581	0	-	0.34	(0.32,0.35]	chr21	761464	40	INTRON	INTRON	LSS	ENSG00000160285.15	ENST00000356396.8:ENST00000397728.8:ENST00000457828.6:ENST00000522411.5	protein_coding	protein_coding	protein_coding	protein_coding	26	207	2	1.27876	1.48224	1.68572	0.0335109	0.00472358	0.134145	0.063281
chr7	128746162	128746260	3408444	0	+	0.5	(0.476,0.515]	chr7	318422	64	INTRON	INTRON	CALU	ENSG00000128595.17	ENST00000535011.6:ENST00000542996.6:ENST00000249364.9:ENST00000449187.6:ENST00000479257.5	protein_coding	protein_coding	protein_coding	protein_coding	24	159	2	1.41305	1.48218	1.55131	0.0259752	0.00628241	0.12182	0.0722266
chr16	89438615	89438715	6543082	0	-	0.47	(0.44,0.476]	chr16	634281	69	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	54	2	1.35267	1.4821499999999999	1.61163	0.060678	0.0598319	0.192323	0.169278
chr19	39435895	39435949	7182462	0	-	0.685185	(0.57,1]	chr19	726287	1	UTR5	UTR5:EXON_MRNA	RPS16	ENSG00000105193.9	ENST00000251453.8:ENST00000339471.8:ENST00000599539.5:ENST00000601655.5:ENST00000601390.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	140	457	2	1.16512	1.4819200000000001	1.79872	0.00586575	1.04668e-4	0.0690758	0.00920724
chr4	151101662	151101760	2065059	0	+	0.326531	(0.32,0.35]	chr4	204382	1	INTRON	INTRON	RPS3A	ENSG00000145425.10	ENST00000509736.5:ENST00000274065.9:ENST00000507485.1:ENST00000505243.5:ENST00000514682.5:ENST00000515818.5:ENST00000512690.5:ENST00000508783.5:ENST00000512797.5:ENST00000507327.5:ENST00000515792.5:ENST00000506126.5:ENST00000510993.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	19	159	2	1.47728	1.48178	1.48628	0.0274903	0.0170461	0.136819	0.104099
chr2	15536851	15536951	1072918	0	-	0.4	(0.378,0.408]	chr2	114452	3	SS3_PROX	SS3_PROX:INTRON	NBAS	ENSG00000151779.13	ENST00000281513.10	protein_coding	protein_coding	protein_coding	protein_coding	11	77	2	1.43665	1.48159	1.52653	0.0669652	0.0217942	0.183051	0.123836
chr20	32784959	32785059	7256883	0	+	0.3	(0.28,0.32]	chr20	737137	1	SS5_PROX	SS5_PROX:INTRON	DNMT3B	ENSG00000088305.19	ENST00000696232.1:ENST00000328111.6:ENST00000696231.1:ENST00000348286.6:ENST00000353855.6:ENST00000696233.1:ENST00000443239.7:ENST00000696234.1:ENST00000696235.1:ENST00000456297.6:ENST00000696236.1:ENST00000696237.1:ENST00000201963.3:ENST00000696238.1:ENST00000696239.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	14	122	2	1.33399	1.48151	1.62903	0.0743182	0.0114994	0.191786	0.0958308
chr3	183986319	183986415	1882304	0	-	0.5	(0.476,0.515]	chr3	188197	10	UTR3	UTR3:EXON_MRNA:INTRON	ABCC5	ENSG00000114770.17	ENST00000334444.11:ENST00000265586.10:ENST00000437205.5:ENST00000382494.6:ENST00000392579.6:ENST00000443376.5:ENST00000427120.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	54	2	1.43644	1.4812949999999998	1.52615	0.0739267	0.047372	0.190914	0.169265
chr4	121816741	121816841	2233551	0	-	0.34	(0.32,0.35]	chr4	218763	4	UTR3	UTR3:EXON_MRNA	CCNA2	ENSG00000145386.11	ENST00000274026.10	protein_coding	protein_coding	protein_coding	protein_coding	25	198	2	1.35342	1.480885	1.60835	0.0301299	0.00612486	0.129377	0.0708525
chr14	37090286	37090386	5877190	0	-	0.53	(0.515,0.57]	chr14	558013	2149	INTRON	INTRON	SLC25A21	ENSG00000183032.12	ENST00000331299.6:ENST00000555449.5:ENST00000557611.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	46	2	1.32981	1.4808249999999998	1.63184	0.0640038	0.0545832	0.199279	0.165292
chr9	131173356	131173455	4216120	0	+	0.333333	(0.32,0.35]	chr9	386613	89	INTRON	INTRON	NUP214	ENSG00000126883.19	ENST00000695497.1:ENST00000695498.1:ENST00000695496.1:ENST00000695495.1:ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000525980.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	102	2	1.32056	1.4807549999999998	1.64095	0.0398275	0.0295558	0.161534	0.128413
chr2	107729346	107729446	1205843	0	-	0.3	(0.28,0.32]	chr2	128532	117	INTRON	INTRON	LINC01885:ENSG00000286769	ENSG00000237880.2:ENSG00000286769.1	ENST00000654481.1:ENST00000669817.1	lncRNA	lncRNA	lncRNA	lncRNA	12	106	2	1.28228	1.48059	1.6789	0.0712835	0.017572	0.185716	0.11319
chr14	103691759	103691858	5828292	0	+	0.474747	(0.44,0.476]	chr14	553132	38	INTRON	INTRON	KLC1	ENSG00000126214.22	ENST00000348520.10:ENST00000334553.11:ENST00000555836.5:ENST00000347839.10:ENST00000452929.6:ENST00000554280.5:ENST00000557450.5:ENST00000554228.5:ENST00000634686.1:ENST00000246489.11:ENST00000537046.6:ENST00000535194.2:ENST00000538504.6:ENST00000557143.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	15	102	2	1.11013	1.4798200000000001	1.84951	0.0787241	0.00567535	0.198576	0.0678837
chr4	126710783	126710883	2237818	0	-	0.31	(0.28,0.32]	chr4	219029	121	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	10	76	2	1.1967	1.479815	1.76293	0.0766478	0.061138	0.196164	0.193423
chr12	121797422	121797519	5439444	0	-	0.57732000000000006	(0.57,1]	chr12	520128	8	INTRON	INTRON	RHOF:LINC01089	ENSG00000139725.8:ENSG00000212694.8	ENST00000546227.5:ENST00000541657.5:ENST00000545544.1:ENST00000429892.5:ENST00000542933.5:ENST00000537157.5:ENST00000428029.6:ENST00000541694.5:ENST00000543167.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA:processed_transcript	10	35	2	1.33537	1.47979	1.62421	0.0512131	0.0376752	0.157915	0.156361
chr3	196072252	196072352	1897454	0	-	0.33	(0.32,0.35]	chr3	189967	1	SS3_PROX	SS3_PROX:INTRON	TFRC	ENSG00000072274.13	ENST00000420415.5:ENST00000360110.9:ENST00000392396.7:ENST00000421258.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	17	132	2	1.46859	1.4796900000000002	1.49079	0.0399069	0.0142162	0.14308	0.103638
chr5	1572486	1572586	2565713	0	-	0.45	(0.44,0.476]	chr5	245754	2	SS3_PROX	SS3_PROX:INTRON	SDHAP3	ENSG00000185986.13	ENST00000652578.1:ENST00000684972.1:ENST00000690867.1:ENST00000689786.1:ENST00000515467.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	12	83	2	1.41932	1.47933	1.53934	0.0391653	0.0286379	0.161534	0.126977
chrX	136869848	136869943	7897571	0	-	0.421053	(0.408,0.44]	chrX	804140	8	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	RBMX	ENSG00000147274.14	ENST00000561733.5:ENST00000431446.7:ENST00000496459.2:ENST00000568578.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	17	119	2	1.45747	1.47925	1.50103	0.0237058	0.0198961	0.129075	0.109608
chr4	41958634	41958733	1955718	0	+	0.313131	(0.28,0.32]	chr4	195904	46	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TMEM33	ENSG00000109133.13	ENST00000325094.9:ENST00000504986.6	protein_coding	protein_coding	protein_coding	protein_coding	13	117	2	1.39368	1.4792450000000001	1.56481	0.0390633	0.0339805	0.146815	0.143072
chr20	63876969	63877068	7300805	0	+	0.494949	(0.476,0.515]	chr20	743108	7	INTRON	INTRON	TPD52L2	ENSG00000101150.18	ENST00000611972.4:ENST00000615907.4:ENST00000369927.8:ENST00000346249.9:ENST00000348257.9:ENST00000352482.8:ENST00000351424.8:ENST00000217121.9:ENST00000358548.4	protein_coding	protein_coding	protein_coding	protein_coding	14	95	2	1.23014	1.4792049999999999	1.72827	0.062699	0.00969651	0.175964	0.0874888
chr20	49282515	49282614	7284646	0	+	0.393939	(0.378,0.408]	chr20	741065	3	INTRON	INTRON	ZFAS1	ENSG00000177410.13	ENST00000371743.8:ENST00000417721.5:ENST00000441722.5:ENST00000450535.5:ENST00000458653.5:ENST00000428008.6:ENST00000620594.2:ENST00000652916.1:ENST00000326677.9:ENST00000659056.1	lncRNA	lncRNA	lncRNA	lncRNA	39	285	2	1.32819	1.47884	1.62949	0.0144206	0.00422511	0.104861	0.0572185
chr2	175141966	175142066	1272078	0	-	0.29	(0.28,0.32]	chr2	134470	51	INTRON	INTRON	ATF2	ENSG00000115966.18	ENST00000345739.9:ENST00000426833.7:ENST00000264110.7:ENST00000409437.5:ENST00000409635.5:ENST00000428760.5:ENST00000392544.5:ENST00000417080.5:ENST00000456655.5:ENST00000421438.5:ENST00000429579.5:ENST00000415955.5:ENST00000409499.5:ENST00000435231.6:ENST00000437522.5:ENST00000409833.5:ENST00000413123.5:ENST00000445349.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	10	83	2	1.35386	1.478645	1.60343	0.0669889	0.0432643	0.183051	0.162255
chr2	38750194	38750294	1099872	0	-	0.39	(0.378,0.408]	chr2	118011	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	SRSF7	ENSG00000115875.19	ENST00000446327.6:ENST00000313117.11:ENST00000425778.5:ENST00000425941.6:ENST00000409276.5:ENST00000431066.5:ENST00000443213.5:ENST00000415527.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	58	2	1.39189	1.4785949999999999	1.5653	0.0751636	0.043739	0.193731	0.162255
chr11	86020388	86020486	5014349	0	-	0.326531	(0.32,0.35]	chr11	472995	51	INTRON	INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000630913.2:ENST00000528398.5:ENST00000356360.9:ENST00000534412.5:ENST00000531771.5:ENST00000531558.1:ENST00000531930.5:ENST00000532041.5:ENST00000525162.5:ENST00000528256.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	21	146	2	1.13649	1.47858	1.82067	0.0382588	0.0163349	0.158352	0.101571
chr5	149501374	149501474	2750566	0	-	0.45	(0.44,0.476]	chr5	259005	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	CSNK1A1:ENSG00000230551	ENSG00000113712.19:ENSG00000230551.4	ENST00000261798.10:ENST00000377843.8:ENST00000657001.1:ENST00000499521.2:ENST00000515768.6:ENST00000606719.6:ENST00000657462.1:ENST00000661952.1:ENST00000504676.5:ENST00000515435.5:ENST00000662268.1:ENST00000657706.1:ENST00000606826.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	18	121	2	1.42979	1.478505	1.52722	0.0201407	0.0188139	0.11792	0.109913
chr21	37368532	37368632	7406238	0	+	0.42	(0.408,0.44]	chr21	754845	4	SS5_PROX	SS5_PROX:INTRON	DYRK1A	ENSG00000157540.22	ENST00000646523.1:ENST00000647425.1:ENST00000647188.2:ENST00000647504.1:ENST00000644942.1:ENST00000338785.8:ENST00000643624.1:ENST00000643551.1:ENST00000426672.6	protein_coding	protein_coding	protein_coding	protein_coding	15	101	2	1.24846	1.478305	1.70815	0.0421865	0.0159677	0.161744	0.101453
chr15	41299938	41300038	6004548	0	+	0.33	(0.32,0.35]	chr15	571273	20	EXON_LNCRNA	EXON_LNCRNA:INTRON	OIP5-AS1	ENSG00000247556.6	ENST00000500949.6:ENST00000501665.2	lncRNA	lncRNA	lncRNA	lncRNA	15	120	2	1.21472	1.4782199999999999	1.74172	0.0629961	0.0100556	0.176783	0.0882152
chr16	16543102	16543202	6311293	0	+	0.33	(0.32,0.35]	chr16	604098	431	INTRON	INTRON	ENSG00000260126	ENSG00000260126.2	ENST00000567465.2	lncRNA	lncRNA	lncRNA	lncRNA	11	89	2	1.30436	1.478075	1.65179	0.0642897	0.0245569	0.178531	0.131869
chr2	71410171	71410270	807830	0	+	0.40404	(0.378,0.408]	chr2	90285	10	INTRON	INTRON	ZNF638	ENSG00000075292.19	ENST00000409544.5:ENST00000264447.9:ENST00000487638.5:ENST00000494241.5:ENST00000409407.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	13	90	2	1.37293	1.47796	1.58299	0.0329718	0.0317131	0.144715	0.133816
chr16	16503017	16503117	6310892	0	+	0.44	(0.408,0.44]	chr16	604098	30	INTRON	INTRON	ENSG00000260126	ENSG00000260126.2	ENST00000567465.2	lncRNA	lncRNA	lncRNA	lncRNA	11	76	2	1.38001	1.47784	1.57567	0.0444754	0.033074	0.162826	0.133898
chr16	2753577	2753645	6279825	0	+	0.411765	(0.408,0.44]	chr16	600757	3	UTR5	UTR5:EXON_MRNA:INTRON	SRRM2	ENSG00000167978.17	ENST00000576924.5:ENST00000301740.13:ENST00000575009.5:ENST00000576894.5:ENST00000575701.4:ENST00000630499.2:ENST00000576415.5:ENST00000571378.5:ENST00000574340.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	68	2	1.4609	1.4778	1.4947	0.0566065	0.0340889	0.167352	0.146815
chr17	76735185	76735283	6844236	0	-	0.44898	(0.44,0.476]	chr17	677087	12	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SRSF2	ENSG00000161547.17	ENST00000392485.2:ENST00000359995.10:ENST00000585202.5:ENST00000582449.5:ENST00000586778.1:ENST00000452355.7:ENST00000589919.1:ENST00000508921.7:ENST00000592676.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	56	2	1.43625	1.477675	1.5191	0.063142	0.0526241	0.197183	0.160983
chr7	128559323	128559423	3407637	0	+	0.36	(0.35,0.378]	chr7	318333	252	INTRON	INTRON	ENSG00000280828	ENSG00000280828.1	ENST00000479267.2	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	15	109	2	1.40928	1.47748	1.54568	0.0566272	0.0122334	0.167395	0.0969406
chr10	6166208	6166308	4386207	0	+	0.58	(0.57,1]	chr10	404834	18	INTRON	INTRON	PFKFB3	ENSG00000170525.21	ENST00000379789.8:ENST00000536985.6:ENST00000639949.1	protein_coding	protein_coding	protein_coding	protein_coding	11	39	2	1.42298	1.4774349999999998	1.53189	0.0510995	0.0259412	0.176696	0.121677
chr20	6029125	6029225	7230783	0	+	0.4	(0.378,0.408]	chr20	734856	4	SS5_PROX	SS5_PROX:INTRON	CRLS1	ENSG00000088766.12	ENST00000452938.5:ENST00000378863.9:ENST00000378868.4:ENST00000489345.5:ENST00000464921.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	81	2	1.41307	1.47735	1.54163	0.0510067	0.0293591	0.176593	0.128055
chr15	50604492	50604583	6172440	0	-	0.494505	(0.476,0.515]	chr15	588283	7	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	TRPM7	ENSG00000092439.16	ENST00000646667.1:ENST00000560955.5:ENST00000560638.1	protein_coding	protein_coding	protein_coding	protein_coding	16	106	2	1.44343	1.4772699999999999	1.51111	0.0388521	0.013526	0.143072	0.101363
chr7	105011210	105011310	3601063	0	-	0.3	(0.28,0.32]	chr7	336035	274	INTRON	INTRON	LINC01004	ENSG00000228393.5	ENST00000450686.1:ENST00000655204.2:ENST00000445184.1	lncRNA	lncRNA	lncRNA	lncRNA	13	114	2	1.36059	1.47722	1.59385	0.057669	0.0190086	0.167723	0.118802
chr1	229517479	229517579	653344	0	-	0.35	(0.32,0.35]	chr1	77417	10	UTR3	UTR3:EXON_MRNA	ABCB10	ENSG00000135776.5	ENST00000344517.5	protein_coding	protein_coding	protein_coding	protein_coding	10	81	2	1.33779	1.47685	1.61591	0.0707935	0.0277247	0.184528	0.137011
chr6	104788710	104788809	3171770	0	-	0.373737	(0.35,0.378]	chr6	295866	14	INTRON	INTRON	HACE1	ENSG00000085382.12	ENST00000262903.9:ENST00000416605.6:ENST00000369125.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	59	2	1.34146	1.47683	1.6122	0.0634598	0.0616849	0.19806000000000001	0.174021
chr20	35729011	35729111	7336416	0	-	0.36	(0.35,0.378]	chr20	747463	3	SS5_PROX	SS5_PROX:INTRON	RBM39	ENSG00000131051.24	ENST00000253363.11:ENST00000639702.1:ENST00000656873.1:ENST00000463004.5:ENST00000361162.10:ENST00000461283.5:ENST00000403542.6:ENST00000338163.10:ENST00000528062.7:ENST00000429968.5:ENST00000444878.5:ENST00000665058.1:ENST00000492779.5:ENST00000448303.5:ENST00000374038.7:ENST00000412738.5:ENST00000434927.5:ENST00000425184.5:ENST00000481037.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	81	2	1.40722	1.47644	1.54566	0.0733776	0.0207593	0.190105	0.122348
chr6	3005241	3005332	2787904	0	+	0.362637	(0.35,0.378]	chr6	263236	2	INTRON	INTRON	NQO2	ENSG00000124588.22	ENST00000426637.5:ENST00000380472.7:ENST00000380455.11:ENST00000397717.7:ENST00000338130.7:ENST00000380441.5:ENST00000380454.8:ENST00000380430.6:ENST00000606474.1	protein_coding	protein_coding	protein_coding	protein_coding	8	61	2	1.40722	1.4764249999999999	1.54563	0.0733776	0.046845	0.190105	0.167716
chr9	37166630	37166730	4118121	0	+	0.37	(0.35,0.378]	chr9	375384	65	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000322831.6:ENST00000461038.5:ENST00000488607.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	85	2	1.17085	1.476235	1.78162	0.0629069	0.0251606	0.196627	0.12011
chr3	152319927	152320027	1535498	0	+	0.26	[0,0.28]	chr3	159996	176	INTRON	INTRON	MBNL1	ENSG00000152601.18	ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000495875.6:ENST00000324210.10:ENST00000493459.5:ENST00000459747.1:ENST00000460591.5:ENST00000545754.5:ENST00000357472.7:ENST00000324196.9:ENST00000498502.5:ENST00000463374.5:ENST00000485910.5:ENST00000465907.6:ENST00000492948.5:ENST00000485509.5:ENST00000464596.5	protein_coding	protein_coding	protein_coding	protein_coding	10	100	2	1.34345	1.47622	1.60899	0.0563613	0.0503341	0.184423	0.156383
chr6	53318571	53318671	3107885	0	-	0.53	(0.515,0.57]	chr6	291049	225	INTRON	INTRON	ELOVL5	ENSG00000012660.14	ENST00000370918.8:ENST00000542638.5:ENST00000304434.11:ENST00000485336.5:ENST00000465983.5:ENST00000486973.1:ENST00000370913.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	75	2	1.3947	1.47617	1.55764	0.0429042	0.0183076	0.148082	0.11576
chr8	37898770	37898870	3935938	0	-	0.49	(0.476,0.515]	chr8	360577	3	SS5_PROX	SS5_PROX:INTRON	RAB11FIP1	ENSG00000156675.16	ENST00000330843.9:ENST00000287263.8:ENST00000522727.5	protein_coding	protein_coding	protein_coding	protein_coding	39	257	2	1.09552	1.47615	1.85678	0.0368192	0.00101901	0.138959	0.0293964
chr11	86044889	86044989	5014601	0	-	0.52	(0.515,0.57]	chr11	473022	129	INTRON	INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000630913.2:ENST00000528398.5:ENST00000356360.9:ENST00000534412.5:ENST00000531558.1:ENST00000531930.5:ENST00000532041.5:ENST00000525162.5:ENST00000528256.1:ENST00000528411.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	23	131	2	1.34531	1.47602	1.60673	0.0351974	0.00413829	0.137535	0.0588893
chr2	61536709	61536790	1131219	0	-	0.604938	(0.57,1]	chr2	121650	1	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	XPO1	ENSG00000082898.19	ENST00000676553.1:ENST00000677556.1:ENST00000677814.1:ENST00000676771.1:ENST00000677803.1:ENST00000677239.1:ENST00000678790.1:ENST00000677928.1:ENST00000678182.1:ENST00000677150.1:ENST00000678172.1:ENST00000678360.1:ENST00000678081.1:ENST00000676889.1:ENST00000676783.1:ENST00000679035.1:ENST00000677422.1:ENST00000677417.1:ENST00000677813.1:ENST00000676999.1:ENST00000401558.7:ENST00000428210.5:ENST00000677290.1:ENST00000677850.1:ENST00000451765.6:ENST00000676789.1:ENST00000678741.1:ENST00000404992.6:ENST00000406957.5:ENST00000443240.5:ENST00000481214.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	44	2	1.23894	1.47582	1.7127	0.0497875	0.0180739	0.17488	0.107124
chr9	130746454	130746554	4214189	0	+	0.4	(0.378,0.408]	chr9	386427	316	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000393293.4	protein_coding	protein_coding	protein_coding	protein_coding	12	87	2	1.38218	1.4757099999999999	1.56924	0.0444424	0.0267731	0.162728	0.123349
chr13	91350276	91350373	5516811	0	+	0.42268	(0.408,0.44]	chr13	527579	7	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	MIR17HG	ENSG00000215417.13	ENST00000400282.6:ENST00000582141.5:ENST00000581816.1:ENST00000659898.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	26	192	2	1.33832	1.475685	1.61305	0.0306577	0.00539008	0.143385	0.064373
chr7	121170136	121170235	3395470	0	+	0.393939	(0.378,0.408]	chr7	317781	201	INTRON	INTRON	CPED1	ENSG00000106034.18	ENST00000310396.10:ENST00000450913.6:ENST00000423795.5:ENST00000466055.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	15	95	2	1.13008	1.475635	1.82119	0.0517704	0.0214651	0.176696	0.114274
chr10	834033	834132	4541596	0	-	0.393939	(0.378,0.408]	chr10	419243	27	INTRON	INTRON	LARP4B	ENSG00000107929.16	ENST00000688365.1:ENST00000316157.8:ENST00000690516.1:ENST00000689323.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	85	2	1.24166	1.475595	1.70953	0.0623885	0.0190881	0.175402	0.119229
chr3	48529944	48530043	1688637	0	-	0.484848	(0.476,0.515]	chr3	172531	39	INTRON	INTRON	PFKFB4	ENSG00000114268.12	ENST00000232375.8:ENST00000490115.5:ENST00000383734.6:ENST00000416568.5:ENST00000417753.5:ENST00000445633.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	15	101	2	1.32101	1.47549	1.62997	0.0359377	0.018725	0.138959	0.117523
chr5	179701699	179701797	2560713	0	+	0.357143	(0.35,0.378]	chr5	244866	3	INTRON	INTRON	CANX	ENSG00000127022.16	ENST00000681674.1:ENST00000681712.1:ENST00000681903.1:ENST00000680406.1:ENST00000502296.6:ENST00000504734.5:ENST00000452673.6:ENST00000679719.1:ENST00000679523.1:ENST00000679395.1:ENST00000681504.1:ENST00000679642.1:ENST00000681894.1:ENST00000680504.1:ENST00000681265.1:ENST00000680894.1:ENST00000680812.1:ENST00000680614.1:ENST00000680985.1:ENST00000680837.1:ENST00000680827.1:ENST00000681576.1:ENST00000680984.1:ENST00000680042.1:ENST00000681762.1:ENST00000502498.6:ENST00000681476.1:ENST00000681072.1:ENST00000247461.9:ENST00000513246.6:ENST00000680618.1:ENST00000502673.6:ENST00000680092.1:ENST00000506654.6:ENST00000514032.5:ENST00000681733.1:ENST00000679471.1:ENST00000679527.1:ENST00000680006.1:ENST00000681398.1:ENST00000681431.1:ENST00000680013.1:ENST00000681076.1:ENST00000681168.1:ENST00000509563.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	89	2	1.16727	1.4753	1.78333	0.078488	0.0148511	0.198025	0.106937
chr1	31930334	31930434	414355	0	-	0.29	(0.28,0.32]	chr1	49924	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PTP4A2	ENSG00000184007.22	ENST00000647444.2:ENST00000649841.1:ENST00000468531.1:ENST00000534796.5:ENST00000532289.1:ENST00000526960.1:ENST00000524384.5:ENST00000528840.1:ENST00000494444.2:ENST00000529477.5:ENST00000533408.1:ENST00000475464.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	94	2	1.43837	1.47512	1.51187	0.0598267	0.0328251	0.169278	0.145164
chr5	139281145	139281244	2499248	0	+	0.464646	(0.44,0.476]	chr5	238886	3	INTRON	INTRON	MATR3:SNHG4	ENSG00000280987.4:ENSG00000281398.4	ENST00000509990.5:ENST00000506147.5:ENST00000512107.5:ENST00000361059.7:ENST00000506188.5:ENST00000394800.6:ENST00000502929.5:ENST00000504203.5:ENST00000514694.5:ENST00000507197.5:ENST00000509644.5:ENST00000505016.2:ENST00000505522.6:ENST00000502394.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	45	278	2	1.05806	1.475095	1.89213	0.0336406	0.00185014	0.134145	0.039946
chr19	50804166	50804266	7203187	0	-	0.57	(0.515,0.57]	chr19	730917	3	SS5_PROX	SS5_PROX:INTRON	C19orf48	ENSG00000167747.16	ENST00000641834.2:ENST00000596287.6:ENST00000597705.6:ENST00000693315.1:ENST00000597493.6:ENST00000692421.1:ENST00000593287.5:ENST00000601267.5:ENST00000602125.1	transcribed_unitary_pseudogene	retained_intron	transcribed_unitary_pseudogene	retained_intron:processed_transcript	26	151	2	1.31012	1.4748000000000001	1.63948	0.020555	0.00524525	0.122348	0.0633615
chr21	46197265	46197364	7470547	0	-	0.262626	[0,0.28]	chr21	761464	6	INTRON	INTRON	LSS	ENSG00000160285.15	ENST00000356396.8:ENST00000397728.8:ENST00000457828.6:ENST00000522411.5	protein_coding	protein_coding	protein_coding	protein_coding	15	142	2	1.45363	1.4744899999999999	1.49535	0.0670881	0.020121	0.183051	0.121243
chr1	29093169	29093268	60772	0	+	0.424242	(0.408,0.44]	chr1	7763	87	INTRON	INTRON	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000373798.5:ENST00000649674.1:ENST00000343067.9:ENST00000349460.9:ENST00000646871.1:ENST00000488277.1:ENST00000490308.2:ENST00000650132.1:ENST00000649992.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	73	2	1.28785	1.474445	1.66104	0.0494367	0.0349715	0.174213	0.13747500000000001
chr1	50928778	50928878	451941	0	-	0.5	(0.476,0.515]	chr1	54267	704	INTRON	INTRON	FAF1	ENSG00000185104.21	ENST00000396153.7:ENST00000487898.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	75	2	1.37743	1.47423	1.57103	0.0477443	0.0307896	0.153019	0.143385
chr6	2889363	2889463	3047330	0	-	0.46	(0.44,0.476]	chr6	283507	22	UTR3	UTR3:EXON_MRNA	SERPINB9	ENSG00000170542.6	ENST00000380698.5	protein_coding	protein_coding	protein_coding	protein_coding	28	180	2	1.13107	1.4739499999999999	1.81683	0.0324851	0.00432508	0.145164	0.0579331
chr21	46223335	46223433	7470825	0	-	0.642857	(0.57,1]	chr21	761544	2	INTRON	INTRON	LSS	ENSG00000160285.15	ENST00000356396.8:ENST00000397728.8:ENST00000457828.6:ENST00000522411.5:ENST00000464357.1:ENST00000450351.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	28	2	1.2666	1.47323	1.67986	0.0788045	0.0496395	0.198736	0.174685
chr3	195686193	195686291	1593726	0	+	0.214286	[0,0.28]	chr3	165079	29	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MUC20-OT1	ENSG00000242086.8	ENST00000429897.5:ENST00000600527.5:ENST00000626089.2:ENST00000451982.6:ENST00000601648.5:ENST00000414625.6:ENST00000628917.2:ENST00000625358.2:ENST00000602127.5:ENST00000625882.2:ENST00000625632.2:ENST00000626706.1:ENST00000627767.1:ENST00000627502.2:ENST00000597034.5:ENST00000629823.2:ENST00000630243.2:ENST00000608699.3:ENST00000627718.2:ENST00000631366.2:ENST00000630170.2:ENST00000626156.1	lncRNA	lncRNA	lncRNA	lncRNA	27	267	2	1.36275	1.473005	1.58326	0.0366717	0.0079383	0.138959	0.0797304
chr2	230726252	230726352	1030293	0	+	0.44	(0.408,0.44]	chr2	110002	118	INTRON	INTRON	CAB39	ENSG00000135932.12	ENST00000258418.10:ENST00000409788.7:ENST00000410084.7	protein_coding	protein_coding	protein_coding	protein_coding	10	69	2	1.31757	1.4729999999999999	1.62843	0.0705974	0.025242	0.184528	0.133676
chr19	5205993	5206091	7122360	0	-	0.306122	(0.28,0.32]	chr19	716713	6	UTR3	UTR3:EXON_MRNA:INTRON	PTPRS	ENSG00000105426.18	ENST00000588552.5:ENST00000262963.11	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	19	164	2	1.17046	1.4726050000000002	1.77475	0.0583956	0.00755719	0.167723	0.0773151
chr2	28916298	28916397	725399	0	+	0.323232	(0.32,0.35]	chr2	83812	17	INTRON	INTRON	WDR43	ENSG00000163811.12	ENST00000407426.8:ENST00000296126.6	protein_coding	protein_coding	protein_coding	protein_coding	10	81	2	1.40373	1.47254	1.54135	0.0593351	0.0353776	0.168767	0.150752
chr3	37258863	37258963	1395910	0	+	0.29	(0.28,0.32]	chr3	146319	70	INTRON	INTRON	GOLGA4	ENSG00000144674.17	ENST00000435830.6:ENST00000444882.5:ENST00000356847.8:ENST00000450863.6:ENST00000361924.7:ENST00000429018.5:ENST00000431105.1:ENST00000419177.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	24	201	2	1.40097	1.472375	1.54378	0.0438137	0.0072494	0.149021	0.0756492
chr22	38491855	38491955	7587937	0	-	0.4	(0.378,0.408]	chr22	776723	25	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	DDX17	ENSG00000100201.23	ENST00000403230.3:ENST00000396821.8:ENST00000216019.11:ENST00000475004.6:ENST00000432525.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	46	317	2	1.1699600000000001	1.4723600000000001	1.77476	0.026608	0.00129732	0.123168	0.0333764
chr8	102403480	102403580	4012664	0	-	0.39	(0.378,0.408]	chr8	367237	415	INTRON	INTRON	UBR5	ENSG00000104517.13	ENST00000520539.6:ENST00000220959.8:ENST00000521922.5	protein_coding	protein_coding	protein_coding	protein_coding	12	84	2	1.39434	1.4723549999999999	1.55037	0.0365151	0.0349817	0.149337	0.138959
chr3	154312647	154312747	1843418	0	-	0.5	(0.476,0.515]	chr3	185461	5	INTRON	INTRON	DHX36	ENSG00000174953.14	ENST00000496811.6:ENST00000308361.10:ENST00000329463.9:ENST00000481941.5	protein_coding	protein_coding	protein_coding	protein_coding	8	55	2	1.32871	1.472285	1.61586	0.0678032	0.0567093	0.185107	0.184298
chr16	21862887	21862986	6461870	0	-	0.515152	(0.476,0.515]	chr16	623459	48	INTRON	INTRON	NPIPB4	ENSG00000185864.18	ENST00000539318.5:ENST00000536041.5:ENST00000543449.1:ENST00000541674.5:ENST00000544693.5:ENST00000538859.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	16	109	2	1.13713	1.4722149999999998	1.8073	0.0611432	0.00812117	0.193423	0.0766625
chr6	147762146	147762245	2991620	0	+	0.30303	(0.28,0.32]	chr6	280177	247	INTRON	INTRON	ENSG00000227681	ENSG00000227681.5	ENST00000427015.1	lncRNA	lncRNA	lncRNA	lncRNA	8	72	2	1.33399	1.47215	1.61031	0.0743182	0.0600513	0.191786	0.190658
chr12	64408971	64409069	5152925	0	+	0.295918	(0.28,0.32]	chr12	487721	33	INTRON	INTRON	XPOT	ENSG00000184575.12	ENST00000332707.10:ENST00000540203.5	protein_coding	protein_coding	protein_coding	protein_coding	12	101	2	1.43233	1.4721000000000002	1.51187	0.0598267	0.028373	0.169278	0.138205
chr11	57672603	57672700	4792315	0	+	0.371134	(0.35,0.378]	chr11	443586	7	UTR5	UTR5:EXON_MRNA:INTRON	ZDHHC5	ENSG00000156599.11	ENST00000527985.5:ENST00000528177.5:ENST00000287169.8	protein_coding	protein_coding	protein_coding	protein_coding	14	106	2	1.38936	1.47183	1.5543	0.0361852	0.0236849	0.152746	0.118716
chr14	101828609	101828709	5819177	0	+	0.27	[0,0.28]	chr14	551860	33	INTRON	INTRON	PPP2R5C	ENSG00000078304.20	ENST00000694906.1:ENST00000422945.6:ENST00000554442.5:ENST00000328724.9:ENST00000553890.1:ENST00000350249.7:ENST00000557621.5:ENST00000556946.1:ENST00000556307.5:ENST00000553730.5:ENST00000557714.1:ENST00000334743.9:ENST00000445439.7:ENST00000557095.5:ENST00000556493.1:ENST00000553842.1:ENST00000556373.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	111	2	1.40589	1.4714450000000001	1.537	0.0666282	0.0312625	0.182954	0.14427
chr1	204550575	204550674	297774	0	+	0.565657	(0.515,0.57]	chr1	34331	10	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	MDM4	ENSG00000198625.14	ENST00000367183.7:ENST00000391947.6:ENST00000454264.6:ENST00000612738.4:ENST00000614459.4:ENST00000616250.4:ENST00000367182.8:ENST00000463049.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	38	196	2	0.834695	1.4713625	2.10803	0.0764673	4.4926e-4	0.196035	0.0192381
chr3	42217101	42217201	1405719	0	+	0.44	(0.408,0.44]	chr3	147607	46	INTRON	INTRON	TRAK1	ENSG00000182606.17	ENST00000487159.5:ENST00000672026.1:ENST00000673621.2:ENST00000327628.10:ENST00000396175.5	protein_coding	protein_coding	protein_coding	protein_coding	8	54	2	1.35436	1.470995	1.58763	0.0639217	0.0603719	0.19151	0.177824
chr1	11023327	11023426	24675	0	+	0.464646	(0.44,0.476]	chr1	2610	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TARDBP	ENSG00000120948.19	ENST00000639083.1:ENST00000639599.1:ENST00000240185.8:ENST00000614757.4:ENST00000473869.5:ENST00000315091.7:ENST00000616545.4:ENST00000621790.4:ENST00000617172.4:ENST00000611963.4:ENST00000619555.4:ENST00000620632.4:ENST00000610369.4:ENST00000614494.1:ENST00000611136.4:ENST00000477447.6:ENST00000612542.1:ENST00000620505.1:ENST00000621573.1:ENST00000611008.4:ENST00000613177.1:ENST00000622108.1:ENST00000496840.1:ENST00000617757.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	16	107	2	1.44832	1.470885	1.49345	0.0271885	0.020207	0.123904	0.121299
chr1	108930501	108930600	518822	0	-	0.515152	(0.476,0.515]	chr1	60853	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	CLCC1	ENSG00000121940.17	ENST00000690509.1:ENST00000687328.1:ENST00000685014.1:ENST00000685540.1:ENST00000686576.1:ENST00000688070.1:ENST00000691513.1:ENST00000686821.1:ENST00000692511.1:ENST00000689479.1:ENST00000687646.1:ENST00000687998.1:ENST00000687226.1:ENST00000693336.1:ENST00000689991.1:ENST00000687591.1:ENST00000691777.1:ENST00000690756.1:ENST00000688778.1:ENST00000685104.1:ENST00000689103.1:ENST00000687734.1:ENST00000686434.1:ENST00000685497.1:ENST00000691342.1:ENST00000686776.1:ENST00000692342.1:ENST00000689351.1:ENST00000692584.1:ENST00000692775.1:ENST00000687134.1:ENST00000690707.1:ENST00000687675.1:ENST00000688298.1:ENST00000675018.1:ENST00000690781.1:ENST00000691556.1:ENST00000689189.1:ENST00000687099.1:ENST00000685791.1:ENST00000687865.1:ENST00000687449.1:ENST00000688285.1:ENST00000686817.1:ENST00000369968.7:ENST00000674992.1:ENST00000675001.1:ENST00000369969.7:ENST00000356970.6:ENST00000692184.1:ENST00000482889.2:ENST00000473062.2:ENST00000369976.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	15	99	2	1.1172	1.4705949999999999	1.82399	0.0691127	0.00866166	0.184298	0.0842392
chr16	22493121	22493220	6322536	0	+	0.353535	(0.35,0.378]	chr16	605439	9	INTRON	INTRON	NPIPB5	ENSG00000243716.11	ENST00000415654.5:ENST00000415833.6:ENST00000546168.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	26	191	2	1.30107	1.4705949999999999	1.64012	0.0290354	0.00541201	0.127805	0.066545000000000007
chr17	20870478	20870577	6576083	0	+	0.565657	(0.515,0.57]	chr17	639372	14	INTRON	INTRON	CCDC144NL-AS1	ENSG00000233098.10	ENST00000577537.5:ENST00000692759.1:ENST00000443508.8:ENST00000692309.1:ENST00000439794.6:ENST00000417232.6:ENST00000583962.2:ENST00000582324.5:ENST00000577860.5	lncRNA	lncRNA	lncRNA	lncRNA	13	75	2	1.36683	1.47044	1.57405	0.0386314	0.0221119	0.142701	0.123903
chr6	111275010	111275110	2939936	0	+	0.48	(0.476,0.515]	chr6	276923	80	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	MFSD4B	ENSG00000173214.7	ENST00000671876.2:ENST00000672750.1:ENST00000672191.1:ENST00000671883.1:ENST00000673446.1:ENST00000444259.2:ENST00000653951.2:ENST00000673245.1:ENST00000673164.1:ENST00000658925.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	10	68	2	1.36967	1.4703499999999998	1.57103	0.0605132	0.0307896	0.171085	0.143385
chr22	38387133	38387231	7587728	0	-	0.397959	(0.378,0.408]	chr22	776697	32	INTRON	INTRON	TPTEP2	ENSG00000244627.5	ENST00000428294.5:ENST00000407491.6:ENST00000443042.5:ENST00000457665.5:ENST00000381645.7:ENST00000443658.5:ENST00000455209.5:ENST00000454577.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	9	65	2	1.37524	1.47027	1.5653	0.0610755	0.043739	0.172411	0.162255
chr1	70227822	70227921	142656	0	+	0.363636	(0.35,0.378]	chr1	15978	47	INTRON	INTRON	SRSF11	ENSG00000116754.14	ENST00000370951.5:ENST00000463877.1:ENST00000687381.1:ENST00000370950.7:ENST00000475204.5:ENST00000370949.2:ENST00000395136.7:ENST00000473950.5:ENST00000469170.5:ENST00000486667.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	28	208	2	1.15128	1.47019	1.7891	0.034754	0.00437855	0.148431	0.0584961
chrX	151957682	151957781	7908456	0	-	0.383838	(0.378,0.408]	chrX	804778	3	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	GABRE	ENSG00000102287.19	ENST00000370328.4:ENST00000486255.1:ENST00000441219.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	63	422	2	1.11046	1.47014	1.82982	0.0203277	0.00139411	0.121585	0.0340865
chr16	22284786	22284885	6321482	0	+	0.474747	(0.44,0.476]	chr16	605178	9	UTR3	UTR3:EXON_MRNA	EEF2K	ENSG00000103319.12	ENST00000263026.10	protein_coding	protein_coding	protein_coding	protein_coding	19	126	2	1.36831	1.470055	1.5718	0.0212538	0.0170387	0.123318	0.104099
chrX	119621746	119621845	7873189	0	-	0.424242	(0.408,0.44]	chrX	801798	13	INTRON	INTRON	SEPTIN6	ENSG00000125354.24	ENST00000360156.11:ENST00000354228.8:ENST00000460411.5:ENST00000489216.5:ENST00000354416.7:ENST00000394610.7:ENST00000343984.5:ENST00000467310.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	12	81	2	1.39837	1.4699399999999998	1.54151	0.0368312	0.0342165	0.146942	0.138959
chrX	149971215	149971315	7730603	0	+	0.52	(0.515,0.57]	chrX	791141	81	INTRON	INTRON	EOLA2-DT	ENSG00000235703.7	ENST00000670799.1:ENST00000654890.1:ENST00000449111.5:ENST00000444489.5:ENST00000669126.1:ENST00000452864.2:ENST00000671125.1	lncRNA	lncRNA	lncRNA	lncRNA	7	41	2	1.44089	1.4698	1.49871	0.0770828	0.0617046	0.196285	0.193423
chr17	42473938	42474038	6611442	0	+	0.4	(0.378,0.408]	chr17	644092	26	INTRON	INTRON	ATP6V0A1	ENSG00000033627.17	ENST00000393829.6:ENST00000343619.9:ENST00000537728.5:ENST00000588901.5:ENST00000264649.10:ENST00000585525.5:ENST00000544137.5:ENST00000589727.5:ENST00000592324.1:ENST00000587375.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	64	2	1.45934	1.4696950000000002	1.48005	0.0596711	0.0442931	0.168954	0.162302
chr6	143187471	143187549	2976457	0	+	0.371795	(0.35,0.378]	chr6	279158	2	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	AIG1	ENSG00000146416.19	ENST00000367601.8:ENST00000447498.5:ENST00000646199.1:ENST00000357847.9:ENST00000629020.2:ENST00000275235.8:ENST00000494282.6:ENST00000458219.1:ENST00000470265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	13	95	2	1.12173	1.469625	1.81752	0.0792732	0.0130467	0.199711	0.0994973
chr16	28829100	28829200	6334393	0	+	0.5	(0.476,0.515]	chr16	606525	3	SS3_PROX	SS3_PROX:INTRON	ATXN2L	ENSG00000168488.19	ENST00000336783.9:ENST00000563314.5:ENST00000340394.12:ENST00000382686.8:ENST00000395547.6:ENST00000325215.10:ENST00000564304.5:ENST00000570200.5:ENST00000568266.5:ENST00000565971.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	77	2	1.14644	1.469155	1.79187	0.0534773	0.0362169	0.180041	0.138959
chr17	22109294	22109393	6578756	0	+	0.282828	(0.28,0.32]	chr17	639556	180	INTRON	INTRON	UBBP4	ENSG00000263563.7	ENST00000648259.1:ENST00000688301.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	25	216	2	1.29746	1.46913	1.6408	0.0365808	0.0065093700000000004	0.138959	0.0735232
chr3	13418859	13418959	1618587	0	-	0.5	(0.476,0.515]	chr3	167237	186	INTRON	INTRON	NUP210	ENSG00000132182.13	ENST00000254508.7:ENST00000420141.3:ENST00000695492.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	14	97	2	1.40573	1.46903	1.53233	0.0410362	0.0194937	0.161534	0.109483
chr8	90339747	90339847	3793491	0	+	0.3	(0.28,0.32]	chr8	351786	926	INTRON	INTRON	LINC00534	ENSG00000253394.7	ENST00000662145.1:ENST00000655523.1:ENST00000517400.6:ENST00000658299.1:ENST00000663329.1:ENST00000658342.1:ENST00000523283.6:ENST00000655219.1:ENST00000662692.1:ENST00000667296.1:ENST00000667565.1:ENST00000523406.2:ENST00000659030.1:ENST00000653734.1:ENST00000654785.1:ENST00000524361.5:ENST00000668745.1:ENST00000666641.2:ENST00000661519.1:ENST00000671657.1:ENST00000655123.1:ENST00000663098.1:ENST00000670903.1:ENST00000654946.1	lncRNA	lncRNA	lncRNA	lncRNA	10	89	2	1.45717	1.46883	1.48049	0.0503127	0.0472947	0.16913	0.156383
chr15	28669907	28670002	5988750	0	+	0.410526	(0.408,0.44]	chr15	569388	12	INTRON	INTRON	HERC2P9	ENSG00000206149.11	ENST00000529624.5:ENST00000530420.5:ENST00000528584.5	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript:transcribed_unprocessed_pseudogene	16	108	2	1.35901	1.4687700000000001	1.57853	0.0428833	0.0118585	0.148082	0.0962115
chr7	127816660	127816760	3404057	0	+	0.47	(0.44,0.476]	chr7	318140	87	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000468166.5:ENST00000465900.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	14	92	2	1.11633	1.4686949999999999	1.82106	0.0697904	0.0124107	0.184298	0.0973643
chr5	131689145	131689244	2719655	0	-	0.272727	[0,0.28]	chr5	255672	96	INTRON	INTRON	FNIP1	ENSG00000217128.13	ENST00000510461.6:ENST00000307954.12:ENST00000307968.11:ENST00000511848.1	protein_coding	protein_coding	protein_coding	protein_coding	11	111	2	1.45721	1.468675	1.48014	0.054993	0.0401939	0.165463	0.161534
chr3	177021129	177021228	1870638	0	-	0.333333	(0.32,0.35]	chr3	187269	19	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TBL1XR1	ENSG00000177565.18	ENST00000636864.1:ENST00000457928.7:ENST00000430069.5:ENST00000637659.1:ENST00000474363.1:ENST00000673974.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	20	156	2	1.23216	1.468605	1.70505	0.0350335	0.0122272	0.149547	0.0910127
chr2	241321079	241321177	1053660	0	+	0.27551	[0,0.28]	chr2	112202	4	INTRON	INTRON	SEPTIN2	ENSG00000168385.18	ENST00000391973.6:ENST00000428282.5:ENST00000492978.5:ENST00000360051.7:ENST00000407017.5:ENST00000445030.5:ENST00000428524.5:ENST00000469434.5:ENST00000616972.4:ENST00000495463.5:ENST00000482304.5:ENST00000475474.5:ENST00000401990.5:ENST00000469175.5:ENST00000407971.5:ENST00000461048.5:ENST00000457335.5:ENST00000436795.5:ENST00000494824.5:ENST00000411484.5:ENST00000462147.5:ENST00000434955.5:ENST00000466211.5:ENST00000391971.7:ENST00000402092.6:ENST00000484740.1:ENST00000473479.5:ENST00000464128.5:ENST00000441533.5:ENST00000467971.5:ENST00000425899.5:ENST00000443492.5:ENST00000437066.5:ENST00000429791.5:ENST00000420786.5:ENST00000475823.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	91	2	1.46548	1.468585	1.47169	0.0721311	0.0479607	0.187433	0.171039
chr6	16132138	16132237	2825803	0	+	0.30303	(0.28,0.32]	chr6	265309	10	INTRON	INTRON	MYLIP	ENSG00000007944.15	ENST00000356840.8:ENST00000349606.4	protein_coding	protein_coding	protein_coding	protein_coding	9	79	2	1.4428	1.468375	1.49395	0.0712927	0.0423482	0.185716	0.161744
chr17	46114274	46114373	6784077	0	-	0.545455	(0.515,0.57]	chr17	669208	192	INTRON	INTRON	KANSL1	ENSG00000120071.15	ENST00000574590.6:ENST00000572904.6:ENST00000432791.7:ENST00000575318.6:ENST00000638275.1:ENST00000262419.10:ENST00000648792.1:ENST00000639531.1:ENST00000639150.1:ENST00000639853.1:ENST00000571698.2:ENST00000639375.1:ENST00000577114.2:ENST00000638269.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	10	57	2	1.25909	1.4683350000000002	1.67758	0.0547269	0.0471728	0.168737	0.165463
chr20	35741361	35741461	7336555	0	-	0.39	(0.378,0.408]	chr20	747513	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RBM39	ENSG00000131051.24	ENST00000253363.11:ENST00000639702.1:ENST00000656873.1:ENST00000463004.5:ENST00000361162.10:ENST00000403542.6:ENST00000338163.10:ENST00000528062.7:ENST00000429968.5:ENST00000444878.5:ENST00000665058.1:ENST00000374038.7:ENST00000412738.5:ENST00000434927.5:ENST00000455343.5:ENST00000416108.5:ENST00000442447.5:ENST00000433027.5:ENST00000453310.5:ENST00000416529.5:ENST00000397370.3:ENST00000463098.5:ENST00000461849.1:ENST00000493853.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	15	110	2	1.3234	1.46829	1.61318	0.0443586	0.0152775	0.162443	0.0999282
chr3	196060336	196060425	1897318	0	-	0.382022	(0.378,0.408]	chr3	189917	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	TFRC	ENSG00000072274.13	ENST00000420415.5:ENST00000360110.9:ENST00000392396.7:ENST00000475593.5:ENST00000483983.5:ENST00000465288.5:ENST00000477148.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	26	168	2	1.2075	1.46828	1.72906	0.024218	0.00969667	0.130562	0.0829274
chr14	23325483	23325582	5657000	0	+	0.626263	(0.57,1]	chr14	539475	3	UTR3	UTR3:EXON_MRNA	BCL2L2-PABPN1:PABPN1	ENSG00000258643.6:ENSG00000100836.11	ENST00000678502.1:ENST00000216727.9:ENST00000397276.6	protein_coding	protein_coding	protein_coding	protein_coding	38	126	2	1.2912	1.46816	1.64512	0.00980715	0.00272076	0.0837062	0.0481508
chr9	128269272	128269365	4358161	0	-	0.462366	(0.44,0.476]	chr9	400428	9	EXON_MRNA	EXON_MRNA:INTRON	GOLGA2	ENSG00000167110.19	ENST00000421699.8:ENST00000611957.5:ENST00000693185.1:ENST00000686291.1:ENST00000685377.1:ENST00000687179.1:ENST00000458730.3:ENST00000693047.1:ENST00000686884.1:ENST00000693180.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	88	2	1.28061	1.468145	1.65568	0.0639824	0.0130261	0.177882	0.099362
chr2	96632420	96632515	1181138	0	-	0.421053	(0.408,0.44]	chr2	126519	5	INTRON	INTRON	KANSL3	ENSG00000114982.19	ENST00000354204.10:ENST00000431828.6:ENST00000487070.5:ENST00000420155.5:ENST00000670907.1:ENST00000666923.1:ENST00000597150.5:ENST00000444759.5:ENST00000452268.5:ENST00000425656.5:ENST00000448075.1:ENST00000451819.5:ENST00000416138.1:ENST00000418735.1:ENST00000475820.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	14	96	2	1.46762	1.46806	1.4685	0.029918	0.0267854	0.134871	0.129138
chr7	155669306	155669404	3452142	0	+	0.367347	(0.35,0.378]	chr7	322648	37	INTRON	INTRON	RBM33	ENSG00000184863.11	ENST00000287912.7:ENST00000401878.8:ENST00000392759.7	protein_coding	protein_coding	protein_coding	protein_coding	15	107	2	1.45912	1.467955	1.47679	0.0466814	0.0174738	0.151623	0.11288
chr1	167978609	167978709	248912	0	+	0.46	(0.44,0.476]	chr1	29564	32	INTRON	INTRON	DCAF6	ENSG00000143164.16	ENST00000450548.5:ENST00000470919.5:ENST00000432587.6:ENST00000367843.7:ENST00000470721.5:ENST00000367840.4:ENST00000312263.10:ENST00000455334.5:ENST00000491067.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	48	2	1.43625	1.467835	1.49942	0.0792118	0.063142	0.199574	0.197183
chr4	78802879	78802979	1981650	0	+	0.55	(0.515,0.57]	chr4	198463	258	INTRON	INTRON	BMP2K	ENSG00000138756.19	ENST00000389010.7:ENST00000502613.3:ENST00000502871.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	57	2	1.39706	1.467755	1.53845	0.0475376	0.041152	0.161534	0.153019
chr3	129314966	129315064	1815333	0	-	0.673469	(0.57,1]	chr3	182488	3	UTR3	UTR3:EXON_MRNA	H1-10	ENSG00000184897.6	ENST00000333762.6	protein_coding	protein_coding	protein_coding	protein_coding	30	98	2	1.22795	1.4676	1.70725	0.0159967	0.00454565	0.101453	0.0619468
chr22	19415856	19415955	7554266	0	-	0.313131	(0.28,0.32]	chr22	772317	47	INTRON	INTRON	HIRA:C22orf39	ENSG00000100084.14:ENSG00000242259.9	ENST00000263208.5:ENST00000340170.8:ENST00000509549.5:ENST00000464189.5:ENST00000452818.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	14	123	2	1.1967	1.467565	1.73843	0.061138	0.0179591	0.193423	0.1067
chr2	175928469	175928569	1272452	0	-	0.26	[0,0.28]	chr2	134508	47	UTR3	UTR3:EXON_MRNA	LNPK	ENSG00000144320.14	ENST00000272748.9:ENST00000544803.5	protein_coding	protein_coding	protein_coding	protein_coding	16	156	2	1.444	1.46699	1.48998	0.0441863	0.0231577	0.149888	0.127017
chr16	1863897	1863995	6430273	0	-	0.540816	(0.515,0.57]	chr16	618392	14	INTRON	INTRON	MEIOB	ENSG00000162039.17	ENST00000325962.9:ENST00000470044.5:ENST00000397344.7:ENST00000496541.6:ENST00000460494.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	13	70	2	1.24649	1.4666800000000002	1.68687	0.041089	0.0300837	0.161534	0.129186
chr4	73164739	73164838	2159884	0	-	0.383838	(0.378,0.408]	chr4	212782	30	INTRON	INTRON	ANKRD17	ENSG00000132466.20	ENST00000358602.9:ENST00000558247.5:ENST00000330838.10:ENST00000509867.6:ENST00000561029.1:ENST00000559367.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	14	98	2	1.30976	1.46635	1.62294	0.0395315	0.0222846	0.161534	0.116433
chr10	69145327	69145427	4444762	0	+	0.35	(0.32,0.35]	chr10	410023	119	INTRON	INTRON	VPS26A	ENSG00000122958.15	ENST00000373382.5:ENST00000395098.5:ENST00000489656.5:ENST00000263559.11:ENST00000497564.5:ENST00000490696.5:ENST00000467852.1:ENST00000489794.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	69	2	1.32932	1.466145	1.60297	0.0647328	0.0540385	0.181713	0.179192
chr7	139422898	139422991	3438235	0	+	0.311828	(0.28,0.32]	chr7	320387	7	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	LUC7L2	ENSG00000146963.18	ENST00000619796.4:ENST00000354926.9:ENST00000456182.5:ENST00000263545.7:ENST00000498518.1:ENST00000482860.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	22	187	2	1.43079	1.46596	1.50113	0.024325	0.0159983	0.12011	0.109464
chr7	156768283	156768383	3686758	0	-	0.47	(0.44,0.476]	chr7	342051	41	INTRON	INTRON	LMBR1	ENSG00000105983.23	ENST00000353442.10:ENST00000448926.5:ENST00000415428.5:ENST00000454132.5:ENST00000434503.5:ENST00000430278.5:ENST00000434278.5:ENST00000444719.5:ENST00000461469.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	63	2	1.43625	1.46578	1.49531	0.063142	0.0421587	0.197183	0.148082
chr6	18263442	18263542	3069240	0	-	0.33	(0.32,0.35]	chr6	285215	2	SS5_PROX	SS5_PROX:INTRON	DEK	ENSG00000124795.17	ENST00000652689.1:ENST00000651624.1:ENST00000515770.2:ENST00000651992.1:ENST00000507591.2:ENST00000505224.5:ENST00000244776.11:ENST00000652576.1:ENST00000503715.5:ENST00000515742.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	17	129	2	1.29206	1.465625	1.63919	0.0308236	0.0231117	0.143385	0.118148
chr4	39762890	39762989	1953642	0	+	0.424242	(0.408,0.44]	chr4	195650	17	INTRON	INTRON	UBE2K	ENSG00000078140.14	ENST00000510934.5:ENST00000261427.10:ENST00000438068.6:ENST00000513231.5:ENST00000503368.5:ENST00000445950.2:ENST00000510719.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	18	123	2	1.20932	1.465285	1.72125	0.0674635	0.00441919	0.183556	0.061054
chr8	129350892	129350990	4058769	0	-	0.346939	(0.32,0.35]	chr8	369545	58	INTRON	INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000657400.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1	lncRNA	lncRNA	lncRNA	lncRNA	11	89	2	1.38881	1.46508	1.54135	0.0506111	0.0353776	0.156383	0.150752
chr6	26132492	26132591	2837077	0	+	0.414141	(0.408,0.44]	chr6	266010	74	INTRON	INTRON	H2AC6	ENSG00000180573.10	ENST00000314088.6:ENST00000602637.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	35	233	2	1.32011	1.46471	1.60931	0.0217568	0.00310714	0.11491	0.0512424
chr8	9004496	9004596	3695573	0	+	0.52	(0.515,0.57]	chr8	342899	2	SS5_PROX	SS5_PROX:INTRON	ERI1	ENSG00000104626.15	ENST00000519292.5:ENST00000521844.1:ENST00000250263.8:ENST00000520684.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	17	95	2	1.43349	1.4646599999999999	1.49583	0.0378274	0.0115622	0.141117	0.0962115
chr22	39520567	39520664	7516072	0	+	0.608247	(0.57,1]	chr22	768007	5	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	ATF4	ENSG00000128272.18	ENST00000404241.6:ENST00000674920.3:ENST00000679776.1:ENST00000337304.2:ENST00000675582.2:ENST00000396680.3:ENST00000676346.2:ENST00000680446.1:ENST00000674568.2:ENST00000680748.1:ENST00000674835.2	protein_coding	protein_coding	protein_coding	protein_coding	31	92	2	0.933869	1.4644295	1.99499	0.0508772	0.00160859	0.176209	0.0365374
chr7	73509651	73509748	3554973	0	-	0.463918	(0.44,0.476]	chr7	330807	8	INTRON	INTRON	BAZ1B	ENSG00000009954.11	ENST00000339594.9:ENST00000404251.1	protein_coding	protein_coding	protein_coding	protein_coding	11	72	2	1.32393	1.4643000000000002	1.60467	0.0439888	0.0411383	0.162255	0.1451
chr4	126618790	126618890	2236897	0	-	0.36	(0.35,0.378]	chr4	219023	1533	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	13	86	2	1.26869	1.464295	1.6599	0.0545616	0.0359577	0.165292	0.152355
chr10	73062064	73062164	4647493	0	-	0.32	(0.28,0.32]	chr10	427530	81	INTRON	INTRON	P4HA1	ENSG00000122884.13	ENST00000394890.7:ENST00000307116.6:ENST00000373008.6:ENST00000440381.5:ENST00000263556.3	protein_coding	protein_coding	protein_coding	protein_coding	15	130	2	1.33565	1.46393	1.59221	0.053078	0.0157727	0.162321	0.109464
chr11	585664	585763	4719665	0	+	0.464646	(0.44,0.476]	chr11	436170	32	INTRON	INTRON	PHRF1	ENSG00000070047.13	ENST00000264555.10:ENST00000416188.3:ENST00000534320.5:ENST00000413872.6:ENST00000533464.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	18	120	2	1.23729	1.4638900000000001	1.69049	0.0431973	0.00892921	0.148082	0.0849778
chr10	50400582	50400682	4618451	0	-	0.38	(0.378,0.408]	chr10	425422	559	INTRON	INTRON	SGMS1	ENSG00000198964.14	ENST00000429490.5:ENST00000361781.7:ENST00000619438.4:ENST00000492601.2:ENST00000609445.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	15	104	2	1.3638	1.46366	1.56352	0.0513185	0.0128449	0.158207	0.0990564
chr13	20075630	20075729	5453629	0	+	0.282828	(0.28,0.32]	chr13	522569	74	INTRON	INTRON	ZMYM2	ENSG00000121741.17	ENST00000382874.6:ENST00000610343.5:ENST00000382871.3:ENST00000382883.7:ENST00000382870.7:ENST00000494061.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	86	2	1.38178	1.463495	1.54521	0.0548272	0.047484	0.169527	0.165463
chr3	15834893	15834993	1624196	0	-	0.45	(0.44,0.476]	chr3	168034	202	INTRON	INTRON	ANKRD28	ENSG00000206560.12	ENST00000399451.6:ENST00000412318.5:ENST00000439830.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	81	2	1.30125	1.46349	1.62573	0.0734119	0.0146931	0.190171	0.106558
chr1	65275711	65275810	135750	0	+	0.333333	(0.32,0.35]	chr1	15346	104	INTRON	INTRON	DNAJC6	ENSG00000116675.16	ENST00000463018.5:ENST00000494710.6:ENST00000263441.11:ENST00000395325.7:ENST00000483402.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	22	174	2	1.39934	1.463395	1.52745	0.0256566	0.0122025	0.120491	0.0967881
chr18	737361	737461	6939944	0	-	0.49	(0.476,0.515]	chr18	686466	4	SS3_PROX	SS3_PROX:INTRON	YES1	ENSG00000176105.14	ENST00000584307.5:ENST00000314574.5:ENST00000577961.5	protein_coding	protein_coding	protein_coding	protein_coding	13	87	2	1.26204	1.463105	1.66417	0.0570171	0.0164481	0.167723	0.110077
chr14	23310494	23310589	5656837	0	+	0.515789	(0.515,0.57]	chr14	539438	17	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	BCL2L2:BCL2L2-PABPN1	ENSG00000129473.11:ENSG00000258643.6	ENST00000679219.1:ENST00000678311.1:ENST00000678502.1:ENST00000250405.10:ENST00000557579.2:ENST00000553781.5:ENST00000679000.1:ENST00000556100.3:ENST00000557008.2:ENST00000556599.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	15	81	2	1.16924	1.463095	1.75695	0.047801	0.016156	0.170494	0.101453
chr19	28528007	28528107	7166375	0	-	0.27	[0,0.28]	chr19	724189	598	INTRON	INTRON	ENSG00000283403:ENSG00000267243	ENSG00000283403.1:ENSG00000267243.6	ENST00000592347.5:ENST00000593065.5	lncRNA	lncRNA	lncRNA	lncRNA	10	99	2	1.37274	1.463015	1.55329	0.058079	0.0517795	0.176696	0.167723
chr8	129456678	129456778	4059840	0	-	0.47	(0.44,0.476]	chr8	369598	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1:ENST00000676273.1:ENST00000667643.1:ENST00000668791.1:ENST00000663716.1:ENST00000663572.1:ENST00000676148.1:ENST00000667962.1:ENST00000674877.1:ENST00000675316.1:ENST00000674656.1:ENST00000446592.7:ENST00000667341.1:ENST00000675186.1:ENST00000652971.1:ENST00000661447.1:ENST00000674863.1:ENST00000675498.1:ENST00000675527.1:ENST00000676108.1:ENST00000657647.1:ENST00000675589.1:ENST00000675913.1:ENST00000675109.1:ENST00000671632.1:ENST00000671311.1:ENST00000676099.1:ENST00000660652.1:ENST00000675522.1:ENST00000675183.1:ENST00000658861.1:ENST00000663991.1:ENST00000675044.1:ENST00000675435.1:ENST00000674639.1:ENST00000676069.1:ENST00000675532.1:ENST00000674762.1:ENST00000523151.6:ENST00000675948.1:ENST00000665364.1:ENST00000657251.1:ENST00000675166.1:ENST00000674883.1:ENST00000675867.1:ENST00000674580.1:ENST00000675393.1:ENST00000520048.1:ENST00000674906.1:ENST00000676030.1:ENST00000670588.1:ENST00000675072.1:ENST00000664936.1:ENST00000652914.1:ENST00000657069.1	lncRNA	lncRNA	lncRNA	lncRNA	13	89	2	1.38457	1.462805	1.54104	0.0339289	0.0334448	0.146815	0.134145
chr21	44800088	44800188	7468714	0	-	0.39	(0.378,0.408]	chr21	761178	2	EXON_MRNA	EXON_MRNA:INTRON	UBE2G2	ENSG00000184787.19	ENST00000345496.7:ENST00000497630.5:ENST00000477954.5:ENST00000491513.5:ENST00000330942.9:ENST00000478200.1:ENST00000497664.5:ENST00000462569.5:ENST00000490450.5:ENST00000496395.2:ENST00000490091.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	77	2	1.21175	1.462745	1.71374	0.0680021	0.0274158	0.184298	0.136498
chr1	29119654	29119752	61045	0	+	0.581633	(0.57,1]	chr1	7792	30	UTR3	UTR3:EXON_MRNA	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000373798.5:ENST00000343067.9:ENST00000460378.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	14	47	2	1.41857	1.4627	1.50683	0.0378927	0.0214217	0.141283	0.123836
chr2	158476300	158476400	897333	0	+	0.42	(0.408,0.44]	chr2	99341	176	INTRON	INTRON	PKP4	ENSG00000144283.23	ENST00000389759.8:ENST00000426248.7:ENST00000389757.7:ENST00000457109.5:ENST00000452162.5:ENST00000411900.5:ENST00000421462.5:ENST00000462335.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	13	88	2	1.25594	1.462695	1.66945	0.0513299	0.0218479	0.158238	0.123836
chr5	95732171	95732267	2431250	0	+	0.4375	(0.408,0.44]	chr5	233639	1	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	RHOBTB3	ENSG00000164292.13	ENST00000510226.5:ENST00000504949.1:ENST00000506959.5:ENST00000506817.1:ENST00000379982.8:ENST00000512878.1:ENST00000510623.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	13	86	2	1.31633	1.46269	1.60905	0.0383278	0.02971	0.158629	0.129022
chr12	115959372	115959471	5422324	0	-	0.292929	(0.28,0.32]	chr12	518123	9	UTR3	UTR3:EXON_MRNA:INTRON	MED13L	ENSG00000123066.9	ENST00000552023.2:ENST00000281928.9:ENST00000648762.1:ENST00000648379.1:ENST00000650226.1:ENST00000649607.1:ENST00000648737.1:ENST00000649775.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	15	123	2	1.21344	1.4625650000000001	1.71169	0.046778	0.0253232	0.167716	0.12011
chr1	203798307	203798404	296706	0	+	0.412371	(0.408,0.44]	chr1	34129	8	CDS	CDS:UTR5:EXON_MRNA:INTRON	ZC3H11A:ZBED6	ENSG00000058673.17:ENSG00000257315.3	ENST00000367210.3:ENST00000453771.5:ENST00000432282.5:ENST00000466470.5:ENST00000638800.1:ENST00000461980.1:ENST00000367214.5:ENST00000639812.1:ENST00000367212.7:ENST00000332127.8:ENST00000550078.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	17	115	2	1.42291	1.46254	1.50217	0.022351	0.0222978	0.124385	0.116768
chr10	45875589	45875688	4607687	0	-	0.323232	(0.32,0.35]	chr10	424444	121	INTRON	INTRON	PARGP1	ENSG00000239883.9	ENST00000440803.7:ENST00000688192.1:ENST00000686367.1:ENST00000693310.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	8	65	2	1.42542	1.462535	1.49965	0.0718205	0.0542985	0.187046	0.182243
chr15	92904475	92904561	6103732	0	+	0.616279	(0.57,1]	chr15	581394	1	UTR5	UTR5:EXON_MRNA:PRIMIRNA:INTRON	ENSG00000279765:CHD2:MIR3175	ENSG00000279765.3:ENSG00000173575.22:ENSG00000284324.1	ENST00000629685.2:ENST00000630790.1:ENST00000626874.2:ENST00000394196.9:ENST00000635856.1:ENST00000420239.7:ENST00000628375.2:ENST00000625990.3:ENST00000577670.1:ENST00000626782.2	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:processed_transcript:primary_miRNA	12	41	2	1.26112	1.462355	1.66359	0.0533929	0.0224545	0.162935	0.124921
chr9	135941193	135941287	4372357	0	-	0.5	(0.476,0.515]	chr9	402514	11	INTRON	INTRON	UBAC1	ENSG00000130560.9	ENST00000371756.4:ENST00000489050.5:ENST00000465873.5:ENST00000471163.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	17	113	2	1.24792	1.462335	1.67675	0.0459059	0.00953323	0.149888	0.0863913
chr11	9586956	9587056	4730940	0	+	0.47	(0.44,0.476]	chr11	438131	1	SS5_PROX	SS5_PROX:INTRON	WEE1	ENSG00000166483.12	ENST00000680141.1:ENST00000450114.7:ENST00000299613.10:ENST00000681684.1:ENST00000530712.6:ENST00000530175.5:ENST00000532275.1:ENST00000527848.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	80	2	1.32393	1.4621300000000002	1.60033	0.0439888	0.030306	0.162255	0.130104
chr1	52491681	52491777	457943	0	-	0.229167	[0,0.28]	chr1	55052	5	INTRON	INTRON	TUT4	ENSG00000134744.14	ENST00000371544.7:ENST00000257177.9:ENST00000528642.5:ENST00000484723.6:ENST00000371541.5:ENST00000473856.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	92	2	1.35418	1.4616799999999999	1.56918	0.0757936	0.0481076	0.194427	0.171525
chr16	21866705	21866805	6461910	0	-	0.45	(0.44,0.476]	chr16	623467	5	INTRON	INTRON	NPIPB4	ENSG00000185864.18	ENST00000543449.1:ENST00000538859.1	protein_coding	processed_transcript	protein_coding	processed_transcript	22	146	2	1.24469	1.4611800000000001	1.67767	0.0352667	0.00642107	0.137535	0.0729995
chr21	32758579	32758679	7440341	0	-	0.23	[0,0.28]	chr21	759263	1	SS5_PROX	SS5_PROX:INTRON	PAXBP1	ENSG00000159086.15	ENST00000331923.9:ENST00000443785.5:ENST00000290178.4:ENST00000472588.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	26	257	2	1.37813	1.4608500000000002	1.54357	0.0325802	0.0108465	0.133687	0.0921842
chr5	175527510	175527607	2551027	0	+	0.329897	(0.32,0.35]	chr5	243564	9	UTR3	UTR3:EXON_MRNA	SFXN1	ENSG00000164466.13	ENST00000321442.10	protein_coding	protein_coding	protein_coding	protein_coding	18	142	2	1.30555	1.46045	1.61535	0.0428733	0.0112729	0.148082	0.0944799
chr1	75793381	75793468	144697	0	+	0.413793	(0.408,0.44]	chr1	16346	1	EXON_LNCRNA	EXON_LNCRNA:INTRON	RABGGTB	ENSG00000137955.16	ENST00000496055.5:ENST00000319942.8:ENST00000471759.5:ENST00000459697.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	21	153	2	1.21721	1.4604149999999998	1.70362	0.0469239	0.00560011	0.167993	0.0652128
chr5	171393979	171394079	2546631	0	+	0.28	[0,0.28]	chr5	243099	6	INTRON	INTRON	NPM1	ENSG00000181163.14	ENST00000517671.5:ENST00000676613.1:ENST00000678186.1:ENST00000678267.1:ENST00000677297.1:ENST00000521672.6:ENST00000679190.1:ENST00000677467.1:ENST00000678280.1:ENST00000676625.1:ENST00000679006.1:ENST00000351986.10:ENST00000676504.1:ENST00000676589.1:ENST00000677357.1:ENST00000679233.1:ENST00000296930.10:ENST00000393820.2:ENST00000521260.2:ENST00000518587.2:ENST00000678774.1:ENST00000677600.1:ENST00000677741.1:ENST00000677325.1:ENST00000677672.1:ENST00000677907.1:ENST00000677904.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	35	354	2	1.39737	1.46028	1.52319	0.0162027	0.0144659	0.109464	0.0974207
chr2	87470248	87470348	826071	0	+	0.36	(0.35,0.378]	chr2	92414	2	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	CYTOR:ENSG00000284879	ENSG00000222041.12:ENSG00000284879.1	ENST00000642796.1:ENST00000643589.1:ENST00000642451.1:ENST00000646386.1:ENST00000644478.1:ENST00000409139.6:ENST00000331944.10:ENST00000644125.1:ENST00000643743.1:ENST00000644577.1:ENST00000643276.1:ENST00000409898.2:ENST00000419680.6:ENST00000645257.1:ENST00000644976.1:ENST00000643070.1:ENST00000646855.1:ENST00000414584.1:ENST00000455131.5:ENST00000646636.1:ENST00000642293.1:ENST00000423846.5:ENST00000644040.1:ENST00000645138.1:ENST00000437561.2:ENST00000629257.1:ENST00000414030.6	lncRNA	lncRNA	lncRNA	lncRNA	10	69	2	1.21404	1.460055	1.70607	0.0632774	0.0482819	0.19754	0.153283
chr8	102386399	102386499	4012493	0	-	0.43	(0.408,0.44]	chr8	367237	244	INTRON	INTRON	UBR5	ENSG00000104517.13	ENST00000520539.6:ENST00000220959.8:ENST00000521922.5	protein_coding	protein_coding	protein_coding	protein_coding	17	110	2	1.08665	1.459375	1.8321	0.0593628	0.00996071	0.189982	0.0842166
chr4	55601974	55602074	2150350	0	-	0.24	[0,0.28]	chr4	211609	10	INTRON	INTRON	NMU	ENSG00000109255.11	ENST00000511469.5:ENST00000264218.7:ENST00000505262.5:ENST00000507338.1:ENST00000515325.5:ENST00000509371.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	17	162	2	1.22297	1.45929	1.69561	0.045019000000000003	0.0239554	0.163255	0.11951
chrX	154676517	154676614	7914562	0	-	0.371134	(0.35,0.378]	chrX	806053	14	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	GAB3	ENSG00000160219.12	ENST00000496390.5:ENST00000424127.3:ENST00000369575.7:ENST00000369568.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	69	2	1.4414	1.459095	1.47679	0.0629423	0.0466814	0.196658	0.151623
chr7	158640481	158640579	3688115	0	-	0.336735	(0.32,0.35]	chr7	342109	8	UTR3	UTR3:EXON_MRNA:INTRON	NCAPG2	ENSG00000146918.20	ENST00000356309.8:ENST00000432615.5:ENST00000409423.5:ENST00000441982.5:ENST00000467785.5:ENST00000409339.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	15	119	2	1.40348	1.458625	1.51377	0.0299484	0.0287248	0.142135	0.127066
chr2	53931236	53931334	1120168	0	-	0.408163	(0.378,0.408]	chr2	120046	26	INTRON	INTRON	PSME4	ENSG00000068878.15	ENST00000404125.6:ENST00000389993.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	15	94	2	1.13008	1.458555	1.78703	0.0517704	0.0240043	0.176696	0.119664
chr22	49651227	49651327	7602600	0	-	0.4	(0.378,0.408]	chr22	778594	238	INTRON	INTRON	MIR3667HG	ENSG00000188511.13	ENST00000414287.5:ENST00000416411.1:ENST00000689875.1:ENST00000400023.5:ENST00000405854.5	lncRNA	lncRNA	lncRNA	lncRNA	14	97	2	1.40351	1.45849	1.51347	0.0322039	0.0284091	0.138375	0.132543
chr5	37289225	37289324	2601905	0	-	0.474747	(0.44,0.476]	chr5	247329	12	UTR3	UTR3:EXON_MRNA	NUP155	ENSG00000113569.16	ENST00000231498.8	protein_coding	protein_coding	protein_coding	protein_coding	21	147	2	1.08492	1.4582950000000001	1.83167	0.059723	0.00403949	0.189982	0.0555432
chr7	157344554	157344654	3455376	0	+	0.29	(0.28,0.32]	chr7	323052	41	INTRON	INTRON	DNAJB6	ENSG00000105993.15	ENST00000441561.5:ENST00000429029.6:ENST00000262177.9:ENST00000486083.6:ENST00000417758.5:ENST00000459889.5:ENST00000443280.5:ENST00000488001.5:ENST00000441291.5:ENST00000437030.5:ENST00000412557.5:ENST00000453383.5:ENST00000439402.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	12	93	2	1.19334	1.458065	1.72279	0.0551834	0.0496859	0.18407	0.156383
chr4	176331559	176331657	2083218	0	+	0.377551	(0.35,0.378]	chr4	205895	34	UTR3	UTR3:EXON_MRNA	SPCS3	ENSG00000129128.13	ENST00000503362.2	protein_coding	protein_coding	protein_coding	protein_coding	97	697	2	1.22902	1.458005	1.68699	0.0152	0.00103254	0.0994822	0.0294259
chr1	42683766	42683866	83956	0	+	0.36	(0.35,0.378]	chr1	11019	3	SS5_PROX	SS5_PROX:INTRON	YBX1	ENSG00000065978.19	ENST00000321358.12:ENST00000332220.10:ENST00000436427.1:ENST00000467957.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	14	102	2	1.20284	1.457625	1.71241	0.0564772	0.019274	0.16701	0.119831
chr22	20951698	20951796	7480862	0	+	0.367347	(0.35,0.378]	chr22	763101	20	UTR3	UTR3:EXON_MRNA:INTRON	CRKL	ENSG00000099942.13	ENST00000354336.8:ENST00000411769.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	66	471	2	1.40538	1.45729	1.5092	0.00632044	0.0053048	0.0687526	0.0658805
chr4	67650706	67650806	2153948	0	-	0.38	(0.378,0.408]	chr4	212133	11	INTRON	INTRON	UBA6	ENSG00000033178.13	ENST00000322244.10	protein_coding	protein_coding	protein_coding	protein_coding	14	96	2	1.37524	1.45719	1.53914	0.0610755	0.014213	0.172411	0.103638
chr12	132789988	132790088	5449813	0	-	0.55	(0.515,0.57]	chr12	522031	3	INTRON	INTRON	GOLGA3	ENSG00000090615.16	ENST00000204726.9:ENST00000450791.8:ENST00000693666.1:ENST00000688114.1:ENST00000687190.1:ENST00000690511.1:ENST00000685283.1:ENST00000691696.1:ENST00000691636.1:ENST00000690897.1:ENST00000690465.1:ENST00000456883.7:ENST00000692253.1:ENST00000687502.1:ENST00000688772.1:ENST00000687479.1:ENST00000690709.1:ENST00000545875.4:ENST00000688251.1:ENST00000690573.1:ENST00000685195.1:ENST00000686425.1:ENST00000693437.1:ENST00000692831.1:ENST00000688068.1:ENST00000692951.1:ENST00000689441.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	58	2	1.22025	1.45716	1.69407	0.0515133	0.0459452	0.176696	0.149888
chr22	38484036	38484136	7587855	0	-	0.43	(0.408,0.44]	chr22	776711	7	UTR3	UTR3:EXON_MRNA	DDX17	ENSG00000100201.23	ENST00000403230.3:ENST00000396821.8	protein_coding	protein_coding	protein_coding	protein_coding	83	514	2	1.09562	1.45715	1.81868	0.0178243	0.00111788	0.113623	0.0306954
chr2	159766593	159766688	900036	0	+	0.389474	(0.378,0.408]	chr2	99576	16	INTRON	INTRON	MARCHF7	ENSG00000136536.15	ENST00000539065.5:ENST00000259050.8:ENST00000409175.6:ENST00000409591.5:ENST00000420397.1:ENST00000478396.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	61	2	1.38218	1.45635	1.53052	0.0744544	0.0444424	0.192012	0.162728
chr1	17423620	17423714	384823	0	-	0.468085	(0.44,0.476]	chr1	45481	4	INTRON	INTRON	RCC2	ENSG00000179051.14	ENST00000375436.9:ENST00000375433.3	protein_coding	protein_coding	protein_coding	protein_coding	11	73	2	1.38039	1.45618	1.53197	0.0762718	0.0211313	0.195539	0.122929
chr2	144515448	144515548	1241766	0	-	0.43	(0.408,0.44]	chr2	131755	1	SS5_PROX	SS5_PROX:INTRON	ZEB2	ENSG00000169554.23	ENST00000636471.1:ENST00000627532.3:ENST00000638128.1:ENST00000637304.1:ENST00000419938.5:ENST00000409487.7:ENST00000636732.2:ENST00000636026.2:ENST00000675069.1:ENST00000689298.1:ENST00000539609.7:ENST00000558170.6:ENST00000303660.8:ENST00000427902.5:ENST00000637267.2:ENST00000392861.6:ENST00000431672.4:ENST00000409211.5:ENST00000465308.5:ENST00000434448.5:ENST00000472146.5:ENST00000461784.3:ENST00000476394.5:ENST00000637591.2:ENST00000479735.1:ENST00000453352.5:ENST00000435831.5:ENST00000444559.5:ENST00000630572.2:ENST00000484313.3:ENST00000629955.1:ENST00000465070.5:ENST00000636445.1:ENST00000629520.2:ENST00000470879.5:ENST00000462355.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	21	139	2	1.42388	1.4558499999999999	1.48782	0.0202358	0.0150903	0.109958	0.108393
chr6	49616271	49616370	3105251	0	-	0.363636	(0.35,0.378]	chr6	290660	1	INTRON	INTRON	RHAG	ENSG00000112077.18	ENST00000371175.10:ENST00000646272.1:ENST00000646939.1:ENST00000646963.1:ENST00000642530.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	27	196	2	1.26497	1.4556399999999998	1.64631	0.0420633	0.00355929	0.148005	0.0548355
chr7	26200399	26200485	3506238	0	-	0.546512	(0.515,0.57]	chr7	327193	4	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	HNRNPA2B1	ENSG00000122566.22	ENST00000679318.1:ENST00000677339.1:ENST00000678501.1:ENST00000676903.1:ENST00000608362.2:ENST00000677631.1:ENST00000676749.1:ENST00000677574.1:ENST00000679123.1:ENST00000677906.1:ENST00000476233.2:ENST00000677669.1:ENST00000677321.1:ENST00000678277.1:ENST00000677571.1:ENST00000679124.1:ENST00000676932.1:ENST00000678973.1:ENST00000678183.1:ENST00000679021.1:ENST00000678631.1:ENST00000678998.1:ENST00000490912.6:ENST00000354667.8:ENST00000618183.5:ENST00000677839.1:ENST00000677037.1:ENST00000678449.1:ENST00000679001.1:ENST00000678962.1:ENST00000676524.1:ENST00000678935.1:ENST00000678675.1:ENST00000676746.1:ENST00000356674.8:ENST00000678431.1:ENST00000678697.1:ENST00000678779.1:ENST00000676497.1:ENST00000677396.1:ENST00000360787.8:ENST00000679243.1:ENST00000677656.1:ENST00000463181.5:ENST00000678884.1:ENST00000495810.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	19	104	2	1.05847	1.455625	1.85278	0.0611881	0.00514125	0.172724	0.064995
chr22	21762047	21762147	7560319	0	-	0.53	(0.515,0.57]	chr22	773344	25	UTR3	UTR3:EXON_MRNA	MAPK1	ENSG00000100030.15	ENST00000215832.11	protein_coding	protein_coding	protein_coding	protein_coding	17	96	2	1.24191	1.455365	1.66882	0.0437893	0.00913026	0.14901	0.0855292
chr1	32678737	32678836	66120	0	+	0.454545	(0.44,0.476]	chr1	8465	48	INTRON	INTRON	RBBP4	ENSG00000162521.19	ENST00000414241.7:ENST00000373493.10:ENST00000492348.6:ENST00000373485.5:ENST00000458695.6:ENST00000463378.5:ENST00000460669.5:ENST00000482190.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	81	2	1.32592	1.455225	1.58453	0.0472287	0.0293513	0.152684	0.142102
chr21	37202293	37202384	7406186	0	+	0.593407	(0.57,1]	chr21	754833	1	UTR3	UTR3:EXON_MRNA	TTC3	ENSG00000182670.14	ENST00000492275.6:ENST00000418766.6:ENST00000450533.6:ENST00000696812.1:ENST00000696811.1:ENST00000463216.6:ENST00000411496.2:ENST00000399017.6:ENST00000354749.6:ENST00000479930.5:ENST00000476784.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	17	58	2	1.09783	1.45519	1.81255	0.0678042	0.00436428	0.184298	0.0603562
chr1	35736196	35736295	422537	0	-	0.323232	(0.32,0.35]	chr1	50898	42	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	CLSPN	ENSG00000092853.14	ENST00000251195.9:ENST00000318121.8:ENST00000466308.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	97	2	1.36611	1.45515	1.54419	0.0483152	0.0315293	0.172011	0.13151
chr12	69272776	69272875	5163850	0	+	0.313131	(0.28,0.32]	chr12	489054	34	UTR3	UTR3:EXON_MRNA	CPSF6	ENSG00000111605.18	ENST00000435070.7:ENST00000650046.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	96	2	1.34841	1.455075	1.56174	0.0525144	0.039921	0.178179	0.143115
chr4	55410714	55410814	1960738	0	+	0.32	(0.28,0.32]	chr4	196553	70	INTRON	INTRON	TMEM165	ENSG00000134851.13	ENST00000381334.10:ENST00000506198.5:ENST00000508404.5:ENST00000511710.1:ENST00000502797.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	12	101	2	1.40698	1.4550049999999999	1.50303	0.0778529	0.0220301	0.196685	0.123836
chr7	23447588	23447688	3503438	0	-	0.39	(0.378,0.408]	chr7	326910	164	INTRON	INTRON	IGF2BP3	ENSG00000136231.14	ENST00000258729.8:ENST00000421467.6:ENST00000468263.5:ENST00000491719.5:ENST00000476938.5:ENST00000468005.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	14	98	2	1.23177	1.4549699999999999	1.67817	0.0747101	0.00957714	0.192652	0.0865341
chr3	6572668	6572767	1356969	0	+	0.252525	[0,0.28]	chr3	142512	140	INTRON	INTRON	ENSG00000189229	ENSG00000189229.12	ENST00000433639.1:ENST00000655754.1:ENST00000653839.1:ENST00000662846.1:ENST00000414438.2:ENST00000658468.1:ENST00000669512.1:ENST00000667028.1:ENST00000655541.1:ENST00000668643.1:ENST00000671568.1:ENST00000671036.1:ENST00000669798.1:ENST00000655753.1:ENST00000655856.1:ENST00000658398.1:ENST00000661518.1:ENST00000661279.1:ENST00000655495.1:ENST00000663041.1:ENST00000659827.1:ENST00000667716.1:ENST00000662508.1:ENST00000668416.1:ENST00000658133.1:ENST00000342990.4:ENST00000660054.1:ENST00000671370.1	lncRNA	lncRNA	lncRNA	lncRNA	11	110	2	1.4296	1.45487	1.48014	0.054993	0.043726	0.165463	0.162255
chr2	74154202	74154300	1156879	0	-	0.44898	(0.44,0.476]	chr2	123692	18	UTR3	UTR3:EXON_MRNA	MOB1A	ENSG00000114978.18	ENST00000396049.5	protein_coding	protein_coding	protein_coding	protein_coding	8	53	2	1.35267	1.454645	1.55662	0.0688347	0.060678	0.192323	0.184298
chr18	9944025	9944124	6873650	0	+	0.474747	(0.44,0.476]	chr18	680892	66	INTRON	INTRON	VAPA	ENSG00000101558.14	ENST00000400000.7:ENST00000340541.4:ENST00000584796.5:ENST00000583879.5:ENST00000583475.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	19	126	2	1.19201	1.4546350000000001	1.71726	0.0501504	0.00642964	0.156383	0.0730725
chr5	10397544	10397644	2318097	0	+	0.39	(0.378,0.408]	chr5	224667	2	SS5_PROX	SS5_PROX:INTRON	MARCHF6	ENSG00000145495.16	ENST00000274140.10:ENST00000449913.6:ENST00000511802.5:ENST00000503788.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	16	108	2	1.36724	1.4544350000000001	1.54163	0.0293591	0.0243836	0.131368	0.128055
chr7	26194194	26194290	3506163	0	-	0.479167	(0.476,0.515]	chr7	327165	1	INTRON	INTRON	HNRNPA2B1	ENSG00000122566.22	ENST00000679318.1:ENST00000677339.1:ENST00000678501.1:ENST00000676903.1:ENST00000608362.2:ENST00000677631.1:ENST00000676749.1:ENST00000677574.1:ENST00000679123.1:ENST00000677906.1:ENST00000476233.2:ENST00000677669.1:ENST00000677321.1:ENST00000678277.1:ENST00000677571.1:ENST00000679124.1:ENST00000676932.1:ENST00000678973.1:ENST00000678183.1:ENST00000679021.1:ENST00000678035.1:ENST00000677075.1:ENST00000678075.1:ENST00000678631.1:ENST00000678998.1:ENST00000490912.6:ENST00000354667.8:ENST00000618183.5:ENST00000677839.1:ENST00000677037.1:ENST00000678449.1:ENST00000679001.1:ENST00000678962.1:ENST00000676524.1:ENST00000678935.1:ENST00000678675.1:ENST00000676746.1:ENST00000356674.8:ENST00000678431.1:ENST00000678697.1:ENST00000678779.1:ENST00000676497.1:ENST00000677396.1:ENST00000360787.8:ENST00000679243.1:ENST00000677656.1:ENST00000463181.5:ENST00000678884.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	22	149	2	1.25774	1.45388	1.65002	0.0327053	0.00769742	0.145164	0.0754719
chr4	39702483	39702583	1953035	0	+	0.52	(0.515,0.57]	chr4	195630	37	INTRON	INTRON	UBE2K	ENSG00000078140.14	ENST00000510934.5:ENST00000261427.10:ENST00000438068.6:ENST00000513231.5:ENST00000503368.5:ENST00000445950.2:ENST00000510719.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	13	74	2	1.36316	1.4535749999999998	1.54399	0.0375126	0.0259541	0.156054	0.121732
chr1	31925957	31926057	414311	0	-	0.51	(0.476,0.515]	chr1	49920	14	INTRON	INTRON	PTP4A2	ENSG00000184007.22	ENST00000647444.2:ENST00000649841.1:ENST00000468531.1:ENST00000534796.5:ENST00000532289.1:ENST00000526960.1:ENST00000524384.5:ENST00000528840.1:ENST00000494444.2:ENST00000529477.5:ENST00000533408.1:ENST00000475464.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	14	93	2	1.30826	1.45328	1.5983	0.0587053	0.0132605	0.167915	0.100131
chr4	126633985	126634085	2237049	0	-	0.33	(0.32,0.35]	chr4	219023	1685	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	13	97	2	1.36759	1.45309	1.53859	0.0534261	0.0294508	0.162935	0.142135
chr2	47893809	47893908	1115997	0	-	0.383838	(0.378,0.408]	chr2	119694	52	INTRON	INTRON	FBXO11	ENSG00000138081.22	ENST00000684712.1:ENST00000682451.1:ENST00000403359.8:ENST00000683894.1:ENST00000681999.1:ENST00000682975.1:ENST00000684085.1:ENST00000492225.5:ENST00000424163.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	12	80	2	1.34169	1.45241	1.56313	0.0474151	0.0354056	0.153019	0.150868
chr16	74601363	74601463	6525275	0	-	0.4	(0.378,0.408]	chr16	631842	382	INTRON	INTRON	GLG1	ENSG00000090863.12	ENST00000205061.9:ENST00000422840.7:ENST00000447066.6:ENST00000562090.5:ENST00000567951.5:ENST00000627032.2:ENST00000565260.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	69	2	1.38218	1.452185	1.52219	0.0531838	0.0444424	0.162728	0.162538
chr2	233849859	233849959	1343814	0	-	0.39	(0.378,0.408]	chr2	140851	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	HJURP	ENSG00000123485.12	ENST00000432087.5:ENST00000441687.5:ENST00000411486.7:ENST00000414924.5:ENST00000454020.1:ENST00000453122.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	57	2	1.39189	1.45206	1.51223	0.0751636	0.051139	0.193731	0.176696
chr9	130734754	130734854	4214072	0	+	0.51	(0.476,0.515]	chr9	386427	199	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000393293.4	protein_coding	protein_coding	protein_coding	protein_coding	12	79	2	1.41803	1.4520149999999998	1.486	0.0430512	0.0320614	0.148082	0.145026
chr11	34092456	34092556	4768075	0	+	0.47	(0.44,0.476]	chr11	441021	4	SS5_PROX	SS5_PROX:INTRON	CAPRIN1	ENSG00000135387.21	ENST00000341394.9:ENST00000528856.5:ENST00000389645.7:ENST00000532820.5:ENST00000530820.5:ENST00000529307.1:ENST00000533657.5:ENST00000528948.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	14	93	2	1.22624	1.452005	1.67777	0.0558598	0.0155465	0.165463	0.109378
chr11	64770818	64770908	4965226	0	-	0.433333	(0.408,0.44]	chr11	467525	3	SS3_PROX	SS3_PROX:INTRON	SF1	ENSG00000168066.21	ENST00000334944.9:ENST00000227503.13:ENST00000377394.7:ENST00000448404.5:ENST00000377390.8:ENST00000377387.5:ENST00000681407.1:ENST00000433274.6:ENST00000496969.1:ENST00000633899.1:ENST00000413951.5:ENST00000432725.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	12	80	2	1.36246	1.451985	1.54151	0.0386802	0.0368312	0.159946	0.138959
chr6	17641839	17641937	3065548	0	-	0.346939	(0.32,0.35]	chr6	284800	14	INTRON	INTRON	NUP153	ENSG00000124789.12	ENST00000613258.4:ENST00000537253.5:ENST00000262077.3	protein_coding	protein_coding	protein_coding	protein_coding	10	78	2	1.40199	1.4519199999999999	1.50185	0.0589483	0.0432025	0.167915	0.162255
chr11	86024332	86024429	5014392	0	-	0.340206	(0.32,0.35]	chr11	473008	4	INTRON	INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000630913.2:ENST00000528398.5:ENST00000356360.9:ENST00000534412.5:ENST00000531558.1:ENST00000531930.5:ENST00000532041.5:ENST00000525162.5:ENST00000528256.1:ENST00000528411.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	12	85	2	1.21206	1.451565	1.69107	0.0517392	0.0501513	0.17488	0.159306
chr11	64774602	64774702	4965267	0	-	0.47	(0.44,0.476]	chr11	467538	7	INTRON	INTRON	SF1	ENSG00000168066.21	ENST00000334944.9:ENST00000227503.13:ENST00000377394.7:ENST00000448404.5:ENST00000377390.8:ENST00000377387.5:ENST00000681407.1:ENST00000433274.6:ENST00000633899.1:ENST00000413951.5:ENST00000432725.1:ENST00000482693.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	26	171	2	1.11681	1.4515	1.78619	0.048127	0.00273382	0.153019	0.0483437
chr9	125238041	125238140	4352464	0	-	0.434343	(0.408,0.44]	chr9	399596	10	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	HSPA5	ENSG00000044574.9	ENST00000324460.7:ENST00000680257.1:ENST00000679355.1:ENST00000681045.1:ENST00000681424.1:ENST00000681675.1:ENST00000681544.1:ENST00000680272.1:ENST00000679475.1:ENST00000680494.1:ENST00000681774.1:ENST00000680640.1:ENST00000680032.1:ENST00000681540.1:ENST00000680234.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	15	93	2	1.32249	1.451375	1.58026	0.0444624	0.025449	0.149888	0.133676
chr7	119729538	119729637	3628633	0	-	0.30303	(0.28,0.32]	chr7	337319	242	INTRON	INTRON	LINC02476	ENSG00000225546.6	ENST00000660268.1:ENST00000431071.5	lncRNA	lncRNA	lncRNA	lncRNA	11	95	2	1.3645	1.4512399999999999	1.53798	0.0687143	0.0287839	0.184298	0.140044
chr11	85988753	85988853	5014018	0	-	0.31	(0.28,0.32]	chr11	472941	44	INTRON	INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000530692.5:ENST00000630913.2:ENST00000529760.5:ENST00000528398.5:ENST00000356360.9:ENST00000529016.5:ENST00000526961.5:ENST00000530542.1	protein_coding	protein_coding	protein_coding	protein_coding	15	122	2	1.19062	1.451155	1.71169	0.0503993	0.0253232	0.17488	0.12011
chr15	51910785	51910884	6027964	0	+	0.323232	(0.32,0.35]	chr15	574346	21	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	TMOD3	ENSG00000138594.14	ENST00000308580.12:ENST00000560549.5:ENST00000561438.5:ENST00000560725.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	12	95	2	1.33306	1.45109	1.56912	0.0593533	0.0247709	0.168806	0.131869
chr1	207767103	207767195	305054	0	+	0.456522	(0.44,0.476]	chr1	35108	2	CDS	CDS:EXON_MRNA	CD46	ENSG00000117335.21	ENST00000695779.1:ENST00000695777.1:ENST00000695778.1:ENST00000496723.2:ENST00000695782.1:ENST00000695781.1:ENST00000695780.1:ENST00000636114.2:ENST00000367042.6:ENST00000322875.8:ENST00000322918.9:ENST00000354848.5:ENST00000357714.5:ENST00000358170.6:ENST00000367041.5:ENST00000367047.5:ENST00000695783.1:ENST00000695784.1:ENST00000469535.5:ENST00000360212.6:ENST00000480003.5:ENST00000695785.1:ENST00000464082.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	22	140	2	1.26595	1.45107	1.63619	0.0241781	0.0132839	0.130351	0.0944742
chr11	74232601	74232701	4827143	0	+	0.33	(0.32,0.35]	chr11	450488	12	INTRON	INTRON	PPME1	ENSG00000214517.10	ENST00000328257.13:ENST00000398427.6:ENST00000543525.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	16	117	2	1.18138	1.4510550000000002	1.72073	0.0455845	0.0228737	0.164236	0.118056
chr6	31838119	31838211	2843868	0	+	0.5	(0.476,0.515]	chr6	267918	3	INTRON	INTRON	SNHG32	ENSG00000204387.14	ENST00000375640.7:ENST00000375641.6:ENST00000375635.6:ENST00000375638.7:ENST00000648677.1:ENST00000375642.6:ENST00000614363.4:ENST00000395789.5:ENST00000375633.5:ENST00000395788.3	lncRNA	lncRNA	lncRNA	lncRNA	16	102	2	1.13137	1.45105	1.77073	0.055492	0.0151174	0.165463	0.108513
chr2	113894752	113894852	854290	0	+	0.37	(0.35,0.378]	chr2	95895	36	INTRON	INTRON	ACTR3	ENSG00000115091.12	ENST00000443297.5:ENST00000263238.7:ENST00000415792.5:ENST00000446821.5:ENST00000535589.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	60	2	1.40722	1.45084	1.49446	0.0733776	0.054297	0.190105	0.182243
chr1	230092332	230092432	334330	0	+	0.42	(0.408,0.44]	chr1	38930	4	INTRON	INTRON	GALNT2	ENSG00000143641.10	ENST00000494106.1:ENST00000366672.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	61	2	1.44993	1.450775	1.45162	0.0638951	0.0451203	0.177824	0.163518
chr19	38836457	38836545	7180689	0	-	0.375	(0.35,0.378]	chr19	725842	2	UTR3	UTR3:EXON_MRNA	HNRNPL	ENSG00000104824.18	ENST00000221419.10:ENST00000647557.1:ENST00000595443.5:ENST00000388749.7:ENST00000601449.5:ENST00000595804.5:ENST00000597731.1:ENST00000595164.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	18	128	2	1.36943	1.45046	1.53149	0.0256206	0.0220832	0.123903	0.120376
chr10	102106488	102106582	4681185	0	-	0.223404	[0,0.28]	chr10	432090	1	UTR3	UTR3:EXON_MRNA	LDB1	ENSG00000198728.11	ENST00000673968.1	protein_coding	protein_coding	protein_coding	protein_coding	21	207	2	1.16803	1.45038	1.73273	0.0653186	0.00753474	0.180183	0.0773151
chr6	27129021	27129119	3072328	0	-	0.377551	(0.35,0.378]	chr6	285574	22	INTRON	INTRON	H2BC11	ENSG00000124635.9	ENST00000607124.1:ENST00000606923.1	protein_coding	protein_coding	protein_coding	protein_coding	22	154	2	1.32252	1.45032	1.57812	0.0201551	0.0182276	0.121243	0.107842
chr1	25336614	25336689	403255	0	-	0.36	(0.35,0.378]	chr1	48410	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RSRP1	ENSG00000117616.18	ENST00000473314.6:ENST00000561867.1:ENST00000568996.1:ENST00000568399.1:ENST00000562018.1:ENST00000567741.1:ENST00000566599.1:ENST00000564413.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	64	2	1.38867	1.4502350000000002	1.5118	0.0789277	0.0441117	0.198963	0.162255
chr8	37883903	37884003	3935789	0	-	0.29	(0.28,0.32]	chr8	360576	59	INTRON	INTRON	RAB11FIP1	ENSG00000156675.16	ENST00000330843.9:ENST00000287263.8:ENST00000522727.5	protein_coding	protein_coding	protein_coding	protein_coding	9	78	2	1.4428	1.449985	1.45717	0.0712927	0.0472947	0.185716	0.16913
chr6	17651237	17651333	3065645	0	-	0.447917	(0.44,0.476]	chr6	284818	16	INTRON	INTRON	NUP153	ENSG00000124789.12	ENST00000613258.4:ENST00000537253.5:ENST00000262077.3	protein_coding	protein_coding	protein_coding	protein_coding	15	98	2	1.24673	1.449945	1.65316	0.0424533	0.0192752	0.161763	0.108861
chr20	4007853	4007953	7309331	0	-	0.53	(0.515,0.57]	chr20	744300	331	INTRON	INTRON	RNF24	ENSG00000101236.17	ENST00000336095.10:ENST00000358395.11:ENST00000545616.2	protein_coding	protein_coding	protein_coding	protein_coding	10	57	2	1.27162	1.4498799999999998	1.62814	0.0626162	0.035203	0.175915	0.150193
chr9	37167230	37167329	4118127	0	+	0.333333	(0.32,0.35]	chr9	375384	71	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000322831.6:ENST00000461038.5:ENST00000488607.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	23	171	2	1.19461	1.44983	1.70505	0.0325704	0.0122272	0.145164	0.0910127
chr1	54226730	54226830	461940	0	-	0.31	(0.28,0.32]	chr1	55691	14	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	SSBP3	ENSG00000157216.16	ENST00000610401.5:ENST00000357475.9:ENST00000371319.8:ENST00000417664.7:ENST00000533946.6:ENST00000326956.12:ENST00000528930.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	16	139	2	1.43233	1.44964	1.46695	0.0309608	0.028373	0.138205	0.13151
chr16	85577342	85577442	6415605	0	+	0.62	(0.57,1]	chr16	615470	206	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	22	74	2	1.4354	1.44922	1.46304	0.0148782	0.0122775	0.107116	0.091087
chr6	42080474	42080574	2864984	0	+	0.47	(0.44,0.476]	chr6	271004	8	UTR3	UTR3:EXON_MRNA:INTRON	TAF8	ENSG00000137413.17	ENST00000686935.1:ENST00000372982.8:ENST00000456846.6:ENST00000372977.8:ENST00000688562.1:ENST00000686229.1:ENST00000687266.1:ENST00000685500.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	13	89	2	1.37831	1.448945	1.51958	0.0447298	0.0248162	0.163255	0.12011
chr6	10930036	10930119	2812197	0	+	0.361446	(0.35,0.378]	chr6	264646	2	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	SYCP2L	ENSG00000153157.13	ENST00000341041.8:ENST00000283141.11:ENST00000543878.5:ENST00000474197.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	15	111	2	1.41246	1.44881	1.48516	0.0325745	0.0259086	0.133687	0.133676
chr10	930027	930127	4542571	0	-	0.49	(0.476,0.515]	chr10	419310	52	INTRON	INTRON	LARP4B	ENSG00000107929.16	ENST00000316157.8:ENST00000690516.1:ENST00000476529.5:ENST00000406525.6:ENST00000481118.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	15	101	2	1.41305	1.4487299999999999	1.48441	0.0315624	0.0259752	0.144381	0.12182
chr11	65437951	65438050	4805922	0	+	0.545455	(0.515,0.57]	chr11	446554	153	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	96	493	2	1.13896	1.4485700000000001	1.75818	0.0114979	8.65954e-4	0.0958242	0.0269024
chr22	41850743	41850843	7526174	0	+	0.48	(0.476,0.515]	chr22	769353	170	INTRON	INTRON	SREBF2	ENSG00000198911.12	ENST00000612482.4:ENST00000361204.9:ENST00000424354.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	18	119	2	1.25414	1.4485649999999999	1.64299	0.0508046	0.00758777	0.156699	0.0773603
chr19	28532102	28532202	7166416	0	-	0.26	[0,0.28]	chr19	724189	639	INTRON	INTRON	ENSG00000283403:ENSG00000267243	ENSG00000283403.1:ENSG00000267243.6	ENST00000592347.5:ENST00000593065.5	lncRNA	lncRNA	lncRNA	lncRNA	19	181	2	1.2685	1.44854	1.62858	0.0357902	0.0246259	0.152216	0.12011
chr11	65434655	65434755	4805889	0	+	0.52	(0.515,0.57]	chr11	446554	120	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	83	424	2	1.15886	1.44852	1.73818	0.0110726	0.00121925	0.0930113	0.0320012
chr14	21267542	21267639	5835150	0	-	0.43299	(0.408,0.44]	chr14	554469	22	INTRON	INTRON	HNRNPC	ENSG00000092199.19	ENST00000336053.10:ENST00000553300.6:ENST00000554969.5:ENST00000556142.5:ENST00000554455.5:ENST00000553753.5:ENST00000555309.5:ENST00000555914.5:ENST00000557442.5:ENST00000556628.5:ENST00000556513.5:ENST00000555883.5:ENST00000557201.5:ENST00000420743.6:ENST00000554539.5:ENST00000554383.5:ENST00000555215.5:ENST00000555137.5:ENST00000554891.5:ENST00000556226.5:ENST00000555176.5:ENST00000553614.5:ENST00000557336.1:ENST00000557768.1:ENST00000557033.1:ENST00000555127.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	17	114	2	1.33747	1.4482249999999999	1.55898	0.0346834	0.0154752	0.136937	0.108994
chr1	25460488	25460588	48248	0	+	0.49	(0.476,0.515]	chr1	5949	12	INTRON	INTRON	MACO1	ENSG00000204178.11	ENST00000399766.7:ENST00000374343.5:ENST00000647928.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	13	86	2	1.37743	1.447865	1.5183	0.0477443	0.0223248	0.153019	0.124527
chr12	93409642	93409741	5387912	0	-	0.343434	(0.32,0.35]	chr12	513711	41	UTR3	UTR3:EXON_MRNA	UBE2N	ENSG00000177889.10	ENST00000318066.7:ENST00000550657.1	protein_coding	protein_coding	protein_coding	protein_coding	25	194	2	1.23363	1.4474399999999998	1.66125	0.0348909	0.00788118	0.13747500000000001	0.0794495
chr3	9409923	9410023	1359007	0	+	0.34	(0.32,0.35]	chr3	142655	116	INTRON	INTRON	SETD5	ENSG00000168137.20	ENST00000402198.7:ENST00000431285.5:ENST00000683012.1:ENST00000463180.5:ENST00000478475.5:ENST00000415650.5:ENST00000682536.1:ENST00000663774.1:ENST00000665872.1:ENST00000666307.1:ENST00000693430.1:ENST00000691925.1:ENST00000684606.1:ENST00000691175.1:ENST00000688835.1:ENST00000683262.1:ENST00000443339.5:ENST00000406341.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	16	117	2	1.22668	1.44736	1.66804	0.0389728	0.0271264	0.160909	0.123904
chr6	24719154	24719222	3070728	0	-	0.308824	(0.28,0.32]	chr6	285370	1	INTRON	INTRON	C6orf62	ENSG00000112308.13	ENST00000378102.3	protein_coding	protein_coding	protein_coding	protein_coding	84	704	2	1.40239	1.447175	1.49196	0.0115692	0.00388388	0.0889104	0.0567338
chr5	34184153	34184251	2599926	0	-	0.336735	(0.32,0.35]	chr5	247053	9	INTRON	INTRON	GUSBP18	ENSG00000215158.9	ENST00000514048.5:ENST00000507274.1:ENST00000508395.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	12	91	2	1.4301	1.44712	1.46414	0.065059	0.0272422	0.179599	0.136494
chr17	81563344	81563443	6848838	0	-	0.464646	(0.44,0.476]	chr17	678117	17	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	NPLOC4	ENSG00000182446.14	ENST00000331134.11:ENST00000572760.5:ENST00000572346.5:ENST00000573519.5:ENST00000573876.1:ENST00000571714.5:ENST00000572824.1:ENST00000573212.5:ENST00000576713.6:ENST00000374747.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	20	132	2	1.32379	1.447015	1.57024	0.0320814	0.0104257	0.132091	0.0902296
chr6	131607351	131607427	3221455	0	-	0.460526	(0.44,0.476]	chr6	299411	4	INTRON	INTRON	MED23	ENSG00000112282.18	ENST00000354577.8:ENST00000368068.8:ENST00000368060.7:ENST00000368058.5:ENST00000368053.8:ENST00000539158.1	protein_coding	protein_coding	protein_coding	protein_coding	13	87	2	1.20796	1.4464899999999998	1.68502	0.0783119	0.0115528	0.197588	0.0962115
chr5	890266	890363	2564609	0	-	0.57732000000000006	(0.57,1]	chr5	245524	1	INTRON	INTRON	BRD9	ENSG00000028310.18	ENST00000467963.6:ENST00000495265.5:ENST00000490814.6:ENST00000489816.5:ENST00000483173.5:ENST00000466684.5:ENST00000489093.1:ENST00000487688.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	38	2	1.42298	1.446145	1.46931	0.0510995	0.0325674	0.176696	0.133687
chr11	13705033	13705131	4742674	0	+	0.295918	(0.28,0.32]	chr11	439171	42	INTRON	INTRON	FAR1	ENSG00000197601.13	ENST00000354817.8:ENST00000532701.1:ENST00000524933.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	85	2	1.4144	1.446075	1.47775	0.0653002	0.042942	0.180158	0.162255
chr4	102825559	102825621	2213341	0	-	0.5	(0.476,0.515]	chr4	216763	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	UBE2D3	ENSG00000109332.20	ENST00000453744.7:ENST00000394804.6:ENST00000394803.9:ENST00000394801.8:ENST00000343106.9:ENST00000503742.5:ENST00000321805.11:ENST00000350435.11:ENST00000338145.7:ENST00000349311.12:ENST00000357194.10:ENST00000505207.5:ENST00000507845.5:ENST00000502404.5:ENST00000505307.5:ENST00000510129.5:ENST00000502563.5:ENST00000508238.5:ENST00000514755.5:ENST00000508974.5:ENST00000502690.5:ENST00000508818.5:ENST00000503418.5:ENST00000508249.1:ENST00000513098.5:ENST00000503282.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	66	2	1.40757	1.44599	1.48441	0.0707852	0.0315624	0.184528	0.144381
chr5	54018509	54018609	2617989	0	-	0.42	(0.408,0.44]	chr5	248835	1065	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	74	2	1.42102	1.44584	1.47066	0.0457145	0.0389354	0.160836	0.149888
chr2	27355686	27355786	1086868	0	-	0.34	(0.32,0.35]	chr2	116363	2	SS5_PROX	SS5_PROX:INTRON	GTF3C2	ENSG00000115207.15	ENST00000359541.6:ENST00000264720.8:ENST00000457748.1:ENST00000423998.1	protein_coding	protein_coding	protein_coding	protein_coding	11	87	2	1.27507	1.44549	1.61591	0.0696455	0.0277247	0.184298	0.137011
chr19	45790252	45790328	7193319	0	-	0.473684	(0.44,0.476]	chr19	728508	2	INTRON	INTRON	DMWD	ENSG00000185800.12	ENST00000270223.7:ENST00000377735.7:ENST00000601370.1:ENST00000597053.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	61	2	1.34221	1.4454449999999999	1.54868	0.0656882	0.0457575	0.181162	0.164677
chr1	70216233	70216333	142535	0	+	0.37	(0.35,0.378]	chr1	15965	101	INTRON	INTRON	SRSF11	ENSG00000116754.14	ENST00000370951.5:ENST00000463877.1:ENST00000687381.1:ENST00000370950.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	60	2	1.4414	1.44537	1.44934	0.0658369	0.0629423	0.196658	0.181518
chr12	31300612	31300711	5302599	0	-	0.363636	(0.35,0.378]	chr12	504664	20	INTRON	INTRON	SINHCAF	ENSG00000139146.14	ENST00000337682.9:ENST00000539409.5:ENST00000454658.6:ENST00000542983.1:ENST00000539004.5:ENST00000543615.1	protein_coding	protein_coding	protein_coding	protein_coding	8	60	2	1.4414	1.44537	1.44934	0.0658369	0.0629423	0.196658	0.181518
chr20	47341456	47341556	7349359	0	-	0.44	(0.408,0.44]	chr20	749346	225	INTRON	INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000435836.5:ENST00000446894.5:ENST00000441977.1	protein_coding	protein_coding	protein_coding	protein_coding	13	87	2	1.42285	1.4452349999999998	1.46762	0.0421231	0.0267854	0.148082	0.134871
chr16	81492253	81492353	6405472	0	+	0.37	(0.35,0.378]	chr16	615026	464	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8	protein_coding	protein_coding	protein_coding	protein_coding	8	60	2	1.3017	1.44516	1.58862	0.0757564	0.0615516	0.194427	0.193423
chr1	1664118	1664215	360667	0	-	0.453608	(0.44,0.476]	chr1	41974	28	UTR3	UTR3:EXON_MRNA:INTRON	SLC35E2B	ENSG00000189339.12	ENST00000614300.4:ENST00000617444.5:ENST00000611123.1:ENST00000480991.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	19	125	2	1.25141	1.4450349999999998	1.63866	0.037478	0.011148	0.14006	0.0936137
chr4	70977635	70977734	1971263	0	+	0.323232	(0.32,0.35]	chr4	197601	10	INTRON	INTRON	MOB1B	ENSG00000173542.9	ENST00000309395.7:ENST00000396051.2:ENST00000511449.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	16	125	2	1.25403	1.4449649999999998	1.6359	0.0636611	0.0103455	0.177595	0.0896084
chr9	109083123	109083222	4312230	0	-	0.40404	(0.378,0.408]	chr9	396356	18	INTRON	INTRON	TMEM245	ENSG00000106771.13	ENST00000374586.8:ENST00000413712.6:ENST00000491854.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	66	2	1.35931	1.444915	1.53052	0.0744544	0.0393907	0.192012	0.161534
chr6	37172371	37172467	2855274	0	+	0.46875	(0.44,0.476]	chr6	269927	5	INTRON	INTRON	PIM1	ENSG00000137193.14	ENST00000373509.6	protein_coding	protein_coding	protein_coding	protein_coding	31	187	2	1.37024	1.44491	1.51958	0.0248162	0.00858249	0.12011	0.083729
chr11	85966846	85966946	5013788	0	-	0.5	(0.476,0.515]	chr11	472906	57	INTRON	INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000530692.5:ENST00000526548.3:ENST00000630913.2:ENST00000529760.5:ENST00000528398.5:ENST00000532603.5:ENST00000356360.9:ENST00000529016.5:ENST00000526961.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	61	2	1.4095	1.444865	1.48023	0.0559072	0.054012	0.18407	0.16443
chr21	46197564	46197663	7470550	0	-	0.515152	(0.476,0.515]	chr21	761464	9	INTRON	INTRON	LSS	ENSG00000160285.15	ENST00000356396.8:ENST00000397728.8:ENST00000457828.6:ENST00000522411.5	protein_coding	protein_coding	protein_coding	protein_coding	13	86	2	1.38299	1.44477	1.50655	0.0361854	0.0316424	0.152746	0.13151
chr3	25648663	25648763	1642007	0	-	0.43	(0.408,0.44]	chr3	168598	28	INTRON	INTRON	TOP2B	ENSG00000077097.16	ENST00000264331.9:ENST00000435706.6:ENST00000424225.1	protein_coding	protein_coding	protein_coding	protein_coding	11	75	2	1.39095	1.44442	1.49789	0.046481	0.0390091	0.161009	0.151299
chr16	90157133	90157233	6424447	0	+	0.47	(0.44,0.476]	chr16	617209	193	INTRON	INTRON	FAM157C	ENSG00000260528.6	ENST00000568070.1	lncRNA	lncRNA	lncRNA	lncRNA	14	92	2	1.37921	1.44432	1.50943	0.0316416	0.0307245	0.143385	0.13151
chr6	37835707	37835807	2857192	0	+	0.34	(0.32,0.35]	chr6	270225	153	INTRON	INTRON	ZFAND3	ENSG00000156639.12	ENST00000287218.9:ENST00000373391.6:ENST00000474522.5	protein_coding	protein_coding	protein_coding	protein_coding	9	71	2	1.42542	1.444075	1.46273	0.0718205	0.0451962	0.187046	0.163755
chr11	86067850	86067950	5014831	0	-	0.4	(0.378,0.408]	chr11	473022	359	INTRON	INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000630913.2:ENST00000528398.5:ENST00000356360.9:ENST00000534412.5:ENST00000531558.1:ENST00000531930.5:ENST00000532041.5:ENST00000525162.5:ENST00000528256.1:ENST00000528411.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	27	163	2	1.00999	1.4438	1.87761	0.0482294	0.00657764	0.171852	0.0701901
chr11	61963987	61964086	4958163	0	-	0.353535	(0.35,0.378]	chr11	466152	37	INTRON	INTRON	FTH1	ENSG00000167996.16	ENST00000529191.5:ENST00000529631.5:ENST00000530019.5	protein_coding	protein_coding	protein_coding	protein_coding	14	102	2	1.2369	1.44374	1.65058	0.0511272	0.0209998	0.176696	0.112251
chr1	108464	108563	352461	0	-	0.424242	(0.408,0.44]	chr1	40774	159	INTRON	INTRON	ENSG00000238009	ENSG00000238009.6	ENST00000466430.5:ENST00000477740.5	lncRNA	lncRNA	lncRNA	lncRNA	18	125	2	1.42654	1.44372	1.4609	0.0340889	0.0180903	0.146815	0.107214
chr12	54241357	54241456	5330502	0	-	0.353535	(0.35,0.378]	chr12	508602	106	UTR3	UTR3:EXON_MRNA	CBX5	ENSG00000094916.16	ENST00000209875.9:ENST00000439541.6	protein_coding	protein_coding	protein_coding	protein_coding	25	169	2	1.21444	1.443595	1.67275	0.0256897	0.012772	0.133676	0.0926667
chr7	12689334	12689430	3285864	0	+	0.302083	(0.28,0.32]	chr7	305191	6	UTR3	UTR3:EXON_MRNA	ARL4A	ENSG00000122644.13	ENST00000396663.2:ENST00000651779.1	protein_coding	protein_coding	protein_coding	protein_coding	12	106	2	1.31424	1.443545	1.57285	0.0580847	0.0308366	0.188651	0.13151
chr12	120200244	120200339	5433307	0	-	0.473684	(0.44,0.476]	chr12	519368	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPLP0	ENSG00000089157.16	ENST00000392514.9:ENST00000551150.5:ENST00000546989.5:ENST00000313104.9:ENST00000228306.8:ENST00000552461.5:ENST00000549098.5:ENST00000551258.5:ENST00000546990.5:ENST00000547211.5:ENST00000547475.5:ENST00000547173.5:ENST00000550856.5:ENST00000548568.5:ENST00000546564.5:ENST00000547191.5:ENST00000550296.5:ENST00000552902.5:ENST00000548495.5:ENST00000550423.5:ENST00000551914.1:ENST00000548551.5:ENST00000549242.1:ENST00000551783.1:ENST00000551336.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	19	135	2	1.40212	1.443215	1.48431	0.0524678	0.0117599	0.178047	0.0894475
chr4	39764382	39764482	1953657	0	+	0.32	(0.28,0.32]	chr4	195650	32	INTRON	INTRON	UBE2K	ENSG00000078140.14	ENST00000510934.5:ENST00000261427.10:ENST00000438068.6:ENST00000513231.5:ENST00000503368.5:ENST00000445950.2:ENST00000510719.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	18	154	2	1.21977	1.4431	1.66643	0.0732687	0.00733533	0.189963	0.0764516
chr6	37821815	37821915	2857053	0	+	0.46	(0.44,0.476]	chr6	270225	14	INTRON	INTRON	ZFAND3	ENSG00000156639.12	ENST00000287218.9:ENST00000373391.6:ENST00000474522.5	protein_coding	protein_coding	protein_coding	protein_coding	20	121	2	1.00561	1.4430649999999998	1.88052	0.0633646	0.00808369	0.197802	0.0766625
chr14	21264349	21264446	5835117	0	-	0.298969	(0.28,0.32]	chr14	554468	19	UTR5	UTR5:EXON_MRNA:INTRON	HNRNPC	ENSG00000092199.19	ENST00000336053.10:ENST00000553300.6:ENST00000554969.5:ENST00000556142.5:ENST00000554455.5:ENST00000430246.6:ENST00000553753.5:ENST00000555309.5:ENST00000555914.5:ENST00000557442.5:ENST00000556628.5:ENST00000556513.5:ENST00000555883.5:ENST00000557201.5:ENST00000420743.6:ENST00000554539.5:ENST00000554383.5:ENST00000555215.5:ENST00000555137.5:ENST00000554891.5:ENST00000556226.5:ENST00000555176.5:ENST00000553614.5:ENST00000557336.1:ENST00000557768.1:ENST00000557033.1:ENST00000555127.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	16	136	2	1.15086	1.4425249999999998	1.73419	0.0720054	0.0111234	0.187341	0.0934137
chr22	49649028	49649128	7602578	0	-	0.43	(0.408,0.44]	chr22	778594	216	INTRON	INTRON	MIR3667HG	ENSG00000188511.13	ENST00000414287.5:ENST00000416411.1:ENST00000689875.1:ENST00000400023.5:ENST00000405854.5	lncRNA	lncRNA	lncRNA	lncRNA	19	126	2	1.23423	1.44235	1.65047	0.0440502	0.00868029	0.149778	0.0842798
chr2	55044015	55044115	1121345	0	-	0.55	(0.515,0.57]	chr2	120163	154	INTRON	INTRON	RTN4	ENSG00000115310.19	ENST00000404909.5:ENST00000394611.6:ENST00000317610.11:ENST00000357732.8:ENST00000337526.11:ENST00000357376.7:ENST00000405240.5:ENST00000438462.1:ENST00000427710.5	protein_coding	protein_coding	protein_coding	protein_coding	25	140	2	1.27124	1.442315	1.61339	0.0395991	0.00360382	0.143072	0.0552771
chr3	195275640	195275740	1894206	0	-	0.45	(0.44,0.476]	chr3	189532	10	UTR3	UTR3:EXON_MRNA	ACAP2	ENSG00000114331.16	ENST00000326793.11	protein_coding	protein_coding	protein_coding	protein_coding	15	99	2	1.35523	1.442145	1.52906	0.0430576	0.017448	0.148082	0.112716
chr17	20870179	20870279	6576080	0	+	0.49	(0.476,0.515]	chr17	639372	11	INTRON	INTRON	CCDC144NL-AS1	ENSG00000233098.10	ENST00000577537.5:ENST00000692759.1:ENST00000443508.8:ENST00000692309.1:ENST00000439794.6:ENST00000417232.6:ENST00000583962.2:ENST00000582324.5:ENST00000577860.5	lncRNA	lncRNA	lncRNA	lncRNA	21	136	2	1.32298	1.4420899999999999	1.5612	0.0230185	0.014821	0.126415	0.0987724
chr3	47655315	47655414	1683783	0	-	0.494949	(0.476,0.515]	chr3	171996	162	INTRON	INTRON	SMARCC1	ENSG00000173473.11	ENST00000254480.10:ENST00000425518.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	19	125	2	1.09927	1.442075	1.78488	0.057109	0.00708648	0.186375	0.0722138
chr15	92884560	92884656	6103522	0	+	0.302083	(0.28,0.32]	chr15	581358	3	EXON_MRNA	EXON_MRNA:INTRON	CHASERR:ENSG00000279765	ENSG00000272888.8:ENSG00000279765.3	ENST00000653163.1:ENST00000557682.6:ENST00000556895.5:ENST00000554669.6:ENST00000554894.5:ENST00000557147.1:ENST00000629685.2:ENST00000554133.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	30	228	2	1.15541	1.441535	1.72766	0.0297585	0.0125598	0.142135	0.0926667
chr8	129523675	129523775	4060519	0	-	0.29	(0.28,0.32]	chr8	369648	131	INTRON	INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1:ENST00000676273.1:ENST00000667643.1:ENST00000668791.1:ENST00000663716.1:ENST00000663572.1:ENST00000676148.1:ENST00000667962.1:ENST00000674877.1:ENST00000675316.1:ENST00000674656.1:ENST00000446592.7:ENST00000667341.1:ENST00000675186.1:ENST00000652971.1:ENST00000661447.1:ENST00000674863.1:ENST00000675498.1:ENST00000675527.1:ENST00000676108.1:ENST00000657647.1:ENST00000675589.1:ENST00000675913.1:ENST00000675109.1:ENST00000671632.1:ENST00000671311.1:ENST00000676099.1:ENST00000660652.1:ENST00000675522.1:ENST00000675183.1:ENST00000658861.1:ENST00000663991.1:ENST00000675044.1:ENST00000675435.1:ENST00000674639.1:ENST00000676069.1:ENST00000675532.1:ENST00000674762.1:ENST00000523151.6:ENST00000675948.1:ENST00000665364.1:ENST00000657251.1:ENST00000675166.1:ENST00000674883.1:ENST00000675867.1:ENST00000674580.1:ENST00000675393.1:ENST00000520048.1:ENST00000674906.1:ENST00000676030.1:ENST00000670588.1:ENST00000675072.1:ENST00000664936.1:ENST00000652914.1:ENST00000657069.1	lncRNA	lncRNA	lncRNA	lncRNA	17	146	2	1.28899	1.44142	1.59385	0.0438975	0.0190086	0.149302	0.118802
chr15	92902594	92902691	6103712	0	+	0.319588	(0.28,0.32]	chr15	581390	5	UTR3	UTR3:EXON_MRNA:INTRON	ENSG00000279765:CHD2	ENSG00000279765.3:ENSG00000173575.22	ENST00000629685.2:ENST00000630790.1:ENST00000626874.2:ENST00000394196.9:ENST00000635856.1:ENST00000420239.7:ENST00000628375.2:ENST00000629346.2:ENST00000625990.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	12	102	2	1.3645	1.4413550000000002	1.51821	0.0687143	0.0249506	0.184298	0.132531
chrX	66166161	66166260	7672694	0	+	0.353535	(0.35,0.378]	chrX	785246	13	INTRON	INTRON	HEPH	ENSG00000089472.18	ENST00000519389.6:ENST00000683049.1:ENST00000458621.6:ENST00000684042.1:ENST00000343002.7:ENST00000336279.9:ENST00000429547.6:ENST00000441993.7:ENST00000419594.6:ENST00000682362.1:ENST00000425114.2:ENST00000682927.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	19	140	2	1.26869	1.441165	1.61364	0.0359577	0.013623	0.152355	0.0949306
chr20	481260	481360	7303323	0	-	0.36	(0.35,0.378]	chr20	743483	26	UTR3	UTR3:EXON_MRNA:INTRON	CSNK2A1	ENSG00000101266.19	ENST00000646561.1:ENST00000217244.9:ENST00000643660.1:ENST00000645623.1:ENST00000619801.5:ENST00000400227.8:ENST00000349736.10:ENST00000644170.1:ENST00000643700.1:ENST00000645910.1:ENST00000645840.1:ENST00000646305.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	66	2	1.43253	1.440935	1.44934	0.0658369	0.0486238	0.181518	0.173047
chr8	105321950	105322050	3837274	0	+	0.36	(0.35,0.378]	chr8	354033	18	INTRON	INTRON	ZFPM2	ENSG00000169946.14	ENST00000518180.1:ENST00000407775.7:ENST00000520492.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	16	108	2	1.13507	1.4408750000000001	1.74668	0.0518195	0.0198631	0.176696	0.109608
chr7	73482938	73483037	3554701	0	-	0.484848	(0.476,0.515]	chr7	330783	40	INTRON	INTRON	BAZ1B	ENSG00000009954.11	ENST00000339594.9:ENST00000404251.1	protein_coding	protein_coding	protein_coding	protein_coding	11	73	2	1.28655	1.44074	1.59493	0.075974	0.0213255	0.194842	0.123504
chr4	55413419	55413517	1960768	0	+	0.44898	(0.44,0.476]	chr4	196561	8	INTRON	INTRON	TMEM165	ENSG00000134851.13	ENST00000381334.10:ENST00000506198.5:ENST00000508404.5:ENST00000511710.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	12	80	2	1.38315	1.4405800000000002	1.49801	0.0472692	0.0300375	0.152795	0.142135
chr2	167879964	167880064	1258601	0	-	0.47	(0.44,0.476]	chr2	133334	96	INTRON	INTRON	B3GALT1-AS1	ENSG00000235335.3	ENST00000430546.2:ENST00000657553.1:ENST00000670221.1:ENST00000436982.2	lncRNA	lncRNA	lncRNA	lncRNA	19	124	2	1.18977	1.44013	1.69049	0.0462453	0.00892921	0.150603	0.0849778
chrX	71410442	71410542	7678688	0	+	0.42	(0.408,0.44]	chrX	786269	19	INTRON	INTRON	TAF1	ENSG00000147133.17	ENST00000683202.1:ENST00000373790.9:ENST00000423759.6:ENST00000683782.1:ENST00000683668.1:ENST00000276072.9:ENST00000463163.5:ENST00000373775.8:ENST00000485087.6:ENST00000437147.8:ENST00000683358.1:ENST00000682124.1:ENST00000461764.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	21	139	2	1.23423	1.4401	1.64597	0.0440502	0.00634161	0.149778	0.0723103
chr11	3754406	3754505	4894731	0	-	0.252525	[0,0.28]	chr11	458876	6	INTRON	INTRON	NUP98	ENSG00000110713.17	ENST00000359171.8:ENST00000324932.12:ENST00000650171.1:ENST00000355260.7:ENST00000397004.8:ENST00000397007.8:ENST00000527104.5:ENST00000529379.1:ENST00000397013.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	93	2	1.32273	1.44007	1.55741	0.0792968	0.0508852	0.199711	0.176224
chr17	50719564	50719648	6626965	0	+	0.642857	(0.57,1]	chr17	647172	1	UTR5	UTR5:EXON_MRNA	LUC7L3	ENSG00000108848.16	ENST00000625349.2:ENST00000508045.5:ENST00000508218.5:ENST00000509335.5:ENST00000506686.5:ENST00000393227.6:ENST00000504563.6:ENST00000505658.6:ENST00000240304.5:ENST00000508482.5:ENST00000505619.5:ENST00000510984.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	22	72	2	1.10463	1.439905	1.77518	0.0446025	0.00402813	0.149888	0.0578376
chr11	65431460	65431560	4805857	0	+	0.43	(0.408,0.44]	chr11	446554	88	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	161	1018	2	1.20864	1.4396550000000001	1.67067	0.00800884	0.00133027	0.0801735	0.0334198
chr17	27296199	27296296	6580552	0	+	0.350515	(0.35,0.378]	chr17	639598	14	INTRON	INTRON	WSB1	ENSG00000109046.15	ENST00000581440.5:ENST00000578312.5:ENST00000583742.1:ENST00000467843.6:ENST00000579733.5:ENST00000583193.5:ENST00000262394.7:ENST00000427287.6:ENST00000581185.5:ENST00000584354.1:ENST00000583786.5:ENST00000581089.1:ENST00000348811.6:ENST00000582208.1:ENST00000584114.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	23	156	2	1.34676	1.439125	1.53149	0.0256206	0.0157311	0.120376	0.109464
chr22	21796136	21796234	7560668	0	-	0.5	(0.476,0.515]	chr22	773370	70	INTRON	INTRON	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	20	131	2	1.17331	1.43899	1.70467	0.0527903	0.0057054	0.161487	0.0681165
chr1	8862111	8862203	374115	0	-	0.434783	(0.408,0.44]	chr1	43581	3	INTRON	INTRON	ENO1	ENSG00000074800.16	ENST00000234590.10:ENST00000647408.1:ENST00000464920.2:ENST00000646370.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	15	104	2	1.28785	1.438925	1.59	0.0494367	0.0161174	0.174213	0.101453
chr7	139368793	139368893	3437677	0	+	0.43	(0.408,0.44]	chr7	320318	81	INTRON	INTRON	LUC7L2:FMC1-LUC7L2	ENSG00000146963.18:ENSG00000269955.2	ENST00000541170.7:ENST00000541515.3:ENST00000608368.5:ENST00000619796.4:ENST00000354926.9:ENST00000435096.1:ENST00000456182.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	16	99	2	1.14249	1.438905	1.73532	0.0491882	0.0194186	0.174117	0.109149
chr1	67422921	67423018	477554	0	-	0.340206	(0.32,0.35]	chr1	57477	24	INTRON	INTRON	SERBP1	ENSG00000142864.15	ENST00000370994.8:ENST00000361219.11:ENST00000370995.6:ENST00000370990.5:ENST00000493607.1:ENST00000484880.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	15	123	2	1.25832	1.43887	1.61942	0.0563972	0.0168104	0.184423	0.10348
chr22	16605396	16605495	7473394	0	+	0.272727	[0,0.28]	chr22	761972	28	INTRON	INTRON	TPTEP1:ENSG00000283633	ENSG00000100181.22:ENSG00000283633.1	ENST00000558085.6:ENST00000400593.6:ENST00000592918.5:ENST00000592107.5:ENST00000426585.5:ENST00000591299.1	lncRNA	lncRNA	lncRNA:transcribed_unprocessed_pseudogene	lncRNA:processed_transcript	30	287	2	1.28475	1.4388450000000002	1.59294	0.0239682	0.0157746	0.129316	0.101453
chr19	57844156	57844255	7105972	0	+	0.474747	(0.44,0.476]	chr19	713218	17	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	ENSG00000268750:ZNF587B	ENSG00000268750.7:ENSG00000269343.9	ENST00000597134.5:ENST00000596498.2:ENST00000593873.6:ENST00000603271.1:ENST00000598031.1:ENST00000442832.8:ENST00000594901.2:ENST00000604231.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	60	2	1.40212	1.438225	1.47433	0.0595438	0.0524678	0.178047	0.16883600000000001
chr1	145993189	145993283	541075	0	-	0.382979	(0.378,0.408]	chr1	63465	9	UTR3	UTR3:EXON_MRNA	TXNIP	ENSG00000265972.6	ENST00000582401.6	protein_coding	protein_coding	protein_coding	protein_coding	37	212	2	1.13867	1.43819	1.73771	0.0214751	0.011556	0.123836	0.0889104
chr15	41304035	41304135	6004589	0	+	0.36	(0.35,0.378]	chr15	571273	61	EXON_LNCRNA	EXON_LNCRNA:INTRON	OIP5-AS1	ENSG00000247556.6	ENST00000500949.6:ENST00000501665.2	lncRNA	lncRNA	lncRNA	lncRNA	26	182	2	1.37692	1.4380549999999999	1.49919	0.0184435	0.0138011	0.108861	0.10247
chr19	8461268	8461368	7010927	0	+	0.26	[0,0.28]	chr19	696143	53	INTRON	INTRON	HNRNPM	ENSG00000099783.12	ENST00000348943.7:ENST00000597813.5:ENST00000600092.5:ENST00000325495.9:ENST00000600806.5:ENST00000620401.4:ENST00000594907.5:ENST00000596984.5:ENST00000601645.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	117	2	1.40589	1.4380350000000002	1.47018	0.0666282	0.032043	0.182954	0.145026
chr6	17650662	17650758	3065639	0	-	0.3125	(0.28,0.32]	chr6	284818	10	INTRON	INTRON	NUP153	ENSG00000124789.12	ENST00000613258.4:ENST00000537253.5:ENST00000262077.3	protein_coding	protein_coding	protein_coding	protein_coding	9	74	2	1.31424	1.4377900000000001	1.56134	0.0740624	0.0580847	0.191153	0.188651
chr12	122518538	122518638	5442166	0	-	0.46	(0.44,0.476]	chr12	520575	3	SS5_PROX	SS5_PROX:INTRON	RSRC2	ENSG00000111011.18	ENST00000331738.12:ENST00000532695.5:ENST00000433877.6:ENST00000527173.6:ENST00000525335.6:ENST00000344591.8:ENST00000528263.1:ENST00000527399.3:ENST00000527796.6:ENST00000526560.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	80	2	1.1509	1.4375550000000001	1.72421	0.0583814	0.0285163	0.189306	0.12666
chr1	205742791	205742890	623816	0	-	0.353535	(0.35,0.378]	chr1	74198	116	INTRON	INTRON	NUCKS1	ENSG00000069275.13	ENST00000367142.5	protein_coding	protein_coding	protein_coding	protein_coding	17	121	2	1.34308	1.4372850000000001	1.53149	0.0274048	0.0256206	0.136498	0.120376
chr9	135933815	135933915	4372280	0	-	0.46	(0.44,0.476]	chr9	402501	3	SS3_PROX	SS3_PROX:INTRON	UBAC1	ENSG00000130560.9	ENST00000371756.4:ENST00000489050.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	21	134	2	1.01577	1.437135	1.8585	0.0708219	0.00415914	0.184571	0.0590902
chr11	93741408	93741495	5017335	0	-	0.597701	(0.57,1]	chr11	473311	2	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	TAF1D	ENSG00000166012.17	ENST00000323981.6:ENST00000526015.5:ENST00000527169.5:ENST00000448108.7:ENST00000534770.1:ENST00000532235.1:ENST00000532455.1:ENST00000529508.1:ENST00000527690.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	25	86	2	1.1658	1.437115	1.70843	0.0393144	0.00255662	0.161534	0.0449793
chr8	22609058	22609157	3714400	0	+	0.525253	(0.515,0.57]	chr8	345003	6	INTRON	INTRON	CCAR2	ENSG00000158941.17	ENST00000308511.9:ENST00000389279.7:ENST00000520861.5	protein_coding	protein_coding	protein_coding	protein_coding	16	87	2	1.03423	1.43688	1.83953	0.0771094	0.00755489	0.196285	0.0773151
chr8	26309015	26309115	3716271	0	+	0.48	(0.476,0.515]	chr8	345372	40	INTRON	INTRON	PPP2R2A	ENSG00000221914.11	ENST00000380737.8:ENST00000520329.5:ENST00000518254.5:ENST00000524169.5:ENST00000518397.5:ENST00000522535.5:ENST00000665949.1:ENST00000522150.5:ENST00000523473.5:ENST00000521095.5:ENST00000660435.1:ENST00000523925.5:ENST00000524099.5:ENST00000315985.7:ENST00000519636.5:ENST00000522482.5:ENST00000521557.5:ENST00000519439.5:ENST00000521484.5:ENST00000523964.5:ENST00000667651.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	63	2	1.34709	1.43662	1.52615	0.0739267	0.0408438	0.190914	0.161534
chr11	3751321	3751421	4894700	0	-	0.37	(0.35,0.378]	chr11	458870	63	INTRON	INTRON	NUP98	ENSG00000110713.17	ENST00000359171.8:ENST00000324932.12:ENST00000650171.1:ENST00000355260.7:ENST00000397004.8:ENST00000397007.8:ENST00000527104.5:ENST00000529379.1:ENST00000397013.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	80	2	1.33846	1.436315	1.53417	0.0687435	0.0271808	0.184298	0.136494
chr6	147210865	147210965	2988772	0	+	0.36	(0.35,0.378]	chr6	280001	44	INTRON	INTRON	STXBP5	ENSG00000164506.15	ENST00000321680.11:ENST00000367481.7:ENST00000546097.5:ENST00000367480.7	protein_coding	protein_coding	protein_coding	protein_coding	15	107	2	1.08501	1.4362	1.78739	0.0798289	0.0104819	0.19996	0.0905779
chr7	76554520	76554620	3340413	0	+	0.34	(0.32,0.35]	chr7	311170	26	INTRON	INTRON	ENSG00000205485	ENSG00000205485.13	ENST00000418663.5:ENST00000450661.1:ENST00000423084.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	22	170	2	1.36835	1.43586	1.50337	0.0209319	0.0195404	0.122348	0.109483
chr4	70976451	70976548	1971251	0	+	0.340206	(0.32,0.35]	chr4	197600	13	EXON_MRNA	EXON_MRNA:INTRON	MOB1B	ENSG00000173542.9	ENST00000509041.5:ENST00000309395.7:ENST00000396051.2:ENST00000511449.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	12	93	2	1.25832	1.4358300000000002	1.61334	0.0563972	0.0322135	0.184423	0.132553
chr1	30949726	30949826	411712	0	-	0.39	(0.378,0.408]	chr1	49634	2	SS5_PROX	SS5_PROX:INTRON	PUM1	ENSG00000134644.16	ENST00000426105.7:ENST00000373747.7:ENST00000257075.9:ENST00000424085.6:ENST00000525843.5:ENST00000440538.6:ENST00000498419.5:ENST00000373741.8:ENST00000373742.6:ENST00000529846.5:ENST00000525997.1:ENST00000527498.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	13	80	2	1.23643	1.435505	1.63458	0.0573057	0.039501	0.167723	0.161534
chr4	55422816	55422915	1960868	0	+	0.474747	(0.44,0.476]	chr4	196577	43	INTRON	INTRON	TMEM165	ENSG00000134851.13	ENST00000381334.10:ENST00000506198.5:ENST00000508404.5:ENST00000514904.5:ENST00000508561.5:ENST00000608091.1:ENST00000509575.1:ENST00000506103.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	71	2	1.39666	1.435495	1.47433	0.0595438	0.0344316	0.16883600000000001	0.147767
chr5	54060366	54060466	2618409	0	-	0.47	(0.44,0.476]	chr5	248837	122	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	31	201	2	1.37308	1.4354200000000001	1.49776	0.0122817	0.0111045	0.0970106	0.0876025
chr12	124779685	124779785	5445723	0	-	0.71	(0.57,1]	chr12	521214	7	INTRON	INTRON	SCARB1	ENSG00000073060.17	ENST00000339570.9:ENST00000261693.11:ENST00000679605.1:ENST00000681686.1:ENST00000680926.1:ENST00000680556.1:ENST00000680982.1:ENST00000680596.1:ENST00000681555.1:ENST00000681788.1:ENST00000415380.6:ENST00000681117.1:ENST00000681499.1:ENST00000545305.1:ENST00000538291.5:ENST00000546215.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	23	74	2	1.35285	1.43498	1.51711	0.0168881	0.012944	0.103756	0.0991015
chr3	152297607	152297707	1535271	0	+	0.47	(0.44,0.476]	chr3	159981	275	INTRON	INTRON	MBNL1	ENSG00000152601.18	ENST00000477171.1:ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000461436.1:ENST00000495875.6:ENST00000324210.10:ENST00000493459.5:ENST00000459747.1:ENST00000460591.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	77	2	1.42812	1.4345750000000002	1.44103	0.0673866	0.0244867	0.183355	0.131869
chr1	148750956	148751053	213801	0	+	0.484536	(0.476,0.515]	chr1	23730	16	UTR3	UTR3:EXON_MRNA	NUDT4B	ENSG00000177144.8	ENST00000322209.5	protein_coding	protein_coding	protein_coding	protein_coding	10	65	2	1.32251	1.4344000000000001	1.54629	0.0533705	0.0484352	0.179876	0.153635
chr2	55032818	55032918	1121233	0	-	0.46	(0.44,0.476]	chr2	120163	42	INTRON	INTRON	RTN4	ENSG00000115310.19	ENST00000404909.5:ENST00000394611.6:ENST00000317610.11:ENST00000357732.8:ENST00000337526.11:ENST00000357376.7:ENST00000405240.5:ENST00000438462.1:ENST00000427710.5	protein_coding	protein_coding	protein_coding	protein_coding	19	121	2	1.40129	1.43407	1.46685	0.0297947	0.0166154	0.129138	0.110511
chr16	21874064	21874163	6461984	0	-	0.494949	(0.476,0.515]	chr16	623467	79	INTRON	INTRON	NPIPB4	ENSG00000185864.18	ENST00000543449.1:ENST00000538859.1	protein_coding	processed_transcript	protein_coding	processed_transcript	14	91	2	1.41081	1.434025	1.45724	0.0430655	0.0231273	0.148082	0.126939
chr8	23566454	23566544	3715475	0	+	0.566667	(0.515,0.57]	chr8	345232	2	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	SLC25A37	ENSG00000147454.14	ENST00000519973.6:ENST00000290075.10:ENST00000417331.6:ENST00000518881.5:ENST00000520654.1:ENST00000523930.1:ENST00000523883.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	67	364	2	1.38876	1.43323	1.4777	0.0069017	0.00256497	0.0718118	0.0466761
chr19	10316975	10317070	7135333	0	-	0.389474	(0.378,0.408]	chr19	719323	9	UTR3	UTR3:EXON_MRNA	RAVER1	ENSG00000161847.14	ENST00000617231.5:ENST00000592208.5:ENST00000611074.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	35	236	2	1.37516	1.4330699999999998	1.49098	0.0171167	0.00631126	0.104099	0.0722266
chr16	58163171	58163269	6494828	0	-	0.397959	(0.378,0.408]	chr16	628311	38	EXON_MRNA	EXON_MRNA:INTRON	CSNK2A2	ENSG00000070770.10	ENST00000262506.8:ENST00000565188.2:ENST00000566813.5:ENST00000676463.1:ENST00000677823.1:ENST00000567730.6:ENST00000563307.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	38	257	2	1.26868	1.432985	1.59729	0.022513	0.0036784	0.117171	0.0561162
chr10	124785348	124785448	4712482	0	-	0.29	(0.28,0.32]	chr10	434817	102	INTRON	INTRON	EEF1AKMT2	ENSG00000203791.15	ENST00000652548.1:ENST00000466270.5:ENST00000368836.7:ENST00000464099.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	91	2	1.35386	1.432865	1.51187	0.0598267	0.0432643	0.169278	0.162255
chr12	53458573	53458672	5142954	0	+	0.343434	(0.32,0.35]	chr12	485394	22	INTRON	INTRON	PCBP2	ENSG00000197111.16	ENST00000546463.6:ENST00000437231.5:ENST00000447282.5:ENST00000359282.9:ENST00000549863.5:ENST00000359462.9:ENST00000550520.6:ENST00000552296.6:ENST00000551104.5:ENST00000552819.5:ENST00000455667.7:ENST00000439930.7:ENST00000548933.5:ENST00000546652.6:ENST00000562264.5:ENST00000548190.1:ENST00000550585.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	99	2	1.1708	1.4327100000000002	1.69462	0.0641583	0.0249051	0.199375	0.12011
chr7	120989525	120989621	3393643	0	+	0.427083	(0.408,0.44]	chr7	317663	6	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	CPED1	ENSG00000106034.18	ENST00000340646.9:ENST00000310396.10:ENST00000428526.5:ENST00000495036.5:ENST00000450913.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	79	2	1.39614	1.43188	1.46762	0.0567929	0.0267854	0.167723	0.134871
chr2	32522021	32522116	732501	0	+	0.336842	(0.32,0.35]	chr2	84596	2	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	BIRC6:ENSG00000276334	ENSG00000115760.15:ENSG00000276334.1	ENST00000421745.7:ENST00000648282.1:ENST00000610331.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	15	110	2	1.19531	1.431675	1.66804	0.0477015	0.0271264	0.170212	0.123904
chr11	65503242	65503341	4806176	0	+	0.424242	(0.408,0.44]	chr11	446569	57	EXON_LNCRNA	EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MALAT1	ENSG00000251562.9	ENST00000619449.2:ENST00000534336.1:ENST00000508832.2:ENST00000616527.4:ENST00000618925.1	lncRNA	lncRNA	lncRNA	lncRNA	1757	10828	2	1.30208	1.430885	1.55969	0.00334555	0.00146507	0.0530215	0.0346843
chr1	227317082	227317182	651707	0	-	0.51	(0.476,0.515]	chr1	77114	1	CDS_START	CDS_START:CDS:EXON_MRNA	CDC42BPA	ENSG00000143776.20	ENST00000366766.8:ENST00000366769.7:ENST00000334218.9:ENST00000366767.7:ENST00000366764.8	protein_coding	protein_coding	protein_coding	protein_coding	13	85	2	1.41803	1.43073	1.44343	0.0388521	0.0320614	0.145026	0.143072
chr12	132824918	132825012	5450183	0	-	0.478723	(0.476,0.515]	chr12	522114	1	UTR5	UTR5:EXON_MRNA:INTRON	GOLGA3:CHFR	ENSG00000090615.16:ENSG00000072609.18	ENST00000204726.9:ENST00000450791.8:ENST00000688114.1:ENST00000691696.1:ENST00000691636.1:ENST00000690897.1:ENST00000456883.7:ENST00000545875.4:ENST00000688251.1:ENST00000686751.1:ENST00000685580.1:ENST00000687165.1:ENST00000692384.1:ENST00000685120.1:ENST00000689813.1:ENST00000693112.1:ENST00000685450.1:ENST00000534967.2:ENST00000537317.2:ENST00000690178.1:ENST00000652603.2:ENST00000541341.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	83	2	1.26748	1.430565	1.59365	0.0453667	0.0306944	0.164236	0.13151
chr4	126620290	126620390	2236912	0	-	0.32	(0.28,0.32]	chr4	219023	1548	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	12	98	2	1.38319	1.43047	1.47775	0.0653002	0.0336194	0.180158	0.146709
chr1	11999470	11999563	26638	0	+	0.354839	(0.35,0.378]	chr1	3119	5	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	MFN2	ENSG00000116688.18	ENST00000444836.5:ENST00000674817.1:ENST00000675053.1:ENST00000675298.1:ENST00000675817.1:ENST00000675194.1:ENST00000674548.1:ENST00000675959.1:ENST00000675872.1:ENST00000676426.1:ENST00000674706.1:ENST00000674658.1:ENST00000674910.1:ENST00000675231.1:ENST00000235329.10:ENST00000676293.1:ENST00000675919.1:ENST00000675987.1:ENST00000675512.1:ENST00000675113.1:ENST00000675483.1:ENST00000675528.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	17	124	2	1.28277	1.430445	1.57812	0.0385043	0.0182276	0.159277	0.107842
chr19	19506659	19506758	7036374	0	+	0.434343	(0.408,0.44]	chr19	701523	13	UTR3	UTR3:EXON_MRNA	GATAD2A	ENSG00000167491.18	ENST00000360315.7:ENST00000683918.1:ENST00000404158.5:ENST00000358713.7:ENST00000418032.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	67	2	1.31757	1.4301499999999998	1.54273	0.0705974	0.0337312	0.184528	0.146709
chr1	32365029	32365129	414886	0	-	0.56	(0.515,0.57]	chr1	50029	5	UTR3	UTR3:EXON_MRNA	BSDC1	ENSG00000160058.19	ENST00000455895.7:ENST00000444377.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	21	115	2	1.10849	1.42954	1.75059	0.0517318	0.00499963	0.159306	0.0646039
chr7	131488618	131488717	3418077	0	+	0.40404	(0.378,0.408]	chr7	319295	10	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	MKLN1	ENSG00000128585.18	ENST00000352689.11:ENST00000498778.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	14	96	2	1.2095	1.4292799999999999	1.64906	0.0550293	0.0203406	0.183821	0.110499
chr1	29061283	29061383	60442	0	+	0.57	(0.515,0.57]	chr1	7726	4	INTRON	INTRON	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000647918.1:ENST00000646800.1:ENST00000644342.1:ENST00000646189.1:ENST00000482464.6:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000646260.1:ENST00000373798.5:ENST00000644600.1:ENST00000649674.1:ENST00000643173.1:ENST00000343067.9:ENST00000644780.1:ENST00000650265.1:ENST00000648181.1:ENST00000643604.1:ENST00000648891.1:ENST00000373797.2:ENST00000349460.9:ENST00000645184.1:ENST00000645111.1:ENST00000643302.1:ENST00000642643.1:ENST00000636666.1:ENST00000644848.1:ENST00000644470.1:ENST00000646871.1:ENST00000488277.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	32	174	2	1.38175	1.42916	1.47657	0.0168053	0.00575926	0.103458	0.068265
chr22	49648829	49648929	7602576	0	-	0.65	(0.57,1]	chr22	778594	214	INTRON	INTRON	MIR3667HG	ENSG00000188511.13	ENST00000414287.5:ENST00000416411.1:ENST00000689875.1:ENST00000400023.5:ENST00000405854.5	lncRNA	lncRNA	lncRNA	lncRNA	11	36	2	1.21403	1.42909	1.64415	0.0635872	0.0342575	0.198385	0.135558
chr1	29172502	29172602	410350	0	-	0.58	(0.57,1]	chr1	49420	40	EXON_MRNA	EXON_MRNA:INTRON	SRSF4	ENSG00000116350.18	ENST00000373795.7:ENST00000691479.1:ENST00000634348.1:ENST00000466448.4:ENST00000605204.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	15	50	2	1.20176	1.428865	1.65597	0.0551275	0.0122299	0.165463	0.0969406
chr5	32173145	32173245	2597504	0	-	0.31	(0.28,0.32]	chr5	246744	289	INTRON	INTRON	GOLPH3	ENSG00000113384.14	ENST00000265070.7:ENST00000503610.5:ENST00000512668.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	10	84	2	1.4144	1.4286	1.4428	0.0712927	0.042942	0.185716	0.162255
chr19	28488957	28489057	7165984	0	-	0.46	(0.44,0.476]	chr19	724189	207	INTRON	INTRON	ENSG00000283403:ENSG00000267243	ENSG00000283403.1:ENSG00000267243.6	ENST00000592347.5:ENST00000593065.5	lncRNA	lncRNA	lncRNA	lncRNA	18	117	2	1.19201	1.42841	1.66481	0.0501504	0.00997526	0.156383	0.0879541
chr9	135942982	135943078	4372376	0	-	0.322917	(0.32,0.35]	chr9	402520	3	INTRON	INTRON	UBAC1	ENSG00000130560.9	ENST00000371756.4:ENST00000489050.5:ENST00000465873.5:ENST00000471163.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	24	168	2	1.05053	1.428345	1.80616	0.0497856	0.0101248	0.17488	0.0850389
chr4	39707074	39707174	1953081	0	+	0.46	(0.44,0.476]	chr4	195630	83	INTRON	INTRON	UBE2K	ENSG00000078140.14	ENST00000510934.5:ENST00000261427.10:ENST00000438068.6:ENST00000513231.5:ENST00000503368.5:ENST00000445950.2:ENST00000510719.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	12	78	2	1.36075	1.42803	1.49531	0.0421587	0.0389168	0.160783	0.148082
chr4	126649880	126649980	2237208	0	-	0.31	(0.28,0.32]	chr4	219023	1844	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	10	80	2	1.29464	1.4279899999999999	1.56134	0.0740624	0.0520475	0.191153	0.176923
chr10	68333230	68333329	4440770	0	+	0.464646	(0.44,0.476]	chr10	409480	6	INTRON	INTRON	HNRNPH3	ENSG00000096746.18	ENST00000469172.5:ENST00000461310.5:ENST00000265866.12:ENST00000480987.5:ENST00000486854.5:ENST00000467249.1:ENST00000354695.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	81	2	1.33659	1.427845	1.5191	0.0526241	0.0308657	0.160983	0.143385
chr17	46189219	46189319	6784833	0	-	0.36	(0.35,0.378]	chr17	669245	166	INTRON	INTRON	KANSL1	ENSG00000120071.15	ENST00000574590.6:ENST00000572904.6:ENST00000432791.7:ENST00000575318.6:ENST00000638275.1:ENST00000262419.10:ENST00000648792.1:ENST00000639150.1:ENST00000571698.2:ENST00000639375.1:ENST00000638269.1:ENST00000639356.1:ENST00000574655.6:ENST00000639099.1:ENST00000638902.1:ENST00000576739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	12	85	2	1.12173	1.4278149999999998	1.7339	0.0792732	0.0260366	0.199711	0.133676
chr7	117033884	117033983	3386796	0	+	0.424242	(0.408,0.44]	chr7	317151	105	INTRON	INTRON	ST7:ST7-OT4	ENSG00000004866.22:ENSG00000214188.9	ENST00000393446.6:ENST00000265437.9:ENST00000393451.7:ENST00000438863.5:ENST00000393449.5:ENST00000443979.5:ENST00000323984.8:ENST00000417919.5:ENST00000446490.5:ENST00000471110.5:ENST00000422922.5:ENST00000432298.5:ENST00000449366.5:ENST00000487459.5:ENST00000393443.5:ENST00000467538.5:ENST00000434836.5:ENST00000465133.5:ENST00000477742.5:ENST00000462544.1:ENST00000393444.7:ENST00000393447.8	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:nonsense_mediated_decay:lncRNA:processed_transcript	9	60	2	1.40374	1.42768	1.45162	0.0721345	0.0451203	0.187433	0.163518
chr6	159740711	159740809	3022524	0	+	0.55102	(0.515,0.57]	chr6	281903	13	INTRON	INTRON	WTAP	ENSG00000146457.16	ENST00000358372.8:ENST00000650096.1:ENST00000614346.4:ENST00000621533.5:ENST00000631126.2:ENST00000337387.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	15	79	2	1.13501	1.427575	1.72014	0.0537458	0.0185015	0.180803	0.108861
chr17	82466400	82466498	6692342	0	+	0.387755	(0.378,0.408]	chr17	654561	16	INTRON	INTRON	NARF	ENSG00000141562.19	ENST00000579198.5:ENST00000390006.8:ENST00000583181.5:ENST00000584192.5:ENST00000580296.5:ENST00000345415.11:ENST00000581202.5:ENST00000374611.9:ENST00000457415.7:ENST00000581795.5:ENST00000584411.5:ENST00000577812.5:ENST00000581743.5:ENST00000577432.5:ENST00000582907.5:ENST00000309794.16:ENST00000578082.5:ENST00000580748.1:ENST00000577410.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	56	375	2	1.33247	1.427105	1.52174	0.0135844	0.00323616	0.0949306	0.0524329
chr9	33111222	33111319	4243459	0	-	0.237113	[0,0.28]	chr9	390089	7	UTR3	UTR3:EXON_MRNA:INTRON	B4GALT1	ENSG00000086062.13	ENST00000535206.5:ENST00000379731.5	protein_coding	protein_coding	protein_coding	protein_coding	10	92	2	1.29661	1.4270100000000001	1.55741	0.0792968	0.0549931	0.199711	0.183705
chr22	16603708	16603807	7473377	0	+	0.40404	(0.378,0.408]	chr22	761972	11	INTRON	INTRON	TPTEP1:ENSG00000283633	ENSG00000100181.22:ENSG00000283633.1	ENST00000558085.6:ENST00000400593.6:ENST00000592918.5:ENST00000592107.5:ENST00000426585.5:ENST00000591299.1	lncRNA	lncRNA	lncRNA:transcribed_unprocessed_pseudogene	lncRNA:processed_transcript	28	189	2	1.42013	1.42694	1.43375	0.017662	0.0110712	0.10525	0.093001
chr5	98896025	98896125	2683726	0	-	0.48	(0.476,0.515]	chr5	253902	4	SS5_PROX	SS5_PROX:INTRON	CHD1	ENSG00000153922.11	ENST00000614616.5:ENST00000284049.7	protein_coding	protein_coding	protein_coding	protein_coding	11	66	2	1.16233	1.4268550000000002	1.69138	0.0635535	0.0481165	0.198287	0.153019
chr7	128305134	128305233	3634854	0	-	0.313131	(0.28,0.32]	chr7	337817	76	UTR3	UTR3:EXON_MRNA	RBM28	ENSG00000106344.8	ENST00000223073.6	protein_coding	protein_coding	protein_coding	protein_coding	18	156	2	1.29164	1.4268299999999998	1.56202	0.0401321	0.0197037	0.161534	0.109608
chr12	56639418	56639479	5335741	0	-	0.442623	(0.44,0.476]	chr12	510114	1	SS3_PROX	SS3_PROX:INTRON	ATP5F1B	ENSG00000110955.9	ENST00000262030.8:ENST00000548474.2:ENST00000547808.5:ENST00000547250.5:ENST00000551020.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	32	189	2	1.33369	1.426635	1.51958	0.0248162	0.00985481	0.12011	0.0877296
chr6	32163314	32163405	2844546	0	+	0.516484	(0.515,0.57]	chr6	268252	5	UTR3	UTR3:EXON_MRNA:INTRON	PPT2:PPT2-EGFL8	ENSG00000221988.13:ENSG00000258388.7	ENST00000361568.6:ENST00000395523.5:ENST00000428388.6:ENST00000585246.5:ENST00000375137.6:ENST00000375143.6:ENST00000324816.11:ENST00000422437.5:ENST00000453656.6:ENST00000583227.5:ENST00000479001.2:ENST00000421600.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	25	142	2	1.24548	1.42657	1.60766	0.0294148	0.00611058	0.142135	0.0676501
chr17	32371135	32371234	6598205	0	+	0.262626	[0,0.28]	chr17	641946	15	UTR3	UTR3:EXON_MRNA:INTRON	ZNF207	ENSG00000010244.19	ENST00000394670.9:ENST00000577908.5:ENST00000581531.5:ENST00000579810.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	21	198	2	1.32029	1.4262299999999999	1.53217	0.0288766	0.0277295	0.137011	0.1274
chr8	37859213	37859313	3935534	0	-	0.38	(0.378,0.408]	chr8	360548	7	UTR3	UTR3:EXON_MRNA	RAB11FIP1	ENSG00000156675.16	ENST00000330843.9:ENST00000287263.8	protein_coding	protein_coding	protein_coding	protein_coding	17	111	2	1.10295	1.425995	1.74904	0.056699	0.0141676	0.185107	0.0959618
chr1	246055367	246055467	676185	0	-	0.35	(0.32,0.35]	chr1	79717	19	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000391836.3:ENST00000464398.1:ENST00000453676.5:ENST00000462422.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	79	2	1.30436	1.425885	1.54741	0.0642897	0.0473733	0.178531	0.169265
chr16	71924101	71924201	6386912	0	+	0.43	(0.408,0.44]	chr16	614133	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:INTRON	IST1	ENSG00000182149.21	ENST00000544564.5:ENST00000541571.6:ENST00000535424.5:ENST00000606369.5:ENST00000378799.11:ENST00000538565.5:ENST00000329908.12:ENST00000538850.5:ENST00000378798.9:ENST00000439924.6:ENST00000456820.2:ENST00000536027.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	17	109	2	1.39095	1.4258250000000001	1.4607	0.046481	0.0145171	0.151299	0.105493
chr1	220009672	220009769	638810	0	-	0.329897	(0.32,0.35]	chr1	75258	20	INTRON	INTRON	EPRS1	ENSG00000136628.18	ENST00000366923.8:ENST00000609181.5:ENST00000477030.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	14	105	2	1.41592	1.4257650000000002	1.43561	0.0543363	0.0246865	0.164972	0.131869
chr10	68756732	68756793	4442639	0	+	0.377049	(0.35,0.378]	chr10	409666	1	SS5_PROX	SS5_PROX:INTRON	CCAR1	ENSG00000060339.14	ENST00000630771.2:ENST00000543719.5:ENST00000541012.5:ENST00000265872.11:ENST00000539539.5:ENST00000543229.5:ENST00000536012.5:ENST00000543225.5:ENST00000540210.5:ENST00000483264.1:ENST00000479143.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	14	101	2	1.33473	1.42523	1.51573	0.0484067	0.0231884	0.153635	0.127151
chr1	30989403	30989502	412126	0	-	0.535354	(0.515,0.57]	chr1	49701	74	INTRON	INTRON	PUM1	ENSG00000134644.16	ENST00000426105.7:ENST00000373747.7:ENST00000257075.9:ENST00000424085.6:ENST00000525843.5:ENST00000440538.6:ENST00000498419.5:ENST00000373741.8:ENST00000373742.6:ENST00000532678.1:ENST00000526215.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	62	2	1.35483	1.4251749999999999	1.49552	0.0486665	0.0385038	0.159277	0.154097
chr5	54374260	54374360	2354365	0	+	0.52	(0.515,0.57]	chr5	227061	336	INTRON	INTRON	LINC01033	ENSG00000249069.8	ENST00000665899.1:ENST00000653566.1:ENST00000655801.1:ENST00000654906.1:ENST00000667636.1:ENST00000665869.1:ENST00000664079.1:ENST00000659703.1:ENST00000662351.1:ENST00000523194.7:ENST00000665795.1:ENST00000667992.1:ENST00000662022.1:ENST00000657771.1:ENST00000517934.1	lncRNA	lncRNA	lncRNA	lncRNA	11	62	2	1.35483	1.4251749999999999	1.49552	0.0486665	0.0385038	0.159277	0.154097
chr11	64775001	64775100	4965271	0	-	0.424242	(0.408,0.44]	chr11	467538	11	INTRON	INTRON	SF1	ENSG00000168066.21	ENST00000334944.9:ENST00000227503.13:ENST00000377394.7:ENST00000448404.5:ENST00000377390.8:ENST00000377387.5:ENST00000681407.1:ENST00000433274.6:ENST00000633899.1:ENST00000413951.5:ENST00000432725.1:ENST00000482693.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	17	110	2	1.38149	1.424995	1.4685	0.029918	0.0227753	0.129138	0.125295
chr2	112655926	112656025	852166	0	+	0.545455	(0.515,0.57]	chr2	95585	26	INTRON	INTRON	SLC20A1	ENSG00000144136.11	ENST00000272542.8:ENST00000498224.5:ENST00000433924.5:ENST00000456264.5:ENST00000413135.1:ENST00000480984.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	61	2	1.22131	1.424725	1.62814	0.0614604	0.035203	0.173483	0.150193
chr22	20118313	20118413	7478593	0	+	0.39	(0.378,0.408]	chr22	762775	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	RANBP1	ENSG00000099901.17	ENST00000435265.5:ENST00000432879.5:ENST00000430524.6:ENST00000402752.5:ENST00000488484.1:ENST00000331821.7:ENST00000411892.5:ENST00000467920.1:ENST00000416427.5:ENST00000421656.5:ENST00000423859.5:ENST00000418705.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	56	2	1.39189	1.424505	1.45712	0.0751636	0.0597975	0.193731	0.189982
chr16	21863582	21863682	6461877	0	-	0.26	[0,0.28]	chr16	623460	4	SS5_PROX	SS5_PROX:INTRON	NPIPB4	ENSG00000185864.18	ENST00000539318.5:ENST00000536041.5:ENST00000543449.1:ENST00000541674.5:ENST00000544693.5:ENST00000538859.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	23	222	2	1.29166	1.424435	1.55721	0.0307247	0.0212651	0.143385	0.113316
chr7	155309345	155309444	3451882	0	+	0.414141	(0.408,0.44]	chr7	322637	11	UTR3	UTR3:EXON_MRNA	INSIG1	ENSG00000186480.13	ENST00000344756.8:ENST00000340368.9	protein_coding	protein_coding	protein_coding	protein_coding	55	376	2	1.14877	1.42389	1.69901	0.021673	0.00204721	0.123836	0.0408819
chr3	143017574	143017674	1529241	0	+	0.32	(0.28,0.32]	chr3	159357	2	INTRON	INTRON	U2SURP	ENSG00000163714.18	ENST00000488497.7:ENST00000473835.7:ENST00000461591.5:ENST00000493598.6:ENST00000463563.6:ENST00000470400.5:ENST00000488587.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	23	184	2	1.22829	1.42382	1.61935	0.0305025	0.0185312	0.143385	0.108861
chrX	111700544	111700644	7702212	0	+	0.39	(0.378,0.408]	chrX	788221	105	INTRON	INTRON	ALG13	ENSG00000101901.12	ENST00000487141.5:ENST00000394780.8:ENST00000251943.8:ENST00000610588.4:ENST00000621367.4:ENST00000622997.3:ENST00000624161.3:ENST00000636363.1:ENST00000624881.3:ENST00000495283.5:ENST00000486353.5:ENST00000623144.3:ENST00000470971.5:ENST00000623148.3:ENST00000471924.5:ENST00000436609.5:ENST00000470704.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	83	2	1.42205	1.4237950000000001	1.42554	0.0425654	0.0390695	0.161228	0.148082
chr14	31024805	31024904	5857858	0	-	0.323232	(0.32,0.35]	chr14	556512	97	INTRON	INTRON	STRN3	ENSG00000196792.12	ENST00000355683.9:ENST00000357479.10:ENST00000555358.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	70	2	1.42176	1.42359	1.42542	0.0718205	0.0511006	0.187046	0.176696
chr7	119746813	119746913	3628806	0	-	0.27	[0,0.28]	chr7	337319	415	INTRON	INTRON	LINC02476	ENSG00000225546.6	ENST00000660268.1:ENST00000431071.5	lncRNA	lncRNA	lncRNA	lncRNA	18	165	2	1.10007	1.423515	1.74696	0.0619881	0.0203587	0.193996	0.110595
chr6	17651733	17651833	3065650	0	-	0.38	(0.378,0.408]	chr6	284820	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	NUP153	ENSG00000124789.12	ENST00000613258.4:ENST00000537253.5:ENST00000262077.3	protein_coding	protein_coding	protein_coding	protein_coding	14	95	2	1.2993	1.4233349999999998	1.54737	0.0619087	0.0164367	0.174514	0.110019
chr9	135940726	135940819	4372352	0	-	0.322581	(0.32,0.35]	chr9	402514	6	INTRON	INTRON	UBAC1	ENSG00000130560.9	ENST00000371756.4:ENST00000489050.5:ENST00000465873.5:ENST00000471163.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	18	135	2	1.2488	1.423255	1.59771	0.0360386	0.0216336	0.152462	0.11491
chr10	125090913	125091012	4713639	0	-	0.383838	(0.378,0.408]	chr10	434903	22	INTRON	INTRON	CTBP2	ENSG00000175029.17	ENST00000337195.9:ENST00000411419.6:ENST00000494626.6:ENST00000531469.5:ENST00000460976.5:ENST00000476817.1:ENST00000530884.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	69	2	1.29877	1.42321	1.54765	0.0751206	0.0334147	0.19367	0.146709
chr3	152302006	152302095	1535318	0	+	0.303371	(0.28,0.32]	chr3	159995	2	EXON_LNCRNA	EXON_LNCRNA:INTRON	MBNL1	ENSG00000152601.18	ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000461436.1:ENST00000495875.6:ENST00000324210.10:ENST00000493459.5:ENST00000459747.1:ENST00000460591.5:ENST00000545754.5:ENST00000357472.7:ENST00000324196.9:ENST00000498502.5:ENST00000463374.5:ENST00000485910.5:ENST00000465907.6:ENST00000492948.5:ENST00000485509.5:ENST00000464596.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	37	308	2	1.02991	1.42305	1.81619	0.0619175	0.00192847	0.174514	0.040717
chr16	58606302	58606402	6496147	0	-	0.5	(0.476,0.515]	chr16	628638	64	INTRON	INTRON	CNOT1	ENSG00000125107.19	ENST00000317147.10:ENST00000569240.5:ENST00000567188.5:ENST00000441024.6:ENST00000565605.5:ENST00000564557.1:ENST00000569916.1:ENST00000565697.1:ENST00000569020.5:ENST00000568158.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	12	80	2	1.27903	1.423025	1.56702	0.0608608	0.0257979	0.19287	0.121115
chr9	125333225	125333321	4198988	0	+	0.5	(0.476,0.515]	chr9	383237	2	INTRON	INTRON	GAPVD1	ENSG00000165219.23	ENST00000497580.5:ENST00000297933.11:ENST00000470056.5:ENST00000394105.6:ENST00000394083.6:ENST00000495955.5:ENST00000467750.5:ENST00000394104.6:ENST00000312123.13:ENST00000431329.5:ENST00000436712.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	66	2	1.4095	1.4229699999999998	1.43644	0.054012	0.047372	0.169265	0.16443
chr16	21441116	21441215	6460726	0	-	0.414141	(0.408,0.44]	chr16	623226	5	INTRON	INTRON	NPIPB3	ENSG00000169246.16	ENST00000545358.5:ENST00000543368.1:ENST00000544154.1	protein_coding	retained_intron	protein_coding	retained_intron:processed_transcript	13	86	2	1.27107	1.4226999999999999	1.57433	0.056267	0.0229059	0.166399	0.12581
chr19	1611029	1611125	7112680	0	-	0.333333	(0.32,0.35]	chr19	714575	19	UTR3	UTR3:EXON_MRNA:INTRON	TCF3	ENSG00000071564.17	ENST00000344749.9:ENST00000611869.5:ENST00000592395.5:ENST00000262965.12:ENST00000588136.7:ENST00000453954.6:ENST00000593064.5:ENST00000592628.5:ENST00000587425.5:ENST00000585731.5:ENST00000590684.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	22	169	2	1.24158	1.4226899999999998	1.6038	0.0358363	0.0141279	0.138907	0.103419
chr7	148822065	148822164	3670130	0	-	0.262626	[0,0.28]	chr7	340580	13	INTRON	INTRON	EZH2	ENSG00000106462.12	ENST00000683292.1:ENST00000320356.7:ENST00000492143.5:ENST00000478654.5:ENST00000350995.6:ENST00000460911.5:ENST00000683744.1:ENST00000682317.1:ENST00000682263.1:ENST00000684300.1:ENST00000476773.5:ENST00000483967.5:ENST00000498186.5:ENST00000483012.1:ENST00000682401.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	16	140	2	1.23635	1.42267	1.60899	0.0503341	0.0399242	0.161534	0.156383
chr6	32973712	32973812	2846464	0	+	0.47	(0.44,0.476]	chr6	268451	3	SS5_PROX	SS5_PROX:INTRON	BRD2	ENSG00000204256.14	ENST00000374825.9:ENST00000469132.2:ENST00000679179.1:ENST00000678778.1:ENST00000449085.4:ENST00000677331.1:ENST00000456339.5:ENST00000678250.1:ENST00000677085.1:ENST00000374831.8:ENST00000495733.5:ENST00000482914.5:ENST00000679099.1:ENST00000464592.6:ENST00000607833.5:ENST00000395287.5:ENST00000449025.5:ENST00000463639.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	21	147	2	1.18355	1.4222700000000001	1.66099	0.052504	0.00663027	0.178165	0.0703181
chr9	120840041	120840141	4335727	0	-	0.49	(0.476,0.515]	chr9	398321	62	INTRON	INTRON	PSMD5	ENSG00000095261.14	ENST00000210313.8:ENST00000373904.5:ENST00000476949.1:ENST00000471789.1:ENST00000625444.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	66	2	1.30826	1.4218	1.53534	0.0587053	0.0476737	0.170116	0.167915
chr11	62852481	62852581	4961855	0	-	0.42	(0.408,0.44]	chr11	467079	6	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SNHG1	ENSG00000255717.8	ENST00000689147.1:ENST00000686500.1:ENST00000665371.1:ENST00000687243.1:ENST00000537869.6:ENST00000686081.1:ENST00000686670.1:ENST00000690476.1:ENST00000688102.1:ENST00000691255.1:ENST00000539303.6:ENST00000538654.6:ENST00000540725.6:ENST00000658540.1:ENST00000685229.1:ENST00000686478.1:ENST00000686008.1:ENST00000692887.1:ENST00000691324.1:ENST00000692454.1:ENST00000685577.1:ENST00000693734.1:ENST00000537068.5:ENST00000537925.5:ENST00000541416.6:ENST00000541578.6:ENST00000537024.6:ENST00000686740.1:ENST00000663967.1:ENST00000670323.1:ENST00000668048.1:ENST00000660547.1:ENST00000689664.1:ENST00000690542.1:ENST00000539921.7:ENST00000687029.1:ENST00000661616.1:ENST00000670469.1:ENST00000664307.1:ENST00000665512.1:ENST00000656268.1:ENST00000535689.6:ENST00000663237.1:ENST00000544550.6:ENST00000660730.1:ENST00000660960.1:ENST00000662229.1:ENST00000670729.1:ENST00000655919.1:ENST00000671236.1:ENST00000667655.1:ENST00000653690.1:ENST00000661936.1:ENST00000544983.2:ENST00000535076.6:ENST00000656240.1:ENST00000539975.5:ENST00000656589.1:ENST00000545920.2:ENST00000537965.6:ENST00000670502.1:ENST00000662400.1:ENST00000663092.1:ENST00000656241.1:ENST00000652879.1:ENST00000668309.1:ENST00000545440.5:ENST00000542112.5:ENST00000541615.5	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	35	223	2	1.2061	1.42144	1.63678	0.0207612	0.00614505	0.122348	0.0676501
chr8	23571952	23572050	3715535	0	+	0.673469	(0.57,1]	chr8	345245	2	UTR3	UTR3:EXON_MRNA	SLC25A37	ENSG00000147454.14	ENST00000519973.6:ENST00000290075.10:ENST00000518881.5:ENST00000523883.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	53	169	2	1.21966	1.4213550000000001	1.62305	0.00985722	0.00161013	0.0838128	0.036868
chr10	68334320	68334419	4440781	0	+	0.333333	(0.32,0.35]	chr10	409480	17	INTRON	INTRON	HNRNPH3	ENSG00000096746.18	ENST00000469172.5:ENST00000461310.5:ENST00000265866.12:ENST00000480987.5:ENST00000486854.5:ENST00000467249.1:ENST00000354695.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	30	216	2	1.20688	1.42124	1.6356	0.0241999	0.0118604	0.130466	0.0899583
chr1	46304718	46304817	96546	0	+	0.373737	(0.35,0.378]	chr1	12964	5	INTRON	INTRON	UQCRH	ENSG00000173660.12	ENST00000311672.10:ENST00000489056.5:ENST00000486951.1:ENST00000496387.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	94	2	1.30814	1.4211550000000002	1.53417	0.0524547	0.0271808	0.160552	0.136494
chr6	85619817	85619917	3151213	0	-	0.39	(0.378,0.408]	chr6	293876	4	SS3_PROX	SS3_PROX:INTRON	ENSG00000271793:SYNCRIP	ENSG00000271793.2:ENSG00000135316.19	ENST00000682083.1:ENST00000683074.1:ENST00000681965.1:ENST00000682504.1:ENST00000682106.1:ENST00000683364.1:ENST00000683436.1:ENST00000684220.1:ENST00000683909.1:ENST00000684462.1:ENST00000616122.5:ENST00000678528.1:ENST00000676637.1:ENST00000677771.1:ENST00000355238.11:ENST00000678878.1:ENST00000677481.1:ENST00000677646.1:ENST00000676630.1:ENST00000678618.1:ENST00000676542.1:ENST00000677059.1:ENST00000444272.2:ENST00000678899.1:ENST00000369622.8:ENST00000678355.1:ENST00000676688.1:ENST00000677514.1:ENST00000678816.1:ENST00000678930.1:ENST00000678589.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	15	101	2	1.13511	1.4208850000000002	1.70666	0.0675756	0.0140577	0.183856	0.102916
chr1	30959876	30959976	411817	0	-	0.36	(0.35,0.378]	chr1	49653	55	INTRON	INTRON	PUM1	ENSG00000134644.16	ENST00000426105.7:ENST00000373747.7:ENST00000257075.9:ENST00000424085.6:ENST00000525843.5:ENST00000440538.6:ENST00000498419.5:ENST00000373741.8:ENST00000373742.6:ENST00000527498.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	18	127	2	1.30814	1.4205	1.53286	0.0524547	0.0112634	0.160552	0.0944169
chr1	70227724	70227822	142655	0	+	0.418367	(0.408,0.44]	chr1	15978	46	INTRON	INTRON	SRSF11	ENSG00000116754.14	ENST00000370951.5:ENST00000463877.1:ENST00000687381.1:ENST00000370950.7:ENST00000475204.5:ENST00000370949.2:ENST00000395136.7:ENST00000473950.5:ENST00000469170.5:ENST00000486667.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	25	152	2	1.08931	1.420185	1.75106	0.0400759	0.0084885	0.161534	0.0778788
chr1	75788866	75788963	144641	0	+	0.360825	(0.35,0.378]	chr1	16320	14	EXON_LNCRNA	EXON_LNCRNA:SS3_PROX:INTRON	RABGGTB	ENSG00000137955.16	ENST00000496055.5:ENST00000485459.5:ENST00000473406.5:ENST00000370826.3:ENST00000319942.8:ENST00000462042.5:ENST00000470201.5:ENST00000471759.5:ENST00000491266.5:ENST00000461653.5:ENST00000489450.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	20	145	2	1.33853	1.42005	1.50157	0.0273664	0.0201732	0.123904	0.121243
chr6	36594591	36594673	2854413	0	+	0.609756	(0.57,1]	chr6	269767	1	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	SRSF3	ENSG00000112081.17	ENST00000613941.4:ENST00000373715.11:ENST00000620242.1:ENST00000339436.11:ENST00000477442.6:ENST00000620941.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	15	45	2	1.04899	1.41981	1.79063	0.0593415	0.0356001	0.168781	0.15159
chr1	225420691	225420789	645681	0	-	0.27551	[0,0.28]	chr1	76379	5	INTRON	INTRON	LBR	ENSG00000143815.15	ENST00000272163.9:ENST00000338179.6:ENST00000651341.1:ENST00000425080.1:ENST00000488632.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	14	131	2	1.33503	1.4195449999999998	1.50406	0.0516061	0.0377353	0.159058	0.156605
chr19	28514424	28514524	7166239	0	-	0.49	(0.476,0.515]	chr19	724189	462	INTRON	INTRON	ENSG00000283403:ENSG00000267243	ENSG00000283403.1:ENSG00000267243.6	ENST00000592347.5:ENST00000593065.5	lncRNA	lncRNA	lncRNA	lncRNA	16	103	2	1.19704	1.41952	1.642	0.0540647	0.0138314	0.164573	0.10247
chr1	77948111	77948205	494196	0	-	0.308511	(0.28,0.32]	chr1	58478	7	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	FUBP1	ENSG00000162613.17	ENST00000370768.7:ENST00000492724.1:ENST00000492405.5:ENST00000488814.5:ENST00000489495.5:ENST00000294623.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	15	122	2	1.39438	1.4187699999999999	1.44316	0.0635439	0.0207353	0.177272	0.122348
chr5	179703217	179703304	2560729	0	+	0.551724	(0.515,0.57]	chr5	244872	2	INTRON	INTRON	CANX	ENSG00000127022.16	ENST00000681674.1:ENST00000681712.1:ENST00000681903.1:ENST00000680406.1:ENST00000502296.6:ENST00000504734.5:ENST00000452673.6:ENST00000679719.1:ENST00000679523.1:ENST00000679395.1:ENST00000681504.1:ENST00000679642.1:ENST00000681894.1:ENST00000680504.1:ENST00000681265.1:ENST00000680894.1:ENST00000680812.1:ENST00000680614.1:ENST00000680985.1:ENST00000680837.1:ENST00000680827.1:ENST00000681576.1:ENST00000680984.1:ENST00000680042.1:ENST00000681762.1:ENST00000502498.6:ENST00000681476.1:ENST00000681072.1:ENST00000247461.9:ENST00000513246.6:ENST00000680618.1:ENST00000502673.6:ENST00000680092.1:ENST00000506654.6:ENST00000514032.5:ENST00000681733.1:ENST00000679471.1:ENST00000679527.1:ENST00000680006.1:ENST00000681398.1:ENST00000681431.1:ENST00000680013.1:ENST00000681076.1:ENST00000681168.1:ENST00000509563.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	72	2	1.18251	1.41876	1.65501	0.0690131	0.016231	0.184298	0.109464
chr8	11807255	11807353	3702567	0	+	0.397959	(0.378,0.408]	chr8	343487	34	INTRON	INTRON	FDFT1	ENSG00000079459.13	ENST00000538689.4:ENST00000615631.4:ENST00000618539.4:ENST00000530337.5:ENST00000623368.3:ENST00000446331.6:ENST00000443614.6:ENST00000220584.9:ENST00000525607.5:ENST00000525283.5:ENST00000529464.5:ENST00000525900.5:ENST00000528812.5:ENST00000622850.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	25	158	2	1.22414	1.41866	1.61318	0.0238713	0.0152775	0.129075	0.0999282
chr1	180716192	180716292	270438	0	+	0.48	(0.476,0.515]	chr1	31620	334	INTRON	INTRON	XPR1	ENSG00000143324.14	ENST00000367590.9:ENST00000367589.3	protein_coding	protein_coding	protein_coding	protein_coding	10	66	2	1.38864	1.41845	1.44826	0.0547008	0.0482164	0.182743	0.153146
chr12	57234456	57234552	5146810	0	+	0.416667	(0.408,0.44]	chr12	486596	2	UTR3	UTR3:EXON_MRNA	SHMT2	ENSG00000182199.11	ENST00000556825.5:ENST00000328923.8:ENST00000554467.5:ENST00000557487.5:ENST00000557433.5:ENST00000414700.7:ENST00000557348.5:ENST00000553474.5:ENST00000555774.5:ENST00000449049.7:ENST00000555116.5:ENST00000553837.5:ENST00000557529.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	18	114	2	1.39095	1.417695	1.44444	0.046481	0.0138181	0.151299	0.10247
chr17	75889917	75890013	6838954	0	-	0.260417	[0,0.28]	chr17	676085	11	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	TRIM65	ENSG00000141569.12	ENST00000591668.5:ENST00000592642.1:ENST00000269383.8:ENST00000648382.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	15	146	2	1.27445	1.4175900000000001	1.56073	0.0615972	0.0236362	0.173858	0.129075
chr3	43719245	43719344	1410470	0	+	0.373737	(0.35,0.378]	chr3	147965	8	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	ABHD5	ENSG00000011198.10	ENST00000643520.1:ENST00000649763.1:ENST00000643140.1:ENST00000644371.2:ENST00000646378.1:ENST00000643477.1:ENST00000454293.2:ENST00000642351.1:ENST00000463153.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	10	71	2	1.40722	1.41683	1.42644	0.0733776	0.0390715	0.190105	0.161228
chr6	4799603	4799703	2791094	0	+	0.53	(0.515,0.57]	chr6	263598	224	INTRON	INTRON	CDYL	ENSG00000153046.18	ENST00000328908.9:ENST00000491864.1:ENST00000440139.5:ENST00000483019.1:ENST00000397588.8:ENST00000472453.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	10	56	2	1.33814	1.41683	1.49552	0.063703	0.0385038	0.177689	0.159277
chr7	157222361	157222460	3454794	0	+	0.333333	(0.32,0.35]	chr7	322986	17	EXON_MRNA	EXON_MRNA:INTRON	UBE3C	ENSG00000009335.18	ENST00000348165.10:ENST00000470408.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	14	107	2	1.14289	1.41652	1.69015	0.0771493	0.0159619	0.196285	0.109464
chr11	5450304	5450404	4897724	0	-	0.48	(0.476,0.515]	chr11	459193	89	INTRON	INTRON	HBG2:ENSG00000239920:HBE1:OR51B5	ENSG00000196565.15:ENSG00000239920.2:ENSG00000213931.7:ENSG00000167355.8	ENST00000380252.6:ENST00000380259.7:ENST00000292896.3:ENST00000380237.5:ENST00000420726.6:ENST00000420465.6:ENST00000415970.6:ENST00000418729.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:nonsense_mediated_decay:processed_transcript	17	106	2	1.03934	1.416375	1.79341	0.0740213	0.009837	0.19112	0.0877296
chr4	60852	60952	1905365	0	+	0.31	(0.28,0.32]	chr4	191003	3	INTRON	INTRON	ZNF595	ENSG00000272602.6	ENST00000608255.2:ENST00000609518.5:ENST00000509152.3:ENST00000610261.6	protein_coding	protein_coding	protein_coding	protein_coding	18	147	2	1.27	1.41596	1.56192	0.035139	0.0264715	0.149985	0.122554
chr7	121142739	121142838	3395195	0	+	0.383838	(0.378,0.408]	chr7	317777	2	INTRON	INTRON	CPED1	ENSG00000106034.18	ENST00000310396.10:ENST00000450913.6:ENST00000423795.5	protein_coding	protein_coding	protein_coding	protein_coding	25	168	2	1.36643	1.41575	1.46507	0.0236264	0.0115684	0.118716	0.0962115
chr1	153815197	153815293	556676	0	-	0.479167	(0.476,0.515]	chr1	65944	14	INTRON	INTRON	GATAD2B	ENSG00000143614.10	ENST00000368655.5:ENST00000634544.1:ENST00000634408.1:ENST00000634564.1	protein_coding	protein_coding	protein_coding	protein_coding	12	78	2	1.27239	1.415705	1.55902	0.0651036	0.0242957	0.179712	0.130919
chr8	129349610	129349709	4058756	0	-	0.363636	(0.35,0.378]	chr8	369545	45	INTRON	INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000657400.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1	lncRNA	lncRNA	lncRNA	lncRNA	10	73	2	1.38772	1.415575	1.44343	0.0555481	0.0514088	0.18407	0.158464
chr10	125066019	125066119	4713389	0	-	0.48	(0.476,0.515]	chr10	434897	265	INTRON	INTRON	CTBP2	ENSG00000175029.17	ENST00000337195.9:ENST00000411419.6:ENST00000494626.6:ENST00000531469.5:ENST00000460976.5:ENST00000476817.1:ENST00000530884.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	16	101	2	1.10022	1.41523	1.73024	0.066433	0.0127077	0.182434	0.0985982
chr21	10425985	10426085	7368254	0	+	0.42	(0.408,0.44]	chr21	751975	107	INTRON	INTRON	BAGE2	ENSG00000187172.15	ENST00000474011.5:ENST00000470054.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	12	79	2	1.21994	1.41509	1.61024	0.076179	0.0200746	0.195346	0.121073
chr14	52641198	52641296	5894509	0	-	0.397959	(0.378,0.408]	chr14	559768	14	UTR3	UTR3:EXON_MRNA	ERO1A	ENSG00000197930.13	ENST00000395686.8	protein_coding	protein_coding	protein_coding	protein_coding	9	59	2	1.29896	1.41474	1.53052	0.0744544	0.0575113	0.192012	0.187655
chr21	37389897	37389996	7406453	0	+	0.343434	(0.32,0.35]	chr21	754850	144	INTRON	INTRON	DYRK1A	ENSG00000157540.22	ENST00000646523.1:ENST00000647425.1:ENST00000647188.2:ENST00000647504.1:ENST00000644942.1:ENST00000338785.8:ENST00000643624.1:ENST00000643551.1:ENST00000426672.6:ENST00000398960.7	protein_coding	protein_coding	protein_coding	protein_coding	23	174	2	1.28804	1.414475	1.54091	0.0410461	0.00920223	0.1451	0.0855292
chr8	129564229	129564329	4060929	0	-	0.4	(0.378,0.408]	chr8	369672	71	INTRON	INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1:ENST00000676273.1:ENST00000667643.1:ENST00000668791.1:ENST00000663716.1:ENST00000663572.1:ENST00000676148.1:ENST00000667962.1:ENST00000674877.1:ENST00000675316.1:ENST00000674656.1:ENST00000446592.7:ENST00000667341.1:ENST00000675186.1:ENST00000652971.1:ENST00000661447.1:ENST00000674863.1:ENST00000675498.1:ENST00000675527.1:ENST00000676108.1:ENST00000657647.1:ENST00000675589.1:ENST00000675913.1:ENST00000675109.1:ENST00000671632.1:ENST00000671311.1:ENST00000676099.1:ENST00000660652.1:ENST00000675522.1:ENST00000675044.1:ENST00000675435.1:ENST00000674639.1:ENST00000676069.1:ENST00000675532.1:ENST00000674762.1:ENST00000523151.6:ENST00000675948.1:ENST00000665364.1:ENST00000657251.1:ENST00000675166.1:ENST00000674883.1:ENST00000675867.1:ENST00000674580.1:ENST00000675393.1:ENST00000520048.1:ENST00000674906.1:ENST00000676030.1:ENST00000670588.1:ENST00000675072.1:ENST00000664936.1:ENST00000652914.1:ENST00000657069.1:ENST00000674882.1	lncRNA	lncRNA	lncRNA	lncRNA	24	161	2	1.21746	1.4142649999999999	1.61107	0.0332051	0.0105	0.134128	0.0907259
chr9	37136636	37136736	4117819	0	+	0.51	(0.476,0.515]	chr9	375372	93	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000322831.6:ENST00000461038.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	18	113	2	1.18068	1.41404	1.6474	0.0432233	0.0153343	0.162255	0.100249
chr2	175073723	175073821	1271370	0	-	0.244898	[0,0.28]	chr2	134374	16	UTR3	UTR3:EXON_MRNA	ATF2	ENSG00000115966.18	ENST00000345739.9:ENST00000426833.7:ENST00000264110.7:ENST00000409437.5	protein_coding	protein_coding	protein_coding	protein_coding	20	177	2	1.09716	1.4136	1.73004	0.0559232	0.0214887	0.18407	0.114373
chr2	144388174	144388274	1240454	0	-	0.29	(0.28,0.32]	chr2	131633	42	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	ZEB2	ENSG00000169554.23	ENST00000639389.1:ENST00000636471.1:ENST00000627532.3:ENST00000638128.1:ENST00000637304.1:ENST00000636179.1:ENST00000636820.1:ENST00000637045.1:ENST00000636413.1:ENST00000638007.1:ENST00000638087.1:ENST00000419938.5:ENST00000409487.7:ENST00000440875.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	83	2	1.31424	1.413055	1.51187	0.0598267	0.0580847	0.188651	0.169278
chr2	55047085	55047184	1121376	0	-	0.484848	(0.476,0.515]	chr2	120167	3	INTRON	INTRON	RTN4	ENSG00000115310.19	ENST00000404909.5:ENST00000394611.6:ENST00000317610.11:ENST00000357732.8:ENST00000337526.11:ENST00000357376.7:ENST00000438462.1:ENST00000427710.5	protein_coding	protein_coding	protein_coding	protein_coding	18	107	2	1.23219	1.41292	1.59365	0.0306944	0.0300522	0.142135	0.13151
chr3	6692629	6692729	1358171	0	+	0.33	(0.32,0.35]	chr3	142524	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ENSG00000189229:ENSG00000223719	ENSG00000189229.12:ENSG00000223719.1	ENST00000433639.1:ENST00000655754.1:ENST00000658468.1:ENST00000669512.1:ENST00000667028.1:ENST00000655541.1:ENST00000668643.1:ENST00000671568.1:ENST00000671036.1:ENST00000669798.1:ENST00000655753.1:ENST00000655856.1:ENST00000658398.1:ENST00000661518.1:ENST00000661279.1:ENST00000655495.1:ENST00000663041.1:ENST00000659827.1:ENST00000667716.1:ENST00000668416.1:ENST00000658133.1:ENST00000342990.4:ENST00000660054.1:ENST00000671370.1:ENST00000454211.1	lncRNA	lncRNA	lncRNA:processed_pseudogene	lncRNA:processed_pseudogene	14	111	2	1.36307	1.4129	1.46273	0.0451962	0.0356087	0.163755	0.138061
chr11	65442943	65443043	4805972	0	+	0.37	(0.35,0.378]	chr11	446554	203	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	59	396	2	1.23366	1.4126699999999999	1.59168	0.0124856	0.00554366	0.0975276	0.0648867
chr8	23566186	23566265	3715472	0	+	0.607595	(0.57,1]	chr8	345230	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SLC25A37	ENSG00000147454.14	ENST00000519973.6:ENST00000290075.10:ENST00000417331.6:ENST00000518881.5:ENST00000520654.1:ENST00000523930.1:ENST00000523883.5:ENST00000517923.1:ENST00000520949.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	28	88	2	1.2795	1.412665	1.54583	0.0142415	0.0100025	0.103782	0.084484600000000007
chr2	74204819	74204917	813290	0	+	0.5	(0.476,0.515]	chr2	90925	35	EXON_MRNA	EXON_MRNA:INTRON	MTHFD2	ENSG00000065911.13	ENST00000677997.1:ENST00000677170.1:ENST00000678684.1:ENST00000409804.5:ENST00000489041.2:ENST00000470592.5:ENST00000678955.1:ENST00000394053.7:ENST00000677377.1:ENST00000679055.1:ENST00000678340.1:ENST00000477455.5:ENST00000409601.1:ENST00000678228.1:ENST00000488086.1:ENST00000462026.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	66	2	1.33919	1.412595	1.486	0.06316	0.0430512	0.197199	0.148082
chr1	28506350	28506442	57170	0	+	0.48913	(0.476,0.515]	chr1	7378	1	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	RCC1:SNHG3	ENSG00000180198.17:ENSG00000242125.3	ENST00000398958.6:ENST00000649185.1:ENST00000413987.1:ENST00000427469.5:ENST00000683442.1:ENST00000447507.1:ENST00000434290.6:ENST00000373833.10:ENST00000437681.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	128	826	2	1.37813	1.4124150000000002	1.4467	0.00518321	0.00319311	0.0632827	0.0520433
chr3	152335929	152336029	1535660	0	+	0.46	(0.44,0.476]	chr3	160003	3	INTRON	INTRON	MBNL1	ENSG00000152601.18	ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000495875.6:ENST00000324210.10:ENST00000493459.5:ENST00000459747.1:ENST00000460591.5:ENST00000545754.5:ENST00000357472.7:ENST00000324196.9:ENST00000498502.5:ENST00000463374.5:ENST00000485910.5:ENST00000465907.6:ENST00000492948.5:ENST00000485509.5:ENST00000464596.5	protein_coding	protein_coding	protein_coding	protein_coding	31	199	2	1.28797	1.4123100000000002	1.53665	0.0216456	0.00736108	0.11491	0.0766566
chr2	167934504	167934604	1259148	0	-	0.48	(0.476,0.515]	chr2	133340	334	INTRON	INTRON	B3GALT1-AS1	ENSG00000235335.3	ENST00000430546.2:ENST00000657553.1:ENST00000670221.1:ENST00000436982.2	lncRNA	lncRNA	lncRNA	lncRNA	18	117	2	1.33864	1.41214	1.48564	0.0270703	0.0251821	0.133519	0.123904
chr1	16337685	16337785	382472	0	-	0.53	(0.515,0.57]	chr1	44888	219	INTRON	INTRON	FBXO42	ENSG00000037637.11	ENST00000375592.8	protein_coding	protein_coding	protein_coding	protein_coding	21	114	2	1.31407	1.41191	1.50975	0.0391988	0.0084035	0.143072	0.0824683
chr11	86011236	86011336	5014254	0	-	0.27	[0,0.28]	chr11	472981	1	SS3_PROX	SS3_PROX:INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000630913.2:ENST00000528398.5:ENST00000356360.9:ENST00000534412.5:ENST00000531771.5:ENST00000531558.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	117	2	1.18694	1.4115000000000002	1.63606	0.0600846	0.0468781	0.190759	0.151917
chr11	130144518	130144616	4886486	0	+	0.367347	(0.35,0.378]	chr11	457028	12	UTR3	UTR3:EXON_MRNA	APLP2	ENSG00000084234.18	ENST00000650012.1:ENST00000338167.10:ENST00000263574.9:ENST00000278756.7	protein_coding	protein_coding	protein_coding	protein_coding	19	130	2	1.26861	1.4114550000000001	1.5543	0.0294789	0.0236849	0.142135	0.118716
chr7	148820672	148820770	3670116	0	-	0.295918	(0.28,0.32]	chr7	340579	11	EXON_MRNA	EXON_MRNA:INTRON	EZH2	ENSG00000106462.12	ENST00000683292.1:ENST00000320356.7:ENST00000492143.5:ENST00000478654.5:ENST00000350995.6:ENST00000460911.5:ENST00000683744.1:ENST00000684510.1:ENST00000682317.1:ENST00000682263.1:ENST00000684300.1:ENST00000476773.5:ENST00000483967.5:ENST00000498186.5:ENST00000483012.1:ENST00000682401.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	16	125	2	1.20923	1.411355	1.61348	0.0433387	0.0342608	0.162255	0.135561
chr7	158905488	158905586	3456629	0	+	0.336735	(0.32,0.35]	chr7	323190	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DYNC2I1	ENSG00000126870.16	ENST00000407559.8:ENST00000444851.5:ENST00000467220.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	76	2	1.38564	1.41132	1.437	0.0793006	0.0386366	0.199711	0.159793
chrX	71574493	71574593	7680387	0	+	0.35	(0.32,0.35]	chrX	786485	8	UTR3	UTR3:EXON_MRNA	OGT	ENSG00000147162.14	ENST00000373719.8:ENST00000488174.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	14	103	2	1.26579	1.4111449999999999	1.5565	0.0419833	0.0383034	0.161744	0.141858
chr17	27312566	27312665	6580730	0	+	0.272727	[0,0.28]	chr17	639649	3	UTR3	UTR3:EXON_MRNA	WSB1	ENSG00000109046.15	ENST00000467843.6:ENST00000262394.7:ENST00000348811.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	26	246	2	1.25892	1.4109500000000001	1.56298	0.0585305	0.00813238	0.167915	0.0810802
chr11	65501258	65501357	4806156	0	+	0.373737	(0.35,0.378]	chr11	446569	37	EXON_LNCRNA	EXON_LNCRNA	MALAT1	ENSG00000251562.9	ENST00000619449.2:ENST00000534336.1	lncRNA	lncRNA	lncRNA	lncRNA	1771	12253	2	1.2838	1.41062	1.53744	0.00789922	9.74384e-4	0.076155	0.0287765
chr1	25452185	25452283	48162	0	+	0.387755	(0.378,0.408]	chr1	5931	29	INTRON	INTRON	MACO1	ENSG00000204178.11	ENST00000399766.7:ENST00000374343.5:ENST00000647928.1:ENST00000470035.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	10	67	2	1.34117	1.4106100000000001	1.48005	0.0596711	0.0505568	0.17538	0.168954
chr7	5411483	5411582	3471960	0	-	0.383838	(0.378,0.408]	chr7	324678	42	INTRON	INTRON	TNRC18	ENSG00000182095.15	ENST00000399537.8:ENST00000430969.6:ENST00000399434.2	protein_coding	protein_coding	protein_coding	protein_coding	10	67	2	1.29896	1.410575	1.52219	0.0575113	0.0531838	0.187655	0.162538
chr5	10434472	10434571	2318490	0	+	0.555556	(0.515,0.57]	chr5	224765	9	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	MARCHF6	ENSG00000145495.16	ENST00000274140.10:ENST00000606497.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	24	129	2	1.35582	1.4105400000000001	1.46526	0.0292945	0.00843621	0.128055	0.0827116
chr1	244861901	244862000	673080	0	-	0.414141	(0.408,0.44]	chr1	79634	15	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	HNRNPU	ENSG00000153187.20	ENST00000649899.1:ENST00000640306.1:ENST00000444376.7:ENST00000640218.2:ENST00000639628.2:ENST00000440865.2:ENST00000638952.1:ENST00000366525.8:ENST00000639880.1:ENST00000283179.14:ENST00000638475.1:ENST00000476241.2:ENST00000640001.1:ENST00000640056.1:ENST00000638301.1:ENST00000639667.1:ENST00000640440.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	32	205	2	1.30902	1.4105349999999999	1.51205	0.0153664	0.0106565	0.108569	0.0861859
chr6	36598328	36598428	2854455	0	+	0.29	(0.28,0.32]	chr6	269780	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	SRSF3	ENSG00000112081.17	ENST00000613941.4:ENST00000373715.11:ENST00000339436.11:ENST00000477442.6:ENST00000620941.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	32	253	2	1.03181	1.4104299999999999	1.78905	0.057504	0.00584201	0.167723	0.0689446
chr1	155314565	155314664	229217	0	+	0.515152	(0.476,0.515]	chr1	26854	17	INTRON	INTRON	FDPS	ENSG00000160752.15	ENST00000611010.4:ENST00000468479.5:ENST00000447866.5:ENST00000461507.5:ENST00000474345.5:ENST00000471117.5:ENST00000368356.9:ENST00000467076.5:ENST00000495308.5:ENST00000491013.5:ENST00000356657.10:ENST00000465559.5:ENST00000470171.5:ENST00000612683.1:ENST00000489003.5:ENST00000477057.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	26	164	2	1.25064	1.4103400000000001	1.57004	0.0240386	0.0108509	0.129693	0.0873034
chr2	121459621	121459710	1220473	0	-	0.337079	(0.32,0.35]	chr2	129972	1	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	CLASP1	ENSG00000074054.20	ENST00000263710.8:ENST00000397587.7:ENST00000541377.5:ENST00000409078.8:ENST00000455322.6:ENST00000452274.6:ENST00000430234.5:ENST00000491646.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	11	82	2	1.35626	1.4102000000000001	1.46414	0.065059	0.0414162	0.179599	0.161578
chr11	64775499	64775598	4965276	0	-	0.383838	(0.378,0.408]	chr11	467538	16	INTRON	INTRON	SF1	ENSG00000168066.21	ENST00000334944.9:ENST00000227503.13:ENST00000377394.7:ENST00000448404.5:ENST00000377390.8:ENST00000377387.5:ENST00000681407.1:ENST00000433274.6:ENST00000633899.1:ENST00000413951.5:ENST00000432725.1:ENST00000482693.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	28	189	2	1.26319	1.4099300000000001	1.55667	0.0230699	0.0101145	0.12667	0.0850389
chr11	61966788	61966888	4958197	0	-	0.6	(0.57,1]	chr11	466168	4	SS5_PROX	SS5_PROX:INTRON	FTH1	ENSG00000167996.16	ENST00000529191.5:ENST00000529631.5:ENST00000530019.5:ENST00000273550.12:ENST00000534180.1:ENST00000532829.5:ENST00000620041.4:ENST00000526640.5:ENST00000532601.1:ENST00000534719.1:ENST00000533138.1:ENST00000529548.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	28	87	2	1.28664	1.4098549999999999	1.53307	0.0128189	0.0127801	0.0989891	0.0926667
chr16	31183357	31183453	6340587	0	+	0.34375	(0.32,0.35]	chr16	608325	1	SS3_PROX	SS3_PROX:INTRON	FUS	ENSG00000089280.19	ENST00000566605.5:ENST00000254108.12:ENST00000380244.7:ENST00000487509.6:ENST00000568685.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	19	154	2	1.15626	1.40983	1.6634	0.0599131	0.010634	0.190341	0.0861859
chr6	44130448	44130547	2872359	0	+	0.525253	(0.515,0.57]	chr6	272384	22	INTRON	INTRON	TMEM63B	ENSG00000137216.19	ENST00000259746.13:ENST00000323267.11:ENST00000532634.5:ENST00000534326.5:ENST00000525294.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	56	2	1.38719	1.4096899999999999	1.43219	0.0540435	0.0483322	0.181713	0.153415
chr8	129469966	129470065	4059974	0	-	0.272727	[0,0.28]	chr8	369602	127	INTRON	INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1:ENST00000676273.1:ENST00000667643.1:ENST00000668791.1:ENST00000663716.1:ENST00000663572.1:ENST00000676148.1:ENST00000667962.1:ENST00000674877.1:ENST00000675316.1:ENST00000674656.1:ENST00000446592.7:ENST00000667341.1:ENST00000675186.1:ENST00000652971.1:ENST00000661447.1:ENST00000674863.1:ENST00000675498.1:ENST00000675527.1:ENST00000676108.1:ENST00000657647.1:ENST00000675589.1:ENST00000675913.1:ENST00000675109.1:ENST00000671632.1:ENST00000671311.1:ENST00000676099.1:ENST00000660652.1:ENST00000675522.1:ENST00000675183.1:ENST00000658861.1:ENST00000663991.1:ENST00000675044.1:ENST00000675435.1:ENST00000674639.1:ENST00000676069.1:ENST00000675532.1:ENST00000674762.1:ENST00000523151.6:ENST00000675948.1:ENST00000665364.1:ENST00000657251.1:ENST00000675166.1:ENST00000674883.1:ENST00000675867.1:ENST00000674580.1:ENST00000675393.1:ENST00000520048.1:ENST00000674906.1:ENST00000676030.1:ENST00000670588.1:ENST00000675072.1:ENST00000664936.1:ENST00000652914.1:ENST00000657069.1	lncRNA	lncRNA	lncRNA	lncRNA	10	98	2	1.38026	1.409675	1.43909	0.0710571	0.0526509	0.185152	0.178401
chr9	37169427	37169527	4118149	0	+	0.4	(0.378,0.408]	chr9	375384	93	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000322831.6:ENST00000461038.5:ENST00000488607.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	25	164	2	0.967941	1.4096455	1.85135	0.07673	0.00284082	0.196164	0.0493426
chr4	39702782	39702882	1953038	0	+	0.44	(0.408,0.44]	chr4	195630	40	INTRON	INTRON	UBE2K	ENSG00000078140.14	ENST00000510934.5:ENST00000261427.10:ENST00000438068.6:ENST00000513231.5:ENST00000503368.5:ENST00000445950.2:ENST00000510719.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	34	216	2	1.21864	1.40956	1.60048	0.020561	0.00723784	0.122348	0.0729826
chr4	55396710	55396803	1960594	0	+	0.408602	(0.408,0.44]	chr4	196538	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TMEM165	ENSG00000134851.13	ENST00000381334.10:ENST00000506198.5:ENST00000508404.5:ENST00000514070.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	34	194	2	0.971896	1.409483	1.84707	0.0473223	0.0046079	0.169226	0.0597482
chr1	1391057	1391153	359827	0	-	0.34375	(0.32,0.35]	chr1	41780	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CCNL2	ENSG00000221978.13	ENST00000400809.8:ENST00000480479.5:ENST00000482621.5:ENST00000496007.5:ENST00000482365.5:ENST00000481223.6:ENST00000418865.6:ENST00000505849.5:ENST00000488340.5:ENST00000469113.5:ENST00000471930.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	31	213	2	1.00696	1.409335	1.81171	0.0488785	0.00676562	0.173637	0.0711802
chr7	74879775	74879874	3556648	0	-	0.525253	(0.515,0.57]	chr7	331156	110	INTRON	INTRON	STAG3L2	ENSG00000277072.5	ENST00000651031.1:ENST00000650988.1:ENST00000652688.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	16	86	2	1.12407	1.40896	1.69385	0.0581599	0.0139144	0.167723	0.10247
chr6	169669901	169669996	3266801	0	-	0.484211	(0.476,0.515]	chr6	303233	5	EXON_MRNA	EXON_MRNA:INTRON	WDR27	ENSG00000184465.16	ENST00000448612.6:ENST00000648472.1:ENST00000423258.5:ENST00000647790.1:ENST00000647873.1:ENST00000649303.1:ENST00000647889.1:ENST00000648017.1:ENST00000496752.1:ENST00000650296.1:ENST00000546953.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	78	2	1.40573	1.40827	1.41081	0.0430655	0.0410362	0.161534	0.148082
chr5	149495462	149495561	2750502	0	-	0.50505	(0.476,0.515]	chr5	258992	26	UTR3	UTR3:EXON_MRNA	CSNK1A1:ENSG00000230551	ENSG00000113712.19:ENSG00000230551.4	ENST00000261798.10:ENST00000377843.8:ENST00000657001.1:ENST00000499521.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron	12	79	2	1.27903	1.408065	1.5371	0.0608608	0.028567	0.19287	0.126677
chrX	66163376	66163469	7672665	0	+	0.354839	(0.35,0.378]	chrX	785242	1	INTRON	INTRON	HEPH	ENSG00000089472.18	ENST00000519389.6	protein_coding	protein_coding	protein_coding	protein_coding	15	107	2	1.33062	1.40769	1.48476	0.0374591	0.0300009	0.156024	0.129138
chr7	152407443	152407543	3681008	0	-	0.46	(0.44,0.476]	chr7	341660	484	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000682301.1:ENST00000452749.2:ENST00000680867.1:ENST00000683800.1:ENST00000684278.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	16	100	2	1.24652	1.407585	1.56865	0.0377548	0.0259267	0.156636	0.121619
chr22	19945042	19945140	7477433	0	+	0.377551	(0.35,0.378]	chr22	762554	28	INTRON	INTRON	COMT	ENSG00000093010.15	ENST00000676678.1:ENST00000403184.5:ENST00000361682.11:ENST00000403710.5:ENST00000407537.5:ENST00000467943.5:ENST00000678868.1:ENST00000678769.1:ENST00000428707.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	14	100	2	1.36085	1.40739	1.45393	0.0446772	0.0289548	0.149888	0.140852
chr9	111933787	111933886	4184835	0	+	0.484848	(0.476,0.515]	chr9	381737	9	UTR3	UTR3:EXON_MRNA	UGCG	ENSG00000148154.10	ENST00000374279.4	protein_coding	protein_coding	protein_coding	protein_coding	25	150	2	1.21503	1.40738	1.59973	0.0245245	0.0150784	0.131869	0.0994339
chr1	207047527	207047626	624912	0	-	0.282828	(0.28,0.32]	chr1	74431	38	UTR3	UTR3:EXON_MRNA	YOD1	ENSG00000180667.11	ENST00000367084.1:ENST00000315927.9	protein_coding	protein_coding	protein_coding	protein_coding	13	106	2	1.27959	1.407375	1.53516	0.0472883	0.0431104	0.16913	0.148082
chr17	37326745	37326845	6762243	0	-	0.5	(0.476,0.515]	chr17	664944	271	INTRON	INTRON	ACACA	ENSG00000278540.5	ENST00000616317.5:ENST00000614428.4:ENST00000613146.4:ENST00000615229.4:ENST00000621960.1:ENST00000617548.1:ENST00000616352.4:ENST00000614789.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	64	2	1.40573	1.40665	1.40757	0.0707852	0.0410362	0.184528	0.161534
chr2	96890936	96891036	1182134	0	-	0.44	(0.408,0.44]	chr2	126720	121	INTRON	INTRON	FAM178B	ENSG00000168754.15	ENST00000393526.6:ENST00000490605.3:ENST00000470789.5:ENST00000494172.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	23	151	2	1.24794	1.406565	1.56519	0.03068	0.0114991	0.143385	0.0889104
chr17	32363964	32364060	6598125	0	+	0.385417	(0.378,0.408]	chr17	641919	6	INTRON	INTRON	ZNF207	ENSG00000010244.19	ENST00000321233.10:ENST00000394673.6:ENST00000394670.9:ENST00000342555.10:ENST00000577908.5:ENST00000394679.9:ENST00000581531.5:ENST00000579416.1:ENST00000582705.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	20	132	2	1.26593	1.406545	1.54716	0.0680071	0.00717629	0.184298	0.0756118
chr7	128543827	128543927	3407482	0	+	0.34	(0.32,0.35]	chr7	318333	97	INTRON	INTRON	ENSG00000280828	ENSG00000280828.1	ENST00000479267.2	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	19	144	2	1.21472	1.406405	1.59809	0.0629961	0.00901235	0.176783	0.0851112
chr7	43651012	43651112	3525588	0	-	0.44	(0.408,0.44]	chr7	328754	3	SS3_PROX	SS3_PROX:INTRON	COA1	ENSG00000106603.20	ENST00000415076.6:ENST00000446330.6:ENST00000446564.5:ENST00000438444.5:ENST00000223336.11:ENST00000310564.10:ENST00000415798.5:ENST00000431651.5:ENST00000451651.5:ENST00000418140.5:ENST00000448704.5:ENST00000470156.1:ENST00000457939.1:ENST00000420441.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	60	2	1.31757	1.4064	1.49523	0.0705974	0.0534846	0.184528	0.180041
chr17	27310841	27310924	6580711	0	+	0.445783	(0.44,0.476]	chr17	639640	3	INTRON	INTRON	WSB1	ENSG00000109046.15	ENST00000467843.6:ENST00000262394.7:ENST00000348811.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	20	125	2	1.38395	1.4063400000000001	1.42873	0.0392605	0.0133161	0.143072	0.100515
chr16	30251224	30251323	6472621	0	-	0.40404	(0.378,0.408]	chr16	625566	50	INTRON	INTRON	NPIPB13	ENSG00000198064.14	ENST00000568053.5	protein_coding	protein_coding	protein_coding	protein_coding	23	152	2	1.13226	1.40592	1.67958	0.0473435	0.0077783	0.153019	0.0787356
chr19	39434634	39434732	7182446	0	-	0.510204	(0.476,0.515]	chr19	726281	10	EXON_MRNA	EXON_MRNA:INTRON	RPS16	ENSG00000105193.9	ENST00000251453.8:ENST00000339471.8:ENST00000599539.5:ENST00000601655.5:ENST00000601390.1:ENST00000599705.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	15	102	2	1.33919	1.4059050000000002	1.47262	0.06316	0.0182279	0.197199	0.107842
chr2	61535001	61535097	1131200	0	-	0.354167	(0.35,0.378]	chr2	121645	7	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	XPO1	ENSG00000082898.19	ENST00000676553.1:ENST00000677556.1:ENST00000677814.1:ENST00000676771.1:ENST00000677803.1:ENST00000677239.1:ENST00000678790.1:ENST00000677928.1:ENST00000678182.1:ENST00000677150.1:ENST00000678172.1:ENST00000678360.1:ENST00000678081.1:ENST00000676889.1:ENST00000676783.1:ENST00000679035.1:ENST00000677422.1:ENST00000677417.1:ENST00000677813.1:ENST00000676999.1:ENST00000676667.1:ENST00000401558.7:ENST00000428210.5:ENST00000677290.1:ENST00000677850.1:ENST00000451765.6:ENST00000676789.1:ENST00000678741.1:ENST00000404992.6:ENST00000406957.5:ENST00000443240.5:ENST00000420673.6:ENST00000481214.1:ENST00000449444.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	44	287	2	1.33962	1.40588	1.47214	0.0165834	0.00845421	0.102621	0.0828633
chr4	78830115	78830214	1981925	0	+	0.474747	(0.44,0.476]	chr4	198473	36	INTRON	INTRON	BMP2K	ENSG00000138756.19	ENST00000389010.7:ENST00000502613.3:ENST00000502871.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	64	2	1.29261	1.4058549999999999	1.5191	0.0583425	0.0526241	0.189184	0.160983
chr12	98598252	98598341	5199034	0	+	0.404494	(0.378,0.408]	chr12	491865	3	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SLC25A3	ENSG00000075415.15	ENST00000401722.7:ENST00000188376.9:ENST00000551917.5:ENST00000546766.5:ENST00000228318.8:ENST00000552981.6:ENST00000551123.5:ENST00000549338.5:ENST00000548847.1:ENST00000547908.1:ENST00000547444.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	18	120	2	1.06024	1.40578	1.75132	0.0772574	0.00695593	0.196285	0.0754576
chr1	110345038	110345138	182401	0	+	0.31	(0.28,0.32]	chr1	20237	1	SS3_PROX	SS3_PROX:INTRON	RBM15	ENSG00000162775.17	ENST00000652747.1:ENST00000618772.4:ENST00000487146.8:ENST00000369784.9:ENST00000650953.2:ENST00000654015.1:ENST00000617047.1	protein_coding	protein_coding	protein_coding	protein_coding	16	134	2	1.19334	1.4056350000000002	1.61793	0.0551834	0.0219851	0.18407	0.115364
chr3	149841620	149841720	1532201	0	+	0.5	(0.476,0.515]	chr3	159734	187	INTRON	INTRON	RNF13	ENSG00000082996.20	ENST00000344229.7:ENST00000470151.5:ENST00000466478.5:ENST00000491086.5:ENST00000392894.8:ENST00000467977.5:ENST00000474348.5:ENST00000467996.1:ENST00000468648.5:ENST00000459632.5:ENST00000466795.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	13	83	2	1.19725	1.4052449999999999	1.61324	0.0605672	0.026684	0.171122	0.134419
chr20	35734612	35734706	7336477	0	-	0.37234	(0.35,0.378]	chr20	747482	2	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	RBM39	ENSG00000131051.24	ENST00000253363.11:ENST00000639702.1:ENST00000656873.1:ENST00000463004.5:ENST00000361162.10:ENST00000461283.5:ENST00000403542.6:ENST00000338163.10:ENST00000528062.7:ENST00000429968.5:ENST00000444878.5:ENST00000665058.1:ENST00000374038.7:ENST00000412738.5:ENST00000434927.5:ENST00000425184.5:ENST00000481037.5:ENST00000455343.5:ENST00000416108.5:ENST00000426951.5:ENST00000477334.1:ENST00000442447.5:ENST00000449489.5:ENST00000433027.5:ENST00000487604.1:ENST00000453310.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	25	146	2	0.983789	1.4051345	1.82648	0.0544125	0.0150408	0.182272	0.0994339
chr6	34878991	34879082	3086239	0	-	0.505495	(0.476,0.515]	chr6	288704	4	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	TAF11	ENSG00000064995.19	ENST00000361288.9:ENST00000650109.1:ENST00000693593.1:ENST00000420584.3:ENST00000689560.1:ENST00000685682.1:ENST00000691871.1:ENST00000686190.1:ENST00000687970.1:ENST00000688059.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	59	2	1.32871	1.4044699999999999	1.48023	0.0678032	0.0559072	0.184298	0.18407
chr6	170553142	170553242	3267679	0	-	0.59	(0.57,1]	chr6	303388	1	CDS_START	CDS_START:CDS:EXON_MRNA	PSMB1	ENSG00000008018.9	ENST00000262193.7	protein_coding	protein_coding	protein_coding	protein_coding	20	65	2	1.34546	1.40425	1.46304	0.0241207	0.0148782	0.12011	0.107116
chr12	68617848	68617948	5161274	0	+	0.51	(0.476,0.515]	chr12	488573	64	INTRON	INTRON	RAP1B	ENSG00000127314.18	ENST00000460800.5:ENST00000393436.9:ENST00000250559.14:ENST00000425247.6:ENST00000501412.2:ENST00000450214.6:ENST00000463493.5:ENST00000537460.5:ENST00000341355.9:ENST00000538283.5:ENST00000541167.5:ENST00000422358.6:ENST00000489473.6:ENST00000545270.5:ENST00000538980.5:ENST00000543393.5:ENST00000542018.5:ENST00000540209.5:ENST00000378985.7:ENST00000453560.6:ENST00000534899.5:ENST00000542145.5:ENST00000539091.5:ENST00000535492.5:ENST00000540781.5:ENST00000485252.6:ENST00000538877.5:ENST00000541386.5:ENST00000543697.5:ENST00000545720.6:ENST00000541216.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	13	84	2	1.32381	1.40411	1.48441	0.0471595	0.0315624	0.152472	0.144381
chr19	1274029	1274121	6994639	0	+	0.478261	(0.476,0.515]	chr19	693007	5	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CIRBP	ENSG00000099622.14	ENST00000591935.5:ENST00000585913.5:ENST00000586773.5:ENST00000587896.6:ENST00000593093.5:ENST00000590347.5:ENST00000587169.5:ENST00000586636.5:ENST00000591376.5:ENST00000589235.5:ENST00000585914.5:ENST00000592234.5:ENST00000444172.6:ENST00000590188.5:ENST00000588917.2:ENST00000586555.2:ENST00000621399.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	20	127	2	1.03934	1.40411	1.76888	0.0740213	0.00509826	0.19112	0.0646039
chr2	96890040	96890140	1182125	0	-	0.5	(0.476,0.515]	chr2	126720	112	INTRON	INTRON	FAM178B	ENSG00000168754.15	ENST00000393526.6:ENST00000490605.3:ENST00000470789.5:ENST00000494172.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	19	120	2	1.13137	1.4040599999999999	1.67675	0.055492	0.00953323	0.165463	0.0863913
chr14	101765053	101765153	5818527	0	+	0.48	(0.476,0.515]	chr14	551815	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	PPP2R5C	ENSG00000078304.20	ENST00000694906.1:ENST00000422945.6:ENST00000554442.5:ENST00000556068.5:ENST00000556260.6:ENST00000328724.9:ENST00000554504.1:ENST00000553890.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	32	202	2	1.37375	1.4035600000000001	1.43337	0.0169544	0.00937227	0.10398	0.0859964
chr1	41221491	41221591	430622	0	-	0.27	[0,0.28]	chr1	52255	349	INTRON	INTRON	SCMH1	ENSG00000010803.17	ENST00000695335.1:ENST00000372596.5:ENST00000372597.5:ENST00000337495.9:ENST00000488592.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	87	2	1.37159	1.403285	1.43498	0.0775714	0.0634918	0.198135	0.196285
chr1	65414420	65414519	137164	0	+	0.252525	[0,0.28]	chr1	15461	15	UTR3	UTR3:EXON_MRNA	DNAJC6	ENSG00000116675.16	ENST00000263441.11:ENST00000395325.7:ENST00000371069.5	protein_coding	protein_coding	protein_coding	protein_coding	9	87	2	1.37159	1.403285	1.43498	0.0775714	0.0634918	0.198135	0.196285
chr1	205613281	205613380	623312	0	-	0.282828	(0.28,0.32]	chr1	74129	55	UTR3	UTR3:EXON_MRNA:INTRON	ELK4	ENSG00000158711.14	ENST00000616704.4:ENST00000357992.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	18	146	2	1.18839	1.4031600000000002	1.61793	0.0464835	0.0219851	0.166828	0.115364
chr11	28114203	28114302	4752212	0	+	0.353535	(0.35,0.378]	chr11	440072	2	INTRON	INTRON	METTL15	ENSG00000169519.21	ENST00000406787.7:ENST00000403099.5:ENST00000451385.6:ENST00000407364.8:ENST00000532947.2:ENST00000634627.1:ENST00000634973.1:ENST00000303459.10:ENST00000634721.1:ENST00000634762.1:ENST00000437814.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	20	140	2	1.31178	1.40274	1.4937	0.0400208	0.0133129	0.143467	0.100493
chrX	73844531	73844631	7837969	0	-	0.45	(0.44,0.476]	chrX	799611	72	EXON_LNCRNA	EXON_LNCRNA:INTRON	XIST	ENSG00000229807.13	ENST00000650627.1:ENST00000434839.3:ENST00000429829.6:ENST00000650366.1:ENST00000650186.1:ENST00000635841.2:ENST00000650637.1:ENST00000648970.1:ENST00000666309.1	lncRNA	lncRNA	lncRNA	lncRNA	34	216	2	1.21163	1.402585	1.59354	0.03068	0.00390212	0.13151	0.0569765
chr1	30984829	30984929	412080	0	-	0.4	(0.378,0.408]	chr1	49701	28	INTRON	INTRON	PUM1	ENSG00000134644.16	ENST00000426105.7:ENST00000373747.7:ENST00000257075.9:ENST00000424085.6:ENST00000525843.5:ENST00000440538.6:ENST00000498419.5:ENST00000373741.8:ENST00000373742.6:ENST00000532678.1:ENST00000526215.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	61	2	1.39189	1.4024800000000002	1.41307	0.0751636	0.0510067	0.193731	0.176593
chr8	11806862	11806961	3702563	0	+	0.282828	(0.28,0.32]	chr8	343487	30	INTRON	INTRON	FDFT1	ENSG00000079459.13	ENST00000538689.4:ENST00000615631.4:ENST00000618539.4:ENST00000530337.5:ENST00000623368.3:ENST00000446331.6:ENST00000443614.6:ENST00000220584.9:ENST00000525607.5:ENST00000525283.5:ENST00000529464.5:ENST00000525900.5:ENST00000528812.5:ENST00000622850.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	19	141	2	1.11542	1.4015900000000001	1.68776	0.0483831	0.0272985	0.172247	0.123904
chr11	64772730	64772829	4965247	0	-	0.414141	(0.408,0.44]	chr11	467532	8	INTRON	INTRON	SF1	ENSG00000168066.21	ENST00000334944.9:ENST00000227503.13:ENST00000377394.7:ENST00000448404.5:ENST00000377390.8:ENST00000377387.5:ENST00000681407.1:ENST00000433274.6:ENST00000633899.1:ENST00000413951.5:ENST00000432725.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	33	211	2	1.29651	1.401175	1.50584	0.0224678	0.00655058	0.116939	0.0735539
chr20	49279800	49279892	7284616	0	+	0.380435	(0.378,0.408]	chr20	741054	2	INTRON	INTRON	ZFAS1	ENSG00000177410.13	ENST00000371743.8:ENST00000417721.5:ENST00000441722.5:ENST00000450535.5:ENST00000458653.5:ENST00000428008.6:ENST00000620594.2:ENST00000652916.1:ENST00000326677.9:ENST00000623640.1	lncRNA	lncRNA	lncRNA	lncRNA	24	167	2	1.25855	1.401065	1.54358	0.0328382	0.0106878	0.145164	0.0861937
chr7	119776599	119776699	3629105	0	-	0.38	(0.378,0.408]	chr7	337323	241	INTRON	INTRON	LINC02476	ENSG00000225546.6	ENST00000660268.1:ENST00000431071.5:ENST00000426413.2	lncRNA	lncRNA	lncRNA	lncRNA	12	81	2	1.26593	1.400695	1.53546	0.0680071	0.0265688	0.184298	0.134088
chr8	23568161	23568258	3715493	0	+	0.463918	(0.44,0.476]	chr8	345233	15	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	SLC25A37	ENSG00000147454.14	ENST00000519973.6:ENST00000290075.10:ENST00000417331.6:ENST00000518881.5:ENST00000520654.1:ENST00000523930.1:ENST00000523883.5:ENST00000522164.5:ENST00000521637.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	123	773	2	1.26877	1.4006750000000001	1.53258	0.010411	0.00156488	0.085482	0.0365263
chr9	37165232	37165331	4118107	0	+	0.292929	(0.28,0.32]	chr9	375384	51	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000322831.6:ENST00000461038.5:ENST00000488607.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	20	162	2	1.31569	1.400195	1.4847	0.0292243	0.0272661	0.136494	0.128055
chr6	16145903	16145989	2825947	0	+	0.27907	[0,0.28]	chr6	265335	2	INTRON	INTRON	MYLIP	ENSG00000007944.15	ENST00000356840.8:ENST00000349606.4	protein_coding	protein_coding	protein_coding	protein_coding	11	107	2	1.29677	1.4001700000000001	1.50357	0.0741215	0.0436989	0.191297	0.162255
chr13	110895125	110895223	5650442	0	-	0.326531	(0.32,0.35]	chr13	538355	6	EXON_LNCRNA	EXON_LNCRNA:INTRON	ANKRD10:ANKRD10-IT1	ENSG00000088448.14:ENSG00000229152.2	ENST00000267339.6:ENST00000489973.6:ENST00000310847.8:ENST00000465753.1:ENST00000475809.1:ENST00000494859.5:ENST00000426991.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:nonsense_mediated_decay:lncRNA:processed_transcript	41	308	2	1.13782	1.399715	1.66161	0.0412431	0.00262883	0.145463	0.0471412
chr16	16663947	16664041	6312507	0	+	0.340426	(0.32,0.35]	chr16	604127	4	EXON_LNCRNA	EXON_LNCRNA	ENSG00000260126	ENSG00000260126.2	ENST00000567465.2	lncRNA	lncRNA	lncRNA	lncRNA	13	102	2	1.32932	1.399605	1.46989	0.0540385	0.0331434	0.181713	0.133994
chr6	4799403	4799503	2791092	0	+	0.39	(0.378,0.408]	chr6	263598	222	INTRON	INTRON	CDYL	ENSG00000153046.18	ENST00000328908.9:ENST00000491864.1:ENST00000440139.5:ENST00000483019.1:ENST00000397588.8:ENST00000472453.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	24	159	2	1.38935	1.3995250000000001	1.4097	0.0238044	0.0147271	0.118889	0.106658
chr11	65433257	65433357	4805875	0	+	0.3	(0.28,0.32]	chr11	446554	106	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	52	414	2	1.34706	1.39916	1.45126	0.0223788	0.00591049	0.116912	0.0694038
chr16	16511314	16511414	6310975	0	+	0.56	(0.515,0.57]	chr16	604098	113	INTRON	INTRON	ENSG00000260126	ENSG00000260126.2	ENST00000567465.2	lncRNA	lncRNA	lncRNA	lncRNA	16	88	2	1.30263	1.3990749999999998	1.49552	0.0385038	0.0280883	0.159277	0.125081
chr2	172594042	172594141	920289	0	+	0.515152	(0.476,0.515]	chr2	101386	6	INTRON	INTRON	PDK1	ENSG00000152256.14	ENST00000392571.6:ENST00000410055.5:ENST00000282077.8:ENST00000466437.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	65	2	1.38864	1.39907	1.4095	0.0547008	0.054012	0.182743	0.16443
chr8	23542356	23542433	3715232	0	+	0.363636	(0.35,0.378]	chr8	345221	1	INTRON	INTRON	SLC25A37	ENSG00000147454.14	ENST00000519973.6:ENST00000290075.10:ENST00000417331.6:ENST00000518881.5:ENST00000520654.1:ENST00000523930.1:ENST00000523883.5:ENST00000517923.1:ENST00000520949.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	21	147	2	1.30357	1.398635	1.4937	0.0369996	0.0133129	0.139194	0.100493
chr3	42628495	42628593	1406259	0	+	0.408163	(0.378,0.408]	chr3	147680	14	EXON_MRNA	EXON_MRNA:INTRON	NKTR	ENSG00000114857.19	ENST00000468735.6:ENST00000429888.5:ENST00000232978.13:ENST00000465584.5:ENST00000466553.1:ENST00000498730.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	25	166	2	1.35027	1.39856	1.44685	0.0250935	0.0125358	0.12011	0.0979089
chr7	111374373	111374473	3622226	0	-	0.31	(0.28,0.32]	chr7	337093	4105	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	19	157	2	1.14578	1.398455	1.65113	0.0534817	0.0165664	0.180041	0.102621
chr1	155680108	155680194	563235	0	-	0.453488	(0.44,0.476]	chr1	67197	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	YY1AP1	ENSG00000163374.20	ENST00000368339.9:ENST00000295566.8:ENST00000368330.6:ENST00000436865.5:ENST00000359205.9:ENST00000407221.5:ENST00000404643.5:ENST00000361140.8:ENST00000361831.9:ENST00000347088.9:ENST00000354691.9:ENST00000368340.9:ENST00000311573.9:ENST00000355499.9:ENST00000405763.7:ENST00000493625.5:ENST00000476093.5:ENST00000443231.5:ENST00000496324.5:ENST00000476027.5:ENST00000454523.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	20	126	2	1.09855	1.39819	1.69783	0.0526931	0.0103825	0.178506	0.0852803
chr9	131143380	131143479	4215806	0	+	0.252525	[0,0.28]	chr9	386555	5	INTRON	INTRON	NUP214	ENSG00000126883.19	ENST00000695497.1:ENST00000695498.1:ENST00000695496.1:ENST00000695495.1:ENST00000695494.1:ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000525561.2:ENST00000651022.1:ENST00000695499.1:ENST00000530863.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	34	317	2	1.39273	1.3980700000000001	1.40341	0.0275777	0.0137415	0.123904	0.10247
chr4	55404037	55404136	1960671	0	+	0.464646	(0.44,0.476]	chr4	196553	3	INTRON	INTRON	TMEM165	ENSG00000134851.13	ENST00000381334.10:ENST00000506198.5:ENST00000508404.5:ENST00000511710.1:ENST00000502797.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	32	202	2	1.24469	1.39798	1.55127	0.0352667	0.00422765	0.137535	0.0595466
chr3	129277598	129277685	1499437	0	+	0.344828	(0.32,0.35]	chr3	156655	3	UTR3	UTR3:EXON_MRNA	COPG1	ENSG00000181789.14	ENST00000314797.10:ENST00000515725.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	33	249	2	1.14787	1.39781	1.64775	0.0518051	0.00317022	0.159306	0.051761
chr18	709767	709866	6939752	0	-	0.363636	(0.35,0.378]	chr18	686444	28	INTRON	INTRON	ENOSF1	ENSG00000132199.20	ENST00000647584.2:ENST00000383578.7:ENST00000340116.12:ENST00000581475.5:ENST00000580982.5:ENST00000585128.6:ENST00000584453.5:ENST00000578651.5:ENST00000585004.5:ENST00000583771.1:ENST00000580605.5:ENST00000581332.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	16	119	2	1.25085	1.397365	1.54388	0.0565857	0.0177572	0.184867	0.105629
chr18	77981424	77981523	6990169	0	-	0.515152	(0.476,0.515]	chr18	691894	14	INTRON	INTRON	LINC01029	ENSG00000265843.3	ENST00000657337.1:ENST00000669341.1:ENST00000671271.1:ENST00000668585.1:ENST00000666771.1:ENST00000667842.1:ENST00000661306.1:ENST00000662598.1:ENST00000662109.1:ENST00000662085.1:ENST00000583106.1:ENST00000582805.1:ENST00000656930.1	lncRNA	lncRNA	lncRNA	lncRNA	23	154	2	1.20452	1.397275	1.59003	0.04391	0.00796329	0.162255	0.0764574
chr1	23309860	23309959	399235	0	-	0.323232	(0.32,0.35]	chr1	47830	35	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	HNRNPR	ENSG00000125944.21	ENST00000641107.1:ENST00000478691.5:ENST00000302271.11:ENST00000374616.7:ENST00000476660.1:ENST00000374612.5:ENST00000675048.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	17	118	2	1.12636	1.3972	1.66804	0.0507221	0.0271264	0.175785	0.123904
chr2	61535773	61535870	1131208	0	-	0.340206	(0.32,0.35]	chr2	121645	15	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	XPO1	ENSG00000082898.19	ENST00000676553.1:ENST00000677556.1:ENST00000677814.1:ENST00000676771.1:ENST00000677803.1:ENST00000677239.1:ENST00000678790.1:ENST00000677928.1:ENST00000678182.1:ENST00000677150.1:ENST00000678172.1:ENST00000678360.1:ENST00000678081.1:ENST00000676889.1:ENST00000676783.1:ENST00000679035.1:ENST00000677422.1:ENST00000677417.1:ENST00000677813.1:ENST00000676999.1:ENST00000676667.1:ENST00000401558.7:ENST00000428210.5:ENST00000677290.1:ENST00000677850.1:ENST00000451765.6:ENST00000676789.1:ENST00000678741.1:ENST00000404992.6:ENST00000406957.5:ENST00000443240.5:ENST00000420673.6:ENST00000481214.1:ENST00000449444.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	25	189	2	1.16171	1.39717	1.63263	0.0663637	0.00455315	0.18226	0.0620473
chr7	151512911	151513011	3674856	0	-	0.42	(0.408,0.44]	chr7	341207	144	INTRON	INTRON	RHEB	ENSG00000106615.10	ENST00000262187.10:ENST00000472642.5:ENST00000478470.5:ENST00000496004.5:ENST00000470370.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	78	2	1.21994	1.397135	1.57433	0.076179	0.0229059	0.195346	0.12581
chr1	113951886	113951981	192023	0	+	0.336842	(0.32,0.35]	chr1	21153	2	INTRON	INTRON	HIPK1	ENSG00000163349.22	ENST00000426820.7:ENST00000626993.2:ENST00000369559.8:ENST00000369558.5:ENST00000369561.8:ENST00000369555.6:ENST00000340480.8	protein_coding	protein_coding	protein_coding	protein_coding	13	97	2	1.33779	1.3970099999999999	1.45623	0.0707935	0.0247853	0.184528	0.131909
chr22	21793365	21793464	7560640	0	-	0.545455	(0.515,0.57]	chr22	773370	42	INTRON	INTRON	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	17	91	2	1.35915	1.3967900000000002	1.43443	0.0306384	0.0236015	0.131364	0.12907
chr20	32783671	32783768	7256869	0	+	0.412371	(0.408,0.44]	chr20	737132	19	INTRON	INTRON	DNMT3B	ENSG00000088305.19	ENST00000696232.1:ENST00000328111.6:ENST00000696231.1:ENST00000348286.6:ENST00000353855.6:ENST00000696233.1:ENST00000443239.7:ENST00000696234.1:ENST00000696235.1:ENST00000456297.6:ENST00000696236.1:ENST00000696237.1:ENST00000201963.3:ENST00000696238.1:ENST00000696239.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	19	122	2	1.18966	1.396285	1.60291	0.0509699	0.0106839	0.157186	0.0917964
chr7	105312369	105312469	3603140	0	-	0.48	(0.476,0.515]	chr7	336161	54	INTRON	INTRON	SRPK2	ENSG00000135250.17	ENST00000393651.8:ENST00000482897.5:ENST00000460391.5:ENST00000462282.5:ENST00000465112.5:ENST00000482862.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	12	76	2	1.38299	1.396245	1.4095	0.054012	0.0361854	0.16443	0.152746
chr1	65278106	65278205	135774	0	+	0.484848	(0.476,0.515]	chr1	15346	128	INTRON	INTRON	DNAJC6	ENSG00000116675.16	ENST00000463018.5:ENST00000494710.6:ENST00000263441.11:ENST00000395325.7:ENST00000483402.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	21	133	2	1.25417	1.3961999999999999	1.53823	0.0336668	0.0141306	0.134145	0.103436
chr5	131392090	131392190	2485923	0	+	0.34	(0.32,0.35]	chr5	237145	11	UTR3	UTR3:EXON_MRNA:INTRON	CDC42SE2	ENSG00000158985.14	ENST00000395246.5:ENST00000505065.2:ENST00000503291.5:ENST00000360515.7:ENST00000502582.1	protein_coding	protein_coding	protein_coding	protein_coding	20	151	2	1.24023	1.3960599999999999	1.55189	0.0440036	0.0146077	0.149626	0.106092
chr11	66630627	66630726	4810943	0	+	0.383838	(0.378,0.408]	chr11	447879	8	INTRON	INTRON	RBM14-RBM4	ENSG00000248643.5	ENST00000412278.2:ENST00000511114.1:ENST00000421355.1:ENST00000500635.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	20	135	2	1.35447	1.39588	1.43729	0.0270512	0.0213592	0.123904	0.12369
chr9	128653954	128654053	4358633	0	-	0.464646	(0.44,0.476]	chr9	400527	127	INTRON	INTRON	DYNC2I2	ENSG00000119333.12	ENST00000372715.7:ENST00000419989.2:ENST00000451652.5:ENST00000480613.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	73	2	1.35523	1.39574	1.43625	0.063142	0.0430576	0.197183	0.148082
chr2	230819988	230820087	1031244	0	+	0.282828	(0.28,0.32]	chr2	110057	14	UTR3	UTR3:EXON_MRNA	CAB39	ENSG00000135932.12	ENST00000258418.10	protein_coding	protein_coding	protein_coding	protein_coding	10	82	2	1.34841	1.3956050000000002	1.4428	0.0712927	0.0525144	0.185716	0.178179
chr22	21500369	21500469	7560094	0	-	0.45	(0.44,0.476]	chr22	773318	79	INTRON	INTRON	PI4KAP2	ENSG00000183506.17	ENST00000450651.5:ENST00000467443.5:ENST00000479693.1:ENST00000476537.1:ENST00000491562.5	transcribed_unitary_pseudogene	retained_intron	transcribed_unitary_pseudogene	retained_intron:processed_transcript	15	97	2	1.35936	1.39553	1.4317	0.0364186	0.0304668	0.143385	0.138959
chr9	130885981	130886081	4215593	0	+	0.6	(0.57,1]	chr9	386487	4	UTR3	UTR3:EXON_MRNA	ABL1	ENSG00000097007.19	ENST00000318560.6	protein_coding	protein_coding	protein_coding	protein_coding	52	168	2	1.14643	1.395165	1.6439	0.0168957	0.00107268	0.110899	0.0301233
chr1	23053360	23053460	44101	0	+	0.34	(0.32,0.35]	chr1	5273	2	SS3_PROX	SS3_PROX:INTRON	KDM1A	ENSG00000004487.18	ENST00000692214.1:ENST00000686934.1:ENST00000689853.1:ENST00000465864.2:ENST00000691256.1:ENST00000688122.1:ENST00000692056.1:ENST00000692853.1:ENST00000689366.1:ENST00000686270.1:ENST00000685102.1:ENST00000690627.1:ENST00000686771.1:ENST00000692209.1:ENST00000686339.1:ENST00000691813.1:ENST00000693156.1:ENST00000688235.1:ENST00000692975.1:ENST00000687202.1:ENST00000691682.1:ENST00000691404.1:ENST00000691694.1:ENST00000688680.1:ENST00000356634.7:ENST00000400181.9:ENST00000481879.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	14	106	2	1.20134	1.39514	1.58894	0.0737029	0.0183147	0.190643	0.115801
chr10	60786871	60786970	4435856	0	+	0.313131	(0.28,0.32]	chr10	409184	12	EXON_MRNA	EXON_MRNA:INTRON	CDK1	ENSG00000170312.17	ENST00000519078.6:ENST00000475504.6:ENST00000316629.8:ENST00000395284.8:ENST00000448257.6:ENST00000373809.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	26	206	2	1.38549	1.395085	1.40468	0.0335142	0.014524	0.134145	0.10553
chr8	23567872	23567969	3715490	0	+	0.443299	(0.44,0.476]	chr8	345233	12	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	SLC25A37	ENSG00000147454.14	ENST00000519973.6:ENST00000290075.10:ENST00000417331.6:ENST00000518881.5:ENST00000520654.1:ENST00000523930.1:ENST00000523883.5:ENST00000522164.5:ENST00000521637.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	209	1239	2	1.05789	1.39486	1.73183	0.0159802	8.22479e-4	0.109464	0.0264869
chr7	76612893	76612993	3340997	0	+	0.42	(0.408,0.44]	chr7	311170	610	INTRON	INTRON	ENSG00000205485	ENSG00000205485.13	ENST00000418663.5:ENST00000450661.1:ENST00000423084.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	14	89	2	1.11783	1.39364	1.66945	0.0699408	0.0218479	0.184298	0.123836
chr9	128273365	128273456	4358204	0	-	0.527473	(0.515,0.57]	chr9	400435	1	SS5_PROX	SS5_PROX:INTRON	GOLGA2	ENSG00000167110.19	ENST00000421699.8:ENST00000611957.5:ENST00000693185.1:ENST00000686291.1:ENST00000687179.1:ENST00000458730.3:ENST00000693047.1:ENST00000686884.1:ENST00000693180.1:ENST00000691040.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	18	95	2	1.22612	1.3934700000000002	1.56082	0.0350259	0.0193183	0.149517	0.108861
chr9	37121424	37121499	4117663	0	+	0.333333	(0.32,0.35]	chr9	375359	3	SS3_PROX	SS3_PROX:INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000322831.6:ENST00000461038.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	15	113	2	1.27967	1.3933900000000001	1.50711	0.0591737	0.0205297	0.168318	0.122348
chr17	27097212	27097312	6579797	0	+	0.5	(0.476,0.515]	chr17	639586	4	INTRON	INTRON	ENSG00000285822	ENSG00000285822.1	ENST00000649401.1	lncRNA	lncRNA	lncRNA	lncRNA	36	228	2	1.33784	1.3933399999999998	1.44884	0.0136229	0.0101771	0.10169	0.0850389
chr3	41206072	41206172	1403090	0	+	0.31	(0.28,0.32]	chr3	147417	53	INTRON	INTRON	CTNNB1	ENSG00000168036.18	ENST00000643541.1:ENST00000426215.5:ENST00000645210.1:ENST00000646381.1:ENST00000405570.6:ENST00000642248.1:ENST00000433400.6:ENST00000642992.1:ENST00000431914.6:ENST00000642836.1:ENST00000396185.8:ENST00000642986.1:ENST00000644678.1:ENST00000643031.1:ENST00000396183.7:ENST00000645982.1:ENST00000453024.6:ENST00000645900.1:ENST00000647264.1:ENST00000646174.1:ENST00000643992.1:ENST00000642886.1:ENST00000647390.1:ENST00000643052.1:ENST00000488914.2:ENST00000349496.11:ENST00000642426.1:ENST00000646074.1:ENST00000645276.1:ENST00000644138.1:ENST00000646116.1:ENST00000644873.1:ENST00000643865.1:ENST00000644867.1:ENST00000646725.1:ENST00000645493.1:ENST00000646369.1:ENST00000643977.1:ENST00000647413.1:ENST00000644524.1:ENST00000645305.1:ENST00000643297.1:ENST00000450969.6:ENST00000642315.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	13	105	2	1.22487	1.3933049999999998	1.56174	0.0561181	0.039921	0.18407	0.143115
chr17	78224052	78224151	6682273	0	+	0.383838	(0.378,0.408]	chr17	652767	5	UTR3	UTR3:EXON_MRNA	BIRC5	ENSG00000089685.15	ENST00000301633.8:ENST00000350051.8:ENST00000374948.6	protein_coding	protein_coding	protein_coding	protein_coding	68	441	2	1.31264	1.3932950000000002	1.47395	0.00779854	0.00660939	0.0787942	0.0703181
chr6	13677907	13678007	3058886	0	-	0.44	(0.408,0.44]	chr6	284542	187	INTRON	INTRON	RANBP9	ENSG00000010017.13	ENST00000011619.6	protein_coding	protein_coding	protein_coding	protein_coding	13	79	2	1.24846	1.39329	1.53812	0.0501609	0.0421865	0.161744	0.156383
chr14	101794636	101794734	5818826	0	+	0.367347	(0.35,0.378]	chr14	551829	49	INTRON	INTRON	PPP2R5C	ENSG00000078304.20	ENST00000694906.1:ENST00000422945.6:ENST00000554442.5:ENST00000556068.5:ENST00000328724.9:ENST00000554504.1:ENST00000553890.1:ENST00000553554.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	14	90	2	1.10732	1.3932250000000002	1.67913	0.0619709	0.0345494	0.193945	0.13657
chr5	139308427	139308527	2499529	0	+	0.29	(0.28,0.32]	chr5	238920	1	SS5_PROX	SS5_PROX:INTRON	MATR3	ENSG00000280987.4:ENSG00000015479.20	ENST00000509990.5:ENST00000506147.5:ENST00000512107.5:ENST00000361059.7:ENST00000394800.6:ENST00000502929.5:ENST00000504203.5:ENST00000509644.5:ENST00000512876.5:ENST00000513678.5:ENST00000513121.1:ENST00000504045.5:ENST00000504311.5:ENST00000502499.5:ENST00000510056.5:ENST00000511249.5:ENST00000394805.8:ENST00000507860.1:ENST00000509918.5:ENST00000503811.5:ENST00000511978.5:ENST00000618441.5:ENST00000514528.5:ENST00000504643.5:ENST00000515833.2:ENST00000514402.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	14	100	2	1.10188	1.392985	1.68409	0.0615396	0.0548665	0.193423	0.165463
chr1	23310255	23310354	399239	0	-	0.323232	(0.32,0.35]	chr1	47830	39	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	HNRNPR	ENSG00000125944.21	ENST00000641107.1:ENST00000478691.5:ENST00000302271.11:ENST00000374616.7:ENST00000476660.1:ENST00000374612.5:ENST00000675048.1:ENST00000606561.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	34	254	2	1.16993	1.39245	1.61497	0.0433856	0.00398738	0.148115	0.057767
chr7	119745215	119745315	3628790	0	-	0.29	(0.28,0.32]	chr7	337319	399	INTRON	INTRON	LINC02476	ENSG00000225546.6	ENST00000660268.1:ENST00000431071.5	lncRNA	lncRNA	lncRNA	lncRNA	22	181	2	1.29361	1.39197	1.49033	0.0398529	0.0153465	0.143072	0.108569
chr5	171389297	171389381	2546578	0	+	0.285714	(0.28,0.32]	chr5	243080	1	INTRON	INTRON	NPM1	ENSG00000181163.14	ENST00000517671.5:ENST00000676613.1:ENST00000678186.1:ENST00000678267.1:ENST00000677297.1:ENST00000521672.6:ENST00000679190.1:ENST00000677467.1:ENST00000678280.1:ENST00000676625.1:ENST00000679006.1:ENST00000351986.10:ENST00000676504.1:ENST00000676589.1:ENST00000677357.1:ENST00000679233.1:ENST00000296930.10:ENST00000393820.2:ENST00000521260.2:ENST00000518587.2:ENST00000678774.1:ENST00000521710.2:ENST00000523339.1:ENST00000677600.1:ENST00000677741.1:ENST00000523622.1:ENST00000677325.1:ENST00000677672.1:ENST00000677907.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	16	133	2	1.21788	1.391345	1.56481	0.0505719	0.0339805	0.156383	0.146815
chr7	12400563	12400663	3485408	0	-	0.36	(0.35,0.378]	chr7	325970	64	INTRON	INTRON	VWDE	ENSG00000146530.15	ENST00000275358.8:ENST00000452576.6:ENST00000521169.5:ENST00000326715.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	14	101	2	1.25085	1.39117	1.53149	0.0565857	0.0256206	0.184867	0.120376
chr9	131157085	131157185	4215950	0	+	0.38	(0.378,0.408]	chr9	386591	48	INTRON	INTRON	NUP214	ENSG00000126883.19	ENST00000695497.1:ENST00000695498.1:ENST00000695496.1:ENST00000695495.1:ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000651022.1:ENST00000525980.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	23	152	2	1.18618	1.390935	1.59569	0.048354	0.00716165	0.15348	0.0756118
chr17	1400166	1400222	6699610	0	-	0.642857	(0.57,1]	chr17	655555	2	UTR5	UTR5:EXON_MRNA	YWHAE	ENSG00000108953.17	ENST00000264335.13:ENST00000571732.5:ENST00000573026.1:ENST00000573196.5:ENST00000575977.1:ENST00000486241.1:ENST00000489287.1:ENST00000576854.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	27	86	2	0.976782	1.3907859999999999	1.80479	0.0590664	0.00213355	0.189982	0.041773
chr1	100288802	100288902	172502	0	+	0.41	(0.408,0.44]	chr1	18774	12	INTRON	INTRON	RTCA	ENSG00000137996.13	ENST00000370128.9:ENST00000260563.4	protein_coding	protein_coding	protein_coding	protein_coding	11	66	2	1.24871	1.39067	1.53263	0.0733439	0.0481368	0.190051	0.171625
chr12	110286564	110286663	5226151	0	+	0.353535	(0.35,0.378]	chr12	495234	34	INTRON	INTRON	ATP2A2	ENSG00000174437.18	ENST00000552636.2:ENST00000308664.10:ENST00000539276.7:ENST00000377685.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	81	2	1.33062	1.38998	1.44934	0.0658369	0.0374591	0.181518	0.156024
chr3	6515161	6515261	1356392	0	+	0.46	(0.44,0.476]	chr3	142508	20	INTRON	INTRON	ENSG00000189229	ENSG00000189229.12	ENST00000660158.1:ENST00000433639.1:ENST00000655754.1:ENST00000653839.1:ENST00000662846.1:ENST00000659876.1:ENST00000414438.2:ENST00000658468.1:ENST00000414603.1:ENST00000669512.1:ENST00000667028.1:ENST00000655541.1:ENST00000668643.1:ENST00000671568.1:ENST00000671036.1:ENST00000669798.1:ENST00000655753.1:ENST00000655856.1:ENST00000658398.1:ENST00000661518.1:ENST00000661279.1:ENST00000655495.1:ENST00000663041.1:ENST00000659827.1:ENST00000667716.1:ENST00000662508.1:ENST00000668416.1:ENST00000658133.1:ENST00000659651.1:ENST00000342990.4:ENST00000660054.1:ENST00000671370.1	lncRNA	lncRNA	lncRNA	lncRNA	30	192	2	1.38039	1.389885	1.39938	0.014969	0.0145468	0.107688	0.0979479
chr7	148844374	148844474	3670361	0	-	0.43	(0.408,0.44]	chr7	340616	70	INTRON	INTRON	EZH2	ENSG00000106462.12	ENST00000683292.1:ENST00000320356.7:ENST00000492143.5:ENST00000478654.5:ENST00000350995.6:ENST00000460911.5:ENST00000683744.1:ENST00000682317.1:ENST00000682263.1:ENST00000684300.1:ENST00000476773.5:ENST00000483967.5:ENST00000498186.5:ENST00000483012.1:ENST00000682401.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	71	2	1.35739	1.389205	1.42102	0.063317	0.0389354	0.177047	0.160836
chr12	121330794	121330886	5436962	0	-	0.336957	(0.32,0.35]	chr12	519892	2	UTR5	UTR5:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ANAPC5	ENSG00000089053.13	ENST00000261819.8:ENST00000535641.5:ENST00000541887.5:ENST00000534976.5:ENST00000441917.6:ENST00000539079.5:ENST00000544314.5:ENST00000535482.1:ENST00000545218.5:ENST00000535472.5:ENST00000538334.1:ENST00000538223.1:ENST00000539612.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	15	102	2	1.13462	1.389075	1.64353	0.0533237	0.0398512	0.179876	0.143072
chr22	19113842	19113942	7551929	0	-	0.5	(0.476,0.515]	chr22	771903	240	INTRON	INTRON	DGCR2	ENSG00000070413.20	ENST00000537045.5:ENST00000545799.5:ENST00000263196.12:ENST00000389262.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	76	2	1.16414	1.38869	1.61324	0.0758174	0.026684	0.194479	0.134419
chr2	15515448	15515548	1072703	0	-	0.49	(0.476,0.515]	chr2	114441	37	INTRON	INTRON	NBAS	ENSG00000151779.13	ENST00000281513.10	protein_coding	protein_coding	protein_coding	protein_coding	25	155	2	1.35186	1.388605	1.42535	0.0286644	0.0113435	0.127066	0.0950265
chr7	143306626	143306723	3441482	0	+	0.329897	(0.32,0.35]	chr7	320950	17	UTR3	UTR3:EXON_MRNA	CASP2	ENSG00000106144.20	ENST00000619992.4:ENST00000310447.10	protein_coding	protein_coding	protein_coding	protein_coding	30	228	2	1.29222	1.3884349999999999	1.48465	0.0222888	0.0136676	0.124339	0.0949306
chr16	66721965	66722062	6501922	0	-	0.278351	[0,0.28]	chr16	628974	12	UTR3	UTR3:EXON_MRNA	DYNC1LI2	ENSG00000135720.13	ENST00000258198.7	protein_coding	protein_coding	protein_coding	protein_coding	14	132	2	1.29677	1.38835	1.47993	0.0741215	0.026411	0.191297	0.133676
chr17	81843537	81843631	6849928	0	-	0.617021	(0.57,1]	chr17	678313	5	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	P4HB	ENSG00000185624.16	ENST00000680083.1:ENST00000680416.1:ENST00000575069.6:ENST00000681030.1:ENST00000680884.1:ENST00000681161.1:ENST00000681515.1:ENST00000679470.1:ENST00000571617.2:ENST00000679688.1:ENST00000680226.1:ENST00000571507.6:ENST00000680400.1:ENST00000574914.2:ENST00000331483.9:ENST00000680914.1:ENST00000680593.1:ENST00000681420.1:ENST00000681693.1:ENST00000576390.6:ENST00000681835.1:ENST00000681954.1:ENST00000681259.1:ENST00000681566.1:ENST00000680076.1:ENST00000680105.1:ENST00000680368.1:ENST00000474712.2:ENST00000473021.2:ENST00000681872.1:ENST00000484286.2:ENST00000466567.3:ENST00000679396.1:ENST00000415593.6:ENST00000679889.1:ENST00000681571.1:ENST00000680719.1:ENST00000680191.1:ENST00000680547.1:ENST00000680799.1:ENST00000680208.1:ENST00000679439.1:ENST00000439918.7:ENST00000472244.6:ENST00000681031.1:ENST00000680846.1:ENST00000681068.1:ENST00000477607.7:ENST00000679366.1:ENST00000681020.1:ENST00000681614.1:ENST00000681485.1:ENST00000679628.1:ENST00000476482.2:ENST00000679455.1:ENST00000680259.1:ENST00000680559.1:ENST00000680909.1:ENST00000681760.1:ENST00000681933.1:ENST00000570907.6:ENST00000680732.1:ENST00000680838.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	39	122	2	1.3806	1.3881999999999999	1.3958	0.0124911	0.00483401	0.0923643	0.0640618
chr4	55422915	55423014	1960869	0	+	0.40404	(0.378,0.408]	chr4	196577	44	INTRON	INTRON	TMEM165	ENSG00000134851.13	ENST00000381334.10:ENST00000506198.5:ENST00000508404.5:ENST00000514904.5:ENST00000508561.5:ENST00000608091.1:ENST00000509575.1:ENST00000506103.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	16	99	2	1.13008	1.38808	1.64608	0.0517704	0.0269107	0.176696	0.123442
chr17	32378594	32378694	6598281	0	+	0.36	(0.35,0.378]	chr17	641948	53	UTR3	UTR3:EXON_MRNA	ZNF207	ENSG00000010244.19	ENST00000394670.9:ENST00000577908.5:ENST00000581531.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	15	106	2	1.32191	1.3879199999999998	1.45393	0.0437383	0.0289548	0.14901	0.140852
chrX	154799893	154799993	7915557	0	-	0.51	(0.476,0.515]	chrX	806177	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	MPP1	ENSG00000130830.15	ENST00000369534.8:ENST00000413259.7:ENST00000439370.5:ENST00000393531.5:ENST00000453245.5:ENST00000494170.1:ENST00000393529.5:ENST00000475943.5:ENST00000428488.1:ENST00000417435.5:ENST00000369531.1:ENST00000471821.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	70	2	1.36967	1.3877	1.40573	0.0605132	0.0410362	0.171085	0.161534
chr20	3918170	3918270	7227194	0	+	0.32	(0.28,0.32]	chr20	734517	1	SS3_PROX	SS3_PROX:INTRON	PANK2	ENSG00000125779.24	ENST00000497424.5:ENST00000316562.9:ENST00000495692.5:ENST00000610179.7:ENST00000643504.2:ENST00000336066.8:ENST00000646394.1:ENST00000621507.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	98	2	1.29464	1.387565	1.48049	0.0520475	0.0503127	0.176923	0.156383
chr20	43461360	43461459	7275418	0	+	0.262626	[0,0.28]	chr20	739619	4	UTR3	UTR3:EXON_MRNA:INTRON	SRSF6	ENSG00000124193.16	ENST00000662078.1:ENST00000668808.1:ENST00000670741.1:ENST00000244020.5	protein_coding	protein_coding	protein_coding	protein_coding	43	404	2	1.24472	1.3875600000000001	1.5304	0.0227567	0.0135444	0.125197	0.0949306
chr21	38103731	38103831	7463923	0	-	0.33	(0.32,0.35]	chr21	760303	40	INTRON	INTRON	DSCR4	ENSG00000184029.9	ENST00000398948.5:ENST00000328264.7:ENST00000482032.1	lncRNA	lncRNA	lncRNA	lncRNA	27	200	2	1.29133	1.3874	1.48347	0.0344078	0.00991919	0.136035	0.0877296
chr21	33450526	33450623	7440676	0	-	0.340206	(0.32,0.35]	chr21	759328	19	UTR3	UTR3:EXON_MRNA	TMEM50B	ENSG00000142188.17	ENST00000420455.5:ENST00000542230.7:ENST00000441128.5:ENST00000442441.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	16	120	2	1.20134	1.387345	1.57335	0.0737029	0.0133954	0.190643	0.101027
chr2	55008486	55008586	1120984	0	-	0.41	(0.408,0.44]	chr2	120142	204	INTRON	INTRON	RTN4	ENSG00000115310.19	ENST00000394609.6:ENST00000404909.5:ENST00000394611.6:ENST00000317610.11:ENST00000357732.8:ENST00000337526.11:ENST00000357376.7:ENST00000405240.5:ENST00000438462.1	protein_coding	protein_coding	protein_coding	protein_coding	13	74	2	1.13202	1.38632	1.64062	0.0559219	0.0557275	0.18407	0.165463
chr12	110295099	110295198	5226238	0	+	0.40404	(0.378,0.408]	chr12	495240	26	INTRON	INTRON	ATP2A2	ENSG00000174437.18	ENST00000552636.2:ENST00000308664.10:ENST00000539276.7:ENST00000377685.9:ENST00000548169.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	28	168	2	1.11959	1.38622	1.65285	0.0316017	0.0131154	0.144402	0.0936344
chr5	75345573	75345658	2390922	0	+	0.435294	(0.408,0.44]	chr5	230923	1	CDS	CDS:UTR3:EXON_MRNA	HMGCR	ENSG00000113161.17	ENST00000511206.5:ENST00000679456.1:ENST00000680160.1:ENST00000287936.9:ENST00000681567.1:ENST00000343975.9:ENST00000680940.1:ENST00000681271.1:ENST00000681410.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	14	83	2	1.19131	1.385785	1.58026	0.0458022	0.0444624	0.164831	0.149888
chr16	89479451	89479551	6543491	0	-	0.43	(0.408,0.44]	chr16	634281	478	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	16	103	2	1.15262	1.3856	1.61858	0.0580417	0.0175559	0.188651	0.105143
chr11	57790505	57790600	4793420	0	+	0.4	(0.378,0.408]	chr11	443728	10	INTRON	INTRON	ENSG00000288534:CTNND1	ENSG00000288534.1:ENSG00000198561.16	ENST00000673781.1:ENST00000673810.1:ENST00000674116.1:ENST00000674060.1:ENST00000524630.5:ENST00000529919.5:ENST00000533189.1:ENST00000682741.1:ENST00000358694.10:ENST00000361332.8:ENST00000361391.10:ENST00000361796.9:ENST00000415361.6:ENST00000426142.6:ENST00000428599.6:ENST00000525902.5:ENST00000526357.5:ENST00000526772.5:ENST00000527467.5:ENST00000528232.5:ENST00000528621.5:ENST00000529526.5:ENST00000529873.5:ENST00000529986.5:ENST00000530094.5:ENST00000530748.5:ENST00000531014.5:ENST00000532245.5:ENST00000532463.5:ENST00000532649.5:ENST00000532787.5:ENST00000532844.5:ENST00000533667.5:ENST00000534579.5:ENST00000399050.10:ENST00000526938.5:ENST00000531007.2:ENST00000674015.1:ENST00000673826.1:ENST00000673683.1:ENST00000674106.1:ENST00000530068.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	16	106	2	1.22299	1.38518	1.54737	0.0578508	0.0164367	0.167723	0.110019
chr10	74007453	74007553	4454594	0	+	0.48	(0.476,0.515]	chr10	411385	87	INTRON	INTRON	VCL	ENSG00000035403.18	ENST00000623461.3:ENST00000372755.7:ENST00000624354.3:ENST00000211998.10:ENST00000478896.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	28	175	2	1.22749	1.38498	1.54247	0.0301278	0.00803055	0.129371	0.0803474
chr9	131206293	131206392	4216465	0	+	0.464646	(0.44,0.476]	chr9	386673	42	INTRON	INTRON	NUP214	ENSG00000126883.19	ENST00000695497.1:ENST00000695498.1:ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000524578.6:ENST00000453861.6:ENST00000483497.6:ENST00000695500.1:ENST00000650694.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	21	132	2	1.16846	1.38482	1.60118	0.0459416	0.0107718	0.149888	0.0920575
chr7	64976233	64976332	3537387	0	-	0.434343	(0.408,0.44]	chr7	329926	46	UTR3	UTR3:EXON_MRNA	ZNF117	ENSG00000152926.16	ENST00000282869.11:ENST00000620222.4	protein_coding	protein_coding	protein_coding	protein_coding	24	152	2	1.14303	1.3847749999999999	1.62652	0.0472331	0.00694581	0.152695	0.0754576
chr9	131180399	131180498	4216193	0	+	0.282828	(0.28,0.32]	chr9	386630	16	INTRON	INTRON	NUP214	ENSG00000126883.19	ENST00000695497.1:ENST00000695498.1:ENST00000695496.1:ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000525980.5:ENST00000526346.5:ENST00000531929.5:ENST00000651334.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	14	118	2	1.26409	1.38387	1.50365	0.0570949	0.031932	0.186331	0.13174
chr11	118496992	118497086	4872755	0	+	0.553191	(0.515,0.57]	chr11	455091	3	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	KMT2A	ENSG00000118058.24	ENST00000389506.10:ENST00000534358.8:ENST00000691053.1:ENST00000649699.1:ENST00000528278.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	11	60	2	1.27162	1.38357	1.49552	0.0626162	0.0385038	0.175915	0.159277
chr11	33708939	33709037	4941053	0	-	0.336735	(0.32,0.35]	chr11	462894	61	UTR3	UTR3:EXON_MRNA	CD59	ENSG00000085063.17	ENST00000642928.2:ENST00000651785.1:ENST00000652678.1:ENST00000395850.9:ENST00000651485.1:ENST00000528987.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	68	2	1.37958	1.3826100000000001	1.38564	0.0793006	0.0577841	0.199711	0.188484
chr5	66154291	66154389	2372589	0	+	0.316327	(0.28,0.32]	chr5	228655	3	INTRON	INTRON	SREK1	ENSG00000153914.16	ENST00000521691.5:ENST00000612404.4:ENST00000334121.11:ENST00000520953.5:ENST00000522912.5:ENST00000524111.5:ENST00000380918.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	95	2	1.35798	1.38248	1.40698	0.0778529	0.0366052	0.196685	0.154143
chr17	1357917	1358016	6699178	0	-	0.353535	(0.35,0.378]	chr17	655527	32	INTRON	INTRON	YWHAE	ENSG00000108953.17	ENST00000264335.13:ENST00000466227.6:ENST00000571732.5:ENST00000573026.1:ENST00000496706.1:ENST00000573196.5:ENST00000575977.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	20	136	2	1.35143	1.381945	1.41246	0.0325745	0.0213712	0.133687	0.123719
chr7	2380383	2380474	3269903	0	+	0.516484	(0.515,0.57]	chr7	303877	3	UTR3	UTR3:EXON_MRNA	EIF3B	ENSG00000106263.19	ENST00000360876.9:ENST00000397011.2:ENST00000475415.5:ENST00000468611.5:ENST00000465670.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	30	155	2	0.953494	1.3817519999999999	1.81001	0.0578263	0.00298998	0.188608	0.0491491
chr3	197952812	197952899	1598758	0	+	0.413793	(0.408,0.44]	chr3	165712	2	SS5_PROX	SS5_PROX:INTRON	RPL35A	ENSG00000182899.17	ENST00000647248.2:ENST00000448864.6:ENST00000485439.5:ENST00000642387.1:ENST00000329092.12:ENST00000429437.5:ENST00000442341.5:ENST00000439255.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	27	175	2	1.18603	1.38164	1.57725	0.0330971	0.00880548	0.145735	0.0790863
chr19	57837229	57837328	7105900	0	+	0.414141	(0.408,0.44]	chr19	713206	63	INTRON	INTRON	ENSG00000268750:ZNF587B	ENSG00000268750.7:ENSG00000269343.9	ENST00000597134.5:ENST00000651253.2:ENST00000596498.2:ENST00000593873.6:ENST00000603271.1:ENST00000594328.1:ENST00000598031.1:ENST00000442832.8:ENST00000594901.2:ENST00000604231.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	66	2	1.32496	1.38144	1.43792	0.062843	0.0566224	0.196433	0.167389
chr2	15537149	15537247	1072921	0	-	0.418367	(0.408,0.44]	chr2	114453	2	INTRON	INTRON	NBAS	ENSG00000151779.13	ENST00000281513.10	protein_coding	protein_coding	protein_coding	protein_coding	19	118	2	1.35901	1.38102	1.40303	0.0428833	0.0164825	0.148082	0.110291
chr7	139060634	139060733	3655920	0	-	0.343434	(0.32,0.35]	chr7	339404	4	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	ZC3HAV1	ENSG00000105939.14	ENST00000242351.10:ENST00000464606.5:ENST00000680309.1:ENST00000471652.1:ENST00000460845.5	protein_coding	protein_coding	protein_coding	protein_coding	29	216	2	1.21647	1.3805649999999998	1.54466	0.0282593	0.012472	0.137721	0.0922984
chr12	67312928	67313027	5160953	0	+	0.30303	(0.28,0.32]	chr12	488539	2	UTR3	UTR3:EXON_MRNA	CAND1	ENSG00000111530.13	ENST00000545606.6:ENST00000544619.1	protein_coding	protein_coding	protein_coding	protein_coding	11	88	2	1.35386	1.38042	1.40698	0.0778529	0.0432643	0.196685	0.162255
chr3	10151523	10151621	1363215	0	+	0.336735	(0.32,0.35]	chr3	143688	17	UTR3	UTR3:EXON_MRNA	VHL	ENSG00000134086.9	ENST00000696153.1:ENST00000256474.3:ENST00000696142.1:ENST00000345392.2:ENST00000696143.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	19	132	2	1.09876	1.38038	1.662	0.0519892	0.0214	0.176748	0.113959
chr3	196070895	196070995	1897437	0	-	0.45	(0.44,0.476]	chr3	189958	1	SS5_PROX	SS5_PROX:INTRON	TFRC	ENSG00000072274.13	ENST00000420415.5:ENST00000360110.9:ENST00000392396.7	protein_coding	protein_coding	protein_coding	protein_coding	80	479	2	1.25055	1.37994	1.50933	0.00870682	0.00502884	0.0844834	0.0619949
chr3	157157680	157157778	1844679	0	-	0.346939	(0.32,0.35]	chr3	185666	2	INTRON	INTRON	CCNL1	ENSG00000163660.12	ENST00000461804.5:ENST00000295926.8:ENST00000631619.1:ENST00000475298.5:ENST00000470121.5:ENST00000476367.5:ENST00000477127.5:ENST00000478454.5:ENST00000479596.5:ENST00000465947.5:ENST00000467081.1:ENST00000464575.1:ENST00000295925.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	95	2	1.26251	1.379915	1.49732	0.0481909	0.0455974	0.171808	0.149888
chr12	4301394	4301493	5067692	0	+	0.353535	(0.35,0.378]	chr12	478308	15	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	CCND2	ENSG00000118971.9	ENST00000676411.1:ENST00000676279.1:ENST00000261254.8:ENST00000675880.1:ENST00000675468.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	14	97	2	1.2369	1.379575	1.52225	0.0511272	0.0322499	0.176696	0.132695
chr5	134156532	134156632	2726145	0	-	0.32	(0.28,0.32]	chr5	256474	77	UTR3	UTR3:EXON_MRNA	SKP1	ENSG00000113558.19	ENST00000353411.11	protein_coding	protein_coding	protein_coding	protein_coding	12	100	2	1.34841	1.37947	1.41053	0.0525144	0.0501096	0.178179	0.156383
chr22	21615660	21615759	7482186	0	+	0.464646	(0.44,0.476]	chr22	763251	6	INTRON	INTRON	UBE2L3	ENSG00000185651.16	ENST00000458578.6:ENST00000545681.2:ENST00000696046.1:ENST00000342192.9:ENST00000496722.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	63	2	1.37831	1.37935	1.38039	0.0762718	0.0447298	0.195539	0.163255
chr9	131178810	131178910	4216177	0	+	0.43	(0.408,0.44]	chr9	386629	4	SS5_PROX	SS5_PROX:INTRON	NUP214	ENSG00000126883.19	ENST00000695497.1:ENST00000695498.1:ENST00000695496.1:ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000525980.5:ENST00000526346.5:ENST00000531929.5:ENST00000651334.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	17	108	2	1.30866	1.37935	1.45004	0.0434157	0.020059	0.14821	0.121028
chr9	109084606	109084705	4312245	0	-	0.414141	(0.408,0.44]	chr9	396356	33	INTRON	INTRON	TMEM245	ENSG00000106771.13	ENST00000374586.8:ENST00000413712.6:ENST00000491854.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	76	2	1.36246	1.3793	1.39614	0.0567929	0.0386802	0.167723	0.159946
chr16	31185942	31186037	6340618	0	+	0.368421	(0.35,0.378]	chr16	608337	9	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	FUS	ENSG00000089280.19	ENST00000566605.5:ENST00000254108.12:ENST00000380244.7:ENST00000487509.6:ENST00000568685.1:ENST00000570090.1:ENST00000474990.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	38	245	2	0.914248	1.379294	1.84434	0.0689669	0.00261488	0.184298	0.0470772
chr5	139295595	139295694	2499398	0	+	0.313131	(0.28,0.32]	chr5	238911	2	INTRON	INTRON	MATR3	ENSG00000280987.4:ENSG00000015479.20	ENST00000509990.5:ENST00000506147.5:ENST00000512107.5:ENST00000361059.7:ENST00000394800.6:ENST00000502929.5:ENST00000504203.5:ENST00000514694.5:ENST00000509644.5:ENST00000505016.2:ENST00000502394.1:ENST00000512876.5:ENST00000513678.5:ENST00000513121.1:ENST00000504045.5:ENST00000504311.5:ENST00000502499.5:ENST00000510056.5:ENST00000511249.5:ENST00000394805.8:ENST00000507860.1:ENST00000509918.5:ENST00000503811.5:ENST00000511978.5:ENST00000618441.5:ENST00000508689.1:ENST00000514528.5:ENST00000504643.5:ENST00000514488.1:ENST00000503340.1:ENST00000504023.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	10	81	2	1.31424	1.37852	1.4428	0.0712927	0.0580847	0.188651	0.185716
chr12	22632668	22632768	5094817	0	+	0.44	(0.408,0.44]	chr12	481224	66	INTRON	INTRON	ETNK1	ENSG00000139163.16	ENST00000671733.1:ENST00000335148.8:ENST00000672951.1:ENST00000266517.9:ENST00000538218.2:ENST00000673496.1:ENST00000673406.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	16	95	2	1.11484	1.378255	1.64167	0.0540395	0.0266976	0.181713	0.123349
chr17	75217024	75217118	6674379	0	+	0.531915	(0.515,0.57]	chr17	651375	8	INTRON	INTRON	NUP85	ENSG00000125450.11	ENST00000245544.9:ENST00000583948.5:ENST00000579324.5:ENST00000449421.6:ENST00000581104.5:ENST00000579298.5:ENST00000578830.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	11	60	2	1.31383	1.3780999999999999	1.44237	0.0552039	0.0456196	0.165463	0.164236
chr1	179863490	179863590	593324	0	-	0.45	(0.44,0.476]	chr1	71105	46	UTR3	UTR3:EXON_MRNA:INTRON	TOR1AIP2	ENSG00000169905.13	ENST00000367612.7:ENST00000609928.6:ENST00000482587.5	protein_coding	protein_coding	protein_coding	protein_coding	17	107	2	1.28097	1.3779599999999999	1.47495	0.0470611	0.0181844	0.152188	0.115087
chr7	121180232	121180332	3395571	0	+	0.39	(0.378,0.408]	chr7	317781	302	INTRON	INTRON	CPED1	ENSG00000106034.18	ENST00000310396.10:ENST00000450913.6:ENST00000423795.5:ENST00000466055.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	61	2	1.29877	1.377945	1.45712	0.0751206	0.0597975	0.19367	0.189982
chr8	60240664	60240764	3956493	0	-	0.36	(0.35,0.378]	chr8	362980	79	INTRON	INTRON	CA8	ENSG00000178538.10	ENST00000317995.5:ENST00000524872.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	70	2	1.16727	1.377945	1.58862	0.078488	0.0615516	0.198025	0.193423
chr6	135204248	135204347	2962403	0	+	0.434343	(0.408,0.44]	chr6	278661	4	INTRON	INTRON	MYB	ENSG00000118513.20	ENST00000341911.10:ENST00000442647.7:ENST00000316528.12:ENST00000616088.4:ENST00000339290.9:ENST00000367812.6:ENST00000463282.6:ENST00000525477.5:ENST00000533837.5:ENST00000367814.8:ENST00000525369.5:ENST00000438901.6:ENST00000525514.5:ENST00000526320.5:ENST00000526889.5:ENST00000529586.5:ENST00000531519.5:ENST00000533808.5:ENST00000528343.5:ENST00000524588.5:ENST00000525002.5:ENST00000525940.5:ENST00000526187.5:ENST00000526565.5:ENST00000528015.5:ENST00000528140.5:ENST00000528345.5:ENST00000528774.5:ENST00000529262.5:ENST00000531634.5:ENST00000531737.5:ENST00000533384.5:ENST00000533624.5:ENST00000534044.5:ENST00000534121.5:ENST00000531845.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	59	2	1.31757	1.377745	1.43792	0.0705974	0.062843	0.196433	0.184528
chr5	179622614	179622692	2779773	0	-	0.628205	(0.57,1]	chr5	262334	2	SS5_PROX	SS5_PROX:INTRON	HNRNPH1	ENSG00000169045.17	ENST00000329433.11:ENST00000393432.9:ENST00000356731.9:ENST00000442819.6:ENST00000514332.5:ENST00000510411.5:ENST00000510678.5:ENST00000514731.5:ENST00000503105.5:ENST00000504779.6:ENST00000508103.5:ENST00000506721.5:ENST00000523137.5:ENST00000505811.5:ENST00000510431.5:ENST00000519056.5:ENST00000504348.5:ENST00000513225.5:ENST00000524180.5:ENST00000513972.5:ENST00000519707.5:ENST00000519455.5:ENST00000515158.5:ENST00000521116.5:ENST00000505087.1:ENST00000515714.5:ENST00000512273.5:ENST00000503664.1:ENST00000630639.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	13	42	2	1.28607	1.3776899999999999	1.46931	0.0504184	0.0325674	0.174922	0.133687
chr16	70257333	70257433	6510151	0	-	0.49	(0.476,0.515]	chr16	630524	16	EXON_MRNA	EXON_MRNA:INTRON	AARS1	ENSG00000090861.17	ENST00000674963.1:ENST00000675643.1:ENST00000675917.1:ENST00000674691.1:ENST00000261772.13:ENST00000675569.1:ENST00000676209.1:ENST00000676211.1:ENST00000676040.1:ENST00000675953.1:ENST00000675691.1:ENST00000676004.1:ENST00000675270.1:ENST00000675403.1:ENST00000676212.1:ENST00000675045.1:ENST00000675035.1:ENST00000676168.1:ENST00000674652.1:ENST00000675133.1:ENST00000675120.1:ENST00000674811.1:ENST00000674512.1:ENST00000675853.1:ENST00000565361.3:ENST00000676247.1:ENST00000674848.1:ENST00000674962.1:ENST00000675371.1:ENST00000675986.1:ENST00000674768.1:ENST00000675297.1:ENST00000675751.1:ENST00000564359.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	33	196	2	1.2697	1.37754	1.48538	0.0153709	0.0151412	0.108535	0.100475
chr21	46198361	46198460	7470558	0	-	0.242424	[0,0.28]	chr21	761464	17	INTRON	INTRON	LSS	ENSG00000160285.15	ENST00000356396.8:ENST00000397728.8:ENST00000457828.6:ENST00000522411.5	protein_coding	protein_coding	protein_coding	protein_coding	12	112	2	1.34837	1.3771300000000002	1.40589	0.0666282	0.0470905	0.182954	0.168569
chr16	23850767	23850866	6323906	0	+	0.333333	(0.32,0.35]	chr16	605693	130	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000498058.1:ENST00000645517.1:ENST00000498739.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	15	111	2	1.24518	1.3765749999999999	1.50797	0.0754551	0.0173844	0.194427	0.112484
chr7	100689178	100689272	3587499	0	-	0.56383	(0.515,0.57]	chr7	334640	11	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GIGYF1	ENSG00000146830.11	ENST00000678049.1:ENST00000646601.1:ENST00000275732.5:ENST00000643385.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	70	2	1.22131	1.376555	1.5318	0.0614604	0.0258209	0.173483	0.133676
chr12	31971252	31971351	5106722	0	+	0.494949	(0.476,0.515]	chr12	482333	5	INTRON	INTRON	RESF1	ENSG00000174718.12	ENST00000541981.5:ENST00000540924.5:ENST00000312561.9:ENST00000535596.5:ENST00000397578.7:ENST00000381054.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	75	2	1.36967	1.3763299999999998	1.38299	0.0605132	0.0361854	0.171085	0.152746
chr3	196073529	196073629	1897467	0	-	0.41	(0.408,0.44]	chr3	189969	2	SS5_PROX	SS5_PROX:INTRON	TFRC	ENSG00000072274.13	ENST00000420415.5:ENST00000360110.9:ENST00000392396.7:ENST00000421258.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	24	147	2	1.10951	1.375955	1.6424	0.0413969	0.0110644	0.161557	0.0873897
chr3	177023214	177023313	1870659	0	-	0.323232	(0.32,0.35]	chr3	187269	40	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	TBL1XR1	ENSG00000177565.18	ENST00000636864.1:ENST00000457928.7:ENST00000430069.5:ENST00000637659.1:ENST00000474363.1:ENST00000673974.1:ENST00000631253.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	13	97	2	1.24518	1.3756	1.50602	0.0754551	0.0248261	0.194427	0.132101
chr7	155303724	155303824	3451824	0	+	0.36	(0.35,0.378]	chr7	322629	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	INSIG1	ENSG00000186480.13	ENST00000344756.8:ENST00000340368.9:ENST00000342407.5:ENST00000476756.1	protein_coding	protein_coding	protein_coding	protein_coding	15	104	2	1.36085	1.375365	1.38988	0.0446772	0.0304557	0.149888	0.143385
chr17	41867412	41867511	6769765	0	-	0.373737	(0.35,0.378]	chr17	666417	6	UTR3	UTR3:EXON_MRNA	ACLY	ENSG00000131473.17	ENST00000590151.5:ENST00000352035.7:ENST00000353196.5:ENST00000537919.5	protein_coding	protein_coding	protein_coding	protein_coding	14	97	2	1.14833	1.375045	1.60176	0.0735802	0.0213692	0.190337	0.123719
chr17	4945733	4945816	6713061	0	-	0.60241	(0.57,1]	chr17	657983	2	UTR3	UTR3:EXON_MRNA	PFN1	ENSG00000108518.8	ENST00000225655.6:ENST00000574872.1	protein_coding	protein_coding	protein_coding	protein_coding	46	146	2	1.15782	1.37484	1.59186	0.018122	0.00186722	0.114853	0.0390476
chr16	219848	219948	6426092	0	-	0.27	[0,0.28]	chr16	617437	102	INTRON	INTRON	LUC7L	ENSG00000007392.17	ENST00000337351.8:ENST00000426094.5:ENST00000397783.5:ENST00000629543.2:ENST00000490762.5:ENST00000293872.13:ENST00000419516.5:ENST00000397780.5:ENST00000418978.5:ENST00000430864.5:ENST00000443357.5:ENST00000494366.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	23	210	2	1.31127	1.37463	1.43799	0.0345232	0.026794	0.136487	0.134913
chr5	43290239	43290338	2614189	0	-	0.333333	(0.32,0.35]	chr5	248475	29	UTR3	UTR3:EXON_MRNA	HMGCS1	ENSG00000112972.15	ENST00000325110.11:ENST00000433297.2	protein_coding	protein_coding	protein_coding	protein_coding	13	97	2	1.3612	1.3743400000000001	1.38748	0.0548037	0.0373731	0.165463	0.155878
chr19	2204655	2204753	6996587	0	+	0.530612	(0.515,0.57]	chr19	693473	15	INTRON	INTRON	DOT1L	ENSG00000104885.19	ENST00000398665.8:ENST00000686010.1	protein_coding	protein_coding	protein_coding	protein_coding	13	70	2	1.27738	1.374325	1.47127	0.0499863	0.0333563	0.17488	0.134145
chr16	24542384	24542483	6327683	0	+	0.383838	(0.378,0.408]	chr16	605824	12	INTRON	INTRON	RBBP6	ENSG00000122257.20	ENST00000564314.5:ENST00000567686.5:ENST00000568015.5:ENST00000319715.10:ENST00000452655.6:ENST00000381039.7:ENST00000646282.1:ENST00000348022.6	protein_coding	protein_coding	protein_coding	protein_coding	17	113	2	1.23968	1.374315	1.50895	0.043845	0.0224698	0.162255	0.116948
chr1	223758107	223758203	320723	0	+	0.479167	(0.476,0.515]	chr1	36914	6	EXON_LNCRNA	EXON_LNCRNA:INTRON	CAPN2	ENSG00000162909.18	ENST00000433674.6:ENST00000295006.6:ENST00000474026.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	15	94	2	1.36548	1.374255	1.38303	0.0390231	0.0323763	0.145026	0.143072
chr1	162593265	162593347	238644	0	+	0.280488	(0.28,0.32]	chr1	28746	3	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	UAP1:ENSG00000272574	ENSG00000117143.14:ENSG00000272574.1	ENST00000367925.6:ENST00000367926.9:ENST00000609669.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	12	97	2	1.35386	1.37412	1.39438	0.0635439	0.0432643	0.177272	0.162255
chr22	16604204	16604304	7473382	0	+	0.31	(0.28,0.32]	chr22	761972	16	INTRON	INTRON	TPTEP1:ENSG00000283633	ENSG00000100181.22:ENSG00000283633.1	ENST00000558085.6:ENST00000400593.6:ENST00000592918.5:ENST00000592107.5:ENST00000426585.5:ENST00000591299.1	lncRNA	lncRNA	lncRNA:transcribed_unprocessed_pseudogene	lncRNA:processed_transcript	19	155	2	1.34325	1.373965	1.40468	0.0335142	0.0299564	0.142135	0.134145
chr19	12943374	12943455	7022519	0	+	0.481481	(0.476,0.515]	chr19	698297	3	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	CALR	ENSG00000179218.15	ENST00000316448.10:ENST00000586967.2:ENST00000586760.2:ENST00000680816.1:ENST00000588454.6:ENST00000586803.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	18	113	2	1.08958	1.3738700000000001	1.65816	0.0750042	0.00845261	0.193401	0.0828542
chr13	106557731	106557831	5648827	0	-	0.25	[0,0.28]	chr13	538150	7	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	ARGLU1	ENSG00000134884.15	ENST00000400198.8:ENST00000472226.2:ENST00000375926.5:ENST00000360629.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	27	252	2	1.1377	1.37374	1.60978	0.0639752	0.00821838	0.177882	0.0812393
chr6	109366709	109366807	3185751	0	-	0.316327	(0.28,0.32]	chr6	296652	3	UTR3	UTR3:EXON_MRNA	CD164	ENSG00000135535.17	ENST00000310786.10:ENST00000413644.6:ENST00000504373.2:ENST00000415861.2:ENST00000324953.9:ENST00000275080.11	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	35	268	2	1.10287	1.37348	1.64409	0.0353529	0.0104923	0.150682	0.0856708
chr12	53479919	53480015	5143184	0	+	0.40625	(0.378,0.408]	chr12	485458	6	UTR3	UTR3:EXON_MRNA	PCBP2	ENSG00000197111.16	ENST00000546463.6:ENST00000437231.5:ENST00000447282.5:ENST00000455667.7:ENST00000547859.2	protein_coding	protein_coding	protein_coding	protein_coding	20	131	2	1.25855	1.373265	1.48798	0.0328382	0.0208913	0.145164	0.111827
chr17	35831740	35831838	6601319	0	+	0.459184	(0.44,0.476]	chr17	642440	4	EXON_MRNA	EXON_MRNA:INTRON	TAF15	ENSG00000270647.7	ENST00000605844.6:ENST00000603777.6:ENST00000604694.2:ENST00000689923.1:ENST00000603393.6:ENST00000685897.1:ENST00000603427.6:ENST00000604879.6:ENST00000604841.5:ENST00000603067.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	34	211	2	1.21783	1.3729749999999998	1.52812	0.0336829	0.00476514	0.134145	0.0636201
chr6	30616477	30616563	3077362	0	-	0.44186	(0.44,0.476]	chr6	286297	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	PPP1R10	ENSG00000204569.10	ENST00000376511.7:ENST00000484449.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	46	280	2	1.12048	1.372405	1.62433	0.0275164	0.00433095	0.123904	0.0600407
chr6	147725339	147725439	2991250	0	+	0.48	(0.476,0.515]	chr6	280167	325	INTRON	INTRON	ENSG00000227681	ENSG00000227681.5	ENST00000427015.1:ENST00000432506.5:ENST00000442094.5:ENST00000434985.1	lncRNA	lncRNA	lncRNA	lncRNA	11	70	2	1.30826	1.37235	1.43644	0.0587053	0.047372	0.169265	0.167915
chr14	102711994	102712091	5823735	0	+	0.443299	(0.44,0.476]	chr14	552522	6	INTRON	INTRON	RCOR1	ENSG00000089902.10	ENST00000262241.7:ENST00000558495.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	64	2	1.34221	1.3721649999999999	1.40212	0.0656882	0.0524678	0.181162	0.178047
chr17	63810262	63810345	6661343	0	+	0.457831	(0.44,0.476]	chr17	650012	1	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	DDX42	ENSG00000198231.14	ENST00000578681.5:ENST00000583590.5:ENST00000389924.7:ENST00000359353.9:ENST00000577940.6:ENST00000584010.5:ENST00000581477.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	64	2	1.34221	1.3721649999999999	1.40212	0.0656882	0.0524678	0.181162	0.178047
chr19	10659056	10659155	7013259	0	+	0.444444	(0.44,0.476]	chr19	696757	31	INTRON	INTRON	ILF3	ENSG00000129351.17	ENST00000449870.5:ENST00000587928.5:ENST00000407004.7:ENST00000589998.5:ENST00000589600.5:ENST00000589283.5:ENST00000590009.5:ENST00000593199.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	64	2	1.34221	1.3721649999999999	1.40212	0.0656882	0.0524678	0.181162	0.178047
chr1	12617635	12617731	379542	0	-	0.447917	(0.44,0.476]	chr1	44555	4	UTR5	UTR5:EXON_MRNA	DHRS3	ENSG00000162496.9	ENST00000616661.5	protein_coding	protein_coding	protein_coding	protein_coding	54	334	2	1.12023	1.37213	1.62403	0.0222885	0.00354168	0.124338	0.0529186
chr20	50920476	50920576	7355769	0	-	0.52	(0.515,0.57]	chr20	750105	13	INTRON	INTRON	ADNP	ENSG00000101126.18	ENST00000621696.5:ENST00000673732.1:ENST00000396029.8:ENST00000644386.1:ENST00000396032.8:ENST00000645081.1:ENST00000642364.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	29	156	2	1.27559	1.3721299999999998	1.46867	0.021734	0.00960447	0.123836	0.0822531
chr4	82835261	82835361	2179512	0	-	0.31	(0.28,0.32]	chr4	214267	39	INTRON	INTRON	SEC31A	ENSG00000138674.17	ENST00000395310.7:ENST00000513858.5:ENST00000348405.8:ENST00000503937.5:ENST00000448323.5:ENST00000311785.11:ENST00000509142.5:ENST00000443462.6:ENST00000500777.6:ENST00000505472.5:ENST00000355196.6:ENST00000508502.5:ENST00000264405.9:ENST00000505984.5:ENST00000511338.1:ENST00000515749.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	15	116	2	1.2359	1.371995	1.50809	0.0465667	0.0434195	0.162255	0.151518
chr6	133968654	133968754	2961911	0	+	0.48	(0.476,0.515]	chr6	278510	4	SS3_PROX	SS3_PROX:INTRON	TBPL1	ENSG00000028839.10	ENST00000613034.4:ENST00000416965.5:ENST00000457715.1:ENST00000367871.5:ENST00000237264.9:ENST00000367869.1	protein_coding	protein_coding	protein_coding	protein_coding	17	106	2	1.33548	1.371445	1.40741	0.0390508	0.0237793	0.143072	0.129075
chr6	31756492	31756591	2843660	0	+	0.292929	(0.28,0.32]	chr6	267818	25	INTRON	INTRON	MSH5:MSH5-SAPCD1	ENSG00000204410.16:ENSG00000255152.8	ENST00000375755.8:ENST00000375750.9:ENST00000650702.1:ENST00000493662.6:ENST00000375703.7:ENST00000375740.7:ENST00000423982.6:ENST00000463144.5:ENST00000450148.5:ENST00000468602.5:ENST00000468136.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	90	2	1.34841	1.3713950000000001	1.39438	0.0635439	0.0525144	0.178179	0.177272
chr17	30132928	30133028	6587551	0	+	0.45	(0.44,0.476]	chr17	640563	48	INTRON	INTRON	NSRP1	ENSG00000126653.18	ENST00000540900.7:ENST00000612959.4:ENST00000247026.10:ENST00000577289.6:ENST00000584154.5:ENST00000394826.8:ENST00000475652.5:ENST00000584317.5:ENST00000583301.5:ENST00000585881.5:ENST00000467446.6:ENST00000580103.6:ENST00000581048.5:ENST00000588614.1:ENST00000589608.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	12	75	2	1.36075	1.3713899999999999	1.38203	0.058781	0.0389168	0.167915	0.160783
chr19	34401818	34401917	7052875	0	+	0.525253	(0.515,0.57]	chr19	703434	19	UTR3	UTR3:EXON_MRNA	GPI	ENSG00000105220.17	ENST00000415930.8:ENST00000356487.11	protein_coding	protein_coding	protein_coding	protein_coding	30	169	2	1.19067	1.37122	1.55177	0.0363089	0.00510518	0.153241	0.0626539
chr3	42625802	42625901	1406230	0	+	0.333333	(0.32,0.35]	chr3	147675	39	INTRON	INTRON	NKTR	ENSG00000114857.19	ENST00000468735.6:ENST00000487466.5:ENST00000429888.5:ENST00000232978.13:ENST00000478488.1:ENST00000465584.5:ENST00000466553.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	17	125	2	1.14443	1.37107	1.59771	0.056351	0.0216336	0.184423	0.11491
chr7	149003701	149003793	3670787	0	-	0.695652	(0.57,1]	chr7	340645	8	UTR3	UTR3:EXON_MRNA	PDIA4	ENSG00000155660.11	ENST00000652332.1:ENST00000286091.9	protein_coding	protein_coding	protein_coding	protein_coding	13	42	2	1.2666	1.37066	1.47472	0.0788045	0.0206205	0.198736	0.122348
chr19	34401620	34401719	7052873	0	+	0.464646	(0.44,0.476]	chr19	703434	17	UTR3	UTR3:EXON_MRNA	GPI	ENSG00000105220.17	ENST00000415930.8:ENST00000356487.11	protein_coding	protein_coding	protein_coding	protein_coding	28	181	2	1.29224	1.370535	1.44883	0.0258679	0.0117932	0.133676	0.0896324
chr11	83157727	83157823	4840799	0	+	0.666667	(0.57,1]	chr11	451493	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	PCF11	ENSG00000165494.12	ENST00000298281.8:ENST00000530660.5:ENST00000690938.1:ENST00000530304.5:ENST00000533018.1:ENST00000624931.1	protein_coding	protein_coding	protein_coding	protein_coding:TEC	13	41	2	1.3671	1.37047	1.37384	0.0766386	0.0263884	0.196164	0.133676
chr11	83158591	83158687	4840808	0	+	0.322917	(0.32,0.35]	chr11	451493	11	EXON_MRNA	EXON_MRNA:INTRON	PCF11	ENSG00000165494.12	ENST00000298281.8:ENST00000530660.5:ENST00000690938.1:ENST00000530304.5:ENST00000533018.1:ENST00000624931.1	protein_coding	protein_coding	protein_coding	protein_coding:TEC	46	282	2	0.872386	1.370418	1.86845	0.0620821	0.00455255	0.194283	0.0595107
chr4	70937425	70937525	1970856	0	+	0.28	[0,0.28]	chr4	197571	345	INTRON	INTRON	MOB1B	ENSG00000173542.9	ENST00000502869.5:ENST00000509041.5:ENST00000309395.7:ENST00000396051.2:ENST00000511449.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	13	114	2	1.18694	1.3701150000000002	1.55329	0.0600846	0.058079	0.190759	0.167723
chr3	6573165	6573265	1356974	0	+	0.45	(0.44,0.476]	chr3	142512	145	INTRON	INTRON	ENSG00000189229	ENSG00000189229.12	ENST00000433639.1:ENST00000655754.1:ENST00000653839.1:ENST00000662846.1:ENST00000414438.2:ENST00000658468.1:ENST00000669512.1:ENST00000667028.1:ENST00000655541.1:ENST00000668643.1:ENST00000671568.1:ENST00000671036.1:ENST00000669798.1:ENST00000655753.1:ENST00000655856.1:ENST00000658398.1:ENST00000661518.1:ENST00000661279.1:ENST00000655495.1:ENST00000663041.1:ENST00000659827.1:ENST00000667716.1:ENST00000662508.1:ENST00000668416.1:ENST00000658133.1:ENST00000342990.4:ENST00000660054.1:ENST00000671370.1	lncRNA	lncRNA	lncRNA	lncRNA	23	147	2	1.27158	1.3696899999999999	1.4678	0.0309328	0.0150988	0.143457	0.0994339
chr12	54238381	54238480	5330472	0	-	0.333333	(0.32,0.35]	chr12	508602	76	UTR3	UTR3:EXON_MRNA	CBX5	ENSG00000094916.16	ENST00000209875.9	protein_coding	protein_coding	protein_coding	protein_coding	17	124	2	1.26843	1.36916	1.46989	0.0371601	0.0331434	0.155878	0.133994
chr1	29117404	29117502	61022	0	+	0.459184	(0.44,0.476]	chr1	7792	7	UTR3	UTR3:EXON_MRNA	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000649717.1:ENST00000373798.5:ENST00000343067.9:ENST00000460378.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	43	266	2	1.18905	1.3691499999999999	1.54925	0.0260458	0.00401746	0.122149	0.0578189
chr7	73441697	73441797	3554271	0	-	0.41	(0.408,0.44]	chr7	330708	14	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	BAZ1B	ENSG00000009954.11	ENST00000339594.9:ENST00000404251.1	protein_coding	protein_coding	protein_coding	protein_coding	19	120	2	1.23423	1.368525	1.50282	0.0440502	0.0162433	0.149778	0.109464
chr17	22159754	22159854	6579261	0	+	0.32	(0.28,0.32]	chr17	639556	685	INTRON	INTRON	UBBP4	ENSG00000263563.7	ENST00000648259.1:ENST00000688301.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	15	120	2	1.30886	1.368215	1.42757	0.0664119	0.024974	0.182385	0.13265
chr1	193087962	193088061	284560	0	+	0.414141	(0.408,0.44]	chr1	32726	31	UTR3	UTR3:EXON_MRNA:INTRON	RO60	ENSG00000116747.13	ENST00000432079.5:ENST00000400968.7:ENST00000367443.5:ENST00000367444.7:ENST00000367445.7	protein_coding	protein_coding	protein_coding	protein_coding	29	182	2	1.3611	1.367375	1.37365	0.0198256	0.0141722	0.109608	0.103638
chr16	10434740	10434839	6286770	0	+	0.40404	(0.378,0.408]	chr16	601993	7	INTRON	INTRON	ATF7IP2	ENSG00000166669.14	ENST00000396559.5:ENST00000396560.6:ENST00000543967.5:ENST00000562102.6:ENST00000535850.5:ENST00000568027.5:ENST00000324570.9:ENST00000356427.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	78	2	1.28658	1.367225	1.44787	0.0499541	0.0496837	0.17488	0.156383
chr6	31836113	31836194	2843845	0	+	0.481481	(0.476,0.515]	chr6	267909	3	SS3_PROX	SS3_PROX:INTRON	SNHG32	ENSG00000204387.14	ENST00000375640.7:ENST00000375641.6:ENST00000375635.6:ENST00000375638.7:ENST00000648677.1:ENST00000375642.6:ENST00000614363.4:ENST00000395789.5:ENST00000375633.5	lncRNA	lncRNA	lncRNA	lncRNA	35	201	2	0.913245	1.3669425	1.82064	0.0659615	0.00325427	0.181855	0.0524329
chr3	14478817	14478901	1370178	0	+	0.511905	(0.476,0.515]	chr3	144389	4	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SLC6A6	ENSG00000131389.18	ENST00000613060.4:ENST00000618278.4:ENST00000610642.4:ENST00000649500.1:ENST00000622186.5:ENST00000452151.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	17	105	2	1.29325	1.3668	1.44035	0.0518525	0.0181194	0.159306	0.114853
chr5	140474591	140474691	2503569	0	+	0.39	(0.378,0.408]	chr5	239224	19	INTRON	INTRON	ANKHD1	ENSG00000131503.21	ENST00000297183.10:ENST00000360839.7:ENST00000421134.5:ENST00000246149.10	protein_coding	protein_coding	protein_coding	protein_coding	13	84	2	1.29877	1.36611	1.43345	0.0751206	0.0254532	0.19367	0.133676
chr22	20127203	20127279	7478696	0	+	0.355263	(0.35,0.378]	chr22	762808	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	RANBP1	ENSG00000099901.17	ENST00000430524.6:ENST00000402752.5:ENST00000448394.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	74	515	2	1.34127	1.36584	1.39041	0.0085131	0.00818582	0.0810802	0.0780043
chrX	136869754	136869848	7897570	0	-	0.340426	(0.32,0.35]	chrX	804140	7	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	RBMX	ENSG00000147274.14	ENST00000561733.5:ENST00000431446.7:ENST00000496459.2:ENST00000568578.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	23	177	2	1.18138	1.36568	1.54998	0.0455845	0.0133376	0.164236	0.0946278
chr7	127738496	127738596	3403275	0	+	0.53	(0.515,0.57]	chr7	318134	167	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000468166.5:ENST00000465900.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	51	2	1.2325	1.365605	1.49871	0.0770828	0.0576823	0.196285	0.188193
chr3	196062714	196062783	1897345	0	-	0.333333	(0.32,0.35]	chr3	189923	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TFRC	ENSG00000072274.13	ENST00000420415.5:ENST00000360110.9:ENST00000392396.7:ENST00000475593.5:ENST00000465288.5:ENST00000477148.1:ENST00000464368.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	28	194	2	1.24156	1.365265	1.48897	0.0232049	0.0219334	0.123836	0.118148
chr14	21269197	21269297	5835169	0	-	0.6	(0.57,1]	chr14	554477	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	HNRNPC	ENSG00000092199.19	ENST00000336053.10:ENST00000553300.6:ENST00000554969.5:ENST00000556142.5:ENST00000554455.5:ENST00000553753.5:ENST00000555309.5:ENST00000555914.5:ENST00000557442.5:ENST00000556628.5:ENST00000556513.5:ENST00000555883.5:ENST00000557201.5:ENST00000420743.6:ENST00000554539.5:ENST00000554383.5:ENST00000555215.5:ENST00000555137.5:ENST00000554891.5:ENST00000556226.5:ENST00000553614.5:ENST00000557336.1:ENST00000557768.1:ENST00000557033.1:ENST00000555127.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	15	48	2	1.3076	1.3644850000000002	1.42137	0.0395751	0.0325268	0.161534	0.133687
chr4	78803378	78803478	1981655	0	+	0.49	(0.476,0.515]	chr4	198463	263	INTRON	INTRON	BMP2K	ENSG00000138756.19	ENST00000389010.7:ENST00000502613.3:ENST00000502871.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	28	169	2	1.29685	1.36447	1.43209	0.0189832	0.0173576	0.112324	0.108861
chr3	56561975	56562073	1434350	0	+	0.295918	(0.28,0.32]	chr3	151403	2	INTRON	INTRON	CCDC66	ENSG00000180376.17	ENST00000422222.5:ENST00000460838.5:ENST00000439445.5:ENST00000394672.8:ENST00000326595.11:ENST00000459746.5:ENST00000472582.5:ENST00000434467.5:ENST00000471681.5:ENST00000341455.10:ENST00000422788.5:ENST00000442522.6:ENST00000469966.1:ENST00000484623.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	12	98	2	1.28228	1.36429	1.4463	0.0712835	0.0388417	0.185716	0.160515
chr22	21760951	21761051	7560308	0	-	0.28	[0,0.28]	chr22	773344	14	UTR3	UTR3:EXON_MRNA	MAPK1	ENSG00000100030.15	ENST00000215832.11	protein_coding	protein_coding	protein_coding	protein_coding	18	164	2	1.3523	1.36386	1.37542	0.0558022	0.026756	0.165463	0.134744
chr6	31533107	31533206	3078747	0	-	0.414141	(0.408,0.44]	chr6	286739	3	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	DDX39B	ENSG00000198563.14	ENST00000458640.5:ENST00000462256.5:ENST00000376177.6:ENST00000484566.5:ENST00000396172.6:ENST00000417023.5:ENST00000482195.5:ENST00000431908.5:ENST00000481456.1:ENST00000427214.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	35	215	2	1.09025	1.363515	1.63678	0.0336352	0.00614505	0.146709	0.0676501
chr1	25454482	25454582	48186	0	+	0.45	(0.44,0.476]	chr1	5936	1	SS5_PROX	SS5_PROX:INTRON	MACO1	ENSG00000204178.11	ENST00000399766.7:ENST00000374343.5:ENST00000647928.1:ENST00000470035.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	11	67	2	1.20745	1.3632749999999998	1.5191	0.0635101	0.0526241	0.198164	0.160983
chr13	32530886	32530984	5572776	0	-	0.326531	(0.32,0.35]	chr13	532573	30	INTRON	INTRON	N4BP2L2	ENSG00000244754.9	ENST00000357505.10:ENST00000399396.7:ENST00000504114.5:ENST00000446957.6:ENST00000674456.1:ENST00000674161.1:ENST00000674422.1:ENST00000674272.1:ENST00000674452.1:ENST00000674384.1:ENST00000505213.5:ENST00000674219.1:ENST00000267068.5:ENST00000674349.1:ENST00000674428.1:ENST00000674465.1:ENST00000674421.1:ENST00000674180.1:ENST00000674297.1:ENST00000674480.1:ENST00000674377.1:ENST00000674437.1:ENST00000674327.1:ENST00000674399.1:ENST00000674196.1:ENST00000674163.1:ENST00000511143.5:ENST00000674484.1:ENST00000475731.1:ENST00000674433.1:ENST00000674408.1:ENST00000674494.1:ENST00000512755.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	79	2	1.22414	1.362995	1.50185	0.0625148	0.0589483	0.195535	0.167915
chr21	38091744	38091844	7463799	0	-	0.41	(0.408,0.44]	chr21	760281	366	INTRON	INTRON	DSCR4	ENSG00000184029.9	ENST00000398948.5:ENST00000328264.7	lncRNA	lncRNA	lncRNA	lncRNA	16	100	2	1.33029	1.362775	1.39526	0.0469419	0.024791	0.151917	0.131935
chr7	44829551	44829649	3528492	0	-	0.367347	(0.35,0.378]	chr7	329097	29	UTR3	UTR3:EXON_MRNA	H2AZ2	ENSG00000105968.19	ENST00000222690.10	protein_coding	protein_coding	protein_coding	protein_coding	24	162	2	1.19329	1.362685	1.53208	0.0335027	0.0162834	0.146709	0.101453
chr11	34053285	34053367	4767661	0	+	0.52439	(0.515,0.57]	chr11	440937	1	SS5_PROX	SS5_PROX:INTRON	CAPRIN1	ENSG00000135387.21	ENST00000341394.9:ENST00000528856.5:ENST00000389645.7:ENST00000534042.5:ENST00000534825.5:ENST00000532820.5:ENST00000530820.5:ENST00000529307.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	54	2	1.33814	1.362665	1.38719	0.063703	0.0540435	0.181713	0.177689
chr2	61513761	61513861	1130973	0	-	0.34	(0.32,0.35]	chr2	121602	3	SS5_PROX	SS5_PROX:INTRON	XPO1	ENSG00000082898.19	ENST00000677110.1:ENST00000676553.1:ENST00000677556.1:ENST00000677814.1:ENST00000676771.1:ENST00000677803.1:ENST00000677239.1:ENST00000678790.1:ENST00000677928.1:ENST00000678182.1:ENST00000677150.1:ENST00000678172.1:ENST00000678360.1:ENST00000678081.1:ENST00000676889.1:ENST00000676783.1:ENST00000679035.1:ENST00000677422.1:ENST00000677417.1:ENST00000677813.1:ENST00000676999.1:ENST00000676667.1:ENST00000678263.1:ENST00000678877.1:ENST00000677933.1:ENST00000680228.1:ENST00000677289.1:ENST00000677190.1:ENST00000401558.7:ENST00000428210.5:ENST00000677290.1:ENST00000677850.1:ENST00000451765.6:ENST00000676789.1:ENST00000678741.1:ENST00000404992.6:ENST00000406957.5:ENST00000443240.5:ENST00000476585.5:ENST00000468259.1:ENST00000420673.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	26	190	2	0.996382	1.362186	1.72799	0.0785276	0.00436363	0.198122	0.060356
chr8	23531085	23531184	3715118	0	+	0.494949	(0.476,0.515]	chr8	345213	15	INTRON	INTRON	SLC25A37	ENSG00000147454.14	ENST00000519973.6:ENST00000290075.10:ENST00000417331.6:ENST00000518881.5:ENST00000519192.1:ENST00000520654.1:ENST00000523930.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	12	72	2	1.26748	1.36139	1.4553	0.0623645	0.0453667	0.175357	0.164236
chr21	37512928	37513028	7407708	0	+	0.38	(0.378,0.408]	chr21	754961	5	UTR3	UTR3:EXON_MRNA	DYRK1A	ENSG00000157540.22	ENST00000647188.2:ENST00000647504.1:ENST00000338785.8:ENST00000643624.1:ENST00000646548.1	protein_coding	protein_coding	protein_coding	protein_coding	26	169	2	1.33154	1.3611550000000001	1.39077	0.0248259	0.0159662	0.12011	0.109464
chr10	924182	924282	4542512	0	-	0.36	(0.35,0.378]	chr10	419305	4	SS5_PROX	SS5_PROX:INTRON	LARP4B	ENSG00000107929.16	ENST00000316157.8:ENST00000690516.1:ENST00000476529.5:ENST00000406525.6:ENST00000481118.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	11	77	2	1.28976	1.361145	1.43253	0.0648731	0.0486238	0.179414	0.173047
chr10	73044057	73044157	4647309	0	-	0.41	(0.408,0.44]	chr10	427505	1	SS3_PROX	SS3_PROX:INTRON	P4HA1	ENSG00000122884.13	ENST00000394890.7:ENST00000307116.6:ENST00000373008.6:ENST00000440381.5:ENST00000263556.3	protein_coding	protein_coding	protein_coding	protein_coding	14	88	2	1.21994	1.360985	1.50203	0.076179	0.0193894	0.195346	0.119831
chrX	78120650	78120749	7687189	0	+	0.535354	(0.515,0.57]	chrX	787023	21	INTRON	INTRON	PGK1	ENSG00000102144.15	ENST00000644362.1:ENST00000491291.1:ENST00000373316.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	36	174	2	0.996446	1.360878	1.72531	0.0402351	0.00453978	0.161534	0.0595107
chr10	75228251	75228350	4464519	0	+	0.424242	(0.408,0.44]	chr10	411844	55	INTRON	INTRON	VDAC2	ENSG00000165637.14	ENST00000543351.5:ENST00000298468.9:ENST00000332211.11:ENST00000313132.8	protein_coding	protein_coding	protein_coding	protein_coding	14	89	2	1.35901	1.360735	1.36246	0.0428833	0.0386802	0.159946	0.148082
chr19	50803632	50803713	7203181	0	-	0.37037	(0.35,0.378]	chr19	730915	2	EXON_LNCRNA	EXON_LNCRNA:INTRON	C19orf48	ENSG00000167747.16	ENST00000641834.2:ENST00000596287.6:ENST00000597705.6:ENST00000693315.1:ENST00000597493.6:ENST00000692421.1:ENST00000598463.5:ENST00000593287.5:ENST00000601267.5:ENST00000599004.1:ENST00000602125.1	transcribed_unitary_pseudogene	retained_intron	transcribed_unitary_pseudogene	retained_intron:processed_transcript	24	159	2	1.05665	1.360235	1.66382	0.0518335	0.0111917	0.176696	0.0879283
chr17	29256538	29256638	6747418	0	-	0.27	[0,0.28]	chr17	663218	8	UTR3	UTR3:EXON_MRNA	NUFIP2	ENSG00000108256.9	ENST00000225388.9	protein_coding	protein_coding	protein_coding	protein_coding	13	121	2	1.27362	1.360125	1.44663	0.0785647	0.0345947	0.19821	0.148144
chr4	55413906	55414004	1960773	0	+	0.397959	(0.378,0.408]	chr4	196561	13	INTRON	INTRON	TMEM165	ENSG00000134851.13	ENST00000381334.10:ENST00000506198.5:ENST00000508404.5:ENST00000511710.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	28	158	2	0.940664	1.359872	1.77908	0.0600661	0.00982126	0.190704	0.0838128
chr18	789970	790069	6940482	0	-	0.484848	(0.476,0.515]	chr18	686525	16	INTRON	INTRON	YES1	ENSG00000176105.14	ENST00000584307.5:ENST00000314574.5:ENST00000577611.1:ENST00000581960.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	14	87	2	1.19725	1.359725	1.5222	0.0605672	0.0276881	0.171122	0.137011
chr2	74462236	74462332	1158821	0	-	0.614583	(0.57,1]	chr2	124078	10	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	MOGS	ENSG00000115275.15	ENST00000448666.7:ENST00000409065.5:ENST00000462189.1:ENST00000462443.2:ENST00000649601.1:ENST00000649075.1:ENST00000649854.1:ENST00000648810.1:ENST00000647915.1:ENST00000690565.1:ENST00000647771.1:ENST00000647723.1:ENST00000452063.7:ENST00000648768.1:ENST00000649777.1:ENST00000647753.1:ENST00000691308.1:ENST00000650523.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	32	2	1.34554	1.35969	1.37384	0.0766386	0.0508971	0.196164	0.176247
chr1	40378097	40378197	81487	0	+	0.4	(0.378,0.408]	chr1	10553	30	INTRON	INTRON	SMAP2	ENSG00000084070.12	ENST00000435168.6:ENST00000372718.8:ENST00000372708.5	protein_coding	protein_coding	protein_coding	protein_coding	15	99	2	1.32474	1.35954	1.39434	0.0421106	0.0349817	0.149337	0.148082
chr7	106284884	106284961	3608613	0	-	0.714286	(0.57,1]	chr7	336551	1	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	NAMPT	ENSG00000105835.13	ENST00000681491.1:ENST00000222553.8:ENST00000681494.1:ENST00000680708.1:ENST00000681653.1:ENST00000681391.1:ENST00000680991.1:ENST00000680077.1:ENST00000681456.1:ENST00000680675.1:ENST00000680864.1:ENST00000680584.1:ENST00000680669.1:ENST00000424768.2:ENST00000681255.1:ENST00000679873.1:ENST00000679643.1:ENST00000681878.1:ENST00000489732.2:ENST00000679951.1:ENST00000680823.1:ENST00000680468.1:ENST00000680152.1:ENST00000680129.1:ENST00000681223.1:ENST00000679717.1:ENST00000354289.9:ENST00000491027.6:ENST00000489358.5:ENST00000441045.6:ENST00000417537.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	19	60	2	1.25934	1.359025	1.45871	0.0453452	0.0129054	0.149888	0.0990564
chr11	10807624	10807716	4915288	0	-	0.369565	(0.35,0.378]	chr11	460595	2	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	EIF4G2	ENSG00000110321.19	ENST00000526148.6:ENST00000339995.11:ENST00000532383.5:ENST00000396525.7:ENST00000531416.6:ENST00000532082.6:ENST00000524932.6:ENST00000527419.6:ENST00000531507.5:ENST00000525972.5:ENST00000528562.6:ENST00000532570.6:ENST00000530211.6:ENST00000527526.6:ENST00000530702.2:ENST00000525995.1:ENST00000533485.1:ENST00000534246.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	23	156	2	1.21844	1.3588149999999999	1.49919	0.0327716	0.0184435	0.145164	0.108861
chr1	224001709	224001807	321014	0	+	0.367347	(0.35,0.378]	chr1	36975	53	INTRON	INTRON	SEPTIN7P13	ENSG00000185495.10	ENST00000622033.4:ENST00000618315.4:ENST00000327086.8:ENST00000449219.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	10	68	2	1.31002	1.35862	1.40722	0.0733776	0.0562395	0.190105	0.184114
chr10	50388395	50388495	4618329	0	-	0.35	(0.32,0.35]	chr10	425422	437	INTRON	INTRON	SGMS1	ENSG00000198964.14	ENST00000429490.5:ENST00000361781.7:ENST00000619438.4:ENST00000492601.2:ENST00000609445.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	73	2	1.29156	1.35849	1.42542	0.0718205	0.060443	0.191687	0.187046
chr5	151803237	151803337	2522141	0	+	0.37	(0.35,0.378]	chr5	241367	3	SS3_PROX	SS3_PROX:INTRON	G3BP1	ENSG00000145907.16	ENST00000678070.1:ENST00000678964.1:ENST00000678925.1:ENST00000394123.7:ENST00000676978.1:ENST00000679289.1:ENST00000677493.1:ENST00000676644.1:ENST00000677757.1:ENST00000522761.6:ENST00000676827.1:ENST00000520177.6:ENST00000676634.1:ENST00000678854.1:ENST00000676911.1:ENST00000356245.8:ENST00000678646.1:ENST00000677381.1:ENST00000678904.1:ENST00000678910.1:ENST00000678101.1:ENST00000677105.1:ENST00000678369.1:ENST00000678564.1:ENST00000677923.1:ENST00000677323.1:ENST00000677687.1:ENST00000679193.1:ENST00000678825.1:ENST00000678657.1:ENST00000676507.1:ENST00000678612.1:ENST00000676715.1:ENST00000676899.1:ENST00000677658.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	23	159	2	1.34763	1.35847	1.36931	0.0244631	0.0240402	0.129699	0.12011
chr1	52416788	52416887	103833	0	+	0.272727	[0,0.28]	chr1	13629	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	PRPF38A	ENSG00000134748.13	ENST00000257181.10:ENST00000474048.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	23	213	2	1.12579	1.3583850000000002	1.59098	0.0781279	0.00969331	0.197144	0.0874728
chr12	53465253	53465352	5143028	0	+	0.585859	(0.57,1]	chr12	485422	3	SS5_PROX	SS5_PROX:INTRON	PCBP2	ENSG00000197111.16	ENST00000546463.6:ENST00000437231.5:ENST00000447282.5:ENST00000359282.9:ENST00000549863.5:ENST00000359462.9:ENST00000552296.6:ENST00000552819.5:ENST00000455667.7:ENST00000439930.7:ENST00000548933.5:ENST00000546652.6:ENST00000562264.5:ENST00000550585.5:ENST00000547987.2:ENST00000553064.6:ENST00000547859.2:ENST00000549272.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	19	59	2	1.33537	1.358055	1.38074	0.0512131	0.0141202	0.157915	0.103366
chr20	17965217	17965316	7320536	0	-	0.525253	(0.515,0.57]	chr20	745337	24	INTRON	INTRON	SNX5	ENSG00000089006.17	ENST00000377768.7:ENST00000490175.5:ENST00000377759.9:ENST00000431277.5:ENST00000419004.2:ENST00000474883.5:ENST00000469704.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	69	2	1.32091	1.357805	1.3947	0.0433059	0.0429042	0.162255	0.148082
chr8	90304071	90304171	3793134	0	+	0.3	(0.28,0.32]	chr8	351786	569	INTRON	INTRON	LINC00534	ENSG00000253394.7	ENST00000662145.1:ENST00000655523.1:ENST00000517400.6:ENST00000658299.1:ENST00000663329.1:ENST00000658342.1:ENST00000523283.6:ENST00000655219.1:ENST00000662692.1:ENST00000667296.1:ENST00000667565.1:ENST00000523406.2:ENST00000659030.1:ENST00000653734.1:ENST00000654785.1:ENST00000524361.5:ENST00000668745.1:ENST00000666641.2:ENST00000661519.1:ENST00000671657.1:ENST00000655123.1:ENST00000663098.1:ENST00000670903.1:ENST00000654946.1	lncRNA	lncRNA	lncRNA	lncRNA	14	109	2	1.29164	1.35765	1.42366	0.0587737	0.0401321	0.167915	0.161534
chr18	261259	261356	6938972	0	-	0.360825	(0.35,0.378]	chr18	686312	1	INTRON	INTRON	THOC1	ENSG00000079134.13	ENST00000261600.11:ENST00000579232.5:ENST00000580038.5:ENST00000631280.2:ENST00000582313.5:ENST00000581269.5:ENST00000581116.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	17	116	2	1.08501	1.357515	1.63002	0.0798289	0.012123	0.19996	0.0963277
chr1	162599363	162599461	238709	0	+	0.367347	(0.35,0.378]	chr1	28760	1	UTR3	UTR3:EXON_MRNA	UAP1	ENSG00000117143.14	ENST00000367925.6:ENST00000367926.9:ENST00000486089.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	24	163	2	1.07248	1.35704	1.6416	0.0518776	0.0105886	0.176696	0.0861859
chr16	9110406	9110505	6285560	0	+	0.393939	(0.378,0.408]	chr16	601929	73	UTR3	UTR3:EXON_MRNA:INTRON	C16orf72	ENSG00000182831.12	ENST00000327827.12:ENST00000574285.2	protein_coding	protein_coding	protein_coding	protein_coding	21	132	2	1.29968	1.3568	1.41392	0.0525236	0.0131788	0.160753	0.0999551
chr11	5450204	5450304	4897723	0	-	0.49	(0.476,0.515]	chr11	459193	88	INTRON	INTRON	HBG2:ENSG00000239920:HBE1:OR51B5	ENSG00000196565.15:ENSG00000239920.2:ENSG00000213931.7:ENSG00000167355.8	ENST00000380252.6:ENST00000380259.7:ENST00000292896.3:ENST00000380237.5:ENST00000420726.6:ENST00000420465.6:ENST00000415970.6:ENST00000418729.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:nonsense_mediated_decay:processed_transcript	14	85	2	1.125	1.35671	1.58842	0.0615331	0.0406588	0.173682	0.161534
chr16	209403	209495	6425987	0	-	0.543478	(0.515,0.57]	chr16	617436	9	EXON_MRNA	EXON_MRNA:INTRON	LUC7L	ENSG00000007392.17	ENST00000337351.8:ENST00000426094.5:ENST00000397783.5:ENST00000629543.2:ENST00000490762.5:ENST00000293872.13:ENST00000464711.5:ENST00000419516.5:ENST00000397780.5:ENST00000418978.5:ENST00000430864.5:ENST00000443357.5:ENST00000494366.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	26	136	2	1.24366	1.355685	1.46771	0.0292813	0.0102393	0.128055	0.089002
chr9	120856646	120856746	4335767	0	-	0.43	(0.408,0.44]	chr9	398327	11	UTR3	UTR3:EXON_MRNA	PHF19	ENSG00000119403.15	ENST00000373896.8:ENST00000419155.5:ENST00000616568.5	protein_coding	protein_coding	protein_coding	protein_coding	15	94	2	1.33029	1.35561	1.38093	0.0469419	0.0305221	0.151917	0.143385
chr6	7122276	7122376	2798508	0	+	0.5	(0.476,0.515]	chr6	263723	132	INTRON	INTRON	RREB1	ENSG00000124782.21	ENST00000379933.7:ENST00000491191.5:ENST00000471433.5:ENST00000379938.7:ENST00000467782.5:ENST00000349384.10:ENST00000334984.10:ENST00000475946.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	22	133	2	1.23219	1.3553	1.47841	0.0300522	0.0203979	0.142135	0.110792
chr3	152321725	152321825	1535516	0	+	0.33	(0.32,0.35]	chr3	159996	194	INTRON	INTRON	MBNL1	ENSG00000152601.18	ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000495875.6:ENST00000324210.10:ENST00000493459.5:ENST00000459747.1:ENST00000460591.5:ENST00000545754.5:ENST00000357472.7:ENST00000324196.9:ENST00000498502.5:ENST00000463374.5:ENST00000485910.5:ENST00000465907.6:ENST00000492948.5:ENST00000485509.5:ENST00000464596.5	protein_coding	protein_coding	protein_coding	protein_coding	21	149	2	1.30487	1.3551600000000001	1.40545	0.0550088	0.0150807	0.165463	0.108329
chr8	31047071	31047171	3728064	0	+	0.32	(0.28,0.32]	chr8	346522	127	INTRON	INTRON	WRN	ENSG00000165392.11	ENST00000650667.1:ENST00000298139.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	98	2	1.34841	1.3545	1.36059	0.057669	0.0525144	0.178179	0.167723
chr1	99708108	99708207	514734	0	-	0.343434	(0.32,0.35]	chr1	60320	43	UTR3	UTR3:EXON_MRNA	FRRS1	ENSG00000156869.14	ENST00000646001.2	protein_coding	protein_coding	protein_coding	protein_coding	14	96	2	1.24446	1.3542999999999998	1.46414	0.065059	0.0403835	0.179599	0.161534
chr4	55413127	55413224	1960765	0	+	0.463918	(0.44,0.476]	chr4	196561	5	INTRON	INTRON	TMEM165	ENSG00000134851.13	ENST00000381334.10:ENST00000506198.5:ENST00000508404.5:ENST00000511710.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	18	108	2	1.34977	1.35421	1.35865	0.0522828	0.0198266	0.160182	0.120668
chr9	131489482	131489581	4217958	0	+	0.555556	(0.515,0.57]	chr9	386870	10	INTRON	INTRON	PRRC2B	ENSG00000288701.1	ENST00000684596.1:ENST00000683519.1:ENST00000682501.1:ENST00000682662.1:ENST00000683161.1	protein_coding	protein_coding	protein_coding	protein_coding	18	96	2	1.24649	1.3539400000000001	1.46139	0.041089	0.0196358	0.161534	0.109593
chr16	18857688	18857785	6457378	0	-	0.360825	(0.35,0.378]	chr16	622743	15	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	SMG1	ENSG00000157106.18	ENST00000446231.7:ENST00000565324.5:ENST00000569764.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	22	147	2	1.35315	1.3538999999999999	1.35465	0.0348969	0.0192152	0.13747500000000001	0.119831
chr2	151424644	151424743	893358	0	+	0.454545	(0.44,0.476]	chr2	98908	10	INTRON	INTRON	RIF1	ENSG00000080345.18	ENST00000453091.6:ENST00000428287.6:ENST00000444746.7:ENST00000243326.9:ENST00000414861.6:ENST00000430328.6	protein_coding	protein_coding	protein_coding	protein_coding	17	101	2	1.16789	1.353615	1.53934	0.0450599	0.0286379	0.163337	0.126977
chr11	129893485	129893568	5051886	0	-	0.46988	(0.44,0.476]	chr11	476782	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NFRKB	ENSG00000170322.15	ENST00000682444.1:ENST00000446488.7:ENST00000524746.5:ENST00000531755.5:ENST00000530278.5:ENST00000529319.5:ENST00000532225.5:ENST00000526884.1:ENST00000531318.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	13	79	2	1.17605	1.35361	1.53117	0.060782	0.0377545	0.192641	0.140863
chr1	213007029	213007128	635005	0	-	0.424242	(0.408,0.44]	chr1	75016	6	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	ANGEL2	ENSG00000174606.14	ENST00000366962.8:ENST00000360506.6:ENST00000535388.2:ENST00000476904.5:ENST00000460337.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	14	87	2	1.28292	1.3528850000000001	1.42285	0.0429534	0.0421231	0.162255	0.148082
chr20	32808388	32808485	7257155	0	+	0.443299	(0.44,0.476]	chr20	737245	6	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	DNMT3B	ENSG00000088305.19	ENST00000696232.1:ENST00000328111.6:ENST00000696231.1:ENST00000348286.6:ENST00000353855.6:ENST00000696233.1:ENST00000201963.3:ENST00000696238.1:ENST00000696245.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	34	207	2	1.34547	1.3528799999999999	1.36029	0.019364	0.0114981	0.108901	0.0958243
chr10	28562030	28562129	4414094	0	+	0.454545	(0.44,0.476]	chr10	407148	236	INTRON	INTRON	WAC	ENSG00000095787.24	ENST00000680735.1:ENST00000375664.8:ENST00000428935.6:ENST00000651598.1:ENST00000628285.3:ENST00000681112.1:ENST00000679570.1:ENST00000375646.5:ENST00000354911.9:ENST00000347934.8:ENST00000420266.6:ENST00000651885.1:ENST00000651441.1:ENST00000679398.1:ENST00000424454.5:ENST00000442148.6:ENST00000448193.5:ENST00000414108.6:ENST00000679428.1:ENST00000439676.5:ENST00000345541.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	21	129	2	1.20235	1.352855	1.50336	0.068424	0.00860839	0.184298	0.0837875
chr2	61536609	61536709	1131218	0	-	0.57	(0.515,0.57]	chr2	121649	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	XPO1	ENSG00000082898.19	ENST00000676553.1:ENST00000677556.1:ENST00000677814.1:ENST00000676771.1:ENST00000677803.1:ENST00000677239.1:ENST00000678790.1:ENST00000677928.1:ENST00000678182.1:ENST00000677150.1:ENST00000678172.1:ENST00000678360.1:ENST00000678081.1:ENST00000676889.1:ENST00000676783.1:ENST00000679035.1:ENST00000677422.1:ENST00000677417.1:ENST00000677813.1:ENST00000676999.1:ENST00000401558.7:ENST00000428210.5:ENST00000677290.1:ENST00000677850.1:ENST00000451765.6:ENST00000676789.1:ENST00000678741.1:ENST00000404992.6:ENST00000406957.5:ENST00000443240.5:ENST00000481214.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	34	180	2	1.09715	1.3526250000000002	1.6081	0.0469336	0.00263568	0.151917	0.0472538
chr18	46093765	46093865	6965456	0	-	0.53	(0.515,0.57]	chr18	689408	4	SS3_PROX	SS3_PROX:INTRON	ATP5F1A	ENSG00000152234.16	ENST00000398752.11:ENST00000282050.6:ENST00000593152.6:ENST00000586592.5:ENST00000590665.5:ENST00000590156.5:ENST00000592364.5:ENST00000589252.5:ENST00000589869.5:ENST00000590406.5:ENST00000590324.5:ENST00000590448.5:ENST00000592989.1:ENST00000591981.5:ENST00000585650.1:ENST00000591267.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	14	74	2	1.18251	1.351645	1.52078	0.0690131	0.0211248	0.184298	0.122921
chr10	73065354	73065454	4647526	0	-	0.33	(0.32,0.35]	chr10	427530	114	INTRON	INTRON	P4HA1	ENSG00000122884.13	ENST00000394890.7:ENST00000307116.6:ENST00000373008.6:ENST00000440381.5:ENST00000263556.3	protein_coding	protein_coding	protein_coding	protein_coding	17	120	2	1.31321	1.35101	1.38881	0.0506111	0.0285104	0.156383	0.138847
chr20	63890699	63890793	7300949	0	+	0.510638	(0.476,0.515]	chr20	743131	8	UTR3	UTR3:EXON_MRNA	TPD52L2	ENSG00000101150.18	ENST00000611972.4:ENST00000615907.4:ENST00000346249.9:ENST00000348257.9:ENST00000352482.8:ENST00000351424.8:ENST00000217121.9:ENST00000358548.4:ENST00000474176.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	18	108	2	1.18068	1.350975	1.52127	0.0432233	0.0243835	0.162255	0.12011
chr6	3267095	3267194	2789327	0	+	0.444444	(0.44,0.476]	chr6	263453	29	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	PSMG4	ENSG00000180822.12	ENST00000509933.1:ENST00000380306.8:ENST00000380305.4:ENST00000438998.7:ENST00000419065.6:ENST00000473000.2:ENST00000324987.4:ENST00000451246.2:ENST00000454610.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	70	2	1.26546	1.3508550000000001	1.43625	0.063142	0.0568404	0.197183	0.167723
chr3	177133832	177133931	1871808	0	-	0.383838	(0.378,0.408]	chr3	187418	20	INTRON	INTRON	TBL1XR1	ENSG00000177565.18	ENST00000457928.7:ENST00000430069.5:ENST00000673974.1:ENST00000352800.10:ENST00000422442.6:ENST00000428970.5:ENST00000424913.5:ENST00000437738.5:ENST00000431421.5:ENST00000635794.1:ENST00000630796.2:ENST00000450267.5:ENST00000630833.2:ENST00000431674.5:ENST00000422066.5:ENST00000443315.5:ENST00000627825.2:ENST00000427349.5:ENST00000413084.5:ENST00000637137.1:ENST00000491623.2:ENST00000637544.1:ENST00000636478.1:ENST00000636187.1:ENST00000636912.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	12	75	2	1.30976	1.350825	1.39189	0.0751636	0.0395315	0.193731	0.161534
chr1	109215252	109215351	179605	0	+	0.383838	(0.378,0.408]	chr1	19612	2	INTRON	INTRON	SARS1	ENSG00000031698.13	ENST00000234677.7:ENST00000477544.5:ENST00000369923.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	20	129	2	1.14167	1.350575	1.55948	0.0734588	0.00846312	0.190238	0.0829473
chr11	65430761	65430861	4805850	0	+	0.36	(0.35,0.378]	chr11	446554	81	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	32	214	2	1.29589	1.3504749999999999	1.40506	0.0276623	0.0106741	0.123904	0.0917199
chr16	21866904	21867004	6461912	0	-	0.46	(0.44,0.476]	chr16	623467	7	INTRON	INTRON	NPIPB4	ENSG00000185864.18	ENST00000543449.1:ENST00000538859.1	protein_coding	processed_transcript	protein_coding	processed_transcript	16	101	2	1.33977	1.35026	1.36075	0.0389168	0.0340623	0.160783	0.134916
chr2	69942548	69942647	805788	0	+	0.444444	(0.44,0.476]	chr2	89939	44	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	MXD1	ENSG00000059728.11	ENST00000540449.5:ENST00000264444.7:ENST00000465446.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	75	2	1.28061	1.349965	1.41932	0.0639824	0.0391653	0.177882	0.161534
chr11	110231091	110231188	5040656	0	-	0.42268	(0.408,0.44]	chr11	474655	18	UTR3	UTR3:EXON_MRNA:INTRON	RDX	ENSG00000137710.17	ENST00000645527.1:ENST00000530749.5:ENST00000528498.5:ENST00000645312.1:ENST00000528900.5:ENST00000530301.5:ENST00000647231.1:ENST00000646663.1:ENST00000645495.2:ENST00000544551.5:ENST00000527537.5:ENST00000532461.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	67	2	1.24904	1.349485	1.44993	0.0638951	0.055886	0.18407	0.177824
chr11	62853428	62853526	4961866	0	-	0.387755	(0.378,0.408]	chr11	467083	5	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SNHG1	ENSG00000255717.8	ENST00000689147.1:ENST00000686500.1:ENST00000665371.1:ENST00000687243.1:ENST00000537869.6:ENST00000686081.1:ENST00000686670.1:ENST00000690476.1:ENST00000688102.1:ENST00000691255.1:ENST00000539303.6:ENST00000538654.6:ENST00000540725.6:ENST00000658540.1:ENST00000685229.1:ENST00000686478.1:ENST00000686008.1:ENST00000692887.1:ENST00000691324.1:ENST00000692454.1:ENST00000685577.1:ENST00000693734.1:ENST00000537068.5:ENST00000537925.5:ENST00000541416.6:ENST00000541578.6:ENST00000537024.6:ENST00000686740.1:ENST00000663967.1:ENST00000670323.1:ENST00000660547.1:ENST00000689664.1:ENST00000690542.1:ENST00000539921.7:ENST00000687029.1:ENST00000661616.1:ENST00000670469.1:ENST00000664307.1:ENST00000665512.1:ENST00000656268.1:ENST00000535689.6:ENST00000663237.1:ENST00000544550.6:ENST00000660730.1:ENST00000660960.1:ENST00000662229.1:ENST00000670729.1:ENST00000655919.1:ENST00000671236.1:ENST00000667655.1:ENST00000653690.1:ENST00000661936.1:ENST00000544983.2:ENST00000535076.6:ENST00000656240.1:ENST00000539975.5:ENST00000656589.1:ENST00000545920.2:ENST00000537965.6:ENST00000670502.1:ENST00000662400.1:ENST00000663092.1:ENST00000656241.1:ENST00000652879.1:ENST00000668309.1:ENST00000545440.5:ENST00000542112.5:ENST00000541615.5:ENST00000538266.5:ENST00000545688.5:ENST00000540865.5	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	17	109	2	1.12541	1.348385	1.57136	0.058762	0.0233757	0.167915	0.128037
chr5	171408098	171408186	2546782	0	+	0.375	(0.35,0.378]	chr5	243127	3	SS5_PROX	SS5_PROX:INTRON	NPM1	ENSG00000181163.14	ENST00000517671.5:ENST00000676613.1:ENST00000678186.1:ENST00000678267.1:ENST00000677297.1:ENST00000521672.6:ENST00000679190.1:ENST00000677467.1:ENST00000678280.1:ENST00000676625.1:ENST00000351986.10:ENST00000676504.1:ENST00000676589.1:ENST00000677357.1:ENST00000296930.10:ENST00000521260.2:ENST00000518587.2:ENST00000678774.1:ENST00000677600.1:ENST00000677741.1:ENST00000677325.1:ENST00000677672.1:ENST00000677907.1:ENST00000677904.1:ENST00000677682.1:ENST00000524204.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	81	2	1.32176	1.34803	1.3743	0.0623871	0.0452456	0.175402	0.163924
chr7	157206597	157206697	3454629	0	+	0.55	(0.515,0.57]	chr7	322965	44	INTRON	INTRON	UBE3C	ENSG00000009335.18	ENST00000348165.10	protein_coding	protein_coding	protein_coding	protein_coding	17	89	2	1.31407	1.347985	1.3819	0.0391988	0.0249084	0.143072	0.132323
chr14	101790488	101790587	5818784	0	+	0.363636	(0.35,0.378]	chr14	551829	7	INTRON	INTRON	PPP2R5C	ENSG00000078304.20	ENST00000694906.1:ENST00000422945.6:ENST00000554442.5:ENST00000556068.5:ENST00000328724.9:ENST00000554504.1:ENST00000553890.1:ENST00000553554.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	78	2	1.20425	1.3472650000000002	1.49028	0.0590834	0.0567138	0.185112	0.168067
chr17	46147524	46147624	6784411	0	-	0.4	(0.378,0.408]	chr17	669216	263	INTRON	INTRON	KANSL1	ENSG00000120071.15	ENST00000574590.6:ENST00000572904.6:ENST00000432791.7:ENST00000575318.6:ENST00000638275.1:ENST00000262419.10:ENST00000648792.1:ENST00000639531.1:ENST00000639150.1:ENST00000639853.1:ENST00000571698.2:ENST00000639375.1:ENST00000638269.1:ENST00000576248.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	14	91	2	1.29968	1.34701	1.39434	0.0525236	0.0349817	0.160753	0.149337
chr22	22552038	22552128	7562392	0	-	0.5	(0.476,0.515]	chr22	773608	6	INTRON	INTRON	PRAME	ENSG00000185686.18	ENST00000492657.5:ENST00000398743.6:ENST00000405655.8:ENST00000543184.5:ENST00000398741.5:ENST00000402697.5:ENST00000439106.5:ENST00000438888.5:ENST00000420709.5:ENST00000476336.5:ENST00000485532.1:ENST00000406503.1:ENST00000442481.5:ENST00000403441.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	36	218	2	1.16011	1.34684	1.53357	0.0307667	0.00626732	0.13151	0.0721518
chr7	105274559	105274659	3602758	0	-	0.38	(0.378,0.408]	chr7	336144	53	INTRON	INTRON	SRPK2	ENSG00000135250.17	ENST00000393651.8:ENST00000489828.5:ENST00000482897.5:ENST00000460391.5:ENST00000462282.5:ENST00000465112.5:ENST00000482862.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	12	77	2	1.21	1.346425	1.48285	0.0633399	0.044825	0.197726	0.149888
chr6	167911707	167911798	3035202	0	+	0.318681	(0.28,0.32]	chr6	282794	3	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	AFDN	ENSG00000130396.21	ENST00000683244.1:ENST00000351017.9:ENST00000344191.8:ENST00000392112.5:ENST00000392108.7:ENST00000400822.7:ENST00000447894.6:ENST00000366809.6:ENST00000366806.6:ENST00000423229.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	17	128	2	1.29793	1.346155	1.39438	0.0635439	0.0291137	0.177272	0.14147
chr3	153164142	153164242	1537060	0	+	0.33	(0.32,0.35]	chr3	160077	10	UTR3	UTR3:EXON_MRNA	RAP2B	ENSG00000181467.5	ENST00000323534.5	protein_coding	protein_coding	protein_coding	protein_coding	21	155	2	1.33801	1.345715	1.35342	0.0301299	0.0289691	0.14092	0.129377
chr2	54978043	54978142	1120677	0	-	0.373737	(0.35,0.378]	chr2	120130	29	INTRON	INTRON	RTN4	ENSG00000115310.19	ENST00000394609.6:ENST00000404909.5:ENST00000394611.6:ENST00000317610.11:ENST00000357732.8:ENST00000337526.11:ENST00000357376.7:ENST00000405240.5:ENST00000486085.5:ENST00000438462.1	protein_coding	protein_coding	protein_coding	protein_coding	24	150	2	1.18263	1.3454700000000002	1.50831	0.0291659	0.0277212	0.141545	0.123904
chrX	151407993	151408091	7735220	0	+	0.530612	(0.515,0.57]	chrX	791463	31	UTR3	UTR3:EXON_MRNA	VMA21	ENSG00000160131.14	ENST00000330374.7	protein_coding	protein_coding	protein_coding	protein_coding	12	64	2	1.24949	1.34519	1.44089	0.0617046	0.0486249	0.193423	0.153975
chr18	21599150	21599247	6955101	0	-	0.536082	(0.515,0.57]	chr18	688038	18	INTRON	INTRON	ESCO1	ENSG00000141446.11	ENST00000269214.10:ENST00000383276.1:ENST00000580101.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	12	63	2	1.14264	1.34471	1.54678	0.0774783	0.0324987	0.196285	0.145164
chr3	196932731	196932830	1597103	0	+	0.363636	(0.35,0.378]	chr3	165450	9	UTR3	UTR3:EXON_MRNA	SENP5	ENSG00000119231.11	ENST00000323460.10	protein_coding	protein_coding	protein_coding	protein_coding	41	274	2	1.13775	1.3437999999999999	1.54985	0.033324	0.0057631	0.134145	0.0683055
chr4	39705178	39705278	1953062	0	+	0.47	(0.44,0.476]	chr4	195630	64	INTRON	INTRON	UBE2K	ENSG00000078140.14	ENST00000510934.5:ENST00000261427.10:ENST00000438068.6:ENST00000513231.5:ENST00000503368.5:ENST00000445950.2:ENST00000510719.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	27	163	2	1.09708	1.34375	1.59042	0.0410007	0.0101604	0.161534	0.0850389
chr16	85576143	85576243	6415593	0	+	0.35	(0.32,0.35]	chr16	615470	194	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	21	150	2	1.03716	1.343485	1.64981	0.072913	0.0117401	0.189235	0.0962115
chr3	6559533	6559633	1356837	0	+	0.23	[0,0.28]	chr3	142512	8	INTRON	INTRON	ENSG00000189229	ENSG00000189229.12	ENST00000433639.1:ENST00000655754.1:ENST00000653839.1:ENST00000662846.1:ENST00000414438.2:ENST00000658468.1:ENST00000669512.1:ENST00000667028.1:ENST00000655541.1:ENST00000668643.1:ENST00000671568.1:ENST00000671036.1:ENST00000669798.1:ENST00000655753.1:ENST00000655856.1:ENST00000658398.1:ENST00000661518.1:ENST00000661279.1:ENST00000655495.1:ENST00000663041.1:ENST00000659827.1:ENST00000667716.1:ENST00000662508.1:ENST00000668416.1:ENST00000658133.1:ENST00000342990.4:ENST00000660054.1:ENST00000671370.1	lncRNA	lncRNA	lncRNA	lncRNA	17	154	2	1.20683	1.343275	1.47972	0.0515373	0.0388233	0.176696	0.143072
chr5	146511018	146511113	2516176	0	+	0.336842	(0.32,0.35]	chr5	240432	5	UTR3	UTR3:EXON_MRNA	TCERG1	ENSG00000113649.13	ENST00000296702.9:ENST00000679501.2:ENST00000394421.7:ENST00000506524.5:ENST00000511077.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	26	183	2	1.13649	1.342645	1.5488	0.0382588	0.0165207	0.158352	0.102588
chr17	27295713	27295810	6580547	0	+	0.28866000000000003	(0.28,0.32]	chr17	639598	9	INTRON	INTRON	WSB1	ENSG00000109046.15	ENST00000581440.5:ENST00000578312.5:ENST00000583742.1:ENST00000467843.6:ENST00000579733.5:ENST00000583193.5:ENST00000262394.7:ENST00000427287.6:ENST00000581185.5:ENST00000584354.1:ENST00000583786.5:ENST00000581089.1:ENST00000348811.6:ENST00000582208.1:ENST00000584114.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	21	152	2	1.06911	1.3425850000000001	1.61606	0.0537018	0.0268974	0.180767	0.123442
chr19	28520217	28520317	7166297	0	-	0.36	(0.35,0.378]	chr19	724189	520	INTRON	INTRON	ENSG00000283403:ENSG00000267243	ENSG00000283403.1:ENSG00000267243.6	ENST00000592347.5:ENST00000593065.5	lncRNA	lncRNA	lncRNA	lncRNA	58	385	2	1.33187	1.342435	1.353	0.0133683	0.00878189	0.0946278	0.0848089
chr1	1316952	1317051	359483	0	-	0.636364	(0.57,1]	chr1	41630	9	EXON_LNCRNA	EXON_LNCRNA:INTRON	INTS11	ENSG00000127054.22	ENST00000540437.5:ENST00000545578.5:ENST00000620829.4:ENST00000435064.6:ENST00000323275.10:ENST00000411962.5:ENST00000462432.5:ENST00000419704.5:ENST00000458452.7:ENST00000421495.6:ENST00000532772.5:ENST00000450926.6:ENST00000527098.5:ENST00000528879.5:ENST00000531377.5:ENST00000434694.6:ENST00000488042.6:ENST00000526797.5:ENST00000526332.5:ENST00000430786.5:ENST00000527719.5:ENST00000530031.5:ENST00000526113.1:ENST00000526904.5:ENST00000525603.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	12	38	2	1.26112	1.34205	1.42298	0.0533929	0.0510995	0.176696	0.162935
chr17	78109974	78110073	6844287	0	-	0.535354	(0.515,0.57]	chr17	677097	27	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TMC6	ENSG00000141524.18	ENST00000590602.6:ENST00000589217.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	22	112	2	1.07568	1.3419699999999999	1.60826	0.050632	0.0118853	0.156383	0.0962115
chr22	21860623	21860723	7561316	0	-	0.35	(0.32,0.35]	chr22	773388	524	INTRON	INTRON	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	17	122	2	1.1701	1.3419349999999999	1.51377	0.0518461	0.0287248	0.176696	0.127066
chr16	227598	227686	6426173	0	-	0.488636	(0.476,0.515]	chr16	617449	4	UTR5	UTR5:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	LUC7L	ENSG00000007392.17	ENST00000337351.8:ENST00000426094.5:ENST00000397783.5:ENST00000629543.2:ENST00000490762.5:ENST00000293872.13:ENST00000419516.5:ENST00000397780.5:ENST00000418978.5:ENST00000430864.5:ENST00000443357.5:ENST00000494366.5:ENST00000469109.1:ENST00000428363.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	32	194	2	1.13601	1.34192	1.54783	0.0399742	0.00584404	0.143303	0.0689669
chr17	63798979	63799079	6661212	0	+	0.42	(0.408,0.44]	chr17	649966	1	SS3_PROX	SS3_PROX:INTRON	DDX42	ENSG00000198231.14	ENST00000578681.5:ENST00000583590.5:ENST00000389924.7:ENST00000359353.9:ENST00000578137.5:ENST00000584261.5:ENST00000577940.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	74	2	1.32564	1.341515	1.35739	0.063317	0.0437289	0.177047	0.162255
chr8	29062782	29062882	3726601	0	+	0.41	(0.408,0.44]	chr8	346339	55	INTRON	INTRON	HMBOX1	ENSG00000147421.18	ENST00000522468.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	12	74	2	1.24904	1.34146	1.43388	0.055886	0.0509486	0.18407	0.157123
chr22	20862838	20862938	7480226	0	+	0.48	(0.476,0.515]	chr22	763060	28	INTRON	INTRON	SNAP29	ENSG00000099940.12	ENST00000215730.12:ENST00000490458.1:ENST00000439214.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	11	69	2	1.33919	1.3412250000000001	1.34326	0.06316	0.0529391	0.197199	0.161923
chr4	32001020	32001120	1941458	0	+	0.39	(0.378,0.408]	chr4	194727	28	INTRON	INTRON	LINC02506	ENSG00000251129.3	ENST00000662669.1:ENST00000665582.2:ENST00000667252.2:ENST00000660373.2:ENST00000684849.1:ENST00000513211.2:ENST00000659613.1:ENST00000657576.1:ENST00000686730.1:ENST00000685407.1:ENST00000685455.1:ENST00000655951.1	lncRNA	lncRNA	lncRNA	lncRNA	29	182	2	1.20759	1.341195	1.4748000000000001	0.0255459	0.0155525	0.133676	0.100944
chr1	244844265	244844363	672882	0	-	0.459184	(0.44,0.476]	chr1	79586	38	UTR3	UTR3:EXON_MRNA:INTRON	HNRNPU	ENSG00000153187.20	ENST00000475997.6:ENST00000366527.4:ENST00000649899.1:ENST00000638230.1:ENST00000640657.1	protein_coding	retained_intron	protein_coding	retained_intron:nonsense_mediated_decay	22	136	2	1.29637	1.3410600000000001	1.38575	0.0281587	0.0230263	0.137247	0.118056
chr17	70057900	70057999	6828026	0	-	0.484848	(0.476,0.515]	chr17	675005	38	INTRON	INTRON	ENSG00000230258	ENSG00000230258.6	ENST00000435112.5:ENST00000587325.1	lncRNA	lncRNA	lncRNA	lncRNA	12	73	2	1.27247	1.3409849999999999	1.4095	0.054012	0.0520408	0.176908	0.16443
chr5	131696422	131696521	2719728	0	-	0.353535	(0.35,0.378]	chr5	255672	169	INTRON	INTRON	FNIP1	ENSG00000217128.13	ENST00000510461.6:ENST00000307954.12:ENST00000307968.11:ENST00000511848.1	protein_coding	protein_coding	protein_coding	protein_coding	13	86	2	1.2369	1.340165	1.44343	0.0514088	0.0511272	0.176696	0.158464
chr16	8100522	8100622	6441514	0	-	0.36	(0.35,0.378]	chr16	620351	929	INTRON	INTRON	ENSG00000260289	ENSG00000260289.2	ENST00000670665.1:ENST00000654046.1:ENST00000567103.2	lncRNA	lncRNA	lncRNA	lncRNA	10	69	2	1.33846	1.33996	1.34146	0.0687435	0.0634598	0.19806000000000001	0.184298
chr17	82095219	82095319	6851256	0	-	0.6	(0.57,1]	chr17	678895	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	FASN	ENSG00000169710.9	ENST00000306749.4:ENST00000634990.1:ENST00000635197.1:ENST00000637525.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	22	68	2	1.21616	1.3396	1.46304	0.0317631	0.0148782	0.13151	0.107116
chr1	32116131	32116231	63534	0	+	0.35	(0.32,0.35]	chr1	8071	76	INTRON	INTRON	KPNA6	ENSG00000025800.14	ENST00000373625.8:ENST00000471599.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	19	136	2	1.22668	1.33893	1.45118	0.0389728	0.0302091	0.160909	0.129709
chr7	5605966	5606064	3272557	0	+	0.612245	(0.57,1]	chr7	304190	6	UTR3	UTR3:EXON_MRNA	FSCN1	ENSG00000075618.18	ENST00000382361.8:ENST00000473330.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	41	117	2	0.891723	1.3380115	1.7843	0.0519017	0.0016401	0.176696	0.0369207
chr11	86060463	86060562	5014757	0	-	0.373737	(0.35,0.378]	chr11	473022	285	INTRON	INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000630913.2:ENST00000528398.5:ENST00000356360.9:ENST00000534412.5:ENST00000531558.1:ENST00000531930.5:ENST00000532041.5:ENST00000525162.5:ENST00000528256.1:ENST00000528411.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	38	239	2	1.21764	1.337765	1.45789	0.017613	0.0175238	0.11319	0.105026
chr1	19216151	19216249	386849	0	-	0.530612	(0.515,0.57]	chr1	46149	6	UTR3	UTR3:EXON_MRNA	EMC1	ENSG00000127463.16	ENST00000477853.6:ENST00000688219.1:ENST00000690732.1	protein_coding	protein_coding	protein_coding	protein_coding	22	116	2	1.29858	1.33773	1.37688	0.0298647	0.0189055	0.142135	0.108861
chr12	50145061	50145161	5322948	0	-	0.49	(0.476,0.515]	chr12	507502	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	CERS5	ENSG00000139624.14	ENST00000317551.12:ENST00000422340.6:ENST00000551697.5:ENST00000380189.8:ENST00000547787.5:ENST00000438450.6:ENST00000542320.5:ENST00000547800.2:ENST00000549389.5:ENST00000550258.5:ENST00000547455.5:ENST00000546514.1:ENST00000549942.1:ENST00000550899.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	10	62	2	1.28655	1.337595	1.38864	0.075974	0.0547008	0.194842	0.182743
chr1	21773166	21773266	396770	0	-	0.5	(0.476,0.515]	chr1	47345	150	INTRON	INTRON	USP48	ENSG00000090686.16	ENST00000400301.5:ENST00000308271.14:ENST00000529637.5:ENST00000421625.6:ENST00000527823.5:ENST00000532737.1:ENST00000489108.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	18	107	2	1.30826	1.3372600000000001	1.36626	0.0587053	0.0193234	0.167915	0.119831
chr11	2396954	2397043	4722788	0	+	0.404494	(0.378,0.408]	chr11	436950	2	UTR3	UTR3:EXON_MRNA	CD81	ENSG00000110651.12	ENST00000263645.10:ENST00000492627.5:ENST00000526072.5:ENST00000531840.1:ENST00000481687.1:ENST00000468153.1:ENST00000481386.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	24	153	2	1.10458	1.33719	1.5698	0.0627114	0.00717314	0.175994	0.0756118
chr4	55399951	55400051	1960629	0	+	0.22	[0,0.28]	chr4	196546	3	INTRON	INTRON	TMEM165	ENSG00000134851.13	ENST00000381334.10:ENST00000506198.5:ENST00000508404.5:ENST00000511710.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	23	204	2	1.27445	1.337125	1.3998	0.0615972	0.0180023	0.173858	0.114436
chr10	28620190	28620287	4414694	0	+	0.340206	(0.32,0.35]	chr10	407212	7	UTR3	UTR3:EXON_MRNA	WAC	ENSG00000095787.24	ENST00000680735.1:ENST00000375664.8:ENST00000628285.3:ENST00000681112.1:ENST00000679570.1:ENST00000354911.9:ENST00000347934.8:ENST00000420266.6:ENST00000679398.1:ENST00000442148.6:ENST00000414108.6:ENST00000679428.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	20	135	2	1.20547	1.33703	1.46859	0.0399069	0.0333118	0.146487	0.14308
chr7	129456942	129457042	3411788	0	+	0.46	(0.44,0.476]	chr7	318933	3	SS5_PROX	SS5_PROX:INTRON	STRIP2	ENSG00000128578.10	ENST00000249344.7:ENST00000435494.2	protein_coding	protein_coding	protein_coding	protein_coding	21	125	2	1.03688	1.336535	1.63619	0.0605749	0.0132839	0.192027	0.0944742
chr19	1589317	1589415	7112490	0	-	0.408163	(0.378,0.408]	chr19	714541	31	INTRON	INTRON	MBD3:ENSG00000267059	ENSG00000071655.18:ENSG00000267059.2	ENST00000434436.8:ENST00000156825.5:ENST00000585937.1:ENST00000585967.5:ENST00000592965.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	21	140	2	1.15185	1.3364150000000001	1.52098	0.0527814	0.0143567	0.178798	0.0967151
chr21	6662755	6662854	7425801	0	-	0.393939	(0.378,0.408]	chr21	757499	28	INTRON	INTRON	ENSG00000280145	ENSG00000280145.3	ENST00000625185.3:ENST00000624846.3:ENST00000623313.1:ENST00000624965.1	lncRNA	lncRNA	lncRNA	lncRNA	13	82	2	1.29877	1.33585	1.37293	0.0751206	0.0317131	0.19367	0.144715
chr4	126643982	126644082	2237149	0	-	0.36	(0.35,0.378]	chr4	219023	1785	INTRON	INTRON	ENSG00000286251	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	16	106	2	1.25787	1.335845	1.41382	0.0708442	0.0209096	0.184617	0.122348
chr14	21249549	21249649	5834967	0	-	0.35	(0.32,0.35]	chr14	554459	127	INTRON	INTRON	HNRNPC	ENSG00000092199.19	ENST00000336053.10:ENST00000553300.6:ENST00000554969.5:ENST00000556142.5:ENST00000554455.5:ENST00000430246.6:ENST00000553753.5:ENST00000555309.5:ENST00000555914.5:ENST00000557442.5:ENST00000556628.5:ENST00000556513.5:ENST00000555883.5:ENST00000557201.5:ENST00000556897.5:ENST00000420743.6:ENST00000554539.5:ENST00000554383.5:ENST00000555215.5:ENST00000555137.5:ENST00000554891.5:ENST00000556226.5:ENST00000555176.5:ENST00000553614.5:ENST00000557336.1:ENST00000557768.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	20	144	2	1.16171	1.335475	1.50924	0.0663637	0.0131696	0.18226	0.0999551
chr12	76048228	76048328	5369827	0	-	0.3	(0.28,0.32]	chr12	512241	118	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	NAP1L1	ENSG00000187109.15	ENST00000618691.5:ENST00000552056.5:ENST00000393263.7:ENST00000431879.7:ENST00000552147.5:ENST00000547773.5:ENST00000552013.1:ENST00000544816.5:ENST00000542344.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	28	211	2	1.15325	1.33373	1.51421	0.034746	0.0207531	0.1484	0.111265
chr21	9109595	9109695	7426435	0	-	0.42	(0.408,0.44]	chr21	757579	213	INTRON	INTRON	TEKT4P2	ENSG00000188681.12	ENST00000690061.1:ENST00000689141.1:ENST00000688310.1:ENST00000687537.1:ENST00000690096.1:ENST00000687888.1:ENST00000690389.1:ENST00000684989.1:ENST00000416067.6:ENST00000693307.1:ENST00000692383.1:ENST00000685666.1:ENST00000688451.1:ENST00000691190.1:ENST00000685532.1:ENST00000687488.1:ENST00000690713.1:ENST00000691834.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	19	117	2	1.32966	1.3335650000000001	1.33747	0.0346834	0.0277972	0.137011	0.136937
chr11	119044280	119044374	5046532	0	-	0.468085	(0.44,0.476]	chr11	475880	2	UTR3	UTR3:EXON_MRNA	HYOU1	ENSG00000149428.21	ENST00000617285.5:ENST00000612687.4:ENST00000694928.1:ENST00000614711.5:ENST00000694930.1:ENST00000694929.1:ENST00000534233.6:ENST00000530473.6:ENST00000533381.6:ENST00000532519.7:ENST00000652093.1:ENST00000694933.1:ENST00000694934.1:ENST00000694935.1:ENST00000694932.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	33	180	2	1.13902	1.33312	1.52722	0.0240007	0.0201407	0.12949	0.109913
chr7	105057375	105057475	3375056	0	+	0.32	(0.28,0.32]	chr7	315877	160	INTRON	INTRON	KMT2E	ENSG00000005483.22	ENST00000622386.2:ENST00000257745.9:ENST00000334884.9:ENST00000311117.8:ENST00000478990.5:ENST00000495267.5:ENST00000476671.5:ENST00000667857.1:ENST00000474203.5:ENST00000482560.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	24	174	2	1.25568	1.333105	1.41053	0.0501096	0.0234332	0.156383	0.128347
chr22	19428594	19428694	7554394	0	-	0.48	(0.476,0.515]	chr22	772317	175	INTRON	INTRON	HIRA:C22orf39	ENSG00000100084.14:ENSG00000242259.9	ENST00000263208.5:ENST00000340170.8:ENST00000509549.5:ENST00000464189.5:ENST00000452818.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	22	133	2	1.17951	1.333045	1.48658	0.0381849	0.0206817	0.141795	0.122348
chr12	118225987	118226087	5428807	0	-	0.47	(0.44,0.476]	chr12	518687	115	INTRON	INTRON	TAOK3	ENSG00000135090.14	ENST00000392533.8:ENST00000419821.6:ENST00000537305.5:ENST00000538601.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	23	139	2	1.20214	1.33293	1.46372	0.0335581	0.0191573	0.146709	0.108861
chr9	133259618	133259718	4369872	0	-	0.67	(0.57,1]	chr9	402051	4	SS5_PROX	SS5_PROX:INTRON	ABO	ENSG00000175164.16	ENST00000679909.1:ENST00000453660.4:ENST00000647353.1:ENST00000611156.4:ENST00000538324.2:ENST00000651471.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	17	52	2	1.16889	1.3327550000000001	1.49662	0.0483349	0.0229916	0.172077	0.118056
chr18	1349721	1349821	6941677	0	-	0.38	(0.378,0.408]	chr18	686582	1	SS3_PROX	SS3_PROX:INTRON	LINC00470	ENSG00000132204.14	ENST00000657423.1:ENST00000657618.1:ENST00000584090.5:ENST00000660947.1:ENST00000669242.1:ENST00000660475.1:ENST00000653775.1:ENST00000661931.1:ENST00000412816.7:ENST00000577867.5:ENST00000584492.5:ENST00000667416.1:ENST00000661852.1:ENST00000657919.1:ENST00000661646.1:ENST00000667776.1:ENST00000654559.1:ENST00000661233.1:ENST00000653213.1:ENST00000659094.1:ENST00000660964.1:ENST00000577403.6:ENST00000660358.1:ENST00000669153.1:ENST00000657121.1:ENST00000655957.1:ENST00000659289.1:ENST00000665133.1:ENST00000671558.1:ENST00000666542.1:ENST00000663512.1:ENST00000582862.6:ENST00000578835.5:ENST00000669312.1:ENST00000581430.5:ENST00000581212.1:ENST00000658090.1:ENST00000667225.1	lncRNA	lncRNA	lncRNA	lncRNA	14	89	2	1.2095	1.332475	1.45545	0.0550293	0.0387769	0.183821	0.143072
chr17	82574463	82574563	6693159	0	+	0.54	(0.515,0.57]	chr17	654652	22	INTRON	INTRON	FOXK2	ENSG00000141568.21	ENST00000473637.6:ENST00000335255.10:ENST00000531030.5:ENST00000526383.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	13	68	2	1.22131	1.33235	1.44339	0.0614604	0.0352285	0.173483	0.150284
chr1	112701376	112701460	523614	0	-	0.607143	(0.57,1]	chr1	61619	4	UTR3	UTR3:EXON_MRNA	RHOC	ENSG00000155366.17	ENST00000369633.6:ENST00000369642.7:ENST00000339083.12:ENST00000285735.6:ENST00000468093.5:ENST00000369638.6:ENST00000369637.5:ENST00000369636.6:ENST00000473074.1:ENST00000484280.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	20	62	2	1.29703	1.332065	1.3671	0.0263884	0.025683	0.133676	0.120594
chr16	85593825	85593925	6415770	0	+	0.58	(0.57,1]	chr16	615470	371	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	17	52	2	1.11346	1.3317	1.54994	0.0586217	0.0186013	0.189823	0.108861
chr1	246920072	246920171	681844	0	-	0.434343	(0.408,0.44]	chr1	80043	13	INTRON	INTRON	AHCTF1	ENSG00000153207.16	ENST00000648844.2:ENST00000326225.3:ENST00000366508.5	protein_coding	protein_coding	protein_coding	protein_coding	17	103	2	1.24825	1.33152	1.41479	0.0375059	0.0358053	0.156054	0.138791
chr2	151421762	151421860	893327	0	+	0.27551	[0,0.28]	chr2	98900	10	INTRON	INTRON	RIF1	ENSG00000080345.18	ENST00000453091.6:ENST00000428287.6:ENST00000444746.7:ENST00000243326.9:ENST00000414861.6:ENST00000430328.6:ENST00000498041.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	14	129	2	1.31372	1.331045	1.34837	0.0619737	0.0470905	0.17456	0.168569
chr3	37270137	37270237	1396023	0	+	0.46	(0.44,0.476]	chr3	146325	28	INTRON	INTRON	GOLGA4	ENSG00000144674.17	ENST00000435830.6:ENST00000444882.5:ENST00000356847.8:ENST00000450863.6:ENST00000361924.7:ENST00000429018.5:ENST00000431105.1:ENST00000419177.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	21	124	2	1.17966	1.3304399999999998	1.48122	0.0365156	0.0238302	0.153822	0.118976
chr12	93387251	93387351	5189034	0	+	0.28	[0,0.28]	chr12	490794	17	INTRON	INTRON	NUDT4	ENSG00000173598.14	ENST00000337179.9:ENST00000415493.7:ENST00000549992.5:ENST00000550056.5:ENST00000547014.5:ENST00000548662.5:ENST00000546925.1	protein_coding	protein_coding	protein_coding	protein_coding	17	130	2	1.06605	1.330085	1.59412	0.0729426	0.0617415	0.193423	0.189278
chr2	107725546	107725646	1205805	0	-	0.33	(0.32,0.35]	chr2	128532	79	INTRON	INTRON	LINC01885:ENSG00000286769	ENSG00000237880.2:ENSG00000286769.1	ENST00000654481.1:ENST00000669817.1	lncRNA	lncRNA	lncRNA	lncRNA	19	132	2	1.08177	1.329475	1.57718	0.0588198	0.0232145	0.189982	0.118148
chr3	196079963	196080061	1897539	0	-	0.326531	(0.32,0.35]	chr3	189991	25	INTRON	INTRON	TFRC	ENSG00000072274.13	ENST00000420415.5:ENST00000360110.9:ENST00000392396.7:ENST00000421258.1:ENST00000464011.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	22	156	2	1.19117	1.32878	1.46639	0.0673949	0.0116228	0.183375	0.0962115
chr5	79612891	79612983	2398727	0	+	0.413043	(0.408,0.44]	chr5	231668	6	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TENT2	ENSG00000164329.14	ENST00000505571.5:ENST00000423041.6:ENST00000504233.5:ENST00000453514.6:ENST00000428308.6:ENST00000515807.5:ENST00000502269.1:ENST00000296783.7:ENST00000514095.5:ENST00000508620.5:ENST00000503620.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	17	103	2	1.16197	1.328295	1.49462	0.050612	0.027357	0.17547	0.123904
chr7	119734630	119734730	3628684	0	-	0.34	(0.32,0.35]	chr7	337319	293	INTRON	INTRON	LINC02476	ENSG00000225546.6	ENST00000660268.1:ENST00000431071.5	lncRNA	lncRNA	lncRNA	lncRNA	22	157	2	1.28804	1.328195	1.36835	0.0410461	0.0209319	0.1451	0.122348
chr22	38684137	38684236	7514288	0	+	0.444444	(0.44,0.476]	chr22	767589	4	UTR3	UTR3:EXON_MRNA	TOMM22	ENSG00000100216.6	ENST00000216034.6:ENST00000492561.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	13	81	2	1.25386	1.32799	1.40212	0.0524678	0.0512703	0.178047	0.158081
chr21	38116810	38116910	7464054	0	-	0.43	(0.408,0.44]	chr21	760303	171	INTRON	INTRON	DSCR4	ENSG00000184029.9	ENST00000398948.5:ENST00000328264.7:ENST00000482032.1	lncRNA	lncRNA	lncRNA	lncRNA	19	109	2	1.11178	1.3277999999999999	1.54382	0.046733	0.0284747	0.167661	0.12666
chr14	69769561	69769651	5777191	0	+	0.511111	(0.476,0.515]	chr14	547360	1	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	SRSF5	ENSG00000100650.16	ENST00000553521.5:ENST00000554465.5:ENST00000394366.6:ENST00000553369.5:ENST00000557154.6:ENST00000553635.5:ENST00000556184.5:ENST00000557460.5:ENST00000556587.5:ENST00000555547.5:ENST00000554021.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	30	183	2	0.998314	1.327707	1.6571	0.0703845	0.00336089	0.184298	0.0532154
chr22	16607382	16607482	7473414	0	+	0.39	(0.378,0.408]	chr22	761972	48	INTRON	INTRON	TPTEP1:ENSG00000283633	ENSG00000100181.22:ENSG00000283633.1	ENST00000558085.6:ENST00000400593.6:ENST00000592918.5:ENST00000592107.5:ENST00000426585.5:ENST00000591299.1	lncRNA	lncRNA	lncRNA:transcribed_unprocessed_pseudogene	lncRNA:processed_transcript	19	113	2	1.14171	1.32759	1.51347	0.0424329	0.0322039	0.161763	0.132543
chr11	768451	768549	4889638	0	-	0.397959	(0.378,0.408]	chr11	457802	12	UTR3	UTR3:EXON_MRNA:INTRON	GATD1	ENSG00000177225.17	ENST00000465313.6:ENST00000319863.13:ENST00000397472.6:ENST00000528309.5:ENST00000354286.8:ENST00000526325.5:ENST00000526650.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	17	110	2	1.30976	1.3269250000000001	1.34409	0.0395315	0.0347772	0.161534	0.137301
chr8	23569653	23569751	3715510	0	+	0.387755	(0.378,0.408]	chr8	345238	8	INTRON	INTRON	SLC25A37	ENSG00000147454.14	ENST00000519973.6:ENST00000290075.10:ENST00000417331.6:ENST00000518881.5:ENST00000523930.1:ENST00000523883.5:ENST00000522164.5:ENST00000521637.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	105	647	2	1.26622	1.32689	1.38756	0.00755905	0.00755652	0.0773151	0.0749063
chr8	23567969	23568065	3715491	0	+	0.46875	(0.44,0.476]	chr8	345233	13	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	SLC25A37	ENSG00000147454.14	ENST00000519973.6:ENST00000290075.10:ENST00000417331.6:ENST00000518881.5:ENST00000520654.1:ENST00000523930.1:ENST00000523883.5:ENST00000522164.5:ENST00000521637.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	71	418	2	1.24502	1.3268849999999999	1.40875	0.0100912	0.00815319	0.088508	0.0766625
chr1	70229419	70229510	142675	0	+	0.285714	(0.28,0.32]	chr1	15986	5	INTRON	INTRON	SRSF11	ENSG00000116754.14	ENST00000370951.5:ENST00000687381.1:ENST00000370950.7:ENST00000475204.5:ENST00000370949.2:ENST00000395136.7:ENST00000473950.5:ENST00000469170.5:ENST00000486667.5:ENST00000481648.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	26	202	2	1.20225	1.3267600000000002	1.45127	0.0530521	0.0125306	0.162244	0.0978719
chr22	21788908	21789008	7560595	0	-	0.34	(0.32,0.35]	chr22	773369	1	SS3_PROX	SS3_PROX:INTRON	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	15	106	2	1.29192	1.32656	1.3612	0.0548037	0.0384161	0.165463	0.158985
chr7	100680275	100680371	3587377	0	-	0.520833	(0.515,0.57]	chr7	334564	9	UTR3	UTR3:EXON_MRNA	GIGYF1	ENSG00000146830.11	ENST00000678049.1:ENST00000646601.1:ENST00000275732.5	protein_coding	protein_coding	protein_coding	protein_coding	17	87	2	1.09474	1.32619	1.55764	0.0639026	0.0183076	0.177824	0.11576
chr13	110901689	110901788	5650512	0	-	0.464646	(0.44,0.476]	chr13	538370	6	INTRON	INTRON	ANKRD10	ENSG00000088448.14	ENST00000267339.6:ENST00000489973.6:ENST00000310847.8:ENST00000465753.1:ENST00000494859.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	63	369	2	1.18357	1.3252700000000002	1.46697	0.0145441	0.00701205	0.105673	0.0718189
chr2	61388399	61388498	1129723	0	-	0.414141	(0.408,0.44]	chr2	121474	47	INTRON	INTRON	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000453133.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	17	96	2	1.07414	1.324905	1.57567	0.0572282	0.033074	0.18676	0.133898
chr19	3384040	3384140	6999801	0	+	0.5	(0.476,0.515]	chr19	694173	14	INTRON	INTRON	NFIC	ENSG00000141905.19	ENST00000641145.1:ENST00000589123.5:ENST00000395111.7:ENST00000586919.5:ENST00000341919.7:ENST00000443272.3:ENST00000590282.5	protein_coding	protein_coding	protein_coding	protein_coding	17	103	2	1.19688	1.324555	1.45223	0.0488979	0.0284116	0.154824	0.138377
chr6	31836842	31836940	2843855	0	+	0.479592	(0.476,0.515]	chr6	267915	1	EXON_LNCRNA	EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SNHG32	ENSG00000204387.14	ENST00000375640.7:ENST00000375641.6:ENST00000375635.6:ENST00000375638.7:ENST00000648677.1:ENST00000375642.6:ENST00000614363.4:ENST00000395789.5:ENST00000375633.5:ENST00000395788.3	lncRNA	lncRNA	lncRNA	lncRNA	26	154	2	1.11028	1.324255	1.53823	0.0418559	0.0141306	0.147284	0.103436
chr8	102357074	102357174	4012195	0	-	0.41	(0.408,0.44]	chr8	367218	96	INTRON	INTRON	UBR5	ENSG00000104517.13	ENST00000520539.6:ENST00000220959.8:ENST00000521922.5	protein_coding	protein_coding	protein_coding	protein_coding	13	75	2	1.15262	1.3236599999999998	1.4947	0.0580417	0.0566065	0.188651	0.167352
chr7	99574573	99574672	3362859	0	+	0.262626	[0,0.28]	chr7	314159	11	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ZNF655	ENSG00000197343.11	ENST00000252713.9:ENST00000425063.5:ENST00000424881.5:ENST00000394163.2:ENST00000494357.1:ENST00000419215.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	13	118	2	1.27362	1.323595	1.37357	0.0785647	0.0435853	0.19821	0.162255
chr16	89486440	89486540	6543561	0	-	0.39	(0.378,0.408]	chr16	634281	548	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	28	172	2	1.17392	1.3234650000000001	1.47301	0.0292599	0.0173342	0.141862	0.104112
chr9	131145436	131145532	4215827	0	+	0.447917	(0.44,0.476]	chr9	386560	2	INTRON	INTRON	NUP214	ENSG00000126883.19	ENST00000695497.1:ENST00000695498.1:ENST00000695496.1:ENST00000695495.1:ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000651022.1:ENST00000530863.1:ENST00000525980.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	21	128	2	1.29109	1.32258	1.35407	0.0325905	0.0253412	0.133687	0.133676
chr11	5503353	5503452	4898256	0	-	0.242424	[0,0.28]	chr11	459195	341	INTRON	INTRON	HBG2:ENSG00000239920:HBE1:OR51B5	ENSG00000196565.15:ENSG00000239920.2:ENSG00000213931.7:ENSG00000167355.8	ENST00000380252.6:ENST00000380259.7:ENST00000292896.3:ENST00000380237.5:ENST00000420726.6:ENST00000420465.6:ENST00000415970.6:ENST00000418729.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:nonsense_mediated_decay:processed_transcript	13	118	2	1.29677	1.32257	1.34837	0.0741215	0.0470905	0.191297	0.168569
chr11	47527372	47527472	4950145	0	-	0.38	(0.378,0.408]	chr11	464246	27	INTRON	INTRON	CELF1	ENSG00000149187.19	ENST00000310513.10:ENST00000687097.1:ENST00000531165.5:ENST00000530151.5:ENST00000525841.5:ENST00000526419.1	protein_coding	protein_coding	protein_coding	protein_coding	14	82	2	1.12252	1.322355	1.52219	0.0581283	0.0531838	0.188652	0.162538
chr16	75577539	75577625	6391142	0	+	0.348837	(0.32,0.35]	chr16	614587	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	GABARAPL2	ENSG00000034713.8	ENST00000037243.7:ENST00000563744.1:ENST00000565985.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	16	114	2	1.22792	1.32192	1.41592	0.0684955	0.0246865	0.184298	0.131869
chr17	30748237	30748337	6589970	0	+	0.52	(0.515,0.57]	chr17	640860	45	INTRON	INTRON	SUZ12P1	ENSG00000264538.7	ENST00000578070.5:ENST00000579526.5:ENST00000690405.1:ENST00000497969.6:ENST00000578195.6:ENST00000582557.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	13	67	2	1.14686	1.32119	1.49552	0.0671586	0.0385038	0.183051	0.159277
chr21	38107825	38107925	7463964	0	-	0.4	(0.378,0.408]	chr21	760303	81	INTRON	INTRON	DSCR4	ENSG00000184029.9	ENST00000398948.5:ENST00000328264.7:ENST00000482032.1	lncRNA	lncRNA	lncRNA	lncRNA	19	120	2	1.1099	1.32119	1.53248	0.072771	0.0124864	0.188931	0.0975309
chr14	21245453	21245552	5834926	0	-	0.373737	(0.35,0.378]	chr14	554459	86	INTRON	INTRON	HNRNPC	ENSG00000092199.19	ENST00000336053.10:ENST00000553300.6:ENST00000554969.5:ENST00000556142.5:ENST00000554455.5:ENST00000430246.6:ENST00000553753.5:ENST00000555309.5:ENST00000555914.5:ENST00000557442.5:ENST00000556628.5:ENST00000556513.5:ENST00000555883.5:ENST00000557201.5:ENST00000556897.5:ENST00000420743.6:ENST00000554539.5:ENST00000554383.5:ENST00000555215.5:ENST00000555137.5:ENST00000554891.5:ENST00000556226.5:ENST00000555176.5:ENST00000553614.5:ENST00000557336.1:ENST00000557768.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	23	149	2	1.13415	1.320925	1.5077	0.0416889	0.0202975	0.161736	0.110276
chr6	26196168	26196264	3071003	0	-	0.5	(0.476,0.515]	chr6	285430	7	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ENSG00000282988	ENSG00000282988.2	ENST00000635641.1:ENST00000650491.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	23	140	2	1.30121	1.320735	1.34026	0.0268263	0.0261325	0.13507	0.122221
chr1	71064577	71064676	482853	0	-	0.343434	(0.32,0.35]	chr1	57837	14	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ZRANB2	ENSG00000132485.14	ENST00000370920.8:ENST00000477096.1:ENST00000254821.10	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	20	143	2	1.21476	1.32031	1.42586	0.051782	0.020823	0.159306	0.122348
chr1	35921297	35921396	71045	0	+	0.515152	(0.476,0.515]	chr1	9124	17	UTR3	UTR3:EXON_MRNA	AGO1	ENSG00000092847.13	ENST00000373204.6:ENST00000674426.1:ENST00000674304.1	protein_coding	protein_coding	protein_coding	protein_coding	32	194	2	0.973937	1.3201085	1.66628	0.0587654	0.00509232	0.189982	0.0625139
chr11	65498877	65498976	4806132	0	+	0.373737	(0.35,0.378]	chr11	446569	13	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MALAT1	ENSG00000251562.9	ENST00000619449.2:ENST00000534336.1:ENST00000688218.1:ENST00000689729.1:ENST00000693503.1:ENST00000692086.1:ENST00000685846.1:ENST00000690116.1	lncRNA	lncRNA	lncRNA	lncRNA	39	255	2	1.18677	1.31989	1.45301	0.0367195	0.00653046	0.138959	0.0735539
chr19	11117597	11117697	7017116	0	+	0.47	(0.44,0.476]	chr19	697485	2	INTRON	INTRON	LDLR	ENSG00000130164.14	ENST00000557933.5:ENST00000558518.6:ENST00000545707.5:ENST00000535915.5:ENST00000455727.6:ENST00000558013.5:ENST00000252444.9:ENST00000559340.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	18	107	2	1.06715	1.319885	1.57262	0.0639951	0.0230575	0.177882	0.126603
chrX	48523698	48523771	7658433	0	+	0.369863	(0.35,0.378]	chrX	783765	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	EBP	ENSG00000147155.11	ENST00000276096.10:ENST00000498425.1:ENST00000495186.6:ENST00000446158.5:ENST00000414061.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	45	275	2	1.05666	1.3194599999999999	1.58226	0.0311302	0.0088958	0.143672	0.0798247
chr1	30986519	30986619	412097	0	-	0.33	(0.32,0.35]	chr1	49701	45	INTRON	INTRON	PUM1	ENSG00000134644.16	ENST00000426105.7:ENST00000373747.7:ENST00000257075.9:ENST00000424085.6:ENST00000525843.5:ENST00000440538.6:ENST00000498419.5:ENST00000373741.8:ENST00000373742.6:ENST00000532678.1:ENST00000526215.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	19	127	2	1.11931	1.3193700000000002	1.51943	0.0484647	0.0340974	0.172522	0.135053
chr16	31181997	31182097	6340571	0	+	0.47	(0.44,0.476]	chr16	608318	2	SS3_PROX	SS3_PROX:INTRON	FUS	ENSG00000089280.19	ENST00000566605.5:ENST00000254108.12:ENST00000380244.7:ENST00000487045.6:ENST00000487509.6:ENST00000568685.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	16	100	2	1.30265	1.3193700000000002	1.33609	0.0510862	0.0345531	0.176696	0.136583
chr3	152314234	152314334	1535441	0	+	0.37	(0.35,0.378]	chr3	159996	119	INTRON	INTRON	MBNL1	ENSG00000152601.18	ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000495875.6:ENST00000324210.10:ENST00000493459.5:ENST00000459747.1:ENST00000460591.5:ENST00000545754.5:ENST00000357472.7:ENST00000324196.9:ENST00000498502.5:ENST00000463374.5:ENST00000485910.5:ENST00000465907.6:ENST00000492948.5:ENST00000485509.5:ENST00000464596.5	protein_coding	protein_coding	protein_coding	protein_coding	22	144	2	1.24741	1.319365	1.39132	0.0491945	0.016513	0.155556	0.110409
chr17	32378494	32378594	6598280	0	+	0.29	(0.28,0.32]	chr17	641948	52	UTR3	UTR3:EXON_MRNA	ZNF207	ENSG00000010244.19	ENST00000394670.9:ENST00000577908.5:ENST00000581531.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	34	258	2	1.02395	1.318575	1.6132	0.0500281	0.0108571	0.17488	0.0873034
chr14	102605920	102606020	5822666	0	+	0.48	(0.476,0.515]	chr14	552490	122	INTRON	INTRON	RCOR1	ENSG00000089902.10	ENST00000262241.7	protein_coding	protein_coding	protein_coding	protein_coding	12	73	2	1.27239	1.318555	1.36472	0.0651036	0.0467985	0.179712	0.167716
chr4	110049439	110049539	2226236	0	-	0.34	(0.32,0.35]	chr4	218000	37	UTR3	UTR3:EXON_MRNA	ELOVL6	ENSG00000170522.10	ENST00000394607.7:ENST00000302274.8	protein_coding	protein_coding	protein_coding	protein_coding	17	123	2	1.18443	1.317805	1.45118	0.0548155	0.0302091	0.183123	0.129709
chr8	23568671	23568769	3715500	0	+	0.571429	(0.57,1]	chr8	345237	4	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	SLC25A37	ENSG00000147454.14	ENST00000519973.6:ENST00000290075.10:ENST00000417331.6:ENST00000518881.5:ENST00000520654.1:ENST00000523930.1:ENST00000523883.5:ENST00000522164.5:ENST00000521637.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	67	201	2	1.22121	1.3177249999999998	1.41424	0.00919239	0.00295138	0.0815422	0.0498678
chr4	55423207	55423302	1960872	0	+	0.336842	(0.32,0.35]	chr4	196578	2	EXON_MRNA	EXON_MRNA:INTRON	TMEM165	ENSG00000134851.13	ENST00000381334.10:ENST00000506198.5:ENST00000508404.5:ENST00000514904.5:ENST00000508561.5:ENST00000608091.1:ENST00000509575.1:ENST00000506103.2:ENST00000515591.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	12	82	2	1.1708	1.3174700000000001	1.46414	0.065059	0.0641583	0.199375	0.179599
chr11	61789139	61789235	4957279	0	-	0.395833	(0.378,0.408]	chr11	465921	3	UTR3	UTR3:EXON_MRNA:INTRON	TMEM258	ENSG00000134825.16	ENST00000535042.1:ENST00000537328.6:ENST00000535297.1:ENST00000257262.12:ENST00000545210.5:ENST00000541893.5:ENST00000543510.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	19	108	2	1.08185	1.3161100000000001	1.55037	0.0491612	0.0365151	0.174117	0.138959
chr1	244844363	244844461	672883	0	-	0.367347	(0.35,0.378]	chr1	79586	39	UTR3	UTR3:EXON_MRNA:INTRON	HNRNPU	ENSG00000153187.20	ENST00000475997.6:ENST00000366527.4:ENST00000649899.1:ENST00000638230.1:ENST00000640657.1	protein_coding	retained_intron	protein_coding	retained_intron:nonsense_mediated_decay	39	251	2	1.23972	1.316085	1.39245	0.0338744	0.00808754	0.134508	0.0808032
chr6	49636712	49636812	3105459	0	-	0.4	(0.378,0.408]	chr6	290682	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	RHAG	ENSG00000112077.18	ENST00000371175.10:ENST00000646272.1:ENST00000646939.1:ENST00000646963.1:ENST00000642530.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	78	2	1.23968	1.315785	1.39189	0.0751636	0.043845	0.193731	0.162255
chr22	20513015	20513114	7479401	0	+	0.424242	(0.408,0.44]	chr22	762951	42	INTRON	INTRON	MED15	ENSG00000099917.17	ENST00000445987.5:ENST00000444094.5:ENST00000414658.5:ENST00000486656.5:ENST00000433831.5:ENST00000432052.5:ENST00000292733.11:ENST00000263205.11:ENST00000477824.5:ENST00000406969.5:ENST00000382974.6:ENST00000441501.5:ENST00000438962.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	16	98	2	1.28254	1.3157649999999999	1.34899	0.047205	0.0342016	0.152612	0.146891
chr1	31937154	31937254	414426	0	-	0.31	(0.28,0.32]	chr1	49942	11	INTRON	INTRON	PTP4A2	ENSG00000184007.22	ENST00000647444.2:ENST00000649841.1:ENST00000468531.1:ENST00000534796.5:ENST00000532289.1:ENST00000526960.1:ENST00000524384.5:ENST00000528840.1:ENST00000494444.2:ENST00000529477.5:ENST00000533408.1:ENST00000475464.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	21	155	2	1.16681	1.31513	1.46345	0.0404768	0.0362197	0.161534	0.138959
chr11	65425469	65425568	4805797	0	+	0.454545	(0.44,0.476]	chr11	446554	28	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000499732.3:ENST00000687132.1:ENST00000501122.2:ENST00000685861.1:ENST00000601801.3:ENST00000670617.1:ENST00000646243.1:ENST00000645023.1:ENST00000693290.1:ENST00000616315.2	lncRNA	lncRNA	lncRNA	lncRNA	172	958	2	1.08211	1.31494	1.54777	0.0147566	0.00261265	0.106702	0.0455413
chr16	10386400	10386493	6286277	0	+	0.505376	(0.476,0.515]	chr16	601953	4	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	ATF7IP2	ENSG00000166669.14	ENST00000564797.5:ENST00000396559.5:ENST00000396560.6:ENST00000562527.5:ENST00000561932.5:ENST00000566316.5:ENST00000543967.5:ENST00000562102.6:ENST00000535850.5:ENST00000569900.5:ENST00000569939.5:ENST00000562396.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	15	91	2	1.16233	1.31494	1.46755	0.0635535	0.0294104	0.198287	0.128055
chr6	31756916	31757016	2843665	0	+	0.51	(0.476,0.515]	chr6	267820	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MSH5:MSH5-SAPCD1	ENSG00000204410.16:ENSG00000255152.8	ENST00000375755.8:ENST00000375750.9:ENST00000650702.1:ENST00000493662.6:ENST00000375703.7:ENST00000375740.7:ENST00000423982.6:ENST00000463144.5:ENST00000450148.5:ENST00000468602.5:ENST00000468136.5:ENST00000395853.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	53	314	2	1.1733	1.314875	1.45645	0.0212662	0.00653447	0.11332	0.0735539
chr16	81447238	81447338	6405021	0	+	0.44	(0.408,0.44]	chr16	615026	13	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8	protein_coding	protein_coding	protein_coding	protein_coding	12	74	2	1.17742	1.31452	1.45162	0.0738735	0.0451203	0.190914	0.163518
chrX	73843532	73843632	7837959	0	-	0.42	(0.408,0.44]	chrX	799611	62	EXON_LNCRNA	EXON_LNCRNA:INTRON	XIST	ENSG00000229807.13	ENST00000669898.1:ENST00000650627.1:ENST00000434839.3:ENST00000429829.6:ENST00000650366.1:ENST00000648607.1:ENST00000650186.1:ENST00000635841.2:ENST00000650637.1:ENST00000648970.1:ENST00000648991.1:ENST00000666309.1	lncRNA	lncRNA	lncRNA	lncRNA	27	150	2	1.03901	1.314505	1.59	0.0443425	0.0161174	0.162392	0.101453
chr8	100713996	100714092	4005507	0	-	0.458333	(0.44,0.476]	chr8	366609	3	INTRON	INTRON	PABPC1	ENSG00000070756.17	ENST00000677140.1:ENST00000677787.1:ENST00000678709.1:ENST00000676662.1:ENST00000677765.1:ENST00000677892.1:ENST00000522720.2:ENST00000520804.2:ENST00000521865.6:ENST00000677478.1:ENST00000677380.1:ENST00000520142.2:ENST00000677775.1:ENST00000678954.1:ENST00000676655.1:ENST00000676976.1:ENST00000318607.10:ENST00000679197.1:ENST00000519100.6:ENST00000519004.5:ENST00000522387.5:ENST00000522658.6:ENST00000678822.1:ENST00000523555.6:ENST00000610907.2:ENST00000519596.5:ENST00000519622.5:ENST00000517921.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	13	79	2	1.16973	1.314465	1.4592	0.0750733	0.0342963	0.193571	0.147255
chr16	58618187	58618286	6496266	0	-	0.474747	(0.44,0.476]	chr16	628638	183	INTRON	INTRON	CNOT1	ENSG00000125107.19	ENST00000317147.10:ENST00000569240.5:ENST00000567188.5:ENST00000441024.6:ENST00000565605.5:ENST00000564557.1:ENST00000569916.1:ENST00000565697.1:ENST00000569020.5:ENST00000568158.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	12	72	2	1.28614	1.314175	1.34221	0.0656882	0.0497218	0.181162	0.17488
chr7	131489805	131489904	3418089	0	+	0.323232	(0.32,0.35]	chr7	319295	22	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	MKLN1	ENSG00000128585.18	ENST00000352689.11:ENST00000498778.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	17	121	2	1.2607	1.314145	1.36759	0.0550548	0.0294508	0.165463	0.142135
chr19	34401224	34401323	7052869	0	+	0.545455	(0.515,0.57]	chr19	703434	13	UTR3	UTR3:EXON_MRNA	GPI	ENSG00000105220.17	ENST00000415930.8:ENST00000356487.11	protein_coding	protein_coding	protein_coding	protein_coding	46	253	2	0.9517	1.313345	1.67499	0.0541749	0.00174975	0.18215	0.0376488
chr17	30855916	30856006	6590669	0	+	0.333333	(0.32,0.35]	chr17	640954	2	INTRON	INTRON	ATAD5	ENSG00000176208.9	ENST00000321990.5:ENST00000578295.5:ENST00000585133.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:non_stop_decay	28	190	2	1.03375	1.3133	1.59285	0.0507138	0.0139876	0.175757	0.0959618
chr16	29510692	29510791	6470672	0	-	0.474747	(0.44,0.476]	chr16	625147	48	INTRON	INTRON	ENSG00000288632	ENSG00000288632.1	ENST00000675579.1	lncRNA	lncRNA	lncRNA	lncRNA	18	108	2	1.09694	1.3130000000000002	1.52906	0.0676221	0.017448	0.183981	0.112716
chr9	4737650	4737749	4228894	0	-	0.50505	(0.476,0.515]	chr9	388786	147	INTRON	INTRON	AK3	ENSG00000147853.17	ENST00000381809.8:ENST00000611749.4:ENST00000359883.6:ENST00000447596.4	protein_coding	protein_coding	protein_coding	protein_coding	10	61	2	1.28655	1.3128700000000002	1.33919	0.075974	0.06316	0.197199	0.194842
chr12	70285199	70285299	5166852	0	+	0.46	(0.44,0.476]	chr12	489382	4	SS3_PROX	SS3_PROX:INTRON	CNOT2	ENSG00000111596.14	ENST00000547780.5:ENST00000418359.7:ENST00000552319.5:ENST00000550160.5:ENST00000551661.5:ENST00000551132.5:ENST00000553078.5:ENST00000548021.5:ENST00000550641.6:ENST00000229195.8:ENST00000552915.5:ENST00000549443.5:ENST00000548741.5:ENST00000552483.5:ENST00000552422.5:ENST00000547321.5:ENST00000553020.5:ENST00000548159.5:ENST00000549750.5:ENST00000551043.5:ENST00000548599.5:ENST00000550194.5:ENST00000551873.5:ENST00000547867.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	15	86	2	1.13029	1.3128	1.49531	0.0562597	0.0421587	0.184165	0.148082
chr1	32363160	32363257	414870	0	-	0.597938	(0.57,1]	chr1	50027	8	EXON_MRNA	EXON_MRNA:INTRON	FAM229A	ENSG00000225828.2	ENST00000416512.1:ENST00000415596.1	protein_coding	retained_intron	protein_coding	retained_intron:processed_transcript	18	55	2	1.25794	1.3125200000000001	1.3671	0.0391392	0.0263884	0.143072	0.133676
chr3	6514263	6514363	1356383	0	+	0.23	[0,0.28]	chr3	142508	11	INTRON	INTRON	ENSG00000189229	ENSG00000189229.12	ENST00000660158.1:ENST00000433639.1:ENST00000655754.1:ENST00000653839.1:ENST00000662846.1:ENST00000659876.1:ENST00000414438.2:ENST00000658468.1:ENST00000414603.1:ENST00000669512.1:ENST00000667028.1:ENST00000655541.1:ENST00000668643.1:ENST00000671568.1:ENST00000671036.1:ENST00000669798.1:ENST00000655753.1:ENST00000655856.1:ENST00000658398.1:ENST00000661518.1:ENST00000661279.1:ENST00000655495.1:ENST00000663041.1:ENST00000659827.1:ENST00000667716.1:ENST00000662508.1:ENST00000668416.1:ENST00000658133.1:ENST00000659651.1:ENST00000342990.4:ENST00000660054.1:ENST00000671370.1	lncRNA	lncRNA	lncRNA	lncRNA	17	155	2	1.2023	1.31249	1.42268	0.0633906	0.037357	0.177047	0.155878
chr3	152325920	152326020	1535558	0	+	0.39	(0.378,0.408]	chr3	159996	236	INTRON	INTRON	MBNL1	ENSG00000152601.18	ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000495875.6:ENST00000324210.10:ENST00000493459.5:ENST00000459747.1:ENST00000460591.5:ENST00000545754.5:ENST00000357472.7:ENST00000324196.9:ENST00000498502.5:ENST00000463374.5:ENST00000485910.5:ENST00000465907.6:ENST00000492948.5:ENST00000485509.5:ENST00000464596.5	protein_coding	protein_coding	protein_coding	protein_coding	33	204	2	1.19587	1.3121049999999999	1.42834	0.0380067	0.00855634	0.141668	0.083729
chr1	246919673	246919773	681840	0	-	0.36	(0.35,0.378]	chr1	80043	9	INTRON	INTRON	AHCTF1	ENSG00000153207.16	ENST00000648844.2:ENST00000326225.3:ENST00000366508.5	protein_coding	protein_coding	protein_coding	protein_coding	17	111	2	1.16314	1.311975	1.46081	0.0516919	0.0324753	0.176696	0.13353
chr9	131142981	131143080	4215802	0	+	0.40404	(0.378,0.408]	chr9	386555	1	INTRON	INTRON	NUP214	ENSG00000126883.19	ENST00000695497.1:ENST00000695498.1:ENST00000695496.1:ENST00000695495.1:ENST00000695494.1:ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000525561.2:ENST00000651022.1:ENST00000695499.1:ENST00000530863.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	64	397	2	1.27488	1.31087	1.34686	0.01546	0.00744758	0.100909	0.0772645
chr11	47726123	47726220	4950984	0	-	0.391753	(0.378,0.408]	chr11	464381	15	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	FNBP4	ENSG00000109920.13	ENST00000263773.10:ENST00000530207.1:ENST00000525792.5:ENST00000531394.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	19	115	2	1.16075	1.310835	1.46092	0.0427917	0.0314415	0.162255	0.13151
chr22	16609766	16609865	7473438	0	+	0.737374	(0.57,1]	chr22	761972	72	INTRON	INTRON	TPTEP1:ENSG00000283633	ENSG00000100181.22:ENSG00000283633.1	ENST00000558085.6:ENST00000400593.6:ENST00000592918.5:ENST00000592107.5:ENST00000426585.5:ENST00000591299.1	lncRNA	lncRNA	lncRNA:transcribed_unprocessed_pseudogene	lncRNA:processed_transcript	16	49	2	1.25934	1.31049	1.36164	0.0453452	0.0321033	0.149888	0.145026
chr1	39560807	39560906	427613	0	-	0.343434	(0.32,0.35]	chr1	51882	2	UTR3	UTR3:EXON_MRNA	PABPC4	ENSG00000090621.15	ENST00000677006.1:ENST00000527718.2:ENST00000676859.1:ENST00000372858.8:ENST00000372856.7:ENST00000372857.7:ENST00000372862.7:ENST00000678469.1:ENST00000677708.1:ENST00000678028.1:ENST00000468476.1:ENST00000437136.5:ENST00000492468.5:ENST00000482028.5:ENST00000676523.1:ENST00000677548.1:ENST00000678980.1:ENST00000677244.1:ENST00000677609.1:ENST00000679246.1:ENST00000678287.1:ENST00000678625.1:ENST00000470443.6:ENST00000677860.1:ENST00000676863.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	18	128	2	1.20429	1.310105	1.41592	0.0585512	0.0246865	0.167915	0.131869
chr22	49613746	49613846	7602218	0	-	0.51	(0.476,0.515]	chr22	778570	181	INTRON	INTRON	MIR3667HG	ENSG00000188511.13	ENST00000414287.5:ENST00000416411.1:ENST00000689875.1	lncRNA	lncRNA	lncRNA	lncRNA	18	107	2	1.23271	1.30999	1.38727	0.0397864	0.0327879	0.161534	0.133816
chr17	81887932	81888031	6850203	0	-	0.20202	[0,0.28]	chr17	678399	2	UTR3	UTR3:EXON_MRNA	ALYREF	ENSG00000183684.8	ENST00000505490.3	protein_coding	protein_coding	protein_coding	protein_coding	33	288	2	1.10268	1.30972	1.51676	0.0433052	0.0191824	0.162255	0.108861
chr11	85989949	85990049	5014030	0	-	0.31	(0.28,0.32]	chr11	472942	3	SS5_PROX	SS5_PROX:INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000530692.5:ENST00000630913.2:ENST00000529760.5:ENST00000528398.5:ENST00000356360.9:ENST00000529016.5:ENST00000526961.5:ENST00000530542.1	protein_coding	protein_coding	protein_coding	protein_coding	32	243	2	1.28821	1.3096800000000002	1.33115	0.0353382	0.016434	0.137535	0.110004
chr1	150619032	150619132	551274	0	-	0.48	(0.476,0.515]	chr1	64776	174	INTRON	INTRON	ENSA	ENSG00000143420.19	ENST00000369016.8	protein_coding	protein_coding	protein_coding	protein_coding	13	78	2	1.23561	1.3093	1.38299	0.0722004	0.0361854	0.187533	0.152746
chr12	116236320	116236420	5425136	0	-	0.45	(0.44,0.476]	chr12	518282	1	SS5_PROX	SS5_PROX:INTRON	MED13L	ENSG00000123066.9	ENST00000281928.9:ENST00000650226.1:ENST00000548743.2:ENST00000647567.1:ENST00000551197.2:ENST00000649627.1:ENST00000648067.1:ENST00000650496.1:ENST00000648593.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	26	145	2	1.11393	1.30917	1.50441	0.0347532	0.0219054	0.148429	0.114982
chr6	4053862	4053960	2790035	0	+	0.285714	(0.28,0.32]	chr6	263541	6	INTRON	INTRON	PRPF4B	ENSG00000112739.17	ENST00000480058.5:ENST00000337659.11:ENST00000481109.5:ENST00000463634.6:ENST00000466185.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	20	152	2	1.2433	1.3090350000000002	1.37477	0.0414163	0.0354628	0.15111	0.146067
chr16	29510891	29510991	6470674	0	-	0.52	(0.515,0.57]	chr16	625147	50	INTRON	INTRON	ENSG00000288632	ENSG00000288632.1	ENST00000675579.1	lncRNA	lncRNA	lncRNA	lncRNA	17	89	2	1.27738	1.308415	1.33945	0.0499863	0.0273537	0.17488	0.123904
chr13	38362443	38362541	5469446	0	+	0.397959	(0.378,0.408]	chr13	524085	18	UTR3	UTR3:EXON_MRNA	UFM1	ENSG00000120686.12	ENST00000239878.9	protein_coding	protein_coding	protein_coding	protein_coding	30	186	2	1.21134	1.308395	1.40545	0.0359808	0.0116339	0.138959	0.0962115
chr16	89560680	89560773	6420873	0	+	0.645161	(0.57,1]	chr16	616308	1	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPL13	ENSG00000167526.14	ENST00000563749.1:ENST00000491523.5:ENST00000484610.5:ENST00000567815.5:ENST00000563270.5:ENST00000311528.10:ENST00000562879.5:ENST00000487034.5:ENST00000452368.7:ENST00000565571.5:ENST00000393099.3:ENST00000467736.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	56	165	2	1.2977	1.3082600000000002	1.31882	0.0113401	0.00476764	0.0886611	0.0636201
chrX	73846629	73846729	7837990	0	-	0.51	(0.476,0.515]	chrX	799611	93	EXON_LNCRNA	EXON_LNCRNA:INTRON	XIST	ENSG00000229807.13	ENST00000650627.1:ENST00000434839.3:ENST00000429829.6:ENST00000650186.1:ENST00000635841.2:ENST00000650637.1:ENST00000648970.1	lncRNA	lncRNA	lncRNA	lncRNA	37	209	2	1.06836	1.30823	1.5481	0.0334532	0.00957311	0.146709	0.0820838
chr3	196050464	196050562	1897210	0	-	0.408163	(0.378,0.408]	chr3	189885	13	UTR3	UTR3:EXON_MRNA:INTRON	TFRC	ENSG00000072274.13	ENST00000426789.5:ENST00000420415.5:ENST00000360110.9:ENST00000392396.7	protein_coding	protein_coding	protein_coding	protein_coding	35	216	2	1.14943	1.30808	1.46673	0.0280074	0.0125451	0.137011	0.0926667
chr21	37390096	37390196	7406455	0	+	0.42	(0.408,0.44]	chr21	754850	146	INTRON	INTRON	DYRK1A	ENSG00000157540.22	ENST00000646523.1:ENST00000647425.1:ENST00000647188.2:ENST00000647504.1:ENST00000644942.1:ENST00000338785.8:ENST00000643624.1:ENST00000643551.1:ENST00000426672.6:ENST00000398960.7	protein_coding	protein_coding	protein_coding	protein_coding	11	67	2	1.27662	1.30721	1.3378	0.0787183	0.050805	0.198567	0.175989
chr12	124782382	124782482	5445750	0	-	0.5	(0.476,0.515]	chr12	521215	3	SS5_PROX	SS5_PROX:INTRON	SCARB1	ENSG00000073060.17	ENST00000339570.9:ENST00000261693.11:ENST00000679605.1:ENST00000681686.1:ENST00000680926.1:ENST00000680556.1:ENST00000680982.1:ENST00000680596.1:ENST00000681555.1:ENST00000681788.1:ENST00000415380.6:ENST00000681117.1:ENST00000681499.1:ENST00000545305.1:ENST00000538291.5:ENST00000546215.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	15	86	2	1.20452	1.30701	1.4095	0.054012	0.04391	0.16443	0.162255
chr8	140522452	140522552	4075405	0	-	0.42	(0.408,0.44]	chr8	370170	24	UTR3	UTR3:EXON_MRNA	AGO2	ENSG00000123908.12	ENST00000220592.10	protein_coding	protein_coding	protein_coding	protein_coding	22	132	2	1.29397	1.306715	1.31946	0.0329343	0.0256769	0.133816	0.133676
chr1	37493569	37493668	423836	0	-	0.30303	(0.28,0.32]	chr1	51214	37	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	MEAF6	ENSG00000163875.16	ENST00000296214.10:ENST00000373075.6:ENST00000373074.5:ENST00000475828.5:ENST00000487788.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	20	154	2	1.28334	1.3058299999999998	1.32832	0.0490002	0.0285146	0.155141	0.138866
chr4	39766571	39766671	1953679	0	+	0.51	(0.476,0.515]	chr4	195650	54	INTRON	INTRON	UBE2K	ENSG00000078140.14	ENST00000510934.5:ENST00000261427.10:ENST00000438068.6:ENST00000513231.5:ENST00000503368.5:ENST00000445950.2:ENST00000510719.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	19	113	2	1.29706	1.30559	1.31412	0.0389894	0.0296012	0.143072	0.142135
chr1	20775093	20775182	389741	0	-	0.348315	(0.32,0.35]	chr1	46561	2	INTRON	INTRON	HP1BP3	ENSG00000127483.19	ENST00000438032.6:ENST00000312239.10:ENST00000419948.5:ENST00000424732.5:ENST00000417710.5	protein_coding	protein_coding	protein_coding	protein_coding	41	273	2	1.11445	1.3053599999999999	1.49627	0.0283036	0.0139778	0.137877	0.0959618
chr13	20022205	20022305	5453071	0	+	0.34	(0.32,0.35]	chr13	522478	22	INTRON	INTRON	ZMYM2	ENSG00000121741.17	ENST00000382874.6:ENST00000610343.5:ENST00000382871.3	protein_coding	protein_coding	protein_coding	protein_coding	11	76	2	1.22414	1.3048899999999999	1.38564	0.0793006	0.0625148	0.199711	0.195535
chr6	27131767	27131866	3072356	0	-	0.323232	(0.32,0.35]	chr6	285574	50	INTRON	INTRON	H2BC11	ENSG00000124635.9	ENST00000607124.1:ENST00000606923.1	protein_coding	protein_coding	protein_coding	protein_coding	29	198	2	1.225	1.3046000000000002	1.3842	0.0270654	0.0245985	0.131869	0.123904
chr19	57831660	57831760	7105844	0	+	0.44	(0.408,0.44]	chr19	713206	7	INTRON	INTRON	ENSG00000268750:ZNF587B	ENSG00000268750.7:ENSG00000269343.9	ENST00000597134.5:ENST00000651253.2:ENST00000596498.2:ENST00000593873.6:ENST00000603271.1:ENST00000594328.1:ENST00000598031.1:ENST00000442832.8:ENST00000594901.2:ENST00000604231.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	13	79	2	1.24904	1.303685	1.35833	0.055886	0.0512983	0.18407	0.158153
chr6	16147848	16147948	2825967	0	+	0.47	(0.44,0.476]	chr6	265339	12	UTR3	UTR3:EXON_MRNA	MYLIP	ENSG00000007944.15	ENST00000356840.8:ENST00000349606.4	protein_coding	protein_coding	protein_coding	protein_coding	27	155	2	1.14223	1.302975	1.46372	0.0326901	0.0191573	0.145164	0.108861
chr6	17652026	17652126	3065653	0	-	0.31	(0.28,0.32]	chr6	284823	1	SS3_PROX	SS3_PROX:INTRON	NUP153	ENSG00000124789.12	ENST00000613258.4:ENST00000537253.5:ENST00000262077.3	protein_coding	protein_coding	protein_coding	protein_coding	22	167	2	1.28334	1.30229	1.32124	0.0490002	0.0246035	0.155141	0.131869
chrX	13333951	13334050	7622289	0	+	0.40404	(0.378,0.408]	chrX	780326	1	EXON_LNCRNA	EXON_LNCRNA	LINC01203	ENSG00000226985.7	ENST00000669963.1	lncRNA	lncRNA	lncRNA	lncRNA	14	87	2	1.2095	1.30225	1.395	0.0550293	0.0467334	0.183821	0.151763
chr22	21825838	21825938	7560968	0	-	0.33	(0.32,0.35]	chr22	773388	176	INTRON	INTRON	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	12	86	2	1.27507	1.302195	1.32932	0.0696455	0.0540385	0.184298	0.181713
chr22	16795879	16795978	7546358	0	-	0.444444	(0.44,0.476]	chr22	771315	111	INTRON	INTRON	XKR3	ENSG00000172967.8	ENST00000331428.5:ENST00000684488.1	protein_coding	protein_coding	protein_coding	protein_coding	22	129	2	1.11004	1.3012199999999998	1.4924	0.0470436	0.0196289	0.168418	0.109561
chr2	144512827	144512923	1241738	0	-	0.510417	(0.476,0.515]	chr2	131750	16	UTR3	UTR3:EXON_MRNA:INTRON	ZEB2	ENSG00000169554.23	ENST00000636471.1:ENST00000627532.3:ENST00000638128.1:ENST00000637304.1:ENST00000419938.5:ENST00000409487.7:ENST00000636732.2:ENST00000636026.2:ENST00000675069.1:ENST00000689298.1:ENST00000539609.7:ENST00000558170.6:ENST00000303660.8:ENST00000427902.5:ENST00000637267.2:ENST00000392861.6:ENST00000431672.4:ENST00000409211.5:ENST00000465308.5:ENST00000434448.5:ENST00000472146.5:ENST00000461784.3:ENST00000476394.5:ENST00000637591.2:ENST00000479735.1:ENST00000453352.5:ENST00000435831.5:ENST00000444559.5:ENST00000630572.2:ENST00000484313.3:ENST00000629955.1:ENST00000465070.5:ENST00000636445.1:ENST00000629520.2:ENST00000470879.5:ENST00000625161.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	18	107	2	1.11649	1.301035	1.48558	0.0590085	0.0231631	0.189982	0.118148
chr22	23187910	23188009	7483277	0	+	0.434343	(0.408,0.44]	chr22	763531	53	INTRON	INTRON	BCR	ENSG00000186716.21	ENST00000479188.5:ENST00000359540.7:ENST00000305877.13	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	18	109	2	1.18966	1.3009149999999998	1.41217	0.0509699	0.0272418	0.157186	0.136494
chr17	27302527	27302620	6580618	0	+	0.397849	(0.378,0.408]	chr17	639611	2	EXON_MRNA	EXON_MRNA:INTRON	WSB1	ENSG00000109046.15	ENST00000581440.5:ENST00000578312.5:ENST00000583742.1:ENST00000467843.6:ENST00000579733.5:ENST00000583193.5:ENST00000262394.7:ENST00000427287.6:ENST00000581185.5:ENST00000581089.1:ENST00000348811.6:ENST00000582208.1:ENST00000584114.1:ENST00000487603.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	29	175	2	1.23875	1.300805	1.36286	0.0444179	0.0116328	0.149888	0.0962115
chr6	31836940	31837039	2843856	0	+	0.383838	(0.378,0.408]	chr6	267915	2	EXON_LNCRNA	EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SNHG32	ENSG00000204387.14	ENST00000375640.7:ENST00000375641.6:ENST00000375635.6:ENST00000375638.7:ENST00000648677.1:ENST00000375642.6:ENST00000614363.4:ENST00000395789.5:ENST00000375633.5:ENST00000395788.3	lncRNA	lncRNA	lncRNA	lncRNA	27	171	2	1.12512	1.3007149999999998	1.47631	0.0420818	0.0141094	0.161744	0.0959618
chr17	29256638	29256738	6747419	0	-	0.3	(0.28,0.32]	chr17	663218	9	UTR3	UTR3:EXON_MRNA	NUFIP2	ENSG00000108256.9	ENST00000225388.9	protein_coding	protein_coding	protein_coding	protein_coding	16	124	2	1.19237	1.30017	1.40797	0.0705062	0.0308822	0.184528	0.143385
chr9	128231585	128231685	4203345	0	+	0.42	(0.408,0.44]	chr9	384065	2	SS3_PROX	SS3_PROX:INTRON	DNM1	ENSG00000106976.21	ENST00000372923.8:ENST00000341179.11:ENST00000475805.5:ENST00000393594.7:ENST00000628346.2:ENST00000486160.3:ENST00000627543.2:ENST00000627061.2:ENST00000634267.2:ENST00000637999.1:ENST00000441149.6:ENST00000482638.6:ENST00000637317.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	23	140	2	1.27331	1.2999999999999998	1.32669	0.0307161	0.0264997	0.143385	0.122683
chr4	78843427	78843527	1982060	0	+	0.28	[0,0.28]	chr4	198485	5	INTRON	INTRON	BMP2K	ENSG00000138756.19	ENST00000389010.7:ENST00000502613.3:ENST00000502871.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	106	2	1.24293	1.298555	1.35418	0.0757936	0.0642521	0.19963	0.194427
chr8	23567102	23567198	3715482	0	+	0.302083	(0.28,0.32]	chr8	345233	4	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	SLC25A37	ENSG00000147454.14	ENST00000519973.6:ENST00000290075.10:ENST00000417331.6:ENST00000518881.5:ENST00000520654.1:ENST00000523930.1:ENST00000523883.5:ENST00000522164.5:ENST00000521637.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	132	984	2	1.20734	1.298545	1.38975	0.0125095	0.0104478	0.0977102	0.0855102
chr14	21239058	21239158	5834862	0	-	0.46	(0.44,0.476]	chr14	554459	22	INTRON	INTRON	HNRNPC	ENSG00000092199.19	ENST00000336053.10:ENST00000553300.6:ENST00000554969.5:ENST00000556142.5:ENST00000554455.5:ENST00000430246.6:ENST00000553753.5:ENST00000555309.5:ENST00000555914.5:ENST00000557442.5:ENST00000556628.5:ENST00000556513.5:ENST00000555883.5:ENST00000557201.5:ENST00000556897.5:ENST00000420743.6:ENST00000554539.5:ENST00000554383.5:ENST00000555215.5:ENST00000555137.5:ENST00000554891.5:ENST00000556226.5:ENST00000555176.5:ENST00000553614.5:ENST00000557336.1:ENST00000557768.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	16	95	2	1.20235	1.297945	1.39354	0.068424	0.0249666	0.184298	0.132614
chr16	85673430	85673529	6416597	0	+	0.353535	(0.35,0.378]	chr16	615569	10	UTR3	UTR3:EXON_MRNA	GSE1	ENSG00000131149.19	ENST00000253458.12:ENST00000393243.5:ENST00000412692.5:ENST00000469381.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	24	158	2	1.13441	1.297895	1.46138	0.0445231	0.0190448	0.162997	0.108861
chr22	21855525	21855625	7561265	0	-	0.27	[0,0.28]	chr22	773388	473	INTRON	INTRON	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	17	151	2	1.22054	1.297615	1.37469	0.0712307	0.0330734	0.185599	0.145632
chr4	82897488	82897579	2180176	0	-	0.340659	(0.32,0.35]	chr4	214419	1	SS5_PROX	SS5_PROX:INTRON	SEC31A:THAP9-AS1	ENSG00000138674.17:ENSG00000251022.6	ENST00000355196.6:ENST00000503210.5:ENST00000507676.5:ENST00000506495.5:ENST00000507051.1:ENST00000504520.6:ENST00000504792.6:ENST00000512932.5:ENST00000511271.5:ENST00000508772.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	16	113	2	1.11783	1.297555	1.47728	0.0752351	0.0274903	0.193891	0.136819
chr16	23858543	23858643	6323984	0	+	0.37	(0.35,0.378]	chr16	605693	208	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000498058.1:ENST00000645517.1:ENST00000498739.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	34	211	2	1.03953	1.2971650000000001	1.5548	0.0415161	0.0119453	0.161736	0.0899583
chr3	6562618	6562717	1356868	0	+	0.313131	(0.28,0.32]	chr3	142512	39	INTRON	INTRON	ENSG00000189229	ENSG00000189229.12	ENST00000433639.1:ENST00000655754.1:ENST00000653839.1:ENST00000662846.1:ENST00000414438.2:ENST00000658468.1:ENST00000669512.1:ENST00000667028.1:ENST00000655541.1:ENST00000668643.1:ENST00000671568.1:ENST00000671036.1:ENST00000669798.1:ENST00000655753.1:ENST00000655856.1:ENST00000658398.1:ENST00000661518.1:ENST00000661279.1:ENST00000655495.1:ENST00000663041.1:ENST00000659827.1:ENST00000667716.1:ENST00000662508.1:ENST00000668416.1:ENST00000658133.1:ENST00000342990.4:ENST00000660054.1:ENST00000671370.1	lncRNA	lncRNA	lncRNA	lncRNA	20	154	2	1.1705	1.297115	1.42373	0.0627741	0.0223115	0.176165	0.12446
chr11	27495105	27495204	4937430	0	-	0.333333	(0.32,0.35]	chr11	462408	8	UTR3	UTR3:EXON_MRNA	LIN7C	ENSG00000148943.12	ENST00000278193.7:ENST00000524596.1	protein_coding	protein_coding	protein_coding	protein_coding	14	98	2	1.23259	1.2968950000000001	1.3612	0.0548037	0.0530143	0.179488	0.165463
chr12	111582364	111582463	5413063	0	-	0.50505	(0.476,0.515]	chr12	516941	176	INTRON	INTRON	ATXN2	ENSG00000204842.18	ENST00000642389.2:ENST00000608853.5:ENST00000672613.1:ENST00000673436.1:ENST00000643669.2:ENST00000616825.4:ENST00000389153.10:ENST00000550104.5:ENST00000483311.6:ENST00000672335.1:ENST00000673557.1:ENST00000673283.1:ENST00000673449.1:ENST00000535949.5:ENST00000542287.6:ENST00000644883.1:ENST00000647305.1:ENST00000671792.1:ENST00000392645.6:ENST00000672105.1:ENST00000549455.1:ENST00000548492.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	16	92	2	1.11649	1.295915	1.47534	0.0590085	0.0350582	0.189982	0.137535
chr3	177163278	177163377	1872105	0	-	0.50505	(0.476,0.515]	chr3	187428	19	INTRON	INTRON	TBL1XR1	ENSG00000177565.18	ENST00000457928.7:ENST00000430069.5:ENST00000673974.1:ENST00000352800.10:ENST00000422442.6:ENST00000428970.5:ENST00000424913.5:ENST00000437738.5:ENST00000431421.5:ENST00000635794.1:ENST00000630796.2:ENST00000450267.5:ENST00000630833.2:ENST00000431674.5:ENST00000422066.5:ENST00000443315.5:ENST00000627825.2:ENST00000427349.5:ENST00000413084.5:ENST00000637137.1:ENST00000491623.2:ENST00000637544.1:ENST00000636187.1:ENST00000636912.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	18	104	2	1.20683	1.29493	1.38303	0.0393865	0.0390231	0.161534	0.143072
chr9	131184173	131184272	4216231	0	+	0.464646	(0.44,0.476]	chr9	386630	54	INTRON	INTRON	NUP214	ENSG00000126883.19	ENST00000695497.1:ENST00000695498.1:ENST00000695496.1:ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000525980.5:ENST00000526346.5:ENST00000531929.5:ENST00000651334.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	24	140	2	1.18428	1.294845	1.40541	0.0333376	0.0238723	0.146596	0.119183
chr9	120761763	120761863	4335141	0	-	0.44	(0.408,0.44]	chr9	398218	49	UTR3	UTR3:EXON_MRNA:INTRON	FBXW2	ENSG00000119402.18	ENST00000493559.1:ENST00000684405.1:ENST00000684001.1:ENST00000684047.1:ENST00000608872.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	14	84	2	1.09123	1.29456	1.49789	0.0756213	0.0390091	0.194427	0.161009
chr22	21785260	21785360	7560556	0	-	0.44	(0.408,0.44]	chr22	773360	119	INTRON	INTRON	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	17	94	2	1.04751	1.2945099999999998	1.54151	0.0625418	0.0368312	0.195618	0.138959
chr11	3364278	3364377	4893698	0	-	0.30303	(0.28,0.32]	chr11	458671	18	EXON_MRNA	EXON_MRNA:INTRON	ZNF195	ENSG00000005801.18	ENST00000528796.5:ENST00000399602.9:ENST00000354599.10:ENST00000343338.11:ENST00000620374.4:ENST00000649622.1:ENST00000429541.6:ENST00000005082.13:ENST00000526601.5:ENST00000438262.6:ENST00000528410.5:ENST00000528218.5:ENST00000529789.5:ENST00000525313.6:ENST00000533036.5:ENST00000529228.5:ENST00000529678.5:ENST00000528636.1:ENST00000427810.6:ENST00000534569.5:ENST00000524857.5:ENST00000530643.5:ENST00000618467.4:ENST00000330692.11	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	18	138	2	1.07067	1.29444	1.51821	0.0779837	0.0249506	0.196784	0.132531
chr18	9919014	9919113	6873391	0	+	0.50505	(0.476,0.515]	chr18	680866	28	INTRON	INTRON	VAPA	ENSG00000101558.14	ENST00000400000.7:ENST00000577901.5:ENST00000340541.4:ENST00000585042.5:ENST00000578314.1:ENST00000584796.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	32	185	2	1.28428	1.2943250000000002	1.30437	0.0278543	0.0149551	0.124128	0.10759
chr11	86062060	86062160	5014773	0	-	0.48	(0.476,0.515]	chr11	473022	301	INTRON	INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000630913.2:ENST00000528398.5:ENST00000356360.9:ENST00000534412.5:ENST00000531558.1:ENST00000531930.5:ENST00000532041.5:ENST00000525162.5:ENST00000528256.1:ENST00000528411.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	25	138	2	1.05492	1.293625	1.53233	0.0458005	0.0194937	0.16483	0.109483
chr16	29515784	29515884	6470723	0	-	0.34	(0.32,0.35]	chr16	625147	99	INTRON	INTRON	ENSG00000288632	ENSG00000288632.1	ENST00000675579.1	lncRNA	lncRNA	lncRNA	lncRNA	16	109	2	1.1183	1.2934450000000002	1.46859	0.061246	0.0399069	0.193423	0.14308
chr1	35186406	35186500	420530	0	-	0.425532	(0.408,0.44]	chr1	50656	15	INTRON	INTRON	SFPQ	ENSG00000116560.12	ENST00000470472.5:ENST00000460428.5:ENST00000696553.1:ENST00000357214.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	30	172	2	1.02166	1.293425	1.56519	0.047317	0.0114991	0.169208	0.0889104
chr6	85621981	85622081	3151235	0	-	0.37	(0.35,0.378]	chr6	293878	1	SS5_PROX	SS5_PROX:INTRON	ENSG00000271793:SYNCRIP	ENSG00000271793.2:ENSG00000135316.19	ENST00000682083.1:ENST00000683074.1:ENST00000681965.1:ENST00000682504.1:ENST00000682106.1:ENST00000683364.1:ENST00000683436.1:ENST00000684220.1:ENST00000683909.1:ENST00000684462.1:ENST00000616122.5:ENST00000678528.1:ENST00000676637.1:ENST00000677771.1:ENST00000355238.11:ENST00000678878.1:ENST00000677481.1:ENST00000677646.1:ENST00000676630.1:ENST00000678618.1:ENST00000676542.1:ENST00000677059.1:ENST00000444272.2:ENST00000678899.1:ENST00000369622.8:ENST00000678355.1:ENST00000676688.1:ENST00000677514.1:ENST00000678816.1:ENST00000678930.1:ENST00000678589.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	23	146	2	1.15413	1.29331	1.43249	0.0387582	0.026579	0.160186	0.123035
chr19	11146869	11146957	7136880	0	-	0.5	(0.476,0.515]	chr19	719785	6	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	SPC24	ENSG00000161888.12	ENST00000585567.5:ENST00000592540.6:ENST00000591396.5:ENST00000592967.5	protein_coding	protein_coding	protein_coding	protein_coding	27	166	2	1.26354	1.292785	1.32203	0.0401772	0.0175542	0.161534	0.105143
chr7	111385670	111385770	3622339	0	-	0.39	(0.378,0.408]	chr7	337093	4218	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	74	2	1.21	1.2926199999999999	1.37524	0.0633399	0.0610755	0.197726	0.172411
chr22	16610362	16610461	7473444	0	+	0.333333	(0.32,0.35]	chr22	761972	78	INTRON	INTRON	TPTEP1:ENSG00000283633	ENSG00000100181.22:ENSG00000283633.1	ENST00000558085.6:ENST00000400593.6:ENST00000592918.5:ENST00000592107.5:ENST00000426585.5:ENST00000591299.1	lncRNA	lncRNA	lncRNA:transcribed_unprocessed_pseudogene	lncRNA:processed_transcript	22	149	2	1.25813	1.292575	1.32702	0.0450154	0.0272906	0.149888	0.136494
chr7	140466808	140466907	3661500	0	-	0.373737	(0.35,0.378]	chr7	339916	62	INTRON	INTRON	MKRN1	ENSG00000133606.11	ENST00000255977.7:ENST00000475010.5:ENST00000495305.5:ENST00000474576.5:ENST00000480552.5:ENST00000496169.5:ENST00000443720.6:ENST00000471104.5:ENST00000467513.5:ENST00000494939.1:ENST00000498535.1:ENST00000473444.1:ENST00000475180.5:ENST00000481705.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	17	111	2	1.27441	1.29241	1.31041	0.0507239	0.034956	0.156453	0.149246
chr8	29055530	29055628	3726528	0	+	0.469388	(0.44,0.476]	chr8	346337	19	INTRON	INTRON	HMBOX1	ENSG00000147421.18	ENST00000522468.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	22	128	2	1.26755	1.292065	1.31658	0.0368761	0.0260519	0.139103	0.133676
chr9	98847777	98847873	4174062	0	+	0.416667	(0.408,0.44]	chr9	380403	13	INTRON	INTRON	GALNT12	ENSG00000119514.7	ENST00000375011.4	protein_coding	protein_coding	protein_coding	protein_coding	13	78	2	1.21994	1.2912	1.36246	0.076179	0.0386802	0.195346	0.159946
chr1	51776832	51776918	101020	0	+	0.372093	(0.35,0.378]	chr1	13366	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	OSBPL9	ENSG00000117859.19	ENST00000371714.5:ENST00000428468.6:ENST00000447887.5:ENST00000495776.5:ENST00000435274.6:ENST00000453295.5:ENST00000489990.5:ENST00000531828.5:ENST00000361556.9:ENST00000462759.5:ENST00000486942.5:ENST00000528603.5:ENST00000475697.5:ENST00000531061.1:ENST00000531819.5:ENST00000533825.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	13	85	2	1.22527	1.290615	1.35596	0.0773701	0.0404607	0.196285	0.161534
chr19	34401026	34401125	7052867	0	+	0.373737	(0.35,0.378]	chr19	703434	11	UTR3	UTR3:EXON_MRNA	GPI	ENSG00000105220.17	ENST00000415930.8:ENST00000356487.11	protein_coding	protein_coding	protein_coding	protein_coding	53	331	2	0.957476	1.290133	1.62279	0.0528871	0.00401146	0.161782	0.0577895
chr5	43494793	43494886	2614933	0	-	0.258065	[0,0.28]	chr5	248610	2	SS3_PROX	SS3_PROX:INTRON	C5orf34	ENSG00000172244.9	ENST00000306862.7:ENST00000503655.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	26	232	2	1.23425	1.29006	1.34587	0.0458265	0.0272763	0.149888	0.136494
chr1	29171214	29171313	410337	0	-	0.434343	(0.408,0.44]	chr1	49420	27	EXON_MRNA	EXON_MRNA:INTRON	SRSF4	ENSG00000116350.18	ENST00000373795.7:ENST00000691479.1:ENST00000634348.1:ENST00000466448.4:ENST00000605204.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	16	95	2	1.27107	1.290025	1.30898	0.056267	0.0340981	0.166399	0.146815
chr1	203811807	203811907	296842	0	+	0.44	(0.408,0.44]	chr1	34134	84	INTRON	INTRON	ZC3H11A:ZBED6	ENSG00000058673.17:ENSG00000257315.3	ENST00000367210.3:ENST00000453771.5:ENST00000432282.5:ENST00000638800.1:ENST00000367214.5:ENST00000639812.1:ENST00000367212.7:ENST00000332127.8:ENST00000550078.2:ENST00000495527.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	15	87	2	1.27662	1.289825	1.30303	0.0787183	0.0307142	0.198567	0.143385
chr3	177179896	177179996	1872273	0	-	0.44	(0.408,0.44]	chr3	187438	86	INTRON	INTRON	TBL1XR1	ENSG00000177565.18	ENST00000457928.7:ENST00000430069.5:ENST00000673974.1:ENST00000352800.10:ENST00000422442.6:ENST00000428970.5:ENST00000424913.5:ENST00000437738.5:ENST00000431421.5:ENST00000635794.1:ENST00000630796.2:ENST00000450267.5:ENST00000630833.2:ENST00000431674.5:ENST00000422066.5:ENST00000443315.5:ENST00000627825.2:ENST00000427349.5:ENST00000413084.5:ENST00000637137.1:ENST00000491623.2:ENST00000637544.1:ENST00000636187.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	17	100	2	1.27107	1.2870499999999998	1.30303	0.056267	0.0307142	0.166399	0.143385
chr1	28507088	28507180	57178	0	+	0.413043	(0.408,0.44]	chr1	7378	9	EXON_MRNA	EXON_MRNA:INTRON	RCC1:SNHG3	ENSG00000180198.17:ENSG00000242125.3	ENST00000398958.6:ENST00000649185.1:ENST00000413987.1:ENST00000427469.5:ENST00000683442.1:ENST00000447507.1:ENST00000434290.6:ENST00000373833.10:ENST00000437681.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	57	350	2	1.23475	1.2864200000000001	1.33809	0.0168684	0.0103767	0.1108	0.0852354
chr1	75786599	75786698	144617	0	+	0.343434	(0.32,0.35]	chr1	16317	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ACADM:RABGGTB	ENSG00000117054.15:ENSG00000137955.16	ENST00000528016.1:ENST00000496055.5:ENST00000485459.5:ENST00000473406.5:ENST00000370826.3:ENST00000497648.1:ENST00000319942.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	15	108	2	1.22414	1.286305	1.34847	0.0625148	0.0421043	0.195535	0.148082
chr13	110901987	110902086	5650515	0	-	0.333333	(0.32,0.35]	chr13	538370	9	INTRON	INTRON	ANKRD10	ENSG00000088448.14	ENST00000267339.6:ENST00000489973.6:ENST00000310847.8:ENST00000465753.1:ENST00000494859.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	62	430	2	0.918528	1.2848890000000002	1.65125	0.0679375	0.00191766	0.184298	0.0405185
chr8	102863999	102864096	4013239	0	-	0.556701	(0.515,0.57]	chr8	367349	3	UTR5	UTR5:EXON_MRNA:INTRON	AZIN1	ENSG00000155096.15	ENST00000681985.1:ENST00000684566.1:ENST00000682725.1:ENST00000337198.10:ENST00000684459.1:ENST00000683787.1:ENST00000682014.1:ENST00000682969.1:ENST00000684721.1:ENST00000683965.1:ENST00000347770.8:ENST00000520402.5:ENST00000518353.5:ENST00000517581.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	17	84	2	1.20268	1.284755	1.36683	0.0425051	0.0386314	0.161903	0.142701
chr5	179622076	179622176	2779767	0	-	0.38	(0.378,0.408]	chr5	262332	1	SS3_PROX	SS3_PROX:INTRON	HNRNPH1	ENSG00000169045.17	ENST00000329433.11:ENST00000393432.9:ENST00000356731.9:ENST00000442819.6:ENST00000514332.5:ENST00000510411.5:ENST00000510678.5:ENST00000514731.5:ENST00000503105.5:ENST00000504779.6:ENST00000508103.5:ENST00000506721.5:ENST00000523137.5:ENST00000505811.5:ENST00000510431.5:ENST00000519056.5:ENST00000504348.5:ENST00000513225.5:ENST00000524180.5:ENST00000513972.5:ENST00000519707.5:ENST00000519455.5:ENST00000515158.5:ENST00000521116.5:ENST00000505087.1:ENST00000515714.5:ENST00000512273.5:ENST00000503664.1:ENST00000630639.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	55	329	2	1.2112	1.284675	1.35815	0.0261289	0.00686296	0.122221	0.0749442
chr12	54234016	54234115	5330428	0	-	0.555556	(0.515,0.57]	chr12	508602	32	UTR3	UTR3:EXON_MRNA	CBX5	ENSG00000094916.16	ENST00000209875.9	protein_coding	protein_coding	protein_coding	protein_coding	25	125	2	1.21168	1.284005	1.35633	0.0306715	0.0205505	0.143385	0.110999
chr11	86003864	86003951	5014177	0	-	0.310345	(0.28,0.32]	chr11	472969	2	SS3_PROX	SS3_PROX:INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000630913.2:ENST00000528398.5:ENST00000356360.9:ENST00000534412.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	21	142	2	1.05939	1.2837399999999999	1.50809	0.0529652	0.0465667	0.179331	0.151518
chr12	93401172	93401271	5189179	0	+	0.323232	(0.32,0.35]	chr12	490816	19	UTR3	UTR3:EXON_MRNA	NUDT4	ENSG00000173598.14	ENST00000337179.9:ENST00000415493.7:ENST00000549992.5	protein_coding	protein_coding	protein_coding	protein_coding	20	131	2	1.20547	1.2833350000000001	1.3612	0.0548037	0.0333118	0.165463	0.146487
chr5	146482193	146482292	2515867	0	+	0.242424	[0,0.28]	chr5	240359	11	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	TCERG1	ENSG00000113649.13	ENST00000296702.9:ENST00000679501.2:ENST00000394421.7:ENST00000549332.1:ENST00000515203.5:ENST00000506524.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	22	195	2	1.11782	1.283075	1.44833	0.0586606	0.0303654	0.189946	0.130355
chrX	71300863	71300957	7678192	0	+	0.425532	(0.408,0.44]	chrX	786120	9	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	NONO	ENSG00000147140.17	ENST00000677446.1:ENST00000677274.1:ENST00000535149.5:ENST00000420903.6:ENST00000678335.1:ENST00000678830.1:ENST00000677826.1:ENST00000473525.2:ENST00000678437.1:ENST00000676499.1:ENST00000676495.1:ENST00000678323.1:ENST00000677766.1:ENST00000679267.1:ENST00000677879.1:ENST00000677245.1:ENST00000373841.5:ENST00000276079.13:ENST00000679029.1:ENST00000677218.1:ENST00000676797.1:ENST00000678660.1:ENST00000677014.1:ENST00000678231.1:ENST00000677612.1:ENST00000677977.1:ENST00000490044.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	36	209	2	1.27405	1.283035	1.29202	0.0242682	0.0153775	0.12011	0.108569
chr6	15316525	15316625	2823652	0	+	0.48	(0.476,0.515]	chr6	265192	16	INTRON	INTRON	JARID2	ENSG00000008083.14	ENST00000341776.7:ENST00000397311.4	protein_coding	protein_coding	protein_coding	protein_coding	11	65	2	1.27903	1.2827899999999999	1.28655	0.075974	0.0608608	0.194842	0.19287
chr22	20950722	20950820	7480852	0	+	0.408163	(0.378,0.408]	chr22	763101	10	UTR3	UTR3:EXON_MRNA:INTRON	CRKL	ENSG00000099942.13	ENST00000354336.8:ENST00000411769.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	71	415	2	1.04505	1.2823250000000002	1.5196	0.0256127	0.00582564	0.133676	0.0666643
chr8	129565927	129566027	4060946	0	-	0.42	(0.408,0.44]	chr8	369672	88	INTRON	INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1:ENST00000676273.1:ENST00000667643.1:ENST00000668791.1:ENST00000663716.1:ENST00000663572.1:ENST00000676148.1:ENST00000667962.1:ENST00000674877.1:ENST00000675316.1:ENST00000674656.1:ENST00000446592.7:ENST00000667341.1:ENST00000675186.1:ENST00000652971.1:ENST00000661447.1:ENST00000674863.1:ENST00000675498.1:ENST00000675527.1:ENST00000676108.1:ENST00000657647.1:ENST00000675589.1:ENST00000675913.1:ENST00000675109.1:ENST00000671632.1:ENST00000671311.1:ENST00000676099.1:ENST00000660652.1:ENST00000675522.1:ENST00000675044.1:ENST00000675435.1:ENST00000674639.1:ENST00000676069.1:ENST00000675532.1:ENST00000674762.1:ENST00000523151.6:ENST00000675948.1:ENST00000665364.1:ENST00000657251.1:ENST00000675166.1:ENST00000674883.1:ENST00000675867.1:ENST00000674580.1:ENST00000675393.1:ENST00000520048.1:ENST00000674906.1:ENST00000676030.1:ENST00000670588.1:ENST00000675072.1:ENST00000664936.1:ENST00000652914.1:ENST00000657069.1:ENST00000674882.1	lncRNA	lncRNA	lncRNA	lncRNA	12	71	2	1.27662	1.282235	1.28785	0.0787183	0.0494367	0.198567	0.174213
chr22	20574155	20574251	7480039	0	+	0.46875	(0.44,0.476]	chr22	763023	6	EXON_MRNA	EXON_MRNA:INTRON	MED15	ENSG00000099917.17	ENST00000433831.5:ENST00000292733.11:ENST00000263205.11:ENST00000406969.5:ENST00000382974.6:ENST00000492381.5:ENST00000478831.5:ENST00000489651.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	17	100	2	1.19808	1.2817150000000002	1.36535	0.0608628	0.0277582	0.17184	0.137011
chr16	67099372	67099471	6366256	0	+	0.373737	(0.35,0.378]	chr16	611452	7	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	CBFB	ENSG00000067955.15	ENST00000651988.1:ENST00000652360.1:ENST00000290858.11:ENST00000412916.7:ENST00000650873.1:ENST00000563939.3:ENST00000565389.1:ENST00000652116.1:ENST00000568858.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	58	372	2	1.11275	1.281685	1.45062	0.0304063	0.00632536	0.130461	0.0722266
chr19	2271954	2272051	6997099	0	+	0.701031	(0.57,1]	chr19	693662	1	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	OAZ1	ENSG00000104904.12	ENST00000590943.6:ENST00000592787.2:ENST00000602676.6:ENST00000581150.6:ENST00000582888.8:ENST00000593012.1:ENST00000588673.3:ENST00000586054.2:ENST00000589361.2:ENST00000592727.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	31	89	2	1.18718	1.28158	1.37598	0.0193923	0.0184034	0.119831	0.108834
chr6	26204609	26204644	2837430	0	+	0.428571	(0.408,0.44]	chr6	266061	1	UTR5	UTR5:EXON_MRNA	H4C5	ENSG00000276966.3	ENST00000615164.3	protein_coding	protein_coding	protein_coding	protein_coding	48	279	2	1.18893	1.2812999999999999	1.37367	0.0284049	0.00725669	0.126394	0.0757237
chr15	66582548	66582648	6050786	0	+	0.36	(0.35,0.378]	chr15	576220	3	SS5_PROX	SS5_PROX:INTRON	LINC01169	ENSG00000259471.1	ENST00000558797.1	lncRNA	lncRNA	lncRNA	lncRNA	29	192	2	1.23658	1.28104	1.3255	0.0279839	0.0261739	0.133676	0.124659
chr7	140461538	140461637	3661447	0	-	0.50505	(0.476,0.515]	chr7	339916	9	INTRON	INTRON	MKRN1	ENSG00000133606.11	ENST00000255977.7:ENST00000475010.5:ENST00000495305.5:ENST00000474576.5:ENST00000480552.5:ENST00000496169.5:ENST00000443720.6:ENST00000471104.5:ENST00000467513.5:ENST00000494939.1:ENST00000498535.1:ENST00000473444.1:ENST00000475180.5:ENST00000481705.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	17	95	2	1.23233	1.28052	1.32871	0.0678032	0.0327013	0.184298	0.145164
chr8	73323621	73323719	3780526	0	+	0.346939	(0.32,0.35]	chr8	350713	7	UTR3	UTR3:EXON_MRNA	RDH10	ENSG00000121039.10	ENST00000240285.10	protein_coding	protein_coding	protein_coding	protein_coding	15	105	2	1.14289	1.280465	1.41804	0.0771493	0.0337299	0.196285	0.146709
chr16	23881193	23881293	6324212	0	+	0.43	(0.408,0.44]	chr16	605697	120	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000645517.1:ENST00000498739.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	32	184	2	0.925278	1.2803140000000002	1.63535	0.0726727	0.00579231	0.18868	0.0684633
chr9	131166624	131166723	4216052	0	+	0.464646	(0.44,0.476]	chr9	386613	21	INTRON	INTRON	NUP214	ENSG00000126883.19	ENST00000695497.1:ENST00000695498.1:ENST00000695496.1:ENST00000695495.1:ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000525980.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	15	89	2	1.17605	1.28	1.38395	0.060782	0.0392605	0.192641	0.143072
chr3	49987059	49987159	1423430	0	+	0.48	(0.476,0.515]	chr3	149988	50	INTRON	INTRON	RBM6	ENSG00000004534.15	ENST00000442092.5:ENST00000443081.5:ENST00000419610.5:ENST00000441115.5:ENST00000422955.5:ENST00000454079.5:ENST00000266022.9:ENST00000425608.5:ENST00000434592.5:ENST00000464013.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	12	70	2	1.27247	1.2795100000000001	1.28655	0.075974	0.0520408	0.194842	0.176908
chr1	108932185	108932284	518839	0	-	0.474747	(0.44,0.476]	chr1	60853	21	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	CLCC1	ENSG00000121940.17	ENST00000690509.1:ENST00000687328.1:ENST00000685014.1:ENST00000685540.1:ENST00000686576.1:ENST00000688070.1:ENST00000691513.1:ENST00000686821.1:ENST00000692511.1:ENST00000689479.1:ENST00000687646.1:ENST00000687998.1:ENST00000687226.1:ENST00000693336.1:ENST00000689991.1:ENST00000687591.1:ENST00000691777.1:ENST00000690756.1:ENST00000688778.1:ENST00000685104.1:ENST00000689103.1:ENST00000687734.1:ENST00000686434.1:ENST00000685497.1:ENST00000691342.1:ENST00000686776.1:ENST00000692342.1:ENST00000689351.1:ENST00000692584.1:ENST00000692775.1:ENST00000687134.1:ENST00000690707.1:ENST00000687675.1:ENST00000688298.1:ENST00000675018.1:ENST00000690781.1:ENST00000691556.1:ENST00000689189.1:ENST00000687099.1:ENST00000685791.1:ENST00000687865.1:ENST00000687449.1:ENST00000688285.1:ENST00000686817.1:ENST00000369968.7:ENST00000674992.1:ENST00000675001.1:ENST00000369969.7:ENST00000356970.6:ENST00000692184.1:ENST00000482889.2:ENST00000473062.2:ENST00000369976.6:ENST00000688610.1:ENST00000675128.1:ENST00000693089.1:ENST00000675571.1:ENST00000675650.1:ENST00000369970.8:ENST00000674561.2:ENST00000675451.1:ENST00000675654.1:ENST00000675790.1:ENST00000675584.1:ENST00000692795.1:ENST00000691731.1:ENST00000689359.1:ENST00000676392.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	34	195	2	1.0002	1.27828	1.55636	0.0543514	0.0074632	0.164972	0.0772645
chr1	244861803	244861901	673079	0	-	0.469388	(0.44,0.476]	chr1	79634	14	UTR5	UTR5:EXON_MRNA:INTRON	HNRNPU	ENSG00000153187.20	ENST00000649899.1:ENST00000640306.1:ENST00000444376.7:ENST00000640218.2:ENST00000639628.2:ENST00000440865.2:ENST00000638952.1:ENST00000366525.8:ENST00000639880.1:ENST00000283179.14:ENST00000638475.1:ENST00000476241.2:ENST00000640001.1:ENST00000640056.1:ENST00000638301.1:ENST00000639667.1:ENST00000640440.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	19	115	2	1.1509	1.278155	1.40541	0.0583814	0.0238723	0.189306	0.119183
chr19	21764597	21764696	7159276	0	-	0.40404	(0.378,0.408]	chr19	723737	107	INTRON	INTRON	ZNF100	ENSG00000197020.12	ENST00000358296.11:ENST00000598026.1:ENST00000596452.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	15	93	2	1.19639	1.27785	1.35931	0.0626432	0.0393907	0.175915	0.161534
chr16	29511790	29511890	6470683	0	-	0.25	[0,0.28]	chr16	625147	59	INTRON	INTRON	ENSG00000288632	ENSG00000288632.1	ENST00000675579.1	lncRNA	lncRNA	lncRNA	lncRNA	29	249	2	1.25652	1.277655	1.2987899999999999	0.0418107	0.0278689	0.147143	0.137011
chr16	23856649	23856748	6323965	0	+	0.474747	(0.44,0.476]	chr16	605693	189	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000498058.1:ENST00000645517.1:ENST00000498739.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	18	105	2	1.22624	1.277085	1.32793	0.0558598	0.0279938	0.165463	0.137011
chr5	113014275	113014374	2453772	0	+	0.343434	(0.32,0.35]	chr5	235130	9	UTR3	UTR3:EXON_MRNA	DCP2	ENSG00000172795.17	ENST00000515408.5:ENST00000389063.3:ENST00000674880.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	18	114	2	1.05676	1.27704	1.49732	0.0598234	0.0455974	0.190062	0.149888
chr12	53465057	53465155	5143026	0	+	0.510204	(0.476,0.515]	chr12	485422	1	SS5_PROX	SS5_PROX:INTRON	PCBP2	ENSG00000197111.16	ENST00000546463.6:ENST00000437231.5:ENST00000447282.5:ENST00000359282.9:ENST00000549863.5:ENST00000359462.9:ENST00000552296.6:ENST00000552819.5:ENST00000455667.7:ENST00000439930.7:ENST00000548933.5:ENST00000546652.6:ENST00000562264.5:ENST00000550585.5:ENST00000547987.2:ENST00000553064.6:ENST00000547859.2:ENST00000549272.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	39	231	2	0.994083	1.2764315000000002	1.55878	0.0680378	0.003291	0.184298	0.0527031
chr1	154253499	154253599	227868	0	+	0.48	(0.476,0.515]	chr1	26304	2	SS3_PROX	SS3_PROX:INTRON	UBAP2L	ENSG00000143569.19	ENST00000343815.10:ENST00000271877.11:ENST00000613315.4:ENST00000428931.6:ENST00000361546.6	protein_coding	protein_coding	protein_coding	protein_coding	12	71	2	1.27239	1.27571	1.27903	0.0651036	0.0608608	0.19287	0.179712
chr12	22687514	22687612	5095383	0	+	0.387755	(0.378,0.408]	chr12	481289	27	UTR3	UTR3:EXON_MRNA	ETNK1	ENSG00000139163.16	ENST00000266517.9	protein_coding	protein_coding	protein_coding	protein_coding	29	176	2	1.16442	1.27454	1.38466	0.0424147	0.0137819	0.148082	0.10247
chr1	246926047	246926146	681904	0	-	0.424242	(0.408,0.44]	chr1	80043	73	INTRON	INTRON	AHCTF1	ENSG00000153207.16	ENST00000648844.2:ENST00000326225.3:ENST00000366508.5	protein_coding	protein_coding	protein_coding	protein_coding	17	100	2	1.04701	1.2740200000000002	1.50103	0.0790107	0.0237058	0.199169	0.129075
chr19	15299844	15299944	7147079	0	-	0.45	(0.44,0.476]	chr19	721965	195	INTRON	INTRON	BRD4	ENSG00000141867.19	ENST00000679869.1:ENST00000360016.9:ENST00000594841.5:ENST00000597315.5:ENST00000601941.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	14	80	2	1.24673	1.27399	1.30125	0.0734119	0.0424533	0.190171	0.161763
chr1	236799132	236799232	342532	0	+	0.54	(0.515,0.57]	chr1	39810	30	INTRON	INTRON	MTR	ENSG00000116984.15	ENST00000680454.1:ENST00000366577.10:ENST00000674797.2:ENST00000652435.1:ENST00000679569.1:ENST00000650888.1:ENST00000463959.1:ENST00000535889.6:ENST00000651455.1:ENST00000681102.1:ENST00000679842.1:ENST00000681177.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	65	2	1.2325	1.273165	1.31383	0.0576823	0.0552039	0.188193	0.165463
chr4	139389184	139389284	2050593	0	+	0.29	(0.28,0.32]	chr4	203405	12	UTR3	UTR3:EXON_MRNA:INTRON	NAA15	ENSG00000164134.13	ENST00000296543.10:ENST00000398947.1:ENST00000515576.1	protein_coding	protein_coding	protein_coding	protein_coding	31	232	2	1.01366	1.273135	1.53261	0.0687166	0.0104707	0.184298	0.0904918
chr1	39572392	39572466	427751	0	-	0.364865	(0.35,0.378]	chr1	51948	1	CDS	CDS:EXON_MRNA	PABPC4	ENSG00000090621.15	ENST00000677006.1:ENST00000372858.8:ENST00000372856.7:ENST00000372857.7:ENST00000372862.7:ENST00000676523.1:ENST00000677548.1:ENST00000678980.1:ENST00000677244.1:ENST00000677609.1:ENST00000679246.1:ENST00000678287.1:ENST00000678625.1:ENST00000470443.6:ENST00000421687.6:ENST00000677644.1:ENST00000474378.1:ENST00000451091.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	14	87	2	1.13602	1.27265	1.40928	0.0624578	0.0566272	0.19537	0.167395
chr3	186972174	186972273	1586593	0	+	0.414141	(0.408,0.44]	chr3	164332	79	INTRON	INTRON	ST6GAL1	ENSG00000073849.16	ENST00000676786.1:ENST00000169298.8:ENST00000457772.6:ENST00000455441.5:ENST00000427315.5:ENST00000677292.1:ENST00000458216.5:ENST00000430309.5:ENST00000417392.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	15	89	2	1.21368	1.271985	1.33029	0.0539423	0.0469419	0.181435	0.151917
chr19	28517620	28517720	7166271	0	-	0.56	(0.515,0.57]	chr19	724189	494	INTRON	INTRON	ENSG00000283403:ENSG00000267243	ENSG00000283403.1:ENSG00000267243.6	ENST00000592347.5:ENST00000593065.5	lncRNA	lncRNA	lncRNA	lncRNA	22	109	2	1.2307	1.27158	1.31246	0.0366631	0.0250954	0.138959	0.133259
chr6	4063792	4063891	2790140	0	+	0.333333	(0.32,0.35]	chr6	263563	33	UTR3	UTR3:EXON_MRNA:INTRON	PRPF4B	ENSG00000112739.17	ENST00000480058.5:ENST00000337659.11:ENST00000481109.5:ENST00000463634.6:ENST00000461612.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	15	102	2	1.26579	1.27043	1.27507	0.0696455	0.0419833	0.184298	0.161744
chr22	38483936	38484036	7587854	0	-	0.48	(0.476,0.515]	chr22	776711	6	UTR3	UTR3:EXON_MRNA	DDX17	ENSG00000100201.23	ENST00000403230.3:ENST00000396821.8	protein_coding	protein_coding	protein_coding	protein_coding	27	155	2	1.01207	1.269755	1.52744	0.0641877	0.00965695	0.178258	0.0871511
chr20	49287753	49287852	7284699	0	+	0.434343	(0.408,0.44]	chr20	741065	56	INTRON	INTRON	ZFAS1	ENSG00000177410.13	ENST00000371743.8:ENST00000417721.5:ENST00000441722.5:ENST00000450535.5:ENST00000458653.5:ENST00000428008.6:ENST00000620594.2:ENST00000652916.1:ENST00000326677.9:ENST00000659056.1	lncRNA	lncRNA	lncRNA	lncRNA	14	84	2	1.20916	1.269725	1.33029	0.0631681	0.0469419	0.197212	0.151917
chr5	179614461	179614555	2779669	0	-	0.319149	(0.28,0.32]	chr5	262288	4	UTR3	UTR3:EXON_MRNA	HNRNPH1	ENSG00000169045.17	ENST00000329433.11:ENST00000393432.9:ENST00000356731.9:ENST00000442819.6:ENST00000502904.5:ENST00000514332.5:ENST00000515481.5:ENST00000510411.5:ENST00000510678.5:ENST00000523449.5:ENST00000524179.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	63	472	2	0.972426	1.269463	1.5665	0.0615714	0.00348426	0.173789	0.0541674
chr16	31121583	31121676	6340442	0	+	0.462366	(0.44,0.476]	chr16	608276	6	INTRON	INTRON	KAT8	ENSG00000103510.20	ENST00000543774.6:ENST00000219797.9:ENST00000448516.6	protein_coding	protein_coding	protein_coding	protein_coding	20	116	2	1.06715	1.26906	1.4709700000000001	0.0639951	0.021866	0.177882	0.123836
chr17	47216312	47216412	6621421	0	+	0.39	(0.378,0.408]	chr17	645806	20	INTRON	INTRON	MYL4	ENSG00000198336.9	ENST00000571981.5:ENST00000572316.5:ENST00000354968.5:ENST00000570772.5:ENST00000536623.6:ENST00000576874.5:ENST00000573747.6:ENST00000393450.5:ENST00000572303.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	18	104	2	1.11158	1.26856	1.42554	0.0508331	0.0425654	0.176064	0.148082
chr22	20951015	20951113	7480855	0	+	0.44898	(0.44,0.476]	chr22	763101	13	UTR3	UTR3:EXON_MRNA:INTRON	CRKL	ENSG00000099942.13	ENST00000354336.8:ENST00000411769.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	53	301	2	1.24519	1.2684	1.29161	0.0171107	0.0125334	0.104099	0.0978922
chr12	50446409	50446509	5136801	0	+	0.34	(0.32,0.35]	chr12	484418	44	INTRON	INTRON	LARP4	ENSG00000161813.23	ENST00000293618.12:ENST00000429001.7:ENST00000398473.7:ENST00000522085.5:ENST00000518444.5:ENST00000518561.5:ENST00000347328.9:ENST00000520064.2:ENST00000521120.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	12	84	2	1.24518	1.26837	1.29156	0.0754551	0.060443	0.194427	0.191687
chr6	26125049	26125149	2837002	0	+	0.38	(0.378,0.408]	chr6	266009	3	SS5_PROX	SS5_PROX:INTRON	H2AC6	ENSG00000180573.10	ENST00000314088.6:ENST00000602637.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	22	133	2	1.15225	1.2682449999999998	1.38424	0.0585648	0.0181249	0.167915	0.114853
chr1	12617348	12617443	379539	0	-	0.568421	(0.515,0.57]	chr1	44555	1	UTR5	UTR5:EXON_MRNA	DHRS3	ENSG00000162496.9	ENST00000616661.5	protein_coding	protein_coding	protein_coding	protein_coding	44	215	2	1.24519	1.26795	1.29071	0.018163	0.0116726	0.107578	0.0962115
chr19	34400828	34400927	7052865	0	+	0.474747	(0.44,0.476]	chr19	703434	9	UTR3	UTR3:EXON_MRNA	GPI	ENSG00000105220.17	ENST00000415930.8:ENST00000356487.11	protein_coding	protein_coding	protein_coding	protein_coding	23	140	2	1.24699	1.267865	1.28874	0.0484245	0.0242149	0.172383	0.12011
chr6	87225933	87226033	2913969	0	+	0.38	(0.378,0.408]	chr6	275311	21	INTRON	INTRON	ZNF292	ENSG00000188994.13	ENST00000369577.8:ENST00000518845.1:ENST00000339907.8:ENST00000496806.2	protein_coding	protein_coding	protein_coding	protein_coding	15	93	2	1.24911	1.2678449999999999	1.28658	0.0534282	0.0499541	0.17488	0.162935
chr16	22507699	22507799	6322686	0	+	0.47	(0.44,0.476]	chr16	605451	3	SS5_PROX	SS5_PROX:INTRON	NPIPB5	ENSG00000243716.11	ENST00000415654.5:ENST00000415833.6:ENST00000546168.5:ENST00000543407.5:ENST00000356156.7:ENST00000541154.5:ENST00000545375.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	27	155	2	1.01228	1.26784	1.5234	0.0619911	0.0110848	0.174608	0.0931066
chr3	43706260	43706359	1410333	0	+	0.40404	(0.378,0.408]	chr3	147937	33	INTRON	INTRON	ABHD5	ENSG00000011198.10	ENST00000643520.1:ENST00000458276.7:ENST00000649763.1:ENST00000643140.1:ENST00000643500.1:ENST00000644371.2:ENST00000013894.3:ENST00000646378.1:ENST00000643477.1:ENST00000646799.1:ENST00000454293.2:ENST00000642351.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	22	130	2	1.24911	1.2677049999999999	1.2863	0.0534282	0.0226043	0.162935	0.124921
chr7	127371025	127371124	3634024	0	-	0.262626	[0,0.28]	chr7	337750	11	UTR3	UTR3:EXON_MRNA:INTRON	ZNF800	ENSG00000048405.11	ENST00000485577.1:ENST00000265827.8:ENST00000393313.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	15	131	2	1.2601	1.2670949999999999	1.27409	0.0688613	0.0537324	0.184298	0.180803
chr16	31191438	31191521	6340688	0	+	0.46988	(0.44,0.476]	chr16	608368	1	UTR3	UTR3:EXON_MRNA	FUS	ENSG00000089280.19	ENST00000566605.5:ENST00000254108.12:ENST00000380244.7:ENST00000487509.6:ENST00000568685.1:ENST00000569760.5:ENST00000483853.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	35	202	2	1.03	1.267045	1.50409	0.0539961	0.00661512	0.164413	0.0738715
chr1	160219651	160219748	571164	0	-	0.494845	(0.476,0.515]	chr1	69110	8	EXON_MRNA	EXON_MRNA:INTRON	DCAF8	ENSG00000132716.19	ENST00000326837.6:ENST00000368073.7:ENST00000368074.6:ENST00000477163.1:ENST00000461888.5:ENST00000490368.5:ENST00000497354.1:ENST00000481831.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	18	96	2	1.0478	1.2669000000000001	1.486	0.0585622	0.0430512	0.189633	0.148082
chr1	108961204	108961300	519157	0	-	0.34375	(0.32,0.35]	chr1	60934	17	INTRON	INTRON	CLCC1	ENSG00000121940.17	ENST00000690509.1:ENST00000687328.1:ENST00000685014.1:ENST00000685540.1:ENST00000686576.1:ENST00000688070.1:ENST00000691513.1:ENST00000686821.1:ENST00000692511.1:ENST00000689479.1:ENST00000687646.1:ENST00000687998.1:ENST00000687226.1:ENST00000693336.1:ENST00000689991.1:ENST00000687591.1:ENST00000691777.1:ENST00000690756.1:ENST00000688778.1:ENST00000685104.1:ENST00000689103.1:ENST00000687734.1:ENST00000686434.1:ENST00000685497.1:ENST00000691342.1:ENST00000686776.1:ENST00000692342.1:ENST00000689351.1:ENST00000692584.1:ENST00000692775.1:ENST00000687134.1:ENST00000675018.1:ENST00000690781.1:ENST00000691556.1:ENST00000689189.1:ENST00000687099.1:ENST00000685791.1:ENST00000687865.1:ENST00000687449.1:ENST00000688285.1:ENST00000369968.7:ENST00000674992.1:ENST00000675001.1:ENST00000369969.7:ENST00000356970.6:ENST00000688610.1:ENST00000675128.1:ENST00000693089.1:ENST00000675571.1:ENST00000675650.1:ENST00000369970.8:ENST00000674561.2:ENST00000675654.1:ENST00000675790.1:ENST00000675584.1:ENST00000692795.1:ENST00000691731.1:ENST00000689359.1:ENST00000676392.2:ENST00000676391.2:ENST00000676454.1:ENST00000674849.1:ENST00000675956.1:ENST00000302500.5:ENST00000675508.1:ENST00000688168.1:ENST00000693673.1:ENST00000692404.1:ENST00000686078.1:ENST00000690874.1:ENST00000692732.1:ENST00000685628.1:ENST00000676306.1:ENST00000676059.2:ENST00000674527.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	24	164	2	1.24023	1.26619	1.29215	0.0440036	0.0258067	0.149626	0.133676
chr10	27146652	27146748	4586212	0	-	0.4375	(0.408,0.44]	chr10	422770	12	UTR3	UTR3:EXON_MRNA:INTRON	YME1L1	ENSG00000136758.20	ENST00000376016.8:ENST00000613434.4:ENST00000326799.7:ENST00000491542.6:ENST00000427324.5:ENST00000396296.7:ENST00000477432.1	protein_coding	protein_coding	protein_coding	protein_coding	21	122	2	1.16961	1.2650000000000001	1.36039	0.0598253	0.0196728	0.169278	0.120063
chr12	110346470	110346562	5226774	0	+	0.26087	[0,0.28]	chr12	495321	1	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	ATP2A2	ENSG00000174437.18	ENST00000308664.10:ENST00000539276.7:ENST00000377685.9:ENST00000548169.2:ENST00000313432.5:ENST00000553144.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	23	185	2	1.06767	1.26493	1.46219	0.0561774	0.0408704	0.18407	0.1451
chr17	50752432	50752531	6627325	0	+	0.272727	[0,0.28]	chr17	647268	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	LUC7L3	ENSG00000108848.16	ENST00000505658.6:ENST00000240304.5:ENST00000503728.1:ENST00000503798.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	45	376	2	1.2396	1.263985	1.28837	0.0414165	0.0169341	0.146067	0.110899
chr14	31022314	31022414	5857833	0	-	0.46	(0.44,0.476]	chr14	556512	72	INTRON	INTRON	STRN3	ENSG00000196792.12	ENST00000355683.9:ENST00000357479.10:ENST00000555358.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	23	133	2	1.14717	1.2636500000000002	1.38013	0.0532167	0.0181489	0.162538	0.114869
chr16	21858748	21858847	6461828	0	-	0.313131	(0.28,0.32]	chr16	623459	6	INTRON	INTRON	NPIPB4	ENSG00000185864.18	ENST00000539318.5:ENST00000536041.5:ENST00000543449.1:ENST00000541674.5:ENST00000544693.5:ENST00000538859.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	19	144	2	1.19062	1.26361	1.3366	0.0503993	0.0416088	0.17488	0.14669
chr1	145993472	145993566	541078	0	-	0.404255	(0.378,0.408]	chr1	63465	12	UTR3	UTR3:EXON_MRNA	TXNIP	ENSG00000265972.6	ENST00000582401.6:ENST00000488537.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	73	404	2	1.14563	1.2630249999999998	1.38042	0.0148478	0.0136525	0.106937	0.0949306
chr1	17407632	17407729	384653	0	-	0.319588	(0.28,0.32]	chr1	45432	10	UTR3	UTR3:EXON_MRNA	RCC2	ENSG00000179051.14	ENST00000375436.9	protein_coding	protein_coding	protein_coding	protein_coding	29	217	2	1.15178	1.262695	1.37361	0.038288	0.0263954	0.158472	0.122495
chr9	135949200	135949300	4372447	0	-	0.42	(0.408,0.44]	chr9	402541	9	INTRON	INTRON	UBAC1	ENSG00000130560.9	ENST00000371756.4:ENST00000478485.1:ENST00000486258.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	14	80	2	1.24846	1.26254	1.27662	0.0787183	0.0421865	0.198567	0.161744
chr11	64775897	64775997	4965280	0	-	0.35	(0.32,0.35]	chr11	467538	20	INTRON	INTRON	SF1	ENSG00000168066.21	ENST00000334944.9:ENST00000227503.13:ENST00000377394.7:ENST00000448404.5:ENST00000377390.8:ENST00000377387.5:ENST00000681407.1:ENST00000433274.6:ENST00000633899.1:ENST00000413951.5:ENST00000432725.1:ENST00000482693.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	15	104	2	1.1708	1.262385	1.35397	0.0641583	0.0475566	0.199375	0.153019
chr5	149352252	149352349	2516899	0	+	0.350515	(0.35,0.378]	chr5	240605	11	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	GRPEL2	ENSG00000164284.15	ENST00000329271.8:ENST00000507562.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	18	112	2	1.1094	1.2605499999999998	1.4117	0.0564409	0.0380767	0.184423	0.141678
chr11	65438949	65439049	4805932	0	+	0.45	(0.44,0.476]	chr11	446554	163	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	91	516	2	1.23708	1.260415	1.28375	0.0145281	0.00732853	0.0978257	0.076384
chr5	53945618	53945718	2617260	0	-	0.3	(0.28,0.32]	chr5	248835	336	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	14	106	2	1.19543	1.25999	1.32455	0.0781725	0.0474504	0.197251	0.169423
chr4	39705677	39705777	1953067	0	+	0.49	(0.476,0.515]	chr4	195630	69	INTRON	INTRON	UBE2K	ENSG00000078140.14	ENST00000510934.5:ENST00000261427.10:ENST00000438068.6:ENST00000513231.5:ENST00000503368.5:ENST00000445950.2:ENST00000510719.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	42	239	2	1.15826	1.25982	1.36138	0.032207	0.00944612	0.132543	0.0861733
chr1	35179195	35179292	420454	0	-	0.43299	(0.408,0.44]	chr1	50646	13	EXON_LNCRNA	EXON_LNCRNA:INTRON	SFPQ	ENSG00000116560.12	ENST00000470472.5:ENST00000460428.5:ENST00000468598.5:ENST00000485365.1:ENST00000490668.5:ENST00000466213.5	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	26	144	2	1.05168	1.2594750000000001	1.46727	0.046132	0.0218432	0.165723	0.11491
chr17	48911664	48911762	6624411	0	+	0.387755	(0.378,0.408]	chr17	646551	6	EXON_MRNA	EXON_MRNA:INTRON	UBE2Z	ENSG00000159202.18	ENST00000360943.10:ENST00000508468.2:ENST00000506498.5:ENST00000511373.1:ENST00000504684.5:ENST00000513342.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	79	2	1.23177	1.259175	1.28658	0.0747101	0.0499541	0.192652	0.17488
chr7	92245674	92245772	3570167	0	-	0.612245	(0.57,1]	chr7	332585	37	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ENSG00000289027:KRIT1	ENSG00000289027.1:ENSG00000001631.17	ENST00000692281.1:ENST00000394507.5:ENST00000692807.1:ENST00000340022.6:ENST00000394505.7:ENST00000458177.7:ENST00000684808.1:ENST00000444960.6:ENST00000691239.1:ENST00000686094.1:ENST00000686527.1:ENST00000690529.1:ENST00000689411.1:ENST00000688665.1:ENST00000692157.1:ENST00000686043.1:ENST00000690720.1:ENST00000692690.1:ENST00000690908.1:ENST00000691827.1:ENST00000690751.1:ENST00000425073.2:ENST00000687876.1:ENST00000690904.1:ENST00000688781.1:ENST00000686785.1:ENST00000689556.1:ENST00000688314.1:ENST00000688404.1:ENST00000690292.1:ENST00000687135.1:ENST00000454017.6:ENST00000692361.1:ENST00000689778.1:ENST00000686619.1:ENST00000688766.1:ENST00000685431.1:ENST00000689539.1:ENST00000412043.6:ENST00000394503.6:ENST00000433016.6:ENST00000445516.2:ENST00000686233.1:ENST00000692205.1:ENST00000687627.1:ENST00000688196.1:ENST00000692000.1:ENST00000692428.1:ENST00000685285.1:ENST00000691622.1:ENST00000430102.6:ENST00000440209.5:ENST00000691222.1:ENST00000687517.1:ENST00000422347.6:ENST00000689789.1:ENST00000489087.2:ENST00000691890.1:ENST00000413688.6:ENST00000425919.6:ENST00000452773.6:ENST00000466166.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	16	47	2	1.09783	1.25901	1.42019	0.0678042	0.0315411	0.184298	0.144381
chr4	82835759	82835859	2179517	0	-	0.33	(0.32,0.35]	chr4	214267	44	INTRON	INTRON	SEC31A	ENSG00000138674.17	ENST00000395310.7:ENST00000513858.5:ENST00000348405.8:ENST00000503937.5:ENST00000448323.5:ENST00000311785.11:ENST00000509142.5:ENST00000443462.6:ENST00000500777.6:ENST00000505472.5:ENST00000355196.6:ENST00000508502.5:ENST00000264405.9:ENST00000505984.5:ENST00000511338.1:ENST00000515749.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	21	142	2	1.20429	1.25792	1.31155	0.0585512	0.0260854	0.167915	0.133676
chr17	49051119	49051217	6625165	0	+	0.27551	[0,0.28]	chr17	646681	18	UTR3	UTR3:EXON_MRNA	IGF2BP1	ENSG00000159217.10	ENST00000290341.8	protein_coding	protein_coding	protein_coding	protein_coding	23	199	2	1.08871	1.257895	1.42708	0.0734784	0.0246086	0.190238	0.131869
chr21	37388099	37388199	7406435	0	+	0.46	(0.44,0.476]	chr21	754850	126	INTRON	INTRON	DYRK1A	ENSG00000157540.22	ENST00000646523.1:ENST00000647425.1:ENST00000647188.2:ENST00000647504.1:ENST00000644942.1:ENST00000338785.8:ENST00000643624.1:ENST00000643551.1:ENST00000426672.6:ENST00000398960.7	protein_coding	protein_coding	protein_coding	protein_coding	40	230	2	1.06079	1.25775	1.45471	0.0526848	0.00561755	0.161168	0.0678837
chr1	234606443	234606542	661459	0	-	0.373737	(0.35,0.378]	chr1	78268	23	UTR3	UTR3:EXON_MRNA	IRF2BP2	ENSG00000168264.11	ENST00000366609.4:ENST00000366610.7	protein_coding	protein_coding	protein_coding	protein_coding	25	158	2	1.04041	1.2570649999999999	1.47372	0.0658722	0.014478	0.181613	0.10521
chr5	139276650	139276748	2499198	0	+	0.44898	(0.44,0.476]	chr5	238870	1	INTRON	INTRON	MATR3:SNHG4	ENSG00000280987.4:ENSG00000281398.4	ENST00000509990.5:ENST00000506147.5:ENST00000512107.5:ENST00000648842.1:ENST00000448190.6:ENST00000361059.7:ENST00000506188.5:ENST00000507692.5:ENST00000394800.6:ENST00000502929.5:ENST00000504203.5:ENST00000514694.5:ENST00000513259.5:ENST00000507197.5:ENST00000509644.5:ENST00000505016.2:ENST00000505522.6:ENST00000514110.5:ENST00000508735.5:ENST00000502394.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	19	109	2	1.046	1.25595	1.4659	0.0683813	0.0269628	0.184298	0.135436
chr4	55412536	55412635	1960758	0	+	0.181818	[0,0.28]	chr4	196559	3	INTRON	INTRON	TMEM165	ENSG00000134851.13	ENST00000381334.10:ENST00000506198.5:ENST00000508404.5:ENST00000511710.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	23	185	2	1.12173	1.2557999999999998	1.38987	0.0502717	0.046958	0.168114	0.156383
chr5	28881427	28881527	2330564	0	+	0.44	(0.408,0.44]	chr5	225135	709	INTRON	INTRON	LINC02109	ENSG00000259786.7	ENST00000658190.1	lncRNA	lncRNA	lncRNA	lncRNA	14	83	2	1.17305	1.255425	1.3378	0.0660199	0.050805	0.181924	0.175989
chrX	73821441	73821540	7837732	0	-	0.323232	(0.32,0.35]	chrX	799584	9	EXON_LNCRNA	EXON_LNCRNA:SS3_PROX:INTRON	XIST	ENSG00000229807.13	ENST00000669898.1:ENST00000650627.1:ENST00000434839.3:ENST00000421322.3:ENST00000416330.2:ENST00000429829.6:ENST00000648829.1:ENST00000666954.1:ENST00000417942.5:ENST00000647913.2:ENST00000647696.1:ENST00000650366.1:ENST00000648607.1:ENST00000650548.1:ENST00000650186.1:ENST00000635841.2:ENST00000650637.1	lncRNA	lncRNA	lncRNA	lncRNA	48	303	2	1.05764	1.2552599999999998	1.45288	0.0316718	0.0154938	0.144603	0.100909
chr6	136283087	136283187	3231060	0	-	0.48	(0.476,0.515]	chr6	300407	4	SS3_PROX	SS3_PROX:INTRON	BCLAF1	ENSG00000029363.17	ENST00000640069.1:ENST00000531224.6:ENST00000353331.8:ENST00000527536.5:ENST00000527613.5:ENST00000530767.5:ENST00000527759.5:ENST00000534269.5:ENST00000532384.5:ENST00000530429.5:ENST00000628517.2:ENST00000529826.5:ENST00000528229.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	27	149	2	1.05492	1.2540499999999999	1.45318	0.0458005	0.0196481	0.16483	0.109608
chr16	28831272	28831372	6334420	0	+	0.35	(0.32,0.35]	chr16	606541	2	SS5_PROX	SS5_PROX:INTRON	ATXN2L	ENSG00000168488.19	ENST00000336783.9:ENST00000563314.5:ENST00000340394.12:ENST00000382686.8:ENST00000395547.6:ENST00000325215.10:ENST00000564304.5:ENST00000570200.5:ENST00000565971.5:ENST00000570284.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	28	190	2	1.01202	1.2539699999999998	1.49592	0.0749667	0.0102123	0.193306	0.089002
chr1	21159370	21159470	393455	0	-	0.42	(0.408,0.44]	chr1	46836	464	INTRON	INTRON	EIF4G3	ENSG00000075151.24	ENST00000374935.7:ENST00000602326.6:ENST00000685872.1:ENST00000686579.1:ENST00000688741.1:ENST00000400422.6:ENST00000634879.2:ENST00000693470.1:ENST00000685814.1:ENST00000356916.7:ENST00000682284.1:ENST00000438975.5:ENST00000411888.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	16	95	2	1.2196	1.253725	1.28785	0.051177	0.0494367	0.174213	0.157813
chr6	35834134	35834231	3087931	0	-	0.360825	(0.35,0.378]	chr6	288803	13	UTR3	UTR3:EXON_MRNA	SRPK1	ENSG00000096063.16	ENST00000373825.7:ENST00000423325.6:ENST00000346162.10:ENST00000361690.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	52	333	2	1.15431	1.253655	1.353	0.0231971	0.0133683	0.127196	0.0946278
chr13	110895421	110895521	5650445	0	-	0.51	(0.476,0.515]	chr13	538357	1	SS3_PROX	SS3_PROX:INTRON	ANKRD10:ANKRD10-IT1	ENSG00000088448.14:ENSG00000229152.2	ENST00000267339.6:ENST00000489973.6:ENST00000310847.8:ENST00000465753.1:ENST00000475809.1:ENST00000494859.5:ENST00000426991.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:nonsense_mediated_decay:lncRNA:processed_transcript	17	97	2	1.16414	1.2522	1.34026	0.0758174	0.0268263	0.194479	0.13507
chr2	96185350	96185448	1179750	0	-	0.387755	(0.378,0.408]	chr2	126118	6	UTR3	UTR3:EXON_MRNA	STARD7	ENSG00000084090.14	ENST00000337288.10:ENST00000479456.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	51	303	2	1.0479	1.251835	1.45577	0.0399981	0.00634358	0.143387	0.0723103
chr7	150284452	150284552	3673259	0	-	0.55	(0.515,0.57]	chr7	340877	3	SS5_PROX	SS5_PROX:INTRON	ACTR3C	ENSG00000106526.11	ENST00000478393.5:ENST00000683684.1:ENST00000252071.8	protein_coding	protein_coding	protein_coding	protein_coding	18	86	2	1.10233	1.25168	1.40103	0.0545701	0.0344012	0.182529	0.136012
chr19	12793015	12793115	7022128	0	+	0.44	(0.408,0.44]	chr19	698184	3	UTR3	UTR3:EXON_MRNA	JUNB	ENSG00000171223.6	ENST00000302754.6	protein_coding	protein_coding	protein_coding	protein_coding	17	100	2	1.12195	1.25098	1.38001	0.0581997	0.0444754	0.167723	0.162826
chr3	15835093	15835193	1624198	0	-	0.39	(0.378,0.408]	chr3	168034	204	INTRON	INTRON	ANKRD28	ENSG00000206560.12	ENST00000399451.6:ENST00000412318.5:ENST00000439830.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	15	89	2	1.23177	1.250695	1.26962	0.0747101	0.0395548	0.192652	0.161534
chr17	16441832	16441925	6562677	0	+	0.387097	(0.378,0.408]	chr17	637923	6	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:INTRON	SNHG29	ENSG00000175061.19	ENST00000475947.7:ENST00000584177.5:ENST00000487066.6:ENST00000580180.6:ENST00000660020.1:ENST00000665646.1:ENST00000481898.6:ENST00000660419.1:ENST00000668333.1:ENST00000667979.2:ENST00000663781.1:ENST00000664939.1:ENST00000491009.6:ENST00000583400.7:ENST00000654778.1:ENST00000497774.6:ENST00000669136.1:ENST00000659884.1:ENST00000582911.6:ENST00000666215.2:ENST00000580770.5:ENST00000581718.6:ENST00000579473.6:ENST00000581361.5:ENST00000692724.1:ENST00000689691.1:ENST00000686699.1:ENST00000483140.7:ENST00000477249.7:ENST00000484836.2:ENST00000655540.1:ENST00000475953.6:ENST00000470491.7:ENST00000480811.6:ENST00000662869.1:ENST00000671170.1:ENST00000658116.2:ENST00000685971.1:ENST00000689483.1:ENST00000688805.1:ENST00000692720.1:ENST00000653954.1:ENST00000581913.5:ENST00000481027.5:ENST00000472367.5:ENST00000483588.2:ENST00000478103.6:ENST00000658943.1:ENST00000690854.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	30	169	2	0.960337	1.2504885	1.54064	0.0577878	0.0149709	0.188495	0.0994339
chr11	65443942	65444042	4805982	0	+	0.5	(0.476,0.515]	chr11	446554	213	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	50	258	2	0.961128	1.2502339999999998	1.53934	0.0403916	0.00906629	0.161534	0.0807643
chr16	21434351	21434450	6460658	0	-	0.50505	(0.476,0.515]	chr16	623222	29	INTRON	INTRON	NPIPB3	ENSG00000169246.16	ENST00000521589.5:ENST00000545358.5:ENST00000543368.1:ENST00000544154.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	21	122	2	1.23524	1.24939	1.26354	0.0401772	0.0360251	0.161534	0.138959
chr6	47520717	47520817	2873995	0	+	0.4	(0.378,0.408]	chr6	272731	169	INTRON	INTRON	CD2AP	ENSG00000198087.7	ENST00000359314.5	protein_coding	protein_coding	protein_coding	protein_coding	21	125	2	1.13511	1.2492450000000002	1.36338	0.0675756	0.0197423	0.183856	0.120272
chr12	98515681	98515774	5198618	0	+	0.634409	(0.57,1]	chr12	491787	2	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	TMPO	ENSG00000120802.14	ENST00000548911.1:ENST00000556029.6:ENST00000343315.9:ENST00000266732.8:ENST00000393053.6:ENST00000546828.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	39	115	2	1.09714	1.248485	1.39983	0.0326684	0.00619149	0.145164	0.0677965
chr4	55399253	55399353	1960622	0	+	0.56	(0.515,0.57]	chr4	196544	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	TMEM165	ENSG00000134851.13	ENST00000381334.10:ENST00000506198.5:ENST00000508404.5:ENST00000511710.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	30	131	2	0.923318	1.248399	1.57348	0.0583203	0.0149632	0.189131	0.0994339
chr15	92900733	92900824	6103690	0	+	0.32967	(0.32,0.35]	chr15	581380	7	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	ENSG00000279765:CHD2	ENSG00000279765.3:ENSG00000173575.22	ENST00000629685.2:ENST00000630790.1:ENST00000626874.2:ENST00000627622.1:ENST00000394196.9:ENST00000635856.1:ENST00000420239.7:ENST00000628375.2:ENST00000629346.2:ENST00000625990.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	39	242	2	1.08233	1.2483300000000002	1.41433	0.0315095	0.024324	0.144381	0.12011
chr7	127591379	127591459	3402387	0	+	0.575	(0.57,1]	chr7	318058	2	UTR3	UTR3:EXON_MRNA	ARF5	ENSG00000004059.11	ENST00000463733.5:ENST00000000233.10	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	25	71	2	1.0271	1.2480449999999998	1.46899	0.0521258	0.014225	0.177083	0.0961169
chr7	139382939	139383038	3437826	0	+	0.525253	(0.515,0.57]	chr7	320340	64	INTRON	INTRON	LUC7L2:FMC1-LUC7L2	ENSG00000146963.18:ENSG00000269955.2	ENST00000541170.7:ENST00000541515.3:ENST00000608368.5:ENST00000619796.4:ENST00000354926.9:ENST00000456182.5:ENST00000263545.7:ENST00000463912.5:ENST00000498518.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	20	97	2	1.14686	1.2480449999999998	1.34923	0.0671586	0.0193076	0.183051	0.119831
chr7	74879576	74879675	3556646	0	-	0.272727	[0,0.28]	chr7	331156	108	INTRON	INTRON	STAG3L2	ENSG00000277072.5	ENST00000651031.1:ENST00000650988.1:ENST00000652688.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	15	129	2	1.23334	1.24672	1.2601	0.0765485	0.0537324	0.196164	0.180803
chr6	31534511	31534606	3078762	0	-	0.389474	(0.378,0.408]	chr6	286741	1	EXON_MRNA	EXON_MRNA:INTRON	DDX39B	ENSG00000198563.14	ENST00000458640.5:ENST00000462256.5:ENST00000376177.6:ENST00000484566.5:ENST00000396172.6:ENST00000482195.5:ENST00000431908.5:ENST00000481456.1:ENST00000427214.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	69	412	2	1.1108	1.2465549999999999	1.38231	0.0212413	0.00940835	0.123318	0.0817766
chr7	26198904	26198999	3506222	0	-	0.263158	[0,0.28]	chr7	327191	12	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	HNRNPA2B1	ENSG00000122566.22	ENST00000679318.1:ENST00000677339.1:ENST00000678501.1:ENST00000676903.1:ENST00000608362.2:ENST00000677631.1:ENST00000676749.1:ENST00000677574.1:ENST00000679123.1:ENST00000677906.1:ENST00000476233.2:ENST00000677669.1:ENST00000677321.1:ENST00000678277.1:ENST00000677571.1:ENST00000679124.1:ENST00000676932.1:ENST00000678973.1:ENST00000678183.1:ENST00000679021.1:ENST00000678035.1:ENST00000677075.1:ENST00000678075.1:ENST00000678631.1:ENST00000678998.1:ENST00000490912.6:ENST00000354667.8:ENST00000618183.5:ENST00000677839.1:ENST00000677037.1:ENST00000678449.1:ENST00000679001.1:ENST00000678962.1:ENST00000676524.1:ENST00000678935.1:ENST00000678675.1:ENST00000676746.1:ENST00000356674.8:ENST00000678431.1:ENST00000678697.1:ENST00000678779.1:ENST00000676497.1:ENST00000677396.1:ENST00000360787.8:ENST00000679243.1:ENST00000677656.1:ENST00000463181.5:ENST00000678884.1:ENST00000495810.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	57	477	2	1.04084	1.246265	1.45169	0.0410283	0.0160021	0.161534	0.101453
chr7	148874149	148874248	3670662	0	-	0.424242	(0.408,0.44]	chr7	340632	29	INTRON	INTRON	EZH2	ENSG00000106462.12	ENST00000683292.1:ENST00000320356.7:ENST00000492143.5:ENST00000478654.5:ENST00000350995.6:ENST00000460911.5:ENST00000683744.1:ENST00000682317.1:ENST00000682263.1:ENST00000476773.5:ENST00000483967.5:ENST00000498186.5:ENST00000483012.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	17	97	2	1.19131	1.246145	1.30098	0.0513909	0.0458022	0.164831	0.158422
chr8	102353980	102354080	4012164	0	-	0.34	(0.32,0.35]	chr8	367218	65	INTRON	INTRON	UBR5	ENSG00000104517.13	ENST00000520539.6:ENST00000220959.8:ENST00000521922.5	protein_coding	protein_coding	protein_coding	protein_coding	29	193	2	1.1356	1.246095	1.35659	0.0610811	0.0141882	0.172424	0.103638
chr1	225984501	225984601	646305	0	-	0.57	(0.515,0.57]	chr1	76574	19	UTR3	UTR3:EXON_MRNA	SDE2	ENSG00000143751.10	ENST00000272091.8	protein_coding	protein_coding	protein_coding	protein_coding	16	78	2	1.09474	1.2459	1.39706	0.0639026	0.041152	0.177824	0.161534
chrX	154787980	154788078	7915428	0	-	0.367347	(0.35,0.378]	chrX	806147	12	INTRON	INTRON	MPP1	ENSG00000130830.15	ENST00000369534.8:ENST00000413259.7:ENST00000439370.5:ENST00000393531.5:ENST00000453245.5:ENST00000494170.1:ENST00000462825.5:ENST00000393529.5:ENST00000475943.5:ENST00000428488.1:ENST00000488754.5:ENST00000417435.5:ENST00000488694.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	22	134	2	1.19657	1.245285	1.294	0.0724016	0.0210348	0.188044	0.122467
chr13	110904342	110904442	5650540	0	-	0.28	[0,0.28]	chr13	538375	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	ANKRD10	ENSG00000088448.14	ENST00000267339.6:ENST00000489973.6:ENST00000310847.8:ENST00000465753.1:ENST00000494859.5:ENST00000464579.1:ENST00000463156.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	50	408	2	1.11428	1.2448899999999998	1.3755	0.0320402	0.0245116	0.145026	0.12011
chr18	77993634	77993731	6990298	0	-	0.546392	(0.515,0.57]	chr18	691923	1	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	LINC01029	ENSG00000265843.3	ENST00000657337.1:ENST00000669341.1:ENST00000671271.1:ENST00000668585.1:ENST00000667842.1:ENST00000661306.1:ENST00000662598.1:ENST00000662085.1:ENST00000582805.1:ENST00000656930.1:ENST00000578833.3	lncRNA	lncRNA	lncRNA	lncRNA	39	186	2	1.04221	1.244385	1.44656	0.0379803	0.00922984	0.141571	0.0855292
chr12	93399578	93399677	5189163	0	+	0.363636	(0.35,0.378]	chr12	490816	3	UTR3	UTR3:EXON_MRNA	NUDT4	ENSG00000173598.14	ENST00000337179.9:ENST00000415493.7:ENST00000549992.5:ENST00000547014.5:ENST00000548662.5	protein_coding	protein_coding	protein_coding	protein_coding	33	201	2	1.22532	1.24379	1.26226	0.0406512	0.0173217	0.1451	0.112122
chr9	112222365	112222464	4316832	0	-	0.383838	(0.378,0.408]	chr9	397001	48	UTR3	UTR3:EXON_MRNA	PTBP3	ENSG00000119314.16	ENST00000334318.10:ENST00000458258.5:ENST00000374257.6:ENST00000374255.6	protein_coding	protein_coding	protein_coding	protein_coding	26	153	2	1.18618	1.242565	1.29895	0.048354	0.0199023	0.15348	0.120668
chrX	54564394	54564494	7664957	0	+	0.46	(0.44,0.476]	chrX	784797	39	UTR3	UTR3:EXON_MRNA:INTRON	GNL3L	ENSG00000130119.17	ENST00000674498.1:ENST00000360845.3	protein_coding	protein_coding	protein_coding	protein_coding	22	124	2	1.01911	1.242505	1.4659	0.0633455	0.0269628	0.177047	0.135436
chr16	88949516	88949616	6541022	0	-	0.49	(0.476,0.515]	chr16	634104	78	INTRON	INTRON	CBFA2T3	ENSG00000129993.15	ENST00000268679.9:ENST00000563640.1:ENST00000570046.1	protein_coding	protein_coding	protein_coding	protein_coding	27	152	2	0.957429	1.2424344999999999	1.52744	0.0764366	0.00965695	0.195958	0.0871511
chr12	124782811	124782908	5445755	0	-	0.360825	(0.35,0.378]	chr12	521219	1	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	SCARB1	ENSG00000073060.17	ENST00000339570.9:ENST00000261693.11:ENST00000679605.1:ENST00000681686.1:ENST00000680926.1:ENST00000680556.1:ENST00000680982.1:ENST00000680596.1:ENST00000681555.1:ENST00000681788.1:ENST00000415380.6:ENST00000681117.1:ENST00000681499.1:ENST00000545305.1:ENST00000538291.5:ENST00000546215.5:ENST00000535005.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	20	122	2	1.22528	1.2419850000000001	1.25869	0.0667895	0.0281233	0.183051	0.137084
chr3	10147330	10147427	1363170	0	+	0.391753	(0.378,0.408]	chr3	143677	3	INTRON	INTRON	VHL	ENSG00000134086.9	ENST00000696153.1:ENST00000256474.3:ENST00000696142.1:ENST00000345392.2:ENST00000696143.1:ENST00000477538.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	17	98	2	1.18285	1.241075	1.2993	0.0619087	0.0431531	0.174514	0.162255
chr4	62848	62948	1905385	0	+	0.31	(0.28,0.32]	chr4	191003	23	INTRON	INTRON	ZNF595	ENSG00000272602.6	ENST00000608255.2:ENST00000609518.5:ENST00000509152.3:ENST00000610261.6	protein_coding	protein_coding	protein_coding	protein_coding	27	199	2	1.04675	1.2405	1.43425	0.0687772	0.0172889	0.184298	0.111921
chrX	154777323	154777415	7739450	0	+	0.48913	(0.476,0.515]	chrX	792444	6	UTR3	UTR3:EXON_MRNA	DKC1	ENSG00000130826.19	ENST00000620277.4:ENST00000413910.6:ENST00000426673.6:ENST00000369550.10:ENST00000696579.1:ENST00000696578.1:ENST00000696577.1:ENST00000696580.1:ENST00000696581.1:ENST00000696582.1:ENST00000696583.1:ENST00000696627.1:ENST00000696628.1:ENST00000696587.1:ENST00000696588.1:ENST00000484317.6:ENST00000696589.1:ENST00000696590.1:ENST00000696591.1:ENST00000696592.1:ENST00000492372.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	20	109	2	1.09615	1.23959	1.38303	0.0495774	0.0390231	0.174685	0.143072
chr22	41285153	41285253	7591144	0	-	0.32	(0.28,0.32]	chr22	777377	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RANGAP1	ENSG00000100401.20	ENST00000356244.8:ENST00000405486.5:ENST00000422838.1	protein_coding	protein_coding	protein_coding	protein_coding	14	103	2	1.1967	1.23949	1.28228	0.0712835	0.061138	0.193423	0.185716
chr22	38491156	38491255	7587930	0	-	0.323232	(0.32,0.35]	chr22	776723	18	EXON_MRNA	EXON_MRNA:INTRON	DDX17	ENSG00000100201.23	ENST00000403230.3:ENST00000396821.8:ENST00000216019.11:ENST00000475004.6:ENST00000432525.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	26	175	2	1.13256	1.2390050000000001	1.34545	0.054391	0.0209467	0.164972	0.122348
chr7	2367640	2367735	3269761	0	+	0.526316	(0.515,0.57]	chr7	303838	2	INTRON	INTRON	EIF3B	ENSG00000106263.19	ENST00000360876.9:ENST00000397011.2:ENST00000466199.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	27	130	2	1.11377	1.238645	1.36352	0.0472473	0.0148536	0.15274	0.106952
chr9	133374538	133374638	4370433	0	-	0.24	[0,0.28]	chr9	402198	66	INTRON	INTRON	SURF4	ENSG00000148248.14	ENST00000545297.5:ENST00000613129.4:ENST00000618229.4:ENST00000371989.8:ENST00000485435.6:ENST00000467910.5:ENST00000371991.3:ENST00000371982.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	23	196	2	1.08569	1.238545	1.3914	0.0776517	0.0252671	0.196285	0.133676
chr2	61524670	61524769	1131087	0	-	0.50505	(0.476,0.515]	chr2	121618	11	INTRON	INTRON	XPO1	ENSG00000082898.19	ENST00000676553.1:ENST00000677556.1:ENST00000677814.1:ENST00000676771.1:ENST00000677803.1:ENST00000677239.1:ENST00000678790.1:ENST00000677928.1:ENST00000678182.1:ENST00000677150.1:ENST00000678172.1:ENST00000678360.1:ENST00000678081.1:ENST00000676889.1:ENST00000676783.1:ENST00000679035.1:ENST00000677422.1:ENST00000677417.1:ENST00000677813.1:ENST00000676999.1:ENST00000676667.1:ENST00000678263.1:ENST00000678877.1:ENST00000677933.1:ENST00000680228.1:ENST00000677289.1:ENST00000401558.7:ENST00000428210.5:ENST00000677290.1:ENST00000677850.1:ENST00000451765.6:ENST00000676789.1:ENST00000678741.1:ENST00000404992.6:ENST00000406957.5:ENST00000443240.5:ENST00000476585.5:ENST00000468259.1:ENST00000420673.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	34	189	2	1.22971	1.237695	1.24568	0.0318047	0.0184298	0.13151	0.116493
chr7	72900091	72900191	3329999	0	+	0.44	(0.408,0.44]	chr7	309565	86	INTRON	INTRON	POM121	ENSG00000196313.13	ENST00000627934.3:ENST00000395270.5	protein_coding	protein_coding	protein_coding	protein_coding	19	108	2	1.11484	1.237185	1.35953	0.0540395	0.0367385	0.181713	0.138959
chr11	65432758	65432858	4805870	0	+	0.46	(0.44,0.476]	chr11	446554	101	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2:ENST00000687943.1	lncRNA	lncRNA	lncRNA	lncRNA	118	659	2	1.17604	1.23647	1.2969	0.0166878	0.00597641	0.102762	0.0700606
chr16	21430609	21430708	6460620	0	-	0.515152	(0.476,0.515]	chr16	623218	48	INTRON	INTRON	NPIPB3	ENSG00000169246.16	ENST00000521589.5:ENST00000534903.1:ENST00000545358.5:ENST00000543368.1:ENST00000544154.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	23	127	2	0.957429	1.2363795	1.51533	0.0764366	0.0184991	0.195958	0.116738
chr19	11122773	11122873	7017171	0	+	0.36	(0.35,0.378]	chr19	697497	2	SS3_PROX	SS3_PROX:INTRON	LDLR	ENSG00000130164.14	ENST00000557933.5:ENST00000558518.6:ENST00000545707.5:ENST00000535915.5:ENST00000455727.6:ENST00000558013.5:ENST00000252444.9	protein_coding	protein_coding	protein_coding	protein_coding	19	120	2	1.11098	1.235765	1.36055	0.0631361	0.0337743	0.17699	0.146709
chr17	46126435	46126535	6784200	0	-	0.35	(0.32,0.35]	chr17	669216	52	INTRON	INTRON	KANSL1	ENSG00000120071.15	ENST00000574590.6:ENST00000572904.6:ENST00000432791.7:ENST00000575318.6:ENST00000638275.1:ENST00000262419.10:ENST00000648792.1:ENST00000639531.1:ENST00000639150.1:ENST00000639853.1:ENST00000571698.2:ENST00000639375.1:ENST00000638269.1:ENST00000576248.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	18	122	2	1.20429	1.2350400000000001	1.26579	0.0585512	0.0419833	0.167915	0.161744
chr16	21430215	21430313	6460616	0	-	0.479592	(0.476,0.515]	chr16	623218	44	INTRON	INTRON	NPIPB3	ENSG00000169246.16	ENST00000521589.5:ENST00000534903.1:ENST00000545358.5:ENST00000543368.1:ENST00000544154.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	24	136	2	1.23233	1.233785	1.23524	0.0360251	0.0327013	0.145164	0.138959
chr17	42275571	42275659	6772221	0	-	0.556818	(0.515,0.57]	chr17	666979	1	INTRON	INTRON	STAT5B	ENSG00000173757.10	ENST00000293328.8:ENST00000468312.1:ENST00000415845.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	22	106	2	1.04747	1.233775	1.42008	0.0682722	0.016102000000000002	0.184298	0.109464
chr3	197951158	197951215	1598738	0	+	0.561404	(0.515,0.57]	chr3	165702	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RPL35A	ENSG00000182899.17	ENST00000647248.2:ENST00000448864.6:ENST00000485439.5:ENST00000642387.1:ENST00000329092.12:ENST00000496582.5:ENST00000429437.5:ENST00000442341.5:ENST00000439255.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	49	213	2	0.885741	1.2335855	1.58143	0.0511882	0.00621457	0.176696	0.0680321
chr21	34085598	34085697	7401213	0	+	0.515152	(0.476,0.515]	chr21	753967	115	INTRON	INTRON	MRPS6:SLC5A3	ENSG00000243927.6:ENSG00000198743.7	ENST00000488492.5:ENST00000477091.5:ENST00000399312.3:ENST00000381151.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	15	85	2	1.19752	1.2325	1.26748	0.0689479	0.0453667	0.184298	0.164236
chr19	799807	799898	6992118	0	+	0.494505	(0.476,0.515]	chr19	692236	5	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	PTBP1	ENSG00000011304.22	ENST00000635647.1:ENST00000627714.2:ENST00000676227.1:ENST00000677277.1:ENST00000592804.2:ENST00000349038.8:ENST00000590887.5:ENST00000586481.5:ENST00000586944.5:ENST00000356948.11:ENST00000394601.8:ENST00000677717.1:ENST00000589575.5:ENST00000587191.3:ENST00000679114.1:ENST00000350092.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	16	91	2	1.19725	1.232365	1.26748	0.0605672	0.0453667	0.171122	0.164236
chr17	62038298	62038397	6810610	0	-	0.474747	(0.44,0.476]	chr17	672946	23	INTRON	INTRON	MED13	ENSG00000108510.10	ENST00000397786.7	protein_coding	protein_coding	protein_coding	protein_coding	22	114	2	1.01655	1.23211	1.44767	0.0549606	0.0386573	0.183604	0.142788
chr16	81464007	81464106	6405189	0	+	0.565657	(0.515,0.57]	chr16	615026	181	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8	protein_coding	protein_coding	protein_coding	protein_coding	13	63	2	1.22815	1.2303250000000001	1.2325	0.0710142	0.0576823	0.188193	0.185044
chr5	57245167	57245267	2358776	0	+	0.33	(0.32,0.35]	chr5	227598	76	INTRON	INTRON	GPBP1	ENSG00000062194.16	ENST00000424459.7:ENST00000514387.6:ENST00000506184.7:ENST00000511209.5:ENST00000264779.6:ENST00000513524.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	17	114	2	1.14289	1.23024	1.31759	0.0771493	0.0351553	0.196285	0.150046
chr1	26475247	26475347	50633	0	+	0.34	(0.32,0.35]	chr1	6389	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	HMGN2	ENSG00000198830.11	ENST00000361427.6:ENST00000460563.5:ENST00000463817.5:ENST00000619352.4:ENST00000467700.5:ENST00000466194.1:ENST00000493418.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	141	879	2	0.961543	1.2292565	1.49697	0.0321614	0.00561783	0.145026	0.0653997
chr5	137752048	137752148	2728996	0	-	0.39	(0.378,0.408]	chr5	256845	65	UTR3	UTR3:EXON_MRNA	HNRNPA0	ENSG00000177733.7	ENST00000314940.7	protein_coding	protein_coding	protein_coding	protein_coding	20	124	2	1.17446	1.229095	1.28373	0.0614357	0.0319668	0.193423	0.13174
chr1	44731112	44731170	436411	0	-	0.344828	(0.32,0.35]	chr1	52885	2	EXON_SMALL	EXON_SMALL	RNU5D-1	ENSG00000200169.1	ENST00000363299.1	snRNA	snRNA	snRNA	snRNA	179	1182	2	0.960097	1.2288934999999999	1.49769	0.043869	0.00227751	0.149208	0.0437013
chr4	82373912	82373991	2177541	0	-	0.64557	(0.57,1]	chr4	214160	4	UTR5	UTR5:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HNRNPD	ENSG00000138668.19	ENST00000313899.12:ENST00000353341.8:ENST00000352301.8:ENST00000513584.1:ENST00000507010.5:ENST00000515432.1:ENST00000503822.1:ENST00000509107.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	37	105	2	1.1546400000000001	1.22809	1.30154	0.0225495	0.0138393	0.117356	0.10247
chr18	9111358	9111457	6868680	0	+	0.383838	(0.378,0.408]	chr18	680510	60	INTRON	INTRON	NDUFV2	ENSG00000178127.13	ENST00000577703.1:ENST00000318388.11:ENST00000583375.5:ENST00000400033.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	40	228	2	1.14066	1.2277200000000001	1.31478	0.0520941	0.0100236	0.159717	0.0880564
chr9	37153840	37153940	4117992	0	+	0.36	(0.35,0.378]	chr9	375382	60	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000322831.6:ENST00000461038.5:ENST00000488607.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	27	165	2	1.02367	1.2268	1.42993	0.0553237	0.0214257	0.18407	0.114094
chrX	153759394	153759494	7911290	0	-	0.4	(0.378,0.408]	chrX	805122	205	INTRON	INTRON	PLXNB3-AS1	ENSG00000232725.1	ENST00000434284.1	lncRNA	lncRNA	lncRNA	lncRNA	22	129	2	0.989445	1.2264425	1.46344	0.078833	0.0192847	0.198807	0.119831
chr17	1846273	1846372	6546144	0	+	0.444444	(0.44,0.476]	chr17	634943	12	INTRON	INTRON	RPA1	ENSG00000132383.12	ENST00000571058.5:ENST00000570451.5:ENST00000254719.10:ENST00000571725.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	15	85	2	1.16973	1.2254649999999998	1.2812	0.0750733	0.0432173	0.193571	0.162255
chrX	154791468	154791568	7915466	0	-	0.37	(0.35,0.378]	chrX	806159	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MPP1	ENSG00000130830.15	ENST00000369534.8:ENST00000413259.7:ENST00000439370.5:ENST00000393531.5:ENST00000453245.5:ENST00000494170.1:ENST00000462825.5:ENST00000393529.5:ENST00000475943.5:ENST00000428488.1:ENST00000417435.5:ENST00000488694.1:ENST00000369531.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	25	150	2	1.20269	1.22505	1.24741	0.0491945	0.0284815	0.155556	0.138712
chr7	155298619	155298697	3451767	0	+	0.653846	(0.57,1]	chr7	322611	4	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	INSIG1	ENSG00000186480.13	ENST00000344756.8:ENST00000425172.1:ENST00000340368.9:ENST00000342407.5:ENST00000476756.1	protein_coding	protein_coding	protein_coding	protein_coding	31	87	2	0.996513	1.2249915	1.45347	0.0491755	0.00988003	0.174117	0.0838372
chr6	73520913	73521012	3139456	0	-	0.616162	(0.57,1]	chr6	292540	10	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	EEF1A1	ENSG00000156508.19	ENST00000676547.1:ENST00000309268.11:ENST00000610520.5:ENST00000316292.13:ENST00000356303.7:ENST00000331523.7:ENST00000490569.6:ENST00000678515.1:ENST00000676710.1:ENST00000678702.1:ENST00000677236.1:ENST00000455918.2:ENST00000491404.2:ENST00000488500.2:ENST00000495333.6:ENST00000678703.1:ENST00000677062.1:ENST00000678143.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	42	123	2	0.980851	1.2247855	1.46872	0.0475102	0.0039175	0.169618	0.0548259
chr3	177140232	177140332	1871873	0	-	0.47	(0.44,0.476]	chr3	187422	41	INTRON	INTRON	TBL1XR1	ENSG00000177565.18	ENST00000457928.7:ENST00000430069.5:ENST00000673974.1:ENST00000352800.10:ENST00000422442.6:ENST00000428970.5:ENST00000424913.5:ENST00000437738.5:ENST00000431421.5:ENST00000635794.1:ENST00000630796.2:ENST00000450267.5:ENST00000630833.2:ENST00000431674.5:ENST00000422066.5:ENST00000443315.5:ENST00000627825.2:ENST00000427349.5:ENST00000413084.5:ENST00000637137.1:ENST00000491623.2:ENST00000637544.1:ENST00000636187.1:ENST00000636912.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	18	97	2	1.09855	1.22416	1.34977	0.0526931	0.0522828	0.178506	0.160182
chr17	58003718	58003818	6800014	0	-	0.33	(0.32,0.35]	chr17	671424	29	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	ENSG00000266086:SRSF1	ENSG00000266086.3:ENSG00000136450.13	ENST00000578794.2:ENST00000665125.1:ENST00000258962.5:ENST00000582730.6:ENST00000581497.1:ENST00000584668.5:ENST00000581979.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	213	1402	2	1.05136	1.2237550000000001	1.39615	0.0300186	0.00373443	0.129138	0.0562234
chr3	177196620	177196720	1872444	0	-	0.43	(0.408,0.44]	chr3	187451	1	SS5_PROX	SS5_PROX:INTRON	TBL1XR1	ENSG00000177565.18	ENST00000457928.7:ENST00000673974.1:ENST00000352800.10:ENST00000422442.6:ENST00000431421.5:ENST00000635794.1:ENST00000450267.5:ENST00000630833.2:ENST00000431674.5:ENST00000422066.5:ENST00000627825.2:ENST00000427349.5:ENST00000413084.5:ENST00000637544.1:ENST00000636187.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	16	89	2	1.19131	1.2235550000000002	1.2558	0.0690037	0.0458022	0.184298	0.164831
chr19	45859701	45859801	7193830	0	-	0.49	(0.476,0.515]	chr19	728658	40	INTRON	INTRON	SYMPK	ENSG00000125755.19	ENST00000245934.12:ENST00000593504.5:ENST00000599460.5:ENST00000598896.5:ENST00000602061.5:ENST00000598059.5:ENST00000594293.5:ENST00000593959.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	16	91	2	1.16233	1.22205	1.28177	0.0635535	0.0465341	0.198287	0.151426
chr5	138510164	138510264	2732327	0	-	0.49	(0.476,0.515]	chr5	257370	2	SS5_PROX	SS5_PROX:INTRON	ETF1	ENSG00000120705.13	ENST00000360541.10:ENST00000499810.6:ENST00000503014.5	protein_coding	protein_coding	protein_coding	protein_coding	13	74	2	1.16414	1.221585	1.27903	0.0758174	0.0608608	0.194479	0.19287
chr6	85678648	85678748	3151827	0	-	0.61	(0.57,1]	chr6	293950	61	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ENSG00000271793:SNHG5	ENSG00000271793.2:ENSG00000203875.13	ENST00000682106.1:ENST00000655847.1:ENST00000673729.1:ENST00000673640.1:ENST00000673769.1:ENST00000658383.1:ENST00000623901.4:ENST00000656441.1:ENST00000657203.1:ENST00000659276.1:ENST00000659725.1:ENST00000668100.1:ENST00000652832.1:ENST00000623163.4:ENST00000650155.1:ENST00000624128.2:ENST00000589187.5:ENST00000673721.1:ENST00000666607.1:ENST00000661011.1:ENST00000658742.1:ENST00000658584.1:ENST00000661487.1:ENST00000666667.1:ENST00000665113.1:ENST00000671327.1:ENST00000622963.4:ENST00000587692.6:ENST00000669160.1:ENST00000667637.1:ENST00000671650.1:ENST00000656092.1:ENST00000658077.1:ENST00000655116.1:ENST00000670094.1:ENST00000654795.1:ENST00000658919.1:ENST00000660318.1:ENST00000431043.2:ENST00000663073.1:ENST00000667693.1:ENST00000669413.1:ENST00000663448.1:ENST00000667421.1:ENST00000668505.1:ENST00000657339.1:ENST00000420199.6:ENST00000659811.1:ENST00000662914.1:ENST00000664198.1:ENST00000664449.1:ENST00000665270.1:ENST00000669678.1:ENST00000658836.1:ENST00000655834.1:ENST00000623910.4:ENST00000667289.1:ENST00000657398.1:ENST00000659484.1:ENST00000660580.1:ENST00000661360.1:ENST00000662245.1:ENST00000667545.1:ENST00000655881.1:ENST00000663133.1:ENST00000668512.1:ENST00000414002.6:ENST00000427501.6:ENST00000435947.6:ENST00000664396.1:ENST00000669824.1:ENST00000665041.1:ENST00000670410.1:ENST00000369605.9:ENST00000658871.1:ENST00000428833.6:ENST00000623001.4:ENST00000660949.1:ENST00000666912.1:ENST00000667622.1:ENST00000670327.1:ENST00000425170.2:ENST00000433843.2	protein_coding	retained_intron	protein_coding:lncRNA	retained_intron:lncRNA:processed_transcript	30	85	2	1.11488	1.22037	1.32586	0.0395509	0.0134079	0.143072	0.10111
chr11	65438849	65438949	4805931	0	+	0.32	(0.28,0.32]	chr11	446554	162	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	102	726	2	1.14866	1.2201	1.29154	0.0298011	0.00928923	0.129138	0.0855292
chr18	9111557	9111657	6868682	0	+	0.5	(0.476,0.515]	chr18	680510	62	INTRON	INTRON	NDUFV2	ENSG00000178127.13	ENST00000577703.1:ENST00000318388.11:ENST00000583375.5:ENST00000400033.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	42	235	2	1.02983	1.219785	1.40974	0.0605541	0.00633815	0.171122	0.0722944
chr13	110895721	110895821	5650448	0	-	0.31	(0.28,0.32]	chr13	538357	4	SS3_PROX	SS3_PROX:INTRON	ANKRD10:ANKRD10-IT1	ENSG00000088448.14:ENSG00000229152.2	ENST00000267339.6:ENST00000489973.6:ENST00000310847.8:ENST00000465753.1:ENST00000475809.1:ENST00000494859.5:ENST00000426991.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:nonsense_mediated_decay:lncRNA:processed_transcript	36	251	2	1.14539	1.2168	1.28821	0.0353382	0.0300104	0.142135	0.137535
chr7	135926857	135926956	3648964	0	-	0.373737	(0.35,0.378]	chr7	339198	2	UTR3	UTR3:EXON_MRNA	MTPN	ENSG00000105887.11	ENST00000393085.4	protein_coding	protein_coding	protein_coding	protein_coding	22	127	2	0.995846	1.216153	1.43646	0.0638283	0.0351612	0.19913	0.137535
chr11	65441645	65441745	4805959	0	+	0.24	[0,0.28]	chr11	446554	190	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	44	360	2	1.17853	1.21519	1.25185	0.0371034	0.0279962	0.139206	0.137011
chr14	101765762	101765861	5818535	0	+	0.50505	(0.476,0.515]	chr14	551818	6	UTR3	UTR3:EXON_MRNA:INTRON	PPP2R5C	ENSG00000078304.20	ENST00000694906.1:ENST00000422945.6:ENST00000554442.5:ENST00000556068.5:ENST00000556260.6:ENST00000328724.9:ENST00000554504.1:ENST00000553890.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	42	234	2	1.15411	1.21491	1.27571	0.0284779	0.0169822	0.12666	0.110899
chr5	57242468	57242568	2358749	0	+	0.43	(0.408,0.44]	chr5	227598	49	INTRON	INTRON	GPBP1	ENSG00000062194.16	ENST00000424459.7:ENST00000514387.6:ENST00000506184.7:ENST00000511209.5:ENST00000264779.6:ENST00000513524.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	25	141	2	1.18182	1.2148150000000002	1.24781	0.04435	0.028136	0.149888	0.137145
chr1	20743515	20743614	389416	0	-	0.606061	(0.57,1]	chr1	46510	34	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	HP1BP3	ENSG00000127483.19	ENST00000438032.6:ENST00000312239.10:ENST00000375003.6:ENST00000488722.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	31	87	2	1.04631	1.214635	1.38296	0.0423683	0.0124447	0.148082	0.0973643
chr3	149031122	149031222	1840422	0	-	0.26	[0,0.28]	chr3	185066	11	UTR3	UTR3:EXON_MRNA	HLTF	ENSG00000071794.16	ENST00000310053.10:ENST00000465259.5:ENST00000392912.6:ENST00000494055.5	protein_coding	protein_coding	protein_coding	protein_coding	22	181	2	1.12309	1.214455	1.30582	0.054309	0.0512239	0.182243	0.157944
chr3	108052563	108052662	1768898	0	-	0.373737	(0.35,0.378]	chr3	178921	7	EXON_MRNA	EXON_MRNA:INTRON	CD47	ENSG00000196776.17	ENST00000361309.6:ENST00000355354.13:ENST00000471694.1:ENST00000517766.5:ENST00000398258.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	16	96	2	1.10732	1.2141350000000002	1.32095	0.0619709	0.0594109	0.193945	0.16883600000000001
chr20	50124859	50124958	7354061	0	-	0.474747	(0.44,0.476]	chr20	749910	68	UTR3	UTR3:EXON_MRNA	PEDS1	ENSG00000240849.11	ENST00000371652.9:ENST00000371650.9:ENST00000371656.3:ENST00000453505.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	33	186	2	1.1918	1.213825	1.23585	0.028413	0.0265666	0.138381	0.122983
chr16	29613002	29613102	6471731	0	-	0.64	(0.57,1]	chr16	625303	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ENSG00000288632	ENSG00000288632.1	ENST00000675579.1	lncRNA	lncRNA	lncRNA	lncRNA	18	52	2	1.21352	1.213775	1.21403	0.0635872	0.0357902	0.198385	0.138745
chr22	31957422	31957512	7507029	0	+	0.4	(0.378,0.408]	chr22	766161	8	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	YWHAH	ENSG00000128245.15	ENST00000397492.1:ENST00000248975.6:ENST00000471374.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	31	178	2	1.20426	1.213705	1.22315	0.0393085	0.0226929	0.143072	0.124921
chr11	65430861	65430961	4805851	0	+	0.24	[0,0.28]	chr11	446554	82	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	64	515	2	1.14474	1.2134200000000002	1.2821	0.0286425	0.025697	0.133676	0.126996
chr1	112912916	112913014	523703	0	-	0.306122	(0.28,0.32]	chr1	61661	12	UTR3	UTR3:EXON_MRNA	SLC16A1	ENSG00000155380.13	ENST00000679803.1:ENST00000369626.8:ENST00000443580.6:ENST00000538576.5:ENST00000429288.2:ENST00000458229.6	protein_coding	protein_coding	protein_coding	protein_coding	17	124	2	1.16768	1.211725	1.25577	0.0597649	0.0589905	0.189982	0.167915
chr7	148822463	148822563	3670134	0	-	0.37	(0.35,0.378]	chr7	340580	17	INTRON	INTRON	EZH2	ENSG00000106462.12	ENST00000683292.1:ENST00000320356.7:ENST00000492143.5:ENST00000478654.5:ENST00000350995.6:ENST00000460911.5:ENST00000683744.1:ENST00000682317.1:ENST00000682263.1:ENST00000684300.1:ENST00000476773.5:ENST00000483967.5:ENST00000498186.5:ENST00000483012.1:ENST00000682401.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	23	142	2	1.07806	1.2105700000000001	1.34308	0.0616499	0.0274048	0.173994	0.136498
chr12	123408576	123408673	5242829	0	+	0.278351	[0,0.28]	chr12	498222	10	UTR3	UTR3:EXON_MRNA	KMT5A	ENSG00000183955.14	ENST00000402868.8	protein_coding	protein_coding	protein_coding	protein_coding	23	190	2	1.17218	1.2098900000000001	1.2476	0.0689056	0.0358581	0.184298	0.152277
chr11	65444142	65444241	4805984	0	+	0.616162	(0.57,1]	chr11	446554	215	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	60	170	2	1.00454	1.20934	1.41414	0.0353815	0.00273569	0.137535	0.0483437
chr2	61478536	61478630	1130584	0	-	0.37234	(0.35,0.378]	chr2	121505	10	UTR3	UTR3:EXON_MRNA	XPO1	ENSG00000082898.19	ENST00000677110.1:ENST00000678113.1:ENST00000676553.1:ENST00000677556.1:ENST00000677814.1:ENST00000676771.1:ENST00000677803.1:ENST00000677239.1:ENST00000678790.1:ENST00000677928.1:ENST00000678182.1:ENST00000677150.1:ENST00000678172.1:ENST00000678360.1:ENST00000678081.1:ENST00000676889.1:ENST00000676783.1:ENST00000679035.1:ENST00000677422.1:ENST00000677417.1:ENST00000677813.1:ENST00000676999.1:ENST00000676667.1:ENST00000678263.1:ENST00000678877.1:ENST00000677933.1:ENST00000680228.1:ENST00000677289.1:ENST00000677190.1:ENST00000481073.6:ENST00000677476.1:ENST00000469337.2:ENST00000401558.7:ENST00000428210.5:ENST00000677290.1:ENST00000677850.1:ENST00000678640.1:ENST00000676778.1:ENST00000451765.6:ENST00000676789.1:ENST00000678741.1:ENST00000404992.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	63	383	2	0.860563	1.2090565	1.55755	0.0760984	0.00289888	0.195155	0.0494641
chr17	59840985	59841083	6643745	0	+	0.27551	[0,0.28]	chr17	648787	12	UTR3	UTR3:EXON_MRNA	VMP1	ENSG00000062716.13	ENST00000262291.9:ENST00000592790.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	27	213	2	1.09324	1.2071800000000001	1.32112	0.0490063	0.0478066	0.170512	0.155159
chrX	120437379	120437478	7876163	0	-	0.373737	(0.35,0.378]	chrX	802096	10	UTR3	UTR3:EXON_MRNA:INTRON	LAMP2	ENSG00000005893.16	ENST00000200639.9:ENST00000434600.6:ENST00000486593.5:ENST00000371335.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	20	122	2	1.1333	1.20675	1.2802	0.0695039	0.0310365	0.184298	0.143457
chr12	110285871	110285970	5226144	0	+	0.393939	(0.378,0.408]	chr12	495234	27	INTRON	INTRON	ATP2A2	ENSG00000174437.18	ENST00000552636.2:ENST00000308664.10:ENST00000539276.7:ENST00000377685.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	23	120	2	1.07578	1.206645	1.33751	0.0677318	0.0407994	0.18426	0.161534
chr22	20950625	20950722	7480851	0	+	0.608247	(0.57,1]	chr22	763101	9	UTR3	UTR3:EXON_MRNA:INTRON	CRKL	ENSG00000099942.13	ENST00000354336.8:ENST00000411769.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	79	219	2	1.18867	1.206245	1.22382	0.0089074	0.00812713	0.0849778	0.0766625
chr20	32789512	32789611	7256935	0	+	0.424242	(0.408,0.44]	chr20	737157	1	INTRON	INTRON	DNMT3B	ENSG00000088305.19	ENST00000696232.1:ENST00000328111.6:ENST00000696231.1:ENST00000348286.6:ENST00000353855.6:ENST00000696233.1:ENST00000443239.7:ENST00000696234.1:ENST00000696235.1:ENST00000456297.6:ENST00000696236.1:ENST00000201963.3:ENST00000696238.1:ENST00000696239.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	27	150	2	1.20074	1.205115	1.20949	0.0415737	0.028195	0.146571	0.13742
chr8	23570538	23570637	3715519	0	+	0.363636	(0.35,0.378]	chr8	345238	17	INTRON	INTRON	SLC25A37	ENSG00000147454.14	ENST00000519973.6:ENST00000290075.10:ENST00000417331.6:ENST00000518881.5:ENST00000523930.1:ENST00000523883.5:ENST00000522164.5:ENST00000521637.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	47	275	2	1.1035	1.2050649999999998	1.30663	0.0261095	0.0224472	0.133676	0.11692
chr11	65442444	65442544	4805967	0	+	0.6	(0.57,1]	chr11	446554	198	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	40	110	2	1.18604	1.203435	1.22083	0.0297015	0.0120546	0.129021	0.0962311
chr7	148815954	148816045	3670062	0	-	0.21978	[0,0.28]	chr7	340565	1	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	EZH2	ENSG00000106462.12	ENST00000683292.1:ENST00000320356.7:ENST00000492143.5:ENST00000478654.5:ENST00000350995.6:ENST00000460911.5:ENST00000684400.1:ENST00000683744.1:ENST00000684510.1:ENST00000682317.1:ENST00000683293.1:ENST00000682263.1:ENST00000684300.1:ENST00000476773.5:ENST00000483967.5:ENST00000684436.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	25	199	2	1.05383	1.2025299999999999	1.35123	0.0587566	0.0448684	0.189982	0.149888
chr8	23568065	23568161	3715492	0	+	0.34375	(0.32,0.35]	chr8	345233	14	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	SLC25A37	ENSG00000147454.14	ENST00000519973.6:ENST00000290075.10:ENST00000417331.6:ENST00000518881.5:ENST00000520654.1:ENST00000523930.1:ENST00000523883.5:ENST00000522164.5:ENST00000521637.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	106	671	2	0.884429	1.2020795	1.51973	0.0483141	0.00550524	0.172011	0.0648867
chr17	64499725	64499823	6815799	0	-	0.326531	(0.32,0.35]	chr17	673788	16	UTR3	UTR3:EXON_MRNA	DDX5	ENSG00000108654.16	ENST00000225792.10:ENST00000678890.1:ENST00000676601.1:ENST00000676575.1:ENST00000676969.1:ENST00000678810.1:ENST00000585317.2:ENST00000678110.1:ENST00000580026.6:ENST00000678757.1:ENST00000676581.1:ENST00000676785.1:ENST00000585111.2:ENST00000577922.6:ENST00000450599.7:ENST00000678814.1:ENST00000677726.1:ENST00000583212.2:ENST00000579461.2:ENST00000540698.6:ENST00000581230.5:ENST00000581693.5:ENST00000582326.2:ENST00000578491.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	53	341	2	1.04123	1.20198	1.36273	0.0350166	0.0160774	0.149485	0.101453
chr2	144485023	144485123	1241454	0	-	0.34	(0.32,0.35]	chr2	131732	28	INTRON	INTRON	ZEB2	ENSG00000169554.23	ENST00000636471.1:ENST00000627532.3:ENST00000638128.1:ENST00000637304.1:ENST00000636179.1:ENST00000419938.5:ENST00000409487.7:ENST00000636732.2:ENST00000636026.2:ENST00000675069.1:ENST00000689298.1:ENST00000539609.7:ENST00000558170.6:ENST00000303660.8:ENST00000427902.5:ENST00000637267.2:ENST00000392861.6:ENST00000431672.4:ENST00000409211.5:ENST00000465308.5:ENST00000434448.5:ENST00000472146.5:ENST00000461784.3:ENST00000476394.5:ENST00000637591.2:ENST00000479735.1:ENST00000453352.5:ENST00000435831.5:ENST00000444559.5:ENST00000630572.2:ENST00000484313.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	15	99	2	1.20134	1.201685	1.20203	0.0737029	0.0583213	0.190643	0.189131
chr11	83158687	83158783	4840809	0	+	0.395833	(0.378,0.408]	chr11	451493	12	EXON_MRNA	EXON_MRNA:INTRON	PCF11	ENSG00000165494.12	ENST00000298281.8:ENST00000530660.5:ENST00000690938.1:ENST00000530304.5:ENST00000533018.1:ENST00000624931.1	protein_coding	protein_coding	protein_coding	protein_coding:TEC	26	147	2	1.17437	1.1998099999999998	1.22525	0.0546489	0.0252123	0.165463	0.133663
chr8	100720120	100720212	4005574	0	-	0.423913	(0.408,0.44]	chr8	366627	6	INTRON	INTRON	PABPC1	ENSG00000070756.17	ENST00000677140.1:ENST00000677787.1:ENST00000678709.1:ENST00000676662.1:ENST00000677765.1:ENST00000522720.2:ENST00000520804.2:ENST00000521865.6:ENST00000677478.1:ENST00000677380.1:ENST00000520142.2:ENST00000677775.1:ENST00000678954.1:ENST00000318607.10:ENST00000679197.1:ENST00000519100.6:ENST00000519004.5:ENST00000522387.5:ENST00000522658.6:ENST00000678822.1:ENST00000523555.6:ENST00000610907.2:ENST00000517921.2:ENST00000518196.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	21	119	2	1.07394	1.19979	1.32564	0.0561331	0.0437289	0.166015	0.162255
chrX	73850225	73850325	7838026	0	-	0.29	(0.28,0.32]	chrX	799611	129	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	XIST	ENSG00000229807.13	ENST00000650627.1:ENST00000434839.3:ENST00000429829.6:ENST00000635841.2:ENST00000650637.1:ENST00000648970.1	lncRNA	lncRNA	lncRNA	lncRNA	31	216	2	1.14125	1.1988	1.25635	0.0418184	0.0348988	0.149008	0.147167
chr17	50748289	50748388	6627277	0	+	0.414141	(0.408,0.44]	chr17	647245	12	INTRON	INTRON	LUC7L3	ENSG00000108848.16	ENST00000393227.6:ENST00000505658.6:ENST00000240304.5:ENST00000508482.5:ENST00000504065.5:ENST00000509487.1:ENST00000511974.5:ENST00000513969.5:ENST00000503728.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	21	116	2	1.16961	1.19698	1.22435	0.0598253	0.0335387	0.169278	0.146709
chr2	74153906	74154005	1156876	0	-	0.525253	(0.515,0.57]	chr2	123692	15	UTR3	UTR3:EXON_MRNA	MOB1A	ENSG00000114978.18	ENST00000396049.5	protein_coding	protein_coding	protein_coding	protein_coding	24	111	2	0.978237	1.1960484999999998	1.41386	0.0669051	0.0219807	0.183051	0.123836
chr22	38485734	38485834	7587872	0	-	0.35	(0.32,0.35]	chr22	776711	24	UTR3	UTR3:EXON_MRNA	DDX17	ENSG00000100201.23	ENST00000403230.3:ENST00000396821.8:ENST00000431312.2:ENST00000216019.11	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	162	1039	2	0.922279	1.1943495	1.46642	0.0504472	0.00298682	0.156383	0.0503454
chr19	12942743	12942840	7022512	0	+	0.505155	(0.476,0.515]	chr19	698295	14	INTRON	INTRON	CALR	ENSG00000179218.15	ENST00000316448.10:ENST00000586967.2:ENST00000586760.2:ENST00000680816.1:ENST00000588454.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	20	107	2	1.18825	1.192885	1.19752	0.0689479	0.035509400000000003	0.184298	0.151306
chr22	21780469	21780569	7560508	0	-	0.42	(0.408,0.44]	chr22	773360	71	INTRON	INTRON	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	25	136	2	1.02422	1.19224	1.36026	0.0562638	0.0284966	0.184175	0.12666
chr3	157156435	157156535	1844665	0	-	0.3	(0.28,0.32]	chr3	185660	1	SS5_PROX	SS5_PROX:INTRON	CCNL1	ENSG00000163660.12	ENST00000461804.5:ENST00000295926.8:ENST00000631619.1:ENST00000475298.5:ENST00000470121.5:ENST00000476367.5:ENST00000477127.5:ENST00000478454.5:ENST00000479596.5:ENST00000465947.5:ENST00000467081.1:ENST00000464575.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	17	117	2	1.10188	1.19208	1.28228	0.0712835	0.0615396	0.193423	0.185716
chr5	139510332	139510427	2500140	0	+	0.4	(0.378,0.408]	chr5	239014	6	EXON_LNCRNA	EXON_LNCRNA	ENSG00000286403	ENSG00000286403.1	ENST00000657350.1	lncRNA	lncRNA	lncRNA	lncRNA	34	197	2	1.09357	1.189935	1.2863	0.0419713	0.0226043	0.147684	0.124921
chr9	131181789	131181889	4216207	0	+	0.35	(0.32,0.35]	chr9	386630	30	INTRON	INTRON	NUP214	ENSG00000126883.19	ENST00000695497.1:ENST00000695498.1:ENST00000695496.1:ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000525980.5:ENST00000526346.5:ENST00000531929.5:ENST00000651334.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	24	154	2	1.13756	1.189175	1.24079	0.0654077	0.0291638	0.180427	0.141536
chr10	73056980	73057080	4647442	0	-	0.48	(0.476,0.515]	chr10	427530	30	INTRON	INTRON	P4HA1	ENSG00000122884.13	ENST00000394890.7:ENST00000307116.6:ENST00000373008.6:ENST00000440381.5:ENST00000263556.3	protein_coding	protein_coding	protein_coding	protein_coding	30	162	2	1.11029	1.18872	1.26715	0.0371899	0.0296923	0.155878	0.128984
chr10	68970580	68970670	4443639	0	+	0.4	(0.378,0.408]	chr10	409869	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DDX21	ENSG00000165732.14	ENST00000685106.1:ENST00000687162.1:ENST00000684824.1:ENST00000354185.9:ENST00000686528.1:ENST00000690650.1:ENST00000690316.1:ENST00000620315.2:ENST00000685513.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	17	98	2	1.17786	1.187125	1.19639	0.0626432	0.0538684	0.181196	0.175915
chr5	66156562	66156660	2372613	0	+	0.377551	(0.35,0.378]	chr5	228659	6	UTR3	UTR3:EXON_MRNA:INTRON	SREK1	ENSG00000153914.16	ENST00000521691.5:ENST00000612404.4:ENST00000334121.11:ENST00000520953.5:ENST00000522912.5:ENST00000524111.5:ENST00000380918.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	39	234	2	0.994011	1.1867755	1.37954	0.0614014	0.0113153	0.173323	0.094829
chr12	108645207	108645307	5405895	0	-	0.41	(0.408,0.44]	chr12	515953	2	UTR3	UTR3:EXON_MRNA	CORO1C	ENSG00000110880.11	ENST00000261401.8:ENST00000420959.6	protein_coding	protein_coding	protein_coding	protein_coding	59	324	2	0.907379	1.1859145	1.46445	0.051128	0.00729083	0.176696	0.0733514
chr21	33524291	33524386	7441203	0	-	0.515789	(0.515,0.57]	chr21	759442	4	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	GART	ENSG00000159131.17	ENST00000381839.7:ENST00000381831.7:ENST00000424203.5:ENST00000381815.9:ENST00000460305.1:ENST00000467575.1:ENST00000361093.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	22	102	2	1.03175	1.1842899999999998	1.33683	0.0589165	0.0345068	0.167915	0.148025
chr11	65427366	65427466	4805816	0	+	0.58	(0.57,1]	chr11	446554	47	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	39	103	2	0.899096	1.183973	1.46885	0.0547644	0.00809494	0.182954	0.0766625
chr3	52692371	52692462	1429257	0	+	0.516484	(0.515,0.57]	chr3	151008	1	SS3_PROX	SS3_PROX:INTRON	GNL3	ENSG00000163938.17	ENST00000394799.6:ENST00000418458.6:ENST00000496254.5:ENST00000484022.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	26	120	2	0.999709	1.1834894999999999	1.36727	0.0622527	0.0200975	0.175343	0.121208
chr6	159680702	159680801	3253742	0	-	0.50505	(0.476,0.515]	chr6	302436	118	UTR3	UTR3:EXON_MRNA:INTRON	SOD2	ENSG00000112096.19	ENST00000538183.7:ENST00000546260.5:ENST00000367055.8:ENST00000367054.6:ENST00000546087.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	32	181	2	1.09615	1.182615	1.26908	0.0495774	0.0208025	0.174685	0.111526
chr7	151511020	151511120	3674837	0	-	0.39	(0.378,0.408]	chr7	341207	125	INTRON	INTRON	RHEB	ENSG00000106615.10	ENST00000262187.10:ENST00000472642.5:ENST00000478470.5:ENST00000496004.5:ENST00000470370.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	29	165	2	1.04859	1.182545	1.3165	0.0623551	0.0184881	0.175357	0.116694
chr17	32350208	32350285	6597972	0	+	0.467532	(0.44,0.476]	chr17	641872	2	UTR5	UTR5:EXON_MRNA	ZNF207	ENSG00000010244.19	ENST00000321233.10:ENST00000394673.6:ENST00000394670.9:ENST00000579634.5:ENST00000580759.5:ENST00000342555.10:ENST00000577908.5:ENST00000394679.9:ENST00000582165.1:ENST00000577324.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	35	181	2	0.913182	1.182496	1.45181	0.0619645	0.0161042	0.193929	0.101453
chr11	65425768	65425868	4805800	0	+	0.31	(0.28,0.32]	chr11	446554	31	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NEAT1	ENSG00000245532.10	ENST00000499732.3:ENST00000687132.1:ENST00000501122.2:ENST00000685861.1:ENST00000601801.3:ENST00000670617.1:ENST00000646243.1:ENST00000645023.1:ENST00000693290.1:ENST00000616315.2	lncRNA	lncRNA	lncRNA	lncRNA	97	674	2	1.0776	1.181965	1.28633	0.0392806	0.00973742	0.143072	0.0877296
chr2	47160379	47160478	1114721	0	-	0.383838	(0.378,0.408]	chr2	119536	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	CALM2	ENSG00000143933.20	ENST00000272298.12:ENST00000652974.1:ENST00000460218.5:ENST00000655450.1:ENST00000432899.5:ENST00000456319.6:ENST00000656538.1:ENST00000668667.1:ENST00000670593.1:ENST00000655728.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	24	135	2	1.14628	1.181945	1.21761	0.0475923	0.0389328	0.160836	0.153019
chr11	86067251	86067351	5014825	0	-	0.37	(0.35,0.378]	chr11	473022	353	INTRON	INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000630913.2:ENST00000528398.5:ENST00000356360.9:ENST00000534412.5:ENST00000531558.1:ENST00000531930.5:ENST00000532041.5:ENST00000525162.5:ENST00000528256.1:ENST00000528411.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	31	181	2	1.11825	1.180145	1.24204	0.0384067	0.0341676	0.146815	0.14223
chr11	65438550	65438649	4805928	0	+	0.373737	(0.35,0.378]	chr11	446554	159	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	30	162	2	0.924852	1.179546	1.43424	0.0631959	0.0302733	0.197297	0.129978
chr15	22576569	22576658	5975368	0	+	0.348315	(0.32,0.35]	chr15	568224	4	SS5_PROX	SS5_PROX:INTRON	HERC2P2	ENSG00000276550.5	ENST00000613386.4:ENST00000619021.4:ENST00000618651.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	26	164	2	1.15725	1.1790349999999998	1.20082	0.0616917	0.0300215	0.174039	0.142135
chr1	108930798	108930897	518825	0	-	0.515152	(0.476,0.515]	chr1	60853	7	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	CLCC1	ENSG00000121940.17	ENST00000690509.1:ENST00000687328.1:ENST00000685014.1:ENST00000685540.1:ENST00000686576.1:ENST00000688070.1:ENST00000691513.1:ENST00000686821.1:ENST00000692511.1:ENST00000689479.1:ENST00000687646.1:ENST00000687998.1:ENST00000687226.1:ENST00000693336.1:ENST00000689991.1:ENST00000687591.1:ENST00000691777.1:ENST00000690756.1:ENST00000688778.1:ENST00000685104.1:ENST00000689103.1:ENST00000687734.1:ENST00000686434.1:ENST00000685497.1:ENST00000691342.1:ENST00000686776.1:ENST00000692342.1:ENST00000689351.1:ENST00000692584.1:ENST00000692775.1:ENST00000687134.1:ENST00000690707.1:ENST00000687675.1:ENST00000688298.1:ENST00000675018.1:ENST00000690781.1:ENST00000691556.1:ENST00000689189.1:ENST00000687099.1:ENST00000685791.1:ENST00000687865.1:ENST00000687449.1:ENST00000688285.1:ENST00000686817.1:ENST00000369968.7:ENST00000674992.1:ENST00000675001.1:ENST00000369969.7:ENST00000356970.6:ENST00000692184.1:ENST00000482889.2:ENST00000473062.2:ENST00000369976.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	21	116	2	1.12226	1.177765	1.23327	0.0507667	0.0496305	0.175935	0.156383
chr22	41905950	41906047	7526756	0	+	0.494845	(0.476,0.515]	chr22	769481	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	SREBF2	ENSG00000198911.12	ENST00000612482.4:ENST00000361204.9:ENST00000424354.5:ENST00000491541.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	34	178	2	1.13807	1.1770649999999998	1.21606	0.0385515	0.0268385	0.142656	0.13513
chr1	108954672	108954772	519090	0	-	0.34	(0.32,0.35]	chr1	60927	2	SS3_PROX	SS3_PROX:INTRON	CLCC1	ENSG00000121940.17	ENST00000690509.1:ENST00000687328.1:ENST00000685014.1:ENST00000685540.1:ENST00000686576.1:ENST00000688070.1:ENST00000691513.1:ENST00000686821.1:ENST00000692511.1:ENST00000689479.1:ENST00000687646.1:ENST00000687998.1:ENST00000687226.1:ENST00000693336.1:ENST00000689991.1:ENST00000687591.1:ENST00000691777.1:ENST00000690756.1:ENST00000688778.1:ENST00000685104.1:ENST00000689103.1:ENST00000687734.1:ENST00000686434.1:ENST00000685497.1:ENST00000691342.1:ENST00000686776.1:ENST00000692342.1:ENST00000689351.1:ENST00000692584.1:ENST00000692775.1:ENST00000687134.1:ENST00000675018.1:ENST00000690781.1:ENST00000691556.1:ENST00000689189.1:ENST00000687099.1:ENST00000685791.1:ENST00000687865.1:ENST00000687449.1:ENST00000688285.1:ENST00000369968.7:ENST00000674992.1:ENST00000675001.1:ENST00000369969.7:ENST00000356970.6:ENST00000688610.1:ENST00000675128.1:ENST00000693089.1:ENST00000675571.1:ENST00000675650.1:ENST00000369970.8:ENST00000674561.2:ENST00000675654.1:ENST00000675790.1:ENST00000675584.1:ENST00000692795.1:ENST00000691731.1:ENST00000689359.1:ENST00000676392.2:ENST00000676391.2:ENST00000676454.1:ENST00000674849.1:ENST00000675956.1:ENST00000302500.5:ENST00000675508.1:ENST00000688168.1:ENST00000693673.1:ENST00000692404.1:ENST00000686078.1:ENST00000690874.1:ENST00000692732.1:ENST00000685628.1:ENST00000676306.1:ENST00000676059.2:ENST00000674527.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	18	111	2	1.10424	1.1747100000000001	1.24518	0.0754551	0.0546216	0.194427	0.182649
chr11	65502547	65502647	4806169	0	+	0.36	(0.35,0.378]	chr11	446569	50	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MALAT1	ENSG00000251562.9	ENST00000619449.2:ENST00000534336.1:ENST00000508832.2:ENST00000616527.4	lncRNA	lncRNA	lncRNA	lncRNA	2940	16620	2	1.01649	1.1736749999999998	1.33086	0.0177783	0.00621459	0.113427	0.0680321
chr12	124783102	124783199	5445758	0	-	0.371134	(0.35,0.378]	chr12	521219	4	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	SCARB1	ENSG00000073060.17	ENST00000339570.9:ENST00000261693.11:ENST00000679605.1:ENST00000681686.1:ENST00000680926.1:ENST00000680556.1:ENST00000680982.1:ENST00000680596.1:ENST00000681555.1:ENST00000681788.1:ENST00000415380.6:ENST00000681117.1:ENST00000681499.1:ENST00000545305.1:ENST00000538291.5:ENST00000546215.5:ENST00000535005.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	21	124	2	1.13471	1.1687750000000001	1.20284	0.0564772	0.0478552	0.170684	0.16701
chr17	27313258	27313357	6580737	0	+	0.323232	(0.32,0.35]	chr17	639649	10	UTR3	UTR3:EXON_MRNA	WSB1	ENSG00000109046.15	ENST00000467843.6:ENST00000262394.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	88	545	2	1.15279	1.1684999999999999	1.18421	0.0287983	0.0140925	0.127216	0.103168
chr9	131158083	131158183	4215960	0	+	0.54	(0.515,0.57]	chr9	386591	58	INTRON	INTRON	NUP214	ENSG00000126883.19	ENST00000695497.1:ENST00000695498.1:ENST00000695496.1:ENST00000695495.1:ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000651022.1:ENST00000525980.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	20	91	2	0.971026	1.167093	1.36316	0.0761358	0.0375126	0.195249	0.156054
chr11	70416217	70416315	4821799	0	+	0.438776	(0.408,0.44]	chr11	449628	1	INTRON	INTRON	CTTN	ENSG00000085733.16	ENST00000346329.7:ENST00000301843.13:ENST00000376561.7:ENST00000415461.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	22	118	2	1.0878	1.165875	1.24395	0.050853	0.0473375	0.176132	0.153014
chr6	34236872	34236961	2848104	0	+	0.617977	(0.57,1]	chr6	269042	1	UTR5	UTR5:EXON_MRNA	HMGA1	ENSG00000137309.20	ENST00000347617.10:ENST00000401473.7:ENST00000311487.9:ENST00000447654.5:ENST00000674029.1	protein_coding	protein_coding	protein_coding	protein_coding	48	129	2	1.01424	1.165545	1.31685	0.0315968	0.00964293	0.144381	0.0825661
chr7	129487311	129487410	3412109	0	+	0.444444	(0.44,0.476]	chr7	319005	16	UTR3	UTR3:EXON_MRNA	STRIP2	ENSG00000128578.10	ENST00000249344.7	protein_coding	protein_coding	protein_coding	protein_coding	25	136	2	1.08606	1.165375	1.24469	0.0511843	0.0352667	0.176696	0.137535
chr3	152312736	152312836	1535426	0	+	0.34	(0.32,0.35]	chr3	159996	104	INTRON	INTRON	MBNL1	ENSG00000152601.18	ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000495875.6:ENST00000324210.10:ENST00000493459.5:ENST00000459747.1:ENST00000460591.5:ENST00000545754.5:ENST00000357472.7:ENST00000324196.9:ENST00000498502.5:ENST00000463374.5:ENST00000485910.5:ENST00000465907.6:ENST00000492948.5:ENST00000485509.5:ENST00000464596.5	protein_coding	protein_coding	protein_coding	protein_coding	27	163	2	0.985772	1.164961	1.34415	0.0599466	0.0378772	0.190446	0.141255
chr16	22504452	22504551	6322650	0	+	0.515152	(0.476,0.515]	chr16	605439	123	INTRON	INTRON	NPIPB5	ENSG00000243716.11	ENST00000415654.5:ENST00000415833.6:ENST00000546168.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	24	129	2	1.02402	1.162455	1.30089	0.0590044	0.04054	0.167915	0.161534
chr11	62852282	62852381	4961853	0	-	0.50505	(0.476,0.515]	chr11	467079	4	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	SNHG1	ENSG00000255717.8	ENST00000689147.1:ENST00000686500.1:ENST00000665371.1:ENST00000687243.1:ENST00000537869.6:ENST00000686081.1:ENST00000686670.1:ENST00000690476.1:ENST00000688102.1:ENST00000691255.1:ENST00000539303.6:ENST00000538654.6:ENST00000540725.6:ENST00000658540.1:ENST00000685229.1:ENST00000686478.1:ENST00000686008.1:ENST00000692887.1:ENST00000691324.1:ENST00000692454.1:ENST00000685577.1:ENST00000693734.1:ENST00000537068.5:ENST00000537925.5:ENST00000541416.6:ENST00000541578.6:ENST00000537024.6:ENST00000686740.1:ENST00000663967.1:ENST00000670323.1:ENST00000668048.1:ENST00000660547.1:ENST00000689664.1:ENST00000690542.1:ENST00000539921.7:ENST00000687029.1:ENST00000661616.1:ENST00000670469.1:ENST00000664307.1:ENST00000665512.1:ENST00000656268.1:ENST00000535689.6:ENST00000663237.1:ENST00000544550.6:ENST00000660730.1:ENST00000660960.1:ENST00000662229.1:ENST00000670729.1:ENST00000655919.1:ENST00000671236.1:ENST00000667655.1:ENST00000653690.1:ENST00000661936.1:ENST00000544983.2:ENST00000535076.6:ENST00000656240.1:ENST00000539975.5:ENST00000656589.1:ENST00000545920.2:ENST00000537965.6:ENST00000670502.1:ENST00000662400.1:ENST00000663092.1:ENST00000656241.1:ENST00000652879.1:ENST00000668309.1:ENST00000545440.5:ENST00000542112.5:ENST00000541615.5	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	38	199	2	1.14215	1.16135	1.18055	0.0358536	0.0254578	0.138959	0.133676
chr6	31533599	31533698	3078752	0	-	0.474747	(0.44,0.476]	chr6	286739	8	EXON_MRNA	EXON_MRNA:INTRON	DDX39B	ENSG00000198563.14	ENST00000458640.5:ENST00000462256.5:ENST00000376177.6:ENST00000484566.5:ENST00000396172.6:ENST00000417023.5:ENST00000482195.5:ENST00000431908.5:ENST00000481456.1:ENST00000427214.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	30	158	2	0.968954	1.160457	1.35196	0.0595836	0.0237799	0.189982	0.118889
chr3	41239985	41240077	1403456	0	+	0.25	[0,0.28]	chr3	147483	8	UTR3	UTR3:EXON_MRNA:INTRON	CTNNB1	ENSG00000168036.18	ENST00000396185.8:ENST00000643031.1:ENST00000396183.7:ENST00000349496.11:ENST00000471014.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	56	455	2	1.10381	1.15865	1.21349	0.0356281	0.0336857	0.151629	0.134145
chr6	24719901	24719998	3070737	0	-	0.463918	(0.44,0.476]	chr6	285374	1	UTR5	UTR5:EXON_MRNA	C6orf62	ENSG00000112308.13	ENST00000378102.3	protein_coding	protein_coding	protein_coding	protein_coding	53	281	2	0.934317	1.1576485	1.38098	0.0560387	0.00890601	0.165741	0.0849778
chr5	138565338	138565436	2732803	0	-	0.428571	(0.408,0.44]	chr5	257456	32	INTRON	INTRON	HSPA9	ENSG00000113013.16	ENST00000677693.1:ENST00000677064.1:ENST00000678300.1:ENST00000677425.1:ENST00000649578.2:ENST00000677988.1:ENST00000297185.9:ENST00000677527.1:ENST00000678794.1:ENST00000677553.1:ENST00000678384.1:ENST00000678051.1:ENST00000677066.1:ENST00000649692.2:ENST00000678551.1:ENST00000501917.7:ENST00000524109.2:ENST00000507115.6:ENST00000507097.5:ENST00000504902.6:ENST00000508003.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	21	106	2	1.02422	1.157505	1.29079	0.0625053	0.0562638	0.184175	0.175709
chr11	65432159	65432259	4805864	0	+	0.38	(0.378,0.408]	chr11	446554	95	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2:ENST00000687943.1	lncRNA	lncRNA	lncRNA	lncRNA	108	594	2	1.07016	1.15652	1.24288	0.0298053	0.00846205	0.129138	0.0829385
chr14	101765861	101765960	5818536	0	+	0.494949	(0.476,0.515]	chr14	551818	7	UTR3	UTR3:EXON_MRNA:INTRON	PPP2R5C	ENSG00000078304.20	ENST00000694906.1:ENST00000422945.6:ENST00000554442.5:ENST00000556068.5:ENST00000556260.6:ENST00000328724.9:ENST00000554504.1:ENST00000553890.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	43	225	2	1.08775	1.155005	1.22226	0.0300031	0.0262558	0.142135	0.122221
chr19	11093395	11093494	7016852	0	+	0.40404	(0.378,0.408]	chr19	697422	21	INTRON	INTRON	LDLR	ENSG00000130164.14	ENST00000557933.5:ENST00000558518.6:ENST00000545707.5:ENST00000535915.5:ENST00000455727.6:ENST00000557958.1:ENST00000560502.5:ENST00000558013.5:ENST00000252444.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	23	131	2	1.10085	1.15482	1.20879	0.0556437	0.0435088	0.165463	0.162255
chr1	20744402	20744500	389425	0	-	0.346939	(0.32,0.35]	chr1	46510	43	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	HP1BP3	ENSG00000127483.19	ENST00000438032.6:ENST00000312239.10:ENST00000375003.6:ENST00000488722.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	85	534	2	0.983178	1.154324	1.32547	0.0489242	0.00812981	0.154906	0.0810802
chr1	1318122	1318214	359497	0	-	0.554348	(0.515,0.57]	chr1	41635	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	INTS11:ENSG00000240731	ENSG00000127054.22:ENSG00000240731.1	ENST00000540437.5:ENST00000545578.5:ENST00000620829.4:ENST00000435064.6:ENST00000323275.10:ENST00000411962.5:ENST00000419704.5:ENST00000458452.7:ENST00000421495.6:ENST00000532772.5:ENST00000450926.6:ENST00000527098.5:ENST00000528879.5:ENST00000531377.5:ENST00000434694.6:ENST00000488042.6:ENST00000526797.5:ENST00000526332.5:ENST00000430786.5:ENST00000527719.5:ENST00000530031.5:ENST00000526113.1:ENST00000526904.5:ENST00000525603.1:ENST00000444968.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA	30	136	2	1.04172	1.15404	1.26636	0.0538817	0.02086	0.164153	0.122348
chr17	22096903	22097003	6578632	0	+	0.31	(0.28,0.32]	chr17	639556	56	INTRON	INTRON	UBBP4	ENSG00000263563.7	ENST00000648259.1:ENST00000688301.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	32	218	2	1.1289	1.153855	1.17881	0.0587532	0.0302706	0.167915	0.143025
chr12	53479537	53479633	5143180	0	+	0.291667	(0.28,0.32]	chr12	485458	2	UTR3	UTR3:EXON_MRNA	PCBP2	ENSG00000197111.16	ENST00000546463.6:ENST00000437231.5:ENST00000447282.5:ENST00000359282.9:ENST00000549863.5:ENST00000359462.9:ENST00000552296.6:ENST00000552819.5:ENST00000455667.7:ENST00000439930.7:ENST00000548933.5:ENST00000562264.5:ENST00000550585.5:ENST00000547859.2:ENST00000547048.5:ENST00000550733.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	71	486	2	1.00608	1.152625	1.29917	0.055826	0.0108125	0.165463	0.0920575
chrX	71545626	71545725	7680073	0	+	0.414141	(0.408,0.44]	chrX	786401	11	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	OGT	ENSG00000147162.14	ENST00000373719.8:ENST00000488174.5:ENST00000373701.7:ENST00000498566.3:ENST00000455587.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	50	270	2	0.911437	1.1515435	1.39165	0.0760009	0.00620993	0.194909	0.0716844
chr5	131658486	131658586	2719344	0	-	0.54	(0.515,0.57]	chr5	255647	61	INTRON	INTRON	FNIP1	ENSG00000217128.13	ENST00000510461.6:ENST00000307954.12:ENST00000307968.11	protein_coding	protein_coding	protein_coding	protein_coding	35	159	2	1.07147	1.15004	1.22861	0.0386235	0.0237369	0.159761	0.118774
chr1	35180548	35180645	420468	0	-	0.298969	(0.28,0.32]	chr1	50646	27	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	SFPQ	ENSG00000116560.12	ENST00000470472.5:ENST00000460428.5:ENST00000468598.5:ENST00000485365.1:ENST00000490668.5	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	37	241	2	1.01594	1.149915	1.28389	0.0464897	0.0382463	0.166849	0.141795
chr20	62387102	62387136	7298881	0	+	0.676471	(0.57,1]	chr20	742553	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	RPS21	ENSG00000171858.18	ENST00000343986.9:ENST00000492356.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	45	114	2	0.84145	1.148435	1.45542	0.0606339	0.00773697	0.192213	0.0757402
chr7	26195058	26195154	3506172	0	-	0.375	(0.35,0.378]	chr7	327165	10	INTRON	INTRON	HNRNPA2B1	ENSG00000122566.22	ENST00000679318.1:ENST00000677339.1:ENST00000678501.1:ENST00000676903.1:ENST00000608362.2:ENST00000677631.1:ENST00000676749.1:ENST00000677574.1:ENST00000679123.1:ENST00000677906.1:ENST00000476233.2:ENST00000677669.1:ENST00000677321.1:ENST00000678277.1:ENST00000677571.1:ENST00000679124.1:ENST00000676932.1:ENST00000678973.1:ENST00000678183.1:ENST00000679021.1:ENST00000678035.1:ENST00000677075.1:ENST00000678075.1:ENST00000678631.1:ENST00000678998.1:ENST00000490912.6:ENST00000354667.8:ENST00000618183.5:ENST00000677839.1:ENST00000677037.1:ENST00000678449.1:ENST00000679001.1:ENST00000678962.1:ENST00000676524.1:ENST00000678935.1:ENST00000678675.1:ENST00000676746.1:ENST00000356674.8:ENST00000678431.1:ENST00000678697.1:ENST00000678779.1:ENST00000676497.1:ENST00000677396.1:ENST00000360787.8:ENST00000679243.1:ENST00000677656.1:ENST00000463181.5:ENST00000678884.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	80	462	2	0.901022	1.146871	1.39272	0.0586819	0.00648715	0.167915	0.0734175
chr1	22091914	22092014	42611	0	+	0.34	(0.32,0.35]	chr1	5130	5	UTR3	UTR3:EXON_MRNA	ENSG00000289694:CDC42	ENSG00000289694.1:ENSG00000070831.18	ENST00000695856.1:ENST00000344548.8:ENST00000400259.5:ENST00000667384.2:ENST00000411827.2:ENST00000695858.1:ENST00000695859.1:ENST00000656825.1:ENST00000695796.1:ENST00000695797.1:ENST00000662562.2:ENST00000695798.1:ENST00000695799.1:ENST00000695800.1:ENST00000695801.1:ENST00000695802.1:ENST00000695862.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	103	651	2	1.13504	1.1461649999999999	1.15729	0.0255598	0.0166728	0.120269	0.110511
chr19	15236996	15237094	7146414	0	-	0.489796	(0.476,0.515]	chr19	721841	16	UTR3	UTR3:EXON_MRNA	BRD4	ENSG00000141867.19	ENST00000679869.1:ENST00000263377.6	protein_coding	protein_coding	protein_coding	protein_coding	52	274	2	1.04682	1.1457350000000002	1.24465	0.0328805	0.019081	0.145164	0.108861
chr2	159761118	159761215	899978	0	+	0.505155	(0.476,0.515]	chr2	99564	14	INTRON	INTRON	MARCHF7	ENSG00000136536.15	ENST00000539065.5:ENST00000259050.8:ENST00000409175.6:ENST00000409591.5:ENST00000420397.1:ENST00000478396.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	21	112	2	1.07108	1.14557	1.22006	0.0626537	0.0452946	0.195956	0.149888
chr18	9109066	9109165	6868657	0	+	0.515152	(0.476,0.515]	chr18	680510	37	INTRON	INTRON	NDUFV2	ENSG00000178127.13	ENST00000577703.1:ENST00000318388.11:ENST00000583375.5:ENST00000400033.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	39	191	2	0.987773	1.1436365	1.2995	0.0417409	0.031228	0.161736	0.13151
chr19	5709150	5709247	7124599	0	-	0.536082	(0.515,0.57]	chr19	717144	3	INTRON	INTRON	LONP1	ENSG00000196365.12	ENST00000360614.8:ENST00000587552.5:ENST00000540670.6:ENST00000593119.5:ENST00000585374.5:ENST00000590558.5:ENST00000590729.5:ENST00000587365.1:ENST00000586617.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	21	95	2	1.13429	1.143555	1.15282	0.0529279	0.0488568	0.173561	0.161904
chr22	19943082	19943180	7477413	0	+	0.591837	(0.57,1]	chr22	762554	8	INTRON	INTRON	COMT	ENSG00000093010.15	ENST00000676678.1:ENST00000403184.5:ENST00000361682.11:ENST00000403710.5:ENST00000407537.5:ENST00000467943.5:ENST00000678868.1:ENST00000678769.1:ENST00000428707.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	21	56	2	0.981099	1.1413445	1.30159	0.0694448	0.0400049	0.184298	0.161534
chr1	202944982	202945075	621306	0	-	0.473118	(0.44,0.476]	chr1	73792	1	CDS	CDS:EXON_MRNA:INTRON	ADIPOR1	ENSG00000159346.13	ENST00000340990.10:ENST00000367254.7:ENST00000417068.5:ENST00000426229.1	protein_coding	protein_coding	protein_coding	protein_coding	19	100	2	1.11013	1.13901	1.16789	0.0787241	0.0450599	0.198576	0.163337
chr3	157155747	157155845	1844658	0	-	0.346939	(0.32,0.35]	chr3	185659	12	INTRON	INTRON	CCNL1	ENSG00000163660.12	ENST00000461804.5:ENST00000295926.8:ENST00000631619.1:ENST00000475298.5:ENST00000470121.5:ENST00000476367.5:ENST00000477127.5:ENST00000478454.5:ENST00000479596.5:ENST00000465947.5:ENST00000467081.1:ENST00000464575.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	27	160	2	0.96941600000000006	1.137483	1.30555	0.0633805	0.0428733	0.197851	0.148082
chr6	31755310	31755409	2843648	0	+	0.252525	[0,0.28]	chr6	267818	13	INTRON	INTRON	MSH5:MSH5-SAPCD1	ENSG00000204410.16:ENSG00000255152.8	ENST00000375755.8:ENST00000375750.9:ENST00000650702.1:ENST00000493662.6:ENST00000375703.7:ENST00000375740.7:ENST00000423982.6:ENST00000463144.5:ENST00000450148.5:ENST00000468602.5:ENST00000468136.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	46	365	2	0.997447	1.1363735	1.2753	0.0691924	0.0229359	0.184298	0.125974
chr11	65504531	65504631	4806189	0	+	0.38	(0.378,0.408]	chr11	446569	70	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MALAT1	ENSG00000251562.9	ENST00000619449.2:ENST00000534336.1:ENST00000612781.1:ENST00000618132.1:ENST00000613376.1:ENST00000610851.1	lncRNA	lncRNA	lncRNA	lncRNA	3730	19939	2	1.08464	1.1357300000000001	1.18682	0.017953	0.00671322	0.10667	0.0738715
chr7	139368992	139369092	3437679	0	+	0.34	(0.32,0.35]	chr7	320318	83	INTRON	INTRON	LUC7L2:FMC1-LUC7L2	ENSG00000146963.18:ENSG00000269955.2	ENST00000541170.7:ENST00000541515.3:ENST00000608368.5:ENST00000619796.4:ENST00000354926.9:ENST00000435096.1:ENST00000456182.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	40	242	2	1.10244	1.135375	1.16831	0.0567697	0.023234	0.167723	0.127397
chr1	20743712	20743811	389418	0	-	0.454545	(0.44,0.476]	chr1	46510	36	UTR3	UTR3:EXON_MRNA:INTRON	HP1BP3	ENSG00000127483.19	ENST00000438032.6:ENST00000312239.10:ENST00000375003.6:ENST00000488722.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	46	242	2	1.13452	1.13471	1.1349	0.0321899	0.0252558	0.133676	0.132532
chr1	20776005	20776103	389752	0	-	0.214286	[0,0.28]	chr1	46565	1	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HP1BP3	ENSG00000127483.19	ENST00000438032.6:ENST00000312239.10:ENST00000419948.5:ENST00000424732.5:ENST00000417710.5:ENST00000487117.1:ENST00000375000.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	41	303	2	0.983019	1.1346695	1.28632	0.0548952	0.0410166	0.183387	0.1451
chr16	85574744	85574844	6415579	0	+	0.64	(0.57,1]	chr16	615470	180	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	19	51	2	1.09783	1.1333600000000001	1.16889	0.0678042	0.0483349	0.184298	0.172077
chr10	101811480	101811576	4680906	0	-	0.489583	(0.476,0.515]	chr10	432012	8	INTRON	INTRON	OGA	ENSG00000198408.14	ENST00000439817.5:ENST00000361464.8:ENST00000357797.9:ENST00000370094.7:ENST00000429860.1	protein_coding	protein_coding	protein_coding	protein_coding	52	253	2	0.902506	1.132953	1.3634	0.0510066	0.0165645	0.176593	0.102621
chr7	76329476	76329576	3562246	0	-	0.6	(0.57,1]	chr7	331937	28	UTR3	UTR3:EXON_MRNA	YWHAG	ENSG00000170027.7	ENST00000307630.5	protein_coding	protein_coding	protein_coding	protein_coding	36	94	2	0.916064	1.132347	1.34863	0.0563775	0.0146494	0.166721	0.106384
chr22	38490756	38490856	7587926	0	-	0.47	(0.44,0.476]	chr22	776723	14	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	DDX17	ENSG00000100201.23	ENST00000403230.3:ENST00000396821.8:ENST00000216019.11:ENST00000475004.6:ENST00000432525.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	44	225	2	0.887769	1.1313295	1.37489	0.0620387	0.0151699	0.194151	0.0994339
chr1	155314168	155314267	229213	0	+	0.343434	(0.32,0.35]	chr1	26854	13	INTRON	INTRON	FDPS	ENSG00000160752.15	ENST00000611010.4:ENST00000468479.5:ENST00000447866.5:ENST00000461507.5:ENST00000474345.5:ENST00000471117.5:ENST00000368356.9:ENST00000467076.5:ENST00000495308.5:ENST00000491013.5:ENST00000356657.10:ENST00000465559.5:ENST00000470171.5:ENST00000612683.1:ENST00000489003.5:ENST00000477057.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	45	279	2	0.939242	1.131136	1.32303	0.0733764	0.013074	0.190105	0.0996221
chr1	244854350	244854449	672989	0	-	0.333333	(0.32,0.35]	chr1	79601	42	UTR3	UTR3:EXON_MRNA:INTRON	HNRNPU	ENSG00000153187.20	ENST00000475997.6:ENST00000366527.4:ENST00000649899.1:ENST00000638230.1:ENST00000640306.1:ENST00000489705.2:ENST00000640264.1:ENST00000444376.7:ENST00000640218.2:ENST00000639628.2:ENST00000440865.2:ENST00000638952.1:ENST00000638716.1:ENST00000366525.8:ENST00000639880.1:ENST00000283179.14:ENST00000638475.1:ENST00000639824.1:ENST00000468690.2:ENST00000476241.2:ENST00000640001.1:ENST00000640056.1:ENST00000639064.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	52	322	2	0.92954	1.1305	1.33146	0.0681739	0.0121297	0.184298	0.0963795
chr3	186789358	186789448	1586160	0	+	0.4	(0.378,0.408]	chr3	164303	2	UTR3	UTR3:EXON_MRNA	EIF4A2	ENSG00000156976.17	ENST00000426808.5:ENST00000323963.10:ENST00000440191.6:ENST00000425053.5:ENST00000485101.5:ENST00000443963.5:ENST00000496382.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	35	187	2	1.11861	1.1298650000000001	1.14112	0.0525069	0.026801	0.160709	0.134947
chr7	26194674	26194770	3506168	0	-	0.354167	(0.35,0.378]	chr7	327165	6	INTRON	INTRON	HNRNPA2B1	ENSG00000122566.22	ENST00000679318.1:ENST00000677339.1:ENST00000678501.1:ENST00000676903.1:ENST00000608362.2:ENST00000677631.1:ENST00000676749.1:ENST00000677574.1:ENST00000679123.1:ENST00000677906.1:ENST00000476233.2:ENST00000677669.1:ENST00000677321.1:ENST00000678277.1:ENST00000677571.1:ENST00000679124.1:ENST00000676932.1:ENST00000678973.1:ENST00000678183.1:ENST00000679021.1:ENST00000678035.1:ENST00000677075.1:ENST00000678075.1:ENST00000678631.1:ENST00000678998.1:ENST00000490912.6:ENST00000354667.8:ENST00000618183.5:ENST00000677839.1:ENST00000677037.1:ENST00000678449.1:ENST00000679001.1:ENST00000678962.1:ENST00000676524.1:ENST00000678935.1:ENST00000678675.1:ENST00000676746.1:ENST00000356674.8:ENST00000678431.1:ENST00000678697.1:ENST00000678779.1:ENST00000676497.1:ENST00000677396.1:ENST00000360787.8:ENST00000679243.1:ENST00000677656.1:ENST00000463181.5:ENST00000678884.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	86	494	2	0.97418	1.12881	1.28344	0.0352717	0.0142749	0.15034	0.0963703
chr4	82369628	82369728	2177495	0	-	0.39	(0.378,0.408]	chr4	214146	96	INTRON	INTRON	HNRNPD	ENSG00000138668.19	ENST00000313899.12:ENST00000353341.8:ENST00000352301.8:ENST00000513584.1:ENST00000509263.5:ENST00000507010.5:ENST00000515432.1:ENST00000503822.1:ENST00000509107.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	23	124	2	1.1099	1.12809	1.14628	0.072771	0.0389328	0.188931	0.160836
chr10	101785685	101785780	4680628	0	-	0.326316	(0.32,0.35]	chr10	431933	14	UTR3	UTR3:EXON_MRNA	OGA	ENSG00000198408.14	ENST00000439817.5:ENST00000361464.8	protein_coding	protein_coding	protein_coding	protein_coding	27	165	2	1.11994	1.12777	1.1356	0.0610811	0.0406532	0.172424	0.161534
chr2	177222272	177222371	926018	0	+	0.333333	(0.32,0.35]	chr2	101764	31	UTR3	UTR3:EXON_MRNA	HNRNPA3	ENSG00000170144.21	ENST00000679159.1:ENST00000678111.1:ENST00000678421.1:ENST00000677863.1:ENST00000676681.1:ENST00000676629.1:ENST00000677337.1:ENST00000676488.1:ENST00000677043.1:ENST00000676874.1:ENST00000676762.1:ENST00000411529.6:ENST00000676736.1:ENST00000483137.2:ENST00000677508.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	28	172	2	1.08628	1.126555	1.16683	0.0518316	0.0459039	0.164984	0.159306
chr17	59840399	59840497	6643739	0	+	0.387755	(0.378,0.408]	chr17	648787	6	UTR3	UTR3:EXON_MRNA	VMP1	ENSG00000062716.13	ENST00000262291.9:ENST00000592790.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	26	142	2	1.10365	1.122155	1.14066	0.0520941	0.0454847	0.164236	0.159717
chr1	35180355	35180451	420466	0	-	0.395833	(0.378,0.408]	chr1	50646	25	EXON_LNCRNA	EXON_LNCRNA:INTRON	SFPQ	ENSG00000116560.12	ENST00000470472.5:ENST00000460428.5:ENST00000468598.5:ENST00000485365.1:ENST00000490668.5	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	63	319	2	0.870698	1.120724	1.37075	0.0539776	0.0142215	0.181553	0.0961012
chr12	22686824	22686923	5095376	0	+	0.232323	[0,0.28]	chr12	481289	20	UTR3	UTR3:EXON_MRNA	ETNK1	ENSG00000139163.16	ENST00000266517.9	protein_coding	protein_coding	protein_coding	protein_coding	39	301	2	1.10671	1.118245	1.12978	0.060182	0.0370931	0.170184	0.155878
chr1	160221510	160221610	571187	0	-	0.39	(0.378,0.408]	chr1	69121	3	SS3_PROX	SS3_PROX:INTRON	DCAF8	ENSG00000132716.19	ENST00000326837.6:ENST00000368073.7:ENST00000368074.6:ENST00000477163.1:ENST00000461888.5:ENST00000490368.5:ENST00000466253.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	28	149	2	1.0679	1.1170550000000001	1.16621	0.0515982	0.0439899	0.162255	0.159041
chr11	65432858	65432958	4805871	0	+	0.38	(0.378,0.408]	chr11	446554	102	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2:ENST00000687943.1	lncRNA	lncRNA	lncRNA	lncRNA	92	477	2	0.969031	1.1164455	1.26386	0.0318454	0.0156056	0.14477	0.10128
chr1	1316355	1316454	359477	0	-	0.484848	(0.476,0.515]	chr1	41630	3	EXON_LNCRNA	EXON_LNCRNA:INTRON	INTS11	ENSG00000127054.22	ENST00000540437.5:ENST00000545578.5:ENST00000620829.4:ENST00000435064.6:ENST00000323275.10:ENST00000411962.5:ENST00000462432.5:ENST00000419704.5:ENST00000458452.7:ENST00000421495.6:ENST00000532772.5:ENST00000450926.6:ENST00000527098.5:ENST00000528879.5:ENST00000531377.5:ENST00000434694.6:ENST00000488042.6:ENST00000526797.5:ENST00000526332.5:ENST00000430786.5:ENST00000527719.5:ENST00000530031.5:ENST00000526113.1:ENST00000526904.5:ENST00000525603.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	22	111	2	1.06133	1.114635	1.16794	0.0661327	0.0525088	0.181924	0.178179
chr1	204555042	204555141	297819	0	+	0.454545	(0.44,0.476]	chr1	34331	55	UTR3	UTR3:EXON_MRNA	MDM4	ENSG00000198625.14	ENST00000367183.7:ENST00000391947.6:ENST00000454264.6:ENST00000612738.4:ENST00000614459.4:ENST00000616250.4:ENST00000367182.8	protein_coding	protein_coding	protein_coding	protein_coding	20	104	2	1.08492	1.11393	1.14294	0.0644337	0.059723	0.189982	0.178924
chr11	65431660	65431759	4805859	0	+	0.323232	(0.32,0.35]	chr11	446554	90	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	41	246	2	1.09119	1.111405	1.13162	0.0538337	0.0277813	0.16408	0.137011
chr3	42646270	42646369	1406451	0	+	0.363636	(0.35,0.378]	chr3	147732	4	UTR3	UTR3:EXON_MRNA	NKTR	ENSG00000114857.19	ENST00000429888.5:ENST00000232978.13	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	23	126	2	0.995846	1.110568	1.22529	0.0638283	0.0588498	0.19913	0.167915
chr14	23324961	23325056	5656994	0	+	0.463158	(0.44,0.476]	chr14	539473	8	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	BCL2L2-PABPN1:PABPN1	ENSG00000258643.6:ENSG00000100836.11	ENST00000678502.1:ENST00000553781.5:ENST00000557008.2:ENST00000216727.9:ENST00000397276.6:ENST00000556821.5:ENST00000555295.1	protein_coding	protein_coding	protein_coding	protein_coding	42	218	2	1.10349	1.10678	1.11007	0.0365153	0.0319124	0.14477	0.138959
chr1	207045936	207046035	624896	0	-	0.363636	(0.35,0.378]	chr1	74431	22	UTR3	UTR3:EXON_MRNA	YOD1	ENSG00000180667.11	ENST00000367084.1:ENST00000315927.9	protein_coding	protein_coding	protein_coding	protein_coding	24	135	2	1.09932	1.106605	1.11389	0.070484	0.0448414	0.1845	0.163255
chr11	65423471	65423571	4805777	0	+	0.63	(0.57,1]	chr11	446554	8	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NEAT1	ENSG00000245532.10	ENST00000499732.3:ENST00000687132.1:ENST00000501122.2:ENST00000685861.1:ENST00000601801.3:ENST00000612303.2:ENST00000670617.1:ENST00000646243.1:ENST00000645023.1:ENST00000642367.1	lncRNA	lncRNA	lncRNA	lncRNA	285	726	2	1.07608	1.10508	1.13408	0.0076524	0.00649719	0.077906	0.0699952
chr11	118751407	118751505	5045955	0	-	0.397959	(0.378,0.408]	chr11	475731	38	UTR3	UTR3:EXON_MRNA	DDX6	ENSG00000110367.14	ENST00000534980.7:ENST00000620157.4:ENST00000529162.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	41	218	2	0.904834	1.1029470000000001	1.30106	0.0630053	0.0217523	0.196853	0.11491
chr1	35185186	35185280	420517	0	-	0.404255	(0.378,0.408]	chr1	50656	2	INTRON	INTRON	SFPQ	ENSG00000116560.12	ENST00000470472.5:ENST00000460428.5:ENST00000696553.1:ENST00000357214.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	48	257	2	0.946625	1.1001875	1.25375	0.0631127	0.0152664	0.176946	0.108569
chr18	9112653	9112753	6868693	0	+	0.51	(0.476,0.515]	chr18	680510	73	INTRON	INTRON	NDUFV2	ENSG00000178127.13	ENST00000577703.1:ENST00000318388.11:ENST00000583375.5:ENST00000400033.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	28	136	2	0.970619	1.0966595	1.2227	0.0572611	0.0498173	0.186866	0.156383
chr8	38111529	38111627	3734732	0	+	0.510204	(0.476,0.515]	chr8	346969	3	INTRON	INTRON	ASH2L	ENSG00000129691.16	ENST00000545394.2:ENST00000343823.11:ENST00000517496.5:ENST00000428278.6:ENST00000521652.5:ENST00000524263.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	22	113	2	1.0629	1.09491	1.12692	0.0688801	0.0520486	0.184298	0.176923
chr4	82373678	82373756	2177538	0	-	0.628205	(0.57,1]	chr4	214160	1	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HNRNPD	ENSG00000138668.19	ENST00000313899.12:ENST00000353341.8:ENST00000352301.8:ENST00000513584.1:ENST00000507010.5:ENST00000515432.1:ENST00000503822.1:ENST00000509107.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	50	129	2	1.04388	1.094895	1.14591	0.027802	0.020107	0.123904	0.121243
chr4	68599	68699	1905444	0	+	0.24	[0,0.28]	chr4	191008	2	INTRON	INTRON	ZNF595	ENSG00000272602.6	ENST00000608255.2:ENST00000609518.5:ENST00000610261.6	protein_coding	protein_coding	protein_coding	protein_coding	34	262	2	1.03906	1.0946600000000002	1.15026	0.0733163	0.0408222	0.190051	0.161534
chr8	141421955	141422050	3878683	0	+	0.463158	(0.44,0.476]	chr8	356216	7	UTR5	UTR5:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PTP4A3	ENSG00000184489.13	ENST00000520105.5:ENST00000521578.6:ENST00000523147.5:ENST00000329397.6:ENST00000349124.3:ENST00000680615.1:ENST00000681443.1:ENST00000524028.1	protein_coding	protein_coding	protein_coding	protein_coding	46	235	2	0.968632	1.094551	1.22047	0.0575932	0.0179983	0.167723	0.114436
chr19	17859909	17859956	7031829	0	+	0.659574	(0.57,1]	chr19	700521	1	UTR5	UTR5:EXON_MRNA	RPL18A	ENSG00000105640.13	ENST00000222247.10:ENST00000600147.5:ENST00000599898.5:ENST00000602216.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	54	133	2	0.934085	1.0931275	1.25217	0.036161	0.0162289	0.152677	0.101453
chr2	96881182	96881282	1182036	0	-	0.5	(0.476,0.515]	chr2	126720	23	INTRON	INTRON	FAM178B	ENSG00000168754.15	ENST00000393526.6:ENST00000490605.3:ENST00000470789.5:ENST00000494172.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	38	194	2	1.03317	1.091975	1.15078	0.0492569	0.0301936	0.155752	0.142735
chr11	65437252	65437351	4805915	0	+	0.333333	(0.32,0.35]	chr11	446554	146	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	92	553	2	0.895015	1.0914325	1.28785	0.0668536	0.00888432	0.183051	0.0849778
chr4	55408920	55409020	1960720	0	+	0.38	(0.378,0.408]	chr4	196553	52	INTRON	INTRON	TMEM165	ENSG00000134851.13	ENST00000381334.10:ENST00000506198.5:ENST00000508404.5:ENST00000511710.1:ENST00000502797.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	31	158	2	1.05027	1.0900349999999999	1.1298	0.0627635	0.0399784	0.176136	0.161534
chr20	35739644	35739742	7336533	0	-	0.316327	(0.28,0.32]	chr20	747503	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	RBM39	ENSG00000131051.24	ENST00000253363.11:ENST00000639702.1:ENST00000656873.1:ENST00000463004.5:ENST00000361162.10:ENST00000403542.6:ENST00000338163.10:ENST00000528062.7:ENST00000429968.5:ENST00000444878.5:ENST00000665058.1:ENST00000374038.7:ENST00000412738.5:ENST00000434927.5:ENST00000425184.5:ENST00000455343.5:ENST00000416108.5:ENST00000426951.5:ENST00000442447.5:ENST00000449489.5:ENST00000433027.5:ENST00000453310.5:ENST00000416529.5:ENST00000397370.3:ENST00000463098.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	38	245	2	1.0515	1.08875	1.126	0.0706561	0.031465	0.184528	0.144381
chr19	58555899	58555993	7218478	0	-	0.521277	(0.515,0.57]	chr19	733396	3	UTR3	UTR3:EXON_MRNA	UBE2M	ENSG00000130725.8	ENST00000253023.8	protein_coding	protein_coding	protein_coding	protein_coding	39	167	2	1.04785	1.0882800000000001	1.12871	0.0359316	0.0353117	0.152322	0.137535
chr3	157154477	157154571	1844645	0	-	0.351064	(0.35,0.378]	chr3	185658	15	EXON_MRNA	EXON_MRNA:INTRON	CCNL1	ENSG00000163660.12	ENST00000461804.5:ENST00000295926.8:ENST00000464316.5:ENST00000631619.1:ENST00000475298.5:ENST00000470121.5:ENST00000476367.5:ENST00000477127.5:ENST00000478454.5:ENST00000479596.5:ENST00000465947.5:ENST00000467081.1:ENST00000464575.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	33	183	2	1.04041	1.08683	1.13325	0.0658722	0.0322215	0.181613	0.145026
chr12	56342492	56342591	5334677	0	-	0.525253	(0.515,0.57]	chr12	509746	10	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	STAT2	ENSG00000170581.14	ENST00000314128.9:ENST00000556539.5:ENST00000651301.1:ENST00000651915.1:ENST00000651934.1:ENST00000652091.1:ENST00000651805.1:ENST00000651078.1:ENST00000650805.1:ENST00000652741.1:ENST00000652624.1:ENST00000556140.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	24	104	2	1.03279	1.08324	1.13369	0.066536	0.0448048	0.182714	0.163255
chr16	21445683	21445782	6460772	0	-	0.353535	(0.35,0.378]	chr16	623226	51	INTRON	INTRON	NPIPB3	ENSG00000169246.16	ENST00000545358.5:ENST00000543368.1:ENST00000544154.1	protein_coding	retained_intron	protein_coding	retained_intron:processed_transcript	34	192	2	1.0654	1.083005	1.10061	0.0474455	0.0455211	0.164236	0.153019
chr1	207760009	207760105	304981	0	+	0.510417	(0.476,0.515]	chr1	35099	4	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	CD46	ENSG00000117335.21	ENST00000695779.1:ENST00000695777.1:ENST00000695778.1:ENST00000496723.2:ENST00000695782.1:ENST00000695781.1:ENST00000695780.1:ENST00000636114.2:ENST00000367042.6:ENST00000322875.8:ENST00000322918.9:ENST00000354848.5:ENST00000357714.5:ENST00000358170.6:ENST00000367041.5:ENST00000367047.5:ENST00000695783.1:ENST00000695784.1:ENST00000469535.5:ENST00000360212.6:ENST00000480003.5:ENST00000695785.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	56	281	2	0.875426	1.079258	1.28309	0.0700666	0.0118326	0.184298	0.0962115
chr7	44796724	44796793	3315591	0	+	0.623188	(0.57,1]	chr7	308116	1	CDS_START	CDS_START:CDS:UTR5:EXON_MRNA	PPIA	ENSG00000196262.15	ENST00000451562.5:ENST00000481437.5:ENST00000479021.1:ENST00000468812.6:ENST00000676977.1:ENST00000677107.1:ENST00000355968.10:ENST00000489459.5:ENST00000415933.5:ENST00000620047.5:ENST00000678643.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	29	74	2	0.890823	1.0788465	1.26687	0.0791872	0.0235236	0.199574	0.128745
chr19	1037900	1037997	6993287	0	+	0.453608	(0.44,0.476]	chr19	692537	1	UTR3	UTR3:EXON_MRNA	CNN2	ENSG00000064666.15	ENST00000263097.9:ENST00000348419.7:ENST00000565096.6:ENST00000562958.6:ENST00000568865.3:ENST00000564572.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	59	304	2	0.97749	1.072415	1.16734	0.0432273	0.0226986	0.162255	0.117618
chr1	28508996	28509087	57203	0	+	0.538462	(0.515,0.57]	chr1	7388	2	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	RCC1:SNHG3	ENSG00000180198.17:ENSG00000242125.3	ENST00000398958.6:ENST00000649185.1:ENST00000413987.1:ENST00000427469.5:ENST00000683442.1:ENST00000434290.6:ENST00000373833.10:ENST00000437681.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	50	217	2	1.05969	1.0683500000000001	1.07701	0.0345078	0.030606	0.148027	0.131231
chr1	93123271	93123370	162992	0	+	0.474747	(0.44,0.476]	chr1	17612	20	INTRON	INTRON	MTF2	ENSG00000143033.18	ENST00000540243.5:ENST00000545708.5:ENST00000370298.9:ENST00000471953.5:ENST00000370303.4:ENST00000467953.5:ENST00000497976.5:ENST00000476037.5:ENST00000487263.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	29	144	2	1.046	1.06678	1.08756	0.0683813	0.0403651	0.184298	0.161534
chr20	35733785	35733885	7336467	0	-	0.37	(0.35,0.378]	chr20	747477	2	SS5_PROX	SS5_PROX:INTRON	RBM39	ENSG00000131051.24	ENST00000253363.11:ENST00000639702.1:ENST00000656873.1:ENST00000463004.5:ENST00000361162.10:ENST00000461283.5:ENST00000403542.6:ENST00000338163.10:ENST00000528062.7:ENST00000429968.5:ENST00000444878.5:ENST00000665058.1:ENST00000374038.7:ENST00000412738.5:ENST00000434927.5:ENST00000425184.5:ENST00000481037.5:ENST00000455343.5:ENST00000416108.5:ENST00000426951.5:ENST00000477334.1:ENST00000442447.5:ENST00000449489.5:ENST00000433027.5:ENST00000487604.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	42	227	2	0.96166	1.057985	1.15431	0.0772835	0.0231971	0.196285	0.127196
chr3	196933029	196933128	1597106	0	+	0.535354	(0.515,0.57]	chr3	165450	12	UTR3	UTR3:EXON_MRNA	SENP5	ENSG00000119231.11	ENST00000323460.10	protein_coding	protein_coding	protein_coding	protein_coding	56	233	2	0.817522	1.057571	1.29762	0.0732346	0.0118276	0.18988	0.0962115
chr7	155309543	155309642	3451884	0	+	0.353535	(0.35,0.378]	chr7	322637	13	UTR3	UTR3:EXON_MRNA	INSIG1	ENSG00000186480.13	ENST00000344756.8:ENST00000340368.9	protein_coding	protein_coding	protein_coding	protein_coding	39	219	2	1.01882	1.0561099999999999	1.0934	0.0516119	0.042468	0.176696	0.148082
chr17	76564091	76564188	6677404	0	+	0.381443	(0.378,0.408]	chr17	652151	11	EXON_LNCRNA	EXON_LNCRNA	SNHG16	ENSG00000163597.16	ENST00000661348.2:ENST00000670737.2:ENST00000653677.2:ENST00000493536.7:ENST00000667091.1:ENST00000586846.2:ENST00000448136.5:ENST00000668511.1:ENST00000590435.5:ENST00000587838.2	lncRNA	lncRNA	lncRNA	lncRNA	66	343	2	0.927159	1.0539545	1.18075	0.0467784	0.0233816	0.167716	0.11839
chr6	31533009	31533107	3078746	0	-	0.44898	(0.44,0.476]	chr6	286739	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	DDX39B	ENSG00000198563.14	ENST00000458640.5:ENST00000462256.5:ENST00000376177.6:ENST00000484566.5:ENST00000396172.6:ENST00000417023.5:ENST00000482195.5:ENST00000431908.5:ENST00000481456.1:ENST00000427214.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	59	294	2	1.00797	1.04976	1.09155	0.0367008	0.0320715	0.154543	0.132055
chr13	110904186	110904264	5650538	0	-	0.410256	(0.408,0.44]	chr13	538374	3	EXON_LNCRNA	EXON_LNCRNA:INTRON	ANKRD10	ENSG00000088448.14	ENST00000267339.6:ENST00000489973.6:ENST00000310847.8:ENST00000465753.1:ENST00000494859.5:ENST00000464579.1:ENST00000463156.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	60	287	2	0.890014	1.042567	1.19512	0.0519059	0.0258497	0.176696	0.121322
chr22	20952088	20952186	7480866	0	+	0.5	(0.476,0.515]	chr22	763101	24	UTR3	UTR3:EXON_MRNA:INTRON	CRKL	ENSG00000099942.13	ENST00000354336.8:ENST00000411769.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	45	219	2	0.965247	1.0389735	1.1127	0.0623563	0.0270329	0.175357	0.135781
chr1	1317051	1317151	359484	0	-	0.52	(0.515,0.57]	chr1	41630	10	EXON_LNCRNA	EXON_LNCRNA:INTRON	INTS11	ENSG00000127054.22	ENST00000540437.5:ENST00000545578.5:ENST00000620829.4:ENST00000435064.6:ENST00000323275.10:ENST00000411962.5:ENST00000462432.5:ENST00000419704.5:ENST00000458452.7:ENST00000421495.6:ENST00000532772.5:ENST00000450926.6:ENST00000527098.5:ENST00000528879.5:ENST00000531377.5:ENST00000434694.6:ENST00000488042.6:ENST00000526797.5:ENST00000526332.5:ENST00000430786.5:ENST00000527719.5:ENST00000530031.5:ENST00000526113.1:ENST00000526904.5:ENST00000525603.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	44	175	2	0.875627	1.0370635	1.1985	0.0589165	0.0302018	0.189982	0.129682
chr7	26200313	26200399	3506237	0	-	0.662791	(0.57,1]	chr7	327193	3	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	HNRNPA2B1	ENSG00000122566.22	ENST00000679318.1:ENST00000677339.1:ENST00000678501.1:ENST00000676903.1:ENST00000608362.2:ENST00000677631.1:ENST00000676749.1:ENST00000677574.1:ENST00000679123.1:ENST00000677906.1:ENST00000476233.2:ENST00000677669.1:ENST00000677321.1:ENST00000678277.1:ENST00000677571.1:ENST00000679124.1:ENST00000676932.1:ENST00000678973.1:ENST00000678183.1:ENST00000679021.1:ENST00000678631.1:ENST00000678998.1:ENST00000490912.6:ENST00000354667.8:ENST00000618183.5:ENST00000677839.1:ENST00000677037.1:ENST00000678449.1:ENST00000679001.1:ENST00000678962.1:ENST00000676524.1:ENST00000678935.1:ENST00000678675.1:ENST00000676746.1:ENST00000356674.8:ENST00000678431.1:ENST00000678697.1:ENST00000678779.1:ENST00000676497.1:ENST00000677396.1:ENST00000360787.8:ENST00000679243.1:ENST00000677656.1:ENST00000463181.5:ENST00000678884.1:ENST00000495810.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	60	152	2	0.894006	1.0349329999999999	1.17586	0.0527958	0.0120799	0.178846	0.0907281
chr2	61537759	61537859	1131231	0	-	0.61	(0.57,1]	chr2	121653	3	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	XPO1	ENSG00000082898.19	ENST00000676553.1:ENST00000677556.1:ENST00000677814.1:ENST00000676771.1:ENST00000677803.1:ENST00000677239.1:ENST00000678790.1:ENST00000677928.1:ENST00000678182.1:ENST00000677150.1:ENST00000678172.1:ENST00000678360.1:ENST00000678081.1:ENST00000676889.1:ENST00000676783.1:ENST00000401558.7:ENST00000428210.5:ENST00000677290.1:ENST00000677850.1:ENST00000676789.1:ENST00000678741.1:ENST00000406957.5:ENST00000443240.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	108	262	2	1.0287	1.031675	1.03465	0.0200753	0.0153327	0.109835	0.108569
chr12	56663815	56663910	5335825	0	-	0.378947	(0.378,0.408]	chr12	510153	6	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	PTGES3	ENSG00000110958.16	ENST00000537473.2:ENST00000614328.4:ENST00000262033.11:ENST00000414274.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	51	257	2	0.98545	1.02113	1.05681	0.0565158	0.0319137	0.167123	0.14477
chr11	65437451	65437551	4805917	0	+	0.39	(0.378,0.408]	chr11	446554	148	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	37	186	2	1.00652	1.020815	1.03511	0.0652342	0.0423762	0.180071	0.161744
chrX	73843832	73843932	7837962	0	-	0.39	(0.378,0.408]	chrX	799611	65	EXON_LNCRNA	EXON_LNCRNA:INTRON	XIST	ENSG00000229807.13	ENST00000650627.1:ENST00000434839.3:ENST00000429829.6:ENST00000650366.1:ENST00000648607.1:ENST00000650186.1:ENST00000635841.2:ENST00000650637.1:ENST00000648970.1:ENST00000648991.1:ENST00000666309.1	lncRNA	lncRNA	lncRNA	lncRNA	60	302	2	0.970247	1.0108234999999999	1.0514	0.0530828	0.0306055	0.162335	0.143385
chr13	110902581	110902680	5650521	0	-	0.363636	(0.35,0.378]	chr13	538370	15	INTRON	INTRON	ANKRD10	ENSG00000088448.14	ENST00000267339.6:ENST00000489973.6:ENST00000310847.8:ENST00000465753.1:ENST00000494859.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	57	293	2	0.873441	1.0064555	1.13947	0.0600248	0.0349281	0.190658	0.13747500000000001
chr11	65500960	65501059	4806153	0	+	0.383838	(0.378,0.408]	chr11	446569	34	EXON_LNCRNA	EXON_LNCRNA	MALAT1	ENSG00000251562.9	ENST00000619449.2:ENST00000534336.1:ENST00000544868.2	lncRNA	lncRNA	lncRNA	lncRNA	2897	13793	2	0.925458	1.003559	1.08166	0.0258193	0.0183355	0.133676	0.108462
chr19	48382933	48383022	7198947	0	-	0.516854	(0.515,0.57]	chr19	729758	5	UTR3	UTR3:EXON_MRNA	KDELR1	ENSG00000105438.9	ENST00000330720.7:ENST00000597017.5	protein_coding	protein_coding	protein_coding	protein_coding	91	368	2	1.00135	1.002775	1.0042	0.0321645	0.026140300000000002	0.133676	0.132429
chr1	207759914	207760009	304980	0	+	0.515789	(0.515,0.57]	chr1	35099	3	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	CD46	ENSG00000117335.21	ENST00000695779.1:ENST00000695777.1:ENST00000695778.1:ENST00000496723.2:ENST00000695782.1:ENST00000695781.1:ENST00000695780.1:ENST00000636114.2:ENST00000367042.6:ENST00000322875.8:ENST00000322918.9:ENST00000354848.5:ENST00000357714.5:ENST00000358170.6:ENST00000367041.5:ENST00000367047.5:ENST00000695783.1:ENST00000695784.1:ENST00000469535.5:ENST00000360212.6:ENST00000480003.5:ENST00000695785.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	59	238	2	0.939449	0.9985645	1.05768	0.0432822	0.0330046	0.162255	0.133816
chr11	65431260	65431360	4805855	0	+	0.29	(0.28,0.32]	chr11	446554	86	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	130	784	2	0.978371	0.987894	0.997417	0.0512073	0.0318831	0.157905	0.14477
chr7	26197358	26197458	3506202	0	-	0.44	(0.408,0.44]	chr7	327183	1	CDS_START	CDS_START:CDS:EXON_MRNA	HNRNPA2B1	ENSG00000122566.22	ENST00000679318.1:ENST00000677339.1:ENST00000678501.1:ENST00000676903.1:ENST00000608362.2:ENST00000677631.1:ENST00000676749.1:ENST00000677574.1:ENST00000679123.1:ENST00000677906.1:ENST00000476233.2:ENST00000677669.1:ENST00000677321.1:ENST00000678277.1:ENST00000677571.1:ENST00000679124.1:ENST00000676932.1:ENST00000678973.1:ENST00000678183.1:ENST00000679021.1:ENST00000678035.1:ENST00000677075.1:ENST00000678075.1:ENST00000678631.1:ENST00000678998.1:ENST00000490912.6:ENST00000354667.8:ENST00000618183.5:ENST00000677839.1:ENST00000677037.1:ENST00000678449.1:ENST00000679001.1:ENST00000678962.1:ENST00000676524.1:ENST00000678935.1:ENST00000678675.1:ENST00000676746.1:ENST00000356674.8:ENST00000678431.1:ENST00000678697.1:ENST00000678779.1:ENST00000676497.1:ENST00000677396.1:ENST00000360787.8:ENST00000679243.1:ENST00000677656.1:ENST00000463181.5:ENST00000678884.1:ENST00000495810.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	64	304	2	0.846779	0.9857845	1.12479	0.0627322	0.0291785	0.1962	0.128055
chrX	73842034	73842134	7837944	0	-	0.39	(0.378,0.408]	chrX	799611	47	EXON_LNCRNA	EXON_LNCRNA:INTRON	XIST	ENSG00000229807.13	ENST00000669898.1:ENST00000650627.1:ENST00000434839.3:ENST00000429829.6:ENST00000650366.1:ENST00000648607.1:ENST00000650548.1:ENST00000650186.1:ENST00000635841.2:ENST00000650637.1:ENST00000648970.1:ENST00000648991.1:ENST00000666309.1:ENST00000665247.1	lncRNA	lncRNA	lncRNA	lncRNA	59	283	2	0.951754	0.982697	1.01364	0.0664734	0.0319681	0.182544	0.144808
chr8	23567294	23567391	3715484	0	+	0.43299	(0.408,0.44]	chr8	345233	6	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	SLC25A37	ENSG00000147454.14	ENST00000519973.6:ENST00000290075.10:ENST00000417331.6:ENST00000518881.5:ENST00000520654.1:ENST00000523930.1:ENST00000523883.5:ENST00000522164.5:ENST00000521637.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	71	333	2	0.953685	0.9812725	1.00886	0.0439079	0.0387823	0.160284	0.149336
chr9	83969251	83969349	4274215	0	-	0.377551	(0.35,0.378]	chr9	393113	13	UTR3	UTR3:EXON_MRNA	HNRNPK	ENSG00000165119.21	ENST00000376281.8:ENST00000376263.8:ENST00000351839.7:ENST00000360384.9:ENST00000493362.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	109	567	2	0.93219	0.979555	1.02692	0.0393609	0.0358744	0.161534	0.138959
chr11	65444641	65444741	4805989	0	+	0.65	(0.57,1]	chr11	446554	220	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	65	151	2	0.90713	0.977845	1.04856	0.0380539	0.029148	0.157702	0.128055
chr11	65501456	65501555	4806158	0	+	0.40404	(0.378,0.408]	chr11	446569	39	EXON_LNCRNA	EXON_LNCRNA	MALAT1	ENSG00000251562.9	ENST00000619449.2:ENST00000534336.1	lncRNA	lncRNA	lncRNA	lncRNA	2263	10769	2	0.969419	0.969955	0.970491	0.02996	0.0210216	0.129138	0.122392
chr11	65504135	65504234	4806185	0	+	0.414141	(0.408,0.44]	chr11	446569	66	EXON_LNCRNA	EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MALAT1	ENSG00000251562.9	ENST00000619449.2:ENST00000534336.1:ENST00000616527.4:ENST00000620465.4:ENST00000612781.1:ENST00000618132.1	lncRNA	lncRNA	lncRNA	lncRNA	1697	7411	2	0.806709	0.9521345000000001	1.09756	0.0436055	0.0162704	0.162255	0.101453
chr19	48965407	48965507	7088096	0	+	0.58	(0.57,1]	chr19	709413	2	UTR5	UTR5:EXON_MRNA	FTL	ENSG00000087086.15	ENST00000331825.11	protein_coding	protein_coding	protein_coding	protein_coding	318	733	2	0.787891	0.9321355	1.07638	0.0422038	0.00728452	0.148082	0.0760092
chr3	196057961	196058044	1897290	0	-	0.445783	(0.44,0.476]	chr3	189904	1	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	TFRC	ENSG00000072274.13	ENST00000420415.5:ENST00000360110.9:ENST00000392396.7:ENST00000475593.5:ENST00000483983.5:ENST00000463356.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	52	228	2	0.884192	0.9275655	0.970939	0.0658772	0.0559372	0.18407	0.181625
chr6	31835951	31836032	2843843	0	+	0.382716	(0.378,0.408]	chr6	267909	1	SS3_PROX	SS3_PROX:SS5_PROX:INTRON	SNHG32	ENSG00000204387.14	ENST00000375640.7:ENST00000375641.6:ENST00000375635.6:ENST00000375638.7:ENST00000648677.1:ENST00000375642.6:ENST00000614363.4:ENST00000395789.5:ENST00000375633.5	lncRNA	lncRNA	lncRNA	lncRNA	57	281	2	0.905725	0.9272739999999999	0.948823	0.064363	0.0534499	0.199973	0.162935
chr15	95784658	95784757	6109821	0	+	0.606061	(0.57,1]	chr15	581803	27	INTRON	INTRON	ENSG00000275016	ENSG00000275016.5	ENST00000612595.2:ENST00000667774.1:ENST00000616588.4:ENST00000656202.1:ENST00000666386.1	lncRNA	lncRNA	lncRNA	lncRNA	109	235	2	0.85759	0.861794	0.865998	0.0460392	0.0349777	0.149946	0.149337
chr11	65500861	65500960	4806152	0	+	0.424242	(0.408,0.44]	chr11	446569	33	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	MALAT1	ENSG00000251562.9	ENST00000619449.2:ENST00000534336.1:ENST00000544868.2	lncRNA	lncRNA	lncRNA	lncRNA	3451	14757	2	0.833224	0.8581915	0.883159	0.0497911	0.0305168	0.156383	0.143385
chr11	65501952	65502051	4806163	0	+	0.333333	(0.32,0.35]	chr11	446569	44	EXON_LNCRNA	EXON_LNCRNA	MALAT1	ENSG00000251562.9	ENST00000619449.2:ENST00000534336.1:ENST00000508832.2:ENST00000616527.4	lncRNA	lncRNA	lncRNA	lncRNA	2013	9784	2	0.773896	0.8330225	0.892149	0.0571856	0.0483764	0.186624	0.153549
chr8	73293612	73293633	3967602	0	-	0.571429	(0.57,1]	chr8	364044	1	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	RPL7	ENSG00000147604.14	ENST00000352983.7:ENST00000396467.5:ENST00000396466.5:ENST00000396465.5	protein_coding	protein_coding	protein_coding	protein_coding	91	190	2	0.765615	0.812935	0.860255	0.0612452	0.0480821	0.193423	0.153019